PeakID	Chr	Start	End	Strand	Peak Score	Focus Ratio/Region Size	Annotation	Detailed Annotation	Distance to TSS	Nearest PromoterID	Entrez ID	Nearest Unigene	Nearest Refseq	Nearest Ensembl	Gene Name	Gene Alias	Gene Description	Gene Type	/home/h1bennet/strains/data/H3K27Ac/control_f1/tag_only_muts_mouse_cb6f1j_Male_Kupffer_ChIP_H3K27ac_Chow_healthyoung_CB61A_TDT_l20201212_AGTTCAGG_CCAACAGA_S23_L001.mm10.bowtie2.sam	/home/h1bennet/strains/data/H3K27Ac/control_f1/tag_only_muts_mouse_cb6f1j_Male_Kupffer_ChIP_H3K27ac_Chow_healthyoung_CB61BC_TDT_l20201212_GACCTGAA_TTGGTGAG_S24_L001.mm10.bowtie2.sam	/home/h1bennet/strains/data/H3K27Ac/control_f1/tag_only_muts_mouse_cb6f1j_Male_Kupffer_ChIP_H3K27ac_Chow_healthyoung_CB61D_TDT_l20201212_TCTCTACT_CGCGGTTC_S25_L001.mm10.bowtie2.sam	/home/h1bennet/strains/data/H3K27Ac/control_f1/tag_only_muts_mouse_cb6f1j_Male_Kupffer_ChIP_H3K27ac_Chow_healthyoung_CB61A_TDT_l20201212_AGTTCAGG_CCAACAGA_S23_L001.balbcj.bowtie2_shifted_from_BALBCJ.sam	/home/h1bennet/strains/data/H3K27Ac/control_f1/tag_only_muts_mouse_cb6f1j_Male_Kupffer_ChIP_H3K27ac_Chow_healthyoung_CB61BC_TDT_l20201212_GACCTGAA_TTGGTGAG_S24_L001.balbcj.bowtie2_shifted_from_BALBCJ.sam	/home/h1bennet/strains/data/H3K27Ac/control_f1/tag_only_muts_mouse_cb6f1j_Male_Kupffer_ChIP_H3K27ac_Chow_healthyoung_CB61D_TDT_l20201212_TCTCTACT_CGCGGTTC_S25_L001.balbcj.bowtie2_shifted_from_BALBCJ.sam
Merged-chr5-122769003-4	chr5	122768502	122769502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199676, intron 1 of 16)	intron (NM_001199676, intron 1 of 16)	10408.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80269644-4	chr7	80269113	80270113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178070)	promoter-TSS (NM_178070)	-42.0	NM_178070	233405.0	Mm.322870	NM_178070	ENSMUSG00000030534	Vps33b	-	vacuolar protein sorting 33B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-14074446-4	chr9	14073945	14074945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-201856.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35647514-4	chr7	35647023	35648023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019746)	promoter-TSS (NM_019746)	-41.0	NM_019746	56330.0	Mm.371609	NM_019746	ENSMUSG00000030417	Pdcd5	2200003D22Rik|AA408513|Tfar19	programmed cell death 5	protein-coding	0.5	13.0	2.5	0.5	13.5	9.5
Merged-chr15-94589888-4	chr15	94589370	94590370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008971)	promoter-TSS (NM_008971)	-46.0	NM_008971	19230.0	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118861922-4	chr2	118861409	118862409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019826)	promoter-TSS (NM_019826)	-91.0	NM_019826	56357.0	Mm.6635	NM_019826	ENSMUSG00000027332	Ivd	1300016K07Rik|6720455E18Rik|AI463340	isovaleryl coenzyme A dehydrogenase	protein-coding	26.5	93.0	61.5	14.0	68.5	45.0
Merged-chr3-137865751-4	chr3	137865258	137866258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316995, intron 3 of 4)	CpG-9623	1271.0	NM_016750	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	28.0	73.0	23.5	31.5	73.5	25.5
Merged-chr8-122560502-1	chr8	122560002	122561002	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-7513.0	NM_026014	67177.0	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	35.0	43.0	71.5	32.5	37.0	61.5
Merged-chr1-119837566-4	chr1	119837064	119838064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019933)	promoter-TSS (NM_019933)	-493.0	NM_019933	19258.0	Mm.458796	NM_019933	ENSMUSG00000026384	Ptpn4	PTPMEG|Ptn4|TEP|TEP/mPTPMEG|hPTP-MEG	protein tyrosine phosphatase, non-receptor type 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-86880585-2	chr10	86880085	86881085	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 44 of 68)	intron (NM_138673, intron 44 of 68)	101580.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99789788-4	chr12	99789309	99790309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030172, intron 5 of 5)	intron (NM_030172, intron 5 of 5)	93633.0	NM_030172	78767.0	Mm.235920	NM_030172	ENSMUSG00000021176	Efcab11	2610021K21Rik|2610110A13Rik	EF-hand calcium binding domain 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116175255-4	chr9	116174777	116175777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009371)	promoter-TSS (NM_009371)	86.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	61.5	165.5	103.0	63.5	193.0	131.0
Merged-chr10-41937385-4	chr10	41936858	41937858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 12 of 17)	intron (NM_001034858, intron 12 of 17)	49919.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28444795-4	chr7	28444297	28445297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039192, intron 4 of 6)	intron (NM_001039192, intron 4 of 6)	3860.0	NM_001039192	63986.0	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-104732295-4	chr2	104731784	104732784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144804, intron 1 of 8)	intron (NM_144804, intron 1 of 8)	10517.0	NM_144804	211896.0	Mm.288805	NM_144804	ENSMUSG00000027173	Depdc7	AV216087	DEP domain containing 7	protein-coding	37.0	103.0	72.5	30.5	116.0	98.0
Merged-chr6-123267063-4	chr6	123266567	123267567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010819, exon 3 of 6)	exon (NM_010819, exon 3 of 6)	4960.0	NM_010819	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-137952999-4	chr3	137952505	137953505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 3 of 8)	intron (NM_011932, intron 3 of 8)	28544.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	34.0	89.0	25.5	30.0	42.0	29.0
Merged-chr2-11438423-4	chr2	11437936	11438936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39936.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64083376-4	chr15	64082874	64083874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22926.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-44783336-4	chr17	44782832	44783832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178652, intron 1 of 11)	intron (NM_178652, intron 1 of 11)	6166.0	NM_178652	109115.0	Mm.431327	NM_178652	ENSMUSG00000038954	Supt3	2310066G22Rik|AI315192|SPT3|SPT3L|Supt3h	suppressor of Ty 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-164440361-3	chr1	164439853	164440853	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009721, intron 4 of 5)	intron (NM_009721, intron 4 of 5)	18002.0	NM_009721	11931.0	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79892360-4	chr15	79891899	79892899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160415)	promoter-TSS (NM_001160415)	-9.0	NM_001160415	80287.0	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Gm20117|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	68.0	305.0	161.0	63.0	131.5	99.0
Merged-chr16-20717738-4	chr16	20717253	20718253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145632)	promoter-TSS (NM_145632)	-73.0	NM_145632	245841.0	Mm.288730	NM_145632	ENSMUSG00000021018	Polr2h	-	polymerase (RNA) II (DNA directed) polypeptide H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-99344705-4	chr13	99344200	99345200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026873)	promoter-TSS (NM_026873)	-22.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	4.0	25.5	18.0	9.5	9.5	17.0
Merged-chr17-65745068-4	chr17	65744585	65745585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	MTE2a|LTR|ERVL-MaLR	27667.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29008901-3	chr7	29008399	29009399	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009109, intron 100 of 105)	intron (NM_009109, intron 100 of 105)	26045.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-19888655-4	chr5	19888160	19889160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 2 of 22)	intron (NM_001170746, intron 2 of 22)	-18858.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-174438961-4	chr2	174438449	174439449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022325)	promoter-TSS (NM_022325)	90.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-121110360-4	chr6	121109825	121110825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270475, intron 1 of 31)	intron (NM_001270475, intron 1 of 31)	20697.0	NM_001270475	194401.0	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	4.0	0.5	0.0	1.5	3.0	0.5
Merged-chr9-21804538-4	chr9	21804068	21805068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177030, intron 43 of 49)	intron (NM_177030, intron 43 of 49)	5432.0	NR_106051	102465657.0		NR_106051	ENSMUSG00000098473	Mir7083	Gm27888|mmu-mir-7083	microRNA 7083	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-19394338-4	chr13	19393827	19394827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347485, intron 1 of 7)	intron (NM_001347485, intron 1 of 7)	1486.0	NM_024270	76205.0	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173427555-4	chr1	173427049	173428049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 1 of 8)	RMER19B|LTR|ERVK	6945.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	61.5	197.0	93.0	92.5	133.0	112.0
Merged-chr13-44733752-8	chr13	44733256	44734256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205043, intron 1 of 17)	CpG	2485.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	31.0	39.0	51.5	37.0	69.0	49.5
Merged-chr2-32548145-4	chr2	32547638	32548638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153560, intron 1 of 10)	intron (NM_153560, intron 1 of 10)	12779.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17921998-4	chr16	17921528	17922528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	6191.0	NM_153150	13358.0	Mm.229291	NM_153150	ENSMUSG00000003528	Slc25a1	1300019P08Rik|2610100G11Rik|AI194714|Ctp|Dgsj|Slc20a3	solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60673163-4	chr13	60672657	60673657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	70946.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	34.5	163.5	94.5	48.5	143.0	109.5
Merged-chr15-76538788-4	chr15	76538269	76539269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013909)	promoter-TSS (NM_013909)	-23.0	NM_013909	30840.0	Mm.275279	NM_013909	ENSMUSG00000022559	Fbxl6	AU021795|Fbl6	F-box and leucine-rich repeat protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-13889640-4	chr13	13889147	13890147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65027.0	NM_001362404	97884.0	Mm.21686	NM_178640	ENSMUSG00000039242	B3galnt2	A930105D20Rik|C80633|D230016N13Rik	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23547341-4	chr17	23546831	23547831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3468.0	NR_126485	320020.0	Mm.445111	NR_126484		6330415G19Rik	-	RIKEN cDNA 6330415G19 gene	ncRNA	19.0	41.5	27.5	27.0	53.5	31.5
Merged-chr4-15233890-3	chr4	15233393	15234393	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31927.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	0.0	7.0	2.5	15.0	11.0	2.0
Merged-chr4-53158844-4	chr4	53158357	53159357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	1038.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	21.0	33.0	25.0	3.5	45.0	18.0
Merged-chr7-25651454-4	chr7	25650956	25651956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007533, intron 1 of 8)	intron (NM_007533, intron 1 of 8)	7305.0	NM_007533	12039.0	Mm.25848	NM_007533	ENSMUSG00000060376	Bckdha	-	branched chain ketoacid dehydrogenase E1, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102367868-2	chr12	102367368	102368368	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 5 of 9)	intron (NM_177620, intron 5 of 9)	71945.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123425842-4	chr4	123425325	123426325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 52 of 92)	intron (NM_001199137, intron 52 of 92)	-13914.0	NM_001167918	442834.0	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88768375-2	chr5	88767875	88768875	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007832, intron 1 of 6)	intron (NM_007832, intron 1 of 6)	3362.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40730009-2	chr19	40729509	40730509	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 7 of 9)	intron (NM_001304721, intron 7 of 9)	70239.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	1.5	5.0	1.0	1.5	1.5	2.0
Merged-chr12-37241312-4	chr12	37240802	37241802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178767)	promoter-TSS (NM_178767)	-337.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	106.5	365.0	182.5	121.5	391.5	220.0
Merged-chr19-42091096-4	chr19	42090606	42091606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145501, intron 1 of 8)	intron (NM_145501, intron 1 of 8)	671.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	89.0	192.0	141.0	108.0	170.5	153.5
Merged-chr13-43398403-4	chr13	43397936	43398936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023554)	promoter-TSS (NM_023554)	60.0	NM_023554	70078.0	Mm.439927	NM_023554	ENSMUSG00000063200	Nol7	2210008F15Rik|5730556I21Rik|NOP27|RARG-1	nucleolar protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64737714-4	chr9	64737223	64738223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017382)	promoter-TSS (NM_017382)	33.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27820717-4	chr17	27820217	27821217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271511)	promoter-TSS (NM_001271511)	-175.0	NM_001271511	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	83.5	183.5	183.0	57.0	125.5	111.0
Merged-chr8-36238257-4	chr8	36237774	36238774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081150, intron 1 of 11)	intron (NM_001081150, intron 1 of 11)	11242.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	3.0	2.5	9.5	9.5	20.5	26.5
Merged-chr8-56550730-4	chr8	56550253	56551253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015791)	promoter-TSS (NM_015791)	-187.0	NM_001009951	382010.0	Mm.425534	NM_001009951	ENSMUSG00000038215	Cep44	4933440G23Rik|mKIAA1712	centrosomal protein 44	protein-coding	39.0	95.5	84.0	40.5	53.5	59.5
Merged-chr18-30272809-4	chr18	30272308	30273308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181414)	promoter-TSS (NM_181414)	-57.0	NM_181414	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128526054-4	chr10	128525550	128526550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011843)	promoter-TSS (NM_011843)	-191.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111577651-4	chr9	111577144	111578144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016853, intron 8 of 10)	intron (NM_016853, intron 8 of 10)	112704.0	NM_016853	20840.0	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30790743-2	chr16	30790243	30791243	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	191020.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100040896-4	chr15	100040397	100041397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	2233.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54885091-4	chr11	54884611	54885611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17743.0	NM_001329860	14778.0	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4167997-2	chr8	4167497	4168497	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346730, intron 1 of 19)	intron (NM_001346730, intron 1 of 19)	1430.0	NM_001346730	213027.0	Mm.437106	NM_153536	ENSMUSG00000011832	Evi5l	1700084G18Rik|2310039H16Rik|3110007G05Rik|B130050I23Rik	ecotropic viral integration site 5 like	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr15-4026119-2	chr15	4025619	4026619	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024188)	promoter-TSS (NM_024188)	-309.0	NM_024188	67041.0	Mm.13445	NM_024188	ENSMUSG00000022186	Oxct1	2610008O03Rik|Oxct|Oxct2a|Scot-s	3-oxoacid CoA transferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5849317-4	chr19	5848822	5849822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3842.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118691094-4	chr14	118690578	118691578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163676, intron 1 of 29)	intron (NM_001163676, intron 1 of 29)	-14147.0	NM_001163675	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27449609-4	chr3	27449094	27450094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 23 of 26)	intron (NM_001356953, intron 23 of 26)	78243.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-48817919-2	chr11	48817419	48818419	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145377)	promoter-TSS (NM_145377)	-528.0	NM_145377	211007.0	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110436914-4	chr12	110436417	110437417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10262.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140621227-2	chr5	140620727	140621727	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175274, exon 14 of 14)	3' UTR (NM_175274, exon 14 of 14)	13886.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-58553309-4	chr4	58552819	58553819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172989)	promoter-TSS (NM_172989)	-26.0	NM_172989	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0.5	1.0	0.5	0.0	0.0	2.0
Merged-chr7-16286347-4	chr7	16285840	16286840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136471, intron 1 of 13)	CpG	455.0	NM_001136471	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	7.5	33.5	23.5	21.0	35.0	32.0
Merged-chr9-83441163-4	chr9	83440654	83441654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027448)	promoter-TSS (NM_027448)	-27.0	NM_029434	75782.0	Mm.199698	NM_027448	ENSMUSG00000032258	Lca5	4930431B11Rik|5730406O13Rik|AV274874|ORF64	Leber congenital amaurosis 5 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-92375371-4	chr2	92374860	92375860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145122, exon 1 of 11)	5' UTR (NM_145122, exon 1 of 11)	121.0	NM_145122	18633.0	Mm.202782	NM_145122	ENSMUSG00000027222	Pex16	-	peroxisomal biogenesis factor 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46087132-4	chr4	46086663	46087663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021883, intron 4 of 9)	intron (NM_021883, intron 4 of 9)	47941.0	NM_021883	21916.0	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	32.5	44.5	32.0	31.5	69.0	72.0
Merged-chr8-105607960-4	chr8	105607461	105608461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081241, intron 1 of 21)	intron (NM_001081241, intron 1 of 21)	2732.0	NM_001081241	75687.0	Mm.41261	NM_001081241	ENSMUSG00000038604	Ripor1	2310066E14Rik|AI837433|Fam65a	RHO family interacting cell polarization regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-33215849-2	chr14	33215349	33216349	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153800)	promoter-TSS (NM_153800)	-974.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-57518584-4	chr11	57518061	57519061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168668)	promoter-TSS (NM_001168668)	83.0	NM_001168667	67726.0	Mm.25632	NM_026342	ENSMUSG00000020523	Fam114a2	1810073G14Rik|9030624B09Rik	family with sequence similarity 114, member A2	protein-coding	49.5	77.0	86.0	36.0	96.0	76.5
Merged-chr10-80590407-4	chr10	80589904	80590904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145421)	promoter-TSS (NM_145421)	-63.0	NM_145421	216169.0	Mm.29802	NM_145421	ENSMUSG00000003346	Abhd17a	1700013O15Rik|BC005632|D10Bwg1364e|Fam108a	abhydrolase domain containing 17A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64241136-3	chr5	64240622	64241622	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	10765.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	75.0	161.5	104.0	63.0	162.0	91.0
Merged-chr6-29217857-4	chr6	29217370	29218370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1506.0	NM_001302934	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	7.5	21.0	6.0	5.5	21.0	6.5
Merged-chr4-141538854-4	chr4	141538351	141539351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019763)	promoter-TSS (NM_019763)	-254.0	NM_019763	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	35.5	70.0	46.0	18.5	49.0	27.0
Merged-chr2-32078717-4	chr2	32078234	32079234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151493, intron 2 of 5)	intron (NR_151493, intron 2 of 5)	4971.0	NM_175511	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96638330-4	chr15	96637836	96638836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166458, intron 1 of 15)	intron (NM_001166458, intron 1 of 15)	3626.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-66816128-4	chr1	66815619	66816619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357156, intron 1 of 14)	MIR|SINE|MIR	1476.0	NM_177645	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128980542-4	chr4	128980061	128981061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER31A|LTR|ERV1	-12663.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81088564-4	chr10	81088069	81089069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145365, exon 8 of 12)	exon (NM_145365, exon 8 of 12)	10303.0	NM_145365	208677.0	Mm.294693	NM_145365	ENSMUSG00000035041	Creb3l3	BC010786|CREB-H|D10Bur1e	cAMP responsive element binding protein 3-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95807168-2	chr15	95806668	95807668	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	16325.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-61594129-1	chr2	61593629	61594629	+	1000.0	f0_c57.idr	non-coding (NR_149323, exon 2 of 10)	non-coding (NR_149323, exon 2 of 10)	1032.0	NR_149323	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99407773-4	chr7	99407267	99408267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362166, intron 3 of 18)	intron (NM_001362166, intron 3 of 18)	26249.0	NM_001362166	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	3.0	8.0	7.5	3.0	7.5	3.5
Merged-chr5-21187009-4	chr5	21186504	21187504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 1 of 26)	intron (NR_153365, intron 1 of 26)	737.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99479430-4	chr9	99478951	99479951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028768, exon 22 of 22)	3' UTR (NM_028768, exon 22 of 22)	9030.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	10.0	8.5	9.5	9.0	17.0	18.0
Merged-chr15-95799807-4	chr15	95799298	95800298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	8955.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129068283-4	chr4	129067791	129068791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 1 of 8)	intron (NM_029219, intron 1 of 8)	10020.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35038243-2	chr9	35037743	35038743	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78485.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-12087190-4	chr4	12086693	12087693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110955, intron 1 of 28)	intron (NR_110955, intron 1 of 28)	764.0	NM_177861	329795.0	Mm.475125	NM_177861	ENSMUSG00000049488	Tmem67	5330408M12Rik|B230117O07|b2b1163.1Clo|b2b1291.1Clo	transmembrane protein 67	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61420589-2	chr10	61420089	61421089	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013611, intron 1 of 2)	intron (NM_013611, intron 1 of 2)	2617.0	NM_013611	18119.0	Mm.57195	NM_013611	ENSMUSG00000037171	Nodal	Tg.413d	nodal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158147198-2	chr2	158146698	158147698	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009373)	promoter-TSS (NM_009373)	-806.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80567926-2	chr10	80567426	80568426	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_078477, exon 2 of 2)	3' UTR (NM_078477, exon 2 of 2)	-6366.0	NM_025852	66932.0	Mm.1116	NM_025852	ENSMUSG00000047417	Rexo1	1700021P10Rik|2610511M11Rik|AW050347|EloA-BP1|Rex1|Tceb3bp1	REX1, RNA exonuclease 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34624162-4	chr18	34623668	34624668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166406)	promoter-TSS (NM_001166406)	-456.0	NM_001166407	19348.0	Mm.258846	NM_009004	ENSMUSG00000003779	Kif20a	AA415432|Rab6kifl	kinesin family member 20A	protein-coding	5.5	34.5	19.0	7.0	27.0	25.5
Merged-chr11-3170984-1	chr11	3170484	3171484	+	1000.0	f0_balb.idr	intron (NM_030207, intron 6 of 32)	RSINE1|SINE|B4	22479.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28233596-4	chr17	28233088	28234088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 1 of 7)	intron (NM_011145, intron 1 of 7)	834.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82812531-4	chr18	82812028	82813028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43369.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90745913-2	chr2	90745413	90746413	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018828, intron 1 of 16)	CpG	543.0	NM_018828	55935.0	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3461655-4	chr5	3461145	3462145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 4 of 7)	intron (NM_009873, intron 4 of 7)	-82188.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118290304-4	chr11	118289808	118290808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033528)	promoter-TSS (NM_001033528)	-64.0	NM_001033528	72344.0	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127553231-6	chr3	127552694	127553694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197997)	promoter-TSS (NM_197997)	155.0	NM_138593	28036.0	Mm.291032	NM_138593	ENSMUSG00000027968	Larp7	C330027G06Rik|D3Wsu161e	La ribonucleoprotein domain family, member 7	protein-coding	97.0	216.0	210.0	71.5	192.5	123.0
Merged-chr1-138856747-4	chr1	138856162	138857162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081226, exon 1 of 3)	exon (NM_001081226, exon 1 of 3)	192.0	NM_001081226	69549.0	Mm.264673	NM_001081226	ENSMUSG00000079283	2310009B15Rik	-	RIKEN cDNA 2310009B15 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37620739-4	chr13	37620220	37621220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-205318.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119294639-4	chr4	119294171	119295171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011732)	promoter-TSS (NM_011732)	-158.0	NM_011732	22608.0	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96916636-4	chr11	96916134	96917134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308183)	promoter-TSS (NM_001308183)	-120.0	NM_030248	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35181188-2	chr17	35180688	35181688	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-5136.0	NM_001361501	11629.0	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16309471-4	chr7	16308941	16309941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133234)	promoter-TSS (NM_133234)	-142.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120790883-4	chr8	120790365	120791365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52226.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34528013-1	chr5	34527513	34528513	+	1000.0	f1_balb.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	2229.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0.0	7.5	4.5	13.0	5.0	7.5
Merged-chr17-27909328-4	chr17	27908841	27909841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026836)	promoter-TSS (NM_026836)	35.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	37.5	125.0	83.0	33.0	94.0	79.0
Merged-chr10-128748448-4	chr10	128747962	128748962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253704)	promoter-TSS (NM_001253704)	7.0	NM_001253704	78428.0	Mm.27358	NM_030100	ENSMUSG00000064030	Pym1	A030010B05Rik|Pym|Wibg	PYM homolog 1, exon junction complex associated factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157069653-4	chr2	157069158	157070158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	9607.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40646745-2	chr19	40646245	40647245	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	RLTR34B_MM|LTR|ERVK	-13025.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	20.0	32.5	12.0	18.0	9.0	30.5
Merged-chr1-89931230-2	chr1	89930730	89931730	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010262)	promoter-TSS (NM_010262)	-54.0	NM_010262	14472.0	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-31351438-4	chr12	31350911	31351911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007861)	promoter-TSS (NM_007861)	60.0	NM_007861	13382.0	Mm.3131	NM_007861	ENSMUSG00000020664	Dld	-	dihydrolipoamide dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83595168-4	chr15	83594664	83595664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183017)	promoter-TSS (NM_183017)	-7.0	NM_183017	223723.0	Mm.46778	NM_183017	ENSMUSG00000016757	Ttll12	BC055368|D430005B17	tubulin tyrosine ligase-like family, member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-79811148-4	chr7	79810645	79811645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008589, exon 1 of 2)	exon (NM_008589, exon 1 of 2)	418.0	NM_008589	17293.0	Mm.31472	NM_008589	ENSMUSG00000030543	Mesp2	bHLHc6	mesoderm posterior 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102393413-2	chr11	102392913	102393913	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016759)	promoter-TSS (NM_016759)	10.0	NM_001252347	51799.0	Mm.2560	NM_016759	ENSMUSG00000006575	Rundc3a	RPIP-8|Rap2ip|Rpip8	RUN domain containing 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3649113-4	chr11	3648631	3649631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159288)	promoter-TSS (NM_001159288)	-317.0	NR_002321	544752.0	Mm.390314	NR_002321	ENSMUSG00000056579	Tug1	AI316828	taurine upregulated gene 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-8164296-2	chr14	8163796	8164796	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178279, exon 19 of 19)	3' UTR (NM_178279, exon 19 of 19)	8696.0	NM_024221	68263.0	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126148443-4	chr4	126147966	126148966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172145, exon 1 of 3)	5' UTR (NM_172145, exon 1 of 3)	463.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-75440579-2	chr9	75440079	75441079	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039522)	promoter-TSS (NM_001039522)	-945.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	3.5	7.0	4.5	0.0	9.0	2.0
Merged-chr11-100580697-2	chr11	100580197	100581197	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009923, exon 4 of 4)	exon (NM_009923, exon 4 of 4)	4806.0	NM_001146318	12799.0	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131097840-4	chr1	131097345	131098345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008551)	promoter-TSS (NM_008551)	-2.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	113.0	178.5	131.0	29.0	52.5	44.0
Merged-chr11-116413127-4	chr11	116412623	116413623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027258)	promoter-TSS (NM_027258)	-91.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107289764-7	chr9	107289247	107290247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316691)	promoter-TSS (NM_001316691)	130.0	NM_178907	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	94.5	318.5	208.5	47.5	158.0	93.5
Merged-chr2-131478468-4	chr2	131477994	131478994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13368.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-133048283-4	chr7	133047743	133048743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	-32996.0	NM_001170744	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127708849-4	chr7	127708338	127709338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009746)	promoter-TSS (NM_009746)	-72.0	NM_001347652	12055.0	Mm.89667	NM_009746	ENSMUSG00000030814	Bcl7c	C230096E12Rik	B cell CLL/lymphoma 7C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91407582-2	chr16	91407082	91408082	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008349, intron 1 of 6)	intron (NM_008349, intron 1 of 6)	1347.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97461911-4	chr6	97461411	97462411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	MLT1A|LTR|ERVL-MaLR	-2625.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	198.0	443.5	298.5	198.5	396.0	359.5
Merged-chr9-21592846-4	chr9	21592347	21593347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138303)	promoter-TSS (NM_138303)	-16.0	NM_138303	74766.0	Mm.475712	NM_138303	ENSMUSG00000032182	Yipf2	1300010K09Rik	Yip1 domain family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-136937019-4	chr2	136936519	136937519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355671, intron 2 of 6)	intron (NM_001355671, intron 2 of 6)	37668.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34851765-4	chr1	34851288	34852288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145516, intron 1 of 7)	intron (NM_145516, intron 1 of 7)	1799.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64040954-4	chr15	64040453	64041453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	18811.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30085201-4	chr13	30084693	30085693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51297.0	NM_153546	218121.0	Mm.89682	NM_153546	ENSMUSG00000038732	Mboat1	9130215M02Rik|BC023845|LPEAT1|Moact1|Oact1	membrane bound O-acyltransferase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-66458581-4	chr18	66458081	66459081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021451)	promoter-TSS (NM_021451)	-23.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142395711-4	chr3	142395213	142396213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190855)	promoter-TSS (NM_001190855)	-17.0	NM_019808	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	50.5	135.0	91.0	46.5	121.5	76.5
Merged-chr1-180813657-4	chr1	180813152	180814152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008210)	promoter-TSS (NM_008210)	-47.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-106010195-4	chr12	106009711	106010711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011705)	promoter-TSS (NM_011705)	-52.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95817592-4	chr10	95817083	95818083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	-123080.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24629418-4	chr16	24628926	24629926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-92429.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-13544499-4	chr2	13544012	13545012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010067, intron 1 of 10)	GC_rich|Low_complexity|Low_complexity	152.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-19419374-4	chr14	19418905	19419905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	183182.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120784663-2	chr11	120784163	120785163	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009053)	promoter-TSS (NM_009053)	148.0	NM_145370	209318.0	Mm.30195	NM_145370	ENSMUSG00000025156	Gps1	Cops1|Csn1|R75577|Sgn1	G protein pathway suppressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47920660-4	chr6	47920184	47921184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001145881, exon 1 of 5)	5' UTR (NM_001145881, exon 1 of 5)	116.0	NM_001145881	232784.0	Mm.196782	NM_145576	ENSMUSG00000052763	Zfp212	Znf212|mKIAA3011	Zinc finger protein 212	protein-coding	25.5	57.5	28.5	28.5	79.5	37.0
Merged-chr17-17392972-4	chr17	17392479	17393479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025934, intron 9 of 9)	ID_B1|SINE|B4	-9707.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	115.5	321.0	211.5	99.5	232.5	200.5
Merged-chr6-119479329-4	chr6	119478823	119479823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133940)	promoter-TSS (NM_133940)	-345.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	0.0	0.0	1.5	0.0	0.0	6.0
Merged-chr6-116668894-2	chr6	116668394	116669394	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178045, intron 1 of 10)	intron (NM_178045, intron 1 of 10)	4942.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-23758358-4	chr19	23757865	23758865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177034)	promoter-TSS (NM_177034)	-511.0	NM_177034	319924.0	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	15.5	17.0	15.5	13.5	9.0	14.0
Merged-chr8-119558853-4	chr8	119558359	119559359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019709)	promoter-TSS (NM_019709)	-98.0	NM_019709	56453.0	Mm.206934	NM_019709	ENSMUSG00000031835	Mbtps1	0610038M03Rik|AV003995|S1P|SKI-1|Ski1|mKIAA0091	membrane-bound transcription factor peptidase, site 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35394047-3	chr17	35393538	35394538	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_051981)	promoter-TSS (NR_051981)	-61.0	NR_051981	15016.0	Mm.439648	NR_051981	ENSMUSG00000055413	H2-Q5	H-2Q5|Qa-5|Qa5|Qat-5	histocompatibility 2, Q region locus 5	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167770530-2	chr2	167770030	167771030	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79353.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114677249-2	chr11	114676749	114677749	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	1781.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-119388456-2	chr6	119387956	119388956	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_197985, intron 1 of 7)	CpG	278.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-115040917-4	chr14	115040421	115041421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2750.0	NR_029785	723905.0		NR_029785	ENSMUSG00000065508	Mir17	Mirn17|mir-17|mmu-mir-17	microRNA 17	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-98329775-4	chr9	98329263	98330263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357445, intron 1 of 3)	intron (NM_001357445, intron 1 of 3)	33193.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	9.5	15.0	23.5	22.5	30.5	17.0
Merged-chr15-74919736-3	chr15	74919263	74920263	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35288.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43531552-1	chr19	43531052	43532052	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-6947.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108387353-4	chr8	108386847	108387847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	197330.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0.0	2.0	4.0	0.0	2.0	4.0
Merged-chr7-132620180-4	chr7	132619669	132620669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 1 of 6)	intron (NM_029609, intron 1 of 6)	9526.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25054440-4	chr2	25053927	25054927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020276)	promoter-TSS (NM_020276)	48.0	NM_001177655	56876.0	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52523290-4	chr2	52522816	52523816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	MLT1B|LTR|ERVL-MaLR	35295.0	NM_146123	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102230202-4	chr11	102229685	102230685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284250)	promoter-TSS (NM_001284250)	-13.0	NM_001284250	15184.0	Mm.22665	NM_010412	ENSMUSG00000008855	Hdac5	AI426555|Hdac4|mHDA1|mKIAA0600	histone deacetylase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-117237346-4	chr13	117236840	117237840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010330, intron 2 of 8)	intron (NM_010330, intron 2 of 8)	16767.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0.0	0.0	2.5	1.0	3.5	2.5
Merged-chr11-22982246-4	chr11	22981720	22982720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144514)	promoter-TSS (NM_144514)	64.0	NM_144514	17846.0	Mm.259903	NM_144514	ENSMUSG00000051355	Commd1	AI256843|Murr1|U2/Mu	COMM domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-25011289-4	chr5	25010810	25011810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 3 of 15)	intron (NM_145401, intron 3 of 15)	-15557.0	NM_001310480	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39653042-4	chr18	39652538	39653538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120459.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167781593-2	chr2	167781093	167782093	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90416.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19749773-4	chr7	19749278	19750278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159724)	promoter-TSS (NM_001159724)	-205.0	NM_001159724	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-28482389-4	chr6	28481892	28482892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 1 of 23)	intron (NM_019776, intron 1 of 23)	2044.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-154786397-4	chr1	154785900	154786900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60480.0	NM_009782	12290.0	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34872041-4	chr6	34871551	34872551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347101, exon 4 of 4)	3' UTR (NM_001347101, exon 4 of 4)	6014.0	NM_199145	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75462475-4	chr11	75461978	75462978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030711, intron 1 of 2)	intron (NR_030711, intron 1 of 2)	939.0	NR_030711	100042498.0	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	10.5	12.5	11.5	6.5	4.5	20.0
Merged-chr7-19381935-4	chr7	19381438	19382438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007949)	promoter-TSS (NM_007949)	-101.0	NM_007949	13871.0	Mm.36524	NM_007949	ENSMUSG00000030400	Ercc2	AA407812|AU020867|AW240756|CXPD|Ercc-2|Mhdarco15|RCO015|XPD	excision repair cross-complementing rodent repair deficiency, complementation group 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-67813987-7	chr13	67813482	67814482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198322, intron 1 of 3)	CpG	166.0	NM_198322	212569.0	Mm.358842	NM_198322	ENSMUSG00000030446	Zfp273	6820416H06Rik|Rslcan1	zinc finger protein 273	protein-coding	42.5	169.5	198.5	27.0	95.0	96.5
Merged-chr1-131138292-4	chr1	131137725	131138725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145508)	promoter-TSS (NM_145508)	9.0	NM_145508	226419.0	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37420833-4	chr9	37420332	37421332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164767, intron 17 of 27)	CpG	12343.0	NM_001164767	19649.0	Mm.212826	NM_011248	ENSMUSG00000032128	Robo3	Rbig1|Rig-1|Rig1|Robo3a|Robo3b	roundabout guidance receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70057135-4	chr14	70056625	70057625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-20320.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-94533366-2	chr17	94532866	94533866	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	216653.0	NM_001357136	76781.0	Mm.139146	NM_176917	ENSMUSG00000055660	Mettl4	2410198H06Rik|A730091E08Rik|AV296509|HsT661	methyltransferase like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99967278-4	chr12	99966764	99967764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	2765.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76908302-2	chr15	76907802	76908802	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	4231.0	NM_012053	26961.0	Mm.30066	NM_012053	ENSMUSG00000003970	Rpl8	-	ribosomal protein L8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-99141343-4	chr3	99140769	99141769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027462, intron 1 of 5)	CpG	179.0	NM_027462	70560.0	Mm.316754	NM_027462	ENSMUSG00000004233	Wars2	5730427B17Rik|9430020O07Rik|AI413375|TrpRS	tryptophanyl tRNA synthetase 2 (mitochondrial)	protein-coding	65.0	137.0	130.0	59.5	157.0	94.0
Merged-chr10-57486302-4	chr10	57485797	57486797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045353)	promoter-TSS (NR_045353)	56.0	NR_045353	74928.0	Mm.416643	NR_045353	ENSMUSG00000097370	4930467K11Rik	-	RIKEN cDNA 4930467K11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82847171-4	chr18	82846679	82847679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8718.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170919390-2	chr1	170918890	170919890	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160215, intron 4 of 4)	ORR1B2|LTR|ERVL-MaLR	-6449.0	NM_001029984	435653.0	Mm.337931	NM_001029984	ENSMUSG00000070524	Fcrlb	FREB-2|FREB2|FcRL2|Fcrlm2|Fcry|mFCRL2	Fc receptor-like B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126592147-4	chr8	126591658	126592658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164598, intron 1 of 1)	intron (NM_001164598, intron 1 of 1)	1278.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	9.0	11.0	22.0	17.5	28.0	33.5
Merged-chr5-53509727-4	chr5	53509224	53510224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46055.0	NM_001080928	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	3.0	6.0	1.0	0.0	1.0	1.5
Merged-chr13-5803033-4	chr13	5802541	5803541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55051.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3707223-4	chr7	3706677	3707677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029767)	TTS (NM_029767)	3136.0	NM_029767	76846.0	Mm.13944	NM_029767	ENSMUSG00000006333	Rps9	3010033P07Rik|AL022771|AL022885	ribosomal protein S9	protein-coding	43.0	145.5	137.5	59.0	146.5	136.5
Merged-chr7-17027653-5	chr7	17027134	17028134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011155, intron 1 of 12)	CpG	280.0	NM_011155	19060.0	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	48.0	71.5	81.0	14.5	108.0	81.0
Merged-chr9-114742896-4	chr9	114742339	114743339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026036, intron 3 of 3)	intron (NM_026036, intron 3 of 3)	11636.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	76.0	108.5	54.0	13.0	70.5	49.0
Merged-chr7-3693665-4	chr7	3693184	3694184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029934)	promoter-TSS (NM_029934)	74.0	NM_001164205	66078.0	Mm.379100	NM_024168	ENSMUSG00000035585	Tsen34	0610027F08Rik|Leng5	tRNA splicing endonuclease subunit 34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133413011-3	chr4	133412492	133413492	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016981, intron 2 of 11)	B1_Mus1|SINE|Alu	43216.0	NR_039582	100628620.0		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	37.0	17.5	27.0	50.5	53.5	79.0
Merged-chr4-95784358-4	chr4	95783867	95784867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029347, intron 8 of 10)	L2|LINE|L2	182668.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	3.0	9.5	3.5	5.0	18.0	5.5
Merged-chr4-145300340-4	chr4	145299856	145300856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009401, intron 2 of 12)	intron (NM_009401, intron 2 of 12)	14791.0	NM_009401	21941.0	Mm.12810	NM_009401	ENSMUSG00000028602	Tnfrsf8	Cd30|D1S166E|Ki|Ki-1	tumor necrosis factor receptor superfamily, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114668515-4	chr11	114667999	114668999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023372)	promoter-TSS (NM_023372)	-44.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70545290-4	chr14	70544794	70545794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_180588)	promoter-TSS (NM_180588)	43.0	NM_180588	72549.0	Mm.46742	NM_180588	ENSMUSG00000033589	Reep4	2700029E10Rik	receptor accessory protein 4	protein-coding	26.5	33.5	32.0	42.0	50.0	30.0
Merged-chr16-17807602-4	chr16	17807046	17808046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153790, exon 11 of 11)	exon (NM_153790, exon 11 of 11)	10264.0	NM_153790	224024.0	Mm.194950	NM_153790	ENSMUSG00000012017	Scarf2	NSR1|SREC-II|SRECRP-1|Scatf1|Srec2|SrecII	scavenger receptor class F, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7846942-4	chr9	7846446	7847446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9889.0	NM_007465	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95706432-4	chr3	95705926	95706926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-18509.0	NM_001301705	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	9.0	29.5	17.0	6.5	24.5	16.0
Merged-chr3-127796488-4	chr3	127795994	127796994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356430, intron 2 of 2)	intron (NM_001356430, intron 2 of 2)	5837.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	13.5	57.0	35.5	53.5	68.5	55.0
Merged-chr4-117156072-4	chr4	117155592	117156592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009098)	promoter-TSS (NM_009098)	40.0	NM_009098	20116.0	Mm.260904	NM_009098	ENSMUSG00000047675	Rps8	-	ribosomal protein S8	protein-coding	19.0	25.5	29.5	13.5	13.0	35.0
Merged-chr14-63131333-2	chr14	63130833	63131833	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	8871.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-32512100-4	chr6	32511607	32512607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040277, intron 1 of 1)	intron (NR_040277, intron 1 of 1)	966.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-144259122-2	chr5	144258622	144259622	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163709, intron 2 of 2)	intron (NM_001163709, intron 2 of 2)	3897.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19022436-2	chr7	19021936	19022936	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008260, intron 1 of 1)	intron (NM_008260, intron 1 of 1)	1103.0	NM_008260	15377.0	Mm.42260	NM_008260	ENSMUSG00000040891	Foxa3	Hnf-3g|Hnf3g|Tcf-3g|Tcf3g	forkhead box A3	protein-coding	4.5	0.0	0.0	0.0	0.0	0.0
Merged-chr15-37006565-4	chr15	37006074	37007074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026521, intron 1 of 3)	intron (NM_026521, intron 1 of 3)	828.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53324659-4	chr11	53324156	53325156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026479)	promoter-TSS (NM_026479)	-33.0	NM_026479	67966.0	Mm.288072	NM_026479	ENSMUSG00000018239	Zcchc10	2410141K03Rik|AA675321|D11Ertd416e	zinc finger, CCHC domain containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134455537-4	chr1	134455002	134456002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153128)	promoter-TSS (NM_153128)	-29.0	NM_153128	240756.0	Mm.87398	NM_153128	ENSMUSG00000026455	Klhl12	C3ip1	kelch-like 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24972137-4	chr7	24971669	24972669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010261, exon 2 of 5)	exon (NM_010261, exon 2 of 5)	559.0	NM_010261	14470.0	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110498746-4	chr12	110498243	110499243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081457, intron 1 of 12)	intron (NM_001081457, intron 1 of 12)	13004.0	NM_012023	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184049239-4	chr1	184048729	184049729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022019, intron 2 of 3)	intron (NM_022019, intron 2 of 3)	14848.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143069233-4	chr7	143068745	143069745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001115085)	promoter-TSS (NM_001115085)	-123.0	NM_020285	56844.0	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108723363-4	chr8	108722874	108723874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	8730.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104002536-4	chr9	104002032	104003032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172460)	promoter-TSS (NM_172460)	-12.0	NM_028721	74025.0	Mm.479273	NM_028721	ENSMUSG00000032558	Nphp3	3632410F03Rik|AI550417|C230078J01|D330020E01Rik|pcy	nephronophthisis 3 (adolescent)	protein-coding	2.0	2.5	5.5	2.0	10.0	2.5
Merged-chr3-69722712-4	chr3	69722232	69723232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133787, intron 2 of 15)	CpG-9222	677.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78261576-4	chr11	78261054	78262054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001002004)	promoter-TSS (NM_001002004)	-200.0	NM_001002004	72503.0	Mm.237103	NM_001002004	ENSMUSG00000010277	2610507B11Rik	AU022687|D11Bhm178e|D11Bhm179e|E1|Kiaa0100|mKIAA0100	RIKEN cDNA 2610507B11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170976077-4	chr1	170975580	170976580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010187)	promoter-TSS (NM_010187)	-9.0	NM_001077189	14130.0	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84122312-2	chr17	84121812	84122812	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	43652.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75787566-4	chr7	75787129	75788129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60709.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	14.0	27.0	7.5	10.5	26.5	15.0
Merged-chr4-132529483-4	chr4	132529009	132530009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5905.0	NM_007512	11983.0	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	16.5	28.5	13.5	23.5	30.0	14.5
Merged-chr13-52583501-4	chr13	52582990	52583990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198977)	promoter-TSS (NM_001198977)	53.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124373749-4	chr6	124373261	124374261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9275.0	NR_131162	72268.0	Mm.420740	NR_131162		1700027F06Rik	-	RIKEN cDNA 1700027F06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-109558822-7	chr5	109558305	109559305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016715, exon 1 of 8)	exon (NM_016715, exon 1 of 8)	188.0	NM_016715	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	40.0	109.5	49.5	46.0	105.0	81.0
Merged-chr5-112265664-4	chr5	112265149	112266149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312893, intron 4 of 5)	intron (NM_001312893, intron 4 of 5)	9829.0	NM_001312893	12960.0	Mm.29488	NM_023695	ENSMUSG00000029343	Crybb1	3110006K12Rik|BB1CRY	crystallin, beta B1	protein-coding	1.5	2.0	0.0	1.0	1.5	2.0
Merged-chr6-29468172-4	chr6	29467661	29468661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025381, intron 1 of 1)	intron (NM_025381, intron 1 of 1)	378.0	NM_025381	66144.0	Mm.371614	NM_025381	ENSMUSG00000004285	Atp6v1f	1110004G16Rik	ATPase, H+ transporting, lysosomal V1 subunit F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4070925-4	chr19	4070416	4071416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	-11469.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103984247-4	chr11	103983710	103984710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001304574, exon 5 of 5)	3' UTR (NM_001304574, exon 5 of 5)	17339.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116208091-4	chr6	116207597	116208597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026585)	promoter-TSS (NM_026585)	64.0	NM_026585	28006.0	Mm.28524	NM_026585	ENSMUSG00000024104	Washc2	A130095H06|C530005J20Rik|D6Wsu116e|Fam21	WASH complex subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-105779478-3	chr14	105778968	105779968	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117351.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140736594-2	chr5	140736094	140737094	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	intron (NM_173405, intron 2 of 7)	12467.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26244301-4	chr17	26243817	26244817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001206335)	promoter-TSS (NM_001206335)	-75.0	NM_001206335	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	78.0	244.0	199.0	86.5	209.5	140.5
Merged-chr7-45718003-4	chr7	45717488	45718488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_203280)	promoter-TSS (NM_203280)	14.0	NM_203280	56632.0	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	72.0	136.0	100.5	63.0	130.0	98.5
Merged-chr1-151250909-4	chr1	151250381	151251381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-93605.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-57123709-4	chr2	57123221	57124221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139509, intron 1 of 7)	CpG	282.0	NM_001139509	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50231965-2	chr11	50231465	50232465	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105884)	promoter-TSS (NR_105884)	-280.0	NR_105884	102466765.0		NR_105884	ENSMUSG00000098474	Mir6919	Gm27889|mmu-mir-6919	microRNA 6919	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107563229-4	chr9	107562744	107563744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019742)	promoter-TSS (NM_019742)	-11.0	NM_019742	80385.0	Mm.21739	NM_019742	ENSMUSG00000010054	Tusc2	1190001E22Rik|AA407686|Fus1|Lgcc|PAP|Pdap2	tumor suppressor candidate 2	protein-coding	14.0	3.5	14.5	8.0	19.0	10.5
Merged-chr7-109028079-2	chr7	109027579	109028579	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021885, intron 9 of 11)	intron (NM_021885, intron 9 of 11)	17199.0	NM_021885	22141.0	Mm.439722	NM_021885	ENSMUSG00000031028	Tub	rd5|tub	tubby bipartite transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3322398-4	chr19	3321917	3322917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013495)	promoter-TSS (NM_013495)	-884.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	11.5	90.5	32.5	9.5	85.0	55.0
Merged-chr10-80991301-2	chr10	80990801	80991801	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038655, intron 2 of 3)	B2_Mm2|SINE|B2	10064.0	NM_001038655	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-53384503-4	chr9	53383983	53384983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212445, intron 1 of 7)	CpG	460.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108990330-4	chr3	108989827	108990827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163567, intron 4 of 10)	intron (NM_001163567, intron 4 of 10)	37280.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	0.0	4.5	2.0	0.0	8.5	1.0
Merged-chr18-24142149-4	chr18	24141697	24142697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-20378.0	NM_172625	225280.0	Mm.258973	NM_172625	ENSMUSG00000047989	Ino80c	D030070L09Rik	INO80 complex subunit C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136894121-4	chr4	136893612	136894612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1198.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	18.0	75.5	55.5	92.0	144.5	75.5
Merged-chr16-33944003-2	chr16	33943503	33944503	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 11 of 14)	intron (NM_001145884, intron 11 of 14)	23035.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106408120-4	chr1	106407577	106408577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	138554.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	2.0	4.5	0.0	0.0	0.0	0.5
Merged-chr1-59914087-4	chr1	59913566	59914566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037725, intron 1 of 7)	intron (NM_001037725, intron 1 of 7)	1060.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	62.0	181.0	160.5	56.0	176.0	149.0
Merged-chr5-31362083-4	chr5	31361578	31362578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	64497.0	NM_144909	231103.0	Mm.100043	NM_144909	ENSMUSG00000059434	Gckr	GKRP	glucokinase regulatory protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24629011-4	chr7	24628492	24629492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001102613, exon 15 of 15)	3' UTR (NM_001102613, exon 15 of 15)	-7578.0	NM_133743	72434.0	Mm.281093	NM_133743	ENSMUSG00000057454	Lypd3	2310061G07Rik|C4.4a	Ly6/Plaur domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73442136-4	chr14	73441647	73442647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56858.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.0	4.5	0.0	15.0	101.0	33.5
Merged-chr1-51930811-4	chr1	51930309	51931309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14831.0	NM_010863	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	29.5	20.5	39.0	17.0	26.0	33.0
Merged-chr10-117418139-4	chr10	117417639	117418639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29296.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25495085-2	chr2	25494585	25495585	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1174.0	NM_029958	77701.0	Mm.99123	NM_029958	ENSMUSG00000026943	Lcn12	9230102M18Rik	lipocalin 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59541526-4	chr11	59541016	59542016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359638)	promoter-TSS (NM_001359638)	-53.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98920585-6	chr12	98920079	98921079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029553)	promoter-TSS (NM_029553)	5.0	NM_029553	76260.0	Mm.282660	NM_029553	ENSMUSG00000021013	Ttc8	0610012F22Rik|AV001447|BBS8	tetratricopeptide repeat domain 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99963025-4	chr7	99962548	99963548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175388, intron 1 of 5)	intron (NM_175388, intron 1 of 5)	17410.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	23.0	64.0	38.5	26.5	82.0	60.0
Merged-chr14-44986490-4	chr14	44986018	44987018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1593.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31235626-4	chr16	31235120	31236120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34382.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	22.5	70.5	75.0	24.5	104.0	38.0
Merged-chr2-45111273-4	chr2	45110758	45111758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289521)	promoter-TSS (NM_001289521)	120.0	NR_110572	433424.0	Mm.441408	NR_110571	ENSMUSG00000052248	Zeb2os	Gm13476|Zeb2nat	zinc finger E-box binding homeobox 2, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-58525905-4	chr3	58525417	58526417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030685)	promoter-TSS (NM_030685)	-33.0	NM_030685	28146.0	Mm.29702	NM_030685	ENSMUSG00000027808	Serp1	D3Ucla1|Ramp4	stress-associated endoplasmic reticulum protein 1	protein-coding	83.0	210.0	251.5	93.5	250.5	216.5
Merged-chr18-35772137-4	chr18	35771633	35772633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019912, intron 1 of 6)	CpG	574.0	NM_019912	56550.0	Mm.180052	NM_019912	ENSMUSG00000091896	Ube2d2a	1500034D03Rik|Ubc2e|Ube2d2|ubc4	ubiquitin-conjugating enzyme E2D 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-100162450-4	chr3	100161952	100162952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175552)	promoter-TSS (NM_175552)	-11.0	NM_010269	14547.0	Mm.279228	NM_010269	ENSMUSG00000027865	Gdap2	C77050|D3Ertd801e	ganglioside-induced differentiation-associated-protein 2	protein-coding	156.0	271.0	223.5	89.5	236.5	232.5
Merged-chr7-43671206-4	chr7	43670692	43671692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145582)	promoter-TSS (NM_145582)	-839.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-90998538-4	chr1	90998059	90999059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111312)	promoter-TSS (NM_001111312)	-168.0	NM_001111312	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26916969-4	chr17	26916481	26917481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053173)	promoter-TSS (NM_053173)	-110.0	NM_053173	16580.0	Mm.491138	NM_016761	ENSMUSG00000024301	Kifc5b	Hset|KNSL2|Kifc5a	kinesin family member C5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66297518-2	chr14	66297018	66298018	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038077)	promoter-TSS (NR_038077)	-389.0	NR_038077	69303.0	Mm.352258	NR_038077	ENSMUSG00000085984	1700001G11Rik	-	RIKEN cDNA 1700001G11 gene	ncRNA	0.0	11.5	4.0	2.5	4.5	3.0
Merged-chr7-143038738-4	chr7	143038237	143039237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015529, intron 2 of 3)	ERVL-B4-int|LTR|ERVL	-14013.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	0.0	3.5	1.5	1.5	6.5	2.0
Merged-chr6-136938866-4	chr6	136938371	136939371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301301, intron 1 of 5)	intron (NM_001301301, intron 1 of 5)	656.0	NM_001301303	11857.0	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	98.5	178.5	116.0	52.0	127.5	43.0
Merged-chr3-27153932-4	chr3	27153425	27154425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177626)	promoter-TSS (NM_001177626)	-47.0	NM_001177626	13605.0	Mm.261453	NM_007900	ENSMUSG00000027699	Ect2	AI528536	ect2 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123917979-4	chr4	123917457	123918457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017475, intron 1 of 6)	CpG	524.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	3.5	24.0	16.0	7.0	31.5	17.5
Merged-chr18-80196354-4	chr18	80195850	80196850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199197, intron 3 of 5)	Charlie1a|DNA|hAT-Charlie	4269.0	NM_199197	68731.0	Mm.186936	NM_199197	ENSMUSG00000024570	Rbfa	1110032A13Rik|AI595940	ribosome binding factor A	protein-coding	23.5	75.0	52.0	9.0	107.5	64.5
Merged-chr12-112644761-4	chr12	112644278	112645278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161737)	promoter-TSS (NM_001161737)	-50.0	NM_001161737	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152554334-4	chr1	152553829	152554829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001346119, exon 6 of 18)	exon (NM_001346119, exon 6 of 18)	70888.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119177928-3	chr4	119177415	119178415	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013848, exon 13 of 13)	3' UTR (NM_013848, exon 13 of 13)	-3720.0	NM_001145936	195522.0	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	12.0	25.5	39.5	2.0	0.0	1.5
Merged-chr12-55471341-2	chr12	55470841	55471841	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21306.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-5806030-4	chr10	5805505	5806505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025995)	promoter-TSS (NM_025995)	-540.0	NM_025995	67141.0	Mm.197520	NM_025995	ENSMUSG00000019773	Fbxo5	2510044I10Rik|C85305|Emi1|Fbxo31	F-box protein 5	protein-coding	6.0	33.0	22.5	8.5	40.5	19.5
Merged-chr7-80092633-4	chr7	80092134	80093134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001146000, exon 6 of 6)	3' UTR (NM_001146000, exon 6 of 6)	-17377.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74304076-4	chr1	74303579	74304579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027154, intron 1 of 11)	CpG	257.0	NM_027154	69660.0	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135779141-2	chr5	135778641	135779641	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289554)	promoter-TSS (NM_001289554)	492.0	NM_008617	17448.0	Mm.297096	NM_008617	ENSMUSG00000019179	Mdh2	MDH|Mdh-2|Mor-1|Mor1	malate dehydrogenase 2, NAD (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9034685-4	chr3	9034180	9035180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27284.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	62.0	165.0	116.0	20.5	63.5	31.0
Merged-chr7-141467392-4	chr7	141466882	141467882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009842)	promoter-TSS (NM_009842)	20.0	NM_001111049	12476.0	Mm.30246	NM_009842	ENSMUSG00000025510	Cd151	PETA-3|SFA-1|Tspan24	CD151 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21476977-4	chr19	21476478	21477478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4317.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	2.0	4.5	2.5	9.0	0.5	0.0
Merged-chr10-121375458-4	chr10	121374964	121375964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 3 of 13)	intron (NM_029364, intron 3 of 13)	10374.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	48.5	157.5	108.0	53.0	141.5	127.0
Merged-chr5-112341523-4	chr5	112341022	112342022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153106, intron 1 of 6)	intron (NR_153106, intron 1 of 6)	1518.0	NM_001359388	70118.0	Mm.172947	NM_027323	ENSMUSG00000029346	Srrd	2810002G02Rik|Srr1	SRR1 domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-34495314-4	chr15	34494809	34495809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008287)	promoter-TSS (NM_008287)	-2.0	NM_026340	67724.0	Mm.248779	NM_026340	ENSMUSG00000022325	Pop1	4932434G09Rik	processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	4.0	4.5	3.0	19.0	6.0	5.5
Merged-chr9-66879700-4	chr9	66879186	66880186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	L1MA4|LINE|L1	40019.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94923467-4	chr10	94922971	94923971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 1 of 30)	intron (NM_018797, intron 1 of 30)	21107.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-10439557-4	chr14	10439052	10440052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 4 of 9)	intron (NM_001360141, intron 4 of 9)	13906.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139310751-4	chr4	139310222	139311222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025337)	promoter-TSS (NM_025337)	-14.0	NM_145384	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	11.0	34.5	20.5	20.5	22.5	33.5
Merged-chr2-155384031-1	chr2	155383531	155384531	+	1000.0	f1_c57bl6.idr	intron (NM_178111, intron 1 of 3)	B1_Mus2|SINE|Alu	2175.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	0.0	20.0	10.0	0.0	6.5	3.0
Merged-chr8-123040278-4	chr8	123039790	123040790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	1994.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154568730-2	chr2	154568230	154569230	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007891, intron 1 of 6)	intron (NM_007891, intron 1 of 6)	696.0	NM_001291105	13555.0	Mm.18036	NM_007891	ENSMUSG00000027490	E2f1	E2F-1|Tg(Wnt1-cre)2Sor|mKIAA4009	E2F transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136141679-4	chr1	136141175	136142175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	10285.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106789090-4	chr9	106788587	106789587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_030730, exon 1 of 22)	5' UTR (NM_030730, exon 1 of 22)	126.0	NM_030730	81000.0	Mm.246689	NM_030730	ENSMUSG00000040661	Rad54l2	Arip4|D130058C05|G630026H09Rik|Srisnf2l	RAD54 like 2 (S. cerevisiae)	protein-coding	17.0	10.0	11.0	4.5	21.0	15.0
Merged-chr19-46501464-6	chr19	46500969	46501969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053100)	promoter-TSS (NM_053100)	-179.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119058149-4	chr11	119057647	119058647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17234.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48418435-4	chr17	48417934	48418934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009694)	TTS (NM_009694)	7984.0	NM_001357904	106821.0	Mm.203943	NM_207219	ENSMUSG00000040771	Oard1	AI314976|AW558560	O-acyl-ADP-ribose deacylase 1	protein-coding	16.0	30.0	26.0	17.0	39.0	28.0
Merged-chr18-60807442-4	chr18	60806928	60807928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042605, intron 1 of 8)	intron (NM_001042605, intron 1 of 8)	3579.0	NM_010545	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	118.5	413.0	229.0	74.0	196.0	130.5
Merged-chr2-103760576-2	chr2	103760076	103761076	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153126, intron 1 of 28)	intron (NM_153126, intron 1 of 28)	694.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-97535124-4	chr16	97534637	97535637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003508)	promoter-TSS (NR_003508)	-944.0	NR_003508	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	77.0	187.5	115.5	71.0	215.0	155.0
Merged-chr15-102966637-2	chr15	102966137	102967137	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010462)	promoter-TSS (NM_010462)	-159.0	NM_010462	209448.0	Mm.31665	NM_010462	ENSMUSG00000022484	Hoxc10	AI506621|Hox-3.6	homeobox C10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138972858-4	chr4	138972358	138973358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029857)	promoter-TSS (NM_029857)	-47.0	NM_029857	77056.0	Mm.122336	NM_029857	ENSMUSG00000041143	Tmco4	4632413C14Rik|AI430825	transmembrane and coiled-coil domains 4	protein-coding	116.0	212.5	172.5	125.0	189.0	175.5
Merged-chr6-122669611-4	chr6	122669123	122670123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37866.0	NM_001289831	71950.0	Mm.6047	NM_028016	ENSMUSG00000012396	Nanog	2410002E02Rik|ENK|ecat4	Nanog homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54687767-4	chr13	54687262	54688262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146025)	promoter-TSS (NM_001146025)	46.0	NM_001146025	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	40.5	140.0	127.0	42.5	143.5	127.0
Merged-chr16-20097517-4	chr16	20097020	20098020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029436)	promoter-TSS (NM_029436)	-34.0	NM_029436	75785.0	Mm.392450	NM_029436	ENSMUSG00000062901	Klhl24	1110046J11Rik|4930429H24Rik|6530402O20Rik|C85082	kelch-like 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3426779-4	chr12	3426288	3427288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030694)	promoter-TSS (NR_030694)	-41.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56040312-4	chr17	56039822	56040822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013733)	promoter-TSS (NM_013733)	-94.0	NM_013733	27221.0	Mm.391010	NM_013733	ENSMUSG00000002835	Chaf1a	AL023013|AL024058|CAF-1|Cac1p	chromatin assembly factor 1, subunit A (p150)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27941240-4	chr15	27940733	27941733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	84615.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45799052-4	chr4	45798544	45799544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028270)	promoter-TSS (NM_028270)	22.0	NM_028270	72535.0	Mm.331583	NM_028270	ENSMUSG00000035561	Aldh1b1	2700007F14Rik	aldehyde dehydrogenase 1 family, member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98918247-4	chr15	98917754	98918754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029098)	promoter-TSS (NM_029098)	-156.0	NM_029098	74775.0	Mm.385020	NM_029098	ENSMUSG00000022999	Lmbr1l	1110013E13Rik|AA415653|D15Ertd735e|Limr	limb region 1 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-63240979-4	chr10	63240477	63241477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	-2820.0	NM_030114	67345.0	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52615229-4	chr13	52614737	52615737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 3 of 13)	intron (NM_011518, intron 3 of 13)	18355.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54893998-4	chr14	54893493	54894493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019402)	promoter-TSS (NM_019402)	-150.0	NM_019402	54196.0	Mm.7723	NM_019402	ENSMUSG00000022194	Pabpn1	PAB2|Pabp3|mPABII	poly(A) binding protein, nuclear 1	protein-coding	10.5	53.0	27.5	13.5	56.0	36.0
Merged-chr8-69717060-4	chr8	69716574	69717574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039965)	promoter-TSS (NM_001039965)	-172.0	NM_001039965	66869.0	Mm.334581	NM_181274	ENSMUSG00000054648	Zfp869	1200003I07Rik	zinc finger protein 869	protein-coding	64.0	109.0	82.5	38.5	97.5	72.5
Merged-chr4-46077045-4	chr4	46076547	46077547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021883, intron 2 of 9)	intron (NM_021883, intron 2 of 9)	37825.0	NM_021883	21916.0	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	1.0	19.5	7.0	10.5	13.0	11.0
Merged-chr1-190910462-4	chr1	190909967	190910967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178775, intron 1 of 14)	MIRb|SINE|MIR	1303.0	NM_178775	320119.0	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	89.0	174.5	131.5	110.0	263.0	203.0
Merged-chr1-153487716-4	chr1	153487205	153488205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007842)	promoter-TSS (NM_007842)	-45.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69185185-2	chr12	69184685	69185685	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_146035, exon 1 of 1)	exon (NM_146035, exon 1 of 1)	1027.0	NM_146035	217664.0	Mm.206642	NM_146035	ENSMUSG00000043998	Mgat2	AA407964|CDGS2|GLCNACTII|GNT-II|GNT2	mannoside acetylglucosaminyltransferase 2	protein-coding	21.0	19.0	45.0	6.5	6.5	17.5
Merged-chr4-9634322-4	chr4	9633828	9634828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177856, intron 4 of 4)	intron (NM_001177856, intron 4 of 4)	9389.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	13.5	31.0	27.5	33.0	29.5	18.5
Merged-chr11-121353834-2	chr11	121353334	121354334	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025793, intron 1 of 9)	CpG	613.0	NM_025793	66840.0	Mm.103986	NM_025793	ENSMUSG00000025173	Wdr45b	0610008N23Rik|AA408735|D16Bwg0193e|WIPI-3|Wdr45l	WD repeat domain 45B	protein-coding	7.5	9.0	11.0	10.5	6.5	8.0
Merged-chr8-105264019-2	chr8	105263519	105264519	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015821)	promoter-TSS (NM_015821)	575.0	NM_001033161	71609.0	Mm.264255	NM_001033161	ENSMUSG00000031887	Tradd	9130005N23Rik|AA930854	TNFRSF1A-associated via death domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95858781-4	chr11	95858285	95859285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045187)	promoter-TSS (NR_045187)	-32.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	72.5	159.0	99.0	82.0	136.0	99.0
Merged-chr7-105762956-4	chr7	105762459	105763459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001162943, exon 10 of 21)	exon (NM_001162943, exon 10 of 21)	-10724.0	NM_009906	12751.0	Mm.20837	NM_009906	ENSMUSG00000030894	Tpp1	Cln2|LPIC|TPP-1|TPP-I	tripeptidyl peptidase I	protein-coding	0.5	12.5	2.0	3.5	4.0	2.5
Merged-chr14-44068062-2	chr14	44067562	44068562	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34592.0	NM_007895	13587.0	Mm.327386	NM_007895	ENSMUSG00000072596	Ear2	EAR-13|EAR-2|ECP|ECP 2|Raf3|Rnase2	eosinophil-associated, ribonuclease A family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95015609-4	chr3	95015113	95016113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030074)	promoter-TSS (NM_030074)	-156.0	NM_001357863	78266.0	Mm.389478	NM_030074	ENSMUSG00000019338	Zfp687	4931408L03Rik|Znf687|mKIAA1441	zinc finger protein 687	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128381217-4	chr7	128380721	128381721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 4 of 4)	intron (NM_026418, intron 4 of 4)	36951.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127387222-4	chr7	127386720	127387720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030226)	promoter-TSS (NM_030226)	-54.0	NM_030226	78921.0	Mm.200950	NM_030226	ENSMUSG00000030823	9130019O22Rik	-	RIKEN cDNA 9130019O22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90231610-4	chr3	90231104	90232104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_206924)	promoter-TSS (NM_206924)	7.0	NM_206924	23922.0	Mm.13912	NM_206924	ENSMUSG00000027937	Jtb	Gm622	jumping translocation breakpoint	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105815481-4	chr3	105814997	105815997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045845)	promoter-TSS (NR_045845)	-70.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	58.5	124.0	128.5	55.0	77.0	83.0
Merged-chr15-4816978-4	chr15	4816476	4817476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81761.0	NM_001166066	223825.0	Mm.159281	NM_001166066	ENSMUSG00000022155	Mroh2b	4930455B06Rik|Heatr7b2|SPIF	maestro heat-like repeat family member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129783866-2	chr4	129783366	129784366	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID2|SINE|ID	-36613.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	5.5	33.5	11.5	9.0	43.5	19.5
Merged-chr17-84072068-4	chr17	84071564	84072564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6596.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116007424-4	chr3	116006939	116007939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023214)	promoter-TSS (NM_023214)	-10.0	NM_021388	58193.0	Mm.41739	NM_021388	ENSMUSG00000027963	Extl2	3000001D04Rik|AW146439	exostoses (multiple)-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25296762-4	chr10	25296254	25297254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 1 of 7)	CpG	2409.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	18.0	42.0	22.0	7.0	15.0	12.0
Merged-chr12-85474460-3	chr12	85473946	85474946	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010234, intron 1 of 3)	CpG	556.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-97337108-4	chr1	97336628	97337628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-208825.0	NM_028942	74441.0	Mm.60362	NM_028942	ENSMUSG00000026331	Slco6c1	4933404A18Rik|C79179	solute carrier organic anion transporter family, member 6c1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-69089359-4	chr14	69088849	69089849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60060.0	NM_009285	20855.0	Mm.20911	NM_009285	ENSMUSG00000014813	Stc1	Stc	stanniocalcin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135612972-4	chr3	135612466	135613466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 11 of 24)	intron (NM_008689, intron 11 of 24)	78581.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.5	14.5	2.5	0.0	5.5	4.5
Merged-chr17-35809654-4	chr17	35809171	35810171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12042.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	1.0	5.0	10.0	1.5	2.5	7.0
Merged-chr17-45613206-4	chr17	45612729	45613729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11127.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139169946-4	chr4	139169446	139170446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10709.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	163.0	334.5	256.0	194.5	459.0	475.5
Merged-chr12-69168721-5	chr12	69168268	69169268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081406)	promoter-TSS (NM_001081406)	-46.0	NR_155206	69706.0	Mm.28847	NM_001081406	ENSMUSG00000034883	Lrr1	2410005L11Rik|AU021780|LRR-1|Ppil5	leucine rich repeat protein 1	protein-coding	9.5	13.5	18.0	4.0	10.5	16.0
Merged-chr1-95665965-2	chr1	95665465	95666465	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159745, intron 1 of 3)	intron (NM_001159745, intron 1 of 3)	1629.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148685969-4	chr2	148685460	148686460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355689, intron 2 of 5)	intron (NM_001355689, intron 2 of 5)	4840.0	NM_028986	74533.0	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-16075045-2	chr16	16074545	16075545	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 5 of 18)	Lx2B2|LINE|L1	71806.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36598513-4	chr16	36597999	36598999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36365.0	NM_013803	12374.0	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84174041-2	chr12	84173541	84174541	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163502, exon 2 of 13)	exon (NM_001163502, exon 2 of 13)	19974.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-115729364-4	chr3	115728877	115729877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14322.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	1.5	5.0	1.0	0.0	0.0	0.0
Merged-chr7-121080888-4	chr7	121080366	121081366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-2572.0	NM_139310	246190.0	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108134861-4	chr3	108134335	108135335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010306, intron 1 of 8)	intron (NM_010306, intron 1 of 8)	11317.0	NM_010306	14679.0	Mm.271703	NM_010306	ENSMUSG00000000001	Gnai3	AI158965|AW537698|Galphai3|Gnai-3	guanine nucleotide binding protein (G protein), alpha inhibiting 3	protein-coding	0.0	0.0	2.5	2.0	4.5	7.5
Merged-chr16-95708836-4	chr16	95708347	95709347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011809, intron 2 of 9)	intron (NM_011809, intron 2 of 9)	6440.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-65107815-4	chr1	65107318	65108318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001285881, exon 8 of 8)	3' UTR (NM_001285881, exon 8 of 8)	-4455.0	NM_007774	12964.0	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45013496-4	chr2	45013013	45014013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 4 of 9)	intron (NM_001355291, intron 4 of 9)	9664.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149445472-4	chr4	149444979	149445979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	9489.0	NM_022020	63954.0	Mm.46023	NM_022020	ENSMUSG00000028996	Rbp7	1110002J23Rik|CRBP-III	retinol binding protein 7, cellular	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103098223-2	chr14	103097723	103098723	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360342, intron 1 of 4)	intron (NM_001360342, intron 1 of 4)	781.0	NM_001360341	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111420105-2	chr12	111419605	111420605	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289487, intron 2 of 13)	intron (NM_001289487, intron 2 of 13)	2660.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54565422-4	chr13	54564941	54565941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252648)	promoter-TSS (NM_001252648)	-59.0	NM_133797	97820.0	Mm.24593	NM_133797	ENSMUSG00000025871	4833439L19Rik	4930558H15Rik|C81457|Kiaa1191|P33monox	RIKEN cDNA 4833439L19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87130853-4	chr6	87130371	87131371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	26125.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111908144-4	chr12	111907675	111908675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011625)	promoter-TSS (NM_011625)	-120.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-157517580-2	chr1	157517080	157518080	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033354, intron 2 of 27)	intron (NM_033354, intron 2 of 27)	-5857.0	NR_151610	102632813.0	Mm.420137	NR_151610		Gm15486	-	predicted gene 15486	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121591243-4	chr10	121590741	121591741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359618, intron 24 of 24)	MTD|LTR|ERVL-MaLR	-4447.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	29.0	40.0	54.5	1.0	11.0	15.5
Merged-chr4-81743967-4	chr4	81743478	81744478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-256965.0	NR_030570	100124446.0		NR_030570	ENSMUSG00000077941	Mir466h	Mirn466h	microRNA 466h	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102944238-4	chr2	102943727	102944727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42562.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117352471-4	chr2	117351977	117352977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-9600.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-73630389-4	chr5	73629897	73630897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153568, intron 1 of 4)	intron (NM_153568, intron 1 of 4)	2024.0	NM_153568	231296.0	Mm.168948	NM_153568	ENSMUSG00000067206	Lrrc66	-	leucine rich repeat containing 66	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108853081-4	chr9	108852552	108853552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134420)	promoter-TSS (NM_134420)	-991.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-24542098-4	chr9	24541598	24542598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	SYNREP_MM|Satellite|Satellite	-38958.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20794064-4	chr14	20793573	20794573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039138)	promoter-TSS (NM_001039138)	15.0	NM_001039138	12325.0	Mm.235182	NM_178597	ENSMUSG00000021820	Camk2g	Camkg	calcium/calmodulin-dependent protein kinase II gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-10077320-4	chr3	10076795	10077795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10982.0	NR_045710	100041480.0	Mm.455632	NR_045710	ENSMUSG00000049230	Gm9833	-	myelin basic protein expression factor 2, repressor pseudogene	pseudo	5.0	3.0	3.0	0.0	4.5	0.0
Merged-chr2-58183861-4	chr2	58183351	58184351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19877.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155133511-4	chr2	155133016	155134016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008395)	promoter-TSS (NM_008395)	35.0	NM_008395	16396.0	Mm.208286	NM_008395	ENSMUSG00000027598	Itch	6720481N21Rik|8030492O04Rik|A130065M08|AIP4|C230047C07Rik	itchy, E3 ubiquitin protein ligase	protein-coding	21.0	60.5	20.0	10.5	36.5	41.5
Merged-chr5-148559648-4	chr5	148559147	148560147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-6859.0	NM_001359199	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	24.0	63.5	47.5	18.0	34.5	48.5
Merged-chr19-4099975-4	chr19	4099502	4100502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_075078)	promoter-TSS (NR_075078)	4.0	NR_075078	18739.0	Mm.1860	NM_008851	ENSMUSG00000024851	Pitpnm1	DRES9|Mpt-1|Nir-2|PITPnm 1|Pitpnm|R75447|Rd9|RdgB|RdgB1	phosphatidylinositol transfer protein, membrane-associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58875975-4	chr15	58875466	58876466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026642, exon 1 of 1)	3' UTR (NM_026642, exon 1 of 1)	3317.0	NM_026642	68260.0	Mm.278805	NM_026642	ENSMUSG00000037085	Trmt12	4632406N01Rik|AI449275|Tyw2	tRNA methyltranferase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131053402-4	chr1	131052886	131053886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008551)	TTS (NM_008551)	33541.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	27.5	34.5	25.5	6.0	26.5	20.0
Merged-chr8-126839660-4	chr8	126839150	126840150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9370.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-101552962-4	chr9	101552453	101553453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	210759.0	NR_110509	102633035.0	Mm.411422	NR_110509	ENSMUSG00000101941	Gm28979	-	predicted gene 28979	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-14953657-4	chr17	14953154	14954154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024250, intron 7 of 11)	intron (NM_024250, intron 7 of 11)	7606.0	NM_001360983	72057.0	Mm.440085	NM_024250	ENSMUSG00000023883	Phf10	1810055P05Rik|AV024533	PHD finger protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127627307-2	chr10	127626807	127627807	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-6159.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	5.5	0.0	0.0	0.0	4.5	1.5
Merged-chr19-12585476-4	chr19	12584979	12585979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_015503)	TTS (NR_015503)	11087.0	NR_015503	74333.0	Mm.329744	NR_015503	ENSMUSG00000086213	A330040F15Rik	-	RIKEN cDNA A330040F15 gene	ncRNA	36.0	143.0	127.5	19.0	111.5	73.0
Merged-chr5-125394369-4	chr5	125393852	125394852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-4335.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	21.5	63.0	30.0	27.5	69.5	39.5
Merged-chr8-24419959-3	chr8	24419470	24420470	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18976.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45367304-7	chr7	45366840	45367840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029741)	promoter-TSS (NM_029741)	107.0	NR_027802	50994.0	Mm.389897	NM_016664	ENSMUSG00000091510	Mtag2	MAG	metastasis associated gene 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4190472-2	chr12	4189972	4190972	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 3 of 21)	intron (NM_001159537, intron 3 of 21)	43493.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62216916-4	chr10	62216413	62217413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 1 of 7)	intron (NM_197996, intron 1 of 7)	14305.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-81982730-4	chr3	81982224	81983224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-6996.0	NM_019911	56720.0	Mm.258622	NM_019911	ENSMUSG00000028011	Tdo2	AA407491|TDO|TO|chky	tryptophan 2,3-dioxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70416598-2	chr9	70416098	70417098	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007630, intron 3 of 8)	B3A|SINE|B2	4956.0	NM_007630	12442.0	Mm.22592	NM_007630	ENSMUSG00000032218	Ccnb2	CycB2	cyclin B2	protein-coding	5.0	0.0	0.0	0.5	0.0	1.5
Merged-chr9-111058068-4	chr9	111057504	111058504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302376)	promoter-TSS (NM_001302376)	-486.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	176.5	503.0	247.5	284.5	700.5	356.0
Merged-chr8-106145509-4	chr8	106145002	106146002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-4852.0	NM_133792	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120166714-2	chr2	120166214	120167214	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177845, exon 20 of 20)	3' UTR (NM_177845, exon 20 of 20)	-12139.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	0.5	0.0	0.0	1.5	0.0	1.0
Merged-chr17-51178738-4	chr17	51178229	51179229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 1 of 21)	CpG	623.0	NM_028162	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	111.0	246.0	213.0	109.5	243.5	226.0
Merged-chr15-89089069-4	chr15	89088573	89089573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027905)	promoter-TSS (NM_027905)	35.0	NM_027905	223776.0	Mm.44763	NM_027905	ENSMUSG00000035757	Selenoo	1300018J18Rik|Selo	selenoprotein O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94811952-4	chr8	94811435	94812435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011332, exon 3 of 3)	3' UTR (NM_011332, exon 3 of 3)	1482.0	NM_011332	20295.0	Mm.41988	NM_011332	ENSMUSG00000031780	Ccl17	Abcd-2|Scya17|Scya17l|Tarc	chemokine (C-C motif) ligand 17	protein-coding	13.5	3.0	5.0	16.5	17.0	11.0
Merged-chr6-122875018-2	chr6	122874518	122875518	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026267, intron 1 of 7)	CpG	461.0	NM_026267	67602.0	Mm.288114	NM_026267	ENSMUSG00000030327	Necap1	1200016B17Rik|AI747569|mFLJ00061	NECAP endocytosis associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-56598398-4	chr10	56597902	56598902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	166421.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65884364-2	chr17	65883829	65884829	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009067, intron 1 of 9)	CpG	594.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	33.5	90.5	46.0	24.0	54.0	65.5
Merged-chr4-123564684-4	chr4	123564179	123565179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-51741.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108694009-4	chr8	108693515	108694515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20629.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-83688149-4	chr12	83687658	83688658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008943)	promoter-TSS (NM_008943)	6.0	NM_001362271	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120096746-2	chr8	120096246	120097246	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133967, intron 1 of 7)	intron (NM_133967, intron 1 of 7)	4726.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-112492062-1	chr2	112491562	112492562	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_028844)	promoter-TSS (NM_028844)	-902.0	NM_028844	74268.0	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	7.0	13.0	19.0	5.0	3.0	9.0
Merged-chr18-53261442-4	chr18	53260929	53261929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	15767.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	19.5	16.0	20.5	2.0	19.0	28.0
Merged-chr5-76048277-4	chr5	76047746	76048746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69818.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53764034-1	chr11	53763534	53764534	+	1000.0	f0_balb.idr	promoter-TSS (NR_106131)	promoter-TSS (NR_106131)	-380.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-85090600-4	chr17	85090094	85091094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163624)	promoter-TSS (NM_001163624)	-106.0	NM_028576	73582.0	Mm.260753	NM_028576	ENSMUSG00000071037	Camkmt	1700106N22Rik|AI480743|AV099781|CLNMT|CaM KMT	calmodulin-lysine N-methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123228237-4	chr5	123227732	123228732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026000)	promoter-TSS (NM_026000)	42.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	25.0	34.5	19.5	18.0	30.0	17.0
Merged-chr10-86074313-3	chr10	86073809	86074809	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013722, intron 8 of 13)	intron (NM_013722, intron 8 of 13)	-21545.0	NR_038024	78170.0	Mm.444790	NR_038024	ENSMUSG00000112493	4930486F22Rik	-	RIKEN cDNA 4930486F22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112865005-4	chr12	112864486	112865486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4070.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17624617-4	chr17	17624109	17625109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172827)	promoter-TSS (NM_172827)	-120.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	134.5	389.0	285.0	145.5	459.5	319.0
Merged-chr7-19421464-4	chr7	19420952	19421952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073014)	promoter-TSS (NR_073014)	-35.0	NR_073015	100503495.0	Mm.410762	NR_073014	ENSMUSG00000040705	A930016O22Rik	-	RIKEN cDNA A930016O22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32721293-2	chr2	32720793	32721793	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013781, intron 1 of 11)	intron (NM_013781, intron 1 of 11)	238.0	NM_013781	27387.0	Mm.9593	NM_013781	ENSMUSG00000059013	Sh2d3c	Chat|Nsp3|Shep1	SH2 domain containing 3C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170162005-4	chr1	170161507	170162507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133806, intron 2 of 10)	intron (NM_133806, intron 2 of 10)	12957.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83442572-4	chr8	83442083	83443083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019708)	promoter-TSS (NM_019708)	79.0	NM_001285992	56367.0	Mm.246911	NM_019708	ENSMUSG00000063253	Scoc	0610011C06Rik|2810002J11Rik|AA415030|SCOCO	short coiled-coil protein	protein-coding	13.5	12.5	6.0	1.5	9.5	17.0
Merged-chr14-47395848-3	chr14	47395344	47396344	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144553, exon 14 of 19)	exon (NM_144553, exon 14 of 19)	21984.0	NM_001145953	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	12.5	22.0	10.5	56.5	52.0	68.5
Merged-chr4-119738834-4	chr4	119738329	119739329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75849.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125558831-4	chr8	125558330	125559330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	11033.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	31.5	64.5	37.5	34.5	78.5	58.5
Merged-chr11-67579296-4	chr11	67578782	67579782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008088, intron 1 of 13)	intron (NM_008088, intron 1 of 13)	-7218.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	4.5	4.5	1.0	6.0	1.5	1.0
Merged-chr8-3628171-2	chr8	3627671	3628671	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-2626.0	NM_001129803	18545.0	Mm.440882	NM_008790	ENSMUSG00000004630	Pcp2	L7|Pcp-2	Purkinje cell protein 2 (L7)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-183221476-4	chr1	183220978	183221978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026866)	promoter-TSS (NM_026866)	51.0	NM_026866	68897.0	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched RND transporter family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-172346642-2	chr2	172346142	172347142	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025912, intron 1 of 2)	intron (NM_025912, intron 1 of 2)	1065.0	NM_025912	67017.0	Mm.30013	NM_025912	ENSMUSG00000027495	Fam210b	2010011I20Rik|AI430961|AV108736	family with sequence similarity 210, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-87387454-4	chr12	87386947	87387947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011479, intron 1 of 11)	intron (NM_011479, intron 1 of 11)	908.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62163158-2	chr18	62162658	62163658	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16823.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89411977-4	chr3	89411481	89412481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362375)	promoter-TSS (NM_001362375)	-100.0	NR_155545	319945.0	Mm.258142	NM_177041	ENSMUSG00000042642	Flad1	A930017E24Rik|Pp591	flavin adenine dinucleotide synthetase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40663921-4	chr19	40663402	40664402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	4132.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	17.0	17.0	27.0	15.5	17.0	31.5
Merged-chr19-4000757-2	chr19	4000257	4001257	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_025529, exon 1 of 4)	exon (NM_025529, exon 1 of 4)	177.0	NM_025529	66387.0	Mm.259222	NM_025529	ENSMUSG00000110949	Nudt8	2310039H17Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73490132-4	chr13	73489635	73490635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145376, intron 3 of 13)	MTD|LTR|ERVL-MaLR	22752.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60210537-4	chr2	60210033	60211033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020575, intron 1 of 9)	intron (NM_020575, intron 1 of 9)	597.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45759042-4	chr17	45758553	45759553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	24547.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	2.0	3.5	1.5	2.0	5.5	1.5
Merged-chr2-102975436-2	chr2	102974936	102975936	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73771.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116735516-4	chr6	116735017	116736017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER44B|DNA|TcMar-Tigger	-18759.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-58567289-4	chr2	58566786	58567786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110205)	promoter-TSS (NM_001110205)	-48.0	NM_001289660	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114293573-4	chr6	114293072	114294072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178703, intron 1 of 15)	intron (NM_178703, intron 1 of 15)	10937.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81649041-4	chr10	81648534	81649534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142963)	promoter-TSS (NM_001142963)	-35.0	NM_001142963	100233208.0	Mm.327168	NM_001142963	ENSMUSG00000096856	Gm10778	-	predicted gene 10778	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64313373-2	chr13	64312877	64313877	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025370)	promoter-TSS (NM_025370)	-667.0	NM_025370	66129.0	Mm.491110	NM_025370	ENSMUSG00000021482	Aaed1	1110018J18Rik|AI849003	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding	6.5	3.5	2.0	12.0	5.0	2.0
Merged-chr16-4913858-4	chr16	4913337	4914337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 5 of 17)	B3|SINE|B2	-25274.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23684817-4	chr13	23684308	23685308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178189)	promoter-TSS (NM_178189)	609.0	NM_023422	68024.0	Mm.261676	NM_023422	ENSMUSG00000018102	Hist1h2bc	2610022J01Rik|H2bfs|R74621	histone cluster 1, H2bc	protein-coding	153.5	313.0	244.5	137.0	354.0	187.5
Merged-chr17-63864372-4	chr17	63863881	63864881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 1 of 18)	CpG	400.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6910502-1	chr19	6910002	6911002	+	1000.0	f0_balb.idr	promoter-TSS (NM_001358444)	promoter-TSS (NM_001358444)	-396.0	NM_001358444	54683.0	Mm.279782	NM_012021	ENSMUSG00000024953	Prdx5	AOEB166|AOPP|PLP|Pmp20|Prdx6|PrxV	peroxiredoxin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120911683-4	chr14	120911170	120912170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023579, intron 1 of 25)	CpG	476.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86401190-2	chr1	86400690	86401690	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11829.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118355339-4	chr11	118354838	118355838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011594)	promoter-TSS (NM_011594)	73.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111070804-4	chr9	111070306	111071306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13288.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6301131-2	chr19	6300631	6301631	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5326.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58519804-2	chr16	58519304	58520304	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 1 of 10)	intron (NM_001357433, intron 1 of 10)	3622.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.0	0.0	1.0	0.0	4.5	0.5
Merged-chr9-120805007-1	chr9	120804507	120805507	+	1000.0	f0_balb.idr	Intergenic	Intergenic	110243.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56722856-4	chr19	56722363	56723363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007419, exon 1 of 1)	exon (NM_007419, exon 1 of 1)	491.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	37.0	51.0	63.0	23.0	79.5	55.5
Merged-chr7-96546139-4	chr7	96545639	96546639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310762, intron 4 of 32)	intron (NM_001310762, intron 4 of 32)	-204175.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	8.5	14.0	20.0	26.0	31.5	46.0
Merged-chr4-101198529-4	chr4	101198041	101199041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 1 of 24)	B1F2|SINE|Alu	66741.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-37597541-4	chr16	37597034	37598034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027778, intron 3 of 12)	intron (NR_027778, intron 3 of 12)	17381.0	NM_013547	15233.0	Mm.157442	NM_013547	ENSMUSG00000022821	Hgd	Hgo|aku	homogentisate 1, 2-dioxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39230878-4	chr6	39230392	39231392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	-24119.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23869143-4	chr18	23868653	23869653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	65183.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-54736275-2	chr3	54735815	54736815	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027148)	promoter-TSS (NM_027148)	776.0	NM_025442	66248.0	Mm.144218	NM_025442	ENSMUSG00000036632	Alg5	1500026A19Rik|2600005J22Rik|AV009521|AV170001|AW545564	asparagine-linked glycosylation 5 (dolichyl-phosphate beta-glucosyltransferase)	protein-coding	5.5	19.0	12.5	3.0	7.0	7.0
Merged-chr2-32260082-4	chr2	32259563	32260563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011675)	promoter-TSS (NM_011675)	42.0	NM_011675	22245.0	Mm.425076	NM_011675	ENSMUSG00000002550	Uck1	URK1|Umpk	uridine-cytidine kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126820103-4	chr4	126819597	126820597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035525, intron 5 of 23)	intron (NM_001035525, intron 5 of 23)	66327.0	NM_001035526	100317.0	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127668946-4	chr10	127668441	127669441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045171)	TTS (NR_045171)	1818.0	NR_045171	72243.0	Mm.482902	NR_045171	ENSMUSG00000040195	1700012D01Rik	-	RIKEN cDNA 1700012D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93914042-4	chr16	93913532	93914532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15535.0	NM_001165925	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	200.5	399.0	298.0	79.0	228.5	162.0
Merged-chr7-80830616-4	chr7	80830087	80831087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27256.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	17.5	37.0	31.0	14.0	33.5	26.0
Merged-chr9-107587591-4	chr9	107587085	107588085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025903)	promoter-TSS (NM_025903)	-133.0	NM_025903	15983.0	Mm.215335	NM_025903	ENSMUSG00000010048	Ifrd2	1810034A24Rik|AA470234|AI838527|SKMc15	interferon-related developmental regulator 2	protein-coding	27.5	69.0	67.0	34.5	38.0	34.5
Merged-chr12-112645615-2	chr12	112645115	112646115	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161737, intron 1 of 2)	intron (NM_001161737, intron 1 of 2)	787.0	NM_013929	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-45493363-4	chr5	45492856	45493856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024434)	promoter-TSS (NM_024434)	-18.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-43426249-4	chr11	43425766	43426766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013917)	promoter-TSS (NM_013917)	-18.0	NM_001131054	30939.0	Mm.6856	NM_013917	ENSMUSG00000020415	Pttg1	AW555095|C87862|Pttg|Pttg3	pituitary tumor-transforming gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45554985-4	chr17	45554480	45555480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304956)	promoter-TSS (NM_001304956)	-720.0	NM_008690	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	5.0	24.0	12.5	5.0	45.0	23.5
Merged-chr4-134496745-4	chr4	134496224	134497224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285847)	promoter-TSS (NM_001285847)	-37.0	NM_001285845	71904.0	Mm.142343	NM_027995	ENSMUSG00000037348	Paqr7	2310021M12Rik|AV001994|BB007237|Mpra|PGLP|mPR	progestin and adipoQ receptor family member VII	protein-coding	70.5	123.0	133.0	70.0	104.5	109.5
Merged-chr13-63431285-4	chr13	63430800	63431800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347515, intron 1 of 15)	(CCCCG)n|Simple_repeat|Simple_repeat	445.0	NM_001347515	14088.0	Mm.126106	NM_007985	ENSMUSG00000021461	Fancc	Facc	Fanconi anemia, complementation group C	protein-coding	50.0	134.0	97.5	53.0	115.5	82.0
Merged-chr10-117859107-4	chr10	117858597	117859597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-13123.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155054864-2	chr4	155054364	155055364	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12166.0	NM_001042407	668173.0	Mm.133114	NM_001042407	ENSMUSG00000029047	Pex10	AV128229|Gm142	peroxisomal biogenesis factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-108460323-2	chr4	108459823	108460823	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175472, intron 2 of 30)	CpG-10127	897.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-130715885-5	chr1	130715400	130716400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027859)	promoter-TSS (NR_027859)	-79.0	NR_027859	18640.0	Mm.249861	NM_008825	ENSMUSG00000026409	Pfkfb2	4930568D07Rik	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81265760-2	chr10	81265260	81266260	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_025317, exon 2 of 3)	exon (NM_025317, exon 2 of 3)	1166.0	NM_025317	66047.0	Mm.43397	NM_025317	ENSMUSG00000034932	Mrpl54	0610008M19Rik|D10Sut1e	mitochondrial ribosomal protein L54	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-145935816-2	chr3	145935316	145936316	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-2198.0	NM_001356284	66421.0	Mm.25137	NM_025555	ENSMUSG00000036873	2410004B18Rik	4930572C24Rik	RIKEN cDNA 2410004B18 gene	protein-coding	3.0	0.0	1.5	0.0	0.0	1.5
Merged-chr5-69592184-4	chr5	69591679	69592679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359239, intron 1 of 6)	CpG	125.0	NM_001347363	67980.0	Mm.33830	NM_027681	ENSMUSG00000029209	Gnpda2	4921523I18Rik|4933412A11Rik|BB189630|GNPDA|Gnp2|Sb52|mKIAA4008	glucosamine-6-phosphate deaminase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-187215441-4	chr1	187214950	187215950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028848)	promoter-TSS (NM_028848)	-4.0	NM_029067	74717.0	Mm.250430	NM_028848	ENSMUSG00000026611	Spata17	1700065F16Rik|4930504I07Rik|4930513F16Rik|MSRG-11	spermatogenesis associated 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6294022-2	chr19	6293522	6294522	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	-12435.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47147955-4	chr19	47147457	47148457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3783.0	NM_001081271	546729.0	Mm.439624	NM_001081271	ENSMUSG00000079258	Calhm1	EG546729	calcium homeostasis modulator 1	protein-coding	84.0	117.5	100.0	37.5	102.5	86.0
Merged-chr16-92400206-4	chr16	92399701	92400701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019466)	promoter-TSS (NM_019466)	-123.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-16163874-4	chr4	16163344	16164344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001329751)	promoter-TSS (NM_001329751)	-201.0	NR_138102	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-36216677-4	chr2	36216184	36217184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-13742.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84235498-2	chr15	84234999	84235999	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_133167, intron 1 of 12)	intron (NM_133167, intron 1 of 12)	3456.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62828154-2	chr9	62827654	62828654	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10633.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46761423-4	chr19	46760943	46761943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033569)	promoter-TSS (NM_033569)	-166.0	NM_033569	94219.0	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-143955171-2	chr2	143954671	143955671	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_024281, exon 13 of 24)	exon (NM_024281, exon 13 of 24)	39840.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52891318-4	chr2	52890825	52891825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	MLT1F|LTR|ERVL-MaLR	33457.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44589509-4	chr10	44589008	44590008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130760.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69411809-4	chr11	69411317	69412317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017426, intron 1 of 22)	CpG	1858.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	18.5	36.5	13.5	5.0	17.5	21.5
Merged-chr6-5297511-4	chr6	5297031	5298031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183308, intron 1 of 8)	intron (NM_183308, intron 1 of 8)	842.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	4.5	39.5	31.0	5.0	28.0	12.5
Merged-chr8-8452392-4	chr8	8451882	8452882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	208391.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103258415-4	chr11	103257920	103258920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	8981.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20104642-4	chr10	20104070	20105070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 18 of 29)	intron (NM_008580, intron 18 of 29)	-44350.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-54830446-2	chr1	54829946	54830946	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	95941.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-117482400-2	chr12	117481900	117482900	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34079.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4231818-4	chr19	4231305	4232305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027196)	promoter-TSS (NM_027196)	-88.0	NM_027196	69745.0	Mm.32518	NM_027196	ENSMUSG00000024854	Pold4	2410012M21Rik|AI463381|AW060307|Polds|p12	polymerase (DNA-directed), delta 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74827162-4	chr11	74826650	74827650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3774.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	53.5	86.0	104.0	75.0	194.0	152.5
Merged-chr4-34985-1	chr4	34485	35485	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-3137098.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42502045-4	chr10	42501517	42502517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017472)	promoter-TSS (NM_017472)	-37.0	NM_017472	54198.0	Mm.277870	NM_017472	ENSMUSG00000019804	Snx3	SDP3	sorting nexin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31757838-4	chr16	31757354	31758354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252436, intron 1 of 22)	intron (NM_001252436, intron 1 of 22)	3504.0	NM_001252436	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125148605-6	chr6	125148136	125149136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039669, intron 1 of 9)	intron (NM_001039669, intron 1 of 9)	3412.0	NM_001302779	320678.0	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	70.5	142.5	88.5	52.0	117.0	54.5
Merged-chr2-103008369-4	chr2	103007878	103008878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65135.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	77.5	196.5	98.0	107.5	250.5	133.5
Merged-chr2-45554925-4	chr2	45554419	45555419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-141686.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156180367-4	chr2	156179854	156180854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291114)	promoter-TSS (NM_001291114)	-116.0	NM_133242	170791.0	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding	206.0	323.0	278.5	204.0	450.5	336.0
Merged-chr2-177498219-4	chr2	177497718	177498718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_036450)	promoter-TSS (NR_036450)	-8.0	NR_036450	433520.0	Mm.425117	NM_001024825		Gm14403	-	predicted gene 14403	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80069979-2	chr10	80069479	80070479	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_183426, exon 6 of 32)	exon (NM_183426, exon 6 of 32)	5460.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141228705-4	chr7	141228231	141229231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081118)	promoter-TSS (NM_001081118)	-57.0	NM_001081118	101471.0	Mm.248656	NM_207211	ENSMUSG00000038611	Phrf1	AA673488	PHD and ring finger domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36695851-7	chr5	36695360	36696360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081232, exon 1 of 9)	5' UTR (NM_001081232, exon 1 of 9)	161.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-14801011-4	chr14	14800507	14801507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19808.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	55.5	60.5	61.0	47.0	72.5	55.5
Merged-chr5-92107440-4	chr5	92106878	92107878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	B2_Mm2|SINE|B2	-23634.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	1.5	6.5	11.0	2.5	4.0	3.0
Merged-chr17-35823075-4	chr17	35822567	35823567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008027)	promoter-TSS (NM_008027)	-290.0	NM_008027	14251.0	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	1.5	29.5	12.5	7.0	26.0	15.5
Merged-chr5-129008590-4	chr5	129008088	129009088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007941)	promoter-TSS (NM_007941)	-16.0	NM_007941	13852.0	Mm.260716	NM_007941	ENSMUSG00000029428	Stx2	AW538950|Epim|G1-536-1|Syn-2|repro34	syntaxin 2	protein-coding	22.5	19.5	17.0	19.0	13.0	22.0
Merged-chr19-37550471-4	chr19	37549968	37550968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175353)	promoter-TSS (NM_175353)	50.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	6.5	18.0	13.0	8.5	37.5	18.5
Merged-chr11-75164974-4	chr11	75164470	75165470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001002764)	TTS (NM_001002764)	3182.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49047340-6	chr7	49046830	49047830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	88257.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96338257-4	chr10	96337745	96338745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112038.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50079031-4	chr17	50078545	50079545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 4 of 9)	intron (NM_181397, intron 4 of 9)	111452.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67176967-4	chr15	67176521	67177521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009177)	promoter-TSS (NM_009177)	-139.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	31.0	31.5	25.5	11.5	45.0	22.5
Merged-chr11-94160613-4	chr11	94160135	94161135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50819.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	24.0	19.0	27.5	16.5	31.0	31.0
Merged-chr7-141309363-4	chr7	141308889	141309889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016874, intron 10 of 11)	PB1D10|SINE|Alu	17383.0	NM_007878	13491.0	Mm.41075	NM_007878	ENSMUSG00000025496	Drd4	AW125663|D4R|Drd-4	dopamine receptor D4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5802495-4	chr18	5801996	5802996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	209849.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	83.5	158.0	127.5	43.0	88.0	66.5
Merged-chr14-70971607-3	chr14	70971151	70972151	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302094, intron 6 of 7)	intron (NM_001302094, intron 6 of 7)	81544.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	37.0	38.5	32.0	57.5	59.0	49.5
Merged-chr11-117654141-1	chr11	117653641	117654641	+	1000.0	f0_balb.idr	promoter-TSS (NM_198022)	promoter-TSS (NM_198022)	-148.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34011139-4	chr1	34010637	34011637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133833)	promoter-TSS (NM_133833)	-688.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56716995-4	chr17	56716513	56717513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178926)	promoter-TSS (NM_178926)	-92.0	NM_178926	106639.0	Mm.37290	NM_178926	ENSMUSG00000054723	Vmac	AI662250	vimentin-type intermediate filament associated coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8624195-4	chr11	8623704	8624704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	RLTR20A4|LTR|ERVK	40331.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	6.0	24.5	16.0	6.5	22.5	14.0
Merged-chr4-16159747-4	chr4	16159257	16160257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138102, intron 1 of 11)	intron (NR_138102, intron 1 of 11)	3886.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-75299666-4	chr3	75299175	75300175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-29597.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17723545-1	chr10	17723045	17724045	+	1000.0	f0_c57.idr	intron (NM_010828, intron 1 of 1)	CpG	317.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-12575391-2	chr11	12574891	12575891	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB5_1-I_MM-int|LTR|ERVK	-110431.0	NM_001282993	12808.0	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding	0.0	0.0	1.0	0.0	0.0	1.5
Merged-chr11-69837254-2	chr11	69836754	69837754	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1271.0	NM_026982	69186.0	Mm.248772	NM_026982	ENSMUSG00000070394	Tmem256	1810027O10Rik|3110009M16Rik	transmembrane protein 256	protein-coding	3.5	0.0	0.0	3.5	0.0	0.0
Merged-chr15-98093418-4	chr15	98092918	98093918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_144851, exon 1 of 18)	5' UTR (NM_144851, exon 1 of 18)	151.0	NM_144851	223870.0	Mm.384023	NM_144851	ENSMUSG00000033075	Senp1	2310046A20Rik|D15Ertd528e|E330036L07Rik|suPr-2	SUMO1/sentrin specific peptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43283733-2	chr5	43283233	43284233	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177379, intron 9 of 10)	intron (NM_001177379, intron 9 of 10)	-48379.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-28649599-4	chr12	28649094	28650094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104608)	promoter-TSS (NR_104608)	-8.0	NR_104608	19819.0	Mm.10152	NM_011275	ENSMUSG00000020630	Rnaseh1	-	ribonuclease H1	protein-coding	24.0	73.5	46.0	38.5	69.0	53.5
Merged-chr1-144318513-4	chr1	144318004	144319004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69400.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70746928-4	chr17	70746441	70747441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	Charlie9|DNA|hAT-Charlie	99836.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.0	10.5	4.0	3.5	15.0	8.5
Merged-chr15-88862421-1	chr15	88861921	88862921	+	1000.0	f0_c57.idr	5' UTR (NM_145478, exon 1 of 6)	5' UTR (NM_145478, exon 1 of 6)	227.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60805889-4	chr18	60805413	60806413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042605, intron 1 of 8)	intron (NM_001042605, intron 1 of 8)	2064.0	NM_010545	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	302.5	978.5	543.0	326.0	877.0	606.5
Merged-chr17-31058936-4	chr17	31058443	31059443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 1 of 14)	intron (NM_009593, intron 1 of 14)	1249.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	48.5	88.5	61.5	25.0	108.0	62.5
Merged-chr12-91734814-4	chr12	91734311	91735311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 3 of 6)	intron (NM_175367, intron 3 of 6)	51625.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172490453-4	chr1	172489954	172490954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033608, intron 5 of 20)	intron (NM_033608, intron 5 of 20)	8137.0	NM_033608	93842.0	Mm.214530	NM_033608	ENSMUSG00000037995	Igsf9	644ETD8|Dasm1|Kiaa1355-hp|NRT1|Ncaml|mKIAA1355	immunoglobulin superfamily, member 9	protein-coding	4.5	1.5	5.5	1.0	15.0	8.0
Merged-chr15-58872622-4	chr15	58872150	58873150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026642)	promoter-TSS (NM_026642)	1.0	NM_026642	68260.0	Mm.278805	NM_026642	ENSMUSG00000037085	Trmt12	4632406N01Rik|AI449275|Tyw2	tRNA methyltranferase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125491491-4	chr7	125490975	125491975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026330)	promoter-TSS (NM_026330)	67.0	NM_001360659	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	33.5	110.0	61.5	31.0	54.0	59.5
Merged-chr5-96807419-4	chr5	96806940	96807940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013470, intron 2 of 12)	intron (NM_013470, intron 2 of 12)	14055.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	10.0	27.0	18.0	2.5	36.5	20.5
Merged-chr19-42183762-2	chr19	42183262	42184262	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164531, intron 7 of 11)	intron (NM_001164531, intron 7 of 11)	13195.0	NM_001164531	319740.0	Mm.287359	NM_177319	ENSMUSG00000018820	Zfyve27	2210011N02Rik|9530077C24Rik|AI426636|AI593546|AI835681	zinc finger, FYVE domain containing 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88446512-4	chr6	88446017	88447017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023060)	promoter-TSS (NM_023060)	22.0	NM_023060	65967.0	Mm.333237	NM_023060	ENSMUSG00000033216	Eefsec	Selb|mSelB|sec	eukaryotic elongation factor, selenocysteine-tRNA-specific	protein-coding	2.5	3.0	4.0	4.5	0.0	0.5
Merged-chr3-131976083-4	chr3	131975584	131976584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109208.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	3.0	0.0	7.5	1.5	4.0	2.0
Merged-chr14-118089477-4	chr14	118088979	118089979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37233.0	NM_010024	13190.0	Mm.19987	NM_010024	ENSMUSG00000022129	Dct	DT|TRP-2|TRP2|Tyrp-2|Tyrp2|slaty|slt	dopachrome tautomerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-128592335-4	chr1	128591839	128592839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009911)	promoter-TSS (NM_009911)	-40.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	27.5	119.0	71.0	38.0	106.5	86.5
Merged-chr11-58301925-3	chr11	58301436	58302436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-5133.0	NM_182996	103836.0	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	57.5	184.5	117.5	77.5	142.5	82.0
Merged-chr7-6171596-4	chr7	6171107	6172107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146024)	promoter-TSS (NM_001146024)	-906.0	NM_028316	72667.0	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107038339-4	chr3	107037808	107038808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008418)	TTS (NM_008418)	-1196.0	NR_033498	229694.0	Mm.347584	NM_173787	ENSMUSG00000056145	AI504432	A230102G19	expressed sequence AI504432	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46887510-4	chr8	46887015	46888015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-99372.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34058375-4	chr11	34057873	34058873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 3 of 20)	MTD|LTR|ERVL-MaLR	11445.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-83875274-4	chr3	83874791	83875791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERVK9C_I-int|LTR|ERVK	-33683.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125669938-4	chr8	125669436	125670436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028908, exon 1 of 1)	exon (NM_028908, exon 1 of 1)	118.0	NM_028908	74393.0	Mm.41709	NM_028908	ENSMUSG00000050930	Map10	4933403G14Rik|AI835009|mKIAA1383	microtubule-associated protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-89745005-4	chr10	89744486	89745486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029166)	promoter-TSS (NM_029166)	-5.0	NM_029166	75089.0	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145250342-4	chr6	145249839	145250839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021284)	promoter-TSS (NM_021284)	-108.0	NM_021284	16653.0	Mm.383182	NM_021284	ENSMUSG00000030265	Kras	AI929937|K-Ras|K-Ras 2|K-ras|Ki-ras|Kras-2|Kras2|c-K-ras|c-Ki-ras|p21B|ras	Kirsten rat sarcoma viral oncogene homolog	protein-coding	29.0	33.0	17.0	4.5	12.0	13.0
Merged-chr4-129335444-4	chr4	129334966	129335966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025970)	promoter-TSS (NM_025970)	-96.0	NM_009030	19646.0	Mm.12145	NM_009030	ENSMUSG00000057236	Rbbp4	RBAP48|mRbAp48	retinoblastoma binding protein 4, chromatin remodeling factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113611797-2	chr13	113611297	113612297	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	6767.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-95666367-4	chr1	95665876	95666876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159745, intron 1 of 3)	intron (NM_001159745, intron 1 of 3)	1218.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127632123-4	chr10	127631609	127632609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10877.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-65164355-4	chr6	65163863	65164863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19633.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-22866510-4	chr17	22865996	22866996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177358, intron 1 of 5)	intron (NM_177358, intron 1 of 5)	638.0	NM_177358	240041.0	Mm.328828	NM_177358	ENSMUSG00000059142	Zfp945	A630033E08Rik|C730040L01Rik	zinc finger protein 945	protein-coding	27.0	23.0	14.5	23.5	56.5	20.0
Merged-chr3-101597903-4	chr3	101597395	101598395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	6812.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171051004-4	chr1	171050506	171051506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010188)	TTS (NM_010188)	8388.0	NM_001356511	14131.0	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	15.5	79.5	32.5	6.0	29.0	27.5
Merged-chr16-49930359-4	chr16	49929863	49930863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25467.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134233358-4	chr5	134232876	134233876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3751.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-65593064-4	chr14	65592590	65593590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253812)	promoter-TSS (NM_001253812)	22.0	NM_001253812	74195.0	Mm.29719	NM_028811	ENSMUSG00000022031	Elp3	2610507P14Rik|KAT9	elongator acetyltransferase complex subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-10325739-3	chr10	10325242	10326242	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	146572.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-44920690-4	chr2	44920189	44921189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59067.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138982450-4	chr1	138981946	138982946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	4789.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98867963-4	chr13	98867444	98868444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 7 of 23)	intron (NM_178716, intron 7 of 23)	23098.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	2.0	8.0	14.0	12.0	35.5	15.0
Merged-chr5-96911727-4	chr5	96911238	96912238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9534.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	46.5	106.5	64.5	30.5	45.0	58.0
Merged-chr8-12756953-4	chr8	12756461	12757461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293667)	promoter-TSS (NM_001293667)	-55.0	NM_015804	50770.0	Mm.257837	NM_015804	ENSMUSG00000031441	Atp11a	4930558F19Rik|AU040868|Atpc1h|Ih	ATPase, class VI, type 11A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114380668-7	chr5	114380213	114381213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026145)	promoter-TSS (NM_026145)	93.0	NR_138602	117146.0	Mm.28792	NM_054093	ENSMUSG00000029577	Ube3b	AI449831|AU020130	ubiquitin protein ligase E3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47925530-2	chr17	47925030	47926030	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110824)	promoter-TSS (NM_001110824)	-898.0	NM_001110825	74123.0	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60706454-4	chr10	60705951	60706951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9961.0	NM_023370	22295.0	Mm.440327	NM_023370	ENSMUSG00000012819	Cdh23	4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v	cadherin 23 (otocadherin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51264638-4	chr11	51264150	51265150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358281)	promoter-TSS (NM_001358281)	-988.0	NM_001358281	193286.0	Mm.80975	NM_177567	ENSMUSG00000045942	BC049762	4930503F14	cDNA sequence BC049762	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108098678-4	chr6	108098186	108099186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33641.0	NM_178391	74729.0	Mm.56539	NM_178391	ENSMUSG00000034639	Setmar	5830404F24Rik|Etet2	SET domain without mariner transposase fusion	protein-coding	2.5	0.0	1.5	0.0	2.0	3.0
Merged-chr1-125473401-4	chr1	125472892	125473892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37665.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99641132-4	chr12	99640605	99641605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13131.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107323438-4	chr11	107322961	107323961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	-134080.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-33186540-4	chr15	33186040	33187040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018755, intron 2 of 8)	L1_Mus4|LINE|L1	103411.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119548254-2	chr2	119547761	119548761	+	1000.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_172857)	promoter-TSS (NM_172857)	554.0	NM_019769	56398.0	Mm.214765	NM_019769	ENSMUSG00000014077	Chp1	1500003O03Rik|AA960066|AI046351|Cahp|Chp|Sid470p|p24|vac	calcineurin-like EF hand protein 1	protein-coding	7.0	29.5	24.0	16.5	26.0	46.0
Merged-chr17-34555698-4	chr17	34555191	34556191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8604.0	NM_010929	18132.0	Mm.173813	NM_010929	ENSMUSG00000015468	Notch4	Int-3|Int3|N4	notch 4	protein-coding	3.0	4.0	1.5	0.0	8.5	2.0
Merged-chr2-154285552-4	chr2	154285040	154286040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21704.0	NM_001025574	433492.0	Mm.330682	NM_001025574	ENSMUSG00000067996	Bpifb9b	5430413K10Rik|AI413838	BPI fold containing family B, member 9B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-156202662-4	chr4	156202184	156203184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030671)	promoter-TSS (NR_030671)	-600.0	NR_030671	100382.0	Mm.461024	NR_030671		AW011738	-	expressed sequence AW011738	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83555684-4	chr15	83555188	83556188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001030014)	promoter-TSS (NM_001030014)	23.0	NM_001030014	223722.0	Mm.37560	NM_001030014	ENSMUSG00000048755	Mcat	AI225907|BC025519	malonyl CoA:ACP acyltransferase (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-19838386-3	chr4	19837896	19838896	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028746, intron 2 of 3)	RMER19C|LTR|ERVK	19669.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56748061-4	chr19	56747567	56748567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25695.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36700605-4	chr18	36700114	36701114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21-int|LTR|ERVL	-4689.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	13.0	15.0	16.0	11.5	29.5	30.0
Merged-chr11-120703614-2	chr11	120703114	120704114	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_198223, exon 10 of 15)	exon (NM_198223, exon 10 of 15)	10153.0	NM_016665	20892.0	Mm.259716	NM_016665	ENSMUSG00000025144	Cenpx	Stra13	centromere protein X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89428428-2	chr15	89427928	89428928	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_004843, exon 3 of 27)	non-coding (NR_004843, exon 3 of 27)	1499.0	NR_037154	12651.0	Mm.485045	NM_007692	ENSMUSG00000022617	Chkb	Chetk|Chkl|Ck|Ck/Ek|Ck/Ek-beta|Ckb|Ckekb|Ek	choline kinase beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148487089-4	chr2	148486575	148487575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43540.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145806888-4	chr2	145806366	145807366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	20750.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-20898910-4	chr2	20898388	20899388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128084, intron 3 of 24)	intron (NM_001128084, intron 3 of 24)	68833.0	NM_001081364	71435.0	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38535542-4	chr15	38535052	38536052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16286.0	NM_018745	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43672662-1	chr5	43672162	43673162	+	1000.0	f1_c57bl6.idr	intron (NM_001359906, intron 4 of 37)	intron (NM_001359906, intron 4 of 37)	10283.0	NM_001359903	231214.0	Mm.44434	NM_172274	ENSMUSG00000039765	Cc2d2a	5730509K17Rik|b2b1035Clo	coiled-coil and C2 domain containing 2A	protein-coding	1.0	2.5	6.0	5.0	3.5	17.5
Merged-chr7-140128048-4	chr7	140127562	140128562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153783, intron 3 of 6)	intron (NM_153783, intron 3 of 6)	2377.0	NM_153783	212503.0	Mm.486735	NM_153783	ENSMUSG00000025464	Paox	2410012F02Rik|AI118225|Pao	polyamine oxidase (exo-N4-amino)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51454593-4	chr10	51454108	51455108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-26004.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-116900084-4	chr2	116899607	116900607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040335)	promoter-TSS (NR_040335)	-45.0	NR_040336	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35739794-4	chr17	35739297	35740297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32653.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	56.0	100.5	78.5	34.0	71.5	64.0
Merged-chr4-32248508-4	chr4	32248007	32249007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-168928.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	5.5	65.0	10.0	9.5	35.0	22.5
Merged-chr4-128667345-4	chr4	128666867	128667867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	12665.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127666973-4	chr10	127666469	127667469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045171)	promoter-TSS (NR_045171)	-154.0	NR_045171	72243.0	Mm.482902	NR_045171	ENSMUSG00000040195	1700012D01Rik	-	RIKEN cDNA 1700012D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60648906-2	chr18	60648406	60649406	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14504.0	NR_045401	328963.0	Mm.417203	NR_045401		G630071F17Rik	G630071F17	RIKEN cDNA G630071F17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21295938-4	chr10	21295447	21296447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145209)	promoter-TSS (NM_001145209)	-32.0	NM_001042593	56422.0	Mm.25527	NM_019702	ENSMUSG00000019977	Hbs1l	2810035F15Rik|AI326327|eRFS	Hbs1-like (S. cerevisiae)	protein-coding	13.0	50.5	31.0	27.0	35.0	31.0
Merged-chr10-118810862-3	chr10	118810372	118811372	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58031.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-148679049-2	chr6	148678549	148679549	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1049.0	NR_131024	75831.0	Mm.159595	NR_131024	ENSMUSG00000084909	4930528G23Rik	-	RIKEN cDNA 4930528G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12302450-4	chr13	12301962	12302962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033268, intron 6 of 20)	intron (NM_033268, intron 6 of 20)	38270.0	NM_033268	11472.0	Mm.37638	NM_033268	ENSMUSG00000052374	Actn2	1110008F24Rik	actinin alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-116281138-4	chr12	116280616	116281616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028731)	promoter-TSS (NM_028731)	-106.0	NM_028731	52635.0	Mm.273755	NM_028731	ENSMUSG00000021171	Esyt2	2410017M09Rik|4921504I16Rik|CHR2SYT|D12Ertd551e|Fam62b	extended synaptotagmin-like protein 2	protein-coding	34.5	87.0	55.0	27.0	46.5	63.0
Merged-chr15-78607750-4	chr15	78607264	78608264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028195, intron 5 of 12)	intron (NM_028195, intron 5 of 12)	10717.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	11.0	37.5	53.5	18.5	31.0	31.5
Merged-chr4-129497281-4	chr4	129496787	129497787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6097.0	NM_001085491	68233.0	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99451394-4	chr10	99450877	99451877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157794.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86404252-4	chr6	86403752	86404752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011585)	promoter-TSS (NM_011585)	33.0	NM_001164078	21841.0	Mm.333219	NM_011585	ENSMUSG00000071337	Tia1	2310050N03Rik|AI256674|TIA-1|mTIA-1	cytotoxic granule-associated RNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70374538-4	chr11	70374040	70375040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEf|LINE|L1	-22509.0	NM_009660	11687.0	Mm.4584	NM_009660	ENSMUSG00000018924	Alox15	12-LO|12/15-LO|15-LOX|Alox12l|L-12LO	arachidonate 15-lipoxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-6717348-4	chr10	6716850	6717850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TAAG)n|Simple_repeat|Simple_repeat	-41243.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-7868832-4	chr17	7868336	7869336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57164.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87757203-6	chr11	87756729	87757729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106176)	promoter-TSS (NR_106176)	-274.0	NR_106176	102466883.0		NR_106176	ENSMUSG00000065420	Mir142b	Gm27750|mmu-mir-142b	microRNA 142b	ncRNA	81.0	214.0	171.5	71.0	243.5	125.5
Merged-chr2-145434271-4	chr2	145433765	145434765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053195, intron 2 of 16)	intron (NM_053195, intron 2 of 16)	120717.0	NM_001037929	627302.0	Mm.445953	NM_001037929		Gm14092	-	predicted gene 14092	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-4386967-7	chr10	4386465	4387465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033466, intron 1 of 2)	CpG	510.0	NM_001359811	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81285864-4	chr10	81285369	81286369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282096)	promoter-TSS (NM_001282096)	-88.0	NM_001282096	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83036356-4	chr15	83035838	83036838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2941.0	NM_001271411	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112787191-4	chr13	112786693	112787693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-13584.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80203182-4	chr7	80202692	80203692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	4751.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57228216-4	chr17	57227691	57228691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009778)	promoter-TSS (NM_009778)	-55.0	NM_009778	12266.0	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101451171-4	chr7	101450632	101451632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001143849)	promoter-TSS (NM_001143849)	116.0	NR_152193	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	0.0	0.5	0.0	4.5	4.0	1.0
Merged-chr8-106893623-4	chr8	106893135	106894135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011574)	promoter-TSS (NM_011574)	-5.0	NM_011574	21771.0	Mm.10665	NM_011574	ENSMUSG00000041438	Utp4	Cirh1a|Cirhin|Naic|Teg-292|Tex292	UTP4 small subunit processome component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90476007-4	chr3	90475458	90476458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026374)	promoter-TSS (NM_026374)	-243.0	NM_026374	67781.0	Mm.227258	NM_026374	ENSMUSG00000001016	Ilf2	6230405A16Rik|TEG-267|Tex261|Tex267	interleukin enhancer binding factor 2	protein-coding	14.5	23.5	16.5	2.5	13.0	3.5
Merged-chr17-80237057-4	chr17	80236559	80237559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12608.0	NM_001355458	67242.0	Mm.279985	NM_026053	ENSMUSG00000055760	Gemin6	2610019B15Rik|2810470M17Rik	gem nuclear organelle associated protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21002833-4	chr9	21002316	21003316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023167)	promoter-TSS (NM_023167)	79.0	NM_001357899	66163.0	Mm.427576	NM_023167	ENSMUSG00000003299	Mrpl4	1110017G11Rik	mitochondrial ribosomal protein L4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118401981-4	chr11	118401482	118402482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011150)	promoter-TSS (NM_011150)	-23.0	NM_011150	19039.0	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-142758252-4	chr2	142757732	142758732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 13 of 26)	intron (NM_001355123, intron 13 of 26)	143232.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21642547-2	chr5	21642047	21643047	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199632, intron 1 of 20)	intron (NM_001199632, intron 1 of 20)	3058.0	NM_001199632	320118.0	Mm.442295	NM_177076	ENSMUSG00000048520	Fbxl13	4921539K22Rik	F-box and leucine-rich repeat protein 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99363285-4	chr5	99362779	99363779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-110352.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134099306-4	chr1	134098795	134099795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11947.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120128196-2	chr9	120127696	120128696	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011029, intron 1 of 6)	intron (NM_011029, intron 1 of 6)	430.0	NM_011029	16785.0	Mm.4071	NM_011029	ENSMUSG00000032518	Rpsa	67kDa|67lr|AL022858|Lamr|Lamr1|Lamrl1|MLR|P40|P40-3|P40-8	ribosomal protein SA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103012724-4	chr14	103012234	103013234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 2 of 2)	intron (NR_045657, intron 2 of 2)	21069.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125165184-2	chr6	125164695	125165695	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_001289726, intron 2 of 6)	CpG	578.0	NM_008084	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	121.0	288.0	211.0	127.5	311.0	209.5
Merged-chr5-98033226-4	chr5	98032723	98033723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2261.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-149636738-4	chr5	149636244	149637244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013559)	promoter-TSS (NM_013559)	-408.0	NM_001347534	15505.0	Mm.270681	NM_013559	ENSMUSG00000029657	Hsph1	105kDa|AI790491|Hsp105|Hsp110|hsp-E7I|hsp110/105	heat shock 105kDa/110kDa protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83643551-2	chr11	83643051	83644051	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C2|LTR|ERVK	5827.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29043672-5	chr7	29043202	29044202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009109, intron 84 of 105)	intron (NM_009109, intron 84 of 105)	39992.0	NR_035489	100316710.0		NR_035489	ENSMUSG00000089219	Mir1963	mir-1963|mmu-mir-1963	microRNA 1963	ncRNA	190.0	296.0	233.5	94.5	300.0	195.0
Merged-chr16-91464993-4	chr16	91464480	91465480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_077219)	promoter-TSS (NR_077219)	-124.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	128.0	352.0	181.0	126.5	306.5	216.0
Merged-chr6-134173523-4	chr6	134172995	134173995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	137795.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	7.5	20.0	10.5	14.5	24.5	17.0
Merged-chr8-11465440-4	chr8	11464928	11465928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	B2_Mm2|SINE|B2	-12501.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32395139-2	chr2	32394639	32395639	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133783)	promoter-TSS (NM_133783)	-751.0	NM_133783	96979.0	Mm.28048	NM_133783	ENSMUSG00000026820	Ptges2	0610038H10Rik|C79137|Gbf1|Mpges2|Pges2	prostaglandin E synthase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135187098-4	chr5	135186564	135187564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011714)	promoter-TSS (NM_011714)	-259.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-38061254-4	chr7	38060747	38061747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-41695.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	3.5	3.5	14.0	6.5	12.5	10.5
Merged-chr14-122913099-4	chr14	122912572	122913572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155287)	promoter-TSS (NR_155287)	42.0	NR_155286	105245866.0	Mm.390754	NM_001039531	ENSMUSG00000075463	Gm15735	4930594M22Rik|F930011C10Rik	predicted gene 15735	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130832745-1	chr2	130832245	130833245	+	1000.0	f1_c57bl6.idr	intron (NM_029432, intron 1 of 36)	intron (NM_029432, intron 1 of 36)	6942.0	NM_001311147	228602.0	Mm.271990	NM_028367	ENSMUSG00000027309	4930402H24Rik	2810487F15Rik|AI413763|C78926	RIKEN cDNA 4930402H24 gene	protein-coding	2.5	9.0	4.5	17.0	1.0	3.0
Merged-chr16-85173754-4	chr16	85173263	85174263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198824)	promoter-TSS (NM_001198824)	-56.0	NM_001198826	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	6.5	5.0	3.5	3.5	4.0	2.5
Merged-chr18-73754448-4	chr18	73753970	73754970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053255)	promoter-TSS (NM_053255)	9.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	10.0	13.0	17.0	13.0	20.5	10.5
Merged-chr11-20197318-1	chr11	20196818	20197818	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-4094.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	2.5	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92509125-4	chr5	92508589	92509589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3432.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80133130-4	chr15	80132644	80133644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025609)	promoter-TSS (NM_025609)	-10.0	NM_025609	66513.0	Mm.288245	NM_025609	ENSMUSG00000022414	Tab1	2310012M03Rik|Map3k7ip1|b2b449Clo	TGF-beta activated kinase 1/MAP3K7 binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106216886-4	chr11	106216371	106217371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026009)	promoter-TSS (NM_026009)	-55.0	NM_001361643	72047.0	Mm.41367	NM_028074	ENSMUSG00000020705	Ddx42	1810047H21Rik|AW319508|AW556242|B430002H05Rik|RHELP|RNAHP|SF3b125	DEAD (Asp-Glu-Ala-Asp) box polypeptide 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79161608-4	chr8	79161094	79162094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 8 of 14)	ORR1D2|LTR|ERVL-MaLR	86989.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-105426173-4	chr13	105425667	105426667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-17526.0	NM_008308	15550.0	Mm.4716	NM_008308	ENSMUSG00000021721	Htr1a	Gpcr18	5-hydroxytryptamine (serotonin) receptor 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91024132-4	chr1	91023634	91024634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	25407.0	NM_001111312	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56507333-4	chr17	56506838	56507838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5145.0	NM_011483	20834.0	Mm.76862	NM_011483	ENSMUSG00000044526	Znrf4	1700094M01Rik|Ssrzf1|spzn	zinc and ring finger 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84249717-4	chr8	84249216	84250216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001007571)	promoter-TSS (NM_001007571)	45.0	NM_001007571	101966.0	Mm.200723	NM_001007571	ENSMUSG00000019362	D8Ertd738e	AA589584	DNA segment, Chr 8, ERATO Doi 738, expressed	protein-coding	71.5	157.5	130.0	61.5	156.5	168.5
Merged-chr6-31222636-2	chr6	31222136	31223136	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040260, intron 1 of 5)	B3|SINE|B2	2285.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109476263-2	chr4	109475763	109476763	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013876, exon 1 of 3)	5' UTR (NM_013876, exon 1 of 3)	242.0	NM_013876	29864.0	Mm.392580	NM_013876	ENSMUSG00000028557	Rnf11	-	ring finger protein 11	protein-coding	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46500969-2	chr19	46500469	46501469	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053100)	promoter-TSS (NM_053100)	-679.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-103230904-2	chr9	103230410	103231410	+	1000.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_133977)	promoter-TSS (NM_133977)	-624.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	78.5	72.5	103.5	43.0	63.0	142.0
Merged-chr8-70172391-4	chr8	70171877	70172877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293797)	promoter-TSS (NM_001293797)	-31.0	NM_145597	234371.0	Mm.23488	NM_145597	ENSMUSG00000002342	Tmem161a	AI428876|BB161850|BC021367	transmembrane protein 161A	protein-coding	6.5	57.0	34.5	7.5	35.5	29.5
Merged-chr17-24471208-2	chr17	24470708	24471708	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025954, intron 1 of 1)	CpG	735.0	NM_025954	67078.0	Mm.28541	NM_025954	ENSMUSG00000043445	Pgp	1700012G19Rik|AI481330|AUM|G3PP	phosphoglycolate phosphatase	protein-coding	1.0	0.0	0.0	0.0	1.5	0.0
Merged-chr1-61146278-4	chr1	61145793	61146793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	168379.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	2.0	2.0	3.5	0.0	13.0	14.0
Merged-chr10-25128620-4	chr10	25128105	25129105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	71565.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6276092-4	chr19	6275581	6276581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010119)	promoter-TSS (NM_010119)	-815.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55116141-4	chr11	55115626	55116626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18141.0	NM_010299	14667.0	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113668887-4	chr6	113668401	113669401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172161, intron 3 of 12)	intron (NM_172161, intron 3 of 12)	-28149.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108840278-1	chr3	108839778	108840778	+	1000.0	f0_c57.idr	intron (NM_011504, intron 1 of 18)	CpG	224.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-159557710-4	chr2	159557219	159558219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-389622.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-22302547-4	chr10	22302062	22303062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-4158.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	21.0	81.0	51.5	5.5	38.0	18.5
Merged-chr8-74994034-4	chr8	74993543	74994543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178017, intron 1 of 10)	CpG	393.0	NM_178017	70823.0	Mm.261739	NM_178017	ENSMUSG00000034518	Hmgxb4	4733401K04Rik|AI316803|Hmgb2l1	HMG box domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-16894079-4	chr12	16893576	16894576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009072)	promoter-TSS (NM_009072)	-902.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	166.5	524.0	359.0	203.0	471.0	382.5
Merged-chr11-17158311-2	chr11	17157811	17158811	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024459)	promoter-TSS (NM_024459)	-987.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	1.0	0.5	1.5	0.0	1.0	2.5
Merged-chr1-171503500-4	chr1	171503003	171504003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019484)	promoter-TSS (NM_019484)	25.0	NM_019484	56009.0	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	166.5	348.5	214.0	142.5	266.0	242.5
Merged-chr2-166412636-4	chr2	166412136	166413136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34815.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143629900-3	chr5	143629393	143630393	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011182, intron 1 of 12)	intron (NM_011182, intron 1 of 12)	7446.0	NM_011182	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60479112-2	chr13	60478612	60479612	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122835.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	19.5	8.5	18.0	3.0	1.0	4.0
Merged-chr7-46830164-2	chr7	46829664	46830664	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-15640.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-101767381-4	chr2	101766867	101767867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 3 of 8)	intron (NM_001355625, intron 3 of 8)	30340.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	21.0	45.0	55.5	21.0	36.0	27.0
Merged-chr14-122013807-4	chr14	122013303	122014303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 8 of 8)	intron (NM_026861, intron 8 of 8)	-20871.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	3.5	4.5	9.5	4.5	3.5	4.0
Merged-chr5-16047535-4	chr5	16047017	16048017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110843, intron 3 of 38)	intron (NM_001110843, intron 3 of 38)	112826.0	NM_001110844	12293.0	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-119050493-4	chr10	119049987	119050987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152787)	promoter-TSS (NR_152787)	12.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-5234154-1	chr16	5233654	5234654	+	1000.0	f0_balb.idr	intron (NM_145362, intron 1 of 12)	intron (NM_145362, intron 1 of 12)	533.0	NM_145362	208211.0	Mm.34581	NM_145362	ENSMUSG00000039427	Alg1	HMAT1|HMT1	asparagine-linked glycosylation 1 (beta-1,4-mannosyltransferase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27209892-4	chr3	27209408	27210408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	26904.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81863371-4	chr7	81862851	81863851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291282, intron 2 of 9)	intron (NM_001291282, intron 2 of 9)	664.0	NM_001291282	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	9.5	41.5	18.5	14.0	31.0	16.5
Merged-chr7-138919744-4	chr7	138919246	138920246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10240.0	NM_009760	12176.0	Mm.378890	NM_009760	ENSMUSG00000078566	Bnip3	Nip3	BCL2/adenovirus E1B interacting protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35549274-3	chr8	35548769	35549769	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-38529.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	4.0	0.5	1.0	16.5	16.5	32.0
Merged-chr8-111056796-1	chr8	111056296	111057296	+	1000.0	f1_balb.idr	exon (NM_028274, exon 1 of 1)	exon (NM_028274, exon 1 of 1)	457.0	NM_028274	72544.0	Mm.24174	NM_028274	ENSMUSG00000109941	Exosc6	2610510N21Rik|C76919|Mtr3	exosome component 6	protein-coding	12.0	16.0	12.0	12.0	27.0	27.5
Merged-chr2-68793747-4	chr2	68793256	68794256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67685.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108132715-4	chr3	108132191	108133191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010306, intron 1 of 8)	intron (NM_010306, intron 1 of 8)	13461.0	NM_010306	14679.0	Mm.271703	NM_010306	ENSMUSG00000000001	Gnai3	AI158965|AW537698|Galphai3|Gnai-3	guanine nucleotide binding protein (G protein), alpha inhibiting 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61199765-4	chr10	61199251	61200251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081127, intron 21 of 21)	intron (NM_001081127, intron 21 of 21)	24489.0	NM_023064	65971.0	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81730050-4	chr15	81729565	81730565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146174)	promoter-TSS (NM_001146174)	-146.0	NM_001358622	19387.0	Mm.270975	NM_011241	ENSMUSG00000022391	Rangap1	C79654|Fug1|mKIAA1835	RAN GTPase activating protein 1	protein-coding	1.5	0.0	1.0	0.0	3.0	0.0
Merged-chr7-113609299-2	chr7	113608799	113609799	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44312.0	NR_126544	69295.0	Mm.396150	NR_126544	ENSMUSG00000084984	Far1os	1700006P19Rik	fatty acyl CoA reductase 1, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59306534-2	chr11	59306034	59307034	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139298)	promoter-TSS (NM_139298)	-396.0	NM_139298	216795.0	Mm.218794	NM_139298	ENSMUSG00000000126	Wnt9a	Wnt14	wingless-type MMTV integration site family, member 9A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25634422-3	chr2	25633876	25634876	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6402.0	NM_007995	14133.0	Mm.10510	NM_007995	ENSMUSG00000026938	Fcna	Fcn1	ficolin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114643144-4	chr6	114642648	114643648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028835)	promoter-TSS (NM_028835)	51.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35496106-4	chr2	35495603	35496603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34654.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106683115-4	chr8	106682612	106683612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173037)	promoter-TSS (NM_173037)	44.0	NM_173037	272538.0	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	48.0	114.0	58.0	22.0	68.5	31.0
Merged-chr14-61687026-2	chr14	61686526	61687526	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4653.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167711158-2	chr2	167710658	167711658	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19981.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35984549-2	chr16	35984049	35985049	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008465, intron 1 of 13)	B1_Mus1|SINE|Alu	1186.0	NM_008465	16646.0	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-63243747-4	chr10	63243245	63244245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026101)	promoter-TSS (NM_026101)	-52.0	NM_030114	67345.0	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128379023-4	chr7	128378522	128379522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 4 of 4)	MLT1C|LTR|ERVL-MaLR	39150.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170209378-4	chr2	170208879	170209879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66704.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115119283-4	chr5	115118752	115119752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007383)	promoter-TSS (NM_007383)	94.0	NM_007383	11409.0	Mm.18759	NM_007383	ENSMUSG00000029545	Acads	AI196007|Bcd-1|Bcd1|Hdlq8|SCAD	acyl-Coenzyme A dehydrogenase, short chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-103577363-4	chr8	103576885	103577885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26414.0	NR_045730	71058.0	Mm.67707	NR_045730	ENSMUSG00000110336	4933400L20Rik	-	RIKEN cDNA 4933400L20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12412247-4	chr13	12411765	12412765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144835, intron 17 of 44)	intron (NM_144835, intron 17 of 44)	16890.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70769560-4	chr8	70769053	70770053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008841, intron 13 of 15)	CpG	-2890.0	NM_023065	65972.0	Mm.30241	NM_023065		Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	12.5	11.5	12.0	4.0	35.0	12.0
Merged-chr13-98819300-4	chr13	98818794	98819794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3845.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	18.5	38.5	16.0	27.5	41.0	25.0
Merged-chr3-95135144-4	chr3	95134635	95135635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153121, intron 1 of 2)	intron (NM_153121, intron 1 of 2)	1047.0	NM_153121	217779.0	Mm.341945	NM_153121	ENSMUSG00000053769	Lysmd1	2610022K04Rik|AI415311	LysM, putative peptidoglycan-binding, domain containing 1	protein-coding	8.5	16.5	10.5	14.0	21.0	12.0
Merged-chr3-51249426-2	chr3	51248926	51249926	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009834, intron 2 of 2)	intron (NM_009834, intron 2 of 2)	24979.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35673801-4	chr17	35673278	35674278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010364)	promoter-TSS (NM_010364)	-35.0	NM_010364	14885.0	Mm.10182	NM_010364	ENSMUSG00000001524	Gtf2h4	AW545633|BTF2 p52|p52	general transcription factor II H, polypeptide 4	protein-coding	5.5	11.0	7.5	17.5	24.0	19.0
Merged-chr6-108658579-4	chr6	108658062	108659062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104577, intron 1 of 6)	intron (NR_104577, intron 1 of 6)	-2067.0	NM_011498	20893.0	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	135.0	274.0	195.5	191.0	646.0	347.5
Merged-chr7-29155637-4	chr7	29155127	29156127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146023, intron 3 of 7)	CpG	583.0	NM_001146023	73833.0	Mm.260890	NM_028661	ENSMUSG00000030590	Fam98c	1110006G06Rik|AI836081|AV026483|B230110F21Rik	family with sequence similarity 98, member C	protein-coding	26.5	59.5	51.0	45.0	88.0	57.0
Merged-chr3-59205713-4	chr3	59205226	59206226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	5156.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-3383130-4	chr18	3382616	3383616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029402)	promoter-TSS (NM_029402)	-109.0	NM_029402	71745.0	Mm.291707	NM_029402	ENSMUSG00000024231	Cul2	1300003D18Rik|4932411N15Rik|AI327301|mKIAA4106	cullin 2	protein-coding	21.0	66.5	71.5	19.5	65.0	63.5
Merged-chr17-26507431-4	chr17	26506945	26507945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013642, intron 2 of 3)	intron (NM_013642, intron 2 of 3)	1027.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	35.5	125.0	79.0	49.0	81.5	86.0
Merged-chr3-146813060-4	chr3	146812565	146813565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011100)	promoter-TSS (NM_011100)	-119.0	NM_011100	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-34142967-4	chr12	34142456	34143456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 24 of 27)	intron (NM_001271386, intron 24 of 27)	185285.0	NM_011658	22160.0	Mm.3280	NM_011658	ENSMUSG00000035799	Twist1	M-Twist|Pde|Ska10|Ska<m10Jus>|Twist|bHLHa38|pdt	twist basic helix-loop-helix transcription factor 1	protein-coding	1.5	6.0	4.0	0.0	4.0	8.5
Merged-chr14-121929540-4	chr14	121929047	121930047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 4 of 8)	intron (NM_026861, intron 4 of 8)	-13773.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	212.0	438.5	284.5	142.5	352.5	226.0
Merged-chr1-75219295-4	chr1	75218802	75219802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009447)	promoter-TSS (NM_009447)	-8.0	NM_001313724	22145.0	Mm.1155	NM_009447	ENSMUSG00000026202	Tuba4a	M[a]4|Tuba4	tubulin, alpha 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120763424-4	chr8	120762909	120763909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	24770.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4908921-4	chr18	4908423	4909423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96437.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81960947-4	chr15	81960461	81961461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282040)	promoter-TSS (NM_001282040)	-31.0	NM_001282041	29858.0	Mm.18939	NM_013872	ENSMUSG00000022474	Pmm1	C77612	phosphomannomutase 1	protein-coding	5.0	8.0	4.5	0.0	0.0	1.0
Merged-chr3-103021026-4	chr3	103020528	103021528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310693, intron 1 of 17)	CpG	482.0	NM_144901	229663.0	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76203143-4	chr16	76202674	76203674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80561.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-63921850-2	chr11	63921350	63922350	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_018805, exon 1 of 2)	exon (NM_018805, exon 1 of 2)	434.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	4.0	6.5	8.0	2.0	6.5	1.5
Merged-chr1-134095235-4	chr1	134094722	134095722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16020.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39800383-4	chr18	39799900	39800900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26903.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95701951-4	chr16	95701460	95702460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011809)	promoter-TSS (NM_011809)	-447.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34526913-3	chr19	34526425	34527425	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021460, intron 1 of 9)	intron (NM_021460, intron 1 of 9)	549.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-107597589-4	chr5	107597081	107598081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163461)	promoter-TSS (NM_001163461)	58.0	NM_133248	170823.0	Mm.41417	NM_133248	ENSMUSG00000029276	Glmn	9330160J16Rik|AW227515|Fap48|Fap68	glomulin, FKBP associated protein	protein-coding	3.0	6.0	8.0	2.5	19.5	13.5
Merged-chr6-90477307-3	chr6	90476828	90477828	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001355668, exon 3 of 3)	3' UTR (NM_001355668, exon 3 of 3)	14752.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77800228-2	chr15	77799728	77800728	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 3 of 40)	intron (NM_022410, intron 3 of 40)	41947.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-115251431-4	chr10	115250954	115251954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025706)	promoter-TSS (NM_025706)	39.0	NM_025706	66687.0	Mm.22252	NM_025706	ENSMUSG00000020130	Tbc1d15	4432405K22Rik|AU022358|AU023730|AW557774|Ly6dl|Rab7-GAP	TBC1 domain family, member 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100344487-4	chr11	100343977	100344977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	10070.0	NM_010257	14459.0	Mm.4767	NM_010257	ENSMUSG00000017165	Gast	GAS	gastrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-54724154-8	chr3	54723660	54724660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358017, intron 22 of 24)	intron (NM_001358017, intron 22 of 24)	11204.0	NM_027148	69639.0	Mm.29253	NM_027148	ENSMUSG00000027752	Exosc8	2310032N20Rik|CIP3|mKIAA4013	exosome component 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50212503-2	chr11	50212003	50213003	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1683.0	NM_011018	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76458972-4	chr11	76458526	76459526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 9 of 21)	intron (NM_001346670, intron 9 of 21)	9439.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	32.5	27.5	15.5	18.0	18.0	33.5
Merged-chr1-192753493-4	chr1	192753006	192754006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 2 of 11)	intron (NM_144881, intron 2 of 11)	17713.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	45.0	92.5	82.0	33.5	70.5	39.5
Merged-chr3-88336344-4	chr3	88335863	88336863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178246, exon 1 of 22)	5' UTR (NM_178246, exon 1 of 22)	103.0	NM_178246	229512.0	Mm.439830	NM_173188	ENSMUSG00000001415	Smg5	BC024683|mKIAA1089	Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44676716-4	chr10	44676215	44677215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-217967.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61360378-4	chr14	61359871	61360871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026598)	promoter-TSS (NM_026598)	74.0	NM_026598	68177.0	Mm.22758	NM_026598	ENSMUSG00000021928	Ebpl	5730442K12Rik|EBRP	emopamil binding protein-like	protein-coding	0.5	7.5	3.5	0.5	4.5	5.0
Merged-chr4-3924573-2	chr4	3924073	3925073	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019969, intron 1 of 5)	intron (NM_019969, intron 1 of 5)	13832.0	NM_019969	56711.0	Mm.331467	NM_019969	ENSMUSG00000003282	Plag1	-	pleiomorphic adenoma gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155735760-2	chr4	155735260	155736260	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101506, intron 2 of 3)	intron (NM_001101506, intron 2 of 3)	956.0	NM_001101506	381582.0	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	6.5	14.0	1.5	3.0	9.0	4.5
Merged-chr19-4113906-4	chr19	4113407	4114407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_075078)	TTS (NR_075078)	7668.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74438180-4	chr1	74437681	74438681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001310662, exon 24 of 24)	3' UTR (NM_001310662, exon 24 of 24)	28797.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20787142-4	chr13	20786625	20787625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6988.0	NM_001281854	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	92.0	179.5	103.0	67.5	177.0	101.5
Merged-chr18-4367331-4	chr18	4366828	4367828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040328, intron 2 of 3)	intron (NR_040328, intron 2 of 3)	-8264.0	NM_001361008	67440.0	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45239211-4	chr14	45238720	45239720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027518, intron 1 of 6)	intron (NM_027518, intron 1 of 6)	19503.0	NM_027518	70713.0	Mm.343793	NM_027518	ENSMUSG00000049092	Gpr137c	6330416L11Rik|Gm908|TM7SF1L2	G protein-coupled receptor 137C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25333742-2	chr7	25333242	25334242	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160400, intron 8 of 40)	intron (NM_001160400, intron 8 of 40)	16578.0	NM_001160400	269878.0	Mm.38527	NM_001160400	ENSMUSG00000045039	Megf8	AW049492|Egfl4|b2b1702.2Clo|b2b1702Clo|b2b288Clo|m687Ddg|mKIAA0817	multiple EGF-like-domains 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120492246-2	chr11	120491750	120492750	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013770, intron 1 of 10)	CpG	413.0	NM_013770	27376.0	Mm.3991	NM_013770	ENSMUSG00000025792	Slc25a10	Dic	solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	protein-coding	32.0	123.0	95.5	31.5	128.5	96.0
Merged-chr10-34186831-2	chr10	34186331	34187331	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	20720.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191906678-4	chr1	191906172	191907172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009579)	promoter-TSS (NM_009579)	-109.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-26607362-4	chr19	26606884	26607884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011416, intron 1 of 32)	CpG	2224.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	8.5	21.5	27.5	4.5	49.5	19.0
Merged-chr11-103116172-4	chr11	103115678	103116678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138753)	promoter-TSS (NM_138753)	-147.0	NM_138753	192231.0	Mm.8763	NM_138753	ENSMUSG00000048878	Hexim1	7330426E13Rik|CLP-1|Clp1|HIS1	hexamethylene bis-acetamide inducible 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135872932-2	chr4	135872432	135873432	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026383, exon 2 of 3)	5' UTR (NM_026383, exon 2 of 3)	914.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102998542-4	chr2	102998041	102999041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74972.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	5.0	7.0	5.0	14.5	5.0	1.5
Merged-chr9-62955092-4	chr9	62954595	62955595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 1 of 13)	MTE2b|LTR|ERVL-MaLR	25784.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191194269-4	chr1	191193763	191194763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10930.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29668404-2	chr2	29667904	29668904	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	48684.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73435062-4	chr15	73434576	73435576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11885.0	NM_001358045	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34118147-4	chr18	34117650	34118650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102834.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-44226616-4	chr5	44226085	44227085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173764)	promoter-TSS (NM_173764)	21.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-169958927-4	chr2	169958426	169959426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	4261.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	10.5	24.0	8.0	8.5	13.5	9.5
Merged-chr4-72401404-4	chr4	72400892	72401892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	200148.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84222823-4	chr12	84222341	84223341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3960.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-103364922-4	chr9	103364432	103365432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134427)	promoter-TSS (NM_001134427)	47.0	NM_001134427	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	17.0	37.5	32.5	11.0	30.5	34.5
Merged-chr2-116952913-4	chr2	116952414	116953414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21B|LTR|ERV1	52762.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181319745-4	chr2	181319255	181320255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166665)	promoter-TSS (NM_001166665)	31.0	NM_001001882	269400.0	Mm.11333	NM_001001882	ENSMUSG00000038685	Rtel1	AI451565|AW540478|Rtel	regulator of telomere elongation helicase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-41024022-4	chr12	41023548	41024548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053122)	promoter-TSS (NM_053122)	-42.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25515695-2	chr14	25515195	25516195	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 2 of 23)	intron (NM_183208, intron 2 of 23)	-18744.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0.5	0.0	1.0	0.5	0.0	6.0
Merged-chr10-67043364-4	chr10	67042832	67043832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	38257.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66729110-4	chr15	66728607	66729607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 26 of 47)	intron (NM_009375, intron 26 of 47)	58337.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	19.0	21.0	14.0	16.5	25.0	16.0
Merged-chr3-40523491-4	chr3	40522982	40523982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040445)	promoter-TSS (NR_040445)	-570.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75616488-4	chr15	75615923	75616923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011759)	promoter-TSS (NM_011759)	-261.0	NM_001044718	22701.0	Mm.87210	NM_011759	ENSMUSG00000047003	Zfp41	CTfin92|Zfp-41	zinc finger protein 41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30972103-4	chr16	30971627	30972627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 3 of 3)	intron (NM_198626, intron 3 of 3)	109305.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	9.0	54.0	27.0	2.0	11.0	8.5
Merged-chr10-19063572-4	chr10	19063086	19064086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-48176.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-159232206-4	chr1	159231706	159232706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360878)	promoter-TSS (NM_001360878)	6.0	NM_011931	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	0.0	2.5	3.5	3.0	9.0	0.0
Merged-chr11-116435574-2	chr11	116435082	116436082	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176902, intron 2 of 2)	intron (NM_176902, intron 2 of 2)	1369.0	NR_003376	664849.0	Mm.258466	NR_003376		Gm7367	EG664849	1110014K08Rik pseudogene	pseudo	23.0	41.0	22.0	33.5	32.5	22.5
Merged-chr5-121711063-4	chr5	121710562	121711562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009125)	promoter-TSS (NM_009125)	-547.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	38.5	53.0	36.5	20.5	84.5	48.0
Merged-chr11-115743117-4	chr11	115742613	115743613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22320.0	NM_028014	71947.0	Mm.23168	NM_028014	ENSMUSG00000020747	Tmem94	2310067B10Rik|Kiaa0195|mKIAA0195	transmembrane protein 94	protein-coding	4.5	36.0	38.5	29.0	35.0	13.5
Merged-chr13-112987700-4	chr13	112987219	112988219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081062)	promoter-TSS (NM_001081062)	-83.0	NM_001081062	218630.0	Mm.25457	NM_001081062	ENSMUSG00000042417	Ccno	C86987|Ccnu|E130318K11|UDG2|Ung2	cyclin O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5794177-4	chr19	5793650	5794650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1831.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-79301599-4	chr14	79301112	79302112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025427)	promoter-TSS (NM_025427)	23.0	NM_025427	66214.0	Mm.29811	NM_025427	ENSMUSG00000022018	Rgcc	1190002H23Rik|Rgc-32|Rgc32	regulator of cell cycle	protein-coding	0.0	11.5	1.5	0.0	3.0	3.5
Merged-chr2-130294829-1	chr2	130294329	130295329	+	1000.0	f1_c57bl6.idr	Intergenic	CpG	-1110.0	NM_001110513	228598.0	Mm.32582	NM_152993	ENSMUSG00000053552	Ebf4	Ebf3|O/E-4|Olf-1	early B cell factor 4	protein-coding	2.5	0.0	2.5	2.5	3.0	13.5
Merged-chr7-24441998-4	chr7	24441483	24442483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199013, intron 1 of 2)	intron (NM_199013, intron 1 of 2)	3699.0	NM_199013	210145.0	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	1.5	6.0	7.0	0.0	3.0	2.5
Merged-chr1-65179231-4	chr1	65178736	65179736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010497)	promoter-TSS (NM_010497)	-94.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114697113-3	chr5	114696613	114697613	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-6178.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	0.5	27.5	10.5	22.5	95.0	38.5
Merged-chr11-102297129-4	chr11	102296626	102297626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001098837)	promoter-TSS (NM_001098837)	-497.0	NM_001098837	217218.0	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100872168-4	chr5	100871671	100872671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172715, intron 3 of 12)	intron (NM_172715, intron 3 of 12)	25942.0	NM_172715	231510.0	Mm.271911	NM_172715	ENSMUSG00000029314	Gpat3	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|Agpat9|GPAT-3|mGPAT3	glycerol-3-phosphate acyltransferase 3	protein-coding	2.5	18.0	4.0	0.5	11.5	4.5
Merged-chr6-120174448-6	chr6	120173942	120174942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-19381.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	48.0	79.5	61.0	41.0	96.5	46.5
Merged-chr12-32774889-4	chr12	32774406	32775406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	-45429.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	14.5	15.5	16.5	11.0	20.5	10.0
Merged-chr13-56593393-4	chr13	56592906	56593906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16180.0	NM_009369	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33468568-4	chr2	33468083	33469083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027947)	promoter-TSS (NM_027947)	-51.0	NM_001355612	71834.0	Mm.44186	NM_027947	ENSMUSG00000026788	Zbtb43	1700010E06Rik|Zfp297b|mKIAA0414	zinc finger and BTB domain containing 43	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124712165-4	chr6	124711682	124712682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013536)	promoter-TSS (NM_013536)	-4.0	NM_013536	14791.0	Mm.6390	NM_013536	ENSMUSG00000004268	Emg1	C2f|Grcc2f	EMG1 N1-specific pseudouridine methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12973283-4	chr18	12972762	12973762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008378, intron 1 of 10)	(CTCGG)n|Simple_repeat|Simple_repeat	-1198.0	NM_001357396	16210.0	Mm.8154	NM_008378	ENSMUSG00000024423	Impact	E430016J11Rik	impact, RWD domain protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58509794-4	chr16	58509304	58510304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 1 of 10)	intron (NM_001357433, intron 1 of 10)	13622.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62561451-4	chr4	62560940	62561940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019492, intron 1 of 19)	intron (NM_019492, intron 1 of 19)	1593.0	NM_019492	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100778486-4	chr12	100778001	100779001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361020)	promoter-TSS (NM_001361020)	-556.0	NM_001361023	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	28.5	65.0	45.5	14.5	107.5	49.5
Merged-chr16-22095958-4	chr16	22095474	22096474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	ORR1F|LTR|ERVL-MaLR	67325.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-92008469-4	chr2	92007961	92008961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011957, intron 1 of 11)	CpG	15709.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	16.5	44.0	21.5	19.5	46.5	18.0
Merged-chr6-83115507-4	chr6	83114993	83115993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020619)	promoter-TSS (NM_020619)	-13.0	NM_020619	57377.0	Mm.28188	NM_020619	ENSMUSG00000030036	Mogs	1810017N02Rik|AI181835|Gcs1	mannosyl-oligosaccharide glucosidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27329533-4	chr7	27329052	27330052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113549, intron 3 of 29)	CpG	4096.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106500173-4	chr8	106499679	106500679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10673.0	NM_007665	12560.0	Mm.4658	NM_007665	ENSMUSG00000061048	Cdh3	AI385538|Cadp|Cdhp|P-cadherin|Pcad	cadherin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132353665-4	chr4	132353172	132354172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003270)	promoter-TSS (NR_003270)	14.0	NR_003270	399101.0	Mm.486919	NR_002904	ENSMUSG00000085241	Snhg3	Rnu17d|U17HG	small nucleolar RNA host gene 3	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41019953-4	chr13	41019423	41020423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360770, intron 3 of 4)	intron (NM_001360770, intron 3 of 4)	3673.0	NM_001360770	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	2.5	11.0	8.5	3.5	10.0	10.5
Merged-chr11-100851433-2	chr11	100850933	100851933	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113563)	promoter-TSS (NM_001113563)	-848.0	NM_001113563	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140842087-3	chr5	140841594	140842594	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11663.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	7.5	6.0	3.0	11.0	8.0	8.0
Merged-chr3-137991369-4	chr3	137990876	137991876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9827.0	NM_011932	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43912467-4	chr1	43911956	43912956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21538.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50157936-4	chr17	50157425	50158425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	32572.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37321389-4	chr10	37320889	37321889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-182463.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7039524-4	chr19	7039042	7040042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016737, intron 1 of 13)	CpG	484.0	NM_016737	20867.0	Mm.258633	NM_016737	ENSMUSG00000024966	Stip1	Hop|Sti1|p60	stress-induced phosphoprotein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127837577-4	chr3	127837076	127838076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346718)	promoter-TSS (NM_001346718)	-53.0	NM_145964	211556.0	Mm.403486	NM_145964	ENSMUSG00000074238	Ap1ar	AA407621|C78909|Gadkin	adaptor-related protein complex 1 associated regulatory protein	protein-coding	37.5	109.5	111.0	37.5	106.5	65.0
Merged-chr11-97987771-4	chr11	97987262	97988262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1316.0	NM_001163608	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	53.0	98.5	56.5	39.5	71.0	82.5
Merged-chr12-51831894-1	chr12	51831394	51832394	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-2358.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	0.5	9.0	6.0	10.0	14.5	5.0
Merged-chr16-65739854-3	chr16	65739358	65740358	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75775.0	NM_028572	73569.0	Mm.25670	NM_028572	ENSMUSG00000091243	Vgll3	1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2	vestigial like family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-76370103-4	chr2	76369690	76370690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153405, exon 1 of 10)	exon (NM_153405, exon 1 of 10)	206.0	NM_153405	241490.0	Mm.33310	NM_153405	ENSMUSG00000042369	Rbm45	Drb1|Drbp1|G430095G15Rik	RNA binding motif protein 45	protein-coding	32.0	26.5	27.5	13.5	15.0	12.5
Merged-chr4-9650889-4	chr4	9650386	9651386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	MTB_Mm|LTR|ERVL-MaLR	-7169.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	16.0	76.5	33.0	4.5	44.0	27.0
Merged-chr10-43479546-3	chr10	43479073	43480073	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199028, intron 1 of 3)	CpG	433.0	NM_199028	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-78508893-4	chr8	78508406	78509406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009033)	promoter-TSS (NM_009033)	22.0	NM_001252089	19656.0	Mm.24718	NM_009033	ENSMUSG00000037070	Rbmxl1	Hnrpg|Rbmx|Rbmxrt	RNA binding motif protein, X-linked like-1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-79532554-4	chr14	79532063	79533063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	16889.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127583684-2	chr10	127583184	127584184	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 18 of 88)	intron (NM_008512, intron 18 of 88)	37464.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	11.0	4.0	2.5	2.5	5.0	3.0
Merged-chr1-128707922-4	chr1	128707435	128708435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115636.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	11.0	10.0	15.5	3.0	13.5	22.0
Merged-chr6-118127355-4	chr6	118126863	118127863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362149, intron 2 of 7)	intron (NM_001362149, intron 2 of 7)	11467.0	NM_001362149	78752.0	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-75168657-4	chr1	75168144	75169144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159906)	promoter-TSS (NM_001159906)	-2.0	NM_001159905	68818.0	Mm.32646	NM_026846	ENSMUSG00000026197	Zfand2b	1110060O18Rik|C81256	zinc finger, AN1 type domain 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191086723-4	chr1	191086229	191087229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11685.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	38.5	102.5	52.5	55.5	111.0	62.0
Merged-chr12-3759672-4	chr12	3759184	3760184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027869, intron 16 of 20)	intron (NR_027869, intron 16 of 20)	-47296.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148626428-4	chr4	148625947	148626947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003898, intron 1 of 6)	CpG	549.0	NR_027864	230908.0	Mm.22453	NM_145556	ENSMUSG00000041459	Tardbp	1190002A23Rik|C85084|TDP-43|Tdp43	TAR DNA binding protein	protein-coding	355.0	687.0	508.0	300.0	508.5	405.0
Merged-chr10-93124352-5	chr10	93123799	93124799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36577.0	NM_146239	237459.0	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding	235.0	369.0	381.5	91.0	221.5	155.5
Merged-chr12-59219895-4	chr12	59219404	59220404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033156)	promoter-TSS (NM_001033156)	-421.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	27.0	85.5	41.0	33.5	80.5	40.0
Merged-chr11-69420007-4	chr11	69419500	69420500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081330)	TTS (NM_001081330)	-6325.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-78267677-4	chr16	78267187	78268187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-12233.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88303697-4	chr7	88303192	88304192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009982, intron 5 of 6)	intron (NM_009982, intron 5 of 6)	25607.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	17.0	25.5	12.0	21.0	21.5	26.5
Merged-chr2-6273563-4	chr2	6273061	6274061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 3 of 6)	intron (NR_040333, intron 3 of 6)	-49196.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	22.5	39.0	45.0	13.5	60.0	38.0
Merged-chr18-5134352-4	chr18	5133844	5134844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31387.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4794548-1	chr7	4794048	4795048	+	1000.0	f1_balb.idr	TTS (NM_009081)	TTS (NM_009081)	1583.0	NM_009081	19943.0	Mm.379002	NM_009081	ENSMUSG00000030432	Rpl28	D7Wsu21e	ribosomal protein L28	protein-coding	3.0	7.5	1.0	0.0	0.0	3.0
Merged-chr4-11579595-2	chr4	11579095	11580095	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256142)	promoter-TSS (NM_001256142)	-67.0	NM_001256142	100503583.0	Mm.249437	NM_001256142	ENSMUSG00000094595	Fsbp	-	fibrinogen silencer binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11144119-4	chr16	11143622	11144622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027502, intron 19 of 22)	LSU-rRNA_Hsa|rRNA|rRNA	-9590.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100461872-4	chr15	100461380	100462380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7131.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	53.5	91.0	56.0	20.0	44.0	18.5
Merged-chr2-36234654-4	chr2	36234149	36235149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 2 of 10)	MIRb|SINE|MIR	4223.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-87925614-4	chr7	87925134	87926134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081414, intron 4 of 9)	intron (NM_001081414, intron 4 of 9)	341466.0	NM_001143834	108071.0	Mm.235018	NM_001033224	ENSMUSG00000049583	Grm5	6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b	glutamate receptor, metabotropic 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-97869638-4	chr13	97869135	97870135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	118523.0	NR_152263	111365222.0	Mm.440079	NR_152263		Eyelinc18	-	uncharacterized EyeLinc18	ncRNA	1.0	17.0	6.0	1.0	8.5	6.0
Merged-chr8-36249521-4	chr8	36249018	36250018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081150)	promoter-TSS (NM_001081150)	-2.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	56.5	186.0	84.0	55.5	158.5	77.0
Merged-chr13-5614392-4	chr13	5613884	5614884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	243708.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123216489-2	chr8	123215989	123216989	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177279, intron 2 of 2)	ID4|SINE|ID	3631.0	NM_177279	320869.0	Mm.258354	NM_177279	ENSMUSG00000048478	Spata33	4732415M23Rik|AI847264	spermatogenesis associated 33	protein-coding	4.0	5.0	4.0	1.0	6.5	3.5
Merged-chr10-81137440-4	chr10	81136948	81137948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010731, intron 1 of 2)	CpG	1177.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56740332-4	chr19	56739826	56740826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17954.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127288144-4	chr7	127287634	127288634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8126.0	NM_001253873	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14249938-4	chr2	14249439	14250439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 4 of 29)	(GA)n|Simple_repeat|Simple_repeat	-11064.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-85331726-4	chr9	85331230	85332230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4580.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	30.5	36.5	19.0	8.5	37.5	33.0
Merged-chr13-42051299-2	chr13	42050794	42051794	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_007772)	promoter-TSS (NM_007772)	-727.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19563242-2	chr7	19562742	19563742	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199149)	promoter-TSS (NM_199149)	-844.0	NM_199149	232947.0	Mm.219662	NM_199149	ENSMUSG00000051403	Ppp1r37	Gm158|Lrrc68	protein phosphatase 1, regulatory subunit 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30280912-4	chr7	30280420	30281420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146186)	promoter-TSS (NM_146186)	-499.0	NM_146186	233064.0	Mm.271677	NM_146186	ENSMUSG00000037020	Wdr62	2310038K02Rik|b2b1508Clo	WD repeat domain 62	protein-coding	240.0	578.0	536.0	214.0	506.5	404.5
Merged-chr9-37247623-4	chr9	37247109	37248109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145960, intron 1 of 18)	intron (NM_001145960, intron 1 of 18)	8129.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43313257-4	chr7	43312751	43313751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357811)	promoter-TSS (NM_001357811)	49.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-4727092-4	chr15	4726605	4727605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016704)	promoter-TSS (NM_016704)	-105.0	NM_016704	12274.0	Mm.20247	NM_016704	ENSMUSG00000022181	C6	AW111623	complement component 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34514020-4	chr5	34513505	34514505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139064)	promoter-TSS (NM_139064)	-26.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13674887-4	chr8	13674411	13675411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	2676.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19361942-4	chr7	19361450	19362450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001010836, intron 1 of 12)	intron (NM_001010836, intron 1 of 12)	734.0	NM_001010836	333654.0	Mm.333640	NM_001010836	ENSMUSG00000040734	Ppp1r13l	AV260376|IASPP|Nkip1|wa3	protein phosphatase 1, regulatory (inhibitor) subunit 13 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-34495486-2	chr4	34494992	34495992	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	ID_B1|SINE|B4	-55123.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-89384848-4	chr13	89384334	89385334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44B|LTR|ERVK	-155802.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39118228-4	chr6	39117686	39118686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045813)	promoter-TSS (NR_045813)	163.0	NM_172893	243771.0	Mm.268462	NM_172893	ENSMUSG00000038507	Parp12	9930021O16|AA409132|AA536654|ARTD12|PARP-12|Zc3hdc1	poly (ADP-ribose) polymerase family, member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130906473-4	chr2	130905964	130906964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009730)	promoter-TSS (NM_009730)	-31.0	NM_009730	11990.0	Mm.119936	NM_009730	ENSMUSG00000027312	Atrn	AW558010|Mgca|mg	attractin	protein-coding	10.0	2.5	14.5	3.0	24.0	7.5
Merged-chr16-36633265-4	chr16	36632770	36633770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	32807.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84872200-4	chr8	84871763	84872763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168244)	promoter-TSS (NM_001168244)	5.0	NM_001168244	71846.0	Mm.229128	NM_027954	ENSMUSG00000003824	Syce2	1700013H19Rik|AA407907|Cesc1	synaptonemal complex central element protein 2	protein-coding	14.0	85.5	89.5	35.0	110.5	78.0
Merged-chr8-105758666-4	chr8	105758167	105759167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027469)	promoter-TSS (NM_027469)	-60.0	NM_027469	70575.0	Mm.40954	NM_027469	ENSMUSG00000013150	Gfod2	5730466C23Rik	glucose-fructose oxidoreductase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96374384-4	chr10	96373885	96374885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCa|LINE|L1	148178.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120349040-4	chr11	120348540	120349540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313923)	promoter-TSS (NM_001313923)	362.0	NR_038126	66838.0	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-23135612-4	chr19	23135114	23136114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5612.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	53.5	124.0	105.0	45.5	71.0	44.5
Merged-chr8-126517357-4	chr8	126516861	126517861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42296.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54869400-2	chr11	54868900	54869900	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008248, intron 1 of 2)	ORR1B1|LTR|ERVL-MaLR	3017.0	NM_008248	15254.0	Mm.425	NM_008248	ENSMUSG00000020267	Hint1	AA673479|Hint|Ipk1|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-12033935-4	chr2	12033362	12034362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	256109.0	NM_177268	320816.0	Mm.260201	NM_177268	ENSMUSG00000047909	Ankrd16	2810455F06Rik|AI646698|D430029B21Rik	ankyrin repeat domain 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100839433-4	chr12	100838925	100839925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145448, intron 4 of 12)	intron (NM_145448, intron 4 of 12)	60099.0	NM_001177674	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4653990-4	chr7	4653481	4654481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172894, intron 1 of 23)	intron (NM_172894, intron 1 of 23)	4969.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-14360074-1	chr16	14359574	14360574	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-1484.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	12.0	0.0	3.5	11.5	2.0	0.5
Merged-chr8-126882484-4	chr8	126881996	126882996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	33476.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5797543-4	chr17	5797038	5798038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1119.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158624894-4	chr2	158624393	158625393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175419)	promoter-TSS (NM_175419)	-20.0	NM_175419	109275.0	Mm.27747	NM_175419	ENSMUSG00000037761	Actr5	AA545173|B430109J19Rik	ARP5 actin-related protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77551131-4	chr10	77550625	77551625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 8 of 15)	intron (NM_008404, intron 8 of 15)	20777.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-51533611-4	chr6	51533128	51534128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361581, intron 1 of 6)	intron (NM_001361581, intron 1 of 6)	9368.0	NM_001361580	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	8.0	61.0	26.0	14.0	42.0	32.5
Merged-chr15-103311364-2	chr15	103310866	103311866	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030720)	promoter-TSS (NM_030720)	-928.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127921724-4	chr7	127921213	127922213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360699, intron 5 of 10)	intron (NM_001360699, intron 5 of 10)	8400.0	NM_133351	76560.0	Mm.5875	NM_133351	ENSMUSG00000030800	Prss8	2410039E18Rik|AI313909|C79772|CAP1|fr|mCAP1	protease, serine 8 (prostasin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171840615-4	chr1	171840116	171841116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001252472, exon 2 of 3)	5' UTR (NM_001252472, exon 2 of 3)	919.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	110.0	210.5	135.5	91.5	207.5	131.5
Merged-chr12-12295136-7	chr12	12294656	12295656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	33017.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32540240-4	chr9	32539739	32540739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	1213.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81190880-4	chr15	81190385	81191385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015603)	promoter-TSS (NR_015603)	32.0	NR_015603	67638.0	Mm.390832	NM_026288	ENSMUSG00000047938	4930483J18Rik	-	RIKEN cDNA 4930483J18 gene	ncRNA	15.0	32.0	31.5	10.0	23.0	19.0
Merged-chr11-84870848-4	chr11	84870333	84871333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131197)	promoter-TSS (NR_131197)	-90.0	NR_131197	102635561.0	Mm.341797	NR_131197		Ggnbp2os	-	gametogenetin binding protein 2, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-167306636-4	chr1	167306124	167307124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2046.0	NM_001039483	68944.0	Mm.330045	NM_026881	ENSMUSG00000052428	Tmco1	1190006A08Rik|4930403O06Rik|AA109065|AU022572|ESTM39	transmembrane and coiled-coil domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59538586-4	chr11	59538080	59539080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2989.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85474029-4	chr12	85473517	85474517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010234, exon 1 of 4)	5' UTR (NM_010234, exon 1 of 4)	127.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-60570869-4	chr3	60570332	60571332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	69653.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	10.5	14.0	6.5	4.5	12.5	5.5
Merged-chr4-156216779-4	chr4	156216277	156217277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172417, exon 2 of 4)	5' UTR (NM_172417, exon 2 of 4)	850.0	NM_172417	74183.0	Mm.431343	NM_172417	ENSMUSG00000078486	Perm1	2310042D19Rik	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr5-92344419-1	chr5	92343919	92344919	+	1000.0	f1_balb.idr	intron (NM_001310664, intron 2 of 10)	MLTR11B|LTR|ERVK	4470.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98807017-2	chr7	98806517	98807517	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-28095.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56120122-2	chr17	56119622	56120622	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029796, exon 2 of 2)	exon (NM_029796, exon 2 of 2)	1824.0	NM_029796	76905.0	Mm.348025	NM_029796	ENSMUSG00000037095	Lrg1	1300008B03Rik|2310031E04Rik|Lrg|Lrhg	leucine-rich alpha-2-glycoprotein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167759497-2	chr2	167758997	167759997	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68320.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85060096-4	chr8	85059605	85060605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026791)	promoter-TSS (NM_026791)	-14.0	NM_026791	68628.0	Mm.374815	NM_026791	ENSMUSG00000008167	Fbxw9	1110017H11Rik|Fbw9	F-box and WD-40 domain protein 9	protein-coding	1.0	18.5	9.0	4.5	12.5	14.0
Merged-chr8-70590098-2	chr8	70589607	70590607	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 8 of 11)	B1_Mus2|SINE|Alu	-4374.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	0.0	0.0	1.5	0.0	0.0	0.5
Merged-chr7-122969842-4	chr7	122969325	122970325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011247)	promoter-TSS (NM_011247)	634.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3105532-4	chr11	3105047	3106047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18474.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27429485-4	chr14	27428964	27429964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028945, intron 1 of 23)	CpG	630.0	NM_001114879	218850.0	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	2.0	30.5	6.5	9.5	11.0	16.5
Merged-chr2-162922315-2	chr2	162921815	162922815	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9193.0	NM_026499	67996.0	Mm.24042	NM_026499	ENSMUSG00000016921	Srsf6	1210001E11Rik|AI314910|AW146126|Sfrs6	serine/arginine-rich splicing factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-14586268-4	chr19	14585769	14586769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302951, intron 4 of 19)	intron (NM_001302951, intron 4 of 19)	10944.0	NM_001302951	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70659768-4	chr8	70659183	70660183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023217)	promoter-TSS (NM_023217)	55.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	37.5	75.0	75.5	42.0	85.0	41.0
Merged-chr8-72723279-4	chr8	72722763	72723763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009188)	promoter-TSS (NM_009188)	-7.0	NM_001113248	20467.0	Mm.2137	NM_009188	ENSMUSG00000031622	Sin3b	2810430C10Rik	transcriptional regulator, SIN3B (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46063276-4	chr11	46062752	46063752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291890, intron 2 of 22)	intron (NM_001291890, intron 2 of 22)	7268.0	NM_001291891	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-63048780-2	chr11	63048280	63049280	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-12879.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-38201115-4	chr7	38200628	38201628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17341.0	NM_028166	72244.0	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	0.0	1.0	5.0	5.0	33.0	12.5
Merged-chr2-166481120-4	chr2	166480626	166481626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33675.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-15805586-4	chr1	15805097	15806097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152944)	promoter-TSS (NR_152944)	-49.0	NM_009352	21749.0	Mm.4306	NM_009352	ENSMUSG00000025925	Terf1	Pin2|Trbf1|Trf1	telomeric repeat binding factor 1	protein-coding	74.5	134.5	129.5	63.5	195.5	113.5
Merged-chr10-89383711-2	chr10	89383211	89384211	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60256.0	NM_001284344	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8500058-4	chr12	8499554	8500554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007483)	promoter-TSS (NM_007483)	-45.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	84.0	180.0	140.5	64.5	168.5	166.5
Merged-chr10-93070841-4	chr10	93070349	93071349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347060, intron 1 of 67)	intron (NM_001347060, intron 1 of 67)	10747.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	9.5	25.0	26.0	5.0	24.0	19.0
Merged-chr11-5058094-2	chr11	5057594	5058594	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145216)	promoter-TSS (NM_145216)	-34.0	NM_145216	75668.0	Mm.374836	NM_145216	ENSMUSG00000034209	Rasl10a	2210403B10Rik|AI852688	RAS-like, family 10, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123318597-4	chr8	123318093	123319093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016925)	promoter-TSS (NM_016925)	-17.0	NM_016925	14087.0	Mm.6536	NM_016925	ENSMUSG00000032815	Fanca	AW208693|FACA	Fanconi anemia, complementation group A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144266084-4	chr2	144265568	144266568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_030762)	TTS (NR_030762)	134.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75678767-4	chr15	75678281	75679281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355589)	promoter-TSS (NM_001355589)	19.0	NM_001355589	72960.0	Mm.182401	NM_028404	ENSMUSG00000000934	Top1mt	2900052H09Rik	DNA topoisomerase 1, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36161722-2	chr17	36161222	36162222	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033517, exon 4 of 4)	non-coding (NR_033517, exon 4 of 4)	6815.0	NM_001081032	667977.0	Mm.441651	NM_001081032	ENSMUSG00000073402	Gm8909	EG667977|H2-Tw5l|H2-gs17	predicted gene 8909	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32561902-4	chr4	32561399	32562399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_026843, exon 4 of 5)	non-coding (NR_026843, exon 4 of 5)	9763.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7212251-4	chr10	7211759	7212759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172546)	promoter-TSS (NM_172546)	-22.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	171.0	398.5	308.0	130.0	354.0	224.0
Merged-chr9-113928793-4	chr9	113928293	113929293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-2141.0	NM_001083319	22221.0	Mm.28052	NM_013699	ENSMUSG00000009741	Ubp1	Cp2b|LBP-1a|LBP-1b|NF2d9	upstream binding protein 1	protein-coding	32.0	43.0	36.0	18.5	79.0	38.5
Merged-chr6-39724915-4	chr6	39724452	39725452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139294, intron 1 of 21)	CpG	511.0	NM_139294	109880.0	Mm.245513	NM_139294	ENSMUSG00000002413	Braf	9930012E13Rik|AA120551|AA387315|AA473386|B-raf|Braf-2|Braf2|C230098H17|C87398|D6Ertd631e	Braf transforming gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102368257-4	chr12	102367746	102368746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 5 of 9)	intron (NM_177620, intron 5 of 9)	71567.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-57592858-4	chr8	57592343	57593343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 1 of 11)	B3A|SINE|B2	-58910.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101538285-4	chr7	101537776	101538776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17526.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	91.5	201.5	125.5	71.0	173.5	139.5
Merged-chr4-86672467-4	chr4	86671976	86672976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2417.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	151.0	210.5	160.0	104.5	184.0	144.5
Merged-chr9-20644824-4	chr9	20644327	20645327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286530)	promoter-TSS (NM_001286530)	24.0	NR_153859	66177.0	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103801962-4	chr3	103801448	103802448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133865, exon 4 of 4)	3' UTR (NM_133865, exon 4 of 4)	-1181.0	NR_040412	100503157.0	Mm.445554	NR_040412	ENSMUSG00000084997	Gm15471	-	predicted gene 15471	ncRNA	9.0	5.0	9.5	3.0	11.5	7.5
Merged-chr11-20741838-7	chr11	20741293	20742293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290545)	promoter-TSS (NM_001290545)	-237.0	NM_181411	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	320.5	596.0	498.0	258.0	438.5	390.0
Merged-chr8-4259338-4	chr8	4258851	4259851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183315)	promoter-TSS (NM_183315)	-77.0	NM_183315	330695.0	Mm.34210	NM_183315	ENSMUSG00000048644	Ctxn1	BC028881|Ctxn	cortexin 1	protein-coding	0.0	1.5	1.5	0.0	0.5	1.0
Merged-chr2-34802333-4	chr2	34801875	34802875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2463.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-17977398-2	chr13	17976898	17977898	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	15953.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36570538-2	chr1	36570038	36571038	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-12157.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9914577-4	chr19	9914091	9915091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-15058.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	49.0	85.0	62.5	30.5	83.0	57.5
Merged-chr18-23805871-4	chr18	23805390	23806390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	1920.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	36.0	81.0	36.5	18.0	56.5	39.5
Merged-chr12-84748276-4	chr12	84747771	84748771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	24841.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17934069-1	chr6	17933569	17934569	+	1000.0	f1_c57bl6.idr	intron (NM_022332, intron 14 of 15)	intron (NM_022332, intron 14 of 15)	96376.0	NM_023653	22413.0	Mm.33653	NM_023653	ENSMUSG00000010797	Wnt2	2610510E18Rik|Int1l1|Irp|Mirp|Wnt-2|Wnt2a	wingless-type MMTV integration site family, member 2	protein-coding	1.0	1.0	0.0	2.5	0.0	2.5
Merged-chr11-121204401-4	chr11	121203907	121204907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001333)	promoter-TSS (NM_001001333)	-26.0	NM_001001333	238023.0	Mm.275130	NM_001001333	ENSMUSG00000039307	Hexdc	BC069960	hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing	protein-coding	8.0	21.0	18.5	23.0	16.5	25.0
Merged-chr11-88162252-4	chr11	88161745	88162745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198013, intron 1 of 10)	intron (NM_198013, intron 1 of 10)	-7320.0	NM_001172099	103841.0	Mm.374846	NM_198013	ENSMUSG00000018378	Cuedc1	AI841487|C330016O16Rik	CUE domain containing 1	protein-coding	0.0	1.5	0.0	5.5	3.5	4.0
Merged-chr7-44854699-6	chr7	44854153	44855153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290695, exon 4 of 4)	exon (NM_001290695, exon 4 of 4)	-2493.0	NM_021549	59047.0	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	22.0	64.0	52.0	15.0	43.0	42.0
Merged-chr12-86824187-4	chr12	86823695	86824695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60619.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-6244745-3	chr18	6244240	6245240	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR1b|LTR|Gypsy	-3216.0	NM_008448	16573.0	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6418329-4	chr19	6417829	6418829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205235)	promoter-TSS (NM_001205235)	-409.0	NM_001205235	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70678868-4	chr9	70678373	70679373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007399)	promoter-TSS (NM_007399)	-109.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3135726-2	chr11	3135234	3136234	+	1000.0	f0_balb.idr|f1_balb.idr	exon (NM_030207, exon 26 of 33)	exon (NM_030207, exon 26 of 33)	11713.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34193850-4	chr10	34193328	34194328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	13723.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191224439-4	chr1	191223942	191224942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151547)	promoter-TSS (NR_151547)	-12.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-83525413-4	chr4	83524900	83525900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355378)	promoter-TSS (NM_001355378)	-145.0	NM_001355549	320226.0	Mm.180032	NM_029117	ENSMUSG00000052407	Ccdc171	4930418J05Rik|4930473A06Rik|A330015D16Rik	coiled-coil domain containing 171	protein-coding	10.5	45.5	49.5	30.5	39.0	33.0
Merged-chr18-73541772-4	chr18	73541273	73542273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30932.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104814911-4	chr9	104814414	104815414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028719, intron 2 of 15)	intron (NM_028719, intron 2 of 15)	-238354.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	44.0	72.5	93.5	51.5	89.0	83.0
Merged-chr15-12322582-2	chr15	12322082	12323082	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025673, intron 1 of 3)	intron (NM_025673, intron 1 of 3)	1086.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120635211-4	chr7	120634694	120635694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025899)	promoter-TSS (NM_025899)	5.0	NM_025899	67003.0	Mm.334206	NM_025899	ENSMUSG00000030884	Uqcrc2	1500004O06Rik	ubiquinol cytochrome c reductase core protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-60940136-4	chr19	60939640	60940640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	50391.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	70.0	153.0	84.5	77.0	133.0	90.5
Merged-chr5-112326275-4	chr5	112325765	112326765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018783)	promoter-TSS (NM_018783)	-104.0	NM_018783	54723.0	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	58.5	131.0	92.0	55.0	126.5	107.5
Merged-chr8-117339589-4	chr8	117339061	117340061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-9609.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70443343-4	chr14	70442834	70443834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164082)	promoter-TSS (NM_001164082)	-107.0	NM_001164082	67065.0	Mm.20420	NM_025945	ENSMUSG00000000776	Polr3d	2810426M17Rik|44kDa|AI326118|AW489084|BN51T|RPC4|TSBN51	polymerase (RNA) III (DNA directed) polypeptide D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-69145356-2	chr17	69144856	69145856	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355732, intron 1 of 21)	intron (NM_001355732, intron 1 of 21)	-11388.0	NM_013813	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-62332124-4	chr14	62331677	62332677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026001, intron 1 of 10)	CpG	109.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	10.5	11.0	11.5	6.0	10.5	3.0
Merged-chr15-86212388-4	chr15	86211910	86212910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2049.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-64639763-4	chr14	64639258	64640258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12773.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	18.5	23.0	33.0	28.5	6.0	24.5
Merged-chr5-147896035-4	chr5	147895547	147896547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1232.0	NM_027872	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	45.5	197.0	151.0	40.0	148.5	106.0
Merged-chr7-118484207-4	chr7	118483708	118484708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033380)	TTS (NM_001033380)	7767.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	130.0	297.0	237.5	163.5	348.5	245.0
Merged-chr10-78487862-4	chr10	78487359	78488359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22911.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141265031-4	chr7	141264615	141265615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001252600, exon 4 of 9)	exon (NM_001252600, exon 4 of 9)	1309.0	NM_001252601	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57929572-4	chr15	57929041	57930041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356310, intron 3 of 19)	intron (NM_001356310, intron 3 of 19)	17342.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-20042079-4	chr4	20041573	20042573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010281)	promoter-TSS (NM_010281)	21.0	NM_010281	14590.0	Mm.20461	NM_010281	ENSMUSG00000073987	Ggh	gamma-GH	gamma-glutamyl hydrolase	protein-coding	11.0	23.5	14.5	4.0	10.0	12.0
Merged-chr6-83043541-4	chr6	83043042	83044042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013586, intron 4 of 13)	intron (NM_013586, intron 4 of 13)	-6169.0	NR_106007	102465630.0		NR_106007	ENSMUSG00000099035	Mir7040	Gm27489|mmu-mir-7040	microRNA 7040	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-116975223-4	chr8	116974742	116975742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027103, intron 1 of 2)	intron (NM_027103, intron 1 of 2)	3411.0	NM_001357254	69528.0	Mm.272846	NM_027103	ENSMUSG00000031847	1700030J22Rik	-	RIKEN cDNA 1700030J22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129388368-4	chr6	129387853	129388853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2479.0	NM_001204223	71183.0	Mm.79402	NM_027709	ENSMUSG00000030158	Clec12b	4933425B16Rik	C-type lectin domain family 12, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120121191-4	chr1	120120721	120121721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172074)	promoter-TSS (NM_001172074)	34.0	NM_001172074	73103.0	Mm.271602	NM_028439	ENSMUSG00000026388	3110009E18Rik	-	RIKEN cDNA 3110009E18 gene	protein-coding	86.5	160.5	121.0	100.0	159.5	80.5
Merged-chr2-11548743-4	chr2	11548237	11549237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	5192.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181242041-4	chr2	181241537	181242537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183162)	promoter-TSS (NM_183162)	-10.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55155221-4	chr11	55154724	55155724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3518.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166627716-4	chr2	166627191	166628191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 5 of 39)	intron (NM_177782, intron 5 of 39)	63169.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98792543-4	chr10	98792031	98793031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122111.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98809695-4	chr11	98809188	98810188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138660)	promoter-TSS (NM_138660)	-120.0	NM_138660	192160.0	Mm.40120	NM_138660	ENSMUSG00000078676	Casc3	Btz|Mln51	cancer susceptibility candidate 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101266802-4	chr15	101266276	101267276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010444)	promoter-TSS (NM_010444)	-70.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167805932-7	chr2	167805425	167806425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114748.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36281042-4	chr18	36280537	36281537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008989)	promoter-TSS (NM_008989)	-125.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61556904-4	chr14	61556413	61557413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025697)	promoter-TSS (NM_025697)	-27.0	NM_001310603	66674.0	Mm.282706	NM_025697	ENSMUSG00000021930	Spryd7	6330409N04Rik|Clld6	SPRY domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-183346444-2	chr1	183345944	183346944	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177389, intron 6 of 26)	intron (NM_177389, intron 6 of 26)	23121.0	NM_177389	338366.0	Mm.41152	NM_177389		Mia3	9130229H14Rik|A930039G15Rik|AU022327|B230399H06Rik|C80126|Gm1525|TANGO1|Tango	melanoma inhibitory activity 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-19371967-4	chr2	19371412	19372412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029619, intron 1 of 4)	CpG	276.0	NM_029619	76467.0	Mm.27166	NM_029619	ENSMUSG00000023094	Msrb2	2310050L06Rik|Mrsb|Msrb|Pilb	methionine sulfoxide reductase B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-131557153-2	chr7	131556653	131557653	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145998)	TTS (NM_145998)	3091.0	NM_145998	15372.0	Mm.303357	NM_145998	ENSMUSG00000050100	Hmx2	Nkx-5.2|Nkx5-2	H6 homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-74251844-4	chr4	74251344	74252344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144787)	promoter-TSS (NM_144787)	-35.0	NM_144787	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59160193-4	chr2	59159670	59160670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026361)	promoter-TSS (NM_026361)	513.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9977137-2	chr19	9976637	9977637	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3463.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	14.5	10.5	13.0	8.5	19.5	17.5
Merged-chr2-121355390-4	chr2	121354841	121355841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2435.0	NM_001355069	12716.0	Mm.252145	NM_009897	ENSMUSG00000000308	Ckmt1	Mt-CK|ScCKmit|U-MtCK|UbCKmit|mi-CK|mia-CK	creatine kinase, mitochondrial 1, ubiquitous	protein-coding	0.0	4.0	9.5	13.0	7.5	3.0
Merged-chr10-63122768-4	chr10	63122280	63123280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182992, intron 16 of 19)	intron (NM_182992, intron 16 of 19)	22624.0	NM_016864	53404.0	Mm.228661	NM_016864	ENSMUSG00000036816	Atoh7	Math5|bHLHa13	atonal bHLH transcription factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3860164-2	chr19	3859664	3860664	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271496, intron 1 of 11)	B4A|SINE|B4	8391.0	NR_073190	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92374883-4	chr5	92374378	92375378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-11582.0	NR_038116	56066.0	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	47.5	145.0	104.0	57.5	153.5	101.5
Merged-chr12-83689101-4	chr12	83688607	83689607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008943, intron 1 of 11)	intron (NM_008943, intron 1 of 11)	544.0	NM_008943	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-57027263-3	chr4	57026766	57027766	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355492, intron 19 of 24)	intron (NM_001355492, intron 19 of 24)	-36875.0	NM_001142965	230235.0	Mm.207654	NM_001142965	ENSMUSG00000045589	Frrs1l	6430704M03Rik	ferric-chelate reductase 1 like	protein-coding	1.5	1.0	8.0	11.0	28.5	15.0
Merged-chr5-127616938-2	chr5	127616438	127617438	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133895, exon 1 of 8)	exon (NM_133895, exon 1 of 8)	454.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61640794-4	chr18	61640296	61641296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045420, intron 1 of 2)	L3|LINE|CR1	1143.0	NR_045420	545261.0	Mm.426593	NR_045420	ENSMUSG00000098098	Bvht	Braveheart|Gm20748	braveheart long non-coding RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112130425-4	chr13	112129894	112130894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER30|DNA|hAT-Charlie	-158057.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127254265-4	chr7	127253753	127254753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177362, exon 3 of 3)	exon (NM_177362, exon 3 of 3)	6414.0	NM_023203	66422.0	Mm.29898	NM_023203	ENSMUSG00000042462	Dctpp1	2410015N17Rik|AI854235|RS21-C6	dCTP pyrophosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45371831-4	chr13	45371324	45372324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17918.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	26.5	63.0	54.0	36.0	43.0	71.0
Merged-chr7-28368989-2	chr7	28368489	28369489	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138752, intron 4 of 18)	intron (NM_138752, intron 4 of 18)	3673.0	NM_138752	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143069990-2	chr7	143069490	143070490	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001115085, exon 3 of 3)	exon (NM_001115085, exon 3 of 3)	622.0	NM_001115085	56844.0	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	0.0	0.0	0.0	0.0	0.0	7.0
Merged-chr8-126548020-4	chr8	126547503	126548503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45433.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	3.5	11.0	16.5	11.5	22.0	7.0
Merged-chr18-36793864-4	chr18	36793386	36794386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025594)	promoter-TSS (NM_025594)	-37.0	NM_025594	66492.0	Mm.251155	NM_025594	ENSMUSG00000001383	Zmat2	2610510D14Rik|2900082I05Rik	zinc finger, matrin type 2	protein-coding	11.5	33.0	24.5	11.5	38.0	37.0
Merged-chr11-53931625-2	chr11	53931125	53932125	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39922.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167300313-7	chr2	167299819	167300819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019835, exon 9 of 9)	3' UTR (NM_019835, exon 9 of 9)	48859.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-25281925-4	chr4	25281461	25282461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355512)	promoter-TSS (NM_001355512)	-140.0	NM_001355512	67490.0	Mm.226295	NM_026194	ENSMUSG00000040359	Ufl1	1810074P20Rik|AI429228|Kiaa0776|Maxer|Rcad|mKIAA0776	UFM1 specific ligase 1	protein-coding	8.0	12.5	6.5	0.0	4.5	6.5
Merged-chr5-122401452-2	chr5	122400952	122401952	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019824, intron 2 of 6)	B3|SINE|B2	9574.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160368689-2	chr2	160368189	160369189	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1624.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	19.0	6.0	11.5	0.0	17.5	3.5
Merged-chr15-99392867-4	chr15	99392360	99393360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026669)	promoter-TSS (NM_026669)	-87.0	NM_026669	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	85.0	175.5	167.5	27.5	148.5	85.0
Merged-chr6-86793652-4	chr6	86793193	86794193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013471)	promoter-TSS (NM_013471)	-109.0	NM_013471	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	53.5	98.5	75.0	86.0	90.5	88.5
Merged-chr11-21223754-4	chr11	21223262	21224262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15270.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104233181-4	chr8	104232703	104233703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045642, intron 5 of 8)	intron (NR_045642, intron 5 of 8)	15355.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135706004-4	chr7	135705510	135706510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081117, intron 6 of 13)	intron (NM_001081117, intron 6 of 13)	10369.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119896856-1	chr2	119896356	119897356	+	1000.0	f0_c57.idr	promoter-TSS (NM_001164274)	promoter-TSS (NM_001164274)	-372.0	NM_001164274	29808.0	Mm.87532	NM_013720	ENSMUSG00000033943	Mga	AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5	MAX gene associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40679833-4	chr19	40679325	40680325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	Lx5|LINE|L1	20055.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3427578-5	chr12	3427069	3428069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030694)	promoter-TSS (NR_030694)	712.0	NM_172421	75302.0	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2, transcriptional regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63122645-4	chr14	63122122	63123122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	CpG	160.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77047375-4	chr18	77046859	77047859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027721)	promoter-TSS (NM_027721)	-63.0	NM_027721	71206.0	Mm.35803	NM_027721	ENSMUSG00000025420	Katnal2	3110023G01Rik|4933439B08Rik	katanin p60 subunit A-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97294249-4	chr6	97293768	97294768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 22 of 23)	intron (NM_145148, intron 22 of 23)	-41488.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	10.5	14.0	9.5	0.0	16.5	3.0
Merged-chr1-173741831-4	chr1	173741327	173742327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204910)	promoter-TSS (NM_001204910)	-18.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	181.5	419.0	360.0	222.0	358.0	332.0
Merged-chr10-57795762-2	chr10	57795262	57796262	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020561, intron 1 of 7)	intron (NM_020561, intron 1 of 7)	1218.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40814852-3	chr9	40814335	40815335	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	13562.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	38.5	108.0	60.5	1.5	4.0	2.0
Merged-chr9-3000076-4	chr9	2999574	3000574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	38669.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-5951100-4	chr15	5950615	5951615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93589.0	NR_155428	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71504043-4	chr17	71503538	71504538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023294, intron 13 of 16)	intron (NM_023294, intron 13 of 16)	22819.0	NM_023294	67052.0	Mm.225956	NM_023294	ENSMUSG00000024056	Ndc80	2610020P18Rik|AV139730|HEC|HEC1|Kntc2	NDC80 kinetochore complex component	protein-coding	19.0	99.0	58.0	21.5	62.0	38.0
Merged-chr5-113842002-4	chr5	113841524	113842524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011779)	TTS (NM_011779)	-11523.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	4.5	5.0	1.5	0.0	0.0	2.0
Merged-chr11-58307079-4	chr11	58306568	58307568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182996)	promoter-TSS (NM_182996)	-1.0	NM_182996	103836.0	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	23.0	22.0	23.0	4.5	10.5	3.0
Merged-chr9-64450059-2	chr9	64449559	64450559	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134399, intron 1 of 24)	intron (NM_001134399, intron 1 of 24)	64433.0	NM_001134399	214058.0	Mm.127721	NM_172522	ENSMUSG00000036466	Megf11	2410080H04Rik|D130061K05	multiple EGF-like-domains 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-114673095-2	chr9	114672595	114673595	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15736.0	NM_146229	235661.0	Mm.128627	NM_146229	ENSMUSG00000032435	Dync1li1	1110053F02Rik|Dnclic1|LIC-1	dynein cytoplasmic 1 light intermediate chain 1	protein-coding	0.0	12.0	0.0	0.0	0.0	0.0
Merged-chr4-88872833-2	chr4	88872333	88873333	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7368.0	NM_177348	230405.0	Mm.246593	NM_177348	ENSMUSG00000045364	Ifne	Ifn-tau-1|Ifne1|Ifnt1|Infe1	interferon epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-130646933-4	chr7	130646439	130647439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004468, intron 3 of 21)	intron (NM_001004468, intron 3 of 21)	-45617.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-69535407-1	chr13	69534907	69535907	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-1543.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	111.0	397.5	306.5	205.5	533.5	498.0
Merged-chr13-119327068-4	chr13	119326559	119327559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2F|LTR|ERVL	81952.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88379160-4	chr10	88378701	88379701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004164)	promoter-TSS (NM_001004164)	-211.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80948430-4	chr15	80947908	80948908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009634)	promoter-TSS (NM_009634)	-82.0	NM_009634	11564.0	Mm.38151	NM_009634	ENSMUSG00000022407	Adsl	Adl|Asl	adenylosuccinate lyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-124851236-4	chr4	124850733	124851733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142727)	promoter-TSS (NM_001142727)	474.0	NM_153566	230734.0	Mm.258568	NM_153566	ENSMUSG00000028889	Yrdc	AV303379|BC023823|IRIP|ITIP	yrdC domain containing (E.coli)	protein-coding	32.5	80.5	69.5	28.0	59.5	58.5
Merged-chr2-132686966-4	chr2	132686471	132687471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358260)	promoter-TSS (NM_001358260)	40.0	NM_001358260	73747.0	Mm.284114	NM_028637	ENSMUSG00000044991	1110034G24Rik	-	RIKEN cDNA 1110034G24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-29794715-2	chr10	29794215	29795215	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-258848.0	NM_028351	72780.0	Mm.45191	NM_028351	ENSMUSG00000019880	Rspo3	2810459H04Rik|AW742308|Cristin1|Thsd2	R-spondin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75698249-4	chr2	75697729	75698729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132727, intron 1 of 1)	intron (NR_132727, intron 1 of 1)	6434.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	19.0	28.5	17.5	8.5	27.0	7.0
Merged-chr11-77078481-4	chr11	77077972	77078972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030756)	promoter-TSS (NR_030756)	-35.0	NM_001012309	237859.0	Mm.156195	NM_001012309	ENSMUSG00000037958	Nsrp1	8030451K07|AI851076|AL022898|Ccdc55|NSpr70|NSrp70	nuclear speckle regulatory protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-157458538-4	chr1	157458095	157459095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356419)	promoter-TSS (NM_001356419)	27.0	NM_001356419	226527.0	Mm.215960	NM_001033284	ENSMUSG00000033488	Cryzl2	-	crystallin zeta like 2	protein-coding	3.0	7.0	19.5	18.0	26.5	15.5
Merged-chr5-123277535-3	chr5	123277045	123278045	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49355.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	3.5	5.0	1.0	8.0	40.5	42.0
Merged-chr19-8774558-4	chr19	8774085	8775085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028418)	promoter-TSS (NR_028418)	100.0	NR_015538	100039957.0	Mm.220886	NR_015538		Gm2518	D630022E15Rik	interferon induced transmembrane protein 2 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-137815189-3	chr2	137814695	137815695	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-441389.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90248869-4	chr3	90248359	90249359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013901, intron 1 of 3)	intron (NM_013901, intron 1 of 3)	667.0	NM_013901	30791.0	Mm.294709	NM_013901	ENSMUSG00000052310	Slc39a1	Zip1|Zirtl	solute carrier family 39 (zinc transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132094622-4	chr2	132094148	132095148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355431, intron 2 of 6)	intron (NM_001355431, intron 2 of 6)	50460.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77033157-4	chr10	77032653	77033653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031196)	promoter-TSS (NM_031196)	-59.0	NM_031196	20509.0	Mm.265060	NM_031196	ENSMUSG00000001436	Slc19a1	AI323572|RFC|RFC-1|RFC1	solute carrier family 19 (folate transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77515039-4	chr11	77514542	77515542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026185)	promoter-TSS (NM_026185)	-75.0	NM_026185	67477.0	Mm.432526	NM_026185	ENSMUSG00000000686	Abhd15	1300007F04Rik	abhydrolase domain containing 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78581562-4	chr15	78581036	78582036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155437)	promoter-TSS (NR_155437)	53.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65529484-4	chr3	65528989	65529989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027955)	promoter-TSS (NR_027955)	-75.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	26.0	102.0	60.0	71.5	90.0	65.5
Merged-chr1-156420973-7	chr1	156420449	156421449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346967)	promoter-TSS (NM_001346967)	-34.0	NM_001346967	77352.0	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	10.0	48.0	48.5	10.5	26.0	12.0
Merged-chr4-118180117-4	chr4	118179598	118180598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172382)	promoter-TSS (NM_172382)	-55.0	NM_001161823	230674.0	Mm.234234	NM_172382	ENSMUSG00000033326	Kdm4a	D4Ertd222e|JHDM3A|Jmjd2|Jmjd2a|mKIAA0677	lysine (K)-specific demethylase 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79916977-4	chr10	79916470	79917470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177994)	promoter-TSS (NM_177994)	-1.0	NM_001359010	114229.0	Mm.191035	NM_053244	ENSMUSG00000035773	Kiss1r	Gpr54|KiSS-1|kiSS-1R	KISS1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96374777-4	chr10	96374270	96375270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCa|LINE|L1	148563.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-16884109-4	chr6	16883611	16884611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 1 of 6)	intron (NM_031198, intron 1 of 6)	14330.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14888061-2	chr8	14887561	14888561	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012000)	promoter-TSS (NM_012000)	-475.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99261521-1	chr10	99261021	99262021	+	1000.0	f0_c57.idr	Intergenic	CpG	-1710.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-103313779-4	chr4	103313284	103314284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025909)	promoter-TSS (NM_025909)	-62.0	NM_025909	67013.0	Mm.30021	NM_025909	ENSMUSG00000035069	Oma1	2010001O09Rik|MPRP-1|ZMPOMA1	OMA1 zinc metallopeptidase	protein-coding	38.0	128.0	83.5	46.5	140.5	111.5
Merged-chr3-103872752-4	chr3	103872242	103873242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104070, intron 3 of 22)	intron (NR_104070, intron 3 of 22)	12465.0	NM_008979	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	26.0	43.5	59.0	14.0	26.0	50.0
Merged-chr10-91181792-4	chr10	91181312	91182312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-10193.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-146855841-4	chr2	146855354	146856354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033298)	promoter-TSS (NM_001033298)	-35.0	NM_001033298	228730.0	Mm.292352	NM_001033298	ENSMUSG00000074749	Kiz	Gm114|Ncrna00153|Plk1s1	kizuna centrosomal protein	protein-coding	9.0	7.0	18.5	15.5	57.0	28.0
Merged-chr4-57952528-4	chr4	57952058	57953058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011660, intron 1 of 4)	intron (NM_011660, intron 1 of 4)	3853.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138136612-4	chr1	138136112	138137112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	38514.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30620400-4	chr14	30619896	30620896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	5812.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	9.5	15.5	9.5	14.0	6.0	5.0
Merged-chr19-60818851-4	chr19	60818359	60819359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026437, intron 3 of 8)	intron (NM_026437, intron 3 of 8)	7304.0	NM_001347464	67894.0	Mm.26148	NM_026437	ENSMUSG00000024993	Fam45a	1810055E12Rik	family with sequence similarity 45, member A	protein-coding	109.5	229.5	157.0	85.5	237.5	142.5
Merged-chr1-172643808-4	chr1	172643284	172644284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H2-int|LTR|ERVL-MaLR	-10810.0	NM_026725	68440.0	Mm.33024	NM_026725	ENSMUSG00000026544	Dusp23	1300005N15Rik|LDP-3	dual specificity phosphatase 23	protein-coding	8.5	11.5	14.0	2.5	18.5	6.5
Merged-chr2-117299893-4	chr2	117299386	117300386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 5 of 16)	intron (NM_011246, intron 5 of 16)	42991.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106920815-4	chr11	106920202	106921202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025481)	promoter-TSS (NM_025481)	13.0	NM_025481	66313.0	Mm.340955	NM_025481	ENSMUSG00000018363	Smurf2	2810411E22Rik|AI558114|AI649275	SMAD specific E3 ubiquitin protein ligase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32224539-4	chr19	32224040	32225040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 4 of 9)	intron (NM_144792, intron 4 of 9)	-13527.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94623859-2	chr10	94623359	94624359	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37660.0	NR_106070	102466817.0		NR_106070	ENSMUSG00000098544	Mir7211	Gm27536|mmu-mir-7211	microRNA 7211	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3355590-4	chr5	3355108	3356108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	11715.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127017369-4	chr7	127016858	127017858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030240)	promoter-TSS (NM_030240)	-6.0	NM_030240	67278.0	Mm.345385	NM_030240	ENSMUSG00000107068	Pagr1a	2900092E17Rik|C77040|PA1|PAGR1	PAXIP1 associated glutamate rich protein 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106375617-1	chr1	106375117	106376117	+	1000.0	f0_balb.idr	intron (NM_133821, intron 12 of 16)	Lx7|LINE|L1	171014.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-33083219-4	chr15	33082729	33083729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018755)	promoter-TSS (NM_018755)	100.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119125713-4	chr4	119125224	119126224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011400, intron 2 of 9)	intron (NM_011400, intron 2 of 9)	16979.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	15.5	38.5	54.0	14.5	37.0	18.0
Merged-chr13-3538668-4	chr13	3538112	3539112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008112, intron 1 of 10)	intron (NM_008112, intron 1 of 10)	537.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	20.0	63.5	26.5	24.0	83.5	36.5
Merged-chr7-43669466-7	chr7	43668948	43669948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2583.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139397469-2	chr5	139396969	139397969	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	7565.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11008993-4	chr8	11008477	11009477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081212)	promoter-TSS (NM_001081212)	-547.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119338045-4	chr2	119337596	119338596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-11899.0	NR_030683	100043609.0	Mm.185068	NR_030683	ENSMUSG00000074912	Gm14207	Dll4	predicted gene 14207	ncRNA	14.0	61.5	38.5	10.0	38.5	30.0
Merged-chr17-46711437-4	chr17	46710943	46711943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145488)	promoter-TSS (NM_145488)	-20.0	NM_145488	224824.0	Mm.299399	NM_145488	ENSMUSG00000002763	Pex6	AI132582|D130055I09Rik|mKIAA4177	peroxisomal biogenesis factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-33335457-4	chr5	33334943	33335943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021500)	promoter-TSS (NM_021500)	-129.0	NM_021500	59003.0	Mm.138617	NM_021500	ENSMUSG00000079562	Maea	1110030D19Rik|EMP|Gid9	macrophage erythroblast attacher	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36083599-3	chr17	36083101	36084101	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008199, intron 2 of 5)	CpG-6344	648.0	NM_008199	14963.0	Mm.477808	NM_008199	ENSMUSG00000073406	H2-Bl	H2-B1|H2-Bl-like	histocompatibility 2, blastocyst	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-64654928-2	chr11	64654432	64655432	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCa|LINE|L1	-218258.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	10.0	26.0	46.5	10.0	19.5	15.5
Merged-chr1-162740569-4	chr1	162740075	162741075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081290)	promoter-TSS (NM_001081290)	-19.0	NM_001081290	226562.0	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	116.0	315.0	235.5	143.5	368.0	272.0
Merged-chr5-123884620-4	chr5	123884129	123885129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4609.0	NM_175520	243270.0	Mm.33362	NM_175520	ENSMUSG00000049241	Hcar1	Gpr81	hydrocarboxylic acid receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19316538-4	chr7	19316026	19317026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6481.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-58538493-4	chr12	58537998	58538998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-269240.0	NM_025809	66864.0	Mm.280563	NM_025809	ENSMUSG00000045930	Clec14a	1200003C23Rik|AI642649	C-type lectin domain family 14, member a	protein-coding	0.0	3.5	6.5	0.0	7.0	10.5
Merged-chr4-15265699-4	chr4	15265218	15266218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181401)	promoter-TSS (NM_181401)	-102.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-121008403-4	chr2	121007896	121008896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010761)	promoter-TSS (NM_010761)	-12.0	NM_010761	17151.0	Mm.7838	NM_010761	ENSMUSG00000023572	Ccndbp1	AU022347|DIP1|GCIP|Maid|SECC-8|SSEC-8	cyclin D-type binding-protein 1	protein-coding	12.5	6.5	16.5	15.0	19.5	34.0
Merged-chr6-94962027-2	chr6	94961527	94962527	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18193.0	NR_040761	78773.0	Mm.67065	NR_040761	ENSMUSG00000108187	4930511E03Rik	-	RIKEN cDNA 4930511E03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34472746-4	chr1	34472230	34473230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011206, intron 12 of 14)	intron (NM_011206, intron 12 of 14)	12984.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23423908-4	chr13	23423420	23424420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013924)	promoter-TSS (NM_013924)	-54.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155059674-4	chr1	155059164	155060164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23600.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84907743-4	chr8	84907281	84908281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010062)	promoter-TSS (NM_010062)	-843.0	NM_010062	13423.0	Mm.350831	NM_010062	ENSMUSG00000003812	Dnase2a	Dnase2	deoxyribonuclease II alpha	protein-coding	13.0	30.0	18.5	0.0	24.0	18.0
Merged-chr17-35822404-2	chr17	35821904	35822904	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008027)	promoter-TSS (NM_008027)	691.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	37.5	85.5	74.0	32.0	105.0	64.0
Merged-chr7-135655343-4	chr7	135654836	135655836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316681, intron 3 of 17)	intron (NM_001316681, intron 3 of 17)	-3022.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-51692079-4	chr12	51691577	51692577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_052973)	promoter-TSS (NM_052973)	-163.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-48788525-4	chr7	48788026	48789026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028031)	promoter-TSS (NM_028031)	-477.0	NM_028031	243983.0	Mm.279116	NM_028031	ENSMUSG00000030471	Zdhhc13	2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4	zinc finger, DHHC domain containing 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98776469-4	chr10	98775969	98776969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138173.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-118409296-4	chr4	118408791	118409791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020000)	promoter-TSS (NM_020000)	-28.0	NM_198170	230676.0	Mm.415218	NM_198170	ENSMUSG00000033253	Szt2	6430407N22|TIGR	seizure threshold 2	protein-coding	26.0	28.0	17.0	25.0	38.0	24.5
Merged-chr6-88465375-4	chr6	88464872	88465872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019685)	promoter-TSS (NM_019685)	-37.0	NM_019685	56505.0	Mm.42195	NM_019685	ENSMUSG00000030079	Ruvbl1	2510009G06Rik|Pontin52|Tip49a	RuvB-like protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95279662-4	chr10	95279158	95280158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	44051.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94370962-4	chr11	94370479	94371479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 8 of 30)	intron (NM_029600, intron 8 of 30)	21997.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	10.5	34.0	36.5	13.0	25.5	26.5
Merged-chr9-95572778-4	chr9	95572269	95573269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12952.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13983045-4	chr10	13982546	13983546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	16667.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	47.5	195.0	130.5	24.5	78.0	75.0
Merged-chr7-47008447-4	chr7	47007933	47008933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175318)	promoter-TSS (NM_175318)	-19.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8837666-4	chr4	8837160	8838160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 14 of 36)	intron (NM_001355382, intron 14 of 36)	86336.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40500058-4	chr10	40499561	40500561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70301.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3164650-3	chr11	3164228	3165228	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 8 of 32)	intron (NM_030207, intron 8 of 32)	28735.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87181100-4	chr1	87180595	87181595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2219.0	NM_027084	69453.0	Mm.84618	NM_027084	ENSMUSG00000036480	Prss56	1700027L20Rik	protease, serine 56	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-69656229-4	chr9	69655748	69656748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	104692.0	NM_022378	64290.0	Mm.440890	NM_022378	ENSMUSG00000059246	Foxb1	C43|Fkh5|Foxb1a|Foxb1b|Hfh-e5.1|Mf3|Twh	forkhead box B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17625302-4	chr17	17624769	17625769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172827)	promoter-TSS (NM_172827)	-780.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	183.5	427.0	323.5	169.5	499.5	391.0
Merged-chr14-87141274-4	chr14	87140763	87141763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019670)	promoter-TSS (NM_019670)	-39.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	24.0	13.0	9.0	6.0	19.5	16.0
Merged-chr8-84908672-4	chr8	84908175	84909175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010062)	promoter-TSS (NM_010062)	51.0	NM_010062	13423.0	Mm.350831	NM_010062	ENSMUSG00000003812	Dnase2a	Dnase2	deoxyribonuclease II alpha	protein-coding	19.0	48.5	35.0	27.5	37.5	30.0
Merged-chr18-9708148-1	chr18	9707648	9708648	+	1000.0	f0_balb.idr	intron (NM_130449, intron 1 of 9)	CpG	500.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101686552-4	chr4	101686040	101687040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30867.0	NM_001122899	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	20.5	46.0	27.5	11.0	28.5	29.0
Merged-chr13-9182045-4	chr13	9181554	9182554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88173.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55021319-4	chr13	55020786	55021786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001206390)	promoter-TSS (NM_001206390)	99.0	NM_001206392	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	7.0	22.0	13.5	8.5	31.5	20.0
Merged-chr9-110532362-4	chr9	110531856	110532856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081340)	promoter-TSS (NM_001081340)	-241.0	NM_001081340	235626.0	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152526971-2	chr1	152526471	152527471	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 15 of 17)	intron (NM_016846, intron 15 of 17)	98246.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172241092-4	chr1	172240586	172241586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013734, intron 11 of 22)	intron (NM_013734, intron 11 of 22)	17338.0	NM_013734	27222.0	Mm.482392	NM_013734	ENSMUSG00000007107	Atp1a4	-	ATPase, Na+/K+ transporting, alpha 4 polypeptide	protein-coding	44.5	73.0	37.0	30.0	92.5	58.0
Merged-chr16-52031494-4	chr16	52030923	52031923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033238)	promoter-TSS (NM_001033238)	-126.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92865592-4	chr16	92865099	92866099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39525.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86972052-4	chr17	86971572	86972572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	8961.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	26.0	64.0	53.5	17.5	50.0	36.0
Merged-chr13-37462289-4	chr13	37461771	37462771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116926.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	42.0	92.0	78.0	32.5	78.5	77.0
Merged-chr2-150673976-4	chr2	150673454	150674454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5714.0	NM_080575	68738.0	Mm.7044	NM_080575	ENSMUSG00000027452	Acss1	1110032O15Rik|AI788978|Acas2|Acas2l|AceCS2	acyl-CoA synthetase short-chain family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-14578663-4	chr3	14578181	14579181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007892)	promoter-TSS (NM_007892)	10.0	NM_007892	13559.0	Mm.153415	NM_007892	ENSMUSG00000027552	E2f5	AU024671|E2F-5	E2F transcription factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134347207-2	chr5	134346707	134347707	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	20753.0	NR_039544	100628570.0		NR_039544	ENSMUSG00000093311	Mir3965	mmu-mir-3965|mu-mir-3965	microRNA 3965	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76941996-2	chr12	76941496	76942496	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361663, intron 3 of 4)	B1_Mus1|SINE|Alu	20252.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-122848215-4	chr4	122847688	122848688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008917, intron 4 of 8)	intron (NM_008917, intron 4 of 8)	11961.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10480016-4	chr16	10479498	10480498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302619)	promoter-TSS (NM_001302619)	-74.0	NM_001302619	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106155945-2	chr11	106155445	106156445	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001356459)	TTS (NM_001356459)	3982.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-51008630-4	chr9	51008120	51009120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178710, intron 1 of 15)	CpG	453.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84995713-2	chr15	84995184	84996184	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-7713.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30077615-4	chr2	30077112	30078112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1086.0	NM_153805	263803.0	Mm.233843	NM_153805	ENSMUSG00000026785	Pkn3	AW209115|BC034126	protein kinase N3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71182459-4	chr17	71181973	71182973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1059.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93711744-4	chr16	93711234	93712234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026700)	promoter-TSS (NM_026700)	-173.0	NM_026700	70028.0	Mm.23230	NM_026700	ENSMUSG00000022946	Dopey2	0610038M01Rik|2610510B01Rik|AI503246|C21orf5|mKIAA0933	dopey family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23999607-4	chr16	23999089	24000089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10737.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75057067-4	chr14	75056562	75057562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	41035.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-35224239-4	chr4	35223733	35224733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081343, intron 1 of 10)	MER44B|DNA|TcMar-Tigger	1647.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122611819-4	chr2	122611301	122612301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025961)	promoter-TSS (NM_025961)	-524.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	119.5	287.5	144.0	101.5	287.5	231.5
Merged-chr7-141466676-2	chr7	141466176	141467176	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009842)	promoter-TSS (NM_009842)	-686.0	NM_009842	12476.0	Mm.30246	NM_009842	ENSMUSG00000025510	Cd151	PETA-3|SFA-1|Tspan24	CD151 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140108086-4	chr5	140107577	140108577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359025, intron 14 of 17)	intron (NM_001359025, intron 14 of 17)	66841.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49197020-4	chr13	49196510	49197510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013610)	TTS (NM_013610)	9463.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76372474-2	chr15	76371974	76372974	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_183099, exon 7 of 8)	exon (NM_183099, exon 7 of 8)	2464.0	NM_183099	73542.0	Mm.159026	NM_183099	ENSMUSG00000060794	Tssk5	1700091F14Rik	testis-specific serine kinase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122638766-5	chr6	122638229	122639229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12305.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	143.0	255.5	154.5	15.5	33.0	48.5
Merged-chr11-32585575-2	chr11	32585075	32586075	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 4 of 18)	intron (NM_009288, intron 4 of 18)	52309.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0.5	2.0	3.0	0.0	0.0	2.0
Merged-chr4-140988804-4	chr4	140988329	140989329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164366, intron 1 of 28)	intron (NM_001164366, intron 1 of 28)	1956.0	NM_001164366	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6267833-4	chr11	6267348	6268348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026538)	promoter-TSS (NM_026538)	-119.0	NM_026538	52513.0	Mm.29810	NM_026538	ENSMUSG00000004393	Ddx56	2600001H07Rik|D11Ertd619e|Noh61	DEAD (Asp-Glu-Ala-Asp) box polypeptide 56	protein-coding	43.0	99.0	71.5	58.0	140.0	84.0
Merged-chr1-138159137-4	chr1	138158661	138159661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	15965.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81105062-4	chr15	81104560	81105560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153049)	promoter-TSS (NM_153049)	-13.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	156.5	414.5	302.5	222.0	426.0	307.0
Merged-chr9-47642883-4	chr9	47642391	47643391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	112539.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	91.0	137.0	123.5	69.5	152.5	128.0
Merged-chr3-116615867-4	chr3	116615373	116616373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289568, intron 9 of 17)	ORR1E|LTR|ERVL-MaLR	-1286.0	NM_030016	229780.0	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	2.0	7.5	12.5	2.0	24.5	7.0
Merged-chr11-117831892-2	chr11	117831392	117832392	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027827, intron 2 of 10)	B1_Mur3|SINE|Alu	-5878.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-72086584-2	chr12	72086084	72087084	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205067, intron 1 of 6)	B1_Mus2|SINE|Alu	745.0	NM_024205	104771.0	Mm.258935	NM_024205	ENSMUSG00000005078	Jkamp	1200003C05Rik|2310047L11Rik|Jamp	JNK1/MAPK8-associated membrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77536922-4	chr10	77536409	77537409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 1 of 15)	MTD|LTR|ERVL-MaLR	6561.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-137410655-4	chr7	137410130	137411130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029886, intron 1 of 3)	CpG	126.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115137723-3	chr5	115137241	115138241	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-2766.0	NM_175352	106840.0	Mm.29241	NM_175352	ENSMUSG00000046562	Unc119b	AA407659|AI414892	unc-119 lipid binding chaperone B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121459270-4	chr10	121458784	121459784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	16966.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	66.5	187.5	145.0	89.5	235.5	161.0
Merged-chr3-116189554-4	chr3	116189034	116190034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59846.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-80758597-4	chr1	80758133	80759133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175291)	promoter-TSS (NM_175291)	-80.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-24708615-4	chr12	24708088	24709088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009104, exon 2 of 10)	exon (NM_009104, exon 2 of 10)	334.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	0.0	5.0	6.5	6.0	14.5	6.5
Merged-chr1-36309787-4	chr1	36309322	36310322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290727, intron 1 of 5)	intron (NM_001290727, intron 1 of 5)	2089.0	NM_001172205	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19939419-4	chr10	19938918	19939918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	4892.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	25.5	69.5	23.0	22.5	67.0	42.0
Merged-chr1-88008399-4	chr1	88007908	88008908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033291, intron 1 of 27)	CpG	143.0	NM_001198573	227334.0	Mm.80484	NM_001033291	ENSMUSG00000005501	Usp40	B230215L03Rik|C730029K03	ubiquitin specific peptidase 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119981147-1	chr4	119980647	119981647	+	1000.0	f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	166469.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	8.0	2.0	0.0	1.0	1.5	0.0
Merged-chr13-100015679-4	chr13	100015157	100016157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030026)	promoter-TSS (NM_030026)	-18.0	NM_030026	78038.0	Mm.137327	NM_030026	ENSMUSG00000021646	Mccc2	4930552N12Rik|MCCB	methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6241530-4	chr19	6240990	6241990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194348)	promoter-TSS (NM_194348)	-178.0	NM_194348	329015.0	Mm.277384	NM_194348	ENSMUSG00000024773	Atg2a	1810013C15Rik|A830054M12|BC023754|mKIAA0404	autophagy related 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34389727-4	chr7	34389244	34390244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360654)	promoter-TSS (NM_001360654)	-39.0	NM_025948	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54686811-4	chr14	54686291	54687291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_023190, exon 1 of 19)	5' UTR (NM_023190, exon 1 of 19)	140.0	NM_001085473	56215.0	Mm.297078	NM_019567	ENSMUSG00000022185	Acin1	2610036I19Rik|2610510L13Rik|Acinus|Acn|C79325|acinusL|acinusS|mKIAA0670	apoptotic chromatin condensation inducer 1	protein-coding	4.0	14.5	6.0	9.0	30.5	5.5
Merged-chr17-73942403-4	chr17	73941916	73942916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 2 of 35)	intron (NM_011723, intron 2 of 35)	7780.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-72110707-2	chr9	72110207	72111207	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253865, intron 2 of 14)	intron (NM_001253865, intron 2 of 14)	494.0	NM_001253862	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154904672-4	chr4	154904176	154905176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR16|LTR|ERVK	-5633.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80100067-4	chr17	80099565	80100565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27406.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128439073-4	chr2	128438572	128439572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9721.0	NR_028590	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	19.0	21.5	23.5	22.0	18.5	23.0
Merged-chr17-65884975-4	chr17	65884473	65885473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198949)	promoter-TSS (NM_001198949)	-50.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	53.0	101.5	76.5	33.0	102.0	96.0
Merged-chr8-119423964-4	chr8	119423461	119424461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13201.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30712155-4	chr2	30711649	30712649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9061.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108347803-4	chr9	108347313	108348313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311157)	promoter-TSS (NM_001311157)	-18.0	NM_001311157	22258.0	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88490462-4	chr15	88489956	88490956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109846.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101468087-4	chr11	101467590	101468590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009708)	promoter-TSS (NM_009708)	-85.0	NM_009708	11858.0	Mm.378883	NM_009708	ENSMUSG00000001313	Rnd2	Arhn|Rohn|rho7	Rho family GTPase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-17839751-4	chr5	17839240	17840240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	-3844.0	NM_007643	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75062317-4	chr15	75061801	75062801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13464.0	NM_001252056	17067.0	Mm.1583	NM_010741	ENSMUSG00000079018	Ly6c1	AA682074|AA959465|Ly-6C|Ly-6C1|Ly6c	lymphocyte antigen 6 complex, locus C1	protein-coding	4.5	0.0	2.5	3.5	4.0	2.0
Merged-chr4-41464645-2	chr4	41464145	41465145	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025539)	promoter-TSS (NM_025539)	203.0	NM_024241	109242.0	Mm.370288	NM_024241	ENSMUSG00000028438	Kif24	4933425J19Rik|9430029L23Rik	kinesin family member 24	protein-coding	0.5	0.0	0.0	0.5	0.0	0.0
Merged-chr1-181234506-4	chr1	181233988	181234988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22510.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150606007-4	chr4	150605519	150606519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	46155.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	18.0	25.5	16.0	2.5	25.0	18.5
Merged-chr15-82127836-4	chr15	82127343	82128343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172428)	promoter-TSS (NM_172428)	-79.0	NM_172428	76457.0	Mm.440373	NM_172428	ENSMUSG00000068114	Ccdc134	2310042L06Rik|AW208859	coiled-coil domain containing 134	protein-coding	127.0	362.0	233.0	104.0	207.5	218.0
Merged-chr7-100591100-4	chr7	100590595	100591595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003559, intron 1 of 7)	intron (NR_003559, intron 1 of 7)	319.0	NR_153425	52443.0	Mm.473730	NM_198831	ENSMUSG00000030706	Mrpl48	1810030E20Rik|2610028L11Rik|CGI-118|D4Ertd786e|L48mt|MRP-L48	mitochondrial ribosomal protein L48	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49905497-7	chr16	49905011	49906011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 8 of 9)	intron (NM_010581, intron 8 of 9)	49857.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-39642758-4	chr8	39642265	39643265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031195)	promoter-TSS (NM_031195)	-87.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59866896-4	chr15	59866387	59867387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71928.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.0	3.0	1.0	1.0	2.0	0.0
Merged-chr13-85189393-4	chr13	85188882	85189882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347588)	promoter-TSS (NM_001347588)	-3.0	NM_001347587	66671.0	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	25.0	19.5	19.0	19.5	40.0	16.5
Merged-chr4-126468711-4	chr4	126468196	126469196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317173)	promoter-TSS (NM_001317173)	-113.0	NM_153403	236511.0	Mm.30800	NM_153403	ENSMUSG00000041530	Ago1	Eif2c1	argonaute RISC catalytic subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-86746145-4	chr8	86745653	86746653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009172)	promoter-TSS (NM_009172)	-147.0	NM_009172	20437.0	Mm.324553	NM_009172	ENSMUSG00000036840	Siah1a	AA982064|AI853500|Sinh1a	siah E3 ubiquitin protein ligase 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-14186798-4	chr10	14186315	14187315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	220436.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5878330-4	chr11	5877829	5878829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361942)	promoter-TSS (NM_001361942)	-73.0	NM_008894	18972.0	Mm.35788	NM_008894	ENSMUSG00000020471	Pold2	50kDa|p50|po1D2	polymerase (DNA directed), delta 2, regulatory subunit	protein-coding	5.5	16.5	14.0	5.0	16.0	11.0
Merged-chr14-102978841-5	chr14	102978370	102979370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177715, exon 1 of 1)	3' UTR (NM_177715, exon 1 of 1)	3762.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-103588928-4	chr8	103588421	103589421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14878.0	NR_045730	71058.0	Mm.67707	NR_045730	ENSMUSG00000110336	4933400L20Rik	-	RIKEN cDNA 4933400L20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-112928945-4	chr10	112928436	112929436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033474)	promoter-TSS (NM_001033474)	90.0	NM_001033474	382423.0	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132	ataxin 7-like 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102429305-6	chr11	102428820	102429820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	-1002.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5615068-4	chr13	5614574	5615574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	243018.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-67869362-4	chr14	67868873	67869873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177780, intron 2 of 51)	intron (NM_177780, intron 2 of 51)	-9628.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	36.0	52.5	46.5	44.0	96.5	85.0
Merged-chr5-99251009-4	chr5	99250499	99251499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	1928.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124052302-4	chr5	124051795	124052795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20035.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	44.5	112.5	78.0	53.0	127.5	85.0
Merged-chr15-77842289-4	chr15	77841789	77842789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022410)	promoter-TSS (NM_022410)	-114.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-38480252-4	chr5	38479730	38480730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102414)	promoter-TSS (NM_001102414)	76.0	NM_001102414	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35828639-2	chr17	35828139	35829139	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008027, intron 8 of 12)	B1_Mus1|SINE|Alu	5282.0	NM_008027	14251.0	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	1.5	2.0	0.0	1.5	2.0	0.0
Merged-chr11-95259810-2	chr11	95259310	95260310	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1719.0	NM_053093	93670.0	Mm.40085	NM_053093	ENSMUSG00000020872	Tac4	AW489379|PPT-C	tachykinin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr16-33380817-4	chr16	33380364	33381364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011749)	promoter-TSS (NM_011749)	89.0	NM_011749	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66070067-4	chr5	66069583	66070583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	28096.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	8.5	4.0	9.0	5.5	12.5	7.0
Merged-chr16-3872371-4	chr16	3871867	3872867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033159)	promoter-TSS (NM_001033159)	7.0	NM_001033159	71063.0	Mm.379190	NM_001033159	ENSMUSG00000039789	Zfp597	4933407K12Rik|AI462383|AI666357	zinc finger protein 597	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-28533308-4	chr2	28532798	28533798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145835)	promoter-TSS (NM_001145835)	-166.0	NM_001145835	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-71162708-4	chr9	71162218	71163218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271843)	promoter-TSS (NM_001271843)	-85.0	NM_001271843	64008.0	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-69687592-4	chr1	69687097	69688097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CCGCG)n|Simple_repeat|Simple_repeat	-1637.0	NM_011770	22779.0	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97749062-4	chr7	97748549	97749549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-10802.0	NM_175105	66333.0	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-58470220-4	chr3	58469745	58470745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55525.0	NM_001347233	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37550898-2	chr19	37550398	37551398	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175353, intron 1 of 21)	CpG	480.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	12.0	57.0	35.5	14.0	63.0	38.5
Merged-chr14-61518837-4	chr14	61518337	61519337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1B|DNA|hAT-Tip100	26149.0	NR_045714	75349.0	Mm.233613	NR_045714	ENSMUSG00000115656	4930556J02Rik	-	RIKEN cDNA 4930556J02 gene	ncRNA	0.5	0.0	0.5	0.5	1.0	0.5
Merged-chr5-110970492-5	chr5	110970003	110971003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 2 of 22)	B1F|SINE|Alu	-33641.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126147375-4	chr7	126146873	126147873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 8 of 23)	PB1D10|SINE|Alu	53128.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81298873-4	chr10	81298391	81299391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	L1MB7|LINE|L1	5928.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70656229-4	chr9	70655729	70656729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172772, intron 1 of 8)	intron (NM_172772, intron 1 of 8)	945.0	NM_172772	235461.0	Mm.170855	NM_172772	ENSMUSG00000042444	Mindy2	AI465301|B230380D07Rik|Fam63b|mKIAA1164	MINDY lysine 48 deubiquitinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47432605-4	chr19	47432104	47433104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	31807.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	32.5	83.0	72.5	38.0	69.0	61.0
Merged-chr13-100681835-4	chr13	100681337	100682337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183115, exon 4 of 12)	exon (NM_183115, exon 4 of 12)	12356.0	NM_001168386	76041.0	Mm.23977	NM_183115	ENSMUSG00000048924	Ccdc125	5830436D01Rik|AL023012	coiled-coil domain containing 125	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80569906-4	chr10	80569411	80570411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_078477, intron 1 of 1)	intron (NM_078477, intron 1 of 1)	7385.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11965890-2	chr4	11965390	11966390	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040577)	promoter-TSS (NR_040577)	91.0	NM_001290387	381511.0	Mm.331489	NM_001033453	ENSMUSG00000049225	Pdp1	Gm1024|Ppm2c	pyruvate dehyrogenase phosphatase catalytic subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34410945-2	chr18	34410444	34411444	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_016927, intron 2 of 14)	B3|SINE|B2	1521.0	NM_016927	53871.0	Mm.445792	NM_016927	ENSMUSG00000014503	Pkd2l2	TRPP5	polycystic kidney disease 2-like 2	protein-coding	1.5	2.0	0.5	3.0	27.5	15.0
Merged-chr10-91138475-4	chr10	91137980	91138980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-14517.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-106769110-4	chr6	106768623	106769623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027296)	promoter-TSS (NM_027296)	-15.0	NM_001242358	70047.0	Mm.196332	NM_027296	ENSMUSG00000013736	Trnt1	2410043H24Rik|2610044E04Rik|9830143O18Rik|AA408384|C76540|CGI-47|mt-Trat	tRNA nucleotidyl transferase, CCA-adding, 1	protein-coding	12.0	9.5	15.0	18.5	21.5	6.0
Merged-chr9-25482005-3	chr9	25481511	25482511	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 1 of 7)	intron (NM_026189, intron 1 of 7)	414.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58747005-2	chr1	58746505	58747505	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 7 of 8)	intron (NM_001355056, intron 7 of 8)	16453.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77946957-4	chr18	77946463	77947463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195633, intron 1 of 43)	MTE-int|LTR|ERVL-MaLR	8496.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24624607-4	chr16	24624133	24625133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	95319.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44119922-4	chr16	44119421	44120421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	19338.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85341340-4	chr12	85340834	85341834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026775, exon 5 of 5)	3' UTR (NM_026775, exon 5 of 5)	-1972.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24352783-3	chr17	24352275	24353275	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039581, intron 1 of 31)	intron (NM_001039581, intron 1 of 31)	752.0	NM_001039581	27410.0	Mm.239470	NM_013855	ENSMUSG00000024130	Abca3	1810036E22Rik|ABC-C|Abc3	ATP-binding cassette, sub-family A (ABC1), member 3	protein-coding	28.0	64.5	53.0	57.0	125.5	111.0
Merged-chr1-184618235-4	chr1	184617735	184618735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60544.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	4.0	32.5	9.0	4.0	22.5	10.5
Merged-chr8-125756765-4	chr8	125756255	125757255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175561, intron 32 of 33)	intron (NM_175561, intron 32 of 33)	22552.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-55547324-4	chr15	55546830	55547830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026759, intron 3 of 6)	B3|SINE|B2	9982.0	NM_026759	68537.0	Mm.236795	NM_026759	ENSMUSG00000022370	Mrpl13	1110002D09Rik	mitochondrial ribosomal protein L13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43777544-4	chr13	43777026	43778026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-7586.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-18954155-4	chr8	18953655	18954655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3180.0	NM_001113350	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr5-114923125-4	chr5	114922648	114923648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145209)	promoter-TSS (NM_145209)	-92.0	NM_001359946	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	67.5	137.0	71.5	110.0	222.5	112.5
Merged-chr13-54228200-2	chr13	54227700	54228700	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153432, intron 3 of 3)	intron (NR_153432, intron 3 of 3)	36067.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86753565-4	chr17	86753060	86754060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010137)	promoter-TSS (NM_010137)	-304.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	8.0	9.5	23.0	11.0	14.0	22.0
Merged-chr5-149267110-4	chr5	149266613	149267613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009663, intron 1 of 4)	intron (NM_009663, intron 1 of 4)	2109.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-4310932-4	chr9	4310434	4311434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164574, intron 1 of 2)	L2|LINE|L2	1118.0	NM_026962	69149.0	Mm.25946	NM_026962	ENSMUSG00000025893	Kbtbd3	2200003A07Rik|Bklhd3	kelch repeat and BTB (POZ) domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123236271-4	chr8	123235762	123236762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357300)	promoter-TSS (NM_001357300)	-4.0	NM_030176	78779.0	Mm.41459	NM_030176	ENSMUSG00000033594	Spata2l	2610039E05Rik|AI648233	spermatogenesis associated 2-like	protein-coding	12.0	48.5	45.5	8.5	47.0	39.5
Merged-chr11-87214378-2	chr11	87213878	87214878	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_197987, intron 22 of 23)	intron (NM_197987, intron 22 of 23)	87303.0	NM_197987	68729.0	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133753860-2	chr4	133753360	133754360	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080819)	promoter-TSS (NM_001080819)	-249.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77917287-4	chr9	77916775	77917775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134255)	promoter-TSS (NM_134255)	-90.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39573942-4	chr6	39573476	39574476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178873)	promoter-TSS (NM_178873)	100.0	NM_178873	57869.0	Mm.247957	NM_178873	ENSMUSG00000046947	Adck2	AA408112|BB006057	aarF domain containing kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90043069-4	chr9	90042555	90043555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E2|LTR|ERVL-MaLR	-11212.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	5.0	30.5	10.5	21.0	6.5	12.5
Merged-chr7-127274096-4	chr7	127273598	127274598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009266)	promoter-TSS (NM_009266)	-39.0	NM_009266	20768.0	Mm.20294	NM_009266	ENSMUSG00000049091	Sephs2	Sps2|Ysg3	selenophosphate synthetase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-66438690-4	chr8	66438190	66439190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 6 of 7)	intron (NM_175188, intron 6 of 7)	47840.0	NM_025465	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-42262235-4	chr18	42261731	42262731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134137)	promoter-TSS (NM_134137)	-160.0	NM_134137	107045.0	Mm.312170	NM_134137	ENSMUSG00000024493	Lars	2310045K21Rik|3110009L02Rik|AW536573|mKIAA1352	leucyl-tRNA synthetase	protein-coding	2.5	3.0	11.5	0.0	12.0	6.5
Merged-chr14-32786335-2	chr14	32785835	32786835	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163616, intron 1 of 4)	intron (NM_001163616, intron 1 of 4)	372.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124830534-2	chr6	124830034	124831034	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013538, exon 2 of 6)	exon (NM_013538, exon 2 of 6)	358.0	NM_013538	14793.0	Mm.285723	NM_013538	ENSMUSG00000023505	Cdca3	2410005A12Rik|C8|Grcc8|Tome-1	cell division cycle associated 3	protein-coding	6.5	12.5	6.5	9.0	26.0	8.0
Merged-chr2-160044722-4	chr2	160044238	160045238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	28085.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67354601-4	chr17	67354110	67355110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008984)	promoter-TSS (NM_008984)	-119.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	24.0	62.5	46.0	19.0	52.0	42.5
Merged-chr17-47009655-2	chr17	47009155	47010155	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146078, intron 1 of 46)	intron (NM_146078, intron 1 of 46)	877.0	NM_146078	224826.0	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149504925-4	chr4	149504415	149505415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13326.0	NM_023465	67087.0	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-92250223-2	chr9	92249723	92250723	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011636)	promoter-TSS (NM_011636)	29.0	NM_011636	22038.0	Mm.421956	NM_011636	ENSMUSG00000032369	Plscr1	MmTRA1a|MmTRA1b|Nor1|Tra1|Tra1a|Tra1b|Tras1|Tras2	phospholipid scramblase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106199231-4	chr9	106198705	106199705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026447)	promoter-TSS (NM_026447)	28.0	NM_026447	67905.0	Mm.23018	NM_026447	ENSMUSG00000020253	Ppm1m	2810423O19Rik|AW610647|C77250|PP2Ceta	protein phosphatase 1M	protein-coding	45.0	90.5	91.0	38.5	90.5	77.0
Merged-chr3-94582704-4	chr3	94582204	94583204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029721)	promoter-TSS (NM_029721)	12.0	NM_001082484	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76552542-4	chr12	76552043	76553043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	-4618.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154958222-2	chr4	154957722	154958722	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2701.0	NM_010419	15208.0	Mm.137268	NM_010419	ENSMUSG00000048001	Hes5	bHLHb38	hes family bHLH transcription factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-16434784-4	chr5	16434291	16435291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	-118704.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92531383-2	chr5	92530883	92531883	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25726.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11065401-4	chr19	11064914	11065914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-14848.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-10981796-4	chr15	10981286	10982286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008537)	promoter-TSS (NM_008537)	30.0	NM_008537	17117.0	Mm.2787	NM_008537	ENSMUSG00000022244	Amacr	Macr1	alpha-methylacyl-CoA racemase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90044270-4	chr16	90043768	90044768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69569.0	NM_001145886	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-105823664-4	chr12	105823165	105824165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347440, exon 16 of 21)	exon (NM_001347440, exon 16 of 21)	38968.0	NM_001347440	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	0.5	0.5	6.0	0.0	4.0	0.0
Merged-chr10-127588515-2	chr10	127588015	127589015	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008512, exon 14 of 89)	exon (NM_008512, exon 14 of 89)	32633.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	23.5	51.5	24.5	18.5	51.5	25.0
Merged-chr11-68407435-4	chr11	68406967	68407967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20641.0	NM_008744	18208.0	Mm.39095	NM_008744	ENSMUSG00000020902	Ntn1	AI561871|BC019633|Netrin-1	netrin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86669416-4	chr6	86668903	86669903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010751)	promoter-TSS (NM_010751)	-244.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109687502-4	chr8	109687025	109688025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155034, intron 1 of 10)	MLTR31A_MM|LTR|ERVK	5769.0	NR_155034	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78482082-4	chr10	78481583	78482583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-17135.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123378632-2	chr5	123378132	123379132	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16166.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67952277-2	chr7	67951777	67952777	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010513)	promoter-TSS (NM_010513)	20.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-65787139-4	chr15	65786655	65787655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001356582, exon 1 of 23)	5' UTR (NM_001356582, exon 1 of 23)	135.0	NM_001356582	76740.0	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	27.0	59.5	25.0	40.0	52.5	59.5
Merged-chr10-43641357-4	chr10	43640873	43641873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47946.0	NR_033558	414125.0	Mm.244305	NR_033558	ENSMUSG00000075184	F830002L21Rik	F930017D23Rik	RIKEN cDNA F830002L21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17306659-2	chr6	17306159	17307159	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243064)	promoter-TSS (NM_001243064)	324.0	NM_007616	12389.0	Mm.28278	NM_007616	ENSMUSG00000007655	Cav1	Cav|Cav-1	caveolin 1, caveolae protein	protein-coding	0.0	5.0	0.0	0.5	3.0	3.5
Merged-chr9-123924842-4	chr9	123924340	123925340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	43852.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64398277-4	chr13	64397787	64398787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27767.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	2.0	6.0	17.5	9.5	9.5	4.5
Merged-chr2-117358053-4	chr2	117357560	117358560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15183.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160667491-4	chr2	160666978	160667978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009408, intron 2 of 20)	MLT1F|LTR|ERVL-MaLR	21581.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-13038833-4	chr7	13038343	13039343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168469)	promoter-TSS (NM_001168469)	-568.0	NM_001168469	22192.0	Mm.196580	NM_145578	ENSMUSG00000005575	Ube2m	2510040H03Rik|UBC12|Ubc-rs2	ubiquitin-conjugating enzyme E2M	protein-coding	38.0	60.0	67.0	34.0	59.0	73.5
Merged-chr7-140881822-4	chr7	140881294	140882294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177804)	promoter-TSS (NM_001177804)	75.0	NM_001127351	64384.0	Mm.29760	NM_022433	ENSMUSG00000025486	Sirt3	2310003L23Rik|AI848213|Sir2l3	sirtuin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80644244-4	chr12	80643722	80644722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347409)	promoter-TSS (NM_001347409)	7.0	NM_026244	328133.0	Mm.238279	NM_026244	ENSMUSG00000048833	Slc39a9	2010002A02Rik|2610511I23Rik|4833420E20Rik|AW209151	solute carrier family 39 (zinc transporter), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-12225841-4	chr12	12225335	12226335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36304.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	41.5	114.5	109.5	49.5	125.0	93.0
Merged-chr2-34609689-4	chr2	34609201	34610201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290625, intron 10 of 11)	intron (NM_001290625, intron 10 of 11)	145531.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131160987-2	chr2	131160487	131161487	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026091)	promoter-TSS (NM_026091)	-906.0	NM_026091	67326.0	Mm.27711	NM_026091	ENSMUSG00000027327	1700037H04Rik	-	RIKEN cDNA 1700037H04 gene	protein-coding	2.0	0.0	4.5	0.0	0.0	1.0
Merged-chr6-113660636-4	chr6	113660156	113661156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	ORR1D2|LTR|ERVL-MaLR	22189.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-16877704-4	chr12	16877202	16878202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17276.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	47.0	146.5	114.0	56.0	128.0	75.5
Merged-chr1-155028882-4	chr1	155028379	155029379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54385.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62501126-4	chr10	62500625	62501625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 2 of 3)	intron (NM_001358965, intron 2 of 3)	6632.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19877044-6	chr7	19876578	19877578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177036, exon 7 of 7)	3' UTR (NM_177036, exon 7 of 7)	10887.0	NM_177036	319930.0	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68446535-2	chr10	68446035	68447035	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028491, intron 5 of 7)	intron (NM_028491, intron 5 of 7)	95340.0	NM_028491	73287.0	Mm.141830	NM_028491	ENSMUSG00000019945	Cabcoco1	1700040L02Rik	ciliary associated calcium binding coiled-coil 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23665818-2	chr17	23665355	23666355	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153784, exon 4 of 10)	exon (NM_153784, exon 4 of 10)	5349.0	NM_153784	212733.0	Mm.59997	NM_153784	ENSMUSG00000043782	Bicdl2	BICDR-2|Ccdc64b	BICD family like cargo adaptor 2	protein-coding	0.0	0.5	0.5	0.5	0.0	0.0
Merged-chr9-66347556-4	chr9	66347060	66348060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2890.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-104505898-3	chr7	104505412	104506412	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199146, intron 1 of 7)	Lx4A|LINE|L1	1937.0	NM_199146	209387.0	Mm.277377	NM_199146	ENSMUSG00000057596	Trim30d	AI451617|TRIM30-3|Trim79	tripartite motif-containing 30D	protein-coding	11.0	15.5	12.5	145.5	167.5	178.5
Merged-chr5-140116186-4	chr5	140115678	140116678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359025, intron 14 of 17)	intron (NM_001359025, intron 14 of 17)	58740.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83642918-2	chr17	83642418	83643418	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-11023.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125551673-2	chr7	125551173	125552173	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008700)	promoter-TSS (NM_001008700)	-609.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	17.5	26.5	16.5	17.0	39.5	36.0
Merged-chr19-6363646-4	chr19	6363115	6364115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011750)	promoter-TSS (NM_011750)	-75.0	NM_011750	22668.0	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101721948-4	chr4	101721449	101722449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146146, intron 1 of 18)	L2a|LINE|L2	4542.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101618516-4	chr7	101618036	101619036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-37375.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	70.0	98.0	91.0	49.0	103.5	110.5
Merged-chr8-94180169-4	chr8	94179687	94180687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013602, exon 3 of 3)	exon (NM_013602, exon 3 of 3)	1098.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21073550-4	chr9	21073049	21074049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039824)	promoter-TSS (NM_001039824)	-35.0	NM_001039824	68165.0	Mm.490294	NM_001039824	ENSMUSG00000079677	Fdx1l	B230118G17Rik|Fdx2	ferredoxin 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-125859117-4	chr2	125858621	125859621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009939)	promoter-TSS (NM_009939)	12.0	NM_175154	69976.0	Mm.20216	NM_175154	ENSMUSG00000027207	Galk2	2810017M24Rik|AI327030|Gk2	galactokinase 2	protein-coding	0.0	7.0	0.5	6.0	12.0	1.5
Merged-chr11-95414951-4	chr11	95414356	95415356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359107, intron 1 of 9)	intron (NM_001359107, intron 1 of 9)	773.0	NM_001359107	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25830637-4	chr15	25830150	25831150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12648.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46330193-4	chr19	46329713	46330713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133694, exon 4 of 4)	exon (NM_133694, exon 4 of 4)	2029.0	NM_133694	68431.0	Mm.19973	NM_133694	ENSMUSG00000025226	Fbxl15	0710008C12Rik|Fbxo37	F-box and leucine-rich repeat protein 15	protein-coding	5.0	7.5	4.0	0.0	11.5	3.0
Merged-chr5-52189954-5	chr5	52189456	52190456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015537)	promoter-TSS (NR_015537)	590.0	NR_104311	13204.0	Mm.993	NM_007839	ENSMUSG00000029169	Dhx15	DBP1|DEAH9|Ddx15|HRH2|mDEAH9	DEAH (Asp-Glu-Ala-His) box polypeptide 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129556613-4	chr4	129556108	129557108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010693, intron 5 of 11)	intron (NM_010693, intron 5 of 11)	1203.0	NR_106199	102465997.0		NR_106199	ENSMUSG00000099070	Mir8119	Gm27567|mmu-mir-8119	microRNA 8119	ncRNA	0.0	13.0	10.0	11.0	14.5	16.0
Merged-chr16-36645885-4	chr16	36645382	36646382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	20195.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-3740384-4	chr10	3739889	3740889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159942)	promoter-TSS (NM_001159942)	12.0	NM_001159942	213783.0	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115653117-4	chr5	115652603	115653603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151603, exon 1 of 3)	non-coding (NR_151603, exon 1 of 3)	483.0	NR_151601	75665.0	Mm.233914	NM_001080808	ENSMUSG00000041609	Bicdl1	2210403N09Rik|BICDR-1|Ccdc64	BICD family like cargo adaptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62341256-4	chr9	62340709	62341709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009672)	promoter-TSS (NM_009672)	-134.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80715423-4	chr7	80714918	80715918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 37 of 37)	intron (NM_016721, intron 37 of 37)	-26541.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	3.0	2.0	3.0	6.0	14.0	7.5
Merged-chr16-36999762-4	chr16	36999237	37000237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9270.0	NM_001358217	207215.0	Mm.211899	NM_001037321	ENSMUSG00000047746	Fbxo40	9830003A13Rik|mKIAA1195	F-box protein 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-70871018-4	chr2	70870520	70871520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45540.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8762398-4	chr11	8761899	8762899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97864.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31830790-4	chr14	31830292	31831292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024604)	promoter-TSS (NM_001024604)	-377.0	NM_001024604	105522.0	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25274605-2	chr8	25274105	25275105	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31665.0	NR_040352	74489.0	Mm.256468	NR_040352	ENSMUSG00000110140	5430421F17Rik	-	RIKEN cDNA 5430421F17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-75707992-4	chr13	75707451	75708451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138953, intron 1 of 11)	CpG	467.0	NM_138953	192657.0	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-53851094-4	chr1	53850597	53851597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 21 of 28)	intron (NM_001001883, intron 21 of 28)	1673.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	19.5	60.5	46.5	28.5	83.5	28.0
Merged-chr16-94632110-4	chr16	94631609	94632609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	intron (NM_001113389, intron 2 of 11)	20690.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-90603415-4	chr1	90602929	90603929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133805)	promoter-TSS (NM_133805)	4.0	NM_133805	108679.0	Mm.119177	NM_133805	ENSMUSG00000034432	Cops8	9430009J09Rik|AA408242|Csn8|Sgn8	COP9 signalosome subunit 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-21776276-4	chr4	21775764	21776764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290425)	promoter-TSS (NM_001290425)	-6.0	NM_001290425	77593.0	Mm.154306	NM_152825	ENSMUSG00000040455	Usp45	3110003C05Rik|4930550B20Rik|AI843191|Gcap7	ubiquitin specific petidase 45	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51619623-4	chr11	51619138	51620138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026631)	promoter-TSS (NM_026631)	-135.0	NM_026631	52530.0	Mm.28203	NM_026631	ENSMUSG00000001056	Nhp2	2410130M07Rik|D11Ertd175e|Nola2	NHP2 ribonucleoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-60580945-4	chr3	60580451	60581451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	79772.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	33.5	27.5	19.5	20.5	34.0	25.0
Merged-chr2-181680220-4	chr2	181679707	181680707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356342)	promoter-TSS (NM_001356342)	-90.0	NM_001356343	21400.0	Mm.24245	NM_009326	ENSMUSG00000059540	Tcea2	AI326274|S-II-T1|SII-T1|Tceat	transcription elongation factor A (SII), 2	protein-coding	1.5	12.0	6.5	3.5	9.5	2.0
Merged-chr12-86132930-2	chr12	86132430	86133430	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029601, intron 3 of 7)	intron (NM_029601, intron 3 of 7)	-36411.0	NR_046081	328136.0	Mm.312050	NR_046081	ENSMUSG00000097543	Gm805	-	predicted gene 805	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145233419-2	chr4	145232919	145233919	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	13451.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54687279-4	chr13	54686773	54687773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027396, intron 1 of 10)	CpG	535.0	NM_001146025	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	41.5	140.5	127.5	44.0	144.5	130.5
Merged-chr19-46522643-4	chr19	46522164	46523164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	21016.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57275657-4	chr17	57275160	57276160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3440.0	NM_001163816	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	46.5	112.5	85.5	31.5	77.5	105.0
Merged-chr5-3502787-4	chr5	3502264	3503264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-41069.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115543390-2	chr8	115542890	115543890	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORSL|DNA|hAT-Tip100	163504.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110839869-4	chr5	110839357	110840357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016681)	promoter-TSS (NM_016681)	-80.0	NR_153348	100900.0	Mm.200231	NM_153571	ENSMUSG00000043510	Hscb	AI325508|AW049829|Hsc20	HscB iron-sulfur cluster co-chaperone	protein-coding	49.0	119.5	98.0	31.5	124.0	117.0
Merged-chr5-138997690-4	chr5	138997174	138998174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2721.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90589989-2	chr2	90589489	90590489	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-9342.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78528086-4	chr9	78527579	78528579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-46355.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70698897-4	chr8	70698427	70699427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010592, exon 1 of 1)	5' UTR (NM_010592, exon 1 of 1)	1188.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	131.5	275.0	222.5	105.5	256.0	254.5
Merged-chr13-63702102-4	chr13	63701647	63702647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126476, intron 4 of 4)	intron (NR_126476, intron 4 of 4)	32151.0	NR_126476	75522.0	Mm.54259	NR_126476	ENSMUSG00000113825	1700024I08Rik	-	RIKEN cDNA 1700024I08 gene	ncRNA	6.5	14.0	3.0	3.5	1.0	2.0
Merged-chr2-27318441-4	chr2	27317984	27318984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 3 of 29)	intron (NR_133905, intron 3 of 29)	-71181.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-16895510-4	chr12	16894962	16895962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009072, intron 1 of 32)	CpG	484.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	46.0	117.5	94.0	31.5	88.5	49.0
Merged-chr10-13983910-4	chr10	13983412	13984412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	17533.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	86.5	249.0	151.0	109.0	229.5	172.5
Merged-chr10-34208358-4	chr10	34207861	34208861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172508)	promoter-TSS (NM_172508)	-810.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30420422-4	chr7	30419916	30420916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011827)	promoter-TSS (NM_011827)	-562.0	NM_011827	23900.0	Mm.379050	NM_011827	ENSMUSG00000064109	Hcst	DAP10|KAP10	hematopoietic cell signal transducer	protein-coding	167.0	500.5	318.0	158.5	399.5	252.5
Merged-chr7-19282586-4	chr7	19282107	19283107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013648)	promoter-TSS (NM_013648)	-17.0	NM_013648	20167.0	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58076662-4	chr15	58076169	58077169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042438)	promoter-TSS (NM_001042438)	-161.0	NM_009572	22770.0	Mm.244931	NM_009572	ENSMUSG00000022361	Zhx1	-	zinc fingers and homeoboxes 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-52465643-4	chr18	52465161	52466161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026040)	promoter-TSS (NM_026040)	-32.0	NM_026040	67222.0	Mm.100617	NM_026040	ENSMUSG00000024528	Srfbp1	2810036K01Rik|p49/STRAP	serum response factor binding protein 1	protein-coding	15.5	66.0	54.0	19.5	36.5	41.0
Merged-chr14-76414544-4	chr14	76413999	76414999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310646)	promoter-TSS (NM_001310646)	-462.0	NM_001310646	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43304302-4	chr13	43303802	43304802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033399)	promoter-TSS (NM_001033399)	-130.0	NM_001033399	328232.0	Mm.441399	NM_001033399	ENSMUSG00000051335	Gfod1	9630032O13|AI850995	glucose-fructose oxidoreductase domain containing 1	protein-coding	1.5	0.0	0.5	0.0	0.0	0.0
Merged-chr14-88469242-2	chr14	88468742	88469742	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178685, exon 3 of 3)	exon (NM_178685, exon 3 of 3)	2154.0	NM_178685	219257.0	Mm.128861	NM_178685	ENSMUSG00000050505	Pcdh20	C630015B17Rik|Pcdh13	protocadherin 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84057278-4	chr17	84056784	84057784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21376.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-23208437-4	chr8	23207930	23208930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018743)	promoter-TSS (NM_018743)	23.0	NM_018743	102247.0	Mm.200898	NM_018743	ENSMUSG00000031545	Gpat4	AU041707|AW545732|Agpat6|Tsarg7	glycerol-3-phosphate acyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-116987434-4	chr13	116986920	116987920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	LTR31|LTR|ERV1	38096.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	6.5	23.5	25.5	2.5	10.0	9.5
Merged-chr13-107057262-4	chr13	107056765	107057765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34695.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0.0	3.5	1.0	0.0	3.5	1.0
Merged-chr10-96035250-4	chr10	96034755	96035755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001932, intron 22 of 28)	MTEa|LTR|ERVL-MaLR	94592.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90559111-4	chr2	90558620	90559620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	21527.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	44.5	46.5	38.0	30.5	82.0	35.5
Merged-chr4-32238628-4	chr4	32238122	32239122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-178813.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	9.0	13.0	14.0	0.0	12.0	12.0
Merged-chr19-9917962-4	chr19	9917484	9918484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18451.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	2.5	16.5	4.0	5.0	1.5	3.0
Merged-chr5-102031066-4	chr5	102030559	102031559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	38862.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	19.0	57.0	52.5	25.0	55.0	67.5
Merged-chr11-100738313-4	chr11	100737804	100738804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024456)	promoter-TSS (NM_024456)	-89.0	NM_001305003	19345.0	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127597484-4	chr10	127596999	127597999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	23649.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	13.0	33.0	57.0	35.0	64.0	63.5
Merged-chr16-50588363-4	chr16	50587848	50588848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2155.0	NR_040566	75211.0	Mm.399337	NR_040566		4930542D17Rik	-	RIKEN cDNA 4930542D17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18289368-4	chr16	18288870	18289870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033324)	promoter-TSS (NM_033324)	-202.0	NM_033324	94223.0	Mm.447352	NM_033324	ENSMUSG00000022718	Dgcr8	D16H22S1742E|D16H22S788E|D16Wis2|Gy1|N41|Vo59c07|mir-1306	DGCR8, microprocessor complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14312450-2	chr2	14311950	14312950	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 21 of 29)	intron (NM_008625, intron 21 of 29)	51447.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4232813-3	chr11	4232304	4233304	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3981.0	NM_001013365	18413.0	Mm.131422	NM_001013365	ENSMUSG00000058755	Osm	OncoM	oncostatin M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9826333-4	chr3	9825845	9826845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195031, intron 1 of 8)	intron (NM_001195031, intron 1 of 8)	7334.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149104078-4	chr4	149103556	149104556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010044)	promoter-TSS (NM_010044)	-86.0	NR_104263	13347.0	Mm.41433	NM_010044	ENSMUSG00000028974	Dffa	A330085O09Rik|DFF35|Dff45|ICAD|ICAD-L|ICAD-S	DNA fragmentation factor, alpha subunit	protein-coding	6.0	9.5	8.0	0.0	2.0	3.0
Merged-chr4-97751973-4	chr4	97751487	97752487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	CpG	-25639.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5838027-4	chr11	5837524	5838524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017401)	promoter-TSS (NM_017401)	-8.0	NM_017401	54125.0	Mm.260194	NM_017401	ENSMUSG00000020474	Polm	AI462166|B230309I03Rik|Tdt-N	polymerase (DNA directed), mu	protein-coding	33.5	74.5	64.0	43.0	115.5	84.5
Merged-chr11-101984250-4	chr11	101983770	101984770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028207, intron 1 of 2)	intron (NM_028207, intron 1 of 2)	521.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	45.0	113.0	62.5	28.5	112.5	59.0
Merged-chr5-34535181-4	chr5	34534747	34535747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	-8118.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44120309-4	chr16	44119803	44120803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	18956.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49759173-4	chr7	49758702	49759702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146052)	promoter-TSS (NM_001146052)	96.0	NM_001146049	53415.0	Mm.20801	NM_016865	ENSMUSG00000039745	Htatip2	AW111545|Cc3|Tip30	HIV-1 Tat interactive protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23665941-4	chr11	23665448	23666448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023651)	promoter-TSS (NM_023651)	-13.0	NM_023651	72129.0	Mm.29536	NM_023651	ENSMUSG00000020283	Pex13	2610008O20Rik	peroxisomal biogenesis factor 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103265429-4	chr11	103264929	103265929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	1972.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25557785-4	chr2	25557280	25558280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021519)	promoter-TSS (NM_021519)	-120.0	NM_021519	59022.0	Mm.29945	NM_021519	ENSMUSG00000015092	Edf1	0610008L11Rik|AA409425	endothelial differentiation-related factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-59074588-4	chr19	59074103	59075103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 1 of 16)	intron (NM_001114312, intron 1 of 16)	1466.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66369249-4	chr7	66368754	66369754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 2 of 33)	L1MC5|LINE|L1	12470.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	8.5	7.5	11.0	16.0	23.5	13.0
Merged-chr3-86224246-4	chr3	86223735	86224735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030695)	promoter-TSS (NM_030695)	-455.0	NM_030695	80877.0	Mm.439825	NM_030695	ENSMUSG00000028080	Lrba	C80285|D3Ertd775e|Lab300|Lba	LPS-responsive beige-like anchor	protein-coding	2.5	0.0	4.5	3.0	0.0	2.5
Merged-chr6-97487379-1	chr6	97486879	97487879	+	1000.0	f0_balb.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	441.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	126.0	239.0	207.0	61.0	136.0	143.5
Merged-chr11-46804627-4	chr11	46804153	46805153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6146.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-114473784-4	chr8	114473285	114474285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019573, intron 4 of 8)	intron (NM_019573, intron 4 of 8)	34133.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-29434702-4	chr5	29434194	29435194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033457)	promoter-TSS (NM_001033457)	27.0	NM_001033457	433864.0	Mm.262815	NM_001033457	ENSMUSG00000001569	Nom1	D5Kng1|Gm1040	nucleolar protein with MIF4G domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35430745-4	chr8	35430268	35431268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55027.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	5.5	4.5	16.5	3.5	39.5	19.0
Merged-chr10-80855235-4	chr10	80854730	80855730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025349)	promoter-TSS (NM_025349)	-21.0	NM_001359148	66094.0	Mm.379101	NM_025349	ENSMUSG00000035215	Lsm7	0910001B06Rik|1110033F18Rik	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-90225439-4	chr11	90224947	90225947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24029.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-40958340-4	chr15	40957832	40958832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356998, intron 4 of 6)	intron (NM_001356998, intron 4 of 6)	-215369.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-54863676-4	chr9	54863179	54864179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022655)	promoter-TSS (NM_022655)	-76.0	NM_022655	64602.0	Mm.208991	NM_022655	ENSMUSG00000032293	Ireb2	D9Ertd85e|Irp2	iron responsive element binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12992469-4	chr17	12991965	12992965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175394)	promoter-TSS (NM_175394)	74.0	NM_175394	60532.0	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19295996-4	chr7	19295500	19296500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013648, exon 10 of 10)	3' UTR (NM_013648, exon 10 of 10)	4931.0	NM_001025364	20167.0	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-12573833-4	chr10	12573332	12574332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 50 of 73)	intron (NM_011682, intron 50 of 73)	287903.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-65644776-4	chr7	65644280	65645280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172310)	promoter-TSS (NM_172310)	-118.0	NM_172310	272396.0	Mm.35127	NM_172310	ENSMUSG00000030515	Tarsl2	A530046H20Rik	threonyl-tRNA synthetase-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39413529-4	chr10	39413034	39414034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	L1MB2|LINE|L1	43735.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152903322-4	chr1	152902825	152903825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359257)	promoter-TSS (NM_001359257)	-679.0	NM_001005507	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-77310415-2	chr5	77309922	77310922	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_153798)	promoter-TSS (NM_153798)	-62.0	NM_153798	231329.0	Mm.273217	NM_153798	ENSMUSG00000029250	Polr2b	Pol2rb|Rpb140|Rpb2	polymerase (RNA) II (DNA directed) polypeptide B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-98026204-4	chr3	98025718	98026718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	12680.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127297319-4	chr7	127296815	127297815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253873, intron 1 of 30)	intron (NM_001253873, intron 1 of 30)	1055.0	NM_001253874	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78597042-4	chr15	78596551	78597551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028195)	promoter-TSS (NM_028195)	4.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	49.0	97.0	84.5	31.0	105.0	62.0
Merged-chr5-66151774-6	chr5	66151255	66152255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291226)	promoter-TSS (NM_001291226)	199.0	NM_001127382	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70615183-4	chr11	70614702	70615702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145537)	promoter-TSS (NM_001145537)	-692.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108050682-4	chr3	108050173	108051173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB1|LINE|L1	-5814.0	NM_001160411	14865.0	Mm.31203	NM_026764	ENSMUSG00000027890	Gstm4	1110004G14Rik|GSTM7-7|Gstb-4|Gstb4	glutathione S-transferase, mu 4	protein-coding	2.0	6.5	5.0	10.0	18.0	9.5
Merged-chr5-88636640-2	chr5	88636140	88637140	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 11 of 13)	B2_Mm2|SINE|B2	38940.0	NM_001098476	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-119028864-4	chr10	119028303	119029303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152787, exon 4 of 4)	non-coding (NR_152787, exon 4 of 4)	21696.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87025178-2	chr11	87024678	87025678	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-31416.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123951845-4	chr4	123951346	123952346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34413.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	30.0	40.0	29.5	34.5	53.5	39.0
Merged-chr4-109000528-4	chr4	109000027	109001027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347169)	promoter-TSS (NM_001347169)	-128.0	NM_001346554	230598.0	Mm.274950	NM_146150	ENSMUSG00000053510	Nrd1	2600011I06Rik|AI875733|NRD-C|Nrdc	nardilysin, N-arginine dibasic convertase, NRD convertase 1	protein-coding	7.5	10.0	8.0	6.5	9.5	6.0
Merged-chr4-102517236-4	chr4	102516801	102517801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-52759.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	77.0	83.5	100.5	54.5	57.0	78.5
Merged-chr7-127512409-4	chr7	127511908	127512908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_024331, exon 1 of 1)	non-coding (NR_024331, exon 1 of 1)	425.0	NM_001304266	100043597.0	Mm.428042	NM_175144	ENSMUSG00000053877	Srcap	B930091H02Rik|D030022P06Rik|F630004O05Rik	Snf2-related CREBBP activator protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45658213-4	chr14	45657725	45658725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039106)	promoter-TSS (NM_001039106)	-82.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	138.5	349.5	228.5	134.0	310.5	215.5
Merged-chr2-52741858-2	chr2	52741358	52742358	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019667, intron 1 of 13)	intron (NM_019667, intron 1 of 13)	291.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34761615-4	chr17	34761117	34762117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ETnERV2-int|LTR|ERVK	-17720.0	NM_009780	12268.0	Mm.477109	NM_009780	ENSMUSG00000073418	C4b	C4|Ss	complement component 4B (Chido blood group)	protein-coding	6.5	2.5	1.0	7.5	9.0	8.0
Merged-chr18-75244995-3	chr18	75244403	75245403	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027727, intron 16 of 16)	ORR1F|LTR|ERVL-MaLR	52414.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	6.0	2.0	3.5	3.5	22.0	28.0
Merged-chr5-125410356-2	chr5	125409856	125410856	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20339.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.0	0.0	1.5	0.0	3.5	0.0
Merged-chr8-120552593-2	chr8	120552093	120553093	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 1 of 15)	intron (NM_001145896, intron 1 of 15)	13897.0	NR_106159	102466849.0		NR_106159	ENSMUSG00000098280	Mir7687	Gm27573|mmu-mir-7687	microRNA 7687	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85992643-4	chr12	85992147	85993147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	86394.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-36857739-4	chr3	36857263	36858263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-5343.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84622294-4	chr10	84621812	84622812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027423)	promoter-TSS (NM_027423)	-125.0	NM_027423	70428.0	Mm.335007	NM_027423	ENSMUSG00000034453	Polr3b	2700078H01Rik|A330032P03Rik|C85372|RPC2	polymerase (RNA) III (DNA directed) polypeptide B	protein-coding	7.0	30.5	36.5	5.0	14.0	11.0
Merged-chr10-21067340-4	chr10	21066834	21067834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177776, intron 4 of 6)	intron (NM_001177776, intron 4 of 6)	26514.0	NM_001177776	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-30595573-4	chr3	30595083	30596083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	4287.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152766550-4	chr1	152766037	152767037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346119)	promoter-TSS (NM_001346119)	-5.0	NM_026369	67771.0	Mm.288974	NM_026369	ENSMUSG00000008475	Arpc5	5830443F10Rik|p16-Arc	actin related protein 2/3 complex, subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152797490-4	chr1	152796988	152797988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2665.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72161133-4	chr8	72160615	72161615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023126)	promoter-TSS (NM_023126)	-85.0	NM_023126	17274.0	Mm.162811	NM_023126	ENSMUSG00000003037	Rab8a	AA409338|Mel	RAB8A, member RAS oncogene family	protein-coding	36.0	113.0	106.0	69.0	101.5	93.0
Merged-chr11-46774848-4	chr11	46774350	46775350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166631, intron 6 of 7)	intron (NM_001166631, intron 6 of 7)	23682.0	NM_134248	171283.0	Mm.17771	NM_134248	ENSMUSG00000040405	Havcr1	AI503787|KIM-1|TIM-1|Tim1|Timd1	hepatitis A virus cellular receptor 1	protein-coding	8.0	5.5	5.5	7.0	12.0	9.5
Merged-chr18-80206833-5	chr18	80206440	80207440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178604)	promoter-TSS (NM_178604)	73.0	NM_001042408	27366.0	Mm.172411	NM_025299	ENSMUSG00000057130	Txnl4a	D18Wsu98e|Dim1|Txnl4|U5-15kD|U5-15kDa	thioredoxin-like 4A	protein-coding	121.5	173.5	139.5	124.0	312.0	208.0
Merged-chr4-59805784-4	chr4	59805284	59806284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172468, exon 1 of 9)	5' UTR (NM_172468, exon 1 of 9)	134.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95673892-4	chr3	95673332	95674332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14085.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	47.5	99.5	75.0	47.5	98.5	73.5
Merged-chr14-120172199-4	chr14	120171613	120172613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103556.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95712827-4	chr11	95712344	95713344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045780)	promoter-TSS (NR_045780)	-90.0	NR_045780	432396.0	Mm.426849	NR_045780	ENSMUSG00000086191	Zfp652os	1110035M17Rik	zinc finger protein 652, opposite strand	ncRNA	76.0	204.5	107.5	69.5	209.5	165.0
Merged-chr8-10901151-4	chr8	10900617	10901617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102285, intron 2 of 2)	intron (NR_102285, intron 2 of 2)	1195.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132608414-4	chr4	132607911	132608911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30635.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	5.0	2.0	1.0	5.0	2.0	1.0
Merged-chr19-10689096-4	chr19	10688610	10689610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	CpG	375.0	NM_001361959	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71064793-2	chr17	71064293	71065293	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083934, intron 12 of 36)	intron (NM_001083934, intron 12 of 36)	45236.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	6.5	11.0	6.0	0.0	3.5	1.0
Merged-chr16-30022665-1	chr16	30022165	30023165	+	1000.0	f1_balb.idr	intron (NR_045878, intron 3 of 3)	intron (NR_045878, intron 3 of 3)	13998.0	NR_033631	100043102.0	Mm.30797	NR_033631	ENSMUSG00000097184	4632428C04Rik	Gm4231	RIKEN cDNA 4632428C04 gene	ncRNA	10.5	0.0	0.0	1.0	0.0	0.0
Merged-chr1-165763734-4	chr1	165763235	165764235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011804)	promoter-TSS (NM_011804)	-23.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36739991-4	chr18	36739489	36740489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028036, intron 9 of 11)	intron (NM_028036, intron 9 of 11)	4598.0	NM_010885	17991.0	Mm.29867	NM_010885	ENSMUSG00000014294	Ndufa2	AV000592|B8|C1-B8|CI-B8	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2	protein-coding	17.5	8.0	27.5	36.0	49.5	27.5
Merged-chr4-154964280-7	chr4	154963782	154964782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172990, intron 1 of 18)	CpG	159.0	NR_131230	269614.0	Mm.30042	NM_172990	ENSMUSG00000029056	Pank4	D030031I12Rik|R75150	pantothenate kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74283958-2	chr1	74283458	74284458	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001190444, exon 2 of 11)	exon (NM_001190444, exon 2 of 11)	780.0	NM_001190444	227290.0	Mm.379371	NM_146110	ENSMUSG00000006299	Aamp	AU040907|Aamp-rs	angio-associated migratory protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37562152-4	chr1	37561643	37562643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21127.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-46012724-4	chr9	46012200	46013200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027498)	promoter-TSS (NM_027498)	-10.0	NM_001357241	18475.0	Mm.200859	NM_008775	ENSMUSG00000003131	Pafah1b2	2610005M20Rik|AI747451|AU021353|Pafahb|mus[b]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149793371-4	chr4	149792863	149793863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19096.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	33.0	85.5	53.5	28.0	50.5	38.5
Merged-chr18-77845114-2	chr18	77844614	77845614	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 2 of 14)	intron (NM_013831, intron 2 of 14)	-48724.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6285973-2	chr19	6285473	6286473	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	9077.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-103752955-4	chr5	103752470	103753470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie1a|DNA|hAT-Charlie	-1192.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86898227-2	chr12	86897727	86898727	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13413.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-53616110-4	chr10	53615632	53616632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027830, intron 5 of 13)	intron (NM_027830, intron 5 of 13)	14307.0	NM_027830	71567.0	Mm.278221	NM_027830	ENSMUSG00000058298	Mcm9	9030408O17Rik|Gm235|Mcmdc1	minichromosome maintenance 9 homologous recombination repair factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34551124-2	chr19	34550624	34551624	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355262)	promoter-TSS (NM_001355262)	36.0	NM_001355262	15958.0	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32785713-4	chr5	32785208	32786208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177298)	promoter-TSS (NM_177298)	-82.0	NM_177298	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	7.5	34.5	19.0	8.5	8.0	21.5
Merged-chr15-99387122-2	chr15	99386622	99387622	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	-5825.0	NM_026669	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157493391-2	chr2	157492891	157493891	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66687.0	NM_001291129	18111.0	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-141241370-4	chr5	141240858	141241858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177879)	promoter-TSS (NM_177879)	-176.0	NM_177879	330222.0	Mm.151931	NM_177879	ENSMUSG00000039683	Sdk1	5330440E10|6720466O15Rik	sidekick cell adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95789723-4	chr15	95789211	95790211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1132.0	NM_175344	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64960849-4	chr9	64960350	64961350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175153)	promoter-TSS (NM_175153)	18.0	NM_001077631	69882.0	Mm.272616	NM_175153	ENSMUSG00000034263	Ints14	2010321M09Rik|Vwa9	integrator complex subunit 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34153082-4	chr17	34152559	34153559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010387)	promoter-TSS (NM_010387)	-132.0	NM_010387	14999.0	Mm.460938	NM_010387	ENSMUSG00000079547	H2-DMb1	AI385589|H-2Mb1|H2-Mb1	histocompatibility 2, class II, locus Mb1	protein-coding	79.0	201.5	155.5	41.5	161.0	87.0
Merged-chr17-26576990-4	chr17	26576496	26577496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	MIRc|SINE|MIR	15484.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	8.5	37.0	13.5	14.0	12.5	16.5
Merged-chr8-84270469-4	chr8	84269953	84270953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001294281)	promoter-TSS (NM_001294281)	-51.0	NM_026350	67736.0	Mm.30095	NM_026350	ENSMUSG00000004994	Ccdc130	4930527D15Rik|C77430	coiled-coil domain containing 130	protein-coding	62.5	251.0	165.5	85.5	219.5	201.5
Merged-chr10-75473643-4	chr10	75473142	75474142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24132.0	NR_045841	71125.0	Mm.399516	NR_045841		4933407G14Rik	-	RIKEN cDNA 4933407G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr5-101766476-4	chr5	101765970	101766970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173370, intron 1 of 12)	intron (NM_173370, intron 1 of 12)	1340.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	2.0	30.5	14.5	8.0	19.0	13.5
Merged-chr6-122819889-4	chr6	122819403	122820403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021899)	promoter-TSS (NM_021899)	-281.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43880767-4	chr5	43880264	43881264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	11955.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	37.0	97.0	65.0	48.0	109.5	72.0
Merged-chr9-21760425-4	chr9	21759951	21760951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026282)	promoter-TSS (NM_026282)	-148.0	NM_001357331	67629.0	Mm.295642	NM_026282	ENSMUSG00000074476	Spc24	2410030K01Rik|AV109292|Spbc24	SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86169884-4	chr15	86169400	86170400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-15828.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117717754-4	chr10	117717258	117718258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7000.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	2.5	10.0	8.0	2.5	13.0	7.5
Merged-chr3-41742545-4	chr3	41742049	41743049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291048)	promoter-TSS (NM_001291048)	-35.0	NM_001081411	67161.0	Mm.331001	NM_001081411	ENSMUSG00000059834	Sclt1	2610207F23Rik|4931421F20Rik|CAGGS-SB10|Tg(ACTB-sb10)1Dla|Tg(CAG-sb10)1Dla	sodium channel and clathrin linker 1	protein-coding	64.0	132.0	108.0	56.0	130.0	99.5
Merged-chr1-176814200-4	chr1	176813703	176814703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029756)	promoter-TSS (NM_029756)	-457.0	NR_151682	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	113.0	226.0	131.5	114.0	209.5	141.0
Merged-chr5-139286106-4	chr5	139285625	139286625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	32628.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-119899552-4	chr7	119899046	119900046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126475)	promoter-TSS (NR_126475)	-565.0	NR_126475	73919.0	Mm.46381	NM_029610	ENSMUSG00000030922	Lyrm1	1110065L10Rik|2310004B22Rik|4930404J24Rik	LYR motif containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-67038858-4	chr1	67038372	67039372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021295)	promoter-TSS (NM_021295)	0.0	NM_001190985	14768.0	Mm.20522	NM_021295	ENSMUSG00000026000	Lancl1	AW124738|Gpr69|Gpr69a|p40	LanC (bacterial lantibiotic synthetase component C)-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-64921074-4	chr18	64920591	64921591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	33335.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.0	0.0	5.5	0.0	0.0	1.0
Merged-chr5-145178736-4	chr5	145178266	145179266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291249, intron 6 of 7)	intron (NM_001291249, intron 6 of 7)	11553.0	NM_001291248	54188.0	Mm.196884	NM_178576	ENSMUSG00000029625	Cpsf4	30kDa|C79664	cleavage and polyadenylation specific factor 4	protein-coding	12.5	18.0	9.0	2.5	10.0	14.5
Merged-chr4-55805493-4	chr4	55805006	55806006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-273031.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117108252-4	chr2	117107711	117108711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12860.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44986694-4	chr7	44986199	44987199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019830)	promoter-TSS (NM_019830)	-201.0	NR_045266	100502630.0	Mm.490013	NR_045266	ENSMUSG00000087138	Gm15545	-	predicted gene 15545	ncRNA	27.5	75.5	57.0	28.5	80.0	55.5
Merged-chr13-37581094-4	chr13	37580602	37581602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	235757.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	71.5	122.5	84.0	36.0	116.5	74.0
Merged-chr7-118277646-4	chr7	118277126	118278126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33719.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69554898-4	chr11	69554369	69555369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007911, exon 5 of 5)	3' UTR (NM_007911, exon 5 of 5)	5368.0	NM_007911	13643.0	Mm.249637	NM_007911	ENSMUSG00000003934	Efnb3	EFL-6|ELF-3|Elk-L3|Epl8|LERK-8|NLERK-2	ephrin B3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100742825-2	chr13	100742325	100743325	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025369, intron 1 of 3)	intron (NM_025369, intron 1 of 3)	1834.0	NM_001190264	66128.0	Mm.306173	NM_025369	ENSMUSG00000061474	Mrps36	1110018B13Rik|S36mt	mitochondrial ribosomal protein S36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65666447-8	chr3	65665930	65666930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037923, intron 1 of 2)	CpG	202.0	NM_001166659	624866.0	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding	32.5	75.5	69.5	35.5	114.0	77.0
Merged-chr11-79623303-4	chr11	79622840	79623840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003283)	promoter-TSS (NR_003283)	-177.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-25809279-4	chr6	25808753	25809753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133931)	promoter-TSS (NM_133931)	-27.0	NM_133931	101185.0	Mm.274589	NM_133931	ENSMUSG00000029676	Pot1a	1500031H18Rik|AI851169|Pot1	protection of telomeres 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118103451-4	chr10	118102935	118103935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38352.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	10.5	34.0	25.0	19.5	34.0	17.5
Merged-chr4-53159371-3	chr4	53158876	53159876	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	519.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	2.0	2.0	0.0	0.0	2.5	0.0
Merged-chr7-45299951-4	chr7	45299416	45300416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17043.0	NM_001033176	76713.0	Mm.425445	NM_001033176	ENSMUSG00000070568	Slc6a21	1700039E15Rik|Gm19188	solute carrier family 6 member 21	protein-coding	0.0	0.0	0.0	0.0	4.5	3.0
Merged-chr11-95835481-4	chr11	95834971	95835971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025659, intron 3 of 7)	intron (NM_025659, intron 3 of 7)	-6824.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45585031-3	chr17	45584541	45585541	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001199116)	TTS (NM_001199116)	7352.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21029591-4	chr9	21029090	21030090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010493)	TTS (NM_010493)	217.0	NM_023892	78369.0	Mm.30220	NM_023892	ENSMUSG00000001014	Icam4	1810015M19Rik|Cd242|ICAM-4	intercellular adhesion molecule 4, Landsteiner-Wiener blood group	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70229087-4	chr11	70228583	70229583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007528, exon 2 of 9)	exon (NM_007528, exon 2 of 9)	715.0	NM_007528	12029.0	Mm.12930	NM_007528	ENSMUSG00000000317	Bcl6b	Bazf	B cell CLL/lymphoma 6, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152622016-4	chr1	152621514	152622514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	3203.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-89024430-4	chr11	89023866	89024866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24963.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	79.0	151.5	100.0	44.0	139.0	116.0
Merged-chr8-83652556-4	chr8	83652028	83653028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018771)	promoter-TSS (NM_018771)	-150.0	NM_018771	67903.0	Mm.20945	NM_018771	ENSMUSG00000019433	Gipc1	GIPC|Glut1CIP|Rgs19ip1|Semcap1|TIP-2|TaxIP2	GIPC PDZ domain containing family, member 1	protein-coding	24.0	37.5	30.5	17.0	52.5	40.0
Merged-chr2-52872823-4	chr2	52872324	52873324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	14956.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43521393-4	chr19	43520877	43521877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010324, intron 1 of 8)	(A)n|Simple_repeat|Simple_repeat	3228.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	56.5	109.0	62.0	57.0	106.5	67.0
Merged-chr13-93192393-4	chr13	93191910	93192910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133905)	promoter-TSS (NM_133905)	7.0	NM_001361536	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	12.5	88.0	83.0	51.5	117.5	57.5
Merged-chr1-195131114-4	chr1	195130632	195131632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355061, exon 1 of 9)	5' UTR (NM_001355061, exon 1 of 9)	438.0	NM_001355060	12946.0	Mm.301652	NM_013499	ENSMUSG00000016481	Cr1l	Crry|Mcp|mCRY	complement component (3b/4b) receptor 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-20881593-4	chr5	20881110	20882110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177601)	promoter-TSS (NM_177601)	514.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59902375-4	chr11	59901911	59902911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-19088.0	NR_130986	69854.0	Mm.57859	NR_130986	ENSMUSG00000085551	1810063I02Rik	-	RIKEN cDNA 1810063I02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21890533-4	chr10	21890047	21891047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 1 of 13)	ID_B1|SINE|B4	8363.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	13.0	60.5	34.0	19.5	18.5	24.5
Merged-chr11-96789166-4	chr11	96788697	96789697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007622)	promoter-TSS (NM_007622)	61.0	NM_007622	12412.0	Mm.29055	NM_007622	ENSMUSG00000018666	Cbx1	Cbx|Cbx-rs2|E430007M08Rik|HP1B|Hp1beta|M31|MOD1	chromobox 1	protein-coding	43.5	65.0	75.0	44.0	80.5	89.5
Merged-chr18-53862022-4	chr18	53861496	53862496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152809)	promoter-TSS (NM_152809)	-117.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	35.5	115.5	84.0	28.0	97.0	71.0
Merged-chr15-94600538-2	chr15	94600038	94601038	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10714.0	NM_008971	19230.0	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-16216463-4	chr9	16215955	16216955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	161776.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68735888-4	chr10	68735397	68736397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	12151.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-37271004-4	chr17	37270469	37271469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013819, intron 2 of 7)	intron (NM_013819, intron 2 of 7)	735.0	NM_013819	14991.0	Mm.14437	NM_013819	ENSMUSG00000016206	H2-M3	H-2M3|Hmt|M3a|MuprM3|MuprM301|MuprM302|R4B2	histocompatibility 2, M region locus 3	protein-coding	10.0	48.0	12.5	14.0	36.5	20.0
Merged-chr10-86124337-4	chr10	86123827	86124827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013722, intron 7 of 13)	intron (NM_013722, intron 7 of 13)	28473.0	NR_038024	78170.0	Mm.444790	NR_038024	ENSMUSG00000112493	4930486F22Rik	-	RIKEN cDNA 4930486F22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24761521-4	chr13	24761028	24762028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020567, intron 1 of 6)	GC_rich|Low_complexity|Low_complexity	409.0	NM_020567	57441.0	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67009993-4	chr10	67009494	67010494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001204915, exon 9 of 9)	3' UTR (NM_001204915, exon 9 of 9)	4919.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-35405887-2	chr3	35405387	35406387	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	260276.0	NR_040748	625963.0	Mm.251506	NR_040748	ENSMUSG00000105662	Gm6639	-	predicted gene 6639	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-55842248-4	chr7	55841743	55842743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001164661, exon 1 of 32)	5' UTR (NM_001164661, exon 1 of 32)	172.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46149707-4	chr18	46149206	46150206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49112.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	6.5	3.0	6.0	0.0	2.5	6.0
Merged-chr11-19926129-4	chr11	19925644	19926644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	1702.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	16.5	33.0	18.5	37.0	62.0	43.0
Merged-chr14-74937094-4	chr14	74936577	74937577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	MER44D|DNA|TcMar-Tigger	10800.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29678744-4	chr2	29678235	29679235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	59015.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38552103-4	chr6	38551610	38552610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170848, intron 1 of 8)	CpG	776.0	NM_001170849	192196.0	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32160627-2	chr16	32160127	32161127	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347181, intron 1 of 2)	intron (NM_001347181, intron 1 of 2)	4967.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-143838114-2	chr2	143837614	143838614	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291061, intron 5 of 7)	MLT1E2|LTR|ERVL-MaLR	25059.0	NM_009751	12075.0	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5509972-4	chr6	5509479	5510479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13701.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102588839-4	chr4	102588331	102589331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177982, intron 1 of 9)	intron (NM_001177982, intron 1 of 9)	-1012.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.5	0.5	6.5	0.0	12.0	3.5
Merged-chr11-76217581-4	chr11	76217074	76218074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177367)	promoter-TSS (NM_177367)	-2.0	NM_177367	276919.0	Mm.482713	NM_177367	ENSMUSG00000049396	Gemin4	4932415L08Rik|AU015359	gem nuclear organelle associated protein 4	protein-coding	17.5	47.0	24.0	29.5	37.0	28.5
Merged-chr9-86579817-4	chr9	86579333	86580333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7780.0	NM_027100	69519.0	Mm.272517	NM_027100	ENSMUSG00000032417	Rwdd2a	1700030C20Rik|AI848608|Rwdd2	RWD domain containing 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-106964368-4	chr5	106963874	106964874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009863)	promoter-TSS (NM_009863)	52.0	NM_009863	12545.0	Mm.20842	NM_009863	ENSMUSG00000029283	Cdc7	AI597260|Cdc7l1|muCdc7	cell division cycle 7 (S. cerevisiae)	protein-coding	4.0	9.5	8.0	2.5	4.0	7.5
Merged-chr1-152810839-4	chr1	152810386	152811386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 2 of 15)	intron (NM_010877, intron 2 of 15)	10733.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-13513975-4	chr1	13513474	13514474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MuRRS-int|LTR|ERV1	75936.0	NM_028173	72265.0	Mm.28765	NM_028173	ENSMUSG00000025935	Tram1	1810049E02Rik|TRAMP	translocating chain-associating membrane protein 1	protein-coding	0.5	1.0	0.0	0.0	3.0	1.5
Merged-chr2-128373607-4	chr2	128373081	128374081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	55770.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	11.5	80.0	39.0	17.5	43.0	58.0
Merged-chr8-126852337-4	chr8	126851833	126852833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_151740)	TTS (NR_151740)	3313.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	15.0	25.5	31.0	13.5	27.0	31.0
Merged-chr2-50813953-4	chr2	50813447	50814447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95737.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92666866-4	chr1	92666352	92667352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-18011.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45974828-4	chr13	45974327	45975327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9836.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-52076442-4	chr11	52075993	52076993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166654, intron 13 of 13)	intron (NM_001166654, intron 13 of 13)	-22331.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-3537989-4	chr13	3537484	3538484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008112)	promoter-TSS (NM_008112)	-91.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	40.0	101.5	79.0	31.0	105.0	55.5
Merged-chr17-26532823-4	chr17	26532393	26533393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24421.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	35.0	110.5	48.0	47.0	104.0	53.5
Merged-chr5-146221040-4	chr5	146220529	146221529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256086)	promoter-TSS (NM_001256086)	-58.0	NM_001256086	74132.0	Mm.26696	NM_028774	ENSMUSG00000029634	Rnf6	1200013I08Rik|5730419H05Rik|AA537053	ring finger protein (C3H2C3 type) 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152209818-4	chr3	152209277	152210277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355372)	promoter-TSS (NM_001355372)	306.0	NM_001356363	67035.0	Mm.46746	NM_025926	ENSMUSG00000028035	Dnajb4	1700029A20Rik|2010306G19Rik|5730460G06Rik	DnaJ heat shock protein family (Hsp40) member B4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41606412-4	chr13	41605931	41606931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163572, intron 1 of 2)	CpG	215.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-93955298-1	chr11	93954798	93955798	+	1000.0	f1_c57bl6.idr	intron (NM_001077529, intron 1 of 3)	intron (NM_001077529, intron 1 of 3)	485.0	NM_001077529	18103.0	Mm.1260	NM_008705	ENSMUSG00000020857	Nme2	NM23-H2|NM23B|nm23-M2	NME/NM23 nucleoside diphosphate kinase 2	protein-coding	24.5	63.5	67.5	25.5	78.5	84.0
Merged-chr9-56265101-4	chr9	56264582	56265582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172924, intron 3 of 6)	intron (NM_172924, intron 3 of 6)	-104012.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120606481-2	chr2	120605981	120606981	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159609, intron 4 of 5)	intron (NM_001159609, intron 4 of 5)	2834.0	NM_025657	66606.0	Mm.428639	NM_025657	ENSMUSG00000027286	Lrrc57	2810002D13Rik|AA407405	leucine rich repeat containing 57	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83276435-7	chr17	83275881	83276881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	61098.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13890333-4	chr8	13889808	13890808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025556)	promoter-TSS (NM_025556)	-37.0	NM_025556	66423.0	Mm.29063	NM_025556	ENSMUSG00000031458	Coprs	1700029I03Rik|2410022L05Rik|AA409325|AI256813|C85432|Copr5	coordinator of PRMT5, differentiation stimulator	protein-coding	2.5	25.0	9.0	2.5	27.0	9.0
Merged-chr18-34776923-4	chr18	34776427	34777427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081256)	promoter-TSS (NM_001081256)	-81.0	NM_001081256	277250.0	Mm.277906	NM_029518	ENSMUSG00000038773	Kdm3b	5830462I21Rik|JHDM2B|Jmjd1b|mKIAA1082	KDM3B lysine (K)-specific demethylase 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65929554-4	chr3	65929071	65930071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28678.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	10.0	56.5	22.5	12.5	58.5	49.5
Merged-chr15-101379368-4	chr15	101378884	101379884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9259.0	NM_028770	74127.0	Mm.440055	NM_028770	ENSMUSG00000037185	Krt80	1200016G03Rik|2310041I20Rik|Kb20	keratin 80	protein-coding	9.5	27.0	20.0	5.5	27.5	16.0
Merged-chr13-33003127-4	chr13	33002611	33003611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1430.0	NM_009256	20723.0	Mm.245041	NM_009256	ENSMUSG00000045827	Serpinb9	BB283241|CAP-3|CAP3|PI-9|PI9|Spi6|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88701710-2	chr1	88701210	88702210	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177305, exon 1 of 1)	5' UTR (NM_177305, exon 1 of 1)	481.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34199665-4	chr19	34199152	34200152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	6718.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77910136-4	chr9	77909631	77910631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7234.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33838579-2	chr2	33838079	33839079	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 3 of 9)	intron (NM_175184, intron 3 of 9)	32763.0	NR_045729	320482.0	Mm.442057	NR_045729	ENSMUSG00000086484	Nron	A630071L07Rik|Gm24353	non-protein coding RNA, repressor of NFAT	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-82838600-4	chr7	82838102	82839102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER3|DNA|hAT-Charlie	-28731.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	15.5	14.5	35.5	0.0	1.5	3.5
Merged-chr14-102835433-7	chr14	102834894	102835894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	147238.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129400513-3	chr6	129400008	129401008	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019985, intron 2 of 5)	intron (NM_019985, intron 2 of 5)	3211.0	NM_001204239	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-46669479-4	chr13	46668985	46669985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033192)	promoter-TSS (NM_001033192)	-37.0	NM_001033192	97863.0	Mm.275934	NM_001033192	ENSMUSG00000069237	Fam8a1	C78339	family with sequence similarity 8, member A1	protein-coding	2.0	25.0	3.5	2.5	15.0	9.5
Merged-chr16-10838083-2	chr16	10837583	10838583	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162932, intron 1 of 1)	intron (NM_001162932, intron 1 of 1)	3024.0	NM_001162932	223970.0	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36072065-4	chr16	36071578	36072578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027342)	promoter-TSS (NM_027342)	418.0	NM_001159421	381045.0	Mm.310434	NM_198645	ENSMUSG00000075229	Ccdc58	A930007B11Rik|AI413631	coiled-coil domain containing 58	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69184076-4	chr12	69183479	69184479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025589)	promoter-TSS (NM_025589)	88.0	NM_025589	66483.0	Mm.379115	NM_025589	ENSMUSG00000049751	Rpl36al	2410038A03Rik|RPL36A	ribosomal protein L36A-like	protein-coding	59.5	85.0	82.0	31.0	156.5	101.5
Merged-chr15-59145803-4	chr15	59145313	59146313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63787.0	NM_144800	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	2.5	0.0	0.0	2.5	0.0	0.0
Merged-chr1-66863323-4	chr1	66862812	66863812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007381)	promoter-TSS (NM_007381)	-3.0	NM_007381	11363.0	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137030235-4	chr5	137029749	137030749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039385)	promoter-TSS (NM_001039385)	-46.0	NM_001039385	381677.0	Mm.389697	NM_001039385	ENSMUSG00000037428	Vgf	Gm1052	VGF nerve growth factor inducible	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-29974171-2	chr5	29973671	29974671	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38943.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132859253-4	chr7	132858750	132859750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198017)	promoter-TSS (NM_198017)	25.0	NM_198017	109359.0	Mm.274824	NM_198017	ENSMUSG00000030965	Abraxas2	AA589499|AI853413|Abro1|C430003P19Rik|Fam175b	BRISC complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25780805-4	chr14	25780310	25781310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-11954.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-31280454-4	chr9	31279965	31280965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9064.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19308739-4	chr7	19308216	19309216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347586, intron 1 of 4)	CpG	1329.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43656542-4	chr4	43656040	43657040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026871)	promoter-TSS (NM_026871)	-95.0	NM_026871	68917.0	Mm.25285	NM_026871	ENSMUSG00000028470	Hint2	1190005L05Rik	histidine triad nucleotide binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97579713-4	chr7	97579193	97580193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177947)	promoter-TSS (NM_001177947)	-196.0	NM_001177947	66273.0	Mm.41583	NM_183251	ENSMUSG00000035642	Aamdc	1810020D17Rik|1810037D19Rik|LI2	adipogenesis associated Mth938 domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59888189-4	chr4	59887665	59888665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 6 of 8)	intron (NM_172468, intron 6 of 8)	26891.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	8.0	19.0	13.5	11.0	22.0	14.0
Merged-chr4-70409844-2	chr4	70409344	70410344	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313762, intron 1 of 33)	intron (NM_001313762, intron 1 of 33)	591.0	NM_001313762	214444.0	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44462170-4	chr9	44461729	44462729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7462.0	NM_009476	22269.0	Mm.4453	NM_009476	ENSMUSG00000041523	Upk2	AW491716|UPII	uroplakin 2	protein-coding	16.5	24.5	28.0	14.5	43.5	25.0
Merged-chr4-141606079-4	chr4	141605584	141606584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133754)	promoter-TSS (NM_133754)	-32.0	NM_133754	74202.0	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	246.0	586.0	513.0	27.5	58.0	27.0
Merged-chr3-8986512-2	chr3	8986012	8987012	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	17692.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	22.5	62.0	33.0	24.0	50.0	22.5
Merged-chr6-72025669-4	chr6	72025169	72026169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046180, intron 1 of 2)	intron (NR_046180, intron 1 of 2)	16859.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107888669-4	chr13	107888150	107889150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	CpG	1414.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-29231816-4	chr10	29231322	29232322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20179.0	NM_001162537	212448.0	Mm.132789	NM_001162537	ENSMUSG00000004360	9330159F19Rik	-	RIKEN cDNA 9330159F19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3834652-4	chr12	3834156	3835156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	27496.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167015294-4	chr2	167014807	167015807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153065)	promoter-TSS (NM_153065)	-6.0	NM_153065	228889.0	Mm.295031	NM_153065	ENSMUSG00000017999	Ddx27	C86129	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27876618-4	chr15	27876113	27877113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 10 of 56)	intron (NM_001081302, intron 10 of 56)	149235.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132606043-5	chr4	132605646	132606646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32900.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	9.0	35.0	26.5	14.0	29.0	11.0
Merged-chr17-35424781-4	chr17	35424278	35425278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023124)	promoter-TSS (NM_023124)	-69.0	NM_023124	15019.0	Mm.486287	NM_023124		H2-Q8	H-2Q8|MMS10-T|Ms10t|Qa-2|Qa-8|Qa8	histocompatibility 2, Q region locus 8	protein-coding	7.5	35.5	15.5	8.0	47.0	22.0
Merged-chr9-90053742-2	chr9	90053242	90054242	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007801)	promoter-TSS (NM_007801)	-525.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	6.5	3.5	0.0	0.0	3.0	1.5
Merged-chr9-109000931-4	chr9	109000425	109001425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 3 of 13)	intron (NR_153430, intron 3 of 13)	9023.0	NR_153430	270198.0	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-22225646-4	chr17	22225175	22226175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205095)	promoter-TSS (NM_001205095)	-61.0	NM_001205095	240038.0	Mm.227945	NM_001205095	ENSMUSG00000096433	Zfp994	EG240038|Gm4944	zinc finger protein 994	protein-coding	147.5	230.0	205.0	35.0	103.0	56.0
Merged-chr9-96325735-4	chr9	96325235	96326235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	37980.0	NM_001357213	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	2.0	15.5	12.0	3.0	13.0	18.5
Merged-chr13-55369760-4	chr13	55369253	55370253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016758)	promoter-TSS (NM_016758)	21.0	NM_016758	51791.0	Mm.1426	NM_016758	ENSMUSG00000052087	Rgs14	RPIP1	regulator of G-protein signaling 14	protein-coding	0.0	3.0	0.5	6.0	8.0	1.5
Merged-chr1-144268175-8	chr1	144267649	144268649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-19045.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98832282-2	chr15	98831782	98832782	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016781)	promoter-TSS (NM_016781)	-774.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94771613-4	chr10	94771065	94772065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029852, intron 13 of 15)	intron (NM_029852, intron 13 of 15)	82775.0	NM_029852	77048.0	Mm.296971	NM_029852	ENSMUSG00000020024	Cep83	2600001G24Rik|4921537D05Rik|5730513H21Rik|Ccdc41	centrosomal protein 83	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21918242-4	chr9	21917733	21918733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324531)	promoter-TSS (NM_001324531)	-50.0	NM_001324531	19340.0	Mm.260157	NM_031874	ENSMUSG00000019066	Rab3d	C130057E11Rik	RAB3D, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-104027266-4	chr14	104026797	104027797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045953)	promoter-TSS (NR_045953)	-155.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-85625893-2	chr15	85625393	85626393	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-44072.0	NM_009528	22422.0	Mm.306946	NM_009528	ENSMUSG00000022382	Wnt7b	Wnt-7b	wingless-type MMTV integration site family, member 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40192284-4	chr9	40191770	40192770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030713)	promoter-TSS (NM_030713)	-46.0	NR_153114	80902.0	Mm.132196	NM_030713	ENSMUSG00000025602	Zfp202	C130037E22Rik|Znf202	zinc finger protein 202	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167059764-2	chr2	167059264	167060264	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033196, intron 2 of 13)	intron (NM_001033196, intron 2 of 13)	-3170.0	NR_138563	68949.0	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119000195-4	chr4	118999669	119000669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38202.0	NM_133892	100470.0	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80224496-4	chr18	80224000	80225000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025299, exon 4 of 4)	3' UTR (NM_025299, exon 4 of 4)	17633.0	NM_001042408	27366.0	Mm.172411	NM_025299	ENSMUSG00000057130	Txnl4a	D18Wsu98e|Dim1|Txnl4|U5-15kD|U5-15kDa	thioredoxin-like 4A	protein-coding	35.0	31.5	27.5	51.5	88.0	92.0
Merged-chr6-28622682-4	chr6	28622194	28623194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 10 of 23)	intron (NM_019776, intron 10 of 23)	142346.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72263165-4	chr5	72262676	72263676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 11 of 22)	intron (NR_003966, intron 11 of 22)	59833.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-12163308-2	chr5	12162808	12163808	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-219858.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102408649-4	chr11	102408149	102409149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1132.0	NM_026542	68066.0	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24462431-4	chr7	24461946	24462946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011113)	promoter-TSS (NM_011113)	-37.0	NM_011113	18793.0	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-109280712-4	chr2	109280224	109281224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139303)	promoter-TSS (NM_139303)	-14.0	NM_139303	228421.0	Mm.274086	NM_139303	ENSMUSG00000027115	Kif18a	AU024633|B130001M12Rik|gcd2	kinesin family member 18A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140740003-4	chr5	140739514	140740514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	intron (NM_173405, intron 2 of 7)	15887.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-55652540-4	chr3	55652042	55653042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030595, intron 49 of 57)	intron (NM_030595, intron 49 of 57)	-129968.0	NM_010750	17116.0	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-53383225-2	chr9	53382725	53383725	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_212445)	promoter-TSS (NM_212445)	-798.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117872728-4	chr5	117872212	117873212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 1 of 27)	intron (NM_008712, intron 1 of 27)	5873.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16308672-4	chr7	16308178	16309178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133234)	promoter-TSS (NM_133234)	-905.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41830388-4	chr19	41829940	41830940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008043, exon 1 of 1)	exon (NM_008043, exon 1 of 1)	470.0	NM_008043	14296.0	Mm.4573	NM_008043	ENSMUSG00000067199	Frat1	AW060382	frequently rearranged in advanced T cell lymphomas	protein-coding	23.0	44.0	41.0	8.0	18.0	7.0
Merged-chr7-109859622-2	chr7	109859122	109860122	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020052, intron 2 of 21)	intron (NM_020052, intron 2 of 21)	6057.0	NM_020052	56788.0	Mm.40447	NM_020052	ENSMUSG00000007279	Scube2	4932442O19Rik|Cegf1|Cegp1	signal peptide, CUB domain, EGF-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70609620-4	chr8	70609136	70610136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1322.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	47.0	239.0	154.5	88.0	216.0	179.0
Merged-chr14-70051896-2	chr14	70051396	70052396	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-25549.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108334168-4	chr12	108333666	108334666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010010)	promoter-TSS (NM_010010)	-150.0	NM_010010	13116.0	Mm.41911	NM_010010	ENSMUSG00000021259	Cyp46a1	CH24H|Cyp46	cytochrome P450, family 46, subfamily a, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-7844614-4	chr6	7844094	7845094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_052993)	promoter-TSS (NM_052993)	-630.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101284161-4	chr15	101283607	101284607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026566)	promoter-TSS (NM_026566)	-194.0	NM_026566	68118.0	Mm.482360	NM_026566	ENSMUSG00000037204	Atg101	9430023L20Rik|AA407441|AU022967	autophagy related 101	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23332926-4	chr16	23332418	23333418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 5 of 7)	intron (NM_001252505, intron 5 of 7)	42448.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-67889987-4	chr14	67889604	67890604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177780, intron 1 of 51)	intron (NM_177780, intron 1 of 51)	-30359.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	0.0	16.5	11.5	16.5	9.0	9.0
Merged-chr6-122571004-4	chr6	122570512	122571512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17203.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7040328-4	chr10	7039824	7040824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17139.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	3.0	7.5	9.0	22.0	47.0	31.0
Merged-chr5-138731123-4	chr5	138730656	138731656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23925.0	NM_030565	80752.0	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	8.5	22.0	25.5	7.0	29.0	34.0
Merged-chr9-85329857-2	chr9	85329357	85330357	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2707.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0.5	1.5	1.5	0.5	2.5	5.5
Merged-chr1-36022801-2	chr1	36022301	36023301	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-45599.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-59066868-4	chr12	59066367	59067367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008891)	promoter-TSS (NM_008891)	-52.0	NM_008891	18949.0	Mm.22347	NM_008891	ENSMUSG00000020994	Pnn	AU045199|D12Ertd512e	pinin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180829987-4	chr1	180829479	180830479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16374.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54691411-4	chr11	54690923	54691923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175258, exon 26 of 28)	exon (NM_175258, exon 26 of 28)	95277.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84260484-2	chr15	84259984	84260984	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	intron (NM_133167, intron 1 of 12)	28441.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-104752133-4	chr12	104751637	104752637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148948)	promoter-TSS (NM_148948)	-185.0	NM_148948	192119.0	Mm.21135	NM_148948	ENSMUSG00000041415	Dicer1	1110006F08Rik|D12Ertd7e|mKIAA0928	dicer 1, ribonuclease type III	protein-coding	18.5	35.5	32.0	19.0	32.0	25.0
Merged-chr17-7884975-4	chr17	7884475	7885475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41025.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46778311-4	chr8	46777837	46778837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	38592.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67774835-4	chr18	67774317	67775317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039088)	promoter-TSS (NM_001039088)	-59.0	NM_001360934	72124.0	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	25.0	59.0	51.5	24.0	46.0	64.5
Merged-chr16-11135416-2	chr16	11134916	11135916	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029582)	promoter-TSS (NM_029582)	-884.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135825608-4	chr3	135825113	135826113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001135150)	promoter-TSS (NM_001135150)	-44.0	NM_001135149	67547.0	Mm.30239	NM_026228	ENSMUSG00000053897	Slc39a8	4933419D20Rik|AA986696|BIGM103|ZIP-8|Zip8	solute carrier family 39 (metal ion transporter), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7763952-4	chr9	7763426	7764426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133739)	promoter-TSS (NM_133739)	-151.0	NM_133739	71929.0	Mm.283293	NM_133739	ENSMUSG00000050912	Tmem123	2310075C12Rik	transmembrane protein 123	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-63897029-4	chr7	63896538	63897538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	CpG	-19819.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	36.0	62.0	44.5	28.5	27.5	32.0
Merged-chr4-15266147-3	chr4	15265648	15266648	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_181401, exon 1 of 3)	exon (NM_181401, exon 1 of 3)	328.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100492587-4	chr13	100492079	100493079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153794)	promoter-TSS (NR_153794)	30.0	NM_001360706	23894.0	Mm.272533	NM_022011	ENSMUSG00000021639	Gtf2h2	44kDa|BTF2 p44|BTF2-p44|Btf2p44|p44	general transcription factor II H, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116084207-4	chr9	116083709	116084709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	91154.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	90.0	164.0	142.0	67.5	162.5	134.5
Merged-chr3-146812566-2	chr3	146812068	146813068	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_011100, intron 1 of 9)	CpG	378.0	NM_011100	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70874852-2	chr8	70874352	70875352	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1362.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	0.0	1.5	2.0	0.5	0.0	2.0
Merged-chr2-25578121-2	chr2	25577621	25578621	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001005424, exon 1 of 1)	exon (NM_001005424, exon 1 of 1)	1978.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-89003391-4	chr11	89002883	89003883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009546, intron 1 of 8)	intron (NM_009546, intron 1 of 8)	3980.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	40.5	139.5	106.5	35.0	104.0	117.0
Merged-chr18-46741682-7	chr18	46741212	46742212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303015)	promoter-TSS (NM_001303015)	-133.0	NM_026217	67526.0	Mm.9852	NM_026217	ENSMUSG00000032905	Atg12	4931423H11Rik|A330058M13Rik|Apg12l|Atg12l	autophagy related 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58029741-2	chr1	58029241	58030241	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009676)	promoter-TSS (NM_009676)	-228.0	NM_009676	11761.0	Mm.26787	NM_009676	ENSMUSG00000063558	Aox1	AI196512|AI255253|Ao|Aox-1|Aox-2|Aox2|Moro|Ro	aldehyde oxidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55824207-4	chr4	55823710	55824710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-291735.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47937665-4	chr19	47937138	47938138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163267)	promoter-TSS (NM_001163267)	-74.0	NM_001163267	381229.0	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	0.0	0.0	0.0	0.0	6.0	1.0
Merged-chr12-100084454-4	chr12	100083965	100084965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27866.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-136331318-4	chr3	136330817	136331817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5251.0	NM_001033350	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	8.5	19.0	3.5	2.5	12.0	1.0
Merged-chr9-78039238-4	chr9	78038748	78039748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12710.0	NM_008103	14531.0	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1	protein-coding	5.5	0.0	2.0	3.0	6.0	5.5
Merged-chr8-90938622-4	chr8	90938120	90939120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 3 of 39)	intron (NM_177224, intron 3 of 39)	6371.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	22.5	43.0	64.5	34.0	54.0	22.5
Merged-chr11-3153883-4	chr11	3153379	3154379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 13 of 32)	intron (NM_030207, intron 13 of 32)	29858.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30059493-4	chr16	30059003	30060003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5854.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	1.0	12.5	9.5	0.0	19.0	6.0
Merged-chr2-144014222-2	chr2	144013722	144014722	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2959.0	NM_024281	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80427899-4	chr7	80427390	80428390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	-22454.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	10.5	31.0	14.5	8.0	15.0	15.5
Merged-chr9-71896595-4	chr9	71896094	71897094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253864)	promoter-TSS (NM_001253864)	-498.0	NM_001253863	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33345201-4	chr16	33344704	33345704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	35532.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10982332-4	chr17	10981842	10982842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317726, intron 1 of 6)	intron (NM_001317726, intron 1 of 6)	141983.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-133053031-4	chr7	133052532	133053532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	28828.0	NM_001347623	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117282266-4	chr10	117281745	117282745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017372)	promoter-TSS (NM_017372)	27.0	NM_017372	17105.0	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84957329-3	chr17	84956830	84957830	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159496)	promoter-TSS (NM_001159496)	93.0	NR_027929	68531.0	Mm.249695	NR_027929	ENSMUSG00000097047	1110020A21Rik	2600015P10Rik	RIKEN cDNA 1110020A21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-141008638-4	chr2	141008131	141009131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 4 of 18)	intron (NM_001013802, intron 4 of 18)	-337155.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127668244-4	chr10	127667734	127668734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045171, intron 1 of 1)	intron (NR_045171, intron 1 of 1)	1111.0	NR_045171	72243.0	Mm.482902	NR_045171	ENSMUSG00000040195	1700012D01Rik	-	RIKEN cDNA 1700012D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-181144299-4	chr1	181143803	181144803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026171)	promoter-TSS (NM_026171)	-99.0	NM_026171	67459.0	Mm.263464	NM_026171	ENSMUSG00000026516	Nvl	1200009I24Rik	nuclear VCP-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23127808-4	chr16	23127296	23128296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145480)	promoter-TSS (NM_145480)	-66.0	NM_145480	106344.0	Mm.386835	NM_145480	ENSMUSG00000022881	Rfc4	A1|AI894123|AU040575|RFC37	replication factor C (activator 1) 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91933382-4	chr16	91932890	91933890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1760.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-3281914-4	chr18	3281421	3282421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311067)	promoter-TSS (NM_001311067)	-174.0	NM_001110855	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	68.0	194.0	136.0	69.0	194.5	134.5
Merged-chr12-80231620-4	chr12	80231149	80232149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 1 of 20)	intron (NM_134156, intron 1 of 20)	28722.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91041072-2	chr1	91040572	91041572	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	RSINE1|SINE|B4	-12372.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43420010-4	chr4	43419517	43420517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037709, intron 2 of 11)	intron (NM_001037709, intron 2 of 11)	9117.0	NM_177377	329831.0	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5093813-4	chr6	5093313	5094313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 6 of 15)	MLT1F2|LTR|ERVL-MaLR	100133.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103885107-2	chr14	103884607	103885607	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40631.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141392152-4	chr7	141391659	141392659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011528)	promoter-TSS (NM_011528)	-1.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3514801-4	chr11	3514320	3515320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_053267, exon 1 of 5)	5' UTR (NM_053267, exon 1 of 5)	136.0	NM_053267	114679.0	Mm.34046	NM_053267	ENSMUSG00000075702	Selenom	1500040L08Rik|A230103K18|Selm|Sepm	selenoprotein M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115423910-4	chr8	115423420	115424420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	282974.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-113450109-4	chr2	113449604	113450604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 2 of 16)	intron (NM_001285459, intron 2 of 16)	9040.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	41.5	137.0	86.0	40.0	137.5	90.5
Merged-chr6-72140593-4	chr6	72140095	72141095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 3 of 6)	intron (NM_001035228, intron 3 of 6)	-17398.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11063274-4	chr16	11062774	11063774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3024.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127378327-4	chr2	127377835	127378835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15049.0	NM_009633	11552.0	Mm.347390	NM_009633	ENSMUSG00000058620	Adra2b	Adra-2b|[a]2B|a2b-AR|alpha2-C2|alpha2B	adrenergic receptor, alpha 2b	protein-coding	6.5	66.5	31.0	11.5	28.5	40.5
Merged-chr4-135494186-2	chr4	135493686	135494686	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361484, intron 1 of 11)	intron (NM_001361484, intron 1 of 11)	392.0	NM_001347220	74552.0	Mm.26548	NM_028995	ENSMUSG00000028803	Nipal3	9130020G22Rik|AI480660|Npal3	NIPA-like domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136986913-4	chr5	136986414	136987414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011962)	promoter-TSS (NM_011962)	-10.0	NM_001310748	70103.0	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	77.5	147.0	186.0	103.5	217.0	167.0
Merged-chr17-10840295-4	chr17	10839824	10840824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016694)	promoter-TSS (NM_016694)	-35.0	NM_001317726	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-63998208-4	chr15	63997718	63998718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360035)	promoter-TSS (NM_001360035)	-152.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-62448271-4	chr17	62447793	62448793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	433024.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-100160458-4	chr10	100159969	100160969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	144648.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3424671-4	chr2	3424152	3425152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302684, intron 1 of 14)	intron (NM_001302684, intron 1 of 14)	521.0	NM_001302684	227525.0	Mm.23483	NM_146114	ENSMUSG00000026648	Dclre1c	9930121L06Rik|AI661365|Art|Snm1l	DNA cross-link repair 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-133310112-4	chr3	133309638	133310638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146141)	promoter-TSS (NM_146141)	28.0	NM_001293641	74776.0	Mm.210305	NM_146141	ENSMUSG00000028013	Ppa2	1110013G13Rik|Sid6306	pyrophosphatase (inorganic) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153111568-4	chr2	153111089	153112089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 1 of 12)	Tigger7|DNA|TcMar-Tigger	3121.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	59.0	78.0	81.5	41.5	61.0	75.0
Merged-chr11-54972186-2	chr11	54971686	54972686	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9246.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23193227-4	chr17	23192726	23193726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009555)	promoter-TSS (NM_009555)	2.0	NM_009555	22700.0	Mm.437934	NM_009555	ENSMUSG00000002617	Zfp40	CTfin12|NTfin12|Zfp-40	zinc finger protein 40	protein-coding	30.0	12.5	15.0	1.0	31.5	8.5
Merged-chr3-27710094-2	chr3	27709594	27710594	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 1 of 26)	CpG	358.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145276426-4	chr6	145275908	145276908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25856.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	134.5	366.0	283.5	188.5	391.0	315.0
Merged-chr13-9878675-4	chr13	9878188	9879188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_033269, exon 5 of 5)	exon (NM_033269, exon 5 of 5)	-113367.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135168414-4	chr5	135167933	135168933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009745)	promoter-TSS (NM_009745)	61.0	NM_009745	12054.0	Mm.405834	NM_009745	ENSMUSG00000029681	Bcl7b	-	B cell CLL/lymphoma 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46328442-4	chr19	46327941	46328941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_133694, exon 1 of 4)	5' UTR (NM_133694, exon 1 of 4)	257.0	NM_133694	68431.0	Mm.19973	NM_133694	ENSMUSG00000025226	Fbxl15	0710008C12Rik|Fbxo37	F-box and leucine-rich repeat protein 15	protein-coding	0.0	10.5	7.0	1.0	1.5	3.5
Merged-chr5-146764808-4	chr5	146764290	146765290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 2 of 8)	MTC|LTR|ERVL-MaLR	30166.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	19.5	17.5	26.0	20.0	12.0	23.5
Merged-chr2-32495480-4	chr2	32494978	32495978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39881.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-40404788-4	chr1	40404271	40405271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24799.0	NM_001294171	17082.0	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59363241-4	chr4	59362740	59363740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 10 of 16)	intron (NM_001163288, intron 10 of 16)	75393.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	43.5	68.0	58.5	27.0	93.0	78.0
Merged-chr11-3181489-3	chr11	3181000	3182000	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 4 of 32)	intron (NM_030207, intron 4 of 32)	11963.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158500194-4	chr2	158499693	158500693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291138)	TTS (NM_001291138)	-2419.0	NM_145635	246747.0	Mm.28800	NM_145635	ENSMUSG00000044405	Adig	SMAF-1|Smaf1	adipogenin	protein-coding	15.0	7.5	26.5	12.5	12.0	3.0
Merged-chr14-76857586-4	chr14	76857076	76858076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97445.0	NR_153763	73883.0	Mm.489041	NR_153763		4930431P22Rik	-	RIKEN cDNA 4930431P22 gene	ncRNA	11.5	13.5	7.5	36.0	45.0	27.5
Merged-chr1-79776083-4	chr1	79775598	79776598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081210)	promoter-TSS (NM_001081210)	80.0	NM_001081210	69163.0	Mm.238455	NM_001081210	ENSMUSG00000026248	Mrpl44	1810030E18Rik|5730593H20Rik|AI463302	mitochondrial ribosomal protein L44	protein-coding	33.5	54.5	55.5	30.0	65.0	66.0
Merged-chr15-76198170-2	chr15	76197670	76198670	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201393)	promoter-TSS (NM_201393)	39.0	NM_201393	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122637963-3	chr5	122637441	122638441	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5970.0	NM_001038839	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	4.0	0.5	2.5	4.0	17.5	15.5
Merged-chr7-132931654-2	chr7	132931154	132932154	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207302, intron 1 of 9)	CpG	512.0	NM_001362198	360216.0	Mm.389984	NM_207302	ENSMUSG00000030967	Zranb1	9330160G10Rik|D7Wsu87e|Gm1956|Trabid	zinc finger, RAN-binding domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-148212135-4	chr6	148211631	148212631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015615)	promoter-TSS (NR_015615)	-157.0	NR_015615	320737.0	Mm.137858	NR_015615		4732416N19Rik	-	RIKEN cDNA 4732416N19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79141637-4	chr12	79141161	79142161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009705, intron 2 of 7)	MMAR1|DNA|TcMar-Mariner	10873.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	26.5	70.0	45.0	44.5	121.5	106.0
Merged-chr3-146352384-4	chr3	146351915	146352915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26529.0	NR_033542	100038607.0	Mm.365888	NR_033542	ENSMUSG00000105602	Gm10636	-	predicted gene 10636	ncRNA	2.0	3.0	1.5	3.5	5.5	0.0
Merged-chr9-59537854-4	chr9	59537331	59538331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-1709.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30473668-2	chr2	30473168	30474168	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_030244, exon 1 of 1)	exon (NM_030244, exon 1 of 1)	531.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-13687789-2	chr17	13687289	13688289	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72752.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49846716-4	chr11	49846205	49847205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163672)	promoter-TSS (NM_001163672)	-46.0	NM_001163671	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100737861-4	chr15	100737380	100738380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5143.0	NR_045782	619313.0	Mm.123436	NR_045781	ENSMUSG00000116504	I730030J21Rik	-	RIKEN cDNA I730030J21 gene	ncRNA	6.5	6.0	6.5	0.5	2.5	0.5
Merged-chr10-99261882-5	chr10	99261403	99262403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1328.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-130092608-3	chr6	130092105	130093105	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013793, intron 3 of 7)	intron (NM_013793, intron 3 of 7)	-25334.0	NM_001252577	16635.0	Mm.333431	NM_010649	ENSMUSG00000079852	Klra4	Chok|Klra32|Klra33|Ly-49d|Ly49d|ly49r<129>	killer cell lectin-like receptor, subfamily A, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-31654886-4	chr12	31654389	31655389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028002)	promoter-TSS (NM_028002)	20.0	NM_001163126	238123.0	Mm.173068	NM_001163126	ENSMUSG00000035933	Cog5	5430405C01Rik|C87247|D18362|GOLTC1|GTC90	component of oligomeric golgi complex 5	protein-coding	109.5	229.0	261.0	70.5	153.0	133.0
Merged-chr13-56615424-4	chr13	56614893	56615893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155548, intron 2 of 16)	intron (NR_155548, intron 2 of 16)	5807.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117412840-4	chr10	117412348	117413348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	34587.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	10.5	34.0	29.5	12.0	11.5	25.0
Merged-chr5-24101062-4	chr5	24100584	24101584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161800, intron 1 of 9)	CpG	494.0	NM_001161800	52323.0	Mm.273768	NM_026448	ENSMUSG00000028986	Klhl7	2700038B03Rik|D5Ertd363e|SBBI26	kelch-like 7	protein-coding	2.0	14.0	20.0	14.0	21.0	14.0
Merged-chr19-5912863-4	chr19	5912357	5913357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291078)	promoter-TSS (NM_001291078)	14.0	NM_011262	19708.0	Mm.2651	NM_011262	ENSMUSG00000024826	Dpf2	2210010M07Rik|BAF45D|Req|ubi-d4	D4, zinc and double PHD fingers family 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7667476-4	chr10	7666970	7667970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145706)	promoter-TSS (NM_145706)	-34.0	NM_145706	69912.0	Mm.299887	NM_145706	ENSMUSG00000040034	Nup43	2610016K01Rik|2610529I12Rik|AA409950|p42	nucleoporin 43	protein-coding	2.5	0.0	0.0	0.0	0.5	0.0
Merged-chr15-75925077-2	chr15	75924577	75925577	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357005, intron 10 of 10)	intron (NM_001357005, intron 10 of 10)	-3517.0	NM_025412	66194.0	Mm.250599	NM_025412	ENSMUSG00000022571	Pycrl	1110058B13Rik|2700073G24Rik|Pycr3	pyrroline-5-carboxylate reductase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14250351-4	chr2	14249847	14250847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 4 of 29)	intron (NM_008625, intron 4 of 29)	-10656.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-44053615-4	chr17	44053143	44054143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25159.0	NM_001168620	83965.0	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	15.5	9.0	0.0	0.0	12.0	5.0
Merged-chr3-58520476-4	chr3	58519975	58520975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-5346.0	NM_001005509	229317.0	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-137952418-4	chr3	137951903	137952903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 3 of 8)	intron (NM_011932, intron 3 of 8)	29146.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80426521-4	chr7	80426041	80427041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21105.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	66.5	140.0	77.5	29.5	62.5	70.0
Merged-chr17-5195569-4	chr17	5195081	5196081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	200507.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-93206836-4	chr5	93206331	93207331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017367)	promoter-TSS (NM_017367)	313.0	NM_029363	75610.0	Mm.175502	NM_029363	ENSMUSG00000029384	2010109A12Rik	-	RIKEN cDNA 2010109A12 gene	protein-coding	37.5	68.5	78.0	26.5	54.5	52.0
Merged-chr13-5864542-7	chr13	5864036	5865036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011803, intron 1 of 3)	intron (NM_011803, intron 1 of 3)	3047.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.0	2.0	0.0	0.0	1.5	0.0
Merged-chr8-34965113-2	chr8	34964587	34965587	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175091, exon 1 of 27)	exon (NM_175091, exon 1 of 27)	603.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	16.0	18.5	19.0	16.5	38.0	26.5
Merged-chr1-155051203-5	chr1	155050634	155051634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32130.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88706062-4	chr4	88705554	88706554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14786.0	NM_008336	15974.0	Mm.377093	NM_008336	ENSMUSG00000100079	Ifnab	-	interferon alpha B	protein-coding	5.5	21.0	10.0	12.5	19.5	24.5
Merged-chr13-97240518-4	chr13	97240041	97241041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007930)	promoter-TSS (NM_007930)	-564.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-51718807-4	chr12	51718304	51719304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001329698, intron 2 of 5)	intron (NM_001329698, intron 2 of 5)	-26890.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34154793-8	chr8	34154301	34155301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026432, exon 1 of 6)	exon (NM_026432, exon 1 of 6)	238.0	NM_026432	67887.0	Mm.290353	NM_026432	ENSMUSG00000031532	Saraf	1810045K07Rik|Tmem66	store-operated calcium entry-associated regulatory factor	protein-coding	169.0	459.5	278.0	169.5	380.0	335.0
Merged-chr4-62304391-2	chr4	62303891	62304891	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001045528, exon 26 of 28)	exon (NM_001045528, exon 26 of 28)	12844.0	NM_001290518	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-80614857-4	chr1	80614358	80615358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 4 of 55)	intron (NM_175291, intron 4 of 55)	50494.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20643312-4	chr9	20642835	20643835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013911)	promoter-TSS (NM_013911)	-1.0	NM_025401	66177.0	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50591027-4	chr9	50590521	50591521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12828.0	NM_025848	66925.0	Mm.10406	NM_025848	ENSMUSG00000000171	Sdhd	3110001M13Rik|AVLL5809|C78570|PRO19626	succinate dehydrogenase complex, subunit D, integral membrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120812621-4	chr5	120812134	120813134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003507)	promoter-TSS (NR_003507)	-1.0	NR_003507	23961.0	Mm.233471	NM_001083925	ENSMUSG00000029605	Oas1b	Flv|L1|Mmu-L1|Oas1|Oias-2|Oias2|Wnv	2'-5' oligoadenylate synthetase 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-33347269-4	chr4	33346777	33347777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305273, intron 8 of 15)	intron (NM_001305273, intron 8 of 15)	36966.0	NM_001305273	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-94597936-2	chr15	94597436	94598436	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8112.0	NM_008971	19230.0	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45279640-4	chr2	45279168	45280168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-162226.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-26469291-4	chr12	26468812	26469812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020557)	promoter-TSS (NM_020557)	97.0	NM_020557	22169.0	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	25.5	106.5	75.0	28.0	105.5	71.0
Merged-chr1-89070219-4	chr1	89069709	89070709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133816)	promoter-TSS (NM_133816)	-206.0	NM_133816	98402.0	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-69611625-4	chr13	69611126	69612126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145354)	promoter-TSS (NM_145354)	-163.0	NM_175283	78925.0	Mm.451912	NM_175283	ENSMUSG00000021594	Srd5a1	0610031P22Rik|4930435F02Rik|S5AR 1|Srd5a-1	steroid 5 alpha-reductase 1	protein-coding	14.0	30.0	20.5	6.0	32.0	20.0
Merged-chr15-100227776-4	chr15	100227284	100228284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007497)	promoter-TSS (NM_007497)	-75.0	NM_007497	11908.0	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	4.0	24.0	16.5	4.0	26.5	16.0
Merged-chr5-100561460-2	chr5	100560960	100561960	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139198, intron 2 of 4)	intron (NM_139198, intron 2 of 4)	10745.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65929984-4	chr3	65929480	65930480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28269.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	41.0	139.0	59.5	55.5	145.0	100.5
Merged-chr6-116198108-4	chr6	116197600	116198600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4726.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46890582-4	chr17	46890056	46891056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178385)	promoter-TSS (NM_178385)	-65.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57535647-4	chr6	57535150	57536150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175523)	promoter-TSS (NM_175523)	-224.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10319811-4	chr17	10319293	10320293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159517)	promoter-TSS (NM_001159517)	-126.0	NR_037588	100526796.0	Mm.384135	NR_037588		Cahm	B930003M22Rik	colon adenocarcinoma hypermethylated RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-49066506-4	chr14	49066001	49067001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144535)	promoter-TSS (NM_144535)	-48.0	NM_001360070	74385.0	Mm.379235	NM_144535	ENSMUSG00000036291	Ap5m1	4932432K03Rik|Mu5|Mudeng	adaptor-related protein complex 5, mu 1 subunit	protein-coding	68.0	150.5	162.0	59.0	153.5	93.5
Merged-chr17-7917403-4	chr17	7916884	7917884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8616.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135909683-4	chr5	135909187	135910187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018871, exon 2 of 2)	3' UTR (NM_018871, exon 2 of 2)	21768.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116006875-4	chr3	116006376	116007376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163515)	promoter-TSS (NM_001163515)	530.0	NM_023214	66500.0	Mm.34550	NM_023214	ENSMUSG00000054414	Slc30a7	1810059J10Rik|2610034N15Rik|4833428C12Rik|AI467242|ZnT-7|ZnT7|Zntl2	solute carrier family 30 (zinc transporter), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-55389827-4	chr18	55389322	55390322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-397231.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103034270-4	chr14	103033787	103034787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045657)	promoter-TSS (NR_045657)	-484.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-56598838-2	chr14	56598338	56599338	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145978, intron 12 of 34)	intron (NM_001145978, intron 12 of 34)	21675.0	NR_153784	102635191.0		NR_153784		Gm16573	-	predicted gene 16573	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88832581-3	chr3	88832088	88833088	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015498)	promoter-TSS (NR_015498)	-101.0	NR_015498	319830.0	Mm.400394	NR_015498		1500004A13Rik	5430404N14Rik|BB132176	RIKEN cDNA 1500004A13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36530536-4	chr5	36529994	36530994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001113364, exon 1 of 12)	5' UTR (NM_001113364, exon 1 of 12)	129.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	3.0	0.5	0.5	0.0	0.0	7.5
Merged-chr7-45643739-4	chr7	45643243	45644243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172418, intron 7 of 9)	intron (NM_172418, intron 7 of 9)	3766.0	NM_172418	74490.0	Mm.107442	NM_172418	ENSMUSG00000042918	Mamstr	2810022D01Rik|5430432N15Rik|AW743872|Mastr	MEF2 activating motif and SAP domain containing transcriptional regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19830928-4	chr7	19830440	19831440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8185.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35841446-4	chr17	35840909	35841909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001010833)	promoter-TSS (NM_001010833)	-89.0	NM_001010833	240087.0	Mm.218511	NM_001010833	ENSMUSG00000061607	Mdc1	6820401C03|AA413496|Nfbd1|mKIAA0170	mediator of DNA damage checkpoint 1	protein-coding	4.5	8.5	2.5	6.0	3.5	2.0
Merged-chr7-122251915-4	chr7	122251426	122252426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32430.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32966905-4	chr2	32966384	32967384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	3583.0	NR_002898	104367.0	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3323321-4	chr19	3322820	3323820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013495)	promoter-TSS (NM_013495)	19.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	28.0	93.5	38.5	28.0	94.5	41.0
Merged-chr5-147430193-4	chr5	147429762	147430762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001359433, exon 1 of 20)	5' UTR (NM_001359433, exon 1 of 20)	106.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	4.5	9.5	4.0	0.0	0.5	1.0
Merged-chr2-154677200-4	chr2	154676718	154677718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	20192.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75773465-4	chr10	75772939	75773939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010027)	promoter-TSS (NM_010027)	-65.0	NM_010027	13202.0	Mm.298947	NM_010027	ENSMUSG00000001666	Ddt	C78655	D-dopachrome tautomerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59616112-4	chr2	59615631	59616631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198294, intron 1 of 26)	intron (NM_198294, intron 1 of 26)	4089.0	NM_198294	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68871952-4	chr11	68871464	68872464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16589.0	NM_177060	320040.0	Mm.305696	NM_177060	ENSMUSG00000046490	Rnf222	9930039A11Rik	ring finger protein 222	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-4346974-4	chr10	4346481	4347481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031185, intron 2 of 3)	CpG	40494.0	NM_001359811	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3929642-4	chr19	3929139	3930139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026316)	promoter-TSS (NM_026316)	77.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99333158-4	chr15	99332662	99333662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310622, intron 4 of 25)	intron (NM_001310622, intron 4 of 25)	29878.0	NM_001348256	54614.0	Mm.358668	NM_018786	ENSMUSG00000023007	Prpf40b	2610317D23Rik|Hypc	pre-mRNA processing factor 40B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-32510544-4	chr3	32510056	32511056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144519)	promoter-TSS (NM_144519)	6.0	NM_001161818	67778.0	Mm.285620	NM_144519	ENSMUSG00000027667	Zfp639	6230400O18Rik|ANC-2H01|ZASC1|Znf639	zinc finger protein 639	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171222588-4	chr1	171222096	171223096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037170)	promoter-TSS (NM_001037170)	-82.0	NM_001037170	641376.0	Mm.288374	NM_001037170	ENSMUSG00000005674	Tomm40l	-	translocase of outer mitochondrial membrane 40-like	protein-coding	24.5	77.0	42.0	33.5	100.0	41.0
Merged-chr18-80319375-4	chr18	80318875	80319875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190373, intron 3 of 3)	intron (NM_001190373, intron 3 of 3)	44879.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-174077918-4	chr2	174077412	174078412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102423, intron 1 of 7)	intron (NM_001102423, intron 1 of 7)	861.0	NM_001102423	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-33213958-4	chr18	33213452	33214452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133774)	promoter-TSS (NM_133774)	-90.0	NM_001347624	170459.0	Mm.127058	NM_133774	ENSMUSG00000024378	Stard4	4632419C16Rik|9030213J02Rik	StAR-related lipid transfer (START) domain containing 4	protein-coding	0.5	3.0	0.0	2.0	1.5	0.0
Merged-chr1-191087147-4	chr1	191086633	191087633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11281.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	6.5	47.0	44.5	46.5	33.0	42.5
Merged-chr19-37511093-4	chr19	37510592	37511592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39326.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	18.5	12.5	19.5	15.0	14.5	23.0
Merged-chr2-3475059-4	chr2	3474560	3475560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022724)	promoter-TSS (NM_022724)	-74.0	NR_027509	64707.0	Mm.23483	NM_022724	ENSMUSG00000026646	Suv39h2	4930507K23Rik|AA536750|D030054H19Rik|D2Ertd544e|KMT1B	suppressor of variegation 3-9 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160873081-4	chr2	160872571	160873571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177263)	promoter-TSS (NM_177263)	-81.0	NM_177263	320799.0	Mm.436734	NM_177263	ENSMUSG00000035877	Zhx3	1810059C13Rik|4932418O04Rik|9530010N21Rik|Tix1|mKIAA0395	zinc fingers and homeoboxes 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119801125-4	chr13	119800619	119801619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9997.0	NM_001302550	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126162739-4	chr4	126162216	126163216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025856)	promoter-TSS (NM_025856)	-51.0	NM_025856	66938.0	Mm.29813	NM_025856	ENSMUSG00000073758	Sh3d21	1700029G01Rik|AU019788	SH3 domain containing 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113507873-2	chr13	113507373	113508373	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR10C|LTR|ERVK	-5029.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88683097-4	chr10	88682579	88683579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011461)	promoter-TSS (NM_011461)	-56.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158306355-4	chr2	158305849	158306849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008489)	promoter-TSS (NM_008489)	-144.0	NM_008489	16803.0	Mm.218846	NM_008489	ENSMUSG00000016024	Lbp	Bpifd2|Ly88	lipopolysaccharide binding protein	protein-coding	91.5	275.0	198.5	62.0	129.0	117.5
Merged-chr9-32475204-4	chr9	32474700	32475700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 2 of 8)	intron (NM_008026, intron 2 of 8)	66252.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-25881896-4	chr18	25881391	25882391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127734.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-60823332-4	chr15	60822844	60823844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001162926, exon 2 of 2)	exon (NM_001162926, exon 2 of 2)	379.0	NR_030696	320469.0	Mm.230853	NM_177166		9930014A18Rik	-	RIKEN cDNA 9930014A18 gene	ncRNA	1.0	14.5	3.5	0.5	11.5	4.5
Merged-chr6-145343012-4	chr6	145342471	145343471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-44654.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	128.0	386.5	215.0	103.5	288.5	195.0
Merged-chr16-38452743-4	chr16	38452228	38453228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007414)	promoter-TSS (NM_007414)	-39.0	NM_007414	11544.0	Mm.20047	NM_007414	ENSMUSG00000002844	Adprh	Arh1	ADP-ribosylarginine hydrolase	protein-coding	1.0	4.5	7.0	2.0	0.0	14.5
Merged-chr7-98481202-2	chr7	98480702	98481702	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13020.0	NM_001113379	434215.0	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89210316-4	chr3	89209814	89210814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013604, exon 5 of 8)	exon (NM_013604, exon 5 of 8)	4021.0	NM_013604	17827.0	Mm.280943	NM_013604	ENSMUSG00000064068	Mtx1	Gcap6|Mtx	metaxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45108199-2	chr2	45107699	45108699	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	2078.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134921057-2	chr6	134920554	134921554	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009875, exon 1 of 3)	exon (NM_009875, exon 1 of 3)	653.0	NM_009875	12576.0	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	146.5	255.0	207.0	125.0	298.0	189.0
Merged-chr11-35297589-4	chr11	35297101	35298101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011412, intron 4 of 35)	intron (NM_011412, intron 4 of 35)	176145.0	NM_011412	20564.0	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit guidance ligand 3	protein-coding	15.5	10.0	7.5	0.0	8.5	2.5
Merged-chr12-28751331-1	chr12	28750831	28751831	+	1000.0	f1_balb.idr	promoter-TSS (NM_178811)	promoter-TSS (NM_178811)	-497.0	NM_201357	380752.0	Mm.273724	NM_201357	ENSMUSG00000036613	Eipr1	D12Ertd604e|Tssc1	EARP complex and GARP complex interacting protein 1	protein-coding	54.5	242.0	179.0	36.0	155.0	118.0
Merged-chr8-84986803-1	chr8	84986303	84987303	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-3792.0	NM_133255	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	12.0	12.0	17.5	6.5	9.0	13.0
Merged-chr6-123123321-4	chr6	123122842	123123842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011999)	promoter-TSS (NM_011999)	26.0	NM_001170333	26888.0	Mm.47384	NM_011999	ENSMUSG00000030148	Clec4a2	Clec4a|Clecsf6|DCIR|Dcir1	C-type lectin domain family 4, member a2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64191458-4	chr15	64190965	64191965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	121208.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	18.5	72.0	78.0	43.5	76.0	40.5
Merged-chr11-71285358-3	chr11	71284855	71285855	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027858)	promoter-TSS (NR_027858)	-123.0	NR_027858	627984.0	Mm.390378	NM_001039234	ENSMUSG00000092528	Nlrp1c-ps	Nalp1c|Nlrp1c	NLR family, pyrin domain containing 1C, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80260492-4	chr12	80259988	80260988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346669)	promoter-TSS (NM_001346669)	-107.0	NM_001346669	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-60784570-4	chr14	60784082	60785082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040642)	promoter-TSS (NR_040642)	16.0	NR_040642	70478.0	Mm.274650	NM_027436	ENSMUSG00000021993	Mipep	5730405E07Rik|MIP	mitochondrial intermediate peptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35119767-2	chr7	35119267	35120267	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001287515, exon 1 of 1)	exon (NM_001287515, exon 1 of 1)	474.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7725980-4	chr10	7725475	7726475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011835)	promoter-TSS (NM_011835)	-25.0	NM_011835	23924.0	Mm.28127	NM_011835	ENSMUSG00000019794	Katna1	-	katanin p60 (ATPase-containing) subunit A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-44070365-4	chr1	44069862	44070862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32079.0	NM_029368	75623.0	Mm.348017	NM_029368	ENSMUSG00000026049	Tex30	1700029F09Rik|3110030D08Rik	testis expressed 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-35297984-2	chr11	35297484	35298484	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011412, intron 4 of 35)	intron (NM_011412, intron 4 of 35)	176528.0	NM_011412	20564.0	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit guidance ligand 3	protein-coding	16.5	17.0	9.5	1.5	8.5	3.5
Merged-chr5-43784308-1	chr5	43783808	43784808	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-2159.0	NM_178729	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	2.5	0.0	0.5	0.0	0.5	8.0
Merged-chr17-46647062-2	chr17	46646562	46647562	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029091)	promoter-TSS (NM_029091)	833.0	NM_025302	27398.0	Mm.391007	NM_025302	ENSMUSG00000002767	Mrpl2	CGI-22|L2mt|MRP-L14|MRP-L2|Rpml14	mitochondrial ribosomal protein L2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21221136-2	chr9	21220636	21221636	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18196.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97379978-4	chr15	97379454	97380454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 5 of 5)	intron (NM_172293, intron 5 of 5)	-132667.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164074080-4	chr2	164073579	164074579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021420)	promoter-TSS (NM_021420)	-99.0	NM_021420	58231.0	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85670296-4	chr12	85669797	85670797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16423.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99074961-4	chr15	99074441	99075441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030159)	promoter-TSS (NM_030159)	-32.0	NM_001162506	78733.0	Mm.124905	NM_030159	ENSMUSG00000032783	Troap	AW476063|E130301L11Rik|tastin	trophinin associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5339484-3	chr6	5338965	5339965	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-41092.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	79.5	212.5	131.5	15.5	0.0	2.0
Merged-chr14-106765737-2	chr14	106765237	106766237	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-279217.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141210690-1	chr4	141210190	141211190	+	1000.0	f0_c57.idr	Intergenic	RSINE1|SINE|B4	-3266.0	NM_001081174	76166.0	Mm.271064	NM_001081174	ENSMUSG00000073733	Rsg1	6330545A04Rik|Gm723|b2b2804Clo|b2b2827Clo	REM2 and RAB-like small GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29528755-2	chr6	29528255	29529255	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252382)	promoter-TSS (NM_001252382)	-527.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102443788-4	chr12	102443248	102444248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3935.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	21.5	98.0	61.0	25.0	98.0	75.0
Merged-chr9-121276751-2	chr9	121276251	121277251	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177589, intron 1 of 36)	intron (NM_177589, intron 1 of 36)	421.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	0.0	1.5	0.0	3.0	1.5	0.0
Merged-chr2-129586292-4	chr2	129585795	129586795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6544.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	151.5	254.0	169.0	83.0	261.0	171.0
Merged-chr11-73018925-4	chr11	73018421	73019421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018883)	promoter-TSS (NM_018883)	-80.0	NR_152202	100043309.0	Mm.340872	NR_152202	ENSMUSG00000086943	4732414G09Rik	-	RIKEN cDNA 4732414G09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94521923-4	chr10	94521435	94522435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172051, intron 1 of 3)	intron (NM_172051, intron 1 of 3)	7078.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-19891890-4	chr5	19891394	19892394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 2 of 22)	L2a|LINE|L2	-15624.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79932041-1	chr15	79931541	79932541	+	1000.0	f1_c57bl6.idr	intron (NM_144811, intron 1 of 6)	intron (NM_144811, intron 1 of 6)	605.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	6.5	36.5	7.5	11.5	26.0	30.0
Merged-chr4-53270125-4	chr4	53269564	53270564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033139, intron 1 of 1)	RMER1B|Other|Other	168.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-51009172-4	chr9	51008679	51009679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178710)	promoter-TSS (NM_178710)	-106.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75908231-1	chr18	75907731	75908731	+	1000.0	f1_c57bl6.idr	intron (NM_145356, intron 2 of 4)	intron (NM_145356, intron 2 of 4)	88053.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	10.0	6.5	2.5	0.0	4.5	0.0
Merged-chr3-52103032-4	chr3	52102524	52103524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	CpG	1982.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-155093367-4	chr3	155092858	155093858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028938)	promoter-TSS (NM_028938)	20.0	NM_029330	75540.0	Mm.35218	NM_029330	ENSMUSG00000053870	Fpgt	1700016E03Rik	fucose-1-phosphate guanylyltransferase	protein-coding	0.0	4.0	6.0	0.0	3.5	3.5
Merged-chr12-65075538-4	chr12	65075052	65076052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178912)	promoter-TSS (NM_178912)	-54.0	NM_178912	104806.0	Mm.374847	NM_178912	ENSMUSG00000055884	Fancm	AI427100|C730036B14Rik|D12Ertd364e	Fanconi anemia, complementation group M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158156669-4	chr2	158156164	158157164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10272.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93084512-4	chr16	93084024	93085024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-258450.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	54.0	73.5	45.5	26.0	51.5	41.5
Merged-chr1-34839422-4	chr1	34838914	34839914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160236, intron 1 of 6)	intron (NM_001160236, intron 1 of 6)	3636.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60901669-4	chr2	60901215	60902215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-20277.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45452690-4	chr4	45452142	45453142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 3 of 5)	intron (NM_001033306, intron 3 of 5)	-43876.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	35.0	117.0	66.0	32.0	57.5	63.5
Merged-chr11-47171358-4	chr11	47170862	47171862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 3 of 7)	intron (NM_011891, intron 3 of 7)	207940.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	18.5	10.5	9.5	5.5	17.0	11.0
Merged-chr14-21751391-4	chr14	21750869	21751869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359953)	promoter-TSS (NM_001359953)	-183.0	NM_001359953	67630.0	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	64.0	138.0	112.5	43.5	130.0	78.5
Merged-chr1-51529851-4	chr1	51529357	51530357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151621, intron 3 of 3)	intron (NR_151621, intron 3 of 3)	-51458.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-96867487-2	chr5	96866987	96867987	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	-53785.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	13.5	21.0	12.0	29.0	12.0	15.0
Merged-chr8-79143968-4	chr8	79143463	79144463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 8 of 14)	intron (NM_001294279, intron 8 of 14)	104620.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75024983-4	chr14	75024481	75025481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198642, intron 1 of 13)	intron (NM_198642, intron 1 of 13)	8954.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-73006596-2	chr11	73006096	73007096	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008771, intron 1 of 11)	intron (NM_008771, intron 1 of 11)	7451.0	NM_008771	18436.0	Mm.25722	NM_008771	ENSMUSG00000020787	P2rx1	AI323649|BB122383|P2x|Pdcd3|RP-2	purinergic receptor P2X, ligand-gated ion channel, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-97676358-4	chr1	97675865	97676865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-14347.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28981931-4	chr7	28981429	28982429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285943)	promoter-TSS (NM_001285943)	-41.0	NM_001285942	73830.0	Mm.29714	NM_028659	ENSMUSG00000053565	Eif3k	1200009C21Rik|Eif3s12	eukaryotic translation initiation factor 3, subunit K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-5020391-4	chr7	5019880	5020880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290426)	promoter-TSS (NM_001290426)	4.0	NM_001033383	319748.0	Mm.86607	NM_001033383	ENSMUSG00000074405	Zfp865	6430526N21Rik|Znf865	zinc finger protein 865	protein-coding	72.5	115.0	102.5	44.5	137.0	100.0
Merged-chr8-128686249-4	chr8	128685762	128686762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010578, intron 1 of 15)	CpG	608.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98655839-4	chr7	98655345	98656345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172280, intron 1 of 19)	CpG	724.0	NM_172280	233545.0	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34297465-4	chr10	34296967	34297967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030203)	promoter-TSS (NM_030203)	46.0	NM_030203	72480.0	Mm.21485	NM_030203	ENSMUSG00000039485	Tspyl4	2610102M01Rik|B230210I21Rik|D10Bwg0791e	TSPY-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-48716418-4	chr2	48715909	48716909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97700.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86167551-4	chr17	86167054	86168054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011104)	promoter-TSS (NM_011104)	-231.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	25.0	68.0	51.0	21.0	66.0	78.0
Merged-chr18-57777413-2	chr18	57776913	57777913	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152225, intron 2 of 2)	intron (NR_152225, intron 2 of 2)	2582.0	NR_152224	100503033.0	Mm.381112	NR_152224		Gm19519	-	predicted gene, 19519	ncRNA	9.0	7.0	1.5	4.0	2.0	5.5
Merged-chr8-26744619-4	chr8	26744122	26745122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79801.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0.0	0.5	8.0	3.0	6.0	6.5
Merged-chr17-26571594-4	chr17	26571098	26572098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	L1MD3|LINE|L1	10086.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131211027-4	chr2	131210519	131211519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110992, intron 1 of 1)	intron (NR_110992, intron 1 of 1)	659.0	NR_110992	69596.0	Mm.2937	NM_027129	ENSMUSG00000068264	Ap5s1	0610038L13Rik|2310035K24Rik|AW060727|sigma5	adaptor-related protein 5 complex, sigma 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170939470-4	chr1	170938989	170939989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11906.0	NM_001160215	98752.0	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54970985-4	chr18	54970501	54971501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	19179.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92667040-4	chr5	92666518	92667518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360020, intron 3 of 9)	intron (NM_001360020, intron 3 of 9)	8109.0	NM_001360018	320696.0	Mm.209991	NM_177230	ENSMUSG00000050050	Ccdc158	4932413O14Rik	coiled-coil domain containing 158	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24977263-4	chr2	24976772	24977772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146251, intron 1 of 34)	intron (NM_146251, intron 1 of 34)	1239.0	NM_146251	241274.0	Mm.389243	NM_146251	ENSMUSG00000036833	Pnpla7	BC027342|E430013P11Rik|Nre	patatin-like phospholipase domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62510305-2	chr10	62509805	62510805	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 1 of 3)	B1F2|SINE|Alu	-2548.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51216167-2	chr3	51215667	51216667	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-8280.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45510500-4	chr7	45510025	45511025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163662)	promoter-TSS (NM_001163662)	-117.0	NM_001163662	18220.0	Mm.258923	NM_008749	ENSMUSG00000030824	Nucb1	B230337F23Rik|C77483|Calnuc|MTEST82|Nucb	nucleobindin 1	protein-coding	31.0	97.0	66.0	43.0	68.5	87.5
Merged-chr16-25798048-2	chr16	25797548	25798548	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127259, intron 3 of 13)	intron (NM_001127259, intron 3 of 13)	-3868.0	NM_001127263	22061.0	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-94979131-4	chr4	94978629	94979629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177239)	promoter-TSS (NM_177239)	-29.0	NM_177239	320713.0	Mm.208868	NM_177239	ENSMUSG00000062627	Mysm1	C130067A03Rik|C530050H10Rik	myb-like, SWIRM and MPN domains 1	protein-coding	40.5	72.0	63.5	17.5	79.0	65.5
Merged-chr1-89742591-4	chr1	89742105	89743105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 10 of 16)	ORR1E|LTR|ERVL-MaLR	-58713.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11478601-4	chr8	11478090	11479090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011227)	promoter-TSS (NM_011227)	-91.0	NM_011227	19332.0	Mm.37632	NM_011227	ENSMUSG00000031504	Rab20	AA536966|D8Ertd350e	RAB20, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-147042781-4	chr6	147042271	147043271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145573)	promoter-TSS (NM_145573)	1.0	NM_145573	232536.0	Mm.46656	NM_145573	ENSMUSG00000040112	Mrps35	MDSO23|MRP-S28|MRPS28	mitochondrial ribosomal protein S35	protein-coding	19.0	47.0	37.5	22.5	36.5	37.0
Merged-chr10-78137330-4	chr10	78136826	78137826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32442.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4232346-4	chr19	4231814	4232814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132280)	promoter-TSS (NR_132280)	-101.0	NR_132280	69745.0	Mm.32518	NM_027196	ENSMUSG00000024854	Pold4	2410012M21Rik|AI463381|AW060307|Polds|p12	polymerase (DNA-directed), delta 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-18054771-2	chr3	18054271	18055271	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021560, exon 1 of 1)	5' UTR (NM_021560, exon 1 of 1)	446.0	NM_021560	59058.0	Mm.149938	NM_021560	ENSMUSG00000025128	Bhlhe22	Beta3|Beta3a|Bhlhb5	basic helix-loop-helix family, member e22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106319056-6	chr11	106318580	106319580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133199, exon 24 of 24)	3' UTR (NM_133199, exon 24 of 24)	-4518.0	NM_001313939	15985.0	Mm.2987	NM_008339	ENSMUSG00000040592	Cd79b	B29|Ig-beta|Igb|Igbeta	CD79B antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-8214451-4	chr14	8213946	8214946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305936)	promoter-TSS (NM_001305936)	-56.0	NM_001305936	71393.0	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148448454-4	chr4	148447926	148448926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020009)	promoter-TSS (NM_020009)	-156.0	NM_020009	56717.0	Mm.21158	NM_020009	ENSMUSG00000028991	Mtor	2610315D21Rik|AI327068|FRAP|FRAP2|Frap1|RAFT1|RAPT1|flat	mechanistic target of rapamycin kinase	protein-coding	61.0	162.5	105.5	38.5	76.0	87.5
Merged-chr1-151118707-4	chr1	151118197	151119197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-19337.0	NR_038011	402734.0	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24549930-4	chr17	24549410	24550410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013630)	promoter-TSS (NM_013630)	-40.0	NM_013630	18763.0	Mm.30435	NM_013630	ENSMUSG00000032855	Pkd1	PC1|mFLJ00285	polycystin 1, transient receptor poteintial channel interacting	protein-coding	67.0	219.5	149.0	81.5	147.5	107.5
Merged-chr7-28312106-4	chr7	28311626	28312626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025616)	promoter-TSS (NM_025616)	-80.0	NM_025616	66525.0	Mm.167913	NM_025616	ENSMUSG00000003438	Timm50	2810403L02Rik|AU015082|TIM50L	translocase of inner mitochondrial membrane 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69447426-4	chr12	69446943	69447943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28107.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	132.5	319.5	244.5	173.0	325.0	263.0
Merged-chr1-13660001-4	chr1	13659511	13660511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145381, intron 1 of 6)	B1F1|SINE|Alu	498.0	NM_145381	212442.0	Mm.89572	NM_145381	ENSMUSG00000025937	Lactb2	Cgi-83|E430032H21Rik	lactamase, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25279954-2	chr15	25279454	25280454	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	133810.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-84967229-4	chr16	84966732	84967732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 13 of 15)	intron (NM_001198825, intron 13 of 15)	-4979.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-65407320-4	chr2	65406810	65407810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42910.0	NR_105755	102466151.0		NR_105755	ENSMUSG00000099184	Mir6337	Gm27877|mmu-mir-6337	microRNA 6337	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16097584-1	chr7	16097084	16098084	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_025898)	promoter-TSS (NM_025898)	-996.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	37.0	26.0	34.5	21.0	33.5	30.0
Merged-chr15-95795369-4	chr15	95794850	95795850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	4507.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60727285-4	chr11	60726798	60727798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302207)	promoter-TSS (NM_001302207)	-35.0	NM_001302207	14248.0	Mm.339755	NM_022009	ENSMUSG00000002812	Flii	3632430F08Rik|Fliih	flightless I actin binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118648202-2	chr9	118647702	118648702	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	41493.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	18.5	24.5	30.0	19.5	18.5	39.5
Merged-chr1-59237287-4	chr1	59236802	59237802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028717)	promoter-TSS (NM_028717)	-71.0	NM_028717	74018.0	Mm.272078	NM_028717	ENSMUSG00000026024	Als2	3222402C23Rik|9430073A21Rik|Als2cr6|Alsin|mKIAA1563	alsin Rho guanine nucleotide exchange factor	protein-coding	64.0	97.0	81.0	35.5	125.0	87.0
Merged-chr12-102396189-2	chr12	102395689	102396689	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 11 of 13)	intron (NM_011175, intron 11 of 13)	43624.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161463921-3	chr1	161463416	161464416	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30741.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	18.5	39.5	11.5	7.5	48.5	30.5
Merged-chr16-21701994-3	chr16	21701498	21702498	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-7333.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-73812797-4	chr18	73812288	73813288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145494, intron 1 of 15)	B4A|SINE|B4	2604.0	NM_145494	107029.0	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	36.5	29.0	54.5	24.0	43.5	48.0
Merged-chr6-47595111-4	chr6	47594613	47595613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146689)	promoter-TSS (NM_001146689)	-83.0	NM_007971	14056.0	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28732912-4	chr7	28732413	28733413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310687, intron 3 of 6)	intron (NM_001310687, intron 3 of 6)	7908.0	NM_001360254	24030.0	Mm.358650	NM_011885	ENSMUSG00000045948	Mrps12	AI327385|Rpms12|rps12	mitochondrial ribosomal protein S12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-47105978-4	chr13	47105481	47106481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025900, intron 1 of 10)	CpG	240.0	NM_025900	110052.0	Mm.131150	NM_025900	ENSMUSG00000021377	Dek	1810019E15Rik|D13H6S231E	DEK oncogene (DNA binding)	protein-coding	116.0	285.5	223.0	92.0	378.0	203.0
Merged-chr5-137778830-4	chr5	137778275	137779275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356989)	promoter-TSS (NM_001356989)	-129.0	NM_001356989	69871.0	Mm.276058	NM_027242	ENSMUSG00000029725	Ppp1r35	2010007H12Rik|2010011D20Rik|AL024004	protein phosphatase 1, regulatory subunit 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-13249125-4	chr12	13248579	13249579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134040)	promoter-TSS (NM_134040)	95.0	NM_134040	104721.0	Mm.251255	NM_134040	ENSMUSG00000037149	Ddx1	AA409185|DBP-RB	DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	protein-coding	37.0	52.5	36.0	14.5	31.0	32.5
Merged-chr17-71096706-4	chr17	71096204	71097204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083934, intron 21 of 36)	intron (NM_001083934, intron 21 of 36)	77147.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	8.5	25.5	26.0	3.0	26.0	3.0
Merged-chr14-18331806-4	chr14	18331311	18332311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009455)	promoter-TSS (NM_009455)	33.0	NM_009455	22194.0	Mm.4429	NM_009455	ENSMUSG00000021774	Ube2e1	UbcM3|Ubce5|ubcM2	ubiquitin-conjugating enzyme E2E 1	protein-coding	0.0	11.5	1.0	0.0	0.0	0.0
Merged-chr2-167932798-3	chr2	167932298	167933298	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	471.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30715643-4	chr14	30715143	30716143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166532)	promoter-TSS (NM_001166532)	28.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70468092-4	chr11	70467589	70468589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8105.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124813717-4	chr6	124813202	124814202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009415, intron 1 of 6)	intron (NM_009415, intron 1 of 6)	594.0	NM_009415	21991.0	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|TIM|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4368431-4	chr18	4367934	4368934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040328, intron 3 of 3)	ORR1E|LTR|ERVL-MaLR	-7158.0	NM_001361008	67440.0	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-117534072-4	chr12	117533552	117534552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 3 of 27)	CpG	17573.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	1.0	2.5	4.5	1.0	0.0	6.0
Merged-chr10-79780275-4	chr10	79779753	79780753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031380, intron 3 of 4)	intron (NM_031380, intron 3 of 4)	2979.0	NM_031380	83554.0	Mm.251710	NM_031380	ENSMUSG00000020325	Fstl3	E030038F23Rik|Flrg	follistatin-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19271812-4	chr7	19271272	19272272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282021)	promoter-TSS (NM_001282021)	82.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71265828-3	chr17	71265341	71266341	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357338, intron 4 of 7)	intron (NM_001357338, intron 4 of 7)	45170.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	5.0	15.0	13.5	52.5	181.5	129.0
Merged-chr5-67815622-4	chr5	67815125	67816125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	31806.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20492685-4	chr9	20492187	20493187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110309)	promoter-TSS (NM_001110309)	59.0	NM_146221	235028.0	Mm.297660	NM_146221	ENSMUSG00000059475	Zfp426	2900057C04Rik|KRAB1|Zfo61|Zfp68-rs1|Znf426|mKIAA4237	zinc finger protein 426	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62003042-4	chr15	62002528	62003528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17687.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4558728-4	chr16	4558232	4559232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031182, intron 1 of 6)	CpG	988.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36608515-4	chr15	36608022	36609022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008774, exon 1 of 15)	5' UTR (NM_008774, exon 1 of 15)	451.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-3270649-4	chr15	3270144	3271144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009155)	promoter-TSS (NM_009155)	-123.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165708052-4	chr1	165707530	165708530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178593)	promoter-TSS (NM_178593)	64.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127026908-2	chr7	127026408	127027408	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010772)	promoter-TSS (NM_010772)	-429.0	NM_010772	17188.0	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-23783659-4	chr5	23783160	23784160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289780)	promoter-TSS (NM_001289780)	51.0	NM_001289780	78697.0	Mm.58660	NM_178403	ENSMUSG00000057541	Pus7	C330017I15Rik	pseudouridylate synthase 7	protein-coding	4.0	24.0	16.5	6.0	9.5	12.0
Merged-chr7-25680265-4	chr7	25679747	25680747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362154)	promoter-TSS (NM_001362154)	-533.0	NM_001362154	232987.0	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141620513-2	chr4	141620013	141621013	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001013780, exon 5 of 5)	exon (NM_001013780, exon 5 of 5)	-1880.0	NR_151462	213989.0	Mm.34891	NM_145987	ENSMUSG00000043085	Tmem82	-	transmembrane protein 82	protein-coding	2.0	1.0	8.5	2.0	1.5	1.0
Merged-chr19-5946264-4	chr19	5945759	5946759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 13 of 17)	intron (NM_001164057, intron 13 of 17)	17947.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44360103-4	chr7	44359622	44360622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027049)	TTS (NM_027049)	14908.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85219352-4	chr12	85218826	85219826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145445)	promoter-TSS (NM_145445)	-155.0	NM_145445	217715.0	Mm.29041	NM_145445	ENSMUSG00000004788	Eif2b2	EIF-2Bbeta|EIF2B	eukaryotic translation initiation factor 2B, subunit 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29180691-4	chr7	29180231	29181231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026545)	promoter-TSS (NM_026545)	-58.0	NM_026545	57296.0	Mm.273152	NM_026545	ENSMUSG00000030591	Psmd8	6720456J22Rik|AA407360|AL033291|AL033322|AL033323|C76433	proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	protein-coding	63.0	155.0	125.5	55.5	154.0	102.5
Merged-chr14-55554872-2	chr14	55554372	55555372	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5157.0	NR_037572	28199.0	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119426618-4	chr8	119426105	119427105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10557.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121636397-4	chr9	121635881	121636881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026915, intron 1 of 5)	intron (NM_026915, intron 1 of 5)	5212.0	NM_026915	69032.0	Mm.33351	NM_026915	ENSMUSG00000032530	Lyzl4	1810009N24Rik|AI504271|Lyc4|Lyza	lysozyme-like 4	protein-coding	1.5	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132843582-2	chr2	132843082	132844082	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025676, exon 18 of 18)	3' UTR (NM_025676, exon 18 of 18)	-3084.0	NM_001024385	66586.0	Mm.357342	NM_025646	ENSMUSG00000027357	Crls1	0610009I22Rik|4930557M15Rik|5730490M08Rik	cardiolipin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126897520-4	chr7	126897006	126898006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026827, intron 1 of 5)	intron (NM_026827, intron 1 of 5)	772.0	NM_026827	68742.0	Mm.248646	NM_026827	ENSMUSG00000060538	Tmem219	1110032O16Rik|2900045G02Rik|IGFBP-3R	transmembrane protein 219	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47648489-2	chr6	47647989	47648989	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	6605.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99535652-4	chr7	99535128	99536128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177231, exon 1 of 16)	5' UTR (NM_177231, exon 1 of 16)	142.0	NM_177231	109689.0	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	3.5	10.0	9.0	9.5	12.0	10.0
Merged-chr14-102866651-4	chr14	102866140	102867140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	115992.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51315722-4	chr13	51315229	51316229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92889.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-140572585-4	chr4	140572096	140573096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001112723, intron 14 of 26)	intron (NM_001112723, intron 14 of 26)	76160.0	NM_001112723	72754.0	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	4.5	5.0	5.0	1.5	4.5	2.5
Merged-chr15-81694147-4	chr15	81693655	81694655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001164320, exon 3 of 6)	exon (NM_001164320, exon 3 of 6)	3132.0	NM_001164320	214685.0	Mm.393287	NM_001164320	ENSMUSG00000063765	Chadl	AY100452|D930017K21Rik	chondroadherin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148554893-4	chr5	148554378	148555378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2090.0	NM_001359199	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	31.5	84.5	45.0	12.5	35.0	16.5
Merged-chr5-120503621-4	chr5	120503135	120504135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023625)	promoter-TSS (NM_023625)	-12.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25092695-8	chr12	25092206	25093206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3386.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	17.5	22.0	18.0	11.5	29.0	31.5
Merged-chr16-91485086-4	chr16	91484585	91485585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010508)	promoter-TSS (NM_010508)	-130.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58713200-4	chr1	58712688	58713688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009805)	promoter-TSS (NM_009805)	-98.0	NM_207653	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128711605-4	chr4	128711090	128712090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 6 of 14)	intron (NM_018774, intron 6 of 14)	-15981.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79635238-4	chr2	79634746	79635746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080558)	promoter-TSS (NM_080558)	-179.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	56.0	113.5	80.5	79.0	129.0	78.5
Merged-chr8-94666665-4	chr8	94666172	94667172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024191)	promoter-TSS (NM_024191)	72.0	NM_024191	107566.0	Mm.393247	NM_024191	ENSMUSG00000031776	Arl2bp	1700010P10Rik|1700027H16Rik|6330544B05Rik|AI482273|AI849834|BART|Bart1	ADP-ribosylation factor-like 2 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125008950-4	chr6	125008480	125009480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175557)	promoter-TSS (NM_175557)	-258.0	NM_001252083	269800.0	Mm.108677	NM_175557	ENSMUSG00000038346	Zfp384	BB163993|C130073D16Rik|Ciz|NP|Nmp4	zinc finger protein 384	protein-coding	51.0	134.5	133.5	50.5	139.5	140.5
Merged-chr5-31180022-4	chr5	31179488	31180488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027901, exon 1 of 19)	5' UTR (NM_027901, exon 1 of 19)	156.0	NM_027901	71752.0	Mm.271923	NM_027901	ENSMUSG00000106864	Gtf3c2	1300004C11Rik|2610510G03Rik|AI225816|AU041069|TFIIIC110|mKIAA0011	general transcription factor IIIC, polypeptide 2, beta	protein-coding	30.5	77.0	59.0	28.0	45.0	54.5
Merged-chr9-64242504-4	chr9	64242008	64243008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008927, intron 1 of 10)	MTC|LTR|ERVL-MaLR	7307.0	NM_033607	93841.0	Mm.390180	NM_033607	ENSMUSG00000035337	Uchl4	-	ubiquitin carboxyl-terminal esterase L4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-48545984-4	chr13	48545483	48546483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7711.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-3611167-4	chr13	3610660	3611660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134063)	promoter-TSS (NM_134063)	-52.0	NM_001360838	105203.0	Mm.221609	NM_134063	ENSMUSG00000033799	Fam208b	AI645998|Pap20|mKIAA2006	family with sequence similarity 208, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107944987-4	chr13	107944461	107945461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-54897.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	17.5	19.5	21.5	9.5	24.0	22.5
Merged-chr12-112517161-4	chr12	112516648	112517648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-5988.0	NM_178915	104885.0	Mm.37751	NM_178915	ENSMUSG00000054013	Tmem179	AI839735	transmembrane protein 179	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105599023-4	chr5	105598514	105599514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	79543.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-92886391-4	chr7	92885875	92886875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028243, intron 1 of 8)	intron (NM_028243, intron 1 of 8)	11122.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-4612461-2	chr10	4611961	4612961	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007956, intron 1 of 8)	intron (NM_007956, intron 1 of 8)	472.0	NM_007956	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-53313681-4	chr1	53313178	53314178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104361)	promoter-TSS (NR_104361)	54.0	NR_104360	72085.0	Mm.482256	NM_028091	ENSMUSG00000026096	Osgepl1	2610001M19Rik|AA416452	O-sialoglycoprotein endopeptidase-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80741251-2	chr7	80740752	80741752	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 18 of 37)	intron (NM_016721, intron 18 of 37)	-52375.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	2.5	7.0	4.5	1.0	9.0	5.5
Merged-chr15-89128650-4	chr15	89128158	89129158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028449)	promoter-TSS (NR_028449)	42.0	NR_028448	170787.0	Mm.203954	NM_199198	ENSMUSG00000062906	Hdac10	AW548891|Hd10	histone deacetylase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-16013341-4	chr4	16012849	16013849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355616, intron 1 of 5)	intron (NM_001355616, intron 1 of 5)	489.0	NM_001355615	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61114370-4	chr10	61113871	61114871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009163, intron 4 of 14)	intron (NM_009163, intron 4 of 14)	25040.0	NM_025273	13180.0	Mm.39473	NM_025273	ENSMUSG00000020098	Pcbd1	Dcoh|Pcbd|Pcd|Phs	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-40956027-4	chr15	40955509	40956509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356998, intron 4 of 6)	intron (NM_001356998, intron 4 of 6)	-217692.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-74390894-4	chr13	74390394	74391394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14328.0	NM_001081680	238722.0	Mm.461254	NM_001081680	ENSMUSG00000069184	Zfp72	Zfp74	zinc finger protein 72	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61584845-4	chr8	61584353	61585353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	L2a|LINE|L2	6316.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	12.5	28.0	9.0	10.0	26.0	23.0
Merged-chr13-52031620-4	chr13	52031063	52032063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65178.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95844046-4	chr10	95843554	95844554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12BD_Mm|LTR|ERVK	-96609.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87019654-4	chr11	87019139	87020139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25877.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117120515-4	chr4	117119988	117120988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_024078, exon 7 of 7)	non-coding (NR_024078, exon 7 of 7)	5237.0	NR_024078	78611.0	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	72.5	196.0	138.5	151.5	326.5	301.5
Merged-chr18-69593358-4	chr18	69592847	69593847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	247187.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-57955653-4	chr4	57955148	57956148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011660, intron 1 of 4)	CpG	763.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-144979327-2	chr4	144978827	144979827	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 68 of 69)	intron (NM_001276465, intron 68 of 69)	86190.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-69789614-4	chr2	69789126	69790126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028521)	promoter-TSS (NM_028521)	-111.0	NM_028521	73373.0	Mm.9621	NM_028521	ENSMUSG00000027088	Phospho2	1700048E23Rik|AI661517|AU021728|AV006103|Phos2	phosphatase, orphan 2	protein-coding	69.5	220.5	170.0	69.0	248.0	168.5
Merged-chr18-67724578-4	chr18	67723991	67724991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001127177, exon 1 of 9)	exon (NM_001127177, exon 1 of 9)	130.0	NM_001127177	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	87.0	336.5	213.5	137.5	322.5	230.0
Merged-chr3-129725255-4	chr3	129724766	129725766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310737)	promoter-TSS (NM_001310737)	-180.0	NM_001329594	13645.0	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127143518-4	chr2	127143046	127144046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163527)	promoter-TSS (NM_001163527)	-89.0	NM_001355634	73338.0	Mm.57559	NM_001163527	ENSMUSG00000074825	Itpripl1	1700041B20Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 1	protein-coding	38.5	27.5	38.5	33.0	42.5	49.0
Merged-chr2-104712252-4	chr2	104711737	104712737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177190)	promoter-TSS (NM_177190)	-75.0	NM_177190	320554.0	Mm.249065	NM_177190	ENSMUSG00000027175	Tcp11l1	C130096D04Rik	t-complex 11 like 1	protein-coding	8.5	21.0	9.0	9.5	27.5	8.0
Merged-chr6-86570965-4	chr6	86570479	86571479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43578.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-105293439-4	chr13	105292949	105293949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027934)	promoter-TSS (NM_027934)	-435.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	51.0	76.5	55.0	49.0	80.5	55.0
Merged-chr2-34768732-2	chr2	34768232	34769232	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-3358.0	NM_001163434	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-51951678-4	chr15	51951164	51952164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	40096.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34481394-4	chr6	34480893	34481893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007563, intron 1 of 2)	intron (NM_007563, intron 1 of 2)	5037.0	NM_007563	12183.0	Mm.282863	NM_007563	ENSMUSG00000038871	Bpgm	AI323730|AL022789|C86192	2,3-bisphosphoglycerate mutase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-101084598-2	chr12	101084098	101085098	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_211355)	promoter-TSS (NM_211355)	-896.0	NM_001160214	68734.0	Mm.87077	NM_211355	ENSMUSG00000041846	Ppp4r3a	1110034C04Rik|BC064465|Smek1|mKIAA2010	protein phosphatase 4 regulatory subunit 3A	protein-coding	14.0	31.5	15.5	14.5	28.5	16.5
Merged-chr5-138441506-4	chr5	138441041	138442041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028130)	promoter-TSS (NM_028130)	65.0	NM_028130	72154.0	Mm.20263	NM_028130	ENSMUSG00000036898	Zfp157	2610020C11Rik|A630094N24Rik|AI327407|Roma|mszf12|mszf23-1	zinc finger protein 157	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126582733-4	chr8	126582222	126583222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10714.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	1.5	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67645334-4	chr7	67644829	67645829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175124)	promoter-TSS (NM_175124)	-93.0	NR_028143	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	86.0	132.0	114.0	76.0	208.5	85.5
Merged-chr11-86756944-4	chr11	86756375	86757375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	692.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31853854-4	chr17	31853353	31854353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010831, intron 3 of 13)	intron (NM_010831, intron 3 of 13)	1951.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	16.5	68.5	32.0	7.0	40.5	25.0
Merged-chr15-100039117-2	chr15	100038617	100039617	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 1 of 37)	CpG	453.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36958585-4	chr17	36958103	36959103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029602)	promoter-TSS (NM_029602)	11.0	NM_029602	76416.0	Mm.26684	NM_029602	ENSMUSG00000036214	Znrd1as	1700022C21Rik|AI746295|Znrd1-as	zinc ribbon domain containing 1, antisense	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50926724-4	chr14	50926237	50927237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310505)	TTS (NM_001310505)	1788.0	NM_009687	11792.0	Mm.203	NM_009687	ENSMUSG00000035960	Apex1	APE|Apex|HAP1|Ref-1	apurinic/apyrimidinic endonuclease 1	protein-coding	5.5	21.0	15.5	8.5	40.5	15.0
Merged-chr8-122430083-1	chr8	122429583	122430583	+	1000.0	f0_c57.idr	intron (NM_001301284, intron 1 of 4)	intron (NM_001301284, intron 1 of 4)	2857.0	NM_001301284	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-118155384-4	chr5	118154777	118155777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172721, exon 1 of 11)	exon (NM_172721, exon 1 of 11)	181.0	NM_172721	231672.0	Mm.221769	NM_172721	ENSMUSG00000032867	Fbxw8	4930438M06Rik|FBW6|FBW8|FBXO29|Fbx29	F-box and WD-40 domain protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102705267-4	chr12	102704791	102705791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172584)	promoter-TSS (NM_172584)	-422.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70795700-4	chr11	70795201	70796201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045526, intron 3 of 4)	MTB|LTR|ERVL-MaLR	16860.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	5.5	6.0	12.0	4.5	2.5	13.5
Merged-chr13-64107824-3	chr13	64107317	64108317	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001321, intron 7 of 11)	intron (NM_001001321, intron 7 of 11)	-18616.0	NM_008291	15487.0	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	9.5	31.5	35.0	3.5	15.0	0.5
Merged-chr19-3083602-2	chr19	3083102	3084102	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	114101.0	NR_045304	70011.0	Mm.393871	NR_045304	ENSMUSG00000100969	1700030N03Rik	1700087C08Rik	RIKEN cDNA 1700030N03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101191699-4	chr15	101191183	101192183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007395, intron 1 of 8)	intron (NM_007395, intron 1 of 8)	-2186.0	NR_105927	102466774.0		NR_105927	ENSMUSG00000106563	Mir6962	mmu-mir-6962	microRNA 6962	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149763530-4	chr4	149763030	149764030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027460, intron 1 of 6)	URR1B|DNA|hAT-Charlie	10737.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	12.0	24.0	28.5	8.0	17.0	7.0
Merged-chr7-28379246-5	chr7	28378730	28379730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011756)	promoter-TSS (NM_011756)	-2.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-7136755-4	chr7	7136269	7137269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029584)	promoter-TSS (NM_029584)	-14.0	NM_029584	76373.0	Mm.159732	NM_029584	ENSMUSG00000063535	Zfp773	2810409K11Rik	zinc finger protein 773	protein-coding	0.0	2.0	5.0	0.0	8.5	3.0
Merged-chr17-23726888-3	chr17	23726385	23727385	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023058, intron 1 of 7)	intron (NM_023058, intron 1 of 7)	549.0	NM_023058	268930.0	Mm.182193	NM_023058	ENSMUSG00000023908	Pkmyt1	6230424P17|AW209059|Myt1	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	10.5	35.5	13.5	10.5	10.5	6.5
Merged-chr18-78140476-2	chr18	78139976	78140976	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171011, intron 1 of 8)	intron (NM_001171011, intron 1 of 8)	1643.0	NM_001171011	108052.0	Mm.33832	NM_028122	ENSMUSG00000059336	Slc14a1	2610507K20Rik|3021401A05Rik|UT-B|Utb1	solute carrier family 14 (urea transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95808074-4	chr15	95807567	95808567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	17224.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69157636-4	chr12	69157126	69158126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009093)	TTS (NM_009093)	1560.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	30.0	90.5	62.5	26.5	128.5	57.5
Merged-chr15-57773384-2	chr15	57772884	57773884	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 2 of 3)	intron (NM_199449, intron 2 of 3)	78717.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104571185-4	chr8	104570673	104571673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20295.0	NM_001024606	382051.0	Mm.290750	NM_001024606	ENSMUSG00000048371	Pdp2	4833426J09Rik|Gm1705|mKIAA1348	pyruvate dehyrogenase phosphatase catalytic subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30711807-2	chr2	30711307	30712307	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9403.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16313041-6	chr7	16312524	16313524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133234, intron 2 of 3)	intron (NM_133234, intron 2 of 3)	3441.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61680944-2	chr14	61680444	61681444	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	1429.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75781895-2	chr2	75781395	75782395	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50282.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0.0	1.5	6.0	0.0	1.0	2.5
Merged-chr3-109129920-4	chr3	109129459	109130459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172685, intron 1 of 9)	Lx8|LINE|L1	6810.0	NM_172685	229731.0	Mm.33574	NM_172685	ENSMUSG00000040322	Slc25a24	2610016M12Rik	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-51938142-4	chr12	51937645	51938645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177171, exon 13 of 36)	exon (NM_177171, exon 13 of 36)	33176.0	NM_177171	320487.0	Mm.131941	NM_177171	ENSMUSG00000035181	Heatr5a	C230081H03Rik|D930036F22Rik|mKIAA1316	HEAT repeat containing 5A	protein-coding	21.0	60.5	38.0	18.0	65.0	41.0
Merged-chr10-127622282-1	chr10	127621782	127622782	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-1134.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	43.5	85.0	56.0	36.0	72.0	48.5
Merged-chr14-7976346-4	chr14	7975850	7976850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007870, intron 5 of 7)	intron (NM_007870, intron 5 of 7)	17832.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117126796-2	chr4	117126333	117127333	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175030)	promoter-TSS (NM_175030)	20.0	NM_175030	242646.0	Mm.358914	NM_175030	ENSMUSG00000047671	Tctex1d4	4833401D15Rik	Tctex1 domain containing 4	protein-coding	208.5	424.0	279.0	227.0	352.0	280.5
Merged-chr6-34939614-2	chr6	34939114	34940114	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009292)	TTS (NM_009292)	18666.0	NM_009292	20899.0	Mm.5171	NM_009292	ENSMUSG00000029848	Stra8	-	stimulated by retinoic acid gene 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-101763234-4	chr2	101762746	101763746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 3 of 8)	intron (NM_001355625, intron 3 of 8)	34461.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	11.0	55.0	38.0	10.0	23.0	26.0
Merged-chr3-108299356-2	chr3	108298856	108299856	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019972, intron 1 of 19)	intron (NM_019972, intron 1 of 19)	15292.0	NM_019972	20661.0	Mm.157119	NM_019972	ENSMUSG00000068747	Sort1	2900053A11Rik|AI852375|Ntr3|Ntsr3	sortilin 1	protein-coding	18.5	0.5	1.0	5.0	0.0	8.0
Merged-chr1-106540405-3	chr1	106539904	106540904	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009741, exon 2 of 2)	3' UTR (NM_009741, exon 2 of 2)	6227.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7346107-4	chr9	7345697	7346697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001320077, intron 1 of 10)	intron (NM_001320077, intron 1 of 10)	-1177.0	NM_001320076	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115037885-4	chr6	115037379	115038379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026894)	promoter-TSS (NM_026894)	-5.0	NM_026894	68971.0	Mm.24937	NM_026894	ENSMUSG00000030316	Tamm41	1500001M20Rik|TAM41	TAM41 mitochondrial translocator assembly and maintenance homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83299006-4	chr11	83298508	83299508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134025)	promoter-TSS (NM_134025)	-31.0	NM_134025	103737.0	Mm.102205	NM_134025	ENSMUSG00000018733	Pex12	AI451906	peroxisomal biogenesis factor 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-103411999-3	chr13	103411498	103412498	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77506.0	NM_175171	328329.0	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding	0.0	10.5	0.0	18.5	14.0	7.5
Merged-chr2-129592716-4	chr2	129592219	129593219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291021)	promoter-TSS (NM_001291021)	-120.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	28.5	62.5	58.0	47.0	121.5	61.0
Merged-chr1-128014141-4	chr1	128013630	128014630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 8 of 20)	B4|SINE|B4	88341.0	NM_027678	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5211046-4	chr17	5210550	5211550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	207717.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44659716-4	chr10	44659201	44660201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-200953.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73458869-3	chr13	73458356	73459356	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8527.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80677966-4	chr10	80677478	80678478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1685.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-140844234-4	chr2	140843737	140844737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 4 of 18)	intron (NM_001013802, intron 4 of 18)	-172761.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100493702-3	chr7	100493221	100494221	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011671, intron 1 of 7)	intron (NM_011671, intron 1 of 7)	363.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	19.0	48.0	44.5	38.0	70.0	78.5
Merged-chr1-152901571-2	chr1	152901071	152902071	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160257, intron 1 of 23)	intron (NM_001160257, intron 1 of 23)	1074.0	NM_001359257	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75284315-4	chr14	75283809	75284809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026083)	promoter-TSS (NM_026083)	-57.0	NM_001359875	67302.0	Mm.74704	NM_026083	ENSMUSG00000022000	Zc3h13	2600010B19Rik|3110050K21Rik|4930570G11Rik|C87618	zinc finger CCCH type containing 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182504430-4	chr1	182503934	182504934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009794, intron 2 of 20)	intron (NM_009794, intron 2 of 20)	13176.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-49486163-4	chr9	49485669	49486669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172770)	promoter-TSS (NM_172770)	56.0	NM_172770	235330.0	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding	0.5	9.0	2.0	0.0	3.5	4.5
Merged-chr1-74788090-4	chr1	74787641	74788641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3878.0	NM_009518	22409.0	Mm.5130	NM_009518	ENSMUSG00000026167	Wnt10a	-	wingless-type MMTV integration site family, member 10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-94603216-4	chr4	94602715	94603715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172695)	promoter-TSS (NM_172695)	32.0	NM_172695	18786.0	Mm.490101	NM_172695	ENSMUSG00000028577	Plaa	2410007N06|AI536418|AU018445|AW208417|D4Ertd618e|PLA2P|PLAP|Ufd3	phospholipase A2, activating protein	protein-coding	105.0	256.5	267.5	130.0	303.0	274.5
Merged-chr2-34767247-2	chr2	34766747	34767747	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4843.0	NM_001163434	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61087102-4	chr18	61086626	61087626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18446.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28338315-2	chr7	28337815	28338815	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013676, intron 2 of 29)	CpG	404.0	NM_013676	20924.0	Mm.285906	NM_013676	ENSMUSG00000003435	Supt5	AL033283|AL033321|AU019549|Spt5|Supt5h	suppressor of Ty 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-113630100-4	chr3	113629520	113630520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026043, exon 1 of 15)	exon (NM_026043, exon 1 of 15)	129.0	NM_001287015	67225.0	Mm.316928	NM_026043	ENSMUSG00000027981	Rnpc3	2810441O16Rik|AI447568|C030014B17Rik	RNA-binding region (RNP1, RRM) containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98511485-4	chr15	98510992	98511992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8342.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95888862-4	chr3	95888365	95889365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001346514, exon 3 of 6)	exon (NM_001346514, exon 3 of 6)	3140.0	NM_153513	229600.0	Mm.89556	NM_153513	ENSMUSG00000038543	BC028528	L259	cDNA sequence BC028528	protein-coding	0.5	16.5	12.5	3.0	30.0	28.5
Merged-chr3-103021509-1	chr3	103021009	103022009	+	1000.0	f0_c57.idr	intron (NM_001310693, intron 1 of 17)	intron (NM_001310693, intron 1 of 17)	963.0	NM_144901	229663.0	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39781895-4	chr6	39781391	39782391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29045.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5238891-6	chr17	5238328	5239328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	179939.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27552249-4	chr7	27551742	27552742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317355, intron 1 of 13)	intron (NM_001317355, intron 1 of 13)	976.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76355458-4	chr16	76354942	76355942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	ID4_|SINE|ID	17607.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23551647-4	chr13	23551129	23552129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175655)	promoter-TSS (NM_175655)	14.0	NM_175655	319157.0	Mm.442307	NM_175655	ENSMUSG00000069274	Hist1h4f	-	histone cluster 1, H4f	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30956866-4	chr7	30956367	30957367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011680)	promoter-TSS (NM_011680)	-64.0	NM_011680	22282.0	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44381710-4	chr10	44381198	44382198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22022.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47338102-2	chr19	47337602	47338602	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 6 of 14)	MTD|LTR|ERVL-MaLR	-64513.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-46833451-4	chr7	46832944	46833944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12360.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-133659995-4	chr3	133659502	133660502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115612.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26493128-4	chr2	26492629	26493629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 2 of 33)	intron (NM_008714, intron 2 of 33)	10693.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87748838-4	chr11	87748366	87749366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7998.0	NR_029555	387160.0		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	149.0	358.5	250.5	128.0	383.5	209.5
Merged-chr19-9952528-4	chr19	9952021	9953021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-28079.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	113.0	200.0	162.5	101.0	225.5	167.0
Merged-chr12-112934067-2	chr12	112933567	112934567	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025399)	TTS (NM_025399)	-4572.0	NM_010588	16450.0	Mm.186146	NM_010588	ENSMUSG00000002799	Jag2	D12Ggc2e|Serh|mJagged2-1|sm	jagged 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5074798-2	chr19	5074298	5075298	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	6720.0	NM_054042	70445.0	Mm.29597	NM_054042	ENSMUSG00000056481	Cd248	2610111G01Rik|AI842296|Cd164l1|Tem1	CD248 antigen, endosialin	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr7-4504906-4	chr7	4504401	4505401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360154, intron 12 of 12)	intron (NM_001360154, intron 12 of 12)	-3221.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99137906-2	chr9	99137406	99138406	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 1 of 23)	ID_B1|SINE|B4	2305.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-18012905-2	chr5	18012405	18013405	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 5 of 7)	B1F2|SINE|Alu	50335.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63079106-4	chr14	63078590	63079590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	24017.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118610763-4	chr9	118610256	118611256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	4047.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90847144-4	chr2	90846652	90847652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317241)	promoter-TSS (NM_001317241)	-3.0	NM_001317241	56428.0	Mm.28023	NM_019758	ENSMUSG00000027282	Mtch2	2310034D24Rik|4930539J07Rik|HSPC032	mitochondrial carrier 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40677354-1	chr19	40676854	40677854	+	1000.0	f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	17584.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	2.0	25.5	17.5	29.5	22.5	20.0
Merged-chr3-9249906-4	chr3	9249417	9250417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177660)	promoter-TSS (NM_177660)	-650.0	NM_177660	229055.0	Mm.103262	NM_177660	ENSMUSG00000069114	Zbtb10	4832414A18|AU021107|RINZF	zinc finger and BTB domain containing 10	protein-coding	0.0	4.5	1.0	2.5	0.5	0.5
Merged-chr8-73849965-3	chr8	73849457	73850457	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-496417.0	NM_010687	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	8.0	0.5	4.5	1.0	2.5	2.0
Merged-chr2-34646456-4	chr2	34645960	34646960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	108772.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105616818-4	chr5	105616303	105617303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83166.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-9428074-4	chr15	9427568	9428568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7960.0	NM_029341	75568.0	Mm.82143	NM_029341	ENSMUSG00000039676	Capsl	1700028N11Rik|AW125205	calcyphosine-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121661059-2	chr5	121660563	121661563	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028037)	promoter-TSS (NM_028037)	194.0	NM_001289544	72399.0	Mm.153372	NM_028227	ENSMUSG00000029458	Brap	3010002G07Rik|BRAP2|IMP	BRCA1 associated protein	protein-coding	6.5	5.0	6.0	0.5	8.0	4.5
Merged-chr16-45174056-4	chr16	45173559	45174559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356366, intron 4 of 10)	Lx8|LINE|L1	15230.0	NM_026402	67841.0	Mm.41775	NM_026402	ENSMUSG00000022663	Atg3	2610016C12Rik|APG3|Apg3l|Atg3l|PC3-96	autophagy related 3	protein-coding	2.0	8.5	5.0	4.0	4.0	8.0
Merged-chr1-151343200-4	chr1	151342704	151343704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1282.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80167667-4	chr10	80167160	80168160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007705)	promoter-TSS (NM_007705)	-179.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41324409-2	chr19	41323909	41324909	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 7 of 16)	intron (NM_031376, intron 7 of 16)	-60405.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155067596-2	chr4	155067096	155068096	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042407, intron 1 of 5)	intron (NM_001042407, intron 1 of 5)	566.0	NM_001042407	668173.0	Mm.133114	NM_001042407	ENSMUSG00000029047	Pex10	AV128229|Gm142	peroxisomal biogenesis factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84800518-4	chr2	84800027	84801027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019949, intron 1 of 3)	intron (NM_019949, intron 1 of 3)	1699.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65783786-4	chr17	65783279	65784279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152099, intron 2 of 20)	CpG-6545	424.0	NR_104465	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	16.0	88.0	67.5	18.5	88.5	80.0
Merged-chr7-16314083-4	chr7	16313596	16314596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133234, intron 3 of 3)	intron (NM_133234, intron 3 of 3)	4513.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93603970-4	chr16	93603440	93604440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145482)	promoter-TSS (NM_145482)	-125.0	NM_145482	224440.0	Mm.10628	NM_145482	ENSMUSG00000022948	Setd4	AY037804|C21orf18|ORF21	SET domain containing 4	protein-coding	208.0	357.0	371.0	199.0	320.0	355.0
Merged-chr9-105495155-4	chr9	105494639	105495639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175025)	promoter-TSS (NM_175025)	-6.0	NM_001253836	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	84.5	209.5	161.0	54.0	163.5	105.5
Merged-chr12-110706988-4	chr12	110706490	110707490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10595.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-146099969-3	chr2	146099495	146100495	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122002.0	NM_016889	53626.0	Mm.379070	NM_016889	ENSMUSG00000068154	Insm1	IA-1	insulinoma-associated 1	protein-coding	1.5	0.0	6.5	5.5	0.0	4.5
Merged-chr12-70453080-4	chr12	70452569	70453569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028339)	promoter-TSS (NM_028339)	-85.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	2.5	11.0	1.5	5.0	4.0	3.5
Merged-chr6-30076357-1	chr6	30075857	30076857	+	1000.0	f0_balb.idr	promoter-TSS (NM_001164229)	promoter-TSS (NM_001164229)	36.0	NM_001164229	18181.0	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	11.5	5.0	4.0	2.5	5.5	9.0
Merged-chr2-34906987-4	chr2	34906487	34907487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028716, intron 4 of 14)	intron (NM_028716, intron 4 of 14)	6989.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-6955929-4	chr6	6955426	6956426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077713)	promoter-TSS (NM_001077713)	-92.0	NM_001077713	71238.0	Mm.389086	NM_001077713	ENSMUSG00000042505	Sdhaf3	0610005M07Rik|4933430A16Rik|Acn9	succinate dehydrogenase complex assembly factor 3	protein-coding	3.5	13.5	5.5	3.0	6.0	6.5
Merged-chr4-16162668-2	chr4	16162168	16163168	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_138102, intron 1 of 11)	intron (NR_138102, intron 1 of 11)	975.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127330432-1	chr7	127329932	127330932	+	1000.0	f1_balb.idr	intron (NM_001253873, intron 30 of 30)	intron (NM_001253873, intron 30 of 30)	14882.0	NM_146202	233890.0	Mm.23031	NM_146202	ENSMUSG00000047371	Zfp768	BC026432|Znf768	zinc finger protein 768	protein-coding	14.0	0.5	7.5	4.0	1.0	1.0
Merged-chr13-37344050-2	chr13	37343550	37344550	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-1295.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152537511-2	chr1	152537011	152538011	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 11 of 17)	intron (NM_016846, intron 11 of 17)	87706.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74898029-4	chr11	74897530	74898530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177325)	promoter-TSS (NM_177325)	-50.0	NM_177325	104662.0	Mm.220843	NM_177325	ENSMUSG00000038335	Tsr1	AU040765|AW550801|mKIAA1401	TSR1 20S rRNA accumulation	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98263114-4	chr13	98262639	98263639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178918)	promoter-TSS (NM_178918)	63.0	NM_001271388	68558.0	Mm.209642	NM_023472	ENSMUSG00000021661	Ankra2	1110004M18Rik|Ankra	ankyrin repeat, family A (RFXANK-like), 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99107577-2	chr10	99107077	99108077	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015737)	promoter-TSS (NM_015737)	495.0	NR_153333	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-81102342-4	chr3	81101824	81102824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	65908.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	65.5	177.5	62.0	62.5	147.5	69.0
Merged-chr9-118706827-2	chr9	118706330	118707330	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 15 of 27)	intron (NM_133721, intron 15 of 27)	-4862.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	42.5	88.5	82.5	34.0	75.0	41.0
Merged-chr2-148498019-3	chr2	148497514	148498514	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54479.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0.0	0.5	1.5	0.0	4.0	3.5
Merged-chr2-3727823-4	chr2	3727332	3728332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	14374.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45591517-2	chr7	45591017	45592017	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16341.0	NR_038165	71661.0	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127498371-3	chr3	127497875	127498875	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	740.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	17.5	49.0	75.5	0.0	1.0	1.5
Merged-chr2-27282063-2	chr2	27281563	27282563	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 17 of 29)	intron (NR_133905, intron 17 of 29)	-34760.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5190236-4	chr17	5189744	5190744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	195170.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122459383-4	chr7	122458864	122459864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 5 of 16)	intron (NM_001316672, intron 5 of 16)	170239.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-42943616-4	chr17	42943106	42944106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67182.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	6.5	9.0	11.5	2.0	12.5	11.5
Merged-chr9-108492225-3	chr9	108491724	108492724	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168373, intron 1 of 26)	intron (NM_001168373, intron 1 of 26)	1548.0	NM_001168373	71472.0	Mm.289706	NM_027804	ENSMUSG00000006676	Usp19	8430421I07Rik|AI047774|Zmynd9	ubiquitin specific peptidase 19	protein-coding	1.0	1.0	1.5	0.0	5.0	0.5
Merged-chr9-21014824-4	chr9	21014345	21015345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-1095.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57198457-4	chr17	57197958	57198958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-4277.0	NM_019418	50930.0	Mm.483369	NM_019418	ENSMUSG00000005824	Tnfsf14	HVEM-L|HVEML|LIGHT|LTg|Ly113|Tnlg1d	tumor necrosis factor (ligand) superfamily, member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-10924651-4	chr8	10924143	10925143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030715, exon 3 of 3)	non-coding (NR_030715, exon 3 of 3)	3814.0	NR_030715	665306.0	Mm.358758	NR_030715	ENSMUSG00000038917	3930402G23Rik	-	RIKEN cDNA 3930402G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-73492557-4	chr5	73492058	73493058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178896, intron 1 of 10)	CpG	1532.0	NM_178896	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	24.0	86.5	40.0	9.5	66.5	26.5
Merged-chr1-125434729-4	chr1	125434243	125435243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205386, intron 2 of 12)	intron (NM_001205386, intron 2 of 12)	984.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128839935-4	chr4	128839433	128840433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33821.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-12223538-4	chr12	12223037	12224037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38602.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	54.0	171.5	134.0	74.5	148.5	132.5
Merged-chr7-27731427-4	chr7	27730934	27731934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029531)	promoter-TSS (NM_029531)	25.0	NM_009560	22718.0	Mm.66913	NM_009560	ENSMUSG00000037640	Zfp60	6330516O17Rik|AI426106|AI449354|Mfg-3|Mfg3	zinc finger protein 60	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19941353-4	chr10	19940866	19941866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	6840.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	12.5	37.0	23.0	12.5	66.0	37.5
Merged-chr19-55683929-4	chr19	55683443	55684443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	MTD|LTR|ERVL-MaLR	18261.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	30.5	90.5	90.0	27.5	123.5	129.5
Merged-chr11-90002882-4	chr11	90002376	90003376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008796)	promoter-TSS (NM_008796)	18.0	NM_008796	18559.0	Mm.5062	NM_008796	ENSMUSG00000020553	Pctp	PC-TP|StarD2	phosphatidylcholine transfer protein	protein-coding	11.5	14.5	2.5	8.0	2.0	9.5
Merged-chr11-51916766-4	chr11	51916276	51917276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50855.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	4.0	2.5	3.5	4.0	2.5	3.5
Merged-chr16-90426329-4	chr16	90425815	90426815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015755, intron 1 of 10)	intron (NM_015755, intron 1 of 10)	39918.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91931573-4	chr16	91931055	91932055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138597)	promoter-TSS (NM_138597)	75.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36511793-4	chr1	36511314	36512314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053186)	promoter-TSS (NM_053186)	-53.0	NM_001331209	94218.0	Mm.256323	NM_053186	ENSMUSG00000001138	Cnnm3	Acdp3|Clp3|mACDP3	cyclin M3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-48908917-4	chr7	48908421	48909421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27325.0	NM_001360812	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86273513-4	chr15	86273016	86274016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 4 of 12)	intron (NM_145476, intron 4 of 12)	-4159.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69486229-4	chr12	69485747	69486747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-10697.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	7.0	13.5	13.0	6.0	45.5	13.5
Merged-chr14-103020978-3	chr14	103020484	103021484	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 2 of 2)	intron (NR_045657, intron 2 of 2)	12819.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124723808-4	chr6	124723322	124724322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077705, intron 11 of 15)	intron (NM_001077705, intron 11 of 15)	-5432.0	NR_029792	723944.0		NR_029792	ENSMUSG00000065462	Mir200c	Mirn200c|mir-200c	microRNA 200c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29435600-4	chr17	29435085	29436085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1N2|LTR|ERVL-MaLR	-55460.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	34.5	133.0	72.5	12.0	111.0	55.5
Merged-chr1-105094814-2	chr1	105094314	105095314	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-261193.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34608805-4	chr6	34608297	34609297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 1 of 13)	intron (NM_001347100, intron 1 of 13)	10293.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	1.5	4.0	1.0	1.5	4.0	1.0
Merged-chr19-5088020-4	chr19	5087537	5088537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026553)	promoter-TSS (NM_026553)	-501.0	NM_026553	68090.0	Mm.44202	NM_026553	ENSMUSG00000024875	Yif1a	5330422J23Rik|54TM|Yif1|Yif1p	Yip1 interacting factor homolog A (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-103732785-4	chr5	103732225	103733225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21437.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70111976-4	chr12	70111483	70112483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104398)	promoter-TSS (NR_104398)	52.0	NM_001286080	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148681555-4	chr2	148681066	148682066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355689, intron 1 of 5)	intron (NM_001355689, intron 1 of 5)	446.0	NM_028986	74533.0	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140342679-2	chr5	140342179	140343179	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172277, intron 10 of 10)	ID_B1|SINE|B4	10723.0	NM_001356584	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr2-21179310-4	chr2	21178779	21179779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26086.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80179494-3	chr7	80178961	80179961	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7380.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	23.5	67.5	34.5	3.0	0.0	9.0
Merged-chr7-80097744-2	chr7	80097244	80098244	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173011, intron 7 of 10)	intron (NM_173011, intron 7 of 10)	17606.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122498027-1	chr8	122497527	122498527	+	1000.0	f1_balb.idr	intron (NM_001037298, intron 15 of 50)	intron (NM_001037298, intron 15 of 50)	21884.0	NR_152823	66965.0	Mm.482288	NM_153775	ENSMUSG00000049482	Ctu2	2310061F22Rik|C16orf84|Ncs2	cytosolic thiouridylase subunit 2	protein-coding	1.5	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75700941-4	chr7	75700446	75701446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 16 of 36)	intron (NM_029332, intron 16 of 36)	-147392.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87755930-4	chr1	87755437	87756437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205391)	promoter-TSS (NM_001205391)	-74.0	NM_029846	77040.0	Mm.272972	NM_029846	ENSMUSG00000026289	Atg16l1	1500009K01Rik|Apg16l|Atg16l|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113146849-3	chr12	113146294	113147294	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5218.0	NM_007763	12925.0	Mm.272368	NM_007763	ENSMUSG00000006360	Crip1	CRHP|CRP1|Crip	cysteine-rich protein 1 (intestinal)	protein-coding	15.5	15.0	5.5	1.0	25.5	7.0
Merged-chr19-38025528-4	chr19	38025026	38026026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 1 of 53)	intron (NM_001302140, intron 1 of 53)	18051.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	90.0	100.5	88.0	78.5	167.5	104.0
Merged-chr4-34526914-4	chr4	34526405	34527405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23710.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63562036-4	chr4	63561554	63562554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144905, intron 2 of 9)	intron (NM_144905, intron 2 of 9)	1827.0	NM_144905	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83779231-2	chr6	83778731	83779731	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3419.0	NM_009357	21766.0	Mm.28371	NM_009357	ENSMUSG00000014748	Tex261	3110001O07Rik|AA409339|AI480706|AL033351|TEG-261	testis expressed gene 261	protein-coding	1.5	0.0	3.5	1.5	0.0	3.5
Merged-chr5-31883444-2	chr5	31882944	31883944	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 6 of 11)	intron (NM_144541, intron 6 of 11)	185394.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12468657-4	chr13	12468151	12469151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6913.0	NM_001291057	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96557880-4	chr3	96557399	96558399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023719)	promoter-TSS (NM_023719)	-58.0	NM_023719	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	4.5	53.0	16.0	12.5	39.5	13.0
Merged-chr1-93804246-3	chr1	93803726	93804726	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025454, intron 1 of 7)	CpG	261.0	NM_025454	66262.0	Mm.64065	NM_025454	ENSMUSG00000026283	Ing5	1700001C14Rik|1700027H23Rik|1810018M11Rik|AI225768	inhibitor of growth family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153147414-4	chr2	153146903	153147903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 11 of 12)	intron (NM_001172117, intron 11 of 12)	-13898.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23700267-4	chr17	23699755	23700755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-16229.0	NM_020293	56863.0	Mm.491368	NM_020293	ENSMUSG00000066720	Cldn9	nmf329	claudin 9	protein-coding	0.5	0.0	0.0	0.5	1.0	3.0
Merged-chr19-53566050-3	chr19	53565557	53566557	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AmnSINE1|SINE|Deu	-34339.0	NM_007790	13006.0	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136116642-4	chr5	136116153	136117153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011293)	promoter-TSS (NM_011293)	-38.0	NM_011293	20022.0	Mm.4896	NM_011293	ENSMUSG00000039771	Polr2j	14.5kDa|Polr2i|Rpb11a|Rpo2-4	polymerase (RNA) II (DNA directed) polypeptide J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94358973-4	chr13	94358462	94359462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009680)	promoter-TSS (NM_009680)	2.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163662875-4	chr2	163662366	163663366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 2 of 4)	B3|SINE|B2	4408.0	NM_001164053	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46598117-1	chr19	46597617	46598617	+	1000.0	f1_balb.idr	promoter-TSS (NM_001177812)	promoter-TSS (NM_001177812)	-989.0	NM_001177812	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	0.5	22.5	13.5	6.5	8.0	13.0
Merged-chr4-131843514-4	chr4	131843027	131844027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025297)	promoter-TSS (NM_025297)	56.0	NM_025297	26922.0	Mm.192706	NM_025297	ENSMUSG00000028910	Mecr	AI195831|NRBF-1|Nrbf1	mitochondrial trans-2-enoyl-CoA reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127314052-2	chr10	127313552	127314552	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2266.0	NM_001171582	216443.0	Mm.28173	NM_001003913	ENSMUSG00000040354	Mars	Metrs|Mtrns	methionine-tRNA synthetase	protein-coding	0.5	0.0	2.5	0.5	0.5	0.0
Merged-chr14-99099800-4	chr14	99099292	99100292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028315)	promoter-TSS (NM_028315)	-22.0	NR_153390	72662.0	Mm.163339	NM_028315	ENSMUSG00000033166	Dis3	2810028N01Rik	DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88526410-4	chr3	88525906	88526906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5989.0	NM_001029890	72640.0	Mm.275154	NM_001029890	ENSMUSG00000074480	Mex3a	2700083E18Rik|Gm411|Rkhd4	mex3 RNA binding family member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32615335-4	chr4	32614828	32615828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122978)	promoter-TSS (NM_001122978)	-142.0	NM_001122978	26885.0	Mm.22279	NM_011997	ENSMUSG00000028282	Casp8ap2	D4Ertd659e|FLASH	caspase 8 associated protein 2	protein-coding	5.5	21.0	25.5	8.5	27.0	7.5
Merged-chr7-113514440-2	chr7	113513940	113514940	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360668, intron 1 of 12)	intron (NM_001360668, intron 1 of 12)	606.0	NM_001360669	67420.0	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25221369-4	chr7	25220888	25221888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175436)	promoter-TSS (NM_175436)	-37.0	NM_175436	210172.0	Mm.129371	NM_175436	ENSMUSG00000046541	Zfp526	D030024H03Rik|Znf526	zinc finger protein 526	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141560160-4	chr4	141559657	141560657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13995.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	170.5	341.5	284.0	177.0	298.0	307.0
Merged-chr17-81580622-4	chr17	81580130	81581130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	157757.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37658204-4	chr13	37657708	37658708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20A4|LTR|ERVK	-167830.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	37.5	110.5	77.5	19.0	80.5	62.5
Merged-chr17-70966240-4	chr17	70965669	70966669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24347.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50691015-4	chr16	50690512	50691512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-36120.0	NR_105782	102466634.0		NR_105782	ENSMUSG00000098482	Mir6363	Gm28026|mmu-mir-6363	microRNA 6363	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135633664-4	chr1	135633156	135634156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35880.0	NR_151586	215714.0	Mm.472859	NM_175447		Gm4793	EG215714	predicted gene 4793	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111559830-4	chr12	111559317	111560317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4c|LINE|L1	14585.0	NR_045295	100504687.0	Mm.26072	NR_045295	ENSMUSG00000096995	2810029C07Rik	AU017849	RIKEN cDNA 2810029C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64754585-4	chr17	64754065	64755065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008549, exon 22 of 22)	3' UTR (NM_008549, exon 22 of 22)	-12546.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34660264-4	chr5	34659754	34660754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029278)	promoter-TSS (NM_029278)	-106.0	NM_029278	75416.0	Mm.40292	NM_029278	ENSMUSG00000036693	Nop14	2610033H07Rik|Nol14	NOP14 nucleolar protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-93205446-4	chr5	93204947	93205947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017367, intron 1 of 6)	intron (NM_017367, intron 1 of 6)	1048.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32346480-2	chr11	32345980	32346980	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1331.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101303039-2	chr11	101302539	101303539	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019584)	promoter-TSS (NM_019584)	-753.0	NM_001359821	56208.0	Mm.178947	NM_019584	ENSMUSG00000035086	Becn1	Atg6	beclin 1, autophagy related	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21032317-4	chr14	21031800	21032800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009502, exon 21 of 21)	3' UTR (NM_009502, exon 21 of 21)	20142.0	NM_018829	55946.0	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120589270-4	chr8	120588787	120589787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178856)	promoter-TSS (NM_178856)	-212.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-23141616-3	chr19	23141121	23142121	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010638, exon 1 of 2)	5' UTR (NM_010638, exon 1 of 2)	395.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-40436083-4	chr6	40435627	40436627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356375)	promoter-TSS (NM_001356375)	8.0	NM_001356375	243780.0	Mm.333006	NM_175528	ENSMUSG00000037172	E330009J07Rik	AI841796|Lchn|mKIAA1147	RIKEN cDNA E330009J07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110099771-2	chr5	110099271	110100271	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207279)	promoter-TSS (NM_207279)	-198.0	NM_207279	403178.0	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	1.5	1.0	1.0	3.5	2.0	0.5
Merged-chr5-88676218-4	chr5	88675687	88676687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178700)	promoter-TSS (NM_178700)	-16.0	NM_178700	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-63938829-4	chr5	63938301	63939301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145923, intron 1 of 6)	intron (NM_145923, intron 1 of 6)	30096.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	0.0	0.0	6.0	0.0	0.0	0.5
Merged-chr7-44952943-4	chr7	44952431	44953431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077591, intron 6 of 10)	intron (NM_001077591, intron 6 of 10)	9691.0	NM_011651	22116.0	Mm.84502	NM_011651	ENSMUSG00000059891	Tsks	Stk22s1|Tssks1	testis-specific serine kinase substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3344481-4	chr5	3343959	3344959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009873, exon 2 of 8)	exon (NM_009873, exon 2 of 8)	566.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-51209751-4	chr17	51209261	51210261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30409.0	NM_001285991	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45245108-3	chr9	45244606	45245606	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 4 of 4)	intron (NM_001198971, intron 4 of 4)	21601.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-76228149-4	chr18	76227653	76228653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13548.0	NM_010754	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	4.5	2.0	5.0	1.5	4.0	11.5
Merged-chr17-35835281-2	chr17	35834781	35835781	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011655, exon 4 of 4)	exon (NM_011655, exon 4 of 4)	3020.0	NM_011655	22154.0	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37259262-4	chr10	37258752	37259752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120326.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118487574-2	chr11	118487074	118488074	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153103, exon 14 of 14)	non-coding (NR_153103, exon 14 of 14)	10742.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61176682-4	chr18	61176205	61177205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178277, exon 1 of 20)	5' UTR (NM_178277, exon 1 of 20)	344.0	NM_178277	106894.0	Mm.22574	NM_134134	ENSMUSG00000024622	Hmgxb3	2510002C16Rik|A630042L21Rik|AI413166|mKIAA0194	HMG box domain containing 3	protein-coding	52.0	134.5	59.5	50.5	95.0	53.0
Merged-chr2-166018950-4	chr2	166018431	166019431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	26294.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	4.5	0.5	16.5	3.5	18.5	12.0
Merged-chr7-114892841-4	chr7	114892335	114893335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55815.0	NR_040317	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	0.0	1.0	4.5	5.5	7.5	1.5
Merged-chr3-51197317-4	chr3	51196803	51197803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27144.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96196272-4	chr9	96195774	96196774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001184708)	promoter-TSS (NM_001184708)	-1.0	NM_001184706	211586.0	Mm.17977	NM_178667	ENSMUSG00000032411	Tfdp2	1110029I05Rik|A330080J22Rik|DP-3|DP3	transcription factor Dp 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-133495648-4	chr2	133495151	133496151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56508.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59227554-1	chr11	59227054	59228054	+	1000.0	f1_balb.idr	intron (NM_007476, intron 1 of 4)	CpG	608.0	NM_001130408	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	132.0	370.0	238.5	163.0	337.5	246.0
Merged-chr14-64187551-4	chr14	64187050	64188050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253715, intron 4 of 4)	intron (NM_001253715, intron 4 of 4)	83227.0	NM_028525	73382.0	Mm.481055	NM_028525	ENSMUSG00000021966	Prss52	1700049K14Rik|Tesp3	protease, serine 52	protein-coding	2.5	0.0	1.5	0.0	5.0	0.0
Merged-chr17-84103598-4	chr17	84103088	84104088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24928.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83065034-4	chr11	83064542	83065542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011408)	promoter-TSS (NM_011408)	-70.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34007436-4	chr13	34006916	34007916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009068, intron 1 of 10)	intron (NM_009068, intron 1 of 10)	4542.0	NM_009068	19766.0	Mm.374799	NM_009068	ENSMUSG00000021408	Ripk1	D330015H01Rik|RIP|RIP-1|Rinp|Rip1	receptor (TNFRSF)-interacting serine-threonine kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-88998484-4	chr11	88998019	88999019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009546)	promoter-TSS (NM_009546)	-884.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	7.5	39.5	18.0	25.0	25.0	12.0
Merged-chr8-105827726-1	chr8	105827226	105828226	+	1000.0	f0_c57.idr	promoter-TSS (NM_024445)	promoter-TSS (NM_024445)	-18.0	NM_024445	72236.0	Mm.386810	NM_024445	ENSMUSG00000031893	Tsnaxip1	1700016K08Rik|TXI1	translin-associated factor X (Tsnax) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160136993-4	chr2	160136495	160137495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	120342.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	25.5	28.0	18.0	16.5	19.0	19.5
Merged-chr10-21809708-4	chr10	21809161	21810161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72523.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	10.5	3.0	5.5	7.0	2.0	5.0
Merged-chr9-89705055-4	chr9	89704577	89705577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025360)	promoter-TSS (NM_025360)	-34.0	NM_025360	66111.0	Mm.27606	NM_025360	ENSMUSG00000032353	Tmed3	1200002G13Rik|AW546672|P24b	transmembrane p24 trafficking protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22698215-4	chr8	22697696	22698696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159774, intron 2 of 21)	intron (NM_001159774, intron 2 of 21)	8387.0	NM_010546	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-22895434-4	chr2	22894928	22895928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019501)	promoter-TSS (NM_019501)	-94.0	NM_019501	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80146927-2	chr10	80146427	80147427	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-1345.0	NM_001305798	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12461506-4	chr13	12461025	12462025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_018886, exon 1 of 10)	5' UTR (NM_018886, exon 1 of 10)	213.0	NM_001291060	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-27349503-4	chr16	27349010	27350010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198112, intron 4 of 4)	intron (NM_198112, intron 4 of 4)	20729.0	NM_198166	224065.0	Mm.326918	NM_198166	ENSMUSG00000056423	Uts2b	Gm538|U2B|Urp|Uts2d	urotensin 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96715248-4	chr15	96714733	96715733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-15505.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-54112688-6	chr10	54112201	54113201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36779.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54149986-4	chr11	54149480	54150480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	49056.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-41299149-2	chr8	41298649	41299649	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023662, intron 22 of 37)	intron (NM_023662, intron 22 of 37)	59390.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	6.5	6.0	7.0	4.0	2.0	2.5
Merged-chr1-152025464-4	chr1	152024955	152025955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 1 of 5)	MTD|LTR|ERVL-MaLR	64865.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98890998-4	chr13	98890486	98891486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001048267)	promoter-TSS (NM_001048267)	56.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112800733-4	chr13	112800209	112801209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008247)	promoter-TSS (NM_008247)	-68.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	53.0	193.0	140.5	86.5	133.5	49.0
Merged-chr8-10006607-4	chr8	10006111	10007111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033622)	promoter-TSS (NM_033622)	-22.0	NM_033622	24099.0	Mm.28835	NM_033622	ENSMUSG00000031497	Tnfsf13b	BAFF|BLyS|D8Ertd387e|TALL-1|TALL1|THANK|TNFSF20|Tnlg7a|zTNF4	tumor necrosis factor (ligand) superfamily, member 13b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146675304-4	chr6	146674825	146675825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18107.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	42.0	139.0	103.5	59.0	139.5	140.0
Merged-chr13-94743673-4	chr13	94743156	94744156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-45287.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106261306-3	chr9	106260800	106261800	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13346.0	NM_020559	11655.0	Mm.290578	NM_020559	ENSMUSG00000032786	Alas1	ALAS|ALAS-N|Alas-1|Alas-h	aminolevulinic acid synthase 1	protein-coding	3.0	12.5	2.5	3.0	2.0	0.0
Merged-chr1-75193461-2	chr1	75192961	75193961	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_051999, intron 1 of 2)	intron (NR_051999, intron 1 of 2)	1301.0	NR_051998	52231.0	Mm.259326	NM_026187	ENSMUSG00000026199	Ankzf1	1300008P06Rik|2810025E10Rik|D1Ertd161e	ankyrin repeat and zinc finger domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75754168-4	chr14	75753683	75754683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177381, intron 1 of 22)	CpG	310.0	NM_177381	338337.0	Mm.86507	NM_177381	ENSMUSG00000034893	Cog3	E430004N23	component of oligomeric golgi complex 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106273780-2	chr11	106273280	106274280	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130187)	promoter-TSS (NM_001130187)	-808.0	NM_001130187	83796.0	Mm.21772	NM_031878	ENSMUSG00000078619	Smarcd2	AW322457|Baf60b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7250816-4	chr9	7250338	7251338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21676.0	NM_008607	17386.0	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106542606-2	chr11	106542106	106543106	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198292, intron 5 of 11)	ORR1B1|LTR|ERVL-MaLR	41615.0	NR_030703	100216537.0		NR_030703	ENSMUSG00000065126	Snord104	-	small nucleolar RNA, C/D box 104	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85716006-2	chr11	85715506	85716506	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045875, intron 1 of 5)	intron (NR_045875, intron 1 of 5)	3738.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96245318-4	chr3	96244843	96245843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013549)	promoter-TSS (NM_013549)	-114.0	NM_178212	319192.0	Mm.5220	NM_178212	ENSMUSG00000063954	Hist2h2aa2	H2a-614|H2a-615	histone cluster 2, H2aa2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118040374-4	chr9	118039860	118040860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001048146)	promoter-TSS (NM_001048146)	-162.0	NM_001286507	27215.0	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	7.5	18.0	5.0	0.0	3.5	0.5
Merged-chr16-77030615-4	chr16	77030110	77031110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 1 of 23)	intron (NM_013918, intron 1 of 23)	16541.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56036725-4	chr17	56036229	56037229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252471)	promoter-TSS (NM_001252471)	-70.0	NM_001357649	20405.0	Mm.1773	NM_013664	ENSMUSG00000003200	Sh3gl1	C77078|EEN|SH3P8|Sh3d2b	SH3-domain GRB2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113931068-4	chr5	113930578	113931578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22372.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	7.5	1.0	0.0	0.0	0.0	0.0
Merged-chr19-4053133-2	chr19	4052633	4053633	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6314.0	NM_144869	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-18237435-3	chr10	18236932	18237932	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2451.0	NM_144820	215814.0	Mm.296565	NM_144820	ENSMUSG00000059554	Ccdc28a	1700009P13Rik|AI480677	coiled-coil domain containing 28A	protein-coding	0.5	7.0	3.5	0.0	1.5	4.0
Merged-chr12-78748836-4	chr12	78748341	78749341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019579)	promoter-TSS (NM_019579)	-106.0	NM_019579	56217.0	Mm.425777	NM_019579	ENSMUSG00000021112	Mpp5	3830420B02Rik|AI255216|AI644496|Pals1	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)	protein-coding	8.0	7.0	23.5	8.0	7.5	24.5
Merged-chr7-13024374-4	chr7	13023813	13024813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011588, exon 1 of 17)	5' UTR (NM_011588, exon 1 of 17)	161.0	NM_011588	21849.0	Mm.15701	NM_011588	ENSMUSG00000005566	Trim28	AA408787|KAP-1|KRIP-1|MommeD9|Tif1b|Tif1beta	tripartite motif-containing 28	protein-coding	33.5	55.5	33.5	25.0	47.5	56.0
Merged-chr12-70477743-4	chr12	70477231	70478231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037248, intron 2 of 4)	LTR16E2|LTR|ERVL	24577.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117847481-2	chr10	117846981	117847981	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1507.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-26697282-4	chr19	26696787	26697787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011416, intron 22 of 32)	intron (NM_011416, intron 22 of 32)	-50878.0	NM_001347439	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127676898-4	chr10	127676377	127677377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113211)	promoter-TSS (NM_001113211)	-188.0	NM_173732	210035.0	Mm.251075	NM_173732	ENSMUSG00000040195	Nemp1	Tmem194|Tmem194a	nuclear envelope integral membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64883668-4	chr5	64883191	64884191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49008.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-38019074-4	chr7	38018564	38019564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011274, intron 1 of 10)	CpG	488.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	134.0	281.5	188.5	122.5	244.0	193.5
Merged-chr7-19699773-4	chr7	19699282	19700282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009696)	promoter-TSS (NM_009696)	-594.0	NM_009696	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125552242-4	chr7	125551744	125552744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008700)	promoter-TSS (NM_001008700)	-38.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	96.5	212.5	215.5	99.0	222.5	202.0
Merged-chr1-36368808-4	chr1	36368313	36369313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172652, intron 1 of 20)	CpG	368.0	NM_172652	226976.0	Mm.24734	NM_172652	ENSMUSG00000010453	Kansl3	4632411B12Rik|4932435K23|AI431067|AI647574|C85723|Kiaa1310|mKIAA1310	KAT8 regulatory NSL complex subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38753688-4	chr16	38753179	38754179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152434, intron 2 of 6)	intron (NR_152434, intron 2 of 6)	11420.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125725162-4	chr8	125724682	125725682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9021.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79696155-4	chr2	79695654	79696654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11626.0	NM_172420	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	16.0	48.5	47.0	5.5	36.0	23.0
Merged-chr7-47051965-4	chr7	47051461	47052461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026436, intron 1 of 2)	intron (NM_026436, intron 1 of 2)	1321.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86524962-2	chr1	86524462	86525462	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1595.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119047016-7	chr2	119046488	119047488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029617)	promoter-TSS (NM_029617)	-131.0	NM_029617	76464.0	Mm.202518	NM_029617	ENSMUSG00000027326	Knl1	2310043D08Rik|5730505K17Rik|Casc5	kinetochore scaffold 1	protein-coding	80.5	199.0	178.0	76.0	232.5	67.5
Merged-chr6-83572503-4	chr6	83571986	83572986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024239)	promoter-TSS (NM_024239)	18.0	NM_001362078	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30953575-4	chr7	30953088	30954088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011680, intron 7 of 9)	intron (NM_011680, intron 7 of 9)	3215.0	NM_011680	22282.0	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	8.5	23.0	12.5	16.0	14.0	14.5
Merged-chr1-30949219-4	chr1	30948733	30949733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011200, intron 1 of 5)	CpG	477.0	NR_002688	433406.0	Mm.389003	NR_002688		Gm13363	-	predicted gene 13363	pseudo	151.0	331.0	281.0	126.0	304.0	302.5
Merged-chr2-24949637-4	chr2	24949110	24950110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_147179)	promoter-TSS (NM_147179)	-167.0	NM_026021	67187.0	Mm.296106	NM_026021	ENSMUSG00000026974	Zmynd19	2700064H14Rik|AA536891|AU014915|mizip	zinc finger, MYND domain containing 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61494416-4	chr11	61493906	61494906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291035)	promoter-TSS (NM_001291035)	-140.0	NM_001291034	23939.0	Mm.38172	NM_011841	ENSMUSG00000001034	Mapk7	BMK-1|BMK1|ERK-5|ERK5|Erk5-T|PRKM7|b2b2346Clo	mitogen-activated protein kinase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-4024923-4	chr15	4024424	4025424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028266, intron 1 of 1)	intron (NR_028266, intron 1 of 1)	-1504.0	NM_024188	67041.0	Mm.13445	NM_024188	ENSMUSG00000022186	Oxct1	2610008O03Rik|Oxct|Oxct2a|Scot-s	3-oxoacid CoA transferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29889172-3	chr2	29888672	29889672	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177661)	promoter-TSS (NM_001177661)	158.0	NM_001355137	18286.0	Mm.330116	NM_013615	ENSMUSG00000026790	Odf2	AI848335|MMTEST29	outer dense fiber of sperm tails 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-51865971-4	chr12	51865474	51866474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36438.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	76.5	153.0	138.5	101.0	241.5	167.0
Merged-chr6-87851131-4	chr6	87850686	87851686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013493)	promoter-TSS (NM_013493)	-80.0	NM_001355195	12785.0	Mm.290251	NM_013493	ENSMUSG00000030057	Cnbp	AA408710|Cnbp1|Znf9	cellular nucleic acid binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144698157-4	chr3	144697660	144698660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019464, intron 5 of 8)	intron (NM_019464, intron 5 of 8)	22175.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97187155-4	chr11	97186660	97187660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008379, intron 2 of 21)	CpG	732.0	NM_008379	16211.0	Mm.251013	NM_008379	ENSMUSG00000001440	Kpnb1	AA409963|IPOB|Impnb	karyopherin (importin) beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106759220-4	chr11	106758698	106759698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073165, intron 4 of 9)	intron (NR_073165, intron 4 of 9)	7972.0	NM_001033435	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6656034-4	chr17	6655575	6656575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199948)	promoter-TSS (NM_001199948)	-136.0	NM_001166627	100040531.0	Mm.457987	NM_001166627	ENSMUSG00000095677	Dynlt1f	100040631|Dynlt1e	dynein light chain Tctex-type 1F	protein-coding	14.0	45.0	22.0	10.0	55.0	43.0
Merged-chr11-69424083-4	chr11	69423578	69424578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 77 of 85)	intron (NM_001081330, intron 77 of 85)	-10403.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	17.0	19.5	14.5	14.5	11.0	13.5
Merged-chr13-49206503-2	chr13	49206003	49207003	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026738, intron 2 of 5)	intron (NM_026738, intron 2 of 5)	9523.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-63425649-1	chr2	63425149	63426149	+	1000.0	f1_balb.idr	Intergenic	L1_Mus1|LINE|L1	149639.0	NR_152174	667257.0	Mm.417007	NR_152174		Gm8541	EG667257	predicted gene 8541	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-114654774-4	chr2	114654296	114655296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025675, intron 1 of 8)	CpG	168.0	NM_001356438	66632.0	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding	59.5	75.5	72.5	52.0	94.0	70.5
Merged-chr17-70985710-4	chr17	70985201	70986201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023402, intron 1 of 3)	intron (NM_023402, intron 1 of 3)	4815.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-69211807-4	chr10	69211319	69212319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081347)	promoter-TSS (NM_001081347)	-838.0	NM_001081347	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103719431-4	chr14	103718931	103719931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19999.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77933970-4	chr15	77933459	77934459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4965.0	NM_019913	56551.0	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80391898-4	chr17	80391395	80392395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18353.0	NR_028385	791338.0	Mm.204722	NR_028385		Gm10190	-	predicted gene 10190	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121229151-4	chr11	121228652	121229652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001254735)	promoter-TSS (NM_001254735)	157.0	NM_144832	217370.0	Mm.27182	NM_144832	ENSMUSG00000039294	BC017643	-	cDNA sequence BC017643	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-153571645-11	chr3	153571135	153572135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 1 of 4)	intron (NM_011372, intron 1 of 4)	153498.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-54117971-4	chr10	54117478	54118478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42056.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135264748-2	chr5	135264248	135265248	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13701.0	NM_010246	14371.0	Mm.6256	NM_010246	ENSMUSG00000049551	Fzd9	mfz9	frizzled class receptor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-67173173-4	chr13	67172680	67173680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013769)	promoter-TSS (NM_001013769)	-2.0	NM_001013769	380855.0	Mm.284988	NM_001013769	ENSMUSG00000058900	Rsl1	rslcan-9	regulator of sex limited protein 1	protein-coding	85.5	127.5	151.0	41.5	103.5	55.5
Merged-chr5-112278973-2	chr5	112278473	112279473	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	PB1D9|SINE|Alu	2282.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-23039154-4	chr2	23038622	23039622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	intron (NM_001077190, intron 1 of 10)	1119.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128491739-2	chr10	128491239	128492239	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001317218, exon 6 of 7)	exon (NM_001317218, exon 6 of 7)	1270.0	NM_001317220	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-116976009-4	chr2	116975480	116976480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	75828.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35173531-4	chr17	35173055	35174055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019467, intron 1 of 7)	intron (NM_019467, intron 1 of 7)	2497.0	NM_019467	11629.0	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55218609-4	chr19	55218152	55219152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 12 of 20)	intron (NM_001081076, intron 12 of 20)	22584.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-172438949-2	chr2	172438449	172439449	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1629.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167713301-7	chr2	167712809	167713809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	22132.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-36792791-4	chr19	36792291	36793291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41441.0	NM_001163635	74493.0	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-26387360-4	chr11	26386891	26387891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277273, intron 1 of 13)	CpG	307.0	NR_102382	67030.0	Mm.18875	NM_025923	ENSMUSG00000004018	Fancl	2010322C19Rik|AW554273|B230118H11Rik|Phf9|Pog|gcd	Fanconi anemia, complementation group L	protein-coding	72.5	137.5	84.0	29.5	75.5	53.0
Merged-chr12-24709590-2	chr12	24709090	24710090	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009104, intron 4 of 9)	intron (NM_009104, intron 4 of 9)	1336.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	0.0	4.5	10.0	1.0	4.5	10.0
Merged-chr12-111071942-4	chr12	111071412	111072412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198023, intron 2 of 11)	intron (NM_198023, intron 2 of 11)	32114.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154408064-4	chr2	154407575	154408575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009228)	promoter-TSS (NM_009228)	9.0	NM_009228	20648.0	Mm.1541	NM_009228	ENSMUSG00000027488	Snta1	AW228934|Snt1	syntrophin, acidic 1	protein-coding	0.5	0.0	3.0	2.5	0.0	0.0
Merged-chr16-50409568-4	chr16	50409065	50410065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 2 of 16)	intron (NM_027444, intron 2 of 16)	22824.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26885530-4	chr8	26885033	26886033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61110.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-185329291-4	chr1	185328764	185329764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198653, exon 1 of 23)	exon (NM_198653, exon 1 of 23)	137.0	NM_198653	381314.0	Mm.275841	NM_198653	ENSMUSG00000026618	Iars2	2010002H18Rik|C79125	isoleucine-tRNA synthetase 2, mitochondrial	protein-coding	37.0	61.5	90.5	34.0	131.0	90.0
Merged-chr2-58166961-4	chr2	58166468	58167468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045895, intron 2 of 3)	intron (NR_045895, intron 2 of 3)	2994.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70647107-4	chr11	70646568	70647568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027445)	promoter-TSS (NM_027445)	-29.0	NM_024211	67863.0	Mm.296082	NM_024211	ENSMUSG00000014606	Slc25a11	2310022P18Rik|2oxoc	solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-85587298-4	chr9	85586839	85587839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161995.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	21.0	23.0	10.5	10.0	11.0	11.5
Merged-chr12-82401690-4	chr12	82401198	82402198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 12 of 23)	intron (NM_001167983, intron 12 of 23)	90349.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-88956928-4	chr9	88956443	88957443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009742)	promoter-TSS (NM_009742)	23.0	NM_009742	12044.0	Mm.425593	NM_009742	ENSMUSG00000102037	Bcl2a1a	A1|BB218357|Bcl2a1|Bfl-1|Hbpa1	B cell leukemia/lymphoma 2 related protein A1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38490857-2	chr18	38490357	38491357	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71950.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157135227-4	chr2	157134728	157135728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018851)	promoter-TSS (NM_018851)	-6.0	NM_018851	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29693819-4	chr11	29693315	29694315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194051)	promoter-TSS (NM_194051)	41.0	NM_194051	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	28.0	70.0	40.0	39.0	45.0	45.5
Merged-chr16-11140805-4	chr16	11140308	11141308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145931, exon 21 of 23)	exon (NM_145931, exon 21 of 23)	-6276.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49070809-4	chr7	49070298	49071298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	91360.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-65650829-4	chr7	65650329	65651329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172310, intron 3 of 18)	URR1B|DNA|hAT-Charlie	5931.0	NM_172310	272396.0	Mm.35127	NM_172310	ENSMUSG00000030515	Tarsl2	A530046H20Rik	threonyl-tRNA synthetase-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-13435408-3	chr15	13434908	13435908	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-261733.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93125445-4	chr1	93124952	93125952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9788.0	NM_001276710	11611.0	Mm.7457	NM_016702	ENSMUSG00000026272	Agxt	AGT|Agt1|Agxt1|SPT	alanine-glyoxylate aminotransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-127242940-4	chr4	127242435	127243435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030252)	promoter-TSS (NM_030252)	-849.0	NM_030252	80284.0	Mm.139607	NM_030252	ENSMUSG00000042380	Smim12	BC003266	small integral membrane protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36469370-2	chr18	36468870	36469870	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-14875.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13847800-3	chr9	13847283	13848283	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20067.0	NM_176836	72826.0	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99146252-4	chr7	99145744	99146744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5100.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	40.5	45.5	30.5	28.5	22.0	19.0
Merged-chr14-62762178-2	chr14	62761681	62762681	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045503, intron 1 of 6)	intron (NR_045503, intron 1 of 6)	-1069.0	NM_008715	18130.0	Mm.319684	NM_008715	ENSMUSG00000035161	Ints6	2900075H24Rik|AI480962|DICE1|Ddx26|HDB|Notch2l	integrator complex subunit 6	protein-coding	25.5	39.5	28.0	13.5	34.0	49.0
Merged-chr1-75317736-4	chr1	75317232	75318232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016878)	promoter-TSS (NM_016878)	-95.0	NM_001110831	13437.0	Mm.24680	NM_016878	ENSMUSG00000026209	Dnpep	AA407814	aspartyl aminopeptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-10646687-4	chr18	10646150	10647150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134130, intron 8 of 8)	intron (NM_134130, intron 8 of 8)	28854.0	NM_009226	20641.0	Mm.603	NM_009226	ENSMUSG00000002477	Snrpd1	AA407109|AL023031|SMD1	small nuclear ribonucleoprotein D1	protein-coding	2.0	1.0	1.0	2.0	1.0	1.0
Merged-chr17-78736700-4	chr17	78736189	78737189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011500)	promoter-TSS (NM_011500)	-129.0	NM_011500	268980.0	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	70.0	103.0	67.0	24.5	39.5	15.0
Merged-chr16-4894769-3	chr16	4894267	4895267	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 1 of 17)	intron (NM_001357062, intron 1 of 17)	8667.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80146544-2	chr10	80146044	80147044	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025313)	TTS (NM_025313)	-1728.0	NM_001305798	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-59228909-4	chr3	59228413	59229413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 16 of 43)	intron (NM_177855, intron 16 of 43)	-18031.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	75.0	148.5	124.5	63.0	152.0	92.0
Merged-chr5-140506556-2	chr5	140506056	140507056	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021528, intron 1 of 1)	intron (NM_021528, intron 1 of 1)	947.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-116944391-2	chr10	116943891	116944891	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359645, intron 1 of 10)	B2_Mm2|SINE|B2	6062.0	NM_001359645	216363.0	Mm.336394	NM_001003950	ENSMUSG00000064181	Rab3ip	B230311A06|Gtpat12|Rabin3	RAB3A interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130800269-4	chr4	130799777	130800777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	7740.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30040036-4	chr5	30039522	30040522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26908.0	NM_031168	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102625820-2	chr15	102625312	102626312	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001310070)	promoter-TSS (NM_001310070)	-348.0	NM_001310066	223922.0	Mm.208714	NM_146065	ENSMUSG00000099083	Atf7	1110012F10Rik|9430065F09Rik|AI549878|C130020M04Rik	activating transcription factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68723278-4	chr10	68722796	68723796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177794)	promoter-TSS (NM_177794)	-450.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-48813845-4	chr11	48813359	48814359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145377, intron 1 of 5)	MIRb|SINE|MIR	3532.0	NM_145377	211007.0	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110503585-4	chr12	110503080	110504080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081457, intron 1 of 12)	ORR1B2|LTR|ERVL-MaLR	17841.0	NM_012023	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167358679-4	chr2	167358194	167359194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-9516.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44552391-4	chr9	44551887	44552887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-25966.0	NM_007551	12145.0	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	7.5	24.0	28.5	10.0	41.5	20.5
Merged-chr6-97149906-4	chr6	97149402	97150402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-1019.0	NM_175313	101351.0	Mm.116802	NM_175313	ENSMUSG00000035245	Eogt	A130022J15Rik|AI447490|AW214473|AW259391|Aer61	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83660438-2	chr7	83659938	83660938	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 12 of 18)	intron (NM_001360088, intron 12 of 18)	-4943.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24935316-4	chr2	24934796	24935796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162485)	promoter-TSS (NM_001162485)	-15.0	NM_178408	215705.0	Mm.45275	NM_178408	ENSMUSG00000026972	Arrdc1	AI957342|BC004091	arrestin domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81859093-4	chr7	81858611	81859611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_111910, exon 1 of 8)	non-coding (NR_111910, exon 1 of 8)	110.0	NM_145375	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69893139-4	chr12	69892639	69893639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201519)	promoter-TSS (NM_201519)	24.0	NM_201519	399510.0	Mm.291936	NM_201519	ENSMUSG00000034761	Map4k5	4432415E19Rik|GCKR|KHS|MAPKKKK5	mitogen-activated protein kinase kinase kinase kinase 5	protein-coding	8.0	6.5	15.0	2.0	17.5	13.5
Merged-chr7-122021132-4	chr7	122020604	122021604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028758)	promoter-TSS (NM_028758)	94.0	NM_028758	74105.0	Mm.29619	NM_028758	ENSMUSG00000030872	Gga2	1200007E24Rik|mKIAA1080	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44405792-4	chr7	44405278	44406278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21652.0	NM_016663	20981.0	Mm.4824	NM_016663	ENSMUSG00000030731	Syt3	AI385753|sytIII	synaptotagmin III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154160223-2	chr4	154159723	154160723	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026388, exon 2 of 4)	exon (NM_026388, exon 2 of 4)	461.0	NR_151647	67808.0	Mm.288737	NM_026388	ENSMUSG00000029030	Tprgl	1200015A19Rik|Svap30|Tprg1l|mover	transformation related protein 63 regulated like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-65112662-1	chr1	65112162	65113162	+	1000.0	f0_c57.idr	intron (NM_175293, intron 5 of 7)	intron (NM_175293, intron 5 of 7)	-9299.0	NM_007774	12964.0	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51839448-4	chr13	51838954	51839954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7221.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-58415291-4	chr3	58414787	58415787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081229, exon 1 of 4)	5' UTR (NM_001081229, exon 1 of 4)	567.0	NM_001347233	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97397171-4	chr6	97396675	97397675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	62111.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118602702-2	chr9	118602202	118603202	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-4007.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39490900-4	chr18	39490395	39491395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3650.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95335910-4	chr8	95335390	95336390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133954, intron 2 of 6)	intron (NM_133954, intron 2 of 6)	3606.0	NM_133954	101985.0	Mm.29069	NM_133954	ENSMUSG00000031792	Usb1	AA960436	U6 snRNA biogenesis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-24530259-4	chr18	24529734	24530734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144861)	promoter-TSS (NM_144861)	-30.0	NM_001360807	225283.0	Mm.28427	NM_144861	ENSMUSG00000040446	Rprd1a	C77387|mKIAA4077	regulation of nuclear pre-mRNA domain containing 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-78651839-3	chr14	78651359	78652359	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081336, intron 3 of 29)	intron (NM_001081336, intron 3 of 29)	-7408.0	NR_104044	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25331914-4	chr10	25331417	25332417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27881.0	NM_001358754	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	32.0	70.0	37.5	18.0	42.5	37.0
Merged-chr2-166712484-4	chr2	166711990	166712990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	1342.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128076433-4	chr8	128075907	128076907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	201818.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	6.0	3.5	7.5	4.5	12.5	13.0
Merged-chr15-83100190-4	chr15	83099682	83100682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023475)	promoter-TSS (NM_023475)	-23.0	NM_023475	68607.0	Mm.30056	NM_023475	ENSMUSG00000058586	Serhl	0610008B10Rik|1110019M09Rik|AU019786	serine hydrolase-like	protein-coding	1.0	0.0	6.5	3.5	3.5	1.5
Merged-chr13-113844074-4	chr13	113843580	113844580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	49572.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8884562-4	chr10	8884051	8885051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	MIRb|SINE|MIR	1519.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	93.0	404.5	204.0	106.5	316.5	195.0
Merged-chr4-86427565-4	chr4	86427068	86428068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029967, exon 28 of 28)	3' UTR (NM_029967, exon 28 of 28)	130735.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-126477786-4	chr2	126477290	126478290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 3 of 27)	intron (NM_001359975, intron 3 of 27)	13763.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91950424-4	chr2	91949925	91950925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166597)	promoter-TSS (NM_001166597)	-77.0	NM_001166597	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31188897-4	chr14	31188403	31189403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347583, intron 7 of 13)	intron (NM_001347583, intron 7 of 13)	17923.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-125066714-4	chr4	125066229	125067229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175246)	promoter-TSS (NM_175246)	57.0	NM_001356560	76793.0	Mm.22548	NM_175246	ENSMUSG00000050213	Snip1	2410133M08Rik	Smad nuclear interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32698762-4	chr16	32698249	32699249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25595.0	NM_001289443	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0.0	10.5	6.0	4.0	7.5	1.5
Merged-chr14-60738733-4	chr14	60738259	60739259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310594, intron 1 of 9)	L1MB2|LINE|L1	5855.0	NM_001310594	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73524617-4	chr7	73524141	73525141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	17105.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44471188-4	chr11	44470706	44471706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024475)	promoter-TSS (NM_024475)	-658.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	70.5	197.5	112.5	55.0	183.5	100.5
Merged-chr1-172475316-4	chr1	172474809	172475809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029612)	promoter-TSS (NM_029612)	-51.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	8.0	48.0	32.5	29.0	55.0	24.5
Merged-chr11-86993329-2	chr11	86992829	86993829	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005341, intron 1 of 4)	CpG	433.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21031969-5	chr19	21031501	21032501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72709.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	94.0	124.5	138.5	53.0	161.5	113.0
Merged-chr3-52047170-4	chr3	52046669	52047669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	57837.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117258879-2	chr8	117258379	117259379	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	1860.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35649978-2	chr2	35649478	35650478	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290641, intron 2 of 15)	intron (NM_001290641, intron 2 of 15)	27997.0	NM_001114124	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87275541-4	chr17	87275025	87276025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015506, intron 4 of 4)	intron (NR_015506, intron 4 of 4)	7289.0	NR_015506	74597.0	Mm.63783	NR_015506	ENSMUSG00000085287	4833418N02Rik	-	RIKEN cDNA 4833418N02 gene	ncRNA	43.0	70.5	64.0	66.0	114.5	94.0
Merged-chr5-140702952-2	chr5	140702452	140703452	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028833)	promoter-TSS (NM_028833)	-574.0	NM_001347517	74239.0	Mm.179704	NM_028833	ENSMUSG00000036555	Iqce	1700028P05Rik|mKIAA1023	IQ motif containing E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99243364-4	chr9	99242862	99243862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023873)	promoter-TSS (NM_023873)	21.0	NM_023873	68121.0	Mm.288739	NM_023873	ENSMUSG00000056267	Cep70	6720484E09Rik|Bite|C030018L16Rik	centrosomal protein 70	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148393326-4	chr2	148392846	148393846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2031.0	NM_009219	20608.0	Mm.35324	NM_009219	ENSMUSG00000037014	Sstr4	Smstr4|sst4	somatostatin receptor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-158062328-4	chr3	158061835	158062835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359763, intron 11 of 13)	intron (NM_001359763, intron 11 of 13)	25653.0	NM_001289524	67144.0	Mm.358704	NM_024194	ENSMUSG00000063052	Lrrc40	2610040E16Rik|AI837674	leucine rich repeat containing 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-116947102-2	chr8	116946602	116947602	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177700, intron 1 of 3)	intron (NM_177700, intron 1 of 3)	3709.0	NM_177700	234776.0	Mm.259736	NM_177700	ENSMUSG00000047388	Atmin	Asciz|gpg6|mKIAA0431	ATM interactor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107771112-4	chr9	107770597	107771597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148930)	promoter-TSS (NM_148930)	-95.0	NM_001359525	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	18.5	91.0	64.5	36.0	86.5	72.0
Merged-chr11-99231413-2	chr11	99230913	99231913	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020618)	promoter-TSS (NM_020618)	-396.0	NM_020618	57376.0	Mm.379086	NM_020618	ENSMUSG00000037935	Smarce1	2810417B20Rik|5830412H02Rik|9030408N19Rik|Baf27	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding	0.0	5.0	3.0	4.0	5.0	3.0
Merged-chr8-94838382-4	chr8	94837890	94838890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026452)	promoter-TSS (NM_026452)	-27.0	NM_026452	67914.0	Mm.169234	NM_026452	ENSMUSG00000031782	Coq9	2310005O14Rik|C78387	coenzyme Q9	protein-coding	122.5	234.0	272.0	124.0	290.5	192.5
Merged-chr11-115048457-4	chr11	115047952	115048952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199201).2	promoter-TSS (NM_199201).2	-157.0	NM_199201	382551.0	Mm.424732	NM_199201	ENSMUSG00000069607	Cd300ld3	AY457049|Cd300lh|Clm3|Lmir7|clm-3	CD300 molecule like family member D3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35318369-4	chr7	35317847	35318847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026181)	promoter-TSS (NM_026181)	93.0	NM_026181	67471.0	Mm.358705	NM_026181	ENSMUSG00000063808	Gpatch1	1300003A17Rik|ECGP|Gpatc1	G patch domain containing 1	protein-coding	26.5	22.5	41.0	8.0	15.0	35.5
Merged-chr5-66107901-2	chr5	66107401	66108401	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	MTC|LTR|ERVL-MaLR	-9722.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	15.5	66.5	41.0	10.0	74.0	33.5
Merged-chr11-97660417-4	chr11	97659921	97660921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2991.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	172.0	382.0	328.5	172.0	385.5	327.0
Merged-chr8-36993575-4	chr8	36993059	36994059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039220)	promoter-TSS (NM_001039220)	-16.0	NM_001039220	621080.0	Mm.373292	NM_001039220	ENSMUSG00000074384	AI429214	-	expressed sequence AI429214	protein-coding	22.5	32.5	26.0	11.0	51.0	34.5
Merged-chr17-6816399-4	chr17	6815899	6816899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33619.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126846317-4	chr8	126845805	126846805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2715.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	85.0	75.5	67.5	84.0	78.5	67.5
Merged-chr3-146445024-4	chr3	146444529	146445529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5438.0	NM_028836	74245.0	Mm.45396	NM_028836	ENSMUSG00000028189	Ctbs	2210401K11Rik|CTB	chitobiase, di-N-acetyl-	protein-coding	6.5	13.0	12.0	24.0	31.0	14.5
Merged-chr16-33251546-5	chr16	33251083	33252083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_080557, exon 1 of 14)	exon (NM_080557, exon 1 of 14)	127.0	NM_080557	69150.0	Mm.28196	NM_080557	ENSMUSG00000022808	Snx4	1810036H14Rik|AI037066	sorting nexin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131294177-4	chr1	131293696	131294696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 21 of 22)	intron (NM_001081011, intron 21 of 22)	-14633.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	10.0	11.0	16.0	3.5	4.0	16.0
Merged-chr17-27547427-4	chr17	27546920	27547920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9154.0	NM_001166536	15361.0	Mm.4438	NM_016660	ENSMUSG00000046711	Hmga1	AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy	high mobility group AT-hook 1	protein-coding	0.0	1.0	0.0	1.0	0.0	0.0
Merged-chr4-130787721-4	chr4	130787180	130788180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4857.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59647661-4	chr15	59647154	59648154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144549)	promoter-TSS (NM_144549)	-1000.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108937046-4	chr12	108936544	108937544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	42772.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84957798-4	chr17	84957289	84958289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159496)	promoter-TSS (NM_001159496)	-79.0	NR_027930	68531.0	Mm.249695	NR_027929	ENSMUSG00000097047	1110020A21Rik	2600015P10Rik	RIKEN cDNA 1110020A21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-31789079-4	chr18	31788571	31789571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357480)	promoter-TSS (NM_001357480)	-54.0	NM_001357480	69241.0	Mm.279898	NM_027002	ENSMUSG00000024258	Polr2d	2310002G05Rik|2610028L19Rik|HSRBP4|RBP4	polymerase (RNA) II (DNA directed) polypeptide D	protein-coding	7.5	24.5	26.0	7.5	21.5	26.0
Merged-chr7-19072343-4	chr7	19071839	19072839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031255, intron 5 of 5)	B1F|SINE|Alu	-3861.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	4.0	14.0	11.5	4.0	14.0	11.5
Merged-chr19-31834452-4	chr19	31833946	31834946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-34315.0	NM_001081074	69865.0	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43520545-4	chr19	43520044	43521044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010324, intron 1 of 8)	intron (NM_010324, intron 1 of 8)	4061.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	43.5	78.5	69.0	62.5	76.0	53.0
Merged-chr1-170898607-4	chr1	170898101	170899101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13061.0	NM_023173	80915.0	Mm.34365	NM_023173	ENSMUSG00000026659	Dusp12	1190004O14Rik|AA027408|AW049275|ESTM36|LMW-DSP4|T-DSP4|VH1|mVH1	dual specificity phosphatase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97179160-4	chr6	97178657	97179657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081111)	promoter-TSS (NM_001081111)	-33.0	NM_001081111	232286.0	Mm.30893	NM_001081111	ENSMUSG00000030059	Tmf1	7030402D04Rik|Gm153|Tmf1`	TATA element modulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78086786-4	chr10	78086278	78087278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17410.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53469233-4	chr4	53468735	53469735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133891, intron 1 of 15)	L1MB8|LINE|L1	28822.0	NM_133891	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	7.0	22.5	13.5	10.5	13.0	19.0
Merged-chr3-51333447-4	chr3	51332955	51333955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 1 of 9)	intron (NM_023502, intron 1 of 9)	7189.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85109284-2	chr12	85108784	85109784	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1549.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14207014-4	chr2	14206519	14207519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081310, intron 3 of 3)	intron (NM_001081310, intron 3 of 3)	-22395.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127513008-4	chr10	127512493	127513493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1946.0	NM_001098789	407790.0	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34783179-4	chr11	34782713	34783713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 1 of 51)	intron (NM_033374, intron 1 of 51)	692.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29624929-4	chr2	29624444	29625444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	5224.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-33936447-4	chr5	33935960	33936960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011914)	promoter-TSS (NM_011914)	-202.0	NM_011914	24116.0	Mm.332320	NM_011914	ENSMUSG00000029111	Nelfa	Whsc2|Whsc2h	negative elongation factor complex member A, Whsc2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131262449-4	chr2	131261956	131262956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355683)	promoter-TSS (NM_001355683)	-44.0	NM_001355683	74450.0	Mm.101264	NM_153501	ENSMUSG00000037514	Pank2	4933409I19Rik|AI642621	pantothenate kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91647047-4	chr16	91646559	91647559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178880)	promoter-TSS (NM_178880)	-87.0	NM_001357351	14450.0	Mm.4505	NM_010256	ENSMUSG00000022962	Gart	Gaps|Prgs	phosphoribosylglycinamide formyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-99224982-4	chr4	99224463	99225463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175029, intron 7 of 10)	intron (NM_175029, intron 7 of 10)	30816.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	6.0	4.5	14.5	1.5	3.0	8.5
Merged-chr11-53617399-4	chr11	53616890	53617890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027491)	promoter-TSS (NR_027491)	-52.0	NR_027491	16189.0	Mm.276360	NM_021283	ENSMUSG00000000869	Il4	BSF-1|Il-4	interleukin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84761888-1	chr12	84761388	84762388	+	1000.0	f0_balb.idr	intron (NM_023409, intron 2 of 3)	RSINE1|SINE|B4	11224.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67072077-4	chr10	67071566	67072566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 1 of 7)	intron (NM_178606, intron 1 of 7)	24922.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23761987-2	chr13	23761487	23762487	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178192)	promoter-TSS (NM_178192)	399.0	NM_013550	360198.0	Mm.221301	NM_013550	ENSMUSG00000069265	Hist1h3a	-	histone cluster 1, H3a	protein-coding	192.0	523.0	339.0	174.0	430.5	299.0
Merged-chr13-100832296-4	chr13	100831770	100832770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022885, intron 1 of 15)	intron (NM_022885, intron 1 of 15)	1157.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27043668-2	chr2	27043168	27044168	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15670.0	NM_001177627	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-52669677-4	chr5	52669176	52670176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172490)	promoter-TSS (NM_172490)	25.0	NM_172490	211006.0	Mm.244719	NM_172490	ENSMUSG00000029173	Sepsecs	AA986712|D5Ertd135e|SLA|SecS	Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase	protein-coding	15.0	46.0	33.0	42.0	46.0	46.5
Merged-chr15-74960102-2	chr15	74959588	74960588	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164036)	TTS (NM_001164036)	4982.0	NM_001164040	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	44.5	95.5	64.0	51.5	202.0	102.5
Merged-chr1-186749402-4	chr1	186748930	186749930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026041)	promoter-TSS (NM_026041)	-72.0	NM_026041	67223.0	Mm.289841	NM_026041	ENSMUSG00000001305	Rrp15	2810430M08Rik|5430437H21Rik	ribosomal RNA processing 15 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144245714-4	chr2	144245227	144246227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20475.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167253704-4	chr2	167253204	167254204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13167.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-117211596-4	chr13	117211103	117212103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8970.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	8.5	4.5	0.5	0.0	4.5	3.5
Merged-chr10-81266778-4	chr10	81266264	81267264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025317, intron 1 of 2)	CpG	162.0	NM_025317	66047.0	Mm.43397	NM_025317	ENSMUSG00000034932	Mrpl54	0610008M19Rik|D10Sut1e	mitochondrial ribosomal protein L54	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120427239-2	chr8	120426739	120427739	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61627.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43218339-4	chr5	43217842	43218842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 1 of 7)	intron (NR_028417, intron 1 of 7)	-15121.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130171708-4	chr5	130171209	130172209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199059)	promoter-TSS (NM_001199059)	-110.0	NM_001199059	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44857258-4	chr7	44856750	44857750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290767)	promoter-TSS (NM_001290767)	104.0	NM_001290766	59047.0	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-61403429-2	chr3	61402929	61403929	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25A|LTR|ERVK	38922.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-105300755-3	chr14	105300260	105301260	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029561, intron 5 of 7)	intron (NM_029561, intron 5 of 7)	42087.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	3.5	7.5	4.5	24.5	81.5	60.0
Merged-chr13-49181226-2	chr13	49180726	49181726	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6321.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4000274-4	chr19	3999793	4000793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025529)	promoter-TSS (NM_025529)	-287.0	NM_025529	66387.0	Mm.259222	NM_025529	ENSMUSG00000110949	Nudt8	2310039H17Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35117542-4	chr9	35117021	35118021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009178)	promoter-TSS (NM_009178)	-657.0	NM_009178	20443.0	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	SIAT4-C|ST3Gal IV|ST3GalIV|Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	14.0	24.5	14.0	8.5	28.5	22.0
Merged-chr7-98703548-3	chr7	98703047	98704047	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_144495)	promoter-TSS (NR_144495)	300.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	9.5	34.5	8.0	4.5	23.5	17.0
Merged-chr5-125177919-4	chr5	125177377	125178377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253905, intron 1 of 42)	CpG	1337.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92180878-2	chr1	92180377	92181377	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_207225)	promoter-TSS (NM_207225)	-536.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109750866-4	chr8	109750374	109751374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13135.0	NM_001080930	52335.0	Mm.276770	NM_001080930	ENSMUSG00000069895	Atxn1l	AW558552|Boat|C330011L24Rik|D6Mgi37|D8Ertd587e	ataxin 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-142391166-4	chr6	142390675	142391675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025872, intron 1 of 4)	intron (NM_025872, intron 1 of 4)	3932.0	NM_025872	66964.0	Mm.3676	NM_025872	ENSMUSG00000030245	Golt1b	2310061A22Rik|AA407874|AU024291|CGI-141	golgi transport 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41335023-2	chr19	41334523	41335523	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	B2_Mm1t|SINE|B2	50047.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	28.5	80.0	56.5	20.0	44.5	33.0
Merged-chr9-119365435-4	chr9	119364928	119365928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359699, intron 3 of 17)	B3A|SINE|B2	8047.0	NM_001359699	102448.0	Mm.219497	NM_001033209	ENSMUSG00000035769	Xylb	AI132223|AI327421	xylulokinase homolog (H. influenzae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-47991143-4	chr8	47990661	47991661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133791)	promoter-TSS (NM_133791)	-610.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140795420-3	chr5	140794913	140795913	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 1 of 3)	intron (NM_010302, intron 1 of 3)	35018.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-63176208-2	chr1	63175708	63176708	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018796)	promoter-TSS (NM_018796)	614.0	NM_145518	227197.0	Mm.290791	NM_145518	ENSMUSG00000025968	Ndufs1	5830412M15Rik|9930026A05Rik	NADH dehydrogenase (ubiquinone) Fe-S protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12755289-4	chr17	12754792	12755792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010515, intron 1 of 47)	intron (NM_010515, intron 1 of 47)	13981.0	NR_027784	104103.0	Mm.26553	NR_002853	ENSMUSG00000078247	Airn	2810051F02Rik|2810434M15Rik|AI256653|AI597500|AW049873|Air|B930018I07Rik|D17Ertd663e|IGF2RAS	antisense Igf2r RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72219819-4	chr5	72219313	72220313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 1 of 22)	intron (NR_003966, intron 1 of 22)	16470.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32181425-4	chr19	32180909	32181909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	29604.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3155466-5	chr11	3155043	3156043	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 12 of 32)	intron (NM_030207, intron 12 of 32)	31522.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-78577354-4	chr16	78576858	78577858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252440)	promoter-TSS (NM_001252440)	-670.0	NM_025967	67102.0	Mm.37332	NM_025967	ENSMUSG00000022864	D16Ertd472e	1700010I10Rik|2310009O17Rik|E330003K22Rik|Eurl	DNA segment, Chr 16, ERATO Doi 472, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-92875180-4	chr7	92874677	92875677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028243)	promoter-TSS (NM_028243)	-76.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62479947-4	chr4	62479445	62480445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138653)	promoter-TSS (NM_138653)	-122.0	NM_138653	192120.0	Mm.29808	NM_138653	ENSMUSG00000028392	Bspry	-	B-box and SPRY domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-129331976-4	chr7	129331469	129332469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080963, intron 5 of 6)	intron (NM_001080963, intron 5 of 6)	74875.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123923690-4	chr9	123923209	123924209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	44983.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98588292-4	chr11	98587797	98588797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1052.0	NM_025661	66612.0	Mm.180546	NM_025661	ENSMUSG00000038150	Ormdl3	2810011N17Rik|AI315223	ORM1-like 3 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55209656-2	chr13	55209156	55210156	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008739)	promoter-TSS (NM_008739)	-126.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-103758703-4	chr5	103758215	103759215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080798, intron 1 of 19)	AT_rich|Low_complexity|Low_complexity	4142.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167060513-4	chr2	167060012	167061012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033196, intron 1 of 13)	intron (NM_001033196, intron 1 of 13)	-2422.0	NR_138563	68949.0	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10895177-4	chr19	10894681	10895681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253843)	promoter-TSS (NM_001253843)	-50.0	NM_134129	28000.0	Mm.491104	NM_134129	ENSMUSG00000024735	Prpf19	AA617263|AL024362|D19Wsu55e|NMP200|PSO4|Prp19|Snev	pre-mRNA processing factor 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-87413455-4	chr12	87412964	87413964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24293.0	NR_037228	100526546.0		NR_037228	ENSMUSG00000105428	Mir3068	mir-3068|mmu-mir-3068	microRNA 3068	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68738738-2	chr10	68738238	68739238	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 1 of 5)	MTA_Mm|LTR|ERVL-MaLR	14992.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19326564-4	chr7	19326056	19327056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16511.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110446496-4	chr12	110445941	110446941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001135001)	promoter-TSS (NM_001135001)	-738.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37478824-2	chr1	37478324	37479324	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 5 of 15)	intron (NM_173870, intron 5 of 15)	9781.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-20076834-4	chr3	20076354	20077354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355097, intron 10 of 25)	B2_Mm2|SINE|B2	18563.0	NR_105047	20585.0	Mm.209650	NM_009210	ENSMUSG00000002428	Hltf	AF010600|BC057116|P113|Smarca3|Snf2l3	helicase-like transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90220613-4	chr16	90220105	90221105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011434)	promoter-TSS (NM_011434)	-137.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118478488-2	chr11	118477988	118478988	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153103, intron 1 of 13)	intron (NR_153103, intron 1 of 13)	1656.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-20297008-4	chr8	20296533	20297533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030708, intron 1 of 4)	CpG	399.0	NR_030708	547150.0	Mm.359054	NR_030708	ENSMUSG00000071796	6820431F20Rik	-	cadherin 11 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55555677-2	chr19	55555177	55556177	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	146527.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35732215-4	chr2	35731720	35732720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35488.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126890837-4	chr8	126890320	126891320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41800.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-61983537-4	chr15	61983024	61984024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1817.0	NM_001177354	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83008799-4	chr6	83008293	83009293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 7 of 9)	intron (NM_033079, intron 7 of 9)	24678.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	72.0	170.0	129.5	65.5	117.0	124.0
Merged-chr9-105642957-4	chr9	105642447	105643447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081309)	promoter-TSS (NM_001081309)	-48.0	NM_001081309	75669.0	Mm.274830	NM_029380	ENSMUSG00000032571	Pik3r4	2210010O15Rik|C730038E05Rik|C85833|D9Ertd418e|Vps15|p150	phosphoinositide-3-kinase regulatory subunit 4	protein-coding	53.5	93.5	89.0	41.0	112.5	114.0
Merged-chr2-77197296-4	chr2	77196793	77197793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175465, intron 12 of 17)	intron (NM_175465, intron 12 of 17)	-26658.0	NM_001025576	545428.0	Mm.26579	NM_001025576	ENSMUSG00000044033	Ccdc141	2610301F02Rik|CAMDI	coiled-coil domain containing 141	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85973733-4	chr12	85973221	85974221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	105320.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102469218-2	chr15	102468718	102469718	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1414.0	NM_011042	18521.0	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141873860-3	chr4	141873382	141874382	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	1038.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	36.5	64.0	77.0	28.0	103.0	76.5
Merged-chr14-47361936-7	chr14	47361391	47362391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-11969.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	269.5	691.0	456.0	102.0	188.5	153.5
Merged-chr4-152178077-4	chr4	152177568	152178568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133348)	promoter-TSS (NM_133348)	-32.0	NM_133348	70025.0	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8888486-4	chr4	8888003	8889003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137179.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24608287-4	chr7	24607795	24608795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023154, intron 6 of 7)	intron (NM_023154, intron 6 of 7)	-3033.0	NM_001102613	232970.0	Mm.333663	NM_001102613	ENSMUSG00000074277	Phldb3	EG232970|Gm10102	pleckstrin homology like domain, family B, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-63255829-4	chr13	63255273	63256273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	15744.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28376516-4	chr7	28375998	28376998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011756)	TTS (NM_011756)	2730.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	19.0	66.5	58.0	22.5	103.0	63.0
Merged-chr5-9073405-2	chr5	9072905	9073905	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27332.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27194519-2	chr3	27194019	27195019	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	PB1D10|SINE|Alu	11515.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36065032-4	chr1	36064537	36065537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3363.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-49429281-4	chr17	49428775	49429775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020042, intron 1 of 10)	intron (NM_020042, intron 1 of 10)	911.0	NM_020042	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156415867-4	chr2	156415364	156416364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	-5045.0	NM_001291122	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	38.5	73.0	49.0	36.0	69.0	51.0
Merged-chr13-110394975-4	chr13	110394419	110395419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152804)	promoter-TSS (NM_152804)	-125.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	34.5	201.5	118.5	38.5	166.0	143.5
Merged-chr17-47441534-4	chr17	47441034	47442034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145489, intron 1 of 4)	MER5A1|DNA|hAT-Charlie	-4159.0	NM_029296	75462.0	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	5.5	2.5	3.5	2.5	4.0	2.5
Merged-chr3-95217290-4	chr3	95216767	95217767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_108026)	promoter-TSS (NR_108026)	-190.0	NR_108026	100504029.0	Mm.478537	NR_108026	ENSMUSG00000097167	Gm16740	-	predicted gene, 16740	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-55751327-4	chr17	55750813	55751813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139138, intron 1 of 16)	intron (NM_139138, intron 1 of 16)	1329.0	NM_139138	52614.0	Mm.210497	NM_139138	ENSMUSG00000032915	Adgre4	D17Ertd479e|Egf-tm7|Emr4|Fire|Gpr127	adhesion G protein-coupled receptor E4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20744404-2	chr18	20743904	20744904	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 1 of 8)	(CACAC)n|Simple_repeat|Simple_repeat	2000.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21947121-4	chr10	21946625	21947625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 2 of 13)	intron (NM_001161845, intron 2 of 13)	-31547.0	NM_001161847	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-68258957-4	chr15	68258445	68259445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145888)	promoter-TSS (NM_001145888)	-89.0	NM_198644	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	40.0	152.0	84.5	56.0	119.0	122.5
Merged-chr8-108886850-4	chr8	108886345	108887345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 4 of 9)	intron (NM_007496, intron 4 of 9)	-50015.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	4.5	3.0	6.5	6.0	16.0	6.0
Merged-chr6-17622132-4	chr6	17621642	17622642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14868.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	8.0	1.5	6.5	6.0	17.5	7.0
Merged-chr2-152332575-4	chr2	152332060	152333060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083921)	promoter-TSS (NM_001083921)	79.0	NM_019705	24105.0	Mm.182145	NM_019705	ENSMUSG00000027466	Rbck1	AL033326|HOIL-1|HOIL-1L|UIP28|Ubce7ip3	RanBP-type and C3HC4-type zinc finger containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25302514-2	chr15	25302014	25303014	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111250.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54812947-4	chr11	54812453	54813453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6966.0	NR_040284	432562.0	Mm.406948	NR_040284	ENSMUSG00000086789	Lyrm7os	Gm12228	LYR motif containing 7, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98352556-2	chr7	98352056	98353056	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001168539, exon 2 of 2)	exon (NM_001168539, exon 2 of 2)	8732.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113634412-3	chr5	113633912	113634912	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	9191.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81601045-4	chr10	81600556	81601556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346695)	promoter-TSS (NM_001346695)	-156.0	NM_001346695	114606.0	Mm.206764	NM_053254	ENSMUSG00000034758	Tle6	1810057E06Rik|Grg6	transducin-like enhancer of split 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25706994-4	chr7	25706498	25707498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12055.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-95914284-4	chr5	95913771	95914771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42668.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-33401402-4	chr6	33400897	33401897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347089, intron 7 of 9)	Lx8b|LINE|L1	152269.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-48818020-4	chr6	48817509	48818509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22979.0	NM_023056	65963.0	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17928805-4	chr16	17928302	17929302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153150)	promoter-TSS (NM_153150)	-583.0	NM_153150	13358.0	Mm.229291	NM_153150	ENSMUSG00000003528	Slc25a1	1300019P08Rik|2610100G11Rik|AI194714|Ctp|Dgsj|Slc20a3	solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-75449094-4	chr12	75448617	75449617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32336.0	NM_175644	217674.0	Mm.252250	NM_175644	ENSMUSG00000048982	Gphb5	OGH|Zlut1	glycoprotein hormone beta 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-133094518-4	chr3	133093997	133094997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027927, intron 1 of 6)	intron (NM_027927, intron 1 of 6)	-2458.0	NM_001356309	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98744920-2	chr10	98744420	98745420	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-169722.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122854787-4	chr6	122854284	122855284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009779, intron 1 of 1)	intron (NM_009779, intron 1 of 1)	1373.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-87842304-4	chr10	87841814	87842814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15951.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125219159-4	chr6	125218660	125219660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080557, intron 3 of 3)	intron (NM_001080557, intron 3 of 3)	3579.0	NM_009496	22317.0	Mm.32321	NM_009496	ENSMUSG00000030337	Vamp1	Syb-1|Syb1|VAMP-1|lew	vesicle-associated membrane protein 1	protein-coding	0.5	5.5	3.0	0.0	1.0	0.0
Merged-chr5-149635960-2	chr5	149635460	149636460	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347534, intron 1 of 16)	CpG	355.0	NM_013559	15505.0	Mm.270681	NM_013559	ENSMUSG00000029657	Hsph1	105kDa|AI790491|Hsp105|Hsp110|hsp-E7I|hsp110/105	heat shock 105kDa/110kDa protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154613440-4	chr2	154612947	154613947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199304)	promoter-TSS (NM_199304)	79.0	NM_199304	228807.0	Mm.103555	NM_199304	ENSMUSG00000059842	Zfp341	Znf341	zinc finger protein 341	protein-coding	12.5	77.0	86.5	19.5	18.0	30.0
Merged-chr3-131564677-4	chr3	131564196	131565196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011863)	promoter-TSS (NM_011863)	-72.0	NM_001289479	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105910654-4	chr3	105910164	105911164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	6243.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53144393-2	chr4	53143893	53144893	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	15502.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.5	0.0	0.5	0.0	2.0	0.0
Merged-chr9-57561118-7	chr9	57560610	57561610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_022813, exon 1 of 9)	exon (NM_022813, exon 1 of 9)	166.0	NM_022813	24044.0	Mm.286069	NM_022813	ENSMUSG00000040188	Scamp2	AI875466|Sc2	secretory carrier membrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41369968-4	chr19	41369476	41370476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	15094.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	7.5	11.0	11.5	32.0	19.0	32.5
Merged-chr5-135772714-4	chr5	135772205	135773205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029659, intron 1 of 8)	intron (NM_029659, intron 1 of 8)	5596.0	NM_001289554	76571.0	Mm.247666	NM_029659	ENSMUSG00000019178	Styxl1	1700011C14Rik|Dusp24|Mkstyx	serine/threonine/tyrosine interacting-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69157757-4	chr3	69157256	69158256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_126533)	TTS (NR_126533)	26523.0	NR_126533	381452.0	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	9.5	12.5	16.0	8.0	20.0	17.5
Merged-chr2-155381806-4	chr2	155381282	155382282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178111)	promoter-TSS (NM_178111)	-74.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	121.5	340.5	259.0	163.0	273.0	194.0
Merged-chr6-140619927-4	chr6	140619405	140620405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2758.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69296764-4	chr12	69296276	69297276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027117)	promoter-TSS (NM_027117)	95.0	NM_027117	69554.0	Mm.234368	NM_027117	ENSMUSG00000020978	Klhdc2	2310022K15Rik|D12Ertd522e|HCLP-1|LCP	kelch domain containing 2	protein-coding	15.0	80.5	56.5	21.5	53.0	39.0
Merged-chr14-105435426-4	chr14	105434916	105435916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045859, intron 2 of 2)	intron (NR_045859, intron 2 of 2)	7857.0	NR_045859	71362.0	Mm.410781	NR_045859	ENSMUSG00000115548	5430440P10Rik	-	RIKEN cDNA 5430440P10 gene	ncRNA	3.0	12.5	10.0	4.5	7.0	22.0
Merged-chr2-165056000-2	chr2	165055500	165056500	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027852, intron 1 of 7)	intron (NR_027852, intron 1 of 7)	364.0	NM_011611	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	3.5	16.0	0.5	0.0	0.5	1.5
Merged-chr6-42396613-4	chr6	42396104	42397104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3634.0	NM_001001452	387514.0	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44997655-4	chr7	44997140	44998140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016849)	promoter-TSS (NM_016849)	-8.0	NR_045611	54131.0	Mm.3960	NM_016849	ENSMUSG00000003184	Irf3	C920001K05Rik|IRF-3	interferon regulatory factor 3	protein-coding	55.5	81.5	60.0	31.5	127.5	55.0
Merged-chr7-44357065-2	chr7	44356565	44357565	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001034115, exon 25 of 25)	exon (NM_001034115, exon 25 of 25)	17965.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146271314-3	chr6	146270804	146271804	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 37 of 56)	intron (NM_019923, intron 37 of 56)	230919.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49854316-4	chr16	49853827	49854827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1327.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122432975-4	chr8	122432484	122433484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007806)	promoter-TSS (NM_007806)	-44.0	NM_007806	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	34.0	88.0	48.0	40.0	91.5	48.0
Merged-chr14-73381276-2	chr14	73380776	73381776	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008410, intron 1 of 5)	intron (NM_008410, intron 1 of 5)	4013.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153161303-4	chr2	153160803	153161803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133847)	promoter-TSS (NM_133847)	2.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115845133-4	chr5	115844648	115845648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007708)	promoter-TSS (NM_007708)	-508.0	NM_007708	12704.0	Mm.8321	NM_007708	ENSMUSG00000029516	Cit	C030025P15Rik|CRIK|CRIK-SK|Cit-k	citron	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141475381-6	chr7	141474899	141475899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252588)	promoter-TSS (NM_001252588)	163.0	NM_053082	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38171516-4	chr16	38171026	38172026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 3 of 11)	intron (NM_001347232, intron 3 of 11)	-82266.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61715282-4	chr10	61714758	61715758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284300)	promoter-TSS (NM_001284300)	-5.0	NM_178058	71361.0	Mm.286309	NM_153779	ENSMUSG00000020085	Aifm2	5430437E11Rik|Amid|D730001I10Rik|PRG3	apoptosis-inducing factor, mitochondrion-associated 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18426478-4	chr16	18425975	18426975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013711)	promoter-TSS (NM_013711)	58.0	NM_013711	26462.0	Mm.390906	NM_013711	ENSMUSG00000075704	Txnrd2	AA118373|ESTM573010|TGR|Tr3|Trxr2|Trxrd2	thioredoxin reductase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-38929122-4	chr12	38928613	38929613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	145402.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71377636-4	chr2	71377151	71378151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10097.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30009105-4	chr16	30008615	30009615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033631, intron 1 of 2)	CpG	448.0	NR_033631	100043102.0	Mm.30797	NR_033631	ENSMUSG00000097184	4632428C04Rik	Gm4231	RIKEN cDNA 4632428C04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118795195-4	chr10	118794684	118795684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73719.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-81712612-4	chr17	81712115	81713115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	25772.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-117868977-4	chr3	117868503	117869503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029655)	promoter-TSS (NM_029655)	-67.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	19.0	57.0	64.5	33.5	77.5	56.5
Merged-chr11-19925581-4	chr11	19925082	19926082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	CpG	1140.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110407302-2	chr9	110406802	110407802	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081043, intron 1 of 24)	intron (NM_001081043, intron 1 of 24)	908.0	NM_001081043	104831.0	Mm.335477	NM_001081043	ENSMUSG00000036057	Ptpn23	AI462446|PTP-TD14	protein tyrosine phosphatase, non-receptor type 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-145576235-4	chr3	145575728	145576728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346521)	promoter-TSS (NM_001346521)	12.0	NM_001346521	229937.0	Mm.24586	NM_001081094	ENSMUSG00000074182	Znhit6	2410019A14Rik	zinc finger, HIT type 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8817408-2	chr10	8816908	8817908	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	(TG)n|Simple_repeat|Simple_repeat	68662.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.5	3.5	10.0	3.0	4.5	3.5
Merged-chr11-59209282-4	chr11	59208751	59209751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024210, intron 4 of 6)	intron (NM_024210, intron 4 of 6)	890.0	NM_024210	67862.0	Mm.358708	NM_024210	ENSMUSG00000020441	2310033P09Rik	Mmtag2	RIKEN cDNA 2310033P09 gene	protein-coding	33.5	78.0	49.5	48.5	102.5	40.0
Merged-chr4-11966582-4	chr4	11966079	11967079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040577)	promoter-TSS (NR_040577)	5.0	NR_040577	100503636.0	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31408038-4	chr14	31407538	31408538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	9639.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41368450-4	chr4	41367970	41368970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355508, intron 2 of 6)	intron (NM_001355508, intron 2 of 6)	16507.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-51920605-4	chr15	51920097	51921097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43156.0	NM_030132	78581.0	Mm.176347	NM_030132	ENSMUSG00000022313	Utp23	1700010I21Rik|AI662478|BB238373|D530033C11Rik	UTP23 small subunit processome component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-82652625-4	chr6	82652119	82653119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025882, intron 1 of 3)	CpG	246.0	NM_025882	66979.0	Mm.195753	NM_025882	ENSMUSG00000030042	Pole4	2400007P05Rik|5830430F06Rik	polymerase (DNA-directed), epsilon 4 (p12 subunit)	protein-coding	12.0	9.0	28.0	11.0	23.5	15.0
Merged-chr3-79239382-4	chr3	79238887	79239887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045502, intron 1 of 2)	intron (NR_045502, intron 1 of 2)	26468.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	9.5	44.5	26.5	30.5	41.0	18.5
Merged-chr19-12463899-4	chr19	12463405	12464405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010821, exon 2 of 2)	3' UTR (NM_010821, exon 2 of 2)	3126.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	270.0	664.0	511.0	229.5	615.5	521.0
Merged-chr7-99091404-4	chr7	99090914	99091914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 4 of 14)	intron (NM_178635, intron 4 of 14)	49730.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	7.5	10.0	6.5	17.5	19.5	15.0
Merged-chr7-16405762-1	chr7	16405262	16406262	+	1000.0	f0_balb.idr	intron (NM_198631, intron 1 of 13)	intron (NM_198631, intron 1 of 13)	4566.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85599706-4	chr12	85599199	85600199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205053)	promoter-TSS (NM_001205053)	283.0	NM_030887	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75924934-3	chr18	75924445	75925445	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145356, intron 2 of 4)	intron (NM_145356, intron 2 of 4)	104767.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	2.5	10.0	16.0	6.5	3.5	2.5
Merged-chr16-90187672-4	chr16	90187169	90188169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33073.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98342764-4	chr11	98342268	98343268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5638.0	NM_144828	19049.0	Mm.45372	NM_144828	ENSMUSG00000061718	Ppp1r1b	AU040756|DARPP-32|Darpp32	protein phosphatase 1, regulatory (inhibitor) subunit 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25920042-4	chr17	25919546	25920546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139154)	promoter-TSS (NM_139154)	-332.0	NM_139154	224624.0	Mm.328872	NM_139154	ENSMUSG00000025730	Rab40c	RAR3	Rab40C, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75985247-4	chr2	75984724	75985724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3257.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118798384-4	chr7	118797839	118798839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027815, intron 19 of 30)	RSINE1|SINE|B4	57274.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	88.0	221.0	187.0	102.0	234.5	164.5
Merged-chr3-137947733-4	chr3	137947253	137948253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 4 of 8)	intron (NM_011932, intron 4 of 8)	29198.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76224803-4	chr16	76224309	76225309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102196.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-108669238-4	chr5	108668747	108669747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_174870)	TTS (NM_174870)	5549.0	NM_001310692	231583.0	Mm.440571	NM_174870	ENSMUSG00000046959	Slc26a1	Sat1	solute carrier family 26 (sulfate transporter), member 1	protein-coding	226.0	389.5	393.5	249.5	404.0	298.5
Merged-chr4-48043429-4	chr4	48042853	48043853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1952.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119355471-4	chr11	119354978	119355978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018822)	promoter-TSS (NM_018822)	32.0	NM_018822	27029.0	Mm.103788	NM_018822	ENSMUSG00000005043	Sgsh	4632406A19Rik	N-sulfoglucosamine sulfohydrolase (sulfamidase)	protein-coding	86.0	194.5	206.0	53.5	143.0	185.5
Merged-chr2-91196918-4	chr2	91196407	91197407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1791.0	NM_001177730	22259.0	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-110619891-4	chr8	110619390	110620390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151675, intron 1 of 17)	MER3|DNA|hAT-Charlie	1323.0	NR_151675	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44767328-1	chr9	44766828	44767828	+	1000.0	f0_balb.idr	intron (NM_145985, intron 1 of 9)	CpG	480.0	NM_145985	213827.0	Mm.371682	NM_145985	ENSMUSG00000032096	Arcn1	4632432M07Rik|nur17	archain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157501547-4	chr2	157501040	157502040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58538.0	NM_001291129	18111.0	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	4.5	18.0	6.5	1.0	11.0	6.5
Merged-chr17-71264952-4	chr17	71264422	71265422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357338, intron 4 of 7)	intron (NM_001357338, intron 4 of 7)	46089.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	0.5	6.0	4.5	22.0	38.0	16.5
Merged-chr1-144243171-2	chr1	144242671	144243671	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5933.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30916266-4	chr5	30915746	30916746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133918, intron 3 of 7)	intron (NM_133918, intron 3 of 7)	2460.0	NM_133918	100952.0	Mm.286375	NM_133918	ENSMUSG00000029163	Emilin1	5830419M17Rik|AW229038|BB105748|EMILIN-1|gp115	elastin microfibril interfacer 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52993408-4	chr2	52992918	52993918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	135550.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-42328739-4	chr13	42328241	42329241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27265.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-53607274-4	chr8	53606807	53607807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146208, intron 5 of 9)	intron (NM_146208, intron 5 of 9)	31758.0	NM_146208	234258.0	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81136342-6	chr10	81135777	81136777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010731)	promoter-TSS (NM_010731)	6.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125382491-1	chr6	125381991	125382991	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-1987.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0.0	0.0	1.5	0.0	0.0	1.5
Merged-chr15-50855178-4	chr15	50854671	50855671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032000, intron 1 of 5)	ORR1F|LTR|ERVL-MaLR	33878.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	4.5	15.5	6.5	0.0	5.0	1.0
Merged-chr3-94490865-2	chr3	94490365	94491365	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151857, intron 11 of 11)	intron (NR_151857, intron 11 of 11)	6507.0	NR_151857	78784.0	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|ETR-1|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76762053-4	chr16	76761540	76762540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155453, intron 1 of 3)	intron (NR_155453, intron 1 of 3)	17052.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29368617-4	chr19	29368092	29369092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 1 of 6)	intron (NM_021893, intron 1 of 6)	1154.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82855827-4	chr18	82855325	82856325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_125720)	promoter-TSS (NR_125720)	-72.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93071579-4	chr1	93071089	93072089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294150, intron 9 of 46)	intron (NM_001294150, intron 9 of 46)	10891.0	NM_001294150	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73645771-4	chr15	73645277	73646277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-21033.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50896859-2	chr14	50896359	50897359	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3604.0	NM_001166651	546611.0	Mm.390692	NM_001166651	ENSMUSG00000090799	Klhl33	EG546611	kelch-like 33	protein-coding	4.5	14.5	4.0	5.5	25.5	13.0
Merged-chr3-20155668-4	chr3	20155181	20156181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013755)	promoter-TSS (NM_013755)	-565.0	NM_013755	27357.0	Mm.6375	NM_013755	ENSMUSG00000019528	Gyg	AU017667|GN1|Gyg1	glycogenin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32950409-4	chr19	32949900	32950900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	192823.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106367843-4	chr9	106367341	106368341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153459)	promoter-TSS (NM_153459)	-791.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	41.0	135.0	94.5	65.0	98.0	58.5
Merged-chr6-97429931-4	chr6	97429421	97430421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	MTD|LTR|ERVL-MaLR	29365.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157566802-4	chr2	157566309	157567309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016916)	promoter-TSS (NM_016916)	-448.0	NM_016916	53619.0	Mm.480461	NM_016916	ENSMUSG00000067787	Blcap	AI462828|Bc10	bladder cancer associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62868770-2	chr9	62868270	62869270	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_138304, exon 3 of 5)	exon (NM_138304, exon 3 of 5)	-6746.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136140236-4	chr1	136139770	136140770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	8880.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30593895-4	chr14	30593411	30594411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16399.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	117.0	163.5	143.0	111.0	230.5	160.0
Merged-chr18-84719659-2	chr18	84719159	84720159	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173770)	promoter-TSS (NM_173770)	-485.0	NM_173770	240479.0	Mm.472378	NM_173770	ENSMUSG00000047992	Fam69c	B230399E16Rik	family with sequence similarity 69, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32134579-2	chr5	32134079	32135079	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-1893.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94802540-4	chr8	94802033	94803033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-7920.0	NM_011332	20295.0	Mm.41988	NM_011332	ENSMUSG00000031780	Ccl17	Abcd-2|Scya17|Scya17l|Tarc	chemokine (C-C motif) ligand 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-110943188-4	chr13	110942671	110943671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39325.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-40754795-4	chr11	40754305	40755305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009831, intron 1 of 5)	intron (NM_009831, intron 1 of 5)	481.0	NM_009831	12450.0	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	1.0	0.5	1.0	0.0	0.0	0.0
Merged-chr8-126839280-1	chr8	126838780	126839780	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-9740.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-53999207-4	chr5	53998716	53999716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	693.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-127561736-4	chr6	127561241	127562241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-16234.0	NM_001033464	381812.0	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-52528991-2	chr18	52528491	52529491	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010728, exon 1 of 7)	exon (NM_010728, exon 1 of 7)	730.0	NM_001286181	16948.0	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103606789-1	chr2	103606289	103607289	+	1000.0	f0_balb.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	40479.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-117319846-4	chr3	117319349	117320349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177664, exon 7 of 7)	3' UTR (NM_177664, exon 7 of 7)	41027.0	NM_177664	229791.0	Mm.140138	NM_177664	ENSMUSG00000044667	Plppr4	A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455	phospholipid phosphatase related 4	protein-coding	1.0	21.5	21.0	12.5	18.5	10.5
Merged-chr9-40581962-4	chr9	40581504	40582504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50621.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	80.5	203.0	132.0	53.0	186.5	138.0
Merged-chr17-26605784-4	chr17	26605279	26606279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	44267.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	13.5	50.5	21.0	18.5	111.0	46.0
Merged-chr6-141066024-4	chr6	141065521	141066521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	-183248.0	NM_018779	54611.0	Mm.103728	NM_018779	ENSMUSG00000041741	Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90283744-4	chr16	90283245	90284245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346799, intron 1 of 19)	CpG	741.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31038577-4	chr17	31038081	31039081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19113.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	21.5	33.5	41.5	15.5	52.5	31.5
Merged-chr4-40244286-4	chr4	40243765	40244765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57E2|LTR|ERV1	-4440.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13500687-4	chr10	13500218	13501218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330198)	promoter-TSS (NM_001330198)	-310.0	NM_001330198	66848.0	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-99485395-4	chr6	99484921	99485921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347345, intron 1 of 19)	intron (NM_001347345, intron 1 of 19)	35572.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118203660-2	chr11	118203160	118204160	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	9082.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127021217-2	chr7	127020717	127021717	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102563)	promoter-TSS (NM_001102563)	-6.0	NM_001102563	69017.0	Mm.392047	NM_001102563	ENSMUSG00000045114	Prrt2	1500031I19Rik|AI195361|DSPB3	proline-rich transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11178225-2	chr16	11177725	11178725	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151506)	promoter-TSS (NR_151506)	49.0	NR_151506	105246071.0	Mm.426799	NR_151506		4930509G22Rik	-	RIKEN cDNA 4930509G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4239370-4	chr7	4238875	4239875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081239, intron 4 of 5)	intron (NM_001081239, intron 4 of 5)	1621.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	34.0	71.5	60.0	26.5	80.0	61.0
Merged-chr16-94609388-4	chr16	94608895	94609895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-2024.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87376846-4	chr3	87376332	87377332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136236, intron 1 of 8)	intron (NM_001136236, intron 1 of 8)	445.0	NM_178165	229499.0	Mm.255203	NM_153090	ENSMUSG00000059994	Fcrl1	A230020G22Rik|Bxmas1|Bxmh1|Bxmh1b|Fcrh1|Fcrh1l|Fcrh1s|Ifgp1	Fc receptor-like 1	protein-coding	25.0	94.5	103.5	1.0	18.5	7.0
Merged-chr9-88733334-2	chr9	88732834	88733834	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16B2|LTR|ERVL	-1484.0	NM_007536	12047.0	Mm.378888	NM_007536	ENSMUSG00000099974	Bcl2a1d	A1-d	B cell leukemia/lymphoma 2 related protein A1d	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73596073-4	chr15	73595584	73596584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357747, intron 2 of 7)	intron (NM_001357747, intron 2 of 7)	442.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120518318-4	chr5	120517813	120518813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 2 of 13)	intron (NM_001177595, intron 2 of 13)	7121.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38105652-4	chr16	38105142	38106142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 1 of 11)	intron (NM_001347232, intron 1 of 11)	-16382.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	16.0	13.5	27.0	13.0	41.5	12.0
Merged-chr10-120220174-4	chr10	120219683	120220683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026617, intron 3 of 6)	intron (NM_026617, intron 3 of 6)	-6877.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6259332-4	chr2	6258829	6259829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 3 of 6)	MTC|LTR|ERVL-MaLR	-46335.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62509370-4	chr10	62508889	62509889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 1 of 3)	MTE2a|LTR|ERVL-MaLR	-1632.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27725198-4	chr15	27724705	27725705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43663.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128063500-4	chr7	128062984	128063984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008401, intron 1 of 29)	intron (NM_008401, intron 1 of 29)	844.0	NM_008401	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148164264-4	chr4	148163743	148164743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_176848, exon 2 of 6)	exon (NM_176848, exon 2 of 6)	3575.0	NM_176848	230904.0	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106958391-4	chr8	106957898	106958898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009229, intron 1 of 6)	intron (NM_009229, intron 1 of 6)	22648.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114917289-4	chr11	114916778	114917778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17108.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27675300-4	chr15	27674796	27675796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	6246.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73598441-4	chr12	73597940	73598940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	13644.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28386187-4	chr7	28385671	28386671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026042, exon 4 of 4)	3' UTR (NM_026042, exon 4 of 4)	6519.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96829540-4	chr11	96829049	96830049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130450)	promoter-TSS (NM_001130450)	-47.0	NM_001130450	18023.0	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	33.5	62.0	64.5	35.5	95.0	33.5
Merged-chr3-65930471-3	chr3	65929979	65930979	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27770.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	41.0	146.5	59.5	56.5	150.5	108.5
Merged-chr4-46485833-4	chr4	46485313	46486313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3516.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141327682-4	chr7	141327177	141328177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282076)	promoter-TSS (NM_001282076)	48.0	NM_016874	54006.0	Mm.28392	NM_016874	ENSMUSG00000058886	Deaf1	AU042387|C230009B13Rik|NUDR	DEAF1, transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29004177-4	chr2	29003671	29004671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166705, intron 1 of 5)	intron (NM_001166705, intron 1 of 5)	50895.0	NM_001166705	329375.0	Mm.425079	NM_001085514	ENSMUSG00000079502	Cfap77	1700101E01Rik|Gm823	cilia and flagella associated protein 77	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-66931758-4	chr10	66931248	66932248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11364.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-108461264-4	chr5	108460745	108461745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172716)	promoter-TSS (NM_172716)	-87.0	NM_172716	69587.0	Mm.261218	NM_172716	ENSMUSG00000033623	Pcgf3	2310035N15Rik|AI662857|D630042K08Rik|DONG1|E430039C14|RNF3A|Rnf3	polycomb group ring finger 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40588495-4	chr19	40588001	40589001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019698)	promoter-TSS (NM_019698)	-38.0	NM_153554	56454.0	Mm.233117	NM_019698	ENSMUSG00000025007	Aldh18a1	2810433K04Rik|AI429789|Pycs	aldehyde dehydrogenase 18 family, member A1	protein-coding	21.0	41.0	36.5	31.5	57.0	38.5
Merged-chr13-4609206-4	chr13	4608721	4609721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018859)	promoter-TSS (NM_018859)	-57.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	0.0	7.0	3.0	8.5	0.0	6.5
Merged-chr9-96360362-2	chr9	96359862	96360862	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357213, intron 1 of 7)	intron (NM_001357213, intron 1 of 7)	3353.0	NM_001357213	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0.5	0.0	0.0	2.5	2.5	2.0
Merged-chr7-127206510-2	chr7	127206010	127207010	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144522, intron 1 of 8)	intron (NM_144522, intron 1 of 8)	1958.0	NM_144522	68449.0	Mm.41420	NM_144522	ENSMUSG00000042492	Tbc1d10b	1110003P22Rik|C87963	TBC1 domain family, member 10b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53384949-4	chr4	53384433	53385433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55480.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123949340-4	chr8	123948846	123949846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172288)	promoter-TSS (NM_172288)	-81.0	NM_172288	234865.0	Mm.267812	NM_172288	ENSMUSG00000039509	Nup133	mermaid	nucleoporin 133	protein-coding	70.5	162.0	149.0	72.5	145.0	115.0
Merged-chr11-6389147-4	chr11	6388650	6389650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5975.0	NM_001005867	52915.0	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136143768-4	chr4	136143275	136144275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008321)	promoter-TSS (NM_008321)	-47.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-52004240-4	chr11	52003748	52004748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153785)	promoter-TSS (NM_153785)	27.0	NM_001166653	213084.0	Mm.280557	NM_153785	ENSMUSG00000020389	Cdkl3	AI852479|B230379H01Rik	cyclin-dependent kinase-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-46832118-4	chr14	46831605	46832605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360455)	promoter-TSS (NM_001360455)	-29.0	NM_001360454	68755.0	Mm.343809	NM_026832	ENSMUSG00000055128	Cgrrf1	1110038G02Rik|1810009H17Rik|CGR19	cell growth regulator with ring finger domain 1	protein-coding	10.5	25.5	27.5	12.5	33.5	14.5
Merged-chr12-65172764-4	chr12	65172250	65173250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172578)	promoter-TSS (NM_172578)	-170.0	NM_172578	217653.0	Mm.21144	NM_172578	ENSMUSG00000047534	Mis18bp1	6720403H11|C79407|Knl2|mKIAA1903	MIS18 binding protein 1	protein-coding	66.5	138.5	92.0	41.5	182.5	113.5
Merged-chr2-166471602-5	chr2	166471092	166472092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24141.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80425714-4	chr7	80425205	80426205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-20269.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	20.0	86.5	45.0	24.5	62.0	52.0
Merged-chr4-99120518-4	chr4	99120020	99121020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026082, intron 1 of 47)	CpG	395.0	NM_001290636	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	27.5	26.0	38.0	17.0	36.0	39.5
Merged-chr6-38533151-2	chr6	38532651	38533651	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1710.0	NM_025363	66117.0	Mm.158971	NM_025363	ENSMUSG00000019689	Fmc1	1110001J03Rik	formation of mitochondrial complex V assembly factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-39008069-4	chr2	39007568	39008568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028809)	promoter-TSS (NM_028809)	-71.0	NM_028809	74192.0	Mm.38155	NM_028809	ENSMUSG00000026755	Arpc5l	2010015J01Rik|AI852867|ARC16-2|AW555592|AW742746	actin related protein 2/3 complex, subunit 5-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108086373-2	chr3	108085873	108086873	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346665)	promoter-TSS (NM_001346665)	293.0	NM_028779	109674.0	Mm.274335	NM_028779	ENSMUSG00000027889	Ampd2	1200014F01Rik|AI552571|Ampd-2|m4521Dajl	adenosine monophosphate deaminase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19000703-2	chr7	19000203	19001203	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145579, exon 3 of 3)	exon (NM_145579, exon 3 of 3)	-3362.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	0.0	0.0	1.0	0.0	10.0	0.0
Merged-chr13-28619080-2	chr13	28618580	28619580	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045054, intron 5 of 7)	L1MEg|LINE|L1	91793.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-6174635-4	chr7	6174137	6175137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146024, intron 2 of 4)	B2_Mm2|SINE|B2	2124.0	NM_001146024	72667.0	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-118179708-4	chr4	118179238	118180238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161823, intron 1 of 21)	intron (NM_001161823, intron 1 of 21)	305.0	NM_172382	230674.0	Mm.234234	NM_172382	ENSMUSG00000033326	Kdm4a	D4Ertd222e|JHDM3A|Jmjd2|Jmjd2a|mKIAA0677	lysine (K)-specific demethylase 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-45855730-4	chr5	45855215	45856215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359873, intron 1 of 4)	intron (NM_001359873, intron 1 of 4)	837.0	NM_001359872	209707.0	Mm.71498	NM_172153	ENSMUSG00000015882	Lcorl	Mlr1	ligand dependent nuclear receptor corepressor-like	protein-coding	4.5	10.0	8.0	1.0	6.0	14.5
Merged-chr9-53387464-5	chr9	53387013	53388013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212445, intron 1 of 7)	URR1A|DNA|hAT-Charlie	3490.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58586277-4	chr1	58585784	58586784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025597)	promoter-TSS (NM_025597)	49.0	NM_001310598	213056.0	Mm.26272	NM_172513	ENSMUSG00000038174	Fam126b	C130065N10Rik|D1Ertd53e|D630010C10	family with sequence similarity 126, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132008127-4	chr1	132007604	132008604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007923, intron 1 of 4)	CpG	499.0	NM_007923	13714.0	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65957394-4	chr3	65956895	65957895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019937, intron 2 of 10)	intron (NM_019937, intron 2 of 10)	854.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	64.5	159.0	154.0	64.5	182.0	154.0
Merged-chr2-94437075-4	chr2	94436573	94437573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007466, intron 1 of 13)	intron (NM_007466, intron 1 of 13)	1113.0	NM_007466	11800.0	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding	0.0	4.5	15.0	6.5	15.0	19.0
Merged-chr2-169779073-3	chr2	169778525	169779525	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080455, intron 1 of 1)	(TC)n|Simple_repeat|Simple_repeat	145379.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	4.0	15.0	6.0	0.0	2.0	0.0
Merged-chr11-120526157-4	chr11	120525669	120526669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-4558.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-66111617-4	chr17	66111124	66112124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037757)	promoter-TSS (NM_001037757)	-21.0	NM_001037757	68767.0	Mm.296545	NM_026833	ENSMUSG00000024101	Washc1	1110049F14Rik|ORF19|Wash|Wash1	WASH complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-90597675-4	chr6	90597183	90598183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356412, intron 21 of 22)	intron (NM_001356412, intron 21 of 22)	-7197.0	NM_027868	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57976542-4	chr15	57976044	57977044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9359.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-48978006-4	chr13	48977506	48978506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9894.0	NR_015601	68128.0	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-102690245-4	chr13	102689739	102690739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-3308.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-66474034-4	chr18	66473521	66474521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15417.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102908317-2	chr14	102907817	102908817	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74315.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30664974-4	chr7	30664410	30665410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027999)	promoter-TSS (NM_027999)	84.0	NM_027999	71909.0	Mm.290410	NM_027999	ENSMUSG00000078762	Haus5	2310022K01Rik	HAUS augmin-like complex, subunit 5	protein-coding	11.5	8.5	1.5	10.5	7.5	10.5
Merged-chr4-10923391-4	chr4	10922885	10923885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48887.0	NM_026005	67157.0	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	49.5	157.5	133.5	43.5	178.0	122.0
Merged-chr6-29529206-4	chr6	29528690	29529690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252382)	promoter-TSS (NM_001252382)	-92.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-52165024-4	chr18	52164523	52165523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41477.0	NR_029788	723830.0		NR_029788	ENSMUSG00000065494	Mir28a	Mir28|Mirn28|mmu-mir-28|mmu-mir-28a	microRNA 28a	ncRNA	2.5	10.5	13.0	9.0	13.0	12.0
Merged-chr10-128083175-4	chr10	128082675	128083675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016774)	promoter-TSS (NM_016774)	-132.0	NM_016774	11947.0	Mm.238973	NM_016774	ENSMUSG00000025393	Atp5b	Atp5f1b	ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	protein-coding	32.5	36.5	34.5	32.5	36.0	34.5
Merged-chr5-108692497-4	chr5	108692013	108693013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1716.0	NM_001164259	116701.0	Mm.35691	NM_054071	ENSMUSG00000008090	Fgfrl1	FGFR5|FGFR5beta|FGFR5gamma	fibroblast growth factor receptor-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-62245630-5	chr14	62245202	62246202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47277.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-92855416-4	chr8	92854931	92855931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173014)	promoter-TSS (NM_173014)	98.0	NM_001357374	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	62.0	113.5	67.0	57.5	113.5	91.0
Merged-chr10-23197739-2	chr10	23197239	23198239	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010167, intron 3 of 18)	intron (NM_010167, intron 3 of 18)	152151.0	NM_001347372	14051.0	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126703155-2	chr7	126702655	126703655	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009898, exon 2 of 11)	exon (NM_009898, exon 2 of 11)	1065.0	NM_001301374	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57234012-4	chr9	57233553	57234553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2503.0	NM_001014398	541610.0	Mm.378036	NM_001014398	ENSMUSG00000070298	Trcg1	-	taste receptor cell gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-35585112-2	chr5	35584612	35585612	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030721, intron 2 of 18)	intron (NM_030721, intron 2 of 18)	2078.0	NM_030721	80911.0	Mm.291503	NM_030721	ENSMUSG00000029098	Acox3	BI685180|EST-s59|PCOX	acyl-Coenzyme A oxidase 3, pristanoyl	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122256850-4	chr7	122256363	122257363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32262.0	NM_001316672	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5730780-4	chr17	5730241	5731241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 7 of 8)	intron (NM_146073, intron 7 of 8)	-67916.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94386496-4	chr11	94385997	94386997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	6479.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57034798-3	chr6	57034297	57035297	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-1116.0	NM_134187	171205.0	Mm.222638	NM_134187	ENSMUSG00000061208	Vmn1r8	V1rc32	vomeronasal 1 receptor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-12921822-4	chr7	12921343	12922343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009095)	promoter-TSS (NM_009095)	-468.0	NM_009095	20103.0	Mm.5291	NM_009095	ENSMUSG00000012848	Rps5	AA617411	ribosomal protein S5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61374308-4	chr10	61373835	61374835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013753, intron 1 of 19)	intron (NM_013753, intron 1 of 19)	9188.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8225376-4	chr17	8224866	8225866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10677.0	NM_001190333	12458.0	Mm.8007	NM_009835	ENSMUSG00000040899	Ccr6	CC-CKR-6|CCR-6|Cmkbr6|KY411	chemokine (C-C motif) receptor 6	protein-coding	15.0	10.5	9.0	4.5	11.5	7.5
Merged-chr5-90366179-2	chr5	90365679	90366679	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030886)	promoter-TSS (NM_030886)	6.0	NM_030886	81702.0	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126884736-4	chr8	126884250	126885250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35730.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	10.5	22.5	5.0	2.5	8.5	2.5
Merged-chr7-90043654-4	chr7	90043175	90044175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110364, intron 5 of 5)	intron (NR_110364, intron 5 of 5)	14516.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	39.5	106.5	112.0	60.5	145.5	90.5
Merged-chr9-70585385-4	chr9	70584889	70585889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152142, intron 15 of 19)	intron (NR_152142, intron 15 of 19)	42674.0	NM_025690	66660.0	Mm.22379	NM_025690	ENSMUSG00000032212	Sltm	5730455C01Rik|5730555F13Rik|9130215G10Rik|Met	SAFB-like, transcription modulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132308639-4	chr4	132308128	132309128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029468)	promoter-TSS (NR_029468)	-50.0	NR_029468	100039864.0	Mm.258912	NR_029468	ENSMUSG00000086290	Snhg12	2310005L22Rik	small nucleolar RNA host gene 12	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32215318-4	chr12	32214824	32215824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6675.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	9.5	15.5	7.0	7.5	12.5	13.0
Merged-chr7-74647527-4	chr7	74647010	74648010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92730.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108934780-2	chr9	108934280	108935280	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1868.0	NM_025407	22273.0	Mm.335460	NM_025407	ENSMUSG00000025651	Uqcrc1	1110032G10Rik	ubiquinol-cytochrome c reductase core protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87756208-1	chr11	87755708	87756708	+	1000.0	f0_c57.idr	promoter-TSS (NR_029555)	promoter-TSS (NR_029555)	-656.0	NR_029555	387160.0		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	182.0	576.0	331.5	193.5	483.5	369.5
Merged-chr17-10320248-2	chr17	10319748	10320748	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159517)	promoter-TSS (NM_001159517)	329.0	NR_037588	100526796.0	Mm.384135	NR_037588		Cahm	B930003M22Rik	colon adenocarcinoma hypermethylated RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-57948121-4	chr4	57947616	57948616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011660, intron 3 of 4)	intron (NM_011660, intron 3 of 4)	8295.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-28658700-4	chr19	28658185	28659185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175459, intron 2 of 10)	L1MC4|LINE|L1	-19539.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115859751-4	chr11	115859249	115860249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	35691.0	NM_001252532	217325.0	Mm.290450	NM_145438	ENSMUSG00000020782	Llgl2	9130006H11Rik|Llglh2	LLGL2 scribble cell polarity complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39369569-4	chr18	39369069	39370069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 21 of 21)	intron (NM_001361073, intron 21 of 21)	117676.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110372774-4	chr11	110372288	110373288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26314.0	NM_001356345	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100944455-4	chr7	100943965	100944965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	-12304.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	23.0	74.5	80.0	44.5	82.0	72.0
Merged-chr12-81860881-4	chr12	81860356	81861356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018814, intron 1 of 35)	CpG	826.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7662697-4	chr10	7662194	7663194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030698)	promoter-TSS (NR_030698)	-677.0	NR_030698	320642.0	Mm.398806	NR_030698		A630066F11Rik	-	RIKEN cDNA A630066F11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59829942-4	chr15	59829460	59830460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35001.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90060492-4	chr9	90059996	90060996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007801, exon 2 of 12)	exon (NM_007801, exon 2 of 12)	6229.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	160.5	395.0	282.5	191.0	446.0	275.5
Merged-chr4-120129595-2	chr4	120129117	120130117	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 7 of 8)	intron (NM_010657, intron 7 of 8)	-31589.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0.0	4.5	1.0	3.5	8.0	0.0
Merged-chr7-90410138-2	chr7	90409638	90410638	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001289584, exon 20 of 20)	3' UTR (NM_001289584, exon 20 of 20)	-16174.0	NM_027298	70054.0	Mm.307198	NM_027298	ENSMUSG00000044362	Ccdc89	1700019B01Rik|AU022100|BOIP	coiled-coil domain containing 89	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92906959-4	chr1	92906479	92907479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175118)	promoter-TSS (NM_175118)	-10.0	NM_175118	67446.0	Mm.46179	NM_175118	ENSMUSG00000047067	Dusp28	0710001B24Rik|AV005521	dual specificity phosphatase 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19824333-4	chr7	19823830	19824830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1575.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-98082536-4	chr16	98082053	98083053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015491)	promoter-TSS (NR_015491)	-114.0	NR_015491	320586.0	Mm.442230	NR_015491		A630089N07Rik	-	RIKEN cDNA A630089N07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123041251-4	chr8	123040737	123041737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	1047.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	53.5	93.0	42.0	54.0	92.5	41.0
Merged-chr4-54527863-3	chr4	54527348	54528348	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-420097.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	3.5	3.5	0.5	20.5	43.0	31.0
Merged-chr7-16452824-4	chr7	16452348	16453348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026938)	promoter-TSS (NM_026938)	69.0	NM_026938	69094.0	Mm.29633	NM_026938	ENSMUSG00000019158	Tmem160	1810008O21Rik	transmembrane protein 160	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-108434428-4	chr5	108433865	108434865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007507)	promoter-TSS (NM_007507)	34.0	NR_154996	11958.0	Mm.136093	NM_007507	ENSMUSG00000050856	Atp5k	2610008D24Rik|Atp5i|Lfm1	ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46670874-2	chr19	46670374	46671374	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007809, intron 2 of 7)	intron (NM_007809, intron 2 of 7)	2126.0	NM_007809	13074.0	Mm.1262	NM_007809	ENSMUSG00000003555	Cyp17a1	Cyp17|p450c17	cytochrome P450, family 17, subfamily a, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24593709-4	chr16	24593236	24594236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 4 of 12)	intron (NM_178665, intron 4 of 12)	64422.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-55557692-1	chr15	55557192	55558192	+	1000.0	f0_balb.idr	promoter-TSS (NM_026759)	promoter-TSS (NM_026759)	284.0	NM_001168250	105837.0	Mm.390829	NM_134092	ENSMUSG00000022369	Mtbp	AI429604|MDM2BP	Mdm2, transformed 3T3 cell double minute p53 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-66514541-4	chr17	66514012	66515012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024448, intron 1 of 5)	intron (NM_024448, intron 1 of 5)	5158.0	NM_024448	19328.0	Mm.248313	NM_024448	ENSMUSG00000023460	Rab12	2900054P15Rik|AW555448|C77700	RAB12, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128605791-4	chr8	128605217	128606217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-79937.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	8.5	6.0	18.5	2.0	12.0	10.0
Merged-chr11-107470285-2	chr11	107469785	107470785	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153311, exon 1 of 10)	non-coding (NR_153311, exon 1 of 10)	435.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113615159-4	chr13	113614635	113615635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	3429.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-84017610-4	chr6	84017140	84018140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 1 of 54)	intron (NM_001077694, intron 1 of 54)	-1746.0	NM_001310152	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191447616-4	chr1	191447117	191448117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151615, intron 2 of 5)	(CA)n|Simple_repeat|Simple_repeat	17431.0	NR_151615	102634668.0		NR_151615		Gm32200	-	predicted gene, 32200	ncRNA	0.0	17.5	0.0	8.0	11.5	1.5
Merged-chr4-101182802-4	chr4	101182285	101183285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 5 of 24)	(A)n|Simple_repeat|Simple_repeat	82497.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67116871-4	chr15	67116339	67117339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 3 of 8)	intron (NM_009177, intron 3 of 8)	60043.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	1.0	3.5	18.0	6.0	11.0	16.5
Merged-chr19-15984989-4	chr19	15984475	15985475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045355)	promoter-TSS (NR_045355)	14.0	NM_198019	208518.0	Mm.105652	NM_198019	ENSMUSG00000041491	Cep78	5730599I05Rik|D030027P05	centrosomal protein 78	protein-coding	4.5	15.5	13.0	7.5	21.0	7.0
Merged-chr8-81016212-1	chr8	81015712	81016712	+	1000.0	f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-1306.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	35.5	55.0	45.5	18.0	42.0	35.0
Merged-chr8-125528129-4	chr8	125527623	125528623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	-35290.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	41.5	63.0	50.5	27.5	44.0	63.5
Merged-chr6-31126523-4	chr6	31126010	31127010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-63417.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-15066563-4	chr14	15066091	15067091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	245776.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8712130-4	chr19	8711625	8712625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161413, intron 3 of 9)	intron (NM_001161413, intron 3 of 9)	1772.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99608918-2	chr12	99608418	99609418	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_136760, intron 2 of 3)	intron (NR_136760, intron 2 of 3)	19056.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-82688789-3	chr7	82688242	82689242	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175317, intron 12 of 19)	RMER17C|LTR|ERVK	40128.0	NM_175317	101592.0	Mm.238020	NM_175317	ENSMUSG00000038563	Efl1	4932434J20Rik|6030468D11Rik|AI451340|AU019507|AU022896|D7Ertd791e|Eftud1	elongation factor like GPTase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-57594418-4	chr8	57593900	57594900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 1 of 11)	intron (NM_001167981, intron 1 of 11)	-57353.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-115250564-4	chr10	115250061	115251061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025706, intron 1 of 16)	intron (NM_025706, intron 1 of 16)	932.0	NM_025706	66687.0	Mm.22252	NM_025706	ENSMUSG00000020130	Tbc1d15	4432405K22Rik|AU022358|AU023730|AW557774|Ly6dl|Rab7-GAP	TBC1 domain family, member 15	protein-coding	12.5	36.5	36.0	15.0	70.5	55.5
Merged-chr10-81431916-4	chr10	81431418	81432418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4745.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29524306-4	chr6	29523808	29524808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2317.0	NM_001311083	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-76070549-4	chr2	76070038	76071038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081033, intron 12 of 19)	intron (NM_001081033, intron 12 of 19)	-88571.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-149961071-6	chr1	149960573	149961573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	217.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131950845-2	chr2	131950345	131951345	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001278520)	promoter-TSS (NM_001278520)	-16.0	NM_001278257	26434.0	Mm.180750	NM_023043	ENSMUSG00000027338	Prnd	AI450264|Dpl|PrPLP|doppel	prion like protein doppel	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6165988-4	chr2	6165508	6166508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27243.0	NR_040333	320132.0	Mm.445891	NR_040333	ENSMUSG00000087125	A230108P19Rik	-	RIKEN cDNA A230108P19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-67637376-4	chr13	67636879	67637879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183146, intron 1 of 3)	intron (NM_183146, intron 1 of 3)	374.0	NM_183146	212281.0	Mm.342918	NM_183146	ENSMUSG00000021510	Zfp729a	A530054K11Rik|Rslcan3	zinc finger protein 729a	protein-coding	146.5	275.0	254.5	138.0	270.5	265.5
Merged-chr11-77386538-4	chr11	77386027	77387027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291190, intron 1 of 13)	intron (NM_001291190, intron 1 of 13)	38247.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10831928-8	chr19	10831428	10832428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1870.0	NM_009852	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41275466-4	chr4	41274958	41275958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026872)	promoter-TSS (NM_026872)	-323.0	NM_026872	68926.0	Mm.41864	NM_026872	ENSMUSG00000028433	Ubap2	1190005K07Rik|AA408600|AU045235|UBAP-2|mKIAA1491	ubiquitin-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97820824-4	chr6	97820338	97821338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	13780.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	68.5	229.5	134.5	57.0	163.5	124.0
Merged-chr17-10725073-4	chr17	10724573	10725573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	115118.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0.0	0.5	0.0	0.0	0.5	0.0
Merged-chr9-110071246-4	chr9	110070744	110071744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205330, intron 14 of 18)	intron (NM_001205330, intron 14 of 18)	19223.0	NM_001311164	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6340123-4	chr19	6339625	6340625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001168488, exon 10 of 10)	exon (NM_001168488, exon 10 of 10)	-1035.0	NM_009006	26412.0	Mm.25860	NM_009006	ENSMUSG00000024948	Map4k2	AI385662|BL44|GCK|Rab8ip	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101973887-4	chr15	101973391	101974391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19604.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27552824-2	chr17	27552324	27553324	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3750.0	NM_001166536	15361.0	Mm.4438	NM_016660	ENSMUSG00000046711	Hmga1	AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy	high mobility group AT-hook 1	protein-coding	6.5	16.0	8.0	11.5	1.0	0.5
Merged-chr9-121301151-3	chr9	121300659	121301659	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	ORR1D2|LTR|ERVL-MaLR	3657.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	37.0	73.5	49.0	0.0	9.0	0.5
Merged-chr4-118107460-3	chr4	118106993	118107993	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285520, intron 2 of 11)	intron (NM_001285520, intron 2 of 11)	27453.0	NM_001285520	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	49.5	55.0	61.5	79.0	165.0	168.5
Merged-chr4-119912425-4	chr4	119911910	119912910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	97732.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25507044-2	chr9	25506544	25507544	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	25447.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157688685-4	chr2	157688141	157689141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-48760.0	NM_025680	66642.0	Mm.45193	NM_025680	ENSMUSG00000027649	Ctnnbl1	5730471K09Rik|NAP|NYD-SP19|P14L	catenin, beta like 1	protein-coding	7.5	11.5	18.0	0.5	22.0	7.0
Merged-chr4-114907532-2	chr4	114907032	114908032	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008593, exon 1 of 1)	exon (NM_008593, exon 1 of 1)	1366.0	NM_008593	17301.0	Mm.7997	NM_008593	ENSMUSG00000055210	Foxd2	AI426778|Mf2	forkhead box D2	protein-coding	0.0	3.0	0.0	0.0	0.0	0.0
Merged-chr11-82952800-4	chr11	82952298	82953298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183201, intron 1 of 5)	intron (NM_183201, intron 1 of 5)	696.0	NM_183201	327978.0	Mm.42147	NM_183201	ENSMUSG00000054404	Slfn5	AI956840	schlafen 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34234109-4	chr19	34233603	34234603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001360716, exon 6 of 11)	exon (NM_001360716, exon 6 of 11)	1478.0	NM_001360720	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	12.0	5.5	5.5	15.0	22.0	16.5
Merged-chr12-4592548-2	chr12	4592048	4593048	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198968)	promoter-TSS (NM_001198968)	-460.0	NM_001198969	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58250191-4	chr15	58249674	58250674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-35282.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	26.5	73.5	46.5	31.0	76.0	50.0
Merged-chr8-83740737-2	chr8	83740237	83741237	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 1 of 19)	B3|SINE|B2	574.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	22.5	35.5	32.5	26.5	44.0	36.5
Merged-chr13-67527153-6	chr13	67526621	67527621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133228)	promoter-TSS (NM_133228)	-890.0	NM_133228	170763.0	Mm.491205	NM_133228	ENSMUSG00000097333	Zfp87	2210039O17Rik|4631412O18Rik|KRAB4|Mzf22|Zfp72	zinc finger protein 87	protein-coding	46.5	36.5	34.5	13.5	19.5	17.5
Merged-chr5-43094583-4	chr5	43094071	43095071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138892.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0.0	5.0	4.0	9.0	12.5	7.0
Merged-chr19-24999467-4	chr19	24998963	24999963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028785)	promoter-TSS (NM_028785)	-66.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	64.5	177.5	154.0	53.5	106.0	104.0
Merged-chr16-13780729-4	chr16	13780239	13781239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039521)	promoter-TSS (NM_001039521)	40.0	NM_001039521	106298.0	Mm.288606	NM_001039521	ENSMUSG00000022682	Rrn3	AL023001|E130302O19Rik|R75565|TIF-1A|Tif1a	RRN3 RNA polymerase I transcription factor homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4042317-4	chr19	4041829	4042829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181796)	promoter-TSS (NM_181796)	-108.0	NM_181796	14869.0	Mm.441542	NM_181796	ENSMUSG00000038155	Gstp2	GSTpiA|Gst-3|Gst3	glutathione S-transferase, pi 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79642917-4	chr12	79642410	79643410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	281823.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35053452-2	chr7	35052952	35053952	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009884, intron 1 of 1)	MER5A|DNA|hAT-Charlie	3114.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45451483-4	chr7	45450970	45451970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030678, intron 12 of 15)	intron (NM_030678, intron 12 of 15)	8416.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95315758-1	chr3	95315258	95316258	+	1000.0	f0_balb.idr	intron (NM_029789, intron 1 of 10)	intron (NM_029789, intron 1 of 10)	568.0	NM_029789	76893.0	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-86477034-4	chr9	86476531	86477531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177208, intron 1 of 38)	L1MB2|LINE|L1	9877.0	NM_177208	320615.0	Mm.245500	NM_177208	ENSMUSG00000034973	Dopey1	B130005I07Rik|BC035275|C130028L17|D9Ertd809e	dopey family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117810699-5	chr11	117810252	117811252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009304, intron 1 of 3)	intron (NM_009304, intron 1 of 3)	1085.0	NM_009304	20973.0	Mm.468228	NM_009304	ENSMUSG00000048277	Syngr2	Clast2|cellugyrin	synaptogyrin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102745911-4	chr2	102745407	102746407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153852, exon 2 of 3)	non-coding (NR_153852, exon 2 of 3)	853.0	NR_153852	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51763674-4	chr11	51763157	51764157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025535)	promoter-TSS (NM_025535)	-6.0	NM_025535	66397.0	Mm.196592	NM_025535	ENSMUSG00000020386	Sar1b	2310075M17Rik|2900019I22Rik|CMRD|Sara1b|Sara2|Sarb	secretion associated Ras related GTPase 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86895209-2	chr12	86894709	86895709	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10395.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113046221-4	chr6	113045732	113046732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355266)	promoter-TSS (NM_001355266)	-70.0	NM_001355266	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-74792482-3	chr5	74791985	74792985	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89582.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-39004588-4	chr2	39004117	39005117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025592, intron 2 of 3)	intron (NM_025592, intron 2 of 3)	514.0	NM_025592	66489.0	Mm.345333	NM_025592	ENSMUSG00000062997	Rpl35	2410039E09Rik	ribosomal protein L35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31615615-4	chr15	31615093	31616093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356313, intron 5 of 5)	intron (NM_001356313, intron 5 of 5)	13477.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106194251-2	chr11	106193751	106194751	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028126)	promoter-TSS (NM_028126)	-648.0	NM_001252449	72149.0	Mm.403722	NM_028126	ENSMUSG00000069631	Strada	2610019A05Rik|6030402H20Rik|AI480680|E130112C09Rik	STE20-related kinase adaptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65579101-4	chr9	65578582	65579582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 1 of 5)	MIR3|SINE|MIR	1005.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	163.5	262.0	174.0	73.0	236.5	157.5
Merged-chr5-145199929-2	chr5	145199429	145200429	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023322, intron 1 of 2)	ID_B1|SINE|B4	1953.0	NM_023322	67235.0	Mm.432480	NM_023322	ENSMUSG00000029627	Zkscan14	2310046C23Rik|2810437E14Rik|Zfp99|Znf394	zinc finger with KRAB and SCAN domains 14	protein-coding	6.0	12.0	5.5	3.5	1.5	1.5
Merged-chr14-43531629-2	chr14	43531129	43532129	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76384.0	NM_001098269	100042342.0	Mm.429750	NM_001098269	ENSMUSG00000095528	Gm10375	-	predicted gene 10375	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34858824-4	chr17	34858338	34859338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008198, intron 10 of 17)	intron (NM_008198, intron 10 of 17)	-1206.0	NR_105938	102465587.0		NR_105938	ENSMUSG00000098445	Mir6972	Gm27810|mmu-mir-6972	microRNA 6972	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27192895-2	chr3	27192395	27193395	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	ORR1A2|LTR|ERVL-MaLR	9891.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96459377-4	chr10	96458882	96459882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157619.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86524972-2	chr6	86524472	86525472	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011865, exon 1 of 1)	exon (NM_011865, exon 1 of 1)	1217.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59534907-4	chr11	59534423	59535423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-6646.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153168339-4	chr2	153167835	153168835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	intron (NM_133847, intron 1 of 17)	7034.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45667369-4	chr14	45666877	45667877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9234.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	94.5	212.0	133.0	94.0	190.0	135.5
Merged-chr9-85327356-4	chr9	85326857	85327857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160378)	promoter-TSS (NM_001160378)	-207.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	45.5	166.0	99.5	87.0	175.5	169.0
Merged-chr11-29707034-4	chr11	29706530	29707530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_194051, exon 3 of 9)	exon (NM_194051, exon 3 of 9)	-11533.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	19.0	39.5	17.0	16.5	29.5	33.0
Merged-chr10-21827628-4	chr10	21827130	21828130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54554.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-45852668-4	chr11	45852150	45853150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045520, intron 1 of 11)	intron (NM_001045520, intron 1 of 11)	686.0	NM_001045520	216705.0	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	53.5	127.5	116.0	81.0	94.0	120.5
Merged-chr11-101171460-4	chr11	101170913	101171913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346769)	promoter-TSS (NM_001346769)	-41.0	NM_001346769	217198.0	Mm.273254	NM_146030	ENSMUSG00000035172	Plekhh3	BC020025	pleckstrin homology domain containing, family H (with MyTH4 domain) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128927554-2	chr4	128927054	128928054	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	34901.0	NM_172875	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-36797356-4	chr9	36796859	36797859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199494)	promoter-TSS (NM_001199494)	34.0	NM_001199494	13663.0	Mm.4337	NM_007915	ENSMUSG00000062762	Ei24	AA536736|AI115355|PIG8	etoposide induced 2.4 mRNA	protein-coding	0.0	0.0	0.0	2.0	0.0	0.0
Merged-chr17-16951475-4	chr17	16950984	16951984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112619.0	NM_001005358	449000.0	Mm.483718	NM_001005358	ENSMUSG00000096696	Zfp960	-	zinc finger protein 960	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-10476734-4	chr10	10476244	10477244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4430.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69802552-2	chr11	69802052	69803052	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291104)	promoter-TSS (NM_001291104)	-836.0	NM_010198	14166.0	Mm.269011	NM_010198	ENSMUSG00000042826	Fgf11	Fgf-11|Fhf-3|Fhf3	fibroblast growth factor 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80678825-4	chr10	80678378	80679378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2585.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-69707542-4	chr14	69707043	69708043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301652)	promoter-TSS (NM_001301652)	41.0	NM_001146012	71843.0	Mm.27738	NM_001146012	ENSMUSG00000034194	R3hcc1	1700020M16Rik|AA407796	R3H domain and coiled-coil containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32642440-4	chr11	32641947	32642947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271349)	promoter-TSS (NM_001271349)	-108.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75704629-4	chr2	75704141	75705141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010902)	promoter-TSS (NM_010902)	22.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	93.0	124.5	95.0	59.0	163.5	101.0
Merged-chr11-79254725-4	chr11	79254217	79255217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019653)	promoter-TSS (NM_019653)	-22.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50732766-4	chr16	50732249	50733249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028300)	promoter-TSS (NR_028300)	24.0	NR_028300	68190.0	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-78376882-4	chr16	78376387	78377387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009770)	promoter-TSS (NM_009770)	-77.0	NM_009770	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88867580-4	chr4	88867099	88868099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12602.0	NM_177348	230405.0	Mm.246593	NM_177348	ENSMUSG00000045364	Ifne	Ifn-tau-1|Ifne1|Ifnt1|Infe1	interferon epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18089224-4	chr16	18088730	18089730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011172)	promoter-TSS (NM_011172)	-40.0	NM_011172	19125.0	Mm.28456	NM_011172	ENSMUSG00000003526	Prodh	Pro-1|Pro1|Ym24d07	proline dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79520123-4	chr11	79519628	79520628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077496, intron 1 of 1)	intron (NM_001077496, intron 1 of 1)	3634.0	NM_001077496	216984.0	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	14.5	97.0	47.0	19.0	114.5	39.5
Merged-chr1-23867560-4	chr1	23867055	23868055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290683, intron 4 of 9)	MTD|LTR|ERVL-MaLR	42181.0	NR_110972	98366.0	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	4.5	18.5	7.0	0.5	7.5	9.0
Merged-chr11-103315535-4	chr11	103315036	103316036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29166.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0.5	6.0	0.0	3.0	0.0	0.0
Merged-chr4-16169047-4	chr4	16168553	16169553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045765, intron 1 of 6)	intron (NR_045765, intron 1 of 6)	4943.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18146122-2	chr2	18145622	18146622	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010804, intron 8 of 22)	B1_Mus2|SINE|Alu	81537.0	NM_001252561	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120127668-4	chr9	120127164	120128164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011029)	promoter-TSS (NM_011029)	-102.0	NM_011029	16785.0	Mm.4071	NM_011029	ENSMUSG00000032518	Rpsa	67kDa|67lr|AL022858|Lamr|Lamr1|Lamrl1|MLR|P40|P40-3|P40-8	ribosomal protein SA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36306375-2	chr1	36305875	36306875	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1358.0	NM_001172206	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16015354-4	chr19	16014835	16015835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	30260.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	7.0	6.0	27.5	14.5	41.5	20.0
Merged-chr10-127380587-4	chr10	127380084	127381084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359244)	promoter-TSS (NM_001359244)	-84.0	NM_001359244	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	29.5	112.0	77.5	36.0	49.5	64.0
Merged-chr8-83739706-2	chr8	83739205	83740205	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 1 of 19)	B1_Mur1|SINE|Alu	1606.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	189.0	483.5	302.0	166.0	512.5	283.5
Merged-chr2-119972394-4	chr2	119971911	119972911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011941)	promoter-TSS (NM_011941)	-288.0	NM_001355293	26390.0	Mm.330501	NM_011941	ENSMUSG00000033902	Mapkbp1	2810483F24Rik|AW123212|JNKBP-1|Jnkbp1|mKIAA0596	mitogen-activated protein kinase binding protein 1	protein-coding	12.0	12.5	8.5	9.0	11.5	5.5
Merged-chr17-73948294-4	chr17	73947794	73948794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 1 of 35)	intron (NM_011723, intron 1 of 35)	1902.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34912834-4	chr7	34912341	34913341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 1 of 14)	intron (NM_008820, intron 1 of 14)	434.0	NM_008820	18624.0	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123851976-6	chr9	123851488	123852488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148925)	promoter-TSS (NM_148925)	-89.0	NM_001110253	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132573540-4	chr4	132573062	132574062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081211, intron 1 of 1)	intron (NM_001081211, intron 1 of 1)	9495.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114649326-2	chr6	114648826	114649826	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 2 of 19)	intron (NM_001253718, intron 2 of 19)	6229.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120619799-7	chr8	120619310	120620310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308449, intron 2 of 3)	intron (NM_001308449, intron 2 of 3)	14572.0	NM_197988	68918.0	Mm.473736	NM_197988	ENSMUSG00000043687	1190005I06Rik	-	RIKEN cDNA 1190005I06 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98249893-4	chr12	98249411	98250411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008079, intron 5 of 16)	intron (NM_008079, intron 5 of 16)	9548.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-66907118-3	chr13	66906611	66907611	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177750, intron 1 of 2)	intron (NM_001177750, intron 1 of 2)	1696.0	NM_001177750	100038538.0	Mm.405005	NM_001177750	ENSMUSG00000074826	Gm10767	-	predicted gene 10767	protein-coding	8.0	2.5	2.5	6.0	0.0	0.0
Merged-chr17-86166834-6	chr17	86166331	86167331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011104)	promoter-TSS (NM_011104)	-954.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	1.5	51.0	28.5	19.0	32.5	47.0
Merged-chr1-131679836-4	chr1	131679332	131680332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8863.0	NM_001311096	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	28.0	67.0	36.5	35.5	45.0	39.0
Merged-chr9-74990152-4	chr9	74989593	74990593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153584, intron 1 of 11)	intron (NM_153584, intron 1 of 11)	13982.0	NM_153584	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	23.0	47.5	34.0	26.5	58.5	38.0
Merged-chr12-86819389-4	chr12	86818926	86819926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	65388.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75083995-4	chr8	75083500	75084500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9618.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-22307504-2	chr10	22307004	22308004	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_015465, intron 2 of 2)	intron (NR_015465, intron 2 of 2)	784.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142949742-3	chr5	142949249	142950249	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10606.0	NM_007984	14086.0	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-42950272-4	chr4	42949775	42950775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355440)	promoter-TSS (NM_001355440)	-121.0	NM_001355440	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-59186523-3	chr1	59186032	59187032	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159948, intron 15 of 33)	intron (NM_001159948, intron 15 of 33)	-23143.0	NM_001164682	227157.0	Mm.474049	NM_145143	ENSMUSG00000079550	Mpp4	Dlg6	membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4)	protein-coding	0.0	2.0	6.0	4.5	4.0	6.0
Merged-chr18-4266207-4	chr18	4265693	4266693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86760.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20643851-2	chr18	20643351	20644351	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155534, intron 1 of 2)	intron (NR_155534, intron 1 of 2)	-21399.0	NM_013697	22139.0	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12408873-4	chr13	12408360	12409360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144835, intron 13 of 44)	intron (NM_144835, intron 13 of 44)	13485.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39489367-5	chr18	39488887	39489887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2142.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66689765-4	chr7	66689272	66690272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003961)	promoter-TSS (NR_003961)	-117.0	NM_152815	72635.0	Mm.289796	NM_152815	ENSMUSG00000053091	Lins1	2700083B01Rik|AW547219|Lins|Lins2|Wins2	lines homolog 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61517947-4	chr8	61517429	61518429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 18 of 21)	intron (NM_001293772, intron 18 of 21)	30195.0	NM_145595	234309.0	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70634259-4	chr8	70633728	70634728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1772.0	NM_001330687	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	48.0	113.0	109.5	21.0	54.0	55.0
Merged-chr1-168432438-4	chr1	168431918	168432918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291509)	promoter-TSS (NM_001291509)	-249.0	NM_008783	18514.0	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86479291-4	chr1	86478796	86479796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47261.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13828095-3	chr9	13827605	13828605	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310721)	promoter-TSS (NM_001310721)	389.0	NM_176836	72826.0	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124425833-6	chr5	124425340	124426340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359978)	promoter-TSS (NM_001359978)	117.0	NM_001081203	243272.0	Mm.23879	NM_145631	ENSMUSG00000038095	Sbno1	9330180L10Rik|AI849128|AW557836|BC021875|Sbno|mSno1|sno	strawberry notch 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38217136-2	chr18	38216636	38217636	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7374.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105663857-4	chr1	105663373	105664373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029349)	promoter-TSS (NM_029349)	12.0	NM_029349	227446.0	Mm.337339	NM_029349	ENSMUSG00000026319	2310035C23Rik	6430401N10|Kiaa1468|Relch|mKIAA1468	RIKEN cDNA 2310035C23 gene	protein-coding	13.5	65.0	47.5	23.5	66.0	26.0
Merged-chr1-92251084-4	chr1	92250566	92251566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-70725.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	2.5	1.5	2.5	0.0	0.0	2.0
Merged-chr11-78346749-2	chr11	78346249	78347249	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313987)	promoter-TSS (NM_001313987)	39.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85257190-1	chr1	85256690	85257690	+	1000.0	f1_balb.idr	intron (NM_001037909, intron 3 of 6)	(TGGA)n|Simple_repeat|Simple_repeat	13376.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-151741286-4	chr2	151740792	151741792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305244)	promoter-TSS (NM_001305244)	18.0	NM_212446	228769.0	Mm.146984	NM_144889	ENSMUSG00000032869	Psmf1	AW048666|BC012260|PI31	proteasome (prosome, macropain) inhibitor subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-14943154-4	chr17	14942645	14943645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083880)	promoter-TSS (NM_001083880)	-21.0	NM_175173	71682.0	Mm.122698	NM_175173	ENSMUSG00000046991	Wdr27	0610012K18Rik	WD repeat domain 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11455925-4	chr16	11455457	11456457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	50309.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-19901851-4	chr5	19901336	19902336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 2 of 22)	MIRb|SINE|MIR	-5682.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34640930-4	chr17	34640419	34641419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3964.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3935969-4	chr19	3935482	3936482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019449, intron 2 of 10)	intron (NM_019449, intron 2 of 10)	796.0	NM_001161428	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30577823-3	chr14	30577344	30578344	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5695.0	NR_037237	100526475.0		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	0.5	11.0	13.5	0.0	0.0	1.5
Merged-chr9-106170887-4	chr9	106170412	106171412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029896)	promoter-TSS (NM_029896)	-17.0	NM_029896	77305.0	Mm.265125	NM_029896	ENSMUSG00000020257	Wdr82	9430077D24Rik|CDW5/WDR82	WD repeat domain containing 82	protein-coding	54.5	97.5	70.5	22.0	84.0	75.5
Merged-chr6-88053912-4	chr6	88053419	88054419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8649.0	NM_009005	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-21055650-4	chr2	21055114	21056114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86740.0	NR_033225	433408.0	Mm.386941	NR_033225		Gm13375	-	predicted gene 13375	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134460465-4	chr4	134459975	134460975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-7845.0	NM_019641	16765.0	Mm.378957	NM_019641	ENSMUSG00000028832	Stmn1	19k|Lag|Lap18|Op18|P18|P19|Pig|Pp17|Pp18|Pp19|Pr22|Smn	stathmin 1	protein-coding	4.5	7.0	10.0	6.5	23.5	8.0
Merged-chr3-122566732-4	chr3	122566228	122567228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114665, intron 5 of 15)	intron (NM_001114665, intron 5 of 15)	-25047.0	NR_106117	102465764.0		NR_106117	ENSMUSG00000104773	Mir7657	mmu-mir-7657	microRNA 7657	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-145116535-4	chr5	145116030	145117030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023142, intron 1 of 9)	intron (NM_023142, intron 1 of 9)	2274.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91765802-4	chr12	91765283	91766283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	B4A|SINE|B4	20653.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119354980-4	chr11	119354486	119355486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178743)	promoter-TSS (NM_178743)	524.0	NM_018822	27029.0	Mm.103788	NM_018822	ENSMUSG00000005043	Sgsh	4632406A19Rik	N-sulfoglucosamine sulfohydrolase (sulfamidase)	protein-coding	101.0	195.5	205.0	97.5	152.5	201.5
Merged-chr14-115040539-2	chr14	115040039	115041039	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3132.0	NR_029785	723905.0		NR_029785	ENSMUSG00000065508	Mir17	Mirn17|mir-17|mmu-mir-17	microRNA 17	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91011180-4	chr16	91010679	91011679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028368)	promoter-TSS (NR_028368)	-70.0	NR_028368	67394.0	Mm.491293	NR_028368	ENSMUSG00000087354	4930404I05Rik	-	RIKEN cDNA 4930404I05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38027101-2	chr18	38026601	38027601	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-28132.0	NM_001205336	106952.0	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9118446-4	chr4	9117924	9118924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-150869.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-56135522-4	chr13	56135029	56136029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159514)	promoter-TSS (NM_001159514)	21.0	NM_012015	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	29.5	24.5	25.5	17.0	28.5	26.5
Merged-chr4-141033573-2	chr4	141033073	141034073	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145958, intron 18 of 35)	intron (NM_001145958, intron 18 of 35)	20088.0	NM_172122	230872.0	Mm.80685	NM_172122	ENSMUSG00000040860	Crocc	-	ciliary rootlet coiled-coil, rootletin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57765119-4	chr9	57764654	57765654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007713, exon 1 of 13)	exon (NM_007713, exon 1 of 13)	706.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76226686-4	chr16	76226185	76227185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	104072.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28224184-4	chr17	28223691	28224691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027185, intron 7 of 10)	intron (NM_027185, intron 7 of 10)	-8563.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-117018850-2	chr13	117018350	117019350	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	6666.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	3.0	10.5	6.5	2.5	7.5	3.0
Merged-chr14-73436773-2	chr14	73436273	73437273	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51484.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-90516116-4	chr13	90515609	90516609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	389246.0	NM_001145879	435376.0	Mm.292579	NM_001145879	ENSMUSG00000078958	Atp6ap1l	EG435376	ATPase, H+ transporting, lysosomal accessory protein 1-like	protein-coding	0.0	0.0	2.5	4.5	1.0	1.0
Merged-chr13-41521509-4	chr13	41521001	41522001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-34141.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	18.5	74.0	38.5	37.5	54.5	48.0
Merged-chr13-54789912-2	chr13	54789396	54790396	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028841, intron 1 of 7)	CpG	491.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	0.0	8.5	3.0	0.0	15.5	2.0
Merged-chr4-150523558-2	chr4	150523047	150524047	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 10 of 22)	intron (NM_001085492, intron 10 of 22)	128627.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	3.5	1.5	6.0	3.0	6.5	6.5
Merged-chr9-116111836-3	chr9	116111324	116112324	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 3 of 6)	URR1B|DNA|hAT-Charlie	63539.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.0	0.0	3.5	5.0	15.5	13.0
Merged-chr9-21161498-4	chr9	21161016	21162016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4198.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35110642-2	chr2	35110142	35111142	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_012018, intron 1 of 43)	intron (NM_012018, intron 1 of 43)	1150.0	NM_012018	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-79273056-4	chr7	79272552	79273552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018811)	promoter-TSS (NM_018811)	-214.0	NM_018811	54608.0	Mm.365490	NM_018811	ENSMUSG00000039202	Abhd2	2210009N18Rik|LABH2|Labh-2	abhydrolase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81366239-4	chr10	81365721	81366721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001014836)	promoter-TSS (NM_001014836)	-401.0	NM_001014836	432479.0	Mm.440450	NM_001014836	ENSMUSG00000020234	4930404N11Rik	2210409H10Rik|5730551K18Rik|AI854616	RIKEN cDNA 4930404N11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91206452-4	chr2	91205943	91206943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357067, intron 6 of 10)	intron (NM_001357067, intron 6 of 10)	3531.0	NM_007387	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38562802-4	chr16	38562318	38563318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205287)	promoter-TSS (NM_001205287)	4.0	NM_026407	67846.0	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141182126-4	chr4	141181588	141182588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172518, intron 4 of 9)	ORR1C2|LTR|ERVL-MaLR	-31868.0	NM_001081174	76166.0	Mm.271064	NM_001081174	ENSMUSG00000073733	Rsg1	6330545A04Rik|Gm723|b2b2804Clo|b2b2827Clo	REM2 and RAB-like small GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6731040-4	chr2	6730539	6731539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 3 of 15)	intron (NM_001110232, intron 3 of 15)	-9377.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3512931-4	chr2	3512451	3513451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177647)	promoter-TSS (NM_177647)	-114.0	NM_177647	227526.0	Mm.211455	NM_177647	ENSMUSG00000039496	Cdnf	9330140G23|Armetl1	cerebral dopamine neurotrophic factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116020235-4	chr11	116019692	116020692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4312.0	NM_008211	15081.0	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	0.0	3.5	7.5	0.0	6.0	9.5
Merged-chr3-100176200-4	chr3	100175706	100176706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104341, intron 3 of 13)	intron (NR_104341, intron 3 of 13)	13743.0	NR_104341	14547.0	Mm.279228	NM_010269	ENSMUSG00000027865	Gdap2	C77050|D3Ertd801e	ganglioside-induced differentiation-associated-protein 2	protein-coding	21.0	21.5	14.0	21.0	21.5	14.5
Merged-chr4-155564081-3	chr4	155563575	155564575	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355599, intron 1 of 10)	CpG	260.0	NM_001355599	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	35.5	111.5	65.5	46.0	108.0	66.5
Merged-chr3-59230594-2	chr3	59230094	59231094	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 16 of 43)	intron (NM_177855, intron 16 of 43)	-19712.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	17.5	27.5	14.5	16.5	29.5	14.5
Merged-chr3-94439324-2	chr3	94438824	94439824	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2673.0	NM_016901	53814.0	Mm.440422	NM_016901	ENSMUSG00000028141	Oaz3	AZ3|Az-3|Oaz-t	ornithine decarboxylase antizyme 3	protein-coding	0.0	0.0	1.0	2.0	2.0	6.0
Merged-chr15-81836640-4	chr15	81836162	81837162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21664.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	28.0	45.5	37.5	34.0	67.5	42.0
Merged-chr8-25090579-4	chr8	25090078	25091078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 1 of 11)	intron (NM_031257, intron 1 of 11)	11233.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122614497-4	chr5	122613984	122614984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358917)	promoter-TSS (NM_001358917)	60.0	NM_001358919	12589.0	Mm.10125	NM_009879	ENSMUSG00000029469	Ift81	AW060663|Cdv-1|Cdv-1r|Cdv1	intraflagellar transport 81	protein-coding	5.5	16.5	10.0	0.0	17.5	6.5
Merged-chr15-102406724-4	chr15	102406223	102407223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013672, intron 1 of 5)	CpG-5406	407.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-146492583-2	chr4	146492083	146493083	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-9417.0	NM_001243138	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-70885867-4	chr2	70885361	70886361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-60381.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	18.5	17.0	16.0	19.0	17.0	15.5
Merged-chr8-69037917-4	chr8	69037410	69038410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153054, exon 17 of 17)	3' UTR (NM_153054, exon 17 of 17)	-50826.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	17.5	48.0	36.0	13.5	45.5	34.5
Merged-chr2-126515219-4	chr2	126514713	126515713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	-15366.0	NM_001359975	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	6.0	0.0	3.5	0.0	3.5	4.0
Merged-chr2-120563803-4	chr2	120563277	120564277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011743)	promoter-TSS (NM_011743)	82.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	7.0	47.0	23.0	8.0	33.5	25.0
Merged-chr16-17182349-4	chr16	17181841	17182841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009456, intron 1 of 3)	ORR1D1|LTR|ERVL-MaLR	19151.0	NM_009456	22195.0	Mm.3074	NM_009456	ENSMUSG00000038965	Ube2l3	C79827|UbcM4|Ubce7	ubiquitin-conjugating enzyme E2L 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99625882-4	chr7	99625347	99626347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001195529, exon 1 of 1)	exon (NM_001195529, exon 1 of 1)	1256.0	NM_001195529	100503386.0	Mm.180719	NM_001195529	ENSMUSG00000096606	Tpbgl	EG245190|Gm4980	trophoblast glycoprotein-like	protein-coding	0.0	3.0	0.0	0.0	3.0	0.0
Merged-chr12-85602468-2	chr12	85601968	85602968	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 1 of 3)	intron (NM_001205053, intron 1 of 3)	2450.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81606212-4	chr10	81605715	81606715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030677)	promoter-TSS (NR_030677)	-93.0	NR_030677	268319.0	Mm.131825	NM_001033363	ENSMUSG00000074862	BC025920	-	zinc finger protein pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96286798-4	chr15	96286282	96287282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175251)	promoter-TSS (NM_175251)	-740.0	NM_175251	77044.0	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|BAF200|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64343442-4	chr1	64342919	64343919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-189385.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30308675-4	chr7	30308180	30309180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198027)	promoter-TSS (NM_198027)	-73.0	NM_198027	233065.0	Mm.276277	NM_198027	ENSMUSG00000042831	Alkbh6	AI839550|Abh6|C130099A02	alkB homolog 6	protein-coding	12.5	66.5	76.5	34.0	72.0	48.5
Merged-chr4-12089364-4	chr4	12088843	12089843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356563)	promoter-TSS (NM_001356563)	-27.0	NM_001356563	77604.0	Mm.474129	NM_198957	ENSMUSG00000052137	Rbm12b2	AV299215|C430048L16Rik|Rbm12bb	RNA binding motif protein 12 B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120151899-4	chr6	120151408	120152408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	ORR1F|LTR|ERVL-MaLR	-41915.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143473863-2	chr5	143473363	143474363	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 3 of 14)	B4A|SINE|B4	9370.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81136173-4	chr13	81135668	81136668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	172094.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34981976-4	chr17	34981479	34982479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030597)	promoter-TSS (NM_030597)	125.0	NM_001204274	27756.0	Mm.165735	NM_030597	ENSMUSG00000007050	Lsm2	D17H6S56E-2|D17H6S56E2|Dmapl|Dmpkap|G7b|Sm-X5|SmX5|snRNP	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165852683-4	chr2	165852211	165853211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252584, intron 2 of 22)	ORR1E|LTR|ERVL-MaLR	5462.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	23.5	64.5	63.5	34.5	74.5	77.0
Merged-chr17-5485512-2	chr17	5485012	5486012	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2443.0	NR_073378	666919.0		NR_073378		Gm8363	EG666919	non-SMC condensin II complex, subunit H2 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128094813-4	chr10	128094314	128095314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054078, intron 1 of 29)	intron (NM_054078, intron 1 of 29)	2031.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-64887218-4	chr18	64886697	64887697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001114386)	promoter-TSS (NM_001114386)	-559.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	9.0	18.5	19.5	10.5	19.5	18.0
Merged-chr17-83682100-4	chr17	83681580	83682580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24083.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-49050176-4	chr10	49049668	49050668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	737769.0	NM_001358866	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	5.0	3.5	5.5	12.5	22.0	8.5
Merged-chr11-107539191-2	chr11	107538691	107539691	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8769.0	NM_198298	78455.0	Mm.272047	NM_198298	ENSMUSG00000020721	Helz	3110078M01Rik|9430093I07Rik|9630002H22Rik|AI851979|DRHC	helicase with zinc finger domain	protein-coding	3.5	2.5	1.0	0.0	5.0	0.5
Merged-chr9-78489095-4	chr9	78488581	78489581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7357.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167058482-4	chr2	167057988	167058988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033196, intron 2 of 13)	intron (NM_001033196, intron 2 of 13)	-4446.0	NR_138563	68949.0	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123076281-4	chr5	123075766	123076766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039723)	promoter-TSS (NM_001039723)	-9.0	NM_001039723	330189.0	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	22.5	47.5	45.5	26.5	45.0	52.0
Merged-chr3-34081290-4	chr3	34080797	34081797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286972)	promoter-TSS (NM_001286972)	57.0	NM_001026211	67713.0	Mm.274266	NM_026332	ENSMUSG00000027679	Dnajc19	1810055D05Rik|AA959924|Tim14	DnaJ heat shock protein family (Hsp40) member C19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81298068-4	chr10	81297578	81298578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	5115.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64102126-3	chr15	64101652	64102652	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 25 of 28)	intron (NM_001276461, intron 25 of 28)	-41704.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	55.5	25.5	21.5	55.5	110.0	74.5
Merged-chr5-149053087-4	chr5	149052573	149053573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010439)	promoter-TSS (NM_010439)	-16.0	NM_010439	15289.0	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	6.5	2.0	5.0	6.5	4.5	7.0
Merged-chr8-105497049-4	chr8	105496557	105497557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175160)	promoter-TSS (NM_175160)	-155.0	NM_175160	70796.0	Mm.100917	NM_175160	ENSMUSG00000039199	Zdhhc1	4432412D04Rik|DHHC-1	zinc finger, DHHC domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17684031-4	chr10	17683535	17684535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39193.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-140999497-4	chr7	140998998	140999998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11246.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142817872-4	chr5	142817380	142818380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122730)	promoter-TSS (NM_001122730)	-493.0	NM_001122730	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79534531-2	chr10	79534031	79535031	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302442)	promoter-TSS (NM_001302442)	-744.0	NM_001302389	50784.0	Mm.28873	NM_015817	ENSMUSG00000052151	Plpp2	Lpp2|PAP2-G|PAP2-gamma|PAP2c|Ppap2c	phospholipid phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55008393-4	chr11	55007899	55008899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 6 of 24)	L2b|LINE|L2	25072.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136143543-2	chr1	136143043	136144043	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	12153.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122800519-4	chr10	122800007	122801007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 2 of 9)	intron (NM_001110218, intron 2 of 9)	121192.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	10.0	51.5	50.0	17.0	24.0	40.0
Merged-chr11-62693477-2	chr11	62692977	62693977	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35616.0	NM_133208	170740.0	Mm.339982	NM_133208	ENSMUSG00000005267	Zfp287	B230333C16Rik|SKAT-2|Skat2|Znf287|mszf16|mszf74	zinc finger protein 287	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4351878-4	chr18	4351382	4352382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 1 of 7)	intron (NM_007746, intron 1 of 7)	1071.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71288326-4	chr17	71287842	71288842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	22669.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	68.5	155.0	112.5	143.5	280.0	199.5
Merged-chr14-34312690-4	chr14	34312184	34313184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008133, intron 1 of 12)	intron (NM_008133, intron 1 of 12)	1957.0	NM_008133	14661.0	Mm.10600	NM_008133	ENSMUSG00000021794	Glud1	AI118167|Gdh-X|Glud|Gludl	glutamate dehydrogenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102518067-4	chr15	102517580	102518580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009319)	promoter-TSS (NM_009319)	-112.0	NM_001253795	21357.0	Mm.291485	NM_009319	ENSMUSG00000023051	Tarbp2	Prbp|TRBP	TARBP2, RISC loading complex RNA binding subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134522064-4	chr5	134521575	134522575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039162, intron 3 of 15)	ORR1F|LTR|ERVL-MaLR	30359.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-66125122-4	chr2	66124629	66125629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015736)	promoter-TSS (NM_015736)	-336.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167799763-4	chr2	167799220	167800220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108543.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90233519-4	chr9	90233024	90234024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	37245.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-90249339-4	chr11	90248846	90249846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026178)	promoter-TSS (NM_026178)	-130.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21927479-4	chr9	21926980	21927980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253870)	promoter-TSS (NM_001253870)	9.0	NM_025977	67119.0	Mm.154305	NM_025977	ENSMUSG00000006241	Ccdc159	2510048L02Rik	coiled-coil domain containing 159	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51264088-2	chr11	51263588	51264588	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358281)	promoter-TSS (NM_001358281)	-426.0	NM_001358281	193286.0	Mm.80975	NM_177567	ENSMUSG00000045942	BC049762	4930503F14	cDNA sequence BC049762	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61022720-4	chr9	61022250	61023250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5681.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-10460332-3	chr10	10459834	10460834	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 1 of 36)	L1MEd|LINE|L1	11980.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	76.5	212.0	148.5	36.5	111.5	73.5
Merged-chr4-142021407-4	chr4	142020908	142021908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131014, intron 1 of 1)	intron (NR_131014, intron 1 of 1)	3510.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155276390-4	chr2	155275912	155276912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025735)	promoter-TSS (NM_025735)	48.0	NR_046364	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	12.5	4.0	10.5	24.5	32.5	22.0
Merged-chr9-21131361-4	chr9	21130851	21131851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018793)	promoter-TSS (NM_018793)	-76.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92742534-4	chr1	92742001	92743001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89144.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-94595957-4	chr3	94595461	94596461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44A|LTR|ERVK	-13245.0	NM_029721	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	5.0	21.0	10.0	18.0	29.0	11.5
Merged-chr5-32460513-2	chr5	32460013	32461013	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172707, intron 1 of 7)	intron (NM_172707, intron 1 of 7)	1543.0	NM_172707	19046.0	Mm.241931	NM_172707	ENSMUSG00000014956	Ppp1cb	1200010B19	protein phosphatase 1, catalytic subunit, beta isoform	protein-coding	0.0	6.5	4.5	0.0	1.5	5.0
Merged-chr7-144915076-4	chr7	144914523	144915523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347537)	promoter-TSS (NM_001347537)	-77.0	NM_001357868	72284.0	Mm.273049	NM_028184	ENSMUSG00000031072	Oraov1	2210010N10Rik|TAOS1	oral cancer overexpressed 1	protein-coding	16.0	49.0	17.5	12.5	32.5	13.0
Merged-chr8-69088639-4	chr8	69088128	69089128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007509)	promoter-TSS (NM_007509)	-108.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	45.5	129.0	100.5	75.5	130.0	108.0
Merged-chr11-48856971-4	chr11	48856459	48857459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14461.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-55846356-4	chr7	55845855	55846855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 1 of 30)	ORR1C2|LTR|ERVL-MaLR	4284.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-34304069-2	chr16	34303569	34304569	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 9 of 59)	intron (NM_177357, intron 9 of 59)	209958.0	NM_001164268	545156.0	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145121115-4	chr6	145120623	145121623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008511)	promoter-TSS (NM_008511)	-616.0	NM_008511	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	205.5	409.0	346.0	173.5	508.5	294.0
Merged-chr18-36328834-4	chr18	36328326	36329326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19798.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-178319468-1	chr1	178318968	178319968	+	1000.0	f0_balb.idr	intron (NM_025511, intron 1 of 3)	PB1D10|SINE|Alu	315.0	NM_025511	66359.0	Mm.489720	NM_025511	ENSMUSG00000026500	Cox20	2310005N03Rik|Fam36a	COX20 Cox2 chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-46009851-4	chr9	46009336	46010336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357241, intron 1 of 5)	MIR|SINE|MIR	2854.0	NM_001357241	18475.0	Mm.200859	NM_008775	ENSMUSG00000003131	Pafah1b2	2610005M20Rik|AI747451|AU021353|Pafahb|mus[b]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47813519-4	chr6	47813033	47814033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009787)	promoter-TSS (NM_009787)	-21.0	NM_009787	12304.0	Mm.2442	NM_009787	ENSMUSG00000025823	Pdia4	AI987846|Cai|ERp-72|Erp72	protein disulfide isomerase associated 4	protein-coding	56.5	152.0	129.0	59.5	105.0	76.0
Merged-chr11-51858820-4	chr11	51858300	51859300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1170.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80081170-4	chr11	80080719	80081719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277106)	promoter-TSS (NM_001277106)	-228.0	NM_018776	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-116921686-8	chr8	116921169	116922169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028131)	promoter-TSS (NM_028131)	-71.0	NM_028131	72155.0	Mm.23185	NM_028131	ENSMUSG00000031756	Cenpn	2610510J17Rik|AI426416|AW545024	centromere protein N	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-70964956-4	chr2	70964458	70965458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001110512, exon 9 of 9)	3' UTR (NM_001110512, exon 9 of 9)	53416.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-79466309-4	chr7	79465813	79466813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017462)	promoter-TSS (NM_017462)	-40.0	NM_017462	18975.0	Mm.3616	NM_017462	ENSMUSG00000039176	Polg	AA409516|PolgA	polymerase (DNA directed), gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-90723352-2	chr6	90722852	90723852	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356440, intron 1 of 13)	MamRep434|DNA|TcMar-Tigger	-6823.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97396778-4	chr6	97396274	97397274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	62512.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	19.0	94.0	75.5	19.0	96.0	74.0
Merged-chr2-166045221-4	chr2	166044712	166045712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 2 of 22)	intron (NM_008679, intron 2 of 22)	52575.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	5.0	27.0	22.0	16.0	27.0	11.0
Merged-chr14-66867537-2	chr14	66867037	66868037	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009955, intron 1 of 13)	CpG	1063.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59041219-4	chr15	59040709	59041709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	40817.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103504932-2	chr2	103504432	103505432	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19779.0	NM_009804	12359.0	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	24.5	40.5	22.0	27.0	27.5	34.5
Merged-chr19-47133284-4	chr19	47132783	47133783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133746, intron 2 of 2)	intron (NM_133746, intron 2 of 2)	5011.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	7.0	21.0	19.5	3.5	18.5	10.5
Merged-chr6-145341421-4	chr6	145340920	145341920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-46205.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	176.0	479.0	377.0	215.0	494.5	424.5
Merged-chr6-93068036-1	chr6	93067536	93068536	+	1000.0	f0_balb.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	127454.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145267900-4	chr4	145267396	145268396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21026.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73041948-4	chr2	73041453	73042453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61507.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-140941501-4	chr7	140941009	140942009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153832, exon 1 of 12)	non-coding (NR_153832, exon 1 of 12)	118.0	NM_145387	212974.0	Mm.260139	NM_145387	ENSMUSG00000062031	Pgghg	5730511L01Rik|Athl1|BC023151	protein glucosylgalactosylhydroxylysine glucosidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131021142-4	chr1	131020622	131021622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010548, intron 2 of 4)	intron (NM_010548, intron 2 of 4)	1277.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	0.5	2.0	3.0	0.0	6.5	5.5
Merged-chr8-83657012-4	chr8	83656535	83657535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018771, intron 1 of 6)	L2|LINE|L2	4357.0	NM_018771	67903.0	Mm.20945	NM_018771	ENSMUSG00000019433	Gipc1	GIPC|Glut1CIP|Rgs19ip1|Semcap1|TIP-2|TaxIP2	GIPC PDZ domain containing family, member 1	protein-coding	35.5	57.5	70.0	5.5	20.0	38.5
Merged-chr8-68926695-4	chr8	68926162	68927162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46107.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	68.0	149.5	88.5	44.0	149.5	85.0
Merged-chr7-101348015-4	chr7	101347506	101348506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040111)	promoter-TSS (NM_001040111)	-63.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	13.0	1.5	11.0	7.5	23.0	19.5
Merged-chr5-31048404-7	chr5	31047912	31048912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177870)	promoter-TSS (NM_177870)	150.0	NM_001177621	330064.0	Mm.205463	NM_177870	ENSMUSG00000006641	Slc5a6	E430023I20	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-16086733-4	chr4	16086212	16087212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72824.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88362162-4	chr8	88361651	88362651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012047)	promoter-TSS (NM_012047)	40.0	NM_012047	26992.0	Mm.5400	NM_012047	ENSMUSG00000031660	Brd7	BP75|CELTIX1|Ptpn13ip	bromodomain containing 7	protein-coding	9.0	44.5	43.0	11.5	33.0	38.0
Merged-chr10-119062203-4	chr10	119061714	119062714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11715.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168230538-4	chr2	168230108	168231108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310084)	promoter-TSS (NM_001310084)	-14.0	NM_001160330	69372.0	Mm.482182	NM_001160330	ENSMUSG00000074576	Mocs3	1700020H17Rik|Uba4	molybdenum cofactor synthesis 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58729203-2	chr1	58728703	58729703	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207653, intron 3 of 9)	intron (NM_207653, intron 3 of 9)	-1349.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29647757-4	chr19	29647279	29648279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362131, intron 1 of 14)	intron (NM_001362131, intron 1 of 14)	636.0	NM_001081213	226090.0	Mm.267131	NM_001081213	ENSMUSG00000046324	Ermp1	D19Ertd410e|D19Wsu12e|Fxna|b2b2633Clo|mKIAA1815	endoplasmic reticulum metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116615941-5	chr11	116615535	116616535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	8217.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101356759-4	chr4	101356250	101357250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040708)	promoter-TSS (NR_040708)	-502.0	NR_040708	77866.0	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102948709-4	chr2	102948211	102949211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47046.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28825165-4	chr7	28824639	28825639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016772)	promoter-TSS (NM_016772)	-199.0	NM_016772	51798.0	Mm.291776	NM_016772	ENSMUSG00000053898	Ech1	AA617331	enoyl coenzyme A hydratase 1, peroxisomal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20127705-4	chr13	20127189	20128189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	37182.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94360890-4	chr10	94360388	94361388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	L1M4|LINE|L1	48939.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-112232826-4	chr2	112232319	112233319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7022.0	NM_207206	99010.0	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94462918-4	chr10	94462438	94463438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-51919.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31127396-4	chr2	31126898	31127898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 1 of 15)	RMER10A|LTR|ERVL	14610.0	NM_001355106	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96618395-4	chr10	96617913	96618913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007569, exon 2 of 2)	exon (NM_007569, exon 2 of 2)	1412.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116671285-2	chr11	116670785	116671785	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027819)	promoter-TSS (NR_027819)	-375.0	NR_027821	66293.0	Mm.432051	NM_025472	ENSMUSG00000020812	1810032O08Rik	-	RIKEN cDNA 1810032O08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-60657244-4	chr1	60656743	60657743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89145.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	17.0	34.5	36.0	17.0	47.0	21.5
Merged-chr10-117376984-4	chr10	117376484	117377484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310609)	promoter-TSS (NM_001310609)	-11.0	NM_001310609	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	6.0	48.5	27.0	21.0	23.0	22.0
Merged-chr13-49242904-4	chr13	49242391	49243391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028340, intron 1 of 4)	intron (NM_028340, intron 1 of 4)	5403.0	NM_001360772	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33629392-4	chr17	33628887	33629887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026712, intron 1 of 5)	intron (NM_026712, intron 1 of 5)	295.0	NM_026712	328801.0	Mm.181488	NM_026712	ENSMUSG00000073423	Zfp414	0610030H11Rik|Znf414	zinc finger protein 414	protein-coding	32.5	63.0	52.0	34.5	103.5	59.5
Merged-chr2-146134478-3	chr2	146133977	146134977	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87520.0	NM_016889	53626.0	Mm.379070	NM_016889	ENSMUSG00000068154	Insm1	IA-1	insulinoma-associated 1	protein-coding	5.5	4.0	14.0	6.5	13.5	11.5
Merged-chr9-107338409-4	chr9	107337915	107338915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133984)	promoter-TSS (NM_133984)	-65.0	NM_133984	69536.0	Mm.259467	NM_133984	ENSMUSG00000032579	Hemk1	2310008M14Rik|AW049265	HemK methyltransferase family member 1	protein-coding	19.5	19.5	17.5	6.5	43.0	21.5
Merged-chr17-23771672-4	chr17	23771163	23772163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153791)	promoter-TSS (NM_153791)	-61.0	NM_001357994	224613.0	Mm.328835	NM_153791	ENSMUSG00000040097	Flywch1	E030034P13Rik|mKIAA1552	FLYWCH-type zinc finger 1	protein-coding	34.5	57.0	78.0	30.0	55.5	32.5
Merged-chr13-42073461-4	chr13	42072939	42073939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	21418.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70865703-2	chr14	70865202	70866202	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045939, intron 2 of 3)	intron (NR_045939, intron 2 of 3)	12769.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	2.0	8.0	2.0	9.5	15.5	0.0
Merged-chr9-119982526-4	chr9	119982015	119983015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153287, intron 1 of 4)	intron (NM_153287, intron 1 of 4)	508.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109692921-4	chr8	109692431	109693431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155034, intron 1 of 10)	CpG	363.0	NR_155034	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50462557-4	chr9	50462049	50463049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31976.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-33824235-4	chr6	33823741	33824741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 12 of 17)	intron (NM_009148, intron 12 of 17)	-205207.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-101886226-4	chr2	101885761	101886761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029635)	promoter-TSS (NM_029635)	-1.0	NM_029635	76501.0	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	25.5	30.5	26.0	23.5	34.0	21.0
Merged-chr2-103955879-4	chr2	103955391	103956391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-2104.0	NM_001142337	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-125085146-4	chr4	125084682	125085682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290701)	promoter-TSS (NM_001290701)	48.0	NR_151472	70088.0	Mm.291214	NM_027310	ENSMUSG00000028863	Meaf6	2310005N01Rik|2810036M01Rik	MYST/Esa1-associated factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97436104-4	chr11	97435652	97436652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14008.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	57.5	118.5	72.0	47.0	116.5	61.5
Merged-chr2-152398188-4	chr2	152397675	152398675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011438)	promoter-TSS (NM_011438)	-129.0	NM_011438	20667.0	Mm.28424	NM_011438	ENSMUSG00000051817	Sox12	2010205A02Rik	SRY (sex determining region Y)-box 12	protein-coding	0.5	1.0	0.5	1.0	0.5	1.5
Merged-chr3-34019976-4	chr3	34019471	34020471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113188)	promoter-TSS (NM_001113188)	-108.0	NM_008053	14359.0	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	70.0	99.0	89.5	50.5	67.0	91.0
Merged-chr3-30995831-4	chr3	30995355	30996355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008857)	promoter-TSS (NM_008857)	84.0	NM_008857	18759.0	Mm.291554	NM_008857	ENSMUSG00000037643	Prkci	2310021H13Rik|AI427505|PKClambda|Pkci|Pkcl|Prkcl|aPKClambda|mKIAA4165	protein kinase C, iota	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46782609-4	chr17	46782076	46783076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025433)	promoter-TSS (NM_025433)	80.0	NM_025433	66229.0	Mm.218533	NM_025433	ENSMUSG00000063888	Rpl7l1	1500016H10Rik	ribosomal protein L7-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25649938-4	chr7	25649420	25650420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007533, intron 1 of 8)	intron (NM_007533, intron 1 of 8)	8841.0	NM_007533	12039.0	Mm.25848	NM_007533	ENSMUSG00000060376	Bckdha	-	branched chain ketoacid dehydrogenase E1, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3932072-4	chr11	3931556	3932556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015749)	promoter-TSS (NM_015749)	-12.0	NM_015749	21452.0	Mm.20948	NM_015749	ENSMUSG00000020432	Tcn2	AW208754|Tcn-2	transcobalamin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57290385-5	chr17	57289893	57290893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 1 of 25)	intron (NM_001163816, intron 1 of 25)	11293.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82889927-2	chr11	82889427	82890427	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277941, intron 2 of 8)	intron (NM_001277941, intron 2 of 8)	697.0	NR_102719	19364.0	Mm.9286	NM_011235	ENSMUSG00000018841	Rad51d	R51H3|Rad51l3|TRAD|Trad-d5	RAD51 paralog D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-98046579-4	chr3	98046090	98047090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	MIR3|SINE|MIR	33052.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-82757803-2	chr16	82757303	82758303	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13C2|LTR|ERVK	1557106.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51584745-4	chr11	51584266	51585266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028398)	promoter-TSS (NM_028398)	9.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131290851-2	chr1	131290351	131291351	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 22 of 22)	intron (NM_001081011, intron 22 of 22)	-11288.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	1.0	0.0	4.0	0.0	4.0	3.5
Merged-chr1-69684456-2	chr1	69683956	69684956	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011770, intron 1 of 7)	intron (NM_011770, intron 1 of 7)	1504.0	NM_011770	22779.0	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-44101067-4	chr17	44100554	44101554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357997, intron 3 of 3)	intron (NM_001357997, intron 3 of 3)	4754.0	NM_199016	224794.0	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	39.5	95.0	24.5	25.5	52.0	28.0
Merged-chr1-154006258-4	chr1	154005736	154006736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	106307.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-96082531-4	chr16	96082043	96083043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176928)	promoter-TSS (NM_176928)	-115.0	NM_145125	93871.0	Mm.240871	NM_145125	ENSMUSG00000022914	Brwd1	5330419I02Rik|D530019K20Rik|G1-403-16|Wdr9|repro5	bromodomain and WD repeat domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-113565802-4	chr11	113565295	113566295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166503)	promoter-TSS (NM_001166503)	20.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69997337-4	chr11	69996841	69997841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291127)	promoter-TSS (NM_001291127)	-121.0	NM_001291127	78246.0	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180601924-4	chr1	180601411	180602411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007415)	TTS (NM_007415)	14710.0	NR_105869	102466761.0		NR_105869	ENSMUSG00000098926	Mir6904	Gm27426|mmu-mir-6904	microRNA 6904	ncRNA	4.0	0.0	3.5	3.0	5.5	1.5
Merged-chr10-96435330-4	chr10	96434815	96435815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-181686.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5097446-4	chr18	5096932	5097932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153153, exon 24 of 35)	exon (NM_153153, exon 24 of 35)	50843.0	NM_001347449	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5803801-4	chr13	5803304	5804304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54288.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123016582-4	chr4	123016087	123017087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025873)	promoter-TSS (NM_025873)	-6.0	NM_025873	66966.0	Mm.235030	NM_025873	ENSMUSG00000028653	Trit1	2310075G14Rik|AI314189|AI314635|AV099619|IPPT|IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-118472710-4	chr1	118472228	118473228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359330, intron 8 of 39)	intron (NM_001359330, intron 8 of 39)	-13463.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49984134-4	chr11	49983649	49984649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-41182.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134313658-4	chr5	134313164	134314164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359066, intron 1 of 32)	CpG	1096.0	NM_001359063	14886.0	Mm.261570	NM_010365	ENSMUSG00000060261	Gtf2i	6030441I21Rik|BAP-135|Diws1t|GtfII-I|Spin|TFII-I|WBSCR6	general transcription factor II I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-92669097-7	chr7	92668563	92669563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029078, intron 1 of 15)	intron (NM_029078, intron 1 of 15)	849.0	NM_029078	74737.0	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-4758136-4	chr5	4757638	4758638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021457)	promoter-TSS (NM_021457)	78.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	6.0	3.0	3.0	0.0	0.0	0.0
Merged-chr4-63815868-4	chr4	63815376	63816376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	45408.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-106486196-5	chr3	106485690	106486690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033207)	promoter-TSS (NR_033207)	150.0	NM_028110	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	10.5	16.5	18.5	25.5	28.5	22.5
Merged-chr14-45329706-4	chr14	45329207	45330207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025959)	promoter-TSS (NM_025959)	-117.0	NM_025959	67089.0	Mm.18472	NM_025959	ENSMUSG00000021832	Psmc6	2300001E01Rik|AI451058	proteasome (prosome, macropain) 26S subunit, ATPase, 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67425852-4	chr7	67425361	67426361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53003.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	55.5	101.0	82.5	37.0	114.0	86.0
Merged-chr4-56864930-2	chr4	56864430	56865430	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018761, intron 1 of 18)	CpG	281.0	NM_018761	54366.0	Mm.218891	NM_018761	ENSMUSG00000038816	Ctnnal1	ACRP|AI616177|AW545119|C86009|Catnal1	catenin (cadherin associated protein), alpha-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-60983826-4	chr8	60983327	60984327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007711)	promoter-TSS (NM_007711)	-516.0	NM_173874	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	47.0	105.0	89.5	45.5	92.0	121.0
Merged-chr11-23307243-2	chr11	23306743	23307743	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190401, intron 1 of 79)	CpG-1781	348.0	NM_001190401	17847.0	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-39449444-4	chr7	39448968	39449968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243021)	promoter-TSS (NM_001243021)	-50.0	NM_001243021	233147.0	Mm.148946	NM_001243021	ENSMUSG00000030424	Zfp939	9430025M13Rik	zinc finger protein 939	protein-coding	41.0	86.0	108.5	16.0	76.5	59.0
Merged-chr7-67951780-4	chr7	67951254	67952254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010513)	promoter-TSS (NM_010513)	-503.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55658761-4	chr19	55658251	55659251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	43453.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	1.5	15.0	5.0	5.0	11.0	7.0
Merged-chr16-75592877-4	chr16	75592391	75593391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198302)	promoter-TSS (NM_198302)	0.0	NM_198302	224344.0	Mm.273214	NM_198302	ENSMUSG00000032940	Rbm11	A330018F01	RNA binding motif protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145855869-4	chr6	145855363	145856363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9557.0	NM_024469	79362.0	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	5.0	0.0	1.5	0.0	1.0	1.0
Merged-chr13-109822649-4	chr13	109822139	109823139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 7 of 16)	intron (NM_011056, intron 7 of 16)	-81170.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9641164-4	chr4	9640655	9641655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	2562.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	14.0	7.0	4.5	0.0	6.5	9.0
Merged-chr10-117397348-4	chr10	117396827	117397827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-20354.0	NM_001310609	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	31.5	34.5	42.0	4.5	39.0	17.0
Merged-chr18-4309059-2	chr18	4308559	4309559	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	43894.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115361115-4	chr6	115360644	115361644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308352)	promoter-TSS (NM_001308352)	0.0	NM_001308352	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106230153-4	chr9	106229632	106230632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7534.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	66.5	87.5	115.5	33.5	140.0	77.5
Merged-chr7-107595743-2	chr7	107595243	107596243	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008905, intron 1 of 24)	intron (NM_008905, intron 1 of 24)	692.0	NM_008905	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85235562-2	chr11	85235062	85236062	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025825)	promoter-TSS (NM_025825)	396.0	NR_028329	654810.0	Mm.209580	NR_028329	ENSMUSG00000085628	Appbp2os	D630032N06Rik	amyloid beta precursor protein (cytoplasmic tail) binding protein 2, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-118420611-2	chr13	118420113	118421113	+	1000.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-33361.0	NM_021556	59054.0	Mm.143810	NM_021556	ENSMUSG00000021731	Mrps30	2610020A16Rik|AA968347|PAP|Pdcd9	mitochondrial ribosomal protein S30	protein-coding	53.5	43.0	53.0	21.0	10.0	16.5
Merged-chr7-43919995-4	chr7	43919514	43920514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13757.0	NM_174865	317652.0	Mm.389896	NM_174865	ENSMUSG00000055193	Klk15	-	kallikrein related-peptidase 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129180530-4	chr6	129180027	129181027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053109)	promoter-TSS (NM_053109)	-88.0	NM_053109	93694.0	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	59.5	107.0	72.5	63.5	119.0	71.0
Merged-chr2-98662333-4	chr2	98661833	98662833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	1194676.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-57541614-4	chr8	57541099	57542099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 6 of 11)	intron (NM_001167981, intron 6 of 11)	29756.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145037167-4	chr4	145036670	145037670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 65 of 69)	intron (NM_001276465, intron 65 of 69)	144033.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128645793-2	chr10	128645293	128646293	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152728)	promoter-TSS (NR_152728)	-91.0	NR_152728	102633634.0	Mm.406455	NR_152728		Gm26876	-	predicted gene, 26876	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12651001-4	chr13	12650496	12651496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003568)	promoter-TSS (NR_003568)	-601.0	NR_003568	664862.0	Mm.415635	NR_003568		Gpr137b-ps	2310041G17Rik	G protein-coupled receptor 137B, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53122043-4	chr4	53121566	53122566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	37829.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-66816558-1	chr1	66816058	66817058	+	1000.0	f0_c57.idr	intron (NM_001357156, intron 1 of 14)	CpG	1037.0	NM_177645	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25634588-4	chr14	25634090	25635090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 6 of 23)	intron (NM_183208, intron 6 of 23)	31077.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-68879287-4	chr2	68878771	68879771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	MTEa|LTR|ERVL-MaLR	17830.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-14013065-4	chr14	14012597	14013597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_139227, exon 2 of 12)	exon (NM_139227, exon 2 of 12)	606.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-59229195-4	chr7	59228744	59229744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_173010, exon 1 of 9)	5' UTR (NM_173010, exon 1 of 9)	494.0	NM_173010	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25756252-4	chr7	25755749	25756749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001190974)	TTS (NM_001190974)	-1490.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-76951630-4	chr5	76951136	76952136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172146)	promoter-TSS (NM_172146)	-58.0	NM_172146	231327.0	Mm.202337	NM_172146	ENSMUSG00000029246	Ppat	5730454C12Rik|AA408689|AA675351|AI507113|C79945	phosphoribosyl pyrophosphate amidotransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88390696-6	chr4	88390195	88391195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081184, intron 35 of 43)	intron (NM_001081184, intron 35 of 43)	48231.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	29.5	39.5	39.0	15.5	45.5	18.0
Merged-chr11-54237193-4	chr11	54236665	54237665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12734.0	NM_009969	12981.0	Mm.4922	NM_009969	ENSMUSG00000018916	Csf2	CSF|Csfgm|GMCSF|Gm-CSf|MGI-IGM	colony stimulating factor 2 (granulocyte-macrophage)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11322917-4	chr16	11322431	11323431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028964)	promoter-TSS (NM_028964)	27.0	NM_028964	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136136869-2	chr5	136136369	136137369	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027891)	promoter-TSS (NM_027891)	534.0	NM_001359416	72041.0	Mm.294725	NM_028070	ENSMUSG00000039754	Alkbh4	2010004B12Rik|Abj4	alkB homolog 4, lysine demethylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130563739-4	chr2	130563255	130564255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040348)	promoter-TSS (NR_040348)	-2.0	NM_207207	99045.0	Mm.30057	NM_207207	ENSMUSG00000037740	Mrps26	AI648866|GI008|MRP-S13|MRP-S26|Rpms13	mitochondrial ribosomal protein S26	protein-coding	22.0	60.5	41.5	14.0	29.0	40.0
Merged-chr17-70998292-2	chr17	70997792	70998792	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357820)	promoter-TSS (NM_001357820)	-280.0	NM_001357820	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	0.0	0.5	0.0	0.5	0.0	1.0
Merged-chr6-113308501-4	chr6	113308002	113309002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282128, intron 1 of 13)	intron (NM_001282128, intron 1 of 13)	1365.0	NM_001282126	78783.0	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115660565-2	chr11	115660065	115661065	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	-32270.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81233111-4	chr10	81232579	81233579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034895)	promoter-TSS (NM_001034895)	-84.0	NM_001034895	103406.0	Mm.158783	NM_001034895	ENSMUSG00000034949	Zfr2	2010013I23Rik|9130206N08Rik|AW045600|mKIAA1086	zinc finger RNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-65358472-4	chr14	65357967	65358967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199029)	promoter-TSS (NM_199029)	-209.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33954468-1	chr17	33953968	33954968	+	1000.0	f1_balb.idr	intron (NM_011296, intron 2 of 4)	intron (NM_011296, intron 2 of 4)	1173.0	NM_011296	20084.0	Mm.298745	NM_011296	ENSMUSG00000008668	Rps18	H-2Ke3|H2-Ke3|Ke-3|ke3	ribosomal protein S18	protein-coding	54.0	100.0	57.5	21.0	94.0	50.5
Merged-chr10-8873793-3	chr10	8873290	8874290	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	L2|LINE|L2	12280.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.0	9.5	5.0	1.5	9.5	5.5
Merged-chr15-96654931-4	chr15	96654418	96655418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-12005.0	NM_001166458	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-24020420-4	chr18	24019930	24020930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357447)	promoter-TSS (NM_001357447)	-60.0	NM_001357447	59057.0	Mm.417427	NM_021559	ENSMUSG00000051469	Zfp24	3526401F17Rik|5033419P20Rik|AI480505|AI642085|AL024422|KOX17|ZF-12|Zfp191|Znf24	zinc finger protein 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-33336105-2	chr5	33335605	33336605	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021500, intron 1 of 8)	CpG	533.0	NM_021500	59003.0	Mm.138617	NM_021500	ENSMUSG00000079562	Maea	1110030D19Rik|EMP|Gid9	macrophage erythroblast attacher	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87035962-4	chr1	87035461	87036461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172157, intron 15 of 21)	intron (NM_001172157, intron 15 of 21)	53967.0	NM_007433	11650.0	Mm.195224	NM_007433	ENSMUSG00000026246	Alppl2	Akp5|C77216|D1Ertd816e|EAP	alkaline phosphatase, placental-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-99100918-4	chr4	99100400	99101400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026082, intron 1 of 47)	intron (NM_026082, intron 1 of 47)	20015.0	NM_001290636	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	1.5	0.0	0.0	0.0	0.0	1.5
Merged-chr15-44427515-4	chr15	44427025	44428025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175009)	promoter-TSS (NM_175009)	-586.0	NM_175009	223527.0	Mm.291828	NM_175009	ENSMUSG00000022338	Eny2	1810057B09Rik|6720481I12|DC6|Ey2	ENY2 transcription and export complex 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6334987-4	chr15	6334471	6335471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	35182.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70432491-4	chr11	70431972	70432972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271360)	promoter-TSS (NM_001271360)	-108.0	NM_001271360	216869.0	Mm.203747	NM_145429	ENSMUSG00000060216	Arrb2	AI326910|AW122872|Arr3	arrestin, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-112239721-4	chr2	112239228	112240228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207206)	promoter-TSS (NM_207206)	-113.0	NM_207206	99010.0	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141016987-4	chr7	141016509	141017509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033632)	promoter-TSS (NM_001033632)	-117.0	NM_001033632	213002.0	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70442096-4	chr11	70441580	70442580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3825.0	NR_106064	102465670.0		NR_106064	ENSMUSG00000099109	Mir7115	Gm27902|mmu-mir-7115	microRNA 7115	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118662048-2	chr9	118661548	118662548	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 7 of 27)	ORR1E|LTR|ERVL-MaLR	-49644.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	38.5	44.5	31.0	13.0	44.0	41.0
Merged-chr9-65565048-4	chr9	65564516	65565516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 2 of 5)	RMER15|LTR|ERVL	15071.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	67.5	85.0	88.5	53.5	127.0	102.0
Merged-chr1-87608562-4	chr1	87608060	87609060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11752.0	NM_001110193	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-113709105-4	chr9	113708586	113709586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164677)	promoter-TSS (NM_001164677)	-827.0	NM_011052	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	24.5	99.0	47.0	30.5	61.5	59.0
Merged-chr3-100442680-4	chr3	100442194	100443194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	16289.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-79615276-4	chr17	79614776	79615776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201361, intron 1 of 10)	CpG	376.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-128016321-4	chr1	128015823	128016823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 7 of 20)	intron (NM_001285945, intron 7 of 20)	86148.0	NM_027678	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	12.5	23.5	12.5	9.0	6.0	7.0
Merged-chr17-34605808-4	chr17	34605319	34606319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163379)	promoter-TSS (NM_001163379)	-42.0	NM_001163379	55979.0	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29251365-4	chr19	29250870	29251870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008413)	promoter-TSS (NM_008413)	-433.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132578214-4	chr2	132577715	132578715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291052)	promoter-TSS (NM_001291052)	33.0	NM_001291050	74182.0	Mm.211211	NM_027096	ENSMUSG00000027346	Gpcpd1	2310004G06Rik|2310032D16Rik|AU015213|Gde5|Prei4|mKIAA1434	glycerophosphocholine phosphodiesterase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86079541-4	chr12	86079049	86080049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009368)	promoter-TSS (NM_009368)	-508.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191351267-4	chr1	191350772	191351772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_144880)	TTS (NM_144880)	25307.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46454868-4	chr11	46454362	46455362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134250)	promoter-TSS (NM_134250)	-69.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	5.5	8.5	7.5	9.5	20.0	11.0
Merged-chr8-46932068-4	chr8	46931552	46932552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D5|LTR|ERVK	-54835.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97211319-4	chr7	97210811	97211811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	114653.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	42.5	110.5	92.0	35.5	54.5	54.0
Merged-chr7-19844758-4	chr7	19844262	19845262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7241.0	NM_001270489	100502736.0	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-98296655-4	chr9	98296175	98297175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357446, exon 1 of 4)	5' UTR (NM_001357446, exon 1 of 4)	105.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	16.0	37.5	30.5	26.0	34.0	35.0
Merged-chr10-8881958-4	chr10	8881498	8882498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	4072.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	125.0	289.0	162.0	140.5	289.0	189.5
Merged-chr5-113945385-4	chr5	113944877	113945877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198109, intron 14 of 14)	intron (NM_198109, intron 14 of 14)	-36671.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	1.5	0.0	1.5	0.0	0.5	2.0
Merged-chr8-11098596-4	chr8	11098099	11099099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90169.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80255546-1	chr15	80255046	80256046	+	1000.0	f0_balb.idr	5' UTR (NM_009716, exon 1 of 3)	5' UTR (NM_009716, exon 1 of 3)	362.0	NM_009716	11911.0	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	116.0	216.0	194.5	97.5	272.0	177.5
Merged-chr10-30600667-4	chr10	30600174	30601174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028604)	promoter-TSS (NM_028604)	26.0	NM_028604	73681.0	Mm.294503	NM_028604	ENSMUSG00000019792	Trmt11	2410075D05Rik|3110045I18Rik|AW213713	tRNA methyltransferase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106716794-4	chr11	106716308	106717308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1527.0	NM_001305157	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26640493-7	chr2	26639971	26640971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024068)	promoter-TSS (NR_024068)	-227.0	NR_024068	72091.0	Mm.27103	NR_024068		Snhg7	2610002F03Rik|AI427062	small nucleolar RNA host gene 7	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35046839-4	chr17	35046317	35047317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146215)	promoter-TSS (NM_001146215)	-72.0	NM_001146215	17687.0	Mm.24192	NM_013600	ENSMUSG00000007035	Msh5	Mut5	mutS homolog 5	protein-coding	18.0	29.5	15.0	9.5	46.5	23.0
Merged-chr1-40240658-4	chr1	40240160	40241160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008362, intron 1 of 10)	intron (NM_008362, intron 1 of 10)	15580.0	NM_008362	16177.0	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8067082-4	chr10	8066582	8067582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110959.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	8.0	6.5	7.5	0.5	12.5	10.5
Merged-chr7-24463319-2	chr7	24462819	24463819	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011113, intron 1 of 6)	MIR|SINE|MIR	836.0	NM_011113	18793.0	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-87407677-4	chr12	87407148	87408148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19293.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-98979914-4	chr9	98979419	98980419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6454.0	NM_011810	23873.0	Mm.74605	NM_011810	ENSMUSG00000032463	Faim	-	Fas apoptotic inhibitory molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114944147-2	chr11	114943647	114944647	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9761.0	NM_199221	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24351608-2	chr17	24351110	24352110	+	1000.0	f0_c57.idr|f1_balb.idr	promoter-TSS (NM_013855)	promoter-TSS (NM_013855)	-413.0	NM_013855	27410.0	Mm.239470	NM_013855	ENSMUSG00000024130	Abca3	1810036E22Rik|ABC-C|Abc3	ATP-binding cassette, sub-family A (ABC1), member 3	protein-coding	28.0	79.5	76.0	7.5	39.5	16.0
Merged-chr19-7558493-2	chr19	7557993	7558993	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362425, intron 2 of 4)	ID_B1|SINE|B4	1008.0	NM_001362425	225845.0	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	AdPLA|C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155245241-2	chr1	155244741	155245741	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86538.0	NM_021433	58244.0	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-18000326-4	chr5	17999819	18000819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 4 of 7)	intron (NM_001081143, intron 4 of 7)	37749.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66200001-4	chr14	66199507	66200507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 2 of 30)	intron (NM_001162366, intron 2 of 30)	13817.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3159532-2	chr11	3159033	3160033	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 10 of 32)	MTD|LTR|ERVL-MaLR	33930.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80702100-4	chr10	80701587	80702587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027829)	promoter-TSS (NM_027829)	-267.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116662371-1	chr3	116661871	116662871	+	1000.0	f0_c57.idr	intron (NM_008246, intron 1 of 11)	CpG	306.0	NM_008246	15247.0	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	80.5	132.0	126.0	93.5	147.5	135.0
Merged-chr10-22730977-2	chr10	22730477	22731477	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011603, intron 1 of 6)	CpG	470.0	NM_011603	237336.0	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-72429594-4	chr11	72429081	72430081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR55|LTR|ERVL?	-5945.0	NM_027819	71522.0	Mm.23336	NM_027819	ENSMUSG00000040471	Ggt6	9030405D14Rik|AI427679|AW490214	gamma-glutamyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68249510-4	chr10	68249024	68250024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	29202.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	53.5	203.0	89.0	74.5	200.5	118.0
Merged-chr6-85029118-4	chr6	85028626	85029626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 1 of 21)	intron (NM_177077, intron 1 of 21)	40387.0	NM_177077	75914.0	Mm.159621	NM_177077	ENSMUSG00000033769	Exoc6b	4930569O18Rik|G430127E12Rik|Sec15b|Sec15l2|mKIAA0919	exocyst complex component 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20060789-3	chr10	20060291	20061291	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 10 of 29)	intron (NM_008580, intron 10 of 29)	-88129.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47651025-6	chr6	47650527	47651527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4067.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	7.0	16.0	9.0	7.0	16.0	9.0
Merged-chr7-132366679-2	chr7	132366179	132367179	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-49451.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-107588482-4	chr8	107587967	107588967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010817)	promoter-TSS (NM_010817)	15.0	NM_010817	17463.0	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-79762495-2	chr1	79761951	79762951	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111279)	promoter-TSS (NM_001111279)	-682.0	NM_027057	69368.0	Mm.293273	NM_027057	ENSMUSG00000073643	Wdfy1	1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435	WD repeat and FYVE domain containing 1	protein-coding	65.0	232.0	159.5	24.5	61.5	61.5
Merged-chr16-91548158-4	chr16	91547659	91548659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008338, intron 1 of 6)	intron (NM_008338, intron 1 of 6)	1065.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	67.5	158.0	127.5	89.5	156.0	83.5
Merged-chr12-95749307-3	chr12	95748813	95749813	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	57087.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94549128-4	chr11	94548643	94549643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013381)	promoter-TSS (NM_001013381)	64.0	NM_001013381	237926.0	Mm.342275	NM_001013381	ENSMUSG00000039096	Rsad1	B430319G23|BC056485	radical S-adenosyl methionine domain containing 1	protein-coding	17.0	45.5	56.0	9.0	70.0	33.5
Merged-chr2-117386703-4	chr2	117386178	117387178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43801.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	23.0	59.0	36.0	35.0	97.5	59.0
Merged-chr3-90669101-4	chr3	90668618	90669618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013650)	promoter-TSS (NM_013650)	47.0	NM_013650	20201.0	Mm.21567	NM_013650	ENSMUSG00000056054	S100a8	60B8Ag|AI323541|B8Ag|CFAg|CP-10|Caga|MRP8|p8	S100 calcium binding protein A8 (calgranulin A)	protein-coding	23.0	49.0	50.0	22.5	83.5	64.0
Merged-chr3-63929337-4	chr3	63928804	63929804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357824)	promoter-TSS (NM_001357824)	168.0	NM_177856	329659.0	Mm.39342	NM_177856	ENSMUSG00000048581	E130311K13Rik	-	RIKEN cDNA E130311K13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-89310646-2	chr4	89310146	89311146	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007670, intron 1 of 1)	CpG	386.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	2.5	12.0	7.5	15.5	12.0	9.5
Merged-chr13-36282279-2	chr13	36281779	36282779	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 3 of 5)	intron (NM_001039189, intron 3 of 5)	164636.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167349360-4	chr2	167348877	167349877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019835)	promoter-TSS (NM_019835)	-199.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-26858490-4	chr14	26858010	26859010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-36094.0	NM_001170748	142687.0	Mm.138259	NM_080856	ENSMUSG00000021898	Asb14	Asb-14	ankyrin repeat and SOCS box-containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55836269-4	chr12	55835773	55836773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037756)	promoter-TSS (NM_001037756)	-93.0	NM_001037756	52592.0	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173409203-4	chr1	173408709	173409709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11395.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	18.5	27.5	10.5	15.0	9.0	10.0
Merged-chr2-23023939-4	chr2	23023439	23024439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	intron (NM_001077190, intron 1 of 10)	16302.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11000040-4	chr16	10999547	11000547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6926.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	48.0	102.0	52.0	82.5	188.0	90.5
Merged-chr5-134638630-2	chr5	134638130	134639130	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033561, intron 1 of 6)	CpG	779.0	NM_001312867	22384.0	Mm.27955	NM_033561	ENSMUSG00000040731	Eif4h	AU018978|D5Ertd355e|E430026L18Rik|Ef4h|Wbscr1|Wscr1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128887540-4	chr6	128887029	128888029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289707)	promoter-TSS (NM_001289707)	-58.0	NM_001289706	93675.0	Mm.391513	NM_020257	ENSMUSG00000030365	Clec2i	Clr-g|Clrg|Dcl1|LCL-1|OCILrP2	C-type lectin domain family 2, member i	protein-coding	18.0	31.5	40.5	11.5	66.5	17.0
Merged-chr11-82023525-2	chr11	82023025	82024025	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11B|LTR|ERVK	-12052.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118235159-4	chr11	118234716	118235716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	13376.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51481597-4	chr10	51481108	51482108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001291893, exon 3 of 8)	exon (NM_001291893, exon 3 of 8)	996.0	NM_001291892	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45414303-2	chr7	45413803	45414803	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198190, intron 1 of 2)	intron (NM_198190, intron 1 of 2)	608.0	NM_198190	78405.0	Mm.20344	NM_198190	ENSMUSG00000074121	Ntf5	2900040K06Rik|AI462899|NT-4|NT-5|NT4|NT4/5|Ntf-5|Ntf4	neurotrophin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40302271-4	chr10	40301757	40302757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007444)	promoter-TSS (NM_007444)	-69.0	NM_009665	11702.0	Mm.253533	NM_009665	ENSMUSG00000075232	Amd1	AdoMetDC|Amd-1|SAMDC|SAMDC 1|adoMetDC1	S-adenosylmethionine decarboxylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136492390-4	chr6	136491897	136492897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26454.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	6.0	15.5	0.5	1.0	6.0	0.5
Merged-chr9-113781740-2	chr9	113781240	113782240	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114347, intron 6 of 39)	Lx9|LINE|L1	-11590.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-100922218-4	chr3	100921729	100922729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165953)	promoter-TSS (NM_001165953)	-264.0	NM_001165952	229644.0	Mm.189351	NM_194343	ENSMUSG00000033233	Trim45	4921530N01Rik	tripartite motif-containing 45	protein-coding	73.5	119.0	138.5	79.0	128.0	119.5
Merged-chr11-60538024-4	chr11	60537539	60538539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172943, exon 1 of 4)	5' UTR (NM_172943, exon 1 of 4)	356.0	NM_172943	268420.0	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34054566-4	chr11	34054059	34055059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 3 of 20)	intron (NM_010696, intron 3 of 20)	7631.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-33658038-4	chr5	33657539	33658539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310541)	promoter-TSS (NM_001310541)	-62.0	NM_001356985	68366.0	Mm.491151	NM_026698	ENSMUSG00000019295	Tmem129	0610039G24Rik|2410015J15Rik|AA409575	transmembrane protein 129	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11001884-4	chr16	11001392	11002392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7006.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27861064-4	chr7	27860539	27861539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024726, intron 1 of 4)	intron (NM_001024726, intron 1 of 4)	454.0	NM_001024726	545938.0	Mm.458180	NM_001024726	ENSMUSG00000020420	Zfp607a	4732475C15Rik|Zfp607	zinc finger protein 607A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80938839-4	chr12	80938338	80939338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6561.0	NR_045057	100504661.0	Mm.442322	NR_045057	ENSMUSG00000112880	Gm20337	-	predicted gene, 20337	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145888166-4	chr2	145887667	145888667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028724)	TTS (NM_028724)	-15074.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	63.5	194.5	170.5	62.0	179.0	172.0
Merged-chr4-21727739-4	chr4	21727289	21728289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290420)	promoter-TSS (NM_001290420)	88.0	NM_001290420	51813.0	Mm.278584	NM_016746	ENSMUSG00000028252	Ccnc	AI451004|AU020987|CG1C	cyclin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27926651-4	chr15	27926155	27927155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	99193.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21995465-4	chr16	21994977	21995977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083894)	promoter-TSS (NM_001083894)	65.0	NM_001289582	239759.0	Mm.33192	NM_153404	ENSMUSG00000044626	Liph	C130037N08Rik|D16Wsu119e|H06|Lpdlr|P3|PLA1B|lpd1|lpd2|mPA-PLA1	lipase, member H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91937284-2	chr2	91936784	91937784	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166597, intron 21 of 31)	intron (NM_001166597, intron 21 of 31)	-4987.0	NM_010784	17242.0	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr1-35765891-2	chr1	35765391	35766391	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-302509.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12307918-4	chr17	12307449	12308449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357722, intron 1 of 25)	intron (NM_001357722, intron 1 of 25)	10711.0	NM_011948	26407.0	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-90225019-4	chr11	90224528	90225528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24448.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-88599620-4	chr9	88599130	88600130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040766)	promoter-TSS (NR_040766)	-387.0	NR_040766	320692.0	Mm.427378	NR_040766	ENSMUSG00000097073	9430037G07Rik	-	RIKEN cDNA 9430037G07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127662256-4	chr10	127661773	127662773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122895, intron 5 of 5)	intron (NM_001122895, intron 5 of 5)	4430.0	NM_001122895	17937.0	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-13838742-4	chr6	13838267	13839267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001330666, exon 2 of 4)	5' UTR (NM_001330666, exon 2 of 4)	1175.0	NM_001330666	64450.0	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59321308-2	chr10	59320808	59321808	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1B|DNA|hAT-Tip100	-1988.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-59345881-4	chr19	59345390	59346390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033222)	promoter-TSS (NM_001033222)	-110.0	NM_001033222	107368.0	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110780614-4	chr5	110780119	110781119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347390)	promoter-TSS (NM_001347390)	-4.0	NM_001025562	56361.0	Mm.23528	NM_019700	ENSMUSG00000029507	Pus1	A730013B20Rik|MPUS1|mPus1p	pseudouridine synthase 1	protein-coding	47.5	71.5	59.0	27.0	68.0	53.5
Merged-chr8-4238753-4	chr8	4238268	4239268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164172)	promoter-TSS (NM_001164172)	28.0	NM_001164172	26400.0	Mm.3906	NM_011944	ENSMUSG00000002948	Map2k7	5930412N11Rik|JNKK 2|Jnkk2|MAPKK 7|MEK 7|Mapkk7|Mek7|Mkk7|Prkmk7|sek2	mitogen-activated protein kinase kinase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70022401-4	chr14	70021907	70022907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 4 of 6)	intron (NM_028560, intron 4 of 6)	-55038.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91679206-4	chr6	91678715	91679715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4852.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-21022593-4	chr2	21022068	21023068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53694.0	NR_033225	433408.0	Mm.386941	NR_033225		Gm13375	-	predicted gene 13375	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69372537-4	chr12	69372068	69373068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007481, exon 2 of 2)	5' UTR (NM_007481, exon 2 of 2)	418.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	16.0	82.5	66.0	26.5	60.0	63.0
Merged-chr17-70830313-2	chr17	70829813	70830813	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	16464.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132033465-2	chr4	132032965	132033965	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	B2_Mm2|SINE|B2	15613.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-101783460-4	chr2	101782949	101783949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	14258.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	50.5	84.5	95.0	60.0	79.5	92.5
Merged-chr4-9649576-4	chr4	9649089	9650089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	-5872.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	61.5	143.5	88.0	97.5	166.5	94.0
Merged-chr3-88179156-2	chr3	88178656	88179656	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1371.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	0.0	3.5	0.5	0.0	9.0	1.0
Merged-chr7-82648526-4	chr7	82648019	82649019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177894)	promoter-TSS (NM_177894)	9.0	NM_177894	330577.0	Mm.222812	NM_177894	ENSMUSG00000038570	Saxo2	1700129I04Rik|D030069K18|Fam154b	stabilizer of axonemal microtubules 2	protein-coding	0.0	2.5	0.5	3.0	0.0	0.0
Merged-chr9-40834870-4	chr9	40834379	40835379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33606.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	3.0	28.0	11.0	5.5	16.0	25.0
Merged-chr11-52098668-4	chr11	52098172	52099172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019411)	promoter-TSS (NM_019411)	-152.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118169977-2	chr7	118169477	118170477	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001031814, intron 31 of 62)	RLTR13B1|LTR|ERVK	-40352.0	NM_019419	54208.0	Mm.29924	NM_019419	ENSMUSG00000030654	Arl6ip1	AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding	13.5	37.5	44.0	24.5	58.5	28.5
Merged-chr2-60903699-4	chr2	60903191	60904191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-22253.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135609262-2	chr3	135608762	135609762	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 12 of 24)	intron (NM_008689, intron 12 of 24)	82285.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	1.0	2.0	1.0	2.5	2.0	2.5
Merged-chr18-53176292-4	chr18	53175785	53176785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026386)	promoter-TSS (NM_026386)	-7.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65974848-4	chr3	65974332	65975332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-16583.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	44.5	108.0	98.0	63.0	119.0	114.5
Merged-chr4-133087869-2	chr4	133087369	133088369	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42764.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	8.0	18.0	12.5	4.5	3.5	1.0
Merged-chr7-44848697-1	chr7	44848197	44849197	+	1000.0	f0_c57.idr	promoter-TSS (NM_001290695)	promoter-TSS (NM_001290695)	382.0	NM_001042655	233204.0	Mm.27567	NM_144924	ENSMUSG00000038520	Tbc1d17	BC017607	TBC1 domain family, member 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-121171117-4	chr2	121170564	121171564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290819)	promoter-TSS (NM_001290819)	61.0	NM_001290819	99334.0	Mm.188422	NM_178889	ENSMUSG00000050619	Zscan29	AW125441|Zfp690	zinc finger SCAN domains 29	protein-coding	56.0	117.0	100.5	44.0	115.0	69.0
Merged-chr10-25331558-2	chr10	25331045	25332045	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28253.0	NM_001358754	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	37.5	107.5	60.5	21.5	65.0	52.5
Merged-chr1-91051669-4	chr1	91051185	91052185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-1759.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43880402-3	chr5	43879906	43880906	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	L1MC5a|LINE|L1	11597.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	33.0	79.0	42.5	33.5	79.5	40.5
Merged-chr10-40077798-4	chr10	40077303	40078303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 2 of 5)	intron (NM_001114332, intron 2 of 5)	-52535.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23533783-4	chr13	23533270	23534270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175661)	promoter-TSS (NM_175661)	-141.0	NM_175661	319173.0	Mm.377878	NM_175661	ENSMUSG00000061991	Hist1h2af	H2a-221	histone cluster 1, H2af	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25833483-4	chr17	25832940	25833940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019719)	promoter-TSS (NM_019719)	-79.0	NM_019719	56424.0	Mm.277599	NM_019719	ENSMUSG00000039615	Stub1	0610033N24Rik|2210017D18Rik|2310040B03Rik|AW046544|Chip	STIP1 homology and U-Box containing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-85914598-1	chr5	85914098	85915098	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	150985.0	NM_001345902	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	1.0	3.0	3.5	9.5	10.5	8.0
Merged-chr2-125123638-4	chr2	125123146	125124146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162417)	promoter-TSS (NM_001162417)	14.0	NM_001162417	17876.0	Mm.18535	NM_010852	ENSMUSG00000027201	Myef2	9430071B01|mKIAA1341	myelin basic protein expression factor 2, repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25485755-4	chr14	25485254	25486254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	26569.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141048434-4	chr7	141047932	141048932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12842.0	NM_177897	330671.0	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37845801-4	chr13	37845303	37846303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	18410.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-117051998-2	chr13	117051498	117052498	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-26482.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0.0	4.0	0.5	0.0	4.0	0.5
Merged-chr13-49191864-4	chr13	49191330	49192330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013610, intron 1 of 3)	intron (NM_013610, intron 1 of 3)	4283.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70611397-4	chr8	70610912	70611912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3098.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	40.5	82.5	68.0	43.0	79.5	36.0
Merged-chr16-90279234-4	chr16	90278729	90279729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346799, intron 1 of 19)	intron (NM_001346799, intron 1 of 19)	5257.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41001083-4	chr13	41000582	41001582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155347)	promoter-TSS (NR_155347)	64.0	NR_155347	102633880.0	Mm.314757	NR_155347		A730081D07Rik	-	RIKEN cDNA A730081D07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103785323-4	chr14	103784864	103785864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58337.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73384812-3	chr14	73384333	73385333	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008410, intron 1 of 5)	CpG	456.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146642525-4	chr6	146642037	146643037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025315)	promoter-TSS (NM_025315)	-42.0	NM_025315	108098.0	Mm.26212	NM_025315	ENSMUSG00000030291	Med21	0610007L03Rik|AI449604|D19234|D6Ertd782e|Srb7|Surb7	mediator complex subunit 21	protein-coding	69.0	174.5	138.5	74.5	176.5	132.0
Merged-chr17-32528925-4	chr17	32528439	32529439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001101445)	TTS (NM_001101445)	-7618.0	NM_001356302	70101.0	Mm.30504	NM_024442	ENSMUSG00000048440	Cyp4f16	2310021J05Rik|AI746515	cytochrome P450, family 4, subfamily f, polypeptide 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148536810-4	chr2	148536303	148537303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93268.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	3.0	1.5	17.0	14.5	3.5	12.0
Merged-chr10-122747693-4	chr10	122747182	122748182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	68367.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	11.0	41.5	21.5	2.5	25.5	20.0
Merged-chr10-80999995-4	chr10	80999472	81000472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010319, intron 1 of 3)	intron (NM_010319, intron 1 of 3)	1393.0	NM_001038655	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50596933-4	chr6	50596422	50597422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027564)	promoter-TSS (NM_027564)	-332.0	NM_027564	70821.0	Mm.157323	NM_027564	ENSMUSG00000029828	4921507P07Rik	TISP74	RIKEN cDNA 4921507P07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124479065-2	chr6	124478565	124479565	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14048.0	NM_181344	232371.0	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113698069-4	chr6	113697476	113698476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033463, exon 2 of 8)	exon (NM_001033463, exon 2 of 8)	926.0	NM_001033463	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21423156-4	chr16	21422656	21423656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285894)	promoter-TSS (NM_001285894)	38.0	NM_001285894	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54846630-4	chr18	54846122	54847122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143558.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88315089-1	chr7	88314589	88315589	+	1000.0	f0_balb.idr	3' UTR (NM_009982, exon 7 of 7)	3' UTR (NM_009982, exon 7 of 7)	37004.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	14.0	30.0	31.0	13.5	32.0	24.5
Merged-chr4-83315525-4	chr4	83314984	83315984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 1 of 19)	intron (NM_027238, intron 1 of 19)	8705.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82871251-4	chr11	82870738	82871738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164571)	promoter-TSS (NM_001164571)	-28.0	NM_001164571	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89297454-4	chr6	89296933	89297933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11708.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75644921-4	chr11	75644429	75645429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008916, intron 7 of 11)	MIRc|SINE|MIR	-6580.0	NM_008659	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80139067-4	chr17	80138618	80139618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176963, intron 2 of 6)	intron (NM_176963, intron 2 of 6)	11647.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126649503-4	chr7	126648969	126649969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_029339, exon 1 of 10)	5' UTR (NM_029339, exon 1 of 10)	160.0	NM_029339	75565.0	Mm.45686	NM_029339	ENSMUSG00000030714	Sgf29	1700023O11Rik|9530025I05Rik|Ccdc101	SAGA complex associated factor 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89246420-4	chr3	89245904	89246904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025327)	promoter-TSS (NM_025327)	-34.0	NM_025327	66059.0	Mm.177991	NM_025327	ENSMUSG00000042747	Krtcap2	0610010I12Rik|Kcp2	keratinocyte associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39379469-4	chr6	39378955	39379955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1748.0	NR_155077	72144.0	Mm.482167	NM_028123	ENSMUSG00000029924	Slc37a3	2610507O21Rik|AU044904	solute carrier family 37 (glycerol-3-phosphate transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102456237-1	chr12	102455737	102456737	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-12897.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	145.0	471.0	354.5	151.0	495.0	313.5
Merged-chr3-60503419-2	chr3	60502919	60503919	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	2240.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	3.0	13.0	7.5	5.5	6.5	12.5
Merged-chr4-142074299-4	chr4	142073847	142074847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	G-rich|Low_complexity|Low_complexity	-9951.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-8674344-4	chr16	8673856	8674856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2203.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11045181-4	chr19	11044684	11045684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5382.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114356651-4	chr7	114356139	114357139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_029438, intron 3 of 4)	intron (NR_029438, intron 3 of 4)	58522.0	NR_029437	71045.0	Mm.235682	NR_029437	ENSMUSG00000087475	4933406I18Rik	4933403D24Rik	RIKEN cDNA 4933406I18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24919630-4	chr2	24919121	24920121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172545)	promoter-TSS (NM_172545)	-12.0	NM_001109686	77683.0	Mm.24176	NM_172545	ENSMUSG00000036893	Ehmt1	9230102N17Rik|D330003E03|Eu-HMTase1|GLP|GLP1|KMT1D|mKIAA1876	euchromatic histone methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33843201-4	chr17	33842704	33843704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305169)	promoter-TSS (NM_001305169)	113.0	NM_019421	54219.0	Mm.11175	NM_019421	ENSMUSG00000002308	Cd320	425O18-1|8D6|D17Ertd716e|NG29|TCblR|VLDL	CD320 antigen	protein-coding	5.5	9.0	1.0	3.0	1.0	0.0
Merged-chr14-70289488-4	chr14	70288986	70289986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008915)	promoter-TSS (NM_008915)	11.0	NM_001360229	19057.0	Mm.439683	NM_008915	ENSMUSG00000022092	Ppp3cc	Calnc|PP2BA gamma	protein phosphatase 3, catalytic subunit, gamma isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94526584-4	chr16	94526078	94527078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007834)	promoter-TSS (NM_007834)	51.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3873028-4	chr12	3872520	3873520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 5 of 22)	intron (NM_007872, intron 5 of 22)	-10776.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-24005610-4	chr1	24005100	24006100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026503)	promoter-TSS (NM_026503)	40.0	NM_026503	68002.0	Mm.250424	NM_026503	ENSMUSG00000026154	Sdhaf4	1110058L19Rik|1700001E18Rik|C6orf57	succinate dehydrogenase complex assembly factor 4	protein-coding	11.0	25.5	60.0	35.0	30.0	43.5
Merged-chr16-23265987-2	chr16	23265487	23266487	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-24483.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-103425935-4	chr12	103425435	103426435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020494)	promoter-TSS (NM_020494)	-68.0	NM_020494	27225.0	Mm.3935	NM_020494	ENSMUSG00000041645	Ddx24	1700055J08Rik|2510027P10Rik|AI649272	DEAD (Asp-Glu-Ala-Asp) box polypeptide 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124830091-4	chr6	124829587	124830587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001326594)	promoter-TSS (NM_001326594)	-89.0	NM_013538	14793.0	Mm.285723	NM_013538	ENSMUSG00000023505	Cdca3	2410005A12Rik|C8|Grcc8|Tome-1	cell division cycle associated 3	protein-coding	6.5	12.5	6.5	9.0	26.0	8.0
Merged-chr4-128660344-4	chr4	128659864	128660864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	5662.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181273948-4	chr2	181273396	181274396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198169, intron 2 of 9)	MTA_Mm|LTR|ERVL-MaLR	14070.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98926445-4	chr13	98925925	98926925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178716)	promoter-TSS (NM_178716)	-41.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67343133-4	chr17	67342649	67343649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	11310.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	50.5	88.5	47.0	21.0	26.0	20.0
Merged-chr8-126596418-4	chr8	126595919	126596919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2983.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	2.5	4.5	4.5	8.5	2.5	14.5
Merged-chr2-173538199-4	chr2	173537721	173538721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15629.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	14.5	14.0	18.0	13.0	15.0	11.0
Merged-chr4-132422142-4	chr4	132421677	132422677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161797, intron 1 of 12)	CpG	269.0	NM_001161797	100169.0	Mm.158361	NM_175306	ENSMUSG00000066043	Phactr4	3110001B12Rik|AI527228|AW495572|C330013F19Rik|N28169|mKIAA4120	phosphatase and actin regulator 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91590995-4	chr12	91590503	91591503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175335)	promoter-TSS (NM_175335)	-516.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96633787-4	chr15	96633305	96634305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166458, intron 1 of 15)	MTD|LTR|ERVL-MaLR	8157.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31210537-2	chr6	31210037	31211037	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	B3|SINE|B2	7937.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52268797-1	chr3	52268297	52269297	+	1000.0	f0_c57.idr	5' UTR (NM_019739, exon 1 of 3)	5' UTR (NM_019739, exon 1 of 3)	460.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56613439-4	chr17	56612971	56613971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018730)	promoter-TSS (NM_018730)	76.0	NM_018730	54217.0	Mm.11376	NM_018730	ENSMUSG00000057863	Rpl36	-	ribosomal protein L36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36572364-3	chr1	36571869	36572869	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-13988.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26445426-4	chr2	26444904	26445904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153125)	promoter-TSS (NM_153125)	-188.0	NM_153125	227648.0	Mm.206371	NM_153125	ENSMUSG00000026924	Sec16a	AU024582|C230052J16Rik	SEC16 homolog A, endoplasmic reticulum export factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58475036-4	chr16	58474530	58475530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 7 of 10)	intron (NM_001357433, intron 7 of 10)	48396.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134539636-4	chr6	134539096	134540096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 2 of 22)	intron (NM_008514, intron 2 of 22)	27317.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	98.5	247.5	232.5	47.0	214.0	159.0
Merged-chr5-134552398-4	chr5	134551907	134552907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009990)	promoter-TSS (NM_009990)	27.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86948969-3	chr4	86948469	86949469	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	74555.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	1.0	0.0	0.0	1.5	3.5	1.5
Merged-chr4-149989232-4	chr4	149988738	149989738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291004, intron 3 of 4)	intron (NM_001291004, intron 3 of 4)	13998.0	NM_001291004	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	8.5	15.5	13.0	8.5	10.5	5.5
Merged-chr2-103485173-4	chr2	103484655	103485655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009804)	promoter-TSS (NM_009804)	-2.0	NM_009804	12359.0	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	25.5	68.5	43.0	23.5	66.5	45.5
Merged-chr9-120118391-4	chr9	120117897	120118897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144793, intron 3 of 6)	Tigger7|DNA|TcMar-Tigger	7998.0	NM_144793	208638.0	Mm.236656	NM_144793	ENSMUSG00000032519	Slc25a38	AV019094|BC010801|appoptosin	solute carrier family 25, member 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91074806-4	chr1	91074295	91075295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 3 of 22)	intron (NM_008515, intron 3 of 22)	21351.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139793626-4	chr5	139793129	139794129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010757, intron 1 of 2)	intron (NM_010757, intron 1 of 2)	2093.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172334870-4	chr1	172334359	172335359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5537.0	NM_001360808	16524.0	Mm.261168	NM_008429	ENSMUSG00000038026	Kcnj9	1700085N21Rik|Girk3|Kir3.3|mbGIRK3	potassium inwardly-rectifying channel, subfamily J, member 9	protein-coding	27.5	119.5	94.0	90.0	192.0	158.0
Merged-chr6-127236715-4	chr6	127236171	127237171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71296.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-146174029-2	chr4	146173529	146174529	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177545, intron 2 of 4)	RMER17B2|LTR|ERVK	16339.0	NM_001177545	667666.0	Mm.459230	NM_001177545	ENSMUSG00000066007	Zfp600	Gm13164	zinc finger protein 600	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138658221-1	chr5	138657721	138658721	+	1000.0	f1_balb.idr	Intergenic	Intergenic	35362.0	NM_183025	243308.0	Mm.36612	NM_183025	ENSMUSG00000056014	A430033K04Rik	C86988	RIKEN cDNA A430033K04 gene	protein-coding	8.5	10.0	4.0	4.0	4.5	1.0
Merged-chr4-150545010-4	chr4	150544487	150545487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	107187.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	40.0	113.0	58.0	11.0	80.5	54.0
Merged-chr9-61368560-4	chr9	61368070	61369070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3796.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55053229-4	chr1	55052738	55053738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026424, intron 1 of 3)	CpG	468.0	NM_001039710	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	74.5	174.5	140.5	89.5	177.0	114.0
Merged-chr18-80555227-2	chr18	80554727	80555727	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10681.0	NR_028424	100039348.0	Mm.254722	NR_028424		Gm2176	A430076E10Rik	glucosamine-6-phosphate deaminase 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69662312-1	chr11	69661812	69662812	+	1000.0	f0_c57.idr	promoter-TSS (NR_035455)	promoter-TSS (NR_035455)	337.0	NR_125917	24070.0	Mm.89579	NM_011900	ENSMUSG00000018761	Mpdu1	LEC35|SL15|Supl15h	mannose-P-dolichol utilization defect 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-70201744-4	chr10	70201214	70202214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2950.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71327961-4	chr2	71327487	71328487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 4 of 17)	intron (NM_172436, intron 4 of 17)	39567.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94634250-4	chr8	94633746	94634746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359093, intron 6 of 14)	intron (NM_001359093, intron 6 of 14)	32305.0	NM_026274	67610.0	Mm.109074	NM_026274	ENSMUSG00000050079	Rspry1	4930470D19Rik|AI608258	ring finger and SPRY domain containing 1	protein-coding	5.5	0.0	2.0	0.0	7.5	2.5
Merged-chr16-93607869-4	chr16	93607385	93608385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007620)	promoter-TSS (NM_007620)	48.0	NM_007620	12408.0	Mm.26940	NM_007620	ENSMUSG00000051483	Cbr1	AW261796|CR|Cbr	carbonyl reductase 1	protein-coding	7.5	40.0	50.5	3.5	19.5	13.0
Merged-chr11-26639675-4	chr11	26639187	26640187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-45767.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	4.0	31.0	27.0	4.0	31.0	26.0
Merged-chr17-5402862-4	chr17	5402346	5403346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15921.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166744658-4	chr2	166744161	166745161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30829.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139024659-4	chr5	139024158	139025158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359099, intron 9 of 10)	intron (NM_001359099, intron 9 of 10)	-29705.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47275841-4	chr17	47275360	47276360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 4 of 19)	intron (NM_001097623, intron 4 of 19)	45630.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	34.0	73.0	39.5	25.5	43.0	23.0
Merged-chr4-80311302-4	chr4	80310799	80311799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-522914.0	NM_031202	22178.0	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding	16.0	13.5	23.0	16.5	14.5	13.0
Merged-chr7-45526296-4	chr7	45525798	45526798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148927)	promoter-TSS (NM_148927)	-30.0	NM_008654	17872.0	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141458911-2	chr7	141458411	141459411	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163689, exon 7 of 9)	exon (NM_001163689, exon 7 of 9)	-2183.0	NM_001025103	213573.0	Mm.386851	NM_001025103	ENSMUSG00000048200	Cracr2b	6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a	calcium release activated channel regulator 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20611589-4	chr16	20611062	20612062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177940)	promoter-TSS (NM_177940)	-39.0	NM_177940	110599584.0	Mm.263319	NM_177940		Eef1akmt4-ece2	Eef1akmt4	Eef1akmt4-Ece2 readthrough	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-36932814-4	chr19	36932318	36933318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080706, intron 1 of 37)	intron (NM_001080706, intron 1 of 37)	6739.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90034108-4	chr7	90033592	90034592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 1 of 5)	intron (NR_110365, intron 1 of 5)	4933.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	77.0	100.5	104.0	64.5	109.5	67.5
Merged-chr4-117928962-2	chr4	117928464	117929464	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001284193, intron 2 of 4)	intron (NM_001284193, intron 2 of 4)	799.0	NM_001284191	11876.0	Mm.56897	NM_009711	ENSMUSG00000028539	Artn	neublastin	artemin	protein-coding	0.0	8.0	0.0	0.0	2.5	0.0
Merged-chr1-93635136-6	chr1	93634607	93635607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021537, intron 2 of 11)	CpG	620.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12955793-4	chr18	12955328	12956328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13987.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78891227-4	chr17	78890740	78891740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163625, intron 4 of 6)	MTE2a|LTR|ERVL-MaLR	-8668.0	NM_011163	19106.0	Mm.378990	NM_011163	ENSMUSG00000024079	Eif2ak2	2310047A08Rik|4732414G15Rik|AI467567|AI747578|Pkr|Prkr|Tik	eukaryotic translation initiation factor 2-alpha kinase 2	protein-coding	54.5	51.5	77.5	20.5	54.5	22.0
Merged-chr19-41774617-1	chr19	41774117	41775117	+	1000.0	f0_c57.idr	intron (NM_027667, intron 9 of 11)	intron (NM_027667, intron 9 of 11)	27467.0	NM_001163495	71085.0	Mm.21646	NM_027667	ENSMUSG00000025154	Arhgap19	4933411B03Rik|AI120128|AW546831|mFLJ00368	Rho GTPase activating protein 19	protein-coding	193.0	464.0	348.5	124.5	257.0	193.5
Merged-chr6-59209439-4	chr6	59208957	59209957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081145, exon 2 of 2)	5' UTR (NM_001081145, exon 2 of 2)	587.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-100143947-4	chr6	100143458	100144458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143400.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100104043-4	chr13	100103517	100104517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081061)	promoter-TSS (NM_001081061)	53.0	NM_001081061	544971.0	Mm.288546	NM_001081061	ENSMUSG00000049658	Bdp1	AI662220|AW049390|AW456745|B130055N23Rik|G630013P12Rik|TAF3B1|TFC5|TFIIIB150|TFIIIB90|Tfnr|mKIAA1241	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65676519-4	chr9	65676035	65677035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010952)	promoter-TSS (NM_010952)	-13.0	NM_010952	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	20.5	36.5	24.0	19.0	35.0	13.5
Merged-chr4-141271835-4	chr4	141271355	141272355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6584.0	NR_151527	100503810.0		NR_151527	ENSMUSG00000085395	Gm13056	-	predicted gene 13056	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43171535-4	chr13	43171081	43172081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025935)	promoter-TSS (NM_025935)	-80.0	NM_001252640	67046.0	Mm.269213	NM_025935	ENSMUSG00000021368	Tbc1d7	2610009C09Rik	TBC1 domain family, member 7	protein-coding	24.0	42.0	54.0	28.5	52.5	48.0
Merged-chr7-101895288-2	chr7	101894788	101895788	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291352, intron 1 of 5)	B4A|SINE|B4	-1043.0	NM_001291348	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	2.5	8.5	6.5	2.5	8.5	6.5
Merged-chr1-106815482-4	chr1	106815010	106816010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18785.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29908648-4	chr7	29908153	29909153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243908, intron 1 of 4)	intron (NM_001243908, intron 1 of 4)	136.0	NM_001243908	73729.0	Mm.333743	NM_001243908	ENSMUSG00000099689	Zfp383	1110003H10Rik	zinc finger protein 383	protein-coding	108.5	248.0	178.0	115.5	255.5	169.5
Merged-chr15-99972781-4	chr15	99972245	99973245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284523)	promoter-TSS (NM_001284523)	-35.0	NM_001024526	207214.0	Mm.28811	NM_001024526	ENSMUSG00000023025	Larp4	DXErtd793|DXErtd793e	La ribonucleoprotein domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36552152-2	chr1	36551652	36552652	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304329, intron 10 of 14)	intron (NM_001304329, intron 10 of 14)	-4900.0	NR_132321	109346.0	Mm.247537	NM_026241	ENSMUSG00000079610	Ankrd39	9130416N05Rik|C030004B10Rik	ankyrin repeat domain 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44435964-4	chr9	44435468	44436468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033469, exon 3 of 5)	exon (NM_001033469, exon 3 of 5)	4900.0	NM_001033469	382074.0	Mm.335103	NM_001033469	ENSMUSG00000074397	Foxr1	Foxn5|Gm1115	forkhead box R1	protein-coding	0.0	9.5	4.0	1.0	0.0	11.0
Merged-chr4-3723005-4	chr4	3722506	3723506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	8042.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	41.0	164.5	100.5	60.0	139.5	103.5
Merged-chr8-53511780-4	chr8	53511296	53512296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205054)	promoter-TSS (NM_001205054)	94.0	NM_001005847	11593.0	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5210374-2	chr17	5209874	5210874	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	208393.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-145924123-4	chr3	145923634	145924634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009740)	promoter-TSS (NM_009740)	-128.0	NM_009740	12042.0	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53412167-4	chr4	53411654	53412654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28259.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-72838249-4	chr2	72837735	72838735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24518.0	NR_102349	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87327392-3	chr1	87326891	87327891	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146112, intron 1 of 28)	CpG	393.0	NM_001110212	227331.0	Mm.23065	NM_146112	ENSMUSG00000048000	Gigyf2	2610016F01Rik|A830080H02Rik|AI852361|AW259676|BC006835|Tnrc15|mKIAA0642	GRB10 interacting GYF protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-10876520-4	chr15	10876043	10877043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	47492.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-26449656-4	chr12	26449164	26450164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021384, intron 3 of 5)	intron (NM_021384, intron 3 of 5)	6788.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	13.5	48.5	28.5	30.0	90.5	40.0
Merged-chr10-22301768-4	chr10	22301262	22302262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	ORR1C1|LTR|ERVL-MaLR	-4958.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	33.5	109.5	66.0	38.5	126.5	80.0
Merged-chr7-46830920-4	chr7	46830427	46831427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14877.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113643677-4	chr5	113643166	113644166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359060)	promoter-TSS (NM_001359060)	-63.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-61999787-4	chr15	61999281	62000281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14440.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-52060535-4	chr16	52060020	52061020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	28971.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122147593-4	chr2	122147101	122148101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009735)	promoter-TSS (NM_009735)	-86.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	174.5	558.5	340.5	157.5	447.5	318.0
Merged-chr11-54100964-4	chr11	54100476	54101476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011031)	promoter-TSS (NM_011031)	52.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-178336603-4	chr1	178336080	178337080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149827, intron 1 of 16)	CpG	1235.0	NM_016805	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4166320-4	chr8	4165772	4166772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039578)	promoter-TSS (NM_001039578)	-295.0	NM_001039578	213027.0	Mm.437106	NM_153536	ENSMUSG00000011832	Evi5l	1700084G18Rik|2310039H16Rik|3110007G05Rik|B130050I23Rik	ecotropic viral integration site 5 like	protein-coding	0.0	4.5	5.0	0.0	4.5	5.0
Merged-chr1-36272314-3	chr1	36271831	36272831	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153408, intron 1 of 3)	intron (NM_153408, intron 1 of 3)	1094.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-41743714-4	chr3	41743208	41744208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291048, intron 1 of 4)	intron (NM_001291048, intron 1 of 4)	1090.0	NM_027271	73852.0	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	63.0	102.0	68.0	31.0	89.5	58.0
Merged-chr9-96478678-4	chr9	96478172	96479172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011279)	promoter-TSS (NM_011279)	3.0	NM_011279	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60892466-4	chr13	60891981	60892981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	4966.0	NM_007797	13025.0	Mm.30144	NM_007797	ENSMUSG00000074874	Ctla2b	AW545568|Ctla-2b	cytotoxic T lymphocyte-associated protein 2 beta	protein-coding	21.5	91.5	59.5	21.0	91.0	58.5
Merged-chr18-35662238-4	chr18	35661724	35662724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027733)	promoter-TSS (NM_027733)	-38.0	NM_029485	71242.0	Mm.151498	NM_027733	ENSMUSG00000024352	Spata24	2700012K08Rik|4930583E11Rik|5133400G04Rik|AU016220|TIPT|TIPT2	spermatogenesis associated 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11439489-4	chr2	11438980	11439980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-40980.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28809140-4	chr7	28808662	28809662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1728.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102672137-3	chr2	102671630	102672630	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077514, intron 1 of 10)	MTC|LTR|ERVL-MaLR	13441.0	NM_001361018	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	3.5	9.0	2.5	46.0	37.5	35.5
Merged-chr7-51861797-4	chr7	51861301	51862301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330608)	promoter-TSS (NM_001330608)	-214.0	NM_001330608	14453.0	Mm.207360	NM_008087	ENSMUSG00000030498	Gas2	Gas-2	growth arrest specific 2	protein-coding	6.0	31.0	38.0	4.0	41.0	40.5
Merged-chr3-15426401-3	chr3	15425841	15426841	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001002898)	promoter-TSS (NM_001002898)	86.0	NM_001002898	320832.0	Mm.330924	NM_178792	ENSMUSG00000095788	Sirpb1a	9930027N05Rik|SIRP-beta|Sirpb|Sirpb1	signal-regulatory protein beta 1A	protein-coding	7.0	4.0	4.5	9.0	16.0	7.0
Merged-chr3-157925179-4	chr3	157924690	157925690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145953)	promoter-TSS (NM_145953)	-127.0	NM_145953	107869.0	Mm.28301	NM_145953	ENSMUSG00000028179	Cth	0610010I13Rik|AI314617|BC019483|CSE|Cys3	cystathionase (cystathionine gamma-lyase)	protein-coding	0.0	0.0	5.0	0.0	0.0	0.0
Merged-chr4-120825277-4	chr4	120824782	120825782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357194)	promoter-TSS (NM_001357194)	-73.0	NM_001357194	18046.0	Mm.318389	NM_008692	ENSMUSG00000032897	Nfyc	-	nuclear transcription factor-Y gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4409276-4	chr19	4408786	4409786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-12209.0	NM_001001984	225876.0	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95612197-4	chr16	95611688	95612688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25595.0	NM_001302152	13876.0	Mm.164531	NM_133659	ENSMUSG00000040732	Erg	D030036I24Rik	ETS transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35048602-2	chr12	35048102	35049102	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	1413.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	73.0	157.0	107.0	38.5	144.0	75.0
Merged-chr16-50530297-4	chr16	50529804	50530804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040379, intron 1 of 5)	intron (NR_040379, intron 1 of 5)	1802.0	NR_040379	619312.0	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71669698-4	chr17	71669203	71670203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3558.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75531046-2	chr11	75530546	75531546	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173388)	promoter-TSS (NM_173388)	-648.0	NM_001199284	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148818658-2	chr4	148818158	148819158	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027195, intron 1 of 15)	intron (NM_027195, intron 1 of 15)	14266.0	NM_027195	69743.0	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	6.0	0.0	2.0	2.0	1.5	1.5
Merged-chr13-97584355-4	chr13	97583859	97584859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_046157)	TTS (NR_046157)	24359.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21165219-4	chr9	21164723	21165723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183408)	promoter-TSS (NM_183408)	-491.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-110568194-2	chr13	110567694	110568694	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	173150.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-78488785-4	chr1	78488294	78489294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_102757, exon 1 of 17)	non-coding (NR_102757, exon 1 of 17)	103.0	NR_102758	23874.0	Mm.17898	NM_011811	ENSMUSG00000026245	Farsb	C76708|Farsa|Farsl|Farslb|Frsb	phenylalanyl-tRNA synthetase, beta subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108290370-4	chr9	108289861	108290861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025449)	promoter-TSS (NM_025449)	-96.0	NM_025449	66257.0	Mm.10407	NM_025449	ENSMUSG00000032606	Nicn1	1500032A17Rik	nicolin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76027339-2	chr11	76026839	76027839	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029658, intron 1 of 2)	CpG	443.0	NM_029658	76566.0	Mm.34131	NM_029658	ENSMUSG00000020846	Rflnb	1500005K14Rik|Fam101b|RefilinB|cfm	refilin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17646446-4	chr16	17645938	17646938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166164)	promoter-TSS (NM_001166164)	-32.0	NM_001166164	72315.0	Mm.297777	NM_001166164	ENSMUSG00000041617	Ccdc74a	2310015A05Rik	coiled-coil domain containing 74A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95349708-2	chr3	95349208	95350208	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163641, intron 4 of 21)	B3A|SINE|B2	7494.0	NM_001163641	84505.0	Mm.490259	NM_018877	ENSMUSG00000015697	Setdb1	AU022152|ESET|KMT1E|mKIAA0067	SET domain, bifurcated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134079190-4	chr1	134078707	134079707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007570)	promoter-TSS (NM_007570)	-52.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133353598-4	chr4	133353083	133354083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14268.0	NM_199306	230796.0	Mm.226576	NM_199306	ENSMUSG00000037622	Wdtc1	Gm695|adipose|adp	WD and tetratricopeptide repeats 1	protein-coding	13.0	26.5	12.5	6.0	30.5	19.0
Merged-chr17-25785416-4	chr17	25784923	25785923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026897)	promoter-TSS (NM_026897)	-85.0	NM_026897	68977.0	Mm.29230	NM_026897	ENSMUSG00000061046	Haghl	1500017E18Rik|2810014I23Rik|C330022E15Rik	hydroxyacylglutathione hydrolase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27405173-7	chr2	27404652	27405652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	22456.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-52396694-7	chr11	52396260	52397260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153117, intron 1 of 2)	CpG	332.0	NM_153117	213673.0	Mm.291979	NM_153117	ENSMUSG00000036275	9530068E07Rik	C85061|Kct2	RIKEN cDNA 9530068E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34716650-4	chr1	34716154	34717154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80444.0	NR_033627	241051.0	Mm.282827	NR_033627		AA619741	-	PHD finger protein 19 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96185855-4	chr10	96185346	96186346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40361.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122739302-4	chr10	122738808	122739808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	59993.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	4.0	11.0	16.0	4.0	9.5	16.0
Merged-chr8-46794131-2	chr8	46793631	46794631	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 2 of 7)	intron (NR_152560, intron 2 of 7)	54386.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-99194148-4	chr4	99193620	99194620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145967)	promoter-TSS (NM_001145967)	-27.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	206.5	423.0	393.5	211.5	432.0	410.0
Merged-chr18-67449327-4	chr18	67448825	67449825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027130)	promoter-TSS (NM_027130)	-189.0	NM_027130	69597.0	Mm.426052	NM_027130	ENSMUSG00000024527	Afg3l2	2310036I02Rik|AW260507|Emv66|par	AFG3-like AAA ATPase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-77013372-4	chr5	77012878	77013878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_077218, intron 2 of 3)	intron (NR_077218, intron 2 of 3)	-2645.0	NM_027970	71868.0	Mm.151092	NM_027970	ENSMUSG00000029248	Thegl	1700023E05Rik	theg spermatid protein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139465104-4	chr5	139464598	139465598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4564.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70542744-4	chr9	70542227	70543227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025690)	promoter-TSS (NM_025690)	12.0	NM_025690	66660.0	Mm.22379	NM_025690	ENSMUSG00000032212	Sltm	5730455C01Rik|5730555F13Rik|9130215G10Rik|Met	SAFB-like, transcription modulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62227773-4	chr18	62227298	62228298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47698.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	10.0	10.5	7.0	8.0	13.5	4.0
Merged-chr1-80340924-4	chr1	80340442	80341442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313728)	promoter-TSS (NM_001313728)	-252.0	NM_016716	26554.0	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46043576-2	chr19	46043076	46044076	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113408, intron 1 of 10)	intron (NM_001113408, intron 1 of 10)	1735.0	NM_001113408	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	1.5	1.5	0.0	1.5	1.5	0.0
Merged-chr15-61985280-7	chr15	61984798	61985798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010849)	promoter-TSS (NM_010849)	-43.0	NM_001177354	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126595644-4	chr8	126595104	126596104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2168.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	30.0	119.0	43.5	33.0	93.0	39.5
Merged-chr17-88113388-6	chr17	88112872	88113872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-12140.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73423903-4	chr15	73423401	73424401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358045)	promoter-TSS (NM_001358045)	-710.0	NM_001358045	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117960192-4	chr11	117959685	117960685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9181.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98360670-1	chr7	98360170	98361170	+	1000.0	f1_balb.idr	intron (NM_001168540, intron 1 of 2)	intron (NM_001168540, intron 1 of 2)	618.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	15.5	63.5	44.5	16.0	44.0	41.5
Merged-chr5-95898162-4	chr5	95897643	95898643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58796.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65397397-4	chr3	65396892	65397892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4839.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	8.5	4.0	11.0	18.5	13.0	10.0
Merged-chr19-43511271-3	chr19	43510757	43511757	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010324, intron 2 of 8)	intron (NM_010324, intron 2 of 8)	13348.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	151.5	288.5	238.5	99.5	334.0	261.0
Merged-chr6-29164746-4	chr6	29164254	29165254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133925)	promoter-TSS (NM_133925)	-30.0	NM_133925	68272.0	Mm.40802	NM_026650	ENSMUSG00000029701	Rbm28	2810480G15Rik|AI503051	RNA binding motif protein 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79253295-3	chr3	79252818	79253818	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045502, intron 2 of 2)	intron (NR_045502, intron 2 of 2)	40399.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	35.0	91.0	40.0	1.0	25.0	15.0
Merged-chr10-115328781-4	chr10	115328291	115329291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER70B|LTR|ERVL	-13200.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55033416-4	chr11	55032885	55033885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110211)	promoter-TSS (NM_001110211)	86.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154658735-2	chr2	154658235	154659235	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029362, intron 1 of 4)	B1_Mur3|SINE|Alu	1709.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57812579-4	chr6	57812093	57813093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 1 of 4)	L2a|LINE|L2	12532.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-140766544-4	chr6	140766029	140767029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	139644.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84118398-4	chr17	84117884	84118884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39724.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-91082153-4	chr8	91081688	91082688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282000, intron 4 of 20)	intron (NM_001282000, intron 4 of 20)	12131.0	NM_001282000	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	39.0	108.0	67.5	108.5	224.0	156.5
Merged-chr14-64186018-4	chr14	64185531	64186531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253715, intron 4 of 4)	AmnSINE1|SINE|Deu	81708.0	NM_028525	73382.0	Mm.481055	NM_028525	ENSMUSG00000021966	Prss52	1700049K14Rik|Tesp3	protease, serine 52	protein-coding	11.5	31.5	18.0	22.0	75.0	30.0
Merged-chr5-99411082-2	chr5	99410582	99411582	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	L1_Mur3|LINE|L1	-158155.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90689946-4	chr5	90689449	90690449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49422.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	0.0	3.0	1.0	2.5	4.0	12.0
Merged-chr2-178414477-4	chr2	178414064	178415064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085501)	promoter-TSS (NM_001085501)	30.0	NM_001081289	71532.0	Mm.40216	NM_001081289	ENSMUSG00000070476	Fam217b	9030418K01Rik|AI851938	family with sequence similarity 217, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164917052-4	chr2	164916548	164917548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-5298.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	7.5	27.0	11.0	16.0	21.5	16.5
Merged-chr19-11329648-4	chr19	11329166	11330166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027836, intron 2 of 6)	L1MA4|LINE|L1	5029.0	NM_001276398	109225.0	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75594712-4	chr11	75594211	75595211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008850, intron 2 of 11)	intron (NM_008850, intron 2 of 11)	5520.0	NR_110477	654359.0	Mm.439961	NR_110477		Gm12338	-	cytochrome c oxidase, subunit VIIc pseudogene	pseudo	2.0	12.5	3.5	5.0	8.0	3.5
Merged-chr13-13538774-4	chr13	13538302	13539302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51607.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84579784-2	chr8	84579286	84580286	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252060, intron 25 of 47)	intron (NM_001252060, intron 25 of 47)	83066.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	5.5	6.0	0.0	0.0	4.5	3.5
Merged-chr4-127061139-4	chr4	127060662	127061662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356311)	promoter-TSS (NM_001356311)	-8.0	NM_001356311	68310.0	Mm.273806	NM_026670	ENSMUSG00000043872	Zmym1	5830412B09Rik|AW209050	zinc finger, MYM domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-33666409-1	chr8	33665909	33666909	+	1000.0	f1_c57bl6.idr	intron (NM_010344, intron 1 of 12)	intron (NM_010344, intron 1 of 12)	13171.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	3.5	16.0	8.5	10.0	10.5	1.5
Merged-chr18-4375400-4	chr18	4374753	4375753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361009)	promoter-TSS (NM_001361009)	-339.0	NM_001361008	67440.0	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117384822-2	chr8	117384322	117385322	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 2 of 20)	intron (NM_028941, intron 2 of 20)	35652.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-94543646-4	chr15	94543146	94544146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029926)	promoter-TSS (NM_029926)	-14.0	NM_029926	266632.0	Mm.422858	NM_029926	ENSMUSG00000059883	Irak4	8430405M07Rik|9330209D03Rik|IRAK-4|NY-REN-64	interleukin-1 receptor-associated kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25769166-4	chr14	25768662	25769662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001101433)	promoter-TSS (NM_001101433)	-306.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-24585072-4	chr4	24584575	24585575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149739, intron 17 of 24)	intron (NR_149739, intron 17 of 24)	88624.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	13.5	10.5	3.0	9.5	10.5	3.5
Merged-chr5-36720915-4	chr5	36720407	36721407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-24886.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55691225-4	chr16	55690708	55691708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAGCC)n|Simple_repeat|Simple_repeat	130930.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-113433984-4	chr2	113433485	113434485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010230, intron 3 of 19)	MTD|LTR|ERVL-MaLR	-7079.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-45038810-3	chr16	45038319	45039319	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55192.0	NM_026439	67896.0	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	0.0	18.5	7.5	7.0	15.0	23.0
Merged-chr18-77626133-2	chr18	77625633	77626633	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60997.0	NM_001164504	225743.0	Mm.23293	NM_001164504	ENSMUSG00000025427	Rnf165	2900024M11Rik|AI427432|Akd2|Ark2c|G630064H08Rik|Gm96	ring finger protein 165	protein-coding	0.0	0.0	0.0	0.0	4.0	0.0
Merged-chr8-126667056-4	chr8	126666562	126667562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73626.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116306766-4	chr11	116306251	116307251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016857)	promoter-TSS (NM_016857)	-1.0	NM_001347636	53413.0	Mm.22530	NM_016857	ENSMUSG00000020792	Exoc7	Exo70|sec70	exocyst complex component 7	protein-coding	1.5	17.5	11.0	8.0	9.0	16.0
Merged-chr8-115632378-4	chr8	115631873	115632873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74521.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9879676-4	chr3	9879184	9880184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46005.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	11.5	70.5	57.0	29.0	38.5	19.0
Merged-chr8-117340431-4	chr8	117339944	117340944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-8726.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6779001-4	chr17	6778494	6779494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 1 of 12)	intron (NM_009510, intron 1 of 12)	3786.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8629413-2	chr11	8628913	8629913	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	35122.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64376017-4	chr5	64375508	64376508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR79|LTR|ERVL	91934.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57390471-4	chr16	57389907	57390907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	37130.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106419692-4	chr11	106419217	106420217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 9 of 21)	intron (NM_023913, intron 9 of 21)	-36936.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4082508-2	chr19	4082008	4083008	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160253)	promoter-TSS (NM_001160253)	20.0	NM_001160253	29866.0	Mm.46268	NM_013878	ENSMUSG00000024857	Cabp2	-	calcium binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95415701-2	chr11	95415201	95416201	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359107, intron 1 of 9)	B1_Mur1|SINE|Alu	1618.0	NM_001359107	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13286671-4	chr16	13286159	13287159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122667, intron 2 of 16)	RMER19A|LTR|ERVK	21580.0	NM_181860	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114843051-4	chr6	114842539	114843539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	78782.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180851749-2	chr1	180851249	180852249	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145943, intron 1 of 6)	intron (NM_145943, intron 1 of 6)	598.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90504945-4	chr2	90504448	90505448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-25774.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111237478-4	chr8	111236982	111237982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 1 of 25)	intron (NM_009149, intron 1 of 25)	21720.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6440961-2	chr15	6440461	6441461	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023118)	TTS (NM_023118)	-4372.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72586223-1	chr8	72585723	72586723	+	1000.0	f1_c57bl6.idr	non-coding (NR_151663, exon 3 of 3)	non-coding (NR_151663, exon 3 of 3)	14400.0	NM_001357279	74166.0	Mm.212927	NM_144534	ENSMUSG00000031791	Tmem38a	1110001E17Rik|AI413399|SPR-27|TRIC-A|mg33a	transmembrane protein 38A	protein-coding	17.5	15.5	21.0	2.5	5.5	5.0
Merged-chr9-7567531-4	chr9	7567034	7568034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008611, exon 10 of 10)	exon (NM_008611, exon 10 of 10)	-3862.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43481295-7	chr13	43480777	43481777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019930)	promoter-TSS (NM_019930)	-304.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25044298-4	chr8	25043790	25044790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 10 of 11)	intron (NM_031257, intron 10 of 11)	-5328.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	2.0	10.0	10.5	8.0	11.5	10.5
Merged-chr6-16892094-4	chr6	16891613	16892613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 1 of 6)	intron (NM_031198, intron 1 of 6)	6328.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120801536-2	chr11	120801036	120802036	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	-5141.0	NM_026824	68730.0	Mm.180622	NM_026824	ENSMUSG00000025155	Dus1l	1110032N12Rik	dihydrouridine synthase 1-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122294106-4	chr3	122293630	122294630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030439)	promoter-TSS (NR_030439)	-427.0	NR_030439	791077.0		NR_030439	ENSMUSG00000076456	Mir760	Mirn760|mir-760|mmu-mir-760	microRNA 760	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63372127-4	chr4	63371613	63372613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 18 of 21)	intron (NM_001045514, intron 18 of 21)	9664.0	NM_011016	18406.0	Mm.14173	NM_011016	ENSMUSG00000061540	Orm2	Agp1|Orm-2	orosomucoid 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45247826-4	chr9	45247333	45248333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 4 of 4)	intron (NM_001198971, intron 4 of 4)	18874.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21175800-4	chr19	21175312	21176312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71102.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88707314-4	chr4	88706818	88707818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15190.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-31931887-4	chr9	31931378	31932378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-18593.0	NM_013800	12023.0	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-34778390-4	chr4	34777910	34778910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330756)	promoter-TSS (NM_001330756)	-44.0	NM_025471	66291.0	Mm.28071	NM_025471	ENSMUSG00000028295	Smim8	1810030N24Rik|2810406B13Rik	small integral membrane protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53921169-4	chr18	53920676	53921676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152809, intron 6 of 12)	intron (NM_152809, intron 6 of 12)	59063.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	60.5	145.0	73.5	59.0	102.5	61.0
Merged-chr4-44981448-4	chr4	44980953	44981953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001312880)	promoter-TSS (NM_001312880)	59.0	NM_001312880	76238.0	Mm.196574	NM_080289	ENSMUSG00000035637	Grhpr	1110059D05Rik|6430629L09Rik|Glxr	glyoxylate reductase/hydroxypyruvate reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-42051684-4	chr13	42051144	42052144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007772)	promoter-TSS (NM_007772)	-377.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101907903-4	chr13	101907383	101908383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139666.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-150599682-4	chr5	150599187	150600187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001362416)	TTS (NM_001362416)	-5162.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60274077-4	chr10	60273580	60274580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3548.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122602404-4	chr6	122601898	122602898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031159)	promoter-TSS (NM_031159)	46.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	46.5	92.5	66.5	67.5	118.5	63.5
Merged-chr12-25207982-4	chr12	25207469	25208469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78795.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	56.5	139.0	69.0	49.5	130.5	63.0
Merged-chr4-133659658-4	chr4	133659196	133660196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12951.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	83.0	129.5	104.0	123.5	190.5	162.5
Merged-chr6-26206222-4	chr6	26205703	26206703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	274777.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25142480-4	chr12	25141984	25142984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13310.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	32.5	62.0	35.0	48.0	98.0	71.0
Merged-chr7-46919929-4	chr7	46919439	46920439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348089)	promoter-TSS (NM_001348089)	30.0	NM_001348089	22088.0	Mm.241334	NM_021884	ENSMUSG00000014402	Tsg101	AI255943|CC2	tumor susceptibility gene 101	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99378173-2	chr7	99377673	99378673	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3345.0	NM_001362168	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	2.5	14.5	7.0	4.5	5.0	6.5
Merged-chr2-98667155-4	chr2	98666683	98667683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	1199526.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24073514-4	chr17	24073004	24074004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027008)	promoter-TSS (NM_027008)	-19.0	NM_027008	69259.0	Mm.28171	NM_027008	ENSMUSG00000016946	Kctd5	2610030N08Rik|mKIAA0176	potassium channel tetramerisation domain containing 5	protein-coding	31.5	91.0	56.0	28.0	126.0	76.0
Merged-chr3-135438677-2	chr3	135438177	135439177	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030689)	promoter-TSS (NR_030689)	-12.0	NR_030689	319587.0	Mm.358971	NR_030689	ENSMUSG00000097032	4930539J05Rik	8030475D13Rik	RIKEN cDNA 4930539J05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146404595-4	chr3	146404115	146405115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253768)	promoter-TSS (NM_001253768)	-27.0	NM_001253769	99167.0	Mm.200783	NM_138744	ENSMUSG00000036825	Ssx2ip	AU014939|AU042321|Adip	synovial sarcoma, X 2 interacting protein	protein-coding	8.0	8.5	9.0	3.5	4.0	3.0
Merged-chr9-15357787-4	chr9	15357267	15358267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176976)	promoter-TSS (NM_176976)	21.0	NM_176976	319675.0	Mm.218317	NM_176976	ENSMUSG00000046111	Cep295	5830418K08Rik|5832426L23Rik|Gm1131|Kiaa1731	centrosomal protein 295	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88631082-4	chr5	88630563	88631563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 9 of 13)	intron (NM_001359208, intron 9 of 13)	44517.0	NM_001098476	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-52314501-5	chr14	52313872	52314872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_015772, exon 2 of 2)	exon (NM_015772, exon 2 of 2)	1951.0	NM_001244916	50524.0	Mm.39487	NM_015772	ENSMUSG00000049532	Sall2	AI225809|AW559097|Msal-2|Sal-2|mKIAA0360|p150(Sal2)	spalt like transcription factor 2	protein-coding	12.0	21.0	8.0	2.0	0.5	3.0
Merged-chr10-51494430-2	chr10	51493930	51494930	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291894, intron 6 of 8)	intron (NM_001291894, intron 6 of 8)	3532.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42504472-4	chr10	42503954	42504954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017472, intron 1 of 3)	intron (NM_017472, intron 1 of 3)	2400.0	NM_017472	54198.0	Mm.277870	NM_017472	ENSMUSG00000019804	Snx3	SDP3	sorting nexin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138288870-4	chr4	138288367	138289367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010623, intron 8 of 14)	intron (NM_010623, intron 8 of 14)	-15871.0	NM_007838	13200.0	Mm.7236	NM_007838	ENSMUSG00000028757	Ddost	-	dolichyl-di-phosphooligosaccharide-protein glycotransferase	protein-coding	4.0	5.0	5.0	1.0	15.0	5.5
Merged-chr9-121315715-2	chr9	121315215	121316215	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	18213.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17452428-2	chr16	17451928	17452928	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001277231, exon 1 of 2)	5' UTR (NM_001277231, exon 1 of 2)	443.0	NM_007764	12929.0	Mm.21048	NM_007764	ENSMUSG00000006134	Crkl	1110025F07Rik|AA589403|AI325100|Crkol	v-crk avian sarcoma virus CT10 oncogene homolog-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73175990-4	chr14	73175530	73176530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134083, intron 12 of 14)	intron (NM_134083, intron 12 of 14)	30821.0	NR_030459	751541.0		NR_030459	ENSMUSG00000076121	Mir687	Mirn687|mir-687|mmu-mir-687	microRNA 687	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-160234781-3	chr1	160234280	160235280	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038621, intron 6 of 8)	RMER6A|LTR|ERVK	-21888.0	NM_009786	12301.0	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	17.0	10.0	30.5	32.5	84.0	75.5
Merged-chr10-12875065-4	chr10	12874543	12875543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13308.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	34.0	81.0	39.5	12.0	50.5	25.5
Merged-chr2-132816129-4	chr2	132815616	132816616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356443)	promoter-TSS (NM_001356443)	-25.0	NM_025676	66634.0	Mm.157070	NM_025676	ENSMUSG00000027353	Mcm8	5730432L01Rik	minichromosome maintenance 8 homologous recombination repair factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17723150-4	chr10	17722651	17723651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010828)	promoter-TSS (NM_010828)	-77.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61793938-2	chr18	61793438	61794438	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7276.0	NM_178928	106877.0	Mm.26632	NM_178928	ENSMUSG00000033032	Afap1l1	AI173486	actin filament associated protein 1-like 1	protein-coding	0.0	0.0	2.0	4.5	0.0	5.0
Merged-chr7-143287463-4	chr7	143286973	143287973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_001461, exon 1 of 1)	non-coding (NR_001461, exon 1 of 1)	9074.0	NR_001461	63830.0	Mm.356096	NR_001461	ENSMUSG00000101609	Kcnq1ot1	Kvlqt1-as|Lit1|Tssc8	KCNQ1 overlapping transcript 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129495918-4	chr4	129495427	129496427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4737.0	NM_001085491	68233.0	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-54501929-4	chr9	54501450	54502450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172771)	promoter-TSS (NM_172771)	-324.0	NM_172771	235380.0	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-115385671-4	chr10	115385159	115386159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033261, exon 1 of 35)	exon (NM_001033261, exon 1 of 35)	700.0	NM_001033261	216345.0	Mm.207621	NM_001033261	ENSMUSG00000034163	Zfc3h1	BC033596|Ccdc131|Psrc2	zinc finger, C3H1-type containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-183369630-4	chr1	183369121	183370121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177389)	promoter-TSS (NM_177389)	-56.0	NM_177389	338366.0	Mm.41152	NM_177389		Mia3	9130229H14Rik|A930039G15Rik|AU022327|B230399H06Rik|C80126|Gm1525|TANGO1|Tango	melanoma inhibitory activity 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118667129-2	chr9	118666629	118667629	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 8 of 27)	intron (NM_133721, intron 8 of 27)	-44563.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83109966-4	chr8	83109474	83110474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55378.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	45.0	62.5	66.5	13.0	93.5	45.5
Merged-chr19-41265817-4	chr19	41265295	41266295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1791.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90233969-4	chr9	90233464	90234464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	36805.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111643963-4	chr8	111643487	111644487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358993, intron 1 of 3)	intron (NM_001358993, intron 1 of 3)	544.0	NM_011742	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	158.0	250.5	190.0	95.5	315.5	164.0
Merged-chr13-86046776-4	chr13	86046210	86047210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007749)	promoter-TSS (NM_007749)	85.0	NM_007749	12867.0	Mm.378898	NM_007749	ENSMUSG00000017778	Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding	43.0	195.0	176.0	44.5	141.0	142.0
Merged-chr17-64332162-4	chr17	64331653	64332653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144859)	promoter-TSS (NM_144859)	-270.0	NM_001025309	224938.0	Mm.489681	NM_144859	ENSMUSG00000024083	Pja2	AI447901|AL022700|Neurodap1|mKIAA0438	praja ring finger ubiquitin ligase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19547033-4	chr10	19546511	19547511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44938.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7235028-4	chr19	7234515	7235515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027643, intron 2 of 7)	intron (NM_027643, intron 2 of 7)	6207.0	NM_027643	70999.0	Mm.329605	NM_027643	ENSMUSG00000024764	Naa40	4931433E08Rik|AU023197|Nat11|NatD	N(alpha)-acetyltransferase 40, NatD catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-48495339-4	chr9	48494835	48495835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001326356)	promoter-TSS (NM_001326356)	-5.0	NR_136937	67010.0	Mm.76911	NM_144948	ENSMUSG00000042396	Rbm7	1200007M24Rik|1500011D06Rik|AU041934|AW554393	RNA binding motif protein 7	protein-coding	327.5	737.5	706.5	346.5	777.0	655.5
Merged-chr11-69919882-4	chr11	69919361	69920361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166593, intron 1 of 6)	intron (NM_001166593, intron 1 of 6)	769.0	NM_001166590	276770.0	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-51938579-4	chr1	51938087	51939087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22609.0	NM_010863	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	15.0	72.5	36.0	35.5	49.5	50.0
Merged-chr19-7607431-2	chr19	7606931	7607931	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019516)	promoter-TSS (NM_019516)	-238.0	NM_019516	56072.0	Mm.298242	NM_019516	ENSMUSG00000024972	Lgals12	Grip1|gal-12	lectin, galactose binding, soluble 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107899853-4	chr13	107899350	107900350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-9786.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	46.0	55.5	40.0	11.5	67.0	50.5
Merged-chr1-182125204-4	chr1	182124710	182125710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012058, intron 1 of 2)	CpG	473.0	NM_012058	27058.0	Mm.273196	NM_012058	ENSMUSG00000026511	Srp9	9kDa	signal recognition particle 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97786834-4	chr15	97786325	97787325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026353, intron 1 of 2)	intron (NM_026353, intron 1 of 2)	2460.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34548155-4	chr19	34547659	34548659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2535.0	NM_008332	15958.0	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87421977-4	chr11	87421497	87422497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031386, intron 1 of 30)	RMER15|LTR|ERVL	-5594.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140767898-4	chr5	140767411	140768411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 2 of 3)	intron (NM_010302, intron 2 of 3)	43784.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-57951698-2	chr4	57951198	57952198	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011660, intron 2 of 4)	intron (NM_011660, intron 2 of 4)	4713.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184478185-4	chr1	184477697	184478697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79494.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121385666-4	chr5	121385191	121386191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163470)	promoter-TSS (NM_001163470)	-76.0	NM_172275	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	42.5	147.5	64.0	36.5	180.5	76.0
Merged-chr6-145139998-4	chr6	145139463	145140463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008511, intron 3 of 18)	intron (NM_008511, intron 3 of 18)	-5512.0	NM_001361633	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	42.0	103.5	57.0	43.0	94.5	72.0
Merged-chr13-49204992-2	chr13	49204492	49205492	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026738, intron 3 of 5)	intron (NM_026738, intron 3 of 5)	11034.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34398834-4	chr17	34398340	34399340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001177)	promoter-TSS (NM_001001177)	20.0	NM_001163855	407788.0	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	47.0	160.0	39.5	16.5	71.5	39.0
Merged-chr12-9030148-4	chr12	9029669	9030669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029321, exon 1 of 3)	exon (NM_029321, exon 1 of 3)	172.0	NM_029321	75516.0	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-22148895-5	chr10	22148455	22149455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001254744, exon 1 of 2)	exon (NM_001254744, exon 1 of 2)	315.0	NM_001254744	319887.0	Mm.177746	NM_001254744	ENSMUSG00000097327	E030030I06Rik	-	RIKEN cDNA E030030I06 gene	protein-coding	46.5	140.0	86.5	12.5	17.0	13.5
Merged-chr17-86977388-4	chr17	86976897	86977897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145491, intron 2 of 4)	HAL1ME|LINE|L1	14286.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	25.5	47.5	33.0	23.0	26.5	31.5
Merged-chr1-80785311-4	chr1	80784815	80785815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26762.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136008100-4	chr1	136007597	136008597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160145)	promoter-TSS (NM_001160145)	-122.0	NM_001160145	66241.0	Mm.41773	NM_025439	ENSMUSG00000026411	Tmem9	1500015G18Rik|AW545782	transmembrane protein 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5811676-4	chr2	5811224	5812224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133837, intron 6 of 12)	intron (NM_133837, intron 6 of 12)	-33310.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	4.0	5.5	4.5	10.0	5.0	4.0
Merged-chr1-191183475-4	chr1	191182951	191183951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007498)	promoter-TSS (NM_007498)	-118.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-46912696-4	chr14	46912190	46913190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	29725.0	NM_001037221	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	101.5	142.5	166.5	61.0	136.0	79.0
Merged-chr14-16242110-2	chr14	16241610	16242610	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001359883, exon 2 of 3)	exon (NM_001359883, exon 2 of 3)	1221.0	NM_001359883	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	2.0	8.0	2.5	0.0	3.5	0.0
Merged-chr9-100546128-5	chr9	100545595	100546595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010878)	promoter-TSS (NM_010878)	39.0	NM_010878	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	113.5	232.5	180.0	113.5	305.5	190.5
Merged-chr6-49073860-4	chr6	49073394	49074394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029353)	promoter-TSS (NM_029353)	99.0	NM_029353	75593.0	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	27.0	46.0	71.0	36.5	71.0	53.5
Merged-chr1-171658678-4	chr1	171658162	171659162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5625.0	NM_144539	75345.0	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	4.5	20.0	18.5	20.5	18.0	16.0
Merged-chr15-73060278-4	chr15	73059784	73060784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164641, intron 1 of 17)	intron (NM_001164641, intron 1 of 17)	920.0	NM_001164641	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	3.0	10.5	6.0	3.5	17.0	9.5
Merged-chr5-129787213-4	chr5	129786642	129787642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009838)	promoter-TSS (NM_009838)	111.0	NM_133900	100678.0	Mm.271784	NM_133900	ENSMUSG00000029446	Psph	AI480570|PSP|PSPase	phosphoserine phosphatase	protein-coding	49.0	129.0	94.0	57.0	122.5	136.0
Merged-chr11-6366097-4	chr11	6365588	6366588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29037.0	NM_001005867	52915.0	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86406495-4	chr1	86405993	86406993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17132.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23574376-4	chr13	23573913	23574913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178188)	promoter-TSS (NM_178188)	32.0	NM_178188	319165.0	Mm.390553	NM_178188	ENSMUSG00000071478	Hist1h2ad	-	histone cluster 1, H2ad	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31038013-1	chr17	31037513	31038513	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-19681.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	7.5	11.0	20.5	18.5	46.5	33.0
Merged-chr1-136126377-4	chr1	136125873	136126873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	4810.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11333084-4	chr2	11332564	11333564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6425.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47359384-2	chr19	47358884	47359884	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 5 of 14)	intron (NM_008018, intron 5 of 14)	-85795.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr15-10834214-3	chr15	10833717	10834717	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5166.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27976510-1	chr17	27976010	27977010	+	1000.0	f0_balb.idr	intron (NM_181413, intron 2 of 24)	intron (NM_181413, intron 2 of 24)	67204.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9131098-2	chr4	9130598	9131598	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138195.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66147767-4	chr14	66147277	66148277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144803, intron 5 of 6)	intron (NM_144803, intron 5 of 6)	6817.0	NM_144803	110902.0	Mm.57350	NM_144803	ENSMUSG00000022041	Chrna2	Acra-2|Acra2|BC011490	cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164084196-4	chr2	164083689	164084689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021420, intron 3 of 10)	intron (NM_021420, intron 3 of 10)	10011.0	NM_021420	58231.0	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76847057-4	chr11	76846579	76847579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007754)	promoter-TSS (NM_007754)	-71.0	NM_007754	12874.0	Mm.276736	NM_007754	ENSMUSG00000020841	Cpd	AA960140|AW322530|D830034L15Rik	carboxypeptidase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126807488-4	chr8	126806920	126807920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41600.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59721757-4	chr15	59721269	59722269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73115.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	9.5	11.0	28.5	13.5	7.0	9.0
Merged-chr2-32288196-4	chr2	32287696	32288696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133852)	promoter-TSS (NM_133852)	-57.0	NM_133852	99412.0	Mm.106376	NM_133852	ENSMUSG00000002546	Golga2	AW555139|GM130|mKIAA4150	golgi autoantigen, golgin subfamily a, 2	protein-coding	4.5	8.5	10.0	4.5	9.0	10.0
Merged-chr7-132686664-4	chr7	132686140	132687140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 6 of 6)	intron (NM_029609, intron 6 of 6)	75997.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-106574711-4	chr5	106574195	106575195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-116529.0	NM_001005477	104382.0	Mm.271593	NM_001005477	ENSMUSG00000034384	Barhl2	E130309B19Rik|MBH1	BarH like homeobox 2	protein-coding	2.5	0.0	3.0	0.0	2.5	0.0
Merged-chr9-56041877-4	chr9	56041380	56042380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011992)	promoter-TSS (NM_011992)	35.0	NM_011992	26611.0	Mm.1782	NM_011992	ENSMUSG00000032320	Rcn2	AA408742|Tcbp49	reticulocalbin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120057231-4	chr1	120056721	120057721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012322, intron 12 of 13)	HAL1|LINE|L1	16559.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	30.0	35.0	37.0	9.0	11.5	27.0
Merged-chr3-69156642-4	chr3	69156131	69157131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126533, intron 2 of 2)	intron (NR_126533, intron 2 of 2)	25398.0	NR_126533	381452.0	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	179.5	294.5	245.0	134.5	327.5	210.0
Merged-chr14-54754764-4	chr14	54754279	54755279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	27107.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	120.5	355.5	256.5	116.5	310.5	205.0
Merged-chr3-97232032-2	chr3	97231532	97232532	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4668.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122068093-4	chr14	122067591	122068591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33417.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	0.0	0.0	1.5	0.0	2.0	0.5
Merged-chr6-38354477-4	chr6	38353976	38354976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001347122, exon 1 of 13)	5' UTR (NM_001347122, exon 1 of 13)	127.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8667183-4	chr3	8666677	8667677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010423)	promoter-TSS (NM_010423)	-139.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-19666030-4	chr2	19665524	19666524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7962.0	NM_027715	71198.0	Mm.83981	NM_027715	ENSMUSG00000043415	Otud1	4933428L19Rik	OTU domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77763998-2	chr11	77763498	77764498	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13237.0	NM_001291213	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173940529-3	chr1	173940026	173941026	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302649, intron 2 of 9)	Lx8b|LINE|L1	1966.0	NM_001302649	15950.0	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Ifi203a|Ifi203b|Mndal	interferon activated gene 203	protein-coding	25.5	21.0	62.0	29.0	122.5	91.5
Merged-chr10-42269552-4	chr10	42269064	42270064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	7178.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-30618437-4	chr10	30617934	30618934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025798)	promoter-TSS (NM_025798)	-68.0	NM_025798	66847.0	Mm.46218	NM_025798	ENSMUSG00000019791	Hint3	0610010I17Rik|AV009015|HINT-3|HINT-4|HINT4	histidine triad nucleotide binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161351144-4	chr1	161350655	161351655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVL-int|LTR|ERVL	-44283.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	2.5	4.0	2.5	6.0	5.0	3.0
Merged-chr12-85943041-4	chr12	85942546	85943546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 28 of 32)	intron (NM_001347395, intron 28 of 32)	118096.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81293843-2	chr10	81293343	81294343	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	880.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-53590449-4	chr5	53589974	53590974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080927)	promoter-TSS (NM_001080927)	-12.0	NM_001359152	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-72710855-3	chr1	72710369	72711369	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009084)	promoter-TSS (NM_009084)	-391.0	NM_009084	19981.0	Mm.21529	NM_009084	ENSMUSG00000046330	Rpl37a	-	ribosomal protein L37a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-125145387-4	chr4	125144897	125145897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17516.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	1.0	1.0	3.5	1.0	14.0	0.5
Merged-chr16-24199966-4	chr16	24199459	24200459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117269.0	NR_155457	108168278.0	Mm.417246	NR_155457		Gm46545	-	predicted gene, 46545	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-9428147-2	chr6	9427647	9428647	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A2|LTR|ERVK	478128.0	NM_008751	18231.0	Mm.46954	NM_008751	ENSMUSG00000046178	Nxph1	C130005L03Rik	neurexophilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-63691919-3	chr18	63691430	63692430	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016792, intron 1 of 7)	CpG	429.0	NM_016792	53382.0	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37300852-4	chr1	37300368	37301368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	1030.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131110937-4	chr1	131110432	131111432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13089.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	62.5	104.0	84.0	50.0	68.0	80.0
Merged-chr14-20734576-4	chr14	20734080	20735080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010811)	promoter-TSS (NM_010811)	-18.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	8.5	14.5	11.0	5.0	15.5	7.0
Merged-chr1-78657798-4	chr1	78657309	78658309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028817)	promoter-TSS (NM_028817)	-16.0	NM_001136222	74205.0	Mm.276016	NM_028817	ENSMUSG00000032883	Acsl3	2610510B12Rik|Acs3|C85929|Facl3|Pro2194	acyl-CoA synthetase long-chain family member 3	protein-coding	7.0	17.5	30.5	26.5	10.5	17.0
Merged-chr6-128446279-4	chr6	128445778	128446778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028593, intron 2 of 4)	intron (NR_028593, intron 2 of 4)	7521.0	NR_028593	791299.0	Mm.297516	NR_028592	ENSMUSG00000059659	Gm10069	-	predicted gene 10069	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70853715-4	chr17	70853226	70854226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164074)	promoter-TSS (NM_001164074)	-194.0	NM_001164074	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	27.5	62.0	67.5	32.5	69.5	73.0
Merged-chr1-92910717-4	chr1	92910225	92911225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_138577)	promoter-TSS (NR_138577)	-36.0	NR_138577	75995.0	Mm.46179	NR_138577	ENSMUSG00000097251	5033417F24Rik	6330419D11Rik	RIKEN cDNA 5033417F24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45054334-4	chr7	45053807	45054807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022999, intron 6 of 6)	intron (NM_022999, intron 6 of 6)	-1426.0	NM_175022	233210.0	Mm.219137	NM_175022	ENSMUSG00000046574	Prr12	6720469B10|BC058674	proline rich 12	protein-coding	41.5	94.5	67.0	44.0	115.5	71.5
Merged-chr11-116767910-2	chr11	116767406	116768406	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_011371, intron 3 of 8)	intron (NM_011371, intron 3 of 8)	7601.0	NM_011371	20445.0	Mm.436887	NM_011371	ENSMUSG00000009588	St6galnac1	Siat7a	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1	protein-coding	0.0	2.5	0.0	6.0	14.5	18.5
Merged-chr10-39451916-2	chr10	39451416	39452416	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	82117.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-68430841-4	chr2	68430322	68431322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 1 of 17)	intron (NM_016866, intron 1 of 17)	41159.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-13256410-4	chr1	13255932	13256932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 2 of 22)	intron (NM_008678, intron 2 of 22)	115997.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	60.0	54.5	40.5	9.0	35.5	11.0
Merged-chr2-73547430-4	chr2	73546936	73547936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-17949.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24141672-4	chr17	24141173	24142173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011062)	promoter-TSS (NM_011062)	-79.0	NM_001080773	18607.0	Mm.10504	NM_011062	ENSMUSG00000024122	Pdpk1	Pdk1	3-phosphoinositide dependent protein kinase 1	protein-coding	2.5	0.5	10.5	0.0	2.5	3.5
Merged-chr2-4919012-4	chr2	4918502	4919502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010726)	promoter-TSS (NM_010726)	6.0	NM_010726	16922.0	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	70.5	168.0	110.5	136.0	365.5	273.5
Merged-chr15-93917088-4	chr15	93916565	93917565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045737, intron 2 of 3)	intron (NR_045737, intron 2 of 3)	10046.0	NR_045737	77248.0	Mm.410768	NR_045737	ENSMUSG00000116360	9430014N10Rik	-	RIKEN cDNA 9430014N10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35135284-5	chr17	35134771	35135771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252468)	promoter-TSS (NM_001252468)	93.0	NM_057171	224727.0	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	56.0	211.5	170.0	59.0	242.0	168.5
Merged-chr7-19715705-4	chr7	19715172	19716172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016871)	promoter-TSS (NM_016871)	-243.0	NM_016871	53333.0	Mm.61682	NM_016871	ENSMUSG00000002984	Tomm40	AW539759|Mom35|Tom40	translocase of outer mitochondrial membrane 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84131651-4	chr15	84131138	84132138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8463.0	NM_029427	75772.0	Mm.159565	NM_029427	ENSMUSG00000018868	Pnpla5	4833426H19Rik|GS2L	patatin-like phospholipase domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161528339-4	chr1	161527845	161528845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33688.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	3.0	3.5	10.0	2.0	8.0	0.5
Merged-chr10-88357166-4	chr10	88356658	88357658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027878)	promoter-TSS (NM_027878)	-83.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86185928-6	chr15	86185440	86186440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145475, exon 1 of 13)	5' UTR (NM_145475, exon 1 of 13)	201.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43957385-4	chr4	43956891	43957891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027450)	promoter-TSS (NM_027450)	-311.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102982671-5	chr14	102982173	102983173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_039592)	promoter-TSS (NR_039592)	-36.0	NM_177715	239217.0	Mm.246466	NM_177715	ENSMUSG00000098557	Kctd12	AU046135|AW538430|Pfet1|Pfetin	potassium channel tetramerisation domain containing 12	protein-coding	0.0	4.5	0.0	0.0	6.0	0.0
Merged-chr2-140170643-4	chr2	140170130	140171130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081090)	promoter-TSS (NM_001081090)	-16.0	NM_027093	69487.0	Mm.287921	NM_027093	ENSMUSG00000027384	Ndufaf5	2310003L22Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80553397-4	chr17	80552896	80553896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360144, intron 3 of 9)	intron (NM_001360144, intron 3 of 9)	10438.0	NM_001033443	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152105511-4	chr2	152105008	152106008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029688)	promoter-TSS (NM_029688)	-16.0	NM_029688	76650.0	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21912601-2	chr16	21912101	21913101	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172821, intron 8 of 12)	Lx8b|LINE|L1	20632.0	NM_172821	71751.0	Mm.420837	NM_172821	ENSMUSG00000033618	Map3k13	C130026N12Rik|LZK	mitogen-activated protein kinase kinase kinase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50415475-4	chr17	50414993	50415993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16E1|LTR|ERVL	-94054.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102309105-4	chr11	102308592	102309592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001044383, intron 12 of 19)	CpG	8195.0	NM_001044383	21429.0	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	18.0	19.0	23.5	4.0	3.5	11.5
Merged-chr12-79318571-2	chr12	79318071	79319071	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 5 of 10)	intron (NM_009014, intron 5 of 10)	21220.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-50033989-2	chr8	50033489	50034489	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-334123.0	NR_046067	100039954.0	Mm.400419	NR_046067	ENSMUSG00000110281	Gm2516	-	predicted gene 2516	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-52257889-4	chr14	52257373	52258373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-20301.0	NM_201637	67772.0	Mm.289934	NM_201637	ENSMUSG00000053754	Chd8	5830451P18Rik|AU015341|Duplin|HELSNF1|mKIAA1564	chromodomain helicase DNA binding protein 8	protein-coding	24.0	66.0	45.0	17.5	96.5	50.5
Merged-chr1-128359716-4	chr1	128359218	128360218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313695)	promoter-TSS (NM_001313695)	-13.0	NM_008567	17219.0	Mm.4933	NM_008567	ENSMUSG00000026355	Mcm6	ASP-l1|D1Wsu22e|Mcmd6	minichromosome maintenance complex component 6	protein-coding	13.0	17.5	32.5	1.0	28.5	19.5
Merged-chr12-102426530-4	chr12	102426035	102427035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	intron (NM_011175, intron 1 of 13)	13278.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	45.0	92.0	80.5	61.5	145.5	98.5
Merged-chr16-57502434-4	chr16	57501917	57502917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-46825.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	49.0	97.5	39.0	58.0	92.0	49.0
Merged-chr11-69901017-4	chr11	69900536	69901536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316696)	promoter-TSS (NM_001316696)	-50.0	NM_027419	70419.0	Mm.272859	NM_027419	ENSMUSG00000018570	2810408A11Rik	1700019L01Rik|4930470J18Rik	RIKEN cDNA 2810408A11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6084442-2	chr19	6083942	6084942	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026410)	promoter-TSS (NM_026410)	533.0	NM_001356994	81909.0	Mm.289471	NM_024231	ENSMUSG00000024792	Zfpl1	-	zinc finger like protein 1	protein-coding	14.0	24.0	17.0	6.5	24.0	36.0
Merged-chr10-127591148-4	chr10	127590648	127591648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 11 of 88)	intron (NM_008512, intron 11 of 88)	30000.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	22.5	65.0	50.5	28.0	86.0	48.5
Merged-chr15-101583393-3	chr15	101582894	101583894	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5178.0	NR_002868	432985.0	Mm.491078	NR_002868		Gm5476	EG432985|Kb17P	type II keratin Kb17P pseudogene	pseudo	7.0	2.0	3.5	5.5	11.0	11.0
Merged-chr15-89355699-4	chr15	89355204	89356204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271601)	promoter-TSS (NM_001271601)	-15.0	NR_073376	52683.0	Mm.143167	NM_001115132	ENSMUSG00000008690	Ncaph2	-	non-SMC condensin II complex, subunit H2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16052039-4	chr7	16051564	16052564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19781.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	13.0	19.0	9.0	3.0	30.5	13.5
Merged-chr3-96294022-4	chr3	96293520	96294520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010186)	promoter-TSS (NM_010186)	-51.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	29.0	68.5	67.0	24.0	57.5	53.0
Merged-chr11-70652562-2	chr11	70652062	70653062	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011072, intron 2 of 2)	intron (NM_011072, intron 2 of 2)	2088.0	NM_011072	18643.0	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	1.5	7.0	3.0	6.0	7.0	0.0
Merged-chr5-45669815-4	chr5	45669299	45670299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019438)	promoter-TSS (NM_019438)	-91.0	NR_073433	69788.0	Mm.381492	NR_073433	ENSMUSG00000104986	1600023N17Rik	AV119442	RIKEN cDNA 1600023N17 gene	ncRNA	18.5	22.5	28.0	10.0	17.5	21.5
Merged-chr4-33282545-4	chr4	33282051	33283051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27760.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86170853-4	chr15	86170346	86171346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-14882.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19216465-4	chr3	19215969	19216969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356295, intron 5 of 7)	intron (NM_001356295, intron 5 of 7)	28174.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-82240868-4	chr12	82240362	82241362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 2 of 23)	intron (NM_001167983, intron 2 of 23)	-70487.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4078447-4	chr7	4077917	4078917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033568, intron 6 of 8)	intron (NR_033568, intron 6 of 8)	-15213.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-74732252-4	chr14	74731753	74732753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285423)	promoter-TSS (NM_001285423)	-44.0	NM_001285423	13885.0	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24306829-4	chr2	24306323	24307323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15627.0	NM_153077	215274.0	Mm.218750	NM_153077	ENSMUSG00000046845	Il1f10	-	interleukin 1 family, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-4309690-4	chr9	4309200	4310200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026276)	promoter-TSS (NM_026276)	-43.0	NM_001164574	69149.0	Mm.25946	NM_026962	ENSMUSG00000025893	Kbtbd3	2200003A07Rik|Bklhd3	kelch repeat and BTB (POZ) domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41473917-4	chr10	41473413	41474413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2401.0	NM_001164433	171580.0	Mm.290431	NM_138315	ENSMUSG00000019823	Mical1	MICAL|MICAL-1|Nical	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19304385-2	chr7	19303885	19304885	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008036, exon 4 of 4)	3' UTR (NM_008036, exon 4 of 4)	5660.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr3-90216611-2	chr3	90216111	90217111	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293741, intron 1 of 7)	B1_Mus2|SINE|Alu	2896.0	NM_001293741	68328.0	Mm.29355	NM_026677	ENSMUSG00000027935	Rab13	0610007N03Rik|B230212B15Rik	RAB13, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-104817075-4	chr13	104816567	104817567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026072)	promoter-TSS (NM_026072)	-103.0	NM_026075	67288.0	Mm.125465	NM_026075	ENSMUSG00000021716	Srek1ip1	3110031B13Rik|AI462702|AV348305|AW121048|Sfrs12ip1|Srsf12ip1	splicing regulatory glutamine/lysine-rich protein 1interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-121414436-4	chr2	121413941	121414941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153075)	promoter-TSS (NM_153075)	539.0	NM_007952	14827.0	Mm.263177	NM_007952	ENSMUSG00000027248	Pdia3	58kDa|ERp57|ERp60|ERp61|Erp|Grp58|PDI|PDI-Q2|PI-PLC|PLC[a]|Plca	protein disulfide isomerase associated 3	protein-coding	65.5	209.0	136.0	58.5	170.5	107.0
Merged-chr17-35821167-4	chr17	35820644	35821644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133662)	promoter-TSS (NM_133662)	-569.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118699035-4	chr7	118698512	118699512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019580, intron 1 of 5)	intron (NM_019580, intron 1 of 5)	6726.0	NM_019580	56209.0	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	5.0	22.0	27.5	24.0	26.5	21.0
Merged-chr16-87495918-4	chr16	87495443	87496443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009840)	promoter-TSS (NM_009840)	-74.0	NM_009840	12469.0	Mm.328673	NM_009840	ENSMUSG00000025613	Cct8	AI132397|Cctq|Tcpq	chaperonin containing Tcp1, subunit 8 (theta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120278454-4	chr14	120277946	120278946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	2777.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91851835-7	chr16	91851315	91852315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 21 of 28)	intron (NM_001110275, intron 21 of 28)	79815.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	26.0	61.0	35.5	9.5	33.5	23.5
Merged-chr2-153291382-4	chr2	153290883	153291883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008444)	promoter-TSS (NM_008444)	-33.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-40950791-4	chr3	40950292	40951292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040399, intron 1 of 9)	CpG-9127	161.0	NM_001040399	214048.0	Mm.46782	NM_027663	ENSMUSG00000025762	Larp1b	1700108L22Rik|4933421B21Rik|AA690246|Larp2	La ribonucleoprotein domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84409010-4	chr12	84408519	84409519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007647)	promoter-TSS (NM_007647)	10.0	NM_007647	12499.0	Mm.10211	NM_007647	ENSMUSG00000021236	Entpd5	AI196558|AI987697|Cd39l4|ER-UDPase|NTPDase-5|NTPDase5|Pcph|mNTPase	ectonucleoside triphosphate diphosphohydrolase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126105471-2	chr4	126104971	126105971	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 1 of 10)	L2c|LINE|L2	1514.0	NM_001145827	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	4.0	4.5	1.0	0.0	2.5	2.0
Merged-chr14-32931904-4	chr14	32931418	32932418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178791, intron 7 of 7)	intron (NM_178791, intron 7 of 7)	-59464.0	NM_001146021	67580.0	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46552941-4	chr17	46552442	46553442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_105942)	TTS (NR_105942)	947.0	NR_105942	102466778.0		NR_105942	ENSMUSG00000106514	Mir6976	mmu-mir-6976	microRNA 6976	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-95591267-4	chr1	95590768	95591768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009183, exon 5 of 5)	3' UTR (NM_009183, exon 5 of 5)	76326.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80230367-2	chr15	80229867	80230867	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3713.0	NM_001357659	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	2.0	0.0	0.0	0.0	0.0	0.5
Merged-chr13-58128113-4	chr13	58127559	58128559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029872, exon 1 of 1)	exon (NM_029872, exon 1 of 1)	497.0	NM_029872	77134.0	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	36.5	46.0	45.0	38.5	41.5	43.0
Merged-chr2-101177982-4	chr2	101177479	101178479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-446769.0	NM_009020	19374.0	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30579360-4	chr14	30578847	30579847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7198.0	NR_037237	100526475.0		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	127.0	558.5	339.5	73.0	155.5	135.5
Merged-chr2-6256436-4	chr2	6255930	6256930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 3 of 6)	intron (NR_040333, intron 3 of 6)	-43436.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70076853-4	chr14	70076370	70077370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289925)	promoter-TSS (NM_001289925)	-575.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-15922480-4	chr7	15921972	15922972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009156)	promoter-TSS (NM_009156)	-101.0	NM_009156	20364.0	Mm.42829	NM_009156	ENSMUSG00000041571	Selenow	Sepw1|selW	selenoprotein W	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95258683-4	chr11	95258198	95259198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2831.0	NM_053093	93670.0	Mm.40085	NM_053093	ENSMUSG00000020872	Tac4	AW489379|PPT-C	tachykinin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-5539569-4	chr15	5539117	5540117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045274, intron 1 of 4)	intron (NR_045274, intron 1 of 4)	43299.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55415910-3	chr12	55415405	55416405	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310583, intron 6 of 6)	intron (NM_001310583, intron 6 of 6)	17080.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70437645-2	chr11	70437145	70438145	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106064)	promoter-TSS (NR_106064)	-610.0	NR_106064	102465670.0		NR_106064	ENSMUSG00000099109	Mir7115	Gm27902|mmu-mir-7115	microRNA 7115	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-57530826-4	chr8	57530345	57531345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 11 of 11)	Lx7|LINE|L1	19002.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167072023-5	chr2	167071545	167072545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6752.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160211875-4	chr2	160211394	160212394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	115600.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93458861-4	chr2	93458362	93459362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040532, intron 2 of 4)	intron (NR_040532, intron 2 of 4)	2989.0	NM_001271461	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	14.5	35.0	18.0	19.5	27.0	26.0
Merged-chr11-45752426-4	chr11	45751921	45752921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55662.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-51977600-4	chr9	51977106	51978106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14004.0	NM_007996	14148.0	Mm.1061	NM_007996	ENSMUSG00000032051	Fdx1	-	ferredoxin 1	protein-coding	0.0	18.0	2.0	2.5	3.5	4.0
Merged-chr7-4494309-4	chr7	4493793	4494793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029834, intron 3 of 21)	intron (NM_029834, intron 3 of 21)	7387.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-29026426-4	chr15	29025930	29026930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	686974.0	NR_039542	100628607.0		NR_039542	ENSMUSG00000092639	Mir3964	mmu-mir-3964|mu-mir-3964	microRNA 3964	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29070799-4	chr17	29070312	29071312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036469, intron 1 of 1)	intron (NR_036469, intron 1 of 1)	8314.0	NR_036469	100504267.0	Mm.438550	NR_036469	ENSMUSG00000085912	Trp53cor1	Gm16197|linc-p21|lincRNA-p21	tumor protein p53 pathway corepressor 1	ncRNA	1.5	8.0	10.0	3.5	11.0	6.0
Merged-chr4-128840568-4	chr4	128840036	128841036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34424.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90135311-2	chr7	90134811	90135811	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	5098.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	6.0	23.5	20.0	15.0	27.5	21.0
Merged-chr1-58720223-4	chr1	58719713	58720713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	6927.0	NM_001355056	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156986432-4	chr1	156985917	156986917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46791.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	17.5	79.0	38.5	12.5	18.5	14.0
Merged-chr7-19496388-4	chr7	19495904	19496904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11927.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141017522-2	chr7	141017022	141018022	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033632)	promoter-TSS (NM_001033632)	-630.0	NM_001033632	213002.0	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85437744-4	chr12	85437249	85438249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36141.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54606035-4	chr14	54605537	54606537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028890)	promoter-TSS (NM_028890)	-129.0	NM_028890	74359.0	Mm.79815	NM_028890	ENSMUSG00000022179	4931414P19Rik	Rtfc	RIKEN cDNA 4931414P19 gene	protein-coding	44.5	94.0	81.0	40.5	53.0	58.5
Merged-chr13-56703672-4	chr13	56703178	56704178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164042)	promoter-TSS (NM_001164042)	10.0	NM_001164042	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103051588-4	chr14	103051082	103052082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008392, intron 4 of 4)	intron (NM_008392, intron 4 of 4)	4570.0	NM_008392	16365.0	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156674373-4	chr1	156673883	156674883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023141)	promoter-TSS (NM_023141)	-44.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	106.5	117.5	156.0	88.0	267.0	172.0
Merged-chr10-121471756-4	chr10	121471276	121472276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	4474.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	60.0	132.0	117.5	103.0	147.0	104.0
Merged-chr11-70446877-4	chr11	70446379	70447379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5052.0	NM_025397	66172.0	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156558716-4	chr1	156558220	156559220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009595)	promoter-TSS (NM_009595)	-67.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-58692265-4	chr3	58691746	58692746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045167)	promoter-TSS (NR_045167)	142.0	NM_009174	20439.0	Mm.2847	NM_009174	ENSMUSG00000036432	Siah2	AA415433|Sinh2	siah E3 ubiquitin protein ligase 2	protein-coding	119.5	220.0	261.0	117.0	238.5	206.0
Merged-chr19-37561695-4	chr19	37561194	37562194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175353, intron 1 of 21)	intron (NM_175353, intron 1 of 21)	11276.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	6.5	3.5	0.5	4.5	2.0	5.5
Merged-chr15-89429481-4	chr15	89428977	89429977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_004843, exon 1 of 27)	non-coding (NR_004843, exon 1 of 27)	450.0	NR_037154	12651.0	Mm.485045	NM_007692	ENSMUSG00000022617	Chkb	Chetk|Chkl|Ck|Ck/Ek|Ck/Ek-beta|Ckb|Ckekb|Ek	choline kinase beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100203588-4	chr12	100203073	100204073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313934, intron 2 of 5)	intron (NM_001313934, intron 2 of 5)	3429.0	NM_001313934	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50276080-4	chr11	50275565	50276565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 1 of 4)	B4A|SINE|B4	16271.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3649204-4	chr4	3648709	3649709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7297.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	21.0	67.0	26.0	30.0	59.0	34.0
Merged-chr8-35666008-3	chr8	35665515	35666515	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 2 of 2)	intron (NM_001081279, intron 2 of 2)	-76995.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	0.0	6.0	1.5	14.5	14.5	21.0
Merged-chr11-6299681-4	chr11	6299213	6300213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010956, intron 2 of 22)	B3|SINE|B2	7134.0	NM_001361902	18293.0	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	0.0	2.0	0.5	0.0	3.0	1.5
Merged-chr5-121838829-4	chr5	121838348	121839348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1989.0	NM_008507	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121506808-4	chr10	121506287	121507287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30537.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	23.5	65.0	67.5	23.0	82.0	58.0
Merged-chr17-24674446-2	chr17	24673905	24674905	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348231, intron 1 of 11)	intron (NM_001348231, intron 1 of 11)	4718.0	NM_183149	213753.0	Mm.219581	NM_183149	ENSMUSG00000041130	Zfp598	BC023040|Ntrap|Znf598	zinc finger protein 598	protein-coding	4.5	20.5	10.0	0.5	0.0	3.5
Merged-chr5-135394574-4	chr5	135394079	135395079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148932)	promoter-TSS (NM_148932)	-33.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8875413-4	chr10	8874902	8875902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	10668.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	237.5	416.5	376.0	195.0	564.0	314.5
Merged-chr15-76640023-4	chr15	76639523	76640523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183091)	promoter-TSS (NM_183091)	-94.0	NM_183091	72749.0	Mm.358749	NM_183091	ENSMUSG00000059323	Tonsl	2810439M11Rik|Nfkbil2	tonsoku-like, DNA repair protein	protein-coding	5.0	8.0	9.5	14.0	11.0	9.5
Merged-chr10-69186451-4	chr10	69185961	69186961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22091.0	NM_001252636	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-62760679-4	chr13	62760177	62761177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030493)	promoter-TSS (NR_030493)	-62.0	NR_030493	751548.0		NR_030493	ENSMUSG00000096098	Mir713	Mirn713|mir-713|mmu-mir-713	microRNA 713	ncRNA	9.5	22.5	12.0	3.5	8.0	12.5
Merged-chr7-88277388-4	chr7	88276907	88277907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311790)	promoter-TSS (NM_001311790)	-678.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8734045-4	chr3	8733578	8734578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67040.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22858966-2	chr8	22858466	22859466	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081149)	promoter-TSS (NM_001081149)	-573.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-94583135-4	chr3	94582651	94583651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029721)	promoter-TSS (NM_029721)	-435.0	NM_029721	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	14.0	28.5	30.5	4.5	19.0	36.0
Merged-chr7-113207280-4	chr7	113206767	113207767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007489)	promoter-TSS (NM_007489)	-198.0	NM_001243048	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	2.0	21.0	6.0	18.0	17.0	16.0
Merged-chr9-85357615-4	chr9	85357122	85358122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30472.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24662733-4	chr7	24662224	24663224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030681, exon 2 of 2)	non-coding (NR_030681, exon 2 of 2)	1430.0	NR_030681	100043706.0	Mm.483825	NR_030681	ENSMUSG00000108470	Gm4598	-	predicted gene 4598	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-75281026-2	chr3	75280526	75281526	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10948.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-28675375-4	chr12	28674897	28675897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134052, intron 1 of 3)	CpG	190.0	NM_134052	104923.0	Mm.291504	NM_134052	ENSMUSG00000020629	Adi1	AL024210|Fe-ARD|MTCBP-1|Ni-ARD	acireductone dioxygenase 1	protein-coding	107.0	243.0	208.0	61.0	105.5	99.5
Merged-chr15-89591900-4	chr15	89591376	89592376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026817)	promoter-TSS (NM_026817)	47.0	NM_026817	68708.0	Mm.23258	NM_026817	ENSMUSG00000022621	Rabl2	1110031N17Rik|AW549303|Rabl2a	RAB, member RAS oncogene family-like 2	protein-coding	0.0	1.0	3.5	0.0	0.5	2.0
Merged-chr19-29470714-2	chr19	29470214	29471214	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021396, exon 6 of 6)	3' UTR (NM_021396, exon 6 of 6)	51273.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.0	2.0	1.0	0.0	2.0	1.0
Merged-chr2-11192499-4	chr2	11192010	11193010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	20128.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37339797-4	chr10	37339298	37340298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-200872.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-37007466-4	chr15	37006983	37007983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026521)	promoter-TSS (NM_026521)	-81.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91456067-4	chr16	91455555	91456555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9049.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	12.5	47.5	34.5	17.5	46.0	27.0
Merged-chr3-27302543-4	chr3	27302042	27303042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14535.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-74632606-3	chr5	74632130	74633130	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159577, intron 2 of 10)	Kanga1c|DNA|TcMar-Tc2	45242.0	NM_001159580	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	0.0	1.5	1.0	4.0	0.0	5.5
Merged-chr5-72559244-3	chr5	72558751	72559751	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133921, exon 2 of 23)	exon (NM_133921, exon 2 of 23)	394.0	NM_001359837	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116814706-3	chr11	116814197	116815197	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347633, intron 2 of 4)	intron (NM_001347633, intron 2 of 4)	13349.0	NM_026280	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	5.5	0.0	3.5	27.5	22.5	18.0
Merged-chr4-116177141-4	chr4	116176676	116177676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3804.0	NM_001099295	67323.0	Mm.45442	NM_001099295	ENSMUSG00000078593	1700042G07Rik	-	RIKEN cDNA 1700042G07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167361817-4	chr2	167361311	167362311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12633.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80933833-4	chr10	80933329	80934329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3738.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50530354-4	chr17	50529839	50530839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	20792.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	29.5	21.0	23.5	8.0	16.5	23.5
Merged-chr18-77804837-4	chr18	77804370	77805370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 1 of 14)	intron (NM_013831, intron 1 of 14)	-8480.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	11.0	11.0	18.0	1.5	7.0	3.5
Merged-chr11-86587007-4	chr11	86586513	86587513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 10 of 11)	intron (NM_001356531, intron 10 of 11)	-2855.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98881470-4	chr15	98880963	98881963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026967)	promoter-TSS (NM_026967)	-49.0	NM_026967	69159.0	Mm.259708	NM_026967	ENSMUSG00000023755	Rhebl1	1810036J22Rik|Rheb2	Ras homolog enriched in brain like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79347825-1	chr15	79347325	79348325	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_001304831)	promoter-TSS (NM_001304831)	-236.0	NM_001304831	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	9.0	19.0	19.5	4.0	6.0	12.0
Merged-chr5-115541778-2	chr5	115541278	115542278	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	RSINE1|SINE|B4	-17689.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	1.5	5.5	3.5	3.0	20.0	5.5
Merged-chr5-134232275-4	chr5	134231782	134232782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2657.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-26581002-2	chr6	26580502	26581502	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	649576.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-22359199-4	chr6	22358697	22359697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-3116.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-89686289-4	chr10	89685810	89686810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_130956)	promoter-TSS (NR_130956)	-16.0	NM_001310704	213326.0	Mm.27651	NM_198021	ENSMUSG00000069539	Scyl2	AU015688|AW536445|BC030932|CVAK104|D10Ertd802e	SCY1-like 2 (S. cerevisiae)	protein-coding	15.5	18.0	8.0	2.5	17.0	3.0
Merged-chr11-106122899-4	chr11	106122377	106123377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 5 of 15)	intron (NM_011947, intron 5 of 15)	37050.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89315346-4	chr15	89314859	89315859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170561)	promoter-TSS (NM_001170561)	-48.0	NM_001170561	77980.0	Mm.35483	NM_030019	ENSMUSG00000036529	Sbf1	2610510A08Rik|B230113C15Rik|Mtmr5|mKIAA3020	SET binding factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79495277-2	chr11	79494777	79495777	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010897, intron 36 of 57)	intron (NM_010897, intron 36 of 57)	8805.0	NM_019409	18377.0	Mm.93335	NM_019409	ENSMUSG00000049612	Omg	-	oligodendrocyte myelin glycoprotein	protein-coding	32.5	47.5	16.0	42.0	44.5	39.0
Merged-chr4-147848481-4	chr4	147848025	147849025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355730)	promoter-TSS (NM_001355730)	-107.0	NM_198619	242747.0	Mm.332053	NM_198619	ENSMUSG00000059423	Zfp933	2810408P10Rik	zinc finger protein 933	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4879838-4	chr16	4879340	4880340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145359)	promoter-TSS (NM_145359)	11.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49987166-4	chr16	49986647	49987647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045001, intron 1 of 3)	intron (NR_045001, intron 1 of 3)	6687.0	NR_045001	628951.0	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138171200-4	chr5	138170698	138171698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021392)	promoter-TSS (NM_021392)	68.0	NM_001356577	17220.0	Mm.378965	NM_008568	ENSMUSG00000029730	Mcm7	AI747533|Mcmd7|mCDC47	minichromosome maintenance complex component 7	protein-coding	12.5	34.0	27.0	4.5	25.5	8.0
Merged-chr15-84351462-4	chr15	84350940	84351940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25321.0	NM_001162500	64099.0	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	0.5	0.0	0.0	0.5	0.0	0.0
Merged-chr9-66593579-3	chr9	66593095	66594095	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302116)	promoter-TSS (NM_001302116)	-480.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-136892122-4	chr2	136891624	136892624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001141946)	promoter-TSS (NM_001141946)	-44.0	NM_028834	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132593092-4	chr4	132592610	132593610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29043.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	52.5	89.5	66.5	30.0	67.0	47.0
Merged-chr4-141477814-4	chr4	141477302	141478302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019763, exon 12 of 16)	exon (NM_019763, exon 12 of 16)	33129.0	NM_009541	22642.0	Mm.389590	NM_009541	ENSMUSG00000006215	Zbtb17	AA589413|Lp-1|Miz1|Zfp100|mZ13	zinc finger and BTB domain containing 17	protein-coding	17.5	29.5	54.0	31.0	37.0	34.0
Merged-chr8-90877120-4	chr8	90876643	90877643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	48308.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	21.0	86.0	79.0	29.0	141.5	90.0
Merged-chr11-29515035-4	chr11	29514502	29515502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026465)	promoter-TSS (NM_026465)	31.0	NM_026465	67939.0	Mm.251087	NM_026465	ENSMUSG00000032673	Prorsd1	2010316F05Rik|Ncrna00117|Prdxdd1	prolyl-tRNA synthetase domain containing 1	protein-coding	10.0	53.5	44.5	12.0	36.0	32.5
Merged-chr14-10134052-4	chr14	10133534	10134534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 5 of 9)	intron (NM_001360141, intron 5 of 9)	249939.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-83485906-4	chr4	83485459	83486459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355203, intron 1 of 10)	CpG-10005	504.0	NM_001290527	101739.0	Mm.105331	NM_133948	ENSMUSG00000028484	Psip1	AA408851|AU015605|Dfs70|Ledgfa|Ledgfb|Psip2	PC4 and SFRS1 interacting protein 1	protein-coding	2.5	2.5	1.0	2.0	2.5	0.5
Merged-chr2-76610878-4	chr2	76610378	76611378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37116.0	NM_011871	23992.0	Mm.277250	NM_011871	ENSMUSG00000002731	Prkra	AV120107|PRK|Pact|RAX|lear	protein kinase, interferon inducible double stranded RNA dependent activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-41393399-4	chr7	41392920	41393920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183167)	promoter-TSS (NM_183167)	-41.0	NM_001199330	233168.0	Mm.379390	NM_183167	ENSMUSG00000056383	AI987944	-	expressed sequence AI987944	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-129715505-4	chr5	129715003	129716003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356954)	promoter-TSS (NM_001356954)	6.0	NM_001356959	66258.0	Mm.249809	NM_025450	ENSMUSG00000034211	Mrps17	1810006P02Rik|Mprs17	mitochondrial ribosomal protein S17	protein-coding	3.5	0.0	1.5	0.0	2.0	4.5
Merged-chr5-142401443-4	chr5	142400946	142401946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199068)	promoter-TSS (NM_199068)	-51.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110808222-4	chr5	110807737	110808737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347394, intron 3 of 27)	intron (NM_001347394, intron 3 of 27)	1844.0	NM_009469	22241.0	Mm.271898	NM_009469	ENSMUSG00000029512	Ulk1	AU041434|Unc51.1|mKIAA0722	unc-51 like kinase 1	protein-coding	41.0	136.5	91.0	52.5	75.5	86.0
Merged-chr17-51179401-4	chr17	51178906	51179906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285991)	promoter-TSS (NM_001285991)	-54.0	NM_001285991	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-44380394-4	chr18	44379882	44380882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027490)	promoter-TSS (NM_027490)	-118.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12730318-2	chr18	12729818	12730818	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028341, intron 10 of 13)	intron (NM_028341, intron 10 of 13)	-11037.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104340326-4	chr8	104339842	104340842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024217)	promoter-TSS (NM_024217)	-252.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165981706-2	chr2	165981206	165982206	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-10931.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	2.0	22.5	12.5	15.5	26.5	17.0
Merged-chr2-11777623-4	chr2	11777102	11778102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348237)	promoter-TSS (NM_001348237)	-17.0	NM_001348236	50755.0	Mm.24088	NM_015792	ENSMUSG00000058594	Fbxo18	AU015756|Fbh1|Fbx18	F-box protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32877741-4	chr16	32877245	32878245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027226)	promoter-TSS (NM_027226)	-39.0	NM_001356387	69823.0	Mm.12831	NM_027226	ENSMUSG00000022800	Fyttd1	2010005M05Rik|3830411L18Rik|3830421F13Rik|4933423A17Rik|AI098218|AW539567|C85190	forty-two-three domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105605113-4	chr8	105604533	105605533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081241)	promoter-TSS (NM_001081241)	-196.0	NM_001081241	75687.0	Mm.41261	NM_001081241	ENSMUSG00000038604	Ripor1	2310066E14Rik|AI837433|Fam65a	RHO family interacting cell polarization regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91712963-4	chr6	91712460	91713460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	28893.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98427357-4	chr7	98426862	98427862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-13054.0	NM_001130693	14918.0	Mm.389928	NM_001034890	ENSMUSG00000074003	Gucy2d	-	guanylate cyclase 2d	protein-coding	13.5	11.0	17.0	13.0	9.0	10.5
Merged-chr16-24625741-4	chr16	24625207	24626207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-96148.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114908776-2	chr11	114908276	114909276	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18735.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-56970114-2	chr1	56969614	56970614	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358580, intron 2 of 11)	intron (NM_001358580, intron 2 of 11)	1220.0	NM_139146	212712.0	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr1-172206728-4	chr1	172206231	172207231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001329869)	promoter-TSS (NM_001329869)	73.0	NM_001329871	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	139.5	251.5	178.5	127.5	293.5	230.0
Merged-chr12-110606338-4	chr12	110605844	110606844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030238, intron 1 of 76)	Lx7|LINE|L1	4949.0	NM_030238	13424.0	Mm.181430	NM_030238	ENSMUSG00000018707	Dync1h1	9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325	dynein cytoplasmic 1 heavy chain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-56950867-4	chr9	56950362	56951362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178374)	promoter-TSS (NM_178374)	-62.0	NM_178374	66069.0	Mm.220984	NM_178374	ENSMUSG00000055334	Snupn	0610031A09Rik|Rnut1|Snupn1	snurportin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152386624-4	chr1	152386128	152387128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025677)	promoter-TSS (NM_025677)	54.0	NM_025677	66637.0	Mm.379120	NM_025677	ENSMUSG00000014980	Tsen15	5730449L18Rik|AL023077|Sen15	tRNA splicing endonuclease subunit 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90267286-4	chr3	90266789	90267789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201407, intron 1 of 27)	intron (NM_201407, intron 1 of 27)	775.0	NM_201407	229541.0	Mm.30571	NM_201407	ENSMUSG00000042404	Dennd4b	-	DENN/MADD domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-82289347-2	chr1	82288847	82289847	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010570, exon 1 of 2)	exon (NM_010570, exon 1 of 2)	2092.0	NM_010570	16367.0	Mm.4952	NM_010570	ENSMUSG00000055980	Irs1	G972R|IRS-1	insulin receptor substrate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-140125620-4	chr7	140125103	140126103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346725)	promoter-TSS (NM_001346725)	-54.0	NM_001346725	212503.0	Mm.486735	NM_153783	ENSMUSG00000025464	Paox	2410012F02Rik|AI118225|Pao	polyamine oxidase (exo-N4-amino)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45815145-2	chr7	45814645	45815645	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001112701)	promoter-TSS (NM_001112701)	-829.0	NM_001112701	19158.0	Mm.272130	NM_011181	ENSMUSG00000003269	Cyth2	ARNO|CLM2|Pscd2	cytohesin 2	protein-coding	0.0	2.5	8.5	0.0	0.5	1.5
Merged-chr11-44540443-4	chr11	44539920	44540920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 3 of 5)	MTD|LTR|ERVL-MaLR	21043.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	18.0	15.0	19.0	3.5	17.5	14.0
Merged-chr1-38129937-4	chr1	38129433	38130433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359287)	promoter-TSS (NM_001359287)	-267.0	NM_001359288	56210.0	Mm.389103	NM_019570	ENSMUSG00000026082	Rev1	1110027I23Rik|AU022044|Rev1l	REV1, DNA directed polymerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181864346-4	chr2	181863844	181864844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025901)	promoter-TSS (NM_025901)	-16.0	NM_025901	67005.0	Mm.271986	NM_025901	ENSMUSG00000038628	Polr3k	12.3kDa|1500004O14Rik|AI196849|AU014893|C11|RPC10|RPC11	polymerase (RNA) III (DNA directed) polypeptide K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80115649-4	chr10	80115135	80116135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011492)	promoter-TSS (NM_011492)	-168.0	NM_001301853	20869.0	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93034158-4	chr16	93033669	93034669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-208095.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-109917577-4	chr2	109917075	109918075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172671)	promoter-TSS (NM_172671)	-72.0	NM_172671	107515.0	Mm.277351	NM_172671	ENSMUSG00000050199	Lgr4	9130225G07|A330106J01Rik|A930009A08Rik|Gpr48	leucine-rich repeat-containing G protein-coupled receptor 4	protein-coding	3.0	15.5	12.5	4.0	24.0	23.0
Merged-chr8-85492497-4	chr8	85492041	85493041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173866)	promoter-TSS (NM_173866)	-76.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63558681-4	chr4	63558164	63559164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356354)	promoter-TSS (NM_001356354)	-99.0	NM_001356355	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54409419-4	chr14	54408916	54409916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253680)	promoter-TSS (NM_001253680)	56.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	128.0	264.0	199.5	28.5	109.5	109.0
Merged-chr13-21975018-4	chr13	21974512	21975512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6169.0	NM_001162928	195236.0	Mm.204664	NM_001162928	ENSMUSG00000016982	Pom121l2	Gm24	POM121 membrane glycoprotein-like 2 (rat)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-127981228-4	chr1	127980704	127981704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 12 of 20)	intron (NM_001285945, intron 12 of 20)	112431.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	13.0	37.0	25.0	11.0	30.0	17.0
Merged-chr15-40954913-4	chr15	40954413	40955413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356998, intron 4 of 6)	intron (NM_001356998, intron 4 of 6)	-218788.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155812894-4	chr1	155812389	155813389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023268)	promoter-TSS (NM_023268)	10.0	NM_023268	104009.0	Mm.27035	NM_023268	ENSMUSG00000033684	Qsox1	1300003H02Rik|QSOX|Qscn6|SOx|b2b2673Clo	quiescin Q6 sulfhydryl oxidase 1	protein-coding	13.5	24.5	31.0	57.5	110.5	87.0
Merged-chr4-40156296-4	chr4	40155812	40156812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007386, intron 1 of 20)	intron (NM_007386, intron 1 of 20)	13047.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75573341-4	chr11	75572841	75573841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173388, exon 14 of 14)	3' UTR (NM_173388, exon 14 of 14)	-14738.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95982337-3	chr3	95981831	95982831	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H-int|LTR|ERVL-MaLR	-3179.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	13.0	13.0	29.5	93.0	176.0	122.5
Merged-chr10-60262581-4	chr10	60262064	60263064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15064.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32352819-4	chr18	32352322	32353322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-24395.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-114933997-4	chr9	114933490	114934490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175380)	promoter-TSS (NM_175380)	-3.0	NM_175380	333433.0	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	31.0	50.0	44.0	17.5	50.5	39.0
Merged-chr3-68708871-2	chr3	68708371	68709371	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	17447.0	NM_008351	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52513856-4	chr2	52513364	52514364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	44747.0	NM_146123	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150831239-4	chr2	150830726	150831726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153781, exon 20 of 20)	3' UTR (NM_153781, exon 20 of 20)	11344.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23609901-4	chr16	23609406	23610406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023386)	promoter-TSS (NM_023386)	-13.0	NM_023386	67775.0	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51597446-4	chr10	51596931	51597931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-6971.0	NM_029894	77296.0	Mm.30588	NM_029894	ENSMUSG00000019909	Fam162b	9430073N08Rik	family with sequence similarity 162, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-72944138-4	chr17	72943622	72944622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	25817.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-78266107-2	chr16	78265607	78266607	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10653.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-68739191-4	chr7	68738705	68739705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001042592, exon 8 of 8)	3' UTR (NM_001042592, exon 8 of 8)	10033.0	NM_001042592	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	0.0	5.5	1.0	0.0	5.0	0.0
Merged-chr5-53588619-4	chr5	53588113	53589113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080928, intron 1 of 10)	intron (NM_001080928, intron 1 of 10)	-1733.0	NM_009035	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59845383-5	chr15	59844887	59845887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50428.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.0	6.5	4.0	2.5	4.5	9.0
Merged-chr5-33629771-4	chr5	33629302	33630302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178390)	promoter-TSS (NM_178390)	-167.0	NM_001359463	74504.0	Mm.294695	NM_178390	ENSMUSG00000037339	Fam53a	2410018C17Rik|5430419M09Rik|Dntnp	family with sequence similarity 53, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58487427-4	chr13	58486941	58487941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84098.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63082336-4	chr14	63081888	63082888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	27315.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-23751391-4	chr5	23750860	23751860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178403, intron 9 of 15)	intron (NM_178403, intron 9 of 15)	28303.0	NM_001289781	78697.0	Mm.58660	NM_178403	ENSMUSG00000057541	Pus7	C330017I15Rik	pseudouridylate synthase 7	protein-coding	16.0	3.5	3.5	6.0	5.5	12.0
Merged-chr1-86470704-4	chr1	86470217	86471217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44388.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr5-107901008-1	chr5	107900508	107901508	+	1000.0	f1_balb.idr	intron (NM_016980, intron 1 of 7)	intron (NM_016980, intron 1 of 7)	480.0	NM_016980	100503670.0	Mm.277897	NM_016980	ENSMUSG00000058558	Rpl5	U21RNA	ribosomal protein L5	protein-coding	11.5	20.0	41.5	10.5	51.5	36.0
Merged-chr2-3961590-4	chr2	3961086	3962086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-56097.0	NM_001347086	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100529420-4	chr12	100528913	100529913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8591.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55443333-4	chr12	55442815	55443815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44490.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44379387-4	chr9	44378877	44379877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021395)	promoter-TSS (NM_021395)	-113.0	NM_021395	12282.0	Mm.116721	NM_021395	ENSMUSG00000032115	Hyou1	AI415631|CBP-140|Cab140|Grp170|Orp150	hypoxia up-regulated 1	protein-coding	26.5	74.5	47.5	40.5	56.5	36.5
Merged-chr11-32644240-4	chr11	32643741	32644741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271349, intron 1 of 11)	intron (NM_001271349, intron 1 of 11)	1686.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17544775-4	chr12	17544257	17545257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013614)	promoter-TSS (NM_013614)	-116.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	16.0	38.5	16.5	23.0	52.5	19.5
Merged-chr14-32812622-4	chr14	32812125	32813125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163616, intron 4 of 4)	intron (NM_001163616, intron 4 of 4)	-21337.0	NM_001164485	105511.0	Mm.32231	NM_001164485	ENSMUSG00000078127	Fam170b	4922501K12Rik|AI449756	family with sequence similarity 170, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-23860528-2	chr19	23860028	23861028	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177034, intron 1 of 12)	intron (NM_177034, intron 1 of 12)	101652.0	NM_177034	319924.0	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78328391-4	chr11	78327887	78328887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201406)	promoter-TSS (NM_201406)	-35.0	NM_201406	276846.0	Mm.295908	NM_201406	ENSMUSG00000041958	Pigs	BC058979|Gm393|Gm689	phosphatidylinositol glycan anchor biosynthesis, class S	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66296972-4	chr14	66296497	66297497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029979)	promoter-TSS (NM_029979)	-28.0	NM_029979	66854.0	Mm.43871	NM_029979	ENSMUSG00000022043	Trim35	0710005M05Rik|A430106H13Rik|AW046487|HLS5|Mair|NC8|mKIAA1098	tripartite motif-containing 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26210643-2	chr17	26210143	26211143	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081069, exon 17 of 17)	exon (NM_001081069, exon 17 of 17)	7702.0	NM_001081069	50782.0	Mm.109840	NM_001081069	ENSMUSG00000024186	Rgs11	C78048	regulator of G-protein signaling 11	protein-coding	0.0	8.0	1.5	1.0	0.0	0.5
Merged-chr7-133637610-4	chr7	133637115	133638115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178115)	promoter-TSS (NM_178115)	-60.0	NM_178115	214764.0	Mm.174044	NM_145995	ENSMUSG00000039990	Edrf1	2700050L05Rik|AU022667|AW558805	erythroid differentiation regulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-61593623-4	chr2	61593108	61594108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149324, intron 1 of 9)	intron (NR_149324, intron 1 of 9)	511.0	NR_149323	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128739722-4	chr7	128739231	128740231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145955, intron 1 of 15)	intron (NM_145955, intron 1 of 15)	698.0	NM_145955	210711.0	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111430621-4	chr12	111430126	111431126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289487, intron 13 of 13)	intron (NM_001289487, intron 13 of 13)	-12035.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24842784-4	chr5	24842285	24843285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053075)	promoter-TSS (NM_053075)	-424.0	NM_053075	19744.0	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129788901-4	chr4	129788411	129789411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31568.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	115.0	284.5	171.5	65.5	238.0	163.0
Merged-chr1-59482032-4	chr1	59481533	59482533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008057)	promoter-TSS (NM_008057)	-114.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	22.5	56.5	58.5	33.0	70.5	50.0
Merged-chr13-100409276-3	chr13	100408735	100409735	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008670, intron 15 of 15)	intron (NM_008670, intron 15 of 15)	43629.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	0.0	2.5	4.0	0.5	4.0	9.0
Merged-chr6-108466243-4	chr6	108465741	108466741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-23502.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	8.5	6.5	10.0	5.0	4.0	11.5
Merged-chr2-152398914-4	chr2	152398416	152399416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011438)	promoter-TSS (NM_011438)	-870.0	NM_011438	20667.0	Mm.28424	NM_011438	ENSMUSG00000051817	Sox12	2010205A02Rik	SRY (sex determining region Y)-box 12	protein-coding	0.0	0.0	0.0	0.5	0.0	1.0
Merged-chr16-10412125-4	chr16	10411641	10412641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011955, exon 2 of 11)	exon (NM_011955, exon 2 of 11)	203.0	NM_011955	26425.0	Mm.29037	NM_011955	ENSMUSG00000022503	Nubp1	-	nucleotide binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30961060-1	chr5	30960560	30961560	+	1000.0	f0_c57.idr	promoter-TSS (NM_016703)	promoter-TSS (NM_016703)	-733.0	NM_016703	50907.0	Mm.272414	NM_016703	ENSMUSG00000045302	Preb	C85705	prolactin regulatory element binding	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-37223169-4	chr6	37222662	37223662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	76814.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67478716-4	chr18	67478206	67479206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144867, intron 6 of 6)	intron (NM_144867, intron 6 of 6)	13857.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	1.5	0.0	4.5	0.0	1.5	0.0
Merged-chr11-3140039-2	chr11	3139552	3140552	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 22 of 32)	intron (NM_030207, intron 22 of 32)	16031.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94989849-4	chr11	94989346	94990346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1366.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-160906849-1	chr1	160906349	160907349	+	1000.0	f0_c57.idr	intron (NM_001024952, intron 1 of 19)	CpG	438.0	NM_001024952	381305.0	Mm.329667	NM_001024952	ENSMUSG00000040423	Rc3h1	5730557L09Rik|Gm551|N28103|mKIAA2025	RING CCCH (C3H) domains 1	protein-coding	34.5	40.0	44.5	27.5	35.5	51.5
Merged-chr12-4199347-2	chr12	4198847	4199847	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_138305, exon 8 of 21)	exon (NM_138305, exon 8 of 21)	34618.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47925249-2	chr17	47924749	47925749	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110824)	promoter-TSS (NM_001110824)	-617.0	NM_001110825	74123.0	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	0.0	0.0	1.5	0.0	0.0	0.5
Merged-chr10-37257731-4	chr10	37257225	37258225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-118799.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126585694-4	chr8	126585119	126586119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7817.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	16.5	57.0	32.0	22.5	50.5	42.5
Merged-chr11-75458824-4	chr11	75458296	75459296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2743.0	NR_030711	100042498.0	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122443550-4	chr8	122443048	122444048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138656)	promoter-TSS (NM_138656)	-108.0	NR_045696	100689703.0	Mm.271989	NR_045696		9330133O14Rik	-	RIKEN cDNA 9330133O14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-72786397-2	chr2	72785897	72786897	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_102349, intron 5 of 5)	intron (NR_102349, intron 5 of 5)	27320.0	NR_102348	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39918944-4	chr1	39918448	39919448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 2 of 29)	intron (NM_001252202, intron 2 of 29)	18035.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29219272-3	chr11	29218783	29219783	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_134034, exon 16 of 16)	3' UTR (NM_134034, exon 16 of 16)	27989.0	NM_025740	216618.0	Mm.128663	NM_025740	ENSMUSG00000020462	Cfap36	2300003H10|4931428D14Rik|Ccdc104	cilia and flagella associated protein 36	protein-coding	10.0	7.0	5.5	22.5	9.5	7.5
Merged-chr1-39469216-4	chr1	39468713	39469713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357521, intron 1 of 19)	intron (NM_001357521, intron 1 of 19)	9534.0	NM_018775	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71094017-4	chr17	71093521	71094521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083934, intron 21 of 36)	intron (NM_001083934, intron 21 of 36)	74464.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	16.5	23.0	15.5	1.0	7.5	12.0
Merged-chr13-44491078-4	chr13	44490589	44491589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51362.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	31.5	47.0	55.5	21.5	7.5	39.0
Merged-chr5-122264501-4	chr5	122263998	122264998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039153)	promoter-TSS (NM_001039153)	-38.0	NM_001039153	654470.0	Mm.28804	NM_001039153	ENSMUSG00000038593	Tctn1	G730031O11Rik|Tect1	tectonic family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140505967-2	chr5	140505467	140506467	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021528, intron 1 of 1)	intron (NM_021528, intron 1 of 1)	358.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23816315-4	chr13	23815801	23816801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144836, intron 5 of 11)	intron (NM_144836, intron 5 of 11)	9274.0	NM_144836	218103.0	Mm.24030	NM_144836	ENSMUSG00000036110	Slc17a2	C730032N17Rik|NPT3	solute carrier family 17 (sodium phosphate), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-53784440-4	chr1	53783931	53784931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133810, intron 1 of 7)	intron (NM_133810, intron 1 of 7)	784.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	225.0	450.5	358.0	187.5	400.0	315.0
Merged-chr11-120617038-2	chr11	120616538	120617538	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024229, intron 1 of 13)	intron (NM_024229, intron 1 of 13)	852.0	NM_024229	68671.0	Mm.21439	NM_024229	ENSMUSG00000025137	Pcyt2	1110033E03Rik|ET	phosphate cytidylyltransferase 2, ethanolamine	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76958677-2	chr12	76958177	76959177	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146176, intron 1 of 3)	intron (NM_001146176, intron 1 of 3)	3571.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29527049-4	chr6	29526558	29527558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311083, intron 1 of 9)	CpG	433.0	NM_012057	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-59130356-4	chr12	59129840	59130840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146034, intron 1 of 24)	intron (NM_146034, intron 1 of 24)	592.0	NM_001165254	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91096244-2	chr2	91095744	91096744	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011355)	promoter-TSS (NM_011355)	-434.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46835626-4	chr17	46835119	46836119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-4206.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-77946485-4	chr2	77945977	77946977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290740)	promoter-TSS (NM_001290740)	-121.0	NM_030560	80744.0	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30232260-1	chr7	30231760	30232760	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_001360648)	promoter-TSS (NM_001360648)	-63.0	NM_025548	66411.0	Mm.27947	NM_025548	ENSMUSG00000006095	Tbcb	2410007D12Rik|AU041393|CG22|CKAPI|Ckap1	tubulin folding cofactor B	protein-coding	25.5	99.0	57.0	22.5	102.0	87.5
Merged-chr9-58627395-4	chr9	58626887	58627887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357751, intron 3 of 8)	intron (NM_001357751, intron 3 of 8)	45147.0	NM_001357751	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118589468-4	chr9	118588941	118589941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17268.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116077665-4	chr9	116077172	116078172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	97691.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81350355-4	chr13	81349843	81350843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 83 of 89)	intron (NM_054053, intron 83 of 89)	282801.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131909935-4	chr2	131909452	131910452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011170)	promoter-TSS (NM_011170)	24.0	NM_001278256	19122.0	Mm.648	NM_011170	ENSMUSG00000079037	Prnp	AA960666|AI325101|CD230|PrP|PrP<C>|PrPC|PrPSc|Prn-i|Prn-p|Sinc|prP27-30|prP33-35C	prion protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92301657-2	chr16	92301157	92302157	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138743, intron 1 of 3)	intron (NM_138743, intron 1 of 3)	354.0	NM_138743	68936.0	Mm.21698	NM_138743	ENSMUSG00000051989	Smim11	1190017O12Rik|C21orf51|Fam165b|Smim11a	small integral membrane protein 11	protein-coding	1.5	4.0	6.5	0.0	2.0	6.0
Merged-chr7-90442754-4	chr7	90442299	90443299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145151)	promoter-TSS (NM_145151)	18.0	NR_073438	233490.0	Mm.29496	NM_145151	ENSMUSG00000051451	Crebzf	1110034C16Rik|6330417B10Rik|LAZip|LAZipII|SMILE|Zf	CREB/ATF bZIP transcription factor	protein-coding	18.5	111.5	84.0	17.0	98.5	58.0
Merged-chr8-123224849-4	chr8	123224337	123225337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194446)	promoter-TSS (NM_194446)	-4.0	NM_194446	234854.0	Mm.190984	NM_194444	ENSMUSG00000033862	Cdk10	BC017131	cyclin-dependent kinase 10	protein-coding	46.0	71.0	72.5	38.0	107.0	74.0
Merged-chr11-70650595-4	chr11	70650100	70651100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316728, intron 8 of 9)	intron (NM_001316728, intron 8 of 9)	3313.0	NM_027445	70510.0	Mm.261818	NM_027445	ENSMUSG00000040746	Rnf167	0610010G05Rik|5730408C10Rik|AU019305|AV328608	ring finger protein 167	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57760909-4	chr10	57760389	57761389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-24034.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69580340-4	chr11	69579848	69580848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011640)	promoter-TSS (NM_011640)	-11.0	NM_011640	22059.0	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29366367-4	chr19	29365867	29366867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1071.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180231833-4	chr1	180231335	180232335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128605, intron 7 of 10)	L1MB3|LINE|L1	14115.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-124312282-3	chr9	124311795	124312795	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243117, intron 1 of 4)	intron (NM_001243117, intron 1 of 4)	399.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-6715813-4	chr10	6715323	6716323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-42770.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	6.5	4.0	10.0	2.5	1.0	1.5
Merged-chr5-135479389-4	chr5	135478880	135479880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	65742.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111937322-4	chr8	111936831	111937831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16|LTR|ERVK	-3372.0	NM_026693	93739.0	Mm.371666	NM_026693	ENSMUSG00000031950	Gabarapl2	0610012F20Rik|2900019O08Rik|AI173605|GATE-16|Gef2	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86365572-4	chr6	86365074	86366074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025591)	promoter-TSS (NM_025591)	-109.0	NM_025591	66488.0	Mm.422972	NM_025591	ENSMUSG00000057497	Fam136a	2010309E21Rik|AW124904|Hyccin	family with sequence similarity 136, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-72255186-3	chr1	72254682	72255682	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155355, intron 1 of 3)	U2|snRNA|snRNA	11189.0	NR_155355	320933.0	Mm.440953	NR_155355		D230017M19Rik	B930094L07Rik	RIKEN cDNA D230017M19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101244136-4	chr15	101243618	101244618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18932.0	NR_045328	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	12.0	17.5	18.0	16.5	32.5	14.5
Merged-chr17-43558038-4	chr17	43557526	43558526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10425.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-73133223-4	chr11	73132709	73133709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361245, intron 24 of 30)	intron (NM_001361245, intron 24 of 30)	5085.0	NM_010353	14841.0	Mm.42045	NM_010353	ENSMUSG00000050107	Haspin	Gsg2	histone H3 associated protein kinase	protein-coding	9.5	7.0	7.0	3.5	7.5	4.5
Merged-chr11-110538402-4	chr11	110537911	110538911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59071.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	28.0	52.0	47.0	28.0	67.5	55.0
Merged-chr13-3523655-4	chr13	3523140	3524140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33A_|LTR|ERVL	-14435.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	11.5	19.5	14.0	24.5	9.0	5.0
Merged-chr2-103606017-4	chr2	103605515	103606515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	MIRb|SINE|MIR	39705.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76368929-4	chr15	76368447	76369447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021555)	promoter-TSS (NM_021555)	49.0	NM_021555	59053.0	Mm.133202	NM_021555	ENSMUSG00000022554	Hgh1	Brp16|D15Ertd741e|Fam203a|MNCb-5873	HGH1 homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-85562686-3	chr17	85562186	85563186	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55710.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86676850-3	chr4	86676367	86677367	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR34B_MM|LTR|ERVK	-6808.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	1.5	7.5	4.0	3.0	0.5	0.0
Merged-chr17-35425803-2	chr17	35425301	35426301	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_023124, exon 3 of 5)	exon (NM_023124, exon 3 of 5)	924.0	NM_207648	110557.0	Mm.439827	NM_207648	ENSMUSG00000073409	H2-Q6	0610037M15Rik|H-2Q6|Qa-6|Qa6	histocompatibility 2, Q region locus 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81414977-2	chr10	81414477	81415477	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 2 of 8)	intron (NM_026756, intron 2 of 8)	1320.0	NR_106141	102465778.0		NR_106141	ENSMUSG00000105379	Mir1191b	mmu-mir-1191b	microRNA 1191b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120970691-4	chr2	120970177	120971177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009461)	promoter-TSS (NM_009461)	38.0	NM_009461	22222.0	Mm.389330	NM_009461	ENSMUSG00000027272	Ubr1	AI504731	ubiquitin protein ligase E3 component n-recognin 1	protein-coding	5.5	44.5	18.5	12.0	22.0	34.5
Merged-chr7-99182844-4	chr7	99182352	99183352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026384)	promoter-TSS (NM_026384)	-139.0	NM_026384	67800.0	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	26.0	50.0	47.0	30.0	84.0	74.5
Merged-chr13-74260197-7	chr13	74259687	74260687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317351, intron 2 of 9)	CpG	32144.0	NM_009644	11624.0	Mm.290446	NM_009644	ENSMUSG00000021575	Ahrr	mKIAA1234	aryl-hydrocarbon receptor repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107340524-4	chr9	107340004	107341004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175486)	promoter-TSS (NM_175486)	-136.0	NM_175486	235599.0	Mm.71039	NM_175486	ENSMUSG00000037977	6430571L13Rik	-	RIKEN cDNA 6430571L13 gene	protein-coding	17.0	27.0	33.5	7.0	20.5	16.0
Merged-chr8-26698746-4	chr8	26698281	26699281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125642.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	211.0	406.5	288.0	143.0	333.5	219.5
Merged-chr1-133133671-4	chr1	133133172	133134172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133819, intron 1 of 1)	intron (NM_133819, intron 1 of 1)	2506.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	17.5	25.5	19.0	12.5	40.0	14.5
Merged-chr10-77613682-4	chr10	77613175	77614175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_125903)	promoter-TSS (NR_125903)	-34.0	NR_125903	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164444600-4	chr2	164444076	164445076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1388.0	NM_011521	20971.0	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53273583-4	chr19	53273054	53274054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME4b|LINE|L1	-18349.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133672591-4	chr4	133672099	133673099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145956)	promoter-TSS (NM_001145956)	48.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	30.0	75.0	26.5	55.0	94.5	53.5
Merged-chr11-107473311-4	chr11	107472813	107473813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2593.0	NM_145823	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128706732-4	chr4	128706215	128707215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 2 of 14)	intron (NM_018774, intron 2 of 14)	17977.0	NM_018774	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50818293-4	chr9	50817814	50818814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045601, intron 12 of 13)	intron (NR_045601, intron 12 of 13)	-38610.0	NM_001034085	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	6.5	21.5	19.0	12.5	24.0	15.5
Merged-chr9-106308763-4	chr9	106308246	106309246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 9 of 10)	intron (NM_027354, intron 9 of 10)	27685.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	65.5	171.0	135.0	54.5	134.0	80.0
Merged-chr2-160360645-4	chr2	160360139	160361139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6426.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	12.0	51.5	10.5	15.5	12.0	16.0
Merged-chr18-11352533-4	chr18	11352016	11353016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-280760.0	NM_001252495	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127080271-4	chr7	127079788	127080788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-11148.0	NM_178901	101602.0	Mm.490357	NM_178901	ENSMUSG00000045165	AI467606	-	expressed sequence AI467606	protein-coding	38.0	57.0	45.0	50.0	25.5	39.5
Merged-chr1-131942991-4	chr1	131942460	131943460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19955.0	NM_001177628	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	2.5	4.5	12.0	3.5	4.5	12.5
Merged-chr11-29808740-4	chr11	29808253	29809253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 17 of 41)	intron (NM_146016, intron 17 of 41)	16915.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	15.5	54.0	47.5	27.0	57.5	52.0
Merged-chr10-67311609-4	chr10	67311096	67312096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26315.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-35166031-4	chr4	35165540	35166540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-8556.0	NM_178061	214944.0	Mm.32968	NM_178061	ENSMUSG00000073910	Mob3b	8430436F23Rik|A430018A01Rik|Mobkl2b	MOB kinase activator 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28446078-1	chr7	28445578	28446578	+	1000.0	f1_balb.idr	intron (NM_001039192, intron 6 of 6)	intron (NM_001039192, intron 6 of 6)	5141.0	NM_001039192	63986.0	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	0.0	1.0	0.5	0.0	0.0	0.0
Merged-chr7-83616439-4	chr7	83615933	83616933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177695, intron 18 of 22)	intron (NM_177695, intron 18 of 22)	-15584.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-143917314-2	chr1	143916814	143917814	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86835.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113487232-4	chr13	113486727	113487727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 1 of 6)	intron (NR_045501, intron 1 of 6)	15617.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25605588-4	chr15	25605131	25606131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16919.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64381017-4	chr5	64380536	64381536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	86906.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	12.5	22.0	11.5	13.0	18.5	9.5
Merged-chr8-85025615-4	chr8	85025097	85026097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357202)	promoter-TSS (NM_001357202)	-310.0	NM_001357202	56495.0	Mm.41475	NM_019652	ENSMUSG00000052456	Asna1	1810048H22Rik|ArsA	arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	protein-coding	225.0	381.0	305.5	156.5	338.5	249.5
Merged-chr1-59912924-4	chr1	59912421	59913421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037725)	promoter-TSS (NM_001037725)	-85.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3182008-1	chr11	3181508	3182508	+	1000.0	f1_balb.idr	intron (NM_030207, intron 4 of 32)	intron (NM_030207, intron 4 of 32)	11455.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92301226-4	chr16	92300730	92301730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138743)	promoter-TSS (NM_138743)	-73.0	NM_138743	68936.0	Mm.21698	NM_138743	ENSMUSG00000051989	Smim11	1190017O12Rik|C21orf51|Fam165b|Smim11a	small integral membrane protein 11	protein-coding	1.5	4.0	11.5	1.5	3.0	8.5
Merged-chr7-110891699-4	chr7	110891250	110892250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194464, intron 15 of 20)	L1MEd|LINE|L1	-13235.0	NR_045267	100504184.0	Mm.441327	NR_045267	ENSMUSG00000087160	Gm16336	-	predicted gene 16336	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28294592-4	chr17	28294096	28295096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 3 of 7)	intron (NM_011145, intron 3 of 7)	-18934.0	NR_028297	72775.0	Mm.201859	NM_028348	ENSMUSG00000007570	Fance	2810451D06Rik|AI415634|AW209126	Fanconi anemia, complementation group E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20302404-4	chr16	20301876	20302876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005767)	promoter-TSS (NM_001005767)	-14.0	NM_001005767	381038.0	Mm.371737	NM_001005767	ENSMUSG00000033918	Parl	D16Ertd607e|PRO2207|PSARL1|PSENIP2|Psarl	presenilin associated, rhomboid-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133967315-4	chr4	133966832	133967832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016957, intron 1 of 5)	CpG	659.0	NM_016957	15331.0	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	11.5	12.5	23.0	13.5	12.5	27.5
Merged-chr13-59770346-4	chr13	59769845	59770845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026921)	promoter-TSS (NM_026921)	379.0	NR_015349	13996.0	Mm.490435	NR_015349		Etohd2	AW491659	ethanol decreased 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116424257-4	chr11	116423761	116424761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9833.0	NM_176902	319370.0	Mm.258466	NM_176902	ENSMUSG00000050628	Ubald2	1110014K08Rik|D030012E24Rik|Fam100b	UBA-like domain containing 2	protein-coding	70.5	132.0	122.5	94.0	206.5	95.0
Merged-chr10-17624350-4	chr10	17623858	17624858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98870.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	1.0	21.0	8.0	1.5	0.5	4.5
Merged-chr2-180126344-3	chr2	180125838	180126838	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144500, intron 1 of 13)	intron (NM_144500, intron 1 of 13)	6972.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	5.0	14.0	4.5	5.5	6.5	5.0
Merged-chr2-27715403-4	chr2	27714900	27715900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	4817.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120348516-4	chr11	120348023	120349023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038126)	promoter-TSS (NR_038126)	-28.0	NM_009609	11465.0	Mm.196173	NM_009609	ENSMUSG00000062825	Actg1	AL023024|Actg|Actl|E51	actin, gamma, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97951301-4	chr3	97950782	97951782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033779, intron 1 of 1)	L1_Mur3|LINE|L1	21109.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102433244-2	chr11	102432744	102433744	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008175, exon 3 of 13)	exon (NM_008175, exon 3 of 13)	2922.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66350407-4	chr9	66349921	66350921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145617)	promoter-TSS (NM_145617)	-29.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12741793-3	chr18	12741302	12742302	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042419, intron 1 of 5)	intron (NM_001042419, intron 1 of 5)	447.0	NM_027687	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61861917-4	chr11	61861418	61862418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6826.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-119483463-4	chr12	119482955	119483955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	40045.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36609142-4	chr15	36608657	36609657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008774)	promoter-TSS (NM_008774)	-184.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-66445614-2	chr8	66445114	66446114	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 6 of 7)	MTEb|LTR|ERVL-MaLR	40916.0	NM_025465	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-13737599-2	chr19	13737099	13738099	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-11509.0	NM_146990	258992.0	Mm.391191	NM_146990	ENSMUSG00000050865	Olfr1494	MOR266-1	olfactory receptor 1494	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-48766755-4	chr2	48766268	48767268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47341.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-61227254-4	chr19	61226743	61227743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009970, intron 2 of 11)	CpG-7695	1175.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	8.5	47.0	39.0	7.0	21.5	20.0
Merged-chr3-89266570-4	chr3	89266058	89267058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026767)	promoter-TSS (NM_026767)	97.0	NM_026767	68563.0	Mm.272927	NM_026767	ENSMUSG00000042737	Dpm3	1110001H19Rik|AV117483	dolichyl-phosphate mannosyltransferase polypeptide 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-96915872-2	chr7	96915372	96916372	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35655.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	0.0	1.0	0.0	3.5	5.0	0.0
Merged-chr9-89224794-4	chr9	89224278	89225278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359993, intron 2 of 2)	(TTTG)n|Simple_repeat|Simple_repeat	13394.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20498851-4	chr16	20498344	20499344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172265)	promoter-TSS (NM_172265)	27.0	NM_172265	224045.0	Mm.233855	NM_172265	ENSMUSG00000003235	Eif2b5	C81315	eukaryotic translation initiation factor 2B, subunit 5 epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24300258-2	chr7	24299758	24300758	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009561)	promoter-TSS (NM_009561)	-709.0	NM_009561	22719.0	Mm.12832	NM_009561	ENSMUSG00000050605	Zfp61	-	zinc finger protein 61	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80710732-4	chr15	80710237	80711237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144812)	promoter-TSS (NM_144812)	-576.0	NM_144812	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121451384-4	chr5	121450863	121451863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026129, intron 1 of 2)	intron (NM_026129, intron 1 of 2)	1111.0	NM_026129	67397.0	Mm.154570	NM_026129	ENSMUSG00000029616	Erp29	1200015M03Rik|2810446M09Rik|AW209030|Erp28|Erp31|PDI-Db	endoplasmic reticulum protein 29	protein-coding	38.0	113.5	68.0	26.0	115.0	71.0
Merged-chr18-56975349-4	chr18	56974850	56975850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029909)	promoter-TSS (NM_029909)	29.0	NM_029909	77422.0	Mm.256874	NM_029909	ENSMUSG00000024592	C330018D20Rik	AU018666	RIKEN cDNA C330018D20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63410689-4	chr14	63410192	63411192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007549, intron 1 of 12)	intron (NM_007549, intron 1 of 12)	6495.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121873347-4	chr14	121872849	121873849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4921.0	NR_131002	78312.0	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	2.5	15.0	10.0	4.5	17.5	4.5
Merged-chr8-120538875-4	chr8	120538358	120539358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_106159)	TTS (NR_106159)	162.0	NR_106159	102466849.0		NR_106159	ENSMUSG00000098280	Mir7687	Gm27573|mmu-mir-7687	microRNA 7687	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24670812-3	chr10	24670309	24671309	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308329, intron 6 of 24)	intron (NM_001308329, intron 6 of 24)	41350.0	NM_001308327	18605.0	Mm.27254	NM_008813	ENSMUSG00000037370	Enpp1	4833416E15Rik|AI428932|C76301|CD203c|E-NPP 1|E-NPP1|Ly-41|M6S1|NPP1|Npps|PC-1|Pca|Pca-1|Pdnp1|ttw|twy	ectonucleotide pyrophosphatase/phosphodiesterase 1	protein-coding	1.5	1.5	3.5	2.5	4.5	1.0
Merged-chr13-58215690-4	chr13	58215189	58216189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152234)	promoter-TSS (NM_152234)	-36.0	NM_026842	56085.0	Mm.182053	NM_026842	ENSMUSG00000005312	Ubqln1	1110046H03Rik|1810030E05Rik|AU019746|C77538|D13Ertd372e|Da41|Dsk2|Plic-1|Plic1|Xdrp1	ubiquilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-92823423-2	chr7	92822923	92823923	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029494, intron 2 of 4)	intron (NM_029494, intron 2 of 4)	50824.0	NM_001355126	74041.0	Mm.26468	NM_028729	ENSMUSG00000030641	Ddias	4632434I11Rik|noxin	DNA damage-induced apoptosis suppressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156450322-2	chr1	156449814	156450814	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_009230, intron 3 of 15)	intron (NM_009230, intron 3 of 15)	24014.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	31.0	86.5	37.5	47.0	148.0	111.0
Merged-chr6-124806157-4	chr6	124805657	124806657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-2504.0	NM_001306051	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83274108-6	chr17	83273475	83274475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58692.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40847400-4	chr10	40846896	40847896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027879, intron 7 of 14)	intron (NM_027879, intron 7 of 14)	35747.0	NM_027879	71713.0	Mm.46063	NM_027879	ENSMUSG00000038446	Cdc40	1200003H23Rik|EHB3|PRP17	cell division cycle 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-96483064-4	chr7	96482560	96483560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 3 of 32)	intron (NM_011858, intron 3 of 32)	-141096.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	24.0	23.0	45.0	22.5	35.5	33.5
Merged-chr6-136654615-4	chr6	136654119	136655119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025806, intron 1 of 10)	intron (NM_025806, intron 1 of 10)	7274.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	96.5	212.0	152.5	60.5	126.0	88.0
Merged-chr18-39021039-4	chr18	39020542	39021542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 1 of 21)	intron (NM_001361073, intron 1 of 21)	27897.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67392347-4	chr18	67391853	67392853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026473, intron 2 of 3)	intron (NM_026473, intron 2 of 3)	1622.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	17.0	62.0	34.5	35.5	52.5	50.5
Merged-chr9-90204248-2	chr9	90203748	90204748	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_194334, exon 13 of 13)	3' UTR (NM_194334, exon 13 of 13)	41270.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0.0	0.0	1.5	0.0	1.5	1.5
Merged-chr2-156393904-4	chr2	156393407	156394407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024329)	promoter-TSS (NR_024329)	-928.0	NR_024329	347740.0	Mm.324242	NR_024329	ENSMUSG00000102869	2900097C17Rik	1810005K14Rik|4930563C06Rik	RIKEN cDNA 2900097C17 gene	ncRNA	27.0	78.0	58.0	29.0	67.5	30.5
Merged-chr14-52009015-4	chr14	52008511	52009511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001253695, exon 3 of 5)	exon (NM_001253695, exon 3 of 5)	5547.0	NM_001253695	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	0.0	0.0	0.5	0.0	1.0	0.0
Merged-chr5-108268820-4	chr5	108268318	108269318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026106)	promoter-TSS (NM_026106)	-79.0	NM_026106	13486.0	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	23.5	52.0	44.5	30.0	77.5	68.0
Merged-chr4-155562242-5	chr4	155561675	155562675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138671)	promoter-TSS (NM_138671)	-206.0	NM_138671	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	38.5	83.5	41.0	17.5	73.0	53.0
Merged-chr10-112163635-4	chr10	112163086	112164086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310675)	promoter-TSS (NM_001310675)	-35.0	NM_001310675	353025.0	Mm.194428	NM_178278	ENSMUSG00000035694	Caps2	D630005B03Rik	calcyphosphine 2	protein-coding	7.5	7.5	1.0	12.0	0.0	1.0
Merged-chr11-31733141-4	chr11	31732635	31733635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61273.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	114.5	273.0	190.5	6.0	10.5	12.5
Merged-chr10-127592626-4	chr10	127592132	127593132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 10 of 88)	intron (NM_008512, intron 10 of 88)	28516.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	53.0	195.0	109.0	81.0	124.0	121.5
Merged-chr8-13287519-4	chr8	13287063	13288063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172282)	promoter-TSS (NM_172282)	-450.0	NM_172282	234076.0	Mm.219813	NM_172282	ENSMUSG00000038497	Tmco3	B230339H12Rik|C87304	transmembrane and coiled-coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-37524765-4	chr17	37524268	37525268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5189.0	NM_001005485	545205.0	Mm.383371	NM_001005485	ENSMUSG00000090675	Olfr111	-	olfactory receptor 111	protein-coding	34.0	72.5	79.5	5.0	33.0	26.0
Merged-chr10-94147900-4	chr10	94147387	94148387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011629)	promoter-TSS (NM_011629)	-44.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	81.0	271.0	218.5	42.0	192.5	132.0
Merged-chr5-45856641-4	chr5	45856110	45857110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172153)	promoter-TSS (NM_172153)	-58.0	NM_172153	209707.0	Mm.71498	NM_172153	ENSMUSG00000015882	Lcorl	Mlr1	ligand dependent nuclear receptor corepressor-like	protein-coding	17.5	30.5	39.0	30.5	63.5	42.5
Merged-chr7-16738354-4	chr7	16737853	16738853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198613)	promoter-TSS (NM_198613)	-91.0	NM_198613	232910.0	Mm.333597	NM_198613	ENSMUSG00000008036	Ap2s1	AI043088	adaptor-related protein complex 2, sigma 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65674772-4	chr17	65674255	65675255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 5 of 6)	intron (NM_133685, intron 5 of 6)	-32551.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93825403-4	chr1	93824888	93825888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001310767, exon 1 of 10)	5' UTR (NM_001310767, exon 1 of 10)	148.0	NM_001310767	98314.0	Mm.383401	NM_178882	ENSMUSG00000073609	D2hgdh	AA408776|AA408778|AI325464	D-2-hydroxyglutarate dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-141056189-4	chr5	141055677	141056677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55581.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-44436740-4	chr17	44436242	44437242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	248170.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83118251-2	chr11	83117751	83118751	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011407, intron 1 of 1)	intron (NM_011407, intron 1 of 1)	1431.0	NM_011407	20555.0	Mm.10948	NM_011407	ENSMUSG00000078763	Slfn1	AV316259	schlafen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30066345-4	chr2	30065884	30066884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204875)	promoter-TSS (NM_001204875)	-90.0	NM_001204875	56086.0	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6705774-4	chr2	6705252	6706252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	15910.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53133624-4	chr4	53133124	53134124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 2 of 49)	intron (NM_013454, intron 2 of 49)	26271.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	23.5	72.5	43.5	33.0	61.5	45.0
Merged-chr11-5505996-4	chr11	5505510	5506510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14631.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	37.0	75.0	92.0	22.5	94.5	73.0
Merged-chr18-50038539-4	chr18	50038047	50039047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360935, intron 1 of 1)	intron (NM_001360935, intron 1 of 1)	7563.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	20.0	60.0	41.0	39.5	58.0	35.0
Merged-chr10-75326775-4	chr10	75326260	75327260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009630, intron 2 of 2)	MIR3|SINE|MIR	1902.0	NM_001331096	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69361497-4	chr12	69360986	69361986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4310.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	14.0	53.0	42.0	27.5	61.5	27.0
Merged-chr18-66410642-4	chr18	66410139	66411139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47965.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33684826-4	chr17	33684341	33685341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145486)	TTS (NM_145486)	617.0	NM_001109913	76936.0	Mm.311439	NM_029804	ENSMUSG00000059208	Hnrnpm	2610023M21Rik|AA409009|Hnrpm|mKIAA4193	heterogeneous nuclear ribonucleoprotein M	protein-coding	37.5	33.0	33.0	11.0	32.5	32.0
Merged-chr3-135212480-4	chr3	135211950	135212950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173762)	promoter-TSS (NM_173762)	-113.0	NM_173762	229841.0	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6450899-4	chr2	6450413	6451413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98177.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70968371-4	chr17	70967857	70968857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22159.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127313025-4	chr10	127312528	127313528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1242.0	NM_001171582	216443.0	Mm.28173	NM_001003913	ENSMUSG00000040354	Mars	Metrs|Mtrns	methionine-tRNA synthetase	protein-coding	38.0	162.5	115.0	47.0	139.5	106.0
Merged-chr3-8991046-4	chr3	8990539	8991539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	13165.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	53.5	143.5	87.0	25.5	71.0	63.5
Merged-chr18-61090852-4	chr18	61090366	61091366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14706.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102407091-1	chr11	102406591	102407591	+	1000.0	f0_balb.idr	intron (NM_026542, intron 1 of 11)	intron (NM_026542, intron 1 of 11)	426.0	NM_026542	68066.0	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-71114078-4	chr12	71113582	71114582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029227, intron 2 of 4)	intron (NM_029227, intron 2 of 4)	2654.0	NM_029227	75266.0	Mm.402075	NM_029227	ENSMUSG00000021078	Tomm20l	4930553D19Rik	translocase of outer mitochondrial membrane 20-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35938947-4	chr16	35938456	35939456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013371)	promoter-TSS (NM_001013371)	71.0	NM_001013371	209200.0	Mm.390852	NM_001013371	ENSMUSG00000049502	Dtx3l	AU042200|BC023741	deltex 3-like, E3 ubiquitin ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-87415568-4	chr12	87415072	87416072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22185.0	NR_037228	100526546.0		NR_037228	ENSMUSG00000105428	Mir3068	mir-3068|mmu-mir-3068	microRNA 3068	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-84086751-2	chr14	84086251	84087251	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	-11461.0	NR_153783	102635012.0	Mm.399509	NR_153783	ENSMUSG00000115043	Gm32455	-	predicted gene, 32455	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-100881857-4	chr10	100881357	100882357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-140222.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71358256-2	chr8	71357756	71358756	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015742, intron 37 of 39)	intron (NM_015742, intron 37 of 39)	-8592.0	NM_001145780	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr5-3499940-2	chr5	3499440	3500440	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	Lx10|LINE|L1	-43893.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5635192-4	chr13	5634696	5635696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	222896.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.5	1.5	0.0	0.0	1.5
Merged-chr10-122570055-4	chr10	122569601	122570601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040616)	promoter-TSS (NR_040616)	-210.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	54.0	90.5	76.5	29.5	68.5	89.0
Merged-chr13-104178381-4	chr13	104177870	104178870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361539)	promoter-TSS (NM_001361539)	96.0	NM_025879	66975.0	Mm.272541	NM_025879	ENSMUSG00000021711	Trappc13	2410002O22Rik|2610524F24Rik|AI451892|AU017229	trafficking protein particle complex 13	protein-coding	6.5	8.0	2.0	6.5	8.0	2.0
Merged-chr3-121570879-4	chr3	121570340	121571340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38496.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101851919-4	chr7	101851413	101852413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303239, intron 2 of 5)	intron (NM_001303239, intron 2 of 5)	5277.0	NM_001303239	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80403019-4	chr7	80402521	80403521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011046)	promoter-TSS (NM_011046)	-209.0	NM_011046	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	59.5	71.0	68.0	62.5	64.0	68.5
Merged-chr8-84984822-4	chr8	84984263	84985263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5832.0	NM_133255	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	77.0	141.5	106.5	101.5	164.5	116.5
Merged-chr13-58999292-4	chr13	58998778	58999778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	191581.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	5.5	27.5	10.0	18.5	28.0	14.5
Merged-chr16-13818697-4	chr16	13818216	13819216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010946)	promoter-TSS (NM_010946)	-535.0	NM_010946	18203.0	Mm.380410	NM_010946	ENSMUSG00000022681	Ntan1	PNAA|PNAD	N-terminal Asn amidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25984303-4	chr15	25983793	25984793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144523)	promoter-TSS (NM_144523)	-73.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119809123-4	chr13	119808647	119809647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-18025.0	NM_001302550	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107810591-4	chr13	107810079	107811079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	79485.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-13590279-4	chr13	13589801	13590801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010748)	promoter-TSS (NM_010748)	-108.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-9123666-2	chr15	9123166	9124166	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 5 of 9)	intron (NM_013787, intron 5 of 9)	16788.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96576857-4	chr3	96576318	96577318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10017.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	98.0	298.5	160.5	154.0	199.0	180.5
Merged-chr1-72719170-2	chr1	72718670	72719670	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7910.0	NM_009084	19981.0	Mm.21529	NM_009084	ENSMUSG00000046330	Rpl37a	-	ribosomal protein L37a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-91344862-4	chr8	91344363	91345363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011936, intron 1 of 8)	intron (NM_011936, intron 1 of 8)	31338.0	NM_011936	26383.0	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	7.0	8.0	18.5	3.5	21.5	16.5
Merged-chr6-113309860-2	chr6	113309360	113310360	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001282126, exon 2 of 13)	exon (NM_001282126, exon 2 of 13)	2723.0	NM_001282126	78783.0	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84799342-4	chr2	84798828	84799828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019949, intron 1 of 3)	intron (NM_019949, intron 1 of 3)	500.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124309128-4	chr6	124308603	124309603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_053094, exon 4 of 17)	exon (NM_053094, exon 4 of 17)	4452.0	NM_053094	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119897218-4	chr2	119896727	119897727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164274)	promoter-TSS (NM_001164274)	-1.0	NM_001164274	29808.0	Mm.87532	NM_013720	ENSMUSG00000033943	Mga	AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5	MAX gene associated	protein-coding	14.5	10.5	16.5	5.0	25.0	21.5
Merged-chr6-128845516-4	chr6	128845012	128846012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19197.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-124712787-2	chr4	124712287	124713287	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2074.0	NM_029157	75062.0	Mm.25779	NM_029157	ENSMUSG00000028902	Sf3a3	4930512K19Rik|60kDa	splicing factor 3a, subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-123076447-4	chr10	123075940	123076940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153395)	promoter-TSS (NM_153395)	65.0	NM_001163024	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	9.0	25.5	14.0	9.5	25.5	14.5
Merged-chr16-50756886-4	chr16	50756383	50757383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24110.0	NR_028300	68190.0	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-28637215-1	chr12	28636715	28637715	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-1262.0	NM_011300	20115.0	Mm.279839	NM_011300	ENSMUSG00000061477	Rps7	Mtu|Rps7A|S7	ribosomal protein S7	protein-coding	9.5	5.5	5.0	0.5	5.5	2.5
Merged-chr18-12733518-2	chr18	12733018	12734018	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028341, intron 11 of 13)	intron (NM_028341, intron 11 of 13)	-7837.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-90224236-4	chr15	90223731	90224731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033441)	promoter-TSS (NM_001033441)	-80.0	NM_001033441	380959.0	Mm.17853	NM_001033441	ENSMUSG00000075470	Alg10b	AA469671|AU045404|AW123895|C85569|Deaf1|Gm917|nse5	asparagine-linked glycosylation 10B (alpha-1,2-glucosyltransferase)	protein-coding	2.5	4.0	3.0	0.0	1.0	7.0
Merged-chr1-171017945-4	chr1	171017376	171018376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1050.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141414195-4	chr7	141413698	141414698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172116)	promoter-TSS (NM_172116)	-73.0	NM_172116	213350.0	Mm.290953	NM_172116	ENSMUSG00000051007	Gatd1	BC023835|D230016J19Rik|Pddc1	glutamine amidotransferase like class 1 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31229558-2	chr16	31229058	31230058	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-28320.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51455597-3	chr10	51455092	51456092	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25020.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128493902-4	chr10	128493411	128494411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010860)	promoter-TSS (NM_010860)	-25.0	NM_010860	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78574689-7	chr10	78574214	78575214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359303)	promoter-TSS (NM_001359303)	201.0	NM_001359301	216136.0	Mm.2644	NM_173751	ENSMUSG00000032763	Ilvbl	5830463I21|AI415009	ilvB (bacterial acetolactate synthase)-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96627390-4	chr15	96626862	96627862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166458, intron 1 of 15)	intron (NM_001166458, intron 1 of 15)	14600.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89180840-4	chr15	89180342	89181342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138749)	promoter-TSS (NM_138749)	-54.0	NM_138749	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63132486-4	chr14	63131977	63132977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	10015.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52959243-4	chr2	52958739	52959739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	101371.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77962874-4	chr10	77962346	77963346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 4 of 33)	L1MDa|LINE|L1	7026.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119440592-4	chr8	119440094	119441094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027950, intron 1 of 5)	intron (NM_027950, intron 1 of 5)	3432.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-16932320-4	chr11	16931819	16932819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18963.0	NR_110421	72735.0	Mm.268598	NR_015469		Eldr	2810442I21Rik|4930500E12Rik|Fabl	Egfr long non-coding downstream RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90480460-2	chr2	90479960	90480960	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	MIRb|SINE|MIR	-1286.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4756495-4	chr19	4755984	4756984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025717)	promoter-TSS (NM_025717)	-41.0	NM_025717	66704.0	Mm.396734	NM_025717	ENSMUSG00000033760	Rbm4b	4921506I22Rik|AI504630|AI506404|Lark2|Neosin	RNA binding motif protein 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135206433-4	chr4	135205928	135206928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	66332.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7482843-1	chr19	7482343	7483343	+	1000.0	f0_c57.idr	intron (NM_001003934, intron 1 of 8)	CpG	448.0	NM_001271486	20168.0	Mm.246990	NM_053076	ENSMUSG00000024758	Rtn3	RTN3-A1	reticulon 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124745168-2	chr6	124744668	124745668	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007881, exon 7 of 10)	exon (NM_007881, exon 7 of 10)	-4089.0	NM_013535	14790.0	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99030055-7	chr15	99029579	99030579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009448, exon 1 of 4)	5' UTR (NM_009448, exon 1 of 4)	188.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-76242216-4	chr18	76241712	76242712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010754, intron 1 of 10)	G-rich|Low_complexity|Low_complexity	511.0	NM_010754	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	5.5	8.0	4.0	3.5	10.5	3.0
Merged-chr7-135651910-4	chr7	135651395	135652395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316681)	promoter-TSS (NM_001316681)	-4.0	NM_001316681	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91562184-4	chr16	91561676	91562676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008338, intron 6 of 6)	intron (NM_008338, intron 6 of 6)	15082.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47090752-4	chr19	47090254	47091254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011053)	promoter-TSS (NM_011053)	-12.0	NM_011053	18572.0	Mm.41166	NM_011053	ENSMUSG00000025047	Pdcd11	1110021I22Rik|ALG-4|Pdcd7|mKIAA0185	programmed cell death 11	protein-coding	15.0	44.0	42.5	15.0	66.0	43.5
Merged-chr1-127225275-4	chr1	127224765	127225765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	20279.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	21.0	38.5	36.0	5.5	15.0	16.5
Merged-chr15-25404022-4	chr15	25403518	25404518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	9746.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111437348-4	chr12	111436860	111437860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5301.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91265743-2	chr2	91265298	91266298	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023854, intron 2 of 15)	intron (NM_023854, intron 2 of 15)	683.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	7.0	9.5	14.0	11.0	32.0	20.0
Merged-chr11-49845374-4	chr11	49844886	49845886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1365.0	NM_001163671	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43667239-5	chr7	43666771	43667771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAT)n|Simple_repeat|Simple_repeat	-4760.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93914449-4	chr16	93913989	93914989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15078.0	NM_001165925	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	217.5	460.5	348.0	100.5	291.5	200.5
Merged-chr17-88131479-4	chr17	88130978	88131978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001190356)	TTS (NM_001190356)	5966.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132437882-2	chr4	132437382	132438382	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15436.0	NM_175306	100169.0	Mm.158361	NM_175306	ENSMUSG00000066043	Phactr4	3110001B12Rik|AI527228|AW495572|C330013F19Rik|N28169|mKIAA4120	phosphatase and actin regulator 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-113848845-6	chr2	113848338	113849338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181416)	promoter-TSS (NM_181416)	-177.0	NM_181416	228482.0	Mm.45753	NM_181416	ENSMUSG00000041219	Arhgap11a	6530401L14Rik|mKIAA0013	Rho GTPase activating protein 11A	protein-coding	170.0	376.5	316.0	143.5	292.5	240.5
Merged-chr17-43016519-4	chr17	43016029	43017029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178589)	promoter-TSS (NM_178589)	-26.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	32.5	85.0	65.5	33.0	51.5	92.0
Merged-chr11-69095871-4	chr11	69095336	69096336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3113.0	NM_011065	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127270482-4	chr7	127270010	127271010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3549.0	NM_009266	20768.0	Mm.20294	NM_009266	ENSMUSG00000049091	Sephs2	Sps2|Ysg3	selenophosphate synthetase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135691497-4	chr3	135690999	135691999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008689)	promoter-TSS (NM_008689)	48.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58135144-4	chr15	58134642	58135642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027435)	promoter-TSS (NM_027435)	-60.0	NM_027435	70472.0	Mm.221758	NM_027435	ENSMUSG00000022360	Atad2	2610509G12Rik	ATPase family, AAA domain containing 2	protein-coding	80.5	204.0	160.5	60.0	172.0	120.0
Merged-chr17-28800883-4	chr17	28800310	28801310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081315)	promoter-TSS (NM_001081315)	-316.0	NM_001081315	268936.0	Mm.291877	NM_199061	ENSMUSG00000063952	Brpf3	AI413466|AW493400|mKIAA1286	bromodomain and PHD finger containing, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26663108-4	chr17	26662591	26663591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13305.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79857697-4	chr10	79857260	79858260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077363, intron 2 of 13)	intron (NM_001077363, intron 2 of 13)	-2789.0	NR_029447	414101.0	Mm.401339	NR_029447	ENSMUSG00000091994	E130317F20Rik	-	RIKEN cDNA E130317F20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-91000133-4	chr5	90999621	91000621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026788, intron 6 of 7)	intron (NM_026788, intron 6 of 7)	-27396.0	NM_053087	71920.0	Mm.197319	NM_053087	ENSMUSG00000035020	Epgn	2310069M11Rik|epigen	epithelial mitogen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137825271-4	chr5	137824757	137825757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153510, intron 4 of 6)	intron (NM_153510, intron 4 of 6)	11021.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70969960-4	chr12	70969461	70970461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4662.0	NM_001310595	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95303517-4	chr4	95303010	95304010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-251288.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	26.0	45.5	36.5	8.5	37.5	19.5
Merged-chr6-17542633-3	chr6	17542143	17543143	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008591, intron 12 of 21)	intron (NM_008591, intron 12 of 21)	78686.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	6.5	3.5	3.5	10.0	1.5	7.5
Merged-chr5-103691712-4	chr5	103691207	103692207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35975.0	NM_001163550	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22124424-3	chr8	22123937	22124937	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177898, intron 1 of 19)	intron (NM_177898, intron 1 of 19)	630.0	NM_177898	330721.0	Mm.113940	NM_177898	ENSMUSG00000037738	Nek5	6530411J22|BB049667	NIMA (never in mitosis gene a)-related expressed kinase 5	protein-coding	7.0	0.0	2.5	0.0	0.5	0.0
Merged-chr1-52500027-4	chr1	52499524	52500524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008667, intron 1 of 7)	intron (NM_008667, intron 1 of 7)	424.0	NM_008667	17936.0	Mm.25903	NM_008667	ENSMUSG00000002881	Nab1	-	Ngfi-A binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83215139-4	chr17	83214635	83215635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134117)	promoter-TSS (NM_134117)	-148.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-36094951-5	chr8	36094418	36095418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172911)	promoter-TSS (NM_172911)	90.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	6.5	13.0	4.0	2.5	5.5	21.5
Merged-chr15-73148919-4	chr15	73148416	73149416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	36031.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107895840-4	chr3	107895358	107896358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010360)	promoter-TSS (NM_010360)	4.0	NM_010360	14866.0	Mm.282351	NM_010360	ENSMUSG00000004032	Gstm5	-	glutathione S-transferase, mu 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88685399-4	chr3	88684891	88685891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028814)	promoter-TSS (NM_028814)	-396.0	NM_028814	74200.0	Mm.251800	NM_028814	ENSMUSG00000028060	2810403A07Rik	A430106P18Rik|AI256352|AI451678|Blom7|Khdc4|Kiaa0907	RIKEN cDNA 2810403A07 gene	protein-coding	30.0	89.0	89.5	44.5	96.0	74.5
Merged-chr4-4771871-2	chr4	4771371	4772371	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177730, intron 3 of 4)	B3A|SINE|B2	21435.0	NM_177730	242291.0	Mm.218889	NM_177730	ENSMUSG00000066324	Impad1	1110001C20Rik|AA408880|AI451589|AL022796|B230207P20|Jaws|gPAPP	inositol monophosphatase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70999750-4	chr12	70999249	71000249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045055, intron 3 of 3)	intron (NR_045055, intron 3 of 3)	16074.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37963904-2	chr19	37963412	37964412	+	1000.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 19 of 53)	intron (NM_001302140, intron 19 of 53)	79665.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	97.0	160.5	170.0	86.5	192.0	135.0
Merged-chr2-14234211-4	chr2	14233719	14234719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 1 of 29)	LTR16C|LTR|ERVL	4805.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91412649-2	chr1	91412149	91413149	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360900, intron 3 of 3)	CpG	573.0	NM_019479	55927.0	Mm.280029	NM_019479	ENSMUSG00000067071	Hes6	AI326893|bHLHb41	hairy and enhancer of split 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139775735-4	chr5	139775244	139776244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026748)	promoter-TSS (NM_026748)	-66.0	NM_026748	68510.0	Mm.292942	NM_026748	ENSMUSG00000029547	Ints1	1110015K06Rik	integrator complex subunit 1	protein-coding	11.5	10.5	35.0	28.0	30.0	19.5
Merged-chr10-80755083-4	chr10	80754580	80755580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199322)	promoter-TSS (NM_199322)	-123.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-50128234-4	chr18	50127718	50128718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008292)	promoter-TSS (NM_008292)	17.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124612495-4	chr2	124612044	124613044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	2248.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87488106-4	chr3	87487567	87488567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113238, intron 11 of 11)	intron (NM_001113238, intron 11 of 11)	-37511.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	39.5	83.5	46.0	22.0	54.0	61.5
Merged-chr11-3199713-4	chr11	3199198	3200198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2655.0	NM_001166548	74203.0	Mm.255649	NM_023743	ENSMUSG00000020454	Eif4enif1	2610509L04Rik|A930019J01Rik|AA410001|AU021239|Clast4|D11Ertd166e	eukaryotic translation initiation factor 4E nuclear import factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49857723-4	chr16	49857248	49858248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 1 of 9)	intron (NM_010581, intron 1 of 9)	2094.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100545091-2	chr11	100544591	100545591	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028918)	promoter-TSS (NM_028918)	-541.0	NM_028918	74407.0	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118427570-2	chr11	118427070	118428070	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204129)	promoter-TSS (NM_001204129)	-887.0	NM_001204129	56745.0	Mm.23845	NM_019959	ENSMUSG00000017446	C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46306169-2	chr19	46305701	46306701	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NR_152247)	promoter-TSS (NR_152247)	271.0	NM_001177370	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	32.5	89.0	43.0	17.0	59.0	28.0
Merged-chr12-84192517-4	chr12	84192078	84193078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	1437.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60779265-2	chr11	60778765	60779765	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175491, exon 1 of 1)	exon (NM_175491, exon 1 of 1)	1740.0	NM_175491	237782.0	Mm.57726	NM_175491	ENSMUSG00000049323	Smcr8	2310076G09Rik|AI642055|D030073L15Rik	Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-22058720-4	chr10	22058223	22059223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	9356.0	NM_053264	114671.0	Mm.288194	NM_053264	ENSMUSG00000069712	4930444G20Rik	-	RIKEN cDNA 4930444G20 gene	protein-coding	38.5	63.5	28.5	5.5	7.5	4.0
Merged-chr2-103970114-4	chr2	103969629	103970629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142335)	promoter-TSS (NM_001142335)	-158.0	NM_008505	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	53.0	79.0	69.5	26.0	76.0	53.0
Merged-chr4-67447994-3	chr4	67447475	67448475	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	620424.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71209936-1	chr17	71209436	71210436	+	1000.0	f1_balb.idr	intron (NM_001164885, intron 1 of 19)	intron (NM_001164885, intron 1 of 19)	5282.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	3.0	8.5	11.5	9.5	26.0	9.0
Merged-chr16-31946652-2	chr16	31946152	31947152	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_027897)	TTS (NR_027897)	1869.0	NR_027897	106264.0	Mm.347369	NM_025320	ENSMUSG00000107002	0610012G03Rik	AI839730	RIKEN cDNA 0610012G03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56801476-4	chr19	56800979	56801979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170757, intron 6 of 14)	intron (NM_170757, intron 6 of 14)	12204.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70599663-4	chr14	70599144	70600144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194345, intron 1 of 16)	CpG	191.0	NM_194345	239170.0	Mm.247582	NM_194345	ENSMUSG00000022095	Fam160b2	G430067P06Rik|Rai16	family with sequence similarity 160, member B2	protein-coding	32.0	121.5	103.0	25.0	110.5	78.5
Merged-chr11-99189358-4	chr11	99188853	99189853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34276.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	34.0	72.0	76.0	43.0	85.0	53.0
Merged-chr12-75308637-2	chr12	75308137	75309137	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_023275, exon 1 of 5)	5' UTR (NM_023275, exon 1 of 5)	324.0	NM_023275	80837.0	Mm.27467	NM_023275	ENSMUSG00000046768	Rhoj	1110005O19Rik|AW210585|Arhj|TC10L|TCL	ras homolog family member J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79512382-2	chr15	79511882	79512882	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4026.0	NM_134090	105785.0	Mm.298199	NM_134090	ENSMUSG00000010830	Kdelr3	AI173274	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17132433-4	chr16	17131925	17132925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022324)	promoter-TSS (NM_022324)	-42.0	NM_022324	64136.0	Mm.30222	NM_022324	ENSMUSG00000022769	Sdf2l1	-	stromal cell-derived factor 2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-11281014-6	chr10	11280668	11281668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027968)	promoter-TSS (NM_027968)	-162.0	NM_027968	71865.0	Mm.276229	NM_027968	ENSMUSG00000047648	Fbxo30	1700026A16Rik|MUSA1	F-box protein 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90284554-4	chr16	90284039	90285039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178923)	promoter-TSS (NM_178923)	-36.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171326816-3	chr1	171326303	171327303	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2005.0	NM_001357550	21945.0	Mm.270139	NM_011615	ENSMUSG00000013973	Dedd	CASP8IP1|DEFT|Dedpro1|FLDED1|KE05	death effector domain-containing	protein-coding	18.0	44.5	15.5	1.0	3.5	4.0
Merged-chr1-171380053-4	chr1	171379532	171380532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122680, intron 1 of 7)	intron (NM_001122680, intron 1 of 7)	-8928.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	25.5	28.5	33.5	27.0	26.5	32.5
Merged-chr17-11353000-3	chr17	11352488	11353488	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317726, intron 4 of 6)	MLTR25A|LTR|ERVK	512629.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101699193-2	chr13	101698693	101699693	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 7 of 15)	intron (NM_001077495, intron 7 of 15)	-6563.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-37441791-1	chr6	37441291	37442291	+	1000.0	f0_balb.idr	exon (NM_178661, exon 1 of 12)	exon (NM_178661, exon 1 of 12)	357.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-34502770-4	chr14	34502293	34503293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009758)	promoter-TSS (NM_009758)	-247.0	NM_009758	12166.0	Mm.237825	NM_009758	ENSMUSG00000021796	Bmpr1a	1110037I22Rik|ALK-3|ALK3|AU045487|BMPR-1A|BMPR-IA|Bmpr|SKR5	bone morphogenetic protein receptor, type 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121236772-1	chr11	121236272	121237272	+	1000.0	f0_c57.idr	promoter-TSS (NM_026272)	promoter-TSS (NM_026272)	-464.0	NM_026272	67608.0	Mm.291832	NM_026272	ENSMUSG00000000056	Narf	4430402O11Rik	nuclear prelamin A recognition factor	protein-coding	22.5	29.5	32.0	22.5	34.5	33.0
Merged-chr4-53074058-2	chr4	53073558	53074558	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 23 of 49)	intron (NM_013454, intron 23 of 49)	62178.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-131904733-2	chr4	131904233	131905233	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_102393, intron 4 of 4)	RSINE1|SINE|B4	15296.0	NR_102394	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-24600985-4	chr12	24600411	24601411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145890, intron 6 of 13)	intron (NM_145890, intron 6 of 13)	20192.0	NM_145890	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	0.0	2.0	3.0	0.0	1.5	0.5
Merged-chr1-152902872-4	chr1	152902364	152903364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359257)	promoter-TSS (NM_001359257)	-218.0	NM_001005507	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-130717513-4	chr1	130717007	130718007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178691, exon 1 of 2)	exon (NM_178691, exon 1 of 2)	180.0	NM_178691	226418.0	Mm.106553	NM_178691	ENSMUSG00000046404	Yod1	6330564D18Rik|9930028C20Rik|Hshin7	YOD1 deubiquitinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136142884-4	chr1	136142372	136143372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	MIR|SINE|MIR	11482.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-93997182-4	chr13	93996705	93997705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60591.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64811148-4	chr9	64810666	64811666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162917, intron 1 of 34)	CpG	155.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152547167-2	chr1	152546667	152547667	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 8 of 17)	MTEb|LTR|ERVL-MaLR	78050.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78983133-4	chr11	78982607	78983607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010708, intron 1 of 10)	intron (NM_010708, intron 1 of 10)	1817.0	NM_001159301	16859.0	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121446025-4	chr10	121445525	121446525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	30225.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	13.5	22.0	23.0	16.5	41.5	13.0
Merged-chr7-44467975-4	chr7	44467474	44468474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205070)	promoter-TSS (NM_001205070)	-6.0	NM_001360604	66124.0	Mm.358691	NM_025368	ENSMUSG00000038695	Josd2	1110007C05Rik	Josephin domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84935881-4	chr1	84935373	84936373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027921)	promoter-TSS (NM_027921)	-790.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146792347-4	chr5	146791863	146792863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	2593.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	27.5	55.0	42.0	24.5	68.0	44.0
Merged-chr2-120093402-2	chr2	120092902	120093902	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 5 of 5)	B4A|SINE|B4	59969.0	NM_145378	211429.0	Mm.41467	NM_145378	ENSMUSG00000098488	Pla2g4b	A030011C02Rik|Gm1013|cPLA2-beta	phospholipase A2, group IVB (cytosolic)	protein-coding	0.0	1.0	0.0	1.0	0.0	0.0
Merged-chr18-34777542-6	chr18	34777071	34778071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081256, intron 1 of 23)	CpG	563.0	NM_001081256	277250.0	Mm.277906	NM_029518	ENSMUSG00000038773	Kdm3b	5830462I21Rik|JHDM2B|Jmjd1b|mKIAA1082	KDM3B lysine (K)-specific demethylase 3B	protein-coding	62.0	174.5	150.5	63.5	171.0	150.5
Merged-chr2-126934238-4	chr2	126933722	126934722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023220)	promoter-TSS (NM_023220)	-987.0	NM_023220	66552.0	Mm.269928	NM_023220	ENSMUSG00000027366	Sppl2a	2010106G01Rik|C130089K23Rik	signal peptide peptidase like 2A	protein-coding	98.0	292.0	145.0	124.5	296.0	183.5
Merged-chr12-83487830-4	chr12	83487327	83488327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001267626)	promoter-TSS (NM_001267626)	-91.0	NM_058212	70127.0	Mm.151308	NM_058212	ENSMUSG00000021221	Dpf3	2810403B03Rik|6530402L11Rik|BAF45C|C78788|CERD4|cer-d4	D4, zinc and double PHD fingers, family 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-105126402-4	chr11	105125900	105126900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172567)	promoter-TSS (NM_172567)	-25.0	NM_172567	52686.0	Mm.270091	NM_172567	ENSMUSG00000020691	Mettl2	2810438F06Rik|AW493404|C130031G21Rik|D11Ertd768e|METL|PSENIP1	methyltransferase like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-9879693-4	chr2	9879156	9880156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1056.0	NM_001355112	14462.0	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91869806-4	chr16	91869320	91870320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	61810.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	15.5	62.5	37.0	21.5	53.0	35.5
Merged-chr4-126753607-4	chr4	126753177	126754177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011986)	promoter-TSS (NM_011986)	88.0	NM_001355412	26562.0	Mm.206206	NM_011986	ENSMUSG00000028833	Ncdn	AU042419|MMS10-AE|Ms10ae|mKIAA0607|norbin	neurochondrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120121675-2	chr1	120121175	120122175	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007830)	promoter-TSS (NM_007830)	488.0	NM_001172074	73103.0	Mm.271602	NM_028439	ENSMUSG00000026388	3110009E18Rik	-	RIKEN cDNA 3110009E18 gene	protein-coding	116.0	193.5	169.5	96.5	209.0	114.0
Merged-chr10-30678285-4	chr10	30677776	30678776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 9 of 14)	intron (NM_001358842, intron 9 of 14)	-22409.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135602464-4	chr7	135601943	135602943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316680, intron 2 of 20)	intron (NM_001316680, intron 2 of 20)	-3385.0	NM_001316679	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-1380-1	chr4	880	1880	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-3170703.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97932373-4	chr3	97931872	97932872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033779, intron 1 of 1)	intron (NM_001033779, intron 1 of 1)	2199.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52572126-4	chr13	52571592	52572592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046069, intron 1 of 3)	intron (NR_046069, intron 1 of 3)	1133.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	5.0	14.5	13.5	15.5	16.5	14.5
Merged-chr15-86204128-4	chr15	86203661	86204661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10298.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100496487-2	chr7	100495987	100496987	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011671, intron 2 of 7)	intron (NM_011671, intron 2 of 7)	3129.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	19.0	34.5	27.0	15.0	73.5	33.5
Merged-chr13-112386717-4	chr13	112386202	112387202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77368.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20736029-4	chr18	20735548	20736548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	10356.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94312787-4	chr16	94312283	94313283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139145, intron 1 of 10)	intron (NM_139145, intron 1 of 10)	780.0	NM_139145	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-76974731-5	chr5	76974323	76975323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025691, exon 1 of 19)	exon (NM_025691, exon 1 of 19)	122.0	NM_025691	66661.0	Mm.296976	NM_025691	ENSMUSG00000036323	Srp72	5730576P14Rik|72kDa|AI132477|BC019196|C77589	signal recognition particle 72	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117124898-4	chr4	117124422	117125422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_024078, intron 1 of 6)	intron (NR_024078, intron 1 of 6)	803.0	NR_024078	78611.0	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	105.5	252.5	227.0	115.0	347.0	232.0
Merged-chr2-164939254-2	chr2	164938754	164939754	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-8965.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65541858-4	chr9	65541360	65542360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38227.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30651633-4	chr5	30651130	30652130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175675, intron 1 of 5)	intron (NM_175675, intron 1 of 5)	3691.0	NM_175675	74919.0	Mm.247985	NM_175675	ENSMUSG00000029175	Slc35f6	4930471M23Rik|5730478O19Rik|ANT2BP|P40|Tango9	solute carrier family 35, member F6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21783395-4	chr13	21782893	21783893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178207)	promoter-TSS (NM_178207)	4.0	NM_178207	319153.0	Mm.390558	NM_178207	ENSMUSG00000101972	Hist1h3i	H3-H	histone cluster 1, H3i	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-52133814-4	chr14	52133306	52134306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023879, exon 10 of 25)	exon (NM_023879, exon 10 of 25)	22903.0	NM_023879	77945.0	Mm.21662	NM_023879	ENSMUSG00000057132	Rpgrip1	0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding	6.0	12.0	24.5	0.5	21.5	14.0
Merged-chr13-64432791-1	chr13	64432291	64433291	+	1000.0	f0_c57.idr	intron (NM_053180, intron 1 of 7)	CpG	238.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	32.0	92.0	58.5	43.5	119.5	40.5
Merged-chr3-9947885-4	chr3	9947383	9948383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64702.0	NM_001272097	16592.0	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3297806-4	chr12	3297266	3298266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 1 of 5)	B1_Mm|SINE|Alu	12203.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61024917-4	chr9	61024410	61025410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7841.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109118065-4	chr4	109117550	109118550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134791)	promoter-TSS (NM_001134791)	-14.0	NM_001134791	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89374055-4	chr15	89373523	89374523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111288)	promoter-TSS (NM_001111288)	-205.0	NM_001111288	100126824.0	Mm.287977	NM_001111288	ENSMUSG00000091780	Sco2	-	SCO2 cytochrome c oxidase assembly protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-15428103-4	chr3	15427582	15428582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1655.0	NM_001002898	320832.0	Mm.330924	NM_178792	ENSMUSG00000095788	Sirpb1a	9930027N05Rik|SIRP-beta|Sirpb|Sirpb1	signal-regulatory protein beta 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-9945345-4	chr1	9944852	9945852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1234.0	NR_024067	73824.0	Mm.28311	NR_024067	ENSMUSG00000098234	Snhg6	1110008H02Rik	small nucleolar RNA host gene 6	ncRNA	34.5	39.5	40.5	26.0	47.0	50.5
Merged-chr8-117498454-6	chr8	117498001	117499001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 1 of 32)	CpG	226.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36985810-4	chr16	36985317	36986317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358217, intron 1 of 3)	ORR1D1|LTR|ERVL-MaLR	4650.0	NM_001358217	207215.0	Mm.211899	NM_001037321	ENSMUSG00000047746	Fbxo40	9830003A13Rik|mKIAA1195	F-box protein 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180365327-4	chr1	180364850	180365850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-34801.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20742471-4	chr11	20741976	20742976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290545)	promoter-TSS (NM_001290545)	-920.0	NM_181411	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	99.0	211.0	180.5	81.0	199.0	224.0
Merged-chr7-99182172-2	chr7	99181652	99182652	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026384, intron 1 of 7)	PB1D7|SINE|Alu	561.0	NM_026384	67800.0	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	0.0	0.0	0.0	3.0	0.5	0.0
Merged-chr11-82045527-4	chr11	82045045	82046045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013654)	promoter-TSS (NM_013654)	-167.0	NM_013654	20306.0	Mm.341574	NM_013654	ENSMUSG00000035373	Ccl7	MCP-3|Scya7|fic|marc|mcp3	chemokine (C-C motif) ligand 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120746899-2	chr8	120746399	120747399	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301811, intron 4 of 8)	intron (NM_001301811, intron 4 of 8)	8260.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6922653-2	chr19	6922153	6923153	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007953)	promoter-TSS (NM_007953)	-845.0	NM_007953	26379.0	Mm.386776	NM_007953	ENSMUSG00000024955	Esrra	ERRalpha|Err1|Estrra|Nr3b1	estrogen related receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-28840439-4	chr2	28839975	28840975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166033)	promoter-TSS (NM_001166033)	69.0	NM_001033294	227674.0	Mm.44179	NM_001033294	ENSMUSG00000026806	Ddx31	5830444G11Rik|Gm997	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26483740-4	chr2	26483214	26484214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 4 of 33)	intron (NM_008714, intron 4 of 33)	-13595.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-85395703-4	chr17	85395204	85396204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028576, intron 6 of 10)	intron (NM_028576, intron 6 of 10)	222692.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-56178743-4	chr13	56178236	56179236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001168615, exon 1 of 3)	5' UTR (NM_001168615, exon 1 of 3)	149.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	96.0	256.5	139.5	68.5	205.5	173.5
Merged-chr18-36471721-4	chr18	36471242	36472242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-17247.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	78.0	140.5	107.0	65.0	170.0	115.5
Merged-chr4-116708460-4	chr4	116707962	116708962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025962)	promoter-TSS (NM_025962)	-77.0	NM_025962	67096.0	Mm.252785	NM_025962	ENSMUSG00000028690	Mmachc	1810037K07Rik|CblC	methylmalonic aciduria cblC type, with homocystinuria	protein-coding	11.5	7.5	5.0	7.5	4.5	10.5
Merged-chr9-56257491-2	chr9	56256991	56257991	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172924, intron 4 of 6)	intron (NM_172924, intron 4 of 6)	-96421.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29492937-4	chr17	29492434	29493434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008842, intron 4 of 5)	intron (NM_008842, intron 4 of 5)	1889.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	75.0	161.0	111.0	51.5	159.0	115.5
Merged-chr12-78861676-4	chr12	78861189	78862189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026114)	promoter-TSS (NM_026114)	-51.0	NM_023721	73834.0	Mm.311549	NM_023721	ENSMUSG00000021114	Atp6v1d	1110004P10Rik|Atp6m|VATD|Vma8	ATPase, H+ transporting, lysosomal V1 subunit D	protein-coding	214.0	471.5	313.0	209.5	502.5	349.5
Merged-chr4-149340910-4	chr4	149340421	149341421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022022, intron 22 of 26)	intron (NM_022022, intron 22 of 26)	6282.0	NR_131918	74310.0	Mm.440455	NR_131918	ENSMUSG00000085286	Ube4bos3	1700121F15Rik	ubiquitination factor E4B, opposite strand 3	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93161698-8	chr10	93161149	93162149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146239, intron 1 of 16)	CpG	773.0	NM_146239	237459.0	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding	53.0	119.5	88.0	34.0	70.5	59.0
Merged-chr15-66729647-4	chr15	66729141	66730141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009375, exon 27 of 48)	exon (NM_009375, exon 27 of 48)	58871.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	7.0	11.5	11.0	10.5	21.0	11.5
Merged-chr15-98763262-4	chr15	98762766	98763766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007478)	promoter-TSS (NM_007478)	-148.0	NM_007478	11842.0	Mm.221298	NM_007478	ENSMUSG00000051853	Arf3	5430400P17Rik|AI854770	ADP-ribosylation factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-124751427-4	chr4	124750858	124751858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151694)	promoter-TSS (NR_151694)	-4.0	NR_151694	102634646.0	Mm.348378	NR_151694		Gm12915	-	predicted gene 12915	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-72308297-2	chr7	72307797	72308797	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1702.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37322947-4	chr13	37322466	37323466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22379.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	4.0	0.5	1.0	0.0	2.5	0.0
Merged-chr19-43511735-4	chr19	43511241	43512241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010324, intron 2 of 8)	intron (NM_010324, intron 2 of 8)	12864.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	265.0	498.5	374.5	204.0	582.0	473.0
Merged-chr10-75591719-4	chr10	75591220	75592220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359425, intron 1 of 7)	intron (NM_001359425, intron 1 of 7)	2339.0	NR_153110	23887.0	Mm.257927	NM_011820	ENSMUSG00000006344	Ggt5	AI551243|GGL|GGT-REL|Ggtla1	gamma-glutamyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103249706-4	chr11	103249219	103250219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	17682.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-162570579-4	chr1	162570087	162571087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347125)	promoter-TSS (NM_001347125)	72.0	NM_001356526	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	242.5	532.0	412.5	246.5	529.5	372.5
Merged-chr6-37143880-5	chr6	37143417	37144417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 2 of 32)	intron (NM_001347104, intron 2 of 32)	156059.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61067409-2	chr18	61066909	61067909	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008809, intron 8 of 22)	L2a|LINE|L2	22259.0	NM_008809	18596.0	Mm.4146	NM_008809	ENSMUSG00000024620	Pdgfrb	AI528809|CD140b|PDGFR-1|Pdgfr	platelet derived growth factor receptor, beta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113662093-4	chr6	113661635	113662635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	23668.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23888728-2	chr18	23888228	23889228	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 7 of 7)	intron (NM_001162941, intron 7 of 7)	-65960.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152962335-4	chr2	152961822	152962822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083618)	promoter-TSS (NM_001083618)	-163.0	NM_029064	74711.0	Mm.44746	NM_029064	ENSMUSG00000074673	Ttll9	1700016F23Rik|4930509O20Rik|AW046572	tubulin tyrosine ligase-like family, member 9	protein-coding	3.0	1.5	0.5	0.5	4.0	7.5
Merged-chr2-176708452-2	chr2	176707952	176708952	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001099327)	promoter-TSS (NM_001099327)	99.0	NM_001099327	100043387.0	Mm.444048	NM_001099327	ENSMUSG00000078878	Gm14305	-	predicted gene 14305	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-26415282-4	chr12	26414797	26415797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081977)	promoter-TSS (NM_001081977)	-35.0	NM_080563	108089.0	Mm.214932	NM_080563	ENSMUSG00000020642	Rnf144a	Rnf144|UIP4|Ubce7ip4	ring finger protein 144A	protein-coding	0.0	13.5	6.0	0.0	3.0	3.5
Merged-chr17-35269282-1	chr17	35268782	35269782	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	6159.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	2.0	1.0	3.5	0.0	0.0	0.0
Merged-chr14-31165173-2	chr14	31164673	31165673	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138672, intron 1 of 68)	intron (NM_138672, intron 1 of 68)	3468.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74533198-2	chr11	74532698	74533698	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	56960.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0.0	1.5	2.0	1.0	2.0	5.5
Merged-chr1-106627444-4	chr1	106626930	106627930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	-80799.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120836676-3	chr6	120836169	120837169	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153516, intron 1 of 6)	intron (NM_153516, intron 1 of 6)	439.0	NM_153516	94044.0	Mm.27990	NM_153516	ENSMUSG00000009112	Bcl2l13	BCL-RAMBO|E430016C20Rik|Mil-1|Mil1	BCL2-like 13 (apoptosis facilitator)	protein-coding	32.0	116.0	76.0	11.0	92.0	75.0
Merged-chr10-81378651-4	chr10	81378158	81379158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019757)	promoter-TSS (NM_019757)	-288.0	NM_019757	56371.0	Mm.24202	NM_019757	ENSMUSG00000020235	Fzr1	AW108046|Cdh1|FZR|FZR2|Fyr|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34527519-4	chr19	34527010	34528010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021460)	promoter-TSS (NM_021460)	-36.0	NM_021460	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-135188342-4	chr6	135187843	135188843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040296)	promoter-TSS (NR_040296)	-137.0	NR_040296	100502888.0	Mm.437844	NR_040296	ENSMUSG00000108239	Gm19434	-	predicted gene, 19434	ncRNA	14.0	62.5	59.5	36.0	55.5	40.5
Merged-chr2-102009816-4	chr2	102009293	102010293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178886, intron 4 of 5)	intron (NM_178886, intron 4 of 5)	123531.0	NM_029635	76501.0	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	1.5	1.0	15.0	7.0	5.5	6.0
Merged-chr17-51221302-4	chr17	51220815	51221815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41963.0	NM_001285991	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	5.5	31.0	9.5	3.5	31.0	9.5
Merged-chr19-37482816-4	chr19	37482293	37483293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	17539.0	NR_131009	78640.0	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165857717-4	chr2	165857250	165858250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	423.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-93193603-4	chr5	93193103	93194103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017367, intron 2 of 6)	intron (NM_017367, intron 2 of 6)	12892.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	6.0	28.0	5.0	10.0	15.0	9.5
Merged-chr4-83269841-4	chr4	83269351	83270351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 3 of 19)	B4|SINE|B4	54338.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	40.5	47.0	35.0	26.5	74.5	44.0
Merged-chr10-89443926-4	chr10	89443424	89444424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284344)	promoter-TSS (NM_001284344)	43.0	NM_001284344	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	88.5	233.0	180.5	176.0	218.5	190.0
Merged-chr3-9725569-8	chr3	9725029	9726029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	108150.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168541390-4	chr2	168540798	168541798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037177, intron 3 of 6)	intron (NM_001037177, intron 3 of 6)	49067.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64923149-4	chr5	64922648	64923648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9551.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53400537-4	chr15	53400013	53401013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-54330.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-3929348-4	chr16	3928854	3929854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029738, intron 8 of 11)	intron (NM_029738, intron 8 of 11)	20345.0	NM_029738	76779.0	Mm.458921	NM_029738	ENSMUSG00000014232	Cluap1	2310030D15Rik|2610111M03Rik	clusterin associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3137953-2	chr11	3137463	3138463	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 22 of 32)	Lx9|LINE|L1	13942.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29419623-4	chr19	29419117	29420117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 1 of 5)	L1MB7|LINE|L1	8698.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32132075-4	chr12	32131586	32132586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70807.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	0.0	0.5	0.5	0.0	0.5	0.5
Merged-chr9-44396897-4	chr9	44396400	44397400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293630)	promoter-TSS (NM_001293630)	-27.0	NM_001293631	14385.0	Mm.30087	NM_008063	ENSMUSG00000032114	Slc37a4	100043178|G6PT|G6pt1|GSD-1b|mG6PT	solute carrier family 37 (glucose-6-phosphate transporter), member 4	protein-coding	23.0	96.5	74.0	28.5	83.5	46.5
Merged-chr11-114907792-4	chr11	114907287	114908287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17746.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8858401-4	chr10	8857900	8858900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	27670.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	61.0	82.5	81.0	71.5	107.5	95.5
Merged-chr8-70614625-4	chr8	70614117	70615117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2227.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	46.0	232.5	165.0	84.5	172.5	142.0
Merged-chr9-83925073-4	chr9	83924518	83925518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305935)	promoter-TSS (NM_001305935)	-119.0	NM_001305935	12040.0	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156472352-2	chr1	156471852	156472852	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 1 of 15)	G-rich|Low_complexity|Low_complexity	1976.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	88.5	175.5	105.5	71.5	173.5	95.5
Merged-chr13-9090643-2	chr13	9090143	9091143	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-3238.0	NM_001311117	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58275318-4	chr9	58274819	58275819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22155.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34207805-4	chr10	34207296	34208296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172508)	promoter-TSS (NM_172508)	-245.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44130671-4	chr16	44130175	44131175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	8584.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99374649-4	chr5	99374138	99375138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-121711.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-124126596-4	chr9	124126112	124127112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009917, exon 2 of 2)	3' UTR (NM_009917, exon 2 of 2)	5069.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16294980-4	chr7	16294482	16295482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8187.0	NM_001136471	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	5.5	15.0	19.0	5.0	13.5	16.5
Merged-chr13-9191382-4	chr13	9190872	9191872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85153.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53149071-4	chr4	53148567	53149567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	10828.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	19.5	72.0	55.0	19.5	75.5	57.5
Merged-chr10-81627696-4	chr10	81627174	81628174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027480)	promoter-TSS (NM_027480)	-66.0	NM_181586	50721.0	Mm.25643	NM_181586	ENSMUSG00000034748	Sirt6	2810449N18Rik|AI043036|Sir2l6	sirtuin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85713686-4	chr11	85713199	85714199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045875, intron 1 of 5)	intron (NR_045875, intron 1 of 5)	6045.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100570224-4	chr5	100569726	100570726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139198, intron 1 of 4)	intron (NM_139198, intron 1 of 4)	1979.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138969300-4	chr4	138968777	138969777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025786)	TTS (NM_025786)	2165.0	NM_025786	66825.0	Mm.252312	NM_025786	ENSMUSG00000070661	Rnf186	9130020G10Rik	ring finger protein 186	protein-coding	16.5	20.0	15.0	19.0	22.0	16.5
Merged-chr17-53567579-4	chr17	53567105	53568105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151733, intron 1 of 16)	CpG	634.0	NR_151733	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32516892-4	chr9	32516443	32517443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	24509.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-113334658-4	chr11	113334146	113335146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027216, intron 6 of 9)	intron (NM_027216, intron 6 of 9)	-124977.0	NR_040276	319871.0	Mm.383743	NR_040276	ENSMUSG00000085421	4732490B19Rik	-	RIKEN cDNA 4732490B19 gene	ncRNA	6.5	1.0	5.0	8.0	11.5	12.0
Merged-chr7-38018659-4	chr7	38018152	38019152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011274, intron 1 of 10)	(TG)n|Simple_repeat|Simple_repeat	900.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	156.5	354.0	218.0	168.5	309.5	262.0
Merged-chr6-5103973-4	chr6	5103489	5104489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 7 of 15)	intron (NM_181595, intron 7 of 15)	89957.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-48882493-4	chr7	48882054	48883054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360812)	promoter-TSS (NM_001360812)	-958.0	NM_001360812	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21332340-4	chr5	21331849	21332849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 3 of 18)	intron (NM_029195, intron 3 of 18)	-40324.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6008801-4	chr17	6008298	6009298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357667, intron 7 of 24)	intron (NM_001357667, intron 7 of 24)	1218.0	NM_001290698	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68737518-4	chr10	68737020	68738020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	13774.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64812716-4	chr5	64812221	64813221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	9198.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27446220-2	chr7	27445720	27446720	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_032610, intron 1 of 35)	intron (NM_032610, intron 1 of 35)	369.0	NM_032610	80297.0	Mm.459123	NM_032610	ENSMUSG00000011751	Sptbn4	1700022P15Rik|5830426A08Rik|ROSA62|SpbIV|Spnb4|dyn|lnd|nmf261|nmf379|qv	spectrin beta, non-erythrocytic 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121748130-4	chr11	121747605	121748605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	45678.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117794707-2	chr11	117794207	117795207	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2953.0	NM_029964	77727.0	Mm.159981	NM_029964	ENSMUSG00000025573	6030468B19Rik	Il-40	RIKEN cDNA 6030468B19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72167406-2	chr5	72166906	72167906	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178599, intron 1 of 4)	intron (NM_178599, intron 1 of 4)	783.0	NM_001356611	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138683611-3	chr5	138683105	138684105	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60746.0	NM_183025	243308.0	Mm.36612	NM_183025	ENSMUSG00000056014	A430033K04Rik	C86988	RIKEN cDNA A430033K04 gene	protein-coding	173.5	272.5	249.0	124.5	281.5	227.5
Merged-chr14-114948523-4	chr14	114948014	114949014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	-2566.0	NR_126548	74982.0		NR_126548	ENSMUSG00000115372	1700100I10Rik	1700085D13Rik|4930481K08Rik	RIKEN cDNA 1700100I10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21992154-4	chr10	21991649	21992649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161849)	promoter-TSS (NM_001161849)	-74.0	NM_001161849	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	65.0	197.5	169.0	83.0	197.5	167.0
Merged-chr8-79163069-4	chr8	79162568	79163568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 8 of 14)	intron (NM_001294279, intron 8 of 14)	85515.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-115857485-4	chr4	115856968	115857968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355174, intron 3 of 11)	intron (NM_001355174, intron 3 of 11)	18270.0	NM_001355174	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79323636-4	chr15	79323187	79324187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016915, intron 1 of 15)	intron (NM_016915, intron 1 of 15)	4684.0	NM_016915	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	40.0	72.5	25.0	13.0	40.5	35.0
Merged-chr9-31029870-3	chr9	31029308	31030308	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172765)	promoter-TSS (NM_172765)	-836.0	NM_001115130	235132.0	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45013233-4	chr4	45012731	45013731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163284)	promoter-TSS (NM_001163284)	-819.0	NM_173399	230119.0	Mm.44222	NM_173399	ENSMUSG00000049657	Zbtb5	5930421I10|9430083K24Rik|AI646847|mKIAA0354	zinc finger and BTB domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-123934526-4	chr1	123934018	123935018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199021, intron 1 of 25)	intron (NM_199021, intron 1 of 25)	111041.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-133131159-4	chr1	133130664	133131664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133819)	promoter-TSS (NM_133819)	-2.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	27.0	78.0	34.0	29.0	80.0	39.5
Merged-chr16-97922577-4	chr16	97922078	97923078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174847)	promoter-TSS (NM_174847)	55.0	NM_174847	207781.0	Mm.1465	NM_174847	ENSMUSG00000045975	C2cd2	5730563M15|5830404H04Rik|AI314146|AI449533|BF168443|ORF25|mKIAA4045	C2 calcium-dependent domain containing 2	protein-coding	2.5	0.0	0.5	0.0	0.0	0.5
Merged-chr5-29854623-4	chr5	29854119	29855119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118683.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-88187974-4	chr11	88187439	88188439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172099, intron 6 of 9)	intron (NM_001172099, intron 6 of 9)	-6167.0	NM_001291270	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	0.0	6.0	2.0	0.0	3.0	1.0
Merged-chr5-81058360-4	chr5	81057859	81058859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198702, intron 1 of 27)	intron (NM_198702, intron 1 of 27)	36766.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	1.0	3.5	2.0	1.0	4.5	4.5
Merged-chr3-103914398-4	chr3	103913841	103914841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001356556, exon 1 of 8)	5' UTR (NM_001356556, exon 1 of 8)	221.0	NM_172684	229675.0	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|KDM9|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	4.0	6.5	7.5	1.0	5.5	3.0
Merged-chr12-65037714-4	chr12	65037200	65038200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177806, intron 1 of 13)	intron (NM_177806, intron 1 of 13)	1366.0	NM_177806	328110.0	Mm.283339	NM_177806	ENSMUSG00000035597	Prpf39	Srcs1	pre-mRNA processing factor 39	protein-coding	5.0	15.5	11.5	4.0	12.5	11.0
Merged-chr12-54999206-4	chr12	54998721	54999721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12885.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	2.5	15.5	9.0	1.0	10.0	6.0
Merged-chr3-95317506-2	chr3	95317006	95318006	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029789, intron 1 of 10)	intron (NM_029789, intron 1 of 10)	-1324.0	NM_001320492	76893.0	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	0.0	2.0	2.0	3.5	0.0	2.0
Merged-chr1-172513123-4	chr1	172512610	172513610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8020.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	93.0	277.5	189.0	60.5	207.5	128.5
Merged-chr7-116332218-2	chr7	116331718	116332718	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026533, intron 5 of 5)	intron (NM_026533, intron 5 of 5)	1972.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21936931-4	chr9	21936431	21937431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290299)	promoter-TSS (NM_001290299)	-79.0	NM_001290299	235044.0	Mm.277521	NM_144935	ENSMUSG00000040563	Plppr2	Lppr2|PRG-4	phospholipid phosphatase related 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-23125426-4	chr19	23124922	23125922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15804.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124904248-4	chr6	124903742	124904742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008479)	TTS (NM_008479)	7463.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101226341-4	chr11	101225833	101226833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007970, intron 1 of 20)	CpG	130.0	NM_007970	14055.0	Mm.5027	NM_007970	ENSMUSG00000006920	Ezh1	ENX-2	enhancer of zeste 1 polycomb repressive complex 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124690573-4	chr2	124690064	124691064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	36983.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86234019-4	chr1	86233536	86234536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027456, intron 19 of 20)	intron (NM_027456, intron 19 of 20)	-69185.0	NM_145222	227327.0	Mm.86467	NM_145222	ENSMUSG00000079445	B3gnt7	C330001H22Rik|beta-3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106779552-4	chr11	106779076	106780076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027785)	promoter-TSS (NR_027785)	-39.0	NM_015810	50776.0	Mm.859	NM_015810	ENSMUSG00000020718	Polg2	mtPolB|p55|polG-beta	polymerase (DNA directed), gamma 2, accessory subunit	protein-coding	32.0	104.0	76.0	54.5	139.5	80.0
Merged-chr5-139366033-4	chr5	139365542	139366542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	3703.0	NR_029768	723898.0		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-37241761-4	chr12	37241265	37242265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178767, exon 1 of 13)	5' UTR (NM_178767, exon 1 of 13)	126.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	86.0	314.0	163.0	74.5	311.5	186.5
Merged-chr13-9382029-4	chr13	9381536	9382536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	105511.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156040846-4	chr1	156040355	156041355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358627)	promoter-TSS (NM_001358627)	-6.0	NM_001160181	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	78.0	157.0	116.5	28.0	74.0	63.0
Merged-chr11-46062041-4	chr11	46061545	46062545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291890, intron 2 of 22)	intron (NM_001291890, intron 2 of 22)	6061.0	NM_001291891	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-16380325-4	chr14	16379832	16380832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009409, intron 1 of 35)	intron (NM_009409, intron 1 of 35)	15126.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	2.0	6.0	3.0	0.0	1.0	1.0
Merged-chr8-110618615-4	chr8	110618155	110619155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146216)	promoter-TSS (NM_146216)	88.0	NR_151675	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	48.5	103.0	75.5	50.5	86.0	97.0
Merged-chr1-120256066-4	chr1	120255563	120256563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085409, intron 2 of 5)	intron (NM_001085409, intron 2 of 5)	9217.0	NM_133186	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-99188939-1	chr11	99188439	99189439	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-33862.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	42.5	77.5	80.5	48.0	94.0	56.0
Merged-chr8-57463018-4	chr8	57462522	57463522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009136, intron 1 of 2)	intron (NM_009136, intron 1 of 2)	7099.0	NM_009136	20284.0	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65516013-4	chr3	65515508	65516508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12439.0	NM_178892	99929.0	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding	27.0	40.0	29.5	25.0	30.0	32.5
Merged-chr15-84981722-2	chr15	84981222	84982222	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	6249.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72362521-4	chr6	72362028	72363028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331173)	promoter-TSS (NM_001331173)	-96.0	NM_001331173	66510.0	Mm.170023	NM_025607	ENSMUSG00000055850	Rnf181	1700047F16Rik|2500002L14Rik|6230415N01Rik|C77350	ring finger protein 181	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153199307-4	chr2	153198791	153199791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 13 of 17)	intron (NM_133847, intron 13 of 17)	26150.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	23.5	104.5	37.5	25.5	105.5	43.5
Merged-chr1-86466088-4	chr1	86465582	86466582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	39753.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55097873-4	chr11	55097331	55098331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010299)	promoter-TSS (NM_010299)	-154.0	NM_010299	14667.0	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129189794-4	chr4	129189302	129190302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029036)	promoter-TSS (NM_029036)	7.0	NM_134151	107271.0	Mm.145488	NM_134151	ENSMUSG00000028811	Yars	AL024047|AU018965	tyrosyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90414784-4	chr5	90414271	90415271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46099.0	NM_009654	11657.0	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39418547-4	chr10	39418039	39419039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	48740.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8807553-2	chr17	8807054	8808054	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011866, intron 1 of 21)	intron (NM_011866, intron 1 of 21)	5809.0	NM_011866	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122611537-4	chr8	122611025	122612025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021502)	promoter-TSS (NM_021502)	-38.0	NM_016722	50917.0	Mm.1786	NM_016722	ENSMUSG00000015027	Galns	mFLJ00319	galactosamine (N-acetyl)-6-sulfate sulfatase	protein-coding	14.5	97.5	60.5	25.0	59.5	37.0
Merged-chr6-131247424-4	chr6	131246937	131247937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170851)	promoter-TSS (NM_001170851)	-75.0	NM_008462	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	31.0	71.0	61.0	33.5	88.5	74.5
Merged-chr7-45370689-4	chr7	45370174	45371174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011698)	promoter-TSS (NM_011698)	-110.0	NM_011698	22342.0	Mm.20472	NM_011698	ENSMUSG00000003872	Lin7b	LIN-7B|MALS-2|Veli2	lin-7 homolog B (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4917313-4	chr12	4916817	4917817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001099628)	promoter-TSS (NM_001099628)	-36.0	NM_001099628	320817.0	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132639004-4	chr4	132638521	132639521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_211357)	promoter-TSS (NM_211357)	-25.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	22.0	38.5	28.0	15.5	40.5	31.0
Merged-chr16-30064171-4	chr16	30063652	30064652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1205.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	5.5	9.5	12.5	4.0	9.0	19.5
Merged-chr2-44981821-4	chr2	44981315	44982315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AmnSINE1|SINE|Deu	41362.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10856067-4	chr17	10855572	10856572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317726, intron 1 of 6)	intron (NM_001317726, intron 1 of 6)	15713.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10188803-4	chr19	10188301	10189301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146094, intron 5 of 11)	intron (NM_146094, intron 5 of 11)	-2574.0	NR_105959	102465600.0		NR_105959	ENSMUSG00000098363	Mir6993	Gm27642|mmu-mir-6993	microRNA 6993	ncRNA	24.0	48.5	49.5	71.5	121.5	59.5
Merged-chr8-70375376-4	chr8	70374876	70375876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016685, intron 4 of 18)	CpG-14087	1828.0	NM_016685	12845.0	Mm.45071	NM_016685	ENSMUSG00000031849	Comp	TSP5	cartilage oligomeric matrix protein	protein-coding	17.5	11.5	25.5	8.5	12.0	15.5
Merged-chr11-79528173-4	chr11	79527675	79528675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033711, exon 2 of 2)	5' UTR (NM_001033711, exon 2 of 2)	2434.0	NM_146023	101488212.0	Mm.439665	NM_146023	ENSMUSG00000070354	Evi2	Evi2a-evi2b|Gm21975	ecotropic viral integration site 2	protein-coding	48.0	87.5	59.5	46.5	95.5	60.5
Merged-chr11-89002485-6	chr11	89002036	89003036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009546, intron 1 of 8)	intron (NM_009546, intron 1 of 8)	3133.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	79.5	231.5	211.0	72.0	217.0	165.0
Merged-chr5-134229652-4	chr5	134229217	134230217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286037)	promoter-TSS (NM_001286037)	-92.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134830857-2	chr6	134830375	134831375	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177687, intron 1 of 4)	intron (NM_177687, intron 1 of 4)	676.0	NM_177687	232430.0	Mm.267010	NM_177687	ENSMUSG00000032652	Crebl2	AI046348|B230205M03	cAMP responsive element binding protein-like 2	protein-coding	1.5	13.5	16.5	0.0	4.5	6.5
Merged-chr12-116054548-4	chr12	116054052	116055052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019565, intron 1 of 2)	intron (NM_019565, intron 1 of 2)	6828.0	NM_019565	56220.0	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding	40.0	64.5	88.5	42.5	48.5	95.5
Merged-chr11-21036371-4	chr11	21035888	21036888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54936.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6601680-4	chr17	6601189	6602189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166627)	promoter-TSS (NM_001166627)	18.0	NM_001166627	100040531.0	Mm.457987	NM_001166627	ENSMUSG00000095677	Dynlt1f	100040631|Dynlt1e	dynein light chain Tctex-type 1F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105704675-4	chr3	105704226	105705226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163356)	promoter-TSS (NM_001163356)	127.0	NM_175398	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	6.0	0.0	1.5	0.0	2.0	0.0
Merged-chr5-100798655-4	chr5	100798137	100799137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081107)	promoter-TSS (NM_001081107)	-37.0	NM_001081107	191578.0	Mm.21469	NM_180984	ENSMUSG00000035266	Helq	AU021725|D430018E21Rik|Hel308	helicase, POLQ-like	protein-coding	0.5	4.0	5.0	0.0	5.0	4.0
Merged-chr2-116895337-2	chr2	116894837	116895837	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4815.0	NR_040336	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44523954-4	chr11	44523464	44524464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 1 of 5)	intron (NM_001166553, intron 1 of 5)	4587.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-82354368-7	chr10	82353899	82354899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-113124.0	NM_001105557	237411.0		NM_172789	ENSMUSG00000062931	Zfp938	B230315N10Rik	zinc finger protein 938	protein-coding	35.5	32.5	59.5	10.5	48.0	26.5
Merged-chr4-154911393-4	chr4	154910907	154911907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12364.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	9.0	49.0	32.0	8.5	20.5	12.5
Merged-chr4-135316298-2	chr4	135315798	135316798	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	36916.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11598457-4	chr2	11597944	11598944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152824, intron 2 of 11)	ID_B1|SINE|B4	4755.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3679021-4	chr4	3678519	3679519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	898.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46458412-4	chr18	46457915	46458915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7401.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60726869-3	chr11	60726366	60727366	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022009, intron 1 of 29)	CpG	397.0	NM_022009	14248.0	Mm.339755	NM_022009	ENSMUSG00000002812	Flii	3632430F08Rik|Fliih	flightless I actin binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34187921-4	chr5	34187426	34188426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010753)	promoter-TSS (NM_010753)	-216.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21778334-4	chr19	21777849	21778849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031997)	promoter-TSS (NM_031997)	9.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9643720-4	chr4	9643216	9644216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177852)	promoter-TSS (NM_001177852)	1.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	31.5	59.0	33.5	16.0	32.0	27.5
Merged-chr5-124059835-4	chr5	124059328	124060328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27568.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	17.5	40.0	29.5	8.0	32.0	28.0
Merged-chr11-100397895-4	chr11	100397407	100398407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132425)	promoter-TSS (NR_132425)	-117.0	NM_010593	16480.0	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41503166-4	chr4	41502633	41503633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085515)	promoter-TSS (NM_001085515)	-58.0	NM_001085515	329828.0	Mm.27054	NM_001085515	ENSMUSG00000046312	AI464131	AA408153|AI604836|Gm762|Kiaa1161|Myorg|NET37	expressed sequence AI464131	protein-coding	11.5	4.0	0.0	0.0	2.5	6.0
Merged-chr4-150138267-4	chr4	150137759	150138759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019741, intron 7 of 13)	intron (NM_019741, intron 7 of 13)	-10713.0	NM_001085529	435818.0	Mm.359648	NM_001085529	ENSMUSG00000062064	Slc2a7	-	solute carrier family 2 (facilitated glucose transporter), member 7	protein-coding	0.0	3.5	14.0	0.0	3.5	13.5
Merged-chr17-34235139-4	chr17	34234629	34235629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3776.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	16.5	61.5	35.0	2.0	29.0	7.5
Merged-chr10-94464977-4	chr10	94464506	94465506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	ID_B1|SINE|B4	-49851.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-57361644-3	chr19	57361138	57362138	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040316)	promoter-TSS (NR_040316)	629.0	NM_145505	226252.0	Mm.358870	NM_145505	ENSMUSG00000033478	Fam160b1	AI450540|mKIAA1600	family with sequence similarity 160, member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120471314-2	chr6	120470814	120471814	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 1 of 12)	B2_Mm2|SINE|B2	8117.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	38.0	69.0	48.5	8.0	28.0	26.0
Merged-chr14-8215371-4	chr14	8214884	8215884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305937)	promoter-TSS (NM_001305937)	-864.0	NM_001305937	71393.0	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167834368-2	chr2	167833868	167834868	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97959.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-117879496-5	chr6	117878934	117879934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	16553.0	NM_001001792	22685.0	Mm.249661	NM_008616	ENSMUSG00000042097	Zfp239	Mok-2|Mok2|Znf239	zinc finger protein 239	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138619296-4	chr1	138618805	138619805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 1 of 9)	CpG	452.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21640994-7	chr16	21640460	21641460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 46 of 46)	intron (NM_001081366, intron 46 of 46)	53705.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62756965-4	chr11	62756459	62757459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-27866.0	NM_133208	170740.0	Mm.339982	NM_133208	ENSMUSG00000005267	Zfp287	B230333C16Rik|SKAT-2|Skat2|Znf287|mszf16|mszf74	zinc finger protein 287	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132078550-4	chr4	132078061	132079061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3248.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30545258-4	chr2	30544757	30545757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-49787.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75935816-4	chr10	75935332	75936332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175329, exon 2 of 5)	5' UTR (NM_175329, exon 2 of 5)	2702.0	NM_175329	103172.0	Mm.333849	NM_175329	ENSMUSG00000049422	Chchd10	1620401E04Rik|AI267078|Ndg2	coiled-coil-helix-coiled-coil-helix domain containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-107869160-4	chr5	107868661	107869661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007964, intron 1 of 17)	CpG	5946.0	NM_007964	14020.0	Mm.35796	NM_007964	ENSMUSG00000011831	Evi5	NB4S	ecotropic viral integration site 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-129941807-4	chr5	129941245	129942245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001327)	promoter-TSS (NM_001001327)	-364.0	NM_001001327	69568.0	Mm.288718	NM_027121	ENSMUSG00000066735	Vkorc1l1	2310024K08Rik	vitamin K epoxide reductase complex, subunit 1-like 1	protein-coding	33.5	71.0	68.5	33.5	98.0	62.0
Merged-chr12-100089452-4	chr12	100088923	100089923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22908.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-3743453-1	chr16	3742953	3743953	+	1000.0	f0_balb.idr	promoter-TSS (NM_148924)	promoter-TSS (NM_148924)	-646.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-92375904-2	chr2	92375404	92376404	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028114, exon 2 of 11)	non-coding (NR_028114, exon 2 of 11)	665.0	NM_145122	18633.0	Mm.202782	NM_145122	ENSMUSG00000027222	Pex16	-	peroxisomal biogenesis factor 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-63911065-4	chr7	63910568	63911568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-5789.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	127.0	349.5	243.5	172.0	324.5	245.5
Merged-chr11-117194645-4	chr11	117194189	117195189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4972.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146777251-4	chr5	146776733	146777733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	17723.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	4.0	17.0	24.5	14.0	13.5	18.5
Merged-chr12-98628175-4	chr12	98627661	98628661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289572)	promoter-TSS (NM_001289572)	19.0	NM_001289574	104871.0	Mm.210053	NM_178914	ENSMUSG00000021007	Spata7	AI661438|B230306G18Rik|HSD3	spermatogenesis associated 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22117172-4	chr9	22116681	22117681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357309)	promoter-TSS (NM_001357309)	14.0	NM_001357311	66126.0	Mm.29801	NM_170777	ENSMUSG00000013822	Elof1	1110011K10Rik	ELF1 homolog, elongation factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-87696645-3	chr10	87696156	87697156	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-161609.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	42.5	33.0	30.5	22.0	6.5	3.5
Merged-chr16-21411891-4	chr16	21411372	21412372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11246.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80561317-4	chr15	80560812	80561812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163189)	promoter-TSS (NM_001163189)	-842.0	NM_001163189	383075.0	Mm.297626	NM_001163189	ENSMUSG00000050439	Enthd1	Gm1242|Gm86	ENTH domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67953197-4	chr7	67952690	67953690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 1 of 20)	CpG-13221	933.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135856039-4	chr4	135855569	135856569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010178)	promoter-TSS (NM_010178)	-2.0	NM_001284196	14105.0	Mm.10229	NM_010178	ENSMUSG00000028676	Srsf10	FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4149934-4	chr7	4149443	4150443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175529)	promoter-TSS (NM_175529)	-71.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11453180-2	chr4	11452680	11453680	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32778.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110018264-4	chr7	110017744	110018744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362172)	promoter-TSS (NM_001362172)	-7.0	NM_181517	233726.0	Mm.222328	NM_181517	ENSMUSG00000066232	Ipo7	A330055O14Rik|C330016G14|Imp7|Ranbp7	importin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-53593667-2	chr5	53593167	53594167	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359152, intron 1 of 9)	intron (NM_001359152, intron 1 of 9)	3181.0	NM_001080927	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124242382-4	chr8	124241855	124242855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139272, intron 1 of 15)	MIR|SINE|MIR	10961.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	42.5	82.0	52.5	53.0	92.5	53.5
Merged-chr12-83922081-4	chr12	83921620	83922620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073563)	promoter-TSS (NR_073563)	-186.0	NR_073564	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126593367-4	chr8	126592866	126593866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164598)	promoter-TSS (NM_001164598)	70.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	44.0	66.0	121.5	63.5	98.0	85.0
Merged-chr7-42642620-4	chr7	42642144	42643144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001242388)	promoter-TSS (NM_001242388)	-40.0	NM_001242388	208111.0	Mm.387841	NM_001034857	ENSMUSG00000074158	Zfp976	9830147E19Rik|C330019L16Rik	zinc finger protein 976	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91948255-1	chr2	91947755	91948755	+	1000.0	f0_c57.idr	intron (NM_001166597, intron 1 of 31)	intron (NM_001166597, intron 1 of 31)	2093.0	NM_001166597	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101650587-4	chr4	101650068	101651068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175036, intron 1 of 3)	intron (NM_175036, intron 1 of 3)	2785.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	21.5	64.5	47.5	27.5	68.0	67.0
Merged-chr9-120571502-4	chr9	120570984	120571984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025974)	promoter-TSS (NM_025974)	-33.0	NM_025974	67115.0	Mm.289810	NM_025974	ENSMUSG00000025794	Rpl14	3100001N19Rik|AA407502|AL022816|CAG-ISL-7|CTG-B33|L14	ribosomal protein L14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-122853813-4	chr4	122853291	122854291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008917, intron 6 of 8)	intron (NM_008917, intron 6 of 8)	17564.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8772757-2	chr12	8772257	8773257	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011519, intron 1 of 4)	CpG	1361.0	NM_011519	20969.0	Mm.2580	NM_011519	ENSMUSG00000020592	Sdc1	AA408134|AA409076|CD138|Sstn|Synd|Synd1|syn-1	syndecan 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22818601-4	chr11	22818080	22819080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41155.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53476985-3	chr19	53476482	53477482	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12186.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-9123206-4	chr15	9122718	9123718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 5 of 9)	intron (NM_013787, intron 5 of 9)	17236.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8519042-4	chr10	8518547	8519547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177387)	promoter-TSS (NM_177387)	-222.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	25.5	25.5	25.5	21.5	31.5	20.5
Merged-chr10-76237941-4	chr10	76237452	76238452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126571)	promoter-TSS (NR_126571)	-87.0	NM_133182	15468.0	Mm.32020	NM_133182	ENSMUSG00000020230	Prmt2	AI504737|Hrmt1l1	protein arginine N-methyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84639429-7	chr8	84638921	84639921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007578, exon 47 of 47)	exon (NM_007578, exon 47 of 47)	23431.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-79622468-4	chr18	79621974	79622974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-424421.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	4.0	4.5	11.0	0.5	2.5	3.5
Merged-chr8-117453749-4	chr8	117453238	117454238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_106045)	TTS (NR_106045)	715.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-70531485-4	chr18	70530976	70531976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1155.0	NM_001289515	26447.0	Mm.244352	NM_011972	ENSMUSG00000038425	Poli	Rad30b	polymerase (DNA directed), iota	protein-coding	138.0	258.5	237.0	132.5	319.5	185.5
Merged-chr14-101640528-8	chr14	101640040	101641040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033132)	promoter-TSS (NM_001033132)	-69.0	NM_001168592	66200.0	Mm.250474	NM_001033132	ENSMUSG00000075486	Commd6	1110059J08Rik|1700063H17Rik	COMM domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-106836349-4	chr13	106835844	106836844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360897, intron 28 of 30)	intron (NM_001360897, intron 28 of 30)	100614.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	0.0	1.0	1.0	0.0	1.5	1.5
Merged-chr4-43287553-4	chr4	43287040	43288040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177195, intron 2 of 28)	MTE2b|LTR|ERVL-MaLR	20381.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	71.5	126.0	103.5	62.0	120.5	109.0
Merged-chr1-88214772-2	chr1	88214272	88215272	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201645, intron 1 of 4)	intron (NM_201645, intron 1 of 4)	2813.0	NM_201645	394436.0	Mm.300095	NM_201645	ENSMUSG00000089960	Ugt1a1	Gnt1|UDPGT 1-1|UGT1A01|Udpgt-1a|UgtBr1	UDP glucuronosyltransferase 1 family, polypeptide A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116597601-4	chr4	116597118	116598118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029450)	promoter-TSS (NR_029450)	12.0	NR_029450	654318.0	Mm.255685	NR_029450	ENSMUSG00000085408	C530005A16Rik	D930044c15rik	RIKEN cDNA C530005A16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47365242-4	chr14	47364735	47365735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8625.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	18.0	53.0	48.0	7.0	27.0	18.5
Merged-chr9-65523565-2	chr9	65523065	65524065	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56522.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97704016-2	chr11	97703516	97704516	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011971, intron 2 of 5)	intron (NM_011971, intron 2 of 5)	582.0	NM_011971	26446.0	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56829854-2	chr17	56829354	56830354	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009056, intron 1 of 16)	CpG	1154.0	NM_009056	19725.0	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-66954376-4	chr10	66953905	66954905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34021.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35066840-4	chr7	35066337	35067337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-10271.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24800750-4	chr13	24800224	24801224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024473)	promoter-TSS (NM_024473)	-933.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100582629-4	chr5	100582133	100583133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10428.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	2.0	12.0	10.0	2.0	13.0	6.5
Merged-chr2-164861645-2	chr2	164861155	164862155	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3947.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	23.0	60.5	40.0	29.5	41.0	60.5
Merged-chr2-91082300-5	chr2	91081774	91082774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11959.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91703496-4	chr6	91702987	91703987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	MIRb|SINE|MIR	19420.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74237080-4	chr1	74236606	74237606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 2 of 10)	CpG	589.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66182773-4	chr14	66182268	66183268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 5 of 30)	intron (NM_001162366, intron 5 of 30)	31056.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-87190879-4	chr14	87190389	87191389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49665.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	14.0	32.5	38.5	27.0	33.5	7.5
Merged-chr11-90240863-1	chr11	90240363	90241363	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-8613.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127708358-4	chr7	127707852	127708852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030428)	promoter-TSS (NR_030428)	-135.0	NR_030428	791073.0		NR_030428	ENSMUSG00000076454	Mir762	Mirn762|mir-762|mmu-mir-762	microRNA 762	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76660208-4	chr15	76659712	76660712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358912)	promoter-TSS (NM_001358912)	-4.0	NM_019396	54151.0	Mm.247752	NM_019396	ENSMUSG00000053929	Cyhr1	1110031M01Rik|AU042374|Chrp	cysteine and histidine rich 1	protein-coding	0.0	4.0	0.0	0.0	3.5	0.5
Merged-chr1-54798636-4	chr1	54798122	54799122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 2 of 27)	intron (NM_001081433, intron 2 of 27)	127765.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	4.0	10.5	11.5	4.0	12.5	8.0
Merged-chr12-98746319-4	chr12	98745828	98746828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160107)	promoter-TSS (NM_001160107)	-640.0	NM_001160107	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35118421-7	chr7	35117929	35118929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287523)	promoter-TSS (NM_001287523)	-864.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	3.5	52.5	18.5	5.5	37.5	25.0
Merged-chr11-115161861-5	chr11	115161434	115162434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163753, exon 9 of 9)	3' UTR (NM_001163753, exon 9 of 9)	-1407.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	18.5	81.0	55.0	21.0	84.5	63.5
Merged-chr3-79535786-2	chr3	79535286	79536286	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	31893.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.0	0.0	2.0	0.0	0.0	2.0
Merged-chr8-125054697-4	chr8	125054159	125055159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 1 of 12)	CpG	464.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	115.5	233.5	284.0	95.5	166.5	229.5
Merged-chr13-56703001-4	chr13	56702548	56703548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164042)	promoter-TSS (NM_001164042)	-4.0	NM_001164041	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	52.5	29.5	37.0	47.5	43.0	33.0
Merged-chr17-24285898-3	chr17	24285390	24286390	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001031621, intron 21 of 29)	intron (NM_001031621, intron 21 of 29)	-34481.0	NM_007634	12449.0	Mm.77695	NM_007634	ENSMUSG00000072082	Ccnf	CycF|Fbxo1	cyclin F	protein-coding	0.0	1.5	0.0	14.0	53.0	28.5
Merged-chr13-113600855-4	chr13	113600361	113601361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	17703.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3936639-2	chr4	3936139	3937139	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019969, intron 1 of 5)	intron (NM_019969, intron 1 of 5)	1766.0	NM_019969	56711.0	Mm.331467	NM_019969	ENSMUSG00000003282	Plag1	-	pleiomorphic adenoma gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120864568-2	chr10	120864068	120865068	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177092, intron 2 of 6)	intron (NM_177092, intron 2 of 6)	6939.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	3.5	0.0	0.5	1.5	0.0	0.5
Merged-chr11-23256935-2	chr11	23256435	23257435	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035226, intron 2 of 25)	intron (NM_001035226, intron 2 of 25)	894.0	NM_134014	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105964710-4	chr1	105964203	105965203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	25579.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	75.5	264.5	178.5	131.0	301.0	212.5
Merged-chr14-55015303-4	chr14	55014804	55015804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026890)	promoter-TSS (NM_026890)	-150.0	NM_026890	68966.0	Mm.21214	NM_026890	ENSMUSG00000022204	Ngdn	1500001L15Rik|Ngd|neuroguidin	neuroguidin, EIF4E binding protein	protein-coding	165.0	327.5	234.0	143.5	344.0	192.0
Merged-chr10-93950163-4	chr10	93949662	93950662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30C_MM|LTR|ERV1	13701.0	NR_029764	723908.0		NR_029764	ENSMUSG00000065607	Mir331	Mirn331|mmu-mir-331	microRNA 331	ncRNA	59.5	147.5	74.0	26.5	62.5	26.0
Merged-chr17-27190024-2	chr17	27189548	27190548	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_146075, exon 9 of 9)	3' UTR (NM_146075, exon 9 of 9)	14390.0	NM_146075	224640.0	Mm.29689	NM_146075	ENSMUSG00000044857	Lemd2	BC026588|Lem2|NET25	LEM domain containing 2	protein-coding	0.0	0.0	2.0	13.5	0.5	0.0
Merged-chr13-34994203-4	chr13	34993704	34994704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073427)	promoter-TSS (NR_073427)	-60.0	NM_001110331	23986.0	Mm.491141	NM_011868	ENSMUSG00000021417	Eci2	Acbd2|Drs1|Hca88|Peci	enoyl-Coenzyme A delta isomerase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-25883562-4	chr18	25883052	25884052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-129395.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5758674-2	chr17	5758174	5759174	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39983.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-30950016-7	chr1	30949526	30950526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002688)	promoter-TSS (NR_002688)	-271.0	NM_011200	19243.0	Mm.491181	NM_011200	ENSMUSG00000026064	Ptp4a1	AA415290|AU019864|C130021B01|Prl-1	protein tyrosine phosphatase 4a1	protein-coding	35.0	52.5	40.0	37.0	53.0	41.5
Merged-chr7-24530534-4	chr7	24530047	24531047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153134)	promoter-TSS (NM_153134)	-101.0	NM_153134	210146.0	Mm.41108	NM_153134	ENSMUSG00000041037	Irgq	AF322649|FKSG27|Irgq1	immunity-related GTPase family, Q	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-25059192-4	chr16	25058667	25059667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040374)	promoter-TSS (NR_040374)	-472.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49981757-2	chr16	49981257	49982257	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045001, intron 1 of 3)	intron (NR_045001, intron 1 of 3)	1297.0	NR_045001	628951.0	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53349479-2	chr11	53348979	53349979	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1288.0	NM_033565	93736.0	Mm.395281	NM_033565	ENSMUSG00000049470	Aff4	AF5Q31|Alf4|Laf4l|MCEF	AF4/FMR2 family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5805264-2	chr13	5804764	5805764	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	52828.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123891864-4	chr5	123891382	123892382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11862.0	NM_175520	243270.0	Mm.33362	NM_175520	ENSMUSG00000049241	Hcar1	Gpr81	hydrocarboxylic acid receptor 1	protein-coding	0.0	9.5	2.0	0.0	3.5	3.0
Merged-chr10-25464454-4	chr10	25463970	25464970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 4 of 16)	intron (NM_001358754, intron 4 of 16)	56102.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41483202-4	chr19	41482712	41483712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-42040.0	NM_001326287	627352.0	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	3.5	0.0	0.0	3.5	0.0	0.5
Merged-chr7-29984237-2	chr7	29983737	29984737	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_001033355, intron 1 of 9)	intron (NM_001033355, intron 1 of 9)	282.0	NM_001167872	243905.0	Mm.322432	NM_001033355	ENSMUSG00000074221	Zfp568	C80731|Gm1691|Znf568|chato	zinc finger protein 568	protein-coding	34.5	146.5	138.5	178.5	389.5	264.5
Merged-chr5-95935851-2	chr5	95935351	95936351	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TATG)n|Simple_repeat|Simple_repeat	-21088.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-129895674-4	chr5	129895176	129896176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183088)	promoter-TSS (NM_183088)	-47.0	NM_001359408	71970.0	Mm.422716	NM_183088	ENSMUSG00000034173	Zbed5	2410018M08Rik|Scand3	zinc finger, BED type containing 5	protein-coding	8.0	3.5	6.5	8.0	0.0	4.0
Merged-chr15-51734412-4	chr15	51733904	51734904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131057.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	0.0	1.5	0.0	0.5	3.0	2.0
Merged-chr4-66852234-4	chr4	66851732	66852732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24681.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	4.0	0.5	0.0	0.5	8.0	2.5
Merged-chr2-165933985-3	chr2	165933498	165934498	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49160.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.0	2.5	1.5	9.5	11.0	24.5
Merged-chr7-125608023-4	chr7	125607552	125608552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021887, intron 1 of 8)	intron (NM_021887, intron 1 of 8)	4623.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	20.0	31.0	24.0	16.5	24.0	20.5
Merged-chr3-8922305-2	chr3	8921805	8922805	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025434, intron 1 of 2)	Lx6|LINE|L1	1552.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38457370-4	chr16	38456868	38457868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1565.0	NM_001359898	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-12672148-4	chr8	12671636	12672636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198031)	promoter-TSS (NM_198031)	-36.0	NM_198031	259279.0	Mm.142095	NM_198031	ENSMUSG00000000759	Tubgcp3	GCP3|Spc98p	tubulin, gamma complex associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-99200208-4	chr4	99199717	99200717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175029, intron 1 of 10)	intron (NM_175029, intron 1 of 10)	6070.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	51.0	138.0	132.5	60.0	86.5	107.0
Merged-chr17-24779682-3	chr17	24779189	24780189	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-24693.0	NM_029197	75178.0	Mm.52592	NM_029197	ENSMUSG00000024155	Meiob	4930528F23Rik|MLZ-675	meiosis specific with OB domains	protein-coding	1.0	3.5	8.0	31.5	62.0	40.5
Merged-chr4-120925042-4	chr4	120924547	120925547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160043)	promoter-TSS (NM_001160043)	-42.0	NM_001160043	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103028430-4	chr11	103027920	103028920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008707)	promoter-TSS (NM_008707)	-123.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94491526-2	chr11	94491026	94492026	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361558, intron 8 of 8)	intron (NM_001361558, intron 8 of 8)	-6216.0	NM_144827	217116.0	Mm.156123	NM_144827	ENSMUSG00000020867	Spata20	Tisp78	spermatogenesis associated 20	protein-coding	0.0	0.5	0.0	3.5	0.0	0.0
Merged-chr12-103333078-4	chr12	103332580	103333580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 6 of 9)	MIR3|SINE|MIR	18121.0	NM_001195726	100504156.0	Mm.425749	NM_001195726	ENSMUSG00000096753	Fam181a	EG544888	family with sequence similarity 181, member A	protein-coding	0.5	2.5	1.0	0.5	3.0	0.5
Merged-chr17-34906091-2	chr17	34905591	34906591	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286575, intron 11 of 27)	intron (NM_001286575, intron 11 of 27)	7117.0	NM_145830	110147.0	Mm.35345	NM_145830	ENSMUSG00000013787	Ehmt2	Bat8|D17Ertd710e|G9a|KMT1C|NG36	euchromatic histone lysine N-methyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3408226-2	chr11	3407726	3408726	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010718, intron 1 of 15)	intron (NM_010718, intron 1 of 15)	1012.0	NM_010718	16886.0	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-5367122-4	chr5	5366567	5367567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	13184.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	197.0	458.0	305.5	56.5	154.5	162.0
Merged-chr4-47347230-4	chr4	47346722	47347722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6000.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-67840361-4	chr9	67839876	67840876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177184)	promoter-TSS (NM_177184)	-20.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	38.0	85.0	87.0	65.5	114.5	109.5
Merged-chr17-29397110-4	chr17	29396651	29397651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36237.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	29.0	111.5	32.5	28.5	111.5	30.5
Merged-chr4-53414182-4	chr4	53413678	53414678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26235.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106369546-4	chr1	106369043	106370043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 12 of 16)	MTEb|LTR|ERVL-MaLR	177088.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0.0	0.5	1.5	0.0	0.5	1.5
Merged-chr9-110709931-4	chr9	110709410	110710410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028312, exon 4 of 7)	exon (NM_028312, exon 4 of 7)	32700.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37346034-4	chr13	37345518	37346518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	673.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	36.5	125.0	78.5	53.0	90.0	72.5
Merged-chr18-12731563-4	chr18	12731081	12732081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028341, intron 10 of 13)	intron (NM_028341, intron 10 of 13)	-9774.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122556808-4	chr8	122556329	122557329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5500.0	NM_001357349	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	103.5	322.0	253.0	62.5	176.0	136.5
Merged-chr6-83053802-4	chr6	83053278	83054278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007517)	promoter-TSS (NM_007517)	-743.0	NM_007517	11993.0	Mm.386752	NM_007517	ENSMUSG00000068328	Aup1	AA589454	ancient ubiquitous protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62188939-4	chr18	62188412	62189412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8812.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	78.5	200.0	148.0	78.5	167.5	128.5
Merged-chr4-101656261-4	chr4	101655768	101656768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175036, exon 3 of 4)	exon (NM_175036, exon 3 of 4)	8485.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	161.5	453.0	259.5	93.0	368.0	228.0
Merged-chr8-125734222-4	chr8	125733720	125734720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310688)	promoter-TSS (NM_001310688)	17.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-88481346-3	chr9	88480809	88481809	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284328, intron 1 of 11)	CpG	1088.0	NM_001311113	56403.0	Mm.260545	NM_019666	ENSMUSG00000032423	Syncrip	2610109K23Rik|4632417O19Rik|GRY-RBP|Nsap1|Nsap1l|hnRNP Q|pp68	synaptotagmin binding, cytoplasmic RNA interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173022413-4	chr2	173021928	173022928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019547, intron 1 of 3)	CpG	526.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	7.5	22.0	22.5	12.0	35.0	24.5
Merged-chr11-69980695-4	chr11	69980204	69981204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026017)	promoter-TSS (NM_026017)	-374.0	NM_001253700	54351.0	Mm.13430	NM_018740	ENSMUSG00000018565	Elp5	Derp6|Rai12	elongator acetyltransferase complex subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58215449-4	chr15	58214958	58215958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026346)	promoter-TSS (NM_026346)	-566.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83973554-1	chr8	83973054	83974054	+	1000.0	f1_c57bl6.idr	intron (NM_008854, intron 1 of 9)	intron (NM_008854, intron 1 of 9)	576.0	NM_008854	18747.0	Mm.19111	NM_008854	ENSMUSG00000005469	Prkaca	PKCD|Pkaca	protein kinase, cAMP dependent, catalytic, alpha	protein-coding	0.0	3.5	1.5	5.5	8.0	6.5
Merged-chr6-29468806-2	chr6	29468306	29469306	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025381, intron 1 of 1)	intron (NM_025381, intron 1 of 1)	1023.0	NM_025381	66144.0	Mm.371614	NM_025381	ENSMUSG00000004285	Atp6v1f	1110004G16Rik	ATPase, H+ transporting, lysosomal V1 subunit F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128749754-2	chr2	128749254	128750254	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 4 of 18)	B1_Mur3|SINE|Alu	50839.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	12.5	41.5	46.0	25.5	44.0	43.0
Merged-chr5-64297745-2	chr5	64297245	64298245	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 11 of 18)	intron (NM_001289514, intron 11 of 18)	67388.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	10.5	35.5	30.5	8.5	15.0	11.5
Merged-chr10-66928340-4	chr10	66927850	66928850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7966.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-78703107-4	chr1	78702626	78703626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033606, intron 12 of 14)	intron (NM_001033606, intron 12 of 14)	44686.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	2.0	4.5	13.0	32.0	33.5	51.0
Merged-chr11-120713347-2	chr11	120712847	120713847	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153545)	promoter-TSS (NM_153545)	420.0	NM_016665	20892.0	Mm.259716	NM_016665	ENSMUSG00000025144	Cenpx	Stra13	centromere protein X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79348288-4	chr15	79347780	79348780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304832)	promoter-TSS (NM_001304832)	-122.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	6.0	8.5	11.5	4.0	3.0	1.5
Merged-chr7-99434975-4	chr7	99434450	99435450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362168, intron 4 of 17)	intron (NM_001362168, intron 4 of 17)	-31054.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	18.0	14.0	15.5	17.5	16.5	24.0
Merged-chr7-97027058-4	chr7	97026558	97027558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153591, intron 7 of 13)	intron (NM_153591, intron 7 of 13)	-54693.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	9.5	23.0	14.0	6.5	33.5	19.0
Merged-chr5-135551787-4	chr5	135551309	135552309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-6687.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	13.0	26.0	13.0	33.5	58.0	26.0
Merged-chr10-14133103-4	chr10	14132615	14133615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 5 of 9)	intron (NM_001358782, intron 5 of 9)	166736.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	17.5	78.5	27.5	21.0	41.0	38.0
Merged-chr19-37439457-3	chr19	37438962	37439962	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008245, intron 3 of 3)	intron (NM_008245, intron 3 of 3)	4621.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	9.0	11.5	19.0	14.0	48.5	45.0
Merged-chr19-40831296-4	chr19	40830824	40831824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172839)	promoter-TSS (NM_172839)	45.0	NM_172839	240665.0	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding	3.5	8.5	0.0	2.0	6.0	8.0
Merged-chr7-43579530-4	chr7	43578990	43579990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172482)	promoter-TSS (NM_172482)	-96.0	NM_172482	210105.0	Mm.234422	NM_172482	ENSMUSG00000030469	Zfp719	8030458J18|9430094P17Rik|C630016O21Rik|mszf6	zinc finger protein 719	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100702679-4	chr11	100702116	100703116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030150, intron 4 of 12)	B2_Mm2|SINE|B2	1655.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85397323-4	chr12	85396844	85397844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22627.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156257337-4	chr2	156256845	156257845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172674, intron 4 of 17)	intron (NM_172674, intron 4 of 17)	-55128.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	13.5	13.5	23.0	22.5	15.0	22.0
Merged-chr7-27197950-2	chr7	27197450	27198450	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290513, intron 2 of 7)	intron (NM_001290513, intron 2 of 7)	-1679.0	NM_001285825	53607.0	Mm.386890	NM_015782	ENSMUSG00000061479	Snrpa	C430021M15Rik|Rnu1a-1|Rnu1a1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34194637-4	chr19	34194163	34195163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360718, intron 1 of 10)	(CA)n|Simple_repeat|Simple_repeat	1729.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51166290-4	chr14	51165792	51166792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4032.0	NM_019398	54159.0	Mm.377125	NM_019398	ENSMUSG00000059606	Rnase2b	Ear5|Raf4|mR5	ribonuclease, RNase A family, 2B (liver, eosinophil-derived neurotoxin)	protein-coding	28.0	61.0	24.0	4.0	37.5	13.5
Merged-chr14-54776333-4	chr14	54775811	54776811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	5575.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	63.5	119.0	106.0	32.5	125.0	73.5
Merged-chr1-67477318-3	chr1	67476813	67477813	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	354286.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55488897-4	chr12	55488391	55489391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010907)	TTS (NM_010907)	3756.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108306174-4	chr9	108305672	108306672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313961)	promoter-TSS (NM_001313961)	12.0	NM_016802	11848.0	Mm.757	NM_016802	ENSMUSG00000007815	Rhoa	Arha|Arha1|Arha2	ras homolog family member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25891755-4	chr15	25891266	25892266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 2 of 8)	ID_B1|SINE|B4	-41786.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54522055-2	chr11	54521555	54522555	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175258)	promoter-TSS (NM_175258)	-790.0	NM_001252494	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85123250-4	chr12	85122747	85123747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030225, intron 9 of 14)	intron (NM_030225, intron 9 of 14)	12414.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12168638-4	chr18	12168136	12169136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029623)	promoter-TSS (NM_029623)	-94.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	5.5	28.0	38.0	12.0	15.5	16.0
Merged-chr11-22815417-4	chr11	22814918	22815918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	44317.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-77795439-4	chr14	77794934	77795934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033440, intron 2 of 2)	intron (NM_001033440, intron 2 of 2)	3534.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	100.5	254.5	201.5	75.0	96.5	104.5
Merged-chr10-41809642-4	chr10	41809147	41810147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243075)	promoter-TSS (NM_001243075)	16.0	NM_001243075	103268.0	Mm.338605	NM_026643	ENSMUSG00000019813	Cep57l1	2410017P07Rik|4930484D11Rik|AI607327|cep57R	centrosomal protein 57-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-16508257-4	chr11	16507752	16508752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011343, exon 1 of 4)	5' UTR (NM_011343, exon 1 of 4)	232.0	NM_011343	20335.0	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	105.0	260.5	190.0	115.5	212.0	193.5
Merged-chr2-129373489-4	chr2	129372973	129373973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015474, intron 2 of 2)	intron (NR_015474, intron 2 of 2)	-2334.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	144.5	288.0	158.5	116.0	219.0	113.0
Merged-chr4-3768261-1	chr4	3767761	3768761	+	1000.0	f1_balb.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	53297.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	44.5	99.0	66.0	50.5	97.5	92.0
Merged-chr3-123508440-4	chr3	123507959	123508959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028574)	promoter-TSS (NR_028574)	-123.0	NR_028574	69895.0	Mm.260791	NR_028574	ENSMUSG00000104960	Snhg8	1110065M07Rik|2010109N14Rik	small nucleolar RNA host gene 8	ncRNA	61.0	252.5	172.0	37.0	247.5	158.5
Merged-chr3-27185689-2	chr3	27185189	27186189	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	2685.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-15179697-4	chr3	15179200	15180200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	152602.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46893142-4	chr8	46892666	46893666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33A|LTR|ERVL	-93721.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119488981-2	chr13	119488481	119489481	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027974)	promoter-TSS (NR_027974)	121.0	NM_001177666	633640.0	Mm.46679	NM_001039244	ENSMUSG00000074634	Tmem267	EG633640|Gm7120	transmembrane protein 267	protein-coding	8.0	22.0	5.0	16.0	8.0	15.5
Merged-chr7-29859996-4	chr7	29859494	29860494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172740)	promoter-TSS (NM_172740)	15.0	NM_172740	233058.0	Mm.297657	NM_172740	ENSMUSG00000058402	Zfp420	B230119D13|B230312I18Rik|mszf59-1|mszf70	zinc finger protein 420	protein-coding	23.5	20.5	9.0	20.0	24.5	27.0
Merged-chr10-84402018-4	chr10	84401534	84402534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 2 of 6)	intron (NM_001004363, intron 2 of 6)	38437.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55256456-4	chr19	55255938	55256938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027976, intron 1 of 21)	L1MB5|LINE|L1	3069.0	NM_027976	433256.0	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8915748-4	chr4	8915257	8916257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	164433.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112898143-2	chr12	112897643	112898643	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22398.0	NR_105906	102465567.0		NR_105906	ENSMUSG00000098338	Mir6941	Gm27923|mmu-mir-6941	microRNA 6941	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83692042-2	chr17	83691542	83692542	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14121.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107317906-4	chr11	107317390	107318390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	intron (NR_153311, intron 4 of 9)	-128509.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55386972-3	chr14	55386479	55387479	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91779.0	NM_001037938	28200.0	Mm.27427	NM_030686	ENSMUSG00000022210	Dhrs4	AI043103|AI790593|CR|D14Ucla2|NDRD|PHCR|PSCD|RRD|mouNRDR	dehydrogenase/reductase (SDR family) member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142929311-4	chr5	142928839	142929839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-22585.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-109057670-4	chr9	109057166	109058166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011637)	TTS (NM_011637)	1585.0	NM_001012236	22040.0	Mm.439964	NM_011637	ENSMUSG00000049734	Trex1	AU041952	three prime repair exonuclease 1	protein-coding	37.0	42.0	26.5	18.0	53.0	20.5
Merged-chr7-19459846-2	chr7	19459346	19460346	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1352.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34758730-4	chr18	34758247	34759247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175104)	promoter-TSS (NM_175104)	-103.0	NM_175104	66306.0	Mm.29424	NM_175104	ENSMUSG00000034300	Fam53c	2810012G03Rik|Gm21179	family with sequence similarity 53, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91527256-4	chr16	91526739	91527739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_105786)	TTS (NR_105786)	305.0	NR_105786	102465190.0		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	1.0	1.0	8.0	0.0	0.5	8.5
Merged-chr10-95677719-4	chr10	95677212	95678212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger12|DNA|TcMar-Tigger	-113566.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-9087099-4	chr5	9086588	9087588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13649.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46573045-4	chr18	46572547	46573547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173394, intron 1 of 2)	L2|LINE|L2	1486.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126675916-2	chr7	126675416	126676416	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133670, intron 1 of 7)	intron (NM_133670, intron 1 of 7)	502.0	NM_133670	20887.0	Mm.368982	NM_133670	ENSMUSG00000030711	Sult1a1	AI266890|PST|ST1A1|ST1A4|Stp|Stp1|mSTp1	sulfotransferase family 1A, phenol-preferring, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-8805997-4	chr5	8805481	8806481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011075, intron 3 of 27)	intron (NM_011075, intron 3 of 27)	-7458.0	NR_152132	330031.0	Mm.389059	NR_152132		Gm5106	A230021K14|EG330031	predicted gene 5106	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-71356329-4	chr10	71355800	71356800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027184, intron 1 of 5)	L1MC4|LINE|L1	8537.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153415171-4	chr1	153414675	153415675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033736)	promoter-TSS (NR_033736)	-942.0	NR_033736	626058.0	Mm.31556	NM_001177359		E330020D12Rik	EG626058|F430003O07Rik|Gm6648	Riken cDNA E330020D12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116507584-4	chr4	116507139	116508139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008389)	promoter-TSS (NM_008389)	90.0	NM_008389	16351.0	Mm.1350	NM_008389	ENSMUSG00000028696	Ipp	D4Jhu8|Mipp	IAP promoted placental gene	protein-coding	3.0	61.0	40.0	15.5	71.0	35.5
Merged-chr19-5804498-2	chr19	5803998	5804998	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1826.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-42897321-4	chr16	42896822	42897822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040402, intron 1 of 3)	intron (NR_040402, intron 1 of 3)	-10323.0	NM_001285805	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-75521504-4	chr1	75521020	75522020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027886)	promoter-TSS (NM_027886)	-9.0	NM_027886	71728.0	Mm.312650	NM_027886	ENSMUSG00000026213	Stk11ip	1200014D22Rik|BB131189|LIP1|LKB1IP	serine/threonine kinase 11 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33892186-4	chr16	33891696	33892696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 5 of 14)	intron (NM_001145884, intron 5 of 14)	62531.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137755470-2	chr5	137754970	137755970	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023910, intron 3 of 4)	intron (NM_023910, intron 3 of 4)	9501.0	NM_029805	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123394626-4	chr5	123394122	123395122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177582)	promoter-TSS (NM_177582)	-176.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-14098777-4	chr14	14098287	14099287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139227, intron 10 of 11)	intron (NM_139227, intron 10 of 11)	22117.0	NM_025550	66413.0	Mm.27591	NM_025550	ENSMUSG00000021737	Psmd6	2400006A19Rik	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51931964-4	chr11	51931459	51932459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-35672.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-52419565-4	chr10	52419070	52420070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030250, intron 1 of 4)	intron (NM_030250, intron 1 of 4)	2023.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84764968-2	chr12	84764468	84765468	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 2 of 3)	intron (NM_023409, intron 2 of 3)	8144.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98612115-4	chr10	98611554	98612554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-260187.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125601924-4	chr7	125601436	125602436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1493.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	165.0	238.0	233.0	54.5	142.5	99.5
Merged-chr8-120104871-4	chr8	120104363	120105363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3391.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-114387993-4	chr13	114387466	114388466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010887, exon 1 of 5)	exon (NM_010887, exon 1 of 5)	128.0	NM_010887	17993.0	Mm.253142	NM_010887	ENSMUSG00000021764	Ndufs4	6720411N02Rik|C1-18k	NADH dehydrogenase (ubiquinone) Fe-S protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90940937-4	chr2	90940401	90941401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198683, intron 1 of 13)	CpG	504.0	NM_017368	13046.0	Mm.29495	NM_017368	ENSMUSG00000005506	Celf1	1600010O03Rik|AA407467|Brunol2|CUG-BP|CUG-BP1|CUGBP|Cugbp1|D2Wsu101e|HNAB50|NAB50	CUGBP, Elav-like family member 1	protein-coding	16.5	30.0	52.0	16.0	48.0	60.0
Merged-chr17-65718789-4	chr17	65718275	65719275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 2 of 6)	MTC|LTR|ERVL-MaLR	53977.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106477153-4	chr9	106476658	106477658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145620)	promoter-TSS (NM_145620)	-151.0	NM_145620	27966.0	Mm.239997	NM_145620	ENSMUSG00000041506	Rrp9	55kDa|D19435|D9Wsu10e|Rnu3ip2|U3-55k	RRP9, small subunit (SSU) processome component, homolog (yeast)	protein-coding	37.5	65.5	52.0	28.0	45.0	43.0
Merged-chr5-77468652-4	chr5	77468157	77469157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131050, exon 2 of 2)	non-coding (NR_131050, exon 2 of 2)	3169.0	NR_131050	69370.0	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37338394-4	chr10	37337936	37338936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-199510.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90048919-4	chr7	90048427	90049427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_110364, exon 6 of 6)	non-coding (NR_110364, exon 6 of 6)	19768.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	66.5	108.5	114.5	43.5	103.0	93.0
Merged-chr1-58774115-4	chr1	58773633	58774633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21241.0	NM_009812	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	3.5	13.0	7.0	3.0	16.0	7.5
Merged-chr14-25565870-2	chr14	25565370	25566370	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 3 of 23)	intron (NM_183208, intron 3 of 23)	-20934.0	NR_033492	77592.0	Mm.444871	NM_175264		4931406H21Rik	-	RIKEN cDNA 4931406H21 gene	ncRNA	0.0	0.0	4.0	1.0	3.0	5.5
Merged-chr9-63602561-4	chr9	63602055	63603055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311098)	promoter-TSS (NM_001311098)	-62.0	NM_001311098	78250.0	Mm.444612	NM_030068	ENSMUSG00000037801	Iqch	4921504K03Rik	IQ motif containing H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17405903-4	chr16	17405391	17406391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023348)	promoter-TSS (NM_023348)	-109.0	NM_023348	67474.0	Mm.271992	NM_023348	ENSMUSG00000022765	Snap29	1300018G05Rik|AI891940|AU020222|BB131856|Gs32	synaptosomal-associated protein 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-75917852-4	chr16	75917339	75918339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8573.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129829937-4	chr4	129829387	129830387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	9179.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	59.0	219.5	153.0	63.5	209.5	89.5
Merged-chr8-117157905-4	chr8	117157403	117158403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081151)	promoter-TSS (NM_001081151)	-232.0	NM_001081151	209239.0	Mm.132992	NM_001081151	ENSMUSG00000052557	Gan	A330045G18|gigaxonin	giant axonal neuropathy	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-17058524-4	chr7	17058003	17059003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162950, intron 1 of 14)	intron (NM_001162950, intron 1 of 14)	-1824.0	NM_016868	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	37.0	45.0	28.0	27.5	43.5	29.0
Merged-chr10-6718105-2	chr10	6717605	6718605	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40488.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	19.5	31.0	25.0	19.5	29.0	24.5
Merged-chr6-129234118-4	chr6	129233633	129234633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040268, intron 2 of 3)	intron (NR_040268, intron 2 of 3)	3912.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	11.5	44.0	30.5	21.0	29.5	16.5
Merged-chr18-70621761-2	chr18	70621261	70622261	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010773, intron 5 of 6)	intron (NM_010773, intron 5 of 6)	53469.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61548769-4	chr14	61548268	61549268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310603, intron 2 of 3)	ORR1F|LTR|ERVL-MaLR	8118.0	NM_025697	66674.0	Mm.282706	NM_025697	ENSMUSG00000021930	Spryd7	6330409N04Rik|Clld6	SPRY domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23676045-4	chr17	23675542	23676542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_181821)	TTS (NM_181821)	1407.0	NM_001161746	27279.0	Mm.28518	NM_013749	ENSMUSG00000023905	Tnfrsf12a	AI255180|C87282|Fn14|HPIP|TWEAK-R|TweakR	tumor necrosis factor receptor superfamily, member 12a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126272380-4	chr7	126271882	126272882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145587)	promoter-TSS (NM_145587)	-114.0	NM_145587	104175.0	Mm.29660	NM_145587	ENSMUSG00000042978	Sbk1	Sbk	SH3-binding kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142494086-4	chr3	142493577	142494577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2857.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43664197-4	chr7	43663689	43664689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4028.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38078274-4	chr15	38077757	38078757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001112721, intron 1 of 58)	CpG	597.0	NM_001112721	70790.0	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182923027-4	chr1	182922546	182923546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31742.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120531964-4	chr1	120531473	120532473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26949.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	7.5	15.5	8.5	1.0	3.0	0.5
Merged-chr2-120571402-3	chr2	120570938	120571938	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009222, intron 1 of 7)	ORR1D1|LTR|ERVL-MaLR	3767.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	12.5	40.5	29.0	29.0	54.5	29.5
Merged-chr3-37420304-4	chr3	37419818	37420818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291044)	promoter-TSS (NM_001291044)	368.0	NM_021343	57815.0	Mm.172679	NM_021343	ENSMUSG00000027722	Spata5	2510048F20Rik|C78064|Spaf	spermatogenesis associated 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4060838-4	chr19	4060337	4061337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-1390.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147860597-4	chr5	147860107	147861107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025624)	promoter-TSS (NM_025624)	-21.0	NM_025624	66537.0	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	36.5	31.5	43.0	18.0	41.0	36.0
Merged-chr10-20148344-2	chr10	20147844	20148844	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008635)	promoter-TSS (NM_008635)	-576.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr7-132242138-2	chr7	132241638	132242638	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029935, intron 6 of 7)	MER77B|LTR|ERVL	-73526.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-105377209-4	chr13	105376710	105377710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66483.0	NM_008308	15550.0	Mm.4716	NM_008308	ENSMUSG00000021721	Htr1a	Gpcr18	5-hydroxytryptamine (serotonin) receptor 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41555433-4	chr4	41554904	41555904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027993, intron 1 of 5)	intron (NM_027993, intron 1 of 5)	14123.0	NM_001159583	71901.0	Mm.39215	NM_027993	ENSMUSG00000028439	Fam219a	2310028H24Rik	family with sequence similarity 219, member A	protein-coding	55.0	146.5	130.5	5.0	12.0	16.0
Merged-chr18-58567998-4	chr18	58567498	58568498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081072, intron 1 of 9)	Lx7|LINE|L1	11758.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	40.0	100.5	42.0	33.0	85.5	69.5
Merged-chr18-36515822-4	chr18	36515320	36516320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010415)	promoter-TSS (NM_010415)	-15.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	0.0	4.0	15.0	4.5	8.5	0.5
Merged-chr6-97486180-4	chr6	97485681	97486681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	1639.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	152.5	364.5	285.5	120.0	383.5	226.0
Merged-chr2-130450343-4	chr2	130449832	130450832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163688)	promoter-TSS (NM_001163688)	54.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	7.0	5.0	8.5	5.0	50.5	28.5
Merged-chr10-10558239-4	chr10	10557748	10558748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026405)	promoter-TSS (NM_026405)	-41.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110681348-4	chr9	110680828	110681828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	24825.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52950376-4	chr2	52949862	52950862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	92494.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115192349-4	chr11	115191863	115192863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033393, intron 2 of 9)	intron (NM_001033393, intron 2 of 9)	4876.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	166.0	353.0	278.0	95.5	174.5	144.5
Merged-chr11-22287164-4	chr11	22286663	22287663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153078)	promoter-TSS (NM_153078)	-368.0	NM_001252515	216565.0	Mm.491265	NM_153078	ENSMUSG00000042302	Ehbp1	AF424697|Flj21950|NACSIN	EH domain binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120952274-4	chr4	120951733	120952733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005788)	promoter-TSS (NM_001005788)	-532.0	NM_001005788	381549.0	Mm.331840	NM_001005788	ENSMUSG00000064141	Zfp69	Gm1029|Krab2|Zfp63	zinc finger protein 69	protein-coding	29.5	86.5	69.5	42.0	102.5	76.0
Merged-chr19-32388551-4	chr19	32388056	32389056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033198)	promoter-TSS (NR_033198)	-44.0	NM_144792	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	45.0	82.5	102.5	42.5	68.0	59.0
Merged-chr19-6236330-4	chr19	6235832	6236832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198168)	promoter-TSS (NM_198168)	-492.0	NM_198168	225849.0	Mm.118076	NM_198168	ENSMUSG00000024777	Ppp2r5b	B'beta|BC026670	protein phosphatase 2, regulatory subunit B', beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-144003015-4	chr5	144002522	144003522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177682, intron 7 of 14)	intron (NM_177682, intron 7 of 14)	11831.0	NM_177682	231874.0	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18767209-4	chr2	18766723	18767723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6361.0	NR_126079	100041479.0	Mm.393659	NR_126079	ENSMUSG00000092353	Gm3363	-	predicted gene 3363	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44139775-4	chr16	44139292	44140292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028108)	promoter-TSS (NM_028108)	1.0	NM_001347239	72117.0	Mm.278726	NM_028108	ENSMUSG00000022698	Naa50	2600005K24Rik|2810441M03Rik|AW112078|Mak3|Mak3p|Nat13|Nat5|San	N(alpha)-acetyltransferase 50, NatE catalytic subunit	protein-coding	30.5	113.0	120.5	73.5	128.5	105.0
Merged-chr1-180849730-4	chr1	180849240	180850240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1411.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-56793239-4	chr10	56792740	56793740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	361259.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115521998-4	chr5	115521501	115522501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	L1M5|LINE|L1	15325.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	40.5	136.5	78.0	75.0	134.0	101.5
Merged-chr15-27664329-4	chr15	27663828	27664828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242424, intron 4 of 8)	intron (NM_001242424, intron 4 of 8)	17214.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59974278-3	chr10	59973772	59974772	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22502.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-50634391-4	chr10	50633889	50634889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 4 of 41)	L1M4|LINE|L1	41720.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148087522-4	chr4	148087023	148088023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301281, intron 1 of 4)	intron (NM_001301281, intron 1 of 4)	541.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120378782-4	chr11	120378278	120379278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027980)	promoter-TSS (NM_027980)	-32.0	NM_027980	71885.0	Mm.274890	NM_027980	ENSMUSG00000025384	Faap100	2310003H01Rik	Fanconi anemia core complex associated protein 100	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71289309-4	chr8	71288815	71289815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 1 of 39)	intron (NM_001142322, intron 1 of 39)	16601.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	112.0	202.5	180.5	111.0	250.5	184.5
Merged-chr17-88613339-1	chr17	88612839	88613839	+	1000.0	f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-13216.0	NM_029858	77057.0	Mm.482203	NM_029858	ENSMUSG00000033855	Ston1	4921524J06Rik|C86231|Salf|Sblf	stonin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr8-76899690-2	chr8	76899185	76900185	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NR_028579, intron 1 of 1)	CpG	936.0	NR_028579	102640923.0	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	-	predicted gene 10649	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134928741-4	chr6	134928247	134929247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037955)	promoter-TSS (NR_037955)	-345.0	NR_037956	381822.0	Mm.5935	NR_037955	ENSMUSG00000098318	Lockd	1190002F15Rik|AI120476|Droc	lncRNA downstream of Cdkn1b	ncRNA	18.0	66.0	46.0	13.0	48.5	51.0
Merged-chr5-150601002-4	chr5	150600497	150601497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001362416, exon 8 of 8)	3' UTR (NM_001362416, exon 8 of 8)	-6472.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58264797-4	chr15	58264287	58265287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-49895.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101424306-2	chr11	101423806	101424806	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172566)	promoter-TSS (NM_172566)	-779.0	NM_172566	217201.0	Mm.305941	NM_172566	ENSMUSG00000035007	Rundc1	AW125546|D930024B17	RUN domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31220837-3	chr6	31220382	31221382	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040260, intron 1 of 5)	intron (NR_040260, intron 1 of 5)	531.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123058980-3	chr5	123058483	123059483	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11967.0	NM_001347456	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	9.5	6.0	10.0	28.5	20.0	19.5
Merged-chr5-111178361-2	chr5	111177868	111178868	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	-152329.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62185243-2	chr10	62184743	62185743	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_197996)	TTS (NM_197996)	8984.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105495349-4	chr5	105494856	105495856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24115.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	22.5	5.0	13.0	27.5	100.0	53.5
Merged-chr12-25251564-2	chr12	25251064	25252064	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122390.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.0	8.5	4.5	0.0	0.0	5.5
Merged-chr3-142394263-4	chr3	142393752	142394752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190854, intron 1 of 12)	intron (NM_001190854, intron 1 of 12)	1444.0	NM_001190853	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	20.0	37.0	34.5	9.5	64.0	34.5
Merged-chr11-117091997-4	chr11	117091489	117092489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14641.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35586186-4	chr7	35585685	35586685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145840)	promoter-TSS (NM_145840)	-62.0	NM_145633	245886.0	Mm.272620	NM_145633	ENSMUSG00000034867	Ankrd27	AA408090|BC016493|D330003H11Rik|Varp	ankyrin repeat domain 27 (VPS9 domain)	protein-coding	6.0	2.5	1.0	10.0	8.0	2.5
Merged-chr13-51405798-2	chr13	51405298	51406298	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2820.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135686626-4	chr5	135686137	135687137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2508.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	54.0	84.5	89.5	34.0	96.5	69.0
Merged-chr8-121547287-2	chr8	121546787	121547787	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045903, exon 3 of 3)	non-coding (NR_045903, exon 3 of 3)	2899.0	NR_045903	72259.0	Mm.396206	NR_045903	ENSMUSG00000097424	1700030M09Rik	-	RIKEN cDNA 1700030M09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120930197-3	chr11	120929665	120930665	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027745, intron 1 of 18)	RLTR33|LTR|ERVK	2707.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128172695-4	chr7	128172191	128173191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1255.0	NM_001029872	381924.0	Mm.334257	NM_001029872	ENSMUSG00000070369	Itgad	Cd11d	integrin, alpha D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3164186-2	chr11	3163687	3164687	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 9 of 32)	B2_Mm2|SINE|B2	29276.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16400188-4	chr7	16399698	16400698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198631)	promoter-TSS (NM_198631)	-998.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69156159-4	chr3	69155655	69156655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126533, intron 2 of 2)	B4A|SINE|B4	24922.0	NR_126533	381452.0	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	163.0	266.5	225.5	132.0	306.5	190.0
Merged-chr11-29308324-4	chr11	29307815	29308815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-61043.0	NM_025740	216618.0	Mm.128663	NM_025740	ENSMUSG00000020462	Cfap36	2300003H10|4931428D14Rik|Ccdc104	cilia and flagella associated protein 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-26360527-4	chr15	26360040	26361040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310774, intron 2 of 2)	intron (NM_001310774, intron 2 of 2)	51492.0	NM_001310774	211147.0	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73149796-4	chr15	73149299	73150299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	35148.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51367489-4	chr11	51366997	51367997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153393, intron 2 of 28)	MLT1C|LTR|ERVL-MaLR	77577.0	NM_153393	237759.0	Mm.154093	NM_153393	ENSMUSG00000063564	Col23a1	2810458L13Rik|AI429655	collagen, type XXIII, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111732187-4	chr8	111731676	111732676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198839)	promoter-TSS (NM_001198839)	-40.0	NM_001198839	12927.0	Mm.3758	NM_009954	ENSMUSG00000031955	Bcar1	AI385681|Cas|Crkas	breast cancer anti-estrogen resistance 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113531625-4	chr6	113531123	113532123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175101)	promoter-TSS (NM_175101)	15.0	NM_175101	66087.0	Mm.275989	NM_175101	ENSMUSG00000030286	Emc3	0610039A15Rik|AI225901|AW260416|Pob|Tmem111	ER membrane protein complex subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35983688-4	chr12	35983174	35984174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9251.0	NM_011783	23795.0	Mm.7244	NM_011783	ENSMUSG00000020581	Agr2	Agr2h|Gob-4|HAG-2|XAG-2|mAG-2	anterior gradient 2	protein-coding	2.0	3.5	0.0	0.0	0.0	0.5
Merged-chr18-76930042-4	chr18	76929535	76930535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025409)	promoter-TSS (NM_025409)	8.0	NM_025409	66191.0	Mm.28593	NM_025409	ENSMUSG00000090000	Ier3ip1	1110057H19Rik|AI644142|AL022842|AL022863|AV026606	immediate early response 3 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81192707-4	chr10	81192216	81193216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007828, exon 8 of 8)	exon (NM_007828, exon 8 of 8)	-1975.0	NR_015477	69678.0	Mm.81562	NR_015477		Atcayos	2310050B05Rik	ataxia, cerebellar, Cayman type, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53137555-4	chr15	53137036	53138036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	L2c|LINE|L2	208647.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161482392-4	chr1	161481871	161482871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12286.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	1.0	17.5	6.5	14.0	2.5	3.0
Merged-chr15-38528103-4	chr15	38527585	38528585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	-8819.0	NM_018745	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27703780-2	chr15	27703280	27704280	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22238.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6452371-4	chr19	6451859	6452859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 5 of 22)	intron (NM_001205234, intron 5 of 22)	33621.0	NM_001205234	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-108312736-4	chr5	108312211	108313211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081234)	promoter-TSS (NM_001081234)	-214.0	NM_001081234	433931.0	Mm.319881	NM_001081234	ENSMUSG00000029263	Pigg	Gpi7	phosphatidylinositol glycan anchor biosynthesis, class G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100200222-5	chr12	100199724	100200724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313934)	promoter-TSS (NM_001313934)	80.0	NM_001313934	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27347517-2	chr2	27347017	27348017	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	80091.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58743551-4	chr1	58743052	58744052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 7 of 8)	intron (NM_001355056, intron 7 of 8)	13000.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-126940067-4	chr6	126939555	126940555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138594)	promoter-TSS (NM_138594)	89.0	NM_138594	28040.0	Mm.44228	NM_138594	ENSMUSG00000030347	D6Wsu163e	C12orf4	DNA segment, Chr 6, Wayne State University 163, expressed	protein-coding	11.5	62.0	23.5	21.5	38.5	32.0
Merged-chr16-11017988-4	chr16	11017468	11018468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9070.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74238712-2	chr1	74238212	74239212	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 2 of 10)	PB1D11|SINE|Alu	2195.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-43772864-4	chr2	43772375	43773375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 1 of 14)	intron (NM_001301831, intron 1 of 14)	24051.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122400838-4	chr5	122400341	122401341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019824, intron 2 of 6)	intron (NM_019824, intron 2 of 6)	8963.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-60501275-4	chr3	60500812	60501812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001253710, exon 1 of 8)	5' UTR (NM_001253710, exon 1 of 8)	133.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117328759-4	chr2	117328244	117329244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 2 of 16)	intron (NM_011246, intron 2 of 16)	14133.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143021957-4	chr7	143021454	143022454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_110354, exon 5 of 5)	non-coding (NR_110354, exon 5 of 5)	16295.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	48.0	194.5	114.0	35.0	160.5	114.0
Merged-chr6-31083207-2	chr6	31082707	31083707	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20114.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95849945-3	chr13	95849447	95850447	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	41975.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	25.0	55.0	41.0	15.0	9.0	5.5
Merged-chr7-127573241-4	chr7	127572743	127573743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026888)	promoter-TSS (NM_026888)	-105.0	NM_001360741	68961.0	Mm.274473	NM_026888	ENSMUSG00000030815	Phkg2	1500017I02Rik	phosphorylase kinase, gamma 2 (testis)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7014301-2	chr19	7013801	7014801	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362399, intron 4 of 14)	intron (NM_001362399, intron 4 of 14)	5168.0	NM_153795	108101.0	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104269457-4	chr9	104268954	104269954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6524.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88510152-4	chr3	88509648	88510648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6796.0	NM_001002011	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26977694-3	chr8	26977189	26978189	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101502, intron 1 of 1)	CpG	353.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121421339-4	chr11	121420852	121421852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181420)	promoter-TSS (NM_181420)	-21.0	NM_181420	238024.0	Mm.117394	NM_181420	ENSMUSG00000039253	Fn3krp	FN3K-RP	fructosamine 3 kinase related protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130728962-2	chr2	130728449	130729449	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029432, intron 28 of 36)	intron (NM_029432, intron 28 of 36)	-31430.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	39.0	92.5	49.5	47.0	109.0	66.5
Merged-chr17-24426628-4	chr17	24426127	24427127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010023)	promoter-TSS (NM_010023)	-56.0	NM_010023	13177.0	Mm.291743	NM_010023	ENSMUSG00000024132	Eci1	Dci|eci	enoyl-Coenzyme A delta isomerase 1	protein-coding	13.0	36.0	12.5	23.0	37.0	26.0
Merged-chr7-25681069-4	chr7	25680544	25681544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172148)	promoter-TSS (NM_172148)	-114.0	NM_172148	232987.0	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120567679-4	chr6	120567172	120568172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045733, intron 2 of 3)	intron (NR_045733, intron 2 of 3)	12876.0	NR_045733	73505.0	Mm.416867	NR_045733		1700072O05Rik	-	RIKEN cDNA 1700072O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46789612-4	chr8	46789095	46790095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	49850.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90232998-4	chr9	90232506	90233506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	37763.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153558628-4	chr2	153558144	153559144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28673.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74661657-4	chr1	74661162	74662162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001014974)	promoter-TSS (NM_001014974)	-92.0	NM_001014974	67534.0	Mm.260714	NM_001014974	ENSMUSG00000033257	Ttll4	4632407P03Rik|AI451681|mKIAA0173	tubulin tyrosine ligase-like family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64794152-4	chr5	64793673	64794673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9350.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	7.5	17.5	9.5	2.5	5.0	4.5
Merged-chr1-193201583-4	chr1	193201083	193202083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153137)	promoter-TSS (NM_153137)	-37.0	NM_153137	215243.0	Mm.261259	NM_153137	ENSMUSG00000037318	Traf3ip3	6030423D04Rik|AI115021|T3jam	TRAF3 interacting protein 3	protein-coding	8.5	10.5	12.5	8.5	10.5	12.5
Merged-chr4-83328212-4	chr4	83327732	83328732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4043.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0.0	11.5	3.5	0.0	1.0	6.0
Merged-chr18-60481182-3	chr18	60480677	60481677	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134133, intron 1 of 1)	intron (NM_134133, intron 1 of 1)	20806.0	NM_134133	106878.0	Mm.273197	NM_134133	ENSMUSG00000038059	Smim3	2010002N04Rik|AI195350|AW561905|Nid67|cI-41	small integral membrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40726903-2	chr19	40726403	40727403	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 6 of 9)	intron (NM_001304721, intron 6 of 9)	67133.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126163247-2	chr4	126162747	126163747	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162533)	promoter-TSS (NM_001162533)	94.0	NM_001162533	66938.0	Mm.29813	NM_025856	ENSMUSG00000073758	Sh3d21	1700029G01Rik|AU019788	SH3 domain containing 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78362537-4	chr17	78362041	78363041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 13 of 16)	intron (NM_015800, intron 13 of 16)	55611.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-140998014-4	chr7	140997507	140998507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12737.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182489929-4	chr1	182489418	182490418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009794, intron 6 of 20)	intron (NM_009794, intron 6 of 20)	27692.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5473880-4	chr19	5473381	5474381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164352)	promoter-TSS (NM_001164352)	-809.0	NM_021474	58859.0	Mm.276367	NM_021474	ENSMUSG00000024909	Efemp2	0610011K11Rik|Fbln4|MBP1	epidermal growth factor-containing fibulin-like extracellular matrix protein 2	protein-coding	2.0	2.0	16.5	6.5	20.0	9.0
Merged-chr7-119720720-4	chr7	119720185	119721185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145585, exon 2 of 5)	exon (NM_145585, exon 2 of 5)	2934.0	NM_145585	233802.0	Mm.26392	NM_145585	ENSMUSG00000030942	Thumpd1	6330575P11Rik	THUMP domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-56106838-4	chr10	56106341	56107341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163833)	promoter-TSS (NM_001163833)	-76.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40723206-4	chr4	40722679	40723679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_077221)	promoter-TSS (NR_077221)	249.0	NM_001164672	15502.0	Mm.27897	NM_008298	ENSMUSG00000028410	Dnaja1	HSJ-2|Hsj2|Nedd7	DnaJ heat shock protein family (Hsp40) member A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71195892-4	chr17	71195378	71196378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	-8776.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	80.5	109.5	72.0	16.5	79.5	50.5
Merged-chr12-111732711-4	chr12	111732241	111733241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163388, intron 4 of 5)	intron (NM_001163388, intron 4 of 5)	19472.0	NM_026511	68020.0	Mm.425762	NM_026511	ENSMUSG00000037787	Apopt1	1700081D05Rik|2810002N01Rik|Apop-1|Apop1	apoptogenic, mitochondrial 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-33324793-4	chr14	33324300	33325300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 4 of 10)	intron (NM_153800, intron 4 of 10)	86224.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-118386786-3	chr13	118386302	118387302	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021556, exon 1 of 5)	exon (NM_021556, exon 1 of 5)	450.0	NM_021556	59054.0	Mm.143810	NM_021556	ENSMUSG00000021731	Mrps30	2610020A16Rik|AA968347|PAP|Pdcd9	mitochondrial ribosomal protein S30	protein-coding	20.5	32.5	56.0	25.5	45.5	35.0
Merged-chr1-154260626-1	chr1	154260126	154261126	+	1000.0	f0_balb.idr	intron (NR_108050, intron 1 of 2)	intron (NR_108050, intron 1 of 2)	-3720.0	NR_040629	78112.0	Mm.401935	NR_040629	ENSMUSG00000099933	4930452N14Rik	-	RIKEN cDNA 4930452N14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119790874-4	chr13	119790365	119791365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028245)	promoter-TSS (NM_028245)	-59.0	NM_001302549	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55077994-1	chr12	55077494	55078494	+	1000.0	f1_balb.idr	intron (NR_155260, intron 1 of 7)	MLTR18D_MM|LTR|ERVK	2116.0	NR_030764	72658.0	Mm.434380	NM_028314	ENSMUSG00000062198	2700097O09Rik	AW552125	RIKEN cDNA 2700097O09 gene	protein-coding	0.5	0.0	0.0	0.0	6.0	0.0
Merged-chr2-164859836-4	chr2	164859354	164860354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-2146.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	11.0	53.0	32.0	49.5	70.5	37.0
Merged-chr15-76351216-4	chr15	76350728	76351728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164608)	promoter-TSS (NM_001164608)	-66.0	NM_001164607	68877.0	Mm.289680	NM_026859	ENSMUSG00000022553	Maf1	1110068E11Rik|AU042856	MAF1 homolog, negative regulator of RNA polymerase III	protein-coding	14.5	29.5	27.0	34.5	38.0	51.5
Merged-chr2-167007054-4	chr2	167006561	167007561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8252.0	NM_153065	228889.0	Mm.295031	NM_153065	ENSMUSG00000017999	Ddx27	C86129	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46650493-4	chr17	46650003	46651003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001316742)	TTS (NM_001316742)	165.0	NM_025611	66515.0	Mm.329078	NM_025611	ENSMUSG00000038545	Cul7	2510004L20Rik|AA409809|C230011P08Rik|p185|p193	cullin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119174294-4	chr4	119173795	119174795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183140)	promoter-TSS (NM_183140)	-100.0	NM_001145936	195522.0	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	36.0	82.5	88.0	19.0	41.0	30.5
Merged-chr4-132306177-4	chr4	132305678	132306678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-2500.0	NR_029468	100039864.0	Mm.258912	NR_029468	ENSMUSG00000086290	Snhg12	2310005L22Rik	small nucleolar RNA host gene 12	ncRNA	0.0	3.0	1.0	21.5	71.5	27.5
Merged-chr19-6235898-4	chr19	6235395	6236395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198168)	promoter-TSS (NM_198168)	-55.0	NM_198168	225849.0	Mm.118076	NM_198168	ENSMUSG00000024777	Ppp2r5b	B'beta|BC026670	protein phosphatase 2, regulatory subunit B', beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66223824-4	chr14	66223325	66224325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-10001.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103115406-4	chr11	103114911	103115911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138753)	promoter-TSS (NM_138753)	-914.0	NM_138753	192231.0	Mm.8763	NM_138753	ENSMUSG00000048878	Hexim1	7330426E13Rik|CLP-1|Clp1|HIS1	hexamethylene bis-acetamide inducible 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-38778701-4	chr12	38778227	38779227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1355.0	NM_001347379	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59292864-2	chr9	59292364	59293364	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359282, intron 1 of 6)	B1_Mur4|SINE|Alu	1292.0	NM_028121	72141.0	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136962155-4	chr5	136961663	136962663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025562)	promoter-TSS (NM_025562)	86.0	NM_025562	66437.0	Mm.25849	NM_025562	ENSMUSG00000019054	Fis1	2010003O14Rik|Ttc11	fission, mitochondrial 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120325811-4	chr14	120325322	120326322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	19370.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	10.5	31.0	22.0	14.0	36.0	29.0
Merged-chr8-123254192-4	chr8	123253698	123254698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020497)	promoter-TSS (NM_020497)	3.0	NM_020497	57247.0	Mm.379084	NM_020497	ENSMUSG00000001065	Zfp276	AW048709|D8Ertd370e|D8Ertd377e|Znf276	zinc finger protein (C2H2 type) 276	protein-coding	20.0	25.5	22.5	0.0	6.0	3.5
Merged-chr9-105481442-2	chr9	105480942	105481942	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253831, intron 1 of 26)	intron (NM_001253831, intron 1 of 26)	13691.0	NM_175025	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	0.0	1.5	0.5	0.0	2.0	1.0
Merged-chr6-100357163-4	chr6	100356643	100357643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-69785.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95037185-4	chr8	95036695	95037695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173036, intron 8 of 11)	intron (NM_173036, intron 8 of 11)	-17908.0	NM_001042715	330830.0	Mm.277112	NM_001042715	ENSMUSG00000031786	Drc7	Ccdc135|Gm770|SRG-L|SRG-S	dynein regulatory complex subunit 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53737221-4	chr11	53736709	53737709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16415.0	NM_010558	16191.0	Mm.4461	NM_010558	ENSMUSG00000036117	Il5	Il-5	interleukin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17749190-4	chr6	17748699	17749699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083315)	promoter-TSS (NM_001083315)	29.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125350679-4	chr6	125350183	125351183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011609, intron 1 of 9)	intron (NM_011609, intron 1 of 9)	960.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	112.0	183.5	165.0	50.5	122.0	126.0
Merged-chr16-73875169-4	chr16	73874667	73875667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	466900.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134066295-4	chr6	134065792	134066792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007961, intron 1 of 7)	MLT2B2|LTR|ERVL	30592.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80785032-2	chr10	80784532	80785532	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199322, intron 17 of 27)	intron (NM_199322, intron 17 of 27)	13594.0	NM_023900	78670.0	Mm.41479	NM_023900	ENSMUSG00000035278	Plekhj1	9530063M10Rik	pleckstrin homology domain containing, family J member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131204699-4	chr2	131204206	131205206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5654.0	NM_001291032	69596.0	Mm.2937	NM_027129	ENSMUSG00000068264	Ap5s1	0610038L13Rik|2310035K24Rik|AW060727|sigma5	adaptor-related protein 5 complex, sigma 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103566268-4	chr2	103565781	103566781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178890)	promoter-TSS (NM_178890)	-29.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-64770919-4	chr16	64770374	64771374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026273)	promoter-TSS (NM_026273)	65.0	NM_026273	67609.0	Mm.212157	NM_026273	ENSMUSG00000059920	4930453N24Rik	AI649104|din	RIKEN cDNA 4930453N24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141547534-4	chr4	141547012	141548012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030695, exon 1 of 1)	non-coding (NR_030695, exon 1 of 1)	1350.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	163.0	351.0	276.0	86.0	290.5	164.0
Merged-chr15-76523837-2	chr15	76523337	76524337	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1708.0	NM_130893	170729.0	Mm.218747	NM_130893	ENSMUSG00000048385	Scrt1	-	scratch family zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-104353440-4	chr7	104352943	104353943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175677)	promoter-TSS (NM_175677)	-85.0	NM_001146007	319236.0	Mm.425502	NM_175677	ENSMUSG00000057143	Trim12c	9230105E10Rik|Trim12-2	tripartite motif-containing 12C	protein-coding	77.0	311.5	138.0	119.0	317.5	219.0
Merged-chr7-104446522-4	chr7	104446022	104447022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357467)	promoter-TSS (NM_001357467)	-397.0	NM_001357467	20128.0	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	16.0	44.5	41.5	16.0	41.0	37.5
Merged-chr8-70510456-4	chr8	70509965	70510965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348229)	promoter-TSS (NM_001348229)	-21.0	NR_151735	78183.0	Mm.297372	NR_151735		4930522P08Rik	-	RIKEN cDNA 4930522P08 gene	ncRNA	132.0	245.0	224.0	117.5	265.0	192.0
Merged-chr4-20033508-4	chr4	20033018	20034018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	-8534.0	NM_010281	14590.0	Mm.20461	NM_010281	ENSMUSG00000073987	Ggh	gamma-GH	gamma-glutamyl hydrolase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35516921-4	chr17	35516409	35517409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146248)	promoter-TSS (NM_146248)	-85.0	NM_025674	106795.0	Mm.11434	NM_025674	ENSMUSG00000050410	Tcf19	5730403J10Rik|AW495861	transcription factor 19	protein-coding	0.0	6.0	3.5	1.5	2.0	1.0
Merged-chr16-32165485-4	chr16	32164997	32165997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347182)	promoter-TSS (NM_001347182)	97.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-176853419-4	chr1	176852944	176853944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 8 of 18)	intron (NM_001357390, intron 8 of 18)	-17311.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	21.0	14.5	17.5	19.5	28.5	31.5
Merged-chr11-82023907-4	chr11	82023424	82024424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11653.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140597342-4	chr5	140596814	140597814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10027.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24416264-4	chr5	24415751	24416751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001310474, exon 4 of 10)	exon (NM_001310474, exon 4 of 10)	2800.0	NM_001310474	171209.0	Mm.299636	NM_183000	ENSMUSG00000038276	Asic3	AW742291|Accn3|DRASIC|SLNAC1|TNAC1	acid-sensing (proton-gated) ion channel 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34254911-4	chr13	34254418	34255418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	90264.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107254533-2	chr4	107254033	107255033	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029985)	promoter-TSS (NM_029985)	630.0	NM_028394	72938.0	Mm.21787	NM_028394	ENSMUSG00000063172	Hspb11	2900042B11Rik|IFT25|PP25	heat shock protein family B (small), member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19002973-4	chr7	19002457	19003457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1108.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-53475684-3	chr17	53475150	53476150	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3584.0	NM_025887	271457.0	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101949448-4	chr5	101948947	101949947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 9 of 66)	intron (NM_172882, intron 9 of 66)	120474.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	8.0	37.5	23.0	8.0	37.5	24.5
Merged-chr10-80223331-4	chr10	80222831	80223831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	RLTR13C2|LTR|ERVK	-3267.0	NM_023431	68114.0	Mm.273418	NM_023431	ENSMUSG00000020156	Mum1	2610019J09|9430059D04Rik|UBE-1C2	melanoma associated antigen (mutated) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25789402-4	chr14	25788911	25789911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20555.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36365215-4	chr18	36364723	36365723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081365, intron 1 of 2)	intron (NM_001081365, intron 1 of 2)	16599.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19308035-7	chr7	19307439	19308439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347586, intron 1 of 4)	intron (NM_001347586, intron 1 of 4)	2106.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-181257809-4	chr1	181257308	181258308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45830.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71179058-4	chr17	71178571	71179571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR1b|LTR|Gypsy	-4461.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	27.0	75.0	48.0	20.5	33.0	45.0
Merged-chr4-44300943-4	chr4	44300444	44301444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010790)	promoter-TSS (NM_010790)	27.0	NM_010790	17279.0	Mm.268668	NM_010790	ENSMUSG00000035683	Melk	AI327312|MPK38|mKIAA0175	maternal embryonic leucine zipper kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124730361-3	chr6	124729863	124730863	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077705, intron 3 of 15)	intron (NM_001077705, intron 3 of 15)	2791.0	NM_013545	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	2.5	33.5	19.5	2.5	24.5	17.5
Merged-chr3-40799964-4	chr3	40799450	40800450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173169)	promoter-TSS (NM_173169)	-1.0	NM_173169	20873.0	Mm.3794	NM_011495	ENSMUSG00000025758	Plk4	1700028H20|AI385771|Sak|Stk18	polo like kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120978682-7	chr10	120978184	120979184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081193, exon 1 of 13)	exon (NM_001081193, exon 1 of 13)	646.0	NM_001081193	380664.0	Mm.339371	NM_001081193	ENSMUSG00000048661	Lemd3	AI316861|Man1	LEM domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170868682-4	chr1	170868160	170869160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081304)	promoter-TSS (NM_001081304)	-889.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70074949-4	chr14	70074436	70075436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2509.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-14064849-4	chr13	14064326	14065326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_198122, exon 2 of 23)	5' UTR (NM_198122, exon 2 of 23)	1042.0	NM_198122	94246.0	Mm.439784	NM_194262	ENSMUSG00000039219	Arid4b	BCAA|BRCAA1|RBBP1L1|Rbp1l1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5843134-4	chr19	5842637	5843637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_003513, exon 1 of 1)	non-coding (NR_003513, exon 1 of 1)	2341.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-93093278-4	chr5	93092764	93093764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347377)	promoter-TSS (NM_001347377)	-152.0	NM_001009818	52398.0	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-77549449-4	chr8	77548970	77549970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081240)	promoter-TSS (NM_001081240)	73.0	NM_001081240	102182.0	Mm.197630	NM_178903	ENSMUSG00000037134	Prmt9	AI931714|Prmt10	protein arginine methyltransferase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-96542581-4	chr13	96542067	96543067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164222)	promoter-TSS (NM_001164222)	12.0	NM_012048	27015.0	Mm.89926	NM_012048	ENSMUSG00000021668	Polk	DINP|Dinb1	polymerase (DNA directed), kappa	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-88845716-4	chr18	88845226	88846226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48481.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-167337322-4	chr1	167336811	167337811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12680.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59544181-4	chr11	59543693	59544693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 2 of 9)	intron (NR_153314, intron 2 of 9)	1507.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-28011625-4	chr19	28011138	28012138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011265)	promoter-TSS (NM_011265)	-472.0	NM_001166414	19726.0	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-42264343-4	chr9	42263824	42264824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172769)	promoter-TSS (NM_172769)	-24.0	NM_172769	235293.0	Mm.32700	NM_172769	ENSMUSG00000032018	Sc5d	A830037K02|A830073K23Rik|Sc5dl	sterol-C5-desaturase	protein-coding	14.0	38.5	34.5	12.5	44.0	37.0
Merged-chr17-57347125-4	chr17	57346605	57347605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11581.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	10.5	13.0	16.0	10.5	13.0	16.0
Merged-chr14-30908140-4	chr14	30907646	30908646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008407)	TTS (NM_008407)	15441.0	NM_008407	16426.0	Mm.4517	NM_008407	ENSMUSG00000006522	Itih3	AW108094|ITI-HC3|Intin3|Itih-3	inter-alpha trypsin inhibitor, heavy chain 3	protein-coding	4.5	20.5	2.5	3.0	1.0	8.5
Merged-chr7-29211468-4	chr7	29210975	29211975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164658, intron 1 of 27)	intron (NM_001164658, intron 1 of 27)	2558.0	NM_001164658	320225.0	Mm.349382	NM_001039721	ENSMUSG00000049676	Catsperg1	A230107C01Rik|Catsperg	cation channel sperm associated auxiliary subunit gamma 1	protein-coding	9.5	32.0	32.0	29.0	51.5	40.0
Merged-chr13-74563981-4	chr13	74563475	74564475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70025.0	NM_146231	235956.0		NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50904688-2	chr9	50904188	50905188	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178710, intron 9 of 15)	Lx5|LINE|L1	47764.0	NM_001286553	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117991917-4	chr11	117991413	117992413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151726, intron 1 of 9)	intron (NR_151726, intron 1 of 9)	5056.0	NR_151726	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91844786-2	chr12	91844286	91845286	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039089, intron 1 of 20)	intron (NM_001039089, intron 1 of 20)	4371.0	NM_001039089	20338.0	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36133765-4	chr1	36133279	36134279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10534.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126494623-4	chr8	126494123	126495123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19558.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	1.5	2.5	2.5	2.0	21.5	6.5
Merged-chr3-136684726-3	chr3	136684231	136685231	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	14665.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139703058-2	chr5	139702558	139703558	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33275.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	6.0	8.5	7.0	7.0	22.5	13.5
Merged-chr8-46933861-4	chr8	46933359	46934359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53028.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-119313604-2	chr12	119313104	119314104	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75328.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51849022-4	chr13	51848536	51849536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011817)	TTS (NM_011817)	2361.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-64978935-4	chr11	64978422	64979422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023479)	promoter-TSS (NM_023479)	-113.0	NM_023479	68626.0	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	0.0	10.0	16.0	5.0	16.5	12.5
Merged-chr2-128429342-4	chr2	128428833	128429833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028589)	promoter-TSS (NR_028589)	18.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	49.0	192.0	141.5	53.5	160.5	106.5
Merged-chr6-124818073-4	chr6	124817588	124818588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001326594, intron 15 of 19)	intron (NM_001326594, intron 15 of 19)	-3792.0	NM_009415	21991.0	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|TIM|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-14867185-4	chr9	14866706	14867706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010287, intron 3 of 3)	intron (NM_010287, intron 3 of 3)	6996.0	NM_010287	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-108335428-4	chr13	108334953	108335953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178683, intron 2 of 10)	intron (NM_178683, intron 2 of 10)	19116.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	11.5	20.0	13.0	12.5	24.5	24.5
Merged-chr15-35155839-4	chr15	35155326	35156326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019635)	promoter-TSS (NM_019635)	-20.0	NM_019635	56274.0	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72419221-2	chr8	72418721	72419721	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122832, intron 1 of 15)	L2c|LINE|L2	2253.0	NM_001122832	13859.0	Mm.288894	NM_007944	ENSMUSG00000006276	Eps15l1	9830147J04Rik|AI593686|Eps15-rs|Eps15R	epidermal growth factor receptor pathway substrate 15-like 1	protein-coding	2.0	7.5	10.5	16.0	4.0	7.5
Merged-chr6-126996556-4	chr6	126996050	126997050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18992.0	NM_010204	14177.0	Mm.3403	NM_010204	ENSMUSG00000000183	Fgf6	Fgf-6|HSTF-2	fibroblast growth factor 6	protein-coding	2.0	13.5	0.0	0.0	12.0	2.5
Merged-chr11-117826448-2	chr11	117825948	117826948	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009387)	promoter-TSS (NM_009387)	-434.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181520407-4	chr2	181519908	181520908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016775)	promoter-TSS (NM_016775)	-77.0	NM_016775	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	64.0	152.0	103.0	30.0	102.0	69.5
Merged-chr12-87267334-2	chr12	87266834	87267834	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146036, intron 1 of 8)	intron (NM_146036, intron 1 of 8)	606.0	NM_146036	217737.0	Mm.22626	NM_146036	ENSMUSG00000021037	Ahsa1	BC023857|p38	AHA1, activator of heat shock protein ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180726923-4	chr2	180726444	180727444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183161, intron 1 of 12)	intron (NM_183161, intron 1 of 12)	1605.0	NM_183161	228993.0	Mm.87189	NM_183161	ENSMUSG00000023393	Slc17a9	1700019H03Rik|BC019537|Vnut	solute carrier family 17, member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121376616-4	chr10	121376115	121377115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 4 of 13)	intron (NM_029364, intron 4 of 13)	11525.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	4.0	42.0	9.0	4.0	34.5	18.5
Merged-chr5-130256978-4	chr5	130256493	130257493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001015876)	promoter-TSS (NM_001015876)	-44.0	NR_153350	100929.0	Mm.271296	NM_178897	ENSMUSG00000056310	Tyw1	AW125391|Rsafd1	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41074035-4	chr13	41073528	41074528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145802, intron 1 of 11)	intron (NM_001145802, intron 1 of 11)	-3563.0	NM_008547	17152.0	Mm.8149	NM_008547	ENSMUSG00000021363	Mak	A930010O05Rik	male germ cell-associated kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118814154-4	chr2	118813651	118814651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026412, exon 1 of 9)	exon (NM_026412, exon 1 of 9)	148.0	NM_026412	51944.0	Mm.252695	NM_026412	ENSMUSG00000027331	Knstrn	1700025D04Rik|C15orf23|D2Ertd750e|SKAP|Traf4af1	kinetochore-localized astrin/SPAG5 binding	protein-coding	17.0	6.5	17.0	1.0	8.5	21.5
Merged-chr18-75007593-1	chr18	75007093	75008093	+	1000.0	f1_balb.idr	intron (NM_001358306, intron 1 of 2)	intron (NM_001358306, intron 1 of 2)	1754.0	NM_001001181	407819.0	Mm.29866	NM_001001181	ENSMUSG00000036299	BC031181	-	cDNA sequence BC031181	protein-coding	3.5	7.0	0.5	5.5	2.5	2.0
Merged-chr2-160152329-4	chr2	160151809	160152809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	135656.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-90463665-4	chr6	90463172	90464172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355668, intron 1 of 2)	CpG	1096.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100431307-4	chr7	100430770	100431770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 22 of 32)	intron (NM_001017985, intron 22 of 32)	-41721.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	32.0	94.0	60.0	38.0	55.5	42.5
Merged-chr11-68431430-2	chr11	68430930	68431930	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177320)	promoter-TSS (NM_177320)	-695.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16401130-6	chr7	16400635	16401635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198631)	promoter-TSS (NM_198631)	-61.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-68258550-2	chr15	68258050	68259050	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152182, intron 1 of 13)	CpG	306.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55399169-2	chr12	55398669	55399669	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011968, intron 1 of 6)	CpG	344.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55886114-4	chr14	55885620	55886620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027143, intron 2 of 7)	intron (NM_027143, intron 2 of 7)	1178.0	NR_138134	219094.0	Mm.37592	NM_027143	ENSMUSG00000047153	Khnyn	6330555F21|9130227C08Rik|AI605259|Kiaa0323|mKIAA0323	KH and NYN domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180302910-4	chr1	180302398	180303398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27578.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-72813103-2	chr11	72812603	72813603	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045536, intron 1 of 54)	intron (NM_001045536, intron 1 of 54)	16877.0	NM_001045536	195018.0	Mm.272030	NM_001045536	ENSMUSG00000055670	Zzef1	8430405D05Rik|BC051585|C130099L13Rik|C85424|NSPA|mKIAA0399	zinc finger, ZZ-type with EF hand domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155236930-1	chr2	155236430	155237430	+	1000.0	f1_c57bl6.idr	exon (NM_001291108, exon 1 of 4)	exon (NM_001291108, exon 1 of 4)	322.0	NM_001291108	67068.0	Mm.23693	NM_025947	ENSMUSG00000047459	Dynlrb1	2010012N15Rik|2010320M17Rik|9430076K19Rik|AV124457|DNLC2A|Dncl2a|km23-1	dynein light chain roadblock-type 1	protein-coding	91.5	156.5	163.5	153.0	445.5	237.0
Merged-chr5-100585238-4	chr5	100584747	100585747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G|LTR|ERVL-MaLR	-13042.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94525284-2	chr16	94524784	94525784	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 1 of 7)	B3A|SINE|B2	1345.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56325848-4	chr17	56325320	56326320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357909)	promoter-TSS (NM_001357909)	-230.0	NM_172132	193796.0	Mm.45047	NM_172132	ENSMUSG00000024201	Kdm4b	4732474L06Rik|Jmjd2b	lysine (K)-specific demethylase 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-55129515-4	chr3	55129025	55130025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001144987, intron 8 of 8)	MER73|LTR|ERVL	-7814.0	NM_001290138	320604.0	Mm.213909	NM_177203	ENSMUSG00000048655	Ccdc169	A730037C10Rik	coiled-coil domain containing 169	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32250453-4	chr4	32249947	32250947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-166988.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39443320-4	chr10	39442838	39443838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	MLT1B|LTR|ERVL-MaLR	73539.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-129948609-4	chr3	129948117	129949117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025779, intron 1 of 7)	intron (NM_025779, intron 1 of 7)	21589.0	NM_025779	66815.0	Mm.31056	NM_025779	ENSMUSG00000027994	Mcub	9030408N13Rik|Ccdc109b	mitochondrial calcium uniporter dominant negative beta subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119102445-4	chr9	119101965	119102965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177117)	promoter-TSS (NM_177117)	-13.0	NM_177117	320256.0	Mm.110648	NM_177117	ENSMUSG00000038060	Dlec1	D630005C06Rik	deleted in lung and esophageal cancer 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42753395-4	chr19	42752921	42753921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029011)	promoter-TSS (NM_029011)	-646.0	NM_029011	74580.0	Mm.329858	NM_029011	ENSMUSG00000060224	Pyroxd2	3830409H07Rik|4833409A17Rik	pyridine nucleotide-disulphide oxidoreductase domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142533178-4	chr7	142532761	142533761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011288, intron 1 of 4)	CpG	144.0	NM_011288	19935.0	Mm.12144	NM_011288	ENSMUSG00000037772	Mrpl23	L23mrp|Rpl23|Rpl23l	mitochondrial ribosomal protein L23	protein-coding	37.0	55.0	51.0	17.0	50.5	38.5
Merged-chr6-91473591-4	chr6	91473099	91474099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133928)	promoter-TSS (NM_133928)	-152.0	NM_028766	74122.0	Mm.38801	NM_028766	ENSMUSG00000030095	Tmem43	1200015A22Rik|LUMA	transmembrane protein 43	protein-coding	40.5	112.5	59.0	44.0	135.5	76.5
Merged-chr10-7681107-4	chr10	7680622	7681622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033219)	promoter-TSS (NR_033219)	13.0	NM_001358649	18537.0	Mm.258431	NM_008786	ENSMUSG00000019795	Pcmt1	C79501|PIMT	protein-L-isoaspartate (D-aspartate) O-methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-70797965-4	chr6	70797457	70798457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5782.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108760744-4	chr12	108760238	108761238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32573.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	4.5	5.5	1.0	4.5	5.5	1.0
Merged-chr2-102877695-4	chr2	102877189	102878189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	23976.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	12.5	20.5	9.0	12.5	29.5	4.5
Merged-chr19-9953005-4	chr19	9952501	9953501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27599.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	93.0	180.0	168.0	102.0	212.5	186.0
Merged-chr6-30616838-4	chr6	30616352	30617352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144537, intron 4 of 11)	intron (NM_144537, intron 4 of 11)	5842.0	NM_144537	74649.0	Mm.159276	NM_144537	ENSMUSG00000029788	Cpa5	4930430M09Rik	carboxypeptidase A5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34066819-4	chr11	34066316	34067316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 3 of 20)	ORR1F|LTR|ERVL-MaLR	19888.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120582770-4	chr9	120582284	120583284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5453.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124612019-2	chr2	124611519	124612519	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	1723.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61469046-4	chr11	61468539	61469539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15047.0	NM_001291024	22671.0	Mm.89201	NM_009548	ENSMUSG00000010086	Rnf112	ZNF179|Zfp179|bfp|neurolastin	ring finger protein 112	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148041593-2	chr4	148041093	148042093	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001161798, exon 2 of 12)	exon (NM_001161798, exon 2 of 12)	404.0	NM_001161798	17769.0	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	methylenetetrahydrofolate reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79153133-4	chr3	79152654	79153654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7279.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	15.5	55.5	42.0	10.5	29.5	18.0
Merged-chr5-31095515-4	chr5	31095007	31096007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347323, intron 1 of 8)	CpG	-1980.0	NM_011773	22784.0	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	0.0	20.5	10.0	5.5	4.5	4.5
Merged-chr10-7847270-4	chr10	7846764	7847764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172785, intron 2 of 5)	intron (NM_172785, intron 2 of 5)	10883.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	4.0	32.5	10.0	19.5	11.0	20.5
Merged-chr4-45520601-4	chr4	45520103	45521103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	10225.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	21.5	15.5	14.0	10.5	16.0	6.5
Merged-chr1-191334672-4	chr1	191334164	191335164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025864, intron 2 of 7)	MTEa|LTR|ERVL-MaLR	8699.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	11.0	51.0	21.5	20.0	25.0	23.5
Merged-chr5-30960330-4	chr5	30959841	30960841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016703)	promoter-TSS (NM_016703)	-14.0	NM_016703	50907.0	Mm.272414	NM_016703	ENSMUSG00000045302	Preb	C85705	prolactin regulatory element binding	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36936044-4	chr16	36935518	36936518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008225, intron 1 of 13)	intron (NM_008225, intron 1 of 13)	1035.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119918567-2	chr11	119918067	119919067	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085498, intron 7 of 7)	intron (NM_001085498, intron 7 of 7)	4757.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29238261-4	chr7	29237777	29238777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110201)	promoter-TSS (NM_001110201)	-46.0	NM_001110201	77254.0	Mm.36699	NM_029887	ENSMUSG00000030588	Yif1b	9430029K10Rik|Yip1b	Yip1 interacting factor homolog B (S. cerevisiae)	protein-coding	48.5	51.0	50.0	18.5	45.5	24.0
Merged-chr6-125352094-4	chr6	125351595	125352595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011609, intron 1 of 9)	intron (NM_011609, intron 1 of 9)	2372.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	70.5	78.0	75.0	20.0	82.5	31.5
Merged-chr6-127240297-4	chr6	127239782	127240782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67685.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73539872-2	chr7	73539372	73540372	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_037569)	TTS (NR_037569)	1874.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-110217863-4	chr8	110217349	110218349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146215)	promoter-TSS (NM_146215)	-111.0	NM_146215	234728.0	Mm.275341	NM_146215	ENSMUSG00000046441	Cmtr2	AU022703|C730036L12Rik|Ftsjd1|MTr2	cap methyltransferase 2	protein-coding	0.0	16.5	6.0	5.5	4.5	4.0
Merged-chr14-56886450-4	chr14	56885962	56886962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029498)	promoter-TSS (NM_029498)	-141.0	NM_177627	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71630060-4	chr8	71629559	71630559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_106035)	TTS (NR_106035)	1047.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	147.5	260.5	216.5	154.0	306.5	196.0
Merged-chr1-34849861-8	chr1	34849392	34850392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175421)	promoter-TSS (NM_175421)	-67.0	NM_145516	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107087575-4	chr3	107087069	107088069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-13998.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73533661-4	chr7	73533189	73534189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	8057.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8667978-4	chr3	8667455	8668455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010423)	promoter-TSS (NM_010423)	-917.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-82753193-4	chr6	82752641	82753641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 2 of 17)	intron (NM_013820, intron 2 of 17)	21313.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	57.0	84.5	47.5	42.0	84.5	32.0
Merged-chr5-25705796-4	chr5	25705283	25706283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020570)	promoter-TSS (NM_020570)	14.0	NM_020570	57434.0	Mm.143767	NM_020570	ENSMUSG00000028933	Xrcc2	4921524O04Rik|8030409M04Rik|RAD51|RecA	X-ray repair complementing defective repair in Chinese hamster cells 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110994867-4	chr9	110994379	110995379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152179, intron 2 of 6)	RMER17C2|LTR|ERVK	-5166.0	NM_153100	235636.0	Mm.441138	NM_153100	ENSMUSG00000066319	Rtp3	Tmem7	receptor transporter protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5715234-2	chr2	5714734	5715734	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177343)	promoter-TSS (NM_177343)	-472.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25484252-4	chr14	25483748	25484748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	25063.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5764412-3	chr18	5763912	5764912	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360982, intron 5 of 7)	intron (NM_001360982, intron 5 of 7)	171765.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	49.5	84.5	75.5	24.0	67.5	60.0
Merged-chr7-100855994-4	chr7	100855498	100856498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177073, intron 1 of 10)	intron (NM_177073, intron 1 of 10)	7415.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36914689-4	chr1	36914173	36915173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 1 of 40)	intron (NM_018872, intron 1 of 40)	24854.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117338839-4	chr8	117338319	117339319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-10351.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30421322-1	chr7	30420822	30421822	+	1000.0	f0_c57.idr	promoter-TSS (NM_001360906)	promoter-TSS (NM_001360906)	-409.0	NM_001360906	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	176.5	600.5	391.0	223.0	484.0	355.5
Merged-chr14-20695713-2	chr14	20695209	20696209	+	1000.0	f0_balb.idr|f0_c57.idr	TTS (NM_001168273)	TTS (NM_001168273)	741.0	NM_028428	73068.0	Mm.277552	NM_028428	ENSMUSG00000039357	Fut11	3110009G03Rik|AI317183	fucosyltransferase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49971467-4	chr16	49970957	49971957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9003.0	NR_045001	628951.0	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-40937319-4	chr14	40936813	40937813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	10896.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-107359579-4	chr5	107359081	107360081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_054054, exon 12 of 19)	exon (NM_054054, exon 12 of 19)	28387.0	NM_054054	114642.0	Mm.182836	NM_054054	ENSMUSG00000029279	Brdt	7420412D09Rik|Brd6|Fsrg3	bromodomain, testis-specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-42984150-3	chr15	42983750	42984750	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	186568.0	NM_001357957	239405.0	Mm.193274	NM_172815	ENSMUSG00000051920	Rspo2	2610028F08Rik|AA673245|D430027K22|ftls	R-spondin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-51982423-4	chr2	51981925	51982925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9217.0	NM_001141948	64685.0	Mm.7491	NM_019401	ENSMUSG00000026946	Nmi	-	N-myc (and STAT) interactor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-92459754-4	chr2	92459258	92460258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_211358)	promoter-TSS (NM_211358)	36.0	NM_211358	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21168438-4	chr9	21167936	21168936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183408, intron 1 of 14)	intron (NM_183408, intron 1 of 14)	2722.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40513835-4	chr19	40513343	40514343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009166)	promoter-TSS (NM_009166)	-31.0	NM_009166	20411.0	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	12.5	3.5	3.0	2.0	3.5	4.0
Merged-chr4-94556788-4	chr4	94556299	94557299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026368)	promoter-TSS (NM_026368)	-3.0	NM_026368	67770.0	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	25.0	84.5	71.5	13.0	124.5	72.5
Merged-chr10-85386728-3	chr10	85386209	85387209	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028709)	promoter-TSS (NM_028709)	-105.0	NM_028709	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	45.0	45.0	41.5	6.5	11.5	4.5
Merged-chr2-84638653-4	chr2	84638155	84639155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007615, intron 1 of 19)	intron (NM_007615, intron 1 of 19)	10825.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	17.0	10.5	2.0	10.5	24.5	13.0
Merged-chr13-28824180-3	chr13	28823691	28824691	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045054, intron 2 of 7)	intron (NR_045054, intron 2 of 7)	61231.0	NR_045054	72518.0	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79704414-4	chr10	79703939	79704939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009768)	promoter-TSS (NM_009768)	81.0	NM_009768	12215.0	Mm.726	NM_009768	ENSMUSG00000023175	Bsg	AI115436|AI325119|CD147|EMMPRIN|HT-7	basigin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28386652-4	chr7	28386155	28387155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026042, exon 4 of 4)	3' UTR (NM_026042, exon 4 of 4)	6035.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32455158-5	chr11	32454703	32455703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361561)	promoter-TSS (NM_001361561)	-167.0	NM_001361561	327900.0	Mm.260956	NM_173784	ENSMUSG00000044949	Ubtd2	4930571L24|9630054F20Rik|AI645720	ubiquitin domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120154652-4	chr2	120154139	120155139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133838)	promoter-TSS (NM_133838)	-64.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	123.0	242.5	181.5	130.5	329.0	272.5
Merged-chr18-34624574-3	chr18	34624052	34625052	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166406)	promoter-TSS (NM_001166406)	-72.0	NM_001166407	19348.0	Mm.258846	NM_009004	ENSMUSG00000003779	Kif20a	AA415432|Rab6kifl	kinesin family member 20A	protein-coding	9.0	47.5	34.0	27.0	52.5	40.5
Merged-chr8-25018485-2	chr8	25017985	25018985	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027194, intron 2 of 3)	intron (NM_027194, intron 2 of 3)	1274.0	NM_027194	69742.0	Mm.28626	NM_027194	ENSMUSG00000031556	Tm2d2	2410018G23Rik|Blp1	TM2 domain containing 2	protein-coding	2.0	19.0	9.0	2.5	20.5	13.0
Merged-chr12-32378962-4	chr12	32378535	32379535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001162903, exon 1 of 1)	exon (NM_001162903, exon 1 of 1)	246.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53236750-2	chr4	53236250	53237250	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME4b|LINE|L1	-9446.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88138292-4	chr8	88137791	88138791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106039)	promoter-TSS (NR_106039)	85.0	NR_106039	102465649.0		NR_106039	ENSMUSG00000099080	Mir7071	Gm27623|mmu-mir-7071	microRNA 7071	ncRNA	115.5	175.5	153.5	109.5	132.0	117.5
Merged-chr10-108196655-2	chr10	108196155	108197155	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027892, intron 1 of 25)	B3|SINE|B2	34255.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-42472237-4	chr9	42471759	42472759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173038)	promoter-TSS (NM_173038)	-1.0	NM_173038	272589.0	Mm.34483	NM_173038	ENSMUSG00000037287	Tbcel	D330014K23|E130107N23Rik|Lrrc35	tubulin folding cofactor E-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105345237-4	chr8	105344734	105345734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	2736.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61087859-2	chr18	61087359	61088359	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17713.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8509875-4	chr12	8509376	8510376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9867.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	80.0	151.5	95.0	25.0	91.0	36.0
Merged-chr6-21949541-4	chr6	21949040	21950040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023626)	promoter-TSS (NM_023626)	-31.0	NM_001311061	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86064327-4	chr1	86063841	86064841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027357)	promoter-TSS (NM_027357)	-278.0	NM_027357	70247.0	Mm.280013	NM_027357	ENSMUSG00000026229	Psmd1	2410026J11Rik|P112|S1	proteasome (prosome, macropain) 26S subunit, non-ATPase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57811923-2	chr6	57811423	57812423	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 1 of 4)	intron (NM_146168, intron 1 of 4)	13202.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31376937-2	chr14	31376437	31377437	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 6 of 7)	intron (NM_001347585, intron 6 of 7)	40299.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-97772317-4	chr4	97771805	97772805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	CpG	-5321.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7571370-4	chr9	7570877	7571877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310717)	promoter-TSS (NM_001310717)	-19.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17637788-2	chr6	17637288	17638288	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007604, intron 1 of 9)	intron (NM_007604, intron 1 of 9)	778.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	44.0	155.5	118.0	43.5	140.0	107.5
Merged-chr12-111170246-2	chr12	111169746	111170746	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286122, intron 1 of 9)	intron (NM_001286122, intron 1 of 9)	3876.0	NM_011632	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-59120684-4	chr3	59120184	59121184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287119, intron 1 of 2)	MER20|DNA|hAT-Charlie	10078.0	NM_001287124	140795.0	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	2.0	15.5	11.0	7.5	10.5	12.5
Merged-chr8-69008052-4	chr8	69007551	69008551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80685.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	71.0	210.5	131.5	68.5	103.0	122.0
Merged-chr2-79060528-4	chr2	79060022	79061022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	190844.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116720820-4	chr4	116720338	116721338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146151)	promoter-TSS (NM_146151)	-117.0	NM_146151	230661.0	Mm.482431	NM_146151	ENSMUSG00000033985	Tesk2	-	testis-specific kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40093693-4	chr10	40093202	40094202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	48552.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95151283-4	chr10	95150777	95151777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-5452.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80151775-4	chr18	80151220	80152220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175028)	promoter-TSS (NM_175028)	-238.0	NM_175028	240442.0	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153489354-4	chr1	153488886	153489886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1726.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-10555376-4	chr10	10554880	10555880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026405, intron 1 of 2)	intron (NM_026405, intron 1 of 2)	2827.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	19.0	32.5	44.0	19.0	32.5	41.5
Merged-chr2-131254159-4	chr2	131253663	131254663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7845.0	NM_001355681	74450.0	Mm.101264	NM_153501	ENSMUSG00000037514	Pank2	4933409I19Rik|AI642621	pantothenate kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64229163-4	chr5	64228656	64229656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	MLT1F2|LTR|ERVL-MaLR	-1201.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59263181-4	chr10	59262685	59263685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41263.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-5805604-4	chr10	5805135	5806135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025995)	promoter-TSS (NM_025995)	-170.0	NM_025995	67141.0	Mm.197520	NM_025995	ENSMUSG00000019773	Fbxo5	2510044I10Rik|C85305|Emi1|Fbxo31	F-box protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148732468-4	chr2	148731988	148732988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019632)	promoter-TSS (NM_019632)	-68.0	NM_019632	17957.0	Mm.274308	NM_019632	ENSMUSG00000027438	Napb	Brp14|E161|I47|SNARE|b-SNAP	N-ethylmaleimide sensitive fusion protein attachment protein beta	protein-coding	0.0	7.0	3.5	1.0	2.5	8.0
Merged-chr2-25224839-4	chr2	25224335	25225335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146116)	promoter-TSS (NM_146116)	-133.0	NM_146116	227613.0	Mm.227260	NM_146116	ENSMUSG00000036752	Tubb4b	4930542G03Rik|Tubb2c|Tubb2c1	tubulin, beta 4B class IVB	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-93994734-2	chr11	93994234	93995234	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1357.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	26.0	112.5	67.0	37.5	85.5	55.5
Merged-chr12-35799448-4	chr12	35798963	35799963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104345.0	NR_045050	71581.0	Mm.100110	NR_045050	ENSMUSG00000113985	9130015A21Rik	100043575|Gm4527	RIKEN cDNA 9130015A21 gene	ncRNA	0.0	0.0	0.5	0.0	0.0	3.5
Merged-chr10-29361367-4	chr10	29360863	29361863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110198, intron 1 of 3)	(A)n|Simple_repeat|Simple_repeat	1079.0	NM_026518	68031.0	Mm.28930	NM_026518	ENSMUSG00000038876	Rnf146	2610509H23Rik|Iduna	ring finger protein 146	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-140610330-4	chr6	140609834	140610834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-12329.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-81591332-2	chr18	81590832	81591832	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	400748.0	NR_039589	100628596.0		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82915601-2	chr18	82915101	82916101	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177464, intron 1 of 5)	intron (NM_001177464, intron 1 of 5)	969.0	NM_001177464	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19915489-4	chr10	19914996	19915996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7822.0	NM_001161825	18634.0	Mm.338363	NM_008822	ENSMUSG00000020003	Pex7	MmPEX7	peroxisomal biogenesis factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3409234-4	chr11	3408733	3409733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010718)	promoter-TSS (NM_010718)	5.0	NM_010718	16886.0	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5613804-4	chr2	5613292	5614292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	62254.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75572314-2	chr11	75571814	75572814	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 13 of 13)	intron (NM_001199284, intron 13 of 13)	-15765.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	15.5	51.5	26.5	23.0	18.0	25.0
Merged-chr9-108263914-4	chr9	108263427	108264427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276481)	promoter-TSS (NM_001276481)	31.0	NM_001276486	13138.0	Mm.7524	NM_010017	ENSMUSG00000039952	Dag1	D9Wsu13e|DG|Dp427|Dp71	dystroglycan 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29875009-4	chr11	29874528	29875528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 7 of 41)	RMER16_Mm|LTR|ERVK	-49360.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	0.0	0.0	1.0	0.0	3.0	5.0
Merged-chr3-96696400-4	chr3	96695916	96696916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146135)	promoter-TSS (NM_146135)	41.0	NM_146135	229615.0	Mm.1635	NM_018812	ENSMUSG00000028101	Pias3	Pias3l	protein inhibitor of activated STAT 3	protein-coding	1.5	8.5	13.0	4.0	3.0	6.5
Merged-chr4-155249996-4	chr4	155249491	155250491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190445)	promoter-TSS (NM_001190445)	25.0	NR_033802	67513.0	Mm.10374	NM_001190445	ENSMUSG00000073684	Faap20	2610002J02Rik	Fanconi anemia core complex associated protein 20	protein-coding	20.5	59.0	44.0	14.0	23.0	44.0
Merged-chr2-102967631-4	chr2	102967124	102968124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65959.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	16.5	23.0	20.0	18.5	23.5	20.5
Merged-chr6-136497985-4	chr6	136497502	136498502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20849.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	23.0	54.5	44.5	21.5	57.5	29.5
Merged-chr12-38779512-4	chr12	38779001	38780001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007960)	promoter-TSS (NM_007960)	-581.0	NM_001347379	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	49.5	71.5	72.5	41.5	102.5	103.5
Merged-chr18-38930588-4	chr18	38930086	38931086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033789, intron 3 of 4)	intron (NM_001033789, intron 3 of 4)	-11887.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	6.0	7.5	2.0	7.0	8.0	0.5
Merged-chr17-80728201-4	chr17	80727704	80728704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290345)	promoter-TSS (NM_001290345)	-179.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-102693505-4	chr13	102692995	102693995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008533)	promoter-TSS (NM_008533)	-52.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	57.0	168.5	118.0	57.0	175.0	119.0
Merged-chr11-3196499-7	chr11	3195939	3196939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2976.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24499673-2	chr13	24499173	24500173	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-82516.0	NM_001286100	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35777229-4	chr17	35776677	35777677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045459, exon 2 of 3)	non-coding (NR_045459, exon 2 of 3)	4727.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	14.0	46.0	31.0	11.0	18.5	7.0
Merged-chr18-34779453-4	chr18	34778964	34779964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081256, intron 1 of 23)	intron (NM_001081256, intron 1 of 23)	2456.0	NM_001081256	277250.0	Mm.277906	NM_029518	ENSMUSG00000038773	Kdm3b	5830462I21Rik|JHDM2B|Jmjd1b|mKIAA1082	KDM3B lysine (K)-specific demethylase 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29264119-4	chr17	29263597	29264597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026845)	promoter-TSS (NM_026845)	-126.0	NM_026845	68816.0	Mm.328928	NM_026845	ENSMUSG00000024007	Ppil1	1110060O10Rik|AI327391|Cypl1	peptidylprolyl isomerase (cyclophilin)-like 1	protein-coding	44.0	156.0	130.5	27.0	103.5	101.0
Merged-chr5-136458680-4	chr5	136458173	136459173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291238, intron 2 of 22)	intron (NM_001291238, intron 2 of 22)	-82870.0	NR_030500	723975.0		NR_030500	ENSMUSG00000106479	Mir721	Mirn721|miRY|mir-721|mmu-mir-721	microRNA 721	ncRNA	21.0	4.0	12.5	11.5	4.0	14.5
Merged-chr9-124424174-4	chr9	124423684	124424684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027950, exon 2 of 2)	non-coding (NR_027950, exon 2 of 2)	397.0	NR_015516	75135.0	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112786387-4	chr13	112785891	112786891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-14386.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39137610-4	chr18	39137104	39138104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 10 of 21)	intron (NM_001361073, intron 10 of 21)	144459.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87620385-4	chr1	87619896	87620896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010566)	promoter-TSS (NM_010566)	84.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3644799-2	chr8	3644299	3645299	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011503)	TTS (NM_011503)	-10971.0	NM_001204959	57264.0	Mm.1181	NM_022984	ENSMUSG00000012705	Retn	ADSF|Fizz3|Rstn|Xcp4	resistin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6179927-4	chr2	6179418	6180418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-13333.0	NR_040333	320132.0	Mm.445891	NR_040333	ENSMUSG00000087125	A230108P19Rik	-	RIKEN cDNA A230108P19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118567388-4	chr2	118566870	118567870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17684.0	NM_138313	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	5.0	50.5	32.0	12.5	6.0	23.0
Merged-chr9-67838935-3	chr9	67838432	67839432	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-1464.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	0.0	0.0	3.0	1.5	0.0	0.0
Merged-chr6-135168182-4	chr6	135167683	135168683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013546)	promoter-TSS (NM_013546)	32.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	53.5	150.5	159.5	101.0	145.5	137.5
Merged-chr4-130911741-2	chr4	130911241	130912241	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1593.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134883414-2	chr4	134882914	134883914	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011270, intron 3 of 9)	L2|LINE|L2	18878.0	NM_011270	19746.0	Mm.195461	NM_011270	ENSMUSG00000028825	Rhd	Rh|Rhced|Rhl1	Rh blood group, D antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-30602476-4	chr3	30601979	30602979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_030557, exon 1 of 8)	5' UTR (NM_030557, exon 1 of 8)	392.0	NM_001289622	80732.0	Mm.200378	NM_030557	ENSMUSG00000037730	Mynn	2810011C24Rik|AA415053|AI661031|AW049392|Mynr|SBBIZ1	myoneurin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-66553874-2	chr12	66553374	66554374	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001193266, intron 9 of 16)	intron (NM_001193266, intron 9 of 16)	-269473.0	NM_001162933	238217.0	Mm.188575	NM_001162933	ENSMUSG00000060499	Rpl10l	EG238217	ribosomal protein L10-like	protein-coding	3.5	0.0	0.0	0.0	0.0	2.0
Merged-chr14-30875691-2	chr14	30875191	30876191	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028839, exon 8 of 8)	3' UTR (NM_028839, exon 8 of 8)	-3566.0	NM_181390	66175.0	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3801828-2	chr4	3801345	3802345	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	33810.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	5.5	0.0	1.5	6.0	3.0	0.5
Merged-chr14-55761852-2	chr14	55761352	55762352	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020490, intron 1 of 1)	intron (NM_020490, intron 1 of 1)	424.0	NM_020490	57260.0	Mm.159670	NM_020490	ENSMUSG00000040432	Ltb4r2	5830462O07Rik|BLT2|LTB4-R 2|LTB4-R-2|LTB4-R2	leukotriene B4 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34878804-4	chr8	34878285	34879285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 5 of 26)	intron (NM_175091, intron 5 of 26)	71175.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	13.5	14.0	12.5	27.5	38.5	34.5
Merged-chr12-13269236-5	chr12	13268747	13269747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027706, exon 1 of 52)	exon (NM_027706, exon 1 of 52)	120.0	NM_027706	71169.0	Mm.177520	NM_027706	ENSMUSG00000020576	Nbas	4933425L03Rik|Nag	neuroblastoma amplified sequence	protein-coding	32.0	121.0	110.5	57.5	41.5	32.5
Merged-chr11-53428818-2	chr11	53428318	53429318	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001326614, exon 3 of 3)	3' UTR (NM_001326614, exon 3 of 3)	2013.0	NM_025352	22272.0	Mm.251621	NM_025352	ENSMUSG00000044894	Uqcrq	1100001F06Rik|1500040F11Rik|5830407L17Rik|9.5kDa|AA959903|QP-C|Qpc|Uqcrb|c1502	ubiquinol-cytochrome c reductase, complex III subunit VII	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121452490-4	chr5	121451983	121452983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026129)	promoter-TSS (NM_026129)	-9.0	NM_026129	67397.0	Mm.154570	NM_026129	ENSMUSG00000029616	Erp29	1200015M03Rik|2810446M09Rik|AW209030|Erp28|Erp31|PDI-Db	endoplasmic reticulum protein 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30599622-4	chr16	30599067	30600067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177632)	promoter-TSS (NM_177632)	-156.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92499666-4	chr5	92499164	92500164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	5993.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	4.5	31.0	23.5	5.5	38.5	26.5
Merged-chr4-132463975-4	chr4	132463478	132464478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026039)	promoter-TSS (NM_026039)	-57.0	NM_026039	67219.0	Mm.45929	NM_026039	ENSMUSG00000066042	Med18	2810046C01Rik	mediator complex subunit 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42031252-4	chr10	42030736	42031736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12854.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45338381-2	chr7	45337881	45338881	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029741)	TTS (NM_029741)	3112.0	NM_010473	15464.0	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4001334-2	chr19	4000834	4001834	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025529, intron 2 of 3)	intron (NM_025529, intron 2 of 3)	754.0	NM_025529	66387.0	Mm.259222	NM_025529	ENSMUSG00000110949	Nudt8	2310039H17Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180300469-4	chr1	180299980	180300980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-29996.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24601131-4	chr7	24600644	24601644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023154, intron 4 of 7)	intron (NM_023154, intron 4 of 7)	-10184.0	NM_001102613	232970.0	Mm.333663	NM_001102613	ENSMUSG00000074277	Phldb3	EG232970|Gm10102	pleckstrin homology like domain, family B, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-86888750-4	chr8	86888241	86889241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3483.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	35.5	74.5	49.0	40.5	68.0	55.0
Merged-chr6-125367886-4	chr6	125367393	125368393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198604, intron 14 of 16)	intron (NM_198604, intron 14 of 16)	12611.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	15.5	29.0	10.5	12.5	33.0	18.5
Merged-chr9-99378208-4	chr9	99377724	99378724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB3_1-LTR_MM|LTR|ERVK	-19694.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85750423-3	chr1	85749909	85750909	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1539.0	NR_106172	102466882.0		NR_106172	ENSMUSG00000098634	Mir8096	Gm27479|mmu-mir-8096	microRNA 8096	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-31127085-4	chr7	31126545	31127545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011322)	promoter-TSS (NM_011322)	-22.0	NM_011322	20266.0	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	8.5	25.0	24.0	8.5	22.0	24.0
Merged-chr9-59749086-4	chr9	59748582	59749582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172069, intron 1 of 2)	intron (NM_001172069, intron 1 of 2)	1567.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-45826973-4	chr1	45826495	45827495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31829.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78175987-4	chr9	78175498	78176498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040401)	promoter-TSS (NR_040401)	84.0	NR_040401	320295.0	Mm.131285	NR_040401	ENSMUSG00000097574	C920006O11Rik	-	RIKEN cDNA C920006O11 gene	ncRNA	158.5	362.5	324.5	153.5	393.5	350.0
Merged-chr18-65934993-4	chr18	65934504	65935504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013833, exon 3 of 3)	exon (NM_013833, exon 3 of 3)	4085.0	NM_013833	19434.0	Mm.431047	NM_013833	ENSMUSG00000024518	Rax	7530406A22Rik|E130303K03Rik|Rx|ey-1|ey1	retina and anterior neural fold homeobox	protein-coding	0.0	0.0	1.0	2.5	0.0	0.0
Merged-chr4-139380560-4	chr4	139380082	139381082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160319)	promoter-TSS (NM_001160319)	-77.0	NM_001160319	69116.0	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	23.0	27.5	62.0	13.5	81.5	59.5
Merged-chr2-118745237-2	chr2	118744737	118745737	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301269)	promoter-TSS (NM_001301269)	-521.0	NM_001301269	100043272.0	Mm.398072	NM_001301269	ENSMUSG00000074918	Inafm2	5430417L22Rik	InaF motif containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69016004-4	chr11	69015518	69016518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001013256, exon 1 of 23)	5' UTR (NM_001013256, exon 1 of 23)	107.0	NM_001013256	68964.0	Mm.285785	NM_001013256	ENSMUSG00000020898	Ctc1	1500010J02Rik|AAF-132|AAF132	CTS telomere maintenance complex component 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77754703-6	chr9	77754243	77755243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151778, exon 1 of 17)	non-coding (NR_151778, exon 1 of 17)	208.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	0.0	0.5	0.0	0.0	1.0	0.0
Merged-chr10-128779675-4	chr10	128779175	128780175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11235.0	NM_001164197	58223.0	Mm.131266	NM_021412	ENSMUSG00000025355	Mmp19	-	matrix metallopeptidase 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86897380-4	chr12	86896892	86897892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12578.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-19537544-4	chr4	19537061	19538061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027769, intron 7 of 15)	intron (NM_027769, intron 7 of 15)	32547.0	NM_027769	70568.0	Mm.38390	NM_027769	ENSMUSG00000028228	Cpne3	5430428M23Rik|5730450C07Rik|C85108|CPN3	copine III	protein-coding	1.0	19.5	14.0	7.5	8.5	7.0
Merged-chr5-139017912-4	chr5	139017405	139018405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001253890, exon 11 of 11)	3' UTR (NM_001253890, exon 11 of 11)	-22952.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-7869044-4	chr18	7868486	7869486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146298)	promoter-TSS (NM_001146298)	154.0	NM_001282093	225131.0	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13438610-4	chr10	13438107	13439107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	35789.0	NM_001195065	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-138143448-4	chr3	138142945	138143945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348196)	promoter-TSS (NM_001348196)	-3.0	NM_175389	108943.0	Mm.471692	NM_175389	ENSMUSG00000004127	Trmt10a	3110023L08Rik|AA794508|Rg9mtd2|Rnmtd2	tRNA methyltransferase 10A	protein-coding	11.0	35.0	26.0	14.0	36.5	17.5
Merged-chr19-10914512-4	chr19	10914005	10915005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009580, intron 11 of 11)	intron (NM_009580, intron 11 of 11)	6096.0	NM_009580	22786.0	Mm.24767	NM_009580	ENSMUSG00000024734	Zp1	-	zona pellucida glycoprotein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-7942791-2	chr15	7942291	7943291	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081402, intron 10 of 17)	MusHAL1|LINE|L1	127241.0	NM_001301357	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125145168-4	chr6	125144653	125145653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302779)	promoter-TSS (NM_001302779)	-71.0	NR_126495	320678.0	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	29.0	61.5	51.5	16.0	81.0	15.5
Merged-chr4-118999822-4	chr4	118999315	119000315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37848.0	NM_133892	100470.0	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98268295-2	chr12	98267795	98268795	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008152)	promoter-TSS (NM_008152)	-340.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-116990326-4	chr2	116989849	116990849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90197.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-53405285-4	chr9	53404799	53405799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029247)	promoter-TSS (NM_029247)	13.0	NM_029247	75311.0	Mm.26078	NM_029247	ENSMUSG00000005131	4930550C14Rik	AU017961	RIKEN cDNA 4930550C14 gene	protein-coding	1.0	4.5	1.0	0.0	4.5	0.0
Merged-chr6-135007834-4	chr6	135007343	135008343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3769.0	NM_026360	67755.0	Mm.166524	NM_026360	ENSMUSG00000030204	Ddx47	4930588A18Rik|C77285	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	protein-coding	17.0	66.5	49.5	25.0	71.5	56.5
Merged-chr1-156028551-4	chr1	156028057	156029057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144791, intron 4 of 6)	intron (NM_144791, intron 4 of 6)	6260.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	50.0	140.0	125.0	72.0	150.5	121.0
Merged-chr4-135945907-4	chr4	135945395	135946395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008254)	promoter-TSS (NM_008254)	-553.0	NM_008254	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41518701-4	chr10	41518221	41519221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016898)	promoter-TSS (NM_016898)	-779.0	NM_016898	53599.0	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43355377-4	chr5	43354864	43355864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120010.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	4.0	24.0	51.5	17.0	21.5	23.5
Merged-chr3-88745606-2	chr3	88745107	88746107	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018804, exon 4 of 4)	3' UTR (NM_018804, exon 4 of 4)	26992.0	NM_018804	229521.0	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	17.5	49.5	25.0	26.0	67.0	39.5
Merged-chr13-107889779-2	chr13	107889279	107890279	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145456, exon 1 of 15)	exon (NM_145456, exon 1 of 15)	285.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156718601-4	chr1	156718121	156719121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145413, intron 1 of 7)	CpG	289.0	NM_145413	215015.0	Mm.229107	NM_145413	ENSMUSG00000033557	Fam20b	C530043G21Rik|mKIAA0475	family with sequence similarity 20, member B	protein-coding	7.5	31.0	12.0	2.5	14.0	6.5
Merged-chr15-53130920-4	chr15	53130414	53131414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	215269.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-110598587-4	chr13	110598034	110599034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	203490.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124858764-4	chr2	124858256	124859256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	205175.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65075335-4	chr9	65074833	65075833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028906, intron 17 of 20)	intron (NM_028906, intron 17 of 20)	-26153.0	NM_020043	56741.0	Mm.209041	NM_020043	ENSMUSG00000032816	Igdcc4	DDM36|Nope	immunoglobulin superfamily, DCC subclass, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20314134-2	chr10	20313634	20314634	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025392, intron 1 of 12)	intron (NM_001025392, intron 1 of 12)	1665.0	NM_001025393	72567.0	Mm.294783	NM_153787	ENSMUSG00000037608	Bclaf1	2610102K23Rik|2700025J07Rik|2810454G14Rik|5730534O06Rik|AI450190|AW556225|Btf|mKIAA0164	BCL2-associated transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100005483-4	chr12	100004987	100005987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	40988.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113000806-4	chr12	113000297	113001297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028193)	promoter-TSS (NM_028193)	-176.0	NM_028193	72308.0	Mm.196721	NM_028193	ENSMUSG00000011158	Brf1	2510002F24Rik|GTF3B|TAF3C|TAFIII90|TFIIIB90|mTFIIIB90	BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-31211883-4	chr9	31211392	31212392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102456)	promoter-TSS (NM_001102456)	-44.0	NM_001102456	11804.0	Mm.19133	NM_009691	ENSMUSG00000031996	Aplp2	AI790698|APLP-2|CDEBP	amyloid beta (A4) precursor-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88332554-4	chr10	88332043	88333043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 4 of 6)	intron (NM_027878, intron 4 of 6)	24532.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128661337-4	chr4	128660840	128661840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	6638.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73901296-4	chr12	73900786	73901786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313920)	promoter-TSS (NM_001313920)	-38.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57011426-4	chr17	57010912	57011912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133801)	promoter-TSS (NM_133801)	-124.0	NM_133801	98053.0	Mm.24632	NM_133801	ENSMUSG00000002658	Gtf2f1	2810405L04Rik|C76800|RAP74	general transcription factor IIF, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119610806-2	chr13	119610306	119611306	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001039244)	TTS (NM_001039244)	-13013.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128438703-2	chr2	128438203	128439203	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9352.0	NR_028590	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	18.0	18.0	23.5	18.0	18.5	22.5
Merged-chr15-12233261-4	chr15	12232743	12233743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356498, intron 3 of 15)	intron (NM_001356498, intron 3 of 15)	28215.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-93821718-4	chr11	93821248	93822248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	64018.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	14.5	20.5	15.5	3.0	11.5	12.5
Merged-chr2-103785952-4	chr2	103785456	103786456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111292, intron 1 of 16)	intron (NM_001111292, intron 1 of 16)	11122.0	NM_001111290	53872.0	Mm.427589	NM_016739	ENSMUSG00000027184	Caprin1	AL022980|Caprin-1|Gpiap|Gpiap1|Mmgpip137|P137|rng105	cell cycle associated protein 1	protein-coding	13.0	19.5	16.0	15.0	20.0	13.0
Merged-chr2-84803130-2	chr2	84802630	84803630	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019949, intron 2 of 3)	intron (NM_019949, intron 2 of 3)	4302.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	2.5	0.5	0.0	0.0	0.0	1.5
Merged-chr18-35022469-4	chr18	35021966	35022966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68115.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-48815653-2	chr11	48815153	48816153	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145377, intron 1 of 5)	intron (NM_145377, intron 1 of 5)	1738.0	NM_145377	211007.0	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85468876-4	chr12	85468357	85469357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5033.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54971499-4	chr18	54970992	54971992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175751, intron 2 of 9)	Lx5c|LINE|L1	18688.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-33757801-4	chr1	33757297	33758297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145392)	promoter-TSS (NM_145392)	-47.0	NM_145392	213539.0	Mm.247037	NM_145392	ENSMUSG00000042215	Bag2	2610042A13Rik|BC016230	BCL2-associated athanogene 2	protein-coding	4.5	2.0	2.5	0.5	0.5	0.0
Merged-chr5-135632635-4	chr5	135632148	135633148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146002)	promoter-TSS (NM_146002)	-6.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	9.0	0.0	1.0	9.0	1.0	1.0
Merged-chr9-55253648-4	chr9	55253166	55254166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	intron (NM_032002, intron 3 of 7)	29959.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-108935796-2	chr7	108935296	108936296	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025344, intron 1 of 7)	intron (NM_025344, intron 1 of 7)	1381.0	NM_025344	66085.0	Mm.182962	NM_025344	ENSMUSG00000031029	Eif3f	0610037M02Rik|AA409853|Eif3s5	eukaryotic translation initiation factor 3, subunit F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84246414-4	chr15	84245898	84246898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	intron (NM_133167, intron 1 of 12)	14355.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	8.0	7.0	8.5	3.0	17.5	12.5
Merged-chr10-8878989-4	chr10	8878497	8879497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	B1F|SINE|Alu	7073.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	50.5	96.0	112.0	47.0	52.0	42.0
Merged-chr17-5606421-2	chr17	5605921	5606921	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	113821.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-17854707-4	chr5	17854206	17855206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	-4914.0	NM_001159556	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135485585-4	chr3	135485062	135486062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027288)	promoter-TSS (NM_027288)	-49.0	NM_027288	110173.0	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129801523-4	chr2	129801011	129802011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029452)	promoter-TSS (NR_029452)	-52.0	NR_029452	654409.0	Mm.305555	NR_029452		Stk35os1	4932416H05Rik	serine/threonine kinase 35, opposite strand 1	ncRNA	39.0	80.0	69.0	40.5	144.0	68.5
Merged-chr4-136116036-2	chr4	136115535	136116535	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27787.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0.0	13.5	12.5	5.5	21.5	13.0
Merged-chr2-136891534-4	chr2	136891061	136892061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001141946)	promoter-TSS (NM_001141946)	-33.0	NR_149746	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35769495-4	chr16	35768985	35769985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175111)	promoter-TSS (NM_175111)	-129.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	59.5	214.0	131.0	59.0	190.5	132.0
Merged-chr2-145813023-4	chr2	145812508	145813508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	26892.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109425816-4	chr11	109425308	109426308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025275)	promoter-TSS (NM_025275)	-138.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	131.0	315.5	221.5	187.0	358.0	261.5
Merged-chr12-108937691-4	chr12	108937191	108938191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	43419.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-117765027-4	chr12	117764524	117765524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78837.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	0.0	0.5	0.5	1.0	2.0	1.0
Merged-chr10-13008388-4	chr10	13007895	13008895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175102)	promoter-TSS (NM_175102)	-55.0	NM_175102	66125.0	Mm.29743	NM_175102	ENSMUSG00000078348	Sf3b5	10kDa|1110005L13Rik|AU043053|Sf3b10	splicing factor 3b, subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-43655053-4	chr6	43654553	43655553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 2 of 8)	intron (NM_013861, intron 2 of 8)	11225.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96561418-2	chr3	96560918	96561918	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023719, exon 8 of 8)	3' UTR (NM_023719, exon 8 of 8)	3461.0	NM_001009935	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	18.0	24.5	9.0	17.5	24.5	9.0
Merged-chr2-165321006-4	chr2	165320514	165321514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302752)	promoter-TSS (NM_001302752)	-188.0	NM_001302752	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-34787562-4	chr12	34787044	34788044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	129551.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	17.0	34.5	25.0	15.5	37.0	30.5
Merged-chr12-111456058-4	chr12	111455570	111456570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13409.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69507574-4	chr12	69507079	69508079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	-32029.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	25.0	13.0	26.5	14.5	19.0	29.0
Merged-chr6-53592514-4	chr6	53592032	53593032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172728, intron 1 of 6)	intron (NM_172728, intron 1 of 6)	19158.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	25.0	70.5	33.0	23.5	71.0	28.5
Merged-chr13-117028474-4	chr13	117027964	117028964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2948.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67526370-2	chr7	67525870	67526870	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028144, intron 8 of 8)	Lx8|LINE|L1	118866.0	NM_175124	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	35.0	63.0	40.0	62.0	73.5	108.0
Merged-chr9-107580692-4	chr9	107580194	107581194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019750)	promoter-TSS (NM_019750)	25.0	NM_019750	56441.0	Mm.10305	NM_019750	ENSMUSG00000079334	Nat6	AI225910|Fus2	N-acetyltransferase 6	protein-coding	46.0	71.0	66.5	37.0	53.0	78.5
Merged-chr3-88950086-4	chr3	88949603	88950603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_022994, exon 1 of 13)	5' UTR (NM_022994, exon 1 of 13)	179.0	NM_022994	65111.0	Mm.29028	NM_022994	ENSMUSG00000068921	Dap3	4921514D13Rik|DAP-3|MRP-S29|S29mt	death associated protein 3	protein-coding	12.0	32.5	32.5	12.5	30.5	24.0
Merged-chr10-8518605-1	chr10	8518105	8519105	+	1000.0	f1_c57bl6.idr	5' UTR (NM_177387, exon 1 of 8)	5' UTR (NM_177387, exon 1 of 8)	220.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	25.5	25.5	25.5	21.5	31.5	20.5
Merged-chr11-100622924-4	chr11	100622427	100623427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028024)	promoter-TSS (NM_028024)	-28.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61135385-4	chr10	61134873	61135873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009163, intron 2 of 14)	intron (NM_009163, intron 2 of 14)	12311.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-121028883-4	chr4	121028382	121029382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10684.0	NM_007741	12840.0	Mm.269384	NM_007741	ENSMUSG00000028626	Col9a2	AI427499|Col9a-2	collagen, type IX, alpha 2	protein-coding	3.5	0.0	1.0	0.0	10.0	4.0
Merged-chr7-145304359-1	chr7	145303859	145304859	+	1000.0	f1_balb.idr	intron (NM_145379, intron 2 of 2)	intron (NM_145379, intron 2 of 2)	3450.0	NM_145379	211577.0	Mm.215151	NM_145379	ENSMUSG00000031070	Mrgprf	BC019711|Mgrc|MrgF	MAS-related GPR, member F	protein-coding	0.0	11.5	8.0	0.0	6.5	7.0
Merged-chr12-79140984-4	chr12	79140476	79141476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009705, intron 2 of 7)	intron (NM_009705, intron 2 of 7)	10188.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	18.5	62.0	33.0	30.0	52.0	39.5
Merged-chr3-65927915-4	chr3	65927413	65928413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30336.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	2.5	5.0	6.0	1.5	9.5	4.0
Merged-chr9-21411837-4	chr9	21411396	21412396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021888)	promoter-TSS (NM_021888)	59.0	NM_021888	60507.0	Mm.436579	NM_021888	ENSMUSG00000002825	Qtrt1	2610028E17Rik|Tgt	queuine tRNA-ribosyltransferase catalytic subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21694739-4	chr16	21694247	21695247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001881)	promoter-TSS (NM_001001881)	-82.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13677673-4	chr8	13677172	13678172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009025)	promoter-TSS (NM_009025)	-85.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-16591690-4	chr12	16591188	16592188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355598, intron 1 of 20)	intron (NM_001355598, intron 1 of 20)	-1918.0	NM_172950	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	2.0	15.5	18.5	7.0	15.0	19.0
Merged-chr4-63541245-4	chr4	63540759	63541759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3506.0	NM_024173	66290.0	Mm.371615	NM_024173	ENSMUSG00000039105	Atp6v1g1	1810024D14Rik|AA960677|ATP6J|Atp6g1|VAG1|Vma10	ATPase, H+ transporting, lysosomal V1 subunit G1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136949740-4	chr5	136949206	136950206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3569.0	NM_001163243	66437.0	Mm.25849	NM_025562	ENSMUSG00000019054	Fis1	2010003O14Rik|Ttc11	fission, mitochondrial 1	protein-coding	6.0	30.5	18.0	20.0	8.0	18.0
Merged-chr17-29008130-4	chr17	29007632	29008632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134115)	promoter-TSS (NM_134115)	-137.0	NM_001357173	106504.0	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34506892-4	chr18	34506387	34507387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146084)	promoter-TSS (NM_146084)	-64.0	NM_146084	225358.0	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	33.0	44.0	24.5	49.0	80.5	38.0
Merged-chr2-3668905-4	chr2	3668397	3669397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44561.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-87842685-4	chr10	87842188	87843188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5|LINE|L1	-15577.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38643896-4	chr2	38643351	38644351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011187)	promoter-TSS (NM_011187)	55.0	NM_011187	19177.0	Mm.389251	NM_011187	ENSMUSG00000026750	Psmb7	AU020723|MC14	proteasome (prosome, macropain) subunit, beta type 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83859914-4	chr7	83859438	83860438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24403.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	20.0	42.0	36.5	31.5	53.5	36.5
Merged-chr2-84647772-2	chr2	84647272	84648272	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007615, intron 1 of 19)	intron (NM_007615, intron 1 of 19)	1708.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	4.0	18.0	13.0	3.0	14.5	13.0
Merged-chr4-139382544-4	chr4	139382056	139383056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160319, intron 1 of 105)	intron (NM_001160319, intron 1 of 105)	1897.0	NM_001160319	69116.0	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	33.0	56.0	31.0	29.0	45.0	56.5
Merged-chr17-6783174-4	chr17	6782701	6783701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009510)	promoter-TSS (NM_009510)	-421.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	12.0	47.5	55.5	14.0	60.5	57.0
Merged-chr17-21008908-4	chr17	21008401	21009401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145483)	promoter-TSS (NM_145483)	-40.0	NM_145483	224585.0	Mm.296036	NM_145483	ENSMUSG00000067942	Zfp160	6720480D16Rik|F11|HKr18|HZF5|KR18|mKIAA1611|mszf47	zinc finger protein 160	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148591402-4	chr4	148590836	148591836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009272)	promoter-TSS (NM_009272)	-177.0	NM_009272	20810.0	Mm.10	NM_009272	ENSMUSG00000006442	Srm	AA407669|SpdST|SpdSy	spermidine synthase	protein-coding	19.0	29.5	17.5	3.5	8.0	14.0
Merged-chr6-54946738-4	chr6	54946266	54947266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171007, intron 3 of 11)	ORR1G|LTR|ERVL-MaLR	24895.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99172256-4	chr10	99171750	99172750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	64115.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65663909-4	chr17	65663402	65664402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 6 of 6)	intron (NM_133685, intron 6 of 6)	-21698.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-30811098-4	chr10	30810599	30811599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7773.0	NM_001358842	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32947444-4	chr17	32946969	32947969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130882)	promoter-TSS (NM_130882)	-108.0	NM_130882	170716.0	Mm.254838	NM_130882	ENSMUSG00000024055	Cyp4f13	0610030I10Rik|Cypf13	cytochrome P450, family 4, subfamily f, polypeptide 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41349003-4	chr4	41348523	41349523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290454)	promoter-TSS (NM_001290454)	27.0	NM_023305	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158144927-1	chr2	158144427	158145427	+	1000.0	f0_balb.idr	intron (NM_009373, intron 1 of 12)	intron (NM_009373, intron 1 of 12)	1465.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155892246-4	chr4	155891789	155892789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033490)	promoter-TSS (NM_001033490)	414.0	NM_207223	140500.0	Mm.219591	NM_207223	ENSMUSG00000029033	Acap3	Centb5|Kiaa1716-hp|mKIAA1716	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	protein-coding	74.0	97.5	80.5	88.5	99.0	85.5
Merged-chr3-19188226-4	chr3	19187733	19188733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356295)	promoter-TSS (NM_001356295)	-62.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-9404206-1	chr11	9403706	9404706	+	1000.0	f0_balb.idr	intron (NM_178259, intron 35 of 61)	intron (NM_178259, intron 35 of 61)	212264.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	4.0	1.0	0.0	10.0	5.5	3.5
Merged-chr8-71521830-4	chr8	71521333	71522333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10064.0	NM_032398	84094.0	Mm.260768	NM_032398	ENSMUSG00000034845	Plvap	MECA32|Pv1	plasmalemma vesicle associated protein	protein-coding	0.5	0.5	1.0	6.5	1.5	0.0
Merged-chr11-69618954-2	chr11	69618454	69619454	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1049.0	NM_011367	20415.0	Mm.1431	NM_011367	ENSMUSG00000005202	Shbg	ABP	sex hormone binding globulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36938735-4	chr15	36938245	36939245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	68657.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-89021079-4	chr11	89020574	89021574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009546)	TTS (NM_009546)	21671.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	102.0	292.5	174.0	126.0	281.0	222.0
Merged-chr14-26994425-4	chr14	26993967	26994967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5895.0	NM_010420	15209.0	Mm.4802	NM_010420	ENSMUSG00000040726	Hesx1	HES-1|Rpx	homeobox gene expressed in ES cells	protein-coding	6.5	7.0	13.0	4.0	1.0	3.5
Merged-chr9-107726451-2	chr9	107725951	107726951	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-15976.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69901684-4	chr11	69901195	69902195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316696)	promoter-TSS (NM_001316696)	-121.0	NM_001291118	216860.0	Mm.268347	NM_001013414	ENSMUSG00000047284	Neurl4	-	neuralized E3 ubiquitin protein ligase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141444665-4	chr4	141444154	141445154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009541)	promoter-TSS (NM_009541)	-19.0	NM_009541	22642.0	Mm.389590	NM_009541	ENSMUSG00000006215	Zbtb17	AA589413|Lp-1|Miz1|Zfp100|mZ13	zinc finger and BTB domain containing 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84235743-4	chr8	84235241	84236241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172503, intron 1 of 13)	intron (NM_172503, intron 1 of 13)	1301.0	NM_172503	212168.0	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46395471-4	chr8	46394909	46395909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-75628.0	NM_007981	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-33599568-4	chr8	33599046	33600046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017374)	promoter-TSS (NM_017374)	-75.0	NM_017374	19053.0	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	15.0	26.0	24.5	0.0	17.0	7.0
Merged-chr17-87571814-4	chr17	87571302	87572302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64177.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0.0	6.5	5.0	0.0	3.0	1.0
Merged-chr3-31106722-4	chr3	31106221	31107221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039090, intron 2 of 6)	intron (NM_001039090, intron 2 of 6)	11663.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87503067-4	chr6	87502542	87503542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	-6715.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	23.5	20.0	16.0	27.0	35.5	22.5
Merged-chr10-60744744-3	chr10	60744249	60745249	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 2 of 5)	intron (NM_023596, intron 2 of 5)	8033.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-15948474-3	chr16	15948011	15949011	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 9 of 18)	intron (NM_001355731, intron 9 of 18)	61225.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	3.5	0.0	0.0	3.5	0.0	0.0
Merged-chr1-36445345-4	chr1	36444830	36445830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310517)	promoter-TSS (NM_001310517)	-59.0	NM_001310517	214895.0	Mm.287854	NM_001013374	ENSMUSG00000001143	Lman2l	A630028F14Rik|VIP36-like|VIPL	lectin, mannose-binding 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47878033-1	chr6	47877533	47878533	+	1000.0	f0_balb.idr	intron (NM_146175, intron 1 of 7)	CpG	478.0	NM_146175	101095.0	Mm.440186	NM_146175	ENSMUSG00000025821	Zfp282	AI449432|C81429|E430019K09Rik|HUB1	zinc finger protein 282	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124828377-2	chr6	124827877	124828877	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013700, intron 1 of 19)	intron (NM_013700, intron 1 of 19)	1107.0	NM_001326594	22225.0	Mm.3571	NM_013700	ENSMUSG00000038429	Usp5	AA407472|ISOT|ISOT-1|Ucht	ubiquitin specific peptidase 5 (isopeptidase T)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10383621-4	chr17	10383125	10384125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	59023.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118148112-4	chr11	118147616	118148616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-18897.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-60180430-4	chr1	60179922	60180922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173444)	promoter-TSS (NM_173444)	-177.0	NM_173444	269198.0	Mm.205224	NM_173444	ENSMUSG00000073664	Nbeal1	2310076G13Rik|A530050O19Rik|A530083I02Rik|AI662228|ALS2CR17	neurobeachin like 1	protein-coding	116.5	312.0	256.0	81.5	217.5	238.0
Merged-chr4-41135951-4	chr4	41135469	41136469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026275)	promoter-TSS (NM_026275)	-52.0	NM_026275	67615.0	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69004944-4	chr3	69004434	69005434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026641)	promoter-TSS (NM_026641)	196.0	NM_133786	70099.0	Mm.206841	NM_133786	ENSMUSG00000034349	Smc4	2500002A22Rik|C79747|SMC-4|Smc4l1	structural maintenance of chromosomes 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-20681285-4	chr5	20680762	20681762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 22 of 22)	intron (NM_001170746, intron 22 of 22)	200862.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160276157-4	chr2	160275671	160276671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51323.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	8.0	9.0	3.0	6.5	14.0	1.0
Merged-chr13-111896475-4	chr13	111895980	111896980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28544.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-10983856-4	chr4	10983362	10984362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23757.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	32.0	23.0	27.0	24.0	15.0	4.0
Merged-chr13-106936927-4	chr13	106936427	106937427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029665)	promoter-TSS (NM_029665)	31.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57113112-4	chr17	57112614	57113614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7172.0	NR_033508	100169874.0	Mm.76700	NR_033508	ENSMUSG00000079414	Gm11110	-	predicted gene 11110	ncRNA	0.0	3.0	0.5	0.0	2.5	0.0
Merged-chr15-73731910-2	chr15	73731410	73732410	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	6980.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-88973937-4	chr11	88973430	88974430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016706)	promoter-TSS (NM_016706)	-5.0	NM_016706	12812.0	Mm.268004	NM_016706	ENSMUSG00000033983	Coil	C79982|Cln80|p80|p80-coilin	coilin	protein-coding	14.5	34.5	14.0	5.0	44.0	15.5
Merged-chr10-120201526-4	chr10	120201040	120202040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028679)	promoter-TSS (NM_028679)	57.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156002549-4	chr1	156002053	156003053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29298.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	93.0	171.0	147.5	51.5	111.0	71.0
Merged-chr13-97241099-4	chr13	97240578	97241578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007930)	promoter-TSS (NM_007930)	-27.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-18910564-4	chr7	18910049	18911049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033314)	promoter-TSS (NM_001033314)	-145.0	NM_001033314	232933.0	Mm.333624	NM_001033314	ENSMUSG00000074358	Ccdc61	C530028I08Rik|Gm159	coiled-coil domain containing 61	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104788825-4	chr3	104788355	104789355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291859)	promoter-TSS (NM_001291859)	-179.0	NM_007484	11853.0	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79120299-4	chr11	79119796	79120796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	26177.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34464781-4	chr1	34464283	34465283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011206, intron 5 of 14)	L1MB8|LINE|L1	5037.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95413883-4	chr11	95413382	95414382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025287)	promoter-TSS (NM_025287)	-201.0	NM_025287	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20477690-4	chr11	20477199	20478199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65554.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	11.0	37.0	33.5	7.0	24.5	25.0
Merged-chr8-84665062-4	chr8	84664586	84665586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2234.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	26.0	41.5	24.0	19.0	52.5	31.5
Merged-chr2-122765335-4	chr2	122764810	122765810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162503)	promoter-TSS (NM_001162503)	-49.0	NM_001162503	59010.0	Mm.28986	NM_021507	ENSMUSG00000005803	Sqor	0610039J17Rik|4930557M22Rik|Sqrdl	sulfide quinone oxidoreductase	protein-coding	110.0	318.5	186.0	122.0	221.5	215.0
Merged-chr10-75837489-4	chr10	75836983	75837983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2602.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180973888-4	chr1	180973380	180974380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144794, intron 22 of 22)	(CAGA)n|Simple_repeat|Simple_repeat	31362.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53714159-4	chr4	53713629	53714629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139309)	promoter-TSS (NM_139309)	-53.0	NM_139309	246179.0	Mm.247210	NM_139309	ENSMUSG00000028414	Fktn	D830030O17Rik|Fcmd	fukutin	protein-coding	0.0	3.0	4.0	0.0	0.0	2.5
Merged-chr4-133574784-4	chr4	133574315	133575315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172876)	promoter-TSS (NM_172876)	70.0	NM_172876	242691.0	Mm.40110	NM_172876	ENSMUSG00000028850	Gpatch3	D930035B09Rik|Gpatc3	G patch domain containing 3	protein-coding	71.0	103.5	105.0	78.0	209.5	157.5
Merged-chr10-8874818-4	chr10	8874305	8875305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	11265.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	362.5	707.0	617.0	304.0	730.0	521.5
Merged-chr1-60343365-4	chr1	60342905	60343905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030013, exon 1 of 13)	exon (NM_030013, exon 1 of 13)	105.0	NM_001313721	77951.0	Mm.197640	NM_030013	ENSMUSG00000049439	Cyp20a1	A930011N14Rik|Cypm	cytochrome P450, family 20, subfamily a, polypeptide 1	protein-coding	20.0	74.0	38.5	16.5	48.0	19.0
Merged-chr2-132463610-4	chr2	132463104	132464104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-27124.0	NR_028286	70371.0	Mm.394667	NR_028286	ENSMUSG00000086379	1700026D11Rik	-	RIKEN cDNA 1700026D11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113076684-7	chr6	113076151	113077151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028385)	promoter-TSS (NM_028385)	593.0	NR_027010	14910.0	Mm.280950	NR_027008	ENSMUSG00000086429	Gt(ROSA)26Sor	AV258896|Gtrgeo26|Gtrosa26|R26|ROSA26|Thumpd3as1	gene trap ROSA 26, Philippe Soriano	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92433646-4	chr16	92433099	92434099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	32570.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71272029-2	chr6	71271529	71272529	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145568)	promoter-TSS (NM_145568)	10.0	NM_145568	57896.0	Mm.250569	NM_145568	ENSMUSG00000053012	Krcc1	AA792894	lysine-rich coiled-coil 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12473473-4	chr19	12472947	12473947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172442, intron 7 of 8)	intron (NM_172442, intron 7 of 8)	12668.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	44.0	88.5	61.0	20.0	31.0	24.5
Merged-chr14-117625512-4	chr14	117625032	117626032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011821, intron 4 of 8)	intron (NM_011821, intron 4 of 8)	328315.0	NR_105747	102465148.0		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5570429-4	chr17	5569946	5570946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	77846.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88705966-4	chr1	88705466	88706466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3775.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32222239-2	chr19	32221739	32222739	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	-11226.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91231975-4	chr1	91231473	91232473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18331.0	NM_001355763	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr8-106338082-4	chr8	106337596	106338596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021491)	promoter-TSS (NM_021491)	-108.0	NM_021491	58994.0	Mm.23298	NM_021491	ENSMUSG00000031906	Smpd3	4631433G07Rik|AI427456|AW537966|fro|nSMase2	sphingomyelin phosphodiesterase 3, neutral	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79428509-2	chr2	79428009	79429009	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048176, intron 1 of 12)	intron (NM_001048176, intron 1 of 12)	479.0	NM_001048176	228094.0	Mm.440704	NM_001033295	ENSMUSG00000075256	Cerkl	Gm1958|Rp26	ceramide kinase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-36315067-4	chr13	36314570	36315570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 3 of 5)	intron (NM_001039189, intron 3 of 5)	197427.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	2.0	13.0	15.5	4.0	6.5	8.5
Merged-chr13-100775888-4	chr13	100775374	100776374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021886)	promoter-TSS (NM_021886)	25.0	NM_021886	26886.0	Mm.273502	NM_021886	ENSMUSG00000045273	Cenph	1700021I11Rik|2410018A12Rik|2610042E16Rik|2810046K12Rik|AU044255|CENP-H|ENP	centromere protein H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-3541675-4	chr13	3541175	3542175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008112, intron 1 of 10)	intron (NM_008112, intron 1 of 10)	3600.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	9.0	8.5	14.0	3.0	11.0	6.0
Merged-chr8-11039038-4	chr8	11038550	11039550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046017, intron 1 of 4)	intron (NR_046017, intron 1 of 4)	-30620.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83064256-4	chr8	83063759	83064759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 6 of 6)	intron (NM_177378, intron 6 of 6)	-101093.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	43.5	74.0	105.5	35.0	43.5	75.0
Merged-chr8-4678476-4	chr8	4677954	4678954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	65284.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21289820-4	chr16	21289326	21290326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046162, intron 1 of 4)	intron (NR_046162, intron 1 of 4)	7046.0	NR_046162	328646.0	Mm.404748	NR_046162	ENSMUSG00000096918	Gm16863	A830060N17	predicted gene, 16863	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108722283-4	chr3	108721727	108722727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029522)	promoter-TSS (NM_029522)	72.0	NM_029522	76123.0	Mm.226941	NM_029522	ENSMUSG00000027883	Gpsm2	6230410J09Rik|LGN|Pins	G-protein signalling modulator 2 (AGS3-like, C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-93996654-4	chr13	93996153	93997153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61143.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8713828-11	chr19	8713306	8714306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008577)	promoter-TSS (NM_008577)	91.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	7.0	69.5	29.0	17.5	28.5	39.0
Merged-chr8-25720085-4	chr8	25719585	25720585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_121643)	promoter-TSS (NR_121643)	37.0	NR_121643	71910.0	Mm.385055	NM_028000	ENSMUSG00000031570	Plpp5	1810019D05Rik|2310022A04Rik|AW045471|Ppapdc1|Ppapdc1b	phospholipid phosphatase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62861128-2	chr9	62860628	62861628	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001102468, intron 2 of 3)	intron (NM_001102468, intron 2 of 3)	896.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-78490415-4	chr16	78489913	78490913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69903.0	NR_040569	75818.0	Mm.410817	NR_040569		4930478L05Rik	-	RIKEN cDNA 4930478L05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34859902-4	chr18	34859404	34860404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1303.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-56313806-4	chr8	56313329	56314329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008278, intron 4 of 6)	intron (NM_008278, intron 4 of 6)	19277.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	6.5	36.5	18.0	4.0	17.5	4.5
Merged-chr11-98754208-4	chr11	98753708	98754708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178060, intron 2 of 8)	intron (NM_178060, intron 2 of 8)	12423.0	NM_001313983	21833.0	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116671609-4	chr11	116671101	116672101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027819)	promoter-TSS (NR_027819)	-59.0	NR_027821	66293.0	Mm.432051	NM_025472	ENSMUSG00000020812	1810032O08Rik	-	RIKEN cDNA 1810032O08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87338132-4	chr3	87337624	87338624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-19757.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	66.0	116.0	137.5	45.0	111.5	101.0
Merged-chr17-27204496-4	chr17	27203992	27204992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146075)	promoter-TSS (NM_146075)	-54.0	NM_146075	224640.0	Mm.29689	NM_146075	ENSMUSG00000044857	Lemd2	BC026588|Lem2|NET25	LEM domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-68582112-4	chr13	68581614	68582614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131892)	promoter-TSS (NR_131892)	-10.0	NM_001308475	210009.0	Mm.205514	NM_172480	ENSMUSG00000034617	Mtrr	4732420G08|MSR	5-methyltetrahydrofolate-homocysteine methyltransferase reductase	protein-coding	63.5	162.5	128.5	27.0	53.0	66.0
Merged-chr1-138614703-4	chr1	138614191	138615191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 1 of 9)	intron (NM_021605, intron 1 of 9)	5066.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	23.5	26.0	40.5	26.5	25.5	45.0
Merged-chr3-136725582-5	chr3	136725034	136726034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	55468.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	29.0	51.0	28.5	16.5	39.5	19.5
Merged-chr5-5559553-4	chr5	5559045	5560045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357031)	promoter-TSS (NM_001357031)	-4.0	NM_001357031	207704.0	Mm.323984	NM_153116	ENSMUSG00000040464	Gtpbp10	4930545J22Rik|BC034507	GTP-binding protein 10 (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119862201-4	chr8	119861727	119862727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146219)	promoter-TSS (NM_146219)	-78.0	NM_146219	234796.0	Mm.86446	NM_146219	ENSMUSG00000031828	Klhl36	-	kelch-like 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101302311-4	chr11	101301818	101302818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019584)	promoter-TSS (NM_019584)	-32.0	NM_001359821	56208.0	Mm.178947	NM_019584	ENSMUSG00000035086	Becn1	Atg6	beclin 1, autophagy related	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9599531-4	chr13	9599026	9600026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 17 of 36)	ORR1E|LTR|ERVL-MaLR	164284.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55299545-4	chr12	55299046	55300046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021529, intron 2 of 13)	intron (NM_021529, intron 2 of 13)	-3091.0	NM_025373	66132.0	Mm.383213	NM_025373	ENSMUSG00000021023	1110008L16Rik	Kiaa0391|Mrpp3|mKIAA0391	RIKEN cDNA 1110008L16 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95985440-4	chr3	95984950	95985950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045872)	promoter-TSS (NR_045872)	-60.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	41.5	136.5	81.0	81.5	210.0	100.0
Merged-chr3-116008245-4	chr3	116007748	116008748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023214)	promoter-TSS (NM_023214)	-49.0	NM_001163514	58193.0	Mm.41739	NM_021388	ENSMUSG00000027963	Extl2	3000001D04Rik|AW146439	exostoses (multiple)-like 2	protein-coding	14.0	15.0	21.5	14.0	15.0	20.5
Merged-chr11-70221087-5	chr11	70220531	70221531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172371)	promoter-TSS (NM_172371)	-37.0	NM_172371	69309.0	Mm.93266	NM_172371	ENSMUSG00000044367	Slc16a13	1700007D07Rik	solute carrier family 16 (monocarboxylic acid transporters), member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128374646-3	chr10	128374174	128375174	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2450.0	NM_172790	237615.0	Mm.440177	NM_172790	ENSMUSG00000014498	Ankrd52	6430544C07|G431002C21Rik	ankyrin repeat domain 52	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66946379-2	chr9	66945882	66946882	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001361106)	promoter-TSS (NM_001361106)	-31.0	NM_001361106	67941.0	Mm.30120	NM_026467	ENSMUSG00000036781	Rps27l	1810034D23Rik	ribosomal protein S27-like	protein-coding	21.0	27.0	27.5	13.5	22.0	27.0
Merged-chr2-13537886-3	chr2	13537378	13538378	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010067, intron 1 of 10)	intron (NM_010067, intron 1 of 10)	6786.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46160282-4	chr17	46159804	46160804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019581)	promoter-TSS (NM_019581)	-728.0	NM_019581	56055.0	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-23862944-2	chr19	23862428	23863428	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177034, intron 1 of 12)	MLT1E2|LTR|ERVL-MaLR	104052.0	NM_177034	319924.0	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	0.0	0.5	1.5	1.5	0.0	0.0
Merged-chr2-33754206-2	chr2	33753706	33754706	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 8 of 9)	intron (NM_175184, intron 8 of 9)	-51610.0	NR_045729	320482.0	Mm.442057	NR_045729	ENSMUSG00000086484	Nron	A630071L07Rik|Gm24353	non-protein coding RNA, repressor of NFAT	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-17728826-4	chr18	17728330	17729330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147840.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-162968554-2	chr2	162968054	162969054	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081338, intron 20 of 22)	intron (NM_001081338, intron 20 of 22)	-18927.0	NM_001291154	27219.0	Mm.26462	NM_013731	ENSMUSG00000017868	Sgk2	AI098171|AW146006|Sgkl	serum/glucocorticoid regulated kinase 2	protein-coding	1.5	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173426536-4	chr1	173426043	173427043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 1 of 8)	intron (NM_001013779, intron 1 of 8)	5939.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	86.5	200.5	124.0	84.5	173.5	106.5
Merged-chr11-119428958-3	chr11	119428459	119429459	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38487.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	9.0	18.5	3.5	0.0	8.5	3.0
Merged-chr15-58034178-5	chr15	58033658	58034658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029418, exon 1 of 6)	exon (NM_029418, exon 1 of 6)	136.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142561722-4	chr3	142561220	142562220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289492, intron 2 of 11)	intron (NM_001289492, intron 2 of 11)	1364.0	NM_001289493	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	19.5	45.5	43.5	18.5	63.0	40.0
Merged-chr9-22125803-4	chr9	22125308	22126308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007388)	TTS (NM_007388)	4790.0	NM_007388	11433.0	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122564704-6	chr8	122564189	122565189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-3326.0	NM_026014	67177.0	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	18.5	55.0	39.5	14.5	33.5	15.5
Merged-chr4-141076829-4	chr4	141076355	141077355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149724, intron 1 of 8)	intron (NR_149724, intron 1 of 8)	1502.0	NR_149724	66147.0	Mm.21187	NM_025383	ENSMUSG00000028923	Necap2	1110005F07Rik|AA409105|C78898|NECAP-2	NECAP endocytosis associated 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122097372-4	chr10	122096871	122097871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153059)	promoter-TSS (NM_153059)	-269.0	NM_153059	216395.0	Mm.236764	NM_153059	ENSMUSG00000034620	Tmem5	6330415D21Rik	transmembrane protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36712043-4	chr5	36711516	36712516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15995.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	23.5	15.5	17.0	8.5	16.0	22.0
Merged-chr19-5567605-4	chr19	5567159	5568159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033448)	promoter-TSS (NM_001033448)	-365.0	NM_001362046	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84335656-4	chr10	84335178	84336178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	104793.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-121457104-4	chr2	121456609	121457609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026318)	promoter-TSS (NM_026318)	21.0	NM_026318	67693.0	Mm.330525	NM_026318	ENSMUSG00000027245	Hypk	2310003F16Rik|HSPC136	huntingtin interacting protein K	protein-coding	30.0	31.0	30.5	32.0	34.0	30.0
Merged-chr11-94327966-4	chr11	94327482	94328482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146024)	promoter-TSS (NM_146024)	-19.0	NM_027799	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-59262939-4	chr3	59262441	59263441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357008)	promoter-TSS (NM_001357008)	44.0	NM_027571	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	63.0	87.0	67.5	66.5	132.0	81.0
Merged-chr5-31201208-4	chr5	31200710	31201710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177901, intron 1 of 2)	intron (NM_001177901, intron 1 of 2)	832.0	NM_001177901	101023.0	Mm.45033	NM_175311	ENSMUSG00000043059	Zfp513	AW990386|D430028M17Rik|Znf513	zinc finger protein 513	protein-coding	20.0	49.5	24.0	15.0	25.0	24.0
Merged-chr7-84679464-4	chr7	84678973	84679973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360579)	promoter-TSS (NM_001360579)	-77.0	NM_001360581	65098.0	Mm.209349	NM_022985	ENSMUSG00000030629	Zfand6	3110005P07Rik|Awp1|Za20d3	zinc finger, AN1-type domain 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4299758-4	chr19	4299275	4300275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	6447.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-8111756-4	chr14	8111259	8112259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	13548.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100609054-4	chr11	100608542	100609542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019795, intron 1 of 13)	MTD|LTR|ERVL-MaLR	11126.0	NM_019795	56354.0	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91738563-4	chr12	91738055	91739055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 3 of 6)	ORR1D2|LTR|ERVL-MaLR	47881.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-68362590-4	chr15	68362094	68363094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21305.0	NR_029718	387228.0		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	3.5	6.0	4.0	1.0	10.5	7.5
Merged-chr17-26537762-4	chr17	26537250	26538250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23762.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	122.5	244.0	177.0	79.0	210.5	140.0
Merged-chr11-104367953-4	chr11	104367442	104368442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 5 of 14)	B1_Mm|SINE|Alu	74349.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131911449-1	chr1	131910949	131911949	+	1000.0	f0_c57.idr	intron (NM_001145804, intron 1 of 6)	intron (NM_001145804, intron 1 of 6)	991.0	NM_175294	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135744272-4	chr5	135743771	135744771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172541)	promoter-TSS (NM_172541)	-99.0	NM_172541	215210.0	Mm.11688	NM_172541	ENSMUSG00000039886	Tmem120a	2010310D06Rik|Tmpit	transmembrane protein 120A	protein-coding	1.0	5.5	2.5	1.0	10.5	2.0
Merged-chr11-116131135-4	chr11	116130641	116131641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178802)	promoter-TSS (NM_178802)	-13.0	NM_178802	338364.0	Mm.439976	NM_178802	ENSMUSG00000054517	Trim65	4732463G12Rik	tripartite motif-containing 65	protein-coding	56.5	130.5	101.0	83.0	157.5	111.0
Merged-chr10-126978588-4	chr10	126978100	126979100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113470)	promoter-TSS (NM_001113470)	-117.0	NM_001113470	52468.0	Mm.29490	NM_146012	ENSMUSG00000078429	Ctdsp2	AI586070|D10Ertd73e|OS-4|OS4|SCP2	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50588475-2	chr6	50587975	50588975	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027564, intron 4 of 9)	intron (NM_027564, intron 4 of 9)	8115.0	NM_027564	70821.0	Mm.157323	NM_027564	ENSMUSG00000029828	4921507P07Rik	TISP74	RIKEN cDNA 4921507P07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128806782-4	chr2	128806290	128807290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11513.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	18.0	5.5	8.0	16.0	16.0	6.0
Merged-chr18-84589113-4	chr18	84588613	84589613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 1 of 8)	CpG	391.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155098947-5	chr1	155098468	155099468	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010500, exon 1 of 1)	exon (NM_010500, exon 1 of 1)	668.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45448481-2	chr4	45447968	45448968	+	1000.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_001033306, intron 3 of 5)	URR1B|DNA|hAT-Charlie	-39702.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	31.0	55.5	35.0	1.0	2.5	4.0
Merged-chr15-78815927-4	chr15	78815474	78816474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-12932.0	NM_130859	105844.0	Mm.17629	NM_130859	ENSMUSG00000033170	Card10	AI449026|Bimp1|Carma3	caspase recruitment domain family, member 10	protein-coding	2.0	32.0	11.0	3.5	27.5	16.5
Merged-chr9-53536813-4	chr9	53536327	53537327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007499)	promoter-TSS (NM_007499)	-156.0	NM_007499	11920.0	Mm.5088	NM_007499	ENSMUSG00000034218	Atm	AI256621|C030026E19Rik	ataxia telangiectasia mutated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98259473-4	chr12	98258979	98259979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008079)	promoter-TSS (NM_008079)	-20.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19832055-4	chr7	19831574	19832574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9319.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-72411494-4	chr4	72410976	72411976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	210232.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3418955-4	chr12	3418449	3419449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030694, intron 1 of 2)	intron (NR_030694, intron 1 of 2)	7798.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45333667-4	chr7	45333182	45334182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175130)	promoter-TSS (NM_175130)	98.0	NM_175130	68667.0	Mm.439890	NM_175130	ENSMUSG00000038260	Trpm4	1110030C19Rik|AW047689|LTRPC4|LTrpC-4|TRPM4B	transient receptor potential cation channel, subfamily M, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167906968-4	chr2	167906459	167907459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-25368.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167886699-4	chr2	167886202	167887202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45625.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60878014-2	chr11	60877514	60878514	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168507, intron 1 of 2)	intron (NM_001168507, intron 1 of 2)	1024.0	NM_173453	216821.0	Mm.28063	NM_173453	ENSMUSG00000043284	Tmem11	5730466P16Rik|AA409091	transmembrane protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138187430-4	chr5	138186916	138187916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178612)	promoter-TSS (NM_178612)	35.0	NM_001356602	21343.0	Mm.248517	NM_009315	ENSMUSG00000036980	Taf6	80kDa|AW549759|TAF(II)80|TAFII70|Taf2e|p80	TATA-box binding protein associated factor 6	protein-coding	8.0	19.5	2.5	0.5	9.0	9.5
Merged-chr5-147059505-4	chr5	147058986	147059986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	17086.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	8.5	66.5	32.5	182.0	362.5	285.0
Merged-chr5-99221655-2	chr5	99221155	99222155	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 12 of 13)	intron (NM_181318, intron 12 of 13)	31272.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110117314-5	chr9	110116866	110117866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001252682, exon 1 of 23)	5' UTR (NM_001252682, exon 1 of 23)	250.0	NM_001252682	72831.0	Mm.276305	NM_133347	ENSMUSG00000032480	Dhx30	2810477H02Rik|C130058C04Rik|Ddx30|HELG|Ret-CoR	DEAH (Asp-Glu-Ala-His) box polypeptide 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4812822-4	chr7	4812318	4813318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133777)	promoter-TSS (NM_133777)	-478.0	NM_133777	77891.0	Mm.389787	NM_133777	ENSMUSG00000060860	Ube2s	0910001J09Rik|6720465F12Rik|AA409170|E2-EPF	ubiquitin-conjugating enzyme E2S	protein-coding	213.5	419.0	302.5	171.0	383.0	245.0
Merged-chr2-91071169-2	chr2	91070669	91071669	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026721)	promoter-TSS (NM_026721)	-854.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	5.5	13.0	11.0	8.0	13.0	11.0
Merged-chr12-55398710-4	chr12	55398209	55399209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011968)	promoter-TSS (NM_011968)	-116.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105879876-2	chr5	105879376	105880376	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030777, intron 2 of 9)	intron (NR_030777, intron 2 of 9)	3308.0	NM_018759	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100616019-4	chr15	100615533	100616533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045701)	promoter-TSS (NR_045701)	371.0	NM_011873	23994.0	Mm.486175	NM_011873	ENSMUSG00000000346	Dazap2	AI314727|Brbp|Gcap28|Prtb|gt6-12|mKIAA0058	DAZ associated protein 2	protein-coding	101.5	339.5	270.0	119.0	284.5	301.0
Merged-chr9-110656559-4	chr9	110656074	110657074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028312)	promoter-TSS (NM_028312)	71.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	5.5	25.0	7.0	4.5	12.0	14.0
Merged-chr7-126759474-4	chr7	126758966	126759966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011952)	promoter-TSS (NM_011952)	-160.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139616847-4	chr4	139616327	139617327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_183148, exon 12 of 12)	3' UTR (NM_183148, exon 12 of 12)	-6067.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	40.0	123.5	99.5	38.5	101.5	72.5
Merged-chr3-94456657-4	chr3	94456156	94457156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13320.0	NM_030116	78523.0	Mm.218515	NM_030116	ENSMUSG00000028140	Mrpl9	8030480E20Rik|AA409733|C330013D18Rik|L9mt	mitochondrial ribosomal protein L9	protein-coding	0.0	0.0	1.5	0.0	0.0	1.5
Merged-chr1-72428743-4	chr1	72428264	72429264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001045533, exon 4 of 4)	exon (NM_001045533, exon 4 of 4)	107800.0	NM_001045533	381270.0	Mm.337023	NM_001045533	ENSMUSG00000039372	March4	BC056494|mKIAA1399	membrane-associated ring finger (C3HC4) 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14231616-4	chr2	14231115	14232115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 1 of 29)	intron (NM_008625, intron 1 of 29)	2201.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-31149847-4	chr8	31149317	31150317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199988)	promoter-TSS (NM_001199988)	-499.0	NM_144927	234138.0	Mm.349800	NM_144927	ENSMUSG00000031577	Tti2	-	TELO2 interacting protein 2	protein-coding	187.5	572.0	539.0	246.0	423.0	366.5
Merged-chr7-84688812-2	chr7	84688312	84689312	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038175)	promoter-TSS (NR_038175)	-828.0	NR_038175	72495.0	Mm.382914	NR_038175	ENSMUSG00000085236	2610206C17Rik	-	RIKEN cDNA 2610206C17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31080831-4	chr6	31080317	31081317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17724.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-15637890-4	chr16	15637370	15638370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011159)	promoter-TSS (NM_011159)	4.0	NM_011159	19090.0	Mm.71	NM_011159	ENSMUSG00000022672	Prkdc	AI326420|AU019811|DNA-PKcs|DNAPDcs|DNAPK|DNPK1|DOXNPH|HYRC1|XRCC7|dxnph|p460|scid|slip	protein kinase, DNA activated, catalytic polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98896221-4	chr10	98895711	98896711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18431.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25680886-4	chr15	25680386	25681386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 2 of 40)	ORR1D2|LTR|ERVL-MaLR	58336.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108079318-4	chr9	108078819	108079819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_032543)	promoter-TSS (NM_032543)	-18.0	NM_001311152	84585.0	Mm.379272	NM_032543	ENSMUSG00000041528	Rnf123	BC003945|Kpc1	ring finger protein 123	protein-coding	0.0	4.0	1.5	0.0	11.0	1.0
Merged-chr17-34000366-4	chr17	33999863	34000863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347346)	promoter-TSS (NM_001347346)	-16.0	NM_001347346	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	260.5	758.0	452.0	110.0	275.5	214.0
Merged-chr12-3913045-4	chr12	3912551	3913551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001271753, exon 23 of 23)	3' UTR (NM_001271753, exon 23 of 23)	21307.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142821837-4	chr5	142821310	142822310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4423.0	NM_001122730	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54248494-4	chr6	54248000	54249000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 6 of 12)	L1MB5|LINE|L1	-16358.0	NM_001311133	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-33274661-4	chr5	33274186	33275186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198860, intron 1 of 9)	CpG	318.0	NM_001310535	13016.0	Mm.7286	NM_013502	ENSMUSG00000037373	Ctbp1	BARS|CtBP3/BARS|D4S115h|D5H4S115|D5H4S115E	C-terminal binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152714068-4	chr3	152713570	152714570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178016)	promoter-TSS (NM_178016)	-30.0	NM_178016	329777.0	Mm.331447	NM_025662	ENSMUSG00000039047	Pigk	3000001O05Rik|Gm38470|PIG-K	phosphatidylinositol glycan anchor biosynthesis, class K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124478547-4	chr6	124478042	124479042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13758.0	NM_153508	232370.0	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98350811-2	chr13	98350311	98351311	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3434.0	NM_008242	15229.0	Mm.347441	NM_008242	ENSMUSG00000078302	Foxd1	AI385632|BF-2|FREAC4|Hfh10|Hfhbf2	forkhead box D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122576762-4	chr10	122576274	122577274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6883.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	57.5	181.0	111.0	117.5	215.0	186.5
Merged-chr16-55974595-4	chr16	55974103	55975103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027965)	promoter-TSS (NR_027965)	14.0	NR_027965	66391.0	Mm.472722	NM_133677	ENSMUSG00000102101	Zbtb11os1	2310061J03Rik	zinc finger and BTB domain containing 11, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-59205301-4	chr3	59204793	59205793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	5589.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137345964-4	chr4	137345467	137346467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009861, intron 1 of 5)	ORR1D2|LTR|ERVL-MaLR	11792.0	NM_009861	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	6.0	41.5	19.0	2.5	20.0	9.0
Merged-chr16-64873969-4	chr16	64873476	64874476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21975.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-17345065-4	chr19	17344539	17345539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	-5534.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	50.5	166.0	108.5	29.0	62.5	45.5
Merged-chr11-101069997-4	chr11	101069516	101070516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013792)	promoter-TSS (NM_013792)	-78.0	NM_013792	27419.0	Mm.95452	NM_013792	ENSMUSG00000001751	Naglu	-	alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34991696-4	chr13	34991197	34992197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110331, intron 2 of 9)	MER77B|LTR|ERVL	2447.0	NM_011868	23986.0	Mm.491141	NM_011868	ENSMUSG00000021417	Eci2	Acbd2|Drs1|Hca88|Peci	enoyl-Coenzyme A delta isomerase 2	protein-coding	8.5	16.5	9.0	1.0	13.0	10.0
Merged-chr1-74375147-4	chr1	74374649	74375649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013612)	promoter-TSS (NM_013612)	-54.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-61490705-2	chr2	61490205	61491205	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87881.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120612686-1	chr5	120612186	120613186	+	1000.0	f0_c57.idr	promoter-TSS (NM_028041)	promoter-TSS (NM_028041)	-97.0	NM_133908	100764.0	Mm.9654	NM_029096	ENSMUSG00000029600	Rita1	1110008J03Rik|AI853657|C86297|Rita	RBPJ interacting and tubulin associated 1	protein-coding	13.0	67.5	74.0	17.5	31.5	46.5
Merged-chr10-80659295-2	chr10	80658795	80659795	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2224.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24597550-4	chr5	24597050	24598050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025891, intron 2 of 12)	intron (NM_025891, intron 2 of 12)	4452.0	NM_025891	66993.0	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122049950-2	chr5	122049450	122050450	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001312908)	promoter-TSS (NM_001312908)	-99.0	NM_001312908	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	0.5	10.0	10.0	0.0	4.0	4.0
Merged-chr9-44235012-4	chr9	44234500	44235500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007619)	promoter-TSS (NM_007619)	-954.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-6717749-4	chr10	6717275	6718275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-40818.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	19.5	31.0	25.0	19.5	29.0	24.5
Merged-chr8-115522704-4	chr8	115522206	115523206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	184188.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13160094-2	chr8	13159594	13160594	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010684, intron 1 of 8)	intron (NM_010684, intron 1 of 8)	933.0	NM_010684	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72183998-4	chr8	72183508	72184508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5660.0	NM_197944	209488.0	Mm.157431	NM_197944	ENSMUSG00000062007	Hsh2d	ALX|Hsh2	hematopoietic SH2 domain containing	protein-coding	9.5	29.0	16.0	9.0	47.5	25.5
Merged-chr1-165672693-4	chr1	165672186	165673186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	MLTR11B|LTR|ERVK	35408.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7165269-2	chr19	7164769	7165769	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134147, intron 3 of 10)	CpG	41015.0	NM_134150	107260.0	Mm.203921	NM_134150	ENSMUSG00000024767	Otub1	AI850305	OTU domain, ubiquitin aldehyde binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23135978-4	chr16	23135470	23136470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-8240.0	NM_145480	106344.0	Mm.386835	NM_145480	ENSMUSG00000022881	Rfc4	A1|AI894123|AU040575|RFC37	replication factor C (activator 1) 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112507017-4	chr13	112506526	112507526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010560)	TTS (NM_010560)	42956.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	12.0	21.0	13.5	5.5	5.5	13.0
Merged-chr10-96623403-4	chr10	96622916	96623916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007569)	TTS (NM_007569)	6415.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27923825-4	chr15	27923333	27924333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	102015.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139403345-2	chr5	139402845	139403845	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	-3042.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77773618-4	chr18	77773120	77774120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007505)	promoter-TSS (NM_007505)	1.0	NM_001357533	225745.0	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45923628-4	chr7	45923126	45924126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2200.0	NM_010129	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	17.5	38.0	31.5	20.0	69.0	27.0
Merged-chr8-3221177-4	chr8	3220688	3221688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330056, intron 2 of 21)	CpG	58429.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	3.0	8.5	8.5	0.0	2.0	1.5
Merged-chr18-36669588-2	chr18	36669088	36670088	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025291, intron 2 of 4)	intron (NM_025291, intron 2 of 4)	723.0	NM_001164406	24068.0	Mm.29058	NM_025291	ENSMUSG00000006050	Sra1	AA959952|Sra|Srap|Straa1|Strra1	steroid receptor RNA activator 1	protein-coding	12.5	20.0	15.0	12.5	19.5	13.5
Merged-chr1-40295036-4	chr1	40294537	40295537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001123382, intron 5 of 10)	intron (NM_001123382, intron 5 of 10)	28451.0	NM_001123382	16177.0	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98938236-4	chr11	98937719	98938719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009024, intron 1 of 8)	intron (NM_009024, intron 1 of 8)	501.0	NM_001177302	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71483959-3	chr17	71483458	71484458	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-8615.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	28.0	89.5	81.0	3.0	12.5	14.0
Merged-chr4-53155687-4	chr4	53155180	53156180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	4215.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-32528266-4	chr6	32527772	32528772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 1 of 31)	intron (NM_175750, intron 1 of 31)	17131.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173740321-2	chr1	173739820	173740820	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204910, intron 1 of 7)	B1_Mus1|SINE|Alu	1489.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	171.5	396.0	176.0	123.0	237.5	139.0
Merged-chr11-69664021-4	chr11	69663503	69664503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291058)	TTS (NM_001291058)	960.0	NR_035455	100316840.0		NR_035455	ENSMUSG00000088752	Mir1934	mir-1934|mmu-mir-1934	microRNA 1934	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133911086-4	chr4	133910578	133911578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-23281.0	NM_009097	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	181.5	446.0	302.0	172.0	388.0	284.5
Merged-chr1-34801715-4	chr1	34801205	34802205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183019)	promoter-TSS (NM_183019)	-17.0	NM_183019	226970.0	Mm.41604	NM_183019	ENSMUSG00000037509	Arhgef4	9330140K16Rik|Asef	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-194995395-4	chr1	194994902	194995902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18443.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120822362-2	chr6	120821877	120822877	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_007510, intron 1 of 8)	intron (NM_007510, intron 1 of 8)	321.0	NM_007510	11973.0	Mm.29045	NM_007510	ENSMUSG00000019210	Atp6v1e1	2410029D23Rik|Atp6e|Atp6e2|Atp6v1e|D6Ertd385e|Vma4|p31	ATPase, H+ transporting, lysosomal V1 subunit E1	protein-coding	40.5	72.5	90.0	60.0	105.5	79.5
Merged-chr18-24020857-4	chr18	24020391	24021391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021559)	promoter-TSS (NM_021559)	-78.0	NM_021559	59057.0	Mm.417427	NM_021559	ENSMUSG00000051469	Zfp24	3526401F17Rik|5033419P20Rik|AI480505|AI642085|AL024422|KOX17|ZF-12|Zfp191|Znf24	zinc finger protein 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75703965-4	chr2	75703516	75704516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132727, intron 1 of 1)	CpG	647.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	78.0	244.5	191.0	76.0	232.5	157.0
Merged-chr13-54686004-2	chr13	54685504	54686504	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027396, intron 1 of 10)	MIRb|SINE|MIR	1804.0	NM_001146025	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157079289-4	chr2	157078782	157079782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164663)	promoter-TSS (NM_001164663)	-17.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-32165761-5	chr14	32165294	32166294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019744)	promoter-TSS (NM_019744)	5.0	NM_019744	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121815182-5	chr3	121814700	121815700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355756)	promoter-TSS (NM_001355756)	102.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-133661415-4	chr1	133660861	133661861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166552)	promoter-TSS (NM_001166552)	38.0	NM_144530	70579.0	Mm.245357	NM_144530	ENSMUSG00000102976	Zc3h11a	1110003F06Rik|5730454B08Rik|G630041M05Rik|Zc3hdc11a|Zc3hh11a|mKIAA0663	zinc finger CCCH type containing 11A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95162477-4	chr4	95161980	95162980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110258.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109202167-4	chr4	109201652	109202652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133885, exon 1 of 23)	exon (NM_133885, exon 1 of 23)	120.0	NM_133885	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	83.0	144.5	111.5	77.0	195.5	132.5
Merged-chr18-62977862-4	chr18	62977414	62978414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028017)	promoter-TSS (NM_028017)	-2.0	NM_028017	108123.0	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95372102-4	chr10	95371609	95372609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35833.0	NR_045337	69629.0	Mm.250542	NR_045337	ENSMUSG00000100550	2310039L15Rik	A53T-syn|G2-3|PrPsynA53T|Tg(Prnp-SNCA*A53T)23Mkle	RIKEN cDNA 2310039L15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-51907891-4	chr1	51907390	51908390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010863, intron 1 of 29)	intron (NM_010863, intron 1 of 29)	8088.0	NM_001161817	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91706262-4	chr6	91705764	91706764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	22197.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-96162625-4	chr5	96162111	96163111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178854)	promoter-TSS (NM_178854)	-621.0	NM_144910	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	7.0	12.0	9.0	4.0	13.5	12.0
Merged-chr1-16665244-4	chr1	16664751	16665751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026392)	promoter-TSS (NM_026392)	60.0	NM_026392	70397.0	Mm.194225	NM_026392	ENSMUSG00000025940	Tmem70	1110020A09Rik|2210416J16Rik	transmembrane protein 70	protein-coding	70.5	108.5	91.5	57.5	88.0	60.0
Merged-chr16-23279970-4	chr16	23279476	23280476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-10494.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44134189-2	chr9	44133689	44134689	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023061)	promoter-TSS (NM_023061)	296.0	NR_152189	100038560.0	Mm.429758	NR_152189		Gm10687	-	predicted gene 10687	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13649348-4	chr8	13648860	13649860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	L1M4|LINE|L1	28227.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	15.0	32.5	20.0	15.0	43.5	14.5
Merged-chr6-58831614-5	chr6	58831092	58832092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001361967, exon 1 of 23)	5' UTR (NM_001361967, exon 1 of 23)	127.0	NM_001361966	73998.0	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160646518-5	chr2	160646116	160647116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009408, exon 2 of 21)	exon (NM_009408, exon 2 of 21)	719.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14891472-4	chr8	14890978	14891978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012000, intron 1 of 2)	intron (NM_012000, intron 1 of 2)	2942.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97684826-4	chr11	97684313	97685313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_139311, exon 20 of 20)	3' UTR (NM_139311, exon 20 of 20)	-1139.0	NM_001085500	217149.0	Mm.29659	NM_001085500	ENSMUSG00000078695	Cisd3	Mel-13|Mel13	CDGSH iron sulfur domain 3	protein-coding	25.0	27.0	22.5	12.0	33.0	17.5
Merged-chr2-132169367-4	chr2	132168888	132169888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-24068.0	NM_001355430	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113341734-4	chr6	113341252	113342252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133926, intron 2 of 11)	intron (NM_133926, intron 2 of 11)	2170.0	NM_133926	52163.0	Mm.277373	NM_133926	ENSMUSG00000030272	Camk1	AI505105|CaMKIalpha|D6Ertd263e	calcium/calmodulin-dependent protein kinase I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-10331302-4	chr3	10330802	10331802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001010834)	TTS (NM_001010834)	137.0	NM_001310433	55980.0	Mm.183042	NM_018864	ENSMUSG00000027531	Impa1	2610002K09Rik|2900059K10Rik|AI325909	inositol (myo)-1(or 4)-monophosphatase 1	protein-coding	28.5	24.0	41.0	9.5	60.5	28.0
Merged-chr5-8893725-4	chr5	8893241	8894241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008830)	promoter-TSS (NM_008830)	20.0	NM_008830	18670.0	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-37246868-4	chr17	37246361	37247361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14493.0	NM_146512	258505.0	Mm.353371	NM_146512	ENSMUSG00000058802	Olfr97	MOR156-2	olfactory receptor 97	protein-coding	1.5	5.0	10.5	0.0	8.0	2.5
Merged-chr7-13034787-4	chr7	13034319	13035319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026885)	promoter-TSS (NM_026885)	-42.0	NM_001360731	68953.0	Mm.295670	NM_026885	ENSMUSG00000033916	Chmp2a	1500016L11Rik|mVps2	charged multivesicular body protein 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30888998-4	chr5	30888497	30889497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001294262)	promoter-TSS (NM_001294262)	-9.0	NM_001048192	231093.0	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-53759769-4	chr6	53759273	53760273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Eulor8|DNA|TcMar?	61052.0	NM_025817	66873.0	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	6.5	0.0	3.5	3.5	5.0	1.5
Merged-chr5-43782196-7	chr5	43781709	43782709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159963)	promoter-TSS (NM_001159963)	-60.0	NM_178729	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	9.5	11.5	10.0	7.0	8.5	8.0
Merged-chr7-143020372-2	chr7	143019872	143020872	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001128080)	TTS (NM_001128080)	14713.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	17.0	34.5	13.5	14.5	24.5	13.5
Merged-chr18-53178213-2	chr18	53177713	53178713	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357463, intron 1 of 15)	intron (NM_001357463, intron 1 of 15)	1921.0	NM_026386	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51884873-5	chr14	51884442	51885442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029990)	promoter-TSS (NM_001029990)	100.0	NM_001029990	52535.0	Mm.5750	NM_001029990	ENSMUSG00000004561	Mettl17	2310032K15Rik|D14Ertd209e|Mett11d1	methyltransferase like 17	protein-coding	12.5	47.0	76.0	54.0	106.5	69.5
Merged-chr7-19748566-2	chr7	19748066	19749066	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008990, intron 1 of 8)	intron (NM_008990, intron 1 of 8)	1007.0	NM_008990	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53246625-4	chr18	53246112	53247112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	950.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	40.0	115.5	67.5	61.5	115.5	72.0
Merged-chr11-77973973-2	chr11	77973473	77974473	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001291225, exon 8 of 16)	exon (NM_001291225, exon 8 of 16)	-8843.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-85970070-4	chr10	85969565	85970565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177772, intron 12 of 15)	intron (NM_177772, intron 12 of 15)	-12272.0	NM_145422	28088.0	Mm.9257	NM_145422	ENSMUSG00000001783	Rtcb	AI255213|AI463255|D10Wsu52e|FAAP|HSPC117	RNA 2',3'-cyclic phosphate and 5'-OH ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35026146-4	chr12	35025649	35026649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21040.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	10.5	23.5	28.0	3.0	15.5	13.5
Merged-chr14-29978459-4	chr14	29978024	29979024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027493, exon 1 of 13)	exon (NM_027493, exon 1 of 13)	187.0	NM_027493	56249.0	Mm.215110	NM_027493	ENSMUSG00000015971	Actr8	5730542K05Rik|ARP8	ARP8 actin-related protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-49276217-4	chr2	49275710	49276710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290656, intron 6 of 9)	intron (NM_001290656, intron 6 of 9)	30310.0	NM_001290656	109241.0	Mm.440436	NM_029924	ENSMUSG00000036792	Mbd5	9430004D19Rik|AA536666|AI426407|C030040A15Rik|Gm1630	methyl-CpG binding domain protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180771934-4	chr1	180771447	180772447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41658.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8880921-4	chr19	8880425	8881425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160356)	promoter-TSS (NM_001160356)	8.0	NM_001160356	107197.0	Mm.381181	NM_001160356	ENSMUSG00000071654	Uqcc3	AI462493|Cbp4	ubiquinol-cytochrome c reductase complex assembly factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117282326-4	chr8	117281837	117282837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	25318.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-22076149-4	chr3	22075671	22076671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030732)	promoter-TSS (NM_030732)	-481.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20733673-4	chr14	20733172	20734172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010811, intron 1 of 14)	intron (NM_010811, intron 1 of 14)	890.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	18.5	44.0	25.5	8.5	20.5	35.5
Merged-chr3-159839638-4	chr3	159839097	159840097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026582)	promoter-TSS (NM_026582)	-53.0	NM_026582	68151.0	Mm.6766	NM_026582	ENSMUSG00000028173	Wls	5031439A09Rik|AI173978|AI987742|EVI|Gpr177	wntless WNT ligand secretion mediator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29492080-4	chr7	29491577	29492577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081028, intron 2 of 22)	L1MC4|LINE|L1	13383.0	NM_001081028	74206.0	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	3.0	7.0	4.0	0.0	4.0	2.5
Merged-chr12-25648850-4	chr12	25648343	25649343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	519669.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	4.5	11.0	4.0	0.0	3.5	6.0
Merged-chr15-81026976-2	chr15	81026476	81027476	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 3 of 13)	intron (NM_001082536, intron 3 of 13)	49211.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr18-36715945-4	chr18	36715436	36716436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	10879.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100443907-4	chr7	100443343	100444343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 27 of 32)	intron (NM_001017985, intron 27 of 32)	-29148.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-22071714-2	chr6	22071214	22072214	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081351, intron 4 of 21)	intron (NM_001081351, intron 4 of 21)	85804.0	NM_001081351	214642.0	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16925010-2	chr7	16924510	16925510	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007590)	promoter-TSS (NM_007590)	-978.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	4.5	16.0	19.0	8.0	41.0	14.5
Merged-chr3-90266503-4	chr3	90265993	90266993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201407)	promoter-TSS (NM_201407)	-21.0	NM_201407	229541.0	Mm.30571	NM_201407	ENSMUSG00000042404	Dennd4b	-	DENN/MADD domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171272188-4	chr1	171271611	171272611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020579, intron 3 of 7)	intron (NM_020579, intron 3 of 7)	1783.0	NM_020579	57370.0	Mm.274011	NM_020579	ENSMUSG00000052423	B4galt3	9530061M23Rik|AA104562|AW125175|ESTM26|ESTM6|R74981	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	protein-coding	40.0	69.0	49.5	24.5	59.5	52.0
Merged-chr2-28468032-4	chr2	28467523	28468523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166031)	promoter-TSS (NM_001166031)	-43.0	NM_080452	118451.0	Mm.294951	NM_080452	ENSMUSG00000035772	Mrps2	1500019M10Rik	mitochondrial ribosomal protein S2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32395809-4	chr18	32395314	32396314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 1 of 17)	MTD|LTR|ERVL-MaLR	-17530.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149407631-4	chr4	149407126	149408126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022022, intron 1 of 26)	intron (NM_022022, intron 1 of 26)	19005.0	NM_022022	63958.0	Mm.415260	NM_022022	ENSMUSG00000028960	Ube4b	4930551I19Rik|4933406G05Rik|AU014668|D4Bwg0973e|UFD2|UFD2a|Ufd2p|mKIAA0684	ubiquitination factor E4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57031856-7	chr17	57031325	57032325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010613)	promoter-TSS (NM_010613)	-318.0	NM_010613	16549.0	Mm.34296	NM_010613	ENSMUSG00000007670	Khsrp	6330409F21Rik|Fbp2|Fubp2|Ksrp	KH-type splicing regulatory protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-18194875-4	chr10	18194368	18195368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195036, intron 3 of 20)	intron (NM_001195036, intron 3 of 20)	16022.0	NM_001195036	100045792.0	Mm.380617	NM_001195036	ENSMUSG00000071392	Ect2l	C330021H03Rik|Gm10331	epithelial cell transforming sequence 2 oncogene-like	protein-coding	4.5	11.5	4.0	17.0	18.5	13.5
Merged-chr14-76097425-4	chr14	76096934	76097934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026177, intron 6 of 7)	intron (NM_026177, intron 6 of 7)	13381.0	NM_026177	67467.0	Mm.260767	NM_026177	ENSMUSG00000022008	Gpalpp1	1200011I18Rik|Kiaa1704	GPALPP motifs containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80154920-4	chr7	80154390	80155390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-31951.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	20.0	18.5	18.0	10.0	35.0	15.5
Merged-chr11-8661952-2	chr11	8661452	8662452	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	2583.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	9.0	31.5	32.0	23.0	26.0	33.5
Merged-chr8-70753312-4	chr8	70752803	70753803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1376.0	NM_001328047	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	63.5	161.0	104.0	64.0	164.5	150.5
Merged-chr5-64344487-4	chr5	64343993	64344993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 17 of 18)	intron (NM_001289514, intron 17 of 18)	114136.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	95.0	295.5	176.0	38.5	59.5	63.5
Merged-chr7-101549426-4	chr7	101548938	101549938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	6364.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	127.0	380.5	189.5	101.0	244.0	157.0
Merged-chr7-139984676-3	chr7	139984188	139985188	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007403, intron 19 of 23)	intron (NM_007403, intron 19 of 23)	2186.0	NR_106029	102465643.0		NR_106029	ENSMUSG00000099092	Mir7062	Gm27339|mmu-mir-7062	microRNA 7062	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-31111717-4	chr8	31111250	31112250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175136)	promoter-TSS (NM_175136)	-96.0	NM_175136	68867.0	Mm.29532	NM_175136	ENSMUSG00000039328	Rnf122	1110063C11Rik	ring finger protein 122	protein-coding	40.0	84.0	78.0	63.5	82.0	76.5
Merged-chr1-107502259-4	chr1	107501772	107502772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9151.0	NM_001174170	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68855161-2	chr11	68854661	68855661	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2030.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102417880-4	chr12	102417368	102418368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 2 of 13)	intron (NM_011175, intron 2 of 13)	21945.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	17.0	66.5	63.5	17.5	66.0	63.5
Merged-chr5-118376152-2	chr5	118375652	118376652	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	130925.0	NM_001081236	76792.0	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-75293467-4	chr3	75292975	75293975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23397.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-50687943-4	chr2	50687426	50688426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-221758.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24975151-4	chr2	24974638	24975638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146251)	promoter-TSS (NM_146251)	-40.0	NM_001031808	107733.0	Mm.23010	NM_001031808	ENSMUSG00000036850	Mrpl41	MRP-L27|Rpml27	mitochondrial ribosomal protein L41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191817999-4	chr1	191817500	191818500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3473.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40847478-6	chr4	40846990	40847990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	2648.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114982086-3	chr11	114981606	114982606	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145437)	TTS (NM_145437)	7780.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	11.0	21.5	24.0	49.5	197.0	166.5
Merged-chr14-121366391-4	chr14	121365869	121366869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145465, intron 1 of 10)	intron (NM_145465, intron 1 of 10)	12861.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27336100-4	chr7	27335601	27336601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175641, intron 1 of 32)	intron (NM_175641, intron 1 of 32)	1511.0	NM_175641	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0.0	0.0	3.0	0.0	0.0	0.0
Merged-chr4-150064436-4	chr4	150063927	150064927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-4027.0	NR_029751	723848.0		NR_029751	ENSMUSG00000065493	Mir34a	Mirn34a|mir-34a|mmu-mir-34a	microRNA 34a	ncRNA	18.5	8.5	7.0	8.5	18.0	7.5
Merged-chr5-143909902-4	chr5	143909422	143910422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008886)	promoter-TSS (NM_008886)	-79.0	NM_008886	18861.0	Mm.2950	NM_008886	ENSMUSG00000075569	Pms2	AW555130|Pmsl2	PMS1 homolog2, mismatch repair system component	protein-coding	35.5	59.5	46.0	18.5	46.5	47.5
Merged-chr17-34592164-4	chr17	34591647	34592647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017463)	promoter-TSS (NM_017463)	-324.0	NM_017463	18515.0	Mm.390957	NM_017463	ENSMUSG00000034673	Pbx2	AU043397|G17	pre B cell leukemia homeobox 2	protein-coding	1.5	8.0	1.5	1.5	3.5	1.0
Merged-chr15-81522261-4	chr15	81521763	81522763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55947.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120324448-4	chr14	120323949	120324949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 1 of 8)	(TCC)n|Simple_repeat|Simple_repeat	17997.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-72070430-4	chr12	72069931	72070931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_181752, exon 1 of 1)	exon (NM_181752, exon 1 of 1)	560.0	NM_181752	238252.0	Mm.390508	NM_181752	ENSMUSG00000043398	Gpr135	PAFR	G protein-coupled receptor 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86438614-5	chr6	86438096	86439096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243741)	promoter-TSS (NM_001243741)	-50.0	NM_001243742	232196.0	Mm.404040	NM_146170	ENSMUSG00000046679	C87436	-	expressed sequence C87436	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34828098-4	chr1	34827603	34828603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160235, intron 3 of 7)	intron (NM_001160235, intron 3 of 7)	14947.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55532593-4	chr4	55532081	55533081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010637)	promoter-TSS (NM_010637)	-106.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-74305912-4	chr4	74305399	74306399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356561, intron 4 of 20)	URR1B|DNA|hAT-Charlie	54020.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-177442067-4	chr1	177441574	177442574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355101)	promoter-TSS (NM_001355101)	-277.0	NM_001355099	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100110691-2	chr12	100110191	100111191	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-1640.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44003844-4	chr10	44003360	44004360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172393, exon 1 of 20)	exon (NM_172393, exon 1 of 20)	986.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-42419649-4	chr6	42419155	42420155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14126.0	NM_199159	387512.0	Mm.377919	NM_199159	ENSMUSG00000056203	Tas2r135	Tas2r35|mt2r38	taste receptor, type 2, member 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8641078-4	chr12	8640618	8641618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-33016.0	NM_001160221	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60881082-9	chr2	60880549	60881549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	CpG	389.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47295401-4	chr17	47294900	47295900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 5 of 19)	intron (NM_001097623, intron 5 of 19)	65170.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	10.0	25.0	33.5	11.0	26.5	18.5
Merged-chr6-33867054-4	chr6	33866543	33867543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 14 of 17)	intron (NM_009148, intron 14 of 17)	-162405.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-64489089-4	chr18	64488598	64489598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348055)	promoter-TSS (NM_001348055)	0.0	NM_007998	14151.0	Mm.1070	NM_007998	ENSMUSG00000024588	Fech	AI894116|Fcl|fch	ferrochelatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26138678-4	chr17	26138213	26139213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009733)	promoter-TSS (NM_009733)	27.0	NM_001159598	12005.0	Mm.23684	NM_009733	ENSMUSG00000024182	Axin1	AI316800|Axin|Fu|Kb|Ki|fused|kinky|knobbly	axin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12256028-4	chr13	12255529	12256529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081128, intron 1 of 32)	intron (NM_001081128, intron 1 of 32)	2084.0	NM_001081128	238505.0	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111156470-2	chr8	111155970	111156970	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10972.0	NR_040364	434350.0	Mm.442061	NR_040363		9430091E24Rik	-	RIKEN cDNA 9430091E24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-43586552-2	chr11	43586052	43587052	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001045530, exon 6 of 6)	3' UTR (NM_001045530, exon 6 of 6)	15010.0	NM_008375	16204.0	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78348115-4	chr11	78347605	78348605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011676, exon 4 of 5)	exon (NM_011676, exon 4 of 5)	1395.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19683897-4	chr7	19683393	19684393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	-2433.0	NM_001309799	105886299.0	Mm.28394	NM_001309799	ENSMUSG00000109350	Gm44805	Apoc4-apoc2	predicted gene 44805	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45011338-2	chr7	45010838	45011838	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008422, intron 6 of 10)	B1_Mus1|SINE|Alu	1149.0	NR_106021	102466218.0		NR_106021	ENSMUSG00000098839	Mir7054	Gm27557|mmu-mir-7054	microRNA 7054	ncRNA	0.0	3.5	9.0	3.5	1.0	11.0
Merged-chr5-30036123-4	chr5	30035603	30036603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	22989.0	NM_031168	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95417613-2	chr10	95417113	95418113	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007706)	promoter-TSS (NM_007706)	238.0	NR_045338	70523.0	Mm.158398	NR_045338	ENSMUSG00000097766	5730420D15Rik	-	RIKEN cDNA 5730420D15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-16244056-4	chr14	16243547	16244547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359883)	promoter-TSS (NM_001359883)	-716.0	NM_001359883	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	324.0	724.0	500.0	356.0	691.0	466.0
Merged-chr16-35871438-4	chr16	35870905	35871905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039530)	promoter-TSS (NM_001039530)	-23.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-4771639-4	chr13	4771125	4772125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-162461.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	47.0	109.0	78.0	48.0	86.5	68.0
Merged-chr7-106693145-4	chr7	106692633	106693633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3404.0	NM_146452	258444.0	Mm.271372	NM_146452	ENSMUSG00000064223	Olfr694	MOR283-9	olfactory receptor 694	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-74393128-3	chr18	74392630	74393630	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49489.0	NM_201600	17919.0	Mm.260098	NM_008661	ENSMUSG00000025885	Myo5b	AI661750|mKIAA1119	myosin VB	protein-coding	0.0	3.0	3.0	1.0	1.5	2.5
Merged-chr3-95871482-4	chr3	95870923	95871923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040446)	promoter-TSS (NR_040446)	91.0	NM_078479	66292.0	Mm.24108	NM_078479	ENSMUSG00000054312	Mrps21	1810031B19Rik|S21mt	mitochondrial ribosomal protein S21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-16978493-4	chr11	16977976	16978976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 9 of 9)	intron (NM_019549, intron 9 of 9)	27066.0	NM_176982	319701.0	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65547227-2	chr9	65546690	65547690	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	32897.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	67.5	106.0	71.5	35.5	77.0	59.5
Merged-chr7-19303331-6	chr7	19302823	19303823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008036, exon 4 of 4)	3' UTR (NM_008036, exon 4 of 4)	6722.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-109703697-4	chr7	109703189	109704189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020616)	promoter-TSS (NM_020616)	-48.0	NM_020616	57373.0	Mm.334138	NM_020616	ENSMUSG00000031023	Akip1	BCA3|C11orf17|D7H11orf17|D930014E17Rik|ICRFP703B1614Q5.6|ORF27	A kinase (PRKA) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-90089623-4	chr13	90089120	90090120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025335)	promoter-TSS (NM_025335)	-12.0	NM_028012	108138.0	Mm.37531	NM_028012	ENSMUSG00000021615	Xrcc4	2310057B22Rik|AW413319|AW545101	X-ray repair complementing defective repair in Chinese hamster cells 4	protein-coding	37.5	47.5	37.5	16.0	50.0	51.0
Merged-chr5-65486029-4	chr5	65485577	65486577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133697, intron 1 of 4)	intron (NM_133697, intron 1 of 4)	6758.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-62463743-2	chr7	62463243	62464243	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013788, exon 1 of 1)	exon (NM_013788, exon 1 of 1)	767.0	NM_013788	27412.0	Mm.422745	NM_013788	ENSMUSG00000070526	Peg12	Frat3	paternally expressed 12	protein-coding	3.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73029928-4	chr2	73029434	73030434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-49488.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27133898-4	chr17	27133392	27134392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026063)	promoter-TSS (NM_026063)	-1.0	NM_026063	67267.0	Mm.272389	NM_026063	ENSMUSG00000024208	Uqcc2	2900010M23Rik|Cbp6|M19|Mnf1	ubiquinol-cytochrome c reductase complex assembly factor 2	protein-coding	27.5	47.0	37.5	11.5	36.0	24.0
Merged-chr15-89373600-4	chr15	89373043	89374043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001271601)	TTS (NM_001271601)	275.0	NM_001111288	100126824.0	Mm.287977	NM_001111288	ENSMUSG00000091780	Sco2	-	SCO2 cytochrome c oxidase assembly protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-158961216-2	chr3	158960716	158961716	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115148.0	NR_040750	624759.0	Mm.491054	NR_040750	ENSMUSG00000106053	Gm20752	-	predicted gene, 20752	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172482105-4	chr1	172481602	172482602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145800)	promoter-TSS (NM_001145800)	-111.0	NM_001145800	93842.0	Mm.214530	NM_033608	ENSMUSG00000037995	Igsf9	644ETD8|Dasm1|Kiaa1355-hp|NRT1|Ncaml|mKIAA1355	immunoglobulin superfamily, member 9	protein-coding	0.0	2.0	2.0	3.0	0.0	2.5
Merged-chr7-121072612-4	chr7	121072110	121073110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030691, intron 1 of 5)	intron (NM_030691, intron 1 of 5)	1920.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-59042442-2	chr19	59041942	59042942	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 3 of 16)	B4|SINE|B4	33627.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-121147054-4	chr6	121146553	121147553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16031.0	NM_001270475	194401.0	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	0.0	0.0	0.0	1.5	2.0	1.5
Merged-chr2-164497465-4	chr2	164496986	164497986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133779)	promoter-TSS (NM_133779)	-39.0	NM_133779	78928.0	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78442751-2	chr9	78442251	78443251	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_173386, exon 1 of 5)	exon (NM_173386, exon 1 of 5)	486.0	NR_125721	214763.0	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66147538-4	chr5	66147035	66148035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	B3A|SINE|B2	3443.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	26.5	65.0	41.0	13.5	47.0	14.5
Merged-chr6-87806234-4	chr6	87805735	87806735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104478, intron 1 of 2)	intron (NR_104478, intron 1 of 2)	3522.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82354358-4	chr15	82353848	82354848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025987)	promoter-TSS (NM_025987)	-57.0	NM_025987	67130.0	Mm.27570	NM_025987	ENSMUSG00000022450	Ndufa6	14kDa|2700038D15Rik|B230217P19Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79966906-4	chr2	79966424	79967424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	-58525.0	NM_001009978	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139273533-4	chr7	139273025	139274025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25043.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100116169-4	chr12	100115658	100116658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008947, intron 5 of 9)	intron (NM_008947, intron 5 of 9)	3827.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78373399-4	chr17	78372912	78373912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 16 of 16)	intron (NM_015800, intron 16 of 16)	44740.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96393321-4	chr9	96392830	96393830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-28899.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	18.5	56.0	40.5	18.0	54.0	38.0
Merged-chr13-44731816-2	chr13	44731316	44732316	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001205044, exon 2 of 19)	5' UTR (NM_001205044, exon 2 of 19)	545.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-96148828-2	chr16	96148328	96149328	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207301, intron 1 of 4)	intron (NM_207301, intron 1 of 4)	3409.0	NM_207301	71446.0	Mm.255063	NM_207301	ENSMUSG00000023147	Wrb	5530402J05Rik|C030018G21Rik|Chd5	tryptophan rich basic protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113508501-4	chr13	113508020	113509020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-5676.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-13691871-4	chr6	13691387	13692387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13921.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	9.0	28.0	33.0	12.5	20.5	32.5
Merged-chr5-125348246-4	chr5	125347753	125348753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7159.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	11.0	67.5	43.0	47.5	130.0	88.5
Merged-chr4-129461477-4	chr4	129460971	129461971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133889)	promoter-TSS (NM_133889)	-208.0	NM_133889	100383.0	Mm.17918	NM_133889	ENSMUSG00000040859	Bsdc1	1110063F24Rik|AW011758	BSD domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-63422110-4	chr17	63421602	63422602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 4 of 8)	intron (NM_015794, intron 4 of 8)	78478.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88743564-4	chr15	88743051	88744051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-8160.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16310200-4	chr7	16309705	16310705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133234, intron 1 of 3)	CpG	622.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-72836501-4	chr17	72835974	72836974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027166)	promoter-TSS (NM_027166)	-154.0	NM_027166	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	46.0	165.0	155.0	34.5	247.0	130.5
Merged-chr7-25606681-2	chr7	25606181	25607181	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9211.0	NM_001039243	632778.0	Mm.423112	NM_001039243	ENSMUSG00000074261	Erich4	EG632778|Gm7092|Kseg1	glutamate rich 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4135227-4	chr11	4134753	4135753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027859)	promoter-TSS (NM_027859)	93.0	NM_027859	71673.0	Mm.240586	NM_027859	ENSMUSG00000003581	Rnf215	0610009J22Rik|AW557025|C77903	ring finger protein 215	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94544773-5	chr16	94544291	94545291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18162.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69923006-1	chr8	69922506	69923506	+	1000.0	f1_c57bl6.idr	intron (NM_001286450, intron 3 of 12)	intron (NM_001286450, intron 3 of 12)	-20448.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	9.0	23.0	13.5	3.0	12.0	13.5
Merged-chr17-71206259-4	chr17	71205753	71206753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164885, intron 1 of 19)	intron (NM_001164885, intron 1 of 19)	1599.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	6.0	10.5	19.5	5.5	8.0	2.5
Merged-chr13-112363349-4	chr13	112362824	112363824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168403, intron 8 of 11)	intron (NM_001168403, intron 8 of 11)	74806.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	4.5	5.0	5.5	19.5	18.5	3.5
Merged-chr13-100848870-4	chr13	100848358	100849358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15431.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-73746700-4	chr18	73746187	73747187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053255, intron 2 of 3)	intron (NM_053255, intron 2 of 3)	7792.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21402652-4	chr13	21402152	21403152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145778, intron 1 of 5)	CpG	103.0	NM_001145778	72739.0	Mm.296071	NM_023685	ENSMUSG00000021327	Zkscan3	2810435N07Rik|AA408594|AI132359|Skz1|Zf47|Zfp-47|Zfp306|Zfp307|mszf35	zinc finger with KRAB and SCAN domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26911340-1	chr2	26910840	26911840	+	1000.0	f0_balb.idr	promoter-TSS (NM_011513)	promoter-TSS (NM_011513)	533.0	NM_013721	27176.0	Mm.328601	NM_013721	ENSMUSG00000062647	Rpl7a	Surf3	ribosomal protein L7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52630394-4	chr3	52629873	52630873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109351.0	NR_038079	329639.0	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-92837380-4	chr7	92836861	92837861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029494)	TTS (NM_029494)	36886.0	NM_001355126	74041.0	Mm.26468	NM_028729	ENSMUSG00000030641	Ddias	4632434I11Rik|noxin	DNA damage-induced apoptosis suppressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31061382-2	chr2	31060882	31061882	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	35118.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32284767-4	chr17	32284292	32285292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198094)	promoter-TSS (NM_198094)	-659.0	NM_020508	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52822382-4	chr13	52821907	52822907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65202.0	NR_027893	105404.0	Mm.184173	NR_027893		BB123696	-	expressed sequence BB123696	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113437765-4	chr13	113437241	113438241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65103.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121369044-4	chr10	121368527	121369527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 1 of 13)	intron (NM_029364, intron 1 of 13)	3937.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	2.5	23.0	5.0	0.5	15.0	7.5
Merged-chr8-69750059-4	chr8	69749539	69750539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001200023)	promoter-TSS (NM_001200023)	-77.0	NM_001200023	620419.0	Mm.460423	NM_001200023	ENSMUSG00000092260	Zfp963	-	zinc finger protein 963	protein-coding	54.0	71.0	102.0	39.0	52.5	45.0
Merged-chr9-14348447-2	chr9	14347947	14348947	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32795.0	NM_028013	71946.0	Mm.41423	NM_028013	ENSMUSG00000037419	Endod1	2210414F18Rik|2310067E08Rik|C85344	endonuclease domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117054913-2	chr8	117054413	117055413	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029686, exon 14 of 43)	exon (NM_029686, exon 14 of 43)	27536.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5824868-4	chr2	5824363	5825363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356504, intron 3 of 6)	intron (NM_001356504, intron 3 of 6)	-20171.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112612850-2	chr12	112612350	112613350	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198411, intron 22 of 22)	intron (NM_198411, intron 22 of 22)	-7197.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99471427-1	chr7	99470927	99471927	+	1000.0	f1_c57bl6.idr	intron (NM_028145, intron 4 of 6)	intron (NM_028145, intron 4 of 6)	5423.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55866050-4	chr19	55865533	55866533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-29288.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122633496-4	chr6	122632975	122633975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	7051.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	65.5	176.5	101.0	61.0	134.0	105.5
Merged-chr1-162622113-3	chr1	162621604	162622604	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17046.0	NM_010865	17926.0	Mm.10694	NM_010865	ENSMUSG00000026697	Myoc	AI957332|GLC1A|TIGR	myocilin	protein-coding	7.5	1.0	3.5	25.5	57.5	36.0
Merged-chr7-83655410-4	chr7	83654873	83655873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001360087, exon 13 of 19)	exon (NM_001360087, exon 13 of 19)	122.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59520116-2	chr11	59519616	59520616	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-13476.0	NM_172941	268417.0	Mm.239793	NM_172941	ENSMUSG00000020472	Zkscan17	Nizp1|Zfp496|Znf496	zinc finger with KRAB and SCAN domains 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66845682-4	chr14	66845177	66846177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009955, intron 3 of 13)	intron (NM_009955, intron 3 of 13)	22923.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	44.5	80.5	50.0	18.0	23.0	22.0
Merged-chr10-111365256-4	chr10	111364744	111365744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66565.0	NM_027914	71769.0	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29802642-4	chr2	29802153	29803153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011989)	promoter-TSS (NM_011989)	-27.0	NM_011989	26569.0	Mm.330113	NM_011989	ENSMUSG00000059316	Slc27a4	BB144259|FATP4	solute carrier family 27 (fatty acid transporter), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53030695-2	chr4	53030195	53031195	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013454)	TTS (NM_013454)	18815.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21794347-4	chr16	21793825	21794825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037957)	promoter-TSS (NR_037957)	-22.0	NR_037958	100043489.0	Mm.326535	NR_037957	ENSMUSG00000097290	1300002E11Rik	1500026P21Rik	RIKEN cDNA 1300002E11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120916901-4	chr6	120916379	120917379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007544)	promoter-TSS (NM_007544)	-55.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	66.5	138.5	104.5	25.0	107.5	56.0
Merged-chr1-39602637-4	chr1	39602134	39603134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25287.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81339336-2	chr7	81338836	81339836	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5898.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152104882-4	chr2	152104394	152105394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029688)	promoter-TSS (NM_029688)	-630.0	NM_029688	76650.0	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112895166-4	chr12	112894668	112895668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25373.0	NR_105906	102465567.0		NR_105906	ENSMUSG00000098338	Mir6941	Gm27923|mmu-mir-6941	microRNA 6941	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47090328-3	chr19	47089833	47090833	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011053)	promoter-TSS (NM_011053)	292.0	NM_023211	66477.0	Mm.29722	NM_023211	ENSMUSG00000071528	Usmg5	2010301L15Rik	upregulated during skeletal muscle growth 5	protein-coding	25.5	69.5	90.0	31.0	87.5	69.0
Merged-chr5-125180163-4	chr5	125179640	125180640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253904)	promoter-TSS (NM_001253904)	-926.0	NM_001253904	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	12.0	18.5	9.0	7.0	24.5	17.0
Merged-chr8-111234637-4	chr8	111234123	111235123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 1 of 25)	intron (NM_009149, intron 1 of 25)	24579.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-57881929-2	chr18	57881429	57882429	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009194, intron 1 of 26)	intron (NM_009194, intron 1 of 26)	3251.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	0.0	0.0	0.0	2.5	2.5	0.0
Merged-chr2-34751241-2	chr2	34750741	34751741	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151469, intron 2 of 26)	B1F1|SINE|Alu	3991.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132962822-4	chr4	132962305	132963305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11290.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	34.0	81.0	38.0	33.5	79.0	33.0
Merged-chr4-84079824-3	chr4	84079329	84080329	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34950.0	NR_130998	78238.0	Mm.243903	NR_130998	ENSMUSG00000085217	6030471H07Rik	-	RIKEN cDNA 6030471H07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120321972-4	chr8	120321477	120322477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93747.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47178019-4	chr14	47177509	47178509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008102, intron 1 of 5)	intron (NM_008102, intron 1 of 5)	11404.0	NM_008102	14528.0	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTP-CH-I|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	3.5	22.0	20.0	7.5	22.5	28.0
Merged-chr12-108914212-3	chr12	108913739	108914739	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	19967.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106270067-4	chr9	106269575	106270575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10986.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	3.5	6.0	3.5	8.0	5.5	0.5
Merged-chr18-82856608-4	chr18	82856117	82857117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_125720, exon 2 of 3)	non-coding (NR_125720, exon 2 of 3)	720.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78488338-2	chr11	78487838	78488838	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168521, intron 2 of 8)	intron (NM_001168521, intron 2 of 8)	9416.0	NM_001168521	237868.0	Mm.210332	NM_172795	ENSMUSG00000050132	Sarm1	A830091I15Rik|C78606|MyD885|Sarm	sterile alpha and HEAT/Armadillo motif containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99183472-4	chr9	99182967	99183967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-43256.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23756985-4	chr13	23756517	23757517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178193)	promoter-TSS (NM_178193)	80.0	NM_178193	326620.0	Mm.261642	NM_178193	ENSMUSG00000069266	Hist1h4b	-	histone cluster 1, H4b	protein-coding	94.5	185.0	132.0	76.5	174.5	117.0
Merged-chr12-100168151-2	chr12	100167651	100168651	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8498.0	NM_183155	217827.0	Mm.224076	NM_183155	ENSMUSG00000021179	Nrde2	6720454P05Rik	nrde-2 necessary for RNA interference, domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-19771440-4	chr14	19770964	19771964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008695, intron 4 of 20)	intron (NM_008695, intron 4 of 20)	20207.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59243629-5	chr2	59243163	59244163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	82813.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41519949-1	chr10	41519449	41520449	+	1000.0	f0_balb.idr	intron (NM_016898, intron 1 of 5)	CpG	449.0	NM_016898	53599.0	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-103241896-4	chr9	103241458	103242458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11672.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45882541-2	chr4	45882041	45883041	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305421, intron 16 of 18)	intron (NM_001305421, intron 16 of 18)	-7762.0	NM_198660	381522.0	Mm.54220	NM_198660	ENSMUSG00000035539	Ccdc180	E230008N13Rik|Gm1025	coiled-coil domain containing 180	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102218987-4	chr11	102218482	102219482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284248, intron 4 of 28)	intron (NM_001284248, intron 4 of 28)	11168.0	NR_106179	102465892.0		NR_106179	ENSMUSG00000098863	Mir8101	Gm27705|mmu-mir-8101	microRNA 8101	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52513021-4	chr2	52512518	52513518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	45593.0	NM_146123	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122604503-4	chr6	122604029	122605029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008108)	TTS (NM_008108)	-2085.0	NM_001134391	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	4.0	8.0	7.5	1.5	2.5	3.5
Merged-chr17-33955279-1	chr17	33954779	33955779	+	1000.0	f0_c57.idr	promoter-TSS (NM_001357330)	promoter-TSS (NM_001357330)	362.0	NM_011296	20084.0	Mm.298745	NM_011296	ENSMUSG00000008668	Rps18	H-2Ke3|H2-Ke3|Ke-3|ke3	ribosomal protein S18	protein-coding	198.5	554.5	284.5	205.0	367.0	325.5
Merged-chr1-191111369-4	chr1	191110871	191111871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12957.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	108.5	284.0	227.0	137.0	392.5	197.5
Merged-chr18-63692439-4	chr18	63691949	63692949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016792)	promoter-TSS (NM_016792)	-90.0	NM_016792	53382.0	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155276863-4	chr2	155276374	155277374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046364, intron 1 of 2)	CpG	510.0	NR_046364	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	7.0	28.0	25.5	2.0	34.0	27.5
Merged-chr13-88821867-4	chr13	88821410	88822410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010103, exon 1 of 10)	5' UTR (NM_010103, exon 1 of 10)	438.0	NM_001037987	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	5.5	21.5	20.5	0.0	3.0	0.5
Merged-chr3-144688423-3	chr3	144687927	144688927	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019464, exon 9 of 9)	3' UTR (NM_019464, exon 9 of 9)	31908.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123136989-4	chr5	123136488	123137488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4359.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	19.5	20.0	25.5	27.0	35.0	35.0
Merged-chr10-119040015-4	chr10	119039488	119040488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152787, intron 3 of 3)	intron (NR_152787, intron 3 of 3)	10511.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	10.0	3.5	8.0	4.5	3.0	4.0
Merged-chr2-29827244-4	chr2	29826745	29827745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026615)	promoter-TSS (NM_026615)	-144.0	NM_026615	68205.0	Mm.20273	NM_026615	ENSMUSG00000069020	Urm1	2900073H19Rik	ubiquitin related modifier 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121354429-4	chr11	121353897	121354897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025793)	promoter-TSS (NM_025793)	50.0	NM_025793	66840.0	Mm.103986	NM_025793	ENSMUSG00000025173	Wdr45b	0610008N23Rik|AA408735|D16Bwg0193e|WIPI-3|Wdr45l	WD repeat domain 45B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69198077-8	chr12	69197577	69198577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033222, exon 2 of 2)	non-coding (NR_033222, exon 2 of 2)	352.0	NM_027269	109065.0	Mm.107180	NM_027269	ENSMUSG00000020973	Dnaaf2	Ktu|TU54|kintoun|mknt	dynein, axonemal assembly factor 2	protein-coding	4.5	5.5	1.5	0.0	2.5	2.0
Merged-chr15-66476090-4	chr15	66475586	66476586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019457, intron 3 of 11)	intron (NM_019457, intron 3 of 11)	24824.0	NM_019457	54562.0	Mm.244890	NM_019457	ENSMUSG00000022375	Lrrc6	LRTP	leucine rich repeat containing 6 (testis)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55591677-4	chr14	55591157	55592157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011190)	promoter-TSS (NM_011190)	-85.0	NM_194346	268749.0	Mm.23748	NM_194346	ENSMUSG00000047098	Rnf31	AL033293|BC031509|Flj10111|HOIP|Paul|mFLJ00217	ring finger protein 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55461314-4	chr11	55460802	55461802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009720)	promoter-TSS (NM_009720)	-94.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-70637775-3	chr13	70637280	70638280	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144837)	promoter-TSS (NM_144837)	-146.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80798541-4	chr10	80797996	80798996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013651)	promoter-TSS (NM_013651)	130.0	NM_023900	78670.0	Mm.41479	NM_023900	ENSMUSG00000035278	Plekhj1	9530063M10Rik	pleckstrin homology domain containing, family J member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113908852-4	chr5	113908361	113909361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011779)	promoter-TSS (NM_011779)	-155.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-33285613-4	chr4	33285123	33286123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24688.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	4.0	5.5	1.0	2.0	13.5	2.5
Merged-chr7-28277713-4	chr7	28277202	28278202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177427)	promoter-TSS (NM_001177427)	-4.0	NM_001177427	434156.0	Mm.118535	NM_001177427	ENSMUSG00000070705	Eid2b	3010005C08Rik	EP300 interacting inhibitor of differentiation 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71135279-4	chr17	71134777	71135777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48255.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-28004603-4	chr5	28004110	28005110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66802.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	6.0	32.0	23.0	6.0	33.5	33.5
Merged-chr6-108658152-3	chr6	108657661	108658661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NR_104577, intron 1 of 6)	intron (NR_104577, intron 1 of 6)	-2468.0	NM_011498	20893.0	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	92.0	163.5	126.5	111.0	514.5	230.0
Merged-chr17-8506251-3	chr17	8505751	8506751	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20550.0	NM_001290707	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100445453-4	chr12	100444952	100445952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 5 of 19)	intron (NM_001033213, intron 5 of 19)	75370.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98941987-4	chr11	98941488	98942488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177303, intron 1 of 8)	intron (NM_001177303, intron 1 of 8)	2277.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-99435361-4	chr6	99434857	99435857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053202)	promoter-TSS (NM_053202)	-12.0	NM_053202	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134097321-5	chr4	134096763	134097763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2190.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	89.5	214.5	158.0	76.5	179.5	136.5
Merged-chr13-9185329-2	chr13	9184829	9185829	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91196.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68852643-1	chr11	68852143	68853143	+	1000.0	f0_balb.idr	intron (NM_023668, intron 1 of 8)	CpG	488.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44766247-2	chr16	44765747	44766747	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	511.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12796772-4	chr19	12796267	12797267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024093)	promoter-TSS (NR_024093)	574.0	NM_001361971	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	105.5	334.5	292.0	136.5	299.0	226.5
Merged-chr7-105633213-2	chr7	105632713	105633713	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029802)	TTS (NM_029802)	358.0	NM_018880	55992.0	Mm.29290	NM_018880	ENSMUSG00000036989	Trim3	BERP1|HAC1|Rnf22	tripartite motif-containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70925020-4	chr17	70924515	70925515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64415.0	NR_035427	100316676.0		NR_035427	ENSMUSG00000080468	Mir1195	Mirn1195|mmu-mir-1195	microRNA 1195	ncRNA	39.5	55.0	74.5	17.0	75.0	43.0
Merged-chr15-95793087-4	chr15	95792586	95793586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	2243.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55040245-4	chr13	55039747	55040747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359758, intron 11 of 14)	intron (NM_001359758, intron 11 of 14)	-18862.0	NM_001033245	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4085802-2	chr7	4085302	4086302	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033568, intron 6 of 8)	intron (NR_033568, intron 6 of 8)	-22598.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3379205-1	chr19	3378705	3379705	+	1000.0	f0_balb.idr	intron (NM_013495, intron 15 of 18)	intron (NM_013495, intron 15 of 18)	-9652.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87640511-4	chr1	87640004	87641004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	20192.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34025784-2	chr17	34025273	34026273	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029800)	promoter-TSS (NR_029800)	-681.0	NR_029800	723823.0		NR_029800	ENSMUSG00000065555	Mir219a-1	Mir219-1|Mirn219-1|mir-219a-1|mmu-mir-219a-1	microRNA 219a-1	ncRNA	0.5	26.5	12.0	0.0	21.0	9.5
Merged-chr2-52945830-2	chr2	52945330	52946330	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	87962.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-6109039-2	chr18	6108539	6109539	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039692, intron 3 of 18)	intron (NM_001039692, intron 3 of 18)	27059.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	0.0	2.5	6.0	8.0	28.0	12.5
Merged-chr2-163642938-4	chr2	163642423	163643423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012032, intron 1 of 9)	RLTR4_Mm|LTR|ERV1	-1927.0	NR_028113	68386.0	Mm.410649	NR_028113	ENSMUSG00000058812	0610039K10Rik	-	RIKEN cDNA 0610039K10 gene	ncRNA	17.0	71.0	47.5	14.0	71.5	45.5
Merged-chr9-21146923-4	chr9	21146433	21147433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016742, intron 1 of 7)	intron (NM_016742, intron 1 of 7)	2973.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-38193040-3	chr13	38192542	38193542	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023842, exon 23 of 24)	exon (NM_023842, exon 23 of 24)	-11897.0	NM_026382	67797.0	Mm.250783	NM_026382	ENSMUSG00000021431	Snrnp48	1110050F08Rik|6530403A03Rik|C6orf151	small nuclear ribonucleoprotein 48 (U11/U12)	protein-coding	0.0	0.0	0.0	6.5	12.5	8.5
Merged-chr1-55088194-4	chr1	55087694	55088694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008303)	promoter-TSS (NM_008303)	46.0	NM_008303	15528.0	Mm.215667	NM_008303	ENSMUSG00000073676	Hspe1	10kDa|Hsp10|mt-cpn10	heat shock protein 1 (chaperonin 10)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34784674-2	chr2	34784174	34785174	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145522, exon 6 of 8)	exon (NM_145522, exon 6 of 8)	12584.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58582182-4	chr9	58581697	58582697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009145)	promoter-TSS (NM_009145)	-43.0	NM_001293673	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-18319633-4	chr3	18319133	18320133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76295.0	NM_007825	13123.0	Mm.316000	NM_007825	ENSMUSG00000039519	Cyp7b1	AW261589|D3Ertd552e|hct-1	cytochrome P450, family 7, subfamily b, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97041518-4	chr11	97041032	97042032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357808)	promoter-TSS (NM_001357808)	-28.0	NM_001357807	107732.0	Mm.208946	NM_026154	ENSMUSG00000001445	Mrpl10	0610040E02Rik|C78440|MRP-L8|Rpml8	mitochondrial ribosomal protein L10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127675332-4	chr10	127674810	127675810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1755.0	NM_173732	210035.0	Mm.251075	NM_173732	ENSMUSG00000040195	Nemp1	Tmem194|Tmem194a	nuclear envelope integral membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-8769320-4	chr16	8768827	8769827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30985.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35996039-2	chr12	35995539	35996539	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011783, intron 3 of 7)	intron (NM_011783, intron 3 of 7)	3114.0	NM_011783	23795.0	Mm.7244	NM_011783	ENSMUSG00000020581	Agr2	Agr2h|Gob-4|HAG-2|XAG-2|mAG-2	anterior gradient 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112594675-4	chr12	112594187	112595187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198411, intron 1 of 22)	intron (NM_198411, intron 1 of 22)	5903.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-96983393-2	chr5	96982893	96983893	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14296.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30977423-4	chr16	30976937	30977937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 3 of 3)	intron (NM_198626, intron 3 of 3)	103995.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45302641-2	chr19	45302141	45303141	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-61093.0	NM_001360122	12234.0	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	0.0	1.0	2.0	0.0	1.0	0.5
Merged-chr12-111039221-4	chr12	111038747	111039747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198023)	promoter-TSS (NM_198023)	-551.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134425380-1	chr6	134424880	134425880	+	1000.0	f0_c57.idr	intron (NM_001355686, intron 2 of 5)	intron (NM_001355686, intron 2 of 5)	10952.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	42.0	102.5	66.0	46.5	134.0	74.0
Merged-chr12-55468935-2	chr12	55468435	55469435	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23712.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46602184-4	chr4	46601682	46602682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164804)	promoter-TSS (NM_001164804)	-253.0	NM_001164804	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	2.5	4.0	0.0	4.0	4.0	6.5
Merged-chr1-135746286-4	chr1	135745768	135746768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360782, intron 3 of 5)	intron (NM_001360782, intron 3 of 5)	17101.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65682583-1	chr18	65682083	65683083	+	1000.0	f1_balb.idr	intron (NM_001361052, intron 6 of 8)	intron (NM_001361052, intron 6 of 8)	-15685.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	0.0	5.5	4.5	9.5	19.0	12.0
Merged-chr13-64312715-4	chr13	64312261	64313261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025370)	promoter-TSS (NM_025370)	-51.0	NM_025370	66129.0	Mm.491110	NM_025370	ENSMUSG00000021482	Aaed1	1110018J18Rik|AI849003	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding	14.0	18.0	14.5	13.0	9.5	15.5
Merged-chr5-140992461-4	chr5	140991967	140992967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175362, intron 1 of 24)	L1ME3|LINE|L1	8129.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108903203-2	chr12	108902703	108903703	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	8931.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116620571-4	chr7	116620070	116621070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116201.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70506586-4	chr8	70506103	70507103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151646)	promoter-TSS (NR_151646)	149.0	NM_001357209	66462.0	Mm.28242	NM_025577	ENSMUSG00000058833	Rex1bd	2810428I15Rik	required for excision 1-B domain containing	protein-coding	42.0	114.0	67.5	41.5	86.0	79.0
Merged-chr16-21925500-4	chr16	21924992	21925992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172821, intron 11 of 12)	intron (NM_172821, intron 11 of 12)	22060.0	NM_025693	66664.0	Mm.46480	NM_025693	ENSMUSG00000022856	Tmem41a	2900010K02Rik|5730578N08Rik	transmembrane protein 41a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-101976015-8	chr12	101975546	101976546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016856)	promoter-TSS (NM_016856)	72.0	NM_016856	51786.0	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	37.0	152.5	85.0	73.0	139.0	95.5
Merged-chr9-90244580-4	chr9	90244084	90245084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 2 of 12)	intron (NM_194334, intron 2 of 12)	26185.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-63007651-4	chr13	63007175	63008175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 1 of 15)	L1_Mus3|LINE|L1	42782.0	NM_001289924	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	4.0	7.5	11.0	3.5	22.5	11.0
Merged-chr8-70538180-4	chr8	70537679	70538679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1496.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	8.0	31.5	6.0	6.5	10.0	12.0
Merged-chr17-14943814-2	chr17	14943314	14944314	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175173)	promoter-TSS (NM_175173)	630.0	NM_026451	67912.0	Mm.390949	NM_026451	ENSMUSG00000050088	1600012H06Rik	-	RIKEN cDNA 1600012H06 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101984441-4	chr15	101983936	101984936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19906.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122572665-4	chr2	122572169	122573169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38608.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	58.5	100.5	121.0	109.5	236.5	150.5
Merged-chr9-48985158-4	chr9	48984652	48985652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175482)	promoter-TSS (NM_175482)	-233.0	NM_001359739	235323.0	Mm.21630	NM_175482	ENSMUSG00000032267	Usp28	9830148O20Rik|AU022237|mKIAA1515	ubiquitin specific peptidase 28	protein-coding	66.5	199.0	109.5	66.0	189.5	119.5
Merged-chr3-51559807-4	chr3	51559353	51560353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033624)	promoter-TSS (NR_033624)	96.0	NR_033624	100039684.0	Mm.387178	NR_033624		5031434O11Rik	AI481280|Gm2370	RIKEN cDNA 5031434O11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73460402-2	chr2	73459902	73460902	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-6513.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-62854741-4	chr5	62854253	62855253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 7 of 8)	intron (NM_001170705, intron 7 of 8)	40930.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	61.5	127.5	61.0	83.0	110.5	117.5
Merged-chr1-160195132-4	chr1	160194626	160195626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025474)	promoter-TSS (NM_025474)	-89.0	NM_025474	64659.0	Mm.29599	NM_025474	ENSMUSG00000058267	Mrps14	1810032L21Rik|AL022847|Rpms14	mitochondrial ribosomal protein S14	protein-coding	20.0	44.5	51.0	20.0	86.0	62.5
Merged-chr3-54807211-2	chr3	54806711	54807711	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133231, exon 1 of 3)	exon (NM_133231, exon 1 of 3)	580.0	NM_133231	170767.0	Mm.185735	NM_133231	ENSMUSG00000036615	Rfxap	5730495K23Rik	regulatory factor X-associated protein	protein-coding	3.0	8.5	17.0	5.5	6.0	18.5
Merged-chr19-43494276-2	chr19	43493776	43494776	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031396, intron 10 of 10)	RSINE1|SINE|B4	30329.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43029212-2	chr4	43028712	43029712	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023231, intron 8 of 9)	intron (NM_023231, intron 8 of 9)	2172.0	NM_023231	66592.0	Mm.331565	NM_023231	ENSMUSG00000028455	Stoml2	0610038F01Rik|MSLP2|SLP-2	stomatin (Epb7.2)-like 2	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr7-73617275-4	chr7	73616795	73617795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58900.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80579169-2	chr10	80578669	80579669	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1873.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93818919-4	chr16	93818434	93819434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-13187.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	76.0	159.5	166.5	68.5	254.0	175.5
Merged-chr8-95332076-7	chr8	95331554	95332554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024467)	promoter-TSS (NM_024467)	-104.0	NM_024467	79233.0	Mm.350514	NM_024467	ENSMUSG00000046556	Zfp319	AI225750|AI413472|Znf319|mKIAA1388	zinc finger protein 319	protein-coding	56.0	172.0	156.5	74.0	207.0	203.0
Merged-chr19-55232388-4	chr19	55231879	55232879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 4 of 20)	intron (NM_001081076, intron 4 of 20)	8857.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-121227006-4	chr6	121226503	121227503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_017379)	TTS (NM_017379)	16269.0	NM_017379	53857.0	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119568874-3	chr9	119568379	119569379	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021544, intron 1 of 27)	intron (NM_021544, intron 1 of 27)	-6201.0	NM_001253860	20271.0	Mm.103584	NM_021544	ENSMUSG00000032511	Scn5a	Nav1.5|Nav1.5c|SkM1|SkM2|mH1	sodium channel, voltage-gated, type V, alpha	protein-coding	0.0	0.0	2.0	0.0	1.5	5.5
Merged-chr6-35133829-4	chr6	35133333	35134333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164411)	promoter-TSS (NM_001164411)	-96.0	NM_001164414	53621.0	Mm.214525	NM_016877	ENSMUSG00000038784	Cnot4	Not4|Not4h|Not4hp	CCR4-NOT transcription complex, subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59506323-4	chr11	59505827	59506827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_135273, exon 1 of 4)	non-coding (NR_135273, exon 1 of 4)	313.0	NM_001291014	268417.0	Mm.239793	NM_172941	ENSMUSG00000020472	Zkscan17	Nizp1|Zfp496|Znf496	zinc finger with KRAB and SCAN domains 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23983592-4	chr17	23983081	23984081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8351.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	51.0	167.0	110.5	76.5	190.5	100.5
Merged-chr4-119127440-4	chr4	119126952	119127952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011400, intron 2 of 9)	intron (NM_011400, intron 2 of 9)	18707.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	12.0	27.5	28.5	11.0	29.5	33.0
Merged-chr17-43033263-2	chr17	43032763	43033763	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 1 of 5)	intron (NM_178589, intron 1 of 5)	16708.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	24.0	30.5	31.5	26.5	68.5	65.0
Merged-chr9-62829331-2	chr9	62828831	62829831	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-9456.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184615522-4	chr1	184615025	184616025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57834.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128270409-4	chr10	128269888	128270888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019963)	promoter-TSS (NM_019963)	-110.0	NM_019963	20847.0	Mm.293120	NM_019963	ENSMUSG00000040033	Stat2	1600010G07Rik|AW496480	signal transducer and activator of transcription 2	protein-coding	24.5	38.0	26.5	14.5	45.5	18.5
Merged-chr8-84656947-4	chr8	84656451	84657451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	5901.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	10.0	11.5	6.0	5.5	11.5	19.0
Merged-chr8-10948270-2	chr8	10947770	10948770	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19813.0	NR_135302	665306.0	Mm.358758	NR_030715	ENSMUSG00000038917	3930402G23Rik	-	RIKEN cDNA 3930402G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132768195-4	chr4	132767706	132768706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011284)	promoter-TSS (NM_011284)	-154.0	NM_011284	19891.0	Mm.2870	NM_011284	ENSMUSG00000028884	Rpa2	AA409079|AI325195|AU020965|RPA34|Rf-A2	replication protein A2	protein-coding	5.5	7.5	14.0	5.0	8.5	14.0
Merged-chr11-86757793-7	chr11	86757271	86758271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356393)	promoter-TSS (NM_001356393)	-204.0	NM_001356393	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-72274892-4	chr9	72274389	72275389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311105)	promoter-TSS (NM_001311105)	1.0	NM_001311105	235469.0	Mm.242791	NM_146224	ENSMUSG00000038535	Zfp280d	A930005F02Rik|BC027163|Suhw4|ZNF634|Znf280d	zinc finger protein 280D	protein-coding	12.5	52.5	27.0	5.0	11.0	7.5
Merged-chr4-135182050-4	chr4	135181573	135182573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61428.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34072493-4	chr11	34071991	34072991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 7 of 20)	intron (NM_010696, intron 7 of 20)	25563.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	1.5	0.0	0.5	0.0	3.5	3.0
Merged-chr1-180766851-4	chr1	180766369	180767369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40826.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24975957-4	chr2	24975453	24976453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146251)	promoter-TSS (NM_146251)	-80.0	NM_146251	241274.0	Mm.389243	NM_146251	ENSMUSG00000036833	Pnpla7	BC027342|E430013P11Rik|Nre	patatin-like phospholipase domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132731732-2	chr4	132731233	132732233	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201368, intron 1 of 2)	intron (NM_201368, intron 1 of 2)	813.0	NM_201368	381560.0	Mm.44558	NM_201368	ENSMUSG00000037752	Xkr8	4931440N07Rik|AI597014|Gm1031|XRG8|mXkr8	X-linked Kx blood group related 8	protein-coding	5.5	4.5	2.0	0.0	4.5	2.5
Merged-chr8-13671834-4	chr8	13671324	13672324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	5763.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	5.0	11.0	6.5	15.5	15.0	4.5
Merged-chr12-69241995-4	chr12	69241516	69242516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178253, intron 1 of 12)	CpG	184.0	NM_178253	271005.0	Mm.180969	NM_178253	ENSMUSG00000051890	Klhdc1	-	kelch domain containing 1	protein-coding	1.5	25.5	5.0	4.0	5.0	7.5
Merged-chr2-91196119-4	chr2	91195613	91196613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177730)	promoter-TSS (NM_001177730)	-997.0	NM_001177730	22259.0	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	40.0	108.0	71.5	30.0	83.0	94.0
Merged-chr6-83914765-2	chr6	83914260	83915260	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_008717, intron 1 of 26)	CpG	407.0	NM_001355284	18139.0	Mm.132392	NM_008717	ENSMUSG00000030016	Zfp638	AI323587|Np220|Zfml|Znf638|mNP220	zinc finger protein 638	protein-coding	33.5	80.0	73.5	26.0	89.0	101.0
Merged-chr11-102296213-6	chr11	102295698	102296698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098836, intron 1 of 12)	CpG	431.0	NM_001098836	217218.0	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	8.5	40.0	17.0	25.5	22.0	21.0
Merged-chr2-156190384-6	chr2	156189850	156190850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-6297.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	149.5	447.5	314.5	119.5	182.5	150.0
Merged-chr17-24167114-4	chr17	24166618	24167618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361533, intron 1 of 2)	intron (NM_001361533, intron 1 of 2)	1691.0	NM_001361535	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	85.5	205.0	120.0	86.5	218.5	132.0
Merged-chr1-135147843-1	chr1	135147343	135148343	+	1000.0	f0_c57.idr	intron (NM_026823, intron 1 of 6)	intron (NM_026823, intron 1 of 6)	1009.0	NM_026823	68724.0	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-47050572-4	chr7	47050082	47051082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026436)	promoter-TSS (NM_026436)	-58.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104219219-2	chr3	104218719	104219719	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133853, intron 1 of 21)	intron (NM_133853, intron 1 of 21)	1187.0	NM_133853	99470.0	Mm.264849	NM_133853	ENSMUSG00000052539	Magi3	4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding	0.5	1.0	0.0	0.5	1.0	0.0
Merged-chr18-73542196-4	chr18	73541701	73542701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30504.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-45520312-4	chr5	45519808	45520808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025895)	promoter-TSS (NM_025895)	79.0	NM_025895	66999.0	Mm.283045	NM_025895	ENSMUSG00000015804	Med28	1500003D12Rik|AI451633|AU045690|Eg1|FKSG20|magicin	mediator complex subunit 28	protein-coding	0.0	3.0	4.0	1.0	1.5	1.5
Merged-chr7-7130481-2	chr7	7129981	7130981	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029584)	TTS (NM_029584)	6274.0	NM_029584	76373.0	Mm.159732	NM_029584	ENSMUSG00000063535	Zfp773	2810409K11Rik	zinc finger protein 773	protein-coding	14.0	24.5	31.5	23.0	56.5	59.0
Merged-chr7-45522017-4	chr7	45521533	45522533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008654)	TTS (NM_008654)	4235.0	NM_008654	17872.0	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-29338858-4	chr10	29338359	29339359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110195, intron 5 of 5)	intron (NM_001110195, intron 5 of 5)	18854.0	NM_001284279	68031.0	Mm.28930	NM_026518	ENSMUSG00000038876	Rnf146	2610509H23Rik|Iduna	ring finger protein 146	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132198636-2	chr4	132198136	132199136	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145393, intron 4 of 4)	RSINE1|SINE|B4	13620.0	NM_145393	213541.0	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH domain family 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-24966425-4	chr19	24965954	24966954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4838.0	NM_146097	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	121.0	362.5	253.0	132.5	312.5	230.5
Merged-chr1-79581557-3	chr1	79581053	79582053	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90419.0	NM_183027	252903.0	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	1.5	4.5	5.0	8.0	6.5	4.5
Merged-chr19-44413342-2	chr19	44412842	44413842	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-5633.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14669607-4	chr8	14669142	14670142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-218894.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-93301156-4	chr13	93300664	93301664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2593.0	NM_147176	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-156197558-4	chr4	156197035	156198035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021604)	promoter-TSS (NM_021604)	-47.0	NM_021604	11603.0	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-28931956-2	chr6	28931456	28932456	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90663.0	NR_029567	387237.0		NR_029567	ENSMUSG00000065469	Mir129-1	Mirn129-1|Mirn129b|miR-129b|mir-129-1	microRNA 129-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69228136-4	chr12	69227614	69228614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011133)	promoter-TSS (NM_011133)	76.0	NM_011133	18974.0	Mm.9199	NM_011133	ENSMUSG00000020974	Pole2	-	polymerase (DNA directed), epsilon 2 (p59 subunit)	protein-coding	13.0	70.0	16.0	20.0	39.5	21.0
Merged-chr10-37400507-4	chr10	37400017	37401017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-261591.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76837569-6	chr12	76837059	76838059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145927)	promoter-TSS (NM_145927)	92.0	NM_145927	110606.0	Mm.151174	NM_145927	ENSMUSG00000033373	Fntb	2010013E13Rik|AA409500	farnesyltransferase, CAAX box, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116463713-2	chr4	116463213	116464213	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042743, intron 1 of 29)	CpG	468.0	NM_001042743	17776.0	Mm.9287	NM_008641	ENSMUSG00000003810	Mast2	MAST205|Mtssk	microtubule associated serine/threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155062222-4	chr1	155061716	155062716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21048.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90579258-4	chr2	90578774	90579774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	1373.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41384632-3	chr19	41384164	41385164	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 1 of 16)	intron (NM_031376, intron 1 of 16)	406.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	111.0	308.5	203.0	75.5	204.0	122.0
Merged-chr17-84119375-4	chr17	84118864	84119864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40704.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153084409-4	chr2	153083904	153084904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18449.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	102.5	269.5	216.5	86.0	324.5	264.0
Merged-chr16-13903118-4	chr16	13902643	13903643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053181)	promoter-TSS (NM_053181)	2.0	NM_001039533	94184.0	Mm.171484	NM_053181	ENSMUSG00000022680	Pdxdc1	2210010A19Rik|AA415817|Kiaa0251-hp	pyridoxal-dependent decarboxylase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-106881255-4	chr4	106880776	106881776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-30194.0	NM_198438	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	0.0	6.5	0.0	0.0	0.5	0.0
Merged-chr15-17603801-1	chr15	17603301	17604301	+	1000.0	f0_balb.idr	Intergenic	Intergenic	765826.0	NR_045711	70886.0	Mm.399021	NR_045711	ENSMUSG00000098150	4921515E04Rik	-	RIKEN cDNA 4921515E04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191575651-4	chr1	191575160	191576160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001306203)	promoter-TSS (NM_001306203)	24.0	NM_001306204	77065.0	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	78.0	170.0	127.5	101.0	180.5	131.0
Merged-chr7-80079022-4	chr7	80078517	80079517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	-3760.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	1.5	23.5	14.0	2.5	3.5	10.0
Merged-chr18-50125816-4	chr18	50125303	50126303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2398.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80836137-4	chr7	80835636	80836636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25972.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	13.0	22.5	35.0	6.5	7.0	12.5
Merged-chr15-89177332-4	chr15	89176825	89177825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	-3374.0	NM_001159521	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27937629-7	chr15	27937149	27938149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	88199.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-41290005-4	chr12	41289503	41290503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	196054.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85456010-2	chr12	85455510	85456510	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17880.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126213028-2	chr7	126212528	126213528	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12527.0	NM_028816	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32211044-4	chr19	32210549	32211549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168526)	promoter-TSS (NM_001168526)	-36.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21453189-4	chr9	21452698	21453698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 1 of 19)	intron (NM_001357721, intron 1 of 19)	28290.0	NM_001357719	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55413410-2	chr13	55412910	55413910	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011392, exon 13 of 13)	exon (NM_011392, exon 13 of 13)	1822.0	NM_029303	75477.0	Mm.432537	NM_029303	ENSMUSG00000044444	Pfn3	1700012P12Rik	profilin 3	protein-coding	1.5	1.0	0.0	0.0	1.5	0.0
Merged-chr4-155735110-2	chr4	155734610	155735610	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001101506, exon 1 of 4)	exon (NM_001101506, exon 1 of 4)	306.0	NM_001101506	381582.0	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	6.5	14.0	1.5	3.0	7.0	4.0
Merged-chr19-55934129-2	chr19	55933629	55934629	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001331147)	TTS (NM_001331147)	38808.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-93303728-4	chr13	93303234	93304234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284189)	promoter-TSS (NM_001284189)	-23.0	NM_147176	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	62.5	97.0	75.0	59.0	115.0	58.0
Merged-chr5-122762359-4	chr5	122761887	122762887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199676, intron 2 of 16)	PB1D9|SINE|Alu	17023.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-58829352-4	chr7	58828879	58829879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009728)	TTS (NM_009728)	171177.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-32908416-4	chr13	32907917	32908917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-10277.0	NM_173051	380839.0	Mm.250802	NM_173051	ENSMUSG00000079049	Serpinb1c	EIC|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1c	protein-coding	5.5	1.5	1.0	5.5	1.5	1.0
Merged-chr17-50157543-4	chr17	50157049	50158049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	32948.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-19570110-4	chr4	19569597	19570597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356481)	promoter-TSS (NM_001356481)	11.0	NM_027769	70568.0	Mm.38390	NM_027769	ENSMUSG00000028228	Cpne3	5430428M23Rik|5730450C07Rik|C85108|CPN3	copine III	protein-coding	9.0	49.5	37.5	35.5	76.5	40.5
Merged-chr7-100537061-4	chr7	100536553	100537553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183270)	promoter-TSS (NM_183270)	-47.0	NM_183270	68185.0	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	85.5	168.0	135.5	119.0	244.5	204.0
Merged-chr14-45669911-4	chr14	45669404	45670404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-11761.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	42.0	73.5	52.5	25.5	59.5	55.0
Merged-chr6-81447891-4	chr6	81447412	81448412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	447751.0	NR_106091	102465711.0		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA	4.0	43.0	27.0	25.0	24.0	33.0
Merged-chr5-136706841-1	chr5	136706341	136707341	+	1000.0	f1_balb.idr	Intergenic	Intergenic	12664.0	NM_001085387	59310.0	Mm.5178	NM_021611	ENSMUSG00000005474	Myl10	1700027I08Rik|Mylc2pl|PLRLC	myosin, light chain 10, regulatory	protein-coding	0.0	4.0	3.5	0.0	1.0	3.5
Merged-chr1-170897180-4	chr1	170896683	170897683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11643.0	NM_023173	80915.0	Mm.34365	NM_023173	ENSMUSG00000026659	Dusp12	1190004O14Rik|AA027408|AW049275|ESTM36|LMW-DSP4|T-DSP4|VH1|mVH1	dual specificity phosphatase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3913934-4	chr11	3913436	3914436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_153142, exon 1 of 2)	5' UTR (NM_153142, exon 1 of 2)	728.0	NM_153142	103710.0	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81663929-4	chr15	81663447	81664447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110362)	promoter-TSS (NR_110362)	58.0	NR_110362	214669.0	Mm.280768	NM_145993	ENSMUSG00000022394	L3mbtl2	4732493N06Rik|M4mbt	L3MBTL2 polycomb repressive complex 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49165950-4	chr16	49165463	49166463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166210, intron 33 of 40)	intron (NM_001166210, intron 33 of 40)	108477.0	NM_001166210	667772.0	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-113430790-2	chr11	113430290	113431290	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027216, intron 5 of 9)	intron (NM_027216, intron 5 of 9)	135025.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	10.0	2.0	2.5	7.5	15.0	12.5
Merged-chr5-36576412-4	chr5	36575921	36576921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113362, intron 2 of 14)	intron (NM_001113362, intron 2 of 14)	5976.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	62.0	149.0	131.5	120.0	132.0	79.0
Merged-chr1-36073379-4	chr1	36072874	36073874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	MLT1A1|LTR|ERVL-MaLR	4974.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-14832853-2	chr9	14832353	14833353	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018736, intron 19 of 19)	intron (NM_018736, intron 19 of 19)	-27357.0	NM_001310734	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74227505-4	chr1	74226991	74227991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9026.0	NM_001357387	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5770798-2	chr17	5770298	5771298	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27859.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59366348-4	chr4	59365805	59366805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 9 of 16)	intron (NM_001163288, intron 9 of 16)	72328.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	6.0	11.0	7.0	17.0	27.5	33.0
Merged-chr12-33311284-4	chr12	33310849	33311849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033436, intron 1 of 7)	L1MB5|LINE|L1	8834.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58133903-4	chr15	58133411	58134411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027435, intron 1 of 27)	intron (NM_027435, intron 1 of 27)	1171.0	NM_027435	70472.0	Mm.221758	NM_027435	ENSMUSG00000022360	Atad2	2610509G12Rik	ATPase family, AAA domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13245728-4	chr9	13245220	13246220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033181)	promoter-TSS (NM_001033181)	21.0	NM_001033181	77532.0	Mm.459434	NM_001033181	ENSMUSG00000079083	Jrkl	C030035D04Rik|HHMJG	Jrk-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39206618-1	chr6	39206118	39207118	+	1000.0	f0_c57.idr	exon (NM_001033430, exon 1 of 20)	exon (NM_001033430, exon 1 of 20)	155.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69758652-4	chr11	69758165	69759165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291068)	promoter-TSS (NM_001291068)	-32.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	11.0	11.5	9.5	5.5	20.5	11.0
Merged-chr10-78440142-4	chr10	78439669	78440669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172134, exon 11 of 11)	3' UTR (NM_172134, exon 11 of 11)	4988.0	NR_105873	102466762.0		NR_105873	ENSMUSG00000098279	Mir6908	Gm27827|mmu-mir-6908	microRNA 6908	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103037245-4	chr14	103036691	103037691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3388.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-67500527-4	chr13	67500044	67501044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001007575)	promoter-TSS (NM_001007575)	-22.0	NM_001007575	238693.0	Mm.478914	NM_001007575	ENSMUSG00000071291	Zfp58	A530094I17Rik|Mfg-1|Mfg1|Rslcan5|Zfp817	zinc finger protein 58	protein-coding	16.5	40.5	23.5	22.5	48.5	28.5
Merged-chr6-85333990-4	chr6	85333472	85334472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178639)	promoter-TSS (NM_178639)	-550.0	NM_178639	94282.0	Mm.121485	NM_178639	ENSMUSG00000033720	Sfxn5	C230001H08Rik	sideroflexin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128834626-4	chr6	128834144	128835144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-8329.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	7.0	15.0	27.5	8.0	27.0	27.0
Merged-chr10-121374381-4	chr10	121373871	121374871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029364, exon 3 of 14)	exon (NM_029364, exon 3 of 14)	9281.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	18.0	50.5	23.5	13.5	38.0	25.0
Merged-chr16-29735791-4	chr16	29735313	29736313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	156479.0	NM_001199177	74143.0	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	3.0	8.0	2.5	3.5	2.0	9.0
Merged-chr7-123377930-4	chr7	123377422	123378422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025304)	promoter-TSS (NM_025304)	-60.0	NM_025304	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3744321-4	chr4	3743832	3744832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 4 of 12)	intron (NM_001111096, intron 4 of 12)	29368.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	120.5	263.5	222.0	119.5	235.5	185.0
Merged-chr9-106368521-4	chr9	106367997	106368997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153459)	promoter-TSS (NM_153459)	-135.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	10.5	48.5	33.5	7.5	45.0	12.0
Merged-chr12-84712855-2	chr12	84712355	84713355	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14048.0	NM_001033334	627191.0	Mm.152484	NM_001033334	ENSMUSG00000071234	Syndig1l	DSPC1|Gm261|SynDIG2|Tmem90a	synapse differentiation inducing 1 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65587089-4	chr9	65586586	65587586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357526)	promoter-TSS (NM_001357526)	-74.0	NR_151702	208084.0	Mm.211032	NM_172453	ENSMUSG00000041064	Pif1	4631410M14|AI449441	PIF1 5'-to-3' DNA helicase	protein-coding	0.0	0.0	0.0	0.0	8.0	0.5
Merged-chr7-110266025-4	chr7	110265525	110266525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009302, intron 5 of 11)	intron (NM_009302, intron 5 of 11)	44322.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-101608828-4	chr14	101608308	101609308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081278, exon 1 of 19)	5' UTR (NM_001081278, exon 1 of 19)	383.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34122644-4	chr17	34122110	34123110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010386)	promoter-TSS (NM_010386)	-3.0	NM_001204973	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32562440-2	chr4	32561940	32562940	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001109661, exon 3 of 5)	exon (NM_001109661, exon 3 of 5)	9222.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74804028-3	chr17	74803531	74804531	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152817, intron 13 of 19)	MER20|DNA|hAT-Charlie	86281.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	23.5	64.0	27.0	4.0	3.0	2.0
Merged-chr17-23980706-4	chr17	23980203	23981203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-5473.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	71.5	165.0	106.0	125.5	159.0	115.5
Merged-chr9-88953357-4	chr9	88952858	88953858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3562.0	NM_009742	12044.0	Mm.425593	NM_009742	ENSMUSG00000102037	Bcl2a1a	A1|BB218357|Bcl2a1|Bfl-1|Hbpa1	B cell leukemia/lymphoma 2 related protein A1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28179412-4	chr7	28178914	28179914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010092)	promoter-TSS (NM_010092)	-69.0	NM_001037957	13549.0	Mm.57249	NM_010092	ENSMUSG00000002409	Dyrk1b	Mirk	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50471419-4	chr17	50470917	50471917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38130.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	11.0	43.5	19.5	5.0	47.5	17.0
Merged-chr1-171281259-4	chr1	171280774	171281774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008911)	promoter-TSS (NM_008911)	-88.0	NM_008911	19044.0	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	105.0	208.0	134.0	80.5	187.0	127.0
Merged-chr1-87626553-4	chr1	87626050	87627050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	6238.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79812994-4	chr12	79812473	79813473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 10 of 10)	intron (NM_009014, intron 10 of 10)	111760.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47189403-4	chr14	47188906	47189906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008102)	promoter-TSS (NM_008102)	7.0	NM_008102	14528.0	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTP-CH-I|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	52.0	141.0	117.5	32.5	143.0	128.5
Merged-chr17-88058095-4	chr17	88057599	88058599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081034, intron 1 of 22)	PB1D9|SINE|Alu	6833.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	1.5	8.5	6.0	1.0	23.5	3.0
Merged-chr1-165736281-4	chr1	165735761	165736761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27497.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-84735309-4	chr16	84734781	84735781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017404)	promoter-TSS (NM_017404)	21.0	NM_017404	27393.0	Mm.103655	NM_017404	ENSMUSG00000022889	Mrpl39	C21orf8|MRP-L5|ORF22|Rpml5	mitochondrial ribosomal protein L39	protein-coding	64.0	80.0	71.0	28.5	27.5	24.5
Merged-chr10-44631773-4	chr10	44631269	44632269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-173021.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78916543-4	chr17	78916042	78917042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177402)	promoter-TSS (NM_001177402)	43.0	NM_001177402	68554.0	Mm.391820	NM_001177402	ENSMUSG00000062691	Cebpzos	1110001A16Rik	CCAAT/enhancer binding protein (C/EBP), zeta, opposite strand	protein-coding	18.0	54.5	54.0	46.5	63.0	45.5
Merged-chr4-93335497-4	chr4	93335004	93336004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026954)	promoter-TSS (NM_026954)	7.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	29.5	56.0	30.0	26.5	86.0	39.5
Merged-chr5-139484571-4	chr5	139484067	139485067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159908)	promoter-TSS (NM_001159908)	-76.0	NM_001159908	100494.0	Mm.24521	NM_133349	ENSMUSG00000053581	Zfand2a	AA407930|AU016206|Airap	zinc finger, AN1-type domain 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-109082070-2	chr9	109081595	109082595	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025689)	promoter-TSS (NM_025689)	286.0	NM_183250	66167.0	Mm.2395	NM_183250	ENSMUSG00000091537	Tma7	1110017O22Rik|Ccdc72	translational machinery associated 7	protein-coding	10.5	30.5	35.5	20.0	39.0	46.5
Merged-chr13-113615735-5	chr13	113615253	113616253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	2811.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4714945-3	chr11	4714446	4715446	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026015, intron 1 of 5)	intron (NM_026015, intron 1 of 5)	10290.0	NM_001356390	67178.0	Mm.271056	NM_026015	ENSMUSG00000009076	Zmat5	2610510L01Rik|D11Bwg0572e|D11Bwg1548e	zinc finger, matrin type 5	protein-coding	6.5	12.5	14.5	2.5	2.0	0.5
Merged-chr14-73169537-4	chr14	73169031	73170031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134083, intron 10 of 14)	Lx3_Mus|LINE|L1	26746.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-21568692-3	chr12	21568198	21569198	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-151262.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	0.0	0.0	0.0	1.0	6.5	9.0
Merged-chr13-49421178-4	chr13	49420693	49421693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199056)	promoter-TSS (NM_199056)	-30.0	NR_075085	75678.0	Mm.390586	NM_199056	ENSMUSG00000021385	Ippk	1810043M15Rik|InsP6	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80404307-4	chr7	80403801	80404801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081454, intron 1 of 15)	intron (NM_001081454, intron 1 of 15)	1135.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	37.5	64.0	78.0	35.0	79.0	74.0
Merged-chr14-25469642-2	chr14	25469142	25470142	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	10457.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3656446-4	chr4	3655961	3656961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040643)	promoter-TSS (NR_040643)	-45.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	12.5	50.0	28.0	14.0	37.0	35.0
Merged-chr5-5367715-4	chr5	5367197	5368197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	12554.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	207.5	546.5	367.5	157.5	265.0	247.0
Merged-chr18-68059578-4	chr18	68059071	68060071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	126398.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70615253-2	chr8	70614688	70615688	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1656.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	57.0	356.5	236.0	105.0	281.0	213.0
Merged-chr1-132341911-4	chr1	132341410	132342410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25785.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45221221-2	chr14	45220721	45221721	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027518, intron 1 of 6)	intron (NM_027518, intron 1 of 6)	1504.0	NM_027518	70713.0	Mm.343793	NM_027518	ENSMUSG00000049092	Gpr137c	6330416L11Rik|Gm908|TM7SF1L2	G protein-coupled receptor 137C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8871520-4	chr19	8871012	8872012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362044)	promoter-TSS (NM_001362044)	-36.0	NM_146093	225896.0	Mm.27839	NM_146093	ENSMUSG00000071655	Ubxn1	2B28|4930455J02Rik|D19Ertd721e|T25529|mY33K	UBX domain protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109706002-2	chr8	109705502	109706502	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029468)	promoter-TSS (NM_029468)	-17.0	NM_029468	75871.0	Mm.180410	NM_029468	ENSMUSG00000031728	Zfp821	4930566A11Rik|Znf821	zinc finger protein 821	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-8509812-4	chr6	8509316	8510316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040452)	promoter-TSS (NR_040452)	216.0	NM_133236	170772.0	Mm.210787	NM_133236	ENSMUSG00000029638	Glcci1	2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1	glucocorticoid induced transcript 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-142091270-4	chr4	142090764	142091764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6960.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	38.5	110.5	91.0	40.0	81.5	90.0
Merged-chr4-106317198-2	chr4	106316698	106317698	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183225, intron 1 of 67)	intron (NM_183225, intron 1 of 67)	985.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	1.0	1.5	6.0	6.0	1.0	9.0
Merged-chr8-94363504-4	chr8	94362996	94363996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019415, intron 24 of 24)	intron (NM_019415, intron 24 of 24)	-22933.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34249688-4	chr10	34249157	34250157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32533.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120316227-4	chr11	120315726	120316726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31187.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-80454202-4	chr1	80453705	80454705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040460, intron 2 of 2)	ORR1E|LTR|ERVL-MaLR	8273.0	NR_040460	72208.0	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan	RIKEN cDNA 1700016L21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46452545-5	chr4	46452000	46453000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130889, intron 1 of 6)	CpG	1574.0	NM_130889	67628.0	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	49.5	103.0	99.0	51.5	106.0	94.5
Merged-chr6-106800046-4	chr6	106799520	106800520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175357)	promoter-TSS (NM_175357)	67.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107012811-4	chr11	107012288	107013288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-13263.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9670580-3	chr4	9670108	9671108	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-1264.0	NM_001290367	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	10.0	40.0	21.0	3.5	27.0	9.5
Merged-chr19-34213079-3	chr19	34212579	34213579	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	-4429.0	NM_001360719	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	4.0	5.5	2.0	9.5	49.0	32.0
Merged-chr12-41197453-4	chr12	41196968	41197968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	173378.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67712787-4	chr10	67712278	67713278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamRep38|DNA|hAT	-140819.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8859659-4	chr10	8859156	8860156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	B1F1|SINE|Alu	26414.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-91313401-4	chr8	91312907	91313907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173431)	promoter-TSS (NM_173431)	-118.0	NM_011936	26383.0	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	73.5	135.0	148.0	17.0	90.0	82.0
Merged-chr1-179517575-2	chr1	179517075	179518075	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027188, intron 1 of 11)	intron (NM_027188, intron 1 of 11)	466.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75921432-7	chr10	75920923	75921923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001161853, exon 1 of 9)	5' UTR (NM_001161853, exon 1 of 9)	191.0	NM_011418	20587.0	Mm.279751	NM_011418	ENSMUSG00000000902	Smarcb1	AU020204|Baf47|Ini1|SNF5/INI1|Snf5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-52684440-4	chr18	52683930	52684930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9249.0	NM_010293	14625.0	Mm.32242	NM_010293	ENSMUSG00000053624	Gykl1	AI449806|Gk-rs1	glycerol kinase-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32130357-4	chr16	32129873	32130873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30571.0	NM_025892	66994.0	Mm.22990	NM_025892	ENSMUSG00000035790	Cep19	1500031L02Rik|AI428934|AL022620	centrosomal protein 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147546510-2	chr5	147546010	147547010	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001359433, exon 20 of 20)	3' UTR (NM_001359433, exon 20 of 20)	116354.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166021244-4	chr2	166020732	166021732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	28595.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	7.5	22.5	28.5	13.5	31.0	20.5
Merged-chr2-52943878-4	chr2	52943386	52944386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	86018.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121571691-4	chr3	121571189	121572189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39345.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102532315-3	chr2	102531819	102532819	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17702.0	NM_173749	210622.0	Mm.28649	NM_173749	ENSMUSG00000027188	Pamr1	5930437L24|E430002G05Rik|Ramp	peptidase domain containing associated with muscle regeneration 1	protein-coding	1.5	11.5	2.0	0.5	10.5	0.0
Merged-chr1-36573987-4	chr1	36573515	36574515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-15634.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-39005853-4	chr8	39005339	39006339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030254)	promoter-TSS (NM_030254)	-6.0	NM_030254	80286.0	Mm.272722	NM_030254	ENSMUSG00000039530	Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding	11.5	40.0	22.0	17.0	32.0	35.5
Merged-chr17-45686941-4	chr17	45686430	45687430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198167)	promoter-TSS (NM_198167)	581.0	NM_026732	68463.0	Mm.379158	NM_026732	ENSMUSG00000023939	Mrpl14	1110006I11Rik|AI846816|MRP-L32|Rpml32	mitochondrial ribosomal protein L14	protein-coding	37.5	102.5	52.0	36.0	52.0	55.0
Merged-chr7-81317118-2	chr7	81316618	81317618	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 13 of 21)	intron (NM_008803, intron 13 of 21)	28116.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-89222567-2	chr9	89222067	89223067	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359993, intron 2 of 2)	B1F1|SINE|Alu	11183.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	1.0	1.0	1.5	1.0	2.0	5.0
Merged-chr11-106276622-4	chr11	106276109	106277109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029467)	promoter-TSS (NM_029467)	-63.0	NM_029467	75870.0	Mm.159608	NM_029467	ENSMUSG00000020712	Tcam1	4930570F09Rik|AI429105	testicular cell adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23437088-2	chr13	23436588	23437588	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6071.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80114539-4	chr12	80114054	80115054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1541.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	42.0	148.0	68.5	55.0	89.0	60.5
Merged-chr17-5800330-1	chr17	5799830	5800830	+	1000.0	f0_balb.idr	intron (NR_045080, intron 1 of 1)	intron (NR_045080, intron 1 of 1)	840.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-85114098-4	chr16	85113600	85114600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 2 of 15)	MLT1A|LTR|ERVL-MaLR	59607.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156179627-4	chr2	156179128	156180128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291115)	promoter-TSS (NM_001291115)	-48.0	NM_001291115	170791.0	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding	235.5	479.5	347.0	212.0	565.0	399.5
Merged-chr2-4450060-4	chr2	4449543	4450543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	49067.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-149678370-4	chr5	149677860	149678860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081204, exon 1 of 15)	exon (NM_001081204, exon 1 of 15)	103.0	NM_001081204	381694.0	Mm.45060	NM_001081204	ENSMUSG00000051950	B3glct	B3galtl|Gm1057	beta-3-glucosyltransferase	protein-coding	0.0	0.0	0.0	0.0	3.0	0.5
Merged-chr2-104123259-1	chr2	104122759	104123759	+	1000.0	f1_c57bl6.idr	exon (NM_026634, exon 1 of 2)	exon (NM_026634, exon 1 of 2)	490.0	NM_026634	68243.0	Mm.158191	NM_026634	ENSMUSG00000032671	A930018P22Rik	-	RIKEN cDNA A930018P22 gene	protein-coding	2.5	10.5	7.0	0.0	5.0	1.5
Merged-chr13-52100245-4	chr13	52099773	52100773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045061, intron 3 of 7)	intron (NR_045061, intron 3 of 7)	3532.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66088454-4	chr5	66087954	66088954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	9725.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	57.5	186.0	105.0	27.0	89.5	58.5
Merged-chr17-74316431-4	chr17	74315978	74316978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146223)	promoter-TSS (NM_001146223)	-45.0	NM_001146223	66310.0	Mm.28536	NM_024428	ENSMUSG00000024067	Dpy30	2810410M20Rik|C87842	dpy-30, histone methyltransferase complex regulatory subunit	protein-coding	0.0	45.5	24.0	19.0	45.5	19.5
Merged-chr11-100822586-4	chr11	100822086	100823086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011489)	promoter-TSS (NM_011489)	-16.0	NM_011489	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	14.5	10.0	16.0	14.5	12.0	16.0
Merged-chr19-4064351-2	chr19	4063852	4064852	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	-4905.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50413691-2	chr17	50413191	50414191	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-95856.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34751642-4	chr18	34751141	34752141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009860)	promoter-TSS (NM_009860)	-108.0	NM_009860	12532.0	Mm.286602	NM_009860	ENSMUSG00000044201	Cdc25c	Cdc25	cell division cycle 25C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122377478-4	chr2	122376972	122377972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8554.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	64.5	235.5	168.0	118.5	248.5	187.5
Merged-chr1-43337538-4	chr1	43337041	43338041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108210.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9943238-7	chr19	9942807	9943807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37293.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	11.5	16.0	9.5	14.0	20.5	12.5
Merged-chr3-127409051-3	chr3	127408572	127409572	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001327939)	promoter-TSS (NM_001327939)	-14.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	13.5	27.5	31.5	0.5	0.0	0.0
Merged-chr9-113928098-2	chr9	113927598	113928598	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-2836.0	NM_001083319	22221.0	Mm.28052	NM_013699	ENSMUSG00000009741	Ubp1	Cp2b|LBP-1a|LBP-1b|NF2d9	upstream binding protein 1	protein-coding	6.5	5.5	0.0	2.5	21.0	1.0
Merged-chr7-132656277-4	chr7	132655774	132656774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 6 of 6)	intron (NM_029609, intron 6 of 6)	45631.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153749335-4	chr1	153748830	153749830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011882)	promoter-TSS (NM_011882)	-96.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6992658-4	chr19	6992162	6993162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357001)	promoter-TSS (NM_001357001)	-80.0	NM_001357000	57431.0	Mm.10721	NM_020566	ENSMUSG00000024963	Dnajc4	Hspf2|Mcg18	DnaJ heat shock protein family (Hsp40) member C4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-82470241-4	chr12	82469762	82470762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-146663.0	NM_001310478	50779.0	Mm.126176	NM_015812	ENSMUSG00000021219	Rgs6	-	regulator of G-protein signaling 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32402994-4	chr16	32402511	32403511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160402, intron 1 of 4)	intron (NM_001160402, intron 1 of 4)	2505.0	NM_001160402	277203.0	Mm.484240	NM_001160402	ENSMUSG00000079625	Tm4sf19	EG277203	transmembrane 4 L six family member 19	protein-coding	18.5	20.0	15.0	18.0	20.5	18.5
Merged-chr12-99796111-4	chr12	99795629	99796629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030172, intron 5 of 5)	intron (NM_030172, intron 5 of 5)	87313.0	NM_030172	78767.0	Mm.235920	NM_030172	ENSMUSG00000021176	Efcab11	2610021K21Rik|2610110A13Rik	EF-hand calcium binding domain 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-13983038-2	chr13	13982538	13983538	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362405, intron 5 of 12)	MTC|LTR|ERVL-MaLR	28364.0	NM_178640	97884.0	Mm.21686	NM_178640	ENSMUSG00000039242	B3galnt2	A930105D20Rik|C80633|D230016N13Rik	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-130731284-2	chr3	130730784	130731784	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026724)	promoter-TSS (NM_026724)	-886.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62449890-8	chr10	62449386	62450386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181423)	promoter-TSS (NM_181423)	-148.0	NM_181423	338359.0	Mm.235898	NM_181423	ENSMUSG00000020079	Supv3l1	6330443E10Rik	suppressor of var1, 3-like 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78457942-4	chr10	78457461	78458461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172134, intron 1 of 10)	intron (NM_172134, intron 1 of 10)	6987.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96616867-4	chr10	96616360	96617360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007569)	promoter-TSS (NM_007569)	-141.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64252904-3	chr9	64252479	64253479	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008927, intron 1 of 10)	intron (NM_008927, intron 1 of 10)	626.0	NM_008927	26395.0	Mm.248907	NM_008927	ENSMUSG00000004936	Map2k1	MAPKK1|MEKK1|Mek1|Prkmk1	mitogen-activated protein kinase kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59228970-2	chr11	59228469	59229469	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130408)	promoter-TSS (NM_001130408)	-702.0	NM_007476	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	17.5	49.5	31.0	5.5	33.5	31.5
Merged-chr3-97934056-4	chr3	97933538	97934538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033779, intron 1 of 1)	intron (NM_001033779, intron 1 of 1)	3865.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-62527646-4	chr17	62527104	62528104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	353713.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20997302-4	chr9	20996819	20997819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-5418.0	NM_023167	66163.0	Mm.427576	NM_023167	ENSMUSG00000003299	Mrpl4	1110017G11Rik	mitochondrial ribosomal protein L4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128370803-4	chr10	128370294	128371294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081040)	promoter-TSS (NM_001081040)	-757.0	NM_001081040	210582.0	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61486484-1	chr18	61485984	61486984	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-1877.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	0.5	26.5	19.5	48.5	93.0	59.0
Merged-chr1-166339313-4	chr1	166338799	166339799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39868.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45814448-4	chr7	45813963	45814963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001112701)	promoter-TSS (NM_001112701)	-147.0	NM_001112701	19158.0	Mm.272130	NM_011181	ENSMUSG00000003269	Cyth2	ARNO|CLM2|Pscd2	cytohesin 2	protein-coding	0.0	4.0	8.0	0.0	0.5	1.5
Merged-chr10-128923107-4	chr10	128922604	128923604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015740, intron 1 of 3)	CpG	420.0	NM_015740	14533.0	Mm.30118	NM_015740	ENSMUSG00000090247	Bloc1s1	AI839753|BLOS1|Gcn5l1	biogenesis of lysosomal organelles complex-1, subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135670561-4	chr1	135670063	135671063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49500.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131690670-4	chr1	131690167	131691167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145509, intron 1 of 5)	intron (NM_145509, intron 1 of 5)	1972.0	NM_145509	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	222.5	274.0	255.5	137.5	211.0	258.0
Merged-chr10-110917644-2	chr10	110917144	110918144	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-2532.0	NM_007792	13008.0	Mm.2020	NM_007792	ENSMUSG00000020186	Csrp2	AW551867|Crp2|SmLim	cysteine and glycine-rich protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83031078-4	chr15	83030557	83031557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271411, intron 1 of 5)	intron (NM_001271411, intron 1 of 5)	-1107.0	NM_001271413	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	6.5	4.0	12.0	6.0	2.5	9.0
Merged-chr14-61647710-2	chr14	61647210	61648210	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	-15600.0	NR_029733	387174.0		NR_029733	ENSMUSG00000093007	Mir15a	Mirn15a|mir-15a|mmu-mir-15a	microRNA 15a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31290965-4	chr16	31290501	31291501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15724.0	NM_025800	66849.0	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|I-2|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	19.5	16.5	12.5	13.0	18.5	14.5
Merged-chr9-65740779-3	chr9	65740279	65741279	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172536, intron 2 of 9)	intron (NM_172536, intron 2 of 9)	64231.0	NM_001301307	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	0.0	11.5	4.5	26.0	64.0	38.0
Merged-chr2-152826783-2	chr2	152826283	152827283	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	1706.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99179882-4	chr9	99179378	99180378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39667.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76531005-4	chr16	76530490	76531490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17805.0	NR_155449	102632730.0		NR_155449		Gm30726	-	predicted gene, 30726	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122874478-4	chr6	122873965	122874965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026267)	promoter-TSS (NM_026267)	-92.0	NM_026267	67602.0	Mm.288114	NM_026267	ENSMUSG00000030327	Necap1	1200016B17Rik|AI747569|mFLJ00061	NECAP endocytosis associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-6171171-2	chr7	6170671	6171671	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1342.0	NM_028316	72667.0	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115601921-4	chr6	115601424	115602424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023290)	promoter-TSS (NM_023290)	-14.0	NM_023290	67027.0	Mm.101316	NM_023290	ENSMUSG00000000439	Mkrn2	2610002L04Rik|C81377	makorin, ring finger protein, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161497492-4	chr1	161497005	161498005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183391, intron 1 of 2)	MIR|SINE|MIR	2848.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	21.0	47.0	15.0	17.0	12.0	10.5
Merged-chr15-95821380-2	chr15	95820875	95821875	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	ORR1A2|LTR|ERVL-MaLR	8697.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-113072-1	chr1	112572	113572	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	3558426.0	NM_001011874	497097.0	Mm.454496	NM_001011874	ENSMUSG00000051951	Xkr4	AY534250|Gm210|XRG4|mKIAA1889	X-linked Kx blood group related 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129351330-4	chr6	129350825	129351825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177686, intron 1 of 5)	RSINE1|SINE|B4	1081.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-57651753-3	chr8	57651241	57652241	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040698)	promoter-TSS (NR_040698)	-12.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	30.0	25.0	14.0	7.5	21.0	24.5
Merged-chr10-7211622-4	chr10	7211130	7212130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172546, intron 1 of 12)	CpG	607.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	107.0	259.0	176.5	58.0	158.0	100.0
Merged-chr6-125095344-2	chr6	125094844	125095844	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145979)	promoter-TSS (NM_145979)	-637.0	NM_001346610	107932.0	Mm.333388	NM_145979	ENSMUSG00000063870	Chd4	9530019N15Rik|AA617397|BC005710|D6Ertd380e|Mi-2beta|mKIAA4075	chromodomain helicase DNA binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-30842847-4	chr10	30842348	30843348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013904)	promoter-TSS (NM_013904)	-65.0	NM_013904	15214.0	Mm.103573	NM_013904	ENSMUSG00000019789	Hey2	CHF1|Herp1|Hrt2|bHLHb32|hesr2	hairy/enhancer-of-split related with YRPW motif 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-18239241-4	chr14	18238706	18239706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011584)	promoter-TSS (NM_011584)	-100.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	0.5	16.5	7.0	1.0	6.5	8.5
Merged-chr15-98727503-2	chr15	98727003	98728003	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357893, exon 1 of 5)	5' UTR (NM_001357893, exon 1 of 5)	124.0	NM_001357893	66120.0	Mm.30729	NM_024169	ENSMUSG00000003355	Fkbp11	1110002O23Rik|FKBP-11	FK506 binding protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-71187588-4	chr9	71187101	71188101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110517, intron 5 of 5)	intron (NR_110517, intron 5 of 5)	18825.0	NR_110517	102635087.0	Mm.444536	NR_110517	ENSMUSG00000111429	Gm32511	-	predicted gene, 32511	ncRNA	0.0	0.0	0.0	1.5	0.0	0.0
Merged-chr11-3147045-2	chr11	3146546	3147546	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 14 of 32)	B3|SINE|B2	23025.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-65144793-4	chr6	65144280	65145280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019455)	promoter-TSS (NM_019455)	-50.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-70661439-4	chr2	70660931	70661931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027352)	promoter-TSS (NM_027352)	-78.0	NR_027343	70231.0	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-63176775-4	chr1	63176393	63177393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160039)	promoter-TSS (NM_001160039)	62.0	NM_018796	55949.0	Mm.2718	NM_018796	ENSMUSG00000025967	Eef1b2	2810017J07Rik|Eef1b	eukaryotic translation elongation factor 1 beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67481906-4	chr15	67481393	67482393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	255124.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16100664-4	chr7	16100161	16101161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025898, intron 1 of 10)	intron (NM_025898, intron 1 of 10)	2081.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	21.5	52.5	58.5	25.0	37.5	29.5
Merged-chr14-27114826-4	chr14	27114305	27115305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-29188.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	30.0	36.5	42.0	20.0	53.5	30.5
Merged-chr1-86501768-4	chr1	86501273	86502273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24784.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95849965-4	chr15	95849480	95850480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253813, intron 2 of 20)	intron (NM_001253813, intron 2 of 20)	-19908.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-56071011-4	chr8	56070506	56071506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080438, intron 5 of 9)	RLTR28|LTR|ERVL	130181.0	NM_080438	110304.0	Mm.307061	NM_080438	ENSMUSG00000038257	Glra3	-	glycine receptor, alpha 3 subunit	protein-coding	4.5	13.5	7.0	9.0	13.0	4.0
Merged-chr12-31950440-4	chr12	31949957	31950957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361928)	promoter-TSS (NM_001361928)	-212.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	9.5	25.0	20.5	3.0	41.5	19.0
Merged-chr6-81446269-4	chr6	81445764	81446764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	449399.0	NR_106091	102465711.0		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA	7.0	16.0	22.0	9.5	22.5	13.5
Merged-chr5-118245122-4	chr5	118244609	118245609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172998)	promoter-TSS (NM_172998)	-84.0	NM_001109902	269695.0	Mm.320042	NM_172998	ENSMUSG00000032850	Rnft2	AW049082|B830028P19Rik|Tmem118	ring finger protein, transmembrane 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118619130-4	chr9	118618628	118619628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	12419.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191990184-4	chr1	191989681	191990681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8453.0	NR_039566	100628582.0		NR_039566	ENSMUSG00000093003	Mir3473c	mmu-mir-3473c	microRNA 3473c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181691815-4	chr2	181691331	181692331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291205)	promoter-TSS (NM_001291205)	-14.0	NM_001291205	56470.0	Mm.274366	NM_026446	ENSMUSG00000002458	Rgs19	2610042F04Rik|AI324841|AW547781|GAIP	regulator of G-protein signaling 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35123194-2	chr9	35122694	35123694	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_029475, intron 2 of 5)	intron (NR_029475, intron 2 of 5)	-6330.0	NM_009178	20443.0	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	SIAT4-C|ST3Gal IV|ST3GalIV|Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25150761-2	chr9	25150261	25151261	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020586, intron 1 of 7)	intron (NM_020586, intron 1 of 7)	1020.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80192499-4	chr7	80191992	80192992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013659, intron 1 of 14)	intron (NM_013659, intron 1 of 14)	5651.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	34.5	65.0	59.0	32.0	88.0	79.5
Merged-chr11-75540252-1	chr11	75539752	75540752	+	1000.0	f1_c57bl6.idr	intron (NM_001199284, intron 2 of 13)	intron (NM_001199284, intron 2 of 13)	8140.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27210429-4	chr3	27209932	27210932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	27428.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20679768-2	chr18	20679268	20680268	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-14508.0	NR_155534	102633478.0		NR_155534	ENSMUSG00000085595	Gm16090	-	predicted gene 16090	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4510270-4	chr19	4509777	4510777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162946)	promoter-TSS (NM_001162946)	-195.0	NM_001162946	18563.0	Mm.1845	NM_008797	ENSMUSG00000024892	Pcx	Pc|Pcb	pyruvate carboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4907524-7	chr12	4907010	4908010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145441)	promoter-TSS (NM_145441)	10.0	NM_145441	217379.0	Mm.259170	NM_145441	ENSMUSG00000020634	Ubxn2a	6330407P03Rik|Ubxd4	UBX domain protein 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-35783174-4	chr13	35782681	35783681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001123386, intron 1 of 6)	intron (NM_001123386, intron 1 of 6)	41779.0	NM_001123386	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127196088-4	chr7	127195594	127196594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027353)	promoter-TSS (NM_027353)	-17.0	NM_027353	70233.0	Mm.28050	NM_027353	ENSMUSG00000042502	Cd2bp2	1500011B02Rik|2410024K20Rik|AW048183	CD2 antigen (cytoplasmic tail) binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80182636-1	chr11	80182136	80183136	+	1000.0	f1_balb.idr	Intergenic	URR1B|DNA|hAT-Charlie	-1236.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	12.0	31.0	17.0	13.0	29.0	11.0
Merged-chr10-40212603-4	chr10	40212096	40213096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34383.0	NM_001042556	67239.0	Mm.11480	NM_023323	ENSMUSG00000038510	Rpf2	2810470K21Rik|AU040229|AU043242|Bxdc1	ribosome production factor 2 homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86577408-4	chr11	86576904	86577904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6754.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104219282-4	chr8	104218755	104219755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001141922)	TTS (NM_001141922)	29303.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113631570-2	chr5	113631070	113632070	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	12033.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44331603-2	chr11	44331103	44332103	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68460.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129696775-4	chr4	129696267	129697267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199305)	promoter-TSS (NM_199305)	78.0	NM_199305	230770.0	Mm.257157	NM_199305	ENSMUSG00000053730	Tmem39b	6330509E05Rik|BC037095	transmembrane protein 39b	protein-coding	28.0	41.0	20.0	12.0	44.0	27.0
Merged-chr17-24528075-4	chr17	24527585	24528585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172114)	promoter-TSS (NM_001172114)	-147.0	NM_001172114	224619.0	Mm.275150	NM_153792	ENSMUSG00000052752	Traf7	RFWD1	TNF receptor-associated factor 7	protein-coding	25.5	70.5	52.5	22.5	67.5	73.5
Merged-chr14-101594490-4	chr14	101593950	101594950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	14741.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-59131388-4	chr12	59130911	59131911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165253)	promoter-TSS (NM_001165253)	-42.0	NM_001165253	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95797364-4	chr16	95796848	95797848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94941.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-134670759-4	chr7	134670256	134671256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033420)	promoter-TSS (NM_001033420)	69.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	0.0	1.5	1.5	1.0	1.0	1.5
Merged-chr4-109116683-4	chr4	109116195	109117195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355190, intron 2 of 21)	intron (NM_001355190, intron 2 of 21)	1341.0	NM_173350	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	20.0	74.0	60.5	24.5	84.5	63.5
Merged-chr2-113449459-4	chr2	113448956	113449956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 2 of 16)	intron (NM_001285459, intron 2 of 16)	8392.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	43.0	150.0	92.0	41.5	153.0	101.0
Merged-chr2-113848355-4	chr2	113847852	113848852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_181416, exon 1 of 12)	5' UTR (NM_181416, exon 1 of 12)	309.0	NM_181416	228482.0	Mm.45753	NM_181416	ENSMUSG00000041219	Arhgap11a	6530401L14Rik|mKIAA0013	Rho GTPase activating protein 11A	protein-coding	60.0	208.5	179.0	52.0	131.0	124.0
Merged-chr5-72851950-4	chr5	72851462	72852462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 1 of 17)	L2|LINE|L2	16486.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52938477-4	chr2	52937962	52938962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	80594.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-52801854-4	chr1	52801300	52802300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008384, intron 1 of 5)	intron (NM_008384, intron 1 of 5)	15888.0	NM_008384	16329.0	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	48.5	93.0	79.5	23.0	74.5	47.0
Merged-chr15-66093673-4	chr15	66093178	66094178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152923, intron 1 of 14)	C-rich|Low_complexity|Low_complexity	-116874.0	NM_001145096	654498.0	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-39962597-4	chr15	39962120	39963120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045719)	promoter-TSS (NR_045719)	-29.0	NR_045719	105976.0	Mm.394885	NR_045719		AU022793	-	expressed sequence AU022793	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54447270-2	chr13	54446770	54447770	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21570.0	NM_028597	73666.0	Mm.292487	NM_028597	ENSMUSG00000025872	Thoc3	2410044K02Rik|AL033344	THO complex 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152932255-4	chr3	152931745	152932745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	49962.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77306875-5	chr15	77306350	77307350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001110827, exon 1 of 14)	5' UTR (NM_001110827, exon 1 of 14)	203.0	NM_001110827	93686.0	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-33018748-4	chr5	33018253	33019253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011738)	promoter-TSS (NM_011738)	-63.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83662522-4	chr8	83662033	83663033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018771, intron 4 of 6)	intron (NM_018771, intron 4 of 6)	-4111.0	NM_013641	19216.0	Mm.213000	NM_013641	ENSMUSG00000019464	Ptger1	EP1|Ptgerep1	prostaglandin E receptor 1 (subtype EP1)	protein-coding	4.5	14.5	0.5	0.0	0.0	0.5
Merged-chr11-100938331-4	chr11	100937836	100938836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_213660, intron 1 of 23)	intron (NM_213660, intron 1 of 23)	1204.0	NM_213660	20848.0	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36748675-4	chr5	36748171	36749171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133724)	promoter-TSS (NM_133724)	8.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28260095-4	chr17	28259589	28260589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 2 of 7)	intron (NM_011145, intron 2 of 7)	-11619.0	NR_045427	69050.0	Mm.486938	NR_045427	ENSMUSG00000002250	1810013A23Rik	-	RIKEN cDNA 1810013A23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-167394287-5	chr1	167393774	167394774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025569)	promoter-TSS (NM_025569)	-477.0	NM_025569	66447.0	Mm.218286	NM_025569	ENSMUSG00000026688	Mgst3	2010012L10Rik|2010306B17Rik|2700004G04Rik|AA516734|GST-III	microsomal glutathione S-transferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-51952590-4	chr15	51952080	51953080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	39180.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31494706-4	chr5	31494253	31495253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133756)	promoter-TSS (NM_133756)	12.0	NM_133756	74254.0	Mm.348649	NM_133756	ENSMUSG00000064037	Gpn1	2410004J02Rik|AI449615|MBDIN|NTPBP|Xab1	GPN-loop GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34632545-4	chr17	34632054	34633054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030890)	TTS (NM_030890)	2868.0	NM_030890	260297.0	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31|SynDIG4	proline-rich transmembrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-53566939-4	chr6	53566401	53567401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 5 of 10)	intron (NM_001327821, intron 5 of 10)	-6473.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	18.5	49.0	32.0	12.5	33.0	31.0
Merged-chr6-97210695-4	chr6	97210186	97211186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022992)	promoter-TSS (NM_022992)	-106.0	NM_022992	65106.0	Mm.291014	NM_022992	ENSMUSG00000035199	Arl6ip5	5930404D22Rik|AV001879|Aip-5|Gtrap3-18|addiscin	ADP-ribosylation factor-like 6 interacting protein 5	protein-coding	9.5	20.0	13.0	15.0	50.5	37.5
Merged-chr17-80482404-2	chr17	80481904	80482904	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1951.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-95590283-4	chr1	95589778	95590778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009183, exon 5 of 5)	3' UTR (NM_009183, exon 5 of 5)	77316.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-46994973-4	chr14	46994472	46995472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	-6368.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	5.5	33.0	19.0	20.0	30.0	52.0
Merged-chr11-61410357-2	chr11	61409857	61410857	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-32282.0	NM_026183	67473.0	Mm.100741	NM_026183	ENSMUSG00000010122	Slc47a1	1300013J15Rik|AI036982|MATE1|mMATE1	solute carrier family 47, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-80962987-4	chr13	80962502	80963502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1072.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8224439-3	chr15	8223940	8224940	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162906, intron 31 of 52)	MTD|LTR|ERVL-MaLR	55334.0	NM_001162906	73692.0	Mm.164436	NM_001162906	ENSMUSG00000039801	2410089E03Rik	4732468D17Rik|Hug|Jbts17|b2b012Clo	RIKEN cDNA 2410089E03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29548859-2	chr11	29548359	29549359	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024277)	promoter-TSS (NM_024277)	-819.0	NM_001033865	78294.0	Mm.180003	NM_024277	ENSMUSG00000020460	Rps27a	0610006J14Rik|Uba52|Ubb|Ubc	ribosomal protein S27A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36696732-4	chr5	36696229	36697229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081232)	promoter-TSS (NM_001081232)	-708.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-59438751-4	chr14	59438254	59439254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001320720, intron 1 of 13)	intron (NM_001320720, intron 1 of 13)	2126.0	NM_001320725	107303348.0		NM_001320725		Gm45935	Setdb2-phf11c	predicted gene, 45935	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82101672-4	chr11	82101174	82102174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011331)	promoter-TSS (NM_011331)	-171.0	NM_011331	20293.0	Mm.867	NM_011331	ENSMUSG00000035352	Ccl12	MCP-5|Scya12	chemokine (C-C motif) ligand 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182517546-4	chr1	182517040	182518040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009794)	promoter-TSS (NM_009794)	70.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59469923-2	chr4	59469423	59470423	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-31290.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-13760283-4	chr17	13759803	13760803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010806)	promoter-TSS (NM_010806)	-238.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120353085-4	chr2	120352578	120353578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027618)	promoter-TSS (NR_027618)	55.0	NR_027618	269338.0	Mm.246131	NM_147153	ENSMUSG00000027291	Vps39	A230065P22Rik|AW743070|Vam6|Vam6P|mVam6	VPS39 HOPS complex subunit	protein-coding	13.0	3.5	14.5	6.0	11.0	7.0
Merged-chr2-48814002-6	chr2	48813490	48814490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007396)	promoter-TSS (NM_007396)	-119.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23683524-2	chr13	23683024	23684024	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290380)	promoter-TSS (NM_001290380)	435.0	NM_178189	319164.0	Mm.261973	NM_178189	ENSMUSG00000069270	Hist1h2ac	-	histone cluster 1, H2ac	protein-coding	51.0	183.5	104.5	66.0	156.0	96.0
Merged-chr4-85005776-4	chr4	85005283	85006283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175275, intron 11 of 25)	intron (NM_175275, intron 11 of 25)	121474.0	NM_177385	338349.0	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120086902-4	chr11	120086381	120087381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009734)	promoter-TSS (NM_009734)	-54.0	NM_009734	12009.0	Mm.2556	NM_009734	ENSMUSG00000039781	Cep131	AZ1|Azi|Azi1	centrosomal protein 131	protein-coding	8.5	3.0	2.0	0.0	4.0	2.0
Merged-chr16-4881521-2	chr16	4881021	4882021	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1670.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151025331-4	chr1	151024838	151025838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	UCON26|Unknown|Unknown	-31903.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22156791-4	chr9	22156310	22157310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001082532)	promoter-TSS (NM_001082532)	-36.0	NM_001082532	66268.0	Mm.28924	NM_025457	ENSMUSG00000010607	Pigyl	1810008A14Rik|PIG-Y|Pigy	phosphatidylinositol glycan anchor biosynthesis, class Y-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88565232-1	chr5	88564732	88565732	+	1000.0	f0_c57.idr	exon (NM_001289775, exon 1 of 13)	exon (NM_001289775, exon 1 of 13)	192.0	NM_001289775	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36270800-4	chr1	36270294	36271294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153408, intron 1 of 3)	intron (NM_153408, intron 1 of 3)	2631.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91358640-3	chr16	91358128	91359128	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14155.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20077301-4	chr10	20076818	20077818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 12 of 29)	intron (NM_008580, intron 12 of 29)	-71602.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0.0	2.5	6.5	2.5	14.0	6.0
Merged-chr18-14783924-4	chr18	14783418	14784418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001100449, exon 1 of 15)	exon (NM_001100449, exon 1 of 15)	673.0	NM_001100449	72504.0	Mm.312233	NM_001100449	ENSMUSG00000054321	Taf4b	105kDa|2610524B04Rik|4932409F03Rik|AW987595|TAFII-105|TAFII105|Taf2c2	TATA-box binding protein associated factor 4b	protein-coding	34.0	52.5	52.0	20.5	31.5	27.5
Merged-chr10-67595435-4	chr10	67594954	67595954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23495.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53414998-4	chr15	53414478	53415478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-68795.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85305674-4	chr12	85305179	85306179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145138, intron 19 of 21)	intron (NM_145138, intron 19 of 21)	17088.0	NM_172414	72350.0	Mm.158810	NM_172414	ENSMUSG00000045064	Zc2hc1c	2810002I04Rik|AV046379|Fam164c	zinc finger, C2HC-type containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51416646-4	chr3	51416132	51417132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053089, intron 1 of 19)	CpG	616.0	NM_053089	74838.0	Mm.275281	NM_053089	ENSMUSG00000063273	Naa15	5730450D16Rik|6330400I15|ASTBDN|Narg1|Tbdn-1|mNAT1	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-69861597-4	chr14	69861087	69862087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 3 of 6)	intron (NM_028560, intron 3 of 6)	21180.0	NM_028526	73523.0	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59729013-4	chr15	59728517	59729517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	65942.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97094433-4	chr7	97093930	97094930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	MLT1G|LTR|ERVL-MaLR	12679.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.0	6.0	1.5	3.5	0.0	0.0
Merged-chr17-8836447-4	chr17	8835938	8836938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011866, intron 1 of 21)	intron (NM_011866, intron 1 of 21)	-13547.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80128756-4	chr12	80128247	80129247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033514, intron 2 of 2)	intron (NR_033514, intron 2 of 2)	4097.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0.0	0.5	1.5	0.0	0.5	1.5
Merged-chr2-167752999-4	chr2	167752504	167753504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61827.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139198810-1	chr4	139198310	139199310	+	1000.0	f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	4699.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	51.0	123.0	57.5	49.0	116.5	73.5
Merged-chr12-25178015-4	chr12	25177515	25178515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48841.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	5.5	16.0	2.0	4.5	3.0	5.5
Merged-chr7-66103178-2	chr7	66102678	66103678	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6337.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102431186-4	chr11	102430708	102431708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008175, intron 1 of 12)	intron (NM_008175, intron 1 of 12)	886.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86850285-2	chr6	86849785	86850785	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028298)	promoter-TSS (NR_028298)	768.0	NM_001040106	269774.0	Mm.221038	NM_177762	ENSMUSG00000057230	Aak1	5530400K14Rik|9630042K20|AU067724|AU067726|BC028270|C79663|D6Ertd245e|R75501|mKIAA1048	AP2 associated kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73179748-2	chr15	73179248	73180248	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	5199.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86487401-4	chr6	86486902	86487902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040292, intron 1 of 1)	intron (NR_040292, intron 1 of 1)	825.0	NR_040293	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-24603844-4	chr18	24603364	24604364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139143)	promoter-TSS (NM_139143)	-47.0	NM_139143	106957.0	Mm.21688	NM_139143	ENSMUSG00000024270	Slc39a6	Ermelin|Zip6	solute carrier family 39 (metal ion transporter), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145303800-4	chr6	145303307	145304307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53255.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	178.5	480.5	273.5	150.0	423.5	277.0
Merged-chr2-164455049-4	chr2	164454544	164455544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5927.0	NM_025575	66460.0	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-41364122-4	chr8	41363633	41364633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019734, intron 1 of 13)	intron (NM_019734, intron 1 of 13)	10564.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	14.0	92.5	44.5	14.0	47.0	37.5
Merged-chr3-146107629-4	chr3	146107126	146108126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172864, intron 1 of 22)	intron (NM_172864, intron 1 of 22)	410.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	1.0	15.5	16.0	2.0	17.0	15.0
Merged-chr13-92241590-4	chr13	92241097	92242097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010829, intron 19 of 23)	intron (NM_010829, intron 19 of 23)	-113186.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr1-40087671-4	chr1	40087181	40088181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360800, intron 1 of 8)	MER5A|DNA|hAT-Charlie	1588.0	NM_001360800	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145249550-4	chr6	145249059	145250059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045598)	promoter-TSS (NR_045598)	672.0	NM_021284	16653.0	Mm.383182	NM_021284	ENSMUSG00000030265	Kras	AI929937|K-Ras|K-Ras 2|K-ras|Ki-ras|Kras-2|Kras2|c-K-ras|c-Ki-ras|p21B|ras	Kirsten rat sarcoma viral oncogene homolog	protein-coding	26.5	143.5	65.5	32.5	130.5	83.0
Merged-chr13-42052844-4	chr13	42052338	42053338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 1 of 8)	intron (NM_007772, intron 1 of 8)	817.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-45415173-4	chr8	45414717	45415717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4598.0	NM_126166	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110101037-4	chr9	110100533	110101533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252683)	promoter-TSS (NM_001252683)	54.0	NM_001252683	72831.0	Mm.276305	NM_133347	ENSMUSG00000032480	Dhx30	2810477H02Rik|C130058C04Rik|Ddx30|HELG|Ret-CoR	DEAH (Asp-Glu-Ala-His) box polypeptide 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34824601-2	chr1	34824101	34825101	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160235, intron 3 of 7)	intron (NM_001160235, intron 3 of 7)	18449.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107178519-4	chr4	107178057	107179057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025617)	promoter-TSS (NM_025617)	-73.0	NM_029565	56374.0	Mm.291192	NM_029565	ENSMUSG00000028618	Tmem59	1110001M20Rik|3110046P06Rik|AI256529|D4Ertd20e|MTDCF1|ORF18	transmembrane protein 59	protein-coding	11.5	38.5	19.5	13.0	53.0	28.5
Merged-chr18-90579701-4	chr18	90579202	90580202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362365)	promoter-TSS (NM_001362365)	-123.0	NM_001362365	108168395.0	Mm.391131	NM_001362365	ENSMUSG00000110277	Gm45871	-	predicted gene 45871	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-27195190-4	chr5	27194698	27195698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207282, intron 1 of 25)	intron (NM_207282, intron 1 of 25)	-66737.0	NM_001136060	13483.0	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	9.0	3.0	2.5	9.0	3.0	3.0
Merged-chr7-19465994-4	chr7	19465515	19466515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7521.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	31.0	69.5	58.5	21.5	60.5	63.0
Merged-chr14-9635670-4	chr14	9635165	9636165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 8 of 9)	intron (NM_001360141, intron 8 of 9)	-248430.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-75079557-2	chr5	75079057	75080057	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3956.0	NM_133256	14843.0	Mm.218752	NM_133256	ENSMUSG00000035946	Gsx2	Gsh-2|Gsh2	GS homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-71008496-4	chr11	71007983	71008983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291147, exon 7 of 7)	3' UTR (NM_001291147, exon 7 of 7)	-4051.0	NM_178367	216877.0	Mm.35399	NM_178367	ENSMUSG00000040620	Dhx33	3110057P17Rik|9430096J02Rik|Ddx33	DEAH (Asp-Glu-Ala-His) box polypeptide 33	protein-coding	7.0	24.5	21.0	13.0	12.5	26.5
Merged-chr10-8505807-4	chr10	8505308	8506308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 1 of 7)	intron (NM_177387, intron 1 of 7)	13017.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	8.0	11.0	5.5	2.5	2.0	2.0
Merged-chr4-59548677-4	chr4	59548206	59549206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144904, intron 1 of 14)	CpG	658.0	NM_178164	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43689684-4	chr19	43689186	43690186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053103)	promoter-TSS (NM_053103)	-3.0	NM_053103	93685.0	Mm.248237	NM_053103	ENSMUSG00000025192	Entpd7	1810012B13Rik|1810020C02Rik|2810003F23Rik|LALP1|Lysal2	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130642885-4	chr2	130642386	130643386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197945)	promoter-TSS (NM_197945)	-42.0	NM_001291027	241638.0	Mm.440130	NM_197945	ENSMUSG00000037703	Lzts3	Prosapip1	leucine zipper, putative tumor suppressor family member 3	protein-coding	1.0	12.0	8.5	1.5	10.0	8.0
Merged-chr7-66079620-4	chr7	66079120	66080120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024439)	promoter-TSS (NM_024439)	-29.0	NM_001348246	109815.0	Mm.482127	NM_024439	ENSMUSG00000075701	Selenos	1500011E07Rik|C78786|H-4|H-47|H4|H47|Sels|Vimp	selenoprotein S	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127590480-5	chr10	127590012	127591012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 12 of 88)	intron (NM_008512, intron 12 of 88)	30636.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	35.0	67.0	45.0	11.5	54.5	55.0
Merged-chr18-67396718-4	chr18	67396207	67397207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026473, intron 3 of 3)	intron (NM_026473, intron 3 of 3)	5976.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	53.0	134.0	50.5	54.0	174.5	98.5
Merged-chr10-121614163-2	chr10	121613663	121614663	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359618, intron 6 of 24)	intron (NM_001359618, intron 6 of 24)	12169.0	NM_001081056	73192.0	Mm.25042	NM_001081056	ENSMUSG00000034667	Xpot	1110004L07Rik|3110065H13Rik|AI452076|C79645|EXPORTIN-T	exportin, tRNA (nuclear export receptor for tRNAs)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119928432-4	chr11	119927914	119928914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 2)	intron (NR_039557, intron 2 of 2)	14604.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124230074-4	chr8	124229596	124230596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1298.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	66.5	193.5	76.0	29.0	165.5	67.0
Merged-chr16-8830643-3	chr16	8830144	8831144	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081400, exon 1 of 4)	exon (NM_001081400, exon 1 of 4)	544.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20835412-4	chr10	20834907	20835907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-110329.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40807811-4	chr9	40807330	40808330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6557.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	82.5	246.5	128.5	50.5	194.0	114.5
Merged-chr15-101224164-4	chr15	101223680	101224680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019518)	promoter-TSS (NM_019518)	-27.0	NM_019518	56149.0	Mm.276573	NM_019518	ENSMUSG00000000531	Grasp	tamalin	GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein	protein-coding	0.0	3.0	1.0	0.0	3.0	1.0
Merged-chr8-120561530-2	chr8	120561030	120562030	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 2 of 15)	intron (NM_001145896, intron 2 of 15)	22834.0	NR_106159	102466849.0		NR_106159	ENSMUSG00000098280	Mir7687	Gm27573|mmu-mir-7687	microRNA 7687	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-94178934-4	chr2	94178435	94179435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21026.0	NM_019657	56348.0	Mm.22505	NM_019657	ENSMUSG00000027195	Hsd17b12	2610510O05Rik|AI172963|KIK-I|Kik1	hydroxysteroid (17-beta) dehydrogenase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43496811-4	chr13	43496329	43497329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15856.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	18.5	21.0	45.5	21.0	37.5	26.5
Merged-chr13-111805358-4	chr13	111804854	111805854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	(TC)n|Simple_repeat|Simple_repeat	3639.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	47.5	80.5	102.0	43.0	113.5	64.5
Merged-chr10-22731864-2	chr10	22731364	22732364	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011603)	promoter-TSS (NM_011603)	-417.0	NM_011603	237336.0	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68264082-4	chr10	68263582	68264582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	14644.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	4.0	7.0	13.0	8.5	30.0	7.0
Merged-chr7-64356772-4	chr7	64356277	64357277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177893, intron 8 of 13)	intron (NM_177893, intron 8 of 13)	17318.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	18.0	16.0	15.0	9.0	14.0	21.0
Merged-chr1-45880688-2	chr1	45880188	45881188	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	44906.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-77826368-4	chr1	77825877	77826877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-311289.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30825630-4	chr14	30825112	30826112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028839)	promoter-TSS (NM_028839)	18.0	NM_028839	69179.0	Mm.143025	NM_028839	ENSMUSG00000006526	Tmem110	1810038N08Rik|2310014H19Rik|AW554125|STIMATE	transmembrane protein 110	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5406590-1	chr19	5406090	5407090	+	1000.0	f0_c57.idr	promoter-TSS (NR_015545)	promoter-TSS (NR_015545)	-225.0	NR_015545	74931.0	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	6.0	13.5	13.0	4.5	2.5	5.0
Merged-chr3-30992339-4	chr3	30991847	30992847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3424.0	NM_008857	18759.0	Mm.291554	NM_008857	ENSMUSG00000037643	Prkci	2310021H13Rik|AI427505|PKClambda|Pkci|Pkcl|Prkcl|aPKClambda|mKIAA4165	protein kinase C, iota	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39418102-4	chr6	39417605	39418605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018810, intron 1 of 7)	intron (NM_018810, intron 1 of 7)	1671.0	NM_001311109	54484.0	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62183242-4	chr10	62182721	62183721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11006.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30888528-4	chr5	30888035	30889035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001294262)	promoter-TSS (NM_001294262)	-317.0	NM_174849	231093.0	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-100642863-3	chr9	100642366	100643366	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357264)	promoter-TSS (NM_001357264)	-582.0	NM_009282	20842.0	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	69.5	149.0	127.5	63.0	172.5	119.0
Merged-chr13-95845188-4	chr13	95844762	95845762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	PB1D10|SINE|Alu	46660.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	134.0	508.5	285.5	94.0	210.0	136.5
Merged-chr2-167754073-4	chr2	167753569	167754569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62892.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95566519-4	chr9	95566015	95567015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6698.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	5.0	8.0	5.5	5.0	6.0	5.5
Merged-chr2-3621554-4	chr2	3621047	3622047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR35B_MM|LTR|ERVL	-91911.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-6492594-2	chr18	6492010	6493010	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007935, intron 1 of 13)	intron (NM_007935, intron 1 of 13)	-1653.0	NM_001276350	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	7.5	0.0	9.0	10.0	5.5	2.0
Merged-chr9-13536884-4	chr9	13536377	13537377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83112.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-140116483-4	chr7	140115985	140116985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053119)	promoter-TSS (NM_053119)	-62.0	NM_053119	93747.0	Mm.24452	NM_053119	ENSMUSG00000025465	Echs1	C80529	enoyl Coenzyme A hydratase, short chain, 1, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-115695270-4	chr3	115694738	115695738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19817.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	47.0	118.5	65.0	60.5	50.5	56.5
Merged-chr11-114826871-4	chr11	114826362	114827362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24670.0	NM_001110337	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87106849-4	chr17	87106383	87107383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019654)	promoter-TSS (NM_019654)	-796.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	28.5	35.5	33.5	28.0	37.5	38.0
Merged-chr10-93484678-4	chr10	93484179	93485179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008517, exon 19 of 19)	exon (NM_008517, exon 19 of 19)	-4089.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	116.0	147.5	171.0	70.5	182.5	139.0
Merged-chr8-13685836-4	chr8	13685348	13686348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD2|LINE|L1	-8261.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0.0	1.0	0.0	1.0	2.0	6.0
Merged-chr13-112365981-4	chr13	112365445	112366445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168403, intron 9 of 11)	intron (NM_001168403, intron 9 of 11)	77427.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	12.5	27.0	13.0	5.0	46.5	18.5
Merged-chr4-9676443-4	chr4	9675941	9676941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7097.0	NM_001290367	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	74.5	124.5	134.0	52.0	126.0	44.5
Merged-chr2-32982141-4	chr2	32981633	32982633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019488)	promoter-TSS (NM_019488)	-50.0	NR_151460	56017.0	Mm.305754	NM_019488	ENSMUSG00000026791	Slc2a8	D2Ertd44e|GLUT8|GlutX1	solute carrier family 2, (facilitated glucose transporter), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29125562-1	chr2	29125062	29126062	+	1000.0	f0_balb.idr	intron (NM_198033, intron 1 of 25)	CpG	570.0	NM_198033	269254.0	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90079530-4	chr3	90079038	90080038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293749)	promoter-TSS (NM_001293749)	17.0	NM_001293749	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	46.0	157.5	113.0	70.0	140.5	85.0
Merged-chr11-83282363-2	chr11	83281863	83282863	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166028, intron 2 of 4)	intron (NM_001166028, intron 2 of 4)	4363.0	NM_001166028	237890.0	Mm.297670	NM_001166028	ENSMUSG00000082101	Slfn14	Gm20|Slfn14-ps	schlafen 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98265810-4	chr12	98265310	98266310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2825.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45018043-4	chr19	45017526	45018526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130526)	promoter-TSS (NM_001130526)	-109.0	NM_001130526	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7764789-4	chr9	7764298	7765298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152989, intron 1 of 5)	intron (NR_152989, intron 1 of 5)	633.0	NR_152989	71929.0	Mm.283293	NM_133739	ENSMUSG00000050912	Tmem123	2310075C12Rik	transmembrane protein 123	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80128077-4	chr17	80127581	80128581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176963, intron 1 of 6)	intron (NM_176963, intron 1 of 6)	610.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70713702-4	chr12	70713192	70714192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111822.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93798779-4	chr16	93798289	93799289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027293, intron 27 of 36)	intron (NM_027293, intron 27 of 36)	-3888.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75179805-4	chr14	75179308	75180308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	43383.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7835222-4	chr10	7834676	7835676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172785, intron 1 of 5)	intron (NM_172785, intron 1 of 5)	-1205.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	167.0	313.5	244.0	236.5	420.5	273.0
Merged-chr17-34143197-4	chr17	34142700	34143700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2216.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	114.0	255.0	193.5	60.5	188.0	104.5
Merged-chr15-39737662-4	chr15	39737173	39738173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8257.0	NM_001289506	75766.0	Mm.159563	NM_029422	ENSMUSG00000022303	Dcstamp	4833414I07Rik|DC-STAMP|FIND|Tm7sf4|mDC-STAMP	dendrocyte expressed seven transmembrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122984598-4	chr3	122984088	122985088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133857)	promoter-TSS (NM_133857)	-141.0	NM_133857	99526.0	Mm.491248	NM_133857	ENSMUSG00000039701	Usp53	AA939927|Phxr3|Sp6|mKIAA1350|mbo	ubiquitin specific peptidase 53	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34753097-2	chr2	34752597	34753597	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151469, intron 2 of 26)	B1_Mm|SINE|Alu	2135.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3935223-4	chr19	3934718	3935718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161428)	promoter-TSS (NM_001161428)	32.0	NM_001161428	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88283497-2	chr1	88282997	88283997	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-5918.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32712363-4	chr2	32711916	32712916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_037217)	TTS (NR_037217)	368.0	NM_130860	107951.0	Mm.27557	NM_130860	ENSMUSG00000009555	Cdk9	PITALRE	cyclin-dependent kinase 9 (CDC2-related kinase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89279667-4	chr3	89279174	89280174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010107)	promoter-TSS (NM_010107)	-29.0	NM_010107	13636.0	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69163301-4	chr3	69162786	69163786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVL-int|LTR|ERVL	32053.0	NR_126533	381452.0	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	9.5	20.5	11.0	15.0	31.5	17.0
Merged-chr12-102878520-4	chr12	102878025	102879025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172806)	promoter-TSS (NM_172806)	-119.0	NM_172806	238386.0	Mm.63456	NM_172806	ENSMUSG00000041702	Btbd7	5730507E09Rik|8030448M07|E130118E17Rik|FUP1|mKIAA1525	BTB (POZ) domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83044975-4	chr6	83044450	83045450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013586, intron 4 of 13)	intron (NM_013586, intron 4 of 13)	-4761.0	NR_106007	102465630.0		NR_106007	ENSMUSG00000099035	Mir7040	Gm27489|mmu-mir-7040	microRNA 7040	ncRNA	13.0	10.5	21.5	19.0	22.5	15.0
Merged-chr11-67052592-4	chr11	67052072	67053072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025510)	promoter-TSS (NM_025510)	46.0	NM_025510	66358.0	Mm.22511	NM_025510	ENSMUSG00000020910	Adprm	2310004I24Rik|MDS006	ADP-ribose/CDP-alcohol diphosphatase, manganese dependent	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180863409-2	chr1	180862909	180863909	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145943, intron 6 of 6)	B3|SINE|B2	12258.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80054102-2	chr10	80053602	80054602	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037741)	promoter-TSS (NM_001037741)	83.0	NM_001037741	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98787538-2	chr11	98787038	98788038	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7978.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46792868-4	chr8	46792351	46793351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	53106.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79214212-4	chr11	79213710	79214710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28814.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83430780-4	chr17	83430249	83431249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357886, intron 5 of 21)	intron (NM_001357886, intron 5 of 21)	79818.0	NM_001357886	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95215369-4	chr4	95214872	95215872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-163150.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	1.5	0.0	0.5	0.0	9.0	10.5
Merged-chr2-132600286-4	chr2	132599781	132600781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033469, intron 1 of 3)	intron (NR_033469, intron 1 of 3)	2085.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-18936405-4	chr8	18935911	18936911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176951, intron 6 of 6)	intron (NM_176951, intron 6 of 6)	14460.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-73769942-4	chr16	73769457	73770457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	572110.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	9.5	11.0	17.0	13.5	37.5	21.5
Merged-chr10-122679404-4	chr10	122678870	122679870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106182)	promoter-TSS (NR_106182)	55.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	64.0	116.0	73.0	61.5	97.0	94.0
Merged-chr17-83666774-4	chr17	83666263	83667263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34868.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36902028-4	chr15	36901532	36902532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105103.0	NM_001253806	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46690076-4	chr19	46689568	46690568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025563, exon 1 of 5)	exon (NM_025563, exon 1 of 5)	162.0	NM_025563	66439.0	Mm.87163	NM_025563	ENSMUSG00000062376	Borcs7	2010012O05Rik|4930569L17Rik|AI413851|AI467257	BLOC-1 related complex subunit 7	protein-coding	0.0	0.0	0.5	0.0	4.0	1.0
Merged-chr13-97974982-2	chr13	97974482	97975482	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_012026, intron 16 of 35)	intron (NM_012026, intron 16 of 35)	223870.0	NR_152263	111365222.0	Mm.440079	NR_152263		Eyelinc18	-	uncharacterized EyeLinc18	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140765011-4	chr5	140764514	140765514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 2 of 3)	PB1D10|SINE|Alu	40887.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132332992-4	chr1	132332489	132333489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028778, exon 7 of 7)	3' UTR (NM_028778, exon 7 of 7)	16864.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103206595-4	chr3	103206086	103207086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34931.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8443822-4	chr11	8443319	8444319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 27 of 30)	intron (NM_001083587, intron 27 of 30)	220716.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141455405-1	chr7	141454905	141455905	+	1000.0	f0_c57.idr	exon (NM_001163689, exon 1 of 9)	exon (NM_001163689, exon 1 of 9)	217.0	NM_001163689	66853.0	Mm.29998	NM_025802	ENSMUSG00000025509	Pnpla2	0610039C21Rik|1110001C14Rik|Atgl|TTS-2.2	patatin-like phospholipase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25395289-4	chr7	25394790	25395790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_073027, exon 2 of 6)	non-coding (NR_073027, exon 2 of 6)	577.0	NR_015569	654804.0	Mm.389841	NM_001039540	ENSMUSG00000053714	4732471J01Rik	-	RIKEN cDNA 4732471J01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136148059-1	chr4	136147559	136148559	+	1000.0	f0_balb.idr	Intergenic	CpG	4237.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	11.5	25.0	32.0	29.0	50.0	24.0
Merged-chr2-129570919-4	chr2	129570399	129571399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21940.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	46.5	91.0	67.0	15.0	49.5	36.5
Merged-chr5-140704902-4	chr5	140704407	140705407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276287)	promoter-TSS (NM_001276287)	-104.0	NM_181066	231841.0	Mm.271932	NM_172724	ENSMUSG00000000148	Brat1	AA881470|Baat1	BRCA1-associated ATM activator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36726583-4	chr5	36726068	36727068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22111.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	77.0	194.5	189.0	97.5	213.0	193.5
Merged-chr1-138244116-4	chr1	138243630	138244630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-29608.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133814191-4	chr4	133813684	133814684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	60547.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	50.5	94.0	59.0	41.0	110.0	77.5
Merged-chr16-59559742-4	chr16	59559224	59560224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3972.0	NM_174848	224273.0	Mm.246424	NM_174848	ENSMUSG00000022723	Crybg3	5031404N19|AU022790|Gm9581	beta-gamma crystallin domain containing 3	protein-coding	30.5	59.5	51.5	29.0	44.0	21.0
Merged-chr7-19667640-4	chr7	19667136	19668136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2606.0	NM_019649	56457.0	Mm.290960	NM_019649	ENSMUSG00000002981	Clptm1	HS9|N14	cleft lip and palate associated transmembrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163719424-4	chr2	163718924	163719924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 3 of 4)	intron (NM_001039390, intron 3 of 4)	25387.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	6.0	6.0	4.0	2.0	5.0	5.5
Merged-chr8-14884520-4	chr8	14884017	14885017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4019.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79446408-4	chr15	79445890	79446890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4247.0	NM_001359863	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	24.5	64.5	15.0	15.0	19.5	6.0
Merged-chr11-114684751-4	chr11	114684251	114685251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	9283.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103100560-2	chr11	103100060	103101060	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_152813, intron 1 of 14)	intron (NM_152813, intron 1 of 14)	1098.0	NM_152813	72469.0	Mm.264743	NM_152813	ENSMUSG00000020937	Plcd3	2610205J15Rik|mKIAA1964	phospholipase C, delta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110654157-4	chr9	110653664	110654664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183276)	promoter-TSS (NM_183276)	-3.0	NM_183276	235627.0	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-43546715-4	chr6	43546223	43547223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 4 of 8)	intron (NM_013861, intron 4 of 8)	104294.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-43266610-4	chr6	43266100	43267100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133674, intron 1 of 14)	intron (NM_133674, intron 1 of 14)	956.0	NM_133674	54324.0	Mm.320978	NM_133674	ENSMUSG00000033542	Arhgef5	2210412D05Rik|AA717842|AW495314|Tim1	Rho guanine nucleotide exchange factor (GEF) 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138237440-4	chr1	138236952	138237952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	-36286.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-105047110-2	chr13	105046610	105047610	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029879, intron 2 of 5)	intron (NM_029879, intron 2 of 5)	7820.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3185962-4	chr11	3185457	3186457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 4 of 32)	B1_Mur4|SINE|Alu	7506.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43471436-4	chr1	43470937	43471937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	25686.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-15214474-4	chr18	15213983	15214983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63037.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62506387-4	chr10	62505871	62506871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 2 of 3)	intron (NM_001358965, intron 2 of 3)	1386.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-34238145-4	chr15	34237639	34238639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_033521, exon 1 of 7)	5' UTR (NM_033521, exon 1 of 7)	113.0	NM_033521	114128.0	Mm.197518	NM_033521	ENSMUSG00000022257	Laptm4b	C330023P13Rik|LAPTM4beta	lysosomal-associated protein transmembrane 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75969146-4	chr15	75968635	75969635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347040)	promoter-TSS (NM_001347040)	12.0	NM_001081065	69020.0	Mm.294295	NM_001081065	ENSMUSG00000034429	Zfp707	1500031N24Rik|AI451708|AW495315	zinc finger protein 707	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29619615-4	chr2	29619072	29620072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039087)	promoter-TSS (NM_001039087)	-148.0	NM_054050	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25359803-4	chr10	25359322	25360322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358755)	promoter-TSS (NM_001358755)	24.0	NM_001358751	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83735470-2	chr11	83734970	83735970	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11470.0	NM_183249	66107.0	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-137881192-4	chr2	137880703	137881703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-375381.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167926253-4	chr2	167925756	167926756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-6071.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127511993-4	chr7	127511500	127512500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304266)	promoter-TSS (NM_001304266)	17.0	NM_001304266	100043597.0	Mm.428042	NM_175144	ENSMUSG00000053877	Srcap	B930091H02Rik|D030022P06Rik|F630004O05Rik	Snf2-related CREBBP activator protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146578233-3	chr6	146577700	146578700	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138757)	promoter-TSS (NM_138757)	289.0	NM_026218	67529.0	Mm.333499	NM_026218	ENSMUSG00000040242	Fgfr1op2	1500031J01Rik	FGFR1 oncogene partner 2	protein-coding	180.0	455.5	316.0	238.0	430.0	308.5
Merged-chr17-46646164-4	chr17	46645658	46646658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029091)	promoter-TSS (NM_029091)	-63.0	NM_001316742	27398.0	Mm.391007	NM_025302	ENSMUSG00000002767	Mrpl2	CGI-22|L2mt|MRP-L14|MRP-L2|Rpml14	mitochondrial ribosomal protein L2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17721344-4	chr16	17720830	17721830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285886, intron 1 of 16)	(CACCC)n|Simple_repeat|Simple_repeat	1570.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101083122-2	chr11	101082622	101083622	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001305982, exon 2 of 10)	exon (NM_001305982, exon 2 of 10)	557.0	NR_155015	71743.0	Mm.182271	NM_027896	ENSMUSG00000001755	Coasy	1300003G02Rik|Dpck|Ppat|Ukr1	Coenzyme A synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61093913-4	chr18	61093415	61094415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11657.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-15493453-4	chr9	15492947	15493947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359604)	promoter-TSS (NM_001359604)	15.0	NM_001359604	170748.0	Mm.86572	NM_133214	ENSMUSG00000058173	Smco4	Fn5	single-pass membrane protein with coiled-coil domains 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39835830-4	chr18	39835278	39836278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62281.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146819628-7	chr5	146819123	146820123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13267.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	80.0	172.5	146.5	67.5	165.5	140.0
Merged-chr2-73486468-4	chr2	73485959	73486959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289723)	promoter-TSS (NM_001289723)	-706.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4677454-4	chr8	4676976	4677976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	64306.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-33794840-4	chr18	33794349	33795349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038151)	promoter-TSS (NR_038151)	-43.0	NR_038152	69749.0	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	73.5	174.5	139.0	55.0	128.5	110.5
Merged-chr8-111243778-4	chr8	111243274	111244274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 1 of 25)	intron (NM_009149, intron 1 of 25)	15428.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126556941-4	chr4	126556436	126557436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175554)	promoter-TSS (NM_175554)	-44.0	NM_175554	269582.0	Mm.243962	NM_175554	ENSMUSG00000042489	Clspn	B130025E01|C85083|E130314M08Rik	claspin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97830684-4	chr11	97830192	97831192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010688, intron 4 of 6)	intron (NM_010688, intron 4 of 6)	-10088.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	30.0	57.0	67.5	24.5	71.0	36.5
Merged-chr5-5232724-4	chr5	5232233	5233233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 3 of 14)	L1_Mur3|LINE|L1	33335.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	1.0	3.0	0.0	9.5	0.5	1.5
Merged-chr8-22136736-3	chr8	22136215	22137215	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011848, intron 11 of 15)	RLTR44B|LTR|ERVK	-11648.0	NM_001347318	330721.0	Mm.113940	NM_177898	ENSMUSG00000037738	Nek5	6530411J22|BB049667	NIMA (never in mitosis gene a)-related expressed kinase 5	protein-coding	0.0	0.0	3.0	52.5	91.0	66.0
Merged-chr11-51925342-2	chr11	51924842	51925842	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42289.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103027025-4	chr11	103026517	103027517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1526.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70836440-1	chr8	70835940	70836940	+	1000.0	f1_c57bl6.idr	intron (NM_027560, intron 6 of 7)	intron (NM_027560, intron 6 of 7)	3280.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	1.0	1.0	3.5	2.0	0.0	5.0
Merged-chr10-67185695-4	chr10	67185189	67186189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001242396)	promoter-TSS (NM_001242396)	-61.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-42382269-4	chr6	42381801	42382801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9033.0	NM_023580	13835.0	Mm.133330	NM_023580	ENSMUSG00000029859	Epha1	5730453L17Rik|AL033318|Eph|Esk	Eph receptor A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-65112140-4	chr13	65111655	65112655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083901, intron 2 of 12)	intron (NM_001083901, intron 2 of 12)	827.0	NM_001083901	66631.0	Mm.239196	NM_133680	ENSMUSG00000038212	Mfsd14b	5730414C17Rik|AU045608|AW539692|Hiatl1	major facilitator superfamily domain containing 14B	protein-coding	110.0	227.5	162.5	94.5	265.5	198.0
Merged-chr4-145276756-4	chr4	145276248	145277248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009401, intron 11 of 12)	intron (NM_009401, intron 11 of 12)	-29878.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80232770-4	chr7	80232255	80233255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011870)	promoter-TSS (NM_011870)	50.0	NM_001291276	23991.0	Mm.30217	NM_011870	ENSMUSG00000030538	Cib1	Cibkip|Kip|Prkdcip	calcium and integrin binding 1 (calmyrin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-85223370-3	chr13	85222874	85223874	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145452, intron 20 of 24)	intron (NM_145452, intron 20 of 24)	33989.0	NM_023243	66671.0	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	9.5	17.5	12.0	25.5	46.0	32.5
Merged-chr11-115639144-4	chr11	115638638	115639638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10843.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5348990-4	chr18	5348502	5349502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14195.0	NM_001360447	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	0.0	0.0	0.5	1.5	0.0	0.5
Merged-chr8-56292499-4	chr8	56291921	56292921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2131.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	22.5	35.0	31.5	17.5	49.0	30.0
Merged-chr11-119354194-1	chr11	119353694	119354694	+	1000.0	f1_balb.idr	intron (NM_018822, intron 1 of 7)	intron (NM_018822, intron 1 of 7)	1316.0	NM_018822	27029.0	Mm.103788	NM_018822	ENSMUSG00000005043	Sgsh	4632406A19Rik	N-sulfoglucosamine sulfohydrolase (sulfamidase)	protein-coding	9.5	24.0	23.5	7.0	14.5	17.5
Merged-chr11-4261311-4	chr11	4260818	4261818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008501, intron 1 of 3)	intron (NM_008501, intron 1 of 3)	3750.0	NM_008501	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46305661-4	chr19	46305171	46306171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177370)	promoter-TSS (NM_001177370)	-24.0	NM_019408	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	32.5	89.0	43.0	17.0	59.0	28.0
Merged-chr9-48422499-4	chr9	48421993	48422993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31851.0	NR_026561	667933.0	Mm.491076	NR_026561		Gm8884	EG667933	predicted gene 8884	ncRNA	55.5	155.0	108.0	34.0	90.0	33.5
Merged-chr17-35861466-7	chr17	35860920	35861920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_134122, exon 1 of 4)	exon (NM_134122, exon 1 of 4)	102.0	NM_134122	106582.0	Mm.390992	NM_134122	ENSMUSG00000059791	Nrm	2610307M02Rik|AI429796	nurim (nuclear envelope membrane protein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167630630-2	chr2	167630130	167631130	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311131, intron 1 of 4)	intron (NM_001311131, intron 1 of 4)	1375.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33770085-4	chr16	33769612	33770612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23925.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101675846-4	chr4	101675354	101676354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28071.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	1.5	21.0	15.0	18.5	13.5	8.5
Merged-chr15-73017829-4	chr15	73017331	73018331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029640, intron 6 of 21)	intron (NM_029640, intron 6 of 21)	37981.0	NM_029640	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127211153-2	chr10	127210653	127211653	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359280, intron 1 of 10)	intron (NM_001359280, intron 1 of 10)	469.0	NM_054097	117150.0	Mm.22682	NM_054097	ENSMUSG00000025417	Pip4k2c	Pip5k2c	phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-67780154-4	chr13	67779651	67780651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028402, intron 1 of 3)	intron (NM_028402, intron 1 of 3)	458.0	NM_028402	72958.0	Mm.53849	NM_028402	ENSMUSG00000090659	Zfp493	2900054J07Rik|Rslcan12	zinc finger protein 493	protein-coding	17.5	94.0	80.5	12.0	25.5	66.0
Merged-chr13-55693015-4	chr13	55692483	55693483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181278)	promoter-TSS (NM_181278)	-141.0	NM_181278	78521.0	Mm.28449	NM_181278	ENSMUSG00000045767	B230219D22Rik	AA119856|D530037I19Rik	RIKEN cDNA B230219D22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118883530-4	chr10	118883070	118884070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-14667.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	6.0	15.5	9.5	7.5	8.0	11.5
Merged-chr6-72142246-2	chr6	72141746	72142746	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011375, exon 4 of 7)	exon (NM_011375, exon 4 of 7)	-19049.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45053836-2	chr7	45053339	45054339	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175022)	promoter-TSS (NM_175022)	-958.0	NM_175022	233210.0	Mm.219137	NM_175022	ENSMUSG00000046574	Prr12	6720469B10|BC058674	proline rich 12	protein-coding	39.0	67.5	58.5	41.5	114.0	59.0
Merged-chr19-6085729-4	chr19	6085224	6086224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024231)	promoter-TSS (NM_024231)	627.0	NM_026410	67849.0	Mm.23526	NM_026410	ENSMUSG00000024791	Cdca5	2610036L13Rik|AL024086|AW536684|C85404	cell division cycle associated 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106152515-2	chr8	106152015	106153015	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357319, intron 1 of 5)	B1_Mus1|SINE|Alu	2161.0	NM_001357319	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48316124-4	chr17	48315640	48316640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177083)	promoter-TSS (NM_177083)	-22.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142449357-4	chr7	142448857	142449857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	6889.0	NM_009405	21953.0	Mm.39469	NM_009405	ENSMUSG00000031097	Tnni2	-	troponin I, skeletal, fast 2	protein-coding	5.0	28.0	5.5	1.5	4.0	0.0
Merged-chr14-25740457-2	chr14	25739957	25740957	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 2 of 3)	intron (NM_001101433, intron 2 of 3)	28399.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	3.0	0.0	0.0	3.5	2.5	0.5
Merged-chr17-33818205-2	chr17	33817679	33818679	+	1000.0	f0_balb.idr|f1_balb.idr	exon (NM_030697, exon 3 of 11)	exon (NM_030697, exon 3 of 11)	6383.0	NM_016844	54127.0	Mm.352374	NM_016844	ENSMUSG00000067288	Rps28	-	ribosomal protein S28	protein-coding	14.5	20.5	27.5	7.5	10.0	24.5
Merged-chr19-10843682-4	chr19	10843161	10844161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023044, intron 1 of 7)	MIR3|SINE|MIR	1117.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89421720-4	chr6	89421228	89422228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 4 of 6)	intron (NM_001167736, intron 4 of 6)	-59115.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57824579-4	chr6	57824090	57825090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 1 of 4)	CpG	535.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-89552649-4	chr1	89552160	89553160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	97849.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107479429-4	chr11	107478943	107479943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025894)	promoter-TSS (NM_025894)	-85.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4877023-4	chr7	4876523	4877523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001101598)	promoter-TSS (NM_001101598)	-30.0	NM_001101598	664994.0	Mm.302624	NM_001101598	ENSMUSG00000086784	Isoc2a	Isoc2	isochorismatase domain containing 2a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96880563-4	chr11	96880093	96881093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	30200.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	59.0	156.5	114.0	16.5	59.5	44.0
Merged-chr19-29462662-4	chr19	29462140	29463140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	ORR1E|LTR|ERVL-MaLR	51721.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65537159-4	chr5	65536656	65537656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310618)	promoter-TSS (NM_001310618)	-89.0	NM_016786	53323.0	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120513023-4	chr5	120512511	120513511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 1 of 13)	intron (NM_001177595, intron 1 of 13)	1819.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125445476-4	chr6	125444963	125445963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR85a|LTR|Gypsy?	49297.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	8.0	22.0	26.5	8.5	13.0	19.5
Merged-chr3-119783134-6	chr3	119782714	119783714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019550, exon 1 of 14)	5' UTR (NM_019550, exon 1 of 14)	174.0	NM_001310711	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	4.0	6.0	8.0	1.0	6.5	8.0
Merged-chr9-121277736-4	chr9	121277234	121278234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177589)	promoter-TSS (NM_177589)	-562.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	1.0	3.5	10.5	0.0	18.0	1.5
Merged-chr12-70968634-4	chr12	70968156	70969156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5967.0	NM_001310595	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76430577-2	chr15	76430077	76431077	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162489, intron 21 of 30)	ORR1F|LTR|ERVL-MaLR	-2637.0	NR_105919	102465576.0		NR_105919	ENSMUSG00000099260	Mir6954	Gm27770|mmu-mir-6954	microRNA 6954	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-73177110-4	chr11	73176609	73177609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025318)	promoter-TSS (NM_025318)	26.0	NM_029564	76281.0	Mm.371656	NM_029564	ENSMUSG00000040158	Tax1bp3	1300011C24Rik|TIP-1	Tax1 (human T cell leukemia virus type I) binding protein 3	protein-coding	7.5	8.5	10.5	9.0	18.5	10.5
Merged-chr4-136148714-7	chr4	136148204	136149204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4882.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-19894779-4	chr4	19894288	19895288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175406, intron 2 of 7)	L1MC3|LINE|L1	27778.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64780980-4	chr5	64780476	64781476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22547.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27232535-4	chr2	27232035	27233035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138665, intron 8 of 20)	intron (NM_138665, intron 8 of 20)	14768.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16273481-4	chr7	16272977	16273977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001136471)	TTS (NM_001136471)	215.0	NM_001136270	66300.0	Mm.218698	NM_001136270	ENSMUSG00000091811	Inafm1	2610014I16Rik|Prr24	InaF motif containing 1	protein-coding	0.5	0.0	2.0	6.0	3.0	1.0
Merged-chr10-21636872-4	chr10	21636372	21637372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43727.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111246487-2	chr8	111245987	111246987	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 1 of 25)	intron (NM_009149, intron 1 of 25)	12715.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-125458708-4	chr1	125458201	125459201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22974.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-68655861-4	chr14	68655373	68656373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183366)	promoter-TSS (NM_183366)	-31.0	NM_183366	13522.0	Mm.117450	NM_010082	ENSMUSG00000014725	Adam28	C130072N01Rik|D430033C21Rik|Dtgn1|MDC-L|MDCL|TECADAM|eMDCII	a disintegrin and metallopeptidase domain 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-33673836-4	chr8	33673338	33674338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010344, intron 4 of 12)	intron (NM_010344, intron 4 of 12)	20600.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	153.0	263.5	203.5	20.5	65.5	51.5
Merged-chr12-84195344-4	chr12	84194844	84195844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	-1329.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110708856-2	chr9	110708356	110709356	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 3 of 6)	intron (NM_028312, intron 3 of 6)	33754.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116156771-3	chr9	116156266	116157266	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	18597.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	62.5	61.5	81.0	157.5	270.5	209.0
Merged-chr6-136828853-2	chr6	136828353	136829353	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178776)	promoter-TSS (NM_178776)	10.0	NM_178776	320135.0	Mm.386899	NM_178776	ENSMUSG00000047515	BC049715	-	cDNA sequence BC049715	protein-coding	77.0	248.0	146.0	103.0	277.5	171.0
Merged-chr2-30177958-2	chr2	30177458	30178458	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172660, exon 2 of 12)	exon (NM_172660, exon 2 of 12)	501.0	NM_172660	227695.0	Mm.4449	NM_172660	ENSMUSG00000039660	Spout1	9930028P05|AL033358|CENP-32|D2Wsu81e	SPOUT domain containing methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121228771-2	chr11	121228245	121229245	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001252549, intron 1 of 6)	intron (NM_001252549, intron 1 of 6)	195.0	NM_001254735	217370.0	Mm.27182	NM_144832	ENSMUSG00000039294	BC017643	-	cDNA sequence BC017643	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47295946-4	chr17	47295413	47296413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 5 of 19)	intron (NM_001097623, intron 5 of 19)	65683.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71005743-1	chr17	71005243	71006243	+	1000.0	f1_c57bl6.idr	Intergenic	RMER12|LTR|ERVK	-3210.0	NM_026064	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	2.5	3.0	0.0	2.5	0.0	0.0
Merged-chr16-75961255-4	chr16	75960748	75961748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39536.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102572264-4	chr4	102571765	102572765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	2205.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	9.0	49.5	19.5	17.5	60.0	35.0
Merged-chr15-8643280-3	chr15	8642752	8643752	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148938, intron 6 of 9)	(A)n|Simple_repeat|Simple_repeat	67555.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-144939805-4	chr7	144939309	144940309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007631, exon 1 of 5)	5' UTR (NM_007631, exon 1 of 5)	116.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	22.5	56.5	36.5	19.5	32.0	20.5
Merged-chr13-65241041-4	chr13	65240576	65241576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-35360.0	NM_175290	97895.0	Mm.315815	NM_175290	ENSMUSG00000032999	Nlrp4f	C330026N02Rik|C86045|Nalp-kappa|Nalp4f	NLR family, pyrin domain containing 4F	protein-coding	42.5	128.0	102.0	38.0	116.5	92.0
Merged-chr19-5924124-4	chr19	5923671	5924671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026772, intron 1 of 1)	intron (NM_026772, intron 1 of 1)	645.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34267543-4	chr10	34267052	34268052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14638.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-43106062-4	chr9	43105565	43106565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027144)	promoter-TSS (NM_027144)	-347.0	NM_027144	69632.0	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	30.5	47.0	61.5	38.0	70.0	54.5
Merged-chr14-24490656-4	chr14	24490151	24491151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207635)	promoter-TSS (NM_207635)	-27.0	NM_207635	20088.0	Mm.16775	NM_011297	ENSMUSG00000025290	Rps24	-	ribosomal protein S24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12916275-4	chr17	12915776	12916776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013686)	promoter-TSS (NM_013686)	-53.0	NM_001290712	21454.0	Mm.229342	NM_013686	ENSMUSG00000068039	Tcp1	AI528772|CCT|Cct1|Ccta|TRic|Tcp-1|Tp63|c-cpn|p63	t-complex protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-53839887-4	chr1	53839354	53840354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 22 of 28)	intron (NM_001001883, intron 22 of 28)	-9570.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	42.0	54.5	43.0	24.0	82.0	38.0
Merged-chr14-79390721-4	chr14	79390220	79391220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025832)	promoter-TSS (NM_025832)	-52.0	NM_025832	66897.0	Mm.24425	NM_025832	ENSMUSG00000022020	Naa16	1300019C06Rik|Narg1l	N(alpha)-acetyltransferase 16, NatA auxiliary subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155223270-4	chr4	155222751	155223751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011385)	promoter-TSS (NM_011385)	-716.0	NM_001357191	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-19929310-4	chr11	19928812	19929812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	4870.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191098381-4	chr1	191097877	191098877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030060)	promoter-TSS (NM_030060)	-37.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	25.0	49.0	25.0	28.5	52.5	31.5
Merged-chr15-86206629-4	chr15	86206122	86207122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7837.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167422678-2	chr2	167422178	167423178	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304542, intron 1 of 15)	intron (NM_001304542, intron 1 of 15)	968.0	NM_001304542	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80782433-4	chr7	80781957	80782957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	20874.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	106.0	132.5	65.0	87.0	158.0	102.0
Merged-chr8-41218072-3	chr8	41217595	41218595	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B3A_MM|LTR|ERVK	-2939.0	NM_145594	234199.0	Mm.277955	NM_145594	ENSMUSG00000031594	Fgl1	Mfire1	fibrinogen-like protein 1	protein-coding	16.0	51.5	25.5	6.5	13.5	4.5
Merged-chr2-27515152-4	chr2	27514607	27515607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080848)	promoter-TSS (NM_080848)	-40.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148739338-4	chr5	148738829	148739829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2511.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91612085-2	chr16	91611585	91612585	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6914.0	NM_001099738	246738.0	Mm.101927	NM_138664	ENSMUSG00000039763	Dnajc28	BC020175|ORF28	DnaJ heat shock protein family (Hsp40) member C28	protein-coding	8.5	39.5	17.5	1.0	17.5	8.0
Merged-chr2-145740894-4	chr2	145740408	145741408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 3 of 3)	L3|LINE|CR1	39713.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9642241-4	chr4	9641748	9642748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	1469.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	21.5	31.0	34.0	15.5	31.0	32.0
Merged-chr14-47473096-4	chr14	47472580	47473580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030236, intron 1 of 1)	CpG	519.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	38.5	85.0	81.0	24.0	83.5	57.5
Merged-chr14-76152265-3	chr14	76151768	76152768	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41377.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46503623-8	chr19	46503188	46504188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	2040.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	15.5	31.0	27.5	18.5	36.0	22.0
Merged-chr4-152039333-4	chr4	152038828	152039828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028727)	promoter-TSS (NM_028727)	7.0	NM_028727	74035.0	Mm.275803	NM_028727	ENSMUSG00000028948	Nol9	4632412I24Rik|6030462G04Rik|AI449622|AW490720	nucleolar protein 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26464170-2	chr17	26463699	26464699	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44273.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	43.0	86.5	73.0	10.5	15.0	38.5
Merged-chr18-62192230-4	chr18	62191738	62192738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12138.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	16.0	60.5	62.0	42.0	87.0	45.0
Merged-chr2-172398184-4	chr2	172397680	172398680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080820, intron 1 of 6)	intron (NM_001080820, intron 1 of 6)	4386.0	NM_001276423	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95521399-4	chr3	95520884	95521884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5402.0	NM_021281	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	10.0	65.5	33.5	3.5	55.0	21.0
Merged-chr18-60729312-4	chr18	60728806	60729806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	-1740.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	2.5	9.0	3.0	4.5	25.5	14.0
Merged-chr2-117404722-4	chr2	117404231	117405231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61854.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59736210-4	chr10	59735721	59736721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359267, intron 3 of 11)	intron (NM_001359267, intron 3 of 11)	33658.0	NM_001291443	216001.0	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41911799-4	chr19	41911301	41912301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023418)	promoter-TSS (NM_023418)	-70.0	NM_023418	18648.0	Mm.16783	NM_023418	ENSMUSG00000011752	Pgam1	2310050F24Rik|Pgam-1	phosphoglycerate mutase 1	protein-coding	34.0	41.5	31.0	29.0	64.0	23.5
Merged-chr17-86151100-4	chr17	86150601	86151601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5926.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	1.5	5.0	0.0	0.0	0.5	0.0
Merged-chr2-145834245-2	chr2	145833745	145834745	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	48129.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116087045-4	chr11	116086550	116087550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347642)	promoter-TSS (NM_001347642)	-55.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35200630-4	chr17	35200121	35201121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001278601, intron 2 of 2)	intron (NM_001278601, intron 2 of 2)	1386.0	NM_013693	21926.0	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	32.5	106.0	71.0	29.0	134.0	77.0
Merged-chr17-47523571-4	chr17	47523061	47524061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	18510.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-133545187-4	chr3	133544687	133545687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346736)	promoter-TSS (NM_001346736)	-797.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-124423186-4	chr9	124422685	124423685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027950)	promoter-TSS (NR_027950)	-66.0	NR_027950	75135.0	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19107680-2	chr10	19107180	19108180	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34069.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	4.0	6.5	15.0	17.5	17.0	9.5
Merged-chr6-82714418-4	chr6	82713913	82714913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60041.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95940643-4	chr10	95940118	95941118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001932)	promoter-TSS (NM_001001932)	-45.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7868992-4	chr9	7868472	7869472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007464, intron 1 of 8)	intron (NM_007464, intron 1 of 8)	4198.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72559774-4	chr5	72559280	72560280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133921)	promoter-TSS (NM_133921)	-135.0	NM_133921	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9915241-2	chr19	9914741	9915741	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-15708.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	40.5	65.5	48.5	30.5	73.0	45.5
Merged-chr5-65860836-4	chr5	65860322	65861322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2747.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	22.0	36.5	9.5	15.5	7.0	24.5
Merged-chr11-120190024-4	chr11	120189488	120190488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030682)	promoter-TSS (NR_030682)	-132.0	NR_030682	100042332.0	Mm.269766	NR_030682		2810410L24Rik	-	RIKEN cDNA 2810410L24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57096281-4	chr17	57095770	57096770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033508, intron 3 of 3)	intron (NR_033508, intron 3 of 3)	-8488.0	NM_009451	22153.0	Mm.7420	NM_009451	ENSMUSG00000062591	Tubb4a	AI325297|M(beta)4|Tubb|Tubb4	tubulin, beta 4A class IVA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102624323-4	chr4	102623851	102624851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34508.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	86.0	176.5	111.5	71.0	135.0	94.0
Merged-chr9-75432934-4	chr9	75432442	75433442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8582.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	0.0	5.5	0.5	0.0	2.0	0.0
Merged-chr6-114781688-2	chr6	114781188	114782188	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	138591.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148851400-4	chr2	148850905	148851905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029960)	promoter-TSS (NM_029960)	-471.0	NM_029960	77705.0	Mm.159975	NM_029960	ENSMUSG00000027446	9230104L09Rik	mCST E2	RIKEN cDNA 9230104L09 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91237100-4	chr2	91236601	91237601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015464)	promoter-TSS (NR_015464)	-35.0	NM_028119	107986.0	Mm.389334	NM_028119	ENSMUSG00000002109	Ddb2	2610043A19Rik	damage specific DNA binding protein 2	protein-coding	43.5	62.5	37.0	31.0	119.0	62.0
Merged-chr3-58416039-3	chr3	58415520	58416520	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081229, exon 1 of 4)	exon (NM_001081229, exon 1 of 4)	1300.0	NM_001347233	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-62627721-4	chr17	62627204	62628204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010109, intron 2 of 3)	intron (NM_010109, intron 2 of 3)	253613.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106162762-4	chr1	106162237	106163237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040630, intron 2 of 2)	B3A|SINE|B2	8787.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28170522-2	chr7	28170022	28171022	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007991, intron 1 of 8)	intron (NM_007991, intron 1 of 8)	774.0	NM_007991	14113.0	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124745637-4	chr6	124745142	124746142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007881, exon 6 of 10)	exon (NM_007881, exon 6 of 10)	-4563.0	NM_013535	14790.0	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102382423-4	chr12	102381925	102382925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 7 of 9)	intron (NM_177620, intron 7 of 9)	57388.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-163779584-4	chr1	163779090	163780090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010629)	promoter-TSS (NM_010629)	7.0	NM_010629	16579.0	Mm.4651	NM_010629	ENSMUSG00000026585	Kifap3	KAP-3|KAP3|SMAP	kinesin-associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123065461-4	chr8	123064960	123065960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153176)	promoter-TSS (NM_153176)	-48.0	NM_153176	234847.0	Mm.292075	NM_153176	ENSMUSG00000000738	Spg7	AI452278|AU015315|Cmar|PGN	SPG7, paraplegin matrix AAA peptidase subunit	protein-coding	21.0	62.5	43.0	24.0	79.0	48.0
Merged-chr1-152807801-4	chr1	152807273	152808273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010877, exon 2 of 16)	5' UTR (NM_010877, exon 2 of 16)	7620.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96399623-4	chr9	96399107	96400107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35176.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	3.5	26.0	5.0	4.5	11.5	14.5
Merged-chr1-167349992-4	chr1	167349510	167350510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019993)	promoter-TSS (NM_019993)	19.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98709282-4	chr11	98708779	98709779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361995, intron 19 of 25)	intron (NM_001361995, intron 19 of 25)	7966.0	NM_009971	12985.0	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191201414-4	chr1	191200916	191201916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18083.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24758564-4	chr13	24758108	24759108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020567, intron 2 of 6)	MTD|LTR|ERVL-MaLR	3329.0	NM_020567	57441.0	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32533199-4	chr11	32532690	32533690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359177)	promoter-TSS (NM_001359177)	-76.0	NM_001359178	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4353005-4	chr18	4352498	4353498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040328)	promoter-TSS (NR_040328)	-45.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52763218-4	chr2	52762763	52763763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-21114.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94356949-4	chr10	94356473	94357473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	45024.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120548407-2	chr11	120547907	120548907	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033231, intron 1 of 4)	intron (NM_001033231, intron 1 of 4)	1320.0	NM_001033231	192173.0	Mm.262300	NM_001033231	ENSMUSG00000061111	Mcrip1	Fam195b	MAPK regulated corepressor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25968993-2	chr8	25968447	25969447	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029884, intron 4 of 17)	L1MC4a|LINE|L1	7797.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	68.5	91.0	45.0	19.5	36.0	32.0
Merged-chr11-60878882-4	chr11	60878400	60879400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001168507, exon 1 of 3)	5' UTR (NM_001168507, exon 1 of 3)	138.0	NM_173453	216821.0	Mm.28063	NM_173453	ENSMUSG00000043284	Tmem11	5730466P16Rik|AA409091	transmembrane protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-22801542-4	chr14	22801045	22802045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-258747.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94677464-4	chr11	94676957	94677957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145828)	promoter-TSS (NM_145828)	36.0	NM_145828	217119.0	Mm.100638	NM_145828	ENSMUSG00000020868	Xylt2	E030002B02Rik|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33947542-4	chr17	33947056	33948056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020603, intron 10 of 14)	intron (NM_020603, intron 10 of 14)	3932.0	NM_019420	54218.0	Mm.11132	NM_019420	ENSMUSG00000067370	B3galt4	Gal-T2|Galt2	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4	protein-coding	49.5	58.0	51.5	21.0	68.0	39.5
Merged-chr6-100214765-4	chr6	100214263	100215263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	72595.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155624810-4	chr4	155624335	155625335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040441)	promoter-TSS (NR_040441)	-19.0	NM_001347308	12537.0	Mm.267410	NM_007661	ENSMUSG00000029062	Cdk11b	AA989746|CDK11-p110|CDK11-p46|CDK11-p58|Cdc11b|Cdc2l1|Cdc2l2|Cdk11|p58	cyclin-dependent kinase 11B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70395272-4	chr14	70394754	70395754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021308, intron 15 of 22)	intron (NM_021308, intron 15 of 22)	33840.0	NM_021308	57746.0	Mm.85253	NM_021308	ENSMUSG00000033644	Piwil2	Piwil1l|mili	piwi-like RNA-mediated gene silencing 2	protein-coding	0.0	1.0	0.0	3.5	8.5	12.5
Merged-chr5-140379399-4	chr5	140378901	140379901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172277, intron 1 of 10)	intron (NM_172277, intron 1 of 10)	9907.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100939556-4	chr11	100939063	100940063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011486)	promoter-TSS (NM_011486)	-23.0	NM_011486	20848.0	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-19713243-4	chr14	19712731	19713731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-38026.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118820068-4	chr10	118819575	118820575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48828.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-76345375-4	chr10	76344880	76345880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081419)	promoter-TSS (NM_001081419)	-89.0	NM_001081419	64451.0	Mm.33183	NM_001081419	ENSMUSG00000020231	Dip2a	4931420H10Rik|AI426328|Dip2|Kiaa0184-hp|mKIAA0184	disco interacting protein 2 homolog A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60818749-2	chr2	60818249	60819249	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	62689.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135942370-4	chr4	135941884	135942884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-4064.0	NM_008254	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-63119903-4	chr1	63119412	63120412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045914, intron 1 of 3)	intron (NR_045914, intron 1 of 3)	5172.0	NR_045914	100380944.0	Mm.392955	NR_045914	ENSMUSG00000084799	Ino80dos	Gm11602	INO80 complex subunit D, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-85451974-4	chr6	85451473	85452473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163427)	promoter-TSS (NM_001163427)	-3.0	NR_028081	73327.0	Mm.379221	NM_028505	ENSMUSG00000030008	Pradc1	1700040I03Rik|Pap21	protease-associated domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102019510-4	chr7	102019037	102020037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001360748, exon 9 of 9)	3' UTR (NM_001360748, exon 9 of 9)	-1382.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40477075-4	chr10	40476576	40477576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198164, intron 10 of 11)	intron (NM_198164, intron 10 of 11)	-93286.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155417025-3	chr1	155416524	155417524	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011273, intron 1 of 14)	CpG	420.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35267812-4	chr9	35267369	35268369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175411)	promoter-TSS (NM_175411)	-12.0	NM_028040	71989.0	Mm.273515	NM_028040	ENSMUSG00000032044	Rpusd4	2410001E19Rik	RNA pseudouridylate synthase domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-23844165-4	chr5	23843672	23844672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025394)	promoter-TSS (NM_025394)	-27.0	NM_025394	66169.0	Mm.291868	NM_025394	ENSMUSG00000028998	Tomm7	1110020J08Rik|AW047273|Tom7	translocase of outer mitochondrial membrane 7	protein-coding	75.5	123.5	133.0	46.0	71.5	46.5
Merged-chr10-127600928-1	chr10	127600428	127601428	+	1000.0	f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	20220.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	21.0	52.0	22.0	4.0	29.0	33.5
Merged-chr12-33045850-4	chr12	33045348	33046348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024478, intron 13 of 19)	intron (NM_001024478, intron 13 of 19)	47027.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	4.0	7.0	7.0	2.0	5.5	3.5
Merged-chr7-19462084-2	chr7	19461584	19462584	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3590.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	14.5	59.5	23.0	12.0	59.5	23.0
Merged-chr7-4080724-4	chr7	4080212	4081212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033568, intron 6 of 8)	intron (NR_033568, intron 6 of 8)	-17508.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85143447-1	chr8	85142947	85143947	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-8477.0	NM_001037922	624855.0	Mm.390061	NM_001037922	ENSMUSG00000062687	Cks1brt	EG624855|Gm6531	CDC28 protein kinase 1b, retrogene	protein-coding	30.0	53.0	48.5	35.0	53.0	33.0
Merged-chr17-34972673-2	chr17	34972160	34973160	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_013558)	promoter-TSS (NM_013558)	-43.0	NM_013558	15482.0	Mm.14287	NM_013558	ENSMUSG00000007033	Hspa1l	Hsc70t|Msh5	heat shock protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51480567-4	chr10	51480063	51481063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291893)	promoter-TSS (NM_001291893)	-49.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166085178-2	chr2	166084678	166085678	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252579, intron 8 of 20)	intron (NM_001252579, intron 8 of 20)	70107.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.0	0.0	0.5	0.0	0.0	1.0
Merged-chr7-75455518-4	chr7	75455018	75456018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029332)	promoter-TSS (NM_029332)	-16.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	2.5	12.0	23.0	9.0	24.5	15.5
Merged-chr5-44227125-4	chr5	44226621	44227621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173764)	promoter-TSS (NM_173764)	-515.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-126905782-4	chr10	126905300	126906300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4429.0	NM_001358970	68876.0	Mm.276769	NM_026858	ENSMUSG00000025436	Atp23	1110068E08Rik|2410012H02Rik|Xrcc6bp1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-95314048-4	chr1	95313541	95314541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026321, exon 1 of 3)	exon (NM_026321, exon 1 of 3)	413.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-128590975-4	chr1	128590538	128591538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356509, intron 1 of 1)	CpG	1261.0	NM_009911	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	25.5	76.5	60.0	35.5	77.5	48.5
Merged-chr13-48968320-4	chr13	48967819	48968819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033268)	promoter-TSS (NM_001033268)	207.0	NR_015601	68128.0	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126735495-2	chr4	126734995	126735995	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_198960, exon 2 of 7)	exon (NM_198960, exon 2 of 7)	774.0	NM_198960	332937.0	Mm.331881	NM_198960	ENSMUSG00000042477	Tfap2e	AI505200|AP-2e|Tcfap2e	transcription factor AP-2, epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91712550-2	chr2	91712088	91713088	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001356519, exon 1 of 2)	exon (NM_001356519, exon 1 of 2)	508.0	NM_001356519	241547.0	Mm.130331	NM_178724	ENSMUSG00000027243	Harbi1	D230010M03Rik	harbinger transposase derived 1	protein-coding	2.5	0.0	1.0	0.0	3.5	3.0
Merged-chr9-50533523-4	chr9	50533019	50534019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133217, exon 12 of 12)	exon (NM_133217, exon 12 of 12)	-4878.0	NM_011220	19286.0	Mm.35856	NM_011220	ENSMUSG00000032067	Pts	PTPS	6-pyruvoyl-tetrahydropterin synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50698669-1	chr15	50698169	50699169	+	1000.0	f0_balb.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	190380.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	6.5	1.5	1.5	13.5	6.5	9.5
Merged-chr17-35202069-4	chr17	35201578	35202578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001278601)	promoter-TSS (NM_001278601)	-71.0	NM_001278601	21926.0	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	19.0	31.0	27.0	6.5	37.5	26.0
Merged-chr5-125273867-4	chr5	125273318	125274318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	67276.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	1.5	5.5	6.0	0.0	4.0	3.0
Merged-chr2-11603228-4	chr2	11602712	11603712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152824)	promoter-TSS (NM_152824)	-13.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106739897-2	chr11	106739397	106740397	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-11329.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44660006-4	chr13	44659518	44660518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70756.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-67637782-4	chr13	67637283	67638283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183146)	promoter-TSS (NM_183146)	-30.0	NM_183146	212281.0	Mm.342918	NM_183146	ENSMUSG00000021510	Zfp729a	A530054K11Rik|Rslcan3	zinc finger protein 729a	protein-coding	141.5	295.5	265.5	147.0	332.5	279.0
Merged-chr7-16052958-4	chr7	16052478	16053478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-18867.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	13.0	32.5	43.5	28.0	42.5	31.0
Merged-chr5-145083810-4	chr5	145083318	145084318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019767)	promoter-TSS (NM_019767)	-51.0	NM_019767	56443.0	Mm.371610	NM_019767	ENSMUSG00000029621	Arpc1a	0610010H08Rik|1110030K07Rik|41kDa|AA407347|Sid32|Sid329	actin related protein 2/3 complex, subunit 1A	protein-coding	37.5	103.0	62.5	27.5	43.5	49.5
Merged-chr19-4170744-2	chr19	4170244	4171244	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134148, intron 7 of 9)	intron (NM_134148, intron 7 of 9)	4735.0	NM_134148	107239.0	Mm.482310	NM_134148	ENSMUSG00000075289	Carns1	AI790298|Atpgd1|mKIAA1394	carnosine synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101665524-4	chr11	101665020	101666020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025404)	promoter-TSS (NM_025404)	-21.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66308308-2	chr7	66307808	66308808	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 7 of 33)	intron (NM_146191, intron 7 of 33)	73416.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32163446-3	chr18	32162952	32163952	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011946, exon 1 of 17)	5' UTR (NM_011946, exon 1 of 17)	363.0	NM_011946	26405.0	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119983202-4	chr9	119982709	119983709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357560)	promoter-TSS (NM_001357560)	-186.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30125735-2	chr14	30125235	30126235	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 11 of 46)	intron (NM_001083616, intron 11 of 46)	103102.0	NM_175343	218865.0	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31406303-4	chr14	31405784	31406784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	11393.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36636940-4	chr16	36636447	36637447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	MTD|LTR|ERVL-MaLR	29130.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-84688115-4	chr7	84687594	84688594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360577, intron 1 of 7)	intron (NM_001360577, intron 1 of 7)	-1546.0	NR_038175	72495.0	Mm.382914	NR_038175	ENSMUSG00000085236	2610206C17Rik	-	RIKEN cDNA 2610206C17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91737554-2	chr6	91737054	91738054	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 6 of 14)	intron (NM_009320, intron 6 of 14)	53487.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118533185-8	chr7	118532701	118533701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001304758, exon 1 of 7)	exon (NM_001304758, exon 1 of 7)	155.0	NM_001304758	12850.0	Mm.20634	NM_009940	ENSMUSG00000030652	Coq7	clk-1	demethyl-Q 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-81375306-4	chr8	81374786	81375786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024617, intron 1 of 24)	intron (NM_001024617, intron 1 of 24)	32724.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	14.5	38.0	15.5	24.5	48.0	38.0
Merged-chr12-117560634-4	chr12	117560157	117561157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 3 of 27)	intron (NM_175930, intron 3 of 27)	44178.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	47.5	105.5	98.0	11.5	55.5	39.5
Merged-chr10-99108151-4	chr10	99107651	99108651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015737)	promoter-TSS (NM_015737)	16.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108210554-4	chr3	108210044	108211044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289545)	promoter-TSS (NM_001289545)	-17.0	NM_175183	72522.0	Mm.187326	NM_175183	ENSMUSG00000048997	Atxn7l2	2610528J18Rik	ataxin 7-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-88866645-4	chr18	88866148	88867148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	27559.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126541038-4	chr4	126540520	126541520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7562.0	NM_153177	76850.0	Mm.86705	NM_153177	ENSMUSG00000042500	Ago4	5730550L01Rik|AI481660|Eif2c4	argonaute RISC catalytic subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-107583049-4	chr1	107582542	107583542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-6964.0	NM_011459	20725.0	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45525043-4	chr7	45524514	45525514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008654, exon 2 of 3)	exon (NM_008654, exon 2 of 3)	1254.0	NM_008654	17872.0	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61590087-2	chr8	61589587	61590587	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	1082.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34842920-7	chr1	34842377	34843377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001160235, exon 1 of 8)	5' UTR (NM_001160235, exon 1 of 8)	173.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126827107-4	chr8	126826598	126827598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21922.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-137421613-3	chr7	137421167	137422167	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10911.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-99323850-4	chr13	99323363	99324363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026873, intron 8 of 9)	intron (NM_026873, intron 8 of 9)	20815.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	39.0	74.0	79.0	38.5	104.5	49.0
Merged-chr16-4722327-4	chr16	4721845	4722845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2989.0	NM_001290761	67824.0	Mm.28451	NM_026393	ENSMUSG00000063445	Nmral1	1110025F24Rik|AI256624	NmrA-like family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108517787-4	chr6	108517300	108518300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 57 of 61)	intron (NM_010585, intron 57 of 61)	28057.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26468246-2	chr17	26467746	26468746	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40226.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	1.0	3.0	1.5	6.5	4.5	2.5
Merged-chr5-20967997-4	chr5	20967476	20968476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16154.0	NM_001080977	242860.0	Mm.254286	NM_001080977	ENSMUSG00000039968	Rsbn1l	8430412F05Rik|AI447441|C330002G24Rik	round spermatid basic protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-68582608-1	chr13	68582108	68583108	+	1000.0	f1_balb.idr	promoter-TSS (NR_131892)	promoter-TSS (NR_131892)	398.0	NR_138478	69577.0	Mm.23670	NM_027123	ENSMUSG00000021532	Fastkd3	2310010B21Rik|AW048587	FAST kinase domains 3	protein-coding	35.5	97.5	68.0	3.0	12.0	23.0
Merged-chr11-117782311-4	chr11	117781821	117782821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195088)	promoter-TSS (NM_001195088)	24.0	NM_001195089	217356.0	Mm.116675	NM_181856	ENSMUSG00000050106	Tmc8	EVIN2|Ever2|mFLJ00400	transmembrane channel-like gene family 8	protein-coding	0.0	0.5	3.0	76.0	147.0	148.5
Merged-chr9-22085478-4	chr9	22084972	22085972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253898)	promoter-TSS (NM_001253898)	-45.0	NM_001253897	26940.0	Mm.425568	NM_012029	ENSMUSG00000066839	Ecsit	Sitpec	ECSIT signalling integrator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79354818-4	chr15	79354312	79355312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304832, intron 1 of 2)	intron (NM_001304832, intron 1 of 2)	6410.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	5.0	7.0	2.0	0.0	1.0	3.0
Merged-chr5-110810184-4	chr5	110809705	110810705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009469)	promoter-TSS (NM_009469)	-124.0	NM_001347394	22241.0	Mm.271898	NM_009469	ENSMUSG00000029512	Ulk1	AU041434|Unc51.1|mKIAA0722	unc-51 like kinase 1	protein-coding	22.5	53.5	33.5	23.0	37.0	40.5
Merged-chr2-50519146-7	chr2	50518638	50519638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	164113.0	NR_154590	102634280.0		NR_154590		Gm48908	-	predicted gene 48908	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-116993582-4	chr8	116993055	116994055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026572)	promoter-TSS (NM_026572)	-106.0	NM_026572	68133.0	Mm.258462	NM_026572	ENSMUSG00000034424	Gcsh	1100001L02Rik|5730591C18Rik	glycine cleavage system protein H (aminomethyl carrier)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73552803-4	chr14	73552298	73553298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361638)	promoter-TSS (NM_001361638)	12.0	NM_001361638	20916.0	Mm.38951	NM_011506	ENSMUSG00000022110	Sucla2	4930547K18Rik|A-SCS|SCS-betaA	succinate-Coenzyme A ligase, ADP-forming, beta subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-3234301-4	chr15	3233735	3234735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-36532.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50820248-3	chr14	50819754	50820754	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009632, intron 13 of 15)	intron (NM_009632, intron 13 of 15)	12338.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	79.0	161.5	92.5	24.5	22.0	26.5
Merged-chr19-34515935-4	chr19	34515436	34516436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	11538.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5424945-4	chr19	5424460	5425460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256515)	promoter-TSS (NM_001256515)	19.0	NM_024176	66556.0	Mm.275446	NM_024176	ENSMUSG00000024914	Drap1	2310074H19Rik|NC2-alpha	Dr1 associated protein 1 (negative cofactor 2 alpha)	protein-coding	33.0	88.0	70.5	13.0	94.5	79.0
Merged-chr19-25138364-4	chr19	25137840	25138840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 23 of 47)	B1_Mur2|SINE|Alu	-98635.0	NM_181404	107351.0	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	71.5	190.5	112.0	27.0	96.0	65.5
Merged-chr2-59397704-4	chr2	59397214	59398214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-11032.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131530151-2	chr2	131529651	131530651	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32134.0	NM_013460	11550.0	Mm.389380	NM_013460	ENSMUSG00000027335	Adra1d	Adra-1|Adra1|Adra1a|Gpcr8|Spr8|[a]1d|alpha1D-AR	adrenergic receptor, alpha 1d	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-10532520-4	chr18	10532039	10533039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083628, intron 18 of 32)	intron (NM_001083628, intron 18 of 32)	77813.0	NM_001081222	77805.0	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-136532201-3	chr2	136531698	136532698	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175667)	promoter-TSS (NM_175667)	-123.0	NM_175667	319196.0	Mm.477841	NM_175667	ENSMUSG00000074771	Ankef1	AV276460|Ankrd5	ankyrin repeat and EF-hand domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121365999-4	chr10	121365508	121366508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 1 of 13)	intron (NM_029364, intron 1 of 13)	918.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	25.0	68.5	50.5	16.0	19.5	11.5
Merged-chr17-10824769-4	chr17	10824277	10825277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 1 of 4)	intron (NM_027032, intron 1 of 4)	15414.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122290904-4	chr3	122290403	122291403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2800.0	NR_030439	791077.0		NR_030439	ENSMUSG00000076456	Mir760	Mirn760|mir-760|mmu-mir-760	microRNA 760	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-127204979-4	chr1	127204484	127205484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145128)	promoter-TSS (NM_145128)	-2.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	7.0	47.5	18.5	13.0	22.5	34.0
Merged-chr19-6057897-4	chr19	6057470	6058470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160239)	promoter-TSS (NM_001160239)	3.0	NM_001190436	14109.0	Mm.329631	NM_007990	ENSMUSG00000038274	Fau	MNSFbeta	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived)	protein-coding	61.0	252.0	150.5	78.0	215.5	202.5
Merged-chr8-71592117-4	chr8	71591634	71592634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025396)	promoter-TSS (NM_025396)	-50.0	NM_025396	66171.0	Mm.282284	NM_025396	ENSMUSG00000031807	Pgls	1110030K05Rik|AI447866|Plgs	6-phosphogluconolactonase	protein-coding	30.5	67.0	69.5	38.0	69.0	69.0
Merged-chr7-128238245-8	chr7	128237740	128238740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177001)	promoter-TSS (NM_177001)	-209.0	NM_177001	100043133.0	Mm.183647	NM_177001	ENSMUSG00000062944	9130023H24Rik	GLI4	RIKEN cDNA 9130023H24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85081419-4	chr8	85080929	85081929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026399)	promoter-TSS (NM_026399)	466.0	NM_001001493	414077.0	Mm.35790	NM_001001493	ENSMUSG00000059355	Wdr83os	-	WD repeat domain 83 opposite strand	protein-coding	21.5	83.5	91.5	53.0	109.5	64.0
Merged-chr15-64106263-1	chr15	64105763	64106763	+	1000.0	f1_balb.idr	intron (NM_001276461, intron 24 of 28)	intron (NM_001276461, intron 24 of 28)	-45815.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0	9.0	2.0	0.0	1.0	5.0
Merged-chr5-107986372-4	chr5	107985857	107986857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	MamSINE1|SINE|tRNA	720.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-58555691-4	chr18	58555188	58556188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081072)	promoter-TSS (NM_001081072)	-552.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	18.0	29.5	7.0	14.5	36.5	24.0
Merged-chr6-52477644-4	chr6	52477161	52478161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14790.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	1.0	0.5	0.5	2.5	2.5	7.0
Merged-chr11-98551135-4	chr11	98550627	98551627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166494)	promoter-TSS (NM_001166494)	30.0	NM_001166494	69376.0	Mm.55996	NM_027061	ENSMUSG00000017195	Zpbp2	1700017D11Rik|2610022C02Rik|ZPBPL	zona pellucida binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-18647038-4	chr19	18646541	18647541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145497, intron 8 of 8)	PB1D10|SINE|Alu	15025.0	NM_145497	225994.0	Mm.211595	NM_145497	ENSMUSG00000037847	Nmrk1	AA408380|D630020N23Rik|Nrk1	nicotinamide riboside kinase 1	protein-coding	12.0	15.0	21.0	26.0	24.0	26.5
Merged-chr7-101900027-2	chr7	101899527	101900527	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027532)	TTS (NM_027532)	3696.0	NM_001291349	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46745963-4	chr18	46745442	46746442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009681, intron 1 of 5)	intron (NM_009681, intron 1 of 5)	4066.0	NM_009681	11777.0	Mm.312536	NM_009681	ENSMUSG00000024480	Ap3s1	-	adaptor-related protein complex 3, sigma 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-34389398-4	chr4	34388905	34389905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-161210.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27562819-4	chr14	27562314	27563314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR3-int|LTR|ERVK	-54354.0	NM_177111	320234.0	Mm.247767	NM_177111	ENSMUSG00000046753	Ccdc66	E230015L20Rik	coiled-coil domain containing 66	protein-coding	1.0	5.5	7.5	0.0	6.5	9.5
Merged-chr7-45016271-4	chr7	45015807	45016807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008422)	promoter-TSS (NM_001008422)	-58.0	NM_001008422	233208.0	Mm.28298	NM_001008422	ENSMUSG00000038406	Scaf1	AI480556|SR-A1	SR-related CTD-associated factor 1	protein-coding	3.5	27.0	7.5	5.0	19.5	20.5
Merged-chr11-70786096-4	chr11	70785611	70786611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21664.0	NM_177565	193043.0	Mm.40966	NM_177565	ENSMUSG00000043602	Zfp3	AI854635|B230309J24|Fnp-1|Zfp-3	zinc finger protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-80739380-2	chr8	80738880	80739880	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053124)	promoter-TSS (NM_053124)	79.0	NM_053124	93762.0	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-68212248-4	chr8	68211760	68212760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64268.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	38.5	48.0	41.0	36.0	30.0	26.0
Merged-chr11-115606266-2	chr11	115605766	115606766	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025305, intron 4 of 4)	intron (NM_025305, intron 4 of 4)	2126.0	NM_025305	50529.0	Mm.193040	NM_025305	ENSMUSG00000046756	Mrps7	MRP-S7|Rpms7|S7mt	mitchondrial ribosomal protein S7	protein-coding	7.0	4.5	0.0	7.5	6.0	1.0
Merged-chr3-67515177-4	chr3	67514656	67515656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164763, intron 1 of 5)	CpG	367.0	NM_001164763	109222.0	Mm.38002	NM_001164763	ENSMUSG00000049404	Rarres1	5430417P09Rik|AI662122	retinoic acid receptor responder (tazarotene induced) 1	protein-coding	2.0	23.0	11.0	2.5	3.5	9.0
Merged-chr17-65604517-4	chr17	65604007	65605007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355402, intron 1 of 6)	MTE2b|LTR|ERVL-MaLR	9048.0	NM_001355402	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19007098-2	chr10	19006598	19007598	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166402, intron 3 of 7)	intron (NM_001166402, intron 3 of 7)	4865.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	12.5	0.0	1.5	12.0	0.0	1.5
Merged-chr5-43186806-4	chr5	43186302	43187302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 5 of 7)	intron (NR_028417, intron 5 of 7)	-46661.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	19.5	61.5	53.0	38.5	49.5	47.5
Merged-chr9-108692065-4	chr9	108691554	108692554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008924)	promoter-TSS (NM_008924)	-89.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118382140-4	chr7	118381656	118382656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362179, intron 7 of 7)	intron (NM_001362179, intron 7 of 7)	61404.0	NM_001362180	110058.0	Mm.156558	NM_138649	ENSMUSG00000058420	Syt17	Bk|sytXVII	synaptotagmin XVII	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40320645-2	chr9	40320145	40321145	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357622, exon 1 of 17)	exon (NM_001357622, exon 1 of 17)	678.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74968377-4	chr15	74967870	74968870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13264.0	NM_001164040	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	41.0	136.0	74.5	57.0	150.5	95.0
Merged-chr1-136624856-4	chr1	136624343	136625343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177643)	promoter-TSS (NM_177643)	-58.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164769762-4	chr2	164769242	164770242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026785)	promoter-TSS (NM_026785)	-187.0	NM_026785	68612.0	Mm.89830	NM_026785	ENSMUSG00000001403	Ube2c	1110015A16Rik|D2Ertd695e	ubiquitin-conjugating enzyme E2C	protein-coding	4.5	4.0	9.5	0.0	14.0	7.0
Merged-chr17-23599220-4	chr17	23598734	23599734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011747, exon 1 of 6)	5' UTR (NM_011747, exon 1 of 6)	253.0	NM_011747	22654.0	Mm.40326	NM_011747	ENSMUSG00000062012	Zfp13	AI835008|Krox-8|Zfp-13	zinc finger protein 13	protein-coding	1.0	14.5	15.5	20.0	36.0	26.0
Merged-chr10-44458743-4	chr10	44458248	44459248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007548)	promoter-TSS (NM_007548)	0.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84665434-2	chr8	84664951	84665951	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2599.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	26.0	44.0	26.0	19.0	55.5	33.0
Merged-chr7-100530899-4	chr7	100530382	100531382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6218.0	NM_183270	68185.0	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	63.5	162.0	118.5	72.5	161.5	123.0
Merged-chr8-104591371-4	chr8	104590867	104591867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024606)	promoter-TSS (NM_001024606)	-101.0	NM_001024606	382051.0	Mm.290750	NM_001024606	ENSMUSG00000048371	Pdp2	4833426J09Rik|Gm1705|mKIAA1348	pyruvate dehyrogenase phosphatase catalytic subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-61363276-3	chr3	61362753	61363753	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1254.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68276525-4	chr10	68276025	68277025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	2201.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	33.5	90.0	98.5	40.5	112.5	91.5
Merged-chr3-27280583-4	chr3	27280096	27281096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36481.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102438149-4	chr12	102437658	102438658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	intron (NM_011175, intron 1 of 13)	1655.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-64733748-4	chr8	64733255	64734255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025436)	promoter-TSS (NM_025436)	-177.0	NM_025436	66234.0	Mm.30119	NM_025436	ENSMUSG00000031604	Msmo1	1500001G16Rik|C78600|DESP4|ERG25|Sc4mol	methylsterol monoxygenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46525115-4	chr18	46524617	46525617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173423, intron 1 of 2)	intron (NM_173423, intron 1 of 2)	854.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54972493-4	chr6	54971990	54972990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001171007)	promoter-TSS (NM_001171007)	122.0	NM_172729	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	9.0	30.0	27.0	13.0	24.5	17.5
Merged-chr17-66519010-4	chr17	66518498	66519498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024448, intron 1 of 5)	intron (NM_024448, intron 1 of 5)	672.0	NM_024448	19328.0	Mm.248313	NM_024448	ENSMUSG00000023460	Rab12	2900054P15Rik|AW555448|C77700	RAB12, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21590981-4	chr16	21590464	21591464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 44 of 46)	intron (NM_001081366, intron 44 of 46)	103701.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135284047-4	chr1	135283547	135284547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145417)	promoter-TSS (NM_145417)	37.0	NM_145417	215615.0	Mm.291048	NM_145417	ENSMUSG00000041926	Rnpep	-	arginyl aminopeptidase (aminopeptidase B)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150851465-4	chr2	150850952	150851952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 2 of 12)	intron (NR_151505, intron 2 of 12)	-8882.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90223239-2	chr9	90222739	90223739	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 7 of 12)	intron (NM_194334, intron 7 of 12)	47530.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123477931-4	chr8	123477453	123478453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054070)	promoter-TSS (NM_054070)	91.0	NR_028260	114896.0	Mm.287475	NM_054070	ENSMUSG00000031967	Afg3l1	1700047G05Rik|3110061K15Rik	AFG3-like AAA ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-57962721-4	chr11	57962200	57963200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46364.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	123.0	239.5	211.5	91.0	162.0	158.5
Merged-chr2-152669459-4	chr2	152668998	152669998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159553)	promoter-TSS (NM_001159553)	37.0	NM_001159552	14950.0	Mm.277327	NM_010376	ENSMUSG00000019188	H13	1200006O09Rik|4930443L17Rik|5031424B04Rik|AV020344|H-13|Hm13|PSL3|Spp	histocompatibility 13	protein-coding	30.5	117.0	100.0	26.5	44.0	54.0
Merged-chr1-160906323-4	chr1	160905838	160906838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024952)	promoter-TSS (NM_001024952)	-73.0	NM_001024952	381305.0	Mm.329667	NM_001024952	ENSMUSG00000040423	Rc3h1	5730557L09Rik|Gm551|N28103|mKIAA2025	RING CCCH (C3H) domains 1	protein-coding	36.0	53.5	54.5	33.0	47.0	63.0
Merged-chr8-108971565-3	chr8	108971058	108972058	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	34698.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-8690026-4	chr8	8689530	8690530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_106114)	TTS (NR_106114)	132.0	NR_106114	102465762.0		NR_106114	ENSMUSG00000098917	Mir7654	Gm27748|mmu-mir-7654	microRNA 7654	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75190164-2	chr11	75189664	75190664	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144491, intron 1 of 12)	intron (NM_144491, intron 1 of 12)	319.0	NM_144491	116905.0	Mm.41496	NM_144491	ENSMUSG00000078789	Dph1	2310011M22Rik|4930488F09Rik|AW551873|Dph2l1|Ovca1	diphthamide biosynthesis 1	protein-coding	5.0	2.0	0.5	10.5	4.0	7.5
Merged-chr9-48480641-4	chr9	48480125	48481125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357505)	promoter-TSS (NM_001357505)	-14.0	NM_001357503	104444.0	Mm.21911	NM_024233	ENSMUSG00000032026	Rexo2	1810038D15Rik|AW107347|Rex2|Sfn|Smfn	RNA exonuclease 2	protein-coding	6.0	13.5	5.5	12.5	20.5	6.5
Merged-chr1-107381644-4	chr1	107381142	107382142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2D|LTR|ERVL	19328.0	NM_025867	66957.0	Mm.12638	NM_025867	ENSMUSG00000026327	Serpinb11	2310046M08Rik|AU015399	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 11	protein-coding	0.0	1.5	0.0	0.0	0.5	0.0
Merged-chr9-120051761-3	chr9	120051265	120052265	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009987, exon 2 of 2)	exon (NM_009987, exon 2 of 2)	16531.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	1.5	2.5	9.5	11.0	3.5	7.5
Merged-chr16-59471862-4	chr16	59471367	59472367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025910)	promoter-TSS (NM_025910)	92.0	NM_025910	67014.0	Mm.289150	NM_025910	ENSMUSG00000022724	Riox2	1810047J07Rik|2410057H13Rik|3830408E23Rik|AI449204|Mina	ribosomal oxygenase 2	protein-coding	9.5	83.0	61.5	19.0	70.0	46.0
Merged-chr13-67128218-4	chr13	67127725	67128725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172392)	promoter-TSS (NM_172392)	-3.0	NM_172392	268670.0	Mm.56274	NM_172392	ENSMUSG00000057396	Zfp759	BC028265|Rslcan-8|Rslcan8	zinc finger protein 759	protein-coding	80.5	228.0	149.0	65.5	190.0	151.5
Merged-chr2-156144193-4	chr2	156143698	156144698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164216)	promoter-TSS (NM_001164216)	-12.0	NM_010911	18041.0	Mm.283604	NM_010911	ENSMUSG00000027618	Nfs1	AA987187|m-Nfs1|m-Nfsl	nitrogen fixation gene 1 (S. cerevisiae)	protein-coding	85.0	97.5	151.0	92.5	132.5	164.5
Merged-chr15-27784079-7	chr15	27783545	27784545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 34 of 56)	intron (NM_001081302, intron 34 of 56)	-102503.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128622695-4	chr7	128622204	128623204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178641, intron 1 of 19)	intron (NM_178641, intron 1 of 19)	11339.0	NM_178641	101490.0	Mm.490344	NM_178641	ENSMUSG00000042105	Inpp5f	5830435P03Rik|AI115354|AW561896|SAC2|cI-27|hSAC2|mKIAA0966	inositol polyphosphate-5-phosphatase F	protein-coding	17.0	9.0	15.5	8.0	17.0	16.0
Merged-chr19-8884182-2	chr19	8883682	8884682	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001286103, exon 2 of 6)	exon (NM_001286103, exon 2 of 6)	304.0	NM_001286103	102308570.0	Mm.27503	NM_001286103	ENSMUSG00000096740	Lbhd1	Gm21743	LBH domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-9769771-4	chr1	9769288	9770288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040462, intron 2 of 3)	RMER4B|LTR|ERVK	-21406.0	NM_173443	70675.0	Mm.274493	NM_173443	ENSMUSG00000045210	Vcpip1	4932442A08|5730421J18Rik|5730538E15Rik|VCIP135|mKIAA1850	valosin containing protein (p97)/p47 complex interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128373127-2	chr7	128372627	128373627	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026418)	TTS (NM_026418)	45045.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130423870-2	chr2	130423378	130424378	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030559)	promoter-TSS (NM_030559)	410.0	NM_178762	319513.0	Mm.482539	NM_178762	ENSMUSG00000037773	Pced1a	A930025D01Rik|AI480484|Fam113a	PC-esterase domain containing 1A	protein-coding	121.0	248.5	101.0	108.5	234.0	207.5
Merged-chr1-57406694-4	chr1	57406156	57407156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302963)	promoter-TSS (NM_001302963)	18.0	NM_001302962	68736.0	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	45.0	130.0	137.0	67.5	120.0	82.0
Merged-chr11-117822756-2	chr11	117822256	117823256	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271729, intron 2 of 5)	intron (NM_001271729, intron 2 of 5)	-3163.0	NM_027827	71562.0	Mm.273958	NM_027827	ENSMUSG00000017718	Afmid	9030621K19Rik|Ammd|FKF|KFA|Kf|formylase	arylformamidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27227821-2	chr7	27227321	27228321	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_181593, exon 1 of 7)	exon (NM_181593, exon 1 of 7)	776.0	NM_181593	233011.0	Mm.30963	NM_181593	ENSMUSG00000003752	Itpkc	9130023N17Rik	inositol 1,4,5-trisphosphate 3-kinase C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-8693513-2	chr6	8693013	8694013	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252266, intron 5 of 11)	intron (NM_001252266, intron 5 of 11)	64945.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24642980-2	chr17	24642480	24643480	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023055, intron 2 of 6)	intron (NM_023055, intron 2 of 6)	1977.0	NM_023449	65962.0	Mm.21587	NM_023055	ENSMUSG00000002504	Slc9a3r2	0610011L07Rik|1200011K07Rik|2010007A20Rik|E3karp|NHERF-2|Nherf2|Octs2|Sip-1|Sip1|Sryip1|Tka-1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	protein-coding	0.0	2.0	1.5	0.0	0.0	1.0
Merged-chr11-98193124-7	chr11	98192581	98193581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013634)	promoter-TSS (NM_013634)	-175.0	NM_013634	19014.0	Mm.12926	NM_013634	ENSMUSG00000018160	Med1	AI480703|CRSP210|DRIP205|PBP|Pparbp|TRAP220|TRIP-2|l11Jus15	mediator complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-47052647-6	chr7	47052182	47053182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026436, intron 1 of 2)	intron (NM_026436, intron 1 of 2)	2042.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-12949651-4	chr7	12949170	12950170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16168.0	NM_001362140	243834.0	Mm.133086	NM_178732	ENSMUSG00000004500	Zfp324	A930002M05|D430030K24Rik|ZF5128	zinc finger protein 324	protein-coding	28.5	20.5	31.0	5.5	31.5	18.5
Merged-chr6-56923920-4	chr6	56923444	56924444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026004)	promoter-TSS (NM_026004)	-12.0	NM_001360963	107569.0	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|P5'N-1|P5N-1|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-96917958-6	chr5	96917466	96918466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3306.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	97.0	292.0	124.5	93.5	246.5	125.0
Merged-chr15-79359439-1	chr15	79358939	79359939	+	1000.0	f1_balb.idr	TTS (NM_001304830)	TTS (NM_001304830)	11037.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	5.0	3.0	2.5	0.0	2.5	2.0
Merged-chr5-113771707-6	chr5	113771258	113772258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151532, exon 1 of 17)	non-coding (NR_151532, exon 1 of 17)	642.0	NR_151532	53890.0	Mm.29594	NM_016926	ENSMUSG00000018974	Sart3	AU045857|mKIAA0156	squamous cell carcinoma antigen recognized by T cells 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35294847-4	chr12	35294326	35295326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99929.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	23.0	20.5	8.5	9.5	12.5	7.0
Merged-chr12-32379537-4	chr12	32379050	32380050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001162903, exon 1 of 1)	exon (NM_001162903, exon 1 of 1)	761.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47221457-7	chr17	47220959	47221959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 3 of 19)	intron (NM_001097623, intron 3 of 19)	-8771.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67479484-4	chr15	67478982	67479982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	252713.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94123072-1	chr13	94122572	94123572	+	1000.0	f0_balb.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	65276.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100859272-4	chr13	100858742	100859742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25815.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112811871-4	chr13	112811369	112812369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008903, intron 1 of 5)	MIRc|SINE|MIR	11092.0	NM_008247	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	7.0	9.5	7.5	10.0	7.5	4.0
Merged-chr8-70761075-4	chr8	70760588	70761588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183170)	promoter-TSS (NM_183170)	-167.0	NM_183170	234384.0	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	4.0	27.5	19.0	14.5	13.5	15.5
Merged-chr13-52636360-4	chr13	52635867	52636867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 9 of 13)	intron (NM_011518, intron 9 of 13)	39485.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-45899916-4	chr8	45899425	45900425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016798, intron 2 of 6)	intron (NM_016798, intron 2 of 6)	14440.0	NM_016798	53318.0	Mm.282900	NM_016798	ENSMUSG00000031636	Pdlim3	AI463105|ALP|Actn2lp	PDZ and LIM domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-46726590-2	chr13	46726090	46727090	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175749, intron 1 of 21)	intron (NM_175749, intron 1 of 21)	1259.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119352266-4	chr9	119351805	119352805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5076.0	NM_001199568	102448.0	Mm.219497	NM_001033209	ENSMUSG00000035769	Xylb	AI132223|AI327421	xylulokinase homolog (H. influenzae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98894612-4	chr10	98894111	98895111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B2|LTR|ERVL	-20031.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47216024-4	chr17	47215547	47216547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 3 of 19)	MIR3|SINE|MIR	-14183.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-33193997-4	chr14	33193493	33194493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8927.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132922745-4	chr4	132922227	132923227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163792)	promoter-TSS (NM_001163792)	-176.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	2.0	10.0	6.5	1.0	12.0	4.5
Merged-chr18-64511112-4	chr18	64510634	64511634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142950, intron 5 of 14)	intron (NM_001142950, intron 5 of 14)	5423.0	NM_027350	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155076129-4	chr1	155075625	155076625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151545, intron 3 of 6)	intron (NR_151545, intron 3 of 6)	7139.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-10965133-6	chr4	10964595	10965595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42524.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	28.0	146.0	101.5	38.5	117.0	80.0
Merged-chr19-45058466-4	chr19	45057954	45058954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10878.0	NM_001362381	94280.0	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	80.0	227.5	172.5	107.5	171.0	161.5
Merged-chr6-124965404-6	chr6	124964859	124965859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355541, exon 1 of 8)	5' UTR (NM_001355541, exon 1 of 8)	179.0	NM_012003	26894.0	Mm.244536	NM_012003	ENSMUSG00000030127	Cops7a	D6Ertd35e|SGN7a	COP9 signalosome subunit 7A	protein-coding	75.5	150.0	150.5	105.0	191.0	124.5
Merged-chr3-116162331-4	chr3	116161842	116162842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32654.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	12.5	22.0	29.5	12.5	24.0	29.5
Merged-chr7-97371652-4	chr7	97371191	97372191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199035)	promoter-TSS (NM_199035)	74.0	NM_199035	381903.0	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	87.5	230.0	136.5	81.5	129.5	116.0
Merged-chr1-131867252-4	chr1	131866741	131867741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144875)	promoter-TSS (NM_144875)	-36.0	NM_144875	226422.0	Mm.34027	NM_144875	ENSMUSG00000026433	Rab29	Rab7l1	RAB29, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28313461-4	chr17	28312989	28313989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163820)	promoter-TSS (NM_001163820)	-41.0	NR_028297	72775.0	Mm.201859	NM_028348	ENSMUSG00000007570	Fance	2810451D06Rik|AI415634|AW209126	Fanconi anemia, complementation group E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-31949502-4	chr12	31949002	31950002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177993, intron 1 of 8)	CpG	743.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	4.0	34.0	14.5	9.0	28.5	23.0
Merged-chr19-6921330-4	chr19	6920822	6921822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007953, intron 1 of 6)	intron (NM_007953, intron 1 of 6)	486.0	NM_007953	26379.0	Mm.386776	NM_007953	ENSMUSG00000024955	Esrra	ERRalpha|Err1|Estrra|Nr3b1	estrogen related receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-65113011-4	chr13	65112554	65113554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133680)	promoter-TSS (NM_133680)	-72.0	NM_133680	66631.0	Mm.239196	NM_133680	ENSMUSG00000038212	Mfsd14b	5730414C17Rik|AU045608|AW539692|Hiatl1	major facilitator superfamily domain containing 14B	protein-coding	41.0	133.5	90.5	21.5	128.5	86.5
Merged-chr5-121399735-2	chr5	121399228	121400228	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172722, intron 1 of 23)	B1F2|SINE|Alu	1746.0	NM_172722	231713.0	Mm.33919	NM_172722	ENSMUSG00000042719	Naa25	4833422K13Rik|A630046C11|AI450868|C330023M02Rik|Mdm20	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding	27.0	76.0	28.0	18.5	40.0	20.5
Merged-chr8-46741181-4	chr8	46740648	46741648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	CpG	1403.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-35569000-4	chr6	35568519	35569519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29131.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118712503-4	chr7	118712014	118713014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360794)	promoter-TSS (NM_001360794)	-29.0	NM_001360794	101565.0	Mm.23279	NM_182995	ENSMUSG00000033904	Ccp110	6330503K22Rik|AA415922|AI427129|AW557948|CP110|cep110	centriolar coiled coil protein 110	protein-coding	3.0	17.0	23.5	0.0	25.0	7.5
Merged-chr1-43811169-4	chr1	43810667	43811667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026430, intron 1 of 14)	intron (NM_026430, intron 1 of 14)	16541.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30587687-4	chr16	30587214	30588214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178069)	promoter-TSS (NM_178069)	-125.0	NM_178069	224092.0	Mm.567	NM_178069	ENSMUSG00000022538	Lsg1	5830465I20|AA409273|D16Bwg1547e	large 60S subunit nuclear export GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45128943-4	chr7	45128468	45129468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009438)	promoter-TSS (NM_009438)	-223.0	NM_009438	22121.0	Mm.180458	NM_009438	ENSMUSG00000074129	Rpl13a	1810026N22Rik|Tstap198-7|tum-antigen	ribosomal protein L13A	protein-coding	2.0	42.5	17.5	6.5	22.5	29.5
Merged-chr13-33085805-4	chr13	33085318	33086318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173052, intron 2 of 6)	intron (NM_173052, intron 2 of 6)	1715.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-153944649-4	chr3	153944175	153945175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007382)	promoter-TSS (NM_007382)	-32.0	NM_007382	11364.0	Mm.10530	NM_007382	ENSMUSG00000062908	Acadm	AU018656|MCAD	acyl-Coenzyme A dehydrogenase, medium chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125402758-2	chr5	125402260	125403260	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12743.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	4.0	14.5	2.0	4.0	14.5	2.0
Merged-chr8-79160070-4	chr8	79159570	79160570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 8 of 14)	RCHARR1|DNA|hAT-Charlie	88513.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40287622-4	chr4	40287123	40288123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-8202.0	NM_001033305	230075.0	Mm.1103	NM_001033305	ENSMUSG00000071014	Ndufb6	CI-B17|Gm137	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6	protein-coding	0.0	0.5	1.5	5.0	0.0	1.5
Merged-chr7-45459875-4	chr7	45459371	45460371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010240)	promoter-TSS (NM_010240)	15.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119966394-3	chr4	119965899	119966899	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	151721.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	47.0	104.5	61.5	37.0	90.5	68.0
Merged-chr10-118815003-4	chr10	118814493	118815493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E2|LTR|ERVL-MaLR	53910.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-79330281-4	chr18	79329786	79330786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-220895.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45664464-4	chr14	45663937	45664937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-6294.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	134.0	217.0	212.0	58.0	150.0	104.5
Merged-chr9-65581139-4	chr9	65580631	65581631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1044.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	113.0	275.0	248.0	115.5	266.0	218.5
Merged-chr10-95361384-4	chr10	95360887	95361887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045337, intron 2 of 2)	intron (NR_045337, intron 2 of 2)	25111.0	NR_045337	69629.0	Mm.250542	NR_045337	ENSMUSG00000100550	2310039L15Rik	A53T-syn|G2-3|PrPsynA53T|Tg(Prnp-SNCA*A53T)23Mkle	RIKEN cDNA 2310039L15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60284463-4	chr10	60283942	60284942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146124)	promoter-TSS (NM_001146124)	-19.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145284506-4	chr7	145284007	145285007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132642)	promoter-TSS (NR_132642)	-496.0	NR_132642	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	6.5	25.5	23.5	3.5	14.0	25.0
Merged-chr4-55741545-4	chr4	55741036	55742036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-209061.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84417294-4	chr12	84416789	84417789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025525)	promoter-TSS (NM_025525)	89.0	NM_025525	66381.0	Mm.24846	NM_025525	ENSMUSG00000098134	Rnf113a2	2310020H19Rik|AI426758|Rnf113a	ring finger protein 113A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54864175-4	chr14	54863660	54864660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177705)	promoter-TSS (NM_001177705)	-2.0	NM_001177705	239099.0	Mm.280994	NM_183174	ENSMUSG00000057156	Homez	mKIAA1443	homeodomain leucine zipper-encoding gene	protein-coding	45.0	128.5	93.0	21.5	119.5	84.0
Merged-chr1-74370098-4	chr1	74369617	74370617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033345)	TTS (NM_001033345)	-5086.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45544079-2	chr17	45543579	45544579	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001013749, exon 3 of 3)	3' UTR (NM_001013749, exon 3 of 3)	5598.0	NM_001013749	210573.0	Mm.329064	NM_001013749	ENSMUSG00000096847	Tmem151b	Gm323	transmembrane protein 151B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36554720-4	chr1	36554222	36555222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304329, intron 2 of 14)	intron (NM_001304329, intron 2 of 14)	2835.0	NM_001304330	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-75853305-2	chr5	75852805	75853805	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125123.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-57232559-4	chr2	57232050	57233050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5128.0	NM_001145820	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-68382596-4	chr2	68382114	68383114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 5 of 17)	intron (NM_016866, intron 5 of 17)	89367.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-53462867-2	chr3	53462367	53463367	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173382)	promoter-TSS (NM_173382)	391.0	NM_172501	212114.0	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102498970-4	chr5	102498475	102499475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146161, intron 1 of 8)	intron (NM_146161, intron 1 of 8)	17584.0	NM_029270	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122054627-4	chr10	122054131	122055131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7316.0	NM_001081037	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59419347-4	chr4	59418823	59419823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 3 of 16)	L1MB3|LINE|L1	19310.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	8.5	70.0	7.0	26.0	26.0	10.5
Merged-chr17-84342579-4	chr17	84342101	84343101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 26 of 37)	LTR40b|LTR|ERVL	123607.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36570161-4	chr1	36569633	36570633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-11752.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47502901-2	chr17	47502401	47503401	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022015)	promoter-TSS (NM_022015)	-610.0	NM_022015	63856.0	Mm.275901	NM_022015	ENSMUSG00000023980	Taf8	AW260255|Tbn	TATA-box binding protein associated factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66872255-2	chr9	66871755	66872755	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	-37549.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46003475-4	chr19	46002985	46003985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176785)	promoter-TSS (NM_176785)	7.0	NM_176785	20170.0	Mm.101110	NM_176785	ENSMUSG00000074811	Hps6	5330434M19Rik|BLOC2|ru	HPS6, biogenesis of lysosomal organelles complex 2 subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79036497-4	chr2	79036009	79037009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	166831.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-78821052-4	chr8	78820537	78821537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001191004, intron 1 of 4)	CpG	115.0	NM_001191004	78651.0	Mm.28694	NM_030145	ENSMUSG00000031683	Lsm6	1500031N17Rik|2410088K19Rik|AI747288	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75862287-4	chr15	75861799	75862799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026960)	promoter-TSS (NM_026960)	-40.0	NM_026960	69146.0	Mm.27385	NM_026960	ENSMUSG00000022575	Gsdmd	1810036L03Rik|AW558049|DF5L|Dfna5l|Gsdmdc1|M2-4	gasdermin D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119792037-4	chr8	119791537	119792537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13621.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35833475-4	chr12	35832984	35833984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92137.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	46.0	35.0	51.5	77.5	107.0	55.5
Merged-chr6-34476219-4	chr6	34475728	34476728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007563)	promoter-TSS (NM_007563)	-128.0	NM_007563	12183.0	Mm.282863	NM_007563	ENSMUSG00000038871	Bpgm	AI323730|AL022789|C86192	2,3-bisphosphoglycerate mutase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105340032-4	chr8	105339519	105340519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	7951.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-50763161-4	chr10	50762667	50763667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 34 of 41)	intron (NM_198007, intron 34 of 41)	-132484.0	NM_011376	20464.0	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded family bHLH transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108809442-4	chr9	108808940	108809940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030729, intron 1 of 12)	ERVB4_1C-LTR_Mm|LTR|ERVK	1060.0	NM_030729	80987.0	Mm.192416	NM_030729	ENSMUSG00000032598	Nckipsd	AF3P21|DIP1|ORF1|SPIN90|WASLBP|WISH|Wasbp	NCK interacting protein with SH3 domain	protein-coding	13.5	10.0	26.5	10.0	7.5	12.5
Merged-chr12-85497499-4	chr12	85497005	85498005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23615.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-97472685-4	chr16	97472188	97473188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020622, intron 7 of 7)	L1MB7|LINE|L1	-9782.0	NR_003520	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152612893-4	chr1	152612402	152613402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	12315.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6747058-4	chr17	6746578	6747578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 7 of 12)	intron (NM_009510, intron 7 of 12)	35702.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-36688969-2	chr3	36688469	36689469	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019510, intron 1 of 11)	intron (NM_019510, intron 1 of 11)	1198.0	NM_019510	22065.0	Mm.74363	NM_019510	ENSMUSG00000027716	Trpc3	Mwk|Trcp3|Trp3|Trrp3	transient receptor potential cation channel, subfamily C, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86154736-4	chr1	86154259	86155259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310702)	promoter-TSS (NM_001310702)	-21.0	NM_030184	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164962069-2	chr2	164961569	164962569	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355481, intron 1 of 24)	intron (NM_001355481, intron 1 of 24)	1223.0	NM_001355480	57138.0	Mm.252987	NM_020333	ENSMUSG00000017740	Slc12a5	KCC2|mKIAA1176	solute carrier family 12, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107469835-4	chr11	107469334	107470334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	CpG	886.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170998887-2	chr1	170998387	170999387	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-20039.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139402946-4	chr7	139402448	139403448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355162, intron 1 of 15)	L1MB5|LINE|L1	2454.0	NM_001355162	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23217627-4	chr11	23217124	23218124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38417.0	NM_001035226	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	0.5	20.0	17.5	12.5	9.0	17.0
Merged-chr17-43058816-4	chr17	43058302	43059302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 3 of 5)	MTD|LTR|ERVL-MaLR	42247.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	108.0	204.0	225.5	238.5	431.5	385.0
Merged-chr6-120155036-4	chr6	120154546	120155546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-38777.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	26.5	82.0	26.0	16.0	77.0	24.5
Merged-chr4-130919425-4	chr4	130918913	130919913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	6079.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84197706-4	chr8	84197184	84198184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-10834.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	65.0	200.0	146.5	72.0	156.5	107.0
Merged-chr4-154933630-3	chr4	154933150	154934150	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5573.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	102.0	69.5	53.5	23.5	44.5	26.0
Merged-chr8-114440062-4	chr8	114439545	114440545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019573, intron 1 of 8)	CpG	393.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-113398357-4	chr2	113397855	113398855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285458, intron 2 of 16)	intron (NM_001285458, intron 2 of 16)	-42709.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	106.0	168.0	133.0	106.5	178.5	162.0
Merged-chr6-116664255-4	chr6	116663757	116664757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178045, intron 1 of 10)	intron (NM_178045, intron 1 of 10)	9579.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117503032-2	chr5	117502532	117503532	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 2 of 19)	ID4|SINE|ID	89030.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-75043306-2	chr5	75042806	75043806	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028850, intron 1 of 5)	intron (NM_028850, intron 1 of 5)	1335.0	NM_028850	74277.0	Mm.239814	NM_028850	ENSMUSG00000029229	Chic2	1700081B18Rik|4930502K01Rik|BTL	cysteine-rich hydrophobic domain 2	protein-coding	2.0	9.5	3.0	0.0	1.0	1.5
Merged-chr4-133056169-4	chr4	133055602	133056602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146155, intron 3 of 6)	intron (NM_146155, intron 3 of 6)	44596.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	20.0	30.0	23.5	22.0	32.0	22.0
Merged-chr15-59721208-4	chr15	59720716	59721716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72562.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	1.0	0.0	0.0	0.5	4.0
Merged-chr13-81793982-4	chr13	81793472	81794472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007684, intron 4 of 4)	intron (NM_007684, intron 4 of 4)	10725.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65763573-4	chr5	65763071	65764071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024917)	promoter-TSS (NM_001024917)	50.0	NM_001024917	333789.0	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	3.5	11.5	5.0	1.0	15.5	6.5
Merged-chr18-36749256-4	chr18	36748756	36749756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011879, exon 7 of 20)	exon (NM_011879, exon 7 of 20)	4600.0	NM_011879	24010.0	Mm.30234	NM_011879	ENSMUSG00000024474	Ik	MuRED	IK cytokine	protein-coding	26.5	50.0	39.5	14.5	26.0	40.5
Merged-chr1-172499834-4	chr1	172499332	172500332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178598)	promoter-TSS (NM_178598)	-414.0	NM_178598	21346.0	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	5.5	7.5	13.0	9.0	5.0	6.5
Merged-chr3-5860674-4	chr3	5860182	5861182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-284434.0	NM_008994	19302.0	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	1.0	0.0	0.0	1.0	0.0	0.0
Merged-chr17-71476425-2	chr17	71475925	71476925	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1082.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-68194632-4	chr18	68194135	68195135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-33311.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-72654814-4	chr10	72654328	72655328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293684)	promoter-TSS (NM_001293684)	-18.0	NM_025635	52696.0	Mm.62876	NM_025635	ENSMUSG00000019923	Zwint	2010007E07Rik|2600001N01Rik|D10Ertd749e|Zwint-1	ZW10 interactor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88277634-4	chr1	88277128	88278128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198652)	promoter-TSS (NM_198652)	-49.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-113739130-4	chr9	113738614	113739614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2359.0	NM_001286599	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	26.5	92.5	57.0	17.5	58.5	73.5
Merged-chr5-31882476-4	chr5	31881976	31882976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 6 of 11)	intron (NM_144541, intron 6 of 11)	184426.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121829650-4	chr8	121829167	121830167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145605)	promoter-TSS (NM_145605)	-98.0	NM_145605	234825.0	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-147012867-4	chr2	147012352	147013352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011917)	promoter-TSS (NM_011917)	-147.0	NM_001356403	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	230.0	583.5	478.5	178.5	340.0	300.5
Merged-chr7-16115699-1	chr7	16115199	16116199	+	1000.0	f1_balb.idr	intron (NM_025898, intron 10 of 10)	intron (NM_025898, intron 10 of 10)	-4177.0	NM_133727	70394.0	Mm.41101	NM_133727	ENSMUSG00000006021	Kptn	2310042D10Rik|2E4|C030013F01Rik	kaptin	protein-coding	1.5	2.5	0.0	1.0	7.0	0.0
Merged-chr11-88201400-3	chr11	88200899	88201899	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291270, intron 1 of 4)	intron (NM_001291270, intron 1 of 4)	-2989.0	NM_024174	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	2.0	19.5	2.0	6.5	11.0	11.5
Merged-chr5-29784986-4	chr5	29784504	29785504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037940, intron 9 of 9)	intron (NM_001037940, intron 9 of 9)	-49068.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-60688077-4	chr9	60687576	60688576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145616)	promoter-TSS (NM_145616)	58.0	NM_001146046	102747.0	Mm.269413	NM_145616	ENSMUSG00000047766	Lrrc49	AI430817|AW050057|D430025H09Rik|PGs4|p79	leucine rich repeat containing 49	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10739004-4	chr19	10738500	10739500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007650)	promoter-TSS (NM_007650)	-26.0	NM_007650	12507.0	Mm.779	NM_007650	ENSMUSG00000024669	Cd5	Ly-1|Ly-12|Ly-A|Lyt-1	CD5 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103443962-4	chr11	103443462	103444462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR16B_MM|LTR|ERVK	-31298.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49792688-4	chr16	49792211	49793211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62943.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117210912-2	chr4	117210412	117211412	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	U5|snRNA|snRNA	-28288.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30416549-4	chr16	30416052	30417052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28022.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	116.0	255.5	164.5	121.5	268.5	171.5
Merged-chr14-20082343-2	chr14	20081843	20082843	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026209, intron 1 of 1)	RMER10B|LTR|ERVL	829.0	NM_026209	67509.0	Mm.292423	NM_026209	ENSMUSG00000045107	Saysd1	1810063B07Rik|4930488P03Rik	SAYSVFN motif domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5731774-4	chr19	5731259	5732259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020491)	promoter-TSS (NM_020491)	-27.0	NM_020491	56390.0	Mm.455818	NM_020491	ENSMUSG00000079478	Sssca1	1500016H19Rik|C184L	Sjogren syndrome/scleroderma autoantigen 1	protein-coding	4.0	5.5	13.5	3.5	5.0	2.5
Merged-chr19-12501636-4	chr19	12501116	12502116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172442, exon 1 of 9)	5' UTR (NM_172442, exon 1 of 9)	380.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-183345116-2	chr1	183344616	183345616	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177389, intron 6 of 26)	CpG	24449.0	NM_177389	338366.0	Mm.41152	NM_177389		Mia3	9130229H14Rik|A930039G15Rik|AU022327|B230399H06Rik|C80126|Gm1525|TANGO1|Tango	melanoma inhibitory activity 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151819411-4	chr1	151818885	151819885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001311166, exon 20 of 20)	3' UTR (NM_001311166, exon 20 of 20)	64011.0	NM_001311166	66967.0	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71538276-2	chr8	71537763	71538763	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198095)	promoter-TSS (NM_198095)	-826.0	NM_198095	69550.0	Mm.260325	NM_198095	ENSMUSG00000046718	Bst2	2310015I10Rik|Bst-2|C87040|CD317|DAMP-1|GREG	bone marrow stromal cell antigen 2	protein-coding	29.5	113.0	37.5	38.5	60.0	31.0
Merged-chr1-166788138-4	chr1	166787653	166788653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106308.0	NM_001347135	240894.0	Mm.246610	NM_172844	ENSMUSG00000026560	Fmo9	4831428F09Rik	flavin containing monooxygenase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72737773-2	chr6	72737273	72738273	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001079822, intron 3 of 12)	intron (NM_001079822, intron 3 of 12)	51272.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99828368-4	chr7	99827878	99828878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016720)	promoter-TSS (NM_016720)	39.0	NM_016720	50877.0	Mm.103703	NM_016720	ENSMUSG00000035239	Neu3	-	neuraminidase 3	protein-coding	3.5	0.5	8.0	2.0	14.0	7.0
Merged-chr13-92637015-4	chr13	92636536	92637536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172588, intron 1 of 11)	intron (NM_172588, intron 1 of 11)	25898.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-33245099-4	chr4	33244618	33245618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033225)	TTS (NM_001033225)	3669.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28952466-4	chr17	28951952	28952952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356299)	promoter-TSS (NM_001356299)	16.0	NM_001356299	66989.0	Mm.435	NM_025888	ENSMUSG00000005936	Kctd20	2410004N11Rik|AI451943|AW541186|D17Ertd562e	potassium channel tetramerisation domain containing 20	protein-coding	31.0	73.5	85.0	38.0	74.0	59.0
Merged-chr3-8747351-4	chr3	8746857	8747857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-80319.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80255214-4	chr18	80254712	80255712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164420)	promoter-TSS (NM_001164420)	-33.0	NM_001164420	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	3.0	11.0	6.0	1.5	3.5	11.0
Merged-chr12-25098915-4	chr12	25098422	25099422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2830.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	187.0	529.5	412.5	216.5	457.5	357.0
Merged-chr14-14294673-4	chr14	14294173	14295173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33440.0	NM_147027	18330.0	Mm.484338	NM_147027	ENSMUSG00000072707	Olfr31	MOR274-1|MTPCR53	olfactory receptor 31	protein-coding	24.0	68.5	56.0	11.0	32.5	40.5
Merged-chr11-80383279-4	chr11	80382821	80383821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011751)	promoter-TSS (NM_011751)	42.0	NM_001130171	22680.0	Mm.401332	NM_011751	ENSMUSG00000017421	Zfp207	8430401D15Rik|BuGZ|Zep|Znf207	zinc finger protein 207	protein-coding	71.5	142.0	119.5	56.0	166.0	124.0
Merged-chr1-134196562-4	chr1	134196062	134197062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357515, intron 3 of 10)	intron (NM_001357515, intron 3 of 10)	3114.0	NM_016749	53311.0	Mm.379067	NM_016749	ENSMUSG00000042451	Mybph	AI385643|MyBP-H	myosin binding protein H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7954628-2	chr10	7954128	7955128	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138667, intron 1 of 6)	intron (NM_138667, intron 1 of 6)	1495.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19186854-2	chr3	19186354	19187354	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253390)	promoter-TSS (NM_001253390)	-466.0	NM_001253390	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66014636-2	chr5	66014136	66015136	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10351.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	2.5	0.0	2.0	2.5	0.0	2.0
Merged-chr9-45294518-5	chr9	45294019	45295019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24581.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-138443097-4	chr3	138442595	138443595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007410)	promoter-TSS (NM_007410)	2.0	NM_007410	11532.0	Mm.3874	NM_007410	ENSMUSG00000028138	Adh5	Adh-5|Adh3|GSNOR	alcohol dehydrogenase 5 (class III), chi polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-111290749-4	chr11	111290233	111291233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	224569.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125069082-1	chr8	125068582	125069582	+	1000.0	f1_balb.idr	intron (NM_174854, intron 1 of 12)	intron (NM_174854, intron 1 of 12)	14887.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	14.5	59.0	42.0	14.5	24.5	19.0
Merged-chr17-35978869-2	chr17	35978369	35979369	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001282012, exon 1 of 4)	5' UTR (NM_001282012, exon 1 of 4)	154.0	NM_001282012	75210.0	Mm.40036	NM_145487	ENSMUSG00000038500	Prr3	4930540G07Rik|Cat56	proline-rich polypeptide 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69685910-4	chr11	69685390	69686390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023517)	promoter-TSS (NM_023517)	-336.0	NM_023517	69583.0	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25253070-4	chr9	25252589	25253589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001359738, exon 1 of 13)	5' UTR (NM_001359738, exon 1 of 13)	197.0	NM_001359738	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72345186-4	chr6	72344689	72345689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138592)	promoter-TSS (NM_138592)	-14.0	NM_138592	28035.0	Mm.281900	NM_138592	ENSMUSG00000056305	Usp39	AA408960|AI894154|CGI-21|D6Wsu157e|SAD1	ubiquitin specific peptidase 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46141084-4	chr8	46140585	46141585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16939.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9445504-1	chr19	9445004	9446004	+	1000.0	f0_balb.idr	Intergenic	Intergenic	113744.0	NR_073559	619371.0	Mm.316894	NM_001030317		Stxbp3-ps	Munc18c(L)|Stxbp3-1|Stxbp3b	syntaxin-binding protein 3, pseudogene	pseudo	1.5	5.0	2.0	16.5	33.0	15.0
Merged-chr3-101800037-4	chr3	101799531	101800531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36192.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7217682-4	chr19	7217195	7218195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007750)	promoter-TSS (NM_007750)	-79.0	NM_007750	12868.0	Mm.14022	NM_007750	ENSMUSG00000035885	Cox8a	COX8L	cytochrome c oxidase subunit VIIIa	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25480337-2	chr14	25479837	25480837	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	21152.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	1.0	6.0	5.0	1.5	6.0	4.5
Merged-chr2-33404982-2	chr2	33404482	33405482	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	26342.0	NM_001085507	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16053363-4	chr7	16052856	16053856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18489.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	13.0	32.5	43.5	28.0	42.5	31.0
Merged-chr4-126260965-4	chr4	126260452	126261452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1453.0	NM_013718	27096.0	Mm.8392	NM_013718	ENSMUSG00000028847	Trappc3	1110058K12Rik|AI835942|AU019197|Bet3	trafficking protein particle complex 3	protein-coding	24.0	53.5	60.5	25.5	55.5	38.0
Merged-chr19-46648769-4	chr19	46648286	46649286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177813, intron 2 of 3)	intron (NM_001177813, intron 2 of 3)	24214.0	NM_007809	13074.0	Mm.1262	NM_007809	ENSMUSG00000003555	Cyp17a1	Cyp17|p450c17	cytochrome P450, family 17, subfamily a, polypeptide 1	protein-coding	28.0	65.0	50.0	60.0	84.0	65.5
Merged-chr17-24696104-4	chr17	24695565	24696565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357836)	promoter-TSS (NM_001357836)	91.0	NM_023040	11692.0	Mm.28124	NM_023040	ENSMUSG00000040888	Gfer	Alr|ERV1	growth factor, augmenter of liver regeneration	protein-coding	19.5	28.0	34.0	9.0	29.0	32.5
Merged-chr2-14229292-4	chr2	14228753	14229753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008625)	promoter-TSS (NM_008625)	-161.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100547152-4	chr11	100546652	100547652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028918, intron 1 of 11)	MIR|SINE|MIR	1520.0	NM_028918	74407.0	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126828272-4	chr8	126827703	126828703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20817.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	59.0	84.5	56.0	39.0	68.0	68.5
Merged-chr2-60019314-4	chr2	60018811	60019811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 2 of 35)	intron (NM_001001182, intron 2 of 35)	106429.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181484188-2	chr2	181483688	181484688	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9018.0	NM_183181	241850.0	Mm.87455	NM_183181	ENSMUSG00000055882	Abhd16b	1700095H12	abhydrolase domain containing 16B	protein-coding	9.5	17.0	24.5	37.0	40.0	26.0
Merged-chr14-40965717-4	chr14	40965246	40966246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	1150.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91068417-2	chr2	91067917	91068917	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110981, intron 1 of 7)	intron (NR_110981, intron 1 of 7)	1898.0	NM_026721	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-76098690-4	chr13	76098199	76099199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029847)	promoter-TSS (NM_029847)	-35.0	NM_001081352	218343.0	Mm.277964	NM_001081352	ENSMUSG00000033991	Ttc37	-	tetratricopeptide repeat domain 37	protein-coding	2.0	36.5	13.5	16.0	19.5	17.0
Merged-chr3-95293806-4	chr3	95293314	95294314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133858, intron 7 of 9)	intron (NM_133858, intron 7 of 9)	10879.0	NM_199475	75007.0	Mm.279287	NM_133858	ENSMUSG00000038712	Mindy1	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|Fam63a|cI-40|mKIAA1390|ni	MINDY lysine 48 deubiquitinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-97751229-4	chr4	97750726	97751726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-26400.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-81754851-4	chr12	81754349	81755349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001174107, intron 2 of 10)	intron (NM_001174107, intron 2 of 10)	26321.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-53188810-4	chr5	53188313	53189313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172710, intron 2 of 23)	intron (NM_172710, intron 2 of 23)	24639.0	NM_172710	231238.0	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60238843-2	chr18	60238343	60239343	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033767, intron 2 of 2)	intron (NM_001033767, intron 2 of 2)	26766.0	NM_001033767	240327.0	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45124455-4	chr7	45123893	45124893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013725)	promoter-TSS (NM_013725)	-4.0	NM_013725	27207.0	Mm.196538	NM_013725	ENSMUSG00000003429	Rps11	-	ribosomal protein S11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-14174352-4	chr10	14173853	14174853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	207974.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123949635-4	chr9	123949151	123950151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	19041.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-3918170-4	chr13	3917665	3918665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019671)	promoter-TSS (NM_019671)	55.0	NM_019671	56349.0	Mm.22261	NM_019671	ENSMUSG00000021215	Net1	Net1a|mNET1	neuroepithelial cell transforming gene 1	protein-coding	0.0	0.5	0.0	3.5	2.0	2.0
Merged-chr4-26441717-4	chr4	26441193	26442193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95041.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36713554-4	chr18	36713054	36714054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13261.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	2.5	7.0	7.0	6.5	7.5	5.5
Merged-chr17-21370550-4	chr17	21370055	21371055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERVK9C_I-int|LTR|ERVK	-13193.0	NM_172486	210503.0	Mm.33443	NM_172486	ENSMUSG00000062743	Zfp677	A830058L05Rik|Tce8	zinc finger protein 677	protein-coding	2.5	0.0	7.5	0.0	0.0	0.5
Merged-chr3-81113082-4	chr3	81112540	81113540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	B4A|SINE|B4	76624.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	74.5	250.0	154.5	89.0	204.5	147.0
Merged-chr7-97696629-4	chr7	97696135	97697135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023671)	promoter-TSS (NM_023671)	-14.0	NR_154551	102641859.0	Mm.211743	NR_154551		Rsf1os2	Gm15623	remodeling and spacing factor 1, opposite strand 2	ncRNA	18.0	83.0	77.5	19.5	20.5	43.5
Merged-chr16-4727077-2	chr16	4726577	4727577	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136066, intron 1 of 5)	intron (NM_001136066, intron 1 of 5)	716.0	NM_001136066	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-75877403-4	chr16	75876906	75877906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023380, intron 4 of 7)	intron (NM_023380, intron 4 of 7)	31860.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109863606-4	chr8	109863115	109864115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009677, exon 24 of 24)	3' UTR (NM_009677, exon 24 of 24)	-4988.0	NM_001122594	244650.0	Mm.23494	NM_001122594	ENSMUSG00000031732	Phlpp2	AI481772|C130044A18Rik|Phlppl	PH domain and leucine rich repeat protein phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73148183-2	chr14	73147683	73148683	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033185, intron 1 of 15)	intron (NR_033185, intron 1 of 15)	5398.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142909297-4	chr5	142908810	142909810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2556.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-10182229-4	chr18	10181710	10182710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009071)	promoter-TSS (NM_009071)	-418.0	NM_009071	19877.0	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144244886-2	chr2	144244386	144245386	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	21316.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45923083-4	chr7	45922587	45923587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1661.0	NM_010129	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	2.0	25.5	19.5	11.0	21.5	7.5
Merged-chr7-92874393-6	chr7	92873822	92874822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028243)	promoter-TSS (NM_028243)	-75.0	NM_001080995	74041.0	Mm.26468	NM_028729	ENSMUSG00000030641	Ddias	4632434I11Rik|noxin	DNA damage-induced apoptosis suppressor	protein-coding	44.5	116.5	47.0	35.0	155.0	76.0
Merged-chr15-68257629-2	chr15	68257129	68258129	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152182, intron 1 of 13)	intron (NR_152182, intron 1 of 13)	1227.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167698118-4	chr2	167697602	167698602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_110334)	TTS (NR_110334)	6925.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41467316-4	chr13	41466814	41467814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	20046.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32304270-3	chr19	32303794	32304794	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 2 of 9)	intron (NM_144792, intron 2 of 9)	45022.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54679360-3	chr6	54678843	54679843	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-2281.0	NM_001289741	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	10.5	16.0	7.5	14.0	48.5	31.0
Merged-chr11-114725197-4	chr11	114724682	114725682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2230.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117433271-2	chr8	117432771	117433771	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 9 of 20)	intron (NM_028941, intron 9 of 20)	-19752.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47175019-4	chr6	47174560	47175560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004357, intron 20 of 23)	intron (NM_001004357, intron 20 of 23)	-69336.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	5.5	8.5	10.0	5.5	6.5	7.5
Merged-chr9-109082454-4	chr9	109081942	109082942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025689)	promoter-TSS (NM_025689)	-54.0	NM_025689	66658.0	Mm.128227	NM_025689	ENSMUSG00000025645	Ccdc51	5730568A12Rik|AI551049	coiled-coil domain containing 51	protein-coding	10.5	30.5	35.5	20.0	39.0	46.5
Merged-chr10-20772243-4	chr10	20771709	20772709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47131.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	154.0	477.5	345.0	145.0	413.5	242.0
Merged-chr15-96285140-2	chr15	96284640	96285640	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2382.0	NM_175251	77044.0	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|BAF200|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-53566911-4	chr17	53566411	53567411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020005)	promoter-TSS (NM_020005)	-60.0	NM_020005	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	3.0	10.5	12.0	3.5	10.5	13.0
Merged-chr2-71814199-4	chr2	71813691	71814691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008397, intron 1 of 25)	intron (NM_008397, intron 1 of 25)	27252.0	NM_001277970	16403.0	Mm.225096	NM_008397	ENSMUSG00000027111	Itga6	5033401O05Rik|AI115430|Cd49f|VLA-6	integrin alpha 6	protein-coding	0.0	5.5	0.5	4.0	9.5	1.5
Merged-chr2-132266333-4	chr2	132265843	132266843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291040, intron 1 of 3)	intron (NM_001291040, intron 1 of 3)	3195.0	NM_138651	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145284015-4	chr7	145283528	145284528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132642)	promoter-TSS (NR_132642)	-17.0	NR_132642	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121841663-4	chr3	121841139	121842139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26337.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113154182-4	chr12	113153695	113154695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007763)	TTS (NM_007763)	2183.0	NM_007763	12925.0	Mm.272368	NM_007763	ENSMUSG00000006360	Crip1	CRHP|CRP1|Crip	cysteine-rich protein 1 (intestinal)	protein-coding	42.5	91.0	64.0	51.5	57.0	49.0
Merged-chr12-111443324-2	chr12	111442824	111443824	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009396, intron 1 of 11)	intron (NM_009396, intron 1 of 11)	663.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43036306-4	chr17	43035827	43036827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 1 of 5)	intron (NM_178589, intron 1 of 5)	19772.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	34.5	45.5	40.0	44.5	79.0	58.5
Merged-chr17-56717762-4	chr17	56717256	56718256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178926)	promoter-TSS (NM_178926)	-6.0	NM_027244	69875.0	Mm.279823	NM_027244	ENSMUSG00000002379	Ndufa11	2010012C24Rik|AV006275|B14.7	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124863094-4	chr8	124862581	124863581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025615)	promoter-TSS (NM_025615)	48.0	NM_010322	14712.0	Mm.29114	NM_010322	ENSMUSG00000031985	Gnpat	AU019525|D1Ertd819e|DHAPAT	glyceronephosphate O-acyltransferase	protein-coding	42.0	77.0	112.5	78.5	79.0	67.0
Merged-chr4-119108984-8	chr4	119108523	119109523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011400, intron 1 of 9)	CpG	278.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	19.5	34.0	59.0	10.0	12.5	24.0
Merged-chr19-47067673-4	chr19	47067145	47068145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177342)	promoter-TSS (NM_177342)	-103.0	NM_177342	226182.0	Mm.301522	NM_177342	ENSMUSG00000025049	Taf5	6330528C20Rik|AV117817	TATA-box binding protein associated factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19662684-2	chr7	19662184	19663184	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019649, intron 1 of 13)	intron (NM_019649, intron 1 of 13)	2346.0	NM_019649	56457.0	Mm.290960	NM_019649	ENSMUSG00000002981	Clptm1	HS9|N14	cleft lip and palate associated transmembrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81691801-4	chr13	81691308	81692308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081176, intron 3 of 7)	intron (NM_001081176, intron 3 of 7)	19205.0	NM_001081176	67486.0	Mm.279781	NM_001081176	ENSMUSG00000035834	Polr3g	2310047G20Rik|AV275904|RPC32|RPC7	polymerase (RNA) III (DNA directed) polypeptide G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31453766-3	chr6	31453300	31454300	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013791, intron 8 of 17)	RSINE1|SINE|B4	54972.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-21450355-4	chr17	21449856	21450856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308323)	promoter-TSS (NM_001308323)	-18.0	NM_001308323	22709.0	Mm.293030	NM_009558	ENSMUSG00000023892	Zfp51	Zfp-51|zfec12	zinc finger protein 51	protein-coding	0.0	1.0	0.0	0.0	0.0	0.5
Merged-chr14-55540275-4	chr14	55539773	55540773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028994)	promoter-TSS (NM_028994)	7.0	NM_028994	74551.0	Mm.29856	NM_028994	ENSMUSG00000040618	Pck2	1810010O14Rik|9130022B02Rik|PEPCK-M	phosphoenolpyruvate carboxykinase 2 (mitochondrial)	protein-coding	1.5	10.0	7.5	2.5	11.5	1.5
Merged-chr4-142081924-4	chr4	142081406	142082406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-2392.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-123934135-2	chr1	123933635	123934635	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_199021, intron 1 of 25)	intron (NM_199021, intron 1 of 25)	111424.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-10209220-4	chr14	10208723	10209723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 5 of 9)	MTD|LTR|ERVL-MaLR	244235.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80110418-2	chr12	80109918	80110918	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007564, exon 2 of 2)	exon (NM_007564, exon 2 of 2)	2595.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	11.0	1.0	3.5	8.5	8.0	4.5
Merged-chr15-38653157-4	chr15	38652687	38653687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8717.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45950691-4	chr13	45950174	45951174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	14317.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71037710-4	chr2	71037201	71038201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 1 of 9)	MLT1L|LTR|ERVL-MaLR	17905.0	NM_145524	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44579597-4	chr9	44579082	44580082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25310.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118712910-1	chr9	118712410	118713410	+	1000.0	f1_balb.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	1218.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	14.0	16.0	5.5	8.0	17.5	2.0
Merged-chr7-126739623-4	chr7	126739081	126740081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-20045.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115475650-4	chr11	115475153	115476153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361594)	promoter-TSS (NM_001361594)	-14.0	NM_177778	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99248703-4	chr5	99248208	99249208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	4219.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-125124945-4	chr4	125124422	125125422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153159, intron 2 of 5)	intron (NM_153159, intron 2 of 5)	2959.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19077873-5	chr7	19077335	19078335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010058, intron 1 of 4)	intron (NM_010058, intron 1 of 4)	1635.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	49.0	70.5	36.5	18.0	41.0	19.0
Merged-chr19-41327536-2	chr19	41327036	41328036	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 6 of 16)	intron (NM_031376, intron 6 of 16)	57534.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51454944-2	chr10	51454444	51455444	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25668.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33624932-4	chr16	33624424	33625424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_134251, exon 9 of 13)	exon (NM_134251, exon 9 of 13)	-59542.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112633146-4	chr12	112632665	112633665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 5 of 12)	intron (NM_007421, intron 5 of 12)	-11663.0	NM_001161737	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115631864-4	chr5	115631376	115632376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027810)	promoter-TSS (NR_027810)	-60.0	NR_027810	66123.0	Mm.133063	NM_021417	ENSMUSG00000107121	1110006O24Rik	-	RIKEN cDNA 1110006O24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101998432-4	chr5	101997940	101998940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	71481.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	30.5	69.0	49.5	32.0	77.5	66.0
Merged-chr1-175625658-4	chr1	175625208	175626208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010209)	promoter-TSS (NM_010209)	-73.0	NM_010209	14194.0	Mm.41502	NM_010209	ENSMUSG00000026526	Fh1	Fh|Fh-1	fumarate hydratase 1	protein-coding	19.0	22.0	15.5	22.0	45.5	35.0
Merged-chr11-101551433-2	chr11	101550933	101551933	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252220)	promoter-TSS (NM_001252220)	522.0	NM_009764	12189.0	Mm.244975	NM_009764	ENSMUSG00000017146	Brca1	-	breast cancer 1, early onset	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88337856-4	chr17	88337351	88338351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102853.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	16.5	69.0	52.5	20.0	41.5	42.5
Merged-chr19-53855173-4	chr19	53854666	53855666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170847, intron 12 of 13)	intron (NM_001170847, intron 12 of 13)	-37065.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	12.0	18.5	16.5	23.5	15.5	19.5
Merged-chr11-87404554-4	chr11	87404057	87405057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031386)	promoter-TSS (NM_031386)	-62.0	NM_053269	114714.0	Mm.37376	NM_053269	ENSMUSG00000007646	Rad51c	R51H3|Rad51l2	RAD51 paralog C	protein-coding	43.0	65.5	97.0	57.0	111.0	93.5
Merged-chr7-80324377-4	chr7	80323859	80324859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173445)	promoter-TSS (NM_173445)	95.0	NM_173445	269955.0	Mm.474502	NM_173445	ENSMUSG00000038930	Rccd1	5830436H09|E430018M08Rik	RCC1 domain containing 1	protein-coding	52.5	136.0	104.5	61.0	127.0	111.5
Merged-chr12-84766451-4	chr12	84765891	84766891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 1 of 3)	RMER13A1|LTR|ERVK	6721.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121017952-2	chr11	121017452	121018452	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21526.0	NM_009854	12516.0	Mm.4100	NM_009854	ENSMUSG00000025163	Cd7	-	CD7 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44327293-4	chr10	44326782	44327782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001314013, intron 5 of 6)	intron (NM_001314013, intron 5 of 6)	-32394.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80774329-4	chr7	80773755	80774755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	MIRb|SINE|MIR	29076.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83732330-4	chr17	83731819	83732819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 3 of 16)	intron (NM_054082, intron 3 of 16)	26156.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55471618-4	chr13	55471135	55472135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001030296, intron 1 of 2)	CpG	6141.0	NR_105909	102465569.0		NR_105909	ENSMUSG00000098341	Mir6944	Gm27710|mmu-mir-6944	microRNA 6944	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94107362-4	chr10	94106857	94107857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 8 of 20)	intron (NM_053072, intron 8 of 20)	-40574.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	67.5	119.5	96.0	68.5	95.0	81.0
Merged-chr8-14608093-3	chr8	14607652	14608652	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-280384.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	11.0	5.0	2.0	17.5	21.5	19.0
Merged-chr4-133159887-4	chr4	133159386	133160386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	29253.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	16.0	60.0	37.0	24.0	56.5	34.0
Merged-chr6-83040809-4	chr6	83040256	83041256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013586, intron 4 of 13)	intron (NM_013586, intron 4 of 13)	6532.0	NM_013586	16950.0	Mm.380433	NM_013586	ENSMUSG00000000693	Loxl3	Lor2|Loxl2	lysyl oxidase-like 3	protein-coding	117.0	289.0	207.0	90.5	141.5	167.5
Merged-chr19-3321777-4	chr19	3321274	3322274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1527.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97083029-4	chr7	97082544	97083544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	1293.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6373127-4	chr4	6372635	6373635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	7455.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	38.5	121.5	71.5	38.5	95.0	77.0
Merged-chr4-11480199-4	chr4	11479687	11480687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5771.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-95657408-4	chr1	95656891	95657891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159745, intron 2 of 3)	intron (NM_001159745, intron 2 of 3)	10203.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17064018-4	chr17	17063517	17064517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005358)	promoter-TSS (NM_001005358)	-86.0	NM_001005358	449000.0	Mm.483718	NM_001005358	ENSMUSG00000096696	Zfp960	-	zinc finger protein 960	protein-coding	4.0	11.0	0.5	1.5	3.5	4.0
Merged-chr3-95995607-2	chr3	95995107	95996107	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_023320, exon 2 of 6)	exon (NM_023320, exon 2 of 6)	232.0	NM_023320	67220.0	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	18.0	31.5	37.5	19.5	35.0	30.0
Merged-chr9-18468247-4	chr9	18467747	18468747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028160, intron 4 of 7)	intron (NM_028160, intron 4 of 7)	5312.0	NM_028935	72230.0	Mm.289689	NM_028160	ENSMUSG00000074500	Zfp558	1700007A21Rik|4932704I17Rik|Zfp558-ps	zinc finger protein 558	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-80267114-4	chr2	80266616	80267616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25354.0	NM_177256	320769.0	Mm.60992	NM_177256	ENSMUSG00000050114	Prdx6b	1-cysPrx-P1|4930414C22Rik|Aop2-rs1|Prdx5-rs1|Prdx6-ps1|Prdx6-rs1|Prdx6-rs1-ps	peroxiredoxin 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145112600-4	chr7	145112097	145113097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95522.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	139.0	413.0	234.0	138.0	198.5	157.5
Merged-chr19-26605054-4	chr19	26604544	26605544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011416)	promoter-TSS (NM_011416)	-116.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	21.5	44.0	33.5	11.0	38.0	22.0
Merged-chr9-42141769-4	chr9	42141266	42142266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17469.0	NM_011436	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	3.0	13.5	10.5	7.0	7.0	11.0
Merged-chr3-62507021-4	chr3	62506507	62507507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028136)	promoter-TSS (NM_028136)	-19.0	NM_028136	72162.0	Mm.224233	NM_028136	ENSMUSG00000027770	Dhx36	2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488	DEAH (Asp-Glu-Ala-His) box polypeptide 36	protein-coding	21.5	61.0	46.5	17.0	66.0	41.0
Merged-chr11-5542291-4	chr11	5541780	5542780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134033)	promoter-TSS (NM_134033)	-63.0	NM_134033	104479.0	Mm.210403	NM_134033	ENSMUSG00000020482	Ccdc117	1110004K02Rik|1700026O03Rik|AU018638|AU042822|AV173073|BC018601	coiled-coil domain containing 117	protein-coding	15.5	55.0	27.0	23.0	43.0	26.0
Merged-chr13-113013496-4	chr13	113012930	113013930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19562.0	NM_001037914	622408.0	Mm.360976	NM_001037914	ENSMUSG00000074651	Mcidas	EG622408|Gm6320|Idas|Mci|Mcin	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52000230-4	chr3	51999692	52000692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	104814.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75025564-4	chr14	75025073	75026073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198642, intron 1 of 13)	intron (NM_198642, intron 1 of 13)	9546.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105967770-4	chr1	105967257	105968257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	22525.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	35.0	115.5	61.5	157.5	361.0	213.0
Merged-chr9-25541564-4	chr9	25541078	25542078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	RLTR53_Mm|LTR|ERVK	59981.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62811830-6	chr9	62811331	62812331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010193)	promoter-TSS (NM_010193)	-183.0	NM_010193	14155.0	Mm.24069	NM_010193	ENSMUSG00000032244	Fem1b	mKIAA0396	feminization 1 homolog b (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38468461-4	chr15	38467943	38468943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22104.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88666556-4	chr8	88666061	88667061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 4 of 12)	intron (NM_145857, intron 4 of 12)	19214.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	37.0	107.5	143.0	52.0	161.5	123.5
Merged-chr11-69366630-4	chr11	69366132	69367132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146019, intron 1 of 39)	intron (NM_146019, intron 1 of 39)	2794.0	NM_146019	216848.0	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	6.0	21.0	15.5	6.0	21.0	15.0
Merged-chr19-46698353-4	chr19	46697858	46698858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025563, intron 1 of 4)	intron (NM_025563, intron 1 of 4)	8452.0	NM_025563	66439.0	Mm.87163	NM_025563	ENSMUSG00000062376	Borcs7	2010012O05Rik|4930569L17Rik|AI413851|AI467257	BLOC-1 related complex subunit 7	protein-coding	6.5	16.0	7.0	7.0	18.5	6.5
Merged-chr5-138683231-4	chr5	138682761	138683761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60402.0	NM_183025	243308.0	Mm.36612	NM_183025	ENSMUSG00000056014	A430033K04Rik	C86988	RIKEN cDNA A430033K04 gene	protein-coding	155.0	268.0	246.0	140.0	325.0	255.0
Merged-chr2-148752488-4	chr2	148751972	148752972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177655, intron 2 of 3)	intron (NM_177655, intron 2 of 3)	2111.0	NM_177655	228756.0	Mm.189390	NM_177655	ENSMUSG00000055177	Cstl1	RCET1|RCET2|RCET3	cystatin-like 1	protein-coding	5.0	5.0	8.5	10.5	4.0	7.0
Merged-chr8-105270523-2	chr8	105270023	105271023	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001256044, intron 1 of 11)	intron (NM_001256044, intron 1 of 11)	722.0	NM_001256044	26386.0	Mm.89204	NM_011939	ENSMUSG00000033249	Hsf4	HSF 4|HSTF 4|HSTF4|ldis1|mHSF4	heat shock transcription factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-137751821-4	chr1	137751286	137752286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-214669.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-33185199-4	chr14	33184713	33185713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146022)	promoter-TSS (NM_001146022)	-147.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-178506230-4	chr2	178505721	178506721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75706.0	NM_198656	381409.0	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3930202-4	chr11	3929709	3930709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130458, intron 2 of 9)	intron (NM_001130458, intron 2 of 9)	1752.0	NM_001130459	21452.0	Mm.20948	NM_015749	ENSMUSG00000020432	Tcn2	AW208754|Tcn-2	transcobalamin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84114311-4	chr12	84113804	84114804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346528)	promoter-TSS (NM_001346528)	-24.0	NM_028821	105000.0	Mm.101525	NM_028821	ENSMUSG00000042523	Dnal1	1700010H15Rik|AW121714|Dnalc1|E330027P08Rik	dynein, axonemal, light chain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46686941-4	chr8	46686426	46687426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M6|LINE|L1	52589.0	NR_045750	100503498.0	Mm.187358	NR_045750	ENSMUSG00000097534	Gm16675	-	predicted gene, 16675	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86875017-2	chr4	86874502	86875502	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290543, intron 1 of 5)	intron (NM_001290543, intron 1 of 5)	588.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	5.5	6.0	7.5	6.0	23.0	11.0
Merged-chr18-35942319-4	chr18	35941827	35942827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22503.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111298621-4	chr10	111298144	111299144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027914)	promoter-TSS (NM_027914)	-35.0	NM_027914	71769.0	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11076200-4	chr4	11075697	11076697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085493)	promoter-TSS (NM_001085493)	8.0	NM_001085493	76947.0	Mm.275265	NM_001085493	ENSMUSG00000050323	Ndufaf6	2310030N02Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103051479-4	chr11	103050977	103051977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008707, intron 3 of 11)	intron (NM_008707, intron 3 of 11)	22934.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	19.5	18.0	31.5	14.0	22.5	20.5
Merged-chr8-77456001-2	chr8	77455501	77456501	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 1 of 22)	AT_rich|Low_complexity|Low_complexity	-61055.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-53267129-4	chr5	53266637	53267637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145433)	promoter-TSS (NM_001145433)	31.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167686101-2	chr2	167685601	167686601	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-2814.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9882502-4	chr13	9881982	9882982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 4 of 4)	intron (NM_033269, intron 4 of 4)	-117161.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87315423-4	chr17	87314943	87315943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 5 of 19)	intron (NM_028639, intron 5 of 19)	32557.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85299719-5	chr8	85299211	85300211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022997)	promoter-TSS (NM_022997)	79.0	NR_028268	56452.0	Mm.29709	NM_019716	ENSMUSG00000031697	Orc6	6720420I10Rik|Orc6l	origin recognition complex, subunit 6	protein-coding	55.5	191.5	232.5	102.0	178.0	156.5
Merged-chr12-85456588-2	chr12	85456088	85457088	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17302.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46576442-4	chr18	46575940	46576940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1907.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55405785-4	chr1	55405269	55406269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001114663)	promoter-TSS (NM_001114663)	-177.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	8.5	17.0	32.0	28.0	46.5	31.0
Merged-chr5-135064142-4	chr5	135063629	135064629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025362)	promoter-TSS (NM_025362)	-77.0	NM_025362	66114.0	Mm.178012	NM_025362	ENSMUSG00000061118	Dnajc30	1300007M11Rik|Wbscr18	DnaJ heat shock protein family (Hsp40) member C30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141357305-2	chr7	141356805	141357805	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133191, exon 12 of 21)	exon (NM_133191, exon 12 of 21)	7805.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-57487953-4	chr8	57487455	57488455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021788)	promoter-TSS (NM_021788)	-8.0	NR_126553	78353.0	Mm.426240	NR_126553	ENSMUSG00000096917	2500002B13Rik	-	RIKEN cDNA 2500002B13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-123335069-4	chr3	123334561	123335561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027135, intron 10 of 22)	intron (NM_027135, intron 10 of 22)	50929.0	NM_201638	210529.0	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding	51.0	89.0	60.0	35.5	78.5	30.5
Merged-chr2-92434608-3	chr2	92434108	92435108	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009963)	promoter-TSS (NM_009963)	-539.0	NM_009963	12953.0	Mm.254181	NM_009963	ENSMUSG00000068742	Cry2	AV006279|D130054K12Rik	cryptochrome 2 (photolyase-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25156319-4	chr8	25155820	25156820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177089, exon 13 of 13)	3' UTR (NM_177089, exon 13 of 13)	2913.0	NR_106187	102467006.0		NR_106187	ENSMUSG00000099142	Mir8108	Gm27484|mmu-mir-8108	microRNA 8108	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14627138-4	chr8	14626647	14627647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-261389.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	3.0	3.0	4.5	0.0	0.0	5.0
Merged-chr11-73030999-4	chr11	73030516	73031516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018883, intron 9 of 15)	intron (NM_018883, intron 9 of 15)	12008.0	NM_018883	55984.0	Mm.9998	NM_018883	ENSMUSG00000020785	Camkk1	AI846603|CaMKKalpha|Camkk	calcium/calmodulin-dependent protein kinase kinase 1, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55757336-4	chr16	55756832	55757832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64806.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-77832384-4	chr1	77831888	77832888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-317300.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-16883708-4	chr6	16883212	16884212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 1 of 6)	MLT1D|LTR|ERVL-MaLR	14729.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-52431675-4	chr5	52431148	52432148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256059, intron 3 of 11)	intron (NM_001256059, intron 3 of 11)	-9511.0	NR_152197	100041805.0	Mm.417070	NR_152197		Gm3519	Gm43683	predicted gene 3519	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-65242019-4	chr13	65241519	65242519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-36303.0	NM_175290	97895.0	Mm.315815	NM_175290	ENSMUSG00000032999	Nlrp4f	C330026N02Rik|C86045|Nalp-kappa|Nalp4f	NLR family, pyrin domain containing 4F	protein-coding	14.0	36.0	37.0	5.5	29.0	18.5
Merged-chr18-34506200-7	chr18	34505656	34506656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146084, intron 1 of 20)	intron (NM_146084, intron 1 of 20)	667.0	NM_146084	225358.0	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	59.5	132.0	114.5	37.0	69.5	63.5
Merged-chr7-125541109-4	chr7	125540589	125541589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-11193.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	31.0	35.5	60.0	25.0	27.5	46.0
Merged-chr7-5013480-2	chr7	5012980	5013980	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110330)	promoter-TSS (NM_001110330)	17.0	NM_001360243	23877.0	Mm.38911	NM_011813	ENSMUSG00000061374	Fiz1	AI790204|mFLJ00416	Flt3 interacting zinc finger protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-74531768-4	chr5	74531276	74532276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178672)	promoter-TSS (NM_178672)	-34.0	NM_001114660	212986.0	Mm.134147	NM_178672	ENSMUSG00000062110	Scfd2	E430013M20Rik|STXBP1L1	Sec1 family domain containing 2	protein-coding	8.5	26.5	6.0	7.0	21.0	8.0
Merged-chr5-103754085-4	chr5	103753593	103754593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080798)	promoter-TSS (NM_001080798)	-69.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135967155-2	chr5	135966655	135967655	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160366, intron 4 of 10)	B3|SINE|B2	7321.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	0.5	0.0	0.0	0.5	0.0	0.0
Merged-chr8-13601283-4	chr8	13600792	13601792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 4 of 23)	L1MC|LINE|L1	-38831.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114766692-4	chr5	114766224	114767224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077359, intron 3 of 18)	intron (NM_001077359, intron 3 of 18)	6767.0	NM_019834	26431.0	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20973887-4	chr9	20973388	20974388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010333, intron 1 of 1)	intron (NM_010333, intron 1 of 1)	2905.0	NM_010333	14739.0	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127070612-4	chr2	127070098	127071098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026678)	promoter-TSS (NM_026678)	-59.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	36.0	93.5	62.5	18.0	124.0	73.5
Merged-chr7-141460830-4	chr7	141460357	141461357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025103)	promoter-TSS (NM_001025103)	-237.0	NM_001025103	213573.0	Mm.386851	NM_001025103	ENSMUSG00000048200	Cracr2b	6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a	calcium release activated channel regulator 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115692181-4	chr11	115691661	115692661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	7373.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-41024420-4	chr8	41023942	41024942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_015457)	TTS (NR_015457)	6974.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	60.0	126.5	79.5	19.0	40.5	39.5
Merged-chr18-60752183-4	chr18	60751689	60752689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3524.0	NM_008306	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0.0	7.0	4.0	4.5	11.0	6.0
Merged-chr1-58713972-2	chr1	58713472	58714472	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_149258)	TTS (NR_149258)	686.0	NM_001355056	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139131825-1	chr4	139131325	139132325	+	1000.0	f1_balb.idr	promoter-TSS (NR_033745)	promoter-TSS (NR_033745)	-712.0	NM_001163006	433771.0	Mm.305990	NM_001163006	ENSMUSG00000050608	Minos1	2310028O11Rik	mitochondrial inner membrane organizing system 1	protein-coding	7.0	18.0	6.5	1.0	14.0	3.0
Merged-chr10-21376904-3	chr10	21376404	21377404	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178713)	promoter-TSS (NM_178713)	-396.0	NM_178713	237320.0	Mm.90181	NM_178713	ENSMUSG00000037542	Aldh8a1	Raldh4	aldehyde dehydrogenase 8 family, member A1	protein-coding	3.0	3.5	1.0	0.5	0.5	0.0
Merged-chr4-137993409-4	chr4	137992903	137993903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172703)	promoter-TSS (NM_172703)	-53.0	NM_001256198	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	46.0	82.0	53.5	40.5	116.5	69.0
Merged-chr15-100126885-4	chr15	100126386	100127386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 2 of 37)	intron (NM_001159361, intron 2 of 37)	-27510.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-37011720-4	chr16	37011201	37012201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159369)	promoter-TSS (NM_001159369)	-85.0	NM_029977	77782.0	Mm.259114	NM_029977	ENSMUSG00000034206	Polq	A430110D14Rik	polymerase (DNA directed), theta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121830379-2	chr5	121829879	121830879	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001306128, intron 1 of 7)	B1_Mm|SINE|Alu	5725.0	NM_001306126	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84577402-4	chr10	84576885	84577885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146008, intron 1 of 9)	CpG	438.0	NM_146008	216198.0	Mm.296142	NM_146008	ENSMUSG00000020034	Tcp11l2	E430026E19Rik	t-complex 11 (mouse) like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-66213941-2	chr2	66213441	66214441	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001047604, intron 19 of 28)	RSINE1|SINE|B4	42676.0	NM_001047604	73668.0	Mm.250868	NM_001047604	ENSMUSG00000034848	Ttc21b	2410066K11Rik|Thm1|aln|mKIAA1992	tetratricopeptide repeat domain 21B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53441324-4	chr4	53440821	53441821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133891, intron 1 of 15)	intron (NM_133891, intron 1 of 15)	908.0	NM_133891	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	4.5	14.5	4.0	3.0	6.5	6.5
Merged-chr10-111507152-3	chr10	111506667	111507667	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009344, exon 1 of 2)	exon (NM_009344, exon 1 of 2)	881.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50378503-4	chr11	50377997	50378997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347487, intron 2 of 12)	CpG-1904	778.0	NM_001347487	59013.0	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-179434935-4	chr1	179434409	179435409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027188, intron 1 of 11)	intron (NM_027188, intron 1 of 11)	83132.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100847215-2	chr7	100846632	100847632	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177073, exon 11 of 11)	3' UTR (NM_177073, exon 11 of 11)	16281.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0.0	3.5	3.0	3.0	1.0	9.0
Merged-chr13-113871065-2	chr13	113870565	113871565	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	76557.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-52307790-4	chr12	52307298	52308298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029760, intron 10 of 10)	intron (NM_029760, intron 10 of 10)	172811.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	41.5	104.0	56.0	44.5	125.0	65.5
Merged-chr13-41230499-4	chr13	41229995	41230995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H1|LTR|ERVL-MaLR	-10092.0	NM_019423	54326.0	Mm.2567	NM_019423	ENSMUSG00000021364	Elovl2	AI317360|Ssc2	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90433621-4	chr3	90433141	90434141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145540)	promoter-TSS (NM_145540)	-5.0	NM_178876	229543.0	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	16.5	15.5	11.5	11.5	16.5	10.0
Merged-chr13-37959459-4	chr13	37958964	37959964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34744.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	55.0	226.0	139.5	63.0	163.5	156.5
Merged-chr11-75532069-4	chr11	75531561	75532561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199283)	promoter-TSS (NM_001199283)	-51.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145110842-4	chr7	145110349	145111349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97270.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	258.0	629.0	448.0	237.5	609.0	473.5
Merged-chr6-71271561-4	chr6	71271050	71272050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145568)	promoter-TSS (NM_145568)	-121.0	NR_106192	102465900.0		NR_106192	ENSMUSG00000098623	Mir8112	Gm27739|mmu-mir-8112	microRNA 8112	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-65343745-4	chr14	65343204	65344204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-14972.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	60.5	90.0	82.5	24.0	71.5	57.0
Merged-chr18-70622549-4	chr18	70622056	70623056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010773, intron 5 of 6)	intron (NM_010773, intron 5 of 6)	54264.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57902726-4	chr16	57902225	57903225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147988.0	NM_007739	12837.0	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116513088-4	chr3	116512583	116513583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357344)	promoter-TSS (NM_001357344)	13.0	NM_010022	13171.0	Mm.3636	NM_010022	ENSMUSG00000000340	Dbt	BCKAD-E2|D3Wsu60e	dihydrolipoamide branched chain transacylase E2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17070157-4	chr16	17069649	17070649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291053)	promoter-TSS (NM_001291053)	10.0	NM_001291047	106369.0	Mm.237941	NM_023249	ENSMUSG00000022773	Ypel1	0610009L05Rik|1700016N17Rik|1700019O22Rik|4921520K19Rik|4930511F14Rik|AV118478|DGL-1|Dgl1|Ppil2|mdgl-1	yippee like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154928995-4	chr4	154928485	154929485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178931)	promoter-TSS (NM_178931)	-908.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	28.5	168.5	73.0	37.0	109.0	76.5
Merged-chr6-50306838-4	chr6	50306351	50307351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027881, intron 18 of 21)	intron (NM_027881, intron 18 of 21)	-45082.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	3.5	1.0	3.0	3.5	1.0	3.0
Merged-chr1-181150945-4	chr1	181150434	181151434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030131)	promoter-TSS (NM_030131)	3.0	NM_030131	98417.0	Mm.38229	NM_030131	ENSMUSG00000062169	Cnih4	AI647760|AW050376|CNIH-4|D530030D03Rik|E430023H19Rik|HSPC163	cornichon family AMPA receptor auxiliary protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-68873280-4	chr2	68872791	68873791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	intron (NM_001347161, intron 1 of 10)	11850.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-113635384-4	chr8	113634865	113635865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173015)	promoter-TSS (NM_173015)	-221.0	NM_001048143	270096.0	Mm.74689	NM_173015	ENSMUSG00000078908	Mon1b	5031407H10|5033413H12Rik	MON1 homolog B, secretory traffciking associated	protein-coding	78.0	152.0	81.5	27.5	118.5	77.5
Merged-chr18-78142845-4	chr18	78142356	78143356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001171011)	promoter-TSS (NM_001171011)	-737.0	NM_001171011	108052.0	Mm.33832	NM_028122	ENSMUSG00000059336	Slc14a1	2610507K20Rik|3021401A05Rik|UT-B|Utb1	solute carrier family 14 (urea transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-36552601-4	chr3	36552094	36553094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019393)	promoter-TSS (NM_019393)	-12.0	NM_019393	50911.0	Mm.116711	NM_019393	ENSMUSG00000027714	Exosc9	PM/Scl-75|Pmscl1|RRP45|p5|p6	exosome component 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-104958380-4	chr5	104957877	104958877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030239, intron 10 of 15)	intron (NM_030239, intron 10 of 15)	24340.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	7.0	65.0	24.0	16.5	43.0	29.5
Merged-chr13-69534826-4	chr13	69534335	69535335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001169131)	promoter-TSS (NM_001169131)	-971.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	85.0	410.0	276.0	132.0	453.0	353.5
Merged-chr1-191281368-4	chr1	191280856	191281856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36762.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	53.0	188.5	103.0	104.5	161.5	94.0
Merged-chr12-54519536-4	chr12	54519037	54520037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	126475.0	NR_035439	100316682.0		NR_035439	ENSMUSG00000106344	Mir1892	Mirn1892|mir-1892|mmu-mir-1892	microRNA 1892	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91398755-1	chr16	91398255	91399255	+	1000.0	f0_c57.idr	intron (NM_001347258, intron 7 of 7)	intron (NM_001347258, intron 7 of 7)	-7480.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-76139315-4	chr5	76138809	76139809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020611)	promoter-TSS (NM_020611)	-964.0	NM_020611	57357.0	Mm.289446	NM_020611	ENSMUSG00000029233	Srd5a3	1110025P14Rik|A430076C09|AV364670|AW987574|D730040M03Rik|H5ar|S5AR 3|Srd5a2l	steroid 5 alpha-reductase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23306460-4	chr11	23305983	23306983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190401)	promoter-TSS (NM_001190401)	-412.0	NM_001190401	17847.0	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-39964069-4	chr15	39963576	39964576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045719, exon 2 of 3)	non-coding (NR_045719, exon 2 of 3)	1427.0	NR_045719	105976.0	Mm.394885	NR_045719		AU022793	-	expressed sequence AU022793	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-72260879-4	chr2	72260332	72261332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-24805.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34904285-4	chr8	34903800	34904800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 3 of 26)	MER90a|LTR|ERV1	61390.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	11.0	22.0	22.5	11.5	14.5	36.5
Merged-chr11-116138930-4	chr11	116138426	116139426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024177)	promoter-TSS (NM_024177)	-58.0	NM_024177	60441.0	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58749306-4	chr15	58748822	58749822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74105.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111444288-4	chr12	111443770	111444770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009396, intron 1 of 11)	intron (NM_009396, intron 1 of 11)	1609.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67391343-4	chr18	67390828	67391828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026473, exon 2 of 4)	exon (NM_026473, exon 2 of 4)	597.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	72.5	102.0	97.0	76.5	145.0	134.0
Merged-chr2-70877906-4	chr2	70877416	70878416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52436.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93175499-4	chr10	93174989	93175989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146239, intron 1 of 16)	L1MC3|LINE|L1	12704.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	33.5	44.5	42.0	47.0	84.0	30.0
Merged-chr12-82400098-2	chr12	82399598	82400598	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 12 of 23)	intron (NM_001167983, intron 12 of 23)	88749.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82870263-4	chr11	82869762	82870762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164569, intron 1 of 7)	intron (NM_001164569, intron 1 of 7)	482.0	NM_001164570	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-112493258-4	chr2	112492744	112493744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028844, intron 1 of 5)	CpG	280.0	NM_028844	74268.0	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-39544388-4	chr7	39543907	39544907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26641.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	65.0	205.5	164.0	54.0	105.0	117.0
Merged-chr10-53629497-4	chr10	53629022	53630022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027830, intron 2 of 13)	CpG	917.0	NM_027830	71567.0	Mm.278221	NM_027830	ENSMUSG00000058298	Mcm9	9030408O17Rik|Gm235|Mcmdc1	minichromosome maintenance 9 homologous recombination repair factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120743752-4	chr8	120743245	120744245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008320, exon 3 of 9)	exon (NM_008320, exon 3 of 9)	5106.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21757756-4	chr14	21757264	21758264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359953, intron 1 of 5)	(T)n|Simple_repeat|Simple_repeat	6212.0	NM_001359953	67630.0	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	62.0	176.5	166.0	48.5	163.0	97.5
Merged-chr9-56108353-4	chr9	56107842	56108842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	18366.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-138141430-4	chr6	138140914	138141914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361309)	promoter-TSS (NM_001361309)	-173.0	NM_001347489	56615.0	Mm.14796	NM_019946	ENSMUSG00000008540	Mgst1	1500002K10Rik|Gst	microsomal glutathione S-transferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95193208-4	chr4	95192709	95193709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140987.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45889553-2	chr13	45889053	45890053	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	75438.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44929742-4	chr7	44929222	44930222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007458)	promoter-TSS (NM_007458)	-232.0	NM_001077264	11771.0	Mm.6877	NM_007458	ENSMUSG00000060279	Ap2a1	Adtaa	adaptor-related protein complex 2, alpha 1 subunit	protein-coding	0.0	16.5	35.0	7.5	40.0	24.5
Merged-chr7-43392558-4	chr7	43392076	43393076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-15704.0	NM_172900	243958.0	Mm.24444	NM_172900	ENSMUSG00000030468	Siglecg	9830164H23|A630096C01Rik|Siglec-G|Siglec10|mSiglec-G	sialic acid binding Ig-like lectin G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-35932866-4	chr3	35932442	35933442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205362)	promoter-TSS (NM_001205362)	24.0	NM_001205361	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117041617-4	chr4	117041125	117042125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111277, intron 3 of 11)	intron (NM_001111277, intron 3 of 11)	22223.0	NM_001111277	108067.0	Mm.34612	NM_175135	ENSMUSG00000028683	Eif2b3	1190002P15Rik	eukaryotic translation initiation factor 2B, subunit 3	protein-coding	37.5	86.5	63.0	38.5	87.0	65.5
Merged-chr5-123014950-4	chr5	123014457	123015457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175423)	promoter-TSS (NM_175423)	-117.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4843305-4	chr12	4842771	4843771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173416)	promoter-TSS (NM_173416)	-32.0	NM_173416	238037.0	Mm.146087	NM_173416	ENSMUSG00000051721	Wdcp	A430092C04	WD repeat and coiled coil containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-75961670-4	chr16	75961150	75962150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39134.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34871023-4	chr2	34870504	34871504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080554)	promoter-TSS (NM_080554)	-42.0	NM_080554	66998.0	Mm.270632	NM_080554	ENSMUSG00000026869	Psmd5	1500032A03Rik|AW475925|S5b|W91691|mKIAA0072	proteasome (prosome, macropain) 26S subunit, non-ATPase, 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-110250876-6	chr3	110250308	110251308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_024139, exon 1 of 2)	non-coding (NR_024139, exon 1 of 2)	191.0	NM_178891	99890.0	Mm.36115	NM_178891	ENSMUSG00000049300	Prmt6	AW124876|BB233495|Hrmt1l6	protein arginine N-methyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113124955-4	chr12	113124480	113125480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346696, intron 7 of 19)	intron (NM_001346696, intron 7 of 19)	-15256.0	NM_024223	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43434264-2	chr4	43433764	43434764	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5130.0	NM_001162381	329831.0	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr10-127291258-1	chr10	127290758	127291758	+	1000.0	f0_balb.idr	intron (NM_001290183, intron 1 of 2)	intron (NM_001290183, intron 1 of 2)	465.0	NM_001290183	13198.0	Mm.110220	NM_007837	ENSMUSG00000025408	Ddit3	CHOP-10|CHOP10|chop|gadd153	DNA-damage inducible transcript 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-154288830-4	chr3	154288331	154289331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41729.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21180039-4	chr19	21179520	21180520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	75310.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121371732-4	chr9	121371240	121372240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357973, intron 1 of 5)	intron (NM_001357973, intron 1 of 5)	4782.0	NM_175114	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75222782-4	chr10	75222286	75223286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145826, intron 2 of 18)	intron (NM_001145826, intron 2 of 18)	10396.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135272909-4	chr4	135272417	135273417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013885)	promoter-TSS (NM_013885)	-157.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77264316-2	chr10	77263816	77264816	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030262, intron 4 of 8)	intron (NM_030262, intron 4 of 8)	5016.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11473244-4	chr8	11472761	11473761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-4668.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132510548-4	chr4	132510040	132511040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144907)	promoter-TSS (NM_144907)	-84.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22313454-4	chr9	22312958	22313958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5820.0	NM_145612	235050.0	Mm.306038	NM_145612	ENSMUSG00000066829	Zfp810	BC005471	zinc finger protein 810	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57700318-2	chr9	57699818	57700818	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009992, exon 2 of 7)	exon (NM_009992, exon 2 of 7)	2705.0	NM_001136059	13076.0	Mm.14089	NM_009992	ENSMUSG00000032315	Cyp1a1	AHH|AHRR|CP11|CYPIA1|P450-1	cytochrome P450, family 1, subfamily a, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69682047-4	chr11	69681541	69682541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163571)	promoter-TSS (NM_001163571)	43.0	NM_001163571	80886.0	Mm.284592	NM_030702	ENSMUSG00000005204	Senp3	AA408656|Smt3ip|Smt3ip1	SUMO/sentrin specific peptidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34887536-4	chr18	34887036	34888036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	26329.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132252745-4	chr2	132252267	132253267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011045, intron 1 of 5)	CpG	413.0	NM_011045	18538.0	Mm.7141	NM_011045	ENSMUSG00000027342	Pcna	-	proliferating cell nuclear antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39549070-2	chr6	39548570	39549570	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172477, intron 1 of 18)	ID|SINE|ID	8764.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153544052-4	chr2	153543575	153544575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14104.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	54.5	162.0	127.5	75.0	148.5	134.0
Merged-chr13-107857212-4	chr13	107856711	107857711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	32853.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	57.5	80.5	68.5	16.0	66.5	57.0
Merged-chr13-5875635-4	chr13	5875161	5876161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14172.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92058248-4	chr16	92057735	92058735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017391)	promoter-TSS (NM_017391)	-87.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117684892-4	chr10	117684390	117685390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027468, exon 9 of 9)	3' UTR (NM_027468, exon 9 of 9)	25868.0	NM_010786	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52268348-4	chr3	52267821	52268821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019739)	promoter-TSS (NM_019739)	-16.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38534804-4	chr6	38534294	38535294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025363)	promoter-TSS (NM_025363)	-67.0	NM_025363	66117.0	Mm.158971	NM_025363	ENSMUSG00000019689	Fmc1	1110001J03Rik	formation of mitochondrial complex V assembly factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103046946-4	chr14	103046467	103047467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008392)	promoter-TSS (NM_008392)	-45.0	NM_008392	16365.0	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11589026-4	chr2	11588524	11589524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_152824, exon 8 of 12)	exon (NM_152824, exon 8 of 12)	14175.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3189119-7	chr11	3188613	3189613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 1 of 32)	intron (NM_030207, intron 1 of 32)	4350.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80113082-4	chr12	80112618	80113618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007564)	promoter-TSS (NM_007564)	-105.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	3.5	23.0	16.5	4.5	26.0	14.0
Merged-chr7-144470790-4	chr7	144470286	144471286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007803, exon 1 of 18)	5' UTR (NM_007803, exon 1 of 18)	149.0	NM_007803	13043.0	Mm.205601	NM_007803	ENSMUSG00000031078	Cttn	1110020L01Rik|Ems1	cortactin	protein-coding	33.0	13.5	13.0	38.0	11.5	10.5
Merged-chr18-6767667-2	chr18	6767167	6768167	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181070, intron 1 of 6)	intron (NM_181070, intron 1 of 6)	2500.0	NM_001278447	19330.0	Mm.132802	NM_181070	ENSMUSG00000073639	Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-78237307-4	chr13	78236803	78237803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045195)	TTS (NR_045195)	-38430.0	NM_010151	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123926826-2	chr9	123926326	123927326	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41866.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102907701-4	chr14	102907201	102908201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	74931.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7557443-4	chr19	7556952	7557952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139269)	promoter-TSS (NM_139269)	-7.0	NM_139269	225845.0	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	AdPLA|C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75517400-4	chr10	75516908	75517908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175133)	promoter-TSS (NM_175133)	-27.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101907129-4	chr7	101906646	101907646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081679)	promoter-TSS (NM_001081679)	-787.0	NM_001081679	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87624997-2	chr1	87624497	87625497	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	4685.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98484121-4	chr15	98483604	98484604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1421.0	NM_010679	16770.0	Mm.5074	NM_010679	ENSMUSG00000022991	Lalba	AW208827|Lyzg	lactalbumin, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-111045020-1	chr5	111044520	111045520	+	1000.0	f1_balb.idr	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	40876.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	4.5	1.5	2.0	0.0	0.0	0.0
Merged-chr7-144587068-2	chr7	144586568	144587568	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4632.0	NM_010175	14082.0	Mm.5126	NM_010175	ENSMUSG00000031077	Fadd	Mort1/FADD	Fas (TNFRSF6)-associated via death domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111377199-2	chr12	111376699	111377699	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_183016, exon 1 of 37)	exon (NM_183016, exon 1 of 37)	519.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134731619-4	chr4	134731110	134732110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27320.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122260296-4	chr7	122259797	122260797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-28828.0	NM_001316672	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104339440-4	chr8	104338978	104339978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1116.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-63768862-2	chr5	63768362	63769362	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177006, intron 3 of 6)	intron (NM_177006, intron 3 of 6)	-43633.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3360189-4	chr12	3359688	3360688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4944.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-150601383-2	chr5	150600883	150601883	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001362416, exon 8 of 8)	3' UTR (NM_001362416, exon 8 of 8)	-6858.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46310164-2	chr8	46309664	46310664	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15493.0	NM_173789	234219.0	Mm.145631	NM_173789	ENSMUSG00000047171	Helt	A830086M02|Hesl|Heslike|Mgn|megane	helt bHLH transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-113751163-8	chr11	113750633	113751633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020006)	promoter-TSS (NM_020006)	27.0	NM_020006	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-4104517-4	chr5	4104015	4105015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_020010, exon 1 of 10)	5' UTR (NM_020010, exon 1 of 10)	182.0	NM_020010	13121.0	Mm.140158	NM_020010	ENSMUSG00000001467	Cyp51	AI426508|CYPLI|Cyp51a1|Ldm|P450-14DM|P450LI	cytochrome P450, family 51	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120617931-4	chr11	120617445	120618445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347615)	promoter-TSS (NM_001347615)	0.0	NM_001347615	68671.0	Mm.21439	NM_024229	ENSMUSG00000025137	Pcyt2	1110033E03Rik|ET	phosphate cytidylyltransferase 2, ethanolamine	protein-coding	0.0	10.0	6.0	0.0	3.0	8.5
Merged-chr19-34599486-4	chr19	34598978	34599978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110517)	promoter-TSS (NM_001110517)	-51.0	NM_001110517	667373.0	Mm.371956	NM_001101605	ENSMUSG00000079339	Ifit1bl1	Gm14446|Ifit1c	interferon induced protein with tetratricpeptide repeats 1B like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99561451-4	chr12	99560941	99561941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2400.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90129472-4	chr7	90128967	90129967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146194)	promoter-TSS (NM_146194)	7.0	NR_046006	78329.0	Mm.389940	NR_046006	ENSMUSG00000097162	2310010J17Rik	-	RIKEN cDNA 2310010J17 gene	ncRNA	15.0	17.5	15.5	12.0	4.5	13.5
Merged-chr9-7867616-2	chr9	7867116	7868116	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007464, intron 1 of 8)	MMERGLN-int|LTR|ERV1	5554.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122339765-7	chr6	122339300	122340300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073364)	promoter-TSS (NR_073364)	-143.0	NR_073364	13619.0	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-190928575-4	chr1	190928054	190929054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357131)	promoter-TSS (NM_001357131)	49.0	NM_021421	52477.0	Mm.289914	NM_021421	ENSMUSG00000026634	Angel2	2610307I21Rik|5730410O10Rik|AI845692|D1Ertd396e|D1Ertd654e	angel homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47730777-4	chr19	47730270	47731270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026377)	promoter-TSS (NM_026377)	-986.0	NM_026377	67788.0	Mm.181610	NM_026377	ENSMUSG00000025066	Sfr1	6330577E15Rik|Meir5	SWI5 dependent recombination repair 1	protein-coding	26.5	143.0	81.0	81.5	125.0	126.0
Merged-chr5-112324750-4	chr5	112324258	112325258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1611.0	NM_018783	54723.0	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	59.5	283.0	156.5	84.0	257.0	192.0
Merged-chr7-73606965-4	chr7	73606460	73607460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48565.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82541977-2	chr11	82541477	82542477	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91376.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152739553-8	chr2	152739067	152740067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	3316.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25828647-4	chr15	25828128	25829128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14670.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-81585382-4	chr18	81584870	81585870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	406710.0	NR_039589	100628596.0		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21468587-4	chr13	21468079	21469079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025719)	promoter-TSS (NM_025719)	-78.0	NM_025719	66707.0	Mm.116869	NM_025719	ENSMUSG00000059395	Nkapl	4921504I05Rik	NFKB activating protein-like	protein-coding	1.0	2.0	10.0	5.5	8.0	7.0
Merged-chr18-46598426-4	chr18	46597921	46598921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025698)	promoter-TSS (NM_025698)	717.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-149185030-4	chr5	149184509	149185509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001115151, intron 1 of 8)	CpG	449.0	NM_001359957	231915.0	Mm.29402	NM_001013378	ENSMUSG00000041264	Uspl1	E430026A01Rik	ubiquitin specific peptidase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-9545318-4	chr1	9544827	9545827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021511)	promoter-TSS (NM_021511)	-81.0	NM_021511	59014.0	Mm.29061	NM_021511	ENSMUSG00000061024	Rrs1	5730466A07Rik|AA415037|D1Ertd701e|Rrr	ribosome biogenesis regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3466953-2	chr8	3466453	3467453	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026951, intron 1 of 4)	intron (NM_026951, intron 1 of 4)	695.0	NM_026951	69129.0	Mm.45279	NM_026951	ENSMUSG00000069633	Pex11g	1810022F11Rik|1810049N02Rik|Pex11c|Pex11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35132235-4	chr2	35131744	35132744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290635)	promoter-TSS (NM_001290635)	10.0	NM_001290635	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12171292-4	chr17	12170717	12171717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026644, intron 2 of 8)	intron (NM_026644, intron 2 of 8)	51933.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	2.5	1.5	1.0	5.0	4.0	1.5
Merged-chr3-149326897-4	chr3	149326387	149327387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52150.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39916314-4	chr1	39915818	39916818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 2 of 29)	ORR1B2-int|LTR|ERVL-MaLR	15405.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91721603-2	chr6	91721103	91722103	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	37536.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11458353-4	chr8	11457833	11458833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-19596.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70489415-1	chr11	70488915	70489915	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-15859.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113114350-3	chr5	113113860	113114860	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172884, intron 1 of 7)	intron (NM_172884, intron 1 of 7)	24225.0	NM_001347397	243219.0	Mm.160131	NM_172884	ENSMUSG00000051339	2900026A02Rik	8430408O14Rik|A530094D01|AW539426|Gm449|Kiaa1671|mKIAA1671	RIKEN cDNA 2900026A02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149790047-4	chr4	149789549	149790549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15782.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-46064634-2	chr10	46064134	46065134	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-180114.0	NR_028274	100302593.0		NR_028274	ENSMUSG00000095118	Snord14d	Gm23710	small nucleolar RNA, C/D box 14D	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33798053-2	chr16	33797553	33798553	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010739, intron 2 of 12)	intron (NM_010739, intron 2 of 12)	4016.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-3011089-2	chr3	3010528	3011528	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-497002.0	NM_013920	30942.0	Mm.330897	NM_013920	ENSMUSG00000017688	Hnf4g	NR2A2	hepatocyte nuclear factor 4, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114131181-4	chr5	114130698	114131698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011677)	promoter-TSS (NM_011677)	42.0	NM_011677	22256.0	Mm.1393	NM_011677	ENSMUSG00000029591	Ung	UNG1|UNG2	uracil DNA glycosylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-101073824-4	chr9	101073348	101074348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001100451)	promoter-TSS (NM_001100451)	-914.0	NM_001100451	77853.0	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	MSL complex subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128888944-4	chr6	128888442	128889442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289706, intron 2 of 6)	intron (NM_001289706, intron 2 of 6)	1355.0	NM_001289707	93675.0	Mm.391513	NM_020257	ENSMUSG00000030365	Clec2i	Clr-g|Clrg|Dcl1|LCL-1|OCILrP2	C-type lectin domain family 2, member i	protein-coding	69.0	216.0	211.0	102.0	298.5	217.5
Merged-chr16-4678316-4	chr16	4677827	4678827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030205, intron 1 of 27)	intron (NM_030205, intron 1 of 27)	1393.0	NM_030205	78885.0	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84969553-4	chr8	84969062	84970062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011563)	promoter-TSS (NM_011563)	-60.0	NM_001317385	21672.0	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	17.0	64.5	21.0	13.5	21.0	21.0
Merged-chr7-119896029-7	chr7	119895528	119896528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173408)	promoter-TSS (NM_173408)	167.0	NM_001285960	73919.0	Mm.46381	NM_029610	ENSMUSG00000030922	Lyrm1	1110065L10Rik|2310004B22Rik|4930404J24Rik	LYR motif containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119835752-4	chr13	119835257	119836257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5540.0	NM_001001449	380878.0	Mm.327311	NM_001001449	ENSMUSG00000094237	AF067063	-	cDNA sequence AF067063	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59051272-4	chr15	59050780	59051780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	L1M2|LINE|L1	30746.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9231624-4	chr13	9231133	9232133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-44892.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-63616964-4	chr15	63616458	63617458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137350.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52955515-4	chr6	52955017	52956017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 1 of 4)	intron (NM_173406, intron 1 of 4)	-45897.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	2.0	4.0	4.5	2.0	12.5	2.5
Merged-chr15-57693960-4	chr15	57693493	57694493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199449)	promoter-TSS (NM_199449)	-674.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139460621-4	chr5	139460119	139461119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028469)	promoter-TSS (NM_028469)	-85.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144897404-4	chr3	144896912	144897912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1401.0	NR_126537	622139.0	Mm.447150	NM_001039222	ENSMUSG00000074196	Clca4c-ps	Clca4c|EG622139|Gm18718|Gm6289	chloride channel accessory 4C, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55895748-4	chr13	55895290	55896290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64365.0	NM_011097	18740.0	Mm.135195	NM_011097	ENSMUSG00000021506	Pitx1	Bft|P-OTX|Potx|Ptx1	paired-like homeodomain transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97799607-4	chr11	97799100	97800100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010688)	promoter-TSS (NM_010688)	35.0	NM_010688	16796.0	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	4.5	16.5	4.5	3.5	17.5	2.0
Merged-chr3-41408559-4	chr3	41408068	41409068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84631.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128013298-2	chr7	128012798	128013798	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8920.0	NM_001079932	434246.0	Mm.389924	NM_001079932	ENSMUSG00000042828	Trim72	BC067209|MG53	tripartite motif-containing 72	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76889699-4	chr11	76889204	76890204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR35B_MM|LTR|ERVL	-14841.0	NM_025655	66601.0	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-12053484-4	chr2	12052994	12053994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-247752.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-129429591-4	chr3	129429075	129430075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4098.0	NR_033594	435755.0	Mm.430561	NR_033594	ENSMUSG00000105712	Pou5f1-rs4	EG435755|Gm5712|Oct4P1|Otf3-rs4|Otf3d	POU domain, class 5, transcription factor 1, related sequence 4	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31417163-4	chr3	31416681	31417681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106862.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-92722609-3	chr13	92722114	92723114	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72204.0	NM_011582	21828.0	Mm.20865	NM_011582	ENSMUSG00000021702	Thbs4	TSP4	thrombospondin 4	protein-coding	6.5	7.5	17.0	23.5	1.5	2.0
Merged-chr12-59061388-4	chr12	59060868	59061868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_030057, exon 1 of 6)	5' UTR (NM_030057, exon 1 of 6)	104.0	NM_001306218	78232.0	Mm.290070	NM_030057	ENSMUSG00000020993	Trappc6b	5830498C14Rik|C79212	trafficking protein particle complex 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63031577-4	chr9	63031078	63032078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50699.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74702098-2	chr1	74701598	74702598	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11437.0	NM_024264	104086.0	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34778438-4	chr11	34777936	34778936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 1 of 51)	intron (NM_033374, intron 1 of 51)	5469.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86472402-4	chr6	86471920	86472920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131125, exon 5 of 5)	non-coding (NR_131125, exon 5 of 5)	8410.0	NR_131125	320486.0	Mm.391625	NR_131125	ENSMUSG00000085589	A430078I02Rik	T25621	RIKEN cDNA A430078I02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-104465266-4	chr7	104464783	104465783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009099)	promoter-TSS (NM_009099)	-90.0	NM_009099	20128.0	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	22.0	48.5	30.0	19.5	36.5	34.0
Merged-chr2-129360870-3	chr2	129360405	129361405	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8997.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	32.5	79.5	48.0	51.5	105.0	81.5
Merged-chr10-16650064-2	chr10	16649564	16650564	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	445718.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144204888-4	chr2	144204402	144205402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15612.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102266718-4	chr7	102266191	102267191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1133.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	26.0	76.5	52.5	26.0	66.0	53.5
Merged-chr5-124483414-4	chr5	124482904	124483904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029532, intron 1 of 1)	CpG	249.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93083434-4	chr10	93082937	93083937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1841.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	8.0	16.0	5.5	6.0	14.0	7.5
Merged-chr17-27840019-4	chr17	27839518	27840518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011432)	promoter-TSS (NM_011432)	-69.0	NM_011432	20630.0	Mm.103949	NM_011432	ENSMUSG00000024217	Snrpc	Snrp1c|U1-C|U1C	U1 small nuclear ribonucleoprotein C	protein-coding	39.5	50.0	55.0	24.0	59.0	44.0
Merged-chr14-20765909-6	chr14	20765416	20766416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001039138, exon 7 of 20)	exon (NM_001039138, exon 7 of 20)	28172.0	NM_001039138	12325.0	Mm.235182	NM_178597	ENSMUSG00000021820	Camk2g	Camkg	calcium/calmodulin-dependent protein kinase II gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-54807817-4	chr3	54807319	54808319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133231)	promoter-TSS (NM_133231)	-28.0	NM_133231	170767.0	Mm.185735	NM_133231	ENSMUSG00000036615	Rfxap	5730495K23Rik	regulatory factor X-associated protein	protein-coding	0.0	4.0	0.0	0.0	0.0	0.0
Merged-chr17-26660469-2	chr17	26659969	26660969	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15927.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123015594-2	chr5	123015094	123016094	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175423, intron 1 of 1)	CpG	520.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19092857-2	chr7	19092357	19093357	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_032418, intron 14 of 14)	intron (NM_032418, intron 14 of 14)	-1687.0	NM_011383	20475.0	Mm.3410	NM_011383	ENSMUSG00000040841	Six5	Dmahp|MDMAHP|TrexBF	sine oculis-related homeobox 5	protein-coding	0.0	9.5	1.0	0.0	7.0	1.0
Merged-chr8-26690142-4	chr8	26689666	26690666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134257.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	40.0	63.5	48.5	8.5	22.0	22.0
Merged-chr16-78217091-4	chr16	78216587	78217587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38367.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60795311-4	chr18	60794808	60795808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8541.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	1.0	0.0	6.5	15.5	1.5	2.5
Merged-chr9-114844461-4	chr9	114843900	114844900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027294)	promoter-TSS (NM_027294)	-248.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	24.0	50.5	51.5	44.0	110.5	107.0
Merged-chr10-67695004-4	chr10	67694509	67695509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123050.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95887333-4	chr8	95886811	95887811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010325, intron 1 of 9)	intron (NM_010325, intron 1 of 9)	1054.0	NM_010325	14719.0	Mm.230169	NM_010325	ENSMUSG00000031672	Got2	AL022787|FABP-pm|Got-2|Kyat4|mAspAT	glutamatic-oxaloacetic transaminase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112321285-1	chr5	112320785	112321785	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-5084.0	NM_018783	54723.0	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	8.5	8.0	5.0	0.5	1.5	4.0
Merged-chr10-125749218-4	chr10	125748733	125749733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-216986.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94909549-4	chr10	94909069	94910069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 3 of 30)	intron (NM_018797, intron 3 of 30)	35009.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19257573-4	chr7	19257095	19258095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_104069, exon 11 of 11)	non-coding (NR_104069, exon 11 of 11)	14259.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77756278-4	chr9	77755793	77756793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151778, intron 1 of 16)	intron (NR_151778, intron 1 of 16)	1758.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	2.0	0.5	0.5	3.5	0.0	0.0
Merged-chr13-52059933-4	chr13	52059443	52060443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-36798.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8577677-2	chr11	8577133	8578133	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 4 of 30)	B3|SINE|B2	86902.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	13.5	10.5	4.5	6.0	14.0	9.5
Merged-chr1-152902437-1	chr1	152901937	152902937	+	1000.0	f0_c57.idr	intron (NM_001160257, intron 1 of 23)	CpG	208.0	NM_001359257	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67345679-4	chr15	67345165	67346165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045140, intron 7 of 8)	RMER19A|LTR|ERVK	118896.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	9.0	22.0	13.5	5.5	39.5	11.5
Merged-chr2-112454980-4	chr2	112454494	112455494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133749)	promoter-TSS (NM_133749)	-31.0	NM_133749	73024.0	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	64.0	75.5	102.5	48.0	126.5	83.5
Merged-chr16-14350944-4	chr16	14350440	14351440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-10618.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-126597124-5	chr3	126596574	126597574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001293665, exon 1 of 20)	5' UTR (NM_001293665, exon 1 of 20)	123.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	95.5	299.5	218.0	78.5	245.0	174.5
Merged-chr7-35729832-4	chr7	35729333	35730333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178704, intron 3 of 18)	intron (NM_178704, intron 3 of 18)	24621.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	1.0	0.5	1.0	1.5	5.5	7.0
Merged-chr10-45048835-4	chr10	45048338	45049338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18376.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61107790-4	chr18	61107316	61108316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 2 of 21)	intron (NM_001037859, intron 2 of 21)	2244.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46745693-4	chr8	46745198	46746198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	5953.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68514131-4	chr11	68513623	68514623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004435, intron 1 of 19)	MurERV4-int|LTR|ERVK	11104.0	NR_126154	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-58912743-4	chr4	58912227	58913227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172381)	promoter-TSS (NM_172381)	22.0	NM_172381	230249.0	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|Ecpas|mKIAA0368	expressed sequence AI314180	protein-coding	24.0	63.0	71.0	19.0	55.0	56.0
Merged-chr5-136170714-4	chr5	136170245	136171245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178751)	promoter-TSS (NM_178751)	-89.0	NM_178751	269717.0	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148489110-4	chr5	148488614	148489614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4A|LINE|L1	62559.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-13007808-4	chr17	13007297	13008297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013671)	promoter-TSS (NM_013671)	-42.0	NM_013671	20656.0	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141658971-4	chr4	141658467	141659467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	5148.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	59.5	124.5	78.0	55.5	63.0	85.5
Merged-chr7-129759982-4	chr7	129759497	129760497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	168134.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131546205-2	chr2	131545705	131546705	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013460, exon 2 of 2)	exon (NM_013460, exon 2 of 2)	16080.0	NM_013460	11550.0	Mm.389380	NM_013460	ENSMUSG00000027335	Adra1d	Adra-1|Adra1|Adra1a|Gpcr8|Spr8|[a]1d|alpha1D-AR	adrenergic receptor, alpha 1d	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147431163-4	chr5	147430681	147431681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028291, intron 1 of 18)	CpG	1025.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	5.0	12.5	8.0	8.5	15.5	6.5
Merged-chr10-51459780-4	chr10	51459245	51460245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20867.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85339453-4	chr12	85338966	85339966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145138)	promoter-TSS (NM_145138)	-104.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78396416-4	chr10	78395915	78396915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12130.0	NR_105872	102465547.0		NR_105872	ENSMUSG00000098376	Mir6907	Gm27351|mmu-mir-6907	microRNA 6907	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81239390-2	chr10	81238890	81239890	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034895, intron 2 of 17)	intron (NM_001034895, intron 2 of 17)	6227.0	NM_001034895	103406.0	Mm.158783	NM_001034895	ENSMUSG00000034949	Zfr2	2010013I23Rik|9130206N08Rik|AW045600|mKIAA1086	zinc finger RNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-33652451-4	chr8	33651909	33652909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010344)	promoter-TSS (NM_010344)	-829.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	302.5	384.0	368.0	49.0	146.0	128.0
Merged-chr12-73286811-4	chr12	73286321	73287321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029580)	promoter-TSS (NM_029580)	-27.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	37.0	35.5	24.0	23.0	52.5	26.5
Merged-chr17-35821655-4	chr17	35821180	35822180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133662)	promoter-TSS (NM_133662)	-33.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	37.5	75.5	68.5	31.5	97.0	57.5
Merged-chr17-21650602-4	chr17	21650101	21651101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166497)	promoter-TSS (NM_001166497)	-10.0	NM_001166497	73229.0	Mm.296733	NM_001166497	ENSMUSG00000035868	Zfp983	3110052M02Rik|mszf57|mszf71	zinc finger protein 983	protein-coding	30.5	83.0	79.0	38.5	92.0	68.5
Merged-chr19-25002308-3	chr19	25001793	25002793	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 1 of 47)	MTE2a|LTR|ERVL-MaLR	2764.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	48.5	98.5	72.5	34.5	66.5	47.0
Merged-chr7-128312855-4	chr7	128312360	128313360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-14729.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36549414-4	chr5	36548926	36549926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	-18803.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	79.0	162.5	151.0	49.0	171.5	132.5
Merged-chr13-56611970-4	chr13	56611475	56612475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155548, intron 1 of 16)	intron (NR_155548, intron 1 of 16)	2389.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-69179378-4	chr17	69178876	69179876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	CT-rich|Low_complexity|Low_complexity	20020.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98836808-4	chr11	98836320	98837320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080925)	promoter-TSS (NM_001080925)	35.0	NM_001080925	268480.0	Mm.340766	NM_001080925	ENSMUSG00000038020	Rapgefl1	B230105J10	Rap guanine nucleotide exchange factor (GEF)-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165408014-4	chr2	165407516	165408516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054055, intron 12 of 12)	intron (NM_054055, intron 12 of 12)	-7622.0	NM_029021	74614.0	Mm.72179	NM_029021	ENSMUSG00000027670	Ocstamp	4833422F24Rik|OC-STAMP	osteoclast stimulatory transmembrane protein	protein-coding	0.0	2.0	3.5	2.0	13.0	3.0
Merged-chr3-130690069-2	chr3	130689569	130690569	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19375.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51560751-4	chr3	51560233	51561233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080793)	promoter-TSS (NM_080793)	90.0	NM_080793	73251.0	Mm.192111	NM_080793	ENSMUSG00000037111	Setd7	1600028F23Rik|H3K4MT|KMT7|Set7|Set7/9|mKIAA1717	SET domain containing (lysine methyltransferase) 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59584585-2	chr13	59584085	59585085	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030153)	promoter-TSS (NM_030153)	638.0	NR_045633	319469.0	Mm.437992	NR_045633	ENSMUSG00000021557	A230056J06Rik	-	RIKEN cDNA A230056J06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-14064402-2	chr13	14063902	14064902	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331176)	promoter-TSS (NM_001331176)	618.0	NM_198122	94246.0	Mm.439784	NM_194262	ENSMUSG00000039219	Arid4b	BCAA|BRCAA1|RBBP1L1|Rbp1l1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55754048-4	chr16	55753560	55754560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68078.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-53348577-4	chr10	53348140	53349140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001204983, exon 3 of 13)	exon (NM_001204983, exon 3 of 13)	10954.0	NM_001141927	18821.0	Mm.34145	NM_023129	ENSMUSG00000038583	Pln	Plb	phospholamban	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120054329-4	chr4	120053840	120054840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-106866.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57422281-4	chr16	57421802	57422802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	69025.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	17.5	48.0	47.5	29.5	40.5	62.5
Merged-chr16-17891792-4	chr16	17891313	17892313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010048)	promoter-TSS (NM_010048)	-85.0	NM_001109750	13356.0	Mm.254515	NM_010048	ENSMUSG00000003166	Dgcr2	9930034O06Rik|DGS-C|Dgsc|Idd|Lan|Sez12|mKIAA0163	DiGeorge syndrome critical region gene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44234211-4	chr9	44233724	44234724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007619)	promoter-TSS (NM_007619)	-178.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93462528-4	chr2	93462011	93463011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271461)	promoter-TSS (NM_001271461)	-9.0	NM_007656	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0.0	9.5	7.0	2.5	8.5	0.0
Merged-chr11-72490047-4	chr11	72489547	72490547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153060)	promoter-TSS (NM_153060)	-127.0	NM_153060	216892.0	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95738106-1	chr3	95737606	95738606	+	1000.0	f1_balb.idr	exon (NM_001252653, exon 3 of 11)	exon (NM_001252653, exon 3 of 11)	1463.0	NM_007899	13601.0	Mm.3433	NM_007899	ENSMUSG00000028108	Ecm1	AI663821|p85	extracellular matrix protein 1	protein-coding	0.0	0.0	2.0	0.0	1.0	1.0
Merged-chr5-103911214-4	chr5	103910719	103911719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359986)	promoter-TSS (NM_001359986)	40.0	NM_001359987	246293.0	Mm.179871	NM_178741	ENSMUSG00000029312	Klhl8	2310001P09Rik|D5Ertd431e	kelch-like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96619235-2	chr10	96618735	96619735	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007569, exon 2 of 2)	3' UTR (NM_007569, exon 2 of 2)	2234.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24172415-4	chr17	24171927	24172927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2749.0	NM_001361531	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	157.5	389.5	393.0	119.0	402.5	265.0
Merged-chr10-81184370-2	chr10	81183870	81184870	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190473, intron 2 of 8)	PB1D9|SINE|Alu	452.0	NM_007828	13144.0	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-75887378-4	chr16	75886859	75887859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023380, intron 2 of 7)	MTE2b|LTR|ERVL-MaLR	21907.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37715008-2	chr13	37714508	37715508	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111030.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	6.5	3.5	0.0	16.5	0.0	2.5
Merged-chr1-93343606-4	chr1	93343118	93344118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023200)	promoter-TSS (NM_023200)	-27.0	NM_023200	66385.0	Mm.88704	NM_023200	ENSMUSG00000026275	Ppp1r7	2310014J01Rik|SDS22	protein phosphatase 1, regulatory (inhibitor) subunit 7	protein-coding	2.0	10.0	10.5	4.5	1.0	2.0
Merged-chr11-70051575-2	chr11	70051075	70052075	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2549.0	NM_001291131	11889.0	Mm.6559	NM_009714	ENSMUSG00000020884	Asgr1	ASGPR1|Asgr|Asgr-1|HL-1	asialoglycoprotein receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64011951-4	chr7	64011435	64012435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73020.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-106696717-5	chr5	106696236	106697236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026856)	promoter-TSS (NM_026856)	94.0	NM_026856	52397.0	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-51768885-4	chr12	51768352	51769352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144788, exon 25 of 43)	exon (NM_144788, exon 25 of 43)	60684.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32775673-4	chr2	32775149	32776149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290567)	promoter-TSS (NM_001290567)	-16.0	NM_001290563	338348.0	Mm.475130	NM_177384	ENSMUSG00000039021	Ttc16	1200002K10Rik	tetratricopeptide repeat domain 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11300568-4	chr2	11300070	11301070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008859, exon 18 of 18)	3' UTR (NM_008859, exon 18 of 18)	-38919.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3291185-4	chr12	3290694	3291694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 1 of 5)	ORR1B1|LTR|ERVL-MaLR	18775.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23543964-2	chr13	23543464	23544464	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013548)	promoter-TSS (NM_013548)	-88.0	NM_013548	260423.0	Mm.221389	NM_013548	ENSMUSG00000100210	Hist1h3f	H3.2-221|Hist1	histone cluster 1, H3f	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12237089-4	chr18	12236592	12237592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008720)	promoter-TSS (NM_008720)	-706.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45085814-4	chr2	45085297	45086297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	24480.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117881122-4	chr11	117880629	117881629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7603.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4019388-4	chr19	4018902	4019902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6647.0	NM_133666	17995.0	Mm.29842	NM_133666	ENSMUSG00000037916	Ndufv1	CI-51kD	NADH dehydrogenase (ubiquinone) flavoprotein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95255033-4	chr8	95254526	95255526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195413, intron 25 of 32)	intron (NM_001195413, intron 25 of 32)	51559.0	NM_145601	333329.0	Mm.484049	NM_145601	ENSMUSG00000031789	Cngb1	Cngb1b|Garp2|Gm1959	cyclic nucleotide gated channel beta 1	protein-coding	0.5	8.0	4.0	0.5	7.0	4.5
Merged-chr5-36796818-4	chr5	36796314	36797314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026242)	promoter-TSS (NM_026242)	-60.0	NM_026242	67568.0	Mm.332336	NM_026242	ENSMUSG00000055302	Mrfap1	9130413I22Rik|AL022827|Pam14	Morf4 family associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108668395-2	chr6	108667895	108668895	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7461.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44520315-4	chr11	44519858	44520858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 1 of 5)	intron (NM_001166553, intron 1 of 5)	981.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	16.5	85.0	41.0	33.0	69.0	43.5
Merged-chr9-22468323-4	chr9	22467821	22468821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018739)	promoter-TSS (NM_018739)	35.0	NM_018739	55934.0	Mm.38235	NM_018739	ENSMUSG00000032239	Rp9	PAP-1|Rp9h	retinitis pigmentosa 9 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120567641-4	chr2	120567164	120568164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177793)	promoter-TSS (NM_001177793)	-7.0	NM_001177792	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	17.5	47.0	29.5	1.0	37.0	15.5
Merged-chr16-90445593-4	chr16	90445095	90446095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015755, intron 2 of 10)	intron (NM_015755, intron 2 of 10)	59198.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100832869-2	chr13	100832369	100833369	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022885, intron 1 of 15)	CpG	558.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40970981-4	chr4	40970486	40971486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290449)	promoter-TSS (NM_001290449)	43.0	NM_023739	74164.0	Mm.247456	NM_023739	ENSMUSG00000028423	Nfx1	1300017N15Rik|3000003M19Rik|NFX.1|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75190510-4	chr11	75190033	75191033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144491)	promoter-TSS (NM_144491)	-50.0	NM_144491	116905.0	Mm.41496	NM_144491	ENSMUSG00000078789	Dph1	2310011M22Rik|4930488F09Rik|AW551873|Dph2l1|Ovca1	diphthamide biosynthesis 1	protein-coding	5.0	2.0	0.5	10.5	4.0	7.5
Merged-chr13-23751107-4	chr13	23750613	23751613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175660)	promoter-TSS (NM_175660)	25.0	NM_175660	319172.0	Mm.423402	NM_175660	ENSMUSG00000061615	Hist1h2ab	H2A.1|H2a-53	histone cluster 1, H2ab	protein-coding	59.5	113.0	55.0	5.5	11.5	14.0
Merged-chr10-83101073-2	chr10	83100573	83101573	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021439, intron 2 of 2)	intron (NM_021439, intron 2 of 2)	115576.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-73597543-4	chr16	73597020	73598020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	744547.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-144981317-4	chr4	144980826	144981826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 68 of 69)	intron (NM_001276465, intron 68 of 69)	88189.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45049844-4	chr14	45049303	45050303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61692.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78928269-4	chr15	78927784	78928784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008495, intron 2 of 3)	intron (NM_008495, intron 2 of 3)	1559.0	NM_008495	16852.0	Mm.43831	NM_008495	ENSMUSG00000068220	Lgals1	AA410090|Gal-1|Galbp|L-14.5|L14|Lect14|galectin-1	lectin, galactose binding, soluble 1	protein-coding	3.0	26.0	16.0	1.0	15.0	5.5
Merged-chr11-95416173-4	chr11	95415677	95416677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359107, intron 1 of 9)	intron (NM_001359107, intron 1 of 9)	2094.0	NM_001359107	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25482564-2	chr14	25482064	25483064	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	23379.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73456242-2	chr2	73455742	73456742	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	PB1D7|SINE|Alu	-2353.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127840904-2	chr7	127840404	127841404	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009294)	promoter-TSS (NM_009294)	-904.0	NM_009294	20909.0	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	33.0	152.5	83.0	38.5	153.5	84.0
Merged-chr5-91961111-4	chr5	91960619	91961619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073442, intron 1 of 9)	intron (NR_073442, intron 1 of 9)	1437.0	NR_073442	68098.0	Mm.159453	NM_026557	ENSMUSG00000029397	Rchy1	ARNIP|CHIMP|Pirh2|Zfp363|Znf363	ring finger and CHY zinc finger domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55362779-4	chr13	55362287	55363287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025828)	promoter-TSS (NM_025828)	-4.0	NM_025828	66890.0	Mm.38868	NM_025828	ENSMUSG00000021484	Lman2	1110003H06Rik|1300009F09Rik|AA408240|AL023023|AU040819|GP36B|VIP36	lectin, mannose-binding 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-54029919-2	chr5	54029419	54030419	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081103, intron 1 of 11)	ERVL-B4-int|LTR|ERVL	31396.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-142023412-4	chr4	142022938	142023938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131014, intron 1 of 1)	intron (NR_131014, intron 1 of 1)	5540.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8010110-4	chr10	8009603	8010603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53980.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43343352-4	chr7	43342856	43343856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7985.0	NM_001271019	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117335267-2	chr8	117334767	117335767	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-13903.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32472517-4	chr9	32472026	32473026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 2 of 8)	Lx8|LINE|L1	68926.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100461793-4	chr7	100461294	100462294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 32 of 32)	intron (NM_001017985, intron 32 of 32)	-11197.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-98322435-4	chr4	98321939	98322939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60826.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32268099-4	chr4	32267598	32268598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-149337.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134420332-4	chr1	134419873	134420873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001306069, intron 1 of 7)	intron (NM_001306069, intron 1 of 7)	4709.0	NM_001306069	72674.0	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81060302-4	chr10	81059803	81060803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024499)	promoter-TSS (NM_024499)	-32.0	NM_024499	52551.0	Mm.30068	NM_024499	ENSMUSG00000004937	Sgta	5330427H01Rik|AI194281|D10Ertd190e|Sgt|Stg	small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-79759791-4	chr9	79759314	79760314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009945)	promoter-TSS (NM_009945)	39.0	NM_009945	12866.0	Mm.152627	NM_009945	ENSMUSG00000032330	Cox7a2	COX7AL|Cox7a3|CoxVIIa-L	cytochrome c oxidase subunit VIIa 2	protein-coding	42.0	59.5	52.5	51.5	59.0	61.5
Merged-chr17-5573222-4	chr17	5572748	5573748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	X7A_LINE|LINE|CR1	80648.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-58480944-4	chr2	58480434	58481434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355048, intron 3 of 10)	intron (NM_001355048, intron 3 of 10)	80476.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25321345-4	chr10	25320839	25321839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-22176.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50993817-4	chr17	50993308	50994308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 3 of 21)	intron (NM_028162, intron 3 of 21)	165570.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-13660610-4	chr1	13660114	13661114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145381)	promoter-TSS (NM_145381)	-105.0	NM_145381	212442.0	Mm.89572	NM_145381	ENSMUSG00000025937	Lactb2	Cgi-83|E430032H21Rik	lactamase, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113630486-4	chr6	113629969	113630969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009507, exon 3 of 3)	3' UTR (NM_009507, exon 3 of 3)	6448.0	NM_009507	22346.0	Mm.29407	NM_009507	ENSMUSG00000033933	Vhl	Vhlh	von Hippel-Lindau tumor suppressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-85588271-4	chr9	85587777	85588777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161057.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	4.0	20.0	14.0	0.0	26.0	11.5
Merged-chr15-100674060-4	chr15	100673573	100674573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_033612)	TTS (NM_033612)	-4573.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	42.0	56.0	57.0	47.5	36.5	24.5
Merged-chr10-62543680-4	chr10	62543172	62544172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16227.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-116914166-4	chr2	116913656	116914656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14004.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-123371177-4	chr7	123370672	123371672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-1257.0	NM_001316713	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132422553-4	chr4	132422040	132423040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175306)	promoter-TSS (NM_175306)	-94.0	NM_175306	100169.0	Mm.158361	NM_175306	ENSMUSG00000066043	Phactr4	3110001B12Rik|AI527228|AW495572|C330013F19Rik|N28169|mKIAA4120	phosphatase and actin regulator 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6909653-4	chr19	6909128	6910128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026306)	promoter-TSS (NM_026306)	-70.0	NM_001166370	67674.0	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25707728-4	chr7	25707237	25708237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11316.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139308087-4	chr4	139307586	139308586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145384, intron 1 of 8)	intron (NM_145384, intron 1 of 8)	2622.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	11.0	34.5	23.5	18.5	18.0	38.5
Merged-chr4-130797211-7	chr4	130796712	130797712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	4675.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31357243-2	chr6	31356743	31357743	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41530.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-61593083-4	chr2	61592588	61593588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164071)	promoter-TSS (NM_001164071)	-9.0	NR_149324	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-118141107-4	chr6	118140612	118141612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1972.0	NM_030165	78752.0	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37904979-4	chr1	37904461	37905461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033427)	TTS (NM_001033427)	11532.0	NM_001033427	332427.0	Mm.332981	NM_001033427	ENSMUSG00000061584	Lyg2	Gm776	lysozyme G-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6416677-4	chr11	6416175	6417175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008907, intron 1 of 4)	intron (NM_008907, intron 1 of 4)	805.0	NM_008907	268373.0	Mm.5246	NM_008907	ENSMUSG00000071866	Ppia	2700098C05|Cphn|CyP-18|CypA	peptidylprolyl isomerase A	protein-coding	113.0	205.0	229.5	116.0	219.0	192.0
Merged-chr3-9885138-4	chr3	9884528	9885528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51349.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	122.0	227.0	143.5	121.5	214.0	140.0
Merged-chr17-32551149-2	chr17	32550649	32551649	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_024442, exon 13 of 13)	exon (NM_024442, exon 13 of 13)	14592.0	NM_001356303	70101.0	Mm.30504	NM_024442	ENSMUSG00000048440	Cyp4f16	2310021J05Rik|AI746515	cytochrome P450, family 4, subfamily f, polypeptide 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-30401713-5	chr6	30401162	30402162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311087)	promoter-TSS (NM_001311087)	-193.0	NM_029742	76788.0	Mm.277308	NM_029742	ENSMUSG00000029775	Klhdc10	2410127E18Rik|AI593221|mKIAA0265	kelch domain containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-9944113-4	chr1	9943565	9944565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024067)	promoter-TSS (NR_024067)	53.0	NR_024067	73824.0	Mm.28311	NR_024067	ENSMUSG00000098234	Snhg6	1110008H02Rik	small nucleolar RNA host gene 6	ncRNA	43.0	133.0	70.5	41.0	121.5	45.5
Merged-chr1-131979846-4	chr1	131979344	131980344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177628, intron 4 of 4)	intron (NM_001177628, intron 4 of 4)	9235.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-149110082-2	chr2	149109582	149110582	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-234570.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	0.0	0.0	0.0	0.0	1.5	1.0
Merged-chr13-42372424-4	chr13	42371922	42372922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	70946.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-99785414-4	chr6	99784900	99785900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59008.0	NM_001037539	50501.0	Mm.87365	NM_015768	ENSMUSG00000030069	Prok2	Bv8|PK2|Prok1	prokineticin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8590172-2	chr11	8589672	8590672	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 3 of 30)	intron (NM_001083587, intron 3 of 30)	74363.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	30.0	78.0	52.0	32.5	83.0	46.5
Merged-chr4-147242250-2	chr4	147241750	147242750	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	Lx3B|LINE|L1	66384.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155206647-3	chr4	155206133	155207133	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	URR1B|DNA|hAT-Charlie	15902.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	11.5	45.0	29.0	5.5	1.0	5.5
Merged-chr13-23526581-4	chr13	23526090	23527090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4454.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-69647179-4	chr2	69646682	69647682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028284)	promoter-TSS (NM_028284)	-73.0	NM_028284	72569.0	Mm.252136	NM_028284	ENSMUSG00000063145	Bbs5	1700049I01Rik|2700023J09Rik	Bardet-Biedl syndrome 5 (human)	protein-coding	3.0	3.5	15.5	3.5	19.5	18.0
Merged-chr2-90478780-4	chr2	90478275	90479275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	399.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	60.0	95.0	107.5	54.0	147.0	94.5
Merged-chr2-26910725-4	chr2	26910233	26911233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013721)	promoter-TSS (NM_013721)	-74.0	NM_013721	27176.0	Mm.328601	NM_013721	ENSMUSG00000062647	Rpl7a	Surf3	ribosomal protein L7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79357177-4	chr15	79356687	79357687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304832, intron 2 of 2)	intron (NM_001304832, intron 2 of 2)	8785.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118243764-4	chr7	118243297	118244297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027879)	promoter-TSS (NR_027879)	-110.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	3.0	11.0	10.5	1.0	4.0	11.0
Merged-chr10-117393025-2	chr10	117392525	117393525	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16052.0	NM_001310609	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	19.0	32.0	23.0	19.0	33.0	24.0
Merged-chr10-19099843-6	chr10	19099301	19100301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41948.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	72.5	218.0	119.5	56.5	127.5	75.5
Merged-chr16-92867462-4	chr16	92866965	92867965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	-41391.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22118271-4	chr9	22117785	22118785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1090.0	NM_001357312	66126.0	Mm.29801	NM_170777	ENSMUSG00000013822	Elof1	1110011K10Rik	ELF1 homolog, elongation factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32353039-4	chr4	32352533	32353533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64402.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-29993793-4	chr5	29993292	29994292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19322.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96461024-4	chr15	96460543	96461543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028148)	promoter-TSS (NM_028148)	-200.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27231834-4	chr7	27231334	27232334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-1179.0	NM_133770	76889.0	Mm.124728	NM_133770	ENSMUSG00000003762	Coq8b	0610012P18Rik|Adck4	coenzyme Q8B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23709959-4	chr13	23709465	23710465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010424, intron 1 of 5)	MLTR14|LTR|ERV1	889.0	NM_001347493	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	123.0	270.5	224.0	104.0	289.0	190.0
Merged-chr4-133754118-1	chr4	133753618	133754618	+	1000.0	f0_balb.idr	promoter-TSS (NM_001080819)	promoter-TSS (NM_001080819)	-507.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-16007997-4	chr3	16007497	16008497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1665.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20141085-4	chr16	20140571	20141571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145931)	promoter-TSS (NM_001145931)	8.0	NM_001145930	208146.0	Mm.390895	NM_001033237	ENSMUSG00000041215	Yeats2	BC042768|mKIAA1197	YEATS domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-62664240-4	chr2	62663751	62664751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145523)	promoter-TSS (NM_145523)	-76.0	NM_145523	227960.0	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-38517938-2	chr5	38517438	38518438	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15786.0	NM_145559	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	0.5	9.5	2.0	0.5	4.0	1.0
Merged-chr14-52280039-4	chr14	52279541	52280541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172601)	promoter-TSS (NM_172601)	-646.0	NM_172601	76338.0	Mm.32870	NM_172601	ENSMUSG00000022159	Rab2b	1500012D09Rik|4930528G15Rik|A230002G14|D530043M21Rik	RAB2B, member RAS oncogene family	protein-coding	247.5	469.0	340.5	191.5	513.0	318.0
Merged-chr15-61987209-4	chr15	61986714	61987714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177353, intron 1 of 2)	CpG	1873.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32172051-2	chr5	32171551	32172551	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35579.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70653915-5	chr11	70653419	70654419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011072, intron 1 of 2)	CpG	731.0	NM_011072	18643.0	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60222969-4	chr11	60222468	60223468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358315)	promoter-TSS (NM_001358315)	-387.0	NM_001358315	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-40880454-4	chr17	40879943	40880943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027834, exon 1 of 2)	exon (NM_027834, exon 1 of 2)	115.0	NM_027834	71583.0	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding	68.5	177.0	107.5	16.0	22.5	17.0
Merged-chr1-152536679-4	chr1	152536157	152537157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 11 of 17)	intron (NM_016846, intron 11 of 17)	88560.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-82773526-4	chr6	82773040	82774040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 1 of 17)	CpG	914.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65550387-3	chr9	65549891	65550891	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29696.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	18.5	43.0	21.5	22.0	75.5	39.0
Merged-chr18-36708978-4	chr18	36708471	36709471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER4B-int|LTR|ERV1	-13046.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	1.0	0.0	2.0	4.5	2.0	3.0
Merged-chr5-113999594-4	chr5	113999102	114000102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-4133.0	NM_010018	13142.0	Mm.20115	NM_010018	ENSMUSG00000042096	Dao	AI987963|DAAO|DAMOX|Dao-1|Dao1	D-amino acid oxidase	protein-coding	0.0	21.0	18.5	14.5	11.5	7.5
Merged-chr16-4077808-4	chr16	4077316	4078316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026508)	promoter-TSS (NM_026508)	-6.0	NM_026508	68015.0	Mm.123366	NM_026508	ENSMUSG00000005981	Trap1	2410002K23Rik|HSP75	TNF receptor-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25447366-4	chr10	25446866	25447866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 3 of 16)	intron (NM_001358754, intron 3 of 16)	38998.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-19657681-4	chr2	19657187	19658187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027715)	promoter-TSS (NM_027715)	210.0	NR_033642	100041244.0	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-68183975-4	chr8	68183473	68184473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92555.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	0.0	3.0	1.0	0.0	0.5	0.5
Merged-chr19-4147953-2	chr19	4147453	4148453	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011778)	promoter-TSS (NM_011778)	-710.0	NM_011778	23789.0	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65319810-4	chr3	65319323	65320323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357358, intron 8 of 13)	intron (NM_001357358, intron 8 of 13)	-17138.0	NR_126080	102637797.0	Mm.446731	NR_126080	ENSMUSG00000104093	A330015K06Rik	-	RIKEN cDNA A330015K06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95229493-2	chr3	95228993	95229993	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019914)	promoter-TSS (NM_019914)	550.0	NM_001038708	57912.0	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167421541-4	chr2	167421041	167422041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148929)	promoter-TSS (NM_148929)	-169.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23108132-7	chr16	23107642	23108642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030705)	promoter-TSS (NR_030705)	674.0	NM_001347179	13682.0	Mm.260084	NM_013506	ENSMUSG00000022884	Eif4a2	4833432N07Rik|BM-010|Ddx2b|Eif4|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40239823-4	chr4	40239335	40240335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172689)	promoter-TSS (NM_172689)	-10.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59889905-4	chr2	59889415	59890415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR9A3|LTR|ERVK	-7309.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80943103-4	chr10	80942588	80943588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12997.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79681920-4	chr10	79681429	79682429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177613)	promoter-TSS (NM_177613)	-266.0	NM_001359818	216150.0	Mm.21981	NM_177613	ENSMUSG00000020307	Cdc34	AI327276|E2-CDC34|UBE2R1	cell division cycle 34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131089832-4	chr2	131089331	131090331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3066.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	66.5	147.0	117.5	58.5	212.0	133.5
Merged-chr8-84903217-4	chr8	84902723	84903723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010635, exon 2 of 3)	exon (NM_010635, exon 2 of 3)	1295.0	NM_010635	16596.0	Mm.4847	NM_010635	ENSMUSG00000054191	Klf1	Eklf|Nan	Kruppel-like factor 1 (erythroid)	protein-coding	12.5	46.0	23.0	6.0	16.0	17.0
Merged-chr11-121706171-2	chr11	121705671	121706671	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144797, intron 1 of 3)	intron (NM_144797, intron 1 of 3)	3744.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75047951-4	chr11	75047436	75048436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 12 of 18)	intron (NM_001002764, intron 12 of 18)	18055.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90234410-2	chr9	90233910	90234910	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	36359.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-67526178-4	chr13	67525672	67526672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133228)	promoter-TSS (NM_133228)	59.0	NM_133228	170763.0	Mm.491205	NM_133228	ENSMUSG00000097333	Zfp87	2210039O17Rik|4631412O18Rik|KRAB4|Mzf22|Zfp72	zinc finger protein 87	protein-coding	58.5	200.5	163.5	87.5	158.0	132.5
Merged-chr14-75147907-4	chr14	75147413	75148413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	L1_Mus3|LINE|L1	11488.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79197222-4	chr3	79196709	79197709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15710.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	31.5	114.5	64.0	40.5	60.5	56.5
Merged-chr18-6136099-4	chr18	6135596	6136596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029277)	promoter-TSS (NM_029277)	2.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	30.0	56.0	25.0	17.0	49.0	38.0
Merged-chr7-19024261-4	chr7	19023766	19024766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026605)	promoter-TSS (NM_026605)	-111.0	NM_001360713	68188.0	Mm.130902	NM_026605	ENSMUSG00000023118	Sympk	1500016F02Rik|4632415H16Rik|AA125406|AI449890|SPK|SYM	symplekin	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr14-30547000-1	chr14	30546500	30547500	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-2131.0	NM_009388	21881.0	Mm.290692	NM_009388	ENSMUSG00000021957	Tkt	p68	transketolase	protein-coding	0.0	4.0	0.0	0.0	0.0	2.0
Merged-chr3-51709379-4	chr3	51708901	51709901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	RMER15|LTR|ERVL	48222.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35189379-4	chr17	35188910	35189910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010734)	promoter-TSS (NM_010734)	-970.0	NM_010734	16988.0	Mm.19379	NM_010734	ENSMUSG00000073412	Lst1	B144	leukocyte specific transcript 1	protein-coding	10.5	41.0	35.0	6.0	59.0	34.5
Merged-chr15-66845503-4	chr15	66844967	66845967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 45 of 47)	intron (NM_009375, intron 45 of 47)	-13638.0	NM_009192	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116175774-4	chr9	116175269	116176269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009371)	promoter-TSS (NM_009371)	-406.0	NM_029575	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	69.5	169.0	105.5	71.5	199.0	131.5
Merged-chr14-26441620-4	chr14	26441135	26442135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 14 of 22)	intron (NM_001310445, intron 14 of 22)	84088.0	NR_038005	71106.0	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-44105230-4	chr17	44104724	44105724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357996, intron 1 of 3)	intron (NM_001357996, intron 1 of 3)	584.0	NM_199016	224794.0	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	55.5	86.0	54.0	51.5	92.5	41.0
Merged-chr2-26916421-4	chr2	26915913	26916913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013678)	promoter-TSS (NM_013678)	-8.0	NM_013678	20931.0	Mm.389260	NM_013678	ENSMUSG00000014873	Surf2	Surf-2	surfeit gene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-21534659-4	chr17	21534192	21535192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144515)	promoter-TSS (NM_144515)	-847.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	11.0	41.0	6.0	4.0	17.5	18.5
Merged-chr1-171069732-2	chr1	171069232	171070232	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5080.0	NR_106103	102466998.0		NR_106103	ENSMUSG00000099119	Mir6546	Gm27408|mmu-mir-6546	microRNA 6546	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90269108-4	chr9	90268628	90269628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	1641.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	38.0	41.5	33.5	22.0	50.0	20.0
Merged-chr11-102946773-4	chr11	102946294	102947294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011795)	promoter-TSS (NM_011795)	-333.0	NM_011795	23829.0	Mm.57154	NM_011795	ENSMUSG00000045532	C1ql1	C1qrf|CRF|CTRP14|gliacolin	complement component 1, q subcomponent-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130947536-2	chr4	130947036	130948036	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010769, intron 2 of 7)	intron (NM_010769, intron 2 of 7)	3151.0	NM_010769	17180.0	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86894619-4	chr12	86894118	86895118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9804.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8994498-4	chr15	8993991	8994991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198024, intron 1 of 13)	(A)n|Simple_repeat|Simple_repeat	26542.0	NM_198024	223332.0	Mm.321371	NM_198024	ENSMUSG00000048424	Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-118070297-4	chr3	118069786	118070786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-201350.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79171741-3	chr3	79171256	79172256	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-25881.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	13.5	26.5	18.5	10.5	16.0	6.0
Merged-chr14-51278653-4	chr14	51278154	51279154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22542.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	4.0	22.0	23.5	14.0	37.5	25.5
Merged-chr17-34124808-4	chr17	34124298	34125298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360530)	promoter-TSS (NM_001360530)	-720.0	NM_001360530	14998.0	Mm.16373	NM_010386	ENSMUSG00000037649	H2-DMa	H-2Ma|H2-Ma	histocompatibility 2, class II, locus DMa	protein-coding	72.5	202.0	113.0	52.0	155.0	74.0
Merged-chr16-23612202-4	chr16	23611720	23612720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023386, intron 1 of 1)	intron (NM_023386, intron 1 of 1)	2301.0	NM_023386	67775.0	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127851077-4	chr7	127850583	127851583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	9275.0	NM_009294	20909.0	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114654169-4	chr5	114653658	114654658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022017, intron 1 of 15)	MIR3|SINE|MIR	4263.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	18.0	53.5	26.5	28.5	71.5	43.0
Merged-chr10-86885910-4	chr10	86885414	86886414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 42 of 68)	intron (NM_138673, intron 42 of 68)	106909.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128059816-4	chr10	128059306	128060306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019766, intron 1 of 7)	CpG	824.0	NM_019766	56351.0	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3	protein-coding	48.5	143.0	113.5	119.0	144.0	141.5
Merged-chr8-41047077-4	chr8	41046565	41047565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 5 of 13)	intron (NM_001005863, intron 5 of 13)	-5134.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	10.0	74.0	25.0	14.5	36.0	27.5
Merged-chr1-187216873-4	chr1	187216378	187217378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357645, intron 1 of 9)	intron (NM_001357645, intron 1 of 9)	1135.0	NM_001357645	67769.0	Mm.138321	NM_026367	ENSMUSG00000039210	Gpatch2	5830433G22Rik|5830436K05Rik|AI427714|AI447508|AW107440|AW491060|Gpatc2	G patch domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113875925-4	chr13	113875427	113876427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	81419.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7241203-4	chr19	7240693	7241693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027643)	promoter-TSS (NM_027643)	29.0	NM_027643	70999.0	Mm.329605	NM_027643	ENSMUSG00000024764	Naa40	4931433E08Rik|AU023197|Nat11|NatD	N(alpha)-acetyltransferase 40, NatD catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53253156-2	chr18	53252656	53253656	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	7494.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72135211-4	chr8	72134757	72135757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001491)	promoter-TSS (NM_001001491)	-35.0	NM_001001491	326618.0	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	26.0	50.5	25.5	32.0	78.5	55.0
Merged-chr10-82858651-4	chr10	82858168	82859168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015762)	promoter-TSS (NM_015762)	-538.0	NM_001042513	50493.0	Mm.210155	NM_015762	ENSMUSG00000020250	Txnrd1	TR|TR1|TrxR1	thioredoxin reductase 1	protein-coding	31.5	25.5	29.0	22.0	52.5	41.0
Merged-chr13-37451679-4	chr13	37451188	37452188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106343.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	2.5	1.5	3.5	4.0	3.5	6.5
Merged-chr4-118620835-4	chr4	118620299	118621299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026789)	promoter-TSS (NM_026789)	0.0	NM_026932	69072.0	Mm.29906	NM_026932	ENSMUSG00000028729	Ebna1bp2	1810014B19Rik|AA537058|B830003A16Rik|C81321|Ebp2|Nobp|p40	EBNA1 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23752277-4	chr13	23751774	23752774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178203)	promoter-TSS (NM_178203)	-106.0	NM_178203	319150.0		NM_178203	ENSMUSG00000069267	Hist1h3b	H3-53	histone cluster 1, H3b	protein-coding	23.5	63.5	41.0	21.5	64.0	40.5
Merged-chr1-127219357-4	chr1	127218844	127219844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	MIRc|SINE|MIR	14358.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	10.0	32.0	18.5	7.0	4.0	6.0
Merged-chr3-96580330-4	chr3	96579840	96580840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027241, intron 5 of 7)	intron (NM_027241, intron 5 of 7)	-13539.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	28.0	47.5	77.0	16.5	111.0	39.0
Merged-chr19-38224167-4	chr19	38223695	38224695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081075)	promoter-TSS (NM_001081075)	-63.0	NM_001081075	70567.0	Mm.30607	NM_001081075	ENSMUSG00000054237	Fra10ac1	5730455O13Rik|AI448293	FRA10AC1 homolog (human)	protein-coding	7.5	28.0	14.0	7.5	29.0	34.0
Merged-chr17-50192576-4	chr17	50192059	50193059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2062.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-176832770-4	chr1	176832246	176833246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 5 of 18)	intron (NM_001357390, intron 5 of 18)	3387.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	62.5	107.0	81.5	23.0	77.0	43.5
Merged-chr6-91684706-2	chr6	91684206	91685206	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 1 of 14)	intron (NM_009320, intron 1 of 14)	639.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21551481-2	chr9	21550981	21551981	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153141, intron 1 of 14)	intron (NM_153141, intron 1 of 14)	4587.0	NM_153141	59035.0	Mm.178115	NM_021531	ENSMUSG00000032185	Carm1	Prmt4	coactivator-associated arginine methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97449938-4	chr6	97449418	97450418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	9368.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64046065-4	chr15	64045557	64046557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	13707.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79409484-4	chr15	79408983	79409983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6180.0	NM_172608	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	70.5	181.5	81.5	38.5	222.5	102.5
Merged-chr1-170255707-4	chr1	170255202	170256202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151590)	promoter-TSS (NR_151590)	37.0	NR_151590	622708.0	Mm.389210	NR_151590	ENSMUSG00000096964	Gm6345	EG622708	predicted gene 6345	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-58399270-4	chr7	58398760	58399760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-258942.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	8.5	41.0	15.5	11.0	28.5	20.0
Merged-chr1-171065968-2	chr1	171065468	171066468	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1316.0	NR_106103	102466998.0		NR_106103	ENSMUSG00000099119	Mir6546	Gm27408|mmu-mir-6546	microRNA 6546	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-104465618-3	chr7	104465104	104466104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	promoter-TSS (NM_009099)	promoter-TSS (NM_009099)	-411.0	NM_009099	20128.0	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	22.0	48.5	30.0	19.5	36.5	34.0
Merged-chr11-20113411-2	chr11	20112906	20113906	+	1000.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_146243)	promoter-TSS (NM_146243)	-455.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	335.0	747.5	512.0	189.0	608.5	411.0
Merged-chr6-16965851-4	chr6	16965354	16966354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67413.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73911342-4	chr2	73910841	73911841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175015)	promoter-TSS (NM_175015)	-15.0	NM_001301722	228033.0	Mm.2966	NM_175015	ENSMUSG00000018770	Atp5g3	6030447M23	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-26441240-4	chr14	26440736	26441736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 14 of 22)	PB1D10|SINE|Alu	83689.0	NR_038005	71106.0	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43544621-7	chr7	43544129	43545129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-11458.0	NM_021293	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-58423365-4	chr4	58422863	58423863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17735.0	NR_037278	100526502.0		NR_037278	ENSMUSG00000093293	Mir3095	mir-3095|mmu-mir-3095	microRNA 3095	ncRNA	9.0	20.0	15.0	1.0	14.5	9.5
Merged-chr9-70503312-4	chr9	70502799	70503799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357494)	promoter-TSS (NM_001357494)	79.0	NM_001357494	93836.0	Mm.29783	NM_033604	ENSMUSG00000032217	Rnf111	ARK|Arkadia	ring finger 111	protein-coding	19.5	31.0	31.0	16.0	29.0	31.0
Merged-chr4-125118152-4	chr4	125117655	125118655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153159)	TTS (NM_153159)	9726.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31291175-4	chr5	31290685	31291685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026298)	promoter-TSS (NM_026298)	-71.0	NM_026298	67661.0	Mm.293023	NM_026298	ENSMUSG00000038564	Ift172	4930553F24Rik|Slb|avc1|wim	intraflagellar transport 172	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-9127751-1	chr15	9127251	9128251	+	1000.0	f0_balb.idr	intron (NM_013787, intron 3 of 9)	intron (NM_013787, intron 3 of 9)	12703.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-60736774-4	chr14	60736277	60737277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310594, intron 1 of 9)	intron (NM_001310594, intron 1 of 9)	3873.0	NM_001310594	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-79430470-4	chr14	79429969	79430969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001024135, exon 1 of 1)	3' UTR (NM_001024135, exon 1 of 1)	3958.0	NM_001024135	211255.0	Mm.284526	NM_001024135	ENSMUSG00000043881	Kbtbd7	1110008P08Rik|AU045792|Gm295	kelch repeat and BTB (POZ) domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22225286-3	chr9	22224784	22225784	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172763)	promoter-TSS (NM_172763)	-419.0	NM_172763	235047.0	Mm.290849	NM_172763	ENSMUSG00000057982	Zfp809	BB114266|C330026E23	zinc finger protein 809	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102697738-2	chr12	102697238	102698238	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	7131.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105892045-4	chr3	105891540	105892540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-12381.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	38.5	71.0	54.0	42.0	94.5	69.5
Merged-chr11-48872426-4	chr11	48871928	48872928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1008.0	NM_008326	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55399690-2	chr12	55399190	55400190	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011968, intron 1 of 6)	intron (NM_011968, intron 1 of 6)	865.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75011189-4	chr14	75010684	75011684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 3 of 3)	intron (NR_030568, intron 3 of 3)	-4843.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-49411851-4	chr2	49411350	49412350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39636.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55013063-4	chr11	55012540	55013540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 3 of 24)	intron (NR_138556, intron 3 of 24)	20431.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-92483532-4	chr13	92483029	92484029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163627, intron 1 of 5)	B2_Mm2|SINE|B2	502.0	NM_001163627	73942.0	Mm.85935	NM_001163627	ENSMUSG00000034334	Fam151b	4930405M20Rik	family with sequence similarity 151, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-94537484-4	chr9	94537025	94538025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033145, exon 1 of 3)	exon (NM_001033145, exon 1 of 3)	556.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58742614-4	chr1	58742110	58743110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 7 of 8)	intron (NM_001355056, intron 7 of 8)	12058.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-44118872-4	chr1	44118326	44119326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023645)	promoter-TSS (NM_023645)	-53.0	NM_023645	72050.0	Mm.281714	NM_023645	ENSMUSG00000026047	Kdelc1	1810049A15Rik|5730416C13Rik|EP58|Kdel1	KDEL (Lys-Asp-Glu-Leu) containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12795631-4	chr19	12795142	12796142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361971)	promoter-TSS (NM_001361971)	481.0	NR_024093	664779.0	Mm.290924	NM_001039718	ENSMUSG00000024695	Gm44505	Zfp91-Cntf|Zfp91Cntf	predicted readthrough transcript (NMD candidate), 44505	ncRNA	8.5	34.0	33.0	10.5	44.0	36.0
Merged-chr7-49272586-4	chr7	49272055	49273055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 1 of 37)	B1F|SINE|Alu	26366.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117288124-4	chr8	117287620	117288620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	31101.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70773086-2	chr8	70772586	70773586	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008841, intron 2 of 15)	intron (NM_008841, intron 2 of 15)	3626.0	NM_008841	18709.0	Mm.12945	NM_008841	ENSMUSG00000031834	Pik3r2	p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding	0.0	1.0	0.0	0.0	3.0	0.0
Merged-chr4-43259832-3	chr4	43259289	43260289	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081413, intron 37 of 39)	intron (NM_001081413, intron 37 of 39)	-7370.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	23.5	22.0	33.5	56.0	71.5	111.0
Merged-chr6-122939793-4	chr6	122939299	122940299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12716.0	NM_001204241	73149.0	Mm.25684	NM_153197	ENSMUSG00000043832	Clec4a3	3110037K17Rik|Dcir3	C-type lectin domain family 4, member a3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83867190-4	chr6	83866686	83867686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-35445.0	NM_146169	232164.0	Mm.404420	NM_146169	ENSMUSG00000045896	Paip2b	-	poly(A) binding protein interacting protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60353107-4	chr11	60352605	60353605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029044)	promoter-TSS (NM_029044)	-200.0	NM_001359810	216810.0	Mm.218875	NM_153080	ENSMUSG00000000538	Tom1l2	2900016I08Rik|A730055F12Rik|AU042072|Srebf1	target of myb1-like 2 (chicken)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120713811-4	chr11	120713296	120714296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016665)	promoter-TSS (NM_016665)	12.0	NM_001347611	20892.0	Mm.259716	NM_016665	ENSMUSG00000025144	Cenpx	Stra13	centromere protein X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19068505-4	chr10	19067995	19068995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53085.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	19.0	33.5	31.5	21.5	37.5	47.5
Merged-chr18-57878678-5	chr18	57878187	57879187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009194)	promoter-TSS (NM_009194)	9.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	21.0	38.5	51.5	13.0	48.0	45.0
Merged-chr6-129533428-6	chr6	129532923	129533923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045270)	promoter-TSS (NR_045270)	-139.0	NR_045270	100504641.0	Mm.398286	NR_045270	ENSMUSG00000097675	1700101I11Rik	-	RIKEN cDNA 1700101I11 gene	ncRNA	17.5	95.0	64.0	29.0	77.0	47.0
Merged-chr6-121341917-4	chr6	121341420	121342420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1156.0	NM_001347433	14411.0	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4115889-2	chr19	4115389	4116389	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016666, intron 4 of 6)	intron (NM_016666, intron 4 of 6)	5686.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32292967-4	chr12	32292465	32293465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR67B|LTR|ERVL	-84316.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	9.0	18.0	8.5	9.0	18.0	8.0
Merged-chr7-19270235-2	chr7	19269735	19270735	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009499, intron 1 of 12)	intron (NM_009499, intron 1 of 12)	1619.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	17.5	69.0	31.0	20.0	64.5	25.0
Merged-chr10-78062465-2	chr10	78061965	78062965	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081695, intron 13 of 13)	Lx5|LINE|L1	-6903.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168154645-4	chr2	168154124	168155124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040327)	promoter-TSS (NR_040327)	-111.0	NR_040327	77017.0	Mm.407822	NR_040327	ENSMUSG00000087648	E130018N17Rik	-	RIKEN cDNA E130018N17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-44218735-2	chr5	44218235	44219235	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173764, intron 1 of 13)	intron (NM_173764, intron 1 of 13)	7871.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16084490-4	chr19	16083992	16084992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48339.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	87.0	300.5	148.5	46.0	142.0	113.5
Merged-chr11-6627980-4	chr11	6627453	6628453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-1886.0	NM_134011	21379.0	Mm.247761	NM_134011	ENSMUSG00000000384	Tbrg4	2310042P22Rik|AA120735|AA408001|AI527316|Cpr2|R74877|Tb-12|mKIAA0948	transforming growth factor beta regulated gene 4	protein-coding	1.0	11.0	7.5	0.0	5.5	13.0
Merged-chr10-71285277-4	chr10	71284783	71285783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145420)	promoter-TSS (NM_145420)	-21.0	NM_145420	216080.0	Mm.270530	NM_145420	ENSMUSG00000019927	Ube2d1	UBCH5	ubiquitin-conjugating enzyme E2D 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163419632-4	chr2	163419125	163420125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025699)	promoter-TSS (NM_025699)	-146.0	NR_151490	108168734.0	Mm.440000	NR_151490		2900093K20Rik	-	RIKEN cDNA 2900093K20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85256294-1	chr1	85255794	85256794	+	1000.0	f1_balb.idr	intron (NM_001037909, intron 3 of 6)	intron (NM_001037909, intron 3 of 6)	14272.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111033789-4	chr8	111033311	111034311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146217)	promoter-TSS (NM_146217)	-31.0	NM_146217	234734.0	Mm.24174	NM_146217	ENSMUSG00000031960	Aars	AI316495|C76919|sti	alanyl-tRNA synthetase	protein-coding	57.0	133.5	120.0	55.0	151.0	104.0
Merged-chr6-83831864-4	chr6	83831360	83832360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146169)	promoter-TSS (NM_146169)	-119.0	NM_146169	232164.0	Mm.404420	NM_146169	ENSMUSG00000045896	Paip2b	-	poly(A) binding protein interacting protein 2B	protein-coding	6.5	9.5	13.5	20.0	31.5	21.0
Merged-chr10-83637525-4	chr10	83637018	83638018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145220, intron 2 of 20)	intron (NM_145220, intron 2 of 20)	11146.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-3973118-4	chr10	3972616	3973616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172308)	promoter-TSS (NM_172308)	41.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45783661-4	chr19	45783171	45784171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151594)	promoter-TSS (NR_151594)	-118.0	NM_023799	76055.0	Mm.122725	NM_023799	ENSMUSG00000025220	Mgea5	Hy5|Ncoat|OGA	meningioma expressed antigen 5 (hyaluronidase)	protein-coding	17.0	67.0	31.0	31.0	56.5	26.5
Merged-chr15-6411553-4	chr15	6411053	6412053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	24805.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50255041-4	chr6	50254539	50255539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018769, intron 1 of 9)	intron (NM_018769, intron 1 of 9)	6730.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-73093099-4	chr11	73092589	73093589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361245, intron 1 of 30)	intron (NM_001361245, intron 1 of 30)	2494.0	NM_172944	16407.0	Mm.96	NM_008399	ENSMUSG00000005947	Itgae	A530055J10|CD103|aM290|alpha-E1|alpha-M290	integrin alpha E, epithelial-associated	protein-coding	13.0	35.0	16.0	12.0	53.5	29.0
Merged-chr5-115484431-4	chr5	115483916	115484916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167691)	promoter-TSS (NM_001167691)	68.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	47.5	124.5	100.0	38.5	104.0	79.5
Merged-chr13-24104208-4	chr13	24103725	24104725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026825, intron 17 of 37)	intron (NM_026825, intron 17 of 37)	-113011.0	NM_145399	214189.0	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-92287116-4	chr6	92286608	92287608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42458.0	NM_009426	22044.0	Mm.1363	NM_009426	ENSMUSG00000005892	Trh	Pro-TRH|Trf	thyrotropin releasing hormone	protein-coding	3.0	28.5	9.0	9.0	12.5	5.0
Merged-chr7-101348535-2	chr7	101348035	101349035	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	466.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46856831-4	chr17	46856340	46857340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-25427.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16295586-4	chr7	16295092	16296092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-8797.0	NM_001136471	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	20.5	12.0	27.5	7.5	7.5	7.0
Merged-chr8-84218342-4	chr8	84217853	84218853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172503, intron 11 of 13)	intron (NM_172503, intron 11 of 13)	-9446.0	NR_037294	100526528.0		NR_037294	ENSMUSG00000105458	Mir3074-2	mir-3074-2|mmu-mir-3074-2	microRNA 3074-2	ncRNA	32.0	57.0	45.5	22.0	86.0	36.5
Merged-chr8-122934145-4	chr8	122933649	122934649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 2 of 12)	MT2B|LTR|ERVL	85775.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8898029-4	chr19	8897523	8898523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008060)	promoter-TSS (NM_008060)	-34.0	NM_001293621	14376.0	Mm.3196	NM_008060	ENSMUSG00000071650	Ganab	AU042638|G2an|GluII|mKIAA0088	alpha glucosidase 2 alpha neutral subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109868505-4	chr8	109868023	109869023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122594)	promoter-TSS (NM_001122594)	-80.0	NM_001122594	244650.0	Mm.23494	NM_001122594	ENSMUSG00000031732	Phlpp2	AI481772|C130044A18Rik|Phlppl	PH domain and leucine rich repeat protein phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-81551986-4	chr17	81551461	81552461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	186426.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119208892-4	chr2	119208362	119209362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139139)	promoter-TSS (NM_139139)	-67.0	NM_139139	69408.0	Mm.222241	NM_139139	ENSMUSG00000034278	Dnajc17	1700025B16Rik|C87112|D9Bwg1371e	DnaJ heat shock protein family (Hsp40) member C17	protein-coding	75.5	237.5	188.0	105.5	219.0	195.0
Merged-chr3-95675719-4	chr3	95675277	95676277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_144899)	TTS (NM_144899)	12140.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10835076-4	chr16	10834578	10835578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162932)	promoter-TSS (NM_001162932)	19.0	NM_001162932	223970.0	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131096488-4	chr1	131096036	131097036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	1307.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	137.5	390.0	302.5	227.0	424.5	287.0
Merged-chr8-71630734-4	chr8	71630274	71631274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_106035)	TTS (NR_106035)	332.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-74522590-4	chr13	74522103	74523103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28653.0	NM_146231	235956.0		NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	1.0	8.5	4.0	5.5	2.0	3.0
Merged-chr1-89450226-4	chr1	89449733	89450733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4578.0	NM_178119	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11433983-4	chr16	11433492	11434492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 11 of 20)	intron (NM_028964, intron 11 of 20)	28344.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-65596694-4	chr6	65596197	65597197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001495, intron 3 of 7)	intron (NM_001001495, intron 3 of 7)	6299.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-62858516-4	chr14	62858018	62859018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	-7024.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	8.5	13.0	17.5	1.5	5.5	11.0
Merged-chr10-52233657-4	chr10	52233122	52234122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347444)	promoter-TSS (NM_001347444)	3.0	NM_025705	66686.0	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110920986-4	chr7	110920487	110921487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194464, intron 10 of 20)	intron (NM_194464, intron 10 of 20)	16002.0	NR_045267	100504184.0	Mm.441327	NR_045267	ENSMUSG00000087160	Gm16336	-	predicted gene 16336	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-22731420-4	chr10	22730890	22731890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011603)	promoter-TSS (NM_011603)	57.0	NM_011603	237336.0	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130488787-4	chr2	130488275	130489275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355161, intron 1 of 21)	intron (NM_001355161, intron 1 of 21)	38497.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	94.0	250.5	213.0	144.0	294.5	243.5
Merged-chr7-46920725-2	chr7	46920225	46921225	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348089)	promoter-TSS (NM_001348089)	-756.0	NM_021884	22088.0	Mm.241334	NM_021884	ENSMUSG00000014402	Tsg101	AI255943|CC2	tumor susceptibility gene 101	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67329617-4	chr17	67329109	67330109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	24850.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35363903-4	chr16	35363398	35364398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133704)	promoter-TSS (NM_133704)	20.0	NM_133704	317717.0	Mm.259164	NM_133704	ENSMUSG00000034473	Sec22a	1810005C06Rik|Sec22l2	SEC22 homolog A, vesicle trafficking protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-144908946-4	chr4	144908405	144909405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	15768.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114927737-4	chr11	114927254	114928254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347651, intron 2 of 3)	intron (NM_001347651, intron 2 of 3)	6632.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52455780-4	chr2	52455284	52456284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 9 of 13)	intron (NM_001037099, intron 9 of 13)	-30910.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88702229-4	chr1	88701707	88702707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177305)	promoter-TSS (NM_177305)	-16.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34487981-2	chr5	34487481	34488481	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25998.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	8.0	22.0	17.0	7.5	21.5	15.5
Merged-chr1-60865359-4	chr1	60864869	60865869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	-43656.0	NM_009843	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-54735031-4	chr3	54734537	54735537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025442)	promoter-TSS (NM_025442)	327.0	NM_027148	69639.0	Mm.29253	NM_027148	ENSMUSG00000027752	Exosc8	2310032N20Rik|CIP3|mKIAA4013	exosome component 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-5242451-4	chr15	5241945	5242945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008965, exon 2 of 3)	exon (NM_008965, exon 2 of 3)	1742.0	NM_001136079	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108341995-4	chr9	108341480	108342480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2900.0	NM_001329527	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-58596535-4	chr6	58596035	58597035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011920)	promoter-TSS (NM_011920)	-137.0	NM_011920	26357.0	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34174272-4	chr17	34173784	34174784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13046.0	NM_013585	16912.0	Mm.390983	NM_013585	ENSMUSG00000096727	Psmb9	Lmp-2|Lmp2	proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	protein-coding	6.5	21.5	4.0	9.0	9.5	11.0
Merged-chr2-26503820-4	chr2	26503337	26504337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008714)	promoter-TSS (NM_008714)	-15.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80257024-2	chr18	80256524	80257524	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164420, exon 2 of 5)	exon (NM_001164420, exon 2 of 5)	718.0	NM_025861	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	4.0	11.0	6.5	29.0	2.5	22.0
Merged-chr2-59465910-4	chr2	59465416	59466416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18737.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152526436-4	chr1	152525936	152526936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 15 of 17)	intron (NM_016846, intron 15 of 17)	98781.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-103215322-4	chr4	103214805	103215805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356276)	promoter-TSS (NM_001356276)	-129.0	NM_177732	242585.0	Mm.281800	NM_177732	ENSMUSG00000028521	Slc35d1	AI834976|C330011J09|UGTREL7|mKIAA0260	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35812675-2	chr17	35812175	35813175	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9038.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr1-74295693-4	chr1	74295197	74296197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027154, intron 1 of 11)	intron (NM_027154, intron 1 of 11)	8639.0	NM_027154	69660.0	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108766298-1	chr12	108765798	108766798	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-27013.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40569265-4	chr12	40568765	40569765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	123212.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-10609674-1	chr18	10609174	10610174	+	1000.0	f0_balb.idr	intron (NM_001081222, intron 1 of 10)	CpG	678.0	NM_001081222	77805.0	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	26.0	120.0	82.0	50.5	157.5	78.0
Merged-chr7-25794957-4	chr7	25794452	25795452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6219.0	NM_001190975	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-46882786-4	chr14	46882299	46883299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028966)	promoter-TSS (NM_028966)	-166.0	NM_028966	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	15.5	25.5	8.0	5.0	21.5	12.0
Merged-chr1-86381199-4	chr1	86380696	86381696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6945.0	NM_010341	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129594381-1	chr2	129593881	129594881	+	1000.0	f0_balb.idr	intron (NM_001291022, intron 1 of 4)	intron (NM_001291022, intron 1 of 4)	-1081.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	406.5	988.0	639.5	400.0	1053.5	602.5
Merged-chr5-72817858-4	chr5	72817337	72818337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	50611.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-117728498-4	chr12	117728004	117729004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 20 of 27)	intron (NM_175930, intron 20 of 27)	-115357.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	9.5	1.0	12.0	4.0	4.5	4.5
Merged-chr9-63775425-2	chr9	63774925	63775925	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17431.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86430221-4	chr1	86429724	86430724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3895.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145197758-2	chr4	145197259	145198259	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-2754.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr9-25151887-4	chr9	25151374	25152374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020586)	promoter-TSS (NM_020586)	-93.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106908915-3	chr9	106908429	106909429	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153413, intron 46 of 52)	intron (NM_153413, intron 46 of 52)	-16991.0	NM_029103	74840.0	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	17.5	55.0	41.0	4.0	15.5	3.0
Merged-chr10-9707203-4	chr10	9706658	9707658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22436.0	NR_038036	620417.0	Mm.378085	NR_038036	ENSMUSG00000111901	Gm6150	-	predicted gene 6150	ncRNA	27.0	50.0	14.0	34.5	63.0	14.5
Merged-chr12-3780841-4	chr12	3780332	3781332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007886, intron 18 of 18)	intron (NM_007886, intron 18 of 18)	-26148.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191280899-4	chr1	191280410	191281410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37208.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	36.5	112.0	62.5	80.5	162.0	100.0
Merged-chr11-118289275-2	chr11	118288775	118289775	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033528, intron 1 of 20)	intron (NM_001033528, intron 1 of 20)	969.0	NM_001033528	72344.0	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20076960-4	chr10	20076450	20077450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 12 of 29)	intron (NM_008580, intron 12 of 29)	-71970.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29241727-4	chr19	29241220	29242220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10083.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51996412-4	chr13	51995914	51996914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-100327.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8772637-4	chr10	8772143	8773143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	113427.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	12.0	21.0	13.5	5.5	17.5	7.5
Merged-chr3-103859662-4	chr3	103859154	103860154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008979)	promoter-TSS (NM_008979)	-141.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	81.0	233.0	144.0	93.5	191.0	142.5
Merged-chr2-164832937-4	chr2	164832474	164833474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008906)	promoter-TSS (NM_008906)	102.0	NM_001038492	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54517539-4	chr14	54517047	54518047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013768)	promoter-TSS (NM_013768)	-77.0	NM_001313907	27374.0	Mm.196585	NM_013768	ENSMUSG00000023110	Prmt5	Jbp1|Skb1	protein arginine N-methyltransferase 5	protein-coding	0.0	4.5	3.0	0.0	2.0	2.0
Merged-chr7-19266141-4	chr7	19265646	19266646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009499, intron 1 of 12)	intron (NM_009499, intron 1 of 12)	5708.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	63.5	99.0	55.5	30.5	121.0	72.5
Merged-chr12-86832373-4	chr12	86831880	86832880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52434.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88409473-4	chr4	88408963	88409963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081184, intron 43 of 43)	intron (NM_001081184, intron 43 of 43)	29463.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	12.0	28.5	20.5	11.5	22.5	21.0
Merged-chr16-36670015-1	chr16	36669515	36670515	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-3938.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95827611-4	chr16	95827121	95828121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	71092.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-83860908-4	chr12	83860391	83861391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073564, intron 2 of 12)	MTEa|LTR|ERVL-MaLR	15921.0	NM_001272056	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67351537-4	chr17	67351052	67352052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	2907.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25284632-4	chr10	25284137	25285137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 2 of 7)	intron (NM_018747, intron 2 of 7)	14526.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62879367-4	chr11	62878845	62879845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356521)	promoter-TSS (NM_001356521)	-110.0	NM_001356520	67510.0	Mm.9806	NM_026210	ENSMUSG00000014177	Tvp23b	1810036I24Rik|Fam18b|Fam18b1	trans-golgi network vesicle protein 23B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52061639-4	chr13	52061132	52062132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35109.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27689597-4	chr3	27689096	27690096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 1 of 26)	G-rich|Low_complexity|Low_complexity	20856.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-77460487-4	chr5	77459973	77460973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5015.0	NR_131050	69370.0	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103353079-2	chr15	103352579	103353579	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001314041, intron 14 of 30)	intron (NM_001314041, intron 14 of 30)	-2554.0	NR_105928	102466775.0		NR_105928	ENSMUSG00000098419	Mir6963	Gm27724|mmu-mir-6963	microRNA 6963	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120375939-2	chr11	120375439	120376439	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027980, intron 3 of 9)	intron (NM_027980, intron 3 of 9)	2807.0	NM_027980	71885.0	Mm.274890	NM_027980	ENSMUSG00000025384	Faap100	2310003H01Rik	Fanconi anemia core complex associated protein 100	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94993470-4	chr11	94992965	94993965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172261, intron 1 of 9)	intron (NM_172261, intron 1 of 9)	2253.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120736298-4	chr8	120735802	120736802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008320)	promoter-TSS (NM_008320)	-56.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-100032776-4	chr10	100032272	100033272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347156, intron 1 of 8)	intron (NM_001347156, intron 1 of 8)	16951.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-52145016-4	chr16	52144500	52145500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 9 of 17)	intron (NM_001033238, intron 9 of 17)	113451.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99260120-4	chr15	99259641	99260641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045627, intron 1 of 2)	intron (NR_045627, intron 1 of 2)	-8180.0	NM_016766	51812.0	Mm.383472	NM_016766	ENSMUSG00000037570	Mcrs1	C78274|ICP22BP|MSP58|P78	microspherule protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49216122-4	chr13	49215637	49216637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026738)	promoter-TSS (NM_026738)	-111.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46732759-4	chr8	46732231	46733231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045750, intron 2 of 2)	intron (NR_045750, intron 2 of 2)	6784.0	NR_045750	100503498.0	Mm.187358	NR_045750	ENSMUSG00000097534	Gm16675	-	predicted gene, 16675	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-174330845-4	chr2	174330318	174331318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201616, intron 1 of 11)	CpG-8943	729.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5602160-4	chr17	5601666	5602666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	109566.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141858774-4	chr4	141858265	141859265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025994, exon 4 of 4)	3' UTR (NM_025994, exon 4 of 4)	-12406.0	NM_001033875	76701.0	Mm.489680	NM_001033875	ENSMUSG00000062478	Ctrc	1810044E12Rik	chymotrypsin C (caldecrin)	protein-coding	105.0	263.0	179.5	89.5	246.5	103.5
Merged-chr7-43533194-4	chr7	43532677	43533677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021293)	promoter-TSS (NM_021293)	-6.0	NM_021293	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-43306022-4	chr9	43305503	43306503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4760.0	NM_023655	72169.0	Mm.273277	NM_023655	ENSMUSG00000032013	Trim29	1110047J21Rik|2810431N19Rik|4732461M22Rik|AI119726	tripartite motif-containing 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr9-5298260-2	chr9	5297760	5298760	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009807)	promoter-TSS (NM_009807)	-257.0	NM_009807	12362.0	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44686203-4	chr10	44685690	44686690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-227442.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88202169-4	chr7	88201671	88202671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75914.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-121955942-4	chr2	121955448	121956448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290992)	promoter-TSS (NM_001290992)	-53.0	NM_001290992	329506.0	Mm.249405	NM_212450	ENSMUSG00000033411	Ctdspl2	D2Ertd485e|SCP4	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	protein-coding	44.0	114.0	78.0	27.5	106.0	57.0
Merged-chr2-73455793-4	chr2	73455290	73456290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-1901.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152008890-4	chr4	152008400	152009400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033352)	promoter-TSS (NM_001033352)	9.0	NM_001033352	242785.0	Mm.22306	NM_001033352	ENSMUSG00000073700	Klhl21	1810045K06Rik|D330008A20|mKIAA0469	kelch-like 21	protein-coding	45.0	168.5	162.5	61.5	111.5	145.0
Merged-chr2-90580580-4	chr2	90580102	90581102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008982)	promoter-TSS (NM_008982)	45.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131975768-4	chr1	131975250	131976250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145977, intron 1 of 4)	intron (NM_145977, intron 1 of 4)	5141.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	49.5	67.5	50.5	49.0	70.0	54.0
Merged-chr2-91928049-4	chr2	91927557	91928557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007699, exon 2 of 2)	exon (NM_007699, exon 2 of 2)	3645.0	NM_001291481	17242.0	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-21111699-3	chr12	21111209	21112209	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001135192)	promoter-TSS (NM_001135192)	-47.0	NM_001004364	211914.0	Mm.358946	NM_001004364	ENSMUSG00000052632	Asap2	6530401G17Rik|Ddef2|Gm1523|Gm592|PAG3|PAP	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27050658-2	chr17	27050158	27051158	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6646.0	NM_080553	16440.0	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-70313495-2	chr16	70312995	70313995	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028803)	promoter-TSS (NM_028803)	-454.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127070359-4	chr10	127069861	127070861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025982)	promoter-TSS (NM_025982)	-100.0	NM_025982	67125.0	Mm.35650	NM_025982	ENSMUSG00000006736	Tspan31	2700085A14Rik|AW742554|Sas	tetraspanin 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50150773-2	chr17	50150273	50151273	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	39724.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82916369-2	chr18	82915869	82916869	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177464, intron 1 of 5)	intron (NM_001177464, intron 1 of 5)	1737.0	NM_001177464	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-36862211-4	chr3	36861720	36862720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172679)	promoter-TSS (NM_172679)	-886.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114926964-4	chr5	114926467	114927467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359946, intron 1 of 4)	intron (NM_001359946, intron 1 of 4)	3727.0	NM_001359945	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	24.5	82.0	67.5	76.5	194.5	101.5
Merged-chr12-76376896-4	chr12	76376389	76377389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178744, intron 1 of 1)	intron (NM_178744, intron 1 of 1)	6623.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35567473-4	chr8	35566967	35567967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20331.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	8.5	39.0	9.0	44.0	59.5	48.0
Merged-chr19-61140856-4	chr19	61140366	61141366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131953)	promoter-TSS (NR_131953)	-26.0	NR_131954	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	12.5	46.5	28.0	7.5	35.0	16.5
Merged-chr13-113572207-4	chr13	113571708	113572708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46356.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-176818913-4	chr1	176818412	176819412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 1 of 18)	intron (NM_001357390, intron 1 of 18)	4252.0	NM_029756	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126255641-4	chr4	126255152	126256152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145970, intron 1 of 16)	intron (NM_001145970, intron 1 of 16)	667.0	NM_144941	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	13.0	36.0	19.5	12.5	31.0	21.0
Merged-chr4-8917385-4	chr4	8916874	8917874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	166050.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	19.0	45.5	47.5	18.5	65.5	46.0
Merged-chr14-23839852-3	chr14	23839357	23840357	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253364, intron 1 of 27)	intron (NM_001253364, intron 1 of 27)	164348.0	NM_001253375	16531.0	Mm.343607	NM_010610	ENSMUSG00000063142	Kcnma1	5730414M22Rik|BKCa|MaxiK|Slo|Slo1|mSlo|mSlo1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-21566399-4	chr17	21565894	21566894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357347)	promoter-TSS (NM_001357347)	-584.0	NM_001002008	381066.0	Mm.441097	NM_001002008	ENSMUSG00000067931	Zfp948	-	zinc finger protein 948	protein-coding	18.5	72.5	75.0	38.5	37.5	37.0
Merged-chr15-64261791-4	chr15	64261285	64262285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	50888.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31564824-3	chr17	31564356	31565356	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016670)	promoter-TSS (NM_016670)	83.0	NM_016670	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90745396-4	chr2	90744859	90745859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018828)	promoter-TSS (NM_018828)	-11.0	NM_018828	55935.0	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-48063500-4	chr19	48063008	48064008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125796.0	NM_001163267	381229.0	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	0.0	7.5	2.0	0.5	5.0	5.5
Merged-chr8-84647480-2	chr8	84646982	84647982	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15370.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	1.0	5.5	3.0	3.5	4.0	5.5
Merged-chr10-81244786-4	chr10	81244295	81245295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034895, intron 8 of 17)	intron (NM_001034895, intron 8 of 17)	-8140.0	NM_001285855	17179.0	Mm.2918	NM_010768	ENSMUSG00000004933	Matk	CHK|HYL|Ntk|p56ntk	megakaryocyte-associated tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81025504-4	chr13	81024952	81025952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015587, intron 1 of 1)	IAPEY3-int|LTR|ERVK	61378.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-116405303-4	chr12	116404823	116405823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028421)	promoter-TSS (NR_028421)	-79.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	29.0	29.0	23.5	8.5	36.5	22.0
Merged-chr6-143100191-4	chr6	143099689	143100689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029897)	promoter-TSS (NM_029897)	-37.0	NM_001109688	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-143412764-4	chr4	143412270	143413270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355724, exon 1 of 4)	5' UTR (NM_001355724, exon 1 of 4)	344.0	NM_001355724	242736.0	Mm.275953	NM_172877	ENSMUSG00000046862	Pramef8	4732496O08Rik|AU023234	PRAME family member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117779092-4	chr11	117778585	117779585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145439, intron 2 of 19)	intron (NM_145439, intron 2 of 19)	563.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3163821-2	chr11	3163291	3164291	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 9 of 32)	RLTR51B_Mm|LTR|ERVK?	29672.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62551644-4	chr11	62551136	62552136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313984)	promoter-TSS (NM_001313984)	-95.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123572988-4	chr4	123572467	123573467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-43453.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135702787-4	chr5	135702290	135703290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 1 of 15)	L1MC4a|LINE|L1	13645.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-69885608-4	chr2	69885104	69886104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029280)	promoter-TSS (NM_029280)	11.0	NM_029280	75422.0	Mm.10508	NM_029280	ENSMUSG00000051730	Mettl5	2810410A08Rik	methyltransferase like 5	protein-coding	24.0	44.0	34.5	13.0	47.0	24.0
Merged-chr15-28026134-4	chr15	28025645	28026645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081302)	promoter-TSS (NM_001081302)	-297.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28328358-7	chr17	28327866	28328866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011287)	promoter-TSS (NM_011287)	-105.0	NM_011287	19896.0	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-62026761-4	chr14	62026267	62027267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	266212.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57536789-4	chr16	57536306	57537306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-12436.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57995903-4	chr15	57995455	57996455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173862, intron 3 of 3)	L1MB8|LINE|L1	10052.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-8216327-4	chr14	8215818	8216818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305937)	promoter-TSS (NM_001305937)	70.0	NM_001305937	71393.0	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19561757-2	chr7	19561257	19562257	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199149, intron 1 of 12)	CpG	641.0	NM_199149	232947.0	Mm.219662	NM_199149	ENSMUSG00000051403	Ppp1r37	Gm158|Lrrc68	protein phosphatase 1, regulatory subunit 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6336752-2	chr19	6336252	6337252	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001168488, exon 3 of 10)	exon (NM_001168488, exon 3 of 10)	1713.0	NM_008583	17283.0	Mm.12917	NM_008583	ENSMUSG00000024947	Men1	AW045611	multiple endocrine neoplasia 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6416175-2	chr11	6415675	6416675	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008907, intron 1 of 4)	CpG	305.0	NM_008907	268373.0	Mm.5246	NM_008907	ENSMUSG00000071866	Ppia	2700098C05|Cphn|CyP-18|CypA	peptidylprolyl isomerase A	protein-coding	113.0	205.0	229.5	116.0	219.0	192.0
Merged-chr16-10976273-4	chr16	10975734	10976734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	16887.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161735000-4	chr1	161734471	161735471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53524.0	NM_001205243	14103.0	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	4.5	11.5	13.5	9.5	27.5	11.5
Merged-chr2-154603865-4	chr2	154603413	154604413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021534)	promoter-TSS (NM_021534)	-240.0	NM_021534	59038.0	Mm.24673	NM_021534	ENSMUSG00000000876	Pxmp4	3010018P03Rik|Pmp24	peroxisomal membrane protein 4	protein-coding	104.0	230.0	184.0	229.5	425.5	252.5
Merged-chr18-41951287-4	chr18	41950782	41951782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029942)	promoter-TSS (NM_029942)	-88.0	NM_029942	77619.0	Mm.30649	NM_029942	ENSMUSG00000056671	Prelid2	1700003A01Rik|C330008K14Rik	PRELI domain containing 2	protein-coding	24.0	14.5	19.0	31.0	49.5	28.5
Merged-chr10-52284785-3	chr10	52284293	52285293	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025705, intron 3 of 10)	intron (NM_025705, intron 3 of 10)	51174.0	NM_025705	66686.0	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9134283-2	chr13	9133783	9134783	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 3 of 17)	intron (NM_172585, intron 3 of 17)	40402.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117917946-2	chr4	117917446	117918446	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2947.0	NM_146152	230673.0	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	1.0	4.0	6.5	3.5	3.5	3.0
Merged-chr3-88951019-4	chr3	88950502	88951502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022994)	promoter-TSS (NM_022994)	-720.0	NM_001164533	65111.0	Mm.29028	NM_022994	ENSMUSG00000068921	Dap3	4921514D13Rik|DAP-3|MRP-S29|S29mt	death associated protein 3	protein-coding	7.0	21.5	18.0	7.0	20.0	16.5
Merged-chr13-67754845-1	chr13	67754345	67755345	+	1000.0	f1_balb.idr	non-coding (NR_027969, exon 3 of 3)	non-coding (NR_027969, exon 3 of 3)	289.0	NM_001001130	22746.0	Mm.288396	NM_001001130	ENSMUSG00000058331	Zfp85	KRAB19|Rslcan2|Zfp71|Zfp85-rs1	zinc finger protein 85	protein-coding	62.0	70.5	106.5	40.0	70.5	67.5
Merged-chr1-127278527-1	chr1	127278027	127279027	+	1000.0	f0_balb.idr	intron (NM_145128, intron 2 of 17)	intron (NM_145128, intron 2 of 17)	73541.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155050916-4	chr2	155050471	155051471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_015770)	TTS (NM_015770)	23526.0	NM_016661	269378.0	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	15.0	12.5	11.0	28.5	54.5	42.0
Merged-chr10-62948772-4	chr10	62948270	62949270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177372, intron 1 of 20)	intron (NM_177372, intron 1 of 20)	1741.0	NM_177372	327762.0	Mm.21492	NM_177372	ENSMUSG00000036875	Dna2	Dna2l|E130315B21Rik	DNA replication helicase/nuclease 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116628995-4	chr11	116628515	116629515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1996.0	NM_172572	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0.0	3.0	1.0	1.0	31.0	4.5
Merged-chr5-97111740-4	chr5	97111249	97112249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198422)	promoter-TSS (NM_198422)	-153.0	NM_001359913	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112614063-2	chr12	112613563	112614563	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198411, intron 22 of 22)	intron (NM_198411, intron 22 of 22)	-5984.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118632560-4	chr9	118632056	118633056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 3 of 27)	intron (NM_133721, intron 3 of 27)	25847.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61448475-4	chr18	61448001	61449001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36106.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	48.0	196.0	104.5	44.5	183.5	104.5
Merged-chr12-110591678-4	chr12	110591066	110592066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033340, exon 1 of 1)	non-coding (NR_033340, exon 1 of 1)	192.0	NR_033340	319786.0	Mm.129691	NR_033340		B930059L03Rik	-	RIKEN cDNA B930059L03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31125654-4	chr6	31125180	31126180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-62587.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80622491-4	chr10	80621967	80622967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134002)	promoter-TSS (NM_134002)	-313.0	NM_134002	103236.0	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132732545-4	chr4	132732044	132733044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201368)	promoter-TSS (NM_201368)	2.0	NM_201368	381560.0	Mm.44558	NM_201368	ENSMUSG00000037752	Xkr8	4931440N07Rik|AI597014|Gm1031|XRG8|mXkr8	X-linked Kx blood group related 8	protein-coding	14.0	26.5	18.0	11.0	26.0	17.5
Merged-chr6-128799658-4	chr6	128799150	128800150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-11009.0	NM_008527	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	54.0	111.0	70.0	42.5	111.5	76.5
Merged-chr3-89226339-2	chr3	89225839	89226839	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_030579)	TTS (NR_030579)	859.0	NR_030579	100124470.0		NR_030579	ENSMUSG00000076255	Mir92b	Mirn92b|mir-92b|mmu-mir-92b	microRNA 92b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4325187-4	chr8	4324699	4325699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010485)	promoter-TSS (NM_010485)	-11.0	NR_033527	20300.0	Mm.7275	NM_009138	ENSMUSG00000023235	Ccl25	A130072A22Rik|AI852536|CKb15|Scya25|TECK	chemokine (C-C motif) ligand 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10041069-4	chr17	10040560	10041560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-265194.0	NR_045433	71092.0	Mm.243827	NR_045433		4930452A19Rik	4933424P20Rik	RIKEN cDNA 4930452A19 gene	ncRNA	10.0	30.5	20.0	2.0	18.0	9.0
Merged-chr6-34944659-4	chr6	34944152	34945152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001025573)	TTS (NM_001025573)	23704.0	NM_009292	20899.0	Mm.5171	NM_009292	ENSMUSG00000029848	Stra8	-	stimulated by retinoic acid gene 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83455496-4	chr6	83454989	83455989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347313, intron 1 of 11)	intron (NM_001347313, intron 1 of 11)	903.0	NM_001347313	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33756631-4	chr16	33756083	33757083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 12 of 14)	intron (NM_175256, intron 12 of 14)	-37454.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191724851-4	chr1	191724329	191725329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134829, intron 2 of 7)	intron (NM_001134829, intron 2 of 7)	6434.0	NM_001134829	226856.0	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-52190590-4	chr5	52190088	52191088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007839)	promoter-TSS (NM_007839)	-42.0	NM_001042620	13204.0	Mm.993	NM_007839	ENSMUSG00000029169	Dhx15	DBP1|DEAH9|Ddx15|HRH2|mDEAH9	DEAH (Asp-Glu-Ala-His) box polypeptide 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88296979-4	chr3	88296462	88297462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009836)	promoter-TSS (NM_009836)	37.0	NM_001357024	76927.0	Mm.273330	NM_029801	ENSMUSG00000010538	Tsacc	1700021C14Rik|SIP	TSSK6 activating co-chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84947219-2	chr15	84946719	84947719	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033273, exon 10 of 10)	3' UTR (NM_001033273, exon 10 of 10)	4404.0	NR_037206	100526461.0		NR_037206	ENSMUSG00000080441	Mir1249	mir-1249|mmu-mir-1249	microRNA 1249	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38352254-4	chr18	38351753	38352753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-13260.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-97962295-4	chr16	97961774	97962774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175428, intron 1 of 2)	CpG	348.0	NM_001081685	114565.0	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding	10.0	33.0	30.0	41.0	34.0	23.5
Merged-chr7-123328536-2	chr7	123328036	123329036	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 2 of 19)	intron (NM_001316713, intron 2 of 19)	41379.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29485671-2	chr17	29485171	29486171	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-5374.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.0	5.5	1.5	0.0	0.5	0.0
Merged-chr2-5861860-4	chr2	5861350	5862350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_152181)	TTS (NR_152181)	1084.0	NR_152181	791411.0	Mm.442531	NR_152181		Gm13199	-	predicted gene 13199	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-52273202-4	chr10	52272688	52273688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025705, intron 2 of 10)	intron (NM_025705, intron 2 of 10)	39569.0	NM_025705	66686.0	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121837790-4	chr5	121837308	121838308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008507)	promoter-TSS (NM_008507)	-949.0	NM_008507	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	9.5	54.0	51.0	23.0	57.0	49.5
Merged-chr4-117289344-7	chr4	117288850	117289850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001310731, exon 1 of 11)	5' UTR (NM_001310731, exon 1 of 11)	105.0	NM_001310730	66743.0	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4164726-4	chr19	4164227	4165227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_134148, exon 10 of 10)	3' UTR (NM_134148, exon 10 of 10)	-1344.0	NR_153659	58988.0	Mm.271937	NM_021485	ENSMUSG00000024830	Rps6kb2	S6K-beta-2|S6K2	ribosomal protein S6 kinase, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44264385-4	chr19	44263877	44264877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-29299.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	31.5	66.0	34.0	29.5	62.5	33.0
Merged-chr12-52503824-4	chr12	52503357	52504357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12220.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-10682955-4	chr5	10682474	10683474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV16_I-int|LTR|ERVK	-182055.0	NR_003596	623849.0	Mm.335888	NR_003596	ENSMUSG00000091422	Gm6455	EG623849	predicted gene 6455	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79159578-4	chr8	79159059	79160059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 8 of 14)	MLT1J|LTR|ERVL-MaLR	89024.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103281924-4	chr11	103281434	103282434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14533.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	0.5	12.0	11.0	11.0	18.5	12.5
Merged-chr15-78597973-4	chr15	78597470	78598470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028195, intron 1 of 12)	intron (NM_028195, intron 1 of 12)	923.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	47.0	86.0	58.0	37.0	63.0	74.5
Merged-chr4-138943914-4	chr4	138943426	138944426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-23186.0	NM_025786	66825.0	Mm.252312	NM_025786	ENSMUSG00000070661	Rnf186	9130020G10Rik	ring finger protein 186	protein-coding	40.0	80.5	50.0	24.5	41.0	55.0
Merged-chr2-45194862-2	chr2	45194362	45195362	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77420.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10605455-4	chr19	10604949	10605949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015735)	promoter-TSS (NM_015735)	-176.0	NM_015735	13194.0	Mm.289915	NM_015735	ENSMUSG00000024740	Ddb1	127kDa|AA408517|p127-Ddb1	damage specific DNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-101766795-4	chr2	101766308	101767308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 3 of 8)	intron (NM_001355625, intron 3 of 8)	30899.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24550435-2	chr17	24549935	24550935	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013630, exon 1 of 46)	exon (NM_013630, exon 1 of 46)	485.0	NM_013630	18763.0	Mm.30435	NM_013630	ENSMUSG00000032855	Pkd1	PC1|mFLJ00285	polycystin 1, transient receptor poteintial channel interacting	protein-coding	24.0	132.0	71.0	45.0	79.0	50.5
Merged-chr1-39525967-4	chr1	39525470	39526470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9731.0	NM_028043	52846.0	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76080583-4	chr15	76080091	76081091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356629, intron 1 of 12)	CpG	279.0	NM_001164600	67959.0	Mm.29965	NM_028364	ENSMUSG00000002524	Puf60	2410104I19Rik|2810454F19Rik|SIAHBP1	poly-U binding splicing factor 60	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95679974-3	chr13	95679475	95680475	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 17 of 35)	intron (NM_027711, intron 17 of 35)	-16945.0	NM_010170	14064.0	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	15.0	5.0	1.0	40.0	60.0	61.0
Merged-chr6-113645050-4	chr6	113644533	113645533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 1 of 11)	intron (NM_001113553, intron 1 of 11)	6566.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34388593-4	chr7	34388121	34389121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025948, intron 1 of 10)	intron (NM_025948, intron 1 of 10)	1084.0	NM_001360654	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-43748607-7	chr2	43748099	43749099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153820)	promoter-TSS (NM_153820)	-225.0	NM_001301832	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21015946-4	chr9	21015459	21016459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010493)	promoter-TSS (NM_010493)	19.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3914293-4	chr11	3913773	3914773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_153142, exon 1 of 2)	5' UTR (NM_153142, exon 1 of 2)	391.0	NM_153142	103710.0	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-10233086-4	chr1	10232584	10233584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102430)	promoter-TSS (NM_001102430)	-414.0	NM_001102430	211673.0	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75564376-4	chr11	75563871	75564871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 9 of 13)	intron (NM_001199284, intron 9 of 13)	12942.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	35.5	180.0	111.5	96.0	222.0	161.0
Merged-chr11-54156085-4	chr11	54155580	54156580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR50|LTR|ERVL	55156.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32135808-4	chr5	32135306	32136306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008037)	promoter-TSS (NM_008037)	-666.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64222814-6	chr1	64222327	64223327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101438.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21090543-4	chr14	21090040	21091040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243041, intron 1 of 10)	ORR1D2|LTR|ERVL-MaLR	14388.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	0.0	2.5	1.5	1.0	2.5	0.5
Merged-chr3-95669019-7	chr3	95668512	95669512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	10291.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16747471-4	chr1	16746967	16747967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59011.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	37.5	33.5	29.5	41.0	68.0	35.0
Merged-chr12-71051251-4	chr12	71050701	71051701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081195, intron 11 of 23)	B3|SINE|B2	35234.0	NM_001081195	238247.0	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-114175364-4	chr2	114174879	114175879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009702)	promoter-TSS (NM_009702)	-40.0	NM_001290788	11834.0	Mm.2545	NM_009702	ENSMUSG00000040383	Aqr	AW495846|mKIAA0560	aquarius	protein-coding	4.5	23.5	31.5	6.5	21.0	38.0
Merged-chr7-143070685-2	chr7	143070185	143071185	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_020277)	TTS (NM_020277)	1317.0	NM_001115085	56844.0	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	0.0	0.0	0.0	0.0	0.0	7.0
Merged-chr5-122502321-6	chr5	122501854	122502854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009722)	promoter-TSS (NM_009722)	-129.0	NR_027838	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167735074-4	chr2	167734574	167735574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43897.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108085424-4	chr3	108084922	108085922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346665)	promoter-TSS (NM_001346665)	4.0	NM_001289720	109674.0	Mm.274335	NM_028779	ENSMUSG00000027889	Ampd2	1200014F01Rik|AI552571|Ampd-2|m4521Dajl	adenosine monophosphate deaminase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105225164-4	chr8	105224670	105225670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145604)	promoter-TSS (NM_145604)	-18.0	NM_145604	234678.0	Mm.27186	NM_145604	ENSMUSG00000031889	D230025D16Rik	BC006874|Lin10	RIKEN cDNA D230025D16 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-13393598-4	chr13	13393088	13394088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031999)	promoter-TSS (NM_031999)	36.0	NM_031999	83924.0	Mm.379269	NM_031999	ENSMUSG00000021306	Gpr137b	AI788917|AU016435|AW546472|C730041E01|C80550|C80741|D13Abb1e|Tm7sf1	G protein-coupled receptor 137B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21225197-4	chr11	21224688	21225688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13844.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	20.0	57.0	48.0	13.5	62.5	33.5
Merged-chr11-98438416-2	chr11	98437916	98438916	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001003817)	TTS (NM_001003817)	572.0	NM_025559	103742.0	Mm.259614	NM_025559	ENSMUSG00000002580	Mien1	1810046J19Rik|AI463380|Rdx12	migration and invasion enhancer 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57534936-4	chr6	57534446	57535446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175523, intron 1 of 6)	intron (NM_175523, intron 1 of 6)	480.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46483788-4	chr19	46483270	46484270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 11 of 11)	intron (NM_001025391, intron 11 of 11)	-17878.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34823556-4	chr1	34823073	34824073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160236, intron 3 of 6)	intron (NM_001160236, intron 3 of 6)	19477.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165766671-4	chr1	165766178	165767178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149310, intron 2 of 4)	intron (NR_149310, intron 2 of 4)	2920.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29373568-4	chr11	29373083	29374083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176841)	promoter-TSS (NM_176841)	-589.0	NM_176841	108686.0	Mm.338284	NM_176841	ENSMUSG00000032740	Ccdc88a	A430106J12Rik|AI848406|Ape|C130096N06Rik|C330012F17Rik|D130005J21Rik|Girdin|Giv|Grdn|Hkrp1	coiled coil domain containing 88A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27376272-4	chr14	27375779	27376779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 3 of 10)	intron (NM_027871, intron 3 of 10)	14890.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	61.5	143.5	114.0	39.5	72.0	57.0
Merged-chr2-165992615-4	chr2	165992087	165993087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008679)	promoter-TSS (NM_008679)	-50.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113237731-4	chr6	113237235	113238235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026849)	promoter-TSS (NM_026849)	-108.0	NM_001362183	97287.0	Mm.197816	NM_026849	ENSMUSG00000030269	Mtmr14	1110061O04Rik|AW553738|C76151	myotubularin related protein 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171287977-4	chr1	171287488	171288488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013919)	promoter-TSS (NM_013919)	-27.0	NM_013919	30941.0	Mm.27510	NM_013919	ENSMUSG00000053483	Usp21	ESTM28|Usp16|Usp23|W53272	ubiquitin specific peptidase 21	protein-coding	9.0	41.0	31.5	18.5	38.5	21.0
Merged-chr7-121707474-4	chr7	121706970	121707970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033173)	promoter-TSS (NM_001033173)	-217.0	NM_001033173	76179.0	Mm.122538	NM_001033173	ENSMUSG00000063317	Usp31	6330567E21Rik|mKIAA1203	ubiquitin specific peptidase 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84661265-3	chr8	84660749	84661749	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010499)	TTS (NM_010499)	1603.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	5.5	22.5	25.5	12.5	39.5	24.5
Merged-chr17-35879751-4	chr17	35879260	35880260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026987)	promoter-TSS (NM_026987)	-18.0	NM_026987	69192.0	Mm.390986	NM_026987	ENSMUSG00000024422	Dhx16	2410006N22Rik|DBP2|Ddx16|mKIAA0577	DEAH (Asp-Glu-Ala-His) box polypeptide 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59089933-4	chr15	59089425	59090425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	-7899.0	NM_144800	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96502214-4	chr10	96501721	96502721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-114780.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17586953-3	chr6	17586485	17587485	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50025.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	3.0	26.5	6.5	0.0	2.5	0.5
Merged-chr2-101796555-4	chr2	101796134	101797134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	CpG	1073.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	145.5	290.5	194.5	70.5	178.0	122.5
Merged-chr17-56133957-4	chr17	56133460	56134460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013662)	promoter-TSS (NM_013662)	-108.0	NM_013662	20359.0	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-22795214-2	chr2	22794735	22795735	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	20908.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-41470071-2	chr16	41469571	41470571	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361281, intron 2 of 8)	Lx8|LINE|L1	-62755.0	NM_001347236	268890.0	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Gm29907|Lam|Lamp	limbic system-associated membrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76110845-4	chr14	76110364	76111364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013745)	promoter-TSS (NM_013745)	-27.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64242678-4	chr15	64242186	64243186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	69987.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-142082517-2	chr4	142082017	142083017	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-1781.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44529474-4	chr11	44528908	44529908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 2 of 5)	intron (NM_001166553, intron 2 of 5)	10031.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191224962-4	chr1	191224465	191225465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151547, intron 1 of 1)	intron (NR_151547, intron 1 of 1)	511.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50603915-4	chr9	50603420	50604420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025848)	promoter-TSS (NM_025848)	19.0	NM_013897	30057.0	Mm.335149	NM_013897	ENSMUSG00000039016	Timm8b	Tim8b	translocase of inner mitochondrial membrane 8B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145241088-4	chr4	145240550	145241550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	5820.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32471756-2	chr9	32471256	32472256	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 2 of 8)	RSINE1|SINE|B4	69696.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41761809-1	chr19	41761309	41762309	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	14848.0	NR_040320	100502871.0	Mm.394485	NR_040320		Gm19424	-	predicted gene, 19424	ncRNA	6.0	25.0	8.5	4.5	4.0	3.0
Merged-chr2-72979124-5	chr2	72978571	72979571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045269)	promoter-TSS (NR_045269)	210.0	NM_001098425	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47394408-4	chr17	47393912	47394912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008189)	TTS (NM_008189)	6194.0	NM_008189	14913.0	Mm.16224	NM_008189	ENSMUSG00000023982	Guca1a	GC-A|Gcap1|Guca1|mGCAP1	guanylate cyclase activator 1a (retina)	protein-coding	11.0	58.5	45.5	14.0	24.5	23.0
Merged-chr7-81861299-4	chr7	81860811	81861811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111910, intron 1 of 7)	intron (NR_111910, intron 1 of 7)	-1376.0	NM_001291282	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	4.5	12.0	10.5	11.0	14.0	10.5
Merged-chr2-19145569-4	chr2	19145051	19146051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53567.0	NM_001271563	70882.0	Mm.276696	NM_001081083	ENSMUSG00000037683	Armc3	4921513G22Rik	armadillo repeat containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95425064-2	chr11	95424564	95425564	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359107, intron 1 of 9)	PB1D7|SINE|Alu	10981.0	NM_001359107	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117435126-4	chr10	117434635	117435635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12300.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	51.0	155.0	117.5	78.0	168.5	139.5
Merged-chr12-102440318-3	chr12	102439822	102440822	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011175)	promoter-TSS (NM_011175)	-509.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	63.0	135.5	113.0	66.5	133.5	110.5
Merged-chr1-153754165-5	chr1	153753760	153754760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011882, exon 4 of 9)	exon (NM_011882, exon 4 of 9)	4834.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60210519-4	chr11	60210022	60211022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358314)	promoter-TSS (NM_001358314)	-51.0	NM_001358314	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180042514-4	chr2	180042008	180043008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011969)	promoter-TSS (NM_011969)	25.0	NM_178750	269397.0	Mm.63068	NM_178750	ENSMUSG00000039086	Ss18l1	A230053O16Rik|CREST	SS18, nBAF chromatin remodeling complex subunit like 1	protein-coding	97.0	185.5	197.5	68.0	179.0	207.0
Merged-chr13-29984417-4	chr13	29983901	29984901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289920)	promoter-TSS (NM_001289920)	-10.0	NM_001359994	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84172454-4	chr12	84171945	84172945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 2 of 12)	intron (NM_001163501, intron 2 of 12)	21570.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-125764586-4	chr10	125764084	125765084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41B|LTR|ERVL	-201635.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123374335-4	chr8	123373830	123374830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359076, intron 1 of 16)	CpG	619.0	NM_001286363	66855.0	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96562781-4	chr15	96562271	96563271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	79191.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69500766-4	chr12	69500269	69501269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-25219.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	1.5	2.5	3.5	3.0	2.0	2.5
Merged-chr2-132846632-4	chr2	132846139	132847139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024385)	promoter-TSS (NM_001024385)	-27.0	NM_001024385	66586.0	Mm.357342	NM_025646	ENSMUSG00000027357	Crls1	0610009I22Rik|4930557M15Rik|5730490M08Rik	cardiolipin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59751050-7	chr9	59750530	59751530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172071)	promoter-TSS (NM_001172071)	-144.0	NM_173018	270163.0	Mm.249545	NM_173018	ENSMUSG00000039585	Myo9a	4732465J09Rik|C130068I12Rik|C230003M11	myosin IXa	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-54692713-4	chr3	54692210	54693210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019995)	promoter-TSS (NM_019995)	-105.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106168844-4	chr8	106168389	106169389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357382)	promoter-TSS (NM_001357382)	-32.0	NM_001357381	330836.0	Mm.46749	NM_178798	ENSMUSG00000031904	Slc7a6	AI643885|LAT-2|LAT3|y+LAT-2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3802979-6	chr5	3802510	3803510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033173)	promoter-TSS (NR_033173)	114.0	NM_001289528	70797.0	Mm.130148	NM_001003909	ENSMUSG00000040351	Ankib1	2310061P20Rik|4631416I11Rik|AW494740|C80642|mKIAA1386	ankyrin repeat and IBR domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34142652-3	chr17	34142147	34143147	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2769.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	86.0	211.0	158.5	48.5	112.5	74.5
Merged-chr3-138521456-4	chr3	138520955	138521955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4736.0	NM_007917	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	0.5	3.0	4.0	6.5	4.5	8.0
Merged-chr8-72317258-4	chr8	72316757	72317757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1805.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	16.0	74.5	37.5	68.5	165.0	66.0
Merged-chr10-77622341-4	chr10	77621875	77622875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019803)	promoter-TSS (NM_019803)	54.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85985763-4	chr12	85985253	85986253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	93288.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116649088-4	chr3	116648580	116649580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008246, intron 2 of 11)	intron (NM_008246, intron 2 of 11)	13597.0	NM_008246	15247.0	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	47.5	83.0	72.5	26.0	79.5	73.5
Merged-chr7-45916690-2	chr7	45916190	45917190	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_144801, exon 8 of 8)	3' UTR (NM_144801, exon 8 of 8)	4159.0	NM_001146346	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	0.0	0.5	2.5	0.0	0.0	0.0
Merged-chr13-30974058-4	chr13	30973563	30974563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025588)	promoter-TSS (NM_025588)	-16.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95824428-4	chr15	95823937	95824937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_155276)	TTS (NR_155276)	5635.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150202898-4	chr4	150202396	150203396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1761.0	NM_009802	12353.0	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	44.5	56.0	61.0	22.5	30.5	49.5
Merged-chr19-37174247-3	chr19	37173739	37174739	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290828, exon 2 of 11)	exon (NM_001290828, exon 2 of 11)	396.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126200481-4	chr7	126199999	126200999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311143)	promoter-TSS (NM_001311143)	2.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117268219-4	chr8	117267719	117268719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	11200.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181497107-4	chr2	181496599	181497599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291201)	promoter-TSS (NM_001291201)	-43.0	NM_001291203	66314.0	Mm.136648	NM_025482	ENSMUSG00000000827	Tpd52l2	2810411G23Rik|AU016537|C86069|D54	tumor protein D52-like 2	protein-coding	51.5	190.0	131.0	101.5	163.5	161.0
Merged-chr6-46281201-4	chr6	46280698	46281698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004357, intron 10 of 23)	L1MB1|LINE|L1	-963198.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	20.0	14.5	14.0	16.0	14.5	11.0
Merged-chr5-117978082-4	chr5	117977592	117978592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346588, intron 2 of 11)	intron (NM_001346588, intron 2 of 11)	1322.0	NM_001346588	231670.0	Mm.21912	NM_145564	ENSMUSG00000032898	Fbxo21	2810425J22Rik|AU016673	F-box protein 21	protein-coding	4.5	11.0	8.0	4.5	4.0	5.0
Merged-chr1-131974270-4	chr1	131973762	131974762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145977, intron 1 of 4)	intron (NM_145977, intron 1 of 4)	3653.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-28480175-4	chr6	28479680	28480680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019776)	promoter-TSS (NM_019776)	-168.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70883006-4	chr14	70882491	70883491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7116.0	NM_001302095	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	2.0	21.0	16.0	40.5	50.5	21.5
Merged-chr4-88094584-4	chr4	88094102	88095102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081184)	promoter-TSS (NM_001081184)	-28.0	NM_001081184	230393.0	Mm.287210	NM_001081184	ENSMUSG00000038368	Focad	-	focadhesin	protein-coding	10.0	16.5	16.0	0.0	3.0	2.5
Merged-chr7-29231625-4	chr7	29231127	29232127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033525, intron 1 of 2)	intron (NM_001033525, intron 1 of 2)	895.0	NM_001033525	52150.0	Mm.24877	NM_001033525	ENSMUSG00000046410	Kcnk6	D7Ertd764e|Toss|Twik2	potassium inwardly-rectifying channel, subfamily K, member 6	protein-coding	56.0	106.5	82.5	34.5	159.5	60.5
Merged-chr9-99180507-4	chr9	99180035	99181035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40324.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	13.0	43.5	30.0	10.5	55.5	23.5
Merged-chr3-127634278-4	chr3	127633746	127634746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009718, exon 2 of 2)	exon (NM_009718, exon 2 of 2)	1110.0	NM_009718	11924.0	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding	2.5	1.0	1.5	0.0	0.0	0.0
Merged-chr13-100152852-4	chr13	100152351	100153351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126182, intron 12 of 15)	intron (NM_001126182, intron 12 of 15)	27996.0	NM_011420	20595.0	Mm.2025	NM_011420	ENSMUSG00000021645	Smn1	AI849087|Gemin1|Smn	survival motor neuron 1	protein-coding	8.5	25.5	27.0	8.0	63.5	26.0
Merged-chr12-4196790-2	chr12	4196290	4197290	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_138305, exon 6 of 21)	exon (NM_138305, exon 6 of 21)	37175.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182562804-4	chr1	182562309	182563309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2198.0	NM_001145806	170725.0	Mm.189201	NM_130890	ENSMUSG00000038599	Capn8	nCL-2|nCL-2'	calpain 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83381808-4	chr6	83381296	83382296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347313, intron 5 of 11)	intron (NM_001347313, intron 5 of 11)	19306.0	NR_105793	102465194.0		NR_105793	ENSMUSG00000099045	Mir6374	Gm27292|mmu-mir-6374	microRNA 6374	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136141523-1	chr4	136141023	136142023	+	1000.0	f1_balb.idr	Intergenic	B1_Mur3|SINE|Alu	-2299.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	36.0	147.5	75.0	32.5	84.5	65.5
Merged-chr2-25581860-4	chr2	25581402	25582402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1803.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6522961-4	chr11	6522494	6523494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2036.0	NM_178440	246177.0	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	5.0	10.5	1.5	1.5	2.0	8.5
Merged-chr7-30094934-7	chr7	30094428	30095428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011981)	promoter-TSS (NM_011981)	-148.0	NM_011981	26466.0	Mm.195092	NM_011981	ENSMUSG00000049421	Zfp260	AI480997|Ozrf1|PEX1|Zfp63|Znf260	zinc finger protein 260	protein-coding	33.0	45.5	74.5	52.5	129.5	105.5
Merged-chr1-143777804-3	chr1	143777332	143778332	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013835)	promoter-TSS (NM_013835)	554.0	NM_019562	56207.0	Mm.261004	NM_019562	ENSMUSG00000018189	Uchl5	5830413B11Rik|Uch37	ubiquitin carboxyl-terminal esterase L5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-63338565-4	chr10	63338064	63339064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019812, intron 1 of 8)	CpG	471.0	NM_019812	93759.0	Mm.351459	NM_019812	ENSMUSG00000020063	Sirt1	AA673258|SIR2L1|Sir2|Sir2a|Sir2alpha	sirtuin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-4807776-4	chr1	4807270	4808270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008866)	promoter-TSS (NM_008866)	-53.0	NM_001355712	18777.0	Mm.299955	NM_008866	ENSMUSG00000025903	Lypla1	APT-1|Gm39587|LPL-I|Pla1a	lysophospholipase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75181236-2	chr14	75180736	75181736	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	44811.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-20057759-4	chr3	20057267	20058267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009210)	promoter-TSS (NM_009210)	-44.0	NM_009210	20585.0	Mm.209650	NM_009210	ENSMUSG00000002428	Hltf	AF010600|BC057116|P113|Smarca3|Snf2l3	helicase-like transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55131157-4	chr1	55130671	55131671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025283)	promoter-TSS (NM_025283)	-74.0	NM_001310585	19070.0	Mm.291037	NM_025283	ENSMUSG00000025979	Mob4	2610109B12Rik|Mobkl3|Phocn|Prei3	MOB family member 4, phocein	protein-coding	13.0	14.5	4.0	13.0	14.5	4.5
Merged-chr9-103234727-4	chr9	103234218	103235218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4432.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-30864853-4	chr3	30864363	30865363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286994, intron 1 of 3)	intron (NM_001286994, intron 1 of 3)	8913.0	NM_001286994	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51921569-4	chr11	51921072	51922072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46059.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-75297192-4	chr3	75296674	75297674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27096.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101647440-4	chr4	101646981	101647981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175036)	promoter-TSS (NM_175036)	-302.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	14.5	59.5	38.5	13.5	20.5	21.5
Merged-chr12-81755799-2	chr12	81755299	81756299	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001174107, intron 2 of 10)	intron (NM_001174107, intron 2 of 10)	25371.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-47533564-4	chr8	47533057	47534057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177240)	promoter-TSS (NM_177240)	-87.0	NM_177240	320714.0	Mm.39461	NM_177240	ENSMUSG00000038102	Trappc11	AW558465|D030016E14Rik|R75422	trafficking protein particle complex 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8574745-4	chr11	8574247	8575247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	89788.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	70.0	84.0	123.5	53.5	78.0	84.0
Merged-chr1-163930004-4	chr1	163929504	163930504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028776, exon 1 of 14)	5' UTR (NM_028776, exon 1 of 14)	239.0	NM_028776	240880.0	Mm.389213	NM_028776	ENSMUSG00000026584	Scyl3	1200016D23Rik|6030457O16|AW214499|Pace1	SCY1-like 3 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-48036925-2	chr4	48036425	48037425	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-8380.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-144223155-1	chr5	144222655	144223655	+	1000.0	f1_c57bl6.idr	intron (NM_027410, intron 1 of 24)	intron (NM_027410, intron 1 of 24)	460.0	NM_001356992	70381.0	Mm.239412	NM_027410	ENSMUSG00000066621	Tecpr1	2210010N04Rik|mKIAA1358	tectonin beta-propeller repeat containing 1	protein-coding	5.5	25.0	19.5	27.0	32.0	20.5
Merged-chr4-95161453-4	chr4	95160954	95161954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-109232.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101287181-2	chr15	101286681	101287681	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026566, exon 2 of 3)	exon (NM_026566, exon 2 of 3)	2880.0	NM_026566	68118.0	Mm.482360	NM_026566	ENSMUSG00000037204	Atg101	9430023L20Rik|AA407441|AU022967	autophagy related 101	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4849582-4	chr11	4849072	4850072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361676)	promoter-TSS (NM_001361676)	-28.0	NM_010898	18016.0	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	74.5	181.0	154.5	87.5	159.5	139.0
Merged-chr14-55591097-4	chr14	55590606	55591606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011190)	promoter-TSS (NM_011190)	-5.0	NM_001029855	19188.0	Mm.371573	NM_011190	ENSMUSG00000079197	Psme2	AA589371|AI788882|PA28b	proteasome (prosome, macropain) activator subunit 2 (PA28 beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-20969620-4	chr2	20969058	20970058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033225, exon 2 of 2)	non-coding (NR_033225, exon 2 of 2)	684.0	NR_033225	433408.0	Mm.386941	NR_033225		Gm13375	-	predicted gene 13375	ncRNA	16.0	22.5	9.5	16.0	21.0	9.0
Merged-chr9-99072718-4	chr9	99072232	99073232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 9 of 23)	intron (NM_029094, intron 9 of 23)	-37042.0	NM_001080776	382097.0	Mm.293727	NM_001080776	ENSMUSG00000044860	Gm1123	AV052824|CLSP	predicted gene 1123	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-45158770-4	chr16	45158306	45159306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356453)	promoter-TSS (NM_001356453)	-23.0	NM_001356366	67841.0	Mm.41775	NM_026402	ENSMUSG00000022663	Atg3	2610016C12Rik|APG3|Apg3l|Atg3l|PC3-96	autophagy related 3	protein-coding	55.0	108.0	116.0	78.0	203.5	124.0
Merged-chr14-70057453-1	chr14	70056953	70057953	+	1000.0	f0_c57.idr	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-19992.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-23850583-4	chr5	23850138	23851138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045040)	promoter-TSS (NR_045040)	41.0	NR_045040	67194.0	Mm.423733	NR_045040	ENSMUSG00000097180	2700038G22Rik	-	RIKEN cDNA 2700038G22 gene	ncRNA	126.0	199.0	184.0	8.0	37.5	14.0
Merged-chr9-64811975-1	chr9	64811475	64812475	+	1000.0	f0_balb.idr	intron (NM_001162917, intron 2 of 34)	CpG-15087	964.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131087066-4	chr1	131086574	131087574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	10769.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	4.0	13.5	26.0	22.0	58.0	38.0
Merged-chr9-106821840-4	chr9	106821335	106822335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001015507)	promoter-TSS (NM_001015507)	-141.0	NM_001015507	321006.0	Mm.440089	NM_001015507	ENSMUSG00000040325	Dcaf1	AI447437|B930007L02Rik|Vprbp|mKIAA0800	DDB1 and CUL4 associated factor 1	protein-coding	42.5	117.5	62.0	25.0	78.5	28.0
Merged-chr11-107341957-2	chr11	107341457	107342457	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	B3A|SINE|B2	128763.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147072042-3	chr5	147071535	147072535	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	4537.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	4.0	8.5	7.5	18.5	97.5	52.5
Merged-chr17-48346441-4	chr17	48345949	48346949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001272078)	promoter-TSS (NM_001272078)	48.0	NM_001272078	83433.0	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115500590-4	chr5	115500081	115501081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E1|LTR|ERVL-MaLR	-6095.0	NM_011223	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	89.5	410.5	198.0	60.0	216.5	145.0
Merged-chr14-66232722-4	chr14	66232207	66233207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-18883.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-77310082-4	chr5	77309592	77310592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153798)	promoter-TSS (NM_153798)	-6.0	NM_019836	56412.0	Mm.129136	NM_019836	ENSMUSG00000036285	Noa1	2610024G14Rik|AU022345|AtNOS1|mAtNOS1	nitric oxide associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11480762-2	chr8	11480262	11481262	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_126558)	TTS (NR_126558)	-2263.0	NM_011227	19332.0	Mm.37632	NM_011227	ENSMUSG00000031504	Rab20	AA536966|D8Ertd350e	RAB20, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65951136-4	chr17	65950623	65951623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023053)	promoter-TSS (NM_023053)	64.0	NM_023053	65960.0	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	0.0	0.0	2.0	1.5	2.0	0.0
Merged-chr3-106553583-4	chr3	106553085	106554085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286986, intron 2 of 8)	intron (NM_001286986, intron 2 of 8)	-5783.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	25.5	60.5	44.0	26.5	87.0	45.5
Merged-chr7-12897778-4	chr7	12897300	12898300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001447)	promoter-TSS (NM_001001447)	-9.0	NM_001290438	232878.0	Mm.40706	NM_001001447	ENSMUSG00000054715	Zscan22	AW227621|D530006B18Rik|Hkr2	zinc finger and SCAN domain containing 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118673867-2	chr9	118673369	118674369	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 11 of 27)	RSINE1|SINE|B4	-37823.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	149.5	407.0	294.0	124.0	375.5	233.5
Merged-chr8-27023763-4	chr8	27023274	27024274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153592)	promoter-TSS (NM_153592)	-25.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75106799-4	chr11	75106290	75107290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 13 of 18)	L2a|LINE|L2	-40799.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-124936994-4	chr4	124936506	124937506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177573)	promoter-TSS (NM_177573)	-42.0	NM_177573	194268.0	Mm.266907	NM_177573	ENSMUSG00000044730	9930104L06Rik	C1orf109	RIKEN cDNA 9930104L06 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91411717-2	chr1	91411217	91412217	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019479, exon 4 of 4)	3' UTR (NM_019479, exon 4 of 4)	1505.0	NM_019479	55927.0	Mm.280029	NM_019479	ENSMUSG00000067071	Hes6	AI326893|bHLHb41	hairy and enhancer of split 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83738323-4	chr8	83737823	83738823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 1 of 19)	intron (NM_011925, intron 1 of 19)	2988.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	133.5	376.0	215.5	104.0	276.5	201.0
Merged-chr11-23846113-4	chr11	23845587	23846587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49183.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104341420-4	chr8	104340915	104341915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024217, intron 1 of 4)	intron (NM_024217, intron 1 of 4)	821.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120120565-1	chr1	120120065	120121065	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_001172074)	promoter-TSS (NM_001172074)	354.0	NM_001037999	13167.0	Mm.2785	NM_007830	ENSMUSG00000026385	Dbi	ACBD1|Acbp|EP|endozepine	diazepam binding inhibitor	protein-coding	27.0	64.5	47.5	49.5	65.5	43.0
Merged-chr18-37935576-4	chr18	37935086	37936086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305981)	promoter-TSS (NM_001305981)	-110.0	NM_001305980	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134094028-4	chr1	134093529	134094529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14874.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-140066796-4	chr2	140066287	140067287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110350)	promoter-TSS (NR_110350)	18.0	NM_001159640	75812.0	Mm.293449	NM_175225	ENSMUSG00000039033	Tasp1	4930485D02Rik|AW986064	taspase, threonine aspartase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98907641-4	chr11	98907118	98908118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011799)	promoter-TSS (NM_011799)	-271.0	NM_001025779	23834.0	Mm.20912	NM_011799	ENSMUSG00000017499	Cdc6	CDC18L	cell division cycle 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-55146887-4	chr18	55146382	55147382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-154291.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-44355275-3	chr12	44354765	44355765	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146031, intron 1 of 27)	intron (NM_001146031, intron 1 of 27)	26380.0	NM_001146031	319504.0	Mm.208439	NM_176930	ENSMUSG00000020598	Nrcam	Bravo|C030017F07Rik|C130076O07Rik|mKIAA0343	neuronal cell adhesion molecule	protein-coding	5.5	8.0	0.0	2.5	7.0	1.5
Merged-chr7-45238995-4	chr7	45238512	45239512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007645)	promoter-TSS (NM_007645)	103.0	NM_001290802	12493.0	Mm.3689	NM_007645	ENSMUSG00000030798	Cd37	Tspan26	CD37 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89262527-4	chr6	89262052	89263052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23173.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150749002-4	chr2	150748481	150749481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172117)	promoter-TSS (NM_172117)	-100.0	NM_001355068	12497.0	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148311039-4	chr5	148310562	148311562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359511, intron 6 of 6)	MuRRS-int|LTR|ERV1	45845.0	NM_001359505	77521.0	Mm.244177	NM_029920	ENSMUSG00000029651	Mtus2	5730592G18Rik|A730013O20Rik|AU067634|C130038G02Rik|Cazip|Gm763|mKIAA0774	microtubule associated tumor suppressor candidate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121593264-2	chr5	121592764	121593764	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009656, intron 1 of 12)	CpG	560.0	NM_009656	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46830548-4	chr11	46830043	46831043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178759, intron 5 of 8)	MLTR14|LTR|ERV1	19744.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	37.5	81.0	93.5	54.0	123.5	134.0
Merged-chr2-174110512-10	chr2	174110017	174111017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_213733, exon 1 of 12)	exon (NM_213733, exon 1 of 12)	166.0	NM_213733	228961.0	Mm.295629	NM_213733	ENSMUSG00000039263	Npepl1	BC023239|C85514|mKIAA1974	aminopeptidase-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36286969-4	chr18	36286484	36287484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008989, intron 1 of 1)	intron (NM_008989, intron 1 of 1)	5822.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91820472-4	chr16	91820017	91821017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010587, exon 13 of 39)	exon (NM_010587, exon 13 of 39)	91146.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108831780-4	chr9	108831263	108832263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001359573, exon 2 of 36)	exon (NM_001359573, exon 2 of 36)	5718.0	NM_001359572	107934.0	Mm.39945	NM_080437	ENSMUSG00000023473	Celsr3	Adgrc3|Fmi1|flamingo|mKIAA0812	cadherin, EGF LAG seven-pass G-type receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50948261-4	chr9	50947764	50948764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178710, intron 3 of 15)	intron (NM_178710, intron 3 of 15)	60809.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56008472-4	chr17	56007959	56008959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026530)	promoter-TSS (NM_026530)	-323.0	NM_145934	106766.0	Mm.204991	NM_145934	ENSMUSG00000038781	Stap2	AW049765|STAP-2	signal transducing adaptor family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91335399-4	chr2	91334897	91335897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175123, intron 3 of 8)	intron (NM_175123, intron 3 of 8)	70282.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	11.0	31.5	20.0	17.5	17.5	22.0
Merged-chr6-113330805-4	chr6	113330354	113331354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010957, intron 3 of 6)	ORR1A4|LTR|ERVL-MaLR	3878.0	NM_010957	18294.0	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92052429-4	chr1	92051916	92052916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207225, intron 3 of 26)	intron (NM_207225, intron 3 of 26)	127925.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-74126684-4	chr5	74126197	74127197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33167.0	NR_031758	100313943.0	Mm.46547	NR_031758	ENSMUSG00000093355	Snora26	MBI-6	small nucleolar RNA, H/ACA box 26	snoRNA	2.5	0.5	1.0	1.5	3.5	7.0
Merged-chr7-139247289-1	chr7	139246789	139247789	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-1193.0	NM_001033206	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	66.5	114.5	114.0	83.0	137.0	93.5
Merged-chr8-20550553-1	chr8	20550053	20551053	+	1000.0	f0_c57.idr	Intergenic	CpG	-64374.0	NM_001270553	100861668.0	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31519565-1	chr17	31519065	31520065	+	1000.0	f1_balb.idr	promoter-TSS (NM_030087)	promoter-TSS (NM_030087)	-550.0	NM_030087	78330.0	Mm.28349	NM_030087	ENSMUSG00000024038	Ndufv3	1500032D16Rik	NADH dehydrogenase (ubiquinone) flavoprotein 3	protein-coding	8.5	22.5	10.0	15.5	10.5	16.5
Merged-chr11-83648432-4	chr11	83647938	83648938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011337, intron 2 of 2)	intron (NM_011337, intron 2 of 2)	940.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191718148-7	chr1	191717668	191718668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134829)	promoter-TSS (NM_001134829)	144.0	NM_172266	226856.0	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	0.0	11.0	4.5	0.0	11.0	3.5
Merged-chr5-99250485-2	chr5	99249990	99250990	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	2437.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-76241353-4	chr18	76240834	76241834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010754)	promoter-TSS (NM_010754)	-367.0	NM_010754	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	71.5	228.5	186.0	69.0	236.0	188.5
Merged-chr1-58734225-4	chr1	58733737	58734737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 4 of 8)	intron (NM_001355056, intron 4 of 8)	3685.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80848447-2	chr7	80847947	80848947	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-13661.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-16951273-4	chr11	16950787	16951787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110425)	promoter-TSS (NR_110425)	-5.0	NR_110423	72735.0	Mm.268598	NR_015469		Eldr	2810442I21Rik|4930500E12Rik|Fabl	Egfr long non-coding downstream RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80702622-4	chr10	80702115	80703115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027829)	promoter-TSS (NM_027829)	-78.0	NM_027829	71564.0	Mm.35802	NM_027829	ENSMUSG00000055862	Izumo4	9030607L17Rik|AI550407	IZUMO family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4145145-4	chr19	4144643	4145643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_206973, exon 2 of 2)	3' UTR (NM_206973, exon 2 of 2)	-3520.0	NM_011778	23789.0	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25440542-3	chr8	25439953	25440953	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78306.0	NM_001079909	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83141512-4	chr8	83141035	83142035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23817.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	116.5	138.0	163.0	105.5	246.5	145.0
Merged-chr10-60760625-4	chr10	60760140	60761140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7858.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134120288-2	chr1	134119788	134120788	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027979, intron 1 of 11)	intron (NM_027979, intron 1 of 11)	9046.0	NM_027979	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70549439-4	chr14	70548941	70549941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_180588)	TTS (NM_180588)	4190.0	NM_180588	72549.0	Mm.46742	NM_180588	ENSMUSG00000033589	Reep4	2700029E10Rik	receptor accessory protein 4	protein-coding	0.0	0.0	0.0	7.0	0.0	8.0
Merged-chr13-21750578-4	chr13	21750069	21751069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178211)	promoter-TSS (NM_178211)	-16.0	NM_178211	319160.0	Mm.255646	NM_178211	ENSMUSG00000064288	Hist1h4k	-	histone cluster 1, H4k	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122467854-4	chr2	122467352	122468352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027919)	promoter-TSS (NR_027919)	-55.0	NR_027919	81913.0	Mm.122640	NR_027919		Bambi-ps1	-	BMP and activin membrane-bound inhibitor, pseudogene (Xenopus laevis)	pseudo	3.0	5.5	1.0	12.5	13.0	14.0
Merged-chr1-77516394-4	chr1	77515897	77516897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1309.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	1.0	5.5	0.0	3.5	0.0	0.0
Merged-chr11-50359401-2	chr11	50358901	50359901	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1522.0	NR_030529	100049547.0		NR_030529	ENSMUSG00000076450	Mir804	Mirn804|mmu-mir-804	microRNA 804	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-14863913-4	chr14	14863425	14864425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195229, intron 19 of 34)	intron (NM_001195229, intron 19 of 34)	43110.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	7.0
Merged-chr6-47648994-2	chr6	47648494	47649494	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR18C_MM|LTR|ERVK	6100.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167586424-2	chr2	167585924	167586924	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45581.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40971426-2	chr4	40970929	40971929	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001290448, intron 1 of 15)	CpG	486.0	NM_023739	74164.0	Mm.247456	NM_023739	ENSMUSG00000028423	Nfx1	1300017N15Rik|3000003M19Rik|NFX.1|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44470043-2	chr11	44469553	44470553	+	1000.0	f0_c57.idr|f1_balb.idr	intron (NM_024475, intron 1 of 10)	intron (NM_024475, intron 1 of 10)	495.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	22.5	52.0	49.5	32.0	46.5	37.5
Merged-chr2-167503740-8	chr2	167503294	167504294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153838, intron 1 of 4)	CpG	351.0	NM_001360930	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-42505770-4	chr7	42505249	42506249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001309388)	promoter-TSS (NM_001309388)	4.0	NM_001309389	434178.0	Mm.333810	NM_001309388	ENSMUSG00000092416	Zfp141	-	zinc finger protein 141	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-63912173-4	chr7	63911695	63912695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-4662.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	41.5	166.5	74.0	56.0	150.0	61.5
Merged-chr5-123138353-4	chr5	123137839	123138839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3854.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	1.5	1.0	6.5	3.5	8.0	8.0
Merged-chr18-84675440-2	chr18	84674940	84675940	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023149, intron 5 of 11)	B3|SINE|B2	6619.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54577569-4	chr14	54577058	54578058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010590, exon 1 of 8)	5' UTR (NM_010590, exon 1 of 8)	103.0	NM_010590	16475.0	Mm.100253	NM_010590	ENSMUSG00000022178	Ajuba	Jub	ajuba LIM protein	protein-coding	11.0	24.5	19.0	1.0	8.5	20.0
Merged-chr5-123141449-6	chr5	123140932	123141932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040398)	promoter-TSS (NM_001040398)	-761.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	9.5	40.0	14.5	9.5	39.5	14.0
Merged-chr14-62761284-4	chr14	62760788	62761788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008715)	promoter-TSS (NM_008715)	-176.0	NM_008715	18130.0	Mm.319684	NM_008715	ENSMUSG00000035161	Ints6	2900075H24Rik|AI480962|DICE1|Ddx26|HDB|Notch2l	integrator complex subunit 6	protein-coding	7.5	2.5	3.0	2.0	0.0	4.0
Merged-chr7-90031735-2	chr7	90031235	90032235	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 1 of 5)	intron (NR_110365, intron 1 of 5)	2576.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	32.0	106.5	52.0	32.5	99.5	58.5
Merged-chr10-37236139-4	chr10	37235645	37236645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97219.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100499963-3	chr7	100499466	100500466	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011671)	TTS (NM_011671)	6608.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	2.5	16.0	6.0	2.5	19.0	6.5
Merged-chr6-117891626-4	chr6	117891117	117892117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8723.0	NM_001166432	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-101603408-2	chr3	101602908	101603908	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	1299.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129640937-7	chr4	129640423	129641423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005506)	promoter-TSS (NM_001005506)	-118.0	NM_001005506	109658.0	Mm.268863	NM_001005506	ENSMUSG00000053841	Txlna	2600010N21Rik|AI425952|AW209241|Il14|Txln	taxilin alpha	protein-coding	9.5	45.5	29.5	2.5	53.0	26.5
Merged-chr16-20301928-4	chr16	20301428	20302428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005767, intron 1 of 9)	intron (NM_001005767, intron 1 of 9)	434.0	NM_001005767	381038.0	Mm.371737	NM_001005767	ENSMUSG00000033918	Parl	D16Ertd607e|PRO2207|PSARL1|PSENIP2|Psarl	presenilin associated, rhomboid-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49193971-2	chr13	49193471	49194471	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013610, intron 2 of 3)	intron (NM_013610, intron 2 of 3)	6424.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8099262-4	chr15	8098751	8099751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081402)	promoter-TSS (NM_001081402)	-42.0	NM_001081402	545085.0	Mm.321312	NM_001081402	ENSMUSG00000039828	Wdr70	4833422F06Rik	WD repeat domain 70	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-37870856-2	chr16	37870356	37871356	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177093, intron 1 of 3)	B4A|SINE|B4	2456.0	NM_177093	320184.0	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85277816-1	chr1	85277316	85278316	+	1000.0	f1_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-7250.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-99520421-2	chr6	99519921	99520921	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347345, intron 1 of 19)	intron (NM_001347345, intron 1 of 19)	572.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79871005-1	chr11	79870505	79871505	+	1000.0	f0_c57.idr	Intergenic	Intergenic	91382.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8535051-4	chr11	8534571	8535571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 10 of 30)	intron (NM_001083587, intron 10 of 30)	129464.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	6.0	1.5	8.5	0.0	2.5	1.0
Merged-chr10-43996408-4	chr10	43995900	43996900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172393, intron 2 of 19)	intron (NM_172393, intron 2 of 19)	8446.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89172682-4	chr15	89172195	89173195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	1256.0	NM_001159521	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-55712647-4	chr17	55712156	55713156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028370)	promoter-TSS (NM_028370)	-20.0	NR_151542	72836.0	Mm.177073	NM_028370	ENSMUSG00000024174	Pot1b	2810458H16Rik	protection of telomeres 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-63278954-4	chr13	63278467	63279467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	18180.0	NR_045794	100504114.0	Mm.437070	NR_045794	ENSMUSG00000097242	Gm16907	-	predicted gene, 16907	ncRNA	18.0	9.5	6.0	1.5	7.0	4.5
Merged-chr4-137866383-4	chr4	137865875	137866875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	4138.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	6.5	10.0	4.0	0.0	21.5	13.0
Merged-chr4-129821453-4	chr4	129820958	129821958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	750.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	6.5	38.0	24.0	20.5	49.5	14.5
Merged-chr3-95111146-4	chr3	95110661	95111661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009336, exon 1 of 6)	exon (NM_009336, exon 1 of 6)	119.0	NM_009336	21427.0	Mm.133919	NM_009336	ENSMUSG00000008958	Vps72	Tcfl1|YL-1	vacuolar protein sorting 72	protein-coding	1.0	3.5	6.0	0.5	6.5	0.5
Merged-chr8-119824999-4	chr8	119824495	119825495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	15584.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29374283-4	chr11	29373809	29374809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_176841, exon 1 of 32)	5' UTR (NM_176841, exon 1 of 32)	137.0	NM_176841	108686.0	Mm.338284	NM_176841	ENSMUSG00000032740	Ccdc88a	A430106J12Rik|AI848406|Ape|C130096N06Rik|C330012F17Rik|D130005J21Rik|Girdin|Giv|Grdn|Hkrp1	coiled coil domain containing 88A	protein-coding	5.0	13.5	2.5	5.0	13.5	2.5
Merged-chr13-55202200-4	chr13	55201698	55202698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-7584.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	12.5	69.0	55.5	12.5	67.5	56.0
Merged-chr2-144337931-4	chr2	144337411	144338411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5831.0	NM_026924	107586.0	Mm.252750	NM_026924	ENSMUSG00000037279	Ovol2	1700108N11Rik|1810007D21Rik|M-OVO|M-OVO-A|M-OVO-B|MOVO|Ovo2|Zfp339|movo2	ovo like zinc finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70459052-2	chr11	70458552	70459552	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348337)	promoter-TSS (NM_001348337)	-381.0	NM_001348337	574428.0	Mm.425692	NM_001029929	ENSMUSG00000040829	Zmynd15	-	zinc finger, MYND-type containing 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142882106-4	chr3	142881654	142882654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178654)	promoter-TSS (NM_178654)	-150.0	NM_178654	109333.0	Mm.244236	NM_178654	ENSMUSG00000004591	Pkn2	6030436C20Rik|AI507382|PRK2|Prkcl2|Stk7	protein kinase N2	protein-coding	25.5	64.0	53.0	36.5	51.5	61.5
Merged-chr8-70001868-4	chr8	70001317	70002317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-5433.0	NM_145596	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	192.5	478.5	316.0	160.5	442.0	281.0
Merged-chr16-57455798-4	chr16	57455313	57456313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-93429.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-90462552-4	chr6	90462043	90463043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023184)	promoter-TSS (NM_023184)	-33.0	NM_001355668	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60115355-4	chr11	60114837	60115837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009021, intron 1 of 5)	CpG	10324.0	NM_009021	19377.0	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45274854-4	chr9	45274374	45275374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5725.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101293563-2	chr7	101293063	101294063	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152152, intron 9 of 16)	intron (NR_152152, intron 9 of 16)	8525.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112628528-2	chr12	112628028	112629028	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 2 of 12)	intron (NM_007421, intron 2 of 12)	8481.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123869484-4	chr9	123868989	123869989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7460.0	NM_011798	23832.0	Mm.390241	NM_011798	ENSMUSG00000060509	Xcr1	Ccxcr1|Gpr5|mXcr1	chemokine (C motif) receptor 1	protein-coding	0.0	0.0	0.0	2.5	5.5	1.0
Merged-chr15-38300013-2	chr15	38299495	38300495	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001357677)	promoter-TSS (NM_001357677)	-95.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119615641-2	chr13	119615141	119616141	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8178.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170573535-4	chr1	170573027	170574027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 1 of 9)	intron (NM_001109985, intron 1 of 9)	16322.0	NM_001109985	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62079721-4	chr11	62079217	62080217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029936, intron 1 of 12)	ERV3-16A3_LTR|LTR|ERVL	2693.0	NM_001029936	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80939360-4	chr12	80938903	80939903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	5996.0	NR_045057	100504661.0	Mm.442322	NR_045057	ENSMUSG00000112880	Gm20337	-	predicted gene, 20337	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127080234-2	chr10	127079734	127080734	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001301014, exon 1 of 18)	exon (NM_001301014, exon 1 of 18)	1327.0	NM_001033263	216439.0	Mm.336761	NM_001033263	ENSMUSG00000025422	Agap2	AGAP-2|Centg1|PIKE|cnt-g1|mKIAA0167	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77796269-4	chr18	77795757	77796757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152167, exon 1 of 3)	non-coding (NR_152167, exon 1 of 3)	133.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150061035-4	chr4	150060535	150061535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7419.0	NR_029751	723848.0		NR_029751	ENSMUSG00000065493	Mir34a	Mirn34a|mir-34a|mmu-mir-34a	microRNA 34a	ncRNA	15.0	7.0	19.5	82.0	133.5	83.5
Merged-chr19-6969802-4	chr19	6969319	6970319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008874)	promoter-TSS (NM_008874)	-5.0	NM_001290349	18797.0	Mm.273204	NM_008874	ENSMUSG00000024960	Plcb3	mKIAA4098	phospholipase C, beta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87672423-4	chr17	87671882	87672882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008628)	promoter-TSS (NM_008628)	-175.0	NM_008628	17685.0	Mm.4619	NM_008628	ENSMUSG00000024151	Msh2	AI788990	mutS homolog 2	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr2-25549639-4	chr2	25549142	25550142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2702.0	NM_009422	22030.0	Mm.3399	NM_009422	ENSMUSG00000026942	Traf2	AI325259	TNF receptor-associated factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20651940-4	chr9	20651424	20652424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023371)	promoter-TSS (NM_023371)	-206.0	NM_023371	23988.0	Mm.7906	NM_023371	ENSMUSG00000032171	Pin1	0610025L01Rik|D9Bwg1161e	protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101977534-4	chr15	101977029	101978029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-23242.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23874777-4	chr18	23874301	23875301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	70831.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73952382-4	chr17	73951810	73952810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2114.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8736896-2	chr10	8736396	8737396	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 16 of 19)	intron (NM_175155, intron 16 of 19)	149174.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	1.0	10.0	8.0	1.0	10.0	5.5
Merged-chr1-144200705-4	chr1	144200209	144201209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23337.0	NM_153171	246709.0	Mm.38271	NM_153171	ENSMUSG00000051079	Rgs13	-	regulator of G-protein signaling 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9669231-4	chr4	9668738	9669738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023066)	promoter-TSS (NM_023066)	-76.0	NM_001177849	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	4.5	16.5	13.0	11.0	21.5	3.5
Merged-chr16-11068054-2	chr16	11067554	11068554	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009223, intron 1 of 1)	intron (NM_009223, intron 1 of 1)	1756.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52981077-6	chr13	52980526	52981526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017373)	promoter-TSS (NM_017373)	13.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	3.5	0.0	1.5	0.0	2.0	0.0
Merged-chr2-31742336-4	chr2	31741830	31742830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283047, intron 2 of 11)	intron (NM_001283047, intron 2 of 11)	-17609.0	NM_009594	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-51918455-2	chr15	51917955	51918955	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41014.0	NM_030132	78581.0	Mm.176347	NM_030132	ENSMUSG00000022313	Utp23	1700010I21Rik|AI662478|BB238373|D530033C11Rik	UTP23 small subunit processome component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84175859-4	chr12	84175367	84176367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	18148.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-13423637-4	chr15	13423120	13424120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-249945.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121817624-2	chr5	121817124	121818124	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008507, exon 8 of 8)	3' UTR (NM_008507, exon 8 of 8)	1649.0	NR_105998	102465624.0		NR_105998	ENSMUSG00000099063	Mir7031	Gm27859|mmu-mir-7031	microRNA 7031	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129434391-4	chr6	129433882	129434882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175526, intron 3 of 5)	intron (NM_175526, intron 3 of 5)	17618.0	NM_001347475	243653.0	Mm.131289	NM_175526	ENSMUSG00000033082	Clec1a	5930406N14Rik	C-type lectin domain family 1, member a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41386071-4	chr10	41385558	41386558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	-64300.0	NM_001277229	268294.0	Mm.258475	NM_153398	ENSMUSG00000019826	Zbtb24	BC055367|Bif1|Bsg1|ZNF450	zinc finger and BTB domain containing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7221160-2	chr9	7220660	7221660	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36655.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88175968-2	chr3	88175468	88176468	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045997, intron 1 of 2)	intron (NR_045997, intron 1 of 2)	1817.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88652800-4	chr1	88652314	88653314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	49377.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126110756-4	chr4	126110314	126111314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 1 of 10)	intron (NM_028800, intron 1 of 10)	6857.0	NM_001145827	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	9.5	21.0	20.5	2.0	5.5	9.0
Merged-chr1-80609859-4	chr1	80609347	80610347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 4 of 55)	L1MA8|LINE|L1	55505.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27679916-4	chr2	27679408	27680408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	2707.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81414069-4	chr10	81413565	81414565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 2 of 8)	intron (NM_026756, intron 2 of 8)	2232.0	NR_106141	102465778.0		NR_106141	ENSMUSG00000105379	Mir1191b	mmu-mir-1191b	microRNA 1191b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-43265492-4	chr6	43264976	43265976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133674)	promoter-TSS (NM_133674)	-168.0	NM_133674	54324.0	Mm.320978	NM_133674	ENSMUSG00000033542	Arhgef5	2210412D05Rik|AA717842|AW495314|Tim1	Rho guanine nucleotide exchange factor (GEF) 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34869671-4	chr6	34869165	34870165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197986, intron 1 of 1)	intron (NM_197986, intron 1 of 1)	6519.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125569962-4	chr8	125569472	125570472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357372)	promoter-TSS (NM_001357372)	-109.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	24.0	122.5	70.5	33.0	75.0	40.5
Merged-chr18-84849906-4	chr18	84849417	84850417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1421.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3941145-4	chr7	3940645	3941645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25644.0	NR_028115	18726.0	Mm.440989	NM_011090	ENSMUSG00000030427	Lilra6	7M1|Pira3	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8787844-2	chr10	8787344	8788344	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 5 of 19)	intron (NM_175155, intron 5 of 19)	98226.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	2.0	2.0	4.0	0.0	4.0	5.5
Merged-chr10-95515672-3	chr10	95515175	95516175	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080560, intron 1 of 3)	CpG	513.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62199136-4	chr10	62198618	62199618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 3 of 7)	intron (NM_197996, intron 3 of 7)	-4891.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-140123329-2	chr7	140122829	140123829	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2328.0	NM_001346725	212503.0	Mm.486735	NM_153783	ENSMUSG00000025464	Paox	2410012F02Rik|AI118225|Pao	polyamine oxidase (exo-N4-amino)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-97773361-4	chr4	97772855	97773855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-4271.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-10080494-4	chr2	10079970	10080970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025280)	promoter-TSS (NM_025280)	40.0	NM_020615	11949.0	Mm.12677	NM_020615	ENSMUSG00000025781	Atp5c1	1700094F02Rik|Atp5f1c	ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-10109865-4	chr13	10109383	10110383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 3 of 4)	intron (NM_033269, intron 3 of 4)	250920.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61653220-4	chr11	61652719	61653719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027817)	promoter-TSS (NM_027817)	-102.0	NM_027817	71520.0	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81307757-4	chr7	81307228	81308228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 9 of 21)	intron (NM_008803, intron 9 of 21)	37506.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-48816444-4	chr11	48815914	48816914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145377, exon 1 of 6)	exon (NM_145377, exon 1 of 6)	977.0	NM_145377	211007.0	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67829630-2	chr5	67829130	67830130	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	17801.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-99104680-1	chr14	99104180	99105180	+	1000.0	f0_balb.idr	intron (NM_029320, intron 2 of 17)	intron (NM_029320, intron 2 of 17)	-4910.0	NR_153390	72662.0	Mm.163339	NM_028315	ENSMUSG00000033166	Dis3	2810028N01Rik	DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3169639-2	chr11	3169150	3170150	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 7 of 32)	MTC|LTR|ERVL-MaLR	23813.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53159903-4	chr4	53159421	53160421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013454)	promoter-TSS (NM_013454)	-26.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28523213-4	chr17	28522712	28523712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7649.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71469108-4	chr8	71468627	71469627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001294259)	promoter-TSS (NM_001294259)	-67.0	NM_001294259	66498.0	Mm.260360	NM_025600	ENSMUSG00000074247	Dda1	1500034J01Rik|1700095J19Rik|R74921	DET1 and DDB1 associated 1	protein-coding	7.5	14.5	11.5	2.0	17.5	5.5
Merged-chr5-101828996-2	chr5	101828496	101829496	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63866.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-46873636-2	chr1	46873136	46874136	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356417, intron 2 of 10)	intron (NM_001356417, intron 2 of 10)	-20018.0	NM_172653	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-41633030-4	chr7	41632518	41633518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360680)	promoter-TSS (NM_001360680)	-513.0	NM_001360675	67607.0	Mm.384626	NM_023363	ENSMUSG00000074165	Zfp788	2810426N06Rik|AI256342|AI605193	zinc finger protein 788	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-174040940-4	chr1	174040437	174041437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146717)	promoter-TSS (NM_146717)	-996.0	NM_146717	258712.0	Mm.223146	NM_146717	ENSMUSG00000045381	Olfr433	MOR123-1	olfactory receptor 433	protein-coding	99.0	298.5	218.0	91.5	270.5	204.0
Merged-chr7-64248412-3	chr7	64247906	64248906	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039104, intron 26 of 26)	intron (NM_001039104, intron 26 of 26)	1693.0	NR_105844	102465226.0		NR_105844	ENSMUSG00000098910	Mir6416	Gm27746|mmu-mir-6416	microRNA 6416	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7453059-2	chr19	7452559	7453559	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053076, intron 1 of 6)	B2_Mm1t|SINE|B2	30232.0	NM_001271486	20168.0	Mm.246990	NM_053076	ENSMUSG00000024758	Rtn3	RTN3-A1	reticulon 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81524443-4	chr10	81523877	81524877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010304)	promoter-TSS (NM_010304)	-152.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76669583-2	chr16	76669083	76670083	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	109509.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62189464-4	chr18	62188967	62189967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9367.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	86.0	219.0	158.0	80.5	175.0	135.0
Merged-chr4-59783941-4	chr4	59783457	59784457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013577)	promoter-TSS (NM_001013577)	-102.0	NM_001013577	66209.0	Mm.51988	NM_001013577	ENSMUSG00000038544	Inip	1110054O05Rik|2610312O17Rik|AA399876|Ssbip1	INTS3 and NABP interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-34747193-4	chr14	34746697	34747697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001301330, exon 19 of 19)	3' UTR (NM_001301330, exon 19 of 19)	-72939.0	NM_008166	14803.0	Mm.121569	NM_008166	ENSMUSG00000041078	Grid1	GluD1|GluRdelta1	glutamate receptor, ionotropic, delta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92279351-4	chr5	92278857	92279857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1176.0	NM_025972	67111.0	Mm.28890	NM_025972	ENSMUSG00000029413	Naaa	2210023K21Rik|3830414F09Rik|Asahl	N-acylethanolamine acid amidase	protein-coding	61.0	138.0	96.5	40.5	87.0	70.0
Merged-chr15-75981949-4	chr15	75981448	75982448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163518, exon 1 of 1)	exon (NM_001163518, exon 1 of 1)	337.0	NM_001163518	223648.0	Mm.17610	NM_146059	ENSMUSG00000098176	Ccdc166	2410075B13Rik	coiled-coil domain containing 166	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55714688-4	chr13	55714168	55715168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175150)	promoter-TSS (NM_175150)	18.0	NM_175150	69672.0	Mm.294457	NM_175150	ENSMUSG00000021497	Txndc15	2310047H23Rik|AI854086|C5orf14|UNQ335	thioredoxin domain containing 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53332169-4	chr19	53331671	53332671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008543, intron 2 of 5)	intron (NM_001008543, intron 2 of 5)	1763.0	NM_001008543	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127270712-4	chr2	127270228	127271228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_139308, exon 1 of 8)	exon (NM_139308, exon 1 of 8)	499.0	NM_139308	99138.0	Mm.41271	NM_139308	ENSMUSG00000027367	Stard7	AI852671|AL022671|AW544915	START domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30666723-4	chr5	30666228	30667228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302130)	promoter-TSS (NM_001302130)	-158.0	NM_007681	12615.0	Mm.290563	NM_007681	ENSMUSG00000029177	Cenpa	Cenp-A	centromere protein A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31021044-4	chr17	31020534	31021534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36660.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	15.0	15.0	11.5	16.0	22.5	21.0
Merged-chr17-56266525-4	chr17	56266035	56267035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9742.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-33170306-4	chr12	33169796	33170796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028139, intron 2 of 3)	L1MB7|LINE|L1	22610.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	23.0	25.5	12.5	17.0	9.5	0.0
Merged-chr5-137533641-4	chr5	137533159	137534159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010312)	promoter-TSS (NM_010312)	-353.0	NM_010312	14693.0	Mm.30141	NM_010312	ENSMUSG00000029713	Gnb2	Gnb-2	guanine nucleotide binding protein (G protein), beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84647857-4	chr17	84647354	84648354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172256, intron 10 of 12)	intron (NM_172256, intron 10 of 12)	21355.0	NM_172256	213575.0	Mm.246119	NM_172256	ENSMUSG00000024253	Dync2li1	4933404O11Rik|CGI-60|D2lic|LIC3|mD2LIC	dynein cytoplasmic 2 light intermediate chain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-159587293-4	chr2	159586793	159587793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-360048.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	7.5	1.0	4.5	7.0	12.5	10.5
Merged-chr18-30584053-4	chr18	30583547	30584547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	311182.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	12.5	3.5	8.0	17.5	12.5	2.5
Merged-chr5-72269709-4	chr5	72269190	72270190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 15 of 22)	intron (NR_003966, intron 15 of 22)	66347.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-82793828-4	chr3	82793324	82794324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	7SK|RNA|RNA	82659.0	NM_001277170	633285.0	Mm.265114	NM_001146328	ENSMUSG00000033882	Rbm46	EG633285|Gm761	RNA binding motif protein 46	protein-coding	9.0	27.0	38.5	17.5	16.5	18.0
Merged-chr12-25216964-4	chr12	25216485	25217485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER63A|DNA|hAT-Blackjack	87811.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-108041615-4	chr13	108041098	108042098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2876.0	NM_001048250	75616.0	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	16.5	14.0	10.5	6.5	17.5	15.0
Merged-chr15-101257067-4	chr15	101256588	101257588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9758.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	22.5	100.5	58.5	18.5	46.5	34.0
Merged-chr10-59294696-2	chr10	59294196	59295196	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28600.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24654157-4	chr17	24653636	24654636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3831.0	NM_023055	65962.0	Mm.21587	NM_023055	ENSMUSG00000002504	Slc9a3r2	0610011L07Rik|1200011K07Rik|2010007A20Rik|E3karp|NHERF-2|Nherf2|Octs2|Sip-1|Sip1|Sryip1|Tka-1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	protein-coding	3.0	10.5	19.0	13.0	17.0	8.5
Merged-chr16-38088924-4	chr16	38088462	38089462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019827)	promoter-TSS (NM_019827)	-39.0	NM_001347232	56637.0	Mm.394930	NM_019827	ENSMUSG00000022812	Gsk3b	7330414F15Rik|8430431H08Rik|C86142|GSK-3|GSK-3beta|GSK3	glycogen synthase kinase 3 beta	protein-coding	53.5	111.0	88.0	70.0	118.5	102.5
Merged-chr9-20459922-4	chr9	20459388	20460388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011753, intron 1 of 9)	CpG	272.0	NM_011753	22688.0	Mm.107441	NM_011753	ENSMUSG00000063108	Zfp26	5033428C05Rik|KRAB15|Zfp-26|Zfp70|Zfp81-rs1|mKIAA4196|mkr-3|mszf14|mszf52	zinc finger protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113546588-2	chr13	113546088	113547088	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-43744.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125231761-4	chr6	125231257	125232257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001286753)	TTS (NM_001286753)	103.0	NM_145391	213233.0	Mm.296902	NM_145391	ENSMUSG00000038213	Tapbpl	BC017613|TAPBPL-R|Tapbplr	TAP binding protein-like	protein-coding	15.0	18.5	15.0	7.5	2.5	12.0
Merged-chr3-8993665-6	chr3	8993161	8994161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	10543.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	26.5	31.0	25.0	15.5	26.0	44.0
Merged-chr2-164938911-4	chr2	164938417	164939417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9302.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91956114-4	chr2	91955616	91956616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138306, intron 1 of 30)	intron (NM_138306, intron 1 of 30)	-5768.0	NM_001166597	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0.0	3.5	1.0	9.0	13.0	2.5
Merged-chr11-74649351-4	chr11	74648854	74649854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081158)	promoter-TSS (NM_001081158)	-141.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	10.0	31.0	30.0	35.0	22.0	23.5
Merged-chr16-92698778-4	chr16	92698274	92699274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	CpG	-1445.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	1.0	10.0	0.0	2.0	9.0
Merged-chr17-45433096-1	chr17	45432596	45433596	+	1000.0	f1_balb.idr	promoter-TSS (NR_130960)	promoter-TSS (NR_130960)	611.0	NM_152810	71702.0	Mm.28270	NM_152810	ENSMUSG00000023932	Cdc5l	1200002I02Rik|AA408004|PCDC5RP	cell division cycle 5-like (S. pombe)	protein-coding	19.5	39.0	50.5	22.0	88.0	47.0
Merged-chr15-58458066-2	chr15	58457566	58458566	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145959)	TTS (NM_145959)	42598.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143685874-4	chr7	143685373	143686373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024290)	promoter-TSS (NM_024290)	2.0	NM_001308111	79201.0	Mm.290780	NM_024290	ENSMUSG00000037613	Tnfrsf23	SOB|TNFRSFH23|Tnfrh1|Tnfrsf1al1|mDcTRAILR1|mSOB	tumor necrosis factor receptor superfamily, member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134247509-4	chr6	134247003	134248003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 5 of 8)	intron (NM_001303102, intron 5 of 8)	-148826.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	36.0	79.0	43.0	22.5	74.5	33.0
Merged-chr8-119446095-2	chr8	119445595	119446595	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054095)	promoter-TSS (NM_054095)	-624.0	NM_054095	117148.0	Mm.356184	NM_054095	ENSMUSG00000031837	Necab2	Efcbp2	N-terminal EF-hand calcium binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102739024-4	chr2	102738527	102739527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077514, intron 3 of 10)	intron (NM_001077514, intron 3 of 10)	7733.0	NR_153852	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27758544-4	chr2	27758072	27759072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 9 of 9)	intron (NM_001290481, intron 9 of 9)	47989.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-109796389-4	chr5	109795884	109796884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37758.0	NR_027964	667213.0	Mm.454429	NR_027964	ENSMUSG00000105044	Gm10416	EG667213	zinc finger protein pseudogene	pseudo	14.5	11.5	9.5	13.5	21.0	4.0
Merged-chr8-72169402-4	chr8	72168883	72169883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023126, intron 2 of 7)	PB1D10|SINE|Alu	8183.0	NM_023126	17274.0	Mm.162811	NM_023126	ENSMUSG00000003037	Rab8a	AA409338|Mel	RAB8A, member RAS oncogene family	protein-coding	68.0	175.0	128.0	39.5	173.0	109.0
Merged-chr15-58019775-4	chr15	58019282	58020282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14512.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124021914-4	chr5	124021423	124022423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	RSINE1|SINE|B4	10337.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	73.5	148.0	134.5	83.5	193.0	116.0
Merged-chr1-166345775-4	chr1	166345259	166346259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33408.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74925869-4	chr11	74925381	74926381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013761)	promoter-TSS (NM_013761)	9.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34108507-4	chr8	34107994	34108994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293758)	promoter-TSS (NM_001293758)	218.0	NM_001293759	22428.0	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	43.5	109.5	86.0	47.0	125.5	87.5
Merged-chr7-81196828-4	chr7	81196317	81197317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16987.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102278991-2	chr15	102278491	102279491	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134100)	promoter-TSS (NM_134100)	-465.0	NM_134100	106073.0	Mm.287740	NM_134100	ENSMUSG00000045665	Mfsd5	AA409375|AW556797|D15Mgi27	major facilitator superfamily domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132982884-2	chr7	132982384	132983384	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001362198, exon 10 of 11)	exon (NM_001362198, exon 10 of 11)	32363.0	NM_001170744	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	2.0	0.0	0.0	1.0	3.0	7.0
Merged-chr4-33289597-4	chr4	33289085	33290085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20726.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34907351-4	chr6	34906868	34907868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013366, intron 3 of 14)	intron (NM_001013366, intron 3 of 14)	3463.0	NM_001013366	101240.0	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44726057-4	chr16	44725532	44726532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145972, intron 1 of 8)	intron (NM_145972, intron 1 of 8)	1731.0	NM_145972	212547.0	Mm.310573	NM_145972	ENSMUSG00000036208	Nepro	-	nucleolus and neural progenitor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99017719-2	chr15	99017219	99018219	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12172.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36725623-4	chr18	36725109	36726109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009841, exon 2 of 2)	exon (NM_009841, exon 2 of 2)	1206.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	45.0	93.5	44.5	46.0	94.5	69.5
Merged-chr1-184732724-4	chr1	184732210	184733210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008250)	promoter-TSS (NM_008250)	-217.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6402179-4	chr19	6401699	6402699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011242, intron 2 of 16)	intron (NM_011242, intron 2 of 16)	1616.0	NM_011242	19395.0	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67098636-4	chr10	67098136	67099136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1648.0	NM_178606	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58009837-4	chr11	58009357	58010357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028451, intron 1 of 18)	CpG	793.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	52.0	132.5	74.0	32.5	119.5	73.5
Merged-chr9-114731154-4	chr9	114730680	114731680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026036)	promoter-TSS (NM_026036)	-23.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	2.0	0.0	6.0	4.0	6.0	3.5
Merged-chr2-27476103-3	chr2	27475604	27476604	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113574)	promoter-TSS (NM_001113574)	-431.0	NM_001113574	67382.0	Mm.28721	NM_023336	ENSMUSG00000026918	Brd3	2410084F24Rik|AW060456|Fsrg2|ORFX|RINGL3	bromodomain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165621916-4	chr1	165621426	165622426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	12615.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8842440-4	chr4	8841903	8842903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 18 of 36)	L1M5|LINE|L1	91079.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-28512834-2	chr13	28512334	28513334	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045053, intron 7 of 8)	intron (NR_045053, intron 7 of 8)	198039.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79767609-4	chr10	79767086	79768086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027505)	promoter-TSS (NR_027505)	-634.0	NR_027505	70294.0	Mm.466670	NM_144528	ENSMUSG00000035890	Rnf126	2610010O19Rik	ring finger protein 126	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94976384-4	chr13	94975909	94976909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172590)	promoter-TSS (NM_172590)	65.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59236652-4	chr10	59236125	59237125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14703.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-167266620-4	chr1	167266113	167267113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030724, intron 1 of 6)	MER21B|LTR|ERVL	18514.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94876383-4	chr8	94875885	94876885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053246)	promoter-TSS (NM_053246)	-73.0	NM_053246	114255.0	Mm.203949	NM_053246	ENSMUSG00000040631	Dok4	-	docking protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22446091-4	chr16	22445615	22446615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6545.0	NM_023794	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55899007-2	chr19	55898507	55899507	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142924, intron 1 of 11)	intron (NM_001142924, intron 1 of 11)	3686.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94967384-4	chr10	94966896	94967896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22818.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116131879-2	chr11	116131379	116132379	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178802)	promoter-TSS (NM_178802)	-751.0	NM_178802	338364.0	Mm.439976	NM_178802	ENSMUSG00000054517	Trim65	4732463G12Rik	tripartite motif-containing 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-126625687-4	chr3	126625196	126626196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	28745.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	141.0	378.0	271.0	200.0	318.0	296.5
Merged-chr6-29536961-4	chr6	29536478	29537478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_012057, exon 9 of 9)	3' UTR (NM_012057, exon 9 of 9)	7696.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21897606-4	chr19	21897134	21898134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	119294.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	28.5	41.5	24.0	32.0	44.0	25.5
Merged-chr16-32608926-4	chr16	32608438	32609438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011638)	promoter-TSS (NM_011638)	42.0	NM_011638	22042.0	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-3732819-4	chr16	3732314	3733314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11285.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38377000-4	chr16	38376501	38377501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081984, intron 3 of 3)	MTC|LTR|ERVL-MaLR	14811.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142493677-4	chr3	142493158	142494158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3276.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4121570-4	chr19	4121078	4122078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276284)	promoter-TSS (NM_001276284)	-3.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132852578-4	chr7	132852064	132853064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347629)	promoter-TSS (NM_001347629)	83.0	NM_028095	72096.0	Mm.28631	NM_028095	ENSMUSG00000030960	Eef1akmt2	2010208K18Rik|Mettl10	EEF1A lysine methyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-5298614-4	chr9	5298127	5299127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009807, exon 1 of 10)	5' UTR (NM_009807, exon 1 of 10)	110.0	NM_009807	12362.0	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88432617-4	chr4	88432101	88433101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025760, intron 3 of 6)	intron (NM_025760, intron 3 of 6)	6325.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	9.5	44.0	28.0	19.5	53.5	35.0
Merged-chr16-22358987-4	chr16	22358500	22359500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64012.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47276215-4	chr14	47275710	47276710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080843)	promoter-TSS (NM_080843)	647.0	NM_001360532	218973.0	Mm.265615	NM_172598	ENSMUSG00000037572	Wdhd1	A630092E18|AND-1|D630024B06Rik	WD repeat and HMG-box DNA binding protein 1	protein-coding	1.0	7.0	3.0	11.5	14.0	6.5
Merged-chr5-103614354-7	chr5	103613835	103614835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029415, intron 3 of 5)	intron (NM_029415, intron 3 of 5)	15068.0	NM_029415	75750.0	Mm.7446	NM_029415	ENSMUSG00000029321	Slc10a6	8430417G17Rik|C78479|Soat	solute carrier family 10 (sodium/bile acid cotransporter family), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13551215-4	chr8	13550701	13551701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025601, intron 8 of 8)	intron (NM_025601, intron 8 of 8)	11260.0	NM_025601	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3880602-4	chr19	3880098	3881098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271496, intron 3 of 11)	intron (NM_001271496, intron 3 of 11)	24632.0	NM_016921	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70829369-4	chr17	70828887	70829887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17390.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134730146-4	chr4	134729664	134730664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	-25874.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32197898-4	chr5	32197405	32198405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34803.0	NM_030072	665270.0	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80249163-4	chr10	80248717	80249717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029272)	promoter-TSS (NM_029272)	-235.0	NM_029272	75406.0	Mm.28712	NM_029272	ENSMUSG00000020153	Ndufs7	1010001M04Rik	NADH dehydrogenase (ubiquinone) Fe-S protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-40523003-4	chr3	40522461	40523461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040445)	promoter-TSS (NR_040445)	-49.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45277436-4	chr7	45276947	45277947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5426.0	NM_001033176	76713.0	Mm.425445	NM_001033176	ENSMUSG00000070568	Slc6a21	1700039E15Rik|Gm19188	solute carrier family 6 member 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115237953-4	chr5	115237443	115238443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026398, exon 2 of 6)	5' UTR (NM_026398, exon 2 of 6)	2092.0	NM_026398	117109.0	Mm.24636	NM_026398	ENSMUSG00000060152	Pop5	1500019J17Rik|2700077E03Rik|AW049989|Rnasep3	processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)	protein-coding	16.5	31.0	15.0	12.5	21.5	22.0
Merged-chr17-47629507-4	chr17	47628993	47629993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1197.0	NM_198421	224836.0	Mm.59393	NM_198421	ENSMUSG00000090115	Usp49	C330046L10Rik|Gm545	ubiquitin specific peptidase 49	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-106721707-4	chr3	106721216	106722216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039488)	promoter-TSS (NM_001039488)	34.0	NM_001286685	321000.0	Mm.259638	NM_028081	ENSMUSG00000056260	Lrif1	2010012G17Rik|4933421E11Rik|AI450568	ligand dependent nuclear receptor interacting factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-83714958-4	chr2	83714472	83715472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9425.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	3.0	6.5	6.5	3.5	7.0	2.5
Merged-chr19-4302420-4	chr19	4301908	4302908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	3814.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-15189447-3	chr10	15188947	15189947	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	429158.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51817952-4	chr11	51817474	51818474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357588, intron 12 of 12)	intron (NM_001357588, intron 12 of 12)	39507.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-135161489-4	chr6	135160981	135161981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013546, intron 1 of 3)	MIR3|SINE|MIR	6734.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	31.5	57.5	45.5	5.5	18.0	16.5
Merged-chr14-60269346-4	chr14	60268896	60269896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144843, intron 1 of 13)	intron (NM_144843, intron 1 of 13)	4191.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	43.0	101.5	75.5	32.0	69.5	67.5
Merged-chr11-32532844-3	chr11	32532347	32533347	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359177)	promoter-TSS (NM_001359177)	-419.0	NM_001359178	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106640420-2	chr11	106639896	106640896	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27466.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0.0	1.0	0.0	0.5	0.0	0.0
Merged-chr7-133047466-4	chr7	133046982	133047982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	-32235.0	NM_001170744	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115513899-4	chr5	115513367	115514367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	7191.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	219.5	563.0	358.5	378.0	879.0	719.0
Merged-chr7-44869929-4	chr7	44869447	44870447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133949)	promoter-TSS (NM_133949)	-159.0	NM_133949	84113.0	Mm.42855	NM_133949	ENSMUSG00000038502	Ptov1	1110030G05Rik|AU041779|Gcap3	prostate tumor over expressed gene 1	protein-coding	16.5	41.5	13.0	17.5	41.5	13.0
Merged-chr11-17953891-4	chr11	17953392	17954392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131916)	promoter-TSS (NR_131916)	-17.0	NM_026576	68145.0	Mm.178684	NM_026576	ENSMUSG00000016984	Etaa1	5730466H23Rik|AA672646	Ewing tumor-associated antigen 1	protein-coding	34.0	64.5	69.0	23.5	24.0	37.0
Merged-chr2-158145607-4	chr2	158145099	158146099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 1 of 12)	intron (NM_009373, intron 1 of 12)	793.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50381783-4	chr6	50381262	50382262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163645, intron 2 of 21)	MER5B|DNA|hAT-Charlie	1075.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105225801-4	chr4	105225305	105226305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 5 of 5)	L2c|LINE|L2	68458.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	23.5	19.0	10.5	13.5	14.5	17.5
Merged-chr9-55511818-2	chr9	55511331	55512331	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_145615, intron 1 of 11)	CpG	412.0	NM_145615	110842.0	Mm.290853	NM_145615	ENSMUSG00000032314	Etfa	2010200I21Rik|D9Ertd394e	electron transferring flavoprotein, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43789200-4	chr13	43788706	43789706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	4094.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92675897-2	chr5	92675397	92676397	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177230)	promoter-TSS (NM_177230)	-626.0	NM_001360019	320696.0	Mm.209991	NM_177230	ENSMUSG00000050050	Ccdc158	4932413O14Rik	coiled-coil domain containing 158	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97738155-4	chr7	97737682	97738682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175105)	promoter-TSS (NM_175105)	65.0	NM_175105	66333.0	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-125321661-4	chr10	125321170	125322170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 1 of 5)	intron (NM_001358496, intron 1 of 5)	7293.0	NM_011391	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94313446-4	chr16	94312938	94313938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139145, intron 1 of 10)	CpG	125.0	NM_139145	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-30772378-4	chr11	30771882	30772882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134013, intron 1 of 46)	CpG	607.0	NM_134013	103554.0	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	105.5	233.0	210.0	71.0	229.0	178.5
Merged-chr4-155066152-4	chr4	155065659	155066659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042407)	promoter-TSS (NM_001042407)	-871.0	NM_001042407	668173.0	Mm.133114	NM_001042407	ENSMUSG00000029047	Pex10	AV128229|Gm142	peroxisomal biogenesis factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-43890883-2	chr16	43890383	43891383	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027801, intron 1 of 15)	intron (NM_027801, intron 1 of 15)	981.0	NM_027801	212153.0	Mm.209835	NM_027801	ENSMUSG00000022701	Ccdc191	2610015P09Rik|8430422M09Rik|AU040712	coiled-coil domain containing 191	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78481100-4	chr10	78480613	78481613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16165.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	6.0	25.5	8.0	5.0	33.5	13.0
Merged-chr2-173020052-4	chr2	173019570	173020570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1832.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	8.5	10.5	5.0	9.0	3.0	4.5
Merged-chr11-3186806-4	chr11	3186324	3187324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 3 of 32)	intron (NM_030207, intron 3 of 32)	6639.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69766145-9	chr11	69765655	69766655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029348, intron 1 of 3)	CpG	243.0	NM_029348	75580.0	Mm.426361	NM_029348	ENSMUSG00000018750	Zbtb4	2310026P19Rik|9230111I22Rik|mKIAA1538	zinc finger and BTB domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71882010-4	chr8	71881487	71882487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145624)	promoter-TSS (NM_145624)	-81.0	NM_145624	236193.0	Mm.290790	NM_145624	ENSMUSG00000056019	Zfp709	BC021921|GIOT-4|HIT-40	zinc finger protein 709	protein-coding	89.5	134.5	134.0	52.0	91.0	73.0
Merged-chr15-27681597-4	chr15	27681101	27682101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001242423)	promoter-TSS (NM_001242423)	-59.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87282848-4	chr17	87282422	87283422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015506)	promoter-TSS (NR_015506)	36.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-38863609-4	chr12	38863100	38864100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347379, intron 11 of 11)	intron (NM_001347379, intron 11 of 11)	79889.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	3.0	0.0	8.0	0.5	0.0	4.5
Merged-chr4-155217583-4	chr4	155217078	155218078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	4957.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	3.0	18.0	18.5	2.0	19.5	16.5
Merged-chr19-43753212-8	chr19	43752707	43753707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144874)	promoter-TSS (NM_144874)	184.0	NM_025530	66388.0	Mm.20257	NM_025530	ENSMUSG00000025193	Cutc	2310039I18Rik|AI326282|CGI-32	cutC copper transporter	protein-coding	53.5	100.0	92.0	34.5	71.0	79.5
Merged-chr9-47744048-4	chr9	47743615	47744615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	74093.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	90.0	207.5	191.0	219.5	443.5	284.0
Merged-chr13-23465540-2	chr13	23465040	23466040	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013483, intron 1 of 7)	intron (NM_013483, intron 1 of 7)	361.0	NM_013483	12231.0	Mm.1420	NM_013483	ENSMUSG00000000706	Btn1a1	Btn	butyrophilin, subfamily 1, member A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70812651-6	chr11	70812162	70813162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045526)	promoter-TSS (NM_001045526)	-101.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	25.0	103.0	81.0	44.5	117.0	83.0
Merged-chr17-47214287-4	chr17	47213779	47214779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 3 of 19)	MIR3|SINE|MIR	-15951.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128685704-4	chr8	128685295	128686295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010578, exon 1 of 16)	5' UTR (NM_010578, exon 1 of 16)	141.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27709426-4	chr15	27708957	27709957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27915.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33779496-4	chr17	33778973	33779973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020581, intron 3 of 6)	intron (NM_020581, intron 3 of 6)	2102.0	NM_020581	57875.0	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	47.5	52.0	45.5	35.0	65.5	55.5
Merged-chr2-18056977-4	chr2	18056481	18057481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106115)	promoter-TSS (NR_106115)	-865.0	NR_106115	102466840.0		NR_106115	ENSMUSG00000099050	Mir7655	Gm27794|mmu-mir-7655	microRNA 7655	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70967832-4	chr17	70967330	70968330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22686.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-21336391-3	chr12	21335883	21336883	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291871, intron 11 of 18)	intron (NM_001291871, intron 11 of 18)	19991.0	NM_026347	67732.0	Mm.335830	NM_026347	ENSMUSG00000062054	Iah1	1500019E20Rik|4833421E05Rik	isoamyl acetate-hydrolyzing esterase 1 homolog	protein-coding	41.5	94.5	70.0	85.5	185.5	160.0
Merged-chr7-12881112-4	chr7	12880602	12881602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153802)	promoter-TSS (NM_153802)	-76.0	NM_153802	243833.0	Mm.293823	NM_153802	ENSMUSG00000060397	Zfp128	9630016P15Rik|Znf8|mZnf8	zinc finger protein 128	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-93334710-4	chr4	93334223	93335223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026954, exon 1 of 1)	3' UTR (NM_026954, exon 1 of 1)	788.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	45.0	90.0	69.0	32.5	137.0	64.5
Merged-chr2-91526725-4	chr2	91526229	91527229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165989)	promoter-TSS (NM_001165989)	-33.0	NM_001165989	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29156182-4	chr7	29155693	29156693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146023)	promoter-TSS (NM_001146023)	17.0	NM_001146023	73833.0	Mm.260890	NM_028661	ENSMUSG00000030590	Fam98c	1110006G06Rik|AI836081|AV026483|B230110F21Rik	family with sequence similarity 98, member C	protein-coding	30.5	76.5	69.0	65.5	97.5	78.0
Merged-chr6-120466736-4	chr6	120466219	120467219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 1 of 12)	intron (NM_008359, intron 1 of 12)	3522.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150904717-4	chr2	150904217	150905217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024465)	promoter-TSS (NM_024465)	14.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-104590321-4	chr2	104589832	104590832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177253)	promoter-TSS (NM_177253)	-152.0	NM_177253	228410.0	Mm.259876	NM_145529	ENSMUSG00000027176	Cstf3	4732468G05Rik|C79532|CstF-77	cleavage stimulation factor, 3' pre-RNA, subunit 3	protein-coding	0.0	13.0	5.5	6.0	13.0	6.5
Merged-chr11-50377110-3	chr11	50376612	50377612	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021510)	promoter-TSS (NM_021510)	-607.0	NM_021510	59013.0	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127594694-4	chr10	127594203	127595203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 8 of 88)	MIRc|SINE|MIR	26445.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	43.5	122.0	82.0	29.5	60.0	60.0
Merged-chr11-3179733-4	chr11	3179262	3180262	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 4 of 32)	intron (NM_030207, intron 4 of 32)	13701.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-66854187-2	chr10	66853687	66854687	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66197.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-26864270-4	chr18	26863773	26864773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-1110116.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-54953706-2	chr15	54953206	54954206	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_155354, exon 2 of 3)	non-coding (NR_155354, exon 2 of 3)	758.0	NR_155354	102638507.0	Mm.364574	NR_155354		Gm26684	-	predicted gene, 26684	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-25663315-4	chr5	25662815	25663815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42482.0	NM_020570	57434.0	Mm.143767	NM_020570	ENSMUSG00000028933	Xrcc2	4921524O04Rik|8030409M04Rik|RAD51|RecA	X-ray repair complementing defective repair in Chinese hamster cells 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59726018-4	chr15	59725514	59726514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68945.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87664078-4	chr16	87663574	87664574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34880.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	23.5	92.5	75.5	57.0	122.5	53.5
Merged-chr3-83841686-4	chr3	83841192	83842192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011905)	promoter-TSS (NM_011905)	-84.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	7.0	31.5	14.0	11.0	11.0	11.5
Merged-chr15-100619162-2	chr15	100618662	100619662	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011873, intron 3 of 3)	B1F1|SINE|Alu	3500.0	NM_011873	23994.0	Mm.486175	NM_011873	ENSMUSG00000000346	Dazap2	AI314727|Brbp|Gcap28|Prtb|gt6-12|mKIAA0058	DAZ associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-42471398-4	chr9	42470896	42471896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173038, intron 1 of 7)	intron (NM_173038, intron 1 of 7)	862.0	NM_173038	272589.0	Mm.34483	NM_173038	ENSMUSG00000037287	Tbcel	D330014K23|E130107N23Rik|Lrrc35	tubulin folding cofactor E-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-122351686-4	chr9	122351206	122352206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026179)	promoter-TSS (NM_026179)	90.0	NM_026179	67469.0	Mm.280254	NM_026179	ENSMUSG00000032540	Abhd5	1300003D03Rik|2010002J10Rik|CDS|CGI-58|IECN5|NCIE2	abhydrolase domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131910404-4	chr1	131909908	131910908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175294)	promoter-TSS (NM_175294)	-50.0	NM_001145804	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-66459494-2	chr18	66458994	66459994	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021451, intron 1 of 2)	intron (NM_021451, intron 1 of 2)	890.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34002297-4	chr13	34001812	34002812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009068)	promoter-TSS (NM_009068)	-51.0	NM_001359997	19766.0	Mm.374799	NM_009068	ENSMUSG00000021408	Ripk1	D330015H01Rik|RIP|RIP-1|Rinp|Rip1	receptor (TNFRSF)-interacting serine-threonine kinase 1	protein-coding	12.0	28.0	17.5	4.5	14.0	3.5
Merged-chr7-101380382-2	chr7	101379882	101380882	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040112, intron 1 of 30)	B3|SINE|B2	2260.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	8.5	10.0	13.0	10.5	9.0	22.0
Merged-chr5-32458949-4	chr5	32458444	32459444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172707)	promoter-TSS (NM_172707)	-26.0	NM_172707	19046.0	Mm.241931	NM_172707	ENSMUSG00000014956	Ppp1cb	1200010B19	protein phosphatase 1, catalytic subunit, beta isoform	protein-coding	111.5	274.0	187.0	113.5	251.5	174.0
Merged-chr9-7838256-4	chr9	7837770	7838770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1213.0	NM_007465	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144933857-2	chr3	144933357	144934357	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1328.0	NM_001033199	99709.0	Mm.440040	NM_001033199	ENSMUSG00000074195	Clca4b	AI747448|Clca7	chloride channel accessory 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115516261-4	chr5	115515768	115516768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	9592.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	285.0	643.0	432.0	201.0	539.0	346.0
Merged-chr8-117252864-4	chr8	117252350	117253350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4169.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102748821-4	chr14	102748319	102749319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	233813.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84350379-4	chr15	84349807	84350807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24188.0	NM_001162500	64099.0	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-9335436-4	chr11	9334951	9335951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 27 of 61)	intron (NM_178259, intron 27 of 61)	143509.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	32.5	83.5	60.0	39.0	69.0	59.5
Merged-chr15-79075132-4	chr15	79074660	79075660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145139)	promoter-TSS (NM_145139)	-63.0	NM_145139	223691.0	Mm.206404	NM_145139	ENSMUSG00000033047	Eif3l	0610011H21Rik|D15N1e|Eif3eip|Eif3ip|Eif3s6ip|HSP-66Y|PAF67	eukaryotic translation initiation factor 3, subunit L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76373771-4	chr16	76373270	76374270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173440)	promoter-TSS (NM_173440)	57.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34442252-4	chr19	34441732	34442732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32903.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85750905-2	chr1	85750405	85751405	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1043.0	NR_106172	102466882.0		NR_106172	ENSMUSG00000098634	Mir8096	Gm27479|mmu-mir-8096	microRNA 8096	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127841639-4	chr7	127841153	127842153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009294)	promoter-TSS (NM_009294)	-155.0	NM_009294	20909.0	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99920475-2	chr7	99919975	99920975	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175388, exon 6 of 6)	3' UTR (NM_175388, exon 6 of 6)	59983.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr4-133217762-2	chr4	133217262	133218262	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3047.0	NM_027152	69655.0	Mm.285685	NM_027152	ENSMUSG00000028865	Cd164l2	2310047N01Rik	CD164 sialomucin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr7-123123981-4	chr7	123123458	123124458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144925)	promoter-TSS (NM_144925)	73.0	NM_144925	233833.0	Mm.102305	NM_144925	ENSMUSG00000052707	Tnrc6a	2010321I05Rik|3110054G10Rik|AW557223|CAGH26|D130023A07Rik|GW182|Tnrc6	trinucleotide repeat containing 6a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-110727041-2	chr8	110726541	110727541	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198625, intron 3 of 13)	intron (NM_198625, intron 3 of 13)	1315.0	NM_001310591	244654.0	Mm.490385	NM_198625	ENSMUSG00000033763	Mtss1l	ABBA	metastasis suppressor 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106789205-4	chr11	106788693	106789693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177088)	promoter-TSS (NM_177088)	-8.0	NM_001355677	13207.0	Mm.491096	NM_007840	ENSMUSG00000020719	Ddx5	2600009A06Rik|G17P1|HUMP68|Hlr1|p68	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79207887-4	chr11	79207376	79208376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35148.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-16365049-4	chr14	16364520	16365520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009409)	promoter-TSS (NM_009409)	-186.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	6.5	53.5	23.0	14.5	75.5	30.5
Merged-chr12-111538733-4	chr12	111538237	111539237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178041, intron 2 of 11)	CpG-3539	636.0	NM_173363	217869.0	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98710649-4	chr11	98710150	98711150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361995, intron 16 of 25)	intron (NM_001361995, intron 16 of 25)	9337.0	NM_009971	12985.0	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-56301464-4	chr8	56300942	56301942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008278, intron 3 of 6)	intron (NM_008278, intron 3 of 6)	6890.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	2.5	8.5	14.5	0.0	14.0	12.0
Merged-chr5-43233000-4	chr5	43232493	43233493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175937)	promoter-TSS (NM_175937)	-470.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75177585-2	chr14	75177085	75178085	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	41160.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-99287398-4	chr13	99286881	99287881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57297.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	10.5	28.0	36.0	5.0	18.0	17.0
Merged-chr13-45391275-2	chr13	45390775	45391775	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153789, exon 2 of 7)	exon (NM_153789, exon 2 of 7)	1533.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	18.5	85.5	55.5	29.5	113.0	51.5
Merged-chr1-74817024-4	chr1	74816520	74817520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	25001.0	NM_009518	22409.0	Mm.5130	NM_009518	ENSMUSG00000026167	Wnt10a	-	wingless-type MMTV integration site family, member 10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-63377645-4	chr10	63377120	63378120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-4823.0	NM_001253685	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-117843740-4	chr12	117843236	117844236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146040)	promoter-TSS (NM_146040)	-125.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	0.0	4.0	0.5	1.0	10.0	7.5
Merged-chr6-120955365-4	chr6	120954856	120955856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270475, intron 27 of 31)	intron (NM_001270475, intron 27 of 31)	-3488.0	NR_138099	215458.0	Mm.122399	NR_138099		LOC215458	-	uncharacterized LOC215458	ncRNA	19.0	66.5	28.5	14.0	91.0	33.0
Merged-chr8-72219709-4	chr8	72219216	72220216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026455)	promoter-TSS (NM_026455)	-14.0	NM_026455	67922.0	Mm.28327	NM_026455	ENSMUSG00000003039	Fam32a	2510049I19Rik|AW822030|OTAG-12|Otag12	family with sequence similarity 32, member A	protein-coding	41.0	129.0	70.5	68.0	211.5	160.0
Merged-chr4-128983932-4	chr4	128983457	128984457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-9267.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-153566307-4	chr3	153565801	153566801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 1 of 4)	Lx8b|LINE|L1	158832.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17704451-4	chr16	17703919	17704919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285886, intron 2 of 16)	intron (NM_001285886, intron 2 of 16)	18481.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44638839-4	chr10	44638351	44639351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-180103.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-119809320-4	chr6	119808822	119809822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155458, intron 2 of 18)	intron (NR_155458, intron 2 of 18)	38828.0	NM_053204	111173.0	Mm.288860	NM_053204	ENSMUSG00000030172	Erc1	4930404L01Rik|5033405M01Rik|9630025C19Rik|B430107L16Rik|CAST2|ELKS|Elks1|RAB6IP2A|RAB6IP2B|Rab6ip2|mKIAA1081	ELKS/RAB6-interacting/CAST family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-61364521-4	chr3	61364038	61365038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028712)	promoter-TSS (NM_028712)	31.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157078182-1	chr2	157077682	157078682	+	1000.0	f0_c57.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	1083.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-14148132-4	chr10	14147615	14148615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 9 of 9)	RLTR17|LTR|ERVK	181736.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.0	14.5	6.0	0.0	14.0	5.0
Merged-chr15-81466672-4	chr15	81466143	81467143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019712, intron 1 of 4)	CpG	327.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93812459-4	chr16	93811998	93812998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(ACTG)n|Simple_repeat|Simple_repeat	-17597.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	11.5	16.0	17.0	7.5	10.5	16.0
Merged-chr18-82865924-2	chr18	82865424	82866424	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10027.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25250021-4	chr7	25249506	25250506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010155, intron 1 of 3)	CpG	752.0	NM_010155	13875.0	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-124850661-4	chr4	124850150	124851150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142727)	promoter-TSS (NM_001142727)	80.0	NM_001142727	68920.0	Mm.272397	NM_001142727	ENSMUSG00000078570	1110065P20Rik	C530005M16Rik	RIKEN cDNA 1110065P20 gene	protein-coding	32.5	80.5	69.5	28.0	59.5	58.5
Merged-chr10-79854437-4	chr10	79853952	79854952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008956)	promoter-TSS (NM_008956)	20.0	NM_001283013	19205.0	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92279924-4	chr5	92279432	92280432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1751.0	NM_025972	67111.0	Mm.28890	NM_025972	ENSMUSG00000029413	Naaa	2210023K21Rik|3830414F09Rik|Asahl	N-acylethanolamine acid amidase	protein-coding	41.0	121.0	70.0	18.5	65.5	49.0
Merged-chr12-85255651-4	chr12	85255132	85256132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175337, intron 5 of 11)	intron (NM_175337, intron 5 of 11)	-9647.0	NR_105903	102466769.0		NR_105903	ENSMUSG00000098263	Mir6938	Gm27519|mmu-mir-6938	microRNA 6938	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34034107-4	chr11	34033594	34034594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	MTE2a|LTR|ERVL-MaLR	-12834.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122708154-2	chr5	122707657	122708657	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_001310718, intron 1 of 10)	intron (NM_001310718, intron 1 of 10)	613.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	192.0	475.5	378.5	191.5	607.5	443.0
Merged-chr1-180888867-4	chr1	180888383	180889383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4225.0	NM_177099	320202.0	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100683035-4	chr13	100682541	100683541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183115, intron 5 of 11)	intron (NM_183115, intron 5 of 11)	13560.0	NM_001168386	76041.0	Mm.23977	NM_183115	ENSMUSG00000048924	Ccdc125	5830436D01Rik|AL023012	coiled-coil domain containing 125	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70937830-4	chr12	70937297	70938297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019785)	promoter-TSS (NM_019785)	-60.0	NM_019785	56444.0	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38710625-4	chr6	38710108	38711108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 12 of 14)	intron (NM_010433, intron 12 of 14)	47539.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88746026-4	chr3	88745512	88746512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018804, exon 4 of 4)	3' UTR (NM_018804, exon 4 of 4)	26587.0	NM_018804	229521.0	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	3.0	8.0	10.5	8.5	19.5	10.0
Merged-chr10-80919534-2	chr10	80919034	80920034	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-1289.0	NM_010722	16907.0	Mm.7362	NM_010722	ENSMUSG00000062075	Lmnb2	-	lamin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102471162-4	chr15	102470709	102471709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001174073, intron 1 of 12)	CpG	577.0	NM_001174073	18521.0	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85894917-2	chr1	85894417	85895417	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022417, intron 1 of 5)	intron (NM_022417, intron 1 of 5)	407.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86963237-4	chr17	86962790	86963790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145491, exon 1 of 5)	5' UTR (NM_145491, exon 1 of 5)	179.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-101797376-4	chr2	101796898	101797898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	CpG	309.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	103.0	190.0	128.0	68.5	112.5	90.5
Merged-chr5-73292751-4	chr5	73292257	73293257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159889)	promoter-TSS (NM_001159889)	-37.0	NM_001159887	68095.0	Mm.247039	NM_023429	ENSMUSG00000029152	Ociad1	6030432N09Rik|AI481327|AW557942|Asrij|B230209J16Rik|BB021357|Emi2|Imi2|OCIA|TPA018	OCIA domain containing 1	protein-coding	7.0	19.0	4.5	5.5	9.0	7.0
Merged-chr1-183320947-4	chr1	183320435	183321435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181732, intron 8 of 9)	intron (NM_181732, intron 8 of 9)	-23642.0	NR_151660	71678.0	Mm.392270	NM_027861	ENSMUSG00000046836	Brox	0610010K06Rik	BRO1 domain and CAAX motif containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75178879-4	chr11	75178380	75179380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027136)	promoter-TSS (NM_027136)	-72.0	NM_027136	246257.0	Mm.41496	NM_027136	ENSMUSG00000038268	Ovca2	9030414M07Rik	candidate tumor suppressor in ovarian cancer 2	protein-coding	21.0	68.5	48.0	52.0	55.5	54.5
Merged-chr4-142017881-4	chr4	142017388	142018388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131014)	promoter-TSS (NR_131014)	-10.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20810397-2	chr18	20809897	20810897	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-63993.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62357914-4	chr4	62357420	62358420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355385, intron 1 of 27)	intron (NM_001355385, intron 1 of 27)	2676.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72390533-4	chr6	72390041	72391041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_016794, exon 1 of 3)	5' UTR (NM_016794, exon 1 of 3)	126.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30465625-2	chr2	30465125	30466125	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	8574.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-28365561-3	chr11	28365082	28366082	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	218742.0	NM_001166661	216613.0	Mm.93759	NM_181577	ENSMUSG00000032878	Ccdc85a	-	coiled-coil domain containing 85A	protein-coding	1.0	5.5	2.0	0.0	3.0	1.5
Merged-chr6-119471007-4	chr6	119470489	119471489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009525, intron 1 of 4)	MTE2a|LTR|ERVL-MaLR	-3778.0	NM_001271758	22419.0	Mm.321818	NM_009525	ENSMUSG00000030170	Wnt5b	AW545702|Wnt-5b	wingless-type MMTV integration site family, member 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113442588-4	chr6	113442100	113443100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205025)	promoter-TSS (NM_001205025)	31.0	NM_001243739	67767.0	Mm.2053	NM_026365	ENSMUSG00000051256	Jagn1	5830427H10Rik	jagunal homolog 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100159737-4	chr12	100159240	100160240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183155)	promoter-TSS (NM_183155)	-87.0	NM_183155	217827.0	Mm.224076	NM_183155	ENSMUSG00000021179	Nrde2	6720454P05Rik	nrde-2 necessary for RNA interference, domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14675680-4	chr8	14675171	14676171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-212865.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139577270-1	chr4	139576770	139577770	+	1000.0	f1_c57bl6.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	2550.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	3.0	0.0	7.0	7.0	2.5	0.5
Merged-chr9-9653681-4	chr9	9653204	9654204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-240727.0	NR_105745	102466147.0		NR_105745	ENSMUSG00000098408	Mir6237	Gm27411|mmu-mir-6237	microRNA 6237	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-12965822-4	chr7	12965315	12966315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362139)	promoter-TSS (NM_001362139)	-23.0	NM_001362140	243834.0	Mm.133086	NM_178732	ENSMUSG00000004500	Zfp324	A930002M05|D430030K24Rik|ZF5128	zinc finger protein 324	protein-coding	8.0	36.5	24.0	14.0	33.5	30.5
Merged-chr10-127193059-2	chr10	127192559	127193559	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_030714, exon 4 of 6)	exon (NM_030714, exon 4 of 6)	-2190.0	NR_045715	100038591.0	Mm.441071	NR_045715	ENSMUSG00000097331	F420014N23Rik	-	RIKEN cDNA F420014N23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21528074-4	chr9	21527564	21528564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198794, intron 1 of 6)	L2b|LINE|L2	1887.0	NM_206536	382062.0	Mm.325205	NM_206536	ENSMUSG00000057191	AB124611	Gm1706	cDNA sequence AB124611	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-23616618-4	chr5	23616142	23617142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009274)	promoter-TSS (NM_009274)	-71.0	NM_009274	20817.0	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	23.5	79.0	53.5	52.0	55.0	54.5
Merged-chr1-105993951-4	chr1	105993455	105994455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122675, intron 1 of 12)	CpG	3549.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	27.0	155.0	74.5	26.0	153.5	74.0
Merged-chr7-80295038-2	chr7	80294538	80295538	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145150, intron 1 of 13)	intron (NM_145150, intron 1 of 13)	587.0	NM_001285998	233406.0	Mm.227274	NM_145150	ENSMUSG00000038943	Prc1	D7Ertd348e	protein regulator of cytokinesis 1	protein-coding	1.0	11.0	4.5	5.5	20.5	5.5
Merged-chr1-23382764-4	chr1	23382268	23383268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081079, intron 1 of 6)	CpG	407.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30631258-4	chr14	30630745	30631745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5037.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	2.0	7.5	10.0	4.5	1.0	1.5
Merged-chr4-133830583-4	chr4	133830108	133831108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	44123.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	16.0	35.5	28.0	52.0	109.5	62.5
Merged-chr17-34031678-4	chr17	34031173	34032173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205216)	promoter-TSS (NM_001205216)	17.0	NM_001077709	14977.0	Mm.18556	NM_008202	ENSMUSG00000024327	Slc39a7	AA408174|AI117660|AL024048|H-2Ke4|H2-Ke4|Ke-4|Ke4|Ring5|Zip7	solute carrier family 39 (zinc transporter), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-21001752-4	chr18	21001240	21002240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303011)	promoter-TSS (NM_001303011)	-217.0	NM_207623	56515.0	Mm.253542	NM_019706	ENSMUSG00000024317	Rnf138	2410015A17Rik|2810480D20Rik|STRIN|Trif|Trif-d	ring finger protein 138	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-19569667-2	chr4	19569173	19570173	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027769, intron 1 of 15)	CpG	435.0	NM_027769	70568.0	Mm.38390	NM_027769	ENSMUSG00000028228	Cpne3	5430428M23Rik|5730450C07Rik|C85108|CPN3	copine III	protein-coding	38.5	124.0	61.0	78.0	130.5	83.0
Merged-chr10-24160575-4	chr10	24160092	24161092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016797, intron 2 of 9)	intron (NM_016797, intron 2 of 9)	11275.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43349840-4	chr7	43349366	43350366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-1475.0	NM_001271019	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80151055-4	chr18	80150539	80151539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175028, intron 1 of 3)	C-rich|Low_complexity|Low_complexity	443.0	NM_175028	240442.0	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69921527-4	chr11	69921022	69922022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166596)	promoter-TSS (NM_001166596)	-136.0	NM_181582	276770.0	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43642492-1	chr7	43641992	43642992	+	1000.0	f0_c57.idr	intron (NM_028236, intron 4 of 5)	B1_Mus1|SINE|Alu	7753.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95666877-4	chr11	95666388	95667388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008831)	promoter-TSS (NM_008831)	-69.0	NM_008831	18673.0	Mm.263862	NM_008831	ENSMUSG00000038845	Phb	Bap32	prohibitin	protein-coding	3.5	14.0	12.5	6.5	0.0	8.5
Merged-chr15-76327433-4	chr15	76326948	76327948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175399)	promoter-TSS (NM_175399)	51.0	NM_175399	109075.0	Mm.322752	NM_175399	ENSMUSG00000034259	Exosc4	1110039I09Rik|1500001N04Rik|Rrp41	exosome component 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21423732-2	chr16	21423232	21424232	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285894, intron 1 of 45)	intron (NM_001285894, intron 1 of 45)	614.0	NM_001285894	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98729438-4	chr11	98728923	98729923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011869)	promoter-TSS (NM_011869)	12.0	NM_001361995	23989.0	Mm.246493	NM_011869	ENSMUSG00000017210	Med24	911GSE|AU040102|AW547152|D11Ertd307e|DRIP100|Gse2|Pparb2|Pparbp2|R75526|Thrap4|Trap100	mediator complex subunit 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108649396-4	chr9	108648892	108649892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011790)	promoter-TSS (NM_011790)	16.0	NM_011790	23807.0	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-11281757-3	chr10	11281260	11282260	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168297, intron 1 of 2)	CpG	173.0	NM_001168297	71865.0	Mm.276229	NM_027968	ENSMUSG00000047648	Fbxo30	1700026A16Rik|MUSA1	F-box protein 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111933727-4	chr13	111933219	111934219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65783.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127042479-4	chr7	127041960	127042960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145588)	promoter-TSS (NM_145588)	-40.0	NM_145588	110033.0	Mm.286488	NM_145588	ENSMUSG00000030677	Kif22	AU021460|C81217|Kid|Kif22a	kinesin family member 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-65113005-4	chr1	65112514	65113514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175293, intron 5 of 7)	intron (NM_175293, intron 5 of 7)	-9651.0	NM_007774	12964.0	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115162463-2	chr11	115161963	115162963	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012030)	promoter-TSS (NM_012030)	-878.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	6.5	34.0	19.5	7.0	41.0	39.5
Merged-chr2-37430837-4	chr2	37430342	37431342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146253)	promoter-TSS (NM_146253)	77.0	NM_146253	241322.0	Mm.330182	NM_146253	ENSMUSG00000066798	Zbtb6	A830092L04Rik|ZID|Zfp482	zinc finger and BTB domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5725306-4	chr19	5724827	5725827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114595, intron 1 of 17)	intron (NM_001114595, intron 1 of 17)	990.0	NM_001114595	114601.0	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-38561750-4	chr5	38561239	38562239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011715)	promoter-TSS (NM_011715)	-144.0	NM_011715	22388.0	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	28.5	125.0	57.5	40.0	115.5	74.5
Merged-chr7-16049676-4	chr7	16049128	16050128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22217.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172500718-12	chr1	172500158	172501158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178598, intron 1 of 4)	CpG	412.0	NM_178598	21346.0	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	47.5	112.5	115.5	40.5	84.0	37.0
Merged-chr7-126695349-4	chr7	126694855	126695855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175103)	promoter-TSS (NM_175103)	428.0	NM_029420	75764.0	Mm.280573	NM_029420	ENSMUSG00000059772	Slx1b	1110030E23Rik|2410170E21Rik|4833422P03Rik|AI853643|Giyd1|Giyd2	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	protein-coding	3.0	7.5	2.0	3.0	7.5	1.5
Merged-chr8-67494818-4	chr8	67494322	67495322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168577)	promoter-TSS (NM_001168577)	-53.0	NM_001168577	17961.0	Mm.4695	NM_010874	ENSMUSG00000051147	Nat2	AV377607	N-acetyltransferase 2 (arylamine N-acetyltransferase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-93251954-4	chr13	93251447	93252447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51810.0	NM_147176	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	13.0	32.5	18.0	16.5	5.5	26.5
Merged-chr4-141139786-4	chr4	141139250	141140250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025608)	promoter-TSS (NM_001025608)	46.0	NR_102344	213491.0	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32595383-4	chr16	32594879	32595879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13517.0	NM_011638	22042.0	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73090793-4	chr15	73090297	73091297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053068, intron 1 of 2)	CpG	385.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35056609-4	chr7	35056111	35057111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009884)	promoter-TSS (NM_009884)	-45.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120483503-2	chr6	120483003	120484003	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008359, exon 13 of 13)	3' UTR (NM_008359, exon 13 of 13)	10304.0	NM_033567	94047.0	Mm.23088	NM_033567	ENSMUSG00000094626	Tmem121b	AW048664|Cecr6	transmembrane protein 121B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-121956432-4	chr2	121955933	121956933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008545)	promoter-TSS (NM_008545)	-341.0	NM_008545	17147.0	Mm.389349	NM_008545	ENSMUSG00000074881	Mageb3	Mage-b3|Mage-ps1|Mage-rs3|Smage3	melanoma antigen, family B, 3	protein-coding	49.5	149.5	101.0	44.0	123.5	72.0
Merged-chr8-68247159-1	chr8	68246659	68247659	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-29369.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	6.5	8.0	1.0	2.0	5.0	2.0
Merged-chr12-35889533-4	chr12	35889047	35890047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36074.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	19.0	51.0	33.0	27.0	37.5	36.5
Merged-chr1-152582101-4	chr1	152581626	152582626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	43091.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-33809569-2	chr14	33809069	33810069	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_131114)	TTS (NR_131114)	1714.0	NR_131114	218902.0	Mm.107791	NR_131113	ENSMUSG00000115751	4930503F20Rik	4930453C15	RIKEN cDNA 4930503F20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70839795-4	chr8	70839345	70840345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027560)	promoter-TSS (NM_027560)	-125.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	25.0	47.0	31.0	25.0	49.0	31.5
Merged-chr11-101732894-4	chr11	101732394	101733394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144831)	promoter-TSS (NM_144831)	-62.0	NM_144831	217207.0	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29268890-4	chr17	29268402	29269402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_030561, exon 1 of 9)	5' UTR (NM_030561, exon 1 of 9)	114.0	NM_030561	80748.0	Mm.290116	NM_030561	ENSMUSG00000052712	BC004004	2400006G15Rik	cDNA sequence BC004004	protein-coding	12.5	22.5	10.0	1.0	7.0	3.0
Merged-chr15-31530233-4	chr15	31529725	31530725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172606, intron 1 of 25)	intron (NM_172606, intron 1 of 25)	812.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86494033-4	chr6	86493524	86494524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5797.0	NR_040292	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7184533-4	chr9	7184048	7185048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357483)	promoter-TSS (NM_001357483)	43.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19332977-4	chr7	19332481	19333481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12090.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45154398-4	chr7	45153862	45154862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001278207)	promoter-TSS (NM_001278207)	59.0	NM_001278207	68845.0	Mm.181689	NM_029406	ENSMUSG00000003423	Pih1d1	1110061L23Rik|4933413A04Rik|Nop17	PIH1 domain containing 1	protein-coding	142.5	391.5	240.5	160.5	428.5	312.0
Merged-chr3-83841114-4	chr3	83840597	83841597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011905, exon 2 of 3)	5' UTR (NM_011905, exon 2 of 3)	511.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47502200-4	chr17	47501698	47502698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022015)	promoter-TSS (NM_022015)	93.0	NM_001356290	63856.0	Mm.275901	NM_022015	ENSMUSG00000023980	Taf8	AW260255|Tbn	TATA-box binding protein associated factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-109507876-4	chr12	109507359	109508359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33137.0	NR_027652	17263.0	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136149199-2	chr4	136148699	136149699	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5377.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-41239539-4	chr8	41239042	41240042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023662)	promoter-TSS (NM_023662)	-217.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	93.0	185.0	135.0	65.5	138.5	132.0
Merged-chr9-106438391-4	chr9	106437880	106438880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276442)	promoter-TSS (NM_001276442)	-144.0	NM_025371	109652.0	Mm.7165	NM_025371	ENSMUSG00000023262	Acy1	1110014J22Rik|Acy-1	aminoacylase 1	protein-coding	42.0	78.5	53.5	34.0	88.5	72.0
Merged-chr8-46849059-4	chr8	46848514	46849514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109269.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24149247-4	chr10	24148764	24149764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358563)	promoter-TSS (NM_001358563)	-25.0	NM_001358563	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38515418-4	chr15	38514906	38515906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301688, intron 1 of 11)	intron (NM_001301688, intron 1 of 11)	3860.0	NM_001301688	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108197313-4	chr6	108196812	108197812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11729.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107482252-2	chr11	107481752	107482752	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025894, intron 1 of 10)	B3A|SINE|B2	2724.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	5.5	0.0	0.5	0.0	1.0	1.0
Merged-chr3-96233161-2	chr3	96232661	96233661	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5966.0	NM_054045	97114.0	Mm.358797	NM_054045	ENSMUSG00000081058	Hist2h3c2	H3-614|H3.2-614|Hist2h3c2-ps|Hist2h3ca1|M32461	histone cluster 2, H3c2	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr17-17890272-4	chr17	17889754	17890754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008039, intron 1 of 1)	intron (NM_008039, intron 1 of 1)	2430.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3695725-4	chr4	3695236	3696236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	MTEb|LTR|ERVL-MaLR	17615.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	6.5	32.0	31.0	12.5	19.0	14.0
Merged-chr4-148041118-4	chr4	148040634	148041634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161798)	promoter-TSS (NM_001161798)	-55.0	NR_027809	17769.0	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	methylenetetrahydrofolate reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-91460963-4	chr13	91460444	91461444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024186)	promoter-TSS (NM_024186)	-153.0	NM_024272	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr11-80176020-4	chr11	80175529	80176529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 8 of 10)	intron (NM_172133, intron 8 of 10)	-7843.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	25.0	68.5	37.0	29.0	70.0	45.0
Merged-chr3-88058414-4	chr3	88057904	88058904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144897)	promoter-TSS (NM_144897)	91.0	NM_144897	246703.0	Mm.205996	NM_144897	ENSMUSG00000028070	Naxe	AA087124|AI-BP|AIBP|Apoa1bp|Apoa1ip|ESTM37	NAD(P)HX epimerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55450561-4	chr12	55450069	55451069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	42078.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97857905-4	chr6	97857388	97858388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	50830.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	35.0	34.0	27.0	15.5	49.5	23.0
Merged-chr17-34644726-4	chr17	34644236	34645236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019873)	promoter-TSS (NM_019873)	-147.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	16.0	91.5	37.5	15.0	32.0	27.5
Merged-chr9-50553785-4	chr9	50553266	50554266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357222)	promoter-TSS (NM_001357222)	-104.0	NM_001359610	170752.0	Mm.390149	NM_133217	ENSMUSG00000032066	Bco2	B-diox-II|Bcdo2|Bcmo2|CMO2	beta-carotene oxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104334047-4	chr8	104333558	104334558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-6536.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113436462-4	chr13	113435953	113436953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	66391.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24251446-4	chr17	24250943	24251943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007634)	promoter-TSS (NM_007634)	-34.0	NM_007634	12449.0	Mm.77695	NM_007634	ENSMUSG00000072082	Ccnf	CycF|Fbxo1	cyclin F	protein-coding	77.5	146.5	131.5	35.5	44.5	55.5
Merged-chr8-119425825-4	chr8	119425314	119426314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11348.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69513386-4	chr12	69512870	69513870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37820.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	13.5	30.5	32.5	9.0	34.0	30.0
Merged-chr1-135147539-4	chr1	135147030	135148030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026823, intron 1 of 6)	CpG	696.0	NM_026823	68724.0	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84317960-4	chr1	84317480	84318480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33335.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62662258-4	chr4	62661764	62662764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134257, intron 10 of 15)	intron (NM_134257, intron 10 of 15)	-11710.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11950068-4	chr19	11949563	11950563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-15781.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	28.0	62.0	61.5	32.5	19.5	27.5
Merged-chr12-80046792-4	chr12	80046298	80047298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	66215.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105167251-2	chr1	105166751	105167751	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-188756.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr1-64308727-4	chr1	64308239	64309239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-187350.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155473292-2	chr2	155472792	155473792	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32509.0	NM_019825	56406.0	Mm.27592	NM_019825	ENSMUSG00000038369	Ncoa6	AIB3|ASC-2|ASC2|NRC|Ncoa7|PRIP|RAP250|mKIAA0181	nuclear receptor coactivator 6	protein-coding	25.5	48.5	42.5	15.0	57.5	54.5
Merged-chr5-36767514-2	chr5	36767014	36768014	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR73|LTR|ERV1	-18835.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr8-70765514-4	chr8	70765021	70766021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023065, intron 1 of 7)	intron (NM_023065, intron 1 of 7)	1142.0	NM_023065	65972.0	Mm.30241	NM_023065		Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	74.0	255.0	159.5	90.0	201.5	174.0
Merged-chr6-72938089-4	chr6	72937579	72938579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20153.0	NM_001039392	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	7.0	10.0	7.5	4.5	16.0	6.0
Merged-chr9-123985094-3	chr9	123984592	123985592	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-6684.0	NM_007718	12770.0	Mm.423532	NM_007718	ENSMUSG00000064039	Ccr1l1	Cmkbr1l1	chemokine (C-C motif) receptor 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116129344-2	chr11	116128844	116129844	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178802, intron 1 of 5)	intron (NM_178802, intron 1 of 5)	1784.0	NM_178802	338364.0	Mm.439976	NM_178802	ENSMUSG00000054517	Trim65	4732463G12Rik	tripartite motif-containing 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46957954-2	chr17	46957454	46958454	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146078, intron 26 of 46)	intron (NM_146078, intron 26 of 46)	47469.0	NM_008938	19133.0	Mm.291370	NM_008938	ENSMUSG00000023978	Prph2	AOFMD|AVMD|Nmf193|PRPH|RP7|Rd-2|Rd2|Rds|Tspan22|rds	peripherin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-96081541-4	chr16	96081026	96082026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145125, intron 4 of 41)	intron (NM_145125, intron 4 of 41)	902.0	NM_001103179	93871.0	Mm.240871	NM_145125	ENSMUSG00000022914	Brwd1	5330419I02Rik|D530019K20Rik|G1-403-16|Wdr9|repro5	bromodomain and WD repeat domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135962641-4	chr5	135962129	135963129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160366, intron 9 of 10)	CpG	11847.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	27.5	132.5	81.5	28.0	126.5	65.5
Merged-chr7-35066119-4	chr7	35065631	35066631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9565.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88573492-4	chr5	88573006	88574006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289774, intron 1 of 17)	intron (NM_001289774, intron 1 of 17)	8466.0	NM_001289775	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-94538509-5	chr9	94538042	94539042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033145)	promoter-TSS (NM_001033145)	-461.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	38.5	124.0	59.0	45.5	88.0	77.0
Merged-chr4-132048531-2	chr4	132048031	132049031	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	CpG	547.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-81923698-4	chr6	81923210	81924210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177884)	promoter-TSS (NM_177884)	41.0	NM_177884	330361.0	Mm.474487	NM_177884	ENSMUSG00000035125	Gcfc2	A130099G21|AW146020|GCF2|Tcf9	GC-rich sequence DNA binding factor 2	protein-coding	0.5	5.5	1.0	0.0	0.0	0.0
Merged-chr12-40223406-4	chr12	40222909	40223909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035459)	promoter-TSS (NR_035459)	45.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-43479981-4	chr10	43479482	43480482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199028, intron 1 of 3)	CpG	842.0	NM_199028	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43667278-4	chr19	43666770	43667770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145156, intron 1 of 3)	intron (NM_145156, intron 1 of 3)	7611.0	NM_145156	246696.0	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24311913-4	chr2	24311433	24312433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	X7A_LINE|LINE|CR1	20737.0	NM_153077	215274.0	Mm.218750	NM_153077	ENSMUSG00000046845	Il1f10	-	interleukin 1 family, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-56265670-4	chr9	56265189	56266189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172924, intron 3 of 6)	Lx7|LINE|L1	-104619.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-113766489-4	chr11	113765994	113766994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie8|DNA|hAT-Charlie	-14679.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45921474-4	chr7	45920967	45921967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010129)	promoter-TSS (NM_010129)	-41.0	NM_010129	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-8995392-5	chr13	8994898	8995898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027000, intron 1 of 16)	intron (NM_027000, intron 1 of 16)	614.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-14758787-4	chr9	14758285	14759285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029306, intron 3 of 3)	intron (NM_029306, intron 3 of 3)	-6663.0	NM_010242	14345.0	Mm.63450	NM_010242	ENSMUSG00000049307	Fut4	AI451562|CD15|FAL|FucT-IV|LeX|SSEA-1|Ssea1	fucosyltransferase 4	protein-coding	12.0	33.0	21.5	12.0	29.5	22.0
Merged-chr7-134690388-4	chr7	134689899	134690899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033420, intron 1 of 51)	intron (NM_001033420, intron 1 of 51)	19712.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	25.0	54.5	55.0	24.5	85.0	40.5
Merged-chr5-43847725-4	chr5	43847236	43848236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21073.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	27.0	64.5	36.5	29.0	55.5	38.5
Merged-chr13-23534926-4	chr13	23534427	23535427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145073)	promoter-TSS (NM_145073)	-491.0	NM_145073	97908.0	Mm.261657	NM_145073	ENSMUSG00000099517	Hist1h3g	H3.1-221|M32460	histone cluster 1, H3g	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143464566-4	chr5	143464062	143465062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144915)	promoter-TSS (NM_144915)	69.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67899569-4	chr15	67899104	67900104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	359252.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	6.5	4.5	2.5	10.0	12.5	4.0
Merged-chr7-132931110-4	chr7	132930616	132931616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362198)	promoter-TSS (NM_001362198)	-26.0	NM_207302	360216.0	Mm.389984	NM_207302	ENSMUSG00000030967	Zranb1	9330160G10Rik|D7Wsu87e|Gm1956|Trabid	zinc finger, RAN-binding domain containing 1	protein-coding	8.5	12.5	16.5	3.0	7.5	3.5
Merged-chr16-45148768-4	chr16	45148251	45149251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028756, intron 4 of 6)	intron (NM_028756, intron 4 of 6)	9922.0	NM_001356453	74102.0	Mm.264984	NM_028756	ENSMUSG00000022664	Slc35a5	1010001J06Rik|AU021179|BB097433|D16Ertd450e|D730043G07Rik	solute carrier family 35, member A5	protein-coding	19.5	27.0	30.0	8.5	29.5	27.5
Merged-chr2-150136691-4	chr2	150136188	150137188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181266)	promoter-TSS (NM_181266)	-10.0	NM_181266	104348.0	Mm.485851	NM_023266	ENSMUSG00000068134	Zfp120	AI315103|E030042N05Rik|F80|MZF31|Zfp844	zinc finger protein 120	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-123797209-3	chr3	123796719	123797719	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2D|LTR|ERVL	-106367.0	NR_121616	83398.0	Mm.443908	NM_031186	ENSMUSG00000027977	Ndst3	4921531K01Rik|4930511P15Rik|N-HSST 3|NDST-3	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3	protein-coding	9.5	9.0	0.0	15.5	12.5	7.0
Merged-chr7-110630387-4	chr7	110629887	110630887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009627)	TTS (NM_009627)	2730.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-4531255-1	chr5	4530755	4531755	+	1000.0	f0_c57.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	226961.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-85124071-4	chr16	85123564	85124564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	49643.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	33.0	85.5	88.0	67.0	99.5	125.0
Merged-chr17-47737737-4	chr17	47737250	47738250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161723)	promoter-TSS (NM_001161723)	-181.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	30.5	88.0	59.0	23.5	96.0	64.0
Merged-chr10-80929204-4	chr10	80928726	80929726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008655)	promoter-TSS (NM_008655)	-865.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128379641-4	chr7	128379158	128380158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 4 of 4)	intron (NM_026418, intron 4 of 4)	38514.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-37639910-4	chr3	37639440	37640440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305442)	promoter-TSS (NM_001305442)	-7.0	NM_001305441	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27196329-4	chr7	27195819	27196819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015782)	promoter-TSS (NM_015782)	-48.0	NM_001285825	53607.0	Mm.386890	NM_015782	ENSMUSG00000061479	Snrpa	C430021M15Rik|Rnu1a-1|Rnu1a1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-75196542-4	chr9	75196030	75197030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010864, intron 32 of 40)	intron (NM_010864, intron 32 of 40)	-35484.0	NM_001081322	208943.0	Mm.41339	NM_001081322	ENSMUSG00000033590	Myo5c	9130003O20Rik|BB085560|C330029I24	myosin VC	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91756884-4	chr12	91756382	91757382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	29554.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125001351-4	chr6	125000858	125001858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145926, intron 4 of 5)	intron (NM_001145926, intron 4 of 5)	2748.0	NM_001145926	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71526983-4	chr17	71526488	71527488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023294)	promoter-TSS (NM_023294)	-131.0	NM_023294	67052.0	Mm.225956	NM_023294	ENSMUSG00000024056	Ndc80	2610020P18Rik|AV139730|HEC|HEC1|Kntc2	NDC80 kinetochore complex component	protein-coding	67.0	117.5	98.0	46.5	106.5	57.5
Merged-chr11-49243389-4	chr11	49242889	49243889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010794)	promoter-TSS (NM_010794)	-802.0	NM_010794	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118291547-2	chr11	118291047	118292047	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1303.0	NM_001033528	72344.0	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88077329-4	chr1	88076820	88077820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201644, intron 1 of 4)	RLTR17|LTR|ERVK	6541.0	NM_201644	394434.0	Mm.300095	NM_201644	ENSMUSG00000090175	Ugt1a9	UDPGT|UDPGT 1-9|UGT1-09|UGT1.9|UGTP4|Ugt1a12|mUGTBr/P	UDP glucuronosyltransferase 1 family, polypeptide A9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59188811-4	chr2	59188304	59189304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	Lx7|LINE|L1	27954.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145211057-4	chr6	145210549	145211549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133688)	promoter-TSS (NM_133688)	-79.0	NM_177222	320662.0	Mm.207779	NM_177222	ENSMUSG00000043541	Casc1	A230084G12Rik|Las1	cancer susceptibility candidate 1	protein-coding	167.5	437.0	408.0	96.5	280.0	250.5
Merged-chr10-127041981-4	chr10	127041501	127042501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205036)	promoter-TSS (NM_001205036)	69.0	NM_010792	17299.0	Mm.251593	NM_010792	ENSMUSG00000006732	Mettl1	2810012D02Rik	methyltransferase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-73557232-4	chr5	73556723	73557723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153313, intron 8 of 9)	intron (NR_153313, intron 8 of 9)	66197.0	NM_178896	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	14.0	55.0	53.5	9.5	62.0	46.0
Merged-chr10-79883443-4	chr10	79882945	79883945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011178)	TTS (NM_011178)	-2867.0	NM_015779	50701.0	Mm.262194	NM_015779	ENSMUSG00000020125	Elane	Ela2|F430011M15Rik|NE	elastase, neutrophil expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92410329-4	chr16	92409851	92410851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-10273.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32694233-4	chr2	32693712	32694712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010236)	promoter-TSS (NM_010236)	-37.0	NM_010236	14287.0	Mm.3830	NM_010236	ENSMUSG00000009566	Fpgs	AA408187	folylpolyglutamyl synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-76032559-4	chr10	76032051	76033051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177475)	promoter-TSS (NM_177475)	-61.0	NM_177475	64453.0	Mm.80609	NM_177475	ENSMUSG00000049764	Zfp280b	D10Jhu82e|Suhw2	zinc finger protein 280B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-52231999-4	chr11	52231477	52232477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011543)	promoter-TSS (NM_011543)	-18.0	NM_011543	21402.0	Mm.42944	NM_011543	ENSMUSG00000036309	Skp1a	15kDa|2610043E24Rik|2610206H23Rik|EMC19|OCP-II|OCP2|SKP1|Tceb1l|p19A|p19Skp1	S-phase kinase-associated protein 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57532493-4	chr10	57531994	57532994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019760)	promoter-TSS (NM_019760)	35.0	NM_019760	56442.0	Mm.29344	NM_019760	ENSMUSG00000019877	Serinc1	1500011D18Rik|AI315070|AIGP-2|TMS-2|Tde1l|Tde2|Tms2|mKIAA1253	serine incorporator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91457440-2	chr1	91456940	91457940	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011066, intron 1 of 22)	intron (NM_011066, intron 1 of 22)	1888.0	NM_011066	18627.0	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	0.0	6.0	2.5	0.0	5.0	2.5
Merged-chr8-70653454-4	chr8	70652972	70653972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023217, intron 2 of 4)	intron (NM_023217, intron 2 of 4)	6266.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	10.0	23.0	18.0	9.5	10.0	14.0
Merged-chr15-99259763-3	chr15	99259220	99260220	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045627, intron 1 of 2)	intron (NR_045627, intron 1 of 2)	-7759.0	NM_016766	51812.0	Mm.383472	NM_016766	ENSMUSG00000037570	Mcrs1	C78274|ICP22BP|MSP58|P78	microspherule protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36571776-4	chr1	36571268	36572268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-13387.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161251255-4	chr1	161250737	161251737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007453)	promoter-TSS (NM_007453)	-27.0	NM_001303408	11758.0	Mm.186185	NM_007453	ENSMUSG00000026701	Prdx6	1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2	peroxiredoxin 6	protein-coding	10.5	68.0	29.5	0.0	39.0	23.0
Merged-chr11-11691867-4	chr11	11691375	11692375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301863, intron 1 of 7)	intron (NM_001301863, intron 1 of 7)	1698.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-85037179-4	chr2	85036676	85037676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136081)	promoter-TSS (NM_001136081)	56.0	NM_182990	20833.0	Mm.219793	NM_182990	ENSMUSG00000027067	Ssrp1	C81323|Hmg1-rs1|Hmgi-rs3|Hmgox|T160	structure specific recognition protein 1	protein-coding	64.5	142.0	123.5	45.0	131.5	111.0
Merged-chr14-50944133-3	chr14	50943635	50944635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	promoter-TSS (NM_013632)	promoter-TSS (NM_013632)	-168.0	NM_013632	18950.0	Mm.17932	NM_013632	ENSMUSG00000115338	Pnp	AL024301|AU015798|Np|Np-1|Np-2|Pnp1	purine-nucleoside phosphorylase	protein-coding	34.5	187.5	63.5	18.5	61.5	48.0
Merged-chr5-18012113-2	chr5	18011613	18012613	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 5 of 7)	intron (NM_001081143, intron 5 of 7)	49543.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-81983790-4	chr3	81983303	81984303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-8075.0	NM_019911	56720.0	Mm.258622	NM_019911	ENSMUSG00000028011	Tdo2	AA407491|TDO|TO|chky	tryptophan 2,3-dioxygenase	protein-coding	7.0	18.5	34.5	19.5	10.5	27.5
Merged-chr6-91685138-4	chr6	91684641	91685641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 1 of 14)	intron (NM_009320, intron 1 of 14)	1074.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126572495-4	chr8	126571976	126572976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20960.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	5.0	11.5	3.0	5.0	11.5	3.0
Merged-chr4-126126937-4	chr4	126126401	126127401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 4 of 10)	intron (NM_028800, intron 4 of 10)	-21102.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-24298413-4	chr9	24297923	24298923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175678, intron 6 of 9)	ORR1E|LTR|ERVL-MaLR	200405.0	NM_175678	319239.0	Mm.130824	NM_175678	ENSMUSG00000043659	Npsr1	9330128H10Rik|GPRA|Gpr154|MVTR|PGR14|VRR1	neuropeptide S receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4544524-4	chr11	4544068	4545068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028860, intron 1 of 17)	B2_Mm2|SINE|B2	50247.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36073825-3	chr1	36073329	36074329	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	5429.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-149051865-8	chr5	149051297	149052297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313894)	promoter-TSS (NM_001313894)	-181.0	NM_001313894	15289.0	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	47.0	112.0	93.5	51.0	151.0	98.5
Merged-chr6-125426593-4	chr6	125426108	125427108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46104.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-52382133-4	chr10	52381647	52382647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199272)	promoter-TSS (NM_001199272)	-23.0	NM_001199272	94221.0	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100325214-4	chr11	100324659	100325659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5210.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	4.5	3.5	1.5	2.0	6.0	2.0
Merged-chr8-26158775-4	chr8	26158276	26159276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199042, intron 1 of 2)	CpG	607.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166235092-4	chr2	166234593	166235593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38815.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-103343659-4	chr12	103343159	103344159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 2 of 9)	intron (NM_023049, intron 2 of 9)	12342.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-129940153-2	chr5	129939653	129940653	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1956.0	NM_001001327	69568.0	Mm.288718	NM_027121	ENSMUSG00000066735	Vkorc1l1	2310024K08Rik	vitamin K epoxide reductase complex, subunit 1-like 1	protein-coding	1.5	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29805192-4	chr19	29804691	29805691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172836, intron 1 of 7)	CpG	818.0	NM_172836	240613.0	Mm.313351	NM_172836	ENSMUSG00000046138	9930021J03Rik	Gm9832|mKIAA2026	RIKEN cDNA 9930021J03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-149184443-4	chr5	149183931	149184931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286825)	promoter-TSS (NM_001286825)	-129.0	NM_001115153	231915.0	Mm.29402	NM_001013378	ENSMUSG00000041264	Uspl1	E430026A01Rik	ubiquitin specific peptidase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-47080960-4	chr7	47080460	47081460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163565, intron 11 of 13)	intron (NM_001163565, intron 11 of 13)	2264.0	NR_106023	102465639.0		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129406215-4	chr6	129405719	129406719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001204239)	TTS (NM_001204239)	-2643.0	NM_001205363	232414.0	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	7.5	23.5	58.5	32.0	39.0	39.5
Merged-chr17-17448871-4	chr17	17448374	17449374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025681, intron 4 of 5)	intron (NM_025681, intron 4 of 5)	46188.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57906845-4	chr15	57906335	57907335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5364.0	NM_001081396	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	40.5	85.0	65.5	17.5	79.5	74.5
Merged-chr3-148804059-4	chr3	148803561	148804561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	150574.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53529043-4	chr19	53528532	53529532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085390)	promoter-TSS (NM_001085390)	-286.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113438319-2	chr13	113437819	113438819	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64525.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-72215147-4	chr11	72214655	72215655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163728)	promoter-TSS (NM_001163728)	17.0	NM_001163728	75304.0	Mm.340776	NM_001163728		4930563E22Rik	-	RIKEN cDNA 4930563E22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141060686-4	chr4	141060188	141061188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145958)	promoter-TSS (NM_001145958)	-143.0	NM_001145958	230872.0	Mm.80685	NM_172122	ENSMUSG00000040860	Crocc	-	ciliary rootlet coiled-coil, rootletin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116666280-4	chr6	116665789	116666789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178045, intron 1 of 10)	L1MA4|LINE|L1	7547.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19822783-4	chr7	19822282	19823282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033601)	promoter-TSS (NM_033601)	-27.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36454498-4	chr18	36453978	36454978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026027)	promoter-TSS (NM_026027)	17.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-185204060-4	chr1	185203546	185204546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163754)	promoter-TSS (NM_001163754)	-122.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	165.5	303.5	240.0	57.5	164.0	115.0
Merged-chr5-100636979-4	chr5	100636473	100637473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37283.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	22.0	58.0	32.5	35.0	55.0	46.5
Merged-chr18-31634980-4	chr18	31634478	31635478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357555)	promoter-TSS (NM_001357555)	-150.0	NM_001357555	269003.0	Mm.194538	NM_172965	ENSMUSG00000024260	Sap130	2610304F09Rik|6720406D06	Sin3A associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-18023014-4	chr10	18022512	18023512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359560)	promoter-TSS (NM_001359560)	78.0	NM_001359560	73112.0	Mm.276041	NM_028440	ENSMUSG00000078453	Abracl	1700028I04Rik|3110003A17Rik	ABRA C-terminal like	protein-coding	3.0	10.0	11.0	5.0	3.0	6.0
Merged-chr7-35172008-4	chr7	35171509	35172509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14376.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	1.0	1.5	5.5	1.0	9.0	2.0
Merged-chr17-84117003-4	chr17	84116499	84117499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38339.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-73745090-4	chr18	73744598	73745598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053255, intron 2 of 3)	intron (NM_053255, intron 2 of 3)	9381.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	6.0	32.0	6.5	3.5	24.5	5.5
Merged-chr2-128698858-4	chr2	128698354	128699354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008587)	promoter-TSS (NM_008587)	-61.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-48555248-4	chr6	48554749	48555749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177736, intron 1 of 2)	RLTR42|LTR|ERVK	450.0	NM_177736	243371.0	Mm.290764	NM_177736	ENSMUSG00000073096	Lrrc61	BC027309	leucine rich repeat containing 61	protein-coding	49.0	75.0	83.5	63.5	76.5	59.5
Merged-chr15-78947851-4	chr15	78947326	78948326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_138579, exon 1 of 24)	5' UTR (NM_138579, exon 1 of 24)	102.0	NM_001039155	110253.0	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	15.5	11.5	0.0	8.5	6.0	2.5
Merged-chr2-120134926-4	chr2	120134411	120135411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 2 of 5)	intron (NM_133838, intron 2 of 5)	19664.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	6.0	10.0	12.5	6.0	10.0	12.5
Merged-chr9-78109107-4	chr9	78108582	78109582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023605)	promoter-TSS (NM_023605)	-17.0	NM_001081490	71538.0	Mm.28584	NM_023605	ENSMUSG00000001366	Fbxo9	9030401P18Rik|AA986398	f-box protein 9	protein-coding	54.5	148.0	72.0	52.5	119.5	88.5
Merged-chr2-154790900-4	chr2	154790375	154791375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001139511)	promoter-TSS (NM_001139511)	-235.0	NM_001139512	19383.0	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	10.0	36.5	28.0	9.5	26.0	31.0
Merged-chr4-124705284-4	chr4	124704724	124705724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010213, intron 1 of 5)	intron (NM_010213, intron 1 of 5)	4525.0	NM_010213	14201.0	Mm.331856	NM_010213	ENSMUSG00000032643	Fhl3	SLIM2	four and a half LIM domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9002725-4	chr3	9002231	9003231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	1473.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	43.5	92.0	54.0	43.0	82.5	51.0
Merged-chr11-4096768-4	chr11	4096260	4097260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_144520)	TTS (NM_144520)	-1329.0	NM_026443	67900.0	Mm.41719	NM_026443	ENSMUSG00000004748	Mtfp1	1700020C11Rik|2610507A21Rik|AV005788|Mtp18	mitochondrial fission process 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78527515-4	chr9	78527001	78528001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45777.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99999659-4	chr12	99999144	100000144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	ORR1C1|LTR|ERVL-MaLR	35145.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77825485-3	chr9	77824982	77825982	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70947.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	31.5	107.5	70.5	10.5	51.0	27.0
Merged-chr3-144561755-4	chr3	144561265	144562265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355234, intron 1 of 6)	MTE2b|LTR|ERVL-MaLR	8451.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78257392-4	chr15	78256899	78257899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008677, intron 7 of 9)	RSINE1|SINE|B4	12588.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	112.0	310.5	182.5	106.0	285.0	219.0
Merged-chr2-71344091-4	chr2	71343604	71344604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 2 of 17)	intron (NM_172436, intron 2 of 17)	23450.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53899355-4	chr18	53898849	53899849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152809, intron 2 of 12)	intron (NM_152809, intron 2 of 12)	37236.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	21.5	15.5	28.5	13.0	75.5	39.5
Merged-chr17-81706777-4	chr17	81706277	81707277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	31610.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96263302-4	chr3	96262748	96263748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033596)	promoter-TSS (NM_033596)	69.0	NM_033596	97122.0	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	73.5	234.5	99.0	44.0	118.0	70.5
Merged-chr5-130172941-2	chr5	130172441	130173441	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359233, intron 1 of 7)	B1_Mur4|SINE|Alu	1122.0	NM_001359233	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-22855258-3	chr5	22854738	22855738	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359998, intron 1 of 3)	intron (NM_001359998, intron 1 of 3)	-108354.0	NR_027362	330052.0	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	44.5	89.5	78.5	4.0	6.5	1.0
Merged-chr10-33951296-4	chr10	33950848	33951848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153113)	promoter-TSS (NR_153113)	-89.0	NR_153113	72580.0	Mm.248081	NM_028287	ENSMUSG00000039531	Zufsp	2700019D07Rik	zinc finger with UFM1-specific peptidase domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38339007-4	chr18	38338540	38339540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011937)	promoter-TSS (NM_011937)	-47.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25109538-4	chr7	25109044	25110044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163556, intron 5 of 13)	intron (NM_001163556, intron 5 of 13)	-12369.0	NR_105855	102465968.0		NR_105855	ENSMUSG00000098441	Mir6537	Gm27808|mmu-mir-6537	microRNA 6537	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65658978-4	chr3	65658492	65659492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106200)	promoter-TSS (NR_106200)	-296.0	NR_106200	102465905.0		NR_106200	ENSMUSG00000098944	Mir8120	Gm27637|mmu-mir-8120	microRNA 8120	ncRNA	57.0	114.0	81.5	74.0	126.5	127.0
Merged-chr6-108606400-2	chr6	108605900	108606900	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_104577, intron 3 of 6)	MIR|SINE|MIR	16767.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0.5	26.5	7.5	5.0	8.5	5.5
Merged-chr3-108797968-4	chr3	108797454	108798454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011504, intron 16 of 18)	intron (NM_011504, intron 16 of 18)	42548.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3981604-4	chr4	3981110	3982110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38053.0	NM_181989	242285.0	Mm.98096	NM_181989	ENSMUSG00000028236	Sdr16c5	Rdhe2|Scdr9	short chain dehydrogenase/reductase family 16C, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-103760936-4	chr5	103760445	103761445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080798, intron 1 of 19)	intron (NM_001080798, intron 1 of 19)	6372.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29521417-2	chr6	29520917	29521917	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5208.0	NM_001311083	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-131371165-4	chr7	131370673	131371673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039534)	promoter-TSS (NM_001039534)	27.0	NM_001039534	214580.0	Mm.272948	NM_177609	ENSMUSG00000063179	Pstk	5430423O14Rik|5730458D16Rik|Gm1099|R75284	phosphoseryl-tRNA kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142724250-2	chr5	142723750	142724750	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001122730)	TTS (NM_001122730)	22149.0	NM_146257	243328.0	Mm.125942	NM_146257	ENSMUSG00000050822	Slc29a4	ENT4|mPMAT	solute carrier family 29 (nucleoside transporters), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136831880-4	chr6	136831380	136832380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001039558, exon 2 of 2)	5' UTR (NM_001039558, exon 2 of 2)	3037.0	NM_178776	320135.0	Mm.386899	NM_178776	ENSMUSG00000047515	BC049715	-	cDNA sequence BC049715	protein-coding	35.0	64.0	69.0	11.0	8.5	13.5
Merged-chr7-97123561-4	chr7	97123068	97124068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	41817.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	20.0	29.0	31.0	21.0	33.5	37.0
Merged-chr3-115815660-4	chr3	115815173	115816173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72386.0	NR_027894	68161.0	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	15.5	38.5	31.5	17.5	73.0	31.5
Merged-chr19-23057041-4	chr19	23056538	23057538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84188.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	61.0	44.5	60.5	4.0	38.5	15.5
Merged-chr17-62574742-4	chr17	62574219	62575219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	306598.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119824252-4	chr8	119823754	119824754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	16325.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180566672-2	chr2	180566172	180567172	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14550.0	NM_028479	73247.0	Mm.426558	NM_028479	ENSMUSG00000027569	Mrgbp	1600027N09Rik|AW060503|C80444	MRG/MORF4L binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98863579-4	chr11	98863089	98864089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197940)	promoter-TSS (NM_197940)	-9.0	NM_197940	68524.0	Mm.28661	NM_197940	ENSMUSG00000038013	Wipf2	1110014J05Rik|5730509C05Rik|AA407487|Gm1176|Wich|Wire	WAS/WASL interacting protein family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50294332-4	chr6	50293818	50294818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347213, exon 24 of 24)	3' UTR (NM_001347213, exon 24 of 24)	-32549.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79172686-4	chr12	79172194	79173194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016800)	promoter-TSS (NM_016800)	-236.0	NM_016800	53612.0	Mm.265929	NM_016800	ENSMUSG00000021124	Vti1b	AU015348|GES30|MVti1b|SNARE|Vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding	103.5	205.0	206.0	90.0	197.0	176.5
Merged-chr6-90737608-4	chr6	90737108	90738108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356440, intron 1 of 13)	intron (NM_001356440, intron 1 of 13)	-21079.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129129707-4	chr2	129129235	129130235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025395)	promoter-TSS (NM_025395)	35.0	NM_025395	66170.0	Mm.40621	NM_025395	ENSMUSG00000037938	Chchd5	1110027L01Rik|AW045710	coiled-coil-helix-coiled-coil-helix domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91984738-4	chr2	91984282	91985282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011957, intron 10 of 11)	C-rich|Low_complexity|Low_complexity	-21219.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128526744-4	chr10	128526230	128527230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011843)	promoter-TSS (NM_011843)	-871.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-121474037-4	chr2	121473549	121474549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081975)	promoter-TSS (NM_001081975)	-26.0	NM_001081975	100034361.0	Mm.270393	NM_001081975	ENSMUSG00000048222	Mfap1b	-	microfibrillar-associated protein 1B	protein-coding	41.0	125.5	85.0	31.5	147.5	153.5
Merged-chr13-85289366-6	chr13	85288895	85289895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145452)	promoter-TSS (NM_145452)	91.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	34.5	61.0	59.0	30.5	87.5	54.0
Merged-chr7-143008194-4	chr7	143007698	143008698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020286, intron 2 of 7)	intron (NM_020286, intron 2 of 7)	2539.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24165836-4	chr10	24165314	24166314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016797, intron 2 of 9)	intron (NM_016797, intron 2 of 9)	16497.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34647100-4	chr17	34646604	34647604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017406)	promoter-TSS (NM_017406)	-42.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	53.5	116.0	86.5	80.0	147.5	120.0
Merged-chr16-10545857-2	chr16	10545357	10546357	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177562, intron 1 of 22)	MIRb|SINE|MIR	518.0	NM_001204229	74374.0	Mm.159176	NM_177562	ENSMUSG00000068663	Clec16a	4932416N17Rik|curt|mKIAA0350	C-type lectin domain family 16, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152798310-4	chr1	152797800	152798800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1853.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130841772-2	chr4	130841272	130842272	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49235.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-89257208-4	chr9	89256698	89257698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45814.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-83055414-4	chr3	83054918	83055918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016784)	promoter-TSS (NM_016784)	-120.0	NM_016784	53317.0	Mm.286349	NM_016784	ENSMUSG00000027998	Plrg1	AA958940|C80566|Tango4	pleiotropic regulator 1	protein-coding	2.0	5.5	2.0	0.0	17.5	2.5
Merged-chr1-159225651-4	chr1	159225146	159226146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6554.0	NM_001360878	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	7.0	20.5	3.5	1.5	11.5	10.5
Merged-chr10-91123452-4	chr10	91122914	91123914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133668, intron 2 of 7)	intron (NM_133668, intron 2 of 7)	549.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70974632-4	chr12	70974242	70975242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001310595, exon 1 of 11)	5' UTR (NM_001310595, exon 1 of 11)	119.0	NM_011184	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67462095-4	chr7	67461633	67462633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89275.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	169.5	358.0	240.0	211.5	380.0	292.0
Merged-chr18-37880388-4	chr18	37879879	37880879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007858, intron 16 of 26)	intron (NM_007858, intron 16 of 26)	-25719.0	NR_105945	102465592.0		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42045438-4	chr19	42044926	42045926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026152)	promoter-TSS (NM_026152)	-425.0	NM_026152	67432.0	Mm.24196	NM_026152	ENSMUSG00000025176	Hoga1	0610010D20Rik|Dhdpsl|Npl2	4-hydroxy-2-oxoglutarate aldolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43044057-4	chr4	43043549	43044549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045567, intron 1 of 7)	intron (NR_045567, intron 1 of 7)	2171.0	NR_045567	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-53569909-4	chr17	53569399	53570399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151733, intron 1 of 16)	intron (NR_151733, intron 1 of 16)	2928.0	NR_151733	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-146010937-4	chr2	146010450	146011450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76166.0	NM_175280	78774.0	Mm.136347	NM_175280	ENSMUSG00000037143	Cfap61	4930529M08Rik|BB178539|BC024760	cilia and flagella associated protein 61	protein-coding	7.0	12.5	10.5	1.0	4.0	14.0
Merged-chr5-139398005-4	chr5	139397516	139398516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	8112.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	29.0	82.5	57.5	28.0	83.0	61.5
Merged-chr16-36930992-4	chr16	36930506	36931506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030035, intron 20 of 21)	intron (NM_030035, intron 20 of 21)	-3977.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84982290-4	chr8	84981801	84982801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3553.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	95.0	408.0	275.0	151.0	395.0	257.0
Merged-chr8-35716678-2	chr8	35716180	35717180	+	1000.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	109879.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	5.0	14.5	7.5	0.0	0.0	5.0
Merged-chr16-91438231-4	chr16	91437724	91438724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26880.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27716515-4	chr2	27716006	27717006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	5923.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122369180-4	chr2	122368667	122369667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013829)	promoter-TSS (NM_001013829)	-249.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	10.5	8.0	21.0	1.0	5.0	22.0
Merged-chr5-23433950-4	chr5	23433430	23434430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026984)	promoter-TSS (NM_026984)	423.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	131.0	410.5	291.5	198.0	355.5	301.0
Merged-chr7-127918418-2	chr7	127917918	127918918	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360699, intron 3 of 10)	B2_Mm2|SINE|B2	5404.0	NM_001360699	67773.0	Mm.425492	NM_026370	ENSMUSG00000030801	Kat8	2010203C02Rik|5830450F21Rik|D7Ertd629e|MOF|MYST-1|Myst1	K(lysine) acetyltransferase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119415570-4	chr4	119415057	119416057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001270435)	promoter-TSS (NM_001270435)	-36.0	NM_029286	73332.0	Mm.425204	NM_028506	ENSMUSG00000028637	Ccdc30	1700001O02Rik|1700041C02Rik|1700111D19Rik|4930445I03Rik	coiled-coil domain containing 30	protein-coding	0.0	1.0	0.0	0.0	0.0	7.0
Merged-chr13-43786464-4	chr13	43785961	43786961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	1349.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59839825-4	chr11	59839326	59840326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011991)	promoter-TSS (NM_011991)	-59.0	NM_011991	26572.0	Mm.40	NM_011991	ENSMUSG00000019373	Cops3	Csn3|Sgn3	COP9 signalosome subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136827497-5	chr6	136827036	136828036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021714, intron 1 of 11)	intron (NM_021714, intron 1 of 11)	680.0	NM_021714	60321.0	Mm.141197	NM_021714	ENSMUSG00000030216	Wbp11	2510026P17Rik|D6Wsu113e|Npwbp|SIPP1	WW domain binding protein 11	protein-coding	299.0	525.5	413.0	259.0	452.0	387.0
Merged-chr5-137107224-2	chr5	137106724	137107724	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8983.0	NM_201373	384309.0	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132735393-4	chr7	132734887	132735887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347630, intron 3 of 3)	intron (NM_001347630, intron 3 of 3)	41529.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90727444-4	chr16	90726948	90727948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025642)	promoter-TSS (NM_025642)	-77.0	NM_025642	66578.0	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118053240-4	chr10	118052743	118053743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-88544.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	283.0	695.5	556.0	318.5	598.5	536.5
Merged-chr2-118926490-4	chr2	118925966	118926966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028117)	promoter-TSS (NM_028117)	-31.0	NM_028117	72136.0	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	13.0	1.5	16.5	6.5	4.0	2.5
Merged-chr2-160335251-4	chr2	160334743	160335743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7749.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	12.0	1.5	8.0	7.5	8.5	4.5
Merged-chr6-54284515-4	chr6	54284019	54285019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 7 of 12)	intron (NM_001163640, intron 7 of 12)	11697.0	NM_023543	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	30.5	70.0	52.0	27.5	78.0	62.0
Merged-chr1-88277051-2	chr1	88276551	88277551	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172505, intron 2 of 4)	intron (NM_172505, intron 2 of 4)	506.0	NM_172505	212427.0	Mm.384762	NM_172505		A730008H23Rik	Fleg1	RIKEN cDNA A730008H23 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91841132-4	chr16	91840628	91841628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 18 of 28)	intron (NM_001110275, intron 18 of 28)	90502.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-66861120-4	chr8	66860622	66861622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163564, intron 1 of 7)	CpG	905.0	NM_001163564	234344.0	Mm.334561	NM_001163564	ENSMUSG00000014907	Naf1	Gm174	nuclear assembly factor 1 ribonucleoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-52288082-4	chr9	52287564	52288564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119953.0	NM_001162921	244871.0	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	0.0	0.0	1.5	0.0	0.0	1.5
Merged-chr19-47579599-7	chr19	47579126	47580126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009289)	promoter-TSS (NM_009289)	-393.0	NM_009289	20874.0	Mm.281011	NM_009289	ENSMUSG00000025060	Slk	9A2|AV021402|AW411554|Etk4|SMAK|Stk2|mKIAA0204|mSLK	STE20-like kinase	protein-coding	11.0	59.5	21.0	8.5	28.0	35.5
Merged-chr8-77444887-4	chr8	77444298	77445298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 3 of 22)	intron (NM_030113, intron 3 of 22)	-72258.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77290391-2	chr10	77289891	77290891	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_004429)	TTS (NR_004429)	31091.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45784317-2	chr19	45783817	45784817	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151594)	promoter-TSS (NR_151594)	-764.0	NM_023799	76055.0	Mm.122725	NM_023799	ENSMUSG00000025220	Mgea5	Hy5|Ncoat|OGA	meningioma expressed antigen 5 (hyaluronidase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9173597-4	chr13	9173100	9174100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001311117, exon 17 of 17)	3' UTR (NM_001311117, exon 17 of 17)	79719.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11602646-3	chr2	11602143	11603143	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152824, intron 1 of 11)	intron (NM_152824, intron 1 of 11)	556.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119389968-4	chr11	119389459	119390459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035453)	promoter-TSS (NR_035453)	-513.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	113.0	292.0	230.0	250.0	365.5	292.5
Merged-chr4-35846-1	chr4	35346	36346	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-3136237.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29047950-4	chr19	29047461	29048461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021299)	promoter-TSS (NM_021299)	-59.0	NM_021299	56248.0	Mm.196067	NM_021299	ENSMUSG00000024782	Ak3	AA407498|AI506714|AK-3|Ak3l|Ak3l1|Akl3l	adenylate kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75655924-4	chr11	75655411	75656411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080775)	promoter-TSS (NM_001080775)	-104.0	NM_001080775	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	55.0	106.5	96.5	50.0	104.0	78.5
Merged-chr2-129380956-4	chr2	129380461	129381461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9822.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	196.0	484.0	266.5	188.0	480.0	276.0
Merged-chr3-89774617-4	chr3	89774123	89775123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027315, intron 1 of 12)	intron (NM_027315, intron 1 of 12)	1014.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39435052-4	chr10	39434540	39435540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	65241.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-15463590-4	chr6	15463094	15464094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-257067.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97306295-1	chr6	97305795	97306795	+	1000.0	f1_balb.idr	intron (NM_145148, intron 17 of 23)	intron (NM_145148, intron 17 of 23)	-53515.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	2.5	5.5	3.5	4.5	0.0	2.0
Merged-chr14-45251813-4	chr14	45251302	45252302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027518, intron 3 of 6)	Lx7|LINE|L1	32085.0	NM_027518	70713.0	Mm.343793	NM_027518	ENSMUSG00000049092	Gpr137c	6330416L11Rik|Gm908|TM7SF1L2	G protein-coupled receptor 137C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75835556-4	chr10	75835068	75836068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010361)	promoter-TSS (NM_010361)	-687.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6391371-2	chr11	6390871	6391871	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3754.0	NM_001005867	52915.0	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126921039-4	chr8	126920530	126921530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24891.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118869233-5	chr10	118868781	118869781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001014390)	promoter-TSS (NM_001014390)	-378.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141559349-4	chr4	141558849	141559849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13187.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	126.0	292.5	246.5	156.0	255.0	220.0
Merged-chr19-3882464-4	chr19	3881944	3882944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271496, intron 3 of 11)	intron (NM_001271496, intron 3 of 11)	22786.0	NM_016921	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-16237841-2	chr9	16237341	16238341	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	140390.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141562822-2	chr7	141562322	141563322	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357068, intron 1 of 21)	intron (NM_001357068, intron 1 of 21)	642.0	NM_007459	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-21847577-4	chr4	21847079	21848079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025669)	promoter-TSS (NM_025669)	-4.0	NM_025669	66625.0	Mm.100117	NM_025669	ENSMUSG00000028248	Pnisr	5730406M06Rik|AA673174|Pinsr|Sfrs18|Srsf18	PNN interacting serine/arginine-rich	protein-coding	28.0	78.0	56.0	30.0	68.0	60.5
Merged-chr10-19591897-4	chr10	19591399	19592399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010511)	promoter-TSS (NM_010511)	-50.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	110.5	309.5	241.0	140.5	248.0	197.5
Merged-chr8-71668272-4	chr8	71667764	71668764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 1 of 41)	intron (NM_001029873, intron 1 of 41)	3493.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84655060-2	chr3	84654560	84655560	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-11132.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33954935-4	chr16	33954429	33955429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009471, exon 6 of 6)	3' UTR (NM_009471, exon 6 of 6)	12109.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-77033516-4	chr14	77033009	77034009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172488, intron 4 of 7)	intron (NM_172488, intron 4 of 7)	3108.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	62.0	164.5	103.0	58.0	152.5	89.5
Merged-chr11-55457689-2	chr11	55457189	55458189	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 1 of 3)	intron (NM_009720, intron 1 of 3)	3519.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59752451-4	chr15	59751949	59752949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	42510.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-151536863-4	chr2	151536380	151537380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5603.0	NR_126058	14225.0	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-24653833-4	chr18	24653344	24654344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026779, exon 1 of 15)	5' UTR (NM_026779, exon 1 of 15)	153.0	NM_026779	68591.0	Mm.28252	NM_026779	ENSMUSG00000039616	Mocos	1110018O12Rik|HMCS|MCS|MOS	molybdenum cofactor sulfurase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104641726-4	chr8	104641241	104642241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026753)	promoter-TSS (NM_026753)	-13.0	NM_026753	68523.0	Mm.279	NM_026753	ENSMUSG00000031879	Fam96b	1110019N10Rik	family with sequence similarity 96, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85518408-4	chr12	85517911	85518911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44521.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102186381-4	chr2	102185872	102186872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290784)	promoter-TSS (NM_001290784)	88.0	NM_178886	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	2.0	0.0	0.0	2.0	0.0	0.0
Merged-chr3-7503454-4	chr3	7502939	7503939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173181)	promoter-TSS (NM_173181)	13.0	NM_173181	67306.0	Mm.332366	NM_173181	ENSMUSG00000043542	Zc2hc1a	3110050N22Rik|AI790358|AU023959|Fam164a	zinc finger, C2HC-type containing 1A	protein-coding	33.0	117.5	56.5	34.5	124.0	62.5
Merged-chr7-141268610-4	chr7	141268136	141269136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028069)	TTS (NM_028069)	-2212.0	NM_001252600	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-38010631-3	chr19	38010148	38011148	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 3 of 53)	intron (NM_001302140, intron 3 of 53)	32929.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	20.0	47.5	78.5	40.0	73.0	66.0
Merged-chr1-10039744-4	chr1	10039238	10040238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026493, intron 1 of 29)	GC_rich|Low_complexity|Low_complexity	1520.0	NM_026493	211660.0	Mm.244046	NM_026493	ENSMUSG00000056763	Cspp1	2310020J12Rik|4930413O22Rik|AA387550|BC055915|Cspp2|Cspp3	centrosome and spindle pole associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95842274-4	chr11	95841815	95842815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284397)	promoter-TSS (NM_001284397)	20.0	NM_001284393	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99875495-4	chr15	99874986	99875986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113545)	promoter-TSS (NM_001113545)	-30.0	NM_001113545	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8843505-2	chr4	8843005	8844005	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 18 of 36)	intron (NM_001355382, intron 18 of 36)	92181.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132010624-4	chr4	132010131	132011131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	38447.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87509280-4	chr6	87508789	87509789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	L1M4c|LINE|L1	-12962.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	30.5	46.0	29.5	35.5	41.5	25.5
Merged-chr18-77065066-4	chr18	77064585	77065585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164167)	promoter-TSS (NM_001164167)	-123.0	NM_008602	17344.0	Mm.6370	NM_008602	ENSMUSG00000025423	Pias2	6330408K17Rik|AI462206|ARIP3|AU018068|Dib|Miz1|PIASxalpha|PIASxb|PIASxbeta|SIZ2	protein inhibitor of activated STAT 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84737819-4	chr8	84737335	84738335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081982, intron 2 of 9)	intron (NM_001081982, intron 2 of 9)	36378.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0.5	2.0	0.0	0.0	0.0	2.5
Merged-chr7-16842841-4	chr7	16842355	16843355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252458)	promoter-TSS (NM_001252458)	-47.0	NM_001252458	101540.0	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80926247-2	chr10	80925747	80926747	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3844.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140705855-2	chr5	140705355	140706355	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276287, intron 1 of 13)	intron (NM_001276287, intron 1 of 13)	789.0	NM_001276287	231841.0	Mm.271932	NM_172724	ENSMUSG00000000148	Brat1	AA881470|Baat1	BRCA1-associated ATM activator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121249858-4	chr5	121249345	121250345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181421, intron 1 of 75)	intron (NM_181421, intron 1 of 75)	29626.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	14.0	25.0	9.5	0.5	16.0	22.5
Merged-chr7-142396760-4	chr7	142396281	142397281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8911.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	45.5	70.5	66.5	14.5	51.5	43.5
Merged-chr16-50092989-4	chr16	50092499	50093499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20147.0	NR_045935	224180.0	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100509443-4	chr5	100508940	100509940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8801.0	NM_001359914	231506.0	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75699997-4	chr7	75699471	75700471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 16 of 36)	intron (NM_029332, intron 16 of 36)	-148367.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88439872-4	chr4	88439383	88440383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025760)	promoter-TSS (NM_025760)	-957.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	4.0	5.5	9.5	7.5	12.5	13.5
Merged-chr7-80832412-4	chr7	80831913	80832913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19-int|LTR|ERVK	-29082.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	19.0	37.5	41.0	19.5	31.5	33.5
Merged-chr16-4420517-4	chr16	4420015	4421015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291910)	promoter-TSS (NM_001291910)	-17.0	NM_009624	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161517560-4	chr1	161517031	161518031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22874.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-8997235-4	chr5	8996727	8997727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023733)	promoter-TSS (NM_023733)	-81.0	NM_023733	74114.0	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117910629-4	chr10	117910128	117911128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER44B|DNA|TcMar-Tigger	-14831.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	45.0	149.5	76.5	84.0	225.5	134.5
Merged-chr6-29502775-2	chr6	29502275	29503275	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029985, intron 5 of 37)	intron (NM_001029985, intron 5 of 37)	5177.0	NM_001029985	333088.0	Mm.332961	NM_001029985	ENSMUSG00000059022	Kcp	AW060220|CRIM-2|Crim2|Gm793|KCP-1	kielin/chordin-like protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-44102502-4	chr1	44102014	44103014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029368)	promoter-TSS (NM_029368)	-73.0	NM_001356297	75623.0	Mm.348017	NM_029368	ENSMUSG00000026049	Tex30	1700029F09Rik|3110030D08Rik	testis expressed 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139408698-4	chr5	139408200	139409200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177000, intron 1 of 1)	intron (NM_177000, intron 1 of 1)	2313.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-44781610-2	chr17	44781110	44782110	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178652, intron 1 of 11)	MTEa-int|LTR|ERVL-MaLR	4444.0	NM_178652	109115.0	Mm.431327	NM_178652	ENSMUSG00000038954	Supt3	2310066G22Rik|AI315192|SPT3|SPT3L|Supt3h	suppressor of Ty 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118606639-4	chr9	118606126	118607126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133721)	promoter-TSS (NM_133721)	-83.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39369676-4	chr10	39369162	39370162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122892)	promoter-TSS (NM_001122892)	-137.0	NM_001122892	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61561588-4	chr8	61561087	61562087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	29582.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-40500617-4	chr3	40500098	40501098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	22314.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103318750-2	chr15	103318250	103319250	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356627, intron 3 of 7)	intron (NM_001356627, intron 3 of 7)	-8312.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-38204869-4	chr13	38204370	38205370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026382)	promoter-TSS (NM_026382)	-69.0	NM_026382	67797.0	Mm.250783	NM_026382	ENSMUSG00000021431	Snrnp48	1110050F08Rik|6530403A03Rik|C6orf151	small nuclear ribonucleoprotein 48 (U11/U12)	protein-coding	12.0	25.5	22.0	25.5	27.0	17.0
Merged-chr2-50539958-4	chr2	50539455	50540455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	184930.0	NR_154590	102634280.0		NR_154590		Gm48908	-	predicted gene 48908	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11502115-4	chr2	11501650	11502650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177752)	promoter-TSS (NM_001177752)	-60.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83440467-4	chr11	83439965	83440965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172797)	TTS (NM_172797)	2771.0	NM_025492	66330.0	Mm.44800	NM_025492	ENSMUSG00000035085	1700020L24Rik	-	RIKEN cDNA 1700020L24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132302657-2	chr7	132302157	132303157	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029935, intron 1 of 7)	intron (NM_029935, intron 1 of 7)	-13007.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-65140598-2	chr6	65140098	65141098	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019455, intron 1 of 5)	Lx8|LINE|L1	4132.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58755292-4	chr15	58754788	58755788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68139.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	4.0	4.5	3.5	2.0	7.0	7.0
Merged-chr9-20976832-4	chr9	20976318	20977318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010333)	promoter-TSS (NM_010333)	-25.0	NM_010333	14739.0	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-92199629-4	chr6	92199121	92200121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030081, intron 7 of 11)	intron (NM_030081, intron 7 of 11)	15190.0	NM_030081	78287.0	Mm.290734	NM_030081	ENSMUSG00000014550	Rbsn	5330426D11Rik|Zfyve20	rabenosyn, RAB effector	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46890466-4	chr8	46889965	46890965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96422.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24426410-4	chr16	24425902	24426902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 1 of 12)	intron (NM_178665, intron 1 of 12)	-21689.0	NM_001145952	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-58508520-4	chr3	58508014	58509014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-17307.0	NM_001005509	229317.0	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	11.0	48.5	29.0	12.5	51.0	17.0
Merged-chr14-79587465-7	chr14	79586991	79587991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026474)	promoter-TSS (NM_026474)	-169.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-134692649-4	chr7	134692142	134693142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033420, intron 1 of 51)	ORR1D1|LTR|ERVL-MaLR	21955.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88636120-4	chr8	88635609	88636609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027840)	promoter-TSS (NM_027840)	19.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	100.5	203.0	189.5	40.0	97.5	88.5
Merged-chr7-28339784-1	chr7	28339284	28340284	+	1000.0	f0_balb.idr	Intergenic	B3|SINE|B2	-1065.0	NM_013676	20924.0	Mm.285906	NM_013676	ENSMUSG00000003435	Supt5	AL033283|AL033321|AU019549|Spt5|Supt5h	suppressor of Ty 5	protein-coding	24.0	21.5	20.5	24.5	21.0	20.5
Merged-chr16-38711412-4	chr16	38710915	38711915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	1620.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31218456-4	chr6	31217975	31218975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110471)	promoter-TSS (NR_110471)	-1.0	NR_110470	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-119918867-4	chr6	119918353	119919353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149727, intron 7 of 10)	intron (NR_149727, intron 7 of 10)	16155.0	NM_001166383	19365.0	Mm.149	NM_011236	ENSMUSG00000030166	Rad52	Rad52yh	RAD52 homolog, DNA repair protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84982087-4	chr15	84981575	84982575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	5896.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32091464-4	chr17	32091007	32092007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027316)	promoter-TSS (NR_027316)	-84.0	NR_027316	435518.0	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4192028-4	chr19	4191535	4192535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031868)	promoter-TSS (NM_031868)	-139.0	NM_031868	19045.0	Mm.1970	NM_031868	ENSMUSG00000040385	Ppp1ca	Ppp1c|dism2	protein phosphatase 1, catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75585145-4	chr2	75584642	75585642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74117.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22476907-4	chr8	22476406	22477406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001012667)	promoter-TSS (NM_001012667)	-27.0	NM_001146117	102032.0	Mm.378231	NM_001012667	ENSMUSG00000031534	Smim19	AI316807|BG694986|EST-c39	small integral membrane protein 19	protein-coding	29.0	54.5	45.5	20.5	72.0	48.0
Merged-chr13-44730617-4	chr13	44730119	44731119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205044)	promoter-TSS (NM_001205044)	-155.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	14.5	10.0	24.5	28.5	38.0	28.5
Merged-chr1-179803131-3	chr1	179802636	179803636	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026375, intron 1 of 35)	CpG	879.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-48800372-4	chr11	48799820	48800820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008143)	promoter-TSS (NM_008143)	-40.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29420177-4	chr19	29419679	29420679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 1 of 5)	L1MB7|LINE|L1	9260.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99979093-4	chr5	99978605	99979605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077267)	promoter-TSS (NM_001077267)	-167.0	NM_001077267	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115133983-4	chr11	115133476	115134476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145634)	promoter-TSS (NM_145634)	16.0	NM_001347648	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23984874-4	chr16	23984358	23985358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009744, intron 1 of 9)	intron (NM_009744, intron 1 of 9)	-3575.0	NM_001348026	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-106387015-3	chr4	106386506	106387506	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183225, intron 32 of 67)	L2a|LINE|L2	70793.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	1.5	7.5	0.0	3.0	6.0	2.0
Merged-chr11-50244044-4	chr11	50243564	50244564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5532.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-52653558-4	chr1	52653071	52654071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MusHAL1|LINE|L1	22866.0	NM_001142647	227094.0	Mm.83541	NM_172654	ENSMUSG00000043015	Nemp2	5330401P04Rik|9830163O08|Tmem194b	nuclear envelope integral membrane protein 2	protein-coding	7.0	6.5	10.5	13.5	33.5	9.5
Merged-chr5-107960964-4	chr5	107960502	107961502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	ORR1D2|LTR|ERVL-MaLR	26075.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	0.0	8.5	2.5	3.5	9.0	6.5
Merged-chr3-95625314-4	chr3	95624802	95625802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001026212, intron 1 of 2)	intron (NM_001026212, intron 1 of 2)	322.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34886153-4	chr18	34885658	34886658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24951.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20516970-4	chr16	20516480	20517480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347176)	promoter-TSS (NM_001347176)	-6.0	NM_001347176	13544.0	Mm.247259	NM_007889	ENSMUSG00000003233	Dvl3	b2b2866Clo	dishevelled segment polarity protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30929080-4	chr2	30928576	30929576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23925.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64402110-4	chr13	64401597	64402597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER68-int|LTR|ERVL	-30456.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	46.0	121.0	87.5	75.0	167.0	96.5
Merged-chr10-127666180-2	chr10	127665680	127666680	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045171)	promoter-TSS (NR_045171)	523.0	NM_001122895	17937.0	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78400731-4	chr17	78400245	78401245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001285946, exon 5 of 7)	exon (NM_001285946, exon 5 of 7)	17407.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-46852859-4	chr1	46852357	46853357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356416, intron 1 of 10)	CpG	761.0	NM_001356416	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88509293-4	chr17	88508803	88509803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20821.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	0.0	0.5	1.0	4.5	0.0	1.5
Merged-chr2-29869892-2	chr2	29869392	29870392	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207298, intron 1 of 11)	intron (NM_207298, intron 1 of 11)	398.0	NM_207298	99151.0	Mm.296336	NM_207298	ENSMUSG00000039787	Cercam	2600006K01Rik|AL024097|Ceecam1	cerebral endothelial cell adhesion molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84573849-4	chr10	84573349	84574349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3098.0	NM_146008	216198.0	Mm.296142	NM_146008	ENSMUSG00000020034	Tcp11l2	E430026E19Rik	t-complex 11 (mouse) like 2	protein-coding	3.5	3.5	3.0	4.0	2.0	5.0
Merged-chr10-128303304-4	chr10	128302798	128303798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252327)	promoter-TSS (NM_001252327)	-37.0	NM_133992	103135.0	Mm.244183	NM_133992	ENSMUSG00000005682	Pan2	1200014O24Rik|AI047843|AW742773|Usp52|mKIAA0710	PAN2 poly(A) specific ribonuclease subunit	protein-coding	172.0	362.5	288.5	126.5	402.0	290.5
Merged-chr6-49367742-4	chr6	49367235	49368235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172216)	promoter-TSS (NM_001172216)	-4.0	NM_001172216	231946.0	Mm.35199	NM_172727	ENSMUSG00000047115	Fam221a	D330028D13Rik	family with sequence similarity 221, member A	protein-coding	2.0	12.5	13.0	6.0	5.5	6.0
Merged-chr13-112197011-2	chr13	112196511	112197511	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91440.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-58536236-4	chr18	58535714	58536714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20026.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	15.0	37.5	43.0	48.5	77.0	53.0
Merged-chr2-30967005-4	chr2	30966506	30967506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144884, intron 2 of 4)	intron (NM_144884, intron 2 of 4)	912.0	NM_144884	30931.0	Mm.154994	NM_144884	ENSMUSG00000026849	Tor1a	DQ2|Dyt1|torsinA	torsin family 1, member A (torsin A)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108828457-4	chr6	108827939	108828939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138677)	promoter-TSS (NM_138677)	-202.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	5.0	34.5	27.5	9.0	35.5	23.5
Merged-chr3-144205384-6	chr3	144204900	144205900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010723)	promoter-TSS (NM_010723)	-145.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55479233-4	chr13	55478721	55479721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177371, intron 8 of 14)	intron (NM_001177371, intron 8 of 14)	-1445.0	NR_105909	102465569.0		NR_105909	ENSMUSG00000098341	Mir6944	Gm27710|mmu-mir-6944	microRNA 6944	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-33646970-4	chr8	33646467	33647467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-4991.0	NM_178648	108159.0	Mm.29301	NM_178648	ENSMUSG00000052906	Ubxn8	D0H8S2298E|Rep-8|Rep8h|Ubxd6	UBX domain protein 8	protein-coding	4.5	21.5	9.5	2.5	31.5	23.0
Merged-chr16-20372277-4	chr16	20371776	20372776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013790, intron 16 of 29)	intron (NM_013790, intron 16 of 29)	-46872.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132074712-4	chr4	132074187	132075187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128607, intron 1 of 17)	CpG	626.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81286797-2	chr10	81286297	81287297	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282095, intron 1 of 20)	intron (NM_001282095, intron 1 of 20)	-1016.0	NM_001282096	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-52006486-4	chr12	52006022	52007022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029545)	promoter-TSS (NM_029545)	-15.0	NM_001347404	328092.0	Mm.2821	NM_029545	ENSMUSG00000020956	Dtd2	4930578F06Rik|6530401N04Rik|B830049N13Rik	D-tyrosyl-tRNA deacylase 2	protein-coding	26.0	34.5	37.0	13.0	34.5	64.5
Merged-chr17-6794604-4	chr17	6794111	6795111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11831.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	7.0	17.0	21.5	6.5	22.0	13.5
Merged-chr6-34910823-6	chr6	34910235	34911235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013366)	promoter-TSS (NM_001013366)	96.0	NM_001013366	101240.0	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16465267-2	chr7	16464767	16465767	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008718, intron 4 of 11)	intron (NM_008718, intron 4 of 11)	11513.0	NM_008718	18142.0	Mm.145821	NM_008718	ENSMUSG00000001988	Npas1	MOP5|bHLHe11	neuronal PAS domain protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35267063-2	chr9	35266563	35267563	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028040)	promoter-TSS (NM_028040)	742.0	NM_175411	109229.0	Mm.24197	NM_175411	ENSMUSG00000050471	Fam118b	2310022O21Rik|2700018L24Rik|C030004A17Rik|Ppp4r1l	family with sequence similarity 118, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-28517418-4	chr2	28516923	28517923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009058, intron 1 of 17)	intron (NM_009058, intron 1 of 17)	4256.0	NM_001145834	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52024944-4	chr13	52024442	52025442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71799.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135078301-4	chr5	135077818	135078818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199677)	promoter-TSS (NM_001199677)	-52.0	NM_001199677	194309.0	Mm.44356	NM_177574	ENSMUSG00000043614	Vps37d	Wbscr24	vacuolar protein sorting 37D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-6155663-4	chr7	6155153	6156153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013012, intron 1 of 2)	CpG	318.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101174145-6	chr11	101173662	101174662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007721, exon 2 of 2)	exon (NM_007721, exon 2 of 2)	1281.0	NM_007721	12777.0	Mm.8021	NM_007721	ENSMUSG00000044052	Ccr10	C-C CKR-10|CC-CKR-10|CCR-10|Cmkbr9|Gpr2	chemokine (C-C motif) receptor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44073111-2	chr9	44072611	44073611	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016808, intron 1 of 12)	intron (NM_016808, intron 1 of 12)	3682.0	NM_016808	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53254670-4	chr18	53254141	53255141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	8979.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-3973814-4	chr10	3973307	3974307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 1 of 27)	CpG	732.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42270872-4	chr10	42270362	42271362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	5880.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-82829264-4	chr9	82828771	82829771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022986)	promoter-TSS (NM_022986)	-535.0	NM_022986	65099.0	Mm.41415	NM_022986	ENSMUSG00000032251	Irak1bp1	4921528N06Rik|AI851240|Aabp3|Aip70|Simpl	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-178023199-4	chr2	178022738	178023738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177400)	promoter-TSS (NM_001177400)	-46.0	NM_001177400	626848.0	Mm.422604	NM_001177399	ENSMUSG00000074519	Zfp971	Etohi1	zinc finger protein 971	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120440637-2	chr8	120440137	120441137	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48229.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90940379-4	chr2	90939878	90940878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017368)	promoter-TSS (NM_017368)	-19.0	NM_198683	13046.0	Mm.29495	NM_017368	ENSMUSG00000005506	Celf1	1600010O03Rik|AA407467|Brunol2|CUG-BP|CUG-BP1|CUGBP|Cugbp1|D2Wsu101e|HNAB50|NAB50	CUGBP, Elav-like family member 1	protein-coding	2.5	16.0	15.0	1.5	20.0	13.0
Merged-chr8-116627994-4	chr8	116627499	116628499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 1 of 6)	intron (NM_029441, intron 1 of 6)	104992.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-115042159-4	chr14	115041653	115042653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1518.0	NR_029785	723905.0		NR_029785	ENSMUSG00000065508	Mir17	Mirn17|mir-17|mmu-mir-17	microRNA 17	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98871374-4	chr13	98870751	98871751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 6 of 23)	PB1D9|SINE|Alu	19791.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51594959-4	chr11	51594463	51595463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028398, intron 8 of 12)	intron (NM_028398, intron 8 of 12)	10206.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85793387-4	chr1	85792899	85793899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133781)	promoter-TSS (NM_133781)	-42.0	NM_133781	12283.0	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38769790-4	chr16	38769289	38770289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001285793)	TTS (NM_001285793)	27530.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145246891-4	chr4	145246393	145247393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011610)	promoter-TSS (NM_011610)	-23.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80261053-2	chr12	80260553	80261553	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346669)	promoter-TSS (NM_001346669)	-672.0	NM_001346669	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110614871-4	chr7	110614326	110615326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177324)	promoter-TSS (NM_177324)	94.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79611113-4	chr11	79610611	79611611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003283, intron 2 of 2)	intron (NR_003283, intron 2 of 2)	12052.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88178191-4	chr3	88177685	88178685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045997)	promoter-TSS (NR_045997)	-400.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	19.5	56.5	43.5	13.0	52.0	41.5
Merged-chr16-87440407-4	chr16	87439910	87440910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016924, intron 1 of 4)	CpG	182.0	NM_016924	53858.0	Mm.162406	NM_016924	ENSMUSG00000041079	Rwdd2b	ORF5	RWD domain containing 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-30770716-4	chr10	30770244	30771244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 2 of 14)	intron (NM_001358842, intron 2 of 14)	32582.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	10.0	19.0	9.5	9.0	14.0	10.0
Merged-chr4-129811090-4	chr4	129810577	129811577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9402.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	96.5	187.0	193.5	106.0	227.0	162.0
Merged-chr13-12575178-4	chr13	12574674	12575674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026184, intron 2 of 15)	intron (NM_026184, intron 2 of 15)	9291.0	NM_026184	67475.0	Mm.358706	NM_026184	ENSMUSG00000057069	Ero1lb	1300013B24Rik|1700065B09Rik|AI447560|Ero1b|ero1-beta	ERO1-like beta (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71349024-2	chr8	71348524	71349524	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001142323, exon 22 of 39)	exon (NM_001142323, exon 22 of 39)	-17824.0	NM_001145780	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	3.5	0.0	0.0	0.0
Merged-chr8-70610280-4	chr8	70609769	70610769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1955.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	153.0	340.0	169.5	171.5	427.0	274.5
Merged-chr2-84715708-4	chr2	84715216	84716216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144887)	promoter-TSS (NM_144887)	-552.0	NM_144887	228136.0	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	49.0	87.5	62.5	53.5	137.5	79.5
Merged-chr16-20496810-4	chr16	20496290	20497290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2027.0	NM_172265	224045.0	Mm.233855	NM_172265	ENSMUSG00000003235	Eif2b5	C81315	eukaryotic translation initiation factor 2B, subunit 5 epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-142079902-4	chr4	142079391	142080391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-4407.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81657681-4	chr13	81657185	81658185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030257)	promoter-TSS (NM_030257)	-121.0	NM_030257	80289.0	Mm.259969	NM_030257	ENSMUSG00000035840	Lysmd3	1110030H10Rik|BC003322	LysM, putative peptidoglycan-binding, domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99188661-2	chr9	99188161	99189161	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48450.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80563919-4	chr17	80563409	80564409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033443)	promoter-TSS (NM_001033443)	-75.0	NM_001033443	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155491278-4	chr4	155490798	155491798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160017)	promoter-TSS (NM_001160017)	-63.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	195.5	514.5	380.0	189.5	535.5	350.5
Merged-chr13-41596890-4	chr13	41596405	41597405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9311.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115538841-4	chr5	115538335	115539335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	-20632.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	9.5	45.0	19.0	10.0	82.5	32.5
Merged-chr19-55803302-4	chr19	55802787	55803787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	61477.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.5	2.0	0.5	0.0	2.5	5.0
Merged-chr2-117299113-4	chr2	117298631	117299631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 5 of 16)	intron (NM_011246, intron 5 of 16)	43746.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101378078-4	chr7	101377580	101378580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040112)	promoter-TSS (NM_001040112)	-42.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78448668-2	chr9	78448168	78449168	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026658, intron 1 of 11)	CpG	458.0	NM_026658	68291.0	Mm.291779	NM_026658	ENSMUSG00000032342	Mto1	2310039H01Rik|5730419A02Rik	mitochondrial tRNA translation optimization 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-136671076-9	chr3	136670492	136671492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	CpG	926.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25682639-2	chr7	25682139	25683139	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172148, intron 1 of 2)	intron (NM_172148, intron 1 of 2)	1481.0	NM_172148	232987.0	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60737597-2	chr18	60737097	60738097	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	-4456.0	NM_001348102	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-149272674-4	chr5	149272173	149273173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308462, intron 2 of 3)	intron (NM_001308462, intron 2 of 3)	7669.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97884192-4	chr11	97883673	97884673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081435)	promoter-TSS (NM_001081435)	-19.0	NM_001081435	72973.0	Mm.245939	NM_001081435	ENSMUSG00000070336	Fbxo47	2900052P03Rik|Gm1562	F-box protein 47	protein-coding	11.0	32.0	18.0	6.0	12.5	16.5
Merged-chr4-55814985-4	chr4	55814476	55815476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-282501.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127789505-1	chr3	127789005	127790005	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_145133)	promoter-TSS (NM_145133)	-367.0	NM_145133	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	124.0	296.0	153.5	108.5	220.0	121.0
Merged-chr13-21179556-2	chr13	21179056	21180056	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009054)	promoter-TSS (NM_009054)	-375.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	4.5	12.0	9.5	2.5	4.5	24.0
Merged-chr11-115209385-4	chr11	115208880	115209880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033393, intron 8 of 9)	intron (NM_001033393, intron 8 of 9)	21893.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	19.5	23.5	20.0	9.0	17.0	8.0
Merged-chr8-57488617-4	chr8	57488107	57489107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021788)	promoter-TSS (NM_021788)	644.0	NR_126555	78353.0	Mm.426240	NR_126553	ENSMUSG00000096917	2500002B13Rik	-	RIKEN cDNA 2500002B13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90265709-4	chr3	90265226	90266226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201407)	promoter-TSS (NM_201407)	491.0	NM_001356483	229541.0	Mm.30571	NM_201407	ENSMUSG00000042404	Dennd4b	-	DENN/MADD domain containing 4B	protein-coding	21.0	105.5	45.5	28.0	79.5	52.5
Merged-chr18-75366719-4	chr18	75366235	75367235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042660)	promoter-TSS (NM_001042660)	353.0	NR_155535	102636262.0	Mm.421168	NR_155535		Gm20544	-	predicted gene 20544	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75845849-4	chr14	75845320	75846320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045294)	promoter-TSS (NR_045294)	564.0	NM_009429	22070.0	Mm.297482	NM_009429	ENSMUSG00000060126	Tpt1	TCTP|Trt|p21|p23	tumor protein, translationally-controlled 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173784563-4	chr2	173784067	173785067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019806)	TTS (NM_019806)	46996.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	7.0	0.5	4.5	0.5	0.5	0.5
Merged-chr12-73779412-4	chr12	73778897	73779897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121927.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155956456-4	chr2	155955986	155956986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001129999)	promoter-TSS (NM_001129999)	-72.0	NM_001129999	16328.0	Mm.288729	NM_008383	ENSMUSG00000038241	Cep250	AW490617|B230210E21Rik|Cep2|Inmp	centrosomal protein 250	protein-coding	13.0	39.0	18.5	16.5	7.5	16.5
Merged-chr11-100355483-4	chr11	100354951	100355951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359052, intron 1 of 12)	CpG	677.0	NM_001359052	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90131872-7	chr7	90131367	90132367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	1654.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	90.0	211.5	135.0	67.0	193.0	118.0
Merged-chr3-81051739-4	chr3	81051233	81052233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	15317.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	59.5	142.5	90.0	70.0	143.5	90.0
Merged-chr6-136465207-4	chr6	136464697	136465697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-49628.0	NM_001201390	100502936.0	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	102.5	160.5	121.5	105.0	248.0	160.5
Merged-chr8-8661365-4	chr8	8660862	8661862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010111)	promoter-TSS (NM_010111)	-589.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-18699459-8	chr8	18698965	18699965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007426, intron 5 of 8)	L3|LINE|CR1	42097.0	NM_007426	11601.0	Mm.439874	NM_007426	ENSMUSG00000031465	Angpt2	Agpt2|Ang-2|Ang2	angiopoietin 2	protein-coding	12.0	11.5	16.0	5.0	32.0	6.5
Merged-chr3-27258635-4	chr3	27258145	27259145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MuRRS-int|LTR|ERV1	-58432.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160083815-4	chr2	160083290	160084290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67137.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	47.5	110.0	41.5	50.5	89.5	53.5
Merged-chr7-35169542-4	chr7	35169036	35170036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16849.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	0.0	5.0	5.0	1.5	10.0	7.0
Merged-chr11-98952871-4	chr11	98952367	98953367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009024, intron 2 of 8)	intron (NM_009024, intron 2 of 8)	-7604.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132515657-4	chr4	132515156	132516156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5200.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	18.0	16.5	18.0	13.5	16.5	22.0
Merged-chr8-47948449-4	chr8	47947900	47948900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133791, intron 1 of 22)	intron (NM_133791, intron 1 of 22)	42151.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45005659-4	chr19	45005160	45006160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153796)	promoter-TSS (NM_153796)	-3.0	NM_001348254	226153.0	Mm.105585	NM_153796	ENSMUSG00000025209	Twnk	D19Ertd626e|PEO|Peo1|Twinl	twinkle mtDNA helicase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36234775-2	chr17	36234275	36235275	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23071.0	NM_026308	67676.0	Mm.27131	NM_026308	ENSMUSG00000024446	Rpp21	0610037N01Rik	ribonuclease P 21 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97479442-4	chr6	97478925	97479925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	LTR16A|LTR|ERVL	8395.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	294.5	742.0	473.5	354.5	715.0	515.5
Merged-chr15-77945873-4	chr15	77945395	77946395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017983, intron 7 of 8)	intron (NM_001017983, intron 7 of 8)	10827.0	NM_001168260	239554.0	Mm.295605	NM_001017983	ENSMUSG00000016552	Foxred2	A430097D04Rik|D15Bwg0759e|Gm304	FAD-dependent oxidoreductase domain containing 2	protein-coding	0.0	6.5	0.5	1.5	0.0	1.0
Merged-chr17-57247843-4	chr17	57247359	57248359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308074)	promoter-TSS (NM_001308074)	-170.0	NM_030084	78308.0	Mm.28468	NM_030084	ENSMUSG00000005823	Gpr108	1810015L19Rik|AA589464|C79132|Lustr2	G protein-coupled receptor 108	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84192199-4	chr8	84191696	84192696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13235.0	NR_029821	723819.0		NR_029821	ENSMUSG00000065483	Mir181c	Mirn181c|mir-181c	microRNA 181c	ncRNA	70.0	138.0	122.0	78.0	141.5	94.0
Merged-chr16-43380105-4	chr16	43379599	43380599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	40097.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	0.0	4.0	4.0	2.0	5.0	7.0
Merged-chr2-128745976-4	chr2	128745453	128746453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 4 of 18)	intron (NM_008587, intron 4 of 18)	47038.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	58.0	95.0	50.0	38.0	87.0	60.5
Merged-chr7-131554535-2	chr7	131554035	131555035	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145998, exon 1 of 2)	exon (NM_145998, exon 1 of 2)	473.0	NM_145998	15372.0	Mm.303357	NM_145998	ENSMUSG00000050100	Hmx2	Nkx-5.2|Nkx5-2	H6 homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4058035-2	chr19	4057535	4058535	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144869, intron 5 of 6)	intron (NM_144869, intron 5 of 6)	1412.0	NM_144869	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-10617814-4	chr18	10617318	10618318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009226)	promoter-TSS (NM_009226)	22.0	NM_009226	20641.0	Mm.603	NM_009226	ENSMUSG00000002477	Snrpd1	AA407109|AL023031|SMD1	small nuclear ribonucleoprotein D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-124714753-4	chr4	124714261	124715261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029157)	promoter-TSS (NM_029157)	-100.0	NM_029157	75062.0	Mm.25779	NM_029157	ENSMUSG00000028902	Sf3a3	4930512K19Rik|60kDa	splicing factor 3a, subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88279766-4	chr8	88279268	88280268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007406, intron 1 of 27)	intron (NM_007406, intron 1 of 27)	-3224.0	NM_001109756	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	16.0	2.5	2.0	5.0	3.0	5.0
Merged-chr11-50041252-2	chr11	50040752	50041752	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 1 of 7)	intron (NM_001290750, intron 1 of 7)	15921.0	NM_001290750	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51486457-1	chr3	51485957	51486957	+	1000.0	f1_balb.idr	intron (NM_016858, intron 1 of 1)	MTB_Mm|LTR|ERVL-MaLR	2491.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45017734-4	chr7	45017240	45018240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009101)	promoter-TSS (NM_009101)	-202.0	NM_009101	20130.0	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	6.5	12.5	8.5	3.5	32.0	6.5
Merged-chr13-104139770-4	chr13	104139261	104140261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001361054, exon 11 of 11)	exon (NM_001361054, exon 11 of 11)	30020.0	NM_144838	218544.0	Mm.44416	NM_144838	ENSMUSG00000042743	Sgtb	C630001O05Rik	small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr18-67289130-4	chr18	67288641	67289641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053261)	promoter-TSS (NM_053261)	-82.0	NM_053261	114663.0	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	0.0	1.5	9.0	0.0	0.0	1.0
Merged-chr15-78571633-4	chr15	78571117	78572117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009008, intron 1 of 6)	intron (NM_009008, intron 1 of 6)	1166.0	NM_009008	19354.0	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	Rac family small GTPase 2	protein-coding	27.0	79.5	50.5	35.0	99.0	41.5
Merged-chr15-81360476-2	chr15	81359965	81360965	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_011399, intron 1 of 8)	intron (NM_011399, intron 1 of 8)	300.0	NM_011399	20524.0	Mm.222536	NM_011399	ENSMUSG00000022404	Slc25a17	34kDa|47kDa|PMP34|Pmp47	solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75300046-4	chr10	75299543	75300543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153406, intron 13 of 15)	intron (NM_153406, intron 13 of 15)	-16834.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-103119791-3	chr4	103119295	103120295	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039081, intron 1 of 12)	CpG	405.0	NM_001039081	71148.0	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83645445-4	chr17	83644946	83645946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13551.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49000994-4	chr7	49000482	49001482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	41909.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84009466-4	chr12	84008982	84009982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012006)	promoter-TSS (NM_012006)	-20.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122575902-4	chr6	122575441	122576441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	22132.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57148275-4	chr9	57147758	57148758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357409)	promoter-TSS (NM_001357409)	47.0	NM_028347	72774.0	Mm.35749	NM_028347	ENSMUSG00000032298	Neil1	2810450N13Rik|NEH1|Nei1	nei endonuclease VIII-like 1 (E. coli)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-3355066-2	chr18	3354566	3355566	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033457, intron 1 of 1)	MTC|LTR|ERVL-MaLR	-17477.0	NM_001110852	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65545804-4	chr9	65545288	65546288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34299.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73509949-4	chr14	73509440	73510440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026119)	promoter-TSS (NM_026119)	-109.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105023551-4	chr3	105023035	105024035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 3 of 5)	intron (NM_030249, intron 3 of 5)	29418.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117481997-4	chr8	117481520	117482520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16255.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72586353-2	chr5	72585853	72586853	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001024147, exon 2 of 3)	exon (NM_001024147, exon 2 of 3)	1197.0	NM_001024147	545758.0	Mm.332426	NM_001024147	ENSMUSG00000060204	Gm5868	EG545758	predicted gene 5868	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118234813-2	chr14	118234313	118235313	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177753, exon 1 of 1)	exon (NM_177753, exon 1 of 1)	-1419.0	NR_131969	105245869.0	Mm.460408	NR_131969	ENSMUSG00000090534	LOC105245869	-	uncharacterized LOC105245869	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33371466-4	chr2	33370945	33371945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290572)	promoter-TSS (NM_001290572)	49.0	NM_001290570	241308.0	Mm.274249	NM_175211	ENSMUSG00000038831	Ralgps1	5830418G11Rik|AI853783|AI854138|RALGEF2|RALGPS1A|RalGEF 2|mKIAA0351	Ral GEF with PH domain and SH3 binding motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91710712-4	chr12	91710213	91711213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	L1Md_A|LINE|L1	75723.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138207426-3	chr5	138206925	138207925	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13111.0	NM_177878	330216.0	Mm.19719	NM_177878	ENSMUSG00000049285	Mblac1	-	metallo-beta-lactamase domain containing 1	protein-coding	3.0	1.5	0.0	0.0	0.0	0.0
Merged-chr18-78142219-4	chr18	78141715	78142715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001171011)	promoter-TSS (NM_001171011)	-96.0	NM_001171011	108052.0	Mm.33832	NM_028122	ENSMUSG00000059336	Slc14a1	2610507K20Rik|3021401A05Rik|UT-B|Utb1	solute carrier family 14 (urea transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-121075097-4	chr7	121074583	121075583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030691)	promoter-TSS (NM_030691)	-553.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56753664-4	chr18	56753163	56754163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010721)	TTS (NM_010721)	45850.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28373401-4	chr7	28372901	28373901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083912)	promoter-TSS (NM_001083912)	-739.0	NM_001083912	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49801679-4	chr16	49801188	49802188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53966.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155563518-4	chr4	155563030	155564030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159637)	promoter-TSS (NM_001159637)	-285.0	NM_001159637	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	50.5	156.0	85.5	52.0	127.5	77.0
Merged-chr2-156196761-4	chr2	156196286	156197286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172674, exon 1 of 18)	5' UTR (NM_172674, exon 1 of 18)	139.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	197.0	488.5	343.0	235.5	472.0	342.5
Merged-chr17-23828510-2	chr17	23828010	23829010	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026305, intron 2 of 3)	intron (NM_026305, intron 2 of 3)	599.0	NM_026305	67673.0	Mm.153758	NM_026305	ENSMUSG00000055839	Elob	0610040H15Rik|Tceb2	elongin B	protein-coding	8.0	3.0	11.0	9.0	2.0	4.0
Merged-chr2-153117288-4	chr2	153116753	153117753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 1 of 12)	intron (NM_001172117, intron 1 of 12)	8785.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5861049-4	chr2	5860549	5861549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016918, exon 4 of 10)	exon (NM_016918, exon 4 of 10)	1885.0	NR_152181	791411.0	Mm.442531	NR_152181		Gm13199	-	predicted gene 13199	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-99177463-4	chr4	99176974	99177974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16460.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	89.0	281.0	170.5	136.5	322.5	201.0
Merged-chr11-3129088-1	chr11	3128588	3129588	+	1000.0	f0_balb.idr	non-coding (NR_003517, exon 4 of 7)	non-coding (NR_003517, exon 4 of 7)	5067.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-12284197-4	chr14	12283688	12284688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146051)	promoter-TSS (NM_146051)	-15.0	NM_001284384	218734.0	Mm.44068	NM_146051	ENSMUSG00000033111	3830406C13Rik	-	RIKEN cDNA 3830406C13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16657101-4	chr1	16656597	16657597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037998)	promoter-TSS (NR_037998)	22.0	NM_001310470	67923.0	Mm.289248	NM_026456	ENSMUSG00000079658	Eloc	2610043E24Rik|2610301I15Rik|AA407206|AI987979|AW049146|Tceb1	elongin C	protein-coding	1.0	10.0	17.0	1.0	16.0	4.5
Merged-chr9-123529683-4	chr9	123529176	123530176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030692)	promoter-TSS (NM_030692)	-77.0	NM_001357485	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76228765-2	chr16	76228265	76229265	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106152.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167769944-4	chr2	167769444	167770444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78767.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26902954-4	chr2	26902434	26903434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009298)	promoter-TSS (NM_009298)	-47.0	NM_009298	20935.0	Mm.245577	NM_009298	ENSMUSG00000036160	Surf6	D2Wsu129e|Surf-6	surfeit gene 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-113656102-4	chr2	113655574	113656574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 13 of 16)	intron (NM_001285459, intron 13 of 16)	-29016.0	NM_001287818	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	2.0	11.5	15.0	4.0	20.5	11.0
Merged-chr8-66494595-4	chr8	66494107	66495107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8077.0	NM_001357208	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142920933-4	chr5	142920444	142921444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14190.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-118478377-4	chr5	118477887	118478887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82332.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	2.0	7.0	2.5	2.0	2.0	2.5
Merged-chr19-47068486-4	chr19	47067971	47068971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177342, intron 1 of 10)	CpG	723.0	NM_177342	226182.0	Mm.301522	NM_177342	ENSMUSG00000025049	Taf5	6330528C20Rik|AV117817	TATA-box binding protein associated factor 5	protein-coding	15.0	19.0	15.5	12.5	28.5	21.0
Merged-chr12-104186294-4	chr12	104185794	104186794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28160.0	NM_009251	20715.0	Mm.312628	NM_009251		Serpina3g	2A2|AI119734|Spi2-1|Spi2/eb.1|Spi2A|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3G	protein-coding	42.5	67.5	42.5	37.0	80.0	40.5
Merged-chr1-16161627-4	chr1	16161121	16162121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	55739.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	2.0	26.5	5.0	2.5	5.0	6.5
Merged-chr14-21848989-4	chr14	21848489	21849489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026965)	promoter-TSS (NM_026965)	-79.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr1-171554116-1	chr1	171553616	171554616	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-5077.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	0.0	0.0	9.5	0.0	3.5	0.0
Merged-chr6-120481766-2	chr6	120481266	120482266	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008359, exon 13 of 13)	exon (NM_008359, exon 13 of 13)	12041.0	NM_033567	94047.0	Mm.23088	NM_033567	ENSMUSG00000094626	Tmem121b	AW048664|Cecr6	transmembrane protein 121B	protein-coding	0.0	0.5	0.0	2.5	0.5	0.5
Merged-chr3-10338923-2	chr3	10338423	10339423	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-3267.0	NM_001010834	241877.0	Mm.442146	NM_001010834	ENSMUSG00000058921	Slc10a5	Gm405|mP5	solute carrier family 10 (sodium/bile acid cotransporter family), member 5	protein-coding	0.0	0.0	0.0	0.0	3.5	1.5
Merged-chr1-119913201-4	chr1	119912720	119913720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175106)	promoter-TSS (NM_175106)	-52.0	NM_175106	66343.0	Mm.49942	NM_175106	ENSMUSG00000036975	Tmem177	2300008B03Rik	transmembrane protein 177	protein-coding	3.0	4.0	12.0	0.0	9.5	6.5
Merged-chr6-136683850-4	chr6	136683345	136684345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER74C|LTR|ERVL	-21952.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	80.0	165.5	152.0	12.5	50.5	23.0
Merged-chr11-70803883-4	chr11	70803386	70804386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045526, intron 1 of 4)	intron (NM_001045526, intron 1 of 4)	8675.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	21.0	91.0	54.5	25.0	72.5	39.0
Merged-chr6-95718691-6	chr6	95718027	95719027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011507, intron 1 of 10)	CpG	319.0	NM_011507	20917.0	Mm.371585	NM_011507	ENSMUSG00000061838	Suclg2	AF171077|AW556404|D6Wsu120e|G-SCS|GTPSCS|SCS-betaG	succinate-Coenzyme A ligase, GDP-forming, beta subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132795350-1	chr4	132794850	132795850	+	1000.0	f0_c57.idr	intron (NM_001033308, intron 1 of 5)	intron (NM_001033308, intron 1 of 5)	1014.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156720396-2	chr1	156719896	156720896	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1486.0	NM_145413	215015.0	Mm.229107	NM_145413	ENSMUSG00000033557	Fam20b	C530043G21Rik|mKIAA0475	family with sequence similarity 20, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39451290-4	chr10	39450791	39451791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	81492.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-35869730-4	chr1	35869228	35870228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-198672.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180725250-4	chr2	180724758	180725758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183161)	promoter-TSS (NM_183161)	-81.0	NM_183161	228993.0	Mm.87189	NM_183161	ENSMUSG00000023393	Slc17a9	1700019H03Rik|BC019537|Vnut	solute carrier family 17, member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-8224082-4	chr14	8223593	8224593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027782)	TTS (NM_027782)	7845.0	NM_001305937	71393.0	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127596171-4	chr10	127595684	127596684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	24964.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	88.5	204.0	156.5	88.0	207.0	152.5
Merged-chr4-139233142-4	chr4	139232667	139233667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	39056.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	27.5	65.0	32.5	35.0	30.0	59.0
Merged-chr12-8313405-4	chr12	8312894	8313894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021429)	promoter-TSS (NM_021429)	-39.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108756125-4	chr6	108755614	108756614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-26945.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	17.5	42.5	14.5	17.0	62.5	53.5
Merged-chr4-95230646-4	chr4	95230159	95231159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-178437.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	18.0	33.0	40.5	20.0	21.0	16.5
Merged-chr1-36710098-4	chr1	36709614	36710614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146107)	promoter-TSS (NM_146107)	-189.0	NM_146107	226977.0	Mm.28521	NM_146107	ENSMUSG00000037351	Actr1b	2310066K23Rik|AA960180|AI851923|Arp1b	ARP1 actin-related protein 1B, centractin beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148493199-4	chr5	148492671	148493671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58502.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	80.0	88.0	52.0	23.0	112.0	85.5
Merged-chr5-92083837-4	chr5	92083334	92084334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080795)	promoter-TSS (NM_001080795)	-90.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141651501-4	chr4	141651006	141652006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	12609.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	39.5	68.5	62.5	50.0	116.0	97.5
Merged-chr15-75086400-4	chr15	75085894	75086894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25543.0	NM_001357693	100041546.0	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40321654-4	chr9	40321177	40322177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357622)	promoter-TSS (NM_001357622)	-354.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80313051-4	chr18	80312552	80313552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190373, intron 3 of 3)	intron (NM_001190373, intron 3 of 3)	51202.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27740366-4	chr2	27739873	27740873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 2 of 9)	intron (NM_001290481, intron 2 of 9)	29790.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131091553-2	chr1	131091053	131092053	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	6290.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0.5	0.0	0.5	4.0	3.5	9.0
Merged-chr19-10525449-8	chr19	10524958	10525958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025333)	promoter-TSS (NM_025333)	214.0	NM_172302	269061.0	Mm.490260	NM_172302	ENSMUSG00000034820	Cpsf7	5730453I16Rik|AL022757|C330017N18Rik	cleavage and polyadenylation specific factor 7	protein-coding	12.5	36.0	34.5	17.5	58.0	41.0
Merged-chr17-88109063-2	chr17	88108563	88109563	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16449.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59324015-2	chr10	59323515	59324515	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316370, intron 1 of 13)	intron (NM_001316370, intron 1 of 13)	719.0	NM_001316370	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5431234-2	chr19	5430734	5431734	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6090.0	NM_001256515	107242.0	Mm.329658	NM_134149	ENSMUSG00000047423	AI837181	Bles03|N28173	expressed sequence AI837181	protein-coding	0.0	0.0	1.0	1.5	4.0	0.0
Merged-chr16-35776693-6	chr16	35776199	35777199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152314, intron 1 of 8)	intron (NR_152314, intron 1 of 8)	6313.0	NM_175111	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	30.5	64.0	62.0	52.0	94.5	98.5
Merged-chr5-102063272-4	chr5	102062759	102063759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	6662.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-99715602-4	chr4	99715119	99716119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081264)	promoter-TSS (NM_001081264)	-11.0	NM_001081264	320438.0	Mm.32408	NM_001081264	ENSMUSG00000073792	Alg6	E230028F23Rik	asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-3447640-4	chr6	3447156	3448156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	46842.0	NM_178899	101202.0	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	9.0	1.5	1.5	4.0	1.0	1.5
Merged-chr17-35080010-4	chr17	35079512	35080512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163192)	TTS (NM_001163192)	3070.0	NM_027366	70274.0	Mm.250491	NM_027366	ENSMUSG00000013766	Ly6g6e	2310011I02Rik|G6e	lymphocyte antigen 6 complex, locus G6E	protein-coding	30.5	39.0	36.5	30.0	22.5	44.5
Merged-chr19-4282841-2	chr19	4282341	4283341	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026720, intron 1 of 14)	CpG	296.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129407102-1	chr6	129406602	129407602	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-1760.0	NM_001205363	232414.0	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-41039669-4	chr8	41039154	41040154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 5 of 13)	intron (NM_001005863, intron 5 of 13)	2277.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	52.5	128.5	108.5	28.5	70.0	54.5
Merged-chr7-101551713-4	chr7	101551201	101552201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_033804)	TTS (NR_033804)	4101.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	73.5	182.0	152.5	98.0	236.5	159.0
Merged-chr12-105981576-3	chr12	105981083	105982083	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-28680.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	0.0	24.0	7.0	2.5	1.0	0.0
Merged-chr1-165643209-4	chr1	165642700	165643700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8659.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96276635-2	chr3	96276135	96277135	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6935.0	NM_175666	319189.0	Mm.297655	NM_175666	ENSMUSG00000105827	Hist2h2bb	H2b-616	histone cluster 2, H2bb	protein-coding	22.0	8.5	3.5	23.0	3.0	3.0
Merged-chr7-111082402-5	chr7	111081926	111082926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013507, intron 1 of 21)	CpG	604.0	NM_001040131	13690.0	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79670810-4	chr15	79670308	79671308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172609)	promoter-TSS (NM_172609)	-60.0	NM_172609	223696.0	Mm.246435	NM_172609	ENSMUSG00000022427	Tomm22	2310047D01|Tom22	translocase of outer mitochondrial membrane 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-5055208-2	chr16	5054708	5055708	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001356320, exon 2 of 17)	exon (NM_001356320, exon 2 of 17)	5151.0	NM_001356320	170644.0	Mm.66356	NM_026666	ENSMUSG00000039473	Ubn1	1110029L11Rik|2610108L02Rik|AA673476|AW124741	ubinuclein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-135240582-4	chr6	135240091	135241091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080552, intron 4 of 5)	intron (NM_001080552, intron 4 of 5)	7293.0	NM_001080552	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	23.0	35.0	41.5	17.0	53.0	50.5
Merged-chr5-105053755-5	chr5	105053314	105054314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029509)	promoter-TSS (NM_029509)	-253.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	0.0	0.0	0.0	3.5	26.5	12.5
Merged-chr11-21044531-2	chr11	21044031	21045031	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-46793.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25087743-4	chr8	25087239	25088239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 2 of 11)	MIR3|SINE|MIR	14072.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45112208-4	chr2	45111707	45112707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110571)	promoter-TSS (NR_110571)	-53.0	NR_110571	433424.0	Mm.441408	NR_110571	ENSMUSG00000052248	Zeb2os	Gm13476|Zeb2nat	zinc finger E-box binding homeobox 2, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105582479-4	chr5	105581978	105582978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	63007.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-99449837-4	chr11	99449359	99450359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11706.0	NM_023256	66809.0	Mm.28042	NM_023256	ENSMUSG00000035775	Krt20	9030623C06Rik|Ck-20|Ck20|K20|Krt21	keratin 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39440354-4	chr10	39439869	39440869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	70570.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59551824-2	chr11	59551324	59552324	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145827, exon 5 of 10)	exon (NM_145827, exon 5 of 10)	9138.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63104219-4	chr14	63103700	63104700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18262.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118156309-2	chr11	118155809	118156809	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27090.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5814048-4	chr17	5813547	5814547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14557.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87448895-4	chr11	87448382	87449382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	21291.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17266498-4	chr12	17266027	17267027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027959)	promoter-TSS (NM_027959)	-68.0	NM_027959	71853.0	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	50.0	127.0	110.5	60.0	114.5	152.5
Merged-chr2-157447327-3	chr2	157446835	157447835	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 2 of 13)	L1M4|LINE|L1	23042.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	6.0	6.0	10.0	5.0	7.0	17.0
Merged-chr2-114139221-3	chr2	114138723	114139723	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290788, intron 16 of 33)	intron (NM_001290788, intron 16 of 33)	11347.0	NR_105968	102465982.0		NR_105968	ENSMUSG00000098464	Mir7002	Gm27429|mmu-mir-7002	microRNA 7002	ncRNA	0.0	9.0	0.5	36.5	58.0	22.5
Merged-chr18-24121728-7	chr18	24121215	24122215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172625, exon 1 of 5)	exon (NM_172625, exon 1 of 5)	104.0	NM_172625	225280.0	Mm.258973	NM_172625	ENSMUSG00000047989	Ino80c	D030070L09Rik	INO80 complex subunit C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-82874359-4	chr8	82873847	82874847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 1 of 6)	ORR1D2|LTR|ERVL-MaLR	10991.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	28.5	90.0	33.0	17.5	53.0	30.0
Merged-chr7-43464957-2	chr7	43464457	43465457	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001290316, exon 3 of 10)	exon (NM_001290316, exon 3 of 10)	1724.0	NM_001290316	75690.0	Mm.30200	NM_001290316	ENSMUSG00000070604	Vsig10l	-	V-set and immunoglobulin domain containing 10 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-32184741-4	chr6	32184228	32185228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 22 of 31)	intron (NM_175750, intron 22 of 31)	134440.0	NM_029587	76382.0	Mm.23510	NM_029587	ENSMUSG00000029766	1700012A03Rik	AI429084	RIKEN cDNA 1700012A03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-192770682-4	chr1	192770201	192771201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 1 of 11)	CpG	518.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	28.0	24.5	44.0	13.0	29.0	16.0
Merged-chr2-69135756-4	chr2	69135254	69136254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181547)	promoter-TSS (NM_181547)	-46.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92921021-4	chr1	92920427	92921427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_181405)	TTS (NM_181405)	10102.0	NM_181405	108657.0	Mm.200971	NM_181405	ENSMUSG00000026269	Rnpepl1	1110014H17Rik|AI894167	arginyl aminopeptidase (aminopeptidase B)-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-18670741-4	chr19	18670249	18671249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026120)	promoter-TSS (NM_026120)	-31.0	NM_026120	67383.0	Mm.306602	NM_026120	ENSMUSG00000024726	Carnmt1	2410127L17Rik	carnosine N-methyltransferase 1	protein-coding	24.5	32.0	38.0	27.0	40.0	44.5
Merged-chr13-101909196-4	chr13	101908711	101909711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140994.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63448055-4	chr14	63447522	63448522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177628, intron 2 of 3)	intron (NM_177628, intron 2 of 3)	11628.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9038528-4	chr3	9038027	9039027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23437.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	28.0	24.0	19.0	6.5	9.0	8.0
Merged-chr18-36720110-4	chr18	36719597	36720597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6718.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	9.5	13.5	16.5	22.0	27.0	30.5
Merged-chr8-123805989-3	chr8	123805482	123806482	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009003)	promoter-TSS (NM_009003)	-14.0	NM_009003	19341.0	Mm.9221	NM_009003	ENSMUSG00000019478	Rab4a	AI848268|Rab4	RAB4A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	8.5	4.0
Merged-chr11-121451903-4	chr11	121451399	121452399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029878)	promoter-TSS (NM_029878)	-50.0	NM_029878	108903.0	Mm.23686	NM_029878	ENSMUSG00000039230	Tbcd	2310057L06Rik|A030005L14Rik|mKIAA0988	tubulin-specific chaperone d	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-33132068-4	chr12	33131528	33132528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015602, intron 4 of 5)	intron (NR_015602, intron 4 of 5)	15558.0	NR_015602	320046.0	Mm.208337	NR_015602	ENSMUSG00000052125	F730043M19Rik	-	RIKEN cDNA F730043M19 gene	ncRNA	25.5	23.0	15.0	13.5	15.0	9.0
Merged-chr17-33951483-4	chr17	33950941	33951941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019420)	promoter-TSS (NM_019420)	47.0	NM_019420	54218.0	Mm.11132	NM_019420	ENSMUSG00000067370	B3galt4	Gal-T2|Galt2	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4	protein-coding	41.0	60.0	52.0	34.0	54.0	48.5
Merged-chr9-66620932-4	chr9	66620434	66621434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27819.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173913064-4	chr1	173912547	173913547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301745)	promoter-TSS (NM_001301745)	-1.0	NM_001033450	381308.0	Mm.490248	NM_001033450	ENSMUSG00000026536	Ifi211	A730048F03|Ifi205b|Mnda|ifi-205-B	interferon activated gene 211	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-53809632-4	chr5	53809132	53810132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144517)	promoter-TSS (NM_144517)	5.0	NM_144517	67249.0	Mm.28823	NM_144517	ENSMUSG00000039178	Tbc1d19	2810453K03Rik	TBC1 domain family, member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80647574-4	chr7	80647089	80648089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173863, intron 2 of 14)	intron (NM_173863, intron 2 of 14)	11572.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	8.0	3.5	4.0	8.5	5.0	10.5
Merged-chr19-16252896-4	chr19	16252411	16253411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 2 of 6)	intron (NM_008139, intron 2 of 6)	62093.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12440461-4	chr19	12439935	12440935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12530.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	158.0	249.5	244.5	100.0	302.0	246.0
Merged-chr1-176813579-4	chr1	176813133	176814133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1027.0	NR_151682	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	36.5	65.0	47.5	24.5	101.5	71.5
Merged-chr13-76018700-4	chr13	76018247	76019247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178916)	promoter-TSS (NM_178916)	-35.0	NM_001131069	218341.0	Mm.266515	NM_178916	ENSMUSG00000043190	Rfesd	AI256775|D030068K09	Rieske (Fe-S) domain containing	protein-coding	258.0	432.5	321.0	89.5	167.0	120.5
Merged-chr15-38302417-4	chr15	38301921	38302921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1710.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44539136-4	chr10	44538595	44539595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80347.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-144943499-4	chr7	144943010	144944010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3585.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	3.0	7.5	1.5	0.0	6.5	3.5
Merged-chr18-7869872-4	chr18	7869359	7870359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001360956, exon 1 of 14)	5' UTR (NM_001360956, exon 1 of 14)	146.0	NM_001360956	225131.0	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	10.0	58.5	42.5	10.0	61.0	43.0
Merged-chr4-156203141-4	chr4	156202643	156203643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030671)	promoter-TSS (NR_030671)	-141.0	NR_030671	100382.0	Mm.461024	NR_030671		AW011738	-	expressed sequence AW011738	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66375033-4	chr9	66374550	66375550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145617, intron 2 of 77)	intron (NM_145617, intron 2 of 77)	24600.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27584703-4	chr3	27584196	27585196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_037275)	TTS (NR_037275)	299.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36274051-2	chr1	36273551	36274551	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153408)	promoter-TSS (NM_153408)	-626.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77662906-4	chr10	77662418	77663418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	21694.0	NR_035451	100316811.0		NR_035451	ENSMUSG00000089424	Mir1930	mir-1930|mmu-mir-1930	microRNA 1930	ncRNA	2.0	0.0	2.0	4.0	1.0	3.5
Merged-chr9-102521540-4	chr9	102521050	102522050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024291, intron 4 of 10)	ORR1E|LTR|ERVL-MaLR	15412.0	NM_024291	16716.0	Mm.101692	NM_024291	ENSMUSG00000035606	Ky	CD1|D9Mgc44e|ky	kyphoscoliosis peptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22814117-4	chr11	22813638	22814638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45597.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64342354-4	chr5	64341863	64342863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 17 of 18)	intron (NM_001289514, intron 17 of 18)	112006.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	152.5	368.5	237.5	94.5	220.0	165.5
Merged-chr2-30687043-2	chr2	30686543	30687543	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9032.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-100452678-4	chr9	100452166	100453166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33807.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	21.0	32.0	42.5	21.0	48.5	63.5
Merged-chr19-24284391-4	chr19	24283902	24284902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-3816.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	4.0	6.5	12.5	0.0	2.0	2.5
Merged-chr8-84237244-4	chr8	84236745	84237745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172503)	promoter-TSS (NM_172503)	-203.0	NM_172503	212168.0	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	57.5	167.0	150.5	81.0	232.5	128.5
Merged-chr5-115272906-4	chr5	115272400	115273400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016698)	promoter-TSS (NM_016698)	-5.0	NM_001302449	50849.0	Mm.30051	NM_016698	ENSMUSG00000041740	Rnf10	AA675014|RIE2|mKIAA0262	ring finger protein 10	protein-coding	50.0	140.5	132.5	46.0	140.5	134.5
Merged-chr8-31150275-4	chr8	31149768	31150768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199988)	promoter-TSS (NM_001199988)	-48.0	NM_144927	234138.0	Mm.349800	NM_144927	ENSMUSG00000031577	Tti2	-	TELO2 interacting protein 2	protein-coding	126.5	439.0	387.0	204.5	308.0	312.5
Merged-chr5-122710225-2	chr5	122709725	122710725	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310718, intron 1 of 10)	ID_B1|SINE|B4	2681.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	8.5	1.5	16.0	9.0	13.0	10.5
Merged-chr1-181232470-4	chr1	181231959	181232959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20481.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-108460779-4	chr4	108460261	108461261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175472, intron 2 of 30)	CpG	1335.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	10.0	32.5	13.0	12.5	30.5	24.0
Merged-chr15-98484693-4	chr15	98484195	98485195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2012.0	NM_010679	16770.0	Mm.5074	NM_010679	ENSMUSG00000022991	Lalba	AW208827|Lyzg	lactalbumin, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-6491114-1	chr18	6490614	6491614	+	1000.0	f0_balb.idr	promoter-TSS (NM_001276350)	promoter-TSS (NM_001276350)	-257.0	NM_001276350	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	3.5	23.5	17.0	20.5	15.5	10.0
Merged-chr5-34534085-4	chr5	34533580	34534580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	8296.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-64330625-4	chr14	64330126	64331126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253715, intron 1 of 4)	L1MD|LINE|L1	86330.0	NM_001253716	110265.0	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38376152-2	chr2	38375652	38376652	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24844.0	NM_010710	16870.0	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36446429-7	chr1	36445934	36446934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11B|LTR|ERVK	-1163.0	NM_001310517	214895.0	Mm.287854	NM_001013374	ENSMUSG00000001143	Lman2l	A630028F14Rik|VIP36-like|VIPL	lectin, mannose-binding 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77929033-4	chr15	77928515	77929515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019913)	promoter-TSS (NM_019913)	-21.0	NM_019913	56551.0	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99377645-4	chr7	99377147	99378147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-3871.0	NM_001362168	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77687384-6	chr11	77686867	77687867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024205, intron 1 of 3)	CpG	1228.0	NM_001024205	68564.0	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89727246-4	chr3	89726756	89727756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357958, intron 1 of 14)	intron (NM_001357958, intron 1 of 14)	-3462.0	NM_001146296	56417.0	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|DRADA|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106149185-4	chr8	106148666	106149666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1188.0	NM_133792	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-19784655-4	chr8	19784194	19785194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270553, intron 6 of 9)	CpG	55118.0	NM_001039553	626415.0	Mm.425517	NM_001039553	ENSMUSG00000096265	4930467E23Rik	TSAP	RIKEN cDNA 4930467E23 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-36834768-4	chr19	36834276	36835276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163635, intron 1 of 26)	CpG	544.0	NM_001163635	74493.0	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-49319209-4	chr6	49318717	49319717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175098)	promoter-TSS (NM_175098)	-57.0	NM_175098	57895.0	Mm.32416	NM_175098	ENSMUSG00000050786	Ccdc126	6330407D12Rik|AA675040|AI465320|AL022711	coiled-coil domain containing 126	protein-coding	18.5	36.5	35.5	11.5	54.0	45.5
Merged-chr5-64337279-3	chr5	64336776	64337776	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 16 of 18)	intron (NM_001289514, intron 16 of 18)	106919.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	68.0	145.5	111.5	49.5	108.5	84.0
Merged-chr4-139312897-2	chr4	139312397	139313397	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025337, intron 1 of 6)	B2_Mm2|SINE|B2	2153.0	NM_025337	110198.0	Mm.482154	NM_025337	ENSMUSG00000028743	Akr7a5	0610025K21Rik|Afar|Afar1|Akr7a2	aldo-keto reductase family 7, member A5 (aflatoxin aldehyde reductase)	protein-coding	0.0	0.0	0.0	2.0	0.0	0.0
Merged-chr7-34189562-4	chr7	34189065	34190065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026549, intron 4 of 6)	intron (NM_026549, intron 4 of 6)	7105.0	NM_026549	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	4.5	11.0	17.0	6.5	9.5	17.5
Merged-chr3-79567390-4	chr3	79566908	79567908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152118)	promoter-TSS (NR_152118)	271.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122293186-4	chr3	122292697	122293697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_030439)	TTS (NR_030439)	506.0	NR_030439	791077.0		NR_030439	ENSMUSG00000076456	Mir760	Mirn760|mir-760|mmu-mir-760	microRNA 760	ncRNA	8.5	5.5	10.0	5.5	8.5	4.5
Merged-chr5-77095220-4	chr5	77094717	77095717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159901)	promoter-TSS (NM_001159901)	50.0	NM_001159901	74318.0	Mm.181852	NM_175606	ENSMUSG00000059325	Hopx	1110018K11Rik|1200015P04Rik|2300002F06Rik|AI848177|AW490897|Cameo|Hdop|Hod|Hop|Ob1|Obl|Toto	HOP homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111538066-4	chr12	111537576	111538576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173363)	promoter-TSS (NM_173363)	-25.0	NM_178041	217869.0	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-77435203-4	chr8	77434712	77435712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 3 of 22)	intron (NM_030113, intron 3 of 22)	-81844.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83078481-6	chr6	83077993	83078993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197992, intron 1 of 8)	CpG	103.0	NM_197992	69837.0	Mm.12261	NM_197992	ENSMUSG00000069678	Pcgf1	2010002K04Rik|AU024121|Nspc1	polycomb group ring finger 1	protein-coding	13.5	33.0	28.5	39.0	35.5	28.5
Merged-chr1-13589400-4	chr1	13588897	13589897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028173, intron 1 of 10)	CpG	513.0	NM_028173	72265.0	Mm.28765	NM_028173	ENSMUSG00000025935	Tram1	1810049E02Rik|TRAMP	translocating chain-associating membrane protein 1	protein-coding	18.5	50.0	75.0	21.0	66.5	48.5
Merged-chr10-62340326-4	chr10	62339835	62340835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038038)	promoter-TSS (NR_038038)	86.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-116943395-4	chr8	116942907	116943907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177700)	promoter-TSS (NM_177700)	14.0	NM_177700	234776.0	Mm.259736	NM_177700	ENSMUSG00000047388	Atmin	Asciz|gpg6|mKIAA0431	ATM interactor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-98025698-4	chr3	98025190	98026190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	12152.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136876206-1	chr4	136875706	136876706	+	1000.0	f1_c57bl6.idr	Intergenic	B3|SINE|B2	9971.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	20.5	7.5	3.0	3.0	9.0	3.0
Merged-chr5-137046149-4	chr5	137045635	137046635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007457)	promoter-TSS (NM_007457)	-27.0	NM_007457	11769.0	Mm.833	NM_007457	ENSMUSG00000004849	Ap1s1	AP19	adaptor protein complex AP-1, sigma 1	protein-coding	4.0	2.5	1.5	0.0	6.5	8.0
Merged-chr4-139166416-4	chr4	139165923	139166923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	14232.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	54.0	204.0	117.0	87.0	217.5	169.0
Merged-chr12-79131603-2	chr12	79131103	79132103	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009705, intron 1 of 7)	intron (NM_009705, intron 1 of 7)	815.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	31.5	95.0	74.5	50.5	162.5	129.0
Merged-chr12-77060218-4	chr12	77059730	77060730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97982.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-41207630-4	chr9	41207119	41208119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040392, intron 1 of 4)	intron (NR_040392, intron 1 of 4)	1464.0	NR_040392	78500.0	Mm.275715	NR_040392	ENSMUSG00000100837	1700063D05Rik	-	RIKEN cDNA 1700063D05 gene	ncRNA	89.5	305.5	187.0	77.5	202.5	128.0
Merged-chr10-19044070-4	chr10	19043584	19044584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR16|LTR|ERVK	-28674.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	8.0	19.0	11.5	6.5	12.0	6.0
Merged-chr2-73541048-4	chr2	73540533	73541533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11546.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75737409-4	chr2	75736889	75737889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32726.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0.5	9.0	11.0	25.5	18.0	8.0
Merged-chr1-24686425-4	chr1	24685938	24686938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026719, intron 2 of 15)	MIR|SINE|MIR	7520.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	11.5	17.5	17.5	16.5	52.5	27.0
Merged-chr9-118557054-3	chr9	118556561	118557561	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_018748, exon 15 of 24)	exon (NM_018748, exon 15 of 24)	-49648.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-133310552-3	chr3	133310059	133311059	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293641, intron 1 of 11)	CpG	449.0	NM_001293641	74776.0	Mm.210305	NM_146141	ENSMUSG00000028013	Ppa2	1110013G13Rik|Sid6306	pyrophosphatase (inorganic) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-33265442-4	chr4	33264890	33265890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	-16603.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	4.0	21.5	12.5	9.5	15.0	24.0
Merged-chr11-98954734-4	chr11	98954240	98955240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009024, intron 2 of 8)	intron (NM_009024, intron 2 of 8)	-5731.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83527415-4	chr17	83526916	83527916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13083.0	NM_001159529	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-123510739-1	chr3	123510239	123511239	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-2403.0	NR_028574	69895.0	Mm.260791	NR_028574	ENSMUSG00000104960	Snhg8	1110065M07Rik|2010109N14Rik	small nucleolar RNA host gene 8	ncRNA	9.0	0.0	1.0	12.0	5.0	1.5
Merged-chr17-33555597-6	chr17	33555092	33556092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053214)	promoter-TSS (NM_053214)	-115.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	15.0	20.5	14.5	15.0	24.5	30.0
Merged-chr17-10841018-4	chr17	10840511	10841511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027032)	promoter-TSS (NM_027032)	652.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99563853-4	chr9	99563346	99564346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028768, intron 1 of 21)	intron (NM_028768, intron 1 of 21)	5053.0	NM_001166138	74125.0	Mm.234823	NM_028768	ENSMUSG00000032468	Armc8	1200015K23Rik|Gid5|HSPC056	armadillo repeat containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81829552-4	chr7	81829042	81830042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146193)	promoter-TSS (NM_146193)	-111.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	20.0	73.0	37.0	17.0	71.0	75.5
Merged-chr2-22589755-4	chr2	22589263	22590263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32564.0	NM_008078	14417.0	Mm.4784	NM_008078	ENSMUSG00000026787	Gad2	6330404F12Rik|GAD(65)|GAD65|Gad-2	glutamic acid decarboxylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-47353127-4	chr4	47352627	47353627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009370)	promoter-TSS (NM_009370)	-95.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39017880-2	chr18	39017380	39018380	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 1 of 21)	intron (NM_001361073, intron 1 of 21)	24735.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-64726501-4	chr8	64725976	64726976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025436, intron 2 of 5)	intron (NM_025436, intron 2 of 5)	7102.0	NM_025436	66234.0	Mm.30119	NM_025436	ENSMUSG00000031604	Msmo1	1500001G16Rik|C78600|DESP4|ERG25|Sc4mol	methylsterol monoxygenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101761874-4	chr13	101761389	101762389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 1 of 15)	intron (NM_001077495, intron 1 of 15)	6328.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27192444-4	chr3	27191944	27192944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	9440.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130816114-4	chr4	130815615	130816615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	23578.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9004554-4	chr3	9003986	9004986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357072)	promoter-TSS (NM_001357072)	237.0	NM_009412	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	87.5	221.0	155.5	106.0	198.0	140.0
Merged-chr19-36928555-2	chr19	36928055	36929055	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080706, intron 1 of 37)	intron (NM_001080706, intron 1 of 37)	2476.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-48838603-4	chr11	48838081	48839081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347446, intron 1 of 6)	intron (NM_001347446, intron 1 of 6)	1110.0	NM_001347446	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38418872-4	chr18	38418398	38419398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022996)	promoter-TSS (NM_022996)	-9.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-69861591-4	chr2	69861101	69862101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355265)	promoter-TSS (NM_001355265)	39.0	NM_009278	20823.0	Mm.10508	NM_009278	ENSMUSG00000068882	Ssb	SS-B	Sjogren syndrome antigen B	protein-coding	70.0	126.0	117.0	74.5	139.5	102.0
Merged-chr7-128611202-4	chr7	128610714	128611714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178641)	promoter-TSS (NM_178641)	-151.0	NM_178641	101490.0	Mm.490344	NM_178641	ENSMUSG00000042105	Inpp5f	5830435P03Rik|AI115354|AW561896|SAC2|cI-27|hSAC2|mKIAA0966	inositol polyphosphate-5-phosphatase F	protein-coding	0.0	5.5	1.5	8.0	9.5	2.0
Merged-chr19-6046963-4	chr19	6046450	6047450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164709)	promoter-TSS (NM_001164709)	-195.0	NM_001164709	74126.0	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	16.5	90.0	75.0	26.0	135.0	62.0
Merged-chr6-147476172-6	chr6	147475675	147476675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355713)	promoter-TSS (NM_001355713)	-190.0	NM_001355713	67015.0	Mm.209774	NM_025911	ENSMUSG00000030301	Ccdc91	1700086G08Rik|1810060J02Rik|AU045683|AW555238|p56	coiled-coil domain containing 91	protein-coding	58.0	99.5	100.0	74.5	130.0	117.0
Merged-chr4-152325770-4	chr4	152325273	152326273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102292)	promoter-TSS (NR_102292)	47.0	NR_102291	19934.0	Mm.307846	NM_009079	ENSMUSG00000028936	Rpl22	2700038K18Rik	ribosomal protein L22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17516406-2	chr17	17515906	17516906	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108083.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	0.0	5.0	1.0	3.0	0.0	0.0
Merged-chr6-97829330-5	chr6	97828871	97829871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	22313.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	79.0	87.5	130.0	92.0	119.0	96.0
Merged-chr3-37418409-2	chr3	37417909	37418909	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153561, intron 1 of 4)	intron (NM_153561, intron 1 of 4)	1187.0	NM_001291044	229228.0	Mm.436967	NM_153561	ENSMUSG00000050174	Nudt6	Asfgf2b	nudix (nucleoside diphosphate linked moiety X)-type motif 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69109273-2	chr11	69108773	69109773	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011065, exon 23 of 23)	exon (NM_011065, exon 23 of 23)	9121.0	NM_001159367	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	3.5	0.0	9.0	4.5	0.0	9.5
Merged-chr1-171631675-4	chr1	171631155	171632155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_144539)	TTS (NM_144539)	10245.0	NR_106151	102465784.0		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	31.5	69.0	55.0	45.0	80.5	42.5
Merged-chr1-144004245-4	chr1	144003751	144004751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009061)	promoter-TSS (NM_009061)	-102.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75683095-4	chr2	75682580	75683580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010902, intron 1 of 4)	intron (NM_010902, intron 1 of 4)	21583.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	41.0	41.0	43.5	40.0	48.5	36.5
Merged-chr14-55106595-4	chr14	55106064	55107064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303502)	promoter-TSS (NM_001303502)	29.0	NM_001303502	11766.0	Mm.238879	NM_007455	ENSMUSG00000040701	Ap1g2	Adtg2|G2ad	adaptor protein complex AP-1, gamma 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124755446-4	chr2	124754948	124755948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	101867.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134045172-4	chr6	134044695	134045695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	9495.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	26.0	113.0	42.5	50.5	72.5	41.5
Merged-chr6-83636586-4	chr6	83636093	83637093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19523.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	54.5	127.5	102.0	49.0	119.0	85.0
Merged-chr3-65873287-4	chr3	65872765	65873765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	84984.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	3.5	4.5	2.0	1.0	9.5	4.0
Merged-chr8-34146740-4	chr8	34146258	34147258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026609)	promoter-TSS (NM_026609)	-19.0	NM_026609	68192.0	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	71.5	287.5	231.0	133.0	266.5	249.0
Merged-chr1-191312796-4	chr1	191312316	191313316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025424, intron 1 of 3)	intron (NM_025424, intron 1 of 3)	5302.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	48.0	150.0	112.5	79.0	114.0	120.5
Merged-chr17-67474142-4	chr17	67473652	67474652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119661.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.5	8.0	7.5	0.0	2.0	3.5
Merged-chr11-30649227-4	chr11	30648732	30649732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029344, intron 1 of 3)	CpG	164.0	NM_029344	75572.0	Mm.390319	NM_029344	ENSMUSG00000060923	Acyp2	2310004B09Rik	acylphosphatase 2, muscle type	protein-coding	79.0	101.5	97.0	43.5	43.0	70.5
Merged-chr16-18811721-4	chr16	18811214	18812214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028403)	promoter-TSS (NR_028403)	258.0	NM_001161623	12544.0	Mm.1248	NM_009862	ENSMUSG00000000028	Cdc45	Cdc45l	cell division cycle 45	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180811827-4	chr1	180811323	180812323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008210, exon 2 of 4)	exon (NM_008210, exon 2 of 4)	1782.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41342314-2	chr19	41341814	41342814	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	42756.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120539530-4	chr8	120539032	120540032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_106159)	TTS (NR_106159)	836.0	NR_106159	102466849.0		NR_106159	ENSMUSG00000098280	Mir7687	Gm27573|mmu-mir-7687	microRNA 7687	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-24990251-4	chr15	24989763	24990763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	423501.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128313305-2	chr7	128312805	128313805	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-15174.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-35693215-4	chr3	35692709	35693709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-27046.0	NR_040748	625963.0	Mm.251506	NR_040748	ENSMUSG00000105662	Gm6639	-	predicted gene 6639	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128687375-4	chr2	128686868	128687868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008569)	promoter-TSS (NM_008569)	27.0	NM_008569	17222.0	Mm.277408	NM_008569	ENSMUSG00000014355	Anapc1	2610021O03Rik|AI047775|AI853536|AW547281|Apc1|Mcpr|tsg24	anaphase promoting complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111810010-4	chr12	111809510	111810510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028875, intron 3 of 7)	intron (NM_028875, intron 3 of 7)	3869.0	NM_028875	74335.0	Mm.19082	NM_028875	ENSMUSG00000021287	Xrcc3	-	X-ray repair complementing defective repair in Chinese hamster cells 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132008385-4	chr4	132007877	132008877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	40701.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108448254-3	chr6	108447775	108448775	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-41468.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	53.5	102.0	63.0	54.0	133.5	85.0
Merged-chr11-120581131-4	chr11	120580626	120581626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133796, intron 1 of 5)	CpG	494.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	40.5	126.5	116.5	34.5	85.5	131.5
Merged-chr6-53708082-4	chr6	53707563	53708563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112762.0	NM_025817	66873.0	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	2.0	0.0	0.0	2.5	0.5	0.0
Merged-chr7-31002844-4	chr7	31002343	31003343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20922.0	NM_001242647	76415.0	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-25053084-4	chr16	25052595	25053595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6544.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49197690-2	chr13	49197190	49198190	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	10143.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64179320-4	chr9	64178813	64179813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183316)	promoter-TSS (NM_183316)	16.0	NM_183316	330959.0	Mm.24082	NM_183316	ENSMUSG00000032398	Snapc5	2010103A03Rik	small nuclear RNA activating complex, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-142611342-4	chr2	142610841	142611841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR50|LTR|ERVL	290123.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22225732-4	chr9	22225249	22226249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172763)	promoter-TSS (NM_172763)	37.0	NM_001164624	235047.0	Mm.290849	NM_172763	ENSMUSG00000057982	Zfp809	BB114266|C330026E23	zinc finger protein 809	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59265817-4	chr10	59265318	59266318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43896.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-40934621-4	chr17	40934120	40935120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008650)	promoter-TSS (NM_008650)	-65.0	NM_008650	17850.0	Mm.259884	NM_008650	ENSMUSG00000023921	Mut	D230010K02Rik|Mcm	methylmalonyl-Coenzyme A mutase	protein-coding	151.0	311.0	219.0	84.0	248.0	191.5
Merged-chr13-56613711-4	chr13	56613225	56614225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155548, intron 1 of 16)	intron (NR_155548, intron 1 of 16)	4139.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	6.0	9.5	17.0	1.5	13.0	15.5
Merged-chr4-115057083-4	chr4	115056573	115057573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287388)	promoter-TSS (NM_001287388)	647.0	NM_011527	21349.0	Mm.239869	NM_011527	ENSMUSG00000028717	Tal1	Hpt|SCL/tal-1|Scl|bHLHa17|tal-1	T cell acute lymphocytic leukemia 1	protein-coding	0.0	2.0	4.5	1.0	8.5	0.0
Merged-chr5-99232681-2	chr5	99232181	99233181	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 6 of 13)	MTE2a|LTR|ERVL-MaLR	20246.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-37109415-2	chr16	37108915	37109915	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001114611, exon 26 of 26)	3' UTR (NM_001114611, exon 26 of 26)	97629.0	NM_001159369	77782.0	Mm.259114	NM_029977	ENSMUSG00000034206	Polq	A430110D14Rik	polymerase (DNA directed), theta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112630675-2	chr12	112630175	112631175	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 2 of 12)	intron (NM_007421, intron 2 of 12)	10628.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117379479-2	chr8	117378979	117379979	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 2 of 20)	intron (NM_028941, intron 2 of 20)	30309.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120840481-2	chr7	120839981	120840981	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2350.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139409602-4	chr5	139409072	139410072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177000, intron 1 of 1)	intron (NM_177000, intron 1 of 1)	3185.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61147672-4	chr10	61147177	61148177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316674)	promoter-TSS (NM_001316674)	7.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5038857-4	chr19	5038362	5039362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175383)	promoter-TSS (NM_175383)	36.0	NM_175383	108902.0	Mm.29628	NM_175383	ENSMUSG00000047379	B4gat1	1500032M01Rik|B3gnt1|B3gnt6|BETA3GNT1|iGAT|iGNT	beta-1,4-glucuronyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102441722-4	chr7	102441222	102442222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009103)	promoter-TSS (NM_009103)	27.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	25.5	42.5	34.0	28.5	40.0	32.5
Merged-chr15-62056606-4	chr15	62056102	62057102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	17345.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-30786728-4	chr11	30786231	30787231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134013, intron 1 of 46)	intron (NM_134013, intron 1 of 46)	14956.0	NM_134013	103554.0	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	23.5	43.0	33.0	13.5	34.0	43.0
Merged-chr8-107293962-2	chr8	107293453	107294453	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001286260, intron 1 of 12)	CpG	483.0	NM_133957	54446.0	Mm.390057	NM_018823	ENSMUSG00000003847	Nfat5	AI225870|B130038B15Rik|CAG-8|CAG80|NFATL1|OREBP|TonEBP|mKIAA0827|nfatz	nuclear factor of activated T cells 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14192236-4	chr2	14191743	14192743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081310, intron 1 of 3)	intron (NM_001081310, intron 1 of 3)	17719.0	NM_001081310	625286.0	Mm.158781	NM_001081310	ENSMUSG00000061531	Tmem236	2010003H20Rik|Fam23a|Gm613	transmembrane protein 236	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69991560-4	chr11	69991073	69992073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026017)	TTS (NM_026017)	203.0	NM_019749	56486.0	Mm.272460	NM_019749	ENSMUSG00000018567	Gabarap	-	gamma-aminobutyric acid receptor associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21737732-4	chr19	21737240	21738240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40600.0	NM_001033759	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129033731-3	chr4	129033220	129034220	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24551.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4555427-4	chr2	4554917	4555917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 11 of 23)	intron (NM_001177843, intron 11 of 23)	-4337.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5572934-4	chr19	5572455	5573455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4931.0	NM_001033448	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44658437-4	chr10	44657947	44658947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-199699.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	4.0	14.0	24.5	7.0	30.0	13.0
Merged-chr18-42275282-4	chr18	42274790	42275790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033452)	promoter-TSS (NR_033452)	-63.0	NM_172626	225432.0	Mm.329400	NM_172626	ENSMUSG00000024491	Rbm27	A730010I06|AI043120|Psc1|mKIAA1311	RNA binding motif protein 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95790113-2	chr15	95789613	95790613	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253813)	promoter-TSS (NM_001253813)	-730.0	NM_175344	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24151997-2	chr17	24151497	24152497	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1075.0	NM_001286662	18607.0	Mm.10504	NM_011062	ENSMUSG00000024122	Pdpk1	Pdk1	3-phosphoinositide dependent protein kinase 1	protein-coding	0.0	1.0	0.0	0.0	0.0	1.5
Merged-chr7-45053379-4	chr7	45052830	45053830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175022)	promoter-TSS (NM_175022)	-449.0	NM_175022	233210.0	Mm.219137	NM_175022	ENSMUSG00000046574	Prr12	6720469B10|BC058674	proline rich 12	protein-coding	10.5	10.0	9.5	17.0	8.0	10.0
Merged-chr3-108018011-4	chr3	108017515	108018515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010358)	promoter-TSS (NM_010358)	-42.0	NM_010358	14862.0	Mm.37199	NM_010358	ENSMUSG00000058135	Gstm1	Gstb-1|Gstb1	glutathione S-transferase, mu 1	protein-coding	38.0	25.0	34.0	29.5	31.0	33.0
Merged-chr18-62047184-4	chr18	62046681	62047681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94106.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	71.5	159.5	113.0	77.0	162.5	107.5
Merged-chr4-46558882-4	chr4	46558368	46559368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 2 of 11)	intron (NM_001164804, intron 2 of 11)	7572.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	99.5	201.5	157.0	91.0	259.0	173.0
Merged-chr11-104382095-4	chr11	104381594	104382594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 3 of 14)	B1_Mur2|SINE|Alu	60197.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-109914436-4	chr9	109913892	109914892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-17382.0	NM_001205331	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50931050-4	chr14	50930539	50931539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310505)	promoter-TSS (NM_001310505)	-190.0	NM_001310507	219024.0	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161|Pip4p1	transmembrane protein 55b	protein-coding	53.5	200.0	109.5	45.0	89.5	96.5
Merged-chr2-71843499-4	chr2	71843010	71844010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008397, intron 20 of 25)	intron (NM_008397, intron 20 of 25)	-29714.0	NM_172665	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	27.5	56.0	31.0	0.0	26.5	1.5
Merged-chr12-80436746-4	chr12	80436277	80437277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177267)	promoter-TSS (NM_177267)	-176.0	NM_177267	320808.0	Mm.220310	NM_177267	ENSMUSG00000049106	Dcaf5	9430020B07Rik|AI325023|AI430035|AI848110|AW124614|BCRG2|BCRP2|Wdr22	DDB1 and CUL4 associated factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98747463-2	chr12	98746963	98747963	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008506, intron 1 of 14)	intron (NM_001008506, intron 1 of 14)	495.0	NM_029334	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4704316-4	chr11	4703819	4704819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356391)	promoter-TSS (NM_001356391)	25.0	NM_197979	66152.0	Mm.269736	NM_197979	ENSMUSG00000059534	Uqcr10	1110020P15Rik|AA960494|Ucrc	ubiquinol-cytochrome c reductase, complex III subunit X	protein-coding	22.5	41.0	63.0	5.5	37.0	38.5
Merged-chr17-45585503-4	chr17	45585000	45586000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001199116, exon 13 of 13)	3' UTR (NM_001199116, exon 13 of 13)	6893.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-30986423-4	chr11	30985926	30986926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026527)	promoter-TSS (NM_026527)	-61.0	NM_001290667	68044.0	Mm.32656	NM_026527	ENSMUSG00000020309	Chac2	-	ChaC, cation transport regulator 2	protein-coding	14.5	49.5	28.5	23.5	76.0	35.0
Merged-chr11-98053383-2	chr11	98052883	98053883	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146028)	promoter-TSS (NM_146028)	79.0	NM_146028	217154.0	Mm.181008	NM_146028	ENSMUSG00000017400	Stac2	24b2|24b2/STAC2|AW240854	SH3 and cysteine rich domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34500962-4	chr19	34500468	34501468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 7 of 9)	RLTR11A|LTR|ERVK	-25833.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.0	0.0	0.0	0.0	3.5	0.5
Merged-chr14-52451312-3	chr14	52450817	52451817	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_020514)	TTS (NM_020514)	924.0	NM_020514	57271.0	Mm.88824	NM_020514	ENSMUSG00000035626	Olfr1509	MOR244-3|Mor83|Or83	olfactory receptor 1509	protein-coding	0.0	0.0	0.0	5.5	3.0	2.5
Merged-chr1-91063331-4	chr1	91062833	91063833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	9889.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5785911-4	chr11	5785404	5786404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2579.0	NM_001146309	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78512189-4	chr11	78511703	78512703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026389)	promoter-TSS (NM_026389)	-35.0	NM_199199	195040.0	Mm.383431	NM_199199	ENSMUSG00000051232	Tmem199	AI316787|AI848469|R74819	transmembrane protein 199	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43589198-4	chr1	43588694	43589694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-141408.0	NM_024283	78896.0	Mm.50109	NM_024283	ENSMUSG00000026051	1500015O10Rik	Ecrg4	RIKEN cDNA 1500015O10 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-17695537-2	chr13	17695043	17696043	+	1000.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_138654)	promoter-TSS (NM_138654)	130.0	NM_025479	66308.0	Mm.291109	NM_025479	ENSMUSG00000012429	Mplkip	2810021B07Rik|C330007M08Rik|Ttdn1	M-phase specific PLK1 intereacting protein	protein-coding	51.0	55.0	68.5	35.5	92.5	58.0
Merged-chr8-84975606-4	chr8	84975104	84976104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011563)	TTS (NM_011563)	3144.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	78.0	437.5	200.5	147.5	512.5	282.5
Merged-chr6-57691682-4	chr6	57691148	57692148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025574, intron 1 of 1)	intron (NM_025574, intron 1 of 1)	430.0	NM_025574	66459.0	Mm.44201	NM_025574	ENSMUSG00000043162	Pyurf	2610022G08Rik|AI847956|Prey	Pigy upstream reading frame	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94987645-2	chr11	94987145	94988145	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3567.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25077093-4	chr7	25076606	25077606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001168506, exon 2 of 3)	5' UTR (NM_001168506, exon 2 of 3)	299.0	NM_175477	232976.0	Mm.41568	NM_175477	ENSMUSG00000045252	Zfp574	A630056B21Rik|Znf574	zinc finger protein 574	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32594283-2	chr2	32593783	32594783	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001276425, exon 4 of 6)	exon (NM_001276425, exon 4 of 6)	-5426.0	NM_001025311	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79750398-4	chr12	79749869	79750869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 8 of 10)	intron (NM_009014, intron 8 of 10)	174364.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117136195-4	chr4	117135691	117136691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2228.0	NM_001313916	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	22.0	91.0	65.5	32.5	89.0	97.5
Merged-chr5-140389312-4	chr5	140388795	140389795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172277)	promoter-TSS (NM_172277)	13.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79130799-4	chr12	79130278	79131278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009705)	promoter-TSS (NM_009705)	-10.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	0.5	1.0	2.5	5.0	2.0	4.5
Merged-chr2-150896045-4	chr2	150895526	150896526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 1 of 12)	MLT1A0-int|LTR|ERVL-MaLR	8705.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3177400-2	chr11	3176878	3177878	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 6 of 32)	intron (NM_030207, intron 6 of 32)	16085.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28382064-4	chr7	28381562	28382562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2834.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-12535741-4	chr11	12535246	12536246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70786.0	NM_001282993	12808.0	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102745036-4	chr12	102744508	102745508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001324515, exon 2 of 2)	exon (NM_001324515, exon 2 of 2)	1248.0	NM_177140	320351.0	Mm.86546	NM_177140	ENSMUSG00000046675	Tmem251	D230037D09Rik	transmembrane protein 251	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126872755-4	chr8	126872265	126873265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G|LTR|ERVL-MaLR	23745.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128870916-4	chr2	128870426	128871426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024237, intron 1 of 7)	intron (NM_024237, intron 1 of 7)	6994.0	NM_024237	70370.0	Mm.5107	NM_024237	ENSMUSG00000027386	Fbln7	1600015H20Rik|AI464334|TM14	fibulin 7	protein-coding	2.5	7.5	9.0	7.0	9.0	29.5
Merged-chr5-31254619-2	chr5	31254119	31255119	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026298, intron 43 of 47)	intron (NM_026298, intron 43 of 47)	2913.0	NM_027221	69815.0	Mm.389609	NM_027221	ENSMUSG00000029149	Krtcap3	2010001C09Rik|AW321088|Kcp3	keratinocyte associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128333190-1	chr2	128332690	128333690	+	1000.0	f1_c57bl6.idr	intron (NR_028590, intron 1 of 2)	B4|SINE|B4	96161.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0.0	0.0	3.5	0.0	0.0	0.0
Merged-chr2-160086188-3	chr2	160085652	160086652	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69499.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	66.0	102.0	62.5	66.5	118.0	117.5
Merged-chr19-9931653-2	chr19	9931148	9932148	+	1000.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-32115.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	130.5	222.0	128.5	76.0	301.0	181.5
Merged-chr4-34386558-4	chr4	34386051	34387051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-164064.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101653624-4	chr4	101653136	101654136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175036, intron 2 of 3)	MTD|LTR|ERVL-MaLR	5853.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	83.5	110.5	122.5	78.0	177.5	141.5
Merged-chr14-33213960-4	chr14	33213451	33214451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2872.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-66864562-4	chr10	66864074	66865074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55810.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10785631-4	chr16	10785124	10786124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271603)	promoter-TSS (NM_001271603)	-88.0	NM_001271603	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101906279-2	chr7	101905779	101906779	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081679)	promoter-TSS (NM_001081679)	80.0	NM_001081679	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-75557466-4	chr3	75556960	75557960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019745)	promoter-TSS (NM_019745)	-33.0	NM_009250	20713.0	Mm.41560	NM_009250	ENSMUSG00000027834	Serpini1	AI837402|Ns|PI-12|PI12|Spi17	serine (or cysteine) peptidase inhibitor, clade I, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180255865-4	chr2	180255357	180256357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	-1522.0	NM_025587	66481.0	Mm.289669	NM_025587	ENSMUSG00000039001	Rps21	1810049N11Rik|2410030A14Rik	ribosomal protein S21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125252432-4	chr6	125251923	125252923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-13102.0	NR_015527	73870.0	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81586089-4	chr15	81585598	81586598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177821)	promoter-TSS (NM_177821)	-116.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32200228-3	chr19	32199711	32200711	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	10802.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139479248-4	chr5	139478776	139479776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133349, intron 3 of 6)	intron (NM_133349, intron 3 of 6)	5215.0	NM_133349	100494.0	Mm.24521	NM_133349	ENSMUSG00000053581	Zfand2a	AA407930|AU016206|Airap	zinc finger, AN1-type domain 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43493413-4	chr4	43492912	43493912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_001460)	promoter-TSS (NR_001460)	47.0	NM_001037913	622404.0	Mm.289109	NM_001037913	ENSMUSG00000028461	Ccdc107	-	coiled-coil domain containing 107	protein-coding	31.0	67.0	61.0	36.5	69.0	44.5
Merged-chr18-73816608-4	chr18	73816106	73817106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1214.0	NM_145494	107029.0	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	51.0	95.5	109.0	34.0	85.0	74.0
Merged-chr12-3894720-4	chr12	3894204	3895204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 1 of 17)	intron (NM_153743, intron 1 of 17)	2960.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-44274722-4	chr2	44274240	44275240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 12 of 14)	intron (NM_001301831, intron 12 of 14)	-209416.0	NR_040622	320872.0	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92854684-2	chr16	92854184	92855184	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28610.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8939172-4	chr4	8938683	8939683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	187859.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119208601-1	chr2	119208101	119209101	+	1000.0	f0_c57.idr	promoter-TSS (NM_001164827)	promoter-TSS (NM_001164827)	-119.0	NM_001164827	72008.0	Mm.386807	NM_028054	ENSMUSG00000068580	Zfyve19	1500041L05Rik|ANCHR	zinc finger, FYVE domain containing 19	protein-coding	86.5	258.0	208.0	118.5	237.5	210.5
Merged-chr4-43972356-4	chr4	43971862	43972862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027450, intron 4 of 4)	intron (NM_027450, intron 4 of 4)	-11142.0	NM_001002787	442829.0	Mm.348215	NM_001002787	ENSMUSG00000070999	Ccin	4933417A14Rik	calicin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102513224-4	chr7	102512702	102513702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-18429.0	NM_146840	258837.0	Mm.377714	NM_146840	ENSMUSG00000044824	Olfr545	MOR42-1|S50	olfactory receptor 545	protein-coding	19.5	1.5	17.5	0.0	1.0	0.5
Merged-chr3-97208807-2	chr3	97208307	97209307	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029933, exon 8 of 10)	exon (NM_029933, exon 8 of 10)	18557.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91869127-3	chr16	91868618	91869618	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 27 of 28)	intron (NM_001110275, intron 27 of 28)	62512.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	41.5	100.0	74.0	52.5	86.5	72.5
Merged-chr1-16651298-4	chr1	16650797	16651797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310470, intron 1 of 4)	intron (NM_001310470, intron 1 of 4)	5568.0	NM_026456	67923.0	Mm.289248	NM_026456	ENSMUSG00000079658	Eloc	2610043E24Rik|2610301I15Rik|AA407206|AI987979|AW049146|Tceb1	elongin C	protein-coding	10.5	17.5	22.5	13.5	19.5	24.5
Merged-chr10-37139764-2	chr10	37139264	37140264	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008538)	promoter-TSS (NM_008538)	-838.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-69144544-4	chr17	69144071	69145071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355732, intron 1 of 21)	intron (NM_001355732, intron 1 of 21)	-12173.0	NM_013813	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-33969414-4	chr6	33968919	33969919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 17 of 17)	intron (NM_009148, intron 17 of 17)	-60029.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80130860-4	chr12	80130354	80131354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033514, intron 2 of 2)	intron (NR_033514, intron 2 of 2)	1990.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	30.0	83.5	49.0	24.5	88.0	70.5
Merged-chr1-71798787-4	chr1	71798265	71799265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-89347.0	NR_027659	667931.0	Mm.214128	NR_027658	ENSMUSG00000099707	Gm8883	EG667931|Gm554	predicted gene 8883	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33056478-4	chr16	33055971	33056971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021338)	promoter-TSS (NM_021338)	-11.0	NM_001130484	57808.0	Mm.19355	NM_021338	ENSMUSG00000060636	Rpl35a	2810431L15Rik|Rpl35	ribosomal protein L35A	protein-coding	37.0	136.0	101.0	56.0	155.0	132.0
Merged-chr7-109519621-1	chr7	109519121	109520121	+	1000.0	f0_balb.idr	promoter-TSS (NR_028079)	promoter-TSS (NR_028079)	426.0	NM_011975	26451.0	Mm.305750	NM_011975	ENSMUSG00000046364	Rpl27a	L27'|L27A|L29	ribosomal protein L27A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37347984-4	chr13	37347482	37348482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	2637.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125179281-4	chr5	125178770	125179770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253904)	promoter-TSS (NM_001253904)	-56.0	NM_001253904	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	49.0	101.0	49.0	30.0	73.5	53.0
Merged-chr6-113661220-4	chr6	113660705	113661705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	22738.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23749007-7	chr17	23748563	23749563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015472)	promoter-TSS (NR_015472)	-173.0	NR_015472	638247.0	Mm.382600	NR_015472	ENSMUSG00000097006	9530082P21Rik	E030034P13Rik	RIKEN cDNA 9530082P21 gene	ncRNA	43.0	87.5	93.0	57.5	75.0	93.0
Merged-chr2-180119228-4	chr2	180118727	180119727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144500)	promoter-TSS (NM_144500)	-139.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	14.0	46.5	41.0	21.0	71.5	50.5
Merged-chr9-65032991-2	chr9	65032491	65033491	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028906, intron 1 of 20)	CpG	533.0	NM_028906	74388.0	Mm.202749	NM_028906	ENSMUSG00000032393	Dpp8	2310004I03Rik|4932434F09Rik|AI666706|DPP VIII	dipeptidylpeptidase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-181016152-2	chr1	181015652	181016652	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010145, intron 1 of 8)	intron (NM_010145, intron 1 of 8)	1417.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55467943-2	chr11	55467443	55468443	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-1809.0	NM_013716	27041.0	Mm.39631	NM_013716	ENSMUSG00000018583	G3bp1	AI849976|B430204O07|C87777|G3bp|mKIAA4115	GTPase activating protein (SH3 domain) binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-25020337-4	chr13	25019845	25020845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013389)	promoter-TSS (NM_001013389)	-28.0	NM_001013389	380836.0	Mm.387097	NM_001013389	ENSMUSG00000021339	Mrs2	Gm902|HPT|Mrs2l|RPT	MRS2 magnesium transporter	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74709395-4	chr15	74708871	74709871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008415)	promoter-TSS (NM_008415)	-49.0	NM_008415	16469.0	Mm.87052	NM_008415	ENSMUSG00000046380	Jrk	-	jerky	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20842810-4	chr14	20842305	20843305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008873, exon 11 of 11)	3' UTR (NM_008873, exon 11 of 11)	6143.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-69586213-4	chr18	69585713	69586713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	240053.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76623477-4	chr11	76623000	76624000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-45761.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-90716487-4	chr6	90715992	90716992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134383)	promoter-TSS (NM_001134383)	37.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-70644544-4	chr18	70644068	70645068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76276.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-101034602-4	chr9	101034121	101035121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311149, intron 1 of 13)	CpG	263.0	NM_001311149	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	40.5	113.0	101.0	41.0	115.0	81.5
Merged-chr8-72443828-4	chr8	72443355	72444355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028500)	promoter-TSS (NM_028500)	-25.0	NM_028170	72254.0	Mm.30136	NM_028170	ENSMUSG00000052794	1700030K09Rik	-	RIKEN cDNA 1700030K09 gene	protein-coding	26.5	60.0	50.5	30.5	63.0	24.0
Merged-chr5-93267584-4	chr5	93267099	93268099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007635)	promoter-TSS (NM_007635)	26.0	NM_007635	12452.0	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165928033-4	chr2	165927531	165928531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-43193.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	2.5	2.5	2.5	13.5	10.0	17.0
Merged-chr4-88537586-4	chr4	88537081	88538081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14787.0	NM_010510	15977.0	Mm.1245	NM_010510	ENSMUSG00000048806	Ifnb1	IFN-beta|IFNB|Ifb	interferon beta 1, fibroblast	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6428855-2	chr4	6428355	6429355	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 9 of 30)	intron (NM_010945, intron 9 of 30)	25416.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137333603-4	chr5	137333087	137334087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031406)	promoter-TSS (NM_031406)	-5.0	NM_031406	83704.0	Mm.235625	NM_031406	ENSMUSG00000037344	Slc12a9	CIP1	solute carrier family 12 (potassium/chloride transporters), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-38167944-4	chr7	38167439	38168439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15278.0	NM_001085385	72244.0	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	2.5	0.0	0.0	5.5	0.0	0.0
Merged-chr9-21164140-4	chr9	21163604	21164604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1610.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-84585217-2	chr6	84584717	84585717	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177713, intron 2 of 6)	CpG-12217	8593.0	NM_175475	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139169507-4	chr4	139169001	139170001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11154.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	197.0	456.0	280.5	167.0	350.5	378.5
Merged-chr11-59472504-4	chr11	59471994	59472994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178417)	promoter-TSS (NM_178417)	-20.0	NM_178417	237775.0	Mm.339604	NM_178417	ENSMUSG00000054519	Zfp867	-	zinc finger protein 867	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-121462910-3	chr1	121462398	121463398	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029955, intron 10 of 23)	intron (NM_029955, intron 10 of 23)	31831.0	NM_029955	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	15.5	43.0	19.5	7.5	9.0	13.5
Merged-chr7-101949165-4	chr7	101948664	101949664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15307.0	NM_001162974	69358.0	Mm.214841	NM_027053	ENSMUSG00000064307	Lrrc51	1700008D07Rik|Lrtomt	leucine rich repeat containing 51	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121890782-4	chr3	121890278	121891278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62451.0	NM_172525	214137.0	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149782583-4	chr4	149782101	149783101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8334.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	3.5	17.5	11.0	6.0	11.0	14.5
Merged-chr6-84752957-4	chr6	84752450	84753450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 19 of 21)	intron (NM_177077, intron 19 of 21)	-159042.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-10874557-4	chr4	10874053	10875053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026005)	promoter-TSS (NM_026005)	55.0	NM_026005	67157.0	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	107.0	261.0	162.5	108.0	197.0	127.0
Merged-chr2-167632119-4	chr2	167631622	167632622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311131)	promoter-TSS (NM_001311131)	-117.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-78732271-2	chr14	78731788	78732788	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081336, intron 1 of 29)	CpG	441.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.5	0.0	0.0	3.0	8.0	1.0
Merged-chr6-121226296-4	chr6	121225800	121226800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_017379)	TTS (NM_017379)	15566.0	NM_017379	53857.0	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153349901-1	chr2	153349401	153350401	+	1000.0	f1_balb.idr	intron (NM_001039939, intron 1 of 11)	intron (NM_001039939, intron 1 of 11)	3762.0	NM_001039939	228790.0	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	7.0	15.0	13.0	6.0	10.0	15.5
Merged-chr2-127133967-4	chr2	127133455	127134455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144818)	promoter-TSS (NM_144818)	-1.0	NM_144818	215387.0	Mm.29786	NM_144818	ENSMUSG00000034906	Ncaph	A730011O11Rik|Brrn1|CAP-H|HCAP-H|mCAP-H	non-SMC condensin I complex, subunit H	protein-coding	49.5	109.0	80.0	39.5	126.5	74.0
Merged-chr1-67380481-2	chr1	67379981	67380981	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER3D-int|LTR|ERVK	257454.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-92722397-4	chr10	92721914	92722914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008682)	promoter-TSS (NM_008682)	4.0	NM_008682	17997.0	Mm.2998	NM_008682	ENSMUSG00000019988	Nedd1	-	neural precursor cell expressed, developmentally down-regulated gene 1	protein-coding	12.0	36.0	23.5	20.0	16.5	28.5
Merged-chr1-34803917-4	chr1	34803419	34804419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183019, intron 1 of 9)	(TG)n|Simple_repeat|Simple_repeat	2197.0	NM_183019	226970.0	Mm.41604	NM_183019	ENSMUSG00000037509	Arhgef4	9330140K16Rik|Asef	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92118047-4	chr5	92117571	92118571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	19654.0	NM_001359197	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	0.0	0.0	8.0	8.0	4.0	1.5
Merged-chr10-81349971-2	chr10	81349471	81350471	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163165, intron 2 of 9)	intron (NM_001163165, intron 2 of 9)	455.0	NM_001163165	15353.0	Mm.38474	NM_010440	ENSMUSG00000020232	Hmg20b	AW610687|BRAF35|Hmgx2|Hmgxb2|Smarce1r	high mobility group 20B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97821561-4	chr15	97821088	97822088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	-6725.0	NM_001204281	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100814704-4	chr11	100814200	100815200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113563, intron 1 of 18)	intron (NM_001113563, intron 1 of 18)	7870.0	NM_011489	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-118081986-4	chr3	118081512	118082512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-213076.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-52567512-4	chr18	52567011	52568011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Helitron1Na_Mam|RC|Helitron	-37644.0	NM_001286182	16948.0	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	3.0	11.0	9.0	1.0	8.0	5.5
Merged-chr19-58978914-4	chr19	58978410	58979410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175172, intron 14 of 14)	intron (NM_175172, intron 14 of 14)	-35238.0	NM_001327998	73442.0	Mm.39739	NM_175199	ENSMUSG00000025092	Hspa12a	1700063D12Rik|AI118035|AI840429|AW048913|AW556406|D5Mgi40|Gm19925|mKIAA0417	heat shock protein 12A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59440658-2	chr2	59440158	59441158	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43995.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55685961-4	chr14	55685464	55686464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4147.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-33083659-3	chr15	33083167	33084167	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176073, intron 1 of 7)	intron (NM_176073, intron 1 of 7)	538.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157457613-4	chr2	157457087	157458087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 4 of 13)	CpG	33294.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5741195-4	chr11	5740702	5741702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361590)	promoter-TSS (NM_001361590)	-26.0	NM_178623	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	11.0	39.0	22.5	15.5	47.0	20.0
Merged-chr12-87406579-1	chr12	87406079	87407079	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-18224.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	0.0	0.0	0.0	27.0	61.5	44.5
Merged-chr1-191756742-4	chr1	191756237	191757237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134829, intron 4 of 7)	intron (NM_001134829, intron 4 of 7)	38342.0	NM_001134829	226856.0	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105011810-4	chr5	105011303	105012303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29086.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61224059-4	chr8	61223570	61224570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021506)	promoter-TSS (NM_021506)	-101.0	NM_021506	59009.0	Mm.27949	NM_021506	ENSMUSG00000031642	Sh3rf1	2200003J05Rik|Posh|R75531|Sh3md2	SH3 domain containing ring finger 1	protein-coding	7.5	15.0	5.5	4.5	4.5	4.0
Merged-chr10-80387212-2	chr10	80386712	80387712	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_198615, exon 1 of 2)	exon (NM_198615, exon 1 of 2)	439.0	NM_198615	237400.0	Mm.268389	NM_198615	ENSMUSG00000048696	Mex3d	BC059858|Rkhd1	mex3 RNA binding family member D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-110602049-4	chr13	110601552	110602552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	207008.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	19.5	31.5	27.5	14.0	61.0	36.0
Merged-chr3-146655431-4	chr3	146654931	146655931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4114.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-34882399-1	chr4	34881899	34882899	+	1000.0	f0_balb.idr	intron (NM_013889, intron 1 of 7)	CpG	549.0	NM_013889	30046.0	Mm.38193	NM_013889	ENSMUSG00000039967	Zfp292	5730450D02Rik|5830493J20Rik|9430062L07Rik|AI449016|Krox-10|Zfp-15|Zfp15|Zn-15|Zn-16|mKIAA0530	zinc finger protein 292	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12395221-4	chr13	12394717	12395717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144835)	promoter-TSS (NM_144835)	-158.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11343507-4	chr16	11342996	11343996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 1 of 20)	MIR3|SINE|MIR	20592.0	NM_028964	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171389715-1	chr1	171389215	171390215	+	1000.0	f1_balb.idr	intron (NM_001005508, intron 1 of 11)	intron (NM_001005508, intron 1 of 11)	755.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	253.0	682.5	503.5	243.0	754.5	401.0
Merged-chr5-151333290-4	chr5	151332799	151333799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35376.0	NR_045700	625175.0	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-47320090-4	chr4	47319573	47320573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-33149.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80369182-4	chr7	80368646	80369646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172903, intron 3 of 23)	MER117|DNA|hAT-Charlie	2229.0	NM_172903	140481.0	Mm.269245	NM_172903	ENSMUSG00000038886	Man2a2	1700052O22Rik|4931438M07Rik|AI480988|MX|Man IIx	mannosidase 2, alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70992936-4	chr17	70992428	70993428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357820)	TTS (NM_001357820)	-2412.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	112.5	260.0	163.5	128.0	324.5	373.0
Merged-chr10-126986847-4	chr10	126986341	126987341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113470, intron 1 of 7)	intron (NM_001113470, intron 1 of 7)	8124.0	NM_001113470	52468.0	Mm.29490	NM_146012	ENSMUSG00000078429	Ctdsp2	AI586070|D10Ertd73e|OS-4|OS4|SCP2	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22701551-4	chr8	22701053	22702053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159774, intron 2 of 21)	Lx8b|LINE|L1	5030.0	NM_010546	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49146445-2	chr13	49145945	49146945	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290313, intron 2 of 29)	intron (NM_001290313, intron 2 of 29)	1883.0	NM_029361	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41465027-4	chr4	41464546	41465546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025539)	promoter-TSS (NM_025539)	-102.0	NM_025539	66401.0	Mm.28574	NM_025539	ENSMUSG00000028443	Nudt2	2310051L06Rik|AA939917|APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding	0.5	0.0	0.0	0.5	0.0	0.0
Merged-chr14-63138997-2	chr14	63138497	63139497	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 7 of 9)	intron (NM_007798, intron 7 of 9)	16535.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132006726-4	chr2	132006214	132007214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175445, intron 4 of 10)	intron (NM_175445, intron 4 of 10)	23274.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44399095-4	chr11	44398574	44399574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303244)	promoter-TSS (NM_001303244)	-989.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	3.0	16.0	4.5	6.0	4.0	7.0
Merged-chr19-6980527-4	chr19	6979980	6980980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360286)	promoter-TSS (NM_001360286)	-16.0	NM_001166368	14227.0	Mm.4234	NM_008020	ENSMUSG00000056629	Fkbp2	mFKBP13|mFKBP2	FK506 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-3314336-4	chr17	3313842	3314842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12231.0	NM_001122998	24001.0	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	5.5	4.5	1.5	0.0	0.0	1.0
Merged-chr6-112947351-4	chr6	112946837	112947837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080448)	promoter-TSS (NM_080448)	-71.0	NM_080448	259302.0	Mm.236401	NM_080448	ENSMUSG00000030257	Srgap3	AI452337|Arhgap14|D130026O08Rik|Gbi|MEGAP|WRP|mKIAA0411	SLIT-ROBO Rho GTPase activating protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47459092-4	chr19	47458573	47459573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	5338.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	8.5	17.0	11.5	9.0	16.0	31.5
Merged-chr11-75656635-2	chr11	75656135	75657135	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080775, intron 1 of 31)	intron (NM_001080775, intron 1 of 31)	620.0	NM_001080775	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-23418376-7	chr5	23417911	23418911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	15942.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38940804-2	chr6	38940304	38941304	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	intron (NM_011539, intron 1 of 12)	21818.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155692304-4	chr2	155691749	155692749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163452, exon 1 of 19)	exon (NM_001163452, exon 1 of 19)	135.0	NM_019828	56407.0	Mm.234944	NM_019828	ENSMUSG00000038324	Trpc4ap	4833429F06Rik|D2Ertd113e|Trrp4ap|mFLJ00177|truss	transient receptor potential cation channel, subfamily C, member 4 associated protein	protein-coding	25.0	43.5	69.5	10.5	43.0	47.0
Merged-chr19-3847633-4	chr19	3847138	3848138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4135.0	NM_001271496	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180428527-2	chr1	180428027	180429027	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54977.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18626677-4	chr16	18626152	18627152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_213614, intron 2 of 11)	CpG	3286.0	NM_213614	18951.0	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25224225-2	chr2	25223725	25224725	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_146116, exon 2 of 4)	exon (NM_146116, exon 2 of 4)	477.0	NM_146116	227613.0	Mm.227260	NM_146116	ENSMUSG00000036752	Tubb4b	4930542G03Rik|Tubb2c|Tubb2c1	tubulin, beta 4B class IVB	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-74092961-4	chr5	74092454	74093454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_145133)	promoter-TSS (NR_145133)	-106.0	NR_015531	70036.0	Mm.46547	NR_015531	ENSMUSG00000053656	Dancr	2700023E23Rik	differentiation antagonizing non-protein coding RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128339567-2	chr10	128339067	128340067	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026444, intron 1 of 10)	B1F1|SINE|Alu	1840.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-19628378-4	chr2	19627901	19628901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	29496.0	NR_033642	100041244.0	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88462892-4	chr17	88462412	88463412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001355743, exon 2 of 5)	exon (NM_001355743, exon 2 of 5)	22208.0	NM_001355742	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-66144059-4	chr2	66143578	66144578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19285.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96466676-4	chr15	96466165	96467165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-5822.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122654568-4	chr6	122654058	122655058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	28134.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86201726-2	chr11	86201226	86202226	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178309)	promoter-TSS (NM_178309)	366.0	NR_130958	74038.0	Mm.171304	NR_130958	ENSMUSG00000085208	Brip1os	4632419I22Rik	BRCA1 interacting protein C-terminal helicase 1, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80145278-2	chr11	80144778	80145778	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3125.0	NM_183275	68550.0	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156468692-6	chr1	156468163	156469163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 1 of 15)	(CA)n|Simple_repeat|Simple_repeat	5665.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	163.0	361.0	286.0	156.5	248.0	256.5
Merged-chr18-82853999-2	chr18	82853499	82854499	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1898.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105248209-7	chr4	105247712	105248712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90865.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	21.0	94.0	70.0	40.0	80.5	73.0
Merged-chr16-23233606-4	chr16	23233079	23234079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 1 of 7)	intron (NM_001252505, intron 1 of 7)	7558.0	NM_001252505	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108635709-4	chr12	108635208	108636208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163396)	promoter-TSS (NM_001163396)	-45.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-54735476-4	chr3	54734972	54735972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025442)	promoter-TSS (NM_025442)	-67.0	NM_025442	66248.0	Mm.144218	NM_025442	ENSMUSG00000036632	Alg5	1500026A19Rik|2600005J22Rik|AV009521|AV170001|AW545564	asparagine-linked glycosylation 5 (dolichyl-phosphate beta-glucosyltransferase)	protein-coding	9.5	25.0	14.5	9.5	17.5	16.5
Merged-chr19-31764447-3	chr19	31763960	31764960	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013833, intron 1 of 17)	CpG	573.0	NM_001013833	19091.0	Mm.381170	NM_011160	ENSMUSG00000052920	Prkg1	AW125416|CGKI|Gm19690|Prkg1b|Prkgr1b	protein kinase, cGMP-dependent, type I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-61416109-4	chr3	61415609	61416609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51602.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120490583-2	chr8	120490083	120491083	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	1717.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-97992662-4	chr16	97992165	97993165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4650.0	NM_001362093	245305.0	Mm.148033	NM_001362093		B230307C23Rik	8030444G23Rik|EG245305	RIKEN cDNA B230307C23 gene	protein-coding	6.0	31.5	6.5	11.5	30.5	9.0
Merged-chr6-87184057-4	chr6	87183552	87184552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054041, intron 16 of 17)	intron (NM_054041, intron 16 of 17)	79306.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-66437999-4	chr18	66437512	66438512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20592.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20382164-4	chr16	20381681	20382681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013790, intron 12 of 29)	intron (NM_013790, intron 12 of 29)	44213.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-83266151-4	chr4	83265651	83266651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 3 of 19)	intron (NM_027238, intron 3 of 19)	58038.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	62.0	218.5	107.5	114.0	408.0	212.5
Merged-chr8-105367350-2	chr8	105366850	105367850	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081332, intron 15 of 15)	B2_Mm2|SINE|B2	-8031.0	NM_001081333	102075.0	Mm.32034	NM_175321	ENSMUSG00000014782	Plekhg4	4931414L13Rik|AI448583|mFLJ00068	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39614601-4	chr1	39614102	39615102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36580.0	NM_170597	263764.0	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6335376-2	chr19	6334876	6335876	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001168490, exon 1 of 8)	5' UTR (NM_001168490, exon 1 of 8)	337.0	NM_008583	17283.0	Mm.12917	NM_008583	ENSMUSG00000024947	Men1	AW045611	multiple endocrine neoplasia 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60787200-4	chr18	60786705	60787705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12609.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	0.5	2.0	3.5	0.0	2.0	4.0
Merged-chr10-75635846-4	chr10	75635345	75636345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001162913)	TTS (NM_001162913)	8163.0	NM_001162913	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-78895954-4	chr1	78895479	78896479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151519, intron 3 of 3)	MTC|LTR|ERVL-MaLR	79068.0	NM_021342	57814.0	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding	2.5	5.5	11.5	6.0	6.5	15.0
Merged-chr1-86214390-4	chr1	86213862	86214862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027456, intron 19 of 20)	intron (NM_027456, intron 19 of 20)	59582.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45746968-4	chr17	45746464	45747464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 1 of 4)	intron (NR_152153, intron 1 of 4)	12458.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	20.0	6.5	4.0	10.0	14.5	3.0
Merged-chr5-35103283-4	chr5	35102779	35103779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013587, intron 1 of 7)	intron (NM_013587, intron 1 of 7)	2418.0	NM_013587	16976.0	Mm.277661	NM_013587	ENSMUSG00000029103	Lrpap1	AA617339|AI790446|AU042172|C77774|HBP44|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56622462-4	chr18	56621979	56622979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34131.0	NM_026099	67343.0	Mm.87057	NM_026099	ENSMUSG00000032900	Tex43	1700065I17Rik|Tseg7	testis expressed 43	protein-coding	1.0	2.5	0.5	0.5	2.5	0.5
Merged-chr10-80150132-2	chr10	80149632	80150632	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_021565, exon 2 of 9)	exon (NM_021565, exon 2 of 9)	450.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35057252-4	chr7	35056762	35057762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009884)	promoter-TSS (NM_009884)	-696.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-37723319-2	chr3	37722819	37723819	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198657, intron 1 of 2)	intron (NM_198657, intron 1 of 2)	1041.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25976744-4	chr8	25976309	25977309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029884)	promoter-TSS (NM_029884)	-65.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	135.5	413.0	320.5	177.0	398.0	296.0
Merged-chr13-20151760-4	chr13	20151257	20152257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	61250.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	19.0	13.5	19.0	19.5	45.5	40.0
Merged-chr2-73451755-2	chr2	73451255	73452255	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	2134.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72259534-4	chr5	72259034	72260034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 10 of 22)	intron (NR_003966, intron 10 of 22)	56191.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95367895-4	chr10	95367382	95368382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	31606.0	NR_045337	69629.0	Mm.250542	NR_045337	ENSMUSG00000100550	2310039L15Rik	A53T-syn|G2-3|PrPsynA53T|Tg(Prnp-SNCA*A53T)23Mkle	RIKEN cDNA 2310039L15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25133415-4	chr17	25132911	25133911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011930)	promoter-TSS (NM_011930)	20.0	NM_011930	26373.0	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	12.0	20.0	6.0	10.5	11.0	15.0
Merged-chr1-155145792-4	chr1	155145295	155146295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008209, intron 1 of 5)	intron (NM_008209, intron 1 of 5)	1019.0	NM_001355063	15064.0	Mm.7580	NM_008209	ENSMUSG00000026471	Mr1	H2ls	major histocompatibility complex, class I-related	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-35769419-4	chr11	35768928	35769928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145962)	promoter-TSS (NM_145962)	-67.0	NM_145962	211347.0	Mm.255044	NM_145962	ENSMUSG00000018846	Pank3	-	pantothenate kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116197729-2	chr6	116197229	116198229	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4355.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55787430-2	chr16	55786930	55787930	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34708.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78325949-4	chr15	78325458	78326458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007780)	promoter-TSS (NM_007780)	-32.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	3.5	24.5	29.0	14.0	20.5	15.0
Merged-chr18-80490786-4	chr18	80490301	80491301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21134.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55022892-4	chr13	55022398	55023398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1513.0	NM_001033245	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-105746619-4	chr7	105746118	105747118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009906, exon 13 of 13)	3' UTR (NM_009906, exon 13 of 13)	-2280.0	NM_020024	24075.0	Mm.274846	NM_020024	ENSMUSG00000043866	Taf10	30kDa|AU041226|TAFII30|Taf2h	TATA-box binding protein associated factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102017519-7	chr7	102017030	102018030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010531, intron 2 of 6)	intron (NM_010531, intron 2 of 6)	625.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	73.0	130.5	75.5	55.5	144.0	103.5
Merged-chr9-89256743-4	chr9	89256240	89257240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	45356.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18498758-4	chr16	18498258	18499258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023120)	promoter-TSS (NM_023120)	45.0	NM_001285491	13972.0	Mm.236139	NM_023120	ENSMUSG00000000884	Gnb1l	ESTM55|Gm16314|Me49f07|Wdr14|Wdvcf	guanine nucleotide binding protein (G protein), beta polypeptide 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4625638-4	chr19	4625128	4626128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023131)	promoter-TSS (NM_023131)	-11.0	NM_023131	19671.0	Mm.391143	NM_023131	ENSMUSG00000024889	Rce1	D19Ertd283e|D19Ertd98e	Ras converting CAAX endopeptidase 1	protein-coding	23.0	167.5	98.5	32.5	67.0	54.0
Merged-chr10-39731950-4	chr10	39731425	39732425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038037)	promoter-TSS (NR_038037)	82.0	NR_038037	327744.0	Mm.295265	NM_183198	ENSMUSG00000087177	E130307A14Rik	-	RIKEN cDNA E130307A14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-37427342-4	chr6	37426834	37427834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	14814.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110980448-3	chr11	110979936	110980936	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010604, intron 1 of 1)	intron (NM_010604, intron 1 of 1)	12403.0	NM_001252207	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	28.0	94.0	58.5	51.5	142.0	89.0
Merged-chr18-36735027-4	chr18	36734518	36735518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028036)	promoter-TSS (NM_028036)	-52.0	NM_028036	71983.0	Mm.135188	NM_028036	ENSMUSG00000006850	Tmco6	2410015B03Rik	transmembrane and coiled-coil domains 6	protein-coding	9.5	17.0	17.5	20.5	32.0	20.0
Merged-chr2-60125328-4	chr2	60124836	60125836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 1 of 35)	intron (NM_001001182, intron 1 of 35)	404.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44295962-4	chr19	44295458	44296458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009128, intron 2 of 5)	intron (NM_009128, intron 2 of 5)	2282.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	4.5	11.5	7.0	4.5	3.5	20.5
Merged-chr11-29694270-4	chr11	29693725	29694725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194051, intron 1 of 8)	intron (NM_194051, intron 1 of 8)	451.0	NM_194051	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	26.0	53.5	29.5	18.5	38.0	33.0
Merged-chr6-124814166-4	chr6	124813663	124814663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001326594)	TTS (NM_001326594)	133.0	NM_009415	21991.0	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|TIM|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13287973-4	chr8	13287501	13288501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172282)	promoter-TSS (NM_172282)	-12.0	NM_172282	234076.0	Mm.219813	NM_172282	ENSMUSG00000038497	Tmco3	B230339H12Rik|C87304	transmembrane and coiled-coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127769081-4	chr7	127768616	127769616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198424)	promoter-TSS (NM_198424)	-699.0	NM_198424	269999.0	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10688731-4	chr19	10688219	10689219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361963)	promoter-TSS (NM_001361963)	-16.0	NM_181403	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-28262482-2	chr6	28261988	28262988	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001081678)	promoter-TSS (NM_001081678)	-887.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-85288567-4	chr13	85288077	85289077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145452, exon 1 of 25)	exon (NM_145452, exon 1 of 25)	909.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-22822488-4	chr2	22821993	22822993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 3 of 13)	intron (NM_019456, intron 3 of 13)	48166.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116443485-4	chr7	116442994	116443994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011083)	promoter-TSS (NM_011083)	-36.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-115716424-4	chr3	115715926	115716926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1371.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.0	3.5	1.5	4.0	11.0	3.0
Merged-chr5-123025434-4	chr5	123024932	123025932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175423, intron 1 of 1)	intron (NM_175423, intron 1 of 1)	10358.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	20.0	31.0	30.0	15.5	27.0	21.5
Merged-chr8-46888751-4	chr8	46888208	46889208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98179.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63738220-4	chr9	63737711	63738711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	MTEa|LTR|ERVL-MaLR	19783.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51921921-4	chr11	51921427	51922427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-45704.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35257595-4	chr17	35257097	35258097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-5497.0	NM_010380	14964.0	Mm.439675	NM_010380	ENSMUSG00000073411	H2-D1	H-2D|H2-D	histocompatibility 2, D region locus 1	protein-coding	201.5	474.0	341.5	213.0	355.5	374.5
Merged-chr3-96708506-4	chr3	96708020	96709020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030094)	promoter-TSS (NM_030094)	40.0	NM_001162925	78373.0	Mm.423186	NM_030094	ENSMUSG00000028100	Nudt17	2410015C20Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-19584858-2	chr4	19584358	19585358	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025476, intron 2 of 9)	intron (NM_025476, intron 2 of 9)	9792.0	NM_025476	66302.0	Mm.440686	NM_025476	ENSMUSG00000028229	Rmdn1	Fam82b|RMD-1	regulator of microtubule dynamics 1	protein-coding	4.0	3.0	3.0	6.5	0.0	1.0
Merged-chr17-24351077-2	chr17	24350577	24351577	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013855)	promoter-TSS (NM_013855)	-946.0	NM_013855	27410.0	Mm.239470	NM_013855	ENSMUSG00000024130	Abca3	1810036E22Rik|ABC-C|Abc3	ATP-binding cassette, sub-family A (ABC1), member 3	protein-coding	11.5	40.5	36.5	1.5	26.0	3.5
Merged-chr13-49208049-2	chr13	49207549	49208549	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026738, exon 2 of 6)	exon (NM_026738, exon 2 of 6)	7977.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111119385-4	chr9	111118887	111119887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027742, intron 1 of 13)	intron (NM_027742, intron 1 of 13)	1276.0	NM_001164838	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132224483-4	chr2	132223981	132224981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23307.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23369241-4	chr13	23368700	23369700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172586)	promoter-TSS (NM_172586)	8.0	NM_001286156	218100.0	Mm.286454	NM_172586	ENSMUSG00000046351	Zfp322a	Znf322|Znf322a	zinc finger protein 322A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-26606726-4	chr19	26606242	26607242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011416, intron 1 of 32)	CpG	1582.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	8.5	21.5	27.5	4.5	49.5	19.0
Merged-chr2-118972889-4	chr2	118972380	118973380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	46383.0	NM_028117	72136.0	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	7.5	0.0	2.0	4.5	2.5	0.0
Merged-chr3-58416508-4	chr3	58416022	58417022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081229, exon 1 of 4)	exon (NM_001081229, exon 1 of 4)	1802.0	NM_001347233	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3907068-4	chr19	3906569	3907569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167784)	promoter-TSS (NM_001167784)	64.0	NM_001136091	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20249508-4	chr11	20249015	20250015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172260)	promoter-TSS (NM_172260)	-91.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	40.5	72.5	58.5	34.5	29.0	59.5
Merged-chr18-77714038-4	chr18	77713523	77714523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178670)	promoter-TSS (NM_178670)	-13.0	NM_178670	212163.0	Mm.23293	NM_178670	ENSMUSG00000047466	8030462N17Rik	Akd2|Ark2N	RIKEN cDNA 8030462N17 gene	protein-coding	51.5	109.0	92.5	46.5	171.0	130.5
Merged-chr1-80659651-4	chr1	80659161	80660161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	5691.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-5061402-7	chr7	5060888	5061888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133671)	promoter-TSS (NM_133671)	-755.0	NM_133671	22185.0	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	48.0	153.0	80.0	56.0	132.5	89.5
Merged-chr11-4661587-4	chr11	4661109	4662109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029291, intron 8 of 19)	intron (NM_029291, intron 8 of 19)	23816.0	NM_029291	75452.0	Mm.439906	NM_029291	ENSMUSG00000020412	Ascc2	1700011I11Rik|2610034L15Rik|AI482016|ASC1p100|AW046480	activating signal cointegrator 1 complex subunit 2	protein-coding	8.5	28.5	40.0	21.0	30.0	43.0
Merged-chr8-106619730-2	chr8	106619230	106620230	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009864, intron 2 of 15)	intron (NM_009864, intron 2 of 15)	16380.0	NM_009864	12550.0	Mm.35605	NM_009864	ENSMUSG00000000303	Cdh1	AA960649|ARC-1|E-cad|Ecad|L-CAM|UVO|Um	cadherin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5786660-4	chr19	5786148	5787148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9333.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4919494-3	chr2	4919044	4920044	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010726, intron 1 of 8)	intron (NM_010726, intron 1 of 8)	548.0	NM_010726	16922.0	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	54.0	141.5	98.0	159.0	336.0	272.0
Merged-chr12-52314997-2	chr12	52314497	52315497	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	165612.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	1.5	2.5	3.5	1.0	1.0	5.5
Merged-chr1-162625505-4	chr1	162624957	162625957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13693.0	NM_010865	17926.0	Mm.10694	NM_010865	ENSMUSG00000026697	Myoc	AI957332|GLC1A|TIGR	myocilin	protein-coding	90.0	136.0	163.5	139.5	319.5	225.5
Merged-chr6-131353738-4	chr6	131353242	131354242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34708.0	NM_139117	56449.0	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	4.0	1.0	10.0	5.0	3.5	7.5
Merged-chr1-172497781-1	chr1	172497281	172498281	+	1000.0	f1_balb.idr	intron (NM_033608, intron 19 of 20)	intron (NM_033608, intron 19 of 20)	-2465.0	NM_178598	21346.0	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	6.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77606135-4	chr10	77605633	77606633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_125904)	promoter-TSS (NR_125904)	36.0	NM_019929	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-46107495-4	chr10	46107014	46108014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137234.0	NR_028274	100302593.0		NR_028274	ENSMUSG00000095118	Snord14d	Gm23710	small nucleolar RNA, C/D box 14D	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80640001-4	chr7	80639498	80640498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040343, intron 4 of 4)	intron (NR_040343, intron 4 of 4)	3981.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	2.5	20.5	7.0	6.0	10.0	5.5
Merged-chr12-4082838-4	chr12	4082267	4083267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_153082, exon 1 of 7)	5' UTR (NM_153082, exon 1 of 7)	193.0	NM_153082	217378.0	Mm.271656	NM_153082	ENSMUSG00000020657	Dnajc27	AI639580|C330021A05Rik|Rabj|Rbj	DnaJ heat shock protein family (Hsp40) member C27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33950331-4	chr16	33949823	33950823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010580)	TTS (NM_010580)	16715.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108213060-4	chr6	108212559	108213559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010585)	promoter-TSS (NM_010585)	-37.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	0.0	4.0	4.5	0.5	4.5	3.0
Merged-chr15-38278301-4	chr15	38277831	38278831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21569.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-44459222-4	chr17	44458725	44459725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamRep564|Unknown|Unknown	270653.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-135659198-2	chr2	135658698	135659698	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013829)	promoter-TSS (NM_013829)	-349.0	NM_001355155	18798.0	Mm.38009	NM_013829	ENSMUSG00000039943	Plcb4	A930039J07Rik|AI854601|C230058B11Rik	phospholipase C, beta 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-85432023-4	chr6	85431570	85432570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144918)	promoter-TSS (NM_144918)	94.0	NM_144918	232187.0	Mm.219946	NM_144918	ENSMUSG00000033706	Smyd5	AW536703|NN8-4AG|Rai15|Rrg1	SET and MYND domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102150896-4	chr15	102150407	102151407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146064, intron 1 of 14)	intron (NM_146064, intron 1 of 14)	332.0	NM_146064	223920.0	Mm.358862	NM_146064	ENSMUSG00000023045	Soat2	ACAT2|D15Wsu97e	sterol O-acyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94392931-4	chr11	94392439	94393439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029600)	promoter-TSS (NM_029600)	37.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	24.0	64.5	48.0	27.0	77.0	56.5
Merged-chr1-191200339-2	chr1	191199839	191200839	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-17006.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117783851-4	chr11	117783316	117784316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001195088, exon 4 of 16)	exon (NM_001195088, exon 4 of 16)	1158.0	NM_001195088	217356.0	Mm.116675	NM_181856	ENSMUSG00000050106	Tmc8	EVIN2|Ever2|mFLJ00400	transmembrane channel-like gene family 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-137942400-4	chr3	137941918	137942918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 4 of 8)	intron (NM_011932, intron 4 of 8)	23863.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111686265-4	chr13	111685771	111686771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172593)	promoter-TSS (NM_172593)	93.0	NM_172593	218613.0	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32239125-1	chr4	32238625	32239625	+	1000.0	f0_c57.idr	Intergenic	CpG	-178310.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.0	2.5	10.0	0.0	2.5	9.5
Merged-chr9-111057498-4	chr9	111057012	111058012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302376)	promoter-TSS (NM_001302376)	6.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	175.0	449.5	269.0	218.5	438.0	351.0
Merged-chr9-37347250-4	chr9	37346744	37347744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081429, intron 2 of 15)	intron (NM_001081429, intron 2 of 15)	1148.0	NM_001081429	245902.0	Mm.390150	NM_001081429	ENSMUSG00000034303	Ccdc15	A630039F14Rik|D030074L19	coiled-coil domain containing 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147748197-4	chr5	147747682	147748682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22194.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	0.5	0.0	0.0	0.0	0.0	0.5
Merged-chr9-72111901-4	chr9	72111389	72112389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253862)	promoter-TSS (NM_001253862)	-70.0	NM_011544	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0.5	2.0	4.5	0.0	6.0	3.5
Merged-chr19-5023767-5	chr19	5023303	5024303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007854)	promoter-TSS (NM_007854)	-203.0	NM_007854	13340.0	Mm.4930	NM_007854	ENSMUSG00000024891	Slc29a2	Der12|Ent2|Hnp36	solute carrier family 29 (nucleoside transporters), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172456137-4	chr1	172455648	172456648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19212.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	15.5	30.0	64.0	29.5	72.5	54.5
Merged-chr11-83964371-4	chr11	83963867	83964867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194341)	promoter-TSS (NM_194341)	-64.0	NM_194341	217030.0	Mm.82680	NM_194341	ENSMUSG00000034940	Synrg	Ap1gbp1|SYNG	synergin, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97251824-4	chr7	97251340	97252340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 2 of 9)	intron (NM_001162477, intron 2 of 9)	74124.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	4.5	17.0	8.0	2.5	11.5	16.5
Merged-chr11-4187169-2	chr11	4186669	4187669	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	CpG	336.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92180440-4	chr1	92179874	92180874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207225)	promoter-TSS (NM_207225)	-33.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46844786-4	chr8	46844308	46845308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 6 of 7)	intron (NR_152560, intron 6 of 7)	105063.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40873450-4	chr19	40872955	40873955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045343, intron 1 of 4)	CpG	5139.0	NR_045343	381223.0	Mm.136844	NR_045343		E030044B06Rik	E030007J07Rik|Gm1618	RIKEN cDNA E030044B06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49272437-4	chr13	49271938	49272938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 14 of 17)	intron (NM_015759, intron 14 of 17)	-23732.0	NM_028340	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180777825-4	chr1	180777301	180778301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	35804.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76710618-2	chr12	76710118	76711118	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013675)	promoter-TSS (NM_013675)	-71.0	NM_013675	20741.0	Mm.32881	NM_013675	ENSMUSG00000021061	Sptb	AI842465|D330027P03Rik|Gm1301|Spnb-1|Spnb1|ja|jaundiced|mKIAA4219	spectrin beta, erythrocytic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5784146-4	chr17	5783631	5784631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14526.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-104110285-4	chr2	104109784	104110784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007652, intron 2 of 3)	intron (NM_007652, intron 2 of 3)	-12485.0	NM_026634	68243.0	Mm.158191	NM_026634	ENSMUSG00000032671	A930018P22Rik	-	RIKEN cDNA A930018P22 gene	protein-coding	0.0	3.0	1.5	0.0	2.0	3.5
Merged-chr6-88108225-4	chr6	88107706	88108706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3948.0	NR_105795	102465196.0		NR_105795	ENSMUSG00000099095	Mir6376	Gm27778|mmu-mir-6376	microRNA 6376	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21453645-4	chr13	21453156	21454156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013786)	promoter-TSS (NM_001013786)	71.0	NM_001013786	432731.0	Mm.390557	NM_001013786	ENSMUSG00000022228	Zscan26	BC068174|Zfp187|Znf187	zinc finger and SCAN domain containing 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95882434-4	chr3	95881934	95882934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033302)	promoter-TSS (NM_001033302)	-206.0	NM_001033302	229599.0	Mm.331218	NM_001033302	ENSMUSG00000038550	Ciart	Chrono|Gm129	circadian associated repressor of transcription	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-26799043-4	chr10	26798553	26799553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	26541.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10839690-4	chr19	10839203	10840203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2841.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114682791-2	chr11	114682291	114683291	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	7323.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25283960-4	chr12	25283475	25284475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	154801.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	32.0	56.5	41.5	38.0	58.5	38.5
Merged-chr10-61423029-4	chr10	61422546	61423546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013611, exon 2 of 3)	exon (NM_013611, exon 2 of 3)	5074.0	NM_013611	18119.0	Mm.57195	NM_013611	ENSMUSG00000037171	Nodal	Tg.413d	nodal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19358903-2	chr7	19358403	19359403	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145822, intron 2 of 2)	B1_Mur4|SINE|Alu	580.0	NM_145822	70333.0	Mm.171370	NM_145822	ENSMUSG00000047649	Cd3eap	1190028F09|2610103M17Rik|ASE-1|Ase1|CAST|PAF49	CD3E antigen, epsilon polypeptide associated protein	protein-coding	5.0	6.0	2.0	0.0	0.0	1.5
Merged-chr5-3802310-2	chr5	3801810	3802810	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033173)	promoter-TSS (NR_033173)	814.0	NM_001289528	70797.0	Mm.130148	NM_001003909	ENSMUSG00000040351	Ankib1	2310061P20Rik|4631416I11Rik|AW494740|C80642|mKIAA1386	ankyrin repeat and IBR domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123021319-4	chr9	123020849	123021849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025339)	promoter-TSS (NM_025339)	23.0	NM_001164823	66079.0	Mm.482265	NM_025339	ENSMUSG00000066233	Tmem42	0610027O18Rik|4933429E06Rik|AV003444|D9Ertd662e	transmembrane protein 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95384666-5	chr11	95384250	95385250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357797)	promoter-TSS (NM_001357797)	-106.0	NM_016752	110172.0	Mm.4593	NM_016752	ENSMUSG00000020873	Slc35b1	UGTrel1|Ugalt2	solute carrier family 35, member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-103425164-4	chr5	103424663	103425663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011204)	promoter-TSS (NM_011204)	-29.0	NM_011204	19249.0	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122562682-4	chr10	122562173	122563173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7218.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	68.0	177.0	165.5	49.0	146.5	104.0
Merged-chr5-144254961-7	chr5	144254411	144255411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018772)	promoter-TSS (NM_018772)	-314.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	32.5	130.0	47.5	10.0	40.0	25.0
Merged-chr3-121953199-4	chr3	121952708	121953708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172525)	promoter-TSS (NM_172525)	-21.0	NM_172525	214137.0	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46253868-4	chr17	46253389	46254389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111142)	promoter-TSS (NM_001111142)	-276.0	NM_001111142	224813.0	Mm.70999	NM_001111142	ENSMUSG00000071073	Lrrc73	Gm88	leucine rich repeat containing 73	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119994355-2	chr9	119993855	119994855	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9613.0	NM_153287	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	2.0	0.0	0.0	2.0	0.0	0.0
Merged-chr17-31520058-4	chr17	31519548	31520548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030087)	promoter-TSS (NM_030087)	-67.0	NM_030087	78330.0	Mm.28349	NM_030087	ENSMUSG00000024038	Ndufv3	1500032D16Rik	NADH dehydrogenase (ubiquinone) flavoprotein 3	protein-coding	8.5	22.5	10.0	15.5	10.5	16.5
Merged-chr10-87830868-4	chr10	87830353	87831353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A|LTR|ERVL	-27412.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81741224-4	chr13	81740717	81741717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028372, intron 1 of 1)	intron (NM_028372, intron 1 of 1)	29800.0	NM_028372	72852.0	Mm.31095	NM_028372	ENSMUSG00000051098	Mblac2	2900024O10Rik	metallo-beta-lactamase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103419360-4	chr11	103418860	103419860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6696.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	95.0	244.0	242.5	111.0	315.5	258.0
Merged-chr16-43364317-4	chr16	43363829	43364829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	55867.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121880615-1	chr14	121880115	121881115	+	1000.0	f1_c57bl6.idr	intron (NM_026861, intron 1 of 8)	intron (NM_026861, intron 1 of 8)	-1207.0	NR_130999	78312.0	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	1.0	2.0	2.0	4.0	10.5	0.5
Merged-chr12-80132766-4	chr12	80132282	80133282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033514)	promoter-TSS (NR_033514)	62.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0.0	0.0	2.0	0.0	11.5	0.0
Merged-chr13-93237815-4	chr13	93237311	93238311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45394.0	NM_001361537	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	36.0	66.5	49.5	21.5	67.5	41.0
Merged-chr11-74494587-4	chr11	74494094	74495094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	95564.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128747689-4	chr2	128747207	128748207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 4 of 18)	intron (NM_008587, intron 4 of 18)	48792.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	39.0	115.5	93.5	69.0	191.0	129.0
Merged-chr7-19076077-4	chr7	19075559	19076559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010058)	promoter-TSS (NM_010058)	-141.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	13.0	21.5	22.5	5.0	31.5	6.5
Merged-chr18-12741283-4	chr18	12740777	12741777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181731)	promoter-TSS (NM_181731)	-78.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12204961-4	chr15	12204452	12205452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172958)	promoter-TSS (NM_172958)	-76.0	NM_001356498	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84705520-2	chr8	84705020	84706020	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008535)	TTS (NM_008535)	4063.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118476890-4	chr11	118476402	118477402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359368)	promoter-TSS (NM_001359368)	70.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-20064443-1	chr1	20063943	20064943	+	1000.0	f0_balb.idr	intron (NM_153179, intron 66 of 66)	intron (NM_153179, intron 66 of 66)	-292011.0	NR_045734	75028.0	Mm.417820	NR_045734	ENSMUSG00000089914	4930486I03Rik	-	RIKEN cDNA 4930486I03 gene	ncRNA	4.5	0.0	4.0	9.0	5.0	0.5
Merged-chr5-105558787-4	chr5	105558292	105559292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	39321.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-94079304-4	chr1	94078814	94079814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26761.0	NM_008798	18566.0	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18676719-4	chr2	18676246	18677246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007552)	promoter-TSS (NM_007552)	-272.0	NM_007552	12151.0	Mm.289584	NM_007552	ENSMUSG00000026739	Bmi1	AW546694|Bmi-1|Pcgf4	Bmi1 polycomb ring finger oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44135825-4	chr19	44135323	44136323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356578)	promoter-TSS (NM_001356578)	53.0	NM_001081077	72502.0	Mm.276109	NM_001081077	ENSMUSG00000025200	Cwf19l1	-	CWF19-like 1, cell cycle control (S. pombe)	protein-coding	7.0	1.5	9.0	6.0	1.5	9.5
Merged-chr8-111992270-4	chr8	111991767	111992767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357186)	promoter-TSS (NM_001357186)	35.0	NM_001357184	30947.0	Mm.282162	NM_013925	ENSMUSG00000031949	Adat1	MMADAT1	adenosine deaminase, tRNA-specific 1	protein-coding	17.5	44.0	43.0	3.5	23.0	15.5
Merged-chr3-108389379-4	chr3	108388868	108389868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5530.0	NM_019976	56742.0	Mm.389499	NM_019976	ENSMUSG00000068744	Psrc1	5430413I02Rik|AL033312|Dda3	proline/serine-rich coiled-coil 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172590608-4	chr1	172590105	172591105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029084)	promoter-TSS (NM_029084)	-37.0	NM_029084	74748.0	Mm.179812	NM_029084	ENSMUSG00000053318	Slamf8	5830408F06Rik|Blame|SBBI42	SLAM family member 8	protein-coding	53.0	84.5	82.5	49.0	81.0	45.5
Merged-chr19-46486881-4	chr19	46486390	46487390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_015752, exon 12 of 12)	3' UTR (NM_015752, exon 12 of 12)	-14758.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-89092902-4	chr11	89092393	89093393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033266, exon 4 of 4)	3' UTR (NM_001033266, exon 4 of 4)	19052.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	101.5	244.5	154.5	114.0	212.5	125.0
Merged-chr12-85345712-4	chr12	85345209	85346209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 3 of 4)	intron (NM_026775, intron 3 of 4)	-6347.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43474725-4	chr1	43474222	43475222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	28971.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30626412-5	chr14	30625884	30626884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011103)	promoter-TSS (NM_011103)	-176.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87914648-3	chr6	87914132	87915132	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_173737, exon 2 of 7)	exon (NM_173737, exon 2 of 7)	656.0	NM_173737	232210.0	Mm.246241	NM_173737	ENSMUSG00000030060	Hmces	8430410A17Rik|C85376	5-hydroxymethylcytosine (hmC) binding, ES cell specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84958562-4	chr17	84958038	84959038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027930)	promoter-TSS (NR_027930)	537.0	NM_001159496	19043.0	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24455389-4	chr17	24454936	24455936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007893)	promoter-TSS (NM_007893)	-44.0	NR_125990	13560.0	Mm.163132	NM_007893	ENSMUSG00000024137	E4f1	p120E4F|phi-AP3	E4F transcription factor 1	protein-coding	179.5	497.5	281.5	285.5	399.0	319.5
Merged-chr14-30613554-4	chr14	30613049	30614049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	-3239.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	22.0	54.0	43.0	29.0	57.0	45.0
Merged-chr17-34132824-2	chr17	34132324	34133324	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360530, intron 1 of 5)	B1_Mm|SINE|Alu	7306.0	NM_001360530	14998.0	Mm.16373	NM_010386	ENSMUSG00000037649	H2-DMa	H-2Ma|H2-Ma	histocompatibility 2, class II, locus DMa	protein-coding	1.5	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30658604-4	chr2	30658109	30659109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_136917, exon 4 of 4)	non-coding (NR_136917, exon 4 of 4)	19402.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-85285607-3	chr16	85285102	85286102	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111895.0	NM_001198826	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	19.5	58.5	24.0	25.0	38.5	6.5
Merged-chr9-85327820-4	chr9	85327321	85328321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160378)	promoter-TSS (NM_001160378)	-671.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	136.0	312.0	169.0	158.0	328.5	184.0
Merged-chr11-119491432-4	chr11	119490943	119491943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153849)	promoter-TSS (NR_153849)	96.0	NM_001164636	338371.0	Mm.271946	NM_177394	ENSMUSG00000039850	Endov	A730011L01Rik	endonuclease V	protein-coding	122.5	182.0	123.5	128.5	181.5	140.0
Merged-chr15-63500575-4	chr15	63500070	63501070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20962.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	14.0	60.5	30.5	30.0	19.0	35.5
Merged-chr8-22593889-4	chr8	22593403	22594403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198998)	promoter-TSS (NM_001198998)	-90.0	NM_011696	22335.0	Mm.227704	NM_011696	ENSMUSG00000008892	Vdac3	-	voltage-dependent anion channel 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13300395-4	chr10	13299891	13300891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	23898.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	145.5	276.5	244.5	142.0	309.5	220.0
Merged-chr2-71055692-4	chr2	71055194	71056194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145524)	promoter-TSS (NM_145524)	-50.0	NM_001165982	75763.0	Mm.281668	NM_198005	ENSMUSG00000041966	Dcaf17	2810055O12Rik|4833418A01Rik|A030004A10Rik|A930009G19Rik|AI448937	DDB1 and CUL4 associated factor 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-27128705-4	chr8	27128211	27129211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025686)	promoter-TSS (NM_025686)	-79.0	NM_025686	66653.0	Mm.334467	NM_025686	ENSMUSG00000031487	Brf2	2700059M06Rik|5730512K07Rik|AU018504|AU022602|BRFU|TFIIIB50	BRF2, RNA polymerase III transcription initiation factor 50kDa subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155054874-4	chr1	155054431	155055431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(G)n|Simple_repeat|Simple_repeat	28333.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56462414-6	chr17	56461925	56462925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252456)	promoter-TSS (NM_001252456)	-204.0	NM_001252456	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59810382-2	chr11	59809882	59810882	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271356)	promoter-TSS (NM_001271356)	302.0	NR_045686	100504104.0	Mm.391737	NR_045686	ENSMUSG00000087249	Gm16062	-	predicted gene 16062	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103020463-4	chr3	103019956	103020956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144901)	promoter-TSS (NM_144901)	-90.0	NM_001310693	229663.0	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101645585-4	chr11	101645064	101646064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17615.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134035755-4	chr6	134035320	134036320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007961, exon 1 of 8)	5' UTR (NM_007961, exon 1 of 8)	120.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	206.5	525.0	432.5	191.5	430.0	386.5
Merged-chr16-37539792-4	chr16	37539291	37540291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028812)	promoter-TSS (NM_028812)	-2.0	NM_001355727	74197.0	Mm.287795	NM_028812	ENSMUSG00000022828	Gtf2e1	2610024P03Rik|56kDa|AI303800|FE|TFIIE-A	general transcription factor II E, polypeptide 1 (alpha subunit)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115513447-3	chr5	115512955	115513955	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	ID_B1|SINE|B4	6779.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	171.0	407.0	236.5	285.5	664.5	515.0
Merged-chr4-145252774-4	chr4	145252277	145253277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5907.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17584159-4	chr6	17583675	17584675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52835.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0.0	9.0	1.0	0.0	0.5	0.5
Merged-chr3-104996626-2	chr3	104996126	104997126	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-34917.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21185776-2	chr5	21185276	21186276	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175437)	promoter-TSS (NM_175437)	-491.0	NR_153365	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85029376-2	chr8	85028876	85029876	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026760, intron 1 of 2)	intron (NM_026760, intron 1 of 2)	2543.0	NM_026760	68544.0	Mm.196005	NM_026760	ENSMUSG00000041203	Trir	1110002H14Rik|2310036O22Rik|AI854688	telomerase RNA component interacting RNase	protein-coding	0.0	1.0	1.0	0.0	0.0	1.0
Merged-chr15-83122812-4	chr15	83122305	83123305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029101)	promoter-TSS (NM_029101)	-4.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128065784-4	chr7	128065275	128066275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008401, intron 2 of 29)	Lx8b|LINE|L1	3135.0	NM_008401	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-33997710-2	chr11	33997210	33998210	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-4517.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19935432-8	chr7	19934937	19935937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	-14294.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-129574691-4	chr7	129574195	129575195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17168.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55743632-4	chr19	55743113	55744113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 3 of 15)	intron (NR_138565, intron 3 of 15)	1803.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83710621-2	chr6	83710121	83711121	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011912)	promoter-TSS (NM_011912)	204.0	NR_075094	574519.0	Mm.487605	NR_002871	ENSMUSG00000085794	Vax2os	Vas2os|Vax2os1|Vax2os2	ventral anterior homeobox 2, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78429065-2	chr9	78428565	78429565	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14172.0	NR_125721	214763.0	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98512110-2	chr15	98511610	98512610	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	7724.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91293919-3	chr1	91293424	91294424	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4414.0	NM_016717	50880.0	Mm.25724	NM_016717	ENSMUSG00000026307	Scly	9830169H08|A930015N15Rik|SCL|Scly1|Scly2	selenocysteine lyase	protein-coding	4.0	4.0	4.5	5.5	1.5	13.0
Merged-chr1-136135210-4	chr1	136134698	136135698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	3808.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-115315531-4	chr10	115315027	115316027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024454)	promoter-TSS (NM_024454)	64.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30063309-4	chr16	30062812	30063812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2045.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-130900329-4	chr3	130899840	130900840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-169942.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-113751870-4	chr11	113751375	113752375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020006)	promoter-TSS (NM_020006)	-60.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100187591-4	chr12	100187102	100188102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045282)	promoter-TSS (NR_045282)	-366.0	NR_045282	100038378.0	Mm.387075	NR_045282	ENSMUSG00000072884	Gm10433	-	predicted gene 10433	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120187801-4	chr6	120187294	120188294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-6029.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117476037-4	chr8	117475527	117476527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16762.0	NR_106046	102465653.0		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-183299346-4	chr1	183298834	183299834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181732, intron 1 of 9)	RLTR33|LTR|ERVK	-2041.0	NR_151660	71678.0	Mm.392270	NM_027861	ENSMUSG00000046836	Brox	0610010K06Rik	BRO1 domain and CAAX motif containing	protein-coding	0.5	2.5	0.5	0.5	2.5	0.5
Merged-chr8-27261258-4	chr8	27260766	27261766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007918, intron 1 of 2)	intron (NM_007918, intron 1 of 2)	939.0	NM_007918	13685.0	Mm.6700	NM_007918	ENSMUSG00000031490	Eif4ebp1	4e-bp1|AA959816|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34317581-4	chr6	34317085	34318085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009658)	promoter-TSS (NM_009658)	-96.0	NM_009658	11677.0	Mm.451	NM_009658	ENSMUSG00000001642	Akr1b3	ALR2|AR|Ahr-1|Ahr1|Akr1b1|Aldor1|Aldr1	aldo-keto reductase family 1, member B3 (aldose reductase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141376617-2	chr7	141376117	141377117	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11507.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-4858121-1	chr1	4857621	4858621	+	1000.0	f0_balb.idr	promoter-TSS (NM_001159751)	promoter-TSS (NM_001159751)	-207.0	NM_001159751	21399.0	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102189612-4	chr11	102189095	102190095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175935)	promoter-TSS (NM_175935)	-104.0	NM_175935	68401.0	Mm.22385	NM_175935	ENSMUSG00000034793	G6pc3	0710001K01Rik|AU019276|AU045429|AV128920|AW545836|UGRP	glucose 6 phosphatase, catalytic, 3	protein-coding	29.0	66.0	84.0	32.0	57.5	90.0
Merged-chr14-67188988-4	chr14	67188489	67189489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44303.0	NM_010095	13592.0	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	17.5	60.0	51.0	31.0	71.0	42.5
Merged-chr2-121140527-4	chr2	121140044	121141044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177846, exon 1 of 1)	exon (NM_177846, exon 1 of 1)	116.0	NM_001290812	75894.0	Mm.384805	NM_029475	ENSMUSG00000027259	Adal	4930578F03Rik	adenosine deaminase-like	protein-coding	149.5	371.0	281.5	148.5	246.0	190.5
Merged-chr11-116030355-5	chr11	116029889	116030889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172569)	promoter-TSS (NM_172569)	73.0	NM_172569	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34932743-2	chr17	34932243	34933243	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010893, exon 3 of 6)	exon (NM_010893, exon 3 of 6)	1490.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54958759-2	chr11	54958259	54959259	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199275, intron 1 of 18)	intron (NM_001199275, intron 1 of 18)	4181.0	NM_021327	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-3270997-4	chr15	3270486	3271486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009155)	promoter-TSS (NM_009155)	9.0	NM_009155	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23585971-4	chr13	23585463	23586463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290530)	promoter-TSS (NM_001290530)	7.0	NM_001290530	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111300346-4	chr8	111299832	111300832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146218)	promoter-TSS (NM_146218)	-110.0	NM_146218	234736.0	Mm.334816	NM_146218	ENSMUSG00000033596	Rfwd3	BC027246	ring finger and WD repeat domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28338840-4	chr7	28338344	28339344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013676)	promoter-TSS (NM_013676)	-125.0	NM_013676	20924.0	Mm.285906	NM_013676	ENSMUSG00000003435	Supt5	AL033283|AL033321|AU019549|Spt5|Supt5h	suppressor of Ty 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141172831-4	chr7	141172327	141173327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172100)	promoter-TSS (NM_001172100)	24.0	NM_001172100	107702.0	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64304626-2	chr1	64304126	64305126	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-183237.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19676013-4	chr7	19675502	19676502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001309799, intron 1 of 3)	intron (NM_001309799, intron 1 of 3)	1939.0	NM_001277944	11813.0	Mm.28394	NM_001277944	ENSMUSG00000002992	Apoc2	apo-CII|apoC-II	apolipoprotein C-II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-118380673-5	chr5	118380188	118381188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	135461.0	NM_001081236	76792.0	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8920427-4	chr19	8919935	8920935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024256)	promoter-TSS (NM_024256)	42.0	NM_024256	72727.0	Mm.259	NM_024256	ENSMUSG00000071649	B3gat3	2810405M13Rik	beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-104867740-4	chr14	104867238	104868238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015593, intron 2 of 5)	intron (NR_015593, intron 2 of 5)	228591.0	NR_015593	320249.0	Mm.320725	NR_015593	ENSMUSG00000115432	D130009I18Rik	-	RIKEN cDNA D130009I18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77291269-4	chr10	77290771	77291771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_004429, exon 11 of 11)	non-coding (NR_004429, exon 11 of 11)	31971.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30549022-4	chr13	30548515	30549515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3699.0	NM_025710	66694.0	Mm.181933	NM_025710	ENSMUSG00000038462	Uqcrfs1	4430402G14Rik|AI875505	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-90245825-4	chr11	90245342	90246342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3634.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146806060-4	chr5	146805536	146806536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11080.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	35.5	96.0	67.0	39.0	104.5	67.5
Merged-chr13-4662572-4	chr13	4662072	4663072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53408.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-80164977-4	chr9	80164511	80165511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039546)	promoter-TSS (NM_001039546)	-23.0	NM_001039546	17920.0	Mm.4040	NM_008662	ENSMUSG00000033577	Myo6	BC029719|Tlc|sv	myosin VI	protein-coding	18.0	62.0	15.0	11.5	31.0	23.0
Merged-chr14-120394978-4	chr14	120394456	120395456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360379, intron 5 of 6)	intron (NM_001360379, intron 5 of 6)	-83505.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46747426-4	chr17	46746927	46747927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001305988, exon 2 of 5)	exon (NM_001305988, exon 2 of 5)	4787.0	NM_001305989	72029.0	Mm.240325	NM_028065	ENSMUSG00000023973	Cnpy3	1600025D17Rik|2410050O22Rik|AI413153|CAG4A|ERDA5|PRAT4A|Tnrc5	canopy FGF signaling regulator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-10430825-4	chr14	10430324	10431324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 4 of 9)	intron (NM_001360141, intron 4 of 9)	22634.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81320745-4	chr10	81320217	81321217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027381)	promoter-TSS (NM_027381)	-386.0	NM_027381	70312.0	Mm.87628	NM_027381	ENSMUSG00000034889	Cactin	2510012J08Rik	cactin, spliceosome C complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133804619-4	chr4	133804114	133805114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51003.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	81.5	204.0	112.5	84.0	215.5	156.5
Merged-chr2-98662633-4	chr2	98662128	98663128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	SYNREP_MM|Satellite|Satellite	1194971.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44383155-4	chr10	44382663	44383663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23487.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95955897-4	chr16	95955394	95956394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26817.0	NR_040484	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-74944250-4	chr5	74943754	74944754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4940.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129500921-4	chr4	129500421	129501421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	9731.0	NM_001085491	68233.0	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	104.5	296.5	149.5	124.0	247.5	147.5
Merged-chr2-30587403-4	chr2	30586919	30587919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7625.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102455879-4	chr12	102455371	102456371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13263.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	195.0	490.0	472.0	181.0	475.5	299.0
Merged-chr7-80261213-4	chr7	80260724	80261724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028053)	promoter-TSS (NR_028053)	9.0	NM_031375	83485.0	Mm.21175	NM_031375	ENSMUSG00000047084	Ngrn	AW552001	neugrin, neurite outgrowth associated	protein-coding	32.0	85.5	84.0	50.5	71.5	66.0
Merged-chr14-14702823-4	chr14	14702336	14703336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360516)	promoter-TSS (NM_001360516)	-189.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-94665421-4	chr9	94664921	94665921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4471.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	0.0	0.5	0.5	0.0	0.0	0.5
Merged-chr16-31948435-6	chr16	31947904	31948904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026554)	promoter-TSS (NM_026554)	117.0	NR_027897	106264.0	Mm.347369	NM_025320	ENSMUSG00000107002	0610012G03Rik	AI839730	RIKEN cDNA 0610012G03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-110541884-4	chr13	110541385	110542385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	146841.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	1.5	9.0	7.5	2.5	2.0	6.0
Merged-chr6-72538903-4	chr6	72538406	72539406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5485.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108448579-4	chr6	108448081	108449081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-41162.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	45.0	37.0	57.5	45.5	67.0	79.5
Merged-chr2-120348324-4	chr2	120347806	120348806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_147153, intron 2 of 25)	intron (NM_147153, intron 2 of 25)	4827.0	NR_027618	269338.0	Mm.246131	NM_147153	ENSMUSG00000027291	Vps39	A230065P22Rik|AW743070|Vam6|Vam6P|mVam6	VPS39 HOPS complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106511845-4	chr1	106511353	106512353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34778.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0.0	5.0	3.0	4.0	1.0	0.5
Merged-chr10-60253781-2	chr10	60253281	60254281	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	-23847.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34101858-4	chr17	34101319	34102319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6510.0	NR_046183	414076.0	Mm.473092	NR_046183	ENSMUSG00000098197	BC051537	-	cDNA sequence BC051537	ncRNA	136.5	418.5	187.0	31.5	145.0	77.5
Merged-chr8-117256579-4	chr8	117256050	117257050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163262)	promoter-TSS (NM_001163262)	-469.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120504859-4	chr1	120504369	120505369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010766, exon 1 of 17)	5' UTR (NM_010766, exon 1 of 17)	155.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58680083-2	chr1	58679583	58680583	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347056, intron 3 of 13)	ORR1A4|LTR|ERVL-MaLR	12362.0	NM_001347056	108812.0	Mm.442063	NM_175370	ENSMUSG00000047528	Als2cr12	4933405P16Rik|4933425F06Rik	amyotrophic lateral sclerosis 2 chromosome region 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59653899-3	chr15	59653362	59654362	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144549, intron 2 of 2)	intron (NM_144549, intron 2 of 2)	5208.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86726441-4	chr12	86725939	86726939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144524)	promoter-TSS (NM_144524)	21.0	NM_144524	68737.0	Mm.63979	NM_144524	ENSMUSG00000021257	Angel1	1110030H02Rik|mKIAA0759	angel homolog 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-7987103-4	chr14	7986604	7987604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007870, intron 2 of 7)	intron (NM_007870, intron 2 of 7)	7078.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-22041005-1	chr13	22040505	22041505	+	1000.0	f0_balb.idr	TTS (NM_175656)	TTS (NM_175656)	357.0	NM_175656	319158.0	Mm.14775	NM_175656	ENSMUSG00000060639	Hist1h4i	-	histone cluster 1, H4i	protein-coding	38.0	135.5	91.0	63.5	121.5	64.5
Merged-chr12-33083608-4	chr12	33083116	33084116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024478, intron 2 of 19)	intron (NM_001024478, intron 2 of 19)	9259.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107189348-4	chr11	107188840	107189840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161329)	promoter-TSS (NM_001161329)	41.0	NM_133702	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-98082066-4	chr16	98081564	98082564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015491, intron 1 of 4)	intron (NR_015491, intron 1 of 4)	375.0	NR_015491	320586.0	Mm.442230	NR_015491		A630089N07Rik	-	RIKEN cDNA A630089N07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97150124-4	chr11	97149638	97150638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198100)	promoter-TSS (NM_198100)	-426.0	NM_198100	73174.0	Mm.27882	NM_198100	ENSMUSG00000038517	Tbkbp1	3110043L15Rik|ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39493286-4	chr1	39492786	39493786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14531.0	NM_001357521	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149710711-4	chr4	149710206	149711206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9077.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	10.0	34.5	8.0	7.0	29.5	8.0
Merged-chr9-57854468-4	chr9	57853971	57854971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20237.0	NM_019689	56380.0	Mm.425588	NM_019689	ENSMUSG00000004661	Arid3b	Bdp|Dri2	AT rich interactive domain 3B (BRIGHT-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27259704-2	chr7	27259204	27260204	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010950, intron 1 of 9)	intron (NM_010950, intron 1 of 9)	943.0	NM_010950	18223.0	Mm.458153	NM_010950	ENSMUSG00000063160	Numbl	nbl	numb-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-52603284-7	chr12	52602793	52603793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045910)	promoter-TSS (NR_045910)	-971.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	30.5	124.5	100.5	37.5	79.5	48.0
Merged-chr5-100498603-4	chr5	100498096	100499096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001115010)	promoter-TSS (NM_001115010)	-23.0	NM_001115010	231506.0	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-144257273-2	chr5	144256773	144257773	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163709, intron 2 of 2)	intron (NM_001163709, intron 2 of 2)	2048.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	11.0	40.5	32.0	14.5	24.0	26.0
Merged-chr16-8667477-4	chr16	8666970	8667970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025821, intron 1 of 3)	intron (NM_025821, intron 1 of 3)	4683.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-17022512-2	chr7	17022012	17023012	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011155, exon 2 of 13)	exon (NM_011155, exon 2 of 13)	5402.0	NM_011155	19060.0	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	3.0	0.0	5.5	0.0	1.5	3.0
Merged-chr2-14073981-4	chr2	14073445	14074445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038162)	promoter-TSS (NR_038162)	-11.0	NR_038162	70957.0	Mm.399049	NR_038162	ENSMUSG00000086657	Stamos	4921530L18Rik	signal transducing adaptor molecule (SH3 domain and ITAM motif) 1, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-5414602-4	chr15	5414113	5415113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81705.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99211690-4	chr10	99211216	99212216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51515.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38712346-4	chr6	38711850	38712850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 12 of 14)	MIRc|SINE|MIR	49281.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72162268-2	chr8	72161764	72162764	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023126, intron 1 of 7)	intron (NM_023126, intron 1 of 7)	1064.0	NM_023126	17274.0	Mm.162811	NM_023126	ENSMUSG00000003037	Rab8a	AA409338|Mel	RAB8A, member RAS oncogene family	protein-coding	54.0	145.0	114.0	54.5	99.5	89.0
Merged-chr13-15850556-4	chr13	15850057	15851057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155430, intron 3 of 3)	Arthur1|DNA|hAT-Tip100	43314.0	NR_046131	328190.0	Mm.446957	NR_046131	ENSMUSG00000113338	A530046M15Rik	A530046M15	RIKEN cDNA A530046M15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110018718-1	chr7	110018218	110019218	+	1000.0	f0_balb.idr	intron (NM_181517, intron 1 of 24)	CpG	467.0	NM_001362172	233726.0	Mm.222328	NM_181517	ENSMUSG00000066232	Ipo7	A330055O14Rik|C330016G14|Imp7|Ranbp7	importin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-100866215-4	chr9	100865717	100866717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009282, intron 14 of 33)	intron (NM_009282, intron 14 of 33)	168667.0	NM_001311149	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	0.5	1.5	6.5	0.5	1.5	4.0
Merged-chr13-21161367-4	chr13	21160873	21161873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18318.0	NM_146534	258527.0	Mm.271440	NM_146534	ENSMUSG00000045474	Olfr1368	MOR256-15	olfactory receptor 1368	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71475448-4	chr17	71474948	71475948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028887)	promoter-TSS (NM_028887)	-105.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	51.0	110.5	106.5	37.0	92.5	87.0
Merged-chr7-19669097-4	chr7	19668611	19669611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4081.0	NM_019649	56457.0	Mm.290960	NM_019649	ENSMUSG00000002981	Clptm1	HS9|N14	cleft lip and palate associated transmembrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-104508488-4	chr5	104508013	104509013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001166581, exon 1 of 2)	5' UTR (NM_001166581, exon 1 of 2)	161.0	NM_001166581	100042165.0	Mm.482189	NM_001166581	ENSMUSG00000079065	BC005561	-	cDNA sequence BC005561	protein-coding	40.0	50.0	68.0	36.5	44.5	46.0
Merged-chr9-65655650-4	chr9	65655143	65656143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028030, intron 6 of 7)	ID_B1|SINE|B4	-20905.0	NM_010952	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	3.0	1.0	2.0	0.5	0.0	1.5
Merged-chr17-25189097-2	chr17	25188597	25189597	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290736, intron 1 of 14)	intron (NM_001290736, intron 1 of 14)	183.0	NM_001290736	74154.0	Mm.267353	NM_028789	ENSMUSG00000015127	Unkl	1300004G08Rik	unkempt family like zinc finger	protein-coding	0.0	7.5	2.0	0.5	2.5	4.0
Merged-chr8-70527732-4	chr8	70527245	70528245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199631)	promoter-TSS (NM_001199631)	2.0	NM_010223	14232.0	Mm.141864	NM_010223	ENSMUSG00000019428	Fkbp8	38kDa|FKBP-38|FKBP-8|FKBPR38|Fkbp38|mFKBP38	FK506 binding protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130820099-2	chr4	130819599	130820599	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 3 of 4)	intron (NM_011520, intron 3 of 4)	27562.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26140537-4	chr2	26140009	26141009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256522)	promoter-TSS (NM_001256522)	-3.0	NM_001256521	109299.0	Mm.389259	NM_001256521		Tmem250-ps	AI551216|C330006A16Rik	transmembrane protein 250, pseudogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36271330-5	chr17	36270875	36271875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178281)	promoter-TSS (NM_178281)	56.0	NM_001357889	79263.0	Mm.40624	NM_024468	ENSMUSG00000045409	Trim39	1100001D15Rik|E130103K13Rik|RBCC-B30.2|Rnf23|mKIAA4179|tfp	tripartite motif-containing 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20298303-4	chr14	20297805	20298805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359869, intron 3 of 9)	intron (NM_001359869, intron 3 of 9)	3615.0	NR_153364	67725.0	Mm.317636	NM_026341	ENSMUSG00000021809	Nudt13	4933433B15Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65726981-4	chr17	65726484	65727484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	MIR3|SINE|MIR	45768.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46618525-4	chr19	46618037	46619037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177812, intron 2 of 4)	intron (NM_001177812, intron 2 of 4)	-4864.0	NM_001177813	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64152440-4	chr13	64151947	64152947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361047)	promoter-TSS (NM_001361047)	-74.0	NM_001361047	238673.0	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	57.0	126.5	60.5	35.0	68.5	80.5
Merged-chr10-78135244-4	chr10	78134725	78135725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34543.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77606579-4	chr10	77606069	77607069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301671)	promoter-TSS (NM_001301671)	-29.0	NM_001301671	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-21679437-4	chr17	21678934	21679934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001354753)	promoter-TSS (NM_001354753)	-443.0	NM_001354753	100310809.0	Mm.293030	NM_001354753		Gm10509	-	predicted gene 10509	protein-coding	51.0	88.0	93.5	22.5	44.0	38.0
Merged-chr6-134072577-4	chr6	134072087	134073087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	36887.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	41.0	136.5	87.0	55.5	164.5	106.0
Merged-chr7-145293426-4	chr7	145292940	145293940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7469.0	NM_145379	211577.0	Mm.215151	NM_145379	ENSMUSG00000031070	Mrgprf	BC019711|Mgrc|MrgF	MAS-related GPR, member F	protein-coding	18.5	20.5	18.0	15.0	34.5	21.5
Merged-chr2-79757900-3	chr2	79757414	79758414	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290743, intron 3 of 4)	intron (NM_001290743, intron 3 of 4)	50134.0	NM_001290743	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	0.0	0.0	6.0	0.0	4.5	0.0
Merged-chr11-83640363-4	chr11	83639849	83640849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9029.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54306245-4	chr13	54305755	54306755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65094.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164862614-4	chr2	164862105	164863105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4897.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	73.0	87.0	59.5	52.0	72.5	61.5
Merged-chr11-47063957-4	chr11	47063458	47064458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 6 of 7)	intron (NM_011891, intron 6 of 7)	253159.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	72.0	93.0	100.0	51.5	80.5	96.5
Merged-chr11-50224616-4	chr11	50224105	50225105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145926)	promoter-TSS (NM_145926)	-730.0	NM_145926	103534.0	Mm.86759	NM_145926	ENSMUSG00000036620	Mgat4b	AA407995|GnTIVb	mannoside acetylglucosaminyltransferase 4, isoenzyme B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-125388765-7	chr10	125388268	125389268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59805.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-33213496-2	chr18	33212984	33213984	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001347624, intron 1 of 5)	intron (NM_001347624, intron 1 of 5)	378.0	NM_133774	170459.0	Mm.127058	NM_133774	ENSMUSG00000024378	Stard4	4632419C16Rik|9030213J02Rik	StAR-related lipid transfer (START) domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr10-60705382-4	chr10	60704906	60705906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8916.0	NM_023370	22295.0	Mm.440327	NM_023370	ENSMUSG00000012819	Cdh23	4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v	cadherin 23 (otocadherin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66513438-2	chr9	66512938	66513938	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175206, intron 1 of 1)	intron (NM_175206, intron 1 of 1)	1155.0	NM_175206	74165.0	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98004435-2	chr15	98003935	98004935	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_031163, exon 1 of 54)	exon (NM_031163, exon 1 of 54)	289.0	NM_031163	12824.0	Mm.2423	NM_031163	ENSMUSG00000022483	Col2a1	Col2|Col2a|Col2a-1|Del1|Dmm|Lpk|Rgsc856	collagen, type II, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-3029453-1	chr9	3028953	3029953	+	1000.0	f0_c57.idr	Intergenic	GSAT_MM|Satellite|Satellite	9290.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141793589-4	chr4	141793091	141794091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015733)	promoter-TSS (NM_015733)	-21.0	NM_015733	12371.0	Mm.88829	NM_015733	ENSMUSG00000028914	Casp9	AI115399|APAF-3|AW493809|CASP-9|Caspase-9|ICE-LAP6|Mch6	caspase 9	protein-coding	64.0	243.5	164.0	76.0	245.0	149.0
Merged-chr11-121237115-4	chr11	121236590	121237590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026272)	promoter-TSS (NM_026272)	-146.0	NM_026272	67608.0	Mm.291832	NM_026272	ENSMUSG00000000056	Narf	4430402O11Rik	nuclear prelamin A recognition factor	protein-coding	0.0	2.5	3.0	0.0	5.0	3.0
Merged-chr1-24099923-2	chr1	24099423	24100423	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026604, intron 1 of 20)	CpG	418.0	NM_026604	68187.0	Mm.87130	NM_026604	ENSMUSG00000026153	Fam135a	4921533L14Rik|AI256732|AI835491	family with sequence similarity 135, member A	protein-coding	4.0	6.5	6.5	8.5	6.0	14.5
Merged-chr15-6522960-4	chr15	6522482	6523482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56865.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-53633639-4	chr9	53633153	53634153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161618, intron 9 of 17)	intron (NM_001161618, intron 9 of 17)	-23303.0	NM_144784	110446.0	Mm.293233	NM_144784	ENSMUSG00000032047	Acat1	6330585C21Rik|Acat	acetyl-Coenzyme A acetyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-45497739-4	chr5	45497229	45498229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024434, intron 4 of 12)	intron (NM_024434, intron 4 of 12)	4355.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25813757-4	chr7	25813207	25814207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028775, intron 2 of 8)	L2c|LINE|L2	2823.0	NM_028775	74134.0	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-40308572-1	chr8	40308072	40309072	+	1000.0	f1_c57bl6.idr	promoter-TSS (NR_106126)	promoter-TSS (NR_106126)	521.0	NM_030110	78506.0	Mm.169893	NM_030110	ENSMUSG00000039478	Micu3	2900075B16Rik|Efha2	mitochondrial calcium uptake family, member 3	protein-coding	31.5	92.5	65.5	34.0	25.5	23.0
Merged-chr15-59739338-4	chr15	59738821	59739821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55638.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78166300-2	chr10	78165800	78166800	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138601, intron 4 of 6)	intron (NM_138601, intron 4 of 6)	3468.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-103181186-4	chr9	103180650	103181650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173781, intron 7 of 7)	intron (NM_173781, intron 7 of 7)	20915.0	NM_009275	20818.0	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-100015796-4	chr10	100015285	100016285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013598)	promoter-TSS (NM_013598)	-36.0	NM_001347156	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29393549-4	chr19	29393040	29394040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17379.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95548673-4	chr10	95548166	95549166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027722, exon 5 of 5)	3' UTR (NM_027722, exon 5 of 5)	10655.0	NR_037212	100526463.0		NR_037212	ENSMUSG00000092867	Mir3058	mir-3058|mmu-mir-3058	microRNA 3058	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-97673031-4	chr1	97672531	97673531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11013.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109247089-4	chr11	109246590	109247590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165934, intron 12 of 16)	L1MB8|LINE|L1	51091.0	NM_001165934	19739.0	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45628895-4	chr7	45628387	45629387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028544, exon 3 of 12)	exon (NM_028544, exon 3 of 12)	1350.0	NM_028544	69903.0	Mm.181396	NM_028544	ENSMUSG00000044562	Rasip1	1110025D03Rik|2610025P08Rik|AI853551|Rain	Ras interacting protein 1	protein-coding	0.0	0.0	2.5	0.0	2.0	2.5
Merged-chr18-32837233-4	chr18	32836754	32837754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045381)	promoter-TSS (NR_045381)	29.0	NM_144863	225348.0	Mm.38816	NM_144863	ENSMUSG00000038299	Wdr36	5730444A13Rik|Ta-wdrp	WD repeat domain 36	protein-coding	5.5	10.5	1.5	0.0	17.0	13.5
Merged-chr9-71951434-4	chr9	71950924	71951924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011544, intron 5 of 20)	intron (NM_011544, intron 5 of 20)	-55328.0	NM_001253863	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	157.5	198.0	217.0	116.5	201.0	167.5
Merged-chr16-12032679-4	chr16	12032188	12033188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028277, intron 2 of 4)	intron (NM_028277, intron 2 of 4)	48575.0	NM_001174086	72555.0	Mm.310139	NM_028277	ENSMUSG00000022494	Shisa9	2700045P11Rik|Ckamp44	shisa family member 9	protein-coding	9.0	29.5	20.0	8.0	4.5	10.0
Merged-chr2-11778510-4	chr2	11778004	11779004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348237)	promoter-TSS (NM_001348237)	751.0	NM_177268	320816.0	Mm.260201	NM_177268	ENSMUSG00000047909	Ankrd16	2810455F06Rik|AI646698|D430029B21Rik	ankyrin repeat domain 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-56928316-4	chr9	56927785	56928785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175483)	promoter-TSS (NM_175483)	86.0	NM_175483	235406.0	Mm.191459	NM_175483	ENSMUSG00000032733	Snx33	E130307J07Rik|Sh3px3	sorting nexin 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-40440688-3	chr18	40440200	40441200	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026135, intron 1 of 1)	MTD|LTR|ERVL-MaLR	182339.0	NM_026135	383348.0	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	15.0	0.5	11.5	15.0	0.5	7.0
Merged-chr9-89199278-4	chr9	89198782	89199782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007534)	promoter-TSS (NM_007534)	9.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25574885-4	chr2	25574348	25575348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029293)	promoter-TSS (NM_029293)	23.0	NM_029293	75454.0	Mm.458079	NM_029293	ENSMUSG00000036504	Phpt1	1700008C22Rik|PHP|Php14	phosphohistidine phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164867376-4	chr2	164866873	164867873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9665.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	52.0	123.0	69.5	34.5	163.5	91.5
Merged-chr17-28177305-4	chr17	28176804	28177804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172617)	promoter-TSS (NM_172617)	108.0	NM_001357995	224656.0	Mm.267359	NM_172617	ENSMUSG00000024220	Zfp523	2810027J07|BC025615|Znf76	zinc finger protein 523	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90489116-4	chr2	90488616	90489616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-9942.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	82.0	218.0	121.5	43.5	136.0	111.0
Merged-chr19-43648535-3	chr19	43648033	43649033	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6526.0	NR_152201	100043245.0	Mm.402688	NR_152201		Gm4311	-	predicted gene 4311	ncRNA	3.5	0.0	3.0	0.0	0.0	0.0
Merged-chr3-142530226-4	chr3	142529730	142530730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083312)	promoter-TSS (NM_001083312)	-106.0	NM_001083312	229900.0	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-42951966-2	chr4	42951466	42952466	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355439, intron 2 of 4)	intron (NM_001355439, intron 2 of 4)	1570.0	NM_001355440	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54735737-4	chr14	54735234	54736234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016972, exon 5 of 11)	exon (NM_016972, exon 5 of 11)	-23560.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	54.5	105.5	59.0	42.0	89.0	81.0
Merged-chr16-44724406-4	chr16	44723902	44724902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145972, exon 1 of 9)	exon (NM_145972, exon 1 of 9)	101.0	NM_145972	212547.0	Mm.310573	NM_145972	ENSMUSG00000036208	Nepro	-	nucleolus and neural progenitor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76698094-4	chr15	76697576	76698576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_182805, exon 5 of 11)	exon (NM_182805, exon 5 of 11)	1350.0	NM_182805	76282.0	Mm.30130	NM_182805	ENSMUSG00000022546	Gpt	1300007J06Rik|2310022B03Rik|ALT|ALT1|Gpt-1|Gpt1	glutamic pyruvic transaminase, soluble	protein-coding	6.0	9.0	5.5	9.5	3.0	6.0
Merged-chr13-80941034-4	chr13	80940529	80941529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_103550, intron 1 of 4)	AmnSINE1|SINE|Deu	626.0	NR_103550	71416.0	Mm.415500	NR_103550		5430425K12Rik	-	RIKEN cDNA 5430425K12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20455220-4	chr11	20454733	20455733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-88020.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	4.0	5.5	2.0	12.5	0.5	7.5
Merged-chr5-24573851-2	chr5	24573351	24574351	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359205, intron 3 of 13)	intron (NM_001359205, intron 3 of 13)	3495.0	NM_001359205	27407.0	Mm.21629	NM_013853	ENSMUSG00000028953	Abcf2	0710005O05Rik|Drr3|E430001O06	ATP-binding cassette, sub-family F (GCN20), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40349278-4	chr10	40348781	40349781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168304)	promoter-TSS (NM_001168304)	-27.0	NM_001291817	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-47228445-4	chr13	47227961	47228961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 3 of 7)	intron (NM_146042, intron 3 of 7)	34458.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-37972004-4	chr15	37971497	37972497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001112721, intron 56 of 58)	intron (NM_001112721, intron 56 of 58)	-10942.0	NM_199476	382985.0	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32857052-4	chr12	32856537	32857537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32921.0	NR_045032	100504486.0	Mm.440246	NR_045032		Gdap10	Gdap-ps	ganglioside-induced differentiation-associated-protein 10	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110695954-3	chr12	110695468	110696468	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010480, intron 1 of 10)	CpG	427.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-94432392-4	chr9	94431940	94432940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	105641.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	3.5	14.0	18.5	2.5	30.5	13.0
Merged-chr10-8021505-4	chr10	8021013	8022013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-65390.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113267420-4	chr13	113266917	113267917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57758.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-83314663-4	chr4	83314169	83315169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 1 of 19)	MIR|SINE|MIR	9520.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	13.0	52.0	30.0	16.5	70.0	35.5
Merged-chr2-32757156-4	chr2	32756638	32757638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045485)	promoter-TSS (NR_045485)	-96.0	NR_045485	30933.0	Mm.200695	NM_152800	ENSMUSG00000009563	Tor2a	Prosalusin	torsin family 2, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95658773-4	chr3	95658263	95659263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008562)	promoter-TSS (NM_008562)	42.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126587057-4	chr8	126586595	126587595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6341.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101169989-3	chr4	101169492	101170492	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 11 of 24)	intron (NM_146145, intron 11 of 24)	95290.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24394413-5	chr5	24394002	24395002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029020, exon 1 of 16)	exon (NM_029020, exon 1 of 16)	346.0	NM_029020	74610.0	Mm.283914	NM_029020	ENSMUSG00000028973	Abcb8	4833412N02Rik|AA409895	ATP-binding cassette, sub-family B (MDR/TAP), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-126596264-4	chr3	126595727	126596727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293665)	promoter-TSS (NM_001293665)	-724.0	NM_001346636	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	147.0	266.5	216.5	99.5	308.0	181.5
Merged-chr14-56887120-4	chr14	56886564	56887564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360643, intron 1 of 24)	CpG-4519	221.0	NM_001360643	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-69803005-4	chr2	69802505	69803505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	13268.0	NM_028521	73373.0	Mm.9621	NM_028521	ENSMUSG00000027088	Phospho2	1700048E23Rik|AI661517|AU021728|AV006103|Phos2	phosphatase, orphan 2	protein-coding	4.5	0.0	1.5	0.0	0.0	0.5
Merged-chr15-38285793-4	chr15	38285296	38286296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	14104.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-21316435-4	chr12	21315932	21316932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026347)	promoter-TSS (NM_026347)	40.0	NM_026347	67732.0	Mm.335830	NM_026347	ENSMUSG00000062054	Iah1	1500019E20Rik|4833421E05Rik	isoamyl acetate-hydrolyzing esterase 1 homolog	protein-coding	30.0	66.0	65.5	30.0	101.5	62.5
Merged-chr10-62507872-4	chr10	62507381	62508381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011157)	promoter-TSS (NM_011157)	-124.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119088314-4	chr9	119087804	119088804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293648)	promoter-TSS (NM_001293648)	-43.0	NM_001293648	18799.0	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding	2.0	0.0	5.5	1.5	3.0	2.5
Merged-chr3-63964761-4	chr3	63964249	63965249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331067)	promoter-TSS (NM_001331067)	-16.0	NM_015728	11416.0	Mm.135619	NM_015728	ENSMUSG00000027822	Slc33a1	AI315656|AI788741|Acatn|D630022N01Rik	solute carrier family 33 (acetyl-CoA transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-83543977-4	chr10	83543494	83544494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033375)	promoter-TSS (NM_001033375)	53.0	NM_001033375	319277.0	Mm.491194	NM_001033375	ENSMUSG00000034560	Washc4	A230046K03Rik|AA589518|Kiaa1033|mKIAA1033	WASH complex subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134640970-4	chr6	134640456	134641456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026371)	promoter-TSS (NM_026371)	16.0	NM_026371	67774.0	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	22.5	67.5	64.0	49.0	111.0	87.0
Merged-chr11-62648759-4	chr11	62648254	62649254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198861)	promoter-TSS (NM_198861)	90.0	NM_175002	216829.0	Mm.295306	NM_175002	ENSMUSG00000048497	Mmgt2	AI852046	membrane magnesium transporter 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25155972-4	chr9	25155471	25156471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-4190.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-189007819-4	chr1	189007324	189008324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172650)	promoter-TSS (NM_172650)	16.0	NM_001359577	226823.0	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-53710829-4	chr6	53710329	53711329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109996.0	NM_025817	66873.0	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	3.5	6.5	2.0	8.5	7.5	1.5
Merged-chr7-19562358-4	chr7	19561789	19562789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_199149, exon 1 of 13)	5' UTR (NM_199149, exon 1 of 13)	109.0	NM_199149	232947.0	Mm.219662	NM_199149	ENSMUSG00000051403	Ppp1r37	Gm158|Lrrc68	protein phosphatase 1, regulatory subunit 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-41070973-6	chr9	41070451	41071451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	8555.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	44.0	94.0	80.0	50.0	99.0	69.5
Merged-chr5-81037317-4	chr5	81036840	81037840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198702, intron 1 of 27)	intron (NM_198702, intron 1 of 27)	15747.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	2.5	10.0	8.5	14.5	14.5	6.5
Merged-chr18-11794449-4	chr18	11793990	11794990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44784.0	NM_001146287	63955.0	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	69.0	74.0	83.0	84.5	102.0	89.5
Merged-chr11-4536826-4	chr11	4536343	4537343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028860, intron 1 of 17)	PB1D10|SINE|Alu	57972.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21169095-4	chr9	21168624	21169624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183408, intron 1 of 14)	intron (NM_183408, intron 1 of 14)	3410.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37997295-4	chr1	37996769	37997769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198303)	promoter-TSS (NM_198303)	-61.0	NM_172054	98258.0	Mm.28438	NM_172054	ENSMUSG00000058407	Txndc9	AI098020|APACD	thioredoxin domain containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48324476-4	chr17	48323984	48324984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177083, exon 6 of 6)	3' UTR (NM_177083, exon 6 of 6)	8322.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-128004595-4	chr1	128004088	128005088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 8 of 20)	B4A|SINE|B4	97883.0	NM_027678	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137913550-5	chr4	137913077	137914077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 2 of 19)	CpG	51340.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	5.0	4.5	7.0	10.0	13.0	15.0
Merged-chr7-28392824-4	chr7	28392316	28393316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026042)	promoter-TSS (NM_026042)	-126.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149166714-4	chr4	149166214	149167214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356332)	promoter-TSS (NM_001356332)	-9.0	NM_001081274	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140748559-4	chr5	140748052	140749052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 5 of 7)	intron (NM_173405, intron 5 of 7)	24425.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-65787811-2	chr11	65787311	65788311	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316368, intron 1 of 10)	CpG	548.0	NM_009157	26398.0	Mm.412922	NM_009157	ENSMUSG00000033352	Map2k4	JNKK1|MEK4|MKK4|PRKMK4|Sek1|Serk1	mitogen-activated protein kinase kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-143702892-4	chr1	143702387	143703387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145991)	promoter-TSS (NM_145991)	6.0	NM_145991	214498.0	Mm.156727	NM_145991	ENSMUSG00000026361	Cdc73	8430414L16Rik|C130030P16Rik|C81219|Hrpt2	cell division cycle 73, Paf1/RNA polymerase II complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14892831-4	chr8	14892320	14893320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012000, intron 1 of 2)	intron (NM_012000, intron 1 of 2)	4284.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	45.0	119.0	85.0	21.0	87.0	71.0
Merged-chr11-74830438-4	chr11	74829940	74830940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010813)	promoter-TSS (NM_010813)	-484.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	54.5	132.0	97.0	69.0	114.0	113.0
Merged-chr19-6296758-4	chr19	6296237	6297237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 3 of 4)	intron (NM_010119, intron 3 of 4)	-9720.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141444115-4	chr7	141443622	141444622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360523)	promoter-TSS (NM_001360523)	-97.0	NR_153591	57913.0	Mm.334321	NM_022654	ENSMUSG00000025507	Pidd1	1200011D09Rik|AU042446|Lrdd|Pidd	p53 induced death domain protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43444036-4	chr7	43443543	43444543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026695)	promoter-TSS (NM_026695)	-29.0	NM_026695	110826.0	Mm.30200	NM_026695	ENSMUSG00000004610	Etfb	0610009I16Rik|2810441H06Rik	electron transferring flavoprotein, beta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124084597-2	chr5	124084097	124085097	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019875, intron 2 of 11)	intron (NM_019875, intron 2 of 11)	11201.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-69309297-4	chr10	69308783	69309783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43629.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14233189-4	chr8	14232685	14233685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 2 of 15)	intron (NM_172910, intron 2 of 15)	137310.0	NM_172910	244310.0	Mm.404697	NM_172910	ENSMUSG00000047495	Dlgap2	6430596N04Rik|Dap-2|Dap2|Sapap2	DLG associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166713965-4	chr2	166713481	166714481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177782)	promoter-TSS (NM_177782)	-149.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155803598-4	chr4	155803116	155804116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_025570, exon 2 of 5)	5' UTR (NM_025570, exon 2 of 5)	738.0	NM_025570	66448.0	Mm.23825	NM_025570	ENSMUSG00000029066	Mrpl20	2610008D01Rik|4930425I20Rik	mitochondrial ribosomal protein L20	protein-coding	12.5	96.0	95.5	47.0	91.0	86.5
Merged-chr1-43098601-4	chr1	43098110	43099110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133818)	promoter-TSS (NM_133818)	18.0	NM_001013025	73122.0	Mm.246069	NM_001013025	ENSMUSG00000070939	Tgfbrap1	3110018K12Rik|AU024090|AU042859|AW742551|Trap1	transforming growth factor, beta receptor associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18066375-4	chr16	18065878	18066878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289813)	promoter-TSS (NM_001289813)	-25.0	NR_110380	13353.0	Mm.27155	NM_010047	ENSMUSG00000003531	Dgcr6	-	DiGeorge syndrome critical region gene 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40073808-4	chr10	40073317	40074317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 3 of 5)	RSINE1|SINE|B4	-48549.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111540180-4	chr10	111539669	111540669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33883.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-128724710-4	chr1	128724198	128725198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-132399.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	74.0	210.0	131.0	78.0	177.5	123.0
Merged-chr6-90550716-4	chr6	90550212	90551212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027406)	promoter-TSS (NM_027406)	-81.0	NM_001356412	107747.0	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-65042713-4	chr6	65042191	65043191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355250)	promoter-TSS (NM_001355250)	100.0	NM_001355249	13990.0	Mm.99113	NM_007958	ENSMUSG00000029920	Smarcad1	AV081750|AW226546|D6Pas1|Etl1|etl-1|mKIAA1122	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-85961244-4	chr6	85960754	85961754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028099, intron 1 of 8)	CpG	413.0	NM_028099	72102.0	Mm.24007	NM_028099	ENSMUSG00000030002	Dusp11	2010300F21Rik|AI481497	dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24720781-4	chr17	24720295	24721295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027900)	promoter-TSS (NR_027900)	6.0	NR_002897	104366.0	Mm.157452	NR_002897	ENSMUSG00000077709	Snora64	MBI-29|Rnu64	small nucleolar RNA, H/ACA box 64	snoRNA	89.0	179.5	215.0	116.0	236.0	238.5
Merged-chr6-123170390-4	chr6	123169896	123170896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-2627.0	NM_001004159	381809.0	Mm.333372	NM_001004159	ENSMUSG00000067767	Clec4b2	Aplra1|F830043G12Rik|mDCAR1	C-type lectin domain family 4, member b2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-53700970-2	chr9	53700470	53701470	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175562, intron 1 of 1)	intron (NM_175562, intron 1 of 1)	5262.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	6.0	3.0	2.0	2.0	5.0	6.5
Merged-chr10-81291738-4	chr10	81291233	81292233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282095)	promoter-TSS (NM_001282095)	-152.0	NM_001282095	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-37452150-4	chr2	37451668	37452668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033960)	promoter-TSS (NM_001033960)	-86.0	NM_001033960	227800.0	Mm.383192	NM_146121	ENSMUSG00000035437	Rabgap1	Gapcena|mKIAA4104	RAB GTPase activating protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36135944-4	chr17	36135444	36136444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6519.0	NM_001177467	630294.0	Mm.484916	NM_001177467	ENSMUSG00000092243	Gm7030	EG630294|H2-t9	predicted gene 7030	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87462920-2	chr11	87462420	87463420	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	35329.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45531238-4	chr4	45530738	45531738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033306)	promoter-TSS (NM_001033306)	-410.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37218777-4	chr13	37218277	37219277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126568.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	35.0	107.5	63.0	53.0	105.0	39.0
Merged-chr11-96944050-4	chr11	96943555	96944555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003293)	promoter-TSS (NR_003293)	-36.0	NM_134021	103711.0	Mm.254704	NM_134021	ENSMUSG00000018659	Pnpo	AI415282	pyridoxine 5'-phosphate oxidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84815469-8	chr3	84814882	84815882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177773)	promoter-TSS (NM_001177773)	-195.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	4.0	9.0	3.0	1.5	12.5	2.5
Merged-chr5-109866622-4	chr5	109866114	109867114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32472.0	NR_027964	667213.0	Mm.454429	NR_027964	ENSMUSG00000105044	Gm10416	EG667213	zinc finger protein pseudogene	pseudo	14.5	32.0	20.5	17.5	47.5	26.0
Merged-chr14-103059815-4	chr14	103059293	103060293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR9E|LTR|ERVK	-10423.0	NM_001033242	211286.0	Mm.295289	NM_001033242	ENSMUSG00000022125	Cln5	A730075N08Rik	ceroid-lipofuscinosis, neuronal 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81401364-4	chr10	81400816	81401816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 8 of 8)	intron (NM_026756, intron 8 of 8)	8252.0	NM_001099917	72273.0	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102924829-4	chr14	102924346	102925346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57786.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126020675-2	chr4	126020175	126021175	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR18B|LTR|ERVK	-3984.0	NR_045561	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134396251-4	chr4	134395751	134396751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285875)	promoter-TSS (NM_001285875)	-69.0	NM_133880	100163.0	Mm.22116	NM_133880	ENSMUSG00000037366	Pafah2	2310074E22Rik|AI507170	platelet-activating factor acetylhydrolase 2	protein-coding	44.5	17.5	58.0	33.5	23.5	26.5
Merged-chr11-80067781-4	chr11	80067283	80068283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018776, intron 1 of 7)	intron (NM_018776, intron 1 of 7)	13208.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32401715-4	chr16	32401182	32402182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160402, intron 1 of 4)	intron (NM_001160402, intron 1 of 4)	1176.0	NM_001160402	277203.0	Mm.484240	NM_001160402	ENSMUSG00000079625	Tm4sf19	EG277203	transmembrane 4 L six family member 19	protein-coding	26.0	48.0	15.0	20.5	20.5	20.0
Merged-chr3-52102114-4	chr3	52101602	52102602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	2904.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103791359-4	chr3	103790860	103791860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301306)	promoter-TSS (NM_001301306)	-85.0	NM_010432	15257.0	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	50.5	156.0	142.5	70.0	178.0	162.5
Merged-chr8-71611011-4	chr8	71610516	71611516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146211)	promoter-TSS (NM_146211)	-8.0	NM_146211	234407.0	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	130.5	316.0	237.5	134.0	289.0	236.5
Merged-chr11-79339552-4	chr11	79339062	79340062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010897)	promoter-TSS (NM_010897)	-330.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	81.0	188.5	125.5	72.5	150.5	148.0
Merged-chr6-29768328-4	chr6	29767814	29768814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021414)	promoter-TSS (NM_021414)	-129.0	NM_021414	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	49.0	104.0	62.0	53.5	142.0	107.5
Merged-chr9-56094971-4	chr9	56094467	56095467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	4991.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38550797-4	chr6	38550290	38551290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138680)	promoter-TSS (NM_138680)	-544.0	NM_138680	192196.0	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86159693-1	chr15	86159193	86160193	+	1000.0	f1_balb.idr	intron (NM_145475, intron 3 of 12)	intron (NM_145475, intron 3 of 12)	-26035.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	3.0	9.5	0.0	1.0	7.0	3.5
Merged-chr2-118545967-4	chr2	118545473	118546473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331221, intron 2 of 3)	intron (NM_001331221, intron 2 of 3)	-1386.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	9.5	28.5	9.5	4.5	27.0	7.5
Merged-chr11-98816945-4	chr11	98816440	98817440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138660, intron 3 of 13)	intron (NM_138660, intron 3 of 13)	-6851.0	NR_033551	100037262.0	Mm.442062	NR_033551	ENSMUSG00000075576	Gm12359	-	predicted gene 12359	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-49521163-4	chr4	49520690	49521690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289901)	promoter-TSS (NM_001289901)	14.0	NM_001289901	230162.0	Mm.186994	NM_145547	ENSMUSG00000039634	Zfp189	BB131811|C430015I23Rik	zinc finger protein 189	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34858813-4	chr1	34858277	34859277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357425, intron 2 of 8)	intron (NM_001357425, intron 2 of 8)	8788.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-9700524-4	chr1	9700029	9701029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290397)	promoter-TSS (NM_001290397)	-320.0	NM_008651	17864.0	Mm.479	NM_008651	ENSMUSG00000025912	Mybl1	A-myb|G1-419-6|repro9	myeloblastosis oncogene-like 1	protein-coding	6.5	39.5	27.0	6.0	23.5	29.0
Merged-chr14-103487162-4	chr14	103486662	103487662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26179.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12859342-1	chr19	12858842	12859842	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-2435.0	NM_146702	258697.0	Mm.223132	NM_146702	ENSMUSG00000046272	Olfr1444	MOR202-4	olfactory receptor 1444	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-32801948-4	chr13	32801443	32802443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030215)	promoter-TSS (NM_030215)	-87.0	NM_030215	78903.0	Mm.286680	NM_030215	ENSMUSG00000021400	Wrnip1	4833444L21Rik|WHIP|Wrnip	Werner helicase interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26445951-4	chr2	26445435	26446435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153125)	promoter-TSS (NM_153125)	11.0	NR_152207	100125929.0	Mm.392411	NR_152207		0610009E02Rik	-	RIKEN cDNA 0610009E02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-54837862-4	chr1	54837336	54838336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	88551.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	22.0	39.0	31.5	22.5	49.5	36.5
Merged-chr5-146948648-4	chr5	146948128	146949128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025652)	promoter-TSS (NM_025652)	-29.0	NM_025652	66596.0	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	114.5	216.5	202.5	18.5	90.0	51.0
Merged-chr9-80066988-4	chr9	80066503	80067503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146003)	promoter-TSS (NM_146003)	100.0	NM_146003	215351.0	Mm.28232	NM_146003	ENSMUSG00000034252	Senp6	2810017C20Rik|E130319N12Rik|Susp1|mKIAA0797	SUMO/sentrin specific peptidase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25543525-4	chr8	25543045	25544045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079909, intron 2 of 16)	intron (NM_001079909, intron 2 of 16)	12538.0	NR_110510	102633315.0	Mm.437828	NR_110510	ENSMUSG00000086134	Gm16159	-	predicted gene 16159	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95855860-4	chr3	95855380	95856380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027541)	promoter-TSS (NM_027541)	5.0	NM_001316751	70767.0	Mm.279872	NM_027541	ENSMUSG00000015748	Prpf3	3632413F13Rik	pre-mRNA processing factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128125914-4	chr2	128125404	128126404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207680)	promoter-TSS (NM_207680)	-134.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0.5	15.5	9.5	4.0	13.0	15.5
Merged-chr2-30929907-4	chr2	30929435	30930435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23066.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65782860-4	chr17	65782338	65783338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104465)	promoter-TSS (NR_104465)	-517.0	NR_152099	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	8.5	29.0	15.5	8.5	29.0	16.0
Merged-chr13-98925664-4	chr13	98925159	98926159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 1 of 23)	intron (NM_178716, intron 1 of 23)	725.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81643738-4	chr10	81643210	81644210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027480, exon 17 of 20)	exon (NM_027480, exon 17 of 20)	-5359.0	NM_001142963	100233208.0	Mm.327168	NM_001142963	ENSMUSG00000096856	Gm10778	-	predicted gene 10778	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-109038616-4	chr9	109038095	109039095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284332)	promoter-TSS (NM_001284332)	28.0	NM_025858	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40684271-4	chr19	40683764	40684764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	24494.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	147.5	308.5	173.5	132.0	271.0	157.0
Merged-chr7-64285767-4	chr7	64285265	64286265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1905.0	NM_172742	233315.0	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-26636869-4	chr14	26636379	26637379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1255.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-92988375-3	chr6	92987826	92988826	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	47744.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	1.5	1.0	2.0	19.5	32.0	8.0
Merged-chr13-98832610-4	chr13	98832112	98833112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17163.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-28917992-4	chr19	28917494	28918494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45926.0	NM_028922	74411.0	Mm.441887	NM_028922	ENSMUSG00000040105	Plpp6	4932443D16Rik|Ppapdc2	phospholipid phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147927868-4	chr4	147927377	147928377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011122, intron 6 of 18)	intron (NM_011122, intron 6 of 18)	8899.0	NM_011122	18822.0	Mm.23951	NM_011122	ENSMUSG00000019055	Plod1	2410042F05Rik|AI854890|AV007929|Lh1|Plod	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12941812-4	chr18	12941338	12942338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207530)	promoter-TSS (NM_207530)	3.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31407053-2	chr14	31406553	31407553	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	B1_Mur1|SINE|Alu	10624.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53600069-4	chr19	53599659	53600659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007790)	promoter-TSS (NM_007790)	-237.0	NM_007790	13006.0	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-82357980-4	chr3	82357502	82358502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081230)	promoter-TSS (NM_001081230)	-70.0	NM_001081230	213582.0	Mm.271269	NM_001081230	ENSMUSG00000033900	Map9	5033421J10Rik|5330427D05Rik|ASAP|Mtap9	microtubule-associated protein 9	protein-coding	0.0	6.0	0.5	0.0	7.0	0.0
Merged-chr1-192091450-2	chr1	192090950	192091950	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011633, intron 1 of 9)	intron (NM_011633, intron 1 of 9)	1149.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110770823-4	chr5	110770317	110771317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173066)	promoter-TSS (NM_173066)	-100.0	NM_173066	75560.0	Mm.270487	NM_029337	ENSMUSG00000029505	Ep400	1700020J09Rik|AU023439|mDomino|mKIAA1498|p400	E1A binding protein p400	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98702990-4	chr7	98702444	98703444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028410)	promoter-TSS (NM_028410)	-16.0	NR_144495	100040769.0	Mm.126401	NR_144495		Gm15506	-	predicted gene 15506	ncRNA	65.5	112.0	105.5	39.5	63.0	52.0
Merged-chr2-60810804-4	chr2	60810292	60811292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	70646.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12761316-4	chr18	12760818	12761818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252490, intron 10 of 13)	intron (NM_001252490, intron 10 of 13)	19963.0	NM_027687	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84846996-4	chr8	84846501	84847501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007591)	promoter-TSS (NM_007591)	-70.0	NM_007591	12317.0	Mm.1971	NM_007591	ENSMUSG00000003814	Calr	CRT|Calregulin	calreticulin	protein-coding	44.0	76.5	54.0	40.0	93.0	61.5
Merged-chr16-58507870-4	chr16	58507356	58508356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 1 of 10)	intron (NM_001357433, intron 1 of 10)	15570.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45250075-4	chr9	45249568	45250568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001198971)	TTS (NM_001198971)	16639.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93048563-2	chr2	93048063	93049063	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2419.0	NM_001177536	100042784.0	Mm.102816	NM_001177536	ENSMUSG00000075028	Prdm11	8030443D09Rik|AA163972|Gm707	PR domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155487948-4	chr4	155487441	155488441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3420.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115506837-4	chr8	115506333	115507333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	200061.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11464365-4	chr8	11463843	11464843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-13586.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-67332516-4	chr13	67332029	67333029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177622)	promoter-TSS (NM_177622)	31.0	NM_177622	218314.0	Mm.289695	NM_177622	ENSMUSG00000057842	Zfp595	A230042K10Rik|Rslcan23	zinc finger protein 595	protein-coding	8.5	56.5	14.0	17.5	64.5	20.0
Merged-chr7-19299454-3	chr7	19298966	19299966	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	8397.0	NM_001025364	20167.0	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132274332-4	chr4	132273840	132274840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025579)	promoter-TSS (NM_025579)	-35.0	NM_025579	66464.0	Mm.331926	NM_025579	ENSMUSG00000028899	Taf12	20kDa|2810422D08Rik|AW557038|Taf2J	TATA-box binding protein associated factor 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114639542-4	chr5	114639056	114640056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022017, intron 3 of 15)	intron (NM_022017, intron 3 of 15)	18865.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	1.0	5.5	0.5	2.5	4.5	2.5
Merged-chr4-145257515-4	chr4	145257015	145258015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-10645.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8842976-4	chr4	8842474	8843474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 18 of 36)	L1MA5A|LINE|L1	91650.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-90703728-2	chr6	90703228	90704228	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356440, intron 1 of 13)	intron (NM_001356440, intron 1 of 13)	12801.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77837723-4	chr18	77837214	77838214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 2 of 14)	intron (NM_013831, intron 2 of 14)	-41324.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106973203-4	chr11	106972703	106973703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26322.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	64.0	91.0	80.0	65.5	107.5	67.0
Merged-chr4-129626732-1	chr4	129626232	129627232	+	1000.0	f1_balb.idr	3' UTR (NM_001199695, exon 11 of 11)	3' UTR (NM_001199695, exon 11 of 11)	-2824.0	NM_025455	66264.0	Mm.383215	NM_025455	ENSMUSG00000028795	Ccdc28b	1110002E08Rik|1810010N17Rik	coiled coil domain containing 28B	protein-coding	0.0	14.0	5.5	3.5	5.0	20.0
Merged-chr13-34738721-4	chr13	34738191	34739191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138746)	promoter-TSS (NM_138746)	-951.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23754475-4	chr11	23753975	23754975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009044, intron 3 of 9)	intron (NM_009044, intron 3 of 9)	16495.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38497761-4	chr2	38497255	38498255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13942.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88716864-4	chr3	88716346	88717346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009069)	promoter-TSS (NM_009069)	-8.0	NM_001163310	19769.0	Mm.4009	NM_009069	ENSMUSG00000028057	Rit1	RIBB|ROC1|Rit	Ras-like without CAAX 1	protein-coding	0.0	3.5	8.5	0.0	3.5	5.0
Merged-chr11-73047792-4	chr11	73047293	73048293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025818)	promoter-TSS (NM_025818)	-74.0	NM_025818	66874.0	Mm.41903	NM_025818	ENSMUSG00000020783	Ncbp3	1200014J11Rik|C130061O14Rik|C78393	nuclear cap binding subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91382574-4	chr16	91382096	91383096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 1 of 7)	MTEa-int|LTR|ERVL-MaLR	9813.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-83486579-4	chr4	83486096	83487096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290527)	promoter-TSS (NM_001290527)	-133.0	NM_001347143	101739.0	Mm.105331	NM_133948	ENSMUSG00000028484	Psip1	AA408851|AU015605|Dfs70|Ledgfa|Ledgfb|Psip2	PC4 and SFRS1 interacting protein 1	protein-coding	84.0	133.0	132.0	44.0	91.5	75.0
Merged-chr1-36264404-4	chr1	36263922	36264922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153408)	TTS (NM_153408)	9003.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8147789-4	chr17	8147271	8148271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083938)	promoter-TSS (NM_001083938)	17.0	NM_001083938	100037283.0	Mm.426736	NM_001083938	ENSMUSG00000095687	Rnaset2a	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13668139-4	chr16	13667660	13668660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028761)	promoter-TSS (NM_028761)	10.0	NM_001358452	74108.0	Mm.182350	NM_028761	ENSMUSG00000022685	Parn	1200003I18Rik|DAN	poly(A)-specific ribonuclease (deadenylation nuclease)	protein-coding	16.5	35.5	16.0	36.0	24.0	20.0
Merged-chr10-44628858-2	chr10	44628358	44629358	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-170110.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84267916-4	chr17	84267399	84268399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 30 of 37)	L1M3|LINE|L1	-79952.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-33127972-2	chr12	33127472	33128472	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_015602, intron 4 of 5)	L1MC1|LINE|L1	19614.0	NR_015602	320046.0	Mm.208337	NR_015602	ENSMUSG00000052125	F730043M19Rik	-	RIKEN cDNA F730043M19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52584117-2	chr13	52583617	52584617	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198977, intron 1 of 13)	intron (NM_001198977, intron 1 of 13)	680.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-57398552-4	chr14	57398047	57399047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030004)	promoter-TSS (NM_030004)	-64.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84087734-3	chr18	84087221	84088221	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146090)	promoter-TSS (NM_146090)	-437.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92641950-4	chr1	92641454	92642454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028108)	promoter-TSS (NR_028108)	-6.0	NR_028108	66915.0	Mm.30179	NM_001163425	ENSMUSG00000073616	Cops9	1110002M09Rik|Myeov2	COP9 signalosome subunit 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91368958-2	chr1	91368458	91369458	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173395, intron 2 of 7)	intron (NM_173395, intron 2 of 7)	2528.0	NM_173395	227358.0	Mm.389157	NM_173395	ENSMUSG00000047443	Erfe	4832406C22|Fam132b|myonectin	erythroferrone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75032380-4	chr14	75031877	75032877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198642, exon 2 of 14)	exon (NM_198642, exon 2 of 14)	16350.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126881967-4	chr8	126881477	126882477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32957.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50924868-4	chr14	50924374	50925374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133676)	promoter-TSS (NM_133676)	19.0	NM_133676	66246.0	Mm.274791	NM_133676	ENSMUSG00000006289	Osgep	1500019L24Rik|GCPL-1|PRSMG1	O-sialoglycoprotein endopeptidase	protein-coding	96.5	256.5	261.0	114.5	302.5	277.5
Merged-chr14-19416170-4	chr14	19415666	19416666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	186421.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67463867-4	chr7	67463354	67464354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90996.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	116.0	312.5	192.0	122.0	276.5	209.0
Merged-chr11-79254201-4	chr11	79253658	79254658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019653, intron 1 of 8)	CpG	537.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47184335-4	chr17	47183797	47184797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 3 of 19)	intron (NM_001097623, intron 3 of 19)	43355.0	NM_001097623	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-56029378-3	chr16	56028875	56029875	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356449, intron 1 of 5)	CpG	342.0	NM_001356449	76302.0	Mm.310642	NM_001024622	ENSMUSG00000071533	Pcnp	1110018D06Rik|AI647035	PEST proteolytic signal containing nuclear protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29348042-4	chr6	29347542	29348542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_184053)	promoter-TSS (NM_184053)	-64.0	NM_001285412	12321.0	Mm.392075	NM_007594	ENSMUSG00000029767	Calu	9530075H20Rik	calumenin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84771426-1	chr3	84770926	84771926	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-44151.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	35.5	155.5	137.5	79.5	138.5	111.5
Merged-chr8-126908945-4	chr8	126908415	126909415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37006.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0.0	1.0	0.5	0.0	0.5	0.5
Merged-chr11-115104701-2	chr11	115104201	115105201	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163753, intron 1 of 8)	B2_Mm2|SINE|B2	13270.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34866441-4	chr6	34865945	34866945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197986, intron 1 of 1)	intron (NM_197986, intron 1 of 1)	3299.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85703523-1	chr1	85703023	85704023	+	1000.0	f0_c57.idr	intron (NM_013673, intron 17 of 19)	RLTR53B_Mm|LTR|ERVK	33083.0	NM_177055	319997.0	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-78912512-4	chr7	78912020	78913020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291220)	promoter-TSS (NM_001291220)	-904.0	NM_001291221	57444.0	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44360292-4	chr19	44359764	44360764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	26938.0	NM_183216	329065.0	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	3.5	17.5	15.5	6.5	9.0	24.0
Merged-chr9-41130768-4	chr9	41130273	41131273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	27289.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	9.5	15.0	22.0	25.5	27.5	18.0
Merged-chr8-70560914-2	chr8	70560414	70561414	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	21239.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	1.0	8.0	9.0	1.0	13.5	3.0
Merged-chr5-123058594-2	chr5	123058094	123059094	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-11578.0	NM_001347456	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	45.0	71.0	52.0	68.5	141.0	108.0
Merged-chr16-22857690-4	chr16	22857200	22858200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026400)	promoter-TSS (NM_026400)	-31.0	NM_001316746	70573.0	Mm.68291	NM_001081368	ENSMUSG00000004462	Tbccd1	5730478M09Rik|AU015083|BB165076	TBCC domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107287041-1	chr9	107286541	107287541	+	1000.0	f1_balb.idr	intron (NM_001316691, intron 1 of 7)	intron (NM_001316691, intron 1 of 7)	2355.0	NM_001316691	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	4.5	6.5	11.5	0.0	2.5	1.0
Merged-chr9-57606265-2	chr9	57605765	57606765	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146223)	promoter-TSS (NM_146223)	16.0	NM_146223	235415.0	Mm.35242	NM_146223	ENSMUSG00000039714	Cplx3	BC016632|CpxIII|ERGIC-53L|ERGL|Lamn1l|Lman1l	complexin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-11351863-3	chr18	11351373	11352373	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-281403.0	NM_001252495	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99983873-4	chr5	99983368	99984368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4930.0	NM_001077267	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33824544-4	chr17	33824021	33825021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_103515)	promoter-TSS (NR_103515)	41.0	NM_016844	54127.0	Mm.352374	NM_016844	ENSMUSG00000067288	Rps28	-	ribosomal protein S28	protein-coding	223.0	326.5	225.0	225.5	448.5	328.0
Merged-chr10-80265911-2	chr10	80265411	80266411	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133188, intron 1 of 11)	intron (NM_133188, intron 1 of 11)	920.0	NM_133188	70248.0	Mm.148693	NM_133188	ENSMUSG00000069565	Dazap1	2410042M16Rik|mPrrp	DAZ associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80146087-4	chr11	80145599	80146599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3946.0	NM_183275	68550.0	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145030844-4	chr7	145030344	145031344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90919.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	18.5	46.0	36.5	26.5	59.5	40.0
Merged-chr13-67306373-6	chr13	67305842	67306842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001003666)	promoter-TSS (NM_001003666)	70.0	NM_001003666	431706.0	Mm.439456	NM_001003666	ENSMUSG00000055341	Zfp457	Rslcan-6	zinc finger protein 457	protein-coding	17.0	43.5	20.5	21.0	17.0	18.0
Merged-chr4-126058503-4	chr4	126058008	126059008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356446)	promoter-TSS (NM_001356446)	-57.0	NM_001356446	230751.0	Mm.38907	NM_172701	ENSMUSG00000042616	Oscp1	1810007P19Rik|5730415O04|6030436A01Rik	organic solute carrier partner 1	protein-coding	8.0	20.0	24.0	12.0	18.0	6.0
Merged-chr12-3921294-1	chr12	3920794	3921794	+	1000.0	f1_balb.idr	Intergenic	Intergenic	29550.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-43925576-2	chr14	43925076	43926076	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_I-int|LTR|ERVK	-2208.0	NM_053112	93725.0	Mm.429087	NM_053112	ENSMUSG00000090166	Ear10	Raf2	eosinophil-associated, ribonuclease A family, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83699206-4	chr8	83698687	83699687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177262)	promoter-TSS (NM_177262)	-8.0	NM_177262	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	89.0	95.5	119.0	26.5	81.5	88.5
Merged-chr18-88971692-4	chr18	88971195	88972195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175542)	promoter-TSS (NM_175542)	-95.0	NM_175542	246102.0	Mm.772	NM_175542	ENSMUSG00000023066	Rttn	4921538A15Rik|AI666264|C530033I08Rik|D230040K24	rotatin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45563836-4	chr17	45563321	45564321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357105)	promoter-TSS (NM_001357105)	-115.0	NM_001357105	73836.0	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	13.0	20.0	4.5	9.0	33.0	7.5
Merged-chr7-45341517-4	chr7	45341005	45342005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029741, intron 25 of 29)	intron (NM_029741, intron 25 of 29)	6236.0	NM_010473	15464.0	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3768869-4	chr19	3768381	3769381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167889, intron 2 of 10)	CpG-7172	1460.0	NM_001167885	225888.0	Mm.278578	NM_144871	ENSMUSG00000045098	Kmt5b	AA117471|C630029K18Rik|Suv4-20h1|Suv420h1	lysine methyltransferase 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117299748-2	chr8	117299248	117300248	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	42729.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59440163-4	chr4	59439643	59440643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1510.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	24.0	54.0	71.0	15.0	69.5	74.0
Merged-chr15-30610832-4	chr15	30610344	30611344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-428282.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	62.5	169.0	137.0	64.5	151.0	75.5
Merged-chr6-33837033-4	chr6	33836515	33837515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 12 of 17)	intron (NM_009148, intron 12 of 17)	-192433.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36346492-2	chr18	36345992	36346992	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2132.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29399380-4	chr17	29398884	29399884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38470.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	12.0	8.5	11.0	2.5	4.0	5.5
Merged-chr11-55468764-4	chr11	55468243	55469243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1009.0	NM_013716	27041.0	Mm.39631	NM_013716	ENSMUSG00000018583	G3bp1	AI849976|B430204O07|C87777|G3bp|mKIAA4115	GTPase activating protein (SH3 domain) binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171845639-4	chr1	171845128	171846128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289470, intron 2 of 8)	intron (NM_001289470, intron 2 of 8)	5931.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	34.5	80.0	50.5	12.0	66.0	39.0
Merged-chr3-108591917-2	chr3	108591417	108592417	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001358055, exon 1 of 15)	5' UTR (NM_001358055, exon 1 of 15)	184.0	NM_001358055	99512.0	Mm.285968	NM_181400	ENSMUSG00000040389	Wdr47	1810073M12Rik|AA552998|mKIAA0893	WD repeat domain 47	protein-coding	0.0	0.0	2.5	0.0	0.0	1.0
Merged-chr4-148500344-3	chr4	148499863	148500863	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039554)	promoter-TSS (NM_001039554)	99.0	NM_001039554	654812.0	Mm.388929	NM_001039554	ENSMUSG00000028989	Angptl7	-	angiopoietin-like 7	protein-coding	21.0	45.5	48.5	31.0	62.0	87.0
Merged-chr6-124921758-4	chr6	124921260	124922260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152158, intron 1 of 1)	7SLRNA|srpRNA|srpRNA	-3814.0	NM_026988	69202.0	Mm.142187	NM_026988	ENSMUSG00000030122	Ptms	2610009E16Rik	parathymosin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-158031757-4	chr3	158031245	158032245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001093753)	promoter-TSS (NM_001093753)	27.0	NM_001356997	69207.0	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-118366384-3	chr4	118365889	118366889	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198170, intron 65 of 71)	intron (NM_198170, intron 65 of 71)	6390.0	NR_003946	68180.0	Mm.193212	NM_026601	ENSMUSG00000006395	Hyi	2700033B16Rik|6430559E15Rik|HT036	hydroxypyruvate isomerase (putative)	protein-coding	1.0	3.0	7.5	24.5	38.5	63.5
Merged-chr12-111599712-3	chr12	111599228	111600228	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021516, intron 2 of 16)	intron (NM_021516, intron 2 of 16)	25218.0	NM_022801	17169.0	Mm.260504	NM_021516	ENSMUSG00000007411	Mark3	1600015G02Rik|A430080F22Rik|C-TAK1|ETK-1|ETK1|Emk2|MPK10	MAP/microtubule affinity regulating kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24393173-4	chr13	24392523	24393523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284519, intron 2 of 17)	intron (NM_001284519, intron 2 of 17)	-22099.0	NM_007717	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146616735-4	chr3	146616225	146617225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009474, intron 4 of 7)	MLT1J1|LTR|ERVL-MaLR	-1127.0	NM_019957	56629.0	Mm.25853	NM_019957	ENSMUSG00000028185	Dnase2b	AI526873|Dlad|DnaseIIb	deoxyribonuclease II beta	protein-coding	3.0	9.5	23.0	9.0	44.0	20.0
Merged-chr6-72380464-4	chr6	72379949	72380949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080742)	promoter-TSS (NM_001080742)	19.0	NM_001080742	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144198704-4	chr3	144198208	144199208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161769, intron 2 of 4)	CpG	3624.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25413650-4	chr15	25413132	25414132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027376)	promoter-TSS (NR_027376)	132.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132535142-2	chr4	132534642	132535642	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172400)	promoter-TSS (NM_172400)	272.0	NM_007512	11983.0	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8747696-2	chr3	8747196	8748196	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-80658.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80775391-4	chr17	80774897	80775897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA9|LINE|L1	-47372.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88251694-4	chr7	88251175	88252175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26410.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	26.5	72.5	57.5	28.0	103.5	69.0
Merged-chr14-20294647-4	chr14	20294127	20295127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359868)	promoter-TSS (NM_001359868)	-63.0	NM_001359870	67725.0	Mm.317636	NM_026341	ENSMUSG00000021809	Nudt13	4933433B15Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23971191-4	chr11	23970690	23971690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75920.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34856397-4	chr18	34855896	34856896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4811.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-115828031-4	chr4	115827537	115828537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175308)	promoter-TSS (NM_175308)	-55.0	NM_175308	100465.0	Mm.35571	NM_175308	ENSMUSG00000028709	Mob3c	AW822253|D130076I06Rik|Mobkl2c	MOB kinase activator 3C	protein-coding	53.0	168.0	146.0	59.5	166.0	147.5
Merged-chr4-126967919-2	chr4	126967419	126968419	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357201)	promoter-TSS (NM_001357201)	4.0	NM_001357201	67785.0	Mm.165401	NM_001114399	ENSMUSG00000042446	Zmym4	6330503C17Rik|AI480785|AW493829|CDIR|D630001M21|MYM|Zfp262|Znf262|mKIAA0425	zinc finger, MYM-type 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36231615-4	chr17	36231144	36232144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	26202.0	NM_026308	67676.0	Mm.27131	NM_026308	ENSMUSG00000024446	Rpp21	0610037N01Rik	ribonuclease P 21 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136602778-4	chr4	136602280	136603280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347221)	promoter-TSS (NM_001347221)	-57.0	NM_001347221	99982.0	Mm.28540	NM_133872	ENSMUSG00000036940	Kdm1a	1810043O07Rik|AA408884|Aof2|D4Ertd478e|Kdm1|Lsd1|mKIAA0601	lysine (K)-specific demethylase 1A	protein-coding	4.0	5.5	4.0	4.5	7.5	3.5
Merged-chr19-46606978-2	chr19	46606481	46607481	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177812, intron 2 of 4)	intron (NM_001177812, intron 2 of 4)	7875.0	NM_146099	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	22.5	35.5	34.5	2.0	33.5	18.5
Merged-chr10-80751689-4	chr10	80751166	80752166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2D|LTR|ERVL	-3537.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70391929-3	chr9	70391434	70392434	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 26 of 27)	intron (NM_181072, intron 26 of 27)	13819.0	NR_049200	100885839.0		NR_049200	ENSMUSG00000093763	Mir5626	Gm25590|mir-5626|mmu-mir-5626	microRNA 5626	ncRNA	4.0	1.0	1.0	8.0	1.0	3.0
Merged-chr12-5119895-4	chr12	5119407	5120407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164493, intron 5 of 13)	intron (NM_001164493, intron 5 of 13)	202554.0	NM_001362349	320817.0	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65659622-1	chr3	65659122	65660122	+	1000.0	f1_balb.idr	TTS (NR_106200)	TTS (NR_106200)	334.0	NR_106200	102465905.0		NR_106200	ENSMUSG00000098944	Mir8120	Gm27637|mmu-mir-8120	microRNA 8120	ncRNA	16.5	70.5	52.5	50.0	75.0	77.0
Merged-chr7-30626153-4	chr7	30625644	30626644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025628)	promoter-TSS (NM_025628)	7.0	NM_025628	110323.0	Mm.400	NM_025628	ENSMUSG00000036751	Cox6b1	2010000G05Rik|Cox6b	cytochrome c oxidase, subunit VIb polypeptide 1	protein-coding	73.5	144.0	155.0	71.0	110.5	101.5
Merged-chr5-117486281-4	chr5	117485755	117486755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	72253.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	15.0	31.0	30.0	21.5	23.5	39.5
Merged-chr11-114886972-2	chr11	114886456	114887456	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3085.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-23256155-4	chr1	23255644	23256644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-16125.0	NR_029533	387225.0		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118611228-4	chr10	118610729	118611729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54704.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	6.0	3.5	1.5	4.0	4.0	1.0
Merged-chr10-57840976-2	chr10	57840476	57841476	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	46432.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-159231651-1	chr1	159231151	159232151	+	1000.0	f0_c57.idr	promoter-TSS (NM_001360878)	promoter-TSS (NM_001360878)	-549.0	NM_001360878	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	32.5	47.5	56.0	35.0	29.0	17.5
Merged-chr10-62486927-4	chr10	62486419	62487419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133672)	promoter-TSS (NM_133672)	-114.0	NM_001358543	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61707667-4	chr18	61707157	61708157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172832)	promoter-TSS (NM_172832)	-22.0	NM_172832	240334.0	Mm.234457	NM_172832	ENSMUSG00000024579	Pcyox1l	BC060677|C630049M13	prenylcysteine oxidase 1 like	protein-coding	0.5	1.0	0.0	0.0	4.5	0.0
Merged-chr7-113369895-4	chr7	113369389	113370389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133700)	promoter-TSS (NM_133700)	-550.0	NM_133700	68815.0	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	10.0	56.5	21.0	20.0	40.5	33.0
Merged-chr16-76341887-4	chr16	76341383	76342383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358238, intron 2 of 3)	RMER15-int|LTR|ERVL	31166.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99204364-2	chr5	99203864	99204864	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48563.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26496301-2	chr17	26495801	26496801	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12171.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	5.5	3.0	5.5	8.0	5.0	2.0
Merged-chr5-115539567-2	chr5	115539067	115540067	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	-19900.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	0.0	3.5	3.0	0.0	5.5	3.0
Merged-chr3-88531790-4	chr3	88531298	88532298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029890)	promoter-TSS (NM_001029890)	-597.0	NM_001029890	72640.0	Mm.275154	NM_001029890	ENSMUSG00000074480	Mex3a	2700083E18Rik|Gm411|Rkhd4	mex3 RNA binding family member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191325848-4	chr1	191325348	191326348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025864)	promoter-TSS (NM_025864)	-117.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	22.5	42.0	48.0	29.0	42.5	35.0
Merged-chr8-128654417-7	chr8	128653936	128654936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31218.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	3.0	20.5	9.0	6.5	7.5	12.5
Merged-chr11-97651917-2	chr11	97651417	97652417	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-11495.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	2.0	4.5	1.0	2.5	7.0	1.5
Merged-chr9-103111785-1	chr9	103111285	103112285	+	1000.0	f0_c57.idr	promoter-TSS (NM_173781)	promoter-TSS (NM_173781)	-289.0	NM_173781	270192.0	Mm.490252	NM_173781	ENSMUSG00000032549	Rab6b	9630015C03|AI844641|C330006L04Rik|D9Bwg0185e	RAB6B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62232561-2	chr10	62232061	62233061	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1343.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47882697-4	chr19	47882196	47883196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030051, intron 7 of 8)	intron (NM_030051, intron 7 of 8)	16902.0	NM_026619	68214.0	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	13.0	4.0	1.0	0.0	0.0	0.0
Merged-chr7-142061037-4	chr7	142060543	142061543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028308)	promoter-TSS (NM_028308)	-9.0	NM_028308	101513.0	Mm.53259	NM_028308	ENSMUSG00000025147	Mob2	1110017M21Rik|2700078K21Rik|AI256456|Mmh	MOB kinase activator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73963727-4	chr12	73963230	73964230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178392)	promoter-TSS (NM_178392)	-800.0	NM_178392	75627.0	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98534343-4	chr15	98533822	98534822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289437)	promoter-TSS (NM_001289437)	-53.0	NR_153345	69612.0	Mm.229107	NM_133714	ENSMUSG00000022992	Kansl2	2310037I24Rik|B930009D17	KAT8 regulatory NSL complex subunit 2	protein-coding	12.5	66.0	36.0	10.5	62.0	46.0
Merged-chr4-137356927-4	chr4	137356419	137357419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009861, intron 1 of 5)	intron (NM_009861, intron 1 of 5)	840.0	NM_009861	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	4.5	22.0	25.0	7.5	33.0	31.5
Merged-chr15-101262688-4	chr15	101262190	101263190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4156.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	66.0	135.0	87.0	22.5	66.5	57.5
Merged-chr5-100038556-4	chr5	100038113	100039113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152866, intron 1 of 8)	CpG	609.0	NM_016690	50926.0	Mm.389579	NM_016690	ENSMUSG00000029328	Hnrnpdl	AA407431|AA959857|D5Ertd650e|D5Wsu145e|Hnrnpdl1|Hnrpdl|JKTBP|hnRNP DL|hnRNP-DL	heterogeneous nuclear ribonucleoprotein D-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113663500-4	chr6	113662979	113663979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	25012.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130275204-1	chr2	130274704	130275704	+	1000.0	f1_balb.idr	promoter-TSS (NR_028547)	promoter-TSS (NR_028547)	-311.0	NR_028547	100217452.0		NR_028547	ENSMUSG00000080610	Snord110	MBII-55	small nucleolar RNA, C/D box 110	snoRNA	3.0	7.5	2.0	4.0	11.0	3.0
Merged-chr7-25756921-2	chr7	25756421	25757421	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001190974, exon 19 of 19)	3' UTR (NM_001190974, exon 19 of 19)	-2162.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80619981-4	chr15	80619481	80620481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289442, intron 1 of 7)	AmnSINE1|SINE|Deu	-3502.0	NM_010815	17444.0	Mm.12947	NM_010815	ENSMUSG00000042351	Grap2	GRAP-2|GRB2L|GRBLG|GRID|Gads|GrbX|Grf40|GrpL|Mona|P38	GRB2-related adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78982913-4	chr15	78982429	78983429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024716)	promoter-TSS (NM_001024716)	-127.0	NM_001024716	110253.0	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87462541-4	chr11	87462045	87463045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	34954.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113992464-4	chr5	113991952	113992952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198109, intron 1 of 14)	L1MB8|LINE|L1	1305.0	NM_198109	231637.0	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot protein phosphatase 1	protein-coding	4.0	10.0	16.5	1.5	25.5	20.5
Merged-chr17-78417777-4	chr17	78417288	78418288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360407, intron 1 of 9)	CpG	364.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103360441-4	chr11	103359935	103360935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183288, exon 3 of 3)	exon (NM_183288, exon 3 of 3)	3257.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	15.5	66.0	65.5	23.5	57.5	87.0
Merged-chr8-85071679-4	chr8	85071199	85072199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039514)	promoter-TSS (NM_001039514)	-58.0	NM_001039514	330817.0	Mm.193086	NM_201408	ENSMUSG00000060038	Dhps	Dhs	deoxyhypusine synthase	protein-coding	137.0	331.5	254.0	152.0	381.5	285.0
Merged-chr12-91668730-4	chr12	91668259	91669259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	-78272.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76963796-2	chr12	76963296	76964296	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1548.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80172043-4	chr11	80171526	80172526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 7 of 10)	intron (NM_172133, intron 7 of 10)	-11846.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	77.5	104.0	91.0	74.0	105.0	85.0
Merged-chr6-124728571-2	chr6	124728071	124729071	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013545, exon 5 of 16)	exon (NM_013545, exon 5 of 16)	4583.0	NM_013545	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68085778-4	chr10	68085270	68086270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106200.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	28.5	32.5	45.5	29.0	30.5	45.5
Merged-chr7-101362092-6	chr7	101361604	101362604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	14035.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	181.5	387.5	301.0	194.5	383.0	334.5
Merged-chr7-133776048-2	chr7	133775548	133776548	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025850)	promoter-TSS (NM_025850)	755.0	NM_001286032	101437.0	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32|muDDX32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-16467310-4	chr5	16466812	16467812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	-86183.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-44381088-4	chr18	44380592	44381592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027490, intron 1 of 10)	CpG	592.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129782430-4	chr4	129781912	129782912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38067.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	126.5	326.5	229.0	103.0	299.5	213.5
Merged-chr16-21596613-4	chr16	21596109	21597109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 44 of 46)	intron (NM_001081366, intron 44 of 46)	98056.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127477983-4	chr7	127477458	127478458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6344.0	NM_145589	233895.0	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117806509-2	chr10	117806009	117807009	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13804.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84302992-4	chr1	84302502	84303502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18357.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126700252-1	chr7	126699752	126700752	+	1000.0	f1_c57bl6.idr	intron (NM_001301374, intron 10 of 10)	intron (NM_001301374, intron 10 of 10)	3968.0	NM_001301374	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3713398-4	chr2	3712890	3713890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025626)	promoter-TSS (NM_025626)	-68.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102883526-4	chr14	102883022	102884022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99110.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-91223989-4	chr13	91223486	91224486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025770)	promoter-TSS (NM_025770)	1.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36484467-4	chr5	36483950	36484950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170454)	promoter-TSS (NM_001170454)	-138.0	NM_025725	66717.0	Mm.42368	NM_025725	ENSMUSG00000050677	Ccdc96	4921513E08Rik	coiled-coil domain containing 96	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-13012783-3	chr1	13012290	13013290	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-21655.0	NM_172841	240726.0	Mm.24481	NM_172841	ENSMUSG00000025938	Slco5a1	4732454B15|A630033C23Rik|AA407151	solute carrier organic anion transporter family, member 5A1	protein-coding	0.0	0.5	0.5	0.0	0.5	0.5
Merged-chr5-115158836-4	chr5	115158379	115159379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175403)	promoter-TSS (NM_175403)	-703.0	NM_175403	109154.0	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	49.0	74.5	56.5	23.0	75.5	54.5
Merged-chr1-24471421-4	chr1	24470935	24471935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007733, intron 11 of 50)	intron (NM_007733, intron 11 of 50)	116002.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	20.0	91.5	49.5	44.0	91.5	59.0
Merged-chr3-88177278-3	chr3	88176779	88177779	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045997, intron 1 of 2)	intron (NR_045997, intron 1 of 2)	506.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86750181-4	chr11	86749634	86750634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	7433.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86576198-4	chr11	86575684	86576684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7974.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121583207-4	chr10	121582709	121583709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019786, intron 2 of 20)	intron (NM_019786, intron 2 of 20)	3585.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	3.0	20.5	17.5	2.5	14.0	16.0
Merged-chr7-5062812-1	chr7	5062312	5063312	+	1000.0	f0_c57.idr	intron (NM_001205231, intron 1 of 11)	intron (NM_001205231, intron 1 of 11)	669.0	NM_001205231	22185.0	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	6.5	36.5	26.0	21.0	12.0	17.5
Merged-chr12-16828699-4	chr12	16828198	16829198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17733.0	NM_033270	50496.0	Mm.23296	NM_033270	ENSMUSG00000057469	E2f6	AI462434|E2F6a|E2F6b|EMA	E2F transcription factor 6	protein-coding	8.5	14.5	12.5	4.0	19.0	8.5
Merged-chr5-140347403-2	chr5	140346903	140347903	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172277, intron 7 of 10)	intron (NM_172277, intron 7 of 10)	15447.0	NM_001356584	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120013307-4	chr11	120012790	120013790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198787, intron 9 of 13)	intron (NM_001198787, intron 9 of 13)	-1477.0	NR_037225	100526518.0		NR_037225	ENSMUSG00000105524	Mir3065	mir-3065|mmu-mir-3065	microRNA 3065	ncRNA	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr3-103967993-4	chr3	103967485	103968485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163467)	promoter-TSS (NM_001163467)	-125.0	NM_001163467	18685.0	Mm.385178	NM_013629	ENSMUSG00000058388	Phtf1	AU041898|AW049785|Phft|Phtf	putative homeodomain transcription factor 1	protein-coding	11.5	33.0	17.5	6.0	18.0	10.0
Merged-chr2-150311424-4	chr2	150310909	150311909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027017, intron 3 of 3)	intron (NM_027017, intron 3 of 3)	51356.0	NM_027017	69277.0	Mm.272470	NM_027017	ENSMUSG00000063364	3300002I08Rik	2900016H11Rik	RIKEN cDNA 3300002I08 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90034646-2	chr7	90034146	90035146	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 1 of 5)	B2_Mm2|SINE|B2	5487.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	28.5	58.0	37.5	27.0	39.0	22.0
Merged-chr14-31172947-4	chr14	31172436	31173436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022656, intron 19 of 20)	intron (NM_022656, intron 19 of 20)	-4295.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107012390-4	chr11	107011883	107012883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12858.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-92861775-1	chr10	92861275	92862275	+	1000.0	f0_balb.idr	intron (NM_001347060, intron 61 of 67)	intron (NM_001347060, intron 61 of 67)	-139357.0	NM_008682	17997.0	Mm.2998	NM_008682	ENSMUSG00000019988	Nedd1	-	neural precursor cell expressed, developmentally down-regulated gene 1	protein-coding	0.0	0.0	0.0	4.0	3.0	0.0
Merged-chr5-140206043-4	chr5	140205548	140206548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152617, intron 10 of 16)	intron (NR_152617, intron 10 of 16)	-31130.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86214400-4	chr15	86213910	86214910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145476)	promoter-TSS (NM_145476)	-49.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54986377-4	chr12	54985879	54986879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013815)	promoter-TSS (NM_013815)	-43.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	53.0	57.5	44.0	47.5	67.5	51.5
Merged-chr13-109299048-4	chr13	109298532	109299532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-25712.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55556422-4	chr19	55555945	55556945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	145759.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38458923-4	chr16	38458408	38459408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009855)	promoter-TSS (NM_009855)	-25.0	NM_001359898	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172525325-4	chr1	172524827	172525827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027972, intron 1 of 11)	intron (NM_027972, intron 1 of 11)	4197.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	8.5	11.5	11.0	5.0	7.0	5.0
Merged-chr5-140642261-4	chr5	140641746	140642746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308040, intron 1 of 12)	intron (NM_001308040, intron 1 of 12)	6785.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-177489997-4	chr1	177489526	177490526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44205.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44593982-2	chr7	44593482	44594482	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008422, intron 1 of 3)	intron (NM_008422, intron 1 of 3)	3096.0	NM_001290682	16504.0	Mm.40312	NM_008422	ENSMUSG00000062785	Kcnc3	KShIIID|Kcr2-3|Kv3.3	potassium voltage gated channel, Shaw-related subfamily, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155050354-4	chr1	155049858	155050858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32906.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64085979-4	chr15	64085481	64086481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001276462)	TTS (NM_001276462)	-25533.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	39.0	74.5	56.5	26.5	101.0	88.0
Merged-chr9-79793519-4	chr9	79793023	79794023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133718)	promoter-TSS (NM_133718)	-93.0	NM_133718	69981.0	Mm.486324	NM_133718	ENSMUSG00000032328	Tmem30a	2010200I23Rik|AW540225|Cdc50a|D9Wsu20e	transmembrane protein 30A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-86021851-4	chr10	86021351	86022351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153195)	promoter-TSS (NM_153195)	-78.0	NM_153195	69754.0	Mm.44236	NM_153195	ENSMUSG00000001786	Fbxo7	2410015K21Rik|A230052G17Rik|AI117679|AW260462|C85118	F-box protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135573171-4	chr5	135572664	135573664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019577)	promoter-TSS (NM_019577)	-115.0	NM_001356630	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	1.0	33.5	18.5	1.0	37.0	20.0
Merged-chr8-3631107-4	chr8	3630614	3631614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011503)	promoter-TSS (NM_011503)	5.0	NM_011503	20911.0	Mm.7247	NM_011503	ENSMUSG00000004626	Stxbp2	C79054|Munc-18-2|Munc-18b|Munc18b|Sxtbp2|Sxtp2|Unc18-2|Unc18b|muSec1	syntaxin binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24911432-4	chr10	24910925	24911925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_105870)	TTS (NR_105870)	761.0	NR_105870	102465545.0		NR_105870	ENSMUSG00000099181	Mir6905	Gm27879|mmu-mir-6905	microRNA 6905	ncRNA	84.0	186.5	156.0	8.0	17.5	17.0
Merged-chr3-90000055-4	chr3	89999560	90000560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001165984)	TTS (NM_001165984)	1300.0	NR_045749	100503469.0	Mm.440636	NR_045749	ENSMUSG00000105552	Gm19710	-	predicted gene, 19710	ncRNA	5.5	21.0	9.5	1.0	7.5	1.5
Merged-chr15-96641627-4	chr15	96641124	96642124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134086, exon 1 of 16)	5' UTR (NM_134086, exon 1 of 16)	338.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134764468-4	chr4	134763969	134764969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145554, intron 1 of 8)	intron (NM_145554, intron 1 of 8)	3535.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55651264-4	chr4	55650756	55651756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-118781.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	62.5	147.0	131.5	60.0	111.5	151.5
Merged-chr2-71353843-4	chr2	71353323	71354323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 2 of 17)	intron (NM_172436, intron 2 of 17)	13731.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30869602-4	chr5	30869104	30870104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144525)	promoter-TSS (NM_144525)	25.0	NM_144525	68796.0	Mm.205169	NM_144525	ENSMUSG00000038828	Tmem214	1110039B18Rik|4921530J21Rik|AI841294|AU018742|C76280	transmembrane protein 214	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5939534-4	chr13	5939022	5940022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78033.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-128722234-4	chr1	128721746	128722746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-129947.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	47.0	70.5	43.5	22.0	72.5	37.0
Merged-chr14-8176548-2	chr14	8176048	8177048	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3556.0	NM_024221	68263.0	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53337591-2	chr18	53337091	53338091	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 2 of 6)	L1_Mus2|LINE|L1	80416.0	NM_008908	19038.0	Mm.4587	NM_008908	ENSMUSG00000024538	Ppic	CyP-20c	peptidylprolyl isomerase C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120453277-4	chr14	120452762	120453762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-25199.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-8422761-4	chr5	8422260	8423260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289595)	promoter-TSS (NM_001289595)	-44.0	NM_001190717	27214.0	Mm.292470	NM_013726	ENSMUSG00000002297	Dbf4	AA545217|Ask	DBF4 zinc finger	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91452748-4	chr16	91452257	91453257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12347.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4754295-4	chr16	4753793	4754793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010443, intron 1 of 5)	intron (NM_010443, intron 1 of 5)	-2653.0	NM_001357050	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40322478-4	chr9	40321979	40322979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	-1156.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59828617-4	chr15	59828135	59829135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33676.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	5.0	24.0	18.5	9.5	30.5	20.0
Merged-chr3-103279719-4	chr3	103279226	103280226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_053170, exon 1 of 20)	5' UTR (NM_053170, exon 1 of 20)	433.0	NM_053170	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	11.0	42.0	24.5	17.0	45.5	36.0
Merged-chr19-5118365-4	chr19	5117840	5118840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008451)	promoter-TSS (NM_008451)	68.0	NR_045528	16594.0	Mm.271648	NM_008451	ENSMUSG00000024862	Klc2	8030455F02Rik|AW212649|KLC 2|KLC-2	kinesin light chain 2	protein-coding	1.5	4.0	4.5	5.5	1.5	12.5
Merged-chr9-124282219-4	chr9	124281713	124282713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30481.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166713051-4	chr2	166712529	166713529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	803.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88509211-4	chr15	88508716	88509716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91086.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-77193441-4	chr5	77192939	77193939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	17766.0	NM_001289767	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	0.0	10.5	2.0	4.5	13.0	5.5
Merged-chr9-7734538-4	chr9	7734072	7735072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29505.0	NM_133739	71929.0	Mm.283293	NM_133739	ENSMUSG00000050912	Tmem123	2310075C12Rik	transmembrane protein 123	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13907702-4	chr8	13907208	13908208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347316)	promoter-TSS (NM_001347316)	-31.0	NM_025785	66822.0	Mm.37950	NM_025785	ENSMUSG00000038365	Fbxo25	9130015I06Rik|AI649137|Fbx25	F-box protein 25	protein-coding	4.0	2.0	4.0	4.0	4.5	4.0
Merged-chr16-33951094-4	chr16	33950610	33951610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15928.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119540451-4	chr4	119539967	119540967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290696, intron 1 of 11)	intron (NM_001290696, intron 1 of 11)	806.0	NM_172699	230700.0	Mm.259227	NM_172699	ENSMUSG00000032998	Foxj3	C330039G02Rik|Fhd6	forkhead box J3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94569079-3	chr16	94568577	94569577	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1129.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24950427-4	chr10	24949907	24950907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22937.0	NM_007482	11846.0	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86128452-4	chr17	86127950	86128950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030133, intron 5 of 20)	L1MC4|LINE|L1	16725.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	0.0	7.5	5.5	5.5	12.5	3.5
Merged-chr8-120717959-2	chr8	120717459	120718459	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18399.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37376298-4	chr19	37375820	37376820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010615)	promoter-TSS (NM_010615)	-83.0	NM_010615	16551.0	Mm.42203	NM_010615	ENSMUSG00000012443	Kif11	Eg5|Kif8|Kifl1|Knsl1	kinesin family member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34089616-4	chr10	34089130	34090130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162937, intron 4 of 6)	intron (NM_001162937, intron 4 of 6)	6889.0	NM_178908	103511.0	Mm.66334	NM_178908	ENSMUSG00000049872	Fam26e	BB146404|Calhm5	family with sequence similarity 26, member E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37498210-4	chr13	37497737	37498737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	152892.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.5	0.5	0.5	0.0	12.0	12.0
Merged-chr14-34502032-2	chr14	34501532	34502532	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009758, intron 1 of 12)	CpG	514.0	NM_009758	12166.0	Mm.237825	NM_009758	ENSMUSG00000021796	Bmpr1a	1110037I22Rik|ALK-3|ALK3|AU045487|BMPR-1A|BMPR-IA|Bmpr|SKR5	bone morphogenetic protein receptor, type 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81138339-4	chr10	81137824	81138824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010731, intron 1 of 2)	intron (NM_010731, intron 1 of 2)	2053.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-169531536-4	chr1	169531016	169532016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023284)	promoter-TSS (NM_023284)	-52.0	NM_001355159	66977.0	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34389717-4	chr11	34389224	34390224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025382, intron 1 of 3)	intron (NM_001025382, intron 1 of 3)	74902.0	NM_001025382	574403.0	Mm.444796	NM_001025382	ENSMUSG00000069911	Fam196b	EG574403|Gm6041	family with sequence similarity 196, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-94362777-4	chr9	94362278	94363278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	175303.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	0.5	9.0	0.5	0.0	0.5	0.5
Merged-chr15-68059987-2	chr15	68059487	68060487	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	198869.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22658105-4	chr8	22657506	22658506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4569.0	NM_011130	18970.0	Mm.123211	NM_011130	ENSMUSG00000031536	Polb	A430088C08Rik	polymerase (DNA directed), beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86568563-2	chr11	86568063	86569063	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15595.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-144255998-4	chr5	144255362	144256362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_018772, exon 2 of 3)	exon (NM_018772, exon 2 of 3)	637.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	58.5	144.5	151.0	45.5	151.0	122.5
Merged-chr1-154118119-4	chr1	154117640	154118640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-83047.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80704974-4	chr18	80704475	80705475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 1 of 9)	intron (NM_198429, intron 1 of 9)	3198.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	5.5	31.5	10.0	22.0	24.5	7.5
Merged-chr5-113635293-4	chr5	113634795	113635795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	8308.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	23.0	106.5	57.0	20.5	61.5	66.0
Merged-chr6-72414277-4	chr6	72413791	72414791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019802)	promoter-TSS (NM_019802)	-17.0	NM_019802	56316.0	Mm.19937	NM_019802	ENSMUSG00000053460	Ggcx	-	gamma-glutamyl carboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117343758-4	chr8	117343282	117344282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-5388.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17613464-4	chr10	17612968	17613968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER63B|DNA|hAT-Blackjack	-109760.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-59132734-4	chr12	59132232	59133232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165253, intron 1 of 22)	intron (NM_001165253, intron 1 of 22)	1279.0	NM_001165253	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142906794-4	chr5	142906324	142907324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007393)	promoter-TSS (NM_007393)	-70.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120577322-4	chr9	120576838	120577838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073359)	promoter-TSS (NR_073359)	7.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33684810-2	chr16	33684310	33685310	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175256, exon 1 of 15)	exon (NM_175256, exon 1 of 15)	344.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73041142-4	chr17	73040666	73041666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5|LINE|L1	-66819.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129800550-4	chr2	129800034	129801034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183262)	promoter-TSS (NM_183262)	17.0	NM_001038635	67333.0	Mm.389329	NM_183262	ENSMUSG00000037885	Stk35	1700054C12Rik|CLIK1|Stk35l1	serine/threonine kinase 35	protein-coding	66.5	121.5	115.5	73.5	182.0	83.0
Merged-chr7-63930280-4	chr7	63929782	63930782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	ORR1D2|LTR|ERVL-MaLR	8633.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	32.5	32.0	24.5	15.5	51.5	28.5
Merged-chr3-89801644-4	chr3	89801125	89802125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28016.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82081099-2	chr11	82080599	82081599	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20746.0	NM_011331	20293.0	Mm.867	NM_011331	ENSMUSG00000035352	Ccl12	MCP-5|Scya12	chemokine (C-C motif) ligand 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91676111-4	chr12	91675609	91676609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	-85622.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44860412-2	chr7	44859912	44860912	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_021549, exon 7 of 16)	exon (NM_021549, exon 7 of 16)	3009.0	NM_001290767	59047.0	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120824456-8	chr11	120823939	120824939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007988, exon 1 of 43)	5' UTR (NM_007988, exon 1 of 43)	108.0	NM_007988	14104.0	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115428214-4	chr8	115427708	115428708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	278686.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-157141230-4	chr1	157140742	157141742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177644, intron 17 of 17)	intron (NM_177644, intron 17 of 17)	-32562.0	NM_001305063	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	24.5	58.5	29.0	48.0	109.0	114.0
Merged-chr4-42999879-4	chr4	42999365	43000365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009503, intron 1 of 16)	CpG	642.0	NM_009503	269523.0	Mm.245976	NM_009503	ENSMUSG00000028452	Vcp	3110001E05|CDC48|p97|p97/VCP	valosin containing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-83266572-4	chr4	83266086	83267086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 3 of 19)	B4|SINE|B4	57603.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	56.5	169.0	78.0	91.0	324.0	135.0
Merged-chr11-48817282-6	chr11	48816751	48817751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145377, exon 1 of 6)	5' UTR (NM_145377, exon 1 of 6)	140.0	NM_145377	211007.0	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111721201-4	chr10	111720692	111721692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126919.0	NR_045344	71321.0	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13661042-1	chr8	13660542	13661542	+	1000.0	f0_balb.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	16545.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59734021-4	chr9	59733510	59734510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001172071)	TTS (NM_001172071)	16639.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107084724-4	chr3	107084209	107085209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16858.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32003186-4	chr16	32002678	32003678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177103, exon 1 of 10)	5' UTR (NM_177103, exon 1 of 10)	109.0	NM_001357087	320213.0	Mm.152890	NM_023801	ENSMUSG00000022772	Senp5	6230429P13Rik|A730063F07Rik|AI851888|BB189556|SMT3IP3	SUMO/sentrin specific peptidase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58115425-4	chr13	58114930	58115930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1783.0	NM_001362415	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	1.0	3.5	5.0	0.0	0.0	2.0
Merged-chr1-87326875-4	chr1	87326387	87327387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110212)	promoter-TSS (NM_001110212)	-111.0	NM_146112	227331.0	Mm.23065	NM_146112	ENSMUSG00000048000	Gigyf2	2610016F01Rik|A830080H02Rik|AI852361|AW259676|BC006835|Tnrc15|mKIAA0642	GRB10 interacting GYF protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58482796-4	chr16	58482260	58483260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 6 of 10)	MLT1J|LTR|ERVL-MaLR	40666.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75894428-4	chr15	75893947	75894947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172607)	promoter-TSS (NM_172607)	34.0	NM_172607	223646.0	Mm.288368	NM_172607	ENSMUSG00000022574	Naprt	9130210N20Rik|Naprt1	nicotinate phosphoribosyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104565069-4	chr8	104564562	104565562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23753.0	NM_001301165	12354.0	Mm.129265	NM_053070	ENSMUSG00000031883	Car7	AV343731|Ca7	carbonic anhydrase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120573116-4	chr11	120572603	120573603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011032, exon 1 of 11)	5' UTR (NM_011032, exon 1 of 11)	150.0	NM_011032	18453.0	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	27.0	49.5	35.5	12.0	52.5	37.5
Merged-chr2-58157148-4	chr2	58156646	58157646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139200, intron 1 of 7)	intron (NM_139200, intron 1 of 7)	2976.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34257842-4	chr17	34257340	34258340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5387.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	94.5	229.5	174.0	88.0	271.5	162.0
Merged-chr14-57665063-4	chr14	57664560	57665560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020506)	promoter-TSS (NM_020506)	-104.0	NM_020506	57258.0	Mm.202747	NM_020506	ENSMUSG00000021952	Xpo4	B430309A01Rik|mKIAA1721	exportin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-15062931-4	chr14	15062459	15063459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	242144.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	0.0	4.0	5.5	2.5	3.5	2.5
Merged-chr13-74245682-4	chr13	74245179	74246179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317351, intron 3 of 9)	intron (NM_001317351, intron 3 of 9)	-36979.0	NM_177333	211446.0	Mm.261859	NM_177333	ENSMUSG00000034152	Exoc3	2810050O03Rik|E430013E20Rik|Sec6|Sec6l1	exocyst complex component 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-13010122-4	chr17	13009628	13010628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013671, intron 2 of 4)	intron (NM_013671, intron 2 of 4)	2289.0	NM_013671	20656.0	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107066878-4	chr4	107066323	107067323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175471)	promoter-TSS (NM_175471)	43.0	NM_025500	56280.0	Mm.29517	NM_025500	ENSMUSG00000028622	Mrpl37	2300004O14Rik|AI132596|MRP-L2|Rpml2	mitochondrial ribosomal protein L37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-72761095-4	chr12	72760584	72761584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008910)	promoter-TSS (NM_008910)	-127.0	NM_008910	19042.0	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52565299-4	chr13	52564802	52565802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7923.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20784888-4	chr18	20784388	20785388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38484.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80945467-4	chr12	80944952	80945952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347416)	promoter-TSS (NM_001347416)	-47.0	NM_001347416	20384.0	Mm.43331	NM_009159	ENSMUSG00000021134	Srsf5	Sfrs5	serine/arginine-rich splicing factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34031536-4	chr11	34031029	34032029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-15399.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11705793-4	chr2	11705308	11706308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271501)	promoter-TSS (NM_001271501)	96.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52939287-2	chr2	52938787	52939787	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	81419.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150240225-4	chr4	150239683	150240683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023119, intron 2 of 11)	intron (NM_023119, intron 2 of 11)	2859.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	12.5	49.0	49.0	17.0	38.0	61.5
Merged-chr10-30803200-4	chr10	30802636	30803636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001358841, exon 1 of 16)	5' UTR (NM_001358841, exon 1 of 16)	190.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127993296-2	chr7	127992796	127993796	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023258, intron 1 of 2)	intron (NM_023258, intron 1 of 2)	571.0	NM_023258	66824.0	Mm.24163	NM_023258	ENSMUSG00000030793	Pycard	9130417A21Rik|Asc|CARD5|TMS-1|TNS1|masc	PYD and CARD domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24635633-4	chr10	24635134	24636134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	40192.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80387944-4	chr7	80387452	80388452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010194)	promoter-TSS (NM_010194)	-6.0	NM_010194	14159.0	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	43.5	151.5	118.5	50.5	118.5	79.5
Merged-chr16-55863573-4	chr16	55863067	55864067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134457, intron 3 of 5)	intron (NM_001134457, intron 3 of 5)	-24926.0	NM_001159395	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126497757-4	chr8	126497252	126498252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22687.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-53774206-4	chr1	53773725	53774725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133810, intron 2 of 7)	intron (NM_133810, intron 2 of 7)	10990.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	84.5	324.0	179.0	122.5	276.5	188.0
Merged-chr11-53350762-4	chr11	53350255	53351255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033565)	promoter-TSS (NM_033565)	-12.0	NM_033565	93736.0	Mm.395281	NM_033565	ENSMUSG00000049470	Aff4	AF5Q31|Alf4|Laf4l|MCEF	AF4/FMR2 family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-50083126-4	chr18	50082602	50083602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134131, intron 1 of 1)	intron (NM_134131, intron 1 of 1)	-29440.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	20.5	43.5	25.0	13.5	41.5	23.0
Merged-chr6-31087622-2	chr6	31087122	31088122	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24529.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39576786-4	chr1	39576311	39577311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033135, intron 1 of 6)	CpG	536.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172550707-4	chr1	172550210	172551210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040558)	promoter-TSS (NR_040558)	96.0	NR_040558	71319.0	Mm.123774	NR_040558	ENSMUSG00000085184	4933439K11Rik	-	RIKEN cDNA 4933439K11 gene	ncRNA	9.5	10.5	16.0	1.0	23.5	17.0
Merged-chr2-70968508-4	chr2	70968009	70969009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 7 of 9)	intron (NM_145524, intron 7 of 9)	49865.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103073607-4	chr2	103073123	103074123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019735)	promoter-TSS (NM_019735)	-52.0	NM_001355474	56369.0	Mm.24772	NM_019735	ENSMUSG00000010911	Apip	APIP2|CGI-29|Mmrp19	APAF1 interacting protein	protein-coding	19.0	56.5	53.0	24.5	84.0	66.5
Merged-chr13-55329916-4	chr13	55329403	55330403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016662)	promoter-TSS (NM_016662)	-173.0	NM_016662	17121.0	Mm.20350	NM_016662	ENSMUSG00000021485	Mxd3	4631412E13Rik|Mad3|bHLHc13	Max dimerization protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-108118604-4	chr4	108118116	108119116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011327)	promoter-TSS (NM_011327)	-69.0	NM_011327	20280.0	Mm.379011	NM_011327	ENSMUSG00000028603	Scp2	AA409774|AA409893|C76618|C79031|NSL-TP|SCP-2|SCP-X|SCPX|ns-LTP	sterol carrier protein 2, liver	protein-coding	46.0	155.0	110.5	40.5	119.0	83.0
Merged-chr13-113378476-4	chr13	113378002	113379002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	124342.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81452885-2	chr10	81452385	81453385	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20246.0	NM_001311127	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73716569-4	chr15	73716092	73717092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6553.0	NM_001166390	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53139482-1	chr15	53138982	53139982	+	1000.0	f0_c57.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	206701.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73138075-2	chr14	73137575	73138575	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-4435.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-92670081-4	chr7	92669574	92670574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029078)	promoter-TSS (NM_029078)	-162.0	NM_029078	74737.0	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	1.5	3.0	1.0	4.5	30.0	6.5
Merged-chr2-68825578-4	chr2	68825077	68826077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35864.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123665191-2	chr4	123664691	123665691	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_136925)	promoter-TSS (NR_136925)	-690.0	NR_136925	102633214.0	Mm.399387	NR_136925		Gm12925	-	predicted gene 12925	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-91124069-4	chr10	91123559	91124559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133668)	promoter-TSS (NM_133668)	-96.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118507292-4	chr2	118506763	118507763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie2b|DNA|hAT-Charlie	-27567.0	NM_009273	20813.0	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	3.0	3.5	4.5	2.5	3.0	3.5
Merged-chr17-81703455-4	chr17	81702937	81703937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	34950.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6546707-5	chr11	6546154	6547154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190343)	promoter-TSS (NM_001190343)	-233.0	NM_146014	216527.0	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	43.5	152.5	97.5	63.5	176.0	89.0
Merged-chr4-137864960-4	chr4	137864461	137865461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	2724.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	27.0	47.5	43.0	39.5	51.0	55.5
Merged-chr14-66264905-4	chr14	66264523	66265523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	16029.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-5203944-4	chr16	5203442	5204442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013796)	promoter-TSS (NM_013796)	70.0	NM_013796	27426.0	Mm.215641	NM_013796	ENSMUSG00000023143	Nagpa	AI596180|UCE	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-77265600-3	chr5	77265102	77266102	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011263, exon 1 of 4)	5' UTR (NM_011263, exon 1 of 4)	108.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106200102-4	chr9	106199612	106200612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026447)	promoter-TSS (NM_026447)	-879.0	NM_026447	67905.0	Mm.23018	NM_026447	ENSMUSG00000020253	Ppm1m	2810423O19Rik|AW610647|C77250|PP2Ceta	protein phosphatase 1M	protein-coding	25.0	81.0	46.0	11.0	54.5	55.5
Merged-chr10-41474315-2	chr10	41473815	41474815	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1999.0	NM_001164433	171580.0	Mm.290431	NM_138315	ENSMUSG00000019823	Mical1	MICAL|MICAL-1|Nical	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5801959-2	chr13	5801459	5802459	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	56133.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23763654-4	chr13	23763152	23764152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030609)	promoter-TSS (NM_030609)	-16.0	NM_030609	80838.0	Mm.480242	NM_030609	ENSMUSG00000049539	Hist1h1a	H1.1|H1a|H1f1|H1var3	histone cluster 1, H1a	protein-coding	19.0	54.0	42.5	21.5	65.5	71.0
Merged-chr11-101442785-2	chr11	101442285	101443285	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011289, exon 2 of 5)	exon (NM_011289, exon 2 of 5)	540.0	NM_011289	19942.0	Mm.340658	NM_011289	ENSMUSG00000063316	Rpl27	-	ribosomal protein L27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75921601-4	chr15	75921085	75922085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025412)	promoter-TSS (NM_025412)	-25.0	NM_025412	66194.0	Mm.250599	NM_025412	ENSMUSG00000022571	Pycrl	1110058B13Rik|2700073G24Rik|Pycr3	pyrroline-5-carboxylate reductase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156473199-4	chr1	156472644	156473644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 1 of 15)	intron (NM_009230, intron 1 of 15)	1184.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	126.5	339.0	267.0	113.0	289.5	258.0
Merged-chr1-46921749-4	chr1	46921234	46922234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356417, intron 1 of 10)	intron (NM_001356417, intron 1 of 10)	4042.0	NM_001356417	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	20.0	22.5	2.0	7.5	15.5	8.5
Merged-chr11-11462050-4	chr11	11461533	11462533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001185153, intron 1 of 7)	CpG	386.0	NM_015785	53604.0	Mm.9500	NM_015785	ENSMUSG00000020193	Zpbp	4930486K01Rik|Iam38|Sp38	zona pellucida binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30457978-4	chr14	30457462	30458462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131095)	promoter-TSS (NR_131095)	-74.0	NR_131095	77710.0	Mm.410773	NR_131095		4831407H17Rik	-	RIKEN cDNA 4831407H17 gene	ncRNA	2.0	1.5	0.0	0.0	5.5	3.0
Merged-chr4-21767177-4	chr4	21766672	21767672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029840)	promoter-TSS (NM_029840)	39.0	NM_029840	77032.0	Mm.87238	NM_029840	ENSMUSG00000028251	Tstd3	2610029I01Rik	thiosulfate sulfurtransferase (rhodanese)-like domain containing 3	protein-coding	0.5	3.5	2.5	0.0	8.0	0.0
Merged-chr7-143038308-4	chr7	143037790	143038790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015529, intron 2 of 3)	ERVL-B4-int|LTR|ERVL	-14460.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145832087-4	chr2	145831588	145832588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	45972.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131438726-4	chr1	131438227	131439227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	88634.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	10.5	34.0	21.0	23.0	17.0	20.5
Merged-chr1-64118367-4	chr1	64117877	64118877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	3012.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-17976053-4	chr13	17975546	17976546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17305.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65655206-4	chr3	65654695	65655695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4093.0	NR_106200	102465905.0		NR_106200	ENSMUSG00000098944	Mir8120	Gm27637|mmu-mir-8120	microRNA 8120	ncRNA	5.0	3.5	5.0	18.0	6.0	6.5
Merged-chr5-135489252-4	chr5	135488756	135489756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	CpG	55866.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119547097-4	chr2	119546623	119547623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019769)	promoter-TSS (NM_019769)	504.0	NM_172857	241624.0	Mm.212773	NM_172857	ENSMUSG00000048647	Exd1	4932702D22Rik|Exdl1|mExd1	exonuclease 3'-5' domain containing 1	protein-coding	2.5	44.5	9.5	9.5	40.5	22.0
Merged-chr16-55756917-1	chr16	55756417	55757417	+	1000.0	f0_c57.idr	Intergenic	Intergenic	65221.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-5349095-4	chr15	5348600	5349600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104913.0	NM_008965	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83654885-1	chr8	83654385	83655385	+	1000.0	f1_c57bl6.idr	intron (NM_018771, intron 1 of 6)	intron (NM_018771, intron 1 of 6)	2207.0	NM_018771	67903.0	Mm.20945	NM_018771	ENSMUSG00000019433	Gipc1	GIPC|Glut1CIP|Rgs19ip1|Semcap1|TIP-2|TaxIP2	GIPC PDZ domain containing family, member 1	protein-coding	30.5	20.0	20.0	5.5	4.5	12.0
Merged-chr7-118243239-2	chr7	118242739	118243739	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027879)	promoter-TSS (NR_027879)	398.0	NM_001031814	233789.0	Mm.309053	NM_177180	ENSMUSG00000030655	Smg1	2610207I05Rik|5430435M13Rik|C130002K18Rik|mKIAA0421	SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-40085962-4	chr1	40085461	40086461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037980)	promoter-TSS (NR_037980)	-110.0	NR_037980	100047133.0	Mm.447052	NR_037980	ENSMUSG00000097899	Gm16894	-	predicted gene, 16894	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59906101-2	chr15	59905601	59906601	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110517.0	NM_027668	71088.0	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45625525-4	chr17	45625033	45626033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23431.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3596198-4	chr5	3595696	3596696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172991, exon 1 of 5)	exon (NM_172991, exon 1 of 5)	130.0	NM_001293806	71382.0	Mm.379196	NM_027777	ENSMUSG00000005907	Pex1	5430414H02Rik|E330005K07Rik|ZWS1	peroxisomal biogenesis factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-18022471-4	chr10	18021967	18022967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028440, intron 1 of 2)	intron (NM_028440, intron 1 of 2)	623.0	NM_001359560	73112.0	Mm.276041	NM_028440	ENSMUSG00000078453	Abracl	1700028I04Rik|3110003A17Rik	ABRA C-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91357137-2	chr16	91356637	91357637	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15646.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166622690-2	chr2	166622190	166623190	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 5 of 39)	intron (NM_177782, intron 5 of 39)	58168.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89775407-2	chr3	89774907	89775907	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027315, intron 1 of 12)	intron (NM_027315, intron 1 of 12)	1798.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63496065-4	chr4	63495571	63496571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028640)	promoter-TSS (NM_028640)	-80.0	NM_001008791	73750.0	Mm.300397	NM_028640	ENSMUSG00000039137	Whrn	1110035G07Rik|AW122018|AW742671|C430046P22Rik|Dfnb31|Ush2d|wi	whirlin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164879390-4	chr2	164878894	164879894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146129)	promoter-TSS (NM_146129)	26.0	NM_146129	228866.0	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	36.5	110.0	76.0	9.5	29.0	59.5
Merged-chr8-120363949-4	chr8	120363461	120364461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-124905.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87185931-1	chr17	87185431	87186431	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	9011.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	7.0	5.5	4.5	0.0	4.5	5.0
Merged-chr7-101970203-4	chr7	101969678	101970678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133947, intron 1 of 24)	CpG	335.0	NM_133947	101706.0	Mm.27259	NM_133947	ENSMUSG00000066306	Numa1	6720401E04Rik|AA764025|AL022610|AU014979|NuMA	nuclear mitotic apparatus protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115011047-4	chr5	115010553	115011553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029012)	promoter-TSS (NM_029012)	-471.0	NM_029012	74585.0	Mm.355894	NM_029012	ENSMUSG00000029550	Sppl3	4833416I09Rik|Psl4|Usmg3	signal peptide peptidase 3	protein-coding	27.0	13.0	28.5	21.0	25.5	21.0
Merged-chr18-77858685-4	chr18	77858185	77859185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 5 of 14)	intron (NM_013831, intron 5 of 14)	-62295.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64338775-4	chr1	64338261	64339261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-194043.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-75556392-4	chr3	75555870	75556870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019745, intron 1 of 7)	CpG	482.0	NM_019745	56426.0	Mm.316473	NM_019745	ENSMUSG00000027835	Pdcd10	2410003B13Rik|Ccm3|Tfa15|Tfar15	programmed cell death 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86849805-2	chr6	86849305	86850305	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028298)	promoter-TSS (NR_028298)	288.0	NM_001040106	269774.0	Mm.221038	NM_177762	ENSMUSG00000057230	Aak1	5530400K14Rik|9630042K20|AU067724|AU067726|BC028270|C79663|D6Ertd245e|R75501|mKIAA1048	AP2 associated kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118248686-4	chr11	118248185	118249185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001112699)	promoter-TSS (NM_001112699)	-93.0	NM_011180	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61398671-2	chr18	61398171	61399171	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029879)	promoter-TSS (NR_029879)	-771.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72737090-4	chr6	72736588	72737588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079822, intron 3 of 12)	MIRb|SINE|MIR	51957.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62541711-4	chr10	62541141	62542141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14196.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10388842-4	chr19	10388418	10389418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173068)	promoter-TSS (NM_173068)	-172.0	NM_018801	54525.0	Mm.182654	NM_018801	ENSMUSG00000024743	Syt7	AI851541|B230112P13Rik	synaptotagmin VII	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25461104-4	chr2	25460629	25461629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153557)	promoter-TSS (NM_153557)	-35.0	NM_153557	227622.0	Mm.261780	NM_153557	ENSMUSG00000047617	Paxx	D930050G13Rik	non-homologous end joining factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-126996938-4	chr2	126996405	126997405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11806.0	NM_175550	108011.0	Mm.134045	NM_175550	ENSMUSG00000001998	Ap4e1	2310033A20Rik|9930028M04Rik|AV087807	adaptor-related protein complex AP-4, epsilon 1	protein-coding	6.5	21.5	24.0	12.0	21.0	14.5
Merged-chr4-105718749-4	chr4	105718246	105719246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-522467.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93512034-4	chr1	93511536	93512536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145519)	promoter-TSS (NM_145519)	-68.0	NM_145519	227377.0	Mm.243091	NM_145519	ENSMUSG00000034066	Farp2	AI465173|BC009153|D030026M03Rik|Fir|mKIAA0793	FERM, RhoGEF and pleckstrin domain protein 2	protein-coding	2.0	21.0	8.5	9.5	18.5	8.5
Merged-chr3-96226915-4	chr3	96226433	96227433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11D|LTR|ERVK	5861.0	NM_178214	319190.0	Mm.439791	NM_178214	ENSMUSG00000068854	Hist2h2be	AV127319|H2b-613|T25626	histone cluster 2, H2be	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75068908-4	chr14	75068430	75069430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 2 of 3)	MLT1D|LTR|ERVL-MaLR	52903.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120080886-4	chr1	120080374	120081374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7094.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	0.0	14.0	1.0	2.5	0.0	8.0
Merged-chr6-86585293-4	chr6	86584818	86585818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42856.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	2.5	21.5	10.0	2.5	21.5	10.0
Merged-chr8-34807226-4	chr8	34806703	34807703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176933)	promoter-TSS (NM_176933)	-407.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	18.5	54.5	24.0	2.0	21.0	15.5
Merged-chr10-13191591-2	chr10	13191091	13192091	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181470, intron 2 of 10)	B3A|SINE|B2	1546.0	NM_181470	353258.0	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 ribosome biogenesis factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-40598099-4	chr8	40597591	40598591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040699, intron 3 of 13)	MER33|DNA|hAT-Charlie	36701.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	73.5	246.5	161.5	40.5	85.5	75.5
Merged-chr4-116626849-4	chr4	116626343	116627343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081475, intron 1 of 13)	CpG	654.0	NM_001081475	50927.0	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-77610769-4	chr8	77610265	77611265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145599)	promoter-TSS (NM_145599)	-112.0	NM_145599	234463.0	Mm.273578	NM_145599	ENSMUSG00000031617	Tmem184c	8430433H16Rik|AI645453|AL033298|BC004056|Tmem34	transmembrane protein 184C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21321588-4	chr9	21321110	21322110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359227, intron 1 of 22)	intron (NM_001359227, intron 1 of 22)	891.0	NM_001199186	68682.0	Mm.148425	NM_152808	ENSMUSG00000057193	Slc44a2	1110028E10Rik|CTL2	solute carrier family 44, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-83632174-4	chr12	83631674	83632674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027349)	promoter-TSS (NM_027349)	-60.0	NM_027349	67039.0	Mm.46005	NM_027349	ENSMUSG00000010608	Rbm25	2600011C06Rik|2610015J01Rik|A130095G20Rik|AI159652|AL023075|AU043498|RNPC7	RNA binding motif protein 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141643724-4	chr4	141643209	141644209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	-19875.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	162.0	313.0	239.0	99.0	149.5	172.0
Merged-chr4-136898887-4	chr4	136898410	136899410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007572)	promoter-TSS (NM_007572)	-66.0	NM_007572	12259.0	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	91.5	201.5	201.5	112.0	252.0	166.0
Merged-chr10-40066670-4	chr10	40066159	40067159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 3 of 5)	intron (NM_001114332, intron 3 of 5)	-41391.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131103928-4	chr1	131103442	131104442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6099.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	70.0	217.5	129.0	38.0	137.5	88.0
Merged-chr2-158174058-4	chr2	158173563	158174563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17945.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-12301947-4	chr2	12301438	12302438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_138462)	promoter-TSS (NR_138462)	6.0	NR_138462	241226.0	Mm.329997	NM_001001309	ENSMUSG00000026768	Itga8	AI447669	integrin alpha 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71296481-4	chr8	71295937	71296937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	23723.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	66.0	159.5	96.5	71.0	168.0	63.0
Merged-chr2-84531466-4	chr2	84530971	84531971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-24598.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	8.5	23.5	6.5	4.5	29.0	13.5
Merged-chr16-22119049-4	chr16	22118561	22119561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	44238.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58157664-4	chr13	58157157	58158157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001048060)	promoter-TSS (NM_001048060)	8.0	NM_198004	75731.0	Mm.293919	NM_198004	ENSMUSG00000050002	Idnk	5133401N09Rik	idnK gluconokinase homolog (E. coli)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-116012714-3	chr5	116012216	116013216	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_031869)	TTS (NM_031869)	11712.0	NM_031869	19079.0	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	8.5	17.0	7.0	5.0	12.0	26.0
Merged-chr8-126939488-2	chr8	126938988	126939988	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024214, intron 3 of 4)	MT2A|LTR|ERVL	6433.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-120028380-4	chr12	120027874	120028874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82412.0	NM_001160385	217951.0	Mm.387395	NM_001160385	ENSMUSG00000048004	Tmem196	Gm528	transmembrane protein 196	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180936933-4	chr1	180936433	180937433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010094, intron 2 of 3)	intron (NM_010094, intron 2 of 3)	1911.0	NM_010094	13590.0	Mm.378911	NM_010094	ENSMUSG00000038793	Lefty1	AI450052|Ebaf|Leftb|Stra3|Tgfb4|lefty|lefty-1	left right determination factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34838229-2	chr17	34837729	34838729	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_021337)	TTS (NM_021337)	1210.0	NM_001163770	112403.0	Mm.275309	NM_033613	ENSMUSG00000040482	Dxo	Dom3z|NG6	decapping exoribonuclease	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86378795-4	chr17	86378291	86379291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 2 of 14)	intron (NM_011104, intron 2 of 14)	-91613.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	0.0	0.5	1.5	5.0	3.0	3.5
Merged-chr7-100582923-4	chr7	100582433	100583433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003559, intron 1 of 7)	CpG	197.0	NM_198831	52443.0	Mm.473730	NM_198831	ENSMUSG00000030706	Mrpl48	1810030E20Rik|2610028L11Rik|CGI-118|D4Ertd786e|L48mt|MRP-L48	mitochondrial ribosomal protein L48	protein-coding	34.5	68.0	56.0	47.5	77.0	74.0
Merged-chr1-80339275-2	chr1	80338775	80339775	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016716, intron 1 of 15)	intron (NM_016716, intron 1 of 15)	1415.0	NM_001313728	26554.0	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10694076-4	chr19	10693588	10694588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	L1MB3|LINE|L1	5353.0	NM_001361959	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53267788-4	chr18	53267278	53268278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	MMAR1|DNA|TcMar-Mariner	22116.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	39.5	91.5	94.5	54.0	62.5	78.0
Merged-chr11-117993688-4	chr11	117993187	117994187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151726, intron 1 of 9)	intron (NR_151726, intron 1 of 9)	6830.0	NR_151726	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-122872128-4	chr4	122871643	122872643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007598, intron 2 of 12)	intron (NM_007598, intron 2 of 12)	13933.0	NM_001358035	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	41.0	49.5	60.5	32.5	88.0	42.5
Merged-chr1-91057745-4	chr1	91057192	91058192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	4248.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149617114-6	chr4	149616583	149617583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290989, intron 2 of 17)	intron (NM_001290989, intron 2 of 17)	30615.0	NM_023051	65945.0	Mm.38993	NM_023051	ENSMUSG00000039953	Clstn1	1810034E21Rik|Cst-1|Cstn1	calsyntenin 1	protein-coding	13.5	14.5	9.5	17.5	19.0	29.0
Merged-chr4-117183259-2	chr4	117182759	117183759	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134471)	promoter-TSS (NM_134471)	-635.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	0.0	5.5	6.0	0.0	0.0	0.5
Merged-chr10-60257586-4	chr10	60257081	60258081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-20047.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-87266286-4	chr12	87265762	87266762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142580)	promoter-TSS (NM_001142580)	24.0	NM_001142580	104799.0	Mm.208750	NM_134044	ENSMUSG00000021038	Vipas39	6720456H09Rik|9330175H22Rik|AI413782|SPE-39|Spe39|Vipar|hSPE-39	VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61452455-4	chr18	61451953	61452953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32154.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	3.5	23.0	13.5	3.5	26.5	13.5
Merged-chr9-50774117-4	chr9	50773623	50774623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1102.0	NM_133981	102580.0	Mm.160035	NM_133981	ENSMUSG00000032059	Alg9	8230402H15Rik|AI747665|B430313H07Rik|Dibd1	asparagine-linked glycosylation 9 (alpha 1,2 mannosyltransferase)	protein-coding	3.5	5.0	5.0	2.0	5.5	5.5
Merged-chr12-41237664-2	chr12	41237164	41238164	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	213574.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59549447-4	chr4	59548943	59549943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178164)	promoter-TSS (NM_178164)	-79.0	NM_144904	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-144248429-4	chr1	144247941	144248941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015811, intron 2 of 4)	intron (NM_015811, intron 2 of 4)	663.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-89181803-4	chr18	89181294	89182294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15633.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-13601789-4	chr6	13601273	13602273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155435, intron 1 of 3)	intron (NR_155435, intron 1 of 3)	6325.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	23.5	59.5	32.5	31.0	58.0	31.5
Merged-chr16-49791172-4	chr16	49790670	49791670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64484.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134322661-2	chr1	134322161	134323161	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001144855, intron 11 of 28)	intron (NM_001144855, intron 11 of 28)	10267.0	NM_001144855	68507.0	Mm.295105	NM_001144855	ENSMUSG00000026458	Ppfia4	100042382|1110008G13Rik|AI448359|AI852265|C81506|Gm3812	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-41844366-4	chr5	41843872	41844872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310601)	promoter-TSS (NM_001310601)	-57.0	NM_001081422	665775.0	Mm.158726	NM_001081422	ENSMUSG00000061755	Bod1l	A230054D04Rik|AI853319|FAM44A|mKIAA1327	biorientation of chromosomes in cell division 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99430879-4	chr10	99430373	99431373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	167642.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163017219-4	chr2	163016704	163017704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172150)	promoter-TSS (NM_172150)	-149.0	NM_172150	245866.0	Mm.34034	NM_172150	ENSMUSG00000017858	Ift52	BC037708|NGD5	intraflagellar transport 52	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129600665-4	chr4	129600151	129601151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029748)	promoter-TSS (NM_029748)	-3.0	NM_018799	54709.0	Mm.250874	NM_018799	ENSMUSG00000028798	Eif3i	36kDa|D4Ertd632e|Eif3s2|Trip1	eukaryotic translation initiation factor 3, subunit I	protein-coding	10.5	32.0	26.5	15.5	31.5	20.0
Merged-chr3-131303193-4	chr3	131302695	131303695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027816)	promoter-TSS (NM_027816)	32.0	NM_027816	71519.0	Mm.473179	NM_027816	ENSMUSG00000027983	Cyp2u1	8430436A10Rik	cytochrome P450, family 2, subfamily u, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-60659116-4	chr19	60658624	60659624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-78101.0	NM_001172096	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	20.5	27.0	11.0	15.5	8.5	7.0
Merged-chr19-34475861-2	chr19	34475361	34476361	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009890)	promoter-TSS (NM_009890)	-726.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74721043-4	chr15	74720505	74721505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198607)	promoter-TSS (NM_198607)	-229.0	NM_198607	223626.0	Mm.268603	NM_198607	ENSMUSG00000056665	Them6	4930572J05Rik	thioesterase superfamily member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41896211-4	chr19	41895707	41896707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199447)	promoter-TSS (NM_199447)	-54.0	NM_199447	107094.0	Mm.276044	NM_199447	ENSMUSG00000035049	Rrp12	AA408556|AA536972|mKIAA0690	ribosomal RNA processing 12 homolog (S. cerevisiae)	protein-coding	18.0	57.0	27.0	13.0	36.5	21.0
Merged-chr13-110563050-4	chr13	110562554	110563554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	168010.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0.0	0.0	3.0	0.0	0.0	3.0
Merged-chr2-131233992-4	chr2	131233492	131234492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001206385)	promoter-TSS (NM_001206385)	-71.0	NM_001206383	228607.0	Mm.287226	NM_144888	ENSMUSG00000037523	Mavs	D430028G21Rik|IPS-1|Visa|cardif	mitochondrial antiviral signaling protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29641222-4	chr19	29640713	29641713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362131, intron 2 of 14)	intron (NM_001362131, intron 2 of 14)	7202.0	NM_001081213	226090.0	Mm.267131	NM_001081213	ENSMUSG00000046324	Ermp1	D19Ertd410e|D19Wsu12e|Fxna|b2b2633Clo|mKIAA1815	endoplasmic reticulum metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-104936013-2	chr14	104935513	104936513	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_015593, intron 3 of 5)	intron (NR_015593, intron 3 of 5)	178663.0	NR_040628	100502987.0	Mm.124957	NR_040628		Gm17066	-	predicted gene 17066	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-14062714-4	chr13	14062216	14063216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331178, intron 1 of 4)	intron (NM_001331178, intron 1 of 4)	772.0	NM_001331119	14593.0	Mm.148039	NM_010282	ENSMUSG00000021302	Ggps1	1810026C22Rik|9530089B04Rik|AI843169|C79210	geranylgeranyl diphosphate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134352936-4	chr5	134352423	134353423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26469.0	NR_039544	100628570.0		NR_039544	ENSMUSG00000093311	Mir3965	mmu-mir-3965|mu-mir-3965	microRNA 3965	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38232377-4	chr18	38231878	38232878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17820.0	NR_015475	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53231209-4	chr4	53230709	53231709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14987.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78176505-4	chr11	78176017	78177017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080849, intron 1 of 14)	intron (NM_080849, intron 1 of 14)	149.0	NM_080849	140859.0	Mm.23788	NM_080849	ENSMUSG00000017405	Nek8	4632401F23Rik|b2b1449Clo|jck	NIMA (never in mitosis gene a)-related expressed kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-85122131-4	chr16	85121606	85122606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	MLT1F|LTR|ERVL-MaLR	51601.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	5.0	16.0	13.5	9.0	15.5	15.0
Merged-chr3-144589277-4	chr3	144588768	144589768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053102, intron 2 of 4)	intron (NM_053102, intron 2 of 4)	18841.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89394884-6	chr3	89394379	89395379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040404, intron 1 of 1)	intron (NR_040404, intron 1 of 1)	589.0	NR_040404	545539.0	Mm.393389	NR_040403	ENSMUSG00000074466	Gm15417	-	predicted gene 15417	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20107879-4	chr11	20107380	20108380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146243, intron 1 of 8)	intron (NM_146243, intron 1 of 8)	5071.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	64.5	189.0	153.5	73.0	182.0	148.5
Merged-chr11-86749134-2	chr11	86748634	86749634	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	PB1D10|SINE|Alu	8433.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30676032-4	chr16	30675526	30676526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76303.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-14800551-4	chr14	14800052	14801052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360516)	TTS (NM_001360516)	-20263.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	78.0	141.5	84.5	102.0	147.0	102.0
Merged-chr10-63339070-4	chr10	63338557	63339557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019812)	promoter-TSS (NM_019812)	-22.0	NM_001159589	93759.0	Mm.351459	NM_019812	ENSMUSG00000020063	Sirt1	AA673258|SIR2L1|Sir2|Sir2a|Sir2alpha	sirtuin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115403866-4	chr11	115403352	115404352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361463)	promoter-TSS (NM_001361463)	100.0	NR_154991	68572.0	Mm.271062	NM_026729	ENSMUSG00000018858	Mrpl58	1110001A02Rik|1110002E03Rik|Ict1|MRP-L58	mitochondrial ribosomal protein L58	protein-coding	0.0	9.5	12.0	2.5	18.0	6.0
Merged-chr2-93047066-2	chr2	93046566	93047566	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177536)	promoter-TSS (NM_001177536)	-922.0	NM_001177536	100042784.0	Mm.102816	NM_001177536	ENSMUSG00000075028	Prdm11	8030443D09Rik|AA163972|Gm707	PR domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124610440-4	chr2	124609920	124610920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172537, exon 1 of 17)	5' UTR (NM_172537, exon 1 of 17)	124.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-16969865-4	chr11	16969329	16970329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	18419.0	NM_176982	319701.0	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	2.0	13.0	2.5	3.0	11.5	4.5
Merged-chr10-42841799-3	chr10	42841300	42842300	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18712.0	NM_172938	268297.0	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	Scm polycomb group protein like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25985774-4	chr17	25985284	25986284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347334)	promoter-TSS (NM_001347334)	12.0	NR_151779	50817.0	Mm.216072	NM_015830	ENSMUSG00000037326	Capn15	Solh	calpain 15	protein-coding	79.0	223.0	163.0	46.0	171.0	166.0
Merged-chr7-19085725-4	chr7	19085224	19086224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032418, intron 1 of 14)	intron (NM_032418, intron 1 of 14)	-1104.0	NR_037282	100526504.0		NR_037282	ENSMUSG00000092659	Mir3100	mir-3100|mmu-mir-3100	microRNA 3100	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-131269757-4	chr6	131269254	131270254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22392.0	NM_008462	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	24.0	67.0	51.0	27.5	115.0	63.5
Merged-chr4-53149901-4	chr4	53149402	53150402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	9993.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171280540-2	chr1	171280040	171281040	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008911, intron 2 of 12)	intron (NM_008911, intron 2 of 12)	646.0	NM_008911	19044.0	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	17.5	47.5	18.5	16.5	27.5	16.0
Merged-chr4-109280247-4	chr4	109279756	109280756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007943)	promoter-TSS (NM_007943)	-19.0	NM_007943	13858.0	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50182650-4	chr17	50182141	50183141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 1 of 9)	intron (NM_181397, intron 1 of 9)	7856.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90054426-4	chr9	90053917	90054917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007801, exon 1 of 12)	5' UTR (NM_007801, exon 1 of 12)	150.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	25.5	69.5	38.0	29.0	84.0	54.0
Merged-chr1-171411328-4	chr1	171410835	171411835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305677)	promoter-TSS (NM_001305677)	22.0	NM_001305676	22278.0	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	104.0	269.0	229.0	181.0	377.0	244.5
Merged-chr11-72607809-4	chr11	72607316	72608316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025985, intron 1 of 5)	CpG	555.0	NM_025985	67128.0	Mm.458052	NM_025985	ENSMUSG00000020794	Ube2g1	2700059C12Rik|AI256795|AU014992|AW552068|D130023C12Rik	ubiquitin-conjugating enzyme E2G 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124415128-4	chr6	124414650	124415650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277330)	promoter-TSS (NM_001277330)	-83.0	NM_175933	19305.0	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1-BP|PTS1R|PXR1P|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67846483-4	chr5	67845941	67846941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	990.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115060022-4	chr11	115059519	115060519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172050, intron 1 of 3)	intron (NM_172050, intron 1 of 3)	2020.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	5.0	13.0	8.0	7.0	21.5	12.5
Merged-chr1-36948124-4	chr1	36947614	36948614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-8587.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114567277-4	chr5	114566776	114567776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004180)	promoter-TSS (NM_001004180)	-975.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	4.0	7.0	5.0	3.0	8.0	2.5
Merged-chr4-46277452-3	chr4	46276948	46277948	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66746.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	0.0	0.0	1.0	0.0	2.5	1.5
Merged-chr10-7212771-4	chr10	7212274	7213274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172546)	promoter-TSS (NM_172546)	-537.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	63.5	152.0	138.5	81.5	206.5	150.5
Merged-chr9-108570837-2	chr9	108570337	108571337	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026378, intron 3 of 11)	intron (NM_026378, intron 3 of 11)	945.0	NM_026378	67789.0	Mm.458081	NM_026378	ENSMUSG00000019039	Dalrd3	6330580J24Rik|C77829|mir-425	DALR anticodon binding domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31531103-4	chr15	31530605	31531605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172606)	promoter-TSS (NM_172606)	-68.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-121446432-4	chr7	121445919	121446919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081327, intron 1 of 1)	intron (NM_001081327, intron 1 of 1)	54123.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135463581-4	chr5	135463104	135464104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	-69058.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71041514-4	chr2	71041016	71042016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 1 of 9)	L1MC3|LINE|L1	14090.0	NM_145524	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12371458-4	chr17	12370937	12371937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7172.0	NM_008877	18815.0	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57836279-3	chr10	57835789	57836789	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	41745.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17666054-2	chr12	17665554	17666554	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24755.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	2.5	12.0	0.0	2.5	7.0	2.0
Merged-chr11-115814871-4	chr11	115814365	115815365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029557, intron 1 of 10)	CpG	126.0	NM_029557	76265.0	Mm.275438	NM_029557	ENSMUSG00000020781	Tsen54	0610034P02Rik	tRNA splicing endonuclease subunit 54	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13300765-1	chr10	13300265	13301265	+	1000.0	f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	23524.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	140.0	281.5	227.5	105.5	310.5	218.5
Merged-chr7-6283759-4	chr7	6283246	6284246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2834.0	NM_001024928	384763.0	Mm.276279	NM_001024928	ENSMUSG00000054893	Zfp667	A830025F02Rik|Mip1|ZNF667	zinc finger protein 667	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102030064-4	chr5	102029570	102030570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	39851.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	13.5	43.0	14.0	19.5	49.5	21.5
Merged-chr17-70852368-4	chr17	70851880	70852880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164075)	promoter-TSS (NM_001164075)	-646.0	NM_001164075	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54902405-1	chr18	54901905	54902905	+	1000.0	f0_c57.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	87775.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57440124-4	chr9	57439616	57440616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357914)	promoter-TSS (NM_001357914)	-2.0	NM_001357916	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40117038-4	chr9	40116531	40117531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11008.0	NM_146855	258854.0	Mm.377722	NM_146855	ENSMUSG00000049073	Olfr985	MOR171-4	olfactory receptor 985	protein-coding	7.5	4.0	9.0	6.5	11.5	9.5
Merged-chr1-92082976-4	chr1	92082470	92083470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207225, intron 2 of 26)	intron (NM_207225, intron 2 of 26)	97371.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5790135-4	chr11	5789634	5790634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146309, intron 1 of 12)	L2b|LINE|L2	1651.0	NM_013810	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	4.5	40.5	24.5	21.5	14.0	40.5
Merged-chr5-149089110-4	chr5	149088622	149089622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36065.0	NM_010439	15289.0	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	0.0	12.5	5.5	0.0	11.0	3.0
Merged-chr5-36465526-2	chr5	36465026	36466026	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126488)	promoter-TSS (NR_126488)	341.0	NM_024478	17713.0	Mm.21535	NM_024478	ENSMUSG00000029198	Grpel1	AA408748|mt-GrpE#1|mt-Grpel1	GrpE-like 1, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86358363-4	chr11	86357857	86358857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080931)	promoter-TSS (NM_001080931)	-832.0	NM_001080931	327987.0	Mm.341886	NM_001080931	ENSMUSG00000034297	Med13	1110067M05Rik|D030023K18|Thrap1|Trap240	mediator complex subunit 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108710125-4	chr6	108709621	108710621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49187.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	1.0	0.0	0.0	1.0	0.0	1.0
Merged-chr14-54733731-4	chr14	54733228	54734228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 6 of 10)	intron (NM_016972, intron 6 of 10)	-21554.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	10.5	37.5	17.5	21.5	18.0	14.5
Merged-chr13-107838373-6	chr13	107837902	107838902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	Lx8|LINE|L1	51662.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	31.5	46.5	19.0	8.5	44.0	26.0
Merged-chr12-55496147-2	chr12	55495647	55496647	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3500.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105787169-4	chr1	105786664	105787664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	6441.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91359551-4	chr16	91359060	91360060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13223.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	3.5	20.5	7.5	3.5	21.5	7.5
Merged-chr16-30601596-4	chr16	30601088	30602088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177632, exon 1 of 1)	exon (NM_177632, exon 1 of 1)	1865.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118766213-4	chr10	118765718	118766718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102685.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	3.0	8.0	6.5	0.0	12.0	12.0
Merged-chr14-120477581-4	chr14	120477073	120478073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029519)	promoter-TSS (NM_029519)	-888.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28383096-4	chr7	28382635	28383635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3907.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172054222-2	chr1	172053722	172054722	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010916, exon 2 of 2)	exon (NM_010916, exon 2 of 2)	3374.0	NM_010916	18071.0	Mm.2474	NM_010916	ENSMUSG00000051251	Nhlh1	Hen1|Nscl|Tal2|bHLHa35	nescient helix loop helix 1	protein-coding	0.0	2.5	0.0	1.5	2.0	0.0
Merged-chr6-3399543-4	chr6	3399028	3400028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010156)	promoter-TSS (NM_010156)	43.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	39.0	84.0	44.5	42.0	92.0	71.0
Merged-chr5-143622463-4	chr5	143621947	143622947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011182)	promoter-TSS (NM_011182)	0.0	NM_011182	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	35.0	84.0	42.5	21.0	43.5	40.5
Merged-chr12-85394217-4	chr12	85393722	85394722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19505.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102372739-2	chr12	102372239	102373239	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 6 of 9)	intron (NM_177620, intron 6 of 9)	67074.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106751202-4	chr11	106750698	106751698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271372)	promoter-TSS (NM_001271372)	-28.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79298061-4	chr12	79297550	79298550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252562, intron 1 of 7)	intron (NM_001252562, intron 1 of 7)	699.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31202360-4	chr5	31201828	31202828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175311)	promoter-TSS (NM_175311)	-25.0	NM_175311	101023.0	Mm.45033	NM_175311	ENSMUSG00000043059	Zfp513	AW990386|D430028M17Rik|Znf513	zinc finger protein 513	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-59297583-4	chr14	59297070	59298070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172603)	promoter-TSS (NM_172603)	-48.0	NM_172603	219131.0	Mm.254918	NM_172603	ENSMUSG00000044703	Phf11a	4933417L10Rik|Phf11|Phf11l	PHD finger protein 11A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5712135-4	chr19	5711627	5712627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114595, intron 11 of 17)	intron (NM_001114595, intron 11 of 17)	7656.0	NM_010609	16530.0	Mm.440033	NM_010609	ENSMUSG00000024936	Kcnk7	2310014G03Rik|Kcnk6|Kcnk8|Knot|Mlk3	potassium channel, subfamily K, member 7	protein-coding	34.5	49.0	33.5	13.5	43.0	16.5
Merged-chr6-147799201-3	chr6	147798701	147799701	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108960.0	NR_033636	100039727.0	Mm.396220	NR_033636	ENSMUSG00000085077	1700049E15Rik	Gm15761	RIKEN cDNA 1700049E15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57692056-4	chr6	57691552	57692552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025574)	promoter-TSS (NM_025574)	26.0	NM_025574	66459.0	Mm.44201	NM_025574	ENSMUSG00000043162	Pyurf	2610022G08Rik|AI847956|Prey	Pigy upstream reading frame	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19823632-4	chr7	19823136	19824136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033601)	promoter-TSS (NM_033601)	-881.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-34768579-4	chr14	34768069	34769069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-51567.0	NM_008166	14803.0	Mm.121569	NM_008166	ENSMUSG00000041078	Grid1	GluD1|GluRdelta1	glutamate receptor, ionotropic, delta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46962390-4	chr19	46961884	46962884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028353)	promoter-TSS (NR_028353)	-33.0	NR_028353	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	42.0	115.5	133.5	38.0	98.0	143.0
Merged-chr8-68195603-4	chr8	68195041	68196041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80987.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	93.5	244.0	179.5	122.0	280.0	222.0
Merged-chr7-75638942-4	chr7	75638443	75639443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	183409.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	6.5	9.5	5.5	28.0	40.0	41.0
Merged-chr11-53314924-2	chr11	53314424	53315424	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER92C|LTR|ERV1	-9765.0	NM_026479	67966.0	Mm.288072	NM_026479	ENSMUSG00000018239	Zcchc10	2410141K03Rik|AA675321|D11Ertd416e	zinc finger, CCHC domain containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-77280839-4	chr1	77280327	77281327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	215941.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	50.0	99.5	91.5	46.5	61.5	69.5
Merged-chr19-55660341-4	chr19	55659835	55660835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	41869.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148522251-4	chr2	148521739	148522739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78704.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24351969-4	chr17	24351474	24352474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013855)	promoter-TSS (NM_013855)	-49.0	NM_013855	27410.0	Mm.239470	NM_013855	ENSMUSG00000024130	Abca3	1810036E22Rik|ABC-C|Abc3	ATP-binding cassette, sub-family A (ABC1), member 3	protein-coding	63.0	184.0	149.5	71.0	201.5	156.5
Merged-chr10-53379877-4	chr10	53379376	53380376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204983)	promoter-TSS (NM_001204983)	-25.0	NM_001204983	100038725.0	Mm.441403	NM_001204983	ENSMUSG00000038594	Cep85l	Gm9766	centrosomal protein 85-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34278257-2	chr5	34277757	34278757	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 1 of 12)	MTD|LTR|ERVL-MaLR	10067.0	NM_001015039	231125.0	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-57512461-3	chr8	57511966	57512966	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008252, intron 1 of 4)	CpG	623.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47374550-4	chr14	47374030	47375030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145953, intron 1 of 5)	intron (NM_001145953, intron 1 of 5)	670.0	NM_001145953	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	117.5	328.0	231.0	126.5	291.5	217.0
Merged-chr16-35770343-4	chr16	35769829	35770829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175111)	promoter-TSS (NM_175111)	-57.0	NR_152314	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	86.0	344.0	255.5	134.0	323.0	291.0
Merged-chr19-61265510-4	chr19	61265018	61266018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37100.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	1.5	4.0	0.0	0.0	0.0	0.0
Merged-chr10-128536478-4	chr10	128535969	128536969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10610.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-144301694-4	chr1	144301184	144302184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-52580.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122053166-2	chr10	122052666	122053666	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5851.0	NM_001081037	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23807805-4	chr18	23807313	23808313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	3843.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	33.5	75.5	47.5	34.0	78.0	46.0
Merged-chr9-101251758-4	chr9	101251227	101252227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001161362, exon 1 of 14)	5' UTR (NM_001161362, exon 1 of 14)	105.0	NM_001161362	235542.0	Mm.335386	NM_172144	ENSMUSG00000043154	Ppp2r3a	3222402P14Rik|A730042E07	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-104995791-4	chr14	104995308	104996308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A1|LTR|ERVL	118868.0	NR_040628	100502987.0	Mm.124957	NR_040628		Gm17066	-	predicted gene 17066	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77686051-4	chr11	77685561	77686561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024205)	promoter-TSS (NM_001024205)	-78.0	NM_001024205	68564.0	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13501138-4	chr10	13500641	13501641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001330198, exon 1 of 8)	5' UTR (NM_001330198, exon 1 of 8)	113.0	NM_025799	66848.0	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95230475-4	chr3	95229977	95230977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038708, intron 1 of 4)	intron (NM_001038708, intron 1 of 4)	1534.0	NM_001038708	57912.0	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83868113-4	chr6	83867614	83868614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36373.0	NM_146169	232164.0	Mm.404420	NM_146169	ENSMUSG00000045896	Paip2b	-	poly(A) binding protein interacting protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44268433-4	chr10	44267951	44268951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_053069, exon 1 of 8)	5' UTR (NM_053069, exon 1 of 8)	112.0	NM_001358596	11793.0	Mm.22264	NM_053069	ENSMUSG00000038160	Atg5	2010107M05Rik|3110067M24Rik|AW319544|Apg5l|Atg5l|C88337|Paddy	autophagy related 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86359521-4	chr1	86359042	86360042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015507)	promoter-TSS (NR_015507)	-32.0	NR_015507	319336.0	Mm.389155	NR_015507	ENSMUSG00000073627	C130036L24Rik	-	RIKEN cDNA C130036L24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73334049-4	chr14	73333546	73334546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVL-E-int|LTR|ERVL	-8224.0	NM_009029	19645.0	Mm.273862	NM_009029	ENSMUSG00000022105	Rb1	Rb|Rb-1|pRb|pp105	RB transcriptional corepressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-85326138-4	chr9	85325640	85326640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160379, intron 2 of 2)	AT_rich|Low_complexity|Low_complexity	984.0	NM_001160378	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	40.0	105.0	62.0	42.5	107.5	65.5
Merged-chr4-150909900-4	chr4	150909393	150910393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020569)	promoter-TSS (NM_020569)	28.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-28481994-2	chr6	28481495	28482495	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 1 of 23)	intron (NM_019776, intron 1 of 23)	1647.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63370319-2	chr4	63369819	63370819	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 21 of 21)	intron (NM_001045514, intron 21 of 21)	7870.0	NM_011016	18406.0	Mm.14173	NM_011016	ENSMUSG00000061540	Orm2	Agp1|Orm-2	orosomucoid 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83717242-4	chr11	83716754	83717754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8250.0	NM_007969	14038.0	Mm.1650	NM_007969	ENSMUSG00000000983	Wfdc18	Expi|Kal1|WDNM1	WAP four-disulfide core domain 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90030908-5	chr7	90030427	90031427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 1 of 5)	intron (NR_110365, intron 1 of 5)	1768.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	40.0	27.5	62.5	17.0	42.0	47.0
Merged-chr1-171366099-3	chr1	171365595	171366595	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4078.0	NM_027893	71740.0	Mm.263414	NM_027893	ENSMUSG00000006411	Nectin4	1200017F15Rik|Prr4|Pvrl4	nectin cell adhesion molecule 4	protein-coding	37.0	71.5	36.5	0.5	8.0	0.5
Merged-chr6-56652402-3	chr6	56651923	56652923	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	52276.0	NM_025520	66373.0	Mm.25642	NM_025520	ENSMUSG00000091625	Lsm5	2010208O10Rik|2310034K10Rik	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52011782-4	chr6	52011268	52012268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018773, intron 1 of 12)	intron (NM_018773, intron 1 of 12)	781.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-36036875-4	chr12	36036391	36037391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025359, intron 1 of 5)	intron (NM_025359, intron 1 of 5)	5587.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-75409363-4	chr9	75408822	75409822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027418)	promoter-TSS (NM_027418)	37.0	NM_027418	50772.0	Mm.480076	NM_015806	ENSMUSG00000042688	Mapk6	2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6	mitogen-activated protein kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98776010-4	chr11	98775546	98776546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145434)	promoter-TSS (NM_145434)	-669.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117166017-2	chr11	117165517	117166517	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33644.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180967187-4	chr2	180966705	180967705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177708)	promoter-TSS (NM_001177708)	-20.0	NM_145760	228998.0	Mm.33765	NM_145760	ENSMUSG00000027575	Arfgap1	AI115377|Arf1gap	ADP-ribosylation factor GTPase activating protein 1	protein-coding	226.0	586.0	446.5	269.0	478.5	459.5
Merged-chr1-191396677-3	chr1	191396178	191397178	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_144880, exon 1 of 13)	5' UTR (NM_144880, exon 1 of 13)	363.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-106558438-4	chr3	106557928	106558928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025582, intron 3 of 6)	intron (NM_001025582, intron 3 of 6)	-10626.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-77016177-4	chr16	77015680	77016680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 1 of 23)	intron (NM_013918, intron 1 of 23)	2111.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128408747-4	chr6	128408243	128409243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133927)	TTS (NM_133927)	8977.0	NM_001162858	60345.0	Mm.269883	NM_021717	ENSMUSG00000001520	Nrip2	AW491344|NIX1	nuclear receptor interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95514695-4	chr11	95514194	95515194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130858)	promoter-TSS (NM_130858)	-129.0	NM_130858	104079.0	Mm.22970	NM_130858	ENSMUSG00000046719	Nxph3	-	neurexophilin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55473224-2	chr13	55472731	55473731	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019813)	TTS (NM_019813)	4545.0	NR_105909	102465569.0		NR_105909	ENSMUSG00000098341	Mir6944	Gm27710|mmu-mir-6944	microRNA 6944	ncRNA	0.0	0.0	0.0	5.0	0.0	0.0
Merged-chr11-117195740-4	chr11	117195229	117196229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3932.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-37684888-4	chr16	37684395	37685395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30527.0	NM_026610	68194.0	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	0.0	0.0	1.0	0.0	3.0	0.0
Merged-chr11-58938951-4	chr11	58938444	58939444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022423)	promoter-TSS (NM_022423)	-38.0	NM_022423	108660.0	Mm.249986	NM_022423	ENSMUSG00000020496	Rnf187	2410016F01Rik|AB030190|RACO-1	ring finger protein 187	protein-coding	19.5	15.0	28.0	7.5	21.5	21.0
Merged-chr17-23983059-4	chr17	23982560	23983560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7830.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	62.0	219.5	103.0	86.5	183.0	128.5
Merged-chr7-131560344-4	chr7	131559841	131560841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009774)	promoter-TSS (NM_009774)	-29.0	NM_009774	12237.0	Mm.927	NM_009774	ENSMUSG00000066979	Bub3	AU019800|AU021329|AU043350|AW146323|C78067	BUB3 mitotic checkpoint protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-13652925-2	chr1	13652425	13653425	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145381, intron 1 of 6)	MTB|LTR|ERVL-MaLR	7584.0	NM_145381	212442.0	Mm.89572	NM_145381	ENSMUSG00000025937	Lactb2	Cgi-83|E430032H21Rik	lactamase, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-73324649-4	chr11	73324142	73325142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023113)	promoter-TSS (NM_023113)	-5.0	NM_023113	11484.0	Mm.293574	NM_023113	ENSMUSG00000020774	Aspa	Acy-2|Acy2|nur7	aspartoacylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3359532-4	chr12	3359042	3360042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5590.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147122431-2	chr4	147121931	147122931	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-53435.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121372019-4	chr14	121371509	121372509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145465, intron 1 of 10)	intron (NM_145465, intron 1 of 10)	7221.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	27.0	29.0	28.5	21.5	37.5	27.5
Merged-chr2-91183989-4	chr2	91183495	91184495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145527)	promoter-TSS (NM_145527)	-948.0	NM_145527	228355.0	Mm.36410	NM_145527	ENSMUSG00000040687	Madd	9630059K23Rik|IG20	MAP-kinase activating death domain	protein-coding	12.5	40.5	19.0	27.5	43.5	19.0
Merged-chr13-102886378-4	chr13	102885861	102886861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	126106.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-76055408-4	chr13	76054908	76055908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175495, exon 1 of 1)	3' UTR (NM_175495, exon 1 of 1)	1588.0	NM_175495	238725.0	Mm.167172	NM_175495	ENSMUSG00000045509	Gpr150	C030001A19Rik|PGR11	G protein-coupled receptor 150	protein-coding	6.5	11.5	4.5	0.0	6.5	4.5
Merged-chr11-76590878-2	chr11	76590378	76591378	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-13139.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85340182-4	chr12	85339711	85340711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145138)	promoter-TSS (NM_145138)	-849.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83125116-4	chr6	83124570	83125570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023547)	promoter-TSS (NM_023547)	-41.0	NM_023547	70020.0	Mm.27814	NM_023547	ENSMUSG00000030034	Ino80b	2510009I23Rik|HMG1YL4|Hmga1l4|Papa1|Znhit4	INO80 complex subunit B	protein-coding	0.5	21.0	16.5	10.0	22.0	18.5
Merged-chr12-99640755-2	chr12	99640255	99641255	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12781.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165043189-4	chr2	165042701	165043701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8422.0	NM_144892	228869.0	Mm.233080	NM_144892	ENSMUSG00000039804	Ncoa5	CIA	nuclear receptor coactivator 5	protein-coding	0.0	1.5	0.0	0.0	0.0	2.0
Merged-chr3-148336319-4	chr3	148335815	148336815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	618320.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.5	5.0	13.0	1.5	10.5	14.0
Merged-chr2-30362965-2	chr2	30362465	30363465	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1268.0	NM_001242407	108958.0	Mm.254974	NM_175392	ENSMUSG00000026858	Miga2	5730472N09Rik|AA408683|AI790341|C9orf54|Fam73b|R74766	mitoguardin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54894478-1	chr14	54893978	54894978	+	1000.0	f0_balb.idr	exon (NM_019402, exon 1 of 7)	exon (NM_019402, exon 1 of 7)	335.0	NM_019402	54196.0	Mm.7723	NM_019402	ENSMUSG00000022194	Pabpn1	PAB2|Pabp3|mPABII	poly(A) binding protein, nuclear 1	protein-coding	17.0	19.5	16.5	12.5	9.0	8.0
Merged-chr19-33391991-8	chr19	33391497	33392497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001167818, exon 1 of 7)	5' UTR (NM_001167818, exon 1 of 7)	298.0	NM_001167818	67795.0	Mm.204591	NM_001146342	ENSMUSG00000071573	Rnls	6530404N21Rik|AI452315|AW060440|C10orf59	renalase, FAD-dependent amine oxidase	protein-coding	16.0	96.0	37.5	58.0	70.0	73.0
Merged-chr9-40330783-4	chr9	40330235	40331235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357618, intron 3 of 20)	intron (NM_001357618, intron 3 of 20)	-2737.0	NR_040728	73558.0	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25703219-2	chr7	25702719	25703719	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011577, intron 5 of 6)	intron (NM_011577, intron 5 of 6)	15834.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-4905183-2	chr17	4904683	4905683	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-89891.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111145665-4	chr8	111145177	111146177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040363)	promoter-TSS (NR_040363)	-179.0	NR_040364	434350.0	Mm.442061	NR_040363		9430091E24Rik	-	RIKEN cDNA 9430091E24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65973394-4	chr5	65972903	65973903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081104, intron 4 of 4)	LTR84a|LTR|ERVL	6279.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31083451-2	chr17	31083006	31084006	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	MTB_Mm|LTR|ERVL-MaLR	25812.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0.0	7.0	5.5	0.0	5.0	5.0
Merged-chr9-21594309-2	chr9	21593809	21594809	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178619, exon 2 of 2)	3' UTR (NM_178619, exon 2 of 2)	-1478.0	NM_138303	74766.0	Mm.475712	NM_138303	ENSMUSG00000032182	Yipf2	1300010K09Rik	Yip1 domain family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44246655-4	chr7	44246141	44247141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025880)	promoter-TSS (NM_025880)	-81.0	NM_025880	668661.0	Mm.274492	NM_025880	ENSMUSG00000045411	2410002F23Rik	-	RIKEN cDNA 2410002F23 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120467605-4	chr11	120467101	120468101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008244)	promoter-TSS (NM_008244)	-1.0	NM_197995	70317.0	Mm.485046	NM_197995	ENSMUSG00000057594	Arl16	2600005N12Rik	ADP-ribosylation factor-like 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111059264-4	chr9	111058813	111059813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-1795.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	75.0	118.5	82.5	58.5	117.0	63.5
Merged-chr12-100110209-4	chr12	100109715	100110715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2116.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19086962-2	chr7	19086462	19087462	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_037282)	TTS (NR_037282)	134.0	NR_037282	100526504.0		NR_037282	ENSMUSG00000092659	Mir3100	mir-3100|mmu-mir-3100	microRNA 3100	ncRNA	0.0	7.0	2.0	0.0	0.5	4.5
Merged-chr15-76198800-4	chr15	76198315	76199315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201393)	promoter-TSS (NM_201393)	591.0	NM_201392	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6562522-4	chr15	6562006	6563006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17341.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-121567985-4	chr1	121567472	121568472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025860)	promoter-TSS (NM_025860)	8.0	NM_025860	66942.0	Mm.44219	NM_025860	ENSMUSG00000001674	Ddx18	2310005B10Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33981312-3	chr17	33980803	33981803	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033305)	promoter-TSS (NR_033305)	-189.0	NR_033305	433100.0	Mm.380381	NM_001013793		AA388235	-	expressed sequence AA388235	ncRNA	103.0	276.5	191.5	1.0	5.0	2.0
Merged-chr2-75792915-4	chr2	75792394	75793394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39283.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-14596192-4	chr1	14595697	14596697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	159769.0	NM_001360810	17681.0	Mm.5820	NM_010827	ENSMUSG00000025930	Msc	MyoR|bHLHa22	musculin	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr14-47186712-4	chr14	47186197	47187197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008102, intron 1 of 5)	intron (NM_008102, intron 1 of 5)	2716.0	NM_008102	14528.0	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTP-CH-I|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	5.0	4.0	8.5	16.0	17.0	26.5
Merged-chr19-5875305-4	chr19	5874793	5875793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026169)	promoter-TSS (NM_026169)	-85.0	NM_026169	67457.0	Mm.202092	NM_026169	ENSMUSG00000024816	Frmd8	1200004M23Rik|2310035N23Rik|4931429L16Rik|AU018809	FERM domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-64516612-4	chr18	64516124	64517124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027350)	promoter-TSS (NM_027350)	-67.0	NM_001142950	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-105784579-4	chr12	105784076	105785076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347440)	promoter-TSS (NM_001347440)	-121.0	NM_011112	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	27.0	46.0	30.5	27.5	55.0	43.0
Merged-chr4-126103850-4	chr4	126103353	126104353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145827)	promoter-TSS (NM_001145827)	-104.0	NM_028800	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-38187678-4	chr3	38187176	38188176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20443.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86652874-4	chr11	86652381	86653381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 5 of 11)	intron (NM_001356531, intron 5 of 11)	18394.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-67234557-4	chr14	67234046	67235046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360202)	promoter-TSS (NM_001360202)	-98.0	NM_001360202	13592.0	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-59341810-4	chr3	59341297	59342297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162884, intron 1 of 6)	Lx8b|LINE|L1	2459.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57727858-4	chr10	57727359	57728359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008863, intron 4 of 5)	intron (NM_008863, intron 4 of 5)	-57064.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30205820-4	chr2	30205341	30206341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356474)	promoter-TSS (NM_001356474)	6.0	NM_001356475	70266.0	Mm.216089	NM_172404	ENSMUSG00000039648	Kyat1	2010009K05Rik|AI182306|Ccbl1|Gtk|Kat1|KatI	kynurenine aminotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23256434-4	chr11	23255945	23256945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134014, exon 2 of 26)	5' UTR (NM_134014, exon 2 of 26)	404.0	NM_134014	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55491280-4	chr12	55490809	55491809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010907, exon 3 of 6)	exon (NM_010907, exon 3 of 6)	1338.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120263599-4	chr14	120263098	120264098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12071.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-101912779-2	chr12	101912279	101913279	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028446, exon 1 of 21)	exon (NM_028446, exon 1 of 21)	112.0	NR_152255	100504056.0	Mm.416837	NR_152255		Gm20036	-	predicted gene, 20036	ncRNA	33.0	117.0	107.0	39.5	110.0	116.0
Merged-chr14-67858949-4	chr14	67858459	67859459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_105857)	TTS (NR_105857)	786.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	31.5	55.5	39.5	64.0	126.0	76.0
Merged-chr3-116482917-4	chr3	116482415	116483415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25260.0	NM_025517	66368.0	Mm.251228	NM_025517	ENSMUSG00000000339	Rtca	2310009A18Rik|AI450277|RPC|Rtcd1	RNA 3'-terminal phosphate cyclase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-89270668-4	chr7	89270164	89271164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 4 of 14)	intron (NM_001360746, intron 4 of 14)	68123.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126773496-3	chr7	126773008	126774008	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024228, intron 9 of 9)	ORR1A4|LTR|ERVL-MaLR	-3467.0	NM_026875	66090.0	Mm.27114	NM_025347	ENSMUSG00000042675	Ypel3	0610043B10Rik|1190001G19Rik|Suap	yippee like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31394084-4	chr3	31393570	31394570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83751.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78321050-4	chr15	78320545	78321545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4755.0	NM_001358854	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	16.0	11.5	7.0	8.5	5.0	13.5
Merged-chr6-124272503-2	chr6	124272003	124273003	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32148.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-69809849-4	chr13	69809349	69810349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138596)	promoter-TSS (NM_138596)	-33.0	NM_138596	28077.0	Mm.52583	NM_138596	ENSMUSG00000021598	Med10	AA959813|AI385605|C78613|D13Wsu50e	mediator complex subunit 10	protein-coding	4.0	20.0	25.5	4.0	25.5	5.5
Merged-chr7-110313580-4	chr7	110313073	110314073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 37 of 40)	intron (NM_177324, intron 37 of 40)	91870.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-102735379-2	chr3	102734868	102735868	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040588)	promoter-TSS (NR_040588)	49.0	NR_040588	78491.0	Mm.243766	NR_040588	ENSMUSG00000086745	Tspan2os	2410057H14Rik	tetraspanin 2, opposite strand	ncRNA	0.0	0.0	0.0	3.0	0.0	0.0
Merged-chr19-53119457-4	chr19	53118958	53119958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20985.0	NM_001164099	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-142856508-2	chr1	142856008	142857008	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	-784189.0	NM_020025	26878.0	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-69206228-4	chr2	69205730	69206730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305800)	promoter-TSS (NM_001305800)	-17.0	NM_001199123	66442.0	Mm.272969	NM_025565	ENSMUSG00000005233	Spc25	2600017H08Rik|2610205L13Rik|Spbc25	SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-98005525-4	chr3	98005041	98006041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7997.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83121539-4	chr6	83121008	83122008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016757)	promoter-TSS (NM_016757)	-47.0	NM_001083922	22377.0	Mm.1109	NM_016757	ENSMUSG00000030035	Wbp1	AI255152	WW domain binding protein 1	protein-coding	2.0	15.5	7.0	3.5	6.5	4.5
Merged-chr4-43044885-4	chr4	43044394	43045394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045567, intron 1 of 7)	intron (NR_045567, intron 1 of 7)	1326.0	NR_045567	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	64.5	139.0	100.0	62.0	142.5	96.5
Merged-chr18-61489757-4	chr18	61489233	61490233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5126.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	5.5	3.0	0.5	2.0	2.0	0.5
Merged-chr4-132809259-2	chr4	132808759	132809759	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-12895.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-33314211-5	chr12	33313649	33314649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033436, intron 1 of 7)	intron (NM_001033436, intron 1 of 7)	11634.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150841334-4	chr2	150840828	150841828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 6 of 12)	B2_Mm2|SINE|B2	1242.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43855020-4	chr5	43854523	43855523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13786.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	11.0	26.5	25.0	8.5	16.0	29.0
Merged-chr14-55681965-4	chr14	55681452	55682452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145705)	promoter-TSS (NM_145705)	-135.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37093167-3	chr9	37092665	37093665	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 1 of 12)	intron (NM_001029838, intron 1 of 12)	54157.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	0.0	0.5	1.5	5.0	11.5	5.0
Merged-chr17-51854118-2	chr17	51853619	51854619	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20829.0	NM_001163632	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	3.0	0.0	0.0	2.0	1.5	0.0
Merged-chr15-25267169-4	chr15	25266658	25267658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146606.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21777274-4	chr19	21776791	21777791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1049.0	NM_001033759	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66974974-4	chr9	66974485	66975485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030717, intron 1 of 5)	CpG	499.0	NM_030717	80907.0	Mm.157882	NM_030717	ENSMUSG00000032370	Lactb	LACT-1|Lact1|Mrpl56	lactamase, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88441414-4	chr10	88440910	88441910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004164, intron 19 of 20)	L1MB5|LINE|L1	-18177.0	NM_011517	20962.0	Mm.297977	NM_011517	ENSMUSG00000020059	Sycp3	Cor1|Scp3	synaptonemal complex protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6357587-4	chr4	6357074	6358074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8106.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	39.0	179.0	102.5	68.5	150.5	118.0
Merged-chr11-118120010-2	chr11	118119510	118120510	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167746, intron 10 of 80)	intron (NM_001167746, intron 10 of 80)	9209.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6569319-4	chr15	6568799	6569799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10548.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19817624-4	chr7	19817136	19818136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033601, intron 2 of 8)	intron (NM_033601, intron 2 of 8)	5119.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122264458-4	chr8	122263942	122264942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17699.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	0.0	0.0	3.5	1.0	0.0	1.0
Merged-chr11-8580017-4	chr11	8579510	8580510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 3 of 30)	intron (NM_001083587, intron 3 of 30)	84525.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	79.5	159.0	147.5	84.5	201.5	181.5
Merged-chr5-53385709-4	chr5	53385182	53386182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	118576.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-18672245-1	chr19	18671745	18672745	+	1000.0	f1_c57bl6.idr	intron (NM_026120, intron 1 of 7)	intron (NM_026120, intron 1 of 7)	1465.0	NM_026120	67383.0	Mm.306602	NM_026120	ENSMUSG00000024726	Carnmt1	2410127L17Rik	carnosine N-methyltransferase 1	protein-coding	5.0	14.5	21.0	14.5	5.5	19.0
Merged-chr11-59213504-1	chr11	59213004	59214004	+	1000.0	f1_c57bl6.idr	5' UTR (NM_001130408, exon 2 of 5)	5' UTR (NM_001130408, exon 2 of 5)	5143.0	NM_024210	67862.0	Mm.358708	NM_024210	ENSMUSG00000020441	2310033P09Rik	Mmtag2	RIKEN cDNA 2310033P09 gene	protein-coding	1.0	0.0	5.5	0.0	6.0	1.5
Merged-chr6-116131937-4	chr6	116131431	116132431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	MIR|SINE|MIR	61443.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62282675-2	chr4	62282186	62283186	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-3743.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	1.0	8.5	6.5	0.0	2.5	8.5
Merged-chr10-127289956-4	chr10	127289440	127290440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033072)	promoter-TSS (NM_033072)	-853.0	NM_007837	13198.0	Mm.110220	NM_007837	ENSMUSG00000025408	Ddit3	CHOP-10|CHOP10|chop|gadd153	DNA-damage inducible transcript 3	protein-coding	0.0	5.0	2.0	0.0	7.5	2.5
Merged-chr19-34520382-4	chr19	34519880	34520880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	7094.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6430113-4	chr17	6429612	6430612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009342)	promoter-TSS (NM_009342)	0.0	NM_009342	21648.0	Mm.1948	NM_009342	ENSMUSG00000096255	Dynlt1b	AGS2|Dynlt1|Tctex-1|Tctex1	dynein light chain Tctex-type 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35813878-1	chr17	35813378	35814378	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-7835.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	25.5	54.0	33.0	22.5	20.5	11.5
Merged-chr12-12262766-2	chr12	12262266	12263266	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	627.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90237971-4	chr9	90237454	90238454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	32815.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120917668-4	chr7	120917162	120918162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025298)	promoter-TSS (NM_025298)	-82.0	NM_025298	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	0.5	1.0	2.5	0.0	16.5	2.0
Merged-chr8-127815005-4	chr8	127814526	127815526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	463199.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0.5	23.0	5.0	0.5	5.5	7.0
Merged-chr11-106788495-4	chr11	106787972	106788972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177088)	promoter-TSS (NM_177088)	22.0	NM_007840	13207.0	Mm.491096	NM_007840	ENSMUSG00000020719	Ddx5	2600009A06Rik|G17P1|HUMP68|Hlr1|p68	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	protein-coding	43.5	102.0	45.0	11.0	92.5	66.5
Merged-chr1-165738087-4	chr1	165737581	165738581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25677.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-15729012-4	chr6	15728502	15729502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 2 of 4)	intron (NM_175088, intron 2 of 4)	8341.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-29847960-4	chr16	29847459	29848459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131165.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	10.5	14.5	7.0	12.0	40.5	19.0
Merged-chr10-43541022-4	chr10	43540535	43541535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026411)	promoter-TSS (NM_026411)	-17.0	NM_026411	67851.0	Mm.209953	NM_026411	ENSMUSG00000019797	1700021F05Rik	-	RIKEN cDNA 1700021F05 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27625502-4	chr15	27625007	27626007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013792, intron 1 of 6)	intron (NM_001013792, intron 1 of 6)	5186.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119086333-4	chr11	119085840	119086840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007625)	promoter-TSS (NM_007625)	-103.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120588024-2	chr5	120587524	120588524	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029408)	promoter-TSS (NM_029408)	589.0	NM_145853	252972.0	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-9747817-2	chr1	9747320	9748320	+	1000.0	f0_balb.idr|f0_c57.idr	non-coding (NR_040462, exon 1 of 4)	non-coding (NR_040462, exon 1 of 4)	172.0	NR_040462	73331.0	Mm.460470	NR_040462		1700034P13Rik	-	RIKEN cDNA 1700034P13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-106031776-4	chr12	106031276	106032276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029843, intron 1 of 13)	intron (NM_001029843, intron 1 of 13)	21513.0	NM_001029843	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	5.0	27.0	8.0	0.0	18.5	4.5
Merged-chr19-43920673-3	chr19	43920187	43921187	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028029, intron 1 of 15)	intron (NM_028029, intron 1 of 15)	19511.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	9.0	15.5	9.5	3.5	4.0	9.5
Merged-chr8-83332548-4	chr8	83332045	83333045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170691)	promoter-TSS (NM_001170691)	-59.0	NM_178736	244548.0	Mm.38762	NM_178736	ENSMUSG00000035151	Elmod2	9830169G11Rik	ELMO/CED-12 domain containing 2	protein-coding	39.0	92.0	40.0	25.5	48.5	35.5
Merged-chr3-28012417-4	chr3	28011933	28012933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 1 of 25)	intron (NM_008875, intron 1 of 25)	28262.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82568125-2	chr11	82567625	82568625	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65228.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83560605-4	chr11	83560100	83561100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	18036.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122920197-4	chr7	122919695	122920695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50264.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4723009-4	chr16	4722507	4723507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	-3354.0	NM_001136066	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71136813-4	chr17	71136317	71137317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-46715.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31207372-2	chr14	31206872	31207872	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022656)	promoter-TSS (NM_022656)	-546.0	NM_001347583	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-49894937-3	chr14	49894441	49895441	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_146494, exon 2 of 2)	exon (NM_146494, exon 2 of 2)	7000.0	NM_146494	258487.0	Mm.270514	NM_146494	ENSMUSG00000048933	Olfr722	MOR241-3	olfactory receptor 722	protein-coding	8.5	23.0	21.0	3.5	5.5	1.5
Merged-chr4-35225999-7	chr4	35225494	35226494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081343)	promoter-TSS (NM_001081343)	-114.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147542460-4	chr5	147541966	147542966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028291, intron 16 of 18)	intron (NM_028291, intron 16 of 18)	112310.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	99.5	190.5	146.5	94.0	195.5	148.0
Merged-chr15-72837127-4	chr15	72836638	72837638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164641, intron 17 of 17)	intron (NM_001164641, intron 17 of 17)	-26814.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	49.0	44.0	25.5	9.0	26.0	20.5
Merged-chr10-60277682-4	chr10	60277170	60278170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146120)	promoter-TSS (NM_001146120)	42.0	NM_001146121	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32321313-4	chr17	32320814	32321814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131218)	promoter-TSS (NR_131218)	-76.0	NR_131218	56399.0	Mm.328945	NM_019774	ENSMUSG00000024045	Akap8	1200016A02Rik|AA673585|AKAP-8|AKAP95|AU015639	A kinase (PRKA) anchor protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-75547367-4	chr9	75546871	75547871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357828, intron 1 of 10)	intron (NM_001357828, intron 1 of 10)	12286.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	16.5	18.0	29.0	12.0	8.5	10.5
Merged-chr1-132312888-4	chr1	132312397	132313397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3228.0	NM_001195025	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	0.0	7.0	9.5	0.0	7.0	9.0
Merged-chr9-49055568-4	chr9	49055077	49056077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012039)	promoter-TSS (NM_012039)	-4.0	NM_012039	26951.0	Mm.24791	NM_012039	ENSMUSG00000032264	Zw10	6330566F14Rik|MmZw10	zw10 kinetochore protein	protein-coding	5.5	14.5	10.0	6.5	46.0	18.0
Merged-chr19-43885269-4	chr19	43884778	43885778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028029, intron 4 of 15)	intron (NM_028029, intron 4 of 15)	-5510.0	NM_001306088	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102401111-4	chr2	102400619	102401619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020267)	promoter-TSS (NM_020267)	-219.0	NM_020267	80985.0	Mm.315002	NM_020267	ENSMUSG00000027189	Trim44	Dipb|Mc7	tripartite motif-containing 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-63812462-4	chr5	63811984	63812984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029554)	promoter-TSS (NM_029554)	-11.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	9.5	17.0	20.0	6.0	14.5	7.0
Merged-chr5-145201898-4	chr5	145201371	145202371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023322)	promoter-TSS (NM_023322)	11.0	NM_023322	67235.0	Mm.432480	NM_023322	ENSMUSG00000029627	Zkscan14	2310046C23Rik|2810437E14Rik|Zfp99|Znf394	zinc finger with KRAB and SCAN domains 14	protein-coding	88.5	185.5	112.5	68.5	177.0	185.5
Merged-chr3-9759291-4	chr3	9758799	9759799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 1 of 7)	intron (NM_053182, intron 1 of 7)	74380.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44315270-2	chr19	44314719	44315719	+	1000.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	12048.0	NR_039574	100628619.0		NR_039574	ENSMUSG00000093315	Mir5114	mmu-mir-5114|mu-mir-5114	microRNA 5114	ncRNA	144.0	420.0	292.5	143.0	344.0	259.5
Merged-chr11-114883027-4	chr11	114882531	114883531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7010.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	1.5	12.5	15.5	2.0	6.5	8.0
Merged-chr14-62001766-4	chr14	62001257	62002257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	291222.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	11.5	6.0	10.5	11.5	6.0	10.5
Merged-chr10-93095380-4	chr10	93094883	93095883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13787.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	30.5	12.0	23.5	4.0	4.5	6.0
Merged-chr13-51855791-2	chr13	51855291	51856291	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9116.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-88718473-4	chr11	88717953	88718953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001201341)	promoter-TSS (NM_001201341)	-186.0	NM_001201341	76626.0	Mm.400451	NM_054043	ENSMUSG00000069769	Msi2	1700105C15Rik|AI451722|AI563628|AW489193|Msi2h	musashi RNA-binding protein 2	protein-coding	6.0	15.0	16.5	3.5	12.5	16.0
Merged-chr5-30232521-4	chr5	30232020	30233020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_137634)	promoter-TSS (NR_137634)	-61.0	NM_027652	28042.0	Mm.168854	NM_027652	ENSMUSG00000075703	Selenoi	4933402G07Rik|AI448296|AI452230|C79563|D5Wsu178e|Ept1|SELI|mKIAA1724	selenoprotein I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94584592-4	chr8	94584068	94585068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028221, intron 5 of 7)	intron (NM_028221, intron 5 of 7)	17158.0	NM_028221	102122.0	Mm.250425	NM_028221	ENSMUSG00000031774	Fam192a	1700001O11Rik|2310065K24Rik|AI596259|Nip30	family with sequence similarity 192, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131277016-4	chr1	131276522	131277522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019777, intron 2 of 21)	intron (NM_019777, intron 2 of 21)	2541.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91461400-4	chr16	91460918	91461918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie7|DNA|hAT-Charlie	-3686.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	74.5	193.5	123.5	67.0	249.5	163.0
Merged-chr9-21320694-4	chr9	21320198	21321198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199186)	promoter-TSS (NM_001199186)	-21.0	NM_001359227	68682.0	Mm.148425	NM_152808	ENSMUSG00000057193	Slc44a2	1110028E10Rik|CTL2	solute carrier family 44, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-14112959-4	chr16	14112461	14113461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081154, intron 26 of 26)	intron (NM_001081154, intron 26 of 26)	46313.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67174727-4	chr15	67174250	67175250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 1 of 8)	intron (NM_009177, intron 1 of 8)	2132.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	49.0	192.0	113.5	54.0	200.0	118.5
Merged-chr4-148898588-2	chr4	148898088	148899088	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027195, intron 3 of 15)	intron (NM_027195, intron 3 of 15)	53734.0	NR_154553	108168987.0	Mm.393596	NR_154553		Gm13205	AA408865	predicted gene 13205	ncRNA	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr4-101655496-1	chr4	101654996	101655996	+	1000.0	f1_balb.idr	intron (NM_175036, intron 2 of 3)	intron (NM_175036, intron 2 of 3)	7713.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	73.0	249.5	163.5	80.0	182.5	142.0
Merged-chr10-96015943-4	chr10	96015429	96016429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001932, intron 13 of 28)	intron (NM_001001932, intron 13 of 28)	75266.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-75521872-4	chr1	75521383	75522383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027886, intron 2 of 24)	CpG-327	354.0	NM_027886	71728.0	Mm.312650	NM_027886	ENSMUSG00000026213	Stk11ip	1200014D22Rik|BB131189|LIP1|LKB1IP	serine/threonine kinase 11 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172566451-3	chr1	172565946	172566946	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	6540.0	NR_027644	240916.0	Mm.71940	NM_177723	ENSMUSG00000049598	Vsig8	A030011M19|EG240916	V-set and immunoglobulin domain containing 8	protein-coding	43.0	33.0	57.0	0.5	3.5	3.0
Merged-chr10-122745872-4	chr10	122745341	122746341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	ORR1F|LTR|ERVL-MaLR	66526.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110476754-5	chr9	110476270	110477270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010628)	promoter-TSS (NM_010628)	-76.0	NM_177771	270201.0	Mm.41744	NM_177771	ENSMUSG00000054792	Klhl18	A930041K15|AW545966	kelch-like 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113187895-2	chr12	113187415	113188415	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153776, intron 1 of 1)	CpG	2012.0	NM_153776	69195.0	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51967611-4	chr11	51967109	51968109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029976)	promoter-TSS (NM_029976)	-22.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127347049-2	chr7	127346549	127347549	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CTAAT)n|Simple_repeat|Simple_repeat	-1735.0	NM_146202	233890.0	Mm.23031	NM_146202	ENSMUSG00000047371	Zfp768	BC026432|Znf768	zinc finger protein 768	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80183860-4	chr11	80183371	80184371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028019)	promoter-TSS (NM_028019)	-1.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	84.5	270.0	163.0	155.0	336.0	194.5
Merged-chr7-127967307-4	chr7	127966846	127967846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347649)	promoter-TSS (NM_001347649)	-133.0	NM_001347649	233908.0	Mm.277680	NM_139149	ENSMUSG00000030795	Fus	D430004D17Rik|D930039C12Rik|Fus1|Tls	fused in sarcoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118459314-4	chr11	118458843	118459843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER73|LTR|ERVL	-4348.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-33358665-4	chr5	33358146	33359146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021500, intron 2 of 8)	intron (NM_021500, intron 2 of 8)	-20050.0	NR_153108	71101.0	Mm.132178	NM_027674	ENSMUSG00000037355	Uvssa	4933407H18Rik|D330017J19Rik|Kiaa1530|mKIAA1530	UV stimulated scaffold protein A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97114719-2	chr11	97114219	97115219	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_019507, exon 1 of 6)	exon (NM_019507, exon 1 of 6)	612.0	NM_019507	57765.0	Mm.94519	NM_019507	ENSMUSG00000001444	Tbx21	TBT1|Tbet|Tblym	T-box 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-194879372-2	chr1	194878872	194879872	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57371.0	NR_039539	100628615.0		NR_039539	ENSMUSG00000092633	Mir3962	mmu-mir-3962|mu-mir-3962	microRNA 3962	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84988648-3	chr15	84988146	84989146	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033273)	promoter-TSS (NM_001033273)	-675.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-57656205-4	chr18	57655706	57656706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311063, intron 5 of 5)	L1MB2|LINE|L1	-17621.0	NR_045360	70157.0	Mm.490532	NR_045360		2210409D07Rik	-	RIKEN cDNA 2210409D07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25518735-4	chr8	25518235	25519235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010206)	promoter-TSS (NM_010206)	-24.0	NM_001079909	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69699981-4	chr3	69699458	69700458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22097.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127290648-4	chr10	127290145	127291145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007837)	promoter-TSS (NM_007837)	-148.0	NM_007837	13198.0	Mm.110220	NM_007837	ENSMUSG00000025408	Ddit3	CHOP-10|CHOP10|chop|gadd153	DNA-damage inducible transcript 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55824224-4	chr12	55823727	55824727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2711.0	NM_001286263	56784.0	Mm.292180	NM_019994	ENSMUSG00000021027	Ralgapa1	2310003F20Rik|4930400K19Rik|AI563624|GRIPE|Garnl1|Tulip1|mKIAA0884	Ral GTPase activating protein, alpha subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81406062-2	chr10	81405562	81406562	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 7 of 8)	intron (NM_026756, intron 7 of 8)	-3513.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150087755-2	chr4	150087255	150088255	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177366, exon 1 of 4)	exon (NM_177366, exon 1 of 4)	252.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	1.0	2.5	0.5	4.0	1.5	0.0
Merged-chr11-103966485-4	chr11	103965987	103966987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304574)	promoter-TSS (NM_001304574)	-238.0	NM_001304574	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	41.0	57.5	58.5	37.5	87.5	70.5
Merged-chr2-73586601-2	chr2	73586101	73587101	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153820, intron 1 of 1)	MTC|LTR|ERVL-MaLR	1741.0	NR_153820	102633437.0		NR_153820		Chrna1os	Gm13705|Gm31264	cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle), opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45366209-2	chr7	45365709	45366709	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015480)	promoter-TSS (NR_015480)	48.0	NR_015480	50994.0	Mm.389897	NM_016664	ENSMUSG00000091510	Mtag2	MAG	metastasis associated gene 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117403917-4	chr2	117403417	117404417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61040.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11781930-4	chr11	11781448	11782448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27014.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	2.0	2.5	10.5	0.0	0.0	15.5
Merged-chr1-161897385-4	chr1	161896889	161897889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20707.0	NM_001357402	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	96.0	148.5	118.0	108.0	183.5	118.5
Merged-chr3-137864443-4	chr3	137863943	137864943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316995)	promoter-TSS (NM_001316995)	-44.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86241788-4	chr12	86241307	86242307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324488)	promoter-TSS (NM_001324488)	-51.0	NM_027405	70373.0	Mm.252967	NM_027405	ENSMUSG00000021254	Gpatch2l	1700020O03Rik|4732487G21Rik|A630090I05Rik|Kiaa1152	G patch domain containing 2 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95868990-4	chr13	95868433	95869433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	22989.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	31.5	183.0	118.5	6.0	58.5	19.0
Merged-chr12-35047110-4	chr12	35046617	35047617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001014973)	promoter-TSS (NM_001014973)	-72.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	135.5	412.5	286.0	130.0	369.0	315.5
Merged-chr12-110776217-4	chr12	110775716	110776716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347428, intron 1 of 2)	intron (NM_001347428, intron 1 of 2)	38284.0	NM_001347428	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102034320-4	chr5	102033841	102034841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	35580.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135949769-2	chr4	135949269	135950269	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357530, intron 1 of 9)	intron (NM_001357530, intron 1 of 9)	2363.0	NM_001357530	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-143951311-2	chr2	143950811	143951811	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024281, intron 19 of 23)	intron (NM_024281, intron 19 of 23)	35980.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25470393-4	chr14	25469905	25470905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	11220.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24173391-4	chr10	24172875	24173875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016797, intron 2 of 9)	intron (NM_016797, intron 2 of 9)	24058.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-115487748-2	chr9	115487242	115488242	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	105923.0	NR_130329	100316675.0		NR_130329	ENSMUSG00000080409	Mir467h	Mirn467h|mmu-mir-467h	microRNA 467h	ncRNA	45.5	76.0	35.5	26.5	28.0	12.5
Merged-chr1-72711922-4	chr1	72711443	72712443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009084, intron 2 of 3)	intron (NM_009084, intron 2 of 3)	683.0	NM_009084	19981.0	Mm.21529	NM_009084	ENSMUSG00000046330	Rpl37a	-	ribosomal protein L37a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32292700-4	chr19	32292214	32293214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 2 of 9)	intron (NM_144792, intron 2 of 9)	56602.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153751818-4	chr1	153751227	153752227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011882, intron 1 of 8)	ORR1A2|LTR|ERVL-MaLR	2301.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61074818-4	chr18	61074334	61075334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008809, intron 14 of 22)	Charlie15b|DNA|hAT-Charlie	29684.0	NM_008809	18596.0	Mm.4146	NM_008809	ENSMUSG00000024620	Pdgfrb	AI528809|CD140b|PDGFR-1|Pdgfr	platelet derived growth factor receptor, beta polypeptide	protein-coding	15.5	66.0	28.0	11.5	19.5	18.0
Merged-chr10-80434095-4	chr10	80433592	80434592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164151)	promoter-TSS (NM_001164151)	-439.0	NM_001164148	21423.0	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-40308226-4	chr18	40307701	40308701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026135, intron 1 of 1)	intron (NM_026135, intron 1 of 1)	49840.0	NM_026135	383348.0	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167805158-4	chr2	167804670	167805670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	113993.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25471344-4	chr14	25470859	25471859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	12174.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	23.0	23.0	40.5	23.5	33.5	17.0
Merged-chr4-41314980-4	chr4	41314472	41315472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026893)	promoter-TSS (NM_026893)	-71.0	NM_026893	68970.0	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91588498-4	chr12	91588020	91589020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175335, intron 1 of 8)	CpG	1129.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164942073-2	chr2	164941573	164942573	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6146.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149137523-4	chr4	149136995	149137995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027263, exon 1 of 5)	exon (NM_027263, exon 1 of 5)	105.0	NM_027263	69928.0	Mm.260893	NM_027263	ENSMUSG00000073705	Cenps	2610040C18Rik|2810407L01Rik|Apitd1|CENP-S	centromere protein S	protein-coding	17.0	31.0	35.5	17.0	28.5	35.0
Merged-chr18-30513808-4	chr18	30513297	30514297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	240932.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31402212-4	chr14	31401714	31402714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	L1M3|LINE|L1	15463.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3377120-4	chr19	3376600	3377600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 14 of 18)	intron (NM_013495, intron 14 of 18)	-11757.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43130573-2	chr5	43130073	43131073	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102890.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0.0	5.5	6.0	1.0	8.0	6.0
Merged-chr13-54997124-1	chr13	54996624	54997624	+	1000.0	f1_c57bl6.idr	intron (NM_001311128, intron 5 of 14)	intron (NM_001311128, intron 5 of 14)	23695.0	NM_001206390	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	9.5	1.0	0.0	6.0	0.0	1.0
Merged-chr8-77452675-2	chr8	77452175	77453175	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 1 of 22)	intron (NM_030113, intron 1 of 22)	-64381.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98814708-4	chr13	98814263	98815263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172591, intron 1 of 25)	CpG	686.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	78.0	178.0	179.0	85.5	208.5	144.5
Merged-chr12-117481890-4	chr12	117481391	117482391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34588.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18898123-4	chr2	18897622	18898622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 3 of 9)	intron (NM_008845, intron 3 of 9)	-96304.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50554856-4	chr9	50554340	50555340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357222, exon 1 of 6)	5' UTR (NM_001357222, exon 1 of 6)	140.0	NM_001357222	16173.0	Mm.1410	NM_008360	ENSMUSG00000039217	Il18	Igif|Il-18	interleukin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-78868892-8	chr2	78868388	78869388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009454)	promoter-TSS (NM_009454)	-159.0	NM_009454	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32760636-4	chr19	32760152	32761152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 1 of 8)	intron (NM_008960, intron 1 of 8)	3075.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24688576-2	chr5	24688076	24689076	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305264, intron 1 of 14)	intron (NM_001305264, intron 1 of 14)	2761.0	NM_001305264	53312.0	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-48799648-2	chr11	48799148	48800148	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008143)	promoter-TSS (NM_008143)	-712.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39936703-4	chr1	39936198	39937198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 2 of 29)	intron (NM_001252202, intron 2 of 29)	35785.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123862827-3	chr5	123862326	123863326	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030701)	TTS (NM_030701)	2690.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	47.5	115.0	55.5	38.0	110.5	63.0
Merged-chr4-44168321-4	chr4	44167815	44168815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175201)	promoter-TSS (NM_175201)	-32.0	NM_001038993	73469.0	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122644393-4	chr5	122643930	122644930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038845, intron 1 of 12)	intron (NM_001038845, intron 1 of 12)	519.0	NM_001038887	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44011595-4	chr10	44011088	44012088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6742.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123076760-2	chr5	123076260	123077260	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039723, intron 1 of 11)	CpG	485.0	NM_001039723	330189.0	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	22.5	47.5	45.5	26.5	45.0	52.0
Merged-chr11-69848250-2	chr11	69847725	69848725	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_023564, exon 6 of 8)	exon (NM_023564, exon 6 of 8)	1581.0	NR_033133	70310.0	Mm.28874	NM_023564	ENSMUSG00000019461	Plscr3	2210403O21Rik|2610037N06Rik|ESTM3|X83310	phospholipid scramblase 3	protein-coding	2.0	0.0	0.0	3.5	0.0	2.0
Merged-chr2-4917547-4	chr2	4917061	4918061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1435.0	NM_010726	16922.0	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-56417661-4	chr9	56417156	56418156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025812)	promoter-TSS (NM_025812)	394.0	NM_172924	244895.0	Mm.490331	NM_172924	ENSMUSG00000074305	Peak1	1110049L02Rik|9530046P14|AA690169|BE132841|C230081A13Rik|SGK269|mKIAA2002	pseudopodium-enriched atypical kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108339207-4	chr9	108338716	108339716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001329528, exon 1 of 3)	5' UTR (NM_001329528, exon 1 of 3)	136.0	NM_001329527	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	20.0	22.5	34.0	11.5	44.5	27.5
Merged-chr13-119713267-4	chr13	119712770	119713770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175538, intron 3 of 3)	intron (NM_175538, intron 3 of 3)	22919.0	NM_001291439	208715.0	Mm.61526	NM_145942	ENSMUSG00000093930	Hmgcs1	B130032C06Rik	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-119064251-2	chr10	119063751	119064751	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-13752.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5990087-4	chr18	5989599	5990599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	145999.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	8.0	32.0	39.0	27.0	55.0	40.5
Merged-chr2-73892819-4	chr2	73892290	73893290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284376)	promoter-TSS (NM_001284376)	-151.0	NM_001284370	11909.0	Mm.209903	NM_009715	ENSMUSG00000027104	Atf2	Atf-2|CRE-BP|Creb2|D130078H02Rik|D18875|Tg(Gzma-Klra1)7Wum|mXBP	activating transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99183964-4	chr7	99183488	99184488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1275.0	NM_026384	67800.0	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	25.5	59.0	28.5	26.0	108.5	49.0
Merged-chr7-100862733-4	chr7	100862234	100863234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177073, intron 1 of 10)	intron (NM_177073, intron 1 of 10)	679.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-53610388-4	chr9	53609885	53610885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144784)	promoter-TSS (NM_144784)	-35.0	NM_144784	110446.0	Mm.293233	NM_144784	ENSMUSG00000032047	Acat1	6330585C21Rik|Acat	acetyl-Coenzyme A acetyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8870567-4	chr10	8870074	8871074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	15496.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46645754-2	chr17	46645262	46646262	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001316742)	promoter-TSS (NM_001316742)	318.0	NM_001357130	74764.0	Mm.279599	NM_029091	ENSMUSG00000003546	Klc4	1200014P03Rik|AA408085|AW146303|Knsl8	kinesin light chain 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25210942-2	chr2	25210442	25211442	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001310157, exon 1 of 12)	5' UTR (NM_001310157, exon 1 of 12)	547.0	NM_021393	58202.0	Mm.116418	NM_021393	ENSMUSG00000013465	Nelfb	A730008L03Rik|AB041607|AI663983|Cobra1|Nelf-b	negative elongation factor complex member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4292825-1	chr7	4292325	4293325	+	1000.0	f1_balb.idr	Intergenic	RMER16A3|LTR|ERVK	18636.0	NM_008848	18729.0	Mm.326531	NM_008848		Pira6	12M1|Pira10|p91B	paired-Ig-like receptor A6	protein-coding	79.5	110.0	86.0	1.5	13.5	15.5
Merged-chr4-43470496-4	chr4	43469982	43470982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	13227.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	14.0	12.5	15.5	15.0	25.5	15.5
Merged-chr19-18591254-1	chr19	18590754	18591754	+	1000.0	f0_balb.idr	intron (NM_017375, intron 5 of 9)	MER20|DNA|hAT-Charlie	40559.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	1.5	3.0	4.5	4.0	4.5	1.5
Merged-chr8-33731826-4	chr8	33731302	33732302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167921)	promoter-TSS (NM_001167921)	-112.0	NM_001167921	68153.0	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding	37.5	48.0	42.0	24.0	72.5	62.0
Merged-chr10-82697551-4	chr10	82697040	82698040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1467.0	NM_001081218	67933.0	Mm.127405	NM_026462	ENSMUSG00000020246	Hcfc2	1700129L13Rik|AU019838|fkls	host cell factor C2	protein-coding	10.5	54.5	28.5	21.5	34.0	15.5
Merged-chr16-70314214-7	chr16	70313745	70314745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028803, exon 1 of 16)	exon (NM_028803, exon 1 of 16)	296.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	20.5	74.5	33.0	19.0	24.0	27.5
Merged-chr7-45568302-4	chr7	45567794	45568794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025330)	TTS (NM_025330)	-1859.0	NM_009737	12036.0	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat(m)|Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	0.0	4.5	20.5	0.0	1.5	3.0
Merged-chr10-93488636-4	chr10	93488139	93489139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010401)	promoter-TSS (NM_010401)	-129.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	14.0	39.0	32.5	43.5	173.5	106.0
Merged-chr11-69922465-2	chr11	69921965	69922965	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166593)	promoter-TSS (NM_001166593)	-507.0	NM_001166593	276770.0	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66918808-4	chr9	66918298	66919298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	907.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55623580-4	chr4	55623079	55624079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91104.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	87.5	209.0	126.5	56.5	183.0	140.5
Merged-chr15-53556625-2	chr15	53556138	53557138	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	57641.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85257445-4	chr12	85256965	85257965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175337, intron 5 of 11)	intron (NM_175337, intron 5 of 11)	-11480.0	NR_105903	102466769.0		NR_105903	ENSMUSG00000098263	Mir6938	Gm27519|mmu-mir-6938	microRNA 6938	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132813811-4	chr7	132813277	132814277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_212473)	promoter-TSS (NM_212473)	-581.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68689558-2	chr11	68689058	68690058	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2357.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-91070730-4	chr8	91070215	91071215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011250, intron 1 of 21)	intron (NM_011250, intron 1 of 21)	658.0	NM_001282000	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	277.5	533.5	477.0	246.5	446.0	402.0
Merged-chr10-85185330-4	chr10	85184740	85185740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007771)	promoter-TSS (NM_007771)	-186.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13645127-4	chr8	13644618	13645618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	L1MB8|LINE|L1	32469.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	20.5	21.5	49.0	23.5	45.0	45.5
Merged-chr2-22811639-4	chr2	22811126	22812126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	37299.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124024987-1	chr5	124024487	124025487	+	1000.0	f0_balb.idr	intron (NM_177876, intron 1 of 3)	L2b|LINE|L2	7273.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	13.0	31.0	11.0	8.5	54.0	32.5
Merged-chr7-126135113-4	chr7	126134593	126135593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 9 of 23)	intron (NM_028816, intron 9 of 23)	-52682.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87755537-4	chr11	87755056	87756056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1308.0	NR_029555	387160.0		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	89.5	335.0	220.5	109.5	234.0	161.5
Merged-chr16-20672713-4	chr16	20672228	20673228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304432)	promoter-TSS (NM_001304432)	1.0	NM_001304432	208643.0	Mm.260256	NM_145941	ENSMUSG00000045983	Eif4g1	E030015G23Rik|eIF-4-gamma 1|eIF-4G 1|eIF-4G1|eIF4GI	eukaryotic translation initiation factor 4, gamma 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-148405867-3	chr6	148405365	148406365	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198967, intron 5 of 19)	intron (NM_198967, intron 5 of 19)	38487.0	NM_198967	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	30.0	22.0	18.0	10.0	24.0	15.0
Merged-chr14-55088532-2	chr14	55088032	55089032	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039198, intron 1 of 9)	intron (NM_001039198, intron 1 of 9)	3516.0	NM_001039198	239102.0	Mm.441113	NM_001039198	ENSMUSG00000040721	Zfhx2	ZFH-5	zinc finger homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6579414-4	chr15	6578886	6579886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001278269)	promoter-TSS (NM_001278269)	-461.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85554962-3	chr8	85554464	85555464	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019794, intron 1 of 8)	CpG	307.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	14.5	51.0	40.0	15.5	51.0	35.0
Merged-chr1-172514126-4	chr1	172513616	172514616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7014.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	63.0	190.5	183.0	10.5	47.5	39.5
Merged-chr9-44604548-4	chr9	44604036	44605036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181324)	promoter-TSS (NM_181324)	-356.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-174053225-4	chr1	174052742	174053742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2867.0	NM_146716	258711.0	Mm.377648	NM_146716	ENSMUSG00000047048	Olfr432	MOR123-2	olfactory receptor 432	protein-coding	25.0	58.0	18.0	6.5	43.0	22.5
Merged-chr1-119492420-4	chr1	119491930	119492930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022327, intron 1 of 4)	RLTR26B_MM|LTR|ERVK	12352.0	NM_022327	64143.0	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23769825-4	chr11	23769326	23770326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009044, intron 1 of 9)	intron (NM_009044, intron 1 of 9)	1144.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-68259729-4	chr15	68259251	68260251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145888)	promoter-TSS (NM_001145888)	-895.0	NM_198644	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	16.5	69.0	46.0	25.5	70.5	64.0
Merged-chr10-82958508-4	chr10	82958031	82959031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-26966.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	16.5	33.5	22.0	20.5	37.5	41.0
Merged-chr15-103486827-4	chr15	103486325	103487325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153505, exon 25 of 31)	exon (NM_153505, exon 25 of 31)	-16209.0	NM_008800	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-34886710-4	chr4	34886194	34887194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3746.0	NM_013889	30046.0	Mm.38193	NM_013889	ENSMUSG00000039967	Zfp292	5730450D02Rik|5830493J20Rik|9430062L07Rik|AI449016|Krox-10|Zfp-15|Zfp15|Zn-15|Zn-16|mKIAA0530	zinc finger protein 292	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117987288-4	chr11	117986777	117987777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151726, intron 1 of 9)	CpG	420.0	NR_151726	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40626618-2	chr19	40626118	40627118	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	14252.0	NM_001304721	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-42349120-4	chr6	42348624	42349624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011777)	promoter-TSS (NM_011777)	-704.0	NM_001289619	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95891979-4	chr3	95891489	95892489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346514)	promoter-TSS (NM_001346514)	16.0	NM_153513	229600.0	Mm.89556	NM_153513	ENSMUSG00000038543	BC028528	L259	cDNA sequence BC028528	protein-coding	35.5	28.5	32.5	20.0	42.5	53.5
Merged-chr18-62180081-4	chr18	62179614	62180614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007420)	promoter-TSS (NM_007420)	14.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	152.5	349.5	179.5	137.0	319.5	216.5
Merged-chr5-99388010-2	chr5	99387510	99388510	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-135083.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115706886-3	chr8	115706391	115707391	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025577)	promoter-TSS (NM_001025577)	3.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136217380-5	chr5	136216822	136217822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001302938)	TTS (NM_001302938)	-18368.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86584797-2	chr11	86584297	86585297	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029738)	promoter-TSS (NR_029738)	-639.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119088450-2	chr11	119087950	119088950	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2213.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-85374808-4	chr6	85374320	85375320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177466)	promoter-TSS (NM_177466)	-186.0	NM_001003955	52055.0	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50760137-4	chr16	50759626	50760626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23283.0	NR_131006	78639.0	Mm.160109	NR_131005	ENSMUSG00000092276	1700116B05Rik	-	RIKEN cDNA 1700116B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-51691190-5	chr12	51690735	51691735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021710, exon 1 of 6)	5' UTR (NM_021710, exon 1 of 6)	269.0	NM_001329698	11782.0	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36052818-4	chr1	36052318	36053318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-15582.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96098777-4	chr3	96098260	96099260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5767.0	NM_001025613	229603.0	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	0.5	3.0	2.5	0.0	1.5	2.0
Merged-chr11-70481744-2	chr11	70481244	70482244	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21760.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80340285-4	chr7	80339785	80340785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133952)	promoter-TSS (NM_133952)	-66.0	NM_133952	101869.0	Mm.243024	NM_133952	ENSMUSG00000030533	Unc45a	AW538196	unc-45 myosin chaperone A	protein-coding	0.0	19.0	29.5	17.5	33.0	16.5
Merged-chr7-141269068-4	chr7	141268598	141269598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028069)	TTS (NM_028069)	-2674.0	NM_001252600	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53769937-4	chr11	53769434	53770434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159396)	promoter-TSS (NM_001159396)	-80.0	NM_001159393	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100833480-4	chr13	100832988	100833988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022885)	promoter-TSS (NM_022885)	-61.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-72788957-3	chr2	72788455	72789455	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102348, intron 2 of 5)	intron (NR_102348, intron 2 of 5)	24762.0	NR_102348	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4208924-4	chr12	4208409	4209409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 16 of 21)	intron (NM_001159537, intron 16 of 21)	25056.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82953979-4	chr18	82953490	82954490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177464, intron 1 of 5)	intron (NM_001177464, intron 1 of 5)	-33430.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94296123-4	chr13	94295619	94296619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10288.0	NM_001346609	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58476546-4	chr16	58476068	58477068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 6 of 10)	intron (NM_001357433, intron 6 of 10)	46858.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78791682-4	chr11	78791180	78792180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34915.0	NM_001076681	66274.0	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-24665081-4	chr6	24664586	24665586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167745)	promoter-TSS (NM_001167745)	-91.0	NM_028459	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97933425-4	chr3	97932904	97933904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033779, intron 1 of 1)	intron (NM_001033779, intron 1 of 1)	3231.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-75192683-4	chr1	75192174	75193174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001288612)	promoter-TSS (NM_001288612)	514.0	NR_051998	52231.0	Mm.259326	NM_026187	ENSMUSG00000026199	Ankzf1	1300008P06Rik|2810025E10Rik|D1Ertd161e	ankyrin repeat and zinc finger domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-93498995-4	chr13	93498471	93499471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021310, exon 1 of 11)	exon (NM_021310, exon 1 of 11)	837.0	NM_021310	57748.0	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding	31.0	49.0	45.5	6.5	32.5	16.0
Merged-chr10-127604747-4	chr10	127604239	127605239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	16409.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	87.5	138.5	91.0	30.5	107.5	49.0
Merged-chr4-132794938-4	chr4	132794450	132795450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033308, intron 1 of 5)	intron (NM_001033308, intron 1 of 5)	1414.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127490183-3	chr3	127489676	127490676	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	URR1B|DNA|hAT-Charlie	8939.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	82.0	93.5	135.5	6.0	4.5	7.5
Merged-chr4-139156664-4	chr4	139156188	139157188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23967.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	32.0	61.0	40.0	29.0	150.5	56.0
Merged-chr19-6141091-4	chr19	6140587	6141587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019722)	promoter-TSS (NM_019722)	50.0	NM_019722	56327.0	Mm.21071	NM_019722	ENSMUSG00000024944	Arl2	2610009M23Rik|AI115441|AW553335	ADP-ribosylation factor-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80117372-4	chr15	80116862	80117862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_207708, exon 4 of 4)	3' UTR (NM_207708, exon 4 of 4)	-15792.0	NM_025609	66513.0	Mm.288245	NM_025609	ENSMUSG00000022414	Tab1	2310012M03Rik|Map3k7ip1|b2b449Clo	TGF-beta activated kinase 1/MAP3K7 binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-73192566-2	chr11	73192066	73193066	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357891, intron 4 of 11)	intron (NM_001357891, intron 4 of 11)	6453.0	NM_031251	83429.0	Mm.259852	NM_031251	ENSMUSG00000005949	Ctns	AI195360|AW049661	cystinosis, nephropathic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40731171-2	chr19	40730671	40731671	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 7 of 9)	Tigger2b|DNA|TcMar-Tigger	71401.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	1.0	1.5	0.0	0.5	0.0	0.0
Merged-chr8-115614338-4	chr8	115613844	115614844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92550.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135545475-4	chr5	135544956	135545956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146001)	promoter-TSS (NM_146001)	-334.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	15.0	16.5	2.0	6.0	11.5	12.0
Merged-chr2-6256984-4	chr2	6256481	6257481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 3 of 6)	intron (NR_040333, intron 3 of 6)	-43987.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-10440094-4	chr3	10439583	10440583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029068)	promoter-TSS (NM_029068)	47.0	NM_029068	74718.0	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35555958-4	chr7	35555443	35556443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033080)	promoter-TSS (NM_033080)	-15.0	NM_033080	110959.0	Mm.410206	NM_033080	ENSMUSG00000034875	Nudt19	D7Rp2|D7Rp2-r|D7Rp2-s|D7Rp2e|RP2-r|RP2-s	nudix (nucleoside diphosphate linked moiety X)-type motif 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21890642-4	chr14	21890141	21891141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-41731.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	3.5	0.5	8.0	3.0	6.5	7.5
Merged-chr9-90235019-4	chr9	90234507	90235507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	35762.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53862487-1	chr18	53861987	53862987	+	1000.0	f0_balb.idr	5' UTR (NM_152809, exon 1 of 13)	5' UTR (NM_152809, exon 1 of 13)	374.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	35.5	115.5	84.0	28.0	97.0	71.0
Merged-chr19-3911892-4	chr19	3911385	3912385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271443, intron 1 of 6)	intron (NM_001271443, intron 1 of 6)	889.0	NM_144870	225887.0	Mm.44227	NM_144870	ENSMUSG00000059734	Ndufs8	BC021616|CI-23kD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74570816-4	chr17	74570312	74571312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007566, intron 7 of 72)	intron (NM_007566, intron 7 of 72)	42517.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-23134249-4	chr19	23133747	23134747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6979.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108792866-4	chr12	108792369	108793369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009537)	promoter-TSS (NM_009537)	-442.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119826596-4	chr8	119826102	119827102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	13977.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32583601-4	chr2	32583117	32584117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_198191, exon 10 of 10)	3' UTR (NM_198191, exon 10 of 10)	-3461.0	NM_001276425	20448.0	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45018533-2	chr7	45018033	45019033	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360132)	promoter-TSS (NM_001360132)	591.0	NM_009101	20130.0	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103483537-4	chr2	103483043	103484043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009804, intron 1 of 12)	intron (NM_009804, intron 1 of 12)	1610.0	NM_009804	12359.0	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	52.0	33.5	25.0	37.5	38.0	37.5
Merged-chr18-53158816-4	chr18	53158320	53159320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17472.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-3610134-4	chr13	3609645	3610645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360838, intron 1 of 19)	intron (NM_001360838, intron 1 of 19)	963.0	NM_134063	105203.0	Mm.221609	NM_134063	ENSMUSG00000033799	Fam208b	AI645998|Pap20|mKIAA2006	family with sequence similarity 208, member B	protein-coding	26.0	99.0	61.0	14.0	129.0	35.5
Merged-chr3-147071158-4	chr3	147070654	147071654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	218787.0	NM_001302957	70892.0	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	0.0	0.0	1.5	0.5	0.0	1.0
Merged-chr2-163418718-2	chr2	163418218	163419218	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025699, intron 1 of 3)	intron (NM_025699, intron 1 of 3)	752.0	NM_025699	66680.0	Mm.25119	NM_025699	ENSMUSG00000035399	Oser1	3230401D17Rik|AI256769|Perit1	oxidative stress responsive serine rich 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119575194-4	chr8	119574702	119575702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026648)	promoter-TSS (NM_026648)	-2.0	NM_175185	72552.0	Mm.36756	NM_175185	ENSMUSG00000034189	Hsdl1	2700067E09Rik	hydroxysteroid dehydrogenase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144570342-4	chr3	144569838	144570838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053102)	promoter-TSS (NM_053102)	-89.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55211524-4	chr13	55211041	55212041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008739, intron 1 of 22)	CpG	1759.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91849262-4	chr12	91848741	91849741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011344)	promoter-TSS (NM_011344)	-84.0	NM_011344	20338.0	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62550014-4	chr11	62549525	62550525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1146.0	NM_011664	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5663180-2	chr19	5662680	5663680	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164481, intron 1 of 17)	intron (NM_001164481, intron 1 of 17)	527.0	NM_001164482	20469.0	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	21.5	50.0	58.0	30.0	60.5	39.0
Merged-chr19-7483281-4	chr19	7482790	7483790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271487)	promoter-TSS (NM_001271487)	1.0	NM_001271486	20168.0	Mm.246990	NM_053076	ENSMUSG00000024758	Rtn3	RTN3-A1	reticulon 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11394844-4	chr2	11394349	11395349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040615, intron 1 of 2)	intron (NR_040615, intron 1 of 2)	3651.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117116488-2	chr11	117115988	117116988	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 1 of 16)	intron (NM_001166507, intron 1 of 16)	1316.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92439648-2	chr5	92439148	92440148	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-4449.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54908845-4	chr14	54908349	54909349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001360406, exon 5 of 10)	exon (NM_001360406, exon 5 of 10)	4283.0	NM_001360406	59049.0	Mm.27435	NM_021551	ENSMUSG00000022199	Slc22a17	1700094C23Rik|24p3R|AU041908|AW555662|BOIT|Boct	solute carrier family 22 (organic cation transporter), member 17	protein-coding	44.5	92.0	73.5	50.0	76.0	45.0
Merged-chr18-69344386-4	chr18	69343889	69344889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013685)	promoter-TSS (NM_013685)	-103.0	NM_013685	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	40.5	83.0	67.5	53.5	95.5	78.5
Merged-chr7-80077181-2	chr7	80076681	80077681	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	-1924.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	9.0	17.5	4.5	11.0	12.5	11.5
Merged-chr11-70000551-4	chr11	70000031	70001031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007888)	promoter-TSS (NM_007888)	-95.0	NM_007888	13543.0	Mm.5114	NM_007888	ENSMUSG00000020888	Dvl2	-	dishevelled segment polarity protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112867500-4	chr12	112866993	112867993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6577.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60832148-3	chr10	60831636	60832636	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359273)	promoter-TSS (NM_001359273)	-555.0	NM_001359273	107449.0	Mm.290433	NM_029770	ENSMUSG00000020099	Unc5b	6330415E02Rik|A630020F16|D10Bwg0792e|Unc5h2	unc-5 netrin receptor B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96594109-4	chr15	96593610	96594610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166456, intron 4 of 15)	intron (NM_001166456, intron 4 of 15)	47852.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81348453-4	chr7	81347942	81348942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357107, intron 9 of 9)	intron (NM_001357107, intron 9 of 9)	-3208.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120106717-2	chr8	120106217	120107217	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5245.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76763087-4	chr16	76762575	76763575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155453, intron 1 of 3)	intron (NR_155453, intron 1 of 3)	16017.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84015521-2	chr18	84015021	84016021	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081300, exon 2 of 2)	exon (NM_001081300, exon 2 of 2)	71041.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-72379687-4	chr4	72379197	72380197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	178453.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110409970-2	chr11	110409470	110410470	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	10868.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-92903816-4	chr7	92903328	92904328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028243, intron 2 of 8)	intron (NM_028243, intron 2 of 8)	28575.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90051889-4	chr3	90051391	90052391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027500)	promoter-TSS (NM_027500)	255.0	NM_001287087	99650.0	Mm.300083	NM_025762	ENSMUSG00000027942	4933434E20Rik	5730552F22Rik|AI462154|NICE-3|NS5ATP4	RIKEN cDNA 4933434E20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9939031-4	chr19	9938497	9939497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39464.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	7.0	40.0	23.0	12.0	36.5	20.0
Merged-chr7-29008383-3	chr7	29007900	29008900	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009109, exon 101 of 106)	exon (NM_009109, exon 101 of 106)	25546.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	0.0	28.0	9.5	76.5	214.5	160.0
Merged-chr15-36608034-4	chr15	36607549	36608549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008774, intron 1 of 14)	intron (NM_008774, intron 1 of 14)	924.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76527741-4	chr12	76527239	76528239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5473.0	NR_039597	100628604.0		NR_039597	ENSMUSG00000092738	Mir5135	mir-5135|mmu-mir-5135|mu-mir-5135	microRNA 5135	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90576434-4	chr2	90575910	90576910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	4237.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135987254-4	chr4	135986758	135987758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025411)	promoter-TSS (NM_025411)	-14.0	NM_025411	66193.0	Mm.29131	NM_025411	ENSMUSG00000028669	Pithd1	1110049F12Rik|AA408179|Trp26	PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92861818-4	chr16	92861312	92862312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-35738.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26676446-4	chr17	26676007	26677007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025272, exon 1 of 4)	exon (NM_025272, exon 1 of 4)	111.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32194494-4	chr5	32193989	32194989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER121|DNA|TcMar?	-38219.0	NM_030072	665270.0	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	2.0	12.0	11.0	1.0	12.0	7.5
Merged-chr2-166709426-2	chr2	166708926	166709926	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	4406.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-101733008-4	chr2	101732503	101733503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 7 of 8)	MTEb|LTR|ERVL-MaLR	54583.0	NM_001303273	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	26.0	32.5	31.0	11.5	42.0	23.5
Merged-chr1-82796294-4	chr1	82795786	82796786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27830.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47511272-4	chr17	47510763	47511763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	6212.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	11.5	72.5	35.5	1.0	28.0	15.0
Merged-chr10-45277198-4	chr10	45276686	45277686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12119.0	NM_024286	78977.0	Mm.24748	NM_024286	ENSMUSG00000019848	Popdc3	AA682104|Pop3	popeye domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94474430-4	chr11	94473929	94474929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001112813)	promoter-TSS (NM_001112813)	-231.0	NM_001112813	12291.0	Mm.29585	NM_009783	ENSMUSG00000020866	Cacna1g	Cav3.1d|[a]1G|a1G|alpha-1G|mKIAA1123	calcium channel, voltage-dependent, T type, alpha 1G subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24777271-4	chr16	24776748	24777748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 8 of 12)	intron (NM_178665, intron 8 of 12)	55393.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75859633-3	chr10	75859127	75860127	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010798, intron 2 of 2)	intron (NM_010798, intron 2 of 2)	623.0	NM_010798	17319.0	Mm.2326	NM_010798	ENSMUSG00000033307	Mif	GIF|Glif	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-13038146-4	chr7	13037626	13038626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243968)	promoter-TSS (NM_001243968)	-148.0	NM_145578	22192.0	Mm.196580	NM_145578	ENSMUSG00000005575	Ube2m	2510040H03Rik|UBC12|Ubc-rs2	ubiquitin-conjugating enzyme E2M	protein-coding	74.0	223.0	125.0	75.0	191.5	152.0
Merged-chr17-33890788-4	chr17	33890301	33891301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195298)	promoter-TSS (NM_001195298)	-168.0	NM_001195298	100502766.0	Mm.335713	NM_001195298	ENSMUSG00000079553	Kifc1	100042970|Gm4137|HSET|KNSL2|Kifc5a|Knsl2a|Tctex-7|Tctex-7A|Tctex7|Tctex7a	kinesin family member C1	protein-coding	14.5	17.0	7.0	24.0	17.0	9.5
Merged-chr6-67036596-4	chr6	67036090	67037090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040278)	promoter-TSS (NR_040278)	-9.0	NR_040278	320172.0	Mm.449039	NR_040278	ENSMUSG00000087231	E230016M11Rik	-	RIKEN cDNA E230016M11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121722139-2	chr3	121721639	121722639	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1398.0	NM_010171	14066.0	Mm.273188	NM_010171	ENSMUSG00000028128	F3	AA409063|CD142|Cf-3|Cf3|TF	coagulation factor III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-127615616-4	chr5	127615123	127616123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133895, intron 1 of 7)	intron (NM_133895, intron 1 of 7)	1769.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12442734-4	chr19	12442237	12443237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	14832.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	183.0	486.5	395.5	159.5	400.5	366.0
Merged-chr5-65990256-4	chr5	65989749	65990749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027961, intron 5 of 6)	intron (NR_027961, intron 5 of 6)	14036.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	8.0	36.0	26.5	19.0	19.0	15.0
Merged-chr4-133130480-4	chr4	133129997	133130997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153423)	promoter-TSS (NM_153423)	-136.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	79.0	161.0	141.0	92.0	200.0	116.5
Merged-chr17-26715542-4	chr17	26715026	26716026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029870)	promoter-TSS (NM_029870)	-124.0	NM_029870	77128.0	Mm.275414	NM_029870	ENSMUSG00000048249	Crebrf	A930001N09Rik|LRF	CREB3 regulatory factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126822184-4	chr7	126821660	126822660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026884, intron 4 of 7)	intron (NM_026884, intron 4 of 7)	-1143.0	NM_029978	68952.0	Mm.440393	NM_026884	ENSMUSG00000058966	Fam57b	1500016O10Rik|A330104J06Rik|AI413816|AW060769	family with sequence similarity 57, member B	protein-coding	4.5	32.5	34.0	27.5	51.0	28.5
Merged-chr15-95906514-4	chr15	95906017	95907017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 3 of 19)	intron (NM_175344, intron 3 of 19)	-76445.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83149759-4	chr15	83149278	83150278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178627)	promoter-TSS (NM_178627)	133.0	NR_004432	104307.0	Mm.471434	NR_004432	ENSMUSG00000065176	Rnu12	-	RNA U12, small nuclear	snRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-75479485-4	chr1	75478958	75479958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177056)	promoter-TSS (NM_177056)	13.0	NM_001001566	74241.0	Mm.260577	NM_001001565	ENSMUSG00000032997	Chpf	1700028N03Rik|AI414328|D1Bwg1363e	chondroitin polymerizing factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102481578-4	chr5	102481089	102482089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_029270, exon 1 of 10)	5' UTR (NM_029270, exon 1 of 10)	198.0	NM_029270	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59784439-4	chr15	59783947	59784947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10512.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62401361-5	chr15	62400804	62401804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-181853.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-35222112-4	chr4	35221612	35222612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081343, intron 1 of 10)	Tigger7|DNA|TcMar-Tigger	3768.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103033615-4	chr14	103033116	103034116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 1 of 2)	intron (NR_045657, intron 1 of 2)	187.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-19869710-4	chr4	19869236	19870236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	51009.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71484538-1	chr17	71484038	71485038	+	1000.0	f1_balb.idr	Intergenic	B1_Mus2|SINE|Alu	-9195.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	17.5	73.5	49.0	2.0	23.5	15.5
Merged-chr2-127270173-4	chr2	127269664	127270664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139308)	promoter-TSS (NM_139308)	-65.0	NM_139308	99138.0	Mm.41271	NM_139308	ENSMUSG00000027367	Stard7	AI852671|AL022671|AW544915	START domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-109281134-3	chr2	109280638	109281638	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139303, intron 1 of 16)	intron (NM_139303, intron 1 of 16)	400.0	NM_139303	228421.0	Mm.274086	NM_139303	ENSMUSG00000027115	Kif18a	AU024633|B130001M12Rik|gcd2	kinesin family member 18A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3349576-4	chr12	3349058	3350058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15574.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182910597-2	chr1	182910097	182911097	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-44191.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4334004-4	chr19	4333489	4334489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001984, intron 12 of 20)	intron (NM_001001984, intron 12 of 20)	-27767.0	NM_001290818	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	81.5	137.5	92.5	64.5	147.5	116.0
Merged-chr14-70101537-4	chr14	70101035	70102035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021328, intron 1 of 8)	intron (NM_021328, intron 1 of 8)	1442.0	NM_001360404	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108275604-4	chr12	108275137	108276137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159910)	promoter-TSS (NM_001159910)	-220.0	NM_001159910	668158.0	Mm.482792	NM_001159910	ENSMUSG00000084883	Ccdc85c	EG668158|Gm265|Gm9010|hhy	coiled-coil domain containing 85C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43466139-4	chr1	43465640	43466640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	20389.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80294874-4	chr18	80294378	80295378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001190373, exon 4 of 4)	3' UTR (NM_001190373, exon 4 of 4)	38572.0	NM_025861	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99241799-2	chr5	99241299	99242299	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 2 of 13)	intron (NM_181318, intron 2 of 13)	11128.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125359682-3	chr8	125359173	125360173	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	133160.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	6.0	1.5	1.5	0.5	0.0	4.5
Merged-chr9-75426105-2	chr9	75425605	75426605	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	-15419.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	0.0	0.0	0.5	1.0	0.0	0.5
Merged-chr9-114861644-4	chr9	114861163	114862163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H1|LTR|ERVL-MaLR	-17511.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	11.0	2.0	1.5	2.5	10.5	3.0
Merged-chr15-79414786-4	chr15	79414289	79415289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11486.0	NM_172608	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	44.5	130.5	73.0	43.0	128.5	89.0
Merged-chr3-79237830-4	chr3	79237347	79238347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045502, intron 1 of 2)	ORR1A4|LTR|ERVL-MaLR	24928.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-14835519-4	chr9	14835009	14836009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001310728, exon 19 of 19)	3' UTR (NM_001310728, exon 19 of 19)	-24701.0	NM_001310734	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-106911421-4	chr4	106910926	106911926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023672)	promoter-TSS (NM_023672)	-44.0	NM_198438	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	15.0	19.0	8.5	11.5	23.5	10.5
Merged-chr10-105575469-4	chr10	105574976	105575976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177368)	promoter-TSS (NM_177368)	925.0	NR_038032	327812.0	Mm.191660	NR_038032	ENSMUSG00000085282	Gm15663	9330159K06	predicted gene 15663	ncRNA	2.0	2.0	0.0	0.0	0.0	0.0
Merged-chr10-80744073-2	chr10	80743573	80744573	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1798.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98901439-4	chr12	98900941	98901941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081191)	promoter-TSS (NM_001081191)	43.0	NM_001081191	319670.0	Mm.390484	NM_001081191	ENSMUSG00000051166	Eml5	BC027154|C130068M19Rik	echinoderm microtubule associated protein like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71629437-4	chr8	71628932	71629932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001029873, exon 42 of 42)	exon (NM_001029873, exon 42 of 42)	1674.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	117.5	213.5	172.0	146.5	261.5	155.5
Merged-chr1-74601403-4	chr1	74600922	74601922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305230)	promoter-TSS (NM_001305230)	-25.0	NM_001305230	57751.0	Mm.280920	NM_021313	ENSMUSG00000026171	Rnf25	0610009H16Rik|AO7	ring finger protein 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43767905-4	chr13	43767382	43768382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17230.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71190260-2	chr17	71189760	71190760	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	6282.0	NM_022882	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	44.0	71.0	47.5	31.5	63.5	33.5
Merged-chr15-31510623-4	chr15	31510127	31511127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172606, intron 1 of 25)	intron (NM_172606, intron 1 of 25)	20410.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-106788158-4	chr3	106787647	106788647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007651, intron 1 of 7)	intron (NM_007651, intron 1 of 7)	2002.0	NM_007651	12508.0	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103017151-4	chr11	103016661	103017661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026551)	promoter-TSS (NM_026551)	-14.0	NM_026551	68087.0	Mm.277449	NM_026551	ENSMUSG00000020935	Dcakd	3010024O21Rik|6720485C15Rik|AI849483	dephospho-CoA kinase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-7114065-4	chr15	7113516	7114516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15556.0	NM_001113386	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120746804-2	chr4	120746304	120747304	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081142, intron 1 of 13)	CpG	372.0	NM_001081142	60613.0	Mm.249977	NM_001081142	ENSMUSG00000028631	Kcnq4	-	potassium voltage-gated channel, subfamily Q, member 4	protein-coding	0.0	0.0	0.0	1.0	0.0	1.5
Merged-chr8-56439628-4	chr8	56439138	56440138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45330.0	NR_131020	75123.0	Mm.72666	NR_131020	ENSMUSG00000110310	4930518J21Rik	-	RIKEN cDNA 4930518J21 gene	ncRNA	7.5	3.0	12.0	11.5	20.5	3.0
Merged-chr1-52307216-3	chr1	52306699	52307699	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73967.0	NM_001113383	14660.0	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	15.5	6.0	10.5	32.0	40.5	44.5
Merged-chr7-3693213-4	chr7	3692707	3693707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164205)	promoter-TSS (NM_001164205)	318.0	NM_029934	77582.0	Mm.397541	NM_029934	ENSMUSG00000035596	Mboat7	5730589L02Rik|BB1|Leng4|Lpiat|Lpiat1|mBB1	membrane bound O-acyltransferase domain containing 7	protein-coding	12.0	59.5	46.0	50.5	97.5	55.0
Merged-chr7-126799265-4	chr7	126798769	126799769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007438)	promoter-TSS (NM_007438)	-15.0	NM_007438	11674.0	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136894897-4	chr4	136894425	136895425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007572)	TTS (NM_007572)	-2011.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	28.0	68.5	34.5	81.0	110.5	91.0
Merged-chr14-31129051-4	chr14	31128558	31129558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308464)	promoter-TSS (NM_001308464)	-128.0	NM_001308464	66487.0	Mm.379116	NM_001308091	ENSMUSG00000058351	Smim4	2010107H07Rik|Gm41122	small integral membrane protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4163377-4	chr19	4162900	4163900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021485)	promoter-TSS (NM_021485)	-17.0	NR_153659	58988.0	Mm.271937	NM_021485	ENSMUSG00000024830	Rps6kb2	S6K-beta-2|S6K2	ribosomal protein S6 kinase, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3645470-2	chr2	3644970	3645970	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67988.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58516512-4	chr13	58516009	58517009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H1|LTR|ERVL-MaLR	94368.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64803216-4	chr5	64802746	64803746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008453)	promoter-TSS (NM_008453)	-277.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35292173-4	chr12	35291658	35292658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97261.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	12.0	52.5	52.0	26.5	60.0	61.0
Merged-chr10-40098641-4	chr10	40098150	40099150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	RSINE1|SINE|B4	43604.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8798113-2	chr15	8797613	8798613	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	-87306.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124733179-4	chr6	124732685	124733685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013545)	promoter-TSS (NM_013545)	-31.0	NM_013545	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122980091-4	chr8	122979586	122980586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	62198.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	7.0	4.5	6.0	6.5	5.5	7.5
Merged-chr16-87653129-4	chr16	87652631	87653631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45823.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	23.0	67.0	79.5	17.0	32.5	36.0
Merged-chr3-88493090-4	chr3	88492601	88493601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002011, intron 1 of 11)	intron (NM_001002011, intron 1 of 11)	211.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	21.0	39.5	25.5	32.0	60.0	12.0
Merged-chr10-67096341-4	chr10	67095838	67096838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 1 of 7)	CpG	650.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25378262-4	chr12	25377778	25378778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	249104.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	2.5	0.0	3.0	0.0	0.0	1.0
Merged-chr1-164405604-4	chr1	164405106	164406106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138314, intron 13 of 13)	intron (NM_138314, intron 13 of 13)	52749.0	NM_009721	11931.0	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69429544-4	chr11	69429049	69430049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 76 of 85)	intron (NM_001081330, intron 76 of 85)	-15874.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154402977-2	chr2	154402477	154403477	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009228, intron 2 of 7)	intron (NM_009228, intron 2 of 7)	5107.0	NM_009228	20648.0	Mm.1541	NM_009228	ENSMUSG00000027488	Snta1	AW228934|Snt1	syntrophin, acidic 1	protein-coding	2.5	6.5	11.5	0.5	13.0	2.5
Merged-chr15-27682815-4	chr15	27682290	27683290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1248.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10390896-4	chr17	10390392	10391392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65324.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108758091-4	chr12	108757599	108758599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-35212.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106933883-4	chr1	106933381	106934381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027971)	promoter-TSS (NM_027971)	-568.0	NM_027971	71869.0	Mm.321740	NM_027971	ENSMUSG00000059956	Serpinb12	2300003F07Rik|4833409F13Rik	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173659702-4	chr2	173659204	173660204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027957)	promoter-TSS (NR_027957)	-141.0	NM_024436	19334.0	Mm.275304	NM_024436	ENSMUSG00000027519	Rab22a	3732413A17Rik|AI662177|AW319644|AW550514|E130120E14Rik|Rab22	RAB22A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101155743-4	chr4	101155256	101156256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 22 of 24)	intron (NM_146145, intron 22 of 24)	86718.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171619213-4	chr1	171618717	171619717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-11807.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	67.0	120.5	109.0	96.5	138.5	102.5
Merged-chr2-155819257-4	chr2	155818769	155819769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015528)	promoter-TSS (NR_015528)	-66.0	NR_015528	613262.0	Mm.330707	NR_015528	ENSMUSG00000074649	BC029722	-	cDNA sequence BC029722	ncRNA	126.5	331.0	234.0	83.5	230.0	154.5
Merged-chr13-5804403-3	chr13	5803912	5804912	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53680.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68441156-4	chr11	68440650	68441650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	9025.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-113708106-5	chr9	113707552	113708552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001164677, exon 1 of 18)	exon (NM_001164677, exon 1 of 18)	207.0	NM_001164678	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166608998-2	chr2	166608498	166609498	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 10 of 39)	intron (NM_177782, intron 10 of 39)	44476.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91597026-2	chr16	91596526	91597526	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030018, intron 1 of 6)	intron (NM_030018, intron 1 of 6)	654.0	NM_030018	77975.0	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132488777-4	chr4	132488262	132489262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21694.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	10.5	17.0	14.5	4.5	30.0	7.5
Merged-chr4-108380415-4	chr4	108379917	108380917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099303, intron 1 of 2)	intron (NM_001099303, intron 1 of 2)	3238.0	NM_001099303	545667.0	Mm.380025	NM_001099303	ENSMUSG00000059816	Fam159a	Shisal2a	family with sequence similarity 159, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25689334-4	chr7	25688816	25689816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011577, intron 1 of 6)	CpG	2314.0	NM_011577	21803.0	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142442847-4	chr7	142442365	142443365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009405, intron 1 of 5)	intron (NM_009405, intron 1 of 5)	397.0	NM_009405	21953.0	Mm.39469	NM_009405	ENSMUSG00000031097	Tnni2	-	troponin I, skeletal, fast 2	protein-coding	29.0	27.0	20.0	7.5	23.5	6.0
Merged-chr2-160620228-7	chr2	160619699	160620699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25698.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	36.5	52.0	59.5	13.0	63.5	67.5
Merged-chr10-127421149-4	chr10	127420637	127421637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001168293, exon 1 of 24)	5' UTR (NM_001168293, exon 1 of 24)	270.0	NM_001359243	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-135503802-4	chr2	135503304	135504304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79416.0	NR_015544	320684.0	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-106759004-4	chr7	106758503	106759503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5617.0	NM_146602	258595.0	Mm.377585	NM_146602	ENSMUSG00000059087	Olfr698	MOR283-3	olfactory receptor 698	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135994838-4	chr5	135994333	135995333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023742)	promoter-TSS (NM_023742)	33.0	NM_001256098	74198.0	Mm.275574	NM_023742	ENSMUSG00000004947	Dtx2	2610524D08Rik|AA408415|AU022494|Deltex2	deltex 2, E3 ubiquitin ligase	protein-coding	0.0	0.0	0.0	2.0	2.0	0.0
Merged-chr13-93241272-2	chr13	93240780	93241780	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48863.0	NM_001361537	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	16.5	80.5	72.0	29.0	83.5	55.0
Merged-chr5-139015198-4	chr5	139014713	139015713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20260.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116433388-2	chr11	116432888	116433888	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003376)	promoter-TSS (NR_003376)	-706.0	NM_176902	319370.0	Mm.258466	NM_176902	ENSMUSG00000050628	Ubald2	1110014K08Rik|D030012E24Rik|Fam100b	UBA-like domain containing 2	protein-coding	54.0	119.0	80.5	26.5	73.0	57.0
Merged-chr12-91751507-4	chr12	91751013	91752013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	Lx7|LINE|L1	34923.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56074665-4	chr17	56074167	56075167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024432, intron 2 of 11)	CpG	4666.0	NM_024432	66530.0	Mm.28000	NM_024432	ENSMUSG00000019578	Ubxn6	1200008L11Rik|2210415J11Rik|AU040909|Ubxd1|Ubxdc2	UBX domain protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131691619-4	chr1	131691136	131692136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145509, intron 1 of 5)	intron (NM_145509, intron 1 of 5)	2941.0	NM_145509	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	155.5	340.5	211.5	92.5	185.0	189.0
Merged-chr14-11162094-4	chr14	11161590	11162590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308285)	promoter-TSS (NM_001308285)	-55.0	NM_001308285	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-83079429-4	chr13	83078906	83079906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-381073.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	45.0	38.0	18.5	30.0	50.0	19.5
Merged-chr16-92039701-4	chr16	92039188	92040188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18634.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-93095784-2	chr13	93095284	93096284	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_023821, exon 2 of 13)	exon (NM_023821, exon 2 of 13)	951.0	NR_046182	408254.0	Mm.474857	NR_046182	ENSMUSG00000114968	A630019I02Rik	-	RIKEN cDNA A630019I02 gene	ncRNA	5.5	6.0	1.5	1.5	1.0	6.5
Merged-chr15-85336558-6	chr15	85336091	85337091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016843, intron 1 of 11)	CpG	210.0	NM_016843	54138.0	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding	9.0	29.5	15.5	14.0	12.5	9.5
Merged-chr3-13592757-4	chr3	13592251	13593251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357034, intron 1 of 7)	intron (NM_001357034, intron 1 of 7)	60114.0	NR_040598	75203.0	Mm.490940	NR_040598		4930539N22Rik	-	RIKEN cDNA 4930539N22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16104837-4	chr1	16104337	16105337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011291)	promoter-TSS (NM_011291)	-404.0	NM_011291	19989.0	Mm.319659	NM_011291	ENSMUSG00000043716	Rpl7	Rpl7a|Surf-3	ribosomal protein L7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-34297218-4	chr12	34296733	34297733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 16 of 27)	intron (NM_001271386, intron 16 of 27)	231656.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	18.0	24.0	19.0	3.0	3.0	10.0
Merged-chr11-55454258-2	chr11	55453758	55454758	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 2 of 3)	PB1D10|SINE|Alu	6950.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122754094-4	chr10	122753586	122754586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	74771.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-33800106-4	chr3	33799569	33800569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025978)	promoter-TSS (NM_025978)	-114.0	NM_027619	67120.0	Mm.275710	NM_025978	ENSMUSG00000027677	Ttc14	2700016E08Rik|4930434D01Rik|4931403I22Rik|4933402I15Rik|AI662468|AU014779|AW561908|cI-44|mKIAA1980	tetratricopeptide repeat domain 14	protein-coding	33.0	73.0	53.0	36.0	93.5	63.0
Merged-chr4-58563704-4	chr4	58563205	58564205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-10214.0	NM_010336	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	2.0	9.0	9.0	15.5	17.5	17.5
Merged-chr14-55660363-4	chr14	55659864	55660864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028316, exon 1 of 5)	non-coding (NR_028316, exon 1 of 5)	144.0	NM_023397	67881.0	Mm.24601	NM_023397	ENSMUSG00000002329	Mdp1	1810034K20Rik|AI035604	magnesium-dependent phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25591524-2	chr9	25591024	25592024	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 6 of 7)	intron (NM_026189, intron 6 of 7)	109927.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40708336-4	chr19	40707841	40708841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	48571.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	6.5	18.0	4.5	14.0	13.0	4.5
Merged-chr18-75019205-1	chr18	75018705	75019705	+	1000.0	f1_c57bl6.idr	intron (NM_027727, intron 1 of 16)	CpG	433.0	NM_027727	69190.0	Mm.173826	NM_027727	ENSMUSG00000035765	Dym	1810041M12Rik|4933427L07Rik|C030019K18Rik	dymeclin	protein-coding	28.0	23.5	34.0	13.5	27.5	26.5
Merged-chr6-108570539-4	chr6	108570026	108571026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52641.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	24.0	94.5	52.0	24.0	95.5	55.0
Merged-chr1-16104421-2	chr1	16103918	16104918	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_011291)	promoter-TSS (NM_011291)	15.0	NM_011291	19989.0	Mm.319659	NM_011291	ENSMUSG00000043716	Rpl7	Rpl7a|Surf-3	ribosomal protein L7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84851280-4	chr18	84850775	84851775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025797)	promoter-TSS (NM_025797)	-63.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165642443-4	chr1	165641963	165642963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7922.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59870321-4	chr13	59869803	59870803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-47156.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	7.5	37.0	13.5	6.5	28.5	17.0
Merged-chr7-38019520-4	chr7	38019018	38020018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011274)	promoter-TSS (NM_011274)	34.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	13.5	40.0	44.0	21.5	51.5	29.0
Merged-chr7-27327462-1	chr7	27326962	27327962	+	1000.0	f1_c57bl6.idr	exon (NM_175641, exon 12 of 33)	exon (NM_175641, exon 12 of 33)	6186.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr2-169777416-1	chr2	169776916	169777916	+	1000.0	f0_c57.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	143770.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	5.0	5.0	4.5	1.5	4.5	0.0
Merged-chr8-85011157-2	chr8	85010657	85011657	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_052011, exon 5 of 10)	non-coding (NR_052011, exon 5 of 10)	3251.0	NM_001130194	212989.0	Mm.215154	NM_001130194	ENSMUSG00000052819	Best2	Vmd2l1	bestrophin 2	protein-coding	7.0	2.5	11.5	0.0	0.0	2.5
Merged-chr13-55212236-4	chr13	55211766	55212766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008739, intron 1 of 22)	CpG	2484.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21246075-4	chr16	21245562	21246562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10004.0	NR_106145	102465781.0		NR_106145	ENSMUSG00000098400	Mir7680	Gm27417|mmu-mir-7680	microRNA 7680	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105393403-4	chr8	105392906	105393906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301173, intron 5 of 15)	intron (NM_001301173, intron 5 of 15)	18025.0	NM_001081333	102075.0	Mm.32034	NM_175321	ENSMUSG00000014782	Plekhg4	4931414L13Rik|AI448583|mFLJ00068	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-96921723-4	chr5	96921227	96922227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131152, intron 1 of 2)	intron (NR_131152, intron 1 of 2)	455.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	280.0	567.5	458.0	152.0	355.5	329.5
Merged-chr8-119440106-2	chr8	119439606	119440606	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027950, intron 1 of 5)	intron (NM_027950, intron 1 of 5)	2944.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34063848-4	chr11	34063361	34064361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 3 of 20)	intron (NM_010696, intron 3 of 20)	16933.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	5.5	27.0	22.0	10.5	49.0	16.5
Merged-chr2-116942545-4	chr2	116942031	116943031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42379.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-149957689-4	chr1	149957199	149958199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	3591.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-108071477-4	chr4	108070982	108071982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011327, intron 11 of 15)	intron (NM_011327, intron 11 of 15)	-15875.0	NR_105823	102465213.0		NR_105823	ENSMUSG00000098980	Mir6397	Gm28004|mmu-mir-6397	microRNA 6397	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-23570370-4	chr9	23569860	23570860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A2|LTR|ERVK	347284.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118096347-4	chr10	118095884	118096884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45403.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	156.0	325.0	276.5	141.0	304.0	244.5
Merged-chr8-83748063-4	chr8	83747573	83748573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6762.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	307.5	730.5	518.5	220.5	619.0	491.5
Merged-chr8-40511317-4	chr8	40510828	40511828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033560)	promoter-TSS (NM_033560)	426.0	NM_001271543	18983.0	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	6.5	37.0	36.0	20.5	40.5	25.0
Merged-chr14-47354291-4	chr14	47353785	47354785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19575.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	35.5	109.5	78.5	31.0	90.5	47.5
Merged-chr15-62057634-4	chr15	62057125	62058125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	L1MB4|LINE|L1	18368.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120885400-4	chr4	120884901	120885901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182929, intron 4 of 7)	B4A|SINE|B4	30602.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	2.0	4.5	9.5	2.0	4.0	12.5
Merged-chr10-62887007-2	chr10	62886507	62887507	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253857, intron 1 of 12)	CpG	317.0	NM_001253857	52463.0	Mm.17774	NM_027384	ENSMUSG00000047146	Tet1	2510010B09Rik|AA517754|BB001228|Cxxc6|D10Ertd17e|LCX|mKIAA1676	tet methylcytosine dioxygenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-51729077-4	chr15	51728562	51729562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136399.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77467282-4	chr11	77466785	77467785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_139128, exon 5 of 10)	exon (NM_139128, exon 5 of 10)	3372.0	NM_139130	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-116894786-4	chr2	116894284	116895284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5368.0	NR_040336	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3290418-4	chr7	3289929	3290929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016969)	promoter-TSS (NM_016969)	-126.0	NM_016969	50918.0	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	21.0	60.0	33.0	6.5	15.0	3.0
Merged-chr14-54554431-4	chr14	54553928	54554928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145462)	promoter-TSS (NM_145462)	-67.0	NM_145462	219072.0	Mm.202152	NM_145462	ENSMUSG00000022177	Haus4	9430093H08Rik|AU016300|D14Ertd500e	HAUS augmin-like complex, subunit 4	protein-coding	61.0	103.0	106.0	29.5	76.5	50.0
Merged-chr4-53264004-4	chr4	53263505	53264505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033139, intron 1 of 1)	intron (NR_033139, intron 1 of 1)	1487.0	NR_033140	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124250999-4	chr8	124250500	124251500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139272, intron 1 of 15)	intron (NM_139272, intron 1 of 15)	19606.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	12.0	79.5	21.0	15.5	31.0	16.5
Merged-chr4-59362806-4	chr4	59362286	59363286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 10 of 16)	intron (NM_001163288, intron 10 of 16)	75847.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	83.0	101.0	99.5	64.0	159.5	149.0
Merged-chr9-90067593-4	chr9	90067152	90068152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312649, intron 7 of 10)	intron (NM_001312649, intron 7 of 10)	13385.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	3.5	8.0	4.0	1.5	11.5	7.0
Merged-chr11-70646039-2	chr11	70645539	70646539	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024211, intron 2 of 7)	intron (NM_024211, intron 2 of 7)	1000.0	NM_024211	67863.0	Mm.296082	NM_024211	ENSMUSG00000014606	Slc25a11	2310022P18Rik|2oxoc	solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11	protein-coding	7.5	5.0	5.0	5.0	11.5	3.0
Merged-chr11-23633703-4	chr11	23633195	23634195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347242)	promoter-TSS (NM_001347242)	-64.0	NM_027860	71675.0	Mm.48031	NM_027860	ENSMUSG00000042208	0610010F05Rik	Kiaa1841|mKIAA1841	RIKEN cDNA 0610010F05 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3420684-4	chr12	3420178	3421178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030694, intron 1 of 2)	intron (NR_030694, intron 1 of 2)	6069.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56618516-2	chr17	56618016	56619016	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028782, intron 8 of 17)	intron (NM_028782, intron 8 of 17)	5121.0	NM_018730	54217.0	Mm.11376	NM_018730	ENSMUSG00000057863	Rpl36	-	ribosomal protein L36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-129018911-1	chr5	129018411	129019411	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-1245.0	NM_009391	19384.0	Mm.297440	NM_009391	ENSMUSG00000029430	Ran	-	RAN, member RAS oncogene family	protein-coding	6.5	16.0	10.0	0.0	9.5	13.0
Merged-chr1-34855226-4	chr1	34854748	34855748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357425, intron 2 of 8)	MTD-int|LTR|ERVL-MaLR	5259.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-105181331-4	chr11	105180815	105181815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001294334)	promoter-TSS (NM_001294334)	118.0	NR_027956	73431.0	Mm.351426	NM_028539		1700052K11Rik	AI840954	RIKEN cDNA 1700052K11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26509646-4	chr17	26509156	26510156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1184.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-14276173-4	chr9	14275665	14276665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030261)	promoter-TSS (NM_030261)	-136.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-92183979-4	chr6	92183450	92184450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025578)	promoter-TSS (NM_025578)	73.0	NM_025578	64658.0	Mm.87062	NM_025578	ENSMUSG00000014551	Mrps25	2810429N01Rik|Rpms25	mitochondrial ribosomal protein S25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59728331-4	chr15	59727838	59728838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66621.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	34.5	90.5	61.0	52.0	85.0	64.0
Merged-chr5-43187509-4	chr5	43187004	43188004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 5 of 7)	ORR1F|LTR|ERVL-MaLR	-45959.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	9.5	25.5	22.0	8.5	20.0	16.0
Merged-chr2-59332741-4	chr2	59332238	59333238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 11 of 20)	intron (NM_175464, intron 11 of 20)	53944.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-30961603-3	chr4	30961112	30962112	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	297016.0	NR_040655	75332.0	Mm.108636	NR_040655		4930556G01Rik	-	RIKEN cDNA 4930556G01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-25168866-4	chr18	25168381	25169381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142698)	promoter-TSS (NM_001142698)	-4.0	NM_001004361	66648.0	Mm.263189	NM_001004361	ENSMUSG00000024269	Tpgs2	5730437P09Rik|5730494M16Rik|AI666318|Pgs2	tubulin polyglutamylase complex subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-75405984-2	chr9	75405484	75406484	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015806, intron 1 of 5)	B2_Mm2|SINE|B2	3375.0	NM_027418	50772.0	Mm.480076	NM_015806	ENSMUSG00000042688	Mapk6	2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6	mitogen-activated protein kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-72760493-4	chr12	72759995	72760995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008910)	promoter-TSS (NM_008910)	-716.0	NM_008910	19042.0	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172217318-4	chr1	172216790	172217790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009813, intron 2 of 10)	intron (NM_009813, intron 2 of 10)	2605.0	NM_009813	12372.0	Mm.12829	NM_009813	ENSMUSG00000007122	Casq1	CSQ|CSQ-1|CSQ1|sCSQ	calsequestrin 1	protein-coding	12.0	12.0	12.5	5.0	23.0	2.5
Merged-chr10-121462356-1	chr10	121461856	121462856	+	1000.0	f1_balb.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	13894.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	78.0	138.5	119.0	91.5	140.5	174.5
Merged-chr2-170330006-4	chr2	170329508	170330508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26353.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	18.0	44.5	27.5	14.5	45.5	25.5
Merged-chr3-97768102-4	chr3	97767612	97768612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110360)	promoter-TSS (NR_110360)	-98.0	NR_110360	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79669152-5	chr10	79668676	79669676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148934)	promoter-TSS (NM_148934)	-234.0	NM_148934	110012.0	Mm.22623	NM_148934	ENSMUSG00000020308	Tpgs1	AV005629|Gm16517|Gtrgeo22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180957267-4	chr1	180956764	180957764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144794, intron 8 of 22)	MTD|LTR|ERVL-MaLR	14746.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-37464121-1	chr6	37463621	37464621	+	1000.0	f0_c57.idr	Intergenic	Lx8|LINE|L1	-21973.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137631752-2	chr5	137631252	137632252	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033148, intron 1 of 21)	intron (NR_033148, intron 1 of 21)	2629.0	NR_033148	100316903.0	Mm.200763	NR_033148		Gm20605	Lrch4-sap25	predicted gene 20605	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75193232-4	chr8	75192750	75193750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	-20694.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	0.0	2.5	6.0	3.0	2.5	2.5
Merged-chr12-12302015-4	chr12	12301513	12302513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	39874.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	22.5	101.0	57.0	41.5	67.0	45.0
Merged-chr12-83597236-4	chr12	83596740	83597740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183154)	promoter-TSS (NM_183154)	-18.0	NM_001359166	217695.0	Mm.59257	NM_183154	ENSMUSG00000042628	Zfyve1	DFCP1|G630053K23|TAFF1|ZNFN2A1|mKIAA1589	zinc finger, FYVE domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57645680-4	chr9	57645177	57646177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007783)	promoter-TSS (NM_007783)	-24.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99984258-2	chr5	99983758	99984758	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5320.0	NM_001077267	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36670321-4	chr18	36669818	36670818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164406)	promoter-TSS (NM_001164406)	-7.0	NM_025291	24068.0	Mm.29058	NM_025291	ENSMUSG00000006050	Sra1	AA959952|Sra|Srap|Straa1|Strra1	steroid receptor RNA activator 1	protein-coding	25.0	40.0	25.5	21.5	38.5	30.5
Merged-chr7-80803378-4	chr7	80802852	80803852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016721)	promoter-TSS (NM_016721)	-21.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	8.0	17.5	13.0	19.5	21.0	25.5
Merged-chr6-72119368-2	chr6	72118868	72119868	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045163)	TTS (NR_045163)	3572.0	NR_045163	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-51738796-4	chr15	51738290	51739290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	126671.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	0.0	5.5	1.5	6.0	3.5	6.0
Merged-chr1-120519635-4	chr1	120519133	120520133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14609.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	6.0	19.0	17.0	1.0	13.0	7.5
Merged-chr14-120306414-4	chr14	120305925	120306925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360376)	promoter-TSS (NM_001360376)	-27.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75005754-4	chr18	75005234	75006234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001181)	promoter-TSS (NM_001001181)	-105.0	NM_001358306	407819.0	Mm.29866	NM_001001181	ENSMUSG00000036299	BC031181	-	cDNA sequence BC031181	protein-coding	120.5	324.0	195.5	86.0	365.0	220.0
Merged-chr3-79628887-4	chr3	79628406	79629406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029482)	promoter-TSS (NM_029482)	-139.0	NM_025794	66841.0	Mm.28336	NM_025794	ENSMUSG00000027809	Etfdh	0610010I20Rik|AV001013	electron transferring flavoprotein, dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58885823-2	chr15	58885323	58886323	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3406.0	NM_175226	75841.0	Mm.4537	NM_175226	ENSMUSG00000037075	Rnf139	4930555P18Rik	ring finger protein 139	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-55255869-4	chr9	55255358	55256358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	LTR37-int|LTR|ERV1	27767.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47377145-4	chr14	47376619	47377619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145953, intron 1 of 5)	MIRc|SINE|MIR	3259.0	NM_001145953	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	75.5	122.5	130.0	52.5	128.0	82.0
Merged-chr2-66120190-4	chr2	66119695	66120695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015736, intron 1 of 10)	intron (NM_015736, intron 1 of 10)	4598.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78476972-4	chr10	78476490	78477490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12042.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81107053-1	chr15	81106553	81107553	+	1000.0	f1_balb.idr	intron (NM_001082536, intron 2 of 13)	MT2B1|LTR|ERVL	-2006.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	8.5	13.5	3.0	7.5	0.0	12.5
Merged-chr2-26974159-4	chr2	26973660	26974660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001322, intron 2 of 28)	intron (NM_001001322, intron 2 of 28)	744.0	NM_001290465	279028.0	Mm.330084	NM_001001322	ENSMUSG00000014852	Adamts13	ADAM-TS13|ADAMTS-13|Gm710|vWF-CP	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-118354320-4	chr5	118353822	118354822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109095.0	NM_001081236	76792.0	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180401975-4	chr1	180401472	180402472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-71423.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88855822-2	chr6	88855322	88856322	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347327, intron 2 of 7)	intron (NM_001347327, intron 2 of 7)	12968.0	NR_045880	100038356.0	Mm.442704	NR_045880	ENSMUSG00000085828	Gm15612	-	predicted gene 15612	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167335299-4	chr2	167334807	167335807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	13871.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-122892351-4	chr4	122891820	122892820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6244.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	25.5	78.0	39.0	17.5	58.5	20.5
Merged-chr11-115824040-4	chr11	115823563	115824563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145438)	promoter-TSS (NM_145438)	5.0	NM_001252532	217325.0	Mm.290450	NM_145438	ENSMUSG00000020782	Llgl2	9130006H11Rik|Llglh2	LLGL2 scribble cell polarity complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116595367-1	chr3	116594867	116595867	+	1000.0	f1_balb.idr	promoter-TSS (NR_152258)	promoter-TSS (NR_152258)	409.0	NM_001289571	72776.0	Mm.440836	NM_028349	ENSMUSG00000027959	Sass6	2810453L12Rik	SAS-6 centriolar assembly protein	protein-coding	12.0	82.5	61.5	25.5	71.5	58.5
Merged-chr11-69095113-4	chr11	69094589	69095589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3860.0	NM_011065	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-26748331-4	chr19	26747824	26748824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026003)	promoter-TSS (NM_026003)	-79.0	NM_026003	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	20.5	79.0	46.0	21.5	70.0	40.5
Merged-chr13-67399772-4	chr13	67399268	67400268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080941)	promoter-TSS (NM_001080941)	-1.0	NM_001080941	72807.0	Mm.303790	NM_001080941	ENSMUSG00000078994	Zfp429	2810487A22Rik|AI929863|Rsl2	zinc finger protein 429	protein-coding	93.5	170.5	131.0	63.5	126.5	111.0
Merged-chr5-21722361-2	chr5	21721861	21722861	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-14799.0	NM_028431	73078.0	Mm.301655	NM_028431	ENSMUSG00000029017	Pmpcb	3110004O18Rik|MPP11|MPPB|MPPP52	peptidase (mitochondrial processing) beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69081631-4	chr8	69081135	69082135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153054, intron 1 of 16)	intron (NM_153054, intron 1 of 16)	-7101.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	8.0	20.5	2.5	3.5	8.0	3.0
Merged-chr8-123443076-4	chr8	123442561	123443561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281803)	promoter-TSS (NM_001281803)	105.0	NM_054046	23854.0	Mm.275127	NM_054046	ENSMUSG00000001482	Def8	AI449518|D8Ertd713e|DEF-8	differentially expressed in FDCP 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90476085-4	chr7	90475589	90476589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026734)	promoter-TSS (NM_026734)	-94.0	NM_026734	68472.0	Mm.289791	NM_026734	ENSMUSG00000030614	Tmem126b	1110001A23Rik	transmembrane protein 126B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76343499-4	chr15	76342965	76343965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025567)	promoter-TSS (NM_025567)	-58.0	NM_025567	66445.0	Mm.29196	NM_025567	ENSMUSG00000022551	Cyc1	2610002H19Rik|AA408921|Cyct1	cytochrome c-1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145122694-4	chr7	145122226	145123226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85393.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	11.0	7.5	1.0	14.0	15.0	10.0
Merged-chr1-151598043-4	chr1	151597533	151598533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	L3|LINE|CR1	26660.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93805125-2	chr16	93804625	93805625	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357118, intron 31 of 35)	PB1D10|SINE|Alu	-10224.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61386025-4	chr9	61385562	61386562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083928, intron 4 of 19)	intron (NM_001083928, intron 4 of 19)	13696.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71616787-4	chr17	71616270	71617270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175639, intron 1 of 17)	CpG	555.0	NM_175639	72515.0	Mm.257762	NM_175639	ENSMUSG00000041057	Wdr43	2610318G08Rik|AU020887|AV024208|Wrd43|mKIAA0007	WD repeat domain 43	protein-coding	34.0	54.5	34.0	16.0	53.5	31.5
Merged-chr3-131698328-4	chr3	131697838	131698838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	132306.0	NM_001289477	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117986825-4	chr11	117986324	117987324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133757)	promoter-TSS (NM_133757)	-33.0	NM_133757	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22805713-4	chr8	22805195	22806195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122820)	promoter-TSS (NM_001122820)	-41.0	NM_001122820	64933.0	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	3.0	31.5	12.5	5.5	36.5	14.5
Merged-chr5-99216878-4	chr5	99216385	99217385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145839)	TTS (NM_145839)	36042.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-24477513-4	chr19	24476998	24477998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026520)	promoter-TSS (NM_026520)	-24.0	NM_026520	68034.0	Mm.440181	NM_026520	ENSMUSG00000074922	Fam122a	2410124L17Rik|2900009I07Rik|Gm9849	family with sequence similarity 122, member A	protein-coding	128.5	238.5	219.0	144.0	228.5	227.5
Merged-chr14-20546580-4	chr14	20546090	20547090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310427)	promoter-TSS (NM_001310427)	-17.0	NM_008914	19056.0	Mm.274432	NM_008914	ENSMUSG00000021816	Ppp3cb	1110063J16Rik|Calnb|CnAbeta|Cnab	protein phosphatase 3, catalytic subunit, beta isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122573636-4	chr3	122573134	122574134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114665, intron 2 of 15)	intron (NM_001114665, intron 2 of 15)	-31953.0	NR_106117	102465764.0		NR_106117	ENSMUSG00000104773	Mir7657	mmu-mir-7657	microRNA 7657	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-17005707-4	chr11	17005208	17006208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	3010.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	128.0	171.0	131.0	131.0	169.0	134.0
Merged-chr10-80173106-4	chr10	80172627	80173627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_152857)	TTS (NR_152857)	183.0	NM_027207	69770.0	Mm.302754	NM_027207	ENSMUSG00000035595	1600002K03Rik	-	RIKEN cDNA 1600002K03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4304422-4	chr19	4303940	4304940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	1782.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	6.5	37.0	21.0	6.5	23.5	41.0
Merged-chr3-153262159-4	chr3	153261673	153262673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 3 of 4)	intron (NM_011372, intron 3 of 4)	36476.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-20815781-4	chr12	20815274	20816274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015521)	promoter-TSS (NR_015521)	5.0	NR_015521	69513.0	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	0.0	0.0	0.5	0.0	2.0	0.5
Merged-chr9-119341142-4	chr9	119340639	119341639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130864)	promoter-TSS (NM_130864)	-155.0	NM_130864	113868.0	Mm.205266	NM_130864	ENSMUSG00000036138	Acaa1a	Acaa|Acaa1|D9Ertd25e|PTL	acetyl-Coenzyme A acyltransferase 1A	protein-coding	57.0	213.0	113.0	61.0	131.5	125.5
Merged-chr2-102987129-4	chr2	102986641	102987641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85476.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-81983326-4	chr3	81982813	81983813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7585.0	NM_019911	56720.0	Mm.258622	NM_019911	ENSMUSG00000028011	Tdo2	AA407491|TDO|TO|chky	tryptophan 2,3-dioxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81352505-4	chr13	81351992	81352992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 83 of 89)	intron (NM_054053, intron 83 of 89)	280652.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45403122-2	chr9	45402622	45403622	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_052823)	promoter-TSS (NM_052823)	-16.0	NM_052823	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0.0	2.0	0.0	0.0	0.0	0.0
Merged-chr17-56009223-4	chr17	56008728	56009728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026530)	promoter-TSS (NM_026530)	27.0	NM_026530	68047.0	Mm.358710	NM_026530	ENSMUSG00000003199	Mpnd	E130307M08Rik	MPN domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135990791-4	chr5	135990280	135991280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4020.0	NM_023742	74198.0	Mm.275574	NM_023742	ENSMUSG00000004947	Dtx2	2610524D08Rik|AA408415|AU022494|Deltex2	deltex 2, E3 ubiquitin ligase	protein-coding	4.0	2.0	1.0	2.5	0.5	3.0
Merged-chr2-124202792-4	chr2	124202277	124203277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 2 of 20)	intron (NM_001290997, intron 2 of 20)	19581.0	NR_040612	75946.0	Mm.415059	NR_040612	ENSMUSG00000086954	4930583P06Rik	-	RIKEN cDNA 4930583P06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-7089890-2	chr1	7089390	7090390	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183028, intron 1 of 5)	ID_B1|SINE|B4	970.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106581945-4	chr1	106581421	106582421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	-35290.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85485442-2	chr12	85484942	85485942	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	11552.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84664098-4	chr8	84663590	84664590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1238.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	51.5	152.5	119.0	36.5	92.0	85.0
Merged-chr8-39403968-3	chr8	39403467	39404467	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	105987.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	6.5	6.5	16.5	27.0	52.5	32.0
Merged-chr17-70835766-2	chr17	70835266	70836266	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11011.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-92356095-4	chr8	92355563	92356563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033641)	promoter-TSS (NR_033641)	57.0	NR_110452	71296.0	Mm.86664	NR_033641	ENSMUSG00000031736	Crnde	4933436C20Rik	colorectal neoplasia differentially expressed (non-protein coding)	ncRNA	5.5	10.0	7.5	5.5	2.0	6.0
Merged-chr11-83572414-4	chr11	83571930	83572930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011338)	TTS (NM_011338)	6206.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84415290-3	chr8	84414779	84415779	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007578)	promoter-TSS (NM_007578)	-85.0	NM_001252060	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-109752681-2	chr7	109752187	109753187	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_020050)	promoter-TSS (NM_020050)	-424.0	NM_020050	56786.0	Mm.240668	NM_020050	ENSMUSG00000031021	Tmem9b	2310004K06Rik|AW539847|D7H11orf15|ICRFP703B1614Q5.3	TMEM9 domain family, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35983979-4	chr16	35983480	35984480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008465, intron 1 of 13)	CpG	617.0	NM_008465	16646.0	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85304912-4	chr12	85304410	85305410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145138, intron 20 of 21)	intron (NM_145138, intron 20 of 21)	16319.0	NM_172414	72350.0	Mm.158810	NM_172414	ENSMUSG00000045064	Zc2hc1c	2810002I04Rik|AV046379|Fam164c	zinc finger, C2HC-type containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32818361-4	chr12	32817855	32818855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-1980.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	5.5	25.5	21.0	13.5	23.5	14.5
Merged-chr16-58556279-4	chr16	58555791	58556791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32038.0	NM_001357434	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	9.5	5.5	20.5	32.0	59.0	51.5
Merged-chr12-36831653-2	chr12	36831153	36832153	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15448.0	NR_039558	100628578.0		NR_039558	ENSMUSG00000092998	Mir5099	mmu-mir-5099|mu-mir-5099	microRNA 5099	ncRNA	0.0	0.5	0.5	0.0	0.5	0.5
Merged-chr5-67822258-4	chr5	67821757	67822757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	25174.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46164749-2	chr17	46164249	46165249	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_019581, exon 4 of 12)	exon (NM_019581, exon 4 of 12)	2685.0	NM_001357745	56055.0	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29273413-2	chr6	29272913	29273913	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023516, intron 1 of 1)	intron (NM_023516, intron 1 of 1)	787.0	NM_023516	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101078923-4	chr15	101078473	101079473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-24574.0	NM_001214911	668225.0	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	4.0	15.5	20.5	8.5	17.0	18.5
Merged-chr1-71988290-4	chr1	71987783	71988783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040454, intron 1 of 2)	intron (NR_040454, intron 1 of 2)	16912.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141506563-4	chr4	141506059	141507059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347235, intron 3 of 14)	intron (NM_001347235, intron 3 of 14)	32038.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	182.0	392.5	216.5	51.0	144.0	114.5
Merged-chr10-41888581-4	chr10	41888084	41889084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013370, intron 1 of 9)	intron (NM_001013370, intron 1 of 9)	1145.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165614980-4	chr1	165614468	165615468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	19573.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-53463697-4	chr3	53463192	53464192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172501)	promoter-TSS (NM_172501)	-125.0	NM_173382	212127.0	Mm.491292	NM_173382	ENSMUSG00000049504	Proser1	2810046L04Rik|9330161F11	proline and serine rich 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116425101-4	chr3	116424609	116425609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamSINE1|SINE|tRNA	-1077.0	NM_001173553	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86531951-2	chr1	86531451	86532451	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5394.0	NM_001360830	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46287008-4	chr11	46286518	46287518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252459, intron 3 of 30)	intron (NM_001252459, intron 3 of 30)	25340.0	NM_001252460	76884.0	Mm.154358	NM_133769	ENSMUSG00000020340	Cyfip2	1500004I01Rik|6430511D02Rik|AA930218|AU022376|Pir121|mKIAA1168	cytoplasmic FMR1 interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-55868487-4	chr7	55867993	55868993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164661, intron 2 of 31)	Lx10|LINE|L1	26422.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73180852-4	chr14	73180357	73181357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134083, intron 14 of 14)	intron (NM_134083, intron 14 of 14)	25994.0	NR_030459	751541.0		NR_030459	ENSMUSG00000076121	Mir687	Mirn687|mir-687|mmu-mir-687	microRNA 687	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180330405-4	chr1	180329902	180330902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081175)	promoter-TSS (NM_001081175)	-74.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-52019033-4	chr14	52018541	52019541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033805, intron 6 of 6)	intron (NM_001033805, intron 6 of 6)	672.0	NM_001253694	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	17.5	52.0	31.5	12.5	20.5	22.5
Merged-chr3-149086294-4	chr3	149085789	149086789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-131654.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.5	6.5	3.5	3.0	12.0	10.5
Merged-chr4-53412678-2	chr4	53412178	53413178	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-27735.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64129353-4	chr13	64128855	64129855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001321)	promoter-TSS (NM_001001321)	-25.0	NM_001001321	70484.0	Mm.133731	NM_001001321	ENSMUSG00000033114	Slc35d2	5730408I21Rik|SQV7L|UGTrel8|hfrc|mUGTrel8	solute carrier family 35, member D2	protein-coding	14.0	10.5	6.5	12.0	14.0	13.5
Merged-chr2-3332627-4	chr2	3332131	3333131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013376)	promoter-TSS (NM_001013376)	-3.0	NM_001013376	227522.0	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36162836-4	chr1	36162318	36163318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198899, intron 29 of 40)	MTEb|LTR|ERVL-MaLR	-18505.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10993162-4	chr16	10992656	10993656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019980)	promoter-TSS (NM_019980)	-35.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-63642760-4	chr13	63642262	63643262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69302.0	NM_001328514	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	2.0	11.5	31.5	8.0	2.5	4.5
Merged-chr1-180764078-4	chr1	180763587	180764587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38044.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28339514-4	chr7	28339012	28340012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013676)	promoter-TSS (NM_013676)	-793.0	NM_013676	20924.0	Mm.285906	NM_013676	ENSMUSG00000003435	Supt5	AL033283|AL033321|AU019549|Spt5|Supt5h	suppressor of Ty 5	protein-coding	24.0	21.5	20.5	24.5	21.0	20.5
Merged-chr7-31151047-4	chr7	31150548	31151548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153431, exon 1 of 19)	non-coding (NR_153431, exon 1 of 19)	123.0	NM_027898	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	96.0	229.0	137.5	99.0	224.0	131.0
Merged-chr10-68283271-4	chr10	68282761	68283761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4535.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	146.5	316.5	213.5	136.5	267.5	196.5
Merged-chr5-112240877-4	chr5	112240376	112241376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11642.0	NM_001312884	12959.0	Mm.40324	NM_021351	ENSMUSG00000066975	Cryba4	-	crystallin, beta A4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117721611-4	chr10	117721102	117722102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10844.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155943739-4	chr4	155943214	155944214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039157)	promoter-TSS (NM_001039157)	-99.0	NM_001039158	140499.0	Mm.371673	NM_021402	ENSMUSG00000023286	Ube2j2	1200007B18Rik|2400008G19Rik|5730472G04Rik|AL022923|NCUBE-2|Ubc6|Ubc6p	ubiquitin-conjugating enzyme E2J 2	protein-coding	19.5	31.0	28.5	17.0	25.0	25.0
Merged-chr19-44582847-4	chr19	44582345	44583345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19991.0	NM_176958	319594.0	Mm.145278	NM_176958	ENSMUSG00000036450	Hif1an	2310046M24Rik|A830014H24Rik|FIH|FIH1	hypoxia-inducible factor 1, alpha subunit inhibitor	protein-coding	0.0	4.0	0.0	0.0	2.5	0.0
Merged-chr12-112592627-2	chr12	112592127	112593127	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198411, intron 1 of 22)	intron (NM_198411, intron 1 of 22)	3843.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-85025675-2	chr6	85025175	85026175	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 1 of 21)	ORR1C1|LTR|ERVL-MaLR	43838.0	NM_177077	75914.0	Mm.159621	NM_177077	ENSMUSG00000033769	Exoc6b	4930569O18Rik|G430127E12Rik|Sec15b|Sec15l2|mKIAA0919	exocyst complex component 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126592846-4	chr8	126592353	126593353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001164598, exon 1 of 2)	exon (NM_001164598, exon 1 of 2)	583.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	103.0	130.0	225.0	126.5	218.5	210.0
Merged-chr2-28498638-4	chr2	28498131	28499131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139197, intron 3 of 6)	intron (NM_139197, intron 3 of 6)	1740.0	NM_139197	227671.0	Mm.484270	NM_139197	ENSMUSG00000026829	Gbgt1	Fgs|Fs	globoside alpha-1,3-N-acetylgalactosaminyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132971750-4	chr4	132971248	132972248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2347.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25297132-4	chr10	25296651	25297651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 1 of 7)	CpG	2012.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78984964-4	chr11	78984459	78985459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159301)	promoter-TSS (NM_001159301)	-35.0	NM_010708	16859.0	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79542741-4	chr3	79542250	79543250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	24929.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	4.0	12.0	13.0	6.0	3.5	7.0
Merged-chr18-73502138-4	chr18	73501639	73502639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-70566.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103253762-2	chr11	103253262	103254262	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	13639.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-54709181-4	chr3	54708669	54709669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019995, exon 11 of 20)	exon (NM_019995, exon 11 of 20)	14046.0	NM_001358015	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	15.5	48.5	34.5	14.5	29.0	22.0
Merged-chr3-129831471-4	chr3	129831004	129832004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026578)	promoter-TSS (NM_026578)	-108.0	NM_026578	68147.0	Mm.24873	NM_026578	ENSMUSG00000028010	Gar1	AA409823|AI326794|C430047J18Rik|Nola1	GAR1 ribonucleoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120436061-4	chr8	120435565	120436565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52801.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22009340-4	chr16	22008852	22009852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357424)	promoter-TSS (NM_001357424)	-132.0	NM_029457	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	63.0	201.5	87.5	0.0	1.0	109.0
Merged-chr17-17587566-4	chr17	17587087	17588087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	36902.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	31.0	99.0	82.5	58.0	100.5	53.0
Merged-chr2-79696676-4	chr2	79696168	79697168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11112.0	NM_172420	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	15.5	68.0	53.5	12.5	36.5	22.0
Merged-chr16-38731103-4	chr16	38730606	38731606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11153.0	NR_152434	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-83634702-4	chr10	83634195	83635195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145220, intron 2 of 20)	intron (NM_145220, intron 2 of 20)	13969.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-91962917-4	chr5	91962417	91963417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073442)	promoter-TSS (NR_073442)	35.0	NR_028429	381650.0	Mm.159453	NR_028429	ENSMUSG00000102644	Thap6	4930534K21Rik|AI448650	THAP domain containing 6	pseudo	12.0	32.0	63.0	17.0	58.0	42.5
Merged-chr5-65247473-4	chr5	65246982	65247982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153391, exon 28 of 37)	exon (NM_153391, exon 28 of 37)	47786.0	NM_153391	213081.0	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95851050-4	chr11	95850535	95851535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD3|LINE|L1	-7782.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	60.0	110.5	74.0	21.5	52.0	34.5
Merged-chr1-91034324-4	chr1	91033834	91034834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	PB1D9|SINE|Alu	-19110.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69368165-4	chr11	69367662	69368662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146019, intron 1 of 39)	intron (NM_146019, intron 1 of 39)	1264.0	NM_146019	216848.0	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	40.0	83.0	55.5	29.0	102.0	55.0
Merged-chr11-99179105-4	chr11	99178595	99179595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-24018.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	30.5	21.5	23.0	9.0	25.5	12.0
Merged-chr15-55381851-4	chr15	55381357	55382357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181277, intron 11 of 47)	intron (NM_181277, intron 11 of 47)	74107.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-99522810-4	chr6	99522309	99523309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-12329	-1816.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-56714809-4	chr6	56714314	56715314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030235)	promoter-TSS (NM_030235)	-91.0	NM_030235	78937.0	Mm.105343	NM_030235	ENSMUSG00000029787	Avl9	5830411G16Rik|D730049P16Rik|mKIAA0241	AVL9 cell migration associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138915974-2	chr1	138915474	138916474	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39024.0	NR_138576	75546.0	Mm.71176	NR_138576	ENSMUSG00000099808	1700019P21Rik	-	RIKEN cDNA 1700019P21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30194696-1	chr7	30194196	30195196	+	1000.0	f1_balb.idr	intron (NM_009795, intron 1 of 10)	intron (NM_009795, intron 1 of 10)	457.0	NM_009795	12336.0	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|Cdps|Css1|D7Ertd146e	calpain, small subunit 1	protein-coding	177.0	350.0	352.0	180.5	379.0	311.0
Merged-chr1-131038310-4	chr1	131037793	131038793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18448.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130822040-2	chr4	130821540	130822540	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 4 of 4)	intron (NM_011520, intron 4 of 4)	29503.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115542872-4	chr5	115542362	115543362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	-16605.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	0.0	23.5	30.5	13.5	10.0	19.5
Merged-chr13-42052364-2	chr13	42051864	42052864	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 1 of 8)	CpG	343.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-21755243-4	chr4	21754746	21755746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290420, intron 11 of 11)	intron (NM_001290420, intron 11 of 11)	11965.0	NM_029840	77032.0	Mm.87238	NM_029840	ENSMUSG00000028251	Tstd3	2610029I01Rik	thiosulfate sulfurtransferase (rhodanese)-like domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31204451-2	chr14	31203951	31204951	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_022656, exon 2 of 21)	exon (NM_022656, exon 2 of 21)	2375.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110002228-4	chr7	110001727	110002727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037959, intron 2 of 2)	RLTR49|LTR|ERVK	4419.0	NR_037959	69781.0	Mm.440728	NR_037959	ENSMUSG00000101585	1600010M07Rik	-	RIKEN cDNA 1600010M07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6191062-4	chr4	6190565	6191565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026534)	promoter-TSS (NM_026534)	-40.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr18-82867749-7	chr18	82867249	82868249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11852.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-63828940-4	chr5	63828444	63829444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	16449.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	3.0	6.5	9.5	1.0	1.0	2.0
Merged-chr11-106218253-2	chr11	106217753	106218753	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361643, intron 1 of 16)	intron (NM_001361643, intron 1 of 16)	1327.0	NM_028074	72047.0	Mm.41367	NM_028074	ENSMUSG00000020705	Ddx42	1810047H21Rik|AW319508|AW556242|B430002H05Rik|RHELP|RNAHP|SF3b125	DEAD (Asp-Glu-Ala-Asp) box polypeptide 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61367964-2	chr18	61367464	61368464	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133249, intron 1 of 11)	intron (NM_133249, intron 1 of 11)	29936.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103400214-4	chr11	103399703	103400703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 2 of 11)	L1MB7|LINE|L1	12461.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-33290304-4	chr4	33289796	33290796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20015.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84762677-4	chr12	84762185	84763185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 2 of 3)	intron (NM_023409, intron 2 of 3)	10427.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-100793353-2	chr10	100792853	100793853	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51718.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-48388638-3	chr9	48388142	48389142	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172921, intron 2 of 8)	RLTR19D|LTR|ERVK	26601.0	NM_172921	244853.0	Mm.325522	NM_172921	ENSMUSG00000044229	Nxpe4	C130036J11|D930028F11Rik|Fam55d	neurexophilin and PC-esterase domain family, member 4	protein-coding	4.0	22.0	10.5	0.0	0.0	0.0
Merged-chr9-57836954-4	chr9	57836456	57837456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2722.0	NM_019689	56380.0	Mm.425588	NM_019689	ENSMUSG00000004661	Arid3b	Bdp|Dri2	AT rich interactive domain 3B (BRIGHT-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28437142-4	chr7	28436631	28437631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022024)	promoter-TSS (NM_022024)	-316.0	NM_022024	63986.0	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44965613-4	chr9	44965098	44966098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346698)	promoter-TSS (NM_001346698)	2.0	NM_001346698	140630.0	Mm.215069	NM_145400	ENSMUSG00000059890	Ube4a	4732444G18Rik|9930123J21Rik|UFD2b	ubiquitination factor E4A	protein-coding	57.5	128.0	113.5	78.0	168.0	111.5
Merged-chr7-28385499-2	chr7	28384999	28385999	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026042, exon 4 of 4)	3' UTR (NM_026042, exon 4 of 4)	-6271.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-85019109-4	chr17	85018591	85019591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159497, intron 5 of 5)	intron (NM_001159497, intron 5 of 5)	-9256.0	NM_009205	20532.0	Mm.227176	NM_009205	ENSMUSG00000024131	Slc3a1	D2H|NBAT|NTAA|RBAT	solute carrier family 3, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90542849-4	chr2	90542347	90543347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	37800.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	25.0	91.0	54.5	25.0	65.5	45.5
Merged-chr8-84200388-3	chr8	84199890	84200890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-8128.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	20.5	67.0	42.0	11.0	54.0	11.0
Merged-chr13-119631893-4	chr13	119631392	119632392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020279, intron 1 of 2)	CpG	8073.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-12270692-4	chr12	12270172	12271172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	8533.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-156210145-4	chr4	156209659	156210659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-5768.0	NM_172417	74183.0	Mm.431343	NM_172417	ENSMUSG00000078486	Perm1	2310042D19Rik	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding	2.5	15.0	7.5	2.5	7.5	4.0
Merged-chr2-33406829-2	chr2	33406329	33407329	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001276332, exon 2 of 2)	3' UTR (NM_001276332, exon 2 of 2)	24495.0	NM_001085507	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55514906-4	chr4	55514406	55515406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	17569.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	2.0	9.0	13.0	14.0	19.5	4.0
Merged-chr16-23270803-2	chr16	23270303	23271303	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-19667.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124493520-2	chr6	124493020	124494020	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181344, intron 1 of 5)	intron (NM_181344, intron 1 of 5)	407.0	NM_181344	232371.0	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45407784-4	chr4	45407294	45408294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009949, intron 1 of 2)	intron (NM_001009949, intron 1 of 2)	972.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	78.0	281.0	244.5	111.5	165.0	147.0
Merged-chr14-45220500-7	chr14	45219949	45220949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027518, intron 1 of 6)	CpG	732.0	NM_027518	70713.0	Mm.343793	NM_027518	ENSMUSG00000049092	Gpr137c	6330416L11Rik|Gm908|TM7SF1L2	G protein-coupled receptor 137C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143758263-4	chr5	143757769	143758769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015486)	promoter-TSS (NR_015486)	-85.0	NR_015486	320064.0	Mm.332820	NR_015486		D130017N08Rik	1700012G11Rik	RIKEN cDNA D130017N08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91478320-4	chr16	91477826	91478826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6889.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80475475-4	chr10	80474992	80475992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-19414.0	NM_139226	246086.0	Mm.250572	NM_139226	ENSMUSG00000045518	Onecut3	OC-3|Oc3	one cut domain, family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83795081-4	chr6	83794571	83795571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019542)	promoter-TSS (NM_019542)	14.0	NM_019542	56174.0	Mm.190650	NM_019542	ENSMUSG00000034744	Nagk	Gnk	N-acetylglucosamine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41341820-4	chr19	41341318	41342318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	43252.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92847959-4	chr16	92847465	92848465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21891.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15761429-4	chr17	15760950	15761950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007690, intron 30 of 35)	intron (NM_007690, intron 30 of 35)	56483.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65196702-6	chr9	65196223	65197223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17967.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129380385-4	chr2	129379896	129380896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR18D_MM|LTR|ERVK	-9257.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	211.5	635.5	311.5	211.5	578.5	320.0
Merged-chr12-51865205-4	chr12	51864701	51865701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35665.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136657697-1	chr1	136657197	136658197	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-25699.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152027725-4	chr4	152027211	152028211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133879)	promoter-TSS (NM_133879)	-40.0	NM_133879	100090.0	Mm.24661	NM_133879	ENSMUSG00000028952	Zbtb48	0610011D15Rik|AI327031|Hkr3|TZAP	zinc finger and BTB domain containing 48	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109011901-4	chr11	109011434	109012434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	91585.0	NM_015732	12006.0	Mm.71710	NM_015732	ENSMUSG00000000142	Axin2	Axi1|Axil|Conductin	axin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154932985-4	chr4	154932489	154933489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4912.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	88.0	90.0	72.5	26.0	49.0	29.5
Merged-chr7-110689513-4	chr7	110689018	110690018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61861.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99926772-4	chr10	99926280	99927280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89041.0	NM_001347156	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95750319-4	chr9	95749785	95750785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311123)	promoter-TSS (NM_001311123)	73.0	NM_001311123	22063.0	Mm.149633	NM_011643	ENSMUSG00000032839	Trpc1	Mtrp1|Trp1|Trrp1	transient receptor potential cation channel, subfamily C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90673493-4	chr2	90672995	90673995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3720.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128967256-4	chr2	128966750	128967750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178404)	promoter-TSS (NM_178404)	-152.0	NM_178404	78751.0	Mm.26377	NM_178404	ENSMUSG00000042851	Zc3h6	4631426G04Rik|4833425H18Rik|AU024389|AW060453|Zc3hdc6|mKIAA2035	zinc finger CCCH type containing 6	protein-coding	77.0	170.5	113.0	54.5	151.0	81.5
Merged-chr7-80853588-2	chr7	80853088	80854088	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8520.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63401171-4	chr4	63400677	63401677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 1 of 21)	intron (NM_001045514, intron 1 of 21)	2268.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-119782517-2	chr3	119782017	119783017	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310711, intron 1 of 13)	intron (NM_001310711, intron 1 of 13)	871.0	NM_001310711	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62812553-2	chr9	62812053	62813053	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010193)	promoter-TSS (NM_010193)	-905.0	NM_010193	14155.0	Mm.24069	NM_010193	ENSMUSG00000032244	Fem1b	mKIAA0396	feminization 1 homolog b (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172423589-4	chr1	172423074	172424074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	47043.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	33.0	17.5	29.0	3.0	8.0	10.5
Merged-chr4-154929571-4	chr4	154929053	154930053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1476.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77924002-4	chr9	77923503	77924503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134255, intron 1 of 7)	intron (NM_134255, intron 1 of 7)	6638.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	7.5	9.0	2.5	7.5	9.0	2.5
Merged-chr17-43077182-4	chr17	43076658	43077658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 4 of 5)	intron (NM_178589, intron 4 of 5)	60603.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	6.5	56.5	37.5	31.0	119.0	88.0
Merged-chr2-24345269-4	chr2	24344773	24345773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159562)	promoter-TSS (NM_001159562)	-18.0	NM_001159562	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30364669-2	chr2	30364169	30365169	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175392, intron 1 of 15)	intron (NM_175392, intron 1 of 15)	334.0	NM_175392	108958.0	Mm.254974	NM_175392	ENSMUSG00000026858	Miga2	5730472N09Rik|AA408683|AI790341|C9orf54|Fam73b|R74766	mitoguardin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147060173-3	chr5	147059660	147060660	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	16412.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	13.0	40.5	21.5	144.5	308.5	231.0
Merged-chr11-87426887-4	chr11	87426399	87427399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199293)	promoter-TSS (NM_001199293)	-692.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128979535-2	chr4	128979035	128980035	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-13689.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123113064-6	chr9	123112558	123113558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081188)	promoter-TSS (NM_001081188)	147.0	NM_026917	69035.0	Mm.28300	NM_026917	ENSMUSG00000025786	Zdhhc3	1110020O22Rik|1810006O10Rik|2210017C02Rik|DHHC-3|GODZ|Gramp1|Zfp373	zinc finger, DHHC domain containing 3	protein-coding	42.0	79.0	66.0	31.0	81.5	81.5
Merged-chr19-46504332-4	chr19	46503838	46504838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	2690.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111094587-4	chr8	111094091	111095091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198308)	promoter-TSS (NM_198308)	-154.0	NM_198308	319518.0	Mm.28350	NM_198308	ENSMUSG00000033624	Pdpr	4930402E16Rik|AU018056|mKIAA1990	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148453011-4	chr5	148452521	148453521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53117.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80428578-4	chr11	80428082	80429082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178616)	promoter-TSS (NM_178616)	-33.0	NM_178616	69077.0	Mm.260539	NM_178616	ENSMUSG00000017428	Psmd11	1700089D09Rik|1810019E17Rik|2610024G20Rik|2810055C24Rik|C78232|P44.5|S9	proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	protein-coding	0.0	0.0	0.5	0.0	1.5	0.5
Merged-chr18-82822042-4	chr18	82821548	82822548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33849.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	6.0	5.0	10.5	6.0	5.5	12.5
Merged-chr15-75679456-4	chr15	75678937	75679937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355589)	promoter-TSS (NM_001355589)	-637.0	NM_028404	72960.0	Mm.182401	NM_028404	ENSMUSG00000000934	Top1mt	2900052H09Rik	DNA topoisomerase 1, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73686966-4	chr12	73686465	73687465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	102169.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56812227-4	chr17	56811739	56812739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009056, intron 1 of 16)	RMER5|LTR|ERV1	18769.0	NM_009056	19725.0	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120581641-4	chr11	120581143	120582143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133796)	promoter-TSS (NM_133796)	-23.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	40.5	126.5	116.5	34.5	85.5	131.5
Merged-chr18-65693754-4	chr18	65693257	65694257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4511.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	81.5	105.5	101.5	73.5	129.0	136.5
Merged-chr8-126590236-4	chr8	126589725	126590725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164598, exon 2 of 2)	3' UTR (NM_001164598, exon 2 of 2)	3211.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	185.5	334.5	290.5	173.0	363.5	269.5
Merged-chr1-152805054-4	chr1	152804549	152805549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 1 of 15)	intron (NM_010877, intron 1 of 15)	4896.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-85124820-4	chr16	85124316	85125316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	48891.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	80.5	143.0	114.5	50.0	134.5	159.5
Merged-chr10-83168618-6	chr10	83168092	83169092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021439, intron 2 of 2)	intron (NM_021439, intron 2 of 2)	169225.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91601962-4	chr16	91601452	91602452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4272.0	NM_030018	77975.0	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70942802-4	chr9	70942292	70943292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324472, intron 1 of 9)	intron (NM_001324472, intron 1 of 9)	-7984.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46499967-4	chr19	46499475	46500475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1673.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16015868-4	chr19	16015391	16016391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30816.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	27.5	14.0	43.0	25.5	60.5	23.5
Merged-chr4-132530360-2	chr4	132529860	132530860	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007512)	TTS (NM_007512)	5054.0	NM_007512	11983.0	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	8.0	13.5	9.5	3.0	21.0	10.5
Merged-chr4-132600707-4	chr4	132600204	132601204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36637.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-66814606-4	chr10	66814099	66815099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105785.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34053647-4	chr11	34053150	34054150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 2 of 20)	LTR103b_Mam|LTR|ERV1?	6722.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-27399632-4	chr16	27399125	27400125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025615, intron 1 of 9)	intron (NM_001025615, intron 1 of 9)	10669.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-56551538-4	chr8	56551045	56552045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001009951)	promoter-TSS (NM_001009951)	411.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	19.0	53.5	45.0	24.0	25.0	20.5
Merged-chr7-89403808-4	chr7	89403301	89404301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008055)	promoter-TSS (NM_008055)	421.0	NM_001360746	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	4.5	15.5	9.0	1.5	4.0	7.5
Merged-chr15-25302831-3	chr15	25302324	25303324	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110940.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.5	3.0	2.5
Merged-chr16-49982415-4	chr16	49981892	49982892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045001, intron 1 of 3)	intron (NR_045001, intron 1 of 3)	1932.0	NR_045001	628951.0	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109473830-4	chr11	109473348	109474348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134038)	promoter-TSS (NM_134038)	-252.0	NM_001029842	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126684175-4	chr8	126683673	126684673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90737.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.0	0.0	0.0	0.5	2.5	3.5
Merged-chr7-75575504-4	chr7	75574997	75575997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 3 of 36)	intron (NM_029332, intron 3 of 36)	119963.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73067131-4	chr17	73066613	73067613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40872.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr16-91001298-4	chr16	91000783	91001783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045515, intron 2 of 32)	intron (NM_001045515, intron 2 of 32)	9812.0	NM_001045515	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11156349-4	chr4	11155855	11156855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021897)	promoter-TSS (NM_021897)	-86.0	NM_001199105	60599.0	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap|p53DINP1	transformation related protein 53 inducible nuclear protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152339463-2	chr3	152339016	152340016	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162375, intron 1 of 13)	intron (NM_001162375, intron 1 of 13)	891.0	NM_174868	215708.0	Mm.135018	NM_174868	ENSMUSG00000054942	Miga1	A930038D06|AI852168|C030011O14Rik|Fam73a|Mita1	mitoguardin 1	protein-coding	15.0	20.5	6.5	2.0	17.5	8.0
Merged-chr9-87023159-1	chr9	87022659	87023659	+	1000.0	f1_c57bl6.idr	intron (NM_001359962, intron 1 of 14)	intron (NM_001359962, intron 1 of 14)	1130.0	NM_001359962	266690.0	Mm.30166	NM_024195	ENSMUSG00000032872	Cyb5r4	2810034J18Rik|B5+B5R|C79736|Cb5cb5r|Ncb5or|b5/b5r|b5b5r	cytochrome b5 reductase 4	protein-coding	17.0	18.0	13.0	17.5	8.0	5.5
Merged-chr15-6578147-4	chr15	6577624	6578624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1723.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6006324-4	chr17	6005831	6006831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357667, intron 6 of 24)	intron (NM_001357667, intron 6 of 24)	-1249.0	NM_001290698	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-34499305-2	chr12	34498805	34499805	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 4 of 27)	intron (NM_001271386, intron 4 of 27)	29584.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16312440-4	chr7	16311925	16312925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133234, intron 2 of 3)	CpG-12701	2842.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18064577-4	chr2	18064085	18065085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045539)	promoter-TSS (NR_045539)	0.0	NM_001252560	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-144002839-4	chr1	144002340	144003340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009061, exon 3 of 5)	exon (NM_009061, exon 3 of 5)	1309.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95951233-4	chr3	95950739	95951739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	21982.0	NM_023210	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	178.0	369.0	334.5	194.0	463.0	349.5
Merged-chr11-87428675-2	chr11	87428175	87429175	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 1 of 30)	intron (NM_001199293, intron 1 of 30)	1084.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	12.0	1.5	1.5	12.0	1.5	1.5
Merged-chr9-62838653-4	chr9	62838136	62839136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033175)	promoter-TSS (NM_001033175)	-151.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100835061-4	chr13	100834562	100835562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GAA)n|Simple_repeat|Simple_repeat	-1635.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184732225-4	chr1	184731736	184732736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008250, exon 1 of 4)	5' UTR (NM_008250, exon 1 of 4)	257.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148886055-4	chr5	148885550	148886550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153572, intron 9 of 10)	intron (NM_153572, intron 9 of 10)	42597.0	NM_153572	231912.0	Mm.397405	NM_153572	ENSMUSG00000041298	Katnal1	-	katanin p60 subunit A-like 1	protein-coding	0.0	1.0	1.0	0.0	0.0	0.0
Merged-chr10-99427292-4	chr10	99426778	99427778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	164047.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129388020-1	chr2	129387520	129388520	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-16881.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	138.0	295.5	241.0	142.5	400.0	263.5
Merged-chr7-29232518-4	chr7	29231956	29232956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033525)	promoter-TSS (NM_001033525)	66.0	NM_001033525	52150.0	Mm.24877	NM_001033525	ENSMUSG00000046410	Kcnk6	D7Ertd764e|Toss|Twik2	potassium inwardly-rectifying channel, subfamily K, member 6	protein-coding	55.0	160.0	150.5	45.5	224.5	113.5
Merged-chr10-80261744-4	chr10	80261190	80262190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347119)	promoter-TSS (NM_001347119)	-678.0	NM_010255	14431.0	Mm.7329	NM_010255	ENSMUSG00000020150	Gamt	AA571402|Spintz1	guanidinoacetate methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75181741-4	chr14	75181238	75182238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	45313.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88341797-4	chr17	88341302	88342302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98902.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	14.5	52.0	42.5	36.5	36.0	28.0
Merged-chr19-34192645-4	chr19	34192152	34193152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360717)	promoter-TSS (NM_001360717)	-282.0	NM_001360717	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4_GL456216_random-17295-1	chr4_GL456216_random	16795	17795	+	1000.0	f0_c57.idr	intron (NM_001033326, intron 1 of 6)	intron (NM_001033326, intron 1 of 6)	1414.0	NM_001033326	236082.0	Mm.305345	NM_001033326	ENSMUSG00000063897	Dhrsx	C80877|D4Ertd296e|Dhrsxy|Pscad	dehydrogenase/reductase (SDR family) X chromosome	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-47251311-4	chr4	47250748	47251748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 5 of 39)	intron (NM_009928, intron 5 of 39)	43236.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45583839-4	chr14	45583330	45584330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER34A|LTR|ERV1	40120.0	NR_045809	67651.0	Mm.55930	NR_045809	ENSMUSG00000115324	4930527F14Rik	-	RIKEN cDNA 4930527F14 gene	ncRNA	0.0	0.0	5.5	5.0	1.0	4.0
Merged-chr5-90877066-4	chr5	90876586	90877586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1B|DNA|hAT-Tip100	-14159.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119112742-4	chr2	119112238	119113238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011234)	promoter-TSS (NM_011234)	-79.0	NM_011234	19361.0	Mm.330492	NM_011234	ENSMUSG00000027323	Rad51	AV304093|Rad51a|Reca	RAD51 recombinase	protein-coding	21.0	65.5	30.0	34.0	52.5	35.0
Merged-chr13-73767349-4	chr13	73766851	73767851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 1 of 24)	intron (NM_001360694, intron 1 of 24)	3654.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191198120-4	chr1	191197615	191198615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14782.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-76962053-4	chr10	76961572	76962572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021568)	promoter-TSS (NM_021568)	-125.0	NM_021568	59093.0	Mm.272803	NM_021568	ENSMUSG00000001120	Pcbp3	AlphaCP-3	poly(rC) binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19694030-2	chr7	19693530	19694530	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1371.0	NM_007469	11812.0	Mm.182440	NM_007469	ENSMUSG00000040564	Apoc1	Apo-CIB|ApoC-IB|apo-CI|apoC-I	apolipoprotein C-I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50134311-4	chr11	50133806	50134806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029745, intron 1 of 20)	Arthur1|DNA|hAT-Tip100	2946.0	NM_029745	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16285535-4	chr7	16284995	16285995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172297)	promoter-TSS (NM_172297)	-836.0	NM_172297	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	2.0	13.0	8.0	4.5	13.5	12.5
Merged-chr1-181212050-4	chr1	181211557	181212557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145514)	promoter-TSS (NM_145514)	-79.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12502148-4	chr19	12501648	12502648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172442)	promoter-TSS (NM_172442)	-152.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91609840-2	chr16	91609340	91610340	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	9159.0	NM_001099738	246738.0	Mm.101927	NM_138664	ENSMUSG00000039763	Dnajc28	BC020175|ORF28	DnaJ heat shock protein family (Hsp40) member C28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-26579960-3	chr14	26579457	26580457	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145969, intron 1 of 17)	CpG	407.0	NM_145969	211922.0	Mm.260512	NM_145969	ENSMUSG00000040818	Dennd6a	Fam116a	DENN/MADD domain containing 6A	protein-coding	42.5	179.0	123.0	73.0	118.0	151.5
Merged-chr11-3152850-4	chr11	3152353	3153353	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 14 of 32)	B3A|SINE|B2	28832.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-31759864-4	chr18	31759290	31760290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001242430)	promoter-TSS (NM_001242430)	-34.0	NM_153515	225339.0	Mm.290804	NM_153515	ENSMUSG00000041915	Ammecr1l	5430429D03Rik|AU022236|AU040755|AW111353|E230022H04Rik	AMME chromosomal region gene 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4524630-4	chr8	4524108	4525108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026058, exon 11 of 11)	3' UTR (NM_026058, exon 11 of 11)	31203.0	NM_026058	67260.0	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-119175269-4	chr6	119174897	119175897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033379, exon 1 of 9)	exon (NM_001033379, exon 1 of 9)	144.0	NM_001033379	319618.0	Mm.250197	NM_001033379	ENSMUSG00000041477	Dcp1b	B930050E02Rik	decapping mRNA 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62498730-2	chr10	62498230	62499230	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 2 of 3)	RSINE1|SINE|B4	9027.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90491014-4	chr3	90490510	90491510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133854)	promoter-TSS (NM_133854)	3.0	NM_133854	20615.0	Mm.331182	NM_133854	ENSMUSG00000001018	Snapin	25kDa|AA407989|AV026596|Bloc1s7|Snap25bp|Snapap	SNAP-associated protein	protein-coding	9.5	10.0	21.0	14.5	12.5	19.5
Merged-chr7-98749961-2	chr7	98749461	98750461	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46714.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr10-75146209-4	chr10	75145713	75146713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081412, intron 8 of 22)	intron (NM_001081412, intron 8 of 22)	-65860.0	NM_153406	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-77904371-4	chr14	77903882	77904882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178825, exon 1 of 7)	5' UTR (NM_178825, exon 1 of 7)	143.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	17.5	63.5	56.0	14.5	20.5	35.5
Merged-chr14-65837382-4	chr14	65836923	65837923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145944, exon 1 of 9)	5' UTR (NM_145944, exon 1 of 9)	121.0	NM_145944	67179.0	Mm.214576	NM_145944	ENSMUSG00000022035	Ccdc25	2610528H13Rik|NSrp70	coiled-coil domain containing 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115331183-4	chr6	115330668	115331668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-29783.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24444905-4	chr13	24444405	24445405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111110, intron 11 of 16)	L1MEf|LINE|L1	29783.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45062012-2	chr7	45061512	45062512	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022999)	promoter-TSS (NM_022999)	-360.0	NM_022999	65116.0	Mm.379098	NM_022999	ENSMUSG00000007837	Prrg2	1600014G02Rik|2510041M06Rik|N4WBP1	proline-rich Gla (G-carboxyglutamic acid) polypeptide 2	protein-coding	19.5	30.0	26.0	23.5	30.0	28.0
Merged-chr10-60367244-4	chr10	60366742	60367742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028732, intron 4 of 6)	(CCCCCT)n|Simple_repeat|Simple_repeat	20391.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45113702-2	chr2	45113199	45114199	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001355289)	promoter-TSS (NM_001355289)	-420.0	NM_015753	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151720449-2	chr1	151719949	151720949	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34278.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132816605-4	chr4	132816106	132817106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20242.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	18.5	98.5	38.0	23.0	69.5	41.5
Merged-chr4-135355657-2	chr4	135355157	135356157	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2443.0	NM_001130477	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-86868392-2	chr10	86867892	86868892	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 51 of 68)	intron (NM_138673, intron 51 of 68)	89387.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62920120-2	chr10	62919620	62920620	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175194)	promoter-TSS (NM_175194)	-513.0	NM_175194	73132.0	Mm.37457	NM_175194	ENSMUSG00000071253	Slc25a16	3110021G18Rik|GDA|GDC|HGT.1|ML7	solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-193130243-4	chr1	193129750	193130750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151719)	promoter-TSS (NR_151719)	1.0	NM_145415	215193.0	Mm.173758	NM_145415	ENSMUSG00000016181	Diexf	AA408296|AW045375|Def	digestive organ expansion factor homolog (zebrafish)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78591960-4	chr15	78591461	78592461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_B_Mam|LINE|RTE-X	-5086.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	8.0	38.0	11.0	8.0	12.5	28.0
Merged-chr10-60831563-4	chr10	60831061	60832061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359273)	promoter-TSS (NM_001359273)	20.0	NM_029770	107449.0	Mm.290433	NM_029770	ENSMUSG00000020099	Unc5b	6330415E02Rik|A630020F16|D10Bwg0792e|Unc5h2	unc-5 netrin receptor B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25275247-4	chr8	25274727	25275727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31043.0	NR_040352	74489.0	Mm.256468	NR_040352	ENSMUSG00000110140	5430421F17Rik	-	RIKEN cDNA 5430421F17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98831541-4	chr15	98831057	98832057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016781)	promoter-TSS (NM_016781)	-49.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26933486-4	chr2	26933002	26934002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011512)	promoter-TSS (NM_011512)	9.0	NM_011512	20932.0	Mm.300594	NM_011512	ENSMUSG00000014867	Surf4	AL033340|AL033373|Surf-4	surfeit gene 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148552686-4	chr5	148552210	148553210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011908)	promoter-TSS (NM_011908)	78.0	NM_011908	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	15.5	23.0	20.5	1.5	14.0	18.0
Merged-chr5-109557340-6	chr5	109556760	109557760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310694, intron 2 of 7)	intron (NM_001310694, intron 2 of 7)	1733.0	NM_016715	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	111.0	306.5	222.5	97.5	340.5	160.0
Merged-chr19-46863759-4	chr19	46863248	46864248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102471, intron 4 of 6)	intron (NM_001102471, intron 4 of 6)	98603.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40651602-7	chr9	40651100	40652100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34364.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	10.0	32.5	19.5	19.5	36.0	38.5
Merged-chr19-5877810-4	chr19	5877327	5878327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361973)	promoter-TSS (NM_001361973)	5.0	NM_001361974	107375.0	Mm.5323	NM_134154	ENSMUSG00000024818	Slc25a45	AW491445	solute carrier family 25, member 45	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-88482647-4	chr9	88482152	88483152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019796)	promoter-TSS (NM_019796)	-255.0	NM_001284328	56403.0	Mm.260545	NM_019666	ENSMUSG00000032423	Syncrip	2610109K23Rik|4632417O19Rik|GRY-RBP|Nsap1|Nsap1l|hnRNP Q|pp68	synaptotagmin binding, cytoplasmic RNA interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165762595-2	chr1	165762095	165763095	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1163.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121330196-4	chr9	121329670	121330670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	B4|SINE|B4	32668.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31200464-2	chr14	31199964	31200964	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347583, intron 3 of 13)	intron (NM_001347583, intron 3 of 13)	6362.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32509235-2	chr9	32508735	32509735	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	32217.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66124880-4	chr9	66124379	66125379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019727)	promoter-TSS (NM_019727)	7.0	NM_019727	56440.0	Mm.271891	NM_019727	ENSMUSG00000032382	Snx1	-	sorting nexin 1	protein-coding	1.0	5.0	4.5	0.0	2.0	3.0
Merged-chr2-117390350-4	chr2	117389847	117390847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47470.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0.0	14.0	5.0	2.5	2.0	3.5
Merged-chr5-21131367-4	chr5	21130871	21131871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44908.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101273737-2	chr15	101273237	101274237	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010444, intron 6 of 6)	intron (NM_010444, intron 6 of 6)	6891.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79973686-2	chr10	79973186	79974186	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_130455, exon 3 of 9)	exon (NM_130455, exon 3 of 9)	2962.0	NM_130455	170483.0	Mm.391566	NM_130455	ENSMUSG00000035745	Grin3b	GluN3B|NR3B	glutamate receptor, ionotropic, NMDA3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-8099945-4	chr14	8099447	8100447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	1736.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114745355-4	chr11	114744865	114745865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034878, intron 8 of 12)	intron (NM_001034878, intron 8 of 12)	17953.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90365541-5	chr5	90365071	90366071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198010, intron 1 of 32)	CpG	614.0	NM_030886	81702.0	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	34.5	96.0	61.0	37.5	97.0	63.5
Merged-chr13-35740780-4	chr13	35740293	35741293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001123386)	promoter-TSS (NM_001123386)	-609.0	NM_001123386	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8327007-4	chr12	8326492	8327492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021429, intron 4 of 6)	intron (NM_021429, intron 4 of 6)	13559.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr1-144250601-4	chr1	144250118	144251118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1514.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158110296-2	chr2	158109796	158110796	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-18499.0	NR_040609	72340.0	Mm.443395	NR_040609	ENSMUSG00000100860	2010009K17Rik	-	RIKEN cDNA 2010009K17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101659220-4	chr13	101658724	101659724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33406.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-109960481-4	chr7	109959986	109960986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021494)	promoter-TSS (NM_021494)	-16.0	NM_001311139	19347.0	Mm.21904	NM_021494	ENSMUSG00000035901	Dennd5a	1500012B19Rik|AJ245569|AW496491|ORF37|Rab6ip1|mKIAA1091	DENN/MADD domain containing 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-189688204-4	chr1	189687715	189688715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081363)	promoter-TSS (NM_001081363)	-129.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	2.5	3.0	2.0	1.5	14.5	5.0
Merged-chr10-91171669-4	chr10	91171149	91172149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011605)	promoter-TSS (NM_011605)	-30.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34336969-4	chr5	34336440	34337440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304270)	promoter-TSS (NM_001304270)	8.0	NM_001304270	19822.0	Mm.21281	NM_011278	ENSMUSG00000029110	Rnf4	AU018689|Gtrgeo8|SNURF	ring finger protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181288127-4	chr2	181287644	181288644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198169)	promoter-TSS (NM_198169)	-178.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23272365-4	chr16	23271867	23272867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-18103.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92216380-4	chr1	92215873	92216873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-36032.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	49.5	88.0	58.0	39.5	97.0	69.5
Merged-chr4-142089050-4	chr4	142088541	142089541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_027137)	TTS (NR_027137)	-4737.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45664101-2	chr14	45663603	45664603	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5960.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	77.5	209.0	109.0	39.5	100.0	58.0
Merged-chr10-91182151-3	chr10	91181652	91182652	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Asp-GAY|tRNA|tRNA	-10533.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120835093-4	chr7	120834593	120835593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7738.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-111115892-4	chr5	111115369	111116369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	111725.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	4.5	25.0	20.0	9.5	25.0	31.0
Merged-chr8-117079903-4	chr8	117079413	117080413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 3 of 42)	intron (NM_029686, intron 3 of 42)	2536.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29247444-4	chr11	29246970	29247970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025740)	promoter-TSS (NM_025740)	-198.0	NM_025740	216618.0	Mm.128663	NM_025740	ENSMUSG00000020462	Cfap36	2300003H10|4931428D14Rik|Ccdc104	cilia and flagella associated protein 36	protein-coding	7.0	4.0	1.0	0.0	0.0	1.0
Merged-chr3-59186572-3	chr3	59186093	59187093	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302203, intron 1 of 2)	intron (NM_001302203, intron 1 of 2)	8511.0	NM_001302203	84111.0	Mm.60267	NM_032399	ENSMUSG00000051431	Gpr87	-	G protein-coupled receptor 87	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58822895-2	chr15	58822395	58823395	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175212, exon 1 of 7)	exon (NM_175212, exon 1 of 7)	532.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-76579598-4	chr13	76579094	76580094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030174, intron 1 of 20)	intron (NM_030174, intron 1 of 20)	194633.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	17.5	10.0	10.5	8.0	7.0	20.0
Merged-chr19-53600860-3	chr19	53600380	53601380	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007790, intron 1 of 28)	CpG	484.0	NM_007790	13006.0	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	0.0	1.0	0.5	4.0	0.0	3.0
Merged-chr4-137357733-4	chr4	137357216	137358216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243769)	promoter-TSS (NM_001243769)	43.0	NM_009861	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	27.5	48.5	41.5	22.0	73.0	45.0
Merged-chr4-149841112-4	chr4	149840613	149841613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66846.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	5.0	2.0	0.5	0.0	9.5	0.0
Merged-chr16-91406277-4	chr16	91405764	91406764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008349)	promoter-TSS (NM_008349)	29.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35507335-4	chr2	35506828	35507828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-45879.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-124143847-4	chr9	124143375	124144375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22332.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53203818-4	chr4	53203308	53204308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42388.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6308633-2	chr19	6308133	6309133	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033342, intron 1 of 36)	intron (NM_001033342, intron 1 of 36)	2176.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83317196-4	chr6	83316701	83317701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008638, intron 1 of 7)	intron (NM_008638, intron 1 of 7)	403.0	NM_008638	17768.0	Mm.443	NM_008638	ENSMUSG00000005667	Mthfd2	AW558851|NMDMC	methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-96950138-2	chr7	96949638	96950638	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1389.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	0.0	1.5	3.0	0.0	1.5	3.0
Merged-chr10-20347753-4	chr10	20347253	20348253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027930)	promoter-TSS (NM_027930)	-66.0	NM_027930	71804.0	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99250023-4	chr5	99249534	99250534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	2893.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118116222-4	chr7	118115717	118116717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170669)	promoter-TSS (NM_170669)	-70.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	32.5	52.0	52.5	22.0	80.0	39.0
Merged-chr16-23988766-4	chr16	23988265	23989265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009744)	promoter-TSS (NM_009744)	87.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56276921-4	chr17	56276411	56277411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174989)	promoter-TSS (NM_174989)	-144.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130802230-4	chr4	130801723	130802723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	9686.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	28.0	139.0	65.5	29.5	136.0	64.5
Merged-chr8-11557597-2	chr8	11557097	11558097	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302459)	promoter-TSS (NM_001302459)	-813.0	NM_001302459	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-59212706-2	chr6	59212206	59213206	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081145)	TTS (NM_001081145)	3836.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45296316-2	chr9	45295816	45296816	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-22784.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126482611-4	chr7	126482129	126483129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4726.0	NM_172745	233870.0	Mm.197829	NM_172745	ENSMUSG00000073838	Tufm	2300002G02Rik|C76308|C76389|EF-TuMT|EFTU	Tu translation elongation factor, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102046874-4	chr5	102046375	102047375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	23046.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83045756-4	chr11	83045252	83046252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5219.0	NR_073524	237887.0	Mm.341645	NM_181542	ENSMUSG00000072621	Slfn10-ps	Slfn10|mFLJ00257	schlafen 10, pseudogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-93340844-4	chr15	93340331	93341331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3896.0	NM_024189	67057.0	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102248807-4	chr11	102248305	102249305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153544)	promoter-TSS (NM_153544)	-77.0	NM_153544	217216.0	Mm.247335	NM_153544	ENSMUSG00000034773	BC030867	-	cDNA sequence BC030867	protein-coding	6.5	13.5	17.5	8.0	31.5	22.0
Merged-chr2-98665145-4	chr2	98664652	98665652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	SYNREP_MM|Satellite|Satellite	1197495.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.0	1.5	0.5	0.0	1.5	0.5
Merged-chr10-8767482-2	chr10	8766982	8767982	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	118588.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	20.0	5.0	12.5	6.0	12.5	19.5
Merged-chr5-30907816-4	chr5	30907292	30908292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024460)	promoter-TSS (NM_024460)	-4.0	NM_024460	67695.0	Mm.21450	NM_024460	ENSMUSG00000038803	Ost4	2310016E02Rik	oligosaccharyltransferase complex subunit 4 (non-catalytic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35089278-4	chr17	35088779	35089779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178592)	promoter-TSS (NM_178592)	-12.0	NM_178592	193742.0	Mm.43745	NM_178592	ENSMUSG00000007036	Abhd16a	AI326074|Bat-5|Bat5|D17H6S82E|NG26	abhydrolase domain containing 16A	protein-coding	74.5	174.0	132.5	63.0	165.5	112.0
Merged-chr13-74062247-4	chr13	74061731	74062731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028959)	promoter-TSS (NM_028959)	54.0	NM_028959	74470.0	Mm.73234	NM_028959	ENSMUSG00000021572	Cep72	2610029E11Rik|4933440J22Rik	centrosomal protein 72	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120951741-4	chr4	120951229	120952229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005788)	promoter-TSS (NM_001005788)	-28.0	NM_001005788	381549.0	Mm.331840	NM_001005788	ENSMUSG00000064141	Zfp69	Gm1029|Krab2|Zfp63	zinc finger protein 69	protein-coding	29.5	86.5	69.5	42.0	102.5	76.0
Merged-chr3-87334180-4	chr3	87333641	87334641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23740.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	99.0	337.5	230.0	138.0	286.5	199.5
Merged-chr17-29601569-4	chr17	29601065	29602065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198647, intron 12 of 12)	intron (NM_198647, intron 12 of 12)	-5260.0	NR_045447	74092.0	Mm.396264	NR_045447	ENSMUSG00000089900	Tbc1d22bos	0610038L08Rik	TBC1 domain family, member 22B, opposite strand	ncRNA	0.0	0.0	1.0	10.5	0.0	3.0
Merged-chr2-104027767-4	chr2	104027273	104028273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020593)	promoter-TSS (NM_020593)	-26.0	NM_020593	57443.0	Mm.143768	NM_020593	ENSMUSG00000027180	Fbxo3	1200002G09Rik|1700026K02Rik|AI046358|Fba	F-box protein 3	protein-coding	10.0	35.5	30.0	11.0	25.5	23.5
Merged-chr9-123058891-4	chr9	123058377	123059377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177911, intron 10 of 13)	L1M4|LINE|L1	24136.0	NM_177911	331046.0	Mm.195309	NM_177911	ENSMUSG00000025787	Tgm4	9530008N10Rik|Eapa1|TGP	transglutaminase 4 (prostate)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-35371356-7	chr15	35370864	35371864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177151)	promoter-TSS (NM_177151)	-182.0	NM_177151	666173.0	Mm.309250	NM_177151	ENSMUSG00000037646	Vps13b	1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|mKIAA0532|mKIAA5032	vacuolar protein sorting 13B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111027770-4	chr8	111027290	111028290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190800)	promoter-TSS (NM_001190800)	-20.0	NM_001190800	234733.0	Mm.482176	NM_172284	ENSMUSG00000033658	Ddx19b	2810457M08Rik|4921519L13Rik|AW260119	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79286803-4	chr3	79286303	79287303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-58573.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	24.5	54.5	37.0	13.0	75.5	18.0
Merged-chr15-28027770-2	chr15	28027270	28028270	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	-1922.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-39298669-3	chr8	39298163	39299163	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_044988, intron 1 of 3)	intron (NR_044988, intron 1 of 3)	683.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	5.0	2.0	4.0	32.0	79.0	82.0
Merged-chr18-34222867-4	chr18	34222360	34223360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007462, intron 1 of 15)	intron (NM_007462, intron 1 of 15)	-1088.0	NR_040534	633395.0	Mm.414290	NR_040534	ENSMUSG00000073607	Gm10548	-	ribosomal protein L29 pseudogene	pseudo	40.0	72.5	43.0	19.5	40.5	41.5
Merged-chr12-110764743-4	chr12	110764245	110765245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347428, intron 1 of 2)	intron (NM_001347428, intron 1 of 2)	26813.0	NM_001347428	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-35165423-4	chr4	35164913	35165913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7929.0	NM_178061	214944.0	Mm.32968	NM_178061	ENSMUSG00000073910	Mob3b	8430436F23Rik|A430018A01Rik|Mobkl2b	MOB kinase activator 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-18234996-4	chr14	18234485	18235485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011584, intron 1 of 7)	intron (NM_011584, intron 1 of 7)	4121.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-133610384-4	chr1	133609903	133610903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009227)	promoter-TSS (NM_009227)	-123.0	NM_009227	20643.0	Mm.249110	NM_009227	ENSMUSG00000090553	Snrpe	AL022645|C76690|SME	small nuclear ribonucleoprotein E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126155271-4	chr4	126154756	126155756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025856, intron 6 of 11)	MTE2a|LTR|ERVL-MaLR	7253.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49190210-4	chr13	49189713	49190713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013610, intron 1 of 3)	intron (NM_013610, intron 1 of 3)	2666.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77755470-2	chr15	77754970	77755970	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081970)	promoter-TSS (NM_001081970)	-197.0	NM_001081970	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94969159-1	chr16	94968659	94969659	+	1000.0	f0_balb.idr	intron (NM_001025584, intron 1 of 4)	intron (NM_001025584, intron 1 of 4)	28537.0	NM_001025584	16522.0	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11922332-3	chr19	11921839	11922839	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172635, intron 5 of 18)	intron (NM_172635, intron 5 of 18)	-1389.0	NR_105960	102465601.0		NR_105960	ENSMUSG00000104979	Mir6994	mmu-mir-6994	microRNA 6994	ncRNA	6.0	37.0	22.0	9.0	43.5	39.0
Merged-chr17-70987554-4	chr17	70987060	70988060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023402, intron 1 of 3)	B4A|SINE|B4	2956.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83129747-4	chr15	83129253	83130253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 6 of 7)	intron (NM_001347082, intron 6 of 7)	-6952.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100761720-4	chr15	100761218	100762218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021530)	promoter-TSS (NM_021530)	-29.0	NM_021530	59033.0	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	11.5	18.0	27.0	6.5	34.5	19.5
Merged-chr7-132610659-4	chr7	132610163	132611163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029609)	promoter-TSS (NM_029609)	20.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69682535-2	chr11	69682035	69683035	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163571)	promoter-TSS (NM_001163571)	-451.0	NM_001163571	80886.0	Mm.284592	NM_030702	ENSMUSG00000005204	Senp3	AA408656|Smt3ip|Smt3ip1	SUMO/sentrin specific peptidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120835905-2	chr7	120835406	120836406	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-6925.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104111354-3	chr8	104110851	104111851	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 1 of 11)	intron (NM_009868, intron 1 of 11)	-5478.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32496338-4	chr2	32495842	32496842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39017.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17866760-4	chr17	17866255	17867255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-11567.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	124.5	234.0	166.0	149.0	216.5	150.5
Merged-chr11-72538341-4	chr11	72537870	72538870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029932, exon 5 of 12)	exon (NM_029932, exon 5 of 12)	11876.0	NM_029932	77577.0	Mm.46185	NM_029932	ENSMUSG00000020798	Spns3	9830002I17Rik	spinster homolog 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118522243-4	chr7	118521729	118522729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304758, intron 5 of 6)	ORR1E|LTR|ERVL-MaLR	11127.0	NM_001304758	12850.0	Mm.20634	NM_009940	ENSMUSG00000030652	Coq7	clk-1	demethyl-Q 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80219406-4	chr15	80218887	80219887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14693.0	NM_001357659	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	31.5	123.0	94.0	26.0	65.5	67.5
Merged-chr16-57227902-2	chr16	57227402	57228402	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 1 of 17)	intron (NM_026254, intron 1 of 17)	3564.0	NM_026254	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125475816-4	chr5	125475345	125476345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030210)	promoter-TSS (NM_030210)	-28.0	NM_030210	78894.0	Mm.431573	NM_030210	ENSMUSG00000029482	Aacs	2210408B16Rik|SUR5	acetoacetyl-CoA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95892767-1	chr3	95892267	95893267	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_001346514)	promoter-TSS (NM_001346514)	-762.0	NM_001346514	229600.0	Mm.89556	NM_153513	ENSMUSG00000038543	BC028528	L259	cDNA sequence BC028528	protein-coding	15.0	23.0	12.5	4.0	25.5	21.0
Merged-chr3-108910532-2	chr3	108910032	108911032	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025845, intron 1 of 5)	intron (NM_025845, intron 1 of 5)	1197.0	NM_025845	66921.0	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111180157-4	chr8	111179664	111180664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 10 of 25)	intron (NM_009149, intron 10 of 25)	-34666.0	NR_040364	434350.0	Mm.442061	NR_040363		9430091E24Rik	-	RIKEN cDNA 9430091E24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109693369-4	chr8	109692875	109693875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028018)	promoter-TSS (NM_028018)	-81.0	NM_001361562	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70873613-7	chr8	70873098	70874098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026964)	promoter-TSS (NM_026964)	-108.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	91.0	242.0	168.5	106.0	404.0	229.0
Merged-chr3-97995013-4	chr3	97994489	97995489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18549.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111182072-4	chr12	111181575	111182575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130987, intron 1 of 3)	intron (NR_130987, intron 1 of 3)	2416.0	NR_130987	78062.0	Mm.427248	NR_130987	ENSMUSG00000083193	4930595D18Rik	-	RIKEN cDNA 4930595D18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152616235-4	chr1	152615748	152616748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	(TTTTG)n|Simple_repeat|Simple_repeat	8969.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119320550-4	chr4	119320048	119321048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028677)	promoter-TSS (NM_028677)	-25.0	NM_001110130	66101.0	Mm.304080	NM_028677	ENSMUSG00000060288	Ppih	1100001J08Rik|2010111B15Rik|4833408F11Rik|AI464484|CYP-20|CYPH|D4Wsu43e	peptidyl prolyl isomerase H	protein-coding	49.0	97.5	95.0	51.0	89.0	54.5
Merged-chr2-52897239-4	chr2	52896779	52897779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	39411.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69012803-4	chr8	69012325	69013325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75911.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	68.5	99.0	69.0	33.5	35.0	33.0
Merged-chr5-36713349-4	chr5	36712846	36713846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17325.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	22.0	59.5	49.5	36.0	51.5	37.0
Merged-chr18-39489949-4	chr18	39489451	39490451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2706.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119322359-4	chr9	119321888	119322888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045693)	promoter-TSS (NR_045693)	39.0	NR_045693	108737.0	Mm.293565	NM_133985	ENSMUSG00000036737	Oxsr1	2210022N24Rik|2810422B09Rik|AI462649|AW209236|Osr1|mKIAA1101	oxidative-stress responsive 1	protein-coding	52.0	101.0	94.0	72.0	185.0	128.0
Merged-chr11-80168788-4	chr11	80168330	80169330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 6 of 10)	intron (NM_172133, intron 6 of 10)	14668.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	16.0	31.0	26.0	16.5	44.0	22.0
Merged-chr13-22035732-4	chr13	22035221	22036221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175665)	promoter-TSS (NM_175665)	-78.0	NM_175659	319168.0	Mm.250564	NM_175659	ENSMUSG00000069302	Hist1h2ah	-	histone cluster 1, H2ah	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118810167-2	chr9	118809667	118810667	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 4 of 13)	intron (NM_001113514, intron 4 of 13)	98475.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	1.0	1.0	4.0	1.5	1.5
Merged-chr11-69097627-4	chr11	69097125	69098125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1324.0	NM_011065	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102454258-2	chr15	102453758	102454758	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_144547, exon 11 of 11)	exon (NM_144547, exon 11 of 11)	-4912.0	NM_001170911	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123518833-4	chr8	123518320	123519320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018855)	promoter-TSS (NM_018855)	-15.0	NM_018855	104346.0	Mm.117265	NM_018855	ENSMUSG00000040220	Gas8	Gas11	growth arrest specific 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3752523-4	chr2	3752025	3753025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	39067.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40457635-4	chr9	40457132	40458132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 1 of 20)	intron (NM_001357617, intron 1 of 20)	-1868.0	NM_172768	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	8.5	13.5	5.5	9.0	2.5	7.5
Merged-chr3-86774707-4	chr3	86774175	86775175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077688, intron 54 of 54)	Tigger6a|DNA|TcMar-Tigger	146209.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-38228027-4	chr7	38227530	38228530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024413)	promoter-TSS (NM_024413)	-36.0	NM_024413	72287.0	Mm.333798	NM_024413	ENSMUSG00000074170	Plekhf1	1810013P09Rik|APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology domain containing, family F (with FYVE domain) member 1	protein-coding	4.5	14.5	3.0	3.5	0.5	2.5
Merged-chr17-56266075-4	chr17	56265585	56266585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	9292.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	12.5	25.5	10.0	15.5	29.0	13.5
Merged-chr11-109413783-4	chr11	109413265	109414265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12181.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-12317576-4	chr2	12317073	12318073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15629.0	NM_001001309	241226.0	Mm.329997	NM_001001309	ENSMUSG00000026768	Itga8	AI447669	integrin alpha 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67536179-4	chr10	67535683	67536683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1686.0	NM_010118	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79365462-1	chr15	79364962	79365962	+	1000.0	f1_balb.idr	exon (NM_001253817, exon 8 of 9)	exon (NM_001253817, exon 8 of 9)	9838.0	NR_035464	100316695.0		NR_035464	ENSMUSG00000088901	Mir1943	mir-1943|mmu-mir-1943	microRNA 1943	ncRNA	3.5	0.0	2.0	4.5	4.0	8.0
Merged-chr14-73168789-4	chr14	73168305	73169305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134083, intron 10 of 14)	intron (NM_134083, intron 10 of 14)	26020.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-15300325-4	chr10	15299815	15300815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-491462.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62073871-4	chr18	62073368	62074368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	106113.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91153089-2	chr6	91152589	91153589	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3726.0	NM_144919	232232.0	Mm.206218	NM_144919	ENSMUSG00000034245	Hdac11	-	histone deacetylase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19920617-4	chr7	19920100	19921100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027514, intron 1 of 7)	intron (NM_027514, intron 1 of 7)	543.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106305983-4	chr11	106305488	106306488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4092.0	NM_008117	14599.0	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-23921961-4	chr1	23921428	23922428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357395, intron 1 of 10)	CpG	453.0	NM_001357395	98366.0	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	18.5	69.5	40.0	24.0	53.0	38.5
Merged-chr3-133544340-4	chr3	133543823	133544823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346736)	promoter-TSS (NM_001346736)	67.0	NM_001040400	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86397118-4	chr6	86396617	86397617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025823)	promoter-TSS (NM_025823)	33.0	NM_001355687	66881.0	Mm.30849	NM_025823	ENSMUSG00000029998	Pcyox1	1200015P13Rik|AI115532|AI448340|PCL1|Pcly	prenylcysteine oxidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50504318-4	chr17	50503828	50504828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5219.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	11.0	92.5	21.5	13.0	24.5	30.0
Merged-chr10-100016176-1	chr10	100015676	100016676	+	1000.0	f0_balb.idr	intron (NM_001347156, intron 1 of 8)	CpG	355.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76571343-2	chr11	76570771	76571771	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_198895, exon 1 of 23)	5' UTR (NM_198895, exon 1 of 23)	113.0	NM_198895	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.0	0.0	1.5	0.0	1.0	3.0
Merged-chr11-120455073-2	chr11	120454573	120455573	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-1573.0	NM_012065	18588.0	Mm.39200	NM_012065	ENSMUSG00000025386	Pde6g	Pdeg|p3AT	phosphodiesterase 6G, cGMP-specific, rod, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135934007-4	chr5	135933501	135934501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018871, intron 1 of 1)	intron (NM_018871, intron 1 of 1)	640.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-24589226-4	chr15	24588701	24589701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	824563.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90583751-4	chr2	90583239	90584239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3092.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34253776-4	chr13	34253246	34254246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	90782.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	7.0	17.0	18.0	3.0	14.5	10.5
Merged-chr9-26999625-4	chr9	26999145	27000145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144543)	promoter-TSS (NM_144543)	-32.0	NM_144543	77862.0	Mm.16925	NM_144543	ENSMUSG00000035443	Thyn1	D730042P09Rik|HSPC144|MDS012|MY105|Thy28	thymocyte nuclear protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34874425-4	chr13	34873921	34874921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1073.0	NM_013830	19134.0	Mm.10027	NM_013830	ENSMUSG00000021413	Prpf4b	2610037H07|Prp4|Prp4k|Prpk|cbp143	pre-mRNA processing factor 4B	protein-coding	9.5	34.5	17.5	12.5	38.5	25.0
Merged-chr13-49307758-4	chr13	49307276	49308276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 1 of 17)	intron (NM_015759, intron 1 of 17)	1432.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-46870253-4	chr12	46869762	46870762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51487.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28050157-4	chr7	28049659	28050659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011874)	promoter-TSS (NM_011874)	-67.0	NM_011874	23996.0	Mm.29582	NM_011874	ENSMUSG00000030603	Psmc4	CIP21|MIP224	proteasome (prosome, macropain) 26S subunit, ATPase, 4	protein-coding	12.5	44.5	9.5	9.0	41.5	23.0
Merged-chr15-58141381-4	chr15	58140877	58141877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001326599)	promoter-TSS (NM_001326599)	11.0	NM_001326599	76773.0	Mm.26771	NM_029734	ENSMUSG00000022359	Wdyhv1	2410187C16Rik|AU014961|AW550036|Ntaq1	WDYHV motif containing 1	protein-coding	42.5	142.5	85.5	57.0	186.5	147.5
Merged-chr3-84040128-8	chr3	84039638	84040638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172681)	promoter-TSS (NM_172681)	23.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27308627-4	chr2	27308114	27309114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 3 of 29)	MTE2a|LTR|ERVL-MaLR	-61311.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112280350-4	chr5	112279824	112280824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	MIR3|SINE|MIR	3633.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	21.5	76.0	28.0	24.5	59.5	25.5
Merged-chr6-129474718-4	chr6	129474236	129475236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1957.0	NR_132130	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.0	6.0	5.5	2.5	3.0	0.5
Merged-chr11-109470316-4	chr11	109469824	109470824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029842, intron 1 of 5)	intron (NM_001029842, intron 1 of 5)	2905.0	NM_134038	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	14.0	29.0	20.0	18.5	13.5	5.5
Merged-chr5-137624246-4	chr5	137623733	137624733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027708, exon 3 of 10)	exon (NM_027708, exon 3 of 10)	845.0	NM_027708	71176.0	Mm.474695	NM_027708	ENSMUSG00000089984	Fbxo24	4933422D21Rik|Fbx24	F-box protein 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43092497-7	chr1	43091995	43092995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357299)	promoter-TSS (NM_001357299)	-9.0	NM_001357299	73122.0	Mm.246069	NM_001013025	ENSMUSG00000070939	Tgfbrap1	3110018K12Rik|AU024090|AU042859|AW742551|Trap1	transforming growth factor, beta receptor associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121793707-4	chr11	121793214	121794214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-36504.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45025223-2	chr2	45024723	45025723	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-2046.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52062110-4	chr13	52061598	52062598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-34643.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46751613-4	chr17	46751115	46752115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028065, intron 1 of 5)	intron (NM_028065, intron 1 of 5)	599.0	NM_001305989	72029.0	Mm.240325	NM_028065	ENSMUSG00000023973	Cnpy3	1600025D17Rik|2410050O22Rik|AI413153|CAG4A|ERDA5|PRAT4A|Tnrc5	canopy FGF signaling regulator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-105640413-4	chr7	105639919	105640919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029802)	promoter-TSS (NM_029802)	-3.0	NM_029802	76932.0	Mm.41637	NM_029802	ENSMUSG00000030881	Arfip2	2310002N04Rik|POR|Por1	ADP-ribosylation factor interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138550412-4	chr1	138549927	138550927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 2 of 9)	RLTR26_Mus|LTR|ERVK	69330.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73553588-4	chr2	73553085	73554085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24098.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8634979-4	chr15	8634479	8635479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_148938, exon 10 of 10)	3' UTR (NM_148938, exon 10 of 10)	75828.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116557082-4	chr4	116556580	116557580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029868)	promoter-TSS (NM_029868)	-647.0	NM_029868	77110.0	Mm.41715	NM_029868	ENSMUSG00000034042	Gpbp1l1	5330440M15Rik|BC002292	GC-rich promoter binding protein 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80695174-2	chr18	80694674	80695674	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 2 of 9)	intron (NM_198429, intron 2 of 9)	12999.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0.0	2.0	0.0	0.0	1.0	7.0
Merged-chr3-148221051-4	chr3	148220532	148221532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	733603.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	1.0	0.0	9.5	11.5	7.0	21.0
Merged-chr4-155669473-6	chr4	155668928	155669928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256107)	promoter-TSS (NM_001256107)	-174.0	NM_001256107	76580.0	Mm.235738	NM_145124	ENSMUSG00000029060	Mib2	2210008I11Rik|Zzank1|skd	mindbomb E3 ubiquitin protein ligase 2	protein-coding	60.5	103.5	65.5	43.0	93.0	49.5
Merged-chr11-48871464-4	chr11	48870986	48871986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008326)	promoter-TSS (NM_008326)	-66.0	NM_008326	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168080826-4	chr2	168080338	168081338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021409)	promoter-TSS (NM_021409)	-166.0	NM_021409	58220.0	Mm.292834	NM_021409	ENSMUSG00000044641	Pard6b	AV025615|Par6b	par-6 family cell polarity regulator beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80005118-4	chr18	80004617	80005617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41778.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	0.5	3.0	5.0	0.5	10.0	3.5
Merged-chr17-46496766-4	chr17	46496253	46497253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207161)	promoter-TSS (NM_207161)	-36.0	NM_207161	381101.0	Mm.35801	NM_207161	ENSMUSG00000040658	Dnph1	C76683|Rcl	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85602922-4	chr12	85602433	85603433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 1 of 3)	MIR|SINE|MIR	2915.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53299858-4	chr11	53299356	53300356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008300, intron 1 of 18)	CpG	623.0	NM_008300	15525.0	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105860510-4	chr8	105860024	105861024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357229)	promoter-TSS (NM_001357229)	-9.0	NM_026532	68051.0	Mm.455474	NM_026532	ENSMUSG00000008450	Nutf2	2700067I02Rik|AI115459|AI413596|AW546000|Ntf2|Ntf3|PP15	nuclear transport factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120807704-2	chr8	120807204	120808204	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69065.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111522205-4	chr8	111521691	111522691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176923)	promoter-TSS (NM_176923)	-84.0	NM_176923	319481.0	Mm.247294	NM_176923	ENSMUSG00000031959	Wdr59	5430401O09Rik|Cdw12	WD repeat domain 59	protein-coding	17.0	51.0	26.0	7.0	53.5	23.0
Merged-chr13-77708686-4	chr13	77708187	77709187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163419)	promoter-TSS (NM_001163419)	-3.0	NM_001163420	68675.0	Mm.343005	NM_138312	ENSMUSG00000064138	Fam172a	1110033M05Rik|2610318O14Rik|53-E6|9430037D06Rik|AF064782|pEN87	family with sequence similarity 172, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93081696-4	chr10	93081246	93082246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347060)	promoter-TSS (NM_001347060)	-150.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	5.5	3.0	2.0	1.0	2.5	4.5
Merged-chr14-19985335-4	chr14	19984872	19985872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8123.0	NM_001285909	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19362783-1	chr7	19362283	19363283	+	1000.0	f1_c57bl6.idr	intron (NM_001010836, intron 1 of 12)	intron (NM_001010836, intron 1 of 12)	1567.0	NM_001010836	333654.0	Mm.333640	NM_001010836	ENSMUSG00000040734	Ppp1r13l	AV260376|IASPP|Nkip1|wa3	protein phosphatase 1, regulatory (inhibitor) subunit 13 like	protein-coding	1.0	4.5	0.0	1.0	0.0	0.0
Merged-chr11-44437963-4	chr11	44437463	44438463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32585.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	95.5	196.5	139.0	34.0	47.0	40.5
Merged-chr15-57695801-7	chr15	57695355	57696355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 1 of 3)	CpG	1188.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26647057-4	chr2	26646564	26647564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6820.0	NR_024068	72091.0	Mm.27103	NR_024068		Snhg7	2610002F03Rik|AI427062	small nucleolar RNA host gene 7	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27427105-4	chr2	27426579	27427579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_133905, exon 1 of 30)	non-coding (NR_133905, exon 1 of 30)	529.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-67581859-2	chr3	67581359	67582359	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025813)	promoter-TSS (NM_025813)	-909.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	8.5	13.0	13.5	3.0	3.0	3.5
Merged-chr6-83413242-5	chr6	83412738	83413738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347313, intron 3 of 11)	intron (NM_001347313, intron 3 of 11)	-12136.0	NR_105793	102465194.0		NR_105793	ENSMUSG00000099045	Mir6374	Gm27292|mmu-mir-6374	microRNA 6374	ncRNA	5.0	46.5	25.0	3.5	14.5	10.5
Merged-chr8-117050956-4	chr8	117050473	117051473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 16 of 42)	intron (NM_029686, intron 16 of 42)	31476.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-138140495-4	chr6	138139988	138140988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019946)	promoter-TSS (NM_019946)	-39.0	NM_001361308	56615.0	Mm.14796	NM_019946	ENSMUSG00000008540	Mgst1	1500002K10Rik|Gst	microsomal glutathione S-transferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8575536-4	chr11	8575060	8576060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	88975.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	47.0	71.0	83.5	45.5	85.5	97.0
Merged-chr16-5011827-4	chr16	5011345	5012345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133185, intron 4 of 10)	intron (NM_133185, intron 4 of 10)	1708.0	NM_133185	66049.0	Mm.27792	NM_133185	ENSMUSG00000022540	Rogdi	0610011C19Rik|AU020118|C76152|Lzf	rogdi homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-122886063-4	chr4	122885590	122886590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358036)	promoter-TSS (NM_001358036)	-14.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	123.0	289.5	201.5	96.0	217.0	238.5
Merged-chr1-71102529-4	chr1	71102020	71103020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007525, intron 1 of 10)	CpG	452.0	NM_007525	12021.0	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	-	BRCA1 associated RING domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98985480-2	chr15	98984980	98985980	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045991)	promoter-TSS (NR_045991)	-485.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21940455-4	chr13	21939953	21940953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4641.0	NM_183014	193452.0	Mm.187446	NM_183014	ENSMUSG00000006720	Zfp184	4930500C15Rik	zinc finger protein 184 (Kruppel-like)	protein-coding	12.0	12.5	7.0	6.5	21.5	8.0
Merged-chr10-53597717-4	chr10	53597211	53598211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025541, intron 1 of 3)	CpG	750.0	NM_025541	66403.0	Mm.272989	NM_025541	ENSMUSG00000019857	Asf1a	2310079C17Rik|C79052	anti-silencing function 1A histone chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50396380-4	chr16	50395860	50396860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 2 of 16)	intron (NM_027444, intron 2 of 16)	36029.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66511844-4	chr9	66511343	66512343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175206, exon 2 of 2)	exon (NM_175206, exon 2 of 2)	2750.0	NM_175206	74165.0	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84217070-1	chr8	84216570	84217570	+	1000.0	f1_balb.idr	intron (NM_172503, intron 12 of 13)	intron (NM_172503, intron 12 of 13)	-8163.0	NR_037294	100526528.0		NR_037294	ENSMUSG00000105458	Mir3074-2	mir-3074-2|mmu-mir-3074-2	microRNA 3074-2	ncRNA	6.5	21.5	5.0	18.5	34.0	8.5
Merged-chr14-19417855-4	chr14	19417361	19418361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	184726.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156203282-2	chr2	156202790	156203790	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172674, intron 1 of 17)	intron (NM_172674, intron 1 of 17)	6643.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	0.0	5.5	11.0	0.0	7.5	4.5
Merged-chr6-37732524-4	chr6	37732010	37733010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138301.0	NM_001272064	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107922982-2	chr4	107922482	107923482	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009949, intron 1 of 4)	B1_Mur3|SINE|Alu	607.0	NM_009949	12896.0	Mm.307620	NM_009949	ENSMUSG00000028607	Cpt2	AI323697|CPTII	carnitine palmitoyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97838426-4	chr11	97837928	97838928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010688, exon 7 of 7)	3' UTR (NM_010688, exon 7 of 7)	-2352.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	0.0	26.5	18.0	0.0	25.0	18.5
Merged-chr9-21135704-4	chr9	21135192	21136192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4417.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-38107651-4	chr7	38107141	38108141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007633)	promoter-TSS (NM_007633)	-151.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	104.0	168.0	197.0	54.0	122.5	141.0
Merged-chr10-80679413-2	chr10	80678913	80679913	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3120.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46460885-2	chr11	46460385	46461385	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134250, intron 3 of 6)	intron (NM_134250, intron 3 of 6)	5954.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	8.0	12.0	12.0	5.5	13.5	9.5
Merged-chr13-19395304-4	chr13	19394799	19395799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347485, intron 1 of 7)	(A)n|Simple_repeat|Simple_repeat	514.0	NM_024270	76205.0	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133690442-4	chr4	133689926	133690926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080819, intron 11 of 19)	intron (NM_001080819, intron 11 of 19)	-17260.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	7.0	5.5	6.5	13.0	10.0	10.0
Merged-chr13-100730993-4	chr13	100730484	100731484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009874)	promoter-TSS (NM_009874)	-42.0	NM_009874	12572.0	Mm.259718	NM_009874	ENSMUSG00000069089	Cdk7	AI323415|AI528512|C230069N13|Cdkn7|Crk4	cyclin-dependent kinase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40700453-4	chr4	40699932	40700932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025444, intron 1 of 7)	intron (NM_001025444, intron 1 of 7)	2484.0	NM_025545	66408.0	Mm.430710	NM_025545	ENSMUSG00000028411	Aptx	2410016G21Rik|AA388047|FHA-HIT	aprataxin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127922546-4	chr7	127922038	127923038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360699, intron 6 of 10)	intron (NM_001360699, intron 6 of 10)	7575.0	NM_133351	76560.0	Mm.5875	NM_133351	ENSMUSG00000030800	Prss8	2410039E18Rik|AI313909|C79772|CAP1|fr|mCAP1	protease, serine 8 (prostasin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-53195041-4	chr5	53194556	53195556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172710, intron 2 of 23)	MIR3|SINE|MIR	18396.0	NM_172710	231238.0	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135885912-4	chr4	135885402	135886402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9287.0	NM_009924	12802.0	Mm.297251	NM_009924	ENSMUSG00000062585	Cnr2	CB-2|CB2|CB2-R	cannabinoid receptor 2 (macrophage)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78178045-4	chr11	78177557	78178557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106113)	promoter-TSS (NR_106113)	-92.0	NM_001291235	68385.0	Mm.390375	NM_026708	ENSMUSG00000019437	Tlcd1	-	TLC domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34934981-4	chr17	34934481	34935481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010893, exon 6 of 6)	3' UTR (NM_010893, exon 6 of 6)	3728.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-100381291-4	chr6	100380783	100381783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93925.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34220876-4	chr18	34220325	34221325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007462)	promoter-TSS (NM_007462)	-159.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	7.5	33.5	55.5	35.0	72.0	76.0
Merged-chr15-59809495-4	chr15	59808974	59809974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14515.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	170.5	350.0	269.5	117.5	279.0	241.0
Merged-chr4-138913986-4	chr4	138913477	138914477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028453)	promoter-TSS (NM_028453)	-30.0	NM_028453	73162.0	Mm.238081	NM_028453	ENSMUSG00000041161	Otud3	3110030K17Rik	OTU domain containing 3	protein-coding	5.5	14.5	21.5	12.5	4.5	2.0
Merged-chr9-57158277-4	chr9	57157786	57158786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025417)	promoter-TSS (NM_025417)	13.0	NM_025417	66199.0	Mm.41687	NM_025417	ENSMUSG00000032299	Commd4	1110039H05Rik	COMM domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101765103-4	chr5	101764577	101765577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173370)	promoter-TSS (NM_173370)	-53.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-150118564-4	chr5	150118068	150119068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	99893.0	NM_001289566	140498.0	Mm.444643	NM_080468	ENSMUSG00000053368	Rxfp2	Gpr106|Great|Lgr8	relaxin/insulin-like family peptide receptor 2	protein-coding	13.0	4.0	4.0	16.0	4.0	4.5
Merged-chr17-13660101-4	chr17	13659583	13660583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-100458.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	12.5	45.0	25.0	6.0	53.0	36.5
Merged-chr15-5144245-2	chr15	5143745	5144745	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013367, intron 1 of 8)	intron (NM_001013367, intron 1 of 8)	384.0	NM_001355640	105787.0	Mm.207004	NM_001013367	ENSMUSG00000050697	Prkaa1	AI194361|AI450832|AL024255|AMPKalpha1|C130083N04Rik	protein kinase, AMP-activated, alpha 1 catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-104687477-4	chr2	104687004	104688004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177190, intron 7 of 9)	intron (NM_177190, intron 7 of 9)	24658.0	NM_177190	320554.0	Mm.249065	NM_177190	ENSMUSG00000027175	Tcp11l1	C130096D04Rik	t-complex 11 like 1	protein-coding	7.0	24.0	9.5	4.0	22.0	6.0
Merged-chr15-78257911-4	chr15	78257364	78258364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008677, intron 7 of 9)	intron (NM_008677, intron 7 of 9)	13053.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	329.0	706.5	435.0	325.0	678.5	484.0
Merged-chr2-124609909-2	chr2	124609409	124610409	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172537)	promoter-TSS (NM_172537)	-387.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111159959-4	chr10	111159468	111160468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1-int|LTR|ERVL-MaLR	-4834.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	8.5	18.0	9.0	18.5	42.0	22.0
Merged-chr7-140953912-4	chr7	140953413	140954413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030694)	TTS (NM_030694)	2048.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152477620-4	chr4	152477158	152478158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355173)	promoter-TSS (NM_001355173)	-80.0	NM_001355739	260305.0	Mm.302496	NM_153424	ENSMUSG00000039577	Nphp4	4930564O18Rik|nmf192	nephronophthisis 4 (juvenile) homolog (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-89848770-4	chr16	89848277	89849277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 12 of 27)	intron (NM_009384, intron 12 of 27)	-30425.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95232140-2	chr11	95231640	95232640	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29389.0	NM_053093	93670.0	Mm.40085	NM_053093	ENSMUSG00000020872	Tac4	AW489379|PPT-C	tachykinin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14889379-3	chr8	14888877	14889877	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012000, intron 1 of 2)	intron (NM_012000, intron 1 of 2)	841.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	45.0	104.5	60.5	29.0	99.5	75.5
Merged-chr14-61774380-4	chr14	61773877	61774877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92004.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	6.5	4.0	9.5	2.5	14.5	11.5
Merged-chr10-59237886-4	chr10	59237383	59238383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	15961.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61960986-4	chr9	61960493	61961493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 7 of 7)	MER5A|DNA|hAT-Charlie	-14194.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117198309-4	chr8	117197821	117198821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081151, intron 9 of 10)	intron (NM_001081151, intron 9 of 10)	40186.0	NM_001081151	209239.0	Mm.132992	NM_001081151	ENSMUSG00000052557	Gan	A330045G18|gigaxonin	giant axonal neuropathy	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127182994-4	chr2	127182492	127183492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25288.0	NM_198630	329509.0	Mm.120738	NM_198630	ENSMUSG00000044145	1810024B03Rik	-	RIKEN cDNA 1810024B03 gene	protein-coding	79.0	158.5	134.0	25.5	47.0	46.0
Merged-chr1-39577497-4	chr1	39576996	39577996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033135)	promoter-TSS (NM_001033135)	-149.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114699170-4	chr5	114698656	114699656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER54A|LTR|ERVL	-8221.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	72.0	199.5	150.0	40.0	105.5	95.0
Merged-chr1-120517755-4	chr1	120517260	120518260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12736.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	1.5	12.5	7.0	9.5	5.0	2.5
Merged-chr7-43614440-4	chr7	43613906	43614906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355131, intron 3 of 3)	intron (NM_001355131, intron 3 of 3)	7237.0	NM_028913	74400.0	Mm.159188	NM_028913	ENSMUSG00000055102	Zfp819	4930427I11Rik|4933405K07Rik	zinc finger protein 819	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75254702-4	chr11	75254201	75255201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177708, intron 1 of 1)	intron (NM_177708, intron 1 of 1)	60708.0	NM_177708	237847.0	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	56.0	120.5	99.5	53.5	118.0	90.0
Merged-chr13-63877298-4	chr13	63876792	63877792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013608, intron 16 of 18)	intron (NM_001013608, intron 16 of 18)	62052.0	NM_023507	76251.0	Mm.186610	NM_023507	ENSMUSG00000021470	Ercc6l2	0610007P08Rik|1700019D06Rik|9330134C04Rik|Rad26l|Sr278	excision repair cross-complementing rodent repair deficiency, complementation group 6 like 2	protein-coding	4.0	24.5	14.0	9.5	2.0	9.5
Merged-chr8-54530086-4	chr8	54529591	54530591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029701)	promoter-TSS (NM_029701)	-93.0	NM_029701	76687.0	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik|SPC22/23	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70477042-4	chr8	70476578	70477578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122830)	promoter-TSS (NM_001122830)	-135.0	NM_178771	234378.0	Mm.187090	NM_172052	ENSMUSG00000055707	Klhl26	C630013N10Rik|Klkl26	kelch-like 26	protein-coding	1.5	2.5	7.5	4.0	4.0	3.0
Merged-chr17-74431711-4	chr17	74431191	74432191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 8 of 8)	MTE2b|LTR|ERVL-MaLR	27417.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11758875-2	chr8	11758375	11759375	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_017402, intron 1 of 19)	intron (NM_017402, intron 1 of 19)	545.0	NM_001113518	54126.0	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141419565-4	chr4	141419056	141420056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1223.0	NM_013868	29818.0	Mm.46181	NM_013868	ENSMUSG00000006221	Hspb7	27kDa|Hsp25-2|cvHsp	heat shock protein family, member 7 (cardiovascular)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122923085-4	chr8	122922562	122923562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	74688.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	23.5	54.5	14.5	19.5	38.0	24.5
Merged-chr2-119897528-3	chr2	119897026	119898026	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013720, intron 1 of 23)	CpG	298.0	NM_013720	29808.0	Mm.87532	NM_013720	ENSMUSG00000033943	Mga	AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5	MAX gene associated	protein-coding	34.0	66.5	46.5	45.0	136.5	101.5
Merged-chr3-104866012-2	chr3	104865512	104866512	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045578, intron 1 of 13)	intron (NR_045578, intron 1 of 13)	1506.0	NM_001253702	229681.0	Mm.206379	NM_153091	ENSMUSG00000045576	St7l	St7r	suppression of tumorigenicity 7-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107452295-2	chr11	107451795	107452795	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	Lx7|LINE|L1	18425.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35117717-4	chr12	35117207	35118207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014973, intron 17 of 25)	intron (NM_001014973, intron 17 of 25)	70518.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	0.5	9.5	9.5	18.0	14.0	19.5
Merged-chr17-87973843-2	chr17	87973343	87974343	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1207.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150281538-4	chr4	150281025	150282025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085492)	promoter-TSS (NM_001085492)	-391.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131963834-4	chr1	131963335	131964335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177628, intron 1 of 4)	intron (NM_001177628, intron 1 of 4)	920.0	NM_001177628	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	20.5	5.0	9.5	10.0	16.0	8.5
Merged-chr3-95660386-2	chr3	95659886	95660886	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008562, intron 2 of 2)	intron (NM_008562, intron 2 of 2)	1665.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-68363409-4	chr15	68362919	68363919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22130.0	NR_029718	387228.0		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	4.0	14.5	8.5	0.0	11.0	1.5
Merged-chr14-55579645-2	chr14	55579145	55580145	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011189, intron 2 of 10)	intron (NM_011189, intron 2 of 10)	1151.0	NM_011189	19186.0	Mm.830	NM_011189	ENSMUSG00000022216	Psme1	AW413925|PA28a	proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-92561334-8	chr7	92560838	92561838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001162918, exon 1 of 8)	5' UTR (NM_001162918, exon 1 of 8)	189.0	NM_001162918	66365.0	Mm.21173	NM_025515	ENSMUSG00000030613	Ccdc90b	2310015N07Rik|C86558	coiled-coil domain containing 90B	protein-coding	3.5	24.5	12.5	2.0	32.0	26.0
Merged-chr3-126696767-4	chr3	126696293	126697293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 3 of 18)	intron (NM_001025438, intron 3 of 18)	99842.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	9.0	31.5	19.0	16.5	32.5	12.0
Merged-chr11-72207504-4	chr11	72207000	72208000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026559)	promoter-TSS (NM_026559)	-18.0	NR_155066	74477.0	Mm.289697	NM_028963	ENSMUSG00000020807	4933427D14Rik	C85113|Kiaa0753|MNR	RIKEN cDNA 4933427D14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-35559265-4	chr15	35558777	35559777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177151, intron 19 of 61)	intron (NM_177151, intron 19 of 61)	101641.0	NR_035527	100316736.0		NR_035527	ENSMUSG00000076333	Mir599	mmu-mir-599	microRNA 599	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126666655-4	chr8	126666107	126667107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73171.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29007422-4	chr7	29006935	29007935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009109, intron 101 of 105)	intron (NM_009109, intron 101 of 105)	24581.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	0.0	6.0	0.5	3.5	10.0	12.0
Merged-chr5-76906055-4	chr5	76905547	76906547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173765)	promoter-TSS (NM_173765)	-533.0	NM_173765	231326.0	Mm.39271	NM_173765	ENSMUSG00000055923	Aasdh	A230062G08Rik|A830035E16|Acsf4|U26	aminoadipate-semialdehyde dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5895413-4	chr2	5894895	5895895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356411)	promoter-TSS (NM_001356411)	37.0	NM_021305	57743.0	Mm.21435	NM_021305	ENSMUSG00000025816	Sec61a2	-	Sec61, alpha subunit 2 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69390030-2	chr11	69389530	69390530	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5316.0	NM_001045525	327951.0	Mm.415669	NM_001045525	ENSMUSG00000044795	Cyb5d1	Gm740	cytochrome b5 domain containing 1	protein-coding	0.0	6.0	0.0	0.0	0.0	6.0
Merged-chr5-91962379-4	chr5	91961893	91962893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028429)	promoter-TSS (NR_028429)	163.0	NR_073442	68098.0	Mm.159453	NM_026557	ENSMUSG00000029397	Rchy1	ARNIP|CHIMP|Pirh2|Zfp363|Znf363	ring finger and CHY zinc finger domain containing 1	protein-coding	44.5	65.0	45.0	48.0	64.0	46.0
Merged-chr5-117319190-4	chr5	117318694	117319694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033311)	promoter-TSS (NM_001033311)	-72.0	NM_001033311	231668.0	Mm.298603	NM_001033311	ENSMUSG00000066894	Vsig10	-	V-set and immunoglobulin domain containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118649642-4	chr9	118649137	118650137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	42928.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	31.5	62.0	47.0	31.5	63.0	42.5
Merged-chr13-56611319-4	chr13	56610817	56611817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155548, intron 1 of 16)	intron (NR_155548, intron 1 of 16)	1731.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122777219-2	chr5	122776719	122777719	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199676, intron 1 of 16)	intron (NM_001199676, intron 1 of 16)	2191.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-67715864-4	chr14	67715342	67716342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110162)	promoter-TSS (NM_001110162)	-1.0	NM_175384	108912.0	Mm.33831	NM_175384	ENSMUSG00000048922	Cdca2	2610311M19Rik|AI586158	cell division cycle associated 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76287935-4	chr14	76287436	76288436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36474.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6084986-4	chr19	6084468	6085468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026410)	promoter-TSS (NM_026410)	7.0	NM_001356994	81909.0	Mm.289471	NM_024231	ENSMUSG00000024792	Zfpl1	-	zinc finger like protein 1	protein-coding	14.0	24.0	17.0	6.5	24.0	36.0
Merged-chr18-6490066-4	chr18	6489562	6490562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_035446)	TTS (NR_035446)	584.0	NR_035446	100316773.0		NR_035446	ENSMUSG00000084514	Mir1893	Mirn1893|mmu-mir-1893	microRNA 1893	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118617486-4	chr9	118617007	118618007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	RLTR11C_MM|LTR|ERVK	10798.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-57114971-4	chr2	57114479	57115479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013613)	promoter-TSS (NM_013613)	59.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31176551-4	chr6	31176047	31177047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	41927.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110424365-4	chr5	110423852	110424852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142642, intron 2 of 18)	intron (NM_001142642, intron 2 of 18)	24151.0	NM_001317042	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	10.0	17.0	8.0	0.5	10.0	7.0
Merged-chr4-59003175-4	chr4	59002685	59003685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033165)	promoter-TSS (NM_001033165)	-8.0	NM_001033165	72429.0	Mm.317801	NM_001033165	ENSMUSG00000070972	Dnajc25	2010109C08Rik|2010203O07Rik	DnaJ heat shock protein family (Hsp40) member C25	protein-coding	1.0	11.0	1.0	0.0	6.0	2.5
Merged-chr13-17944270-4	chr13	17943772	17944772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019491)	promoter-TSS (NM_019491)	-55.0	NM_019491	56044.0	Mm.27348	NM_019491	ENSMUSG00000008859	Rala	3010001O15Rik|AW322615|Ral|Rasl1	v-ral simian leukemia viral oncogene A (ras related)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-83812104-2	chr12	83811604	83812604	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001272055, intron 2 of 8)	B3|SINE|B2	30254.0	NM_001272055	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87488071-1	chr6	87487571	87488571	+	1000.0	f1_c57bl6.idr	intron (NM_001037727, intron 4 of 10)	intron (NM_001037727, intron 4 of 10)	8256.0	NR_104483	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	7.5	26.5	10.0	0.5	5.5	9.0
Merged-chr10-117906637-4	chr10	117906066	117907066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18893.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	155.5	368.5	294.0	147.0	333.0	283.5
Merged-chr4-151933632-4	chr4	151933111	151934111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172704)	promoter-TSS (NM_172704)	-109.0	NM_172704	230935.0	Mm.21353	NM_172704	ENSMUSG00000039768	Dnajc11	E030019A03Rik	DnaJ heat shock protein family (Hsp40) member C11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75775399-4	chr2	75774893	75775893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56784.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	35.0	114.5	56.0	20.5	42.0	53.0
Merged-chr3-97227728-4	chr3	97227212	97228212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029933)	promoter-TSS (NM_029933)	-348.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120532712-4	chr1	120532194	120533194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27670.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	19.5	16.0	13.0	13.5	23.0	11.0
Merged-chr9-119895447-4	chr9	119894932	119895932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026236, intron 1 of 18)	CpG	537.0	NM_026236	67561.0	Mm.104789	NM_026236	ENSMUSG00000032512	Wdr48	8430408H12Rik|Uaf1|mKIAA1449	WD repeat domain 48	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-5368931-4	chr5	5368408	5369408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	11343.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	8.0	21.5	23.5	3.5	13.0	17.5
Merged-chr1-55215630-4	chr1	55215135	55216135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028713, intron 1 of 8)	intron (NM_028713, intron 1 of 8)	11147.0	NM_001356288	74013.0	Mm.292050	NM_028713	ENSMUSG00000025978	Rftn2	2700010E02Rik|3222401M22Rik	raftlin family member 2	protein-coding	7.0	32.5	14.0	12.0	32.5	16.0
Merged-chr14-20695172-7	chr14	20694681	20695681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001168273)	TTS (NM_001168273)	213.0	NM_028428	73068.0	Mm.277552	NM_028428	ENSMUSG00000039357	Fut11	3110009G03Rik|AI317183	fucosyltransferase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29217508-2	chr6	29217008	29218008	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1144.0	NM_001302934	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73942733-4	chr17	73942231	73943231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 2 of 35)	intron (NM_011723, intron 2 of 35)	7465.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70803047-4	chr11	70802539	70803539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045526, intron 1 of 4)	MLT1D|LTR|ERVL-MaLR	9522.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	18.5	66.0	63.0	31.0	91.5	52.0
Merged-chr9-59353415-4	chr9	59352900	59353900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153195, intron 1 of 15)	CpG	108.0	NM_001359558	102774.0	Mm.200714	NM_175325	ENSMUSG00000025235	Bbs4	AW537059|AW742241|D9Ertd464e	Bardet-Biedl syndrome 4 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23280648-4	chr16	23280168	23281168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	L3|LINE|CR1	-9802.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-133497979-4	chr2	133497471	133498471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54188.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167757598-2	chr2	167757098	167758098	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66421.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111052379-4	chr8	111051865	111052865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146217, intron 15 of 20)	intron (NM_146217, intron 15 of 20)	-3974.0	NM_028274	72544.0	Mm.24174	NM_028274	ENSMUSG00000109941	Exosc6	2610510N21Rik|C76919|Mtr3	exosome component 6	protein-coding	53.0	200.0	125.5	60.5	136.0	127.5
Merged-chr11-72608487-4	chr11	72607990	72608990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025985, intron 1 of 5)	CpG	1229.0	NM_025985	67128.0	Mm.458052	NM_025985	ENSMUSG00000020794	Ube2g1	2700059C12Rik|AI256795|AU014992|AW552068|D130023C12Rik	ubiquitin-conjugating enzyme E2G 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-99666794-4	chr6	99666290	99667290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025829)	promoter-TSS (NM_025829)	-19.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108985072-4	chr8	108984560	108985560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48200.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135876084-4	chr4	135875577	135876577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-2231.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-55539501-2	chr9	55539001	55540001	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-1648.0	NM_027397	104360.0	Mm.273996	NM_027397	ENSMUSG00000032318	Isl2	3110001N10Rik	insulin related protein 2 (islet 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115514463-4	chr11	115513968	115514968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008258)	promoter-TSS (NM_008258)	-75.0	NM_008258	15374.0	Mm.1775	NM_008258	ENSMUSG00000020737	Jpt1	Hn1	Jupiter microtubule associated homolog 1	protein-coding	28.0	24.5	28.5	10.5	44.5	34.5
Merged-chr7-45715343-4	chr7	45714836	45715836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020011)	promoter-TSS (NM_020011)	-129.0	NM_020011	56632.0	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	21.5	50.5	44.0	24.0	67.5	69.0
Merged-chr3-137869607-4	chr3	137869098	137870098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033155, intron 1 of 7)	L1MB2|LINE|L1	1923.0	NM_001033155	70604.0	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	11.0	31.0	28.5	7.0	41.0	13.0
Merged-chr2-130424830-4	chr2	130424326	130425326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001114541)	promoter-TSS (NM_001114541)	-185.0	NM_001114541	319513.0	Mm.482539	NM_178762	ENSMUSG00000037773	Pced1a	A930025D01Rik|AI480484|Fam113a	PC-esterase domain containing 1A	protein-coding	155.5	345.5	289.5	173.0	343.0	245.0
Merged-chr17-80008995-4	chr17	80008479	80009479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53289.0	NR_152119	72692.0	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46152489-4	chr8	46151984	46152984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11167.0	NM_025747	66756.0	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430	cilia and flagella associated protein 97	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43675375-1	chr19	43674875	43675875	+	1000.0	f0_c57.idr	promoter-TSS (NM_145156)	promoter-TSS (NM_145156)	197.0	NR_045645	100502982.0	Mm.313570	NR_045645		BC037704	-	cDNA sequence BC037704	ncRNA	23.0	90.5	30.5	12.5	50.5	49.0
Merged-chr11-98959664-4	chr11	98959174	98960174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001176528)	promoter-TSS (NM_001176528)	-797.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191352921-2	chr1	191352421	191353421	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025864)	TTS (NM_025864)	26956.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81384308-4	chr10	81383813	81384813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133964)	promoter-TSS (NM_133964)	-115.0	NM_133964	102115.0	Mm.294975	NM_133964	ENSMUSG00000078440	Dohh	1110033C18Rik|AI585913|AL022869|Hlrc1	deoxyhypusine hydroxylase/monooxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-121506659-4	chr2	121506148	121507148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030234)	promoter-TSS (NM_030234)	8.0	NM_026220	67532.0	Mm.440764	NM_026220	ENSMUSG00000068479	Mfap1a	4432409M24Rik|Mfap1	microfibrillar-associated protein 1A	protein-coding	3.5	6.5	10.0	3.5	2.0	4.0
Merged-chr11-34036511-4	chr11	34035999	34036999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-10429.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	5.5	2.0	5.5	5.5	2.0	4.5
Merged-chr15-58876352-4	chr15	58875824	58876824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026642, exon 1 of 1)	3' UTR (NM_026642, exon 1 of 1)	3675.0	NM_026642	68260.0	Mm.278805	NM_026642	ENSMUSG00000037085	Trmt12	4632406N01Rik|AI449275|Tyw2	tRNA methyltranferase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-51689723-4	chr15	51689225	51690225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	175736.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	13.0	42.0	17.5	20.5	50.5	33.5
Merged-chr11-108343960-4	chr11	108343485	108344485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011101)	promoter-TSS (NM_011101)	-97.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115427592-4	chr8	115427102	115428102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	279292.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128129441-4	chr7	128128944	128129944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021334)	promoter-TSS (NM_021334)	-124.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	22.0	42.5	43.0	23.0	38.0	31.5
Merged-chr17-56585338-4	chr17	56584820	56585820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355463)	promoter-TSS (NM_001355463)	338.0	NM_001163300	224903.0	Mm.255066	NM_001163300	ENSMUSG00000071054	Safb	3110021E02Rik|5330423C17Rik|AU018122|D18386|E130307D12|HAP|HET|SAF-B1|SAFB1	scaffold attachment factor B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-140941870-4	chr7	140941359	140942359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153832, intron 1 of 11)	intron (NR_153832, intron 1 of 11)	468.0	NM_145387	212974.0	Mm.260139	NM_145387	ENSMUSG00000062031	Pgghg	5730511L01Rik|Athl1|BC023151	protein glucosylgalactosylhydroxylysine glucosidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-73490901-4	chr5	73490408	73491408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190733)	promoter-TSS (NM_001190733)	-118.0	NM_001190733	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	0.0	5.0	1.5	0.0	2.5	0.5
Merged-chr11-46120332-4	chr11	46119848	46120848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291891, intron 8 of 22)	intron (NM_001291891, intron 8 of 22)	-7556.0	NM_001311209	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79930245-2	chr10	79929745	79930745	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001288625, intron 1 of 8)	intron (NM_001288625, intron 1 of 8)	2904.0	NM_001288625	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46851224-2	chr8	46850724	46851724	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111479.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-28269896-4	chr5	28269401	28270401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-24113.0	NM_001310512	269637.0	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-8470768-4	chr16	8470275	8471275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146247)	promoter-TSS (NM_146247)	-38.0	NM_146247	239706.0	Mm.214953	NM_146247	ENSMUSG00000039345	Mettl22	-	methyltransferase like 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32267658-4	chr11	32267163	32268163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104306)	promoter-TSS (NR_104306)	44.0	NM_181569	17168.0	Mm.263161	NM_181569	ENSMUSG00000020289	Nprl3	Aag|CGTHBA|HS-26|HS-40|Mare|Phg|Prox1|m(alpha)RE	nitrogen permease regulator-like 3	protein-coding	7.5	21.0	18.0	12.0	58.5	25.0
Merged-chr12-24498659-4	chr12	24498096	24499096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028341)	promoter-TSS (NR_028341)	15.0	NR_028341	21340.0	Mm.39082	NM_020614	ENSMUSG00000059669	Taf1b	4930408G01Rik|A230108M10Rik|TAFI68|Tafi86|p63	TATA-box binding protein associated factor, RNA polymerase I, B	protein-coding	53.5	113.0	140.0	32.5	110.5	109.0
Merged-chr18-82692333-4	chr18	82691859	82692859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177832, intron 1 of 29)	CpG	375.0	NM_177832	329002.0	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77936104-4	chr9	77935609	77936609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134255, intron 1 of 7)	intron (NM_134255, intron 1 of 7)	18744.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	11.0	10.0	15.0	4.5	10.5	7.0
Merged-chr4-133756868-4	chr4	133756360	133757360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3249.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	10.5	38.0	28.5	11.5	21.5	27.0
Merged-chr3-94482982-4	chr3	94482487	94483487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110353, intron 1 of 11)	intron (NR_110353, intron 1 of 11)	265.0	NR_110353	78784.0	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|ETR-1|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-57578528-4	chr18	57578009	57579009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029290, intron 3 of 6)	intron (NM_029290, intron 3 of 6)	-26112.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87151064-1	chr3	87150564	87151564	+	1000.0	f1_c57bl6.idr	intron (NM_001170985, intron 1 of 15)	intron (NM_001170985, intron 1 of 15)	23683.0	NM_001170985	170643.0	Mm.89552	NM_130867	ENSMUSG00000041734	Kirrel	6720469N11Rik|Kirrel1|Neph1	kirre like nephrin family adhesion molecule 1	protein-coding	0.0	0.0	0.5	4.0	5.5	0.0
Merged-chr15-38299282-4	chr15	38298760	38299760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013692, intron 1 of 3)	CpG	640.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-38037194-4	chr13	38036700	38037700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027724)	promoter-TSS (NM_027724)	211.0	NM_024242	71340.0	Mm.297130	NM_024242	ENSMUSG00000021428	Riok1	3110046C13Rik|5430416A05Rik|Ad034	RIO kinase 1	protein-coding	47.5	91.5	75.5	73.5	113.5	70.0
Merged-chr2-104028755-2	chr2	104028255	104029255	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175161)	promoter-TSS (NM_175161)	-394.0	NM_175161	70986.0	Mm.460738	NM_175161		4931422A03Rik	-	RIKEN cDNA 4931422A03 gene	protein-coding	8.0	5.5	1.5	12.5	1.5	5.0
Merged-chr3-148959511-4	chr3	148959019	148960019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4884.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	14.0	12.5	15.5	9.0	16.5	14.0
Merged-chr14-25694074-4	chr14	25693562	25694562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134084)	promoter-TSS (NM_134084)	-108.0	NM_134084	105675.0	Mm.41656	NM_134084	ENSMUSG00000021868	Ppif	AW457192|CyP-D|CyP-F|CypD|PPIase	peptidylprolyl isomerase F (cyclophilin F)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20897143-2	chr18	20896643	20897643	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1065.0	NM_177038	75964.0	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5809806-2	chr19	5809306	5810306	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-7134.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135690919-4	chr3	135690416	135691416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 1 of 24)	CpG	631.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20403454-4	chr16	20402954	20403954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176839, intron 5 of 6)	intron (NM_176839, intron 5 of 6)	22940.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-125436509-2	chr1	125436009	125437009	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205385)	promoter-TSS (NM_001205385)	-782.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33718784-4	chr17	33718281	33719281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145486)	promoter-TSS (NM_145486)	-104.0	NR_045522	224703.0	Mm.311439	NM_145486	ENSMUSG00000079557	March2	9530046H09Rik|MARCH-II	membrane-associated ring finger (C3HC4) 2	protein-coding	0.0	2.0	0.0	1.0	0.0	6.0
Merged-chr10-69252555-3	chr10	69252058	69253058	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252637, intron 4 of 10)	intron (NM_001252637, intron 4 of 10)	39364.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-83744507-4	chr2	83743996	83744996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008402, intron 2 of 29)	intron (NM_008402, intron 2 of 29)	20099.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	1.0	8.5	10.0	5.5	0.0	4.0
Merged-chr7-48959003-4	chr7	48958501	48959501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111016)	promoter-TSS (NM_001111016)	-72.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3906352-2	chr19	3905852	3906852	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136091, intron 1 of 19)	intron (NM_001136091, intron 1 of 19)	631.0	NM_001167784	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48230883-4	chr17	48230370	48231370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER54A|LTR|ERVL	-1869.0	NM_001347399	58217.0	Mm.248352	NM_021406	ENSMUSG00000042265	Trem1	-	triggering receptor expressed on myeloid cells 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64305709-4	chr1	64305177	64306177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-184288.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171370047-4	chr1	171369550	171370550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027893)	promoter-TSS (NM_027893)	-123.0	NM_027893	71740.0	Mm.263414	NM_027893	ENSMUSG00000006411	Nectin4	1200017F15Rik|Prr4|Pvrl4	nectin cell adhesion molecule 4	protein-coding	32.5	57.5	32.5	23.5	49.5	46.5
Merged-chr9-110645363-4	chr9	110644877	110645877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183276, intron 1 of 53)	intron (NM_183276, intron 1 of 53)	8784.0	NM_183276	235627.0	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35903174-4	chr16	35902691	35903691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31809.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	22.5	76.0	41.5	17.0	87.5	44.0
Merged-chr14-67007666-4	chr14	67007182	67008182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009761, intron 1 of 5)	intron (NM_009761, intron 1 of 5)	1195.0	NM_009761	12177.0	Mm.29820	NM_009761	ENSMUSG00000022051	Bnip3l	C86132|D14Ertd719e|Nip3L|Nix	BCL2/adenovirus E1B interacting protein 3-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118111785-4	chr2	118111259	118112259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011580)	promoter-TSS (NM_011580)	-117.0	NM_011580	21825.0	Mm.4159	NM_011580	ENSMUSG00000040152	Thbs1	TSP-1|TSP1|Thbs-1|tbsp1	thrombospondin 1	protein-coding	0.0	0.0	5.5	0.0	0.0	0.0
Merged-chr9-119340008-4	chr9	119339516	119340516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010851)	promoter-TSS (NM_010851)	24.0	NM_010851	17874.0	Mm.213003	NM_010851	ENSMUSG00000032508	Myd88	-	myeloid differentiation primary response gene 88	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38472850-4	chr15	38472336	38473336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17711.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115480894-4	chr6	115480387	115481387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 7 of 7)	MIR|SINE|MIR	58821.0	NM_011146	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71193369-4	chr6	71192863	71193863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6516.0	NM_017399	14080.0	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44173646-4	chr16	44173124	44174124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029889, intron 1 of 7)	CpG	227.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24136691-4	chr16	24136222	24137222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54032.0	NR_155457	108168278.0	Mm.417246	NR_155457		Gm46545	-	predicted gene, 46545	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-122886525-4	chr4	122886028	122887028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358036)	promoter-TSS (NM_001358036)	-452.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	132.5	309.5	169.0	96.0	253.5	154.5
Merged-chr8-40851141-3	chr8	40850633	40851633	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11234.0	NM_007514	11988.0	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	3.0	0.0	0.0	4.5	0.0	0.0
Merged-chr3-95624904-4	chr3	95624442	95625442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019561)	promoter-TSS (NM_019561)	-38.0	NM_019561	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30829603-4	chr2	30829111	30830111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1311.0	NM_133346	72323.0	Mm.27656	NM_133346	ENSMUSG00000039483	Asb6	2510004M11Rik|AA409356	ankyrin repeat and SOCS box-containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5888970-4	chr13	5888468	5889468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27479.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3292959-4	chr7	3292480	3293480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001093766)	promoter-TSS (NM_001093766)	-48.0	NM_001093766	50918.0	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	36.5	69.0	45.5	6.5	14.5	8.5
Merged-chr9-66516929-2	chr9	66516429	66517429	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001302116, exon 14 of 14)	3' UTR (NM_001302116, exon 14 of 14)	-2336.0	NM_175206	74165.0	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52267833-2	chr3	52267333	52268333	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019739)	promoter-TSS (NM_019739)	-504.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-99186997-4	chr4	99186502	99187502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-6932.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	128.5	359.5	210.0	102.0	293.5	211.0
Merged-chr7-24611326-4	chr7	24610826	24611826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102613)	promoter-TSS (NM_001102613)	-2.0	NM_001102613	232970.0	Mm.333663	NM_001102613	ENSMUSG00000074277	Phldb3	EG232970|Gm10102	pleckstrin homology like domain, family B, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5793355-2	chr11	5792855	5793855	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146309, intron 2 of 12)	intron (NM_001146309, intron 2 of 12)	4872.0	NM_013810	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	0.0	0.0	0.0	6.5	0.0	4.5
Merged-chr6-90369520-4	chr6	90369021	90370021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030260)	promoter-TSS (NM_030260)	27.0	NM_030260	80292.0	Mm.100116	NM_030260	ENSMUSG00000034430	Zxdc	A930012H20|B930086F11Rik|BC003332	ZXD family zinc finger C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95354785-2	chr11	95354285	95355285	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172543, intron 1 of 7)	intron (NM_172543, intron 1 of 7)	17767.0	NM_172543	215512.0	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105925851-4	chr1	105925303	105926303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64479.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-131916608-4	chr4	131916095	131917095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102394, intron 1 of 2)	intron (NR_102394, intron 1 of 2)	3434.0	NR_102394	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50366784-4	chr16	50366260	50367260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 2 of 16)	intron (NM_027444, intron 2 of 16)	65629.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120652998-4	chr2	120652503	120653503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43408.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	49.0	100.5	110.0	49.5	66.0	62.5
Merged-chr18-44828923-4	chr18	44828410	44829410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163013, exon 1 of 30)	exon (NM_001163013, exon 1 of 30)	245.0	NM_001163013	240255.0	Mm.244482	NM_001163013	ENSMUSG00000034653	Ythdc2	3010002F02Rik|BC037178	YTH domain containing 2	protein-coding	60.0	74.0	55.5	61.0	71.5	62.0
Merged-chr14-79509116-4	chr14	79508608	79509608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 1 of 8)	intron (NM_007920, intron 1 of 8)	-6566.0	NM_001286412	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-88459693-4	chr13	88459195	88460195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Zaphod|DNA|hAT-Tip100	-361777.0	NM_010103	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25281655-4	chr12	25281152	25282152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	152478.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	11.0	13.0	9.5	12.5	9.5	4.0
Merged-chr8-41044076-4	chr8	41043571	41044571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 5 of 13)	L1MB1|LINE|L1	-2140.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	34.5	59.5	52.5	26.5	79.5	47.5
Merged-chr17-78315899-4	chr17	78315418	78316418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 7 of 16)	intron (NM_015800, intron 7 of 16)	102234.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56819996-4	chr18	56819503	56820503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177115, intron 1 of 4)	intron (NM_177115, intron 1 of 4)	105545.0	NM_177115	320253.0	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134414705-4	chr1	134414189	134415189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001306069)	promoter-TSS (NM_001306069)	-689.0	NM_028320	72674.0	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-99100097-2	chr11	99099597	99100597	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	-10791.0	NM_172564	217169.0	Mm.262067	NM_172564	ENSMUSG00000017607	Tns4	9930017A07Rik|AA589547|AU016405|Cten	tensin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149955145-4	chr4	149954626	149955626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029035)	promoter-TSS (NM_029035)	-120.0	NM_029035	74646.0	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	5.5	20.0	13.0	4.0	20.0	17.0
Merged-chr7-101302022-4	chr7	101301502	101302502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111111)	promoter-TSS (NM_001111111)	86.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99817503-4	chr15	99816994	99817994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113545, intron 4 of 10)	CT-rich|Low_complexity|Low_complexity	2655.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	25.5	64.0	53.5	17.5	33.0	27.0
Merged-chr19-47394269-2	chr19	47393769	47394769	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 3 of 14)	intron (NM_008018, intron 3 of 14)	70142.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129032862-4	chr4	129032371	129033371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25400.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20319493-2	chr14	20318993	20319993	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027475)	TTS (NM_027475)	24803.0	NR_153364	67725.0	Mm.317636	NM_026341	ENSMUSG00000021809	Nudt13	4933433B15Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152210386-4	chr3	152209888	152210888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355372)	promoter-TSS (NM_001355372)	-34.0	NM_001355369	51886.0	Mm.278922	NM_057172	ENSMUSG00000028034	Fubp1	9530027K12Rik|D3Ertd330e|FBP|Fubp|Fubp4	far upstream element (FUSE) binding protein 1	protein-coding	115.0	332.5	293.5	96.0	285.5	249.5
Merged-chr7-97765409-4	chr7	97764929	97765929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23112.0	NM_001357365	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	9.5	26.5	18.5	7.5	29.0	28.5
Merged-chr7-45635405-4	chr7	45634916	45635916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_152217)	TTS (NR_152217)	3342.0	NR_152217	100126243.0	Mm.440600	NR_152217	ENSMUSG00000110357	A030001D20Rik	1110025D03Rik	RIKEN cDNA A030001D20 gene	ncRNA	13.0	102.5	32.0	26.5	49.5	23.0
Merged-chr4-63277569-1	chr4	63277069	63278069	+	1000.0	f1_c57bl6.idr	intron (NM_025685, intron 18 of 60)	intron (NM_025685, intron 18 of 60)	20718.0	NR_030477	735262.0		NR_030477	ENSMUSG00000070102	Mir455	Mirn455|mir-455|mmu-mir-455	microRNA 455	ncRNA	8.0	18.5	16.0	0.0	10.5	20.0
Merged-chr2-150921852-4	chr2	150921344	150922344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027014, intron 4 of 6)	intron (NM_027014, intron 4 of 6)	12250.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152406267-4	chr2	152405765	152406765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8219.0	NM_011438	20667.0	Mm.28424	NM_011438	ENSMUSG00000051817	Sox12	2010205A02Rik	SRY (sex determining region Y)-box 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79433136-4	chr15	79432651	79433651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359863, intron 2 of 10)	intron (NM_001359863, intron 2 of 10)	8667.0	NM_001289899	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121673280-4	chr11	121672806	121673806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178664)	promoter-TSS (NM_178664)	-155.0	NM_178664	210004.0	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81845867-4	chr15	81845330	81846330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12496.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	122.0	360.0	250.0	175.0	299.0	231.0
Merged-chr11-57645310-4	chr11	57644815	57645815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134189)	promoter-TSS (NM_134189)	-127.0	NM_134189	171212.0	Mm.271670	NM_134189	ENSMUSG00000020520	Galnt10	AU018154|C330012K04Rik|GalNAc-T10|GalNAc-T9|Galnt9|ppGaNTase	polypeptide N-acetylgalactosaminyltransferase 10	protein-coding	46.0	37.0	39.5	18.5	87.5	39.0
Merged-chr4-55816017-4	chr4	55815523	55816523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-283548.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113509553-4	chr13	113509069	113510069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6725.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	13.5	24.0	40.5	13.5	23.5	42.5
Merged-chr7-19578191-4	chr7	19577700	19578700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022409, intron 2 of 2)	intron (NM_022409, intron 2 of 2)	913.0	NM_022409	63872.0	Mm.23310	NM_022409	ENSMUSG00000011267	Zfp296	2210018A16Rik|Znf296	zinc finger protein 296	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27711306-4	chr3	27710808	27711808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173182)	promoter-TSS (NM_173182)	-856.0	NM_173182	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70439691-4	chr8	70439182	70440182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004062)	promoter-TSS (NM_001004062)	-109.0	NM_001004062	382056.0	Mm.227767	NM_001004062	ENSMUSG00000003575	Crtc1	AI413414|Mect1|R74955|TORC1|mKIAA0616	CREB regulated transcription coactivator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr16-58481374-4	chr16	58480855	58481855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 6 of 10)	intron (NM_001357433, intron 6 of 10)	42071.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118702789-2	chr9	118702299	118703299	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 15 of 27)	intron (NM_133721, intron 15 of 27)	-8893.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.0	14.0	17.5	17.5	20.5	11.5
Merged-chr8-35393637-4	chr8	35393147	35394147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	17906.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	50.5	132.0	87.0	50.0	150.0	120.0
Merged-chr12-98292484-4	chr12	98291982	98292982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23847.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5789410-4	chr11	5788912	5789912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146309, intron 1 of 12)	intron (NM_001146309, intron 1 of 12)	929.0	NM_013810	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	7.5	40.5	24.5	23.0	14.0	40.5
Merged-chr7-16840090-2	chr7	16839590	16840590	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039878, intron 17 of 17)	intron (NM_001039878, intron 17 of 17)	-2812.0	NM_001252458	101540.0	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78175504-4	chr9	78175010	78176010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040401)	promoter-TSS (NR_040401)	-404.0	NR_040401	320295.0	Mm.131285	NR_040401	ENSMUSG00000097574	C920006O11Rik	-	RIKEN cDNA C920006O11 gene	ncRNA	57.5	123.0	110.0	51.5	130.5	89.0
Merged-chr5-65076306-4	chr5	65075807	65076807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-31261.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0.0	5.0	1.0	1.0	0.0	1.5
Merged-chr10-128377075-5	chr10	128376600	128377600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172790)	promoter-TSS (NM_172790)	-24.0	NM_172790	237615.0	Mm.440177	NM_172790	ENSMUSG00000014498	Ankrd52	6430544C07|G431002C21Rik	ankyrin repeat domain 52	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34005813-4	chr1	34005310	34006310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276764, intron 3 of 102)	intron (NM_001276764, intron 3 of 102)	-6015.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156392972-4	chr2	156392481	156393481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024329)	promoter-TSS (NR_024329)	-2.0	NR_024329	347740.0	Mm.324242	NR_024329	ENSMUSG00000102869	2900097C17Rik	1810005K14Rik|4930563C06Rik	RIKEN cDNA 2900097C17 gene	ncRNA	9.0	43.0	18.0	27.0	39.5	13.5
Merged-chr16-22108339-4	chr16	22107863	22108863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	54936.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79174219-4	chr3	79173729	79174729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28354.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	25.0	111.5	70.5	49.0	129.5	84.0
Merged-chr9-100446219-4	chr9	100445733	100446733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40240.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	0.0	6.0	0.5	0.0	1.5	10.5
Merged-chr2-35496732-3	chr2	35496230	35497230	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35281.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95209558-4	chr4	95209044	95210044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157322.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	4.5	0.5	2.5	4.5	0.5	3.5
Merged-chr2-58921261-4	chr2	58920795	58921795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 10 of 13)	L1MA6|LINE|L1	166111.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45361574-4	chr7	45361063	45362063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029741, intron 2 of 29)	CpG	-4598.0	NR_015480	50994.0	Mm.389897	NM_016664	ENSMUSG00000091510	Mtag2	MAG	metastasis associated gene 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34947560-2	chr5	34947060	34948060	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1888.0	NM_173402	71729.0	Mm.196208	NM_173402	ENSMUSG00000029101	Rgs12	1200016K18Rik|4632412M04Rik|AI481290|E130309H11	regulator of G-protein signaling 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99874700-2	chr15	99874200	99875200	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113545, intron 1 of 10)	intron (NM_001113545, intron 1 of 10)	756.0	NM_001113545	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47731633-4	chr19	47731130	47732130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026377)	promoter-TSS (NM_026377)	-126.0	NM_026377	67788.0	Mm.181610	NM_026377	ENSMUSG00000025066	Sfr1	6330577E15Rik|Meir5	SWI5 dependent recombination repair 1	protein-coding	74.0	277.5	147.0	98.5	295.5	200.0
Merged-chr6-97288490-2	chr6	97287990	97288990	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 23 of 23)	intron (NM_145148, intron 23 of 23)	-35710.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-7281609-4	chr7	7281111	7282111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001302386)	TTS (NM_001302386)	-3322.0	NR_003555	76229.0	Mm.387947	NM_001113468	ENSMUSG00000095730	Vmn2r29	6430701C03Rik	vomeronasal 2, receptor 29	protein-coding	25.5	65.0	61.0	50.5	48.5	53.5
Merged-chr5-64241453-4	chr5	64240947	64241947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	11090.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	96.0	195.5	145.0	93.5	223.0	141.5
Merged-chr11-23682948-4	chr11	23682438	23683438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033654, intron 4 of 17)	intron (NM_001033654, intron 4 of 17)	16962.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88685791-4	chr3	88685304	88686304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028814)	promoter-TSS (NM_028814)	17.0	NR_151827	74200.0	Mm.251800	NM_028814	ENSMUSG00000028060	2810403A07Rik	A430106P18Rik|AI256352|AI451678|Blom7|Khdc4|Kiaa0907	RIKEN cDNA 2810403A07 gene	protein-coding	30.0	89.0	89.5	44.5	96.0	74.5
Merged-chr17-47688100-4	chr17	47687592	47688592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001290337)	TTS (NM_001290337)	294.0	NM_025365	66119.0	Mm.89912	NM_025365	ENSMUSG00000033475	Tomm6	1110002E23Rik|AI663970	translocase of outer mitochondrial membrane 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148902505-4	chr2	148902014	148903014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27002.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-95918648-3	chr5	95918148	95919148	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38291.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-22358167-4	chr6	22357667	22358667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2086.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34050675-4	chr13	34050167	34051167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026512, intron 4 of 6)	intron (NM_026512, intron 4 of 6)	13026.0	NM_026512	68021.0	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	11.5	37.0	36.5	68.5	153.5	126.5
Merged-chr17-47054776-4	chr17	47054263	47055263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44231.0	NM_001177374	224826.0	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146135593-4	chr3	146135102	146136102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134160, intron 8 of 11)	L2a|LINE|L2	13811.0	NM_134160	171166.0	Mm.114683	NM_134160	ENSMUSG00000036853	Mcoln3	6720490O21Rik|TRPML3|Va	mucolipin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167748318-2	chr2	167747818	167748818	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57141.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30280025-4	chr7	30279432	30280432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_144498)	promoter-TSS (NR_144498)	-162.0	NR_144498	108167416.0	Mm.471845	NR_144498		LOC108167416	-	uncharacterized LOC108167416	ncRNA	38.0	98.0	53.0	56.5	150.0	119.0
Merged-chr8-4275933-4	chr8	4275440	4276440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011592)	promoter-TSS (NM_011592)	-35.0	NM_011592	21856.0	Mm.195249	NM_011592	ENSMUSG00000002949	Timm44	0710005E20Rik|D8Ertd118e|Mimt44|Tim44	translocase of inner mitochondrial membrane 44	protein-coding	16.0	81.5	49.5	16.0	46.0	37.0
Merged-chr5-32196189-4	chr5	32195671	32196671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36537.0	NM_030072	665270.0	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	10.5	29.5	16.0	21.5	36.0	12.0
Merged-chr15-74988733-4	chr15	74988265	74989265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5335.0	NM_020498	57248.0	Mm.358339	NM_020498	ENSMUSG00000022586	Ly6i	AI789751|Ly-6I|Ly-6M	lymphocyte antigen 6 complex, locus I	protein-coding	247.5	714.0	416.0	178.0	533.5	291.0
Merged-chr11-117115056-4	chr11	117114502	117115502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029459)	promoter-TSS (NR_029459)	-170.0	NR_029459	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136147807-4	chr4	136147312	136148312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	3990.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	15.5	39.5	40.5	31.0	74.5	32.5
Merged-chr3-30793294-4	chr3	30792813	30793813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027016, exon 1 of 8)	5' UTR (NM_027016, exon 1 of 8)	437.0	NM_001357528	69276.0	Mm.26017	NM_027016	ENSMUSG00000027706	Sec62	3100002M17Rik|AI844545|AW545092|Dtrp1|HTP1|Tloc1	SEC62 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-87956728-4	chr10	87956218	87957218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9953.0	NR_000040	22172.0	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59879857-1	chr10	59879357	59880357	+	1000.0	f0_c57.idr	intron (NM_019965, intron 1 of 8)	CpG	266.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60211995-4	chr18	60211464	60212464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033767)	promoter-TSS (NM_001033767)	-113.0	NM_001033767	240327.0	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	30.0	72.0	32.5	37.5	91.0	56.0
Merged-chr17-26244747-4	chr17	26244213	26245213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001206335)	promoter-TSS (NM_001206335)	-471.0	NM_001206335	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	27.5	110.0	78.0	40.5	68.5	48.5
Merged-chr5-3491392-4	chr5	3490854	3491854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-52479.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-29729173-2	chr16	29728673	29729673	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	149839.0	NM_001199177	74143.0	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-3018035-1	chr9	3017535	3018535	+	1000.0	f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	20708.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-24246067-4	chr18	24245567	24246567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013814, exon 4 of 13)	exon (NM_013814, exon 4 of 13)	40073.0	NM_001160404	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19894767-4	chr3	19894277	19895277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027985)	promoter-TSS (NR_027985)	-94.0	NR_027985	70808.0	Mm.427103	NR_027985	ENSMUSG00000048106	4632415L05Rik	AI662792	RRS1 ribosome biogenesis regulator homolog pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55087136-2	chr1	55086636	55087636	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356512, intron 1 of 11)	intron (NM_001356512, intron 1 of 11)	796.0	NM_010477	15510.0	Mm.1777	NM_010477	ENSMUSG00000025980	Hspd1	60kDa|CPN60|HSP-60|HSP-65|Hsp60	heat shock protein 1 (chaperonin)	protein-coding	6.0	22.0	18.0	6.0	22.0	18.0
Merged-chr11-73199256-7	chr11	73198854	73199854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031251)	promoter-TSS (NM_031251)	-128.0	NM_029031	74637.0	Mm.200905	NM_029031	ENSMUSG00000005951	Shpk	4930431K22Rik|AI194947|AW260459|Carkl	sedoheptulokinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100421368-4	chr15	100420856	100421856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008732, intron 1 of 16)	intron (NM_008732, intron 1 of 16)	1699.0	NM_001146161	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	30.0	34.5	53.5	18.5	60.0	35.5
Merged-chr7-4741219-4	chr7	4740693	4741693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358044, intron 1 of 8)	intron (NM_001358044, intron 1 of 8)	1066.0	NM_001358044	232811.0	Mm.247844	NM_146177	ENSMUSG00000059851	Kmt5c	BC024816|Suv4-20h2|Suv420h2	lysine methyltransferase 5C	protein-coding	16.0	76.5	39.0	13.0	58.0	35.0
Merged-chr9-119075539-4	chr9	119075058	119076058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019676, intron 5 of 14)	intron (NM_019676, intron 5 of 14)	12703.0	NM_001293648	18799.0	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding	19.0	33.0	32.0	21.0	32.5	19.0
Merged-chr3-95989610-2	chr3	95989110	95990110	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_023320, exon 6 of 6)	exon (NM_023320, exon 6 of 6)	4100.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43383057-1	chr4	43382557	43383557	+	1000.0	f1_c57bl6.idr	intron (NM_001037709, intron 1 of 11)	intron (NM_001037709, intron 1 of 11)	1075.0	NM_001037709	100213.0	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	166.0	415.5	258.0	125.5	248.0	178.0
Merged-chr7-88282018-2	chr7	88281518	88282518	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009982, intron 2 of 6)	intron (NM_009982, intron 2 of 6)	3933.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	5.0	17.5	10.5	11.5	19.0	10.0
Merged-chr8-69902430-3	chr8	69901929	69902929	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_032004, exon 1 of 1)	exon (NM_032004, exon 1 of 1)	129.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	15.5	42.0	26.0	29.5	50.5	18.0
Merged-chr18-20803210-4	chr18	20802714	20803714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-56810.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136143371-2	chr4	136142871	136143871	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008321)	promoter-TSS (NM_008321)	-451.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	33.0	107.0	61.5	29.5	87.0	38.0
Merged-chr1-118507457-4	chr1	118507021	118508021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359330, intron 16 of 39)	ID4|SINE|ID	-48256.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	6.5	4.0	1.5	0.5	4.5	1.0
Merged-chr13-49187632-4	chr13	49187142	49188142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013610)	promoter-TSS (NM_013610)	95.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87357855-4	chr3	87357353	87358353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009690)	promoter-TSS (NM_009690)	-28.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	120.0	262.5	268.5	136.5	353.5	267.5
Merged-chr15-79893906-1	chr15	79893406	79894406	+	1000.0	f1_c57bl6.idr	promoter-TSS (NR_030675)	promoter-TSS (NR_030675)	-768.0	NR_030675	109361.0	Mm.394656	NR_030675		D730005E14Rik	-	RIKEN cDNA D730005E14 gene	ncRNA	9.0	50.5	36.5	35.0	22.5	8.5
Merged-chr5-38505533-4	chr5	38505024	38506024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3372.0	NM_145559	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	47.0	71.5	76.5	19.0	55.0	39.5
Merged-chr9-14381019-4	chr9	14380520	14381520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028013, exon 1 of 2)	5' UTR (NM_028013, exon 1 of 2)	222.0	NM_028013	71946.0	Mm.41423	NM_028013	ENSMUSG00000037419	Endod1	2210414F18Rik|2310067E08Rik|C85344	endonuclease domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-38202444-2	chr3	38201963	38202963	+	1000.0	f0_balb.idr|f0_c57.idr	TTS (NR_040541)	TTS (NR_040541)	5656.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134920340-4	chr4	134919849	134920849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3276.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-14598357-4	chr19	14597866	14598866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302950)	promoter-TSS (NM_001302950)	-183.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43032643-4	chr17	43032157	43033157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 1 of 5)	intron (NM_178589, intron 1 of 5)	16102.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	1.0	12.5	8.0	17.5	37.5	18.0
Merged-chr3-121594797-2	chr3	121594297	121595297	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48688.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104621166-2	chr8	104620666	104621666	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007663, intron 6 of 17)	intron (NM_007663, intron 6 of 17)	3230.0	NM_007663	12556.0	Mm.19423	NM_007663	ENSMUSG00000031881	Cdh16	-	cadherin 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-68068445-4	chr15	68067919	68068919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	190437.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-143115230-4	chr6	143114760	143115760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153819, intron 7 of 8)	intron (NR_153819, intron 7 of 8)	-15108.0	NM_001109688	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17658610-4	chr12	17658104	17659104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32205.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	55.5	165.5	74.0	93.0	183.5	106.5
Merged-chr2-166293159-4	chr2	166292669	166293669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033467, intron 2 of 2)	intron (NR_033467, intron 2 of 2)	19261.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	12.0	38.5	11.5	9.5	6.0	18.0
Merged-chr15-72972005-4	chr15	72971496	72972496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029640, intron 8 of 21)	ORR1D2|LTR|ERVL-MaLR	83816.0	NM_029640	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	3.5	4.0	0.0	2.0	3.0	0.0
Merged-chr18-61399068-4	chr18	61398541	61399541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133249, intron 1 of 11)	CpG	-1141.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81384824-4	chr10	81384330	81385330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133964, intron 1 of 4)	intron (NM_133964, intron 1 of 4)	402.0	NM_133964	102115.0	Mm.294975	NM_133964	ENSMUSG00000078440	Dohh	1110033C18Rik|AI585913|AL022869|Hlrc1	deoxyhypusine hydroxylase/monooxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83650864-4	chr7	83650356	83651356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 15 of 18)	intron (NM_001360088, intron 15 of 18)	4639.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	10.0	11.0	8.5	1.5	9.0	6.0
Merged-chr11-74838596-4	chr11	74838092	74839092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010813, intron 4 of 5)	CpG	7668.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	95.0	259.0	176.5	116.0	271.5	152.0
Merged-chr5-148399917-4	chr5	148399416	148400416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007513)	promoter-TSS (NM_007513)	-12.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	9.5	7.0	5.0	13.5	22.0	22.0
Merged-chr9-23670843-4	chr9	23670352	23671352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-427166.0	NM_175678	319239.0	Mm.130824	NM_175678	ENSMUSG00000043659	Npsr1	9330128H10Rik|GPRA|Gpr154|MVTR|PGR14|VRR1	neuropeptide S receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171150577-4	chr1	171150057	171151057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008623)	promoter-TSS (NM_008623)	46.0	NM_025321	66052.0	Mm.198138	NM_025321	ENSMUSG00000058076	Sdhc	0610010E03Rik|AI316496|AU019277	succinate dehydrogenase complex, subunit C, integral membrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32277639-6	chr16	32277166	32278166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027355, exon 1 of 6)	5' UTR (NM_027355, exon 1 of 6)	205.0	NM_027355	70238.0	Mm.228263	NM_027355	ENSMUSG00000014074	Rnf168	3110001H15Rik	ring finger protein 168	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108994783-4	chr12	108994269	108995269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 4 of 6)	intron (NM_177602, intron 4 of 6)	73448.0	NM_001163175	380785.0	Mm.342085	NM_001163175	ENSMUSG00000040867	Begain	BM948371|Gm897	brain-enriched guanylate kinase-associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70791579-4	chr8	70791074	70792074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199308, intron 1 of 25)	intron (NM_199308, intron 1 of 25)	859.0	NM_199308	546071.0	Mm.250731	NM_199308	ENSMUSG00000031833	Mast3	BC024265|mKIAA0561	microtubule associated serine/threonine kinase 3	protein-coding	43.0	104.0	89.0	21.0	79.0	74.0
Merged-chr11-114683445-2	chr11	114682945	114683945	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	7977.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-66002709-4	chr18	66002210	66003210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172062)	promoter-TSS (NM_001172062)	-75.0	NM_001172062	70361.0	Mm.290857	NM_027400	ENSMUSG00000041891	Lman1	2610020P13Rik|AI326273|AU043785|C730041J05|ERGIC53|F5F8D|MCFD1|MR60|P58|gp58	lectin, mannose-binding, 1	protein-coding	3.5	0.0	1.0	0.0	4.0	3.5
Merged-chr5-65867945-4	chr5	65867433	65868433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081105, intron 1 of 2)	MER63D|DNA|hAT-Blackjack	4364.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	29.0	93.0	34.5	14.0	65.5	45.0
Merged-chr2-157156343-4	chr2	157155836	157156836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011249, intron 19 of 21)	CT-rich|Low_complexity|Low_complexity	-21114.0	NM_018851	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191878142-4	chr1	191877659	191878659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28622.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	46.5	79.0	53.5	27.0	89.5	68.5
Merged-chr11-63091215-4	chr11	63090713	63091713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027660, intron 7 of 7)	intron (NM_027660, intron 7 of 7)	29554.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23314460-1	chr16	23313960	23314960	+	1000.0	f0_c57.idr	intron (NM_001252506, intron 1 of 6)	L1_Mus3|LINE|L1	23990.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-94413151-4	chr3	94412630	94413630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357713)	promoter-TSS (NM_001357713)	-114.0	NM_001357713	72634.0	Mm.331198	NM_028307	ENSMUSG00000041912	Tdrkh	2700091C21Rik|Tdrd2	tudor and KH domain containing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-100969726-4	chr3	100969208	100970208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013026)	promoter-TSS (NM_001013026)	-45.0	NM_001013026	74044.0	Mm.270961	NM_001013026	ENSMUSG00000033222	Ttf2	4632434F22Rik|8030447N19|AV218430	transcription termination factor, RNA polymerase II	protein-coding	1.0	3.0	10.0	0.0	0.0	9.5
Merged-chr15-100204775-4	chr15	100204275	100205275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172819, intron 27 of 32)	intron (NM_172819, intron 27 of 32)	-16739.0	NR_037311	100499528.0		NR_037311	ENSMUSG00000092752	Mir3473a	Mir3473|mir-3473a|mmu-mir-3473|mmu-mir-3473a	microRNA 3473a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80708197-4	chr18	80707741	80708741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164112)	promoter-TSS (NM_001164112)	-68.0	NM_001164112	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	28.0	45.5	80.5	16.5	52.5	58.0
Merged-chr12-4544589-4	chr12	4544085	4545085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME4b|LINE|L1	20472.0	NR_136891	102634330.0	Mm.402324	NR_136891	ENSMUSG00000112422	Gm31938	-	predicted gene, 31938	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46760905-3	chr19	46760414	46761414	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033569)	promoter-TSS (NM_033569)	-695.0	NM_033569	94219.0	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	0.0	9.5	0.5	7.0	1.5	0.0
Merged-chr7-5056882-2	chr7	5056382	5057382	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_146178, exon 1 of 5)	5' UTR (NM_146178, exon 1 of 5)	156.0	NM_146178	232821.0	Mm.482157	NM_146178	ENSMUSG00000035228	Ccdc106	BC018462	coiled-coil domain containing 106	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57765966-4	chr9	57765451	57766451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007713)	promoter-TSS (NM_007713)	-91.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-183623480-4	chr1	183623012	183624012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-125465.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-94614478-4	chr4	94613990	94614990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290568)	promoter-TSS (NM_001290568)	-1.0	NM_001290568	67694.0	Mm.240619	NM_026319	ENSMUSG00000028576	Ift74	1700029H06Rik|Ccdc2|Cmg1|b2b796Clo	intraflagellar transport 74	protein-coding	5.5	10.0	7.0	18.0	8.0	11.5
Merged-chr10-81350570-4	chr10	81350066	81351066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010440)	promoter-TSS (NM_010440)	-109.0	NM_001163166	15353.0	Mm.38474	NM_010440	ENSMUSG00000020232	Hmg20b	AW610687|BRAF35|Hmgx2|Hmgxb2|Smarce1r	high mobility group 20B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105687612-4	chr3	105687113	105688113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017397)	promoter-TSS (NM_017397)	-42.0	NM_017397	53975.0	Mm.272826	NM_017397	ENSMUSG00000027905	Ddx20	GEMIN3|dp103	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	protein-coding	54.5	137.5	121.5	79.0	148.5	130.0
Merged-chr12-75818278-4	chr12	75817795	75818795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005510)	promoter-TSS (NM_001005510)	-23.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39535682-4	chr1	39535174	39536174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028043)	promoter-TSS (NM_028043)	-27.0	NM_028043	52846.0	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147742724-4	chr5	147742243	147743243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16755.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28386321-2	chr17	28385821	28386821	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21105.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-40322035-4	chr1	40321529	40322529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2560.0	NM_001356478	107527.0	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38602349-4	chr15	38601877	38602877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-7443.0	NR_045757	69679.0	Mm.416890	NR_045757	ENSMUSG00000102106	2310043O21Rik	-	RIKEN cDNA 2310043O21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167376344-4	chr2	167375840	167376840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27162.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113854738-3	chr5	113854222	113855222	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011779, intron 3 of 10)	intron (NM_011779, intron 3 of 10)	-24221.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0.0	5.0	3.5	1.5	4.5	10.5
Merged-chr11-34796371-2	chr11	34795871	34796871	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC4|LINE|L1	-12466.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145903283-4	chr2	145902794	145903794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001141965)	promoter-TSS (NM_001141965)	53.0	NM_001141965	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	10.5	56.0	34.5	32.0	49.5	44.0
Merged-chr2-32917728-4	chr2	32917236	32918236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146119, intron 5 of 13)	intron (NM_146119, intron 5 of 13)	41602.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11007794-4	chr4	11007308	11008308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175175)	promoter-TSS (NM_175175)	-189.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	43.5	139.0	105.5	49.0	110.5	106.0
Merged-chr2-69719564-4	chr2	69719064	69720064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-3524.0	NM_001081086	228005.0	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	3.0	11.0	4.0	4.0	12.0	2.0
Merged-chr10-60286761-4	chr10	60286239	60287239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146124, intron 1 of 13)	intron (NM_001146124, intron 1 of 13)	2278.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.0	0.0	0.0	3.0	17.5	22.0
Merged-chr10-78009839-4	chr10	78009350	78010350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008826)	promoter-TSS (NM_008826)	-43.0	NM_001358793	18641.0	Mm.269649	NM_008826	ENSMUSG00000020277	Pfkl	AA407869|ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver, B-type	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85557332-4	chr8	85556828	85557828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2057.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	6.0	57.0	20.5	19.5	33.5	23.5
Merged-chr3-7755714-4	chr3	7755223	7756223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A|LTR|ERVL	-141963.0	NM_001313888	16196.0	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47726125-1	chr9	47725625	47726625	+	1000.0	f1_balb.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	92083.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	8.5	55.5	28.0	27.0	62.0	44.0
Merged-chr3-38128690-4	chr3	38128205	38129205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79414.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115650024-4	chr6	115649536	115650536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029780, intron 1 of 16)	intron (NM_029780, intron 1 of 16)	25852.0	NM_001356334	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23829195-4	chr17	23828692	23829692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026305)	promoter-TSS (NM_026305)	-83.0	NM_026305	67673.0	Mm.153758	NM_026305	ENSMUSG00000055839	Elob	0610040H15Rik|Tceb2	elongin B	protein-coding	19.0	47.0	47.5	23.0	73.0	46.0
Merged-chr7-100863475-4	chr7	100862965	100863965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177073)	promoter-TSS (NM_177073)	-52.0	NM_177073	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22266001-4	chr16	22265494	22266494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009186)	promoter-TSS (NM_009186)	11.0	NM_001330554	20462.0	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-58586154-4	chr4	58585653	58586653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32662.0	NM_010336	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	1.5	20.0	3.0	0.0	2.5	4.5
Merged-chr13-112443356-4	chr13	112442851	112443851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20719.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11463882-4	chr8	11463409	11464409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-14020.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86652358-2	chr11	86651858	86652858	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 5 of 11)	intron (NM_001356531, intron 5 of 11)	18917.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142443673-4	chr5	142443155	142444155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 2 of 8)	intron (NM_199068, intron 2 of 8)	-20276.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	1.5	3.5	4.0	0.0	6.0	2.0
Merged-chr8-109750401-2	chr8	109749901	109750901	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12662.0	NM_001080930	52335.0	Mm.276770	NM_001080930	ENSMUSG00000069895	Atxn1l	AW558552|Boat|C330011L24Rik|D6Mgi37|D8Ertd587e	ataxin 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91907178-2	chr2	91906678	91907678	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080754, intron 16 of 18)	MLT1A|LTR|ERVL-MaLR	-15011.0	NM_007699	12672.0	Mm.330405	NM_007699	ENSMUSG00000040495	Chrm4	Chrm-4|M4	cholinergic receptor, muscarinic 4	protein-coding	0.0	0.0	0.5	1.5	4.0	0.5
Merged-chr2-11739755-4	chr2	11739244	11740244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34032.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91847709-4	chr16	91847210	91848210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 19 of 28)	intron (NM_001110275, intron 19 of 28)	83920.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150011930-4	chr4	150011425	150012425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2902.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-148577866-4	chr6	148577367	148578367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	36442.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-69098996-2	chr2	69098496	69099496	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 8 of 10)	intron (NM_001347161, intron 8 of 10)	-36804.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164822941-4	chr2	164822438	164823438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178375)	TTS (NM_178375)	252.0	NM_028028	71971.0	Mm.161149	NM_028028	ENSMUSG00000017764	Zswim1	2410003H12Rik|AI850991|BB046916	zinc finger SWIM-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109419189-4	chr4	109418685	109419685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145948, intron 2 of 17)	intron (NM_001145948, intron 2 of 17)	3538.0	NM_001145948	230603.0	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22027391-4	chr16	22026903	22027903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027488, intron 7 of 16)	intron (NR_027488, intron 7 of 16)	17919.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71371679-4	chr8	71371182	71372182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029865, exon 1 of 4)	exon (NM_029865, exon 1 of 4)	384.0	NM_001293800	77090.0	Mm.440170	NM_029865	ENSMUSG00000002396	Ocel1	9430098E02Rik|AI326022|AI593544	occludin/ELL domain containing 1	protein-coding	110.5	370.0	183.5	56.0	134.5	65.0
Merged-chr16-43209732-4	chr16	43209225	43210225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285805, intron 2 of 10)	L1MD2|LINE|L1	-37559.0	NM_181058	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43778323-4	chr13	43777840	43778840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6772.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-36863046-4	chr3	36862521	36863521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172679)	promoter-TSS (NM_172679)	-85.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-49019080-6	chr17	49018580	49019580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027452, intron 1 of 2)	intron (NM_027452, intron 1 of 2)	86498.0	NM_027452	70530.0	Mm.133607	NM_027452	ENSMUSG00000040490	Lrfn2	5730420O05Rik|SALM1|mKIAA1246	leucine rich repeat and fibronectin type III domain containing 2	protein-coding	0.0	9.0	0.0	3.0	15.0	4.0
Merged-chr1-86527403-4	chr1	86526892	86527892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008972, intron 1 of 4)	CpG-365	835.0	NM_001360830	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	108.0	271.5	186.5	108.0	270.0	186.5
Merged-chr7-27486923-4	chr7	27486428	27487428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018820)	promoter-TSS (NM_018820)	-25.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-141070058-4	chr6	141069538	141070538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-179231.0	NM_018779	54611.0	Mm.103728	NM_018779	ENSMUSG00000041741	Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33781293-4	chr17	33780799	33781799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020581, exon 1 of 7)	exon (NM_020581, exon 1 of 7)	276.0	NM_020581	57875.0	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	20.5	52.0	39.0	33.0	35.5	39.0
Merged-chr4-126677604-4	chr4	126677116	126678116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011970)	promoter-TSS (NM_011970)	-27.0	NM_011970	26445.0	Mm.22233	NM_011970	ENSMUSG00000028837	Psmb2	AU045357|AW108089|C7-I|D4Wsu33e|HC7-I	proteasome (prosome, macropain) subunit, beta type 2	protein-coding	2.5	7.5	15.0	13.5	36.5	30.0
Merged-chr6-136519087-4	chr6	136518562	136519562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019426, intron 1 of 14)	CpG	211.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	143.5	316.5	231.5	149.0	262.0	171.0
Merged-chr13-45109155-4	chr13	45108652	45109652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107056.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	14.0	38.5	19.0	7.5	19.5	19.5
Merged-chr10-88494858-2	chr10	88494358	88495358	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144807, intron 1 of 7)	intron (NM_144807, intron 1 of 7)	9112.0	NR_027477	212862.0	Mm.288897	NM_144807	ENSMUSG00000060002	Chpt1	-	choline phosphotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80331715-4	chr12	80331217	80332217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59960.0	NR_037207	100526530.0		NR_037207	ENSMUSG00000105972	Mir1843a	Mir1843|mir-1843a|mmu-mir-1843|mmu-mir-1843a	microRNA 1843a	ncRNA	2.5	0.5	7.5	1.5	6.5	6.5
Merged-chr4-144906659-4	chr4	144906160	144907160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	13523.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63406549-2	chr4	63406049	63407049	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-3104.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27428784-4	chr14	27428288	27429288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001114879)	promoter-TSS (NM_001114879)	-46.0	NM_028945	218850.0	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	68.0	82.5	91.0	51.5	87.0	76.5
Merged-chr9-27030103-4	chr9	27029634	27030634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178027)	promoter-TSS (NM_178027)	-40.0	NM_178027	69091.0	Mm.218717	NM_178027	ENSMUSG00000031988	Vps26b	1810012I05Rik|2310075A12Rik|AI848392	VPS26 retromer complex component B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131090395-4	chr1	131089893	131090893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	7450.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	44.0	116.0	83.5	59.5	145.0	105.0
Merged-chr7-143548319-4	chr7	143547807	143548807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285489, intron 1 of 14)	intron (NM_001285489, intron 1 of 14)	521.0	NM_001285490	17955.0	Mm.294625	NM_008672	ENSMUSG00000059119	Nap1l4	2810410H14Rik|AI316776|D7Wsu30e|Nap2	nucleosome assembly protein 1-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-67583341-2	chr3	67582833	67583833	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025813, intron 1 of 15)	intron (NM_025813, intron 1 of 15)	565.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	30.5	46.5	28.5	29.5	43.0	36.0
Merged-chr3-89843333-4	chr3	89842839	89843839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172530, intron 2 of 5)	intron (NM_172530, intron 2 of 5)	11969.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75348423-4	chr11	75347932	75348932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102611)	promoter-TSS (NM_001102611)	-1.0	NM_001102611	319822.0	Mm.340377	NM_177009	ENSMUSG00000018809	Smyd4	G430029E23Rik	SET and MYND domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155382185-4	chr2	155381698	155382698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178111, intron 1 of 3)	CpG	342.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	142.5	377.0	280.0	198.0	339.5	206.5
Merged-chr5-34543319-4	chr5	34542831	34543831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145858)	promoter-TSS (NM_001145858)	-34.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66856747-4	chr15	66856250	66857250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24921.0	NM_009192	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119798345-4	chr8	119797850	119798850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19934.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160269518-4	chr2	160269005	160270005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57989.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6827368-4	chr17	6826870	6827870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44590.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90052658-4	chr3	90052190	90053190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165984)	promoter-TSS (NM_001165984)	-112.0	NM_001287086	99650.0	Mm.300083	NM_025762	ENSMUSG00000027942	4933434E20Rik	5730552F22Rik|AI462154|NICE-3|NS5ATP4	RIKEN cDNA 4933434E20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121748510-4	chr11	121747993	121748993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46066.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87689037-4	chr16	87688534	87689534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9920.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153319419-4	chr2	153318902	153319902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008444, intron 2 of 8)	intron (NM_008444, intron 2 of 8)	26408.0	NR_040318	72326.0	Mm.400102	NR_040318	ENSMUSG00000073236	2500004C02Rik	-	RIKEN cDNA 2500004C02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95298027-4	chr10	95297516	95298516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	25693.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	82.5	159.0	149.0	106.5	154.0	127.0
Merged-chr3-96160381-4	chr3	96159886	96160886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001025614, exon 12 of 12)	3' UTR (NM_001025614, exon 12 of 12)	-1584.0	NM_181409	194126.0	Mm.268536	NM_181409	ENSMUSG00000045934	Mtmr11	AI035306|BC051083|Cra	myotubularin related protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65335712-4	chr5	65335229	65336229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347358)	promoter-TSS (NM_001347358)	-90.0	NM_001347358	19687.0	Mm.148877	NM_011258	ENSMUSG00000029191	Rfc1	140kDa|Alp145|RFC140|Recc1	replication factor C (activator 1) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50236757-4	chr11	50236265	50237265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132732, intron 4 of 4)	CpG	1767.0	NM_001313968	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35557024-4	chr8	35556529	35557529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30769.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	4.0	37.5	17.0	10.0	15.0	6.0
Merged-chr3-40526747-2	chr3	40526247	40527247	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-3835.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58502091-4	chr16	58501603	58502603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 2 of 10)	intron (NM_001357433, intron 2 of 10)	21323.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-46922133-2	chr7	46921633	46922633	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-2164.0	NM_021884	22088.0	Mm.241334	NM_021884	ENSMUSG00000014402	Tsg101	AI255943|CC2	tumor susceptibility gene 101	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181581180-4	chr2	181580699	181581699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164597)	TTS (NM_001164597)	774.0	NM_026765	68556.0	Mm.232400	NM_026765	ENSMUSG00000089917	Uckl1	1110007H10Rik|Urkl1	uridine-cytidine kinase 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-22043101-4	chr13	22042594	22043594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178198)	promoter-TSS (NM_178198)	-136.0	NM_178198	319183.0	Mm.371766	NM_178198	ENSMUSG00000069300	Hist1h2bj	-	histone cluster 1, H2bj	protein-coding	41.0	90.5	97.0	38.0	71.5	56.5
Merged-chr5-8868166-2	chr5	8867666	8868666	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25555.0	NM_008830	18670.0	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3868273-4	chr12	3867798	3868798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 4 of 22)	intron (NM_007872, intron 4 of 22)	-6054.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120570428-4	chr5	120569943	120570943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145853, intron 2 of 27)	intron (NM_145853, intron 2 of 27)	18170.0	NM_145853	252972.0	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-23383365-4	chr1	23382864	23383864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081079)	promoter-TSS (NM_001081079)	-189.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168543530-2	chr2	168543030	168544030	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037177, intron 3 of 6)	intron (NM_001037177, intron 3 of 6)	46835.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-15045420-6	chr9	15044868	15045868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019482, exon 1 of 5)	5' UTR (NM_019482, exon 1 of 5)	110.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77856790-4	chr18	77856288	77857288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 5 of 14)	intron (NM_013831, intron 5 of 14)	-60398.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-22550382-4	chr5	22549887	22550887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102315)	promoter-TSS (NR_102315)	-26.0	NR_102315	320719.0	Mm.459265	NR_102315	ENSMUSG00000097207	6030443J06Rik	1700030G06Rik	RIKEN cDNA 6030443J06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-88731936-4	chr9	88731445	88732445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007536)	promoter-TSS (NM_007536)	-95.0	NM_007536	12047.0	Mm.378888	NM_007536	ENSMUSG00000099974	Bcl2a1d	A1-d	B cell leukemia/lymphoma 2 related protein A1d	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125707805-4	chr7	125707324	125708324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207239)	promoter-TSS (NM_207239)	-46.0	NM_001081022	233865.0	Mm.274389	NM_001081022	ENSMUSG00000032743	D430042O09Rik	Kiaa0556	RIKEN cDNA D430042O09 gene	protein-coding	0.0	0.5	6.5	1.5	0.0	5.5
Merged-chr2-90479942-4	chr2	90479441	90480441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001135657)	promoter-TSS (NM_001135657)	-767.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-40573825-4	chr6	40573320	40574320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2432.0	NM_146383	258381.0	Mm.377469	NM_146383	ENSMUSG00000045514	Olfr460	MOR120-2	olfactory receptor 460	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20731428-4	chr14	20730949	20731949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010811, intron 2 of 14)	intron (NM_010811, intron 2 of 14)	3113.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88511478-4	chr17	88510983	88511983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18641.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	0.0	0.0	1.5	0.0	1.0	3.5
Merged-chr12-16894766-7	chr12	16894259	16895259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009072)	promoter-TSS (NM_009072)	-219.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	101.5	357.5	262.0	126.5	236.5	235.0
Merged-chr17-57334963-4	chr17	57334447	57335447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23739.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39207021-4	chr6	39206561	39207561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033430)	promoter-TSS (NM_001033430)	-288.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75938475-4	chr2	75937967	75938967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028235)	promoter-TSS (NM_028235)	-5.0	NM_028235	72421.0	Mm.275109	NM_028235	ENSMUSG00000075273	Ttc30b	2510042P03Rik|Tcc30b	tetratricopeptide repeat domain 30B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4314109-4	chr18	4313622	4314622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38831.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-97192859-3	chr13	97192357	97193357	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010422, intron 2 of 13)	intron (NM_010422, intron 2 of 13)	5500.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92675385-4	chr5	92674906	92675906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177230)	promoter-TSS (NM_177230)	-135.0	NM_001360019	320696.0	Mm.209991	NM_177230	ENSMUSG00000050050	Ccdc158	4932413O14Rik	coiled-coil domain containing 158	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143055758-4	chr5	143055245	143056245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	57275.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-44269142-4	chr12	44268642	44269642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026164)	promoter-TSS (NM_026164)	-12.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	10.5	36.0	27.5	17.5	22.5	33.5
Merged-chr10-14132444-4	chr10	14131936	14132936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010437, exon 4 of 9)	exon (NM_010437, exon 4 of 9)	166057.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	11.0	57.5	16.5	21.0	29.5	19.5
Merged-chr8-69832424-4	chr8	69831860	69832860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024954)	promoter-TSS (NM_001024954)	-264.0	NM_001357308	80720.0	Mm.210823	NM_001024954	ENSMUSG00000031860	Pbx4	2410015M21Rik|AI429113|AW045266	pre B cell leukemia homeobox 4	protein-coding	13.5	9.5	18.0	4.0	6.5	12.0
Merged-chr10-28520104-3	chr10	28519597	28520597	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359356, intron 13 of 30)	intron (NM_001359356, intron 13 of 30)	-148263.0	NM_001305663	210757.0	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127290417-4	chr7	127289917	127290917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT-int|LTR|ERVL-MaLR	-5843.0	NM_001253873	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53926495-4	chr11	53925992	53926992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34789.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87301772-4	chr17	87301254	87302254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 3 of 19)	L1MB2|LINE|L1	18868.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	1.5	7.0	5.0	1.5	7.5	7.0
Merged-chr8-94193817-2	chr8	94193317	94194317	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14728.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-132753111-4	chr3	132752597	132753597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163455, intron 22 of 25)	intron (NM_001163455, intron 22 of 25)	68953.0	NM_001163455	271981.0	Mm.257864	NM_173032	ENSMUSG00000028030	Tbck	1700120J03Rik|9430001M19|A630047E20Rik|C030007I09Rik|Tbckl	TBC1 domain containing kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136658160-4	chr6	136657687	136658687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025806, intron 1 of 10)	intron (NM_025806, intron 1 of 10)	3706.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	143.0	306.0	218.5	136.5	248.0	195.0
Merged-chr6-128479945-4	chr6	128479459	128480459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028593, intron 2 of 4)	intron (NR_028593, intron 2 of 4)	41202.0	NR_028593	791299.0	Mm.297516	NR_028592	ENSMUSG00000059659	Gm10069	-	predicted gene 10069	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45752866-4	chr17	45752387	45753387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	18381.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	1.5	0.0	0.0	0.0	7.0	5.5
Merged-chr1-36082425-4	chr1	36081927	36082927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	14027.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-84968219-2	chr16	84967719	84968719	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 13 of 15)	intron (NM_001198825, intron 13 of 15)	-3992.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148889154-4	chr2	148888656	148889656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13644.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7063174-4	chr10	7062659	7063659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39974.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38997494-2	chr2	38996994	38997994	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029687)	promoter-TSS (NM_029687)	-815.0	NM_029687	76646.0	Mm.358777	NM_029687	ENSMUSG00000035295	Wdr38	1700123D08Rik	WD repeat domain 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121393616-2	chr5	121393116	121394116	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4366.0	NM_172722	231713.0	Mm.33919	NM_172722	ENSMUSG00000042719	Naa25	4833422K13Rik|A630046C11|AI450868|C330023M02Rik|Mdm20	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding	0.0	0.0	0.0	3.5	0.0	0.0
Merged-chr12-100776201-4	chr12	100775689	100776689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2868.0	NM_001361023	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	13.5	27.0	24.5	14.0	37.5	26.0
Merged-chr1-101902288-4	chr1	101901796	101902796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	746528.0	NR_037989	100504525.0	Mm.87065	NR_037989	ENSMUSG00000100684	Gm20268	-	predicted gene, 20268	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-62347358-4	chr14	62346860	62347860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026001, intron 2 of 10)	intron (NM_026001, intron 2 of 10)	15292.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	20.5	47.5	30.0	7.0	27.0	23.0
Merged-chr1-191119519-4	chr1	191118996	191119996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	21082.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	58.5	116.5	79.5	117.5	204.5	224.5
Merged-chr11-21024700-4	chr11	21024199	21025199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66625.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-145105645-4	chr3	145105153	145106153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6547.0	NM_178697	229933.0	Mm.331420	NM_178697	ENSMUSG00000036960	Clca2	4732440A06|AI586120|Clca5	chloride channel accessory 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44248304-4	chr19	44247802	44248802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	45014.0	NM_024450	30049.0	Mm.480594	NM_024450	ENSMUSG00000025202	Scd3	4930513N16Rik	stearoyl-coenzyme A desaturase 3	protein-coding	6.5	25.0	17.0	15.0	23.0	26.5
Merged-chr7-28741874-4	chr7	28741444	28742444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023637)	promoter-TSS (NM_023637)	-24.0	NM_023637	71984.0	Mm.333725	NM_023637	ENSMUSG00000070699	Sars2	2410015F05Rik|D7Ertd353e|SerRS|SerRSmt	seryl-aminoacyl-tRNA synthetase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107629274-4	chr9	107628781	107629781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008138, intron 1 of 8)	CT-rich|Low_complexity|Low_complexity	6061.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	67.5	147.5	89.0	32.5	99.0	95.5
Merged-chr1-136569404-4	chr1	136568915	136569915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55486.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52156040-4	chr13	52155552	52156552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59311.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85701037-4	chr12	85700501	85701501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016767, intron 2 of 2)	intron (NM_016767, intron 2 of 2)	14281.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24151536-4	chr16	24151027	24152027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68837.0	NR_155457	108168278.0	Mm.417246	NR_155457		Gm46545	-	predicted gene, 46545	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74837798-4	chr11	74837216	74838216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010813, exon 4 of 6)	exon (NM_010813, exon 4 of 6)	6792.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	91.5	247.5	191.5	108.5	325.5	182.0
Merged-chr2-167932289-4	chr2	167931809	167932809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011201)	promoter-TSS (NM_011201)	-18.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-16573365-4	chr16	16572865	16573865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	-13146.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-40900176-4	chr13	40899678	40900678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008105, intron 1 of 2)	intron (NM_008105, intron 1 of 2)	13420.0	NM_008105	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70983005-4	chr11	70982501	70983501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007573)	promoter-TSS (NM_007573)	25.0	NM_007573	12261.0	Mm.30049	NM_007573	ENSMUSG00000018446	C1qbp	AA407365|AA986492|D11Wsu182e|HABP1|P32|gC1qBP	complement component 1, q subcomponent binding protein	protein-coding	1.0	9.5	5.0	9.0	0.0	9.0
Merged-chr6-53045690-4	chr6	53045176	53046176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 1 of 4)	intron (NM_173406, intron 1 of 4)	22948.0	NM_173406	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70058089-2	chr14	70057589	70058589	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-19356.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78535512-4	chr11	78535022	78536022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018854)	promoter-TSS (NM_018854)	738.0	NM_001159392	21927.0	Mm.386774	NM_009395	ENSMUSG00000017615	Tnfaip1	Bacurd2|Edp-1|Edp1|Tnfip1	tumor necrosis factor, alpha-induced protein 1 (endothelial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22389288-4	chr9	22388802	22389802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028390)	promoter-TSS (NM_028390)	-96.0	NM_028390	68743.0	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122821388-4	chr7	122820879	122821879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	149080.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69579377-4	chr11	69578879	69579879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144824)	promoter-TSS (NM_144824)	-55.0	NM_144824	216853.0	Mm.31586	NM_144824	ENSMUSG00000041346	Wrap53	BC021790|Wdr79	WD repeat containing, antisense to Trp53	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-60974958-4	chr1	60974462	60975462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2952.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	25.0	49.5	27.5	18.5	71.0	32.0
Merged-chr11-70453430-5	chr11	70452953	70453953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_151497)	TTS (NR_151497)	1522.0	NM_025397	66172.0	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45062555-7	chr7	45062019	45063019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022999)	promoter-TSS (NM_022999)	90.0	NM_025533	66394.0	Mm.272139	NM_025533	ENSMUSG00000003421	Nosip	2310061K06Rik|CGI-25	nitric oxide synthase interacting protein	protein-coding	36.0	93.0	64.0	54.0	85.5	92.0
Merged-chr15-81361032-8	chr15	81360507	81361507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011399)	promoter-TSS (NM_011399)	-242.0	NM_011399	20524.0	Mm.222536	NM_011399	ENSMUSG00000022404	Slc25a17	34kDa|47kDa|PMP34|Pmp47	solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-118389383-4	chr1	118388897	118389897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001359346, exon 1 of 38)	5' UTR (NM_001359346, exon 1 of 38)	339.0	NM_001359334	76707.0	Mm.138740	NM_029709	ENSMUSG00000064302	Clasp1	1700030C23Rik|5730583A19Rik|B130045P17Rik|CLASP1alpha	CLIP associating protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85710791-4	chr12	85710288	85711288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24068.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128345067-4	chr10	128344550	128345550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026444, intron 1 of 10)	intron (NM_026444, intron 1 of 10)	7323.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24405813-2	chr2	24405313	24406313	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177611, exon 16 of 17)	exon (NM_177611, exon 16 of 17)	19197.0	NM_001355232	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6451410-4	chr2	6450898	6451898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98662.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-15967467-4	chr7	15966957	15967957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153068)	promoter-TSS (NM_153068)	78.0	NM_153068	259300.0	Mm.138215	NM_153068	ENSMUSG00000074364	Ehd2	BC027084|C130052H20Rik	EH-domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83441709-4	chr6	83441219	83442219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183138)	promoter-TSS (NM_183138)	-36.0	NR_028382	320775.0	Mm.434334	NR_028382	ENSMUSG00000051844	B230319C09Rik	-	RIKEN cDNA B230319C09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105012720-4	chr5	105012213	105013213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR10_RN|LTR|ERVK	-29996.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70010548-4	chr12	70010041	70011041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081453)	TTS (NM_001081453)	-23539.0	NM_022028	64010.0	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	1.5	6.5	11.0	7.5	25.0	6.5
Merged-chr14-120137926-4	chr14	120137439	120138439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95504.0	NM_001001490	239283.0	Mm.138520	NM_001001490	ENSMUSG00000044819	Oxgr1	Cysltr3|Gm299|Gpr80|Gpr99|P2Y15	oxoglutarate (alpha-ketoglutarate) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-116972289-4	chr2	116971788	116972788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72136.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53807498-2	chr19	53806998	53807998	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170847, intron 1 of 13)	MLT1D|LTR|ERVL-MaLR	-84733.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	1.5	1.0	2.5	0.0	0.0	0.0
Merged-chr7-12803620-4	chr7	12803114	12804114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026046)	TTS (NM_026046)	15246.0	NM_026046	67230.0	Mm.333574	NM_026046	ENSMUSG00000057894	Zfp329	2810439M05Rik|4632409L22Rik|ZNF329	zinc finger protein 329	protein-coding	7.5	21.5	19.5	11.0	21.0	21.5
Merged-chr2-29624476-4	chr2	29623964	29624964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	4744.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-71239750-4	chr10	71239228	71240228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1684.0	NM_009360	21780.0	Mm.229292	NM_009360	ENSMUSG00000003923	Tfam	AI661103|Hmgts|mtTFA|tsHMG	transcription factor A, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6827970-4	chr17	6827501	6828501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-45221.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	49.0	127.5	103.5	51.5	98.0	102.5
Merged-chr9-121758478-2	chr9	121757978	121758978	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033503, exon 1 of 1)	non-coding (NR_033503, exon 1 of 1)	1465.0	NR_033503	320301.0	Mm.373883	NR_033503		E530011L22Rik	-	RIKEN cDNA E530011L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17394184-3	chr17	17393681	17394681	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025934, exon 10 of 10)	3' UTR (NM_025934, exon 10 of 10)	-8505.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	33.0	86.5	65.5	38.0	58.5	40.0
Merged-chr11-101176420-2	chr11	101175920	101176920	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007721)	promoter-TSS (NM_007721)	303.0	NM_016782	53321.0	Mm.474527	NM_016782	ENSMUSG00000017167	Cntnap1	AI841080|Caspr|NCP1|Nrxn4|p190|shm	contactin associated protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118910644-5	chr14	118910137	118911137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360412, intron 8 of 22)	L1MC3|LINE|L1	12154.0	NM_001360413	66573.0	Mm.87456	NM_025943	ENSMUSG00000042156	Dzip1	2510025K24Rik|2810422M04Rik	DAZ interacting protein 1	protein-coding	14.5	25.0	7.0	6.5	5.0	8.5
Merged-chr11-98148930-4	chr11	98148437	98149437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028149, intron 1 of 14)	intron (NM_028149, intron 1 of 14)	679.0	NM_028149	72194.0	Mm.218350	NM_028149	ENSMUSG00000020883	Fbxl20	2610511F20Rik|4632423N09Rik|AI849362|AL117906|C86145|Fbl2|Scr|mKIAA4147	F-box and leucine-rich repeat protein 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17748239-4	chr12	17747747	17748747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	57438.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	4.5	10.5	2.0	0.5	10.0	3.5
Merged-chr12-35049251-3	chr12	35048746	35049746	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	2057.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	47.0	123.5	70.0	50.5	119.5	84.0
Merged-chr17-47503262-2	chr17	47502762	47503762	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022015)	promoter-TSS (NM_022015)	-971.0	NM_022015	63856.0	Mm.275901	NM_022015	ENSMUSG00000023980	Taf8	AW260255|Tbn	TATA-box binding protein associated factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36875040-4	chr16	36874536	36875536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134111)	promoter-TSS (NM_134111)	-210.0	NM_134111	106389.0	Mm.432078	NM_134111	ENSMUSG00000022838	Eaf2	AW048865|FESTA-L|FESTA-S|Festa|Traits|U19	ELL associated factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-4432473-4	chr10	4431970	4432970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025343)	promoter-TSS (NM_025343)	-82.0	NM_001358796	66084.0	Mm.153111	NM_025343	ENSMUSG00000019763	Rmnd1	0610042C05Rik|AA408137|AI462664|AW536662	required for meiotic nuclear division 1 homolog	protein-coding	84.5	132.5	87.0	104.0	151.0	119.5
Merged-chr10-81402856-2	chr10	81402356	81403356	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 8 of 8)	intron (NM_026756, intron 8 of 8)	-6719.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-115695790-4	chr3	115695290	115696290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19265.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	82.5	168.0	101.0	83.0	110.5	79.0
Merged-chr7-127512972-4	chr7	127512470	127513470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024331)	promoter-TSS (NR_024331)	-101.0	NR_024331	629159.0	Mm.256720	NR_024331	ENSMUSG00000101225	1700008J07Rik	AW048743	RIKEN cDNA 1700008J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38348759-4	chr18	38348257	38349257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9764.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110421151-4	chr5	110420646	110421646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142642, intron 2 of 18)	intron (NM_001142642, intron 2 of 18)	27357.0	NM_001317042	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	48.0	61.5	46.5	36.5	90.0	42.0
Merged-chr7-4739856-4	chr7	4739349	4740349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001115018)	promoter-TSS (NM_001115018)	-278.0	NM_146177	232811.0	Mm.247844	NM_146177	ENSMUSG00000059851	Kmt5c	BC024816|Suv4-20h2|Suv420h2	lysine methyltransferase 5C	protein-coding	17.0	44.5	24.5	8.5	29.0	27.0
Merged-chr9-46283010-4	chr9	46282509	46283509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146000)	promoter-TSS (NM_146000)	-3.0	NM_146000	215051.0	Mm.32648	NM_146000	ENSMUSG00000032077	Bud13	AV305342|D030060M11Rik	BUD13 homolog	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr1-45865922-4	chr1	45865427	45866427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59667.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-63247687-4	chr10	63247206	63248206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359484, intron 3 of 22)	intron (NM_001359484, intron 3 of 22)	3909.0	NM_001359484	67345.0	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-45332453-2	chr8	45331953	45332953	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133969, intron 1 of 10)	intron (NM_133969, intron 1 of 10)	743.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141949683-4	chr7	141949175	141950175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276763)	promoter-TSS (NM_001276763)	-76.0	NM_001009930	75770.0	Mm.274868	NM_029426	ENSMUSG00000053046	Brsk2	4833424K13Rik|SAD-A|SADA	BR serine/threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44602294-4	chr10	44601798	44602798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143550.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47788062-1	chr6	47787562	47788562	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	15590.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	43.5	89.0	77.0	43.0	91.0	65.0
Merged-chr4-138216735-2	chr4	138216235	138217235	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122897)	promoter-TSS (NM_001122897)	123.0	NM_001285478	15441.0	Mm.348429	NM_010470	ENSMUSG00000028759	Hp1bp3	Hp1bp74	heterochromatin protein 1, binding protein 3	protein-coding	4.5	13.0	24.0	17.0	17.5	37.0
Merged-chr14-121906612-4	chr14	121906098	121907098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 2 of 8)	intron (NM_026861, intron 2 of 8)	9176.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	54.5	219.0	78.0	57.0	190.0	96.0
Merged-chr1-51477772-6	chr1	51477228	51478228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310549, intron 1 of 5)	intron (NM_001310549, intron 1 of 5)	671.0	NM_001310548	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	48.0	181.0	114.5	49.0	166.0	103.5
Merged-chr11-79259026-4	chr11	79258536	79259536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-4341.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46524343-4	chr19	46523835	46524835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22687.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35219764-4	chr17	35219289	35220289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010909)	TTS (NM_010909)	-14438.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	17.0	36.0	43.0	34.0	57.0	39.5
Merged-chr17-44103961-4	chr17	44103482	44104482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357996, intron 1 of 3)	intron (NM_001357996, intron 1 of 3)	1826.0	NM_199016	224794.0	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	50.0	127.5	35.5	50.0	98.5	47.5
Merged-chr14-60251495-4	chr14	60251004	60252004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170591)	promoter-TSS (NM_170591)	-25.0	NM_001362439	71844.0	Mm.258051	NM_170591	ENSMUSG00000114797	Nupl1	1700017F11Rik|Nup58|mKIAA0410	nucleoporin like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3712664-4	chr4	3712163	3713163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	-2301.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	84.0	178.0	114.5	90.5	169.0	129.5
Merged-chr8-11556949-3	chr8	11556524	11557524	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011919, exon 1 of 2)	exon (NM_011919, exon 1 of 2)	567.0	NM_011919	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49855015-2	chr16	49854515	49855515	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010581)	promoter-TSS (NM_010581)	-639.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102980657-4	chr14	102980134	102981134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177715, exon 1 of 1)	3' UTR (NM_177715, exon 1 of 1)	1998.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-39065572-4	chr2	39065076	39066076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029793)	promoter-TSS (NM_029793)	-35.0	NM_029793	76899.0	Mm.131098	NM_029793	ENSMUSG00000026754	Golga1	0710001G09Rik|2210418B03Rik|AW107649|Golgi97|awag|golgin-97	golgi autoantigen, golgin subfamily a, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6982684-2	chr19	6982184	6983184	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001185164, exon 7 of 7)	3' UTR (NM_001185164, exon 7 of 7)	-2220.0	NM_001166368	14227.0	Mm.4234	NM_008020	ENSMUSG00000056629	Fkbp2	mFKBP13|mFKBP2	FK506 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85596091-4	chr12	85595599	85596599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3006.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105825836-4	chr3	105825322	105826322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10255.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	25.5	39.5	20.0	12.0	51.5	31.0
Merged-chr11-3168096-1	chr11	3167596	3168596	+	1000.0	f1_balb.idr	intron (NM_030207, intron 7 of 32)	RLTR21|LTR|ERVK	25367.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98816238-4	chr7	98815744	98816744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-18868.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-72415787-4	chr1	72415286	72416286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	108365.0	NM_001357519	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31756612-3	chr16	31756111	31757111	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252436, intron 1 of 22)	intron (NM_001252436, intron 1 of 22)	2261.0	NM_001252436	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41983672-2	chr19	41983172	41984172	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	1909.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110527881-4	chr9	110527380	110528380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4717.0	NM_001081340	235626.0	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60733921-4	chr10	60733401	60734401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 2 of 5)	intron (NM_023596, intron 2 of 5)	18881.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45031931-4	chr13	45031435	45032435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29839.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	2.5	3.5	11.5	2.5	3.5	11.0
Merged-chr4-48473463-4	chr4	48472959	48473959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355741)	promoter-TSS (NM_001355741)	4.0	NM_172304	269536.0	Mm.272025	NM_172304	ENSMUSG00000028345	Tex10	2610206N19Rik|2810462N03Rik|BC006867	testis expressed gene 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88346110-4	chr10	88345590	88346590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 1 of 6)	intron (NM_027878, intron 1 of 6)	10985.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25637937-4	chr15	25637416	25638416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 1 of 40)	intron (NM_019472, intron 1 of 40)	15366.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70003266-4	chr8	70002770	70003770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6886.0	NM_145596	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	94.5	241.0	113.5	130.0	223.0	134.5
Merged-chr12-102646764-4	chr12	102646256	102647256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 2 of 9)	MIR3|SINE|MIR	38264.0	NR_035457	100316812.0		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-59219006-4	chr12	59218539	59219539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033156, exon 1 of 4)	exon (NM_001033156, exon 1 of 4)	444.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117055321-4	chr8	117054840	117055840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 13 of 42)	MIR|SINE|MIR	27109.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-27186753-2	chr8	27186253	27187253	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12107.0	NM_001080813	75767.0	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88435521-4	chr17	88435038	88436038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5166.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	0.0	2.0	1.5	0.0	0.0	10.5
Merged-chr7-28375697-4	chr7	28375203	28376203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-3041.0	NM_001083912	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	27.5	70.0	59.0	26.5	105.0	64.0
Merged-chr9-100376826-3	chr9	100376326	100377326	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109647.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	5.0	9.0	14.5	10.5	29.0	24.0
Merged-chr19-6365812-2	chr19	6365312	6366312	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360393, intron 2 of 11)	intron (NM_001360393, intron 2 of 11)	2122.0	NR_122118	22668.0	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121987486-4	chr14	121986996	121987996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 6 of 8)	intron (NM_026861, intron 6 of 8)	-22303.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	16.0	10.0	3.5	5.5	17.5	4.0
Merged-chr10-68723830-4	chr10	68723346	68724346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177794)	promoter-TSS (NM_177794)	100.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-33824968-2	chr6	33824468	33825468	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 12 of 17)	intron (NM_009148, intron 12 of 17)	-204480.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15564387-4	chr17	15563868	15564868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1045.0	NM_144809	213389.0	Mm.215162	NM_144809	ENSMUSG00000051977	Prdm9	BC012016|Dsbc1|G1-419-29|Meisetz|PRDM9-B|Rcr1|repro7	PR domain containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102978002-4	chr2	102977495	102978495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76330.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9931283-4	chr19	9930775	9931775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31742.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	77.0	172.5	104.0	80.5	247.0	147.5
Merged-chr16-93832200-4	chr16	93831701	93832701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045529)	promoter-TSS (NM_001045529)	80.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	7.0	3.5	3.5	3.5	0.0	3.5
Merged-chr5-32745893-4	chr5	32745401	32746401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347332, intron 1 of 8)	intron (NM_001347332, intron 1 of 8)	441.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	5.5	21.5	17.0	7.5	29.0	12.0
Merged-chr4-133463308-3	chr4	133462816	133463816	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16817.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	8.5	19.5	15.5	129.5	131.0	114.5
Merged-chr1-136346103-4	chr1	136345600	136346600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347110)	promoter-TSS (NM_001347110)	4.0	NM_001347109	67886.0	Mm.144143	NM_001081360	ENSMUSG00000041570	Camsap2	1600013L13Rik|4930541M15Rik|Camsap1l1|mKIAA1078	calmodulin regulated spectrin-associated protein family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99360349-4	chr5	99359835	99360835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-107408.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170282617-4	chr1	170282127	170283127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012009, intron 2 of 3)	intron (NM_012009, intron 2 of 3)	5309.0	NR_153837	26904.0	Mm.57009	NM_012009	ENSMUSG00000102418	Sh2d1b1	EAT-2|EAT-2A|Eat2|Eat2a|Sh2d1b	SH2 domain containing 1B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96596000-2	chr3	96595500	96596500	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024851)	promoter-TSS (NM_001024851)	-636.0	NM_001024851	545554.0	Mm.267664	NM_001024851	ENSMUSG00000049097	Ankrd34a	AW060394|Ankrd34	ankyrin repeat domain 34A	protein-coding	0.0	4.5	1.5	0.0	4.0	2.5
Merged-chr14-20929289-4	chr14	20928790	20929790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009502)	promoter-TSS (NM_009502)	-108.0	NM_009502	22330.0	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding	8.5	25.5	39.0	18.5	51.5	39.0
Merged-chr15-78599341-4	chr15	78598834	78599834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028195, intron 1 of 12)	intron (NM_028195, intron 1 of 12)	2287.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	7.0	35.0	5.5	6.0	17.0	14.5
Merged-chr3-95134011-4	chr3	95133518	95134518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153121)	promoter-TSS (NM_153121)	-6.0	NM_001163573	69269.0	Mm.182944	NM_027013	ENSMUSG00000092607	Scnm1	3110001I17Rik|Scnm1-ps	sodium channel modifier 1	protein-coding	4.5	23.0	5.5	18.5	33.5	18.0
Merged-chr7-110616023-4	chr7	110615537	110616537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1117.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-37028872-4	chr17	37028362	37029362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5464.0	NM_010814	17441.0	Mm.210857	NM_010814	ENSMUSG00000076439	Mog	B230317G11Rik	myelin oligodendrocyte glycoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73067621-4	chr15	73067129	73068129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6425.0	NM_001164643	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	9.0	31.5	14.5	14.0	25.5	16.5
Merged-chr12-111432324-4	chr12	111431808	111432808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028807)	TTS (NM_028807)	-10353.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155831550-4	chr4	155830972	155831972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_025338, exon 1 of 4)	5' UTR (NM_025338, exon 1 of 4)	203.0	NM_025338	66077.0	Mm.28999	NM_025338	ENSMUSG00000065990	Aurkaip1	0610033H09Rik|Aip|Akip|MRP-S38	aurora kinase A interacting protein 1	protein-coding	81.5	256.5	222.5	34.5	135.5	107.5
Merged-chr9-114380070-2	chr9	114379570	114380570	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019922, intron 4 of 6)	intron (NM_019922, intron 4 of 6)	10642.0	NM_019922	56693.0	Mm.20904	NM_019922	ENSMUSG00000032431	Crtap	5730529N23Rik|CASP|Leprel3|P3h5	cartilage associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87511153-4	chr6	87510659	87511659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	-14832.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	59.5	121.5	93.0	31.0	55.5	72.5
Merged-chr10-98958940-4	chr10	98958450	98959450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	43798.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-113613710-2	chr7	113613210	113614210	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48723.0	NR_126544	69295.0	Mm.396150	NR_126544	ENSMUSG00000084984	Far1os	1700006P19Rik	fatty acyl CoA reductase 1, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27442420-4	chr2	27441940	27442940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360790)	promoter-TSS (NM_001360790)	4.0	NM_001360792	100504116.0	Mm.36529	NM_001360790		Brd3os	A230069D13|D2Bwg1423e|Gm20071	bromodomain containing 3, opposite strand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49957119-4	chr16	49956625	49957625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153658, intron 1 of 1)	intron (NR_153658, intron 1 of 1)	1295.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77619841-4	chr10	77619324	77620324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14_RN|LTR|ERV1	-2497.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-140945236-2	chr7	140944736	140945736	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153832, intron 5 of 11)	intron (NR_153832, intron 5 of 11)	3845.0	NM_145387	212974.0	Mm.260139	NM_145387	ENSMUSG00000062031	Pgghg	5730511L01Rik|Athl1|BC023151	protein glucosylgalactosylhydroxylysine glucosidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163417460-2	chr2	163416960	163417960	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025699, intron 1 of 3)	intron (NM_025699, intron 1 of 3)	2010.0	NM_025699	66680.0	Mm.25119	NM_025699	ENSMUSG00000035399	Oser1	3230401D17Rik|AI256769|Perit1	oxidative stress responsive serine rich 1	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr4-99163729-4	chr4	99163227	99164227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30207.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27258699-4	chr7	27258168	27259168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010950)	promoter-TSS (NM_010950)	-93.0	NM_010950	18223.0	Mm.458153	NM_010950	ENSMUSG00000063160	Numbl	nbl	numb-like	protein-coding	9.0	15.5	10.5	3.5	6.0	8.5
Merged-chr8-83741281-4	chr8	83740773	83741773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163031)	promoter-TSS (NM_001163031)	38.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	123.0	351.0	277.5	177.0	307.5	259.5
Merged-chr1-170997899-4	chr1	170997392	170998392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21034.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-117880824-2	chr6	117880324	117881324	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger6a|DNA|TcMar-Tigger	17943.0	NM_001001792	22685.0	Mm.249661	NM_008616	ENSMUSG00000042097	Zfp239	Mok-2|Mok2|Znf239	zinc finger protein 239	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101540607-4	chr13	101540129	101541129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143049.0	NR_046187	78136.0	Mm.399065	NR_046187		4922502H24Rik	-	RIKEN cDNA 4922502H24 gene	ncRNA	22.5	51.5	12.0	3.0	28.0	26.5
Merged-chr7-31156484-4	chr7	31155996	31156996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-5325.0	NR_153431	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80779502-4	chr7	80779005	80780005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	23826.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	193.5	425.0	293.5	112.5	374.5	260.5
Merged-chr5-134234030-2	chr5	134233530	134234530	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4405.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21785216-4	chr5	21784736	21785736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009584)	promoter-TSS (NM_009584)	-47.0	NM_011188	19181.0	Mm.2462	NM_011188	ENSMUSG00000028932	Psmc2	-	proteasome (prosome, macropain) 26S subunit, ATPase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-74462756-4	chr13	74462245	74463245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31205.0	NM_146231	235956.0		NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-52603881-4	chr12	52603378	52604378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	U6|snRNA|snRNA	-1556.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	66.5	157.5	142.5	68.5	149.0	144.5
Merged-chr10-37320243-4	chr10	37319729	37320729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-181303.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27708663-4	chr15	27708157	27709157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27115.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4920525-4	chr18	4920021	4921021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	108035.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-53925611-4	chr10	53925113	53926113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 8 of 12)	intron (NM_008548, intron 8 of 12)	150183.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80466835-2	chr18	80466335	80467335	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 1 of 12)	B1_Mus1|SINE|Alu	2832.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	4.0	1.5	2.5	3.5	12.5	0.5
Merged-chr14-31166260-4	chr14	31165792	31166792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138672, intron 1 of 68)	intron (NM_138672, intron 1 of 68)	2349.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-41409444-2	chr3	41408944	41409944	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83755.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100493331-4	chr7	100492811	100493811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011671)	promoter-TSS (NM_011671)	-47.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	63.0	87.0	68.5	53.0	138.0	109.5
Merged-chr17-5514563-2	chr17	5514063	5515063	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	21963.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74387034-4	chr1	74386531	74387531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013612)	TTS (NM_013612)	-4578.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146120343-4	chr6	146119854	146120854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 55 of 56)	intron (NM_019923, intron 55 of 56)	186232.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145242937-4	chr4	145242461	145243461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	3909.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128747818-4	chr10	128747323	128748323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253704)	promoter-TSS (NM_001253704)	-56.0	NM_030100	78428.0	Mm.27358	NM_030100	ENSMUSG00000064030	Pym1	A030010B05Rik|Pym|Wibg	PYM homolog 1, exon junction complex associated factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120885194-3	chr9	120884699	120885699	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30051.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	0.0	2.5	1.5	9.5	5.5	8.0
Merged-chr1-170959976-4	chr1	170959484	170960484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010187)	TTS (NM_010187)	16087.0	NM_010187	14130.0	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-53667507-4	chr9	53667009	53668009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027807)	promoter-TSS (NM_027807)	-2.0	NM_027807	75717.0	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	3.0	15.5	7.5	3.0	14.5	7.5
Merged-chr11-115413383-4	chr11	115412893	115413893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347645)	TTS (NM_001347645)	6526.0	NM_027862	71679.0	Mm.371641	NM_027862	ENSMUSG00000034566	Atp5h	0610009D10Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D	protein-coding	62.5	142.0	124.5	64.0	107.5	83.5
Merged-chr8-46819954-2	chr8	46819454	46820454	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008391, intron 6 of 8)	MT2B1|LTR|ERVL	80209.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21753806-5	chr13	21753199	21754199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178201)	promoter-TSS (NM_178201)	213.0	NM_178183	319169.0	Mm.370338	NM_178183	ENSMUSG00000063021	Hist1h2ak	-	histone cluster 1, H2ak	protein-coding	5.5	36.0	29.5	17.5	114.0	49.0
Merged-chr9-108691562-4	chr9	108691054	108692054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008924)	promoter-TSS (NM_008924)	-589.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119926658-4	chr8	119926167	119927167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009462, intron 1 of 13)	B1_Mur4|SINE|Alu	16307.0	NM_001310630	22224.0	Mm.256910	NM_009462	ENSMUSG00000031826	Usp10	2610014N07Rik|UBPO|Uchrp|mKIAA0190	ubiquitin specific peptidase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-70287918-4	chr10	70287415	70288415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42639.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24443200-1	chr7	24442700	24443700	+	1000.0	f0_balb.idr	intron (NM_199013, intron 1 of 2)	intron (NM_199013, intron 1 of 2)	2482.0	NM_199013	210145.0	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	2.0	20.5	5.5	0.0	16.5	5.5
Merged-chr1-30873849-4	chr1	30873319	30874319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-10563.0	NM_001081080	213109.0	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik	PHD finger protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-39373274-4	chr2	39372780	39373780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-146931.0	NM_024209	67857.0	Mm.389242	NM_024209	ENSMUSG00000026753	Ppp6c	2310003C10Rik|Pp6C	protein phosphatase 6, catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30696092-4	chr13	30695600	30696600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134068, intron 3 of 7)	intron (NM_134068, intron 3 of 7)	36041.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88746444-4	chr3	88745955	88746955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018804, exon 4 of 4)	3' UTR (NM_018804, exon 4 of 4)	26144.0	NM_018804	229521.0	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	5.5	8.5	16.5	4.0	12.5	9.5
Merged-chr1-106695953-4	chr1	106695449	106696449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009741, intron 1 of 1)	ORR1F|LTR|ERVL-MaLR	18341.0	NM_009741	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20741078-4	chr11	20740580	20741580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181411, intron 1 of 8)	CpG	476.0	NM_001290545	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	168.5	306.5	264.5	137.0	234.0	193.5
Merged-chr17-73973734-4	chr17	73973216	73974216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23520.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57537064-2	chr6	57536564	57537564	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME3A|LINE|L1	-1638.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102502600-4	chr5	102502121	102503121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146161, intron 1 of 8)	intron (NM_146161, intron 1 of 8)	21230.0	NM_029270	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-69417359-4	chr17	69416902	69417902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_026848, exon 1 of 1)	non-coding (NR_026848, exon 1 of 1)	955.0	NR_026848	77533.0	Mm.266592	NR_026848		C030034I22Rik	-	RIKEN cDNA C030034I22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99143395-4	chr7	99142873	99143873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2229.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	36.0	104.0	67.5	41.5	108.5	73.0
Merged-chr10-84338943-4	chr10	84338435	84339435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	101536.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113269997-4	chr13	113269498	113270498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60339.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54073340-2	chr13	54072840	54073840	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027324, intron 1 of 10)	intron (NM_027324, intron 1 of 10)	1495.0	NM_027324	14057.0	Mm.134191	NM_027324	ENSMUSG00000021474	Sfxn1	2810002O05Rik|A930015P12Rik|f	sideroflexin 1	protein-coding	7.0	7.5	5.0	0.0	12.0	9.5
Merged-chr15-84321784-4	chr15	84321304	84322304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2916.0	NM_022321	64099.0	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	3.0	0.0	0.5	0.5	1.5	3.0
Merged-chr13-60627145-4	chr13	60626637	60627637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	24926.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97188100-4	chr11	97187591	97188591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008379)	promoter-TSS (NM_008379)	-199.0	NM_008379	16211.0	Mm.251013	NM_008379	ENSMUSG00000001440	Kpnb1	AA409963|IPOB|Impnb	karyopherin (importin) beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114806180-4	chr5	114805666	114806666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026718)	TTS (NM_026718)	7810.0	NR_027818	66236.0	Mm.268546	NR_027817	ENSMUSG00000072694	1500011B03Rik	AI415201|AV141149|AW556386	RIKEN cDNA 1500011B03 gene	ncRNA	0.0	0.0	0.0	2.0	18.5	8.0
Merged-chr17-80224512-4	chr17	80224063	80225063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355458, exon 1 of 3)	5' UTR (NM_001355458, exon 1 of 3)	112.0	NM_001355458	67242.0	Mm.279985	NM_026053	ENSMUSG00000055760	Gemin6	2610019B15Rik|2810470M17Rik	gem nuclear organelle associated protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60285642-2	chr10	60285142	60286142	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146124, intron 1 of 13)	intron (NM_001146124, intron 1 of 13)	1181.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32111782-4	chr12	32111291	32112291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50512.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	22.0	35.5	24.0	8.5	30.0	21.5
Merged-chr18-58699314-1	chr18	58698814	58699814	+	1000.0	f0_balb.idr	Intergenic	Lx7|LINE|L1	39832.0	NM_025478	66307.0	Mm.182574	NM_025478	ENSMUSG00000024601	Isoc1	2610034N03Rik	isochorismatase domain containing 1	protein-coding	3.5	0.0	3.5	3.0	1.0	3.0
Merged-chr12-110850425-6	chr12	110849928	110850928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001199785, exon 1 of 7)	exon (NM_001199785, exon 1 of 7)	149.0	NM_028365	72805.0	Mm.443524	NM_028365	ENSMUSG00000021271	Zfp839	2810455K09Rik	zinc finger protein 839	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76618041-2	chr12	76617541	76618541	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013675, intron 15 of 35)	intron (NM_013675, intron 15 of 35)	-70116.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95637813-5	chr9	95637284	95638284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_029620, exon 1 of 9)	5' UTR (NM_029620, exon 1 of 9)	156.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118479728-4	chr2	118479206	118480206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009273)	promoter-TSS (NM_009273)	-10.0	NM_009273	20813.0	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	90.0	210.0	159.5	84.0	177.5	128.5
Merged-chr10-63386591-4	chr10	63386095	63387095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013888)	promoter-TSS (NM_013888)	32.0	NM_013888	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125669052-2	chr8	125668552	125669552	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028908)	promoter-TSS (NM_028908)	-766.0	NM_028908	74393.0	Mm.41709	NM_028908	ENSMUSG00000050930	Map10	4933403G14Rik|AI835009|mKIAA1383	microtubule-associated protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76255252-4	chr12	76254757	76255757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138745)	promoter-TSS (NM_138745)	25.0	NM_138745	108156.0	Mm.29584	NM_138745	ENSMUSG00000021048	Mthfd1	Dcs|E430024A07Rik|Mthfd	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92419204-4	chr16	92418698	92419698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-19120.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-72837452-4	chr17	72836963	72837963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357370)	promoter-TSS (NM_001357370)	-73.0	NM_001357369	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	68.0	334.0	245.0	112.5	429.5	270.0
Merged-chr5-43114131-3	chr5	43113631	43114631	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119332.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	6.5	13.0	10.0	31.0	14.0	13.0
Merged-chr18-32162943-4	chr18	32162442	32163442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011946)	promoter-TSS (NM_011946)	-147.0	NM_011946	26405.0	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43679740-4	chr19	43679237	43680237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4559.0	NR_045645	100502982.0	Mm.313570	NR_045645		BC037704	-	cDNA sequence BC037704	ncRNA	15.0	53.5	24.0	19.0	50.5	21.5
Merged-chr7-127296263-4	chr7	127295769	127296769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008400)	promoter-TSS (NM_008400)	9.0	NM_001253874	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54117239-7	chr6	54116740	54117740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	77308.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	33.5	95.0	60.5	37.0	71.5	71.5
Merged-chr8-20297542-4	chr8	20297044	20298044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030708)	promoter-TSS (NR_030708)	-112.0	NR_030708	547150.0	Mm.359054	NR_030708	ENSMUSG00000071796	6820431F20Rik	-	cadherin 11 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115398205-4	chr8	115397708	115398708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	308686.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75086255-4	chr8	75085738	75086738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7380.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104992873-4	chr3	104992364	104993364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31155.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42779795-4	chr19	42779338	42780338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001346703, exon 1 of 20)	5' UTR (NM_001346703, exon 1 of 20)	140.0	NM_001346703	192236.0	Mm.218381	NM_019424	ENSMUSG00000025188	Hps1	6030422N11Rik|BB405864|Gm21361|Hps|ep	HPS1, biogenesis of lysosomal organelles complex 3 subunit 1	protein-coding	162.5	436.0	326.0	87.0	356.5	267.0
Merged-chr5-33820398-6	chr5	33819851	33820851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-22761.0	NM_175231	107823.0	Mm.19892	NM_175231	ENSMUSG00000057406	Nsd2	5830445G22Rik|9430010A17Rik|AW555663|C130020C13Rik|D030027O06Rik|D930023B08Rik|MMSET|Whsc1|Whsc1l|mKIAA1090	nuclear receptor binding SET domain protein 2	protein-coding	0.0	1.5	0.0	0.0	0.0	5.0
Merged-chr11-97629804-4	chr11	97629294	97630294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175332)	promoter-TSS (NM_175332)	-78.0	NM_175332	103551.0	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146805547-2	chr5	146805047	146806047	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10591.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	25.0	56.5	36.5	14.0	68.0	36.0
Merged-chr13-37633168-4	chr13	37632649	37633649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-192889.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153143548-2	chr2	153143048	153144048	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 10 of 12)	L2c|LINE|L2	-17753.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68863949-4	chr11	68863439	68864439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10808.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32292183-4	chr12	32291666	32292666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83517.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80387236-4	chr7	80386729	80387729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010194, exon 2 of 19)	exon (NM_010194, exon 2 of 19)	717.0	NM_010194	14159.0	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	46.5	162.5	119.5	54.5	120.0	83.0
Merged-chr14-120910979-4	chr14	120910476	120911476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023579)	promoter-TSS (NM_023579)	-218.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24724450-4	chr17	24723933	24724933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026684)	promoter-TSS (NM_026684)	-45.0	NM_026684	68342.0	Mm.1129	NM_026684	ENSMUSG00000040048	Ndufb10	0610011B04Rik|22kDa|PDSW	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10	protein-coding	24.0	71.0	53.5	23.0	78.0	35.0
Merged-chr4-66796938-4	chr4	66796454	66797454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30597.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	5.5	11.0	9.0	11.5	8.5	15.0
Merged-chr17-5316735-4	chr17	5316227	5317227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 11 of 19)	intron (NM_001085355, intron 11 of 19)	102040.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8874179-4	chr10	8873681	8874681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	11889.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	162.5	358.0	279.5	159.0	323.0	259.0
Merged-chr10-117711538-2	chr10	117711038	117712038	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001288586)	promoter-TSS (NM_001288586)	-780.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.0	2.0	0.0	0.0	2.0	2.5
Merged-chr5-125361213-4	chr5	125360713	125361713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-20119.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-16470055-4	chr5	16469554	16470554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83441.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4894389-4	chr16	4893883	4894883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 1 of 17)	intron (NM_001357062, intron 1 of 17)	8283.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59238797-4	chr4	59238264	59239264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21287.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	19.5	44.5	46.5	29.5	56.5	73.0
Merged-chr16-17284987-2	chr16	17284487	17285487	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001983, intron 45 of 54)	intron (NM_001001983, intron 45 of 54)	8687.0	NM_177473	224019.0	Mm.246388	NM_177473	ENSMUSG00000055692	Tmem191c	4933405M22Rik|D16Bwg1494e|MNCb-4137	transmembrane protein 191C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108876203-4	chr6	108875700	108876700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47559.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0.0	1.5	0.0	0.0	1.5	1.0
Merged-chr1-140261358-4	chr1	140260865	140261865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081027, intron 1 of 27)	intron (NM_001081027, intron 1 of 27)	15108.0	NM_001081027	240776.0	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-166430091-4	chr1	166429598	166430598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20270.0	NM_175170	71592.0	Mm.192094	NM_175170	ENSMUSG00000040596	Pogk	9130401E23Rik|BASS2|mKIAA1513	pogo transposable element with KRAB domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126422462-4	chr8	126421976	126422976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174987)	promoter-TSS (NM_174987)	-25.0	NM_174987	67892.0	Mm.31946	NM_174987	ENSMUSG00000051671	Coa6	1810063B05Rik|AI447995	cytochrome c oxidase assembly factor 6	protein-coding	9.0	28.5	14.0	11.0	25.5	18.5
Merged-chr17-64615640-4	chr17	64615147	64616147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	13998.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70433385-4	chr11	70432894	70433894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145429, intron 1 of 14)	intron (NM_145429, intron 1 of 14)	814.0	NM_001271358	216869.0	Mm.203747	NM_145429	ENSMUSG00000060216	Arrb2	AI326910|AW122872|Arr3	arrestin, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-151157032-2	chr4	151156532	151157532	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 7 of 23)	intron (NM_001081557, intron 7 of 23)	67462.0	NM_001308446	105704528.0	Mm.415128	NM_001308446	ENSMUSG00000078491	Gm13090	-	predicted gene 13090	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115707950-4	chr8	115707466	115708466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1072.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	7.0	30.0	34.0	7.0	36.5	33.5
Merged-chr5-5420221-6	chr5	5419684	5420684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-39933.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-94545018-4	chr15	94544530	94545530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029926, intron 1 of 11)	RLTR42-int|LTR|ERVK	1370.0	NM_029926	266632.0	Mm.422858	NM_029926	ENSMUSG00000059883	Irak4	8430405M07Rik|9330209D03Rik|IRAK-4|NY-REN-64	interleukin-1 receptor-associated kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55237153-4	chr1	55236670	55237670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175439)	promoter-TSS (NM_175439)	-7.0	NM_175439	212679.0	Mm.19223	NM_175439	ENSMUSG00000046994	Mars2	C730026E21Rik|MetRS	methionine-tRNA synthetase 2 (mitochondrial)	protein-coding	0.0	7.0	4.5	2.5	1.0	4.5
Merged-chr6-129401226-2	chr6	129400726	129401726	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019985, intron 2 of 5)	intron (NM_019985, intron 2 of 5)	3929.0	NM_001204239	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8640312-2	chr12	8639812	8640812	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-33822.0	NM_001160221	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-28805877-2	chr3	28805377	28806377	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_154889, intron 1 of 3)	intron (NR_154889, intron 1 of 3)	369.0	NM_026517	68028.0	Mm.21724	NM_026517	ENSMUSG00000039221	Rpl22l1	3110001N18Rik|AU041196	ribosomal protein L22 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132576367-4	chr7	132575870	132576870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016978)	promoter-TSS (NM_016978)	28.0	NM_016978	18242.0	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102608272-4	chr4	102607760	102608760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177980)	TTS (NM_001177980)	18417.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	26.5	15.5	13.0	40.0	53.5	30.0
Merged-chr1-93342857-4	chr1	93342370	93343370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023200)	promoter-TSS (NM_023200)	-82.0	NM_080850	269224.0	Mm.379454	NM_080850	ENSMUSG00000026274	Pask	mKIAA0135	PAS domain containing serine/threonine kinase	protein-coding	1.5	10.5	2.0	1.0	1.5	1.0
Merged-chr7-19322291-2	chr7	19321791	19322791	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ZP3AR|Satellite|Satellite	-12246.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	6.5	10.5	1.0	3.0	3.5	3.0
Merged-chr6-83654303-2	chr6	83653803	83654803	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016751, intron 3 of 6)	L1MA10|LINE|L1	1813.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	69.5	79.5	108.5	31.5	84.0	107.0
Merged-chr2-84524206-4	chr2	84523694	84524694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17321.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22699617-4	chr8	22699111	22700111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159774, intron 2 of 21)	intron (NM_001159774, intron 2 of 21)	6972.0	NM_010546	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37312740-4	chr13	37312243	37313243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32602.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	3.5	6.0	3.5	10.5	2.5	0.5
Merged-chr4-40143369-4	chr4	40142869	40143869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007386, exon 1 of 21)	5' UTR (NM_007386, exon 1 of 21)	104.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68759403-4	chr10	68758888	68759888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 4 of 5)	ORR1E|LTR|ERVL-MaLR	35642.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-84829120-4	chr11	84828617	84829617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046281)	promoter-TSS (NR_046281)	-61.0	NR_046281	74995.0	Mm.84413	NR_046281	ENSMUSG00000086799	4930502E09Rik	-	RIKEN cDNA 4930502E09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80159987-4	chr10	80159497	80160497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	CpG	-7842.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-59598000-4	chr14	59597502	59598502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168535)	promoter-TSS (NM_001168535)	-43.0	NM_001168536	71891.0	Mm.439850	NM_027986	ENSMUSG00000021982	Cdadc1	2310010M10Rik|AI449174|AI463398|BB130816|NYD-SP15	cytidine and dCMP deaminase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120518823-2	chr11	120518323	120519323	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-11904.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45707013-4	chr7	45706521	45707521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016974, intron 2 of 3)	CpG	1774.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96629894-4	chr3	96629392	96630392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025875)	promoter-TSS (NM_025875)	-36.0	NM_025875	60365.0	Mm.261972	NM_025875	ENSMUSG00000038374	Rbm8a	2310057C03Rik|AA673428|Rbm8	RNA binding motif protein 8a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10278872-4	chr19	10278378	10279378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	25999.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88129088-3	chr15	88128565	88129565	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-185809.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	6.5	12.0	2.0	159.5	322.5	249.5
Merged-chr1-91043595-4	chr1	91043121	91044121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-9823.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-69186071-4	chr10	69185564	69186564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22488.0	NM_001252636	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43454691-4	chr4	43454233	43455233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007654)	promoter-TSS (NM_007654)	-107.0	NM_007654	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-54245248-2	chr3	54244748	54245748	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253682, intron 3 of 11)	intron (NM_001253682, intron 3 of 11)	89191.0	NM_001253682	22066.0	Mm.10100	NM_016984	ENSMUSG00000027748	Trpc4	CCE1|STRPC4|Trp4|Trrp4	transient receptor potential cation channel, subfamily C, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88648308-4	chr3	88647793	88648793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001198911)	TTS (NM_001198911)	4849.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	8.5	21.5	23.5	11.0	28.0	27.0
Merged-chr4-108619964-4	chr4	108619470	108620470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177045)	promoter-TSS (NM_177045)	14.0	NM_177045	319965.0	Mm.151129	NM_177045	ENSMUSG00000028582	Cc2d1b	A830039B04Rik|Freud2	coiled-coil and C2 domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95900069-4	chr15	95899573	95900573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 3 of 19)	intron (NM_175344, intron 3 of 19)	-70001.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-19751201-4	chr14	19750686	19751686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008695)	promoter-TSS (NM_008695)	-71.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	56.5	77.5	68.0	50.5	116.0	76.0
Merged-chr18-82909826-4	chr18	82909329	82910329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1050.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90043085-4	chr16	90042560	90043560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68361.0	NM_001145886	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10843055-3	chr19	10842566	10843566	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023044, exon 1 of 8)	exon (NM_023044, exon 1 of 8)	522.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191097820-3	chr1	191097371	191098371	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030060)	promoter-TSS (NM_030060)	-543.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-41633549-4	chr7	41633057	41634057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360680)	promoter-TSS (NM_001360680)	26.0	NM_001360674	67607.0	Mm.384626	NM_023363	ENSMUSG00000074165	Zfp788	2810426N06Rik|AI256342|AI605193	zinc finger protein 788	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55776505-4	chr16	55776010	55777010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45628.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124663351-4	chr8	124662813	124663813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175149)	promoter-TSS (NM_175149)	56.0	NM_175149	69551.0	Mm.261920	NM_175149	ENSMUSG00000031983	2310022B05Rik	-	RIKEN cDNA 2310022B05 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57256656-2	chr9	57256156	57257156	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028820, exon 2 of 3)	exon (NM_028820, exon 2 of 3)	5943.0	NM_028820	74211.0	Mm.428905	NM_028820	ENSMUSG00000032300	1700017B05Rik	AA682102|D9Ertd278e	RIKEN cDNA 1700017B05 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130222334-4	chr5	130221825	130222825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027854)	promoter-TSS (NM_027854)	-10.0	NM_027854	71667.0	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141672503-4	chr4	141672037	141673037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8422.0	NM_001033150	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	90.5	217.0	198.5	86.5	221.5	179.0
Merged-chr3-89911390-4	chr3	89910843	89911843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	1853.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	20.5	12.5	20.0	27.5	11.5	25.0
Merged-chr7-28387609-2	chr7	28387109	28388109	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026042, intron 3 of 3)	PB1D10|SINE|Alu	5081.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-79895443-4	chr17	79894878	79895878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357752, intron 1 of 13)	CpG	745.0	NM_178050	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-105266897-4	chr13	105266405	105267405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360891, intron 2 of 7)	intron (NM_001360891, intron 2 of 7)	26109.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	5.0	11.5	1.0	0.0	0.0	0.0
Merged-chr8-126591269-1	chr8	126590769	126591769	+	1000.0	f0_balb.idr	exon (NM_001164598, exon 2 of 2)	exon (NM_001164598, exon 2 of 2)	2167.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	24.0	63.5	40.0	13.5	40.0	27.0
Merged-chr10-80165151-4	chr10	80164604	80165604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-2735.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79768473-4	chr15	79767972	79768972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017470, intron 1 of 3)	intron (NM_017470, intron 1 of 3)	5995.0	NM_017470	54152.0	Mm.288159	NM_017470	ENSMUSG00000022420	Dnal4	D15Ertd424e|Dnalc4	dynein, axonemal, light chain 4	protein-coding	10.5	10.0	14.0	24.5	10.5	16.5
Merged-chr17-47873657-4	chr17	47873112	47874112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028767, intron 13 of 16)	intron (NM_028767, intron 13 of 16)	-38921.0	NM_001109973	17240.0	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	0.0	8.5	2.5	4.5	0.0	2.5
Merged-chr2-57238360-4	chr2	57237866	57238866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010274)	promoter-TSS (NM_010274)	-16.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114813974-4	chr5	114813490	114814490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027817)	promoter-TSS (NR_027817)	-14.0	NR_027817	66236.0	Mm.268546	NR_027817	ENSMUSG00000072694	1500011B03Rik	AI415201|AV141149|AW556386	RIKEN cDNA 1500011B03 gene	ncRNA	19.0	46.5	27.0	13.0	44.5	60.0
Merged-chr2-80315510-4	chr2	80315015	80316015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024181)	promoter-TSS (NM_024181)	49.0	NM_024181	66861.0	Mm.21762	NM_024181	ENSMUSG00000027006	Dnajc10	1200006L06Rik|D2Ertd706e|ERdj5|JPDI	DnaJ heat shock protein family (Hsp40) member C10	protein-coding	22.0	41.0	19.0	10.0	51.0	25.5
Merged-chr4-119733660-4	chr4	119733147	119734147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-74702.0	NM_008191	14916.0	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	9.5	8.0	9.5	14.5	7.5	1.5
Merged-chr3-40531029-4	chr3	40530527	40531527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8115.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	0.0	4.0	1.0	0.0	0.0	6.0
Merged-chr8-33471255-3	chr8	33470752	33471752	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-13059.0	NR_033589	628431.0	Mm.376526	NR_033589		Hmgb1-rs17	Hmg1-rs17	high mobility group box 1, related sequence 17	pseudo	25.0	33.0	20.0	0.0	0.0	2.0
Merged-chr7-35742339-4	chr7	35741811	35742811	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178704, intron 3 of 18)	intron (NM_178704, intron 3 of 18)	12143.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	0.0	0.0	0.0	8.0	6.0	6.5
Merged-chr2-131426656-4	chr2	131426164	131427164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65198.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-67543168-2	chr1	67542668	67543668	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	420141.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88621808-4	chr3	88621311	88622311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 1 of 21)	intron (NM_001198913, intron 1 of 21)	417.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	118.5	253.0	226.0	111.5	251.0	178.5
Merged-chr6-146577681-5	chr6	146577177	146578177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347513)	promoter-TSS (NM_001347513)	158.0	NM_001362108	71177.0	Mm.271774	NM_138757	ENSMUSG00000040250	Ints13	4933424B01Rik|Asun|Spata30	integrator complex subunit 13	protein-coding	190.5	449.5	300.5	187.0	320.0	273.0
Merged-chr10-111160356-4	chr10	111159843	111160843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-4459.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	8.5	18.0	9.0	18.5	42.0	22.0
Merged-chr5-129908588-4	chr5	129908103	129909103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026916)	promoter-TSS (NM_026916)	63.0	NM_026916	69034.0	Mm.211372	NM_026916	ENSMUSG00000095789	Nupr1l	1810010E01Rik|4930579G22Rik|Nupr2	nuclear protein transcriptional regulator 1 like	protein-coding	34.5	154.0	125.0	7.0	65.5	54.5
Merged-chr16-39053508-1	chr16	39053008	39054008	+	1000.0	f0_balb.idr	Intergenic	Intergenic	135442.0	NR_153800	102640746.0		NR_153800		Gm36742	-	predicted gene, 36742	ncRNA	0.0	11.5	3.5	18.0	5.5	6.0
Merged-chr4-117836579-5	chr4	117836085	117837085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008135, intron 1 of 13)	CpG	1327.0	NM_008135	14664.0	Mm.244549	NM_008135	ENSMUSG00000028542	Slc6a9	Glyt-1|Glyt1	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	protein-coding	4.5	8.5	3.0	0.0	1.5	0.0
Merged-chr1-66862882-4	chr1	66862393	66863393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007381, intron 1 of 10)	CpG	416.0	NM_007381	11363.0	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117840739-4	chr10	117840250	117841250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	5224.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	13.0	42.5	28.0	12.5	42.5	28.0
Merged-chr12-110978672-1	chr12	110978172	110979172	+	1000.0	f0_c57.idr	promoter-TSS (NM_001361917)	promoter-TSS (NM_001361917)	-54.0	NM_001361917	74251.0	Mm.250989	NM_175207	ENSMUSG00000037904	Ankrd9	2500003O20Rik	ankyrin repeat domain 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-56419074-4	chr9	56418595	56419595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025812, intron 1 of 9)	intron (NM_025812, intron 1 of 9)	476.0	NM_025812	66867.0	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41604362-4	chr13	41603841	41604841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1875.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172148072-4	chr1	172147596	172148596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153555)	promoter-TSS (NM_153555)	81.0	NM_001357204	98193.0	Mm.159915	NM_153555	ENSMUSG00000026554	Dcaf8	AA408877|AA433120|AA792214|AU018973|C76055|D1Dau35e|D1Ucla4|H326|Wdr42a	DDB1 and CUL4 associated factor 8	protein-coding	112.0	336.5	237.0	135.5	316.0	219.5
Merged-chr13-113435341-4	chr13	113434883	113435883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	67461.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-15276094-4	chr3	15275589	15276589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	56213.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	14.5	30.0	31.0	15.0	60.0	48.5
Merged-chr6-15841724-4	chr6	15841226	15842226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121065.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32588767-2	chr11	32588267	32589267	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001359177, exon 6 of 19)	exon (NM_001359177, exon 6 of 19)	-53788.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-163994809-4	chr1	163994303	163995303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201364)	promoter-TSS (NM_201364)	-7.0	NM_201364	381306.0	Mm.28152	NM_201364	ENSMUSG00000041406	BC055324	-	cDNA sequence BC055324	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-56947469-4	chr4	56946950	56947950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175518)	promoter-TSS (NM_175518)	-21.0	NM_175518	242474.0	Mm.296632	NM_175518	ENSMUSG00000055296	Tmem245	A630051L19Rik|AI957324|D730040F13Rik	transmembrane protein 245	protein-coding	0.0	1.5	3.0	0.0	4.5	10.5
Merged-chr1-135411164-4	chr1	135410675	135411675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357578, intron 5 of 24)	intron (NM_001357578, intron 5 of 24)	19316.0	NM_153774	226432.0	Mm.271642	NM_153774	ENSMUSG00000041879	Ipo9	0710008K06Rik|AI845704|C78347|Imp9|Ranbp9	importin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122297847-4	chr7	122297346	122298346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	8721.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121702378-4	chr11	121701885	121702885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144797)	promoter-TSS (NM_144797)	-42.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-177737635-4	chr1	177737144	177738144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027077, intron 2 of 5)	(CA)n|Simple_repeat|Simple_repeat	7830.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-108046349-2	chr13	108045849	108046849	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048250, intron 1 of 2)	RMER6A|LTR|ERVK	1875.0	NM_001048250	75616.0	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	0.5	9.5	8.0	6.0	15.0	6.5
Merged-chr4-155178469-4	chr4	155177957	155178957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	44078.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103102911-4	chr11	103102419	103103419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_025988, exon 2 of 11)	5' UTR (NM_025988, exon 2 of 11)	1231.0	NM_025988	67131.0	Mm.390367	NM_025988	ENSMUSG00000056938	Acbd4	2010009P05Rik|2010015A21Rik|AI849317	acyl-Coenzyme A binding domain containing 4	protein-coding	0.0	1.5	2.5	0.0	0.0	0.0
Merged-chr3-158036590-4	chr3	158036087	158037087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289524)	promoter-TSS (NM_001289524)	52.0	NM_001093752	69207.0	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99562502-4	chr12	99561993	99562993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1348.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-90970059-2	chr10	90969559	90970559	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001128086, exon 25 of 25)	3' UTR (NM_001128086, exon 25 of 25)	112684.0	NM_001042558	11783.0	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-172370621-4	chr2	172370228	172371228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291185)	promoter-TSS (NM_001291185)	-158.0	NM_011497	20878.0	Mm.249363	NM_011497	ENSMUSG00000027496	Aurka	AIRK1|ARK-1|AU019385|AW539821|Ark1|Aurora-A|Ayk1|IAK|IAK1|Stk6	aurora kinase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-121183885-4	chr6	121183364	121184364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_130903, exon 1 of 7)	non-coding (NR_130903, exon 1 of 7)	197.0	NM_001304773	74043.0	Mm.491240	NM_028730	ENSMUSG00000067825	Pex26	4632428M11Rik	peroxisomal biogenesis factor 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-46010472-4	chr16	46009958	46010958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134480)	promoter-TSS (NM_001134480)	-45.0	NM_001134480	433022.0	Mm.380993	NM_001134480	ENSMUSG00000087141	Plcxd2	AW494639|EG433022	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-77547069-4	chr14	77546553	77547553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253759, intron 7 of 19)	intron (NM_001253759, intron 7 of 19)	-40185.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	9.5	32.0	30.5	17.5	37.0	15.5
Merged-chr11-96824265-4	chr11	96823744	96824744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130454)	promoter-TSS (NM_001130454)	-117.0	NM_001130451	18023.0	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32223117-2	chr19	32222617	32223617	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	-12104.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-90290393-2	chr18	90289893	90290893	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-219761.0	NM_198295	67988.0	Mm.268041	NM_198295	ENSMUSG00000024614	Tmx3	6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830	thioredoxin-related transmembrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-81767881-4	chr8	81767382	81768382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001297593, intron 4 of 23)	intron (NM_001297593, intron 4 of 23)	425320.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	41.0	40.5	30.0	31.0	26.5	41.5
Merged-chr10-13987553-4	chr10	13987029	13988029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	21150.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-124112757-4	chr9	124112274	124113274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8769.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59626109-4	chr4	59625604	59626604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153158)	promoter-TSS (NM_153158)	-107.0	NM_001015681	230259.0	Mm.45688	NM_153158	ENSMUSG00000045071	E130308A19Rik	-	RIKEN cDNA E130308A19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-56352644-4	chr13	56352204	56353204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10196.0	NR_046061	100038494.0	Mm.370447	NR_046061	ENSMUSG00000074885	Gm10782	-	predicted gene 10782	ncRNA	72.0	137.0	129.0	114.5	200.0	160.5
Merged-chr19-56739382-2	chr19	56738882	56739882	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17010.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80072204-4	chr15	80071719	80072719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6360.0	NR_028282	100302601.0		NR_028282	ENSMUSG00000077734	Snord83b	MBII-10	small nucleolar RNA, C/D box 83B	snoRNA	73.5	115.5	104.5	98.5	76.0	76.0
Merged-chr15-81858305-4	chr15	81857780	81858780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020507)	promoter-TSS (NM_020507)	46.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	2.0	17.0	15.5	11.5	22.0	13.5
Merged-chr14-60634729-4	chr14	60634227	60635227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033272)	promoter-TSS (NM_001033272)	22.0	NM_001033272	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	7.0	9.5	6.5	3.0	12.0	9.5
Merged-chr7-55968675-4	chr7	55968175	55969175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015495, intron 1 of 5)	ORR1E-int|LTR|ERVL-MaLR	6144.0	NR_015495	320845.0	Mm.274484	NM_001033396		A230056P14Rik	-	RIKEN cDNA A230056P14 gene	ncRNA	37.0	72.5	42.0	5.0	53.0	58.0
Merged-chr11-64832332-4	chr11	64831841	64832841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-146694.0	NM_023479	68626.0	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	7.5	25.0	12.5	13.5	39.5	11.0
Merged-chr3-84883964-4	chr3	84883486	84884486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177773, intron 3 of 13)	B4|SINE|B4	19841.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	11.5	12.0	13.0	14.0	27.0	13.5
Merged-chr2-3285281-2	chr2	3284781	3285781	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008708, intron 1 of 13)	intron (NM_008708, intron 1 of 13)	1069.0	NM_001290370	18108.0	Mm.65021	NM_008708	ENSMUSG00000026643	Nmt2	A930001K02Rik|AI605445|AU044698|hNMT-2	N-myristoyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-31713793-1	chr11	31713293	31714293	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-41931.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	102.5	96.0	123.0	26.5	25.5	69.0
Merged-chr13-55405623-4	chr13	55405106	55406106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011392, intron 8 of 12)	intron (NM_011392, intron 8 of 12)	5958.0	NM_011392	20505.0	Mm.276355	NM_011392	ENSMUSG00000021490	Slc34a1	NaPi-IIa|Npt2|Npt2a|Slc17a2	solute carrier family 34 (sodium phosphate), member 1	protein-coding	5.0	0.0	1.5	2.5	0.0	0.0
Merged-chr13-49183941-4	chr13	49183434	49184434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3613.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-127774063-4	chr1	127773568	127774568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045298)	promoter-TSS (NR_045298)	-14.0	NR_045298	100502745.0	Mm.440061	NR_045298	ENSMUSG00000102014	2900009J06Rik	-	RIKEN cDNA 2900009J06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-61585623-4	chr2	61585115	61586115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011529, intron 1 of 7)	intron (NM_011529, intron 1 of 7)	7029.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124705467-2	chr6	124704967	124705967	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145130)	TTS (NM_145130)	6711.0	NM_013536	14791.0	Mm.6390	NM_013536	ENSMUSG00000004268	Emg1	C2f|Grcc2f	EMG1 N1-specific pseudouridine methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126775407-2	chr7	126774907	126775907	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024228, intron 9 of 9)	intron (NM_024228, intron 9 of 9)	-1568.0	NM_026875	66090.0	Mm.27114	NM_025347	ENSMUSG00000042675	Ypel3	0610043B10Rik|1190001G19Rik|Suap	yippee like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-115763457-4	chr3	115762959	115763959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48404.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	31.0	50.0	50.0	16.5	39.5	25.5
Merged-chr12-16881915-4	chr12	16881428	16882428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13050.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	45.5	54.0	41.0	22.5	70.5	41.5
Merged-chr2-145468937-4	chr2	145468432	145469432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053195, intron 3 of 16)	Tigger7|DNA|TcMar-Tigger	86050.0	NM_001037929	627302.0	Mm.445953	NM_001037929		Gm14092	-	predicted gene 14092	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75764363-4	chr10	75763867	75764867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172549)	promoter-TSS (NM_172549)	-10.0	NM_172549	104248.0	Mm.257404	NM_172549	ENSMUSG00000020196	Cabin1	A330070M20Rik|Cain|Ppp3in	calcineurin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-87921846-2	chr7	87921346	87922346	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081414, intron 4 of 9)	intron (NM_001081414, intron 4 of 9)	337678.0	NM_001143834	108071.0	Mm.235018	NM_001033224	ENSMUSG00000049583	Grm5	6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b	glutamate receptor, metabotropic 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137531108-4	chr5	137530631	137531631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010312, intron 1 of 9)	CpG	-1537.0	NR_105846	102465227.0		NR_105846	ENSMUSG00000098597	Mir6418	Gm27629|mir-6418|mmu-mir-6418	microRNA 6418	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21506369-4	chr13	21505881	21506881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_026798, intron 1 of 1)	intron (NR_026798, intron 1 of 1)	143.0	NR_026798	100038371.0	Mm.133328	NR_026798		Zfp389	-	zinc finger protein 389	pseudo	0.0	0.0	1.5	4.0	0.0	1.5
Merged-chr3-109179935-2	chr3	109179435	109180435	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56786.0	NM_172685	229731.0	Mm.33574	NM_172685	ENSMUSG00000040322	Slc25a24	2610016M12Rik	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-149940411-4	chr1	149939905	149940905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	-17966.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100520972-4	chr12	100520463	100521463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033213)	promoter-TSS (NM_001033213)	-141.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64900778-2	chr5	64900278	64901278	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31921.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120042627-4	chr11	120042091	120043091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198787)	promoter-TSS (NM_001198787)	-810.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	93.0	150.5	159.5	87.5	170.5	161.0
Merged-chr1-88587562-4	chr1	88587063	88588063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36046.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52036532-4	chr13	52036049	52037049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60192.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99393378-4	chr15	99392892	99393892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171035, intron 1 of 9)	CpG	173.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	249.5	697.5	459.5	181.5	526.0	386.5
Merged-chr4-121017266-4	chr4	121016762	121017762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133716)	promoter-TSS (NM_133716)	-15.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	24.5	57.0	61.0	24.0	53.5	54.5
Merged-chr17-26535487-4	chr17	26535017	26536017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25995.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	80.0	192.0	115.5	80.0	232.0	131.0
Merged-chr8-70612014-4	chr8	70611480	70612480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3666.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	29.0	57.5	36.0	27.5	41.5	26.5
Merged-chr11-4333216-3	chr11	4332717	4333717	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66421.0	NM_001039537	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71118202-4	chr17	71117699	71118699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083934, intron 33 of 36)	intron (NM_001083934, intron 33 of 36)	-65333.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49712807-4	chr11	49712292	49713292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_212484)	promoter-TSS (NM_212484)	-70.0	NM_212484	104625.0	Mm.247113	NM_212484	ENSMUSG00000020362	Cnot6	CCR4	CCR4-NOT transcription complex, subunit 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-16013906-4	chr4	16013405	16014405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145950)	promoter-TSS (NM_145950)	-17.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96075102-2	chr11	96074602	96075602	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007506, intron 1 of 4)	intron (NM_007506, intron 1 of 4)	529.0	NM_001161419	11951.0	Mm.258	NM_007506	ENSMUSG00000006057	Atp5g1	-	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9)	protein-coding	6.0	16.5	12.0	2.0	9.5	15.5
Merged-chr3-61340306-4	chr3	61339792	61340792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24215.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57492260-4	chr10	57491758	57492758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008297, intron 1 of 11)	RLTR20D|LTR|ERVK	5873.0	NM_008297	15500.0	Mm.261395	NM_008297	ENSMUSG00000019878	Hsf2	AI661205	heat shock factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-127021177-4	chr4	127020648	127021648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045010)	promoter-TSS (NR_045010)	-153.0	NR_045010	71514.0	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36830668-4	chr5	36830147	36831147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008550)	promoter-TSS (NM_008550)	2.0	NM_008550	17160.0	Mm.761	NM_008550	ENSMUSG00000029119	Man2b2	mKIAA0935	mannosidase 2, alpha B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-18616304-3	chr8	18615790	18616790	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173189, intron 3 of 13)	intron (NM_173189, intron 3 of 13)	21159.0	NM_173189	244329.0	Mm.235296	NM_173189	ENSMUSG00000039842	Mcph1	5430437K10Rik|BRIT1|D030046N04Rik|MCT|Tg(HLA-A2.1)1Enge	microcephaly, primary autosomal recessive 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53329436-4	chr19	53328940	53329940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360345)	promoter-TSS (NM_001360345)	27.0	NM_001360345	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43763667-2	chr4	43763167	43764167	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7342.0	NM_019476	29849.0	Mm.88845	NM_019476	ENSMUSG00000044801	Olfr159	MOR262-5|Olfr37e|mOR37e	olfactory receptor 159	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-71144848-4	chr11	71144354	71145354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004142)	promoter-TSS (NM_001004142)	-150.0	NM_001004142	195046.0	Mm.240227	NM_001004142	ENSMUSG00000069830	Nlrp1a	CARD7|DEFCAP|Gm14|Gm15|NAC|Nalp1|Nalp1a|Nlrp1|PP1044	NLR family, pyrin domain containing 1A	protein-coding	67.0	74.0	64.0	21.0	22.0	42.0
Merged-chr5-124860198-2	chr5	124859696	124860696	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144819, intron 1 of 3)	L3|LINE|CR1	2025.0	NM_144819	215707.0	Mm.389693	NM_144819	ENSMUSG00000037979	Ccdc92	AW050178|D5Bwg0834e	coiled-coil domain containing 92	protein-coding	0.0	0.0	1.0	2.5	2.0	0.0
Merged-chr6-124898519-4	chr6	124898041	124899041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10341.0	NM_013488	12504.0	Mm.2209	NM_013488	ENSMUSG00000023274	Cd4	L3T4|Ly-4	CD4 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36145257-4	chr17	36144770	36145770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033517, intron 1 of 3)	CpG	252.0	NR_033517	675325.0	Mm.75890	NR_033517	ENSMUSG00000038311	2410017I17Rik	-	RIKEN cDNA 2410017I17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-104571616-4	chr5	104571081	104572081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346671)	promoter-TSS (NM_001346671)	-91.0	NM_001346672	69623.0	Mm.69919	NM_027142		Zfp33b	2310012P17Rik	zinc finger protein 33B	protein-coding	102.0	146.5	147.5	38.0	64.0	60.5
Merged-chr3-69655210-4	chr3	69654704	69655704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	-56244.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	40.0	50.5	39.5	47.0	75.5	50.0
Merged-chr7-28371119-2	chr7	28370619	28371619	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001083912, exon 2 of 19)	exon (NM_001083912, exon 2 of 19)	1543.0	NM_138752	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114799654-2	chr5	114799154	114800154	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026718, intron 11 of 14)	B1_Mur2|SINE|Alu	14322.0	NR_027818	66236.0	Mm.268546	NR_027817	ENSMUSG00000072694	1500011B03Rik	AI415201|AV141149|AW556386	RIKEN cDNA 1500011B03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-58497997-4	chr10	58497524	58498524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162956)	promoter-TSS (NM_001162956)	87.0	NM_001162956	76138.0	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41311326-4	chr4	41310823	41311823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026893, intron 2 of 8)	intron (NM_026893, intron 2 of 8)	3578.0	NM_026893	68970.0	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-22076723-4	chr3	22076215	22077215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030732)	promoter-TSS (NM_030732)	63.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-36613419-4	chr3	36612908	36613908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027810)	promoter-TSS (NM_027810)	-19.0	NM_027810	71492.0	Mm.286187	NM_027810	ENSMUSG00000037325	Bbs7	8430406N16Rik	Bardet-Biedl syndrome 7 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111788411-4	chr13	111787974	111788974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	20519.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35047968-4	chr12	35047438	35048438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	749.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	47.5	76.5	73.0	10.5	93.5	31.5
Merged-chr10-80399693-4	chr10	80399190	80400190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001306143)	promoter-TSS (NM_001306143)	-159.0	NM_001306143	17192.0	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92278165-4	chr5	92277596	92278596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163687)	promoter-TSS (NM_001163687)	85.0	NM_001163687	67111.0	Mm.28890	NM_025972	ENSMUSG00000029413	Naaa	2210023K21Rik|3830414F09Rik|Asahl	N-acylethanolamine acid amidase	protein-coding	84.5	203.0	99.5	86.0	132.5	114.0
Merged-chr3-103859093-4	chr3	103858564	103859564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104070)	promoter-TSS (NR_104070)	-731.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	106.0	332.0	177.5	90.0	201.0	144.5
Merged-chr15-27665802-4	chr15	27665302	27666302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	15740.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-91702007-4	chr10	91701504	91702504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-186825.0	NR_152729	102633867.0	Mm.351514	NR_152729	ENSMUSG00000111657	Gm31592	-	predicted gene, 31592	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33978904-4	chr17	33978406	33979406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_004446)	promoter-TSS (NR_004446)	-115.0	NR_004446	630499.0	Mm.440940	NM_001081015		H2-K2	EG630499|Gm7035|H-2K1|H-2K1K|H-2K2|H2-K1	histocompatibility 2, K region locus 2	pseudo	181.0	591.0	343.0	142.0	449.5	249.0
Merged-chr6-29529548-1	chr6	29529048	29530048	+	1000.0	f0_c57.idr	intron (NM_001252382, intron 1 of 8)	intron (NM_001252382, intron 1 of 8)	266.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-4749343-4	chr6	4748844	4749844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040611, intron 1 of 1)	intron (NM_001040611, intron 1 of 1)	2038.0	NM_130877	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-10468876-4	chr10	10468371	10469371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	3443.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	131.5	302.5	251.0	76.0	232.5	147.0
Merged-chr10-34418589-4	chr10	34418109	34419109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347463)	promoter-TSS (NM_001347463)	-58.0	NM_001347463	319638.0	Mm.73467	NM_176968	ENSMUSG00000039480	Nt5dc1	6030401B09Rik|AW987726|Nt5c2l1	5'-nucleotidase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-129901425-4	chr3	129900906	129901906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009811)	promoter-TSS (NM_009811)	-9.0	NM_009811	12368.0	Mm.281379	NM_009811	ENSMUSG00000027997	Casp6	CASP-6|Mch2	caspase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-55409420-4	chr18	55408890	55409890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-416799.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	30.0	68.0	31.0	46.5	74.5	51.0
Merged-chr10-66852107-4	chr10	66851620	66852620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	68264.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29739624-4	chr2	29739118	29740118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001039087, exon 26 of 26)	3' UTR (NM_001039087, exon 26 of 26)	-21910.0	NM_001177392	433416.0	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	-	predicted gene 13547	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89847807-4	chr3	89847297	89848297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172530, intron 2 of 5)	MIR|SINE|MIR	16427.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114810409-2	chr11	114809909	114810909	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11485.0	NM_181749	217302.0	Mm.269127	NM_181749	ENSMUSG00000034677	Gpr142	PGR2	G protein-coupled receptor 142	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135598043-4	chr7	135597521	135598521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316680, intron 1 of 20)	intron (NM_001316680, intron 1 of 20)	4540.0	NM_001316680	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-5244214-4	chr15	5243736	5244736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008965)	promoter-TSS (NM_008965)	-49.0	NM_008965	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-40921486-4	chr13	40920997	40921997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133219, intron 1 of 2)	intron (NM_133219, intron 1 of 2)	3863.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65630278-4	chr17	65629770	65630770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9486.0	NM_153519	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90060082-4	chr9	90059583	90060583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312649, intron 1 of 10)	B4A|SINE|B4	5816.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	109.0	287.0	218.5	134.5	296.5	197.5
Merged-chr8-85083244-4	chr8	85082744	85083744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010764)	promoter-TSS (NM_010764)	-25.0	NM_010764	17159.0	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	54.5	126.5	92.0	54.0	95.0	64.5
Merged-chr10-128535994-4	chr10	128535481	128536481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10122.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34715574-4	chr13	34715065	34716065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-24077.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88721694-4	chr5	88721178	88722178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026735, intron 1 of 5)	C-rich|Low_complexity|Low_complexity	807.0	NM_026735	68473.0	Mm.35764	NM_026735	ENSMUSG00000006262	Mob1b	1110003E08Rik|AU015450|B230364F10|Mobkl1a	MOB kinase activator 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46304647-4	chr19	46304116	46305116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177369)	promoter-TSS (NM_001177369)	-121.0	NM_001177369	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34949431-4	chr5	34948932	34949932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173402)	promoter-TSS (NM_173402)	-16.0	NM_173402	71729.0	Mm.196208	NM_173402	ENSMUSG00000029101	Rgs12	1200016K18Rik|4632412M04Rik|AI481290|E130309H11	regulator of G-protein signaling 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93589633-4	chr10	93589102	93590102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027246)	promoter-TSS (NM_027246)	56.0	NM_027246	69878.0	Mm.259642	NM_027246	ENSMUSG00000020018	Snrpf	2010013O18Rik|SMF|sm-F|snRNP-F	small nuclear ribonucleoprotein polypeptide F	protein-coding	82.5	164.5	160.0	25.0	62.5	64.0
Merged-chr2-122611288-4	chr2	122610742	122611742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025961)	promoter-TSS (NM_025961)	35.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	139.0	340.0	169.5	109.5	383.5	276.5
Merged-chr4-139622768-4	chr4	139622278	139623278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175438)	promoter-TSS (NM_175438)	-116.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	39.5	113.5	50.0	45.0	54.5	49.0
Merged-chr1-173423085-4	chr1	173422582	173423582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 1 of 8)	intron (NM_001013779, intron 1 of 8)	2478.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	4.0	1.0	0.0	1.5	1.0	0.0
Merged-chr1-118311333-4	chr1	118310855	118311855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153836)	promoter-TSS (NR_153836)	-9.0	NM_011650	22099.0	Mm.426637	NM_011650	ENSMUSG00000026374	Tsn	2610034C24Rik|AU040286|C3PO|TB-RBP	translin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-75707405-4	chr13	75706889	75707889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138953)	promoter-TSS (NM_138953)	-95.0	NM_138953	192657.0	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-109455817-2	chr7	109455317	109456317	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170913, intron 17 of 19)	intron (NM_001170913, intron 17 of 19)	-16764.0	NM_054103	117229.0	Mm.389950	NM_054103	ENSMUSG00000031027	Stk33	4921505G21Rik|AW061264	serine/threonine kinase 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76957859-4	chr12	76957354	76958354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146176, intron 1 of 3)	intron (NM_001146176, intron 1 of 3)	4394.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91476364-4	chr2	91475872	91476872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001145857, exon 9 of 12)	exon (NM_001145857, exon 9 of 12)	18841.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	4.0	26.0	38.5	13.5	21.5	25.5
Merged-chr17-33394682-4	chr17	33394185	33395185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009542)	promoter-TSS (NM_009542)	-48.0	NM_009542	22643.0	Mm.4417	NM_009542	ENSMUSG00000055240	Zfp101	AI316498|AI325003	zinc finger protein 101	protein-coding	2.0	15.0	16.0	3.0	11.0	18.5
Merged-chr8-107291507-4	chr8	107291008	107292008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).3	intron (NR_039557, intron 2 of 3).3	-1962.0	NM_018823	54446.0	Mm.390057	NM_018823	ENSMUSG00000003847	Nfat5	AI225870|B130038B15Rik|CAG-8|CAG80|NFATL1|OREBP|TonEBP|mKIAA0827|nfatz	nuclear factor of activated T cells 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122376818-4	chr14	122376318	122377318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029556, intron 4 of 7)	intron (NM_029556, intron 4 of 7)	74297.0	NR_033325	328479.0	Mm.86095	NR_033325	ENSMUSG00000064052	Gm5089	6530402A20|C030005G22Rik|EG328479	predicted gene 5089	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-5308752-4	chr9	5308242	5309242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007609)	promoter-TSS (NM_007609)	-107.0	NM_007609	12363.0	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21513658-2	chr9	21513158	21514158	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-3424.0	NR_136911	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8240857-4	chr10	8240365	8241365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 7 of 7)	intron (NM_177387, intron 7 of 7)	277960.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44985677-4	chr7	44985185	44986185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045521, intron 1 of 11)	intron (NR_045521, intron 1 of 11)	735.0	NM_001252476	15469.0	Mm.27545	NM_019830	ENSMUSG00000109324	Prmt1	6720434D09Rik|AW214366|Hrmt1l2|Mrmt1	protein arginine N-methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117989361-4	chr2	117988829	117989829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	121873.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	0.0	1.0	0.0	1.5	0.0	0.0
Merged-chr11-113335029-1	chr11	113334529	113335529	+	1000.0	f1_balb.idr	intron (NM_027216, intron 6 of 9)	ORR1E|LTR|ERVL-MaLR	-125360.0	NR_040276	319871.0	Mm.383743	NR_040276	ENSMUSG00000085421	4732490B19Rik	-	RIKEN cDNA 4732490B19 gene	ncRNA	7.5	1.0	5.5	12.0	14.5	25.5
Merged-chr3-90322286-2	chr3	90321786	90322786	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19368.0	NM_139304	229542.0	Mm.270999	NM_139304	ENSMUSG00000042390	Gatad2b	AL118180|C430014D17Rik|P66beta|mKIAA1150	GATA zinc finger domain containing 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-8056537-4	chr5	8056060	8057060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080974)	promoter-TSS (NM_001080974)	18.0	NM_001080974	109552.0	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-38267843-3	chr7	38267275	38268275	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025390, intron 2 of 6)	intron (NM_025390, intron 2 of 6)	3573.0	NM_025390	66161.0	Mm.22284	NM_025390	ENSMUSG00000030423	Pop4	1110023P21Rik|Rpp29	processing of precursor 4, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	3.0	2.0	7.0	18.0	19.0	9.5
Merged-chr13-20788207-4	chr13	20787702	20788702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5911.0	NM_001281854	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	18.0	34.5	12.5	11.5	19.5	21.5
Merged-chr10-117063896-4	chr10	117063419	117064419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358767)	promoter-TSS (NM_001358767)	-67.0	NM_007636	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126584441-5	chr8	126583944	126584944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8992.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	43.5	140.5	89.5	49.5	105.5	71.5
Merged-chr11-115535996-2	chr11	115535496	115536496	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133354, intron 1 of 3)	CpG	234.0	NM_133354	170930.0	Mm.29923	NM_133354	ENSMUSG00000020738	Sumo2	SUMO-2|Smt3A|Smt3b|Smt3h2	small ubiquitin-like modifier 2	protein-coding	3.5	11.5	1.0	8.0	4.0	2.0
Merged-chr9-61372295-4	chr9	61371802	61372802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083927)	promoter-TSS (NM_001083927)	-64.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4453204-4	chr2	4452717	4453717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	52241.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77515090-2	chr10	77514590	77515590	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133998, intron 1 of 5)	intron (NM_133998, intron 1 of 5)	723.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59882573-4	chr2	59882076	59883076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028118)	promoter-TSS (NM_028118)	30.0	NM_001159636	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97232532-4	chr3	97232014	97233014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5150.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-6284784-2	chr7	6284284	6285284	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-1796.0	NM_001024928	384763.0	Mm.276279	NM_001024928	ENSMUSG00000054893	Zfp667	A830025F02Rik|Mip1|ZNF667	zinc finger protein 667	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21827100-4	chr10	21826580	21827580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55104.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154548904-4	chr2	154548403	154549403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029305)	promoter-TSS (NM_029305)	-1.0	NM_029305	75480.0	Mm.440434	NM_029305	ENSMUSG00000038523	1700003F12Rik	-	RIKEN cDNA 1700003F12 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20478958-4	chr14	20478452	20479452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110794, intron 1 of 12)	intron (NM_001110794, intron 1 of 12)	1181.0	NM_001110794	11750.0	Mm.280231	NM_009674	ENSMUSG00000021814	Anxa7	AI265384|AI316497|Anx7|synexin	annexin A7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31698559-4	chr5	31698062	31699062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153196)	promoter-TSS (NM_153196)	512.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118879196-4	chr10	118878720	118879720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-10317.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-69613300-2	chr13	69612800	69613800	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145354, intron 3 of 18)	B2_Mm2|SINE|B2	1284.0	NM_145354	28114.0	Mm.260009	NM_145354	ENSMUSG00000021595	Nsun2	D13Wsu123e|Misu	NOL1/NOP2/Sun domain family member 2	protein-coding	5.5	2.0	1.5	5.5	2.0	1.0
Merged-chr4-134468357-4	chr4	134467852	134468852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019641)	promoter-TSS (NM_019641)	32.0	NM_019641	16765.0	Mm.378957	NM_019641	ENSMUSG00000028832	Stmn1	19k|Lag|Lap18|Op18|P18|P19|Pig|Pp17|Pp18|Pp19|Pr22|Smn	stathmin 1	protein-coding	8.0	30.5	15.5	8.0	29.0	18.0
Merged-chr19-11037739-2	chr19	11037239	11038239	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	12827.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110696449-4	chr12	110695939	110696939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010480)	promoter-TSS (NM_010480)	-44.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52236333-4	chr13	52235835	52236835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	139594.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45972256-4	chr4	45971754	45972754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146142)	promoter-TSS (NM_146142)	-43.0	NM_146142	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	2.0	8.5	2.5	2.0	2.0	5.0
Merged-chr9-49051604-4	chr9	49051084	49052084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3997.0	NM_012039	26951.0	Mm.24791	NM_012039	ENSMUSG00000032264	Zw10	6330566F14Rik|MmZw10	zw10 kinetochore protein	protein-coding	7.5	5.0	1.0	2.0	12.5	19.5
Merged-chr4-3783565-2	chr4	3783065	3784065	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 12 of 12)	B3|SINE|B2	52090.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106819671-4	chr11	106819172	106820172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025481)	TTS (NM_025481)	30420.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	22.5	54.0	31.5	20.5	43.5	33.5
Merged-chr4-5644122-4	chr4	5643621	5644621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173426)	promoter-TSS (NM_173426)	31.0	NM_173426	242297.0	Mm.331470	NM_173426	ENSMUSG00000049119	Fam110b	1700012H17Rik|5031405P22|AW049855	family with sequence similarity 110, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141550588-4	chr7	141550074	141551074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10717.0	NM_001142681	68038.0	Mm.245355	NM_026522	ENSMUSG00000025512	Chid1	3110023E09Rik|AI841869	chitinase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150840320-4	chr2	150839818	150840818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 6 of 12)	intron (NR_151505, intron 6 of 12)	2252.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91002369-4	chr16	91001851	91002851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045515, intron 2 of 32)	intron (NM_001045515, intron 2 of 32)	8744.0	NM_001045515	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64410890-4	chr5	64410348	64411348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57094.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	11.5	18.5	13.0	13.5	17.0	16.0
Merged-chr18-60596181-4	chr18	60595701	60596701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177340, exon 3 of 3)	exon (NM_177340, exon 3 of 3)	-4485.0	NM_133363	170947.0	Mm.159257	NM_133363	ENSMUSG00000049173	Myoz3	4833419K08Rik|Fatz-3	myozenin 3	protein-coding	1.0	0.0	1.5	0.0	2.5	3.5
Merged-chr7-24316737-4	chr7	24316227	24317227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199321)	promoter-TSS (NM_001199321)	-61.0	NM_001199321	22756.0	Mm.295762	NM_009568	ENSMUSG00000074282	Zfp94	-	zinc finger protein 94	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129402637-4	chr6	129402142	129403142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019985, intron 4 of 5)	intron (NM_019985, intron 4 of 5)	5345.0	NM_001204239	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-44027465-3	chr17	44026976	44027976	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357742, intron 4 of 4)	intron (NM_001357742, intron 4 of 4)	-51326.0	NM_001168620	83965.0	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	3.5	0.0	3.5	2.5	9.0	1.5
Merged-chr1-85625034-1	chr1	85624534	85625534	+	1000.0	f1_balb.idr	intron (NM_001013817, intron 7 of 16)	intron (NM_001013817, intron 7 of 16)	-21143.0	NM_175397	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171233130-4	chr1	171232623	171233623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010185, intron 1 of 4)	MIR|SINE|MIR	1226.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	28.5	104.0	58.0	27.0	120.0	65.5
Merged-chr9-87021953-4	chr9	87021461	87022461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024195)	promoter-TSS (NM_024195)	-68.0	NM_024195	266690.0	Mm.30166	NM_024195	ENSMUSG00000032872	Cyb5r4	2810034J18Rik|B5+B5R|C79736|Cb5cb5r|Ncb5or|b5/b5r|b5b5r	cytochrome b5 reductase 4	protein-coding	81.5	238.5	132.0	30.0	109.0	92.0
Merged-chr9-21917735-2	chr9	21917235	21918235	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031874, intron 1 of 4)	intron (NM_031874, intron 1 of 4)	448.0	NM_031874	19340.0	Mm.260157	NM_031874	ENSMUSG00000019066	Rab3d	C130057E11Rik	RAB3D, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-22357612-4	chr4	22357111	22358111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104378)	promoter-TSS (NR_104378)	68.0	NR_104380	269514.0	Mm.40708	NM_172988	ENSMUSG00000040410	Fbxl4	AI836810|FBL4|FBL5	F-box and leucine-rich repeat protein 4	protein-coding	1.5	0.5	2.0	0.0	0.0	0.5
Merged-chr9-21495494-2	chr9	21494994	21495994	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 14 of 19)	intron (NM_001357721, intron 14 of 19)	1070.0	NR_029585	387194.0		NR_029585	ENSMUSG00000065547	Mir199a-1	Mirn199|Mirn199a-1|mir-199a-1	microRNA 199a-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83101543-4	chr6	83101070	83102070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081266)	promoter-TSS (NM_001081266)	54.0	NM_001081266	243510.0	Mm.436553	NM_001081266	ENSMUSG00000107499	Ccdc142	A230058J24Rik	coiled-coil domain containing 142	protein-coding	63.0	81.5	78.0	43.0	89.0	72.0
Merged-chr8-69903270-4	chr8	69902697	69903697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023312)	promoter-TSS (NM_023312)	-639.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	5.0	50.5	35.0	1.5	56.5	35.0
Merged-chr6-72161905-4	chr6	72161373	72162373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-38676.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132599295-4	chr2	132598766	132599766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033469, intron 1 of 3)	intron (NR_033469, intron 1 of 3)	1070.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96967059-4	chr11	96966578	96967578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030220, intron 1 of 6)	intron (NM_030220, intron 1 of 6)	10610.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8995667-4	chr15	8995170	8996170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198024, intron 1 of 13)	intron (NM_198024, intron 1 of 13)	27721.0	NM_198024	223332.0	Mm.321371	NM_198024	ENSMUSG00000048424	Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73537877-4	chr7	73537380	73538380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	CpG	3866.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4928335-4	chr19	4927838	4928838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133803)	promoter-TSS (NM_133803)	-51.0	NM_133803	75221.0	Mm.234769	NM_133803	ENSMUSG00000063904	Dpp3	4930533O14Rik|C86324|DPP III	dipeptidylpeptidase 3	protein-coding	2.0	4.0	3.5	8.0	5.5	8.5
Merged-chr15-58261784-4	chr15	58261267	58262267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4A|LINE|L1	-46875.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77266425-4	chr10	77265924	77266924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030262, intron 6 of 8)	intron (NM_030262, intron 6 of 8)	7124.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-6542339-4	chr6	6541834	6542834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	36324.0	NM_009169	20422.0	Mm.2469	NM_009169	ENSMUSG00000042541	Sem1	DSS1|Shfdg1|Shfg|Shfm1	SEM1, 26S proteasome complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-81670261-6	chr17	81669704	81670704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	CpG	68183.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106058756-4	chr8	106058221	106059221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010901)	promoter-TSS (NM_010901)	-882.0	NM_010901	18021.0	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53567394-2	chr19	53566894	53567894	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4A|LTR|ERVK	-33002.0	NM_007790	13006.0	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-127242999-4	chr1	127242513	127243513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	38027.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74830011-4	chr11	74829514	74830514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010813)	promoter-TSS (NM_010813)	-910.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	66.0	175.5	131.5	112.5	190.0	166.0
Merged-chr5-93268163-4	chr5	93267651	93268651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007635, intron 1 of 7)	CpG	578.0	NM_007635	12452.0	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	13.0	48.0	14.0	0.0	9.5	2.5
Merged-chr5-74535621-4	chr5	74535130	74536130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001159574, exon 1 of 16)	5' UTR (NM_001159574, exon 1 of 16)	148.0	NM_001159574	66899.0	Mm.272468	NM_024183	ENSMUSG00000029227	Fip1l1	1300019H17Rik|Rje	FIP1 like 1 (S. cerevisiae)	protein-coding	23.5	66.0	57.5	25.5	68.5	57.5
Merged-chr10-80930572-4	chr10	80930078	80931078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008655, intron 2 of 3)	CpG-1325	487.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19604479-4	chr7	19603979	19604979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_125835)	promoter-TSS (NR_125835)	7.0	NR_125832	53609.0	Mm.20913	NM_016680	ENSMUSG00000061028	Clasrp	Clasp|Sfrs16|Srsf16|Swap2	CLK4-associating serine/arginine rich protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-103649158-4	chr6	103648640	103649640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007697, intron 4 of 26)	SYNREP_MM|Satellite|Satellite	138264.0	NM_007697	12661.0	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83005011-4	chr6	83004479	83005479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 5 of 9)	intron (NM_033079, intron 5 of 9)	28492.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	61.0	145.0	117.5	36.5	168.0	108.0
Merged-chr19-46506502-4	chr19	46506007	46507007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	4859.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	34.5	92.5	73.0	44.0	80.5	87.0
Merged-chr1-138940602-4	chr1	138940102	138941102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA8|LINE|L1	-23107.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-154032834-4	chr1	154032323	154033323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	132894.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155705022-4	chr4	155704472	155705472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026899, exon 1 of 5)	5' UTR (NM_026899, exon 1 of 5)	157.0	NM_026899	68991.0	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	122.5	169.0	197.5	108.5	256.5	147.0
Merged-chr19-53390692-4	chr19	53390188	53391188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356986)	promoter-TSS (NM_001356986)	-54.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35462824-4	chr12	35462337	35463337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72152.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	16.0	24.5	16.0	28.0	67.0	47.0
Merged-chr17-47012842-2	chr17	47012342	47013342	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2310.0	NM_001177374	224826.0	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr14-60273874-4	chr14	60273386	60274386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144843, intron 1 of 13)	intron (NM_144843, intron 1 of 13)	8681.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39810949-4	chr6	39810453	39811453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001010930)	promoter-TSS (NM_001010930)	-17.0	NM_001010930	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-177957300-4	chr2	177956817	177957817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282028)	promoter-TSS (NM_001282028)	-29.0	NM_001190302	665211.0	Mm.441314	NM_001190302	ENSMUSG00000078862	Gm14326	-	predicted gene 14326	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80852212-4	chr12	80851701	80852701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 3 of 6)	intron (NM_001242419, intron 3 of 6)	61669.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45527865-2	chr7	45527351	45528351	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_148927, intron 1 of 19)	B3|SINE|B2	1521.0	NM_148927	69217.0	Mm.274158	NM_148927	ENSMUSG00000040428	Plekha4	2410005C22Rik|C88169|Pepp1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-40953827-4	chr15	40953307	40954307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356998, intron 3 of 6)	intron (NM_001356998, intron 3 of 6)	-219894.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-16896504-4	chr16	16896012	16897012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176833)	promoter-TSS (NM_176833)	43.0	NM_176833	68606.0	Mm.230296	NM_176833	ENSMUSG00000026181	Ppm1f	1110021B16Rik|4933427B07Rik|CaMKPase|Popx2|mKIAA0015	protein phosphatase 1F (PP2C domain containing)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-60362335-2	chr6	60361835	60362835	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_015565, intron 1 of 1)	RLTR50B|LTR|ERVK	41372.0	NR_015565	208079.0	Mm.131226	NM_177329	ENSMUSG00000046764	A530053G22Rik	-	RIKEN cDNA A530053G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126202832-4	chr4	126202336	126203336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146153)	promoter-TSS (NM_146153)	-126.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	189.0	480.5	256.5	169.0	473.0	310.5
Merged-chr17-46640124-4	chr17	46639614	46640614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357130, intron 4 of 15)	intron (NM_001357130, intron 4 of 15)	5966.0	NM_001357130	74764.0	Mm.279599	NM_029091	ENSMUSG00000003546	Klc4	1200014P03Rik|AA408085|AW146303|Knsl8	kinesin light chain 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-138442760-1	chr3	138442260	138443260	+	1000.0	f0_c57.idr	promoter-TSS (NM_007410)	promoter-TSS (NM_007410)	-333.0	NM_007410	11532.0	Mm.3874	NM_007410	ENSMUSG00000028138	Adh5	Adh-5|Adh3|GSNOR	alcohol dehydrogenase 5 (class III), chi polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107783503-4	chr3	107783002	107784002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23033.0	NM_001113529	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	0.0	2.0	6.0	0.0	4.0	0.0
Merged-chr6-129472851-4	chr6	129472347	129473347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132130)	promoter-TSS (NR_132130)	-68.0	NR_132130	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	29.0	75.5	52.0	59.0	67.5	42.5
Merged-chr12-40585801-6	chr12	40585288	40586288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	139735.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-68383050-2	chr2	68382550	68383550	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 5 of 17)	intron (NM_016866, intron 5 of 17)	88931.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-57392698-4	chr1	57392208	57393208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037742, intron 5 of 7)	intron (NM_001037742, intron 5 of 7)	-13840.0	NM_001081181	68115.0	Mm.275428	NM_001081181	ENSMUSG00000025971	Maip1	9430016H08Rik|AA409999|C78988	matrix AAA peptidase interacting protein 1	protein-coding	6.5	28.0	16.0	3.0	17.5	11.0
Merged-chr6-108660520-4	chr6	108660017	108661017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011498)	promoter-TSS (NM_011498)	-112.0	NM_011498	20893.0	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-71817659-4	chr11	71817147	71818147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66632.0	NM_001357965	216881.0	Mm.48648	NM_177618	ENSMUSG00000020811	Wscd1	mKIAA0523	WSC domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132110906-4	chr2	132110399	132111399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	34209.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23738830-4	chr13	23738322	23739322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015786)	promoter-TSS (NM_015786)	15.0	NM_015786	50708.0	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	110.5	154.0	136.0	60.0	160.0	106.0
Merged-chr15-50820377-4	chr15	50819883	50820883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	68666.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	9.0	13.5	16.5	9.0	14.5	16.5
Merged-chr9-3002137-2	chr9	3001637	3002637	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	36606.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96916138-3	chr11	96915642	96916642	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030248, intron 2 of 13)	CpG	372.0	NM_001308183	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65495973-4	chr18	65495497	65496497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	65000.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	33.0	57.5	30.0	65.0	125.0	115.0
Merged-chr10-67611110-4	chr10	67610618	67611618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-39159.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9485440-4	chr18	9484936	9485936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35282.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	9.0	15.5	13.5	30.0	11.0	11.5
Merged-chr7-30650283-4	chr7	30649770	30650770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133693)	promoter-TSS (NM_133693)	-42.0	NM_133693	68035.0	Mm.401747	NM_133693	ENSMUSG00000036733	Rbm42	1700003D06Rik|3100004P22Rik	RNA binding motif protein 42	protein-coding	63.0	217.0	198.0	48.5	209.5	169.0
Merged-chr16-23375082-4	chr16	23374584	23375584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-54049.0	NM_001004151	239766.0	Mm.208751	NM_001004151	ENSMUSG00000033383	Rtp1	Gm1766|Gm604	receptor transporter protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-115682539-4	chr3	115682041	115683041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	32514.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	5.0	3.5	0.0	2.5	3.0	0.0
Merged-chr11-6417094-2	chr11	6416617	6417617	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008907, intron 1 of 4)	intron (NM_008907, intron 1 of 4)	1247.0	NM_008907	268373.0	Mm.5246	NM_008907	ENSMUSG00000071866	Ppia	2700098C05|Cphn|CyP-18|CypA	peptidylprolyl isomerase A	protein-coding	8.5	12.0	17.5	2.5	5.5	6.0
Merged-chr2-30692659-2	chr2	30692159	30693159	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14648.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129033292-4	chr4	129032785	129033785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24986.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91852943-4	chr12	91852460	91853460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3803.0	NM_011344	20338.0	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80348517-4	chr10	80348027	80349027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285435)	promoter-TSS (NM_001285435)	-79.0	NR_104340	66548.0	Mm.71891	NM_025629	ENSMUSG00000043822	Adamtsl5	2010109H09Rik|Thsd6	ADAMTS-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-194976398-4	chr1	194975926	194976926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033564, exon 1 of 5)	non-coding (NR_033564, exon 1 of 5)	533.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51604142-2	chr11	51603642	51604642	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028398)	TTS (NM_028398)	2739.0	NM_001048061	15384.0	Mm.256875	NM_010448	ENSMUSG00000020358	Hnrnpab	3010025C11Rik|CBF-A|Cgbfa|Hnrpab	heterogeneous nuclear ribonucleoprotein A/B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43636346-4	chr7	43635822	43636822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028236, intron 1 of 5)	intron (NM_028236, intron 1 of 5)	1583.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166786780-4	chr2	166786294	166787294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6973.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23677485-4	chr17	23676994	23677994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013749)	promoter-TSS (NM_013749)	-45.0	NM_013749	27279.0	Mm.28518	NM_013749	ENSMUSG00000023905	Tnfrsf12a	AI255180|C87282|Fn14|HPIP|TWEAK-R|TweakR	tumor necrosis factor receptor superfamily, member 12a	protein-coding	5.0	34.0	16.5	12.5	25.0	11.0
Merged-chr10-111465010-4	chr10	111464503	111465503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8224.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23805986-4	chr11	23805493	23806493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35023.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28392307-2	chr7	28391807	28392807	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019458)	promoter-TSS (NM_019458)	383.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-140819616-4	chr6	140819093	140820093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	192708.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-83548329-4	chr9	83547822	83548822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172507)	promoter-TSS (NM_172507)	-16.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-65150045-4	chr14	65149555	65150555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-51949.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0.0	15.5	0.0	0.0	15.5	0.0
Merged-chr13-4663508-2	chr13	4663008	4664008	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54344.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-142021870-4	chr4	142021369	142022369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131014, intron 1 of 1)	ORR1D2|LTR|ERVL-MaLR	3971.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-81965854-4	chr6	81965350	81966350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026490)	promoter-TSS (NM_026490)	99.0	NM_026490	56284.0	Mm.276293	NM_026490	ENSMUSG00000030045	Mrpl19	9030416F12Rik|9130412E02Rik|D6Ertd157e|MRP-L15|RLX1|Rpml15	mitochondrial ribosomal protein L19	protein-coding	5.5	8.5	1.0	0.0	8.0	2.5
Merged-chr15-25303228-4	chr15	25302700	25303700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110564.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	4.0	9.0	11.0
Merged-chr9-7825055-4	chr9	7824540	7825540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007465, intron 4 of 7)	intron (NM_007465, intron 4 of 7)	11766.0	NM_001291503	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87651623-4	chr1	87651118	87652118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	MTC|LTR|ERVL-MaLR	31306.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115199352-2	chr11	115198866	115199866	+	1000.0	f0_c57.idr|f1_balb.idr	intron (NM_001033393, intron 3 of 9)	intron (NM_001033393, intron 3 of 9)	11879.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	87.0	241.0	143.0	43.0	85.5	52.5
Merged-chr5-139406237-4	chr5	139405735	139406735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177000)	promoter-TSS (NM_177000)	-152.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-42914666-2	chr16	42914166	42915166	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285805, intron 1 of 10)	intron (NM_001285805, intron 1 of 10)	-2596.0	NR_040402	100503040.0	Mm.490721	NR_040402		Gm19522	-	predicted gene, 19522	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27926052-4	chr15	27925537	27926537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	99811.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-75275942-4	chr4	75275448	75276448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	2344.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103383356-4	chr3	103382861	103383861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	104068.0	NM_053170	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	4.5	5.5	8.0	6.0	4.0	9.0
Merged-chr10-120141315-4	chr10	120140814	120141814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028679)	TTS (NM_028679)	-28349.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-109931658-4	chr9	109931159	109932159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008633)	promoter-TSS (NM_008633)	-115.0	NM_001205331	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135315442-4	chr4	135314951	135315951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	37763.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59202517-4	chr15	59202011	59203011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104437.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	11.0	31.5	34.0	14.5	46.0	34.0
Merged-chr1-171917678-4	chr1	171917195	171918195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_030710, exon 1 of 8)	5' UTR (NM_030710, exon 1 of 8)	233.0	NM_001347186	30925.0	Mm.486404	NM_030710	ENSMUSG00000015314	Slamf6	KAL1|KAL1b|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding	17.5	21.5	13.5	5.5	18.5	12.5
Merged-chr5-53826128-4	chr5	53825635	53826635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144517, intron 1 of 20)	intron (NM_144517, intron 1 of 20)	16508.0	NM_144517	67249.0	Mm.28823	NM_144517	ENSMUSG00000039178	Tbc1d19	2810453K03Rik	TBC1 domain family, member 19	protein-coding	2.5	7.0	5.5	0.0	4.0	1.0
Merged-chr6-71963825-4	chr6	71963325	71964325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009088, exon 22 of 34)	exon (NM_009088, exon 22 of 34)	54772.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128506100-4	chr8	128505600	128506600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008737)	TTS (NM_008737)	146859.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-90241192-4	chr11	90240678	90241678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER67B|LTR|ERV1	-8298.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92640644-4	chr1	92640155	92641155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163425, intron 1 of 2)	intron (NM_001163425, intron 1 of 2)	1293.0	NR_028108	66915.0	Mm.30179	NM_001163425	ENSMUSG00000073616	Cops9	1110002M09Rik|Myeov2	COP9 signalosome subunit 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46762318-2	chr19	46761818	46762818	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_033569, exon 1 of 8)	exon (NM_033569, exon 1 of 8)	709.0	NM_001102471	94219.0	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	0.0	3.5	1.5	1.0	4.5	12.0
Merged-chr10-66932772-4	chr10	66932275	66933275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12391.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-83984196-4	chr18	83983688	83984688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	102374.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6444215-2	chr11	6443709	6444709	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_029938, intron 1 of 4)	CpG	234.0	NM_029938	77605.0	Mm.27624	NM_029938	ENSMUSG00000041126	H2afv	C530002L11Rik|H2a.z-2|H2av|Tg(Wnt1-cre)11Rth|Wnt1-Cre|Wnt1::Cre|Wnt1cre	H2A histone family, member V	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-12978189-4	chr7	12977690	12978690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001168561, exon 1 of 5)	5' UTR (NM_001168561, exon 1 of 5)	342.0	NM_001168561	269870.0	Mm.62083	NM_175558	ENSMUSG00000033961	Zfp446	A630035I11Rik|A930031C22|AA120513|AV306632	zinc finger protein 446	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133582083-1	chr4	133581583	133582583	+	1000.0	f1_c57bl6.idr	intron (NM_172876, intron 4 of 6)	B3|SINE|B2	-2290.0	NM_001290742	100210.0	Mm.274001	NM_133884	ENSMUSG00000028848	Gpn2	AI838661|Atpbd1b|R74630	GPN-loop GTPase 2	protein-coding	5.5	7.0	10.0	4.0	10.0	11.5
Merged-chr16-91582697-2	chr16	91582198	91583198	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030018, intron 3 of 6)	intron (NM_030018, intron 3 of 6)	14982.0	NM_030018	77975.0	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	0.0	2.5	0.0	0.0	3.0	0.0
Merged-chr8-70806716-4	chr8	70806221	70807221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1728.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	23.0	46.0	31.0	31.5	65.5	45.0
Merged-chr11-75453780-2	chr11	75453280	75454280	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_138950, exon 1 of 10)	exon (NM_138950, exon 1 of 10)	937.0	NM_138950	192652.0	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-117479185-4	chr12	117478680	117479680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37299.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	22.5	17.5	15.0	9.5	16.5	24.5
Merged-chr11-97041071-1	chr11	97040571	97041571	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_001357808)	promoter-TSS (NM_001357808)	298.0	NM_027026	69297.0	Mm.250465	NM_027026	ENSMUSG00000020878	Lrrc46	1700006D24Rik	leucine rich repeat containing 46	protein-coding	0.0	2.5	0.5	0.0	1.5	0.0
Merged-chr17-83514457-7	chr17	83513944	83514944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159529)	promoter-TSS (NM_001159529)	-111.0	NM_001159529	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5065285-4	chr11	5064783	5065783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190406)	promoter-TSS (NM_001190406)	44.0	NM_144560	78926.0	Mm.44591	NM_030228	ENSMUSG00000034201	Gas2l1	4930500E24Rik|D0Jmb1|Gar22|TU-71.1	growth arrest-specific 2 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11772461-2	chr19	11771961	11772961	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025606, intron 2 of 3)	Lx5c|LINE|L1	2046.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	0.5	2.5	1.5	2.5	11.0	5.0
Merged-chr15-81514385-4	chr15	81513889	81514889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48073.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-15946016-4	chr7	15945522	15946522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133831)	promoter-TSS (NM_133831)	86.0	NM_133831	68077.0	Mm.277634	NM_133831	ENSMUSG00000041560	Nop53	5330430H08Rik|9430097C02Rik|AU041936|AW536441|Gltscr2|PICT-1|R74911	NOP53 ribosome biogenesis factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51277448-4	chr3	51276977	51277977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291063)	promoter-TSS (NM_001291063)	37.0	NM_001291063	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13109770-4	chr16	13109270	13110270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015769)	promoter-TSS (NM_015769)	34.0	NM_015769	50505.0	Mm.287837	NM_015769	ENSMUSG00000022545	Ercc4	AI606920|Xpf	excision repair cross-complementing rodent repair deficiency, complementation group 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-53838419-6	chr1	53837973	53838973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 23 of 28)	intron (NM_001001883, intron 23 of 28)	-10951.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	32.0	96.5	34.5	39.0	100.5	47.5
Merged-chr9-65536876-2	chr9	65536376	65537376	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	43211.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78573220-4	chr15	78572743	78573743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009008)	promoter-TSS (NM_009008)	-460.0	NM_009008	19354.0	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	Rac family small GTPase 2	protein-coding	34.5	112.5	80.5	34.0	118.5	83.5
Merged-chr5-33652481-5	chr5	33651909	33652909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001356983)	TTS (NM_001356983)	165.0	NM_001289725	20492.0	Mm.4172	NM_009193	ENSMUSG00000004642	Slbp	-	stem-loop binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-36265419-4	chr8	36264920	36265920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15904.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	5.5	3.0	12.5	0.5	6.0	5.0
Merged-chr14-66844795-4	chr14	66844287	66845287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009955, intron 3 of 13)	intron (NM_009955, intron 3 of 13)	23813.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	43.5	73.5	35.0	19.0	16.0	13.5
Merged-chr14-73122698-4	chr14	73122216	73123216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19794.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-92434188-4	chr2	92433683	92434683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009963)	promoter-TSS (NM_009963)	-114.0	NM_009963	12953.0	Mm.254181	NM_009963	ENSMUSG00000068742	Cry2	AV006279|D130054K12Rik	cryptochrome 2 (photolyase-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88336578-4	chr10	88336074	88337074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 4 of 6)	MER31A|LTR|ERV1	20501.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	13.0	59.0	34.0	14.0	65.5	37.5
Merged-chr15-81400099-4	chr15	81399580	81400580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347075)	promoter-TSS (NM_001347075)	-58.0	NM_177310	321003.0	Mm.390833	NM_177310	ENSMUSG00000022401	Xpnpep3	APP3|E430012M05Rik	X-prolyl aminopeptidase 3, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92752019-4	chr1	92751538	92752538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79607.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97826878-4	chr6	97826379	97827379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	19821.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	22.5	21.0	35.5	17.5	46.0	29.0
Merged-chr10-26780776-4	chr10	26780257	26781257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	8245.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-3706895-4	chr16	3706409	3707409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001161790)	TTS (NM_001161790)	11215.0	NM_001161790	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153214868-4	chr2	153214355	153215355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10586.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155096881-4	chr1	155096394	155097394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010500, exon 1 of 1)	3' UTR (NM_010500, exon 1 of 1)	2742.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3855869-2	chr12	3855369	3856369	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 3 of 22)	intron (NM_007872, intron 3 of 22)	6375.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-39308771-1	chr8	39308271	39309271	+	1000.0	f0_balb.idr	intron (NR_044988, intron 2 of 3)	intron (NR_044988, intron 2 of 3)	10791.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	7.5	12.5	8.5	31.0	51.5	65.0
Merged-chr3-36000682-4	chr3	36000185	36001185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023644)	promoter-TSS (NM_023644)	-7.0	NM_023644	72039.0	Mm.249016	NM_023644	ENSMUSG00000027709	Mccc1	1810045E08Rik|2310058B18Rik|MCCalpha|Mcca|R75106	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100469025-4	chr15	100468529	100469529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357982)	promoter-TSS (NM_001357982)	18.0	NM_134093	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	0.0	1.5	13.5	0.0	6.5	0.5
Merged-chr5-65991385-4	chr5	65990874	65991874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027961, intron 4 of 6)	ORR1B1|LTR|ERVL-MaLR	12911.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0.5	6.5	5.0	0.5	6.5	5.0
Merged-chr5-98034464-4	chr5	98033918	98034918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3456.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	0.0	19.0	3.0	2.5	2.0	3.5
Merged-chr6-148214950-4	chr6	148214460	148215460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015615, intron 1 of 1)	intron (NR_015615, intron 1 of 1)	-2586.0	NM_001286560	67456.0	Mm.59812	NM_026168	ENSMUSG00000030304	Ergic2	1200009B18Rik|4930572C01Rik|AA408438|Ptx1	ERGIC and golgi 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-69201552-4	chr17	69201034	69202034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	B4A|SINE|B4	42178.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126228241-4	chr4	126227741	126228741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25531.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	5.5	6.5	11.0	12.0	15.5	6.0
Merged-chr13-99337699-4	chr13	99337217	99338217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026873, intron 3 of 9)	MIRb|SINE|MIR	6961.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	64.0	106.5	67.0	47.0	85.0	84.0
Merged-chr7-141194071-4	chr7	141193580	141194580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130443)	promoter-TSS (NM_001130443)	-50.0	NM_001172065	70552.0	Mm.45104	NM_153777	ENSMUSG00000038637	Lrrc56	5730427C23Rik|BB110509|mFLJ00101	leucine rich repeat containing 56	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-70288510-2	chr10	70288010	70289010	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	43234.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-140566975-4	chr4	140566472	140567472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001112723, intron 16 of 26)	intron (NM_001112723, intron 16 of 26)	81784.0	NM_001112723	72754.0	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	0.0	10.0	0.5	0.0	4.0	1.0
Merged-chr15-96936964-4	chr15	96936479	96937479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83380.0	NM_001358060	69354.0	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62047182-2	chr15	62046682	62047682	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	ID4_|SINE|ID	7925.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-17638773-2	chr18	17638273	17639273	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57783.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87916147-4	chr6	87915653	87916653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173737, intron 2 of 6)	intron (NM_173737, intron 2 of 6)	2177.0	NM_173737	232210.0	Mm.246241	NM_173737	ENSMUSG00000030060	Hmces	8430410A17Rik|C85376	5-hydroxymethylcytosine (hmC) binding, ES cell specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126616030-4	chr8	126615517	126616517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22581.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	3.5	4.5	4.0	1.0	7.0	4.0
Merged-chr11-3165576-3	chr11	3165111	3166111	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030207, exon 8 of 33)	exon (NM_030207, exon 8 of 33)	27852.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122571482-4	chr6	122570974	122571974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17665.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19229414-2	chr7	19228914	19229914	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207525, intron 1 of 1)	intron (NM_207525, intron 1 of 1)	1025.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	40.0	95.5	81.0	15.0	101.5	55.0
Merged-chr19-8020112-4	chr19	8019654	8020654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54127.0	NM_001361980	171405.0	Mm.326517	NM_134256	ENSMUSG00000067656	Slc22a27	OAT6-L|OAT6-S|Oat9	solute carrier family 22, member 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166697484-4	chr2	166696988	166697988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	16344.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4497464-2	chr7	4496964	4497964	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029834, exon 2 of 22)	exon (NM_029834, exon 2 of 22)	4216.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-73193306-4	chr11	73192816	73193816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357891, intron 3 of 11)	intron (NM_001357891, intron 3 of 11)	5703.0	NM_031251	83429.0	Mm.259852	NM_031251	ENSMUSG00000005949	Ctns	AI195360|AW049661	cystinosis, nephropathic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50378101-4	chr6	50377461	50378461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163645, intron 2 of 21)	L1MB1|LINE|L1	4876.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	172.0	392.0	253.0	107.0	213.5	191.0
Merged-chr7-38189675-4	chr7	38189153	38190153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085385, intron 2 of 3)	intron (NM_001085385, intron 2 of 3)	5866.0	NM_028166	72244.0	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	6.5	26.0	11.5	8.0	6.5	8.5
Merged-chr4-149426622-4	chr4	149426014	149427014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_022022, exon 1 of 27)	5' UTR (NM_022022, exon 1 of 27)	117.0	NM_022022	63958.0	Mm.415260	NM_022022	ENSMUSG00000028960	Ube4b	4930551I19Rik|4933406G05Rik|AU014668|D4Bwg0973e|UFD2|UFD2a|Ufd2p|mKIAA0684	ubiquitination factor E4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35498968-4	chr18	35498445	35499445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030749)	promoter-TSS (NM_030749)	-20.0	NM_030749	81500.0	Mm.291482	NM_030749	ENSMUSG00000024357	Sil1	1810057E01Rik|AI042831|wz	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72139717-4	chr6	72139223	72140223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 3 of 6)	intron (NM_001035228, intron 3 of 6)	-16526.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21127580-4	chr19	21127085	21128085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22875.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35109897-2	chr2	35109397	35110397	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_012018, intron 1 of 43)	intron (NM_012018, intron 1 of 43)	405.0	NM_012018	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-35728120-4	chr5	35727633	35728633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359895, intron 1 of 17)	intron (NM_001359895, intron 1 of 17)	1143.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29007949-3	chr7	29007436	29008436	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009109, intron 101 of 105)	PB1D9|SINE|Alu	25082.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	0.0	28.0	9.5	76.5	214.5	160.0
Merged-chr7-139233902-4	chr7	139233390	139234390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027164, intron 8 of 10)	intron (NM_027164, intron 8 of 10)	-14592.0	NM_001033206	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	8.0	11.0	7.5	8.0	32.0	16.0
Merged-chr3-97994228-4	chr3	97993735	97994735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19303.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3647223-4	chr4	3646733	3647733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9273.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	25.0	77.5	36.0	51.0	74.5	41.0
Merged-chr7-67372858-4	chr7	67372368	67373368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291191)	promoter-TSS (NM_001291191)	-10.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107555282-4	chr9	107554788	107555788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019713, intron 1 of 4)	intron (NM_019713, intron 1 of 4)	705.0	NM_019713	56289.0	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	134.5	349.5	274.0	152.0	414.5	249.5
Merged-chr13-73160499-2	chr13	73159999	73160999	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68601.0	NR_126459	75361.0	Mm.385732	NR_126459		4930555K05Rik	-	RIKEN cDNA 4930555K05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120116472-4	chr5	120115966	120116966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028762)	promoter-TSS (NM_028762)	-47.0	NM_028762	74111.0	Mm.41022	NM_028762	ENSMUSG00000029594	Rbm19	1200009A02Rik|AV302714|NPO	RNA binding motif protein 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100022724-4	chr12	100022214	100023214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	58215.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111271736-4	chr9	111271241	111272241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026810)	promoter-TSS (NM_026810)	-104.0	NM_175266	77781.0	Mm.209005	NM_175266	ENSMUSG00000046785	Epm2aip1	A930003G21Rik|mKIAA0766	EPM2A (laforin) interacting protein 1	protein-coding	29.0	75.0	34.5	33.0	72.5	38.5
Merged-chr3-108562455-4	chr3	108561959	108562959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026198)	promoter-TSS (NM_026198)	7.0	NM_026198	67495.0	Mm.32615	NM_026198	ENSMUSG00000068732	Tmem167b	2010200O16Rik	transmembrane protein 167B	protein-coding	4.0	32.0	31.0	7.5	46.5	24.0
Merged-chr11-75268054-4	chr11	75267534	75268534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177708)	TTS (NM_177708)	74041.0	NM_177708	237847.0	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	0.0	0.0	0.0	0.0	6.5	0.0
Merged-chr3-127572735-4	chr3	127572231	127573231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197997, intron 7 of 25)	intron (NM_197997, intron 7 of 25)	19242.0	NM_197997	71643.0	Mm.274884	NM_197997	ENSMUSG00000051278	Zgrf1	4930422G04Rik|AI448607	zinc finger, GRF-type containing 1	protein-coding	11.0	11.5	4.0	2.5	9.5	9.0
Merged-chr10-67290785-4	chr10	67290279	67291279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5498.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137672113-4	chr5	137671622	137672622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303271, intron 1 of 12)	intron (NM_001303271, intron 1 of 12)	12631.0	NM_001303271	231801.0	Mm.260869	NM_145566	ENSMUSG00000029722	Agfg2	A630095P14Rik|Hrbl|RAB-R|RABR	ArfGAP with FG repeats 2	protein-coding	1.5	13.0	5.5	1.5	13.0	5.5
Merged-chr16-93883842-4	chr16	93883351	93884351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028083)	promoter-TSS (NM_028083)	-50.0	NM_028083	110749.0	Mm.274222	NM_028083	ENSMUSG00000022945	Chaf1b	2600017H24Rik|C76145|CAF-I p60|CAF-Ip60|CAF1|CAF1A|CAF1P60|MPHOSPH7	chromatin assembly factor 1, subunit B (p60)	protein-coding	10.0	17.0	7.0	6.5	2.5	10.0
Merged-chr6-100272195-4	chr6	100271719	100272719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019743, intron 2 of 4)	intron (NM_019743, intron 2 of 4)	15139.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103272738-4	chr15	103272221	103273221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357748)	promoter-TSS (NM_001357748)	-167.0	NM_019817	56447.0	Mm.29473	NM_019817	ENSMUSG00000060992	Copz1	5930435A22Rik|AA407760|D4Ertd360e	coatomer protein complex, subunit zeta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-102683954-4	chr13	102683450	102684450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9597.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117476807-2	chr8	117476303	117477303	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17538.0	NR_106046	102465653.0		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102467240-4	chr11	102466736	102467736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010575, intron 4 of 29)	CpG	2647.0	NM_010575	16399.0	Mm.26646	NM_010575	ENSMUSG00000034664	Itga2b	AI172977|CD41|CD41B|GpIIb|alphaIIb	integrin alpha 2b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78244156-4	chr10	78243675	78244675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081055, intron 1 of 22)	CpG	467.0	NM_001081055	216131.0	Mm.27539	NM_001081055	ENSMUSG00000000374	Trappc10	B230307C21Rik|Gm870|Tmem1|b2b2416Clo|b2b2613Clo	trafficking protein particle complex 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62792370-4	chr10	62791859	62792859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026201)	promoter-TSS (NM_026201)	9.0	NM_026201	67500.0	Mm.196371	NM_026201	ENSMUSG00000020074	Ccar1	2610511G16Rik|9430036H15Rik|Carp1	cell division cycle and apoptosis regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25570522-4	chr9	25570023	25571023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 3 of 7)	intron (NM_026189, intron 3 of 7)	88926.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-13648069-4	chr1	13647614	13648614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145381, intron 2 of 6)	intron (NM_145381, intron 2 of 6)	12395.0	NM_145381	212442.0	Mm.89572	NM_145381	ENSMUSG00000025937	Lactb2	Cgi-83|E430032H21Rik	lactamase, beta 2	protein-coding	0.0	0.0	3.5	9.5	7.0	11.5
Merged-chr7-130519611-4	chr7	130519089	130520089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136054)	promoter-TSS (NM_001136054)	-9.0	NM_013799	11907.0	Mm.216321	NM_013799	ENSMUSG00000030850	Ate1	AI225793|AW547406	arginyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131252763-4	chr1	131252336	131253336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7658.0	NM_018750	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	7.5	27.0	22.0	12.5	24.5	9.0
Merged-chr12-3667026-4	chr12	3666504	3667504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 8 of 17)	L1M4|LINE|L1	94020.0	NM_007886	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58214995-4	chr15	58214482	58215482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026346)	promoter-TSS (NM_026346)	-90.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-144904170-4	chr4	144903650	144904650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	11013.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-123077366-2	chr10	123076866	123077866	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153395)	promoter-TSS (NM_153395)	-861.0	NM_001163025	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35902544-4	chr16	35902054	35903054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31172.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53343348-4	chr15	53342857	53343857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	2826.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35109524-4	chr2	35109023	35110023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012018)	promoter-TSS (NM_012018)	31.0	NM_012018	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111695045-2	chr12	111694545	111695545	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16940.0	NM_177374	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5260021-4	chr17	5259537	5260537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 5 of 19)	L1MD3|LINE|L1	158730.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-143789098-2	chr1	143788598	143789598	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019562, intron 3 of 10)	B3|SINE|B2	11820.0	NM_019562	56207.0	Mm.261004	NM_019562	ENSMUSG00000018189	Uchl5	5830413B11Rik|Uch37	ubiquitin carboxyl-terminal esterase L5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148681055-4	chr2	148680547	148681547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028986)	promoter-TSS (NM_028986)	-73.0	NM_001355689	74533.0	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32965818-4	chr17	32965311	32966311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033585)	promoter-TSS (NR_033585)	-20.0	NM_153063	224691.0	Mm.328953	NM_153063	ENSMUSG00000053600	Zfp472	KRIM-1|Krim-1A|Krim-1B|Krim1	zinc finger protein 472	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25505433-4	chr14	25504952	25505952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 2 of 23)	intron (NM_183208, intron 2 of 23)	-28987.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26941697-4	chr2	26941193	26942193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198628, intron 5 of 18)	intron (NM_198628, intron 5 of 18)	7624.0	NM_198628	279029.0	Mm.330079	NM_198628	ENSMUSG00000049897	Stkld1	Gm711|Sgk071	serine/threonine kinase-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69632786-4	chr11	69632295	69633295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011814)	promoter-TSS (NM_011814)	-176.0	NM_011814	23879.0	Mm.41930	NM_011814	ENSMUSG00000018765	Fxr2	Fxr2h	fragile X mental retardation, autosomal homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180582681-4	chr2	180582157	180583157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151482, exon 2 of 5)	non-coding (NR_151482, exon 2 of 5)	1435.0	NR_151482	73247.0	Mm.426558	NM_028479	ENSMUSG00000027569	Mrgbp	1600027N09Rik|AW060503|C80444	MRG/MORF4L binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37639320-4	chr1	37638809	37639809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028096, intron 2 of 9)	intron (NM_028096, intron 2 of 9)	80502.0	NM_028096	72097.0	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81400907-4	chr13	81400407	81401407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 77 of 89)	intron (NM_054053, intron 77 of 89)	232237.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24902091-4	chr7	24901584	24902584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008488)	promoter-TSS (NM_008488)	-902.0	NM_001130150	16801.0	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-12008218-4	chr4	12007709	12008709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41635.0	NR_040577	100503636.0	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154791874-4	chr2	154791396	154792396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139513, intron 1 of 8)	CpG	786.0	NM_001139511	19383.0	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	7.0	3.0	6.5	0.5	18.5	13.5
Merged-chr8-117452218-2	chr8	117451718	117452718	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106045)	promoter-TSS (NR_106045)	-805.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87541142-4	chr6	87540645	87541645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7886.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191741237-4	chr1	191740733	191741733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134829, intron 2 of 7)	intron (NM_001134829, intron 2 of 7)	22838.0	NM_001134829	226856.0	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-190979340-4	chr1	190978831	190979831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144879)	promoter-TSS (NM_144879)	-35.0	NR_027352	226841.0	Mm.22856	NM_144879	ENSMUSG00000037568	Vash2	B130052G07Rik	vasohibin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80209945-4	chr7	80209449	80210449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 1 of 13)	L4_B_Mam|LINE|RTE-X	11508.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	7.5	25.0	23.5	17.0	5.0	17.0
Merged-chr8-122870518-4	chr8	122870021	122871021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	22147.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	3.0	3.0	7.0	3.5	10.0	2.0
Merged-chr16-62857700-4	chr16	62857211	62858211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011173, intron 1 of 14)	intron (NM_011173, intron 1 of 14)	3404.0	NM_011173	19128.0	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9009912-4	chr4	9009415	9010415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	258591.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	15.0	6.0	2.0	7.0	8.0
Merged-chr15-25896964-4	chr15	25896470	25897470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 3 of 8)	intron (NM_001034851, intron 3 of 8)	-36582.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127643892-4	chr10	127643400	127644400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009284, intron 1 of 21)	intron (NM_009284, intron 1 of 21)	914.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	115.0	126.5	152.5	116.0	176.0	150.0
Merged-chr3-83839249-2	chr3	83838749	83839749	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011905, intron 2 of 2)	intron (NM_011905, intron 2 of 2)	2359.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152283366-4	chr4	152282863	152283863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178406, exon 6 of 6)	exon (NM_178406, exon 6 of 6)	8299.0	NM_008237	15207.0	Mm.3516	NM_008237	ENSMUSG00000028946	Hes3	Hes-3|bHLHb43	hes family bHLH transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116075863-4	chr4	116075365	116076365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025641)	promoter-TSS (NM_025641)	596.0	NM_153521	230654.0	Mm.3655	NM_153521	ENSMUSG00000028703	Lrrc41	AA409966|AW555107|D630045E04Rik|D730026A16Rik|MUF1	leucine rich repeat containing 41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121632091-4	chr9	121631506	121632506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026915, intron 1 of 5)	intron (NM_026915, intron 1 of 5)	9587.0	NM_026915	69032.0	Mm.33351	NM_026915	ENSMUSG00000032530	Lyzl4	1810009N24Rik|AI504271|Lyc4|Lyza	lysozyme-like 4	protein-coding	9.0	19.0	16.5	29.5	15.5	20.5
Merged-chr16-37871404-4	chr16	37870882	37871882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177093, intron 1 of 3)	intron (NM_177093, intron 1 of 3)	2982.0	NM_177093	320184.0	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98674869-7	chr12	98674372	98675372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46730.0	NM_001289574	104871.0	Mm.210053	NM_178914	ENSMUSG00000021007	Spata7	AI661438|B230306G18Rik|HSD3	spermatogenesis associated 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-10203388-2	chr11	10202888	10203888	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	-910628.0	NM_177033	319922.0	Mm.337851	NM_177033	ENSMUSG00000050830	Vwc2	A930041G11Rik|G11|PSST739|UNQ739|cradin	von Willebrand factor C domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103346880-4	chr14	103346379	103347379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207215)	promoter-TSS (NM_207215)	-79.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0.0	1.0	0.0	7.5	6.0	2.5
Merged-chr19-38027040-4	chr19	38026548	38027548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 1 of 53)	intron (NM_001302140, intron 1 of 53)	16529.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	17.5	31.0	24.5	14.0	28.0	14.5
Merged-chr5-90881885-4	chr5	90881390	90882390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9355.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	42.5	66.0	40.0	25.5	55.0	36.5
Merged-chr11-115195141-2	chr11	115194641	115195641	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033393, intron 2 of 9)	intron (NM_001033393, intron 2 of 9)	7654.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	14.0	23.5	12.0	15.0	15.5	7.0
Merged-chr1-36369194-4	chr1	36368689	36369689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310513)	promoter-TSS (NM_001310513)	-8.0	NM_001310513	226976.0	Mm.24734	NM_172652	ENSMUSG00000010453	Kansl3	4632411B12Rik|4932435K23|AI431067|AI647574|C85723|Kiaa1310|mKIAA1310	KAT8 regulatory NSL complex subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-33669788-4	chr1	33669291	33670291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033199)	promoter-TSS (NR_033199)	3.0	NM_008922	19076.0	Mm.27705	NM_008922	ENSMUSG00000026134	Prim2	AI323589	DNA primase, p58 subunit	protein-coding	19.5	88.5	45.0	22.5	89.0	50.5
Merged-chr5-24039640-4	chr5	24039140	24040140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8950.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	206.0	437.5	354.0	156.5	394.0	379.0
Merged-chr7-110221715-4	chr7	110221185	110222185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009302)	promoter-TSS (NM_009302)	-18.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113665533-2	chr6	113665033	113666033	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	27066.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90894417-4	chr5	90893928	90894928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3183.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	12.0	27.0	20.0	7.5	23.0	21.5
Merged-chr2-140784816-4	chr2	140784328	140785328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 3 of 18)	Lx5|LINE|L1	-113352.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75770883-4	chr2	75770380	75771380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61297.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	23.5	60.0	29.0	11.0	15.5	10.5
Merged-chr2-30242756-4	chr2	30242234	30243234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177725, intron 2 of 3)	intron (NM_177725, intron 2 of 3)	4965.0	NM_177725	241296.0	Mm.389232	NM_177725	ENSMUSG00000007476	Lrrc8a	Lrrc8|mKIAA1437	leucine rich repeat containing 8A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-42396254-4	chr6	42395784	42396784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-3954.0	NM_001001452	387514.0	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-22283001-3	chr10	22282502	22283502	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177775, intron 1 of 5)	intron (NM_001177775, intron 1 of 5)	9528.0	NM_001177775	667281.0	Mm.484254	NM_001177775	ENSMUSG00000075297	H60b	EG667281	histocompatibility 60b	protein-coding	11.5	7.0	7.0	21.0	12.0	22.5
Merged-chr17-27555738-4	chr17	27555218	27556218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166536)	promoter-TSS (NM_001166536)	-856.0	NM_001166536	15361.0	Mm.4438	NM_016660	ENSMUSG00000046711	Hmga1	AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy	high mobility group AT-hook 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145340842-4	chr6	145340348	145341348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-46777.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	260.5	528.5	440.0	303.0	644.5	389.0
Merged-chr12-100779584-4	chr12	100779058	100780058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145448, intron 1 of 12)	intron (NM_145448, intron 1 of 12)	501.0	NM_145448	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	56.5	84.0	92.5	64.0	150.0	112.5
Merged-chr14-31583279-4	chr14	31582768	31583768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5885.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150488304-4	chr4	150487795	150488795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 7 of 22)	intron (NM_001085492, intron 7 of 22)	163879.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	1.0	9.5	4.5	0.0	12.0	6.0
Merged-chr16-84834933-4	chr16	84834435	84835435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302216)	promoter-TSS (NM_001302216)	41.0	NM_001358500	11957.0	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	78.0	137.5	115.0	83.5	145.0	121.5
Merged-chr2-132262432-2	chr2	132261932	132262932	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138651)	promoter-TSS (NM_138651)	-716.0	NM_001291040	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146781819-4	chr5	146781258	146782258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	L1M4|LINE|L1	13198.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	33.0	44.0	28.5	22.5	75.5	38.5
Merged-chr16-32247113-4	chr16	32246568	32247568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173439)	promoter-TSS (NM_173439)	-43.0	NM_173439	268882.0	Mm.256137	NM_173439	ENSMUSG00000035764	Fbxo45	2610017J04Rik|AI463119|BC026799	F-box protein 45	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34538105-4	chr5	34537606	34538606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	-5259.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-41083208-4	chr3	41082725	41083725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027558)	promoter-TSS (NM_027558)	-179.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58131704-2	chr13	58131204	58132204	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3148.0	NM_029872	77134.0	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	0.0	1.5	3.0	1.0	0.0	3.0
Merged-chr3-16183126-4	chr3	16182612	16183612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145919)	promoter-TSS (NM_001145919)	-53.0	NM_001358043	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	251.0	469.5	341.5	253.0	474.5	339.5
Merged-chr13-113589735-4	chr13	113589241	113590241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28823.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-127203420-2	chr1	127202920	127203920	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1566.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-77284615-4	chr2	77284117	77285117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAA)n|Simple_repeat|Simple_repeat	-4025.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171044729-5	chr1	171044240	171045240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14654.0	NM_001356511	14131.0	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	54.5	86.5	64.0	19.5	104.0	65.0
Merged-chr3-97736444-2	chr3	97735944	97736944	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 24 of 46)	intron (NM_001039376, intron 24 of 46)	31570.0	NM_178080	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-130546946-4	chr7	130546457	130547457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162855, intron 1 of 10)	CpG	424.0	NM_001162855	67872.0	Mm.21714	NM_001162855	ENSMUSG00000040331	Nsmce4a	2410003A14Rik	NSE4 homolog A, SMC5-SMC6 complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118011914-4	chr2	118011426	118012426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	99276.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	0.5	28.0	6.5	1.0	8.5	2.0
Merged-chr11-94210291-4	chr11	94209790	94210790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1164.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95890337-4	chr13	95889843	95890843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	1579.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	45.0	209.0	144.5	64.0	120.5	92.0
Merged-chr4-150089358-2	chr4	150088858	150089858	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177366, intron 1 of 3)	intron (NM_177366, intron 1 of 3)	1855.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24470274-4	chr17	24469781	24470781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025954)	promoter-TSS (NM_025954)	-192.0	NM_025954	67078.0	Mm.28541	NM_025954	ENSMUSG00000043445	Pgp	1700012G19Rik|AI481330|AUM|G3PP	phosphoglycolate phosphatase	protein-coding	47.5	114.5	100.5	77.5	140.5	116.5
Merged-chr18-83981369-4	chr18	83980873	83981873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105189.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35040780-2	chr9	35040280	35041280	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75948.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	1.5	1.5	2.5	3.5	7.0	2.0
Merged-chr13-45265002-4	chr13	45264501	45265501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124741.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	1.0	16.5	3.5	3.5	45.5	26.5
Merged-chr12-52328220-4	chr12	52327739	52328739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	152370.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	8.0	1.0	3.0	1.0	11.5	8.5
Merged-chr1-191125981-4	chr1	191125481	191126481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	27567.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	74.0	150.5	121.5	49.5	93.0	60.0
Merged-chr17-15826640-4	chr17	15826152	15827152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178615)	promoter-TSS (NM_178615)	-66.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	6.0	20.0	5.5	6.0	20.0	5.5
Merged-chr16-22436306-4	chr16	22435796	22436796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358428, intron 2 of 12)	intron (NM_001358428, intron 2 of 12)	2072.0	NM_001358428	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125254296-4	chr6	125253807	125254807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-11218.0	NR_015527	73870.0	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-127617462-4	chr5	127616959	127617959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133895)	promoter-TSS (NM_133895)	-67.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63081179-2	chr14	63080679	63081679	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26106.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121594097-4	chr5	121593599	121594599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308450)	promoter-TSS (NM_001308450)	-275.0	NM_001308450	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-11995300-7	chr15	11994808	11995808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011294, intron 1 of 4)	CpG	699.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66593147-4	chr9	66592668	66593668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302116)	promoter-TSS (NM_001302116)	-53.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111808936-2	chr13	111808436	111809436	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011945)	promoter-TSS (NM_011945)	57.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	15.5	44.5	48.5	0.0	1.5	19.0
Merged-chr4-40949495-2	chr4	40948995	40949995	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029814, exon 2 of 8)	exon (NM_029814, exon 2 of 8)	942.0	NM_029814	76959.0	Mm.212763	NM_029814	ENSMUSG00000028419	Chmp5	2210412K09Rik|AW545668	charged multivesicular body protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102242476-2	chr7	102241936	102242936	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019566, intron 1 of 1)	MIRb|SINE|MIR	7682.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	68.5	114.5	80.5	42.5	97.0	84.0
Merged-chr11-98400351-4	chr11	98399875	98400875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033537, exon 1 of 8)	exon (NM_001033537, exon 1 of 8)	115.0	NM_001033537	320655.0	Mm.86519	NM_001033537	ENSMUSG00000038208	Pgap3	CAB2|D430035D22Rik|Perld1	post-GPI attachment to proteins 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58537978-4	chr9	58537470	58538470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133983, intron 1 of 6)	(A)n|Simple_repeat|Simple_repeat	2970.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60895530-4	chr13	60895013	60896013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001145801, exon 4 of 4)	3' UTR (NM_001145801, exon 4 of 4)	1934.0	NM_007797	13025.0	Mm.30144	NM_007797	ENSMUSG00000074874	Ctla2b	AW545568|Ctla-2b	cytotoxic T lymphocyte-associated protein 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165947774-4	chr2	165947294	165948294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44843.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	104.0	235.0	158.0	85.0	231.5	161.0
Merged-chr18-10030034-4	chr18	10029543	10030543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360884)	promoter-TSS (NM_001360884)	106.0	NM_001038589	59025.0	Mm.329277	NM_021522	ENSMUSG00000047879	Usp14	2610005K12Rik|2610037B11Rik|AW107924|C78769|ax|nmf375	ubiquitin specific peptidase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123906655-4	chr5	123906173	123907173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026603)	promoter-TSS (NM_026603)	-602.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	158.5	283.5	212.0	110.5	403.0	278.0
Merged-chr7-110840533-4	chr7	110840017	110841017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025999, intron 1 of 5)	L3|LINE|CR1	3864.0	NM_025999	67150.0	Mm.96867	NM_025999	ENSMUSG00000030788	Rnf141	2610110L04Rik|AA792898|AU022812|ZFP36|ZNF230	ring finger protein 141	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70002725-2	chr8	70002225	70003225	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-6341.0	NM_145596	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	25.5	85.5	37.0	43.0	81.0	45.5
Merged-chr3-31390153-4	chr3	31389665	31390665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-79846.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-140767489-4	chr6	140766987	140767987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	140602.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6235185-2	chr19	6234685	6235685	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198168, intron 1 of 13)	intron (NM_198168, intron 1 of 13)	655.0	NM_198168	225849.0	Mm.118076	NM_198168	ENSMUSG00000024777	Ppp2r5b	B'beta|BC026670	protein phosphatase 2, regulatory subunit B', beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53083613-2	chr4	53083113	53084113	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 15 of 49)	MIR3|SINE|MIR	71733.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24620196-4	chr16	24619670	24620670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	90856.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36642855-4	chr16	36642340	36643340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	23237.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49371653-4	chr13	49371132	49372132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039179, intron 2 of 6)	intron (NM_001039179, intron 2 of 6)	30083.0	NM_001039180	76895.0	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	BICD cargo adaptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26502483-2	chr17	26501983	26502983	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5989.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	16.5	38.0	46.5	22.5	45.5	41.5
Merged-chr16-56716235-2	chr16	56715735	56716735	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357126, intron 1 of 8)	B1_Mus2|SINE|Alu	1215.0	NM_001357124	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124377376-4	chr5	124376890	124377890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081203, intron 30 of 31)	intron (NM_001081203, intron 30 of 31)	-22762.0	NM_013812	13445.0	Mm.391838	NM_013812	ENSMUSG00000029394	Cdk2ap1	Apc10|Cdkap1|DORC1|Doc1|ST19|doc-1|p12	CDK2 (cyclin-dependent kinase 2)-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103307358-4	chr15	103306855	103307855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030720)	TTS (NM_030720)	3083.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108381504-2	chr3	108381004	108382004	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040560, intron 2 of 2)	intron (NR_040560, intron 2 of 2)	2237.0	NR_040560	100038453.0	Mm.214328	NR_040560	ENSMUSG00000074281	Gm12522	-	predicted gene 12522	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-92822542-4	chr8	92822060	92823060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4737.0	NM_008610	17390.0	Mm.29564	NM_008610	ENSMUSG00000031740	Mmp2	Clg4a|GelA|MMP-2	matrix metallopeptidase 2	protein-coding	3.0	6.5	12.5	3.5	8.5	4.5
Merged-chr18-46612360-4	chr18	46611858	46612858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14654.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30332104-4	chr7	30331569	30332569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9694.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	0.0	4.0	1.0	1.0	0.0	4.0
Merged-chr2-124626626-4	chr2	124626115	124627115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	16319.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155492472-4	chr4	155491987	155492987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160017, intron 1 of 10)	CpG	1126.0	NM_001160016	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	20.0	41.5	36.5	15.0	33.0	22.5
Merged-chr13-41460086-4	chr13	41459576	41460576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	27284.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79181364-4	chr3	79180844	79181844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31575.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	25.0	33.5	34.0	10.0	18.0	12.5
Merged-chr3-103102631-4	chr3	103102138	103103138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-24918.0	NM_177857	329727.0	Mm.293641	NM_177857	ENSMUSG00000007379	Dennd2c	A930010I20Rik	DENN/MADD domain containing 2C	protein-coding	3.0	10.5	1.0	3.0	10.5	1.0
Merged-chr7-98697716-2	chr7	98697216	98698216	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_144495, exon 1 of 1)	non-coding (NR_144495, exon 1 of 1)	5212.0	NR_144495	100040769.0	Mm.126401	NR_144495		Gm15506	-	predicted gene 15506	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99641534-4	chr12	99641027	99642027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13553.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62494315-2	chr10	62493815	62494815	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011157, exon 3 of 3)	3' UTR (NM_011157, exon 3 of 3)	-7510.0	NM_001358543	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59265787-4	chr15	59265299	59266299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41149.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	0.0	8.0	0.0	5.0	9.5	2.0
Merged-chr6-35539864-4	chr6	35539373	35540373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008098)	promoter-TSS (NM_008098)	15.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-137735080-4	chr6	137734573	137735573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011499)	promoter-TSS (NM_011499)	-9.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27552799-2	chr2	27552299	27553299	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37652.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23771200-5	chr11	23770651	23771651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009044)	promoter-TSS (NM_009044)	-181.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106159461-4	chr11	106158921	106159921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001356459, exon 2 of 5)	5' UTR (NM_001356459, exon 2 of 5)	506.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76477357-4	chr15	76476862	76477862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331154)	promoter-TSS (NM_001331154)	0.0	NM_001331153	15499.0	Mm.347444	NM_008296	ENSMUSG00000022556	Hsf1	AA960185|HSTF|HSTF 1|Hsf1alpha|Hsf1beta	heat shock factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-151862594-4	chr4	151862095	151863095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195565)	promoter-TSS (NM_001195565)	-827.0	NM_001195565	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144570820-2	chr3	144570320	144571320	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011828)	promoter-TSS (NM_011828)	393.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116017730-2	chr4	116017230	116018230	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151700, exon 1 of 15)	non-coding (NR_151700, exon 1 of 15)	194.0	NM_010173	14073.0	Mm.256025	NM_010173	ENSMUSG00000034171	Faah	AW412498	fatty acid amide hydrolase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143822958-4	chr7	143822442	143823442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007856)	promoter-TSS (NM_007856)	-90.0	NM_030221	78914.0	Mm.35104	NM_030221	ENSMUSG00000031090	Nadsyn1	9130012B15Rik	NAD synthetase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81304301-4	chr7	81303800	81304800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 8 of 21)	intron (NM_008803, intron 8 of 21)	40934.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.5	5.5	4.0	0.5	2.5	2.0
Merged-chr10-81268198-4	chr10	81267676	81268676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018758)	promoter-TSS (NM_018758)	4.0	NM_018758	57267.0	Mm.293931	NM_018758	ENSMUSG00000004931	Apba3	AW208791|Mint-3|X11gamma|lin-10|mint3	amyloid beta (A4) precursor protein-binding, family A, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117887367-4	chr4	117886843	117887843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033617)	promoter-TSS (NM_033617)	-14.0	NM_033617	114143.0	Mm.207052	NM_033617	ENSMUSG00000033379	Atp6v0b	2310024H13Rik|Atp6f|VMA16	ATPase, H+ transporting, lysosomal V0 subunit B	protein-coding	44.5	104.5	103.5	42.5	97.5	99.0
Merged-chr16-15887255-4	chr16	15886768	15887768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007679)	promoter-TSS (NM_007679)	-18.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-98986340-4	chr9	98985858	98986858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122851)	promoter-TSS (NM_001122851)	-15.0	NM_011810	23873.0	Mm.74605	NM_011810	ENSMUSG00000032463	Faim	-	Fas apoptotic inhibitory molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46818332-4	chr8	46817821	46818821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 5 of 7)	intron (NR_152560, intron 5 of 7)	78576.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95824335-4	chr11	95823836	95824836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153104)	promoter-TSS (NM_153104)	-164.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36345211-4	chr1	36344723	36345723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172652, intron 16 of 20)	intron (NM_172652, intron 16 of 20)	3535.0	NR_105863	102465541.0		NR_105863	ENSMUSG00000098680	Mir6898	Gm27816|mmu-mir-6898	microRNA 6898	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-98014069-2	chr3	98013569	98014569	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	531.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-30592528-4	chr3	30592065	30593065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7305.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109051922-4	chr3	109051432	109052432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24325.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86666004-4	chr6	86665489	86666489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010751, intron 2 of 5)	intron (NM_010751, intron 2 of 5)	3170.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45095719-3	chr9	45095220	45096220	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005421, intron 6 of 10)	intron (NM_001005421, intron 6 of 10)	16537.0	NM_001005421	270152.0	Mm.190461	NM_001005421	ENSMUSG00000048534	Jaml	AMICA|Amica1|Crea7|Gm638	junction adhesion molecule like	protein-coding	0.0	0.5	1.0	0.0	14.5	17.0
Merged-chr9-55296511-4	chr9	55296004	55297004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-12879.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69395568-4	chr8	69395086	69396086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038043)	promoter-TSS (NR_038043)	-42.0	NR_038043	378466.0	Mm.37846	NM_194351	ENSMUSG00000110444	Gm10033	9330175B10Rik|Gm10311	predicted gene 10033	ncRNA	24.0	46.0	32.0	17.5	55.0	43.5
Merged-chr9-106447636-4	chr9	106447143	106448143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110272)	promoter-TSS (NM_001110272)	35.0	NM_001359225	68644.0	Mm.268925	NM_145919	ENSMUSG00000042210	Abhd14a	1110013B16Rik|AW558221|Dorz1	abhydrolase domain containing 14A	protein-coding	7.5	23.5	33.5	19.0	26.5	12.0
Merged-chr1-187215918-2	chr1	187215418	187216418	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028848)	promoter-TSS (NM_028848)	175.0	NM_001357645	67769.0	Mm.138321	NM_026367	ENSMUSG00000039210	Gpatch2	5830433G22Rik|5830436K05Rik|AI427714|AI447508|AW107440|AW491060|Gpatc2	G patch domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55373315-2	chr13	55372815	55373815	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360714, intron 1 of 14)	intron (NM_001360714, intron 1 of 14)	3583.0	NM_016758	51791.0	Mm.1426	NM_016758	ENSMUSG00000052087	Rgs14	RPIP1	regulator of G-protein signaling 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31428366-4	chr14	31427877	31428877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	7723.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-51934993-4	chr2	51934530	51935530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001141982)	promoter-TSS (NM_001141982)	133.0	NM_030243	71684.0	Mm.28309	NM_030243	ENSMUSG00000036249	Rbm43	0610033I05Rik	RNA binding motif protein 43	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-7897319-4	chr17	7896731	7897731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28769.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27475700-4	chr2	27475216	27476216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113574)	promoter-TSS (NM_001113574)	-43.0	NM_001113574	67382.0	Mm.28721	NM_023336	ENSMUSG00000026918	Brd3	2410084F24Rik|AW060456|Fsrg2|ORFX|RINGL3	bromodomain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-85957798-4	chr10	85957278	85958278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145422)	promoter-TSS (NM_145422)	15.0	NM_145422	28088.0	Mm.9257	NM_145422	ENSMUSG00000001783	Rtcb	AI255213|AI463255|D10Wsu52e|FAAP|HSPC117	RNA 2',3'-cyclic phosphate and 5'-OH ligase	protein-coding	0.0	3.5	1.5	0.0	3.5	1.5
Merged-chr7-100242556-4	chr7	100242052	100243052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027629, intron 1 of 13)	intron (NM_027629, intron 1 of 13)	14945.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95663648-2	chr3	95663148	95664148	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008562)	TTS (NM_008562)	4927.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24386483-4	chr2	24385951	24386951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355232)	promoter-TSS (NM_001355232)	-165.0	NM_001355232	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-83273914-4	chr4	83273397	83274397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 2 of 19)	intron (NM_027238, intron 2 of 19)	50292.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	5.5	58.5	41.5	51.0	108.0	57.0
Merged-chr10-14207863-4	chr10	14207362	14208362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	241483.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19015411-4	chr10	19014909	19015909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009397)	promoter-TSS (NM_009397)	1.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	41.0	82.5	109.0	42.5	85.5	80.5
Merged-chr9-21287905-6	chr9	21287382	21288382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145416)	promoter-TSS (NM_145416)	87.0	NM_145416	215194.0	Mm.290690	NM_145416	ENSMUSG00000035047	Kri1	-	KRI1 homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78826565-4	chr11	78826056	78827056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001076681)	promoter-TSS (NM_001076681)	-39.0	NM_001076681	66274.0	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-50024196-4	chr18	50023715	50024715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	-6769.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	15.0	97.0	25.0	39.0	72.0	43.5
Merged-chr15-73632447-4	chr15	73631961	73632961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7717.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-37431525-4	chr6	37430996	37431996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	(CAGAGA)n|Simple_repeat|Simple_repeat	10652.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-78847278-4	chr7	78846763	78847763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029585)	promoter-TSS (NM_029585)	-52.0	NM_029585	76375.0	Mm.250541	NM_029585	ENSMUSG00000030610	Det1	2610034H20Rik	de-etiolated homolog 1 (Arabidopsis)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127391625-2	chr7	127391125	127392125	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_198011, exon 3 of 3)	exon (NM_198011, exon 3 of 3)	1996.0	NM_198011	101604.0	Mm.334241	NM_198011	ENSMUSG00000078580	E430018J23Rik	AI480612	RIKEN cDNA E430018J23 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49205635-4	chr13	49205143	49206143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026738, intron 2 of 5)	MIRb|SINE|MIR	10383.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35135859-1	chr17	35135359	35136359	+	1000.0	f0_c57.idr	intron (NM_001252469, intron 1 of 23)	intron (NM_001252469, intron 1 of 23)	145.0	NM_001252469	224727.0	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135283079-2	chr1	135282572	135283572	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001159624, intron 1 of 9)	intron (NM_001159624, intron 1 of 9)	1012.0	NM_145417	215615.0	Mm.291048	NM_145417	ENSMUSG00000041926	Rnpep	-	arginyl aminopeptidase (aminopeptidase B)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27449440-4	chr7	27448943	27449943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144923, intron 1 of 4)	intron (NM_144923, intron 1 of 4)	1465.0	NM_144923	233016.0	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99884474-4	chr12	99883943	99884943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028354)	promoter-TSS (NM_028354)	-72.0	NM_028354	104884.0	Mm.312323	NM_028354	ENSMUSG00000021177	Tdp1	2810481F14Rik|4921509N21Rik|AI838772|AW493413|E430034L06Rik|MLZ-501|SCAN1	tyrosyl-DNA phosphodiesterase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118275403-4	chr7	118274908	118275908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	31501.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63586321-4	chr4	63585798	63586798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001356354)	TTS (NM_001356354)	14466.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44140645-4	chr16	44140128	44141128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028108, intron 1 of 4)	intron (NM_028108, intron 1 of 4)	819.0	NM_028108	72117.0	Mm.278726	NM_028108	ENSMUSG00000022698	Naa50	2600005K24Rik|2810441M03Rik|AW112078|Mak3|Mak3p|Nat13|Nat5|San	N(alpha)-acetyltransferase 50, NatE catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12117779-4	chr15	12117288	12118288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011767)	promoter-TSS (NM_011767)	-63.0	NM_011767	22763.0	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90283027-4	chr16	90282476	90283476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346799, intron 1 of 19)	intron (NM_001346799, intron 1 of 19)	1510.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-75596358-4	chr12	75595876	75596876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012024)	promoter-TSS (NM_012024)	-176.0	NM_012024	26932.0	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-39517901-4	chr7	39517356	39518356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004139)	promoter-TSS (NM_001004139)	90.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	233.0	592.5	478.5	237.5	524.0	383.0
Merged-chr6-29474052-4	chr6	29473550	29474550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001145360)	TTS (NM_001145360)	2613.0	NM_001145360	668210.0	Mm.420607	NM_001145360	ENSMUSG00000090685	Gm9047	EG668210	predicted gene 9047	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146079432-4	chr6	146078959	146079959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	145337.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123897499-4	chr5	123897003	123898003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9772.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	111.0	261.0	204.0	101.0	239.5	197.0
Merged-chr9-89261953-4	chr9	89261448	89262448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	50564.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	13.5	14.0	21.0	10.5	19.0	14.0
Merged-chr4-47261321-4	chr4	47260805	47261805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 9 of 39)	intron (NM_009928, intron 9 of 39)	53293.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136908612-4	chr5	136908110	136909110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026073, intron 1 of 4)	intron (NM_026073, intron 1 of 4)	460.0	NM_026073	67286.0	Mm.41779	NM_026073	ENSMUSG00000007987	Ift22	3110017O03Rik|AI835745|AI847427|Rabl5	intraflagellar transport 22	protein-coding	25.5	58.0	27.5	35.5	52.5	38.0
Merged-chr15-95804391-4	chr15	95803880	95804880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	13537.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166155611-4	chr2	166155098	166156098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028072)	promoter-TSS (NM_028072)	85.0	NM_001252579	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152768257-4	chr1	152767747	152768747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026369, intron 1 of 3)	intron (NM_026369, intron 1 of 3)	1705.0	NM_026369	67771.0	Mm.288974	NM_026369	ENSMUSG00000008475	Arpc5	5830443F10Rik|p16-Arc	actin related protein 2/3 complex, subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106999059-2	chr11	106998559	106999559	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010655, intron 1 of 10)	intron (NM_010655, intron 1 of 10)	466.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	38.5	52.5	29.5	20.0	25.5	13.5
Merged-chr9-44230277-1	chr9	44229777	44230777	+	1000.0	f1_c57bl6.idr	intron (NM_007619, intron 1 of 15)	intron (NM_007619, intron 1 of 15)	3769.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	12.5	42.5	31.0	16.0	39.5	24.5
Merged-chr17-73067640-4	chr17	73067143	73068143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40342.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	14.0	8.0	11.5	5.0	8.5	9.5
Merged-chr15-100616578-2	chr15	100616063	100617063	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011873, intron 1 of 3)	intron (NM_011873, intron 1 of 3)	901.0	NM_011873	23994.0	Mm.486175	NM_011873	ENSMUSG00000000346	Dazap2	AI314727|Brbp|Gcap28|Prtb|gt6-12|mKIAA0058	DAZ associated protein 2	protein-coding	17.5	40.5	58.5	19.0	89.5	51.5
Merged-chr11-44380853-4	chr11	44380244	44381244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-19319.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	7.5	33.5	33.0	3.5	15.0	19.5
Merged-chr16-90916278-4	chr16	90915749	90916749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18600.0	NM_026502	68001.0	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-151988931-4	chr4	151988401	151989401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145929)	promoter-TSS (NM_001145929)	85.0	NM_175152	69876.0	Mm.226820	NM_175152	ENSMUSG00000039759	Thap3	2010013E08Rik|2210418H06Rik	THAP domain containing, apoptosis associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-70214503-4	chr10	70213934	70214934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304739, intron 1 of 2)	intron (NM_001304739, intron 1 of 2)	9770.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-22811013-4	chr2	22810512	22811512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	36685.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95702488-4	chr16	95701988	95702988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011809)	promoter-TSS (NM_011809)	81.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50361959-4	chr15	50361449	50362449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	527100.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167958992-4	chr2	167958496	167959496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	26669.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38367425-4	chr18	38366916	38367916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28423.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120098818-4	chr11	120098318	120099318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110242)	promoter-TSS (NM_001110242)	-87.0	NM_183137	78777.0	Mm.23672	NM_183137	ENSMUSG00000025377	Tepsin	2410002I01Rik|Enthd2	TEPSIN, adaptor related protein complex 4 accessory protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157007055-4	chr2	157006564	157007564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025853)	promoter-TSS (NM_025853)	11.0	NM_025853	66934.0	Mm.25410	NM_025853	ENSMUSG00000027635	Dsn1	1700022L09Rik|AW552447	DSN1 homolog, MIS12 kinetochore complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102812975-4	chr2	102812484	102813484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001177785, exon 16 of 16)	3' UTR (NM_001177785, exon 16 of 16)	-66224.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	28.5	69.5	48.5	32.5	69.0	49.0
Merged-chr2-91650617-2	chr2	91650117	91651117	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033451)	promoter-TSS (NM_001033451)	499.0	NR_027371	228359.0	Mm.22413	NM_146124	ENSMUSG00000027247	Arhgap1	B230365D05Rik|C76222|Cdc42GAP|p50rhoGAP	Rho GTPase activating protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98754890-4	chr11	98754401	98755401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178060, intron 2 of 8)	intron (NM_178060, intron 2 of 8)	13116.0	NM_001313983	21833.0	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22808622-4	chr8	22808118	22809118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2964.0	NM_001122820	64933.0	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	35.5	172.0	85.0	69.0	90.0	81.5
Merged-chr10-84576503-4	chr10	84575885	84576885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146008)	promoter-TSS (NM_146008)	-562.0	NM_146008	216198.0	Mm.296142	NM_146008	ENSMUSG00000020034	Tcp11l2	E430026E19Rik	t-complex 11 (mouse) like 2	protein-coding	29.0	126.0	102.5	38.5	100.0	72.0
Merged-chr8-122906613-4	chr8	122906145	122907145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037865, intron 4 of 13)	intron (NR_037865, intron 4 of 13)	58271.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103363322-4	chr14	103362832	103363832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16532.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143518355-4	chr5	143517858	143518858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347530, intron 1 of 6)	intron (NM_001347530, intron 1 of 6)	9635.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146592828-4	chr3	146592303	146593303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019957, intron 3 of 6)	intron (NM_019957, intron 3 of 6)	-4346.0	NM_009474	22262.0	Mm.10865	NM_009474	ENSMUSG00000028186	Uox	AI663847	urate oxidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138280194-4	chr5	138279706	138280706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172412)	promoter-TSS (NM_172412)	-269.0	NM_172412	71951.0	Mm.77066	NM_172412	ENSMUSG00000029510	Gpc2	2410016G05Rik	glypican 2 (cerebroglycan)	protein-coding	3.5	0.0	3.5	0.0	0.0	3.0
Merged-chr9-90235516-4	chr9	90235024	90236024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	35245.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33402268-2	chr2	33401768	33402768	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29056.0	NM_001085507	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116684391-2	chr4	116683891	116684891	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_040442)	TTS (NR_040442)	-1208.0	NM_011034	18477.0	Mm.30929	NM_011034	ENSMUSG00000028691	Prdx1	MSP23|NkefA|OSF-3|OSF3|PAG|Paga|PrdxI|PrxI|TDX2|TPxA|Tdpx2|prx1	peroxiredoxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113681531-4	chr6	113681025	113682025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 8 of 11)	intron (NM_001113553, intron 8 of 11)	-15525.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-73128648-4	chr11	73128146	73129146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361245, intron 20 of 30)	B1F|SINE|Alu	9648.0	NM_010353	14841.0	Mm.42045	NM_010353	ENSMUSG00000050107	Haspin	Gsg2	histone H3 associated protein kinase	protein-coding	3.5	7.0	5.5	5.0	9.5	8.0
Merged-chr13-75839850-4	chr13	75839354	75840354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360151)	promoter-TSS (NM_001360151)	-31.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	25.0	85.0	67.5	26.0	66.5	48.0
Merged-chr5-120516659-4	chr5	120516166	120517166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 2 of 13)	intron (NM_001177595, intron 2 of 13)	5474.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16842311-2	chr7	16841811	16842811	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252458)	promoter-TSS (NM_001252458)	-591.0	NM_001252458	101540.0	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108190198-2	chr9	108189698	108190698	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007567, exon 1 of 12)	exon (NM_007567, exon 1 of 12)	185.0	NM_007567	12217.0	Mm.20425	NM_007567	ENSMUSG00000032589	Bsn	-	bassoon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34928795-2	chr17	34928295	34929295	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023557, intron 18 of 20)	intron (NM_023557, intron 18 of 20)	-2458.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70251479-2	chr12	70250979	70251979	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110202, intron 9 of 11)	intron (NM_001110202, intron 9 of 11)	23638.0	NR_045174	414124.0	Mm.416164	NR_045174	ENSMUSG00000085298	F730035M05Rik	-	RIKEN cDNA F730035M05 gene	ncRNA	0.0	0.0	3.0	0.0	0.0	1.0
Merged-chr14-33185541-4	chr14	33185026	33186026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146022)	promoter-TSS (NM_001146022)	-460.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33930387-2	chr17	33929887	33930887	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009059, exon 2 of 18)	exon (NM_009059, exon 2 of 18)	493.0	NM_009059	19732.0	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	11.0	38.0	33.5	13.5	38.5	18.5
Merged-chr4-131910770-4	chr4	131910277	131911277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102393, intron 3 of 4)	RMER15-int|LTR|ERVL	9252.0	NR_102394	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-23237791-4	chr8	23237295	23238295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024240)	promoter-TSS (NM_024240)	-127.0	NM_024240	109145.0	Mm.27945	NM_024240	ENSMUSG00000031546	Gins4	2810037C03Rik|4933405K01Rik|Sld5	GINS complex subunit 4 (Sld5 homolog)	protein-coding	39.5	36.0	40.0	15.0	25.5	31.5
Merged-chr9-56264463-4	chr9	56263982	56264982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172924, intron 3 of 6)	intron (NM_172924, intron 3 of 6)	-103412.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-3330641-2	chr18	3330141	3331141	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110851, intron 1 of 4)	intron (NM_001110851, intron 1 of 4)	-3050.0	NM_001110850	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr2-23068134-4	chr2	23067641	23068641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028793)	promoter-TSS (NM_028793)	-60.0	NR_149742	74159.0	Mm.181973	NM_028793	ENSMUSG00000026781	Acbd5	1300014E15Rik	acyl-Coenzyme A binding domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141865164-1	chr4	141864664	141865664	+	1000.0	f1_balb.idr	intron (NM_025994, intron 1 of 3)	MTE2a|LTR|ERVL-MaLR	9756.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	9.5	19.0	5.0	3.0	8.5	3.5
Merged-chr11-106035788-2	chr11	106035288	106036288	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1084.0	NM_027946	71833.0	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118400747-4	chr11	118400240	118401240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011150, intron 1 of 5)	MLTR14|LTR|ERV1	1219.0	NM_011150	19039.0	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-57619660-4	chr14	57619162	57620162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020506, intron 6 of 22)	intron (NM_020506, intron 6 of 22)	45294.0	NM_020506	57258.0	Mm.202747	NM_020506	ENSMUSG00000021952	Xpo4	B430309A01Rik|mKIAA1721	exportin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65630759-4	chr17	65630243	65631243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	9013.0	NM_153519	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75981829-4	chr2	75981259	75982259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_030188, exon 1 of 1)	5' UTR (NM_030188, exon 1 of 1)	208.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	6.0	15.0	4.5	1.5	3.0	6.0
Merged-chr13-9765026-4	chr13	9764510	9765510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347472)	promoter-TSS (NM_001347472)	-54.0	NM_001347473	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-77191850-4	chr5	77191356	77192356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19349.0	NM_001289767	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	30.5	78.0	55.5	7.5	8.5	5.0
Merged-chr7-90019747-4	chr7	90019248	90020248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9411.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	34.5	125.0	93.0	42.5	88.5	63.5
Merged-chr10-51493767-2	chr10	51493267	51494267	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291894, intron 5 of 8)	intron (NM_001291894, intron 5 of 8)	2869.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113606305-4	chr13	113605809	113606809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	12255.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65800418-5	chr18	65799879	65800879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025468)	promoter-TSS (NM_025468)	-199.0	NM_025468	66286.0	Mm.27800	NM_025468	ENSMUSG00000024516	Sec11c	1810029G24Rik|Sec11l3	SEC11 homolog C, signal peptidase complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-40495825-3	chr8	40495329	40496329	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011135, exon 6 of 7)	exon (NM_011135, exon 6 of 7)	14650.0	NM_001361938	18983.0	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	6.0	3.5	1.0	3.5	5.0	9.5
Merged-chr12-111672342-4	chr12	111671843	111672843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021273)	promoter-TSS (NM_021273)	-5.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55142112-4	chr14	55141626	55142626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-25191.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-12735899-4	chr10	12735415	12736415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 11 of 73)	intron (NM_011682, intron 11 of 73)	125820.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-74841903-4	chr14	74841402	74842402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 2 of 19)	RLTR11A2|LTR|ERVK	105975.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125554609-4	chr7	125554115	125555115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008700, intron 1 of 10)	intron (NM_001008700, intron 1 of 10)	2333.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	119.5	225.0	160.0	36.0	90.0	63.5
Merged-chr3-87859980-4	chr3	87859494	87860494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033573, intron 6 of 6)	intron (NM_033573, intron 6 of 6)	13239.0	NM_021309	27371.0	Mm.86361	NM_021309	ENSMUSG00000028071	Sh2d2a	Lad|Ribp|Tsad	SH2 domain containing 2A	protein-coding	6.0	3.5	5.0	0.5	4.0	1.0
Merged-chr14-31189542-4	chr14	31189017	31190017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347583, intron 7 of 13)	intron (NM_001347583, intron 7 of 13)	17309.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100632947-4	chr5	100632445	100633445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41311.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	3.0	12.0	4.5	0.5	21.5	3.0
Merged-chr7-43346361-7	chr7	43345852	43346852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR35B_MM|LTR|ERVL	-4989.0	NM_001271019	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102442822-4	chr12	102442305	102443305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-2992.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	71.5	117.0	91.0	82.5	247.0	142.5
Merged-chr15-73162140-4	chr15	73161642	73162642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	22805.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3301314-4	chr5	3300811	3301811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42582.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127335418-4	chr2	127334882	127335882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010090)	promoter-TSS (NM_010090)	-777.0	NM_010090	13537.0	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125183763-3	chr5	125183252	125184252	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4538.0	NM_001253904	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139372285-4	chr5	139371774	139372774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	CpG	-2529.0	NR_029768	723898.0		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25519401-4	chr9	25518898	25519898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	37801.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4724537-4	chr7	4724038	4725038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142792, intron 1 of 5)	intron (NM_001142792, intron 1 of 5)	544.0	NM_001142792	330460.0	Mm.361851	NM_177887	ENSMUSG00000046456	Tmem150b	A630041N19|Tmem224	transmembrane protein 150B	protein-coding	3.0	33.0	17.0	7.0	40.0	16.5
Merged-chr12-76943748-4	chr12	76943293	76944293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361663, intron 3 of 4)	intron (NM_001361663, intron 3 of 4)	18455.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65551199-4	chr9	65550706	65551706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28881.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34135493-4	chr17	34134991	34135991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010386, exon 2 of 6)	5' UTR (NM_010386, exon 2 of 6)	-9925.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	4.0	24.5	15.5	2.0	13.0	12.0
Merged-chr9-52048097-4	chr9	52047559	52048559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001104617, exon 1 of 11)	5' UTR (NM_001104617, exon 1 of 11)	118.0	NM_001104617	19684.0	Mm.245746	NM_009041	ENSMUSG00000032050	Rdx	AA516625	radixin	protein-coding	14.5	21.5	16.5	4.5	21.5	21.0
Merged-chr12-82169315-4	chr12	82168823	82169823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167983)	promoter-TSS (NM_001167983)	-693.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86445114-4	chr17	86444622	86445622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 2 of 14)	intron (NM_011104, intron 2 of 14)	-157944.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	8.0	13.5	10.0	10.0	13.5	17.0
Merged-chr7-26243288-4	chr7	26242798	26243798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-23533.0	NM_001167540	100312477.0	Mm.480246	NM_001167540	ENSMUSG00000046130	Vmn1r184	-	vomeronasal 1 receptor, 184	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32694861-4	chr18	32694366	32695366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045381, intron 4 of 4)	intron (NR_045381, intron 4 of 4)	-120517.0	NM_021367	53603.0	Mm.143716	NM_021367	ENSMUSG00000024379	Tslp	-	thymic stromal lymphopoietin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81858764-4	chr15	81858240	81859240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020507)	promoter-TSS (NM_020507)	-414.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	65.0	200.0	143.0	106.5	157.5	136.5
Merged-chr11-48902200-4	chr11	48901705	48902705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024230)	promoter-TSS (NM_001024230)	-53.0	NM_001024230	432555.0	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30322404-4	chr7	30321919	30322919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033140)	promoter-TSS (NM_001033140)	-44.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	154.0	436.0	325.0	305.5	804.0	539.5
Merged-chr7-101361275-4	chr7	101360791	101361791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	13222.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	125.5	235.0	119.5	87.5	234.5	123.5
Merged-chr7-130847399-4	chr7	130846923	130847923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18301.0	NM_133942	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-67950438-4	chr8	67949934	67950934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177698, intron 3 of 14)	intron (NM_177698, intron 3 of 14)	24140.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126487276-4	chr7	126486762	126487762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163713)	promoter-TSS (NM_001163713)	-93.0	NM_172745	233870.0	Mm.197829	NM_172745	ENSMUSG00000073838	Tufm	2300002G02Rik|C76308|C76389|EF-TuMT|EFTU	Tu translation elongation factor, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69332299-4	chr12	69331753	69332753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025441, intron 16 of 32)	PB1D9|SINE|Alu	24923.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	4.5	28.5	26.5	8.0	29.5	24.0
Merged-chr6-129236018-4	chr6	129235492	129236492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040268, intron 2 of 3)	MLTR14|LTR|ERV1	2053.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	27.5	131.5	46.0	33.5	66.5	38.5
Merged-chr11-80177737-2	chr11	80177237	80178237	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 10 of 10)	intron (NM_172133, intron 10 of 10)	-6135.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78069271-4	chr10	78068790	78069790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015790)	promoter-TSS (NM_015790)	-78.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31935425-4	chr16	31934930	31935930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172822, intron 1 of 2)	intron (NM_172822, intron 1 of 2)	1579.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140612307-2	chr5	140611807	140612807	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008494, exon 3 of 8)	exon (NM_008494, exon 3 of 8)	4966.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101223194-4	chr15	101222659	101223659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045328, intron 2 of 2)	MIR|SINE|MIR	962.0	NR_045326	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	0.0	9.0	1.5	0.0	6.5	1.0
Merged-chr16-24640476-4	chr16	24639971	24640971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-81384.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-71048348-4	chr12	71047856	71048856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081195, intron 11 of 23)	intron (NM_001081195, intron 11 of 23)	32389.0	NM_001081195	238247.0	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31767003-4	chr5	31766499	31767499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 3 of 11)	intron (NM_144541, intron 3 of 11)	68949.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-149088717-4	chr3	149088216	149089216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-134081.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.0	3.5	3.0	3.0	2.0	1.5
Merged-chr10-94576096-4	chr10	94575605	94576605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177026)	promoter-TSS (NM_177026)	-158.0	NM_177026	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146616794-3	chr6	146616299	146617299	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026281, intron 6 of 11)	MTE2b|LTR|ERVL-MaLR	17793.0	NM_026281	67623.0	Mm.278037	NM_026281	ENSMUSG00000040234	Tm7sf3	2010003B14Rik|NARP1	transmembrane 7 superfamily member 3	protein-coding	9.5	6.0	8.0	37.0	96.0	84.0
Merged-chr11-69785017-4	chr11	69784513	69785513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029348)	TTS (NM_029348)	10924.0	NM_009601	11443.0	Mm.86425	NM_009601	ENSMUSG00000041189	Chrnb1	Achr-2|Acrb	cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)	protein-coding	0.0	8.5	0.0	0.0	8.5	4.5
Merged-chr14-51083451-4	chr14	51082965	51083965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7612.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	69.5	195.0	147.0	102.5	300.5	219.5
Merged-chr8-94012184-4	chr8	94011703	94012703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011787, intron 1 of 13)	CpG	437.0	NM_011787	23802.0	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-31187376-5	chr8	31186931	31187931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286424)	promoter-TSS (NM_001286424)	100.0	NM_001286425	171167.0	Mm.334477	NM_134161	ENSMUSG00000046152	Fut10	fuc-TX|fut10A	fucosyltransferase 10	protein-coding	11.5	11.5	11.0	8.0	34.5	17.5
Merged-chr17-87107367-4	chr17	87106868	87107868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019654)	promoter-TSS (NM_019654)	-311.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41607813-4	chr13	41607306	41608306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163572, intron 1 of 2)	intron (NM_001163572, intron 1 of 2)	1590.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-42851214-4	chr1	42850731	42851731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023514)	promoter-TSS (NM_023514)	-2.0	NM_023514	69527.0	Mm.252982	NM_023514	ENSMUSG00000060679	Mrps9	2310002A08Rik|AW322516|Mrp-S9|S9mt|mg637	mitochondrial ribosomal protein S9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122702392-4	chr5	122701900	122702900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5144.0	NM_001310720	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148558584-5	chr4	148558098	148559098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355489)	promoter-TSS (NM_001355489)	-115.0	NM_001355489	50912.0	Mm.266635	NM_016699	ENSMUSG00000017264	Exosc10	PM-Scl|PM/Scl-100|Pmscl2|RRP6|p2|p3|p4	exosome component 10	protein-coding	157.5	287.5	278.0	119.0	195.0	163.0
Merged-chr1-91251585-4	chr1	91251096	91252096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355764, intron 1 of 10)	intron (NM_001355764, intron 1 of 10)	1030.0	NM_001355764	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	110.5	314.0	218.0	170.0	325.5	260.5
Merged-chr17-28691267-4	chr17	28690770	28691770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011951)	promoter-TSS (NM_011951)	-72.0	NM_001168508	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168589946-1	chr2	168589446	168590446	+	1000.0	f1_balb.idr	intron (NM_001291169, intron 1 of 10)	intron (NM_001291169, intron 1 of 10)	419.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0.0	1.0	0.0	0.5	1.0	2.0
Merged-chr1-165604383-4	chr1	165603895	165604895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 4 of 5)	intron (NM_001083897, intron 4 of 5)	30146.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130730943-4	chr2	130730472	130731472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029432, intron 27 of 36)	intron (NM_029432, intron 27 of 36)	-33453.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	63.0	110.0	156.0	78.5	197.5	127.5
Merged-chr14-48446302-4	chr14	48445757	48446757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172600)	promoter-TSS (NM_172600)	-95.0	NM_172600	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	31.0	84.5	52.5	41.5	82.0	38.5
Merged-chr8-105636822-4	chr8	105636295	105637295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358924, intron 1 of 11)	CpG	257.0	NM_001358924	13018.0	Mm.269474	NM_181322	ENSMUSG00000005698	Ctcf	AW108038	CCCTC-binding factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132345134-2	chr4	132344634	132345634	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133878, intron 1 of 9)	CpG	616.0	NM_001197082	100088.0	Mm.255045	NM_133878	ENSMUSG00000028896	Rcc1	4931417M11Rik|AI326872|Chc1	regulator of chromosome condensation 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56584853-4	chr17	56584349	56585349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355463)	promoter-TSS (NM_001355463)	-133.0	NM_001163300	224903.0	Mm.255066	NM_001163300	ENSMUSG00000071054	Safb	3110021E02Rik|5330423C17Rik|AU018122|D18386|E130307D12|HAP|HET|SAF-B1|SAFB1	scaffold attachment factor B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-174031870-4	chr1	174031368	174032368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172648)	promoter-TSS (NM_172648)	-113.0	NM_172648	226695.0	Mm.425061	NM_172648	ENSMUSG00000054203	Ifi205	D3|D3cDNA|Ifi205a	interferon activated gene 205	protein-coding	70.5	105.5	75.0	70.5	139.5	92.0
Merged-chr8-125054068-4	chr8	125053558	125054558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174853)	promoter-TSS (NM_174853)	-137.0	NM_174853	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	118.5	261.5	298.5	94.5	188.0	227.0
Merged-chr11-98773923-4	chr11	98773426	98774426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145434, intron 1 of 7)	CpG	1451.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80132185-1	chr12	80131685	80132685	+	1000.0	f0_balb.idr	intron (NR_033514, intron 1 of 2)	intron (NR_033514, intron 1 of 2)	659.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126833669-4	chr8	126833139	126834139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15381.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148857153-4	chr2	148856656	148857656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6222.0	NM_029960	77705.0	Mm.159975	NM_029960	ENSMUSG00000027446	9230104L09Rik	mCST E2	RIKEN cDNA 9230104L09 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70765988-3	chr8	70765470	70766470	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023065, intron 1 of 7)	intron (NM_023065, intron 1 of 7)	693.0	NM_023065	65972.0	Mm.30241	NM_023065		Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	105.5	319.5	222.5	114.5	288.5	187.5
Merged-chr9-61349934-4	chr9	61349426	61350426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	-22440.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-37016313-1	chr15	37015813	37016813	+	1000.0	f1_balb.idr	Intergenic	B1_Mm|SINE|Alu	-8911.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85644661-2	chr12	85644161	85645161	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-42059.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123929082-5	chr9	123928600	123929600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39592.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50415843-4	chr17	50415344	50416344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-93703.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	24.5	56.0	39.5	23.5	55.0	37.5
Merged-chr13-5890145-2	chr13	5889645	5890645	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28656.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-3847194-4	chr16	3846704	3847704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081217)	promoter-TSS (NM_001081217)	-19.0	NM_001081217	385674.0	Mm.244261	NM_001081217	ENSMUSG00000054939	Zfp174	Gm1754	zinc finger protein 174	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63389915-4	chr4	63389427	63390427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 4 of 21)	intron (NM_001045514, intron 4 of 21)	8313.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-14317381-4	chr16	14316881	14317881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025345)	promoter-TSS (NM_025345)	-49.0	NM_025345	66086.0	Mm.42072	NM_025345	ENSMUSG00000022677	Fopnl	0610037P05Rik	Fgfr1op N-terminal like	protein-coding	22.5	92.5	58.0	48.0	92.5	62.5
Merged-chr12-70140742-4	chr12	70140245	70141245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-13426.0	NM_001195033	100504285.0	Mm.291105	NM_001195033	ENSMUSG00000090121	Abhd12b	Gm804	abhydrolase domain containing 12B	protein-coding	3.0	32.5	14.5	11.0	4.5	28.0
Merged-chr13-67451611-4	chr13	67451118	67452118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177712)	promoter-TSS (NM_177712)	6.0	NM_177712	238692.0	Mm.486478	NM_177712	ENSMUSG00000069206	Zfp874a	C330011K17Rik|Rslcan15|Zfp874	zinc finger protein 874a	protein-coding	30.5	55.5	72.0	19.0	52.5	61.5
Merged-chr9-31168902-3	chr9	31168403	31169403	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001102456, exon 6 of 17)	exon (NM_001102456, exon 6 of 17)	-37104.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67174163-4	chr15	67173670	67174670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 1 of 8)	intron (NM_009177, intron 1 of 8)	2712.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	54.0	227.0	131.0	62.0	228.0	139.5
Merged-chr19-37955638-4	chr19	37955117	37956117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 22 of 53)	intron (NM_001302140, intron 22 of 53)	87960.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	54.0	90.5	64.0	38.0	55.0	37.5
Merged-chr9-121313773-4	chr9	121313271	121314271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	RMER17C|LTR|ERVK	16269.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	71.0	196.0	128.5	89.5	204.0	135.5
Merged-chr14-19972616-4	chr14	19972133	19973133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285908, intron 1 of 3)	GA-rich|Low_complexity|Low_complexity	4060.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-15201716-4	chr18	15201230	15202230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50284.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50432397-4	chr16	50431895	50432895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347240)	promoter-TSS (NM_001347240)	-6.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116328815-2	chr7	116328315	116329315	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5375.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-121289556-4	chr2	121289024	121290024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_032393)	promoter-TSS (NM_032393)	-78.0	NM_032393	17754.0	Mm.36501	NM_032393	ENSMUSG00000027254	Map1a	6330416M19Rik|AI853608|Mtap-1|Mtap1|Mtap1a|moth1	microtubule-associated protein 1 A	protein-coding	0.0	1.0	2.0	4.0	0.0	1.5
Merged-chr3-146653792-4	chr3	146653298	146654298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2481.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180273604-4	chr2	180273104	180274104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145851)	promoter-TSS (NM_145851)	-139.0	NM_145851	252966.0	Mm.386884	NM_145851	ENSMUSG00000038990	Cables2	ik3-2	CDK5 and Abl enzyme substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-36049351-4	chr2	36048842	36049842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029309)	promoter-TSS (NM_029309)	-50.0	NM_026703	68375.0	Mm.19834	NM_026703	ENSMUSG00000026895	Ndufa8	0610033L03Rik|AW261656	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60848683-4	chr2	60848175	60849175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	32763.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79018128-4	chr12	79017633	79018633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10856.0	NM_178745	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	37.5	136.0	67.0	85.5	212.0	155.5
Merged-chr3-28027104-4	chr3	28026580	28027580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 3 of 25)	intron (NM_008875, intron 3 of 25)	42909.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21924208-4	chr9	21923715	21924715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045606, intron 3 of 4)	intron (NR_045606, intron 3 of 4)	3073.0	NM_001253869	235043.0	Mm.253329	NM_178577	ENSMUSG00000040883	Tmem205	-	transmembrane protein 205	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-115136968-4	chr13	115136479	115137479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35015.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67440854-4	chr7	67440372	67441372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68014.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	9.5	29.5	15.0	7.5	20.0	11.5
Merged-chr7-43530554-4	chr7	43530051	43531051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111058, intron 3 of 6)	intron (NM_001111058, intron 3 of 6)	2620.0	NM_001111058	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-45975338-4	chr8	45974837	45975837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138668)	promoter-TSS (NM_138668)	-85.0	NM_001033148	69479.0	Mm.158282	NM_001033148	ENSMUSG00000071103	1700029J07Rik	-	RIKEN cDNA 1700029J07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67355373-2	chr17	67354873	67355873	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008984)	promoter-TSS (NM_008984)	-882.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	24.0	62.5	46.0	19.0	52.0	42.5
Merged-chr11-20205253-2	chr11	20204753	20205753	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 1 of 5)	RSINE1|SINE|B4	3841.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	17.0	42.0	39.5	13.0	27.5	27.5
Merged-chr13-23445861-4	chr13	23445372	23446372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-14855.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-70436413-4	chr18	70435898	70436898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36056.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	54.0	172.0	113.5	49.5	90.0	87.5
Merged-chr10-62486064-4	chr10	62485584	62486584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358543, intron 1 of 7)	intron (NM_001358543, intron 1 of 7)	514.0	NM_001113355	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132568711-2	chr4	132568211	132569211	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081211, intron 1 of 1)	B4|SINE|B4	4644.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132114697-4	chr2	132114206	132115206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	30402.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32202826-4	chr16	32202317	32203317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23017.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-72939678-4	chr17	72939181	72940181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029999, exon 3 of 3)	3' UTR (NM_029999, exon 3 of 3)	21376.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-100488471-4	chr3	100487971	100488971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142952, intron 1 of 1)	CpG	721.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-63863861-4	chr17	63863328	63864328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037997)	promoter-TSS (NM_001037997)	-153.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17871855-4	chr17	17871365	17872365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12074.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	181.5	356.0	250.0	85.5	319.5	199.5
Merged-chr5-36563970-4	chr5	36563471	36564471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	18426.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	96.0	136.0	121.5	89.5	182.0	84.0
Merged-chr10-68282632-4	chr10	68282133	68283133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3907.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	128.5	289.0	175.0	130.5	258.0	170.0
Merged-chr2-154656923-4	chr2	154656436	154657436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029362)	promoter-TSS (NM_029362)	-90.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53424338-2	chr19	53423838	53424838	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33704.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31594787-4	chr17	31594286	31595286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027493, intron 6 of 11)	L1MD|LINE|L1	30013.0	NM_016670	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87354339-4	chr16	87353827	87354827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159331, exon 1 of 5)	exon (NM_001159331, exon 1 of 5)	142.0	NM_026366	67768.0	Mm.296532	NM_026366	ENSMUSG00000044442	N6amt1	5830445C04Rik|Hemk2|Pred28	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102430381-4	chr11	102429885	102430885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008175)	promoter-TSS (NM_008175)	63.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91834245-4	chr16	91833770	91834770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 16 of 28)	URR1B|DNA|hAT-Charlie	97360.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-121009339-4	chr4	121008834	121009834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	7913.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21852660-4	chr9	21852143	21853143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177030)	promoter-TSS (NM_177030)	-8.0	NM_177030	319899.0	Mm.128153	NM_177030	ENSMUSG00000032198	Dock6	2410095B20Rik|4931431C02Rik|C330023D02Rik|mKIAA1395	dedicator of cytokinesis 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-59684962-4	chr1	59684475	59685475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018868)	promoter-TSS (NM_018868)	-31.0	NM_018868	55989.0	Mm.220367	NM_018868	ENSMUSG00000026020	Nop58	MSSP|Nol5|SIK|nop5	NOP58 ribonucleoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-25059798-2	chr16	25059298	25060298	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040374, exon 1 of 3)	non-coding (NR_040374, exon 1 of 3)	159.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86046315-4	chr12	86045804	86046804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081423, intron 33 of 33)	L1MB3|LINE|L1	32737.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-35754021-4	chr3	35753530	35754530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029570)	promoter-TSS (NM_029570)	-33.0	NR_151626	76295.0	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13106434-2	chr8	13105934	13106934	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146207, intron 2 of 19)	intron (NM_146207, intron 2 of 19)	713.0	NM_146207	99375.0	Mm.212861	NM_146207	ENSMUSG00000031446	Cul4a	2810470J21Rik|AW495282	cullin 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30664139-2	chr5	30663639	30664639	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2747.0	NM_007681	12615.0	Mm.290563	NM_007681	ENSMUSG00000029177	Cenpa	Cenp-A	centromere protein A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167864444-4	chr2	167863946	167864946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67881.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60927445-4	chr11	60926931	60927931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027800, intron 1 of 1)	intron (NR_027800, intron 1 of 1)	4436.0	NR_027800	24082.0	Mm.46270	NM_025293	ENSMUSG00000042549	Map2k3os	F3-1|Gm16516|Gtlf3a	mitogen-activated protein kinase kinase 3, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90214215-4	chr7	90213705	90214705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51227.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	22.0	42.5	28.5	25.0	22.0	25.0
Merged-chr11-69981262-4	chr11	69980764	69981764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026017)	promoter-TSS (NM_026017)	-29.0	NM_018740	54351.0	Mm.13430	NM_018740	ENSMUSG00000018565	Elp5	Derp6|Rai12	elongator acetyltransferase complex subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9647172-3	chr4	9646674	9647674	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	-3457.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	25.0	45.0	23.0	14.0	23.5	19.5
Merged-chr6-86021113-2	chr6	86020613	86021613	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_012013)	TTS (NM_012013)	3922.0	NM_012013	26910.0	Mm.8024	NM_012013	ENSMUSG00000030001	Figla	FIGalpha|bHLHc8	folliculogenesis specific basic helix-loop-helix	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68691795-4	chr11	68691297	68692297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175260)	promoter-TSS (NM_175260)	-118.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103382081-4	chr11	103381602	103382602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 5 of 11)	intron (NM_183034, intron 5 of 11)	-18410.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-85048441-2	chr2	85047941	85048941	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2019.0	NM_001081260	228140.0	Mm.23606	NM_001081260	ENSMUSG00000033955	Tnks1bp1	Tab182|mKIAA1741	tankyrase 1 binding protein 1	protein-coding	1.0	11.0	8.5	4.0	6.0	0.0
Merged-chr4-150486333-4	chr4	150485872	150486872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 7 of 22)	intron (NM_001085492, intron 7 of 22)	165802.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	6.5	1.0	3.0	0.5	0.0	0.0
Merged-chr11-54522825-4	chr11	54522330	54523330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175258)	promoter-TSS (NM_175258)	-15.0	NM_001252494	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87447030-7	chr17	87446539	87447539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007589)	promoter-TSS (NM_007589)	-104.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	25.0	47.0	18.5	7.5	33.0	29.0
Merged-chr14-57746112-4	chr14	57745579	57746579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015771)	promoter-TSS (NM_015771)	44.0	NM_015771	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39732846-5	chr10	39732350	39733350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038037)	promoter-TSS (NR_038037)	690.0	NM_011264	19714.0	Mm.439723	NM_011264	ENSMUSG00000019841	Rev3l	Rev|Rev3|Sez4	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26835845-4	chr8	26835349	26836349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11426.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22119003-2	chr9	22118503	22119503	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-1808.0	NM_001357312	66126.0	Mm.29801	NM_170777	ENSMUSG00000013822	Elof1	1110011K10Rik	ELF1 homolog, elongation factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75459769-2	chr11	75459269	75460269	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1770.0	NR_030711	100042498.0	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80363739-2	chr18	80363239	80364239	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190373, intron 1 of 3)	CpG	515.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9666087-4	chr3	9665577	9666577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55992.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-37729342-4	chr3	37728863	37729863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5003.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-61225167-2	chr19	61224678	61225678	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009970, exon 11 of 12)	exon (NM_009970, exon 11 of 12)	3240.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0.0	4.5	7.5	0.0	0.5	0.5
Merged-chr4-148160617-1	chr4	148160117	148161117	+	1000.0	f0_c57.idr	promoter-TSS (NM_176848)	promoter-TSS (NM_176848)	-51.0	NM_176848	230904.0	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-140957021-2	chr7	140956521	140957521	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-1060.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121626511-4	chr10	121625995	121626995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081056)	promoter-TSS (NM_001081056)	-163.0	NM_001359618	73192.0	Mm.25042	NM_001081056	ENSMUSG00000034667	Xpot	1110004L07Rik|3110065H13Rik|AI452076|C79645|EXPORTIN-T	exportin, tRNA (nuclear export receptor for tRNAs)	protein-coding	149.5	245.5	191.5	166.0	167.5	139.5
Merged-chr8-25053002-4	chr8	25052491	25053491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 9 of 11)	L1_Rod|LINE|L1	-14029.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	22.5	89.0	75.0	27.0	85.0	71.0
Merged-chr6-85137555-5	chr6	85137058	85138058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011467, exon 1 of 3)	exon (NM_011467, exon 1 of 3)	206.0	NM_011467	20751.0	Mm.28393	NM_011467	ENSMUSG00000033735	Spr	AA409688|Gm10328	sepiapterin reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81190879-2	chr10	81190379	81191379	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190473, intron 5 of 8)	intron (NM_001190473, intron 5 of 8)	-3812.0	NR_015477	69678.0	Mm.81562	NR_015477		Atcayos	2310050B05Rik	ataxia, cerebellar, Cayman type, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27765101-4	chr2	27764619	27765619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54536.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45591001-2	chr7	45590501	45591501	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15825.0	NR_038165	71661.0	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46057172-4	chr19	46056649	46057649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346801, intron 1 of 13)	CpG	610.0	NM_001081214	226169.0	Mm.2415	NM_145504	ENSMUSG00000055491	Pprc1	A930018M19|BC013720|PRC|mKIAA0595	peroxisome proliferative activated receptor, gamma, coactivator-related 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95068074-2	chr8	95067574	95068574	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001042715, exon 8 of 18)	exon (NM_001042715, exon 8 of 18)	12971.0	NM_001042715	330830.0	Mm.277112	NM_001042715	ENSMUSG00000031786	Drc7	Ccdc135|Gm770|SRG-L|SRG-S	dynein regulatory complex subunit 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84240356-4	chr1	84239849	84240849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003948, intron 1 of 2)	intron (NM_001003948, intron 1 of 2)	-21388.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47889026-4	chr6	47888531	47889531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146175, intron 2 of 7)	intron (NM_146175, intron 2 of 7)	11476.0	NM_146175	101095.0	Mm.440186	NM_146175	ENSMUSG00000025821	Zfp282	AI449432|C81429|E430019K09Rik|HUB1	zinc finger protein 282	protein-coding	1.0	12.5	3.0	5.5	5.5	2.0
Merged-chr5-121389122-4	chr5	121388613	121389613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3498.0	NM_172275	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	93.0	241.5	125.0	98.0	205.0	122.5
Merged-chr16-31663970-7	chr16	31663486	31664486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252434)	promoter-TSS (NM_001252434)	51.0	NM_001252434	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84956533-4	chr2	84956052	84957052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021398, intron 12 of 12)	intron (NM_021398, intron 12 of 12)	19906.0	NM_021398	58207.0	Mm.290729	NM_021398	ENSMUSG00000027074	Slc43a3	Eeg1|SEEEG-1	solute carrier family 43, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12321438-4	chr15	12320928	12321928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025673)	promoter-TSS (NM_025673)	-68.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155019908-2	chr2	155019408	155020408	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015770, intron 1 of 3)	ERVB4_1-I_MM-int|LTR|ERVK	6338.0	NM_015770	50518.0	Mm.315593	NM_015770	ENSMUSG00000027596	a	A<y>|ASIP|ASP|As	nonagouti	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16207700-4	chr7	16207214	16208214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027883, intron 7 of 16)	intron (NM_027883, intron 7 of 16)	14279.0	NM_001285931	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	240.0	442.0	289.5	16.0	23.0	28.0
Merged-chr16-36639984-4	chr16	36639500	36640500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	26077.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129855318-7	chr4	129854811	129855811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34603.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	30.0	112.5	83.0	45.5	104.0	69.5
Merged-chr9-107724945-4	chr9	107724428	107725428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14453.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87509327-4	chr3	87508833	87509833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16245.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	14.5	23.5	4.5	13.5	16.0	8.0
Merged-chr17-88458269-4	chr17	88457772	88458772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355742, intron 1 of 5)	intron (NM_001355742, intron 1 of 5)	17568.0	NM_001355742	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	16.0	15.0	5.5	6.0	8.0	2.5
Merged-chr1-165697723-4	chr1	165697238	165698238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	10356.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115654232-4	chr11	115653743	115654743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 3 of 5)	RSINE1|SINE|B4	-25948.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165055621-4	chr2	165055126	165056126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170704)	promoter-TSS (NM_170704)	-10.0	NM_170704	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21092069-4	chr9	21091565	21092565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027911)	promoter-TSS (NM_027911)	-57.0	NR_038081	100568458.0	Mm.196137	NR_038081		Gm38431	Raver1-fdx1l	predicted gene, 38431	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105881483-2	chr1	105880983	105881983	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100760.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-63020841-4	chr11	63020349	63021349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16715.0	NR_126547	74884.0	Mm.363520	NR_126547	ENSMUSG00000087604	Cdrt4os1	4930452L02Rik	CMT1A duplicated region transcript 4, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21166260-4	chr9	21165761	21166761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183408, intron 1 of 14)	CpG	547.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69760235-2	chr11	69759735	69760735	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_019871, exon 2 of 2)	exon (NM_019871, exon 2 of 2)	-1602.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50753821-4	chr16	50753298	50754298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21025.0	NR_028300	68190.0	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-164054972-2	chr1	164054472	164055472	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011345, intron 11 of 13)	intron (NM_011345, intron 11 of 13)	6738.0	NM_011345	20339.0	Mm.5245	NM_011345	ENSMUSG00000026582	Sele	CD62E|E-selectin|ELAM-1|Elam|LECAM2	selectin, endothelial cell	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35897406-4	chr17	35896915	35897915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033630)	promoter-TSS (NM_001033630)	-37.0	NM_001033630	69662.0	Mm.260159	NM_001033630	ENSMUSG00000050705	2310061I04Rik	-	RIKEN cDNA 2310061I04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55649564-4	chr19	55649059	55650059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	52645.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28350684-4	chr7	28350193	28351193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013647)	promoter-TSS (NM_013647)	4.0	NM_013647	20055.0	Mm.702	NM_013647	ENSMUSG00000037563	Rps16	AA420385|AI317031	ribosomal protein S16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144720303-4	chr3	144719836	144720836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282042)	promoter-TSS (NM_001282042)	-1.0	NM_001282037	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35210809-2	chr17	35210309	35211309	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5458.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120613397-4	chr5	120612869	120613869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029096)	promoter-TSS (NM_029096)	239.0	NM_028041	71990.0	Mm.24495	NM_028041	ENSMUSG00000029599	Ddx54	2410015A15Rik|AI414901|DP97	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-151842141-5	chr4	151841607	151842607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 1 of 23)	intron (NM_001081557, intron 1 of 23)	19661.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-36217179-4	chr2	36216667	36217667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13259.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50807801-4	chr14	50807327	50808327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002142)	promoter-TSS (NR_002142)	-56.0	NR_002142	85029.0		NR_002142	ENSMUSG00000092837	Rpph1	Gm24821|H1RNA|Rmrp5|Rpr	ribonuclease P RNA component H1	ncRNA	182.0	344.0	277.5	164.0	332.0	220.5
Merged-chr19-60874541-4	chr19	60874042	60875042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007452)	promoter-TSS (NM_007452)	-4.0	NM_007452	11757.0	Mm.29821	NM_007452	ENSMUSG00000024997	Prdx3	AW822249|Aop1|D0Tohi1|Ef2l|Mer5|Prx3|SP22|TDXM	peroxiredoxin 3	protein-coding	6.0	38.0	27.5	5.5	33.0	25.0
Merged-chr7-34302097-4	chr7	34301549	34302549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16440.0	NM_172741	233103.0	Mm.491097	NM_172741	ENSMUSG00000066571	4931406P16Rik	AA553327|mKIAA0355	RIKEN cDNA 4931406P16 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-138522543-2	chr3	138522043	138523043	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-3648.0	NM_007917	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165922557-4	chr2	165922020	165923020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37682.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	45.5	208.5	113.0	65.0	172.5	125.0
Merged-chr2-98666498-7	chr2	98665974	98666974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	SYNREP_MM|Satellite|Satellite	1198817.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31274820-1	chr16	31274320	31275320	+	1000.0	f0_balb.idr	intron (NM_025800, intron 1 of 5)	CpG	457.0	NM_025800	66849.0	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|I-2|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89422165-4	chr6	89421679	89422679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 4 of 6)	intron (NM_001167736, intron 4 of 6)	-59566.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143527668-4	chr5	143527188	143528188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347530, intron 1 of 6)	CpG	305.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94591804-4	chr10	94591329	94592329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172051)	TTS (NM_172051)	-5630.0	NR_106070	102466817.0		NR_106070	ENSMUSG00000098544	Mir7211	Gm27536|mmu-mir-7211	microRNA 7211	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158361528-4	chr2	158361014	158362014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027887)	promoter-TSS (NR_027887)	-5.0	NR_015463	68108.0	Mm.119198	NR_015463		Snhg17	9430008C03Rik	small nucleolar RNA host gene 17	ncRNA	4.5	0.0	0.5	10.5	0.0	3.0
Merged-chr14-8132966-4	chr14	8132442	8133442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 4 of 19)	intron (NM_001360314, intron 4 of 19)	34731.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184471543-4	chr1	184471040	184472040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86151.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150557046-4	chr4	150556540	150557540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	95134.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-33515497-4	chr6	33515004	33516004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 9 of 17)	intron (NM_009148, intron 9 of 17)	266376.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38536542-4	chr2	38536044	38537044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159631, intron 1 of 9)	intron (NM_001159631, intron 1 of 9)	24668.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-69439905-4	chr9	69439402	69440402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13781.0	NM_007585	12306.0	Mm.238343	NM_007585	ENSMUSG00000032231	Anxa2	AW215814|Cal1h	annexin A2	protein-coding	0.0	5.0	0.0	0.0	0.0	5.0
Merged-chr18-56431424-2	chr18	56430924	56431924	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026240)	promoter-TSS (NM_026240)	-708.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151684261-2	chr1	151683761	151684761	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 5 of 13)	intron (NM_022018, intron 5 of 13)	70466.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97824126-4	chr3	97823596	97824596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 4 of 46)	intron (NM_001039376, intron 4 of 46)	-56082.0	NR_110360	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21265213-4	chr9	21264738	21265738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153583)	promoter-TSS (NM_153583)	-47.0	NM_153583	235040.0	Mm.440165	NM_153583	ENSMUSG00000002820	Atg4d	9830134P12Rik|APG4-D|Apg4d|Atg4dl|Autl4	autophagy related 4D, cysteine peptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-43221432-4	chr10	43220928	43221928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168289)	promoter-TSS (NM_001168289)	-58.0	NM_027772	71365.0	Mm.490430	NM_027772	ENSMUSG00000038240	Pdss2	5430420P03Rik|Gm60|Plmp|kd|mDLP1	prenyl (solanesyl) diphosphate synthase, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63377850-4	chr9	63377344	63378344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011840)	promoter-TSS (NM_011840)	8.0	NM_011840	23938.0	Mm.325746	NM_011840	ENSMUSG00000058444	Map2k5	AI324775|AI428457|MEK5|Mapkk5|Prkmk5	mitogen-activated protein kinase kinase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59731781-2	chr9	59731277	59732277	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18872.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103462753-4	chr15	103462233	103463233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153505, exon 7 of 31)	exon (NM_153505, exon 7 of 31)	8908.0	NM_153505	105855.0	Mm.30805	NM_153505	ENSMUSG00000022488	Nckap1l	4930568P13Rik|AI463083|Hem1|Hemp1	NCK associated protein 1 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47225506-4	chr17	47225001	47226001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 3 of 19)	AT_rich|Low_complexity|Low_complexity	-4729.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93235779-4	chr1	93235290	93236290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172463)	promoter-TSS (NM_172463)	-107.0	NM_172463	208777.0	Mm.271897	NM_172463	ENSMUSG00000047793	Sned1	6720455I24Rik|AI197264|AI642697|D430044C15Rik|SST3|Snep	sushi, nidogen and EGF-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36574772-4	chr5	36574271	36575271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113362, intron 2 of 14)	intron (NM_001113362, intron 2 of 14)	7626.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	19.5	24.0	20.0	10.5	18.5	19.0
Merged-chr7-19297321-2	chr7	19296821	19297821	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6252.0	NM_001025364	20167.0	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93144226-4	chr16	93143706	93144706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	208983.0	NR_040486	69857.0	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88440593-4	chr17	88440114	88441114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355743)	promoter-TSS (NM_001355743)	-90.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129546972-4	chr2	129546455	129547455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-10353.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	42.5	116.0	96.5	87.5	134.0	117.0
Merged-chr13-45442613-4	chr13	45442113	45443113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52871.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	1.5	6.5	11.0	1.5	7.0	11.0
Merged-chr1-82724945-4	chr1	82724463	82725463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310699)	promoter-TSS (NM_001310699)	73.0	NM_001310695	75734.0	Mm.396863	NM_029409	ENSMUSG00000026150	Mff	5230400G24Rik|AI314724	mitochondrial fission factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98438977-4	chr11	98438456	98439456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025559)	promoter-TSS (NM_025559)	32.0	NM_025559	103742.0	Mm.259614	NM_025559	ENSMUSG00000002580	Mien1	1810046J19Rik|AI463380|Rdx12	migration and invasion enhancer 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122372474-4	chr5	122371970	122372970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026883)	promoter-TSS (NM_026883)	-38.0	NM_024216	68080.0	Mm.266328	NM_024216	ENSMUSG00000029464	Gpn3	A930018B01Rik|Atpbd1c|D5Ertd708e	GPN-loop GTPase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-24684033-2	chr1	24683533	24684533	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310483, intron 1 of 15)	intron (NM_001310483, intron 1 of 15)	5115.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122851067-2	chr5	122850577	122851577	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030564, intron 1 of 5)	intron (NM_030564, intron 1 of 5)	889.0	NM_030564	80751.0	Mm.388529	NM_030564	ENSMUSG00000029474	Rnf34	AW061037|AW536122|BC004042|C88279|RIFF	ring finger protein 34	protein-coding	0.0	0.0	3.0	1.5	0.5	2.5
Merged-chr7-31149970-4	chr7	31149471	31150471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153431, intron 1 of 18)	intron (NR_153431, intron 1 of 18)	1200.0	NM_027898	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	18.5	22.5	17.5	21.5	18.5	33.5
Merged-chr9-20952856-5	chr9	20952312	20953312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199433)	promoter-TSS (NM_001199433)	167.0	NM_010066	13433.0	Mm.128580	NM_010066	ENSMUSG00000004099	Dnmt1	Cxxc9|Dnmt|Dnmt1o|MCMT|MTase|Met-1|Met1|MommeD2|m.MmuI	DNA methyltransferase (cytosine-5) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106193696-4	chr11	106193179	106194179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028126)	promoter-TSS (NM_028126)	-76.0	NM_001252449	72149.0	Mm.403722	NM_028126	ENSMUSG00000069631	Strada	2610019A05Rik|6030402H20Rik|AI480680|E130112C09Rik	STE20-related kinase adaptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69404100-2	chr11	69403600	69404600	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001017426, exon 11 of 23)	exon (NM_001017426, exon 11 of 23)	-5866.0	NM_025915	67020.0	Mm.390406	NM_025915	ENSMUSG00000045377	Tmem88	2600017H02Rik	transmembrane protein 88	protein-coding	0.0	0.0	0.0	0.0	1.5	1.5
Merged-chr12-112840863-4	chr12	112840362	112841362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A2|LTR|ERVK	-11341.0	NM_001359234	71963.0	Mm.313185	NM_028023	ENSMUSG00000047832	Cdca4	2410018C03Rik|HEPP|SEI-3	cell division cycle associated 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-45955225-4	chr11	45954732	45955732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290737)	promoter-TSS (NM_001290737)	-44.0	NM_001290737	66628.0	Mm.269083	NM_001080969	ENSMUSG00000011254	Thg1l	-	tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)	protein-coding	9.5	22.5	18.5	8.5	32.5	19.0
Merged-chr17-73009044-4	chr17	73008561	73009561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90756.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	2.5	10.5	8.0	3.0	5.0	14.0
Merged-chr7-123170547-7	chr7	123170030	123171030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144925, exon 6 of 24)	exon (NM_144925, exon 6 of 24)	-44336.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-127780287-2	chr8	127779787	127780787	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	480635.0	NM_001013580	93742.0	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11253532-4	chr16	11253043	11254043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_035466)	TTS (NR_035466)	782.0	NM_001130008	14852.0	Mm.325827	NM_146066	ENSMUSG00000062203	Gspt1	AI314175|AI326449|AV307676|C79774|G1st|Gst-1	G1 to S phase transition 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73618422-4	chr7	73617909	73618909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-60014.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46111031-4	chr17	46110521	46111521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026768)	promoter-TSS (NM_026768)	17.0	NM_026768	68565.0	Mm.287443	NM_026768	ENSMUSG00000023967	Mrps18a	1110004O20Rik|C79712	mitochondrial ribosomal protein S18A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107644788-4	chr9	107644278	107645278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9436.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	10.0	16.0	11.5	4.0	15.0	11.0
Merged-chr16-32332197-4	chr16	32331675	32332675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177633)	promoter-TSS (NM_177633)	-77.0	NM_177633	224111.0	Mm.31275	NM_177633	ENSMUSG00000053774	Ubxn7	A630090P18|AI196514|Ubxd7|mKIAA0794	UBX domain protein 7	protein-coding	0.0	0.0	2.5	24.0	56.0	49.0
Merged-chr13-75794368-4	chr13	75793859	75794859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45526.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	27.5	62.5	54.5	31.5	46.0	37.0
Merged-chr13-5511968-4	chr13	5511487	5512487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	346105.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95951676-2	chr3	95951176	95952176	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22419.0	NM_023210	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	149.0	314.5	278.0	146.5	380.0	304.0
Merged-chr17-57300210-2	chr17	57299712	57300712	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 9 of 25)	B2_Mm1a|SINE|B2	21112.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107464344-2	chr11	107463844	107464844	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	6376.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-33247777-4	chr4	33247252	33248252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033225, intron 1 of 1)	CpG	1035.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122208540-4	chr7	122208062	122209062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10934.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24454113-2	chr5	24453613	24454613	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359881, intron 1 of 15)	intron (NM_001359881, intron 1 of 15)	1936.0	NM_139153	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-32395587-4	chr6	32395079	32396079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-115562.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	8.5	29.5	27.5	4.5	24.5	15.5
Merged-chr1-135313793-4	chr1	135313292	135314292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360858)	promoter-TSS (NM_001360858)	-55.0	NM_001360858	21854.0	Mm.2368	NM_011590	ENSMUSG00000062580	Timm17a	Tim17a|mTim17a	translocase of inner mitochondrial membrane 17a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59575726-4	chr4	59575223	59576223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-5840.0	NM_001301367	72479.0	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57998558-2	chr9	57998058	57999058	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346787, intron 1 of 9)	intron (NM_001346787, intron 1 of 9)	534.0	NM_001346787	13070.0	Mm.302865	NM_019779	ENSMUSG00000032323	Cyp11a1	Cyp11a|Cypxia1|D9Ertd411e|P450scc|Scc|cscc	cytochrome P450, family 11, subfamily a, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111997210-4	chr10	111996720	111997720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028608)	promoter-TSS (NM_028608)	44.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34373211-4	chr2	34372672	34373672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1127.0	NM_016768	18516.0	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-94500330-4	chr6	94499816	94500816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026255)	promoter-TSS (NM_026255)	2.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125411234-4	chr6	125410725	125411725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30721.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84976584-4	chr8	84976105	84977105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008416)	TTS (NM_008416)	2143.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	154.5	497.0	331.0	140.5	592.5	317.5
Merged-chr11-101095816-2	chr11	101095316	101096316	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008949)	promoter-TSS (NM_008949)	-381.0	NM_008949	19183.0	Mm.18344	NM_008949	ENSMUSG00000019303	Psmc3ip	C79099|GT198|HOP2|Tbpip	proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50117461-1	chr17	50116961	50117961	+	1000.0	f1_balb.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	73036.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	4.0	13.0	0.5	5.5	0.0	1.0
Merged-chr11-63922417-4	chr11	63921922	63922922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018805)	promoter-TSS (NM_018805)	-138.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	4.0	6.5	6.5	2.0	6.5	1.5
Merged-chr4-133159316-4	chr4	133158810	133159810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	28677.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	184.5	337.5	209.5	97.0	237.0	168.0
Merged-chr19-4097646-3	chr19	4097153	4098153	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026373, intron 1 of 3)	intron (NM_026373, intron 1 of 3)	302.0	NM_026373	52004.0	Mm.29609	NM_026373	ENSMUSG00000024856	Cdk2ap2	5830466O21Rik|D19Ertd144e|Doc-1r	CDK2-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30422251-4	chr7	30421744	30422744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360907)	promoter-TSS (NM_001360907)	-162.0	NM_001360907	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	287.5	614.5	443.0	381.5	561.5	476.0
Merged-chr10-99425472-4	chr10	99424974	99425974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	162243.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60911960-4	chr18	60911459	60912459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001038499)	promoter-TSS (NM_001038499)	-281.0	NM_001038499	545260.0	Mm.20147	NM_001038499	ENSMUSG00000036412	Arsi	BC020108	arylsulfatase i	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133369665-4	chr4	133369147	133370147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358455)	promoter-TSS (NM_001358455)	-88.0	NM_016981	20544.0	Mm.4312	NM_016981	ENSMUSG00000028854	Slc9a1	AW554487|Apnh|Mir5122|Nhe1|mir-5122|swe	solute carrier family 9 (sodium/hydrogen exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117888293-4	chr5	117887798	117888798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 2 of 27)	intron (NM_008712, intron 2 of 27)	21459.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87756681-4	chr11	87756177	87757177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029555)	promoter-TSS (NR_029555)	-187.0	NR_029555	387160.0		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	146.0	492.5	306.5	155.5	454.0	327.0
Merged-chr9-59544923-4	chr9	59544416	59545416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	5376.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114674156-2	chr11	114673656	114674656	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1312.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6322727-4	chr2	6322234	6323234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080548)	promoter-TSS (NM_001080548)	-23.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106685855-4	chr9	106685331	106686331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011573)	promoter-TSS (NM_011573)	-15.0	NM_011573	21767.0	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	39.5	88.0	100.5	19.0	91.5	87.5
Merged-chr9-45910538-2	chr9	45910038	45911038	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_104055, intron 4 of 17)	intron (NR_104055, intron 4 of 17)	-3627.0	NM_001361112	235315.0	Mm.220945	NM_178709	ENSMUSG00000042790	Rnf214	D130054N24Rik	ring finger protein 214	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25262520-4	chr2	25262020	25263020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175286)	promoter-TSS (NM_175286)	-78.0	NM_175286	97031.0	Mm.308539	NM_175286	ENSMUSG00000048707	Tprn	C430004E15Rik|C87750	taperin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60733546-4	chr18	60733060	60734060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348102)	promoter-TSS (NM_001348102)	-419.0	NM_001348102	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	17.5	46.5	33.5	7.0	84.0	58.0
Merged-chr17-94864822-4	chr17	94864313	94865313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024731)	promoter-TSS (NM_001024731)	-105.0	NM_001024731	100044193.0		NM_001024731	ENSMUSG00000095193	Gm20939	-	predicted gene, 20939	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-92336561-2	chr13	92336016	92337016	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311120, intron 8 of 23)	intron (NM_001311120, intron 8 of 23)	-18267.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	2.0	16.0	2.5	10.0	36.0	10.0
Merged-chr3-36475138-4	chr3	36474626	36475626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028183)	promoter-TSS (NM_028183)	398.0	NR_105976	102466786.0		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6858242-4	chr19	6857753	6858753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081291)	promoter-TSS (NM_001081291)	-42.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-57887290-4	chr14	57886760	57887760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029492, intron 1 of 12)	intron (NM_029492, intron 1 of 12)	3076.0	NM_029492	75965.0	Mm.29044	NM_029492	ENSMUSG00000021969	Zdhhc20	4930542A17Rik|5033406L14Rik|AI448102|B230110O18Rik|HK11	zinc finger, DHHC domain containing 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86132696-2	chr15	86132196	86133196	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172611, intron 15 of 18)	intron (NM_172611, intron 15 of 18)	-53032.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	3.5	0.0	0.0	0.0	0.5	0.0
Merged-chr15-59511695-3	chr15	59511192	59512192	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	L2a|LINE|L2	-136962.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	1.5	9.0	12.0	2.5	1.0	1.5
Merged-chr12-79352340-4	chr12	79351846	79352846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	54995.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	1.5	2.0	2.0	1.0	2.0	5.0
Merged-chr15-101053199-2	chr15	101052699	101053699	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001214911, exon 1 of 1)	exon (NM_001214911, exon 1 of 1)	1200.0	NM_001214911	668225.0	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-85937039-4	chr6	85936520	85937520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	21049.0	NM_001362065	69786.0	Mm.218434	NM_176842	ENSMUSG00000054226	Tprkb	0610033G21Rik|1810034M08Rik|Cgi-121|DRWMS1|mDRWMS1	Tp53rk binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122570839-4	chr10	122570328	122571328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040616)	promoter-TSS (NR_040616)	-937.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	25.0	38.5	44.5	10.0	44.5	50.5
Merged-chr16-31938965-4	chr16	31938439	31939439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172822, intron 1 of 2)	MTE2b|LTR|ERVL-MaLR	5088.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60688446-2	chr18	60687946	60688946	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001348101, exon 15 of 15)	3' UTR (NM_001348101, exon 15 of 15)	25036.0	NR_045401	328963.0	Mm.417203	NR_045401		G630071F17Rik	G630071F17	RIKEN cDNA G630071F17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102441643-2	chr12	102441143	102442143	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1830.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	2.5	8.5	14.0	4.0	3.0	2.5
Merged-chr2-52675038-2	chr2	52674538	52675538	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	821.0	NM_001285428	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-102860195-4	chr9	102859693	102860693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284258, intron 1 of 13)	intron (NM_001284258, intron 1 of 13)	25273.0	NM_001284258	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	0.0	1.5	0.5	1.5	3.5	3.0
Merged-chr8-125067613-9	chr8	125067188	125068188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 1 of 12)	intron (NM_174854, intron 1 of 12)	13493.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	299.5	603.5	424.5	266.5	414.0	388.0
Merged-chr15-103323577-4	chr15	103323076	103324076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356627, intron 2 of 7)	CpG	10762.0	NM_001356627	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117781719-4	chr11	117781214	117782214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195088)	promoter-TSS (NM_001195088)	-583.0	NM_001195090	217356.0	Mm.116675	NM_181856	ENSMUSG00000050106	Tmc8	EVIN2|Ever2|mFLJ00400	transmembrane channel-like gene family 8	protein-coding	0.0	0.5	2.5	70.5	138.5	133.0
Merged-chr7-126437082-2	chr7	126436582	126437582	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030566, intron 3 of 12)	intron (NM_030566, intron 3 of 12)	8315.0	NM_030566	70314.0	Mm.35467	NM_030566	ENSMUSG00000030727	Rabep2	2610011A08Rik|AI462746|Fra	rabaptin, RAB GTPase binding effector protein 2	protein-coding	0.0	0.0	2.5	1.5	2.5	2.0
Merged-chr15-7129481-4	chr15	7128998	7129998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113386)	promoter-TSS (NM_001113386)	-74.0	NM_001113386	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40883429-4	chr10	40882941	40883941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031877)	promoter-TSS (NM_031877)	-93.0	NM_031877	83767.0	Mm.41353	NM_031877	ENSMUSG00000019831	Wasf1	AI195380|AI838537|Scar|WAVE|WAVE-1	WAS protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46857706-4	chr17	46857173	46858173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20A4|LTR|ERVK	-26260.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-91716905-4	chr7	91716413	91717413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011807, intron 2 of 22)	intron (NM_011807, intron 2 of 22)	-345481.0	NM_001243046	23859.0	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs large MAGUK scaffold protein 2	protein-coding	0.0	2.5	0.0	0.0	2.5	1.0
Merged-chr4-99929427-4	chr4	99928919	99929919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028132)	promoter-TSS (NM_028132)	-32.0	NM_028132	72157.0	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46142035-2	chr8	46141535	46142535	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-17889.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43443509-4	chr7	43443003	43444003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026695)	promoter-TSS (NM_026695)	-569.0	NM_026695	110826.0	Mm.30200	NM_026695	ENSMUSG00000004610	Etfb	0610009I16Rik|2810441H06Rik	electron transferring flavoprotein, beta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125350208-3	chr6	125349667	125350667	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011609, intron 1 of 9)	intron (NM_011609, intron 1 of 9)	444.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	54.0	66.0	72.5	24.5	49.5	73.0
Merged-chr3-100993865-4	chr3	100993356	100994356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001167906, exon 9 of 9)	exon (NM_001167906, exon 9 of 9)	-24193.0	NM_001013026	74044.0	Mm.270961	NM_001013026	ENSMUSG00000033222	Ttf2	4632434F22Rik|8030447N19|AV218430	transcription termination factor, RNA polymerase II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-96477425-4	chr7	96476944	96477944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 3 of 32)	intron (NM_011858, intron 3 of 32)	-135480.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	20.5	34.5	23.0	19.0	43.5	33.5
Merged-chr18-5740605-4	chr18	5740062	5741062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360982, intron 2 of 7)	L1MD2|LINE|L1	147915.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	4.0	6.5	2.0	5.5	11.0	2.5
Merged-chr6-91711805-2	chr6	91711305	91712305	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	27738.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135781774-2	chr5	135781274	135782274	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008617, intron 1 of 8)	intron (NM_008617, intron 1 of 8)	3125.0	NM_008617	17448.0	Mm.297096	NM_008617	ENSMUSG00000019179	Mdh2	MDH|Mdh-2|Mor-1|Mor1	malate dehydrogenase 2, NAD (mitochondrial)	protein-coding	2.5	10.0	1.5	0.5	4.5	1.5
Merged-chr6-70824659-4	chr6	70824161	70825161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19854.0	NM_010121	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-48042895-4	chr4	48042416	48043416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2389.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191248666-4	chr1	191248148	191249148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24194.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	47.5	107.0	58.0	49.0	61.0	58.5
Merged-chr18-83870965-4	chr18	83870444	83871444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	215618.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140607249-4	chr5	140606764	140607764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008494)	promoter-TSS (NM_008494)	-77.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-158061131-4	chr3	158060614	158061614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359763, intron 10 of 13)	intron (NM_001359763, intron 10 of 13)	24432.0	NM_001289524	67144.0	Mm.358704	NM_024194	ENSMUSG00000063052	Lrrc40	2610040E16Rik|AI837674	leucine rich repeat containing 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-19601778-4	chr8	19601257	19602257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106660.0	NM_139220	246080.0	Mm.207067	NM_139220	ENSMUSG00000037790	Defb7	BD-7|Defb15	defensin beta 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128302552-2	chr10	128302052	128303052	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252327)	promoter-TSS (NM_001252327)	-783.0	NM_133992	103135.0	Mm.244183	NM_133992	ENSMUSG00000005682	Pan2	1200014O24Rik|AI047843|AW742773|Usp52|mKIAA0710	PAN2 poly(A) specific ribonuclease subunit	protein-coding	219.0	437.5	314.0	192.0	448.0	323.5
Merged-chr8-70700073-4	chr8	70699584	70700584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010592, exon 1 of 1)	3' UTR (NM_010592, exon 1 of 1)	2345.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91298290-4	chr1	91297810	91298810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016717)	promoter-TSS (NM_016717)	-28.0	NM_016717	50880.0	Mm.25724	NM_016717	ENSMUSG00000026307	Scly	9830169H08|A930015N15Rik|SCL|Scly1|Scly2	selenocysteine lyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35971671-3	chr8	35971172	35972172	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-88715.0	NR_046181	330737.0	Mm.381743	NR_046181	ENSMUSG00000109761	5430403N17Rik	5430403N17	RIKEN cDNA 5430403N17 gene	ncRNA	6.0	0.0	3.5	48.0	92.5	49.5
Merged-chr6-134262233-4	chr6	134261747	134262747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 7 of 8)	intron (NM_001303102, intron 7 of 8)	-134082.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	36.5	81.5	55.5	89.0	168.0	75.5
Merged-chr12-116435459-4	chr12	116434980	116435980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133762, intron 17 of 28)	Lx8|LINE|L1	30078.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	59.5	92.5	122.0	18.0	26.0	42.0
Merged-chr9-57521139-4	chr9	57520601	57521601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007747)	promoter-TSS (NM_007747)	-131.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137600758-4	chr5	137600251	137601251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001254762)	promoter-TSS (NM_001254762)	-43.0	NM_001254762	68929.0	Mm.41355	NM_030037	ENSMUSG00000037221	Mospd3	1190005J19Rik|5133401H10Rik|Gtig2|R124	motile sperm domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5850369-4	chr19	5849858	5850858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026169)	TTS (NM_026169)	-4878.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62932625-2	chr9	62932125	62933125	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 2 of 13)	intron (NM_019663, intron 2 of 13)	48254.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-68196091-4	chr18	68195603	68196603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-31843.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-151572238-2	chr2	151571738	151572738	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145535)	promoter-TSS (NM_145535)	-385.0	NM_145535	228765.0	Mm.32068	NM_145535	ENSMUSG00000027456	Sdcbp2	-	syndecan binding protein (syntenin) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95530011-4	chr3	95529505	95530505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021281, intron 2 of 7)	intron (NM_021281, intron 2 of 7)	3219.0	NM_001267695	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	18.5	71.0	36.0	28.5	36.0	26.0
Merged-chr10-127599619-4	chr10	127599103	127600103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	21545.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-35950017-4	chr13	35949510	35950510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie1a|DNA|hAT-Charlie	-17896.0	NM_029628	76487.0	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	6.5	0.0	14.5	11.0	19.0	17.0
Merged-chr15-91192055-4	chr15	91191549	91192549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358967)	promoter-TSS (NM_001358967)	-42.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10949305-4	chr19	10948802	10949802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023731)	promoter-TSS (NM_023731)	-36.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52041547-4	chr13	52041040	52042040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55201.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-52061334-4	chr16	52060830	52061830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	29781.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62047799-2	chr18	62047299	62048299	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94724.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102136289-4	chr15	102135780	102136780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033277)	promoter-TSS (NM_001033277)	-65.0	NM_001033277	223918.0	Mm.385009	NM_001033277	ENSMUSG00000036966	Spryd3	BC008150	SPRY domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-45644661-3	chr16	45644167	45645167	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145389, intron 2 of 5)	intron (NM_145389, intron 2 of 5)	9451.0	NM_145389	212998.0	Mm.97511	NM_145389	ENSMUSG00000033187	BC016579	-	cDNA sequence, BC016579	protein-coding	28.0	76.5	58.5	11.5	11.5	9.5
Merged-chr4-126537008-4	chr4	126536495	126537495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3537.0	NM_153177	76850.0	Mm.86705	NM_153177	ENSMUSG00000042500	Ago4	5730550L01Rik|AI481660|Eif2c4	argonaute RISC catalytic subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86417142-4	chr1	86416652	86417652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-9177.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8924908-4	chr3	8924409	8925409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1052.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-78868304-4	chr12	78867792	78868792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026114, intron 2 of 7)	RLTR35B_MM|LTR|ERVL	6220.0	NM_026114	13665.0	Mm.196220	NM_026114	ENSMUSG00000021116	Eif2s1	0910001O23Rik|2410026C18Rik|35kDa|Eif2a|eIF2alpha	eukaryotic translation initiation factor 2, subunit 1 alpha	protein-coding	11.5	7.0	11.0	9.0	7.5	19.5
Merged-chr6-122856152-4	chr6	122855651	122856651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009779)	promoter-TSS (NM_009779)	6.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46648123-4	chr19	46647635	46648635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177813, intron 2 of 3)	intron (NM_001177813, intron 2 of 3)	24734.0	NM_001177813	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	41.0	78.5	37.0	72.5	90.0	83.0
Merged-chr15-79330026-2	chr15	79329526	79330526	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1655.0	NM_001199023	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50229375-4	chr11	50228867	50229867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145926, intron 1 of 14)	intron (NM_145926, intron 1 of 14)	-2878.0	NR_105884	102466765.0		NR_105884	ENSMUSG00000098474	Mir6919	Gm27889|mmu-mir-6919	microRNA 6919	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72148751-2	chr6	72148251	72149251	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 5 of 6)	intron (NM_001035228, intron 5 of 6)	-25554.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29809529-4	chr11	29809040	29810040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 16 of 41)	intron (NM_146016, intron 16 of 41)	16128.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76479888-4	chr11	76479388	76480388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 2 of 21)	MER117|DNA|hAT-Charlie	-11423.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	201.5	541.5	411.0	240.5	508.0	393.0
Merged-chr2-11553939-4	chr2	11553426	11554426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177758)	promoter-TSS (NM_001177758)	3.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83681774-4	chr6	83681283	83682283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GAA)n|Simple_repeat|Simple_repeat	-3926.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	1.5	15.0	4.0	0.0	3.5	6.5
Merged-chr1-51520480-4	chr1	51519968	51520968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151621, intron 3 of 3)	intron (NR_151621, intron 3 of 3)	-42069.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46265578-4	chr11	46265068	46266068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252459, intron 13 of 30)	Lx8|LINE|L1	30011.0	NM_177075	320116.0	Mm.39600	NM_177075	ENSMUSG00000048721	Fndc9	C030019I05Rik	fibronectin type III domain containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106741468-4	chr11	106740958	106741958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR51B_Mm|LTR|ERVK?	-9768.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-52308800-4	chr12	52308286	52309286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029760, intron 10 of 10)	intron (NM_029760, intron 10 of 10)	171823.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	31.0	45.0	71.5	33.5	97.0	65.5
Merged-chr15-101113383-4	chr15	101112897	101113897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2358.0	NM_144790	208258.0	Mm.152952	NM_144790	ENSMUSG00000047034	Ankrd33	A930021G21Rik|Panky|Panky-a	ankyrin repeat domain 33	protein-coding	86.5	293.5	166.0	103.0	264.5	187.0
Merged-chr18-32377177-4	chr18	32376677	32377677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083334)	promoter-TSS (NM_001083334)	-40.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	110.0	295.5	136.5	119.0	174.5	123.5
Merged-chr7-83597058-4	chr7	83596553	83597553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177695, intron 4 of 22)	intron (NM_177695, intron 4 of 22)	12122.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	3.5	16.0	12.0	2.5	15.5	10.5
Merged-chr19-38836550-4	chr19	38836067	38837067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362424)	promoter-TSS (NM_001362424)	-12.0	NM_145952	209478.0	Mm.391153	NM_145952	ENSMUSG00000048720	Tbc1d12	BC033574	TBC1D12: TBC1 domain family, member 12	protein-coding	2.0	9.5	1.0	0.0	0.0	1.0
Merged-chr10-7956302-4	chr10	7955808	7956808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138667)	promoter-TSS (NM_138667)	-185.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99336606-4	chr5	99336082	99337082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-83655.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31216112-4	chr3	31215570	31216570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172861, intron 7 of 7)	L1MA4|LINE|L1	66150.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119444901-4	chr9	119444344	119445344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172456)	promoter-TSS (NM_172456)	-116.0	NR_153320	208194.0	Mm.101578	NM_172456	ENSMUSG00000042787	Exog	AW557704|ENGL-B|ENGL-a|Endogl1|Endogl2|Engl|Engla|Englb	endo/exonuclease (5'-3'), endonuclease G-like	protein-coding	11.5	18.0	9.0	2.0	35.5	9.5
Merged-chr6-86556865-4	chr6	86556349	86557349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037961, intron 3 of 4)	B1F1|SINE|Alu	29448.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-36475827-4	chr3	36475334	36476334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105976)	promoter-TSS (NR_105976)	53.0	NM_009673	11747.0	Mm.1620	NM_009673	ENSMUSG00000027712	Anxa5	Anx5|R74653	annexin A5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-18991138-4	chr7	18990637	18991637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145579)	promoter-TSS (NM_145579)	-108.0	NM_145579	232934.0	Mm.440069	NM_145579	ENSMUSG00000048481	Mypop	Myodysa|P42pop	Myb-related transcription factor, partner of profilin	protein-coding	10.0	23.0	1.0	10.0	23.0	1.0
Merged-chr1-33907614-4	chr1	33907108	33908108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276764)	promoter-TSS (NM_001276764)	13.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28809618-4	chr7	28809139	28810139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-1251.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72355284-6	chr6	72354827	72355827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144916)	promoter-TSS (NM_144916)	-156.0	NM_144916	232086.0	Mm.491165	NM_144916	ENSMUSG00000055912	Tmem150a	BC014685|Tmem150	transmembrane protein 150A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70769105-4	chr8	70768607	70769607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008841, exon 15 of 16)	exon (NM_008841, exon 15 of 16)	-2444.0	NM_023065	65972.0	Mm.30241	NM_023065		Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	149.0	186.5	95.5	61.0	213.0	110.5
Merged-chr15-82899776-4	chr15	82899280	82900280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045068, intron 1 of 3)	CpG	700.0	NR_045068	100504637.0	Mm.440928	NR_045068	ENSMUSG00000100199	Gm20324	-	predicted gene, 20324	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-128713052-4	chr1	128712552	128713552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120753.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	44.5	105.0	45.5	67.5	88.5	94.5
Merged-chr1-149955676-4	chr1	149955173	149956173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	5617.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-103347615-4	chr12	103347119	103348119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 1 of 9)	intron (NM_023049, intron 1 of 9)	8382.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125042180-4	chr6	125041689	125042689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133345, intron 1 of 7)	intron (NM_133345, intron 1 of 7)	2341.0	NM_133345	28019.0	Mm.262547	NM_133345	ENSMUSG00000030330	Ing4	D6Wsu147e|D6Xrf92|p29ING4	inhibitor of growth family, member 4	protein-coding	25.0	47.5	49.5	13.0	71.0	37.0
Merged-chr5-110106974-2	chr5	110106474	110107474	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145147, intron 2 of 9)	intron (NM_145147, intron 2 of 9)	1223.0	NM_145147	107999.0	Mm.86267	NM_145147	ENSMUSG00000033434	Gtpbp6	AV119224|Pgbpll|pgpl	GTP binding protein 6 (putative)	protein-coding	2.0	0.0	0.0	0.0	0.5	0.5
Merged-chr15-97581899-4	chr15	97581392	97582392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	123930.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166711832-4	chr2	166711341	166712341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	1991.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73541700-4	chr7	73541194	73542194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081345)	promoter-TSS (NM_001081345)	52.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8311037-4	chr17	8310516	8311516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134114)	promoter-TSS (NM_134114)	-72.0	NM_001357890	106489.0	Mm.311080	NM_134114	ENSMUSG00000073468	Sft2d1	5630401J11Rik|AA409698	SFT2 domain containing 1	protein-coding	121.5	322.0	260.0	77.5	218.0	163.0
Merged-chr1-156474275-4	chr1	156473767	156474767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009230)	promoter-TSS (NM_009230)	61.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	77.0	121.5	120.5	63.5	145.5	108.0
Merged-chr7-127968351-4	chr7	127967851	127968851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139149, intron 1 of 14)	intron (NM_139149, intron 1 of 14)	872.0	NM_139149	233908.0	Mm.277680	NM_139149	ENSMUSG00000030795	Fus	D430004D17Rik|D930039C12Rik|Fus1|Tls	fused in sarcoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123551986-4	chr4	123551497	123552497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 2 of 92)	intron (NM_001199137, intron 2 of 92)	-64423.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55293326-4	chr19	55292841	55293841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027976, intron 17 of 21)	intron (NM_027976, intron 17 of 21)	22695.0	NM_001360595	66980.0	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6	zinc finger, DHHC domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-143739599-4	chr1	143739093	143740093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023505)	promoter-TSS (NM_023505)	-22.0	NM_023505	69367.0	Mm.272727	NM_023505	ENSMUSG00000018196	Glrx2	1700010P22Rik|AI645710|Grx2	glutaredoxin 2 (thioltransferase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65575525-4	chr9	65575042	65576042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 1 of 5)	MIR|SINE|MIR	4545.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	62.5	137.5	117.5	65.0	95.0	92.5
Merged-chr19-5489193-4	chr19	5488692	5489692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153768)	promoter-TSS (NR_153768)	-813.0	NR_153769	71711.0	Mm.27697	NM_027877	ENSMUSG00000024906	Mus81	1200008A18Rik|AI182501|AW045863	MUS81 structure-specific endonuclease subunit	protein-coding	6.5	4.5	3.5	5.0	9.5	2.5
Merged-chr5-143180777-4	chr5	143180243	143181243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045482)	promoter-TSS (NM_001045482)	32.0	NM_001359235	57782.0	Mm.320419	NM_021326	ENSMUSG00000061898	Rbak	-	RB-associated KRAB zinc finger	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91476547-3	chr16	91476037	91477037	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B1|LTR|ERVL	-8678.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96935233-4	chr11	96934750	96935750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_146026, exon 3 of 3)	3' UTR (NM_146026, exon 3 of 3)	5926.0	NM_146026	217138.0	Mm.342551	NM_146026	ENSMUSG00000047040	Prr15l	Atad4|BC022765|E230006A12Rik	proline rich 15-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-17695029-4	chr13	17694538	17695538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138654)	promoter-TSS (NM_138654)	-273.0	NM_138654	192136.0	Mm.364180	NM_138654	ENSMUSG00000055137	Sugct	5033411D12Rik|D17907	succinyl-CoA glutarate-CoA transferase	protein-coding	51.0	55.0	68.5	35.5	92.5	58.0
Merged-chr16-64873561-2	chr16	64873061	64874061	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21560.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29517336-4	chr6	29516827	29517827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9298.0	NM_001311083	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-89505044-4	chr13	89504534	89505534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35602.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	9.0	2.5	10.0	0.0	0.0	1.5
Merged-chr2-11429766-4	chr2	11429241	11430241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31241.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14291615-2	chr2	14291115	14292115	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 12 of 29)	intron (NM_008625, intron 12 of 29)	30612.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-84751595-4	chr6	84751082	84752082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 19 of 21)	Lx5|LINE|L1	-157674.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46650204-4	chr4	46649723	46650723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198664)	promoter-TSS (NM_198664)	-24.0	NM_198664	381605.0	Mm.331595	NM_198664	ENSMUSG00000039813	Tbc1d2	A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1	TBC1 domain family, member 2	protein-coding	9.5	17.0	16.5	14.0	16.5	18.0
Merged-chr11-59809838-4	chr11	59809374	59810374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045686)	promoter-TSS (NR_045686)	165.0	NM_001271356	216805.0	Mm.339640	NM_146018	ENSMUSG00000032633	Flcn	AU014660|B430214A04Rik|Bhd|FLCL	folliculin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66068070-2	chr5	66067570	66068570	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	30109.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-76951255-4	chr5	76950767	76951767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356973)	promoter-TSS (NM_001356973)	-35.0	NM_001356974	67054.0	Mm.182931	NM_025939	ENSMUSG00000029247	Paics	2610511I09Rik|ADE2H1|AIRC|PAIS	phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8846675-4	chr17	8846169	8847169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011866, intron 1 of 21)	intron (NM_011866, intron 1 of 21)	-3316.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.0	19.0	7.5	3.0	6.5	10.0
Merged-chr2-165919954-2	chr2	165919454	165920454	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35116.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	1.0	3.5	6.5	7.0	13.0	2.0
Merged-chr6-116724670-4	chr6	116724165	116725165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7907.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-93268225-4	chr15	93267719	93268719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346785, intron 1 of 7)	intron (NM_001346785, intron 1 of 7)	6960.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-96160683-4	chr5	96160168	96161168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144910, intron 1 of 11)	intron (NM_144910, intron 1 of 11)	879.0	NM_001285511	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	5.0	10.0	13.5	5.0	4.0	24.5
Merged-chr8-26118769-4	chr8	26118245	26119245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357292)	promoter-TSS (NM_001357292)	479.0	NM_207659	320191.0	Mm.334464	NM_207659	ENSMUSG00000037234	Hook3	5830454D03Rik|AI317159|E330005F07Rik	hook microtubule tethering protein 3	protein-coding	1.0	16.0	5.0	3.5	9.0	9.5
Merged-chr5-105876446-4	chr5	105875961	105876961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018759)	promoter-TSS (NM_018759)	-107.0	NR_030777	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71456074-2	chr6	71455574	71456574	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-15437.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-114138692-2	chr10	114138192	114139192	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	662678.0	NM_146241	237553.0	Mm.445550	NM_146241	ENSMUSG00000050663	Trhde	9330155P21Rik	TRH-degrading enzyme	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77875014-4	chr15	77874505	77875505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32830.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-56953343-4	chr4	56952835	56953835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5906.0	NM_175518	242474.0	Mm.296632	NM_175518	ENSMUSG00000055296	Tmem245	A630051L19Rik|AI957324|D730040F13Rik	transmembrane protein 245	protein-coding	1.0	6.5	6.0	25.5	4.5	9.0
Merged-chr16-8831071-4	chr16	8830578	8831578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081400, intron 1 of 3)	CpG	978.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103213713-4	chr3	103213214	103214214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	42059.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	28.5	33.0	27.0	28.5	33.0	21.5
Merged-chr13-64432405-4	chr13	64431898	64432898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053180)	promoter-TSS (NM_053180)	-155.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	31.0	98.0	67.0	51.5	140.0	35.5
Merged-chr4-59815611-4	chr4	59815120	59816120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	intron (NM_172468, intron 1 of 8)	9970.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	3.5	24.0	12.5	1.0	8.0	7.0
Merged-chr15-8109191-4	chr15	8108673	8109673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133227)	promoter-TSS (NM_133227)	-140.0	NM_133227	170762.0	Mm.295168	NM_133227	ENSMUSG00000022142	Nup155	D930027M19Rik|mKIAA0791	nucleoporin 155	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-83644449-4	chr2	83643951	83644951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026934)	promoter-TSS (NM_026934)	-127.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	4.0	17.0	26.5	11.0	25.0	22.5
Merged-chr3-14641638-4	chr3	14641147	14642147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024495)	promoter-TSS (NM_024495)	-80.0	NM_024495	71934.0	Mm.158776	NM_024495	ENSMUSG00000027555	Car13	2310075C21Rik|Ca13	carbonic anhydrase 13	protein-coding	12.5	26.0	16.0	7.0	17.0	33.5
Merged-chr16-76373148-4	chr16	76372642	76373642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173440)	promoter-TSS (NM_173440)	-93.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-77900898-2	chr14	77900398	77901398	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-3341.0	NM_178825	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-148918605-4	chr3	148918102	148919102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081298, intron 1 of 23)	URR1B|DNA|hAT-Charlie	36033.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	33.0	110.5	71.5	33.0	75.5	49.5
Merged-chr8-47990553-4	chr8	47990032	47991032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133791)	promoter-TSS (NM_133791)	19.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191072696-3	chr1	191072213	191073213	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198654, intron 4 of 5)	intron (NM_198654, intron 4 of 5)	9692.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	283.0	821.5	497.5	251.5	727.0	521.5
Merged-chr7-29307908-4	chr7	29307401	29308401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013874, intron 1 of 11)	CpG	3896.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	0.0	0.0	0.5	0.0	1.5	0.0
Merged-chr18-40219413-4	chr18	40218926	40219926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023311)	promoter-TSS (NM_023311)	-27.0	NM_023311	67180.0	Mm.270382	NM_023311	ENSMUSG00000024487	Yipf5	2610311I19Rik|AA408236|Yip1a	Yip1 domain family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57466311-4	chr9	57465807	57466807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301635, intron 1 of 5)	intron (NM_001301635, intron 1 of 5)	1753.0	NM_001301634	56807.0	Mm.102278	NM_020270	ENSMUSG00000040722	Scamp5	Sc5	secretory carrier membrane protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40644900-2	chr10	40644400	40645400	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_133568, intron 3 of 4)	intron (NR_133568, intron 3 of 4)	14889.0	NR_133568	70503.0	Mm.252862	NM_027442	ENSMUSG00000063428	Ddo	5330420D20Rik|5730402C02Rik|AI467244	D-aspartate oxidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-6461586-4	chr13	6461081	6462081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86576.0	NM_145131	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8992362-4	chr15	8991860	8992860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198024, intron 1 of 13)	MIRb|SINE|MIR	24411.0	NM_198024	223332.0	Mm.321371	NM_198024	ENSMUSG00000048424	Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110601997-4	chr12	110601466	110602466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030238, intron 1 of 76)	CpG	571.0	NM_030238	13424.0	Mm.181430	NM_030238	ENSMUSG00000018707	Dync1h1	9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325	dynein cytoplasmic 1 heavy chain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-80879881-4	chr8	80879381	80880381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001301298, exon 1 of 11)	5' UTR (NM_001301298, exon 1 of 11)	598.0	NM_021356	14388.0	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	20.0	29.5	33.0	25.5	82.0	31.0
Merged-chr7-16098506-4	chr7	16097983	16098983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025898)	promoter-TSS (NM_025898)	-97.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	9.0	28.0	11.5	10.0	35.0	15.5
Merged-chr1-151344429-4	chr1	151343910	151344910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359262)	promoter-TSS (NM_001359262)	-76.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-144003472-4	chr1	144002929	144003929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009061, intron 1 of 4)	intron (NM_009061, intron 1 of 4)	720.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128819180-4	chr2	128818655	128819655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355629, intron 1 of 18)	intron (NM_001355629, intron 1 of 18)	852.0	NM_001355629	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	13.5	71.5	44.5	26.0	40.5	46.0
Merged-chr7-134693356-4	chr7	134692846	134693846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033420, intron 1 of 51)	MTD|LTR|ERVL-MaLR	22659.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-22724330-4	chr2	22723834	22724834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-49993.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70539468-4	chr8	70538961	70539961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007924)	promoter-TSS (NM_007924)	-214.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	57.5	152.5	120.0	51.5	220.5	135.5
Merged-chr5-72182944-4	chr5	72182434	72183434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14745.0	NM_001356614	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80080491-2	chr11	80079991	80080991	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018776, intron 1 of 7)	intron (NM_018776, intron 1 of 7)	500.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19008027-4	chr10	19007543	19008543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166402, intron 2 of 7)	intron (NM_001166402, intron 2 of 7)	3920.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	10.5	0.0	1.5	10.0	0.0	1.5
Merged-chr3-116184594-4	chr3	116184105	116185105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54917.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-36864254-4	chr14	36863737	36864737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55298.0	NM_001347503	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95633475-4	chr8	95632984	95633984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030198)	promoter-TSS (NM_030198)	-75.0	NM_030198	78833.0	Mm.35546	NM_030198	ENSMUSG00000031669	Gins3	2700085M18Rik|AI616142	GINS complex subunit 3 (Psf3 homolog)	protein-coding	0.0	0.0	2.5	0.0	1.0	5.5
Merged-chr3-109267164-4	chr3	109266674	109267674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73509.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	1.5	15.5	1.5	8.5	16.0	17.5
Merged-chr4_GL456216_random-16498-1	chr4_GL456216_random	15998	16998	+	1000.0	f0_c57.idr	intron (NM_001033326, intron 1 of 6)	CpG	617.0	NM_001033326	236082.0	Mm.305345	NM_001033326	ENSMUSG00000063897	Dhrsx	C80877|D4Ertd296e|Dhrsxy|Pscad	dehydrogenase/reductase (SDR family) X chromosome	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82890606-4	chr11	82890047	82891047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102717)	promoter-TSS (NR_102717)	77.0	NR_102719	19364.0	Mm.9286	NM_011235	ENSMUSG00000018841	Rad51d	R51H3|Rad51l3|TRAD|Trad-d5	RAD51 paralog D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106157269-2	chr11	106156769	106157769	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001356459, exon 5 of 5)	3' UTR (NM_001356459, exon 5 of 5)	2658.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31195988-4	chr5	31195477	31196477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153680, exon 6 of 15)	exon (NM_153680, exon 6 of 15)	2673.0	NM_153680	266781.0	Mm.6118	NM_153680	ENSMUSG00000029146	Snx17	5830447M19Rik|AI790646|D5Ertd260e|b2b1625.1Clo|mKIAA0064	sorting nexin 17	protein-coding	21.5	51.5	47.0	5.5	16.5	25.0
Merged-chr15-99033320-2	chr15	99032820	99033820	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009448, intron 1 of 3)	intron (NM_009448, intron 1 of 3)	3429.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97174825-3	chr15	97174289	97175289	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7545.0	NR_155279	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-17902585-4	chr14	17902098	17903098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	MIR3|SINE|MIR	-79046.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	24.5	35.0	81.5	36.5	83.5	69.0
Merged-chr8-70001350-4	chr8	70000834	70001834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4950.0	NM_145596	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	178.5	441.5	280.0	187.5	432.0	297.5
Merged-chr7-30232854-4	chr7	30232349	30233349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360649)	promoter-TSS (NM_001360649)	-652.0	NM_025548	66411.0	Mm.27947	NM_025548	ENSMUSG00000006095	Tbcb	2410007D12Rik|AU041393|CG22|CKAPI|Ckap1	tubulin folding cofactor B	protein-coding	14.0	47.0	37.0	13.5	37.5	64.5
Merged-chr4-8912879-4	chr4	8912378	8913378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161554.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	40.5	114.0	55.5	44.5	113.0	51.5
Merged-chr9-120577726-4	chr9	120577222	120578222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_073359, exon 1 of 1)	non-coding (NR_073359, exon 1 of 1)	391.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74364736-2	chr1	74364236	74365236	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033345, intron 6 of 9)	intron (NM_001033345, intron 6 of 9)	2628.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79180948-4	chr2	79180426	79181426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74500.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112012859-3	chr13	112012364	112013364	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	144928.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	1.0	4.0	1.0	0.0	8.0	5.0
Merged-chr11-75169776-2	chr11	75169276	75170276	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010430, exon 1 of 2)	5' UTR (NM_010430, exon 1 of 2)	479.0	NM_010430	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100703271-2	chr11	100702771	100703771	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030150, intron 3 of 12)	intron (NM_030150, intron 3 of 12)	1000.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-150595570-4	chr5	150595059	150596059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1034.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91725261-2	chr16	91724756	91725756	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026994, intron 1 of 11)	intron (NM_026994, intron 1 of 11)	3546.0	NM_026994	66609.0	Mm.109823	NM_026994	ENSMUSG00000058240	Cryzl1	2210407J23Rik|2410006O11Rik|QOH-1	crystallin, zeta (quinone reductase)-like 1	protein-coding	2.5	0.0	2.5	0.0	6.0	0.5
Merged-chr9-37489001-7	chr9	37488476	37489476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146222)	promoter-TSS (NM_146222)	-345.0	NM_146222	235184.0	Mm.127892	NM_146222	ENSMUSG00000042138	Msantd2	2810450G17Rik|9530092B10Rik	Myb/SANT-like DNA-binding domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-97355346-4	chr5	97354851	97355851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	36979.0	NM_001033191	97243.0	Mm.11746	NM_001033191	ENSMUSG00000046000	Naa11	Ard1b|Ard2|C80008	N(alpha)-acetyltransferase 11, NatA catalytic subunit	protein-coding	0.0	1.0	0.0	0.0	13.0	0.0
Merged-chr18-37881119-1	chr18	37880619	37881619	+	1000.0	f1_c57bl6.idr	intron (NM_007858, intron 16 of 26)	intron (NM_007858, intron 16 of 26)	-26459.0	NR_105945	102465592.0		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	1.0	0.0	0.0	0.0	1.5	0.5
Merged-chr10-63176604-4	chr10	63176102	63177102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182992, intron 2 of 19)	Charlie1a|DNA|hAT-Charlie	27350.0	NM_182992	68802.0	Mm.259767	NM_182992	ENSMUSG00000020067	Mypn	1110056A04Rik|9830112J03|AI853556|mKIAA4170	myopalladin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11766616-4	chr19	11766108	11767108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3807.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	17.0	51.5	44.0	15.5	57.0	32.5
Merged-chr14-64943940-4	chr14	64943440	64944440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 1 of 9)	ID4_|SINE|ID	5917.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-143100848-2	chr6	143100348	143101348	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029897)	promoter-TSS (NM_029897)	-696.0	NM_001109688	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-11343669-4	chr10	11343176	11344176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010146, exon 1 of 4)	exon (NM_010146, exon 1 of 4)	231.0	NM_010146	13853.0	Mm.89946	NM_010146	ENSMUSG00000055493	Epm2a	TG-B|Tg(TcraK,TcrbK)TG-BFlv	epilepsy, progressive myoclonic epilepsy, type 2 gene alpha	protein-coding	22.5	15.5	16.0	15.5	37.5	25.0
Merged-chr15-9748883-4	chr15	9748355	9749355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177123)	promoter-TSS (NM_177123)	13.0	NM_177123	320277.0	Mm.127822	NM_177123	ENSMUSG00000072663	Spef2	C230086A09Rik	sperm flagellar 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96220892-4	chr3	96220389	96221389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175662)	promoter-TSS (NM_175662)	-9.0	NM_175662	319176.0	Mm.358954	NM_175662	ENSMUSG00000068855	Hist2h2ac	H2a-613b	histone cluster 2, H2ac	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86440705-4	chr1	86440216	86441216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14387.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16122561-4	chr19	16122064	16123064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-10267.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	33.0	71.5	63.5	11.0	50.5	75.5
Merged-chr4-126153993-2	chr4	126153493	126154493	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025856, intron 6 of 11)	B1_Mur4|SINE|Alu	5990.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-18473650-4	chr9	18473179	18474179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028935)	promoter-TSS (NM_028935)	-34.0	NM_028160	72230.0	Mm.289689	NM_028160	ENSMUSG00000074500	Zfp558	1700007A21Rik|4932704I17Rik|Zfp558-ps	zinc finger protein 558	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21411510-4	chr5	21411030	21412030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 1 of 18)	intron (NM_029195, intron 1 of 18)	13147.0	NM_029195	75172.0	Mm.426695	NM_029195	ENSMUSG00000064280	Ccdc146	4930528G09Rik|mKIAA1505	coiled-coil domain containing 146	protein-coding	21.0	70.0	19.5	22.5	69.5	19.0
Merged-chr2-35196430-4	chr2	35195916	35196916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026697, intron 1 of 7)	intron (NM_026697, intron 1 of 7)	4704.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102748319-4	chr12	102747832	102748832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142939, intron 1 of 1)	intron (NM_001142939, intron 1 of 1)	4572.0	NM_177140	320351.0	Mm.86546	NM_177140	ENSMUSG00000046675	Tmem251	D230037D09Rik	transmembrane protein 251	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-33212023-4	chr15	33211514	33212514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018755, intron 2 of 8)	MIR|SINE|MIR	128885.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-62963796-2	chr14	62963296	62964296	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20714.0	NM_001037751	432867.0	Mm.99387	NM_001037751	ENSMUSG00000075574	Defb48	Defb42|EG432867	defensin beta 48	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88751498-4	chr15	88750994	88751994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181412)	promoter-TSS (NM_181412)	-217.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116005112-4	chr11	116004611	116005611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005608, intron 32 of 39)	CpG	7608.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	14.0	24.5	15.5	1.5	8.0	8.0
Merged-chr4-122884198-4	chr4	122883708	122884708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007598, intron 1 of 12)	intron (NM_007598, intron 1 of 12)	1868.0	NM_001358035	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	29.5	38.5	28.0	11.5	20.0	20.0
Merged-chr11-97996007-4	chr11	97995491	97996491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152188, exon 1 of 6)	non-coding (NR_152188, exon 1 of 6)	182.0	NM_207231	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-75933624-4	chr5	75933117	75934117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010612, exon 30 of 30)	3' UTR (NM_010612, exon 30 of 30)	44811.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	11.5	27.5	14.5	7.5	8.0	15.5
Merged-chr2-137608736-3	chr2	137608228	137609228	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-492208.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9978584-4	chr19	9978076	9979076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2024.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	41.5	88.5	36.0	24.5	75.0	58.5
Merged-chr12-24708189-4	chr12	24707688	24708688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009104)	promoter-TSS (NM_009104)	-66.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	1.5	1.0	8.5	2.0	5.5	6.5
Merged-chr13-52572666-4	chr13	52572181	52573181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046069, intron 1 of 3)	intron (NR_046069, intron 1 of 3)	544.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95983167-2	chr3	95982667	95983667	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2343.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	3.0	6.5	3.0	32.0	91.0	51.0
Merged-chr17-69182295-4	chr17	69181804	69182804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	22948.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70596093-2	chr8	70595582	70596582	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_023627, exon 7 of 11)	exon (NM_023627, exon 7 of 11)	1601.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	5.5	0.0	4.5	0.0	0.0	1.5
Merged-chr19-40679177-4	chr19	40678681	40679681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	HAL1|LINE|L1	19411.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	29.5	94.5	69.0	65.0	164.5	106.0
Merged-chr17-74802922-3	chr17	74802428	74803428	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152817, intron 13 of 19)	L1MB2|LINE|L1	85178.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	44.0	115.5	85.0	4.5	1.5	3.0
Merged-chr11-118470432-4	chr11	118469916	118470916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6416.0	NM_172573	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-129990978-2	chr7	129990478	129991478	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28813.0	NR_046077	100043150.0	Mm.334264	NR_046077	ENSMUSG00000108504	Gm4265	-	predicted gene 4265	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55469361-3	chr19	55468872	55469872	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 6 of 8)	intron (NM_001360431, intron 6 of 8)	153315.0	NM_001293686	53611.0	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	0.0	6.5	0.5	9.5	4.5	7.5
Merged-chr8-109682317-4	chr8	109681823	109682823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155034, intron 3 of 10)	intron (NR_155034, intron 3 of 10)	10971.0	NR_155034	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50915832-3	chr11	50915326	50916326	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294323, intron 1 of 5)	CpG	350.0	NM_178447	22678.0	Mm.259230	NM_009550	ENSMUSG00000049321	Zfp2	9930007F06Rik|Fnp-2|Zfp-2|mKR2|mkr-2|mszf87	zinc finger protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4150968-4	chr7	4150482	4151482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_021454)	TTS (NM_021454)	-1110.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48410556-2	chr17	48410056	48411056	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010913)	promoter-TSS (NM_010913)	106.0	NM_001357904	106821.0	Mm.203943	NM_207219	ENSMUSG00000040771	Oard1	AI314976|AW558560	O-acyl-ADP-ribose deacylase 1	protein-coding	33.0	104.5	82.5	43.5	89.0	80.0
Merged-chr7-105399160-4	chr7	105398667	105399667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242363, intron 1 of 12)	intron (NM_001242363, intron 1 of 12)	887.0	NM_001242364	74349.0	Mm.30254	NM_199009	ENSMUSG00000044465	Fam160a2	4632419K20Rik|6530415H11Rik|FHIP	family with sequence similarity 160, member A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34526383-4	chr19	34525928	34526928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021460, intron 1 of 9)	intron (NM_021460, intron 1 of 9)	1046.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83171893-4	chr15	83171402	83172402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029787, intron 1 of 8)	CpG	306.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-104366516-4	chr7	104366026	104367026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7880.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	13.0	4.0	10.5	8.5	11.5	16.0
Merged-chr11-101972292-4	chr11	101971806	101972806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028207, exon 3 of 3)	3' UTR (NM_028207, exon 3 of 3)	-5291.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70825376-4	chr12	70824820	70825820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028127)	promoter-TSS (NM_028127)	-194.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80643832-4	chr12	80643339	80644339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026244)	promoter-TSS (NM_026244)	272.0	NM_007951	13877.0	Mm.246551	NM_007951	ENSMUSG00000021131	Erh	Mer|Prei1	ERH mRNA splicing and mitosis factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94569513-4	chr16	94569005	94570005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007890)	promoter-TSS (NM_007890)	-701.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-23176325-2	chr10	23175825	23176825	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010167, intron 3 of 18)	MTC|LTR|ERVL-MaLR	173565.0	NM_001347372	14051.0	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-15982472-2	chr7	15981972	15982972	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081418, intron 6 of 13)	B3A|SINE|B2	-14937.0	NM_153068	259300.0	Mm.138215	NM_153068	ENSMUSG00000074364	Ehd2	BC027084|C130052H20Rik	EH-domain containing 2	protein-coding	1.0	0.0	5.0	1.0	0.0	5.0
Merged-chr5-8623086-4	chr5	8622570	8623570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198620)	promoter-TSS (NM_198620)	-118.0	NM_198620	242819.0	Mm.332192	NM_198620	ENSMUSG00000040570	Rundc3b	Gm440	RUN domain containing 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6157381-4	chr19	6156873	6157873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7066.0	NM_001356604	74481.0	Mm.159219	NM_028967	ENSMUSG00000039699	Batf2	B-ATF-2	basic leucine zipper transcription factor, ATF-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-178410485-2	chr1	178409985	178410985	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026626, intron 1 of 6)	B4A|SINE|B4	4467.0	NM_026626	68226.0	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61555185-4	chr18	61554693	61555693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146087)	promoter-TSS (NM_146087)	-80.0	NM_001357499	93687.0	Mm.26908	NM_146087	ENSMUSG00000024576	Csnk1a1	2610208K14Rik|4632404G05Rik|5430427P18Rik|CK1a|Csnk1a	casein kinase 1, alpha 1	protein-coding	4.5	30.0	10.0	3.5	11.0	5.0
Merged-chr5-65960476-4	chr5	65959966	65960966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6658.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9027521-4	chr3	9027023	9028023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22800.0	NM_001357075	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	124.5	216.5	161.5	52.5	129.0	83.0
Merged-chr19-5663737-4	chr19	5663244	5664244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164482)	promoter-TSS (NM_001164482)	-37.0	NM_001164480	20469.0	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	21.5	50.0	58.0	30.0	60.5	39.0
Merged-chr11-74832949-4	chr11	74832469	74833469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010813, intron 1 of 5)	intron (NM_010813, intron 1 of 5)	2045.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	45.5	110.0	79.0	84.0	140.5	89.0
Merged-chr12-77238038-4	chr12	77237549	77238549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016893)	promoter-TSS (NM_016893)	-55.0	NM_001252614	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57653840-2	chr9	57653340	57654340	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304761)	promoter-TSS (NM_001304761)	-209.0	NM_001304761	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3369529-4	chr5	3369042	3370042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	25649.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-17024008-4	chr7	17023466	17024466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011155, intron 1 of 12)	intron (NM_011155, intron 1 of 12)	3948.0	NM_011155	19060.0	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	13.5	62.0	40.5	28.5	68.5	67.0
Merged-chr2-77276317-4	chr2	77275826	77276826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175465, intron 1 of 17)	intron (NM_175465, intron 1 of 17)	4266.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47736249-4	chr9	47735729	47736729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	81979.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	79.5	171.5	107.5	93.5	155.5	82.5
Merged-chr2-129306200-4	chr2	129305675	129306675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040371, exon 4 of 5)	non-coding (NR_040371, exon 4 of 5)	3797.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	11.0	23.5	29.0	7.5	26.0	19.5
Merged-chr2-22807522-4	chr2	22807026	22808026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	33199.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135187670-3	chr5	135187172	135188172	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011714, exon 1 of 19)	exon (NM_011714, exon 1 of 19)	349.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-129591980-4	chr7	129591496	129592496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172255, exon 1 of 29)	exon (NM_172255, exon 1 of 29)	133.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81633727-4	chr10	81633209	81634209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027480, intron 2 of 19)	intron (NM_027480, intron 2 of 19)	5169.0	NM_027480	70615.0	Mm.304382	NM_027480	ENSMUSG00000054708	Ankrd24	4631433D01Rik|5730519E19Rik|D10Bur2e	ankyrin repeat domain 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142765175-4	chr3	142764664	142765664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145546)	promoter-TSS (NM_145546)	-83.0	NM_145546	229906.0	Mm.271756	NM_145546	ENSMUSG00000028271	Gtf2b	-	general transcription factor IIB	protein-coding	2.0	19.0	6.5	12.0	7.5	3.5
Merged-chr19-9975105-4	chr19	9974618	9975618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5482.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119942947-4	chr11	119942443	119943443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130862)	promoter-TSS (NM_130862)	-149.0	NM_001037754	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131091066-4	chr2	131090589	131091589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4324.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	47.5	127.0	72.0	43.5	181.0	95.5
Merged-chr1-23256741-4	chr1	23256245	23257245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-15524.0	NR_029533	387225.0		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	15.0	19.0	16.5	17.5	46.0	24.0
Merged-chr11-3136818-2	chr11	3136283	3137283	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 23 of 32)	intron (NM_030207, intron 23 of 32)	12762.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64374096-4	chr1	64373634	64374634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-158670.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129619107-4	chr4	129618612	129619612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198026)	promoter-TSS (NM_198026)	-19.0	NM_198026	230767.0	Mm.441132	NM_198026	ENSMUSG00000040795	Iqcc	BC026978	IQ motif containing C	protein-coding	5.0	52.0	13.0	15.5	25.5	25.0
Merged-chr13-113917758-4	chr13	113917254	113918254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	123246.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117114807-1	chr5	117114307	117115307	+	1000.0	f1_c57bl6.idr	intron (NM_001122666, intron 1 of 12)	intron (NM_001122666, intron 1 of 12)	1186.0	NM_001122666	71954.0	Mm.34456	NM_178622	ENSMUSG00000066900	Suds3	2400003N08Rik|2410008L21Rik|AU067672|mSds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	protein-coding	1.0	21.5	14.0	9.5	27.0	11.0
Merged-chr13-98761948-4	chr13	98761445	98762445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172591, intron 11 of 25)	intron (NM_172591, intron 11 of 25)	53504.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-105420897-4	chr11	105420395	105421395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039242, intron 4 of 5)	L2|LINE|L2	35840.0	NM_172568	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	18.5	43.5	35.5	18.0	41.5	34.5
Merged-chr4-43578699-4	chr4	43578184	43579184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172866)	promoter-TSS (NM_172866)	-51.0	NM_172866	242406.0	Mm.259311	NM_172866	ENSMUSG00000028468	Rgp1	1110029E03Rik|AI527196|F730001J03|mKIAA0258	RAB6A GEF compex partner 1	protein-coding	7.0	8.5	13.0	3.5	4.0	7.5
Merged-chr5-92083083-4	chr5	92082593	92083593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080797)	promoter-TSS (NM_001080797)	-176.0	NM_001080797	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25973294-4	chr8	25972792	25973792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029884, intron 1 of 17)	intron (NM_029884, intron 1 of 17)	3452.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	186.5	373.5	250.0	60.0	156.0	91.0
Merged-chr6-59208869-4	chr6	59208384	59209384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081145)	promoter-TSS (NM_001081145)	14.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72165045-4	chr6	72164560	72165560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41863.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-72711272-4	chr1	72710764	72711764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009084)	promoter-TSS (NM_009084)	4.0	NM_009084	19981.0	Mm.21529	NM_009084	ENSMUSG00000046330	Rpl37a	-	ribosomal protein L37a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146111136-3	chr3	146110638	146111638	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3102.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	6.0	43.5	43.0	85.5	171.5	109.0
Merged-chr6-149309641-4	chr6	149309087	149310087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001289662, exon 1 of 5)	5' UTR (NM_001289662, exon 1 of 5)	173.0	NM_001289662	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167755632-2	chr2	167755132	167756132	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	64455.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-74952233-4	chr9	74951718	74952718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113283)	promoter-TSS (NM_001113283)	-662.0	NM_001359816	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	28.0	114.0	75.5	33.0	75.5	56.0
Merged-chr10-127642948-4	chr10	127642462	127643462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009284)	promoter-TSS (NM_009284)	-24.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	198.0	427.0	277.0	187.0	399.0	290.5
Merged-chr3-109537919-2	chr3	109537419	109538419	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 15 of 26)	intron (NM_020505, intron 15 of 26)	-36088.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	2.5	4.5	4.0	0.0	7.0	6.0
Merged-chr17-29095508-4	chr17	29095006	29096006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007669, intron 1 of 2)	CpG	1737.0	NM_007669	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57230975-2	chr16	57230470	57231470	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_026254, intron 1 of 17)	intron (NM_026254, intron 1 of 17)	496.0	NM_026254	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27311802-4	chr2	27311318	27312318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 3 of 29)	MIR3|SINE|MIR	-64515.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-101958299-4	chr12	101957789	101958789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167914)	promoter-TSS (NM_001167914)	-46.0	NM_001167914	110616.0	Mm.271914	NM_029705	ENSMUSG00000021189	Atxn3	2210008M02Rik|AI463012|AI647473|ATX3|MJD1|Mjd|Sca3|ataxin-3	ataxin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-109890845-4	chr2	109890358	109891358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011699)	promoter-TSS (NM_011699)	-20.0	NM_011699	22343.0	Mm.235300	NM_011699	ENSMUSG00000027162	Lin7c	9130007B12Rik|AI303698|AU019331|AW125731|D2Ertd520e|LIN-7-C|LIN-7C|MALS-3|Veli3	lin-7 homolog C (C. elegans)	protein-coding	23.0	109.5	86.5	39.5	99.0	56.0
Merged-chr14-34549503-4	chr14	34548992	34549992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039071, intron 8 of 12)	CpG	-26691.0	NM_030062	78243.0	Mm.117483	NM_030062	ENSMUSG00000021797	9230112D13Rik	-	RIKEN cDNA 9230112D13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79527098-4	chr11	79526602	79527602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033711, exon 2 of 2)	3' UTR (NM_001033711, exon 2 of 2)	-3340.0	NM_001077496	216984.0	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	36.0	126.5	57.0	34.0	122.5	66.5
Merged-chr9-21167831-4	chr9	21167304	21168304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183408, intron 1 of 14)	intron (NM_183408, intron 1 of 14)	2090.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21412259-4	chr5	21411770	21412770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 1 of 18)	intron (NM_029195, intron 1 of 18)	12407.0	NM_029195	75172.0	Mm.426695	NM_029195	ENSMUSG00000064280	Ccdc146	4930528G09Rik|mKIAA1505	coiled-coil domain containing 146	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72159947-4	chr6	72159452	72160452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36755.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129081809-4	chr4	129081309	129082309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 7 of 8)	intron (NM_029219, intron 7 of 8)	23538.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-27429919-4	chr19	27429426	27430426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131940)	promoter-TSS (NR_131940)	-18.0	NR_131940	52874.0	Mm.261027	NM_177474	ENSMUSG00000041360	Pum3	1110069H02Rik|AA675048|D19Bwg1357e	pumilio RNA-binding family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166656353-4	chr2	166655841	166656841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	57491.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13671920-4	chr16	13671431	13672431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025653)	promoter-TSS (NM_025653)	73.0	NM_025653	67118.0	Mm.223689	NM_025653	ENSMUSG00000022684	Bfar	3010001A07Rik|3110001I22Rik|AI666707|AW107665|Bar|Rnf47	bifunctional apoptosis regulator	protein-coding	25.0	57.0	57.5	24.0	69.5	74.0
Merged-chr5-130024412-4	chr5	130023918	130024918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133768)	promoter-TSS (NM_133768)	-37.0	NM_133768	109900.0	Mm.23869	NM_133768	ENSMUSG00000025533	Asl	2510006M18Rik|ASAL	argininosuccinate lyase	protein-coding	13.5	24.5	13.0	7.5	22.0	21.0
Merged-chr12-4237191-4	chr12	4236702	4237702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001204912, exon 2 of 2)	3' UTR (NM_001204912, exon 2 of 2)	3175.0	NM_001204912	69709.0	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5689684-4	chr19	5689216	5690216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144868)	promoter-TSS (NM_144868)	585.0	NM_022012	26403.0	Mm.185026	NM_022012	ENSMUSG00000004054	Map3k11	2610017K16Rik|Mlk3|PTK1|SPRK	mitogen-activated protein kinase kinase kinase 11	protein-coding	153.0	367.0	268.0	144.5	404.0	255.0
Merged-chr14-21076027-4	chr14	21075526	21076526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243041)	promoter-TSS (NM_001243041)	-126.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-76152768-3	chr18	76152266	76153266	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17786.0	NR_105776	102465184.0		NR_105776	ENSMUSG00000098276	Mir6358	Gm27830|mmu-mir-6358	microRNA 6358	ncRNA	2.5	15.0	7.0	4.0	0.5	1.0
Merged-chr2-75832222-4	chr2	75831709	75832709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172666)	promoter-TSS (NM_172666)	32.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	3.0	17.0	9.0	0.0	9.0	7.5
Merged-chr15-103240338-4	chr15	103239849	103240849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002885)	promoter-TSS (NR_002885)	-48.0	NR_104427	15382.0	Mm.237064	NM_010447	ENSMUSG00000046434	Hnrnpa1	HDP-1|Hdp|Hnrpa1|hnRNP A1|hnrnp-A1	heterogeneous nuclear ribonucleoprotein A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-63468050-2	chr17	63467550	63468550	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 4 of 8)	intron (NM_015794, intron 4 of 8)	32530.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-131915574-2	chr4	131915074	131916074	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_102394, intron 1 of 2)	intron (NR_102394, intron 1 of 2)	4455.0	NR_102394	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3709996-4	chr7	3709487	3710487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5946.0	NM_029767	76846.0	Mm.13944	NM_029767	ENSMUSG00000006333	Rps9	3010033P07Rik|AL022771|AL022885	ribosomal protein S9	protein-coding	39.5	76.0	49.5	11.5	83.0	28.5
Merged-chr13-89383913-4	chr13	89383366	89384366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44B|LTR|ERVK	-156770.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167540006-2	chr2	167539506	167540506	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011427, intron 2 of 2)	intron (NM_011427, intron 2 of 2)	1811.0	NM_011427	20613.0	Mm.2093	NM_011427	ENSMUSG00000042821	Snai1	Sna|Sna1|Snail|Snail1	snail family zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-23894418-4	chr5	23893933	23894933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42200.0	NR_028536	100217436.0		NR_028536		Snord93	Gm22397|MBII-336	small nucleolar RNA, C/D box 93	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39899180-4	chr10	39898674	39899674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033628)	promoter-TSS (NR_033628)	64.0	NR_033628	213332.0	Mm.484359	NR_033628		Mfsd4b4	AA474331	major facilitator superfamily domain containing 4B4	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110109342-4	chr7	110108831	110109831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12728.0	NM_001355058	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64287593-4	chr7	64287091	64288091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172742)	promoter-TSS (NM_172742)	-79.0	NM_172742	233315.0	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89418444-4	chr3	89417949	89418949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016904)	promoter-TSS (NM_016904)	-102.0	NM_011368	20416.0	Mm.86595	NM_011368	ENSMUSG00000042626	Shc1	Shc|ShcA|p66|p66shc	src homology 2 domain-containing transforming protein C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55419138-4	chr1	55418631	55419631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	13185.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	3.0	9.5	3.0	0.0	20.5	2.5
Merged-chr10-100898697-4	chr10	100898208	100899208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157073.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35081182-4	chr7	35080675	35081675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24609.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67460036-4	chr7	67459543	67460543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87185.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	108.5	156.0	148.5	73.5	186.0	155.0
Merged-chr6-87496362-4	chr6	87495874	87496874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175476)	promoter-TSS (NM_175476)	-47.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	5.5	6.5	13.0	4.0	9.0	13.5
Merged-chr15-41784327-3	chr15	41783835	41784835	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 3 of 17)	intron (NR_152565, intron 3 of 17)	-4660.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111437716-4	chr12	111437196	111438196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4965.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88888291-2	chr5	88887791	88888791	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359211, intron 1 of 26)	intron (NM_001359211, intron 1 of 26)	1031.0	NM_018760	54403.0	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-6287890-2	chr7	6287390	6288390	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024928, intron 1 of 4)	intron (NM_001024928, intron 1 of 4)	1310.0	NM_001024928	384763.0	Mm.276279	NM_001024928	ENSMUSG00000054893	Zfp667	A830025F02Rik|Mip1|ZNF667	zinc finger protein 667	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80256009-4	chr15	80255499	80256499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009716, intron 1 of 2)	CpG	815.0	NM_009716	11911.0	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	86.5	155.0	131.5	84.0	179.0	146.0
Merged-chr8-69901690-4	chr8	69901179	69902179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_032004)	promoter-TSS (NM_032004)	-505.0	NM_032004	83984.0	Mm.432504	NM_032004	ENSMUSG00000047654	Tssk6	Sstk|TSK-6|TSSK-6	testis-specific serine kinase 6	protein-coding	122.5	253.0	163.0	89.5	227.5	137.5
Merged-chr2-102701691-4	chr2	102701177	102702177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077514, intron 1 of 10)	intron (NM_001077514, intron 1 of 10)	-4761.0	NM_011393	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	11.0	14.5	3.0	20.5	15.0	12.0
Merged-chr4-33099331-4	chr4	33098830	33099830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33226.0	NM_008075	14408.0	Mm.14116	NM_008075	ENSMUSG00000028280	Gabrr1	GABA-C	gamma-aminobutyric acid (GABA) C receptor, subunit rho 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150227407-4	chr4	150226888	150227888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-9809.0	NM_023119	13806.0	Mm.70666	NM_023119	ENSMUSG00000063524	Eno1	0610008I15|AL022784|Eno-1|MBP-1	enolase 1, alpha non-neuron	protein-coding	7.5	5.0	11.5	7.0	9.0	3.5
Merged-chr2-154264640-4	chr2	154264119	154265119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175167, intron 6 of 14)	intron (NM_175167, intron 6 of 14)	6740.0	NM_175167	71425.0	Mm.389341	NM_175167	ENSMUSG00000067998	Bpifb9a	4833413D08Rik|AI413838	BPI fold containing family B, member 9A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35634048-4	chr9	35633560	35634560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14142.0	NM_001167592	100312956.0	Mm.475850	NM_001167592	ENSMUSG00000094995	Pate3	Gm17365|Pate-dj	prostate and testis expressed 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-76531465-4	chr10	76530944	76531944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146006)	promoter-TSS (NM_146006)	-161.0	NM_146006	16987.0	Mm.55075	NM_146006	ENSMUSG00000033105	Lss	2810025N20Rik|D10Ertd116e|Osc	lanosterol synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57301766-4	chr16	57301274	57302274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025599)	TTS (NM_025599)	-8923.0	NM_027651	71027.0	Mm.158563	NM_027651	ENSMUSG00000022753	Tmem30c	4933401B01Rik|4933409A18Rik|Cdc50c	transmembrane protein 30C	protein-coding	50.5	73.0	83.5	13.5	23.5	27.0
Merged-chr18-57845285-4	chr18	57844767	57845767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33411.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	4.5	48.0	26.5	10.0	46.0	23.5
Merged-chr10-56547993-4	chr10	56547516	56548516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116035.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-4433144-1	chr10	4432644	4433644	+	1000.0	f1_balb.idr	promoter-TSS (NM_025343)	promoter-TSS (NM_025343)	539.0	NM_024261	73419.0	Mm.346733	NM_024261	ENSMUSG00000061759	Armt1	1700052N19Rik|AW320013|AW536799	acidic residue methyltransferase 1	protein-coding	58.5	85.0	68.0	67.5	115.0	60.0
Merged-chr19-12798626-4	chr19	12798124	12799124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134152)	promoter-TSS (NM_134152)	45.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	56.0	205.5	96.5	65.0	151.5	71.0
Merged-chr10-77969424-2	chr10	77968924	77969924	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 1 of 33)	intron (NM_138301, intron 1 of 33)	448.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99182320-4	chr9	99181839	99182839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42128.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53149769-4	chr18	53149281	53150281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26511.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	22.0	42.5	27.0	12.5	20.0	6.5
Merged-chr14-57571586-4	chr14	57571098	57572098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026526)	promoter-TSS (NM_026526)	-16.0	NR_152103	67518.0	Mm.376343	NR_152103	ENSMUSG00000097933	1700039M10Rik	-	RIKEN cDNA 1700039M10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-109051260-2	chr9	109050760	109051760	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357933, exon 1 of 4)	5' UTR (NM_001357933, exon 1 of 4)	103.0	NM_001357940	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11026450-4	chr4	11025910	11026910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	-18791.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102979330-4	chr2	102978825	102979825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77660.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	12.0	10.5	3.5	4.0	21.5	10.5
Merged-chr7-31148911-4	chr7	31148416	31149416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153431, intron 1 of 18)	(CAGC)n|Simple_repeat|Simple_repeat	2255.0	NM_027898	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	11.5	7.5	7.5	10.5	26.5	7.0
Merged-chr7-136308993-4	chr7	136308485	136309485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102277, intron 3 of 3)	intron (NR_102277, intron 3 of 3)	40430.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-167247189-4	chr1	167246672	167247672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030724, intron 1 of 6)	intron (NM_030724, intron 1 of 6)	37955.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47789084-2	chr6	47788584	47789584	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14568.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-37965476-2	chr18	37964976	37965976	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175684, intron 10 of 19)	intron (NM_175684, intron 10 of 19)	4255.0	NM_175684	319262.0	Mm.285060	NM_175684	ENSMUSG00000038524	Fchsd1	A030002D08Rik	FCH and double SH3 domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124608846-4	chr2	124608361	124609361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-1435.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50889321-4	chr15	50888846	50889846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035444)	promoter-TSS (NR_035444)	-232.0	NR_035444	100316685.0		NR_035444	ENSMUSG00000084458	Mir1907	Mirn1907|mmu-mir-1907	microRNA 1907	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17900964-4	chr17	17900473	17901473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13149.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-5015509-5	chr7	5014960	5015960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025324)	promoter-TSS (NM_025324)	-48.0	NM_025324	66056.0	Mm.19974	NM_025324	ENSMUSG00000051184	Zfp524	0610012F07Rik|2300009P13Rik|Znf524	zinc finger protein 524	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67380863-4	chr7	67380362	67381362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8004.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr19-4878621-4	chr19	4878135	4879135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013456)	promoter-TSS (NM_013456)	-33.0	NM_027476	70605.0	Mm.36885	NM_027476	ENSMUSG00000006463	Zdhhc24	5730496N17Rik|Leng4	zinc finger, DHHC domain containing 24	protein-coding	10.0	35.5	26.0	16.5	28.0	28.0
Merged-chr13-23446209-4	chr13	23445732	23446732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15215.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53247157-4	chr18	53246652	53247652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	1490.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	35.0	105.0	64.5	59.0	111.5	71.5
Merged-chr4-141239524-4	chr4	141239023	141240023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3361.0	NM_172520	213649.0	Mm.134460	NM_172520	ENSMUSG00000028919	Arhgef19	6030432F23|6430573B13Rik|WGEF	Rho guanine nucleotide exchange factor (GEF) 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47953366-4	chr6	47952840	47953840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178898)	promoter-TSS (NM_178898)	-50.0	NM_178898	101197.0	Mm.241063	NM_178898	ENSMUSG00000045466	Zfp956	AI894139	zinc finger protein 956	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122354347-4	chr5	122353902	122354902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144912)	promoter-TSS (NM_144912)	74.0	NR_152872	56433.0	Mm.216528	NM_019780	ENSMUSG00000029462	Vps29	2010015D08Rik|AW049835|PEP11	VPS29 retromer complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6582939-4	chr2	6582443	6583443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 11 of 15)	ORR1E|LTR|ERVL-MaLR	138719.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180763372-2	chr1	180762872	180763872	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37329.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73620875-4	chr15	73620369	73621369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033219, intron 1 of 7)	intron (NM_001033219, intron 1 of 7)	-3545.0	NM_001357747	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-47265345-4	chr13	47264859	47265859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71356.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-40531630-4	chr3	40531164	40532164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-8752.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6243581-2	chr19	6243081	6244081	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194348, intron 1 of 39)	intron (NM_194348, intron 1 of 39)	1913.0	NM_194348	329015.0	Mm.277384	NM_194348	ENSMUSG00000024773	Atg2a	1810013C15Rik|A830054M12|BC023754|mKIAA0404	autophagy related 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155486857-2	chr4	155486357	155487357	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4504.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101228142-1	chr7	101227642	101228642	+	1000.0	f1_balb.idr	intron (NM_199012, intron 8 of 20)	intron (NM_199012, intron 8 of 20)	73946.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	1.5	2.0	1.5	0.0	11.5	2.0
Merged-chr16-24103063-4	chr16	24102569	24103569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20379.0	NR_155457	108168278.0	Mm.417246	NR_155457		Gm46545	-	predicted gene, 46545	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-46710607-4	chr7	46710087	46711087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030233)	promoter-TSS (NM_030233)	64.0	NM_030233	78935.0	Mm.289866	NM_030233	ENSMUSG00000006763	Saal1	5031425D22Rik|SPACIA1	serum amyloid A-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4253136-4	chr8	4252613	4253613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133968)	promoter-TSS (NM_133968)	11.0	NM_133968	102209.0	Mm.28452	NM_133968	ENSMUSG00000011837	Snapc2	0610007H10Rik|AU015675	small nuclear RNA activating complex, polypeptide 2	protein-coding	6.5	18.0	12.5	6.0	19.0	13.0
Merged-chr1-159198791-4	chr1	159198326	159199326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-33374.0	NM_001360878	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	5.5	8.5	16.0	5.5	26.5	6.0
Merged-chr10-117793961-2	chr10	117793461	117794461	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1256.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-83568313-4	chr9	83567814	83568814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	19976.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	2.5	11.0	9.5	1.0	0.5	6.5
Merged-chr17-48409045-4	chr17	48408554	48409554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357903)	promoter-TSS (NM_001357903)	766.0	NM_001110832	18044.0	Mm.4929	NM_010913	ENSMUSG00000023994	Nfya	AA407810|Cbf-b|SEZ-10|SEZ10	nuclear transcription factor-Y alpha	protein-coding	60.0	153.0	129.5	76.0	163.5	121.5
Merged-chr12-73876546-4	chr12	73876033	73877033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-24791.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63392510-2	chr4	63392010	63393010	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 3 of 21)	intron (NM_001045514, intron 3 of 21)	5730.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140731246-4	chr5	140730730	140731730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	intron (NM_173405, intron 2 of 7)	7103.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-43368663-4	chr11	43368104	43369104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5857.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-65090586-4	chr1	65090156	65091156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER31B|LTR|ERV1	-8366.0	NM_144761	12965.0	Mm.440053	NM_144761	ENSMUSG00000073658	Crygb	Cryg-3|DGcry-3|Nop	crystallin, gamma B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81783774-4	chr13	81783289	81784289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007684, intron 1 of 4)	CpG	542.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95310340-4	chr11	95309852	95310852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195004)	promoter-TSS (NM_001195004)	-64.0	NR_155298	102640811.0	Mm.440938	NR_155298		Gm11520	-	predicted gene 11520	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20640962-4	chr14	20640462	20641462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	15578.0	NM_021508	59011.0	Mm.439911	NM_021508	ENSMUSG00000068697	Myoz1	2310001N11Rik|AV090278|FATZ|Myoz	myozenin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25284523-2	chr7	25284023	25285023	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027882, intron 1 of 19)	intron (NM_027882, intron 1 of 19)	2344.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56699197-4	chr18	56698697	56699697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8616.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114568928-6	chr11	114568409	114569409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-99634.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111343370-4	chr8	111342863	111343863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5158.0	NM_029005	74568.0	Mm.207971	NM_029005	ENSMUSG00000012519	Mlkl	9130019I15Rik	mixed lineage kinase domain-like	protein-coding	16.0	29.5	10.5	11.0	22.0	8.5
Merged-chr3-52105041-4	chr3	52104538	52105538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004176)	promoter-TSS (NM_001004176)	-32.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94524795-2	chr16	94524295	94525295	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 1 of 7)	intron (NM_007834, intron 1 of 7)	1834.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-14869968-4	chr3	14869466	14870466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007606, intron 5 of 6)	intron (NM_007606, intron 5 of 6)	6428.0	NM_007606	12350.0	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	21.5	19.5	10.5	5.0	16.5	10.0
Merged-chr18-81571755-4	chr18	81571249	81572249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	420331.0	NR_039589	100628596.0		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-63024003-4	chr10	63023511	63024511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001079824)	promoter-TSS (NM_001079824)	-162.0	NM_001079824	432467.0	Mm.274784	NM_001079824	ENSMUSG00000020069	Hnrnph3	AA693301|AI666703|Hnrph3	heterogeneous nuclear ribonucleoprotein H3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8639819-2	chr11	8639319	8640319	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	24716.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	2.0	1.0	0.0	0.0	0.0	0.5
Merged-chr11-100472801-4	chr11	100472297	100473297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172565)	promoter-TSS (NM_172565)	-15.0	NM_172565	217194.0	Mm.183320	NM_172565	ENSMUSG00000048732	Klhl11	BC011167	kelch-like 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-151533823-4	chr2	151533318	151534318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-8665.0	NR_126058	14225.0	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45653173-4	chr2	45652687	45653687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-43418.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89177377-4	chr3	89176841	89177841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001309909)	promoter-TSS (NM_001309909)	-50.0	NM_001309910	24045.0	Mm.257052	NM_011886	ENSMUSG00000028049	Scamp3	Sc3	secretory carrier membrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112605959-2	chr12	112605459	112606459	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198411, intron 10 of 22)	intron (NM_198411, intron 10 of 22)	-14088.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167634598-4	chr2	167634101	167635101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2596.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28387225-2	chr7	28386725	28387725	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026042, intron 3 of 3)	B1_Mus1|SINE|Alu	5465.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-18717312-4	chr13	18716813	18717813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172120)	promoter-TSS (NM_172120)	21.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	35.5	107.5	132.5	38.5	106.0	92.0
Merged-chr11-60913804-4	chr11	60913299	60914299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025294)	promoter-TSS (NM_025294)	-7.0	NM_025294	24083.0	Mm.22780	NM_025294	ENSMUSG00000018931	Natd1	AI256713|F3-2|Gm16515|Gtlf3b	N-acetyltransferase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-57541137-4	chr8	57540627	57541627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 6 of 11)	intron (NM_001167981, intron 6 of 11)	29284.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19184993-2	chr10	19184493	19185493	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038022, intron 1 of 1)	intron (NR_038022, intron 1 of 1)	17755.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65551349-4	chr3	65550851	65551851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178892, intron 4 of 5)	intron (NM_178892, intron 4 of 5)	-21937.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	5.0	5.0	17.0	4.0	1.0	10.0
Merged-chr18-70648605-2	chr18	70648105	70649105	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	80313.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141465842-2	chr7	141465342	141466342	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025103, intron 9 of 9)	intron (NM_001025103, intron 9 of 9)	-1520.0	NM_009842	12476.0	Mm.30246	NM_009842	ENSMUSG00000025510	Cd151	PETA-3|SFA-1|Tspan24	CD151 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95651435-4	chr3	95650940	95651940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7281.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	6.0	10.5	7.5	2.5	27.0	13.0
Merged-chr5-33938637-4	chr5	33938098	33939098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-2340.0	NM_011914	24116.0	Mm.332320	NM_011914	ENSMUSG00000029111	Nelfa	Whsc2|Whsc2h	negative elongation factor complex member A, Whsc2	protein-coding	3.0	5.5	0.0	3.0	0.0	2.5
Merged-chr4-43041016-2	chr4	43040516	43041516	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253353)	promoter-TSS (NM_001253353)	-715.0	NM_001253354	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	22.0	20.5	22.0	2.5	31.0	26.0
Merged-chr19-10835111-2	chr19	10834611	10835611	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-5053.0	NM_009852	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83350203-4	chr15	83349704	83350704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025445)	promoter-TSS (NM_025445)	43.0	NM_001357756	66251.0	Mm.258910	NM_025445	ENSMUSG00000054277	Arfgap3	0610009H19Rik|1810004P07Rik|1810035F16Rik|9130416J18Rik|Arfgap1	ADP-ribosylation factor GTPase activating protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20108107-4	chr13	20107600	20108600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	17593.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	33.0	49.0	34.0	37.0	80.5	31.5
Merged-chr9-74953451-3	chr9	74952958	74953958	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113283, intron 1 of 12)	intron (NM_001113283, intron 1 of 12)	405.0	NM_001113283	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	63.5	125.0	100.5	57.0	89.0	69.0
Merged-chr8-117444361-2	chr8	117443861	117444861	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 10 of 20)	(TG)n|Simple_repeat|Simple_repeat	-8662.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-125390198-4	chr10	125389690	125390690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61227.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	6.5	50.5	26.5	5.5	35.0	18.0
Merged-chr4-155150719-4	chr4	155150228	155151228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	64124.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	5.0	12.5	14.0	3.0	3.5	6.5
Merged-chr8-117802057-4	chr8	117801534	117802534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026758)	promoter-TSS (NM_026758)	-60.0	NM_001357232	68533.0	Mm.181836	NM_026758	ENSMUSG00000031843	Mphosph6	1110001M01Rik|AA536809|C86426	M phase phosphoprotein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118981281-3	chr10	118980779	118981779	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-54136.0	NR_110482	216377.0	Mm.208936	NR_110482	ENSMUSG00000112854	Gm38403	C230029M16	predicted gene, 38403	ncRNA	0.5	14.5	19.0	4.5	7.5	8.0
Merged-chr15-98533966-4	chr15	98533463	98534463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153345, exon 1 of 11)	non-coding (NR_153345, exon 1 of 11)	306.0	NM_001359827	69612.0	Mm.229107	NM_133714	ENSMUSG00000022992	Kansl2	2310037I24Rik|B930009D17	KAT8 regulatory NSL complex subunit 2	protein-coding	12.5	66.0	36.0	10.5	62.0	46.0
Merged-chr17-71552011-4	chr17	71551494	71552494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142631)	promoter-TSS (NM_001142631)	-67.0	NM_001142631	70891.0	Mm.477599	NM_029254	ENSMUSG00000052525	Spdya	4921517J08Rik|4930548B21Rik|GS4|MLZ-465|Spdy1	speedy/RINGO cell cycle regulator family, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-144100336-4	chr5	144099849	144100849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081109)	promoter-TSS (NM_001081109)	-87.0	NM_001081109	231876.0	Mm.288726	NM_001081109	ENSMUSG00000038970	Lmtk2	2900041G10Rik|A330101P12Rik|BREK|KPI-2|KPI2|aatyk2|cprk	lemur tyrosine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-84597775-4	chr11	84597271	84598271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72111.0	NR_038057	78365.0	Mm.260345	NR_038057	ENSMUSG00000087211	Lhx1os	1500016L03Rik|Lhx1as	LIM homeobox 1, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57424566-2	chr17	57424066	57425066	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 12 of 22)	L1Md_F2|LINE|L1	65880.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181497710-4	chr2	181497163	181498163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111899, intron 1 of 5)	intron (NR_111899, intron 1 of 5)	521.0	NM_001291204	66314.0	Mm.136648	NM_025482	ENSMUSG00000000827	Tpd52l2	2810411G23Rik|AU016537|C86069|D54	tumor protein D52-like 2	protein-coding	101.0	246.5	166.5	146.0	249.0	212.5
Merged-chr6-52842763-4	chr6	52842261	52843261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 2 of 4)	MTC|LTR|ERVL-MaLR	66859.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-114934712-1	chr9	114934212	114935212	+	1000.0	f1_balb.idr	promoter-TSS (NM_175380)	promoter-TSS (NM_175380)	-725.0	NM_175380	333433.0	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	10.5	7.5	12.5	9.5	10.0	7.5
Merged-chr1-36262302-4	chr1	36261813	36262813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	11112.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-144249153-4	chr1	144248670	144249670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015811)	promoter-TSS (NM_015811)	-66.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	16.5	19.0	18.0	17.0	19.5	19.0
Merged-chr11-69680541-2	chr11	69680041	69681041	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163571, exon 2 of 11)	exon (NM_001163571, exon 2 of 11)	1429.0	NM_030702	80886.0	Mm.284592	NM_030702	ENSMUSG00000005204	Senp3	AA408656|Smt3ip|Smt3ip1	SUMO/sentrin specific peptidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-60974149-4	chr1	60973651	60974651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3763.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	26.0	44.5	43.5	19.0	65.0	46.5
Merged-chr10-80258117-2	chr10	80257617	80258617	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347119)	TTS (NM_001347119)	2895.0	NM_001347119	14431.0	Mm.7329	NM_010255	ENSMUSG00000020150	Gamt	AA571402|Spintz1	guanidinoacetate methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60835342-4	chr11	60834834	60835834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172112, intron 1 of 6)	ORR1C1|LTR|ERVL-MaLR	4703.0	NM_145428	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-101604112-4	chr3	101603620	101604620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144900, intron 1 of 22)	CpG	587.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154160789-4	chr4	154160295	154161295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026388)	promoter-TSS (NM_026388)	-111.0	NM_026388	67808.0	Mm.288737	NM_026388	ENSMUSG00000029030	Tprgl	1200015A19Rik|Svap30|Tprg1l|mover	transformation related protein 63 regulated like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145017928-3	chr4	145017419	145018419	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 66 of 69)	intron (NM_001276465, intron 66 of 69)	124782.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101658921-2	chr11	101658421	101659421	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6620.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105996500-4	chr8	105995981	105996981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176913)	promoter-TSS (NM_176913)	-58.0	NM_176913	319446.0	Mm.248357	NM_176913	ENSMUSG00000053687	Dpep2	F630103D06Rik|MBD-2	dipeptidase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-157535108-4	chr3	157534590	157535590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152231)	promoter-TSS (NR_152231)	925.0	NM_001355386	53861.0	Mm.259036	NM_017381	ENSMUSG00000028180	Zranb2	AI227013|Zfp265|Zis|Znf265	zinc finger, RAN-binding domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112675459-4	chr12	112674963	112675963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331107)	promoter-TSS (NM_001331107)	-579.0	NM_001331107	11651.0	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120662085-2	chr8	120661585	120662585	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010926, intron 1 of 4)	B1_Mm|SINE|Alu	6027.0	NM_010926	18117.0	Mm.2136	NM_010926	ENSMUSG00000031819	Emc8	Cox4nb|Fam158b|Noc4	ER membrane protein complex subunit 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-69143227-4	chr17	69142737	69143737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355732, intron 1 of 21)	intron (NM_001355732, intron 1 of 21)	-13507.0	NM_013813	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19269796-5	chr7	19269184	19270184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009499, intron 1 of 12)	intron (NM_009499, intron 1 of 12)	2170.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	48.0	154.5	59.0	50.5	164.5	79.0
Merged-chr2-157338859-2	chr2	157338359	157339359	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010285, intron 1 of 4)	B3|SINE|B2	-1433.0	NM_001329683	14601.0	Mm.389327	NM_010285	ENSMUSG00000027643	Ghrh	GRF|Ghrf	growth hormone releasing hormone	protein-coding	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr2-34772550-4	chr2	34772029	34773029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163434, intron 2 of 8)	CpG	439.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-70097657-2	chr10	70097157	70098157	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111121, intron 1 of 8)	CpG	536.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40821786-4	chr4	40821270	40822270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022305, intron 2 of 5)	intron (NM_022305, intron 2 of 5)	28368.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7494906-1	chr19	7494406	7495406	+	1000.0	f0_c57.idr	intron (NM_146091, intron 1 of 12)	CpG	468.0	NM_146091	109168.0	Mm.264016	NM_146091	ENSMUSG00000024759	Atl3	4633402C03Rik|5730596K20Rik|AI465397|AW228836	atlastin GTPase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-113327692-4	chr2	113327215	113328215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285458)	promoter-TSS (NM_001285458)	-21.0	NM_001285458	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	13.0	5.0	6.5	9.0	11.5	10.0
Merged-chr10-127056310-2	chr10	127055810	127056810	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033262, exon 4 of 4)	3' UTR (NM_001033262, exon 4 of 4)	3874.0	NM_001033262	216438.0	Mm.37892	NM_001033262	ENSMUSG00000040502	March9	AI608492|BC019560	membrane-associated ring finger (C3HC4) 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133874702-4	chr4	133874204	133875204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285506)	promoter-TSS (NM_001285506)	27.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	23.0	26.5	24.5	49.0	50.5	30.0
Merged-chr9-44268650-4	chr9	44268131	44269131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163743)	promoter-TSS (NM_001163743)	-32.0	NM_001163742	270151.0	Mm.3957	NM_178420	ENSMUSG00000032109	Nlrx1	BC034204|NOD9	NLR family member X1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45813966-4	chr7	45813465	45814465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011181, intron 1 of 11)	CpG	351.0	NM_011181	19158.0	Mm.272130	NM_011181	ENSMUSG00000003269	Cyth2	ARNO|CLM2|Pscd2	cytohesin 2	protein-coding	0.5	11.0	10.0	1.0	11.0	8.0
Merged-chr9-65539619-2	chr9	65539119	65540119	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	40468.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70668905-4	chr11	70668402	70669402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178116)	TTS (NM_178116)	514.0	NM_172561	216873.0	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-72690362-3	chr11	72689861	72690861	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009671, intron 1 of 24)	intron (NM_009671, intron 1 of 24)	359.0	NM_009671	11736.0	Mm.10313	NM_009671	ENSMUSG00000020790	Ankfy1	Ankhzn|ZFYVE14|mKIAA1255	ankyrin repeat and FYVE domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27746263-2	chr15	27745763	27746763	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 48 of 56)	intron (NM_001081302, intron 48 of 56)	-64721.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85486139-4	chr12	85485650	85486650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	12260.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-115830727-4	chr4	115830235	115831235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175308, intron 1 of 3)	intron (NM_175308, intron 1 of 3)	2643.0	NM_175308	100465.0	Mm.35571	NM_175308	ENSMUSG00000028709	Mob3c	AW822253|D130076I06Rik|Mobkl2c	MOB kinase activator 3C	protein-coding	10.0	51.5	18.5	15.5	22.5	19.0
Merged-chr15-89427358-4	chr15	89426857	89427857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_004843, exon 8 of 27)	non-coding (NR_004843, exon 8 of 27)	-1495.0	NM_009948	12895.0	Mm.227738	NM_009948	ENSMUSG00000078937	Cpt1b	Cpt1|Cpt1-m|Cpti|Cpti-m|M-cpti	carnitine palmitoyltransferase 1b, muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120532825-2	chr5	120532325	120533325	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177594, intron 14 of 14)	intron (NM_001177594, intron 14 of 14)	21633.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80139663-2	chr12	80139163	80140163	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6819.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4567807-4	chr2	4567311	4568311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 2 of 11)	intron (NM_001177844, intron 2 of 11)	8057.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-88828500-4	chr13	88828014	88829014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037987, intron 1 of 10)	intron (NM_001037987, intron 1 of 10)	7042.0	NM_001037987	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-13871152-4	chr6	13870671	13871671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045995)	promoter-TSS (NR_045995)	347.0	NM_001352887	66520.0	Mm.29615	NM_183258		2610001J05Rik	C79299	RIKEN cDNA 2610001J05 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74375553-1	chr1	74375053	74376053	+	1000.0	f0_balb.idr	intron (NM_013612, intron 1 of 14)	intron (NM_013612, intron 1 of 14)	350.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-6490817-4	chr18	6490324	6491324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276350)	promoter-TSS (NM_001276350)	33.0	NM_027497	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	3.0	4.5	0.0	2.0	0.0	0.0
Merged-chr4-102658754-4	chr4	102658245	102659245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68902.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	1.0	31.0	7.5	5.5	44.0	7.0
Merged-chr2-48949329-4	chr2	48948820	48949820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177313)	promoter-TSS (NM_001177313)	-53.0	NR_149356	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127208245-4	chr2	127207717	127208717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198630)	promoter-TSS (NM_198630)	63.0	NM_198630	329509.0	Mm.120738	NM_198630	ENSMUSG00000044145	1810024B03Rik	-	RIKEN cDNA 1810024B03 gene	protein-coding	78.5	175.0	100.0	87.5	149.0	133.0
Merged-chr12-91764495-4	chr12	91763996	91764996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	21940.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118249381-2	chr11	118248881	118249881	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001112699)	promoter-TSS (NM_001112699)	-789.0	NM_011180	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-53287267-4	chr6	53286777	53287777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001327821)	promoter-TSS (NM_001327821)	-26.0	NM_001327821	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-59639252-4	chr16	59638764	59639764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019665)	promoter-TSS (NM_019665)	75.0	NM_019665	56297.0	Mm.392505	NM_019665	ENSMUSG00000022722	Arl6	1110018H24Rik|2210411E14Rik|BBS3	ADP-ribosylation factor-like 6	protein-coding	37.5	87.5	54.0	22.0	59.5	58.5
Merged-chr4-59575337-3	chr4	59574867	59575867	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	-6196.0	NM_001301367	72479.0	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97442170-4	chr6	97441676	97442676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	URR1A|DNA|hAT-Charlie	17110.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128666589-4	chr4	128666085	128667085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	11883.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92826111-4	chr16	92825642	92826642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111021)	promoter-TSS (NM_001111021)	-68.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16311018-7	chr7	16310513	16311513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133234, intron 1 of 3)	intron (NM_133234, intron 1 of 3)	1430.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	4.5	12.0	8.0	5.0	12.0	8.0
Merged-chr13-119836671-4	chr13	119836166	119837166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6449.0	NM_001001449	380878.0	Mm.327311	NM_001001449	ENSMUSG00000094237	AF067063	-	cDNA sequence AF067063	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5488024-3	chr19	5487529	5488529	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153768, exon 1 of 16)	non-coding (NR_153768, exon 1 of 16)	350.0	NM_027877	71711.0	Mm.27697	NM_027877	ENSMUSG00000024906	Mus81	1200008A18Rik|AI182501|AW045863	MUS81 structure-specific endonuclease subunit	protein-coding	7.0	24.5	10.0	7.0	24.0	10.0
Merged-chr10-108185437-4	chr10	108184935	108185935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027892, intron 1 of 25)	intron (NM_027892, intron 1 of 25)	23035.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71183451-4	chr17	71182925	71183925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022882)	promoter-TSS (NM_022882)	-107.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12204369-2	chr15	12203869	12204869	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172958)	promoter-TSS (NM_172958)	-659.0	NM_001356498	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-104425254-4	chr11	104424764	104425764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081045, exon 2 of 14)	5' UTR (NM_001081045, exon 2 of 14)	17027.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139830856-4	chr5	139830351	139831351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-3957.0	NM_025604	66506.0	Mm.29070	NM_025604	ENSMUSG00000029551	Psmg3	1810042K04Rik|4930403H09Rik|AI303239	proteasome (prosome, macropain) assembly chaperone 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44513280-4	chr9	44512784	44513784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007551, exon 2 of 2)	exon (NM_007551, exon 2 of 2)	13137.0	NM_007551	12145.0	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	17.5	38.0	13.0	8.5	22.0	7.0
Merged-chr2-59960322-4	chr2	59959821	59960821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 9 of 35)	intron (NM_001001182, intron 9 of 35)	-77715.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46845154-4	chr8	46844637	46845637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 7 of 7)	intron (NR_152560, intron 7 of 7)	105392.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-33658554-4	chr5	33658118	33659118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356983)	promoter-TSS (NM_001356983)	490.0	NM_001040435	21335.0	Mm.379024	NM_011524	ENSMUSG00000037313	Tacc3	Aint|C86661|Eric1	transforming, acidic coiled-coil containing protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-115689609-4	chr3	115689109	115690109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25446.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	115.5	147.5	81.5	23.0	79.5	47.0
Merged-chr13-111980442-4	chr13	111979939	111980939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112503.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	9.0	18.0	6.5	11.5	22.5	29.5
Merged-chr10-80656593-4	chr10	80656105	80657105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145361, exon 1 of 9)	5' UTR (NM_145361, exon 1 of 9)	466.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-30693807-4	chr6	30693319	30694319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031998)	promoter-TSS (NM_031998)	-70.0	NR_130775	83922.0	Mm.65389	NM_031998	ENSMUSG00000029790	Cep41	1700017E11Rik|2810431D15Rik|Tsga14	centrosomal protein 41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97659667-4	chr11	97659175	97660175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3737.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	164.5	374.0	315.5	163.5	377.0	315.0
Merged-chr9-120116233-4	chr9	120115737	120116737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144793, intron 1 of 6)	intron (NM_144793, intron 1 of 6)	5838.0	NM_144793	208638.0	Mm.236656	NM_144793	ENSMUSG00000032519	Slc25a38	AV019094|BC010801|appoptosin	solute carrier family 25, member 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46383593-4	chr17	46383090	46384090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207671)	promoter-TSS (NM_207671)	-176.0	NM_207671	57908.0	Mm.439916	NM_021346	ENSMUSG00000015597	Zfp318	2610034E08Rik|D530032D06Rik|TZF|Znf318	zinc finger protein 318	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-138846666-4	chr7	138846208	138847208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027115)	promoter-TSS (NM_027115)	322.0	NM_026391	52432.0	Mm.258739	NM_026391	ENSMUSG00000041769	Ppp2r2d	1300017E19Rik|D7Ertd753e|MDS026	protein phosphatase 2, regulatory subunit B, delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92465650-4	chr5	92465158	92466158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 2 of 11)	intron (NM_007644, intron 2 of 11)	7101.0	NR_105843	102466159.0		NR_105843	ENSMUSG00000099160	Mir6415	Gm27714|mmu-mir-6415	microRNA 6415	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-9161722-4	chr5	9161228	9162228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011806)	promoter-TSS (NM_011806)	48.0	NR_152860	23857.0	Mm.22480	NM_011806	ENSMUSG00000042508	Dmtf1	Dimp|Dmp1	cyclin D binding myb-like transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69062275-2	chr11	69061775	69062775	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028005)	TTS (NM_028005)	2500.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-13690575-4	chr6	13690077	13691077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12611.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61579660-4	chr11	61579093	61580093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010148)	promoter-TSS (NM_010148)	94.0	NM_010148	13855.0	Mm.139695	NM_010148	ENSMUSG00000001036	Epn2	9530051D10Rik|AA536924|Ibp2	epsin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84220310-4	chr8	84219805	84220805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172503, intron 10 of 13)	intron (NM_172503, intron 10 of 13)	-11398.0	NR_037294	100526528.0		NR_037294	ENSMUSG00000105458	Mir3074-2	mir-3074-2|mmu-mir-3074-2	microRNA 3074-2	ncRNA	27.5	84.0	51.0	25.0	82.0	42.5
Merged-chr10-127120648-2	chr10	127120148	127121148	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177614, intron 1 of 13)	intron (NM_177614, intron 1 of 13)	512.0	NM_177614	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29210163-4	chr19	29209663	29210663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41640.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155086452-4	chr4	155085947	155086947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026395)	promoter-TSS (NM_026395)	-130.0	NM_001081100	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	2.5	37.5	25.5	2.5	38.5	24.5
Merged-chr10-37137153-4	chr10	37136661	37137661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008538, intron 1 of 1)	CpG	1765.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21540276-4	chr11	21539757	21540757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-29077.0	NR_028259	237694.0	Mm.72926	NM_172792	ENSMUSG00000078962	4932414J04Rik	-	RIKEN cDNA 4932414J04 gene	ncRNA	1.5	7.5	2.0	1.5	7.5	2.0
Merged-chr4-123572137-4	chr4	123571643	123572643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-44277.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	5.5	27.5	22.5	18.0	22.0	27.0
Merged-chr19-25074994-4	chr19	25074498	25075498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 4 of 47)	intron (NM_028785, intron 4 of 47)	75469.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148940773-4	chr4	148940260	148941260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027195, intron 11 of 15)	intron (NM_027195, intron 11 of 15)	11562.0	NR_154553	108168987.0	Mm.393596	NR_154553		Gm13205	AA408865	predicted gene 13205	ncRNA	25.5	59.5	47.5	21.0	62.0	33.0
Merged-chr13-5778391-4	chr13	5777937	5778937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	79655.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80083451-4	chr15	80082957	80083957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013762)	promoter-TSS (NM_013762)	-51.0	NM_013762	27367.0	Mm.290771	NM_013762	ENSMUSG00000060036	Rpl3	F2|J1	ribosomal protein L3	protein-coding	50.0	155.0	162.0	66.0	208.0	168.5
Merged-chr11-117824732-4	chr11	117824241	117825241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009387, exon 3 of 7)	exon (NM_009387, exon 3 of 7)	-1178.0	NM_027827	71562.0	Mm.273958	NM_027827	ENSMUSG00000017718	Afmid	9030621K19Rik|Ammd|FKF|KFA|Kf|formylase	arylformamidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117550282-4	chr4	117549783	117550783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080469)	promoter-TSS (NM_080469)	-41.0	NM_001356404	140546.0	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-24831099-2	chr12	24830507	24831507	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083341)	promoter-TSS (NM_001083341)	-592.0	NM_026037	67216.0	Mm.167671	NM_026037	ENSMUSG00000020646	Mboat2	2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2	membrane bound O-acyltransferase domain containing 2	protein-coding	0.0	2.5	3.0	0.0	1.0	2.5
Merged-chr12-86836878-4	chr12	86836370	86837370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47944.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106060022-2	chr8	106059529	106060529	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_010901, intron 1 of 9)	CpG	426.0	NM_010901	18021.0	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152528943-4	chr1	152528456	152529456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 14 of 17)	L1MEd|LINE|L1	96261.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-48689283-4	chr2	48688783	48689783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124826.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78428369-4	chr9	78427865	78428865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14872.0	NR_125721	214763.0	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54991289-4	chr18	54990772	54991772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 1 of 8)	intron (NM_001360787, intron 1 of 8)	-1092.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118706351-4	chr9	118705845	118706845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 15 of 27)	intron (NM_133721, intron 15 of 27)	-5347.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	88.5	208.5	179.5	77.0	189.0	135.5
Merged-chr13-23431541-4	chr13	23431061	23432061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015492)	promoter-TSS (NR_015492)	-544.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106577379-4	chr8	106576883	106577883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9760.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-140856383-4	chr7	140855902	140856902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018742)	promoter-TSS (NM_018742)	-19.0	NM_018742	54399.0	Mm.155696	NM_018742	ENSMUSG00000025484	Bet1l	2610021K23Rik|Gs15	Bet1 golgi vesicular membrane trafficking protein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44418091-4	chr9	44417603	44418603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201372)	promoter-TSS (NM_201372)	-34.0	NM_201372	382073.0	Mm.259573	NM_201372	ENSMUSG00000043923	Ccdc84	D630044F24Rik|Gm1114	coiled-coil domain containing 84	protein-coding	0.0	2.0	4.5	6.5	6.0	4.0
Merged-chr13-23555609-2	chr13	23555109	23556109	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145713, exon 1 of 1)	exon (NM_145713, exon 1 of 1)	577.0	NM_145713	14957.0	Mm.247046	NM_145713	ENSMUSG00000052565	Hist1h1d	H1.3|H1D|H1f3|H1s-4	histone cluster 1, H1d	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129742417-4	chr4	129741932	129742932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045036)	promoter-TSS (NR_045036)	-129.0	NR_045036	20218.0	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	75.0	262.0	244.0	72.0	230.0	186.5
Merged-chr11-117939889-4	chr11	117939379	117940379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29487.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-90235417-4	chr11	90234919	90235919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14057.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-58323399-4	chr10	58322900	58323900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359115)	promoter-TSS (NM_001359115)	-147.0	NM_001359115	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108783045-4	chr6	108782530	108783530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026011)	promoter-TSS (NM_026011)	-29.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	34.5	130.5	136.0	39.0	126.0	118.0
Merged-chr7-5014356-4	chr7	5013889	5014889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011813)	promoter-TSS (NM_011813)	-136.0	NM_001360242	23877.0	Mm.38911	NM_011813	ENSMUSG00000061374	Fiz1	AI790204|mFLJ00416	Flt3 interacting zinc finger protein 1	protein-coding	13.5	27.0	17.5	7.5	23.0	15.0
Merged-chr1-105965399-4	chr1	105964904	105965904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24878.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	97.5	408.0	254.0	171.0	456.5	300.0
Merged-chr10-128259108-4	chr10	128258613	128259613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	4982.0	NM_133996	28194.0	Mm.439846	NM_133996	ENSMUSG00000051716	Apon	AI195275|D10Ucla2	apolipoprotein N	protein-coding	10.5	10.5	16.0	2.5	0.0	4.5
Merged-chr2-49417187-4	chr2	49416698	49417698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34288.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-122860210-4	chr4	122859721	122860721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007598, intron 12 of 12)	intron (NM_007598, intron 12 of 12)	23994.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	7.5	14.0	7.5	5.5	9.0	9.5
Merged-chr8-70610865-4	chr8	70610377	70611377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2563.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	138.5	311.0	152.5	158.0	399.5	241.5
Merged-chr14-17743857-4	chr14	17743346	17744346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 1 of 9)	intron (NM_001113417, intron 1 of 9)	82886.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55570523-2	chr13	55570022	55571022	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145382, exon 1 of 11)	5' UTR (NM_145382, exon 1 of 11)	598.0	NM_145382	212483.0	Mm.35661	NM_145382	ENSMUSG00000021495	Fam193b	IRIZIO|Kiaa1931	family with sequence similarity 193, member B	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr18-35562635-4	chr18	35562121	35563121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010771, intron 1 of 14)	CpG	463.0	NM_010771	17184.0	Mm.215034	NM_010771	ENSMUSG00000037236	Matr3	1110061A14Rik|2810017I02Rik|AI841759|AW555618|D030046F20Rik|mKIAA0723	matrin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103797428-7	chr2	103796945	103797945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111290)	promoter-TSS (NM_001111290)	195.0	NM_001111291	53872.0	Mm.427589	NM_016739	ENSMUSG00000027184	Caprin1	AL022980|Caprin-1|Gpiap|Gpiap1|Mmgpip137|P137|rng105	cell cycle associated protein 1	protein-coding	74.5	142.0	104.5	70.0	174.5	118.0
Merged-chr14-52244571-4	chr14	52244061	52245061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6989.0	NM_201637	67772.0	Mm.289934	NM_201637	ENSMUSG00000053754	Chd8	5830451P18Rik|AU015341|Duplin|HELSNF1|mKIAA1564	chromodomain helicase DNA binding protein 8	protein-coding	22.0	22.5	37.5	16.0	30.0	12.5
Merged-chr18-14682289-4	chr18	14681832	14682832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009280, intron 1 of 10)	CpG	582.0	NM_001161369	268996.0	Mm.31761	NM_009280	ENSMUSG00000037013	Ss18	D130059H17|Ssxt|Syt	SS18, nBAF chromatin remodeling complex subunit	protein-coding	2.5	7.5	16.5	2.0	0.0	6.0
Merged-chr5-121836433-4	chr5	121835938	121836938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001306126)	promoter-TSS (NM_001306126)	-334.0	NM_001306126	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79988653-2	chr10	79988153	79989153	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007725)	promoter-TSS (NM_007725)	53.0	NM_007725	12798.0	Mm.157770	NM_007725	ENSMUSG00000004665	Cnn2	AA408047|AI324678|Calpo2	calponin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87987065-4	chr3	87986568	87987568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007529)	TTS (NM_007529)	13288.0	NM_007529	12032.0	Mm.4598	NM_007529	ENSMUSG00000004892	Bcan	Cspg7	brevican	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143817716-4	chr5	143817218	143818218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-54144.0	NM_013557	15467.0	Mm.389709	NM_013557	ENSMUSG00000029613	Eif2ak1	HCR|Hri	eukaryotic translation initiation factor 2 alpha kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141953046-4	chr4	141952546	141953546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 12 of 31)	MER2|DNA|TcMar-Tigger	-29946.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69538701-4	chr12	69538204	69539204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44324.0	NM_001033236	207965.0	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	5.0	5.5	3.0	1.0	4.0	6.0
Merged-chr14-50834182-4	chr14	50833694	50834694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009351, intron 41 of 54)	intron (NM_009351, intron 41 of 54)	26278.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	81.5	195.5	142.0	84.0	191.5	131.5
Merged-chr18-61481866-4	chr18	61481373	61482373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045419, intron 1 of 3)	MLT1K|LTR|ERVL-MaLR	2734.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	41.0	88.5	71.0	47.0	137.0	77.0
Merged-chr16-57336903-4	chr16	57336410	57337410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025599, intron 1 of 9)	intron (NM_025599, intron 1 of 9)	-16367.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	12.0	25.0	20.5	8.0	37.5	19.0
Merged-chr1-171123109-4	chr1	171122621	171123621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081275, exon 2 of 6)	5' UTR (NM_001081275, exon 2 of 6)	1460.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39145375-4	chr18	39144866	39145866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 10 of 21)	intron (NM_001361073, intron 10 of 21)	152221.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	5.0	5.5	11.0	0.5	2.0	2.5
Merged-chr8-83738907-2	chr8	83738380	83739380	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 1 of 19)	B1_Mur2|SINE|Alu	2431.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	152.5	446.0	265.5	166.0	391.5	213.5
Merged-chr13-64154129-4	chr13	64153614	64154614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175494)	promoter-TSS (NM_175494)	-915.0	NM_175494	238673.0	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	33.0	79.5	74.5	26.5	44.5	41.0
Merged-chr11-6476139-4	chr11	6475645	6476645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011221)	promoter-TSS (NM_011221)	-69.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	101.0	219.5	93.5	51.0	162.5	122.0
Merged-chr3-101600426-4	chr3	101599921	101600921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	4286.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139490918-4	chr4	139490427	139491427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39621.0	NM_183148	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	39.5	28.5	56.5	19.0	42.5	30.5
Merged-chr3-27690289-4	chr3	27689798	27690798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 1 of 26)	intron (NM_001356953, intron 1 of 26)	20154.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57325559-2	chr17	57325059	57326059	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 25 of 25)	MTC|LTR|ERVL-MaLR	-33127.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71981582-4	chr6	71981060	71982060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60968.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122935047-4	chr6	122934556	122935556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_199311)	TTS (NM_199311)	13208.0	NM_199311	269799.0	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94603284-2	chr16	94602784	94603784	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-8135.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52998110-4	chr2	52997621	52998621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	140253.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98027045-4	chr11	98026565	98027565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009078, intron 1 of 5)	CpG	141.0	NM_009078	19921.0	Mm.10247	NM_009078	ENSMUSG00000017404	Rpl19	-	ribosomal protein L19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44478645-4	chr11	44478170	44479170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER68|LTR|ERVL	-8122.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117342279-4	chr2	117341756	117342756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 1 of 16)	intron (NM_011246, intron 1 of 16)	621.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54668728-3	chr18	54668236	54669236	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56992.0	NR_045400	328957.0	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA	2.0	7.5	7.0	12.0	17.0	10.5
Merged-chr17-25184518-4	chr17	25184025	25185025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183150)	promoter-TSS (NM_183150)	-36.0	NM_183150	214489.0	Mm.274433	NM_183150	ENSMUSG00000067722	BC003965	Ccsmst1	cDNA sequence BC003965	protein-coding	37.0	163.0	143.0	67.5	186.0	100.0
Merged-chr3-96572127-4	chr3	96571626	96572626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5325.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	16.0	28.0	22.5	19.0	36.5	32.5
Merged-chr10-7955908-3	chr10	7955399	7956399	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_138667, exon 1 of 7)	5' UTR (NM_138667, exon 1 of 7)	224.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35151039-4	chr7	35150562	35151562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31769.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	3.5	39.0	22.0	10.0	15.5	20.0
Merged-chr2-114233298-4	chr2	114232797	114233797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31865.0	NM_175466	228491.0	Mm.132523	NM_175466	ENSMUSG00000040321	Zfp770	6430601A21Rik|Znf770	zinc finger protein 770	protein-coding	4.5	5.5	10.5	1.0	6.0	3.0
Merged-chr15-38662530-3	chr15	38661975	38662975	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025494, intron 1 of 12)	intron (NM_025494, intron 1 of 12)	571.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-26637271-2	chr14	26636771	26637771	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007479)	promoter-TSS (NM_007479)	-863.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105052302-4	chr5	105051804	105052804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029509, intron 1 of 9)	intron (NM_029509, intron 1 of 9)	1257.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-12461380-1	chr4	12460880	12461880	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-289365.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39801315-4	chr18	39800807	39801807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27810.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80878746-2	chr12	80878246	80879246	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178682, exon 6 of 6)	3' UTR (NM_178682, exon 6 of 6)	45701.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-70222426-2	chr10	70221926	70222926	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	17762.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-143777181-4	chr1	143776678	143777678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013835)	promoter-TSS (NM_013835)	-100.0	NM_001159866	56207.0	Mm.261004	NM_019562	ENSMUSG00000018189	Uchl5	5830413B11Rik|Uch37	ubiquitin carboxyl-terminal esterase L5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-63831240-4	chr5	63830736	63831736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	18741.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	85.0	107.5	98.5	72.0	96.0	88.5
Merged-chr16-13903685-1	chr16	13903185	13904185	+	1000.0	f0_c57.idr	promoter-TSS (NM_053181)	promoter-TSS (NM_053181)	524.0	NM_001289562	93734.0	Mm.76554	NM_033564	ENSMUSG00000022679	Mpv17l	M-LP	Mpv17 transgene, kidney disease mutant-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121985681-4	chr14	121985133	121986133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 6 of 8)	intron (NM_026861, intron 6 of 8)	-20440.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	27.5	69.5	63.5	15.5	41.0	36.5
Merged-chr4-117133525-1	chr4	117133025	117134025	+	1000.0	f0_c57.idr	intron (NM_001313916, intron 1 of 14)	CpG	438.0	NM_013807	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	16.5	36.0	35.5	22.0	29.5	30.0
Merged-chr1-106171545-4	chr1	106171035	106172035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040630)	promoter-TSS (NR_040630)	-11.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120065491-2	chr11	120064991	120065991	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009734, exon 24 of 26)	exon (NM_009734, exon 24 of 26)	-18346.0	NM_007377	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	0.0	3.0	6.5	0.0	0.0	0.5
Merged-chr11-94601985-6	chr11	94601479	94602479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153807)	promoter-TSS (NM_153807)	-193.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-36815029-4	chr8	36814535	36815535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 4 of 17)	intron (NM_001194940, intron 4 of 17)	-81981.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	16.0	48.0	51.0	44.5	24.5	46.5
Merged-chr10-81221582-4	chr10	81221080	81222080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178662, intron 2 of 12)	intron (NM_178662, intron 2 of 12)	9199.0	NM_178662	16467.0	Mm.127681	NM_178662	ENSMUSG00000034958	Atcay	3322401A10Rik|BB077577|BNIP-H|CLAC|hes|ji	ataxia, cerebellar, Cayman type	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25683716-4	chr7	25683238	25684238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172148, intron 2 of 2)	intron (NM_172148, intron 2 of 2)	2580.0	NM_172148	232987.0	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-150393208-4	chr1	150392720	150393720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145511)	promoter-TSS (NM_145511)	-140.0	NM_001357579	226499.0	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-167337929-4	chr1	167337458	167338458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12033.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94199006-4	chr10	94198523	94199523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025551)	promoter-TSS (NM_025551)	14.0	NM_025551	66414.0	Mm.27886	NM_025551	ENSMUSG00000020022	Ndufa12	2410011G03Rik|AW112974	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12	protein-coding	28.5	90.5	70.5	67.5	131.0	114.0
Merged-chr9-65346669-4	chr9	65346163	65347163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016688, exon 1 of 5)	exon (NM_016688, exon 1 of 5)	595.0	NM_016688	50996.0	Mm.29193	NM_016688	ENSMUSG00000041837	Pdcd7	C80112|ES18	programmed cell death 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132102876-4	chr2	132102390	132103390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	42218.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87170564-4	chr17	87170061	87171061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24381.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	4.0	0.0	6.5	10.5	2.5	6.0
Merged-chr17-65612660-4	chr17	65612153	65613153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355402, intron 1 of 6)	CpG	902.0	NM_001355402	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	4.0	35.0	8.0	8.5	14.5	22.0
Merged-chr6-89413720-4	chr6	89413212	89414212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 5 of 6)	intron (NM_001167736, intron 5 of 6)	-51099.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-59341408-4	chr14	59340906	59341906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164327)	promoter-TSS (NM_001164327)	-76.0	NM_001164327	236451.0	Mm.247736	NM_001164327	ENSMUSG00000091649	Phf11b	EG236451|Gm4902	PHD finger protein 11B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-105675466-4	chr2	105674968	105675968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013627)	promoter-TSS (NM_013627)	-276.0	NM_001244200	18508.0	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	0.0	0.0	0.0	2.5	0.0	0.0
Merged-chr15-8340791-4	chr15	8340316	8341316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201232, intron 11 of 45)	intron (NM_201232, intron 11 of 45)	103647.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59743796-2	chr15	59743296	59744296	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51163.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28440912-4	chr7	28440385	28441385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039192)	promoter-TSS (NM_001039192)	-52.0	NM_001039192	63986.0	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-117024557-4	chr13	117024107	117025107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 2 of 26)	CpG	909.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	25.5	26.0	9.0	1.5	13.0	11.5
Merged-chr19-37172925-4	chr19	37172423	37173423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045329)	promoter-TSS (NR_045329)	-920.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130172470-4	chr5	130171965	130172965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359233, intron 1 of 7)	intron (NM_001359233, intron 1 of 7)	646.0	NM_001359233	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108832577-4	chr9	108832057	108833057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359572, intron 2 of 35)	CpG	6512.0	NM_001359572	107934.0	Mm.39945	NM_080437	ENSMUSG00000023473	Celsr3	Adgrc3|Fmi1|flamingo|mKIAA0812	cadherin, EGF LAG seven-pass G-type receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100429653-4	chr5	100429162	100430162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_034038)	promoter-TSS (NR_034038)	-127.0	NR_034038	100503199.0	Mm.392282	NR_034038	ENSMUSG00000097772	5430416N02Rik	100041797|Adapt33|Gm3514	RIKEN cDNA 5430416N02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19291435-2	chr7	19290935	19291935	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025364, intron 1 of 6)	intron (NM_001025364, intron 1 of 6)	366.0	NM_001025364	20167.0	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43442256-4	chr4	43441773	43442773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011571)	promoter-TSS (NM_011571)	-4.0	NM_011571	21754.0	Mm.485441	NM_011571	ENSMUSG00000028458	Tesk1	AI326901	testis specific protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35870409-4	chr17	35869921	35870921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146710, intron 2 of 3)	intron (NM_001146710, intron 2 of 3)	3806.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	20.0	73.0	31.0	40.5	58.0	31.5
Merged-chr3-95668175-4	chr3	95667683	95668683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9462.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	42.5	85.0	54.5	20.0	60.0	44.0
Merged-chr6-83775856-4	chr6	83775369	83776369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009357)	promoter-TSS (NM_009357)	-57.0	NM_009357	21766.0	Mm.28371	NM_009357	ENSMUSG00000014748	Tex261	3110001O07Rik|AA409339|AI480706|AL033351|TEG-261	testis expressed gene 261	protein-coding	0.0	8.0	6.5	5.0	12.5	5.5
Merged-chr7-102234160-3	chr7	102233654	102234654	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111937, intron 2 of 5)	intron (NR_111937, intron 2 of 5)	11126.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-140785754-2	chr6	140785254	140786254	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	158869.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-35757809-4	chr5	35757300	35758300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177696)	promoter-TSS (NM_001177696)	-80.0	NM_001177697	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	3.0	8.5	7.0	2.0	5.0	9.0
Merged-chr3-90246970-2	chr3	90246470	90247470	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-1222.0	NM_013901	30791.0	Mm.294709	NM_013901	ENSMUSG00000052310	Slc39a1	Zip1|Zirtl	solute carrier family 39 (zinc transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-20951892-4	chr5	20951384	20952384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080977)	promoter-TSS (NM_001080977)	-62.0	NM_001080977	242860.0	Mm.254286	NM_001080977	ENSMUSG00000039968	Rsbn1l	8430412F05Rik|AI447441|C330002G24Rik	round spermatid basic protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19310868-2	chr3	19310368	19311368	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001122759, exon 1 of 13)	exon (NM_001122759, exon 1 of 13)	454.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35061887-2	chr17	35061387	35062387	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001191012)	TTS (NM_001191012)	-2550.0	NR_001462	114763.0	Mm.491064	NR_001462		G6bos	G6b|NG31	G6b opposite strand	ncRNA	2.0	0.0	0.0	0.0	5.5	0.5
Merged-chr6-128760178-4	chr6	128759652	128760652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	28489.0	NM_001159904	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	7.0	1.5	3.0	1.0	4.0	2.0
Merged-chr1-34433049-2	chr1	34432549	34433549	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_039562)	TTS (NR_039562)	150.0	NR_039562	100628580.0		NR_039562	ENSMUSG00000092852	Mir5103	mir-5103|mmu-mir-5103|mu-mir-5103	microRNA 5103	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107327517-4	chr11	107326988	107327988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	-138107.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78244806-4	chr15	78244316	78245316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008677)	promoter-TSS (NM_008677)	5.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	67.0	160.5	132.5	73.0	187.5	118.5
Merged-chr9-123722909-4	chr9	123722408	123723408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5283.0	NR_151689	93730.0	Mm.378263	NM_033322	ENSMUSG00000025245	Lztfl1	5530402H04Rik|6130400H19Rik|AI414725|AW048545	leucine zipper transcription factor-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58960194-4	chr11	58959700	58960700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1511.0	NM_001318003	382523.0		NM_001318003		Gm12260	H3t	predicted gene 12260	protein-coding	138.0	415.5	198.0	20.0	91.0	50.5
Merged-chr7-116524712-4	chr7	116524225	116525225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360375, intron 5 of 14)	intron (NM_001360375, intron 5 of 14)	20356.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-91270574-4	chr10	91270090	91271090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49971.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167254397-4	chr2	167253900	167254900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13863.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-20033094-4	chr4	20032591	20033591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-8961.0	NM_010281	14590.0	Mm.20461	NM_010281	ENSMUSG00000073987	Ggh	gamma-GH	gamma-glutamyl hydrolase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40037484-4	chr12	40036999	40037999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007487)	promoter-TSS (NM_007487)	-123.0	NM_007487	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112762267-4	chr12	112761784	112762784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178911, intron 1 of 10)	intron (NM_178911, intron 1 of 10)	1629.0	NM_178911	104759.0	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21186230-4	chr5	21185726	21186726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175437)	promoter-TSS (NM_175437)	-41.0	NR_153365	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-80757589-4	chr1	80757092	80758092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	961.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36875075-4	chr1	36874597	36875597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 3 of 40)	ORR1E|LTR|ERVL-MaLR	64430.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128722433-4	chr2	128721916	128722916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	23501.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-124424666-4	chr9	124424158	124425158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027950, exon 2 of 2)	non-coding (NR_027950, exon 2 of 2)	871.0	NR_015516	75135.0	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100600568-4	chr13	100600049	100601049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178410, exon 4 of 6)	exon (NM_178410, exon 4 of 6)	16395.0	NM_178410	218518.0	Mm.25300	NM_178410	ENSMUSG00000021636	Marveld2	BC003296|MARVD2|Mrvldc2|Tric|Trica|Tricb|Tricc	MARVEL (membrane-associating) domain containing 2	protein-coding	0.0	2.5	6.5	0.0	2.5	6.0
Merged-chr5-17885474-4	chr5	17884990	17885990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	3469.0	NM_001159558	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101982038-4	chr11	101981541	101982541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028207, intron 1 of 2)	intron (NM_028207, intron 1 of 2)	2750.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	32.0	179.0	86.5	34.0	112.0	74.0
Merged-chr2-137117530-4	chr2	137117030	137118030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-8595	-1010.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141273484-2	chr7	141272984	141273984	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114322, intron 7 of 14)	intron (NM_001114322, intron 7 of 14)	3302.0	NM_028069	72040.0	Mm.29080	NM_028069	ENSMUSG00000025497	Cdhr5	1810074H01Rik|AI481143|Mucdhl|Mupcdh	cadherin-related family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120588781-4	chr5	120588296	120589296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145853)	promoter-TSS (NM_145853)	-183.0	NM_145853	252972.0	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80105655-4	chr10	80105147	80106147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-2945.0	NM_001359637	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-12818804-4	chr7	12818286	12819286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026046)	promoter-TSS (NM_026046)	74.0	NM_026046	67230.0	Mm.333574	NM_026046	ENSMUSG00000057894	Zfp329	2810439M05Rik|4632409L22Rik|ZNF329	zinc finger protein 329	protein-coding	1.5	0.0	0.0	0.0	6.5	1.0
Merged-chr7-125561497-4	chr7	125560988	125561988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008700, intron 1 of 10)	intron (NM_001008700, intron 1 of 10)	9206.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	17.5	90.5	66.5	29.0	61.0	31.5
Merged-chr12-102366251-4	chr12	102365730	102366730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 5 of 9)	intron (NM_177620, intron 5 of 9)	73583.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121453205-2	chr5	121452706	121453706	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026129)	promoter-TSS (NM_026129)	497.0	NM_029912	77462.0	Mm.358781	NM_029912	ENSMUSG00000029452	Tmem116	4930406A18Rik|4930513P12Rik|C030022K24Rik	transmembrane protein 116	protein-coding	18.5	20.0	13.5	14.5	25.0	12.0
Merged-chr8-3392997-4	chr8	3392516	3393516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133962)	promoter-TSS (NM_133962)	8.0	NM_133962	102098.0	Mm.170461	NM_133962	ENSMUSG00000004568	Arhgef18	AI467246|D030053O22Rik	rho/rac guanine nucleotide exchange factor (GEF) 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-53881419-4	chr10	53880947	53881947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130538.0	NM_001081428	75906.0	Mm.436785	NM_001081428	ENSMUSG00000019856	Fam184a	3110012E06Rik|4930438C08Rik|4930589M24Rik	family with sequence similarity 184, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69205808-4	chr3	69205318	69206318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16601.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	28.5	45.5	38.0	66.5	120.0	102.5
Merged-chr9-45281073-4	chr9	45280562	45281562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11913.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99263161-4	chr10	99262657	99263657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026268)	promoter-TSS (NM_026268)	-74.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184558365-4	chr1	184557883	184558883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040472)	promoter-TSS (NR_040472)	-692.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	49.0	77.0	40.0	17.5	42.0	9.0
Merged-chr9-53700638-4	chr9	53700134	53701134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175562, intron 1 of 1)	intron (NM_175562, intron 1 of 1)	5598.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	6.0	3.0	2.0	2.0	5.0	6.5
Merged-chr18-66475900-4	chr18	66475416	66476416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17312.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	34.5	51.5	24.0	32.5	49.5	24.0
Merged-chr2-117838604-4	chr2	117838109	117839109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040631, intron 2 of 5)	intron (NR_040631, intron 2 of 5)	16681.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	28.0	49.5	40.0	16.0	58.5	34.5
Merged-chr2-153128907-2	chr2	153128407	153129407	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 3 of 12)	intron (NM_001172117, intron 3 of 12)	20439.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95682815-4	chr9	95682325	95683325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 5 of 8)	intron (NM_029620, intron 5 of 8)	45197.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-89000129-1	chr11	88999629	89000629	+	1000.0	f0_balb.idr	intron (NM_009546, intron 1 of 8)	intron (NM_009546, intron 1 of 8)	726.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	153.0	319.0	284.0	156.0	328.5	259.5
Merged-chr1-184614925-4	chr1	184614408	184615408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57217.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-61294988-4	chr3	61294469	61295469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69538.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122792598-3	chr10	122792106	122793106	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 2 of 9)	B2_Mm2|SINE|B2	113291.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	16.0	23.5	34.0	4.5	4.5	5.5
Merged-chr1-84426809-4	chr1	84426298	84427298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152915, intron 8 of 12)	intron (NM_152915, intron 8 of 12)	-142153.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88143258-4	chr3	88142767	88143767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	895.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121693213-3	chr3	121692708	121693708	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22445.0	NM_001033814	619318.0	Mm.371258	NM_001033814	ENSMUSG00000074248	4930432M17Rik	-	RIKEN cDNA 4930432M17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-63931780-4	chr17	63931273	63932273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 7 of 18)	Lx10|LINE|L1	-6199.0	NM_008000	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146502244-4	chr6	146501749	146502749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010586)	promoter-TSS (NM_010586)	-26.0	NM_019923	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	34.0	54.0	67.0	42.0	68.0	55.5
Merged-chr14-121379284-7	chr14	121378753	121379753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145465)	promoter-TSS (NM_145465)	-23.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	16.0	52.0	44.5	32.5	41.5	37.5
Merged-chr2-4917914-2	chr2	4917414	4918414	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1082.0	NM_010726	16922.0	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24425245-4	chr5	24424743	24425743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009207)	promoter-TSS (NM_009207)	11.0	NM_009207	20535.0	Mm.4580	NM_009207	ENSMUSG00000028962	Slc4a2	Ae2|B3RP	solute carrier family 4 (anion exchanger), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91545167-4	chr16	91544647	91545647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1|DNA|hAT-Tip100	-1947.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	14.5	6.5	8.0	5.0	20.5	6.5
Merged-chr10-76468847-4	chr10	76468330	76469330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019434)	promoter-TSS (NM_019434)	-141.0	NM_019434	54387.0	Mm.30098	NM_019434	ENSMUSG00000001150	Mcm3ap	GANP|mKIAA0572	minichromosome maintenance complex component 3 associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-60469490-4	chr3	60469000	60470000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-3330.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-126630266-4	chr3	126629788	126630788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	L1ME2|LINE|L1	33337.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	145.5	269.5	252.0	123.5	298.5	249.0
Merged-chr2-167063145-4	chr2	167062633	167063633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033196)	promoter-TSS (NM_001033196)	-118.0	NM_001033196	98999.0	Mm.297074	NM_001033196	ENSMUSG00000039501	Znfx1	AI481105|Astx3	zinc finger, NFX1-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57891129-2	chr15	57890629	57891629	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024207, intron 1 of 7)	intron (NM_024207, intron 1 of 7)	1289.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17601122-4	chr17	17600609	17601609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	B1F|SINE|Alu	23380.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	28.0	99.5	75.5	28.0	85.5	91.0
Merged-chr18-56709012-4	chr18	56708513	56709513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010721, intron 1 of 10)	CpG	1200.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-56181703-4	chr13	56181200	56182200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2815.0	NM_001168615	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	0.5	9.5	10.0	3.0	23.0	10.5
Merged-chr6-142746948-4	chr6	142746458	142747458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9728.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47734234-4	chr9	47733734	47734734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	83974.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	84.5	196.0	118.0	95.5	227.0	129.5
Merged-chr13-105301767-2	chr13	105301267	105302267	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-7282.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44849831-4	chr7	44849274	44850274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253920)	promoter-TSS (NM_001253920)	75.0	NR_030488	735269.0		NR_030488	ENSMUSG00000076051	Mir707	Mirn707|mmu-mir-707	microRNA 707	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5774045-4	chr13	5773563	5774563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84029.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-17180908-4	chr11	17180405	17181405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024459, intron 1 of 5)	intron (NM_024459, intron 1 of 5)	21607.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	9.5	10.0	9.5	2.0	14.0	15.5
Merged-chr6-86593627-4	chr6	86593123	86594123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-34551.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12027810-2	chr13	12027310	12028310	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023868, intron 1 of 104)	intron (NM_023868, intron 1 of 104)	79135.0	NM_023868	20191.0	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96977332-3	chr11	96976871	96977871	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030220, intron 1 of 6)	CpG	317.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125555668-4	chr7	125555168	125556168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008700, intron 1 of 10)	intron (NM_001008700, intron 1 of 10)	3386.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	128.5	364.0	211.5	98.5	272.5	144.0
Merged-chr13-46733987-2	chr13	46733487	46734487	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Ala-GCG|tRNA|tRNA	-6138.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	0.5	5.0	2.0	2.0	2.5	8.5
Merged-chr2-132269415-4	chr2	132268927	132269927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291040, intron 1 of 3)	intron (NM_001291040, intron 1 of 3)	6279.0	NM_138651	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84617464-4	chr12	84616975	84617975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008992)	promoter-TSS (NM_008992)	-9.0	NM_008992	19300.0	Mm.229109	NM_008992	ENSMUSG00000021240	Abcd4	P69r|P70R|Pxmp1l	ATP-binding cassette, sub-family D (ALD), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6983524-2	chr19	6983024	6984024	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011697, intron 6 of 6)	B1_Mur2|SINE|Alu	-3060.0	NM_001166368	14227.0	Mm.4234	NM_008020	ENSMUSG00000056629	Fkbp2	mFKBP13|mFKBP2	FK506 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62322863-4	chr4	62322359	62323359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355385, intron 17 of 27)	ORR1E|LTR|ERVL-MaLR	31312.0	NM_001290518	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-93887215-4	chr11	93886715	93887715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346525, intron 2 of 17)	intron (NM_001346525, intron 2 of 17)	996.0	NM_134012	103537.0	Mm.210334	NM_134012	ENSMUSG00000059474	Mbtd1	AA408199|AI194990|hemp	mbt domain containing 1	protein-coding	1.0	1.5	5.0	1.0	1.5	5.5
Merged-chr12-80793042-4	chr12	80792538	80793538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	2506.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50955740-3	chr14	50955216	50956216	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001123371)	promoter-TSS (NM_001123371)	-425.0	NM_001123371	667034.0	Mm.482171	NM_001123371	ENSMUSG00000068417	Pnp2	-	purine-nucleoside phosphorylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171389016-4	chr1	171388579	171389579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027893)	TTS (NM_027893)	119.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	199.5	455.0	381.0	203.0	643.5	321.5
Merged-chr16-8738968-4	chr16	8738480	8739480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001003918)	promoter-TSS (NM_001003918)	-638.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126429605-4	chr4	126429125	126430125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153402)	promoter-TSS (NM_153402)	-83.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56472992-4	chr17	56472495	56473495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252455, intron 1 of 27)	intron (NM_001252455, intron 1 of 27)	3485.0	NM_001252455	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139399142-2	chr5	139398642	139399642	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	-7245.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58712686-4	chr1	58712213	58713213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009805)	promoter-TSS (NM_009805)	-573.0	NM_207653	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8512045-4	chr15	8511544	8512544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-67581.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57606813-4	chr16	57606314	57607314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025599)	promoter-TSS (NM_025599)	53.0	NM_025599	66497.0	Mm.425976	NM_025599	ENSMUSG00000022748	Cmss1	1110001A06Rik|2610528E23Rik|4930572F24Rik|AV099812|AV122629	cms small ribosomal subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95822661-2	chr11	95822161	95823161	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1839.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32914217-4	chr16	32913682	32914682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310674)	promoter-TSS (NM_001310674)	82.0	NM_001310672	70144.0	Mm.491178	NM_001081255	ENSMUSG00000022801	Lrch3	2210409B11Rik|AW215594|Gm1742	leucine-rich repeats and calponin homology (CH) domain containing 3	protein-coding	18.0	21.0	10.0	9.0	25.5	14.0
Merged-chr6-15846160-4	chr6	15845670	15846670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33A_|LTR|ERVL	125509.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100571257-4	chr11	100570756	100571756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028918, intron 11 of 11)	intron (NM_028918, intron 11 of 11)	-3683.0	NM_009923	12799.0	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5810481-4	chr19	5809983	5810983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CTTG)n|Simple_repeat|Simple_repeat	-7811.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11785742-4	chr11	11785238	11786238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23224.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	11.0	13.5	8.5	1.5	9.0	14.5
Merged-chr13-99288092-4	chr13	99287576	99288576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56602.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	65.5	158.5	110.5	32.0	85.0	69.0
Merged-chr12-113075249-4	chr12	113074742	113075742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291444)	TTS (NM_001291444)	740.0	NM_001361920	75671.0	Mm.23377	NM_029381	ENSMUSG00000012211	Tex22	1700028O09Rik|AV210422|Tep22	testis expressed gene 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101268078-2	chr15	101267578	101268578	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010444, intron 1 of 6)	intron (NM_010444, intron 1 of 6)	1232.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	1.0	19.5	3.5	17.5	38.5	8.5
Merged-chr4-70546371-4	chr4	70545879	70546879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-11451.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61948209-4	chr9	61947724	61948724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1425.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99354093-4	chr10	99353576	99354576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90845.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145121770-4	chr6	145121261	145122261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008511)	promoter-TSS (NM_008511)	22.0	NM_008511	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	261.5	435.0	366.0	169.5	560.5	275.0
Merged-chr3-95281832-4	chr3	95281327	95282327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_173347, exon 1 of 8)	5' UTR (NM_173347, exon 1 of 8)	249.0	NM_173347	229589.0	Mm.14155	NM_173347	ENSMUSG00000015711	Prune1	9230112O05Rik|C130058A12|DRES-17|HTCD37|PRUNEM1|Prune|Prune-M1	prune exopolyphosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-58659442-4	chr18	58658970	58659970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025478)	promoter-TSS (NM_025478)	-12.0	NM_025478	66307.0	Mm.182574	NM_025478	ENSMUSG00000024601	Isoc1	2610034N03Rik	isochorismatase domain containing 1	protein-coding	14.0	31.0	31.0	8.5	21.5	17.5
Merged-chr3-95523955-4	chr3	95523463	95524463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2823.0	NM_021281	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	0.0	10.0	3.0	0.0	2.0	2.0
Merged-chr9-90240052-2	chr9	90239552	90240552	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	MTE2a|LTR|ERVL-MaLR	30717.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80772641-4	chr17	80772124	80773124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44599.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113483359-4	chr6	113482844	113483844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133930)	promoter-TSS (NM_133930)	-12.0	NM_133930	171508.0	Mm.41593	NM_133930	ENSMUSG00000030284	Creld1	AI843811|i11E7	cysteine-rich with EGF-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36132636-2	chr1	36132136	36133136	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCTG)n|Simple_repeat|Simple_repeat	11677.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88287689-4	chr1	88287147	88288147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10068.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173739331-4	chr2	173738831	173739831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019806, intron 1 of 5)	B1F|SINE|Alu	1760.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62221257-4	chr11	62220768	62221768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001281818, exon 15 of 15)	3' UTR (NM_001281818, exon 15 of 15)	-27716.0	NM_007413	11541.0	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96287615-4	chr15	96287260	96288260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175251, exon 1 of 21)	exon (NM_175251, exon 1 of 21)	238.0	NM_175251	77044.0	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|BAF200|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118925444-4	chr9	118924928	118925928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1108.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70994539-4	chr14	70994025	70995025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	104418.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	22.5	65.5	68.0	29.0	43.0	35.5
Merged-chr11-87759720-4	chr11	87759213	87760213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172449)	promoter-TSS (NM_172449)	-828.0	NM_172449	207777.0	Mm.342019	NM_172449	ENSMUSG00000034156	Tspoap1	Bzrap1|D230016K05|PRAX-1|mKIAA0612	TSPO associated protein 1	protein-coding	22.5	45.5	30.0	11.5	17.5	25.5
Merged-chr6-34675095-4	chr6	34674596	34675596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 2 of 13)	ORR1E|LTR|ERVL-MaLR	-34348.0	NM_145575	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85745935-4	chr12	85745434	85746434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145447)	promoter-TSS (NM_145447)	-605.0	NM_145447	217721.0	Mm.301076	NM_145447	ENSMUSG00000034258	Flvcr2	CCT|Mfsd7c	feline leukemia virus subgroup C cellular receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-41845303-4	chr5	41844770	41845770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310601)	promoter-TSS (NM_001310601)	-955.0	NM_001081422	665775.0	Mm.158726	NM_001081422	ENSMUSG00000061755	Bod1l	A230054D04Rik|AI853319|FAM44A|mKIAA1327	biorientation of chromosomes in cell division 1-like	protein-coding	21.0	55.0	19.0	15.5	21.0	23.5
Merged-chr4-129742917-4	chr4	129742413	129743413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045036)	promoter-TSS (NR_045036)	-610.0	NR_045036	20218.0	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	89.5	287.5	235.5	110.5	244.5	202.0
Merged-chr4-136891022-7	chr4	136890443	136891443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007574, intron 2 of 2)	intron (NM_007574, intron 2 of 2)	1971.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	168.5	304.5	225.5	100.5	233.0	162.5
Merged-chr7-25632859-4	chr7	25632336	25633336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007533, intron 5 of 8)	MIRc|SINE|MIR	5212.0	NM_146184	232984.0	Mm.192369	NM_146184	ENSMUSG00000059479	B3gnt8	B3galt7|B7galt7|BC025206	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121597420-4	chr3	121596920	121597920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46065.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-104937475-6	chr14	104936939	104937939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015593, intron 4 of 5)	intron (NR_015593, intron 4 of 5)	177237.0	NR_040628	100502987.0	Mm.124957	NR_040628		Gm17066	-	predicted gene 17066	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118158289-4	chr2	118157790	118158790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46414.0	NM_001313914	21825.0	Mm.4159	NM_011580	ENSMUSG00000040152	Thbs1	TSP-1|TSP1|Thbs-1|tbsp1	thrombospondin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78418142-4	chr17	78417646	78418646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285946)	promoter-TSS (NM_001285946)	6.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-74208654-4	chr13	74208161	74209161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177333)	promoter-TSS (NM_177333)	39.0	NM_177333	211446.0	Mm.261859	NM_177333	ENSMUSG00000034152	Exoc3	2810050O03Rik|E430013E20Rik|Sec6|Sec6l1	exocyst complex component 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-61577804-4	chr2	61577326	61578326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011529)	promoter-TSS (NM_011529)	-760.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165618525-4	chr1	165618033	165619033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	16008.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128843238-4	chr6	128842749	128843749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-16934.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129330758-4	chr2	129330270	129331270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20798.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	5.5	7.5	13.0	8.5	19.5	12.5
Merged-chr6-99523472-4	chr6	99522955	99523955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2462.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164804998-4	chr2	164804479	164805479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178375)	promoter-TSS (NM_178375)	-98.0	NM_133240	170789.0	Mm.277878	NM_133240	ENSMUSG00000017307	Acot8	PTE-2|Pte1	acyl-CoA thioesterase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107582839-2	chr9	107582339	107583339	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019750, exon 2 of 2)	5' UTR (NM_019750, exon 2 of 2)	1543.0	NM_178020	109685.0	Mm.447916	NM_178020	ENSMUSG00000036091	Hyal3	Hyl3	hyaluronoglucosaminidase 3	protein-coding	7.0	12.5	2.5	10.0	2.0	1.0
Merged-chr9-99229610-4	chr9	99229086	99230086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001244762, exon 5 of 5)	exon (NM_001244762, exon 5 of 5)	7653.0	NM_001244762	623459.0	Mm.260891	NM_001244762	ENSMUSG00000096316	Faiml	EG623459|Gm6432	Fas apoptotic inhibitory molecule like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60298444-4	chr2	60297943	60298943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013825, intron 34 of 34)	ORR1D2|LTR|ERVL-MaLR	-13959.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-57878152-4	chr18	57877633	57878633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009194)	promoter-TSS (NM_009194)	-545.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	23.0	59.5	69.5	14.5	66.0	64.5
Merged-chr16-91413300-4	chr16	91412823	91413823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008349, intron 3 of 6)	intron (NM_008349, intron 3 of 6)	7088.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118092346-3	chr10	118091898	118092898	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49389.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	15.0	13.0	14.0	0.0	0.0	1.0
Merged-chr16-11385983-4	chr16	11385501	11386501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 4 of 20)	intron (NM_028964, intron 4 of 20)	-19647.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36837085-4	chr17	36836573	36837573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286727)	promoter-TSS (NM_001286727)	-73.0	NM_001025599	22670.0	Mm.34587	NM_030698	ENSMUSG00000024457	Trim26	AI462198|Zfp173|Zfp1736	tripartite motif-containing 26	protein-coding	67.0	177.0	134.0	53.0	165.0	101.0
Merged-chr10-22306655-4	chr10	22306165	22307165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015465)	promoter-TSS (NR_015465)	-55.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	17.0	35.5	21.5	36.5	46.0	57.5
Merged-chr8-66334458-4	chr8	66333944	66334944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 4 of 7)	intron (NM_175188, intron 4 of 7)	-51857.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70328476-4	chr9	70327996	70328996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 9 of 27)	intron (NM_181072, intron 9 of 27)	77257.0	NR_049200	100885839.0		NR_049200	ENSMUSG00000093763	Mir5626	Gm25590|mir-5626|mmu-mir-5626	microRNA 5626	ncRNA	24.5	23.5	15.5	31.0	24.0	46.5
Merged-chr16-34300076-2	chr16	34299576	34300576	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 9 of 59)	intron (NM_177357, intron 9 of 59)	213951.0	NM_001164268	545156.0	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59150885-2	chr4	59150385	59151385	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38665.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29985237-4	chr6	29984738	29985738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040263)	promoter-TSS (NR_040263)	-91.0	NR_040264	76419.0	Mm.84522	NR_040263	ENSMUSG00000045709	Smkr-ps	1700023L04Rik	smal lysine rich protein 1, pseudogene	ncRNA	15.0	13.0	9.5	19.0	16.0	8.5
Merged-chr11-70669353-4	chr11	70668858	70669858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172561)	promoter-TSS (NM_172561)	58.0	NM_172561	216873.0	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23812714-5	chr18	23812195	23813195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	8725.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71389643-4	chr2	71389134	71390134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026115, intron 1 of 10)	intron (NM_026115, intron 1 of 10)	374.0	NM_026115	107435.0	Mm.272472	NM_026115	ENSMUSG00000027018	Hat1	2410071B14Rik|AA536933|Hat-1|KAT1	histone aminotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35587832-4	chr8	35587343	35588343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081279)	promoter-TSS (NM_001081279)	45.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	8.5	4.0	8.0	12.5	7.0	9.0
Merged-chr17-71486766-3	chr17	71486262	71487262	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11419.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	106.5	269.5	172.0	58.0	159.0	112.5
Merged-chr18-75502776-4	chr18	75502286	75503286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 9 of 11)	intron (NM_201354, intron 9 of 11)	-11859.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	45.0	59.5	52.0	43.5	54.0	35.0
Merged-chr14-31641108-4	chr14	31640623	31641623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025295)	promoter-TSS (NM_025295)	66.0	NM_025295	26363.0	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58266639-4	chr9	58266143	58267143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13479.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-33168871-2	chr14	33168371	33169371	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146022, intron 1 of 58)	intron (NM_001146022, intron 1 of 58)	16195.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-28583047-6	chr2	28582535	28583535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001290484, exon 1 of 12)	5' UTR (NM_001290484, exon 1 of 12)	244.0	NM_148928	70239.0	Mm.274120	NM_148928	ENSMUSG00000026816	Gtf3c5	2700084A09Rik|TFIIIC63|TFiiiC2-63	general transcription factor IIIC, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34443479-2	chr1	34442979	34443979	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178601, exon 4 of 9)	exon (NM_178601, exon 4 of 9)	3650.0	NM_178601	27993.0	Mm.289667	NM_178601	ENSMUSG00000026127	Imp4	AA409888|AV031295|D1Wsu40e	IMP4, U3 small nucleolar ribonucleoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-36409626-4	chr19	36409083	36410083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029508, intron 1 of 8)	CpG	30516.0	NM_029508	76073.0	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	0.0	17.0	5.0	3.0	26.0	3.0
Merged-chr5-118560203-4	chr5	118559706	118560706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172424)	promoter-TSS (NM_172424)	-513.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	3.5	21.5	4.0	3.0	0.0	2.0
Merged-chr8-88662522-4	chr8	88662031	88663031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 3 of 12)	intron (NM_145857, intron 3 of 12)	15184.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	90.5	251.0	124.0	71.5	169.0	134.0
Merged-chr11-55208453-4	chr11	55207980	55208980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153139, intron 1 of 10)	intron (NM_153139, intron 1 of 10)	4140.0	NM_153139	215335.0	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80935979-2	chr10	80935479	80936479	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5888.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-3005651-7	chr18	3005115	3006115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117797.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87294150-2	chr17	87293650	87294650	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 3 of 19)	intron (NM_028639, intron 3 of 19)	11264.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-31910710-4	chr18	31910236	31911236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026006, exon 1 of 1)	exon (NM_026006, exon 1 of 1)	1167.0	NM_026006	67158.0	Mm.31537	NM_026006	ENSMUSG00000044982	Sft2d3	2610206C24Rik|AI847965|AW046173	SFT2 domain containing 3	protein-coding	30.0	81.5	77.5	4.5	69.0	41.0
Merged-chr13-49196623-3	chr13	49196117	49197117	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013610)	TTS (NM_013610)	9070.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123139953-4	chr4	123139454	123140454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019489)	promoter-TSS (NM_019489)	-13.0	NM_019489	56031.0	Mm.126873	NM_019489	ENSMUSG00000028651	Ppie	2010010D16Rik|Cyp33	peptidylprolyl isomerase E (cyclophilin E)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99375891-4	chr5	99375391	99376391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-122964.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-3779965-4	chr13	3779460	3780460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	24358.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	8.0	36.5	11.5	7.5	33.5	18.0
Merged-chr15-51991167-2	chr15	51990667	51991667	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009009, intron 1 of 13)	CpG	593.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116110789-4	chr11	116110307	116111307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172570)	promoter-TSS (NM_172570)	-572.0	NM_172570	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43560504-4	chr4	43560006	43561006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011602, intron 1 of 56)	intron (NM_011602, intron 1 of 56)	2077.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	49.0	83.0	60.5	12.5	103.5	72.5
Merged-chr2-145860763-4	chr2	145860235	145861235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028724, exon 9 of 13)	exon (NM_028724, exon 9 of 13)	-42506.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	20.0	17.5	35.5	18.0	82.0	55.0
Merged-chr5-144965989-5	chr5	144965533	144966533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029438)	promoter-TSS (NM_029438)	-203.0	NM_029438	75788.0	Mm.27735	NM_029438	ENSMUSG00000038780	Smurf1	4930431E10Rik|mKIAA1625	SMAD specific E3 ubiquitin protein ligase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112252666-3	chr5	112252226	112253226	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001312884)	promoter-TSS (NM_001312884)	-208.0	NM_021351	12959.0	Mm.40324	NM_021351	ENSMUSG00000066975	Cryba4	-	crystallin, beta A4	protein-coding	3.5	5.5	1.0	0.0	0.0	0.0
Merged-chr9-41160993-4	chr9	41160487	41161487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2925.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	116.0	288.0	191.5	62.0	129.0	97.0
Merged-chr11-118134589-2	chr11	118134089	118135089	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5370.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54807914-4	chr11	54807403	54808403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12016.0	NR_040284	432562.0	Mm.406948	NR_040284	ENSMUSG00000086789	Lyrm7os	Gm12228	LYR motif containing 7, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10418012-4	chr16	10417497	10418497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011955, intron 4 of 10)	intron (NM_011955, intron 4 of 10)	6059.0	NM_011955	26425.0	Mm.29037	NM_011955	ENSMUSG00000022503	Nubp1	-	nucleotide binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35337076-4	chr2	35336578	35337578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013515)	promoter-TSS (NM_013515)	-69.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17619240-4	chr17	17618751	17619751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	5238.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	73.5	188.0	128.5	57.0	116.5	93.0
Merged-chr11-116413806-4	chr11	116413326	116414326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027258)	promoter-TSS (NM_027258)	-794.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	1.5	11.0	7.0	2.0	11.0	7.0
Merged-chr13-24792531-4	chr13	24792006	24793006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9151.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53452762-3	chr19	53452260	53453260	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028427, intron 2 of 9)	intron (NR_028427, intron 2 of 9)	12036.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	1.0	4.5	11.0	46.0	29.5	40.0
Merged-chr17-56291297-4	chr17	56290787	56291787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025836)	promoter-TSS (NM_025836)	-776.0	NM_025836	66905.0	Mm.311696	NM_025836	ENSMUSG00000024197	Plin3	1300012C15Rik|M6prbp1|Tip47	perilipin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-14640373-4	chr14	14639873	14640873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62652.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-107900608-4	chr5	107900149	107901149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016980, intron 1 of 7)	CpG	121.0	NM_016980	100503670.0	Mm.277897	NM_016980	ENSMUSG00000058558	Rpl5	U21RNA	ribosomal protein L5	protein-coding	11.5	20.0	41.5	10.5	51.5	36.0
Merged-chr12-84243626-1	chr12	84243126	84244126	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-24745.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141902508-4	chr7	141902009	141903009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347562)	promoter-TSS (NM_001347562)	-48.0	NM_001347562	54473.0	Mm.103551	NM_023764	ENSMUSG00000025139	Tollip	4930403G24Rik|4931428G15Rik	toll interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125393254-4	chr5	125392749	125393749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3232.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	67.5	153.5	113.0	54.0	143.0	101.0
Merged-chr3-121885051-4	chr3	121884540	121885540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68189.0	NM_172525	214137.0	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88252236-3	chr7	88251741	88252741	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-25844.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	26.5	72.5	57.5	28.0	103.5	69.0
Merged-chr10-37190240-4	chr10	37189711	37190711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51285.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57528008-2	chr9	57527508	57528508	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007747, intron 1 of 4)	B3A|SINE|B2	6776.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57228843-4	chr16	57228336	57229336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 1 of 17)	MTC|LTR|ERVL-MaLR	2630.0	NM_026254	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120517730-4	chr5	120517237	120518237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 2 of 13)	intron (NM_001177595, intron 2 of 13)	6545.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13966946-4	chr10	13966439	13967439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	CpG-904	560.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	52.5	99.0	67.0	53.5	90.5	68.5
Merged-chr14-118938873-4	chr14	118938329	118939329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008929, intron 1 of 11)	intron (NM_008929, intron 1 of 11)	897.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30574382-4	chr14	30573867	30574867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009388, exon 14 of 14)	3' UTR (NM_009388, exon 14 of 14)	2218.0	NR_037237	100526475.0		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	11.5	3.5	15.0	5.5	0.0	4.5
Merged-chr9-41179251-4	chr9	41178738	41179738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21176.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	3.5	13.5	14.5	0.0	4.0	11.5
Merged-chr3-89196703-4	chr3	89196204	89197204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6221.0	NM_001077411	14466.0	Mm.5031	NM_008094	ENSMUSG00000028048	Gba	GBA1|GC|GCase|GLUC|betaGC	glucosidase, beta, acid	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47148582-4	chr19	47148066	47149066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4392.0	NM_001081271	546729.0	Mm.439624	NM_001081271	ENSMUSG00000079258	Calhm1	EG546729	calcium homeostasis modulator 1	protein-coding	64.5	137.0	128.0	54.0	137.0	110.0
Merged-chr12-55361145-4	chr12	55360633	55361633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025373, intron 4 of 6)	intron (NM_025373, intron 4 of 6)	-23089.0	NM_001310583	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-111093163-4	chr11	111092673	111093673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27009.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	26.0	80.0	23.0	26.0	17.0	14.5
Merged-chr16-22009780-2	chr16	22009282	22010282	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001357424, intron 1 of 15)	CpG	298.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	79.5	257.5	116.0	0.0	1.0	129.5
Merged-chr10-11510178-2	chr10	11509678	11510678	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-99046.0	NM_013898	30058.0	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-148614801-2	chr6	148614301	148615301	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045867)	promoter-TSS (NR_045867)	-492.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-69212216-2	chr10	69211716	69212716	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081347)	promoter-TSS (NM_001081347)	-441.0	NM_001081347	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-38484987-4	chr3	38484502	38485502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167883)	promoter-TSS (NM_001167883)	-186.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72107976-4	chr6	72107489	72108489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	10381.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56774560-4	chr19	56774070	56775070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39113.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23893149-2	chr18	23892649	23893649	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001162942, exon 8 of 8)	3' UTR (NM_001162942, exon 8 of 8)	-61539.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-53859426-2	chr1	53858926	53859926	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 19 of 28)	intron (NM_001001883, intron 19 of 28)	10002.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	6.5	2.0	0.0	0.0	0.0	0.5
Merged-chr7-45716250-4	chr7	45715746	45716746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172561, intron 1 of 5)	intron (NM_001172561, intron 1 of 5)	-1039.0	NM_020011	56632.0	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	48.0	139.0	101.5	55.5	151.5	139.0
Merged-chr2-129627071-1	chr2	129626571	129627571	+	1000.0	f1_c57bl6.idr	intron (NM_001355158, intron 7 of 8)	intron (NM_001355158, intron 7 of 8)	31609.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	12.0	30.5	22.0	3.5	22.0	25.0
Merged-chr5-18036431-4	chr5	18035931	18036931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73861.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133166450-1	chr4	133165950	133166950	+	1000.0	f0_balb.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	-29205.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	41.0	149.5	114.0	51.0	102.5	121.5
Merged-chr15-99424842-2	chr15	99424346	99425346	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001884, intron 8 of 12)	intron (NM_001001884, intron 8 of 12)	31627.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0.0	0.0	0.0	0.0	2.5	0.0
Merged-chr4-9644319-2	chr4	9643819	9644819	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177852)	promoter-TSS (NM_001177852)	-602.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0.0	8.0	2.0	0.0	2.5	1.0
Merged-chr8-84236191-4	chr8	84235700	84236700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172503, intron 1 of 13)	intron (NM_172503, intron 1 of 13)	842.0	NM_172503	212168.0	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	51.0	133.5	90.5	24.5	138.0	63.0
Merged-chr11-78983877-2	chr11	78983377	78984377	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010708, intron 1 of 10)	intron (NM_010708, intron 1 of 10)	1047.0	NM_001159301	16859.0	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13551985-2	chr9	13551485	13552485	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TAG)n|Simple_repeat|Simple_repeat	-68004.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47515240-4	chr14	47514754	47515754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027414, intron 4 of 5)	intron (NR_027414, intron 4 of 5)	42693.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	75.0	214.0	175.0	69.5	133.0	121.5
Merged-chr16-38763701-4	chr16	38763221	38764221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019804, intron 5 of 6)	intron (NM_019804, intron 5 of 6)	21462.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120571923-2	chr11	120571423	120572423	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011032, intron 1 of 10)	intron (NM_011032, intron 1 of 10)	1330.0	NM_011032	18453.0	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	15.5	14.5	21.0	8.0	55.0	44.5
Merged-chr13-48962772-4	chr13	48962280	48963280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033268, intron 1 of 17)	intron (NM_001033268, intron 1 of 17)	5048.0	NM_001033268	218236.0	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80413418-4	chr18	80412920	80413920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 12 of 12)	intron (NM_026295, intron 12 of 12)	-49166.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	14.0	4.0	9.5	20.0	5.5	5.5
Merged-chr18-46378765-4	chr18	46378266	46379266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66838.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-115789295-4	chr3	115788802	115789802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74247.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56822290-4	chr19	56821760	56822760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3949.0	NM_001002238	83561.0	Mm.247541	NM_031387	ENSMUSG00000025081	Tdrd1	MTR-1	tudor domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-99165108-4	chr11	99164593	99165593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10016.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141437653-4	chr7	141437152	141438152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360523)	TTS (NM_001360523)	222.0	NM_026646	68267.0	Mm.33729	NM_026646	ENSMUSG00000019082	Slc25a22	1300006L01Rik|AI060884|Gc1	solute carrier family 25 (mitochondrial carrier, glutamate), member 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-66210091-4	chr2	66209596	66210596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290669, exon 20 of 28)	exon (NM_001290669, exon 20 of 28)	46521.0	NM_001047604	73668.0	Mm.250868	NM_001047604	ENSMUSG00000034848	Ttc21b	2410066K11Rik|Thm1|aln|mKIAA1992	tetratricopeptide repeat domain 21B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43914730-4	chr1	43914223	43915223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19271.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118162499-2	chr11	118161999	118162999	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33280.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84562058-4	chr1	84561561	84562561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152915, intron 4 of 12)	intron (NM_152915, intron 4 of 12)	-133778.0	NR_039588	100628595.0		NR_039588	ENSMUSG00000093254	Mir5126	mir-5126|mmu-mir-5126|mu-mir-5126	microRNA 5126	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128035497-4	chr10	128034984	128035984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001113199, exon 1 of 9)	5' UTR (NM_001113199, exon 1 of 9)	138.0	NM_001113199	17938.0	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-162740121-4	chr1	162739639	162740639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081290, intron 1 of 34)	CpG	417.0	NM_001081290	226562.0	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	186.5	488.5	331.5	193.5	497.5	363.5
Merged-chr16-30023573-4	chr16	30023078	30024078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045878, intron 3 of 3)	intron (NR_045878, intron 3 of 3)	14911.0	NR_033631	100043102.0	Mm.30797	NR_033631	ENSMUSG00000097184	4632428C04Rik	Gm4231	RIKEN cDNA 4632428C04 gene	ncRNA	4.5	11.0	7.5	0.0	2.0	3.0
Merged-chr4-101172880-4	chr4	101172361	101173361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 10 of 24)	intron (NM_146145, intron 10 of 24)	92421.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	11.5	3.0	7.5	16.5	7.0	12.5
Merged-chr11-86624488-4	chr11	86624000	86625000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 7 of 11)	intron (NM_001356531, intron 7 of 11)	-40342.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158177184-4	chr2	158176683	158177683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-14825.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44415443-1	chr11	44414943	44415943	+	1000.0	f0_c57.idr	TTS (NM_001303244)	TTS (NM_001303244)	15380.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	157.5	432.0	271.0	193.0	409.0	332.0
Merged-chr9-66601200-4	chr9	66600697	66601697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8082.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135008995-4	chr5	135008502	135009502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190437)	promoter-TSS (NM_001190437)	-150.0	NM_001190437	68758.0	Mm.389700	NM_145215	ENSMUSG00000040532	Abhd11	1110054D16Rik|A630008N09Rik|Wbscr21	abhydrolase domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19692104-4	chr7	19691595	19692595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110009, intron 2 of 3)	intron (NM_001110009, intron 2 of 3)	564.0	NM_001110009	11812.0	Mm.182440	NM_007469	ENSMUSG00000040564	Apoc1	Apo-CIB|ApoC-IB|apo-CI|apoC-I	apolipoprotein C-I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23770320-4	chr11	23769835	23770835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009044, intron 1 of 9)	intron (NM_009044, intron 1 of 9)	635.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-93398384-4	chr15	93397853	93398853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175363)	promoter-TSS (NM_175363)	3.0	NM_175363	223828.0	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55316505-4	chr19	55316003	55317003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033573)	promoter-TSS (NM_001033573)	446.0	NM_001293686	53611.0	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25099568-4	chr12	25099064	25100064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3472.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	145.5	378.0	224.0	113.0	309.0	212.0
Merged-chr4-155601605-7	chr4	155601109	155602109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177186, exon 1 of 9)	5' UTR (NM_177186, exon 1 of 9)	193.0	NM_177186	320541.0	Mm.306018	NM_177186	ENSMUSG00000042202	Slc35e2	A530082C11Rik|AI957035	solute carrier family 35, member E2	protein-coding	65.0	163.0	135.0	120.0	200.5	142.0
Merged-chr11-89019007-2	chr11	89018483	89019483	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009546, exon 9 of 9)	3' UTR (NM_009546, exon 9 of 9)	19580.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	13.5	2.5	12.0	8.0	2.0	12.0
Merged-chr5-136083883-4	chr5	136083360	136084360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133914)	promoter-TSS (NM_133914)	-56.0	NM_133914	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	8.0	17.0	3.0	2.5	8.5	0.5
Merged-chr10-98815037-4	chr10	98814512	98815512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99630.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11009554-4	chr8	11009072	11010072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046017, intron 1 of 4)	CpG-13826	-1142.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173352390-4	chr2	173351837	173352837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75804.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116853229-4	chr11	116852750	116853750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011358)	promoter-TSS (NM_011358)	-156.0	NM_011358	20382.0	Mm.21841	NM_011358	ENSMUSG00000034120	Srsf2	D11Wsu175e|MRF-1|Pr264|SC35|Sfrs10|Sfrs2	serine/arginine-rich splicing factor 2	protein-coding	78.0	241.0	151.5	85.0	321.0	205.0
Merged-chr3-135206034-2	chr3	135205534	135206534	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-6529.0	NM_173762	229841.0	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102881079-4	chr11	102880579	102881579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011431)	promoter-TSS (NM_011431)	-104.0	NM_001109995	20624.0	Mm.873	NM_011431	ENSMUSG00000020929	Eftud2	116kDa|Snrp116|U5-116kD	elongation factor Tu GTP binding domain containing 2	protein-coding	5.0	10.5	12.0	2.5	26.5	12.5
Merged-chr13-51846607-4	chr13	51846106	51847106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011817)	promoter-TSS (NM_011817)	-69.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73434205-4	chr13	73433726	73434726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33157.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8311869-4	chr17	8311381	8312381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073374)	promoter-TSS (NR_073374)	-763.0	NR_073374	75060.0	Mm.426530	NR_073374	ENSMUSG00000087478	4930506C21Rik	-	RIKEN cDNA 4930506C21 gene	ncRNA	54.0	103.0	68.0	32.5	87.5	80.0
Merged-chr19-47465126-2	chr19	47464626	47465626	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164717)	promoter-TSS (NM_001164717)	-715.0	NM_008018	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-92091431-4	chr6	92090934	92091934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011630)	promoter-TSS (NM_011630)	16.0	NM_011630	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-39651913-4	chr8	39651410	39652410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	-9232.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	18.0	45.0	13.0	7.0	34.0	16.0
Merged-chr6-146170829-5	chr6	146170298	146171298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 51 of 56)	ORR1E|LTR|ERVL-MaLR	236676.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-68914753-4	chr8	68914401	68915401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	34346.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	11.0	37.0	42.5	26.0	21.0	38.5
Merged-chr8-72008537-4	chr8	72008045	72009045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024444, intron 2 of 12)	intron (NM_024444, intron 2 of 12)	1081.0	NM_024444	72054.0	Mm.160020	NM_024444	ENSMUSG00000003484	Cyp4f18	1810054N16Rik|Cyp4f3|Cypf18	cytochrome P450, family 4, subfamily f, polypeptide 18	protein-coding	33.0	76.0	54.0	11.5	9.5	3.5
Merged-chr1-153557044-2	chr1	153556544	153557544	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7330.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134535324-4	chr4	134534821	134535821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029759)	promoter-TSS (NM_029759)	-53.0	NM_001355187	76824.0	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	27.5	75.0	70.0	39.0	73.0	104.5
Merged-chr6-77335742-3	chr6	77335241	77336241	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145732, intron 8 of 18)	ORR1E|LTR|ERVL-MaLR	46734.0	NR_045141	70753.0	Mm.490700	NR_045141	ENSMUSG00000108077	6330415B21Rik	-	RIKEN cDNA 6330415B21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82863203-4	chr18	82862726	82863726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	7329.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32168664-4	chr5	32168176	32169176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32204.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124439790-4	chr5	124439281	124440281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030241)	promoter-TSS (NM_030241)	-149.0	NM_030241	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10041008-2	chr19	10040508	10041508	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021890)	promoter-TSS (NM_021890)	-540.0	NM_021890	60527.0	Mm.253875	NM_021890	ENSMUSG00000024664	Fads3	AI464531	fatty acid desaturase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106821201-4	chr11	106820694	106821694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025481, exon 19 of 19)	3' UTR (NM_025481, exon 19 of 19)	31942.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53430958-5	chr11	53430501	53431501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001326614)	promoter-TSS (NM_001326614)	-170.0	NM_001326614	22272.0	Mm.251621	NM_025352	ENSMUSG00000044894	Uqcrq	1100001F06Rik|1500040F11Rik|5830407L17Rik|9.5kDa|AA959903|QP-C|Qpc|Uqcrb|c1502	ubiquinol-cytochrome c reductase, complex III subunit VII	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114783856-4	chr5	114783348	114784348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026718, intron 1 of 14)	Tigger7|DNA|TcMar-Tigger	8708.0	NM_026718	68420.0	Mm.275554	NM_026718	ENSMUSG00000041870	Ankrd13a	1100001D10Rik|ANKRD13|AU046136	ankyrin repeat domain 13a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101768284-4	chr13	101767777	101768777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077495)	promoter-TSS (NM_001077495)	-60.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79132388-4	chr2	79131871	79132871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123055.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86994423-2	chr11	86993923	86994923	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005341)	promoter-TSS (NM_001005341)	-661.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143652035-4	chr5	143651566	143652566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163548, intron 1 of 12)	MLT1N2|LTR|ERVL-MaLR	825.0	NM_001163548	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71908703-4	chr8	71908229	71909229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001166645, exon 1 of 3)	5' UTR (NM_001166645, exon 1 of 3)	123.0	NM_001166645	382019.0	Mm.251482	NM_001166645	ENSMUSG00000089857	Zfp882	Gm15468	zinc finger protein 882	protein-coding	0.0	1.0	2.0	2.0	6.0	1.5
Merged-chr10-118141745-4	chr10	118141238	118142238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010785)	promoter-TSS (NM_010785)	-49.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	7.5	18.0	14.5	3.0	18.5	16.0
Merged-chr2-31785258-4	chr2	31784750	31785750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283046, intron 5 of 11)	intron (NM_001283046, intron 5 of 11)	25077.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-20423086-4	chr3	20422573	20423573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55896.0	NM_175086	11608.0	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89213974-4	chr3	89213473	89214473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013604, exon 1 of 8)	exon (NM_013604, exon 1 of 8)	362.0	NM_013604	17827.0	Mm.280943	NM_013604	ENSMUSG00000064068	Mtx1	Gcap6|Mtx	metaxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152796981-4	chr1	152796461	152797461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-3192.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59567323-4	chr9	59566811	59567811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11026.0	NM_175235	76183.0	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26973119-4	chr17	26972626	26973626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005916)	promoter-TSS (NM_001005916)	-53.0	NM_001005916	474156.0	Mm.328890	NM_001005916	ENSMUSG00000079605	Zbtb9	3930402F13Rik	zinc finger and BTB domain containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166420485-4	chr2	166419986	166420986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26965.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-62856408-4	chr13	62855902	62856902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007994, intron 1 of 6)	intron (NM_007994, intron 1 of 6)	1968.0	NM_007994	14120.0	Mm.391871	NM_007994	ENSMUSG00000021456	Fbp2	Fbp-1|Fbp1|Rae-30	fructose bisphosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37704144-2	chr19	37703644	37704644	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6336.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	0.0	19.0	0.0	0.0	0.0	0.0
Merged-chr15-57838908-2	chr15	57838408	57839408	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_199449, exon 4 of 4)	3' UTR (NM_199449, exon 4 of 4)	53510.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107597689-4	chr9	107597193	107598193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_111986)	TTS (NR_111986)	7709.0	NM_009153	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	12.5	31.5	49.5	17.0	49.0	26.5
Merged-chr11-114912584-2	chr11	114912084	114913084	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21802.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45984827-4	chr9	45984348	45985348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357246)	promoter-TSS (NM_001357246)	23.0	NM_001357246	18475.0	Mm.200859	NM_008775	ENSMUSG00000003131	Pafah1b2	2610005M20Rik|AI747451|AU021353|Pafahb|mus[b]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31323953-4	chr14	31323441	31324441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033668)	promoter-TSS (NM_001033668)	-45.0	NM_001033668	110084.0	Mm.101811	NM_001033668	ENSMUSG00000019027	Dnah1	B230373P09Rik|Dnahc1|E030034C22Rik|MDHC7	dynein, axonemal, heavy chain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131210421-4	chr2	131209879	131210879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291032)	promoter-TSS (NM_001291032)	19.0	NR_110992	69596.0	Mm.2937	NM_027129	ENSMUSG00000068264	Ap5s1	0610038L13Rik|2310035K24Rik|AW060727|sigma5	adaptor-related protein 5 complex, sigma 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88554296-4	chr5	88553804	88554804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023054)	promoter-TSS (NM_023054)	-158.0	NM_023054	65961.0	Mm.490364	NM_023054	ENSMUSG00000070697	Utp3	2400011K09Rik|AW557551|C87704|Crl-1|Crl1|Crlz1|Sas10	UTP3 small subunit processome component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160318452-4	chr2	160317953	160318953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033411, intron 1 of 2)	intron (NM_001033411, intron 1 of 2)	9041.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117072531-4	chr10	117072012	117073012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177798, exon 10 of 10)	3' UTR (NM_177798, exon 10 of 10)	-8660.0	NM_007636	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64278970-4	chr15	64278473	64279473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	33700.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69573848-2	chr12	69573348	69574348	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9180.0	NM_001033236	207965.0	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132009962-4	chr4	132009462	132010462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	39116.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88565821-4	chr5	88565308	88566308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289774, intron 1 of 17)	CpG	768.0	NM_001289775	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25203794-4	chr12	25203292	25204292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74618.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	39.0	58.5	51.5	77.0	87.0	104.5
Merged-chr6-29246763-4	chr6	29246251	29247251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25737.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5874932-4	chr13	5874444	5875444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13455.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88278016-4	chr7	88277497	88278497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311790)	promoter-TSS (NM_001311790)	-88.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84311949-4	chr18	84311473	84312473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 8 of 8)	intron (NM_001033341, intron 8 of 8)	223815.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-75408016-4	chr9	75407499	75408499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015806, intron 1 of 5)	intron (NM_015806, intron 1 of 5)	1360.0	NM_027418	50772.0	Mm.480076	NM_015806	ENSMUSG00000042688	Mapk6	2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6	mitogen-activated protein kinase 6	protein-coding	7.5	9.0	3.5	2.5	3.5	6.5
Merged-chr10-94122751-4	chr10	94122251	94123251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 9 of 20)	intron (NM_053072, intron 9 of 20)	-25180.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	52.0	121.5	61.5	33.5	45.5	24.5
Merged-chr2-30416128-4	chr2	30415635	30416635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007760)	promoter-TSS (NM_007760)	85.0	NM_138748	110854.0	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106674820-4	chr11	106674313	106675313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 12 of 14)	intron (NM_001305158, intron 12 of 14)	40468.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0.0	0.0	0.5	0.0	1.0	0.5
Merged-chr17-46674317-4	chr17	46673814	46674814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144857)	promoter-TSS (NM_144857)	-59.0	NM_144857	224823.0	Mm.45101	NM_144857	ENSMUSG00000023971	Rrp36	-	ribosomal RNA processing 36 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135686708-4	chr3	135686207	135687207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 1 of 24)	intron (NM_008689, intron 1 of 24)	4840.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	5.0	14.0	20.0	10.0	40.5	18.5
Merged-chr17-25895645-2	chr17	25895145	25896145	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139154, intron 2 of 6)	intron (NM_139154, intron 2 of 6)	6582.0	NR_028042	100043160.0	Mm.482893	NR_028042		Gm10012	-	cytochrome c oxidase, subunit VIIc pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120158314-4	chr2	120157802	120158802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-3727.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	6.5	10.5	8.5	2.0	8.0	9.0
Merged-chr2-126475946-4	chr2	126475458	126476458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 3 of 27)	intron (NM_001359975, intron 3 of 27)	15595.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4218564-2	chr11	4218064	4219064	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028022, intron 1 of 8)	CpG	313.0	NM_028022	71962.0	Mm.7852	NM_028022	ENSMUSG00000020424	Gatsl3	2410008K03Rik|Castor1	GATS protein-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-77303412-2	chr12	77302912	77303912	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252614, intron 3 of 12)	RLTR28|LTR|ERVL	64673.0	NR_045554	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63120765-2	chr14	63120265	63121265	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1697.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107612866-4	chr9	107612355	107613355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3614.0	NM_001291539	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	4.5	31.5	23.5	3.0	13.5	5.5
Merged-chr2-160225643-4	chr2	160225144	160226144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	101850.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88064714-4	chr17	88064223	88065223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001348248, exon 1 of 23)	5' UTR (NM_001348248, exon 1 of 23)	209.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	28.0	34.5	66.0	24.5	67.5	58.5
Merged-chr9-107998051-4	chr9	107997555	107998555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4593.0	NM_013785	27399.0	Mm.276155	NM_013785	ENSMUSG00000032594	Ip6k1	1200016D08Rik|AU022776|Ihpk1|InsP6|InsP6k1|Itpk6	inositol hexaphosphate kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79172163-4	chr12	79171687	79172687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016800, intron 1 of 5)	CpG	271.0	NM_016800	53612.0	Mm.265929	NM_016800	ENSMUSG00000021124	Vti1b	AU015348|GES30|MVti1b|SNARE|Vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding	70.0	153.5	160.0	65.0	153.5	125.0
Merged-chr4-62505750-2	chr4	62505250	62506250	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008525)	TTS (NM_008525)	-3550.0	NM_024257	72748.0	Mm.41506	NM_024257	ENSMUSG00000038422	Hdhd3	2810435D12Rik	haloacid dehalogenase-like hydrolase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52088579-4	chr3	52088074	52089074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	16432.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8636208-4	chr15	8635732	8636732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_148938, exon 10 of 10)	exon (NM_148938, exon 10 of 10)	74575.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97995394-2	chr3	97994894	97995894	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-18144.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97901180-4	chr3	97900692	97901692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011342)	promoter-TSS (NM_011342)	-35.0	NM_011342	20333.0	Mm.2551	NM_011342	ENSMUSG00000027879	Sec22b	4930564D15Rik|AA517334|AI480645|C81333|ERS-24|Sec22l1	SEC22 homolog B, vesicle trafficking protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95357221-4	chr3	95356694	95357694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018877)	promoter-TSS (NM_018877)	8.0	NM_001163641	84505.0	Mm.490259	NM_018877	ENSMUSG00000015697	Setdb1	AU022152|ESET|KMT1E|mKIAA0067	SET domain, bifurcated 1	protein-coding	4.5	10.0	18.0	0.0	0.0	0.0
Merged-chr1-84839692-6	chr1	84839238	84840238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025386)	promoter-TSS (NM_025386)	-103.0	NM_025386	66153.0	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7871285-4	chr9	7870767	7871767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007464, intron 1 of 8)	intron (NM_007464, intron 1 of 8)	1903.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-57354812-4	chr18	57354360	57355360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028447, exon 1 of 9)	5' UTR (NM_028447, exon 1 of 9)	127.0	NM_028447	73137.0	Mm.29889	NM_028447	ENSMUSG00000024594	Prrc1	1190002C06Rik|2310058D16Rik|3110038B19Rik|9430085A19Rik	proline-rich coiled-coil 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132317396-4	chr7	132316892	132317892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360768)	promoter-TSS (NM_001360768)	-164.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3664623-4	chr8	3664123	3665123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1139.0	NM_026985	69189.0	Mm.175176	NM_026985	ENSMUSG00000013974	Mcemp1	1810033B17Rik	mast cell expressed membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107872843-4	chr9	107872350	107873350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011251)	promoter-TSS (NM_011251)	-31.0	NM_029169	19654.0	Mm.139926	NM_011251	ENSMUSG00000032582	Rbm6	4930506F14Rik|Def-3|NY-LU-12|g16|mKIAA4015	RNA binding motif protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104340714-4	chr8	104340214	104341214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_024217, exon 1 of 5)	5' UTR (NM_024217, exon 1 of 5)	120.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29432120-4	chr17	29431634	29432634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-58911.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	21.0	107.0	83.0	19.0	85.5	59.5
Merged-chr1-153746937-2	chr1	153746437	153747437	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2489.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3607415-4	chr4	3606909	3607909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054089, intron 12 of 12)	intron (NM_054089, intron 12 of 12)	32530.0	NM_054089	116940.0	Mm.171323	NM_054089	ENSMUSG00000028233	Tgs1	D4Ertd800e|Ncoa6ip|Pimt	trimethylguanosine synthase 1	protein-coding	15.0	16.5	21.5	13.5	19.0	24.0
Merged-chr9-22484959-6	chr9	22484438	22485438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178415, intron 2 of 22)	PB1D10|SINE|Alu	9223.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-94954020-4	chr3	94953525	94954525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017395)	promoter-TSS (NM_017395)	-83.0	NM_017395	53970.0	Mm.24308	NM_017395	ENSMUSG00000005774	Rfx5	-	regulatory factor X, 5 (influences HLA class II expression)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-144768649-4	chr5	144768096	144769096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081362)	promoter-TSS (NM_001081362)	-196.0	NM_001081362	100683.0	Mm.273570	NM_001081362	ENSMUSG00000045482	Trrap	AI481500	transformation/transcription domain-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84990533-4	chr8	84990053	84991053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167991)	promoter-TSS (NM_001167991)	-42.0	NM_133255	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	51.0	226.5	146.0	77.0	224.0	138.0
Merged-chr14-55590194-4	chr14	55589699	55590699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029855, intron 2 of 10)	MIR3|SINE|MIR	822.0	NM_011190	19188.0	Mm.371573	NM_011190	ENSMUSG00000079197	Psme2	AA589371|AI788882|PA28b	proteasome (prosome, macropain) activator subunit 2 (PA28 beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-64655362-4	chr11	64654874	64655874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-218700.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	6.0	39.5	41.0	8.5	14.0	10.5
Merged-chr1-97770065-4	chr1	97769570	97770570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173760)	promoter-TSS (NM_173760)	22.0	NM_173760	227399.0	Mm.220817	NM_173760	ENSMUSG00000040648	Ppip5k2	AW555814|Cfap160|D330021B20|Hisppd1|Vip2|mKIAA0433	diphosphoinositol pentakisphosphate kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-106974479-4	chr2	106973970	106974970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025102)	promoter-TSS (NM_001025102)	-73.0	NM_001025102	212772.0	Mm.381231	NM_173750	ENSMUSG00000027122	Arl14ep	2700007P21Rik|4930448O08Rik|ARF7EP	ADP-ribosylation factor-like 14 effector protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-138958748-4	chr3	138958259	138959259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 7 of 13)	intron (NM_001356388, intron 7 of 13)	116442.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	2.0	7.5	1.0	1.5	4.5	3.5
Merged-chr7-128461355-3	chr7	128460861	128461861	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009383, exon 1 of 12)	5' UTR (NM_009383, exon 1 of 12)	152.0	NM_009383	21843.0	Mm.242072	NM_009383	ENSMUSG00000030846	Tial1	5330433G13Rik|AL033329|TIAR|mTIAR	Tia1 cytotoxic granule-associated RNA binding protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127574227-2	chr10	127573727	127574727	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 27 of 88)	intron (NM_008512, intron 27 of 88)	-39668.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.0	16.0	8.0	0.5	1.0	0.0
Merged-chr15-76243465-4	chr15	76242957	76243957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163575)	promoter-TSS (NM_001163575)	-17.0	NM_001163575	671535.0	Mm.373750	NM_001163575	ENSMUSG00000063268	Parp10	-	poly (ADP-ribose) polymerase family, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3665557-4	chr7	3665039	3666039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_181820)	TTS (NM_181820)	301.0	NM_027203	69757.0	Mm.389782	NM_027203	ENSMUSG00000078813	Leng1	1500001K17Rik	leukocyte receptor cluster (LRC) member 1	protein-coding	1.0	2.5	2.0	0.0	4.5	3.5
Merged-chr19-44332063-4	chr19	44331574	44332574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-1252.0	NM_183216	329065.0	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	0.0	0.0	4.5	0.0	3.0	0.0
Merged-chr15-75884267-4	chr15	75883772	75884772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001282443, exon 14 of 14)	exon (NM_001282443, exon 14 of 14)	4451.0	NM_001282443	223645.0		NM_001282443	ENSMUSG00000098678	Mroh6	Gm19570	maestro heat-like repeat family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134764018-4	chr4	134763532	134764532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145554, intron 1 of 8)	intron (NM_145554, intron 1 of 8)	3972.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25858728-4	chr15	25858225	25859225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 1 of 8)	intron (NM_001034851, intron 1 of 8)	15427.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9150143-4	chr13	9149663	9150663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 9 of 17)	intron (NM_172585, intron 9 of 17)	56282.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101767305-4	chr13	101766806	101767806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 1 of 15)	CpG	911.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-42126882-4	chr9	42126379	42127379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2582.0	NM_011436	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	3.5	2.0	1.0	0.0	4.5	6.5
Merged-chr10-67115227-4	chr10	67114721	67115721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12037.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47537114-4	chr19	47536636	47537636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175360)	promoter-TSS (NM_175360)	-17.0	NM_175360	108689.0	Mm.218048	NM_175360	ENSMUSG00000042694	Stn1	0610009H20Rik|2310057J23Rik|AAF-44|AAF44|AI413458|Obfc1|RPA-32	STN1, CST complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107253703-4	chr4	107253218	107254218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355459)	promoter-TSS (NM_001355459)	26.0	NM_001355460	72938.0	Mm.21787	NM_028394	ENSMUSG00000063172	Hspb11	2900042B11Rik|IFT25|PP25	heat shock protein family B (small), member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94629721-4	chr11	94629234	94630234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133807)	promoter-TSS (NM_133807)	-90.0	NM_133807	98238.0	Mm.172720	NM_133807	ENSMUSG00000020869	Lrrc59	AA959742|C78668	leucine rich repeat containing 59	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79858629-2	chr10	79858129	79859129	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077363, intron 2 of 13)	intron (NM_001077363, intron 2 of 13)	-3658.0	NR_029447	414101.0	Mm.401339	NR_029447	ENSMUSG00000091994	E130317F20Rik	-	RIKEN cDNA E130317F20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67200984-2	chr10	67200484	67201484	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 3 of 25)	intron (NM_207221, intron 3 of 25)	15234.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-53863907-5	chr3	53863402	53864402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026435)	promoter-TSS (NM_026435)	-95.0	NM_026435	67890.0	Mm.23067	NM_026435	ENSMUSG00000027746	Ufm1	1810045K17Rik|AI132708|AI463323|Gm10726	ubiquitin-fold modifier 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38078941-4	chr15	38078453	38079453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081359)	promoter-TSS (NM_001081359)	-99.0	NM_001081359	70790.0	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90021247-4	chr7	90020752	90021752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7907.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	39.0	72.5	59.5	23.0	70.0	49.0
Merged-chr1-35890687-4	chr1	35890186	35891186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-177714.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20521450-4	chr9	20520954	20521954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001082485)	promoter-TSS (NM_001082485)	-35.0	NM_001082485	77519.0	Mm.431849	NM_001082485	ENSMUSG00000060510	Zfp266	5330440G10Rik|5730601F06Rik|AW552317	zinc finger protein 266	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57769257-4	chr6	57768747	57769747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 3 of 4)	intron (NM_146168, intron 3 of 4)	55878.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97784302-4	chr15	97783795	97784795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026353)	promoter-TSS (NM_026353)	-70.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45031038-4	chr13	45030557	45031557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28961.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	34.0	23.5	33.0	13.0	29.0	36.5
Merged-chr12-85459117-2	chr12	85458617	85459617	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-14773.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92676689-4	chr16	92676219	92677219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 4 of 6)	intron (NM_001111022, intron 4 of 6)	20610.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	36.0	82.0	53.5	41.0	79.0	52.5
Merged-chr11-103982438-4	chr11	103981915	103982915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007477, intron 4 of 4)	intron (NM_007477, intron 4 of 4)	15544.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93833049-4	chr16	93832542	93833542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045529, intron 1 of 16)	PB1D11|SINE|Alu	921.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	12.0	36.5	21.5	7.0	22.0	12.0
Merged-chr13-110960438-4	chr13	110959940	110960940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56594.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36939823-4	chr1	36939306	36940306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018872)	promoter-TSS (NM_018872)	-279.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139781629-3	chr5	139781096	139782096	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5918.0	NM_026748	68510.0	Mm.292942	NM_026748	ENSMUSG00000029547	Ints1	1110015K06Rik	integrator complex subunit 1	protein-coding	3.0	0.0	0.5	29.5	32.0	32.0
Merged-chr9-21515526-4	chr9	21515017	21516017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5283.0	NR_136911	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135608353-4	chr3	135607854	135608854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 12 of 24)	intron (NM_008689, intron 12 of 24)	83193.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	22.5	63.0	28.0	20.0	52.0	29.0
Merged-chr19-12574319-4	chr19	12573791	12574791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026640, intron 1 of 3)	intron (NM_026640, intron 1 of 3)	766.0	NM_026640	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	204.0	464.5	403.0	177.5	507.0	331.0
Merged-chr8-105326350-4	chr8	105325861	105326861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177449)	promoter-TSS (NM_177449)	-3.0	NM_025486	66320.0	Mm.29990	NM_025486	ENSMUSG00000014856	Tmem208	1700006C06Rik|2610030K20Rik|Hspc171	transmembrane protein 208	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-9390340-4	chr14	9389846	9390846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-493749.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160645843-4	chr2	160645336	160646336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009408)	promoter-TSS (NM_009408)	-61.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172563211-4	chr1	172562771	172563771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027644, exon 6 of 6)	non-coding (NR_027644, exon 6 of 6)	3365.0	NR_027644	240916.0	Mm.71940	NM_177723	ENSMUSG00000049598	Vsig8	A030011M19|EG240916	V-set and immunoglobulin domain containing 8	protein-coding	6.5	6.5	8.5	0.0	0.0	2.5
Merged-chr4-134930807-4	chr4	134930293	134931293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026780)	promoter-TSS (NM_026780)	-187.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6455310-4	chr2	6454788	6455788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102552.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191327666-4	chr1	191327179	191328179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025864, intron 1 of 7)	intron (NM_025864, intron 1 of 7)	1714.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	49.5	135.0	116.0	43.0	149.0	122.5
Merged-chr7-134697685-4	chr7	134697173	134698173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033420, intron 1 of 51)	intron (NM_001033420, intron 1 of 51)	26986.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	23.0	39.0	41.0	17.0	33.5	23.5
Merged-chr6-108564225-3	chr6	108563727	108564727	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58940.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155774595-4	chr4	155774112	155775112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_147776)	promoter-TSS (NM_147776)	-51.0	NM_147776	246228.0	Mm.26515	NM_147776	ENSMUSG00000042116	Vwa1	4932416A11Rik|WARP	von Willebrand factor A domain containing 1	protein-coding	6.5	1.5	11.5	9.0	8.5	5.0
Merged-chr3-57696440-4	chr3	57695935	57696935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3898.0	NM_001033349	242037.0	Mm.291091	NM_001033349	ENSMUSG00000074591	Ankub1	Gm410	ankrin repeat and ubiquitin domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24670100-7	chr16	24669599	24670599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 6 of 12)	intron (NM_178665, intron 6 of 12)	-51756.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115549327-1	chr5	115548827	115549827	+	1000.0	f1_balb.idr	intron (NM_011223, intron 6 of 10)	intron (NM_011223, intron 6 of 10)	-10140.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	0.0	2.0	0.0	3.0	0.0	0.0
Merged-chr11-98789029-4	chr11	98788516	98789516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6500.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59393984-4	chr15	59393478	59394478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 2 of 4)	intron (NM_001164604, intron 2 of 4)	19780.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79063035-4	chr15	79062548	79063548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144849)	promoter-TSS (NM_144849)	-189.0	NM_144849	223690.0	Mm.24262	NM_144849	ENSMUSG00000033055	Ankrd54	C730048E16Rik|EST1068184|EST475269|Liar	ankyrin repeat domain 54	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40782195-4	chr9	40781676	40782676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 6 of 6)	intron (NM_133733, intron 6 of 6)	-19097.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	230.0	632.5	441.0	246.5	484.0	318.5
Merged-chr13-9895251-4	chr13	9894737	9895737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 4 of 4)	intron (NM_033269, intron 4 of 4)	-129916.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59581587-4	chr4	59581076	59582076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024255)	promoter-TSS (NM_024255)	13.0	NM_024255	72479.0	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-53017128-4	chr3	53016636	53017636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026225)	promoter-TSS (NM_026225)	87.0	NM_026225	67542.0	Mm.249548	NM_026225	ENSMUSG00000027742	Cog6	4933405E16Rik|AU018618|mKIAA1134	component of oligomeric golgi complex 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41802059-4	chr19	41801522	41802522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163495)	promoter-TSS (NM_001163495)	62.0	NM_001163495	71085.0	Mm.21646	NM_027667	ENSMUSG00000025154	Arhgap19	4933411B03Rik|AI120128|AW546831|mFLJ00368	Rho GTPase activating protein 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86677551-4	chr17	86677031	86678031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-76333.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	2.0	3.5	2.0	1.5	2.0	3.5
Merged-chr4-119978051-4	chr4	119977567	119978567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	163389.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	59.0	111.0	80.0	58.5	117.0	100.5
Merged-chr15-79694655-4	chr15	79694168	79695168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013818, intron 2 of 11)	intron (NM_013818, intron 2 of 11)	3772.0	NM_013818	14904.0	Mm.19080	NM_013818	ENSMUSG00000042535	Gtpbp1	AL022987|AW045683|C85212|GP-1|Gtpbp	GTP binding protein 1	protein-coding	22.5	19.0	24.0	7.5	19.0	20.0
Merged-chr11-51584154-2	chr11	51583654	51584654	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028398)	promoter-TSS (NM_028398)	-603.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-15285107-4	chr3	15284660	15285660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47142.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	73.0	129.5	107.5	74.5	115.5	118.5
Merged-chr6-50110134-4	chr6	50109625	50110625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164734)	promoter-TSS (NM_001164734)	-116.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-32587655-2	chr6	32587155	32588155	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175750, exon 1 of 32)	5' UTR (NM_175750, exon 1 of 32)	537.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	6.0	1.0	0.0	0.0	1.5	2.0
Merged-chr7-45525482-4	chr7	45525034	45526034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148927)	promoter-TSS (NM_148927)	734.0	NM_008654	17872.0	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-42490584-2	chr7	42490084	42491084	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001309388, intron 2 of 6)	intron (NM_001309388, intron 2 of 6)	15169.0	NM_001309389	434178.0	Mm.333810	NM_001309388	ENSMUSG00000092416	Zfp141	-	zinc finger protein 141	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101383932-4	chr7	101383427	101384427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040112, intron 1 of 30)	intron (NM_001040112, intron 1 of 30)	-1599.0	NM_027180	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	17.0	106.5	41.5	19.0	59.0	32.0
Merged-chr2-168590461-3	chr2	168590019	168591019	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136073)	promoter-TSS (NM_001136073)	-154.0	NM_001136073	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65958256-4	chr3	65957749	65958749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355432)	promoter-TSS (NM_001355432)	0.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37430102-4	chr1	37429570	37430570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356528)	promoter-TSS (NM_001356528)	33.0	NM_198006	76178.0	Mm.28085	NM_198006	ENSMUSG00000026112	Coa5	1700001A24Rik|6330578E17Rik|Pet191	cytochrome C oxidase assembly factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141957931-4	chr4	141957415	141958415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 9 of 31)	intron (NM_177868, intron 9 of 31)	-25077.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146135102-4	chr3	146134612	146135612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134160, intron 8 of 11)	intron (NM_134160, intron 8 of 11)	13321.0	NM_134160	171166.0	Mm.114683	NM_134160	ENSMUSG00000036853	Mcoln3	6720490O21Rik|TRPML3|Va	mucolipin 3	protein-coding	0.0	0.0	6.0	1.5	0.0	4.0
Merged-chr2-80524454-4	chr2	80523939	80524939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355411, intron 19 of 30)	intron (NM_001355411, intron 19 of 30)	56743.0	NM_001290745	50884.0	Mm.25203	NM_016965	ENSMUSG00000027002	Nckap1	C79304|H19|Hem-2|Hem2|Nap1|mKIAA0587|mh19|p125Nap1	NCK-associated protein 1	protein-coding	6.5	0.0	4.0	4.0	1.5	0.5
Merged-chr4-111719942-4	chr4	111719435	111720435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026470)	promoter-TSS (NM_026470)	-75.0	NM_026470	67946.0	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding	16.5	60.5	17.5	32.5	33.0	26.5
Merged-chr6-124730021-4	chr6	124729517	124730517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077705, intron 3 of 15)	intron (NM_001077705, intron 3 of 15)	3137.0	NM_013545	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180403892-4	chr1	180403380	180404380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-73331.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121374817-4	chr10	121374311	121375311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 3 of 13)	intron (NM_029364, intron 3 of 13)	9721.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	39.0	98.0	96.5	37.5	117.0	103.0
Merged-chr15-64306326-4	chr15	64305833	64306833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	6340.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128223299-2	chr8	128222799	128223799	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	54926.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167920572-2	chr2	167920072	167921072	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11755.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65524153-4	chr9	65523636	65524636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55951.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102267476-8	chr7	102266952	102267952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009287)	promoter-TSS (NM_009287)	-372.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	5.5	36.5	21.5	5.5	41.5	27.0
Merged-chr6-122598009-6	chr6	122597403	122598403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134391, intron 2 of 7)	ID_B1|SINE|B4	4541.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	21.0	48.5	33.0	21.0	48.5	33.0
Merged-chr8-84661708-4	chr8	84661216	84662216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010499, exon 1 of 1)	3' UTR (NM_010499, exon 1 of 1)	1136.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	76.5	184.5	119.0	125.5	176.0	114.5
Merged-chr7-44895948-7	chr7	44895445	44896445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027376)	promoter-TSS (NM_027376)	-134.0	NM_027376	70300.0	Mm.276298	NM_027376	ENSMUSG00000011658	Fuz	2600013E07Rik|b2b1273Clo	fuzzy planar cell polarity protein	protein-coding	9.0	23.0	7.0	0.0	8.0	0.5
Merged-chr4-19895344-4	chr4	19894838	19895838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175406, intron 2 of 7)	intron (NM_175406, intron 2 of 7)	27228.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-99168198-4	chr11	99167700	99168700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13123.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86527177-3	chr6	86526666	86527666	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011865)	promoter-TSS (NM_011865)	-164.0	NR_037960	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-59440924-4	chr14	59440417	59441417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001320725)	promoter-TSS (NM_001320725)	-37.0	NM_001320721	239122.0	Mm.205022	NM_001081024	ENSMUSG00000071350	Setdb2	Clld8|Gm293|KMT1F	SET domain, bifurcated 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99460007-4	chr10	99459528	99460528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-149143.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105827341-4	chr8	105826873	105827873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024445)	promoter-TSS (NM_024445)	-23.0	NM_145824	74334.0	Mm.4206	NM_145824	ENSMUSG00000037415	Ranbp10	4432417N03Rik	RAN binding protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-63935746-2	chr7	63935198	63936198	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	3217.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	5.0	10.5	8.5	5.5	33.5	8.5
Merged-chr1-192136713-4	chr1	192136221	192137221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033536)	promoter-TSS (NR_033536)	-177.0	NR_033536	100038712.0	Mm.474908	NR_033536	ENSMUSG00000097316	Gm10516	-	predicted gene 10516	ncRNA	9.5	11.5	10.0	9.5	12.0	13.0
Merged-chr2-92183259-6	chr2	92182757	92183757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346704)	promoter-TSS (NM_001346704)	-925.0	NM_138755	192285.0	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1	PHD finger protein 21A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-9087444-3	chr5	9086954	9087954	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-13283.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-70215018-4	chr10	70214502	70215502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304739, intron 1 of 2)	intron (NM_001304739, intron 1 of 2)	10338.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-140794251-8	chr2	140793757	140794757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 3 of 18)	RMER17C2|LTR|ERVK	-122781.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3919722-2	chr12	3919222	3920222	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27978.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-100685685-8	chr3	100685160	100686160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010763)	promoter-TSS (NM_010763)	-187.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	19.0	26.0	20.0	19.0	25.0	18.0
Merged-chr12-76533653-5	chr12	76533229	76534229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_039597)	promoter-TSS (NR_039597)	169.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116682447-4	chr6	116681943	116682943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8607.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-78536968-4	chr14	78536481	78537481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164503)	promoter-TSS (NM_001164503)	-121.0	NM_001164503	219181.0	Mm.89413	NM_001164503	ENSMUSG00000022016	Akap11	6330501D17Rik|AKAP220|Gm80|PRKA11|mKIAA0629	A kinase (PRKA) anchor protein 11	protein-coding	0.0	1.5	0.0	0.0	3.5	0.5
Merged-chr6-97442813-4	chr6	97442319	97443319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	B1_Mur1|SINE|Alu	16467.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50836132-3	chr6	50835641	50836641	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60026.0	NR_045984	319981.0	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24802543-4	chr13	24802072	24803072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_024473, exon 1 of 5)	5' UTR (NM_024473, exon 1 of 5)	915.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152029392-4	chr2	152028881	152029881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29515.0	NM_001164820	69698.0	Mm.258262	NM_027172	ENSMUSG00000027463	Slc52a3	2310046K01Rik|RFT2	solute carrier protein family 52, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34484634-4	chr1	34484133	34485133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13779.0	NM_009355	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49076509-4	chr11	49076011	49077011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271677)	promoter-TSS (NM_001271677)	-76.0	NM_001271677	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142938557-3	chr5	142938064	142939064	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21791.0	NM_007984	14086.0	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	5.0	12.5	0.5	1.5	0.0	0.5
Merged-chr2-30965785-4	chr2	30965281	30966281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144884, intron 2 of 4)	URR1A|DNA|hAT-Charlie	2137.0	NM_144884	30931.0	Mm.154994	NM_144884	ENSMUSG00000026849	Tor1a	DQ2|Dyt1|torsinA	torsin family 1, member A (torsin A)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19508563-6	chr7	19508049	19509049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177692)	promoter-TSS (NM_177692)	-121.0	NR_138583	67091.0	Mm.44213	NM_025960	ENSMUSG00000002043	Trappc6a	1810073E21Rik|4930519D19Rik|AI480686|TRS33|mhyp	trafficking protein particle complex 6A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-87074576-8	chr15	87074096	87075096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-469703.0	NM_001252310	106014.0	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	58.5	76.5	91.0	82.0	138.0	118.5
Merged-chr18-38250378-4	chr18	38249970	38250970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015475)	promoter-TSS (NR_015475)	95.0	NR_027904	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	22.5	19.0	20.0	5.5	26.0	18.5
Merged-chr10-43758385-4	chr10	43757882	43758882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040581, intron 1 of 3)	intron (NR_040581, intron 1 of 3)	12224.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	2.0	7.0	3.5	0.5	4.0	12.0
Merged-chr3-18050073-2	chr3	18049573	18050573	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4252.0	NM_021560	59058.0	Mm.149938	NM_021560	ENSMUSG00000025128	Bhlhe22	Beta3|Beta3a|Bhlhb5	basic helix-loop-helix family, member e22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150035504-4	chr4	150034999	150035999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26476.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-140195593-2	chr2	140195093	140196093	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027093, intron 8 of 10)	intron (NM_027093, intron 8 of 10)	24947.0	NM_027093	69487.0	Mm.287921	NM_027093	ENSMUSG00000027384	Ndufaf5	2310003L22Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4855173-4	chr19	4854691	4855691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019861)	promoter-TSS (NM_019861)	62.0	NM_019861	56464.0	Mm.29561	NM_019861	ENSMUSG00000083282	Ctsf	AI481912	cathepsin F	protein-coding	7.0	34.0	20.5	17.0	23.0	23.5
Merged-chr15-88517939-2	chr15	88517439	88518439	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82363.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124917316-4	chr6	124916815	124917815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152158, intron 1 of 1)	(CGGGG)n|Simple_repeat|Simple_repeat	452.0	NR_152158	442825.0	Mm.446713	NR_152158	ENSMUSG00000055818	A230083G16Rik	-	RIKEN cDNA A230083G16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35263713-4	chr17	35263228	35264228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267808, intron 6 of 11)	CpG-6316	605.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	251.5	417.0	319.0	111.5	185.5	138.0
Merged-chr8-83749500-1	chr8	83749000	83750000	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-8189.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	134.5	396.0	304.0	146.5	455.0	281.0
Merged-chr7-45801575-4	chr7	45801083	45802083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005511, intron 15 of 15)	intron (NM_001005511, intron 15 of 15)	12733.0	NM_011181	19158.0	Mm.272130	NM_011181	ENSMUSG00000003269	Cyth2	ARNO|CLM2|Pscd2	cytohesin 2	protein-coding	4.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55528597-4	chr13	55528109	55529109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013739)	promoter-TSS (NM_013739)	-71.0	NM_013739	27261.0	Mm.33910	NM_013739	ENSMUSG00000035711	Dok3	AI450713|Dokl	docking protein 3	protein-coding	1.0	0.0	1.5	3.0	12.5	18.0
Merged-chr6-29198749-4	chr6	29198266	29199266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13531.0	NM_011829	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-24137460-2	chr1	24137038	24138038	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37197.0	NM_026604	68187.0	Mm.87130	NM_026604	ENSMUSG00000026153	Fam135a	4921533L14Rik|AI256732|AI835491	family with sequence similarity 135, member A	protein-coding	3.0	2.0	0.0	0.0	0.5	0.5
Merged-chr1-65113691-4	chr1	65113187	65114187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175293, intron 5 of 7)	intron (NM_175293, intron 5 of 7)	9527.0	NM_175293	98303.0	Mm.348057	NM_175293	ENSMUSG00000044816	D630023F18Rik	AI314969	RIKEN cDNA D630023F18 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34855446-4	chr18	34854946	34855946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5761.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108894377-4	chr8	108893820	108894820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 4 of 9)	intron (NM_007496, intron 4 of 9)	-42540.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	9.0	12.0	21.5	9.0	11.0	21.5
Merged-chr14-52279106-1	chr14	52278606	52279606	+	1000.0	f0_c57.idr	promoter-TSS (NM_023434)	promoter-TSS (NM_023434)	-40.0	NM_023434	268741.0	Mm.246237	NM_023434	ENSMUSG00000016831	Tox4	5730589K01Rik|A630040M18|AA410149|LCP1	TOX high mobility group box family member 4	protein-coding	55.0	135.0	112.0	36.0	124.0	65.0
Merged-chr3-31057475-4	chr3	31056982	31057982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18516.0	NR_105975	102465610.0		NR_105975	ENSMUSG00000098890	Mir7008	Gm27752|mmu-mir-7008	microRNA 7008	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117996894-4	chr2	117996379	117997379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	114323.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	59.0	152.0	113.5	165.5	266.5	176.5
Merged-chr13-55469954-2	chr13	55469454	55470454	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001030296, intron 1 of 2)	(TGG)n|Simple_repeat|Simple_repeat	5687.0	NM_001030296	432763.0	Mm.315457	NM_001030296	ENSMUSG00000034686	Prr7	XM_484263	proline rich 7 (synaptic)	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr7-29983788-4	chr7	29983303	29984303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167873)	promoter-TSS (NM_001167873)	-152.0	NM_001167873	243905.0	Mm.322432	NM_001033355	ENSMUSG00000074221	Zfp568	C80731|Gm1691|Znf568|chato	zinc finger protein 568	protein-coding	23.0	90.0	98.0	172.5	338.0	230.5
Merged-chr3-55112124-4	chr3	55111670	55112670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144895)	promoter-TSS (NM_144895)	4.0	NM_001144987	229285.0	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|Spart|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80160994-4	chr10	80160493	80161493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-6846.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-26997252-4	chr9	26996768	26997768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025862, intron 1 of 10)	ORR1A4|LTR|ERVL-MaLR	2281.0	NM_025862	66948.0	Mm.289244	NM_025862	ENSMUSG00000031969	Acad8	2310016C19Rik|AI786953	acyl-Coenzyme A dehydrogenase family, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110176875-4	chr5	110176393	110177393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008146)	promoter-TSS (NM_008146)	36.0	NM_008146	269682.0	Mm.9392	NM_008146	ENSMUSG00000029502	Golga3	5330413L04|5430416E01Rik|AI449376|AW490576|G1-499-14|Mea-2|Mea2|Mea2/Golga3|repro27	golgi autoantigen, golgin subfamily a, 3	protein-coding	74.0	175.0	156.5	94.5	210.0	171.5
Merged-chr4-71291985-4	chr4	71291490	71292490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR3-int|LTR|ERVK	-757062.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27198591-4	chr7	27198071	27199071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290513, intron 2 of 7)	PB1D7|SINE|Alu	-2300.0	NM_001285825	53607.0	Mm.386890	NM_015782	ENSMUSG00000061479	Snrpa	C430021M15Rik|Rnu1a-1|Rnu1a1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding	5.0	15.0	12.5	4.5	37.0	15.5
Merged-chr18-61726331-4	chr18	61725817	61726817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021296)	promoter-TSS (NM_021296)	14.0	NM_021296	17714.0	Mm.269657	NM_021296	ENSMUSG00000024580	Grpel2	mt-GrpE#2|mt-Grpel2	GrpE-like 2, mitochondrial	protein-coding	105.5	252.5	193.0	112.0	196.0	139.0
Merged-chr4-35157475-4	chr4	35156968	35157968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178061)	promoter-TSS (NM_178061)	16.0	NM_178061	214944.0	Mm.32968	NM_178061	ENSMUSG00000073910	Mob3b	8430436F23Rik|A430018A01Rik|Mobkl2b	MOB kinase activator 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102722196-4	chr15	102721674	102722674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026192)	promoter-TSS (NM_026192)	4.0	NM_026192	67488.0	Mm.71682	NM_026192	ENSMUSG00000023055	Calcoco1	1810009B06Rik|Cocoa|Gcap11|mKIAA1536	calcium binding and coiled coil domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76962360-4	chr12	76961846	76962846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146176)	promoter-TSS (NM_001146176)	-98.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81136987-4	chr10	81136516	81137516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010731, intron 1 of 2)	CpG	745.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115277128-4	chr11	115276654	115277654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007997)	promoter-TSS (NM_007997)	-185.0	NM_007997	14149.0	Mm.4719	NM_007997	ENSMUSG00000018861	Fdxr	AR	ferredoxin reductase	protein-coding	3.5	15.5	5.5	3.5	11.0	7.5
Merged-chr11-50212126-4	chr11	50211628	50212628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1308.0	NM_011018	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-9748497-4	chr1	9747994	9748994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173443)	promoter-TSS (NM_173443)	-112.0	NM_173443	70675.0	Mm.274493	NM_173443	ENSMUSG00000045210	Vcpip1	4932442A08|5730421J18Rik|5730538E15Rik|VCIP135|mKIAA1850	valosin containing protein (p97)/p47 complex interacting protein 1	protein-coding	2.5	2.5	10.0	2.0	5.0	4.0
Merged-chr4-62408730-4	chr4	62408220	62409220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027297)	promoter-TSS (NM_027297)	-63.0	NM_027297	70052.0	Mm.30660	NM_027297	ENSMUSG00000066148	Prpf4	1600015H11Rik|AI874830|AW047464|bN189G18.1	pre-mRNA processing factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46857286-4	chr17	46856793	46857793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-25880.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105971935-4	chr1	105971420	105972420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18362.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	52.5	169.0	110.5	80.0	184.5	133.0
Merged-chr6-39076727-4	chr6	39076228	39077228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 10 of 12)	intron (NM_011539, intron 10 of 12)	-9142.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108446344-4	chr6	108445835	108446835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-43408.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73937835-4	chr13	73937341	73938341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027182)	promoter-TSS (NM_027182)	30.0	NM_001308041	105246.0	Mm.278509	NM_001024508	ENSMUSG00000057649	Brd9	AL022779	bromodomain containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170321640-4	chr2	170321138	170322138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34723.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-157933704-1	chr3	157933204	157934204	+	1000.0	f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	-8641.0	NM_145953	107869.0	Mm.28301	NM_145953	ENSMUSG00000028179	Cth	0610010I13Rik|AI314617|BC019483|CSE|Cys3	cystathionase (cystathionine gamma-lyase)	protein-coding	4.0	7.5	1.5	2.5	3.5	3.0
Merged-chr11-61533852-4	chr11	61533363	61534363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252188, intron 5 of 10)	intron (NM_001252188, intron 5 of 10)	28719.0	NM_001330781	27078.0	Mm.261226	NM_013717	ENSMUSG00000001039	B9d1	AW045994|B9|Eppb9	B9 protein domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-43849395-4	chr6	43848893	43849893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-183115.0	NM_001311111	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42170574-4	chr19	42170103	42171103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177319)	promoter-TSS (NM_177319)	36.0	NM_001164531	319740.0	Mm.287359	NM_177319	ENSMUSG00000018820	Zfyve27	2210011N02Rik|9530077C24Rik|AI426636|AI593546|AI835681	zinc finger, FYVE domain containing 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94434311-4	chr8	94433799	94434799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015514, exon 2 of 3)	non-coding (NR_015514, exon 2 of 3)	804.0	NR_015514	320377.0	Mm.486022	NR_015514		9330175E14Rik	A630085K21	RIKEN cDNA 9330175E14 gene	ncRNA	1.5	18.5	7.0	8.5	10.0	3.0
Merged-chr11-116146265-4	chr11	116145760	116146760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172571, intron 26 of 30)	intron (NM_172571, intron 26 of 30)	-7392.0	NM_024177	60441.0	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	14.5	16.5	17.5	20.0	17.5	32.5
Merged-chr5-123039199-4	chr5	123038670	123039670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029112, intron 3 of 4)	intron (NM_029112, intron 3 of 4)	7846.0	NM_029112	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	13.0	33.5	30.5	10.0	9.0	10.0
Merged-chr15-79774530-4	chr15	79774050	79775050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017470)	promoter-TSS (NM_017470)	-83.0	NM_017470	54152.0	Mm.288159	NM_017470	ENSMUSG00000022420	Dnal4	D15Ertd424e|Dnalc4	dynein, axonemal, light chain 4	protein-coding	48.5	89.5	85.5	29.5	131.0	66.0
Merged-chr11-109417672-4	chr11	109417143	109418143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8303.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	2.5	26.5	10.0	2.5	17.5	14.0
Merged-chr6-72162374-4	chr6	72161887	72162887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39190.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50252878-4	chr6	50252365	50253365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018769, intron 1 of 9)	MLTR11B|LTR|ERVK	8904.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-192092588-4	chr1	192092089	192093089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011633)	promoter-TSS (NM_011633)	10.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11340496-4	chr8	11339999	11340999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009932, intron 3 of 47)	intron (NM_009932, intron 3 of 47)	-27673.0	NM_009931	12826.0	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94857460-4	chr8	94856966	94857966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009090)	promoter-TSS (NM_009090)	16.0	NM_009090	20021.0	Mm.292492	NM_009090	ENSMUSG00000031783	Polr2c	33kDa|RPB3|Rpo2-3|mRBP31	polymerase (RNA) II (DNA directed) polypeptide C	protein-coding	3.5	6.5	13.0	7.5	12.0	7.5
Merged-chr8-94187514-4	chr8	94187012	94188012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8423.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-99177146-4	chr4	99176637	99177637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16797.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	87.0	270.5	209.5	121.5	359.0	248.5
Merged-chr6-31284628-4	chr6	31284143	31285143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040262, intron 2 of 5)	intron (NR_040262, intron 2 of 5)	64292.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-59185485-4	chr6	59184986	59185986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23384.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-78226443-4	chr12	78225933	78226933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145965)	promoter-TSS (NM_145965)	-222.0	NM_172952	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40279442-4	chr4	40278934	40279934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033305)	promoter-TSS (NM_001033305)	-13.0	NM_001033305	230075.0	Mm.1103	NM_001033305	ENSMUSG00000071014	Ndufb6	CI-B17|Gm137	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-68392746-4	chr8	68392230	68393230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172753, intron 5 of 9)	intron (NM_172753, intron 5 of 9)	24271.0	NR_038181	73609.0	Mm.443247	NR_038181	ENSMUSG00000085197	1700125H03Rik	4930510D22Rik	RIKEN cDNA 1700125H03 gene	ncRNA	3.5	22.5	5.0	7.5	4.0	7.5
Merged-chr7-114292130-4	chr7	114291627	114292627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16011.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	31.0	99.0	65.5	54.0	99.0	63.5
Merged-chr13-9094345-4	chr13	9093855	9094855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 1 of 17)	(CGGGG)n|Simple_repeat|Simple_repeat	474.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-82859658-4	chr4	82859141	82860141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026647)	promoter-TSS (NM_026647)	32.0	NR_149737	68268.0	Mm.32047	NM_026647	ENSMUSG00000028403	Zdhhc21	9130404H11Rik|AL024349|D130004H04Rik|dep	zinc finger, DHHC domain containing 21	protein-coding	7.0	8.5	4.0	1.0	7.0	0.0
Merged-chr16-45742912-4	chr16	45742412	45743412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001272070)	promoter-TSS (NM_001272070)	43.0	NM_001272070	213012.0	Mm.247453	NM_172511	ENSMUSG00000033157	Abhd10	-	abhydrolase domain containing 10	protein-coding	79.5	147.0	148.0	88.5	196.0	190.0
Merged-chr11-94521467-4	chr11	94520965	94521965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170671)	promoter-TSS (NM_170671)	37.0	NM_170671	104601.0	Mm.84725	NM_170671	ENSMUSG00000039110	Mycbpap	4932408B01Rik|AMAP-1|AW125474	MYCBP associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6870968-4	chr19	6870470	6871470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4A|LTR|ERVK	-12759.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191458471-4	chr1	191457965	191458965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151615, intron 2 of 5)	B3|SINE|B2	6583.0	NR_151615	102634668.0		NR_151615		Gm32200	-	predicted gene, 32200	ncRNA	2.5	11.0	6.5	11.5	6.5	11.0
Merged-chr10-60934511-4	chr10	60934019	60935019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033616, intron 1 of 2)	intron (NR_033616, intron 1 of 2)	3613.0	NR_033616	73616.0	Mm.159038	NR_033616	ENSMUSG00000037247	Pldi	1700125F08Rik|Poldi	polymorphic derived intron containing	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165982703-4	chr2	165982202	165983202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9935.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45563388-3	chr17	45562877	45563877	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357105)	promoter-TSS (NM_001357105)	-559.0	NM_001357105	73836.0	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10297499-2	chr19	10296999	10297999	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	7378.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	0.0	8.0	0.0	0.0	2.5	0.0
Merged-chr9-61705810-4	chr9	61705318	61706318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	208692.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-105131807-4	chr9	105131317	105132317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029385)	promoter-TSS (NM_029385)	-12.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	89.5	306.0	172.0	146.0	301.5	219.5
Merged-chr19-43524644-4	chr19	43524127	43525127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010324)	promoter-TSS (NM_010324)	-22.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	44.0	127.0	84.0	32.0	62.0	77.5
Merged-chr4-153975134-4	chr4	153974665	153975665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007859)	promoter-TSS (NM_007859)	-84.0	NM_007859	13368.0	Mm.388918	NM_007859	ENSMUSG00000029027	Dffb	40kDa|5730477D02Rik|CAD|CPAN|DFF40|Didff	DNA fragmentation factor, beta subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152138697-4	chr4	152138190	152139190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207687, intron 4 of 15)	CpG	-2365.0	NM_207690	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-3744472-1	chr16	3743972	3744972	+	1000.0	f0_balb.idr	exon (NM_148924, exon 1 of 6)	exon (NM_148924, exon 1 of 6)	373.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-92274657-4	chr13	92274142	92275142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311120, intron 14 of 23)	intron (NM_001311120, intron 14 of 23)	-80141.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	0.0	0.0	0.0	0.0	0.5	1.0
Merged-chr3-121548268-4	chr3	121547753	121548753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15909.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50696124-4	chr15	50695588	50696588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	192961.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	5.5	10.5	10.0	6.5	16.0	11.0
Merged-chr7-28442962-4	chr7	28442462	28443462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039192, intron 3 of 6)	intron (NM_001039192, intron 3 of 6)	2025.0	NM_001039192	63986.0	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-67382531-4	chr1	67382025	67383025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3b|LINE|CR1	259498.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134172540-4	chr6	134172041	134173041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	MTD|LTR|ERVL-MaLR	136841.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	25.0	44.5	33.5	41.0	47.0	45.5
Merged-chr12-75853713-4	chr12	75853216	75854216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005510, intron 1 of 115)	intron (NM_001005510, intron 1 of 115)	35398.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132265395-4	chr2	132264902	132265902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291040, intron 1 of 3)	intron (NM_001291040, intron 1 of 3)	2254.0	NM_138651	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112801210-2	chr12	112800710	112801710	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7765.0	NM_145450	217887.0	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Clba1|Flj20080	cDNA sequence BC022687	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-12922227-4	chr7	12921736	12922736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009095)	promoter-TSS (NM_009095)	-75.0	NM_009095	20103.0	Mm.5291	NM_009095	ENSMUSG00000012848	Rps5	AA617411	ribosomal protein S5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-17176878-4	chr19	17176396	17177396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181348, intron 10 of 19)	A-rich|Low_complexity|Low_complexity	162609.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	5.0	29.5	9.0	14.0	5.5	9.5
Merged-chr17-88284649-4	chr17	88284137	88285137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-156067.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31113007-4	chr6	31112503	31113503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	(CA)n|Simple_repeat|Simple_repeat	-49910.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-114078189-4	chr13	114077692	114078692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 4 of 4)	intron (NM_172595, intron 4 of 4)	73400.0	NR_045836	319803.0	Mm.386896	NM_177004	ENSMUSG00000114213	A430090L17Rik	-	RIKEN cDNA A430090L17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35187682-4	chr9	35187168	35188168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001177847, exon 7 of 7)	3' UTR (NM_001177847, exon 7 of 7)	-11681.0	NM_027030	69305.0	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	13.5	28.5	10.0	2.5	29.5	12.0
Merged-chr8-66405956-4	chr8	66405475	66406475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 5 of 7)	intron (NM_175188, intron 5 of 7)	19674.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-41417114-4	chr8	41416600	41417600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013522)	promoter-TSS (NM_013522)	18.0	NM_013522	14300.0	Mm.217312	NM_013522	ENSMUSG00000031590	Frg1	-	FSHD region gene 1	protein-coding	58.0	136.0	112.0	59.0	142.0	107.0
Merged-chr10-52382540-4	chr10	52382024	52383024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199272)	promoter-TSS (NM_001199272)	-400.0	NM_001199272	94221.0	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77983709-4	chr11	77983216	77984216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174852, intron 1 of 14)	intron (NM_174852, intron 1 of 14)	900.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20878937-2	chr9	20878437	20879437	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145154, intron 1 of 5)	intron (NM_145154, intron 1 of 5)	773.0	NM_145154	70726.0	Mm.34019	NM_145154	ENSMUSG00000038742	Angptl6	6330404E11Rik|AGF|ARP3|Arp5	angiopoietin-like 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59221856-4	chr10	59221256	59222256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172939)	promoter-TSS (NM_172939)	91.0	NM_001024911	103080.0	Mm.346842	NM_001024910	ENSMUSG00000019917	Sept10	4921515A04Rik|9430099J10Rik|AA408298|AI874685	septin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25100864-1	chr12	25100364	25101364	+	1000.0	f0_c57.idr	Intergenic	CpG	-4772.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	104.5	191.0	198.0	88.5	256.0	238.5
Merged-chr5-35582940-4	chr5	35582455	35583455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357020)	promoter-TSS (NM_001357020)	-79.0	NM_001357020	80911.0	Mm.291503	NM_030721	ENSMUSG00000029098	Acox3	BI685180|EST-s59|PCOX	acyl-Coenzyme A oxidase 3, pristanoyl	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-78576111-4	chr16	78575599	78576599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252440, intron 1 of 4)	intron (NM_001252440, intron 1 of 4)	589.0	NM_001252438	67102.0	Mm.37332	NM_025967	ENSMUSG00000022864	D16Ertd472e	1700010I10Rik|2310009O17Rik|E330003K22Rik|Eurl	DNA segment, Chr 16, ERATO Doi 472, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-15576651-4	chr3	15576140	15577140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1575.0	NM_001173460	668101.0	Mm.423523	NM_001173460	ENSMUSG00000095028	Sirpb1b	-	signal-regulatory protein beta 1B	protein-coding	30.5	41.5	70.5	26.0	69.0	46.5
Merged-chr8-23256016-5	chr8	23255516	23256516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020585, intron 1 of 4)	intron (NM_020585, intron 1 of 4)	1064.0	NM_020585	57437.0	Mm.196269	NM_020585	ENSMUSG00000015341	Golga7	AB041568|C130038N16Rik|GCP16|GOLGA3AP1|HSPC041|R75586	golgi autoantigen, golgin subfamily a, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34207290-4	chr10	34206743	34207743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172508, exon 1 of 6)	5' UTR (NM_172508, exon 1 of 6)	308.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84167758-4	chr15	84167259	84168259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105816)	promoter-TSS (NR_105816)	-57.0	NM_054088	116939.0	Mm.390817	NM_054088	ENSMUSG00000041653	Pnpla3	Adpn	patatin-like phospholipase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79834339-4	chr15	79833804	79834804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028763)	promoter-TSS (NM_028763)	29.0	NM_001013360	504193.0	Mm.38438	NM_029079	ENSMUSG00000089837	Npcd	Cbx6-Nptxr	neuronal pentraxin chromo domain	protein-coding	1.5	0.0	0.5	1.5	0.0	0.0
Merged-chr11-84117579-4	chr11	84117086	84118086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172562, intron 4 of 15)	ORR1D1|LTR|ERVL-MaLR	11982.0	NM_172562	217031.0	Mm.45159	NM_172562	ENSMUSG00000018651	Tada2a	AV319371|D030022J10Rik|Tada2l	transcriptional adaptor 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-38460150-2	chr3	38459650	38460650	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167883, intron 3 of 3)	intron (NM_001167883, intron 3 of 3)	24666.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141874963-4	chr4	141874464	141875464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025994)	promoter-TSS (NM_025994)	-44.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	56.5	130.0	106.0	38.0	138.5	79.0
Merged-chr10-75514455-4	chr10	75513955	75514955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347201, intron 1 of 5)	MTE2a|LTR|ERVL-MaLR	2926.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107744317-4	chr9	107743825	107744825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_148930, exon 21 of 25)	exon (NM_148930, exon 21 of 25)	26677.0	NM_148930	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	9.0	33.5	31.5	10.0	35.5	30.5
Merged-chr18-84804603-1	chr18	84804103	84805103	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-46735.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25614907-4	chr14	25614409	25615409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 6 of 23)	intron (NM_183208, intron 6 of 23)	11396.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	0.0	0.0	4.5	0.0	0.0	0.5
Merged-chr17-57344170-4	chr17	57343665	57344665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14521.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27938542-4	chr17	27938054	27939054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	29248.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	15.5	93.0	28.0	7.5	77.0	46.0
Merged-chr10-13967475-4	chr10	13966990	13967990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	CpG-904	1111.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	24.0	26.5	23.0	6.5	31.0	17.0
Merged-chr5-43868879-4	chr5	43868355	43869355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007646)	promoter-TSS (NM_007646)	46.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	139.0	304.0	240.5	83.0	163.5	156.0
Merged-chr8-31168341-1	chr8	31167841	31168841	+	1000.0	f1_balb.idr	intron (NM_026453, intron 1 of 9)	intron (NM_026453, intron 1 of 9)	383.0	NM_026453	67920.0	Mm.289818	NM_026453	ENSMUSG00000031578	Mak16	2600016B03Rik|AI314911|Rbm13	MAK16 homolog	protein-coding	29.5	19.0	37.0	11.0	42.0	29.0
Merged-chr1-71974925-4	chr1	71974425	71975425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040454, intron 1 of 2)	intron (NR_040454, intron 1 of 2)	30270.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96363794-4	chr9	96363277	96364277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357213)	promoter-TSS (NM_001357213)	-62.0	NM_001357213	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	29.0	120.0	88.5	19.5	133.5	74.5
Merged-chr17-39843716-2	chr17	39843217	39844217	+	1000.0	f0_balb.idr|f0_c57.idr	non-coding (NR_046233, exon 1 of 1)	non-coding (NR_046233, exon 1 of 1)	720.0	NR_046233	100861531.0		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61682366-4	chr14	61681899	61682899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028264)	promoter-TSS (NR_028264)	-26.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46508389-3	chr4	46507894	46508894	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029077, intron 5 of 5)	intron (NM_029077, intron 5 of 5)	19065.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	0.0	2.5	11.0	2.0	4.0	4.5
Merged-chr15-27665277-2	chr15	27664777	27665777	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	16265.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-118465516-2	chr5	118465016	118466016	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95203.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32246455-2	chr16	32245955	32246955	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001185162)	promoter-TSS (NM_001185162)	570.0	NM_173439	268882.0	Mm.256137	NM_173439	ENSMUSG00000035764	Fbxo45	2610017J04Rik|AI463119|BC026799	F-box protein 45	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40349836-4	chr10	40349336	40350336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291816, intron 1 of 11)	CpG	528.0	NM_001291816	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57746460-4	chr10	57745963	57746963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38460.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86570442-4	chr11	86569937	86570937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13721.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-60158598-4	chr1	60158086	60159086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-22013.0	NM_173444	269198.0	Mm.205224	NM_173444	ENSMUSG00000073664	Nbeal1	2310076G13Rik|A530050O19Rik|A530083I02Rik|AI662228|ALS2CR17	neurobeachin like 1	protein-coding	5.0	8.5	5.0	4.5	0.5	2.5
Merged-chr13-56334998-4	chr13	56334487	56335487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27913.0	NR_046061	100038494.0	Mm.370447	NR_046061	ENSMUSG00000074885	Gm10782	-	predicted gene 10782	ncRNA	0.0	14.0	5.0	2.0	26.0	14.5
Merged-chr3-65188026-4	chr3	65187516	65188516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289450)	promoter-TSS (NM_001289450)	-87.0	NM_001289450	16497.0	Mm.316402	NM_010597	ENSMUSG00000027827	Kcnab1	Akr8a8|Kvbeta1.1|mKv(beta)1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63178047-4	chr14	63177558	63178558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360211)	promoter-TSS (NM_001360211)	-171.0	NM_001360211	14137.0	Mm.474432	NM_010191	ENSMUSG00000021273	Fdft1	SQS|SS	farnesyl diphosphate farnesyl transferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31356675-4	chr6	31356150	31357150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42123.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43788564-4	chr5	43788079	43789079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6430.0	NM_178729	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	6.5	0.0	0.0	1.0	8.5	2.5
Merged-chr5-115506624-4	chr5	115506138	115507138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133915)	promoter-TSS (NM_133915)	-38.0	NM_011223	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	6.0	5.5	14.0	11.0	26.0	9.5
Merged-chr14-31593222-4	chr14	31592704	31593704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15821.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16018513-6	chr7	16017951	16018951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-18956.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	57.5	110.5	65.0	43.5	87.5	96.5
Merged-chr10-30621273-2	chr10	30620773	30621773	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2907.0	NM_025798	66847.0	Mm.46218	NM_025798	ENSMUSG00000019791	Hint3	0610010I17Rik|AV009015|HINT-3|HINT-4|HINT4	histidine triad nucleotide binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36668921-2	chr18	36668421	36669421	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025291, intron 2 of 4)	intron (NM_025291, intron 2 of 4)	1390.0	NM_001164406	24068.0	Mm.29058	NM_025291	ENSMUSG00000006050	Sra1	AA959952|Sra|Srap|Straa1|Strra1	steroid receptor RNA activator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53944398-4	chr18	53943893	53944893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152809, intron 10 of 12)	intron (NM_152809, intron 10 of 12)	82280.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	4.5	1.0	2.0	2.0	20.0	1.5
Merged-chr5-74195196-4	chr5	74194703	74195703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026878)	promoter-TSS (NM_026878)	-123.0	NM_026878	68939.0	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	0.0	4.0	4.0	0.0	1.0	3.0
Merged-chr3-14534342-4	chr3	14533843	14534843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163580, intron 1 of 18)	intron (NM_001163580, intron 1 of 18)	555.0	NM_001163580	71710.0	Mm.257449	NM_028915	ENSMUSG00000027550	Lrrcc1	1200008A14Rik|4932441F23Rik|AI195358|AI447421	leucine rich repeat and coiled-coil domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88142036-4	chr8	88141535	88142535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172757, intron 4 of 14)	intron (NM_172757, intron 4 of 14)	3829.0	NR_106039	102465649.0		NR_106039	ENSMUSG00000099080	Mir7071	Gm27623|mmu-mir-7071	microRNA 7071	ncRNA	24.0	54.0	21.5	16.0	34.5	27.0
Merged-chr11-120142769-4	chr11	120142289	120143289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361697, intron 1 of 15)	intron (NM_001361697, intron 1 of 15)	8562.0	NM_001361698	72055.0	Mm.253403	NM_024249	ENSMUSG00000061306	Slc38a10	1810073N04Rik	solute carrier family 38, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57796290-4	chr10	57795750	57796750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020561, intron 1 of 7)	intron (NM_020561, intron 1 of 7)	1706.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86399524-4	chr1	86399011	86400011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10150.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66577519-4	chr15	66577034	66578034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081409)	promoter-TSS (NM_001081409)	-38.0	NM_001081409	239510.0	Mm.267473	NM_178718	ENSMUSG00000072501	Phf20l1	CGI-72|E130113K22Rik	PHD finger protein 20-like 1	protein-coding	81.5	140.5	82.5	26.5	61.5	83.5
Merged-chr1-52233337-4	chr1	52232853	52233853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113383)	promoter-TSS (NM_001113383)	-121.0	NM_001113383	14660.0	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-75005059-2	chr17	75004559	75005559	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019919)	promoter-TSS (NM_019919)	-470.0	NM_019919	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70433791-4	chr11	70433294	70434294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145429, intron 1 of 14)	intron (NM_145429, intron 1 of 14)	1214.0	NM_001271358	216869.0	Mm.203747	NM_145429	ENSMUSG00000060216	Arrb2	AI326910|AW122872|Arr3	arrestin, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73474956-4	chr14	73474459	73475459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35090.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56935584-4	chr17	56935092	56936092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022328)	promoter-TSS (NM_022328)	-204.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80860419-4	chr7	80859948	80860948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1660.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	16.0	44.0	31.5	19.5	45.5	30.5
Merged-chr16-17402917-2	chr16	17402417	17403417	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001983, intron 1 of 54)	intron (NM_001001983, intron 1 of 54)	-3083.0	NM_023348	67474.0	Mm.271992	NM_023348	ENSMUSG00000022765	Snap29	1300018G05Rik|AI891940|AU020222|BB131856|Gs32	synaptosomal-associated protein 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134214593-4	chr5	134214094	134215094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359852, intron 13 of 14)	intron (NM_001359852, intron 13 of 14)	15031.0	NM_001286037	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-31997057-4	chr12	31996573	31997573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011158, intron 2 of 10)	MamRep605|LTR?|LTR?	-46828.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24413829-4	chr17	24413344	24414344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009070)	promoter-TSS (NM_009070)	669.0	NR_033554	654822.0	Mm.489806	NM_001039561	ENSMUSG00000073437	D330041H03Rik	-	RIKEN cDNA D330041H03 gene	ncRNA	107.5	298.5	171.0	87.0	215.0	114.5
Merged-chr14-63117668-4	chr14	63117179	63118179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-4783.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19086194-4	chr7	19085686	19086686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037282)	promoter-TSS (NR_037282)	-642.0	NR_037282	100526504.0		NR_037282	ENSMUSG00000092659	Mir3100	mir-3100|mmu-mir-3100	microRNA 3100	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50174786-4	chr11	50174306	50175306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026543)	promoter-TSS (NM_026543)	-45.0	NM_026543	68067.0	Mm.40828	NM_026543	ENSMUSG00000020381	Mrnip	2900016G09Rik|3010026O09Rik|AI851514|AW475975	MRN complex interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165634593-4	chr1	165634091	165635091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347128)	promoter-TSS (NM_001347128)	-50.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71259921-2	chr17	71259420	71260420	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_001357338, intron 4 of 7)	intron (NM_001357338, intron 4 of 7)	51091.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	4.0	7.0	5.5	15.0	40.5	46.5
Merged-chr18-34963641-4	chr18	34963137	34964137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9286.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	10.5	27.0	10.0	12.0	9.5	1.5
Merged-chr11-94687380-4	chr11	94686876	94687876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9883.0	NM_145828	217119.0	Mm.100638	NM_145828	ENSMUSG00000020868	Xylt2	E030002B02Rik|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding	5.5	2.0	2.0	5.5	2.0	2.0
Merged-chr18-38994061-2	chr18	38993561	38994561	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 1 of 21)	intron (NM_001361073, intron 1 of 21)	916.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8566219-2	chr11	8565719	8566719	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 4 of 30)	L1MC5|LINE|L1	98316.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	87.5	183.0	147.0	47.5	86.5	77.0
Merged-chr18-46406078-4	chr18	46405569	46406569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	59747.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	33.0	112.0	55.0	51.0	76.0	37.0
Merged-chr15-86201207-4	chr15	86200695	86201695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13264.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128818443-1	chr2	128817943	128818943	+	1000.0	f0_balb.idr	exon (NM_028248, exon 1 of 19)	exon (NM_028248, exon 1 of 19)	140.0	NM_001355629	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	111.5	198.0	117.0	81.0	157.0	132.0
Merged-chr19-60982077-4	chr19	60981546	60982546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	92297.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	2.5	0.0	0.0	0.0	1.5	3.0
Merged-chr10-59879573-4	chr10	59879092	59880092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019965)	promoter-TSS (NM_019965)	1.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25481080-4	chr14	25480582	25481582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	21897.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99441210-4	chr10	99440706	99441706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-167965.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80042359-4	chr15	80041850	80042850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27542.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	87.5	179.0	137.5	71.0	169.5	196.0
Merged-chr3-105959308-4	chr3	105958814	105959814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027432)	promoter-TSS (NM_027432)	-184.0	NM_027432	70465.0	Mm.5110	NM_027432	ENSMUSG00000000561	Wdr77	2610003I18Rik|2610312E17Rik|C79984|p44/MEP50	WD repeat domain 77	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-174327628-7	chr2	174327134	174328134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310083)	promoter-TSS (NM_001310083)	-134.0	NM_001310083	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	9.0	44.5	40.0	9.0	39.5	40.0
Merged-chr10-81192349-2	chr10	81191849	81192849	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190473, intron 8 of 8)	intron (NM_001190473, intron 8 of 8)	-2342.0	NR_015477	69678.0	Mm.81562	NR_015477		Atcayos	2310050B05Rik	ataxia, cerebellar, Cayman type, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102065278-4	chr7	102064804	102065804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286689)	promoter-TSS (NM_001286689)	-139.0	NM_001360748	75212.0	Mm.101141	NM_029211	ENSMUSG00000070426	Rnf121	4930544L10Rik	ring finger protein 121	protein-coding	12.5	15.0	7.0	7.5	12.5	9.5
Merged-chr2-129624262-1	chr2	129623762	129624762	+	1000.0	f1_c57bl6.idr	intron (NM_001355158, intron 7 of 8)	intron (NM_001355158, intron 7 of 8)	28800.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	6.5	5.5	2.5	7.5	4.0	4.5
Merged-chr18-39416918-4	chr18	39416417	39417417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008173, intron 6 of 7)	intron (NM_008173, intron 6 of 7)	70328.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	22.0	20.5	25.0	31.0	21.5	18.5
Merged-chr5-115282648-4	chr5	115282148	115283148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026504, intron 1 of 6)	intron (NM_026504, intron 1 of 6)	2946.0	NM_026504	52064.0	Mm.290142	NM_026504	ENSMUSG00000041733	Coq5	1810014G04Rik|D5Ertd33e	coenzyme Q5 methyltransferase	protein-coding	13.0	38.5	26.5	7.5	24.0	21.5
Merged-chr8-123027909-4	chr8	123027405	123028405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	14379.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	60.0	159.0	72.0	42.0	87.5	78.0
Merged-chr2-33918533-2	chr2	33918033	33919033	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-30587.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92934538-5	chr1	92934086	92935086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015525, exon 2 of 2)	non-coding (NR_015525, exon 2 of 2)	178.0	NM_011796	23830.0	Mm.294315	NM_011796	ENSMUSG00000026270	Capn10	AW049679|Capn8|mKIAA1845	calpain 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70657262-4	chr9	70656791	70657791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172772)	promoter-TSS (NM_172772)	-117.0	NM_172772	235461.0	Mm.170855	NM_172772	ENSMUSG00000042444	Mindy2	AI465301|B230380D07Rik|Fam63b|mKIAA1164	MINDY lysine 48 deubiquitinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-18595037-4	chr8	18594538	18595538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173189)	promoter-TSS (NM_173189)	-93.0	NM_173189	244329.0	Mm.235296	NM_173189	ENSMUSG00000039842	Mcph1	5430437K10Rik|BRIT1|D030046N04Rik|MCT|Tg(HLA-A2.1)1Enge	microcephaly, primary autosomal recessive 1	protein-coding	25.5	52.0	77.0	19.5	73.0	76.0
Merged-chr1-74588214-4	chr1	74587703	74588703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310668)	promoter-TSS (NM_001310668)	-86.0	NM_001305652	66821.0	Mm.358700	NM_025784	ENSMUSG00000026172	Bcs1l	9130022O19Rik	BCS1-like (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58393042-4	chr1	58392551	58393551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025824)	promoter-TSS (NM_025824)	-85.0	NM_025824	66882.0	Mm.21848	NM_025824	ENSMUSG00000051223	Bzw1	1200015E15Rik|mKIAA0005	basic leucine zipper and W2 domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88278990-4	chr7	88278480	88279480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009982, intron 1 of 6)	intron (NM_009982, intron 1 of 6)	895.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75981095-2	chr2	75980591	75981591	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_030188, exon 1 of 1)	exon (NM_030188, exon 1 of 1)	876.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	6.0	15.0	4.5	1.5	3.0	6.0
Merged-chr8-105855485-2	chr8	105854985	105855985	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_021513, exon 1 of 1)	exon (NM_021513, exon 1 of 1)	382.0	NM_021513	59016.0	Mm.286598	NM_021513	ENSMUSG00000036442	Thap11	2810036E22Rik|AB041579|CTG-B43a|CTG-B45d|Ronin	THAP domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-23156489-4	chr2	23155968	23156968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025979)	promoter-TSS (NM_025979)	-37.0	NM_013771	27377.0	Mm.23335	NM_013771	ENSMUSG00000026775	Yme1l1	FtsH1|Ftsh	YME1-like 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-127163017-4	chr6	127162510	127163510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040275, intron 1 of 1)	intron (NR_040275, intron 1 of 1)	-11962.0	NM_009829	12444.0	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	0.0	1.0	0.5	0.0	1.0	0.5
Merged-chr13-97858087-4	chr13	97857589	97858589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106977.0	NR_152263	111365222.0	Mm.440079	NR_152263		Eyelinc18	-	uncharacterized EyeLinc18	ncRNA	11.5	11.5	13.0	5.0	14.0	10.5
Merged-chr7-126928866-4	chr7	126928354	126929354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172747)	promoter-TSS (NM_172747)	-25.0	NM_172747	233877.0	Mm.245897	NM_172747	ENSMUSG00000030685	Kctd13	1500003N18Rik|AV259508|PDIP1alpha|Pdip1|Poldip1	potassium channel tetramerisation domain containing 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-80884786-4	chr13	80884307	80885307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042591, intron 1 of 7)	intron (NM_001042591, intron 1 of 7)	-1288.0	NR_153411	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35256344-4	chr2	35255857	35256857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001206367)	promoter-TSS (NM_001206367)	-2.0	NM_001206367	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81213226-4	chr7	81212712	81213712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008803)	promoter-TSS (NM_008803)	-592.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113619197-2	chr13	113618697	113619697	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130796)	promoter-TSS (NM_130796)	-633.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180922535-4	chr1	180922028	180923028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12494.0	NM_010094	13590.0	Mm.378911	NM_010094	ENSMUSG00000038793	Lefty1	AI450052|Ebaf|Leftb|Stra3|Tgfb4|lefty|lefty-1	left right determination factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-104522268-3	chr14	104521764	104522764	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026047, intron 1 of 5)	CpG	402.0	NM_026047	72486.0	Mm.291811	NM_026047	ENSMUSG00000022120	Rnf219	2610206B13Rik|2810449K13Rik|AI451544	ring finger protein 219	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-14103316-4	chr10	14102792	14103792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010437, intron 2 of 8)	intron (NM_010437, intron 2 of 8)	136913.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.0	5.0	10.5	4.0	22.0	6.5
Merged-chr19-4294579-4	chr19	4294085	4295085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 2 of 20)	intron (NM_001290818, intron 2 of 20)	-11448.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55147018-4	chr14	55146499	55147499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30064.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-130726893-2	chr7	130726393	130727393	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021314, intron 2 of 17)	intron (NM_021314, intron 2 of 17)	34337.0	NM_021314	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49237808-4	chr11	49237310	49238310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6381.0	NM_010794	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-4857698-4	chr1	4857202	4858202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011541)	promoter-TSS (NM_011541)	8.0	NM_011541	21399.0	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21635796-2	chr16	21635296	21636296	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 45 of 46)	Lx2|LINE|L1	58869.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58761552-4	chr1	58761046	58762046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30994.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29273790-2	chr6	29273290	29274290	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023516, intron 1 of 1)	B1_Mus1|SINE|Alu	1164.0	NM_023516	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126594014-4	chr8	126593503	126594503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164598)	promoter-TSS (NM_001164598)	-567.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71441820-2	chr6	71441320	71442320	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1183.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-43382618-4	chr15	43382118	43383118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94418.0	NR_046064	100038728.0	Mm.244168	NR_046064	ENSMUSG00000072592	Gm10373	-	predicted gene 10373	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-138909604-4	chr7	138909098	138910098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009760)	promoter-TSS (NM_009760)	-92.0	NM_009760	12176.0	Mm.378890	NM_009760	ENSMUSG00000078566	Bnip3	Nip3	BCL2/adenovirus E1B interacting protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-13270034-2	chr12	13269533	13270533	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027706, intron 1 of 51)	intron (NM_027706, intron 1 of 51)	906.0	NM_027706	71169.0	Mm.177520	NM_027706	ENSMUSG00000020576	Nbas	4933425L03Rik|Nag	neuroblastoma amplified sequence	protein-coding	13.5	30.0	32.0	9.5	9.0	17.5
Merged-chr4-4792742-3	chr4	4792249	4793249	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177730, exon 1 of 5)	exon (NM_177730, exon 1 of 5)	557.0	NM_177730	242291.0	Mm.218889	NM_177730	ENSMUSG00000066324	Impad1	1110001C20Rik|AA408880|AI451589|AL022796|B230207P20|Jaws|gPAPP	inositol monophosphatase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60263449-2	chr10	60262949	60263949	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14179.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78162867-2	chr11	78162367	78163367	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009423, intron 1 of 6)	intron (NM_009423, intron 1 of 6)	2683.0	NM_009423	22032.0	Mm.390418	NM_009423	ENSMUSG00000017386	Traf4	A530032M13Rik|CART1|msp2	TNF receptor associated factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16615339-4	chr7	16614828	16615828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172739)	promoter-TSS (NM_172739)	-335.0	NM_172739	232906.0	Mm.28646	NM_172739	ENSMUSG00000058230	Arhgap35	6430596G11Rik|AI841135|Grlf1|mKIAA1722|p190A|p190RhoGAP	Rho GTPase activating protein 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128461819-4	chr7	128461316	128462316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009383)	promoter-TSS (NM_009383)	-143.0	NM_001347640	21843.0	Mm.242072	NM_009383	ENSMUSG00000030846	Tial1	5330433G13Rik|AL033329|TIAR|mTIAR	Tia1 cytotoxic granule-associated RNA binding protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44119273-2	chr16	44118773	44119773	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	19986.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9023366-4	chr19	9022860	9023860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039959, intron 4 of 5)	intron (NM_001039959, intron 4 of 5)	34076.0	NM_001286518	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73512209-4	chr2	73511686	73512686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	17301.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54621748-4	chr13	54621268	54622268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178397)	promoter-TSS (NM_178397)	-16.0	NM_178397	76577.0	Mm.194459	NM_178397	ENSMUSG00000025873	Faf2	2210404D11Rik|AI462440|Ubxd8|mKIAA0887	Fas associated factor family member 2	protein-coding	2.5	7.0	5.5	0.0	8.0	2.5
Merged-chr10-17550867-4	chr10	17550368	17551368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-172360.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71628443-4	chr8	71627943	71628943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001029873, exon 42 of 42)	3' UTR (NM_001029873, exon 42 of 42)	2663.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	64.0	175.0	167.5	65.0	170.0	148.5
Merged-chr12-81595106-4	chr12	81594608	81595608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347386)	promoter-TSS (NM_001347386)	-100.0	NM_001347384	69792.0	Mm.279993	NM_027213	ENSMUSG00000002679	Med6	1500012F11Rik|AU019660|AV213303	mediator complex subunit 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170853775-4	chr1	170853278	170854278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 2 of 15)	intron (NM_001081304, intron 2 of 15)	13993.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-16589787-4	chr12	16589295	16590295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172950)	promoter-TSS (NM_172950)	-25.0	NM_172950	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	27.5	47.5	34.5	67.5	127.5	93.0
Merged-chr4-102760228-4	chr4	102759733	102760733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285852)	promoter-TSS (NM_001285852)	98.0	NM_001285859	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	7.5	10.5	3.0	5.0	13.0	5.0
Merged-chr8-104631419-4	chr8	104630869	104631869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019662)	promoter-TSS (NM_019662)	-48.0	NM_019662	56437.0	Mm.29467	NM_019662	ENSMUSG00000031880	Rrad	REM3|Rad	Ras-related associated with diabetes	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81177180-4	chr10	81176686	81177686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007907, intron 1 of 13)	intron (NM_007907, intron 1 of 13)	555.0	NM_007907	13629.0	Mm.2903	NM_007907	ENSMUSG00000034994	Eef2	Ef-2	eukaryotic translation elongation factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30195103-4	chr7	30194568	30195568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009795)	promoter-TSS (NM_009795)	85.0	NM_009795	12336.0	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|Cdps|Css1|D7Ertd146e	calpain, small subunit 1	protein-coding	153.5	302.5	300.0	169.0	324.0	279.0
Merged-chr2-128445608-4	chr2	128445130	128446130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16279.0	NR_028590	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	12.0	67.0	55.5	3.0	6.5	5.5
Merged-chr8-117526343-4	chr8	117525850	117526850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 2 of 32)	intron (NM_172285, intron 2 of 32)	28075.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114661222-4	chr5	114660708	114661708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-2787.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	80.5	229.0	217.5	96.0	231.5	213.0
Merged-chr8-84203631-4	chr8	84203149	84204149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4869.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	92.5	249.0	222.0	93.5	296.5	187.5
Merged-chr13-49682082-4	chr13	49681561	49682561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172015)	promoter-TSS (NM_172015)	-69.0	NM_172015	105148.0	Mm.21118	NM_172015	ENSMUSG00000037851	Iars	2510016L12Rik|AI327140|AU044614|E430001P04Rik|ILRS	isoleucine-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31019112-4	chr14	31018614	31019614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153547)	promoter-TSS (NM_153547)	17.0	NM_153547	30877.0	Mm.88512	NM_153547	ENSMUSG00000042354	Gnl3	Ns	guanine nucleotide binding protein-like 3 (nucleolar)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-35747030-4	chr5	35746535	35747535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7048.0	NM_001359895	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	1.5	11.0	0.5	3.0	12.0	1.5
Merged-chr11-8706110-4	chr11	8705612	8706612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-41577.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95315228-4	chr3	95314692	95315692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029789)	promoter-TSS (NM_029789)	2.0	NM_029789	76893.0	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4477217-7	chr12	4476704	4477704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010881)	promoter-TSS (NM_010881)	-22.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39560924-4	chr18	39560418	39561418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73673.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24886543-4	chr17	24886019	24887019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355396)	promoter-TSS (NM_001355396)	-124.0	NR_152137	79043.0	Mm.274794	NM_027141	ENSMUSG00000024160	Spsb3	2310012N15Rik|3300001M01Rik|SSB3|Tce1|mKIAA4204	splA/ryanodine receptor domain and SOCS box containing 3	protein-coding	65.5	156.5	118.0	78.5	172.0	141.5
Merged-chr7-25703969-4	chr7	25703466	25704466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011577, intron 5 of 6)	intron (NM_011577, intron 5 of 6)	15087.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102432239-4	chr11	102431759	102432759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008175, intron 1 of 12)	intron (NM_008175, intron 1 of 12)	1937.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28766632-4	chr7	28766123	28767123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122765)	promoter-TSS (NM_001122765)	21.0	NM_001306222	18036.0	Mm.220333	NM_010908	ENSMUSG00000030595	Nfkbib	I(Kappa)B(beta)|I-kappa-B-beta|IKB-beta|IKappaBbeta|IkB|IkBb|NF-kappa-BIB|ikB-B	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56933013-4	chr18	56932534	56933534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3226.0	NR_033455	100038410.0	Mm.353669	NR_033455		Gm10536	-	predicted gene 10536	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60792143-4	chr18	60791635	60792635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-11714.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	18.0	20.5	10.5	12.5	24.5	10.0
Merged-chr8-11007270-4	chr8	11006776	11007776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046017)	promoter-TSS (NR_046017)	-574.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55750201-4	chr16	55749729	55750729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71909.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72262166-4	chr5	72261665	72262665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 11 of 22)	intron (NR_003966, intron 11 of 22)	58822.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29935437-4	chr2	29934950	29935950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028923)	promoter-TSS (NM_028923)	41.0	NM_028923	74412.0	Mm.275121	NM_028923	ENSMUSG00000019715	Gle1	4933405K21Rik|AA553313|Gle1l	GLE1 RNA export mediator (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127444595-4	chr2	127444139	127445139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029629)	promoter-TSS (NM_029629)	-74.0	NM_029629	68126.0	Mm.288676	NM_029629	ENSMUSG00000027371	Fahd2a	1500003K14Rik|B430104H02Rik|Cgi-105|Fahd2	fumarylacetoacetate hydrolase domain containing 2A	protein-coding	6.0	44.5	30.5	4.0	24.5	29.5
Merged-chr1-127774644-1	chr1	127774144	127775144	+	1000.0	f0_c57.idr	promoter-TSS (NR_045298)	promoter-TSS (NR_045298)	480.0	NM_028399	72949.0	Mm.268672	NM_028399	ENSMUSG00000026349	Ccnt2	2900041I18Rik|C81304|CycT2|CycT2a|CycT2b	cyclin T2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-26805442-2	chr11	26804942	26805942	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20334.0	NR_002890	654472.0	Mm.347777	NR_002890		Gm12070	-	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.0	0.0	2.5	0.0	0.0	2.5
Merged-chr9-122865938-4	chr9	122865431	122866431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173364)	promoter-TSS (NM_173364)	75.0	NM_001359935	235682.0	Mm.326477	NM_173364	ENSMUSG00000047036	Zfp445	AW610627|ZNF168|Znf445|mszf29|mszf50	zinc finger protein 445	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-44455696-2	chr17	44455196	44456196	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	267124.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-42937673-4	chr17	42937171	42938171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61247.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-6516137-4	chr18	6515597	6516597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007935)	promoter-TSS (NM_007935)	11.0	NM_007935	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	81.0	211.5	120.0	86.5	207.5	134.5
Merged-chr4-3938244-2	chr4	3937744	3938744	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190322)	promoter-TSS (NM_001190322)	161.0	NM_019969	56711.0	Mm.331467	NM_019969	ENSMUSG00000003282	Plag1	-	pleiomorphic adenoma gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70912059-4	chr12	70911554	70912554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25803.0	NM_019785	56444.0	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23868527-4	chr18	23867993	23868993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	64523.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-77293021-4	chr5	77292523	77293523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17063.0	NM_019836	56412.0	Mm.129136	NM_019836	ENSMUSG00000036285	Noa1	2610024G14Rik|AU022345|AtNOS1|mAtNOS1	nitric oxide associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130189124-2	chr4	130188624	130189624	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14002.0	NM_023476	94242.0	Mm.15801	NM_023476	ENSMUSG00000028776	Tinagl1	1110021J17Rik|AZ-1|AZ1|Arg1|Lcn7|TARP|Tinagl	tubulointerstitial nephritis antigen-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78174297-4	chr15	78173794	78174794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025931)	promoter-TSS (NM_025931)	-186.0	NM_025931	67042.0	Mm.30191	NM_025931	ENSMUSG00000016637	Ift27	2600013G09Rik|Rabl4	intraflagellar transport 27	protein-coding	0.0	2.0	0.0	1.0	5.0	6.0
Merged-chr5-130278335-4	chr5	130277836	130278836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153350, intron 8 of 15)	intron (NR_153350, intron 8 of 15)	21299.0	NM_001015876	100929.0	Mm.271296	NM_178897	ENSMUSG00000056310	Tyw1	AW125391|Rsafd1	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-112231391-2	chr2	112230891	112231891	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8450.0	NM_207206	99010.0	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-48994107-4	chr16	48993598	48994598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356425)	promoter-TSS (NM_001356425)	14.0	NM_027341	224170.0	Mm.275138	NM_027341	ENSMUSG00000064061	Dzip3	2310047C04Rik|2A-HUB|6430549P11Rik|A230104G20	DAZ interacting protein 3, zinc finger	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108529569-4	chr6	108529092	108530092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 60 of 61)	intron (NM_010585, intron 60 of 61)	39849.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	11.5	19.0	26.0	16.5	61.5	46.0
Merged-chr16-85173228-2	chr16	85172745	85173745	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001198825, intron 1 of 15)	CpG	462.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	6.0	31.5	22.0	12.0	30.5	16.0
Merged-chr4-105271403-4	chr4	105270904	105271904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114057.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	4.0	9.0	8.0	2.0	11.0	7.0
Merged-chr10-80578583-4	chr10	80578115	80579115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1319.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-145942163-4	chr3	145941667	145942667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151445, intron 3 of 3)	intron (NR_151445, intron 3 of 3)	4153.0	NR_151446	66421.0	Mm.25137	NM_025555	ENSMUSG00000036873	2410004B18Rik	4930572C24Rik	RIKEN cDNA 2410004B18 gene	protein-coding	4.0	0.5	1.5	1.5	15.0	1.5
Merged-chr11-116087583-4	chr11	116087072	116088072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347642)	promoter-TSS (NM_001347642)	-577.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49462686-4	chr7	49462185	49463185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 9 of 37)	intron (NM_175272, intron 9 of 37)	174150.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86579061-4	chr11	86578587	86579587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5071.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-68011382-4	chr15	68010897	68011897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	247459.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	15.5	12.0	5.5	19.0	47.0	29.5
Merged-chr4-136893016-4	chr4	136892518	136893518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007574)	promoter-TSS (NM_007574)	-104.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	46.5	133.5	115.5	54.0	156.5	93.5
Merged-chr1-172312353-4	chr1	172311856	172312856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080419)	promoter-TSS (NM_080419)	-11.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	116.0	328.5	219.0	171.5	368.0	274.5
Merged-chr7-83645645-4	chr7	83645143	83646143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 18 of 18)	intron (NM_001360088, intron 18 of 18)	9852.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21636346-4	chr16	21635854	21636854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 45 of 46)	intron (NM_001081366, intron 45 of 46)	58311.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11686211-4	chr11	11685707	11686707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001301868, exon 1 of 8)	5' UTR (NM_001301868, exon 1 of 8)	282.0	NM_001025597	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-151058094-4	chr4	151057607	151058607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009498)	promoter-TSS (NM_009498)	-154.0	NM_009498	22319.0	Mm.273930	NM_009498	ENSMUSG00000028955	Vamp3	D130027G05Rik|VAMP-3|ceb	vesicle-associated membrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69685404-4	chr11	69684888	69685888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011614)	TTS (NM_011614)	166.0	NM_001159505	69583.0	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9764086-4	chr13	9763571	9764571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347476)	promoter-TSS (NM_001347476)	-261.0	NM_001347476	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40637583-2	chr12	40637083	40638083	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 6 of 52)	intron (NM_172803, intron 6 of 52)	191530.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143502668-2	chr7	143502168	143503168	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009434)	promoter-TSS (NM_009434)	-144.0	NM_009434	22113.0	Mm.334344	NM_009434	ENSMUSG00000010760	Phlda2	Ipl|Tssc3	pleckstrin homology like domain, family A, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80032019-2	chr10	80031519	80032519	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001142701)	TTS (NM_001142701)	7640.0	NM_025554	66420.0	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76766738-2	chr16	76766238	76767238	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155453, intron 1 of 3)	intron (NR_155453, intron 1 of 3)	12354.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117182709-4	chr4	117182223	117183223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134471)	promoter-TSS (NM_134471)	-99.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-33929341-4	chr8	33928843	33929843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042675, intron 1 of 6)	intron (NM_001042675, intron 1 of 6)	520.0	NM_019733	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	29.0	58.5	61.5	18.5	14.0	32.0
Merged-chr17-83680433-4	chr17	83679941	83680941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-25722.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118137037-4	chr14	118136537	118137537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021434)	promoter-TSS (NM_021434)	-90.0	NM_021434	58245.0	Mm.275411	NM_021434	ENSMUSG00000022131	Gpr180	AB041545|E130016I23Rik|Itr	G protein-coupled receptor 180	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45598031-4	chr17	45597548	45598548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199115, intron 1 of 12)	intron (NM_001199115, intron 1 of 12)	1555.0	NM_001199115	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3490565-4	chr5	3490063	3491063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-53270.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57246959-2	chr17	57246459	57247459	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030084, intron 1 of 16)	intron (NM_030084, intron 1 of 16)	511.0	NM_001308074	78308.0	Mm.28468	NM_030084	ENSMUSG00000005823	Gpr108	1810015L19Rik|AA589464|C79132|Lustr2	G protein-coupled receptor 108	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44997293-4	chr7	44996808	44997808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016849)	promoter-TSS (NM_016849)	271.0	NM_029410	75736.0	Mm.261006	NM_029410	ENSMUSG00000003190	Bcl2l12	2810475P17Rik|5430429M05Rik|Bcl-L12|Bcl2-L12	BCL2-like 12 (proline rich)	protein-coding	59.0	81.5	63.5	41.0	134.0	56.0
Merged-chr11-69662755-4	chr11	69662264	69663264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301710)	promoter-TSS (NM_001301710)	-115.0	NM_011900	24070.0	Mm.89579	NM_011900	ENSMUSG00000018761	Mpdu1	LEC35|SL15|Supl15h	mannose-P-dolichol utilization defect 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66114498-4	chr9	66114000	66115000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019727, intron 1 of 14)	intron (NM_019727, intron 1 of 14)	10386.0	NM_019727	56440.0	Mm.271891	NM_019727	ENSMUSG00000032382	Snx1	-	sorting nexin 1	protein-coding	23.5	42.5	45.5	22.0	60.0	36.5
Merged-chr10-12869414-4	chr10	12868900	12869900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7665.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	39.5	70.5	82.0	26.0	76.5	82.5
Merged-chr7-41599241-4	chr7	41598755	41599755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-34276.0	NM_001360675	67607.0	Mm.384626	NM_023363	ENSMUSG00000074165	Zfp788	2810426N06Rik|AI256342|AI605193	zinc finger protein 788	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-44756646-4	chr4	44756130	44757130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138590)	promoter-TSS (NM_138590)	71.0	NM_138590	319885.0	Mm.331576	NM_138590	ENSMUSG00000035649	Zcchc7	4930572I07Rik|D4Wsu132e	zinc finger, CCHC domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94724421-4	chr16	94723836	94724836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112917.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57671811-2	chr17	57671311	57672311	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97759.0	NM_001081653	620292.0	Mm.391030	NM_001081653	ENSMUSG00000038048	Cntnap5c	Caspr5-3|EG620292|Gm325	contactin associated protein-like 5C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-50417887-4	chr13	50417390	50418390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175401)	promoter-TSS (NM_175401)	26.0	NR_154273	109082.0	Mm.18638	NM_175401	ENSMUSG00000037816	Fbxw17	1110064L07Rik|C85886	F-box and WD-40 domain protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173661789-2	chr2	173661289	173662289	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024436, intron 2 of 6)	intron (NM_024436, intron 2 of 6)	1944.0	NM_024436	19334.0	Mm.275304	NM_024436	ENSMUSG00000027519	Rab22a	3732413A17Rik|AI662177|AW319644|AW550514|E130120E14Rik|Rab22	RAB22A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91046412-4	chr1	91045877	91046877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-7067.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70673255-4	chr8	70672766	70673766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015816)	promoter-TSS (NM_015816)	35.0	NM_015816	50783.0	Mm.248188	NM_015816	ENSMUSG00000031848	Lsm4	-	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	113.0	265.0	211.0	116.0	277.0	199.5
Merged-chr11-116168255-4	chr11	116167754	116168754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172571)	promoter-TSS (NM_172571)	-76.0	NM_172571	217335.0	Mm.35241	NM_172571	ENSMUSG00000020776	Fbf1	1110033G01Rik|5930413D20|mKIAA1863	Fas (TNFRSF6) binding factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155694774-4	chr4	155694290	155695290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178699, exon 1 of 1)	exon (NM_178699, exon 1 of 1)	448.0	NM_178699	230991.0	Mm.29083	NM_178699	ENSMUSG00000074738	Fndc10	B930041F14Rik|MNCb-3966	fibronectin type III domain containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180835840-4	chr1	180835313	180836313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20A3_MM|LTR|ERVK	-15338.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80141439-4	chr10	80140931	80141931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025313)	promoter-TSS (NM_025313)	-844.0	NM_001347092	66043.0	Mm.278560	NM_025313	ENSMUSG00000003072	Atp5d	0610008F14Rik|1500000I11Rik|AA960090|AI876556|AU020773|Atp5f1d|C85518	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87853240-4	chr1	87852811	87853811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177646)	promoter-TSS (NM_177646)	24.0	NM_177646	227333.0	Mm.277217	NM_177646	ENSMUSG00000070738	Dgkd	AI841987|D330025K09|DGKdelta|dgkd-2	diacylglycerol kinase, delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152888008-4	chr1	152887512	152888512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160257, intron 1 of 23)	intron (NM_001160257, intron 1 of 23)	14633.0	NM_001359257	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102028959-1	chr5	102028459	102029459	+	1000.0	f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	ORR1E|LTR|ERVL-MaLR	40962.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	7.5	26.5	17.5	25.0	41.0	23.0
Merged-chr10-80264846-4	chr10	80264350	80265350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122605)	promoter-TSS (NM_001122605)	-141.0	NM_001122604	70248.0	Mm.148693	NM_133188	ENSMUSG00000069565	Dazap1	2410042M16Rik|mPrrp	DAZ associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-43034955-4	chr10	43034448	43035448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175407, intron 5 of 6)	intron (NM_175407, intron 5 of 6)	-43786.0	NR_153349	327749.0	Mm.428887	NR_153349		Gm5079	C230040G06	predicted gene 5079	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59656411-4	chr9	59655898	59656898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011099)	promoter-TSS (NM_011099)	30.0	NM_011099	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7057860-4	chr19	7057346	7058346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134147, intron 1 of 10)	intron (NM_134147, intron 1 of 10)	1078.0	NM_134147	107227.0	Mm.439977	NM_134147	ENSMUSG00000036278	Macrod1	AI604841|AW743046|D930010J01Rik|Lrp16	MACRO domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37013181-4	chr1	37012656	37013656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73629.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35027196-4	chr7	35026709	35027709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 11 of 14)	intron (NM_008820, intron 11 of 14)	29357.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121374606-4	chr9	121374105	121375105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357973, intron 1 of 5)	intron (NM_001357973, intron 1 of 5)	7647.0	NM_175114	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108995130-4	chr8	108994635	108995635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58275.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	1.5	8.5	9.0	10.5	7.0	13.5
Merged-chr6-91686725-2	chr6	91686225	91687225	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 1 of 14)	intron (NM_009320, intron 1 of 14)	2658.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85475137-4	chr12	85474650	85475650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010234, exon 2 of 4)	exon (NM_010234, exon 2 of 4)	1260.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87455122-5	chr16	87454664	87455664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024258, intron 1 of 17)	CpG	179.0	NM_024258	74112.0	Mm.152941	NM_024258	ENSMUSG00000025616	Usp16	1200004E02Rik|2810483I07Rik|6330514E22Rik|UBPM	ubiquitin specific peptidase 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25010421-2	chr8	25009921	25010921	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270996, intron 1 of 21)	intron (NM_001270996, intron 1 of 21)	6501.0	NM_001270996	11502.0	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	64.0	182.0	95.0	47.0	135.5	80.5
Merged-chr7-30729538-4	chr7	30729053	30730053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027215)	promoter-TSS (NM_027215)	-19.0	NM_027215	69804.0	Mm.27499	NM_027215	ENSMUSG00000006315	Tmem147	2010004E11Rik|5033425B17Rik|Nifie14	transmembrane protein 147	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-94838261-4	chr3	94837763	94838763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165948, intron 1 of 18)	CpG	696.0	NM_172683	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4081736-2	chr19	4081236	4082236	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160253)	promoter-TSS (NM_001160253)	-752.0	NM_001160253	29866.0	Mm.46268	NM_013878	ENSMUSG00000024857	Cabp2	-	calcium binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-178318667-5	chr1	178318157	178319157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025511)	promoter-TSS (NM_025511)	-496.0	NM_025511	66359.0	Mm.489720	NM_025511	ENSMUSG00000026500	Cox20	2310005N03Rik|Fam36a	COX20 Cox2 chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143053551-4	chr7	143053084	143054084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_110354, exon 1 of 5)	non-coding (NR_110354, exon 1 of 5)	102.0	NR_110355	97423.0	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-125116715-4	chr4	125116201	125117201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11180.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126861883-4	chr7	126861392	126862392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172746)	promoter-TSS (NM_172746)	-80.0	NM_172746	233876.0	Mm.363427	NM_172746	ENSMUSG00000042606	Hirip3	B130036O03|C86302	HIRA interacting protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135716588-4	chr7	135716088	135717088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081117)	promoter-TSS (NM_001081117)	-209.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95888469-4	chr8	95887965	95888965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010325)	promoter-TSS (NM_010325)	-100.0	NM_010325	14719.0	Mm.230169	NM_010325	ENSMUSG00000031672	Got2	AL022787|FABP-pm|Got-2|Kyat4|mAspAT	glutamatic-oxaloacetic transaminase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108094568-4	chr9	108094075	108095075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146226)	promoter-TSS (NM_146226)	-95.0	NM_146226	235606.0	Mm.219639	NM_146226	ENSMUSG00000032590	Apeh	-	acylpeptide hydrolase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35022355-4	chr16	35021870	35022870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023587)	promoter-TSS (NM_023587)	-51.0	NM_023587	70757.0	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-7398061-4	chr1	7397557	7398557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	309137.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	9.5	44.5	30.0	14.0	30.0	41.5
Merged-chr2-43556064-2	chr2	43555564	43556564	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289593, intron 1 of 12)	intron (NM_001289593, intron 1 of 12)	739.0	NM_027552	70789.0	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-65834046-4	chr14	65833541	65834541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028039)	promoter-TSS (NM_028039)	-72.0	NM_028039	71988.0	Mm.249280	NM_028039	ENSMUSG00000022034	Esco2	2410004I17Rik|D030072L07Rik	establishment of sister chromatid cohesion N-acetyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48262016-4	chr17	48261488	48262488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2307.0	NM_172623	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11758351-4	chr8	11757833	11758833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113518)	promoter-TSS (NM_001113518)	3.0	NM_001113518	54126.0	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29245886-4	chr17	29245366	29246366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8076.0	NM_001360239	240058.0	Mm.39905	NM_153166	ENSMUSG00000024008	Cpne5	A830083G22Rik	copine V	protein-coding	0.0	3.0	0.0	0.0	0.0	1.0
Merged-chr16-96145328-4	chr16	96144815	96145815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207301)	promoter-TSS (NM_207301)	-104.0	NM_207301	71446.0	Mm.255063	NM_207301	ENSMUSG00000023147	Wrb	5530402J05Rik|C030018G21Rik|Chd5	tryptophan rich basic protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80390870-4	chr18	80390380	80391380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26626.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	1.0	26.5	19.5	7.5	9.0	14.0
Merged-chr1-156615763-4	chr1	156615257	156616257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	56970.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	15.0	35.0	22.5	7.0	35.5	47.0
Merged-chr9-118671096-2	chr9	118670596	118671596	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 9 of 27)	intron (NM_133721, intron 9 of 27)	-40596.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	2.0	0.5	0.0	2.0	0.5
Merged-chr4-88544057-4	chr4	88543561	88544561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14184.0	NM_206870	242517.0	Mm.377261	NM_206870	ENSMUSG00000096011	Ifna15	Gm12597|Ifnaa|MuIFN-alpha-A	interferon alpha 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122376516-4	chr8	122376007	122377007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310650)	promoter-TSS (NM_001310650)	-102.0	NM_001310650	76014.0	Mm.241489	NM_001029993	ENSMUSG00000017478	Zc3h18	1190001B23Rik|5830416A07Rik|Nhn1	zinc finger CCCH-type containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105289207-4	chr8	105288720	105289720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177788)	TTS (NM_177788)	308.0	NM_001166394	74356.0	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20201852-4	chr11	20201362	20202362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 1 of 5)	CpG	450.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	96.5	223.5	235.0	93.0	230.5	237.5
Merged-chr11-75510805-4	chr11	75510325	75511325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001029938, exon 4 of 8)	exon (NM_001029938, exon 4 of 8)	731.0	NM_001029938	280408.0	Mm.41416	NM_001029938	ENSMUSG00000038195	Rilp	AI835553|Gm857	Rab interacting lysosomal protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17838364-4	chr17	17837904	17838904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001162909, exon 8 of 9)	exon (NM_001162909, exon 8 of 9)	7429.0	NM_001162909	75202.0	Mm.227456	NM_029205	ENSMUSG00000080316	Spaca6	4930546H06Rik|9530079D04Rik|B230206P06Rik|Ncrna00085|SPACA6A|let-7e|mir-125a|mir-99b	sperm acrosome associated 6	protein-coding	62.5	107.5	146.0	77.5	140.5	146.5
Merged-chr5-86804178-4	chr5	86803700	86804700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347375)	promoter-TSS (NM_001347375)	-66.0	NM_001347375	231386.0	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133339430-4	chr4	133338925	133339925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199306)	promoter-TSS (NM_199306)	-110.0	NM_199306	230796.0	Mm.226576	NM_199306	ENSMUSG00000037622	Wdtc1	Gm695|adipose|adp	WD and tetratricopeptide repeats 1	protein-coding	0.0	0.5	0.0	0.0	2.0	0.5
Merged-chr10-78185164-4	chr10	78184654	78185654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029546)	promoter-TSS (NM_029546)	-5.0	NM_029546	110816.0	Mm.103522	NM_029546	ENSMUSG00000032834	Pwp2	6530411D08Rik|Pwp2h|wdp103	PWP2 periodic tryptophan protein homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25628042-4	chr2	25627538	25628538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007995)	promoter-TSS (NM_007995)	-64.0	NM_007995	14133.0	Mm.10510	NM_007995	ENSMUSG00000026938	Fcna	Fcn1	ficolin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20784476-4	chr13	20783976	20784976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9637.0	NM_001281854	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	19.0	16.0	11.0	18.5	38.5	19.5
Merged-chr16-94370831-4	chr16	94370260	94371260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159620)	promoter-TSS (NM_001159620)	21.0	NM_009441	22129.0	Mm.213408	NM_009441	ENSMUSG00000040785	Ttc3	2610202A04Rik|AA409221|D16Ium21|D16Ium21e|TPRD|mKIAA4119	tetratricopeptide repeat domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-15842058-4	chr6	15841550	15842550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121389.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81849858-2	chr7	81849339	81850339	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-9162.0	NR_111910	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	80.5	229.0	152.5	61.0	167.0	131.5
Merged-chr2-61576097-2	chr2	61575597	61576597	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2489.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91455651-2	chr16	91455151	91456151	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-9453.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	12.5	47.5	34.5	17.5	46.0	27.0
Merged-chr18-43509148-4	chr18	43508634	43509634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70848.0	NM_001291455	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-82283286-4	chr1	82282809	82283809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010570, intron 1 of 1)	CpG	8130.0	NM_010570	16367.0	Mm.4952	NM_010570	ENSMUSG00000055980	Irs1	G972R|IRS-1	insulin receptor substrate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27688166-4	chr2	27687668	27688668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	10967.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47530194-4	chr9	47529690	47530690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310841)	promoter-TSS (NM_001310841)	20.0	NM_001310841	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	31.0	33.5	56.0	19.0	37.5	35.0
Merged-chr3-51228218-4	chr3	51227738	51228738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009834, intron 1 of 2)	B3|SINE|B2	3791.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81408296-2	chr10	81407796	81408796	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 4 of 8)	intron (NM_026756, intron 4 of 8)	-1279.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-10429251-4	chr10	10428746	10429746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 9 of 36)	intron (NM_001127353, intron 9 of 36)	43068.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73553064-4	chr2	73552570	73553570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23583.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-104471984-2	chr14	104471484	104472484	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3985.0	NM_011143	18996.0	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58129287-1	chr13	58128787	58129787	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_029872)	promoter-TSS (NM_029872)	-731.0	NM_029872	77134.0	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	136.0	291.0	213.5	140.0	252.0	195.0
Merged-chr14-10453122-4	chr14	10452619	10453619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 4 of 9)	intron (NM_001360141, intron 4 of 9)	339.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41589944-3	chr4	41589446	41590446	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175138, intron 1 of 19)	intron (NM_175138, intron 1 of 19)	20152.0	NM_175138	68922.0	Mm.79127	NM_175138	ENSMUSG00000061322	Dnaic1	1110066F04Rik|BB124644|Dnai1|b2b1526Clo	dynein, axonemal, intermediate chain 1	protein-coding	29.5	33.5	26.5	26.5	13.5	4.5
Merged-chr17-71616131-4	chr17	71615608	71616608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175639)	promoter-TSS (NM_175639)	-107.0	NM_175639	72515.0	Mm.257762	NM_175639	ENSMUSG00000041057	Wdr43	2610318G08Rik|AU020887|AV024208|Wrd43|mKIAA0007	WD repeat domain 43	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116594910-4	chr3	116594399	116595399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289571)	promoter-TSS (NM_001289571)	-12.0	NR_152258	229780.0	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	14.0	119.0	75.0	53.5	75.5	68.0
Merged-chr6-7738071-4	chr6	7737564	7738564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D5|LTR|ERVK	-44882.0	NM_012055	27053.0	Mm.2942	NM_012055	ENSMUSG00000029752	Asns	-	asparagine synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8746844-4	chr3	8746357	8747357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79819.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70851864-4	chr17	70851369	70852369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009372)	promoter-TSS (NM_009372)	-135.0	NM_001164075	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44089053-4	chr9	44088577	44089577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198091, intron 1 of 11)	intron (NM_198091, intron 1 of 11)	4157.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-7915083-4	chr17	7914564	7915564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10936.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0.0	0.5	7.5	0.0	0.5	7.5
Merged-chr15-79690609-4	chr15	79690116	79691116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013818)	promoter-TSS (NM_013818)	-280.0	NM_013818	14904.0	Mm.19080	NM_013818	ENSMUSG00000042535	Gtpbp1	AL022987|AW045683|C85212|GP-1|Gtpbp	GTP binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90453606-2	chr2	90453106	90454106	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 11 of 23)	intron (NM_008982, intron 11 of 23)	25568.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58271358-4	chr9	58270853	58271853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18189.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75733424-4	chr2	75732945	75733945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28782.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	145.5	363.0	238.0	136.0	294.5	247.0
Merged-chr10-85917076-4	chr10	85916545	85917545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302886)	promoter-TSS (NM_001302886)	-59.0	NM_001302886	72843.0	Mm.25307	NM_181650	ENSMUSG00000035529	Prdm4	1700031E19Rik|2810470D21Rik|AW552272|SC-1|SC1	PR domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172632627-3	chr1	172632119	172633119	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026725, exon 1 of 2)	exon (NM_026725, exon 1 of 2)	355.0	NM_026725	68440.0	Mm.33024	NM_026725	ENSMUSG00000026544	Dusp23	1300005N15Rik|LDP-3	dual specificity phosphatase 23	protein-coding	232.0	460.0	444.0	226.0	421.0	328.5
Merged-chr3-79287311-4	chr3	79286801	79287801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-58075.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-95935227-4	chr5	95934722	95935722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21717.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-9131180-4	chr15	9130661	9131661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 2 of 9)	intron (NM_013787, intron 2 of 9)	9293.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17881767-4	chr12	17881227	17882227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	190918.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	43.0	42.0	43.5	18.5	46.0	35.0
Merged-chr2-158160099-4	chr2	158159572	158160572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13680.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78467620-2	chr10	78467120	78468120	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2672.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104247953-4	chr8	104247485	104248485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045642, intron 1 of 8)	intron (NR_045642, intron 1 of 8)	573.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-114688698-4	chr9	114688197	114689197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146229)	promoter-TSS (NM_146229)	-134.0	NM_146229	235661.0	Mm.128627	NM_146229	ENSMUSG00000032435	Dync1li1	1110053F02Rik|Dnclic1|LIC-1	dynein cytoplasmic 1 light intermediate chain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120041054-2	chr11	120040586	120041586	+	1000.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	695.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	229.5	426.0	340.5	313.5	632.0	459.0
Merged-chr5-88981816-4	chr5	88981318	88982318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359211, intron 3 of 26)	intron (NM_001359211, intron 3 of 26)	-46148.0	NM_001359212	54403.0	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	17.0	16.0	5.0	3.0	7.5	12.5
Merged-chr8-92855853-4	chr8	92855345	92856345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357375, intron 1 of 12)	intron (NM_001357375, intron 1 of 12)	512.0	NM_001357374	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	105.0	258.0	147.5	92.5	267.5	189.5
Merged-chr14-75188673-2	chr14	75188173	75189173	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	52248.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73724700-4	chr15	73724202	73725202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166388)	promoter-TSS (NM_001166388)	-95.0	NM_001357591	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86658039-3	chr17	86657542	86658542	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011104)	TTS (NM_011104)	-95822.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.5	1.0	4.0	0.0	0.0	4.5
Merged-chr4-117915144-4	chr4	117914643	117915643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146152)	promoter-TSS (NM_146152)	-144.0	NM_146152	230673.0	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	4.5	8.5	14.5	5.0	10.5	2.5
Merged-chr2-152686982-4	chr2	152686489	152687489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025543)	promoter-TSS (NM_025543)	-159.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	22.5	106.5	44.5	6.5	9.0	6.5
Merged-chr13-83075862-4	chr13	83075305	83076305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-377472.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	8.0	27.0	24.0	14.0	14.5	15.0
Merged-chr4-93520945-4	chr4	93520433	93521433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-185422.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	7.5	14.0	5.0	8.0	15.5	6.5
Merged-chr15-84325959-4	chr15	84325396	84326396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162500)	promoter-TSS (NM_001162500)	-223.0	NM_001162500	64099.0	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	17.0	25.5	30.5	8.5	26.0	24.5
Merged-chr6-120956975-4	chr6	120956456	120957456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270475, intron 27 of 31)	intron (NM_001270475, intron 27 of 31)	-1888.0	NR_138099	215458.0	Mm.122399	NR_138099		LOC215458	-	uncharacterized LOC215458	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34652645-4	chr13	34652143	34653143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105041)	promoter-TSS (NR_105041)	38.0	NM_025831	66895.0	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81307054-2	chr10	81306554	81307554	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 5 of 17)	intron (NM_001293647, intron 5 of 17)	-14049.0	NM_027381	70312.0	Mm.87628	NM_027381	ENSMUSG00000034889	Cactin	2510012J08Rik	cactin, spliceosome C complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53554621-3	chr19	53554103	53555103	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25285.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97663857-4	chr15	97663350	97664350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	41972.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-74009375-4	chr13	74008878	74009878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182839)	promoter-TSS (NM_182839)	-41.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46811493-4	chr8	46810984	46811984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 5 of 7)	intron (NR_152560, intron 5 of 7)	71739.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50819617-2	chr15	50819117	50820117	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	69432.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0.0	3.0	4.0	1.0	7.5	5.0
Merged-chr10-123061016-4	chr10	123060513	123061513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163024, intron 1 of 34)	RMER19B|LTR|ERVK	15492.0	NM_001163024	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	7.5	21.5	19.5	7.5	13.0	16.5
Merged-chr2-118562591-4	chr2	118562083	118563083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12897.0	NM_138313	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	68.0	191.5	127.0	94.0	154.5	84.5
Merged-chr17-24740741-2	chr17	24740241	24741241	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013759, intron 3 of 4)	B2_Mm1a|SINE|B2	4148.0	NM_001346668	27361.0	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	6.5	6.5	6.0	8.0	1.5	9.0
Merged-chr5-31241401-4	chr5	31240885	31241885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_147201, intron 1 of 17)	GC_rich|Low_complexity|Low_complexity	467.0	NM_147201	192292.0	Mm.292040	NM_147201	ENSMUSG00000029148	Nrbp1	B230344L17Rik|Nrbp	nuclear receptor binding protein 1	protein-coding	6.5	2.0	8.0	3.0	0.0	6.0
Merged-chr10-41595773-4	chr10	41595245	41596245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 30 of 47)	intron (NM_001358562, intron 30 of 47)	27729.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104384188-4	chr8	104383691	104384691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153582, intron 1 of 3)	intron (NM_153582, intron 1 of 3)	11616.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-57610068-4	chr19	57609597	57610597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181415)	promoter-TSS (NM_181415)	-937.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	183.5	297.0	226.5	139.5	253.5	224.5
Merged-chr16-18413202-4	chr16	18412713	18413713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007744, intron 1 of 4)	intron (NM_007744, intron 1 of 4)	281.0	NM_001111063	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-85152646-4	chr16	85152145	85153145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	URR1B|DNA|hAT-Charlie	21062.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	34.0	78.5	56.5	75.0	110.0	89.5
Merged-chr11-120636200-2	chr11	120635700	120636700	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_144795, exon 8 of 8)	3' UTR (NM_144795, exon 8 of 8)	-2653.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-82764067-4	chr10	82763528	82764528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010914, exon 1 of 8)	5' UTR (NM_010914, exon 1 of 8)	113.0	NM_010914	18045.0	Mm.245998	NM_010914	ENSMUSG00000020248	Nfyb	AA985999|Cbf-A	nuclear transcription factor-Y beta	protein-coding	11.5	22.5	24.0	2.0	8.5	10.5
Merged-chr9-46735805-2	chr9	46735303	46736303	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-177800.0	NR_015605	73040.0	Mm.265384	NR_015605	ENSMUSG00000099696	2900052N01Rik	AU067665	RIKEN cDNA 2900052N01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr9-35050201-4	chr9	35049712	35050712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 9 of 10)	intron (NM_009178, intron 9 of 10)	-66516.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	8.5	33.5	25.5	19.0	46.5	28.0
Merged-chr18-35918419-4	chr18	35917917	35918917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46413.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89258337-4	chr6	89257833	89258833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27392.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101010226-2	chr11	101009726	101010726	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243049, intron 1 of 20)	intron (NM_001243049, intron 1 of 20)	774.0	NM_001243051	11975.0	Mm.340818	NM_016920	ENSMUSG00000019302	Atp6v0a1	AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1	ATPase, H+ transporting, lysosomal V0 subunit A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71489892-4	chr17	71489415	71490415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-14572.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	64.5	167.0	101.0	24.5	81.0	73.0
Merged-chr10-81106187-8	chr10	81105727	81106727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347144, exon 1 of 11)	exon (NM_001347144, exon 1 of 11)	312.0	NM_001358539	26396.0	Mm.275436	NM_023138	ENSMUSG00000035027	Map2k2	AA589381|MEK2|MK2|Prkmk2	mitogen-activated protein kinase kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52925288-4	chr2	52924789	52925789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	67421.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118740163-4	chr7	118739654	118740654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027815)	promoter-TSS (NM_027815)	-117.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	45.5	95.5	105.5	27.5	118.0	67.0
Merged-chr7-27178564-2	chr7	27178064	27179064	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_029391, intron 1 of 7)	intron (NM_029391, intron 1 of 7)	319.0	NM_029391	19342.0	Mm.482114	NM_029391	ENSMUSG00000053291	Rab4b	1500031G17Rik	RAB4B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128355910-4	chr6	128355406	128356406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011657)	promoter-TSS (NM_011657)	-55.0	NM_011657	22158.0	Mm.291783	NM_011657	ENSMUSG00000001521	Tulp3	2310022L06Rik|AI316887	tubby-like protein 3	protein-coding	0.0	2.5	0.5	0.0	0.0	0.0
Merged-chr13-73604782-4	chr13	73604274	73605274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146047, intron 1 of 16)	intron (NM_146047, intron 1 of 16)	772.0	NM_146047	218335.0	Mm.30099	NM_146047	ENSMUSG00000021610	Clptm1l	C130052I12Rik|Crr9	CLPTM1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-55627302-4	chr3	55626790	55627790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030595, intron 57 of 57)	intron (NM_030595, intron 57 of 57)	-155220.0	NM_010750	17116.0	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-30778940-4	chr10	30778443	30779443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 1 of 14)	Lx7|LINE|L1	24383.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75018725-4	chr18	75018223	75019223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027727)	promoter-TSS (NM_027727)	-49.0	NM_027727	69190.0	Mm.173826	NM_027727	ENSMUSG00000035765	Dym	1810041M12Rik|4933427L07Rik|C030019K18Rik	dymeclin	protein-coding	30.5	25.0	33.5	19.5	27.5	24.5
Merged-chr10-69184984-2	chr10	69184484	69185484	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-23568.0	NM_001252636	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128337656-4	chr10	128337147	128338147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026444)	promoter-TSS (NM_026444)	-80.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-135350365-3	chr6	135349855	135350855	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12576.0	NM_010128	13730.0	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	1.0	0.0	0.5	6.5	10.0	10.0
Merged-chr10-60294466-2	chr10	60293966	60294966	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011179, intron 4 of 14)	intron (NM_011179, intron 4 of 14)	10005.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-86990766-4	chr10	86990264	86991264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 3 of 68)	intron (NM_138673, intron 3 of 68)	17178.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	4.0	0.0	3.0	2.5	1.0	5.5
Merged-chr11-59191907-4	chr11	59191430	59192430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008193)	promoter-TSS (NM_008193)	22.0	NM_008193	14923.0	Mm.3624	NM_008193	ENSMUSG00000020444	Guk1	AA409738|AL033299|AL033300|AV026611|Gmk|Guk-1	guanylate kinase 1	protein-coding	136.0	259.5	213.5	103.5	283.0	185.0
Merged-chr16-30416060-4	chr16	30415561	30416561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27531.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	91.5	247.5	166.5	109.5	201.0	171.0
Merged-chr7-45013988-2	chr7	45013488	45014488	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008422, intron 1 of 10)	intron (NM_001008422, intron 1 of 10)	-1501.0	NR_106021	102466218.0		NR_106021	ENSMUSG00000098839	Mir7054	Gm27557|mmu-mir-7054	microRNA 7054	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-140912430-4	chr7	140911947	140912947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6383.0	NR_015583	212965.0	Mm.387212	NR_015583	ENSMUSG00000109628	BC024386	BC039766	cDNA sequence BC023486	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81399961-2	chr10	81399461	81400461	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008688, exon 10 of 10)	3' UTR (NM_008688, exon 10 of 10)	6897.0	NM_001099917	72273.0	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-11839441-4	chr18	11838915	11839915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045421)	promoter-TSS (NR_045421)	-38.0	NR_045421	621998.0	Mm.353277	NR_045421		Gm6277	-	predicted gene 6277	ncRNA	26.5	36.5	39.5	18.5	44.5	63.5
Merged-chr12-85608935-2	chr12	85608435	85609435	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 2 of 3)	intron (NM_001205053, intron 2 of 3)	8917.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121564595-4	chr5	121564100	121565100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18708.0	NM_010765	17165.0	Mm.272206	NM_010765	ENSMUSG00000029454	Mapkapk5	MK5|PRAK	MAP kinase-activated protein kinase 5	protein-coding	5.5	15.5	20.0	8.5	11.5	22.0
Merged-chr17-72918280-4	chr17	72917793	72918793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029999)	promoter-TSS (NM_029999)	-12.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	27.0	39.0	37.0	24.0	35.5	33.5
Merged-chr4-8535628-4	chr4	8535129	8536129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021518)	promoter-TSS (NM_021518)	-15.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	0.0	3.5	3.5	0.0	3.0	4.0
Merged-chr15-58888999-4	chr15	58888485	58889485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175226)	promoter-TSS (NM_175226)	-244.0	NM_175226	75841.0	Mm.4537	NM_175226	ENSMUSG00000037075	Rnf139	4930555P18Rik	ring finger protein 139	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-85328547-4	chr9	85328055	85329055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1405.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	36.0	96.0	44.0	38.0	97.0	40.5
Merged-chr11-120634948-2	chr11	120634448	120635448	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_144795)	TTS (NM_144795)	-1401.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-109017332-4	chr9	109016830	109017830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 9 of 13)	intron (NR_153430, intron 9 of 13)	-21237.0	NM_001284332	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6778446-4	chr17	6777939	6778939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 1 of 12)	intron (NM_009510, intron 1 of 12)	4341.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165319702-4	chr2	165319174	165320174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080287, intron 1 of 20)	intron (NM_080287, intron 1 of 20)	1152.0	NM_001302752	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144716060-4	chr3	144715544	144716544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 1 of 10)	intron (NM_001282037, intron 1 of 10)	4291.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56446849-2	chr18	56446349	56447349	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026240, intron 1 of 13)	B2_Mm2|SINE|B2	14717.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-21935665-4	chr3	21935148	21936148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-141004.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76870913-2	chr15	76870413	76871413	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001007568, exon 1 of 4)	5' UTR (NM_001007568, exon 1 of 4)	522.0	NM_001007568	71591.0	Mm.38195	NM_001007568	ENSMUSG00000022526	Zfp251	9130001M19Rik|AV339307	zinc finger protein 251	protein-coding	4.0	4.5	14.5	8.5	3.5	5.0
Merged-chr5-45450388-4	chr5	45449905	45450905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024236)	promoter-TSS (NM_024236)	-176.0	NM_024236	110391.0	Mm.30204	NM_024236	ENSMUSG00000015806	Qdpr	2610008L04Rik|D5Ertd371e|Dhpr|PKU2	quinoid dihydropteridine reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87885747-4	chr3	87885243	87886243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033573)	promoter-TSS (NM_033573)	-181.0	NM_033573	94315.0	Mm.35089	NM_033573	ENSMUSG00000004895	Prcc	-	papillary renal cell carcinoma (translocation-associated)	protein-coding	24.0	58.5	44.0	19.0	34.5	47.5
Merged-chr17-84408892-4	chr17	84408373	84409373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 22 of 37)	intron (NM_183021, intron 22 of 37)	57335.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-80885635-4	chr13	80885142	80886142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153411)	promoter-TSS (NR_153411)	-453.0	NR_153411	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59557382-4	chr13	59556887	59557887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284218)	promoter-TSS (NM_001284218)	-40.0	NM_023328	67269.0	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	0.0	0.0	2.5	0.0	5.0	0.0
Merged-chr17-47694925-4	chr17	47694447	47695447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290337)	promoter-TSS (NM_001290337)	-211.0	NM_001290337	381104.0	Mm.392206	NM_001290337	ENSMUSG00000096549	Prickle4	Gm939	prickle planar cell polarity protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122310388-4	chr7	122309893	122310893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	21268.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28694889-4	chr17	28694382	28695382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	2314.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4218163-4	chr11	4217663	4218663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028022)	promoter-TSS (NM_028022)	-88.0	NM_028022	71962.0	Mm.7852	NM_028022	ENSMUSG00000020424	Gatsl3	2410008K03Rik|Castor1	GATS protein-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126758089-4	chr8	126757615	126758615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90905.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	13.0	26.5	14.5	13.0	31.5	11.5
Merged-chr10-118868613-2	chr10	118868100	118869100	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001014390, intron 1 of 2)	CpG-1533	303.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-49424997-4	chr2	49424505	49425505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26481.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40666025-4	chr19	40665533	40666533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	6263.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-53597391-2	chr10	53596891	53597891	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025541, intron 1 of 3)	CpG	430.0	NM_025541	66403.0	Mm.272989	NM_025541	ENSMUSG00000019857	Asf1a	2310079C17Rik|C79052	anti-silencing function 1A histone chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24720491-1	chr17	24719991	24720991	+	1000.0	f1_balb.idr	promoter-TSS (NR_027900)	promoter-TSS (NR_027900)	-298.0	NR_002897	104366.0	Mm.157452	NR_002897	ENSMUSG00000077709	Snora64	MBI-29|Rnu64	small nucleolar RNA, H/ACA box 64	snoRNA	227.5	385.0	400.0	286.5	500.0	427.0
Merged-chr2-160452166-4	chr2	160451681	160452681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85116.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	9.0	7.5	0.5	9.0	7.5	0.5
Merged-chr1-178342249-4	chr1	178341756	178342756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4441.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67260678-4	chr5	67260174	67261174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028975, exon 1 of 8)	5' UTR (NM_028975, exon 1 of 8)	109.0	NM_030108	67878.0	Mm.23217	NM_028975	ENSMUSG00000037720	Tmem33	1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83	transmembrane protein 33	protein-coding	42.5	129.5	135.0	45.5	133.5	101.5
Merged-chr5-90771545-4	chr5	90771052	90772052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019932)	promoter-TSS (NM_019932)	-883.0	NM_019932	56744.0	Mm.332490	NM_019932	ENSMUSG00000029373	Pf4	Cxcl4|Scyb4	platelet factor 4	protein-coding	75.5	112.5	96.0	69.5	77.5	90.0
Merged-chr13-58158745-4	chr13	58158253	58159253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198004, intron 1 of 4)	B3|SINE|B2	1104.0	NM_198004	75731.0	Mm.293919	NM_198004	ENSMUSG00000050002	Idnk	5133401N09Rik	idnK gluconokinase homolog (E. coli)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145822143-4	chr2	145821648	145822648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	36032.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3198578-4	chr5	3198069	3199069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-145324.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166450051-2	chr2	166449551	166450551	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_015558, intron 1 of 2)	intron (NR_015558, intron 1 of 2)	2600.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117216264-4	chr10	117215780	117216780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026570, intron 6 of 6)	intron (NM_026570, intron 6 of 6)	8227.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99942707-4	chr12	99942208	99943208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028354, intron 14 of 15)	intron (NM_028354, intron 14 of 15)	-21791.0	NM_001164426	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-13361838-4	chr14	13361355	13362355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028052, intron 2 of 5)	intron (NM_028052, intron 2 of 5)	77075.0	NM_028052	72003.0	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34607875-4	chr19	34607395	34608395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005858)	promoter-TSS (NM_001005858)	-62.0	NM_001005858	667370.0	Mm.271850	NM_001005858	ENSMUSG00000062488	Ifit3b	I830012O16Rik	interferon-induced protein with tetratricopeptide repeats 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62382432-4	chr15	62381933	62382933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-162982.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.0	0.0	1.5	3.5	13.0	3.0
Merged-chr16-48993734-2	chr16	48993234	48994234	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172616)	promoter-TSS (NM_172616)	378.0	NM_027341	224170.0	Mm.275138	NM_027341	ENSMUSG00000064061	Dzip3	2310047C04Rik|2A-HUB|6430549P11Rik|A230104G20	DAZ interacting protein 3, zinc finger	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88731812-2	chr10	88731312	88732312	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037166)	promoter-TSS (NM_001037166)	398.0	NM_025859	104303.0	Mm.291247	NM_025859	ENSMUSG00000060904	Arl1	2310008D22Rik|AU019749	ADP-ribosylation factor-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-13069799-4	chr6	13069319	13070319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027992)	promoter-TSS (NM_027992)	60.0	NM_027992	71900.0	Mm.27742	NM_027992	ENSMUSG00000029571	Tmem106b	2310036D22Rik|5830455K21Rik|6430519M21Rik|AI428776|AI661344	transmembrane protein 106B	protein-coding	0.0	10.0	6.0	2.0	8.5	5.0
Merged-chr6-38346018-4	chr6	38345492	38346492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028864, intron 1 of 8)	intron (NM_028864, intron 1 of 8)	8611.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-56817397-2	chr14	56816897	56817897	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5408.0	NR_152252	100503842.0	Mm.297636	NR_152252	ENSMUSG00000100017	2410022M11Rik	-	RIKEN cDNA 2410022M11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58224497-4	chr11	58223980	58224980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17D2|LTR|ERVK	9503.0	NM_019440	54396.0	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	26.5	32.5	32.0	10.5	38.0	14.0
Merged-chr15-99820108-4	chr15	99819617	99820617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023063)	promoter-TSS (NM_023063)	32.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	4.5	21.0	10.5	4.0	10.0	14.5
Merged-chr10-84917262-4	chr10	84916857	84917857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183172)	promoter-TSS (NM_183172)	-256.0	NM_001013441	237422.0	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70616860-4	chr8	70616369	70617369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153074)	promoter-TSS (NM_153074)	25.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	109.5	364.0	161.5	61.0	155.5	90.5
Merged-chr19-17314710-4	chr19	17314168	17315168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	24837.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	20.5	31.5	39.5	45.5	42.0	25.5
Merged-chr2-30124551-4	chr2	30124027	30125027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290503)	promoter-TSS (NM_001290503)	84.0	NM_178694	227693.0	Mm.44526	NM_178694	ENSMUSG00000039686	Zer1	C230075L19Rik|Zyg11bl	zyg-11 related, cell cycle regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3424014-4	chr2	3423515	3424515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146114)	promoter-TSS (NM_146114)	-116.0	NM_146114	227525.0	Mm.23483	NM_146114	ENSMUSG00000026648	Dclre1c	9930121L06Rik|AI661365|Art|Snm1l	DNA cross-link repair 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-36916963-4	chr10	36916462	36917462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57582.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-53825109-4	chr1	53824589	53825589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 28 of 28)	intron (NM_001001883, intron 28 of 28)	-24335.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	29.5	67.0	46.0	21.5	23.5	27.5
Merged-chr8-83740299-4	chr8	83739798	83740798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 1 of 19)	intron (NM_011925, intron 1 of 19)	1013.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	103.0	320.0	191.5	75.0	326.0	170.5
Merged-chr8-126844731-4	chr8	126844221	126845221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4299.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39782959-2	chr6	39782459	39783459	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27977.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-140983535-4	chr4	140983019	140984019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3354.0	NM_029097	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-26200314-2	chr11	26199814	26200814	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027973, intron 1 of 5)	intron (NR_027973, intron 1 of 5)	-1926.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-157039268-4	chr1	157038791	157039791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69359.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	51.5	111.5	60.5	37.0	84.5	73.0
Merged-chr2-154892850-4	chr2	154892265	154893265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026030, exon 1 of 9)	5' UTR (NM_026030, exon 1 of 9)	141.0	NM_026030	67204.0	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	48.5	154.5	114.5	56.0	140.0	106.0
Merged-chr2-6478053-2	chr2	6477553	6478553	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125317.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-62837398-4	chr14	62836918	62837918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175546)	promoter-TSS (NM_175546)	-272.0	NM_175546	268752.0	Mm.1960	NM_175546	ENSMUSG00000014547	Wdfy2	5830485M08|B130024L21Rik|ProF|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding	9.0	9.0	12.5	9.0	12.0	12.0
Merged-chr1-37491827-4	chr1	37491275	37492275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 4 of 15)	intron (NM_173870, intron 4 of 15)	-3170.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116683240-4	chr4	116682742	116683742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2357.0	NM_011034	18477.0	Mm.30929	NM_011034	ENSMUSG00000028691	Prdx1	MSP23|NkefA|OSF-3|OSF3|PAG|Paga|PrdxI|PrxI|TDX2|TPxA|Tdpx2|prx1	peroxiredoxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-14611346-4	chr3	14610847	14611847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347206)	promoter-TSS (NM_001347206)	-91.0	NM_001099674	69126.0	Mm.389020	NM_001099674	ENSMUSG00000078784	1810022K09Rik	AI746582|AL023036	RIKEN cDNA 1810022K09 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67427141-2	chr5	67426641	67427641	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164806, exon 1 of 5)	exon (NM_001164806, exon 1 of 5)	658.0	NM_001164806	666938.0	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-97659577-4	chr1	97659077	97660077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133825, intron 1 of 2)	intron (NM_133825, intron 1 of 2)	2099.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9735017-4	chr18	9734500	9735500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	27352.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	23.0	21.0	21.5	26.5	61.5	44.5
Merged-chr2-152810366-4	chr2	152809888	152810888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	18101.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39781130-4	chr6	39780617	39781617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29819.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96482214-2	chr9	96481714	96482714	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-3539.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145730688-4	chr2	145730136	145731136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 2 of 3)	intron (NR_033220, intron 2 of 3)	29441.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70618519-1	chr8	70618019	70619019	+	1000.0	f1_balb.idr	intron (NM_153074, intron 2 of 2)	intron (NM_153074, intron 2 of 2)	1675.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	166.0	360.5	268.5	104.5	350.5	266.0
Merged-chr8-71625287-4	chr8	71624804	71625804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_146211)	TTS (NM_146211)	5802.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	27.5	15.5	13.5	12.5	22.5	20.0
Merged-chr7-12834986-10	chr7	12834510	12835510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001360576, exon 1 of 8)	5' UTR (NM_001360576, exon 1 of 8)	249.0	NM_001360576	65020.0	Mm.292297	NM_022981	ENSMUSG00000058638	Zfp110	2900024E01Rik|N28112|NRIF|Nrif1	zinc finger protein 110	protein-coding	65.5	166.0	157.5	78.0	93.0	127.5
Merged-chr17-24960362-1	chr17	24959862	24960862	+	1000.0	f1_c57bl6.idr	TTS (NM_020608)	TTS (NM_020608)	261.0	NM_198937	52009.0	Mm.371601	NM_198937	ENSMUSG00000024165	Jpt2	2810430B18Rik|AL022629|C16orf34|D17Ertd441e|Hn1l	Jupiter microtubule associated homolog 2	protein-coding	20.0	19.5	17.0	21.5	30.0	39.0
Merged-chr6-134425665-4	chr6	134425151	134426151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355686, intron 2 of 5)	intron (NM_001355686, intron 2 of 5)	11223.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	52.5	97.0	73.5	64.5	133.5	83.5
Merged-chr7-122945369-4	chr7	122944867	122945867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25092.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91847069-2	chr16	91846569	91847569	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 19 of 28)	intron (NM_001110275, intron 19 of 28)	84561.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17694446-8	chr6	17693841	17694841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001289626, exon 1 of 15)	exon (NM_001289626, exon 1 of 15)	347.0	NM_001289625	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	56.5	182.0	137.0	68.5	198.5	103.0
Merged-chr14-19950952-4	chr14	19950436	19951436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285909, intron 3 of 5)	ORR1C1|LTR|ERVL-MaLR	25757.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94505536-4	chr10	94505068	94506068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-9289.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4969627-4	chr16	4969126	4970126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073370, intron 4 of 8)	intron (NR_073370, intron 4 of 8)	5338.0	NM_001271586	74684.0	Mm.374835	NM_001271586	ENSMUSG00000022543	4930451G09Rik	-	RIKEN cDNA 4930451G09 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-137558994-4	chr6	137558491	137559491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271588, intron 1 of 20)	intron (NM_001271588, intron 1 of 20)	12018.0	NM_001271595	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115545059-1	chr5	115544559	115545559	+	1000.0	f1_balb.idr	intron (NM_011223, intron 3 of 10)	intron (NM_011223, intron 3 of 10)	-14408.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	0.0	13.5	2.5	1.0	5.0	3.5
Merged-chr14-103481764-4	chr14	103481259	103482259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31582.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73441353-4	chr14	73440858	73441858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56069.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.0	4.5	0.0	15.0	101.0	33.5
Merged-chr5-110108265-4	chr5	110107771	110108771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145147)	promoter-TSS (NM_145147)	-74.0	NM_145147	107999.0	Mm.86267	NM_145147	ENSMUSG00000033434	Gtpbp6	AV119224|Pgbpll|pgpl	GTP binding protein 6 (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170589822-4	chr1	170589334	170590334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001109985)	promoter-TSS (NM_001109985)	15.0	NM_001109985	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30698096-4	chr13	30697602	30698602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134068, intron 4 of 7)	intron (NM_134068, intron 4 of 7)	38043.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60709008-2	chr13	60708508	60709508	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	intron (NM_134062, intron 3 of 26)	77356.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	3.0	0.0	3.5	11.0	11.0	6.0
Merged-chr8-27030540-4	chr8	27030031	27031031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153592, intron 6 of 11)	MTD|LTR|ERVL-MaLR	6732.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	11.0	4.5	1.5	7.0	7.0	4.0
Merged-chr1-134557081-4	chr1	134556572	134557572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3106.0	NM_152895	75605.0	Mm.28995	NM_152895	ENSMUSG00000042207	Kdm5b	2010009J12Rik|2210016I17Rik|AW556288|D1Ertd202e|Jarid1b|PLU-1|PUT1|Plu1|RBBP2H1A|Rb-Bp2|mKIAA4034	lysine (K)-specific demethylase 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-26210224-4	chr11	26209741	26210741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027973, intron 1 of 5)	CpG	335.0	NR_027973	70626.0	Mm.379180	NM_027486		5730522E02Rik	-	RIKEN cDNA 5730522E02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117424131-2	chr8	117423631	117424631	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 6 of 20)	RSINE1|SINE|B4	-28892.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4746289-2	chr18	4745789	4746789	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66197.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32239473-4	chr4	32238949	32239949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-177986.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-57826206-4	chr14	57825673	57826673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198605)	promoter-TSS (NM_198605)	-10.0	NM_198605	219114.0	Mm.30173	NM_198605	ENSMUSG00000021965	Ska3	F630043A04Rik	spindle and kinetochore associated complex subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110845301-4	chr12	110844804	110845804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4275.0	NR_152102	66709.0	Mm.390504	NR_152102		4921507G05Rik	-	RIKEN cDNA 4921507G05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116202025-2	chr11	116201525	116202525	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027107, intron 1 of 3)	RSINE1|SINE|B4	-2980.0	NM_015729	11430.0	Mm.356689	NM_015729	ENSMUSG00000020777	Acox1	AOX|Acox|D130055E20Rik|Paox	acyl-Coenzyme A oxidase 1, palmitoyl	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-9006318-4	chr12	9005810	9006810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172470, intron 14 of 27)	intron (NM_172470, intron 14 of 27)	-23687.0	NM_029321	75516.0	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89644551-4	chr6	89644050	89645050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153162, intron 1 of 15)	CpG	562.0	NM_001178059	232223.0	Mm.229332	NM_153162	ENSMUSG00000000811	Txnrd3	AI196535|TGR|TR2	thioredoxin reductase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-28261484-2	chr6	28260984	28261984	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081678, exon 1 of 6)	5' UTR (NM_001081678, exon 1 of 6)	117.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5661169-4	chr19	5660667	5661667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164568, intron 1 of 15)	intron (NM_001164568, intron 1 of 15)	2540.0	NM_001164482	20469.0	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120618662-2	chr5	120618162	120619162	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028041, exon 4 of 20)	exon (NM_028041, exon 4 of 20)	5532.0	NM_028041	71990.0	Mm.24495	NM_028041	ENSMUSG00000029599	Ddx54	2410015A15Rik|AI414901|DP97	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-85749407-4	chr9	85748883	85749883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081282)	promoter-TSS (NM_001081282)	-49.0	NM_175371	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-105117746-1	chr13	105117246	105118246	+	1000.0	f0_balb.idr	intron (NM_025751, intron 5 of 7)	L1_Mur2|LINE|L1	35624.0	NM_025751	66763.0	Mm.109093	NM_025751	ENSMUSG00000021718	4933425L06Rik	-	RIKEN cDNA 4933425L06 gene	protein-coding	0.5	0.0	0.0	3.0	0.0	1.0
Merged-chr8-69189105-4	chr8	69188602	69189602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-19944.0	NM_001013379	234358.0	Mm.334577	NM_001013379	ENSMUSG00000059897	Zfp930	-	zinc finger protein 930	protein-coding	4.0	15.0	12.0	4.0	14.5	10.5
Merged-chr8-82398721-4	chr8	82398229	82399229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254747, intron 1 of 7)	intron (NM_001254747, intron 1 of 7)	3857.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	62.5	151.0	113.5	51.5	195.5	118.0
Merged-chr12-116434928-3	chr12	116434427	116435427	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133762, intron 17 of 28)	intron (NM_133762, intron 17 of 28)	29525.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	88.5	133.5	186.0	13.5	23.5	40.0
Merged-chr7-19573345-4	chr7	19572819	19573819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027189)	promoter-TSS (NM_027189)	24.0	NM_027189	69731.0	Mm.24540	NM_027189	ENSMUSG00000044709	Gemin7	2400008I04Rik|AI120175|AI461688	gem nuclear organelle associated protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133197440-2	chr4	133196940	133197940	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153423, exon 9 of 9)	3' UTR (NM_153423, exon 9 of 9)	1785.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	2.5	4.0	2.5	0.0	19.0	5.5
Merged-chr15-25632366-4	chr15	25631892	25632892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 1 of 40)	intron (NM_019472, intron 1 of 40)	9842.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141266108-1	chr7	141265608	141266608	+	1000.0	f0_balb.idr	intron (NM_001252601, intron 1 of 9)	intron (NM_001252601, intron 1 of 9)	316.0	NM_001252601	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-52383899-4	chr5	52383391	52384391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256059, intron 11 of 11)	intron (NM_001256059, intron 11 of 11)	20087.0	NM_011435	20657.0	Mm.2407	NM_011435	ENSMUSG00000072941	Sod3	AI314465|EC-SOD	superoxide dismutase 3, extracellular	protein-coding	11.0	1.0	0.0	0.0	2.0	0.0
Merged-chr14-73388717-4	chr14	73388189	73389189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3400.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76818196-4	chr15	76817707	76818707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168288)	promoter-TSS (NM_001168288)	-37.0	NM_198420	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	6.5	21.5	14.5	7.5	24.5	17.5
Merged-chr6-17610262-2	chr6	17609762	17610762	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-26748.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79530531-4	chr11	79530037	79531037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033711)	promoter-TSS (NM_001033711)	72.0	NM_146023	101488212.0	Mm.439665	NM_146023	ENSMUSG00000070354	Evi2	Evi2a-evi2b|Gm21975	ecotropic viral integration site 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41339393-4	chr19	41338910	41339910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	45660.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73780091-4	chr12	73779508	73780508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121316.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71165181-4	chr17	71164673	71165673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18359.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	5.0	33.5	16.5	9.0	34.0	13.0
Merged-chr17-23740411-4	chr17	23739895	23740895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023824)	promoter-TSS (NM_023824)	-65.0	NM_023824	76498.0	Mm.491253	NM_023824	ENSMUSG00000023909	Paqr4	1500004C10Rik	progestin and adipoQ receptor family member IV	protein-coding	11.5	19.0	18.0	39.5	42.5	62.0
Merged-chr2-153784199-4	chr2	153783702	153784702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036629, intron 3 of 7)	MLT1E1A|LTR|ERVL-MaLR	3323.0	NR_036629	100504221.0	Mm.246778	NM_177849	ENSMUSG00000044083	Efcab8	A630008I04|EG329541	EF-hand calcium binding domain 8	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69671391-4	chr11	69670883	69671883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159375, intron 1 of 10)	CpG	1040.0	NM_144958	13681.0	Mm.26680	NM_144958	ENSMUSG00000059796	Eif4a1	BM-010|Ddx2a|Eif4	eukaryotic translation initiation factor 4A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29356449-2	chr19	29355949	29356949	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026362, intron 3 of 5)	intron (NM_026362, intron 3 of 5)	5422.0	NM_026362	67759.0	Mm.275511	NM_026362	ENSMUSG00000016495	Plgrkt	1110007H22Rik|5033414D02Rik|AI852040|Plg-R(KT)|Plg-RKT	plasminogen receptor, C-terminal lysine transmembrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-88197412-3	chr11	88196913	88197913	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291270, intron 1 of 4)	intron (NM_001291270, intron 1 of 4)	3307.0	NM_001291270	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	1.5	4.5	5.0	0.5	2.0	5.5
Merged-chr3-95457907-4	chr3	95457334	95458334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037737, intron 3 of 21)	intron (NM_001037737, intron 3 of 21)	23444.0	NM_001037737	11863.0	Mm.250265	NM_009709	ENSMUSG00000015522	Arnt	D3Ertd557e|Drnt|ESTM42|Hif1b|W08714|bHLHe2|mKIAA4051	aryl hydrocarbon receptor nuclear translocator	protein-coding	6.5	3.5	9.5	3.0	14.0	16.0
Merged-chr17-31856027-4	chr17	31855572	31856572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010831)	promoter-TSS (NM_010831)	-268.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	7.0	15.0	8.0	6.0	34.5	11.0
Merged-chr11-3176659-2	chr11	3176117	3177117	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 6 of 32)	B3|SINE|B2	16846.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35199953-4	chr9	35199460	35200460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177847)	promoter-TSS (NM_001177847)	5.0	NM_001177846	117149.0	Mm.23987	NM_054096	ENSMUSG00000032041	Tirap	AA407980|C130027E04Rik|Mal|Tlr4ap|Wyatt	toll-interleukin 1 receptor (TIR) domain-containing adaptor protein	protein-coding	3.5	9.0	5.5	3.5	9.0	5.5
Merged-chr5-145114300-4	chr5	145113796	145114796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023142)	promoter-TSS (NM_023142)	40.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27411868-4	chr2	27411386	27412386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	15722.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0.5	1.5	0.5	4.0	7.0	10.0
Merged-chr16-24393869-4	chr16	24393381	24394381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037954)	promoter-TSS (NR_037954)	-226.0	NR_037954	68841.0	Mm.361995	NR_037954		Lppos	1110054M08Rik|AI481106	LIM domain containing preferred translocation partner in lipoma, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26693951-4	chr8	26693451	26694451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	130472.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13553148-4	chr10	13552651	13553651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347361)	promoter-TSS (NM_001347361)	-9.0	NM_001347361	56535.0	Mm.282711	NM_019961	ENSMUSG00000019809	Pex3	1700014F15Rik|2810027F19Rik|2900010N04Rik	peroxisomal biogenesis factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82570214-4	chr11	82569706	82570706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-63147.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103569955-4	chr2	103569476	103570476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	3666.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	7.5	0.0	1.0	0.0	0.0	0.0
Merged-chr19-60790103-3	chr19	60789610	60790610	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010123, intron 1 of 21)	CpG	583.0	NM_010123	13669.0	Mm.2238	NM_010123	ENSMUSG00000024991	Eif3a	A830012B05Rik|Csma|Eif3|Eif3s10|mKIAA0139	eukaryotic translation initiation factor 3, subunit A	protein-coding	67.0	105.5	96.0	42.5	121.0	78.5
Merged-chr12-111933491-4	chr12	111932984	111933984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10998.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158132640-2	chr2	158132140	158133140	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 4 of 12)	intron (NM_009373, intron 4 of 12)	13752.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73644146-4	chr15	73643652	73644652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19408.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108478307-3	chr6	108477808	108478808	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 46 of 61)	intron (NM_010585, intron 46 of 61)	-11435.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-96177197-4	chr5	96176695	96177695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-15205.0	NM_144910	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-51866492-4	chr12	51865994	51866994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36958.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	85.5	177.5	150.5	106.5	290.0	191.0
Merged-chr6-146686974-4	chr6	146686476	146687476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29758.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	8.5	7.0	4.5	0.0	4.5	1.5
Merged-chr13-119840221-2	chr13	119839721	119840721	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-10004.0	NM_001001449	380878.0	Mm.327311	NM_001001449	ENSMUSG00000094237	AF067063	-	cDNA sequence AF067063	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-28958009-4	chr13	28957511	28958511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4312.0	NM_009238	20677.0	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-52844910-4	chr1	52844395	52845395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146108)	promoter-TSS (NM_146108)	-143.0	NM_146108	227095.0	Mm.222063	NM_146108	ENSMUSG00000041426	Hibch	2610509I15Rik|HIBYL-COA-H	3-hydroxyisobutyryl-Coenzyme A hydrolase	protein-coding	17.0	44.5	53.0	19.0	44.5	51.0
Merged-chr4-149323761-2	chr4	149323261	149324261	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10878.0	NR_131918	74310.0	Mm.440455	NR_131918	ENSMUSG00000085286	Ube4bos3	1700121F15Rik	ubiquitination factor E4B, opposite strand 3	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54382819-4	chr14	54382304	54383304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	21963.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	280.5	422.5	436.5	224.0	654.0	405.5
Merged-chr5-123455060-2	chr5	123454560	123455560	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133917, exon 17 of 17)	3' UTR (NM_133917, exon 17 of 17)	27041.0	NM_029594	76399.0	Mm.75049	NM_029594	ENSMUSG00000029437	Il31	1700013B14Rik	interleukin 31	protein-coding	0.0	0.0	0.0	0.0	4.5	0.0
Merged-chr14-31414314-2	chr14	31413814	31414814	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	3363.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107334020-4	chr3	107333517	107334517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045807)	promoter-TSS (NM_001045807)	-728.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120179874-4	chr6	120179376	120180376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-13947.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	67.0	99.0	83.0	43.5	74.0	63.5
Merged-chr7-45570378-4	chr7	45569885	45570885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243052)	promoter-TSS (NM_001243052)	232.0	NM_009737	12036.0	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat(m)|Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79145527-2	chr11	79145027	79146027	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	946.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93091062-4	chr16	93090565	93091565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	262124.0	NR_040486	69857.0	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	0.0	0.0	0.5	4.5	1.5	0.5
Merged-chr7-137313566-2	chr7	137313066	137314066	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010096, exon 2 of 16)	exon (NM_010096, exon 2 of 16)	879.0	NM_001113415	13593.0	Mm.258708	NM_010096	ENSMUSG00000010476	Ebf3	3110018A08Rik|O/E-2|mKIAA4201	early B cell factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3429213-2	chr2	3428713	3429713	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302674, intron 2 of 13)	intron (NM_001302674, intron 2 of 13)	5082.0	NM_001302684	227525.0	Mm.23483	NM_146114	ENSMUSG00000026648	Dclre1c	9930121L06Rik|AI661365|Art|Snm1l	DNA cross-link repair 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115641361-4	chr11	115640843	115641843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13048.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106714394-4	chr1	106713891	106714891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177410)	promoter-TSS (NM_177410)	-101.0	NM_177410	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166180360-2	chr2	166179860	166180860	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24677.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-90370402-2	chr6	90369902	90370902	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_030260, exon 1 of 6)	exon (NM_030260, exon 1 of 6)	908.0	NM_030260	80292.0	Mm.100116	NM_030260	ENSMUSG00000034430	Zxdc	A930012H20|B930086F11Rik|BC003332	ZXD family zinc finger C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91711073-2	chr12	91710573	91711573	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	75363.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102439829-4	chr12	102439317	102440317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011175)	promoter-TSS (NM_011175)	-4.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	115.5	239.5	200.5	139.5	243.0	220.0
Merged-chr6-134673892-4	chr6	134673383	134674383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170479, intron 2 of 3)	MTEa|LTR|ERVL-MaLR	32943.0	NM_026371	67774.0	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	6.5	25.5	8.0	6.0	5.0	11.0
Merged-chr7-16816277-4	chr7	16815767	16816767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_133789, exon 1 of 18)	5' UTR (NM_133789, exon 1 of 18)	378.0	NM_001039878	97387.0	Mm.21612	NM_133789	ENSMUSG00000030374	Strn4	C80611|ZIN|zinedin	striatin, calmodulin binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139380956-1	chr5	139380456	139381456	+	1000.0	f0_c57.idr	TTS (NR_033147)	TTS (NR_033147)	317.0	NM_030258	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80035054-4	chr15	80034562	80035562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20254.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	98.0	168.0	146.5	102.5	247.5	193.5
Merged-chr14-79481142-5	chr14	79480659	79481659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007920)	promoter-TSS (NM_007920)	-35.0	NM_007920	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154658068-4	chr2	154657556	154658556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	1030.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	39.5	67.0	42.0	21.0	68.5	48.0
Merged-chr17-71598773-4	chr17	71598301	71599301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015549)	promoter-TSS (NR_015549)	-40.0	NR_027952	68789.0	Mm.75202	NR_015549	ENSMUSG00000085492	Trmt61b	1110039F03Rik|623451|Gm6431	tRNA methyltransferase 61B	ncRNA	92.5	217.0	198.0	91.0	253.5	239.5
Merged-chr2-39005110-4	chr2	39004589	39005589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025592)	promoter-TSS (NM_025592)	42.0	NM_025592	66489.0	Mm.345333	NM_025592	ENSMUSG00000062997	Rpl35	2410039E09Rik	ribosomal protein L35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11596834-4	chr2	11596311	11597311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152824, intron 3 of 11)	intron (NM_152824, intron 3 of 11)	6388.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55754594-4	chr16	55754091	55755091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67547.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44632313-3	chr10	44631771	44632771	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-173523.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12318807-4	chr17	12318311	12319311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045290)	promoter-TSS (NR_045290)	-15.0	NM_001357722	26407.0	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-54173781-2	chr10	54173281	54174281	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97859.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121596752-4	chr10	121596180	121597180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359618, intron 22 of 24)	intron (NM_001359618, intron 22 of 24)	-9886.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	19.0	88.5	76.0	33.5	72.0	54.0
Merged-chr11-75051987-4	chr11	75051501	75052501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 12 of 18)	intron (NM_001002764, intron 12 of 18)	13990.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-35741305-4	chr13	35740810	35741810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001123386)	promoter-TSS (NM_001123386)	-92.0	NM_001123386	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105976399-4	chr1	105975892	105976892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13890.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	7.5	23.0	11.0	8.0	22.0	12.0
Merged-chr3-69060852-2	chr3	69060352	69061352	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-16110.0	NM_025863	66949.0	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	3.0	0.5	2.5	2.5	2.5	0.0
Merged-chr6-114893993-4	chr6	114893507	114894507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	27814.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-107402295-4	chr1	107401790	107402790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20399.0	NM_027548	116872.0	Mm.66015	NM_027548	ENSMUSG00000067001	Serpinb7	4631416M05Rik|megsin|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 7	protein-coding	5.0	5.5	20.5	0.0	6.5	4.5
Merged-chr11-85250511-4	chr11	85249991	85250991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	15325.0	NR_028329	654810.0	Mm.209580	NR_028329	ENSMUSG00000085628	Appbp2os	D630032N06Rik	amyloid beta precursor protein (cytoplasmic tail) binding protein 2, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77531912-4	chr10	77531406	77532406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 1 of 15)	intron (NM_008404, intron 1 of 15)	1558.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41377800-4	chr4	41377298	41378298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355509, intron 3 of 5)	intron (NM_001355509, intron 3 of 5)	25835.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88720843-4	chr5	88720327	88721327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026735)	promoter-TSS (NM_026735)	-44.0	NM_026735	68473.0	Mm.35764	NM_026735	ENSMUSG00000006262	Mob1b	1110003E08Rik|AU015450|B230364F10|Mobkl1a	MOB kinase activator 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-87832274-4	chr10	87831771	87832771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25994.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167807072-2	chr2	167806572	167807572	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	115895.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11038525-4	chr8	11038020	11039020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046017, intron 1 of 4)	intron (NR_046017, intron 1 of 4)	-30090.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-78734450-2	chr14	78733950	78734950	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1721.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13301236-4	chr10	13300743	13301743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	23046.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	120.0	213.0	170.0	58.0	185.0	136.5
Merged-chr2-120027502-4	chr2	120026977	120027977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001114637)	promoter-TSS (NM_001114637)	-6.0	NR_104353	102238433.0	Mm.41467	NR_104353	ENSMUSG00000033852	Gm28042	Jmjd7-pla2g4b	predicted gene, 28042	ncRNA	49.0	86.0	69.0	46.0	95.0	69.5
Merged-chr15-84680983-3	chr15	84680504	84681504	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146061)	promoter-TSS (NM_146061)	6.0	NM_146061	109270.0	Mm.291372	NM_146061	ENSMUSG00000036106	Prr5	AU043908|Arhgap8|C030017C09Rik|C78947|Protor-1|Protor1	proline rich 5 (renal)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99334208-4	chr5	99333695	99334695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-81268.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122444600-4	chr8	122444081	122445081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_015497)	TTS (NR_015497)	925.0	NR_045696	100689703.0	Mm.271989	NR_045696		9330133O14Rik	-	RIKEN cDNA 9330133O14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-9547991-4	chr1	9547480	9548480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175236)	promoter-TSS (NM_175236)	32.0	NM_001357376	76187.0	Mm.28514	NM_175236	ENSMUSG00000025911	Adhfe1	6330565B14Rik|AI043035|Adh8|HOT	alcohol dehydrogenase, iron containing, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88417851-4	chr10	88417347	88418347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004164, intron 5 of 20)	intron (NM_001004164, intron 5 of 20)	38435.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30090498-4	chr7	30089991	30090991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152814)	promoter-TSS (NM_152814)	19.0	NM_152814	72556.0	Mm.441512	NM_152814	ENSMUSG00000078768	Zfp566	2700043M03Rik|mszf4	zinc finger protein 566	protein-coding	21.0	51.0	48.5	61.0	92.0	74.5
Merged-chr11-115708661-4	chr11	115708155	115709155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008163)	promoter-TSS (NM_008163)	-58.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13600954-4	chr8	13600431	13601431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 4 of 23)	intron (NM_009025, intron 4 of 23)	-38470.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-85353067-3	chr10	85352552	85353552	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Zaphod|DNA|hAT-Tip100	-33762.0	NM_028709	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	7.5	24.0	3.5	0.0	0.0	0.5
Merged-chr19-40612351-4	chr19	40611850	40612850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026260)	promoter-TSS (NM_026260)	-16.0	NM_001304721	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103697889-6	chr11	103697323	103698323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019650)	promoter-TSS (NM_019650)	99.0	NR_102396	399609.0	Mm.351922	NR_102388		C130046K22Rik	-	RIKEN cDNA C130046K22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11254232-4	chr4	11253737	11254737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178112)	promoter-TSS (NM_178112)	22.0	NM_178112	72656.0	Mm.246713	NM_178112	ENSMUSG00000040738	Ints8	2810013E07Rik|AV063769|D130008D20Rik	integrator complex subunit 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112274829-2	chr5	112274329	112275329	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1862.0	NM_001326590	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr12-110842451-2	chr12	110841951	110842951	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152102, exon 2 of 2)	non-coding (NR_152102, exon 2 of 2)	1422.0	NR_152102	66709.0	Mm.390504	NR_152102		4921507G05Rik	-	RIKEN cDNA 4921507G05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114770203-1	chr5	114769703	114770703	+	1000.0	f1_balb.idr	intron (NM_001077359, intron 1 of 18)	intron (NM_001077359, intron 1 of 18)	3288.0	NM_019834	26431.0	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	0.0	0.0	1.0	6.5	1.0	1.5
Merged-chr1-156450720-4	chr1	156450182	156451182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 3 of 15)	intron (NM_009230, intron 3 of 15)	23646.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	41.5	145.5	69.5	46.0	131.5	113.5
Merged-chr6-142387131-4	chr6	142386628	142387628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204907)	promoter-TSS (NM_001204907)	-41.0	NM_023042	19691.0	Mm.27407	NM_023042	ENSMUSG00000030243	Recql	RecQ1	RecQ protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4493422-4	chr8	4492918	4493918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026058)	promoter-TSS (NM_026058)	13.0	NM_026058	67260.0	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-115900416-4	chr13	115899843	115900843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	409345.0	NM_021459	16392.0	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	36.0	35.0	47.0	46.5	66.5	68.5
Merged-chr18-56432045-4	chr18	56431566	56432566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026240)	promoter-TSS (NM_026240)	-66.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101908605-2	chr13	101908105	101909105	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-140388.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119898489-4	chr2	119897990	119898990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013720, intron 1 of 23)	intron (NM_013720, intron 1 of 23)	1262.0	NM_013720	29808.0	Mm.87532	NM_013720	ENSMUSG00000033943	Mga	AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5	MAX gene associated	protein-coding	35.0	63.0	29.0	29.5	75.0	63.5
Merged-chr9-85389190-4	chr9	85388699	85389699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62049.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	9.5	41.5	22.0	10.0	42.5	22.0
Merged-chr7-123369563-2	chr7	123369063	123370063	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 1 of 19)	CpG	352.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-57798679-3	chr14	57798178	57799178	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_037238)	TTS (NR_037238)	254.0	NR_037238	100526476.0		NR_037238	ENSMUSG00000092784	Mir3077	mir-3077|mmu-mir-3077	microRNA 3077	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-52080174-4	chr11	52079664	52080664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166654, intron 13 of 13)	intron (NM_001166654, intron 13 of 13)	-18660.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97404768-2	chr11	97404268	97405268	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42217.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25107268-4	chr7	25106764	25107764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163556, intron 5 of 13)	L1MA6|LINE|L1	-10089.0	NR_105855	102465968.0		NR_105855	ENSMUSG00000098441	Mir6537	Gm27808|mmu-mir-6537	microRNA 6537	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90513250-2	chr3	90512750	90513750	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011309, intron 1 of 2)	intron (NM_011309, intron 1 of 2)	1080.0	NM_011309	20193.0	Mm.24662	NM_011309	ENSMUSG00000044080	S100a1	AI266795|S100|S100a	S100 calcium binding protein A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70744442-4	chr8	70743953	70744953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201607, intron 3 of 16)	CpG	-10226.0	NM_001328047	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	14.0	15.5	20.0	8.5	35.0	25.5
Merged-chr17-57104576-3	chr17	57104074	57105074	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009404)	promoter-TSS (NM_009404)	-811.0	NM_009404	21950.0	Mm.41171	NM_009404	ENSMUSG00000035678	Tnfsf9	4-1BB-L|4-1BBL|AI848817|Cd137l|Ly63l	tumor necrosis factor (ligand) superfamily, member 9	protein-coding	0.5	26.0	3.0	0.5	1.0	1.5
Merged-chr5-29378446-4	chr5	29377926	29378926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020295)	promoter-TSS (NM_020295)	-36.0	NM_020295	56873.0	Mm.41572	NM_020295	ENSMUSG00000010721	Lmbr1	1110048D14Rik|AU017641	limb region 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-102615309-3	chr9	102614813	102615813	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001301689, exon 6 of 15)	exon (NM_001301689, exon 6 of 15)	10811.0	NM_001301689	28135.0	Mm.38910	NM_001081122	ENSMUSG00000032534	Cep63	4921501M07|AL450317.13gm1|AW107703|CD20R|D9Mgc41|D9Mgc48e|ET2	centrosomal protein 63	protein-coding	20.0	16.0	22.0	9.5	19.5	6.0
Merged-chr9-78588055-5	chr9	78587499	78588499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276452)	promoter-TSS (NM_001276452)	46.0	NM_172773	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83613451-4	chr6	83612962	83613962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40958.0	NM_001362080	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	10.5	26.0	19.0	14.0	11.0	19.0
Merged-chr1-45906816-4	chr1	45906301	45907301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18793.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120787340-2	chr5	120786840	120787840	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145210, intron 5 of 5)	intron (NM_145210, intron 5 of 5)	8190.0	NM_001347450	231699.0	Mm.379383	NM_145210	ENSMUSG00000066867	Oas1e	C87484|oasl7	2'-5' oligoadenylate synthetase 1E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-88730444-2	chr13	88729944	88730944	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-91028.0	NM_010103	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-69790483-4	chr2	69789997	69790997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028521, intron 2 of 3)	intron (NM_028521, intron 2 of 3)	760.0	NM_028521	73373.0	Mm.9621	NM_028521	ENSMUSG00000027088	Phospho2	1700048E23Rik|AI661517|AU021728|AV006103|Phos2	phosphatase, orphan 2	protein-coding	8.5	46.0	22.0	7.0	10.5	17.0
Merged-chr3-88627733-4	chr3	88627237	88628237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 1 of 21)	intron (NM_001198913, intron 1 of 21)	6343.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12205605-2	chr15	12205105	12206105	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356498, intron 1 of 15)	CpG	577.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-128615109-4	chr1	128614602	128615602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22803.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	34.5	49.0	38.5	34.5	82.0	41.0
Merged-chr7-12478312-4	chr7	12477832	12478832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039951)	promoter-TSS (NM_001039951)	27.0	NM_026112	67370.0	Mm.98929	NM_026112	ENSMUSG00000030386	Zfp606	2410022M24Rik|AW494727	zinc finger protein 606	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83720607-2	chr8	83720107	83721107	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_197982, exon 4 of 11)	exon (NM_197982, exon 4 of 11)	3377.0	NR_106188	102465897.0		NR_106188	ENSMUSG00000098465	Mir1668	Gm27590|mmu-mir-1668	microRNA 1668	ncRNA	0.0	8.0	4.5	0.0	3.5	2.5
Merged-chr16-13754564-4	chr16	13754042	13755042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357954)	promoter-TSS (NM_001357954)	-22.0	NM_001357954	432999.0	Mm.60430	NM_001357954		A930007A09Rik	-	RIKEN cDNA A930007A09 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-58942994-4	chr19	58942491	58943491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178689)	promoter-TSS (NM_178689)	-434.0	NM_178689	226265.0	Mm.103154	NM_178689	ENSMUSG00000048029	Eno4	6430537H07Rik	enolase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78465063-4	chr10	78464588	78465588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172134)	promoter-TSS (NM_172134)	-140.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84727666-1	chr2	84727166	84728166	+	1000.0	f1_balb.idr	promoter-TSS (NM_133840)	promoter-TSS (NM_133840)	-398.0	NM_133840	98985.0	Mm.21583	NM_133840	ENSMUSG00000027079	Clp1	AI462438|Heab	CLP1, cleavage and polyadenylation factor I subunit	protein-coding	81.0	200.0	162.0	105.0	338.5	247.0
Merged-chr1-165461099-4	chr1	165460621	165461621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027430)	promoter-TSS (NM_027430)	-87.0	NM_027430	70456.0	Mm.195625	NM_027430	ENSMUSG00000026568	Mpc2	0610006C01Rik|2010002I07Rik|2610205H19Rik|AA108335|Brp44|ESTM43	mitochondrial pyruvate carrier 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24447785-4	chr5	24447277	24448277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022418)	promoter-TSS (NM_022418)	69.0	NM_022418	64295.0	Mm.150098	NM_022418	ENSMUSG00000028958	Tmub1	2010004O20Rik|AB030183|Hops	transmembrane and ubiquitin-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110427361-4	chr11	110426864	110427864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	28262.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108065786-2	chr6	108065286	108066286	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178391, intron 1 of 1)	intron (NM_178391, intron 1 of 1)	741.0	NM_178391	74729.0	Mm.56539	NM_178391	ENSMUSG00000034639	Setmar	5830404F24Rik|Etet2	SET domain without mariner transposase fusion	protein-coding	12.5	30.0	34.5	16.0	40.5	47.0
Merged-chr15-95802953-4	chr15	95802440	95803440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	12097.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-14681909-1	chr18	14681409	14682409	+	1000.0	f1_c57bl6.idr	intron (NM_009280, intron 1 of 10)	intron (NM_009280, intron 1 of 10)	1005.0	NM_001161369	268996.0	Mm.31761	NM_009280	ENSMUSG00000037013	Ss18	D130059H17|Ssxt|Syt	SS18, nBAF chromatin remodeling complex subunit	protein-coding	2.5	9.5	20.5	2.0	2.0	10.0
Merged-chr16-4879317-4	chr16	4878810	4879810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145359, intron 1 of 2)	CpG	541.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26475208-4	chr2	26474719	26475719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 15 of 33)	intron (NM_008714, intron 15 of 33)	-5100.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32311230-4	chr19	32310719	32311719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 2 of 9)	intron (NM_144792, intron 2 of 9)	38097.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70655955-6	chr11	70655457	70656457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-2177	-1219.0	NM_001136062	13808.0	Mm.251322	NM_007933	ENSMUSG00000060600	Eno3	Eno-3|MSE	enolase 3, beta muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-53248200-4	chr9	53247709	53248709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029936)	promoter-TSS (NM_029936)	-97.0	NM_029936	77591.0	Mm.133560	NM_029936	ENSMUSG00000053289	Ddx10	4632415A01Rik|AI646054	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding	3.0	5.5	5.0	2.0	11.5	2.0
Merged-chr10-20312423-4	chr10	20311934	20312934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153787)	promoter-TSS (NM_153787)	-35.0	NM_001025392	72567.0	Mm.294783	NM_153787	ENSMUSG00000037608	Bclaf1	2610102K23Rik|2700025J07Rik|2810454G14Rik|5730534O06Rik|AI450190|AW556225|Btf|mKIAA0164	BCL2-associated transcription factor 1	protein-coding	73.0	207.5	146.0	80.5	197.5	151.0
Merged-chr11-97435271-4	chr11	97434752	97435752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14908.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40854820-2	chr4	40854320	40855320	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022305)	promoter-TSS (NM_022305)	-283.0	NM_022305	14595.0	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127596901-4	chr10	127596399	127597399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	24249.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89632494-4	chr6	89631988	89632988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11500.0	NM_001178060	232223.0	Mm.229332	NM_153162	ENSMUSG00000000811	Txnrd3	AI196535|TGR|TR2	thioredoxin reductase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47915506-2	chr19	47915011	47916011	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001738, intron 1 of 1)	intron (NM_001001738, intron 1 of 1)	3788.0	NM_001001738	414801.0	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	6.0	2.5	2.0	2.0	0.0	0.5
Merged-chr4-63409493-4	chr4	63408990	63409990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6045.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-61579581-4	chr2	61579080	61580080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011529, intron 1 of 7)	intron (NM_011529, intron 1 of 7)	994.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34030766-2	chr17	34030272	34031272	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077709, intron 2 of 7)	intron (NM_001077709, intron 2 of 7)	918.0	NM_001077709	14977.0	Mm.18556	NM_008202	ENSMUSG00000024327	Slc39a7	AA408174|AI117660|AL024048|H-2Ke4|H2-Ke4|Ke-4|Ke4|Ring5|Zip7	solute carrier family 39 (zinc transporter), member 7	protein-coding	12.0	14.5	22.0	0.5	27.0	19.0
Merged-chr2-172345457-4	chr2	172344955	172345955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025912)	promoter-TSS (NM_025912)	-122.0	NM_025912	67017.0	Mm.30013	NM_025912	ENSMUSG00000027495	Fam210b	2010011I20Rik|AI430961|AV108736	family with sequence similarity 210, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-118360572-3	chr4	118360097	118361097	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026601, intron 3 of 8)	intron (NM_026601, intron 3 of 8)	598.0	NR_003946	68180.0	Mm.193212	NM_026601	ENSMUSG00000006395	Hyi	2700033B16Rik|6430559E15Rik|HT036	hydroxypyruvate isomerase (putative)	protein-coding	30.0	95.0	43.5	140.5	254.0	260.5
Merged-chr2-76673126-4	chr2	76672635	76673635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010222)	promoter-TSS (NM_010222)	-37.0	NM_001355080	14231.0	Mm.24720	NM_010222	ENSMUSG00000002732	Fkbp7	23kDa|FKBP-7|FKBP23	FK506 binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-5014792-4	chr7	5014298	5015298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025324)	promoter-TSS (NM_025324)	-70.0	NM_001110328	23877.0	Mm.38911	NM_011813	ENSMUSG00000061374	Fiz1	AI790204|mFLJ00416	Flt3 interacting zinc finger protein 1	protein-coding	13.5	27.0	17.5	7.5	23.0	15.0
Merged-chr5-30873938-2	chr5	30873438	30874438	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144525, intron 9 of 16)	intron (NM_144525, intron 9 of 16)	4359.0	NM_144525	68796.0	Mm.205169	NM_144525	ENSMUSG00000038828	Tmem214	1110039B18Rik|4921530J21Rik|AI841294|AU018742|C76280	transmembrane protein 214	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78246194-4	chr11	78245681	78246681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009297)	promoter-TSS (NM_009297)	430.0	NM_001359106	20316.0	Mm.20755	NM_009143	ENSMUSG00000002064	Sdf2	AI853825	stromal cell derived factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-8671702-4	chr16	8671198	8672198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025821, intron 1 of 3)	CpG	455.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-32397007-4	chr3	32396529	32397529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-31364.0	NM_009517	22401.0	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59468796-2	chr4	59468296	59469296	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30163.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44069778-4	chr19	44069260	44070260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164359)	promoter-TSS (NM_001164359)	15.0	NM_001164359	226144.0	Mm.279865	NM_145502	ENSMUSG00000025198	Erlin1	2810439N09Rik|C80197|Keo4|Spfh1	ER lipid raft associated 1	protein-coding	75.0	100.0	134.0	64.5	109.0	132.5
Merged-chr16-38712898-4	chr16	38712380	38713380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_020260, exon 1 of 12)	5' UTR (NM_020260, exon 1 of 12)	155.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34653673-2	chr17	34653171	34654171	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_017406, intron 15 of 17)	intron (NM_017406, intron 15 of 17)	6525.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	0.0	2.5	0.0	0.0	2.0	0.0
Merged-chr17-36020158-2	chr17	36019658	36020658	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008207, intron 1 of 5)	B3|SINE|B2	402.0	NM_008207	15042.0	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-174674180-4	chr2	174673681	174674681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099328, intron 3 of 4)	intron (NM_001099328, intron 3 of 4)	30647.0	NM_001099328	100043757.0	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	-	zinc finger protein 831	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76287862-4	chr15	76287343	76288343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028852, intron 4 of 4)	intron (NM_028852, intron 4 of 4)	3125.0	NR_037240	100526548.0		NR_037240	ENSMUSG00000093169	Mir3079	mmu-mir-3079	microRNA 3079	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-10321341-4	chr10	10320831	10321831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150983.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	15.0	15.5	17.0	5.5	5.5	9.0
Merged-chr18-9450175-4	chr18	9449683	9450683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026484)	promoter-TSS (NM_026484)	-29.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	19.5	62.0	41.0	22.0	34.5	39.0
Merged-chr10-128705078-4	chr10	128704571	128705571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016756)	promoter-TSS (NM_016756)	-20.0	NM_016756	12566.0	Mm.111326	NM_016756	ENSMUSG00000025358	Cdk2	A630093N05Rik	cyclin-dependent kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57073601-4	chr9	57073103	57074103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110351, intron 1 of 21)	intron (NM_001110351, intron 1 of 21)	1563.0	NM_001110351	20466.0	Mm.15755	NM_011378	ENSMUSG00000042557	Sin3a	AW553200|Sin3|mKIAA4126|mSin3A	transcriptional regulator, SIN3A (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-18235185-4	chr10	18234666	18235666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144820)	promoter-TSS (NM_144820)	-185.0	NM_144820	215814.0	Mm.296565	NM_144820	ENSMUSG00000059554	Ccdc28a	1700009P13Rik|AI480677	coiled-coil domain containing 28A	protein-coding	56.0	106.0	118.0	40.5	117.5	102.0
Merged-chr2-52072801-4	chr2	52072311	52073311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175238)	promoter-TSS (NM_175238)	-26.0	NM_001355415	51869.0	Mm.254530	NM_175238	ENSMUSG00000036202	Rif1	5730435J01Rik|6530403D07Rik|AU016181|AW549474|D2Ertd145e	replication timing regulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9783906-4	chr13	9783406	9784406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18585.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96163495-4	chr10	96162990	96163990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62717.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-162207413-4	chr1	162206939	162207939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038619, intron 14 of 20)	intron (NM_001038619, intron 14 of 20)	-10184.0	NR_002870	474332.0	Mm.479755	NR_002870	ENSMUSG00000078190	Dnm3os	6030416H16Rik|Hag2|Npn1|P/L01	dynamin 3, opposite strand	ncRNA	13.5	23.0	35.5	12.0	10.5	19.0
Merged-chr10-39261339-4	chr10	39260846	39261846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97552.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141723467-4	chr4	141722979	141723979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001017966)	promoter-TSS (NM_001017966)	-60.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	45.0	116.0	94.5	38.0	132.5	71.0
Merged-chr8-13674475-4	chr8	13673977	13674977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	3110.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111876787-4	chr8	111876246	111877246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025781)	promoter-TSS (NM_025781)	-71.0	NM_025781	66817.0	Mm.345350	NM_025781	ENSMUSG00000031953	Tmem170	9030409E16Rik|AA403674|D8Bwg1414e|Tmem170a	transmembrane protein 170	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-63052996-4	chr11	63052484	63053484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8675.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17634256-4	chr17	17633749	17634749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9760.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	23.0	39.0	22.0	14.5	36.0	16.0
Merged-chr13-56279618-2	chr13	56279118	56280118	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16933.0	NM_019568	57266.0	Mm.30211	NM_019568	ENSMUSG00000021508	Cxcl14	1110031L23Rik|1200006I23Rik|AI414372|BMAC|BRAK|KS1|Kec|MIP-2g|MIP2gamma|NJAC|Scyb14|bolekine	chemokine (C-X-C motif) ligand 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87535814-4	chr6	87535329	87536329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2570.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	19.5	110.0	40.0	46.0	69.0	61.0
Merged-chr4-133468252-4	chr4	133467753	133468753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-11880.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	22.0	71.5	39.0	129.5	246.5	158.0
Merged-chr13-38528408-4	chr13	38527925	38528925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145367)	promoter-TSS (NM_145367)	59.0	NM_145367	105245.0	Mm.28622	NM_145367	ENSMUSG00000038991	Txndc5	AL022641|ERp46|PC-TRP	thioredoxin domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54795741-4	chr12	54795256	54796256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026998)	promoter-TSS (NM_026998)	-94.0	NM_026998	72183.0	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	32.5	70.5	41.0	5.5	54.5	24.5
Merged-chr1-171827867-4	chr1	171827362	171828362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-11835.0	NM_001252472	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125613853-4	chr7	125613365	125614365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021887, intron 1 of 8)	L1MA9|LINE|L1	10436.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	52.5	67.0	41.5	28.5	87.5	63.5
Merged-chr1-180822480-4	chr1	180821960	180822960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8855.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6401607-4	chr19	6401120	6402120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011242, intron 1 of 16)	CpG	1037.0	NM_011242	19395.0	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170131220-4	chr2	170130762	170131762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033299)	promoter-TSS (NM_001033299)	-42.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	5.5	44.0	13.0	8.0	26.5	27.0
Merged-chr11-77983325-2	chr11	77982825	77983825	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_174852, exon 1 of 15)	exon (NM_174852, exon 1 of 15)	509.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116616974-4	chr11	116616476	116617476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	7276.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90504206-4	chr2	90503695	90504695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-25021.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90370448-4	chr7	90369976	90370976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040085, intron 4 of 18)	intron (NM_001040085, intron 4 of 18)	-16505.0	NM_001040087	83671.0	Mm.26751	NM_031394	ENSMUSG00000030616	Sytl2	AI266830|Slp2|mKIAA1597	synaptotagmin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134747717-4	chr1	134747214	134748214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009307, exon 10 of 10)	3' UTR (NM_009307, exon 10 of 10)	38414.0	NM_001355726	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44069391-4	chr19	44068886	44069886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001164359, exon 2 of 12)	5' UTR (NM_001164359, exon 2 of 12)	300.0	NM_145502	226144.0	Mm.279865	NM_145502	ENSMUSG00000025198	Erlin1	2810439N09Rik|C80197|Keo4|Spfh1	ER lipid raft associated 1	protein-coding	69.0	109.5	127.0	68.0	109.0	121.0
Merged-chr7-19698241-4	chr7	19697727	19698727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009696, exon 2 of 4)	exon (NM_009696, exon 2 of 4)	171.0	NM_001305819	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-63999844-4	chr7	63999330	64000330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60915.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-140811203-4	chr6	140810716	140811716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	184331.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60763091-4	chr18	60762612	60763612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-11484.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	8.5	16.5	10.5	19.5	13.0	13.0
Merged-chr2-52859238-4	chr2	52858737	52859737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	1369.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127008702-4	chr2	127008189	127009189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175550)	promoter-TSS (NM_175550)	-22.0	NM_175550	108011.0	Mm.134045	NM_175550	ENSMUSG00000001998	Ap4e1	2310033A20Rik|9930028M04Rik|AV087807	adaptor-related protein complex AP-4, epsilon 1	protein-coding	5.0	24.0	17.5	17.5	16.5	4.0
Merged-chr12-99900329-2	chr12	99899829	99900829	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028354, intron 5 of 15)	URR1B|DNA|hAT-Charlie	15814.0	NM_028354	104884.0	Mm.312323	NM_028354	ENSMUSG00000021177	Tdp1	2810481F14Rik|4921509N21Rik|AI838772|AW493413|E430034L06Rik|MLZ-501|SCAN1	tyrosyl-DNA phosphodiesterase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118768783-1	chr9	118768283	118769283	+	1000.0	f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	57091.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	8.0	0.0	0.0	3.0	0.0	0.0
Merged-chr1-37472481-4	chr1	37471973	37472973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 5 of 15)	L1M3b|LINE|L1	16132.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57285170-4	chr17	57284661	57285661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 1 of 25)	intron (NM_001163816, intron 1 of 25)	6061.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	24.5	67.5	33.0	35.0	64.0	47.0
Merged-chr5-76522176-4	chr5	76521657	76522657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7150.0	NM_001359372	69940.0	Mm.403233	NM_027270	ENSMUSG00000036435	Exoc1	2810407P21Rik|A730011E05Rik|SEC3|Sec3l1|Sec3p	exocyst complex component 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60881796-2	chr2	60881296	60882296	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001141931)	promoter-TSS (NM_001141931)	-358.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72835336-1	chr6	72834836	72835836	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-46291.0	NM_009332	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	5.5	0.0	2.0	4.0	6.0	7.5
Merged-chr7-44374468-4	chr7	44373957	44374957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027049, exon 2 of 6)	5' UTR (NM_027049, exon 2 of 6)	573.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90783241-2	chr2	90782741	90783741	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356533)	promoter-TSS (NM_001356533)	3.0	NM_001356533	271813.0	Mm.61146	NM_178755	ENSMUSG00000040812	Agbl2	4930524K04|A430081C19Rik|CCP2	ATP/GTP binding protein-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21974324-4	chr13	21973827	21974827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6854.0	NM_001162928	195236.0	Mm.204664	NM_001162928	ENSMUSG00000016982	Pom121l2	Gm24	POM121 membrane glycoprotein-like 2 (rat)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5837696-4	chr19	5837194	5838194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131212, exon 1 of 1)	non-coding (NR_131212, exon 1 of 1)	7784.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100416300-4	chr5	100415784	100416784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026969)	promoter-TSS (NM_026969)	-50.0	NM_001359332	69162.0	Mm.18634	NM_026969	ENSMUSG00000035325	Sec31a	1810024J13Rik|ABP125|ABP130|AU042160|HSPC275|Sec31l1	Sec31 homolog A (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-46251755-4	chr2	46251252	46252252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur1|LINE|L1	555147.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89429955-4	chr15	89429454	89430454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_004843)	promoter-TSS (NR_004843)	-27.0	NR_037153	12651.0	Mm.485045	NM_007692	ENSMUSG00000022617	Chkb	Chetk|Chkl|Ck|Ck/Ek|Ck/Ek-beta|Ckb|Ckekb|Ek	choline kinase beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-107594576-4	chr7	107594066	107595066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008905)	promoter-TSS (NM_008905)	-485.0	NM_008905	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97373973-4	chr15	97373468	97374468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172293, exon 5 of 6)	5' UTR (NM_172293, exon 5 of 6)	-126681.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127790529-4	chr3	127790042	127791042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356430)	promoter-TSS (NM_001356430)	-115.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	167.5	520.5	356.5	103.0	228.5	165.0
Merged-chr5-86071769-4	chr5	86071265	86072265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019992)	promoter-TSS (NM_019992)	19.0	NM_001310639	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	2.0	0.0	1.5	0.0	0.0	0.0
Merged-chr5-99381161-4	chr5	99380657	99381657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	RMER1B|Other|Other	-128230.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101385501-4	chr7	101385003	101386003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027180)	promoter-TSS (NM_027180)	-23.0	NM_027180	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-85871852-4	chr10	85871349	85872349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133993)	promoter-TSS (NM_133993)	18.0	NM_133993	103136.0	Mm.18834	NM_133993	ENSMUSG00000001785	Pwp1	2310058A11Rik|2610205J09Rik|AI098170|AL022879|AV083409|AW550690	PWP1 homolog, endonuclein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-14361576-4	chr16	14361055	14362055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008576)	promoter-TSS (NM_008576)	-3.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	55.0	135.5	127.0	33.5	83.0	65.5
Merged-chr5-129002791-4	chr5	129002298	129003298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152615, intron 1 of 11)	intron (NR_152615, intron 1 of 11)	5774.0	NR_152615	13852.0	Mm.260716	NM_007941	ENSMUSG00000029428	Stx2	AW538950|Epim|G1-536-1|Syn-2|repro34	syntaxin 2	protein-coding	66.0	87.0	124.5	42.5	123.0	112.0
Merged-chr1-107481618-4	chr1	107481121	107482121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29802.0	NM_001174170	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	0.0	4.0	1.0	0.0	0.0	0.0
Merged-chr5-134184511-4	chr5	134184005	134185005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359852, intron 1 of 14)	CpG	467.0	NM_053266	114674.0	Mm.218744	NM_053266	ENSMUSG00000015942	Gtf2ird2	1700012P16Rik	GTF2I repeat domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51263537-3	chr11	51263068	51264068	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358279)	promoter-TSS (NM_001358279)	94.0	NM_001358281	193286.0	Mm.80975	NM_177567	ENSMUSG00000045942	BC049762	4930503F14	cDNA sequence BC049762	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155417474-4	chr1	155416957	155417957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011273)	promoter-TSS (NM_011273)	-13.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-26373116-4	chr10	26372596	26373596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172787, intron 1 of 21)	intron (NM_172787, intron 1 of 21)	976.0	NM_001359255	237339.0	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	L3MBTL3 histone methyl-lysine binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-159495391-4	chr3	159494898	159495898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029523)	promoter-TSS (NM_029523)	-35.0	NM_029523	76131.0	Mm.371655	NM_029523	ENSMUSG00000028175	Depdc1a	5830484J08Rik|Depdc1	DEP domain containing 1a	protein-coding	4.0	7.0	3.0	0.0	3.0	3.0
Merged-chr15-79883471-4	chr15	79882956	79883956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-8952.0	NM_001160415	80287.0	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Gm20117|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	26.5	35.0	24.0	21.5	21.0	30.5
Merged-chr9-100876150-4	chr9	100875661	100876661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009282, intron 14 of 33)	intron (NM_009282, intron 14 of 33)	158723.0	NM_001311149	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	13.0	12.5	7.5	30.5	5.5	11.0
Merged-chr3-88745159-4	chr3	88744673	88745673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018804, exon 4 of 4)	3' UTR (NM_018804, exon 4 of 4)	27426.0	NM_018804	229521.0	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	17.5	49.5	25.0	26.0	67.0	39.5
Merged-chr7-17023092-2	chr7	17022592	17023592	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011155, intron 1 of 12)	intron (NM_011155, intron 1 of 12)	4822.0	NM_011155	19060.0	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	1.5	0.0	5.5	0.0	1.0	2.5
Merged-chr8-128491886-4	chr8	128491394	128492394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358959, intron 12 of 16)	intron (NM_001358959, intron 12 of 16)	132653.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	13.0	43.0	40.5	13.0	42.0	40.0
Merged-chr10-26375969-4	chr10	26375462	26376462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172787)	promoter-TSS (NM_172787)	-743.0	NM_172787	237339.0	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	L3MBTL3 histone methyl-lysine binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-5160342-2	chr12	5159842	5160842	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164493, intron 3 of 13)	intron (NM_001164493, intron 3 of 13)	215340.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29848962-4	chr6	29848421	29849421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	RSINE1|SINE|B4	-4820.0	NM_001347084	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181601263-4	chr2	181600767	181601767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133701)	promoter-TSS (NM_133701)	-52.0	NM_133701	68879.0	Mm.292001	NM_133701	ENSMUSG00000002455	Prpf6	1190003A07Rik|2610031L17Rik|ANT-1|U5-102K	pre-mRNA splicing factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120509024-4	chr5	120508519	120509519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2173.0	NM_001177595	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121721985-4	chr5	121721472	121722472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009125, intron 1 of 24)	Tigger15a|DNA|TcMar-Tigger	10363.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	6.5	36.5	32.5	13.0	60.5	8.5
Merged-chr2-44926437-1	chr2	44925937	44926937	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-64815.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35174656-4	chr17	35174153	35175153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019467, intron 1 of 7)	MER21C|LTR|ERVL	1399.0	NM_019467	11629.0	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64360787-2	chr7	64360287	64361287	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177893, intron 8 of 13)	intron (NM_177893, intron 8 of 13)	13308.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111046393-4	chr9	111045892	111046892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	10852.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126429062-4	chr7	126428544	126429544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_030566, exon 1 of 13)	5' UTR (NM_030566, exon 1 of 13)	277.0	NM_030566	70314.0	Mm.35467	NM_030566	ENSMUSG00000030727	Rabep2	2610011A08Rik|AI462746|Fra	rabaptin, RAB GTPase binding effector protein 2	protein-coding	12.5	23.0	30.5	4.5	9.5	33.5
Merged-chr13-44957263-2	chr13	44956763	44957763	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025772, intron 6 of 9)	intron (NM_025772, intron 6 of 9)	44833.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71628020-4	chr8	71627518	71628518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001029873, exon 42 of 42)	3' UTR (NM_001029873, exon 42 of 42)	3088.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	14.0	62.0	69.0	32.0	62.5	56.5
Merged-chr9-72660334-4	chr9	72659834	72660834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1997.0	NM_010890	17999.0	Mm.279923	NM_010890	ENSMUSG00000032216	Nedd4	AA959633|AL023035|AU019897|E430025J12Rik|EG639396|Gm7265|KIAA0093|Nedd4-1|Nedd4a	neural precursor cell expressed, developmentally down-regulated 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79306558-2	chr11	79306058	79307058	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-33334.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84785374-4	chr18	84784883	84785883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	41316.0	NR_155706	102641800.0		NR_155706		Gm38576	-	predicted gene, 38576	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127478434-3	chr7	127477923	127478923	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6798.0	NM_010183	14123.0	Mm.323505	NM_010183	ENSMUSG00000042423	Fbrs	Fbs|Fbs1	fibrosin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74489497-4	chr17	74489014	74490014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026417)	promoter-TSS (NM_026417)	21.0	NM_026417	67864.0	Mm.41891	NM_026417	ENSMUSG00000024072	Yipf4	2310034L04Rik	Yip1 domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23415103-2	chr16	23414603	23415603	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14030.0	NM_001004151	239766.0	Mm.208751	NM_001004151	ENSMUSG00000033383	Rtp1	Gm1766|Gm604	receptor transporter protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80261072-4	chr10	80260558	80261558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347119)	promoter-TSS (NM_001347119)	-46.0	NM_010255	14431.0	Mm.7329	NM_010255	ENSMUSG00000020150	Gamt	AA571402|Spintz1	guanidinoacetate methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54696519-4	chr12	54696049	54697049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331162)	promoter-TSS (NM_001331162)	-655.0	NM_025456	66266.0	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding	172.0	387.5	227.0	157.0	277.0	212.0
Merged-chr5-137628914-4	chr5	137628421	137629421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168652)	promoter-TSS (NM_001168652)	-202.0	NM_001168652	231798.0	Mm.200763	NM_146164	ENSMUSG00000093445	Lrch4	2810008P14Rik|2900069C24Rik|AI558103|LRN|LRRN4|SAP25|mFLJ00248	leucine-rich repeats and calponin homology (CH) domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53764662-2	chr11	53764162	53765162	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1008.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120643801-4	chr11	120643313	120644313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348222)	promoter-TSS (NM_001348222)	-44.0	NM_001348222	209027.0	Mm.127731	NM_144795	ENSMUSG00000025140	Pycr1	P5CR 1|P5CR1	pyrroline-5-carboxylate reductase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79191893-4	chr12	79191391	79192391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362269)	promoter-TSS (NM_001362269)	-36.0	NM_021557	17252.0	Mm.291799	NM_021557	ENSMUSG00000066441	Rdh11	2610319N22Rik|AI428145|AU045252|Arsdr1|C85936|CGI-82|HCBP12|M42C60|Mdt1|Psdr1|SCALD|UBE-1c1|Ube-1c|ralR1	retinol dehydrogenase 11	protein-coding	0.0	24.0	8.0	0.0	27.0	7.5
Merged-chr19-10803937-4	chr19	10803437	10804437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009852, intron 1 of 12)	intron (NM_009852, intron 1 of 12)	26121.0	NM_001037801	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55386952-4	chr4	55386443	55387443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009011, intron 9 of 9)	RMER10B|LTR|ERVL	31899.0	NR_040674	100415914.0	Mm.261765	NR_040674	ENSMUSG00000087070	Gm12505	-	predicted gene 12505	ncRNA	17.0	24.5	17.5	4.0	13.5	14.5
Merged-chr16-3723184-2	chr16	3722684	3723684	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5060.0	NM_001161791	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-67037450-4	chr6	67036952	67037952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007836)	promoter-TSS (NM_007836)	-45.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84004032-4	chr12	84003530	84004530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-5472.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3664307-4	chr2	3663790	3664790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49168.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44887134-4	chr7	44886639	44887639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331206, intron 3 of 16)	intron (NM_001331206, intron 3 of 16)	5285.0	NM_001331208	75613.0	Mm.157778	NM_029365	ENSMUSG00000002968	Med25	2610034E13Rik|2610529E18Rik|ESTM2	mediator complex subunit 25	protein-coding	17.5	10.5	22.5	2.0	35.0	12.5
Merged-chr11-94322037-4	chr11	94321547	94322547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155068)	promoter-TSS (NR_155068)	-84.0	NM_001361573	67684.0	Mm.30927	NM_026313	ENSMUSG00000020863	Luc7l3	3300001P08Rik|Luc7a	LUC7-like 3 (S. cerevisiae)	protein-coding	13.0	10.0	19.0	9.0	17.5	14.0
Merged-chr8-16427614-4	chr8	16427112	16428112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053171, intron 7 of 69)	ORR1E|LTR|ERVL-MaLR	-258774.0	NR_037214	100526464.0		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA	1.5	2.0	8.5	1.0	2.0	6.5
Merged-chr6-88106210-4	chr6	88105722	88106722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133933)	TTS (NM_133933)	-1964.0	NR_105795	102465196.0		NR_105795	ENSMUSG00000099095	Mir6376	Gm27778|mmu-mir-6376	microRNA 6376	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-130428866-4	chr1	130428344	130429344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151525, intron 2 of 3)	intron (NR_151525, intron 2 of 3)	-5801.0	NM_001317361	13137.0	Mm.436759	NM_007827	ENSMUSG00000026401	Cd55b	AI323748|Daf|Daf-TM|Daf2|TM-DAF	CD55 molecule, decay accelerating factor for complement B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109737735-4	chr8	109737190	109738190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080930)	promoter-TSS (NM_001080930)	49.0	NM_001080930	52335.0	Mm.276770	NM_001080930	ENSMUSG00000069895	Atxn1l	AW558552|Boat|C330011L24Rik|D6Mgi37|D8Ertd587e	ataxin 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32566701-1	chr11	32566201	32567201	+	1000.0	f1_balb.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	33435.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0.0	0.0	1.0	0.0	0.0	0.5
Merged-chr18-38372171-4	chr18	38371673	38372673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-33180.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-28171458-4	chr3	28170956	28171956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-91758.0	NM_001163007	665113.0	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-127243724-4	chr4	127243236	127244236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030252)	promoter-TSS (NM_030252)	-48.0	NM_030252	80284.0	Mm.139607	NM_030252	ENSMUSG00000042380	Smim12	BC003266	small integral membrane protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25719044-4	chr7	25718529	25719529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028771)	promoter-TSS (NM_028771)	24.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119605208-4	chr8	119604706	119605706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021441)	promoter-TSS (NM_021441)	34.0	NM_021441	21341.0	Mm.41977	NM_021441	ENSMUSG00000031832	Taf1c	Tafi95|mTAFI95	TATA-box binding protein associated factor, RNA polymerase I, C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45455786-3	chr13	45455295	45456295	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-51649.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	13.0	11.0	24.0	13.0	11.0	23.0
Merged-chr2-167760177-4	chr2	167759683	167760683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69006.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-125114857-4	chr4	125114345	125115345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13036.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	33.0	94.5	38.5	20.0	20.0	23.5
Merged-chr12-110416409-2	chr12	110415909	110416909	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-30770.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37112894-4	chr10	37112387	37113387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26039.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135434257-2	chr4	135433757	135434757	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022980)	promoter-TSS (NM_022980)	-452.0	NM_022980	53902.0	Mm.331970	NM_022980	ENSMUSG00000059713	Rcan3	AU041093|Csp3|Dscr1l2	regulator of calcineurin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69502129-4	chr12	69501624	69502624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26574.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	138.5	325.0	236.5	148.5	364.0	182.0
Merged-chr2-25983442-4	chr2	25982934	25983934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276361)	promoter-TSS (NM_001276361)	-152.0	NM_001276361	227634.0	Mm.36834	NM_001115076	ENSMUSG00000026933	Camsap1	9530003A05Rik|C77823|PRO2405	calmodulin regulated spectrin-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16781037-4	chr19	16780526	16781526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173028)	promoter-TSS (NM_173028)	-93.0	NM_173028	271564.0	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116613961-4	chr3	116613467	116614467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001289571, exon 7 of 16)	exon (NM_001289571, exon 7 of 16)	620.0	NM_030016	229780.0	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	15.0	42.5	21.0	10.0	24.5	20.5
Merged-chr19-12005700-4	chr19	12005217	12006217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31023.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17455360-3	chr12	17454859	17455859	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-89514.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	4.0	2.5	8.0	21.5	13.5	7.5
Merged-chr2-25500722-4	chr2	25500217	25501217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027062)	promoter-TSS (NM_027062)	-33.0	NM_001356407	30839.0	Mm.29170	NM_013908	ENSMUSG00000015095	Fbxw5	AI159739|Fbw5	F-box and WD-40 domain protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-151210558-4	chr5	151210080	151211080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20387.0	NR_153382	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55774999-4	chr19	55774511	55775511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	33201.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	10.5	36.0	19.0	17.5	22.0	15.0
Merged-chr11-97800178-4	chr11	97799650	97800650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010688, intron 1 of 6)	CpG	585.0	NM_010688	16796.0	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	0.0	2.5	0.0	0.0	0.0	0.0
Merged-chr18-62164523-7	chr18	62163982	62164982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER103C|DNA|hAT-Charlie	15499.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103979611-4	chr11	103979121	103980121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007477, intron 3 of 4)	intron (NM_007477, intron 3 of 4)	12750.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94498220-4	chr16	94497740	94498740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007834, exon 8 of 8)	3' UTR (NM_007834, exon 8 of 8)	28389.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136144878-4	chr4	136144360	136145360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008321, intron 2 of 2)	CpG-10505	1038.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	142.0	379.0	317.0	149.0	355.5	312.0
Merged-chr2-57114657-2	chr2	57114157	57115157	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001139509, intron 1 of 7)	CpG	381.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90248081-4	chr3	90247587	90248587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013901)	promoter-TSS (NM_013901)	-105.0	NM_013901	30791.0	Mm.294709	NM_013901	ENSMUSG00000052310	Slc39a1	Zip1|Zirtl	solute carrier family 39 (zinc transporter), member 1	protein-coding	47.5	108.0	81.0	53.5	73.0	86.5
Merged-chr5-112323893-2	chr5	112323385	112324385	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2484.0	NM_018783	54723.0	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	26.5	74.0	55.5	34.5	142.0	93.5
Merged-chr4-136285504-4	chr4	136285003	136286003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009557)	promoter-TSS (NM_009557)	-564.0	NM_009557	22704.0	Mm.1504	NM_009557	ENSMUSG00000051351	Zfp46	AI426962|Mlz-4|Zfp-46|Znf436	zinc finger protein 46	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29940443-4	chr19	29939898	29940898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360725, intron 2 of 8)	intron (NM_001360725, intron 2 of 8)	-5392.0	NM_001164724	77125.0	Mm.182359	NM_133775	ENSMUSG00000024810	Il33	9230117N10Rik|Il-33|Il1f11|NF-HEV	interleukin 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88118686-4	chr8	88118198	88119198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029074)	promoter-TSS (NM_029074)	-61.0	NM_029074	382030.0	Mm.216574	NM_029074	ENSMUSG00000036810	Cnep1r1	5033428A16Rik|NEP1-R1|Tmem188	CTD nuclear envelope phosphatase 1 regulatory subunit 1	protein-coding	21.5	26.0	30.5	24.5	29.5	22.5
Merged-chr11-43433717-4	chr11	43433233	43434233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148673)	promoter-TSS (NM_148673)	2.0	NM_198936	193116.0	Mm.28200	NM_148673	ENSMUSG00000020409	Slu7	AU018913|D11Ertd730e|D3Bwg0878e	SLU7 splicing factor homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-81742716-4	chr4	81742210	81743210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-255697.0	NR_030570	100124446.0		NR_030570	ENSMUSG00000077941	Mir466h	Mirn466h	microRNA 466h	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100750950-4	chr13	100750445	100751445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6286.0	NM_025369	66128.0	Mm.306173	NM_025369	ENSMUSG00000061474	Mrps36	1110018B13Rik|S36mt	mitochondrial ribosomal protein S36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-16244506-3	chr14	16244001	16245001	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359882, intron 1 of 3)	intron (NM_001359882, intron 1 of 3)	-1170.0	NM_001359883	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	137.0	307.0	205.0	66.5	199.5	111.0
Merged-chr6-39222720-4	chr6	39222209	39223209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-15936.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55571120-4	chr13	55570613	55571613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145382)	promoter-TSS (NM_145382)	7.0	NM_145382	212483.0	Mm.35661	NM_145382	ENSMUSG00000021495	Fam193b	IRIZIO|Kiaa1931	family with sequence similarity 193, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134187180-4	chr4	134186682	134187682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144527)	promoter-TSS (NM_144527)	-97.0	NM_144527	70012.0	Mm.26542	NM_144527	ENSMUSG00000037443	Cep85	2410030J07Rik|AI173272|AI173504|Ccdc21	centrosomal protein 85	protein-coding	20.0	17.0	29.0	33.5	67.0	52.0
Merged-chr6-142573042-4	chr6	142572552	142573552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-1438.0	NM_001330366	16523.0	Mm.1482	NM_008428	ENSMUSG00000030247	Kcnj8	AI448900|Kir6.1|gnite|slmbr|sltr|uKATP-1	potassium inwardly-rectifying channel, subfamily J, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-78312281-4	chr18	78311784	78312784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207651, intron 3 of 21)	intron (NM_207651, intron 3 of 21)	-105844.0	NM_001110274	27411.0	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71289917-1	chr17	71289417	71290417	+	1000.0	f1_balb.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	21094.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	8.0	12.5	0.5	4.5	14.0	2.5
Merged-chr1-153414464-4	chr1	153413951	153414951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033736)	promoter-TSS (NR_033736)	-218.0	NR_033736	626058.0	Mm.31556	NM_001177359		E330020D12Rik	EG626058|F430003O07Rik|Gm6648	Riken cDNA E330020D12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22971979-4	chr11	22971486	22972486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011663)	promoter-TSS (NM_011663)	-19.0	NM_011663	22183.0	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167225152-4	chr2	167224634	167225634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008968, intron 3 of 9)	MTC|LTR|ERVL-MaLR	15403.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102451701-4	chr12	102451193	102452193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11880.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	25.0	113.5	59.5	47.0	166.0	84.5
Merged-chr8-82774156-4	chr8	82773661	82774661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145600)	promoter-TSS (NM_145600)	-35.0	NM_145600	30932.0	Mm.269248	NM_145600	ENSMUSG00000031711	Zfp330	BC008086|Noa36|Znf330	zinc finger protein 330	protein-coding	94.5	239.0	180.5	91.5	203.5	186.5
Merged-chr11-101587881-4	chr11	101587396	101588396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359325, intron 4 of 7)	RMER19B|LTR|ERVK	5597.0	NM_001359325	217203.0	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-127022309-4	chr4	127021785	127022785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023603, intron 1 of 9)	CpG	984.0	NM_023603	71514.0	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84761450-4	chr12	84760915	84761915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 2 of 3)	MLTR14|LTR|ERV1	11697.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103945993-4	chr2	103945510	103946510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11985.0	NM_001142337	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98787025-4	chr11	98786530	98787530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8486.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38968149-4	chr6	38967674	38968674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	intron (NM_011539, intron 3 of 12)	49188.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25268140-4	chr7	25267649	25268649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302811, intron 1 of 20)	intron (NM_001302811, intron 1 of 20)	450.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-75435976-4	chr1	75435477	75436477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357171)	promoter-TSS (NM_001357171)	41.0	NM_001357169	69080.0	Mm.23951	NM_133708	ENSMUSG00000033021	Gmppa	1810012N01Rik	GDP-mannose pyrophosphorylase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56719795-2	chr19	56719295	56720295	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-2577.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83533425-4	chr11	83532924	83533924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2906.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-47715536-2	chr8	47715036	47716036	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-1605.0	NM_172407	70925.0	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45965232-5	chr13	45964742	45965742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009124)	promoter-TSS (NM_009124)	-251.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	18.5	25.5	42.5	23.5	56.5	14.5
Merged-chr19-8837484-4	chr19	8836966	8837966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136064)	promoter-TSS (NM_001136064)	-1.0	NM_001136064	14705.0	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52195555-2	chr3	52195055	52196055	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-72782.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157010327-2	chr2	157009827	157010827	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164663)	TTS (NM_001164663)	-3252.0	NM_025853	66934.0	Mm.25410	NM_025853	ENSMUSG00000027635	Dsn1	1700022L09Rik|AW552447	DSN1 homolog, MIS12 kinetochore complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84114119-4	chr17	84113614	84114614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35454.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4123255-4	chr19	4122757	4123757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016666, intron 1 of 6)	L1MB2|LINE|L1	-1682.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-137754591-4	chr6	137754106	137755106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172733)	promoter-TSS (NM_172733)	29.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60273579-4	chr10	60273080	60274080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4048.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22935793-4	chr8	22935275	22936275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081149, exon 17 of 18)	exon (NM_001081149, exon 17 of 18)	-39061.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-43666219-4	chr6	43665706	43666706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311111)	promoter-TSS (NM_001311111)	72.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-7121498-4	chr7	7120993	7121993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172738)	promoter-TSS (NM_172738)	-17.0	NM_172738	232853.0	Mm.23838	NM_172738	ENSMUSG00000062116	Zfp954	5730403M16Rik|8030437F07|AA123315	zinc finger protein 954	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121574611-4	chr9	121574117	121575117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-12403.0	NR_040740	75384.0	Mm.445955	NR_040740	ENSMUSG00000084995	Lyzl4os	4930589B17Rik|4930596M17Rik	lysozyme-like 4, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27883058-4	chr15	27882566	27883566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 9 of 56)	intron (NM_001081302, intron 9 of 56)	142782.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100201904-4	chr13	100201430	100202430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126182, intron 1 of 15)	intron (NM_001126182, intron 1 of 15)	192.0	NM_001126182	17948.0	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35098970-4	chr7	35098485	35099485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20308.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	6.5	20.5	23.0	5.5	29.0	13.0
Merged-chr2-35680514-3	chr2	35680021	35681021	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290637, intron 3 of 16)	intron (NM_001290637, intron 3 of 16)	-11473.0	NM_001001602	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60897522-4	chr13	60897009	60898009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145801)	promoter-TSS (NM_001145801)	-62.0	NM_001145801	13025.0	Mm.30144	NM_007797	ENSMUSG00000074874	Ctla2b	AW545568|Ctla-2b	cytotoxic T lymphocyte-associated protein 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67445564-4	chr7	67445043	67446043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72685.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	22.5	47.0	39.5	29.5	41.5	20.0
Merged-chr19-27430596-2	chr19	27430096	27431096	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131940)	promoter-TSS (NR_131940)	559.0	NR_027987	107372.0	Mm.17942	NM_175354		C030016D13Rik	AW413347	RIKEN cDNA C030016D13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-68300326-4	chr18	68299846	68300846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026440)	promoter-TSS (NM_026440)	-9.0	NM_026440	67897.0	Mm.27544	NM_026440	ENSMUSG00000009535	Rnmt	2610002P10Rik|AI848273|Rg7mt1|mKIAA0398	RNA (guanine-7-) methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28801679-4	chr17	28801185	28802185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081315, intron 1 of 12)	CpG	559.0	NM_001081315	268936.0	Mm.291877	NM_199061	ENSMUSG00000063952	Brpf3	AI413466|AW493400|mKIAA1286	bromodomain and PHD finger containing, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70260462-4	chr9	70259955	70260955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	53105.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30700449-2	chr2	30699949	30700949	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20761.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-89216856-4	chr7	89216352	89217352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 5 of 14)	intron (NM_001360746, intron 5 of 14)	121935.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46874268-4	chr17	46873762	46874762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16359.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-150665710-4	chr5	150665216	150666216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201369)	promoter-TSS (NM_201369)	-104.0	NM_201369	381695.0	Mm.246934	NM_201369	ENSMUSG00000029655	N4bp2l2	2700092H06Rik|Gm38758|zag1	NEDD4 binding protein 2-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78451585-4	chr9	78451070	78452070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026658, intron 3 of 11)	RSINE1|SINE|B4	3360.0	NM_026658	68291.0	Mm.291779	NM_026658	ENSMUSG00000032342	Mto1	2310039H01Rik|5730419A02Rik	mitochondrial tRNA translation optimization 1	protein-coding	4.5	8.0	7.0	1.0	10.5	14.5
Merged-chr17-78200805-4	chr17	78200270	78201270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_015800, exon 1 of 17)	exon (NM_015800, exon 1 of 17)	522.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89913207-4	chr3	89912709	89913709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310676)	promoter-TSS (NM_001310676)	-13.0	NM_010559	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	21.5	78.5	82.5	29.5	68.5	70.0
Merged-chr4-142094509-4	chr4	142094005	142095005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10201.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	22.5	11.0	30.0	14.0	24.5	35.5
Merged-chr8-121117720-2	chr8	121117220	121118220	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013519, exon 1 of 1)	exon (NM_013519, exon 1 of 1)	1549.0	NM_013519	14234.0	Mm.14092	NM_013519	ENSMUSG00000046714	Foxc2	Fkh14|Hfhbf3|MFH-1|Mfh1	forkhead box C2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41596544-3	chr13	41596028	41597028	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9688.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13988414-4	chr10	13987887	13988887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	22008.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71463656-4	chr8	71463144	71464144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022419)	promoter-TSS (NM_022419)	13.0	NM_022419	64296.0	Mm.276383	NM_022419	ENSMUSG00000007950	Abhd8	0910001L24Rik|AB030191	abhydrolase domain containing 8	protein-coding	27.0	59.0	16.0	10.0	28.0	27.0
Merged-chr5-67426378-2	chr5	67425878	67426878	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164806, intron 1 of 4)	intron (NM_001164806, intron 1 of 4)	1421.0	NM_001164806	666938.0	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141394306-4	chr7	141393791	141394791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011528, intron 1 of 7)	L1MC4a|LINE|L1	2131.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67047904-4	chr10	67047401	67048401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	42826.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-108780736-4	chr4	108780244	108781244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347163, intron 1 of 18)	CpG	344.0	NM_001347163	230597.0	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	8.0	16.5	12.5	10.5	19.0	12.5
Merged-chr2-60209836-4	chr2	60209352	60210352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020575)	promoter-TSS (NM_020575)	-84.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-114753000-4	chr9	114752492	114753492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	21789.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-78509330-4	chr8	78508814	78509814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009033)	promoter-TSS (NM_009033)	-14.0	NM_001282109	76775.0	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88950466-2	chr3	88949972	88950972	+	1000.0	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022994)	promoter-TSS (NM_022994)	-190.0	NM_001164533	65111.0	Mm.29028	NM_022994	ENSMUSG00000068921	Dap3	4921514D13Rik|DAP-3|MRP-S29|S29mt	death associated protein 3	protein-coding	12.0	32.5	32.5	12.5	30.5	24.0
Merged-chr7-45458383-7	chr7	45457933	45458933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010240, intron 3 of 3)	intron (NM_010240, intron 3 of 3)	1453.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	51.0	190.0	111.5	62.5	166.0	147.0
Merged-chr19-32220689-2	chr19	32220189	32221189	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	-9676.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145806485-4	chr2	145805967	145806967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	20351.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-13079008-2	chr6	13078508	13079508	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027992, intron 5 of 8)	intron (NM_027992, intron 5 of 8)	9249.0	NM_027992	71900.0	Mm.27742	NM_027992	ENSMUSG00000029571	Tmem106b	2310036D22Rik|5830455K21Rik|6430519M21Rik|AI428776|AI661344	transmembrane protein 106B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94174805-2	chr13	94174305	94175305	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 3 of 3)	intron (NM_172589, intron 3 of 3)	110476.0	NM_029153	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-60870995-4	chr8	60870485	60871485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19408.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156035638-2	chr1	156035132	156036132	+	1000.0	f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_001160019)	promoter-TSS (NM_001160019)	-32.0	NM_172843	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	100.5	268.0	196.5	94.0	262.5	178.0
Merged-chr8-124520732-4	chr8	124520228	124521228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029746)	promoter-TSS (NM_029746)	-39.0	NM_029746	76332.0	Mm.240108	NM_029746	ENSMUSG00000031979	Cog2	1190002B08Rik|2700012E02Rik|C86089|Ldlc	component of oligomeric golgi complex 2	protein-coding	30.0	42.0	49.5	42.0	92.5	74.0
Merged-chr11-76763626-4	chr11	76763127	76764127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016810)	promoter-TSS (NM_016810)	-49.0	NM_001356321	53334.0	Mm.20931	NM_016810	ENSMUSG00000010392	Gosr1	AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28	golgi SNAP receptor complex member 1	protein-coding	9.5	109.0	49.0	36.5	87.0	65.5
Merged-chr1-46849950-4	chr1	46849447	46850447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356416, intron 1 of 10)	intron (NM_001356416, intron 1 of 10)	3671.0	NM_001356416	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8941886-4	chr19	8941389	8942389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011842)	promoter-TSS (NM_011842)	-31.0	NM_011842	23942.0	Mm.25339	NM_011842	ENSMUSG00000071646	Mta2	AW550797|Mata1l1|Mta1l1|mmta2	metastasis-associated gene family, member 2	protein-coding	46.5	197.5	102.0	43.0	158.5	126.5
Merged-chr10-81605192-4	chr10	81604705	81605705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1103.0	NR_030677	268319.0	Mm.131825	NM_001033363	ENSMUSG00000074862	BC025920	-	zinc finger protein pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-53007651-4	chr9	53007137	53008137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44B|LTR|ERVK	240475.0	NM_029936	77591.0	Mm.133560	NM_029936	ENSMUSG00000053289	Ddx10	4632415A01Rik|AI646054	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84192778-4	chr8	84192272	84193272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-13811.0	NR_029821	723819.0		NR_029821	ENSMUSG00000065483	Mir181c	Mirn181c|mir-181c	microRNA 181c	ncRNA	46.5	91.5	103.0	42.5	105.0	46.0
Merged-chr14-22019606-7	chr14	22019113	22020113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028275)	promoter-TSS (NM_028275)	-99.0	NM_028275	76633.0	Mm.489898	NM_028275	ENSMUSG00000063458	Lrmda	1700112E06Rik|2700009F18Rik	leucine rich melanocyte differentiation associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5843830-5	chr19	5843321	5844321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_003513, exon 1 of 1)	non-coding (NR_003513, exon 1 of 1)	1657.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-65112975-4	chr14	65112501	65113501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-14895.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	4.5	7.5	5.5	0.5	5.5	1.0
Merged-chr10-70197854-4	chr10	70197353	70198353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6811.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4499497-4	chr2	4498999	4499999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 5 of 23)	intron (NM_001177843, intron 5 of 23)	-60255.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81559533-6	chr10	81559052	81560052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_074087, exon 1 of 7)	non-coding (NR_074087, exon 1 of 7)	108.0	NM_001276288	14797.0	Mm.180013	NM_010347	ENSMUSG00000054452	Aes	AL024115|Esp1|Grg|Grg-5|Grg5|Tle5	amino-terminal enhancer of split	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-48842443-4	chr13	48841947	48842947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011078, intron 1 of 21)	ORR1F|LTR|ERVL-MaLR	28438.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-52305106-4	chr14	52304630	52305630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019721)	promoter-TSS (NM_019721)	-6.0	NM_019721	56335.0	Mm.271759	NM_019721	ENSMUSG00000022160	Mettl3	2310024F18Rik|M6A|Spo8	methyltransferase like 3	protein-coding	29.5	80.5	59.0	31.5	65.5	50.5
Merged-chr2-174614131-4	chr2	174613634	174614634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29400.0	NM_001099328	100043757.0	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	-	zinc finger protein 831	protein-coding	0.0	0.5	0.5	2.5	1.0	7.0
Merged-chr9-70657877-2	chr9	70657377	70658377	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172772)	promoter-TSS (NM_172772)	-703.0	NM_172772	235461.0	Mm.170855	NM_172772	ENSMUSG00000042444	Mindy2	AI465301|B230380D07Rik|Fam63b|mKIAA1164	MINDY lysine 48 deubiquitinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-57429415-4	chr8	57428915	57429915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26508.0	NM_009136	20284.0	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	1.0	4.5	6.5	0.0	4.5	8.5
Merged-chr4-134098824-4	chr4	134098317	134099317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3744.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	74.0	362.0	204.0	140.0	212.5	193.0
Merged-chr3-100409441-4	chr3	100408972	100409972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16933.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	6.0	4.5	3.5	6.0	4.5	3.5
Merged-chr4-141994190-4	chr4	141993656	141994656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 2 of 31)	GA-rich|Low_complexity|Low_complexity	11164.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9833641-4	chr3	9833159	9834159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195031)	promoter-TSS (NM_001195031)	20.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	23.5	52.5	46.5	27.0	53.0	45.5
Merged-chr15-36794215-3	chr15	36793747	36794747	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011740, exon 1 of 7)	5' UTR (NM_011740, exon 1 of 7)	291.0	NM_011740	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29431159-4	chr19	29430641	29431641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 2 of 5)	intron (NM_021396, intron 2 of 5)	20222.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-133553459-2	chr2	133552959	133553959	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007553, intron 1 of 2)	CpG	1300.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-91121900-2	chr10	91121400	91122400	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133668, intron 3 of 7)	intron (NM_133668, intron 3 of 7)	2063.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102070023-4	chr5	102069544	102070544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172882)	promoter-TSS (NM_172882)	-123.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77796884-4	chr18	77796384	77797384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152167)	promoter-TSS (NR_152167)	-494.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88101594-2	chr15	88101104	88102104	+	1000.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-213270.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	9.0	0.0	1.0	18.5	30.0	38.0
Merged-chr19-60890209-4	chr19	60889706	60890706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_018869, exon 1 of 16)	5' UTR (NM_018869, exon 1 of 16)	457.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	36.0	111.5	91.0	47.0	114.0	94.5
Merged-chr13-60650145-4	chr13	60649621	60650621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	47910.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	7.0	25.5	18.5	10.0	13.5	16.0
Merged-chr9-123863808-4	chr9	123863322	123864322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1793.0	NM_011798	23832.0	Mm.390241	NM_011798	ENSMUSG00000060509	Xcr1	Ccxcr1|Gpr5|mXcr1	chemokine (C motif) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20159137-4	chr11	20158636	20159636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42276.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-47275015-2	chr11	47274515	47275515	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 2 of 7)	intron (NM_011891, intron 2 of 7)	104287.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-113800306-2	chr9	113799806	113800806	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286603, intron 1 of 4)	L2|LINE|L2	6976.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	15.0	23.0	17.0	10.0	18.5	35.0
Merged-chr19-46562340-2	chr19	46561840	46562840	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355233, intron 1 of 6)	B2_Mm2|SINE|B2	10842.0	NM_001355233	56350.0	Mm.22085	NM_019718	ENSMUSG00000025035	Arl3	-	ADP-ribosylation factor-like 3	protein-coding	0.0	5.0	0.5	3.0	1.5	2.0
Merged-chr3-146658459-4	chr3	146657946	146658946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7129.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83742435-4	chr8	83741930	83742930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1119.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	169.5	440.5	319.0	157.5	367.0	337.0
Merged-chr4-132757224-4	chr4	132756712	132757712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133888)	promoter-TSS (NM_133888)	-41.0	NM_133888	100340.0	Mm.287187	NM_133888	ENSMUSG00000028885	Smpdl3b	1110054A24Rik|AU045240|Asml3b	sphingomyelin phosphodiesterase, acid-like 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39580961-4	chr1	39580487	39581487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-3640.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121259897-4	chr11	121259372	121260372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080932)	promoter-TSS (NM_001080932)	-115.0	NM_001080932	68837.0	Mm.209750	NM_001080932	ENSMUSG00000039275	Foxk2	1110054H05Rik|5730434B08Rik|6230415M23Rik|ILF|Ilf1	forkhead box K2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-53540023-4	chr5	53539504	53540504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15775.0	NM_001080928	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.0	0.0	1.5	2.0	1.0	0.5
Merged-chr3-106496149-4	chr3	106495647	106496647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001093754, intron 8 of 11)	intron (NM_001093754, intron 8 of 11)	10107.0	NM_028110	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	4.0	0.0	2.0	21.0	12.5	5.0
Merged-chr14-102922708-4	chr14	102922220	102923220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59912.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127289371-4	chr10	127288870	127289870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033072)	promoter-TSS (NM_033072)	-352.0	NM_033072	110962.0	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	28.5	94.0	88.0	42.0	89.0	67.0
Merged-chr16-56717527-4	chr16	56717022	56718022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252443)	promoter-TSS (NM_001252443)	-72.0	NM_001357126	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44281147-4	chr7	44280632	44281632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-7974.0	NM_001361137	102632142.0		NM_001361137		Gm18905	-	predicted gene, 18905	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46535361-4	chr18	46534845	46535845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9374.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-80949677-1	chr13	80949177	80950177	+	1000.0	f0_balb.idr	Intergenic	Intergenic	9274.0	NR_103550	71416.0	Mm.415500	NR_103550		5430425K12Rik	-	RIKEN cDNA 5430425K12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69560145-4	chr3	69559661	69560661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38799.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	0.0	4.5	1.5	0.0	0.0	2.0
Merged-chr10-7681573-4	chr10	7681070	7682070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033219)	promoter-TSS (NR_033219)	361.0	NM_010690	16798.0	Mm.34083	NM_010690	ENSMUSG00000040021	Lats1	AW208599	large tumor suppressor	protein-coding	4.0	22.5	9.5	11.5	30.0	15.5
Merged-chr16-44778948-4	chr16	44778444	44779444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	13208.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4877367-4	chr16	4876877	4877877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145359, intron 1 of 2)	intron (NM_145359, intron 1 of 2)	2474.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67698668-4	chr18	67698182	67699182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008977, intron 2 of 9)	intron (NM_008977, intron 2 of 9)	25939.0	NM_001127177	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	11.5	15.0	18.5	14.5	37.5	19.0
Merged-chr7-44955857-2	chr7	44955357	44956357	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077591, intron 8 of 10)	B2_Mm2|SINE|B2	12617.0	NM_011651	22116.0	Mm.84502	NM_011651	ENSMUSG00000059891	Tsks	Stk22s1|Tssks1	testis-specific serine kinase substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145234057-4	chr4	145233592	145234592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	12778.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27361591-4	chr7	27361081	27362081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_032610, exon 33 of 36)	exon (NM_032610, exon 33 of 36)	-5573.0	NM_138676	192192.0	Mm.21297	NM_138676	ENSMUSG00000089832	Shkbp1	B930062H15Rik|Sb1	Sh3kbp1 binding protein 1	protein-coding	0.0	15.5	1.0	6.0	6.0	1.0
Merged-chr9-119983835-4	chr9	119983318	119984318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357560)	promoter-TSS (NM_001357560)	-39.0	NM_001357562	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71270804-4	chr6	71270297	71271297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001354706)	promoter-TSS (NM_001354706)	-874.0	NR_106192	102465900.0		NR_106192	ENSMUSG00000098623	Mir8112	Gm27739|mmu-mir-8112	microRNA 8112	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58560416-4	chr9	58559910	58560910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19470.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106150336-4	chr8	106149842	106150842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133792)	promoter-TSS (NM_133792)	-12.0	NM_133792	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13159137-4	chr8	13158596	13159596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317353)	promoter-TSS (NM_001317353)	-65.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21993373-6	chr10	21992873	21993873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161850)	promoter-TSS (NM_001161850)	-517.0	NM_001161850	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	86.0	131.0	121.0	67.0	235.5	137.0
Merged-chr4-133754418-4	chr4	133753917	133754917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080819)	promoter-TSS (NM_001080819)	-806.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	2.0	14.5	8.5	1.5	18.0	15.0
Merged-chr9-101034892-1	chr9	101034392	101035392	+	1000.0	f0_c57.idr	promoter-TSS (NM_025835)	promoter-TSS (NM_025835)	-8.0	NM_025835	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	58.0	143.5	117.0	66.5	151.0	150.0
Merged-chr1-134679630-4	chr1	134679126	134680126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009307, intron 2 of 9)	MLT1G1|LTR|ERVL-MaLR	-29674.0	NM_001355726	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102510631-2	chr14	102510131	102511131	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	472001.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-131243833-2	chr6	131243333	131244333	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008462, intron 3 of 7)	intron (NM_008462, intron 3 of 7)	3529.0	NM_001170851	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	28.0	50.5	24.0	34.5	60.0	44.5
Merged-chr7-101663656-4	chr7	101663170	101664170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009191)	promoter-TSS (NM_009191)	-98.0	NM_009191	20480.0	Mm.3990	NM_009191	ENSMUSG00000001829	Clpb	AL118244|Skd3	ClpB caseinolytic peptidase B	protein-coding	0.0	0.0	0.0	0.0	2.5	0.0
Merged-chr18-56451822-4	chr18	56451313	56452313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	19681.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36041140-4	chr16	36040624	36041624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027113)	promoter-TSS (NM_027113)	-66.0	NM_027113	69544.0	Mm.37802	NM_027113	ENSMUSG00000034379	Wdr5b	2310009C03Rik|AI606931	WD repeat domain 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126941309-4	chr7	126940812	126941812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172747, intron 2 of 5)	intron (NM_172747, intron 2 of 5)	7847.0	NM_001347657	233879.0	Mm.444143	NM_001039645	ENSMUSG00000046378	Asphd1	A830007L07Rik|Gm168	aspartate beta-hydroxylase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120347600-4	chr11	120347097	120348097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105900)	promoter-TSS (NR_105900)	-184.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23556228-4	chr13	23555684	23556684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145713)	TTS (NM_145713)	1152.0	NM_145713	14957.0	Mm.247046	NM_145713	ENSMUSG00000052565	Hist1h1d	H1.3|H1D|H1f3|H1s-4	histone cluster 1, H1d	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-125561448-3	chr1	125560951	125561951	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028787, intron 1 of 15)	intron (NM_028787, intron 1 of 15)	449.0	NM_028787	74150.0	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67699752-4	chr18	67699260	67700260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008977, intron 2 of 9)	intron (NM_008977, intron 2 of 9)	24861.0	NM_001127177	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	46.0	132.5	69.0	44.0	179.5	87.0
Merged-chr11-109468373-4	chr11	109467871	109468871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029842, intron 1 of 5)	intron (NM_001029842, intron 1 of 5)	4858.0	NM_134038	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-75441515-4	chr9	75441014	75442014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039522)	promoter-TSS (NM_001039522)	-10.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	48.5	90.5	57.0	55.0	103.5	59.0
Merged-chr17-45584246-4	chr17	45583752	45584752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001199116)	TTS (NM_001199116)	8141.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	8.0	48.0	33.5	8.0	48.5	31.5
Merged-chr2-45231776-4	chr2	45231269	45232269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114327.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105790507-7	chr1	105789986	105790986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	9763.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149518124-4	chr4	149517622	149518622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023465)	promoter-TSS (NM_023465)	-119.0	NM_023465	67087.0	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100227421-4	chr7	100226977	100227977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027629)	promoter-TSS (NM_027629)	-130.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35242775-4	chr17	35242295	35243295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252457)	promoter-TSS (NM_001252457)	-22.0	NM_001252457	53817.0	Mm.439827	NM_019693	ENSMUSG00000019432	Ddx39b	0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	protein-coding	222.0	524.0	308.0	214.5	414.5	304.5
Merged-chr11-120630112-4	chr11	120629568	120630568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010756, intron 1 of 2)	intron (NM_010756, intron 1 of 2)	3479.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-149083652-3	chr3	149083148	149084148	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-129013.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.0	1.0	2.5	1.5	10.0	4.0
Merged-chr5-142448252-4	chr5	142447759	142448759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 2 of 8)	intron (NM_199068, intron 2 of 8)	-15672.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8590623-2	chr11	8590123	8591123	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 3 of 30)	intron (NM_001083587, intron 3 of 30)	73912.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-127976704-4	chr1	127976199	127977199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 12 of 20)	intron (NM_001285945, intron 12 of 20)	107926.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59616702-4	chr10	59616208	59617208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033259)	promoter-TSS (NM_001033259)	-16.0	NM_001033259	215999.0	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50753260-4	chr16	50752759	50753759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20486.0	NR_028300	68190.0	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-113762528-2	chr11	113762028	113763028	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10713.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-100442207-1	chr3	100441707	100442707	+	1000.0	f1_c57bl6.idr	Intergenic	ERVB7_2B-LTR_MM|LTR|ERVK	15802.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84191710-1	chr8	84191210	84192210	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-12749.0	NR_029821	723819.0		NR_029821	ENSMUSG00000065483	Mir181c	Mirn181c|mir-181c	microRNA 181c	ncRNA	41.5	85.0	70.0	61.5	110.0	71.0
Merged-chr8-114439547-4	chr8	114439056	114440056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019573)	promoter-TSS (NM_019573)	-96.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-72583222-4	chr1	72582724	72583724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018817)	promoter-TSS (NM_018817)	-27.0	NM_018817	54380.0	Mm.274232	NM_018817	ENSMUSG00000039354	Smarcal1	6030401P21Rik|AI851716|Mharp	SWI/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-37358886-4	chr2	37358403	37359403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026176, intron 1 of 3)	intron (NM_026176, intron 1 of 3)	429.0	NM_026176	67466.0	Mm.30709	NM_026176	ENSMUSG00000009030	Pdcl	1200011E13Rik|AW108059|PhLP1	phosducin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70024896-4	chr14	70024396	70025396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 4 of 6)	intron (NM_028560, intron 4 of 6)	-52549.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85736618-4	chr1	85736115	85737115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177055)	promoter-TSS (NM_177055)	-9.0	NM_177055	319997.0	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-75957011-4	chr3	75956523	75957523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175193)	promoter-TSS (NM_175193)	-74.0	NM_001291069	73124.0	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150782545-4	chr2	150782050	150783050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-4246.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60252753-4	chr10	60252244	60253244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24884.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-40230509-4	chr1	40230035	40231035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008362, intron 1 of 10)	intron (NM_008362, intron 1 of 10)	5455.0	NM_008362	16177.0	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73410296-4	chr14	73409779	73410779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24990.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73237923-4	chr14	73237434	73238434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175116)	promoter-TSS (NM_175116)	43.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34604007-7	chr17	34603494	34604494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019403)	promoter-TSS (NM_019403)	-433.0	NM_019403	54197.0	Mm.274542	NM_019403	ENSMUSG00000015478	Rnf5	2410131O05Rik|AA407576|NG2	ring finger protein 5	protein-coding	0.0	0.5	0.0	0.0	1.5	1.0
Merged-chr14-57387165-4	chr14	57386658	57387658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030004, intron 1 of 7)	intron (NM_030004, intron 1 of 7)	11325.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50096669-4	chr16	50096152	50097152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23800.0	NR_045935	224180.0	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53744699-4	chr18	53744208	53745208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178686)	promoter-TSS (NM_178686)	-161.0	NM_178686	225523.0	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding	101.5	218.0	156.0	86.5	171.5	120.0
Merged-chr19-34521602-4	chr19	34521103	34522103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	5871.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3898241-4	chr7	3897743	3898743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289428)	promoter-TSS (NM_001289428)	-93.0	NM_001289428	18729.0	Mm.326531	NM_008848		Pira6	12M1|Pira10|p91B	paired-Ig-like receptor A6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120371417-2	chr11	120370917	120371917	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027980, intron 7 of 9)	intron (NM_027980, intron 7 of 9)	7329.0	NM_027980	71885.0	Mm.274890	NM_027980	ENSMUSG00000025384	Faap100	2310003H01Rik	Fanconi anemia core complex associated protein 100	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94285406-4	chr13	94284881	94285881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029153)	promoter-TSS (NM_029153)	-100.0	NM_029153	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-63895369-4	chr17	63894888	63895888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286415, intron 1 of 17)	intron (NM_001286415, intron 1 of 17)	17322.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-47324462-2	chr4	47323962	47324962	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28760.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38396315-4	chr16	38395805	38396805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_134102, exon 11 of 11)	3' UTR (NM_134102, exon 11 of 11)	34115.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34262633-2	chr17	34262134	34263134	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207105)	promoter-TSS (NM_207105)	-593.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	171.5	611.0	370.5	205.0	665.0	317.5
Merged-chr11-44373029-4	chr11	44372502	44373502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27061.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	49.5	28.0	43.5	7.0	21.5	11.0
Merged-chr8-111562035-4	chr8	111561526	111562526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168623, intron 1 of 4)	intron (NM_001168623, intron 1 of 4)	23683.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	36.0	95.5	56.0	55.5	103.0	69.0
Merged-chr10-39417804-4	chr10	39417320	39418320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	48021.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135266084-4	chr1	135265592	135266592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159624, intron 7 of 9)	intron (NM_001159624, intron 7 of 9)	-7620.0	NM_007921	13710.0	Mm.441439	NM_007921	ENSMUSG00000003051	Elf3	ESE-1|ESX|jen	E74-like factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20898618-4	chr9	20898125	20899125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016876)	promoter-TSS (NM_016876)	-35.0	NM_016876	53356.0	Mm.427309	NM_016876	ENSMUSG00000070319	Eif3g	44kDa|D0Jmb4|Eif3s4|TU-189B2|eIF3-p44|p44	eukaryotic translation initiation factor 3, subunit G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-89889235-4	chr13	89888697	89889697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028012, intron 7 of 7)	intron (NM_028012, intron 7 of 7)	-146685.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	2.0	25.0	14.0	2.0	61.5	8.0
Merged-chr9-121352408-4	chr9	121351916	121352916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	-14542.0	NM_001357973	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0.5	8.5	3.0	0.0	15.5	4.5
Merged-chr2-129598151-2	chr2	129597651	129598651	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	2689.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	46.0	97.0	62.5	52.0	70.5	42.5
Merged-chr10-19850048-2	chr10	19849548	19850548	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029529, intron 1 of 1)	CpG	1411.0	NM_029529	76157.0	Mm.74324	NM_029529	ENSMUSG00000050473	Slc35d3	6230421J19Rik|Frcl1	solute carrier family 35, member D3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11777009-4	chr11	11776500	11777500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31962.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-8661992-4	chr8	8661491	8662491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1218.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84038344-4	chr12	84037847	84038847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134247)	promoter-TSS (NM_134247)	-32.0	NM_134247	171282.0	Mm.482217	NM_134247	ENSMUSG00000052392	Acot4	B430212I04Rik|PTE-Ib|Pte1b|Pte2b	acyl-CoA thioesterase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43560811-2	chr13	43560311	43561311	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081059)	promoter-TSS (NM_001081059)	-620.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167960455-4	chr2	167959955	167960955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	28128.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191835056-4	chr1	191834553	191835553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13580.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	2.0	5.0	7.0	0.5	10.5	12.0
Merged-chr2-84650766-4	chr2	84650268	84651268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007615)	promoter-TSS (NM_007615)	-28.0	NM_001355066	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	81.0	189.0	151.0	48.5	96.5	120.0
Merged-chr2-164879913-4	chr2	164879426	164880426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146129, intron 1 of 16)	CpG	558.0	NM_146129	228866.0	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	37.5	120.0	86.0	18.5	56.5	64.0
Merged-chr10-82241270-4	chr10	82240741	82241741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001105557)	promoter-TSS (NM_001105557)	34.0	NM_001105557	237411.0		NM_172789	ENSMUSG00000062931	Zfp938	B230315N10Rik	zinc finger protein 938	protein-coding	14.5	10.0	12.0	6.5	8.5	15.5
Merged-chr13-36531687-4	chr13	36531211	36532211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 5 of 5)	MIRc|SINE|MIR	202766.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	1.0	1.5	4.0	1.0	1.5	4.0
Merged-chr17-22424203-4	chr17	22423694	22424694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331195)	promoter-TSS (NM_001331195)	-8.0	NM_001331197	74149.0	Mm.30767	NM_198003	ENSMUSG00000071266	Zfp946	1300003B13Rik	zinc finger protein 946	protein-coding	10.5	21.5	15.0	10.5	20.5	15.0
Merged-chr7-142737990-2	chr7	142737490	142738490	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58264.0	NM_001185084	16334.0	Mm.4946	NM_008387	ENSMUSG00000000215	Ins2	AA986540|Ins-2|InsII|Mody|Mody4	insulin II	protein-coding	0.0	0.0	5.0	0.0	2.0	3.5
Merged-chr3-38202053-4	chr3	38201554	38202554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6065.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-20945536-4	chr5	20945041	20946041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080977, intron 1 of 7)	MLT1B|LTR|ERVL-MaLR	-5448.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-51476572-4	chr1	51476097	51477097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028696, intron 2 of 5)	intron (NM_028696, intron 2 of 5)	1802.0	NM_001310548	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-109996441-4	chr5	109995953	109996953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145563)	promoter-TSS (NM_145563)	-74.0	NM_145563	69504.0	Mm.441438	NM_145563	ENSMUSG00000066613	Zfp932	2310001H12Rik|Znf431	zinc finger protein 932	protein-coding	1.5	5.5	0.0	8.0	0.0	3.0
Merged-chr11-101972935-4	chr11	101972437	101973437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028207, exon 3 of 3)	3' UTR (NM_028207, exon 3 of 3)	-5922.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139252613-4	chr5	139252123	139253123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163316)	promoter-TSS (NM_001163316)	299.0	NM_026269	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91452186-6	chr16	91451709	91452709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12895.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25303708-2	chr15	25303208	25304208	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110056.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	4.0	9.0	11.0
Merged-chr2-173771908-4	chr2	173771403	173772403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019806, intron 3 of 5)	intron (NM_019806, intron 3 of 5)	34332.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120598523-4	chr11	120598027	120599027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011568)	promoter-TSS (NM_011568)	-5.0	NM_001038230	66156.0	Mm.21645	NM_025389	ENSMUSG00000025135	Anapc11	1110011I19Rik|R75218	anaphase promoting complex subunit 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41552834-4	chr13	41552305	41553305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-53411.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80741251-4	chr10	80740776	80741776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007460, intron 1 of 30)	intron (NM_007460, intron 1 of 30)	999.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-157412676-4	chr1	157412196	157413196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177644)	promoter-TSS (NM_177644)	-101.0	NM_177644	226525.0	Mm.235028	NM_177644	ENSMUSG00000070565	Rasal2	6530401P13|A330066M24Rik	RAS protein activator like 2	protein-coding	11.0	15.0	15.0	2.0	10.0	26.5
Merged-chr5-76304888-4	chr5	76304366	76305366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289826)	promoter-TSS (NM_001289826)	-10.0	NR_152171	665055.0	Mm.425276	NR_152171	ENSMUSG00000098449	Gm7467	EG665055	predicted gene 7467	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166806140-1	chr2	166805640	166806640	+	1000.0	f0_balb.idr	intron (NM_001085495, intron 1 of 38)	intron (NM_001085495, intron 1 of 38)	559.0	NM_001085495	99371.0	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89730697-4	chr3	89730179	89731179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019655)	promoter-TSS (NM_019655)	-39.0	NM_001146296	56417.0	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|DRADA|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35972294-4	chr17	35971799	35972799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145487)	TTS (NM_145487)	-2549.0	NM_013854	224742.0	Mm.329022	NM_013854	ENSMUSG00000038762	Abcf1	AU041969|Abc50|D17Wsu166e|GCN20	ATP-binding cassette, sub-family F (GCN20), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112506010-1	chr13	112505510	112506510	+	1000.0	f1_balb.idr	3' UTR (NM_010560, exon 17 of 17)	3' UTR (NM_010560, exon 17 of 17)	41940.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	8.0	26.5	6.5	1.0	10.0	3.5
Merged-chr5-150522645-4	chr5	150522165	150523165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009765)	promoter-TSS (NM_009765)	44.0	NM_001081001	12190.0	Mm.236256	NM_009765	ENSMUSG00000041147	Brca2	Fancd1|RAB163	breast cancer 2, early onset	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29266890-2	chr6	29266390	29267390	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5598.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47373884-4	chr14	47373381	47374381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145953)	promoter-TSS (NM_001145953)	21.0	NM_001145953	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	160.0	352.5	269.5	143.5	288.5	245.0
Merged-chr17-37046052-4	chr17	37045567	37046567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019439, exon 1 of 23)	5' UTR (NM_019439, exon 1 of 23)	101.0	NM_019439	54393.0	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89912466-4	chr3	89911944	89912944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	752.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	30.0	127.0	102.5	47.5	159.0	78.0
Merged-chr1-87813791-4	chr1	87813297	87814297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009118, intron 4 of 15)	intron (NM_009118, intron 4 of 15)	10117.0	NM_009118	20215.0	Mm.1276	NM_009118	ENSMUSG00000056055	Sag	A930001K18Rik|Arr1|Irbp|arrestin	S-antigen, retina and pineal gland (arrestin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118513137-4	chr2	118512633	118513633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31454.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	30.5	53.0	27.5	23.5	46.0	25.0
Merged-chr2-26237448-4	chr2	26236880	26237880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302956)	promoter-TSS (NM_001302956)	19.0	NM_153559	227638.0	Mm.116769	NM_153559	ENSMUSG00000036327	Qsox2	BC030934|Qscn6l1|Soxn	quiescin Q6 sulfhydryl oxidase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104220539-4	chr3	104220049	104221049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159354)	promoter-TSS (NM_001159354)	-143.0	NM_001159354	99470.0	Mm.264849	NM_133853	ENSMUSG00000052539	Magi3	4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding	0.0	0.0	0.0	2.0	1.0	1.0
Merged-chr12-70946818-4	chr12	70946301	70947301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019785, intron 4 of 12)	intron (NM_019785, intron 4 of 12)	8944.0	NM_019785	56444.0	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80751901-2	chr7	80751401	80752401	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_016721, exon 13 of 38)	exon (NM_016721, exon 13 of 38)	51430.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88192918-4	chr7	88192415	88193415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-85170.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27783276-4	chr15	27782764	27783764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 34 of 56)	intron (NM_001081302, intron 34 of 56)	-101722.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31145937-6	chr3	31145438	31146438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3982.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78937141-4	chr17	78936684	78937684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028611)	promoter-TSS (NM_028611)	49.0	NM_028611	73694.0	Mm.104959	NM_028611	ENSMUSG00000024082	Ndufaf7	2410091C18Rik|AL033374|PRO1853	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 7	protein-coding	24.0	44.0	29.5	9.5	29.5	40.0
Merged-chr3-30969353-4	chr3	30968838	30969838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165955)	promoter-TSS (NM_001165955)	77.0	NM_001165954	241915.0	Mm.233173	NM_153421	ENSMUSG00000037652	Phc3	E030046K01Rik|Edr3|Hph3	polyhomeotic 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135314637-4	chr4	135314161	135315161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38553.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106106369-4	chr11	106105856	106106856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 2 of 15)	intron (NM_011947, intron 2 of 15)	21454.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37680512-4	chr13	37680026	37681026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-145512.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96269628-4	chr3	96269142	96270142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175666)	promoter-TSS (NM_175666)	-58.0	NM_175666	319189.0	Mm.297655	NM_175666	ENSMUSG00000105827	Hist2h2bb	H2b-616	histone cluster 2, H2bb	protein-coding	46.5	115.5	91.5	54.0	156.0	116.5
Merged-chr5-114784784-4	chr5	114784299	114785299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026718, intron 1 of 14)	intron (NM_026718, intron 1 of 14)	9659.0	NM_026718	68420.0	Mm.275554	NM_026718	ENSMUSG00000041870	Ankrd13a	1100001D10Rik|ANKRD13|AU046136	ankyrin repeat domain 13a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21165763-2	chr9	21165263	21166263	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183408)	promoter-TSS (NM_183408)	49.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-40846823-4	chr3	40846318	40847318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038067)	promoter-TSS (NR_038067)	36.0	NM_028140	72175.0	Mm.130610	NM_028140	ENSMUSG00000025759	Mfsd8	2810423E13Rik|AI836898|AV142426|Cln7	major facilitator superfamily domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-92459329-4	chr2	92458811	92459811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_211358, exon 1 of 2)	5' UTR (NM_211358, exon 1 of 2)	483.0	NM_211358	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43562489-4	chr4	43561977	43562977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013497)	promoter-TSS (NM_013497)	106.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80798539-4	chr15	80798054	80799054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177124)	promoter-TSS (NM_177124)	-56.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65551636-2	chr9	65551136	65552136	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153119)	TTS (NM_153119)	28451.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	55.5	132.5	90.0	57.0	132.5	95.5
Merged-chr9-22308954-4	chr9	22308449	22309449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1311.0	NM_145612	235050.0	Mm.306038	NM_145612	ENSMUSG00000066829	Zfp810	BC005471	zinc finger protein 810	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102687280-4	chr7	102686766	102687766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001307998)	promoter-TSS (NM_001307998)	61.0	NM_198012	101700.0	Mm.39043	NM_198012	ENSMUSG00000073968	Trim68	AI894158|F730114J12Rik|Rnf137|SS-56	tripartite motif-containing 68	protein-coding	13.0	20.5	21.5	6.0	25.5	19.5
Merged-chr17-27615571-4	chr17	27615061	27616061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019837, intron 1 of 4)	L2|LINE|L2	7403.0	NM_001291046	56409.0	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	30.0	36.5	42.0	22.5	31.5	34.0
Merged-chr9-104239287-4	chr9	104238788	104239788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 2 of 56)	intron (NM_001359740, intron 2 of 56)	23642.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4950785-1	chr7	4950285	4951285	+	1000.0	f0_balb.idr	Intergenic	Intergenic	13563.0	NM_001146329	381836.0	Mm.297829	NM_001146329	ENSMUSG00000030433	Sbk2	Gm1079|Sgk069	SH3-binding domain kinase family, member 2	protein-coding	0.0	3.5	0.5	0.0	19.0	6.5
Merged-chr2-118388478-4	chr2	118387963	118388963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177806)	promoter-TSS (NM_001177806)	-154.0	NM_001355383	27103.0	Mm.217616	NM_013719	ENSMUSG00000005102	Eif2ak4	2610011M03|GCN2|MGCN2	eukaryotic translation initiation factor 2 alpha kinase 4	protein-coding	73.5	147.0	137.0	40.0	163.5	125.0
Merged-chr10-24164736-4	chr10	24164258	24165258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016797, intron 2 of 9)	intron (NM_016797, intron 2 of 9)	15441.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87449609-2	chr11	87449109	87450109	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	B2_Mm1t|SINE|B2	22018.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142814974-2	chr5	142814474	142815474	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178242, intron 2 of 15)	intron (NM_178242, intron 2 of 15)	2413.0	NM_178242	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105413605-4	chr8	105413110	105414110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177791)	promoter-TSS (NM_177791)	-12.0	NM_001170788	270091.0	Mm.212709	NM_001033371	ENSMUSG00000054320	Lrrc36	BC036564	leucine rich repeat containing 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-69226167-4	chr17	69225670	69226670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 3 of 21)	RLTR16|LTR|ERVK	51036.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	10.5	25.5	10.0	10.0	14.5	9.0
Merged-chr16-24859952-4	chr16	24859431	24860431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 9 of 12)	intron (NM_178665, intron 9 of 12)	138076.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108460584-4	chr9	108460108	108461108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133744)	promoter-TSS (NM_133744)	90.0	NM_133744	72454.0	Mm.46488	NM_133744	ENSMUSG00000049305	Ccdc71	2600016J21Rik	coiled-coil domain containing 71	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-83928047-4	chr12	83927560	83928560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6126.0	NR_073564	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-106813395-4	chr13	106813008	106814008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360897, intron 29 of 30)	intron (NM_001360897, intron 29 of 30)	123450.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	40.0	81.0	49.5	46.5	70.0	45.5
Merged-chr7-99858986-4	chr7	99858464	99859464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025668)	promoter-TSS (NM_025668)	-81.0	NM_025668	66624.0	Mm.30043	NM_025668	ENSMUSG00000035227	Spcs2	5730406I15Rik|AA408713|mKIAA0102	signal peptidase complex subunit 2 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-46822249-4	chr14	46821759	46822759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022023)	promoter-TSS (NM_022023)	-17.0	NM_022023	63985.0	Mm.87312	NM_022023	ENSMUSG00000062014	Gmfb	3110001H22Rik|3110001O16Rik|AI851627|C79176|D14Ertd630e	glia maturation factor, beta	protein-coding	104.5	191.0	205.5	85.0	170.0	143.0
Merged-chr1-131360954-4	chr1	131360451	131361451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 5 of 22)	intron (NM_001081011, intron 5 of 22)	-81388.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	22.0	27.5	26.5	19.5	24.5	24.0
Merged-chr14-48422183-3	chr14	48421700	48422700	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23923.0	NM_001310584	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	11.0	4.5	1.5	0.0	0.0	2.0
Merged-chr5-118408189-4	chr5	118407664	118408664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-152555.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150087295-4	chr4	150086806	150087806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177366)	promoter-TSS (NM_177366)	-197.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	1.5	2.5	0.5	4.0	1.5	0.0
Merged-chr1-88224255-4	chr1	88223754	88224754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2766.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20058278-4	chr10	20057773	20058773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 9 of 29)	intron (NM_008580, intron 9 of 29)	-90647.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0.0	1.0	0.0	0.0	1.0	1.0
Merged-chr2-29346728-4	chr2	29346213	29347213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026896)	promoter-TSS (NM_026896)	-97.0	NM_026896	68975.0	Mm.330109	NM_026896	ENSMUSG00000026799	Med27	1500015J03Rik|2310042P07Rik|AA682045|Crsp8|D2Ertd434e	mediator complex subunit 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115559415-4	chr5	115558897	115559897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007475)	promoter-TSS (NM_007475)	-70.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	11.5	23.5	24.0	8.5	10.5	16.0
Merged-chr15-88862022-4	chr15	88861526	88862526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145478)	promoter-TSS (NM_145478)	-168.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105991352-5	chr1	105990900	105991900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001122676, exon 1 of 14)	exon (NM_001122676, exon 1 of 14)	994.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-91191436-4	chr15	91190944	91191944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001358967, exon 1 of 10)	exon (NM_001358967, exon 1 of 10)	563.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75940981-4	chr15	75940476	75941476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030199)	promoter-TSS (NM_030199)	24.0	NM_030199	78834.0	Mm.273264	NM_030199	ENSMUSG00000050846	Zfp623	2610029D06Rik|AI847036	zinc finger protein 623	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-14635463-4	chr19	14634978	14635978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37295.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8868807-2	chr10	8868307	8869307	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	17263.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.0	11.5	4.5	6.0	4.0	8.5
Merged-chr19-40659699-4	chr19	40659210	40660210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009848)	promoter-TSS (NM_009848)	-60.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	2.5	15.5	15.5	6.5	24.0	18.0
Merged-chr16-22119720-4	chr16	22119248	22120248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	43551.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-47676041-1	chr8	47675541	47676541	+	1000.0	f0_balb.idr	promoter-TSS (NM_023503)	promoter-TSS (NM_023503)	-882.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75247056-2	chr18	75246556	75247556	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027727, intron 16 of 16)	MTD|LTR|ERVL-MaLR	50261.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	0.0	8.0	0.0	0.0	0.0	0.0
Merged-chr19-32389210-4	chr19	32388720	32389720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033198)	promoter-TSS (NR_033198)	4.0	NR_033198	67188.0	Mm.391160	NR_033198	ENSMUSG00000097787	2700046G09Rik	-	RIKEN cDNA 2700046G09 gene	ncRNA	93.0	141.5	181.0	69.0	105.5	112.0
Merged-chr7-90039667-4	chr7	90039178	90040178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 3 of 5)	intron (NR_110365, intron 3 of 5)	10519.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	68.0	86.0	71.5	74.0	123.5	72.5
Merged-chr4-116557589-4	chr4	116557098	116558098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029868)	promoter-TSS (NM_029868)	-129.0	NM_029868	77110.0	Mm.41715	NM_029868	ENSMUSG00000034042	Gpbp1l1	5330440M15Rik|BC002292	GC-rich promoter binding protein 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-37312492-4	chr3	37311928	37312928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001255992)	promoter-TSS (NM_001255992)	18.0	NM_145825	207175.0	Mm.344708	NM_145825	ENSMUSG00000045031	Cetn4	-	centrin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-62750564-4	chr1	62750053	62751053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 7 of 16)	intron (NM_001077404, intron 7 of 16)	44179.0	NR_040601	74992.0	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59731297-4	chr9	59730816	59731816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19333.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11455363-4	chr4	11454855	11455855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30603.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7781010-4	chr10	7780502	7781502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346750)	promoter-TSS (NM_001346750)	-85.0	NM_001346750	215751.0	Mm.471825	NM_145418	ENSMUSG00000040006	Ginm1	AA589616	glycoprotein integral membrane 1	protein-coding	5.0	5.0	6.5	3.0	8.5	13.5
Merged-chr1-55525735-2	chr1	55525234	55526234	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	MTC|LTR|ERVL-MaLR	119788.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	8.0	29.0	32.5	8.0	28.5	32.0
Merged-chr4-135946433-4	chr4	135945942	135946942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008254)	promoter-TSS (NM_008254)	-6.0	NM_008254	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50588184-4	chr17	50587694	50588694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	MTD|LTR|ERVL-MaLR	78647.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	7.5	49.5	17.5	12.0	51.0	21.0
Merged-chr15-79659083-4	chr15	79658567	79659567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029407)	promoter-TSS (NM_029407)	-111.0	NM_029407	75729.0	Mm.78946	NM_029407	ENSMUSG00000042564	Fam227a	4933432B09Rik	family with sequence similarity 227, member A	protein-coding	0.0	3.0	4.5	0.0	3.0	4.5
Merged-chr12-112615564-2	chr12	112615064	112616064	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_198411)	TTS (NM_198411)	-4483.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29624136-4	chr2	29623629	29624629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	4409.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75796556-4	chr7	75796023	75797023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51815.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45409539-4	chr4	45409039	45410039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001009949)	promoter-TSS (NM_001009949)	-773.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	278.5	652.0	548.5	214.0	471.5	406.0
Merged-chr7-98805057-4	chr7	98804558	98805558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30054.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	8.0	32.5	7.0	3.0	25.0	6.5
Merged-chr13-51645667-4	chr13	51645165	51646165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025415, intron 1 of 2)	CpG	433.0	NM_025415	66197.0	Mm.222228	NM_025415	ENSMUSG00000062248	Cks2	1110038L14Rik|CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83172303-4	chr15	83171808	83172808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029787)	promoter-TSS (NM_029787)	-100.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62848254-2	chr4	62847754	62848754	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117320.0	NM_028326	72701.0	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70631612-4	chr8	70631121	70632121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001330687, exon 2 of 3)	5' UTR (NM_001330687, exon 2 of 3)	474.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	33.0	106.0	52.0	15.5	36.5	28.5
Merged-chr3-79842771-4	chr3	79842271	79843271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027495)	promoter-TSS (NM_027495)	-109.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	52.0	107.0	83.0	46.5	73.0	61.0
Merged-chr16-21333325-4	chr16	21332834	21333834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131983)	promoter-TSS (NR_131983)	22.0	NR_131983	76222.0	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79294965-4	chr8	79294442	79295442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133823)	promoter-TSS (NM_133823)	14.0	NM_133823	109136.0	Mm.26510	NM_133823	ENSMUSG00000037022	Mmaa	2810018E08Rik|AI840684	methylmalonic aciduria (cobalamin deficiency) type A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118700180-4	chr14	118699663	118700663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163676, intron 1 of 29)	MTC|LTR|ERVL-MaLR	6056.0	NM_001163676	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-80948933-2	chr8	80948446	80949446	+	1000.0	f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	65960.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	57.5	121.0	95.0	40.5	82.0	61.0
Merged-chr5-64229739-2	chr5	64229239	64230239	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289514)	promoter-TSS (NM_001289514)	-618.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41361235-4	chr4	41360731	41361731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355508, intron 1 of 6)	intron (NM_001355508, intron 1 of 6)	9268.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	1.0	38.5	18.0	16.0	27.0	35.0
Merged-chr16-78236963-4	chr16	78236462	78237462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18492.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43234601-6	chr5	43234151	43235151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175937, exon 1 of 11)	exon (NM_175937, exon 1 of 11)	703.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51911708-4	chr11	51911225	51912225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-54095.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-12961919-4	chr7	12961432	12962432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-3906.0	NM_001362140	243834.0	Mm.133086	NM_178732	ENSMUSG00000004500	Zfp324	A930002M05|D430030K24Rik|ZF5128	zinc finger protein 324	protein-coding	93.0	274.0	202.5	94.0	180.0	189.5
Merged-chr14-14120969-4	chr14	14120486	14121486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025550)	promoter-TSS (NM_025550)	-82.0	NM_025550	66413.0	Mm.27591	NM_025550	ENSMUSG00000021737	Psmd6	2400006A19Rik	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70153641-6	chr14	70153125	70154125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001004155)	TTS (NM_001004155)	166.0	NM_146055	219158.0	Mm.218284	NM_146055	ENSMUSG00000033712	Ccar2	2610301G19Rik|Dbc1|mKIAA1967	cell cycle activator and apoptosis regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87042753-4	chr6	87042262	87043262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013528)	promoter-TSS (NM_013528)	-84.0	NM_013528	14583.0	Mm.19893	NM_013528	ENSMUSG00000029992	Gfpt1	2810423A18Rik|AI324119|AI449986|GFA|GFAT|GFAT1|GFAT1m|Gfpt	glutamine fructose-6-phosphate transaminase 1	protein-coding	91.0	235.0	134.5	112.5	276.0	170.5
Merged-chr7-105629716-1	chr7	105629216	105630216	+	1000.0	f1_c57bl6.idr	intron (NM_018880, intron 1 of 11)	intron (NM_018880, intron 1 of 11)	3855.0	NM_018880	55992.0	Mm.29290	NM_018880	ENSMUSG00000036989	Trim3	BERP1|HAC1|Rnf22	tripartite motif-containing 3	protein-coding	11.0	29.5	23.5	12.0	49.0	27.0
Merged-chr14-73239521-2	chr14	73239021	73240021	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175116, exon 1 of 1)	exon (NM_175116, exon 1 of 1)	1630.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-31804107-4	chr18	31803625	31804625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170966)	promoter-TSS (NM_001170966)	68.0	NM_001170966	74320.0	Mm.277705	NM_028866	ENSMUSG00000024400	Wdr33	1110001N06Rik|2310011G05Rik|2810021O11Rik|8430413N20Rik|WDC146	WD repeat domain 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69100638-2	chr11	69100138	69101138	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011065, exon 2 of 23)	5' UTR (NM_011065, exon 2 of 23)	486.0	NM_001159367	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57231583-4	chr16	57231075	57232075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358433)	promoter-TSS (NM_001358433)	-109.0	NM_001358433	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-83983301-2	chr18	83982801	83983801	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103261.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124746306-2	chr6	124745806	124746806	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007881, exon 5 of 10)	exon (NM_007881, exon 5 of 10)	-5227.0	NM_013535	14790.0	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102367311-4	chr12	102366864	102367864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 5 of 9)	intron (NM_177620, intron 5 of 9)	72449.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115329578-2	chr11	115329078	115330078	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172801, exon 7 of 8)	exon (NM_172801, exon 7 of 8)	-5153.0	NM_001347647	69602.0	Mm.101844	NM_027132	ENSMUSG00000018862	Otop3	2310011E08Rik	otopetrin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125351083-2	chr6	125350586	125351586	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011609, intron 1 of 9)	intron (NM_011609, intron 1 of 9)	1363.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	112.5	196.0	187.0	64.5	157.0	139.5
Merged-chr11-4704632-3	chr11	4704135	4705135	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356391)	promoter-TSS (NM_001356391)	-21.0	NM_001356391	67178.0	Mm.271056	NM_026015	ENSMUSG00000009076	Zmat5	2610510L01Rik|D11Bwg0572e|D11Bwg1548e	zinc finger, matrin type 5	protein-coding	19.0	39.5	46.5	5.0	38.0	24.5
Merged-chr3-132171753-4	chr3	132171247	132172247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020265, intron 1 of 3)	MER121|DNA|TcMar?	86455.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102365270-4	chr12	102364767	102365767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 5 of 9)	intron (NM_177620, intron 5 of 9)	74546.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55569906-4	chr12	55569409	55570409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4704.0	NM_001277340	79459.0	Mm.392781	NM_001277340	ENSMUSG00000063129	Aldoart2	4933425L11Rik|Aldo1-ps1|Aldoa-ps1	aldolase 1 A, retrogene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32133184-4	chr5	32132694	32133694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3278.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-137852593-1	chr3	137852093	137853093	+	1000.0	f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-11894.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-68434716-4	chr2	68434213	68435213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 1 of 17)	intron (NM_016866, intron 1 of 17)	37268.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-75872415-4	chr16	75871912	75872912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023380, intron 6 of 7)	intron (NM_023380, intron 6 of 7)	36854.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-82629808-4	chr10	82629322	82630322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011561)	promoter-TSS (NM_011561)	-16.0	NM_001358517	21665.0	Mm.284252	NM_011561	ENSMUSG00000034674	Tdg	E130317C12Rik|JZA-3|Jza1	thymine DNA glycosylase	protein-coding	56.5	193.5	87.5	54.5	106.5	72.5
Merged-chr11-98786684-4	chr11	98786184	98787184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8832.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44228347-4	chr9	44227862	44228862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 1 of 15)	intron (NM_007619, intron 1 of 15)	5684.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59771510-4	chr13	59771015	59772015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153538)	TTS (NM_153538)	1549.0	NR_015349	13996.0	Mm.490435	NR_015349		Etohd2	AW491659	ethanol decreased 2	ncRNA	25.5	53.5	26.0	24.5	41.5	39.0
Merged-chr5-3342411-4	chr5	3341908	3342908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1485.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-39269574-3	chr3	39269060	39270060	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6C|LTR|ERVK	382620.0	NM_183221	329628.0	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	70.5	89.0	89.0	19.0	24.5	21.0
Merged-chr3-57732056-4	chr3	57731544	57732544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4013.0	NM_011883	24017.0	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123377452-8	chr5	123376990	123377990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17308.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	40.0	51.0	38.5	36.5	50.0	38.5
Merged-chr1-35860892-4	chr1	35860355	35861355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-207545.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21414303-2	chr5	21413803	21414803	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 1 of 18)	intron (NM_029195, intron 1 of 18)	10374.0	NM_029195	75172.0	Mm.426695	NM_029195	ENSMUSG00000064280	Ccdc146	4930528G09Rik|mKIAA1505	coiled-coil domain containing 146	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108631241-4	chr12	108630721	108631721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163395, intron 1 of 12)	L1MEc|LINE|L1	-4532.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-91281302-2	chr13	91280802	91281802	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-57315.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-66256645-4	chr2	66256146	66257146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290669)	promoter-TSS (NM_001290669)	-29.0	NM_001290669	73668.0	Mm.250868	NM_001047604	ENSMUSG00000034848	Ttc21b	2410066K11Rik|Thm1|aln|mKIAA1992	tetratricopeptide repeat domain 21B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-129725038-4	chr5	129724584	129725584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008095)	promoter-TSS (NM_008095)	9.0	NM_008095	14467.0	Mm.12468	NM_008095	ENSMUSG00000029432	Nipsnap2	AV006093|Gbas	nipsnap homolog 2	protein-coding	18.5	70.0	53.0	2.0	25.5	22.0
Merged-chr7-113513724-4	chr7	113513229	113514229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027379)	promoter-TSS (NM_027379)	-105.0	NM_001285831	67420.0	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-26983724-2	chr5	26983224	26984224	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198886, intron 1 of 25)	intron (NM_001198886, intron 1 of 25)	-65475.0	NM_207282	13483.0	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65435964-4	chr5	65435466	65436466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009466)	promoter-TSS (NM_009466)	-124.0	NM_009466	22235.0	Mm.344831	NM_009466	ENSMUSG00000029201	Ugdh	Udpgdh	UDP-glucose dehydrogenase	protein-coding	7.5	15.5	15.5	7.5	13.5	19.5
Merged-chr13-30659928-4	chr13	30659431	30660431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037955)	promoter-TSS (NM_001037955)	-128.0	NM_001037955	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3235856-3	chr12	3235368	3236368	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015551)	promoter-TSS (NR_015551)	77.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84420722-3	chr8	84420211	84421211	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252060, intron 1 of 47)	L1ME1|LINE|L1	5347.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	0.0	5.5	5.5	52.5	162.5	103.0
Merged-chr11-68503019-4	chr11	68502527	68503527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081566)	promoter-TSS (NM_001081566)	8.0	NR_126154	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29323969-2	chr19	29323469	29324469	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013754, intron 1 of 1)	intron (NM_013754, intron 1 of 1)	1349.0	NM_013754	27356.0	Mm.306511	NM_013754	ENSMUSG00000050957	Insl6	RIF1	insulin-like 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-30468998-4	chr15	30468463	30469463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 2 of 21)	intron (NM_001355502, intron 2 of 21)	296370.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-104046824-4	chr5	104046306	104047306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028794)	promoter-TSS (NM_028794)	-58.0	NM_028794	74167.0	Mm.241484	NM_028794	ENSMUSG00000029310	Nudt9	1190002C07Rik|ADPR-PPase|AI462474	nudix (nucleoside diphosphate linked moiety X)-type motif 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99327252-4	chr5	99326735	99327735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-74308.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	89.0	168.0	153.5	105.0	267.5	151.5
Merged-chr4-123996006-4	chr4	123995501	123996501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78568.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	52.0	51.5	32.5	11.0	57.0	66.5
Merged-chr17-36020900-4	chr17	36020395	36021395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008207)	promoter-TSS (NM_008207)	-335.0	NM_008207	15042.0	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131866562-4	chr1	131866048	131867048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144875)	promoter-TSS (NM_144875)	-729.0	NM_144875	226422.0	Mm.34027	NM_144875	ENSMUSG00000026433	Rab29	Rab7l1	RAB29, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22185756-4	chr8	22185226	22186226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004140)	promoter-TSS (NM_001004140)	93.0	NM_001004140	80986.0	Mm.22448	NM_001004140	ENSMUSG00000037725	Ckap2	AI461656|AW228814|LB1	cytoskeleton associated protein 2	protein-coding	5.0	3.0	6.5	4.5	8.5	4.5
Merged-chr5-149265054-4	chr5	149264560	149265560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308462)	promoter-TSS (NM_001308462)	56.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120114023-4	chr8	120113521	120114521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163762)	promoter-TSS (NM_001163762)	-131.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46148536-4	chr19	46148035	46149035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008852)	promoter-TSS (NM_008852)	-210.0	NM_008852	18742.0	Mm.6255	NM_008852	ENSMUSG00000025229	Pitx3	Ptx3|ak	paired-like homeodomain transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	2.5	0.0
Merged-chr16-31275253-4	chr16	31274759	31275759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025800)	promoter-TSS (NM_025800)	18.0	NM_025800	66849.0	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|I-2|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	0.0	1.5	0.5	5.0	0.0	0.0
Merged-chr2-50669468-4	chr2	50668978	50669978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-240206.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59003913-4	chr13	59003411	59004411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	196214.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	151.0	368.0	326.5	167.0	344.0	325.0
Merged-chr9-85569053-4	chr9	85568574	85569574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	180260.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	16.0	30.0	23.5	2.0	25.0	7.0
Merged-chr14-20829975-4	chr14	20829472	20830472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6690.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21526596-2	chr9	21526096	21527096	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198794, intron 1 of 6)	intron (NM_001198794, intron 1 of 6)	419.0	NM_206536	382062.0	Mm.325205	NM_206536	ENSMUSG00000057191	AB124611	Gm1706	cDNA sequence AB124611	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156996657-4	chr1	156996156	156997156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57030.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	36.5	65.5	58.5	13.0	58.5	49.5
Merged-chr1-179645888-4	chr1	179645380	179646380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	-22351.0	NM_178653	109232.0	Mm.136458	NM_178653	ENSMUSG00000038936	Sccpdh	AW214504|C330023F11Rik	saccharopine dehydrogenase (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-159591779-8	chr2	159591268	159592268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-355573.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95930202-4	chr3	95929723	95930723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253758, intron 1 of 4)	CpG	966.0	NM_023210	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	2.0	0.0	1.0	1.0	0.0	0.0
Merged-chr10-122047834-4	chr10	122047333	122048333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001242411)	promoter-TSS (NM_001242411)	-518.0	NM_001081037	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113918882-4	chr5	113918380	113919380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10174.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	12.0	36.0	25.5	32.0	104.0	62.5
Merged-chr17-7925906-4	chr17	7925400	7926400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145968)	promoter-TSS (NM_145968)	-100.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66873495-4	chr14	66872960	66873960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4610.0	NM_001034881	432870.0	Mm.425890	NM_001034881	ENSMUSG00000075553	Gm5464	EG432870	predicted gene 5464	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12014275-4	chr15	12013778	12014778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4A|LTR|ERVK	-18271.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-72603038-4	chr14	72602509	72603509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 3 of 25)	intron (NM_207636, intron 3 of 25)	106994.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26561467-4	chr17	26560951	26561951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026170)	promoter-TSS (NM_026170)	-61.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	5.5	24.5	5.0	12.0	30.0	29.5
Merged-chr8-77483880-4	chr8	77483362	77484362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 1 of 22)	intron (NM_030113, intron 1 of 22)	-33194.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46502947-4	chr19	46502438	46503438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_053100, exon 1 of 6)	exon (NM_053100, exon 1 of 6)	1290.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	15.5	31.0	27.5	18.5	36.0	22.0
Merged-chr1-180402760-4	chr1	180402259	180403259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-72210.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62186632-4	chr18	62186116	62187116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	6516.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	30.0	17.0	22.0	20.0	45.0	34.5
Merged-chr15-53157465-3	chr15	53156968	53157968	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	188715.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33756188-4	chr16	33755691	33756691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 12 of 14)	intron (NM_175256, intron 12 of 14)	-37846.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31392983-4	chr14	31392482	31393482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	24695.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-3699484-4	chr16	3698986	3699986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18638.0	NM_001161790	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118419063-4	chr11	118418535	118419535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001267592)	promoter-TSS (NM_001267592)	83.0	NM_001025617	76025.0	Mm.177551	NM_029502	ENSMUSG00000025575	Cant1	5830420C20Rik|Apy1h|D11Bwg0554e|Entpd8|SCAN-1|Shapy	calcium activated nucleotidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93031801-4	chr16	93031276	93032276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-205702.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88288950-4	chr8	88288460	88289460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037723)	promoter-TSS (NM_001037723)	-106.0	NM_001037723	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	1.0	1.5	1.5	1.0	0.0	0.5
Merged-chr7-47035158-4	chr7	47034665	47035665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15475.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-5011414-4	chr16	5010915	5011915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133185, intron 5 of 10)	intron (NM_133185, intron 5 of 10)	2138.0	NM_133185	66049.0	Mm.27792	NM_133185	ENSMUSG00000022540	Rogdi	0610011C19Rik|AU020118|C76152|Lzf	rogdi homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170176204-2	chr1	170175704	170176704	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1240.0	NM_001305045	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46451576-4	chr4	46451064	46452064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130889, intron 1 of 6)	CpG	638.0	NM_130889	67628.0	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62231267-4	chr10	62230770	62231770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197996)	promoter-TSS (NM_197996)	-52.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47228846-4	chr19	47228386	47229386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163480)	promoter-TSS (NM_001163480)	43.0	NM_001163480	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-53398413-4	chr10	53397972	53398972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11410.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100602413-4	chr13	100601916	100602916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038602, intron 3 of 6)	intron (NM_001038602, intron 3 of 6)	14528.0	NM_178410	218518.0	Mm.25300	NM_178410	ENSMUSG00000021636	Marveld2	BC003296|MARVD2|Mrvldc2|Tric|Trica|Tricb|Tricc	MARVEL (membrane-associating) domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-51861289-2	chr7	51860789	51861789	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330608)	promoter-TSS (NM_001330608)	-726.0	NM_001330608	14453.0	Mm.207360	NM_008087	ENSMUSG00000030498	Gas2	Gas-2	growth arrest specific 2	protein-coding	0.0	11.0	13.0	0.0	12.0	17.0
Merged-chr13-43790814-4	chr13	43790310	43791310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	5698.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	96.5	153.0	64.5	8.0	35.0	55.5
Merged-chr12-76370441-4	chr12	76369938	76370938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172104)	promoter-TSS (NM_001172104)	172.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87423732-2	chr11	87423232	87424232	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031386, intron 1 of 30)	intron (NM_031386, intron 1 of 30)	-3859.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	3.0	17.5	6.0	2.5	20.0	5.5
Merged-chr12-111160170-4	chr12	111159655	111160655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_130987, exon 4 of 4)	non-coding (NR_130987, exon 4 of 4)	-6215.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-47688674-4	chr8	47688178	47689178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-13519.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-34550448-4	chr4	34549930	34550930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001007589)	promoter-TSS (NM_001007589)	-185.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-20551815-2	chr3	20551315	20552315	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-184638.0	NM_175086	11608.0	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117073474-2	chr2	117072974	117073974	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47597.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143579954-4	chr5	143579470	143580470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31264.0	NM_026050	67238.0	Mm.383219	NM_026050	ENSMUSG00000083012	Fam220a	1500026F15Rik|2810453I06Rik|AW047776|Acpin1|Sipar	family with sequence similarity 220, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103007141-4	chr11	103006636	103007636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026551, intron 1 of 4)	MIRb|SINE|MIR	-7215.0	NR_105896	102466988.0		NR_105896	ENSMUSG00000098613	Mir6931	Gm27303|mmu-mir-6931	microRNA 6931	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55622972-4	chr13	55622483	55623483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007596)	promoter-TSS (NM_007596)	-22.0	NM_007596	12328.0	Mm.2313	NM_007596	ENSMUSG00000021501	Caml	AI385748|Camlg	calcium modulating ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59816327-4	chr15	59815823	59816823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-21364.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4684025-4	chr16	4683496	4684496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023646)	promoter-TSS (NM_023646)	-74.0	NM_023646	83945.0	Mm.248337	NM_023646	ENSMUSG00000004069	Dnaja3	1200003J13Rik|1810053A11Rik|C81173|Tid-1|Tid1l	DnaJ heat shock protein family (Hsp40) member A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127622974-2	chr10	127622475	127623475	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1827.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	8.5	19.5	23.0	0.0	13.5	8.5
Merged-chr1-105990414-4	chr1	105989912	105990912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122676)	promoter-TSS (NM_001122676)	6.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	124.0	226.5	171.0	109.5	216.0	220.0
Merged-chr7-141562160-4	chr7	141561631	141562631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007459)	promoter-TSS (NM_007459)	-49.0	NM_001357068	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18348171-4	chr16	18347693	18348693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001272029)	promoter-TSS (NM_001272029)	11.0	NM_001272029	11877.0	Mm.293599	NM_033474	ENSMUSG00000000325	Arvcf	-	armadillo repeat gene deleted in velocardiofacial syndrome	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40097637-4	chr10	40097138	40098138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	MTC-int|LTR|ERVL-MaLR	44616.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-80065326-4	chr2	80064802	80065802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	RMER19C|LTR|ERVK	-26400.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	1.5	2.0	0.0	3.0	3.5	0.0
Merged-chr10-117821996-4	chr10	117821520	117822520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 3 of 7)	intron (NM_024457, intron 3 of 7)	23954.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139702396-4	chr5	139701918	139702918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33915.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	4.0	7.0	4.0	0.0	11.5	7.0
Merged-chr12-69177189-2	chr12	69176689	69177689	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081406, intron 3 of 3)	B2_Mm1a|SINE|B2	6878.0	NM_025589	66483.0	Mm.379115	NM_025589	ENSMUSG00000049751	Rpl36al	2410038A03Rik|RPL36A	ribosomal protein L36A-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-78872404-2	chr2	78871904	78872904	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356395, intron 2 of 5)	intron (NM_001356395, intron 2 of 5)	2726.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91727115-2	chr16	91726615	91727615	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026994, intron 1 of 11)	B3|SINE|B2	1687.0	NM_026994	66609.0	Mm.109823	NM_026994	ENSMUSG00000058240	Cryzl1	2210407J23Rik|2410006O11Rik|QOH-1	crystallin, zeta (quinone reductase)-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4755786-4	chr19	4755271	4756271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025717)	promoter-TSS (NM_025717)	-754.0	NM_025717	66704.0	Mm.396734	NM_025717	ENSMUSG00000033760	Rbm4b	4921506I22Rik|AI504630|AI506404|Lark2|Neosin	RNA binding motif protein 4B	protein-coding	12.0	4.0	3.0	2.5	5.0	1.5
Merged-chr17-70850591-3	chr17	70850115	70851115	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164076)	promoter-TSS (NM_001164076)	595.0	NM_009372	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8922152-6	chr12	8921705	8922705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008640, exon 1 of 7)	exon (NM_008640, exon 1 of 7)	898.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122921643-4	chr6	122921137	122922137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199311)	promoter-TSS (NM_199311)	-211.0	NM_199311	269799.0	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127316715-1	chr10	127316215	127317215	+	1000.0	f1_balb.idr	Intergenic	B3|SINE|B2	-4929.0	NM_001171582	216443.0	Mm.28173	NM_001003913	ENSMUSG00000040354	Mars	Metrs|Mtrns	methionine-tRNA synthetase	protein-coding	0.0	6.5	0.0	2.0	0.0	1.0
Merged-chr8-120156001-2	chr8	120155501	120156501	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163760, intron 8 of 12)	intron (NM_001163760, intron 8 of 12)	11072.0	NM_001163760	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7336933-4	chr9	7336454	7337454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7443.0	NM_001320077	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132564155-4	chr4	132563657	132564657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081211)	promoter-TSS (NM_001081211)	90.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3766573-4	chr4	3766069	3767069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	MTD|LTR|ERVL-MaLR	51605.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0.5	30.5	25.5	2.0	50.0	18.0
Merged-chr19-18713094-4	chr19	18712609	18713609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177640)	promoter-TSS (NM_177640)	-127.0	NM_177640	225995.0	Mm.28101	NM_177640	ENSMUSG00000047044	D030056L22Rik	-	RIKEN cDNA D030056L22 gene	protein-coding	9.5	8.5	10.5	4.5	21.0	10.0
Merged-chr17-48411190-2	chr17	48410690	48411690	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207219, intron 2 of 5)	intron (NM_207219, intron 2 of 5)	740.0	NM_001357904	106821.0	Mm.203943	NM_207219	ENSMUSG00000040771	Oard1	AI314976|AW558560	O-acyl-ADP-ribose deacylase 1	protein-coding	30.5	50.5	43.0	30.0	50.5	42.5
Merged-chr19-36834229-4	chr19	36833733	36834733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163635)	promoter-TSS (NM_001163635)	1.0	NM_001163635	74493.0	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-46958518-4	chr7	46958061	46959061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040695)	promoter-TSS (NM_001040695)	-43.0	NM_001040695	54122.0	Mm.1999	NM_016855	ENSMUSG00000043262	Uevld	8430408E05Rik|Attp	UEV and lactate/malate dehyrogenase domains	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-22051141-4	chr13	22050662	22051662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	7932.0	NM_178198	319183.0	Mm.371766	NM_178198	ENSMUSG00000069300	Hist1h2bj	-	histone cluster 1, H2bj	protein-coding	0.0	1.5	3.0	0.0	10.5	2.5
Merged-chr6-38433782-4	chr6	38433295	38434295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177185)	promoter-TSS (NM_177185)	-130.0	NM_177185	320538.0	Mm.302831	NM_177185	ENSMUSG00000038538	Ubn2	2900060J04Rik|6030408G03Rik|BC060116|D130059P03Rik|mKIAA2030	ubinuclein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-4103739-2	chr5	4103239	4104239	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020010, intron 1 of 9)	intron (NM_020010, intron 1 of 9)	958.0	NM_020010	13121.0	Mm.140158	NM_020010	ENSMUSG00000001467	Cyp51	AI426508|CYPLI|Cyp51a1|Ldm|P450-14DM|P450LI	cytochrome P450, family 51	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91084663-4	chr2	91084173	91085173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12005.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	114.0	239.0	145.5	98.5	236.0	136.0
Merged-chr1-178369469-4	chr1	178368968	178369968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31653.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39536198-2	chr1	39535698	39536698	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028043, exon 1 of 7)	exon (NM_028043, exon 1 of 7)	497.0	NM_028043	52846.0	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86988449-1	chr17	86987949	86988949	+	1000.0	f1_balb.idr	intron (NM_145491, intron 2 of 4)	ID4|SINE|ID	25338.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	5.0	2.0	7.0	7.5	4.0	1.0
Merged-chr19-12016373-4	chr19	12015879	12016879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20361.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4370349-4	chr8	4369848	4370848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20760.0	NM_009138	20300.0	Mm.7275	NM_009138	ENSMUSG00000023235	Ccl25	A130072A22Rik|AI852536|CKb15|Scya25|TECK	chemokine (C-C motif) ligand 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90426457-4	chr7	90425959	90426959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027298, exon 1 of 1)	5' UTR (NM_027298, exon 1 of 1)	147.0	NM_027298	70054.0	Mm.307198	NM_027298	ENSMUSG00000044362	Ccdc89	1700019B01Rik|AU022100|BOIP	coiled-coil domain containing 89	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45272377-4	chr9	45271884	45272884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3235.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87536295-4	chr6	87535785	87536785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3026.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144677676-4	chr3	144677202	144678202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42633.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	35.0	59.0	30.5	66.5	105.0	62.5
Merged-chr16-38394374-4	chr16	38393879	38394879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32189.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-8866889-4	chr13	8866378	8867378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039388, intron 1 of 13)	intron (NM_001039388, intron 1 of 13)	4166.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-16947651-2	chr5	16947151	16948151	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	393750.0	NM_001289461	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47507414-2	chr17	47506914	47507914	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	2363.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76698758-1	chr15	76698258	76699258	+	1000.0	f1_balb.idr	exon (NM_182805, exon 8 of 11)	exon (NM_182805, exon 8 of 11)	2032.0	NM_182805	76282.0	Mm.30130	NM_182805	ENSMUSG00000022546	Gpt	1300007J06Rik|2310022B03Rik|ALT|ALT1|Gpt-1|Gpt1	glutamic pyruvic transaminase, soluble	protein-coding	6.0	13.5	10.0	9.5	7.5	11.5
Merged-chr7-127195018-2	chr7	127194518	127195518	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357817, intron 3 of 6)	intron (NM_001357817, intron 3 of 6)	1059.0	NM_001285907	70233.0	Mm.28050	NM_027353	ENSMUSG00000042502	Cd2bp2	1500011B02Rik|2410024K20Rik|AW048183	CD2 antigen (cytoplasmic tail) binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19077296-1	chr7	19076796	19077796	+	1000.0	f1_balb.idr	intron (NM_010058, intron 1 of 4)	intron (NM_010058, intron 1 of 4)	1096.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	41.5	31.0	20.0	11.5	13.5	7.5
Merged-chr17-71190758-4	chr17	71190157	71191157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	6679.0	NM_022882	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	57.5	116.0	70.5	45.0	113.0	56.5
Merged-chr3-90265110-4	chr3	90264618	90265618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356483)	promoter-TSS (NM_001356483)	-117.0	NM_001356483	229541.0	Mm.30571	NM_201407	ENSMUSG00000042404	Dennd4b	-	DENN/MADD domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65527809-1	chr3	65527309	65528309	+	1000.0	f0_balb.idr	promoter-TSS (NM_178892)	promoter-TSS (NM_178892)	-638.0	NM_178892	99929.0	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding	8.0	32.0	25.5	15.5	33.0	18.0
Merged-chr10-95298620-4	chr10	95298094	95299094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	25115.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	82.5	159.0	149.0	106.5	154.0	127.0
Merged-chr2-73371719-4	chr2	73371223	73372223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276444, intron 4 of 15)	intron (NM_001276444, intron 4 of 15)	14757.0	NM_001276443	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123750975-4	chr4	123750458	123751458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023423)	promoter-TSS (NM_023423)	-659.0	NM_023423	68050.0	Mm.27903	NM_023423	ENSMUSG00000023075	Akirin1	6330407G11Rik	akirin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-76442853-4	chr10	76442357	76443357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282992)	promoter-TSS (NM_001282992)	55.0	NM_008787	18541.0	Mm.251794	NM_008787	ENSMUSG00000001151	Pcnt	AW476095|C86676|KEN|Pcnt2|kendrin|m239Asp|m275Asp	pericentrin (kendrin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101968675-4	chr5	101968180	101969180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 5 of 66)	intron (NM_172882, intron 5 of 66)	101241.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	234.0	533.0	360.0	187.0	451.0	306.0
Merged-chr17-47783691-2	chr17	47783191	47784191	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-2053.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.0	1.5	1.5	0.0	0.0	0.5
Merged-chr7-97480922-4	chr7	97480412	97481412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027256)	promoter-TSS (NM_027256)	-44.0	NM_027256	101861.0	Mm.27383	NM_027256	ENSMUSG00000025133	Ints4	2610034N24Rik|AA692684|AW493223	integrator complex subunit 4	protein-coding	1.0	12.5	6.0	0.0	0.0	5.5
Merged-chr2-164913664-4	chr2	164913167	164914167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1917.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123914794-4	chr4	123914304	123915304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2629.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	8.5	54.0	26.5	9.5	42.5	32.5
Merged-chr10-80017028-3	chr10	80016536	80017536	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347074, exon 1 of 23)	exon (NM_001347074, exon 1 of 23)	121.0	NM_001347074	70719.0	Mm.243954	NM_027521	ENSMUSG00000035697	Arhgap45	6330406L22Rik|AW539505|Ha-1|Hmha1	Rho GTPase activating protein 45	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121642825-2	chr8	121642325	121643325	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080855, intron 1 of 12)	intron (NM_080855, intron 1 of 12)	9108.0	NM_080855	142682.0	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124540680-4	chr5	124540168	124541168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019770)	promoter-TSS (NM_019770)	-123.0	NM_019770	56334.0	Mm.325307	NM_019770	ENSMUSG00000029390	Tmed2	1110032D12Rik|1810020N21Rik|Rnp24|Sid394|p24beta1	transmembrane p24 trafficking protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-55911571-4	chr7	55911060	55912060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 22 of 30)	intron (NM_011370, intron 22 of 30)	50933.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	141.0	262.0	247.5	131.0	281.5	208.0
Merged-chr2-16491545-4	chr2	16491025	16492025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026162, intron 1 of 13)	intron (NM_026162, intron 1 of 13)	135221.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98898198-4	chr10	98897678	98898678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16464.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134094474-4	chr1	134093958	134094958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-15303.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-46929131-2	chr13	46928631	46929631	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010617, intron 2 of 37)	intron (NM_010617, intron 2 of 37)	587.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59485873-4	chr9	59485363	59486363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019927, intron 1 of 13)	CpG	511.0	NM_019927	23806.0	Mm.305925	NM_019927	ENSMUSG00000025234	Arih1	AU021774|Ari|Ari1|Hari|Hhari|Ubch7bp|Uip77	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119863623-4	chr11	119863110	119864110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028898, intron 20 of 33)	intron (NM_028898, intron 20 of 33)	-18679.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164815543-4	chr2	164815048	164816048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178375, intron 1 of 1)	intron (NM_178375, intron 1 of 1)	-7138.0	NM_028028	71971.0	Mm.161149	NM_028028	ENSMUSG00000017764	Zswim1	2410003H12Rik|AI850991|BB046916	zinc finger SWIM-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66060122-4	chr9	66059605	66060605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011149)	promoter-TSS (NM_011149)	-64.0	NM_011149	19035.0	Mm.335249	NM_011149	ENSMUSG00000032383	Ppib	AA408962|AA553318|AI844835|Cphn-2|Cphn2|CyP-20b	peptidylprolyl isomerase B	protein-coding	0.0	5.0	1.0	0.0	0.0	4.5
Merged-chr4-47315641-4	chr4	47315116	47316116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37606.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96395331-4	chr9	96394804	96395804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30873.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	116.0	202.5	196.0	95.0	234.0	201.0
Merged-chr17-69201143-4	chr17	69200645	69201645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	41789.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65931174-4	chr17	65930679	65931679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023053, intron 3 of 4)	intron (NM_023053, intron 3 of 4)	20008.0	NM_023053	65960.0	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	2.5	4.5	0.5	4.0	1.5	1.5
Merged-chr11-117809716-4	chr11	117809210	117810210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009304)	promoter-TSS (NM_009304)	43.0	NM_009304	20973.0	Mm.468228	NM_009304	ENSMUSG00000048277	Syngr2	Clast2|cellugyrin	synaptogyrin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45088790-4	chr13	45088331	45089331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-86735.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99206181-2	chr5	99205681	99206681	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46746.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-32708534-4	chr3	32708038	32709038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019673)	promoter-TSS (NM_019673)	-8.0	NM_019673	56456.0	Mm.41077	NM_019673	ENSMUSG00000027671	Actl6a	2810432C06Rik|AI851094|ARP4|Actl6|Baf53a|C79802	actin-like 6A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-138846218-4	chr7	138845721	138846721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026391)	promoter-TSS (NM_026391)	46.0	NM_001045483	69546.0	Mm.31598	NM_027115	ENSMUSG00000041775	Mapk1ip1	2310009E07Rik|AU043776|MISS	mitogen-activated protein kinase 1 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70513924-2	chr11	70513424	70514424	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013607, intron 2 of 2)	intron (NM_001013607, intron 2 of 2)	692.0	NM_001013607	327956.0	Mm.244514	NM_001013607	ENSMUSG00000020830	Vmo1	Gm741	vitelline membrane outer layer 1 homolog (chicken)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57123299-4	chr16	57122806	57123806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138599, intron 1 of 11)	intron (NM_138599, intron 1 of 11)	1592.0	NM_138599	28185.0	Mm.196933	NM_138599	ENSMUSG00000022752	Tomm70a	2610044B22Rik|D16Ium22|D16Ium22e|D16Wsu109e|Tom70|Tomm70|mKIAA0719	translocase of outer mitochondrial membrane 70A	protein-coding	22.0	15.5	12.0	25.5	17.0	15.0
Merged-chr10-60346829-4	chr10	60346349	60347349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159572)	promoter-TSS (NM_001159572)	-2.0	NM_001159572	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79443230-2	chr15	79442730	79443730	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1087.0	NM_001359863	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	0.0	6.0	1.5	1.5	0.0	1.5
Merged-chr5-54060251-3	chr5	54059754	54060754	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081103, intron 2 of 11)	intron (NM_001081103, intron 2 of 11)	61731.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-101552350-4	chr6	101551848	101552848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-174451.0	NM_018884	55983.0	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144165510-4	chr2	144165020	144166020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	23770.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167860711-4	chr2	167860222	167861222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71605.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3139134-2	chr11	3138624	3139624	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 22 of 32)	MTA_Mm|LTR|ERVL-MaLR	15103.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54578332-4	chr13	54577828	54578828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019968, intron 2 of 3)	intron (NM_019968, intron 2 of 3)	3315.0	NM_019968	56795.0	Mm.89484	NM_019968	ENSMUSG00000025870	Arl10	Arl10a|Arm1	ADP-ribosylation factor-like 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13160468-4	chr16	13159978	13160978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50742.0	NM_015769	50505.0	Mm.287837	NM_015769	ENSMUSG00000022545	Ercc4	AI606920|Xpf	excision repair cross-complementing rodent repair deficiency, complementation group 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76659822-4	chr15	76659332	76660332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358912)	promoter-TSS (NM_001358912)	-26.0	NM_001358910	16581.0	Mm.378950	NM_010630	ENSMUSG00000004187	Kifc2	-	kinesin family member C2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36828371-4	chr16	36827865	36828865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113401)	promoter-TSS (NM_001113401)	-35.0	NM_177128	320299.0	Mm.222934	NM_177128	ENSMUSG00000022837	Iqcb1	6820449I09Rik|AV128382|NPHP5	IQ calmodulin-binding motif containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-157534354-6	chr3	157533846	157534846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152231)	promoter-TSS (NR_152231)	181.0	NM_001355386	53861.0	Mm.259036	NM_017381	ENSMUSG00000028180	Zranb2	AI227013|Zfp265|Zis|Znf265	zinc finger, RAN-binding domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95050104-4	chr4	95049610	95050610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010591, exon 1 of 1)	3' UTR (NM_010591, exon 1 of 1)	2112.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	5.5	3.5	2.0	5.5	3.5	2.0
Merged-chr2-128359773-2	chr2	128359273	128360273	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028590, intron 1 of 2)	intron (NR_028590, intron 1 of 2)	69578.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	2.5	9.5	16.5	5.0	17.0	10.0
Merged-chr7-89248288-4	chr7	89247765	89248765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 4 of 14)	intron (NM_001360746, intron 4 of 14)	90522.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-105777906-4	chr7	105777413	105778413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162943, intron 1 of 20)	intron (NM_001162943, intron 1 of 20)	9637.0	NM_001162943	233651.0	Mm.334108	NM_001162943	ENSMUSG00000036862	Dchs1	3110041P15Rik|C130033F22Rik|CDH25|FIB1|Gm165|PCDH16	dachsous cadherin related 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85703816-4	chr1	85703326	85704326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013673, intron 17 of 19)	intron (NM_013673, intron 17 of 19)	32780.0	NM_177055	319997.0	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128339459-4	chr2	128338952	128339952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028590, intron 1 of 2)	intron (NR_028590, intron 1 of 2)	89899.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	17.5	47.0	42.5	17.0	62.0	50.0
Merged-chr3-100440169-4	chr3	100439679	100440679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13774.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78109867-4	chr9	78109375	78110375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081490)	promoter-TSS (NM_001081490)	683.0	NM_001163780	56542.0	Mm.288719	NM_019987	ENSMUSG00000009828	Ick	2210420N10Rik|AI848300|Mrk	intestinal cell kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121680971-4	chr11	121680437	121681437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7786.0	NM_178664	210004.0	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36018300-4	chr18	36017790	36018790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001167891, exon 10 of 10)	exon (NM_001167891, exon 10 of 10)	53460.0	NR_110349	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-56181164-2	chr3	56180664	56181664	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030595, intron 1 of 57)	intron (NM_030595, intron 1 of 57)	2537.0	NM_030595	26422.0	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30392273-4	chr2	30391779	30392779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290508)	promoter-TSS (NM_001290508)	25.0	NM_001290508	57170.0	Mm.285167	NM_020329	ENSMUSG00000026856	Dolpp1	0610011H20Rik|AB030189|LSFR2	dolichyl pyrophosphate phosphatase 1	protein-coding	0.0	2.0	0.0	3.0	4.5	0.0
Merged-chr14-55528079-2	chr14	55527579	55528579	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3098.0	NM_001271917	18185.0	Mm.20422	NM_008736	ENSMUSG00000040632	Nrl	D14H14S46E	neural retina leucine zipper gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-41017749-4	chr8	41017241	41018241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015457, exon 1 of 3)	non-coding (NR_015457, exon 1 of 3)	273.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	123.0	254.0	156.0	67.5	161.5	89.5
Merged-chr15-53324473-4	chr15	53323979	53324979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	21704.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-181842028-1	chr1	181841528	181842528	+	1000.0	f0_balb.idr	intron (NM_133815, intron 1 of 13)	CpG	373.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87706296-4	chr16	87705792	87706792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	7338.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135876799-4	chr4	135876283	135877283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2937.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36792637-4	chr15	36792115	36793115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253806, intron 1 of 5)	CpG	-1683.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126763770-4	chr8	126763267	126764267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85253.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	4.5	1.5	0.0	0.0	0.0
Merged-chr10-79746638-4	chr10	79746139	79747139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172551)	promoter-TSS (NM_172551)	-58.0	NM_172551	216151.0	Mm.39001	NM_172551	ENSMUSG00000020329	Polrmt	1110018N15Rik|4932416K13	polymerase (RNA) mitochondrial (DNA directed)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-63995715-2	chr7	63995215	63996215	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56800.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160220725-4	chr2	160220217	160221217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106777.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45523972-4	chr7	45523479	45524479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008654, exon 2 of 3)	exon (NM_008654, exon 2 of 3)	2289.0	NM_008654	17872.0	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99906353-4	chr5	99905850	99906850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	72588.0	NM_001077266	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30535164-4	chr7	30534672	30535672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178252)	promoter-TSS (NM_178252)	-112.0	NM_001289682	233071.0	Mm.190704	NM_178252	ENSMUSG00000036882	Arhgap33	AW324378|NOMA-GAP|Snx26|TCGAP	Rho GTPase activating protein 33	protein-coding	0.0	0.0	0.0	2.0	1.0	0.5
Merged-chr14-73381833-4	chr14	73381307	73382307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008410, intron 1 of 5)	intron (NM_008410, intron 1 of 5)	3482.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32251183-4	chr4	32250685	32251685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-166250.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	108.0	235.5	123.5	107.5	208.5	187.5
Merged-chr15-91172371-4	chr15	91171860	91172860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011994, intron 6 of 9)	intron (NM_011994, intron 6 of 9)	19647.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126885739-4	chr8	126885246	126886246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	36726.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	2.5	11.5	10.0	1.0	9.0	5.5
Merged-chr2-167900773-2	chr2	167900273	167901273	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31554.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-30507187-4	chr18	30506673	30507673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	234308.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	16.5	51.5	52.5	34.0	77.0	51.0
Merged-chr10-79908743-4	chr10	79908235	79909235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198107, intron 1 of 14)	CpG	203.0	NM_001163276	216154.0	Mm.260089	NM_198107	ENSMUSG00000013833	Med16	95kDa|A630083L04|DRIP92|Thrap5|Trap95	mediator complex subunit 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64392295-4	chr7	64391782	64392782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026483)	promoter-TSS (NM_026483)	-46.0	NM_026483	67973.0	Mm.26973	NM_026483	ENSMUSG00000030521	Mphosph10	2810453H10Rik|5730405D16Rik|AI326008	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	protein-coding	35.0	69.5	43.0	29.0	75.0	65.0
Merged-chr17-88441547-4	chr17	88441035	88442035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355742, intron 1 of 5)	CpG	831.0	NM_001355742	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	89.0	183.0	183.5	17.5	64.5	39.5
Merged-chr6-38551333-4	chr6	38550825	38551825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138680)	promoter-TSS (NM_138680)	-9.0	NM_138680	192196.0	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145888576-4	chr2	145888075	145889075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028724)	TTS (NM_028724)	-14666.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	78.5	215.5	178.0	71.0	181.5	196.5
Merged-chr10-80682318-2	chr10	80681818	80682818	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6025.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-41068081-4	chr9	41067583	41068583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	MLT1E3|LTR|ERVL-MaLR	11423.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	44.5	39.0	36.5	37.5	43.5	41.0
Merged-chr11-97782459-4	chr11	97781964	97782964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028078)	promoter-TSS (NR_028078)	-25.0	NM_022891	65019.0	Mm.140380	NM_022891	ENSMUSG00000071415	Rpl23	2810009A01Rik	ribosomal protein L23	protein-coding	54.0	138.0	115.0	31.0	134.0	78.5
Merged-chr1-91065086-4	chr1	91064580	91065580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	11636.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101768794-2	chr13	101768294	101769294	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077495)	promoter-TSS (NM_001077495)	-577.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43072486-3	chr17	43071997	43072997	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 4 of 5)	intron (NM_178589, intron 4 of 5)	55942.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	5.0	8.5	5.5	11.5	9.5	6.0
Merged-chr10-80403542-2	chr10	80403042	80404042	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025650, intron 2 of 2)	B3A|SINE|B2	3279.0	NM_025650	66594.0	Mm.379119	NM_025650	ENSMUSG00000020163	Uqcr11	0710008D09Rik|AL022707|Uqcr	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152346464-4	chr3	152345950	152346950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252486)	promoter-TSS (NM_001252486)	-28.0	NM_133247	170822.0	Mm.258320	NM_133247	ENSMUSG00000025437	Usp33	9830169D19Rik|AA409780|Vdu1	ubiquitin specific peptidase 33	protein-coding	29.0	27.5	47.5	20.0	33.5	24.0
Merged-chr7-19359575-4	chr7	19359052	19360052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145822)	promoter-TSS (NM_145822)	-69.0	NM_145822	70333.0	Mm.171370	NM_145822	ENSMUSG00000047649	Cd3eap	1190028F09|2610103M17Rik|ASE-1|Ase1|CAST|PAF49	CD3E antigen, epsilon polypeptide associated protein	protein-coding	4.5	28.5	7.0	2.0	15.0	7.0
Merged-chr2-50690294-4	chr2	50689783	50690783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-219401.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-151861978-4	chr4	151861475	151862475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195565)	promoter-TSS (NM_001195565)	-207.0	NM_001195565	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20348133-4	chr14	20347606	20348606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360365)	promoter-TSS (NM_001360365)	15.0	NM_027475	70601.0	Mm.35105	NM_027475	ENSMUSG00000021810	Ecd	5730461K03Rik|Hsgt1	ecdysoneless cell cycle regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59769874-4	chr13	59769370	59770370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015349)	promoter-TSS (NR_015349)	-81.0	NM_026921	69046.0	Mm.7884	NM_026921	ENSMUSG00000044792	Isca1	1810010A06Rik|Hbld2	iron-sulfur cluster assembly 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103223600-4	chr11	103223096	103224096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 14 of 15)	intron (NM_016896, intron 14 of 15)	-5164.0	NM_177801	328019.0	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56586603-2	chr17	56586103	56587103	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163300, intron 1 of 20)	intron (NM_001163300, intron 1 of 20)	1621.0	NM_001163300	224903.0	Mm.255066	NM_001163300	ENSMUSG00000071054	Safb	3110021E02Rik|5330423C17Rik|AU018122|D18386|E130307D12|HAP|HET|SAF-B1|SAFB1	scaffold attachment factor B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-149842032-4	chr1	149841534	149842534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 16 of 17)	intron (NM_008869, intron 16 of 17)	80405.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124231303-4	chr8	124230809	124231809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139272)	promoter-TSS (NM_139272)	-85.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	26.0	49.0	51.5	13.0	45.5	28.0
Merged-chr9-121317136-4	chr9	121316672	121317672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	19670.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108477786-3	chr6	108477281	108478281	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 46 of 61)	L2c|LINE|L2	-11962.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	3.0	0.0	3.0	6.0	8.5	2.0
Merged-chr11-69995618-4	chr11	69995122	69996122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291125)	promoter-TSS (NM_001291125)	-144.0	NM_001291125	78246.0	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59810980-2	chr4	59810480	59811480	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	B1_Mus2|SINE|Alu	5330.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	0.0	0.0	2.5	1.5	4.0	0.5
Merged-chr12-103341834-4	chr12	103341330	103342330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 2 of 9)	intron (NM_023049, intron 2 of 9)	14171.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127323639-4	chr10	127323120	127324120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359656)	promoter-TSS (NM_001359656)	-87.0	NM_146011	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	40.0	101.5	43.5	15.5	78.5	41.0
Merged-chr11-54954273-4	chr11	54953765	54954765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271456, intron 1 of 18)	intron (NM_001271456, intron 1 of 18)	8675.0	NM_021327	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63556923-4	chr4	63556427	63557427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1836.0	NM_001356355	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69583092-4	chr12	69582585	69583585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033236)	promoter-TSS (NM_001033236)	-57.0	NM_001033236	207965.0	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	7.5	28.5	27.0	29.0	87.5	76.0
Merged-chr1-71938724-4	chr1	71938232	71939232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50620.0	NR_027658	667931.0	Mm.214128	NR_027658	ENSMUSG00000099707	Gm8883	EG667931|Gm554	predicted gene 8883	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132346553-2	chr1	132346053	132347053	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21395.0	NM_001311108	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64379143-4	chr5	64378637	64379637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88805.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	80.0	214.5	135.5	83.5	212.5	142.5
Merged-chr1-72225996-4	chr1	72225514	72226514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-13700.0	NM_001357488	381269.0	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-14443530-3	chr11	14443027	14444027	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR10-int|LTR|ERVK	155698.0	NR_045918	73307.0	Mm.399291	NR_045918	ENSMUSG00000085561	1700046C09Rik	-	RIKEN cDNA 1700046C09 gene	ncRNA	3.0	2.0	1.5	0.0	0.0	0.0
Merged-chr19-10841820-4	chr19	10841316	10842316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023044)	promoter-TSS (NM_023044)	-728.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88622781-4	chr10	88622303	88623303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17651.0	NM_175418	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	21.5	62.0	39.0	24.0	96.0	57.0
Merged-chr13-9472864-4	chr13	9472354	9473354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	196329.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23575748-4	chr13	23575240	23576240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178204)	promoter-TSS (NM_178204)	-23.0	NM_178204	319149.0	Mm.347699	NM_178204	ENSMUSG00000099583	Hist1h3d	H3-b	histone cluster 1, H3d	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160731341-4	chr2	160730904	160731904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021280)	promoter-TSS (NM_021280)	94.0	NM_021280	18803.0	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-74847787-4	chr14	74847277	74848277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 2 of 19)	ORR1D1|LTR|ERVL-MaLR	100100.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65832391-4	chr5	65831879	65832879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31190.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78588631-4	chr9	78588139	78589139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276452)	promoter-TSS (NM_001276452)	-594.0	NM_001276452	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45434686-4	chr7	45434162	45435162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011304)	promoter-TSS (NM_011304)	-177.0	NM_030678	14936.0	Mm.275654	NM_030678	ENSMUSG00000003865	Gys1	Gys3|MGS	glycogen synthase 1, muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76294307-2	chr15	76293807	76294807	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195537)	promoter-TSS (NM_001195537)	-127.0	NM_001195537	100503915.0	Mm.393455	NM_001195537	ENSMUSG00000071724	Smpd5	Gm10345|MA-nSMase	sphingomyelin phosphodiesterase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5649679-4	chr19	5649239	5650239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12249.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	33.5	67.0	85.0	32.0	90.0	65.5
Merged-chr19-24280420-4	chr19	24279886	24280886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008044, intron 1 of 4)	CpG	200.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	10.0	27.0	13.5	6.5	44.5	20.0
Merged-chr1-132318665-4	chr1	132318167	132319167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195025, intron 1 of 7)	intron (NM_001195025, intron 1 of 7)	2542.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-19709161-4	chr4	19708646	19709646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276292)	promoter-TSS (NM_001276292)	-142.0	NR_074090	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	83.0	128.0	88.5	54.5	105.0	87.5
Merged-chr8-67813793-4	chr8	67813283	67814283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177698, intron 8 of 14)	intron (NM_177698, intron 8 of 14)	4512.0	NM_027626	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31057988-9	chr17	31057475	31058475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 1 of 14)	CpG	281.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0.5	4.5	0.5	0.0	2.0	2.0
Merged-chr7-141435296-4	chr7	141434799	141435799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177576)	promoter-TSS (NM_001177576)	76.0	NM_001360723	68267.0	Mm.33729	NM_026646	ENSMUSG00000019082	Slc25a22	1300006L01Rik|AI060884|Gc1	solute carrier family 25 (mitochondrial carrier, glutamate), member 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167271314-4	chr2	167270824	167271824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30787.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8674583-4	chr12	8674127	8675127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030723)	promoter-TSS (NM_030723)	-54.0	NM_030723	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111797208-4	chr13	111796698	111797698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	11795.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	55.5	125.5	97.5	53.5	140.0	90.5
Merged-chr2-140395338-4	chr2	140394826	140395826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013802)	promoter-TSS (NM_001013802)	-104.0	NM_001013802	72899.0	Mm.229466	NM_028387	ENSMUSG00000068205	Macrod2	1110033L15Rik|2610107G07Rik|2900006F19Rik	MACRO domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84219426-4	chr12	84218923	84219923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163501)	promoter-TSS (NM_001163501)	-542.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126695863-4	chr7	126695366	126696366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029420)	promoter-TSS (NM_029420)	-83.0	NR_033446	75764.0	Mm.280573	NM_029420	ENSMUSG00000059772	Slx1b	1110030E23Rik|2410170E21Rik|4833422P03Rik|AI853643|Giyd1|Giyd2	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88866408-2	chr15	88865908	88866908	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145478)	TTS (NM_145478)	4214.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25022286-4	chr2	25021793	25022793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146251, intron 20 of 34)	intron (NM_146251, intron 20 of 34)	-32086.0	NM_001177654	56876.0	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-36213834-2	chr2	36213334	36214334	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16592.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46138358-4	chr8	46137773	46138773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14127.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127393744-4	chr7	127393259	127394259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198011)	promoter-TSS (NM_198011)	-138.0	NM_198011	101604.0	Mm.334241	NM_198011	ENSMUSG00000078580	E430018J23Rik	AI480612	RIKEN cDNA E430018J23 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-167331326-4	chr1	167330832	167331832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001039483, exon 7 of 7)	3' UTR (NM_001039483, exon 7 of 7)	-18659.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127737183-4	chr10	127736678	127737678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2360.0	NM_198035	320080.0	Mm.27258	NM_198035	ENSMUSG00000044617	Zbtb39	7030401O21Rik|mKIAA0352	zinc finger and BTB domain containing 39	protein-coding	50.0	82.0	79.5	30.5	49.0	56.0
Merged-chr17-45682776-2	chr17	45682276	45683276	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198167, intron 1 of 23)	intron (NM_198167, intron 1 of 23)	3442.0	NM_198167	224807.0	Mm.157904	NM_198167	ENSMUSG00000036026	Tmem63b	BC026370	transmembrane protein 63b	protein-coding	0.0	0.0	6.0	0.0	0.0	0.0
Merged-chr2-144220784-2	chr2	144220284	144221284	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31494.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118150158-4	chr9	118149658	118150658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026442)	promoter-TSS (NM_026442)	38.0	NM_026442	67899.0	Mm.9953	NM_026442	ENSMUSG00000039163	Cmc1	2010110K16Rik|2010312P05Rik|AI596001	COX assembly mitochondrial protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-83417665-4	chr4	83417158	83418158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152448)	promoter-TSS (NR_152448)	-66.0	NR_152449	77634.0	Mm.271985	NM_029949	ENSMUSG00000028483	Snapc3	1810020H02Rik|4930558A07Rik|5031401C21Rik|AI414457|E030018J20Rik	small nuclear RNA activating complex, polypeptide 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-14144544-1	chr10	14144044	14145044	+	1000.0	f1_balb.idr	intron (NM_001358782, intron 9 of 9)	intron (NM_001358782, intron 9 of 9)	178165.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	7.5	10.0	7.0	0.5	10.0	9.0
Merged-chr7-122206332-4	chr7	122205839	122206839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13157.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170153819-4	chr2	170153326	170154326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11151.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	2.5	52.0	40.0	28.5	30.0	29.0
Merged-chr12-65036397-4	chr12	65035936	65036936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177806, exon 1 of 14)	5' UTR (NM_177806, exon 1 of 14)	102.0	NM_177806	328110.0	Mm.283339	NM_177806	ENSMUSG00000035597	Prpf39	Srcs1	pre-mRNA processing factor 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-105736515-4	chr7	105735995	105736995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025897)	promoter-TSS (NM_025897)	89.0	NM_025897	101867.0	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-44234655-4	chr4	44234169	44235169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13402.0	NR_039565	100628618.0		NR_039565	ENSMUSG00000092677	Mir5106	mir-5106|mmu-mir-5106|mu-mir-5106	microRNA 5106	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-174437879-4	chr2	174437384	174438384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022325, intron 2 of 5)	intron (NM_022325, intron 2 of 5)	1155.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67830739-2	chr5	67830239	67831239	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	AT_rich|Low_complexity|Low_complexity	16692.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67703279-4	chr10	67702789	67703789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-131330.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99498139-4	chr15	99497628	99498628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028224, exon 12 of 12)	3' UTR (NM_028224, exon 12 of 12)	-23398.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	3.0	2.0	9.0	1.0	4.5	6.0
Merged-chr17-34882110-2	chr17	34881610	34882610	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013484)	promoter-TSS (NM_013484)	-10.0	NM_013484	12263.0	Mm.283217	NM_013484	ENSMUSG00000024371	C2	-	complement component 2 (within H-2S)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-73770785-4	chr16	73770277	73771277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G1|LTR|ERVL-MaLR	571290.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138171996-4	chr5	138171499	138172499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021392)	promoter-TSS (NM_021392)	-22.0	NM_021392	11781.0	Mm.113205	NM_021392	ENSMUSG00000019518	Ap4m1	4930443L05Rik|Ap4m4	adaptor-related protein complex AP-4, mu 1	protein-coding	3.0	0.0	2.5	3.0	0.0	2.0
Merged-chr9-99185987-2	chr9	99185487	99186487	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45776.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62675895-4	chr11	62675380	62676380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27216.0	NM_175002	216829.0	Mm.295306	NM_175002	ENSMUSG00000048497	Mmgt2	AI852046	membrane magnesium transporter 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-46930515-4	chr13	46930011	46931011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010617)	promoter-TSS (NM_010617)	-793.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	4.0	19.5	3.5	0.5	5.5	6.0
Merged-chr5-140508861-4	chr5	140508359	140509359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021528, intron 1 of 1)	intron (NM_021528, intron 1 of 1)	3250.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-19777618-4	chr14	19777119	19778119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008695, intron 4 of 20)	intron (NM_008695, intron 4 of 20)	26362.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-167246469-4	chr1	167245984	167246984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030724, intron 1 of 6)	L1M4|LINE|L1	38643.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-72835273-2	chr17	72834773	72835773	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1355.0	NM_027166	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	22.5	30.5	49.5	22.5	31.0	49.5
Merged-chr3-142620652-4	chr3	142620141	142621141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010260)	promoter-TSS (NM_010260)	-22.0	NM_010260	14469.0	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-93955917-4	chr11	93955374	93956374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077529)	promoter-TSS (NM_001077529)	-91.0	NM_001077529	18103.0	Mm.1260	NM_008705	ENSMUSG00000020857	Nme2	NM23-H2|NM23B|nm23-M2	NME/NM23 nucleoside diphosphate kinase 2	protein-coding	16.0	50.0	50.5	13.5	64.0	60.5
Merged-chr19-47440234-4	chr19	47439722	47440722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	24189.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	47.0	108.5	115.0	31.5	34.5	43.0
Merged-chr5-85915199-4	chr5	85914674	85915674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150409.0	NM_001345902	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	1.0	3.0	3.5	9.5	10.5	8.0
Merged-chr6-123229822-4	chr6	123229318	123230318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020001)	promoter-TSS (NM_020001)	-25.0	NM_001190320	56620.0	Mm.271782	NM_020001	ENSMUSG00000023349	Clec4n	Clec6a|Clecsf10|Nkcl	C-type lectin domain family 4, member n	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180313077-4	chr1	180312572	180313572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17404.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-160212976-4	chr1	160212488	160213488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009786)	promoter-TSS (NM_009786)	-96.0	NM_009786	12301.0	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	145.0	270.5	233.0	122.5	385.0	238.0
Merged-chr10-98776840-4	chr10	98776363	98777363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-137779.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5771077-4	chr2	5770569	5771569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56307.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0.0	9.5	1.5	3.5	6.5	8.0
Merged-chr14-74946837-4	chr14	74946319	74947319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	1058.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83009743-4	chr15	83009225	83010225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028728, intron 4 of 5)	intron (NM_028728, intron 4 of 5)	13413.0	NM_028728	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	20.0	27.0	35.5	21.0	44.0	39.5
Merged-chr5-3300930-4	chr5	3300425	3301425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42968.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108490691-4	chr9	108490171	108491171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168371)	promoter-TSS (NM_001168371)	-5.0	NM_001168372	71472.0	Mm.289706	NM_027804	ENSMUSG00000006676	Usp19	8430421I07Rik|AI047774|Zmynd9	ubiquitin specific peptidase 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-142699490-4	chr2	142698984	142699984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 23 of 26)	intron (NM_001355123, intron 23 of 26)	201980.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119476983-7	chr2	119476476	119477476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026574, intron 1 of 35)	CpG	653.0	NM_026574	68142.0	Mm.330496	NM_026574	ENSMUSG00000034154	Ino80	2310079N15Rik|4632409L19Rik|Inoc1	INO80 complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17865373-4	chr17	17864875	17865875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10187.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	88.5	157.5	72.0	69.5	155.5	81.5
Merged-chr10-19009566-4	chr10	19009065	19010065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166402, intron 1 of 7)	intron (NM_001166402, intron 1 of 7)	2398.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	17.0	59.0	41.0	19.0	60.5	46.5
Merged-chr10-79766700-2	chr10	79766200	79767200	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027505, intron 1 of 7)	CpG	252.0	NM_144528	70294.0	Mm.466670	NM_144528	ENSMUSG00000035890	Rnf126	2610010O19Rik	ring finger protein 126	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6304010-4	chr15	6303511	6304511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	4222.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71300078-4	chr17	71299571	71300571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	10940.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	6.0	6.5	9.0	11.5	7.5	11.0
Merged-chr16-57246769-4	chr16	57246264	57247264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15298.0	NM_001358433	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	1.0	8.5	4.0	0.0	10.0	6.0
Merged-chr4-53124853-4	chr4	53124344	53125344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	L3|LINE|CR1	35051.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71286488-4	chr8	71285990	71286990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 1 of 39)	intron (NM_001142322, intron 1 of 39)	13776.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	42.5	78.5	33.5	40.0	84.5	51.0
Merged-chr13-34667402-4	chr13	34666901	34667901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_105041)	TTS (NR_105041)	14478.0	NR_105041	101056149.0	Mm.421309	NR_105041	ENSMUSG00000086786	Gm15908	-	predicted gene 15908	ncRNA	2.5	14.0	5.5	8.5	22.5	9.5
Merged-chr8-119828285-2	chr8	119827785	119828785	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	(A)n|Simple_repeat|Simple_repeat	12294.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134228581-2	chr5	134228081	134229081	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010876, intron 1 of 10)	intron (NM_010876, intron 1 of 10)	1044.0	NM_001286037	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-112696671-4	chr6	112696165	112697165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021385)	promoter-TSS (NM_021385)	5.0	NM_021385	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-3232757-4	chr15	3232258	3233258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38009.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106794498-2	chr11	106793998	106794998	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166685, intron 3 of 18)	PB1D9|SINE|Alu	5246.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140749740-4	chr5	140749239	140750239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 7 of 7)	intron (NM_173405, intron 7 of 7)	25612.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-80081493-7	chr2	80080958	80081958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	MER31A|LTR|ERV1	-42556.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	15.0	60.0	18.5	6.5	30.0	14.5
Merged-chr2-180040520-4	chr2	180040022	180041022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011969, intron 1 of 6)	intron (NM_011969, intron 1 of 6)	1942.0	NM_001289476	26444.0	Mm.21728	NM_011969	ENSMUSG00000027566	Psma7	C6-I	proteasome (prosome, macropain) subunit, alpha type 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97456433-4	chr6	97455927	97456927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	2859.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	123.5	305.0	175.5	90.5	166.0	116.5
Merged-chr4-48279688-4	chr4	48279224	48280224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010569)	promoter-TSS (NM_010569)	-36.0	NM_010569	16348.0	Mm.317706	NM_010569	ENSMUSG00000028344	Invs	Nphp2|inv	inversin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69420364-4	chr11	69419872	69420872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081330)	TTS (NM_001081330)	-6697.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	1.5	8.0	4.0	0.0	0.0	0.5
Merged-chr9-88858970-4	chr9	88858466	88859466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037982)	promoter-TSS (NR_037982)	-96.0	NR_037983	319673.0	Mm.149040	NR_037982	ENSMUSG00000097177	9330159M07Rik	1700096K11Rik|mU50hg-a	RIKEN cDNA 9330159M07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69395007-2	chr11	69394507	69395507	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030083)	promoter-TSS (NM_030083)	339.0	NM_001045525	327951.0	Mm.415669	NM_001045525	ENSMUSG00000044795	Cyb5d1	Gm740	cytochrome b5 domain containing 1	protein-coding	38.0	56.0	43.5	32.0	93.0	56.0
Merged-chr1-156418415-2	chr1	156417915	156418915	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346967, intron 3 of 25)	intron (NM_001346967, intron 3 of 25)	2500.0	NM_001346967	77352.0	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	0.5	1.5	0.5	0.0	2.5	1.0
Merged-chr5-105519277-4	chr5	105518783	105519783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133897)	promoter-TSS (NM_133897)	-188.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96631372-5	chr15	96630894	96631894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166458, intron 1 of 15)	L1M2|LINE|L1	10568.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163761601-4	chr2	163761087	163762087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11348.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	62.0	113.5	88.0	89.0	201.0	206.0
Merged-chr8-120564035-4	chr8	120563546	120564546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 3 of 15)	intron (NM_001145896, intron 3 of 15)	25029.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	28.5	94.5	70.0	56.0	112.5	77.0
Merged-chr9-105396295-1	chr9	105395795	105396795	+	1000.0	f1_balb.idr	intron (NR_152139, intron 1 of 5)	intron (NR_152139, intron 1 of 5)	933.0	NR_152139	66595.0	Mm.84941	NM_025651	ENSMUSG00000032567	Aste1	1100001A21Rik|AV006403	asteroid homolog 1	protein-coding	80.5	223.5	209.5	87.0	226.5	182.5
Merged-chr4-70535048-4	chr4	70534548	70535548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172694)	promoter-TSS (NM_172694)	-120.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-136891116-3	chr2	136890656	136891656	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028201)	promoter-TSS (NM_028201)	-62.0	NM_028201	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-29947933-4	chr16	29947445	29948445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31179.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115535842-4	chr5	115535338	115536338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	-23629.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	50.5	204.5	106.0	48.0	196.0	113.5
Merged-chr13-98316854-6	chr13	98316282	98317282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_137279)	promoter-TSS (NR_137279)	185.0	NM_145455	218490.0	Mm.371688	NM_145455	ENSMUSG00000021660	Btf3	1700054E11Rik	basic transcription factor 3	protein-coding	25.0	37.0	35.5	26.5	40.5	48.0
Merged-chr15-28374608-4	chr15	28374122	28375122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133365, intron 52 of 78)	intron (NM_133365, intron 52 of 78)	170856.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-83575571-4	chr9	83575063	83576063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	MLT1A0|LTR|ERVL-MaLR	27225.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	13.5	20.0	65.5	13.5	60.0	34.5
Merged-chr15-95823813-2	chr15	95823313	95824313	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_155276)	TTS (NR_155276)	6259.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8519632-4	chr12	8519103	8520103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19594.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	52.5	78.0	79.0	60.0	85.5	88.0
Merged-chr15-88821704-2	chr15	88821204	88822204	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029720, intron 4 of 9)	intron (NM_029720, intron 4 of 9)	2058.0	NM_029720	76737.0	Mm.292567	NM_029720	ENSMUSG00000023272	Creld2	5730592L21Rik|C85758	cysteine-rich with EGF-like domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80293001-2	chr10	80292501	80293501	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009091, intron 2 of 3)	B1_Mus1|SINE|Alu	492.0	NM_001310726	20054.0	Mm.643	NM_009091	ENSMUSG00000063457	Rps15	rig	ribosomal protein S15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80621474-2	chr10	80620974	80621974	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1306.0	NM_134002	103236.0	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-43394147-2	chr11	43393647	43394647	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19686.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	1.0	0.0	0.0	1.0	0.0	0.0
Merged-chr16-38758693-4	chr16	38758188	38759188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152434, intron 4 of 6)	intron (NR_152434, intron 4 of 6)	16429.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68657122-4	chr11	68656610	68657610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34805.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-7171293-4	chr7	7170795	7171795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146179)	promoter-TSS (NM_146179)	-58.0	NM_146179	232854.0	Mm.184857	NM_146179	ENSMUSG00000034538	Zfp418	A230102I05Rik	zinc finger protein 418	protein-coding	6.0	0.0	11.0	5.0	3.5	6.0
Merged-chr7-100607533-4	chr7	100607033	100608033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163663)	promoter-TSS (NM_001163663)	-53.0	NM_024287	19346.0	Mm.28650	NM_024287	ENSMUSG00000030704	Rab6a	2610028L11Rik|AA419671|Rab6	RAB6A, member RAS oncogene family	protein-coding	20.0	35.5	38.5	15.0	50.5	31.0
Merged-chr13-9180463-4	chr13	9179944	9180944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	86563.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-35130816-4	chr4	35130332	35131332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-21223.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35703118-4	chr18	35702625	35703625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029669)	promoter-TSS (NM_029669)	19.0	NM_029669	76594.0	Mm.108596	NM_029669	ENSMUSG00000024350	Dnajc18	2700075B01Rik|AU041129	DnaJ heat shock protein family (Hsp40) member C18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-77423053-4	chr8	77422556	77423556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 5 of 22)	intron (NM_030113, intron 5 of 22)	-94000.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70465968-2	chr11	70465468	70466468	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001348337, exon 14 of 14)	exon (NM_001348337, exon 14 of 14)	-5984.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	3.0	9.0	4.0	0.0	0.0	0.0
Merged-chr2-32452113-4	chr2	32451606	32452606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164357)	promoter-TSS (NM_001164357)	-636.0	NM_146118	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137745927-4	chr5	137745418	137746418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029805)	promoter-TSS (NM_029805)	-51.0	NM_023910	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-40745298-4	chr3	40744802	40745802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011020)	promoter-TSS (NM_011020)	-311.0	NM_011020	18415.0	Mm.39330	NM_011020	ENSMUSG00000025757	Hspa4l	94kDa|AI461691|APG-1|Osp94	heat shock protein 4 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-33185303-2	chr15	33184803	33185803	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018755, intron 2 of 8)	intron (NM_018755, intron 2 of 8)	102174.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138261689-4	chr1	138261154	138262154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12084.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-97580418-4	chr1	97579902	97580902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	81274.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84257284-4	chr8	84256808	84257808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026423)	promoter-TSS (NM_026423)	16.0	NM_026423	67873.0	Mm.278085	NM_026423	ENSMUSG00000004996	Mri1	2410018C20Rik	methylthioribose-1-phosphate isomerase 1	protein-coding	26.5	32.5	26.0	3.5	12.5	12.0
Merged-chr13-45903797-4	chr13	45903317	45904317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	61174.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17887940-4	chr17	17887412	17888412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008039)	promoter-TSS (NM_008039)	88.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	24.0	81.0	68.0	40.5	89.5	58.5
Merged-chr4-59862190-3	chr4	59861701	59862701	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 2 of 8)	intron (NM_172468, intron 2 of 8)	52855.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	12.0	14.5	11.5	7.0	13.0	6.0
Merged-chr8-104250892-4	chr8	104250381	104251381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286383)	promoter-TSS (NM_001286383)	20.0	NM_001286383	75458.0	Mm.269219	NM_029295	ENSMUSG00000054400	Cklf	1700001C14Rik|1810018M11Rik|A730028G07Rik|C32|CKLF1|CKLF3|CKLF4|CKLF5|Cklf2|Cklf6|HSPC224|UCK-1	chemokine-like factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115474129-2	chr11	115473629	115474629	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001080934, exon 4 of 4)	3' UTR (NM_001080934, exon 4 of 4)	-1538.0	NM_177778	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122067148-4	chr7	122066673	122067673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138589)	promoter-TSS (NM_138589)	-25.0	NM_138589	28018.0	Mm.282122	NM_138589	ENSMUSG00000030870	Ubfd1	AI467302|D7Wsu105e|D7Wsu128e|Ubph	ubiquitin family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-68252988-4	chr18	68252497	68253497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357444, intron 3 of 3)	intron (NM_001357444, intron 3 of 3)	7976.0	NR_106078	102465702.0		NR_106078	ENSMUSG00000098253	Mir7219	Gm27613|mmu-mir-7219	microRNA 7219	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-36812573-4	chr8	36812059	36813059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 4 of 17)	intron (NM_001194940, intron 4 of 17)	-79505.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	42.0	48.0	40.5	27.0	33.5	32.5
Merged-chr5-123375448-2	chr5	123374948	123375948	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-19350.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84059459-4	chr2	84058949	84059949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118223.0	NM_027964	71861.0	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-35171694-2	chr6	35171194	35172194	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-5922.0	NM_027513	70699.0	Mm.261208	NM_027513	ENSMUSG00000038759	Nup205	3830404O05Rik|AV248391|mKIAA0225	nucleoporin 205	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49970674-4	chr16	49970177	49971177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9783.0	NR_045001	628951.0	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32558291-4	chr11	32557770	32558770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	MER5A|DNA|hAT-Charlie	25004.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	33.5	134.0	97.5	38.0	159.0	98.5
Merged-chr7-3694265-4	chr7	3693788	3694788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029934)	promoter-TSS (NM_029934)	-220.0	NM_024168	66078.0	Mm.379100	NM_024168	ENSMUSG00000035585	Tsen34	0610027F08Rik|Leng5	tRNA splicing endonuclease subunit 34	protein-coding	13.0	30.0	25.5	0.5	21.5	12.5
Merged-chr14-101609247-4	chr14	101608742	101609742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081278)	promoter-TSS (NM_001081278)	-51.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84774819-4	chr10	84774316	84775316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024918, intron 1 of 17)	intron (NM_001024918, intron 1 of 17)	18768.0	NM_001024918	71137.0	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116679782-4	chr6	116679297	116680297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5961.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-36381946-7	chr12	36381408	36382408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289503)	promoter-TSS (NM_001289503)	-239.0	NM_001289503	75847.0	Mm.261764	NM_178629	ENSMUSG00000043153	Ispd	4930579E17Rik|AV040780	isoprenoid synthase domain containing	protein-coding	8.0	69.5	39.0	34.0	71.0	51.0
Merged-chr15-12008289-4	chr15	12007760	12008760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-12253.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46474900-4	chr18	46474409	46475409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa-int|LTR|ERVL-MaLR	-9093.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107975434-4	chr9	107974915	107975915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023738)	promoter-TSS (NM_023738)	-152.0	NM_023738	74153.0	Mm.277125	NM_023738	ENSMUSG00000032596	Uba7	1300004C08Rik|Ube1l	ubiquitin-like modifier activating enzyme 7	protein-coding	18.0	29.5	16.5	5.5	39.5	14.0
Merged-chr11-115765387-4	chr11	115764895	115765895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028014)	promoter-TSS (NM_028014)	-38.0	NM_028014	71947.0	Mm.23168	NM_028014	ENSMUSG00000020747	Tmem94	2310067B10Rik|Kiaa0195|mKIAA0195	transmembrane protein 94	protein-coding	23.5	27.0	27.0	6.5	35.5	17.0
Merged-chr13-42829102-4	chr13	42828565	42829565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005740, intron 1 of 12)	intron (NM_001005740, intron 1 of 12)	-37182.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114268919-4	chr6	114268430	114269430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13705.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101108456-4	chr7	101107958	101108958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146010)	promoter-TSS (NM_001146010)	-317.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	15.0	26.5	14.0	12.5	13.5	12.5
Merged-chr19-24995042-4	chr19	24994530	24995530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4499.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	51.0	106.5	55.0	33.5	17.0	23.0
Merged-chr17-35236489-4	chr17	35235992	35236992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023179)	promoter-TSS (NM_023179)	-104.0	NM_023179	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	35.5	145.0	90.0	33.0	105.0	82.0
Merged-chr13-60683493-4	chr13	60682940	60683940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	81229.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	39.5	65.0	50.0	51.0	113.0	43.0
Merged-chr10-111986630-4	chr10	111986142	111987142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028608, exon 4 of 6)	exon (NM_028608, exon 4 of 6)	10622.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116712238-4	chr3	116711733	116712733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362374)	promoter-TSS (NM_001362374)	47.0	NM_144902	229782.0	Mm.190758	NM_144902	ENSMUSG00000027957	Slc35a3	2310050P13Rik	solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3	protein-coding	5.0	1.0	0.0	0.0	1.5	6.5
Merged-chr15-6390872-4	chr15	6390325	6391325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	4077.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120174217-2	chr14	120173717	120174717	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	-101452.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-100644234-4	chr9	100643731	100644731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009282, intron 1 of 33)	CpG	783.0	NM_001357265	20842.0	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	120.0	260.5	150.5	112.0	290.0	184.0
Merged-chr13-113616628-7	chr13	113616049	113617049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	2015.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50470636-4	chr17	50470123	50471123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38924.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	46.0	93.0	65.0	48.0	101.0	67.0
Merged-chr1-138079635-2	chr1	138079135	138080135	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 21 of 28)	intron (NM_001268286, intron 21 of 28)	95491.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92486254-2	chr5	92485754	92486754	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	19403.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137830393-4	chr5	137829884	137830884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153510, intron 3 of 6)	intron (NM_153510, intron 3 of 6)	5894.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120659119-2	chr11	120658619	120659619	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175263, intron 2 of 11)	intron (NM_175263, intron 2 of 11)	1718.0	NM_175263	77583.0	Mm.32839	NM_175263	ENSMUSG00000042988	Notum	5730593N15Rik	notum palmitoleoyl-protein carboxylesterase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-52113810-4	chr1	52113234	52114234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5704.0	NM_001357627	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55789113-4	chr16	55788616	55789616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33022.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50025322-4	chr17	50024858	50025858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 7 of 9)	intron (NM_181397, intron 7 of 9)	165139.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	28.5	80.0	85.5	41.5	95.5	114.0
Merged-chr5-24451789-4	chr5	24451295	24452295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139153)	promoter-TSS (NM_139153)	-382.0	NM_001359881	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122964525-4	chr3	122964036	122965036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133857, intron 2 of 15)	intron (NM_133857, intron 2 of 15)	19911.0	NM_133857	99526.0	Mm.491248	NM_133857	ENSMUSG00000039701	Usp53	AA939927|Phxr3|Sp6|mKIAA1350|mbo	ubiquitin specific peptidase 53	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87650715-4	chr1	87650261	87651261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	30449.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-24965047-4	chr6	24964513	24965513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CTG)n|Simple_repeat|Simple_repeat	-8888.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-37037645-3	chr8	37037157	37038157	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13419.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	8.5	13.5	4.0	20.0	26.5	43.0
Merged-chr9-83555804-4	chr9	83555316	83556316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	7478.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	8.0	33.5	24.0	16.0	8.0	13.5
Merged-chr13-101905889-4	chr13	101905385	101906385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137668.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184441397-4	chr1	184440904	184441904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116287.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102210364-4	chr7	102209945	102210945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022979)	promoter-TSS (NM_022979)	110.0	NM_001291358	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	14.5	141.0	57.0	41.0	97.5	58.5
Merged-chr17-3156354-4	chr17	3155857	3156857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134123, intron 3 of 19)	intron (NM_134123, intron 3 of 19)	41385.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36477122-4	chr16	36476638	36477638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21746.0	NM_025288	20863.0	Mm.136573	NM_025288	ENSMUSG00000054905	Stfa3	Stf3	stefin A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181536598-4	chr2	181536088	181537088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271584, intron 2 of 5)	MYSERV6-int|LTR|ERVK	16103.0	NM_001271584	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121824317-4	chr5	121823821	121824821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001306126, intron 3 of 8)	intron (NM_001306126, intron 3 of 8)	-5048.0	NR_105998	102465624.0		NR_105998	ENSMUSG00000099063	Mir7031	Gm27859|mmu-mir-7031	microRNA 7031	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-139042681-4	chr3	139042185	139043185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 2 of 13)	intron (NM_001356388, intron 2 of 13)	32516.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	22.5	80.5	59.0	12.0	76.5	53.5
Merged-chr9-116102068-4	chr9	116101571	116102571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 5 of 6)	intron (NM_029575, intron 5 of 6)	73292.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	35.0	54.0	50.5	29.0	51.0	30.5
Merged-chr11-75451922-2	chr11	75451422	75452422	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_138950, exon 1 of 10)	exon (NM_138950, exon 1 of 10)	2795.0	NM_138950	192652.0	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129592095-4	chr2	129591596	129592596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291020)	promoter-TSS (NM_001291020)	-743.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	170.5	356.5	233.0	160.5	386.5	236.5
Merged-chr18-69290131-3	chr18	69289634	69290634	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-54358.0	NM_013685	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	3.0	0.5	1.0	2.5	2.5	7.0
Merged-chr4-33031403-4	chr4	33030908	33031908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_036602)	promoter-TSS (NR_036602)	28.0	NM_001355494	56228.0	Mm.259095	NM_019586	ENSMUSG00000028277	Ube2j1	0710008M05Rik|1110030I22Rik|NCUBE-1|Ncube|Ncube1|Ubc6p	ubiquitin-conjugating enzyme E2J 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59662452-4	chr11	59661970	59662970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012027)	promoter-TSS (NM_012027)	-25.0	NM_201245	26936.0	Mm.2402	NM_012027	ENSMUSG00000005417	Mprip	9530046C02|AA536749|AI647711|C76423|Gm34094|RIP3|Rhoip3|mKIAA0864|p116Rip	myosin phosphatase Rho interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79636192-4	chr2	79635697	79636697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080558, intron 2 of 17)	CpG-8223	772.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	115.5	173.5	164.5	68.0	150.5	153.0
Merged-chr8-70792498-4	chr8	70791994	70792994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199308)	promoter-TSS (NM_199308)	-61.0	NM_199308	546071.0	Mm.250731	NM_199308	ENSMUSG00000031833	Mast3	BC024265|mKIAA0561	microtubule associated serine/threonine kinase 3	protein-coding	44.0	85.5	67.0	12.5	63.0	55.5
Merged-chr19-44930987-4	chr19	44930498	44931498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081225)	promoter-TSS (NM_001081225)	-121.0	NM_172638	226151.0	Mm.212609	NM_172638	ENSMUSG00000036097	Slf2	3632432H19|Fam178a	SMC5-SMC6 complex localization factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44063330-4	chr16	44062797	44063797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-21289.0	NM_001359085	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65346113-4	chr9	65345605	65346605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016688)	promoter-TSS (NM_016688)	37.0	NM_016688	50996.0	Mm.29193	NM_016688	ENSMUSG00000041837	Pdcd7	C80112|ES18	programmed cell death 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124125066-2	chr5	124124566	124125566	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289472, intron 16 of 24)	intron (NM_001289472, intron 16 of 24)	8958.0	NM_144509	65105.0	Mm.29430	NM_144509	ENSMUSG00000029404	Arl6ip4	AA408210|AA408365|Aip-4|Srp25	ADP-ribosylation factor-like 6 interacting protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88008865-3	chr6	88008345	88009345	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009005, intron 3 of 5)	intron (NM_009005, intron 3 of 5)	10950.0	NM_001293655	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65679470-4	chr18	65678881	65679881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361052, intron 6 of 8)	Tigger7|DNA|TcMar-Tigger	-18887.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	51.0	126.5	126.0	89.5	262.0	187.5
Merged-chr4-48196549-4	chr4	48196051	48197051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355184, intron 10 of 10)	intron (NM_001355184, intron 10 of 10)	16664.0	NR_035484	100316708.0		NR_035484	ENSMUSG00000087844	Mir1958	mmu-mir-1958	microRNA 1958	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-142098006-4	chr4	142097498	142098498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13694.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	41.0	138.5	120.0	73.0	141.5	156.0
Merged-chr3-98031386-4	chr3	98030929	98031929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	17891.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85260273-1	chr1	85259773	85260773	+	1000.0	f1_balb.idr	intron (NM_175219, intron 2 of 7)	intron (NM_175219, intron 2 of 7)	10293.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116674410-1	chr6	116673910	116674910	+	1000.0	f0_c57.idr	promoter-TSS (NM_178045)	promoter-TSS (NM_178045)	-574.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44731205-4	chr13	44730712	44731712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360281)	promoter-TSS (NM_001360281)	-59.0	NM_001360281	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	14.5	10.0	24.5	28.5	38.0	28.5
Merged-chr17-27083809-3	chr17	27083306	27084306	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080553, intron 3 of 57)	intron (NM_080553, intron 3 of 57)	-7439.0	NR_106142	102465779.0		NR_106142	ENSMUSG00000098826	Mir7677	Gm27400|mmu-mir-7677	microRNA 7677	ncRNA	5.0	8.5	6.0	5.0	3.5	14.5
Merged-chr15-101246999-3	chr15	101246508	101247508	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19838.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	63.0	102.5	65.0	33.5	142.0	93.5
Merged-chr12-110992336-4	chr12	110991851	110992851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2047.0	NR_036598	77878.0	Mm.293198	NR_036598	ENSMUSG00000113056	6030440G07Rik	-	RIKEN cDNA 6030440G07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-132035403-4	chr3	132034970	132035970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49822.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	24.5	28.5	26.5	20.5	43.0	9.0
Merged-chr10-41490406-4	chr10	41489908	41490908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009213)	promoter-TSS (NM_009213)	-31.0	NM_028430	73075.0	Mm.359762	NM_028430	ENSMUSG00000078451	Ppil6	2900084F20Rik	peptidylprolyl isomerase (cyclophilin)-like 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129558745-4	chr2	129558266	129559266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-22164.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	2.5	6.0	14.0	12.5	15.5	1.5
Merged-chr15-95850744-4	chr15	95850229	95851229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253813, intron 2 of 20)	L1MB3|LINE|L1	-20657.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-17027021-4	chr7	17026523	17027523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011155, intron 1 of 12)	L2b|LINE|L2	891.0	NM_011155	19060.0	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	12.5	67.5	55.0	23.5	72.0	43.0
Merged-chr1-21070242-4	chr1	21069746	21070746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177409, intron 1 of 10)	intron (NM_177409, intron 1 of 10)	8979.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	0.0	19.0	8.5	23.5	28.0	15.5
Merged-chr5-136219111-2	chr5	136218611	136219611	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001302938, exon 9 of 9)	exon (NM_001302938, exon 9 of 9)	-20157.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121740305-4	chr10	121739755	121740755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359720, intron 1 of 2)	intron (NM_001359720, intron 1 of 2)	325.0	NM_173022	270802.0	Mm.209172	NM_173022	ENSMUSG00000053684	BC048403	E030027L10	cDNA sequence BC048403	protein-coding	33.0	115.5	98.5	45.5	130.0	98.0
Merged-chr5-64619993-4	chr5	64619493	64620493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-9294.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70562908-4	chr11	70562423	70563423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045959)	promoter-TSS (NM_001045959)	42.0	NM_016713	50932.0	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	12.5	27.0	12.0	15.5	22.5	20.0
Merged-chr2-28591669-4	chr2	28591175	28592175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME4b|LINE|L1	-8396.0	NM_001290484	70239.0	Mm.274120	NM_148928	ENSMUSG00000026816	Gtf3c5	2700084A09Rik|TFIIIC63|TFiiiC2-63	general transcription factor IIIC, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80071836-2	chr10	80071336	80072336	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359635, intron 5 of 31)	intron (NM_001359635, intron 5 of 31)	3603.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107554579-4	chr9	107554081	107555081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019713)	promoter-TSS (NM_019713)	-2.0	NM_019713	56289.0	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	154.0	341.0	307.5	154.0	257.5	256.5
Merged-chr7-102257700-2	chr7	102257200	102258200	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-7582.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4863089-4	chr16	4862608	4863608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030192, exon 12 of 16)	exon (NM_030192, exon 12 of 16)	16743.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131200214-4	chr1	131199709	131200709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311094)	promoter-TSS (NM_001311094)	-24.0	NM_001311094	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152830679-4	chr2	152830170	152831170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289717)	promoter-TSS (NM_001289717)	47.0	NM_001289716	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60268962-4	chr10	60268470	60269470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	-8658.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-143035175-4	chr2	143034661	143035661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27908.0	NM_021335	20639.0	Mm.1323	NM_021335	ENSMUSG00000008333	Snrpb2	2810052G09Rik	U2 small nuclear ribonucleoprotein B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-11715865-2	chr15	11715365	11716365	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	189809.0	NM_008728	18162.0	Mm.25259	NM_008728	ENSMUSG00000022206	Npr3	ANP-C|ANPR-C|EF-2|NPR-C|lgj|stri	natriuretic peptide receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94566232-4	chr16	94565723	94566723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-3983.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114458392-4	chr6	114457872	114458872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317124)	promoter-TSS (NM_001317124)	-150.0	NM_001317124	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122872990-4	chr6	122872470	122873470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1587.0	NM_026267	67602.0	Mm.288114	NM_026267	ENSMUSG00000030327	Necap1	1200016B17Rik|AI747569|mFLJ00061	NECAP endocytosis associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99535052-4	chr7	99534575	99535575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177231)	promoter-TSS (NM_177231)	-411.0	NM_178220	109689.0	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	8.5	14.0	9.0	10.0	18.5	10.5
Merged-chr11-48826160-3	chr11	48825651	48826651	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053166)	promoter-TSS (NM_053166)	13.0	NM_053166	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-17002634-4	chr11	17002145	17003145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	6073.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	35.0	110.5	76.0	48.5	98.5	76.0
Merged-chr4-89351282-4	chr4	89350756	89351756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132431, intron 2 of 9)	intron (NR_132431, intron 2 of 9)	-40224.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	4.5	3.5	3.5	0.0	15.5	12.0
Merged-chr17-80112825-5	chr17	80112413	80113413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14558.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101382450-4	chr7	101381959	101382959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040112, intron 1 of 30)	intron (NM_001040112, intron 1 of 30)	-3067.0	NM_027180	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	41.0	160.5	78.5	68.5	133.5	97.5
Merged-chr1-134078402-3	chr1	134077914	134078914	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007570, intron 1 of 1)	intron (NM_007570, intron 1 of 1)	741.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-88523034-4	chr9	88522518	88523518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040721)	promoter-TSS (NR_040721)	-121.0	NR_040721	72655.0	Mm.21798	NR_040721	ENSMUSG00000097195	Snhg5	2810026P18Rik|4933428I09Rik|mU50HG-b	small nucleolar RNA host gene 5	ncRNA	16.0	43.0	15.0	10.5	24.5	24.5
Merged-chr2-94002517-2	chr2	94002017	94003017	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026944, intron 6 of 9)	intron (NM_026944, intron 6 of 9)	8213.0	NM_026944	69113.0	Mm.272498	NM_026944	ENSMUSG00000040174	Alkbh3	1700108H04Rik|1810020C19Rik|Abh3|mABH3	alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113140271-4	chr12	113139743	113140743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347443)	promoter-TSS (NM_001347443)	7.0	NM_024223	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-51013246-4	chr2	51012725	51013725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103541.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140116664-2	chr5	140116164	140117164	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359025, intron 14 of 17)	B4A|SINE|B4	58254.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115808631-4	chr6	115808129	115809129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028546)	promoter-TSS (NR_028546)	114.0	NM_172086	19951.0	Mm.104368	NM_172086	ENSMUSG00000057841	Rpl32	AU020185|rpL32-3A	ribosomal protein L32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123564147-4	chr4	123563657	123564657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-52263.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-5576307-4	chr3	5575803	5576803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163301)	promoter-TSS (NM_001163301)	-55.0	NM_008994	19302.0	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	148.5	295.5	274.0	158.5	389.0	274.5
Merged-chr1-95323201-4	chr1	95322693	95323693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026321, intron 1 of 2)	intron (NM_026321, intron 1 of 2)	9565.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95693199-1	chr3	95692699	95693699	+	1000.0	f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-5282.0	NM_001301705	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	3.5	0.0	1.0	0.0	0.0	1.0
Merged-chr4-40703156-4	chr4	40702652	40703652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025545)	promoter-TSS (NM_025545)	42.0	NM_001025444	66408.0	Mm.430710	NM_025545	ENSMUSG00000028411	Aptx	2410016G21Rik|AA388047|FHA-HIT	aprataxin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-10660172-4	chr10	10659674	10660674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54229.0	NR_033630	382450.0	Mm.422788	NR_033630	ENSMUSG00000098065	Gm5177	EG382450	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116655291-4	chr4	116654794	116655794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3620.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142895291-4	chr5	142894774	142895774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033312)	promoter-TSS (NM_001033312)	-36.0	NM_001033312	231863.0	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3502279-2	chr5	3501779	3502779	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-41554.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	42.5	25.5	6.0	14.0	28.0	19.5
Merged-chr12-111425479-4	chr12	111424989	111425989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289487, intron 6 of 13)	intron (NM_001289487, intron 6 of 13)	8044.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46404865-4	chr18	46404373	46405373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60943.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41829847-4	chr19	41829309	41830309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008043)	promoter-TSS (NM_008043)	-161.0	NM_008043	14296.0	Mm.4573	NM_008043	ENSMUSG00000067199	Frat1	AW060382	frequently rearranged in advanced T cell lymphomas	protein-coding	32.5	69.5	58.5	11.5	27.0	12.5
Merged-chr2-34771959-4	chr2	34771525	34772525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022310)	promoter-TSS (NM_022310)	-65.0	NM_001163434	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-38780287-4	chr12	38779780	38780780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007960, exon 1 of 13)	5' UTR (NM_007960, exon 1 of 13)	198.0	NM_007960	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	120.0	255.5	194.5	127.0	269.0	246.5
Merged-chr13-94050245-4	chr13	94049731	94050731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7565.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-50842087-4	chr2	50841560	50842560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67624.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-20538712-4	chr3	20538188	20539188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-171511.0	NM_175086	11608.0	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-49979329-4	chr18	49978820	49979820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177760)	promoter-TSS (NM_001177760)	-107.0	NM_001177760	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0.0	11.5	4.0	5.5	8.5	3.0
Merged-chr16-76110575-4	chr16	76110079	76111079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12034.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123260840-4	chr9	123260292	123261292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001002267)	promoter-TSS (NM_001002267)	-3.0	NM_001002267	72309.0	Mm.8569	NM_001002267	ENSMUSG00000054871	Tmem158	2310037P21Rik|Ris1	transmembrane protein 158	protein-coding	0.0	0.0	2.5	0.0	0.0	3.0
Merged-chr5-53589322-5	chr5	53588764	53589764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080928, intron 1 of 10)	CpG	-1082.0	NM_009035	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-34882966-4	chr4	34882408	34883408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013889)	promoter-TSS (NM_013889)	40.0	NM_013889	30046.0	Mm.38193	NM_013889	ENSMUSG00000039967	Zfp292	5730450D02Rik|5830493J20Rik|9430062L07Rik|AI449016|Krox-10|Zfp-15|Zfp15|Zn-15|Zn-16|mKIAA0530	zinc finger protein 292	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168955545-4	chr2	168955025	168956025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009564)	promoter-TSS (NM_009564)	62.0	NM_009564	22722.0	Mm.2095	NM_009564	ENSMUSG00000027551	Zfp64	-	zinc finger protein 64	protein-coding	32.5	53.5	32.5	27.0	44.5	21.5
Merged-chr3-130073237-4	chr3	130072747	130073747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12340.0	NM_207209	99683.0	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118937819-4	chr14	118937319	118938319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008929)	promoter-TSS (NM_008929)	-113.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	142.5	336.5	331.5	134.0	390.5	284.5
Merged-chr17-10326762-4	chr17	10326262	10327262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045461, intron 2 of 2)	intron (NR_045461, intron 2 of 2)	2160.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36042836-4	chr17	36042318	36043318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347382)	promoter-TSS (NM_001347382)	-76.0	NM_001359756	15039.0	Mm.195061	NM_010396	ENSMUSG00000056116	H2-T22	27b|H-2T17|H-2T22|H2-T17|T22b	histocompatibility 2, T region locus 22	protein-coding	27.5	130.5	56.0	42.0	135.5	92.0
Merged-chr6-53370148-4	chr6	53369636	53370636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 2 of 10)	intron (NM_001327821, intron 2 of 10)	82833.0	NM_001327821	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.0	19.5	4.5	4.0	10.0	2.5
Merged-chr8-41016367-4	chr8	41015892	41016892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 6 of 13)	intron (NM_001005863, intron 6 of 13)	-1076.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	105.5	184.5	100.0	51.0	91.5	69.0
Merged-chr4-6370802-4	chr4	6370312	6371312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	5132.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	51.0	60.5	72.5	37.0	112.5	111.5
Merged-chr18-90018832-2	chr18	90018332	90019332	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-249696.0	NM_001039173	623279.0	Mm.447164	NM_001039173	ENSMUSG00000073514	Dok6	Dok-6	docking protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91683420-4	chr6	91682922	91683922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009320)	promoter-TSS (NM_009320)	-645.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25550471-4	chr15	25549976	25550976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72074.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122986258-4	chr10	122985764	122986764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029527)	promoter-TSS (NR_029527)	-540.0	NR_029527	387251.0		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-125673042-4	chr2	125672545	125673545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025613)	promoter-TSS (NM_025613)	-55.0	NM_025613	58521.0	Mm.425101	NM_025613	ENSMUSG00000091337	Eid1	2610002K20Rik|Cri1|EID-1|ORF12|PNAS-22|PTD014	EP300 interacting inhibitor of differentiation 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27827166-4	chr17	27826663	27827663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6621.0	NM_001271511	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	14.0	40.5	53.0	17.0	72.0	41.0
Merged-chr19-61244897-4	chr19	61244394	61245394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16476.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34168526-4	chr7	34168019	34169019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016682)	promoter-TSS (NM_016682)	10.0	NM_016682	50995.0	Mm.27560	NM_016682	ENSMUSG00000052997	Uba2	AA986091|Arx|Sae2|UBA1|Ubl1a2|Uble1b	ubiquitin-like modifier activating enzyme 2	protein-coding	4.5	22.5	11.5	0.0	17.5	26.5
Merged-chr17-63932724-2	chr17	63932224	63933224	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 7 of 18)	Lx10|LINE|L1	-5248.0	NM_008000	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78136153-4	chr10	78135675	78136675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33593.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34247577-4	chr18	34247076	34248076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360979)	promoter-TSS (NM_001360979)	-118.0	NM_001360980	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	15.0	32.0	35.5	8.5	36.0	14.5
Merged-chr9-106230495-4	chr9	106230047	106231047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7949.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	60.5	105.5	116.0	22.0	130.5	83.5
Merged-chr15-82987949-4	chr15	82987443	82988443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28647.0	NR_037241	100526477.0		NR_037241	ENSMUSG00000092751	Mir3080	mmu-mir-3080	microRNA 3080	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25980422-4	chr8	25979904	25980904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029037)	TTS (NM_029037)	-3660.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-143915425-4	chr2	143914913	143915913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019771)	promoter-TSS (NM_019771)	82.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45123936-2	chr7	45123436	45124436	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_000004)	promoter-TSS (NR_000004)	453.0	NM_013725	27207.0	Mm.196538	NM_013725	ENSMUSG00000003429	Rps11	-	ribosomal protein S11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133132257-4	chr4	133131770	133132770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	1637.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	34.0	157.0	132.5	53.5	173.0	114.0
Merged-chr1-131659728-4	chr1	131659224	131660224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007799, intron 1 of 9)	intron (NM_007799, intron 1 of 9)	21410.0	NM_007799	13034.0	Mm.230249	NM_007799	ENSMUSG00000004552	Ctse	A430072O03Rik|C920004C08Rik|CE|CatE	cathepsin E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102515165-4	chr4	102514650	102515650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-54910.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	23.5	21.5	26.5	32.5	57.0	39.0
Merged-chr2-127788910-4	chr2	127788409	127789409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016902)	promoter-TSS (NM_016902)	-18.0	NM_001355429	53885.0	Mm.210766	NM_016902	ENSMUSG00000027378	Nphp1	-	nephronophthisis 1 (juvenile) homolog (human)	protein-coding	8.5	67.5	34.0	25.0	46.5	40.0
Merged-chr6-83053427-2	chr6	83052927	83053927	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013586)	TTS (NM_013586)	-1094.0	NM_007517	11993.0	Mm.386752	NM_007517	ENSMUSG00000068328	Aup1	AA589454	ancient ubiquitous protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122550979-2	chr8	122550479	122551479	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357349, exon 1 of 51)	exon (NM_001357349, exon 1 of 51)	350.0	NM_001037298	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	16.0	52.0	60.5	11.5	59.5	28.5
Merged-chr7-105744386-4	chr7	105743876	105744876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020024)	promoter-TSS (NM_020024)	-38.0	NM_020024	24075.0	Mm.274846	NM_020024	ENSMUSG00000043866	Taf10	30kDa|AU041226|TAFII30|Taf2h	TATA-box binding protein associated factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96500489-4	chr3	96499974	96500974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24711.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	10.5	46.0	32.5	5.0	25.5	19.5
Merged-chr17-32114238-2	chr17	32113738	32114738	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22815.0	NR_027316	435518.0	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-12176809-4	chr12	12176297	12177297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85342.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	4.0	5.5	7.5	5.0	18.0	8.5
Merged-chr17-70849161-6	chr17	70848698	70849698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164074, intron 1 of 2)	intron (NM_001164074, intron 1 of 2)	592.0	NM_001164076	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	60.5	84.5	86.5	66.5	147.0	93.0
Merged-chr1-127976254-2	chr1	127975754	127976754	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027678, exon 13 of 21)	exon (NM_027678, exon 13 of 21)	107481.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-127611327-4	chr5	127610830	127611830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133895, intron 1 of 7)	intron (NM_133895, intron 1 of 7)	6062.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-52119391-4	chr1	52118886	52119886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357627)	promoter-TSS (NM_001357627)	-52.0	NM_001357627	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127260813-4	chr7	127260306	127261306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023203)	promoter-TSS (NM_023203)	-139.0	NM_023203	66422.0	Mm.29898	NM_023203	ENSMUSG00000042462	Dctpp1	2410015N17Rik|AI854235|RS21-C6	dCTP pyrophosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50779586-4	chr16	50779080	50780080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3829.0	NR_131006	78639.0	Mm.160109	NR_131005	ENSMUSG00000092276	1700116B05Rik	-	RIKEN cDNA 1700116B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90696286-4	chr5	90695785	90696785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55758.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	11.5	9.5	15.0	11.0	10.0	15.0
Merged-chr2-128750240-2	chr2	128749740	128750740	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 5 of 18)	intron (NM_008587, intron 5 of 18)	51325.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	23.0	125.0	76.0	38.5	85.5	55.0
Merged-chr9-54734042-3	chr9	54733554	54734554	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025376, intron 1 of 10)	intron (NM_001025376, intron 1 of 10)	495.0	NM_023191	66317.0	Mm.28437	NM_023191	ENSMUSG00000061559	Wdr61	2700038L12Rik|2810418I05Rik|REC14	WD repeat domain 61	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19474264-4	chr7	19473751	19474751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-15757.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101504725-4	chr7	101504224	101505224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001143849, exon 17 of 30)	exon (NM_001143849, exon 17 of 30)	29348.0	NR_029791	387157.0		NR_029791	ENSMUSG00000065446	Mir139	Mirn139|mir-139|mmu-mir-139	microRNA 139	ncRNA	5.5	6.0	7.5	2.5	6.5	15.0
Merged-chr2-70825706-4	chr2	70825230	70826230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172664)	promoter-TSS (NM_172664)	-250.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128811569-4	chr4	128811058	128812058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	-5446.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5098570-2	chr19	5098070	5099070	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302333)	promoter-TSS (NM_001302333)	-49.0	NM_009920	12794.0	Mm.299737	NM_009920	ENSMUSG00000024873	Cnih2	CNIH-2|Cnil	cornichon family AMPA receptor auxiliary protein 2	protein-coding	0.5	0.0	0.0	1.5	0.0	0.0
Merged-chr2-127333287-2	chr2	127332787	127333787	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2872.0	NM_010090	13537.0	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-69993182-4	chr9	69992689	69993689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008238, intron 1 of 9)	intron (NM_001008238, intron 1 of 9)	3723.0	NM_001008238	12175.0	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	0.0	2.5	1.0	0.0	1.0	1.0
Merged-chr5-32133730-4	chr5	32133217	32134217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2755.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66389356-4	chr7	66388837	66389837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146191)	promoter-TSS (NM_146191)	-996.0	NM_146191	233328.0	Mm.33284	NM_146191	ENSMUSG00000015133	Lrrk1	AW319595|C230002E15Rik|D130026O16Rik|mKIAA1790	leucine-rich repeat kinase 1	protein-coding	103.5	227.5	112.5	46.5	156.0	130.5
Merged-chr7-143023695-4	chr7	143023196	143024196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110354, intron 4 of 4)	intron (NR_110354, intron 4 of 4)	18037.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	33.0	53.5	61.5	56.5	58.0	71.5
Merged-chr1-176824052-4	chr1	176823555	176824555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 1 of 18)	intron (NM_001357390, intron 1 of 18)	9395.0	NM_029756	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	100.0	176.0	147.5	47.5	133.0	134.5
Merged-chr6-47636806-4	chr6	47636266	47637266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18328.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170644502-4	chr1	170644027	170645027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177068)	promoter-TSS (NM_177068)	-5.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102386860-2	chr15	102386349	102387349	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-19467.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79088212-4	chr11	79087709	79088709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	-28373.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27762711-4	chr2	27762212	27763212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011305, exon 10 of 10)	3' UTR (NM_011305, exon 10 of 10)	52129.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-69015393-4	chr2	69014887	69015887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 4 of 10)	intron (NM_001347161, intron 4 of 10)	-120413.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147404290-1	chr4	147403790	147404790	+	1000.0	f1_balb.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	-148987.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74017847-4	chr17	74017350	74018350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053188, intron 4 of 4)	intron (NM_053188, intron 4 of 4)	30066.0	NM_053188	94224.0	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119547631-4	chr2	119547139	119548139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019769)	promoter-TSS (NM_019769)	-12.0	NM_172857	241624.0	Mm.212773	NM_172857	ENSMUSG00000048647	Exd1	4932702D22Rik|Exdl1|mExd1	exonuclease 3'-5' domain containing 1	protein-coding	3.5	37.0	18.0	13.0	61.0	29.0
Merged-chr6-5298332-4	chr6	5297818	5298818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183308)	promoter-TSS (NM_183308)	55.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	26.5	45.0	44.0	8.0	24.5	24.5
Merged-chr6-88518920-4	chr6	88518423	88519423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016906)	promoter-TSS (NM_016906)	-123.0	NM_016906	53421.0	Mm.28375	NM_016906	ENSMUSG00000030082	Sec61a1	AA408394|AA410007|Sec61a	Sec61 alpha 1 subunit (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126867829-4	chr8	126867298	126868298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18778.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	6.0	20.5	19.5	6.0	20.5	18.5
Merged-chr16-87736423-2	chr16	87735923	87736923	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37469.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128547847-4	chr10	128547346	128548346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134003)	promoter-TSS (NM_134003)	-102.0	NM_134003	103284.0	Mm.68289	NM_134003	ENSMUSG00000039810	Zc3h10	AI790326	zinc finger CCCH type containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170215365-4	chr1	170214879	170215879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360809)	promoter-TSS (NM_001360809)	28.0	NM_010633	16589.0	Mm.209150	NM_010633	ENSMUSG00000026667	Uhmk1	4732477C12Rik|4930500M09Rik|AA673513|AI449218|AU021979|C820018A03Rik|KIS|Kist|P-CIP2	U2AF homology motif (UHM) kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113366077-2	chr5	113365579	113366579	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8785.0	NM_001012726	503692.0	Mm.348794	NM_001012726	ENSMUSG00000053873	Aym1	-	activator of yeast meiotic promoters 1	protein-coding	0.0	1.0	1.5	0.0	0.0	2.0
Merged-chr6-100370506-4	chr6	100370013	100371013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	-83155.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94544135-4	chr11	94543646	94544646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001013381, exon 5 of 9)	exon (NM_001013381, exon 5 of 9)	5061.0	NM_001013381	237926.0	Mm.342275	NM_001013381	ENSMUSG00000039096	Rsad1	B430319G23|BC056485	radical S-adenosyl methionine domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65938162-4	chr5	65937667	65938667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28957.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34487595-4	chr5	34487071	34488071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26408.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	11.5	40.5	29.0	20.0	38.5	31.0
Merged-chr12-41196629-4	chr12	41196157	41197157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	172567.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129489668-4	chr2	129489177	129490177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177653, intron 1 of 6)	intron (NM_177653, intron 1 of 6)	46925.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	264.0	610.5	508.0	303.5	660.0	418.5
Merged-chr11-70084800-4	chr11	70084303	70085303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7841.0	NM_007493	11890.0	Mm.1357	NM_007493	ENSMUSG00000040963	Asgr2	ASGPR2|Asgr|Asgr-2|HL-2	asialoglycoprotein receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54816656-4	chr6	54816157	54817157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199143)	promoter-TSS (NM_199143)	-259.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25333159-4	chr2	25332608	25333608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027448)	promoter-TSS (NR_027448)	365.0	NM_001029983	227619.0	Mm.270798	NM_001029983	ENSMUSG00000036646	Man1b1	E430019H13Rik|ERMan1|Gm108|MANA-ER	mannosidase, alpha, class 1B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5637398-4	chr19	5636863	5637863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009045)	promoter-TSS (NM_009045)	-127.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	105.5	223.0	181.0	112.5	215.0	159.5
Merged-chr2-174464119-4	chr2	174463617	174464617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025983)	promoter-TSS (NM_025983)	-16.0	NM_025983	67126.0	Mm.20841	NM_025983	ENSMUSG00000016252	Atp5e	2410043G19Rik|ATPE|AV000645|Atp5f1e	ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111316366-1	chr12	111315866	111316866	+	1000.0	f1_balb.idr	intron (NM_183016, intron 18 of 36)	B3A|SINE|B2	45270.0	NM_033603	93835.0	Mm.197639	NM_033603	ENSMUSG00000021278	Amn	-	amnionless	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25457786-4	chr14	25457305	25458305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1380.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24169078-4	chr17	24168584	24169584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361535)	promoter-TSS (NM_001361535)	-275.0	NM_001361535	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	164.5	441.5	295.5	126.5	313.0	224.5
Merged-chr1-24679169-4	chr1	24678692	24679692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310483, intron 1 of 15)	intron (NM_001310483, intron 1 of 15)	274.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34850288-4	chr18	34849807	34850807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9718.0	NM_144865	225362.0	Mm.293588	NM_144865	ENSMUSG00000038555	Reep2	-	receptor accessory protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-17993331-4	chr13	17992839	17993839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025904)	promoter-TSS (NM_025904)	12.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102453718-4	chr12	102453213	102454213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13900.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	114.5	275.0	165.0	98.0	222.0	175.0
Merged-chr18-60733169-3	chr18	60732681	60733681	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348102)	promoter-TSS (NM_001348102)	-40.0	NM_001348102	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0.0	8.0	7.5	0.0	12.5	14.0
Merged-chr9-120933398-4	chr9	120932884	120933884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165902)	promoter-TSS (NM_001165902)	-16.0	NM_007614	12387.0	Mm.291928	NM_007614	ENSMUSG00000006932	Ctnnb1	Bfc|Catnb|Mesc	catenin (cadherin associated protein), beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-71015362-1	chr12	71014862	71015862	+	1000.0	f0_c57.idr	promoter-TSS (NM_001081195)	promoter-TSS (NM_001081195)	461.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44527848-2	chr11	44527348	44528348	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 2 of 5)	intron (NM_001166553, intron 2 of 5)	8471.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-153817472-1	chr4	153816972	153817972	+	1000.0	f0_balb.idr	Intergenic	Intergenic	133004.0	NR_040670	407793.0	Mm.260950	NR_040670		BC039966	-	cDNA sequence BC039966	ncRNA	0.0	0.0	0.0	0.0	2.0	1.0
Merged-chr2-156720920-4	chr2	156720439	156721439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040505)	promoter-TSS (NR_040505)	-26.0	NM_001042488	228836.0	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	DLG associated protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37793127-3	chr13	37792606	37793606	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32932.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	15.5	13.5	15.0	15.5	64.0	47.0
Merged-chr17-12250099-4	chr17	12249593	12250593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357722, intron 11 of 25)	RLTR44A|LTR|ERVK	68567.0	NM_011948	26407.0	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18050968-2	chr2	18050468	18051468	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2519.0	NM_028317	72668.0	Mm.102183	NM_028317	ENSMUSG00000054074	Skida1	2810030E01Rik|5730507N06Rik|BB088113|DLN-1	SKI/DACH domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81081501-4	chr15	81080966	81081966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	23581.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	7.5	38.5	19.0	27.5	27.5	26.0
Merged-chr12-102437691-2	chr12	102437208	102438208	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_011175, intron 1 of 13)	B1_Mur2|SINE|Alu	2105.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	73.5	131.5	80.5	83.5	141.0	81.0
Merged-chr7-140857403-4	chr7	140856956	140857956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053194)	promoter-TSS (NM_053194)	59.0	NM_053194	101489.0	Mm.281916	NM_053194	ENSMUSG00000025485	Ric8a	AI114950|RIC-8|Ric8	RIC8 guanine nucleotide exchange factor A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97449385-2	chr6	97448885	97449885	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	B4A|SINE|B4	9901.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109448462-4	chr3	109447960	109448960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	L3|LINE|CR1	107777.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	39.5	39.5	51.5	30.0	64.5	63.5
Merged-chr10-61146957-4	chr10	61146499	61147499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316674, intron 1 of 14)	(CAGCT)n|Simple_repeat|Simple_repeat	685.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110642038-2	chr9	110641538	110642538	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_183276, exon 8 of 54)	exon (NM_183276, exon 8 of 54)	-5923.0	NR_106186	102466885.0		NR_106186	ENSMUSG00000099275	Mir8107	Gm27455|mmu-mir-8107	microRNA 8107	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108660115-1	chr6	108659615	108660615	+	1000.0	f0_c57.idr	promoter-TSS (NM_011498)	promoter-TSS (NM_011498)	-514.0	NM_011498	20893.0	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-108162075-4	chr10	108161577	108162577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027892)	promoter-TSS (NM_027892)	-323.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131517745-4	chr2	131517246	131518246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177840, intron 3 of 3)	intron (NM_001177840, intron 3 of 3)	25884.0	NM_001177838	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-43966018-4	chr16	43965538	43966538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13012.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	15.0	27.5	17.0	7.0	37.5	16.5
Merged-chr5-36562975-1	chr5	36562475	36563475	+	1000.0	f0_balb.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	19422.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	48.0	76.5	94.0	71.5	116.5	78.0
Merged-chr11-72796153-4	chr11	72795656	72796656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045536)	promoter-TSS (NM_001045536)	-70.0	NM_001045536	195018.0	Mm.272030	NM_001045536	ENSMUSG00000055670	Zzef1	8430405D05Rik|BC051585|C130099L13Rik|C85424|NSPA|mKIAA0399	zinc finger, ZZ-type with EF hand domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19694813-2	chr7	19694313	19695313	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2154.0	NM_007469	11812.0	Mm.182440	NM_007469	ENSMUSG00000040564	Apoc1	Apo-CIB|ApoC-IB|apo-CI|apoC-I	apolipoprotein C-I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60148291-2	chr10	60147791	60148791	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21515.0	NR_105871	102465546.0		NR_105871	ENSMUSG00000105468	Mir6906	mmu-mir-6906	microRNA 6906	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166703133-3	chr2	166702627	166703627	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	10705.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70831815-4	chr17	70831326	70832326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	14951.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113484324-4	chr13	113483827	113484827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 3 of 6)	intron (NR_045501, intron 3 of 6)	18517.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133177040-3	chr4	133176558	133177558	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 2 of 8)	intron (NM_153423, intron 2 of 8)	-18597.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	101.0	121.5	125.5	69.5	160.0	106.0
Merged-chr7-118855751-4	chr7	118855257	118856257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168220)	promoter-TSS (NM_001168220)	-18.0	NM_001081446	434232.0	Mm.458509	NM_001081446	ENSMUSG00000073856	Iqck	A230094G09Rik	IQ motif containing K	protein-coding	3.0	18.5	4.0	18.5	18.5	11.0
Merged-chr11-87442884-4	chr11	87442393	87443393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	CpG	15302.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-57576376-4	chr8	57575829	57576829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 2 of 11)	Tigger9a|DNA|TcMar-Tigger	64486.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44931570-4	chr19	44931044	44932044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172638, intron 1 of 19)	CpG	425.0	NM_001081225	226151.0	Mm.212609	NM_172638	ENSMUSG00000036097	Slf2	3632432H19|Fam178a	SMC5-SMC6 complex localization factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-160212298-2	chr1	160211798	160212798	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009786, intron 1 of 5)	intron (NM_009786, intron 1 of 5)	594.0	NM_009786	12301.0	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	52.0	125.5	132.0	58.0	212.5	139.5
Merged-chr8-68062476-4	chr8	68061967	68062967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-87893.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	5.5	0.0	0.0	4.0	0.0	1.0
Merged-chr14-54603480-4	chr14	54602988	54603988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028890, intron 1 of 6)	CpG	2420.0	NM_028890	74359.0	Mm.79815	NM_028890	ENSMUSG00000022179	4931414P19Rik	Rtfc	RIKEN cDNA 4931414P19 gene	protein-coding	65.0	138.0	110.5	33.5	113.5	68.5
Merged-chr2-84592950-4	chr2	84592440	84593440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56540.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	9.5	12.0	17.0	3.0	30.5	5.5
Merged-chr5-16552801-4	chr5	16552306	16553306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010427)	promoter-TSS (NM_010427)	-689.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55734527-4	chr16	55734019	55735019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87619.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23657935-4	chr11	23657431	23658431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023651, intron 1 of 3)	intron (NM_023651, intron 1 of 3)	-7743.0	NM_028956	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-11996059-4	chr15	11995570	11996570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011294)	promoter-TSS (NM_011294)	-63.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116836170-4	chr3	116835643	116836643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23424.0	NM_001113478	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	1.5	15.5	5.5	1.5	0.0	4.5
Merged-chr8-85482024-4	chr8	85481521	85482521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10596.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83534860-4	chr11	83534365	83535365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4347.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100041768-4	chr15	100041238	100042238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	3074.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	24.0	25.5	18.5	5.5	12.5	15.5
Merged-chr17-88557257-4	chr17	88556758	88557758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028658, intron 9 of 21)	intron (NM_028658, intron 9 of 21)	27134.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	0.0	0.0	6.0	0.0	1.5	3.5
Merged-chr15-99295106-4	chr15	99294641	99295641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018786)	promoter-TSS (NM_018786)	-100.0	NM_018786	54614.0	Mm.358668	NM_018786	ENSMUSG00000023007	Prpf40b	2610317D23Rik|Hypc	pre-mRNA processing factor 40B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59565990-4	chr4	59565498	59566498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-15565.0	NM_001301367	72479.0	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5977646-2	chr17	5977146	5978146	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151772, intron 2 of 25)	intron (NR_151772, intron 2 of 25)	2060.0	NM_011523	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78258439-4	chr15	78257945	78258945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008677, intron 7 of 9)	intron (NM_008677, intron 7 of 9)	13634.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	252.0	536.5	331.0	238.5	525.0	332.0
Merged-chr17-21707701-4	chr17	21707224	21708224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008501)	promoter-TSS (NM_001008501)	-17.0	NM_001008501	240034.0	Mm.34723	NM_001008501	ENSMUSG00000067928	Zfp760	9430018I06|BC029103	zinc finger protein 760	protein-coding	21.0	22.0	7.0	45.5	144.5	87.5
Merged-chr7-109959757-4	chr7	109959255	109960255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021494, intron 1 of 22)	intron (NM_021494, intron 1 of 22)	667.0	NM_021494	19347.0	Mm.21904	NM_021494	ENSMUSG00000035901	Dennd5a	1500012B19Rik|AJ245569|AW496491|ORF37|Rab6ip1|mKIAA1091	DENN/MADD domain containing 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-17998954-2	chr5	17998454	17999454	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 3 of 7)	intron (NM_001081143, intron 3 of 7)	36384.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3235386-4	chr12	3234899	3235899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015551)	promoter-TSS (NR_015551)	-392.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146521201-8	chr3	146520727	146521727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027332, exon 1 of 5)	exon (NM_027332, exon 1 of 5)	196.0	NM_027332	70285.0	Mm.28128	NM_027332	ENSMUSG00000028187	Rpf1	2210420E24Rik|2310066N05Rik|Bxdc5	ribosome production factor 1 homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137079990-4	chr5	137079491	137080491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7719.0	NM_008871	18787.0	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	7.5	8.0	5.5	2.0	19.0	1.0
Merged-chr9-88710006-4	chr9	88709510	88710510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359992, intron 2 of 2)	intron (NM_001359992, intron 2 of 2)	9577.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84183823-2	chr15	84183323	84184323	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054088, intron 7 of 7)	RSINE1|SINE|B4	-8410.0	NM_178614	68653.0	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115510088-1	chr11	115509588	115510588	+	1000.0	f1_c57bl6.idr	intron (NM_008258, intron 1 of 4)	intron (NM_008258, intron 1 of 4)	4305.0	NM_008258	15374.0	Mm.1775	NM_008258	ENSMUSG00000020737	Jpt1	Hn1	Jupiter microtubule associated homolog 1	protein-coding	11.5	23.5	12.5	8.5	24.5	21.0
Merged-chr3-84772065-4	chr3	84771562	84772562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43515.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	97.0	248.0	246.5	122.0	241.5	164.0
Merged-chr15-13212142-3	chr15	13211636	13212636	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38461.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	3.0	2.5	0.0	2.0	2.5	0.0
Merged-chr13-51846170-1	chr13	51845670	51846670	+	1000.0	f0_c57.idr	promoter-TSS (NM_011817)	promoter-TSS (NM_011817)	-505.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64701946-4	chr5	64701471	64702471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33A_|LTR|ERVL	-91272.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-25548585-4	chr18	25548065	25549065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362322, intron 2 of 12)	intron (NM_001362322, intron 2 of 12)	131183.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138323252-4	chr1	138322756	138323756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49518.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7792874-4	chr10	7792358	7793358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026141)	promoter-TSS (NM_026141)	-36.0	NM_026141	67418.0	Mm.38927	NM_026141	ENSMUSG00000015757	Ppil4	3732410E19Rik|3830425H19Rik|AI788954|AW146233|PPIase	peptidylprolyl isomerase (cyclophilin)-like 4	protein-coding	38.5	85.0	55.5	28.0	69.0	67.5
Merged-chr7-128523556-4	chr7	128523027	128524027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013863)	promoter-TSS (NM_013863)	-56.0	NM_013863	29810.0	Mm.84073	NM_013863	ENSMUSG00000030847	Bag3	AA407278|Bis|mg638	BCL2-associated athanogene 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21425276-2	chr5	21424776	21425776	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029195)	promoter-TSS (NM_029195)	373.0	NM_177869	330050.0	Mm.40655	NM_177869	ENSMUSG00000047221	Fam185a	4631428I10|AI847670	family with sequence similarity 185, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-14657040-4	chr18	14656547	14657547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009280, intron 3 of 10)	intron (NM_009280, intron 3 of 10)	25867.0	NM_001161369	268996.0	Mm.31761	NM_009280	ENSMUSG00000037013	Ss18	D130059H17|Ssxt|Syt	SS18, nBAF chromatin remodeling complex subunit	protein-coding	106.5	193.0	216.0	93.0	204.0	201.0
Merged-chr3-95283034-4	chr3	95282540	95283540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173347)	promoter-TSS (NM_173347)	105.0	NM_199475	75007.0	Mm.279287	NM_133858	ENSMUSG00000038712	Mindy1	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|Fam63a|cI-40|mKIAA1390|ni	MINDY lysine 48 deubiquitinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75695835-2	chr2	75695335	75696335	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_132727, intron 1 of 1)	B1F|SINE|Alu	8828.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0.0	7.5	8.0	0.0	4.5	6.5
Merged-chr6-59024551-4	chr6	59024059	59025059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153574)	promoter-TSS (NM_153574)	-57.0	NM_153574	58909.0	Mm.28813	NM_153574	ENSMUSG00000037709	Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94387504-4	chr8	94386984	94387984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357205, intron 1 of 7)	intron (NM_001357205, intron 1 of 7)	1055.0	NM_022331	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	57.0	164.5	113.0	57.0	160.5	97.5
Merged-chr19-8819921-4	chr19	8819447	8820447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027412)	promoter-TSS (NM_027412)	546.0	NM_001081196	68693.0	Mm.476519	NM_001081196	ENSMUSG00000071659	Hnrnpul2	1110031M08Rik|AI465155|Hnrpul2	heterogeneous nuclear ribonucleoprotein U-like 2	protein-coding	0.0	2.5	0.0	0.0	2.0	1.0
Merged-chr7-25239394-4	chr7	25238917	25239917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1566.0	NM_001031667	606496.0	Mm.491101	NM_001031667	ENSMUSG00000057177	Gsk3a	2700086H06Rik	glycogen synthase kinase 3 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75109456-4	chr8	75108943	75109943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008566)	promoter-TSS (NM_008566)	-66.0	NM_001302540	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	10.5	34.0	22.0	17.5	45.5	20.5
Merged-chr8-47714140-4	chr8	47713647	47714647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172407)	promoter-TSS (NM_172407)	-216.0	NM_172407	70925.0	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110980184-3	chr5	110979697	110980697	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	-23947.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	3.0	3.0	3.0	3.0	3.0	3.0
Merged-chr1-35995418-4	chr1	35994935	35995935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-72965.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-115765054-4	chr2	115764551	115765551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207264, intron 10 of 10)	intron (NM_207264, intron 10 of 10)	126326.0	NR_035476	100316703.0		NR_035476	ENSMUSG00000088606	Mir1951	mir-1951|mmu-mir-1951	microRNA 1951	ncRNA	1.0	2.0	3.0	7.5	11.5	0.5
Merged-chr4-11558872-4	chr4	11558395	11559395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256145)	promoter-TSS (NM_001256145)	-25.0	NM_001039556	623474.0	Mm.491200	NM_177285	ENSMUSG00000078773	Rad54b	E130016E03Rik	RAD54 homolog B (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50711560-4	chr9	50711050	50712050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311069, intron 1 of 19)	intron (NM_001311069, intron 1 of 19)	16434.0	NM_178118	330938.0	Mm.82598	NM_178118	ENSMUSG00000032064	Dixdc1	4930563F16Rik|BC048182|Ccd1|Ccd1Aalpha1L|Ccd1Abeta1L|Ccd1BalphaL|Ccd1BbetaL|Ccd1CL|mKIAA1735	DIX domain containing 1	protein-coding	1.0	3.5	0.0	0.5	5.0	6.0
Merged-chr5-105557969-4	chr5	105557448	105558448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	38477.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74440704-4	chr17	74440209	74441209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 5 of 8)	intron (NM_001033367, intron 5 of 8)	18399.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-17960807-4	chr13	17960310	17961310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16593.0	NM_019491	56044.0	Mm.27348	NM_019491	ENSMUSG00000008859	Rala	3010001O15Rik|AW322615|Ral|Rasl1	v-ral simian leukemia viral oncogene A (ras related)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-101781477-4	chr2	101780983	101781983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	16224.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	68.0	179.0	119.0	33.0	120.5	92.0
Merged-chr15-89075990-4	chr15	89075496	89076496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040417)	promoter-TSS (NR_040417)	-68.0	NM_026485	67976.0	Mm.284710	NM_026485	ENSMUSG00000015363	Trabd	5730502D15Rik|AL023039	TraB domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-56592870-4	chr9	56592362	56593362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42786.0	NM_001311076	235402.0	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145825410-4	chr2	145824908	145825908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	39292.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141794311-1	chr4	141793811	141794811	+	1000.0	f1_balb.idr	intron (NM_001355176, intron 1 of 8)	MIR3|SINE|MIR	699.0	NM_001277932	12371.0	Mm.88829	NM_015733	ENSMUSG00000028914	Casp9	AI115399|APAF-3|AW493809|CASP-9|Caspase-9|ICE-LAP6|Mch6	caspase 9	protein-coding	46.0	130.5	121.0	35.5	145.5	96.5
Merged-chr2-116971825-3	chr2	116971332	116972332	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71680.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-21934945-4	chr3	21934447	21935447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-141705.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98336735-2	chr7	98336235	98337235	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-15527.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39491590-4	chr18	39491084	39492084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4339.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99487134-4	chr5	99486655	99487655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	LTR33A|LTR|ERVL	-234228.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61540044-4	chr8	61539529	61540529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081390, intron 10 of 19)	intron (NM_001081390, intron 10 of 19)	51140.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	1.5	0.0	0.0	1.5	0.5	0.5
Merged-chr9-121332207-4	chr9	121331709	121332709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	34707.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128803638-4	chr2	128803136	128804136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008587)	TTS (NM_008587)	-14667.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	14.0	27.5	16.5	6.5	32.5	37.5
Merged-chr4-129854146-2	chr4	129853646	129854646	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33438.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	51.5	55.0	78.0	33.0	57.5	70.0
Merged-chr15-100085114-4	chr15	100084617	100085617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037311, intron 2 of 3)	B1_Mur2|SINE|Alu	46453.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-59943543-4	chr19	59943039	59944039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033172)	promoter-TSS (NM_001033172)	115.0	NM_001164367	74998.0	Mm.24167	NM_001033172	ENSMUSG00000040022	Rab11fip2	4930470G04Rik|A830046J09Rik|AW558126|Nrip11	RAB11 family interacting protein 2 (class I)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119034850-4	chr2	119034336	119035336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173450)	promoter-TSS (NM_173450)	46.0	NM_173450	271842.0	Mm.33617	NM_173450	ENSMUSG00000027324	Rpusd2	4921503C21Rik|9630001E10|BB231107	RNA pseudouridylate synthase domain containing 2	protein-coding	9.0	15.0	3.0	3.5	5.0	3.0
Merged-chr1-144140037-4	chr1	144139521	144140521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153171, intron 5 of 5)	intron (NM_153171, intron 5 of 5)	37351.0	NM_153171	246709.0	Mm.38271	NM_153171	ENSMUSG00000051079	Rgs13	-	regulator of G-protein signaling 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-29735847-4	chr5	29735314	29736314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011847)	promoter-TSS (NM_011847)	-84.0	NM_001359198	23950.0	Mm.290110	NM_011847	ENSMUSG00000029131	Dnajb6	HSJ-2|Mrj|mDj4	DnaJ heat shock protein family (Hsp40) member B6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80563839-4	chr15	80563338	80564338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER46C|DNA|TcMar-Tigger	-3368.0	NM_001163189	383075.0	Mm.297626	NM_001163189	ENSMUSG00000050439	Enthd1	Gm1242|Gm86	ENTH domain containing 1	protein-coding	6.0	6.0	4.5	2.5	3.0	3.5
Merged-chr6-147091496-4	chr6	147091007	147092007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081237, exon 1 of 3)	5' UTR (NM_001081237, exon 1 of 3)	432.0	NM_001081237	232539.0	Mm.491206	NM_001081237	ENSMUSG00000040102	Klhl42	A330079N23Rik|AI450355|C230080I20Rik|Ctb9|Klhdc5|mKIAA1340	kelch-like 42	protein-coding	5.5	17.5	10.0	9.5	39.0	21.0
Merged-chr13-5804786-4	chr13	5804257	5805257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53335.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5092931-4	chr6	5092423	5093423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 6 of 15)	intron (NM_181595, intron 6 of 15)	101023.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106796719-4	chr1	106796214	106797214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009190)	promoter-TSS (NM_009190)	11.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	95.0	241.5	159.0	105.5	203.0	133.0
Merged-chr7-48998871-4	chr7	48998338	48999338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	39765.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83834433-4	chr11	83833951	83834951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16418.0	NM_001291268	21410.0	Mm.7226	NM_009330	ENSMUSG00000020679	Hnf1b	HNF-1-beta|HNF-1B|HNF-1Beta|Hnf1beta|LFB3|Tcf-2|Tcf2|vHNF1	HNF1 homeobox B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110061550-4	chr7	110061025	110062025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009281)	promoter-TSS (NM_009281)	-177.0	NM_009281	20841.0	Mm.10815	NM_009281	ENSMUSG00000061079	Zfp143	AA959806|AU015869|D7Ertd805e|KRAB14|SBF|Staf|Zfp79|Zfp80-rs1|Znf143|pHZ-1	zinc finger protein 143	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-46873980-4	chr1	46873480	46874480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356417, intron 2 of 10)	intron (NM_001356417, intron 2 of 10)	-20362.0	NM_172653	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12921298-4	chr17	12920797	12921797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290712, intron 6 of 10)	intron (NM_001290712, intron 6 of 10)	-1560.0	NR_028479	100303746.0		NR_028479		Snora20	MBI-125	small nucleolar RNA, H/ACA box 20	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90484585-1	chr2	90484085	90485085	+	1000.0	f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-5411.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	6.5	7.5	7.5	12.5	3.5	8.5
Merged-chr10-41477892-4	chr10	41477386	41478386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358838)	promoter-TSS (NM_001358838)	-124.0	NM_001358838	171580.0	Mm.290431	NM_138315	ENSMUSG00000019823	Mical1	MICAL|MICAL-1|Nical	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131086842-4	chr2	131086337	131087337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011426)	promoter-TSS (NM_011426)	-72.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	71.0	124.5	121.5	52.0	188.0	139.0
Merged-chr6-84043638-4	chr6	84043128	84044128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 3 of 54)	intron (NM_001077694, intron 3 of 54)	24242.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102810498-4	chr14	102810002	102811002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	172130.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-35834562-4	chr11	35834076	35835076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025936)	promoter-TSS (NM_025936)	-48.0	NM_025936	104458.0	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76925655-4	chr15	76925103	76926103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172817)	promoter-TSS (NM_172817)	-155.0	NM_001168276	239546.0	Mm.183650	NM_172817	ENSMUSG00000054967	Zfp647	6030449J21|Es492|Znf250	zinc finger protein 647	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-144260547-2	chr5	144260047	144261047	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163709, intron 2 of 2)	intron (NM_001163709, intron 2 of 2)	5322.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31601780-4	chr15	31601273	31602273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007637)	promoter-TSS (NM_007637)	73.0	NM_007637	12465.0	Mm.282158	NM_007637	ENSMUSG00000022234	Cct5	CCT-epsilon|Ccte|TCP-1-epsilon|TCPE|mKIAA0098	chaperonin containing Tcp1, subunit 5 (epsilon)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70968983-7	chr17	70968473	70969473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21543.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	13.0	31.5	11.5	14.5	12.0	8.5
Merged-chr2-45117305-4	chr2	45116818	45117818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355288, exon 1 of 11)	5' UTR (NM_001355288, exon 1 of 11)	124.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117121222-4	chr4	117120720	117121720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_024078, exon 6 of 7)	non-coding (NR_024078, exon 6 of 7)	4505.0	NR_024078	78611.0	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	70.5	216.0	166.5	194.5	377.5	365.5
Merged-chr3-108997939-4	chr3	108997431	108998431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163567, intron 2 of 10)	intron (NM_001163567, intron 2 of 10)	29676.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	8.5	5.0	9.5	8.0	16.0	8.5
Merged-chr16-33782134-4	chr16	33781637	33782637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11900.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46941504-4	chr8	46941009	46942009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45378.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-8357438-4	chr5	8356934	8357934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	10726.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5042685-1	chr18	5042185	5043185	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-3904.0	NM_153153	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141273022-4	chr4	141272523	141273523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5416.0	NR_151527	100503810.0		NR_151527	ENSMUSG00000085395	Gm13056	-	predicted gene 13056	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147936702-4	chr4	147936201	147937201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011122)	promoter-TSS (NM_011122)	75.0	NM_011122	18822.0	Mm.23951	NM_011122	ENSMUSG00000019055	Plod1	2410042F05Rik|AI854890|AV007929|Lh1|Plod	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98795143-4	chr11	98794623	98795623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361932)	promoter-TSS (NM_001361932)	-393.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80043589-4	chr11	80043066	80044066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1M8|LINE|L1	37425.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79793590-4	chr10	79793098	79794098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161747)	promoter-TSS (NM_001161747)	26.0	NM_001161747	18483.0	Mm.34650	NM_023128	ENSMUSG00000035863	Palm	-	paralemmin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-26469915-2	chr12	26469450	26470450	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_020557, exon 1 of 5)	exon (NM_020557, exon 1 of 5)	735.0	NM_020557	22169.0	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	12.5	67.5	45.0	19.5	60.0	52.0
Merged-chr9-15709546-4	chr9	15709035	15710035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357565)	promoter-TSS (NM_001357565)	-203.0	NM_001357566	234967.0	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-90713321-4	chr6	90712832	90713832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356440, intron 1 of 13)	intron (NM_001356440, intron 1 of 13)	3197.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70475350-4	chr11	70474854	70475854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-15370.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-9876994-4	chr1	9876499	9877499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133220, intron 6 of 17)	intron (NM_133220, intron 6 of 17)	28718.0	NM_001037759	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	16.0	34.0	38.5	5.5	34.5	30.5
Merged-chr17-43568514-4	chr17	43568040	43569040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013737)	promoter-TSS (NM_013737)	89.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	36.5	85.5	92.5	113.0	148.5	120.5
Merged-chr10-82962855-4	chr10	82962333	82963333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie6|DNA|hAT-Charlie	-22664.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	5.0	2.0	6.5	11.5	9.0	16.5
Merged-chr4-19895844-4	chr4	19895340	19896340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175406, intron 2 of 7)	intron (NM_175406, intron 2 of 7)	26726.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-137867778-7	chr3	137867244	137868244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033155)	promoter-TSS (NM_001033155)	69.0	NM_001033155	70604.0	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	40.5	64.5	50.5	28.0	81.0	47.5
Merged-chr9-31280903-4	chr9	31280376	31281376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	9475.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99449488-3	chr15	99448994	99449994	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001884, intron 1 of 12)	intron (NM_001001884, intron 1 of 12)	8254.0	NM_001001884	380969.0	Mm.22915	NM_001001884	ENSMUSG00000023009	Nckap5l	C230021P08Rik|Cep169	NCK-associated protein 5-like	protein-coding	14.5	5.5	0.5	10.0	6.5	6.0
Merged-chr8-25597064-4	chr8	25596571	25597571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173012, intron 1 of 10)	CpG	416.0	NM_173012	270035.0	Mm.268349	NM_173012	ENSMUSG00000037363	Letm2	6030453H13|D030041N04Rik	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding	35.0	83.0	86.0	35.5	113.5	84.5
Merged-chr6-29793916-2	chr6	29793416	29794416	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	B1_Mus2|SINE|Alu	25473.0	NM_001171000	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-62558558-4	chr13	62558072	62559072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162911)	promoter-TSS (NM_001162911)	57.0	NM_175252	77117.0	Mm.440905	NM_175252	ENSMUSG00000074865	Zfp934	6720457D02Rik	zinc finger protein 934	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108445231-4	chr3	108444722	108445722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204979)	promoter-TSS (NM_001204979)	37.0	NM_011319	20226.0	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	17.0	31.0	22.0	7.0	35.5	9.5
Merged-chr6-134920395-4	chr6	134919920	134920920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009875)	promoter-TSS (NM_009875)	19.0	NM_009875	12576.0	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	92.5	216.5	128.0	72.5	210.5	145.0
Merged-chr5-24266699-4	chr5	24266169	24267169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9141.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	9.5	9.5	39.0	28.5	22.0	22.5
Merged-chr11-23067851-4	chr11	23067354	23068354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	54467.0	NM_028672	73873.0	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	11.0	41.5	48.0	7.0	19.0	18.5
Merged-chr12-102437181-4	chr12	102436684	102437684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	RSINE1|SINE|B4	2629.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	73.5	131.5	80.5	83.5	141.0	81.0
Merged-chr6-51881365-4	chr6	51880852	51881852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018773, intron 9 of 12)	intron (NM_018773, intron 9 of 12)	131197.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122009703-4	chr14	122009185	122010185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 8 of 8)	ORR1D2|LTR|ERVL-MaLR	-24989.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	0.0	1.5	2.5	4.0	3.5	4.0
Merged-chr1-45881534-4	chr1	45881033	45882033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44061.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34517415-4	chr19	34516901	34517901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	10073.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-47273528-2	chr4	47273028	47274028	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 14 of 39)	PB1D10|SINE|Alu	65516.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25096200-4	chr12	25095724	25096724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010496)	promoter-TSS (NM_010496)	-132.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	77.0	181.5	122.5	64.0	175.0	115.5
Merged-chr1-46853614-4	chr1	46853105	46854105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172653)	promoter-TSS (NM_172653)	13.0	NM_001356416	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-90234672-4	chr11	90234148	90235148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3b|LINE|CR1	-14828.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36717659-4	chr16	36717188	36718188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285791, intron 5 of 6)	intron (NM_001285791, intron 5 of 6)	23710.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72958439-4	chr6	72957946	72958946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039392)	promoter-TSS (NM_001039392)	37.0	NM_025284	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-86085163-4	chr5	86084663	86085663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310639, intron 3 of 7)	intron (NM_001310639, intron 3 of 7)	13417.0	NM_001310639	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	1.5	21.5	10.5	4.0	7.5	2.5
Merged-chr2-50875294-2	chr2	50874794	50875794	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	-34390.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37147359-4	chr19	37146865	37147865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198300, intron 2 of 10)	PB1D9|SINE|Alu	-26478.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21241513-4	chr9	21241009	21242009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2177.0	NM_001110306	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106562267-2	chr11	106561767	106562767	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198292, intron 2 of 11)	intron (NM_198292, intron 2 of 11)	50663.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112266391-7	chr5	112265908	112266908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312893, intron 4 of 5)	intron (NM_001312893, intron 4 of 5)	-10283.0	NM_001326590	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10880260-4	chr19	10879750	10880750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134142, intron 1 of 3)	intron (NM_134142, intron 1 of 3)	1493.0	NM_134142	68539.0	Mm.251890	NM_134142	ENSMUSG00000034659	Tmem109	1110006I15Rik|AA958958|C77652	transmembrane protein 109	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-92854902-4	chr8	92854401	92855401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173014)	promoter-TSS (NM_173014)	-432.0	NM_173014	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	133.0	302.0	168.5	77.0	231.5	148.0
Merged-chr11-71251506-3	chr11	71251020	71252020	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027858, intron 8 of 12)	RMER21A|LTR|ERV1	-20787.0	NM_001040696	637515.0	Mm.390402	NM_001039680	ENSMUSG00000070390	Nlrp1b	Nalp1b	NLR family, pyrin domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143818182-1	chr5	143817682	143818682	+	1000.0	f0_balb.idr	Intergenic	CpG	-53680.0	NM_013557	15467.0	Mm.389709	NM_013557	ENSMUSG00000029613	Eif2ak1	HCR|Hri	eukaryotic translation initiation factor 2 alpha kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89257066-4	chr6	89256571	89257571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28654.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96302816-4	chr3	96302316	96303316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8847.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	4.0	29.0	11.0	11.0	17.5	16.0
Merged-chr12-79351467-2	chr12	79350967	79351967	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	54116.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	2.5	7.0	5.0	2.0	7.0	8.0
Merged-chr5-27790378-1	chr5	27789878	27790878	+	1000.0	f1_balb.idr	intron (NM_018878, intron 1 of 20)	intron (NM_018878, intron 1 of 20)	1172.0	NM_018878	55982.0	Mm.277190	NM_018878	ENSMUSG00000002221	Paxip1	D5Ertd149e|PTIP	PAX interacting (with transcription-activation domain) protein 1	protein-coding	0.5	1.0	0.0	0.0	2.5	0.5
Merged-chr8-57591469-4	chr8	57590963	57591963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 1 of 11)	intron (NM_001167981, intron 1 of 11)	-60290.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	16.0	41.0	27.0	22.0	30.5	28.0
Merged-chr4-154011812-4	chr4	154011328	154012328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201226)	promoter-TSS (NM_201226)	25.0	NM_201226	72946.0	Mm.260690	NM_201226	ENSMUSG00000029028	Lrrc47	2900010D03Rik|AA960559|mKIAA1185	leucine rich repeat containing 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22858684-2	chr11	22858184	22859184	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	1051.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45690271-1	chr14	45689771	45690771	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-32128.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	0.5	0.0	0.5	3.0	7.0	2.0
Merged-chr1-125470966-4	chr1	125470436	125471436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35209.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139169084-2	chr4	139168584	139169584	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	11571.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	191.5	359.5	207.5	131.5	259.5	256.0
Merged-chr5-137502540-4	chr5	137502021	137503021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028753)	promoter-TSS (NM_028753)	-92.0	NM_028753	74097.0	Mm.290242	NM_028753	ENSMUSG00000029715	Pop7	0610037N12Rik|AI852017|Rpp20	processing of precursor 7, ribonuclease P family, (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-45825380-4	chr1	45824873	45825873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	30207.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120083182-4	chr6	120082677	120083677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10203.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43233743-4	chr5	43233238	43234238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175937, exon 1 of 11)	exon (NM_175937, exon 1 of 11)	275.0	NM_001177379	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45912080-4	chr13	45911572	45912572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	52919.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	9.5	47.0	18.5	23.0	75.5	23.0
Merged-chr19-36768294-4	chr19	36767787	36768787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31683.0	NM_016854	53412.0	Mm.24724	NM_016854	ENSMUSG00000067279	Ppp1r3c	PTG|Ppp1r5	protein phosphatase 1, regulatory (inhibitor) subunit 3C	protein-coding	23.0	10.0	23.5	10.0	4.5	5.5
Merged-chr6-70791412-2	chr6	70790912	70791912	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009075, intron 1 of 8)	intron (NM_009075, intron 1 of 8)	763.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38396951-4	chr18	38396379	38397379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22028.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-178337820-4	chr1	178337344	178338344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016805)	promoter-TSS (NM_016805)	-29.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54398274-4	chr12	54397767	54398767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6949.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82888609-4	chr15	82888114	82889114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114140, intron 1 of 5)	intron (NM_001114140, intron 1 of 5)	9847.0	NR_027799	21378.0	Mm.417272	NR_027799		Tbrg3	TB-11	transforming growth factor beta regulated gene 3	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65863602-4	chr5	65863089	65864089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081105)	promoter-TSS (NM_001081105)	20.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127842510-4	chr7	127842025	127843025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009294, exon 3 of 11)	exon (NM_009294, exon 3 of 11)	717.0	NM_009294	20909.0	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113621229-4	chr5	113620712	113621712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	L4_B_Mam|LINE|RTE-X	22391.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140641622-2	chr5	140641122	140642122	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308040, intron 1 of 12)	intron (NM_001308040, intron 1 of 12)	7409.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91250707-2	chr1	91250207	91251207	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355764, exon 1 of 11)	5' UTR (NM_001355764, exon 1 of 11)	141.0	NM_001355764	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	18.0	44.5	37.0	20.5	48.0	57.0
Merged-chr6-134921610-4	chr6	134921121	134922121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009875, intron 1 of 2)	intron (NM_009875, intron 1 of 2)	1220.0	NM_009875	12576.0	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	105.0	220.0	127.0	77.5	166.5	141.5
Merged-chr6-81958229-3	chr6	81957726	81958726	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177884, exon 17 of 17)	3' UTR (NM_177884, exon 17 of 17)	7723.0	NM_026490	56284.0	Mm.276293	NM_026490	ENSMUSG00000030045	Mrpl19	9030416F12Rik|9130412E02Rik|D6Ertd157e|MRP-L15|RLX1|Rpml15	mitochondrial ribosomal protein L19	protein-coding	14.5	2.0	3.5	0.0	20.5	8.5
Merged-chr10-96331357-4	chr10	96330870	96331870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105163.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-24898055-4	chr4	24897588	24898588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026742)	promoter-TSS (NM_026742)	5.0	NM_026742	68493.0	Mm.204831	NM_026742	ENSMUSG00000028261	Ndufaf4	1110007M04Rik|3000003G13Rik|AW214064	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21690573-2	chr16	21690073	21691073	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001881, intron 1 of 1)	intron (NM_001001881, intron 1 of 1)	4092.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17690517-4	chr12	17690163	17691163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361645)	promoter-TSS (NM_001361645)	-146.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	2.0	15.5	11.0	2.0	20.0	10.5
Merged-chr11-85003669-4	chr11	85003159	85004159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029934, intron 29 of 33)	intron (NM_001029934, intron 29 of 33)	45905.0	NM_007607	12351.0	Mm.1641	NM_007607	ENSMUSG00000000805	Car4	AW456718|Ca4	carbonic anhydrase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65872778-2	chr17	65872278	65873278	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009067, intron 1 of 9)	intron (NM_009067, intron 1 of 9)	12145.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65886313-5	chr17	65885764	65886764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009067)	promoter-TSS (NM_009067)	-509.0	NM_009067	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	63.0	168.5	99.0	65.5	194.5	81.0
Merged-chr16-91044547-4	chr16	91044034	91045034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026110)	promoter-TSS (NM_026110)	-155.0	NR_152264	67367.0	Mm.347	NM_026110	ENSMUSG00000022974	Paxbp1	1810007M14Rik|C21orf66|Gcfc|Gcfc1|Pax3/7bp	PAX3 and PAX7 binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87448286-4	chr11	87447806	87448806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	CpG	20715.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53300572-4	chr11	53300086	53301086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008300)	promoter-TSS (NM_008300)	-107.0	NM_008300	15525.0	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40640048-4	chr19	40639558	40640558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	-19712.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	73.0	192.0	140.5	66.5	148.5	118.5
Merged-chr9-118625786-2	chr9	118625286	118626286	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	19077.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-77238804-4	chr12	77238331	77239331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045554)	promoter-TSS (NR_045554)	92.0	NR_045554	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71613644-4	chr8	71613154	71614154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146211, intron 3 of 11)	intron (NM_146211, intron 3 of 11)	2630.0	NM_146211	234407.0	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	81.0	253.0	166.5	89.0	247.5	177.5
Merged-chr1-165682642-4	chr1	165682151	165683151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	25443.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6623906-4	chr15	6623388	6624388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155272, intron 3 of 6)	intron (NR_155272, intron 3 of 6)	30415.0	NR_155272	102632231.0	Mm.444780	NR_155272		LOC102632231	-	uncharacterized LOC102632231	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-36039598-4	chr12	36039103	36040103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025359, intron 1 of 5)	intron (NM_025359, intron 1 of 5)	2875.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	22.0	53.5	46.5	31.0	94.0	59.0
Merged-chr11-26586756-4	chr11	26586245	26587245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027260, intron 2 of 12)	intron (NM_027260, intron 2 of 12)	7175.0	NM_027260	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	121.5	225.5	181.0	102.0	183.5	136.0
Merged-chr17-25727578-4	chr17	25727104	25728104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145409)	promoter-TSS (NM_145409)	-113.0	NM_028009	106707.0	Mm.24603	NM_028009	ENSMUSG00000041199	Rpusd1	2310051D06Rik|AU019540|Rlucl	RNA pseudouridylate synthase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125334584-4	chr6	125334083	125335083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011324, intron 3 of 11)	L1MB7|LINE|L1	13243.0	NM_011324	20276.0	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	8.0	21.5	17.0	7.0	20.0	15.0
Merged-chr15-64059899-4	chr15	64059395	64060395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360038)	promoter-TSS (NM_001360038)	-131.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	46.5	88.5	138.5	36.5	111.0	105.5
Merged-chr13-23571272-4	chr13	23570770	23571770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178187)	promoter-TSS (NM_178187)	-50.0	NM_178187	319166.0	Mm.261665	NM_178187	ENSMUSG00000069272	Hist1h2ae	1190022L06	histone cluster 1, H2ae	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148167128-2	chr4	148166628	148167628	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_176848)	TTS (NM_176848)	6460.0	NM_176848	230904.0	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	1.0	7.0	0.0	0.0	0.0	0.0
Merged-chr8-126474901-6	chr8	126474366	126475366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159907, exon 1 of 30)	exon (NM_001159907, exon 1 of 30)	199.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124020918-2	chr8	124020418	124021418	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357315, exon 1 of 5)	5' UTR (NM_001357315, exon 1 of 5)	138.0	NM_001357315	102162.0	Mm.291777	NM_133966	ENSMUSG00000038697	Taf5l	1110005N04Rik|AI849020	TATA-box binding protein associated factor 5 like	protein-coding	13.0	25.0	23.5	1.5	35.0	16.5
Merged-chr3-58690739-4	chr3	58690237	58691237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009174, intron 1 of 1)	intron (NM_009174, intron 1 of 1)	1651.0	NM_009174	20439.0	Mm.2847	NM_009174	ENSMUSG00000036432	Siah2	AA415433|Sinh2	siah E3 ubiquitin protein ligase 2	protein-coding	14.5	47.5	17.0	14.0	61.0	17.0
Merged-chr7-43682327-2	chr7	43681827	43682827	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-8091.0	NM_174866	317653.0	Mm.247377	NM_174866	ENSMUSG00000044737	Klk14	GK14	kallikrein related-peptidase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31251375-4	chr14	31250836	31251836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360624)	promoter-TSS (NM_001360624)	-21.0	NR_153760	71838.0	Mm.5348	NM_027949	ENSMUSG00000021902	Phf7	1700006H01Rik|1700010P14Rik|AI427892|AW555949	PHD finger protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12027979-4	chr15	12027487	12028487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31980.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116893112-4	chr3	116892611	116893611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009146, intron 9 of 16)	MTD|LTR|ERVL-MaLR	31431.0	NM_009146	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	3.0	5.5	8.5	7.5	8.0	7.0
Merged-chr9-123678708-2	chr9	123678208	123679208	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_139142, exon 1 of 11)	exon (NM_139142, exon 1 of 11)	124.0	NM_139142	102680.0	Mm.440867	NM_139142	ENSMUSG00000036814	Slc6a20a	A730081N20Rik|AU022428|Xt3s1|Xtrp3s1	solute carrier family 6 (neurotransmitter transporter), member 20A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34264166-4	chr17	34263683	34264683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207105, intron 1 of 5)	intron (NM_207105, intron 1 of 5)	956.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	90.0	354.5	209.5	117.5	343.5	205.0
Merged-chr4-6366496-4	chr4	6365992	6366992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	812.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-29960382-4	chr14	29959875	29960875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A1-int|LTR|ERVL-MaLR	-8005.0	NM_019979	80795.0	Mm.104491	NM_019979	ENSMUSG00000042682	Selenok	1110001C03Rik|AA673253|HSPC030|Hsp30|Selk	selenoprotein K	protein-coding	2.5	7.5	3.0	9.0	3.0	4.5
Merged-chr8-125600211-4	chr8	125599712	125600712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015535, intron 2 of 2)	ORR1E|LTR|ERVL-MaLR	15574.0	NR_015535	75930.0	Mm.195663	NR_015535	ENSMUSG00000110629	4930567H12Rik	4930579P07Rik	RIKEN cDNA 4930567H12 gene	ncRNA	102.5	170.0	165.0	65.5	159.0	124.0
Merged-chr11-29846753-3	chr11	29846264	29847264	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 10 of 41)	Lx2|LINE|L1	-21096.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	0.0	2.0	1.0	0.0	0.0	0.5
Merged-chr14-79451821-4	chr14	79451318	79452318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034882)	promoter-TSS (NM_001034882)	-17.0	NM_001034882	432879.0	Mm.308666	NM_001034882	ENSMUSG00000075502	Kbtbd6	EG432879|Gm5465|Zbtbd6	kelch repeat and BTB (POZ) domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95051636-4	chr4	95051121	95052121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010591, exon 1 of 1)	5' UTR (NM_010591, exon 1 of 1)	601.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	81.0	238.5	153.5	112.5	158.5	117.0
Merged-chr2-101881982-4	chr2	101881475	101882475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	1052.0	NM_001355625	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	16.0	18.5	30.5	10.0	14.0	18.5
Merged-chr12-17657769-4	chr12	17657328	17658328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-32981.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	42.5	121.0	51.0	86.0	97.5	58.0
Merged-chr7-113369361-4	chr7	113368860	113369860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133700)	promoter-TSS (NM_133700)	-21.0	NM_133700	68815.0	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	13.0	63.0	23.5	23.0	43.5	32.5
Merged-chr5-135934678-4	chr5	135934171	135935171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018871)	promoter-TSS (NM_018871)	-30.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101008791-4	chr11	101008285	101009285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243051)	promoter-TSS (NM_001243051)	-667.0	NM_016920	11975.0	Mm.340818	NM_016920	ENSMUSG00000019302	Atp6v0a1	AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1	ATPase, H+ transporting, lysosomal V0 subunit A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55578472-4	chr14	55577978	55578978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011189)	promoter-TSS (NM_011189)	-16.0	NM_011189	19186.0	Mm.830	NM_011189	ENSMUSG00000022216	Psme1	AW413925|PA28a	proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-33249050-4	chr6	33248551	33249551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009148)	promoter-TSS (NM_009148)	-77.0	NM_009148	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38470620-4	chr15	38470125	38471125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	19922.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55666411-4	chr1	55665891	55666891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	260445.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	24.0	44.0	26.0	3.5	12.0	7.0
Merged-chr11-68864898-4	chr11	68864343	68865343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11712.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137787317-4	chr5	137786824	137787824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144913)	promoter-TSS (NM_144913)	-7.0	NM_001360023	381678.0	Mm.332765	NM_001005426	ENSMUSG00000037108	Zcwpw1	Gm1053	zinc finger, CW type with PWWP domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-11149328-4	chr10	11148852	11149852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172937)	promoter-TSS (NM_172937)	-78.0	NM_001077707	268281.0	Mm.133101	NM_172937	ENSMUSG00000090112	Shprh	2610103K11Rik|AA450458|AU024614|BC006883|D230017O13Rik|E130018M05	SNF2 histone linker PHD RING helicase	protein-coding	22.0	36.0	40.5	19.5	19.0	35.0
Merged-chr7-120940513-3	chr7	120939999	120940999	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025298, exon 18 of 21)	exon (NM_025298, exon 18 of 21)	22755.0	NM_001164096	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-40800540-2	chr3	40800040	40801040	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045576, intron 1 of 15)	CpG	589.0	NR_045576	20873.0	Mm.3794	NM_011495	ENSMUSG00000025758	Plk4	1700028H20|AI385771|Sak|Stk18	polo like kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-122961577-2	chr4	122961077	122962077	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029662)	promoter-TSS (NM_029662)	-389.0	NM_029662	76574.0	Mm.331842	NM_029662	ENSMUSG00000028655	Mfsd2a	1700018O18Rik|Mfsd2|NLS1	major facilitator superfamily domain containing 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129198646-4	chr2	129198097	129199097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159593)	promoter-TSS (NM_001159593)	-176.0	NM_015747	20515.0	Mm.272675	NM_015747	ENSMUSG00000027397	Slc20a1	AI607883|Glvr-1|Glvr1	solute carrier family 20, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77794698-4	chr18	77794211	77795211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152167, exon 3 of 3)	non-coding (NR_152167, exon 3 of 3)	161.0	NM_013831	19201.0	Mm.57174	NM_013831	ENSMUSG00000025429	Pstpip2	MAYP|cmo	proline-serine-threonine phosphatase-interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113009788-4	chr5	113009350	113010350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	5688.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	0.0	0.0	0.5	0.0	0.0	1.5
Merged-chr1-165663917-4	chr1	165663425	165664425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178593, intron 2 of 6)	intron (NM_178593, intron 2 of 6)	-29384.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60910918-4	chr2	60910404	60911404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-29466.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79408901-4	chr15	79408380	79409380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5577.0	NM_172608	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	22.5	66.5	34.0	46.5	100.5	73.5
Merged-chr5-108132679-4	chr5	108132179	108133179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361467)	promoter-TSS (NM_001361467)	-59.0	NM_001361467	73130.0	Mm.363960	NM_028876	ENSMUSG00000063406	Tmed5	3110020O18Rik|4432412D15Rik|p24gamma2	transmembrane p24 trafficking protein 5	protein-coding	5.0	8.0	2.0	6.0	8.0	9.0
Merged-chr15-94541210-2	chr15	94540710	94541710	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172437, intron 1 of 8)	intron (NM_172437, intron 1 of 8)	2297.0	NM_172437	78895.0	Mm.34344	NM_172437	ENSMUSG00000033356	Pus7l	3000003F02Rik	pseudouridylate synthase 7-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80207380-4	chr17	80206873	80207873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_036615)	promoter-TSS (NR_036615)	-68.0	NM_001195485	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69412557-1	chr11	69412057	69413057	+	1000.0	f1_balb.idr	intron (NM_001017426, intron 1 of 22)	MIRb|SINE|MIR	1118.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	25.5	77.5	63.0	18.0	33.0	30.0
Merged-chr2-167009321-2	chr2	167008821	167009821	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-5992.0	NM_153065	228889.0	Mm.295031	NM_153065	ENSMUSG00000017999	Ddx27	C86129	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63215363-4	chr4	63214877	63215877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025685)	promoter-TSS (NM_025685)	-35.0	NM_025685	373864.0	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-21462824-4	chr12	21462307	21463307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45371.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	41.0	88.0	27.5	18.5	51.0	27.0
Merged-chr6-91878027-4	chr6	91877583	91878583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172730)	promoter-TSS (NM_172730)	30.0	NM_172730	232236.0	Mm.234879	NM_172730	ENSMUSG00000034083	Ccdc174	C130022K22Rik	coiled-coil domain containing 174	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71493932-4	chr6	71493439	71494439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308303)	promoter-TSS (NM_001308303)	62.0	NM_001308303	22644.0	Mm.422969	NM_009543	ENSMUSG00000052656	Rnf103	AW146237|AW212918|Zfp103|kf-1	ring finger protein 103	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69089510-4	chr8	69088997	69089997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153054)	promoter-TSS (NM_153054)	-275.0	NM_153054	110877.0	Mm.19301	NM_153054	ENSMUSG00000036330	Slc18a1	4832416I10Rik|Vat1|Vmat1	solute carrier family 18 (vesicular monoamine), member 1	protein-coding	62.5	126.5	99.0	70.0	160.0	91.5
Merged-chr11-68853170-4	chr11	68852657	68853657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023668)	promoter-TSS (NM_023668)	-26.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91650107-4	chr2	91649595	91650595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033451)	promoter-TSS (NM_001033451)	-23.0	NR_027372	228359.0	Mm.22413	NM_146124	ENSMUSG00000027247	Arhgap1	B230365D05Rik|C76222|Cdc42GAP|p50rhoGAP	Rho GTPase activating protein 1	protein-coding	12.5	5.0	2.5	3.5	3.0	8.0
Merged-chr11-77763286-4	chr11	77762823	77763823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-13912.0	NM_001291213	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-14842596-4	chr9	14842106	14843106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17604.0	NM_001310734	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117947162-1	chr11	117946662	117947662	+	1000.0	f0_c57.idr	Intergenic	Intergenic	22204.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161896256-4	chr1	161895764	161896764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19582.0	NM_001357402	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	8.5	13.5	3.5	10.0	6.5	1.0
Merged-chr8-120668222-4	chr8	120667735	120668735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293559)	promoter-TSS (NM_001293559)	10.0	NM_009941	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146617136-2	chr6	146616640	146617640	+	1000.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_026281, intron 6 of 11)	L1MC4|LINE|L1	17452.0	NM_026281	67623.0	Mm.278037	NM_026281	ENSMUSG00000040234	Tm7sf3	2010003B14Rik|NARP1	transmembrane 7 superfamily member 3	protein-coding	3.5	11.0	8.5	36.5	91.5	65.0
Merged-chr11-97144159-2	chr11	97143659	97144659	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198100, intron 6 of 8)	intron (NM_198100, intron 6 of 8)	2260.0	NR_106094	102466822.0		NR_106094	ENSMUSG00000099286	Mir7235	Gm27986|mmu-mir-7235	microRNA 7235	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39725554-4	chr6	39725053	39726053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139294)	promoter-TSS (NM_139294)	-90.0	NM_139294	109880.0	Mm.245513	NM_139294	ENSMUSG00000002413	Braf	9930012E13Rik|AA120551|AA387315|AA473386|B-raf|Braf-2|Braf2|C230098H17|C87398|D6Ertd631e	Braf transforming gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41933384-4	chr19	41932887	41933887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164561)	promoter-TSS (NM_001164561)	-58.0	NM_001360679	74168.0	Mm.20387	NM_023740	ENSMUSG00000025157	Zdhhc16	1500015N03Rik|Aph2	zinc finger, DHHC domain containing 16	protein-coding	10.0	28.0	30.5	12.0	28.0	11.5
Merged-chr14-56903168-4	chr14	56902659	56903659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029498, exon 3 of 25)	exon (NM_029498, exon 3 of 25)	16316.0	NM_001360643	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160620974-2	chr2	160620474	160621474	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24923.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32951005-4	chr19	32950503	32951503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	193426.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-81480547-4	chr17	81480050	81481050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	257837.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-10390793-4	chr12	10390281	10391281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023697)	promoter-TSS (NM_023697)	1.0	NM_023697	105014.0	Mm.119343	NM_023697	ENSMUSG00000020621	Rdh14	3110030G19Rik|AW215439|PAN2	retinol dehydrogenase 14 (all-trans and 9-cis)	protein-coding	35.0	88.5	68.5	56.0	74.5	47.5
Merged-chr18-70472457-4	chr18	70471955	70472955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289649)	promoter-TSS (NM_001289649)	1.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	35.0	90.5	46.0	15.5	25.5	31.5
Merged-chr8-84068836-4	chr8	84068330	84069330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009055, intron 1 of 20)	intron (NM_009055, intron 1 of 20)	1994.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	49.0	128.0	82.0	55.0	167.5	119.0
Merged-chr14-121997017-4	chr14	121996519	121997519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 7 of 8)	intron (NM_026861, intron 7 of 8)	-31826.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	3.5	31.0	31.0	6.0	20.5	17.0
Merged-chr10-117793633-2	chr10	117793133	117794133	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134010)	promoter-TSS (NM_134010)	-928.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84802271-2	chr2	84801771	84802771	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019949, intron 1 of 3)	intron (NM_019949, intron 1 of 3)	3443.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-51545412-4	chr6	51544899	51545899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361577, intron 1 of 6)	intron (NM_001361577, intron 1 of 6)	106.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84355445-4	chr18	84354942	84355942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 4 of 8)	intron (NM_001033341, intron 4 of 8)	234062.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	0.0	5.0	6.0	0.0	0.0	2.0
Merged-chr10-127535979-4	chr10	127535483	127536483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1424.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	7.0	3.0	0.0	5.0	0.0	1.0
Merged-chr14-21500673-4	chr14	21500176	21501176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017479, intron 1 of 16)	CpG	891.0	NM_017479	54169.0	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143628081-4	chr7	143627567	143628567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175649)	promoter-TSS (NM_175649)	-3.0	NR_153818	414103.0	Mm.446579	NR_153817		E230032D23Rik	-	RIKEN cDNA E230032D23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113306614-4	chr6	113306140	113307140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282126)	promoter-TSS (NM_001282126)	-497.0	NM_030178	78783.0	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5870516-4	chr13	5870019	5871019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011803)	TTS (NM_011803)	9030.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-106003285-4	chr2	106002778	106003778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033993, exon 1 of 4)	non-coding (NR_033993, exon 1 of 4)	271.0	NM_026992	99349.0	Mm.25661	NM_026992	ENSMUSG00000027166	Dnajc24	1700030A21Rik|2610027M02Rik|AV066965|AW240712|Dph4|MmDjC7|Zcsl3	DnaJ heat shock protein family (Hsp40) member C24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121804840-1	chr11	121804340	121805340	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-25378.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80737508-2	chr10	80737008	80738008	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007460, intron 1 of 30)	MLT1D|LTR|ERVL-MaLR	4767.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5444975-4	chr11	5444464	5445464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080924)	promoter-TSS (NM_001080924)	-117.0	NM_001080924	407821.0	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	19.5	48.0	46.0	40.0	55.0	42.5
Merged-chr2-166710066-4	chr2	166709561	166710561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	3771.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11452781-4	chr8	11452280	11453280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25149.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30650909-4	chr5	30650385	30651385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175675, intron 1 of 5)	intron (NM_175675, intron 1 of 5)	2946.0	NM_175675	74919.0	Mm.247985	NM_175675	ENSMUSG00000029175	Slc35f6	4930471M23Rik|5730478O19Rik|ANT2BP|P40|Tango9	solute carrier family 35, member F6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-44266663-4	chr12	44266162	44267162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2492.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	6.5	40.0	5.5	0.5	4.0	7.0
Merged-chr7-102250230-3	chr7	102249745	102250745	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019566)	promoter-TSS (NM_019566)	-127.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	50.5	134.0	92.0	36.5	86.0	68.5
Merged-chr14-122107052-4	chr14	122106576	122107576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015586)	promoter-TSS (NR_015586)	-6.0	NM_080556	68059.0	Mm.275191	NM_080556	ENSMUSG00000025544	Tm9sf2	1500001N15Rik|AA536814|D14Ertd64e|P76	transmembrane 9 superfamily member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92972188-4	chr1	92971700	92972700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001104529)	promoter-TSS (NM_001104529)	-919.0	NM_001104529	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38576188-4	chr18	38575678	38576678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25090.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113377856-6	chr6	113377371	113378371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133932)	promoter-TSS (NM_133932)	-242.0	NM_026552	68089.0	Mm.289306	NM_026552	ENSMUSG00000079426	Arpc4	20kDa|5330419I20Rik|AI327076|p20-Arc	actin related protein 2/3 complex, subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-108369413-4	chr4	108368916	108369916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099303, intron 2 of 2)	intron (NM_001099303, intron 2 of 2)	14239.0	NM_001099303	545667.0	Mm.380025	NM_001099303	ENSMUSG00000059816	Fam159a	Shisal2a	family with sequence similarity 159, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-25222905-4	chr5	25222447	25223447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144908)	promoter-TSS (NM_144908)	75.0	NM_144908	231050.0	Mm.246718	NM_144908	ENSMUSG00000038072	Galnt11	A430075I06Rik|AI648252|E430002F06Rik	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100168802-4	chr12	100168314	100169314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9161.0	NM_183155	217827.0	Mm.224076	NM_183155	ENSMUSG00000021179	Nrde2	6720454P05Rik	nrde-2 necessary for RNA interference, domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45196693-4	chr2	45196187	45197187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79245.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52624276-4	chr13	52623769	52624769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 6 of 13)	intron (NM_011518, intron 6 of 13)	27387.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-124425688-4	chr9	124425166	124426166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_027950)	TTS (NR_027950)	1879.0	NR_015516	75135.0	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-82866264-4	chr7	82865780	82866780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1053.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	11.5	46.5	29.5	5.0	34.0	11.0
Merged-chr17-5591788-4	chr17	5591292	5592292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	99192.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64022086-4	chr9	64021589	64022589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008542)	promoter-TSS (NM_008542)	-30.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97379557-3	chr6	97379062	97380062	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	intron (NM_145148, intron 6 of 23)	79724.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-30529797-2	chr15	30529297	30530297	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	357204.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50235362-2	chr11	50234862	50235862	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145926)	TTS (NM_145926)	3117.0	NR_105884	102466765.0		NR_105884	ENSMUSG00000098474	Mir6919	Gm27889|mmu-mir-6919	microRNA 6919	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-94557635-4	chr15	94557153	94558153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029926, intron 6 of 11)	intron (NM_029926, intron 6 of 11)	13993.0	NM_029926	266632.0	Mm.422858	NM_029926	ENSMUSG00000059883	Irak4	8430405M07Rik|9330209D03Rik|IRAK-4|NY-REN-64	interleukin-1 receptor-associated kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62650537-2	chr10	62650037	62651037	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358820)	promoter-TSS (NM_001358820)	681.0	NM_001358819	94213.0	Mm.114116	NM_053183	ENSMUSG00000020076	Ddx50	4933429B04Rik|8430408E17Rik|GU2|RH-II	DEAD (Asp-Glu-Ala-Asp) box polypeptide 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98178260-4	chr7	98177736	98178736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007602)	promoter-TSS (NM_007602)	38.0	NM_007602	12337.0	Mm.326847	NM_007602	ENSMUSG00000035547	Capn5	nCL-3	calpain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-82974331-4	chr9	82973844	82974844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081216, intron 4 of 39)	(CCG)n|Simple_repeat|Simple_repeat	1145.0	NM_001081216	83946.0	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99381794-4	chr5	99381281	99382281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-128854.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13246891-4	chr9	13246417	13247417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025534)	promoter-TSS (NM_025534)	-39.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124859000-2	chr6	124858500	124859500	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001355257, exon 6 of 6)	exon (NM_001355257, exon 6 of 6)	-1313.0	NM_013534	14789.0	Mm.35708	NM_013534	ENSMUSG00000023191	P3h3	BC016431|Grcb|Leprel2	prolyl 3-hydroxylase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55801788-4	chr16	55801292	55802292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20346.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113419349-4	chr6	113418867	113419867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346511)	promoter-TSS (NM_001346511)	-19.0	NM_001346511	101122.0	Mm.31204	NM_001033204	ENSMUSG00000051169	Rpusd3	AI527266	RNA pseudouridylate synthase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-52094796-4	chr11	52094315	52095315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4009.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142458136-4	chr7	142457629	142458629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-2683.0	NM_001271510	16985.0	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	11.5	26.5	6.5	4.5	13.5	2.5
Merged-chr11-53763002-4	chr11	53762504	53763504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_106131)	TTS (NR_106131)	650.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79498829-4	chr8	79498332	79499332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99364.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47250155-4	chr17	47249668	47250668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 4 of 19)	intron (NM_001097623, intron 4 of 19)	19938.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	14.5	29.5	27.5	31.0	36.0	27.0
Merged-chr11-46314904-4	chr11	46314430	46315430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-2071.0	NM_001252459	76884.0	Mm.154358	NM_133769	ENSMUSG00000020340	Cyfip2	1500004I01Rik|6430511D02Rik|AA930218|AU022376|Pir121|mKIAA1168	cytoplasmic FMR1 interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75834413-4	chr14	75833896	75834896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1M8|LINE|L1	10568.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126566439-4	chr7	126565890	126566890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146200)	promoter-TSS (NM_146200)	-24.0	NM_146200	56347.0	Mm.22776	NM_146200	ENSMUSG00000030738	Eif3c	110kDa|3230401O13Rik|Eif3s8|NIPIL(A3)|NipilA3|Xs|Xsl	eukaryotic translation initiation factor 3, subunit C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32079305-4	chr16	32078790	32079790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177326)	promoter-TSS (NM_177326)	52.0	NM_177326	224105.0	Mm.234204	NM_177326	ENSMUSG00000022781	Pak2	5330420P17Rik|A130002K10Rik|AI836325|D16Ertd269e|PAK-2|mKIAA4182	p21 (RAC1) activated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-44777629-4	chr17	44777118	44778118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178652, intron 1 of 11)	CpG	452.0	NM_178652	109115.0	Mm.431327	NM_178652	ENSMUSG00000038954	Supt3	2310066G22Rik|AI315192|SPT3|SPT3L|Supt3h	suppressor of Ty 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-38658592-4	chr13	38658126	38659126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025380, intron 1 of 3)	CpG	402.0	NM_025380	66143.0	Mm.490319	NM_025380	ENSMUSG00000001707	Eef1e1	1110003A02Rik	eukaryotic translation elongation factor 1 epsilon 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45197558-4	chr2	45197030	45198030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80088.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27327192-4	chr2	27326675	27327675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 2 of 29)	intron (NR_133905, intron 2 of 29)	-79872.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-82975636-7	chr9	82975110	82976110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081216)	promoter-TSS (NM_001081216)	-121.0	NM_001081216	83946.0	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86202065-4	chr15	86201503	86202503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12456.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6118067-4	chr19	6117620	6118620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133678, exon 1 of 2)	exon (NM_133678, exon 1 of 2)	466.0	NM_133678	66406.0	Mm.303924	NM_133678	ENSMUSG00000024790	Sac3d1	2410004C24Rik|AU015683|shd1	SAC3 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149170818-4	chr4	149170330	149171330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4125.0	NM_001081274	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14324144-2	chr2	14323644	14324644	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 25 of 29)	RMER3D-int|LTR|ERVK	63141.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-55196570-4	chr15	55196088	55197088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037937, intron 4 of 8)	intron (NM_001037937, intron 4 of 8)	63152.0	NM_001037937	97998.0	Mm.295397	NM_145470	ENSMUSG00000022419	Deptor	Depdc6	DEP domain containing MTOR-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93478924-4	chr1	93478414	93479414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159718)	promoter-TSS (NM_001159718)	3.0	NM_133808	110611.0	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	2.0	1.0	7.5	0.5	1.5	3.5
Merged-chr2-173769375-4	chr2	173768870	173769870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019806, intron 2 of 5)	intron (NM_019806, intron 2 of 5)	31799.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-42299574-4	chr6	42299073	42300073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013491, exon 10 of 23)	exon (NM_013491, exon 10 of 23)	12888.0	NM_013491	12723.0	Mm.386757	NM_013491	ENSMUSG00000029862	Clcn1	Clc-1|Clc1|SMCC1|adr|mto|myotonia|nmf355	chloride channel, voltage-sensitive 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46574403-4	chr18	46573912	46574912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_173394, exon 1 of 3)	5' UTR (NM_173394, exon 1 of 3)	121.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-34958606-4	chr4	34958170	34959170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 3 of 3)	intron (NM_178061, intron 3 of 3)	-47189.0	NR_040652	73696.0	Mm.1361	NR_040652	ENSMUSG00000085824	Platr9	2410114N07Rik	pluripotency associated transcript 9	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-75297665-4	chr4	75297175	75298175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-19383.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12833773-4	chr19	12833271	12834271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001361971)	TTS (NM_001361971)	-28006.0	NM_146702	258697.0	Mm.223132	NM_146702	ENSMUSG00000046272	Olfr1444	MOR202-4	olfactory receptor 1444	protein-coding	23.0	48.5	31.0	55.5	133.5	56.0
Merged-chr10-80931137-2	chr10	80930637	80931637	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008655, exon 3 of 4)	exon (NM_008655, exon 3 of 4)	1046.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-20154992-4	chr3	20154499	20155499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013755, exon 1 of 7)	exon (NM_013755, exon 1 of 7)	117.0	NM_001355261	27357.0	Mm.6375	NM_013755	ENSMUSG00000019528	Gyg	AU017667|GN1|Gyg1	glycogenin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79993070-4	chr11	79992583	79993583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163018)	promoter-TSS (NM_001163018)	-23.0	NM_001163018	52615.0	Mm.283410	NM_199196	ENSMUSG00000017548	Suz12	2610028O16Rik|AI195385|AU016842|AW536442|D11Ertd530e|mKIAA0160	SUZ12 polycomb repressive complex 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102459111-4	chr15	102458621	102459621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170911)	promoter-TSS (NM_001170911)	-49.0	NM_001170911	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98149733-4	chr11	98149265	98150265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028149)	promoter-TSS (NM_028149)	-149.0	NM_028149	72194.0	Mm.218350	NM_028149	ENSMUSG00000020883	Fbxl20	2610511F20Rik|4632423N09Rik|AI849362|AL117906|C86145|Fbl2|Scr|mKIAA4147	F-box and leucine-rich repeat protein 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-94886927-4	chr3	94886443	94887443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008945)	promoter-TSS (NM_008945)	15.0	NM_008945	19172.0	Mm.368	NM_008945	ENSMUSG00000005779	Psmb4	Pros-27	proteasome (prosome, macropain) subunit, beta type 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35265361-4	chr9	35264855	35265855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286604, intron 2 of 9)	intron (NM_001286604, intron 2 of 9)	2450.0	NM_175411	109229.0	Mm.24197	NM_175411	ENSMUSG00000050471	Fam118b	2310022O21Rik|2700018L24Rik|C030004A17Rik|Ppp4r1l	family with sequence similarity 118, member B	protein-coding	11.5	21.5	23.5	1.5	7.0	9.0
Merged-chr16-11461723-4	chr16	11461218	11462218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	56070.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167623177-2	chr2	167622677	167623677	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023230, intron 1 of 3)	intron (NM_023230, intron 1 of 3)	8828.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-86110253-4	chr3	86109750	86110750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082414, intron 7 of 14)	intron (NM_001082414, intron 7 of 14)	25816.0	NM_001082414	27059.0	Mm.2454	NM_012059	ENSMUSG00000028082	Sh3d19	AW011754|Kryn	SH3 domain protein D19	protein-coding	12.5	24.0	14.0	11.0	31.0	8.0
Merged-chr2-130424309-4	chr2	130423797	130424797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030559)	promoter-TSS (NM_030559)	-9.0	NM_178762	319513.0	Mm.482539	NM_178762	ENSMUSG00000037773	Pced1a	A930025D01Rik|AI480484|Fam113a	PC-esterase domain containing 1A	protein-coding	249.0	568.0	369.0	272.0	545.0	420.5
Merged-chr13-67108697-4	chr13	67108192	67109192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256052, intron 2 of 6)	intron (NM_001256052, intron 2 of 6)	5336.0	NM_001256052	432770.0	Mm.124021	NM_001256052	ENSMUSG00000074824	Rslcan18	mszf51	regulator of sex-limitation candidate 18	protein-coding	7.5	38.0	41.0	11.0	41.5	34.0
Merged-chr18-46434064-4	chr18	46433548	46434548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31768.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0.0	11.5	7.0	3.0	6.0	2.0
Merged-chr4-135873937-4	chr4	135873439	135874439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026383)	promoter-TSS (NM_026383)	-93.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	69.5	104.5	132.0	74.0	159.5	157.5
Merged-chr17-56256680-4	chr17	56256172	56257172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010192)	promoter-TSS (NM_010192)	-121.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69661359-2	chr11	69660859	69661859	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011900, intron 1 of 6)	B2_Mm2|SINE|B2	1290.0	NR_125917	24070.0	Mm.89579	NM_011900	ENSMUSG00000018761	Mpdu1	LEC35|SL15|Supl15h	mannose-P-dolichol utilization defect 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-72284358-4	chr1	72283883	72284883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175564)	promoter-TSS (NM_175564)	10.0	NM_175564	271711.0	Mm.80318	NM_175564	ENSMUSG00000026188	Tmem169	A830020B06Rik	transmembrane protein 169	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-65227882-4	chr1	65227378	65228378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310624, intron 12 of 41)	intron (NM_001310624, intron 12 of 41)	41193.0	NM_011086	18711.0	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE type zinc finger containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70655072-4	chr11	70654561	70655561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011072)	promoter-TSS (NM_011072)	-411.0	NM_011072	18643.0	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	10.5	3.5	7.5	8.0	22.5	16.0
Merged-chr17-24414596-4	chr17	24414099	24415099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009070)	promoter-TSS (NM_009070)	-47.0	NM_001357626	19826.0	Mm.1951	NM_009070	ENSMUSG00000034681	Rnps1	-	ribonucleic acid binding protein S1	protein-coding	80.0	247.0	161.0	107.5	239.0	179.5
Merged-chr9-22156304-2	chr9	22155804	22156804	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001082532)	promoter-TSS (NM_001082532)	-542.0	NM_001082532	66268.0	Mm.28924	NM_025457	ENSMUSG00000010607	Pigyl	1810008A14Rik|PIG-Y|Pigy	phosphatidylinositol glycan anchor biosynthesis, class Y-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-63430093-4	chr10	63429595	63430595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177612)	promoter-TSS (NM_177612)	-3.0	NM_177612	216033.0	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5922634-2	chr19	5922134	5923134	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026772, intron 1 of 1)	MIR|SINE|MIR	2182.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	0.0	6.5	0.0	0.5	0.0	0.0
Merged-chr9-35211084-4	chr9	35210582	35211582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026130)	promoter-TSS (NM_026130)	-27.0	NM_001291448	235169.0	Mm.138512	NM_172291	ENSMUSG00000039048	Foxred1	BC024806|TEG-23|Tex23	FAD-dependent oxidoreductase domain containing 1	protein-coding	61.0	175.0	167.0	67.0	131.0	108.0
Merged-chr9-96530829-4	chr9	96530332	96531332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52157.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-92376489-2	chr2	92375989	92376989	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145122, intron 2 of 10)	intron (NM_145122, intron 2 of 10)	1250.0	NM_145122	18633.0	Mm.202782	NM_145122	ENSMUSG00000027222	Pex16	-	peroxisomal biogenesis factor 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61177129-4	chr18	61176644	61177644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178277)	promoter-TSS (NM_178277)	-94.0	NM_134134	106894.0	Mm.22574	NM_134134	ENSMUSG00000024622	Hmgxb3	2510002C16Rik|A630042L21Rik|AI413166|mKIAA0194	HMG box domain containing 3	protein-coding	63.0	153.5	80.0	65.5	96.5	70.5
Merged-chr2-73051845-2	chr2	73051345	73052345	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71399.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120305262-4	chr11	120304758	120305758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	42155.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	0.0	1.0	0.0	0.0	1.0	0.0
Merged-chr17-5524193-2	chr17	5523693	5524693	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	MMERVK10D3_I-int|LTR|ERVK	31593.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110888311-4	chr12	110887809	110888809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081057)	promoter-TSS (NM_001081057)	836.0	NM_027223	67236.0	Mm.287157	NM_026048	ENSMUSG00000021276	Cinp	1810047K05Rik|2810452K22Rik	cyclin-dependent kinase 2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11176401-4	chr16	11175885	11176885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145931)	promoter-TSS (NM_145931)	8.0	NR_027502	106205.0	Mm.226860	NM_145931	ENSMUSG00000037965	Zc3h7a	A430104C18Rik|AI447294|AW556219|HSPC055|Zc3h7|Zc3hdc7	zinc finger CCCH type containing 7 A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34598446-2	chr17	34597946	34598946	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_073173, exon 3 of 10)	non-coding (NR_073173, exon 3 of 10)	596.0	NR_073173	11596.0	Mm.3383	NM_007425	ENSMUSG00000015452	Ager	RAGE	advanced glycosylation end product-specific receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-49743788-4	chr2	49743291	49744291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008449, intron 19 of 25)	MTD|LTR|ERVL-MaLR	-43895.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68275059-4	chr10	68274527	68275527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	3699.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	12.0	62.5	35.0	17.0	56.5	25.5
Merged-chr5-4530476-4	chr5	4529941	4530941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	227775.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131019558-4	chr1	131019072	131020072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010548)	promoter-TSS (NM_010548)	-273.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21889616-4	chr10	21889158	21890158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 1 of 13)	intron (NM_001161845, intron 1 of 13)	7474.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	31.0	29.5	37.5	23.0	49.5	35.0
Merged-chr14-70069417-2	chr14	70068917	70069917	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8028.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-89462024-4	chr10	89461505	89462505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009108, intron 7 of 8)	intron (NM_009108, intron 7 of 8)	-18038.0	NM_001033331	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	1.5	0.0	0.5	0.0	0.0	0.0
Merged-chr2-130629948-4	chr2	130629424	130630424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001255993, exon 1 of 7)	5' UTR (NM_001255993, exon 1 of 7)	103.0	NM_198176	380601.0	Mm.27090	NM_198176	ENSMUSG00000079043	Fastkd5	C78212|mKIAA1792	FAST kinase domains 5	protein-coding	83.5	219.0	216.5	114.0	224.5	208.5
Merged-chr9-83834572-4	chr9	83834050	83835050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009445)	promoter-TSS (NM_009445)	-139.0	NM_009445	22137.0	Mm.1904	NM_009445	ENSMUSG00000038379	Ttk	AL022661|Esk1|Mps1|PYT|esk	Ttk protein kinase	protein-coding	75.5	198.0	123.0	43.5	104.0	85.5
Merged-chr7-96476372-2	chr7	96475872	96476872	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 3 of 32)	MTE2a|LTR|ERVL-MaLR	-134408.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	10.0	12.5	20.0	11.5	24.0	12.0
Merged-chr2-120632189-4	chr2	120631698	120632698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22603.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	3.5	4.5	7.5	1.0	10.0	4.0
Merged-chr10-60344323-4	chr10	60343819	60344819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 37 of 68)	intron (NM_001252635, intron 37 of 68)	-2532.0	NM_001159572	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5625505-4	chr19	5624995	5625995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-11995.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	0.0	1.0	1.0	1.5	3.5	1.5
Merged-chr4-56070885-4	chr4	56070382	56071382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR78|LTR|ERV1	-538407.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-107949833-4	chr5	107949334	107950334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	MTE2a|LTR|ERVL-MaLR	37243.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80417366-2	chr10	80416866	80417866	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164151, exon 10 of 19)	exon (NM_001164151, exon 10 of 19)	-10545.0	NM_025650	66594.0	Mm.379119	NM_025650	ENSMUSG00000020163	Uqcr11	0710008D09Rik|AL022707|Uqcr	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44267066-4	chr19	44266556	44267556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-26620.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	2.0	13.5	14.0	0.0	5.5	3.0
Merged-chr10-128487355-2	chr10	128486855	128487855	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001114096, exon 27 of 29)	exon (NM_001114096, exon 27 of 29)	5654.0	NM_001317220	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95526798-4	chr3	95526298	95527298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001267695)	promoter-TSS (NM_001267695)	12.0	NM_001267695	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-32173960-1	chr14	32173460	32174460	+	1000.0	f0_balb.idr	intron (NM_001033988, intron 6 of 9)	RSINE1|SINE|B4	8171.0	NM_019744	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34057426-3	chr17	34056919	34057919	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001317722, exon 36 of 65)	exon (NM_001317722, exon 36 of 65)	18281.0	NM_001317722	12815.0	Mm.20230	NM_009926	ENSMUSG00000024330	Col11a2	-	collagen, type XI, alpha 2	protein-coding	117.5	172.0	158.0	8.0	15.0	7.5
Merged-chr13-21169841-4	chr13	21169340	21170340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10091.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	28.0	37.0	32.5	33.5	64.5	14.0
Merged-chr13-55358547-2	chr13	55358047	55359047	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025828, intron 2 of 7)	B4|SINE|B4	4236.0	NM_025828	66890.0	Mm.38868	NM_025828	ENSMUSG00000021484	Lman2	1110003H06Rik|1300009F09Rik|AA408240|AL023023|AU040819|GP36B|VIP36	lectin, mannose-binding 2	protein-coding	0.0	1.5	0.5	1.5	0.0	0.5
Merged-chr1-192759633-3	chr1	192759127	192760127	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 2 of 11)	intron (NM_144881, intron 2 of 11)	11592.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	2.0	10.5	11.5	0.0	0.0	1.5
Merged-chr4-19568922-2	chr4	19568422	19569422	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027769, intron 1 of 15)	MIRb|SINE|MIR	1186.0	NM_027769	70568.0	Mm.38390	NM_027769	ENSMUSG00000028228	Cpne3	5430428M23Rik|5730450C07Rik|C85108|CPN3	copine III	protein-coding	21.5	33.0	19.5	12.5	33.0	26.5
Merged-chr11-106660823-4	chr11	106660331	106661331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001032378, intron 13 of 13)	intron (NM_001032378, intron 13 of 13)	-47901.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	13.5	108.5	49.5	15.0	62.0	54.0
Merged-chr5-29736393-3	chr5	29735888	29736888	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028426)	promoter-TSS (NR_028426)	-452.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93780827-4	chr16	93780330	93781330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357118, intron 23 of 35)	intron (NM_001357118, intron 23 of 35)	14071.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3391555-4	chr12	3391062	3392062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008445, intron 5 of 7)	intron (NM_008445, intron 5 of 7)	26430.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105965590-4	chr8	105965079	105966079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045594, intron 1 of 23)	intron (NR_045594, intron 1 of 23)	536.0	NM_001253804	20498.0	Mm.292447	NM_009195	ENSMUSG00000017765	Slc12a4	AW546649|KCC1|RBCKCC1	solute carrier family 12, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24082222-1	chr7	24081722	24082722	+	1000.0	f0_c57.idr	5' UTR (NM_001045486, exon 1 of 5)	5' UTR (NM_001045486, exon 1 of 5)	325.0	NM_001289637	210135.0	Mm.32254	NM_172483	ENSMUSG00000057101	Zfp180	2310040I01Rik|AI852378|D130011P11|HHZ168	zinc finger protein 180	protein-coding	16.0	28.5	35.0	13.5	30.0	34.0
Merged-chr5-140830032-2	chr5	140829532	140830532	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010302, exon 1 of 4)	exon (NM_010302, exon 1 of 4)	399.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40631343-4	chr9	40630832	40631832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-54632.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	16.5	11.5	12.5	9.5	34.0	37.5
Merged-chr10-99130815-4	chr10	99130304	99131304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 4 of 12)	intron (NR_153333, intron 4 of 12)	22669.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11550756-4	chr8	11550219	11551219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024248)	promoter-TSS (NM_024248)	52.0	NM_024248	71941.0	Mm.196576	NM_024248	ENSMUSG00000056228	Cars2	2310051N18Rik|2410044A07Rik|D530030H10Rik|cysRS	cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73177336-4	chr15	73176836	73177836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	L3b|LINE|CR1	7611.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128795364-2	chr2	128794864	128795864	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 18 of 18)	intron (NM_008587, intron 18 of 18)	-22939.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	7.5	7.5	11.0	9.5	0.5	3.0
Merged-chr6-113307787-4	chr6	113307284	113308284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282128, intron 1 of 13)	intron (NM_001282128, intron 1 of 13)	647.0	NM_001282126	78783.0	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131527645-4	chr1	131527145	131528145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175382)	promoter-TSS (NM_175382)	-258.0	NM_175382	108900.0	Mm.31278	NM_175382	ENSMUSG00000055184	Fam72a	2700049P18Rik|P17	family with sequence similarity 72, member A	protein-coding	0.0	7.5	3.0	5.5	4.0	6.0
Merged-chr10-96377738-4	chr10	96377231	96378231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	151524.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54756556-4	chr14	54756013	54757013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	25373.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	189.0	412.0	378.5	128.5	410.5	280.5
Merged-chr11-54088461-4	chr11	54087950	54088950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-12474.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14323379-4	chr2	14322886	14323886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 25 of 29)	RLTR17|LTR|ERVK	62383.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-133093125-4	chr3	133092627	133093627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027927, intron 1 of 6)	intron (NM_027927, intron 1 of 6)	-1088.0	NM_001356309	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-8334664-4	chr8	8334148	8335148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	326125.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-97752436-2	chr4	97751949	97752949	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-25177.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8283791-4	chr17	8283288	8284288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018819)	promoter-TSS (NM_018819)	-25.0	NM_018819	55951.0	Mm.288510	NM_018819	ENSMUSG00000023861	Mpc1	0610006G08Rik|3830411I18Rik|Brp44l	mitochondrial pyruvate carrier 1	protein-coding	47.5	186.5	101.0	79.5	156.0	89.5
Merged-chr14-30694967-4	chr14	30694408	30695408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19941.0	NM_019460	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	21.0	36.5	32.0	41.0	60.0	51.5
Merged-chr2-180702057-4	chr2	180701555	180702555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175551)	promoter-TSS (NM_175551)	47.0	NM_011805	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	50.0	97.0	137.5	48.0	118.0	112.5
Merged-chr19-23136014-4	chr19	23135510	23136510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5216.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	53.5	124.0	105.0	45.5	71.0	44.5
Merged-chr19-3389323-4	chr19	3388837	3389837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286557)	promoter-TSS (NM_001286557)	-41.0	NM_001286557	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-69181421-4	chr17	69180922	69181922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	22066.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27860257-2	chr15	27859757	27860757	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 11 of 56)	intron (NM_001081302, intron 11 of 56)	165591.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88499517-2	chr6	88499017	88500017	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19283.0	NM_016906	53421.0	Mm.28375	NM_016906	ENSMUSG00000030082	Sec61a1	AA408394|AA410007|Sec61a	Sec61 alpha 1 subunit (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44551552-2	chr7	44551052	44552052	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009473, intron 6 of 9)	intron (NM_009473, intron 6 of 9)	2413.0	NM_009473	22260.0	Mm.968	NM_009473	ENSMUSG00000060601	Nr1h2	AI194859|LXR|LXRB|LXRBSV|LXRbeta|NER1|OR-1|RIP15|UR|Unr|Unr2	nuclear receptor subfamily 1, group H, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-9030999-4	chr12	9030505	9031505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029321, intron 1 of 2)	intron (NM_029321, intron 1 of 2)	1008.0	NM_029321	75516.0	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120492610-4	chr9	120492116	120493116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026892)	promoter-TSS (NM_026892)	10.0	NM_026892	68969.0	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29394605-1	chr17	29394105	29395105	+	1000.0	f1_balb.idr	Intergenic	Intergenic	33691.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	241.0	536.0	367.5	200.5	537.0	343.5
Merged-chr9-57073124-3	chr9	57072622	57073622	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110351, intron 1 of 21)	CpG	1082.0	NM_001110351	20466.0	Mm.15755	NM_011378	ENSMUSG00000042557	Sin3a	AW553200|Sin3|mKIAA4126|mSin3A	transcriptional regulator, SIN3A (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59486762-4	chr9	59486261	59487261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019927)	promoter-TSS (NM_019927)	-387.0	NM_019927	23806.0	Mm.305925	NM_019927	ENSMUSG00000025234	Arih1	AU021774|Ari|Ari1|Hari|Hhari|Ubch7bp|Uip77	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8988308-4	chr17	8987834	8988834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347544)	promoter-TSS (NM_001347544)	1.0	NM_001347544	66931.0	Mm.67591	NM_025851	ENSMUSG00000023873	1700010I14Rik	-	RIKEN cDNA 1700010I14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-8687374-4	chr6	8686861	8687861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252266, intron 5 of 11)	intron (NM_001252266, intron 5 of 11)	71097.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57703298-4	chr6	57702805	57703805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133737, intron 1 of 8)	CpG	850.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31413912-4	chr14	31413412	31414412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	MLT1K|LTR|ERVL-MaLR	3765.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124095973-4	chr5	124095479	124096479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019875)	promoter-TSS (NM_019875)	-181.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165642017-4	chr1	165641497	165642497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7456.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-130873963-4	chr3	130873487	130874487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143589.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4996148-4	chr7	4995652	4996652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026741)	promoter-TSS (NM_026741)	-51.0	NM_026741	68490.0	Mm.76400	NM_026741	ENSMUSG00000051550	Zfp579	1110003A17Rik|Znf579	zinc finger protein 579	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50551112-4	chr16	50550592	50551592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040379, intron 4 of 5)	intron (NR_040379, intron 4 of 5)	22590.0	NR_040379	619312.0	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84529350-4	chr2	84528841	84529841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22468.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94443423-4	chr8	94442931	94443931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8328.0	NR_015514	320377.0	Mm.486022	NR_015514		9330175E14Rik	A630085K21	RIKEN cDNA 9330175E14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107781479-4	chr3	107780956	107781956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20987.0	NM_001113529	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	7.5	22.0	5.5	8.0	13.0	5.0
Merged-chr12-119113990-4	chr12	119113510	119114510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	124266.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-72967142-4	chr17	72966643	72967643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48838.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-33275158-4	chr5	33274662	33275662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310535)	promoter-TSS (NM_001310535)	-158.0	NM_001198860	13016.0	Mm.7286	NM_013502	ENSMUSG00000037373	Ctbp1	BARS|CtBP3/BARS|D4S115h|D5H4S115|D5H4S115E	C-terminal binding protein 1	protein-coding	2.0	8.0	0.0	2.0	8.0	4.0
Merged-chr15-31532206-4	chr15	31531709	31532709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-1172.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41466853-4	chr13	41466361	41467361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	20499.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54068936-2	chr11	54068436	54069436	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019417)	promoter-TSS (NM_019417)	81.0	NM_019417	30794.0	Mm.21830	NM_019417	ENSMUSG00000020388	Pdlim4	Ril	PDZ and LIM domain 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-30954410-4	chr11	30953910	30954910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025745)	promoter-TSS (NM_025745)	12.0	NM_023906	65257.0	Mm.440539	NM_023906	ENSMUSG00000020305	Asb3	2400011J03Rik|Asb-3	ankyrin repeat and SOCS box-containing 3	protein-coding	7.5	82.0	38.0	22.0	57.5	35.5
Merged-chr7-123322611-4	chr7	123322119	123323119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 4 of 19)	intron (NM_001316713, intron 4 of 19)	47296.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58134588-3	chr15	58134101	58135101	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027435, intron 1 of 27)	CpG	481.0	NM_027435	70472.0	Mm.221758	NM_027435	ENSMUSG00000022360	Atad2	2610509G12Rik	ATPase family, AAA domain containing 2	protein-coding	136.5	318.5	259.0	114.0	266.5	231.0
Merged-chr12-110933035-4	chr12	110932528	110933528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081057, exon 10 of 21)	exon (NM_001081057, exon 10 of 21)	43764.0	NM_001081057	104859.0	Mm.35583	NM_175336	ENSMUSG00000021275	Tecpr2	4930573I19Rik|AI604920|mKIAA0297	tectonin beta-propeller repeat containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-113741380-4	chr9	113740887	113741887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286599)	promoter-TSS (NM_001286599)	-86.0	NM_001286599	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36547323-4	chr1	36546820	36547820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132321)	promoter-TSS (NR_132321)	-68.0	NR_132321	109346.0	Mm.247537	NM_026241	ENSMUSG00000079610	Ankrd39	9130416N05Rik|C030004B10Rik	ankyrin repeat domain 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87672820-2	chr6	87672320	87673320	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170489)	promoter-TSS (NM_001170489)	-652.0	NM_001170489	72103.0	Mm.31770	NM_024251	ENSMUSG00000030051	Aplf	2010301N04Rik|AI452191	aprataxin and PNKP like factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135472616-4	chr5	135472115	135473115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	72507.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135430521-4	chr1	135430012	135431012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153774)	promoter-TSS (NM_153774)	-13.0	NM_001357578	226432.0	Mm.271642	NM_153774	ENSMUSG00000041879	Ipo9	0710008K06Rik|AI845704|C78347|Imp9|Ranbp9	importin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184852459-4	chr1	184851985	184852985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6638.0	NM_133684	67247.0	Mm.177724	NM_133684	ENSMUSG00000073481	Marc2	2810484M10Rik|Mosc2|mARC1	mitochondrial amidoxime reducing component 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-26970607-4	chr14	26970111	26971111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145221)	promoter-TSS (NM_145221)	-60.0	NM_145221	72993.0	Mm.202322	NM_145221	ENSMUSG00000040760	Appl1	2900057D21Rik|7330406P05Rik|AI585782|AW209077|BB022931|C88264|DIP13	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	protein-coding	47.0	125.5	88.0	28.0	143.0	114.5
Merged-chr10-120227051-4	chr10	120226563	120227563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025431)	promoter-TSS (NM_025431)	3.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-116238847-4	chr8	116238337	116239337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-266178.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61448144-4	chr18	61447640	61448640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36467.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	44.5	180.0	95.5	40.5	172.5	97.5
Merged-chr15-66662175-4	chr15	66661682	66662682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-8588.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	6.5	15.5	8.5	10.5	20.0	9.0
Merged-chr15-86196018-2	chr15	86195518	86196518	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-9877.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-8894824-4	chr5	8894330	8895330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008830, intron 2 of 27)	intron (NM_008830, intron 2 of 27)	1109.0	NM_008830	18670.0	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-43933157-2	chr14	43932657	43933657	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	-9789.0	NM_053112	93725.0	Mm.429087	NM_053112	ENSMUSG00000090166	Ear10	Raf2	eosinophil-associated, ribonuclease A family, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129397463-5	chr6	129397018	129398018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001204239, exon 1 of 5)	5' UTR (NM_001204239, exon 1 of 5)	221.0	NM_001204239	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135282733-4	chr1	135282225	135283225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159624, intron 1 of 9)	intron (NM_001159624, intron 1 of 9)	1359.0	NM_145417	215615.0	Mm.291048	NM_145417	ENSMUSG00000041926	Rnpep	-	arginyl aminopeptidase (aminopeptidase B)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-84583602-4	chr16	84583093	84584093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96196.0	NR_040537	78023.0	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	47.5	85.5	97.5	11.5	14.0	14.5
Merged-chr11-106428255-4	chr11	106427745	106428745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 5 of 21)	intron (NM_023913, intron 5 of 21)	-45464.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166793761-4	chr2	166793266	166794266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023815)	promoter-TSS (NM_023815)	-1.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-55909753-4	chr7	55909283	55910283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 22 of 30)	MLT1C|LTR|ERVL-MaLR	52710.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	110.5	242.0	154.5	104.5	253.5	128.5
Merged-chr4-88693634-4	chr4	88693137	88694137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2369.0	NM_008336	15974.0	Mm.377093	NM_008336	ENSMUSG00000100079	Ifnab	-	interferon alpha B	protein-coding	5.5	9.0	11.5	5.5	12.0	10.5
Merged-chr11-113450259-3	chr11	113449754	113450754	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027216, intron 5 of 9)	MTD|LTR|ERVL-MaLR	115561.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	0.0	0.0	0.0	0.5	6.5	4.5
Merged-chr7-6282977-4	chr7	6282463	6283463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3617.0	NM_001024928	384763.0	Mm.276279	NM_001024928	ENSMUSG00000054893	Zfp667	A830025F02Rik|Mip1|ZNF667	zinc finger protein 667	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31020271-2	chr17	31019771	31020771	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37423.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99253058-2	chr15	99252558	99253558	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045627, intron 1 of 2)	MTD|LTR|ERVL-MaLR	-1097.0	NM_016766	51812.0	Mm.383472	NM_016766	ENSMUSG00000037570	Mcrs1	C78274|ICP22BP|MSP58|P78	microspherule protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-116989502-4	chr2	116989007	116990007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89355.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21717612-4	chr13	21717142	21718142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178206)	promoter-TSS (NM_178206)	14.0	NM_178206	319152.0	Mm.377874	NM_178206	ENSMUSG00000101355	Hist1h3h	H3-291	histone cluster 1, H3h	protein-coding	13.0	22.0	14.5	13.0	43.0	5.0
Merged-chr8-11103505-2	chr8	11103005	11104005	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95075.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-84143311-4	chr7	84142798	84143798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133722, intron 1 of 2)	intron (NM_133722, intron 1 of 2)	8595.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86779415-4	chr6	86778926	86779926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013471, intron 1 of 12)	L1M1|LINE|L1	-4312.0	NM_001331120	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44582296-2	chr13	44581796	44582796	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	142569.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	2.0	0.0	5.5	2.0	4.5	3.0
Merged-chr11-70254607-2	chr11	70254107	70255107	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007440, exon 2 of 14)	exon (NM_007440, exon 2 of 14)	763.0	NM_001331118	11684.0	Mm.12286	NM_007440	ENSMUSG00000000320	Alox12	9930022G08Rik|Alox12p|P-12LO	arachidonate 12-lipoxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9490673-4	chr18	9490185	9491185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40531.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121719916-3	chr9	121719409	121720409	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010918, intron 2 of 16)	CpG-15515	728.0	NM_010918	18087.0	Mm.32842	NM_010918	ENSMUSG00000032525	Nktr	5330401F18Rik|D9Wsu172e	natural killer tumor recognition sequence	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127566672-2	chr10	127566172	127567172	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008512, exon 41 of 89)	exon (NM_008512, exon 41 of 89)	-32113.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.0	2.5	11.5	5.5	1.5	4.0
Merged-chr16-55975104-4	chr16	55974605	55975605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027965)	promoter-TSS (NR_027965)	-488.0	NR_027965	66391.0	Mm.472722	NM_133677	ENSMUSG00000102101	Zbtb11os1	2310061J03Rik	zinc finger and BTB domain containing 11, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-103425123-4	chr9	103424632	103425632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001002896, exon 7 of 7)	3' UTR (NM_001002896, exon 7 of 7)	1554.0	NR_040466	100529079.0	Mm.437003	NR_040466	ENSMUSG00000086236	5830418P13Rik	-	RIKEN cDNA 5830418P13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81139887-2	chr10	81139387	81140387	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010731, intron 1 of 2)	intron (NM_010731, intron 1 of 2)	3616.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108997485-4	chr3	108996978	108997978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163567, intron 2 of 10)	intron (NM_001163567, intron 2 of 10)	30129.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	8.5	21.5	28.5	9.0	31.5	9.0
Merged-chr12-51971392-4	chr12	51970907	51971907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177171)	promoter-TSS (NM_177171)	-86.0	NM_177171	320487.0	Mm.131941	NM_177171	ENSMUSG00000035181	Heatr5a	C230081H03Rik|D930036F22Rik|mKIAA1316	HEAT repeat containing 5A	protein-coding	12.0	18.0	32.0	4.0	11.5	32.0
Merged-chr11-54787713-4	chr11	54787196	54788196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178626)	promoter-TSS (NM_178626)	7.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-16312856-4	chr9	16312351	16313351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 1 of 24)	intron (NM_001080814, intron 1 of 24)	65380.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-65144255-2	chr6	65143755	65144755	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019455, intron 1 of 5)	(CA)n|Simple_repeat|Simple_repeat	475.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23550485-4	chr17	23550019	23551019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126485)	promoter-TSS (NR_126485)	-280.0	NR_126485	320020.0	Mm.445111	NR_126484		6330415G19Rik	-	RIKEN cDNA 6330415G19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29381645-4	chr17	29381146	29382146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20732.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	53.0	167.5	93.5	68.0	138.5	127.5
Merged-chr14-60757898-4	chr14	60757419	60758419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033272, intron 11 of 12)	intron (NM_001033272, intron 11 of 12)	-10215.0	NM_183175	239126.0	Mm.319636	NM_183175	ENSMUSG00000071347	C1qtnf9	9130217G22Rik|CTRP9|Ciqtnf9	C1q and tumor necrosis factor related protein 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141266542-4	chr7	141266111	141267111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252600)	promoter-TSS (NM_001252600)	-187.0	NM_001252600	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24903335-2	chr7	24902835	24903835	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130151, intron 1 of 29)	PB1D10|SINE|Alu	349.0	NM_001130151	16801.0	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-5101476-4	chr7	5101010	5102010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15401.0	NM_001145013	192658.0	Mm.28764	NM_138954	ENSMUSG00000035191	Rfpl4	D7Ertd486e|Rfpl4a	ret finger protein-like 4	protein-coding	31.5	61.5	42.0	32.5	57.5	41.0
Merged-chr7-45704349-2	chr7	45703849	45704849	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016974)	promoter-TSS (NM_016974)	-898.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3537897-4	chr19	3537398	3538398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164159, intron 1 of 21)	intron (NM_001164159, intron 1 of 21)	37851.0	NM_001360430	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	4.0	1.0	12.5	13.5	17.5	4.5
Merged-chr4-154142364-4	chr4	154141857	154142857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021499)	promoter-TSS (NM_021499)	-15.0	NM_021499	59002.0	Mm.46508	NM_021499	ENSMUSG00000029029	Wrap73	2610044M17Rik|5330425N03Rik|Dd57|Wdr8	WD repeat containing, antisense to Trp73	protein-coding	0.0	0.0	12.0	2.0	2.5	1.5
Merged-chr13-30702387-4	chr13	30701877	30702877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134068, intron 4 of 7)	intron (NM_134068, intron 4 of 7)	42318.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-12780488-7	chr7	12779956	12780956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4798.0	NM_001017955	232875.0	Mm.333573	NM_001017955	ENSMUSG00000070822	Zscan18	EG232875	zinc finger and SCAN domain containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120179185-4	chr8	120178668	120179668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1699.0	NM_001033980	436062.0	Mm.334852	NM_001033980	ENSMUSG00000042269	Fam92b	1700120B06Rik	family with sequence similarity 92, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117146299-4	chr11	117145797	117146797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 7 of 16)	intron (NM_001166507, intron 7 of 16)	31125.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91585457-4	chr12	91584954	91585954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175335, intron 2 of 8)	intron (NM_175335, intron 2 of 8)	4195.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97405200-2	chr11	97404700	97405700	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42649.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25288049-4	chr15	25287540	25288540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125724.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31062391-4	chr2	31061868	31062868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	34132.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21272185-4	chr19	21271668	21272668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009551)	promoter-TSS (NM_009551)	-110.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	38.0	90.0	84.5	36.5	77.5	73.0
Merged-chr17-87379096-4	chr17	87378592	87379592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 19 of 19)	intron (NM_028639, intron 19 of 19)	48649.0	NM_029298	75467.0	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111438083-1	chr12	111437583	111438583	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-4578.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89089292-2	chr3	89088792	89089792	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001083808, exon 4 of 9)	exon (NM_001083808, exon 4 of 9)	739.0	NM_001083808	72296.0	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-66123637-4	chr17	66123172	66124172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001348292, exon 1 of 27)	5' UTR (NM_001348292, exon 1 of 27)	152.0	NM_001348292	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117088640-4	chr11	117088132	117089132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	11284.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191073239-4	chr1	191072732	191073732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198654, intron 4 of 5)	intron (NM_198654, intron 4 of 5)	10211.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	17.5	61.0	22.0	2.5	55.5	10.0
Merged-chr4-124710002-4	chr4	124709508	124710508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4853.0	NM_029157	75062.0	Mm.25779	NM_029157	ENSMUSG00000028902	Sf3a3	4930512K19Rik|60kDa	splicing factor 3a, subunit 3	protein-coding	19.5	61.0	48.0	18.5	101.5	36.0
Merged-chr11-104469465-4	chr11	104468981	104469981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359634)	promoter-TSS (NM_001359634)	-620.0	NM_001359634	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58999811-4	chr13	58999320	59000320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	192123.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	8.5	36.5	18.0	18.0	35.5	18.0
Merged-chr3-65392654-4	chr3	65392151	65393151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026155)	promoter-TSS (NM_026155)	-98.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124032312-4	chr5	124031783	124032783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177876)	promoter-TSS (NM_177876)	-23.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	37.0	178.0	95.0	65.0	146.0	119.5
Merged-chr18-54853235-4	chr18	54852732	54853732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136948.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-54246633-4	chr3	54246138	54247138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253682, intron 3 of 11)	intron (NM_001253682, intron 3 of 11)	90581.0	NM_001253682	22066.0	Mm.10100	NM_016984	ENSMUSG00000027748	Trpc4	CCE1|STRPC4|Trp4|Trrp4	transient receptor potential cation channel, subfamily C, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-87753737-4	chr10	87753251	87754251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104514.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	28.5	32.0	29.5	4.0	20.0	17.5
Merged-chr12-85220001-2	chr12	85219501	85220501	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145445, intron 2 of 7)	intron (NM_145445, intron 2 of 7)	520.0	NM_145445	217715.0	Mm.29041	NM_145445	ENSMUSG00000004788	Eif2b2	EIF-2Bbeta|EIF2B	eukaryotic translation initiation factor 2B, subunit 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11119487-4	chr19	11118993	11119993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027058, intron 1 of 6)	intron (NM_027058, intron 1 of 6)	11385.0	NM_027058	69369.0	Mm.391200	NM_027058	ENSMUSG00000024729	1700017D01Rik	-	RIKEN cDNA 1700017D01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-82822112-4	chr6	82821582	82822582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47628.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-63097450-4	chr11	63096936	63097936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31546.0	NM_001302258	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97355347-4	chr7	97354857	97355857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16260.0	NM_199035	381903.0	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	49.0	90.5	83.5	47.0	111.5	68.5
Merged-chr2-167374634-2	chr2	167374134	167375134	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-25456.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7556464-4	chr9	7555965	7556965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1964.0	NM_008611	17394.0	Mm.16415	NM_008611	ENSMUSG00000005800	Mmp8	BB138268	matrix metallopeptidase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84856978-4	chr8	84856481	84857481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025648)	promoter-TSS (NM_025648)	-5.0	NR_152751	66590.0	Mm.292517	NM_025648	ENSMUSG00000003808	Farsa	0610012A19Rik|Farsla|pheRS	phenylalanyl-tRNA synthetase, alpha subunit	protein-coding	0.0	38.5	19.5	5.0	20.5	23.0
Merged-chr2-34944914-4	chr2	34944437	34945437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009421, intron 10 of 10)	intron (NM_009421, intron 10 of 10)	16835.0	NM_009421	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19325986-4	chr7	19325475	19326475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15930.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75834527-4	chr10	75834018	75835018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010361, exon 1 of 5)	5' UTR (NM_010361, exon 1 of 5)	363.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-69185568-4	chr10	69185051	69186051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23001.0	NM_001252636	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-75236940-4	chr1	75236440	75237440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159885, exon 1 of 9)	exon (NM_001159885, exon 1 of 9)	238.0	NM_001159885	56812.0	Mm.489660	NM_020266	ENSMUSG00000026203	Dnajb2	2700059H22Rik|Dnajb10|Hsj1|mDj8	DnaJ heat shock protein family (Hsp40) member B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102976405-4	chr2	102975901	102976901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-74736.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155930137-4	chr2	155929652	155930652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_018888, exon 1 of 10)	5' UTR (NM_018888, exon 1 of 10)	158.0	NM_001355443	56046.0	Mm.158827	NM_018888	ENSMUSG00000005882	Uqcc1	2310079L17Rik|2410003P15Rik|3110038N19Rik|Bfzb|Bfzp|Cbp3|Uqcc	ubiquinol-cytochrome c reductase complex assembly factor 1	protein-coding	52.0	126.5	91.0	26.5	86.5	56.0
Merged-chr7-82802486-4	chr7	82801991	82802991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46847.0	NR_046004	77800.0	Mm.444811	NR_046004	ENSMUSG00000086690	4933406J10Rik	A930009F24Rik	RIKEN cDNA 4933406J10 gene	ncRNA	20.0	50.0	33.5	16.5	29.5	53.5
Merged-chr8-83608112-4	chr8	83607619	83608619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018808)	promoter-TSS (NM_018808)	-56.0	NM_018808	81489.0	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	14.5	29.5	34.0	15.0	29.5	33.5
Merged-chr8-70234487-4	chr8	70233900	70234900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133972)	promoter-TSS (NM_133972)	22.0	NM_133972	76813.0	Mm.383251	NM_133972	ENSMUSG00000002343	Armc6	2410153K17Rik|AW554412	armadillo repeat containing 6	protein-coding	20.0	73.0	52.0	17.0	94.0	55.5
Merged-chr10-17724304-6	chr10	17723819	17724819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010828, exon 2 of 2)	exon (NM_010828, exon 2 of 2)	1091.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35146930-1	chr17	35146430	35147430	+	1000.0	f1_c57bl6.idr	intron (NM_057171, intron 24 of 24)	intron (NM_057171, intron 24 of 24)	11216.0	NM_001252469	224727.0	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57912141-4	chr15	57911636	57912636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167679)	promoter-TSS (NM_001167679)	-63.0	NM_001081396	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32177033-4	chr16	32176529	32177529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2771.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55488478-4	chr1	55487989	55488989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	82543.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	4.5	7.0	7.0	6.0	0.0	3.0
Merged-chr2-156992137-4	chr2	156991635	156992635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013865)	promoter-TSS (NM_013865)	-24.0	NM_180956	29812.0	Mm.279256	NM_013865	ENSMUSG00000027634	Ndrg3	4833415O14Rik|AI747193|Ndr3	N-myc downstream regulated gene 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98358365-4	chr11	98357879	98358879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021547)	promoter-TSS (NM_021547)	11.0	NM_021547	59045.0	Mm.265546	NM_021547	ENSMUSG00000018167	Stard3	Mln64|es64	START domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35199578-2	chr17	35199078	35200078	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001278601, exon 3 of 3)	3' UTR (NM_001278601, exon 3 of 3)	2429.0	NM_013693	21926.0	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	3.5	10.5	3.0	18.5	17.5	11.5
Merged-chr3-38112765-4	chr3	38112262	38113262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95357.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75067507-4	chr8	75067048	75068048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011622, exon 13 of 15)	exon (NM_011622, exon 13 of 15)	-26070.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34297234-1	chr17	34296734	34297734	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-8633.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	111.5	310.0	147.5	114.0	286.0	107.0
Merged-chr1-84924287-4	chr1	84923795	84924795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027921, intron 2 of 4)	intron (NM_027921, intron 2 of 4)	10788.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-67859696-4	chr14	67859175	67860175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105857)	promoter-TSS (NR_105857)	70.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	19.5	24.0	29.0	50.5	98.0	54.5
Merged-chr3-68557139-4	chr3	68556653	68557653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113421, intron 2 of 7)	intron (NM_001113421, intron 2 of 7)	-15215.0	NM_013928	30953.0	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32714057-4	chr5	32713609	32714609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	32233.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	192.5	548.5	351.5	158.5	500.5	333.0
Merged-chr2-73526885-4	chr2	73526378	73527378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	2609.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90071649-4	chr7	90071151	90072151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42492.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	9.0	9.0	23.0	8.5	15.0	27.5
Merged-chr18-80469276-2	chr18	80468765	80469765	+	1000.0	f0_balb.idr|f0_c57.idr	exon (NM_026295, exon 1 of 13)	exon (NM_026295, exon 1 of 13)	402.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	23.0	81.5	32.0	23.0	81.5	37.0
Merged-chr15-75709404-4	chr15	75708886	75709886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163465, intron 4 of 14)	MIR3|SINE|MIR	5098.0	NM_008164	14787.0	Mm.57052	NM_008164	ENSMUSG00000022580	Rhpn1	BB023497|Grbp|Rhophilin|mKIAA1929	rhophilin, Rho GTPase binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45574314-4	chr17	45573809	45574809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1048.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-68749391-4	chr7	68748911	68749911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025549)	promoter-TSS (NM_025549)	-173.0	NM_025549	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-13152376-3	chr4	13151879	13152879	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	245542.0	NM_001171801	208820.0	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	2.0	0.0	2.0	1.0	0.0	3.0
Merged-chr11-119392965-4	chr11	119392477	119393477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2505.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	5.5	34.0	30.0	21.0	24.5	39.5
Merged-chr7-101396317-2	chr7	101395817	101396817	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 16 of 33)	intron (NM_001040111, intron 16 of 33)	1929.0	NM_198096	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21718973-4	chr9	21718467	21719467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-4609.0	NM_001252658	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64876441-4	chr1	64875931	64876931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 5 of 7)	intron (NM_001039493, intron 5 of 7)	80393.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125345767-4	chr6	125345263	125346263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011324)	TTS (NM_011324)	-3960.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	2.0	11.0	9.5	7.0	8.0	3.5
Merged-chr9-44066984-4	chr9	44066473	44067473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198092)	promoter-TSS (NM_198092)	-48.0	NM_198092	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128746714-4	chr2	128746213	128747213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 4 of 18)	intron (NM_008587, intron 4 of 18)	47798.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	47.0	98.5	58.5	18.0	43.5	25.5
Merged-chr2-20899504-4	chr2	20898989	20899989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128084, intron 3 of 24)	intron (NM_001128084, intron 3 of 24)	68232.0	NM_001081364	71435.0	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-103692279-4	chr5	103691804	103692804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-36572.0	NM_001163550	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13946706-4	chr10	13946206	13947206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19369.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3146220-1	chr11	3145720	3146720	+	1000.0	f1_balb.idr	exon (NM_030207, exon 15 of 33)	exon (NM_030207, exon 15 of 33)	22199.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-89271437-2	chr4	89270937	89271937	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10755.0	NM_001040654	12578.0	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin dependent kinase inhibitor 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45514223-4	chr4	45513815	45514815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	16513.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	37.5	52.0	44.0	27.0	39.5	53.5
Merged-chr7-6172251-4	chr7	6171778	6172778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146024)	promoter-TSS (NM_001146024)	-235.0	NM_028316	72667.0	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138326297-4	chr4	138325808	138326808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026880)	promoter-TSS (NM_026880)	-12.0	NM_026880	68943.0	Mm.18539	NM_026880	ENSMUSG00000028756	Pink1	1190006F07Rik|AU042772|AW557854|BRPK|mFLJ00387	PTEN induced putative kinase 1	protein-coding	8.5	19.0	18.0	12.5	26.5	14.5
Merged-chr11-59525442-4	chr11	59524940	59525940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16129.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152395944-4	chr3	152395471	152396471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287139)	promoter-TSS (NM_001287139)	-32.0	NM_001080755	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	54.5	108.0	115.0	51.5	158.0	99.0
Merged-chr5-76183885-4	chr5	76183392	76184392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011626)	promoter-TSS (NM_011626)	12.0	NM_011626	21982.0	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35394296-4	chr8	35393787	35394787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18546.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	43.0	124.5	95.0	65.0	147.5	122.0
Merged-chr4-63562394-4	chr4	63561894	63562894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144905, intron 2 of 9)	intron (NM_144905, intron 2 of 9)	2167.0	NM_144905	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-63937788-4	chr7	63937288	63938288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	CpG	1127.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	106.0	329.0	221.5	75.0	264.0	176.0
Merged-chr5-121848943-4	chr5	121848448	121849448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359949)	promoter-TSS (NM_001359949)	-49.0	NM_175474	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	31.0	69.5	26.5	19.5	55.5	28.0
Merged-chr12-55491939-4	chr12	55491461	55492461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010907, intron 1 of 5)	intron (NM_010907, intron 1 of 5)	686.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-172440024-2	chr2	172439524	172440524	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025542)	promoter-TSS (NM_025542)	-554.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114795514-2	chr11	114795014	114796014	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028055, intron 1 of 2)	intron (NM_028055, intron 1 of 2)	378.0	NM_028055	72014.0	Mm.38347	NM_028055	ENSMUSG00000000202	Btbd17	1500005I02Rik|Tango10a	BTB (POZ) domain containing 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-98024574-4	chr3	98024082	98025082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	11044.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36632350-4	chr16	36631857	36632857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	L1MB3|LINE|L1	33720.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17947772-2	chr10	17947272	17948272	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033432, exon 1 of 4)	exon (NM_001033432, exon 1 of 4)	295.0	NM_001033432	380629.0	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144044642-4	chr3	144044155	144045155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	157677.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24434812-2	chr16	24434312	24435312	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 1 of 12)	intron (NM_178665, intron 1 of 12)	-13279.0	NM_001145952	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54823090-4	chr12	54822585	54823585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27423.0	NM_026998	72183.0	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89449478-2	chr6	89448978	89449978	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 4 of 6)	MTB_Mm|LTR|ERVL-MaLR	-86865.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3706789-4	chr4	3706294	3707294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	-8170.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	18.0	38.0	21.0	20.0	27.0	16.5
Merged-chr4-134595248-4	chr4	134594760	134595760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 2 of 11)	ORR1D2|LTR|ERVL-MaLR	-27409.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	3.5	31.0	21.5	11.0	20.5	18.0
Merged-chr3-88102910-4	chr3	88102399	88103399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033484, intron 19 of 37)	intron (NM_001033484, intron 19 of 37)	20848.0	NM_001033484	404710.0	Mm.331133	NM_001033484	ENSMUSG00000028068	Iqgap3	AI593484|D030034H08	IQ motif containing GTPase activating protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-45926879-4	chr11	45926361	45927361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18074.0	NM_028185	72290.0	Mm.249827	NM_028185	ENSMUSG00000044847	Lsm11	2210404M20Rik|AV079530	U7 snRNP-specific Sm-like protein LSM11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91353575-2	chr16	91353075	91354075	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-19208.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53440246-4	chr4	53439749	53440749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159633)	promoter-TSS (NM_001159633)	-164.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	3.0	26.5	18.5	0.5	18.0	19.5
Merged-chr8-105636374-4	chr8	105635870	105636870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181322)	promoter-TSS (NM_181322)	-168.0	NM_181322	13018.0	Mm.269474	NM_181322	ENSMUSG00000005698	Ctcf	AW108038	CCCTC-binding factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116183189-4	chr9	116182695	116183695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5985.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	56.0	136.5	108.5	100.5	265.0	162.0
Merged-chr1-34715388-4	chr1	34714863	34715863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79153.0	NR_033627	241051.0	Mm.282827	NR_033627		AA619741	-	PHD finger protein 19 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146776830-4	chr6	146776309	146777309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001346666, exon 12 of 12)	3' UTR (NM_001346666, exon 12 of 12)	-28721.0	NM_001289680	272322.0	Mm.333500	NM_172309	ENSMUSG00000040187	Arntl2	4632430A05Rik|BMAL2|CLIF|MOP9|bHLHe6	aryl hydrocarbon receptor nuclear translocator-like 2	protein-coding	4.5	2.0	4.0	0.0	4.5	4.5
Merged-chr13-75840266-2	chr13	75839778	75840778	+	1000.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_053108, intron 1 of 2)	intron (NM_053108, intron 1 of 2)	392.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	11.5	45.5	16.5	17.0	37.5	22.0
Merged-chr8-46617303-4	chr8	46616789	46617789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009810)	promoter-TSS (NM_009810)	-2.0	NM_001284409	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30921678-6	chr5	30921143	30922143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001349066)	promoter-TSS (NM_001349066)	84.0	NM_001310524	16548.0	Mm.22451	NM_008439	ENSMUSG00000029162	Khk	-	ketohexokinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-109234381-2	chr13	109233881	109234881	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-90363.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45342601-3	chr4	45342109	45343109	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153167, exon 1 of 7)	exon (NM_153167, exon 1 of 7)	508.0	NM_153167	242418.0	Mm.317668	NM_153167	ENSMUSG00000035572	Dcaf10	AA959934|Wdr32	DDB1 and CUL4 associated factor 10	protein-coding	23.0	31.5	43.5	9.5	50.5	44.5
Merged-chr15-76722777-4	chr15	76722272	76723272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198119)	promoter-TSS (NM_198119)	-599.0	NM_198119	378937.0	Mm.289666	NM_198119	ENSMUSG00000033707	Lrrc24	6430402H13Rik	leucine rich repeat containing 24	protein-coding	27.0	27.5	18.5	14.0	28.5	31.0
Merged-chr2-132598705-2	chr2	132598205	132599205	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033469, intron 1 of 3)	(TTCCC)n|Simple_repeat|Simple_repeat	509.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97517988-4	chr15	97517480	97518480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	187842.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-82996938-4	chr6	82996472	82997472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 4 of 9)	intron (NM_033079, intron 4 of 9)	36499.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	5.0	22.0	18.5	7.5	43.5	37.0
Merged-chr10-93477036-4	chr10	93476536	93477536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008517, intron 14 of 18)	intron (NM_008517, intron 14 of 18)	-11732.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	27.0	36.0	35.0	22.5	69.5	45.0
Merged-chr10-62602206-5	chr10	62601687	62602687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019553, exon 1 of 15)	exon (NM_019553, exon 1 of 15)	111.0	NM_019553	56200.0	Mm.413275	NM_019553	ENSMUSG00000020075	Ddx21	AI255159|AL022742|D10Ertd645e|D10Wsu42e	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118792477-1	chr9	118791977	118792977	+	1000.0	f1_c57bl6.idr	intron (NM_001113514, intron 3 of 13)	intron (NM_001113514, intron 3 of 13)	80785.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.5	2.0	0.0	0.0
Merged-chr4-148444744-4	chr4	148444314	148445314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027873)	promoter-TSS (NM_027873)	-63.0	NM_027873	71707.0	Mm.292503	NM_027873	ENSMUSG00000047719	Ubiad1	1200002M06Rik|AI426463|AW320947|Tere1	UbiA prenyltransferase domain containing 1	protein-coding	47.0	79.5	92.0	37.0	67.0	72.5
Merged-chr6-120112636-4	chr6	120112132	120113132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	19252.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88274891-4	chr8	88274390	88275390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007406, intron 1 of 27)	intron (NM_007406, intron 1 of 27)	2487.0	NM_007406	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	1.0	27.0	12.5	1.5	22.0	13.0
Merged-chr10-127642510-3	chr10	127642014	127643014	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009284)	promoter-TSS (NM_009284)	-472.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	118.5	269.0	176.5	91.0	231.0	192.5
Merged-chr16-13819256-4	chr16	13818773	13819773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010946)	promoter-TSS (NM_010946)	22.0	NM_001346111	18203.0	Mm.380410	NM_010946	ENSMUSG00000022681	Ntan1	PNAA|PNAD	N-terminal Asn amidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88298164-4	chr8	88297671	88298671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037724, intron 3 of 27)	intron (NM_001037724, intron 3 of 27)	3967.0	NM_001037724	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	21.5	76.0	42.0	6.0	56.5	42.5
Merged-chr9-7837922-1	chr9	7837422	7838422	+	1000.0	f0_c57.idr	promoter-TSS (NM_007465)	promoter-TSS (NM_007465)	-865.0	NM_007465	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36499592-2	chr15	36499092	36500092	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2801.0	NM_175134	68839.0	Mm.396537	NM_175134	ENSMUSG00000048307	Ankrd46	1110054N06Rik|AI314978|AI987733	ankyrin repeat domain 46	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71453267-4	chr2	71452767	71453767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025633)	promoter-TSS (NM_025633)	-71.0	NM_025633	66559.0	Mm.152796	NM_025633	ENSMUSG00000041921	Metap1d	2310066F24Rik|3110033D18Rik|AV117938|MAP 1D|Map1d|MetAP 1D|Metapl1	methionyl aminopeptidase type 1D (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101664166-4	chr13	101663655	101664655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28475.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69778149-4	chr11	69777661	69778661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029348, exon 4 of 4)	exon (NM_029348, exon 4 of 4)	12249.0	NM_029348	75580.0	Mm.426361	NM_029348	ENSMUSG00000018750	Zbtb4	2310026P19Rik|9230111I22Rik|mKIAA1538	zinc finger and BTB domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20803708-4	chr14	20803150	20804150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9411.0	NR_153779	102631887.0	Mm.122292	NR_153779	ENSMUSG00000114241	Gm30108	-	predicted gene, 30108	ncRNA	2.0	6.0	2.5	2.0	10.5	8.0
Merged-chr7-141409074-4	chr7	141408553	141409553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172116, intron 7 of 7)	intron (NM_172116, intron 7 of 7)	5072.0	NM_172116	213350.0	Mm.290953	NM_172116	ENSMUSG00000051007	Gatd1	BC023835|D230016J19Rik|Pddc1	glutamine amidotransferase like class 1 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-35575073-4	chr5	35574553	35575553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030208)	promoter-TSS (NM_030208)	17.0	NM_030208	78890.0	Mm.98522	NM_030208	ENSMUSG00000029097	Trmt44	2310079F23Rik|Mettl19	tRNA methyltransferase 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142926539-4	chr5	142926040	142927040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19786.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41572864-2	chr13	41572364	41573364	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G1|LTR|ERVL-MaLR	-33352.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-13954475-4	chr13	13953971	13954971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362404)	promoter-TSS (NM_001362404)	-203.0	NM_001362404	97884.0	Mm.21686	NM_178640	ENSMUSG00000039242	B3galnt2	A930105D20Rik|C80633|D230016N13Rik	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32595801-4	chr19	32595290	32596290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001201470)	promoter-TSS (NM_001201470)	75.0	NM_001201470	23972.0	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100738383-2	chr15	100737883	100738883	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5646.0	NR_045782	619313.0	Mm.123436	NR_045781	ENSMUSG00000116504	I730030J21Rik	-	RIKEN cDNA I730030J21 gene	ncRNA	6.5	11.0	6.5	0.5	3.5	0.5
Merged-chr1-60973768-3	chr1	60973255	60974255	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4159.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	6.5	29.5	20.0	10.5	24.0	14.0
Merged-chr16-73756904-4	chr16	73756397	73757397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	585170.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-140765836-2	chr6	140765336	140766336	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR31D_MM|LTR|ERVK	138951.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-35906099-4	chr13	35905667	35906667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145938, intron 1 of 7)	CpG	180.0	NM_145938	208366.0	Mm.35545	NM_145938	ENSMUSG00000021418	Rpp40	D8Bwg1265e|Rnasep1	ribonuclease P 40 subunit	protein-coding	25.0	30.5	36.5	31.0	31.5	48.5
Merged-chr1-95451108-4	chr1	95450629	95451629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137501.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6398642-2	chr19	6398142	6399142	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011224)	TTS (NM_011224)	-1941.0	NM_011242	19395.0	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136415351-4	chr1	136414922	136415922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024328)	promoter-TSS (NR_024328)	97.0	NR_024328	320054.0	Mm.208000	NR_024328	ENSMUSG00000097403	9230116N13Rik	-	RIKEN cDNA 9230116N13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-28421723-4	chr6	28421230	28422230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028900)	promoter-TSS (NM_028900)	-6.0	NM_028900	74375.0	Mm.332950	NM_028900	ENSMUSG00000029708	Gcc1	4932417P04Rik	golgi coiled coil 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-58161128-4	chr2	58160646	58161646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1024.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25407375-4	chr15	25406858	25407858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	6406.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27617126-4	chr3	27616638	27617638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 4 of 26)	MER126|DNA|DNA	-32143.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-83724412-4	chr2	83723917	83724917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008402)	promoter-TSS (NM_008402)	20.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	5.5	35.0	40.0	21.5	49.5	41.0
Merged-chr3-88142658-1	chr3	88142158	88143158	+	1000.0	f0_c57.idr	5' UTR (NM_133665, exon 1 of 11)	5' UTR (NM_133665, exon 1 of 11)	286.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67845420-4	chr5	67844935	67845935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	1996.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102821975-1	chr2	102821475	102822475	+	1000.0	f1_balb.idr	intron (NM_001039150, intron 13 of 13)	intron (NM_001039150, intron 13 of 13)	-75215.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	10.5	22.5	13.0	2.0	10.0	22.5
Merged-chr18-65697791-4	chr18	65697294	65698294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177028)	promoter-TSS (NM_177028)	-474.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	74.0	152.5	118.5	101.5	173.5	167.5
Merged-chr2-38356547-2	chr2	38356047	38357047	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290646, intron 3 of 4)	intron (NM_001290646, intron 3 of 4)	5239.0	NM_010710	16870.0	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104408079-4	chr9	104407556	104408556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18057.0	NR_035516	100316725.0		NR_035516	ENSMUSG00000089406	Mir2136	mmu-mir-2136	microRNA 2136	ncRNA	18.5	126.0	62.5	113.0	180.5	112.0
Merged-chr7-64360235-4	chr7	64359751	64360751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177893, intron 8 of 13)	intron (NM_177893, intron 8 of 13)	13844.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80033543-4	chr7	80033037	80034037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	ID4|SINE|ID	7309.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	89.5	154.0	124.5	97.5	159.0	131.5
Merged-chr4-120978468-4	chr4	120977975	120978975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133716, intron 4 of 9)	intron (NM_133716, intron 4 of 9)	-5153.0	NR_105982	102465614.0		NR_105982	ENSMUSG00000106436	Mir7015	mmu-mir-7015	microRNA 7015	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21220673-4	chr9	21220163	21221163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18669.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136828350-4	chr6	136827868	136828868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178776)	promoter-TSS (NM_178776)	-152.0	NM_021714	60321.0	Mm.141197	NM_021714	ENSMUSG00000030216	Wbp11	2510026P17Rik|D6Wsu113e|Npwbp|SIPP1	WW domain binding protein 11	protein-coding	119.0	336.0	203.5	163.0	334.5	237.0
Merged-chr19-6941536-4	chr19	6941102	6942102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007522)	promoter-TSS (NM_007522)	-95.0	NM_001177362	107173.0	Mm.276555	NM_207220	ENSMUSG00000024958	Gpr137	AI428855	G protein-coupled receptor 137	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36712718-2	chr16	36712218	36713218	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 3 of 7)	MIR|SINE|MIR	18740.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29172844-4	chr11	29172352	29173352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134034)	promoter-TSS (NM_134034)	-55.0	NM_134034	104570.0	Mm.276386	NM_134034	ENSMUSG00000020463	Ppp4r3b	AW011752|AW557776|Smek2|mKIAA1387	protein phosphatase 4 regulatory subunit 3B	protein-coding	23.5	60.0	38.5	29.0	37.5	35.0
Merged-chr11-95844903-4	chr11	95844402	95845402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023121, intron 2 of 3)	intron (NM_023121, intron 2 of 3)	1657.0	NM_001284397	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144247513-4	chr2	144247017	144248017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18685.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80691823-8	chr18	80691338	80692338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 2 of 9)	intron (NM_198429, intron 2 of 9)	16335.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	5.0	29.0	26.5	7.0	25.0	35.0
Merged-chr5-88564899-4	chr5	88564411	88565411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289775)	promoter-TSS (NM_001289775)	-129.0	NM_001289774	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62266287-4	chr4	62265788	62266788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS_Mus|LTR|ERV1	-20141.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	4.5	3.0	1.5	0.0	1.0	3.0
Merged-chr8-13138268-2	chr8	13137768	13138768	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146207, intron 15 of 19)	ORR1F|LTR|ERVL-MaLR	2196.0	NR_106032	102465645.0		NR_106032	ENSMUSG00000098532	Mir7065	Gm27871|mmu-mir-7065	microRNA 7065	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35654438-4	chr8	35653954	35654954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-65434.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	8.0	51.5	43.0	38.5	19.5	42.0
Merged-chr2-52500069-4	chr2	52499572	52500572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	58539.0	NM_146123	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117488963-1	chr5	117488463	117489463	+	1000.0	f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	RSINE1|SINE|B4	74961.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	3.5	2.0	2.5	0.5	1.0	0.5
Merged-chr6-124741155-4	chr6	124740653	124741653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013535)	promoter-TSS (NM_013535)	-74.0	NM_013535	14790.0	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75081862-7	chr8	75081353	75082353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-11765.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	18.5	18.0	30.0	28.5	18.5	20.0
Merged-chr8-116978953-4	chr8	116978405	116979405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357254)	promoter-TSS (NM_001357254)	54.0	NM_027103	69528.0	Mm.272846	NM_027103	ENSMUSG00000031847	1700030J22Rik	-	RIKEN cDNA 1700030J22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89476174-4	chr15	89475677	89476677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_077233)	promoter-TSS (NR_077233)	-75.0	NR_077233	100532730.0	Mm.461541	NR_077233		C230037L18Rik	-	RIKEN cDNA C230037L18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113604807-4	chr6	113604329	113605329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133937)	promoter-TSS (NM_133937)	57.0	NM_133937	101314.0	Mm.485793	NM_133937	ENSMUSG00000033940	Brk1	6720456B07Rik|AW011779	BRICK1, SCAR/WAVE actin-nucleating complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130003001-4	chr5	130002504	130003504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010368)	promoter-TSS (NM_010368)	45.0	NM_010368	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-110760659-2	chr10	110760159	110761159	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358560, intron 4 of 12)	intron (NM_001358560, intron 4 of 12)	15220.0	NM_178609	52679.0	Mm.11747	NM_178609	ENSMUSG00000020185	E2f7	A630014C11Rik|D10Ertd739e|E2F-7	E2F transcription factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81345283-4	chr7	81344792	81345792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009092)	promoter-TSS (NM_009092)	-58.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16228432-4	chr1	16227914	16228914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025303)	TTS (NM_025303)	122532.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79455601-4	chr15	79455105	79456105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13462.0	NM_001359863	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15396198-4	chr17	15395701	15396701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024203)	promoter-TSS (NM_024203)	-1.0	NM_001357822	67544.0	Mm.35039	NM_024203	ENSMUSG00000014763	Fam120b	4932442K08Rik|AW049283|AW413338|CCPG|Pgcc1|mKIAA1838	family with sequence similarity 120, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46153573-4	chr17	46153080	46154080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025649)	promoter-TSS (NM_025649)	-29.0	NM_025649	66591.0	Mm.272024	NM_025649	ENSMUSG00000034509	Mad2l1bp	0610009D16Rik|2510031P20Rik|AU018945|AW550977|C76045|CMT2A|CMT2B|Mad2lbp|mKIAA0110	MAD2L1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12159526-4	chr17	12159020	12160020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026644, intron 2 of 8)	intron (NM_026644, intron 2 of 8)	40236.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	2.5	15.5	4.5	0.0	27.0	8.0
Merged-chr6-21956970-2	chr6	21956470	21957470	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311061, intron 4 of 11)	intron (NM_001311061, intron 4 of 11)	7355.0	NM_023626	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63543900-4	chr14	63543374	63544374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177594)	promoter-TSS (NM_177594)	79.0	NM_177594	210376.0	Mm.441613	NM_177594	ENSMUSG00000035078	Mtmr9	9430075G12Rik|AA516943|AF073881|LIP-STYX|MTMR8|mMTMH3	myotubularin related protein 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40963200-4	chr19	40962700	40963700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008528, intron 4 of 16)	intron (NM_008528, intron 4 of 16)	31335.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	0.5	7.0	2.5	2.5	0.0	1.5
Merged-chr3-59152227-2	chr3	59151727	59152727	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045641, exon 1 of 1)	non-coding (NR_045641, exon 1 of 1)	1265.0	NM_001287119	140795.0	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102393708-4	chr15	102393208	102394208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12608.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79561995-4	chr3	79561502	79562502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	5677.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-10663948-4	chr8	10663403	10664403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	218551.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96699057-4	chr15	96698535	96699535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355633, intron 1 of 14)	CpG	693.0	NM_001355633	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-16956681-4	chr11	16956157	16957157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5247.0	NM_176982	319701.0	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	5.0	14.5	9.0	5.0	15.5	9.0
Merged-chr13-23555094-4	chr13	23554604	23555604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145713)	promoter-TSS (NM_145713)	72.0	NM_145713	14957.0	Mm.247046	NM_145713	ENSMUSG00000052565	Hist1h1d	H1.3|H1D|H1f3|H1s-4	histone cluster 1, H1d	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95857630-4	chr9	95857121	95858121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019864)	promoter-TSS (NM_019864)	24.0	NM_019864	245000.0	Mm.212462	NM_019864	ENSMUSG00000032409	Atr	-	ataxia telangiectasia and Rad3 related	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141952347-4	chr4	141951854	141952854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 12 of 31)	intron (NM_177868, intron 12 of 31)	-30638.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22860526-4	chr11	22860030	22861030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001169114)	promoter-TSS (NM_001169114)	-194.0	NM_001169114	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21036715-4	chr19	21036273	21037273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67937.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	42.5	76.5	40.0	20.5	51.0	39.0
Merged-chr5-122219196-4	chr5	122218679	122219679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359454, intron 3 of 7)	intron (NM_001359454, intron 3 of 7)	8892.0	NM_028752	74096.0	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-118321799-4	chr1	118321331	118322331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026472)	promoter-TSS (NM_026472)	-12.0	NM_026472	67949.0	Mm.280311	NM_026472	ENSMUSG00000026377	Nifk	AI852665|C130020J04Rik|Mki67ip	nucleolar protein interacting with the FHA domain of MKI67	protein-coding	13.0	23.0	29.5	38.0	49.5	43.5
Merged-chr14-60444367-4	chr14	60443876	60444876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR40|LTR|ERVK	66090.0	NM_001164705	72125.0	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	35.5	101.0	65.0	23.0	63.5	81.0
Merged-chr16-10741283-2	chr16	10740783	10741783	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177562, intron 22 of 22)	intron (NM_177562, intron 22 of 22)	44253.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24220793-4	chr17	24220294	24221294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028056)	promoter-TSS (NM_028056)	57.0	NM_028056	72016.0	Mm.23881	NM_028056	ENSMUSG00000024118	Tedc2	1600002H07Rik	tubulin epsilon and delta complex 2	protein-coding	39.0	60.0	55.5	31.0	76.5	67.0
Merged-chr19-16132556-4	chr19	16132059	16133059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008139)	promoter-TSS (NM_008139)	-272.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118704432-4	chr7	118703986	118704986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019580, intron 1 of 5)	intron (NM_019580, intron 1 of 5)	1252.0	NM_019580	56209.0	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	172.0	432.5	348.0	68.0	130.0	96.0
Merged-chr1-161500953-4	chr1	161500449	161501449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183391, intron 2 of 2)	intron (NM_183391, intron 2 of 2)	6292.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	35.0	60.0	52.5	19.5	37.0	26.0
Merged-chr15-5495659-4	chr15	5495154	5496154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045274)	promoter-TSS (NR_045274)	-664.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-26604443-4	chr11	26603934	26604934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-10514.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	10.0	31.0	51.5	5.0	4.0	31.5
Merged-chr3-95987929-4	chr3	95987430	95988430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045872)	TTS (NR_045872)	2420.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	203.5	428.5	331.5	185.5	426.0	333.5
Merged-chr4-155149269-2	chr4	155148769	155149769	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62665.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-38724216-4	chr9	38723715	38724715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145957, intron 6 of 18)	intron (NM_001145957, intron 6 of 18)	5947.0	NM_172767	67776.0	Mm.290950	NM_172767	ENSMUSG00000023186	Vwa5a	5830475I06Rik|AW552491|BCSC-1|E130119J22|Loh11cr2a	von Willebrand factor A domain containing 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83033580-4	chr6	83033076	83034076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291799)	promoter-TSS (NM_001291799)	-105.0	NM_001291799	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	105.0	203.0	167.0	146.0	303.0	227.0
Merged-chr3-55829018-4	chr3	55828519	55829519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030595, intron 38 of 57)	intron (NM_030595, intron 38 of 57)	-18086.0	NR_033592	71182.0	Mm.195603	NR_033592	ENSMUSG00000106572	4933417G07Rik	-	SEC13 homolog pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-52048809-3	chr9	52048282	52049282	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_023357)	promoter-TSS (NR_023357)	-77.0	NR_023357	629557.0	Mm.422775	NR_023357		Gm6981	EG629557	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	3.5	4.0	18.5	3.5	4.0	19.0
Merged-chr4-148676803-4	chr4	148676302	148677302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33485.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	53.5	232.5	60.5	5.0	40.0	30.5
Merged-chr7-84689990-4	chr7	84689500	84690500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360577)	promoter-TSS (NM_001360577)	-43.0	NM_001360582	65098.0	Mm.209349	NM_022985	ENSMUSG00000030629	Zfand6	3110005P07Rik|Awp1|Za20d3	zinc finger, AN1-type domain 6	protein-coding	2.5	3.0	8.0	3.5	1.5	1.5
Merged-chr2-153556051-1	chr2	153555551	153556551	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-26080.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0.0	2.5	0.5	0.0	0.0	0.0
Merged-chr1-193844644-4	chr1	193844125	193845125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-337095.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73034608-4	chr17	73034110	73035110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73375.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	87.5	146.0	164.5	78.5	169.5	130.5
Merged-chr15-99823560-4	chr15	99823078	99824078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113545, intron 3 of 10)	intron (NM_001113545, intron 3 of 10)	-3429.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119827971-4	chr8	119827476	119828476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	12603.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95072778-4	chr9	95072260	95073260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 12 of 15)	intron (NM_177909, intron 12 of 15)	320931.0	NR_106116	102465763.0		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34002787-4	chr13	34002231	34003231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009068)	promoter-TSS (NM_009068)	63.0	NM_001243192	20719.0	Mm.252210	NM_009254	ENSMUSG00000060147	Serpinb6a	4930482L21Rik|D330015H01Rik|PI-6|Serpinb6|Spi3|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171346264-4	chr1	171345768	171346768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012049)	promoter-TSS (NM_012049)	593.0	NM_011070	18637.0	Mm.10756	NM_011070	ENSMUSG00000006412	Pfdn2	ESTM27|W48336	prefoldin 2	protein-coding	28.0	74.0	47.5	29.5	60.5	48.5
Merged-chr4-86874295-4	chr4	86873780	86874780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290541)	promoter-TSS (NM_001290541)	-134.0	NM_001290543	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	7.0	23.0	13.0	3.5	27.5	25.0
Merged-chr3-57736992-3	chr3	57736468	57737468	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130743, intron 1 of 9)	intron (NR_130743, intron 1 of 9)	911.0	NR_130743	24017.0	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116198918-6	chr11	116198443	116199443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027107)	promoter-TSS (NM_027107)	88.0	NM_027107	69535.0	Mm.390347	NM_027107	ENSMUSG00000020778	Ten1	2310004N24Rik	TEN1 telomerase capping complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84826970-4	chr2	84826453	84827453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013899)	promoter-TSS (NM_013899)	-68.0	NM_013899	30059.0	Mm.21826	NM_013899	ENSMUSG00000027076	Timm10	Tim13|Timm13a	translocase of inner mitochondrial membrane 10	protein-coding	15.0	9.0	18.0	16.0	19.0	7.0
Merged-chr6-17635664-4	chr6	17635182	17636182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1328.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	24.0	67.5	62.5	8.5	83.5	27.0
Merged-chr13-119602410-2	chr13	119601910	119602910	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177666, intron 2 of 3)	intron (NM_001177666, intron 2 of 3)	-21409.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125649630-4	chr8	125649114	125650114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20204.0	NM_028908	74393.0	Mm.41709	NM_028908	ENSMUSG00000050930	Map10	4933403G14Rik|AI835009|mKIAA1383	microtubule-associated protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-12264318-4	chr12	12263803	12264803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	2164.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	84.5	152.5	124.5	44.5	88.0	67.5
Merged-chr8-105700698-4	chr8	105700190	105701190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286345)	promoter-TSS (NM_001286345)	-458.0	NM_001047436	56513.0	Mm.472753	NM_019695	ENSMUSG00000005699	Pard6a	0710008C04Rik|2610010A15Rik|PAR-6A|PAR6alpha|Par-6|Par6|Par6c|TAX40|Tip-40	par-6 family cell polarity regulator alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5066578-2	chr11	5066078	5067078	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1251.0	NM_001190406	78926.0	Mm.44591	NM_030228	ENSMUSG00000034201	Gas2l1	4930500E24Rik|D0Jmb1|Gar22|TU-71.1	growth arrest-specific 2 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97964940-4	chr3	97964430	97965430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033779, intron 1 of 1)	intron (NM_001033779, intron 1 of 1)	34757.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69040360-4	chr11	69039859	69040859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5278.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	7.5	22.5	14.0	19.5	9.0	17.5
Merged-chr7-90016669-4	chr7	90016172	90017172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12487.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	29.0	42.0	76.5	36.0	45.5	50.5
Merged-chr18-37924420-4	chr18	37923901	37924901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305981, intron 1 of 28)	intron (NM_001305981, intron 1 of 28)	11075.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103007950-4	chr14	103007435	103008435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 2 of 2)	Lx10|LINE|L1	-25298.0	NM_177715	239217.0	Mm.246466	NM_177715	ENSMUSG00000098557	Kctd12	AU046135|AW538430|Pfet1|Pfetin	potassium channel tetramerisation domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76072827-2	chr15	76072327	76073327	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164600, intron 4 of 10)	intron (NM_001164600, intron 4 of 10)	-3043.0	NM_001310542	105782.0	Mm.25568	NM_134089	ENSMUSG00000022568	Scrib	AI118201|CRIB|Crc|SCRIB1|Scrb1|mKIAA0147|vartul	scribbled planar cell polarity	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44453503-4	chr7	44452994	44453994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198250, intron 2 of 2)	intron (NM_198250, intron 2 of 2)	11007.0	NM_198250	272381.0	Mm.44173	NM_198250	ENSMUSG00000047085	Lrrc4b	A830007M12|Lrig4	leucine rich repeat containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134898387-4	chr6	134897894	134898894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167696)	promoter-TSS (NM_001167696)	-200.0	NM_001362051	14760.0	Mm.4787	NM_008157	ENSMUSG00000032641	Gpr19	-	G protein-coupled receptor 19	protein-coding	101.5	180.5	114.5	92.0	195.5	129.5
Merged-chr4-133212596-4	chr4	133212080	133213080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008154)	promoter-TSS (NM_008154)	-44.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	5.5	1.5	6.5	5.0	12.0	4.5
Merged-chr11-79584367-2	chr11	79583867	79584867	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6845.0	NM_175543	268451.0	Mm.130656	NM_175543	ENSMUSG00000017639	Rab11fip4	A730072L08Rik|RAB11-FIP4|mKIAA1821	RAB11 family interacting protein 4 (class II)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40446729-4	chr12	40446317	40447317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	764.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70897505-4	chr8	70897013	70898013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029751)	promoter-TSS (NM_029751)	-70.0	NM_029751	76808.0	Mm.379251	NM_029751	ENSMUSG00000045128	Rpl18a	2510019J09Rik	ribosomal protein L18A	protein-coding	29.0	101.0	44.5	31.0	65.5	66.0
Merged-chr3-89773402-4	chr3	89772902	89773902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027315)	promoter-TSS (NM_027315)	-2.0	NR_130957	74034.0	Mm.386816	NR_130957	ENSMUSG00000042579	4632404H12Rik	-	RIKEN cDNA 4632404H12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119248164-4	chr9	119247649	119248649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359582, intron 13 of 18)	intron (NM_001359582, intron 13 of 18)	-16457.0	NR_033303	109280.0	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	0.0	3.5	2.0	0.0	3.0	1.5
Merged-chr12-3804139-4	chr12	3803644	3804644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-2836.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26158132-4	chr8	26157616	26158616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199042)	promoter-TSS (NM_199042)	-53.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153108511-4	chr2	153107995	153108995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010407)	promoter-TSS (NM_010407)	27.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr2-18835694-4	chr2	18835185	18836185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33867.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-61267115-2	chr19	61266615	61267615	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38697.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68278685-2	chr10	68278185	68279185	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023598)	promoter-TSS (NM_023598)	41.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	50.0	164.5	87.0	49.0	136.5	79.5
Merged-chr13-28601004-4	chr13	28600493	28601493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045054, intron 6 of 7)	intron (NR_045054, intron 6 of 7)	109880.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-45142793-4	chr16	45142309	45143309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028756, intron 6 of 6)	intron (NM_028756, intron 6 of 6)	15864.0	NM_001356453	74102.0	Mm.264984	NM_028756	ENSMUSG00000022664	Slc35a5	1010001J06Rik|AU021179|BB097433|D16Ertd450e|D730043G07Rik	solute carrier family 35, member A5	protein-coding	15.0	24.0	19.0	21.0	40.0	26.0
Merged-chr2-75731296-4	chr2	75730809	75731809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26646.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	96.0	286.5	177.5	78.0	197.0	136.5
Merged-chr16-35983278-4	chr16	35982758	35983758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008465)	promoter-TSS (NM_008465)	-105.0	NM_008465	16646.0	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34759442-6	chr18	34758892	34759892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357456)	promoter-TSS (NM_001357456)	65.0	NM_001357457	66306.0	Mm.29424	NM_175104	ENSMUSG00000034300	Fam53c	2810012G03Rik|Gm21179	family with sequence similarity 53, member C	protein-coding	0.0	22.5	17.0	14.0	34.5	18.5
Merged-chr2-179976840-4	chr2	179976335	179977335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033782)	promoter-TSS (NR_033782)	-18.0	NR_033782	66730.0	Mm.31773	NR_033782	ENSMUSG00000085704	4921531C22Rik	-	RIKEN cDNA 4921531C22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8689730-4	chr11	8689247	8690247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25212.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	225.0	518.0	462.5	205.5	488.5	334.0
Merged-chr2-93435103-4	chr2	93434622	93435622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271430, intron 2 of 8)	intron (NM_001271430, intron 2 of 8)	-13115.0	NR_105967	102465605.0		NR_105967	ENSMUSG00000099238	Mir7001	Gm27886|mmu-mir-7001	microRNA 7001	ncRNA	5.0	3.0	6.0	10.5	13.0	9.5
Merged-chr18-75695920-2	chr18	75695420	75696420	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 1 of 11)	intron (NM_201354, intron 1 of 11)	1776.0	NM_201354	269037.0	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	1.0	10.5	13.0	3.5	6.0	18.0
Merged-chr10-19107987-4	chr10	19107509	19108509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-33740.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	1.0	6.5	17.0	17.5	18.5	6.0
Merged-chr14-66868746-4	chr14	66868253	66869253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009955)	promoter-TSS (NM_009955)	-97.0	NM_001034881	432870.0	Mm.425890	NM_001034881	ENSMUSG00000075553	Gm5464	EG432870	predicted gene 5464	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19129254-1	chr7	19128754	19129754	+	1000.0	f1_c57bl6.idr	intron (NM_175530, intron 1 of 1)	B4A|SINE|B4	9395.0	NM_175530	243867.0	Mm.230830	NM_175530	ENSMUSG00000050428	Fbxo46	20D7-FC4|4932704E22Rik|Fbxo34l	F-box protein 46	protein-coding	0.0	0.0	0.0	0.5	0.0	1.5
Merged-chr10-80116612-2	chr10	80116112	80117112	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_126043, exon 1 of 11)	non-coding (NR_126043, exon 1 of 11)	809.0	NM_001301854	20869.0	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-38562388-2	chr5	38561888	38562888	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011715)	promoter-TSS (NM_011715)	-793.0	NM_011715	22388.0	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	28.5	125.0	57.5	40.0	115.5	74.5
Merged-chr11-86626388-2	chr11	86625888	86626888	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 7 of 11)	B3|SINE|B2	-42230.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69503833-4	chr12	69503325	69504325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-28275.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	4.5	7.5	3.5	4.5	2.0	4.0
Merged-chr3-53459673-4	chr3	53459177	53460177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172501, intron 3 of 6)	intron (NM_172501, intron 3 of 6)	3581.0	NM_172501	212114.0	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-151995782-2	chr4	151995282	151996282	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172705, intron 1 of 3)	CpG	397.0	NM_172705	230936.0	Mm.25582	NM_172705	ENSMUSG00000047777	Phf13	BC029632|Phf5|SPOC1	PHD finger protein 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79985067-4	chr10	79984554	79985554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001003949)	promoter-TSS (NM_001003949)	-794.0	NM_001003949	216157.0	Mm.29442	NM_001003949	ENSMUSG00000013858	Tmem259	AC087114.7gm2|ORF61|R32184_3|mFLJ00277	transmembrane protein 259	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10577344-4	chr19	10576775	10577775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302218)	promoter-TSS (NM_001302218)	111.0	NM_028411	72982.0	Mm.391194	NM_028411	ENSMUSG00000024666	Tmem138	1700113I01Rik|2900055D14Rik	transmembrane protein 138	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138262305-4	chr4	138261780	138262780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190978)	promoter-TSS (NM_001190978)	29.0	NM_010623	16559.0	Mm.271936	NM_010623	ENSMUSG00000028758	Kif17	5930435E01Rik|AW492270|Kif17b|mKIAA1405	kinesin family member 17	protein-coding	8.0	14.0	13.0	3.5	11.5	11.0
Merged-chr10-8518103-2	chr10	8517603	8518603	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 1 of 7)	CpG	722.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166493102-4	chr2	166492629	166493629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45678.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65021701-4	chr9	65021211	65022211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021345)	promoter-TSS (NM_021345)	6.0	NM_021345	57874.0	Mm.308180	NM_021345	ENSMUSG00000033629	Hacd3	4930523M17Rik|AW742319|B-ind1|Hcad3|Hspc121|Ptplad1	3-hydroxyacyl-CoA dehydratase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-6170535-4	chr7	6170070	6171070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1943.0	NM_028316	72667.0	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25510798-4	chr9	25510303	25511303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	29206.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-40084584-4	chr1	40084058	40085058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360801)	promoter-TSS (NM_001360801)	-156.0	NM_010555	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-80268190-2	chr2	80267690	80268690	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24280.0	NM_177256	320769.0	Mm.60992	NM_177256	ENSMUSG00000050114	Prdx6b	1-cysPrx-P1|4930414C22Rik|Aop2-rs1|Prdx5-rs1|Prdx6-ps1|Prdx6-rs1|Prdx6-rs1-ps	peroxiredoxin 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88508712-4	chr5	88508233	88509233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19164.0	NM_152839	16069.0	Mm.1192	NM_152839	ENSMUSG00000067149	Jchain	9530090F24Rik|AI323815|Igj|Jch	immunoglobulin joining chain	protein-coding	10.5	8.5	7.0	10.5	8.0	7.0
Merged-chr10-41519326-5	chr10	41518825	41519825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016898)	promoter-TSS (NM_016898)	-175.0	NM_016898	53599.0	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-16302542-2	chr16	16302042	16303042	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038046)	promoter-TSS (NR_038046)	-423.0	NR_038046	70120.0	Mm.37486	NM_198246	ENSMUSG00000022792	Yars2	2210023C10Rik|tyrRS	tyrosyl-tRNA synthetase 2 (mitochondrial)	protein-coding	2.5	29.5	26.0	3.0	25.5	23.5
Merged-chr10-77964192-4	chr10	77963696	77964696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 4 of 33)	intron (NM_138301, intron 4 of 33)	5676.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4793990-4	chr19	4793493	4794493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290122)	promoter-TSS (NM_001290122)	16.0	NM_001290124	19653.0	Mm.426069	NM_009032	ENSMUSG00000094936	Rbm4	4921506I22Rik|Lark1|Mlark|Rbm4a|lark	RNA binding motif protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84689226-4	chr8	84688691	84689691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164560)	promoter-TSS (NM_001164560)	-56.0	NM_001164559	212528.0	Mm.275720	NM_198020	ENSMUSG00000001909	Trmt1	6720406L13Rik|6720477L24|D8Ertd812e	tRNA methyltransferase 1	protein-coding	10.5	34.0	16.0	13.5	28.5	20.0
Merged-chr15-99122634-7	chr15	99122150	99123150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-4195.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	64.0	140.5	117.0	49.5	170.0	140.5
Merged-chr5-31220695-4	chr5	31220214	31221214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008014)	promoter-TSS (NM_008014)	-169.0	NM_008014	14208.0	Mm.14501	NM_008014	ENSMUSG00000029147	Ppm1g	AI385652|Fin13	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21710141-4	chr13	21709651	21710651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5992.0	NM_178199	319185.0		NM_178199	ENSMUSG00000094338	Hist1h2bl	H2b-291a	histone cluster 1, H2bl	protein-coding	0.0	4.0	6.0	2.0	5.5	4.5
Merged-chr16-23305913-4	chr16	23305408	23306408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252506, intron 1 of 6)	intron (NM_001252506, intron 1 of 6)	15438.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87255858-4	chr17	87255360	87256360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_139295, exon 4 of 4)	3' UTR (NM_139295, exon 4 of 4)	10087.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	90.5	109.5	129.0	196.0	199.0	199.0
Merged-chr7-118705764-4	chr7	118705266	118706266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019580)	promoter-TSS (NM_019580)	-28.0	NM_019580	56209.0	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	107.0	248.0	250.0	71.5	122.5	158.5
Merged-chr5-99234632-4	chr5	99234124	99235124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145839, exon 5 of 14)	exon (NM_145839, exon 5 of 14)	18303.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57248490-4	chr17	57247968	57248968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134125)	promoter-TSS (NM_134125)	-779.0	NM_030084	78308.0	Mm.28468	NM_030084	ENSMUSG00000005823	Gpr108	1810015L19Rik|AA589464|C79132|Lustr2	G protein-coupled receptor 108	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60769622-4	chr11	60769130	60770130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009410, intron 1 of 18)	MTA_Mm|LTR|ERVL-MaLR	7735.0	NM_009410	21975.0	Mm.10708	NM_009410	ENSMUSG00000002814	Top3a	-	topoisomerase (DNA) III alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67026085-2	chr10	67025585	67026585	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110511, intron 2 of 6)	ID_B1|SINE|B4	21010.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164856893-2	chr2	164856393	164857393	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011125, exon 2 of 16)	exon (NM_011125, exon 2 of 16)	815.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96901324-4	chr10	96900807	96901807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-134461.0	NR_045358	75301.0	Mm.108650	NR_045358	ENSMUSG00000111924	4930556N09Rik	-	RIKEN cDNA 4930556N09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32534132-4	chr11	32533638	32534638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	872.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	60.0	118.5	100.0	43.5	131.5	145.5
Merged-chr9-59295466-4	chr9	59294958	59295958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359282, intron 1 of 6)	intron (NM_001359282, intron 1 of 6)	3886.0	NM_028121	72141.0	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137831714-4	chr5	137831216	137832216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153510, intron 2 of 6)	MLTR14|LTR|ERV1	4562.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21695500-4	chr16	21695068	21696068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001881)	promoter-TSS (NM_001001881)	-903.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152227365-1	chr2	152226865	152227865	+	1000.0	f0_c57.idr	intron (NM_007788, intron 1 of 12)	CpG	525.0	NM_007788	12995.0	Mm.23692	NM_007788	ENSMUSG00000074698	Csnk2a1	CK2|Csnk2a1-rs4	casein kinase 2, alpha 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66103570-4	chr15	66103052	66104052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152923, intron 1 of 14)	intron (NM_152923, intron 1 of 14)	-126748.0	NM_001145096	654498.0	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27188398-4	chr3	27187903	27188903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	5399.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69998250-4	chr11	69997728	69998728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291125, intron 3 of 4)	intron (NM_001291125, intron 3 of 4)	766.0	NM_001291127	78246.0	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-5049258-3	chr16	5048750	5049750	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356320)	promoter-TSS (NM_001356320)	660.0	NM_001359747	74022.0	Mm.21652	NM_028720	ENSMUSG00000022536	Glyr1	2810419J22Rik|3930401K13Rik|AW545332|Npac	glyoxylate reductase 1 homolog (Arabidopsis)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31113729-4	chr6	31113226	31114226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-50633.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-110880511-2	chr1	110880011	110881011	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	97082.0	NM_001356415	227485.0	Mm.322070	NM_001081386	ENSMUSG00000047216	Cdh19	-	cadherin 19, type 2	protein-coding	1.5	11.5	1.0	1.5	0.0	0.0
Merged-chr1-64448199-4	chr1	64447698	64448698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84606.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46846141-3	chr11	46845634	46846634	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35335.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	8.5	10.0	15.5	9.5	65.5	45.5
Merged-chr12-82225961-4	chr12	82225450	82226450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 1 of 23)	intron (NM_001167983, intron 1 of 23)	55934.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25386289-4	chr7	25385773	25386773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_073028)	TTS (NR_073028)	3839.0	NM_001039507	16890.0	Mm.158548	NM_010719	ENSMUSG00000003123	Lipe	4933403G17Rik|HSL	lipase, hormone sensitive	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-50053423-4	chr18	50052912	50053912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134131, exon 1 of 2)	5' UTR (NM_134131, exon 1 of 2)	130.0	NM_134131	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	59.0	147.5	79.0	56.0	112.5	58.0
Merged-chr14-73170992-2	chr14	73170492	73171492	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134083, intron 10 of 14)	intron (NM_134083, intron 10 of 14)	28207.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70992570-3	chr17	70992073	70993073	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2057.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	89.5	212.0	139.5	132.0	358.0	339.0
Merged-chr1-37559845-4	chr1	37559339	37560339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18823.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-78050736-3	chr2	78050260	78051260	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_108098)	promoter-TSS (NR_108098)	-417.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107763851-2	chr13	107763351	107764351	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	76454.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21017323-4	chr5	21016827	21017827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011203, intron 4 of 17)	Lx5|LINE|L1	17920.0	NM_001356592	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	5.0	23.5	17.5	5.0	17.0	17.0
Merged-chr9-7843090-2	chr9	7842590	7843590	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6033.0	NM_007465	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-28420027-4	chr13	28419532	28420532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	277548.0	NM_023746	28078.0	Mm.155058	NM_023746	ENSMUSG00000017064	Prl5a1	1600013P04Rik|D13Wsu14e|Ghd24|PLP-L|Prlpl	prolactin family 5, subfamily a, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-84972136-4	chr16	84971631	84972631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045889)	promoter-TSS (NR_045889)	-80.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46847835-2	chr8	46847335	46848335	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008391)	TTS (NM_008391)	108090.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107022503-4	chr13	107021999	107022999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145779)	promoter-TSS (NM_001145779)	-71.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17901887-4	chr17	17901354	17902354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14030.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	1.5	6.5	3.5	1.0	6.5	1.0
Merged-chr15-74988426-1	chr15	74987926	74988926	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-4996.0	NM_020498	57248.0	Mm.358339	NM_020498	ENSMUSG00000022586	Ly6i	AI789751|Ly-6I|Ly-6M	lymphocyte antigen 6 complex, locus I	protein-coding	181.0	490.0	307.0	178.5	443.5	281.5
Merged-chr7-30590527-2	chr7	30590027	30591027	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153655, intron 2 of 3)	intron (NR_153655, intron 2 of 3)	1147.0	NR_106134	102465774.0		NR_106134	ENSMUSG00000098553	Mir3569	Gm27279|mmu-mir-3569	microRNA 3569	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42018083-4	chr19	42017578	42018578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	-17960.0	NM_020033	56642.0	Mm.143737	NM_020033	ENSMUSG00000025172	Ankrd2	Arpp|mArpp	ankyrin repeat domain 2 (stretch responsive muscle)	protein-coding	39.0	51.0	72.0	25.5	114.5	73.0
Merged-chr10-81356509-4	chr10	81356011	81357011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028657)	promoter-TSS (NM_028657)	-980.0	NM_028657	73822.0	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1|gr	major facilitator superfamily domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73446333-2	chr12	73445833	73446833	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36770.0	NR_046013	380765.0	Mm.490476	NR_046013	ENSMUSG00000056359	D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr14-8214090-4	chr14	8213600	8214600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027782)	promoter-TSS (NM_027782)	19.0	NM_027782	71393.0	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-74807984-4	chr13	74807494	74808494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009817)	promoter-TSS (NM_009817)	-34.0	NM_009817	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	33.5	85.5	72.5	7.0	15.5	17.0
Merged-chr9-20385165-4	chr9	20384641	20385641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004190)	promoter-TSS (NM_001004190)	17.0	NM_001004190	434377.0	Mm.379669	NM_001004190	ENSMUSG00000045519	Zfp560	2310030G09Rik|Znf560	zinc finger protein 560	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32405493-4	chr18	32404998	32405998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 1 of 17)	ORR1F|LTR|ERVL-MaLR	-27214.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0.0	1.0	5.5	0.0	1.0	1.5
Merged-chr12-81669144-2	chr12	81668644	81669644	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37895.0	NM_001033149	69480.0	Mm.130002	NM_001033149	ENSMUSG00000042734	Ttc9	-	tetratricopeptide repeat domain 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46283036-4	chr17	46282522	46283522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252473)	promoter-TSS (NM_001252473)	4.0	NM_001252475	74094.0	Mm.284594	NM_028751	ENSMUSG00000012296	Tjap1	0610041D19Rik|AI415281|AW121008|Pilt|Tjp4	tight junction associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-87856787-2	chr10	87856287	87857287	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CACAG)n|Simple_repeat|Simple_repeat	-1478.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20468841-4	chr11	20468321	20469321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-74432.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46752309-4	chr17	46751808	46752808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305990)	promoter-TSS (NM_001305990)	-94.0	NM_001305988	72029.0	Mm.240325	NM_028065	ENSMUSG00000023973	Cnpy3	1600025D17Rik|2410050O22Rik|AI413153|CAG4A|ERDA5|PRAT4A|Tnrc5	canopy FGF signaling regulator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91793796-4	chr16	91793295	91794295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 5 of 15)	intron (NM_001110276, intron 5 of 15)	64424.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70175861-1	chr14	70175361	70176361	+	1000.0	f0_balb.idr	intron (NM_145978, intron 1 of 9)	intron (NM_145978, intron 1 of 9)	954.0	NM_001253736	213019.0	Mm.283968	NM_145978	ENSMUSG00000022090	Pdlim2	4732462F18Rik|Slim	PDZ and LIM domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-30804080-4	chr10	30803571	30804571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358841)	promoter-TSS (NM_001358841)	-745.0	NM_001358842	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124014990-4	chr5	124014491	124015491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	17269.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97175211-4	chr15	97174721	97175721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7977.0	NR_155279	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85832459-2	chr11	85831959	85832959	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_077059)	promoter-TSS (NR_077059)	-71.0	NR_077059	69909.0	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75844326-2	chr14	75843826	75844826	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009429)	promoter-TSS (NM_009429)	638.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107082370-4	chr4	107081887	107082887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346552, intron 6 of 6)	MTD|LTR|ERVL-MaLR	-14504.0	NM_172873	242603.0	Mm.257231	NM_172873	ENSMUSG00000047636	Cdcp2	D030010E02Rik	CUB domain containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117504755-2	chr8	117504255	117505255	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 2 of 32)	intron (NM_172285, intron 2 of 32)	6480.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100216184-4	chr7	100215690	100216690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11417.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-28259604-4	chr5	28259117	28260117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-13829.0	NM_001310512	269637.0	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55099484-4	chr19	55098972	55099972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008149)	promoter-TSS (NM_008149)	5.0	NM_008149	14732.0	Mm.210196	NM_008149	ENSMUSG00000024978	Gpam	GPAT|GPAT-1|GPAT1|P90	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142440693-4	chr5	142440191	142441191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 2 of 8)	intron (NM_199068, intron 2 of 8)	-23240.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-89338757-4	chr7	89338262	89339262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360745)	promoter-TSS (NM_001360745)	25.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72317812-4	chr8	72317302	72318302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1260.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	77.0	298.5	168.0	99.0	217.5	116.5
Merged-chr9-13540990-4	chr9	13540475	13541475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79014.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	46.0	38.5	25.5	9.5	62.5	45.0
Merged-chr4-53512652-4	chr4	53512130	53513130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133891, intron 3 of 15)	L2b|LINE|L2	72217.0	NM_133891	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100600130-4	chr15	100599668	100600668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304965)	promoter-TSS (NM_001304965)	-184.0	NM_001304965	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	1.5	14.5	9.5	2.5	15.5	13.0
Merged-chr1-131083734-1	chr1	131083234	131084234	+	1000.0	f0_balb.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	14109.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	27.0	37.0	32.5	21.0	51.0	35.0
Merged-chr5-141080536-4	chr5	141080042	141081042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-79946.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75848268-4	chr7	75847763	75848763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182782)	promoter-TSS (NM_182782)	-75.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116130186-4	chr11	116129694	116130694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178802, intron 1 of 5)	intron (NM_178802, intron 1 of 5)	934.0	NM_178802	338364.0	Mm.439976	NM_178802	ENSMUSG00000054517	Trim65	4732463G12Rik	tripartite motif-containing 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45488837-4	chr7	45488325	45489325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027903)	promoter-TSS (NM_027903)	-20.0	NM_027903	71755.0	Mm.34208	NM_027903	ENSMUSG00000011382	Dhdh	1300018L09Rik|AA591799|B830008H07Rik|Xld-1|Xld1	dihydrodiol dehydrogenase (dimeric)	protein-coding	8.0	2.0	5.0	0.0	1.0	0.0
Merged-chr4-138217134-4	chr4	138216623	138217623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122897)	promoter-TSS (NM_001122897)	-4.0	NM_001356432	15441.0	Mm.348429	NM_010470	ENSMUSG00000028759	Hp1bp3	Hp1bp74	heterochromatin protein 1, binding protein 3	protein-coding	10.5	22.0	41.5	6.5	14.5	38.5
Merged-chr9-90226574-4	chr9	90226069	90227069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 5 of 12)	intron (NM_194334, intron 5 of 12)	44200.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-33125757-4	chr12	33125261	33126261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015602, intron 4 of 5)	MLT1J|LTR|ERVL-MaLR	21825.0	NR_015602	320046.0	Mm.208337	NR_015602	ENSMUSG00000052125	F730043M19Rik	-	RIKEN cDNA F730043M19 gene	ncRNA	5.5	11.0	4.5	2.5	8.5	14.0
Merged-chr10-62547072-4	chr10	62546581	62547581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19636.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-21383748-4	chr17	21383255	21384255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172486)	promoter-TSS (NM_172486)	7.0	NM_172486	210503.0	Mm.33443	NM_172486	ENSMUSG00000062743	Zfp677	A830058L05Rik|Tce8	zinc finger protein 677	protein-coding	34.5	60.5	73.5	13.5	64.5	67.0
Merged-chr3-81050042-3	chr3	81049550	81050550	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	13634.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	17.5	62.5	41.0	23.5	57.5	51.5
Merged-chr6-48832663-4	chr6	48832183	48833183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8305.0	NM_023056	65963.0	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-122955503-4	chr4	122954990	122955990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029662, intron 3 of 13)	intron (NM_029662, intron 3 of 13)	5698.0	NM_029662	76574.0	Mm.331842	NM_029662	ENSMUSG00000028655	Mfsd2a	1700018O18Rik|Mfsd2|NLS1	major facilitator superfamily domain containing 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67244101-4	chr7	67243593	67244593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291195, intron 8 of 10)	intron (NM_001291195, intron 8 of 10)	21477.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34368118-4	chr6	34367611	34368611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008012, intron 9 of 9)	intron (NM_008012, intron 9 of 9)	13965.0	NM_008012	14187.0	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-12501270-4	chr4	12500773	12501773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-329258.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86575700-4	chr4	86575196	86576196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178376)	promoter-TSS (NM_178376)	23.0	NM_178376	68441.0	Mm.31178	NM_178376	ENSMUSG00000070934	Rraga	1300010C19Rik|AI255374|FIP-1|RAGA	Ras-related GTP binding A	protein-coding	0.0	1.0	0.0	0.0	1.5	0.5
Merged-chr6-71950829-4	chr6	71950328	71951328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009088, exon 18 of 34)	exon (NM_009088, exon 18 of 34)	41775.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23585132-4	chr13	23584636	23585636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001290530)	TTS (NM_001290530)	834.0	NM_001290530	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-108660790-4	chr5	108660308	108661308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199011)	promoter-TSS (NM_199011)	22.0	NM_001357029	110524.0	Mm.260921	NM_199011	ENSMUSG00000004815	Dgkq	110kDa|DAGK|DAGK7|Dagk4|Dgkd	diacylglycerol kinase, theta	protein-coding	8.5	16.0	17.5	18.5	20.0	16.0
Merged-chr15-79687919-4	chr15	79687431	79688431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028792)	promoter-TSS (NM_028792)	-59.0	NM_028792	74158.0	Mm.323393	NM_028792	ENSMUSG00000022426	Josd1	1300006C06Rik|mKIAA0063	Josephin domain containing 1	protein-coding	91.5	302.5	237.5	153.5	346.5	201.5
Merged-chr6-15726634-4	chr6	15726133	15727133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 2 of 4)	intron (NM_175088, intron 2 of 4)	5972.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95805215-4	chr15	95804726	95805726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	14383.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-80883338-4	chr13	80882824	80883824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153410)	promoter-TSS (NR_153410)	-60.0	NR_153410	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27874085-4	chr15	27873577	27874577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 10 of 56)	intron (NM_001081302, intron 10 of 56)	151771.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-108449013-5	chr5	108448506	108449506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172883)	promoter-TSS (NM_172883)	94.0	NM_001359977	243197.0	Mm.106818	NM_172883	ENSMUSG00000029490	Mfsd7a	4732482E20Rik|Mfsd7|Slc49a3	major facilitator superfamily domain containing 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74839128-4	chr11	74838628	74839628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010813, intron 4 of 5)	intron (NM_010813, intron 4 of 5)	8204.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75589096-2	chr11	75588596	75589596	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008850, intron 1 of 11)	intron (NM_008850, intron 1 of 11)	1017.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107889963-5	chr4	107889418	107890418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347160)	promoter-TSS (NM_001347160)	19.0	NM_028754	74098.0	Mm.274853	NM_028754	ENSMUSG00000028608	0610037L13Rik	1110008H16Rik	RIKEN cDNA 0610037L13 gene	protein-coding	3.5	8.0	8.0	6.0	27.5	1.5
Merged-chr5-92525099-4	chr5	92524551	92525551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19394.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-31313472-4	chr10	31312968	31313968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027168)	promoter-TSS (NM_027168)	63.0	NM_027168	69692.0	Mm.245537	NM_027168	ENSMUSG00000000295	Hddc2	2310057G13Rik	HD domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3851770-4	chr19	3851271	3852271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013490)	promoter-TSS (NM_013490)	-2.0	NM_001271496	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-105898545-2	chr14	105898045	105899045	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1726.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-140817030-4	chr6	140816527	140817527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_A_Mam|LINE|RTE-X	190142.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166745985-4	chr2	166745482	166746482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32150.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127487438-3	chr3	127486949	127487949	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	11666.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	25.5	32.0	63.0	2.0	3.5	2.0
Merged-chr17-47395643-5	chr17	47395104	47396104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008189, exon 2 of 4)	exon (NM_008189, exon 2 of 4)	5002.0	NM_008189	14913.0	Mm.16224	NM_008189	ENSMUSG00000023982	Guca1a	GC-A|Gcap1|Guca1|mGCAP1	guanylate cyclase activator 1a (retina)	protein-coding	49.5	141.5	101.5	39.0	99.0	52.0
Merged-chr3-97211410-4	chr3	97210905	97211905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029933, intron 7 of 9)	intron (NM_029933, intron 7 of 9)	15959.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-32479873-4	chr6	32479318	32480318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-31323.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70066170-4	chr14	70065663	70066663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11282.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43569500-4	chr17	43568991	43569991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	1040.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	52.0	111.0	68.5	75.0	129.5	93.5
Merged-chr10-19584309-4	chr10	19583809	19584809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7640.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	4.5	11.0	14.0	4.5	9.5	15.0
Merged-chr8-11437974-2	chr8	11437474	11438474	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009932, exon 34 of 48)	exon (NM_009932, exon 34 of 48)	-39955.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59727621-4	chr9	59727126	59728126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	19862.0	NM_001033498	546134.0	Mm.297580	NM_001033498	ENSMUSG00000074259	Gramd2	BC064463|Gramd2a	GRAM domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85555332-4	chr8	85554825	85555825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019794)	promoter-TSS (NM_019794)	-54.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	39.5	122.0	81.0	47.5	109.0	69.5
Merged-chr11-54990562-2	chr11	54990062	54991062	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 19 of 24)	intron (NR_138556, intron 19 of 24)	-27622.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-5125943-4	chr7	5125437	5126437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009028)	promoter-TSS (NM_009028)	13.0	NM_009028	19428.0	Mm.322186	NM_009028	ENSMUSG00000083649	Rasl2-9	M2|Ran|Ran/M2|Rasl2-9-ps	RAS-like, family 2, locus 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86242364-3	chr12	86241842	86242842	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027405, intron 1 of 9)	intron (NM_027405, intron 1 of 9)	484.0	NM_001324488	70373.0	Mm.252967	NM_027405	ENSMUSG00000021254	Gpatch2l	1700020O03Rik|4732487G21Rik|A630090I05Rik|Kiaa1152	G patch domain containing 2 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25754418-4	chr8	25753905	25754905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028102)	promoter-TSS (NM_028102)	8.0	NM_001361595	72108.0	Mm.246875	NM_028102	ENSMUSG00000061313	Ddhd2	2010305K11Rik|SAMWD1|mKIAA0725	DDHD domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55967044-4	chr16	55966544	55967544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024218, intron 2 of 5)	intron (NM_024218, intron 2 of 5)	769.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-116978402-4	chr2	116977900	116978900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78248.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90199220-7	chr16	90198639	90199639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CACG)n|Simple_repeat|Simple_repeat	-21603.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-190911772-4	chr1	190911268	190912268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178775)	promoter-TSS (NM_178775)	2.0	NM_178775	320119.0	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	56.0	96.5	76.5	43.0	80.5	81.0
Merged-chr15-5116513-4	chr15	5116012	5117012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026069)	promoter-TSS (NM_026069)	-101.0	NM_026069	67281.0	Mm.10474	NM_026069	ENSMUSG00000041841	Rpl37	3110005M08Rik	ribosomal protein L37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-75278316-4	chr4	75277804	75278804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025849)	promoter-TSS (NM_025849)	-12.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-16875903-4	chr12	16875396	16876396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19082.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	115.5	263.5	211.5	105.0	255.0	202.0
Merged-chr2-124927575-4	chr2	124927075	124928075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140552.0	NM_175034	317750.0	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36563302-4	chr5	36562793	36563793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	19104.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	78.5	118.5	115.0	69.0	166.0	93.0
Merged-chr8-45410761-2	chr8	45410261	45411261	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_126166)	promoter-TSS (NM_126166)	-142.0	NM_126166	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-151057554-4	chr4	151057060	151058060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009498, intron 1 of 4)	CpG	393.0	NM_009498	22319.0	Mm.273930	NM_009498	ENSMUSG00000028955	Vamp3	D130027G05Rik|VAMP-3|ceb	vesicle-associated membrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54727566-4	chr11	54727073	54728073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178626, intron 3 of 5)	intron (NM_178626, intron 3 of 5)	60130.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91405786-4	chr16	91405284	91406284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008349)	promoter-TSS (NM_008349)	-451.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-76529277-4	chr5	76528783	76529783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027270)	promoter-TSS (NM_027270)	-24.0	NM_001359372	69940.0	Mm.403233	NM_027270	ENSMUSG00000036435	Exoc1	2810407P21Rik|A730011E05Rik|SEC3|Sec3l1|Sec3p	exocyst complex component 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73584750-4	chr12	73584255	73585255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313977)	promoter-TSS (NM_001313977)	-41.0	NM_001313977	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128360767-4	chr2	128360243	128361243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028590, intron 1 of 2)	intron (NR_028590, intron 1 of 2)	68608.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	15.5	18.5	21.5	15.5	18.5	20.5
Merged-chr12-102333313-4	chr12	102332794	102333794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 3 of 9)	intron (NM_177620, intron 3 of 9)	49653.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	17.0	19.5	9.5	12.0	10.5	8.0
Merged-chr18-9552699-5	chr18	9552135	9553135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	66834.0	NM_007593	26369.0	Mm.195831	NM_007593	ENSMUSG00000050996	Cetn1	caltractin	centrin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85895698-4	chr1	85895210	85896210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022417, intron 1 of 5)	intron (NM_022417, intron 1 of 5)	1200.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29055247-4	chr2	29054735	29055735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166705)	promoter-TSS (NM_001166705)	-169.0	NM_001166705	329375.0	Mm.425079	NM_001085514	ENSMUSG00000079502	Cfap77	1700101E01Rik|Gm823	cilia and flagella associated protein 77	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120562595-2	chr8	120562095	120563095	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 2 of 15)	intron (NM_001145896, intron 2 of 15)	23899.0	NR_106159	102466849.0		NR_106159	ENSMUSG00000098280	Mir7687	Gm27573|mmu-mir-7687	microRNA 7687	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-129234309-4	chr8	129233849	129234849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153780)	promoter-TSS (NM_153780)	-303.0	NM_153780	72139.0	Mm.426514	NM_153780	ENSMUSG00000071302	2610044O15Rik8	2610044O15Rik	RIKEN cDNA 2610044O15 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73472925-2	chr15	73472425	73473425	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39635.0	NR_152151	105841.0	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124808850-4	chr6	124808368	124809368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001306052)	promoter-TSS (NM_001306052)	-17.0	NM_001306052	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31105275-2	chr17	31104775	31105775	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 6 of 14)	intron (NM_009593, intron 6 of 14)	24336.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	0.0	1.0	6.0	0.0	3.0	6.0
Merged-chr1-165771774-4	chr1	165771269	165772269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149310, intron 4 of 4)	MIR|SINE|MIR	8011.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85311211-4	chr11	85310721	85311721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016910)	promoter-TSS (NM_016910)	-33.0	NM_016910	53892.0	Mm.45609	NM_016910	ENSMUSG00000020525	Ppm1d	AV338790|Wip1	protein phosphatase 1D magnesium-dependent, delta isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128232826-2	chr10	128232326	128233326	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164081, intron 1 of 28)	intron (NM_001164081, intron 1 of 28)	763.0	NM_001136082	21853.0	Mm.6458	NM_011589	ENSMUSG00000039994	Timeless	C77407|Debt69|tim	timeless circadian clock 1	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr6-122564823-2	chr6	122564323	122565323	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009645)	TTS (NM_009645)	11014.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110305210-5	chr9	110304725	110305725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081381)	promoter-TSS (NM_001081381)	33.0	NM_001081381	72341.0	Mm.374250	NM_001081381	ENSMUSG00000054836	Elp6	2610001P13Rik|2610002I17Rik|AV159994|Tmem103	elongator acetyltransferase complex subunit 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-27018603-4	chr8	27018072	27019072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR42-int|LTR|ERVK	-5227.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-56901999-4	chr6	56901513	56902513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252374)	promoter-TSS (NM_001252374)	-127.0	NM_001252374	107569.0	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|P5'N-1|P5N-1|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-114781674-7	chr9	114781180	114782180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133978, exon 1 of 5)	exon (NM_133978, exon 1 of 5)	313.0	NM_133978	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	182.5	510.5	429.0	127.5	361.0	305.0
Merged-chr5-149229152-4	chr5	149228654	149229654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-35850.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40722398-4	chr4	40721900	40722900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029594)	promoter-TSS (NR_029594)	-68.0	NM_008298	15502.0	Mm.27897	NM_008298	ENSMUSG00000028410	Dnaja1	HSJ-2|Hsj2|Nedd7	DnaJ heat shock protein family (Hsp40) member A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76576509-5	chr15	76576019	76577019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172960, intron 1 of 14)	CpG	160.0	NR_073123	268822.0	Mm.181624	NM_172960	ENSMUSG00000022550	Adck5	A230108P17	aarF domain containing kinase 5	protein-coding	0.5	4.0	8.0	1.0	9.5	1.0
Merged-chr13-112760703-4	chr13	112760199	112761199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40078.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	10.0	59.5	20.0	37.0	112.5	72.5
Merged-chr1-128020543-4	chr1	128020024	128021024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 6 of 20)	L1ME1|LINE|L1	81947.0	NM_027678	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20696947-1	chr18	20696447	20697447	+	1000.0	f0_c57.idr	intron (NM_019737, intron 5 of 8)	intron (NM_019737, intron 5 of 8)	-31687.0	NR_155534	102633478.0		NR_155534	ENSMUSG00000085595	Gm16090	-	predicted gene 16090	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36750585-4	chr5	36750076	36751076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1897.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127339047-4	chr10	127338633	127339633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010296, intron 2 of 12)	intron (NM_010296, intron 2 of 12)	2446.0	NM_010296	14632.0	Mm.391450	NM_010296	ENSMUSG00000025407	Gli1	AV235269|Zfp-5|Zfp5	GLI-Kruppel family member GLI1	protein-coding	5.5	3.0	1.5	1.5	3.5	1.5
Merged-chr1-106628438-4	chr1	106627927	106628927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009741, intron 1 of 1)	RCHARR1|DNA|hAT-Charlie	-81796.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127800552-4	chr7	127800033	127801033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133943)	promoter-TSS (NM_133943)	-76.0	NM_133943	101502.0	Mm.157103	NM_133943	ENSMUSG00000042289	Hsd3b7	AI195443|BB098564	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding	0.0	0.0	1.0	2.5	0.5	0.5
Merged-chr4-84884367-4	chr4	84883868	84884868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177385)	promoter-TSS (NM_177385)	59.0	NM_177385	338349.0	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	6.0	5.5	1.0	9.0	5.0	6.0
Merged-chr8-86745652-4	chr8	86745129	86746129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027829)	promoter-TSS (NR_027829)	-70.0	NR_027829	666945.0	Mm.391806	NR_027829		Gm10638	-	predicted gene 10638	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154570019-4	chr2	154569505	154570505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291105)	promoter-TSS (NM_001291105)	-113.0	NM_007891	13555.0	Mm.18036	NM_007891	ENSMUSG00000027490	E2f1	E2F-1|Tg(Wnt1-cre)2Sor|mKIAA4009	E2F transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111035353-4	chr12	111034861	111035861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4437.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24804317-4	chr17	24803824	24804824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029197)	promoter-TSS (NM_029197)	-58.0	NM_029197	75178.0	Mm.52592	NM_029197	ENSMUSG00000024155	Meiob	4930528F23Rik|MLZ-675	meiosis specific with OB domains	protein-coding	9.0	22.5	27.5	35.5	33.5	20.5
Merged-chr1-107589978-4	chr1	107589491	107590491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011459)	promoter-TSS (NM_011459)	-15.0	NM_011459	20725.0	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84688511-4	chr18	84688020	84689020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2818.0	NM_023149	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-88824731-4	chr18	88824230	88825230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	69477.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5388737-4	chr19	5388209	5389209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016882)	promoter-TSS (NM_016882)	-6.0	NM_016882	20227.0	Mm.34562	NM_016882	ENSMUSG00000039148	Sart1	U5-110K	squamous cell carcinoma antigen recognized by T cells 1	protein-coding	13.5	59.0	53.0	25.0	44.5	37.0
Merged-chr17-64602104-6	chr17	64601514	64602514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	CpG-6542	365.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5261762-4	chr11	5261262	5262262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_032396)	promoter-TSS (NM_032396)	-152.0	NM_032396	84035.0	Mm.209989	NM_032396	ENSMUSG00000020393	Kremen1	AV002070|Kremen|Krm1	kringle containing transmembrane protein 1	protein-coding	5.0	7.5	5.5	5.0	0.5	2.0
Merged-chr13-52600480-4	chr13	52599979	52600979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 1 of 13)	intron (NM_011518, intron 1 of 13)	3597.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25693445-2	chr14	25692945	25693945	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134084)	promoter-TSS (NM_134084)	-725.0	NM_134084	105675.0	Mm.41656	NM_134084	ENSMUSG00000021868	Ppif	AW457192|CyP-D|CyP-F|CypD|PPIase	peptidylprolyl isomerase F (cyclophilin F)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180826901-6	chr1	180826415	180827415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-13310.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115483971-2	chr11	115483471	115484471	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001361594)	TTS (NM_001361594)	-7558.0	NR_136931	102634812.0	Mm.390379	NR_136931		LOC102634812	-	ribosomal protein L39 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101687943-4	chr11	101687430	101688430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22389.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27446833-4	chr7	27446299	27447299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_032610)	promoter-TSS (NM_032610)	-210.0	NM_032610	80297.0	Mm.459123	NM_032610	ENSMUSG00000011751	Sptbn4	1700022P15Rik|5830426A08Rik|ROSA62|SpbIV|Spnb4|dyn|lnd|nmf261|nmf379|qv	spectrin beta, non-erythrocytic 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-117566540-4	chr12	117566094	117567094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 3 of 27)	intron (NM_175930, intron 3 of 27)	50115.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	0.0	7.5	9.0	18.5	2.0	11.0
Merged-chr1-52232438-4	chr1	52231945	52232945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081081, intron 1 of 17)	CpG	787.0	NM_001081081	14660.0	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-75559581-4	chr9	75559037	75560037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_016963, exon 1 of 10)	5' UTR (NM_016963, exon 1 of 10)	120.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167368623-4	chr2	167368108	167369108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19430.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134077856-4	chr1	134077340	134078340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007570, intron 1 of 1)	intron (NM_007570, intron 1 of 1)	1315.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-48459098-4	chr14	48458592	48459592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310584, intron 4 of 16)	intron (NM_001310584, intron 4 of 16)	12740.0	NR_132324	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	81.5	301.0	219.0	79.0	330.5	200.5
Merged-chr4-6415420-4	chr4	6414898	6415898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 21 of 30)	intron (NM_010945, intron 21 of 30)	38873.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23424706-4	chr13	23424226	23425226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013924)	promoter-TSS (NM_013924)	-860.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89174056-4	chr15	89173548	89174548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159521)	promoter-TSS (NM_001159521)	-97.0	NM_001159521	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23546493-4	chr17	23545958	23546958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4341.0	NR_126485	320020.0	Mm.445111	NR_126484		6330415G19Rik	-	RIKEN cDNA 6330415G19 gene	ncRNA	7.0	14.5	18.0	10.0	42.5	26.5
Merged-chr6-31216749-4	chr6	31216254	31217254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	CpG	1720.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99169982-4	chr10	99169486	99170486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	61851.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-28319813-4	chr6	28319304	28320304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58203.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121292057-4	chr3	121291544	121292544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155539, intron 1 of 2)	CpG	304.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	44.0	128.0	88.0	58.0	69.0	78.0
Merged-chr6-72037742-4	chr6	72037212	72038212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046180, intron 1 of 2)	intron (NR_046180, intron 1 of 2)	4816.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16326400-4	chr7	16325901	16326901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019748)	TTS (NM_019748)	16818.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0.0	22.0	5.0	0.0	6.5	1.5
Merged-chr4-151996622-1	chr4	151996122	151997122	+	1000.0	f0_c57.idr	promoter-TSS (NM_172705)	promoter-TSS (NM_172705)	-443.0	NM_172705	230936.0	Mm.25582	NM_172705	ENSMUSG00000047777	Phf13	BC029632|Phf5|SPOC1	PHD finger protein 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130144747-4	chr5	130144219	130145219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172509)	promoter-TSS (NM_172509)	-169.0	NM_172509	212919.0	Mm.55812	NM_172509	ENSMUSG00000034110	Kctd7	4932409E18|9430010P06Rik	potassium channel tetramerisation domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-18999567-2	chr10	18999067	19000067	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12396.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-66701288-2	chr1	66700788	66701788	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025683, intron 1 of 5)	CpG	457.0	NM_001310644	66646.0	Mm.240912	NM_025683	ENSMUSG00000026005	Rpe	2810429B02Rik|5730518J08Rik	ribulose-5-phosphate-3-epimerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38461877-2	chr16	38461377	38462377	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359898, intron 1 of 5)	L1MC1|LINE|L1	2944.0	NM_009855	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84790824-4	chr17	84790284	84791284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028233)	promoter-TSS (NM_028233)	2.0	NM_028233	72416.0	Mm.217027	NM_028233	ENSMUSG00000024120	Lrpprc	3110001K13Rik|C76645|Gp130|Lrp130|Lsfc	leucine-rich PPR-motif containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-42265619-4	chr6	42265108	42266108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007610, intron 1 of 10)	intron (NM_007610, intron 1 of 10)	623.0	NM_007610	12366.0	Mm.3921	NM_007610	ENSMUSG00000029863	Casp2	CASP-2|ICH-1|NEDD-2|Nedd2	caspase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69063011-4	chr11	69062399	69063399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3124.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-113820269-4	chr2	113819799	113820799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009162, intron 2 of 5)	intron (NM_009162, intron 2 of 5)	8792.0	NM_009162	20394.0	Mm.4836	NM_009162	ENSMUSG00000023236	Scg5	7B2|AI325031|Sgne-1|Sgne1	secretogranin V	protein-coding	7.5	19.0	20.0	20.5	15.5	33.0
Merged-chr5-8944083-4	chr5	8943567	8944567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008830, intron 21 of 27)	MIR|SINE|MIR	50346.0	NM_008830	18670.0	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-44176553-3	chr12	44176067	44177067	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33501.0	NM_013760	27362.0	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	3.5	14.5	3.5	1.0	9.0	2.5
Merged-chr16-16870781-4	chr16	16870251	16871251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011624)	promoter-TSS (NM_011624)	15.0	NM_011624	21976.0	Mm.326089	NM_011624	ENSMUSG00000022779	Top3b	-	topoisomerase (DNA) III beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-21129753-2	chr18	21129253	21130253	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033445, exon 6 of 6)	exon (NM_001033445, exon 6 of 6)	57409.0	NM_008586	17288.0	Mm.2682	NM_008586	ENSMUSG00000024313	Mep1b	Mep-1b	meprin 1 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83326138-4	chr6	83325701	83326701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145571, exon 1 of 6)	5' UTR (NM_145571, exon 1 of 6)	162.0	NM_145571	232157.0	Mm.29500	NM_145571	ENSMUSG00000043131	Mob1a	4022402H07Rik|MOB1|MOB4B|Mobk1b|Mobkl1b	MOB kinase activator 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80016584-4	chr10	80016064	80017064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142701)	promoter-TSS (NM_001142701)	-108.0	NM_001142701	70719.0	Mm.243954	NM_027521	ENSMUSG00000035697	Arhgap45	6330406L22Rik|AW539505|Ha-1|Hmha1	Rho GTPase activating protein 45	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54251722-2	chr11	54251222	54252222	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1823.0	NM_009969	12981.0	Mm.4922	NM_009969	ENSMUSG00000018916	Csf2	CSF|Csfgm|GMCSF|Gm-CSf|MGI-IGM	colony stimulating factor 2 (granulocyte-macrophage)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117070051-2	chr11	117069551	117070551	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-6732.0	NR_027059	76972.0	Mm.309167	NR_027059	ENSMUSG00000086859	Snhg20	2810008D09Rik	small nucleolar RNA host gene 20	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141547134-4	chr4	141546643	141547643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030695, exon 1 of 1)	non-coding (NR_030695, exon 1 of 1)	981.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	202.5	415.0	338.5	96.0	331.0	196.0
Merged-chr15-81190287-1	chr15	81189787	81190787	+	1000.0	f1_balb.idr	promoter-TSS (NR_015603)	promoter-TSS (NR_015603)	470.0	NM_001082536	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	14.0	18.0	10.5	0.0	2.5	0.0
Merged-chr1-74397477-4	chr1	74396983	74397983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153088)	TTS (NM_153088)	3173.0	NR_029743	387219.0		NR_029743	ENSMUSG00000065468	Mir26b	Mirn26b|mir-26b|mmu-mir-26b	microRNA 26b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143990277-4	chr5	143989765	143990765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177682, intron 14 of 14)	intron (NM_177682, intron 14 of 14)	24588.0	NM_177682	231874.0	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19143321-2	chr7	19142821	19143821	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026111, intron 5 of 6)	intron (NM_026111, intron 5 of 6)	5875.0	NM_026111	67369.0	Mm.234876	NM_026111	ENSMUSG00000030407	Qpctl	1810019P04Rik|BB101812|gQC	glutaminyl-peptide cyclotransferase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117963554-4	chr11	117963072	117964072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	5794.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-13128251-2	chr1	13127751	13128751	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1088.0	NM_001081209	383491.0	Mm.309380	NM_001081209	ENSMUSG00000042414	Prdm14	-	PR domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136245400-4	chr5	136244898	136245898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302939)	promoter-TSS (NM_001302939)	-458.0	NM_018825	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-41707772-4	chr5	41707264	41708264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310592)	promoter-TSS (NM_001310592)	-73.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	59.0	86.0	86.5	41.0	87.0	65.0
Merged-chr4-45408788-4	chr4	45408282	45409282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001009949)	promoter-TSS (NM_001009949)	-16.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	268.0	632.5	561.0	140.5	313.0	274.0
Merged-chr15-39611105-4	chr15	39610603	39611603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053271, intron 21 of 26)	intron (NM_053271, intron 21 of 26)	-48408.0	NM_001256384	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69145433-3	chr12	69144960	69145960	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	13726.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	12.5	14.5	17.0	19.0	25.5	23.5
Merged-chr15-36578703-4	chr15	36578213	36579213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23140.0	NM_025712	66696.0	Mm.253627	NM_025712	ENSMUSG00000013611	Snx31	4631426E05Rik	sorting nexin 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191317958-4	chr1	191317468	191318468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025424, exon 1 of 4)	exon (NM_025424, exon 1 of 4)	150.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	16.5	26.0	50.0	15.0	23.0	34.5
Merged-chr7-25477688-4	chr7	25477214	25478214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039187)	promoter-TSS (NM_001039187)	-89.0	NM_001039187	26365.0	Mm.322502	NM_011926	ENSMUSG00000074272	Ceacam1	Bgp|Bgp1|C-CAM|CD66a|Cc1|Cea-1|Cea-7|Cea1|Cea7|Hv-2|Hv2|MHVR|MHVR1|Mhv-1|bb-1|mCEA1|mmCGM1|mmCGM1a|mmCGM2	carcinoembryonic antigen-related cell adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94532999-4	chr8	94532521	94533521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153507)	promoter-TSS (NM_153507)	-7.0	NM_153507	234577.0	Mm.291815	NM_153507	ENSMUSG00000034361	Cpne2	3322401K10Rik	copine II	protein-coding	0.0	0.5	7.5	3.0	6.0	0.5
Merged-chr17-24463979-4	chr17	24463492	24464492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6481.0	NM_025954	67078.0	Mm.28541	NM_025954	ENSMUSG00000043445	Pgp	1700012G19Rik|AI481330|AUM|G3PP	phosphoglycolate phosphatase	protein-coding	33.0	32.0	22.0	27.5	29.5	17.0
Merged-chr2-153784834-4	chr2	153784337	153785337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036629, intron 3 of 7)	intron (NR_036629, intron 3 of 7)	3958.0	NR_036629	100504221.0	Mm.246778	NM_177849	ENSMUSG00000044083	Efcab8	A630008I04|EG329541	EF-hand calcium binding domain 8	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-118994424-4	chr12	118993967	118994967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28046.0	NM_029961	77706.0	Mm.261496	NM_029961	ENSMUSG00000072791	Abcb5	9230106F14Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118602045-4	chr2	118601542	118602542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009773, intron 2 of 22)	intron (NM_009773, intron 2 of 22)	3831.0	NM_009773	12236.0	Mm.29133	NM_009773	ENSMUSG00000040084	Bub1b	AU045529|BUBR1	BUB1B, mitotic checkpoint serine/threonine kinase	protein-coding	23.0	47.5	40.0	7.5	22.5	32.5
Merged-chr4-134287327-4	chr4	134286823	134287823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163794)	promoter-TSS (NM_001163794)	-70.0	NM_001163794	230809.0	Mm.22778	NM_146156	ENSMUSG00000050890	Pdik1l	BC027088|stk35l2	PDLIM1 interacting kinase 1 like	protein-coding	6.5	45.5	21.0	7.0	15.5	19.5
Merged-chr15-100615319-4	chr15	100614830	100615830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011873)	promoter-TSS (NM_011873)	-220.0	NR_045701	78445.0	Mm.44383	NR_045701	ENSMUSG00000097093	C330013E15Rik	-	RIKEN cDNA C330013E15 gene	ncRNA	157.5	524.5	379.5	165.5	406.5	340.0
Merged-chr8-119838535-4	chr8	119838044	119839044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	ID_B1|SINE|B4	2035.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96637532-2	chr15	96637032	96638032	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166458, intron 1 of 15)	intron (NM_001166458, intron 1 of 15)	4430.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116435269-2	chr11	116434769	116435769	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176902, intron 2 of 2)	intron (NM_176902, intron 2 of 2)	1056.0	NR_003376	664849.0	Mm.258466	NR_003376		Gm7367	EG664849	1110014K08Rik pseudogene	pseudo	17.5	19.0	11.5	26.0	14.0	12.0
Merged-chr13-12121937-4	chr13	12121431	12122431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-14986.0	NM_023868	20191.0	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115718436-4	chr6	115717933	115718933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40566.0	NM_144805	94346.0	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-93267154-4	chr5	93266628	93267628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007635)	promoter-TSS (NM_007635)	-445.0	NM_007635	12452.0	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	26.5	83.0	35.0	26.5	88.0	37.0
Merged-chr2-27563936-4	chr2	27563442	27564442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48795.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-14063572-4	chr13	14063073	14064073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331176)	promoter-TSS (NM_001331176)	-85.0	NM_010282	14593.0	Mm.148039	NM_010282	ENSMUSG00000021302	Ggps1	1810026C22Rik|9530089B04Rik|AI843169|C79210	geranylgeranyl diphosphate synthase 1	protein-coding	20.0	47.5	53.5	6.0	28.5	12.0
Merged-chr7-127895667-4	chr7	127895165	127896165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178600)	promoter-TSS (NM_178600)	-48.0	NM_178600	27973.0	Mm.29703	NM_178600	ENSMUSG00000096145	Vkorc1	D7Wsu86e	vitamin K epoxide reductase complex, subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83883853-4	chr7	83883380	83884380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_030705, exon 1 of 1)	5' UTR (NM_030705, exon 1 of 1)	461.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	46.5	98.5	117.5	22.5	38.5	33.0
Merged-chr9-75549202-3	chr9	75548693	75549693	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357828, intron 1 of 10)	intron (NM_001357828, intron 1 of 10)	10464.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	27.5	33.0	40.0	13.5	27.0	13.5
Merged-chr14-101653792-4	chr14	101653330	101654330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016723)	promoter-TSS (NM_016723)	-137.0	NM_016723	50933.0	Mm.275970	NM_016723	ENSMUSG00000022111	Uchl3	-	ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53519829-4	chr11	53519332	53520332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252332)	promoter-TSS (NM_001252332)	96.0	NM_001347496	20362.0	Mm.274399	NM_033144	ENSMUSG00000018398	Sept8	AW046166|Sepl	septin 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86191629-4	chr15	86191123	86192123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-5482.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130664324-4	chr2	130663924	130664924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029832, intron 1 of 8)	CpG	221.0	NM_029832	77006.0	Mm.440063	NM_029832	ENSMUSG00000068290	Ddrgk1	1110001I20Rik|2600009E05Rik|AI326138|Ufbp1	DDRGK domain containing 1	protein-coding	65.0	156.0	81.5	48.5	153.5	140.0
Merged-chr5-142904414-2	chr5	142903914	142904914	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007393, exon 4 of 6)	exon (NM_007393, exon 4 of 6)	2340.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-34580090-4	chr15	34579558	34580558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145469, intron 8 of 10)	intron (NM_145469, intron 8 of 10)	84747.0	NM_152894	67724.0	Mm.248779	NM_026340	ENSMUSG00000022325	Pop1	4932434G09Rik	processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	11.5	4.0	6.5	15.5	10.0	7.0
Merged-chr11-117109834-4	chr11	117109337	117110337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5335.0	NR_029459	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77774038-4	chr18	77773539	77774539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357532)	promoter-TSS (NM_001357532)	-154.0	NM_001357531	225745.0	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134955991-4	chr1	134955477	134956477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081307)	promoter-TSS (NM_001081307)	-37.0	NM_001081307	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99398636-3	chr15	99398174	99399174	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171036, intron 2 of 10)	intron (NM_001171036, intron 2 of 10)	5455.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	2.5	14.5	19.5	4.0	18.5	8.0
Merged-chr4-88864758-4	chr4	88864239	88865239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14652.0	NM_010502	15962.0	Mm.57127	NM_010502	ENSMUSG00000095498	Ifna1	Ifa1	interferon alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12224097-4	chr18	12223605	12224605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008720, intron 1 of 24)	intron (NM_008720, intron 1 of 24)	12281.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	43.5	219.0	151.0	100.0	251.0	172.5
Merged-chr19-10979961-4	chr19	10979455	10980455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034898, intron 6 of 6)	intron (NM_001034898, intron 6 of 6)	-5285.0	NM_023529	69826.0	Mm.273404	NM_023529	ENSMUSG00000024731	Ms4a10	2010001N17Rik	membrane-spanning 4-domains, subfamily A, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127912468-4	chr7	127911970	127912970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026370)	promoter-TSS (NM_026370)	-47.0	NM_026370	67773.0	Mm.425492	NM_026370	ENSMUSG00000030801	Kat8	2010203C02Rik|5830450F21Rik|D7Ertd629e|MOF|MYST-1|Myst1	K(lysine) acetyltransferase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22331119-4	chr16	22330618	22331618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36130.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127602751-4	chr10	127602253	127603253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	18395.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	53.0	129.0	61.5	53.5	122.0	62.5
Merged-chr7-80846111-4	chr7	80845624	80846624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15984.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31001601-4	chr14	31001084	31002084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026911)	promoter-TSS (NM_026911)	82.0	NM_026911	69019.0	Mm.28852	NM_026911	ENSMUSG00000021917	Spcs1	1810004F21Rik	signal peptidase complex subunit 1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71405984-4	chr8	71405474	71406474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172756)	promoter-TSS (NM_172756)	-38.0	NM_001310502	234396.0	Mm.216549	NM_172756	ENSMUSG00000046295	Ankle1	8430438L13Rik|Ankrd41|C430003I23|Lem3	ankyrin repeat and LEM domain containing 1	protein-coding	15.5	27.0	25.5	9.5	53.0	21.0
Merged-chr10-95195964-4	chr10	95195464	95196464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	ORR1E|LTR|ERVL-MaLR	-50139.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180888436-2	chr1	180887936	180888936	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4672.0	NM_177099	320202.0	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46554870-4	chr4	46554377	46555377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 2 of 11)	intron (NM_001164804, intron 2 of 11)	11563.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	46.0	114.0	92.0	76.0	155.5	95.5
Merged-chr16-17012799-4	chr16	17012311	17013311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038663, intron 1 of 7)	intron (NM_001038663, intron 1 of 7)	29429.0	NM_001038663	26413.0	Mm.196581	NM_011949	ENSMUSG00000063358	Mapk1	9030612K14Rik|AA407128|AU018647|C78273|ERK|Erk2|MAPK2|PRKM2|Prkm1|p41mapk|p42mapk	mitogen-activated protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128619203-4	chr4	128618705	128619705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_205823)	promoter-TSS (NM_205823)	-586.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136518707-4	chr6	136518204	136519204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019426)	promoter-TSS (NM_019426)	-147.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	90.0	191.5	154.5	92.5	202.5	113.0
Merged-chr1-119526349-4	chr1	119525840	119526840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_146103, exon 1 of 1)	5' UTR (NM_146103, exon 1 of 1)	186.0	NM_146103	226351.0	Mm.439806	NM_146103	ENSMUSG00000098923	Tmem185b	2500001K11Rik	transmembrane protein 185B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-115839166-4	chr4	115838683	115839683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021461)	promoter-TSS (NM_021461)	-15.0	NM_001285488	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	35.0	66.5	50.5	25.5	40.5	40.0
Merged-chr11-6274956-4	chr11	6274468	6275468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134020)	promoter-TSS (NM_134020)	-131.0	NM_134020	103694.0	Mm.254495	NM_134020	ENSMUSG00000004394	Tmed4	1110014L17Rik|AI326346	transmembrane p24 trafficking protein 4	protein-coding	10.5	15.0	19.5	6.0	13.0	12.0
Merged-chr8-74993684-4	chr8	74993205	74994205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316753)	promoter-TSS (NM_001316753)	55.0	NM_178017	70823.0	Mm.261739	NM_178017	ENSMUSG00000034518	Hmgxb4	4733401K04Rik|AI316803|Hmgb2l1	HMG box domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152735189-4	chr2	152734696	152735696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1055.0	NM_010495	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	4.5	3.5	1.5	2.0	3.0	0.0
Merged-chr10-78367172-4	chr10	78366656	78367656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-15456.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148551893-4	chr5	148551365	148552365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359201)	promoter-TSS (NM_001359201)	20.0	NM_001359200	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-15156926-4	chr3	15156410	15157410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	175392.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122802812-2	chr6	122802312	122803312	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21B|LTR|ERV1	-17372.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-58323327-4	chr14	58322817	58323817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	250631.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11346377-4	chr16	11345864	11346864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 1 of 20)	intron (NM_028964, intron 1 of 20)	23460.0	NM_028964	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-41499881-2	chr7	41499381	41500381	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033530)	promoter-TSS (NM_001033530)	9.0	NM_001033530	101835.0	Mm.370336	NM_001033530	ENSMUSG00000074166	AW146154	AI451288	expressed sequence AW146154	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27354429-1	chr14	27353929	27354929	+	1000.0	f1_balb.idr	intron (NM_001289687, intron 1 of 9)	MLT1B|LTR|ERVL-MaLR	-6960.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	12.0	13.0	17.5	0.5	6.0	9.0
Merged-chr2-6479779-2	chr2	6479279	6480279	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	127043.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59438094-4	chr2	59437606	59438606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46547.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120938970-4	chr11	120938444	120939444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6072.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	0.0	2.0	0.0	0.0	2.0	0.0
Merged-chr7-24389645-4	chr7	24389131	24390131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9997.0	NM_028047	71997.0	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	84.5	137.0	120.5	32.5	50.5	54.0
Merged-chr5-18014390-4	chr5	18013879	18014879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 5 of 7)	intron (NM_001081143, intron 5 of 7)	51809.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113795243-4	chr13	113794709	113795709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	701.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75017517-4	chr14	75016986	75017986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198642, intron 1 of 13)	intron (NM_198642, intron 1 of 13)	1459.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65031600-4	chr9	65031089	65032089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028906)	promoter-TSS (NM_028906)	-869.0	NM_028906	74388.0	Mm.202749	NM_028906	ENSMUSG00000032393	Dpp8	2310004I03Rik|4932434F09Rik|AI666706|DPP VIII	dipeptidylpeptidase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36627036-4	chr16	36626543	36627543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 2 of 7)	intron (NM_019388, intron 2 of 7)	39034.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107709950-4	chr9	107709440	107710440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011349, intron 1 of 17)	CpG	535.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-8862483-4	chr16	8861974	8862974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32374.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85192854-4	chr12	85192361	85193361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15548.0	NM_008827	18654.0	Mm.4809	NM_008827	ENSMUSG00000004791	Pgf	AI854365|PIGF|Plgf	placental growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18048209-2	chr16	18047709	18048709	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4651.0	NM_010047	13353.0	Mm.27155	NM_010047	ENSMUSG00000003531	Dgcr6	-	DiGeorge syndrome critical region gene 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128374125-4	chr2	128373700	128374700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	55151.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	133.5	434.0	304.0	219.5	454.0	321.0
Merged-chr9-113719283-2	chr9	113718783	113719783	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11024.0	NM_011052	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr7-19320149-4	chr7	19319639	19320639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-10094.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140617956-4	chr5	140617436	140618436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10595.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77352922-2	chr10	77352422	77353422	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024838, intron 2 of 11)	intron (NM_001024838, intron 2 of 11)	65351.0	NM_130895	110532.0	Mm.276815	NM_130895	ENSMUSG00000020262	Adarb1	1700057H01Rik|AW124433|AW558573|Adar2|BB220382|D10Bwg0447e|Red1	adenosine deaminase, RNA-specific, B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-121333157-4	chr7	121332642	121333642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-59154.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67249185-4	chr18	67248681	67249681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-3351.0	NM_001357518	225651.0	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	Pgap5	metallophosphoesterase 1	protein-coding	55.5	50.5	50.5	40.0	64.0	62.5
Merged-chr1-39367837-4	chr1	39367380	39368380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252218)	promoter-TSS (NM_001252218)	29.0	NM_001252218	114641.0	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4554958-4	chr2	4554447	4555447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 11 of 23)	(TTTTTG)n|Simple_repeat|Simple_repeat	-4807.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102245300-4	chr11	102244783	102245783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3599.0	NM_153544	217216.0	Mm.247335	NM_153544	ENSMUSG00000034773	BC030867	-	cDNA sequence BC030867	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-31445930-4	chr10	31445408	31446408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009413)	promoter-TSS (NM_009413)	50.0	NM_001359365	21987.0	Mm.439966	NM_009413	ENSMUSG00000000296	Tpd52l1	D53	tumor protein D52-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25582588-4	chr2	25582076	25583076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001024616)	TTS (NM_001024616)	-2477.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-26437775-4	chr14	26437274	26438274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 16 of 22)	intron (NM_001310445, intron 16 of 22)	80227.0	NR_038005	71106.0	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-77443298-4	chr8	77442832	77443832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 3 of 22)	intron (NM_030113, intron 3 of 22)	-73724.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66684941-4	chr15	66684449	66685449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 10 of 47)	MTD|LTR|ERVL-MaLR	14179.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	11.0	45.0	27.0	8.5	50.0	24.5
Merged-chr19-32223926-4	chr19	32223429	32224429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 4 of 9)	intron (NM_144792, intron 4 of 9)	-12916.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-93499655-4	chr13	93499153	93500153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021310, exon 1 of 11)	5' UTR (NM_021310, exon 1 of 11)	155.0	NM_021310	57748.0	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-70257323-4	chr10	70256805	70257805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025807, intron 2 of 5)	intron (NM_025807, intron 2 of 5)	12029.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99461795-4	chr10	99461304	99462304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147367.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103133079-4	chr11	103132574	103133574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027658)	promoter-TSS (NM_027658)	-265.0	NM_001130516	71059.0	Mm.273871	NM_027658	ENSMUSG00000043372	Hexim2	4933402L21Rik	hexamethylene bis-acetamide inducible 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116669280-4	chr6	116668762	116669762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178045, intron 1 of 10)	MLTR14|LTR|ERV1	4574.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134068621-4	chr6	134068116	134069116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	32916.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	12.5	39.5	25.0	23.5	35.5	23.0
Merged-chr4-140964846-4	chr4	140964350	140965350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355515, intron 1 of 7)	B4A|SINE|B4	3579.0	NM_023374	67680.0	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60537311-1	chr11	60536811	60537811	+	1000.0	f0_c57.idr	promoter-TSS (NM_172943)	promoter-TSS (NM_172943)	-372.0	NM_172943	268420.0	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115189518-4	chr11	115189014	115190014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033393, intron 2 of 9)	intron (NM_001033393, intron 2 of 9)	2027.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	486.0	1178.0	832.5	385.0	953.5	691.0
Merged-chr2-28540128-4	chr2	28539620	28540620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145836, intron 1 of 17)	intron (NM_001145836, intron 1 of 17)	6656.0	NM_001145836	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-53460265-4	chr3	53459767	53460767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172501, intron 3 of 6)	intron (NM_172501, intron 3 of 6)	2991.0	NM_172501	212114.0	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81641933-2	chr10	81641433	81642433	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027480, intron 14 of 19)	intron (NM_027480, intron 14 of 19)	-7136.0	NM_001142963	100233208.0	Mm.327168	NM_001142963	ENSMUSG00000096856	Gm10778	-	predicted gene 10778	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-24503009-1	chr9	24502509	24503509	+	1000.0	f0_balb.idr	exon (NM_172920, exon 1 of 22)	exon (NM_172920, exon 1 of 22)	131.0	NM_001359948	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165332818-4	chr2	165332310	165333310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6331.0	NM_207706	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87213901-4	chr1	87213400	87214400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347083)	promoter-TSS (NM_001347083)	-11.0	NM_001347083	26987.0	Mm.227183	NM_023314	ENSMUSG00000026254	Eif4e2	2700069E09Rik|AI036339|AV129531|D0H0S6743E|Eif4el3	eukaryotic translation initiation factor 4E member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55507279-4	chr1	55506801	55507801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	101355.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	77.5	194.0	124.0	90.0	182.0	114.0
Merged-chr15-80813050-4	chr15	80812555	80813555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177124, intron 1 of 21)	intron (NM_177124, intron 1 of 21)	14445.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	1.0	1.5	0.0	0.0	2.0	1.5
Merged-chr2-163602882-4	chr2	163602370	163603370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131225, intron 1 of 3)	intron (NR_131225, intron 1 of 3)	556.0	NR_131225	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36793687-4	chr15	36793173	36794173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011740, exon 2 of 7)	5' UTR (NM_011740, exon 2 of 7)	865.0	NM_011740	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36562401-2	chr5	36561905	36562905	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	19992.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	22.5	89.0	53.5	53.5	62.0	89.5
Merged-chr11-61505084-4	chr11	61504591	61505591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013717)	promoter-TSS (NM_013717)	-53.0	NM_013717	27078.0	Mm.261226	NM_013717	ENSMUSG00000001039	B9d1	AW045994|B9|Eppb9	B9 protein domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114675446-4	chr11	114674937	114675937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053273)	promoter-TSS (NM_053273)	-31.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-14640728-4	chr14	14640221	14641221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62304.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-92354880-8	chr13	92354362	92355362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010049)	promoter-TSS (NM_010049)	79.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-105685345-4	chr12	105684845	105685845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178613)	promoter-TSS (NM_178613)	-7.0	NM_178613	66787.0	Mm.248019	NM_178613	ENSMUSG00000044715	Gskip	4933433P14Rik	GSK3B interacting protein	protein-coding	9.0	26.5	36.0	18.0	26.5	25.0
Merged-chr8-125568503-4	chr8	125568007	125569007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	1356.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	57.0	164.5	107.5	62.0	138.0	89.0
Merged-chr10-80126946-2	chr10	80126446	80127446	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301853, intron 6 of 8)	intron (NM_001301853, intron 6 of 8)	10441.0	NM_001195268	100503659.0	Mm.485395	NM_015761	ENSMUSG00000035640	Cbarp	9630008F14|Dos|R29144/1	calcium channel, voltage-dependent, beta subunit associated regulatory protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118176407-2	chr11	118175907	118176907	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 10 of 12)	intron (NM_001112700, intron 10 of 12)	36335.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56256056-4	chr17	56255511	56256511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010192)	promoter-TSS (NM_010192)	-782.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182908573-4	chr1	182908081	182909081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46207.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43788212-2	chr5	43787712	43788712	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6063.0	NM_178729	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	6.5	0.0	1.0	1.0	9.5	1.5
Merged-chr2-26352127-4	chr2	26351620	26352620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001139504)	promoter-TSS (NM_001139504)	-10.0	NM_001139504	52838.0	Mm.31239	NM_026828	ENSMUSG00000075467	Dnlz	1110034G11Rik|D2Bwg1335e|HEP1	DNL-type zinc finger	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91871883-2	chr16	91871383	91872383	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001110275)	TTS (NM_001110275)	59747.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-44048757-1	chr5	44048257	44049257	+	1000.0	f1_balb.idr	intron (NM_001163578, intron 3 of 22)	intron (NM_001163578, intron 3 of 22)	46011.0	NM_001163581	19126.0	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	0.0	4.0	0.0	4.5	0.0	0.0
Merged-chr11-8589699-4	chr11	8589194	8590194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 3 of 30)	intron (NM_001083587, intron 3 of 30)	74841.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	30.0	78.0	52.0	32.5	83.0	46.5
Merged-chr15-95887578-4	chr15	95887066	95888066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 2 of 19)	intron (NM_175344, intron 2 of 19)	-57494.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-114640147-4	chr9	114639621	114640621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153585)	promoter-TSS (NM_153585)	79.0	NM_153585	78893.0	Mm.283708	NM_153585	ENSMUSG00000056167	Cnot10	2600001P13Rik	CCR4-NOT transcription complex, subunit 10	protein-coding	17.5	50.5	47.5	26.0	61.0	54.5
Merged-chr6-128135220-4	chr6	128134700	128135700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175414, intron 1 of 8)	intron (NM_175414, intron 1 of 8)	8378.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157279062-4	chr2	157278561	157279561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019642)	promoter-TSS (NM_019642)	-37.0	NM_001355163	20014.0	Mm.22130	NM_019642	ENSMUSG00000027642	Rpn2	1300012C06Rik|AV261018|Rpn-2	ribophorin II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91086538-4	chr2	91086048	91087048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10130.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	186.0	284.5	214.0	87.0	284.0	190.5
Merged-chr7-49396318-4	chr7	49395811	49396811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 3 of 37)	intron (NM_175272, intron 3 of 37)	150122.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-97718645-4	chr1	97718173	97719173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173760, intron 25 of 27)	intron (NM_173760, intron 25 of 27)	51419.0	NM_173760	227399.0	Mm.220817	NM_173760	ENSMUSG00000040648	Ppip5k2	AW555814|Cfap160|D330021B20|Hisppd1|Vip2|mKIAA0433	diphosphoinositol pentakisphosphate kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23675015-1	chr17	23674515	23675515	+	1000.0	f1_balb.idr	TTS (NM_013749)	TTS (NM_013749)	-1138.0	NM_001357380	386612.0	Mm.328831	NM_001008425	ENSMUSG00000041319	Thoc6	F830014G06Rik|Wdr58	THO complex 6	protein-coding	9.5	9.5	6.5	0.5	10.5	5.0
Merged-chr10-80320572-4	chr10	80320086	80321086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025521)	promoter-TSS (NM_025521)	-38.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100860373-4	chr11	100859845	100860845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164062)	promoter-TSS (NM_001164062)	-139.0	NM_001164062	20850.0	Mm.277403	NM_011488	ENSMUSG00000004043	Stat5a	AA959963|STAT5	signal transducer and activator of transcription 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89281794-2	chr3	89281294	89282294	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162425)	promoter-TSS (NM_001162425)	-843.0	NM_001162425	13636.0	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108532176-4	chr6	108531685	108532685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 60 of 61)	intron (NM_010585, intron 60 of 61)	42442.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	9.5	67.0	45.0	25.0	87.5	56.0
Merged-chr1-130462608-4	chr1	130462122	130463122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010016, exon 1 of 10)	exon (NM_010016, exon 1 of 10)	122.0	NM_010016	13136.0	Mm.101591	NM_010016	ENSMUSG00000026399	Cd55	Daf|Daf-GPI|Daf1|GPI-DAF	CD55 molecule, decay accelerating factor for complement	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-104493608-4	chr2	104493106	104494106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010434, intron 1 of 15)	CpG	883.0	NM_010434	15259.0	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	33.0	90.0	54.5	25.5	78.5	55.5
Merged-chr5-17880064-4	chr5	17879569	17880569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	8890.0	NM_001159558	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12833323-4	chr19	12832814	12833814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001361971, exon 9 of 9)	exon (NM_001361971, exon 9 of 9)	-28463.0	NM_146702	258697.0	Mm.223132	NM_146702	ENSMUSG00000046272	Olfr1444	MOR202-4	olfactory receptor 1444	protein-coding	19.0	29.0	19.0	29.0	106.0	27.5
Merged-chr13-111490473-1	chr13	111489973	111490973	+	1000.0	f0_c57.idr	promoter-TSS (NM_001122963)	promoter-TSS (NM_001122963)	-346.0	NM_001361924	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155891783-4	chr4	155891278	155892278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207223)	promoter-TSS (NM_207223)	-16.0	NM_001033490	433813.0	Mm.259270	NM_001033490	ENSMUSG00000051557	Pusl1	2810021I11Rik|AI853843|D18346	pseudouridylate synthase-like 1	protein-coding	67.0	113.5	105.5	89.0	101.0	81.0
Merged-chr12-55821099-4	chr12	55820590	55821590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019994, exon 1 of 41)	5' UTR (NM_019994, exon 1 of 41)	426.0	NM_019994	56784.0	Mm.292180	NM_019994	ENSMUSG00000021027	Ralgapa1	2310003F20Rik|4930400K19Rik|AI563624|GRIPE|Garnl1|Tulip1|mKIAA0884	Ral GTPase activating protein, alpha subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99388244-4	chr15	99387797	99388797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4650.0	NM_026669	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13574342-4	chr9	13573854	13574854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45635.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	14.5	55.5	35.5	15.5	55.0	35.0
Merged-chr10-62508612-4	chr10	62508061	62509061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011157)	promoter-TSS (NM_011157)	-804.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29768485-4	chr7	29767977	29768977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023750)	promoter-TSS (NM_023750)	-75.0	NM_023750	74352.0	Mm.251083	NM_023750	ENSMUSG00000046185	Zfp84	2210410P13Rik|4633401C23Rik|AI415447|BB081605|C86188|KRAB18|Zfp69	zinc finger protein 84	protein-coding	75.0	177.0	120.5	75.5	231.0	122.5
Merged-chr11-119375587-4	chr11	119375088	119376088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178743, intron 12 of 16)	intron (NM_178743, intron 12 of 16)	-14884.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	47.0	43.0	41.5	33.5	39.5	43.0
Merged-chr4-44169327-4	chr4	44168816	44169816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1033.0	NM_001038993	73469.0	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158179679-2	chr2	158179179	158180179	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12329.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122650755-4	chr6	122650253	122651253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24329.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	105.0	169.0	137.5	87.5	213.0	95.5
Merged-chr2-166421470-2	chr2	166420970	166421970	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-25981.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59733436-2	chr10	59732936	59733936	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359267, intron 3 of 11)	RMER15|LTR|ERVL	30873.0	NM_001291443	216001.0	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124037094-4	chr5	124036600	124037600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4840.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	11.0	9.5	10.5	4.0	38.0	16.5
Merged-chr18-65695567-4	chr18	65695068	65696068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2700.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	46.5	106.5	78.0	46.5	91.0	75.5
Merged-chr3-121545661-4	chr3	121545172	121546172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13328.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4012845-4	chr19	4012372	4013372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133666)	promoter-TSS (NM_133666)	-117.0	NM_133666	17995.0	Mm.29842	NM_133666	ENSMUSG00000037916	Ndufv1	CI-51kD	NADH dehydrogenase (ubiquinone) flavoprotein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-115828492-4	chr4	115827998	115828998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175308, intron 1 of 3)	intron (NM_175308, intron 1 of 3)	406.0	NM_175308	100465.0	Mm.35571	NM_175308	ENSMUSG00000028709	Mob3c	AW822253|D130076I06Rik|Mobkl2c	MOB kinase activator 3C	protein-coding	53.0	168.0	146.0	59.5	166.0	147.5
Merged-chr11-55131598-2	chr11	55131098	55132098	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172258, exon 8 of 11)	exon (NM_172258, exon 8 of 11)	20108.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15527345-4	chr17	15526867	15527867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008799)	promoter-TSS (NM_008799)	-66.0	NM_008799	18567.0	Mm.323	NM_008799	ENSMUSG00000014771	Pdcd2	AI528543|Pcd2|RP-8	programmed cell death 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27702967-4	chr15	27702509	27703509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21467.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-52712379-4	chr15	52711881	52712881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027212)	promoter-TSS (NM_027212)	-64.0	NM_027212	69790.0	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139197858-3	chr5	139197359	139198359	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2778.0	NM_001256115	77053.0	Mm.210845	NM_024451	ENSMUSG00000036817	Sun1	4632417G13Rik|5730434D03Rik|Unc84a|mKIAA0810	Sad1 and UNC84 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80797998-4	chr10	80797525	80798525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013651)	promoter-TSS (NM_013651)	601.0	NM_023900	78670.0	Mm.41479	NM_023900	ENSMUSG00000035278	Plekhj1	9530063M10Rik	pleckstrin homology domain containing, family J member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71951024-4	chr8	71950540	71951540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164581)	promoter-TSS (NM_001164581)	-26.0	NM_001164581	234413.0	Mm.334607	NM_001164581	ENSMUSG00000052446	Zfp961	A230105L22Rik|BC065788|mszf37|mszf55-2	zinc finger protein 961	protein-coding	23.0	67.0	57.0	18.5	54.5	34.0
Merged-chr8-126837530-4	chr8	126837039	126838039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11481.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	3.5	7.0	1.5	3.5	7.0	2.0
Merged-chr10-59951937-4	chr10	59951414	59952414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029083)	promoter-TSS (NM_029083)	-144.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21444922-2	chr9	21444422	21445422	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 1 of 19)	L1M4|LINE|L1	20014.0	NM_001357719	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69360839-4	chr12	69360355	69361355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3679.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	6.5	44.0	28.5	24.5	36.5	21.5
Merged-chr1-16798504-4	chr1	16798017	16799017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110061.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-110711074-4	chr13	110710574	110711574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-192425.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34348101-2	chr17	34347601	34348601	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3456.0	NM_010381	100504404.0	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	94.0	258.0	126.0	129.0	230.5	131.5
Merged-chr16-31947448-4	chr16	31946956	31947956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027897, exon 1 of 1)	non-coding (NR_027897, exon 1 of 1)	1065.0	NR_027897	106264.0	Mm.347369	NM_025320	ENSMUSG00000107002	0610012G03Rik	AI839730	RIKEN cDNA 0610012G03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97165736-2	chr15	97165236	97166236	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155278, intron 2 of 3)	B1_Mus1|SINE|Alu	1508.0	NR_155278	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65764308-8	chr5	65763784	65764784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024917, intron 1 of 19)	CpG	763.0	NM_001024917	333789.0	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79871939-2	chr11	79871439	79872439	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90448.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4613708-3	chr8	4613219	4614219	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145591, intron 1 of 3)	intron (NM_145591, intron 1 of 3)	549.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141462702-2	chr4	141462202	141463202	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009541, exon 4 of 16)	exon (NM_009541, exon 4 of 16)	18029.0	NM_009541	22642.0	Mm.389590	NM_009541	ENSMUSG00000006215	Zbtb17	AA589413|Lp-1|Miz1|Zfp100|mZ13	zinc finger and BTB domain containing 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135691136-4	chr1	135690624	135691624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28939.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64914792-4	chr9	64914283	64915283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162917, intron 34 of 34)	intron (NM_001162917, intron 34 of 34)	36824.0	NM_144813	214111.0	Mm.156124	NM_144813	ENSMUSG00000034452	Slc24a1	-	solute carrier family 24 (sodium/potassium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111376266-4	chr12	111375770	111376770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183016, intron 1 of 36)	intron (NM_183016, intron 1 of 36)	1448.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164071209-4	chr2	164070685	164071685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291155)	promoter-TSS (NM_001291155)	-16.0	NM_001291155	67145.0	Mm.23173	NM_025996	ENSMUSG00000018322	Tomm34	2610100K07Rik|TOM34	translocase of outer mitochondrial membrane 34	protein-coding	0.0	7.5	5.5	5.0	14.5	9.5
Merged-chr14-55604115-4	chr14	55603609	55604609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159418)	promoter-TSS (NM_001159418)	124.0	NM_001159417	16391.0	Mm.2032	NM_008394	ENSMUSG00000002325	Irf9	Irf-9|Isgf3g|p48	interferon regulatory factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30270347-4	chr2	30269851	30270851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252571, intron 2 of 9)	intron (NM_001252571, intron 2 of 9)	3532.0	NM_001252570	227696.0	Mm.297949	NM_172267	ENSMUSG00000079484	Phyhd1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97767935-4	chr15	97767416	97768416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144850)	promoter-TSS (NM_144850)	-250.0	NM_001357630	223864.0	Mm.24028	NM_144850	ENSMUSG00000022469	Rapgef3	2310016P22Rik|9330170P05Rik|Epac|Epac1	Rap guanine nucleotide exchange factor (GEF) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137785747-2	chr5	137785247	137786247	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_144913, exon 1 of 4)	exon (NM_144913, exon 1 of 4)	954.0	NM_144913	231803.0	Mm.61193	NM_144913	ENSMUSG00000029726	Mepce	Bcdin3|D5Wsu46e	methylphosphate capping enzyme	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-24899847-3	chr9	24899347	24900347	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74361.0	NR_153861	102631612.0	Mm.410759	NR_153861		E130101E03Rik	-	RIKEN cDNA E130101E03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-74617659-7	chr13	74617156	74618156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22197.0	NM_030711	80898.0	Mm.83526	NM_030711	ENSMUSG00000021583	Erap1	A-LAP|ARTS-1|Arts1|ERAAP|PILSA|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding	5.5	18.0	5.0	12.0	10.0	14.5
Merged-chr2-33431521-4	chr2	33431008	33432008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276332)	promoter-TSS (NM_001276332)	-184.0	NM_001276332	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4315298-4	chr18	4314824	4315824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37629.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37642568-4	chr13	37642097	37643097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-183441.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	33.0	54.0	23.5	30.0	30.0	19.5
Merged-chr5-72223110-4	chr5	72222604	72223604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 1 of 22)	intron (NR_003966, intron 1 of 22)	19761.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54918099-4	chr18	54917595	54918595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	72085.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-31736275-4	chr11	31735776	31736776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-64414.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	37.5	94.0	77.0	35.0	50.0	30.5
Merged-chr9-21723539-4	chr9	21722998	21723998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010700)	promoter-TSS (NM_010700)	-78.0	NM_001252658	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82952098-4	chr11	82951646	82952646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183201)	promoter-TSS (NM_183201)	44.0	NM_183201	327978.0	Mm.42147	NM_183201	ENSMUSG00000054404	Slfn5	AI956840	schlafen 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-131855203-4	chr4	131854698	131855698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025297, intron 3 of 9)	intron (NM_025297, intron 3 of 9)	11727.0	NM_025297	26922.0	Mm.192706	NM_025297	ENSMUSG00000028910	Mecr	AI195831|NRBF-1|Nrbf1	mitochondrial trans-2-enoyl-CoA reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-140961254-4	chr4	140960763	140961763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023374)	promoter-TSS (NM_023374)	-8.0	NM_001355515	67680.0	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24601352-2	chr5	24600852	24601852	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025891, intron 1 of 12)	intron (NM_025891, intron 1 of 12)	650.0	NM_025891	66993.0	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-93988092-4	chr11	93987599	93988599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7992.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0.5	8.5	1.5	10.0	4.5	14.5
Merged-chr17-78200172-4	chr17	78199606	78200606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015800)	promoter-TSS (NM_015800)	-142.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-7608765-2	chr18	7608261	7609261	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360860)	promoter-TSS (NM_001360860)	-607.0	NM_001360860	75739.0	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	6.0	10.5	8.0	4.5	9.5	5.5
Merged-chr9-66837492-2	chr9	66836996	66837996	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2790.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128654632-4	chr4	128654114	128655114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195130)	promoter-TSS (NM_001195130)	-88.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90830059-4	chr16	90829557	90830557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_133572)	promoter-TSS (NR_133572)	-802.0	NR_133572	70967.0	Mm.253077	NM_027627	ENSMUSG00000039903	Eva1c	1700092M14Rik|4931408A02Rik|Fam176c	eva-1 homolog C (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114102349-2	chr5	114101849	114102849	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033202, intron 1 of 12)	intron (NM_001033202, intron 1 of 12)	2016.0	NM_001033202	100756.0	Mm.240421	NM_001033202	ENSMUSG00000029592	Usp30	6330590F17Rik|AI851327|D5Ertd483e	ubiquitin specific peptidase 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129545658-4	chr2	129545163	129546163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9061.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	82.0	154.5	149.0	93.5	104.5	133.0
Merged-chr5-137294532-4	chr5	137294024	137295024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027356)	promoter-TSS (NM_027356)	-145.0	NM_027356	70240.0	Mm.124666	NM_027356	ENSMUSG00000051502	Ufsp1	2700038N03Rik|D5Ertd655e	UFM1-specific peptidase 1	protein-coding	5.0	7.5	4.5	11.0	2.5	4.5
Merged-chr11-55453825-4	chr11	55453349	55454349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 2 of 3)	intron (NM_009720, intron 2 of 3)	7359.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171844364-4	chr1	171843878	171844878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289470, intron 2 of 8)	intron (NM_001289470, intron 2 of 8)	4681.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	108.0	147.5	144.5	91.5	149.0	129.5
Merged-chr1-189799152-4	chr1	189798651	189799651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008976, intron 3 of 18)	intron (NM_008976, intron 3 of 18)	70883.0	NM_008976	19250.0	Mm.4498	NM_008976	ENSMUSG00000026604	Ptpn14	C130080N23Rik|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding	5.5	13.0	30.5	2.5	10.5	13.0
Merged-chr10-30655860-4	chr10	30655359	30656359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111267)	promoter-TSS (NM_001111267)	8.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8981421-2	chr3	8980921	8981921	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-17275.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	33.5	83.5	56.0	57.0	113.5	70.5
Merged-chr19-29812966-4	chr19	29812452	29813452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177721)	promoter-TSS (NM_177721)	22.0	NM_177721	240614.0	Mm.125503	NM_177721	ENSMUSG00000074909	Ranbp6	C630001B19	RAN binding protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135963637-4	chr4	135963131	135964131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356493)	promoter-TSS (NM_001356493)	-94.0	NM_001356493	74246.0	Mm.247946	NM_178389	ENSMUSG00000028671	Gale	2310002A12Rik|AI323962	galactose-4-epimerase, UDP	protein-coding	3.5	43.0	16.0	3.0	19.5	18.0
Merged-chr17-23823919-1	chr17	23823419	23824419	+	1000.0	f1_balb.idr	TTS (NM_026305)	TTS (NM_026305)	628.0	NR_039586	100628593.0		NR_039586	ENSMUSG00000092981	Mir5125	mmu-mir-5125|mu-mir-5125	microRNA 5125	ncRNA	4.5	0.0	1.5	8.0	0.0	2.0
Merged-chr18-56467356-4	chr18	56466881	56467881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	35249.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	28.5	43.5	15.5	28.5	43.5	15.5
Merged-chr1-43912979-2	chr1	43912479	43913479	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger17c|DNA|TcMar-Tigger	-21015.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-79515676-4	chr14	79515192	79516192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286412)	promoter-TSS (NM_001286412)	18.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120505516-4	chr5	120505019	120506019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1896.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-85400652-4	chr9	85400169	85401169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73519.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	22.5	32.5	19.0	18.0	34.5	19.0
Merged-chr7-4498400-4	chr7	4497900	4498900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029834, intron 1 of 21)	intron (NM_029834, intron 1 of 21)	3280.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103406026-4	chr11	103405516	103406516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 1 of 11)	intron (NM_183034, intron 1 of 11)	6648.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	5.5	32.5	20.0	5.0	19.0	11.0
Merged-chr1-163403735-4	chr1	163403243	163404243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132627)	promoter-TSS (NR_132627)	-74.0	NM_178883	98376.0	Mm.32901	NM_178883	ENSMUSG00000040124	Gorab	NTKL-BP1|SCYL1-BP1|Scyl1bp1	golgin, RAB6-interacting	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91729217-4	chr16	91728724	91729724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133679)	promoter-TSS (NM_133679)	-147.0	NM_001110275	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	3.0	11.5	1.0	2.5	18.5	12.5
Merged-chr17-5576897-4	chr17	5576410	5577410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	84310.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39802264-4	chr18	39801751	39802751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28754.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23107403-4	chr16	23106898	23107898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001123037)	promoter-TSS (NM_001123037)	-70.0	NR_152586	13682.0	Mm.260084	NM_013506	ENSMUSG00000022884	Eif4a2	4833432N07Rik|BM-010|Ddx2b|Eif4|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102250748-4	chr7	102250249	102251249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019566)	promoter-TSS (NM_019566)	-631.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	61.0	158.5	102.5	38.5	101.0	85.5
Merged-chr4-150855046-4	chr4	150854545	150855545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040649)	promoter-TSS (NR_040649)	-25.0	NM_133753	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36032756-4	chr17	36032254	36033254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010398)	promoter-TSS (NM_010398)	-53.0	NM_010398	15040.0	Mm.439648	NM_010398	ENSMUSG00000067212	H2-T23	37b|37c|H-2T23|H2-Qa1|Qa-1|Qa-1(b)|Qa1|Qed-1|T18c|T18c(37)|T23b|T23d	histocompatibility 2, T region locus 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-37236225-2	chr11	37235725	37236725	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-291984.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123282701-4	chr4	123282217	123283217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356377)	promoter-TSS (NM_001356377)	-194.0	NM_148917	230721.0	Mm.277091	NM_130881	ENSMUSG00000011257	Pabpc4	-	poly(A) binding protein, cytoplasmic 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165949840-4	chr2	165949358	165950358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42779.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-86999235-4	chr3	86998733	86999733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007639, exon 1 of 6)	exon (NM_007639, exon 1 of 6)	107.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	39.0	52.0	29.5	10.0	64.0	36.5
Merged-chr19-10691499-2	chr19	10690999	10691999	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	L1MEc|LINE|L1	2764.0	NM_001361959	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-92980973-4	chr7	92980464	92981464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98915.0	NM_021427	58238.0	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	2.0	3.5	2.0	0.0	0.0	4.0
Merged-chr17-51477517-4	chr17	51477022	51478022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037268, intron 3 of 4)	intron (NR_037268, intron 3 of 4)	-29253.0	NR_046166	328837.0	Mm.236143	NR_046166		C330011F03Rik	C330011F03	RIKEN cDNA C330011F03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98880300-4	chr10	98879796	98880796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34346.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106487890-4	chr11	106487378	106488378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023913)	promoter-TSS (NM_023913)	-82.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8169045-4	chr15	8168533	8169533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162906)	promoter-TSS (NM_001162906)	-73.0	NM_001162906	73692.0	Mm.164436	NM_001162906	ENSMUSG00000039801	2410089E03Rik	4732468D17Rik|Hug|Jbts17|b2b012Clo	RIKEN cDNA 2410089E03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-15995702-4	chr4	15995191	15996191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145950)	TTS (NM_145950)	18147.0	NM_001355615	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134830110-4	chr6	134829613	134830613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177687)	promoter-TSS (NM_177687)	-86.0	NM_177687	232430.0	Mm.267010	NM_177687	ENSMUSG00000032652	Crebl2	AI046348|B230205M03	cAMP responsive element binding protein-like 2	protein-coding	36.5	172.0	84.0	46.0	99.0	70.0
Merged-chr16-23296985-4	chr16	23296489	23297489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252506, intron 1 of 6)	intron (NM_001252506, intron 1 of 6)	6519.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-77460028-4	chr5	77459514	77460514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5474.0	NR_131050	69370.0	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118618586-2	chr9	118618086	118619086	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	11877.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100992151-4	chr7	100991639	100992639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19859.0	NM_001302347	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	39.5	32.5	43.5	46.5	112.5	53.5
Merged-chr19-38396038-4	chr19	38395538	38396538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175507)	promoter-TSS (NM_175507)	58.0	NM_175507	240660.0	Mm.262085	NM_175507	ENSMUSG00000044026	Slc35g1	AA590464|D330039I19Rik|Tmem20	solute carrier family 35, member G1	protein-coding	2.0	0.0	0.0	0.0	7.0	0.0
Merged-chr14-66872771-4	chr14	66872278	66873278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3928.0	NM_001034881	432870.0	Mm.425890	NM_001034881	ENSMUSG00000075553	Gm5464	EG432870	predicted gene 5464	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45530861-4	chr4	45530365	45531365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033306)	promoter-TSS (NM_001033306)	-37.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	13.5	47.0	22.5	38.5	28.5	20.5
Merged-chr7-132804185-4	chr7	132803687	132804687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	9009.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137350917-1	chr4	137350417	137351417	+	1000.0	f1_balb.idr	intron (NM_009861, intron 1 of 5)	B3|SINE|B2	6842.0	NM_009861	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	21.5	87.0	45.0	15.0	47.0	38.5
Merged-chr16-33933474-4	chr16	33932966	33933966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	33572.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30828358-4	chr2	30827858	30828858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133346)	promoter-TSS (NM_133346)	-58.0	NM_133346	72323.0	Mm.27656	NM_133346	ENSMUSG00000039483	Asb6	2510004M11Rik|AA409356	ankyrin repeat and SOCS box-containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43321662-4	chr1	43321167	43322167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124084.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29794764-4	chr6	29794285	29795285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	intron (NM_001171000, intron 1 of 16)	26342.0	NM_001171000	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-83309082-4	chr4	83308585	83309585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 1 of 19)	MTC|LTR|ERVL-MaLR	15104.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-94975222-4	chr3	94974727	94975727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293716, intron 1 of 9)	intron (NM_001293716, intron 1 of 9)	496.0	NM_001293716	107650.0	Mm.217222	NM_175356	ENSMUSG00000038861	Pi4kb	ESTM41|PI4K-beta|PI4Kbeta|Pik4cb	phosphatidylinositol 4-kinase beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52944881-2	chr2	52944381	52945381	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	87013.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110889196-4	chr12	110888704	110889704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027223)	promoter-TSS (NM_027223)	-59.0	NM_026048	67236.0	Mm.287157	NM_026048	ENSMUSG00000021276	Cinp	1810047K05Rik|2810452K22Rik	cyclin-dependent kinase 2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-49979900-1	chr18	49979400	49980400	+	1000.0	f1_balb.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	473.0	NM_001177759	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0.0	11.5	4.0	5.5	8.5	3.0
Merged-chr16-5254497-4	chr16	5253986	5254986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027446, intron 1 of 7)	intron (NM_027446, intron 1 of 7)	1470.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116436903-4	chr11	116436405	116437405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176902, intron 2 of 2)	intron (NM_176902, intron 2 of 2)	2692.0	NR_003376	664849.0	Mm.258466	NR_003376		Gm7367	EG664849	1110014K08Rik pseudogene	pseudo	21.0	42.0	13.0	17.5	21.0	7.0
Merged-chr13-51651740-4	chr13	51651242	51652242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029279)	promoter-TSS (NM_029279)	34.0	NM_029279	75420.0	Mm.275981	NM_029279	ENSMUSG00000035139	Secisbp2	2210413N07Rik|2810012K13Rik|SBP2	SECIS binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24632468-2	chr10	24631968	24632968	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	37026.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35023432-2	chr7	35022932	35023932	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 11 of 14)	intron (NM_008820, intron 11 of 14)	33134.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	4.5	0.5	0.0	0.0	3.0	0.0
Merged-chr6-114742409-4	chr6	114741908	114742908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 18 of 19)	intron (NM_001253718, intron 18 of 19)	99311.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88075259-4	chr6	88074769	88075769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9204.0	NM_133933	103963.0	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122567722-4	chr8	122567222	122568222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026014)	promoter-TSS (NM_026014)	-293.0	NM_026014	67177.0	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	85.5	115.5	124.0	97.5	138.5	131.0
Merged-chr9-58253155-4	chr9	58252653	58253653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026942)	promoter-TSS (NM_026942)	-11.0	NR_028146	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5878159-2	chr19	5877659	5878659	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134154, exon 1 of 6)	5' UTR (NM_134154, exon 1 of 6)	337.0	NM_001361974	107375.0	Mm.5323	NM_134154	ENSMUSG00000024818	Slc25a45	AW491445	solute carrier family 25, member 45	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3221882-4	chr8	3221378	3222378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330056, intron 2 of 21)	intron (NM_001330056, intron 2 of 21)	57739.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0.0	13.0	5.5	0.0	2.5	1.5
Merged-chr18-60500096-4	chr18	60499593	60500593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134133, intron 1 of 1)	intron (NM_134133, intron 1 of 1)	1890.0	NM_134133	106878.0	Mm.273197	NM_134133	ENSMUSG00000038059	Smim3	2010002N04Rik|AI195350|AW561905|Nid67|cI-41	small integral membrane protein 3	protein-coding	4.0	20.0	6.5	7.0	38.0	20.5
Merged-chr11-110993802-4	chr11	110993312	110994312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252207, intron 2 of 2)	intron (NM_001252207, intron 2 of 2)	-3675.0	NM_001252209	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	148.0	322.5	247.5	150.0	235.5	223.0
Merged-chr5-144014901-4	chr5	144014401	144015401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177682)	promoter-TSS (NM_177682)	-48.0	NM_177682	231874.0	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	0.0	12.0	10.5	0.0	11.5	9.5
Merged-chr5-103721678-4	chr5	103721156	103722156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32506.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106038326-2	chr1	106037826	106038826	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	47920.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139787710-2	chr5	139787210	139788210	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3826.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	0.0	6.5	0.0	0.0	2.0	0.0
Merged-chr4-132802420-4	chr4	132801938	132802938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6074.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-32529427-4	chr3	32528943	32529943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024200)	promoter-TSS (NM_024200)	-39.0	NM_024200	67414.0	Mm.290414	NM_024200	ENSMUSG00000027668	Mfn1	2310002F04Rik|6330416C07Rik|D3Ertd265e|HR2|mKIAA4032	mitofusin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77314901-4	chr10	77314405	77315405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024838, intron 6 of 11)	MTE2b|LTR|ERVL-MaLR	55605.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13701949-4	chr9	13701445	13702445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173776, intron 2 of 3)	intron (NM_173776, intron 2 of 3)	39485.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-51493731-1	chr1	51493231	51494231	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-15332.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19228195-4	chr7	19227713	19228713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207525)	promoter-TSS (NM_207525)	-176.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	100.5	253.0	191.0	108.0	218.0	186.0
Merged-chr19-5573874-2	chr19	5573374	5574374	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	5850.0	NM_001033448	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-154097868-4	chr1	154097370	154098370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-103317.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8793426-4	chr4	8792929	8793929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 2 of 36)	L1MA4|LINE|L1	42105.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	2.0	2.0	0.0	0.0	0.0
Merged-chr15-53140466-4	chr15	53139952	53140952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	205731.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74369150-2	chr1	74368636	74369636	+	1000.0	f0_balb.idr|f0_c57.idr	3' UTR (NM_001033345, exon 10 of 10)	3' UTR (NM_001033345, exon 10 of 10)	-6067.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51527107-4	chr10	51526646	51527646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MuRRS4-int|LTR|ERV1	36248.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128131528-4	chr10	128131012	128132012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019711, exon 13 of 13)	3' UTR (NM_019711, exon 13 of 13)	38729.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172335964-4	chr1	172335466	172336466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5244.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	56.5	85.0	80.0	59.0	209.0	164.0
Merged-chr8-70629940-4	chr8	70629441	70630441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001330687, exon 3 of 3)	exon (NM_001330687, exon 3 of 3)	2154.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	117.0	188.5	149.0	65.0	66.5	92.0
Merged-chr17-53587251-4	chr17	53586754	53587754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190846, intron 1 of 17)	intron (NM_001190846, intron 1 of 17)	3128.0	NM_001190846	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	4.0	34.0	19.0	8.5	11.5	9.5
Merged-chr19-40630831-4	chr19	40630325	40631325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	L1MDa|LINE|L1	18459.0	NM_001304721	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	43.5	100.0	113.5	55.5	110.0	112.0
Merged-chr11-114890246-4	chr11	114889767	114890767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001347654, exon 1 of 7)	5' UTR (NM_001347654, exon 1 of 7)	226.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-75315622-4	chr4	75315129	75316129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37337.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43250893-4	chr7	43250394	43251394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	36855.0	NM_001177525	100170401.0		NM_001177525		EU599041	TU7	expressed sequence EU599041	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117241266-4	chr8	117240775	117241775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-15744.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-67069406-4	chr6	67068904	67069904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040278, intron 4 of 6)	Lx5|LINE|L1	-31997.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-38779197-1	chr12	38778697	38779697	+	1000.0	f0_c57.idr	promoter-TSS (NM_007960)	promoter-TSS (NM_007960)	-885.0	NM_001347379	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	16.5	13.5	29.5	12.0	37.5	25.5
Merged-chr17-64617999-4	chr17	64617495	64618495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	16346.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19311485-6	chr3	19310985	19311985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122759)	promoter-TSS (NM_001122759)	-163.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	1.5	5.0	7.5	0.0	0.5	5.5
Merged-chr7-27577134-4	chr7	27576619	27577619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175107, intron 8 of 9)	Lx8|LINE|L1	-14433.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	35.0	118.0	63.0	38.0	123.0	62.0
Merged-chr1-36556735-4	chr1	36556229	36557229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304329, intron 1 of 14)	intron (NM_001304329, intron 1 of 14)	828.0	NM_001304330	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37355787-4	chr13	37355291	37356291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	10446.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	42.5	80.0	41.5	53.5	72.5	54.5
Merged-chr5-125434145-4	chr5	125433646	125434646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_203319)	promoter-TSS (NM_203319)	-98.0	NM_203319	208144.0	Mm.296385	NM_203319	ENSMUSG00000029480	Dhx37	Gm1050|Gm451|mKIAA1517	DEAH (Asp-Glu-Ala-His) box polypeptide 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-17097885-3	chr1	17097368	17098368	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020604)	promoter-TSS (NM_020604)	21.0	NM_020604	57339.0	Mm.143761	NM_020604	ENSMUSG00000042686	Jph1	JP-1|Jp1	junctophilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-53876164-4	chr1	53875690	53876690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 17 of 28)	intron (NM_001001883, intron 17 of 28)	26766.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	34.0	66.5	46.5	31.5	49.0	58.0
Merged-chr8-104239738-4	chr8	104239225	104240225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045642, intron 4 of 8)	PB1D10|SINE|Alu	8833.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99090115-4	chr9	99089606	99090606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 7 of 23)	intron (NM_029094, intron 7 of 23)	50105.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100067608-4	chr12	100067108	100068108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC4a|LINE|L1	-44723.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13239134-2	chr16	13238634	13239634	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17347.0	NM_001122667	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-137687913-4	chr6	137687416	137688416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38631.0	NM_007945	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114879834-4	chr11	114879336	114880336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10205.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161035059-4	chr1	161034566	161035566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151478)	promoter-TSS (NR_151478)	150.0	NR_153812	14455.0	Mm.270065	NR_002840	ENSMUSG00000053332	Gas5	Gas-5|Mir5117|Snhg2	growth arrest specific 5	ncRNA	69.5	141.0	162.5	40.0	162.5	101.0
Merged-chr7-43353332-4	chr7	43352853	43353853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145581, intron 5 of 9)	intron (NM_145581, intron 5 of 9)	2012.0	NM_145581	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76723867-4	chr15	76723374	76724374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176828)	promoter-TSS (NM_176828)	-29.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	31.0	113.0	63.5	46.0	123.0	60.5
Merged-chr12-102469570-4	chr12	102469062	102470062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013747)	promoter-TSS (NM_013747)	-348.0	NM_013747	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	189.5	400.5	245.0	108.5	381.0	256.0
Merged-chr17-26465195-4	chr17	26464686	26465686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43286.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	181.0	463.0	419.5	74.5	267.0	180.0
Merged-chr15-84988079-4	chr15	84987585	84988585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033273)	promoter-TSS (NM_001033273)	-114.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60003139-4	chr10	60002634	60003634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347451)	promoter-TSS (NM_001347451)	1.0	NM_001347451	52717.0	Mm.21793	NM_025514	ENSMUSG00000020107	Anapc16	2310005G07Rik|APC16|D10Ertd641e	anaphase promoting complex subunit 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64887236-4	chr5	64886735	64887735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45464.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86918973-2	chr17	86918477	86919477	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277980, intron 2 of 2)	B2_Mm2|SINE|B2	1629.0	NM_030104	78469.0	Mm.67234	NM_030104	ENSMUSG00000037689	Tmem247	1700090G07Rik	transmembrane protein 247	protein-coding	0.0	0.0	0.5	0.5	0.0	0.0
Merged-chr7-132243070-4	chr7	132242563	132243563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029935, intron 6 of 7)	intron (NM_029935, intron 6 of 7)	-72601.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65697918-4	chr5	65697385	65698385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081321)	promoter-TSS (NM_001081321)	-29.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	17.5	18.0	15.0	6.5	12.5	21.0
Merged-chr19-34524857-6	chr19	34524409	34525409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021460, intron 1 of 9)	intron (NM_021460, intron 1 of 9)	2565.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	19.5	67.0	44.0	19.5	68.5	43.5
Merged-chr7-80802823-1	chr7	80802323	80803323	+	1000.0	f0_balb.idr	intron (NM_016721, intron 1 of 37)	intron (NM_016721, intron 1 of 37)	508.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	11.0	27.5	9.5	12.5	35.0	12.5
Merged-chr6-145341962-4	chr6	145341468	145342468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45657.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	96.0	264.5	212.0	95.0	257.5	262.0
Merged-chr8-13648584-4	chr8	13648085	13649085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	(TTCCC)n|Simple_repeat|Simple_repeat	29002.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	78.0	93.0	74.5	67.5	93.0	74.5
Merged-chr2-25196825-4	chr2	25196346	25197346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146115)	promoter-TSS (NM_146115)	-33.0	NM_146115	227612.0	Mm.119747	NM_146115	ENSMUSG00000059555	Tor4a	A830007P12Rik	torsin family 4, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-28037386-4	chr5	28036883	28037883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34029.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-67043955-4	chr9	67043449	67044449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164254)	promoter-TSS (NM_001164254)	-78.0	NM_001164256	22003.0	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|TPM1kappa|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-108248513-4	chr11	108248005	108249005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	95383.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0.5	0.0	2.0	0.5	2.0	3.5
Merged-chr2-33353638-4	chr2	33353136	33354136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290570, intron 1 of 16)	intron (NM_001290570, intron 1 of 16)	17858.0	NM_001290570	241308.0	Mm.274249	NM_175211	ENSMUSG00000038831	Ralgps1	5830418G11Rik|AI853783|AI854138|RALGEF2|RALGPS1A|RalGEF 2|mKIAA0351	Ral GEF with PH domain and SH3 binding motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127324707-4	chr10	127324209	127325209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359657)	promoter-TSS (NM_001359657)	-933.0	NM_001359657	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	7.0	16.0	8.5	5.5	32.0	11.0
Merged-chr4-149792443-4	chr4	149791928	149792928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18161.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83054583-4	chr6	83054087	83055087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007517)	promoter-TSS (NM_007517)	-16.0	NM_019752	64704.0	Mm.21880	NM_019752	ENSMUSG00000068329	Htra2	AI481710|Omi|Prss25|mnd2	HtrA serine peptidase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32619682-4	chr11	32619188	32620188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 18 of 18)	intron (NM_009288, intron 18 of 18)	-22867.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	4.5	4.0	6.0	4.5	4.0	5.5
Merged-chr13-9022808-4	chr13	9022307	9023307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26795.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13560453-4	chr10	13559919	13560919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025748, intron 3 of 5)	intron (NM_025748, intron 3 of 5)	-7277.0	NM_001347361	56535.0	Mm.282711	NM_019961	ENSMUSG00000019809	Pex3	1700014F15Rik|2810027F19Rik|2900010N04Rik	peroxisomal biogenesis factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117818758-4	chr10	117818206	117819206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 5 of 7)	intron (NM_024457, intron 5 of 7)	-26001.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67594743-2	chr10	67594243	67595243	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	FordPrefect|DNA|hAT-Tip100	-22784.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122653874-4	chr6	122653369	122654369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27445.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129595790-1	chr2	129595290	129596290	+	1000.0	f0_balb.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	328.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	301.5	680.5	582.0	345.5	807.0	589.0
Merged-chr15-33211578-4	chr15	33211059	33212059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018755, intron 2 of 8)	intron (NM_018755, intron 2 of 8)	128430.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180393239-4	chr1	180392730	180393730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-62681.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65199579-4	chr5	65199059	65200059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153391)	promoter-TSS (NM_153391)	-137.0	NM_001359880	213081.0	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35802304-4	chr16	35801778	35802778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152314, intron 3 of 8)	intron (NR_152314, intron 3 of 8)	31892.0	NM_175111	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	5.0	3.5	0.0	0.0	0.0	1.5
Merged-chr8-122718497-2	chr8	122717997	122718997	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-19388.0	NM_009824	12398.0	Mm.194339	NM_009824	ENSMUSG00000006362	Cbfa2t3	A630044F12Rik|AI465270|AW229127|Cbfa2t3h|ETO-2|Eto2|MTGR2	core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	protein-coding	0.0	0.0	5.0	0.0	0.0	0.5
Merged-chr4-53120549-4	chr4	53120033	53121033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	39362.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139329632-2	chr5	139329132	139330132	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-4168.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46952872-2	chr8	46952372	46953372	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34015.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-85184480-4	chr10	85183999	85184999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007771, exon 1 of 13)	5' UTR (NM_007771, exon 1 of 13)	555.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103478158-4	chr14	103477651	103478651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35190.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126848279-4	chr8	126847792	126848792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151740)	promoter-TSS (NR_151740)	-728.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8913773-2	chr4	8913273	8914273	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	162449.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-22356206-4	chr6	22355706	22356706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138587)	promoter-TSS (NM_138587)	-125.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56183955-4	chr17	56183430	56184430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080837)	promoter-TSS (NM_080837)	-10.0	NM_080837	28106.0	Mm.294870	NM_080837	ENSMUSG00000019579	Mydgf	D17Wsu104e|Il25|Ly6elg	myeloid derived growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70497895-4	chr11	70497384	70498384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7390.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34314223-4	chr13	34313723	34314723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 1 of 10)	intron (NM_001033167, intron 1 of 10)	30959.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-162931332-6	chr2	162930809	162931809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026499)	promoter-TSS (NM_026499)	-199.0	NM_026499	67996.0	Mm.24042	NM_026499	ENSMUSG00000016921	Srsf6	1210001E11Rik|AI314910|AW146126|Sfrs6	serine/arginine-rich splicing factor 6	protein-coding	17.5	36.0	45.0	65.5	50.0	26.0
Merged-chr11-100850592-4	chr11	100850070	100851070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113563)	promoter-TSS (NM_001113563)	15.0	NM_001113563	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-9132312-4	chr16	9131820	9132820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	302220.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141065305-4	chr4	141064816	141065816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4771.0	NM_001145958	230872.0	Mm.80685	NM_172122	ENSMUSG00000040860	Crocc	-	ciliary rootlet coiled-coil, rootletin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150750837-4	chr2	150750319	150751319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355068, intron 1 of 13)	intron (NM_001355068, intron 1 of 13)	1738.0	NM_172117	12497.0	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90198386-2	chr16	90197886	90198886	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22356.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85256342-4	chr12	85255850	85256850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175337, intron 5 of 11)	MER44B|DNA|TcMar-Tigger	-10365.0	NR_105903	102466769.0		NR_105903	ENSMUSG00000098263	Mir6938	Gm27519|mmu-mir-6938	microRNA 6938	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46563962-4	chr4	46563442	46564442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 1 of 11)	intron (NM_001164804, intron 1 of 11)	2498.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	42.0	106.0	96.0	61.5	135.0	141.5
Merged-chr10-10472451-4	chr10	10471936	10472936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127353)	promoter-TSS (NM_001127353)	-122.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-125435683-7	chr1	125435189	125436189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205385)	promoter-TSS (NM_001205385)	38.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-22727337-4	chr2	22726836	22727836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-46991.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119603103-6	chr11	119602645	119603645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001306081, exon 1 of 33)	5' UTR (NM_001306081, exon 1 of 33)	240.0	NM_028898	74370.0	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120584948-2	chr8	120584448	120585448	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178856, intron 3 of 4)	intron (NM_178856, intron 3 of 4)	4127.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-26772415-4	chr10	26771937	26772937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176837)	promoter-TSS (NM_176837)	-75.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.0	0.0	0.0	0.0	1.0	2.0
Merged-chr11-72215628-2	chr11	72215124	72216124	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_026068)	promoter-TSS (NM_026068)	-32.0	NM_026068	67279.0	Mm.159496	NM_026068	ENSMUSG00000020801	Med31	3110004H13Rik|CGI-125|l11Jus15	mediator complex subunit 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54865901-2	chr11	54865401	54866401	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008248)	promoter-TSS (NM_008248)	-482.0	NM_008248	15254.0	Mm.425	NM_008248	ENSMUSG00000020267	Hint1	AA673479|Hint|Ipk1|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73557511-2	chr7	73557011	73558011	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_037569, intron 1 of 4)	intron (NR_037569, intron 1 of 4)	884.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121907756-4	chr8	121907260	121908260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033485)	promoter-TSS (NM_001033485)	-73.0	NM_001033485	407789.0	Mm.436576	NM_001033485		BC048644	-	cDNA sequence BC048644	protein-coding	3.0	2.0	20.0	8.5	7.5	11.0
Merged-chr4-144899333-2	chr4	144898833	144899833	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	6196.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120404147-4	chr2	120403620	120404620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110496)	promoter-TSS (NM_001110496)	-4.0	NM_001110496	211499.0	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45407628-1	chr9	45407128	45408128	+	1000.0	f1_balb.idr	intron (NM_007503, intron 1 of 5)	intron (NM_007503, intron 1 of 5)	1551.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	1.0	14.0	1.0	3.0	12.5	7.5
Merged-chr18-4797956-4	chr18	4797453	4798453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14533.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77581656-4	chr10	77581163	77582163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145925)	promoter-TSS (NM_145925)	8.0	NM_145925	108705.0	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540|PBF	pituitary tumor-transforming 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80148926-4	chr10	80148431	80149431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305799)	promoter-TSS (NM_001305799)	659.0	NM_001347117	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27596927-4	chr15	27596437	27597437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25443.0	NR_106065	102466808.0		NR_106065	ENSMUSG00000098416	Mir7117	Gm27729|mmu-mir-7117	microRNA 7117	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-68129239-4	chr7	68128747	68129747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	134986.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101649061-4	chr7	101648555	101649555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14713.0	NM_009191	20480.0	Mm.3990	NM_009191	ENSMUSG00000001829	Clpb	AL118244|Skd3	ClpB caseinolytic peptidase B	protein-coding	5.0	10.0	15.0	4.0	15.0	14.5
Merged-chr6-120172798-2	chr6	120172298	120173298	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	L1MD3|LINE|L1	-21025.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	2.5	4.0	16.5	2.5	7.0	1.0
Merged-chr13-9454909-4	chr13	9454387	9455387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	178362.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148489114-4	chr2	148488620	148489620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-45585.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-178369058-4	chr1	178368570	178369570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-31255.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113351812-4	chr6	113351300	113352300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7878.0	NM_133926	52163.0	Mm.277373	NM_133926	ENSMUSG00000030272	Camk1	AI505105|CaMKIalpha|D6Ertd263e	calcium/calmodulin-dependent protein kinase I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116193543-4	chr6	116193056	116194056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177412)	promoter-TSS (NM_177412)	-182.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101265289-4	chr4	101264788	101265788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146145)	promoter-TSS (NM_146145)	-6.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116110304-4	chr11	116109794	116110794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172570)	promoter-TSS (NM_172570)	-59.0	NM_172570	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-72917537-4	chr17	72917042	72918042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029999)	promoter-TSS (NM_029999)	-763.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0.5	16.5	5.5	1.0	5.5	1.0
Merged-chr8-128694689-4	chr8	128694201	128695201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010578, intron 1 of 15)	MTC|LTR|ERVL-MaLR	9047.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36720393-4	chr16	36719908	36720908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285791, intron 5 of 6)	intron (NM_001285791, intron 5 of 6)	26430.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93452381-1	chr10	93451881	93452881	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-1015.0	NM_001313897	16993.0	Mm.271071	NM_008517	ENSMUSG00000015889	Lta4h	-	leukotriene A4 hydrolase	protein-coding	5.0	11.0	14.0	17.0	9.5	3.5
Merged-chr13-46728036-4	chr13	46727524	46728524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175749)	promoter-TSS (NM_175749)	-175.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	9.0	11.5	12.0	0.0	25.5	11.5
Merged-chr11-52072055-4	chr11	52071551	52072551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166654, intron 13 of 13)	intron (NM_001166654, intron 13 of 13)	-26773.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25504290-4	chr9	25503805	25504805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	22708.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94386915-2	chr8	94386441	94387441	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357205, intron 1 of 7)	intron (NM_001357205, intron 1 of 7)	512.0	NM_022331	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	57.0	164.5	113.0	57.0	160.5	97.5
Merged-chr10-80185047-2	chr10	80184547	80185547	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007909, intron 1 of 3)	intron (NM_007909, intron 1 of 3)	5565.0	NM_007909	13637.0	Mm.1478	NM_007909	ENSMUSG00000003070	Efna2	CEK7L|Elf1|Epl6|Eplg6|Lerk6	ephrin A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58385042-4	chr13	58384538	58385538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027335, exon 1 of 4)	exon (NM_027335, exon 1 of 4)	187.0	NM_027335	70153.0	Mm.296610	NM_027335	ENSMUSG00000021550	2210016F16Rik	-	RIKEN cDNA 2210016F16 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13660452-4	chr8	13659933	13660933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	17154.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	9.0	10.5	8.0	7.5	19.0	11.0
Merged-chr3-127789934-4	chr3	127789426	127790426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145133)	promoter-TSS (NM_145133)	54.0	NM_145133	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	161.0	393.0	190.0	126.5	245.5	199.0
Merged-chr11-114927364-4	chr11	114926873	114927873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347651, intron 2 of 3)	intron (NM_001347651, intron 2 of 3)	7013.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21735794-4	chr5	21735292	21736292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-1368.0	NM_028431	73078.0	Mm.301655	NM_028431	ENSMUSG00000029017	Pmpcb	3110004O18Rik|MPP11|MPPB|MPPP52	peptidase (mitochondrial processing) beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100081327-4	chr15	100080823	100081823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037311, intron 3 of 3)	intron (NR_037311, intron 3 of 3)	42659.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142905981-4	chr5	142905496	142906496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007393, intron 1 of 5)	CpG	758.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93459821-1	chr2	93459321	93460321	+	1000.0	f1_balb.idr	intron (NR_040532, intron 2 of 4)	intron (NR_040532, intron 2 of 4)	2030.0	NM_001271461	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	18.0	50.5	41.5	13.0	42.5	28.0
Merged-chr2-32536998-4	chr2	32536495	32537495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153560, intron 1 of 10)	intron (NM_153560, intron 1 of 10)	1636.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69134458-4	chr11	69133966	69134966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011786, exon 10 of 15)	exon (NM_011786, exon 10 of 15)	8089.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	14.0	19.5	25.0	34.0	55.5	28.0
Merged-chr10-24629471-2	chr10	24628971	24629971	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34029.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38434851-4	chr6	38434364	38435364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177185, intron 1 of 16)	CpG	939.0	NM_177185	320538.0	Mm.302831	NM_177185	ENSMUSG00000038538	Ubn2	2900060J04Rik|6030408G03Rik|BC060116|D130059P03Rik|mKIAA2030	ubinuclein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-23434418-6	chr5	23433902	23434902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026984)	promoter-TSS (NM_026984)	-27.0	NM_026984	69188.0	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	82.5	224.0	136.0	45.0	178.5	132.0
Merged-chr10-127621802-4	chr10	127621330	127622330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008512)	promoter-TSS (NM_008512)	-682.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	36.0	73.5	47.5	36.0	69.5	48.0
Merged-chr13-89378569-3	chr13	89378069	89379069	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-162067.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	0.0	2.0	3.5	1.0	0.0	2.0
Merged-chr6-91440882-4	chr6	91440367	91441367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045980)	promoter-TSS (NR_045980)	-13.0	NR_045980	75787.0	Mm.30842	NR_045980	ENSMUSG00000097693	4930471M09Rik	4930427C17Rik	RIKEN cDNA 4930471M09 gene	ncRNA	25.5	69.5	41.5	22.0	55.5	38.0
Merged-chr19-21652214-2	chr19	21651714	21652714	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025423, intron 1 of 3)	intron (NM_025423, intron 1 of 3)	577.0	NM_025423	66206.0	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52941787-4	chr2	52941268	52942268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	83900.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62663578-4	chr4	62663057	62664057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134257, intron 10 of 15)	intron (NM_134257, intron 10 of 15)	-10417.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84188442-4	chr12	84187921	84188921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	5594.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54787082-4	chr11	54786557	54787557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178626, intron 1 of 5)	CpG	646.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73325953-6	chr14	73325442	73326442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009029)	promoter-TSS (NM_009029)	-120.0	NM_009029	19645.0	Mm.273862	NM_009029	ENSMUSG00000022105	Rb1	Rb|Rb-1|pRb|pp105	RB transcriptional corepressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121476912-3	chr10	121476404	121477404	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138956)	promoter-TSS (NM_138956)	-654.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	44.5	117.5	31.0	101.0	232.5	137.0
Merged-chr9-60741949-2	chr9	60741449	60742449	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28828.0	NM_026235	67557.0	Mm.44546	NM_026235	ENSMUSG00000034839	Larp6	5430431G03Rik|AI552438|Achn	La ribonucleoprotein domain family, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103306174-2	chr15	103305674	103306674	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	4264.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157566250-4	chr2	157565742	157566742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355426, exon 1 of 2)	5' UTR (NM_001355426, exon 1 of 2)	119.0	NM_001355426	53619.0	Mm.480461	NM_016916	ENSMUSG00000067787	Blcap	AI462828|Bc10	bladder cancer associated protein	protein-coding	34.5	77.5	60.0	30.0	107.5	57.5
Merged-chr10-118081682-4	chr10	118081168	118082168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-60119.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	139.0	279.5	201.0	143.5	260.5	189.0
Merged-chr7-80390053-2	chr7	80389552	80390552	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081454, exon 16 of 16)	3' UTR (NM_001081454, exon 16 of 16)	-2106.0	NM_010194	14159.0	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	5.5	8.0	5.5	8.5	8.5	5.5
Merged-chr10-8859296-2	chr10	8858796	8859796	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	26774.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	32.5	46.5	43.5	40.5	62.0	43.0
Merged-chr6-34938587-4	chr6	34938079	34939079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009292, intron 8 of 8)	intron (NM_009292, intron 8 of 8)	17631.0	NM_009292	20899.0	Mm.5171	NM_009292	ENSMUSG00000029848	Stra8	-	stimulated by retinoic acid gene 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71570506-4	chr8	71570014	71571014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357182)	promoter-TSS (NM_001357182)	-80.0	NM_001357182	26457.0	Mm.38165	NM_011977	ENSMUSG00000031808	Slc27a1	FATP1|Fatp	solute carrier family 27 (fatty acid transporter), member 1	protein-coding	33.0	48.0	63.5	20.0	47.5	42.5
Merged-chr17-8902176-4	chr17	8901695	8902695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347321, intron 2 of 21)	ORR1D2|LTR|ERVL-MaLR	52210.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170184783-4	chr2	170184275	170185275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42100.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-72366701-4	chr2	72366179	72367179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 4 of 19)	intron (NM_023057, intron 4 of 19)	80978.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125390148-4	chr5	125389656	125390656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019639)	promoter-TSS (NM_019639)	-139.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	109.0	175.5	163.5	92.0	158.0	98.5
Merged-chr6-31385780-4	chr6	31385279	31386279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040300, intron 2 of 2)	intron (NR_040300, intron 2 of 2)	12994.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9647464-4	chr4	9646975	9647975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	-3758.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	14.0	43.5	16.5	3.5	9.0	12.0
Merged-chr3-89102044-4	chr3	89101541	89102541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134469)	promoter-TSS (NM_134469)	-74.0	NM_001253751	110196.0	Mm.39472	NM_134469	ENSMUSG00000059743	Fdps	6030492I17Rik|AI256750|Fdpsl1|mKIAA1293	farnesyl diphosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62793007-2	chr10	62792507	62793507	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026201)	promoter-TSS (NM_026201)	-639.0	NM_026201	67500.0	Mm.196371	NM_026201	ENSMUSG00000020074	Ccar1	2610511G16Rik|9430036H15Rik|Carp1	cell division cycle and apoptosis regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-65788346-4	chr11	65787858	65788858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009157)	promoter-TSS (NM_009157)	1.0	NM_009157	26398.0	Mm.412922	NM_009157	ENSMUSG00000033352	Map2k4	JNKK1|MEK4|MKK4|PRKMK4|Sek1|Serk1	mitogen-activated protein kinase kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23609065-2	chr16	23608565	23609565	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023386)	promoter-TSS (NM_023386)	-854.0	NM_023386	67775.0	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31573129-4	chr14	31572636	31573636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009937, intron 1 of 16)	intron (NM_009937, intron 1 of 16)	4247.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100557764-2	chr5	100557264	100558264	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139198, intron 3 of 4)	intron (NM_139198, intron 3 of 4)	14441.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	8.5	4.5	13.5	1.0	0.0	5.5
Merged-chr6-29270676-2	chr6	29270176	29271176	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1812.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142095356-4	chr7	142094864	142095864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008748)	promoter-TSS (NM_008748)	-80.0	NM_008748	18218.0	Mm.39725	NM_008748	ENSMUSG00000037887	Dusp8	5530400B01Rik|AI593498|Nttp1	dual specificity phosphatase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-107100486-4	chr8	107099960	107100960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-3915.0	NR_104410	21750.0	Mm.6402	NM_009353	ENSMUSG00000031921	Terf2	TRF2	telomeric repeat binding factor 2	protein-coding	0.5	1.0	3.5	0.5	1.0	2.0
Merged-chr17-35195876-4	chr17	35195366	35196366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_105939)	TTS (NR_105939)	894.0	NR_105939	102465588.0		NR_105939	ENSMUSG00000098291	Mir6973a	Gm27967|mmu-mir-6973a	microRNA 6973a	ncRNA	4.0	9.5	9.0	47.5	123.0	88.0
Merged-chr9-57075356-4	chr9	57074868	57075868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152107, exon 2 of 2)	non-coding (NR_152107, exon 2 of 2)	681.0	NR_152107	72588.0	Mm.70350	NR_152107		2700012I20Rik	-	RIKEN cDNA 2700012I20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91156717-4	chr6	91156190	91157190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144919)	promoter-TSS (NM_144919)	-125.0	NM_144919	232232.0	Mm.206218	NM_144919	ENSMUSG00000034245	Hdac11	-	histone deacetylase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-12300948-2	chr12	12300448	12301448	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	38809.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95929191-4	chr3	95928695	95929695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253758)	promoter-TSS (NM_001253758)	-62.0	NM_001253758	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126502518-4	chr7	126502016	126503016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347658)	promoter-TSS (NM_001347658)	-91.0	NM_001347658	233871.0	Mm.231450	NM_183020	ENSMUSG00000032637	Atxn2l	A2D|A2LG|A2RP|A2lp|Atxnl2	ataxin 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12461086-4	chr19	12460600	12461600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010821, exon 2 of 2)	5' UTR (NM_010821, exon 2 of 2)	321.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	90.0	178.0	92.5	77.0	158.0	100.5
Merged-chr15-53556304-4	chr15	53555800	53556800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	57979.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-15710285-4	chr9	15709794	15710794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172289, intron 1 of 10)	intron (NM_172289, intron 1 of 10)	556.0	NM_172289	234967.0	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72271095-1	chr8	72270595	72271595	+	1000.0	f1_balb.idr	Intergenic	Intergenic	31077.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	4.0	6.5	0.0	0.5	5.0	0.5
Merged-chr5-86066739-4	chr5	86066235	86067235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1152.0	NM_007683	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	17.5	47.5	24.0	39.0	67.5	33.5
Merged-chr16-24891694-4	chr16	24891251	24892251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-167888.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34934415-2	chr17	34933915	34934915	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010893, exon 5 of 6)	exon (NM_010893, exon 5 of 6)	3162.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44380715-4	chr10	44380239	44381239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21063.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-94512461-4	chr9	94511977	94512977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25604.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	38.0	47.5	37.5	48.5	47.5	28.0
Merged-chr19-32277009-4	chr19	32276488	32277488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168525, intron 2 of 9)	intron (NM_001168525, intron 2 of 9)	-65975.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-54914650-4	chr1	54914151	54915151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	11736.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25108940-4	chr8	25108455	25109455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155282, intron 1 of 1)	intron (NR_155282, intron 1 of 1)	6776.0	NR_155282	74744.0	Mm.117802	NR_155282		5830408C22Rik	2700026D01Rik	RIKEN cDNA 5830408C22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112840366-4	chr12	112839889	112840889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10868.0	NM_001359234	71963.0	Mm.313185	NM_028023	ENSMUSG00000047832	Cdca4	2410018C03Rik|HEPP|SEI-3	cell division cycle associated 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-5374738-2	chr12	5374238	5375238	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164493, intron 1 of 13)	CpG	944.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134582701-4	chr5	134582216	134583216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020022)	promoter-TSS (NM_020022)	26.0	NM_020022	19718.0	Mm.332739	NM_020022	ENSMUSG00000023104	Rfc2	2610008M13Rik|40kDa|AI326953|Recc2	replication factor C (activator 1) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137032857-4	chr5	137032367	137033367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001039385, exon 2 of 2)	3' UTR (NM_001039385, exon 2 of 2)	2572.0	NM_001039385	381677.0	Mm.389697	NM_001039385	ENSMUSG00000037428	Vgf	Gm1052	VGF nerve growth factor inducible	protein-coding	6.0	6.5	13.0	8.5	5.0	8.0
Merged-chr19-6304936-4	chr19	6304463	6305463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1494.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6106464-4	chr17	6105965	6106965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001103181)	promoter-TSS (NM_001103181)	-365.0	NM_001103181	68842.0	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	28.0	56.0	47.0	12.5	25.0	26.0
Merged-chr3-89520085-4	chr3	89519568	89520568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080466)	promoter-TSS (NM_080466)	-96.0	NM_080466	140493.0	Mm.120250	NM_080466	ENSMUSG00000000794	Kcnn3	KCa2.3|SK3|SKCA3	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181291166-4	chr2	181290622	181291622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-3156.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19276979-4	chr7	19276477	19277477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177691, exon 5 of 5)	3' UTR (NM_177691, exon 5 of 5)	3072.0	NM_177691	232941.0	Mm.134068	NM_177691	ENSMUSG00000030402	Ppm1n	A930002H20|C79127	protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55724570-4	chr14	55724093	55725093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2330.0	NM_001360387	56187.0	Mm.87216	NM_019519	ENSMUSG00000040472	Rabggta	gm	Rab geranylgeranyl transferase, a subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119131312-1	chr4	119130812	119131812	+	1000.0	f0_balb.idr	intron (NM_011400, intron 2 of 9)	intron (NM_011400, intron 2 of 9)	22567.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	5.5	2.5	2.5	0.0	6.5	1.5
Merged-chr6-50385686-4	chr6	50385182	50386182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163645, intron 2 of 21)	intron (NM_001163645, intron 2 of 21)	-2845.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64078551-4	chr1	64078050	64079050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033563, intron 2 of 3)	intron (NM_033563, intron 2 of 3)	-36049.0	NR_105864	102466760.0		NR_105864	ENSMUSG00000098487	Mir6899	Gm27384|mmu-mir-6899	microRNA 6899	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-57995984-4	chr1	57995478	57996478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199007)	promoter-TSS (NM_199007)	4.0	NM_199007	68549.0	Mm.32800	NM_199007	ENSMUSG00000026039	Sgo2a	1110007N04Rik|4932411A20Rik|5730576N04Rik|AU018846|AV008062|D1Ertd8e|Sgol2|Sgol2a|Tripin	shugoshin 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172376442-4	chr1	172375926	172376926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026234)	promoter-TSS (NM_026234)	-105.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	67.0	178.0	159.5	71.0	125.0	76.0
Merged-chr2-166906412-4	chr2	166905907	166906907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023565, intron 1 of 24)	CpG	311.0	NM_023565	110750.0	Mm.22417	NM_023565	ENSMUSG00000002718	Cse1l	2610100P18Rik|AA407533|Capts|Cas|Xpo2	chromosome segregation 1-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81142719-2	chr10	81142219	81143219	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010731, intron 1 of 2)	intron (NM_010731, intron 1 of 2)	6448.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116335446-4	chr11	116334939	116335939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008240)	promoter-TSS (NM_008240)	-85.0	NM_008240	15223.0	Mm.378938	NM_008240	ENSMUSG00000034227	Foxj1	FKHL-13|HFH-4|Hfh4	forkhead box J1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68655742-4	chr11	68655260	68656260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36155.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44515379-6	chr9	44514865	44515865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007551, intron 1 of 1)	intron (NM_007551, intron 1 of 1)	11056.0	NM_007551	12145.0	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	2.5	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11989517-4	chr19	11989019	11990019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033174, intron 11 of 13)	intron (NM_001033174, intron 11 of 13)	23675.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	21.0	20.0	23.0	16.0	18.0	20.0
Merged-chr15-84996076-4	chr15	84995592	84996592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8121.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56988640-2	chr17	56988140	56989140	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1624.0	NM_017393	53895.0	Mm.287892	NM_017393	ENSMUSG00000002660	Clpp	AU019820|D17Wsu160e	caseinolytic mitochondrial matrix peptidase proteolytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-14013501-1	chr14	14013001	14014001	+	1000.0	f0_c57.idr	intron (NM_139227, intron 2 of 11)	CpG	1010.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-28929348-4	chr6	28928862	28929862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93257.0	NR_029567	387237.0		NR_029567	ENSMUSG00000065469	Mir129-1	Mirn129-1|Mirn129b|miR-129b|mir-129-1	microRNA 129-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128491400-4	chr8	128490898	128491898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358959, intron 12 of 16)	intron (NM_001358959, intron 12 of 16)	132157.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	48.5	139.5	94.5	43.5	83.0	70.0
Merged-chr8-125286416-4	chr8	125285936	125286936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	206397.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	60.0	219.0	150.0	26.0	85.5	46.0
Merged-chr6-85961856-7	chr6	85961343	85962343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028099)	promoter-TSS (NM_028099)	-176.0	NM_028099	72102.0	Mm.24007	NM_028099	ENSMUSG00000030002	Dusp11	2010300F21Rik|AI481497	dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11270814-4	chr16	11270299	11271299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-16354.0	NR_035466	100316833.0		NR_035466	ENSMUSG00000088544	Mir1945	mir-1945|mmu-mir-1945	microRNA 1945	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100744626-4	chr13	100744137	100745137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190264)	promoter-TSS (NM_001190264)	22.0	NM_001190264	66128.0	Mm.306173	NM_025369	ENSMUSG00000061474	Mrps36	1110018B13Rik|S36mt	mitochondrial ribosomal protein S36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121461621-4	chr10	121461075	121462075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	14675.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	132.5	255.0	193.0	152.0	417.0	342.0
Merged-chr3-81041151-4	chr3	81040645	81041645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	Tigger15a|DNA|TcMar-Tigger	4729.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91193358-2	chr2	91192858	91193858	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355279, intron 2 of 9)	intron (NM_001355279, intron 2 of 9)	1677.0	NM_013839	22259.0	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	5.5	25.0	23.5	1.5	5.0	5.5
Merged-chr17-23654174-2	chr17	23653674	23654674	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6332.0	NM_153784	212733.0	Mm.59997	NM_153784	ENSMUSG00000043782	Bicdl2	BICDR-2|Ccdc64b	BICD family like cargo adaptor 2	protein-coding	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr6-125147010-4	chr6	125146513	125147513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039669, intron 1 of 9)	intron (NM_001039669, intron 1 of 9)	1789.0	NM_001302779	320678.0	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	43.5	91.5	48.0	45.5	83.0	50.5
Merged-chr16-14135240-4	chr16	14134722	14135722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081154, intron 13 of 26)	ORR1B2|LTR|ERVL-MaLR	24052.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127674946-4	chr10	127674382	127675382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2183.0	NM_173732	210035.0	Mm.251075	NM_173732	ENSMUSG00000040195	Nemp1	Tmem194|Tmem194a	nuclear envelope integral membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126412735-4	chr4	126412236	126413236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153402, intron 2 of 18)	RMER19B|LTR|ERVK	16806.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180944798-4	chr1	180944319	180945319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144794, intron 1 of 22)	intron (NM_144794, intron 1 of 22)	2301.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25379107-4	chr14	25378609	25379609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80076.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105055135-4	chr3	105054627	105055627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1981.0	NM_030249	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-22752707-4	chr2	22752203	22753203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21624.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85523928-4	chr12	85523425	85524425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50035.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108567465-4	chr9	108566956	108567956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023247)	promoter-TSS (NM_023247)	-114.0	NM_023247	66706.0	Mm.29471	NM_023247	ENSMUSG00000070283	Ndufaf3	4733401H18Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3	protein-coding	13.5	26.5	17.5	18.5	50.0	30.5
Merged-chr17-53479174-4	chr17	53478708	53479708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025887)	promoter-TSS (NM_025887)	-26.0	NM_025887	271457.0	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105623034-4	chr5	105622578	105623578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76891.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-71103086-4	chr1	71102588	71103588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007525)	promoter-TSS (NM_007525)	-116.0	NM_007525	12021.0	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	-	BRCA1 associated RING domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29486737-4	chr19	29486228	29487228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35259.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-26601977-4	chr11	26601456	26602456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER34A|LTR|ERV1	-8036.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	19.0	27.5	51.5	9.0	35.0	50.5
Merged-chr4-99120983-4	chr4	99120501	99121501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290636)	promoter-TSS (NM_001290636)	-86.0	NM_026082	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	28.0	37.5	38.5	30.5	42.5	43.0
Merged-chr1-118567844-4	chr1	118567336	118568336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359330, intron 33 of 39)	intron (NM_001359330, intron 33 of 39)	-60109.0	NM_023755	81879.0	Mm.24621	NM_023755	ENSMUSG00000026380	Tfcp2l1	1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1	transcription factor CP2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28762086-4	chr17	28761581	28762581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7236.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91061764-4	chr16	91061270	91062270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028905, intron 1 of 2)	intron (NM_028905, intron 1 of 2)	7375.0	NM_001163695	74387.0	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-123329408-4	chr3	123328911	123329911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027135, intron 9 of 22)	intron (NM_027135, intron 9 of 22)	56579.0	NM_201638	210529.0	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding	45.0	38.5	44.5	16.5	30.5	7.0
Merged-chr12-84751454-4	chr12	84750946	84751946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	21666.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90213703-4	chr3	90213206	90214206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027015)	promoter-TSS (NM_027015)	-9.0	NM_001293741	68328.0	Mm.29355	NM_026677	ENSMUSG00000027935	Rab13	0610007N03Rik|B230212B15Rik	RAB13, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-40755340-4	chr11	40754828	40755828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009831)	promoter-TSS (NM_009831)	-42.0	NM_009831	12450.0	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7870694-4	chr9	7870189	7871189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007464, intron 1 of 8)	ORR1C2|LTR|ERVL-MaLR	2481.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-102715425-4	chr3	102714876	102715876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19394.0	NM_027533	70747.0	Mm.27469	NM_027533	ENSMUSG00000027858	Tspan2	6330415F13Rik|B230119D02Rik|tspan-2	tetraspanin 2	protein-coding	0.0	1.5	0.5	0.0	1.5	10.0
Merged-chr12-40551494-4	chr12	40551009	40552009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	105456.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3779109-2	chr4	3778609	3779609	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	56546.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0.0	2.5	6.5	0.0	2.0	4.0
Merged-chr13-20091440-4	chr13	20090973	20091973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	CpG	966.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	67.0	155.0	141.5	47.5	126.5	100.0
Merged-chr8-88137847-4	chr8	88137349	88138349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106039)	promoter-TSS (NR_106039)	-36.0	NM_172757	234549.0	Mm.36291	NM_172757	ENSMUSG00000031657	Heatr3	C030036P15Rik	HEAT repeat containing 3	protein-coding	115.5	175.5	153.5	109.5	132.0	117.5
Merged-chr1-177981516-4	chr1	177981009	177982009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-9889.0	NR_155538	545391.0	Mm.442974	NM_001034899	ENSMUSG00000091476	Gm16432	EG545391|EG666250	predicted gene 16432	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122281966-4	chr8	122281462	122282462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009569)	promoter-TSS (NM_009569)	-179.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	33.0	115.5	63.0	13.5	52.5	49.5
Merged-chr14-55745686-4	chr14	55745185	55746185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026403)	promoter-TSS (NM_026403)	-1.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-53706465-4	chr9	53705969	53706969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175562)	promoter-TSS (NM_175562)	-237.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29549734-4	chr17	29549233	29550233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162901)	promoter-TSS (NM_001162901)	-69.0	NM_198647	381085.0	Mm.328934	NM_198647	ENSMUSG00000042203	Tbc1d22b	BC045600	TBC1 domain family, member 22B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54534053-4	chr11	54533551	54534551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 1 of 28)	RLTR14|LTR|ERV1	11206.0	NM_001252496	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107028083-4	chr11	107027619	107028619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163473)	promoter-TSS (NM_001163473)	-104.0	NM_001163473	69066.0	Mm.40679	NM_001163473	ENSMUSG00000078607	1810010H24Rik	-	RIKEN cDNA 1810010H24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77259206-4	chr10	77258708	77259708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_026944)	promoter-TSS (NR_026944)	15.0	NR_026944	100169878.0	Mm.420901	NR_026944	ENSMUSG00000078444	Gm10941	-	predicted gene 10941	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73496169-4	chr2	73495666	73496666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-10413.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141024929-4	chr7	141024435	141025435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8043.0	NM_001033632	213002.0	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108120850-4	chr9	108120347	108121347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007567, intron 3 of 11)	intron (NM_007567, intron 3 of 11)	-12871.0	NR_126078	76873.0	Mm.436935	NR_126077	ENSMUSG00000102224	4930447F24Rik	-	RIKEN cDNA 4930447F24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121224532-2	chr3	121224032	121225032	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355678, intron 6 of 7)	intron (NM_001355678, intron 6 of 7)	38627.0	NM_001355678	99887.0	Mm.26088	NM_178936	ENSMUSG00000028132	Tmem56	4930577M16Rik|AU018104|AW109744|C730036B01Rik	transmembrane protein 56	protein-coding	0.0	2.5	0.5	0.5	2.0	1.5
Merged-chr15-37961132-4	chr15	37960626	37961626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199476)	promoter-TSS (NM_199476)	-71.0	NM_199476	382985.0	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-101836290-4	chr3	101835808	101836808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172295)	promoter-TSS (NM_172295)	-85.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136899860-1	chr4	136899360	136900360	+	1000.0	f1_balb.idr	Intergenic	RSINE1|SINE|B4	-1016.0	NM_007572	12259.0	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	8.5	21.5	4.5	18.0	19.5	4.5
Merged-chr2-167661719-4	chr2	167661196	167662196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145538)	promoter-TSS (NM_145538)	-152.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61719377-2	chr11	61718877	61719877	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033227, intron 2 of 15)	intron (NM_001033227, intron 2 of 15)	1422.0	NM_001033227	109342.0	Mm.441070	NM_001033227	ENSMUSG00000042371	Slc5a10	C330021F16Rik|SGLT5	solute carrier family 5 (sodium/glucose cotransporter), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53122455-3	chr4	53121946	53122946	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	37449.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	8.0	39.0	28.5	8.0	41.5	30.0
Merged-chr1-180762867-4	chr1	180762353	180763353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	36810.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68939816-4	chr11	68939303	68940303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B3A_MM|LTR|ERVK	-12722.0	NM_145746	252868.0	Mm.76826	NM_145746	ENSMUSG00000032921	Odf4	Oppo1	outer dense fiber of sperm tails 4	protein-coding	21.5	66.0	73.0	10.5	62.5	87.5
Merged-chr5-92042796-4	chr5	92042307	92043307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276315)	promoter-TSS (NM_001276315)	-111.0	NM_001276315	53886.0	Mm.44963	NM_016912	ENSMUSG00000029403	Cdkl2	5330436L21Rik|AI505225|KKIAMRE|Kkm	cyclin-dependent kinase-like 2 (CDC2-related kinase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147894820-4	chr5	147894287	147895287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027872)	promoter-TSS (NM_027872)	28.0	NM_001357002	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	2.5	51.0	50.5	4.5	11.5	25.5
Merged-chr6-72601934-4	chr6	72601426	72602426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026159, intron 3 of 10)	intron (NM_026159, intron 3 of 10)	3298.0	NM_026159	67442.0	Mm.305108	NM_026159	ENSMUSG00000056666	Retsat	0610039N19Rik|C80029|MMT-7|Ppsig	retinol saturase (all trans retinol 13,14 reductase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134762598-4	chr4	134762096	134763096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145554, intron 1 of 8)	intron (NM_145554, intron 1 of 8)	5408.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-52741590-4	chr5	52741083	52742083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025951)	promoter-TSS (NM_025951)	9.0	NM_025951	67073.0	Mm.248647	NM_025951	ENSMUSG00000029186	Pi4k2b	2610042N09Rik|4933409G22Rik	phosphatidylinositol 4-kinase type 2 beta	protein-coding	4.5	15.5	8.5	9.5	19.0	15.5
Merged-chr11-70459837-4	chr11	70459342	70460342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151497, exon 1 of 6)	non-coding (NR_151497, exon 1 of 6)	142.0	NR_151499	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31003436-4	chr17	31002945	31003945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177465, intron 20 of 21)	intron (NM_177465, intron 20 of 21)	48762.0	NM_177465	52020.0	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	16.0	41.0	31.0	4.0	51.5	33.5
Merged-chr2-5036607-4	chr2	5036108	5037108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356487, intron 7 of 13)	intron (NM_001356487, intron 7 of 13)	-23817.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	10.5	49.0	20.0	9.5	31.0	21.5
Merged-chr6-87672283-4	chr6	87671793	87672793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170489)	promoter-TSS (NM_001170489)	-125.0	NM_001170489	72103.0	Mm.31770	NM_024251	ENSMUSG00000030051	Aplf	2010301N04Rik|AI452191	aprataxin and PNKP like factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121412967-2	chr10	121412467	121413467	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_138956, exon 5 of 5)	exon (NM_138956, exon 5 of 5)	47877.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0.0	0.5	7.0	6.0	1.0	0.0
Merged-chr9-95036382-4	chr9	95035836	95036836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 11 of 15)	MTE2a|LTR|ERVL-MaLR	284507.0	NR_106116	102465763.0		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17374560-4	chr17	17374059	17375059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_025934, exon 1 of 10)	5' UTR (NM_025934, exon 1 of 10)	227.0	NM_025934	67045.0	Mm.35117	NM_025934	ENSMUSG00000023852	Riok2	2010110K24Rik|2410085M17Rik	RIO kinase 2	protein-coding	145.5	327.0	292.0	202.0	403.5	425.0
Merged-chr13-60356352-4	chr13	60355882	60356882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150911.0	NR_036449	100503759.0	Mm.38101	NM_177810	ENSMUSG00000050765	Gm5084	A030007L22|EG328264	predicted gene 5084	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63076499-4	chr14	63075953	63076953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21380.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61696567-4	chr14	61696082	61697082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14209.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	20.5	64.0	42.0	30.5	63.0	23.5
Merged-chr15-64100655-4	chr15	64100153	64101153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 25 of 28)	intron (NM_001276461, intron 25 of 28)	-40205.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	16.0	20.0	22.5	20.0	26.0	30.0
Merged-chr4-132491949-4	chr4	132491443	132492443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_144907)	TTS (NM_144907)	18513.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21030405-4	chr5	21029887	21030887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011203, intron 1 of 17)	intron (NM_011203, intron 1 of 17)	4860.0	NM_001356592	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72796477-4	chr5	72795986	72796986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	-43709.0	NM_001122754	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39900771-4	chr1	39900271	39901271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252201)	promoter-TSS (NM_001252201)	-142.0	NM_001252202	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-5194886-6	chr10	5194389	5195389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001079686)	promoter-TSS (NM_001079686)	-182.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34374033-4	chr6	34373533	34374533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10214.0	NM_172398	67861.0	Mm.70371	NM_172398	ENSMUSG00000061758	Akr1b10	2310005E10Rik|Akr1b16	aldo-keto reductase family 1, member B10 (aldose reductase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119289283-4	chr2	119288783	119289783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172269, intron 1 of 4)	intron (NM_172269, intron 1 of 4)	541.0	NM_172269	228545.0	Mm.294761	NM_172269	ENSMUSG00000034216	Vps18	9930024E13Rik	VPS18 CORVET/HOPS core subunit	protein-coding	221.0	532.0	367.5	181.0	427.5	337.0
Merged-chr17-28217816-4	chr17	28217323	28218323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027185, intron 3 of 10)	intron (NM_027185, intron 3 of 10)	10045.0	NM_027185	23853.0	Mm.204731	NM_027185	ENSMUSG00000002257	Def6	2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6	differentially expressed in FDCP 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-36221511-2	chr2	36221011	36222011	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-8915.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31277367-4	chr17	31276861	31277861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025290)	promoter-TSS (NM_025290)	-5.0	NM_025290	22092.0	Mm.12743	NM_025290	ENSMUSG00000024033	Rsph1	MCA|Tsga2	radial spoke head 1 homolog (Chlamydomonas)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107349354-2	chr11	107348854	107349854	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	121366.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	3.5	4.0	4.0	2.0	0.0	0.0
Merged-chr16-34690604-4	chr16	34690127	34691127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172824)	promoter-TSS (NM_172824)	11.0	NM_172824	239839.0	Mm.272045	NM_172824	ENSMUSG00000022833	Ccdc14	G630039H03Rik	coiled-coil domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105047036-4	chr3	105046550	105047550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 1 of 5)	intron (NM_030249, intron 1 of 5)	5903.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43580018-4	chr7	43579513	43580513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357769, intron 1 of 3)	intron (NM_001357769, intron 1 of 3)	427.0	NM_001357769	210105.0	Mm.234422	NM_172482	ENSMUSG00000030469	Zfp719	8030458J18|9430094P17Rik|C630016O21Rik|mszf6	zinc finger protein 719	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8647399-6	chr4	8646898	8647898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-43008.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	31.5	78.5	51.0	20.5	82.5	45.0
Merged-chr15-62392567-4	chr15	62392053	62393053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-173102.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	20.5	32.5	58.0	27.0	82.5	50.0
Merged-chr4-136469781-4	chr4	136469285	136470285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024452)	promoter-TSS (NM_024452)	24.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	90.0	225.0	175.5	104.5	267.0	184.5
Merged-chr13-73603398-2	chr13	73602898	73603898	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146047)	promoter-TSS (NM_146047)	-604.0	NM_146047	218335.0	Mm.30099	NM_146047	ENSMUSG00000021610	Clptm1l	C130052I12Rik|Crr9	CLPTM1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-60528415-4	chr3	60527894	60528894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	27215.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124864076-2	chr6	124863576	124864576	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355257)	promoter-TSS (NM_001355257)	-93.0	NM_001355257	14788.0	Mm.2514	NM_013533	ENSMUSG00000038390	Gpr162	A-2|BC031437|Grca	G protein-coupled receptor 162	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77515853-4	chr10	77515332	77516332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133998)	promoter-TSS (NM_133998)	-19.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-105778607-4	chr7	105778089	105779089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162943, intron 1 of 20)	intron (NM_001162943, intron 1 of 20)	8961.0	NM_001162943	233651.0	Mm.334108	NM_001162943	ENSMUSG00000036862	Dchs1	3110041P15Rik|C130033F22Rik|CDH25|FIB1|Gm165|PCDH16	dachsous cadherin related 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81129127-4	chr10	81128603	81129603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7168.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44772909-4	chr9	44772420	44773420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023831)	promoter-TSS (NM_023831)	-89.0	NM_023831	76568.0	Mm.278597	NM_023831	ENSMUSG00000002031	Ift46	1500035H01Rik|AA408110|AI663846|R75047|c11orf2	intraflagellar transport 46	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52602248-4	chr13	52601729	52602729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 1 of 13)	Tigger17a|DNA|TcMar-Tigger	5347.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153899877-4	chr1	153899377	153900377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106194)	promoter-TSS (NR_106194)	-49.0	NR_106194	102466257.0		NR_106194	ENSMUSG00000099227	Mir8114	Gm27382|mmu-mir-8114	microRNA 8114	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-12923984-4	chr2	12923477	12924477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305436)	promoter-TSS (NM_001305436)	-64.0	NM_008961	19212.0	Mm.229322	NM_008961	ENSMUSG00000026730	Pter	AI790318|Mpr56-1	phosphotriesterase related	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91522698-4	chr16	91522208	91523208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4836.0	NR_105786	102465190.0		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25401728-4	chr14	25401212	25402212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57473.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50997292-4	chr14	50996746	50997746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10505.0	NM_001162863	75019.0	Mm.318775	NM_029145	ENSMUSG00000021872	Rnase10	4930474F22Rik|Rah1	ribonuclease, RNase A family, 10 (non-active)	protein-coding	4.5	17.0	20.0	13.5	25.0	29.5
Merged-chr11-113738102-4	chr11	113737601	113738601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163346, intron 1 of 1)	intron (NM_001163346, intron 1 of 1)	13059.0	NM_020006	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106366521-2	chr11	106366021	106367021	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8305.0	NM_029345	75573.0	Mm.159539	NM_029345	ENSMUSG00000009210	Prr29	2310007L24Rik	proline rich 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-137953359-4	chr3	137952860	137953860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 3 of 8)	intron (NM_011932, intron 3 of 8)	28189.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	34.0	89.0	25.5	30.0	42.0	29.0
Merged-chr10-78352445-4	chr10	78351973	78352973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053014)	promoter-TSS (NM_053014)	-773.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20562455-4	chr13	20561953	20562953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198093, intron 1 of 6)	MIR3|SINE|MIR	89463.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.5	12.5	10.5	1.5	8.5	5.0
Merged-chr4-10952567-4	chr4	10952051	10953051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	55068.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	37.5	53.5	43.0	34.5	62.0	30.5
Merged-chr16-97537959-1	chr16	97537459	97538459	+	1000.0	f1_balb.idr	intron (NM_013606, intron 1 of 13)	intron (NM_013606, intron 1 of 13)	1876.0	NM_013606	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	2.0	2.5	0.5	2.0	3.5	0.5
Merged-chr6-34862629-4	chr6	34862129	34863129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197986)	promoter-TSS (NM_197986)	-517.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-39518684-4	chr7	39518176	39519176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004139, intron 1 of 3)	ID_B1|SINE|B4	910.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	218.5	402.0	309.5	178.0	373.5	278.0
Merged-chr10-34198280-4	chr10	34197770	34198770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	9281.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91855917-4	chr16	91855408	91856408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 23 of 28)	intron (NM_001110275, intron 23 of 28)	75722.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95840126-4	chr10	95839621	95840621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-100542.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61022011-4	chr9	61021511	61022511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	4942.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184735266-4	chr1	184734768	184735768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2775.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	5.5	2.5	4.5	0.0	0.0	1.5
Merged-chr11-70475667-2	chr11	70475167	70476167	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-15683.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51915724-4	chr11	51915216	51916216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51915.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-35583577-4	chr5	35583076	35584076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357020, exon 1 of 19)	5' UTR (NM_001357020, exon 1 of 19)	542.0	NM_030721	80911.0	Mm.291503	NM_030721	ENSMUSG00000029098	Acox3	BI685180|EST-s59|PCOX	acyl-Coenzyme A oxidase 3, pristanoyl	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41801518-3	chr13	41801021	41802021	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145875, intron 4 of 6)	intron (NM_001145875, intron 4 of 6)	45967.0	NM_175417	109254.0	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136123219-4	chr4	136122741	136123741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20581.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	29.0	86.0	54.5	20.5	53.0	44.0
Merged-chr11-96075846-4	chr11	96075361	96076361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161419)	promoter-TSS (NM_001161419)	-167.0	NM_007506	11951.0	Mm.258	NM_007506	ENSMUSG00000006057	Atp5g1	-	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9)	protein-coding	24.5	69.0	35.5	15.5	51.0	38.5
Merged-chr17-12158788-2	chr17	12158288	12159288	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026644, intron 2 of 8)	intron (NM_026644, intron 2 of 8)	39504.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	0.0	0.0	0.5	1.5	0.0	2.5
Merged-chr4-128925157-4	chr4	128924657	128925657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	37298.0	NM_172875	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-166409840-4	chr1	166409340	166410340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142948)	promoter-TSS (NM_001142948)	-12.0	NM_175170	71592.0	Mm.192094	NM_175170	ENSMUSG00000040596	Pogk	9130401E23Rik|BASS2|mKIAA1513	pogo transposable element with KRAB domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110525910-4	chr9	110525417	110526417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010628)	TTS (NM_010628)	-6680.0	NM_001081340	235626.0	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191259314-4	chr1	191258801	191259801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	34847.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	1.5	7.5	3.5	4.0	13.0	0.5
Merged-chr1-172311485-6	chr1	172311024	172312024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080419)	promoter-TSS (NM_080419)	-843.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	65.0	196.5	98.5	113.5	193.5	114.5
Merged-chr4-135203420-4	chr4	135202928	135203928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69332.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52035937-4	chr13	52035433	52036433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60808.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59227002-4	chr11	59226511	59227511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007476, intron 1 of 4)	intron (NM_007476, intron 1 of 4)	1151.0	NM_001130408	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50930476-4	chr14	50930023	50931023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310507, intron 1 of 5)	CpG	326.0	NM_001310506	219024.0	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161|Pip4p1	transmembrane protein 55b	protein-coding	92.5	239.5	198.0	103.0	229.0	196.5
Merged-chr3-154692485-2	chr3	154691985	154692985	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18648.0	NM_175176	209601.0	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding	11.0	10.5	6.5	0.0	0.0	0.0
Merged-chr13-94788983-4	chr13	94788515	94789515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009321)	promoter-TSS (NM_009321)	72.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70562000-3	chr8	70561505	70562505	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	22330.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	4.5	0.0	0.0	18.0	0.0	10.0
Merged-chr7-116446886-4	chr7	116446377	116447377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3419.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-65644042-2	chr7	65643542	65644542	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172310)	promoter-TSS (NM_172310)	-856.0	NM_172310	272396.0	Mm.35127	NM_172310	ENSMUSG00000030515	Tarsl2	A530046H20Rik	threonyl-tRNA synthetase-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-37165417-4	chr14	37164906	37165906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30084.0	NM_078478	66092.0	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-22421045-2	chr4	22420545	22421545	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172988, intron 6 of 8)	intron (NM_172988, intron 6 of 8)	63502.0	NR_104380	269514.0	Mm.40708	NM_172988	ENSMUSG00000040410	Fbxl4	AI836810|FBL4|FBL5	F-box and leucine-rich repeat protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74295164-7	chr17	74294654	74295654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133771)	promoter-TSS (NM_133771)	-291.0	NM_133771	76890.0	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7571734-4	chr9	7571232	7572232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310717, intron 1 of 9)	intron (NM_001310717, intron 1 of 9)	336.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71537539-4	chr8	71537040	71538040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198095)	promoter-TSS (NM_198095)	-103.0	NM_198095	69550.0	Mm.260325	NM_198095	ENSMUSG00000046718	Bst2	2310015I10Rik|Bst-2|C87040|CD317|DAMP-1|GREG	bone marrow stromal cell antigen 2	protein-coding	34.0	35.0	38.0	22.5	40.5	36.0
Merged-chr16-55698725-4	chr16	55698206	55699206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	123432.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51068869-2	chr14	51068369	51069369	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2573.0	NM_207558	404319.0	Mm.377276	NM_207558	ENSMUSG00000035932	Olfr750	GA_x5J8B7W5WBF-6267395-6266441|GA_x6K02T2PMLR-6808276-6807281|MOR103-18	olfactory receptor 750	protein-coding	7.5	1.5	0.0	0.0	2.0	0.0
Merged-chr1-180250263-4	chr1	180249750	180250750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128605, intron 1 of 10)	intron (NM_001128605, intron 1 of 10)	-4300.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3333485-2	chr2	3332985	3333985	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013376)	promoter-TSS (NM_001013376)	-857.0	NM_001013376	227522.0	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69721935-4	chr3	69721422	69722422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133787)	promoter-TSS (NM_133787)	-133.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75195738-4	chr14	75195234	75196234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	-46553.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136685487-4	chr1	136685005	136686005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045325, intron 1 of 2)	intron (NR_045325, intron 1 of 2)	1876.0	NR_045325	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-63498691-4	chr15	63498167	63499167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19059.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93750680-4	chr16	93750157	93751157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357118, intron 6 of 35)	intron (NM_001357118, intron 6 of 35)	20558.0	NM_001357118	70028.0	Mm.23230	NM_026700	ENSMUSG00000022946	Dopey2	0610038M01Rik|2610510B01Rik|AI503246|C21orf5|mKIAA0933	dopey family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32693993-3	chr12	32693476	32694476	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR33|LTR|ERVK	-126359.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112947545-2	chr12	112947045	112948045	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5403.0	NM_001316724	66174.0	Mm.7070	NM_025399	ENSMUSG00000002804	Nudt14	1110030M18Rik|UGPPase	nudix (nucleoside diphosphate linked moiety X)-type motif 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141871166-4	chr4	141870655	141871655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	3765.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	188.5	638.5	412.5	121.5	414.0	277.5
Merged-chr6-122598617-4	chr6	122598116	122599116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134391, intron 2 of 7)	RLTR14|LTR|ERV1	3828.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	46.5	174.5	81.5	58.5	141.5	82.0
Merged-chr10-4431862-1	chr10	4431362	4432362	+	1000.0	f1_balb.idr	promoter-TSS (NM_024261)	promoter-TSS (NM_024261)	526.0	NM_025343	66084.0	Mm.153111	NM_025343	ENSMUSG00000019763	Rmnd1	0610042C05Rik|AA408137|AI462664|AW536662	required for meiotic nuclear division 1 homolog	protein-coding	44.5	62.0	48.5	52.5	87.0	71.5
Merged-chr14-103978985-4	chr14	103978453	103979453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045953, exon 3 of 3)	non-coding (NR_045953, exon 3 of 3)	48189.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104262397-1	chr9	104261897	104262897	+	1000.0	f0_balb.idr	intron (NM_001359740, intron 1 of 56)	CpG	533.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25527488-3	chr14	25526988	25527988	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 2 of 23)	intron (NM_183208, intron 2 of 23)	-6951.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59617221-4	chr9	59616721	59617721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038075)	promoter-TSS (NR_038075)	-63.0	NR_038075	67287.0	Mm.439943	NM_029922	ENSMUSG00000025237	Parp6	1700119G14Rik|2310028P13Rik|3110038K10Rik|ARTD17|C030013N01Rik|PARP-6	poly (ADP-ribose) polymerase family, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80075483-4	chr10	80075005	80076005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359636)	promoter-TSS (NM_001359636)	-66.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118611316-4	chr9	118610801	118611801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	4592.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58904233-4	chr11	58903749	58904749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011758)	promoter-TSS (NM_011758)	-24.0	NM_011758	22698.0	Mm.127646	NM_011758	ENSMUSG00000037001	Zfp39	CTfin33|Zfp-39	zinc finger protein 39	protein-coding	72.5	158.5	139.5	72.0	142.5	149.0
Merged-chr8-119437053-4	chr8	119436547	119437547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027950)	promoter-TSS (NM_027950)	-115.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-88705474-4	chr9	88705001	88706001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359992, intron 2 of 2)	intron (NM_001359992, intron 2 of 2)	14086.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	8.0	14.0	8.5	15.0	13.5	17.5
Merged-chr6-5362212-4	chr6	5361711	5362711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21175.0	NM_023048	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	13.0	27.5	37.5	8.5	20.5	25.5
Merged-chr14-31569376-4	chr14	31568901	31569901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009937, intron 1 of 16)	intron (NM_009937, intron 1 of 16)	7982.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-13574083-9	chr2	13573624	13574624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011701)	promoter-TSS (NM_011701)	-187.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38346969-4	chr16	38346479	38347479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001017429)	promoter-TSS (NM_001017429)	-20.0	NM_001017429	12856.0	Mm.27396	NM_001017429	ENSMUSG00000046516	Cox17	AI037035	cytochrome c oxidase assembly protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34012180-4	chr11	34011664	34012664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-18971.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83350809-4	chr17	83350305	83351305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286567)	promoter-TSS (NM_001286567)	-126.0	NM_001114361	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-19898206-4	chr4	19897715	19898715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175406, intron 2 of 7)	intron (NM_175406, intron 2 of 7)	24351.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-159187025-4	chr1	159186528	159187528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45172.0	NM_001360878	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	9.0	13.0	30.5	23.5	25.0	21.5
Merged-chr11-51263044-4	chr11	51262528	51263528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007714)	promoter-TSS (NM_007714)	29.0	NM_001358282	193286.0	Mm.80975	NM_177567	ENSMUSG00000045942	BC049762	4930503F14	cDNA sequence BC049762	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43512251-4	chr19	43511747	43512747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010324, intron 2 of 8)	B3|SINE|B2	12358.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	188.5	453.5	272.5	268.5	630.5	514.0
Merged-chr5-105700631-4	chr5	105700121	105701121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178701)	promoter-TSS (NM_178701)	-189.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	106.0	311.5	177.5	122.5	349.5	228.5
Merged-chr12-81971976-4	chr12	81971473	81972473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018814, intron 20 of 35)	intron (NM_018814, intron 20 of 35)	111943.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114292711-4	chr7	114292200	114293200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16584.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	12.0	24.0	18.5	17.5	34.0	23.5
Merged-chr2-154792655-1	chr2	154792155	154793155	+	1000.0	f1_balb.idr	intron (NM_001139513, intron 1 of 8)	intron (NM_001139513, intron 1 of 8)	1545.0	NM_001139511	19383.0	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	1.5	0.0	2.5	3.0	7.0	3.0
Merged-chr1-156553703-1	chr1	156553203	156554203	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-5084.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	14.5	1.5	3.5	6.5	19.0	4.0
Merged-chr7-16259274-4	chr7	16258727	16259727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007577, exon 2 of 3)	5' UTR (NM_007577, exon 2 of 3)	111.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	70.5	185.0	89.5	77.0	176.5	101.5
Merged-chr13-94382241-4	chr13	94381749	94382749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009680, intron 1 of 26)	intron (NM_009680, intron 1 of 26)	23289.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38975037-4	chr6	38974529	38975529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	intron (NM_011539, intron 3 of 12)	56043.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46438696-2	chr11	46438196	46439196	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001104556, intron 1 of 1)	intron (NM_001104556, intron 1 of 1)	1735.0	NM_025426	66213.0	Mm.24159	NM_025426	ENSMUSG00000020397	Med7	1110063B05Rik|Crsp33|Crsp9	mediator complex subunit 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24641931-4	chr10	24641441	24642441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008813, exon 25 of 25)	exon (NM_008813, exon 25 of 25)	46499.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55747371-4	chr16	55746880	55747880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74758.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75571409-4	chr11	75570924	75571924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 12 of 13)	intron (NM_001199284, intron 12 of 13)	-16655.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	51.0	129.5	62.5	42.0	128.0	65.0
Merged-chr10-19170807-4	chr10	19170302	19171302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038022, intron 1 of 1)	intron (NR_038022, intron 1 of 1)	3564.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62980250-4	chr10	62979761	62980761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027425)	promoter-TSS (NM_027425)	38.0	NM_027425	70432.0	Mm.234587	NM_027425	ENSMUSG00000020070	Rufy2	2610111M19Rik|AI844453|Denn|LZ-FYVE|ZFYVE13	RUN and FYVE domain-containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171851719-4	chr1	171851224	171852224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289470, intron 2 of 8)	intron (NM_001289470, intron 2 of 8)	12027.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	26.0	40.5	30.0	13.0	43.0	31.5
Merged-chr8-70646580-2	chr8	70646080	70647080	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023217, exon 5 of 5)	3' UTR (NM_023217, exon 5 of 5)	13158.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	41.0	76.5	64.5	1.0	12.5	4.0
Merged-chr8-13676589-4	chr8	13676072	13677072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	1015.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123713974-4	chr5	123713472	123714472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027494, intron 5 of 13)	intron (NM_027494, intron 5 of 13)	7072.0	NM_027494	70650.0	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	5.0	3.0	10.5	4.0	15.5	9.5
Merged-chr18-80715504-4	chr18	80714998	80715998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2427.0	NM_001164110	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-93511033-4	chr4	93510527	93511527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-175516.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	0.5	1.5	0.0	0.5	2.0	5.5
Merged-chr8-95037499-2	chr8	95036999	95037999	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173036, intron 8 of 11)	L1MC4a|LINE|L1	-17604.0	NM_001042715	330830.0	Mm.277112	NM_001042715	ENSMUSG00000031786	Drc7	Ccdc135|Gm770|SRG-L|SRG-S	dynein regulatory complex subunit 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121397943-4	chr5	121397492	121398492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172722)	promoter-TSS (NM_172722)	10.0	NM_172722	231713.0	Mm.33919	NM_172722	ENSMUSG00000042719	Naa25	4833422K13Rik|A630046C11|AI450868|C330023M02Rik|Mdm20	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding	13.5	28.0	33.0	10.5	29.0	12.5
Merged-chr17-25844568-4	chr17	25844074	25845074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163766)	TTS (NM_001163766)	277.0	NM_145999	214952.0	Mm.40907	NM_145999	ENSMUSG00000025733	Rhot2	Arht2|Miro2	ras homolog family member T2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105151013-4	chr5	105150517	105151517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11431.0	NM_001359080	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56079291-5	chr17	56078847	56079847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304785)	promoter-TSS (NM_001304785)	-14.0	NM_024432	66530.0	Mm.28000	NM_024432	ENSMUSG00000019578	Ubxn6	1200008L11Rik|2210415J11Rik|AU040909|Ubxd1|Ubxdc2	UBX domain protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43641834-2	chr7	43641334	43642334	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028236, exon 4 of 6)	exon (NM_028236, exon 4 of 6)	7095.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-39594936-4	chr8	39594445	39595445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113326, intron 8 of 9)	intron (NM_001113326, intron 8 of 9)	47733.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	41.0	60.5	39.0	20.0	36.5	25.5
Merged-chr13-44419270-4	chr13	44418768	44419768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20459.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	27.0	43.5	24.0	35.5	49.0	42.5
Merged-chr7-126702530-4	chr7	126702033	126703033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301374, intron 2 of 10)	intron (NM_001301374, intron 2 of 10)	1687.0	NM_001301374	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191085748-4	chr1	191085250	191086250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12664.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	175.5	429.5	279.5	158.5	506.5	330.5
Merged-chr11-84555025-4	chr11	84554524	84555524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	29364.0	NR_038057	78365.0	Mm.260345	NR_038057	ENSMUSG00000087211	Lhx1os	1500016L03Rik|Lhx1as	LIM homeobox 1, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-57890400-4	chr14	57889887	57890887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360097)	promoter-TSS (NM_001360097)	-51.0	NM_001360097	75965.0	Mm.29044	NM_029492	ENSMUSG00000021969	Zdhhc20	4930542A17Rik|5033406L14Rik|AI448102|B230110O18Rik|HK11	zinc finger, DHHC domain containing 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114130822-4	chr5	114130327	114131327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011677)	promoter-TSS (NM_011677)	-329.0	NM_011677	22256.0	Mm.1393	NM_011677	ENSMUSG00000029591	Ung	UNG1|UNG2	uracil DNA glycosylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6942505-4	chr19	6942005	6943005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285453)	promoter-TSS (NM_001285453)	-55.0	NM_001177361	107173.0	Mm.276555	NM_207220	ENSMUSG00000024958	Gpr137	AI428855	G protein-coupled receptor 137	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-109752273-4	chr7	109751801	109752801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020050)	promoter-TSS (NM_020050)	-38.0	NM_020050	56786.0	Mm.240668	NM_020050	ENSMUSG00000031021	Tmem9b	2310004K06Rik|AW539847|D7H11orf15|ICRFP703B1614Q5.3	TMEM9 domain family, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-3714910-4	chr16	3714424	3715424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019453, intron 2 of 9)	intron (NM_019453, intron 2 of 9)	3200.0	NM_001161790	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76498323-2	chr11	76497823	76498823	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198018, intron 1 of 21)	intron (NM_198018, intron 1 of 21)	-3828.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36538816-4	chr5	36538322	36539322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 3 of 13)	L1MEf|LINE|L1	-8199.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	1.0	12.5	2.0	13.5	11.0	4.5
Merged-chr18-23840926-2	chr18	23840426	23841426	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 3 of 7)	intron (NM_001162941, intron 3 of 7)	36956.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34307264-4	chr10	34306775	34307775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176968, intron 11 of 11)	intron (NM_176968, intron 11 of 11)	9854.0	NM_030203	72480.0	Mm.21485	NM_030203	ENSMUSG00000039485	Tspyl4	2610102M01Rik|B230210I21Rik|D10Bwg0791e	TSPY-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-24512106-4	chr9	24511642	24512642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9002.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-3723490-4	chr16	3722985	3723985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5361.0	NM_001161791	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97816804-3	chr15	97816302	97817302	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	-1939.0	NM_001204281	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69410457-4	chr11	69409959	69410959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017426, intron 1 of 22)	CpG	3216.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.0	0.0	2.0	0.0	0.0	2.0
Merged-chr13-91696473-2	chr13	91695973	91696973	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 15 of 15)	intron (NM_001360776, intron 15 of 15)	-45048.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-78217883-4	chr16	78217406	78218406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37548.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103214397-3	chr3	103213896	103214896	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42741.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79855094-4	chr10	79854601	79855601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029447)	promoter-TSS (NR_029447)	-130.0	NR_029447	414101.0	Mm.401339	NR_029447	ENSMUSG00000091994	E130317F20Rik	-	RIKEN cDNA E130317F20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66112239-4	chr5	66111748	66112748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-14069.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	25.5	68.0	48.0	29.5	75.5	39.5
Merged-chr6-83794359-2	chr6	83793859	83794859	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019542)	promoter-TSS (NM_019542)	-89.0	NR_136916	665004.0		NR_136916		Gm7443	EG665004	ribosomal protein L27 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30415589-4	chr2	30415094	30416094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138748)	promoter-TSS (NM_138748)	154.0	NM_007760	12908.0	Mm.20396	NM_007760	ENSMUSG00000026853	Crat	AW107812|CARAT	carnitine acetyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-30337097-4	chr6	30336634	30337634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32595.0	NM_001169576	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7216457-2	chr9	7215957	7216957	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31952.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120328581-2	chr14	120328081	120329081	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	22129.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0.0	1.5	0.0	0.0	1.5	0.0
Merged-chr7-28368266-2	chr7	28367766	28368766	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138752, intron 7 of 18)	intron (NM_138752, intron 7 of 18)	4396.0	NM_138752	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29522234-4	chr19	29521728	29522728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015567)	promoter-TSS (NR_015567)	-54.0	NM_001081319	226089.0	Mm.353838	NM_177641	ENSMUSG00000038658	Ric1	C030046E11Rik|C130057E09Rik|Kiaa1432	RAB6A GEF complex partner 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120353841-4	chr11	120353331	120354331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5153.0	NR_038126	66838.0	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-48881125-4	chr7	48880625	48881625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013368)	promoter-TSS (NM_001013368)	-84.0	NM_001013368	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-38183884-4	chr7	38183397	38184397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028166, exon 1 of 4)	5' UTR (NM_028166, exon 1 of 4)	110.0	NM_028166	72244.0	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	10.5	24.5	19.0	1.0	12.0	2.5
Merged-chr11-106036811-4	chr11	106036322	106037322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027946)	promoter-TSS (NM_027946)	-50.0	NM_027946	71833.0	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7018429-5	chr19	7017930	7018930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362399, intron 2 of 14)	intron (NM_001362399, intron 2 of 14)	1039.0	NM_153795	108101.0	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-67844306-4	chr13	67843817	67844817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11587.0	NM_001309373	102637366.0	Mm.121460	NM_001015506	ENSMUSG00000058246	Gm10037	EG328280|Rslcan24	predicted gene 10037	protein-coding	2.5	5.5	10.5	5.5	4.5	4.5
Merged-chr11-59560457-2	chr11	59559957	59560957	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 7 of 9)	RLTR9E|LTR|ERVK	11281.0	NM_001011789	257962.0	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-54734558-4	chr9	54734051	54735051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023191)	promoter-TSS (NM_023191)	-2.0	NM_001025375	66317.0	Mm.28437	NM_023191	ENSMUSG00000061559	Wdr61	2700038L12Rik|2810418I05Rik|REC14	WD repeat domain 61	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34821606-4	chr1	34821123	34822123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160236, intron 3 of 6)	L1ME2|LINE|L1	19901.0	NM_183019	226970.0	Mm.41604	NM_183019	ENSMUSG00000037509	Arhgef4	9330140K16Rik|Asef	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69073550-4	chr11	69073048	69074048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_028566)	TTS (NR_028566)	122.0	NR_028566	100216530.0	Mm.453052	NR_028566	ENSMUSG00000064899	Snord118	MBI-34	small nucleolar RNA, C/D box 118	snoRNA	29.0	48.0	36.5	30.0	66.0	49.0
Merged-chr1-172522716-4	chr1	172522192	172523192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027972, intron 1 of 11)	intron (NM_027972, intron 1 of 11)	1562.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	32.5	11.5	37.0	7.5	26.5	5.0
Merged-chr5-120526447-4	chr5	120525946	120526946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 11 of 13)	intron (NM_001177595, intron 11 of 13)	15254.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-87472332-4	chr12	87471833	87472833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025507)	promoter-TSS (NM_025507)	-34.0	NM_025507	66354.0	Mm.271174	NM_025507	ENSMUSG00000021039	Snw1	2310008B08Rik|AW048543|NCoA-62|SKIP|Skiip	SNW domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171637325-4	chr1	171636885	171637885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144539, exon 6 of 8)	exon (NM_144539, exon 6 of 8)	4515.0	NR_106151	102465784.0		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	51.5	108.0	79.5	43.5	145.0	69.5
Merged-chr7-128520663-2	chr7	128520163	128521163	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-2920.0	NM_013863	29810.0	Mm.84073	NM_013863	ENSMUSG00000030847	Bag3	AA407278|Bis|mg638	BCL2-associated athanogene 3	protein-coding	2.5	3.5	4.5	2.0	0.0	0.0
Merged-chr1-77741493-4	chr1	77740997	77741997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20A|LTR|ERVK	-226409.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	32.5	49.0	37.0	5.5	20.5	18.0
Merged-chr15-83145089-2	chr15	83144589	83145589	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 1 of 7)	intron (NM_001347082, intron 1 of 7)	4289.0	NM_178627	73826.0	Mm.23758	NM_178627	ENSMUSG00000041815	Poldip3	1110008P04Rik|AA408269|AL022852|C77954|PDIP46|SKAR|mKIAA1649	polymerase (DNA-directed), delta interacting protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4427451-4	chr7	4426972	4427972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001290409, exon 6 of 6)	3' UTR (NM_001290409, exon 6 of 6)	18185.0	NM_175372	108841.0	Mm.413106	NM_175372	ENSMUSG00000008435	Rdh13	8430425D21Rik	retinol dehydrogenase 13 (all-trans and 9-cis)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-65098147-4	chr14	65097632	65098632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018788)	promoter-TSS (NM_018788)	-26.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75929826-4	chr15	75929333	75930333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031201)	promoter-TSS (NM_031201)	-15.0	NM_001357005	22122.0	Mm.22596	NM_031201	ENSMUSG00000022570	Tsta3	AI256181|FX|Tstap35b	tissue specific transplantation antigen P35B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29385127-4	chr19	29384622	29385622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 6 of 6)	intron (NM_021893, intron 6 of 6)	17684.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17629920-4	chr10	17629422	17630422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93306.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	6.0	19.0	11.5	3.0	13.0	10.5
Merged-chr3-137848551-4	chr3	137848044	137849044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15943.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	3.0	0.0	2.5	0.0	5.5	11.5
Merged-chr6-72753037-4	chr6	72752545	72753545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079822, intron 3 of 12)	intron (NM_001079822, intron 3 of 12)	36000.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84441263-4	chr10	84440742	84441742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004363)	promoter-TSS (NM_001004363)	-771.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11555376-4	chr8	11554880	11555880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302458)	promoter-TSS (NM_001302458)	-382.0	NM_001302458	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17598685-4	chr6	17598201	17599201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38309.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46787316-2	chr11	46786816	46787816	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-23483.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	0.0	0.0	3.5	0.0	0.0	0.0
Merged-chr17-57357803-4	chr17	57357319	57358319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355723)	promoter-TSS (NM_001355723)	-867.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34084926-2	chr11	34084426	34085426	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 17 of 20)	intron (NM_010696, intron 17 of 20)	13628.0	NR_155520	76874.0	Mm.437529	NR_155520		4930469K13Rik	-	RIKEN cDNA 4930469K13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-106681434-4	chr14	106680934	106681934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-194914.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	7.5	17.5	23.0	3.5	12.5	32.0
Merged-chr8-105374812-4	chr8	105374335	105375335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081333)	promoter-TSS (NM_001081333)	-546.0	NM_001081333	102075.0	Mm.32034	NM_175321	ENSMUSG00000014782	Plekhg4	4931414L13Rik|AI448583|mFLJ00068	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-9071149-4	chr15	9070667	9071667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286255)	promoter-TSS (NM_001286255)	-93.0	NM_001286255	68646.0	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76202026-4	chr11	76201518	76202518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027773)	promoter-TSS (NM_027773)	-38.0	NM_027773	116972.0	Mm.188413	NM_027773	ENSMUSG00000069808	Fam57a	2310047D13Rik|4932415L08Rik|5430402E13Rik|5430420K21Rik|Wdt3	family with sequence similarity 57, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-118301373-4	chr12	118300888	118301888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009239)	promoter-TSS (NM_009239)	52.0	NM_009239	20688.0	Mm.34699	NM_009239	ENSMUSG00000025323	Sp4	5730497N03Rik|HF-1b|HF1-b	trans-acting transcription factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91265155-4	chr2	91264668	91265668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166024)	promoter-TSS (NM_001166024)	53.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	5.0	9.0	10.5	3.0	4.0	17.0
Merged-chr3-108383704-4	chr3	108383179	108384179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040560)	promoter-TSS (NR_040560)	62.0	NR_040560	100038453.0	Mm.214328	NR_040560	ENSMUSG00000074281	Gm12522	-	predicted gene 12522	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-25101372-4	chr5	25100875	25101875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145401)	promoter-TSS (NM_145401)	400.0	NR_027851	67261.0	Mm.461781	NM_026059	ENSMUSG00000043833	2900005J15Rik	-	RIKEN cDNA 2900005J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115635706-4	chr5	115635200	115636200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198163, intron 1 of 5)	intron (NM_198163, intron 1 of 5)	3713.0	NM_198163	77407.0	Mm.27553	NM_198163	ENSMUSG00000029518	Rab35	9530019H02Rik|AU040256|H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134186555-2	chr4	134186054	134187054	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144527, intron 1 of 13)	CpG	531.0	NM_144527	70012.0	Mm.26542	NM_144527	ENSMUSG00000037443	Cep85	2410030J07Rik|AI173272|AI173504|Ccdc21	centrosomal protein 85	protein-coding	32.0	42.0	53.0	20.5	28.5	10.0
Merged-chr4-126819477-4	chr4	126818985	126819985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035525, intron 5 of 23)	intron (NM_001035525, intron 5 of 23)	65715.0	NM_001035526	100317.0	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116638147-4	chr3	116637627	116638627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008246, intron 8 of 11)	intron (NM_008246, intron 8 of 11)	-23540.0	NM_030016	229780.0	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	36.5	137.0	92.5	34.5	73.5	63.5
Merged-chr4-41740986-4	chr4	41740481	41741481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286605, intron 1 of 3)	CpG-9828	378.0	NM_001286540	18391.0	Mm.425181	NM_011014	ENSMUSG00000036078	Sigmar1	Oprs1|Sig1R|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118981610-4	chr10	118981094	118982094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54451.0	NR_110482	216377.0	Mm.208936	NR_110482	ENSMUSG00000112854	Gm38403	C230029M16	predicted gene, 38403	ncRNA	12.0	28.0	35.0	13.5	25.5	24.5
Merged-chr5-96164111-6	chr5	96163535	96164535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2045.0	NM_144910	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25840765-4	chr8	25840280	25841280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011791)	promoter-TSS (NM_011791)	7.0	NM_001359012	23808.0	Mm.27706	NM_011791	ENSMUSG00000031575	Ash2l	-	ASH2 like histone lysine methyltransferase complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33685467-4	chr17	33684965	33685965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029804)	promoter-TSS (NM_029804)	-7.0	NM_029804	76936.0	Mm.311439	NM_029804	ENSMUSG00000059208	Hnrnpm	2610023M21Rik|AA409009|Hnrpm|mKIAA4193	heterogeneous nuclear ribonucleoprotein M	protein-coding	14.5	56.5	23.5	18.5	33.5	26.0
Merged-chr15-97825194-4	chr15	97824691	97825691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	6576.0	NM_019572	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132316061-4	chr1	132315519	132316519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028778)	promoter-TSS (NM_028778)	-106.0	NM_001195025	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10992245-4	chr16	10991750	10992750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	871.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21645858-4	chr5	21645355	21646355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177076)	promoter-TSS (NM_177076)	-129.0	NM_026034	67211.0	Mm.260782	NM_026034	ENSMUSG00000038525	Armc10	2810037C14Rik|Svh	armadillo repeat containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-121440802-4	chr1	121440293	121441293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029955, intron 3 of 23)	MTD|LTR|ERVL-MaLR	9726.0	NM_029955	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	31.0	41.0	45.5	39.5	45.5	35.0
Merged-chr11-117830063-4	chr11	117829552	117830552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027827, intron 2 of 10)	intron (NM_027827, intron 2 of 10)	-4038.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116621451-4	chr11	116620970	116621970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	2782.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-63046555-4	chr11	63046043	63047043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15116.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-115958568-4	chr13	115958053	115959053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	351135.0	NM_021459	16392.0	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	1.5	0.0	4.5	7.5	2.5	6.5
Merged-chr8-69996526-4	chr8	69996026	69997026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145596)	promoter-TSS (NM_145596)	-142.0	NM_145596	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	63.5	111.0	88.5	75.0	144.0	84.5
Merged-chr8-84662886-4	chr8	84662363	84663363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010499)	promoter-TSS (NM_010499)	-11.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	126.5	359.5	223.5	121.0	235.0	178.0
Merged-chr1-191269702-4	chr1	191269215	191270215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45261.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	16.0	27.5	13.5	21.0	23.0	25.0
Merged-chr17-47754371-4	chr17	47753875	47754875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	16444.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	35.5	60.5	54.5	18.5	49.5	44.0
Merged-chr10-94381204-4	chr10	94380703	94381703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	69254.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128704683-1	chr10	128704183	128705183	+	1000.0	f0_balb.idr	intron (NM_183417, intron 1 of 7)	CpG	368.0	NM_183417	12566.0	Mm.111326	NM_016756	ENSMUSG00000025358	Cdk2	A630093N05Rik	cyclin-dependent kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60225660-2	chr11	60225160	60226160	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3079.0	NM_001358315	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16387827-4	chr7	16387302	16388302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285892)	promoter-TSS (NM_001285892)	94.0	NM_001285892	56459.0	Mm.258530	NM_019748	ENSMUSG00000052833	Sae1	2400010M20Rik|2610044L12Rik|AL033372|AOS1|AW743391|D7Ertd177e|HSPC140|Sua1|Uble1a	SUMO1 activating enzyme subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-9976428-4	chr8	9975922	9976922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176953)	promoter-TSS (NM_176953)	-99.0	NM_176953	319583.0	Mm.80584	NM_176953	ENSMUSG00000049717	Lig4	5830471N16Rik|tiny	ligase IV, DNA, ATP-dependent	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50916209-4	chr11	50915696	50916696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178447)	promoter-TSS (NM_178447)	-20.0	NM_001294323	22678.0	Mm.259230	NM_009550	ENSMUSG00000049321	Zfp2	9930007F06Rik|Fnp-2|Zfp-2|mKR2|mkr-2|mszf87	zinc finger protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4234148-4	chr12	4233607	4234607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204912)	promoter-TSS (NM_001204912)	80.0	NM_001204912	69709.0	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79539116-4	chr10	79538637	79539637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5350.0	NM_001302389	50784.0	Mm.28873	NM_015817	ENSMUSG00000052151	Plpp2	Lpp2|PAP2-G|PAP2-gamma|PAP2c|Ppap2c	phospholipid phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53782165-2	chr11	53781665	53782665	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11692.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141646197-4	chr4	141645695	141646695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	17920.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	221.5	529.5	371.5	57.0	154.5	98.0
Merged-chr14-63124421-4	chr14	63123916	63124916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	1954.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34628649-2	chr17	34628149	34629149	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302394)	promoter-TSS (NM_001302394)	-370.0	NM_001302393	54397.0	Mm.373627	NM_019441	ENSMUSG00000015474	Ppt2	0610007M19Rik|AA672937	palmitoyl-protein thioesterase 2	protein-coding	6.5	20.0	13.5	8.0	33.5	14.0
Merged-chr2-36272633-6	chr2	36272120	36273120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42194.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-67724322-4	chr13	67723832	67724832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145622, intron 1 of 3)	intron (NM_145622, intron 1 of 3)	4841.0	NM_145622	235907.0	Mm.440123	NM_145622	ENSMUSG00000071281	Zfp65	KRAB5|Zfp71-rs1|pz114	zinc finger protein 65	protein-coding	80.5	145.0	120.0	55.0	104.5	128.5
Merged-chr11-78346430-2	chr11	78345930	78346930	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313987)	promoter-TSS (NM_001313987)	-280.0	NM_001313986	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-57589454-4	chr8	57588944	57589944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 1 of 11)	intron (NM_001167981, intron 1 of 11)	-62309.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23531731-4	chr13	23531226	23532226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153173)	TTS (NM_153173)	682.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130525664-4	chr2	130525160	130526160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355161, intron 7 of 21)	intron (NM_001355161, intron 7 of 21)	38089.0	NR_040348	321014.0	Mm.442588	NR_040348	ENSMUSG00000060029	4930473A02Rik	-	RIKEN cDNA 4930473A02 gene	ncRNA	57.5	145.0	96.5	107.5	238.5	161.5
Merged-chr8-104118072-4	chr8	104117572	104118572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 2 of 11)	ORR1E|LTR|ERVL-MaLR	-12199.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23888080-4	chr18	23887587	23888587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 7 of 7)	intron (NM_001162941, intron 7 of 7)	-66601.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70468816-4	chr11	70468327	70469327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8843.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33560463-4	chr16	33559968	33560968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 4 of 11)	intron (NM_001083902, intron 4 of 11)	41873.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102572836-1	chr4	102572336	102573336	+	1000.0	f1_balb.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	2776.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	87.5	316.0	167.0	112.5	430.5	235.0
Merged-chr11-69696007-4	chr11	69695518	69696518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034097)	promoter-TSS (NM_001034097)	80.0	NM_011614	21944.0	Mm.8983	NM_011614	ENSMUSG00000097328	Tnfsf12	Apo3l|Dr3l|Dr3lg|Tweak	tumor necrosis factor (ligand) superfamily, member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80752329-4	chr10	80751865	80752865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2838.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167761823-4	chr2	167761328	167762328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie8|DNA|hAT-Charlie	70651.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95850411-6	chr4	95849886	95850886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113412, intron 14 of 15)	intron (NM_001113412, intron 14 of 15)	116649.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	6.5	49.0	28.5	13.0	28.5	19.0
Merged-chr14-25854261-4	chr14	25853754	25854754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013469, intron 1 of 14)	intron (NM_013469, intron 1 of 14)	12099.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	3.0	3.0	1.5	4.0	3.5	0.5
Merged-chr7-24593881-4	chr7	24593382	24594382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_023154, exon 2 of 8)	5' UTR (NM_023154, exon 2 of 8)	-6241.0	NM_001033205	101544.0	Mm.20117	NM_001033205	ENSMUSG00000066721	Zfp575	AI326876|Znf575	zinc finger protein 575	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81860100-4	chr15	81859575	81860575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1749.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	45.0	138.5	78.0	31.5	135.0	69.5
Merged-chr16-93817087-3	chr16	93816591	93817591	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-15030.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	73.0	223.0	172.5	68.0	227.0	171.0
Merged-chr18-83832320-4	chr18	83831825	83832825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	254237.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80051963-9	chr10	80051460	80052460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110342, intron 2 of 6)	intron (NR_110342, intron 2 of 6)	-1528.0	NM_008162	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36933807-4	chr15	36933264	36934264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73638.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71310953-4	chr17	71310453	71311453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145158)	promoter-TSS (NM_145158)	58.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	11.5	21.0	38.5	23.5	44.5	65.5
Merged-chr7-49158686-4	chr7	49158172	49159172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_154465, intron 3 of 3)	MER112|DNA|hAT-Charlie	3486.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108854093-4	chr9	108853614	108854614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134420)	promoter-TSS (NM_134420)	71.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91534701-4	chr12	91534213	91535213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011648, intron 9 of 9)	intron (NM_011648, intron 9 of 9)	54936.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34193032-4	chr7	34192538	34193538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001360710, exon 4 of 6)	exon (NM_001360710, exon 4 of 6)	3632.0	NM_026549	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-16525646-4	chr16	16525148	16526148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	1763.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84222695-4	chr8	84222213	84223213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172503, intron 10 of 13)	intron (NM_172503, intron 10 of 13)	-13806.0	NR_037294	100526528.0		NR_037294	ENSMUSG00000105458	Mir3074-2	mir-3074-2|mmu-mir-3074-2	microRNA 3074-2	ncRNA	34.5	60.0	36.0	30.0	55.5	38.5
Merged-chr10-81167881-4	chr10	81167388	81168388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021501)	promoter-TSS (NM_021501)	-168.0	NM_021501	59004.0	Mm.34428	NM_021501	ENSMUSG00000004934	Pias4	PIASY|Pias-gamma|Piasg	protein inhibitor of activated STAT 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181365415-4	chr2	181364923	181365923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165991)	promoter-TSS (NM_001165991)	0.0	NM_001048148	229007.0	Mm.87720	NM_144894	ENSMUSG00000027582	Zgpat	1500006I01Rik|BC021513	zinc finger, CCCH-type with G patch domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136896722-7	chr4	136896223	136897223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007572, exon 3 of 3)	exon (NM_007572, exon 3 of 3)	2121.0	NM_007572	12259.0	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	40.5	152.0	98.0	58.0	189.5	109.5
Merged-chr3-9828749-4	chr3	9828254	9829254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195031, intron 1 of 8)	intron (NM_001195031, intron 1 of 8)	4925.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	19.5	61.5	55.5	35.0	61.0	58.0
Merged-chr1-36272690-4	chr1	36272186	36273186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153408, intron 1 of 3)	intron (NM_153408, intron 1 of 3)	739.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-86960713-4	chr5	86960202	86961202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34199.0	NM_152811	71773.0	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106066123-6	chr11	106065641	106066641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027346)	promoter-TSS (NM_027346)	34.0	NM_027346	70207.0	Mm.343857	NM_027346	ENSMUSG00000001983	Taco1	2310066I18Rik|Ccdc44	translational activator of mitochondrially encoded cytochrome c oxidase I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54303833-2	chr13	54303333	54304333	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67516.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20827625-4	chr14	20827131	20828131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9031.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	121.5	199.0	135.5	98.5	203.0	90.5
Merged-chr16-90200498-2	chr16	90199998	90200998	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-20244.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-71003266-2	chr11	71002766	71003766	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178367, intron 1 of 11)	intron (NM_178367, intron 1 of 11)	1166.0	NM_178367	216877.0	Mm.35399	NM_178367	ENSMUSG00000040620	Dhx33	3110057P17Rik|9430096J02Rik|Ddx33	DEAH (Asp-Glu-Ala-His) box polypeptide 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46855902-2	chr17	46855402	46856402	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24489.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-47713465-4	chr8	47712962	47713962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359133, intron 1 of 2)	CpG	469.0	NM_001359133	70925.0	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-8112126-3	chr14	8111649	8112649	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	13938.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181186748-4	chr2	181186267	181187267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151465)	promoter-TSS (NR_151465)	-55.0	NR_151465	66496.0	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40247033-4	chr10	40246531	40247531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023323)	promoter-TSS (NM_023323)	8.0	NM_023323	67239.0	Mm.11480	NM_023323	ENSMUSG00000038510	Rpf2	2810470K21Rik|AU040229|AU043242|Bxdc1	ribosome production factor 2 homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96743436-4	chr15	96742933	96743933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43705.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166905995-4	chr2	166905508	166906508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023565)	promoter-TSS (NM_023565)	-88.0	NM_023565	110750.0	Mm.22417	NM_023565	ENSMUSG00000002718	Cse1l	2610100P18Rik|AA407533|Capts|Cas|Xpo2	chromosome segregation 1-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-137116903-4	chr2	137116439	137117439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013822)	promoter-TSS (NM_013822)	-419.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131352907-4	chr2	131352403	131353403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178607)	promoter-TSS (NM_178607)	-11.0	NM_178607	51902.0	Mm.477523	NM_178607	ENSMUSG00000048911	Rnf24	2810473M14Rik|4930505A13Rik|AI317164|C86507|D2Ertd504e	ring finger protein 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74833558-2	chr11	74833058	74834058	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010813, intron 1 of 5)	intron (NM_010813, intron 1 of 5)	2634.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	8.0	13.5	17.5	13.0	19.5	15.0
Merged-chr7-3629788-6	chr7	3629245	3630245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027328)	promoter-TSS (NM_027328)	184.0	NM_023524	69714.0	Mm.358730	NM_023524	ENSMUSG00000006335	Tfpt	2400004F01Rik|AI450389|Amida|FB1	TCF3 (E2A) fusion partner	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57468087-4	chr9	57467534	57468534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020270)	promoter-TSS (NM_020270)	26.0	NM_001301634	56807.0	Mm.102278	NM_020270	ENSMUSG00000040722	Scamp5	Sc5	secretory carrier membrane protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86663736-4	chr17	86663231	86664231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-90133.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	18.0	24.5	35.0	38.5	39.5	33.5
Merged-chr7-16046587-4	chr7	16046088	16047088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25257.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115414296-4	chr8	115413787	115414787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AmnSINE1|SINE|Deu	292607.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-52000809-4	chr11	52000289	52001289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009458)	promoter-TSS (NM_009458)	-323.0	NM_009458	22210.0	Mm.384918	NM_009458	ENSMUSG00000020390	Ube2b	E2-14k|HR6B|Rad6b|mHR6B	ubiquitin-conjugating enzyme E2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127480759-2	chr10	127480259	127481259	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359246, intron 13 of 23)	intron (NM_001359246, intron 13 of 23)	-20927.0	NM_001359751	237611.0	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	25.0	47.5	35.5	23.5	60.0	40.5
Merged-chr8-106929670-3	chr8	106929177	106930177	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6073.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163995073-4	chr2	163994588	163995588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018753)	promoter-TSS (NM_018753)	-109.0	NM_018753	54401.0	Mm.34319	NM_018753	ENSMUSG00000018326	Ywhab	1300003C17Rik|14-3-3b	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24586743-4	chr5	24586239	24587239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133913)	promoter-TSS (NM_133913)	-11.0	NM_133913	100910.0	Mm.140672	NM_133913	ENSMUSG00000038181	Chpf2	2010209O12Rik|AW060945|Gm42230|mKIAA1402|mir-671	chondroitin polymerizing factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-95919582-4	chr5	95919083	95920083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37356.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5512913-4	chr19	5512409	5513409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2392.0	NM_001024560	225861.0	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38481348-4	chr2	38480880	38481880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30317.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4918274-4	chr12	4917791	4918791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362349, intron 1 of 27)	intron (NM_001362349, intron 1 of 27)	938.0	NM_001362349	320817.0	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61099164-4	chr18	61098649	61099649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6423.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-51845106-4	chr12	51844572	51845572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15536.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	22.5	32.0	48.5	24.0	30.0	46.0
Merged-chr3-84814437-4	chr3	84813959	84814959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1118.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	54.5	112.5	96.0	31.5	104.5	85.5
Merged-chr2-132029924-4	chr2	132029431	132030431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175445)	promoter-TSS (NM_175445)	57.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26389299-4	chr2	26388792	26389792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173180)	promoter-TSS (NM_173180)	24.0	NM_001085407	68112.0	Mm.253771	NM_026563	ENSMUSG00000026927	Sdccag3	C330016H24Rik|C630038K21Rik	serologically defined colon cancer antigen 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130914164-4	chr4	130913672	130914672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	L3b|LINE|CR1	838.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116673872-4	chr6	116673400	116674400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178045)	promoter-TSS (NM_178045)	-64.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-19418041-4	chr13	19417507	19418507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22194.0	NM_001347485	76205.0	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95828209-4	chr15	95827716	95828716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155276, intron 1 of 1)	intron (NR_155276, intron 1 of 1)	1856.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120491312-2	chr11	120490812	120491812	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013770)	promoter-TSS (NM_013770)	-525.0	NM_013770	27376.0	Mm.3991	NM_013770	ENSMUSG00000025792	Slc25a10	Dic	solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-96921221-4	chr5	96920729	96921729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131152)	promoter-TSS (NR_131152)	-43.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	192.0	538.0	396.0	131.0	364.5	342.5
Merged-chr14-77794659-4	chr14	77794173	77795173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033440, exon 3 of 3)	3' UTR (NM_001033440, exon 3 of 3)	4295.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	185.5	375.0	257.0	67.5	118.0	114.0
Merged-chr8-39006300-4	chr8	39005803	39006803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357305, intron 1 of 8)	CpG	458.0	NM_001357306	80286.0	Mm.272722	NM_030254	ENSMUSG00000039530	Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding	15.0	50.0	29.0	19.5	79.5	40.5
Merged-chr19-60161129-4	chr19	60160630	60161630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_026942, exon 5 of 5)	non-coding (NR_026942, exon 5 of 5)	16455.0	NR_026942	107376.0	Mm.245813	NR_026942	ENSMUSG00000053117	E330013P04Rik	9930018I18Rik|AW492152	RIKEN cDNA E330013P04 gene	ncRNA	1.0	3.0	4.0	0.0	3.0	4.0
Merged-chr3-19214777-4	chr3	19214299	19215299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356295, intron 4 of 7)	intron (NM_001356295, intron 4 of 7)	26504.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99116563-4	chr15	99116054	99117054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10291.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129098040-4	chr6	129097549	129098549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153506, intron 2 of 4)	intron (NM_153506, intron 2 of 4)	2854.0	NM_153506	232409.0	Mm.30870	NM_153506	ENSMUSG00000030155	Clec2e	Clra|clr-a	C-type lectin domain family 2, member e	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129400094-4	chr6	129399594	129400594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019985, exon 2 of 6)	exon (NM_019985, exon 2 of 6)	2797.0	NM_001204239	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35193182-4	chr17	35192686	35193686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1321.0	NM_008518	16994.0	Mm.1715	NM_008518	ENSMUSG00000024399	Ltb	AI662801|LTbeta|Tnfc|Tnfsf3|Tnlg1c|p33	lymphotoxin B	protein-coding	19.5	48.5	29.0	15.0	65.5	41.0
Merged-chr17-31563694-2	chr17	31563194	31564194	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1079.0	NR_027493	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59121236-4	chr2	59120745	59121745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 1 of 13)	MTE2a|LTR|ERVL-MaLR	39438.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97942742-4	chr15	97942266	97943266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-21463.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157737347-4	chr2	157736825	157737825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025680)	promoter-TSS (NM_025680)	-76.0	NM_025680	66642.0	Mm.45193	NM_025680	ENSMUSG00000027649	Ctnnbl1	5730471K09Rik|NAP|NYD-SP19|P14L	catenin, beta like 1	protein-coding	6.5	17.0	13.0	2.0	5.5	20.0
Merged-chr7-126770987-4	chr7	126770493	126771493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_024228, exon 8 of 10)	exon (NM_024228, exon 8 of 10)	4579.0	NM_024228	68616.0	Mm.246881	NM_024228	ENSMUSG00000030703	Gdpd3	1110015E22Rik	glycerophosphodiester phosphodiesterase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9828162-3	chr18	9827658	9828658	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	120510.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	0.0	2.0	2.0	3.0	1.5	22.0
Merged-chr11-69074749-2	chr11	69074249	69075249	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	1323.0	NR_028566	100216530.0	Mm.453052	NR_028566	ENSMUSG00000064899	Snord118	MBI-34	small nucleolar RNA, C/D box 118	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10416239-4	chr16	10415708	10416708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011955, intron 3 of 10)	intron (NM_011955, intron 3 of 10)	4270.0	NM_011955	26425.0	Mm.29037	NM_011955	ENSMUSG00000022503	Nubp1	-	nucleotide binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173978970-3	chr1	173978469	173979469	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008327, intron 1 of 6)	Lx3_Mus|LINE|L1	3875.0	NM_008327	26388.0	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66832630-4	chr9	66832119	66833119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026674, intron 2 of 5)	intron (NM_026674, intron 2 of 5)	2087.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135620042-4	chr1	135619543	135620543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22267.0	NR_151586	215714.0	Mm.472859	NM_175447		Gm4793	EG215714	predicted gene 4793	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87433132-4	chr11	87432635	87433635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 1 of 30)	ORR1C2|LTR|ERVL-MaLR	5544.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119618590-4	chr2	119618088	119619088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042653)	promoter-TSS (NM_001042653)	-83.0	NM_001042653	70645.0	Mm.246412	NM_001042653	ENSMUSG00000072980	Oip5	5730547N13Rik|Lint-25|Ms18b	Opa interacting protein 5	protein-coding	10.5	91.0	32.5	28.5	53.5	40.5
Merged-chr17-69199929-6	chr17	69199429	69200429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	40573.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	18.5	63.0	49.5	54.0	41.5	60.0
Merged-chr3-96594199-4	chr3	96593701	96594701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293701)	promoter-TSS (NM_001293701)	-20.0	NM_001293701	69870.0	Mm.292739	NM_027241	ENSMUSG00000028104	Polr3gl	2010003I19Rik	polymerase (RNA) III (DNA directed) polypeptide G like	protein-coding	18.5	74.0	61.5	30.0	29.0	41.5
Merged-chr17-24170888-4	chr17	24170406	24171406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1228.0	NM_001361531	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	123.0	246.0	152.5	62.5	167.5	115.5
Merged-chr12-28635935-4	chr12	28635407	28636407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011300)	promoter-TSS (NM_011300)	46.0	NM_011300	20115.0	Mm.279839	NM_011300	ENSMUSG00000061477	Rps7	Mtu|Rps7A|S7	ribosomal protein S7	protein-coding	78.5	183.5	176.0	59.0	133.5	135.5
Merged-chr14-64638248-2	chr14	64637748	64638748	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-14283.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116668440-4	chr4	116667955	116668955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16781.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-89941217-4	chr7	89940692	89941692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291288)	promoter-TSS (NM_001291288)	12.0	NM_001291289	67669.0	Mm.28679	NM_026304	ENSMUSG00000062797	Hikeshi	0610007P06Rik|1110002N09Rik|l(7)6Rn|l7Rn6	heat shock protein nuclear import factor	protein-coding	7.0	9.5	2.0	3.5	8.0	1.5
Merged-chr3-95650757-4	chr3	95650250	95651250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7971.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	35.0	56.0	56.0	39.5	79.5	66.0
Merged-chr11-99448957-3	chr11	99448453	99449453	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10800.0	NM_023256	66809.0	Mm.28042	NM_023256	ENSMUSG00000035775	Krt20	9030623C06Rik|Ck-20|Ck20|K20|Krt21	keratin 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-80025830-4	chr2	80025346	80026346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	13056.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	12.0	30.0	6.5	12.0	30.5	6.5
Merged-chr13-17805365-4	chr13	17804874	17805874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081058)	promoter-TSS (NM_001081058)	-277.0	NM_027118	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	43.5	130.0	74.0	49.5	84.0	68.5
Merged-chr1-39762206-4	chr1	39761705	39762705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41216.0	NM_001145660	619289.0	Mm.334107	NM_001145660	ENSMUSG00000057173	Rfx8	4933400N17Rik	regulatory factor X 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153145516-4	chr2	153145013	153146013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 11 of 12)	L1MB7|LINE|L1	-15788.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-12316776-2	chr2	12316276	12317276	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14832.0	NM_001001309	241226.0	Mm.329997	NM_001001309	ENSMUSG00000026768	Itga8	AI447669	integrin alpha 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67353622-4	chr17	67353172	67354172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	CpG	787.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98872668-4	chr13	98872147	98873147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 6 of 23)	intron (NM_178716, intron 6 of 23)	18395.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5269308-4	chr6	5268819	5269819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183308, intron 5 of 8)	intron (NM_183308, intron 5 of 8)	-13086.0	NM_173006	269823.0	Mm.9122	NM_173006	ENSMUSG00000029759	Pon3	2810004E20|AI786302	paraoxonase 3	protein-coding	0.5	0.0	0.0	0.0	3.0	4.0
Merged-chr13-83601952-3	chr13	83601428	83602428	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347569, intron 3 of 10)	intron (NM_001347569, intron 3 of 10)	28321.0	NM_001347569	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	13.0	0.0	4.5	3.0	9.5	2.5
Merged-chr5-122850054-4	chr5	122849554	122850554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030564)	promoter-TSS (NM_030564)	-134.0	NM_030564	80751.0	Mm.388529	NM_030564	ENSMUSG00000029474	Rnf34	AW061037|AW536122|BC004042|C88279|RIFF	ring finger protein 34	protein-coding	110.5	269.5	152.0	33.5	179.0	99.5
Merged-chr2-181187806-4	chr2	181187301	181188301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151465, exon 2 of 4)	non-coding (NR_151465, exon 2 of 4)	554.0	NM_001356427	66496.0	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-92636272-2	chr7	92635772	92636772	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028665, exon 1 of 12)	5' UTR (NM_028665, exon 1 of 12)	870.0	NM_028665	73845.0	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	0.0	4.0	0.5	2.5	0.0	0.0
Merged-chr4-126096635-4	chr4	126096144	126097144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138721)	promoter-TSS (NM_138721)	-9.0	NM_001163266	116748.0	Mm.41865	NM_138721	ENSMUSG00000050188	Lsm10	-	U7 snRNP-specific Sm-like protein LSM10	protein-coding	2.5	9.5	6.0	0.0	3.0	7.0
Merged-chr5-123755411-4	chr5	123754898	123755898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042421, intron 2 of 63)	intron (NM_001042421, intron 2 of 63)	5672.0	NM_001042421	208628.0	Mm.441089	NM_001042421	ENSMUSG00000029414	Kntc1	D330012D13|jgl	kinetochore associated 1	protein-coding	9.5	35.5	16.5	1.0	19.0	3.0
Merged-chr1-167370073-4	chr1	167369605	167370605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20114.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-178020938-4	chr2	178020425	178021425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-2359.0	NM_001177400	626848.0	Mm.422604	NM_001177399	ENSMUSG00000074519	Zfp971	Etohi1	zinc finger protein 971	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-40576512-4	chr6	40576012	40577012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021364, exon 6 of 6)	3' UTR (NM_021364, exon 6 of 6)	5124.0	NM_146383	258381.0	Mm.377469	NM_146383	ENSMUSG00000045514	Olfr460	MOR120-2	olfactory receptor 460	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64873010-4	chr7	64872496	64873496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023239)	promoter-TSS (NM_023239)	44.0	NM_023239	66647.0	Mm.19944	NM_023239	ENSMUSG00000070520	Nsmce3	5730494G16Rik|AI642138|BB044375|HCA4|Mageg1|Ndnl2|mage-g1	NSE3 homolog, SMC5-SMC6 complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57581417-4	chr6	57580911	57581911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025992, intron 1 of 22)	intron (NM_025992, intron 1 of 22)	419.0	NM_025992	67138.0	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89998719-4	chr3	89998225	89999225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310681)	promoter-TSS (NM_001310681)	-9.0	NM_001282032	23897.0	Mm.256035	NM_011826	ENSMUSG00000027944	Hax1	HAX-1|HSP1BP-1|Hs1bp1|SIG-111|Silg111|mHAX-1s	HCLS1 associated X-1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-107425097-4	chr8	107424620	107425620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026277)	promoter-TSS (NM_026277)	-82.0	NM_026277	67619.0	Mm.36817	NM_026277	ENSMUSG00000003848	Nob1	1700021I09Rik|ART-4|Nob1p|Psmd8bp1	NIN1/RPN12 binding protein 1 homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-35253178-4	chr6	35252684	35253684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027875, intron 1 of 2)	intron (NR_027875, intron 1 of 2)	452.0	NR_027875	67705.0	Mm.228046	NR_015608	ENSMUSG00000073155	1810058I24Rik	AI414869|AI848234	RIKEN cDNA 1810058I24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-72933826-4	chr14	72933327	72934327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91776.0	NR_027860	668489.0	Mm.158324	NR_027860		Gm9199	EG668489	glycine cleavage system protein H (aminomethyl carrier) pseudogene	pseudo	2.0	17.5	15.0	3.5	13.0	7.0
Merged-chr8-121792360-4	chr8	121791851	121792851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37218.0	NM_145605	234825.0	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	38.0	128.0	70.0	4.0	6.5	3.5
Merged-chr11-53775966-4	chr11	53775482	53776482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159396, exon 9 of 10)	exon (NM_001159396, exon 9 of 10)	5509.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16619809-2	chr1	16619309	16620309	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025773)	promoter-TSS (NM_025773)	-471.0	NM_001271017	66799.0	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	15.0	5.0	11.0	26.0	32.0	34.5
Merged-chr14-73380476-4	chr14	73379982	73380982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008410, intron 1 of 5)	intron (NM_008410, intron 1 of 5)	4807.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60878079-5	chr2	60877459	60878459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	3479.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113433691-4	chr13	113433181	113434181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69163.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21017327-2	chr9	21016827	21017827	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010493, intron 1 of 6)	intron (NM_010493, intron 1 of 6)	1387.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-153957209-4	chr4	153956693	153957693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163019)	promoter-TSS (NM_001163019)	-44.0	NM_175287	97159.0	Mm.7066	NM_175287	ENSMUSG00000047613	A430005L14Rik	C79672	RIKEN cDNA A430005L14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70092225-4	chr11	70091705	70092705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313926)	promoter-TSS (NM_001313926)	-439.0	NM_007493	11890.0	Mm.1357	NM_007493	ENSMUSG00000040963	Asgr2	ASGPR2|Asgr|Asgr-2|HL-2	asialoglycoprotein receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-113684100-4	chr11	113683609	113684609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138598)	promoter-TSS (NM_138598)	42.0	NM_138598	28081.0	Mm.351688	NM_138598	ENSMUSG00000041629	Fam104a	D11Wsu99e	family with sequence similarity 104, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84678231-4	chr2	84677767	84678767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290751)	promoter-TSS (NM_001290751)	-93.0	NM_001290751	66958.0	Mm.371621	NM_025868	ENSMUSG00000050043	Tmx2	2310042M24Rik|AA589631|Txndc14	thioredoxin-related transmembrane protein 2	protein-coding	7.0	21.5	1.5	4.0	9.0	6.0
Merged-chr6-120363907-6	chr6	120363413	120364413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145997)	promoter-TSS (NM_145997)	-186.0	NM_145997	214899.0	Mm.404761	NM_145997	ENSMUSG00000030180	Kdm5a	AA409370|C76986|Jarid1a|RBP2|Rbbp2	lysine (K)-specific demethylase 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8993436-4	chr12	8992936	8993936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159527, intron 10 of 26)	B4A|SINE|B4	19435.0	NM_172470	74682.0	Mm.87389	NM_172470	ENSMUSG00000066643	Wdr35	4930459M12Rik|4931430C06|mKIAA1336	WD repeat domain 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20544631-4	chr9	20544116	20545116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23197.0	NM_001082485	77519.0	Mm.431849	NM_001082485	ENSMUSG00000060510	Zfp266	5330440G10Rik|5730601F06Rik|AW552317	zinc finger protein 266	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65768667-4	chr17	65768148	65769148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	4104.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	31.5	118.5	42.5	48.5	86.0	40.5
Merged-chr4-118428083-4	chr4	118427591	118428591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019422)	promoter-TSS (NM_019422)	-2.0	NM_001039175	54325.0	Mm.282096	NM_019422	ENSMUSG00000006390	Elovl1	AA407424|BB151133|Ssc1	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	protein-coding	14.0	49.5	36.0	17.0	57.5	57.0
Merged-chr5-95953527-2	chr5	95953027	95954027	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-3412.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-23787277-4	chr10	23786775	23787775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011295)	promoter-TSS (NM_011295)	-66.0	NM_011295	20042.0	Mm.371846	NM_011295	ENSMUSG00000061983	Rps12	-	ribosomal protein S12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114875273-4	chr6	114874771	114875771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 3 of 5)	intron (NM_001356371, intron 3 of 5)	46550.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82350061-2	chr15	82349561	82350561	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026914)	TTS (NM_026914)	4015.0	NM_026914	69029.0	Mm.260042	NM_026914	ENSMUSG00000022452	Smdt1	1500032L24Rik|Emre	single-pass membrane protein with aspartate rich tail 1	protein-coding	5.0	6.5	0.5	9.5	2.0	0.5
Merged-chr6-39447995-4	chr6	39447477	39448477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	27599.0	NR_152168	621427.0	Mm.389742	NR_152168	ENSMUSG00000068601	Gm10244	Anmkrn1	predicted gene 10244	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4256594-4	chr18	4256081	4257081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90749.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27932525-3	chr17	27932025	27933025	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	URR1A|DNA|hAT-Charlie	23219.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	14.0	12.5	14.0	21.0	36.5	56.0
Merged-chr10-84409069-4	chr10	84408569	84409569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 2 of 6)	intron (NM_001004363, intron 2 of 6)	31402.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46595330-2	chr18	46594830	46595830	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025698, intron 1 of 2)	MER68C|LTR|ERVL	2205.0	NM_025698	66676.0	Mm.296043	NM_025698	ENSMUSG00000033184	Tmed7	3930401E15Rik|5830493P14Rik|AU044611|AW545765|TRAM	transmembrane p24 trafficking protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45363641-4	chr19	45363131	45364131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009771)	promoter-TSS (NM_009771)	-103.0	NM_001360122	12234.0	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	0.0	1.5	6.0	1.0	9.5	8.0
Merged-chr5-113643290-2	chr5	113642790	113643790	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359060, intron 1 of 4)	intron (NM_001359060, intron 1 of 4)	313.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84061829-4	chr17	84061322	84062322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G1|LTR|ERVL-MaLR	-16838.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21237650-4	chr9	21237126	21238126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016679, exon 1 of 5)	exon (NM_016679, exon 1 of 5)	1706.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-40705244-4	chr3	40704732	40705732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175515)	TTS (NM_175515)	-3639.0	NM_178386	73333.0	Mm.78691	NM_178386	ENSMUSG00000069041	Slc25a31	1700034J06Rik|Ant4|Sfec	solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-130648281-4	chr7	130647784	130648784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004468, intron 3 of 21)	intron (NM_001004468, intron 3 of 21)	-44272.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98283678-4	chr12	98283183	98284183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15048.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119388849-2	chr11	119388349	119389349	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-1623.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-98227263-4	chr3	98226778	98227778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026328, intron 2 of 5)	MIR|SINE|MIR	5122.0	NM_026328	67709.0	Mm.46306	NM_026328	ENSMUSG00000027876	Reg4	2010002L15Rik|GISP|RELP	regenerating islet-derived family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136570221-2	chr1	136569721	136570721	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54680.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3139518-2	chr11	3139011	3140011	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 22 of 32)	MTA_Mm|LTR|ERVL-MaLR	15490.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40068888-4	chr10	40068391	40069391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 3 of 5)	intron (NM_001114332, intron 3 of 5)	-43623.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21571987-4	chr11	21571483	21572483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008618)	promoter-TSS (NM_008618)	-49.0	NM_001316675	17449.0	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	45.5	88.0	77.5	42.0	49.5	49.0
Merged-chr13-119614344-2	chr13	119613844	119614844	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9475.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54941338-4	chr6	54940843	54941843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171007, intron 4 of 11)	RLTR28|LTR|ERVL	30318.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75141265-4	chr11	75140790	75141790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 14 of 18)	intron (NM_001002764, intron 14 of 18)	26862.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	12.5	16.5	20.0	10.0	29.5	23.0
Merged-chr1-58445535-4	chr1	58445018	58446018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027351)	promoter-TSS (NM_027351)	-32.0	NM_027351	70225.0	Mm.340195	NM_027351	ENSMUSG00000026035	Ppil3	2310076N22Rik|2510026K04Rik|Cyp10l	peptidylprolyl isomerase (cyclophilin)-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70776778-4	chr8	70776280	70777280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008841)	promoter-TSS (NM_008841)	-68.0	NM_008841	18709.0	Mm.12945	NM_008841	ENSMUSG00000031834	Pik3r2	p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding	23.0	58.5	41.5	29.0	62.5	53.0
Merged-chr16-77013658-4	chr16	77013174	77014174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013918)	promoter-TSS (NM_013918)	-395.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60198106-2	chr11	60197606	60198606	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001358314)	TTS (NM_001358314)	2511.0	NR_105886	102465555.0		NR_105886	ENSMUSG00000098547	Mir6921	Gm27352|mmu-mir-6921	microRNA 6921	ncRNA	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr6-122812944-2	chr6	122812444	122813444	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-7240.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-44927172-4	chr2	44926691	44927691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-65569.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115582275-4	chr8	115581755	115582755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	124639.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83066878-4	chr11	83066371	83067371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011408, intron 1 of 1)	intron (NM_011408, intron 1 of 1)	1759.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117836530-2	chr11	117836030	117837030	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027827, intron 10 of 10)	intron (NM_027827, intron 10 of 10)	-10516.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172277326-4	chr1	172276825	172277825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178405, intron 20 of 22)	intron (NM_178405, intron 20 of 22)	-18901.0	NM_013734	27222.0	Mm.482392	NM_013734	ENSMUSG00000007107	Atp1a4	-	ATPase, Na+/K+ transporting, alpha 4 polypeptide	protein-coding	33.0	80.0	53.5	54.5	109.0	67.0
Merged-chr1-161250787-2	chr1	161250293	161251293	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303408, intron 1 of 5)	intron (NM_001303408, intron 1 of 5)	417.0	NM_007453	11758.0	Mm.186185	NM_007453	ENSMUSG00000026701	Prdx6	1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2	peroxiredoxin 6	protein-coding	3.5	24.5	12.0	0.0	9.0	3.5
Merged-chr13-8885765-4	chr13	8885228	8886228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145360, exon 1 of 5)	5' UTR (NM_145360, exon 1 of 5)	122.0	NM_145360	319554.0	Mm.29847	NM_145360	ENSMUSG00000058258	Idi1	4832416K17Rik|IPPI1	isopentenyl-diphosphate delta isomerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-101448007-2	chr14	101447507	101448507	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 17 of 18)	intron (NM_001081278, intron 17 of 18)	161184.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122983849-2	chr14	122983349	122984349	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360598)	promoter-TSS (NM_001360598)	-566.0	NR_153663	70551.0	Mm.271988	NM_028651	ENSMUSG00000041594	Tmtc4	4930403J22Rik|5730419O14Rik	transmembrane and tetratricopeptide repeat containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64830225-4	chr9	64829742	64830742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162917, intron 2 of 34)	intron (NM_001162917, intron 2 of 34)	19231.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-52106924-4	chr14	52106421	52107421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2900.0	NM_001360180	15381.0	Mm.427321	NM_016884	ENSMUSG00000060373	Hnrnpc	AL022939|D14Wsu171e|Hnrpc|Hnrpc1|Hnrpc2|hnRNPC1|hnRNPC2|hnrnp-C	heterogeneous nuclear ribonucleoprotein C	protein-coding	65.0	143.0	93.5	57.5	90.0	92.0
Merged-chr5-92511450-4	chr5	92510932	92511932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	-5775.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90655040-4	chr5	90654549	90655549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14522.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	12.0	24.5	29.5	13.5	37.5	14.0
Merged-chr5-99338856-2	chr5	99338356	99339356	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-85929.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4037957-4	chr19	4037462	4038462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013541)	promoter-TSS (NM_013541)	-50.0	NM_013541	14870.0	Mm.299292	NM_013541	ENSMUSG00000060803	Gstp1	GstpiB	glutathione S-transferase, pi 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-18339319-4	chr3	18338818	18339818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-95980.0	NM_007825	13123.0	Mm.316000	NM_007825	ENSMUSG00000039519	Cyp7b1	AW261589|D3Ertd552e|hct-1	cytochrome P450, family 7, subfamily b, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79555084-4	chr10	79554588	79555588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027422)	promoter-TSS (NM_027422)	40.0	NM_001316699	70427.0	Mm.334193	NM_027422	ENSMUSG00000042570	Mier2	2700087H15Rik|mKIAA1193	MIER family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-63132973-4	chr11	63132467	63133467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001302260, exon 1 of 5)	5' UTR (NM_001302260, exon 1 of 5)	164.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7222242-2	chr9	7221742	7222742	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37737.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149155917-4	chr4	149155452	149156452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081274, intron 8 of 12)	intron (NM_001081274, intron 8 of 12)	10130.0	NM_001356332	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63373527-2	chr4	63373027	63374027	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 17 of 21)	intron (NM_001045514, intron 17 of 21)	11078.0	NM_011016	18406.0	Mm.14173	NM_011016	ENSMUSG00000061540	Orm2	Agp1|Orm-2	orosomucoid 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102827926-4	chr14	102827437	102828437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	154695.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-81134949-4	chr3	81134449	81135449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357746, intron 2 of 6)	intron (NM_001357746, intron 2 of 6)	98533.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	1.5	6.5	5.5	9.5	4.0	6.0
Merged-chr14-51883751-4	chr14	51883253	51884253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1089.0	NM_001029990	52535.0	Mm.5750	NM_001029990	ENSMUSG00000004561	Mettl17	2310032K15Rik|D14Ertd209e|Mett11d1	methyltransferase like 17	protein-coding	16.5	41.5	25.0	19.0	34.5	36.5
Merged-chr5-137883112-4	chr5	137882617	137883617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11359.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69417208-2	chr11	69416708	69417708	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3533.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	6.5	46.0	24.0	6.5	25.5	18.5
Merged-chr5-86803491-2	chr5	86802991	86803991	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347375)	promoter-TSS (NM_001347375)	-775.0	NM_001347375	231386.0	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-57531184-4	chr8	57530682	57531682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 11 of 11)	intron (NM_001167981, intron 11 of 11)	19339.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73328494-4	chr13	73327984	73328984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010888)	promoter-TSS (NM_010888)	-2.0	NM_010888	407785.0	Mm.29897	NM_010888	ENSMUSG00000021606	Ndufs6	BC059730|IP13	NADH dehydrogenase (ubiquinone) Fe-S protein 6	protein-coding	0.5	14.0	10.0	6.5	19.0	4.5
Merged-chr14-37135381-4	chr14	37134896	37135896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199122)	promoter-TSS (NM_001199122)	-74.0	NM_078478	66092.0	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43460860-4	chr4	43460354	43461354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4-int|LTR|ERVK	-6228.0	NM_007654	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59563006-4	chr11	59562488	59563488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 7 of 9)	MTE2b|LTR|ERVL-MaLR	8750.0	NM_001011789	257962.0	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-64887647-4	chr18	64887159	64888159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001114386)	promoter-TSS (NM_001114386)	-97.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	15.0	19.5	38.5	10.5	24.0	20.5
Merged-chr6-42245877-4	chr6	42245383	42246383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029555)	promoter-TSS (NM_029555)	-52.0	NM_029555	76263.0	Mm.267014	NM_029555	ENSMUSG00000029864	Gstk1	0610025I19Rik|AW260476|DsbA-L	glutathione S-transferase kappa 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105170333-4	chr1	105169838	105170838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-185669.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-28812963-4	chr4	28812456	28813456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122889)	promoter-TSS (NM_001122889)	-175.0	NM_001290434	13841.0	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-84819556-4	chr11	84819065	84820065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145433)	promoter-TSS (NM_145433)	-50.0	NM_145433	217038.0	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik	mitochondrial rRNA methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-101629034-4	chr2	101628532	101629532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026592)	promoter-TSS (NM_026592)	-46.0	NM_026592	68170.0	Mm.31263	NM_026592	ENSMUSG00000027165	B230118H07Rik	NWC	RIKEN cDNA B230118H07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110286327-4	chr5	110285878	110286878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008993)	promoter-TSS (NM_008993)	59.0	NM_011132	18973.0	Mm.35061	NM_011132	ENSMUSG00000007080	Pole	-	polymerase (DNA directed), epsilon	protein-coding	0.0	0.0	0.0	2.5	3.5	1.5
Merged-chr13-43365549-4	chr13	43365043	43366043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5173.0	NM_178848	68346.0	Mm.35325	NM_178848	ENSMUSG00000054021	Sirt5	0610012J09Rik|1500032M05Rik|AV001953	sirtuin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132983174-4	chr4	132982661	132983661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010208, intron 1 of 12)	intron (NM_010208, intron 1 of 12)	9066.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	69.0	189.0	114.0	46.5	125.0	97.5
Merged-chr11-100396083-3	chr11	100395536	100396536	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010593, intron 1 of 13)	intron (NM_010593, intron 1 of 13)	1754.0	NM_010593	16480.0	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109705492-4	chr8	109704999	109705999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286393)	promoter-TSS (NM_001286393)	-47.0	NM_001286393	75871.0	Mm.180410	NM_029468	ENSMUSG00000031728	Zfp821	4930566A11Rik|Znf821	zinc finger protein 821	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28232629-4	chr17	28232132	28233132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011145)	promoter-TSS (NM_011145)	-122.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-49744442-4	chr2	49743995	49744995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008449, intron 20 of 25)	intron (NM_008449, intron 20 of 25)	-43191.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-32365717-4	chr3	32365150	32366150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009517)	promoter-TSS (NM_009517)	15.0	NM_009517	22401.0	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-67588580-4	chr11	67588072	67589072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109657, intron 1 of 13)	MIR3|SINE|MIR	2072.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.0	3.5	0.0	1.0	9.0	1.0
Merged-chr2-167982797-2	chr2	167982297	167983297	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001080708, exon 20 of 22)	exon (NM_001080708, exon 20 of 22)	27796.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88134684-2	chr17	88134184	88135184	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	9172.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134556398-3	chr6	134555881	134556881	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 1 of 22)	MER92A|LTR|ERV1	10532.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	133.5	267.5	213.5	49.5	81.0	49.5
Merged-chr10-60958171-4	chr10	60957661	60958661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-2562.0	NR_130327	100316671.0		NR_130327	ENSMUSG00000080526	Mir466j	Mirn466j|mmu-mir-466j	microRNA 466j	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107636427-2	chr9	107635927	107636927	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1085.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125292096-4	chr5	125291595	125292595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 7 of 10)	intron (NM_001205083, intron 7 of 10)	48999.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	9.0	7.5	10.0	4.0	25.5	13.5
Merged-chr17-28007343-4	chr17	28006834	28007834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 11 of 24)	intron (NM_181413, intron 11 of 24)	73250.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	1.0	16.5	10.0	19.0	18.0	4.0
Merged-chr14-63078528-4	chr14	63078013	63079013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	23440.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-78862111-4	chr12	78861597	78862597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026114)	promoter-TSS (NM_026114)	25.0	NM_026114	13665.0	Mm.196220	NM_026114	ENSMUSG00000021116	Eif2s1	0910001O23Rik|2410026C18Rik|35kDa|Eif2a|eIF2alpha	eukaryotic translation initiation factor 2, subunit 1 alpha	protein-coding	89.0	178.0	130.0	118.0	232.0	159.5
Merged-chr17-43573890-4	chr17	43573422	43574422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	5471.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	51.5	75.0	47.0	36.0	77.5	61.5
Merged-chr7-43667763-4	chr7	43667280	43668280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS_Mm|LTR|ERV1	-4251.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-42264918-4	chr6	42264413	42265413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007610)	promoter-TSS (NM_007610)	-72.0	NM_007610	12366.0	Mm.3921	NM_007610	ENSMUSG00000029863	Casp2	CASP-2|ICH-1|NEDD-2|Nedd2	caspase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101443081-2	chr11	101442581	101443581	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011289, intron 2 of 4)	intron (NM_011289, intron 2 of 4)	836.0	NM_011289	19942.0	Mm.340658	NM_011289	ENSMUSG00000063316	Rpl27	-	ribosomal protein L27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88142187-3	chr15	88141687	88142687	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-172687.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115076814-4	chr11	115076317	115077317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-14614.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35599185-4	chr18	35598671	35599671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357471, intron 1 of 3)	CpG	554.0	NM_001357472	67869.0	Mm.126534	NM_026420	ENSMUSG00000037058	Paip2	2310050K10Rik|AU045972	polyadenylate-binding protein-interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125331174-4	chr6	125330670	125331670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011324, exon 2 of 12)	exon (NM_011324, exon 2 of 12)	9830.0	NM_011324	20276.0	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	22.0	50.5	23.5	33.0	34.0	42.0
Merged-chr11-62280783-4	chr11	62280269	62281269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029704)	promoter-TSS (NM_029704)	626.0	NM_027198	69747.0	Mm.141150	NM_027198	ENSMUSG00000014243	Zswim7	2410012H22Rik	zinc finger SWIM-type containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-56097972-7	chr9	56097470	56098470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	7994.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87432609-4	chr16	87432098	87433098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081068)	promoter-TSS (NM_001081068)	8.0	NM_001081068	78913.0	Mm.249005	NM_001081068	ENSMUSG00000052299	Ltn1	4930528H02Rik|AV266914|C87237|Listerin|Rnf160|Zfp294	listerin E3 ubiquitin protein ligase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31658851-4	chr17	31658353	31659353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357907)	promoter-TSS (NM_001357907)	-89.0	NM_001357907	108121.0	Mm.379289	NM_024187	ENSMUSG00000061613	U2af1	2010107D16Rik	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1	protein-coding	14.5	34.0	30.0	22.5	19.0	9.5
Merged-chr2-129413787-4	chr2	129413308	129414308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42669.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	0.0	21.0	12.0	47.5	126.5	51.5
Merged-chr16-94241348-4	chr16	94240847	94241847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 5 of 10)	ORR1D2|LTR|ERVL-MaLR	48944.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143548681-4	chr5	143548185	143549185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026050)	promoter-TSS (NM_026050)	-21.0	NM_133703	67238.0	Mm.383219	NM_026050	ENSMUSG00000083012	Fam220a	1500026F15Rik|2810453I06Rik|AW047776|Acpin1|Sipar	family with sequence similarity 220, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98171572-4	chr7	98171060	98172060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007602, intron 1 of 12)	intron (NM_007602, intron 1 of 12)	-5634.0	NR_045972	330599.0	Mm.406608	NR_045969		Gm16938	-	predicted gene, 16938	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-41160692-2	chr9	41160192	41161192	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2630.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	94.0	209.0	125.0	30.5	105.5	55.5
Merged-chr2-91166687-2	chr2	91166187	91167187	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177719, intron 13 of 34)	intron (NM_001177719, intron 13 of 34)	12634.0	NM_001177720	228355.0	Mm.36410	NM_145527	ENSMUSG00000040687	Madd	9630059K23Rik|IG20	MAP-kinase activating death domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55466470-4	chr12	55465973	55466973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26174.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21370804-4	chr11	21370328	21371328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139297)	promoter-TSS (NM_139297)	-199.0	NM_139297	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	13.5	40.0	34.5	12.5	18.0	13.5
Merged-chr10-37232081-4	chr10	37231581	37232581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93155.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62059243-4	chr18	62058756	62059756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106181.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	14.5	16.0	18.0	9.0	13.0	12.5
Merged-chr1-170709681-4	chr1	170709201	170710201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081304, exon 16 of 16)	3' UTR (NM_001081304, exon 16 of 16)	65169.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119462757-4	chr13	119462275	119463275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113550)	promoter-TSS (NM_001113550)	16.0	NM_001360805	67392.0	Mm.390641	NM_026127	ENSMUSG00000062822	4833420G17Rik	2210017J06Rik|5730533D17Rik|AW107518|C85193	RIKEN cDNA 4833420G17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4001726-2	chr19	4001226	4002226	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025529, intron 3 of 3)	intron (NM_025529, intron 3 of 3)	1146.0	NM_025529	66387.0	Mm.259222	NM_025529	ENSMUSG00000110949	Nudt8	2310039H17Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78244728-4	chr10	78244229	78245229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081055)	promoter-TSS (NM_001081055)	-87.0	NM_001081055	216131.0	Mm.27539	NM_001081055	ENSMUSG00000000374	Trappc10	B230307C21Rik|Gm870|Tmem1|b2b2416Clo|b2b2613Clo	trafficking protein particle complex 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23993702-4	chr17	23993198	23994198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133731, exon 6 of 6)	3' UTR (NM_133731, exon 6 of 6)	4402.0	NM_133731	70835.0	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	5.5	7.0	5.5	11.5	10.5	5.5
Merged-chr3-60080782-4	chr3	60080267	60081267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1102.0	NM_032400	84112.0	Mm.125110	NM_032400	ENSMUSG00000027762	Sucnr1	Gpr91	succinate receptor 1	protein-coding	0.0	5.0	0.0	0.0	0.0	0.5
Merged-chr7-24902993-4	chr7	24902490	24903490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008488)	promoter-TSS (NM_008488)	4.0	NM_001130151	16801.0	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83578534-4	chr11	83578043	83579043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011338)	promoter-TSS (NM_011338)	93.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119674993-4	chr2	119674466	119675466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030112)	promoter-TSS (NM_030112)	-102.0	NM_030112	76246.0	Mm.33437	NM_030112	ENSMUSG00000027304	Rtf1	2900005O08Rik|6530416A09Rik|AI853581|AU043144|AW553985|Gtl7|cbp82	RTF1, Paf1/RNA polymerase II complex component	protein-coding	19.0	27.0	29.5	33.0	39.5	30.5
Merged-chr5-114707775-4	chr5	114707262	114708262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029992)	promoter-TSS (NM_029992)	-17.0	NM_029992	77832.0	Mm.239698	NM_029992	ENSMUSG00000002486	Tchp	A930031F18Rik|AV279199	trichoplein, keratin filament binding	protein-coding	0.0	2.5	1.5	0.0	3.0	2.0
Merged-chr11-3170688-2	chr11	3170187	3171187	+	1000.0	f0_balb.idr|f1_balb.idr	exon (NM_030207, exon 7 of 33)	exon (NM_030207, exon 7 of 33)	22776.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20098151-4	chr16	20097662	20098662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029436, intron 1 of 7)	CpG	608.0	NM_029436	75785.0	Mm.392450	NM_029436	ENSMUSG00000062901	Klhl24	1110046J11Rik|4930429H24Rik|6530402O20Rik|C85082	kelch-like 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83649532-4	chr11	83649030	83650030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011337)	promoter-TSS (NM_011337)	-152.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-10873762-4	chr15	10873256	10874256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44705.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45250990-2	chr9	45250490	45251490	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15717.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111047461-2	chr12	111046961	111047961	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198023, intron 2 of 11)	B1_Mus1|SINE|Alu	7663.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-72710006-4	chr14	72709506	72710506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207636)	promoter-TSS (NM_207636)	-3.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	16.0	47.0	46.5	18.5	48.0	46.0
Merged-chr1-51934727-4	chr1	51934217	51935217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18739.0	NM_010863	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	4.0	4.5	9.5	6.5	23.5	23.0
Merged-chr15-81926255-4	chr15	81925704	81926704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030229)	promoter-TSS (NM_030229)	9.0	NM_030229	78929.0	Mm.215115	NM_030229	ENSMUSG00000022476	Polr3h	5031409G22Rik|RPC8	polymerase (RNA) III (DNA directed) polypeptide H	protein-coding	5.0	6.5	11.5	8.5	7.0	11.5
Merged-chr5-88595684-4	chr5	88595121	88596121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 2 of 13)	intron (NM_001359208, intron 2 of 13)	12108.0	NM_001359209	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135478294-4	chr5	135477880	135478880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	B3|SINE|B2	66742.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70949699-4	chr14	70949191	70950191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	59584.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	80.5	108.5	133.5	43.5	113.5	101.5
Merged-chr5-62756018-4	chr5	62755508	62756508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	10169.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10947417-4	chr19	10946871	10947871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023731, intron 1 of 3)	intron (NM_023731, intron 1 of 3)	1895.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-14189295-4	chr10	14188794	14189794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	222915.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	7.0	33.0	19.5	6.5	19.5	7.0
Merged-chr17-27858276-4	chr17	27857753	27858753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080769, intron 1 of 20)	RSINE1|SINE|B4	1746.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	32.0	69.5	37.5	51.0	56.5	36.5
Merged-chr6-113326757-4	chr6	113326230	113327230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_149720)	promoter-TSS (NR_149720)	-246.0	NR_149720	18294.0	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143403839-4	chr5	143403359	143404359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025841)	promoter-TSS (NM_025841)	39.0	NM_025841	66913.0	Mm.181880	NM_025841	ENSMUSG00000079111	Kdelr2	1110007A14Rik	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118170364-4	chr7	118169862	118170862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001031814, intron 31 of 62)	RLTR13B1|LTR|ERVK	-40737.0	NM_019419	54208.0	Mm.29924	NM_019419	ENSMUSG00000030654	Arl6ip1	AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding	15.0	42.5	46.5	28.0	61.0	31.0
Merged-chr9-77931069-4	chr9	77930598	77931598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134255, intron 1 of 7)	intron (NM_134255, intron 1 of 7)	13733.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	6.0	35.0	54.5	31.5	39.5	33.5
Merged-chr15-101252775-4	chr15	101252290	101253290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-14056.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	36.0	158.0	112.5	42.0	176.5	87.0
Merged-chr3-27218817-4	chr3	27218312	27219312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	35808.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97348654-4	chr15	97348178	97349178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 3 of 5)	intron (NM_172293, intron 3 of 5)	-101391.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95146768-4	chr10	95146268	95147268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131146)	promoter-TSS (NR_131146)	-943.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70374738-4	chr8	70374226	70375226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016685, intron 3 of 18)	CpG	1178.0	NM_016685	12845.0	Mm.45071	NM_016685	ENSMUSG00000031849	Comp	TSP5	cartilage oligomeric matrix protein	protein-coding	4.0	13.0	21.5	3.5	8.5	7.5
Merged-chr3-106548391-4	chr3	106547904	106548904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133869)	promoter-TSS (NM_133869)	-602.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119422823-4	chr4	119422328	119423328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355214)	promoter-TSS (NM_001355214)	144.0	NM_001014900	332934.0	Mm.388911	NM_001014900	ENSMUSG00000070806	Zmynd12	AI414736	zinc finger, MYND domain containing 12	protein-coding	5.0	30.0	16.5	1.5	42.5	35.0
Merged-chr4-59871102-4	chr4	59870669	59871669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 3 of 8)	intron (NM_172468, intron 3 of 8)	43887.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	35.0	19.0	7.0	14.0	24.5	17.5
Merged-chr14-102903046-4	chr14	102902542	102903542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79590.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143732478-4	chr5	143731962	143732962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029749)	promoter-TSS (NM_029749)	-182.0	NM_029749	76800.0	Mm.259620	NM_029749	ENSMUSG00000051306	Usp42	2410140K03Rik|3110031A07Rik|A630018G05Rik|D5Ertd591e	ubiquitin specific peptidase 42	protein-coding	2.5	5.5	0.5	0.0	2.0	2.5
Merged-chr11-78177096-2	chr11	78176596	78177596	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080849)	promoter-TSS (NM_080849)	-430.0	NM_080849	140859.0	Mm.23788	NM_080849	ENSMUSG00000017405	Nek8	4632401F23Rik|b2b1449Clo|jck	NIMA (never in mitosis gene a)-related expressed kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108761423-4	chr12	108760914	108761914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31897.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-41574895-2	chr3	41574395	41575395	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130186, intron 1 of 10)	intron (NM_001130186, intron 1 of 10)	10015.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	1.5	1.0	13.5	1.0	9.0	8.0
Merged-chr4-43031428-4	chr4	43030919	43031919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023231)	promoter-TSS (NM_023231)	-35.0	NM_023231	66592.0	Mm.331565	NM_023231	ENSMUSG00000028455	Stoml2	0610038F01Rik|MSLP2|SLP-2	stomatin (Epb7.2)-like 2	protein-coding	30.5	105.0	48.5	38.5	92.0	59.5
Merged-chr7-25855288-2	chr7	25854788	25855788	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38758.0	NM_028775	74134.0	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-78809017-4	chr18	78808522	78809522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053099, intron 4 of 5)	intron (NM_053099, intron 4 of 5)	-212072.0	NM_207651	27411.0	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120579090-2	chr11	120578590	120579590	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133796, exon 6 of 6)	3' UTR (NM_133796, exon 6 of 6)	2530.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25252504-4	chr9	25252001	25253001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205367)	promoter-TSS (NM_001205367)	62.0	NM_001205367	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38993038-4	chr18	38992542	38993542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175164)	promoter-TSS (NM_175164)	-103.0	NM_001361073	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	1.5	1.0	2.0	0.5	0.5	0.0
Merged-chr16-52185111-4	chr16	52184618	52185618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 14 of 17)	intron (NM_001033238, intron 14 of 17)	153569.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172528874-4	chr1	172528370	172529370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027972, intron 2 of 11)	intron (NM_027972, intron 2 of 11)	7740.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	16.0	0.0	0.0	12.5	0.0	9.5
Merged-chr6-108569628-4	chr6	108569130	108570130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53537.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	2.0	8.0	14.5	15.0	47.5	25.5
Merged-chr13-60604687-2	chr13	60604187	60605187	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	ORR1A2|LTR|ERVL-MaLR	2476.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	3.5	7.5	11.5	7.0	17.5	6.5
Merged-chr6-11926247-4	chr6	11925722	11926722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_029404, exon 1 of 17)	5' UTR (NM_029404, exon 1 of 17)	341.0	NM_001168382	75725.0	Mm.212411	NM_029404	ENSMUSG00000029629	Phf14	1110001C23Rik|4932409F11Rik|5730446A07Rik|AA623952|AV297001|mKIAA0783	PHD finger protein 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-36251671-4	chr8	36251191	36252191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2175.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	39.0	66.0	43.5	47.0	137.5	97.0
Merged-chr7-128392492-4	chr7	128391979	128392979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 3 of 4)	intron (NM_026418, intron 3 of 4)	25693.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	29.5	45.5	36.5	29.5	41.5	35.0
Merged-chr13-52188810-4	chr13	52188300	52189300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92059.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96057916-4	chr3	96057430	96058430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013841, exon 1 of 15)	5' UTR (NM_013841, exon 1 of 15)	525.0	NM_013841	22365.0	Mm.263185	NM_013841	ENSMUSG00000015747	Vps45	AI462172|AW554165|mVps45	vacuolar protein sorting 45	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8802376-4	chr19	8801879	8802879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001098237)	promoter-TSS (NM_001098237)	-117.0	NM_133759	75291.0	Mm.23423	NM_133759	ENSMUSG00000071661	Zbtb3	4930563M09Rik	zinc finger and BTB domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110601387-4	chr12	110600874	110601874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030238)	promoter-TSS (NM_030238)	-21.0	NM_030238	13424.0	Mm.181430	NM_030238	ENSMUSG00000018707	Dync1h1	9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325	dynein cytoplasmic 1 heavy chain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8444109-1	chr15	8443609	8444609	+	1000.0	f0_balb.idr	intron (NM_201232, intron 1 of 45)	CpG	354.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-99006784-4	chr13	99006307	99007307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22242.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24454802-4	chr17	24454321	24455321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_125990, intron 1 of 13)	CpG	571.0	NM_001301784	13560.0	Mm.163132	NM_007893	ENSMUSG00000024137	E4f1	p120E4F|phi-AP3	E4F transcription factor 1	protein-coding	164.5	366.0	268.5	287.5	383.0	347.5
Merged-chr17-80728632-4	chr17	80728107	80729107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290345)	promoter-TSS (NM_001290345)	-582.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-139919986-4	chr2	139919471	139920471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110352, intron 9 of 12)	intron (NR_110352, intron 9 of 12)	146834.0	NM_001159640	75812.0	Mm.293449	NM_175225	ENSMUSG00000039033	Tasp1	4930485D02Rik|AW986064	taspase, threonine aspartase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53451108-3	chr19	53450777	53451777	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028427, intron 4 of 9)	intron (NR_028427, intron 4 of 9)	13519.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	0.0	6.5	1.5	0.0	5.5	6.0
Merged-chr8-116314824-4	chr8	116314304	116315304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-190211.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-53785204-4	chr1	53784716	53785716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133810)	promoter-TSS (NM_133810)	-1.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	80.0	214.0	141.5	60.0	163.5	134.5
Merged-chr2-83941003-4	chr2	83940507	83941507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027964, intron 1 of 8)	intron (NM_027964, intron 1 of 8)	219.0	NM_027964	71861.0	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54008973-4	chr6	54008499	54009499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110484, intron 2 of 3)	intron (NR_110484, intron 2 of 3)	30308.0	NR_110484	320178.0	Mm.320413	NR_110484	ENSMUSG00000108060	4921529L05Rik	4930590G02Rik	RIKEN cDNA 4921529L05 gene	ncRNA	14.5	38.0	23.0	11.0	41.5	22.0
Merged-chr10-52417464-4	chr10	52416972	52417972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030250)	promoter-TSS (NM_030250)	-75.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121585575-4	chr8	121585071	121586071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4897.0	NM_026160	67443.0	Mm.28357	NM_026160	ENSMUSG00000031812	Map1lc3b	1010001C15Rik|Atg8|LC3b|Map1lc3	microtubule-associated protein 1 light chain 3 beta	protein-coding	9.0	29.5	20.5	14.5	36.5	27.0
Merged-chr13-65278726-4	chr13	65278219	65279219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178364)	promoter-TSS (NM_178364)	-135.0	NM_178364	170936.0	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding	43.5	44.0	46.5	14.5	73.5	36.5
Merged-chr5-3199105-4	chr5	3198621	3199621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-144772.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59615100-4	chr15	59614595	59615595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33559.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	98.0	168.5	129.5	66.5	178.0	138.5
Merged-chr4-130360044-4	chr4	130359519	130360519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153160)	promoter-TSS (NM_153160)	-27.0	NM_153160	619605.0	Mm.297196	NM_153160	ENSMUSG00000028772	Zcchc17	2810055E05Rik|HSPC251|LDC4|pNO40|pS1D	zinc finger, CCHC domain containing 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61978002-3	chr9	61977494	61978494	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 2 of 7)	(CA)n|Simple_repeat|Simple_repeat	-31195.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-92611741-1	chr13	92611241	92612241	+	1000.0	f1_balb.idr	intron (NM_172588, intron 1 of 11)	intron (NM_172588, intron 1 of 11)	603.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	3.5	14.0	1.5	2.5	13.5	3.5
Merged-chr6-54948808-4	chr6	54948284	54949284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171007, intron 2 of 11)	intron (NM_001171007, intron 2 of 11)	22877.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91549845-4	chr16	91549323	91550323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008338, intron 1 of 6)	intron (NM_008338, intron 1 of 6)	2729.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-85047888-4	chr2	85047391	85048391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001136081)	TTS (NM_001136081)	-2569.0	NM_001081260	228140.0	Mm.23606	NM_001081260	ENSMUSG00000033955	Tnks1bp1	Tab182|mKIAA1741	tankyrase 1 binding protein 1	protein-coding	2.0	6.5	12.5	5.0	15.5	8.5
Merged-chr7-143649599-4	chr7	143649049	143650049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023680, exon 1 of 7)	exon (NM_023680, exon 1 of 7)	115.0	NM_001311145	79202.0	Mm.261384	NM_023680	ENSMUSG00000010751	Tnfrsf22	2810028K06Rik|C130035G06Rik|SOBa|Tnfrh2|Tnfrsf1al2|mDcTrailr2	tumor necrosis factor receptor superfamily, member 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-44962410-4	chr2	44961910	44962910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60767.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-66937292-4	chr10	66936799	66937799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16915.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98150512-4	chr11	98150000	98151000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028149)	promoter-TSS (NM_028149)	-884.0	NM_028149	72194.0	Mm.218350	NM_028149	ENSMUSG00000020883	Fbxl20	2610511F20Rik|4632423N09Rik|AI849362|AL117906|C86145|Fbl2|Scr|mKIAA4147	F-box and leucine-rich repeat protein 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136893661-2	chr4	136893150	136894150	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007574)	promoter-TSS (NM_007574)	-736.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	38.5	108.0	77.5	74.0	171.0	91.5
Merged-chr2-5769880-4	chr2	5769397	5770397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55135.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	45.5	46.5	23.5	30.5	66.5	36.5
Merged-chr5-76524842-4	chr5	76524362	76525362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4445.0	NM_001359372	69940.0	Mm.403233	NM_027270	ENSMUSG00000036435	Exoc1	2810407P21Rik|A730011E05Rik|SEC3|Sec3l1|Sec3p	exocyst complex component 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54901069-4	chr18	54900572	54901572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	89108.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	41.0	103.0	75.0	41.5	109.0	73.5
Merged-chr5-122602451-3	chr5	122601998	122602998	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009879, intron 6 of 18)	intron (NM_009879, intron 6 of 18)	12046.0	NM_001358919	12589.0	Mm.10125	NM_009879	ENSMUSG00000029469	Ift81	AW060663|Cdv-1|Cdv-1r|Cdv1	intraflagellar transport 81	protein-coding	0.0	14.0	4.0	0.0	3.5	1.5
Merged-chr8-91134118-4	chr8	91133620	91134620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302337)	promoter-TSS (NM_001302337)	-93.0	NM_001302268	14339.0	Mm.324588	NM_010241	ENSMUSG00000031667	Aktip	AL023020|Fif|Ft|Ft1|Fts	thymoma viral proto-oncogene 1 interacting protein	protein-coding	11.0	33.0	17.5	15.0	37.0	33.0
Merged-chr12-110840969-4	chr12	110840440	110841440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011973)	promoter-TSS (NM_011973)	-1.0	NM_011973	26448.0	Mm.140948	NM_011973	ENSMUSG00000056458	Mok	RAGE1|Rage|Stk30	MOK protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20741683-4	chr18	20741184	20742184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	4720.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31564507-4	chr17	31564001	31565001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016670)	promoter-TSS (NM_016670)	-272.0	NR_027493	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55092468-4	chr14	55091980	55092980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039198)	promoter-TSS (NM_001039198)	-432.0	NM_001039198	239102.0	Mm.441113	NM_001039198	ENSMUSG00000040721	Zfhx2	ZFH-5	zinc finger homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21646283-4	chr19	21645809	21646809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025423, intron 1 of 3)	MTD|LTR|ERVL-MaLR	6482.0	NM_025423	66206.0	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40229956-4	chr10	40229462	40230462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042556, intron 7 of 9)	intron (NM_001042556, intron 7 of 9)	17017.0	NM_001042556	67239.0	Mm.11480	NM_023323	ENSMUSG00000038510	Rpf2	2810470K21Rik|AU040229|AU043242|Bxdc1	ribosome production factor 2 homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-117907727-4	chr6	117907220	117908220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166428)	intron (NM_133834, intron 1 of 3)	-84.0	NM_001166428	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34263213-4	chr17	34262723	34263723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207105)	promoter-TSS (NM_207105)	-4.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	145.5	582.0	365.0	210.0	610.0	441.5
Merged-chr1-193875476-2	chr1	193874976	193875976	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	347283.0	NR_040477	74942.0	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95632914-4	chr3	95632415	95633415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019561)	TTS (NM_019561)	7935.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84951613-4	chr18	84951109	84952109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025969)	promoter-TSS (NM_025969)	-85.0	NM_025969	67105.0	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	translocase of inner mitochondrial membrane 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32108107-4	chr19	32107589	32108589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4949.0	NM_018830	54447.0	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	54.0	112.5	74.0	44.0	94.0	77.5
Merged-chr18-82911723-4	chr18	82911209	82912209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183033, intron 1 of 5)	intron (NM_183033, intron 1 of 5)	830.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-63611343-4	chr15	63610840	63611840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-131732.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	39.0	152.0	87.0	110.0	139.5	114.5
Merged-chr2-151494148-4	chr2	151493625	151494625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291074)	promoter-TSS (NM_001291074)	-57.0	NM_001291074	386649.0	Mm.419479	NM_198326	ENSMUSG00000027455	Nsfl1c	Munc-18c|Stxbp3a|p47	NSFL1 (p97) cofactor (p47)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-17659143-4	chr14	17658634	17659634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1826.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127211654-4	chr10	127211175	127212175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054097)	promoter-TSS (NM_054097)	-53.0	NM_001359280	117150.0	Mm.22682	NM_054097	ENSMUSG00000025417	Pip4k2c	Pip5k2c	phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92504411-4	chr5	92503925	92504925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	1232.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118522283-2	chr2	118521783	118522783	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22304.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	1.5	3.0	1.5	0.0	1.5	1.5
Merged-chr6-120836168-4	chr6	120835670	120836670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153516)	promoter-TSS (NM_153516)	-60.0	NM_153516	94044.0	Mm.27990	NM_153516	ENSMUSG00000009112	Bcl2l13	BCL-RAMBO|E430016C20Rik|Mil-1|Mil1	BCL2-like 13 (apoptosis facilitator)	protein-coding	28.5	107.5	62.0	11.0	90.5	63.5
Merged-chr14-16249353-4	chr14	16248891	16249891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362433)	promoter-TSS (NM_001362433)	77.0	NM_001362432	59007.0	Mm.258381	NM_021504	ENSMUSG00000021785	Ngly1	1110002C09Rik|PNGase|Png1	N-glycanase 1	protein-coding	32.0	61.0	68.5	25.0	66.5	49.5
Merged-chr10-93160668-4	chr10	93160163	93161163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146239)	promoter-TSS (NM_146239)	-213.0	NM_146239	237459.0	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding	134.0	344.5	269.0	125.5	285.0	268.0
Merged-chr18-36513013-4	chr18	36512500	36513500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010415, intron 2 of 5)	intron (NM_010415, intron 2 of 5)	2805.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	32.5	104.5	93.0	51.0	62.0	72.5
Merged-chr19-12573434-4	chr19	12572935	12573935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346545)	promoter-TSS (NM_001346545)	-75.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	166.0	411.5	262.0	126.5	326.5	233.5
Merged-chr4-151996313-4	chr4	151995814	151996814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172705)	promoter-TSS (NM_172705)	-135.0	NM_172705	230936.0	Mm.25582	NM_172705	ENSMUSG00000047777	Phf13	BC029632|Phf5|SPOC1	PHD finger protein 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-16014-1	chr4	15514	16514	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-3156069.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100624026-4	chr11	100623510	100624510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028024, intron 1 of 3)	intron (NM_028024, intron 1 of 3)	1055.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59864086-4	chr4	59863594	59864594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 2 of 8)	intron (NM_172468, intron 2 of 8)	50962.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	5.5	13.0	18.0	5.5	13.0	18.0
Merged-chr8-126759913-3	chr8	126759434	126760434	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89086.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	22.0	44.0	17.0	25.0	55.5	24.5
Merged-chr2-59240174-4	chr2	59239663	59240663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	79313.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-37242759-4	chr12	37242280	37243280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178767, intron 1 of 12)	intron (NM_178767, intron 1 of 12)	1141.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	112.0	260.5	150.5	61.0	174.5	107.0
Merged-chr13-103919423-4	chr13	103918909	103919909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005868, intron 1 of 26)	intron (NM_001005868, intron 1 of 26)	1177.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33185051-4	chr16	33184550	33185550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176840)	promoter-TSS (NM_176840)	-21.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70523167-4	chr8	70522654	70523654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029366)	promoter-TSS (NM_029366)	26.0	NM_029366	75620.0	Mm.482129	NM_029366	ENSMUSG00000055553	Kxd1	0610030B01Rik|2810422J05Rik|C78305	KxDL motif containing 1	protein-coding	80.5	169.5	128.0	82.5	162.0	131.0
Merged-chr9-44767809-4	chr9	44767288	44768288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145985)	promoter-TSS (NM_145985)	20.0	NM_145985	213827.0	Mm.371682	NM_145985	ENSMUSG00000032096	Arcn1	4632432M07Rik|nur17	archain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99332272-2	chr5	99331772	99332772	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-79345.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102350805-4	chr15	102350305	102351305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153416)	promoter-TSS (NM_153416)	-22.0	NR_155425	102640093.0	Mm.385825	NR_155425	ENSMUSG00000116402	Gm36246	-	predicted gene, 36246	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111996609-4	chr10	111996112	111997112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028608, intron 1 of 5)	intron (NM_028608, intron 1 of 5)	652.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9899598-4	chr19	9899097	9900097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016692)	promoter-TSS (NM_016692)	-64.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	33.0	75.5	54.5	44.5	56.5	67.0
Merged-chr4-103119364-4	chr4	103118868	103119868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039081)	promoter-TSS (NM_001039081)	-22.0	NM_001039081	71148.0	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96305151-4	chr3	96304637	96305637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	-11168.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106388099-4	chr11	106387601	106388601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5320.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58183785-4	chr11	58183266	58184266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001135115)	promoter-TSS (NM_001135115)	-77.0	NM_001135115	631323.0	Mm.394103	NM_001135115		Gm12250	Irgb10	predicted gene 12250	protein-coding	56.0	116.5	75.5	39.0	96.5	60.5
Merged-chr19-10510998-4	chr19	10510482	10511482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025333, intron 3 of 3)	MLT1E2|LTR|ERVL-MaLR	14227.0	NM_025333	66072.0	Mm.180063	NM_025333	ENSMUSG00000024668	Sdhaf2	0610038F07Rik|AA407634|AW049997	succinate dehydrogenase complex assembly factor 2	protein-coding	29.5	108.5	37.0	16.5	52.0	29.0
Merged-chr17-56304194-4	chr17	56303710	56304710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111080)	promoter-TSS (NM_001111080)	-103.0	NM_001111078	18140.0	Mm.42196	NM_010931	ENSMUSG00000001228	Uhrf1	AL022808|ICBP90|Np95|RNF106	ubiquitin-like, containing PHD and RING finger domains, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116843540-4	chr11	116843057	116844057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033398)	promoter-TSS (NM_033398)	42.0	NM_028865	74319.0	Mm.429312	NM_028865	ENSMUSG00000090266	Mettl23	1110005A03Rik|1500035B17Rik|4933424L15Rik	methyltransferase like 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156809789-2	chr2	156809289	156810289	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30218.0	NM_001291124	228839.0	Mm.315625	NM_173396	ENSMUSG00000062175	Tgif2	4921501K24|5730599O09Rik|C80753|C81206	TGFB-induced factor homeobox 2	protein-coding	0.0	11.0	2.0	0.0	5.5	1.0
Merged-chr1-91053405-1	chr1	91052905	91053905	+	1000.0	f0_balb.idr	promoter-TSS (NM_001310732)	promoter-TSS (NM_001310732)	-39.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141456951-4	chr7	141456452	141457452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028142, intron 2 of 9)	intron (NR_028142, intron 2 of 9)	1764.0	NM_001163689	66853.0	Mm.29998	NM_025802	ENSMUSG00000025509	Pnpla2	0610039C21Rik|1110001C14Rik|Atgl|TTS-2.2	patatin-like phospholipase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-40540820-4	chr3	40540327	40541327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175515)	promoter-TSS (NM_175515)	60.0	NM_175515	380614.0	Mm.105309	NM_175515	ENSMUSG00000060798	Intu	9230116I04Rik|9430087H23Rik|Pdzd6|Pdzk6|mKIAA1284	inturned planar cell polarity protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-36006456-4	chr19	36005968	36006968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360298, intron 1 of 2)	MER54A|LTR|ERVL	50892.0	NM_001360318	15566.0	Mm.254266	NM_008315	ENSMUSG00000024798	Htr7	5-HT-X|5-HT7	5-hydroxytryptamine (serotonin) receptor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-74216098-4	chr18	74215599	74216599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028868)	promoter-TSS (NM_028868)	-113.0	NM_028868	74322.0	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	27.5	90.0	58.0	30.0	77.5	50.0
Merged-chr5-63967648-6	chr5	63967104	63968104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145923, intron 1 of 6)	intron (NM_145923, intron 1 of 6)	1293.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138209703-3	chr5	138209202	138210202	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C-int|LTR|ERVK	15388.0	NM_177878	330216.0	Mm.19719	NM_177878	ENSMUSG00000049285	Mblac1	-	metallo-beta-lactamase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118811290-4	chr10	118810793	118811793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57610.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65698392-6	chr5	65697947	65698947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081321)	promoter-TSS (NM_001081321)	-591.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	80.0	131.5	91.5	79.5	200.0	136.0
Merged-chr1-191071700-4	chr1	191071176	191072176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198654, intron 4 of 5)	intron (NM_198654, intron 4 of 5)	8655.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	51.0	183.5	100.0	35.0	107.5	64.5
Merged-chr6-125096080-4	chr6	125095554	125096554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145979)	promoter-TSS (NM_145979)	73.0	NM_001346610	107932.0	Mm.333388	NM_145979	ENSMUSG00000063870	Chd4	9530019N15Rik|AA617397|BC005710|D6Ertd380e|Mi-2beta|mKIAA4075	chromodomain helicase DNA binding protein 4	protein-coding	13.0	42.5	27.5	13.5	24.0	34.5
Merged-chr3-126655274-4	chr3	126654771	126655771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	58320.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	20.0	41.0	61.0	38.0	55.5	51.5
Merged-chr2-29772317-4	chr2	29771808	29772808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10780.0	NM_001177392	433416.0	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	-	predicted gene 13547	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-31386141-4	chr9	31385659	31386659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172766)	promoter-TSS (NM_172766)	-33.0	NM_172766	235134.0	Mm.238146	NM_172766	ENSMUSG00000042185	Nfrkb	A530090G11Rik	nuclear factor related to kappa B binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167589482-4	chr2	167588997	167589997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	42508.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80386306-2	chr10	80385806	80386806	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198615, intron 1 of 1)	intron (NM_198615, intron 1 of 1)	1345.0	NM_198615	237400.0	Mm.268389	NM_198615	ENSMUSG00000048696	Mex3d	BC059858|Rkhd1	mex3 RNA binding family member D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53980408-4	chr11	53979821	53980821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019723)	promoter-TSS (NM_019723)	12.0	NM_001362202	56517.0	Mm.154284	NM_019723	ENSMUSG00000063652	Slc22a21	Octn3|Slc22a9	solute carrier family 22 (organic cation transporter), member 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111103335-4	chr10	111102848	111103848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61454.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32813585-2	chr16	32813066	32814066	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3120.0	NM_001256309	381043.0	Mm.303864	NM_001256309	ENSMUSG00000094430	Smbd1	Gm1743|Gm933	somatomedin B domain containing 1	protein-coding	1.0	18.5	8.5	15.0	21.5	14.0
Merged-chr7-127850316-4	chr7	127849817	127850817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8509.0	NM_009294	20909.0	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54817641-4	chr6	54817132	54818132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199143, intron 1 of 4)	intron (NM_199143, intron 1 of 4)	716.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160066997-3	chr2	160066510	160067510	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50357.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	11.0	6.5	20.0	23.0	39.0	26.0
Merged-chr10-40372522-4	chr10	40372016	40373016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291816, intron 1 of 11)	intron (NM_001291816, intron 1 of 11)	23208.0	NM_001291816	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32643685-2	chr11	32643185	32644185	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271349, intron 1 of 11)	intron (NM_001271349, intron 1 of 11)	1130.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50772774-4	chr15	50772262	50773262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	116287.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	1.5	16.0	12.0	0.0	0.0	4.5
Merged-chr10-68732414-4	chr10	68731914	68732914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	8668.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-19554215-4	chr2	19553687	19554687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027600)	promoter-TSS (NM_027600)	-277.0	NM_027600	70909.0	Mm.158488	NM_027600	ENSMUSG00000026734	4921504E06Rik	4921522E24Rik	RIKEN cDNA 4921504E06 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-121327884-4	chr1	121327399	121328399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271531)	promoter-TSS (NM_001271531)	125.0	NM_001357251	72999.0	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	22.0	31.5	61.5	32.5	35.5	20.5
Merged-chr5-139327959-4	chr5	139327456	139328456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-2492.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116013876-4	chr6	116013370	116014370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18865.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121291700-4	chr3	121291202	121292202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024178)	promoter-TSS (NM_024178)	-38.0	NR_155539	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	44.0	128.0	88.0	58.0	69.0	78.0
Merged-chr15-59004273-4	chr15	59003773	59004773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	70463.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121286073-5	chr9	121285580	121286580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8908.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	5.5	36.5	26.5	9.5	36.0	12.5
Merged-chr8-13159571-3	chr8	13159071	13160071	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010684, intron 1 of 8)	L1MDb|LINE|L1	410.0	NM_010684	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136886287-4	chr4	136885786	136886786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009777)	promoter-TSS (NM_009777)	-109.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	198.0	520.5	475.0	230.0	528.5	263.5
Merged-chr1-64928713-4	chr1	64928233	64929233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 2 of 7)	intron (NM_001039493, intron 2 of 7)	28091.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47010106-4	chr17	47009609	47010609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146078, intron 1 of 46)	CpG	423.0	NM_146078	224826.0	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24730473-2	chr5	24729973	24730973	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081441, exon 1 of 6)	5' UTR (NM_001081441, exon 1 of 6)	207.0	NM_001081441	269633.0	Mm.392539	NM_026621	ENSMUSG00000055235	Wdr86	2810046M22Rik|BC059069	WD repeat domain 86	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43382050-4	chr4	43381704	43382704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037709, intron 1 of 11)	CpG	222.0	NM_001037709	100213.0	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	160.0	273.0	219.0	76.5	184.5	152.0
Merged-chr13-34076905-4	chr13	34076409	34077409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009450, intron 1 of 3)	intron (NM_009450, intron 1 of 3)	1099.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	2.5	17.5	1.0	0.0	4.5	1.5
Merged-chr6-117900337-2	chr6	117899837	117900837	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166432)	promoter-TSS (NM_001166432)	-3.0	NM_001166432	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92697414-4	chr16	92696926	92697926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009821)	promoter-TSS (NM_009821)	-97.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24392657-2	chr5	24392157	24393157	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001002897)	promoter-TSS (NM_001002897)	-514.0	NM_001002897	213948.0	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80169591-4	chr18	80169085	80170085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16654.0	NR_131039	105246506.0	Mm.392326	NR_131039		LOC105246506	-	uncharacterized LOC105246506	ncRNA	39.5	64.5	57.0	34.5	63.0	54.5
Merged-chr6-122952596-4	chr6	122952088	122953088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204241)	promoter-TSS (NM_001204241)	-56.0	NM_153197	73149.0	Mm.25684	NM_153197	ENSMUSG00000043832	Clec4a3	3110037K17Rik|Dcir3	C-type lectin domain family 4, member a3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113074335-6	chr12	113073842	113074842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361919)	promoter-TSS (NM_001361919)	-160.0	NM_001361919	75671.0	Mm.23377	NM_029381	ENSMUSG00000012211	Tex22	1700028O09Rik|AV210422|Tep22	testis expressed gene 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51638090-4	chr11	51637593	51638593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2197.0	NM_025346	66089.0	Mm.288183	NM_025346	ENSMUSG00000001054	Rmnd5b	0610039K22Rik|Gid2	required for meiotic nuclear division 5 homolog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83038826-4	chr6	83038345	83039345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013586, intron 4 of 13)	intron (NM_013586, intron 4 of 13)	4621.0	NM_013586	16950.0	Mm.380433	NM_013586	ENSMUSG00000000693	Loxl3	Lor2|Loxl2	lysyl oxidase-like 3	protein-coding	14.0	35.0	25.5	16.0	28.5	24.0
Merged-chr8-92818348-4	chr8	92817837	92818837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8960.0	NM_008610	17390.0	Mm.29564	NM_008610	ENSMUSG00000031740	Mmp2	Clg4a|GelA|MMP-2	matrix metallopeptidase 2	protein-coding	9.5	4.5	2.5	3.0	3.0	4.5
Merged-chr10-121367291-4	chr10	121366770	121367770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 1 of 13)	intron (NM_029364, intron 1 of 13)	2180.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	24.5	32.5	38.0	18.5	60.0	19.5
Merged-chr18-60727612-4	chr18	60727104	60728104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348103)	promoter-TSS (NM_001348103)	-38.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	1.0	1.5	5.0	1.0	1.5	6.0
Merged-chr3-116861848-4	chr3	116861358	116862358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009146, intron 1 of 16)	intron (NM_009146, intron 1 of 16)	178.0	NM_009146	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-6648814-4	chr13	6648326	6649326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291071)	promoter-TSS (NM_001291071)	-55.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-31214151-1	chr8	31213651	31214651	+	1000.0	f1_c57bl6.idr	intron (NM_001286425, intron 3 of 3)	intron (NM_001286425, intron 3 of 3)	26820.0	NM_001286425	171167.0	Mm.334477	NM_134161	ENSMUSG00000046152	Fut10	fuc-TX|fut10A	fucosyltransferase 10	protein-coding	0.0	2.0	4.0	7.5	2.5	4.5
Merged-chr6-143114682-4	chr6	143114167	143115167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153819, intron 7 of 8)	ORR1E|LTR|ERVL-MaLR	-14515.0	NM_001109688	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25246591-2	chr7	25246091	25247091	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010155, intron 1 of 3)	intron (NM_010155, intron 1 of 3)	4167.0	NM_010155	13875.0	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-43353193-4	chr11	43352700	43353700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21261.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-186575884-4	chr1	186575393	186576393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17212.0	NR_131158	320449.0	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101266015-4	chr15	101265518	101266518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010444)	promoter-TSS (NM_010444)	-828.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	13.0	24.0	10.0	5.0	39.5	8.0
Merged-chr11-79278768-4	chr11	79278256	79279256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24061.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	13.5	49.0	27.5	25.0	50.5	40.0
Merged-chr4-19703304-2	chr4	19702804	19703804	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_074090, intron 1 of 24)	intron (NR_074090, intron 1 of 24)	5700.0	NM_177327	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-104507257-4	chr2	104506755	104507755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-12766.0	NM_001145824	15259.0	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	0.0	2.0	1.0	1.0	2.0	4.5
Merged-chr8-122434824-2	chr8	122434324	122435324	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_138656, exon 9 of 10)	exon (NM_138656, exon 9 of 10)	-1884.0	NM_007806	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101546476-2	chr7	101545976	101546976	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9326.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	1.5	29.5	43.0	22.0	23.5	35.0
Merged-chr14-103376955-4	chr14	103376459	103377459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30159.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96830064-4	chr11	96829554	96830554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130450)	promoter-TSS (NM_001130450)	-86.0	NM_008686	18023.0	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	28.0	85.0	54.0	25.5	93.0	52.5
Merged-chr2-166996364-4	chr2	166995878	166996878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011490)	promoter-TSS (NM_011490)	-79.0	NM_001109905	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-134556209-4	chr7	134555705	134556705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-114482.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	4.0	0.0	2.0	0.0	2.0	9.5
Merged-chr15-35757233-4	chr15	35756726	35757726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177151, intron 35 of 61)	intron (NM_177151, intron 35 of 61)	-96179.0	NR_030606	100124469.0		NR_030606	ENSMUSG00000077890	Mir875	Mirn875|mir-875|mmu-mir-875	microRNA 875	ncRNA	14.5	14.5	17.0	12.0	20.0	30.5
Merged-chr4-45084630-4	chr4	45084117	45085117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024142)	promoter-TSS (NM_001024142)	-13.0	NM_001024142	269529.0	Mm.389552	NM_001024142	ENSMUSG00000048232	Fbxo10	FBX10|Gm634	F-box protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-109616547-4	chr7	109616069	109617069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037617)	promoter-TSS (NR_037617)	-1.0	NR_037617	76954.0	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122565619-4	chr6	122565122	122566122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	11813.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62281457-4	chr11	62280970	62281970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029704)	promoter-TSS (NM_029704)	-3.0	NM_028360	72795.0	Mm.489722	NM_028360	ENSMUSG00000042298	Ttc19	2010204O13Rik|2810460C24Rik|AI505442	tetratricopeptide repeat domain 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38876338-4	chr6	38875850	38876850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001294144)	promoter-TSS (NM_001294144)	-160.0	NM_001294143	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44800228-4	chr13	44799720	44800720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205043, intron 1 of 17)	intron (NM_001205043, intron 1 of 17)	68949.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-77518076-4	chr8	77517599	77518599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030113)	promoter-TSS (NM_030113)	-192.0	NM_030113	78514.0	Mm.165974	NM_030113	ENSMUSG00000037148	Arhgap10	A930033B01Rik|PSGAP-m|PSGAP-s	Rho GTPase activating protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156674898-4	chr1	156674424	156675424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023141)	promoter-TSS (NM_023141)	-585.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	121.5	200.5	129.0	125.0	210.5	154.0
Merged-chr6-83273946-4	chr6	83273439	83274439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166067, intron 13 of 24)	intron (NM_001166067, intron 13 of 24)	36564.0	NM_001166067	232156.0	Mm.333189	NM_001166067	ENSMUSG00000068323	Slc4a5	C330006M16|C330016K18Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69669745-4	chr3	69669237	69670237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-52318.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	64.5	99.0	118.0	47.5	68.0	116.0
Merged-chr18-60716907-4	chr18	60716394	60717394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	10672.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86892446-6	chr12	86891859	86892859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7545.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30589563-4	chr7	30589046	30590046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290573)	promoter-TSS (NM_001290573)	166.0	NR_106134	102465774.0		NR_106134	ENSMUSG00000098553	Mir3569	Gm27279|mmu-mir-3569	microRNA 3569	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4211267-4	chr12	4210771	4211771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 19 of 21)	intron (NM_001159537, intron 19 of 21)	22694.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105055285-2	chr5	105054785	105055785	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1724.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-33589528-2	chr5	33589028	33590028	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37983.0	NM_001359461	74504.0	Mm.294695	NM_178390	ENSMUSG00000037339	Fam53a	2410018C17Rik|5430419M09Rik|Dntnp	family with sequence similarity 53, member A	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr7-31115753-4	chr7	31115273	31116273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008281)	promoter-TSS (NM_008281)	-447.0	NM_001110252	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	68.5	171.0	107.0	83.0	222.0	114.0
Merged-chr14-99046280-4	chr14	99045792	99046792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175245)	promoter-TSS (NM_175245)	-85.0	NR_153765	77744.0	Mm.23503	NM_175265	ENSMUSG00000022070	Bora	6720463M24Rik|AI317232	bora, aurora kinase A activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-41788837-4	chr15	41788394	41789394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130885)	promoter-TSS (NM_130885)	-101.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23803562-4	chr17	23803071	23804071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175229, intron 1 of 13)	CpG	384.0	NM_175229	75956.0	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	120.0	256.5	229.5	106.0	331.0	232.0
Merged-chr7-4915401-4	chr7	4914889	4915889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_170759, exon 1 of 3)	5' UTR (NM_170759, exon 1 of 3)	172.0	NM_170759	232816.0	Mm.27442	NM_170759	ENSMUSG00000074406	Zfp628	Zec|Znf628	zinc finger protein 628	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116264201-4	chr6	116263695	116264695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001309446)	promoter-TSS (NM_001309446)	-24.0	NM_001309446	67492.0	Mm.272772	NM_001081317	ENSMUSG00000042213	Zfand4	Anubl1	zinc finger, AN1-type domain 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29397660-2	chr17	29397160	29398160	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	36746.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	15.0	26.0	21.0	1.0	9.0	10.5
Merged-chr17-63921797-4	chr17	63921291	63922291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001286415, exon 4 of 18)	exon (NM_001286415, exon 4 of 18)	-16181.0	NM_008000	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11690258-4	chr11	11689637	11690637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301866)	promoter-TSS (NM_001301866)	-40.0	NM_001301865	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21148547-4	chr14	21148062	21149062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134079, intron 3 of 10)	intron (NM_134079, intron 3 of 10)	72410.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	4.5	1.5	7.0	2.0	16.0	6.5
Merged-chr3-144204695-2	chr3	144204195	144205195	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010723, intron 1 of 4)	CpG	560.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34028111-4	chr17	34027613	34028613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013543)	promoter-TSS (NM_013543)	-58.0	NM_013543	14979.0	Mm.275452	NM_013543	ENSMUSG00000073422	H2-Ke6	D17H6S112E|H-2Ke6|Hsd17b8|Ke-6|Ke6|Ring2	H2-K region expressed gene 6	protein-coding	32.5	90.5	37.5	31.5	58.0	30.5
Merged-chr4-136120212-4	chr4	136119712	136120712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23610.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	6.0	30.5	24.0	14.5	22.5	29.0
Merged-chr13-74759359-4	chr13	74758871	74759871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301153, intron 3 of 31)	intron (NM_001301153, intron 3 of 31)	11365.0	NM_001301156	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-50111435-4	chr18	50110936	50111936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16765.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	24.5	46.0	37.5	31.0	71.0	65.0
Merged-chr10-118804820-4	chr10	118804330	118805330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64073.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124756867-3	chr8	124756362	124757362	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5053.0	NM_001081120	69627.0	Mm.271600	NM_001081120	ENSMUSG00000043068	Fam89a	2310031A18Rik	family with sequence similarity 89, member A	protein-coding	7.5	4.5	1.5	16.0	35.5	16.0
Merged-chr7-25396155-4	chr7	25395695	25396695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010719)	promoter-TSS (NM_010719)	-208.0	NM_010719	16890.0	Mm.158548	NM_010719	ENSMUSG00000003123	Lipe	4933403G17Rik|HSL	lipase, hormone sensitive	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72321956-1	chr8	72321456	72322456	+	1000.0	f1_c57bl6.idr	TTS (NM_008452)	TTS (NM_008452)	2894.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	153.5	338.5	229.0	94.5	255.0	151.5
Merged-chr5-122820964-4	chr5	122820462	122821462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042491, intron 1 of 16)	CpG	380.0	NM_021505	59008.0	Mm.332667	NM_021505	ENSMUSG00000029472	Anapc5	2510006G12Rik|AA408751|AA536819|AA986414|APC5|Anpc5	anaphase-promoting complex subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-68472076-4	chr2	68471556	68472556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016866)	promoter-TSS (NM_016866)	-75.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61930324-4	chr11	61929825	61930825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019921)	promoter-TSS (NM_019921)	-68.0	NM_019921	56697.0	Mm.274404	NM_019921	ENSMUSG00000047804	Akap10	1500031L16Rik|B130049N18Rik|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119937592-4	chr9	119937089	119938089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028976)	promoter-TSS (NM_028976)	-17.0	NM_028735	74052.0	Mm.189573	NM_028735	ENSMUSG00000032514	Ttc21a	4921538N17Rik|AA387572|Thm2	tetratricopeptide repeat domain 21A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-21808330-3	chr3	21807828	21808828	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-268324.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132112478-4	chr2	132111962	132112962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	32646.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111054719-2	chr9	111054219	111055219	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001302376)	TTS (NM_001302376)	2525.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8912408-4	chr10	8911896	8912896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26326.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	28.0	15.5	25.5	24.0	12.5	28.0
Merged-chr18-46452308-4	chr18	46451815	46452815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13501.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	1.5	6.5	8.0	1.0	11.0	6.5
Merged-chr4-59380040-3	chr4	59379542	59380542	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 7 of 16)	intron (NM_001163288, intron 7 of 16)	58591.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr19-46486151-2	chr19	46485651	46486651	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_015752, exon 12 of 12)	3' UTR (NM_015752, exon 12 of 12)	-15497.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-115838405-4	chr4	115837899	115838899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021461)	promoter-TSS (NM_021461)	-799.0	NM_001285488	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	22.5	54.0	44.0	15.5	66.5	33.5
Merged-chr15-58746349-4	chr15	58745856	58746856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77071.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-135228515-4	chr6	135227993	135228993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028982, exon 10 of 13)	exon (NM_028982, exon 10 of 13)	19391.0	NM_001080552	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	19.5	39.5	31.0	23.0	10.0	2.5
Merged-chr2-71505066-4	chr2	71504567	71505567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025633, intron 1 of 9)	intron (NM_025633, intron 1 of 9)	-24378.0	NM_010053	13390.0	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81856273-4	chr15	81855775	81856775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020507, intron 1 of 1)	CpG	2051.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	0.0	3.0	1.5	0.0	3.0	1.5
Merged-chr2-26964376-4	chr2	26963863	26964863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207234)	promoter-TSS (NM_207234)	23.0	NM_207234	227656.0	Mm.291874	NM_207234	ENSMUSG00000052406	Rexo4	Gm111|Rex4|Xpmc2h	REX4, 3'-5' exonuclease	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-106009532-2	chr12	106009032	106010032	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011705)	promoter-TSS (NM_011705)	-731.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39171294-4	chr10	39170791	39171791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7497.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59744154-2	chr15	59743654	59744654	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	50805.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81015064-4	chr10	81014564	81015564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010319)	promoter-TSS (NM_010319)	-139.0	NM_010319	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-40304605-4	chr8	40304111	40305111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3318.0	NR_106126	102466237.0		NR_106126	ENSMUSG00000098431	Mir7666	Gm27915|mmu-mir-7666	microRNA 7666	ncRNA	16.5	55.5	34.5	7.0	7.5	16.0
Merged-chr10-57778112-2	chr10	57777612	57778612	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6811.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79305835-4	chr11	79305319	79306319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34073.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	38.5	64.0	94.0	37.0	61.5	62.0
Merged-chr9-53254542-2	chr9	53254042	53255042	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6430.0	NM_029936	77591.0	Mm.133560	NM_029936	ENSMUSG00000053289	Ddx10	4632415A01Rik|AI646054	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119779528-4	chr8	119779032	119780032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1116.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119211438-2	chr2	119210938	119211938	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164827, exon 5 of 10)	exon (NM_001164827, exon 5 of 10)	-2643.0	NM_139139	69408.0	Mm.222241	NM_139139	ENSMUSG00000034278	Dnajc17	1700025B16Rik|C87112|D9Bwg1371e	DnaJ heat shock protein family (Hsp40) member C17	protein-coding	0.0	0.0	1.5	0.0	0.0	0.5
Merged-chr11-120715407-2	chr11	120714907	120715907	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153545, intron 4 of 17)	intron (NM_153545, intron 4 of 17)	1454.0	NM_153545	217366.0	Mm.347545	NM_153545	ENSMUSG00000025145	Lrrc45	BC023296	leucine rich repeat containing 45	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180589390-4	chr2	180588995	180589995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031373)	promoter-TSS (NM_031373)	88.0	NM_031373	72075.0	Mm.250418	NM_031373	ENSMUSG00000049401	Ogfr	2010013E17Rik	opioid growth factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118135429-4	chr11	118134940	118135940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-6221.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	7.0	0.0	7.0	0.0	0.0	1.0
Merged-chr17-29000631-4	chr17	29000131	29001131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357173, intron 1 of 13)	MTE2a|LTR|ERVL-MaLR	7364.0	NM_134115	106504.0	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	9.0	44.5	29.0	31.0	28.5	29.5
Merged-chr1-78666158-4	chr1	78665639	78666639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001136226, exon 4 of 4)	exon (NM_001136226, exon 4 of 4)	7699.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	0.0	5.5	3.0	0.0	4.0	0.0
Merged-chr19-5571995-4	chr19	5571472	5572472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033448)	TTS (NM_001033448)	3948.0	NM_001033448	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114893547-2	chr6	114893047	114894047	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	28274.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-34783824-4	chr12	34783330	34784330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	133265.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	47.0	110.5	59.5	36.5	96.5	52.5
Merged-chr4-117127208-4	chr4	117126763	117127763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175030, intron 2 of 3)	intron (NM_175030, intron 2 of 3)	450.0	NM_175030	242646.0	Mm.358914	NM_175030	ENSMUSG00000047671	Tctex1d4	4833401D15Rik	Tctex1 domain containing 4	protein-coding	73.5	169.5	105.0	101.0	156.5	102.5
Merged-chr13-64161781-4	chr13	64161287	64162287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019986)	promoter-TSS (NM_019986)	-79.0	NM_019986	56541.0	Mm.40989	NM_019986	ENSMUSG00000021476	Habp4	4933413D03Rik|4933428J01Rik	hyaluronic acid binding protein 4	protein-coding	7.0	19.5	11.0	0.0	26.0	17.5
Merged-chr16-91728738-4	chr16	91728220	91729220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133679)	promoter-TSS (NM_133679)	82.0	NM_026994	66609.0	Mm.109823	NM_026994	ENSMUSG00000058240	Cryzl1	2210407J23Rik|2410006O11Rik|QOH-1	crystallin, zeta (quinone reductase)-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24423711-4	chr5	24423196	24424196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007668)	promoter-TSS (NM_007668)	-166.0	NM_007668	12568.0	Mm.298798	NM_007668	ENSMUSG00000028969	Cdk5	AW048668|Crk6	cyclin-dependent kinase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153791605-4	chr2	153791112	153792112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036629, intron 5 of 7)	intron (NR_036629, intron 5 of 7)	10733.0	NR_036629	100504221.0	Mm.246778	NM_177849	ENSMUSG00000044083	Efcab8	A630008I04|EG329541	EF-hand calcium binding domain 8	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50207757-2	chr11	50207257	50208257	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290769, intron 2 of 7)	intron (NM_001290769, intron 2 of 7)	3063.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64197992-4	chr15	64197479	64198479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 4 of 28)	intron (NM_001276461, intron 4 of 28)	114694.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	85.5	155.0	75.5	64.0	89.0	83.0
Merged-chr5-3647985-4	chr5	3647469	3648469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026033)	promoter-TSS (NM_026033)	-33.0	NM_026033	67210.0	Mm.178424	NM_026033	ENSMUSG00000007415	Gatad1	2310031E19Rik|2810047M21Rik|8430439A17Rik|9130430G15Rik|B330017N08Rik|Odag	GATA zinc finger domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82509815-2	chr18	82509315	82510315	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025245, intron 2 of 3)	intron (NM_001025245, intron 2 of 3)	34692.0	NM_010777	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30178513-4	chr2	30178017	30179017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172660)	promoter-TSS (NM_172660)	-58.0	NM_172660	227695.0	Mm.4449	NM_172660	ENSMUSG00000039660	Spout1	9930028P05|AL033358|CENP-32|D2Wsu81e	SPOUT domain containing methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3355246-4	chr12	3354710	3355710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-9922.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79886394-2	chr10	79885894	79886894	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015779)	promoter-TSS (NM_015779)	82.0	NM_015779	50701.0	Mm.262194	NM_015779	ENSMUSG00000020125	Elane	Ela2|F430011M15Rik|NE	elastase, neutrophil expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5605606-4	chr13	5605136	5606136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	252456.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19093269-4	chr7	19092756	19093756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_126095, exon 15 of 15)	non-coding (NR_126095, exon 15 of 15)	-1288.0	NM_011383	20475.0	Mm.3410	NM_011383	ENSMUSG00000040841	Six5	Dmahp|MDMAHP|TrexBF	sine oculis-related homeobox 5	protein-coding	0.5	8.0	7.0	3.0	15.5	4.5
Merged-chr16-17451950-4	chr16	17451460	17452460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277231)	promoter-TSS (NM_001277231)	-25.0	NM_001277231	12929.0	Mm.21048	NM_007764	ENSMUSG00000006134	Crkl	1110025F07Rik|AA589403|AI325100|Crkol	v-crk avian sarcoma virus CT10 oncogene homolog-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70945467-4	chr11	70944955	70945955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083331, intron 10 of 16)	intron (NM_001083331, intron 10 of 16)	24518.0	NM_172394	19069.0	Mm.288962	NM_172394	ENSMUSG00000040667	Nup88	Nup84|Prei2	nucleoporin 88	protein-coding	3.0	14.5	17.0	3.0	11.0	10.0
Merged-chr6-97504946-4	chr6	97504465	97505465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-17145.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	23.0	55.5	27.5	8.5	15.5	21.0
Merged-chr4-43260380-3	chr4	43259892	43260892	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081413, intron 37 of 39)	intron (NM_001081413, intron 37 of 39)	-6767.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	10.5	8.0	17.0	52.5	78.0	105.0
Merged-chr19-41382864-4	chr19	41382357	41383357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 1 of 16)	intron (NM_031376, intron 1 of 16)	2213.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	111.0	201.0	140.0	71.0	189.0	158.0
Merged-chr8-117322659-2	chr8	117322159	117323159	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-26511.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123519382-2	chr8	123518882	123519882	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018855, intron 1 of 10)	intron (NM_018855, intron 1 of 10)	547.0	NM_018855	104346.0	Mm.117265	NM_018855	ENSMUSG00000040220	Gas8	Gas11	growth arrest specific 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155200986-4	chr4	155200504	155201504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	21531.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	10.5	37.5	22.0	3.5	21.5	10.5
Merged-chr18-23884669-4	chr18	23884143	23885143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 7 of 7)	intron (NM_001162941, intron 7 of 7)	-70045.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21653070-4	chr19	21652588	21653588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025423)	promoter-TSS (NM_025423)	-221.0	NM_146096	226016.0	Mm.28796	NM_146096	ENSMUSG00000047368	Abhd17b	5730446C15Rik|Cgi67|Fam108b|Fam108b1	abhydrolase domain containing 17B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131199392-4	chr1	131198877	131199877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018750, intron 2 of 5)	intron (NM_018750, intron 2 of 5)	808.0	NM_001311094	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90301092-4	chr16	90300586	90301586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16583.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119524654-4	chr11	119524147	119525147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	23173.0	NM_008730	18164.0	Mm.5142	NM_008730	ENSMUSG00000025582	Nptx1	D11Bwg1004e|Np1	neuronal pentraxin 1	protein-coding	0.0	5.5	5.0	1.0	7.5	2.0
Merged-chr18-53266544-4	chr18	53266042	53267042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	20880.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62182449-4	chr18	62181956	62182956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013754, intron 1 of 1)	intron (NM_001013754, intron 1 of 1)	2356.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	16.0	132.0	72.5	21.0	142.0	67.0
Merged-chr16-55757708-3	chr16	55757219	55758219	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	64419.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44378099-4	chr11	44377596	44378596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21967.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	16.0	73.0	12.0	25.0	64.5	25.5
Merged-chr12-73687573-4	chr12	73687100	73688100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	102804.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68417990-4	chr11	68417487	68418487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-14138.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182909817-4	chr1	182909313	182910313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-44975.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-37926165-7	chr18	37925667	37926667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305981, intron 1 of 28)	intron (NM_001305981, intron 1 of 28)	9309.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88873016-2	chr15	88872516	88873516	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	10822.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36313551-2	chr1	36313051	36314051	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290726, intron 2 of 7)	intron (NM_001290726, intron 2 of 7)	5818.0	NM_001172205	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60350938-4	chr10	60350443	60351443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028732, intron 1 of 6)	intron (NM_028732, intron 1 of 6)	4092.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46553952-4	chr4	46553462	46554462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 2 of 11)	intron (NM_001164804, intron 2 of 11)	12478.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	18.5	16.5	32.5	5.5	24.5	23.0
Merged-chr8-71747309-3	chr8	71746810	71747810	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21629.0	NM_028715	74015.0	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	19.0	24.5	15.0	0.0	24.0	7.0
Merged-chr11-21048884-4	chr11	21048374	21049374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42450.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-66180040-4	chr2	66179535	66180535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55242.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44548896-4	chr7	44548398	44549398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011131)	promoter-TSS (NM_011131)	-83.0	NM_011131	18971.0	Mm.16549	NM_011131	ENSMUSG00000038644	Pold1	125kDa	polymerase (DNA directed), delta 1, catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44818269-2	chr7	44817769	44818769	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171024, intron 1 of 8)	B2_Mm2|SINE|B2	-1611.0	NR_033136	107503.0	Mm.389890	NM_030693	ENSMUSG00000038539	Atf5	AFTA|Atf7|Atfx|ODA-10	activating transcription factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151584873-7	chr1	151584368	151585368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	MTD|LTR|ERVL-MaLR	13495.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68378346-4	chr10	68377850	68378850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-57208.0	NR_045357	75148.0	Mm.23505	NR_045357	ENSMUSG00000112157	4930545H06Rik	-	RIKEN cDNA 4930545H06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56884982-4	chr17	56884464	56885464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030141, exon 11 of 14)	exon (NM_030141, exon 11 of 14)	9331.0	NM_030141	78625.0	Mm.160106	NM_030141	ENSMUSG00000024209	1700061G19Rik	1700026H02|AI507598	RIKEN cDNA 1700061G19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-54557688-4	chr1	54557191	54558191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163314)	promoter-TSS (NM_001163314)	-7.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	4.5	34.0	34.5	17.0	69.5	27.0
Merged-chr8-83972818-4	chr8	83972318	83973318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008854)	promoter-TSS (NM_008854)	-160.0	NM_008854	18747.0	Mm.19111	NM_008854	ENSMUSG00000005469	Prkaca	PKCD|Pkaca	protein kinase, cAMP dependent, catalytic, alpha	protein-coding	1.5	5.5	2.5	5.5	1.5	1.5
Merged-chr11-68474701-4	chr11	68474197	68475197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 2 of 18)	intron (NM_177320, intron 2 of 18)	-28322.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129607101-4	chr2	129606552	129607552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	11590.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	26.5	41.5	30.5	5.0	20.5	16.0
Merged-chr11-69323901-4	chr11	69323409	69324409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172560)	promoter-TSS (NM_172560)	-36.0	NM_172560	216846.0	Mm.28774	NM_172560	ENSMUSG00000032782	Cntrob	9830165K03Rik|Lip8|Nip2	centrobin, centrosomal BRCA2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84104973-4	chr8	84104479	84105479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357322)	promoter-TSS (NM_001357322)	-182.0	NM_172502	212123.0	Mm.260557	NM_172502	ENSMUSG00000037103	Dcaf15	6720484B16	DDB1 and CUL4 associated factor 15	protein-coding	10.0	12.0	13.0	19.0	21.5	10.0
Merged-chr4-132823672-2	chr4	132823172	132824172	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19462.0	NM_001355198	100336.0	Mm.105230	NM_146154	ENSMUSG00000028882	Ppp1r8	6330548N22Rik|AU044684|NIPP1	protein phosphatase 1, regulatory (inhibitor) subunit 8	protein-coding	7.0	21.0	20.5	4.0	9.5	11.0
Merged-chr10-83360141-4	chr10	83359623	83360623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026579)	promoter-TSS (NM_026579)	-98.0	NM_026579	28109.0	Mm.196210	NM_026579	ENSMUSG00000020255	D10Wsu102e	AI747614|C430041I18Rik	DNA segment, Chr 10, Wayne State University 102, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11333460-4	chr2	11332952	11333952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6037.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3626847-4	chr4	3626349	3627349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30D2_MM|LTR|ERV1	-29657.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	19.0	17.0	31.5	22.0	29.0	19.0
Merged-chr5-130255544-4	chr5	130255040	130256040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023248)	promoter-TSS (NM_023248)	-10.0	NM_023248	66711.0	Mm.280484	NM_023248	ENSMUSG00000025337	Sbds	4733401P19Rik|AI836084|CGI-97|SDS	SBDS ribosome maturation factor	protein-coding	0.5	49.5	23.5	4.5	43.5	24.5
Merged-chr10-45067142-4	chr10	45066642	45067642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011156)	promoter-TSS (NM_011156)	-72.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34673718-3	chr19	34673230	34674230	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172838, intron 5 of 6)	intron (NM_172838, intron 5 of 6)	32841.0	NM_008331	15957.0	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	3.0	2.0	3.5	0.0	13.0	5.5
Merged-chr5-146231080-4	chr5	146230553	146231553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359990)	promoter-TSS (NM_001359990)	-197.0	NM_001359990	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	32.5	82.0	61.0	27.5	43.0	50.5
Merged-chr7-116307928-2	chr7	116307428	116308428	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001305185, exon 3 of 27)	exon (NM_001305185, exon 3 of 27)	448.0	NM_001305185	233765.0	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120434832-2	chr8	120434332	120435332	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54034.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8854188-4	chr4	8853694	8854694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001277149, exon 29 of 38)	exon (NM_001277149, exon 29 of 38)	102870.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	11.0	4.5	2.0	9.5	9.0
Merged-chr2-36230497-4	chr2	36230003	36231003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008969)	promoter-TSS (NM_008969)	77.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79225783-4	chr8	79225287	79226287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026315, intron 2 of 5)	MTEa|LTR|ERVL-MaLR	22796.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-72526250-4	chr9	72525751	72526751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045735, intron 1 of 2)	MTC|LTR|ERVL-MaLR	5607.0	NR_045735	75115.0	Mm.280755	NR_045735	ENSMUSG00000096986	4930509E16Rik	-	RIKEN cDNA 4930509E16 gene	ncRNA	0.0	1.0	5.0	4.0	19.5	18.5
Merged-chr4-9131803-4	chr4	9131314	9132314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	-137479.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113627304-4	chr13	113626818	113627818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8754.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-110040532-4	chr6	110040058	110041058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-604954.0	NM_001346640	108073.0	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124478389-4	chr5	124477842	124478842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030259)	promoter-TSS (NM_030259)	-107.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85026824-4	chr8	85026305	85027305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026760)	promoter-TSS (NM_026760)	-28.0	NM_026760	68544.0	Mm.196005	NM_026760	ENSMUSG00000041203	Trir	1110002H14Rik|2310036O22Rik|AI854688	telomerase RNA component interacting RNase	protein-coding	34.5	137.0	74.0	57.5	156.0	114.5
Merged-chr6-148896190-4	chr6	148895674	148896674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301351)	promoter-TSS (NM_001301351)	63.0	NM_001301351	232560.0	Mm.150568	NM_181541	ENSMUSG00000030309	Caprin2	C1qdc1|Eeg1|rng140	caprin family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117287659-4	chr5	117287196	117288196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018858)	promoter-TSS (NM_018858)	-132.0	NM_018858	23980.0	Mm.195898	NM_018858	ENSMUSG00000032959	Pebp1	HCNP|Pbp|Pbp1|Pbpr|Rkip	phosphatidylethanolamine binding protein 1	protein-coding	28.5	50.5	47.0	13.0	28.5	29.0
Merged-chr11-75651329-7	chr11	75650839	75651839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008659)	promoter-TSS (NM_008659)	-170.0	NM_008659	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	183.5	358.0	321.0	162.0	392.0	280.5
Merged-chr8-120686732-2	chr8	120686232	120687232	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18412.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138973235-1	chr4	138972735	138973735	+	1000.0	f0_balb.idr	5' UTR (NM_029857, exon 1 of 17)	5' UTR (NM_029857, exon 1 of 17)	330.0	NM_029857	77056.0	Mm.122336	NM_029857	ENSMUSG00000041143	Tmco4	4632413C14Rik|AI430825	transmembrane and coiled-coil domains 4	protein-coding	57.0	117.0	87.5	57.0	92.0	101.5
Merged-chr12-54405266-4	chr12	54404762	54405762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13944.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-49358328-2	chr2	49357828	49358828	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93158.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104818596-4	chr3	104818095	104819095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008619)	promoter-TSS (NM_008619)	-32.0	NM_001163440	17454.0	Mm.1597	NM_008619	ENSMUSG00000002227	Mov10	C77703|Mov-10	Moloney leukemia virus 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-141727-1	chr1	141227	142227	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	3529771.0	NM_001011874	497097.0	Mm.454496	NM_001011874	ENSMUSG00000051951	Xkr4	AY534250|Gm210|XRG4|mKIAA1889	X-linked Kx blood group related 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-82859179-4	chr10	82858681	82859681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015762)	promoter-TSS (NM_015762)	-25.0	NM_001042513	50493.0	Mm.210155	NM_015762	ENSMUSG00000020250	Txnrd1	TR|TR1|TrxR1	thioredoxin reductase 1	protein-coding	143.0	213.5	219.0	134.0	269.0	204.0
Merged-chr9-95954787-4	chr9	95954273	95955273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011916)	promoter-TSS (NM_011916)	13.0	NM_011916	24127.0	Mm.291179	NM_011916	ENSMUSG00000032410	Xrn1	Dhm2|exo|mXrn1	5'-3' exoribonuclease 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42860276-4	chr10	42859755	42860755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172938)	promoter-TSS (NM_172938)	-257.0	NM_172938	268297.0	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	Scm polycomb group protein like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78532233-4	chr9	78531708	78532708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50484.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67636732-4	chr10	67636233	67637233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64774.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17394500-4	chr17	17394009	17395009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025934, exon 10 of 10)	3' UTR (NM_025934, exon 10 of 10)	-8177.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	30.0	63.0	18.0	19.5	31.5	25.5
Merged-chr3-130059781-2	chr3	130059281	130060281	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207209, intron 1 of 23)	intron (NM_207209, intron 1 of 23)	1126.0	NM_207209	99683.0	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99212859-4	chr9	99212332	99213332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	24407.0	NM_001244762	623459.0	Mm.260891	NM_001244762	ENSMUSG00000096316	Faiml	EG623459|Gm6432	Fas apoptotic inhibitory molecule like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-48750043-4	chr7	48749461	48750461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39042.0	NM_028031	243983.0	Mm.279116	NM_028031	ENSMUSG00000030471	Zdhhc13	2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4	zinc finger, DHHC domain containing 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180257289-4	chr2	180256789	180257789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025587)	promoter-TSS (NM_025587)	-90.0	NM_025587	66481.0	Mm.289669	NM_025587	ENSMUSG00000039001	Rps21	1810049N11Rik|2410030A14Rik	ribosomal protein S21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60260774-4	chr10	60260262	60261262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16866.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-145938522-3	chr3	145938018	145939018	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025555, intron 1 of 2)	CpG	504.0	NR_151446	66421.0	Mm.25137	NM_025555	ENSMUSG00000036873	2410004B18Rik	4930572C24Rik	RIKEN cDNA 2410004B18 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122928979-4	chr8	122928480	122929480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	80606.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92348941-4	chr5	92348402	92349402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021274)	promoter-TSS (NM_021274)	-13.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	104.0	279.0	136.5	55.0	175.5	119.5
Merged-chr5-135613053-4	chr5	135612541	135613541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19613.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	2.5	24.5	11.5	12.0	38.5	14.0
Merged-chr13-22041365-4	chr13	22040873	22041873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175656)	promoter-TSS (NM_175656)	-11.0	NM_175656	319158.0	Mm.14775	NM_175656	ENSMUSG00000060639	Hist1h4i	-	histone cluster 1, H4i	protein-coding	38.5	139.0	91.0	68.0	150.5	84.5
Merged-chr10-117376501-4	chr10	117375992	117376992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013391, intron 1 of 9)	CpG	481.0	NM_001013391	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	33.0	189.5	107.0	50.5	148.0	93.5
Merged-chr4-139198240-4	chr4	139197742	139198742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	4131.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	48.0	133.5	54.0	46.5	109.0	64.5
Merged-chr19-6364528-4	chr19	6363991	6364991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360393, intron 1 of 11)	CpG	801.0	NR_122118	22668.0	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65492957-4	chr5	65492446	65493446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133697)	promoter-TSS (NM_133697)	-111.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85386717-2	chr12	85386217	85387217	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12000.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50887379-2	chr15	50886879	50887879	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_032000, intron 1 of 5)	intron (NM_032000, intron 1 of 5)	1670.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	13.5	17.5	17.5	28.5	30.5	19.0
Merged-chr6-47454560-5	chr6	47454093	47455093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355550)	promoter-TSS (NM_001355550)	-164.0	NM_001355550	26965.0	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	Cul-1	cullin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117116130-4	chr5	117115593	117116593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178622)	promoter-TSS (NM_178622)	-100.0	NM_178622	71954.0	Mm.34456	NM_178622	ENSMUSG00000066900	Suds3	2400003N08Rik|2410008L21Rik|AU067672|mSds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	protein-coding	1.5	0.0	0.0	1.5	0.0	3.5
Merged-chr16-57280369-4	chr16	57279890	57280890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027651, intron 3 of 7)	intron (NM_027651, intron 3 of 7)	12461.0	NM_027651	71027.0	Mm.158563	NM_027651	ENSMUSG00000022753	Tmem30c	4933401B01Rik|4933409A18Rik|Cdc50c	transmembrane protein 30C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28381189-4	chr7	28380712	28381712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1984.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25040614-4	chr8	25040117	25041117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_031257, exon 12 of 12)	3' UTR (NM_031257, exon 12 of 12)	-1655.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	20.0	36.5	11.5	17.5	50.0	26.0
Merged-chr17-66101579-4	chr17	66101060	66102060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001278415)	promoter-TSS (NM_001278415)	-1.0	NM_028388	72900.0	Mm.2206	NM_028388	ENSMUSG00000024099	Ndufv2	2900010C23Rik	NADH dehydrogenase (ubiquinone) flavoprotein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32451510-4	chr2	32450982	32451982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164357)	promoter-TSS (NM_001164357)	-12.0	NM_146118	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9605629-4	chr4	9605133	9606133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177854, intron 3 of 11)	Tigger7|DNA|TcMar-Tigger	38084.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	7.5	21.0	13.5	6.5	4.0	1.5
Merged-chr11-11886559-4	chr11	11886056	11887056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190448, intron 1 of 14)	intron (NM_001190448, intron 1 of 14)	3852.0	NM_016672	13195.0	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-125389483-4	chr10	125388970	125389970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-60507.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	25.0	164.0	63.0	34.0	93.5	55.0
Merged-chr12-12249704-4	chr12	12249180	12250180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12459.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	28.0	61.5	36.5	18.0	37.0	35.0
Merged-chr9-47745811-3	chr9	47745322	47746322	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	72386.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	1.5	3.5	5.5	25.5	51.0	25.0
Merged-chr12-69197173-4	chr12	69196656	69197656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033222)	promoter-TSS (NR_033222)	-55.0	NR_033222	414085.0	Mm.256223	NR_033222	ENSMUSG00000097061	9330151L19Rik	-	RIKEN cDNA 9330151L19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43279933-4	chr5	43279436	43280436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177379, intron 7 of 10)	intron (NM_001177379, intron 7 of 10)	-44582.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	0.0	8.5	0.5	0.0	7.5	0.5
Merged-chr8-3848353-2	chr8	3847853	3848853	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_130905, exon 6 of 6)	3' UTR (NM_130905, exon 6 of 6)	5933.0	NM_130905	170780.0	Mm.52281	NM_130905	ENSMUSG00000040197	Cd209e	SIGNR4|mSIGNR4	CD209e antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65909435-2	chr9	65908935	65909935	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019797)	promoter-TSS (NM_019797)	425.0	NM_173185	214897.0	Mm.325816	NM_173185	ENSMUSG00000032384	Csnk1g1	9130020E21Rik	casein kinase 1, gamma 1	protein-coding	11.0	15.5	13.5	9.0	13.0	8.5
Merged-chr5-113017212-4	chr5	113016713	113017713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-1675.0	NM_177078	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	1.0	2.0	4.0	1.5	1.0	3.0
Merged-chr10-79877902-4	chr10	79877391	79878391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-1776.0	NM_011178	19152.0	Mm.2364	NM_011178	ENSMUSG00000057729	Prtn3	PR3|mPR3	proteinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-58414640-4	chr3	58414140	58415140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081229)	promoter-TSS (NM_001081229)	-80.0	NM_001081229	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121494104-4	chr10	121493601	121494601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17851.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	16.5	50.5	28.5	29.5	62.5	33.0
Merged-chr10-22286504-2	chr10	22286004	22287004	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177775, intron 4 of 5)	intron (NM_001177775, intron 4 of 5)	13030.0	NM_001177775	667281.0	Mm.484254	NM_001177775	ENSMUSG00000075297	H60b	EG667281	histocompatibility 60b	protein-coding	0.0	0.0	0.0	0.0	1.5	1.0
Merged-chr2-102899401-4	chr2	102898915	102899915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	2250.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	97.0	163.0	96.0	82.0	171.5	120.5
Merged-chr18-54998655-4	chr18	54998175	54999175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6084.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124031233-4	chr5	124030743	124031743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	1017.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86407147-4	chr1	86406656	86407656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17795.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49188123-4	chr13	49187630	49188630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013610, intron 1 of 3)	intron (NM_013610, intron 1 of 3)	583.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21382360-4	chr16	21381859	21382859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40759.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35764207-4	chr16	35763723	35764723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	intron (NM_153550, intron 1 of 8)	5133.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	39.5	118.5	73.5	51.0	101.0	68.0
Merged-chr4-136117201-4	chr4	136116666	136117666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26656.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	40.0	79.0	83.0	46.0	112.0	109.5
Merged-chr10-69321461-4	chr10	69321014	69322014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31398.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122034502-4	chr7	122034025	122035025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026140, exon 9 of 9)	3' UTR (NM_026140, exon 9 of 9)	-13327.0	NM_028758	74105.0	Mm.29619	NM_028758	ENSMUSG00000030872	Gga2	1200007E24Rik|mKIAA1080	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120109356-4	chr8	120108878	120109878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4774.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34010996-4	chr11	34010513	34011513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-17820.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-111721108-2	chr4	111720608	111721608	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026470, intron 1 of 12)	intron (NM_026470, intron 1 of 12)	1098.0	NM_026470	67946.0	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding	0.0	1.0	5.5	0.5	2.5	0.5
Merged-chr14-40924512-3	chr14	40924036	40925036	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 2 of 8)	MIR3|SINE|MIR	23673.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84668881-2	chr8	84668412	84669412	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6060.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	6.5	1.5	2.0	4.5	8.5	1.5
Merged-chr15-62039715-2	chr15	62039215	62040215	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	458.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-130547373-4	chr7	130546883	130547883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162855)	promoter-TSS (NM_001162855)	-2.0	NM_001162855	67872.0	Mm.21714	NM_001162855	ENSMUSG00000040331	Nsmce4a	2410003A14Rik	NSE4 homolog A, SMC5-SMC6 complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84194828-2	chr12	84194328	84195328	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163502)	promoter-TSS (NM_001163502)	-813.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52158291-4	chr6	52157802	52158802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311118)	promoter-TSS (NM_001311118)	15.0	NM_010449	15394.0	Mm.197	NM_010449	ENSMUSG00000029844	Hoxa1	ERA1|Hox-1.6	homeobox A1	protein-coding	3.0	1.0	0.5	3.0	1.0	0.5
Merged-chr2-62461008-4	chr2	62460492	62461492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22661.0	NM_008100	14526.0	Mm.45494	NM_008100	ENSMUSG00000000394	Gcg	GLP-1|Glu|PPG	glucagon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121598037-2	chr3	121597537	121598537	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45448.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79841531-4	chr12	79841033	79842033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83200.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-57115395-4	chr2	57114890	57115890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013613)	promoter-TSS (NM_013613)	-352.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10500916-4	chr16	10500403	10501403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302619, intron 2 of 19)	MTEb|LTR|ERVL-MaLR	11122.0	NM_001243761	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-39619010-4	chr8	39618472	39619472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113326, intron 5 of 9)	intron (NM_001113326, intron 5 of 9)	23706.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	45.0	72.5	70.5	16.0	63.5	56.5
Merged-chr2-173276601-4	chr2	173276131	173277131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022995)	promoter-TSS (NM_022995)	-98.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41713021-2	chr4	41712521	41713521	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027278, intron 1 of 1)	intron (NM_027278, intron 1 of 1)	496.0	NM_027278	69961.0	Mm.425182	NM_027278	ENSMUSG00000036114	Rpp25l	2810432D09Rik|AW987258|Rppl25	ribonuclease P/MRP 25 subunit-like	protein-coding	0.0	1.0	0.0	0.0	1.0	0.0
Merged-chr12-17545440-2	chr12	17544941	17545941	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013614, intron 1 of 11)	intron (NM_013614, intron 1 of 11)	568.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	15.0	76.0	47.5	29.5	83.5	41.0
Merged-chr13-21362843-4	chr13	21362341	21363341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016684)	promoter-TSS (NM_016684)	21.0	NM_016684	22758.0	Mm.24124	NM_016684	ENSMUSG00000036721	Zscan12	2510038J07Rik|FPM315|Zfp96|mKIAA0426|zfp-96	zinc finger and SCAN domain containing 12	protein-coding	5.5	16.5	24.5	2.5	17.0	20.5
Merged-chr10-22354362-4	chr10	22353762	22354762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-7632.0	NM_020030	56554.0	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37210466-4	chr10	37209940	37210940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-71514.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-127786052-4	chr1	127785554	127786554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028399, intron 2 of 8)	intron (NM_028399, intron 2 of 8)	11890.0	NM_028399	72949.0	Mm.268672	NM_028399	ENSMUSG00000026349	Ccnt2	2900041I18Rik|C81304|CycT2|CycT2a|CycT2b	cyclin T2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-144881499-2	chr5	144880999	144881999	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038627, intron 16 of 17)	intron (NM_001038627, intron 16 of 17)	15317.0	NR_106006	102465629.0		NR_106006	ENSMUSG00000098822	Mir7039	Gm27824|mmu-mir-7039	microRNA 7039	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54943618-2	chr6	54943118	54944118	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172729, exon 4 of 12)	exon (NM_172729, exon 4 of 12)	28043.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111441813-4	chr12	111441297	111442297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009396)	promoter-TSS (NM_009396)	-864.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75549541-2	chr11	75549041	75550041	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 5 of 13)	intron (NM_001199284, intron 5 of 13)	-1888.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	50.0	130.0	108.0	69.5	118.0	99.5
Merged-chr18-5125518-4	chr18	5125025	5126025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40206.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66102103-2	chr7	66101603	66102603	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7412.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63447168-2	chr14	63446668	63447668	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177628, intron 2 of 3)	intron (NM_177628, intron 2 of 3)	10774.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77531119-4	chr10	77530621	77531621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 1 of 15)	intron (NM_008404, intron 1 of 15)	773.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81466220-4	chr15	81465726	81466726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019712)	promoter-TSS (NM_019712)	-90.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19303947-4	chr7	19303430	19304430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008036, exon 4 of 4)	3' UTR (NM_008036, exon 4 of 4)	6115.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74395553-4	chr17	74395037	74396037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144798)	promoter-TSS (NM_144798)	-71.0	NM_001252478	210148.0	Mm.243943	NM_144798	ENSMUSG00000024069	Slc30a6	9530029F08Rik|ZnT6	solute carrier family 30 (zinc transporter), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-37615274-4	chr6	37614795	37615795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85122.0	NM_145364	208665.0	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-37255621-4	chr12	37255128	37256128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178767, intron 3 of 12)	intron (NM_178767, intron 3 of 12)	13989.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	12.0	7.0	3.0	2.5	5.0	4.5
Merged-chr12-72336225-4	chr12	72335724	72336724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153457, intron 1 of 8)	intron (NM_153457, intron 1 of 8)	72830.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102695543-4	chr12	102694991	102695991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	9378.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-36534342-4	chr13	36533854	36534854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 5 of 5)	intron (NM_001039189, intron 5 of 5)	200123.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91685729-4	chr16	91685218	91686218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021720, intron 3 of 9)	intron (NM_021720, intron 3 of 9)	3010.0	NM_021720	60364.0	Mm.328698	NM_021720	ENSMUSG00000022960	Donson	1110025J21Rik|AI845729|ORF60	downstream neighbor of SON	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81810975-4	chr15	81810488	81811488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017376)	promoter-TSS (NM_017376)	-426.0	NM_017376	21685.0	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27160034-4	chr7	27159516	27160516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357767, intron 2 of 4)	intron (NM_001357767, intron 2 of 4)	5712.0	NM_001357767	112406.0	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160208477-4	chr2	160207983	160208983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	119011.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181187239-4	chr2	181186729	181187729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356427)	promoter-TSS (NM_001356427)	-18.0	NM_025598	66496.0	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64925892-4	chr1	64925411	64926411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 2 of 7)	intron (NM_001039493, intron 2 of 7)	30913.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116003692-4	chr6	116003189	116004189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8684.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-82652978-4	chr6	82652479	82653479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025882)	promoter-TSS (NM_025882)	-114.0	NM_025882	66979.0	Mm.195753	NM_025882	ENSMUSG00000030042	Pole4	2400007P05Rik|5830430F06Rik	polymerase (DNA-directed), epsilon 4 (p12 subunit)	protein-coding	12.0	7.0	13.0	6.5	21.5	9.5
Merged-chr18-82876403-4	chr18	82875888	82876888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20491.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-27176201-2	chr9	27175701	27176701	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20780.0	NM_023277	83964.0	Mm.28770	NM_023277	ENSMUSG00000031990	Jam3	1110002N23Rik|JAM-3|JAM-C|Jcam3	junction adhesion molecule 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-82860760-4	chr10	82860232	82861232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042513, intron 2 of 14)	intron (NM_001042513, intron 2 of 14)	391.0	NM_001042514	50493.0	Mm.210155	NM_015762	ENSMUSG00000020250	Txnrd1	TR|TR1|TrxR1	thioredoxin reductase 1	protein-coding	26.0	47.5	49.5	32.5	43.5	33.0
Merged-chr4-32570786-4	chr4	32570271	32571271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_026843, intron 1 of 4)	intron (NR_026843, intron 1 of 4)	891.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	268.0	555.5	484.5	265.5	657.5	424.5
Merged-chr7-16983047-2	chr7	16982547	16983547	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11541.0	NM_001101535	434130.0	Mm.459162	NM_001101535	ENSMUSG00000041117	Ccdc8	-	coiled-coil domain containing 8	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr6-122596756-4	chr6	122596287	122597287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134391, intron 2 of 7)	intron (NM_001134391, intron 2 of 7)	5657.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	49.0	215.0	101.0	82.0	186.0	104.5
Merged-chr11-61174584-4	chr11	61174053	61175053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004143, intron 1 of 12)	CpG	506.0	NM_001004143	216825.0	Mm.30602	NM_001004143	ENSMUSG00000042506	Usp22	AI427806	ubiquitin specific peptidase 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89103191-4	chr3	89102685	89103685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1218.0	NM_001253751	110196.0	Mm.39472	NM_134469	ENSMUSG00000059743	Fdps	6030492I17Rik|AI256750|Fdpsl1|mKIAA1293	farnesyl diphosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54736288-4	chr6	54735778	54736778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Zaphod|DNA|hAT-Tip100	54654.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75172747-12	chr11	75172287	75173287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029794)	promoter-TSS (NR_029794)	-601.0	NR_029794	387208.0		NR_029794	ENSMUSG00000065590	Mir212	Mirn212|mir-212|mmu-mir-212	microRNA 212	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119516986-2	chr2	119516486	119517486	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30641.0	NM_172857	241624.0	Mm.212773	NM_172857	ENSMUSG00000048647	Exd1	4932702D22Rik|Exdl1|mExd1	exonuclease 3'-5' domain containing 1	protein-coding	1.0	0.5	0.0	1.0	0.0	0.0
Merged-chr16-38476418-4	chr16	38475930	38476930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359898, intron 2 of 5)	intron (NM_001359898, intron 2 of 5)	17497.0	NM_009855	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54408473-4	chr14	54407884	54408884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	1088.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	100.5	157.5	204.5	81.5	139.5	187.0
Merged-chr5-138255697-4	chr5	138255224	138256224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081108, exon 1 of 4)	5' UTR (NM_001081108, exon 1 of 4)	242.0	NM_001081108	66096.0	Mm.206901	NM_001081108	ENSMUSG00000050552	Lamtor4	0910001L09Rik|AV006840	late endosomal/lysosomal adaptor, MAPK and MTOR activator 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-72106805-4	chr1	72106298	72107298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101603.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24407020-4	chr13	24406523	24407523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111110, intron 2 of 16)	MER21-int|LTR|ERVL	-8099.0	NM_007717	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55536619-4	chr13	55536121	55537121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134059)	promoter-TSS (NM_134059)	37.0	NM_134059	72935.0	Mm.205045	NM_134059	ENSMUSG00000021494	Ddx41	2900024F02Rik|AA958953|ABS|AI324246	DEAD (Asp-Glu-Ala-Asp) box polypeptide 41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70135797-2	chr14	70135297	70136297	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021328, intron 8 of 8)	intron (NM_021328, intron 8 of 8)	17994.0	NM_146055	219158.0	Mm.218284	NM_146055	ENSMUSG00000033712	Ccar2	2610301G19Rik|Dbc1|mKIAA1967	cell cycle activator and apoptosis regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5771297-6	chr19	5770749	5771749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001361921, exon 1 of 17)	exon (NM_001361921, exon 1 of 17)	170.0	NM_023912	78891.0	Mm.276063	NM_023912	ENSMUSG00000024941	Scyl1	2810011O19Rik|C85140|Ntkl|mdf|mfd|p105	SCY1-like 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65568876-4	chr9	65568363	65569363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 2 of 5)	MTD|LTR|ERVL-MaLR	11224.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	34.5	82.0	86.0	26.5	97.0	59.5
Merged-chr11-49250544-4	chr11	49250010	49251010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110150)	promoter-TSS (NM_001110150)	-42.0	NM_001110150	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-58160158-4	chr2	58159667	58160667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139200)	promoter-TSS (NM_139200)	-45.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101896691-4	chr7	101896185	101897185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291349, intron 1 of 4)	intron (NM_001291349, intron 1 of 4)	354.0	NM_001291349	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8757195-4	chr10	8756690	8757690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	128880.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	37.5	76.0	41.5	9.0	72.0	36.0
Merged-chr10-81417738-2	chr10	81417238	81418238	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 2 of 8)	intron (NM_026756, intron 2 of 8)	-1441.0	NR_106141	102465778.0		NR_106141	ENSMUSG00000105379	Mir1191b	mmu-mir-1191b	microRNA 1191b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99523090-4	chr12	99522605	99523605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-40736.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36554035-4	chr5	36553539	36554539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 2 of 13)	B3A|SINE|B2	-23416.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	15.0	31.0	22.0	21.5	59.0	15.0
Merged-chr11-75592854-4	chr11	75592367	75593367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008850, intron 2 of 11)	intron (NM_008850, intron 2 of 11)	4788.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	1.5	6.5	13.5	2.5	2.5	13.5
Merged-chr11-16978149-2	chr11	16977649	16978649	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 9 of 9)	intron (NM_019549, intron 9 of 9)	26739.0	NM_176982	319701.0	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	5.5	1.5	6.5	7.5	17.0	11.5
Merged-chr16-10498350-4	chr16	10497861	10498861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302619, intron 2 of 19)	intron (NM_001302619, intron 2 of 19)	8580.0	NM_001243761	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91613179-4	chr16	91612665	91613665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	5834.0	NM_001099738	246738.0	Mm.101927	NM_138664	ENSMUSG00000039763	Dnajc28	BC020175|ORF28	DnaJ heat shock protein family (Hsp40) member C28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22367683-4	chr9	22367174	22368174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028390, intron 8 of 23)	A-rich|Low_complexity|Low_complexity	21532.0	NM_028390	68743.0	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-153564503-2	chr3	153564003	153565003	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 1 of 4)	intron (NM_011372, intron 1 of 4)	160630.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123921270-4	chr4	123920751	123921751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017475, intron 3 of 6)	intron (NM_017475, intron 3 of 6)	3818.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4812358-3	chr7	4811864	4812864	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133777)	promoter-TSS (NM_133777)	-24.0	NM_133777	77891.0	Mm.389787	NM_133777	ENSMUSG00000060860	Ube2s	0910001J09Rik|6720465F12Rik|AA409170|E2-EPF	ubiquitin-conjugating enzyme E2S	protein-coding	209.0	456.5	381.5	150.5	375.0	276.5
Merged-chr1-144317790-4	chr1	144317292	144318292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68688.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128709945-2	chr4	128709445	128710445	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 5 of 14)	intron (NM_018774, intron 5 of 14)	-17626.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53781024-4	chr19	53780527	53781527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170847, intron 1 of 13)	intron (NM_001170847, intron 1 of 13)	103721.0	NM_001170847	73713.0	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160068080-4	chr2	160067574	160068574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51421.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	11.0	25.0	23.0	22.0	43.5	20.0
Merged-chr11-117821400-2	chr11	117820900	117821900	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271729, intron 3 of 5)	PB1D10|SINE|Alu	-4519.0	NM_027827	71562.0	Mm.273958	NM_027827	ENSMUSG00000017718	Afmid	9030621K19Rik|Ammd|FKF|KFA|Kf|formylase	arylformamidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44852554-2	chr7	44852057	44853057	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253920, intron 1 of 4)	intron (NM_001253920, intron 1 of 4)	2550.0	NM_001253920	67605.0	Mm.148007	NM_026270	ENSMUSG00000011096	Akt1s1	1110012J22Rik|AI227026|Lobe|Lobel|PRAS40	AKT1 substrate 1 (proline-rich)	protein-coding	0.0	0.0	2.5	0.0	0.0	0.0
Merged-chr2-14159950-2	chr2	14159450	14160450	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14574.0	NM_001081310	625286.0	Mm.158781	NM_001081310	ENSMUSG00000061531	Tmem236	2010003H20Rik|Fam23a|Gm613	transmembrane protein 236	protein-coding	0.5	1.0	1.5	0.5	1.0	1.5
Merged-chr12-101083672-4	chr12	101083216	101084216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_211355)	promoter-TSS (NM_211355)	-14.0	NM_001160214	68734.0	Mm.87077	NM_211355	ENSMUSG00000041846	Ppp4r3a	1110034C04Rik|BC064465|Smek1|mKIAA2010	protein phosphatase 4 regulatory subunit 3A	protein-coding	77.5	130.0	119.0	60.5	174.5	127.0
Merged-chr6-142715099-4	chr6	142714607	142715607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12833.0	NM_001310143	20928.0	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146152454-3	chr3	146151978	146152978	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 1 of 13)	intron (NM_001005846, intron 1 of 13)	2304.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	0.0	0.0	0.0	0.0	3.5	7.0
Merged-chr10-46108973-4	chr10	46108460	46109460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-135788.0	NR_028274	100302593.0		NR_028274	ENSMUSG00000095118	Snord14d	Gm23710	small nucleolar RNA, C/D box 14D	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12796267-4	chr19	12795762	12796762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024093)	promoter-TSS (NR_024093)	69.0	NM_001361971	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	90.0	274.5	256.5	100.5	302.5	214.0
Merged-chr13-42528353-4	chr13	42527846	42528846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-152453.0	NM_001302635	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-102988717-4	chr9	102988177	102989177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19812.0	NM_033314	24059.0	Mm.207106	NM_033314	ENSMUSG00000032548	Slco2a1	2310021C19Rik|Pgt|Slc21a2|mPgt	solute carrier organic anion transporter family, member 2a1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-22781628-4	chr2	22781126	22782126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	L1_Mus4|LINE|L1	7299.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70721667-1	chr8	70721167	70722167	+	1000.0	f1_c57bl6.idr	intron (NM_001195253, intron 2 of 3)	ZP3AR|Satellite|Satellite	-2397.0	NM_001310465	110385.0	Mm.255180	NM_201607	ENSMUSG00000031842	Pde4c	Dpde1|E130301F19Rik|dunce	phosphodiesterase 4C, cAMP specific	protein-coding	0.5	1.0	7.5	9.0	1.0	5.0
Merged-chr4-141546613-4	chr4	141546133	141547133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030695, exon 1 of 1)	non-coding (NR_030695, exon 1 of 1)	471.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	92.0	151.0	139.0	65.5	136.0	107.0
Merged-chr1-34410048-4	chr1	34409551	34410551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23148.0	NR_039562	100628580.0		NR_039562	ENSMUSG00000092852	Mir5103	mir-5103|mmu-mir-5103|mu-mir-5103	microRNA 5103	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-142903055-4	chr2	142902552	142903552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131921)	promoter-TSS (NR_131921)	87.0	NR_131921	75053.0	Mm.72638	NR_131921	ENSMUSG00000086504	Kif16bos	4930511F01Rik	kinesin family member 16B, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19033859-4	chr10	19033374	19034374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-18464.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	32.0	43.5	42.0	22.5	49.5	20.0
Merged-chr2-19347471-4	chr2	19346961	19347961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126563, intron 1 of 3)	intron (NR_126563, intron 1 of 3)	3144.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-78749472-4	chr12	78748900	78749900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019579, intron 1 of 14)	CpG	453.0	NM_019579	56217.0	Mm.425777	NM_019579	ENSMUSG00000021112	Mpp5	3830420B02Rik|AI255216|AI644496|Pals1	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)	protein-coding	16.5	47.0	44.0	44.0	51.0	52.0
Merged-chr1-125463051-4	chr1	125462489	125463489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-27262.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71279594-4	chr6	71279090	71280090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145568, intron 1 of 3)	intron (NM_145568, intron 1 of 3)	7571.0	NM_145568	57896.0	Mm.250569	NM_145568	ENSMUSG00000053012	Krcc1	AA792894	lysine-rich coiled-coil 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-121225127-4	chr6	121224613	121225613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017379, intron 4 of 4)	intron (NM_017379, intron 4 of 4)	14379.0	NM_017379	53857.0	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50617202-5	chr9	50616692	50617692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028300)	promoter-TSS (NM_028300)	-129.0	NM_028300	72614.0	Mm.147232	NM_028300	ENSMUSG00000000167	Pih1d2	2700059L22Rik	PIH1 domain containing 2	protein-coding	1.5	2.0	0.0	1.5	0.0	1.5
Merged-chr18-61110476-2	chr18	61109976	61110976	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001037859, exon 4 of 22)	exon (NM_001037859, exon 4 of 22)	4904.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7828922-4	chr9	7828397	7829397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007465, intron 2 of 7)	RLTR24B_MM|LTR|ERV1	7909.0	NM_001291503	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96501995-2	chr3	96501495	96502495	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23190.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	4.5	29.0	22.5	7.0	23.0	24.0
Merged-chr11-78697535-4	chr11	78697033	78698033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008702)	promoter-TSS (NM_008702)	-108.0	NM_008702	18099.0	Mm.9001	NM_008702	ENSMUSG00000017376	Nlk	AI194375	nemo like kinase	protein-coding	9.0	27.5	13.5	16.5	30.5	8.5
Merged-chr11-119925410-4	chr11	119924916	119925916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 2)	intron (NR_039557, intron 2 of 2)	11606.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120296316-4	chr2	120295771	120296771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7202.0	NM_001024137	78390.0	Mm.330507	NM_001024137	ENSMUSG00000070719	Pla2g4d	2610311B01Rik|Pla2delta|cPLA2delta	phospholipase A2, group IVD	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105708211-4	chr8	105707714	105708714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198299)	promoter-TSS (NM_198299)	-46.0	NM_198299	102124.0	Mm.276087	NM_198299	ENSMUSG00000013155	Enkd1	AI606951|E130303B06Rik	enkurin domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4925123-4	chr7	4924629	4925629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173008)	promoter-TSS (NM_173008)	-715.0	NM_173008	269855.0	Mm.44190	NM_173008	ENSMUSG00000035279	Ssc5d	A430110N23Rik|S5D-SRCRB	scavenger receptor cysteine rich family, 5 domains	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-53285364-2	chr10	53284864	53285864	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204983, intron 10 of 12)	intron (NM_001204983, intron 10 of 12)	5094.0	NR_038015	100502820.0	Mm.55827	NR_038015	ENSMUSG00000112709	Gm19395	-	predicted gene, 19395	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-86464734-4	chr9	86464247	86465247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027394, exon 1 of 10)	exon (NM_027394, exon 1 of 10)	169.0	NM_027394	70348.0	Mm.53469	NM_027394	ENSMUSG00000032415	Ube2cbp	2610018I03Rik|Ube3d	ubiquitin-conjugating enzyme E2C binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120112797-4	chr8	120112288	120113288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-1364.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180256335-4	chr1	180255837	180256837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001128605)	promoter-TSS (NM_001128605)	-37.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112618126-4	chr12	112617637	112618637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1910.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-75887010-1	chr16	75886510	75887510	+	1000.0	f0_c57.idr	intron (NM_023380, intron 2 of 7)	intron (NM_023380, intron 2 of 7)	22256.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-57673729-4	chr3	57673185	57674185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033349, intron 2 of 3)	intron (NM_001033349, intron 2 of 3)	18852.0	NM_001033349	242037.0	Mm.291091	NM_001033349	ENSMUSG00000074591	Ankub1	Gm410	ankrin repeat and ubiquitin domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47855626-4	chr19	47855126	47856126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010362, intron 2 of 5)	intron (NM_010362, intron 2 of 5)	653.0	NM_010362	14873.0	Mm.378931	NM_010362	ENSMUSG00000025068	Gsto1	AA407097|AI194287|AU018802|Gsto-1|Gstx|Spg-r|p28	glutathione S-transferase omega 1	protein-coding	0.0	13.0	4.0	0.0	1.5	9.5
Merged-chr2-153109062-4	chr2	153108556	153109556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 1 of 12)	intron (NM_001172117, intron 1 of 12)	588.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	7.5	38.0	16.5	15.5	29.5	21.0
Merged-chr2-4509963-4	chr2	4509463	4510463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 5 of 23)	intron (NM_001177843, intron 5 of 23)	-49791.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-69732673-4	chr14	69732154	69733154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134078)	promoter-TSS (NM_134078)	-84.0	NM_134078	105513.0	Mm.159637	NM_134078	ENSMUSG00000034190	Chmp7	4930596K11Rik|6330407G04Rik|AI450338|AW550775	charged multivesicular body protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69331359-4	chr12	69330853	69331853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025441, intron 17 of 32)	B3|SINE|B2	25823.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4115485-2	chr19	4114985	4115985	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001276284, exon 4 of 6)	exon (NM_001276284, exon 4 of 6)	6090.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146888449-4	chr6	146887957	146888957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170433)	promoter-TSS (NM_001170433)	-37.0	NM_001355728	67533.0	Mm.103382	NM_026221	ENSMUSG00000016487	Ppfibp1	4632409B19Rik|AW214454|AW261454	PTPRF interacting protein, binding protein 1 (liprin beta 1)	protein-coding	23.5	35.5	23.5	25.5	31.5	33.0
Merged-chr1-60098283-4	chr1	60097796	60098796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199061)	promoter-TSS (NM_001199061)	49.0	NM_001285463	241066.0	Mm.276441	NM_139150	ENSMUSG00000026017	Carf	Als2cr8|ECBRC-FC1|ECBRC-FC2	calcium response factor	protein-coding	20.0	35.5	27.0	21.5	67.0	29.5
Merged-chr1-140257908-4	chr1	140257402	140258402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081027, intron 1 of 27)	intron (NM_001081027, intron 1 of 27)	11645.0	NM_001081027	240776.0	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-20035197-4	chr3	20034690	20035690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001146324, exon 1 of 9)	exon (NM_001146324, exon 1 of 9)	120.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6746190-4	chr17	6745701	6746701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 7 of 12)	intron (NM_009510, intron 7 of 12)	36579.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108317702-4	chr8	108317214	108318214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD1|LINE|L1	266963.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-9977759-4	chr8	9977261	9978261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026868)	promoter-TSS (NM_026868)	44.0	NM_026868	68904.0	Mm.142570	NM_026868	ENSMUSG00000040396	Abhd13	1110065L07Rik|AI463703|AI788994	abhydrolase domain containing 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57279129-4	chr17	57278628	57279628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011691)	promoter-TSS (NM_011691)	28.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	2.5	20.0	9.0	1.0	24.5	2.5
Merged-chr14-12284786-4	chr14	12284257	12285257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284384, intron 1 of 4)	intron (NM_001284384, intron 1 of 4)	554.0	NM_001284386	218734.0	Mm.44068	NM_146051	ENSMUSG00000033111	3830406C13Rik	-	RIKEN cDNA 3830406C13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117267615-4	chr8	117267099	117268099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	10580.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55447861-4	chr13	55447367	55448367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038018, intron 1 of 15)	intron (NM_001038018, intron 1 of 15)	2536.0	NM_001112711	26385.0	Mm.10193	NM_011938	ENSMUSG00000074886	Grk6	Gprk6	G protein-coupled receptor kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-22376625-4	chr10	22376149	22377149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14755.0	NM_020030	56554.0	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	1.0	1.0	8.5	7.5	1.0	13.0
Merged-chr15-102073753-4	chr15	102073238	102074238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145625)	promoter-TSS (NM_145625)	-35.0	NM_145625	75705.0	Mm.290022	NM_145625	ENSMUSG00000058655	Eif4b	2310046H11Rik|AL024095|C85189|Eif4a2	eukaryotic translation initiation factor 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55020310-4	chr13	55019820	55020820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033245, intron 1 of 18)	intron (NM_001033245, intron 1 of 18)	499.0	NM_001206390	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	40.5	125.0	69.5	33.5	133.0	95.5
Merged-chr13-107889241-4	chr13	107888736	107889736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	CpG	828.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47788527-4	chr6	47788006	47789006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15146.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	43.5	88.0	77.0	43.0	83.0	63.0
Merged-chr7-116504269-4	chr7	116503770	116504770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130479)	promoter-TSS (NM_001130479)	-99.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116031221-4	chr11	116030702	116031702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286006, intron 1 of 15)	intron (NM_001286006, intron 1 of 15)	886.0	NM_172569	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15695771-4	chr17	15695268	15696268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9199.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-24500681-2	chr14	24500181	24501181	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9928.0	NM_001360586	20088.0	Mm.16775	NM_011297	ENSMUSG00000025290	Rps24	-	ribosomal protein S24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5807993-4	chr17	5807488	5808488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8498.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80433686-4	chr10	80433203	80434203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164151)	promoter-TSS (NM_001164151)	-50.0	NM_001164148	21423.0	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38650989-4	chr15	38650495	38651495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10909.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94378483-4	chr10	94377973	94378973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	66524.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36465217-4	chr18	36464700	36465700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-10705.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	1.0	6.5	6.0	1.5	17.0	1.5
Merged-chr14-30479556-4	chr14	30479073	30480073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133761)	promoter-TSS (NM_133761)	8.0	NM_133761	75901.0	Mm.28733	NM_133761	ENSMUSG00000021962	Dcp1a	1110066A22Rik|4930568L04Rik|AU019772|D14Ertd817e|Mitc1|SMIF	decapping mRNA 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-130058647-4	chr3	130058169	130059169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207209, intron 1 of 23)	intron (NM_207209, intron 1 of 23)	2238.0	NM_207209	99683.0	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101972830-4	chr5	101972332	101973332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 4 of 66)	B2_Mm2|SINE|B2	97089.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	26.5	67.0	65.5	28.5	79.0	40.5
Merged-chr6-124688519-4	chr6	124687951	124688951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149320, intron 1 of 11)	intron (NR_149320, intron 1 of 11)	23727.0	NM_013536	14791.0	Mm.6390	NM_013536	ENSMUSG00000004268	Emg1	C2f|Grcc2f	EMG1 N1-specific pseudouridine methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4593749-4	chr12	4593255	4594255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198969, intron 1 of 16)	intron (NM_001198969, intron 1 of 16)	747.0	NM_001198968	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152153973-4	chr4	152153474	152154474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1767.0	NM_207687	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-127351870-4	chr6	127351379	127352379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-43912.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19004116-4	chr7	19003641	19004641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178757)	promoter-TSS (NM_178757)	76.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	5.0	10.0	8.0	7.5	5.0	18.0
Merged-chr6-120148642-2	chr6	120148142	120149142	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	(TG)n|Simple_repeat|Simple_repeat	-45181.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-41161649-4	chr9	41161229	41162229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3667.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	152.5	459.0	284.0	111.5	278.5	187.5
Merged-chr11-19020548-4	chr11	19020055	19021055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1586.0	NM_010789	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85954166-2	chr12	85953666	85954666	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 28 of 32)	intron (NM_001347395, intron 28 of 32)	124875.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46640018-4	chr8	46639514	46640514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009810)	TTS (NM_009810)	22723.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45673194-4	chr19	45672734	45673734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13041.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	10.5	9.5	7.5	10.5	9.5	7.0
Merged-chr5-23874646-4	chr5	23874163	23875163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22430.0	NR_028536	100217436.0		NR_028536		Snord93	Gm22397|MBII-336	small nucleolar RNA, C/D box 93	snoRNA	17.5	69.5	56.0	23.0	41.5	36.5
Merged-chr8-79711745-4	chr8	79711229	79712229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357235)	promoter-TSS (NM_001357235)	11.0	NM_015751	24015.0	Mm.5831	NM_015751	ENSMUSG00000058355	Abce1	C79080|Oabp|RLI|RNS41|RNS4I|Rnaseli	ATP-binding cassette, sub-family E (OABP), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52198179-4	chr3	52197689	52198689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70148.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-85099239-4	chr16	85098731	85099731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 3 of 15)	intron (NM_001198825, intron 3 of 15)	74476.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19084517-4	chr3	19084035	19085035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78560.0	NM_028840	74252.0	Mm.200383	NM_028840	ENSMUSG00000027599	Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139666678-4	chr5	139666164	139667164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69669.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	13.0	17.5	11.5	6.0	6.5	5.0
Merged-chr5-20256762-4	chr5	20256225	20257225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 6 of 22)	intron (NM_001170746, intron 6 of 22)	349207.0	NM_015823	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-91961568-4	chr5	91961063	91962063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073442, intron 1 of 9)	intron (NR_073442, intron 1 of 9)	993.0	NR_073442	68098.0	Mm.159453	NM_026557	ENSMUSG00000029397	Rchy1	ARNIP|CHIMP|Pirh2|Zfp363|Znf363	ring finger and CHY zinc finger domain containing 1	protein-coding	28.0	56.5	35.0	28.0	56.5	36.0
Merged-chr7-12781147-2	chr7	12780647	12781647	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5489.0	NM_001017955	232875.0	Mm.333573	NM_001017955	ENSMUSG00000070822	Zscan18	EG232875	zinc finger and SCAN domain containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-65137934-4	chr6	65137417	65138417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019455, intron 2 of 5)	intron (NM_019455, intron 2 of 5)	6813.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-63939601-2	chr7	63939101	63940101	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021366)	promoter-TSS (NM_021366)	-686.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	70.0	188.0	138.5	80.5	189.5	134.0
Merged-chr13-9082356-4	chr13	9081869	9082869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11512.0	NM_001311117	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25532335-4	chr9	25531811	25532811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	50714.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-99047032-2	chr14	99046532	99047532	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175245)	promoter-TSS (NM_175245)	655.0	NM_175265	77744.0	Mm.23503	NM_175265	ENSMUSG00000022070	Bora	6720463M24Rik|AI317232	bora, aurora kinase A activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35400593-4	chr8	35400086	35401086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24845.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	27.0	62.5	72.0	33.5	53.5	40.5
Merged-chr1-191821447-4	chr1	191820944	191821944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010892)	promoter-TSS (NM_010892)	-29.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	1.0	3.5	3.0	1.0	9.5	0.5
Merged-chr6-29211982-3	chr6	29211465	29212465	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302934, intron 2 of 14)	CpG	332.0	NM_011829	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45011728-4	chr4	45011222	45012222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001163284, exon 1 of 2)	5' UTR (NM_001163284, exon 1 of 2)	690.0	NM_001163284	230119.0	Mm.44222	NM_173399	ENSMUSG00000049657	Zbtb5	5930421I10|9430083K24Rik|AI646847|mKIAA0354	zinc finger and BTB domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-115000005-4	chr4	114999502	115000502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009185)	promoter-TSS (NM_009185)	-116.0	NM_001304559	20460.0	Mm.3988	NM_009185	ENSMUSG00000028718	Stil	Sil	Scl/Tal1 interrupting locus	protein-coding	27.0	82.0	38.5	30.5	92.5	66.5
Merged-chr18-77714488-4	chr18	77713993	77714993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178670)	promoter-TSS (NM_178670)	309.0	NR_027978	67640.0	Mm.482903	NM_026289		4930465K10Rik	-	RIKEN cDNA 4930465K10 gene	ncRNA	51.5	109.0	93.0	46.5	171.0	131.0
Merged-chr17-83707588-2	chr17	83707088	83708088	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 1 of 16)	B1_Mur4|SINE|Alu	1425.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90251233-4	chr9	90250748	90251748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	19521.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-72307536-4	chr1	72307048	72308048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009533, exon 1 of 21)	exon (NM_009533, exon 1 of 21)	127.0	NM_001357519	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32508885-4	chr9	32508386	32509386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	32566.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45557546-4	chr17	45557040	45558040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008690, intron 1 of 5)	intron (NM_008690, intron 1 of 5)	1840.0	NM_001304956	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	47.0	95.0	60.0	55.0	77.5	57.0
Merged-chr10-121365463-3	chr10	121364944	121365944	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 1 of 13)	CpG	354.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	30.0	77.5	65.5	41.5	78.0	89.0
Merged-chr14-121423639-4	chr14	121423137	121424137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44407.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156680878-4	chr1	156680349	156681349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145413, exon 8 of 8)	3' UTR (NM_145413, exon 8 of 8)	-6510.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	76.0	129.5	102.0	117.0	430.0	280.5
Merged-chr6-42340333-4	chr6	42339864	42340864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-9464.0	NM_001289619	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132028889-2	chr2	132028389	132029389	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175445, intron 1 of 10)	intron (NM_175445, intron 1 of 10)	1099.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-46999870-4	chr14	46999366	47000366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	-1474.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	88.0	136.0	120.5	83.0	199.5	97.5
Merged-chr17-88529015-4	chr17	88528520	88529520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-1104.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	26.5	15.0	16.5	21.5	21.5	41.5
Merged-chr10-122615834-4	chr10	122615347	122616347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-32492.0	NR_105839	102465223.0		NR_105839	ENSMUSG00000098522	Mir6412	Gm27364|mmu-mir-6412	microRNA 6412	ncRNA	17.0	14.5	29.0	17.0	11.5	29.0
Merged-chr17-84100802-4	chr17	84100292	84101292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22132.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-43921581-3	chr2	43921075	43922075	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 6 of 14)	intron (NM_001301831, intron 6 of 14)	143749.0	NR_040622	320872.0	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33751748-4	chr16	33751246	33752246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 12 of 14)	intron (NM_175256, intron 12 of 14)	-42291.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118705755-4	chr9	118705238	118706238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 15 of 27)	MTD|LTR|ERVL-MaLR	-5954.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	133.5	315.5	272.5	109.5	247.0	202.0
Merged-chr10-119055422-4	chr10	119054897	119055897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4898.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67608269-4	chr10	67607753	67608753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36294.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25151343-1	chr9	25150843	25151843	+	1000.0	f0_c57.idr	5' UTR (NM_020586, exon 1 of 8)	5' UTR (NM_020586, exon 1 of 8)	438.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41264071-4	chr19	41263544	41264544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133352)	promoter-TSS (NM_133352)	-40.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	7.5	19.5	30.0	0.0	17.5	13.5
Merged-chr11-99043154-4	chr11	99042648	99043648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010517, intron 1 of 3)	intron (NM_010517, intron 1 of 3)	1904.0	NM_010517	16010.0	Mm.233799	NM_010517	ENSMUSG00000017493	Igfbp4	AI875747|Deb2|IBP-4|IGFBP-4	insulin-like growth factor binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104442943-4	chr8	104442429	104443429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001013380, exon 1 of 13)	5' UTR (NM_001013380, exon 1 of 13)	118.0	NM_001013380	234663.0	Mm.289583	NM_001013380	ENSMUSG00000035770	Dync1li2	AA409702|C920003I06|Dncli2|Dnclic2|LIC2	dynein, cytoplasmic 1 light intermediate chain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-87255496-4	chr9	87255010	87256010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199316)	promoter-TSS (NM_199316)	22.0	NM_199316	382090.0	Mm.335338	NM_199316	ENSMUSG00000056919	Cep162	4922501C03Rik|mKIAA1009	centrosomal protein 162	protein-coding	0.0	5.0	0.0	0.0	0.5	0.0
Merged-chr10-127584731-2	chr10	127584231	127585231	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008512, exon 16 of 89)	exon (NM_008512, exon 16 of 89)	36417.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0.0	4.5	3.5	0.0	4.0	8.0
Merged-chr5-136136104-4	chr5	136135606	136136606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347492)	promoter-TSS (NM_001347492)	-32.0	NM_027891	71735.0	Mm.425292	NM_027891	ENSMUSG00000029703	Lrwd1	1200011O22Rik|AU042569|AW548074|Orca	leucine-rich repeats and WD repeat domain containing 1	protein-coding	12.5	11.5	8.5	20.0	13.5	20.0
Merged-chr11-69846513-4	chr11	69846007	69847007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023564)	promoter-TSS (NM_023564)	-110.0	NM_023564	70310.0	Mm.28874	NM_023564	ENSMUSG00000019461	Plscr3	2210403O21Rik|2610037N06Rik|ESTM3|X83310	phospholipid scramblase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39585633-3	chr1	39585126	39586126	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-8279.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-26593564-5	chr11	26593044	26594044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027260, intron 1 of 12)	CpG	376.0	NM_027260	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	105.0	147.5	115.0	81.5	130.0	105.0
Merged-chr3-59219546-4	chr3	59219032	59220032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357010, intron 3 of 3)	intron (NM_001357010, intron 3 of 3)	-8650.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125596607-4	chr7	125596119	125597119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-6810.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	58.0	142.5	138.0	50.5	121.0	80.0
Merged-chr13-42822760-2	chr13	42822260	42823260	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005740, intron 1 of 12)	intron (NM_001005740, intron 1 of 12)	-43487.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-10342721-4	chr3	10342233	10343233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025512, intron 6 of 7)	RLTR20D|LTR|ERVK	-7077.0	NM_001010834	241877.0	Mm.442146	NM_001010834	ENSMUSG00000058921	Slc10a5	Gm405|mP5	solute carrier family 10 (sodium/bile acid cotransporter family), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36194810-4	chr18	36194300	36195300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167891, intron 1 of 9)	intron (NM_001167891, intron 1 of 9)	2360.0	NM_001167891	100042150.0	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-136669994-4	chr3	136669502	136670502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293622)	promoter-TSS (NM_001293622)	-64.0	NM_008913	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-46727268-4	chr13	46726782	46727782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175749, intron 1 of 21)	CpG	567.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80936590-2	chr10	80936090	80937090	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6499.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-107030209-4	chr8	107029658	107030658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1168.0	NM_126165	116733.0	Mm.236004	NM_126165	ENSMUSG00000031913	Vps4a	4930589C15Rik|AI325971|AW553189	vacuolar protein sorting 4A	protein-coding	9.0	5.0	7.0	3.0	13.0	8.0
Merged-chr17-61479485-2	chr17	61478985	61479985	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	1401832.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60738293-4	chr10	60737830	60738830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 2 of 5)	B1_Mm|SINE|Alu	14452.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31770828-4	chr2	31770361	31771361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	10688.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155475177-4	chr1	155474678	155475678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	51933.0	NR_132128	433367.0	Mm.359304	NR_132128	ENSMUSG00000073535	Gm5532	EG433367	predicted gene 5532	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-62466804-4	chr13	62466322	62467322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136496)	promoter-TSS (NM_001136496)	-10.0	NM_001136496	71508.0	Mm.442497	NM_178875	ENSMUSG00000113450	Zfp935	8430426H19Rik|Es113	zinc finger protein 935	protein-coding	52.0	84.0	51.5	50.0	59.0	56.0
Merged-chr19-57452934-4	chr19	57452431	57453431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028115)	promoter-TSS (NM_028115)	25.0	NM_028115	72133.0	Mm.258404	NM_028115	ENSMUSG00000025086	Trub1	2610009I02Rik|9030425C13Rik|AI448235|BB118943|C76870	TruB pseudouridine (psi) synthase family member 1	protein-coding	11.0	30.5	14.0	4.5	16.5	16.0
Merged-chr4-72165865-4	chr4	72165392	72166392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285531, intron 6 of 6)	intron (NM_001285531, intron 6 of 6)	35001.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69100037-4	chr11	69099532	69100532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159367)	promoter-TSS (NM_001159367)	-120.0	NM_001159367	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3907506-1	chr19	3907006	3908006	+	1000.0	f0_balb.idr	promoter-TSS (NM_001167784)	promoter-TSS (NM_001167784)	-373.0	NM_001136091	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12433267-4	chr19	12432772	12433772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5367.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	8.5	59.0	35.5	7.0	63.5	43.5
Merged-chr2-29965451-4	chr2	29964950	29965950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001309460)	promoter-TSS (NM_001309460)	-110.0	NM_001177668	20740.0	Mm.204969	NM_001076554	ENSMUSG00000057738	Sptan1	2610027H02Rik|Spna-2|Spna2	spectrin alpha, non-erythrocytic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131911070-4	chr1	131910571	131911571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145804, intron 1 of 6)	CpG	613.0	NM_175294	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-43477634-4	chr15	43477132	43478132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046064)	promoter-TSS (NR_046064)	403.0	NM_025736	66736.0	Mm.244512	NM_025736	ENSMUSG00000022337	Emc2	4921531G14Rik|AV060620|AW209495|Ttc35	ER membrane protein complex subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-22028875-4	chr13	22028374	22029374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6769.0	NM_175659	319168.0	Mm.250564	NM_175659	ENSMUSG00000069302	Hist1h2ah	-	histone cluster 1, H2ah	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80053510-4	chr10	80053002	80054002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008162)	promoter-TSS (NM_008162)	14.0	NM_008162	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103418735-4	chr11	103418230	103419230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6066.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	59.0	186.0	182.5	71.0	236.0	165.5
Merged-chr6-38641426-4	chr6	38640955	38641955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4216.0	NM_001033171	74253.0	Mm.121859	NM_001033171	ENSMUSG00000071537	Klrg2	2310020F24Rik	killer cell lectin-like receptor subfamily G, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76218556-4	chr16	76218048	76219048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95935.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137593907-7	chr4	137593406	137594406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347227)	promoter-TSS (NM_001347227)	-266.0	NM_001347227	170707.0	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	89.5	274.5	180.5	103.5	256.0	191.0
Merged-chr11-114727342-4	chr11	114726833	114727833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034878)	promoter-TSS (NM_001034878)	-79.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155979481-4	chr2	155978982	155979982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130000, intron 19 of 32)	intron (NM_001130000, intron 19 of 32)	22924.0	NM_177217	16328.0	Mm.288729	NM_008383	ENSMUSG00000038241	Cep250	AW490617|B230210E21Rik|Cep2|Inmp	centrosomal protein 250	protein-coding	39.5	99.0	74.5	44.0	103.0	84.0
Merged-chr3-79445053-2	chr3	79444553	79445553	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142953, intron 3 of 4)	intron (NM_001142953, intron 3 of 4)	99677.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3646016-4	chr8	3645519	3646519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-9751.0	NM_001204959	57264.0	Mm.1181	NM_022984	ENSMUSG00000012705	Retn	ADSF|Fizz3|Rstn|Xcp4	resistin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-22799802-4	chr2	22799297	22800297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	25470.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10599214-3	chr17	10598718	10599718	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	143002.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	3.0	0.0	0.0	0.5	0.0	0.0
Merged-chr3-79161310-4	chr3	79160803	79161803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15428.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	9.5	39.0	14.5	15.5	46.0	17.0
Merged-chr19-47224954-4	chr19	47224476	47225476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021360, intron 1 of 5)	ORR1E|LTR|ERVL-MaLR	-3867.0	NM_001163480	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	53.0	101.5	55.5	26.0	57.5	41.5
Merged-chr3-88410059-4	chr3	88409570	88410570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178696)	TTS (NM_178696)	327.0	NM_001310605	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80703911-2	chr10	80703411	80704411	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027829, exon 5 of 10)	exon (NM_027829, exon 5 of 10)	1218.0	NM_027829	71564.0	Mm.35802	NM_027829	ENSMUSG00000055862	Izumo4	9030607L17Rik|AI550407	IZUMO family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149171696-4	chr4	149171176	149172176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4971.0	NM_001081274	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113490694-4	chr13	113490198	113491198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 1 of 6)	intron (NR_045501, intron 1 of 6)	12146.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135423342-4	chr3	135422837	135423837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025902)	promoter-TSS (NM_025902)	96.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141147540-4	chr4	141147042	141148042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172518)	promoter-TSS (NM_172518)	-380.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71581052-7	chr2	71580566	71581566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-34312.0	NM_010054	13392.0	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32516129-2	chr9	32515629	32516629	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	25323.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60745105-4	chr10	60744583	60745583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 2 of 5)	intron (NM_023596, intron 2 of 5)	7699.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64600860-7	chr17	64600293	64601293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008549)	promoter-TSS (NM_008549)	-856.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123923269-4	chr9	123922793	123923793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	45399.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89773947-1	chr3	89773447	89774447	+	1000.0	f0_balb.idr	promoter-TSS (NR_130957)	promoter-TSS (NR_130957)	338.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24030785-4	chr5	24030280	24031280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053090)	promoter-TSS (NM_053090)	-90.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	27.5	59.5	50.0	6.0	23.5	30.0
Merged-chr10-96332974-4	chr10	96332475	96333475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	106768.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139252234-4	chr5	139251722	139252722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026269)	promoter-TSS (NM_026269)	-102.0	NM_001359238	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77921117-4	chr9	77920619	77921619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134255, intron 1 of 7)	intron (NM_134255, intron 1 of 7)	3754.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.0	8.5	0.0	0.5	8.0	4.0
Merged-chr9-123872388-2	chr9	123871888	123872888	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-10359.0	NM_011798	23832.0	Mm.390241	NM_011798	ENSMUSG00000060509	Xcr1	Ccxcr1|Gpr5|mXcr1	chemokine (C motif) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-119240161-4	chr10	119239664	119240664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027994)	promoter-TSS (NM_027994)	-109.0	NM_027994	71902.0	Mm.203965	NM_027994	ENSMUSG00000020114	Cand1	2310038O07Rik|6330512O03Rik|AI195005|AI846556|D10Ertd516e|Tp120a|mKIAA0829	cullin associated and neddylation disassociated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72487184-4	chr8	72486681	72487681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177766, intron 4 of 5)	intron (NM_177766, intron 4 of 5)	5433.0	NM_177766	270066.0	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	33.0	81.0	23.0	30.5	31.5	19.5
Merged-chr19-42090296-4	chr19	42089771	42090771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145501)	promoter-TSS (NM_145501)	-164.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	116.5	329.5	221.0	81.0	279.5	115.5
Merged-chr17-5770458-4	chr17	5769939	5770939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28218.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75550039-4	chr11	75549539	75550539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 5 of 13)	intron (NM_001199284, intron 5 of 13)	-1390.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	63.0	190.5	132.0	96.0	209.5	148.0
Merged-chr15-58746754-2	chr15	58746254	58747254	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76673.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84243307-4	chr12	84242791	84243791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24410.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124013079-4	chr5	124012573	124013573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	16221.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	6.0	24.5	10.0	0.5	15.5	13.0
Merged-chr3-132115941-4	chr3	132115458	132116458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020265, intron 1 of 3)	C-rich|Low_complexity|Low_complexity	30666.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45298256-4	chr9	45297775	45298775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20825.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	4.0	7.0	4.5	13.0	24.0	34.0
Merged-chr11-110697213-4	chr11	110696714	110697714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	217874.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0.0	5.5	5.0	6.0	0.5	9.5
Merged-chr14-121427894-4	chr14	121427401	121428401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-48671.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58747928-2	chr15	58747428	58748428	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	75499.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-60852557-4	chr1	60852053	60853053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56472.0	NM_009843	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	5.0	22.0	14.5	16.0	18.5	16.5
Merged-chr17-10740346-4	chr17	10739833	10740833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	99858.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-48831497-3	chr16	48830991	48831991	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11061.0	NM_020509	57262.0	Mm.441868	NM_020509	ENSMUSG00000061100	Retnla	1810019L16Rik|Fizz-1|Fizz1|HIMF|RELM-alpha|RELMa|RELMalpha|Xcp2	resistin like alpha	protein-coding	7.5	14.5	6.0	5.0	1.0	8.5
Merged-chr17-47793520-4	chr17	47793041	47794041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7797.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.0	12.5	12.0	1.0	14.0	6.5
Merged-chr13-119690237-4	chr13	119689731	119690731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145942)	promoter-TSS (NM_145942)	-120.0	NM_145942	208715.0	Mm.61526	NM_145942	ENSMUSG00000093930	Hmgcs1	B130032C06Rik	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150033491-2	chr4	150032991	150033991	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24468.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	0.0	0.0	1.5	0.0	1.5	2.0
Merged-chr2-94273400-4	chr2	94272906	94273906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12007.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146657644-4	chr3	146657133	146658133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6316.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124477578-4	chr6	124477095	124478095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12811.0	NM_153508	232370.0	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90034123-4	chr9	90033617	90034617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20150.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	34.5	78.0	40.5	35.5	43.0	28.5
Merged-chr4-41463793-2	chr4	41463293	41464293	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024241, intron 1 of 12)	intron (NM_024241, intron 1 of 12)	1055.0	NM_024241	109242.0	Mm.370288	NM_024241	ENSMUSG00000028438	Kif24	4933425J19Rik|9430029L23Rik	kinesin family member 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79812673-2	chr12	79812173	79813173	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 10 of 10)	intron (NM_009014, intron 10 of 10)	112060.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62519984-4	chr4	62519472	62520472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008525)	promoter-TSS (NM_008525)	-63.0	NM_001276446	17025.0	Mm.6988	NM_008525	ENSMUSG00000028393	Alad	ALADH|Lv	aminolevulinate, delta-, dehydratase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137048762-4	chr4	137048235	137049235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198248)	promoter-TSS (NM_198248)	-40.0	NM_198248	230848.0	Mm.31068	NM_198248	ENSMUSG00000060862	Zbtb40	BC059177|C230087D24|Gm571|mKIAA0478	zinc finger and BTB domain containing 40	protein-coding	41.0	63.0	49.5	45.0	86.0	52.5
Merged-chr11-119709414-4	chr11	119708919	119709919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028898, intron 3 of 33)	intron (NM_028898, intron 3 of 33)	106514.0	NM_028898	74370.0	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	19.0	13.0	6.5	1.5	5.5	0.0
Merged-chr12-84750863-2	chr12	84750363	84751363	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22249.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49125598-2	chr7	49125098	49126098	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_154465, intron 3 of 3)	intron (NR_154465, intron 3 of 3)	36560.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157063586-4	chr2	157063078	157064078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	15687.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28385104-2	chr7	28384604	28385604	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026042)	TTS (NM_026042)	-5876.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8969725-4	chr3	8969220	8970220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-5574.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	56.5	180.5	186.5	49.0	177.0	152.5
Merged-chr9-3029780-4	chr9	3029308	3030308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	8935.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6077211-4	chr19	6076733	6077733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081041)	promoter-TSS (NM_001081041)	-46.0	NM_001081041	68505.0	Mm.227361	NM_001081041	ENSMUSG00000024799	Vps51	1110014N23Rik|3110057M17Rik|AI837850|Ffr	VPS51 GARP complex subunit	protein-coding	13.0	25.0	23.0	11.5	34.0	19.5
Merged-chr10-4047265-3	chr10	4046766	4047766	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 17 of 27)	intron (NM_001170785, intron 17 of 27)	74191.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	3.5	3.0	3.5	13.5	2.5	2.5
Merged-chr2-110017781-4	chr2	110017288	110018288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026613)	promoter-TSS (NM_026613)	-29.0	NM_001355581	68201.0	Mm.181767	NM_026613	ENSMUSG00000027160	Ccdc34	2810027O19Rik|4930522P10Rik|AI596202	coiled-coil domain containing 34	protein-coding	14.5	25.5	9.5	18.5	8.0	15.0
Merged-chr7-27689387-4	chr7	27688864	27689864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001112731)	promoter-TSS (NM_001112731)	24.0	NM_001112731	112415.0	Mm.145362	NM_198417	ENSMUSG00000057093	Zfp607b	C030039L03Rik	zinc finger protein 607B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-42924965-4	chr17	42924466	42925466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48542.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45108120-4	chr4	45107582	45108582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134646)	promoter-TSS (NM_001134646)	31.0	NM_001134646	68512.0	Mm.282081	NM_001099675	ENSMUSG00000078713	Tomm5	1110019J04Rik|Tom5	translocase of outer mitochondrial membrane 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-146168378-2	chr4	146167878	146168878	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177545, intron 2 of 4)	intron (NM_001177545, intron 2 of 4)	10688.0	NM_001177545	667666.0	Mm.459230	NM_001177545	ENSMUSG00000066007	Zfp600	Gm13164	zinc finger protein 600	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83703908-4	chr11	83703395	83704395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081957)	promoter-TSS (NM_001081957)	-161.0	NM_001081957	100034251.0	Mm.24097	NM_001081957	ENSMUSG00000069792	Wfdc17	Amwap|Gm11428	WAP four-disulfide core domain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-48901057-4	chr11	48900549	48901549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024230, intron 2 of 4)	intron (NM_001024230, intron 2 of 4)	1103.0	NM_001024230	432555.0	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73928184-4	chr17	73927675	73928675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 6 of 35)	B1F1|SINE|Alu	22021.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3144977-2	chr11	3144494	3145494	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 16 of 32)	intron (NM_030207, intron 16 of 32)	20973.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92675878-4	chr16	92675372	92676372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 4 of 6)	intron (NM_001111022, intron 4 of 6)	21457.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	35.5	85.0	41.0	25.5	63.5	38.0
Merged-chr2-5714613-7	chr2	5714151	5715151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177343, exon 1 of 11)	5' UTR (NM_177343, exon 1 of 11)	111.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51521150-2	chr10	51520650	51521650	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30252.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27486383-2	chr7	27485883	27486883	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018820)	promoter-TSS (NM_018820)	-570.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25505307-2	chr9	25504807	25505807	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	23710.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77959959-4	chr9	77959459	77960459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134255, intron 2 of 7)	intron (NM_134255, intron 2 of 7)	42594.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	11.0	9.5	10.0	8.0	21.0	16.0
Merged-chr7-127262659-2	chr7	127262159	127263159	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Ala-GCY_|tRNA|tRNA	-1992.0	NM_023203	66422.0	Mm.29898	NM_023203	ENSMUSG00000042462	Dctpp1	2410015N17Rik|AI854235|RS21-C6	dCTP pyrophosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116608021-2	chr7	116607521	116608521	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103652.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84666231-4	chr3	84665732	84666732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177260)	promoter-TSS (NM_177260)	40.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33932292-4	chr16	33931746	33932746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	34792.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-105431754-4	chr14	105431253	105432253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045859, intron 1 of 2)	intron (NR_045859, intron 1 of 2)	4194.0	NR_045859	71362.0	Mm.410781	NR_045859	ENSMUSG00000115548	5430440P10Rik	-	RIKEN cDNA 5430440P10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32746436-4	chr5	32745942	32746942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347332)	promoter-TSS (NM_001347332)	-100.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	53.0	139.0	115.0	56.0	120.5	91.5
Merged-chr9-86467174-4	chr9	86466627	86467627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177208)	promoter-TSS (NM_177208)	-27.0	NM_177208	320615.0	Mm.245500	NM_177208	ENSMUSG00000034973	Dopey1	B130005I07Rik|BC035275|C130028L17|D9Ertd809e	dopey family member 1	protein-coding	0.0	0.5	1.0	0.0	1.0	0.0
Merged-chr17-10704325-3	chr17	10703821	10704821	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	L1MEf|LINE|L1	135870.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29114095-3	chr17	29113579	29114579	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20310.0	NM_007669	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	4.0	0.0	1.0	1.5	8.5	2.5
Merged-chr19-6334916-4	chr19	6334415	6335415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168488)	promoter-TSS (NM_001168488)	-64.0	NM_001168488	17283.0	Mm.12917	NM_008583	ENSMUSG00000024947	Men1	AW045611	multiple endocrine neoplasia 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-66437026-4	chr8	66436534	66437534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 6 of 7)	intron (NM_175188, intron 6 of 7)	49496.0	NM_025465	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73320789-4	chr15	73320284	73321284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001358045, exon 8 of 34)	exon (NM_001358045, exon 8 of 34)	-65902.0	NR_029561	387169.0		NR_029561	ENSMUSG00000065612	Mir151	Mirn151|mir-151|mmu-mir-151	microRNA 151	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35810237-2	chr17	35809737	35810737	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11476.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	1.0	5.5	10.5	3.0	3.0	7.0
Merged-chr9-50739412-4	chr9	50738918	50739918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025865)	TTS (NM_025865)	-1683.0	NM_001311069	330938.0	Mm.82598	NM_178118	ENSMUSG00000032064	Dixdc1	4930563F16Rik|BC048182|Ccd1|Ccd1Aalpha1L|Ccd1Abeta1L|Ccd1BalphaL|Ccd1BbetaL|Ccd1CL|mKIAA1735	DIX domain containing 1	protein-coding	0.0	10.5	9.5	0.0	2.5	5.0
Merged-chr16-87698918-4	chr16	87698417	87699417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007520)	promoter-TSS (NM_007520)	-37.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-176816970-4	chr1	176816470	176817470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 1 of 18)	MLTR11B|LTR|ERVK	2310.0	NM_029756	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	12.5	26.5	24.0	7.5	19.5	18.0
Merged-chr10-8886141-4	chr10	8885683	8886683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175155)	promoter-TSS (NM_175155)	-113.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	125.5	210.5	274.5	84.5	173.0	185.0
Merged-chr18-4267062-2	chr18	4266562	4267562	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	85891.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-47673612-4	chr8	47673126	47674126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023503, intron 1 of 1)	intron (NM_023503, intron 1 of 1)	1533.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118349080-4	chr11	118348585	118349585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011594, intron 1 of 4)	intron (NM_011594, intron 1 of 4)	6326.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79546146-4	chr15	79545672	79546672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040187, intron 1 of 12)	CpG	387.0	NM_199079	67040.0	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	51.5	83.0	72.5	57.5	81.5	74.5
Merged-chr11-70445645-4	chr11	70445140	70446140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6291.0	NM_025397	66172.0	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-76241864-4	chr18	76241374	76242374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010754, exon 1 of 11)	5' UTR (NM_010754, exon 1 of 11)	173.0	NM_010754	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	65.0	221.0	186.0	64.0	219.5	173.0
Merged-chr8-10946204-4	chr8	10945663	10946663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17706.0	NR_135302	665306.0	Mm.358758	NR_030715	ENSMUSG00000038917	3930402G23Rik	-	RIKEN cDNA 3930402G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32863616-4	chr5	32863093	32864093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170567)	promoter-TSS (NM_001170567)	-128.0	NM_177786	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84089744-4	chr17	84089171	84090171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045458, intron 5 of 5)	intron (NR_045458, intron 5 of 5)	11011.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-25958868-4	chr16	25958372	25959372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146912.0	NM_173379	210530.0	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-24645524-4	chr6	24645028	24646028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028459, intron 1 of 10)	intron (NM_028459, intron 1 of 10)	19467.0	NM_001167745	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54718980-4	chr6	54718478	54719478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37354.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	1.5	14.0	18.0	4.0	0.5	0.0
Merged-chr8-70872093-2	chr8	70871593	70872593	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026964, intron 1 of 4)	intron (NM_026964, intron 1 of 4)	1397.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	0.0	0.0	0.0	0.0	3.5	0.0
Merged-chr5-135537486-4	chr5	135536989	135537989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	7633.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38797287-4	chr2	38796796	38797796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010264, intron 3 of 10)	intron (NM_010264, intron 3 of 10)	-12781.0	NM_001159549	14536.0	Mm.439703	NM_010264	ENSMUSG00000063972	Nr6a1	1700113M01Rik|Gcnf|NCNF|RTR	nuclear receptor subfamily 6, group A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153333080-2	chr1	153332580	153333580	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010683)	promoter-TSS (NM_010683)	-294.0	NM_010683	226519.0	Mm.1249	NM_010683	ENSMUSG00000026478	Lamc1	Lamb2	laminin, gamma 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74957086-4	chr15	74956540	74957540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008529, intron 1 of 3)	intron (NM_008529, intron 1 of 3)	1934.0	NM_001164040	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	59.0	156.0	112.0	44.0	123.0	127.5
Merged-chr13-14613130-4	chr13	14612632	14613632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029271)	promoter-TSS (NM_029271)	-95.0	NM_029271	75398.0	Mm.36511	NM_029271	ENSMUSG00000015672	Mrpl32	0610033O15Rik	mitochondrial ribosomal protein L32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24454464-4	chr5	24453970	24454970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359881, intron 1 of 15)	intron (NM_001359881, intron 1 of 15)	2293.0	NM_139153	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-125560476-4	chr1	125559971	125560971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356294)	promoter-TSS (NM_001356294)	-124.0	NM_001356294	74150.0	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34918645-4	chr7	34918138	34919138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 1 of 14)	intron (NM_008820, intron 1 of 14)	6231.0	NM_008820	18624.0	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-144126182-4	chr5	144125687	144126687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081109, intron 1 of 13)	intron (NM_001081109, intron 1 of 13)	25751.0	NM_001081109	231876.0	Mm.288726	NM_001081109	ENSMUSG00000038970	Lmtk2	2900041G10Rik|A330101P12Rik|BREK|KPI-2|KPI2|aatyk2|cprk	lemur tyrosine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-55986720-4	chr7	55986240	55987240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153578, intron 3 of 4)	intron (NM_153578, intron 3 of 4)	24209.0	NR_015495	320845.0	Mm.274484	NM_001033396		A230056P14Rik	-	RIKEN cDNA A230056P14 gene	ncRNA	0.0	2.5	2.5	0.0	1.5	2.0
Merged-chr17-27173866-4	chr17	27173357	27174357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6093.0	NM_173027	271424.0	Mm.209679	NM_173027	ENSMUSG00000024210	Ip6k3	D830007E07Rik|Ihpk3	inositol hexaphosphate kinase 3	protein-coding	6.0	10.5	17.0	10.5	18.0	15.5
Merged-chr2-94438841-2	chr2	94438341	94439341	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001349003)	promoter-TSS (NM_001349003)	-655.0	NM_001349003	11800.0	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-133092471-4	chr3	133091978	133092978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026231)	promoter-TSS (NM_026231)	-439.0	NM_001356309	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103583475-4	chr2	103582966	103583966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	17156.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	0.0	2.0	0.0	3.5	0.0	2.0
Merged-chr12-111148891-2	chr12	111148391	111149391	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17479.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58232616-4	chr9	58232095	58233095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178087, intron 4 of 8)	intron (NM_178087, intron 4 of 8)	11445.0	NR_105806	102466639.0		NR_105806	ENSMUSG00000098886	Mir6385	Gm28021|mmu-mir-6385	microRNA 6385	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-16817729-2	chr15	16817229	16818229	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009869, intron 1 of 10)	ORR1E|LTR|ERVL-MaLR	39628.0	NM_009869	12565.0	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-72195333-4	chr4	72194836	72195836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285530, intron 4 of 17)	intron (NM_001285530, intron 4 of 17)	5557.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22314195-4	chr9	22313698	22314698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6560.0	NM_145612	235050.0	Mm.306038	NM_145612	ENSMUSG00000066829	Zfp810	BC005471	zinc finger protein 810	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106736454-4	chr11	106735941	106736941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-14785.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34906937-4	chr6	34906418	34907418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013366, intron 3 of 14)	intron (NM_001013366, intron 3 of 14)	3913.0	NM_001013366	101240.0	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69417698-4	chr11	69417225	69418225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4050.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	10.0	54.0	24.0	10.0	31.5	18.5
Merged-chr11-21031992-4	chr11	21031491	21032491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59333.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11331718-4	chr2	11331219	11332219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7770.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71389146-4	chr2	71388650	71389650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026115)	promoter-TSS (NM_026115)	-110.0	NM_026115	107435.0	Mm.272472	NM_026115	ENSMUSG00000027018	Hat1	2410071B14Rik|AA536933|Hat-1|KAT1	histone aminotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-108629772-4	chr5	108629255	108630255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282052)	promoter-TSS (NM_001282052)	22.0	NM_001359924	231580.0	Mm.276647	NM_153569	ENSMUSG00000062234	Gak	D130045N16Rik	cyclin G associated kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36194036-4	chr18	36193534	36194534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167891, intron 1 of 9)	intron (NM_001167891, intron 1 of 9)	3126.0	NM_001167891	100042150.0	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70683720-4	chr11	70683215	70684215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178116, intron 5 of 22)	intron (NM_178116, intron 5 of 22)	4390.0	NM_001190376	216874.0	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78532666-4	chr9	78532150	78533150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50926.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71542824-4	chr8	71542325	71543325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028617)	promoter-TSS (NM_028617)	-105.0	NM_028617	73711.0	Mm.307770	NM_028617	ENSMUSG00000031813	Mvb12a	1110012M11Rik|Fam125a	multivesicular body subunit 12A	protein-coding	43.5	45.0	76.5	42.0	69.5	82.0
Merged-chr7-105639923-2	chr7	105639423	105640423	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360053)	promoter-TSS (NM_001360053)	493.0	NM_029802	76932.0	Mm.41637	NM_029802	ENSMUSG00000030881	Arfip2	2310002N04Rik|POR|Por1	ADP-ribosylation factor interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106818583-4	chr1	106818092	106819092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21867.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	0.0	0.0	0.0	1.5	6.0	0.0
Merged-chr4-116075255-7	chr4	116074687	116075687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025641)	promoter-TSS (NM_025641)	-82.0	NM_153521	230654.0	Mm.3655	NM_153521	ENSMUSG00000028703	Lrrc41	AA409966|AW555107|D630045E04Rik|D730026A16Rik|MUF1	leucine rich repeat containing 41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73148364-4	chr15	73147876	73148876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	36571.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-34067252-4	chr15	34066771	34067771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-15448.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	4.5	10.5	1.0	3.0	7.0	3.5
Merged-chr2-167833744-4	chr2	167833242	167834242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98585.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21745292-4	chr14	21744779	21745779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007268, intron 3 of 7)	MER91C|DNA|hAT-Tip100	-2400.0	NM_013849	27389.0	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-123385993-4	chr3	123385552	123386552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201638)	promoter-TSS (NM_201638)	-62.0	NM_201638	210529.0	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding	89.5	255.5	276.0	29.0	154.0	99.0
Merged-chr12-24572170-4	chr12	24571655	24572655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161406)	promoter-TSS (NM_001161406)	-132.0	NM_001161406	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	5.0	19.0	5.0	0.5	9.5	7.0
Merged-chr5-129020085-4	chr5	129019580	129020580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009391)	promoter-TSS (NM_009391)	-76.0	NM_009391	19384.0	Mm.297440	NM_009391	ENSMUSG00000029430	Ran	-	RAN, member RAS oncogene family	protein-coding	6.0	35.5	18.5	12.5	10.5	10.5
Merged-chr3-30647848-4	chr3	30647349	30648349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027941)	promoter-TSS (NM_027941)	-31.0	NM_027941	71827.0	Mm.45373	NM_027941	ENSMUSG00000027702	Lrrc34	1700007J06Rik|SPATA34	leucine rich repeat containing 34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-98055976-4	chr3	98055450	98056450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 2 of 33)	intron (NM_010928, intron 2 of 33)	42412.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42752746-4	chr19	42752276	42753276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029011)	promoter-TSS (NM_029011)	-1.0	NM_029011	74580.0	Mm.329858	NM_029011	ENSMUSG00000060224	Pyroxd2	3830409H07Rik|4833409A17Rik	pyridine nucleotide-disulphide oxidoreductase domain 2	protein-coding	91.5	194.5	173.0	140.0	177.5	158.0
Merged-chr17-56162398-4	chr17	56161898	56162898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025566)	promoter-TSS (NM_025566)	-93.0	NM_025566	66443.0	Mm.2312	NM_025566	ENSMUSG00000044469	Tnfaip8l1	2600017J23Rik|TIPE1	tumor necrosis factor, alpha-induced protein 8-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79413945-4	chr15	79413458	79414458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10655.0	NM_172608	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	67.5	263.0	118.0	98.5	276.5	135.0
Merged-chr13-58448242-4	chr13	58447699	58448699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44856.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13587280-4	chr9	13586784	13587784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32705.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	70.0	222.5	170.5	136.5	172.5	121.0
Merged-chr9-107950942-4	chr9	107950437	107951437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011634)	promoter-TSS (NM_011634)	-26.0	NM_011634	22036.0	Mm.297870	NM_011634	ENSMUSG00000032586	Traip	Trip	TRAF-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-42887631-4	chr17	42887125	42888125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11201.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	24.0	50.0	35.5	47.5	62.0	51.0
Merged-chr11-9337332-4	chr11	9336778	9337778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 27 of 61)	intron (NM_178259, intron 27 of 61)	145336.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	36.0	95.5	35.5	29.5	73.5	33.0
Merged-chr10-125966180-4	chr10	125965668	125966668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177152)	promoter-TSS (NM_177152)	-51.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	5.0	2.0	0.0	2.0	5.5	6.5
Merged-chr13-33004635-4	chr13	33004125	33005125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009256)	promoter-TSS (NM_009256)	84.0	NM_009256	20723.0	Mm.245041	NM_009256	ENSMUSG00000045827	Serpinb9	BB283241|CAP-3|CAP3|PI-9|PI9|Spi6|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9	protein-coding	13.5	11.0	11.5	8.5	10.5	2.0
Merged-chr5-148464629-4	chr5	148464167	148465167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64763.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99382167-2	chr7	99381667	99382667	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001362166, exon 1 of 19)	5' UTR (NM_001362166, exon 1 of 19)	649.0	NM_001362166	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22653389-4	chr8	22652910	22653910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011130)	promoter-TSS (NM_011130)	27.0	NM_011130	18970.0	Mm.123211	NM_011130	ENSMUSG00000031536	Polb	A430088C08Rik	polymerase (DNA directed), beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-83273099-2	chr4	83272599	83273599	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 2 of 19)	RMER17B|LTR|ERVK	51090.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	1.0	0.0	3.5	2.5	10.5	7.5
Merged-chr11-32881790-3	chr11	32881291	32882291	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57197.0	NM_027050	69351.0	Mm.65488	NM_027050	ENSMUSG00000020270	Smim23	1700008A04Rik	small integral membrane protein 23	protein-coding	0.0	0.0	0.0	3.0	3.5	0.5
Merged-chr9-63137182-2	chr9	63136682	63137682	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163755)	TTS (NM_001163755)	9798.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24100541-4	chr5	24100051	24101051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026448)	promoter-TSS (NM_026448)	-39.0	NM_026448	52323.0	Mm.273768	NM_026448	ENSMUSG00000028986	Klhl7	2700038B03Rik|D5Ertd363e|SBBI26	kelch-like 7	protein-coding	22.5	27.0	23.5	12.5	31.0	25.5
Merged-chr18-46447796-4	chr18	46447290	46448290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18026.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29767920-2	chr6	29767427	29768427	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021414)	promoter-TSS (NM_021414)	-516.0	NM_021414	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	66.0	130.0	71.0	67.0	167.5	116.5
Merged-chr4-149173859-4	chr4	149173341	149174341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7136.0	NM_001081274	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61452916-4	chr10	61452414	61453414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010124)	promoter-TSS (NM_010124)	-245.0	NM_010124	13688.0	Mm.259516	NM_010124	ENSMUSG00000020091	Eif4ebp2	2810011I19Rik|4E-BP2|AA792569|BC010348|PHAS-II	eukaryotic translation initiation factor 4E binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-195241706-4	chr1	195241179	195242179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-64964.0	NM_007758	12902.0	Mm.235387	NM_007758	ENSMUSG00000026616	Cr2	C3DR|CD21|CD35|Cr-1|Cr-2|Cr1	complement receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108855483-2	chr9	108854983	108855983	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134420, intron 1 of 17)	intron (NM_134420, intron 1 of 17)	1440.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-41003208-4	chr8	41002698	41003698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 7 of 13)	L1MB2|LINE|L1	-14270.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	175.0	173.5	177.5	77.5	126.0	83.5
Merged-chr6-47835678-4	chr6	47835156	47836156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027477)	promoter-TSS (NM_027477)	-5.0	NM_027477	272347.0	Mm.169059	NM_027477	ENSMUSG00000062519	Zfp398	5730513I23Rik	zinc finger protein 398	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108743379-4	chr8	108742867	108743867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	28723.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61971651-4	chr14	61971166	61972166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-289293.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40247477-3	chr19	40246980	40247980	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016861, intron 3 of 6)	intron (NM_016861, intron 3 of 6)	24136.0	NM_016861	54132.0	Mm.5567	NM_016861	ENSMUSG00000055044	Pdlim1	CLP36|Clim1|mClim1	PDZ and LIM domain 1 (elfin)	protein-coding	0.5	0.0	0.0	0.5	0.0	0.0
Merged-chr7-130646241-4	chr7	130645797	130646797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004468, intron 3 of 21)	CpG	-46259.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55689764-4	chr19	55689261	55690261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	12443.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	37.5	79.5	26.5	45.0	45.0	68.0
Merged-chr7-83631926-4	chr7	83631425	83632425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023377)	promoter-TSS (NM_023377)	-92.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32712270-4	chr19	32711734	32712734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026487)	promoter-TSS (NM_026487)	64.0	NM_026487	67979.0	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66834839-4	chr9	66834337	66835337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026674)	promoter-TSS (NM_026674)	-131.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25706500-4	chr7	25706016	25707016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12537.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59177463-4	chr2	59176924	59177924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	16574.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27745291-2	chr2	27744791	27745791	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 4 of 9)	intron (NM_001290481, intron 4 of 9)	34708.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-34643363-4	chr4	34642872	34643872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151507, intron 8 of 19)	intron (NR_151507, intron 8 of 19)	28415.0	NM_181406	109093.0	Mm.22363	NM_181406	ENSMUSG00000028292	Rars2	1500002I10Rik|PRO1992|Rarsl	arginyl-tRNA synthetase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109019731-4	chr8	109019215	109020215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-55507.0	NR_126329	628686.0	Mm.203332	NR_126329	ENSMUSG00000097393	D030068K23Rik	-	RIKEN cDNA D030068K23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71256976-2	chr17	71256465	71257465	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357338, intron 4 of 7)	intron (NM_001357338, intron 4 of 7)	52311.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	3.5	4.5	3.5	27.0	71.0	59.0
Merged-chr2-145952929-3	chr2	145952433	145953433	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175280, intron 6 of 6)	intron (NM_175280, intron 6 of 6)	18149.0	NM_175280	78774.0	Mm.136347	NM_175280	ENSMUSG00000037143	Cfap61	4930529M08Rik|BB178539|BC024760	cilia and flagella associated protein 61	protein-coding	25.5	27.0	22.0	4.5	0.0	2.0
Merged-chr16-18392541-4	chr16	18392046	18393046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001272032)	promoter-TSS (NM_001272032)	-17.0	NM_001272031	11877.0	Mm.293599	NM_033474	ENSMUSG00000000325	Arvcf	-	armadillo repeat gene deleted in velocardiofacial syndrome	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91688827-4	chr16	91688324	91689324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021720)	promoter-TSS (NM_021720)	-74.0	NR_040389	100038392.0	Mm.440384	NR_040389	ENSMUSG00000085169	Gm10785	-	predicted gene 10785	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154791379-4	chr2	154790865	154791865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001139511, exon 1 of 8)	5' UTR (NM_001139511, exon 1 of 8)	255.0	NM_001139511	19383.0	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	0.0	6.0	2.0	0.0	1.0	2.5
Merged-chr7-28797559-2	chr7	28797059	28798059	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358916, intron 10 of 11)	intron (NM_001358916, intron 10 of 11)	8590.0	NM_177158	320435.0	Mm.74632	NM_177158	ENSMUSG00000051735	Rinl	5830482F20Rik|9930116N10Rik	Ras and Rab interactor-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45924171-4	chr7	45923684	45924684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2758.0	NM_010129	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	15.5	37.0	26.5	16.0	75.5	27.0
Merged-chr11-26602368-2	chr11	26601865	26602865	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-8445.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	19.0	27.5	51.5	9.0	35.0	50.5
Merged-chr11-54438072-4	chr11	54437571	54438571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173753)	promoter-TSS (NM_173753)	-108.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-62858661-4	chr5	62858155	62859155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 7 of 8)	intron (NM_001170705, intron 7 of 8)	44832.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	10.5	14.5	15.5	21.5	32.0	16.5
Merged-chr9-121642136-4	chr9	121641636	121642636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011703)	promoter-TSS (NM_011703)	-40.0	NM_001357346	69032.0	Mm.33351	NM_026915	ENSMUSG00000032530	Lyzl4	1810009N24Rik|AI504271|Lyc4|Lyza	lysozyme-like 4	protein-coding	12.0	40.5	5.0	6.0	22.0	12.5
Merged-chr8-47534974-2	chr8	47534474	47535474	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_203507, intron 1 of 6)	intron (NM_203507, intron 1 of 6)	1329.0	NM_203507	192174.0	Mm.273081	NM_203507	ENSMUSG00000031568	Rwdd4a	BC016198|Gm1942|Rwdd4	RWD domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133241571-7	chr4	133240981	133241981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016693, intron 1 of 28)	CpG	663.0	NM_016693	53608.0	Mm.36640	NM_016693	ENSMUSG00000028862	Map3k6	Ask2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding	50.0	127.0	45.5	2.5	3.0	6.0
Merged-chr11-18970049-4	chr11	18969549	18970549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010789, intron 7 of 11)	intron (NM_010789, intron 7 of 11)	48920.0	NM_001193271	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	0.0	1.0	0.5	0.0	0.0	2.0
Merged-chr2-173018761-4	chr2	173018267	173019267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3135.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	3.0	2.5	2.5	4.5	0.0	0.0
Merged-chr6-116338040-4	chr6	116337545	116338545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302383)	promoter-TSS (NM_001302383)	23.0	NM_001302383	71779.0	Mm.27064	NM_027920	ENSMUSG00000025702	March8	1300017E09Rik|MARCH-VIII|Mir	membrane-associated ring finger (C3HC4) 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117849188-4	chr11	117848698	117849698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009689)	promoter-TSS (NM_009689)	-39.0	NM_001012273	11799.0	Mm.8552	NM_009689	ENSMUSG00000017716	Birc5	AAC-11|Api4|TIAP|survivin40	baculoviral IAP repeat-containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60021776-4	chr2	60021282	60022282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 2 of 35)	intron (NM_001001182, intron 2 of 35)	103958.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155770223-6	chr4	155769696	155770696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_147776, exon 4 of 4)	3' UTR (NM_147776, exon 4 of 4)	4365.0	NM_147776	246228.0	Mm.26515	NM_147776	ENSMUSG00000042116	Vwa1	4932416A11Rik|WARP	von Willebrand factor A domain containing 1	protein-coding	14.5	43.0	36.5	8.5	37.0	36.0
Merged-chr18-25681505-7	chr18	25680894	25681894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362322, intron 1 of 12)	intron (NM_001362322, intron 1 of 12)	-1646.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156471278-4	chr1	156470783	156471783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 1 of 15)	intron (NM_009230, intron 1 of 15)	3045.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	147.0	362.5	330.0	184.0	313.0	254.5
Merged-chr12-85490957-2	chr12	85490457	85491457	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17067.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118083207-4	chr10	118082703	118083703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58584.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	121.5	296.5	236.0	153.0	508.5	279.5
Merged-chr18-38542738-4	chr18	38542237	38543237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58531.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69091980-2	chr11	69091480	69092480	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009497, exon 5 of 5)	3' UTR (NM_009497, exon 5 of 5)	3452.0	NM_009497	22318.0	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|Vamp-2|sybII	vesicle-associated membrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-20882319-4	chr5	20881827	20882827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177601)	promoter-TSS (NM_177601)	-126.0	NM_177601	212090.0	Mm.347525	NM_177601	ENSMUSG00000045435	Tmem60	BC027828	transmembrane protein 60	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80209023-4	chr11	80208514	80209514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021536)	promoter-TSS (NM_021536)	-41.0	NM_001163354	59040.0	Mm.489674	NM_021536	ENSMUSG00000017686	Rhot1	2210403N23Rik|AA415293|AF244542|AI834919|Arht1|C430039G08Rik|Miro1	ras homolog family member T1	protein-coding	9.5	43.0	29.0	4.0	28.5	30.5
Merged-chr11-103320422-4	chr11	103319942	103320942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24260.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	8.5	3.5	1.0	8.0	1.5	0.0
Merged-chr7-114562804-8	chr7	114562310	114563310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177382, exon 1 of 5)	exon (NM_177382, exon 1 of 5)	162.0	NR_110407	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	93.0	107.0	73.5	27.5	89.0	71.0
Merged-chr19-5802580-4	chr19	5802080	5803080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002847)	promoter-TSS (NR_002847)	92.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95839704-4	chr16	95839218	95840218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040485, intron 3 of 3)	MLT1A1|LTR|ERVL-MaLR	58995.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-85879287-4	chr15	85878795	85879795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028063)	promoter-TSS (NM_028063)	-32.0	NM_028063	72026.0	Mm.158211	NM_028063	ENSMUSG00000022386	Trmu	1110005N20Rik|1600025P05Rik|AI314320|Trmt1	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84438208-4	chr10	84437714	84438714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 1 of 6)	intron (NM_001004363, intron 1 of 6)	2257.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-136894477-4	chr7	136893981	136894981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008598)	promoter-TSS (NM_008598)	-130.0	NM_008598	17314.0	Mm.440219	NM_008598	ENSMUSG00000054612	Mgmt	AGT|AI267024|Agat	O-6-methylguanine-DNA methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-43353843-4	chr11	43353357	43354357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20604.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121377132-4	chr10	121376648	121377648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 5 of 13)	intron (NM_029364, intron 5 of 13)	12058.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	7.5	22.0	4.5	5.0	5.5	7.0
Merged-chr17-27635332-4	chr17	27634822	27635822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025963)	promoter-TSS (NM_025963)	-80.0	NM_025963	67097.0	Mm.275810	NM_025963	ENSMUSG00000052146	Rps10	2210402A09Rik	ribosomal protein S10	protein-coding	7.5	14.5	21.5	3.5	33.0	19.5
Merged-chr15-100678742-4	chr15	100678250	100679250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033612, intron 6 of 7)	intron (NM_033612, intron 6 of 7)	9170.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	23.5	52.5	34.0	11.0	72.5	39.5
Merged-chr2-91193810-2	chr2	91193310	91194310	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355279, intron 1 of 9)	intron (NM_001355279, intron 1 of 9)	1225.0	NM_013839	22259.0	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	18.0	17.5	23.0	1.5	17.5	17.5
Merged-chr17-5189866-4	chr17	5189360	5190360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	CpG	194786.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73964458-4	chr12	73963943	73964943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178392)	promoter-TSS (NM_178392)	-87.0	NM_178392	75627.0	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7589818-4	chr10	7589325	7590325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359742)	promoter-TSS (NM_001359742)	25.0	NM_001359743	237253.0	Mm.206759	NM_172784	ENSMUSG00000019796	Lrp11	1700034J19Rik|6330533B21|9830160H19Rik	low density lipoprotein receptor-related protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105609820-2	chr8	105609320	105610320	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081241, intron 1 of 21)	L2|LINE|L2	4591.0	NM_001081241	75687.0	Mm.41261	NM_001081241	ENSMUSG00000038604	Ripor1	2310066E14Rik|AI837433|Fam65a	RHO family interacting cell polarization regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17827023-4	chr17	17826607	17827607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3081.0	NR_029536	387230.0		NR_029536	ENSMUSG00000065396	Mir99b	Mirn99b|mmu-mir-99b	microRNA 99b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182124725-4	chr1	182124252	182125252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012058)	promoter-TSS (NM_012058)	15.0	NM_012058	27058.0	Mm.273196	NM_012058	ENSMUSG00000026511	Srp9	9kDa	signal recognition particle 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-73323422-2	chr11	73322922	73323922	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023113, intron 1 of 5)	intron (NM_023113, intron 1 of 5)	1215.0	NM_023113	11484.0	Mm.293574	NM_023113	ENSMUSG00000020774	Aspa	Acy-2|Acy2|nur7	aspartoacylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66814163-4	chr15	66813674	66814674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	17655.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40846776-4	chr4	40846301	40847301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022305, intron 1 of 5)	MTD|LTR|ERVL-MaLR	3337.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-92027912-2	chr13	92027412	92028412	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39870.0	NM_009027	19418.0	Mm.248630	NM_009027	ENSMUSG00000021708	Rasgrf2	6330417G04Rik|AW048350|Grf2|Ras-GRF2	RAS protein-specific guanine nucleotide-releasing factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-23687417-4	chr19	23686939	23687939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028208)	promoter-TSS (NM_028208)	39.0	NM_028208	72351.0	Mm.474795	NM_028208	ENSMUSG00000074925	Ptar1	1700084D09Rik|2010013L17Rik|4930428J16Rik|AI449677	protein prenyltransferase alpha subunit repeat containing 1	protein-coding	1.5	8.5	10.0	0.5	15.5	8.0
Merged-chr12-24603319-2	chr12	24602819	24603819	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145890, intron 7 of 13)	intron (NM_145890, intron 7 of 13)	22600.0	NM_145890	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	4.5	0.0	7.0	4.0	0.0	0.0
Merged-chr3-27236996-4	chr3	27236474	27237474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 3 of 4)	MTC|LTR|ERVL-MaLR	53970.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27350515-4	chr2	27349999	27350999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 1 of 29)	RMER1C|Other|Other	77109.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13155529-4	chr8	13154982	13155982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3679.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75182650-2	chr14	75182150	75183150	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	46225.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29864480-4	chr11	29863962	29864962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 7 of 41)	Lx7|LINE|L1	-38794.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	6.0	6.5	3.0	6.0	8.0	3.0
Merged-chr11-61793581-4	chr11	61793073	61794073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013881, intron 20 of 26)	intron (NM_013881, intron 20 of 26)	-31485.0	NM_001164243	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-58912181-4	chr4	58911683	58912683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355697)	promoter-TSS (NM_001355697)	-253.0	NM_001355696	230249.0	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|Ecpas|mKIAA0368	expressed sequence AI314180	protein-coding	9.5	22.5	27.0	4.5	15.5	13.0
Merged-chr16-76607453-4	chr16	76606967	76607967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58672.0	NR_155449	102632730.0		NR_155449		Gm30726	-	predicted gene, 30726	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172482401-2	chr1	172481900	172482900	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033608)	promoter-TSS (NM_033608)	83.0	NM_033608	93842.0	Mm.214530	NM_033608	ENSMUSG00000037995	Igsf9	644ETD8|Dasm1|Kiaa1355-hp|NRT1|Ncaml|mKIAA1355	immunoglobulin superfamily, member 9	protein-coding	0.0	4.0	2.0	4.5	7.0	4.0
Merged-chr6-52714346-4	chr6	52713821	52714821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355596, exon 1 of 18)	5' UTR (NM_001355596, exon 1 of 18)	156.0	NM_001355596	52440.0	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-27175225-4	chr8	27174734	27175734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080813)	promoter-TSS (NM_001080813)	-588.0	NM_001080813	75767.0	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81203723-4	chr7	81203184	81204184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR10D2|LTR|ERVK	-10120.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74381642-4	chr1	74381122	74382122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013612, intron 8 of 14)	intron (NM_013612, intron 8 of 14)	6419.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-33722760-2	chr5	33722260	33723260	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359036, intron 2 of 17)	CpG	454.0	NM_001163216	14184.0	Mm.6904	NM_008010	ENSMUSG00000054252	Fgfr3	CD333|FR3|Fgfr-3|Flg-2|HBGFR|Mfr3|sam3	fibroblast growth factor receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-26863704-4	chr18	26863190	26864190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1109533.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-131388467-4	chr6	131388016	131389016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139117)	promoter-TSS (NM_139117)	-66.0	NM_011733	56449.0	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	5.0	6.0	21.5	10.5	4.0	1.0
Merged-chr1-136683942-4	chr1	136683450	136684450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045325, intron 1 of 2)	intron (NR_045325, intron 1 of 2)	321.0	NR_045325	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83742238-2	chr7	83741738	83742738	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6699.0	NM_010551	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	11.0	50.5	23.0	18.0	15.5	8.5
Merged-chr5-129005272-1	chr5	129004772	129005772	+	1000.0	f1_balb.idr	intron (NR_152615, intron 1 of 11)	intron (NR_152615, intron 1 of 11)	3300.0	NR_152615	13852.0	Mm.260716	NM_007941	ENSMUSG00000029428	Stx2	AW538950|Epim|G1-536-1|Syn-2|repro34	syntaxin 2	protein-coding	3.5	0.5	1.0	8.0	7.5	3.5
Merged-chr3-108554760-4	chr3	108554226	108555226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028538)	promoter-TSS (NR_028538)	-324.0	NR_028538	100217438.0		NR_028538		Scarna2	MBII-382	small Cajal body-specific RNA 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90577765-4	chr2	90577254	90578254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	B4A|SINE|B4	2893.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149780775-4	chr4	149780281	149781281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD|LINE|L1	-6514.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	33.0	66.5	35.5	47.5	144.0	66.0
Merged-chr1-58724284-4	chr1	58723806	58724806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	-6246.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107569055-4	chr9	107568558	107569558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010489)	promoter-TSS (NM_010489)	-105.0	NM_010489	15587.0	Mm.4834	NM_010489	ENSMUSG00000010047	Hyal2	AI256841|AU020858|AW555733	hyaluronoglucosaminidase 2	protein-coding	36.0	63.0	70.5	23.5	39.5	52.0
Merged-chr5-67758130-2	chr5	67757633	67758633	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 14 of 36)	intron (NM_001038999, intron 14 of 36)	89298.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	12.0	8.0	19.0	10.5	2.5	5.0
Merged-chr11-110337645-4	chr11	110337098	110338098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_147219, exon 1 of 39)	5' UTR (NM_147219, exon 1 of 39)	118.0	NM_147219	217265.0	Mm.41942	NM_147219	ENSMUSG00000018800	Abca5	ABC13|B930033A02Rik|mKIAA1888	ATP-binding cassette, sub-family A (ABC1), member 5	protein-coding	3.0	0.0	1.0	5.0	3.0	0.5
Merged-chr13-23885731-4	chr13	23885245	23886245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_121611, intron 10 of 12)	intron (NR_121611, intron 10 of 12)	15472.0	NM_001170638	20504.0	Mm.2656	NM_009198	ENSMUSG00000021335	Slc17a1	NAPI-1|Napi1|Npt1	solute carrier family 17 (sodium phosphate), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-123267977-4	chr3	123267492	123268492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027135, intron 1 of 22)	CpG	496.0	NM_027135	69608.0	Mm.29293	NM_027135	ENSMUSG00000039234	Sec24d	2310020L09Rik|Gm1349	Sec24 related gene family, member D (S. cerevisiae)	protein-coding	74.5	248.0	240.0	73.0	228.5	196.5
Merged-chr16-17619435-4	chr16	17618932	17619932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029945)	promoter-TSS (NM_029945)	78.0	NM_001164609	77626.0	Mm.34659	NM_029945	ENSMUSG00000005899	Smpd4	4122402O22Rik	sphingomyelin phosphodiesterase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-121214705-2	chr4	121214205	121215205	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001346660, intron 1 of 7)	CpG	379.0	NM_001346660	109263.0	Mm.215745	NM_001081013	ENSMUSG00000049878	Rlf	9230110M18Rik|AI195322|MommeD8	rearranged L-myc fusion sequence	protein-coding	31.0	69.5	57.5	20.0	64.0	76.5
Merged-chr15-80258856-1	chr15	80258356	80259356	+	1000.0	f1_balb.idr	Intergenic	Intergenic	3672.0	NM_009716	11911.0	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	13.0	35.5	11.0	9.0	13.0	12.5
Merged-chr8-110847093-4	chr8	110846622	110847622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133953)	promoter-TSS (NM_133953)	98.0	NM_133973	102339.0	Mm.272930	NM_133973	ENSMUSG00000031753	Cog4	AW554810|D8Ertd515e	component of oligomeric golgi complex 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-38560787-4	chr5	38560295	38561295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011715, intron 2 of 14)	intron (NM_011715, intron 2 of 14)	800.0	NM_011715	22388.0	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41372564-4	chr19	41372056	41373056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	12514.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	3.5	7.5	1.5	2.0	8.5	10.0
Merged-chr6-90604788-4	chr6	90604282	90605282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027868)	promoter-TSS (NM_027868)	-98.0	NM_027868	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-151044800-4	chr4	151044295	151045295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289878)	promoter-TSS (NM_001289878)	-130.0	NM_001289878	18628.0	Mm.121361	NM_011067	ENSMUSG00000028957	Per3	2810049O06Rik|mPer3	period circadian clock 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51529046-4	chr10	51528558	51529558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MuRRS4-int|LTR|ERV1	38160.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46705081-4	chr17	46704593	46705593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009358)	promoter-TSS (NM_009358)	-67.0	NM_001357684	21770.0	Mm.295009	NM_009358	ENSMUSG00000059409	Ppp2r5d	B'delta|TEG-271|Tex271	protein phosphatase 2, regulatory subunit B', delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30882299-2	chr7	30881799	30882799	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1957.0	NM_001043317	12483.0	Mm.260994	NM_009845	ENSMUSG00000030577	Cd22	A530093D23|Lyb-8|Lyb8	CD22 antigen	protein-coding	0.0	0.0	1.5	0.0	5.0	0.5
Merged-chr1-64189725-4	chr1	64189240	64190240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-68351.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142393285-4	chr7	142392778	142393778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5408.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	71.0	154.0	95.5	41.5	70.5	36.5
Merged-chr8-117364995-4	chr8	117364495	117365495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	15825.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146634458-4	chr6	146633969	146634969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026281, exon 1 of 12)	5' UTR (NM_026281, exon 1 of 12)	123.0	NM_026281	67623.0	Mm.278037	NM_026281	ENSMUSG00000040234	Tm7sf3	2010003B14Rik|NARP1	transmembrane 7 superfamily member 3	protein-coding	37.5	33.0	48.5	35.0	71.0	67.5
Merged-chr13-9760219-4	chr13	9759725	9760725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347474, intron 1 of 14)	intron (NM_001347474, intron 1 of 14)	3585.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90934312-2	chr16	90933812	90934812	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026502, intron 1 of 6)	CpG	537.0	NM_026502	68001.0	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-82863304-4	chr8	82862815	82863815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177378)	promoter-TSS (NM_177378)	-41.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	11.5	45.5	22.5	9.5	32.5	26.0
Merged-chr10-82178572-5	chr10	82178034	82179034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	50521.0	NM_001163064	216177.0	Mm.482395	NM_001163064	ENSMUSG00000078435	AU041133	-	expressed sequence AU041133	protein-coding	56.5	70.5	75.0	42.0	149.0	79.0
Merged-chr5-140765641-4	chr5	140765140	140766140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 2 of 3)	intron (NM_010302, intron 2 of 3)	41513.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78935076-4	chr15	78934537	78935537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133800, exon 1 of 6)	exon (NM_133800, exon 1 of 6)	104.0	NM_133800	97961.0	Mm.157216	NM_133800	ENSMUSG00000033099	Nol12	C78541|Nop25	nucleolar protein 12	protein-coding	19.5	41.0	39.0	31.0	61.5	65.0
Merged-chr2-4562542-2	chr2	4562042	4563042	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 1 of 11)	intron (NM_001177844, intron 1 of 11)	2788.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79909307-4	chr10	79908791	79909791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359629)	promoter-TSS (NM_001359629)	-353.0	NM_001359629	216154.0	Mm.260089	NM_198107	ENSMUSG00000013833	Med16	95kDa|A630083L04|DRIP92|Thrap5|Trap95	mediator complex subunit 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34977375-4	chr2	34976878	34977878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15606.0	NM_001326601	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34162967-4	chr13	34162405	34163405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001101430)	promoter-TSS (NM_001101430)	-59.0	NM_001101430	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	43.5	77.0	88.0	35.0	99.5	76.0
Merged-chr12-80946163-4	chr12	80945677	80946677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045057)	promoter-TSS (NR_045057)	678.0	NM_001347415	20384.0	Mm.43331	NM_009159	ENSMUSG00000021134	Srsf5	Sfrs5	serine/arginine-rich splicing factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59082145-4	chr15	59081642	59082642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146180)	promoter-TSS (NM_001146180)	-116.0	NM_144800	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28179987-4	chr7	28179483	28180483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271370)	promoter-TSS (NM_001271370)	-333.0	NM_001271370	13549.0	Mm.57249	NM_010092	ENSMUSG00000002409	Dyrk1b	Mirk	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152625065-5	chr1	152624490	152625490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016846, exon 1 of 18)	exon (NM_016846, exon 1 of 18)	227.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85525194-4	chr11	85524685	85525685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 16 of 25)	intron (NM_138681, intron 16 of 25)	172021.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-71864044-4	chr12	71863568	71864568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026102, intron 1 of 25)	intron (NM_026102, intron 1 of 25)	-25475.0	NM_001286452	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	1.0	10.5	5.0	6.0	6.5	3.0
Merged-chr2-35495651-4	chr2	35495151	35496151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E3|LTR|ERVL-MaLR	-34202.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34464641-4	chr19	34464158	34465158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	10477.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34781592-4	chr2	34781116	34782116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145522, intron 6 of 7)	intron (NM_145522, intron 6 of 7)	9526.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-63256959-4	chr13	63256445	63257445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	16916.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	6.5	47.5	33.0	5.0	51.5	36.5
Merged-chr8-26976050-4	chr8	26975552	26976552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1284.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31111689-1	chr17	31111189	31112189	+	1000.0	f1_c57bl6.idr	intron (NM_009593, intron 13 of 14)	intron (NM_009593, intron 13 of 14)	17922.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	6.5	2.0	12.5	1.0	19.5	12.5
Merged-chr18-66437534-4	chr18	66437034	66438034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21070.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5688638-4	chr18	5688071	5689071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360981, intron 2 of 8)	MTD|LTR|ERVL-MaLR	95924.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	25.0	19.0	18.0	26.5	29.5	25.5
Merged-chr6-37442355-4	chr6	37441843	37442843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178661)	promoter-TSS (NM_178661)	-195.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52198653-4	chr3	52198157	52199157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69680.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23843537-4	chr18	23843044	23844044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 3 of 7)	intron (NM_001162941, intron 3 of 7)	39574.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-75273744-4	chr9	75273239	75274239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081322, intron 19 of 40)	intron (NM_001081322, intron 19 of 40)	-32549.0	NM_010313	14697.0	Mm.17604	NM_010313	ENSMUSG00000032192	Gnb5	GBS|Gbeta5|flr	guanine nucleotide binding protein (G protein), beta 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180417336-4	chr1	180416835	180417835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 4 of 7)	intron (NM_001081175, intron 4 of 7)	66169.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121596772-4	chr5	121596280	121597280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-2956.0	NM_001308450	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	9.5	31.0	11.5	3.0	22.5	19.0
Merged-chr17-33820171-1	chr17	33819671	33820671	+	1000.0	f1_c57bl6.idr	intron (NM_030697, intron 7 of 10)	B4A|SINE|B4	4391.0	NM_016844	54127.0	Mm.352374	NM_016844	ENSMUSG00000067288	Rps28	-	ribosomal protein S28	protein-coding	1.5	0.0	1.0	2.0	3.5	3.5
Merged-chr17-15826064-3	chr17	15825593	15826593	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178615, exon 1 of 3)	exon (NM_178615, exon 1 of 3)	493.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60776837-4	chr11	60776331	60777331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175491)	promoter-TSS (NM_175491)	534.0	NM_009410	21975.0	Mm.10708	NM_009410	ENSMUSG00000002814	Top3a	-	topoisomerase (DNA) III alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132255036-2	chr2	132254536	132255536	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Kanga1|DNA|TcMar-Tc2	-1856.0	NM_011045	18538.0	Mm.7141	NM_011045	ENSMUSG00000027342	Pcna	-	proliferating cell nuclear antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33769653-2	chr16	33769153	33770153	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-24384.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41348029-4	chr4	41347531	41348531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290454)	promoter-TSS (NM_001290454)	-965.0	NM_001355509	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124741500-1	chr6	124741000	124742000	+	1000.0	f0_c57.idr	promoter-TSS (NM_013535)	promoter-TSS (NM_013535)	-421.0	NM_013535	14790.0	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96691146-4	chr10	96690669	96691669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74168.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109704713-4	chr8	109704186	109705186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286393)	promoter-TSS (NM_001286393)	-860.0	NM_001286393	75871.0	Mm.180410	NM_029468	ENSMUSG00000031728	Zfp821	4930566A11Rik|Znf821	zinc finger protein 821	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130795673-2	chr4	130795173	130796173	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	3136.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88902883-2	chr6	88902383	88903383	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011906, intron 1 of 11)	intron (NM_011906, intron 1 of 11)	632.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34261660-4	chr17	34261110	34262110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1617.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	82.5	269.0	190.5	115.0	346.0	206.5
Merged-chr13-97187886-4	chr13	97187404	97188404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010422, intron 5 of 13)	intron (NM_010422, intron 5 of 13)	10453.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-56161030-4	chr9	56160505	56161505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019793)	promoter-TSS (NM_019793)	65.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-81065057-4	chr17	81064556	81065556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028138)	promoter-TSS (NM_028138)	29.0	NM_028138	72167.0	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-151979328-2	chr2	151978828	151979828	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146127, intron 1 of 1)	MIRc|SINE|MIR	891.0	NM_146127	73847.0	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-81262992-3	chr3	81262481	81263481	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	226565.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	0.5	4.0	6.5	0.5	15.0	5.5
Merged-chr12-4817466-4	chr12	4816948	4817948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025323)	promoter-TSS (NM_025323)	-160.0	NM_025323	66055.0	Mm.102627	NM_025323	ENSMUSG00000037361	Sf3b6	0610009D07Rik|6030419K15Rik|AV001342|Sf3b14	splicing factor 3B, subunit 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125215499-4	chr6	125215010	125216010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009496)	promoter-TSS (NM_009496)	-71.0	NM_001080557	22317.0	Mm.32321	NM_009496	ENSMUSG00000030337	Vamp1	Syb-1|Syb1|VAMP-1|lew	vesicle-associated membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79996446-4	chr10	79995953	79996953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-1155.0	NM_001347081	27403.0	Mm.103351	NM_013850	ENSMUSG00000035722	Abca7	ABCX|Abc51	ATP-binding cassette, sub-family A (ABC1), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83768749-4	chr8	83768252	83769252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-27441.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	15.0	9.0	16.0	18.5	48.5	21.5
Merged-chr3-37204173-4	chr3	37203658	37204658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21273.0	NR_153188	102639848.0	Mm.424479	NR_153188		Gm12532	-	predicted gene 12532	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-121016651-2	chr4	121016151	121017151	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	596.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	25.5	83.5	69.5	30.0	71.5	63.0
Merged-chr6-113343916-4	chr6	113343379	113344379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133926)	promoter-TSS (NM_133926)	43.0	NM_133926	52163.0	Mm.277373	NM_133926	ENSMUSG00000030272	Camk1	AI505105|CaMKIalpha|D6Ertd263e	calcium/calmodulin-dependent protein kinase I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9212178-3	chr18	9211683	9212683	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008058)	promoter-TSS (NM_008058)	-673.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	0.0	2.5	0.0	1.5	1.0	8.0
Merged-chr2-167925175-4	chr2	167924659	167925659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7168.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34843435-2	chr1	34842935	34843935	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160235)	promoter-TSS (NM_001160235)	-385.0	NM_001160236	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114968939-4	chr11	114968388	114969388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8471.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	126.0	285.5	221.5	108.0	219.0	149.5
Merged-chr19-5460636-4	chr19	5460121	5461121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253832)	promoter-TSS (NM_001253832)	14.0	NM_021438	58249.0	Mm.329656	NM_021438	ENSMUSG00000024911	Fibp	2010004G08Rik|2010005N21Rik|3010027N18Rik	fibroblast growth factor (acidic) intracellular binding protein	protein-coding	7.0	28.0	11.0	1.5	13.0	9.5
Merged-chr9-90258295-4	chr9	90257790	90258790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	12479.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53033222-2	chr4	53032722	53033722	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013454, exon 50 of 50)	3' UTR (NM_013454, exon 50 of 50)	21342.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-56217655-1	chr8	56217155	56218155	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-76897.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	8.0	5.5	19.5	19.0	10.0	11.0
Merged-chr8-22808012-4	chr8	22807532	22808532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2378.0	NM_001122820	64933.0	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	33.5	48.0	33.0	23.0	56.5	40.0
Merged-chr14-70774288-4	chr14	70773777	70774777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010071)	promoter-TSS (NM_010071)	-104.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	8.5	56.5	31.0	14.5	18.5	27.0
Merged-chr11-58955088-4	chr11	58954575	58955575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_134309)	promoter-TSS (NR_134309)	390.0	NM_178218	319162.0	Mm.212549	NM_178218	ENSMUSG00000078851	Hist3h2a	-	histone cluster 3, H2a	protein-coding	166.0	433.5	277.0	151.5	305.5	281.5
Merged-chr5-92348388-3	chr5	92347883	92348883	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021274, intron 1 of 3)	intron (NM_021274, intron 1 of 3)	506.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	5.5	38.5	7.0	5.0	17.5	17.0
Merged-chr17-69381566-2	chr17	69381066	69382066	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1609.0	NM_001356283	22666.0	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19003320-4	chr7	19002810	19003810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178757)	promoter-TSS (NM_178757)	-755.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83214295-4	chr17	83213791	83214791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134117)	promoter-TSS (NM_134117)	-992.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118098155-4	chr10	118097647	118098647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43640.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	81.0	250.5	160.0	120.5	285.5	159.5
Merged-chr11-106216434-4	chr11	106215931	106216931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026009)	promoter-TSS (NM_026009)	-64.0	NM_026009	67163.0	Mm.22109	NM_026009	ENSMUSG00000078622	Ccdc47	2610204L23Rik|C88307|asp4|calumin	coiled-coil domain containing 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41353485-4	chr4	41352976	41353976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355508, exon 1 of 7)	5' UTR (NM_001355508, exon 1 of 7)	1513.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	7.0	9.5	5.5	7.0	10.0	5.5
Merged-chr10-7663295-4	chr10	7662779	7663779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030698)	promoter-TSS (NR_030698)	-92.0	NR_030698	320642.0	Mm.398806	NR_030698		A630066F11Rik	-	RIKEN cDNA A630066F11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98580288-2	chr15	98579788	98580788	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001201322, intron 1 of 3)	intron (NM_001201322, intron 1 of 3)	9284.0	NM_001201322	73863.0	Mm.66894	NM_001201322	ENSMUSG00000022993	4930415O20Rik	-	RIKEN cDNA 4930415O20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53187398-4	chr4	53186905	53187905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27510.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	31.5	59.0	37.0	12.5	65.0	28.5
Merged-chr11-58199498-4	chr11	58198998	58199998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018738)	promoter-TSS (NM_018738)	-58.0	NM_018738	16145.0	Mm.33902	NM_018738	ENSMUSG00000078853	Igtp	AW558444|Irgm3	interferon gamma induced GTPase	protein-coding	66.5	106.5	78.5	38.0	67.5	77.5
Merged-chr2-125625220-4	chr2	125624723	125625723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081091)	promoter-TSS (NM_001081091)	-110.0	NM_001081091	99100.0	Mm.330545	NM_001081091	ENSMUSG00000068394	Cep152	AI851464|mKIAA0912	centrosomal protein 152	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98265218-4	chr12	98264705	98265705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-3430.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9657511-4	chr4	9657019	9658019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	11643.0	NM_023066	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	26.0	45.0	48.5	16.0	68.0	48.0
Merged-chr5-123057402-2	chr5	123056902	123057902	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR15|LTR|ERVK	-10386.0	NM_001347456	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	1.0	10.0	3.5	2.0	1.5	1.0
Merged-chr17-24165093-4	chr17	24164564	24165564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361533, intron 1 of 2)	intron (NM_001361533, intron 1 of 2)	-1331.0	NM_172935	245847.0	Mm.87319	NM_172935	ENSMUSG00000036820	Amdhd2	5730457F11Rik	amidohydrolase domain containing 2	protein-coding	246.0	550.0	418.0	175.5	432.0	348.0
Merged-chr18-38601254-5	chr18	38600778	38601778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011898)	promoter-TSS (NM_011898)	-10.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	4.5	37.0	10.0	8.5	14.0	4.0
Merged-chr13-113794410-4	chr13	113793894	113794894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172595)	promoter-TSS (NM_172595)	-114.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-109519073-4	chr7	109518559	109519559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011975)	promoter-TSS (NM_011975)	-136.0	NM_011975	26451.0	Mm.305750	NM_011975	ENSMUSG00000046364	Rpl27a	L27'|L27A|L29	ribosomal protein L27A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61642371-4	chr11	61641853	61642853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10968.0	NM_027817	71520.0	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124445358-4	chr5	124444868	124445868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310723)	promoter-TSS (NM_001310723)	-131.0	NM_001310723	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37175300-4	chr19	37174800	37175800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290827, intron 1 of 10)	intron (NM_001290827, intron 1 of 10)	763.0	NM_001290826	208922.0	Mm.391176	NM_198300	ENSMUSG00000039652	Cpeb3	4831444O18Rik|CPE-BP3|mKIAA0940	cytoplasmic polyadenylation element binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20231375-4	chr11	20230862	20231862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172260, intron 5 of 6)	intron (NM_172260, intron 5 of 6)	18062.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80839167-4	chr12	80838652	80839652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178682, intron 2 of 5)	ORR1D2|LTR|ERVL-MaLR	48620.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4073426-4	chr7	4072917	4073917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_033568)	TTS (NR_033568)	-10213.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	13.5	4.5	13.5	3.0	4.5	9.5
Merged-chr4-132494759-4	chr4	132494273	132495273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144907, intron 8 of 9)	intron (NM_144907, intron 8 of 9)	15683.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122501508-5	chr5	122501034	122502034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110140, intron 1 of 19)	CpG	691.0	NM_001110140	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51805398-4	chr11	51804895	51805895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR42|LTR|ERVK	41732.0	NM_025535	66397.0	Mm.196592	NM_025535	ENSMUSG00000020386	Sar1b	2310075M17Rik|2900019I22Rik|CMRD|Sara1b|Sara2|Sarb	secretion associated Ras related GTPase 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25469285-2	chr14	25468785	25469785	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	10100.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49298644-4	chr13	49298138	49299138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 1 of 17)	intron (NM_015759, intron 1 of 17)	10570.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70139225-4	chr8	70138719	70139719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001309645)	promoter-TSS (NM_001309645)	-22.0	NM_001025589	19727.0	Mm.161167	NM_011266	ENSMUSG00000036120	Rfxank	Tvl1	regulatory factor X-associated ankyrin-containing protein	protein-coding	39.0	111.0	88.0	34.5	101.0	114.0
Merged-chr10-66930874-4	chr10	66930378	66931378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10494.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29488240-4	chr19	29487770	29488770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33717.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5924885-4	chr19	5924363	5925363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026772)	promoter-TSS (NM_026772)	-47.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93453371-4	chr10	93452852	93453852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313897)	promoter-TSS (NM_001313897)	-44.0	NM_001313897	16993.0	Mm.271071	NM_008517	ENSMUSG00000015889	Lta4h	-	leukotriene A4 hydrolase	protein-coding	28.5	96.0	84.0	29.0	57.0	41.5
Merged-chr16-23314934-4	chr16	23314448	23315448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252506, intron 1 of 6)	intron (NM_001252506, intron 1 of 6)	24478.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-96917068-4	chr5	96916566	96917566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4206.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	82.5	216.0	76.5	58.0	172.0	68.5
Merged-chr8-126589288-2	chr8	126588788	126589788	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164598, exon 2 of 2)	3' UTR (NM_001164598, exon 2 of 2)	4148.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156008012-4	chr2	156007470	156008470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145352)	promoter-TSS (NM_001145352)	7.0	NM_001145352	320095.0	Mm.442175	NM_001145351	ENSMUSG00000074646	6430550D23Rik	-	RIKEN cDNA 6430550D23 gene	protein-coding	1.5	6.0	6.0	8.5	23.5	11.0
Merged-chr1-78490313-4	chr1	78489811	78490811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1414.0	NM_011811	23874.0	Mm.17898	NM_011811	ENSMUSG00000026245	Farsb	C76708|Farsa|Farsl|Farslb|Frsb	phenylalanyl-tRNA synthetase, beta subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97139275-2	chr11	97138775	97139775	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_198100, exon 8 of 9)	exon (NM_198100, exon 8 of 9)	7144.0	NR_106094	102466822.0		NR_106094	ENSMUSG00000099286	Mir7235	Gm27986|mmu-mir-7235	microRNA 7235	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36130469-4	chr1	36129976	36130976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13837.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165061791-4	chr2	165061287	165062287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027852, intron 1 of 7)	MER113|DNA|hAT-Charlie	6151.0	NM_011611	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	53.0	126.5	70.5	26.5	77.5	53.5
Merged-chr11-78697978-4	chr11	78697462	78698462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008702)	promoter-TSS (NM_008702)	-537.0	NM_008702	18099.0	Mm.9001	NM_008702	ENSMUSG00000017376	Nlk	AI194375	nemo like kinase	protein-coding	9.0	27.5	13.5	16.5	30.5	8.5
Merged-chr2-33176645-2	chr2	33176145	33177145	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290570, intron 7 of 16)	MIR3|SINE|MIR	-39316.0	NM_011923	26360.0	Mm.208919	NM_011923	ENSMUSG00000004105	Angptl2	AI593246|AW260363|Arp2	angiopoietin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136953160-4	chr5	136952674	136953674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163243)	promoter-TSS (NM_001163243)	-101.0	NM_001163243	66437.0	Mm.25849	NM_025562	ENSMUSG00000019054	Fis1	2010003O14Rik|Ttc11	fission, mitochondrial 1	protein-coding	13.0	15.5	25.0	5.0	14.0	9.5
Merged-chr1-106553043-4	chr1	106552547	106553547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	-6416.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44746295-4	chr16	44745790	44746790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356392)	promoter-TSS (NM_001356392)	73.0	NM_001356392	66067.0	Mm.34520	NM_025332	ENSMUSG00000022668	Gtpbp8	0610037H22Rik	GTP-binding protein 8 (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80463174-4	chr12	80462729	80463729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_133798, exon 1 of 9)	5' UTR (NM_133798, exon 1 of 9)	134.0	NM_133798	97827.0	Mm.206631	NM_133798	ENSMUSG00000032705	Exd2	4930539P14Rik|C85658|Exdl2	exonuclease 3'-5' domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40136188-4	chr10	40135682	40136682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	6072.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-87388466-4	chr12	87387971	87388971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011479)	promoter-TSS (NM_011479)	-116.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96634690-2	chr15	96634190	96635190	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166458, intron 1 of 15)	B1_Mus1|SINE|Alu	7272.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35888383-4	chr16	35887884	35888884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17002.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20888233-4	chr9	20887732	20888732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145610)	promoter-TSS (NM_145610)	57.0	NM_145610	235036.0	Mm.2930	NM_145610	ENSMUSG00000004100	Ppan	A230087P06Rik|SSF1	peter pan homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-8985083-4	chr13	8984587	8985587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027000, intron 10 of 16)	intron (NM_027000, intron 10 of 16)	10925.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105296039-2	chr8	105295539	105296539	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177788)	promoter-TSS (NM_177788)	74.0	NM_001357379	277978.0	Mm.40228	NM_177788	ENSMUSG00000043251	Exoc3l	C730015A04Rik|Exoc3l1	exocyst complex component 3-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-140137653-4	chr7	140137139	140138139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199301)	promoter-TSS (NM_199301)	75.0	NM_199301	212508.0	Mm.296088	NM_199301	ENSMUSG00000039018	Mtg1	Gm169|Gtpbp7	mitochondrial ribosome-associated GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35802938-4	chr7	35802428	35803428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177739)	promoter-TSS (NM_177739)	61.0	NM_177739	668501.0	Mm.286296	NM_177739	ENSMUSG00000044452	Zfp507	1810022O10Rik|A230056M16Rik|AL024009|AU021817|BB105092|Gm480|Znf507|mKIAA1084	zinc finger protein 507	protein-coding	0.5	0.0	0.0	1.5	0.0	0.0
Merged-chr10-21994618-4	chr10	21994098	21995098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011361)	promoter-TSS (NM_011361)	-68.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	56.0	139.0	97.0	56.5	161.0	75.5
Merged-chr4-43964704-4	chr4	43964213	43965213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027450, intron 1 of 4)	intron (NM_027450, intron 1 of 4)	7011.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37779530-4	chr13	37779051	37780051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46487.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-117486661-4	chr7	117486171	117487171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175645, intron 2 of 11)	intron (NM_175645, intron 2 of 11)	105692.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-113643660-4	chr8	113643168	113644168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173015, exon 5 of 5)	3' UTR (NM_173015, exon 5 of 5)	455.0	NM_001048145	668110.0	Mm.390078	NM_029139	ENSMUSG00000033409	Syce1l	4930481F22Rik|MMRP|PSESS|mmrp2	synaptonemal complex central element protein 1 like	protein-coding	5.0	4.0	4.0	5.5	11.5	11.5
Merged-chr10-13193001-7	chr10	13192487	13193487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181470, intron 1 of 10)	CpG	150.0	NM_181470	353258.0	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 ribosome biogenesis factor	protein-coding	18.0	60.5	24.0	15.0	61.0	29.5
Merged-chr5-30888058-4	chr5	30887567	30888567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_122117)	promoter-TSS (NR_122117)	-785.0	NM_174849	231093.0	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84752235-4	chr12	84751754	84752754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20858.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60728409-4	chr11	60727913	60728913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_039559)	promoter-TSS (NR_039559)	15.0	NM_001009927	237781.0	Mm.339760	NM_001009927	ENSMUSG00000018599	Mief2	AI482195|Gm11|Smcr7	mitochondrial elongation factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-110968258-4	chr13	110967759	110968759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64413.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132598295-4	chr2	132597803	132598803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033469, exon 1 of 4)	non-coding (NR_033469, exon 1 of 4)	107.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-67888184-4	chr14	67887683	67888683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177780, intron 1 of 51)	MIR3|SINE|MIR	-28438.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	49.0	113.5	72.5	37.0	85.0	35.5
Merged-chr19-41482728-4	chr19	41482237	41483237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42515.0	NM_001326287	627352.0	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	35.0	67.0	78.5	26.0	93.5	74.5
Merged-chr8-86623998-4	chr8	86623479	86624479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025827)	promoter-TSS (NM_025827)	-64.0	NM_025827	66887.0	Mm.324550	NM_025827	ENSMUSG00000047866	Lonp2	1300002A08Rik|AU015403|Lonp	lon peptidase 2, peroxisomal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108201320-4	chr9	108200816	108201816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10933.0	NM_007567	12217.0	Mm.20425	NM_007567	ENSMUSG00000032589	Bsn	-	bassoon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41314353-4	chr4	41313894	41314894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026893, intron 1 of 8)	CpG	507.0	NM_026893	68970.0	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	2.0	37.5	10.5	9.5	18.0	18.5
Merged-chr4-129625299-5	chr4	129624857	129625857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001199695)	TTS (NM_001199695)	-1449.0	NM_025455	66264.0	Mm.383215	NM_025455	ENSMUSG00000028795	Ccdc28b	1110002E08Rik|1810010N17Rik	coiled coil domain containing 28B	protein-coding	135.0	291.5	213.0	56.5	114.5	104.0
Merged-chr12-108651239-5	chr12	108650815	108651815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 3 of 14)	intron (NM_001163396, intron 3 of 14)	-7305.0	NR_029771	723909.0		NR_029771	ENSMUSG00000065436	Mir342	Mirn342|mmu-mir-342	microRNA 342	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-38623639-2	chr10	38623139	38624139	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	198140.0	NM_001177783	215919.0	Mm.294313	NM_001177783	ENSMUSG00000094311	Rfpl4b	100040915|Gm3037|Gm62	ret finger protein-like 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-121230073-4	chr6	121229571	121230571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD|LINE|L1	-15835.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-20304956-4	chr3	20304456	20305456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29223.0	NM_029706	76703.0	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-57746716-4	chr14	57746219	57747219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015771)	promoter-TSS (NM_015771)	-596.0	NM_015771	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71286549-2	chr17	71286049	71287049	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	L1MC1|LINE|L1	24462.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	31.0	65.0	44.0	51.0	103.5	83.0
Merged-chr8-72570968-5	chr8	72570501	72571501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172396)	promoter-TSS (NM_172396)	47.0	NM_172396	66818.0	Mm.22565	NM_172396	ENSMUSG00000044600	Smim7	9130011J15Rik	small integral membrane protein 7	protein-coding	55.5	76.0	75.0	37.5	94.0	66.0
Merged-chr12-17347709-1	chr12	17347209	17348209	+	1000.0	f1_balb.idr	promoter-TSS (NM_001008421)	promoter-TSS (NM_001008421)	-784.0	NM_001008421	217431.0	Mm.27536	NM_001008421	ENSMUSG00000061458	Nol10	Gm67	nucleolar protein 10	protein-coding	99.0	139.0	178.5	43.0	101.5	113.5
Merged-chr7-135699450-4	chr7	135698962	135699962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081117, exon 12 of 14)	exon (NM_001081117, exon 12 of 14)	16917.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105471490-4	chr8	105471018	105472018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026481)	promoter-TSS (NM_026481)	-96.0	NM_026481	67971.0	Mm.29358	NM_026481	ENSMUSG00000014846	Tppp3	2700055K07Rik|CGI-38|Ceacam9|mmCGM8	tubulin polymerization-promoting protein family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47447036-4	chr19	47446546	47447546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	17365.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	39.5	74.0	47.5	37.5	117.5	70.5
Merged-chr5-135957721-4	chr5	135957203	135958203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16773.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	99.0	195.5	135.5	96.0	250.5	184.5
Merged-chr11-106278431-2	chr11	106277931	106278931	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029467, intron 1 of 7)	ID_B1|SINE|B4	1759.0	NM_029467	75870.0	Mm.159608	NM_029467	ENSMUSG00000020712	Tcam1	4930570F09Rik|AI429105	testicular cell adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160214290-3	chr2	160213783	160214783	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	113211.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50567626-4	chr9	50567120	50568120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008360, intron 3 of 7)	intron (NM_008360, intron 3 of 7)	-6352.0	NM_025687	66654.0	Mm.442255	NM_025687	ENSMUSG00000032065	Tex12	5730518K06Rik	testis expressed gene 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80371411-4	chr7	80370930	80371930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172903)	promoter-TSS (NM_172903)	-55.0	NM_172903	140481.0	Mm.269245	NM_172903	ENSMUSG00000038886	Man2a2	1700052O22Rik|4931438M07Rik|AI480988|MX|Man IIx	mannosidase 2, alpha 2	protein-coding	5.0	10.5	2.5	4.0	2.5	7.0
Merged-chr7-25278993-4	chr7	25278511	25279511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302811, intron 2 of 20)	CpG	-3168.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-18840683-4	chr7	18840205	18841205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153760, intron 1 of 4)	intron (NM_153760, intron 1 of 4)	739.0	NM_153760	243864.0	Mm.233503	NM_153760	ENSMUSG00000040987	Mill2	Micb	MHC I like leukocyte 2	protein-coding	10.0	36.5	37.0	9.5	34.5	30.5
Merged-chr12-80833733-4	chr12	80833199	80834199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178682, intron 2 of 5)	intron (NM_178682, intron 2 of 5)	43167.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35766546-4	chr17	35765986	35766986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5964.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	0.0	1.5	0.0	0.0	1.0	2.0
Merged-chr4-47303540-4	chr4	47303039	47304039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 33 of 39)	intron (NM_009928, intron 33 of 39)	-49683.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43785890-2	chr13	43785390	43786390	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	778.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40558822-4	chr12	40558323	40559323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	112770.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106148099-4	chr8	106147621	106148621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2233.0	NM_133792	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10023836-4	chr19	10023328	10024328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153790, intron 1 of 10)	intron (NR_153790, intron 1 of 10)	5634.0	NM_001347430	74760.0	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	20.5	31.0	32.5	21.0	20.0	27.5
Merged-chr13-110568669-4	chr13	110568172	110569172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	173628.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26697480-1	chr8	26696980	26697980	+	1000.0	f0_c57.idr	Intergenic	Intergenic	126943.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	78.5	121.0	105.0	37.0	88.5	70.5
Merged-chr11-116026536-2	chr11	116026036	116027036	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2032.0	NM_008211	15081.0	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	29.0	50.5	30.0	29.0	62.5	28.5
Merged-chr17-24632645-4	chr17	24632159	24633159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286720)	promoter-TSS (NM_001286720)	-23.0	NM_001357615	18207.0	Mm.148315	NM_008743	ENSMUSG00000041429	Nthl1	Nth1|Octs3	nth (endonuclease III)-like 1 (E.coli)	protein-coding	11.0	22.0	34.0	10.0	32.5	32.5
Merged-chr15-53415994-4	chr15	53415493	53416493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69810.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64153379-4	chr13	64152874	64153874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175494)	promoter-TSS (NM_175494)	-175.0	NM_175494	238673.0	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	43.0	121.5	85.0	32.5	78.0	62.0
Merged-chr7-106529232-4	chr7	106528732	106529732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88159.0	NR_003967	209380.0	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	18.5	29.0	40.0	15.5	108.5	15.5
Merged-chr12-32008891-1	chr12	32008391	32009391	+	1000.0	f0_c57.idr	intron (NM_011158, intron 2 of 10)	B1_Mur2|SINE|Alu	52388.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	11.5	34.0	37.5	0.0	0.0	3.5
Merged-chr5-140648687-4	chr5	140648171	140649171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308040, intron 1 of 12)	CpG	360.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-17835946-4	chr5	17835428	17836428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159555)	promoter-TSS (NM_001159555)	-32.0	NM_007643	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28811417-4	chr7	28810921	28811921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177301, intron 1 of 12)	CpG	531.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51397971-4	chr13	51397442	51398442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10676.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100423106-4	chr15	100422609	100423609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356952)	promoter-TSS (NM_001356952)	-54.0	NM_008732	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	1.0	8.0	14.0	3.5	0.0	2.0
Merged-chr6-43848668-4	chr6	43848190	43849190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-182412.0	NM_001311111	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-129536383-4	chr3	129535880	129536880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130450, intron 2 of 4)	intron (NM_130450, intron 2 of 4)	-3992.0	NR_153368	102639747.0	Mm.393257	NR_153368		Gm35986	-	predicted gene, 35986	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69654452-4	chr8	69653943	69654943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177527)	promoter-TSS (NM_001177527)	-113.0	NM_001177527	636741.0	Mm.480188	NM_001177527	ENSMUSG00000091764	Zfp964	4732490P12|EG636741|Gm7187	zinc finger protein 964	protein-coding	20.0	48.0	36.5	25.0	52.5	59.0
Merged-chr7-55969613-4	chr7	55969127	55970127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015495, intron 1 of 5)	ORR1E-int|LTR|ERVL-MaLR	7096.0	NR_015495	320845.0	Mm.274484	NM_001033396		A230056P14Rik	-	RIKEN cDNA A230056P14 gene	ncRNA	45.5	122.5	104.5	50.0	140.5	70.5
Merged-chr1-79762975-4	chr1	79762463	79763463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-1194.0	NM_027057	69368.0	Mm.293273	NM_027057	ENSMUSG00000073643	Wdfy1	1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435	WD repeat and FYVE domain containing 1	protein-coding	92.0	326.5	195.0	25.5	58.0	55.0
Merged-chr2-150362763-4	chr2	150362277	150363277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027017)	promoter-TSS (NM_027017)	-12.0	NM_027017	69277.0	Mm.272470	NM_027017	ENSMUSG00000063364	3300002I08Rik	2900016H11Rik	RIKEN cDNA 3300002I08 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84615306-4	chr12	84614785	84615785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008992, intron 2 of 18)	intron (NM_008992, intron 2 of 18)	2181.0	NM_008992	19300.0	Mm.229109	NM_008992	ENSMUSG00000021240	Abcd4	P69r|P70R|Pxmp1l	ATP-binding cassette, sub-family D (ALD), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123149834-4	chr5	123149322	123150322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040398, intron 6 of 16)	intron (NM_001040398, intron 6 of 16)	7629.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124647887-4	chr2	124647371	124648371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	-5710.0	NM_199240	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3279572-4	chr8	3279065	3280065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010568)	promoter-TSS (NM_010568)	52.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115612939-4	chr11	115612435	115613435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243586)	promoter-TSS (NM_001243586)	34.0	NM_001243584	69674.0	Mm.390387	NM_027162	ENSMUSG00000020743	Mif4gd	1110014L05Rik|2310075G12Rik	MIF4G domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98589608-2	chr11	98589108	98590108	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-2363.0	NM_025661	66612.0	Mm.180546	NM_025661	ENSMUSG00000038150	Ormdl3	2810011N17Rik|AI315223	ORM1-like 3 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114079493-4	chr7	114078962	114079962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	38319.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	19.5	65.5	52.5	24.5	67.5	31.5
Merged-chr6-113624048-4	chr6	113623547	113624547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009507)	promoter-TSS (NM_009507)	26.0	NM_009507	22346.0	Mm.29407	NM_009507	ENSMUSG00000033933	Vhl	Vhlh	von Hippel-Lindau tumor suppressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-101595811-4	chr14	101595302	101596302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	13389.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-82793297-4	chr1	82792788	82793788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24832.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121950362-8	chr8	121949802	121950802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110100)	promoter-TSS (NM_001110100)	-190.0	NM_016812	53325.0	Mm.287163	NM_016812	ENSMUSG00000025316	Banp	AA408158|SMAR1	BTG3 associated nuclear protein	protein-coding	9.5	14.5	9.0	0.0	3.5	4.5
Merged-chr1-152525120-4	chr1	152524620	152525620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 15 of 17)	intron (NM_016846, intron 15 of 17)	100097.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27577817-4	chr7	27577304	27578304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175107, intron 8 of 9)	MTC|LTR|ERVL-MaLR	-13748.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	35.0	118.0	63.0	38.0	123.0	62.0
Merged-chr6-72409727-2	chr6	72409227	72410227	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4581.0	NM_019802	56316.0	Mm.19937	NM_019802	ENSMUSG00000053460	Ggcx	-	gamma-glutamyl carboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41713463-4	chr4	41712949	41713949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027278)	promoter-TSS (NM_027278)	68.0	NM_027278	69961.0	Mm.425182	NM_027278	ENSMUSG00000036114	Rpp25l	2810432D09Rik|AW987258|Rppl25	ribonuclease P/MRP 25 subunit-like	protein-coding	2.0	1.0	9.0	0.0	4.5	7.0
Merged-chr7-19094642-4	chr7	19094162	19095162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001190491)	TTS (NM_001190491)	118.0	NM_011383	20475.0	Mm.3410	NM_011383	ENSMUSG00000040841	Six5	Dmahp|MDMAHP|TrexBF	sine oculis-related homeobox 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84425310-4	chr2	84424790	84425790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018782)	promoter-TSS (NM_018782)	-24.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	23.0	51.0	41.0	7.5	34.5	53.5
Merged-chr8-46739583-4	chr8	46739154	46740154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008391)	promoter-TSS (NM_008391)	-91.0	NM_008391	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-35631400-4	chr5	35630902	35631902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42639.0	NR_045807	74364.0	Mm.473123	NM_175208	ENSMUSG00000055061	4931431C16Rik	-	RIKEN cDNA 4931431C16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165194485-4	chr1	165193964	165194964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145512)	promoter-TSS (NM_145512)	-26.0	NR_151712	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25281278-2	chr7	25280778	25281778	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027882)	promoter-TSS (NM_027882)	-901.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-171723367-2	chr2	171722867	171723867	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	239432.0	NR_040509	75655.0	Mm.396203	NR_040509	ENSMUSG00000086823	1700028P15Rik	-	RIKEN cDNA 1700028P15 gene	ncRNA	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr14-66219040-4	chr14	66218572	66219572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-5248.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	11.5	25.5	19.0	22.0	28.5	16.5
Merged-chr8-83693941-4	chr8	83693448	83694448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177262, intron 1 of 21)	intron (NM_177262, intron 1 of 21)	113.0	NM_001199593	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	19.0	12.0	12.0	5.5	25.5	28.0
Merged-chr6-120039817-4	chr6	120039314	120040314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1159.0	NM_001185021	232341.0	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64884410-4	chr5	64883905	64884905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48294.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58458996-4	chr13	58458504	58459504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55661.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94386386-4	chr8	94385892	94386892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022331)	promoter-TSS (NM_022331)	-37.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110164957-4	chr7	110164458	110165458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42899.0	NM_009516	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-18013443-4	chr5	18012943	18013943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 5 of 7)	intron (NM_001081143, intron 5 of 7)	50873.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29953975-4	chr7	29953411	29954411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178384, exon 1 of 6)	5' UTR (NM_178384, exon 1 of 6)	154.0	NM_178384	72723.0	Mm.371648	NM_178384	ENSMUSG00000059975	Zfp74	2810054M15Rik|KRAB8|Zfp66|Znf569|mszf21|mszf77|zfp-74	zinc finger protein 74	protein-coding	64.5	151.0	110.5	91.0	189.5	123.0
Merged-chr15-11968344-2	chr15	11967844	11968844	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040447, intron 2 of 2)	MTC|LTR|ERVL-MaLR	1282.0	NR_040447	73339.0	Mm.231975	NR_040447	ENSMUSG00000099349	1700047G03Rik	-	RIKEN cDNA 1700047G03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-52046952-4	chr11	52046462	52047462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166654, intron 13 of 13)	intron (NM_001166654, intron 13 of 13)	42741.0	NM_001166653	213084.0	Mm.280557	NM_153785	ENSMUSG00000020389	Cdkl3	AI852479|B230379H01Rik	cyclin-dependent kinase-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76195500-4	chr14	76194978	76195978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55984.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-3406828-4	chr13	3406339	3407339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71464.0	NR_015522	76937.0	Mm.487240	NR_015522	ENSMUSG00000097709	2810429I04Rik	AI256682	RIKEN cDNA 2810429I04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-106750513-4	chr6	106750013	106751013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1476.0	NM_008370	16192.0	Mm.3448	NM_008370	ENSMUSG00000005364	Il5ra	CD125|CDw125|Il5r	interleukin 5 receptor, alpha	protein-coding	8.5	2.0	2.0	1.5	6.5	6.0
Merged-chr19-5273134-4	chr19	5272656	5273656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153129)	promoter-TSS (NM_153129)	-37.0	NM_153129	107975.0	Mm.234923	NM_153129	ENSMUSG00000024855	Pacs1	AI325977	phosphofurin acidic cluster sorting protein 1	protein-coding	29.0	135.0	102.5	59.0	157.5	101.0
Merged-chr9-58552252-4	chr9	58551742	58552742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11302.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-36469069-4	chr3	36468556	36469556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009673, intron 2 of 12)	intron (NM_009673, intron 2 of 12)	6468.0	NR_105976	102466786.0		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-119063223-3	chr10	119062737	119063737	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12738.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64754219-4	chr17	64753717	64754717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008549, exon 22 of 22)	3' UTR (NM_008549, exon 22 of 22)	-12894.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-85359368-4	chr13	85358862	85359862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69876.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	7.5	6.5	18.0	23.5	6.5	15.5
Merged-chr11-75679941-4	chr11	75679436	75680436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277221, intron 1 of 1)	intron (NM_001277221, intron 1 of 1)	677.0	NM_001277221	12928.0	Mm.280125	NM_133656	ENSMUSG00000017776	Crk	Crk-I|Crk-II|Crk-III|Crk3|CrkIII|Crko|c-Crk|p38	v-crk avian sarcoma virus CT10 oncogene homolog	protein-coding	10.5	6.0	5.0	10.5	7.5	5.0
Merged-chr3-104865071-4	chr3	104864578	104865578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355044)	promoter-TSS (NM_001355044)	572.0	NM_001253702	229681.0	Mm.206379	NM_153091	ENSMUSG00000045576	St7l	St7r	suppression of tumorigenicity 7-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86614315-4	chr11	86613843	86614843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 7 of 11)	intron (NM_001356531, intron 7 of 11)	-30185.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34875499-4	chr13	34874976	34875976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013830)	promoter-TSS (NM_013830)	-18.0	NM_013830	19134.0	Mm.10027	NM_013830	ENSMUSG00000021413	Prpf4b	2610037H07|Prp4|Prp4k|Prpk|cbp143	pre-mRNA processing factor 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95645455-4	chr3	95644959	95645959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13262.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	8.0	51.5	13.0	22.0	35.0	4.5
Merged-chr10-78392333-4	chr10	78391833	78392833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16212.0	NR_105872	102465547.0		NR_105872	ENSMUSG00000098376	Mir6907	Gm27351|mmu-mir-6907	microRNA 6907	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150509273-4	chr4	150508779	150509779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 9 of 22)	intron (NM_001085492, intron 9 of 22)	142895.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	2.5	8.0	5.0	9.5	6.0	10.5
Merged-chr5-135184664-4	chr5	135184163	135185163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-2660.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123041681-4	chr8	123041178	123042178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045268)	promoter-TSS (NR_045268)	606.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128438694-4	chr6	128438202	128439202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028592)	promoter-TSS (NR_028592)	-46.0	NM_010219	14228.0	Mm.12758	NM_010219	ENSMUSG00000030357	Fkbp4	AL022792|AW208983|FKBP-4|FKBP-52|FKBP52|FKPB52|p59	FK506 binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-109106998-2	chr9	109106498	109107498	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172775, intron 16 of 37)	intron (NM_172775, intron 16 of 37)	11562.0	NM_172775	235611.0	Mm.53862	NM_172775	ENSMUSG00000053646	Plxnb1	2900002G15Rik|AU042020|mKIAA0407	plexin B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127935528-4	chr7	127935012	127936012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001319147, exon 10 of 15)	exon (NM_001319147, exon 10 of 15)	-5399.0	NM_133351	76560.0	Mm.5875	NM_133351	ENSMUSG00000030800	Prss8	2410039E18Rik|AI313909|C79772|CAP1|fr|mCAP1	protease, serine 8 (prostasin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60172799-4	chr2	60172298	60173298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37138.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155187313-4	chr4	155186813	155187813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	35222.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	19.0	36.5	33.0	15.5	40.5	21.0
Merged-chr7-19085296-2	chr7	19084796	19085796	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_032418, intron 1 of 14)	intron (NM_032418, intron 1 of 14)	1447.0	NM_001190491	13400.0	Mm.6529	NM_032418	ENSMUSG00000030409	Dmpk	DM|DMK|Dm15|MDPK|MT-PK	dystrophia myotonica-protein kinase	protein-coding	4.0	6.5	6.0	0.0	13.5	2.0
Merged-chr2-22864864-4	chr2	22864363	22865363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 10 of 13)	intron (NM_019456, intron 10 of 13)	-30659.0	NM_019501	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46179425-4	chr18	46178923	46179923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178872, intron 4 of 9)	intron (NM_178872, intron 4 of 9)	19395.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	7.0	39.0	22.0	11.5	21.5	11.5
Merged-chr5-139736413-4	chr5	139735914	139736914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174850)	promoter-TSS (NM_174850)	-81.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	50.0	44.5	50.5	28.0	76.0	27.5
Merged-chr3-106545052-2	chr3	106544552	106545552	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293694, intron 1 of 8)	intron (NM_001293694, intron 1 of 8)	-1906.0	NM_001357819	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	8.0	24.0	13.5	8.0	25.0	14.0
Merged-chr17-35998862-2	chr17	35998362	35999362	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_015618, intron 1 of 1)	IMPB_01|Satellite|Satellite	4358.0	NR_015618	77810.0	Mm.483143	NR_015618		A930015D03Rik	-	RIKEN cDNA A930015D03 gene	ncRNA	4.5	35.5	3.5	3.5	37.0	7.0
Merged-chr6-73248497-4	chr6	73248015	73249015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019879)	promoter-TSS (NM_019879)	10.0	NM_019879	56451.0	Mm.29845	NM_019879	ENSMUSG00000052738	Suclg1	1500000I01Rik|Sucla1	succinate-CoA ligase, GDP-forming, alpha subunit	protein-coding	98.5	205.0	167.0	101.0	201.0	130.5
Merged-chr10-82953633-4	chr10	82953113	82954113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR35B_MM|LTR|ERVL	-31884.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	8.0	3.0	10.0	25.0	50.0	11.0
Merged-chr9-118669936-4	chr9	118669430	118670430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 9 of 27)	MER2|DNA|TcMar-Tigger	-41762.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	31.5	101.0	68.5	31.0	115.5	85.0
Merged-chr12-12231800-4	chr12	12231294	12232294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30345.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	69.5	158.0	114.0	40.0	182.0	120.0
Merged-chr8-85036838-4	chr8	85036358	85037358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122843)	promoter-TSS (NM_001122843)	-57.0	NM_145390	212999.0	Mm.220357	NM_145390	ENSMUSG00000031691	Tnpo2	1110034O24Rik|AA414969|AI464345|AI852433|IPO3|Knpb2b|Kpnb2b|TRN2	transportin 2 (importin 3, karyopherin beta 2b)	protein-coding	19.0	27.0	33.0	18.5	43.5	22.0
Merged-chr5-139196140-2	chr5	139195640	139196640	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-4497.0	NM_001256115	77053.0	Mm.210845	NM_024451	ENSMUSG00000036817	Sun1	4632417G13Rik|5730434D03Rik|Unc84a|mKIAA0810	Sad1 and UNC84 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-67515629-4	chr3	67515122	67516122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164763)	promoter-TSS (NM_001164763)	-99.0	NM_001164763	109222.0	Mm.38002	NM_001164763	ENSMUSG00000049404	Rarres1	5430417P09Rik|AI662122	retinoic acid receptor responder (tazarotene induced) 1	protein-coding	2.0	20.0	10.0	2.5	2.5	9.0
Merged-chr7-143046486-4	chr7	143045975	143046975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110355, intron 1 of 4)	intron (NR_110355, intron 1 of 4)	-6275.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	40.0	89.0	87.0	24.0	58.0	61.5
Merged-chr17-34347765-4	chr17	34347229	34348229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3084.0	NM_010381	100504404.0	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	54.0	251.0	131.5	99.5	229.0	132.5
Merged-chr11-100414577-4	chr11	100414085	100415085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_176830, exon 1 of 8)	exon (NM_176830, exon 1 of 8)	234.0	NM_176830	66180.0	Mm.4940	NM_176830	ENSMUSG00000006931	P3h4	1110036O03Rik|AI413214|Leprel4|Sc65	prolyl 3-hydroxylase family member 4 (non-enzymatic)	protein-coding	5.0	3.0	0.0	0.0	0.0	7.0
Merged-chr4-49632015-4	chr4	49631522	49632522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163263)	promoter-TSS (NM_001163263)	-38.0	NM_001163263	109331.0	Mm.24765	NM_182999	ENSMUSG00000028309	Rnf20	4833430L21Rik|AW540162|C79397|mKIAA4116	ring finger protein 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91716420-4	chr6	91715923	91716923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	32356.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11573872-4	chr11	11573375	11574375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53963.0	NM_001305143	102631730.0	Mm.159430	NM_001305143	ENSMUSG00000062511	4930512M02Rik	-	RIKEN cDNA 4930512M02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-59854992-4	chr5	59854499	59855499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131003.0	NR_040683	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-19300481-4	chr2	19299977	19300977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001271564, exon 17 of 19)	exon (NM_001271564, exon 17 of 19)	-43840.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-93405737-4	chr15	93405157	93406157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358749, intron 2 of 8)	intron (NM_001358749, intron 2 of 8)	7193.0	NM_001285863	223828.0	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134962557-4	chr1	134962042	134963042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001278115)	promoter-TSS (NM_001278115)	-23.0	NM_026024	67196.0	Mm.284587	NM_026024	ENSMUSG00000026429	Ube2t	2700084L22Rik|C80607	ubiquitin-conjugating enzyme E2T	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-63181211-4	chr1	63180711	63181711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_018796)	TTS (NM_018796)	2188.0	NR_028558	100217464.0	Mm.484706	NR_028558	ENSMUSG00000064602	Snora41	MBI-83	small nucleolar RNA, H/ACA box 41	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89430299-4	chr3	89429806	89430806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293763)	promoter-TSS (NM_001293763)	92.0	NM_001293763	68911.0	Mm.22521	NM_026869	ENSMUSG00000047824	Pygo2	1190004M21Rik	pygopus 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124862591-4	chr5	124862120	124863120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144819)	promoter-TSS (NM_144819)	-85.0	NM_001081750	269704.0	Mm.138617	NM_001081750	ENSMUSG00000079215	Zfp664	AW060232|D930038J03Rik|ZFOC1|Znf664	zinc finger protein 664	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr11-106999611-4	chr11	106999109	107000109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010655)	promoter-TSS (NM_010655)	-84.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	65.5	96.0	60.5	27.5	54.0	31.0
Merged-chr13-113608609-2	chr13	113608109	113609109	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	9955.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117720057-4	chr10	117719565	117720565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9307.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-64916050-4	chr14	64915541	64916541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 1 of 9)	intron (NM_177338, intron 1 of 9)	33816.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	18.0	42.0	26.0	12.0	35.5	21.5
Merged-chr15-66833536-4	chr15	66833015	66834015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 43 of 47)	intron (NM_009375, intron 43 of 47)	-1686.0	NM_009192	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-166379136-4	chr1	166378648	166379648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030245)	promoter-TSS (NM_030245)	-19.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76406854-4	chr11	76406380	76407380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291161)	promoter-TSS (NM_001291161)	-45.0	NM_001291161	56322.0	Mm.18803	NM_019818	ENSMUSG00000020843	Timm22	Tim22	translocase of inner mitochondrial membrane 22	protein-coding	16.0	47.5	23.5	28.0	36.0	23.0
Merged-chr10-80901014-4	chr10	80900539	80901539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013895)	promoter-TSS (NM_013895)	-70.0	NM_013895	30055.0	Mm.142132	NM_013895	ENSMUSG00000020219	Timm13	D10Ertd378e|Tim9|Timm9	translocase of inner mitochondrial membrane 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56765718-2	chr17	56765218	56766218	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_144858, exon 2 of 13)	exon (NM_144858, exon 2 of 13)	967.0	NM_144858	224907.0	Mm.293973	NM_144858	ENSMUSG00000007603	Dus3l	AI662135|AW557805	dihydrouridine synthase 3-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-48818518-4	chr11	48818017	48819017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1126.0	NM_145377	211007.0	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91880693-4	chr16	91880197	91881197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	50933.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45318712-4	chr14	45318201	45319201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015774)	promoter-TSS (NM_015774)	-129.0	NM_015774	50527.0	Mm.387108	NM_015774	ENSMUSG00000021831	Ero1l	ERO1-L|Ero1a	ERO1-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132567571-4	chr4	132567082	132568082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081211, intron 1 of 1)	intron (NM_001081211, intron 1 of 1)	3515.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-34311248-4	chr14	34310741	34311741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029389)	promoter-TSS (NM_029389)	514.0	NM_008133	14661.0	Mm.10600	NM_008133	ENSMUSG00000021794	Glud1	AI118167|Gdh-X|Glud|Gludl	glutamate dehydrogenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127791002-4	chr3	127790519	127791519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356430, intron 1 of 2)	intron (NM_001356430, intron 1 of 2)	362.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	185.0	716.0	430.5	138.5	364.5	210.5
Merged-chr2-170147850-4	chr2	170147287	170148287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5112.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	10.0	5.5	3.0	7.5	17.0	4.5
Merged-chr4-43025602-4	chr4	43025110	43026110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_020035, exon 1 of 10)	5' UTR (NM_020035, exon 1 of 10)	164.0	NM_020035	56703.0	Mm.143738	NM_020035	ENSMUSG00000028454	Pigo	PIG-O	phosphatidylinositol glycan anchor biosynthesis, class O	protein-coding	9.5	5.5	12.5	8.5	16.5	17.0
Merged-chr7-139295837-4	chr7	139295337	139296337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47355.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	16.5	16.0	20.0	20.5	11.5	20.5
Merged-chr17-28247819-4	chr17	28247323	28248323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 2 of 7)	intron (NM_011145, intron 2 of 7)	15069.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46886366-4	chr8	46885861	46886861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100526.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120842808-4	chr7	120842306	120843306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007908)	promoter-TSS (NM_007908)	-25.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45769038-2	chr17	45768538	45769538	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	C-rich|Low_complexity|Low_complexity	34532.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	0.0	1.0	0.0	0.0	1.0	0.0
Merged-chr2-129371148-4	chr2	129370635	129371635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008361)	promoter-TSS (NM_008361)	4.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	11.5	52.0	18.5	12.0	32.0	14.0
Merged-chr2-160237038-4	chr2	160236538	160237538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90456.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23726397-4	chr17	23725912	23726912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023058)	promoter-TSS (NM_023058)	76.0	NM_023058	268930.0	Mm.182193	NM_023058	ENSMUSG00000023908	Pkmyt1	6230424P17|AW209059|Myt1	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	17.5	56.0	42.0	9.5	23.0	16.5
Merged-chr1-139422263-4	chr1	139421770	139422770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172643)	promoter-TSS (NM_172643)	-113.0	NM_172643	226470.0	Mm.119711	NM_172643	ENSMUSG00000033964	Zbtb41	8430415N23Rik|9430031N01|9830132G07Rik|AI316857	zinc finger and BTB domain containing 41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102033477-4	chr5	102032993	102033993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	36428.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	13.0	8.5	15.0	16.5	5.0
Merged-chr11-98202870-5	chr11	98202462	98203462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001109626)	promoter-TSS (NM_001109626)	-343.0	NM_001109628	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86487548-4	chr1	86487017	86488017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-39040.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-38039252-4	chr5	38038746	38039746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289535)	promoter-TSS (NM_001289535)	16.0	NM_026959	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-92326008-2	chr13	92325508	92326508	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311120, intron 8 of 23)	intron (NM_001311120, intron 8 of 23)	-28775.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	3.5	0.0	3.0	3.5	0.0	3.5
Merged-chr2-36136751-4	chr2	36136263	36137263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026434)	promoter-TSS (NM_026434)	-59.0	NR_027515	67889.0	Mm.205937	NM_026434	ENSMUSG00000026889	Rbm18	2010004P11Rik|AU015530	RNA binding motif protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108990647-4	chr12	108990182	108991182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 3 of 6)	intron (NM_177602, intron 3 of 6)	77535.0	NM_001163175	380785.0	Mm.342085	NM_001163175	ENSMUSG00000040867	Begain	BM948371|Gm897	brain-enriched guanylate kinase-associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-66896377-4	chr6	66895888	66896888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177557)	promoter-TSS (NM_001177557)	-9.0	NM_001177559	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-19630703-4	chr2	19630212	19631212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27185.0	NR_033642	100041244.0	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100846395-4	chr5	100845902	100846902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172715, intron 1 of 12)	CpG	173.0	NM_172715	231510.0	Mm.271911	NM_172715	ENSMUSG00000029314	Gpat3	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|Agpat9|GPAT-3|mGPAT3	glycerol-3-phosphate acyltransferase 3	protein-coding	3.0	22.0	21.5	26.5	36.0	18.0
Merged-chr13-12258192-4	chr13	12257694	12258694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081128)	promoter-TSS (NM_001081128)	-81.0	NM_001081128	238505.0	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-24989399-4	chr6	24988882	24989882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33257.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	0.0	14.5	3.5	3.0	0.0	2.0
Merged-chr14-47418267-4	chr14	47417741	47418741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_144553, exon 1 of 19)	5' UTR (NM_144553, exon 1 of 19)	166.0	NM_144553	218977.0	Mm.240543	NM_144553	ENSMUSG00000037544	Dlgap5	C77459|C86398|Dap-5|Dlg7|Hurp|mKIAA0008	DLG associated protein 5	protein-coding	17.5	57.0	32.0	31.0	75.0	58.5
Merged-chr15-3218050-2	chr15	3217550	3218550	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52717.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68433172-2	chr11	68432672	68433672	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	1047.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122655319-2	chr6	122654819	122655819	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR22_Mur|LTR|ERVK	28895.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20976465-2	chr9	20975965	20976965	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010333, intron 1 of 1)	CpG	328.0	NM_010333	14739.0	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-96912323-5	chr5	96911770	96912770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-9002.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	91.5	238.5	189.5	110.0	214.0	194.0
Merged-chr2-38486116-4	chr2	38485613	38486613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25584.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25251975-3	chr9	25251484	25252484	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001205367)	promoter-TSS (NM_001205367)	-7.0	NM_001359736	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23739764-4	chr13	23739254	23740254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_015786)	TTS (NM_015786)	947.0	NM_015786	50708.0	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	176.0	435.5	303.0	202.0	593.5	281.0
Merged-chr13-113379082-4	chr13	113378597	113379597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	123747.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120940323-2	chr1	120939823	120940823	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147082.0	NR_038008	98452.0	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35375605-4	chr8	35375139	35376139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177741)	promoter-TSS (NM_177741)	-102.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	42.5	127.0	52.0	72.5	186.0	161.0
Merged-chr8-117257368-5	chr8	117256900	117257900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163262, exon 1 of 21)	exon (NM_001163262, exon 1 of 21)	381.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-3004902-2	chr18	3004402	3005402	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	118510.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124350404-1	chr8	124349904	124350904	+	1000.0	f1_balb.idr	Intergenic	Intergenic	83532.0	NM_171824	209966.0	Mm.234233	NM_171824	ENSMUSG00000050751	Pgbd5	2900019M05Rik|AI854313	piggyBac transposable element derived 5	protein-coding	14.0	0.0	0.0	0.5	1.5	5.5
Merged-chr6-128381434-4	chr6	128380944	128381944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027697, intron 2 of 2)	intron (NM_027697, intron 2 of 2)	5934.0	NM_027697	71149.0	Mm.483176	NM_027697	ENSMUSG00000079304	Tex52	4933413G19Rik	testis expressed 52	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54686207-2	chr14	54685703	54686703	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_021437)	promoter-TSS (NM_021437)	32.0	NM_021437	58248.0	Mm.197509	NM_021437	ENSMUSG00000040822	1700123O20Rik	MNCb-2990	RIKEN cDNA 1700123O20 gene	protein-coding	1.0	42.0	12.5	7.0	38.5	39.0
Merged-chr4-86670036-4	chr4	86669537	86670537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007408)	promoter-TSS (NM_007408)	22.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	20.5	27.0	37.0	38.0	59.5	31.0
Merged-chr17-86447318-4	chr17	86446808	86447808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 2 of 14)	intron (NM_011104, intron 2 of 14)	-160130.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	10.5	8.0	4.0	9.5	21.0	24.0
Merged-chr7-13054775-4	chr7	13054260	13055260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290453)	promoter-TSS (NM_001290453)	4.0	NM_001290452	109889.0	Mm.10103	NM_145819	ENSMUSG00000030380	Mzf1	Mzf-2|Mzf2|Zfp121|Zfp98|Znf42	myeloid zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-115316025-3	chr10	115315545	115316545	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024454)	promoter-TSS (NM_024454)	-454.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67775303-4	chr18	67774801	67775801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045376)	TTS (NR_045376)	425.0	NM_028112	72124.0	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	45.0	121.0	86.5	41.0	76.0	88.0
Merged-chr9-66131568-6	chr9	66131052	66132052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359210, intron 1 of 3)	intron (NM_001359210, intron 1 of 3)	4941.0	NM_026635	68250.0	Mm.27107	NM_026635	ENSMUSG00000032381	Fam96a	5730536A07Rik	family with sequence similarity 96, member A	protein-coding	24.0	43.0	14.0	6.5	21.0	21.0
Merged-chr1-88699869-2	chr1	88699369	88700369	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177305, exon 1 of 1)	3' UTR (NM_177305, exon 1 of 1)	2322.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155099650-4	chr1	155099159	155100159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010500)	promoter-TSS (NM_010500)	-23.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-12979232-2	chr7	12978732	12979732	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001168561, exon 2 of 5)	exon (NM_001168561, exon 2 of 5)	1384.0	NM_001168561	269870.0	Mm.62083	NM_175558	ENSMUSG00000033961	Zfp446	A630035I11Rik|A930031C22|AA120513|AV306632	zinc finger protein 446	protein-coding	23.0	41.0	39.0	4.5	37.5	12.0
Merged-chr15-101248141-4	chr15	101247634	101248634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18712.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	24.5	74.0	30.5	10.0	34.5	26.0
Merged-chr3-109027771-4	chr3	109027229	109028229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163567)	promoter-TSS (NM_001163567)	-122.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	12.5	11.0	17.5	20.0	25.0	15.5
Merged-chr17-33955721-4	chr17	33955204	33956204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011296)	promoter-TSS (NM_011296)	-63.0	NM_011296	20084.0	Mm.298745	NM_011296	ENSMUSG00000008668	Rps18	H-2Ke3|H2-Ke3|Ke-3|ke3	ribosomal protein S18	protein-coding	209.5	549.0	278.5	216.0	385.5	309.5
Merged-chr5-138161050-4	chr5	138160548	138161548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012002)	promoter-TSS (NM_012002)	-54.0	NM_012002	26893.0	Mm.3981	NM_012002	ENSMUSG00000019494	Cops6	Sgn3|VIP/MOV34	COP9 signalosome subunit 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-108246522-4	chr5	108245988	108246988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22409.0	NM_026106	13486.0	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	8.0	33.5	24.0	11.0	38.5	18.5
Merged-chr2-79713802-4	chr2	79713308	79714308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110980, intron 2 of 2)	intron (NR_110980, intron 2 of 2)	6028.0	NM_001290743	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	0.0	1.5	2.5	0.0	0.5	0.5
Merged-chr2-115581658-4	chr2	115581150	115582150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145898)	promoter-TSS (NM_001145898)	-66.0	NM_207264	399568.0	Mm.134929	NM_207264	ENSMUSG00000040282	BC052040	-	cDNA sequence BC052040	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44394135-4	chr19	44393634	44394634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009127)	TTS (NM_009127)	13575.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3419133-4	chr2	3418625	3419625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355210)	promoter-TSS (NM_001355210)	4.0	NM_001355207	104362.0	Mm.2688	NM_008579	ENSMUSG00000026650	Meig1	MLZ-278|Meg1	meiosis expressed gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99377895-2	chr5	99377395	99378395	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-124968.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-30300576-4	chr6	30300099	30301099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009459, intron 1 of 6)	intron (NM_009459, intron 1 of 6)	3940.0	NM_009459	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115570511-4	chr8	115570022	115571022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136372.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23257461-4	chr11	23256966	23257966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035226, intron 2 of 25)	intron (NM_001035226, intron 2 of 25)	1425.0	NM_134014	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-77452101-4	chr8	77451616	77452616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 1 of 22)	(A)n|Simple_repeat|Simple_repeat	-64940.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79255958-4	chr2	79255429	79256429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010576, intron 1 of 27)	intron (NM_010576, intron 1 of 27)	503.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83166093-4	chr8	83165578	83166578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027758, exon 1 of 18)	exon (NM_027758, exon 1 of 18)	726.0	NM_027758	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	116.5	261.0	215.5	128.5	336.5	276.0
Merged-chr10-54075813-4	chr10	54075294	54076294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038016)	promoter-TSS (NR_038016)	2.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-126939607-4	chr6	126939114	126940114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138594)	promoter-TSS (NM_138594)	-27.0	NM_009013	19362.0	Mm.204634	NM_009013	ENSMUSG00000030346	Rad51ap1	2510006L10Rik|RAB22	RAD51 associated protein 1	protein-coding	17.0	77.0	27.5	23.0	45.0	34.0
Merged-chr15-101256243-4	chr15	101255736	101256736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10610.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	38.0	117.0	60.0	31.5	57.5	38.0
Merged-chr8-27259066-2	chr8	27258566	27259566	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1261.0	NM_007918	13685.0	Mm.6700	NM_007918	ENSMUSG00000031490	Eif4ebp1	4e-bp1|AA959816|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83651011-2	chr6	83650511	83651511	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016751, intron 4 of 6)	intron (NM_016751, intron 4 of 6)	5105.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	34.5	78.5	47.0	44.5	77.5	55.0
Merged-chr11-26211033-2	chr11	26210533	26211533	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027973)	promoter-TSS (NR_027973)	-457.0	NR_027973	70626.0	Mm.379180	NM_027486		5730522E02Rik	-	RIKEN cDNA 5730522E02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94214507-4	chr8	94214023	94215023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357266)	promoter-TSS (NM_001357266)	-41.0	NM_001357266	71805.0	Mm.458170	NM_172410	ENSMUSG00000032939	Nup93	2410008G02Rik	nucleoporin 93	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24393585-4	chr5	24393088	24394088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029020)	promoter-TSS (NM_029020)	-568.0	NM_029020	74610.0	Mm.283914	NM_029020	ENSMUSG00000028973	Abcb8	4833412N02Rik|AA409895	ATP-binding cassette, sub-family B (MDR/TAP), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74673511-4	chr15	74673017	74674017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276684)	promoter-TSS (NM_001276684)	-947.0	NM_018790	11838.0	Mm.491310	NM_018790	ENSMUSG00000022602	Arc	Arc3.1|C86064|arg3.1|mArc	activity regulated cytoskeletal-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5520910-4	chr11	5520426	5521426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001271730, exon 1 of 6)	5' UTR (NM_001271730, exon 1 of 6)	285.0	NM_001271730	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-10470666-4	chr15	10470150	10471150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030046)	promoter-TSS (NM_030046)	-134.0	NM_030046	78244.0	Mm.297862	NM_030046	ENSMUSG00000044224	Dnajc21	4930461P20Rik|9930116P15Rik	DnaJ heat shock protein family (Hsp40) member C21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-14117181-4	chr10	14116685	14117685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 4 of 12)	intron (NM_001358783, intron 4 of 12)	150806.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	1.0	11.0	2.0	6.0	7.0	9.5
Merged-chr8-126849918-5	chr8	126849393	126850393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151740, exon 2 of 2)	non-coding (NR_151740, exon 2 of 2)	873.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8566665-4	chr11	8566179	8567179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	97856.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	156.0	291.0	202.0	124.5	288.5	225.5
Merged-chr2-6720283-2	chr2	6719783	6720783	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	1379.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45114091-4	chr2	45113574	45114574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355289)	promoter-TSS (NM_001355289)	-795.0	NM_015753	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115468167-3	chr6	115467663	115468663	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 6 of 7)	intron (NM_001308354, intron 6 of 7)	46097.0	NM_011146	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108784576-1	chr8	108784076	108785076	+	1000.0	f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	B3|SINE|B2	69932.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	2.0	15.0	21.0	3.0	31.0	13.0
Merged-chr8-115650417-4	chr8	115649930	115650930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56464.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43262983-4	chr4	43262367	43263367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081413, intron 38 of 39)	intron (NM_001081413, intron 38 of 39)	-4292.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	16.5	30.5	25.5	24.0	38.0	44.5
Merged-chr5-122158211-4	chr5	122157674	122158674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013636)	promoter-TSS (NM_013636)	-105.0	NM_013636	19047.0	Mm.280784	NM_013636	ENSMUSG00000004455	Ppp1cc	PP-1G|PP1|dis2m1	protein phosphatase 1, catalytic subunit, gamma isoform	protein-coding	26.0	71.0	30.0	30.5	35.5	31.5
Merged-chr2-157080028-2	chr2	157079528	157080528	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164663)	promoter-TSS (NM_001164663)	-763.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-57511715-4	chr8	57511213	57512213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008252)	promoter-TSS (NM_008252)	-130.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115645969-2	chr11	115645469	115646469	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 5 of 5)	intron (NM_001313936, intron 5 of 5)	-17674.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136114890-2	chr5	136114390	136115390	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCC)n|Simple_repeat|Simple_repeat	-1801.0	NM_011293	20022.0	Mm.4896	NM_011293	ENSMUSG00000039771	Polr2j	14.5kDa|Polr2i|Rpb11a|Rpo2-4	polymerase (RNA) II (DNA directed) polypeptide J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23716457-4	chr13	23715929	23716929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-5575.0	NM_010424	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99382712-4	chr9	99382202	99383202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24172.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50357806-4	chr14	50357314	50358314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_205819)	promoter-TSS (NM_205819)	-100.0	NM_205819	239081.0	Mm.291512	NM_205819	ENSMUSG00000051969	Tlr11	Gm287	toll-like receptor 11	protein-coding	96.5	107.0	60.5	10.0	18.5	40.0
Merged-chr1-123919844-4	chr1	123919363	123920363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199021, intron 1 of 25)	intron (NM_199021, intron 1 of 25)	125696.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	10.0	93.0	54.0	49.0	45.5	33.0
Merged-chr9-73039637-4	chr9	73039065	73040065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308425)	promoter-TSS (NM_001308425)	134.0	NM_018889	55981.0	Mm.139905	NM_018889	ENSMUSG00000079469	Pigb	Pig-b	phosphatidylinositol glycan anchor biosynthesis, class B	protein-coding	0.5	3.0	6.0	0.0	1.5	11.5
Merged-chr15-99388851-2	chr15	99388351	99389351	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4096.0	NM_026669	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5334912-4	chr18	5334421	5335421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178722)	promoter-TSS (NM_178722)	-114.0	NM_001360447	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-3360519-2	chr13	3360019	3361019	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-117784.0	NR_015522	76937.0	Mm.487240	NR_015522	ENSMUSG00000097709	2810429I04Rik	AI256682	RIKEN cDNA 2810429I04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113648082-2	chr6	113647582	113648582	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	RSINE1|SINE|B4	9615.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-33900327-4	chr1	33899841	33900841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 1 of 6)	intron (NM_177235, intron 1 of 6)	7280.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55697460-4	chr14	55696938	55697938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-15621.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-105633650-4	chr7	105633154	105634154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285871)	promoter-TSS (NM_001285871)	-83.0	NM_001285871	55992.0	Mm.29290	NM_018880	ENSMUSG00000036989	Trim3	BERP1|HAC1|Rnf22	tripartite motif-containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38938635-4	chr6	38938152	38939152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	intron (NM_011539, intron 1 of 12)	19666.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-37044869-4	chr17	37044418	37045418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20B|DNA|hAT-Charlie	-1048.0	NM_019439	54393.0	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3904113-4	chr12	3903622	3904622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 14 of 17)	intron (NM_153743, intron 14 of 17)	12378.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85346600-4	chr12	85346087	85347087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 3 of 4)	intron (NM_026775, intron 3 of 4)	-7225.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-96793464-4	chr5	96793000	96794000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013470, exon 1 of 13)	5' UTR (NM_013470, exon 1 of 13)	115.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	10.5	29.5	49.0	18.5	47.5	46.0
Merged-chr13-77135449-4	chr13	77134911	77135911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145676)	promoter-TSS (NM_001145676)	57.0	NM_134071	105377.0	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding	19.0	27.0	28.5	32.5	28.5	27.0
Merged-chr4-155732781-4	chr4	155732261	155733261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026899, intron 4 of 4)	intron (NM_026899, intron 4 of 4)	-2043.0	NM_001101506	381582.0	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	61.5	78.5	121.0	61.0	78.5	121.5
Merged-chr12-40553804-4	chr12	40553300	40554300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	107747.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70211910-1	chr8	70211410	70212410	+	1000.0	f1_balb.idr	intron (NM_001007570, intron 1 of 7)	CpG	371.0	NM_001007570	73095.0	Mm.185413	NM_001007570	ENSMUSG00000002346	Slc25a42	2900084M01Rik	solute carrier family 25, member 42	protein-coding	30.0	75.5	55.0	37.0	51.0	34.0
Merged-chr3-137980864-4	chr3	137980368	137981368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 1 of 8)	intron (NM_011932, intron 1 of 8)	681.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	30.5	141.5	106.0	52.5	90.5	95.0
Merged-chr15-4027422-4	chr15	4026918	4027918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028266)	promoter-TSS (NR_028266)	-12.0	NR_028266	414066.0	Mm.394461	NR_028266		BC037032	-	cDNA Sequence BC037032	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95434304-4	chr3	95433799	95434799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009709)	promoter-TSS (NM_009709)	-91.0	NM_009709	11863.0	Mm.250265	NM_009709	ENSMUSG00000015522	Arnt	D3Ertd557e|Drnt|ESTM42|Hif1b|W08714|bHLHe2|mKIAA4051	aryl hydrocarbon receptor nuclear translocator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117909302-4	chr10	117908773	117909773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-16186.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	44.0	64.5	60.0	42.5	96.0	79.0
Merged-chr1-121431087-4	chr1	121430586	121431586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025156)	promoter-TSS (NM_001025156)	19.0	NM_029955	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	115.0	227.5	193.5	112.0	228.0	177.5
Merged-chr1-36132221-2	chr1	36131721	36132721	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12092.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-109059729-4	chr9	109059193	109060193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011637)	promoter-TSS (NM_011637)	30.0	NM_011637	22040.0	Mm.439964	NM_011637	ENSMUSG00000049734	Trex1	AU041952	three prime repair exonuclease 1	protein-coding	135.0	164.5	129.5	77.5	235.5	94.0
Merged-chr2-84505227-3	chr2	84504737	84505737	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046046, intron 1 of 2)	IAPLTR1_Mm|LTR|ERVK	1636.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	57.0	114.0	9.5	3.0	19.0	1.0
Merged-chr10-34328584-2	chr10	34328084	34329084	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347463, intron 5 of 10)	intron (NM_001347463, intron 5 of 10)	31163.0	NM_030203	72480.0	Mm.21485	NM_030203	ENSMUSG00000039485	Tspyl4	2610102M01Rik|B230210I21Rik|D10Bwg0791e	TSPY-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24657296-2	chr17	24656882	24657882	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001099664)	TTS (NM_001099664)	1043.0	NM_001099664	381073.0	Mm.291772	NM_001099664	ENSMUSG00000071230	Npw	Gm935	neuropeptide W	protein-coding	0.0	0.5	2.0	0.5	2.5	2.0
Merged-chr3-152479080-6	chr3	152478561	152479561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081277, intron 11 of 13)	intron (NM_001081277, intron 11 of 13)	82377.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-140036558-6	chr7	140036036	140037036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133755)	promoter-TSS (NM_133755)	138.0	NM_001286007	74237.0	Mm.40888	NM_133755	ENSMUSG00000025474	Tubgcp2	1700022B05Rik	tubulin, gamma complex associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5365927-2	chr19	5365427	5366427	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027236)	promoter-TSS (NM_027236)	436.0	NM_001038231	23825.0	Mm.358649	NM_011793	ENSMUSG00000024844	Banf1	Baf|Bcrp1|L2bp1/Baf	barrier to autointegration factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127577098-2	chr10	127576598	127577598	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 22 of 88)	intron (NM_008512, intron 22 of 88)	-42539.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43053881-1	chr4	43053381	43054381	+	1000.0	f1_balb.idr	Intergenic	B2_Mm1a|SINE|B2	-5072.0	NM_021468	22249.0	Mm.128892	NM_021468	ENSMUSG00000028456	Unc13b	Munc13-1|Munc13-2|Unc13a|Unc13h1|Unc13h2	unc-13 homolog B (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30065745-2	chr16	30065245	30066245	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008235, intron 1 of 3)	intron (NM_008235, intron 1 of 3)	388.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120516273-4	chr5	120515780	120516780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 2 of 13)	intron (NM_001177595, intron 2 of 13)	5088.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107624744-4	chr9	107624238	107625238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008138, intron 1 of 8)	intron (NM_008138, intron 1 of 8)	10604.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	76.0	140.5	111.0	40.0	108.0	56.0
Merged-chr5-137644690-2	chr5	137644190	137645190	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010571, exon 2 of 2)	exon (NM_010571, exon 2 of 2)	1024.0	NM_010571	16369.0	Mm.24486	NM_010571	ENSMUSG00000047182	Irs3	AA408304	insulin receptor substrate 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5457546-4	chr19	5457033	5458033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243307)	promoter-TSS (NM_001243307)	30.0	NM_198616	240514.0	Mm.329657	NM_198616	ENSMUSG00000095098	Ccdc85b	AI842788|BB115872	coiled-coil domain containing 85B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-85113659-4	chr15	85113157	85114157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080470, intron 9 of 24)	intron (NM_080470, intron 9 of 24)	18300.0	NM_080470	140557.0	Mm.182737	NM_080470	ENSMUSG00000022432	Smc1b	SMC-1B|SMC1beta|Smc1l2	structural maintenance of chromosomes 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35634112-4	chr8	35633631	35634631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-45111.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	12.5	28.5	13.5	9.0	42.0	13.0
Merged-chr6-135296539-4	chr6	135296036	135297036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13848.0	NM_029595	76400.0	Mm.293018	NM_029595	ENSMUSG00000047104	Pbp2	1700023A18Rik|AI326308|Pebp-2|Pebp2	phosphatidylethanolamine binding protein 2	protein-coding	16.5	32.5	27.0	65.0	71.0	92.0
Merged-chr13-41883894-4	chr13	41883436	41884436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033545, exon 2 of 7)	non-coding (NR_033545, exon 2 of 7)	18021.0	NR_033545	100038577.0	Mm.387093	NR_033545	ENSMUSG00000113856	Gm10790	-	predicted gene 10790	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102693925-2	chr15	102693425	102694425	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22059.0	NR_030460	751542.0		NR_030460	ENSMUSG00000076009	Mir688	Mirn688|mmu-mir-688	microRNA 688	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128078885-4	chr8	128078391	128079391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	199334.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	27.5	52.0	30.5	30.0	50.5	33.5
Merged-chr1-79761740-4	chr1	79761252	79762252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111279)	promoter-TSS (NM_001111279)	17.0	NM_001111279	69368.0	Mm.293273	NM_027057	ENSMUSG00000073643	Wdfy1	1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435	WD repeat and FYVE domain containing 1	protein-coding	23.0	85.5	44.5	22.5	90.0	49.0
Merged-chr8-121113444-4	chr8	121112932	121113932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2739.0	NM_013519	14234.0	Mm.14092	NM_013519	ENSMUSG00000046714	Foxc2	Fkh14|Hfhbf3|MFH-1|Mfh1	forkhead box C2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100964370-4	chr7	100963877	100964877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183168)	promoter-TSS (NM_183168)	-11.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130274366-4	chr2	130273846	130274846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024193)	promoter-TSS (NM_024193)	-66.0	NM_024193	67134.0	Mm.29363	NM_024193	ENSMUSG00000027405	Nop56	2310044F10Rik|Nol5a	NOP56 ribonucleoprotein	protein-coding	10.5	55.5	49.5	10.5	46.0	32.5
Merged-chr7-63904776-2	chr7	63904276	63905276	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	L1MC3|LINE|L1	-12081.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	8.0	18.0	8.5	4.0	10.5	2.0
Merged-chr5-21189210-4	chr5	21188705	21189705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 1 of 26)	intron (NR_153365, intron 1 of 26)	2938.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129471579-4	chr6	129471069	129472069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020008, intron 1 of 5)	intron (NM_020008, intron 1 of 5)	1210.0	NM_001309637	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	78.0	205.0	125.5	29.0	139.5	114.5
Merged-chr6-124662936-4	chr6	124662413	124663413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145130)	promoter-TSS (NM_145130)	-191.0	NR_149320	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70230528-4	chr11	70230024	70231024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007528)	promoter-TSS (NM_007528)	-726.0	NM_007528	12029.0	Mm.12930	NM_007528	ENSMUSG00000000317	Bcl6b	Bazf	B cell CLL/lymphoma 6, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96699771-4	chr15	96699270	96700270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175121)	promoter-TSS (NM_175121)	-42.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20708961-2	chr16	20708461	20709461	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009900, intron 15 of 23)	intron (NM_009900, intron 15 of 23)	7675.0	NM_009900	12724.0	Mm.177761	NM_009900	ENSMUSG00000022843	Clcn2	AL118368|ClC-2|Clc2|nmf240	chloride channel, voltage-sensitive 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-52383141-4	chr12	52382624	52383624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GGGTG)n|Simple_repeat|Simple_repeat	97485.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82566268-4	chr11	82565781	82566781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67072.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95032707-2	chr13	95032207	95033207	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172263, intron 17 of 19)	intron (NM_172263, intron 17 of 19)	56363.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122576862-4	chr8	122576368	122577368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009698)	promoter-TSS (NM_009698)	39.0	NM_009698	11821.0	Mm.1786	NM_009698	ENSMUSG00000006589	Aprt	C85684	adenine phosphoribosyl transferase	protein-coding	7.0	14.0	15.5	7.0	14.0	15.5
Merged-chr16-57569183-4	chr16	57568687	57569687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	MIR|SINE|MIR	19945.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	19.5	47.0	40.0	19.0	47.5	38.5
Merged-chr6-38900317-4	chr6	38899835	38900835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-18651.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88765003-4	chr5	88764517	88765517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007832)	promoter-TSS (NM_007832)	4.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-33782840-4	chr5	33782344	33783344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019694)	promoter-TSS (NM_019694)	-140.0	NM_019694	56384.0	Mm.260538	NM_019694	ENSMUSG00000005299	Letm1	-	leucine zipper-EF-hand containing transmembrane protein 1	protein-coding	4.0	28.5	15.5	6.5	12.5	20.0
Merged-chr10-10553147-4	chr10	10552653	10553653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026405, intron 1 of 2)	intron (NM_026405, intron 1 of 2)	5054.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	4.5	13.0	5.0	4.5	13.0	6.5
Merged-chr1-144299723-2	chr1	144299223	144300223	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50619.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132054080-2	chr2	132053580	132054580	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001355430, exon 16 of 16)	3' UTR (NM_001355430, exon 16 of 16)	-24092.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31688214-4	chr2	31687728	31688728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001283047)	promoter-TSS (NM_001283047)	241.0	NR_153862	108168742.0	Mm.416860	NR_153862		Gm13427	-	predicted gene 13427	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-52158940-4	chr1	52158440	52159440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205313, intron 24 of 24)	intron (NM_001205313, intron 24 of 24)	39318.0	NM_001205313	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-72791866-4	chr9	72791348	72792348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15426.0	NM_175485	235472.0	Mm.31696	NM_175485	ENSMUSG00000036030	Prtg	A230098A12Rik|Igdcc5	protogenin	protein-coding	1.5	9.0	4.0	0.0	12.0	9.5
Merged-chr3-95263417-4	chr3	95262918	95263918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173347, intron 4 of 7)	intron (NM_173347, intron 4 of 7)	-12225.0	NM_134253	171388.0	Mm.331209	NM_134253	ENSMUSG00000028115	Bnipl	1700128A13Rik|BNIP-S|BNIPL1|BNIPL2|PP73|PP753	BCL2/adenovirus E1B 19kD interacting protein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43747982-4	chr7	43747454	43748454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_077063, intron 2 of 2)	intron (NR_077063, intron 2 of 2)	7982.0	NR_077063	100504720.0	Mm.226595	NR_077063		2310002F09Rik	-	RIKEN cDNA 2310002F09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9713716-4	chr3	9713221	9714221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	-103636.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121386535-5	chr5	121386047	121387047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163470)	promoter-TSS (NM_001163470)	-932.0	NM_172275	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	160.0	294.0	157.5	174.0	342.5	188.5
Merged-chr10-81125741-2	chr10	81125241	81126241	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10530.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-75168988-4	chr1	75168497	75169497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026846, intron 1 of 8)	intron (NM_026846, intron 1 of 8)	262.0	NM_026846	68818.0	Mm.32646	NM_026846	ENSMUSG00000026197	Zfand2b	1110060O18Rik|C81256	zinc finger, AN1 type domain 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118156724-4	chr11	118156242	118157242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27523.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119857968-4	chr8	119857461	119858461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4344.0	NM_146219	234796.0	Mm.86446	NM_146219	ENSMUSG00000031828	Klhl36	-	kelch-like 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158409734-4	chr2	158409220	158410220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291138)	promoter-TSS (NM_001291138)	-133.0	NM_001291137	228850.0	Mm.398185	NM_177227	ENSMUSG00000027652	Ralgapb	AI507211|B230339M05Rik|p170	Ral GTPase activating protein, beta subunit (non-catalytic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-64440735-4	chr14	64440261	64441261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026322, exon 6 of 11)	exon (NM_026322, exon 6 of 11)	265.0	NM_001253715	110265.0	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58499838-4	chr16	58499356	58500356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 2 of 10)	intron (NM_001357433, intron 2 of 10)	23570.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94355585-4	chr10	94355075	94356075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	43626.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117087181-4	chr11	117086671	117087671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9823.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130525243-3	chr2	130524750	130525750	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355161, intron 7 of 21)	intron (NM_001355161, intron 7 of 21)	38499.0	NR_040348	321014.0	Mm.442588	NR_040348	ENSMUSG00000060029	4930473A02Rik	-	RIKEN cDNA 4930473A02 gene	ncRNA	72.0	172.5	124.0	133.5	386.5	286.5
Merged-chr7-16614688-2	chr7	16614181	16615181	+	1000.0	f0_balb.idr|f0_c57.idr	5' UTR (NM_172739, exon 1 of 7)	5' UTR (NM_172739, exon 1 of 7)	312.0	NM_172739	232906.0	Mm.28646	NM_172739	ENSMUSG00000058230	Arhgap35	6430596G11Rik|AI841135|Grlf1|mKIAA1722|p190A|p190RhoGAP	Rho GTPase activating protein 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60876707-4	chr13	60876191	60877191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	-12275.0	NM_178098	214639.0	Mm.19839	NM_178098	ENSMUSG00000050345	4930486L24Rik	AW545031	RIKEN cDNA 4930486L24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131184527-4	chr1	131184016	131185016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018750, intron 2 of 5)	intron (NM_018750, intron 2 of 5)	15669.0	NM_001311094	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12783423-4	chr17	12782913	12783913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027784, intron 2 of 2)	intron (NR_027784, intron 2 of 2)	-13707.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-15575126-3	chr3	15574629	15575629	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001173460)	promoter-TSS (NM_001173460)	-64.0	NM_001173460	668101.0	Mm.423523	NM_001173460	ENSMUSG00000095028	Sirpb1b	-	signal-regulatory protein beta 1B	protein-coding	16.5	50.5	51.5	21.5	39.0	43.5
Merged-chr10-116950426-4	chr10	116949875	116950875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038025)	promoter-TSS (NR_038025)	78.0	NM_001359645	216363.0	Mm.336394	NM_001003950	ENSMUSG00000064181	Rab3ip	B230311A06|Gtpat12|Rabin3	RAB3A interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-17056221-4	chr7	17055723	17056723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016868, intron 2 of 14)	CpG	456.0	NM_016868	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	1.5	0.0	7.0	3.0	0.0	0.0
Merged-chr11-29705409-4	chr11	29704916	29705916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194051, intron 1 of 8)	intron (NM_194051, intron 1 of 8)	11642.0	NM_194051	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	15.0	45.0	31.0	21.5	18.5	23.0
Merged-chr19-3575933-4	chr19	3575442	3576442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028999)	promoter-TSS (NM_028999)	-193.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	49.0	193.5	155.0	56.0	196.5	158.5
Merged-chr4-134914990-4	chr4	134914487	134915487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027935)	promoter-TSS (NM_027935)	-71.0	NM_027935	71817.0	Mm.88349	NM_027935	ENSMUSG00000028822	Tmem50a	3200001F09Rik|CAM|Smp1	transmembrane protein 50A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128804877-2	chr4	128804377	128805377	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081098, intron 1 of 8)	intron (NM_001081098, intron 1 of 8)	1235.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55827036-2	chr14	55826536	55827536	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_023699, exon 2 of 10)	exon (NM_023699, exon 2 of 10)	2241.0	NM_023699	73181.0	Mm.27908	NM_023699	ENSMUSG00000023411	Nfatc4	3110041H08Rik|AW107667|AW546455|Nfat3	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-75551967-4	chr17	75551472	75552472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133747)	promoter-TSS (NM_133747)	-26.0	NM_001357860	72722.0	Mm.24641	NM_133747	ENSMUSG00000002017	Fam98a	2810405J04Rik|AL024114	family with sequence similarity 98, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122648669-2	chr5	122648169	122649169	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038845, intron 1 of 12)	MIR|SINE|MIR	-1755.0	NM_001284402	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-39847214-4	chr17	39846733	39847733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_046233, exon 1 of 1)	non-coding (NR_046233, exon 1 of 1)	4236.0	NR_046233	100861531.0		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-8376833-4	chr18	8376313	8377313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	507100.0	NM_001360956	225131.0	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82147141-4	chr15	82146653	82147653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033218)	promoter-TSS (NM_033218)	-116.0	NM_033218	20788.0	Mm.38016	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31253371-4	chr6	31252876	31253876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040257, intron 2 of 7)	intron (NR_040257, intron 2 of 7)	33025.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6268973-4	chr19	6268475	6269475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC4|LINE|L1	4131.0	NR_029720	387187.0		NR_029720	ENSMUSG00000065523	Mir192	Mirn192|mir-192|mmu-mir-192	microRNA 192	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147938341-4	chr4	147937859	147938859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1583.0	NM_011122	18822.0	Mm.23951	NM_011122	ENSMUSG00000019055	Plod1	2410042F05Rik|AI854890|AV007929|Lh1|Plod	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-18630628-4	chr19	18630120	18631120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	1193.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	74.0	149.0	111.0	89.5	146.0	138.0
Merged-chr16-14163225-4	chr16	14162736	14163736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023317)	promoter-TSS (NM_023317)	-39.0	NM_023317	67203.0	Mm.24105	NM_023317	ENSMUSG00000022678	Nde1	2810027M15Rik|AU042936|AW822251|Nude|mNudE	nudE neurodevelopment protein 1	protein-coding	3.0	21.5	16.5	14.0	27.5	9.5
Merged-chr17-42876626-4	chr17	42876119	42877119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009847)	promoter-TSS (NM_009847)	-195.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	125.0	462.5	368.0	199.5	370.5	350.0
Merged-chr2-124711232-4	chr2	124710724	124711724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57643.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-134644191-4	chr2	134643678	134644678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029148)	promoter-TSS (NM_029148)	-57.0	NM_029148	52837.0	Mm.264096	NM_029148	ENSMUSG00000034723	Tmx4	2810417D04Rik|4930500L08Rik|AI843224|AW046784|D2Bwg1356e|Txndc13|mKIAA1162	thioredoxin-related transmembrane protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191328120-4	chr1	191327670	191328670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025864, intron 1 of 7)	intron (NM_025864, intron 1 of 7)	2205.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	84.5	220.5	165.0	77.0	204.0	192.5
Merged-chr12-87260683-4	chr12	87260144	87261144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_134044, exon 3 of 19)	exon (NM_134044, exon 3 of 19)	3600.0	NM_134044	104799.0	Mm.208750	NM_134044	ENSMUSG00000021038	Vipas39	6720456H09Rik|9330175H22Rik|AI413782|SPE-39|Spe39|Vipar|hSPE-39	VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-23975225-4	chr5	23974729	23975729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053090, intron 10 of 10)	intron (NM_053090, intron 10 of 10)	55083.0	NM_001310471	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	39.5	58.0	40.5	28.5	56.0	69.0
Merged-chr7-123397573-4	chr7	123397057	123398057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025304, intron 1 of 10)	intron (NM_025304, intron 1 of 10)	-10260.0	NM_001355050	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123065028-2	chr8	123064528	123065528	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153176)	promoter-TSS (NM_153176)	-480.0	NM_153176	234847.0	Mm.292075	NM_153176	ENSMUSG00000000738	Spg7	AI452278|AU015315|Cmar|PGN	SPG7, paraplegin matrix AAA peptidase subunit	protein-coding	21.0	62.5	43.0	24.0	79.0	48.0
Merged-chr13-69612445-2	chr13	69611945	69612945	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175283)	promoter-TSS (NM_175283)	429.0	NM_145354	28114.0	Mm.260009	NM_145354	ENSMUSG00000021595	Nsun2	D13Wsu123e|Misu	NOL1/NOP2/Sun domain family member 2	protein-coding	5.5	2.5	3.5	7.0	4.0	2.5
Merged-chr2-150823190-4	chr2	150822688	150823688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153781, intron 14 of 19)	ORR1F|LTR|ERVL-MaLR	19382.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-49428350-4	chr17	49427852	49428852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028464)	promoter-TSS (NM_028464)	-12.0	NM_028464	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	0.5	16.0	16.5	1.0	23.5	10.0
Merged-chr9-107541549-2	chr9	107541049	107542049	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018879)	promoter-TSS (NM_018879)	316.0	NM_019720	56368.0	Mm.24833	NM_019720	ENSMUSG00000037190	Cyb561d2	AW049681|Tsp10	cytochrome b-561 domain containing 2	protein-coding	1.5	27.0	14.5	4.0	26.5	16.5
Merged-chr2-12084583-4	chr2	12084130	12085130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-216616.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87802653-4	chr6	87802166	87803166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104478, intron 1 of 2)	ORR1F|LTR|ERVL-MaLR	7091.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146108193-4	chr3	146107705	146108705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172864)	promoter-TSS (NM_172864)	-169.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	22.5	101.5	42.5	22.5	137.0	44.5
Merged-chr4-42949776-4	chr4	42949282	42950282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355440)	promoter-TSS (NM_001355440)	-85.0	NM_001355438	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65476029-4	chr5	65475532	65476532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133697, intron 1 of 4)	intron (NM_133697, intron 1 of 4)	16803.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91202941-4	chr2	91202425	91203425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007387)	promoter-TSS (NM_007387)	13.0	NM_007387	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139191719-4	chr4	139191245	139192245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1154.0	NM_009798	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	64.5	231.5	124.0	39.0	161.0	115.5
Merged-chr3-79128011-4	chr3	79127526	79128526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099624, intron 1 of 23)	intron (NM_001099624, intron 1 of 23)	16861.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	36.5	96.5	81.0	44.5	97.5	46.5
Merged-chr2-130840065-4	chr2	130839609	130840609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311147)	promoter-TSS (NM_001311147)	36.0	NM_029432	228602.0	Mm.271990	NM_028367	ENSMUSG00000027309	4930402H24Rik	2810487F15Rik|AI413763|C78926	RIKEN cDNA 4930402H24 gene	protein-coding	14.0	9.0	9.0	13.0	17.5	10.0
Merged-chr19-29064709-4	chr19	29064168	29065168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2633.0	NR_045687	100503337.0	Mm.103412	NR_045687		Gm9895	-	predicted gene 9895	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32363049-4	chr2	32362559	32363559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028412)	promoter-TSS (NM_028412)	49.0	NM_001252536	68379.0	Mm.170508	NM_028412	ENSMUSG00000039205	Ciz1	0610038H21Rik|2900056O04Rik|LSFR1|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-131362812-4	chr7	131362299	131363299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026655)	promoter-TSS (NM_026655)	-73.0	NR_152380	68277.0	Mm.121122	NM_026655	ENSMUSG00000040177	2310057M21Rik	3110040E10Rik|AI429544	RIKEN cDNA 2310057M21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74867028-4	chr17	74866540	74867540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138489.0	NM_019919	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	17.5	16.5	28.5	6.5	5.0	5.0
Merged-chr4-149665203-4	chr4	149664697	149665697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029837, intron 2 of 23)	intron (NM_001029837, intron 2 of 23)	-1881.0	NM_001164052	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	4.0	4.5	7.0	2.5	7.5	2.5
Merged-chr11-89985411-4	chr11	89984899	89985899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316372, intron 4 of 4)	intron (NM_001316372, intron 4 of 4)	17495.0	NM_008796	18559.0	Mm.5062	NM_008796	ENSMUSG00000020553	Pctp	PC-TP|StarD2	phosphatidylcholine transfer protein	protein-coding	3.5	15.0	18.0	5.0	20.5	15.0
Merged-chr16-16146821-4	chr16	16146309	16147309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146068)	promoter-TSS (NM_146068)	42.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95684902-4	chr10	95684394	95685394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-120748.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117876675-4	chr10	117876163	117877163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30689.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	20.0	57.5	69.5	34.0	69.5	57.0
Merged-chr10-70287503-4	chr10	70286997	70287997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42221.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55302686-4	chr12	55302202	55303202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025373)	promoter-TSS (NM_025373)	65.0	NM_025373	66132.0	Mm.383213	NM_025373	ENSMUSG00000021023	1110008L16Rik	Kiaa0391|Mrpp3|mKIAA0391	RIKEN cDNA 1110008L16 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-16233749-4	chr9	16233226	16234226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	MTC|LTR|ERVL-MaLR	144505.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79146492-4	chr11	79145981	79146981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013571)	promoter-TSS (NM_013571)	-8.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54688212-4	chr13	54687692	54688692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146025)	promoter-TSS (NM_001146025)	8.0	NM_001146027	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-93551302-4	chr4	93550810	93551810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-215799.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	2.0	3.0	5.0	0.0	4.0	0.5
Merged-chr5-114810744-2	chr5	114810244	114811244	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027817, intron 1 of 1)	B3A|SINE|B2	3232.0	NR_027818	66236.0	Mm.268546	NR_027817	ENSMUSG00000072694	1500011B03Rik	AI415201|AV141149|AW556386	RIKEN cDNA 1500011B03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61914006-3	chr8	61913530	61914530	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11336.0	NM_001293772	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47004267-4	chr19	47003744	47004744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164363, intron 1 of 17)	intron (NM_001164363, intron 1 of 17)	-10454.0	NM_146100	226180.0	Mm.276251	NM_146100	ENSMUSG00000034336	Ina	AV028420|NF-66|NF66	internexin neuronal intermediate filament protein, alpha	protein-coding	0.0	2.0	0.5	4.0	0.0	0.0
Merged-chr7-143829579-4	chr7	143829053	143830053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007856, intron 1 of 8)	intron (NM_007856, intron 1 of 8)	6386.0	NM_007856	13360.0	Mm.249342	NM_007856	ENSMUSG00000058454	Dhcr7	AA409147	7-dehydrocholesterol reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95770721-4	chr4	95770223	95771223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029347, intron 8 of 10)	intron (NM_029347, intron 8 of 10)	191302.0	NM_029347	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0.0	3.0	4.5	0.0	4.0	1.0
Merged-chr11-118253445-2	chr11	118252945	118253945	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4853.0	NM_011180	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5422946-2	chr17	5422446	5423446	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027457, intron 3 of 3)	intron (NM_027457, intron 3 of 3)	-4179.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8144104-4	chr17	8143643	8144643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026611, intron 2 of 8)	intron (NM_026611, intron 2 of 8)	3645.0	NM_001083938	100037283.0	Mm.426736	NM_001083938	ENSMUSG00000095687	Rnaset2a	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115119680-4	chr11	115119180	115120180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001169153, intron 4 of 6)	intron (NM_001169153, intron 4 of 6)	14312.0	NM_001347648	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87108078-2	chr17	87107578	87108578	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019654, intron 1 of 2)	CpG	399.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	4.0	25.0	14.0	4.0	25.0	15.5
Merged-chr14-76171479-4	chr14	76170992	76171992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60601.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98146901-2	chr11	98146401	98147401	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028149, intron 1 of 14)	intron (NM_028149, intron 1 of 14)	2715.0	NM_028149	72194.0	Mm.218350	NM_028149	ENSMUSG00000020883	Fbxl20	2610511F20Rik|4632423N09Rik|AI849362|AL117906|C86145|Fbl2|Scr|mKIAA4147	F-box and leucine-rich repeat protein 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31614055-4	chr5	31613548	31614548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025796)	promoter-TSS (NM_025796)	97.0	NM_025796	66845.0	Mm.120763	NM_025796	ENSMUSG00000106918	Mrpl33	0610009M10Rik|L33mt|MRP-L33	mitochondrial ribosomal protein L33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97964135-4	chr15	97963619	97964619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252153)	promoter-TSS (NM_001252153)	-110.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29360936-2	chr19	29360436	29361436	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026362, intron 1 of 5)	intron (NM_026362, intron 1 of 5)	935.0	NM_026362	67759.0	Mm.275511	NM_026362	ENSMUSG00000016495	Plgrkt	1110007H22Rik|5033414D02Rik|AI852040|Plg-R(KT)|Plg-RKT	plasminogen receptor, C-terminal lysine transmembrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45780490-2	chr19	45779998	45780998	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023799, intron 1 of 15)	RSINE1|SINE|B4	3055.0	NR_151594	76055.0	Mm.122725	NM_023799	ENSMUSG00000025220	Mgea5	Hy5|Ncoat|OGA	meningioma expressed antigen 5 (hyaluronidase)	protein-coding	5.0	1.5	2.0	0.0	3.5	3.5
Merged-chr1-74392205-4	chr1	74391727	74392727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153088, intron 1 of 6)	CpG	618.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91875087-2	chr16	91874587	91875587	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	56543.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91117006-4	chr6	91116518	91117518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018815)	promoter-TSS (NM_018815)	-192.0	NM_018815	54563.0	Mm.28162	NM_018815	ENSMUSG00000030091	Nup210	9830001L10|AI836801|Pom210|gp190|gp210	nucleoporin 210	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-47680515-4	chr8	47680022	47681022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5363.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35036321-3	chr7	35035835	35036835	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 12 of 14)	intron (NM_008820, intron 12 of 14)	20231.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14890480-3	chr8	14889984	14890984	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012000, intron 1 of 2)	intron (NM_012000, intron 1 of 2)	1948.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113614126-4	chr13	113613637	113614637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	4427.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29467697-4	chr6	29467192	29468192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025381)	promoter-TSS (NM_025381)	-91.0	NM_025381	66144.0	Mm.371614	NM_025381	ENSMUSG00000004285	Atp6v1f	1110004G16Rik	ATPase, H+ transporting, lysosomal V1 subunit F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51237716-4	chr14	51237240	51238240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18372.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	33.5	9.0	30.0	15.0	25.0	11.5
Merged-chr5-29731133-4	chr5	29730624	29731624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4774.0	NM_001359198	23950.0	Mm.290110	NM_011847	ENSMUSG00000029131	Dnajb6	HSJ-2|Mrj|mDj4	DnaJ heat shock protein family (Hsp40) member B6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102830330-2	chr14	102829830	102830830	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	152302.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105821335-2	chr5	105820835	105821835	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55233.0	NR_030777	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62583419-2	chr10	62582919	62583919	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019553, intron 13 of 14)	intron (NM_019553, intron 13 of 14)	-4962.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110653075-2	chr9	110652582	110653582	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183276, intron 1 of 53)	intron (NM_183276, intron 1 of 53)	1079.0	NM_183276	235627.0	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding	0.5	3.5	1.0	0.0	7.0	3.5
Merged-chr9-49427629-3	chr9	49427093	49428093	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172922)	promoter-TSS (NM_172922)	-572.0	NM_172922	244859.0	Mm.119994	NM_172922	ENSMUSG00000032257	Ankk1	9930020N01Rik	ankyrin repeat and kinase domain containing 1	protein-coding	0.0	0.0	0.5	9.5	21.5	10.0
Merged-chr11-69326187-4	chr11	69325681	69326681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010599)	promoter-TSS (NM_010599)	-77.0	NM_010599	16499.0	Mm.232472	NM_010599	ENSMUSG00000018470	Kcnab3	C330022D06Rik|Kcnab4|mKv(beta)4	potassium voltage-gated channel, shaker-related subfamily, beta member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24105499-4	chr13	24104991	24105991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026825, intron 17 of 37)	MTEa|LTR|ERVL-MaLR	-114277.0	NM_145399	214189.0	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76309344-4	chr16	76308842	76309842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358238, intron 3 of 3)	intron (NM_001358238, intron 3 of 3)	63707.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118709915-4	chr14	118709424	118710424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-3705.0	NM_001033336	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	4.5	0.0	0.0	0.0	0.0	1.5
Merged-chr17-70849877-4	chr17	70849383	70850383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164076)	promoter-TSS (NM_001164076)	-93.0	NM_001164076	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	110.5	226.0	168.5	115.0	294.5	181.0
Merged-chr7-143052784-4	chr7	143052271	143053271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133655)	promoter-TSS (NM_133655)	21.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-137951971-1	chr3	137951471	137952471	+	1000.0	f0_balb.idr	intron (NM_011932, intron 3 of 8)	intron (NM_011932, intron 3 of 8)	29578.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140828335-2	chr5	140827835	140828835	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 1 of 3)	intron (NM_010302, intron 1 of 3)	2096.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8865053-4	chr12	8864565	8865565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-56242.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-8209212-4	chr6	8208721	8209721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145374)	promoter-TSS (NM_145374)	-6.0	NM_145374	252875.0	Mm.257151	NM_145374	ENSMUSG00000042447	Mios	C81488	meiosis regulator for oocyte development	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-122294544-4	chr9	122294039	122295039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133979)	promoter-TSS (NM_133979)	-116.0	NM_133979	102566.0	Mm.87676	NM_133979	ENSMUSG00000037949	Ano10	AI604832|Tmem16k	anoctamin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125224618-4	chr8	125224134	125225134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 10 of 12)	intron (NM_174854, intron 10 of 12)	170439.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	27.0	56.5	48.5	15.0	31.5	58.0
Merged-chr12-21336014-4	chr12	21335512	21336512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291871, intron 11 of 18)	intron (NM_001291871, intron 11 of 18)	19620.0	NM_026347	67732.0	Mm.335830	NM_026347	ENSMUSG00000062054	Iah1	1500019E20Rik|4833421E05Rik	isoamyl acetate-hydrolyzing esterase 1 homolog	protein-coding	15.5	59.0	50.5	55.0	104.0	89.0
Merged-chr19-8755542-2	chr19	8755042	8756042	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001167799)	TTS (NM_001167799)	1427.0	NR_132423	102640359.0	Mm.440831	NR_132423		1700023D09Rik	AV208457	RIKEN cDNA 1700023D09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135353265-4	chr4	135352766	135353766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130477)	promoter-TSS (NM_001130477)	-52.0	NM_001130477	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-81484962-4	chr12	81484476	81485476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132134)	promoter-TSS (NR_132134)	-125.0	NR_132134	66272.0	Mm.439970	NM_025461	ENSMUSG00000091803	Cox16	1810020G14Rik|1810055I05Rik|BB388670	cytochrome c oxidase assembly protein 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107285642-4	chr4	107285142	107286142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21526.0	NM_007860	13370.0	Mm.148342	NM_007860	ENSMUSG00000034785	Dio1	5DI|D1|ITDI1|TXDI1	deiodinase, iodothyronine, type I	protein-coding	3.0	0.5	6.0	3.0	0.5	6.5
Merged-chr4-6355537-4	chr4	6355063	6356063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-10117.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	39.5	56.0	59.0	30.0	52.0	47.5
Merged-chr8-86885295-4	chr8	86884792	86885792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030563)	promoter-TSS (NM_030563)	-34.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	15.0	40.0	46.0	13.5	50.0	42.5
Merged-chr6-29526631-4	chr6	29526118	29527118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012057)	promoter-TSS (NM_012057)	-7.0	NM_001311083	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-24503294-4	chr9	24502796	24503796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172920)	promoter-TSS (NM_172920)	-156.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66856105-3	chr9	66855608	66856608	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 3 of 7)	intron (NM_173413, intron 3 of 7)	-21402.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29173525-4	chr11	29173033	29174033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134034, intron 1 of 15)	intron (NM_134034, intron 1 of 15)	626.0	NM_134034	104570.0	Mm.276386	NM_134034	ENSMUSG00000020463	Ppp4r3b	AW011752|AW557776|Smek2|mKIAA1387	protein phosphatase 4 regulatory subunit 3B	protein-coding	27.0	34.0	17.0	23.5	47.0	20.0
Merged-chr5-109751846-4	chr5	109751346	109752346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82296.0	NR_027964	667213.0	Mm.454429	NR_027964	ENSMUSG00000105044	Gm10416	EG667213	zinc finger protein pseudogene	pseudo	12.5	17.0	29.5	78.0	65.0	91.5
Merged-chr13-17980189-2	chr13	17979689	17980689	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	13162.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3596632-4	chr5	3596138	3597138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172991)	promoter-TSS (NM_172991)	-91.0	NM_172991	269623.0	Mm.38014	NM_172991	ENSMUSG00000040302	Rbm48	AW548102|C030048B08Rik	RNA binding motif protein 48	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73908512-4	chr12	73907992	73908992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010431, intron 1 of 14)	CpG	625.0	NM_001313919	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84382206-4	chr2	84381699	84382699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018782, intron 2 of 15)	intron (NM_018782, intron 2 of 15)	43067.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	32.0	36.0	17.0	40.0	47.0	39.5
Merged-chr11-101078816-2	chr11	101078316	101079316	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010475, intron 2 of 5)	intron (NM_010475, intron 2 of 5)	405.0	NM_010475	15485.0	Mm.188939	NM_010475	ENSMUSG00000019301	Hsd17b1	17HSDB1|17beta-HSD|E2DH|Hsd17ba	hydroxysteroid (17-beta) dehydrogenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65294215-4	chr9	65293709	65294709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011802)	promoter-TSS (NM_011802)	-51.0	NM_011802	270166.0	Mm.30088	NM_011802	ENSMUSG00000015357	Clpx	AU014732|E330029I21	caseinolytic mitochondrial matrix peptidase chaperone subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84966154-4	chr8	84965651	84966651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027187)	promoter-TSS (NM_027187)	-140.0	NM_027187	69724.0	Mm.182470	NM_027187	ENSMUSG00000052926	Rnaseh2a	2400006P09Rik|RNASEHI|RNHIA|RNHL	ribonuclease H2, large subunit	protein-coding	30.0	53.5	41.0	5.5	17.5	27.5
Merged-chr9-107640358-4	chr9	107639886	107640886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5044.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	36.5	156.0	135.5	41.0	156.0	164.5
Merged-chr11-93886062-1	chr11	93885562	93886562	+	1000.0	f0_c57.idr	promoter-TSS (NM_134012)	promoter-TSS (NM_134012)	-145.0	NM_001346525	103537.0	Mm.210334	NM_134012	ENSMUSG00000059474	Mbtd1	AA408199|AI194990|hemp	mbt domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95950875-2	chr3	95950387	95951387	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	CpG	21630.0	NM_023210	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	82.0	194.0	193.5	110.0	200.0	185.5
Merged-chr2-181287667-5	chr2	181287203	181288203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198169, intron 1 of 9)	CpG	263.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76241471-4	chr16	76240986	76241986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	118873.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77793400-4	chr11	77792896	77793896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011586, intron 1 of 39)	intron (NM_011586, intron 1 of 39)	-7902.0	NM_001291214	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90272161-2	chr9	90271661	90272661	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1392.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	63.5	251.5	105.0	51.5	119.5	80.5
Merged-chr16-96192275-4	chr16	96191748	96192748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001492)	promoter-TSS (NM_001001492)	9.0	NM_001001492	385668.0	Mm.24626	NM_001001492	ENSMUSG00000045275	Lca5l	4921526F01Rik|Lcca5l	Leber congenital amaurosis 5-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35910142-4	chr17	35909649	35910649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142745)	promoter-TSS (NM_001142745)	-74.0	NM_001357865	73242.0	Mm.273155	NM_028476	ENSMUSG00000024426	Atat1	0610011P08Rik|2610008K08Rik|2610110G12Rik|3110080J08Rik|Mec17|TAT	alpha tubulin acetyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21642917-2	chr16	21642417	21643417	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 46 of 46)	intron (NM_001081366, intron 46 of 46)	51748.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115198991-4	chr11	115198424	115199424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033393, intron 3 of 9)	intron (NM_001033393, intron 3 of 9)	11437.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	95.0	254.0	158.0	47.5	103.5	56.0
Merged-chr8-121578882-4	chr8	121578411	121579411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133765)	promoter-TSS (NM_133765)	-105.0	NM_133765	76454.0	Mm.24829	NM_133765	ENSMUSG00000052934	Fbxo31	1110003O08Rik|2310046N15Rik|Fbx14|Fbxo14	F-box protein 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100428525-4	chr7	100428028	100429028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 20 of 32)	intron (NM_001017985, intron 20 of 32)	-44463.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91710465-4	chr2	91709960	91710960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178724)	promoter-TSS (NM_178724)	132.0	NM_145528	51897.0	Mm.28492	NM_145528	ENSMUSG00000027244	Atg13	1110053A20Rik|D2Ertd391e|Harbi1	autophagy related 13	protein-coding	143.0	344.0	241.5	137.5	333.0	226.0
Merged-chr1-152554014-2	chr1	152553514	152554514	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 6 of 17)	intron (NM_016846, intron 6 of 17)	71203.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-144004943-4	chr1	144004441	144005441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009061)	promoter-TSS (NM_009061)	-792.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-69723055-7	chr2	69722581	69723581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081086)	promoter-TSS (NM_001081086)	-7.0	NM_001081086	228005.0	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152293955-4	chr2	152293456	152294456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024196)	promoter-TSS (NM_024196)	84.0	NM_024196	67231.0	Mm.288733	NM_024196	ENSMUSG00000027465	Tbc1d20	1110028I04Rik|2810442O16Rik|AI414693|bs	TBC1 domain family, member 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66124787-4	chr7	66124299	66125299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081163, intron 1 of 2)	intron (NM_001081163, intron 1 of 2)	15284.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-128417214-7	chr1	128416684	128417684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177445, exon 1 of 16)	exon (NM_177445, exon 1 of 16)	232.0	NM_177445	226414.0	Mm.28693	NM_145507	ENSMUSG00000026356	Dars	5730439G15Rik	aspartyl-tRNA synthetase	protein-coding	24.5	90.0	76.5	19.0	59.5	78.5
Merged-chr19-56399243-2	chr19	56398743	56399743	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007611, intron 1 of 6)	intron (NM_007611, intron 1 of 6)	2114.0	NM_007611	12369.0	Mm.35687	NM_007611	ENSMUSG00000025076	Casp7	AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7	caspase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5726335-4	chr19	5725823	5726823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053252)	promoter-TSS (NM_053252)	-6.0	NM_053252	114601.0	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	19.5	52.0	21.0	14.5	70.0	25.5
Merged-chr2-160370673-2	chr2	160370173	160371173	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3608.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0.0	0.0	0.5	4.5	0.0	0.5
Merged-chr18-53250254-4	chr18	53249757	53250757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	4595.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	28.0	71.5	69.0	50.5	73.0	66.5
Merged-chr16-10482529-4	chr16	10482016	10483016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243760, intron 1 of 18)	intron (NM_001243760, intron 1 of 18)	2444.0	NM_001302618	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-53927685-1	chr10	53927185	53928185	+	1000.0	f0_balb.idr	intron (NM_008548, intron 8 of 12)	MTD|LTR|ERVL-MaLR	148111.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69099356-4	chr11	69098859	69099859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159367)	promoter-TSS (NM_001159367)	410.0	NM_011065	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123832474-4	chr5	123831998	123832998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33018.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	45.0	69.0	62.5	15.5	27.0	19.0
Merged-chr7-30559722-4	chr7	30559218	30560218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290569)	promoter-TSS (NM_001290569)	-72.0	NM_001290569	75660.0	Mm.379242	NM_029377	ENSMUSG00000036845	Lin37	1810054G18Rik	lin-37 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-68874646-4	chr2	68874136	68875136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	intron (NM_001347161, intron 1 of 10)	13195.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170129433-4	chr2	170128861	170129861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159683, intron 2 of 6)	intron (NM_001159683, intron 2 of 6)	1859.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-39655333-1	chr7	39654833	39655833	+	1000.0	f0_c57.idr	Intergenic	IAPLTR2_Mm|LTR|ERVK	137567.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	5.5	2.5	3.5	0.0	0.0	0.0
Merged-chr8-66490834-4	chr8	66490318	66491318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4288.0	NM_001357208	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113614784-4	chr13	113614279	113615279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	3785.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67243376-2	chr7	67242876	67243876	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291195, intron 8 of 10)	intron (NM_001291195, intron 8 of 10)	20760.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57166796-4	chr16	57166317	57167317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023175, intron 1 of 9)	intron (NM_023175, intron 1 of 9)	515.0	NM_023175	52633.0	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	4.5	5.0	0.0	3.0	10.5	3.0
Merged-chr15-59864897-4	chr15	59864397	59865397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	-69938.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	5.5	41.5	20.5	5.0	29.5	18.0
Merged-chr13-42329463-2	chr13	42328963	42329963	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27987.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57167319-4	chr16	57166765	57167765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023175)	promoter-TSS (NM_023175)	67.0	NM_023175	52633.0	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101020273-4	chr4	101019746	101020746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48792.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	4.0	12.5	8.5	4.0	6.5	8.0
Merged-chr17-46858025-2	chr17	46857525	46858525	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26612.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45048245-4	chr19	45047739	45048739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362381, intron 1 of 10)	intron (NM_001362381, intron 1 of 10)	663.0	NM_001362381	94280.0	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53217747-4	chr4	53217261	53218261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28435.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120473653-4	chr6	120473159	120474159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 3 of 12)	intron (NM_008359, intron 3 of 12)	10462.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	11.5	19.5	22.0	7.0	15.0	7.5
Merged-chr2-118598208-4	chr2	118597678	118598678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009773)	promoter-TSS (NM_009773)	-33.0	NM_009773	12236.0	Mm.29133	NM_009773	ENSMUSG00000040084	Bub1b	AU045529|BUBR1	BUB1B, mitotic checkpoint serine/threonine kinase	protein-coding	145.0	321.0	251.5	79.5	262.5	151.5
Merged-chr9-23669426-4	chr9	23668934	23669934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-428584.0	NM_175678	319239.0	Mm.130824	NM_175678	ENSMUSG00000043659	Npsr1	9330128H10Rik|GPRA|Gpr154|MVTR|PGR14|VRR1	neuropeptide S receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3928139-4	chr19	3927640	3928640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026316, intron 1 of 9)	intron (NM_026316, intron 1 of 9)	1576.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153120306-4	chr2	153119797	153120797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 1 of 12)	L1MA4|LINE|L1	11829.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24442482-4	chr7	24441962	24442962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199013, intron 1 of 2)	intron (NM_199013, intron 1 of 2)	3220.0	NM_199013	210145.0	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	3.5	18.0	12.5	0.5	7.0	8.0
Merged-chr19-6870192-2	chr19	6869692	6870692	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19-int|LTR|ERVK	-11981.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88603942-4	chr3	88603435	88604435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12272.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20886502-4	chr18	20885918	20886918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177038, intron 1 of 28)	MTEa|LTR|ERVL-MaLR	9660.0	NM_029491	75964.0	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145294030-2	chr7	145293530	145294530	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-6879.0	NM_145379	211577.0	Mm.215151	NM_145379	ENSMUSG00000031070	Mrgprf	BC019711|Mgrc|MrgF	MAS-related GPR, member F	protein-coding	28.0	28.0	23.5	15.0	52.5	30.5
Merged-chr17-80483083-4	chr17	80482570	80483570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2617.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-157016781-4	chr1	157016278	157017278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-77152.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	33.5	87.0	53.0	58.5	113.0	78.5
Merged-chr9-44317863-1	chr9	44317363	44318363	+	1000.0	f1_balb.idr	intron (NM_001359259, intron 1 of 13)	intron (NM_001359259, intron 1 of 13)	2419.0	NM_001359259	71764.0	Mm.491174	NM_027909	ENSMUSG00000032120	C2cd2l	1300006O23Rik|Tmem24	C2 calcium-dependent domain containing 2-like	protein-coding	22.5	32.0	20.0	9.5	29.0	21.0
Merged-chr8-126945911-4	chr8	126945401	126946401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024214)	promoter-TSS (NM_024214)	20.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77267209-4	chr10	77266712	77267712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030262, exon 8 of 9)	exon (NM_030262, exon 8 of 9)	7912.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71125663-4	chr17	71125162	71126162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083934, intron 36 of 36)	intron (NM_001083934, intron 36 of 36)	-57870.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105171222-4	chr1	105170725	105171725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-184782.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24859649-2	chr16	24859149	24860149	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 9 of 12)	intron (NM_178665, intron 9 of 12)	137794.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	13.5	0.5	0.0	13.5	0.5	0.0
Merged-chr9-118645388-2	chr9	118644888	118645888	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	38679.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-53742245-3	chr1	53741754	53742754	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35470.0	NM_001252070	627872.0	Mm.184692	NM_001252070	ENSMUSG00000096141	Dnah7a	Dnahc7|Dnahc7a|Gm992	dynein, axonemal, heavy chain 7A	protein-coding	43.5	58.5	52.5	7.0	6.5	13.5
Merged-chr11-95310905-2	chr11	95310405	95311405	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195004)	promoter-TSS (NM_001195004)	489.0	NR_155298	102640811.0	Mm.440938	NR_155298		Gm11520	-	predicted gene 11520	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113590390-4	chr13	113589925	113590925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28139.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117475154-4	chr8	117474654	117475654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15889.0	NR_106046	102465653.0		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-122836252-4	chr4	122835752	122836752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008917)	promoter-TSS (NM_008917)	25.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68238944-4	chr10	68238433	68239433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 3 of 9)	intron (NM_023598, intron 3 of 9)	39793.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	165.5	300.5	225.5	107.0	282.5	175.0
Merged-chr10-85354535-3	chr10	85354042	85355042	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32272.0	NM_028709	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	7.0	16.0	12.5	9.0	5.5	1.0
Merged-chr3-87508440-4	chr3	87507922	87508922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17156.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	2.5	20.5	3.5	10.0	7.5	11.0
Merged-chr11-17211559-4	chr11	17211063	17212063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178909)	promoter-TSS (NM_178909)	26.0	NM_025443	66249.0	Mm.27831	NM_025443	ENSMUSG00000020116	Pno1	1810003N24Rik|AA407421|AU015468|AU019495|AU042323|Emi3|Imi3	partner of NOB1 homolog	protein-coding	67.0	178.0	108.5	56.0	232.0	185.0
Merged-chr17-5626511-4	chr17	5626010	5627010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	133910.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138322855-4	chr1	138322369	138323369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49131.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83697539-4	chr8	83697034	83698034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177262, intron 1 of 21)	intron (NM_177262, intron 1 of 21)	1645.0	NM_177262	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	66.5	116.0	90.5	32.0	131.0	92.5
Merged-chr2-152115597-4	chr2	152115096	152116096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10072.0	NM_029688	76650.0	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87591982-4	chr11	87591461	87592461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357901)	promoter-TSS (NM_001357901)	-205.0	NM_001357901	170749.0	Mm.399376	NM_133215	ENSMUSG00000018401	Mtmr4	AA596759|ESTM44|FYVE-DSP2|ZFYVE11|mKIAA0647	myotubularin related protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25659168-4	chr7	25658683	25659683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138586)	promoter-TSS (NM_138586)	30.0	NR_104358	27998.0	Mm.27853	NM_138586	ENSMUSG00000061286	Exosc5	D7Wsu180e	exosome component 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108517308-7	chr9	108516824	108517824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175143, intron 1 of 9)	CpG	237.0	NM_175143	69232.0	Mm.335449	NM_175143	ENSMUSG00000006673	Qrich1	2610028H07Rik|b2b2404Clo	glutamine-rich 1	protein-coding	40.0	124.5	124.5	44.5	110.5	116.0
Merged-chr4-123718276-4	chr4	123717794	123718794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002445).2	promoter-TSS (NR_002445).2	-108.0	NM_001030274	595136.0	Mm.42805	NM_001030274	ENSMUSG00000028648	Ndufs5	AI256693	NADH dehydrogenase (ubiquinone) Fe-S protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79028436-4	chr15	79027927	79028927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008197, exon 1 of 1)	5' UTR (NM_008197, exon 1 of 1)	215.0	NM_008197	14958.0	Mm.24350	NM_008197	ENSMUSG00000096210	H1f0	D130017D06Rik|H1(0)|H1fv	H1 histone family, member 0	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91372948-8	chr16	91372474	91373474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001110498, exon 1 of 7)	5' UTR (NM_001110498, exon 1 of 7)	191.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-121462107-4	chr1	121461609	121462609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029955, intron 9 of 23)	intron (NM_029955, intron 9 of 23)	31042.0	NM_029955	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	23.5	57.5	45.5	14.5	23.0	20.5
Merged-chr3-69669353-1	chr3	69668853	69669853	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-52702.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	9.5	24.0	17.5	3.0	8.0	16.0
Merged-chr9-62980888-4	chr9	62980323	62981323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019663)	promoter-TSS (NM_019663)	56.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30155142-4	chr5	30154637	30155637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178878)	promoter-TSS (NM_178878)	-116.0	NM_145558	231086.0	Mm.291463	NM_145558	ENSMUSG00000059447	Hadhb	4930479F15Rik|Mtpb|TP-beta	hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-15920596-2	chr7	15920139	15921139	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009156, intron 1 of 5)	intron (NM_009156, intron 1 of 5)	1732.0	NM_009156	20364.0	Mm.42829	NM_009156	ENSMUSG00000041571	Selenow	Sepw1|selW	selenoprotein W	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90522107-4	chr2	90521596	90522596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	MIRb|SINE|MIR	-42922.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	9.5	15.5	14.0	11.5	25.5	21.5
Merged-chr8-70673670-4	chr8	70673166	70674166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015816, intron 1 of 4)	CpG	435.0	NM_015816	50783.0	Mm.248188	NM_015816	ENSMUSG00000031848	Lsm4	-	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	117.0	270.5	228.0	108.0	267.0	194.5
Merged-chr1-105922043-4	chr1	105921545	105922545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	68237.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74332487-4	chr1	74331992	74332992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019999)	promoter-TSS (NM_019999)	-118.0	NM_019999	56695.0	Mm.384726	NM_019999	ENSMUSG00000026179	Pnkd	2210013N15Rik|2810403H05Rik|AI854243|Brp17|MNCb-5687|MR-1|Tahccp2	paroxysmal nonkinesiogenic dyskinesia	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88276452-2	chr7	88275952	88276952	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1633.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120762973-4	chr14	120762481	120763481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-148213.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-103197535-1	chr4	103197035	103198035	+	1000.0	f0_balb.idr	intron (NM_001356276, intron 8 of 11)	intron (NM_001356276, intron 8 of 11)	17641.0	NM_001356276	242585.0	Mm.281800	NM_177732	ENSMUSG00000028521	Slc35d1	AI834976|C330011J09|UGTREL7|mKIAA0260	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-145729769-4	chr3	145729294	145730294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28898.0	NM_026993	69219.0	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20836773-4	chr14	20836279	20837279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008873, intron 1 of 10)	intron (NM_008873, intron 1 of 10)	117.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	67.0	164.0	124.5	108.0	172.0	151.5
Merged-chr8-72492790-4	chr8	72492302	72493302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177766)	promoter-TSS (NM_177766)	-188.0	NM_177766	270066.0	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	33.5	179.5	121.0	35.0	134.0	59.5
Merged-chr15-73068244-4	chr15	73067766	73068766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7062.0	NM_001164643	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	0.5	9.5	12.0	4.5	2.0	14.5
Merged-chr16-10988792-2	chr16	10988292	10989292	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	4329.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120822826-4	chr6	120822323	120823323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007510)	promoter-TSS (NM_007510)	-125.0	NM_007510	11973.0	Mm.29045	NM_007510	ENSMUSG00000019210	Atp6v1e1	2410029D23Rik|Atp6e|Atp6e2|Atp6v1e|D6Ertd385e|Vma4|p31	ATPase, H+ transporting, lysosomal V1 subunit E1	protein-coding	9.0	22.5	17.0	13.5	46.0	33.5
Merged-chr6-34384255-4	chr6	34383765	34384765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172398)	promoter-TSS (NM_172398)	18.0	NR_149754	67861.0	Mm.70371	NM_172398	ENSMUSG00000061758	Akr1b10	2310005E10Rik|Akr1b16	aldo-keto reductase family 1, member B10 (aldose reductase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51606912-4	chr11	51606413	51607413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010448)	promoter-TSS (NM_010448)	-32.0	NM_010448	15384.0	Mm.256875	NM_010448	ENSMUSG00000020358	Hnrnpab	3010025C11Rik|CBF-A|Cgbfa|Hnrpab	heterogeneous nuclear ribonucleoprotein A/B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20388930-4	chr14	20388419	20389419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134081)	promoter-TSS (NM_134081)	-9.0	NM_134081	108671.0	Mm.2871	NM_134081	ENSMUSG00000021811	Dnajc9	5330419I01Rik|AU020082	DnaJ heat shock protein family (Hsp40) member C9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48247690-4	chr17	48247186	48248186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021407)	promoter-TSS (NM_021407)	-43.0	NM_021407	58218.0	Mm.302438	NM_021407	ENSMUSG00000041754	Trem3	BB134760	triggering receptor expressed on myeloid cells 3	protein-coding	2.0	4.5	3.0	6.5	4.0	2.0
Merged-chr3-88536772-4	chr3	88536265	88537265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035434)	promoter-TSS (NR_035434)	-383.0	NR_035434	100316808.0		NR_035434	ENSMUSG00000084728	Mir1905	Mirn1905|mmu-mir-1905	microRNA 1905	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-85553312-4	chr13	85552813	85553813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-263827.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	5.5	9.0	15.0	1.5	5.0	17.0
Merged-chr8-84212447-2	chr8	84211947	84212947	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172503, exon 14 of 14)	exon (NM_172503, exon 14 of 14)	-3540.0	NR_037294	100526528.0		NR_037294	ENSMUSG00000105458	Mir3074-2	mir-3074-2|mmu-mir-3074-2	microRNA 3074-2	ncRNA	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr16-97962739-4	chr16	97962267	97963267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081684)	promoter-TSS (NM_001081684)	-145.0	NM_001320385	114565.0	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66059419-2	chr9	66058919	66059919	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011149)	promoter-TSS (NM_011149)	-750.0	NM_011149	19035.0	Mm.335249	NM_011149	ENSMUSG00000032383	Ppib	AA408962|AA553318|AI844835|Cphn-2|Cphn2|CyP-20b	peptidylprolyl isomerase B	protein-coding	2.0	0.0	0.0	5.5	2.0	1.0
Merged-chr7-16313648-1	chr7	16313148	16314148	+	1000.0	f0_c57.idr	exon (NM_133234, exon 3 of 4)	exon (NM_133234, exon 3 of 4)	4065.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75179460-4	chr14	75178956	75179956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	43031.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-97190573-4	chr13	97190073	97191073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010422, intron 3 of 13)	LSU-rRNA_Hsa|rRNA|rRNA	7784.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5787248-4	chr19	5786778	5787778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	8703.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6369179-4	chr4	6368677	6369677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	3497.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	39.5	100.5	60.0	19.5	53.5	29.0
Merged-chr9-86571882-4	chr9	86571351	86572351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145969)	promoter-TSS (NM_001145969)	-9.0	NM_028352	109785.0	Mm.390201	NM_028352	ENSMUSG00000056131	Pgm3	2810473H05Rik|Agm1|BB187688|C77933|PAGM|Pgm-3	phosphoglucomutase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-41240471-2	chr8	41239986	41240986	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023662, intron 1 of 37)	intron (NM_023662, intron 1 of 37)	727.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	82.5	187.0	150.0	46.0	108.0	66.0
Merged-chr7-25385854-4	chr7	25385339	25386339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_073028)	TTS (NR_073028)	4273.0	NM_001039507	16890.0	Mm.158548	NM_010719	ENSMUSG00000003123	Lipe	4933403G17Rik|HSL	lipase, hormone sensitive	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54383478-4	chr14	54382960	54383960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	22619.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	194.0	285.0	328.0	162.0	370.0	292.5
Merged-chr13-95942059-4	chr13	95941550	95942550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR73|LTR|ERV1	-50128.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	3.0	32.5	32.5	10.5	1.5	8.5
Merged-chr4-35994190-4	chr4	35993675	35994675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166000, intron 7 of 8)	MERVL_2A-int|LTR|ERVL	-148971.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21546232-4	chr9	21545738	21546738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021531)	promoter-TSS (NM_021531)	-656.0	NM_021531	59035.0	Mm.178115	NM_021531	ENSMUSG00000032185	Carm1	Prmt4	coactivator-associated arginine methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45608499-4	chr14	45608010	45609010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176845, intron 8 of 12)	intron (NM_176845, intron 8 of 12)	49543.0	NR_039593	100628600.0		NR_039593	ENSMUSG00000093167	Mir5131	mmu-mir-5131|mu-mir-5131	microRNA 5131	ncRNA	17.5	42.0	28.5	2.0	25.0	15.0
Merged-chr11-60417169-4	chr11	60416686	60417686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145427)	promoter-TSS (NM_145427)	41.0	NM_025757	66771.0	Mm.29950	NM_025757	ENSMUSG00000018415	Gid4	4933439F18Rik	GID complex subunit 4, VID24 homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-105288732-4	chr14	105288241	105289241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029561, intron 2 of 7)	intron (NM_029561, intron 2 of 7)	30068.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	3.0	2.0	5.5	2.5	8.5	0.0
Merged-chr6-128839660-4	chr6	128839155	128840155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13340.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	15.5	78.0	41.5	20.5	90.0	62.5
Merged-chr12-59216888-4	chr12	59216396	59217396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033156, intron 1 of 3)	intron (NM_001033156, intron 1 of 3)	2587.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11558878-4	chr11	11558378	11559378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68960.0	NM_001305143	102631730.0	Mm.159430	NM_001305143	ENSMUSG00000062511	4930512M02Rik	-	RIKEN cDNA 4930512M02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-38528003-4	chr13	38527524	38528524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289599)	promoter-TSS (NM_001289599)	-110.0	NM_001289599	105245.0	Mm.28622	NM_145367	ENSMUSG00000038991	Txndc5	AL022641|ERp46|PC-TRP	thioredoxin domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25604243-2	chr14	25603743	25604743	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001309430, exon 1 of 1)	3' UTR (NM_001309430, exon 1 of 1)	730.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119478047-4	chr2	119477634	119478634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026574)	promoter-TSS (NM_026574)	-505.0	NM_026574	68142.0	Mm.330496	NM_026574	ENSMUSG00000034154	Ino80	2310079N15Rik|4632409L19Rik|Inoc1	INO80 complex subunit	protein-coding	41.5	130.5	140.0	61.5	157.5	119.0
Merged-chr12-55572352-4	chr12	55571850	55572850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7145.0	NM_001277340	79459.0	Mm.392781	NM_001277340	ENSMUSG00000063129	Aldoart2	4933425L11Rik|Aldo1-ps1|Aldoa-ps1	aldolase 1 A, retrogene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135272155-5	chr4	135271624	135272624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	636.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127787322-4	chr3	127786872	127787872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-2500.0	NM_145133	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	19.5	53.0	29.5	26.5	85.0	24.5
Merged-chr2-167771764-4	chr2	167771266	167772266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80589.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105851962-4	chr8	105851410	105852410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177150)	promoter-TSS (NM_177150)	98.0	NM_177150	320394.0	Mm.334775	NM_177150	ENSMUSG00000036672	Cenpt	G630055P03Rik	centromere protein T	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82910941-3	chr18	82910444	82911444	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183033)	promoter-TSS (NM_183033)	65.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141022293-4	chr7	141021805	141022805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-5413.0	NM_001033632	213002.0	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5802400-4	chr13	5801864	5802864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55728.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-22759799-4	chr14	22759281	22760281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-216983.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46002454-4	chr19	46001956	46002956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152221, intron 1 of 1)	ORR1C2|LTR|ERVL-MaLR	-1022.0	NM_176785	20170.0	Mm.101110	NM_176785	ENSMUSG00000074811	Hps6	5330434M19Rik|BLOC2|ru	HPS6, biogenesis of lysosomal organelles complex 2 subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-105291995-4	chr13	105291486	105292486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360891, intron 1 of 7)	MMVL30-int|LTR|ERV1	1028.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30474277-4	chr2	30473779	30474779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030244)	promoter-TSS (NM_030244)	-80.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-33660748-4	chr8	33660235	33661235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010344, intron 1 of 12)	intron (NM_010344, intron 1 of 12)	7497.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	152.0	247.5	178.0	51.5	36.5	42.0
Merged-chr8-34158405-4	chr8	34157910	34158910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026432, intron 1 of 5)	intron (NM_026432, intron 1 of 5)	3847.0	NM_026432	67887.0	Mm.290353	NM_026432	ENSMUSG00000031532	Saraf	1810045K07Rik|Tmem66	store-operated calcium entry-associated regulatory factor	protein-coding	19.5	97.0	75.0	16.5	57.0	41.5
Merged-chr2-27028048-4	chr2	27027531	27028531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172659)	promoter-TSS (NM_172659)	-33.0	NM_001177627	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38371868-4	chr15	38371379	38372379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71168.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6415773-4	chr11	6415281	6416281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008907)	promoter-TSS (NM_008907)	-89.0	NM_008907	268373.0	Mm.5246	NM_008907	ENSMUSG00000071866	Ppia	2700098C05|Cphn|CyP-18|CypA	peptidylprolyl isomerase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78105665-4	chr10	78105170	78106170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	36302.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119981820-8	chr9	119981292	119982292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153287, intron 1 of 4)	intron (NM_153287, intron 1 of 4)	1231.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106437876-4	chr9	106437365	106438365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025371, intron 1 of 14)	MIRb|SINE|MIR	371.0	NM_001276442	109652.0	Mm.7165	NM_025371	ENSMUSG00000023262	Acy1	1110014J22Rik|Acy-1	aminoacylase 1	protein-coding	21.0	72.5	46.0	30.0	76.0	64.5
Merged-chr13-3610612-2	chr13	3610112	3611112	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360838, intron 1 of 19)	CpG	496.0	NM_134063	105203.0	Mm.221609	NM_134063	ENSMUSG00000033799	Fam208b	AI645998|Pap20|mKIAA2006	family with sequence similarity 208, member B	protein-coding	26.0	99.0	61.0	14.0	129.0	35.5
Merged-chr7-25755097-8	chr7	25754604	25755604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360789)	promoter-TSS (NM_001360789)	-345.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63745302-4	chr4	63744815	63745815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177371)	promoter-TSS (NM_177371)	-202.0	NM_177371	326623.0	Mm.208152	NM_177371	ENSMUSG00000050395	Tnfsf15	Tl1|Tl1a|Tnlg1b|Vegi	tumor necrosis factor (ligand) superfamily, member 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-46831447-4	chr7	46830968	46831968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14336.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58549089-4	chr9	58548588	58549588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8148.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	0.0	0.5	4.0	1.0	0.0	1.0
Merged-chr12-24651868-4	chr12	24651356	24652356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178357, intron 1 of 3)	CpG	485.0	NM_178357	194655.0	Mm.9616	NM_178357	ENSMUSG00000020653	Klf11	9830142A17|D12Ertd427e|Tieg2|Tieg2b|Tieg3	Kruppel-like factor 11	protein-coding	85.0	251.5	128.5	65.0	159.0	224.0
Merged-chr7-101537766-4	chr7	101537252	101538252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18050.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	44.0	91.5	54.5	33.5	91.5	77.5
Merged-chr2-25272444-4	chr2	25271942	25272942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023464)	promoter-TSS (NM_023464)	-24.0	NM_023464	68475.0	Mm.21444	NM_023464	ENSMUSG00000026966	Ssna1	1110003H09Rik|1190004J23Rik|AA934184|N14|NA14	SS nuclear autoantigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20952585-4	chr10	20952086	20953086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026203)	promoter-TSS (NM_026203)	39.0	NM_001358561	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-90322423-2	chr18	90321923	90322923	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-187731.0	NM_198295	67988.0	Mm.268041	NM_198295	ENSMUSG00000024614	Tmx3	6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830	thioredoxin-related transmembrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-75956283-4	chr3	75955781	75956781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175193, exon 1 of 15)	exon (NM_175193, exon 1 of 15)	668.0	NM_175193	73124.0	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-24419492-4	chr8	24418967	24419967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19479.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-49172589-4	chr14	49172098	49173098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027492, intron 1 of 4)	CpG	352.0	NM_027492	70646.0	Mm.275688	NM_027492	ENSMUSG00000036282	Naa30	4930487N19Rik|5730533P17Rik|AI447922|AW322455|Nat12	N(alpha)-acetyltransferase 30, NatC catalytic subunit	protein-coding	7.0	12.5	16.5	4.0	3.0	12.0
Merged-chr2-144270655-4	chr2	144270159	144271159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289630)	promoter-TSS (NM_001289630)	-87.0	NM_024225	69178.0	Mm.273379	NM_024225	ENSMUSG00000027423	Snx5	0910001N05Rik|1810032P22Rik|AU019504|D2Ertd52e	sorting nexin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-105737365-4	chr7	105736833	105737833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025897)	promoter-TSS (NM_025897)	52.0	NM_133951	101867.0	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124440223-1	chr5	124439723	124440723	+	1000.0	f0_c57.idr	intron (NM_001310725, intron 1 of 6)	CpG	293.0	NM_001310725	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-101175314-4	chr2	101174812	101175812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-449436.0	NM_009020	19374.0	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121719509-2	chr9	121719009	121720009	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010918, exon 2 of 17)	exon (NM_010918, exon 2 of 17)	328.0	NM_010918	18087.0	Mm.32842	NM_010918	ENSMUSG00000032525	Nktr	5330401F18Rik|D9Wsu172e	natural killer tumor recognition sequence	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35106780-3	chr7	35106283	35107283	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEb|LINE|L1	-12510.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	3.0	3.5	1.0	0.0	6.0	11.5
Merged-chr1-92216894-4	chr1	92216406	92217406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36565.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	36.0	82.5	41.0	26.0	91.5	52.5
Merged-chr3-54719150-4	chr3	54718643	54719643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358017, intron 20 of 24)	intron (NM_001358017, intron 20 of 24)	16221.0	NM_027148	69639.0	Mm.29253	NM_027148	ENSMUSG00000027752	Exosc8	2310032N20Rik|CIP3|mKIAA4013	exosome component 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80142300-4	chr10	80141785	80142785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025313)	promoter-TSS (NM_025313)	10.0	NM_001347092	66043.0	Mm.278560	NM_025313	ENSMUSG00000003072	Atp5d	0610008F14Rik|1500000I11Rik|AA960090|AI876556|AU020773|Atp5f1d|C85518	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88270716-4	chr7	88270218	88271218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7367.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-179668216-4	chr1	179667736	179668736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178653)	promoter-TSS (NM_178653)	5.0	NM_178653	109232.0	Mm.136458	NM_178653	ENSMUSG00000038936	Sccpdh	AW214504|C330023F11Rik	saccharopine dehydrogenase (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45262140-4	chr2	45261624	45262624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-144682.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25181633-4	chr7	25181138	25182138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26569.0	NR_045848	434147.0	Mm.59171	NM_001033781	ENSMUSG00000074274	D930028M14Rik	EG434147	RIKEN cDNA D930028M14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122281484-4	chr8	122280994	122281994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009569)	promoter-TSS (NM_009569)	-647.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	45.0	181.0	111.5	31.0	96.0	74.5
Merged-chr7-105554347-4	chr7	105553842	105554842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011421)	promoter-TSS (NM_011421)	-18.0	NM_011421	20597.0	Mm.4628	NM_011421	ENSMUSG00000037049	Smpd1	A-SMase|ASM|Zn-SMase|aSMase	sphingomyelin phosphodiesterase 1, acid lysosomal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90528302-4	chr2	90527794	90528794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-49120.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	68.0	137.0	82.0	57.5	145.0	43.0
Merged-chr2-59343013-4	chr2	59342508	59343508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 16 of 20)	intron (NM_175464, intron 16 of 20)	43674.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-31051657-2	chr7	31051160	31052160	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022007)	promoter-TSS (NM_022007)	-206.0	NM_022007	57780.0	Mm.41770	NM_022007	ENSMUSG00000036578	Fxyd7	1110035I01Rik	FXYD domain-containing ion transport regulator 7	protein-coding	0.0	0.0	0.5	8.5	1.5	0.0
Merged-chr9-63132941-4	chr9	63132409	63133409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14071.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102990336-2	chr11	102989836	102990836	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	9585.0	NR_105896	102466988.0		NR_105896	ENSMUSG00000098613	Mir6931	Gm27303|mmu-mir-6931	microRNA 6931	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-89980537-4	chr7	89980044	89981044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021876, exon 1 of 12)	5' UTR (NM_021876, exon 1 of 12)	432.0	NM_021876	13626.0	Mm.380914	NM_021876	ENSMUSG00000030619	Eed	l(7)5Rn|l7Rn5|lusk	embryonic ectoderm development	protein-coding	66.5	210.0	125.0	80.5	166.0	150.5
Merged-chr4-88865392-4	chr4	88864896	88865896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14805.0	NM_177348	230405.0	Mm.246593	NM_177348	ENSMUSG00000045364	Ifne	Ifn-tau-1|Ifne1|Ifnt1|Infe1	interferon epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100875927-4	chr7	100875428	100876428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081116, intron 20 of 20)	intron (NM_001081116, intron 20 of 20)	6481.0	NR_037289	100526508.0		NR_037289	ENSMUSG00000093296	Mir3102	mmu-mir-3102	microRNA 3102	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118901862-2	chr2	118901362	118902362	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045523, intron 1 of 6)	CpG	247.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8912183-1	chr4	8911683	8912683	+	1000.0	f0_c57.idr	Intergenic	Intergenic	160859.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	48.5	144.5	67.5	61.0	150.5	67.5
Merged-chr3-94974661-4	chr3	94974176	94975176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293716)	promoter-TSS (NM_001293716)	-55.0	NM_001293715	107650.0	Mm.217222	NM_175356	ENSMUSG00000038861	Pi4kb	ESTM41|PI4K-beta|PI4Kbeta|Pik4cb	phosphatidylinositol 4-kinase beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29986451-4	chr11	29985954	29986954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 2 of 41)	RLTR20C|LTR|ERVK	39579.0	NM_146016	237711.0	Mm.445271	NM_146016	ENSMUSG00000044072	Eml6	2900083P10Rik|C230094A16Rik|EMAP-6	echinoderm microtubule associated protein like 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53032631-2	chr4	53032131	53033131	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013454, exon 50 of 50)	3' UTR (NM_013454, exon 50 of 50)	20751.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75137277-4	chr11	75136775	75137775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 13 of 18)	intron (NM_001002764, intron 13 of 18)	30877.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8848365-4	chr10	8847868	8848868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	37702.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	18.0	91.0	72.0	12.0	75.0	39.5
Merged-chr11-75630884-4	chr11	75630392	75631392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008916)	promoter-TSS (NM_008916)	-128.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-119893176-4	chr1	119892686	119893686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER30|DNA|hAT-Charlie	19982.0	NM_175106	66343.0	Mm.49942	NM_175106	ENSMUSG00000036975	Tmem177	2300008B03Rik	transmembrane protein 177	protein-coding	0.0	6.0	0.0	0.5	4.5	0.0
Merged-chr6-108307424-4	chr6	108306908	108307908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 4 of 61)	intron (NM_010585, intron 4 of 61)	94312.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30873701-4	chr16	30873199	30874199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	207733.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108911045-4	chr8	108910557	108911557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 4 of 9)	intron (NM_007496, intron 4 of 9)	-25803.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	15.5	32.0	29.5	26.0	27.5	26.0
Merged-chr4-16082373-4	chr4	16081902	16082902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-68514.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101078360-2	chr15	101077860	101078860	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-23961.0	NM_001214911	668225.0	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	8.5	6.0	4.5	3.5	11.5	4.5
Merged-chr11-94385848-2	chr11	94385348	94386348	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	7128.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	7.0	18.0	36.5	22.0	43.0	35.5
Merged-chr12-54656630-4	chr12	54656112	54657112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134054)	promoter-TSS (NM_134054)	-40.0	NM_134054	104725.0	Mm.485026	NM_134054	ENSMUSG00000044408	Sptssa	1110002B05Rik|AA407909|AA409588|AU041967|Ssspta	serine palmitoyltransferase, small subunit A	protein-coding	18.0	58.0	28.0	25.5	47.5	28.0
Merged-chr10-53928104-4	chr10	53927618	53928618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 8 of 12)	intron (NM_008548, intron 8 of 12)	147678.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110608966-4	chr12	110608497	110609497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030238, intron 1 of 76)	intron (NM_030238, intron 1 of 76)	7602.0	NM_030238	13424.0	Mm.181430	NM_030238	ENSMUSG00000018707	Dync1h1	9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325	dynein cytoplasmic 1 heavy chain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-103897800-4	chr13	103897296	103898296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005868, intron 1 of 26)	intron (NM_001005868, intron 1 of 26)	22790.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117872341-4	chr5	117871858	117872858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 1 of 27)	intron (NM_008712, intron 1 of 27)	5519.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7020880-2	chr19	7020380	7021380	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016737, exon 14 of 14)	3' UTR (NM_016737, exon 14 of 14)	-1411.0	NM_001362399	108101.0	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32607846-4	chr2	32607349	32608349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025310, intron 1 of 5)	intron (NM_001025310, intron 1 of 5)	864.0	NR_110347	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37236696-2	chr10	37236196	37237196	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97770.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80673562-2	chr10	80673062	80674062	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021462, intron 2 of 13)	intron (NM_021462, intron 2 of 13)	2731.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0.5	0.0	1.5	0.0	0.0	6.5
Merged-chr2-164458539-4	chr2	164458039	164459039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-2432.0	NM_025575	66460.0	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-179546308-4	chr1	179545766	179546766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146105)	promoter-TSS (NM_146105)	10.0	NM_001331054	15278.0	Mm.293529	NM_008249	ENSMUSG00000026492	Tfb2m	Hkp1	transcription factor B2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-115817269-1	chr10	115816769	115817769	+	1000.0	f1_balb.idr	promoter-TSS (NM_146010)	promoter-TSS (NM_146010)	-15.0	NM_001168680	216350.0	Mm.22270	NM_146010	ENSMUSG00000034127	Tspan8	C76990|E330007O21Rik|Tm4sf3	tetraspanin 8	protein-coding	16.0	8.0	4.5	9.5	10.5	5.0
Merged-chr3-146177931-4	chr3	146177453	146178453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 7 of 13)	intron (NM_001005846, intron 7 of 13)	27779.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	0.0	0.0	1.0	1.5	1.0	2.5
Merged-chr5-30814614-4	chr5	30814115	30815115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133350)	promoter-TSS (NM_133350)	-26.0	NM_133350	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-17257608-4	chr11	17257092	17258092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330649)	promoter-TSS (NM_001330649)	45.0	NM_020558	57316.0	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84023272-4	chr12	84022781	84023781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	13779.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115555654-4	chr8	115555151	115556151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	151243.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61132161-4	chr18	61131646	61132646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178277, exon 20 of 20)	exon (NM_178277, exon 20 of 20)	14678.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14824655-3	chr8	14824159	14825159	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 11 of 15)	intron (NM_172910, intron 11 of 15)	-63877.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	11.5	7.5	14.0	1.0	0.0	1.0
Merged-chr9-57074419-2	chr9	57073919	57074919	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_152107)	TTS (NR_152107)	1630.0	NR_152107	72588.0	Mm.70350	NR_152107		2700012I20Rik	-	RIKEN cDNA 2700012I20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80326150-4	chr12	80325658	80326658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65519.0	NR_037207	100526530.0		NR_037207	ENSMUSG00000105972	Mir1843a	Mir1843|mir-1843a|mmu-mir-1843|mmu-mir-1843a	microRNA 1843a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-60941446-4	chr1	60940947	60941947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32422.0	NM_001281976	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115631675-4	chr11	115631182	115632182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3387.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75288774-4	chr10	75288265	75289265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153406, intron 13 of 15)	intron (NM_153406, intron 13 of 15)	-28112.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-59604305-4	chr16	59603785	59604785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32660.0	NR_040564	75145.0	Mm.399348	NR_040564		4930547E14Rik	-	RIKEN cDNA 4930547E14 gene	ncRNA	0.5	13.5	6.0	4.5	13.5	11.0
Merged-chr17-75119652-4	chr17	75119147	75120147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019919, intron 3 of 33)	intron (NM_019919, intron 3 of 33)	-59134.0	NM_001331236	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5006772-4	chr6	5006254	5007254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	103434.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111670516-2	chr12	111670016	111671016	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021273, intron 5 of 7)	intron (NM_021273, intron 5 of 7)	1822.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55840967-4	chr19	55840468	55841468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-54353.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144267088-2	chr2	144266588	144267588	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030762)	promoter-TSS (NR_030762)	-886.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40036694-3	chr12	40036187	40037187	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007487, exon 2 of 2)	exon (NM_007487, exon 2 of 2)	689.0	NM_007487	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46338713-4	chr19	46338189	46339189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164295)	promoter-TSS (NM_001164295)	-29.0	NM_001164292	67116.0	Mm.218848	NM_024192	ENSMUSG00000036748	Cuedc2	3010002G01Rik	CUE domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6555735-4	chr15	6555218	6556218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24129.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76709128-2	chr15	76708628	76709628	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_058214, exon 5 of 22)	exon (NM_058214, exon 5 of 22)	1431.0	NM_058214	79456.0	Mm.18373	NM_058214	ENSMUSG00000033762	Recql4	RecQ4	RecQ protein-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34586966-2	chr17	34586466	34587466	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010929, intron 28 of 29)	CpG	-2840.0	NM_134116	106512.0	Mm.26584	NM_134116	ENSMUSG00000034786	Gpsm3	AA960287|AGS4	G-protein signalling modulator 3 (AGS3-like, C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103115555-4	chr14	103115067	103116067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207215, intron 84 of 84)	intron (NM_207215, intron 84 of 84)	-16001.0	NM_001360342	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-76588715-4	chr5	76588185	76589185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3029.0	NM_199032	381644.0	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66310814-4	chr7	66310328	66311328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 6 of 33)	MTC|LTR|ERVL-MaLR	70896.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-7945866-4	chr17	7945347	7946347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025789, exon 1 of 8)	exon (NM_025789, exon 1 of 8)	233.0	NM_025789	66832.0	Mm.29830	NM_025789	ENSMUSG00000073471	Rsph3a	1700012G05Rik|4930524H12Rik|R74860|Rshl2|Rshl2a	radial spoke 3A homolog (Chlamydomonas)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121995003-4	chr14	121994516	121995516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 7 of 8)	intron (NM_026861, intron 7 of 8)	-29823.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	41.5	144.0	113.0	55.5	94.5	56.5
Merged-chr2-181278043-4	chr2	181277540	181278540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198169, exon 2 of 10)	exon (NM_198169, exon 2 of 10)	9926.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114648774-4	chr6	114648286	114649286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 2 of 19)	intron (NM_001253718, intron 2 of 19)	5689.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101900853-4	chr7	101900348	101901348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081679, intron 3 of 3)	MIRb|SINE|MIR	2937.0	NM_001282088	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113674685-2	chr6	113674185	113675185	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 5 of 11)	intron (NM_001113553, intron 5 of 11)	-22365.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150730422-4	chr4	150729929	150730929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78255.0	NM_173774	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-123196432-4	chr10	123195894	123196894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301628, intron 1 of 20)	CpG	625.0	NM_027604	14479.0	Mm.244209	NM_027604	ENSMUSG00000020124	Usp15	4921514G19Rik|AI327321|E430033I05Rik|Gcap18	ubiquitin specific peptidase 15	protein-coding	12.5	29.5	7.5	8.0	26.5	3.0
Merged-chr6-8509300-4	chr6	8508794	8509794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133236)	promoter-TSS (NM_133236)	-133.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30974355-4	chr14	30973836	30974836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011849, exon 8 of 15)	exon (NM_011849, exon 8 of 15)	22959.0	NM_011849	23955.0	Mm.251494	NM_011849	ENSMUSG00000021918	Nek4	Stk2	NIMA (never in mitosis gene a)-related expressed kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139149403-1	chr5	139148903	139149903	+	1000.0	f0_balb.idr	promoter-TSS (NM_001081265)	promoter-TSS (NM_001081265)	598.0	NM_001359098	19085.0	Mm.306163	NM_008923	ENSMUSG00000025855	Prkar1b	AI385716|RIbeta	protein kinase, cAMP dependent regulatory, type I beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47855015-4	chr19	47854507	47855507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010362)	promoter-TSS (NM_010362)	34.0	NM_010362	14873.0	Mm.378931	NM_010362	ENSMUSG00000025068	Gsto1	AA407097|AI194287|AU018802|Gsto-1|Gstx|Spg-r|p28	glutathione S-transferase omega 1	protein-coding	15.0	43.0	34.0	19.5	35.5	66.0
Merged-chr14-63422837-2	chr14	63422337	63423337	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3c|LINE|L1	-5650.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71458195-4	chr6	71457706	71458706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-17569.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77655689-10	chr9	77655155	77656155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172925, exon 3 of 3)	exon (NM_172925, exon 3 of 3)	18923.0	NM_172925	244923.0	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	0.0	8.5	0.5	0.0	9.0	0.5
Merged-chr1-36273493-4	chr1	36272996	36273996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153408)	promoter-TSS (NM_153408)	-71.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-12320896-4	chr12	12320403	12321403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 2 of 11)	intron (NM_001146119, intron 2 of 11)	58764.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72322619-4	chr8	72322138	72323138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008452)	TTS (NM_008452)	3576.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	60.5	144.5	102.0	57.5	168.5	82.0
Merged-chr17-33760481-4	chr17	33759984	33760984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008997)	promoter-TSS (NM_008997)	2.0	NM_008997	19326.0	Mm.387587	NM_008997	ENSMUSG00000077450	Rab11b	A730055L17Rik	RAB11B, member RAS oncogene family	protein-coding	25.5	95.0	71.0	28.5	96.5	73.0
Merged-chr6-49013190-4	chr6	49012680	49013680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13564.0	NR_126454	75347.0	Mm.207324	NR_126454	ENSMUSG00000107656	4930563H07Rik	-	RIKEN cDNA 4930563H07 gene	ncRNA	3.0	5.5	10.0	1.5	4.0	1.5
Merged-chr7-130893253-4	chr7	130892756	130893756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357696, intron 5 of 12)	intron (NM_001357696, intron 5 of 12)	-15012.0	NR_106028	102466219.0		NR_106028	ENSMUSG00000104914	Mir7061	mmu-mir-7061	microRNA 7061	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112588689-4	chr12	112588195	112589195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198411)	promoter-TSS (NM_198411)	-89.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-56104468-4	chr9	56103966	56104966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	14490.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45012560-4	chr4	45012081	45013081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163284)	promoter-TSS (NM_001163284)	-169.0	NM_173399	230119.0	Mm.44222	NM_173399	ENSMUSG00000049657	Zbtb5	5930421I10|9430083K24Rik|AI646847|mKIAA0354	zinc finger and BTB domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54884607-4	chr11	54884104	54885104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	18221.0	NM_008248	15254.0	Mm.425	NM_008248	ENSMUSG00000020267	Hint1	AA673479|Hint|Ipk1|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91030963-4	chr16	91030477	91031477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152264, intron 7 of 17)	B1F1|SINE|Alu	13402.0	NM_026110	67367.0	Mm.347	NM_026110	ENSMUSG00000022974	Paxbp1	1810007M14Rik|C21orf66|Gcfc|Gcfc1|Pax3/7bp	PAX3 and PAX7 binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-14905061-4	chr14	14904523	14905523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195229, intron 22 of 34)	intron (NM_001195229, intron 22 of 34)	84208.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	5.0	2.0	3.0	5.5	3.5	4.0
Merged-chr1-166409306-4	chr1	166408806	166409806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175170, exon 2 of 6)	5' UTR (NM_175170, exon 2 of 6)	522.0	NM_001142948	71592.0	Mm.192094	NM_175170	ENSMUSG00000040596	Pogk	9130401E23Rik|BASS2|mKIAA1513	pogo transposable element with KRAB domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81585254-4	chr15	81584759	81585759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177821)	promoter-TSS (NM_177821)	-955.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107631747-4	chr3	107631236	107632236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153563)	promoter-TSS (NM_153563)	-26.0	NM_153563	229707.0	Mm.278643	NM_153563	ENSMUSG00000014601	Strip1	6330569M22Rik|6530401O14Rik|Fam40a	striatin interacting protein 1	protein-coding	7.5	13.5	9.5	7.5	13.5	8.5
Merged-chr11-69409535-4	chr11	69409038	69410038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017426, intron 1 of 22)	intron (NM_001017426, intron 1 of 22)	4137.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	59.0	187.0	151.5	79.5	160.5	130.5
Merged-chr4-150583124-2	chr4	150582624	150583624	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	69050.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	12.0	28.0	22.5	15.0	40.5	53.0
Merged-chr7-141477334-4	chr7	141476776	141477776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252588, intron 1 of 7)	MIRc|SINE|MIR	896.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32507305-4	chr2	32506814	32507814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28045.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54820865-4	chr12	54820420	54821420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25258.0	NM_026998	72183.0	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-61199772-4	chr19	61199267	61200267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23458.0	NM_001177513	633057.0	Mm.426097	NM_001177513	ENSMUSG00000094649	Gm7102	EG633057	predicted gene 7102	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-46735448-4	chr13	46734949	46735949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7600.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	108.0	160.0	153.5	101.0	168.5	169.0
Merged-chr17-34198391-4	chr17	34197884	34198884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010724, exon 1 of 6)	5' UTR (NM_010724, exon 1 of 6)	189.0	NM_010724	16913.0	Mm.180191	NM_010724	ENSMUSG00000024338	Psmb8	Lmp-7|Lmp7	proteasome (prosome, macropain) subunit, beta type 8 (large multifunctional peptidase 7)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138288943-4	chr1	138288443	138289443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177397, exon 3 of 3)	3' UTR (NM_177397, exon 3 of 3)	15205.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52772617-4	chr2	52772116	52773116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-30467.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31453673-4	chr15	31453172	31454172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145852)	promoter-TSS (NM_145852)	17.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75588127-4	chr11	75587631	75588631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008850)	promoter-TSS (NM_008850)	52.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	39.0	163.5	88.0	39.0	137.0	71.5
Merged-chr16-95834488-2	chr16	95833988	95834988	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040485, intron 3 of 3)	B4A|SINE|B4	64225.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-116946581-6	chr8	116946065	116947065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177700, intron 1 of 3)	intron (NM_177700, intron 1 of 3)	3172.0	NM_177700	234776.0	Mm.259736	NM_177700	ENSMUSG00000047388	Atmin	Asciz|gpg6|mKIAA0431	ATM interactor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132253311-4	chr2	132252787	132253787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011045)	promoter-TSS (NM_011045)	-107.0	NM_011045	18538.0	Mm.7141	NM_011045	ENSMUSG00000027342	Pcna	-	proliferating cell nuclear antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98370960-4	chr12	98370465	98371465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102330.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86077830-2	chr12	86077330	86078330	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009368, exon 1 of 7)	exon (NM_009368, exon 1 of 7)	1211.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25285247-4	chr10	25284736	25285736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 2 of 7)	intron (NM_018747, intron 2 of 7)	13927.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24669635-4	chr17	24669143	24670143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183149)	promoter-TSS (NM_183149)	-44.0	NM_001348231	213753.0	Mm.219581	NM_183149	ENSMUSG00000041130	Zfp598	BC023040|Ntrap|Znf598	zinc finger protein 598	protein-coding	42.5	139.5	80.0	45.0	121.5	106.0
Merged-chr9-65885088-4	chr9	65884590	65885590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170907)	promoter-TSS (NM_001170907)	83.0	NM_001170907	56404.0	Mm.208379	NM_019797	ENSMUSG00000032386	Trip4	4930558E03Rik|ASC-1|Asc1|BB191711	thyroid hormone receptor interactor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141379747-4	chr7	141379250	141380250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12410.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21375387-4	chr16	21374874	21375874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42018.0	NR_131983	76222.0	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-70856150-4	chr6	70855651	70856651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313918, intron 1 of 2)	Lx9|LINE|L1	11636.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16105810-4	chr1	16105330	16106330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133832)	promoter-TSS (NM_133832)	-52.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0.0	24.0	23.0	24.0	40.0	17.0
Merged-chr9-108002543-4	chr9	108002030	108003030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013785)	promoter-TSS (NM_013785)	-118.0	NM_013785	27399.0	Mm.276155	NM_013785	ENSMUSG00000032594	Ip6k1	1200016D08Rik|AU022776|Ihpk1|InsP6|InsP6k1|Itpk6	inositol hexaphosphate kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123907157-4	chr5	123906710	123907710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026603)	promoter-TSS (NM_026603)	-65.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	121.5	259.0	154.0	105.5	268.5	234.0
Merged-chr3-142700973-4	chr3	142700486	142701486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293560)	promoter-TSS (NM_001293560)	-62.0	NM_173763	229905.0	Mm.289643	NM_173763	ENSMUSG00000040213	Kyat3	Ccbl2|KATIII|Kat3	kynurenine aminotransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191180617-4	chr1	191180136	191181136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007498, intron 1 of 3)	intron (NM_007498, intron 1 of 3)	2697.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3535486-4	chr11	3534983	3535983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159284, intron 3 of 21)	intron (NM_001159284, intron 3 of 21)	3809.0	NM_013870	29856.0	Mm.188516	NM_013870	ENSMUSG00000020439	Smtn	smsmo	smoothelin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38742300-4	chr16	38741813	38742813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285793)	promoter-TSS (NM_001285793)	54.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31336828-4	chr15	31336317	31337317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027496, intron 1 of 3)	(TG)n|Simple_repeat|Simple_repeat	30942.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11203900-2	chr16	11203400	11204400	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025546)	promoter-TSS (NM_025546)	517.0	NR_038156	69918.0	Mm.440400	NR_038154		2610020C07Rik	-	RIKEN cDNA 2610020C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102671161-4	chr15	102670660	102671660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026468)	promoter-TSS (NM_026468)	-113.0	NM_026468	67942.0	Mm.10314	NM_026468	ENSMUSG00000062683	Atp5g2	1810041M08Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114928438-4	chr5	114927909	114928909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359945, intron 2 of 5)	intron (NM_001359945, intron 2 of 5)	5169.0	NM_001359945	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	14.5	61.5	13.5	15.0	37.0	31.0
Merged-chr17-17581473-4	chr17	17580966	17581966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	43023.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	15.5	66.5	23.0	58.0	72.5	47.5
Merged-chr8-104248532-4	chr8	104248025	104249025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021028)	promoter-TSS (NM_021028)	33.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134567700-4	chr5	134567207	134568207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER44D|DNA|TcMar-Tigger	-4369.0	NR_106087	102465708.0		NR_106087	ENSMUSG00000106323	Mir7228	mmu-mir-7228	microRNA 7228	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-55962454-4	chr7	55961986	55962986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023647)	promoter-TSS (NM_023647)	7.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	28.0	135.0	108.0	41.5	125.0	119.5
Merged-chr6-129232376-1	chr6	129231876	129232876	+	1000.0	f1_c57bl6.idr	TTS (NR_040265)	TTS (NR_040265)	5669.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	42.5	93.5	60.0	37.0	110.0	38.5
Merged-chr8-79415081-4	chr8	79414578	79415578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15610.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-127453672-4	chr6	127453177	127454177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346512)	promoter-TSS (NM_001346512)	50.0	NM_001346512	101187.0	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	36.0	102.5	92.5	32.0	76.0	72.0
Merged-chr5-81076577-4	chr5	81076091	81077091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198702, intron 2 of 27)	intron (NM_198702, intron 2 of 27)	54998.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.0	0.0	2.5	7.0	0.0	0.0
Merged-chr16-30776462-4	chr16	30775958	30776958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	176735.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	21.0	48.5	38.0	27.0	50.5	44.5
Merged-chr13-98815324-4	chr13	98814831	98815831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172591, exon 1 of 26)	5' UTR (NM_172591, exon 1 of 26)	118.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	49.5	135.0	98.0	56.5	138.5	92.0
Merged-chr3-97204072-4	chr3	97203572	97204572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029933, exon 10 of 10)	3' UTR (NM_029933, exon 10 of 10)	23292.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-104494277-2	chr2	104493777	104494777	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001145824, exon 1 of 16)	5' UTR (NM_001145824, exon 1 of 16)	212.0	NM_010434	15259.0	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86189272-4	chr15	86188768	86189768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3127.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-89162554-4	chr18	89162040	89163040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34887.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86509600-4	chr1	86509127	86510127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16930.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34389400-4	chr1	34388888	34389888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43811.0	NR_039562	100628580.0		NR_039562	ENSMUSG00000092852	Mir5103	mir-5103|mmu-mir-5103|mu-mir-5103	microRNA 5103	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135416613-4	chr4	135416095	135417095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030481)	promoter-TSS (NR_030481)	38.0	NR_030481	735285.0		NR_030481	ENSMUSG00000076123	Mir700	Mirn700|mir-700|mmu-mir-700	microRNA 700	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49246073-4	chr7	49245599	49246599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175272)	promoter-TSS (NM_175272)	-90.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84451155-4	chr12	84450693	84451693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173756)	promoter-TSS (NM_173756)	-169.0	NM_134042	104776.0	Mm.247510	NM_134042	ENSMUSG00000021238	Aldh6a1	1110038I05Rik|Mmsdh	aldehyde dehydrogenase family 6, subfamily A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-116582976-4	chr10	116582459	116583459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1448.0	NM_001359249	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-73326660-4	chr11	73326156	73327156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2019.0	NM_023113	11484.0	Mm.293574	NM_023113	ENSMUSG00000020774	Aspa	Acy-2|Acy2|nur7	aspartoacylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-84151764-2	chr7	84151264	84152264	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133722, exon 1 of 3)	exon (NM_133722, exon 1 of 3)	129.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-102995690-4	chr3	102995152	102996152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025679)	promoter-TSS (NM_025679)	-88.0	NM_025679	66641.0	Mm.33937	NM_025679	ENSMUSG00000027854	Sike1	2810005O12Rik|5730470L24Rik|AI450236|AI839862|Sike|Sikeb	suppressor of IKBKE 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-108223328-4	chr11	108222816	108223816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	120572.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165402124-4	chr2	165401606	165402606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1712.0	NM_029021	74614.0	Mm.72179	NM_029021	ENSMUSG00000027670	Ocstamp	4833422F24Rik|OC-STAMP	osteoclast stimulatory transmembrane protein	protein-coding	14.5	33.5	20.0	24.5	41.5	37.5
Merged-chr17-34341132-4	chr17	34340621	34341621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033978, exon 5 of 5)	3' UTR (NM_001033978, exon 5 of 5)	3524.0	NM_010381	100504404.0	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	16.5	20.0	26.0	32.0	64.5	38.5
Merged-chr12-16811040-4	chr12	16810556	16811556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027677)	promoter-TSS (NR_027677)	91.0	NM_033270	50496.0	Mm.23296	NM_033270	ENSMUSG00000057469	E2f6	AI462434|E2F6a|E2F6b|EMA	E2F transcription factor 6	protein-coding	12.5	9.5	14.5	3.0	10.0	22.5
Merged-chr8-122775861-2	chr8	122775361	122776361	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144932, intron 1 of 9)	CpG	375.0	NM_144932	257633.0	Mm.334875	NM_144932	ENSMUSG00000015016	Acsf3	BB101783	acyl-CoA synthetase family member 3	protein-coding	0.0	2.5	2.0	0.0	1.0	7.0
Merged-chr10-117831080-4	chr10	117830590	117831590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	14884.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107325781-2	chr11	107325281	107326281	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	-136400.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	4.5	2.5	1.5	0.5	12.0	1.5
Merged-chr17-6106857-4	chr17	6106356	6107356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001103181)	promoter-TSS (NM_001103181)	26.0	NM_001103181	68842.0	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	21.5	36.0	37.5	10.5	22.0	19.5
Merged-chr14-27338056-2	chr14	27337556	27338556	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	2019.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	25.5	20.5	23.0	20.5	14.5	14.0
Merged-chr10-67691010-2	chr10	67690510	67691510	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-119051.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-126628719-4	chr3	126628233	126629233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	31782.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31109305-4	chr3	31108794	31109794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039090, intron 2 of 6)	intron (NM_001039090, intron 2 of 6)	14236.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48287033-4	chr17	48286524	48287524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-13014.0	NM_001033405	328833.0	Mm.329104	NM_001033405	ENSMUSG00000071068	Treml2	AW049306|Gm750|Tlt2	triggering receptor expressed on myeloid cells-like 2	protein-coding	4.0	4.0	3.5	4.0	4.5	3.0
Merged-chr18-49500970-4	chr18	49500469	49501469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22320.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108662100-4	chr9	108661615	108662615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020520)	promoter-TSS (NM_020520)	17.0	NM_020520	57279.0	Mm.29666	NM_020520	ENSMUSG00000032602	Slc25a20	1110007P09Rik|C78826|Cact|mCAC	solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20	protein-coding	46.5	96.5	88.5	24.0	81.5	65.5
Merged-chr7-135537791-4	chr7	135537343	135538343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316678)	promoter-TSS (NM_001316678)	19.0	NM_001316678	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35998295-4	chr17	35997804	35998804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015618, intron 1 of 1)	ORR1D1|LTR|ERVL-MaLR	3800.0	NR_015618	77810.0	Mm.483143	NR_015618		A930015D03Rik	-	RIKEN cDNA A930015D03 gene	ncRNA	2.5	33.5	2.5	3.5	34.5	7.0
Merged-chr11-88047653-4	chr11	88047166	88048166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_173374, exon 1 of 4)	5' UTR (NM_173374, exon 1 of 4)	293.0	NM_173374	110809.0	Mm.391719	NM_173374	ENSMUSG00000018379	Srsf1	1110054N12Rik|5730507C05Rik|6330415C05Rik|AI482334|AW491331|Asf|Sf2|Sfrs1	serine/arginine-rich splicing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71671737-4	chr8	71671254	71672254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029873)	promoter-TSS (NM_001029873)	3.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	7.5	12.5	26.5	10.5	15.0	13.5
Merged-chr16-42876216-3	chr16	42875719	42876719	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040521)	promoter-TSS (NR_040521)	-457.0	NR_040522	75722.0	Mm.243747	NR_040521	ENSMUSG00000075070	4932412D23Rik	Gm10809	RIKEN cDNA 4932412D23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46798492-4	chr11	46797967	46798967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12332.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19506623-4	chr10	19506104	19507104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152785, intron 2 of 2)	intron (NR_152785, intron 2 of 2)	11961.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106290118-2	chr9	106289633	106290633	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 6 of 10)	intron (NM_027354, intron 6 of 10)	9072.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	0.0	0.0	0.0	0.0	3.0	0.0
Merged-chr18-12643669-5	chr18	12643053	12644053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028341)	promoter-TSS (NM_028341)	20.0	NM_028341	72747.0	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-126910916-4	chr6	126910412	126911412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207210, intron 2 of 14)	intron (NM_207210, intron 2 of 14)	10927.0	NM_207210	101320.0	Mm.44896	NM_207210	ENSMUSG00000030345	Dyrk4	AW049118|Dyrk4a|Dyrk4b	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4	protein-coding	84.5	138.5	109.0	80.5	172.0	90.5
Merged-chr10-81357489-4	chr10	81357013	81358013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028657)	promoter-TSS (NM_028657)	22.0	NM_028657	73822.0	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1|gr	major facilitator superfamily domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-99006402-1	chr13	99005902	99006902	+	1000.0	f0_balb.idr	Intergenic	MLT2B2|LTR|ERVL	-21837.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61123580-1	chr18	61123080	61124080	+	1000.0	f1_balb.idr	intron (NM_001037859, intron 11 of 21)	L1MB5|LINE|L1	6112.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	4.0	1.5	7.0	6.5	6.0	2.5
Merged-chr5-148465544-4	chr5	148465064	148466064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65660.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36947659-4	chr1	36947169	36948169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8142.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10191504-4	chr19	10190993	10191993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_105959)	TTS (NR_105959)	118.0	NR_105959	102465600.0		NR_105959	ENSMUSG00000098363	Mir6993	Gm27642|mmu-mir-6993	microRNA 6993	ncRNA	0.0	4.0	0.5	0.0	0.0	2.5
Merged-chr4-130795116-4	chr4	130794614	130795614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	MIR|SINE|MIR	2577.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43530348-4	chr19	43529853	43530853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-5748.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-86757136-2	chr8	86756636	86757636	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11130.0	NM_009172	20437.0	Mm.324553	NM_009172	ENSMUSG00000036840	Siah1a	AA982064|AI853500|Sinh1a	siah E3 ubiquitin protein ligase 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105702077-4	chr5	105701578	105702578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	1268.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	21.0	55.5	23.5	36.5	69.5	49.0
Merged-chr12-78980880-4	chr12	78980373	78981373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178745, intron 1 of 2)	intron (NM_178745, intron 1 of 2)	2605.0	NM_001170401	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	30.0	144.0	99.5	48.0	108.5	98.0
Merged-chr3-79288284-4	chr3	79287777	79288777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57099.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	2.5	12.5	12.5	3.5	12.5	12.5
Merged-chr3-100440888-4	chr3	100440387	100441387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14482.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57211287-4	chr16	57210804	57211804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 4 of 17)	(TC)n|Simple_repeat|Simple_repeat	-9833.0	NM_001358434	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	16.5	14.0	3.0	5.5	8.0	0.0
Merged-chr9-44568259-3	chr9	44567741	44568741	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36651.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	289.0	532.5	333.0	265.5	520.0	313.0
Merged-chr7-102426496-4	chr7	102426027	102427027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009287, intron 8 of 11)	intron (NM_009287, intron 8 of 11)	-15168.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-20945266-4	chr17	20944756	20945756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016891)	promoter-TSS (NM_016891)	-198.0	NM_016891	51792.0	Mm.294138	NM_016891	ENSMUSG00000007564	Ppp2r1a	6330556D22Rik|PP2A|PR65	protein phosphatase 2, regulatory subunit A, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64075894-4	chr15	64075321	64076321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15373.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	6.0	5.5	18.5	6.0	5.5	19.5
Merged-chr12-84009870-2	chr12	84009370	84010370	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_012006, exon 1 of 3)	exon (NM_012006, exon 1 of 3)	368.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118180414-4	chr14	118179904	118180904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43277.0	NM_021434	58245.0	Mm.275411	NM_021434	ENSMUSG00000022131	Gpr180	AB041545|E130016I23Rik|Itr	G protein-coupled receptor 180	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44555455-4	chr19	44554962	44555962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347447)	promoter-TSS (NM_001347447)	-20.0	NM_026061	67264.0	Mm.2060	NM_026061	ENSMUSG00000025204	Ndufb8	2900010I05Rik|AI987932|CI-ASHI	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 8	protein-coding	1.0	1.0	1.0	1.0	1.0	1.0
Merged-chr5-21132129-4	chr5	21131646	21132646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44133.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31468010-4	chr5	31467503	31468503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360001, intron 5 of 12)	ORR1E|LTR|ERVL-MaLR	15567.0	NM_001360000	269639.0	Mm.259127	NM_172993	ENSMUSG00000062761	Zfp512	2500002M11Rik|AI450173|D230008H22|Znf512	zinc finger protein 512	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160214768-4	chr2	160214270	160215270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	112724.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-105016974-4	chr2	105016367	105017367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145380, intron 1 of 10)	CpG	160.0	NM_145380	98221.0	Mm.379278	NM_145380	ENSMUSG00000027170	Eif3m	Ga17|Pcid1|Tango7	eukaryotic translation initiation factor 3, subunit M	protein-coding	9.0	4.0	11.5	19.5	26.5	12.0
Merged-chr15-40954257-2	chr15	40953757	40954757	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356998, intron 3 of 6)	intron (NM_001356998, intron 3 of 6)	-219444.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145222190-4	chr4	145221686	145222686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 8 of 9)	intron (NM_011610, intron 8 of 9)	24684.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126695640-4	chr8	126695153	126696153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102217.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	8.5	14.5	21.0	16.5	31.0	12.0
Merged-chr5-139324979-4	chr5	139324483	139325483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 1 of 10)	intron (NM_172723, intron 1 of 10)	481.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125066609-2	chr8	125066110	125067110	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 1 of 12)	intron (NM_174854, intron 1 of 12)	12415.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	44.0	114.5	79.5	55.0	96.5	65.0
Merged-chr18-57965632-2	chr18	57965132	57966132	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86954.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	0.0	0.0	0.5	1.0	0.0	0.0
Merged-chr6-117917052-4	chr6	117916570	117917570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166427)	promoter-TSS (NM_001166427)	-224.0	NM_001166427	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34959368-4	chr17	34958840	34959840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010478)	promoter-TSS (NM_010478)	-102.0	NM_010478	15511.0	Mm.372314	NM_010478	ENSMUSG00000090877	Hspa1b	Hsp70|Hsp70-1|Hsp70.1|hsp68	heat shock protein 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8928840-2	chr19	8928340	8929340	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144872)	promoter-TSS (NM_144872)	516.0	NM_009073	19881.0	Mm.426094	NM_009073	ENSMUSG00000071648	Rom1	M101156|Rgsc1156|Rom-1|Rosp1|Tspan23	rod outer segment membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30667646-2	chr5	30667146	30668146	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007681, intron 1 of 4)	ID4|SINE|ID	760.0	NR_126074	12615.0	Mm.290563	NM_007681	ENSMUSG00000029177	Cenpa	Cenp-A	centromere protein A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-116268882-4	chr8	116268395	116269395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-236120.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41449939-2	chr10	41449439	41450439	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153398)	promoter-TSS (NM_153398)	-419.0	NM_001277229	268294.0	Mm.258475	NM_153398	ENSMUSG00000019826	Zbtb24	BC055367|Bif1|Bsg1|ZNF450	zinc finger and BTB domain containing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145149240-4	chr6	145148740	145149740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361633, intron 4 of 16)	intron (NM_001361633, intron 4 of 16)	3765.0	NM_001361633	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	1.5	1.5	14.0	2.5	15.0	4.0
Merged-chr2-23069222-6	chr2	23068719	23069719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001102438, exon 1 of 13)	5' UTR (NM_001102438, exon 1 of 13)	147.0	NM_001355638	74159.0	Mm.181973	NM_028793	ENSMUSG00000026781	Acbd5	1300014E15Rik	acyl-Coenzyme A binding domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10897530-4	chr16	10896995	10897995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17302.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39781526-4	chr6	39781018	39782018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29418.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21637537-4	chr16	21636990	21637990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 45 of 46)	RMER1B|Other|Other	57175.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-5447059-4	chr15	5446549	5447549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49269.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64092954-4	chr5	64092434	64093434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356964)	promoter-TSS (NM_001356964)	-5.0	NM_025700	66681.0	Mm.2325	NM_025700	ENSMUSG00000029171	Pgm1	3230402E02Rik|Pgm-1|Pgm2	phosphoglucomutase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-77084287-4	chr16	77083793	77084793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 17 of 23)	intron (NM_013918, intron 17 of 23)	70224.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123854752-2	chr9	123854252	123855252	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011798, exon 2 of 2)	3' UTR (NM_011798, exon 2 of 2)	-2853.0	NM_001110253	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49856422-2	chr16	49855922	49856922	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 1 of 9)	intron (NM_010581, intron 1 of 9)	768.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128566180-4	chr10	128565685	128566685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011119)	promoter-TSS (NM_011119)	-251.0	NM_011119	18813.0	Mm.4742	NM_011119	ENSMUSG00000025364	Pa2g4	38kDa|AA672939|Ebp1|Plfap	proliferation-associated 2G4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13868945-4	chr10	13868457	13869457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347362)	promoter-TSS (NM_001347362)	0.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55532962-4	chr4	55532451	55533451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010637)	promoter-TSS (NM_010637)	-476.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	49.5	93.0	115.5	26.0	95.5	50.0
Merged-chr5-99382950-4	chr5	99382453	99383453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-130026.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-68793902-4	chr8	68793391	68794391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293792)	promoter-TSS (NM_001293792)	-38.0	NM_001359129	70885.0	Mm.252421	NM_027590	ENSMUSG00000031864	Ints10	4921521J11Rik|AI462004	integrator complex subunit 10	protein-coding	39.5	52.0	54.0	34.5	39.5	56.5
Merged-chr15-82338942-4	chr15	82338434	82339434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008669)	promoter-TSS (NM_008669)	-108.0	NM_008669	17939.0	Mm.20325	NM_008669	ENSMUSG00000022453	Naga	-	N-acetyl galactosaminidase, alpha	protein-coding	37.5	74.5	56.0	29.0	52.5	59.0
Merged-chr14-66183331-4	chr14	66182833	66183833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 5 of 30)	RLTR49|LTR|ERVK	30491.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-104401316-4	chr7	104400817	104401817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42671.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	60.0	150.0	108.0	72.5	143.5	136.5
Merged-chr11-107341589-4	chr11	107341101	107342101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	129119.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38866045-4	chr6	38865539	38866539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 1 of 14)	intron (NM_010433, intron 1 of 14)	10151.0	NM_010433	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72168161-4	chr5	72167610	72168610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356611)	promoter-TSS (NM_001356611)	79.0	NM_001356611	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116672568-4	chr6	116672053	116673053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178045, intron 1 of 10)	intron (NM_178045, intron 1 of 10)	1283.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128409922-4	chr10	128409431	128410431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358973)	promoter-TSS (NM_001358973)	-81.0	NM_027257	69917.0	Mm.46614	NM_027257	ENSMUSG00000025374	Nabp2	2610036N15Rik|Obfc2b|SSB1	nucleic acid binding protein 2	protein-coding	3.5	9.0	5.5	3.5	5.0	2.0
Merged-chr13-34107195-4	chr13	34106691	34107691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046184, intron 1 of 4)	L1MEf|LINE|L1	6081.0	NR_046184	432745.0	Mm.159104	NR_046184	ENSMUSG00000113591	4930447K03Rik	-	RIKEN cDNA 4930447K03 gene	ncRNA	15.5	82.5	46.5	30.5	28.0	32.5
Merged-chr16-51921264-4	chr16	51920778	51921778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD|LINE|L1	66009.0	NR_153657	629091.0	Mm.364775	NR_153657		Gm29686	-	predicted gene, 29686	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150861273-4	chr2	150860780	150861780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 1 of 12)	B2_Mm2|SINE|B2	-18710.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117375997-2	chr10	117375497	117376497	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013391, intron 1 of 9)	CpG	976.0	NM_001013391	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	54.0	227.5	137.5	66.0	175.0	125.5
Merged-chr10-40348735-4	chr10	40348232	40349232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168304)	promoter-TSS (NM_001168304)	-576.0	NM_001291817	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23544403-4	chr13	23543894	23544894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178197)	promoter-TSS (NM_178197)	342.0	NM_013548	260423.0	Mm.221389	NM_013548	ENSMUSG00000100210	Hist1h3f	H3.2-221|Hist1	histone cluster 1, H3f	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-1760-1	chr4	1260	2260	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-3170323.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155734518-4	chr4	155733989	155734989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001101506)	promoter-TSS (NM_001101506)	-315.0	NM_001101506	381582.0	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	31.0	75.5	42.0	34.0	77.0	44.5
Merged-chr4-139574475-4	chr4	139573974	139574974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205173)	promoter-TSS (NM_001205173)	-246.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	49.0	83.0	67.5	40.5	24.0	39.0
Merged-chr10-60370866-2	chr10	60370366	60371366	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001159572, exon 7 of 7)	3' UTR (NM_001159572, exon 7 of 7)	24015.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79322874-2	chr15	79322374	79323374	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016915, intron 1 of 15)	intron (NM_016915, intron 1 of 15)	5497.0	NM_016915	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124684706-4	chr2	124684210	124685210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31129.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88576379-4	chr1	88575871	88576871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24854.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43045885-4	chr4	43045379	43046379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045567, intron 1 of 7)	intron (NR_045567, intron 1 of 7)	341.0	NR_045567	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	4.5	38.5	18.5	4.0	53.0	21.5
Merged-chr4-108083574-4	chr4	108083064	108084064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011327, intron 10 of 15)	RSINE1|SINE|B4	-3793.0	NR_105823	102465213.0		NR_105823	ENSMUSG00000098980	Mir6397	Gm28004|mmu-mir-6397	microRNA 6397	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120665906-4	chr10	120665390	120666390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99842.0	NR_038000	70874.0	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4354703-4	chr18	4354185	4355185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040328, intron 2 of 3)	intron (NR_040328, intron 2 of 3)	1138.0	NR_040328	73915.0	Mm.482777	NR_040328		4833419F23Rik	-	RIKEN cDNA 4833419F23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51480209-1	chr10	51479709	51480709	+	1000.0	f0_balb.idr	promoter-TSS (NM_001291893)	promoter-TSS (NM_001291893)	-403.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3895431-4	chr12	3894935	3895935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 1 of 17)	intron (NM_153743, intron 1 of 17)	3691.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17629249-4	chr6	17628744	17629744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7766.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	22.0	64.0	38.0	21.0	76.5	45.0
Merged-chr4-34495195-4	chr4	34494688	34495688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55427.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29540498-4	chr6	29539998	29540998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347079)	TTS (NM_001347079)	11216.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-110903426-4	chr13	110902926	110903926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131193)	promoter-TSS (NR_131193)	-73.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-80150263-4	chr2	80149758	80150758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20600.0	NM_001355140	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117210555-4	chr4	117210030	117211030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27906.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-143803747-4	chr1	143803228	143804228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019562, intron 10 of 10)	intron (NM_019562, intron 10 of 10)	26450.0	NM_019562	56207.0	Mm.261004	NM_019562	ENSMUSG00000018189	Uchl5	5830413B11Rik|Uch37	ubiquitin carboxyl-terminal esterase L5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-150165040-4	chr1	150164549	150165549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110420)	promoter-TSS (NR_110420)	-101.0	NR_110420	102639566.0	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84970916-4	chr12	84970390	84971390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178065)	promoter-TSS (NM_178065)	-4.0	NM_178065	68497.0	Mm.24446	NM_178065	ENSMUSG00000042350	Arel1	1110018G07Rik|AI649076|AW610792|Kiaa0317|mKIAA0317	apoptosis resistant E3 ubiquitin protein ligase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70680111-4	chr11	70679626	70680626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190379, intron 8 of 20)	intron (NM_001190379, intron 8 of 20)	7979.0	NM_001190376	216874.0	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39590390-4	chr1	39589891	39590891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13044.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79321837-4	chr2	79321339	79322339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010576, intron 24 of 27)	intron (NM_010576, intron 24 of 27)	66413.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-94749996-4	chr17	94749498	94750498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024720)	promoter-TSS (NR_024720)	21.0	NM_001357136	76781.0	Mm.139146	NM_176917	ENSMUSG00000055660	Mettl4	2410198H06Rik|A730091E08Rik|AV296509|HsT661	methyltransferase like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16086756-4	chr19	16086247	16087247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-46084.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191266768-4	chr1	191266266	191267266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42312.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	0.0	3.0	0.0	0.0	0.0	1.5
Merged-chr18-39636271-4	chr18	39635778	39636778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137219.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131968817-2	chr1	131968317	131969317	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177628, intron 1 of 4)	intron (NM_001177628, intron 1 of 4)	-1792.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31195351-4	chr14	31194835	31195835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347583, intron 3 of 13)	intron (NM_001347583, intron 3 of 13)	11491.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70841985-4	chr9	70841484	70842484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	92824.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	14.0	33.5	25.0	16.5	36.0	21.5
Merged-chr12-40709326-2	chr12	40708826	40709826	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 15 of 52)	intron (NM_172803, intron 15 of 52)	263273.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24685750-4	chr5	24685246	24686246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016736)	promoter-TSS (NM_016736)	-69.0	NM_016736	53312.0	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53227926-4	chr4	53227394	53228394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18302.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56770928-2	chr17	56770428	56771428	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_144858)	TTS (NM_144858)	652.0	NM_001195673	100504446.0	Mm.46157	NM_001195673	ENSMUSG00000090273	Prr22	Gm546	proline rich 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-74068500-4	chr5	74068066	74069066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177561)	promoter-TSS (NM_177561)	-155.0	NM_177561	69727.0	Mm.48795	NM_177561	ENSMUSG00000054814	Usp46	1190009E20Rik|2410018I08Rik|AI451644	ubiquitin specific peptidase 46	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53346192-4	chr15	53345708	53346708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010162)	promoter-TSS (NM_010162)	-25.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-148946485-4	chr6	148945974	148946974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019643)	promoter-TSS (NM_019643)	-4.0	NM_001361398	56306.0	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Sinhcaf|Tera	family with sequence similarity 60, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-89555566-4	chr1	89555069	89556069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	100758.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32204237-2	chr2	32203737	32204737	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001159634, exon 12 of 32)	exon (NM_001159634, exon 12 of 32)	-32446.0	NM_145145	99011.0	Mm.31192	NM_145145	ENSMUSG00000039254	Pomt1	AI505244	protein-O-mannosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112629548-4	chr12	112629041	112630041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 2 of 12)	intron (NM_007421, intron 2 of 12)	9494.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58416837-2	chr15	58416337	58417337	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145959, intron 1 of 23)	intron (NM_145959, intron 1 of 23)	1369.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-66905271-4	chr13	66904679	66905679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177750)	promoter-TSS (NM_001177750)	171.0	NM_026219	67530.0	Mm.379136	NM_026219	ENSMUSG00000021520	Uqcrb	2210415M14Rik|QP-C|QPC|UQBC|UQBP|UQPC	ubiquinol-cytochrome c reductase binding protein	protein-coding	152.0	187.5	196.5	45.0	91.0	113.0
Merged-chr2-127079281-4	chr2	127078771	127079771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026678, intron 1 of 7)	RLTR28|LTR|ERVL	8614.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	44.0	114.5	78.5	17.0	51.0	44.0
Merged-chr9-21367008-2	chr9	21366508	21367508	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010561)	promoter-TSS (NM_010561)	-863.0	NM_001042708	16201.0	Mm.440026	NM_010561	ENSMUSG00000032178	Ilf3	MBII-26|MPHOSPH4|NF90|NFAR	interleukin enhancer binding factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45619567-2	chr17	45619067	45620067	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17465.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96618020-3	chr10	96617474	96618474	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007569, intron 1 of 1)	intron (NM_007569, intron 1 of 1)	973.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-33883547-4	chr1	33883064	33884064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177235, exon 2 of 7)	5' UTR (NM_177235, exon 2 of 7)	24057.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32587913-4	chr2	32587426	32588426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011373, intron 1 of 4)	intron (NM_011373, intron 1 of 4)	848.0	NM_011373	20448.0	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114773541-4	chr5	114773049	114774049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019834)	promoter-TSS (NM_019834)	-57.0	NM_001347400	26431.0	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	54.5	168.0	126.0	25.0	51.0	50.0
Merged-chr13-8996101-4	chr13	8995603	8996603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027000)	promoter-TSS (NM_027000)	-91.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94990918-4	chr11	94990416	94991416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172261)	promoter-TSS (NM_172261)	-296.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69209003-4	chr8	69208523	69209523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013379)	promoter-TSS (NM_001013379)	-23.0	NM_001013379	234358.0	Mm.334577	NM_001013379	ENSMUSG00000059897	Zfp930	-	zinc finger protein 930	protein-coding	16.5	58.5	45.5	20.0	73.0	50.0
Merged-chr5-150621811-4	chr5	150621309	150622309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362416, intron 6 of 7)	intron (NM_001362416, intron 6 of 7)	-27284.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-72425486-4	chr4	72424993	72425993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	224249.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120363443-4	chr14	120362956	120363956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	57004.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62505543-3	chr10	62505102	62506102	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 2 of 3)	intron (NM_001358965, intron 2 of 3)	2155.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21371304-4	chr11	21370795	21371795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139297)	promoter-TSS (NM_139297)	-28.0	NM_001290634	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	0.0	4.0	4.0	2.0	4.0	0.0
Merged-chr7-80828636-4	chr7	80828129	80829129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25298.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	7.5	34.5	6.5	14.5	31.5	5.0
Merged-chr13-107021866-5	chr13	107021284	107022284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015471)	promoter-TSS (NR_015471)	330.0	NM_001145779	16563.0	Mm.355686	NM_008442	ENSMUSG00000021693	Kif2a	C530030B14Rik|Kif2|Kns2|M-kinesin	kinesin family member 2A	protein-coding	1.0	4.0	4.5	0.0	0.5	1.0
Merged-chr5-143470964-4	chr5	143470447	143471447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 2 of 14)	intron (NM_144915, intron 2 of 14)	6454.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-56016566-2	chr16	56016066	56017066	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001024622, exon 5 of 5)	3' UTR (NM_001024622, exon 5 of 5)	13151.0	NM_001356449	76302.0	Mm.310642	NM_001024622	ENSMUSG00000071533	Pcnp	1110018D06Rik|AI647035	PEST proteolytic signal containing nuclear protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5295545-4	chr19	5295047	5296047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030109)	promoter-TSS (NM_030109)	-92.0	NM_030109	319322.0	Mm.196532	NM_030109	ENSMUSG00000024853	Sf3b2	145kDa|2610311M13Rik|2810441F20Rik|B230398H18Rik|SAP145|SF3b1|SF3b145|SF3b150	splicing factor 3b, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83632061-4	chr6	83631565	83632565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24051.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19225157-3	chr7	19224653	19225653	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175668)	TTS (NM_175668)	-3236.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	0.5	4.0	5.0	8.0	6.5	9.5
Merged-chr1-59316182-4	chr1	59315668	59316668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356389, intron 10 of 13)	intron (NM_001356389, intron 10 of 13)	59262.0	NM_001356389	271697.0	Mm.297713	NM_001033373	ENSMUSG00000026023	Cdk15	Als2cr7|Pftk2	cyclin-dependent kinase 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94321652-4	chr11	94321161	94322161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361574, intron 1 of 9)	CpG	302.0	NR_155069	67684.0	Mm.30927	NM_026313	ENSMUSG00000020863	Luc7l3	3300001P08Rik|Luc7a	LUC7-like 3 (S. cerevisiae)	protein-coding	44.5	85.0	88.5	30.0	95.5	86.5
Merged-chr7-97581007-4	chr7	97580518	97581518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081267, intron 1 of 15)	intron (NM_001081267, intron 1 of 15)	1122.0	NM_001081267	233532.0	Mm.43977	NM_001081267	ENSMUSG00000035623	Rsf1	4832420A03Rik|C030033M12Rik|Gm164|Hbxap|XAP8|p325	remodeling and spacing factor 1	protein-coding	41.5	43.5	38.5	37.0	41.0	37.0
Merged-chr14-7997381-4	chr14	7996881	7997881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3199.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-109059241-4	chr9	109058729	109059729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001012236)	promoter-TSS (NM_001012236)	22.0	NM_001012236	22040.0	Mm.439964	NM_011637	ENSMUSG00000049734	Trex1	AU041952	three prime repair exonuclease 1	protein-coding	154.5	206.5	165.0	101.5	278.5	126.5
Merged-chr6-148831456-4	chr6	148830881	148831881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081113)	promoter-TSS (NM_001081113)	86.0	NM_001081113	320727.0	Mm.260105	NM_001081113	ENSMUSG00000040029	Ipo8	6230418K12Rik|Abcc10|C130009K11Rik|MRP7|OM-1|Om1|Ranbp8	importin 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-71348505-4	chr10	71347995	71348995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027184, intron 1 of 5)	CpG	732.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83349453-4	chr6	83348946	83349946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175277)	promoter-TSS (NM_175277)	-38.0	NM_175277	78653.0	Mm.391470	NM_175277	ENSMUSG00000045160	Bola3	1810056O20Rik	bolA-like 3 (E. coli)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102942243-4	chr2	102941722	102942722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40557.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	6.0	24.5	16.0	11.0	22.5	13.5
Merged-chr13-5604366-4	chr13	5603842	5604842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	253750.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-16245480-1	chr14	16244980	16245980	+	1000.0	f1_balb.idr	intron (NM_001359882, intron 1 of 3)	intron (NM_001359882, intron 1 of 3)	-2149.0	NM_001359883	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	30.5	33.5	32.5	12.0	1.0	3.0
Merged-chr19-8798589-4	chr19	8798095	8799095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026329)	promoter-TSS (NM_026329)	-38.0	NM_026329	67710.0	Mm.22117	NM_026329	ENSMUSG00000071662	Polr2g	2410046K11Rik|A230108L04Rik|C76415|RBP7|Rpo2-7l	polymerase (RNA) II (DNA directed) polypeptide G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12738557-4	chr18	12738107	12739107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2748.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3682109-2	chr4	3681609	3682609	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	3988.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-59075736-4	chr19	59075236	59076236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175172, exon 1 of 15)	5' UTR (NM_175172, exon 1 of 15)	333.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71458520-2	chr6	71458020	71459020	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-17883.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25267508-4	chr7	25267017	25268017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302811)	promoter-TSS (NM_001302811)	-182.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31405906-4	chr14	31405392	31406392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	11785.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109606328-2	chr8	109605828	109606828	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_020046, exon 2 of 9)	exon (NM_020046, exon 2 of 9)	2345.0	NM_020046	56749.0	Mm.23894	NM_020046	ENSMUSG00000031730	Dhodh	2810417D19Rik|AI834883	dihydroorotate dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-3979579-4	chr15	3979066	3980066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134099)	promoter-TSS (NM_134099)	7.0	NM_134099	106052.0	Mm.234191	NM_134099	ENSMUSG00000022184	Fbxo4	1700096C12Rik|AI851261|AW494535|Fbx4	F-box protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-82799160-4	chr1	82798667	82799667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER102a|DNA|hAT-Charlie	-30711.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-115315021-4	chr10	115314534	115315534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024454, intron 1 of 6)	intron (NM_024454, intron 1 of 6)	557.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-9970893-2	chr1	9970393	9971393	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110971, intron 6 of 6)	L1ME1|LINE|L1	-3408.0	NM_001285425	100039596.0	Mm.412928	NM_001285425	ENSMUSG00000099032	Tcf24	Gm10567|Gm2330	transcription factor 24	protein-coding	1.0	0.0	0.0	8.0	0.0	0.0
Merged-chr12-85913305-4	chr12	85912813	85913813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 19 of 32)	RSINE1|SINE|B4	88363.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-73089781-4	chr9	73089275	73090275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301230, intron 6 of 6)	intron (NM_001301230, intron 6 of 6)	-12623.0	NM_025890	66991.0	Mm.471745	NM_025890	ENSMUSG00000092622	Khdc3	2410004A20Rik|AI467128|FILIA|OEEP48	KH domain containing 3, subcortical maternal complex member	protein-coding	19.5	56.0	24.5	23.0	72.5	27.5
Merged-chr17-71242538-2	chr17	71242038	71243038	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357791, intron 13 of 19)	intron (NM_001357791, intron 13 of 19)	37884.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.0	3.0	0.0	7.0	0.0	0.0
Merged-chr16-90747193-4	chr16	90746632	90747632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029844, intron 1 of 2)	intron (NM_029844, intron 1 of 2)	8808.0	NM_029844	77037.0	Mm.22455	NM_029844	ENSMUSG00000039956	Mrap	1110025G12Rik|C21ORF61|Falp|ORF61	melanocortin 2 receptor accessory protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23989566-4	chr18	23989039	23990039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011755)	promoter-TSS (NM_011755)	-95.0	NM_011755	22694.0	Mm.290596	NM_011755	ENSMUSG00000063281	Zfp35	Zfp-35|Znf271|mszf13|mszf20-1|mszf28|mszf68	zinc finger protein 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146410027-4	chr6	146409522	146410522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 9 of 56)	B3|SINE|B2	92201.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	3.5	35.0	20.0	5.0	37.0	12.5
Merged-chr14-27182322-4	chr14	27181834	27182834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	intron (NM_001289686, intron 2 of 12)	38341.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-33352551-4	chr5	33352048	33353048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021500, intron 1 of 8)	L1MB7|LINE|L1	16976.0	NM_021500	59003.0	Mm.138617	NM_021500	ENSMUSG00000079562	Maea	1110030D19Rik|EMP|Gid9	macrophage erythroblast attacher	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56831208-4	chr17	56830710	56831710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027787)	promoter-TSS (NM_027787)	-202.0	NM_027787	19725.0	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-95667677-4	chr1	95667177	95668177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009183)	promoter-TSS (NM_009183)	-83.0	NM_001159745	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135168846-4	chr5	135168346	135169346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009745, intron 1 of 5)	CpG	474.0	NM_009745	12054.0	Mm.405834	NM_009745	ENSMUSG00000029681	Bcl7b	-	B cell CLL/lymphoma 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-90483486-2	chr6	90482986	90483986	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20910.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55211066-4	chr13	55210567	55211567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008739, intron 1 of 22)	CpG	1285.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	111.5	360.0	232.0	125.0	364.0	224.5
Merged-chr10-75282856-4	chr10	75282341	75283341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153406, intron 13 of 15)	intron (NM_153406, intron 13 of 15)	-34036.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191397229-4	chr1	191396726	191397726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144880)	promoter-TSS (NM_144880)	-185.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	83.0	291.5	168.5	84.5	178.5	104.0
Merged-chr7-27537442-4	chr7	27536954	27537954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317355, intron 10 of 13)	intron (NM_001317355, intron 10 of 13)	14193.0	NM_001033315	233020.0	Mm.429716	NM_001033315	ENSMUSG00000040424	Hipk4	Gm162	homeodomain interacting protein kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97082441-4	chr7	97081940	97082940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	689.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3704200-7	chr7	3703765	3704765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029767, intron 1 of 4)	CpG	224.0	NM_029767	76846.0	Mm.13944	NM_029767	ENSMUSG00000006333	Rps9	3010033P07Rik|AL022771|AL022885	ribosomal protein S9	protein-coding	35.5	94.5	62.5	33.0	92.5	71.0
Merged-chr16-43448724-4	chr16	43448233	43449233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	-28537.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-92840011-4	chr8	92839512	92840512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008610, intron 8 of 12)	intron (NM_008610, intron 8 of 12)	12715.0	NM_008610	17390.0	Mm.29564	NM_008610	ENSMUSG00000031740	Mmp2	Clg4a|GelA|MMP-2	matrix metallopeptidase 2	protein-coding	12.5	7.0	9.0	5.0	5.5	5.0
Merged-chr7-31150689-1	chr7	31150189	31151189	+	1000.0	f0_balb.idr	intron (NR_153431, intron 1 of 18)	CpG	482.0	NM_027898	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	16.0	24.0	15.0	15.0	14.5	23.5
Merged-chr1-21166461-3	chr1	21165960	21166960	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52115.0	NM_001290679	75712.0	Mm.304763	NM_029398	ENSMUSG00000025933	Tmem14a	5730496E24Rik|C85783|PTD011	transmembrane protein 14A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20725128-4	chr10	20724650	20725650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013875)	promoter-TSS (NM_013875)	-72.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-45019620-4	chr10	45019118	45020118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47596.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-42949243-2	chr4	42948743	42949743	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355438)	promoter-TSS (NM_001355438)	-624.0	NM_001355438	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-8806789-2	chr5	8806289	8807289	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011075, intron 4 of 27)	L2|LINE|L2	-8266.0	NR_152132	330031.0	Mm.389059	NR_152132		Gm5106	A230021K14|EG330031	predicted gene 5106	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45554601-4	chr17	45554100	45555100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1100.0	NM_008690	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102282301-4	chr12	102281819	102282819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177620)	promoter-TSS (NM_177620)	-755.0	NM_177620	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-93080723-2	chr7	93080223	93081223	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_021427, exon 1 of 2)	exon (NM_021427, exon 1 of 2)	844.0	NM_021427	58238.0	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	2.5	0.0	3.0	2.5	0.0	3.5
Merged-chr9-57652558-4	chr9	57652049	57653049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 1 of 14)	intron (NM_001304761, intron 1 of 14)	1082.0	NM_001304761	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120629022-4	chr2	120628529	120629529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19434.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	21.5	64.0	48.0	15.5	74.5	47.0
Merged-chr18-37999129-1	chr18	37998629	37999629	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_001205336)	promoter-TSS (NM_001205336)	-160.0	NM_001205336	106952.0	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	7.0	21.0	26.5	14.0	28.5	23.0
Merged-chr2-94406545-4	chr2	94406034	94407034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027831)	promoter-TSS (NR_027831)	155.0	NM_183106	74569.0	Mm.248504	NM_183106	ENSMUSG00000027194	Ttc17	9130020K17Rik|D2Bwg1005e	tetratricopeptide repeat domain 17	protein-coding	20.5	36.0	31.5	15.0	52.0	22.5
Merged-chr2-30093838-4	chr2	30093359	30094359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025428)	promoter-TSS (NM_025428)	-224.0	NM_001037762	66220.0	Mm.22538	NM_025428	ENSMUSG00000015335	Zdhhc12	1190004A01Rik	zinc finger, DHHC domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104442176-4	chr3	104441705	104442705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69713.0	NM_001025067	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	4.0	22.5	16.0	0.0	26.0	13.5
Merged-chr11-97659191-4	chr11	97658685	97659685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4227.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	111.5	243.5	151.5	92.5	255.0	144.0
Merged-chr10-99181717-4	chr10	99181220	99182220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	73585.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21170937-2	chr9	21170437	21171437	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183408, intron 1 of 14)	B4|SINE|B4	5223.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87961035-4	chr3	87960540	87961540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10053.0	NM_016701	18008.0	Mm.331129	NM_016701	ENSMUSG00000004891	Nes	AA166324|C78523|ESTM46|Ifaprc2|Marc2|RC2	nestin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-51480623-4	chr1	51480117	51481117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2218.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	4.5	9.0	9.5	0.5	4.5	3.0
Merged-chr1-65186585-4	chr1	65186105	65187105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111320)	promoter-TSS (NM_001111320)	-80.0	NM_001310624	18711.0	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE type zinc finger containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33642351-2	chr2	33641851	33642851	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_046275, exon 3 of 3)	non-coding (NR_046275, exon 3 of 3)	1158.0	NR_046275	100504399.0	Mm.72070	NM_177842		C130021I20Rik	-	Riken cDNA C130021I20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5935035-4	chr17	5934529	5935529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6251.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101134533-4	chr15	101134033	101135033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277255, intron 3 of 11)	intron (NM_001277255, intron 3 of 11)	6011.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	39.0	131.0	39.0	33.5	83.5	39.0
Merged-chr11-106487014-2	chr11	106486514	106487514	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 1 of 21)	intron (NM_023913, intron 1 of 21)	782.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80093012-2	chr15	80092512	80093512	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207708, intron 1 of 3)	intron (NM_207708, intron 1 of 3)	1678.0	NM_207708	20972.0	Mm.230301	NM_009303	ENSMUSG00000022415	Syngr1	R75468|Syngr1b|p29	synaptogyrin 1	protein-coding	0.0	0.0	1.0	0.0	0.0	5.0
Merged-chr11-32349814-4	chr11	32349319	32350319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177364, intron 1 of 12)	intron (NM_177364, intron 1 of 12)	2008.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101742204-4	chr4	101741726	101742726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146146, intron 4 of 18)	intron (NM_146146, intron 4 of 18)	24819.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	220.5	516.5	397.0	114.5	214.0	172.5
Merged-chr12-80790453-4	chr12	80789944	80790944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178682)	promoter-TSS (NM_178682)	-88.0	NM_178682	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-72810129-4	chr15	72809679	72810679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_002864, exon 1 of 1)	non-coding (NR_002864, exon 1 of 1)	145.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	19.0	52.5	35.0	18.0	40.5	14.0
Merged-chr9-21033322-4	chr9	21032804	21033804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035438)	promoter-TSS (NR_035438)	-976.0	NR_035438	100316681.0		NR_035438	ENSMUSG00000084663	Mir1900	Mirn1900|mmu-mir-1900	microRNA 1900	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31095007-4	chr3	31094532	31095532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011386)	promoter-TSS (NM_011386)	-26.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115847210-4	chr6	115846711	115847711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010774, intron 3 of 7)	B3A|SINE|B2	6130.0	NM_010774	17193.0	Mm.259308	NM_010774	ENSMUSG00000030322	Mbd4	Med1	methyl-CpG binding domain protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80342939-4	chr10	80342416	80343416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001285435, exon 8 of 13)	exon (NM_001285435, exon 8 of 13)	5532.0	NM_001285435	66548.0	Mm.71891	NM_025629	ENSMUSG00000043822	Adamtsl5	2010109H09Rik|Thsd6	ADAMTS-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111442560-4	chr12	111442063	111443063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009396)	promoter-TSS (NM_009396)	-98.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100566974-4	chr5	100566467	100567467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139198, intron 1 of 4)	intron (NM_139198, intron 1 of 4)	5238.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	13.5	67.0	41.0	14.0	43.0	29.5
Merged-chr9-65534151-2	chr9	65533651	65534651	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45936.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4202582-4	chr11	4202081	4203081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	B3|SINE|B2	-15670.0	NM_028022	71962.0	Mm.7852	NM_028022	ENSMUSG00000020424	Gatsl3	2410008K03Rik|Castor1	GATS protein-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122678774-4	chr10	122678229	122679229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106182)	promoter-TSS (NR_106182)	-33.0	NM_176919	319468.0	Mm.489703	NM_176919	ENSMUSG00000034613	Ppm1h	A430075L18Rik|ARHCL1|C030002B11Rik	protein phosphatase 1H (PP2C domain containing)	protein-coding	31.0	63.0	96.5	57.0	79.5	94.0
Merged-chr2-155826703-4	chr2	155826200	155827200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010579, exon 1 of 6)	5' UTR (NM_010579, exon 1 of 6)	225.0	NM_010579	16418.0	Mm.271674	NM_010579	ENSMUSG00000027613	Eif6	1110004P11|AA408895|CAB|Itgb4bp|eIF-6|imc-415|p27(BBP)|p27BBP	eukaryotic translation initiation factor 6	protein-coding	91.5	249.0	172.0	52.5	136.0	147.0
Merged-chr3-121330381-4	chr3	121329867	121330867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155539, intron 2 of 2)	intron (NR_155539, intron 2 of 2)	38627.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	9.5	12.0	8.5	6.0	2.0	9.0
Merged-chr18-66478318-4	chr18	66477839	66478839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19735.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81402324-1	chr10	81401824	81402824	+	1000.0	f0_balb.idr	intron (NM_026756, intron 8 of 8)	intron (NM_026756, intron 8 of 8)	-7251.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155412910-4	chr1	155412417	155413417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011273, intron 1 of 14)	intron (NM_011273, intron 1 of 14)	4527.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-66444384-4	chr8	66443898	66444898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 6 of 7)	intron (NM_175188, intron 6 of 7)	42132.0	NM_025465	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65493393-4	chr5	65492882	65493882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133697)	promoter-TSS (NM_133697)	-547.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167717428-4	chr2	167716971	167717971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26294.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142342374-4	chr7	142341870	142342870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177265, intron 3 of 3)	L1MB3|LINE|L1	29889.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	27.5	78.0	51.0	0.0	10.0	3.0
Merged-chr11-106273047-4	chr11	106272538	106273538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130187)	promoter-TSS (NM_001130187)	-66.0	NM_001130187	83796.0	Mm.21772	NM_031878	ENSMUSG00000078619	Smarcd2	AW322457|Baf60b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-97302106-1	chr13	97301606	97302606	+	1000.0	f0_balb.idr	Intergenic	Intergenic	61001.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25473167-4	chr14	25472720	25473720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	14035.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117126208-4	chr4	117125708	117126708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175030)	promoter-TSS (NM_175030)	-483.0	NR_024078	78611.0	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	259.5	591.0	408.0	276.0	504.0	380.5
Merged-chr19-8984570-4	chr19	8984084	8985084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4700.0	NR_104460	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	10.0	28.0	16.5	25.5	19.5	9.0
Merged-chr2-122154085-4	chr2	122153605	122154605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026251, intron 2 of 17)	intron (NM_026251, intron 2 of 17)	6418.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	15.5	54.0	31.5	24.5	52.5	22.0
Merged-chr4-147809799-4	chr4	147809303	147810303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127189)	promoter-TSS (NM_001127189)	-15.0	NM_001127189	100041677.0	Mm.327194	NM_001127189	ENSMUSG00000078495	Zfp984	Gm13157	zinc finger protein 984	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-16983336-4	chr16	16982838	16983838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011949)	promoter-TSS (NM_011949)	-44.0	NM_001357115	26413.0	Mm.196581	NM_011949	ENSMUSG00000063358	Mapk1	9030612K14Rik|AA407128|AU018647|C78273|ERK|Erk2|MAPK2|PRKM2|Prkm1|p41mapk|p42mapk	mitogen-activated protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64199047-4	chr1	64198537	64199537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77648.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30672118-4	chr14	30671599	30672599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177815, intron 6 of 12)	intron (NM_177815, intron 6 of 12)	17724.0	NM_177815	328370.0	Mm.259657	NM_177815	ENSMUSG00000052395	Rft1	D930025H04	RFT1 homolog	protein-coding	59.5	79.0	63.0	57.0	72.5	62.0
Merged-chr11-69991003-4	chr11	69990511	69991511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019749)	promoter-TSS (NM_019749)	-359.0	NM_019749	56486.0	Mm.272460	NM_019749	ENSMUSG00000018567	Gabarap	-	gamma-aminobutyric acid receptor associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-150216262-4	chr5	150215772	150216772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43658.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	9.5	2.0	7.0	0.0	9.0	0.5
Merged-chr10-81351872-2	chr10	81351372	81352372	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1415.0	NM_001163166	15353.0	Mm.38474	NM_010440	ENSMUSG00000020232	Hmg20b	AW610687|BRAF35|Hmgx2|Hmgxb2|Smarce1r	high mobility group 20B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84247930-2	chr8	84247404	84248404	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001007571, intron 2 of 2)	PB1D9|SINE|Alu	1857.0	NM_001007571	101966.0	Mm.200723	NM_001007571	ENSMUSG00000019362	D8Ertd738e	AA589584	DNA segment, Chr 8, ERATO Doi 738, expressed	protein-coding	7.0	17.0	3.0	5.5	2.0	6.5
Merged-chr17-27025489-4	chr17	27024984	27025984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001251881, intron 2 of 6)	intron (NM_001251881, intron 2 of 6)	3143.0	NM_007523	12018.0	Mm.2443	NM_007523	ENSMUSG00000057789	Bak1	Bak|N-BAK1|N-Bak	BCL2-antagonist/killer 1	protein-coding	22.0	92.0	52.0	56.5	119.0	108.0
Merged-chr3-41412885-4	chr3	41412385	41413385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80314.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46397786-2	chr19	46397286	46398286	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 1 of 11)	intron (NM_001025391, intron 1 of 11)	890.0	NM_015752	24069.0	Mm.41210	NM_015752	ENSMUSG00000025231	Sufu	Su(fu)	SUFU negative regulator of hedgehog signaling	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31123116-4	chr6	31122611	31123611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	ORR1F|LTR|ERVL-MaLR	-60018.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-43655412-4	chr16	43654924	43655924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146325, intron 3 of 3)	intron (NM_001146325, intron 3 of 3)	8760.0	NM_001146325	100043314.0	Mm.390896	NM_001146325	ENSMUSG00000071552	Tigit	Vstm3	T cell immunoreceptor with Ig and ITIM domains	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10543123-4	chr16	10542610	10543610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021428)	promoter-TSS (NM_021428)	-56.0	NM_021428	58239.0	Mm.353006	NM_021428	ENSMUSG00000038055	Dexi	1810029J14Rik|AI836170|AW413143|D16Bwg0586e|Myle	dexamethasone-induced transcript	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63109466-4	chr9	63108963	63109963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37517.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-48625662-4	chr13	48625158	48626158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301781)	promoter-TSS (NM_001301781)	14.0	NM_207232	218232.0	Mm.315089	NM_207232	ENSMUSG00000038042	Ptpdc1	AI843923|AW456874|Naa-1|Ptpcd1	protein tyrosine phosphatase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78773533-4	chr15	78773036	78774036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008595)	promoter-TSS (NM_008595)	-91.0	NM_008595	17305.0	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	22.0	14.0	18.5	19.5	27.0	12.0
Merged-chr10-68277016-4	chr10	68276520	68277520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	CpG	1706.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	71.0	227.0	191.5	100.0	275.5	175.0
Merged-chr7-25395714-4	chr7	25395247	25396247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_073027, exon 2 of 6)	non-coding (NR_073027, exon 2 of 6)	240.0	NM_010719	16890.0	Mm.158548	NM_010719	ENSMUSG00000003123	Lipe	4933403G17Rik|HSL	lipase, hormone sensitive	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32554193-4	chr11	32553708	32554708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	URR1B|DNA|hAT-Charlie	20942.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	52.5	100.5	99.0	53.0	107.5	95.0
Merged-chr14-63133797-2	chr14	63133297	63134297	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 2 of 9)	intron (NM_007798, intron 2 of 9)	11335.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	7.0	0.0	2.0	4.5	16.0	4.0
Merged-chr10-13968101-4	chr10	13967554	13968554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	1675.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	24.0	26.5	23.0	6.5	31.0	17.0
Merged-chr10-66852892-4	chr10	66852409	66853409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67475.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45176486-3	chr19	45175990	45176990	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25775.0	NM_021901	21908.0	Mm.391203	NM_021901	ENSMUSG00000025215	Tlx1	Hox-11|Hox11|Tlx-1	T cell leukemia, homeobox 1	protein-coding	15.5	27.0	11.0	4.5	11.5	8.5
Merged-chr5-99252948-4	chr5	99252441	99253441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145839)	promoter-TSS (NM_145839)	-14.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77265560-2	chr10	77265060	77266060	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030262, intron 5 of 8)	intron (NM_030262, intron 5 of 8)	6260.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69695162-2	chr11	69694662	69695662	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011614, intron 2 of 6)	intron (NM_011614, intron 2 of 6)	936.0	NM_011614	21944.0	Mm.8983	NM_011614	ENSMUSG00000097328	Tnfsf12	Apo3l|Dr3l|Dr3lg|Tweak	tumor necrosis factor (ligand) superfamily, member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-62770792-4	chr1	62770271	62771271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 11 of 16)	intron (NM_001077404, intron 11 of 16)	23961.0	NR_040601	74992.0	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76380409-4	chr15	76379909	76380909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175457)	promoter-TSS (NM_175457)	-104.0	NM_175457	223658.0	Mm.123240	NM_175457	ENSMUSG00000022558	Mroh1	D330001F17Rik|Heatr7a	maestro heat-like repeat family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25619385-4	chr7	25618871	25619871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025504)	promoter-TSS (NM_025504)	-43.0	NM_001290487	66349.0	Mm.159956	NM_025504	ENSMUSG00000057229	Dmac2	2310004L02Rik|Atp5sl|C030044E10Rik	distal membrane arm assembly complex 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36801816-4	chr18	36801315	36802315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027885)	promoter-TSS (NR_027885)	52.0	NR_027885	378472.0	Mm.482379	NR_027885		Vaultrc5	Gm22653|Mvg1	vault RNA component 5	ncRNA	75.0	100.0	97.0	64.0	129.5	119.0
Merged-chr9-35278080-4	chr9	35277578	35278578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-3027.0	NR_040715	71133.0	Mm.158577	NR_040715	ENSMUSG00000111746	4933422A05Rik	-	RIKEN cDNA 4933422A05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11770386-4	chr19	11769872	11770872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025606)	promoter-TSS (NM_025606)	-43.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	5.5	16.0	11.0	5.5	12.5	9.5
Merged-chr13-112785185-4	chr13	112784684	112785684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15593.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58732197-4	chr15	58731703	58732703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	91224.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45006550-4	chr19	45006065	45007065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153796)	promoter-TSS (NM_153796)	7.0	NM_153796	226153.0	Mm.105585	NM_153796	ENSMUSG00000025209	Twnk	D19Ertd626e|PEO|Peo1|Twinl	twinkle mtDNA helicase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131276003-2	chr1	131275503	131276503	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019777, intron 3 of 21)	intron (NM_019777, intron 3 of 21)	3560.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136142921-4	chr4	136142445	136143445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008321)	promoter-TSS (NM_008321)	-877.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	33.0	107.0	61.5	29.5	87.0	38.0
Merged-chr2-84735697-2	chr2	84735197	84736197	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005342, intron 1 of 4)	intron (NM_001005342, intron 1 of 4)	1493.0	NM_001005342	241525.0	Mm.486398	NM_001005342	ENSMUSG00000034059	Ypel4	-	yippee like 4	protein-coding	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr1-38012315-4	chr1	38011800	38012800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198303, intron 1 of 23)	intron (NM_198303, intron 1 of 23)	14290.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-3909040-4	chr16	3908564	3909564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029738)	promoter-TSS (NM_029738)	55.0	NM_029738	76779.0	Mm.458921	NM_029738	ENSMUSG00000014232	Cluap1	2310030D15Rik|2610111M03Rik	clusterin associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19501135-4	chr7	19500636	19501636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	7195.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	20.0	29.5	16.0	29.0	24.5	10.5
Merged-chr13-84022694-2	chr13	84022194	84023194	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	42080.0	NR_131220	553095.0	Mm.39702	NR_131220	ENSMUSG00000098087	Gm17750	-	predicted gene, 17750	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-31963955-4	chr4	31963467	31964467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172688)	promoter-TSS (NM_172688)	-140.0	NM_009316	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	63.5	148.0	156.5	51.0	104.5	131.5
Merged-chr12-75818794-3	chr12	75818300	75819300	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005510, intron 1 of 115)	CpG	482.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-40681906-2	chr14	40681406	40682406	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	211059.0	NM_177816	328381.0	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77921858-2	chr9	77921358	77922358	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134255, intron 1 of 7)	intron (NM_134255, intron 1 of 7)	4493.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43327955-4	chr17	43327474	43328474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-32457.0	NM_001357332	224792.0	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	24.5	31.0	37.0	18.0	27.5	33.0
Merged-chr7-92832616-4	chr7	92832120	92833120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029494, intron 4 of 4)	Lx6|LINE|L1	41627.0	NM_001355126	74041.0	Mm.26468	NM_028729	ENSMUSG00000030641	Ddias	4632434I11Rik|noxin	DNA damage-induced apoptosis suppressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-56075427-4	chr16	56074922	56075922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025483)	promoter-TSS (NM_025483)	18.0	NM_001003973	66315.0	Mm.255784	NM_025483	ENSMUSG00000052917	Senp7	2410152H17Rik|2810413I22Rik|2900036C23Rik|6030449K19Rik|AI790676	SUMO1/sentrin specific peptidase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-104244430-4	chr7	104243930	104244930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357679)	promoter-TSS (NM_001357679)	-27.0	NM_001357679	94094.0	Mm.326945	NM_030684	ENSMUSG00000056144	Trim34a	Trim34|Trim34-1	tripartite motif-containing 34A	protein-coding	11.5	18.0	16.0	16.0	25.5	16.0
Merged-chr11-5290922-2	chr11	5290422	5291422	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080924, intron 2 of 8)	intron (NM_001080924, intron 2 of 8)	-29312.0	NM_032396	84035.0	Mm.209989	NM_032396	ENSMUSG00000020393	Kremen1	AV002070|Kremen|Krm1	kringle containing transmembrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-104047665-2	chr5	104047165	104048165	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_049192)	promoter-TSS (NR_049192)	-338.0	NR_049192	100885831.0		NR_049192	ENSMUSG00000093690	Mir5619	Gm23866|mir-5619|mmu-mir-5619	microRNA 5619	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96065385-4	chr11	96064866	96065866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172300)	promoter-TSS (NM_172300)	-2.0	NM_172300	268470.0	Mm.38802	NM_172300	ENSMUSG00000014349	Ube2z	AW049199|C030047H17Rik|D11Moh35	ubiquitin-conjugating enzyme E2Z	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94960203-4	chr10	94959706	94960706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15628.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-10453527-3	chr14	10453000	10454000	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308286)	promoter-TSS (NM_001308286)	-42.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-39644749-4	chr8	39644237	39645237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2059.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	39.0	132.0	81.5	69.5	94.5	83.5
Merged-chr8-22166405-4	chr8	22165938	22166938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011848)	promoter-TSS (NM_011848)	-3.0	NM_011848	23954.0	Mm.41413	NM_011848	ENSMUSG00000031478	Nek3	-	NIMA (never in mitosis gene a)-related expressed kinase 3	protein-coding	0.0	1.0	2.0	0.0	0.0	3.5
Merged-chr5-38220469-4	chr5	38219975	38220975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025281)	promoter-TSS (NM_025281)	-7.0	NM_025281	17089.0	Mm.28560	NM_025281	ENSMUSG00000067367	Lyar	MLZ-264	Ly1 antibody reactive clone	protein-coding	3.5	0.0	2.5	0.0	3.5	0.5
Merged-chr11-101467622-4	chr11	101467131	101468131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009708)	promoter-TSS (NM_009708)	-544.0	NM_009708	11858.0	Mm.378883	NM_009708	ENSMUSG00000001313	Rnd2	Arhn|Rohn|rho7	Rho family GTPase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53265078-4	chr18	53264592	53265592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	RLTR30D2_MM|LTR|ERV1	19430.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	24.0	68.5	74.0	40.0	83.5	67.5
Merged-chr8-107031265-4	chr8	107030799	107031799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_126165)	promoter-TSS (NM_126165)	-27.0	NM_126165	116733.0	Mm.236004	NM_126165	ENSMUSG00000031913	Vps4a	4930589C15Rik|AI325971|AW553189	vacuolar protein sorting 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57157522-2	chr9	57157022	57158022	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025417, intron 1 of 7)	intron (NM_025417, intron 1 of 7)	777.0	NM_025417	66199.0	Mm.41687	NM_025417	ENSMUSG00000032299	Commd4	1110039H05Rik	COMM domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56765076-6	chr17	56764547	56765547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360405, intron 1 of 11)	CpG	296.0	NM_144858	224907.0	Mm.293973	NM_144858	ENSMUSG00000007603	Dus3l	AI662135|AW557805	dihydrouridine synthase 3-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170795965-4	chr1	170795468	170796468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 10 of 15)	intron (NM_001081304, intron 10 of 15)	71803.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27591011-2	chr7	27590511	27591511	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110208)	promoter-TSS (NM_001110208)	-541.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4961144-2	chr16	4960644	4961644	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028301, intron 1 of 16)	B3A|SINE|B2	3093.0	NM_028301	72615.0	Mm.290628	NM_028301	ENSMUSG00000022515	Anks3	2700067D09Rik|C81345|mKIAA1977	ankyrin repeat and sterile alpha motif domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56075067-4	chr17	56074555	56075555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_024432, exon 2 of 12)	5' UTR (NM_024432, exon 2 of 12)	4278.0	NM_024432	66530.0	Mm.28000	NM_024432	ENSMUSG00000019578	Ubxn6	1200008L11Rik|2210415J11Rik|AU040909|Ubxd1|Ubxdc2	UBX domain protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-78510393-4	chr8	78509891	78510891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104094, intron 1 of 9)	intron (NR_104094, intron 1 of 9)	1063.0	NM_001282108	76775.0	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128373064-2	chr2	128372564	128373564	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	56287.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	42.0	154.0	68.5	32.0	116.0	97.5
Merged-chr18-77865609-4	chr18	77865113	77866113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 6 of 14)	intron (NM_013831, intron 6 of 14)	-69223.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	2.5	17.0	3.0	2.5	17.5	3.0
Merged-chr18-10610276-4	chr18	10609788	10610788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081222)	promoter-TSS (NM_001081222)	64.0	NM_001081222	77805.0	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	17.0	21.0	19.5	0.5	15.5	17.5
Merged-chr6-66896799-1	chr6	66896299	66897299	+	1000.0	f0_balb.idr	promoter-TSS (NM_001177558)	promoter-TSS (NM_001177558)	-92.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-54585403-4	chr1	54584909	54585909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27725.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	6.0	9.0	16.5	5.5	25.0	22.0
Merged-chr13-111936147-4	chr13	111935641	111936641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68205.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49994645-4	chr11	49994128	49995128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30703.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122561393-4	chr8	122560889	122561889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6626.0	NM_026014	67177.0	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	72.0	264.0	151.5	72.5	108.0	68.5
Merged-chr4-72199145-4	chr4	72198665	72199665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285530, intron 2 of 17)	intron (NM_001285530, intron 2 of 17)	1728.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100545622-4	chr11	100545092	100546092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028918)	promoter-TSS (NM_028918)	-40.0	NM_028918	74407.0	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60803723-4	chr18	60803223	60804223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010545)	promoter-TSS (NM_010545)	-126.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	170.0	375.5	262.5	173.5	538.0	283.0
Merged-chr7-112225798-4	chr7	112225321	112226321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177282)	promoter-TSS (NM_177282)	-15.0	NM_177282	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	2.5	0.5	2.5	0.0	9.0	3.5
Merged-chr6-122308766-4	chr6	122308247	122309247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010749)	promoter-TSS (NM_010749)	27.0	NM_010749	17113.0	Mm.249225	NM_010749	ENSMUSG00000007458	M6pr	CD-MPR|Mpr46	mannose-6-phosphate receptor, cation dependent	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6323320-4	chr2	6322799	6323799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080548, intron 1 of 14)	CpG	542.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106157851-2	chr11	106157351	106158351	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001356459, exon 5 of 5)	3' UTR (NM_001356459, exon 5 of 5)	2076.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65318907-2	chr3	65318407	65319407	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357358, intron 7 of 13)	intron (NM_001357358, intron 7 of 13)	-16222.0	NR_126080	102637797.0	Mm.446731	NR_126080	ENSMUSG00000104093	A330015K06Rik	-	RIKEN cDNA A330015K06 gene	ncRNA	1.5	3.5	2.0	0.0	0.0	1.0
Merged-chr4-88722440-5	chr4	88721881	88722881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172871, exon 1 of 1)	5' UTR (NM_172871, exon 1 of 1)	127.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117509754-4	chr5	117509257	117510257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 3 of 19)	intron (NM_001312914, intron 3 of 19)	95755.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0.0	0.0	7.0	3.0	6.0	7.0
Merged-chr10-70224803-4	chr10	70224327	70225327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20163.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71559102-4	chr8	71558600	71559600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001100462)	promoter-TSS (NM_001100462)	-229.0	NM_001100462	434325.0	Mm.33613	NM_001100462	ENSMUSG00000043664	Tmem221	-	transmembrane protein 221	protein-coding	47.5	53.5	46.5	26.5	61.5	21.5
Merged-chr13-119812083-2	chr13	119811583	119812583	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18134.0	NM_001001449	380878.0	Mm.327311	NM_001001449	ENSMUSG00000094237	AF067063	-	cDNA sequence AF067063	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-8677394-1	chr13	8676894	8677894	+	1000.0	f0_balb.idr	intron (NR_110345, intron 4 of 10)	intron (NR_110345, intron 4 of 10)	193650.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-110970360-4	chr8	110969836	110970836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009179, exon 7 of 7)	3' UTR (NM_009179, exon 7 of 7)	27487.0	NM_007916	13680.0	Mm.287901	NM_007916	ENSMUSG00000015023	Ddx19a	DBP5|Ddx19|Eif4a-rs1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a	protein-coding	22.5	52.5	33.0	11.5	59.5	50.5
Merged-chr6-87518804-4	chr6	87518327	87519327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	14432.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	5.5	20.0	40.5	13.5	30.0	34.0
Merged-chr2-170511322-5	chr2	170510881	170511881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040367, exon 1 of 3)	non-coding (NR_040367, exon 1 of 3)	151.0	NM_001199902	109054.0	Mm.28808	NM_001013369	ENSMUSG00000052033	Pfdn4	0610025M10Rik|1810063B06Rik|C-1|C1|Pfd4	prefoldin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96709220-4	chr15	96708728	96709728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9500.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-86804692-4	chr5	86804184	86805184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177680, intron 1 of 16)	CpG	418.0	NM_001359907	231386.0	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27650298-4	chr3	27649813	27650813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173182, intron 1 of 25)	intron (NM_173182, intron 1 of 25)	60139.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-80739671-4	chr8	80739166	80740166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053124)	promoter-TSS (NM_053124)	-207.0	NM_053124	93762.0	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57358584-4	chr17	57358095	57359095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355723)	promoter-TSS (NM_001355723)	-91.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-52418090-4	chr10	52417586	52418586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030250, exon 1 of 5)	exon (NM_030250, exon 1 of 5)	539.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95575109-4	chr9	95574613	95575613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15296.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	14.5	58.0	37.5	14.5	58.5	38.5
Merged-chr14-73385333-4	chr14	73384845	73385845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008410)	promoter-TSS (NM_008410)	-56.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117519784-1	chr8	117519284	117520284	+	1000.0	f1_c57bl6.idr	intron (NM_172285, intron 2 of 32)	intron (NM_172285, intron 2 of 32)	21509.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83892019-4	chr7	83891522	83892522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023403)	promoter-TSS (NM_023403)	22.0	NM_023403	67943.0	Mm.117365	NM_023403	ENSMUSG00000038503	Mesd	2210015O11Rik|AW537813|Mesdc2|mKIAA0081|mesd|msd	mesoderm development LRP chaperone	protein-coding	28.0	64.0	56.5	40.5	94.5	33.0
Merged-chr9-21798052-2	chr9	21797552	21798552	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145611, intron 1 of 11)	intron (NM_145611, intron 1 of 11)	494.0	NM_145611	235041.0	Mm.257371	NM_145611	ENSMUSG00000032194	Kank2	AI504612|Ankrd25|BC010245	KN motif and ankyrin repeat domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-3744038-4	chr16	3743531	3744531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148924)	promoter-TSS (NM_148924)	-68.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35540696-2	chr8	35540186	35541186	+	1000.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45153.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	28.5	35.5	49.0	5.0	2.0	1.5
Merged-chr7-45866208-4	chr7	45865721	45866721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008172, exon 1 of 12)	exon (NM_008172, exon 1 of 12)	460.0	NM_008172	14814.0	Mm.322594	NM_008172	ENSMUSG00000002771	Grin2d	GluN2D|NMDAR2D|NR2D	glutamate receptor, ionotropic, NMDA2D (epsilon 4)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45461007-4	chr7	45460509	45461509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007527)	TTS (NM_007527)	-1123.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104937918-4	chr3	104937442	104938442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	23767.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8195823-4	chr17	8195302	8196302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001197046, exon 13 of 13)	3' UTR (NM_001197046, exon 13 of 13)	30284.0	NM_201230	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62828902-4	chr9	62828389	62829389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9898.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36275866-2	chr1	36275366	36276366	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-2441.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91515923-4	chr6	91515431	91516431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026309)	promoter-TSS (NM_026309)	-43.0	NM_009531	22591.0	Mm.2806	NM_009531	ENSMUSG00000030094	Xpc	-	xeroderma pigmentosum, complementation group C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-86886611-4	chr10	86886136	86887136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 42 of 68)	intron (NM_138673, intron 42 of 68)	107631.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34459712-4	chr1	34459217	34460217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011206)	promoter-TSS (NM_011206)	-29.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20401796-4	chr16	20401283	20402283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176839, intron 6 of 6)	intron (NM_176839, intron 6 of 6)	24611.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-67430069-4	chr3	67429511	67430511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138591)	promoter-TSS (NM_138591)	-104.0	NM_138591	28030.0	Mm.122466	NM_138591	ENSMUSG00000027774	Gfm1	AW545374|D3Wsu133e|Gfm	G elongation factor, mitochondrial 1	protein-coding	8.0	13.0	16.5	32.0	30.0	22.0
Merged-chr2-38998108-4	chr2	38997637	38998637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029687)	promoter-TSS (NM_029687)	-172.0	NM_029687	76646.0	Mm.358777	NM_029687	ENSMUSG00000035295	Wdr38	1700123D08Rik	WD repeat domain 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16305464-1	chr7	16304964	16305964	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-4119.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0.0	0.0	12.5	11.5	2.0	0.5
Merged-chr15-5446582-4	chr15	5446083	5447083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49735.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94206084-4	chr16	94205595	94206595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 6 of 10)	intron (NM_001360045, intron 6 of 10)	84196.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60619816-4	chr13	60619325	60620325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	17614.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35978759-4	chr2	35978270	35979270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029774, intron 1 of 9)	intron (NM_029774, intron 1 of 9)	854.0	NM_029774	74410.0	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29526323-4	chr11	29525786	29526786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133767)	promoter-TSS (NM_133767)	-111.0	NM_001282120	76784.0	Mm.285429	NM_133767	ENSMUSG00000020459	Mtif2	2310038D14Rik|2410112O06Rik|IF-2(Mt)|IF-2mt|IF2(mt)	mitochondrial translational initiation factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97158757-4	chr3	97158264	97159264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019800)	promoter-TSS (NM_019800)	-13.0	NM_019800	66659.0	Mm.101368	NM_019800	ENSMUSG00000028093	Acp6	5730559A09Rik|ACPL1|AU022842|mPACPL1	acid phosphatase 6, lysophosphatidic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97155302-4	chr7	97154786	97155786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	73535.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	28.0	65.0	28.5	14.5	48.0	51.5
Merged-chr8-120682882-4	chr8	120682394	120683394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14574.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24736517-4	chr17	24736022	24737022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346668)	promoter-TSS (NM_001346668)	-71.0	NM_013759	27361.0	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	7.5	0.0	2.0	5.0	3.5	8.0
Merged-chr17-78308239-2	chr17	78307739	78308739	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 5 of 16)	intron (NM_015800, intron 5 of 16)	107991.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-82828518-2	chr7	82828018	82829018	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38815.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	0.0	2.0	2.5	0.0	0.0	2.0
Merged-chr17-84626478-4	chr17	84625976	84626976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172256)	promoter-TSS (NM_172256)	-23.0	NM_172256	213575.0	Mm.246119	NM_172256	ENSMUSG00000024253	Dync2li1	4933404O11Rik|CGI-60|D2lic|LIC3|mD2LIC	dynein cytoplasmic 2 light intermediate chain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107778165-4	chr3	107777635	107778635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17666.0	NM_001113529	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	4.5	0.0	0.0	0.0	3.0	8.5
Merged-chr10-10120671-4	chr10	10120161	10121161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-219621.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-145114763-4	chr5	145114273	145115273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023142, intron 1 of 9)	CpG	517.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-100504538-4	chr9	100504041	100505041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010878, intron 2 of 3)	L3|LINE|CR1	2315.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	28.5	75.0	88.5	60.5	92.0	83.0
Merged-chr17-33640176-7	chr17	33639604	33640604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028279, intron 1 of 9)	intron (NR_028279, intron 1 of 9)	2009.0	NR_028279	378460.0	Mm.272606	NM_001002842	ENSMUSG00000032739	Pram1	AY665714	PML-RAR alpha-regulated adaptor molecule 1	protein-coding	82.0	149.5	149.5	60.5	100.0	115.0
Merged-chr7-126725325-4	chr7	126724802	126725802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-20486.0	NM_009898	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180405725-4	chr1	180405117	180406117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-75068.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-5308174-4	chr9	5307673	5308673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007609)	promoter-TSS (NM_007609)	-676.0	NM_007609	12363.0	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98512497-2	chr15	98511997	98512997	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	7337.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21992560-4	chr10	21992082	21993082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161849, intron 1 of 11)	intron (NM_001161849, intron 1 of 11)	359.0	NM_001161849	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	88.5	165.0	152.0	89.0	222.0	163.5
Merged-chr3-83863140-4	chr3	83862647	83863647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21539.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	90.5	243.0	156.5	72.5	202.5	142.5
Merged-chr6-31109007-4	chr6	31108503	31109503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-45910.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66812446-4	chr14	66811946	66812946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009955, intron 11 of 13)	intron (NM_009955, intron 11 of 13)	56154.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61146364-4	chr10	61145853	61146853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316674, intron 1 of 14)	CpG	1331.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99883511-4	chr12	99883018	99884018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028354)	promoter-TSS (NM_028354)	-76.0	NM_030172	78767.0	Mm.235920	NM_030172	ENSMUSG00000021176	Efcab11	2610021K21Rik|2610110A13Rik	EF-hand calcium binding domain 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93478569-2	chr2	93478069	93479069	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15619.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146659059-2	chr3	146658559	146659559	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7742.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-67884888-4	chr14	67884387	67885387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177780, intron 1 of 51)	intron (NM_177780, intron 1 of 51)	-25142.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	93.5	136.5	127.5	41.0	137.5	96.5
Merged-chr12-4843955-4	chr12	4843450	4844450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170858, intron 1 of 3)	(TG)n|Simple_repeat|Simple_repeat	647.0	NM_001170858	238037.0	Mm.146087	NM_173416	ENSMUSG00000051721	Wdcp	A430092C04	WD repeat and coiled coil containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134195465-2	chr1	134194965	134195965	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357515, intron 3 of 10)	intron (NM_001357515, intron 3 of 10)	2017.0	NM_016749	53311.0	Mm.379067	NM_016749	ENSMUSG00000042451	Mybph	AI385643|MyBP-H	myosin binding protein H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-107552450-4	chr8	107551943	107552943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025830, intron 17 of 23)	intron (NM_025830, intron 17 of 23)	1199.0	NR_029553	387158.0		NR_029553	ENSMUSG00000065439	Mir140	Mirn140|mir-140|mmu-mir-140	microRNA 140	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-17414721-1	chr14	17414221	17415221	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-246239.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7332040-4	chr9	7331559	7332559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12338.0	NM_001320077	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61415992-2	chr14	61415496	61416496	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008466, intron 1 of 16)	MTA_Mm|LTR|ERVL-MaLR	23951.0	NM_008466	16648.0	Mm.25548	NM_008466	ENSMUSG00000021929	Kpna3	IPOA4	karyopherin (importin) alpha 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-49452108-4	chr2	49451601	49452601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172663, intron 1 of 13)	CpG	615.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107831364-4	chr13	107830830	107831830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	58734.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	18.5	23.5	28.0	6.0	33.0	17.0
Merged-chr5-21056179-4	chr5	21055694	21056694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356591)	promoter-TSS (NM_001356591)	-283.0	NM_011203	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43570638-4	chr17	43570144	43571144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	2193.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	7.0	16.0	7.0	3.0	15.0	4.0
Merged-chr10-118012146-4	chr10	118011665	118012665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86706.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	9.0	31.5	21.5	4.5	19.0	23.0
Merged-chr17-29093728-4	chr17	29093241	29094241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007669)	promoter-TSS (NM_007669)	-28.0	NM_007669	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3871877-4	chr12	3871369	3872369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 4 of 22)	intron (NM_007872, intron 4 of 22)	-9625.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39120303-4	chr6	39119766	39120766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045813, intron 1 of 3)	RMER16|LTR|ERVK	1793.0	NR_045813	75379.0	Mm.348014	NR_045813	ENSMUSG00000073144	4930599N23Rik	-	RIKEN cDNA 4930599N23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46834008-1	chr11	46833508	46834508	+	1000.0	f1_balb.idr	intron (NM_178759, intron 5 of 8)	B4A|SINE|B4	23209.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	71.0	161.0	153.5	106.0	181.5	128.0
Merged-chr10-7211090-2	chr10	7210590	7211590	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172546, intron 1 of 12)	intron (NM_172546, intron 1 of 12)	1147.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	1.5	0.0	4.0	0.0	0.0	2.5
Merged-chr15-57694582-4	chr15	57694090	57695090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199449)	promoter-TSS (NM_199449)	-77.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170319360-4	chr2	170318877	170319877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36984.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-36974489-4	chr10	36973994	36974994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008229)	promoter-TSS (NM_008229)	-50.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20090603-4	chr13	20090054	20091054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080288)	promoter-TSS (NM_080288)	47.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	61.5	164.0	145.0	47.0	171.0	96.0
Merged-chr18-23883153-2	chr18	23882653	23883653	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 6 of 7)	MLT1A0|LTR|ERVL-MaLR	-71535.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62329109-3	chr4	62328605	62329605	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355385, intron 13 of 27)	intron (NM_001355385, intron 13 of 27)	31491.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70544280-4	chr8	70543780	70544780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	4605.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	47.5	79.0	77.5	66.5	110.5	74.5
Merged-chr11-30026095-4	chr11	30025574	30026574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146016)	promoter-TSS (NM_146016)	-41.0	NM_146016	237711.0	Mm.445271	NM_146016	ENSMUSG00000044072	Eml6	2900083P10Rik|C230094A16Rik|EMAP-6	echinoderm microtubule associated protein like 6	protein-coding	13.0	22.0	15.0	14.0	24.0	24.5
Merged-chr3-69674374-4	chr3	69673889	69674889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47666.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	43.0	123.0	73.0	28.0	69.5	36.0
Merged-chr6-113650288-4	chr6	113649778	113650778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	11811.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59585213-4	chr13	59584724	59585724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045633)	promoter-TSS (NR_045633)	-1.0	NR_045633	319469.0	Mm.437992	NR_045633	ENSMUSG00000021557	A230056J06Rik	-	RIKEN cDNA A230056J06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-130796691-4	chr3	130796192	130797192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66294.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41402768-4	chr19	41402265	41403265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17695.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120481705-4	chr2	120481204	120482204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109761, intron 2 of 20)	intron (NM_001109761, intron 2 of 20)	4795.0	NM_001109761	12335.0	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	1.0	1.0	0.5	3.0	0.5	5.5
Merged-chr4-34643947-2	chr4	34643447	34644447	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151507, intron 8 of 19)	intron (NR_151507, intron 8 of 19)	28990.0	NM_181406	109093.0	Mm.22363	NM_181406	ENSMUSG00000028292	Rars2	1500002I10Rik|PRO1992|Rarsl	arginyl-tRNA synthetase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-140984458-2	chr4	140983958	140984958	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2415.0	NM_029097	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86487973-4	chr6	86487458	86488458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040292, exon 1 of 2)	non-coding (NR_040292, exon 1 of 2)	269.0	NR_040293	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83395543-4	chr17	83395049	83396049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357886, intron 1 of 21)	MTEa|LTR|ERVL-MaLR	44618.0	NM_001357886	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142340748-4	chr7	142340240	142341240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177265, intron 3 of 3)	intron (NM_177265, intron 3 of 3)	31519.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	107.0	249.5	168.5	25.0	92.0	76.0
Merged-chr13-37290904-4	chr13	37290392	37291392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54453.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	10.5	41.0	24.0	20.0	51.5	26.5
Merged-chr16-17492369-4	chr16	17491859	17492859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291070, intron 1 of 19)	intron (NM_001291070, intron 1 of 19)	438.0	NM_001291070	72168.0	Mm.40038	NM_175178	ENSMUSG00000022763	Aifm3	2810401C16Rik|AI840249|Aifl	apoptosis-inducing factor, mitochondrion-associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-8412978-4	chr6	8412470	8413470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302353, intron 4 of 4)	intron (NM_001302353, intron 4 of 4)	96191.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37048781-3	chr19	37048267	37049267	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198300, intron 9 of 10)	intron (NM_198300, intron 9 of 10)	122688.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	11.5	55.5	39.5	0.0	3.0	4.0
Merged-chr6-136553955-4	chr6	136553462	136554462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	35111.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	75.5	87.5	88.5	50.0	107.0	103.5
Merged-chr3-41564806-5	chr3	41564271	41565271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130186)	promoter-TSS (NM_001130186)	-109.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	15.5	13.5	11.5	5.0	10.5	8.5
Merged-chr13-10107052-4	chr13	10106527	10107527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 3 of 4)	intron (NM_033269, intron 3 of 4)	253776.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43885214-4	chr5	43884727	43885727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	16418.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	27.0	63.0	56.0	40.0	49.0	53.5
Merged-chr7-46999141-4	chr7	46998607	46999607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175318, intron 2 of 5)	intron (NM_175318, intron 2 of 5)	9307.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-123049934-4	chr6	123049475	123050475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190310)	promoter-TSS (NM_001190310)	13.0	NM_001190310	69810.0	Mm.333374	NM_027218	ENSMUSG00000030147	Clec4b1	1810046I24Rik|Aplra2|Clec4b|DCAR|DCARbeta|Dcar2	C-type lectin domain family 4, member b1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-39101974-3	chr16	39101471	39102471	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86979.0	NR_153800	102640746.0		NR_153800		Gm36742	-	predicted gene, 36742	ncRNA	0.0	6.0	2.5	1.5	0.0	4.5
Merged-chr15-59003863-4	chr15	59003371	59004371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	70061.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27674622-4	chr7	27674162	27675162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290528)	promoter-TSS (NM_001290528)	1.0	NM_198417	112415.0	Mm.145362	NM_198417	ENSMUSG00000057093	Zfp607b	C030039L03Rik	zinc finger protein 607B	protein-coding	7.5	18.5	16.5	5.0	19.5	11.0
Merged-chr1-60016369-4	chr1	60015866	60016866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357296, intron 3 of 10)	intron (NM_001357296, intron 3 of 10)	26756.0	NM_001357296	70375.0	Mm.17834	NM_027407	ENSMUSG00000026018	Ica1l	1700030B17Rik|Als2cr15|b2b3465Clo	islet cell autoantigen 1-like	protein-coding	62.0	125.0	66.5	48.0	184.5	80.0
Merged-chr11-26637886-4	chr11	26637406	26638406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43986.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	54.0	80.0	89.0	28.5	46.0	40.5
Merged-chr17-34956642-2	chr17	34956142	34957142	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010478, exon 1 of 1)	3' UTR (NM_010478, exon 1 of 1)	2596.0	NM_010478	15511.0	Mm.372314	NM_010478	ENSMUSG00000090877	Hspa1b	Hsp70|Hsp70-1|Hsp70.1|hsp68	heat shock protein 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84638806-3	chr8	84638321	84639321	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007578, exon 46 of 47)	exon (NM_007578, exon 46 of 47)	24031.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123465813-2	chr9	123465313	123466313	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12888.0	NM_013860	29806.0	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19130683-2	chr7	19130183	19131183	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175530, intron 1 of 1)	intron (NM_175530, intron 1 of 1)	10824.0	NM_175530	243867.0	Mm.230830	NM_175530	ENSMUSG00000050428	Fbxo46	20D7-FC4|4932704E22Rik|Fbxo34l	F-box protein 46	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4099268-4	chr19	4098775	4099775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_075078)	promoter-TSS (NR_075078)	-723.0	NR_075078	18739.0	Mm.1860	NM_008851	ENSMUSG00000024851	Pitpnm1	DRES9|Mpt-1|Nir-2|PITPnm 1|Pitpnm|R75447|Rd9|RdgB|RdgB1	phosphatidylinositol transfer protein, membrane-associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39171885-4	chr10	39171391	39172391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8097.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78735820-2	chr17	78735357	78736357	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011500, intron 1 of 17)	intron (NM_011500, intron 1 of 17)	703.0	NM_011500	268980.0	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	21.0	33.5	29.5	13.0	27.0	22.0
Merged-chr9-107635496-4	chr9	107634991	107635991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008138)	promoter-TSS (NM_008138)	-149.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4237676-4	chr7	4237205	4238205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081239)	promoter-TSS (NM_001081239)	-49.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	74.5	195.0	100.0	57.0	137.0	119.5
Merged-chr17-45573318-4	chr17	45572797	45573797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008302)	promoter-TSS (NM_008302)	-36.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	60.0	133.5	98.5	59.0	116.0	100.0
Merged-chr8-24714029-2	chr8	24713529	24714529	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001324489, intron 7 of 21)	B3|SINE|B2	11823.0	NM_009619	11497.0	Mm.5168	NM_009619	ENSMUSG00000031553	Adam3	Cyrn1|Taz83|tMDC	a disintegrin and metallopeptidase domain 3 (cyritestin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53782445-2	chr11	53781945	53782945	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11972.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23562462-4	chr13	23561943	23562943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178205)	promoter-TSS (NM_178205)	-78.0	NM_178205	319151.0	Mm.261658	NM_178205	ENSMUSG00000069273	Hist1h3e	H3-f|H3.1	histone cluster 1, H3e	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-63694064-4	chr18	63693539	63694539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44E|LTR|ERVK	-1680.0	NM_016792	53382.0	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132944307-4	chr4	132943813	132944813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21762.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	59.5	130.0	100.5	41.0	68.0	86.0
Merged-chr3-96725069-2	chr3	96724569	96725569	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028925, intron 2 of 14)	RMER4A|LTR|ERVK	2370.0	NM_028925	74414.0	Mm.276043	NM_028925	ENSMUSG00000028099	Polr3c	4933407E01Rik|RPC3|RPC62	polymerase (RNA) III (DNA directed) polypeptide C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-86878735-4	chr8	86878233	86879233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	6525.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	8.5	40.0	18.5	5.0	41.0	32.5
Merged-chr5-122640208-2	chr5	122639708	122640708	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3703.0	NM_001038839	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	0.0	1.5	2.0	0.0	2.0	0.5
Merged-chr17-50292922-4	chr17	50292456	50293456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010021, intron 1 of 10)	CpG	664.0	NM_010021	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	6.5	3.5	11.5	0.5	0.5	5.5
Merged-chr12-55421460-4	chr12	55420944	55421944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	22619.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14571659-2	chr8	14571159	14572159	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 4 of 15)	RLTR23|LTR|ERV1	-316877.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.0	1.5	1.0	1.0	0.0	0.0
Merged-chr2-121271492-4	chr2	121270990	121271990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290830)	promoter-TSS (NM_001290830)	-83.0	NM_013735	27223.0	Mm.215389	NM_013735	ENSMUSG00000043909	Trp53bp1	53BP1|Tp53bp1|m53BP1|p53BP1	transformation related protein 53 binding protein 1	protein-coding	8.5	8.0	4.5	2.0	16.5	10.0
Merged-chr5-150140673-4	chr5	150140174	150141174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119256.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25279499-4	chr10	25278986	25279986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 3 of 7)	intron (NM_018747, intron 3 of 7)	19677.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	12.5	8.5	4.5	12.5	8.5	5.5
Merged-chr12-99608484-4	chr12	99607999	99608999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136760, intron 2 of 3)	intron (NR_136760, intron 2 of 3)	19475.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-88459038-4	chr13	88458549	88459549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-362423.0	NM_010103	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50762878-4	chr15	50762388	50763388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	126161.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	23.0	42.5	36.5	3.5	39.5	23.5
Merged-chr8-11013556-2	chr8	11013056	11014056	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_046017, intron 1 of 4)	intron (NR_046017, intron 1 of 4)	-5126.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49858692-4	chr16	49858199	49859199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 1 of 9)	intron (NM_010581, intron 1 of 9)	3045.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129297287-4	chr2	129296766	129297766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040371)	promoter-TSS (NR_040371)	-54.0	NM_181589	70466.0	Mm.45785	NM_181589	ENSMUSG00000048327	Ckap2l	2010016H04Rik|2610318C08Rik|AV070319|radmis|rdm	cytoskeleton associated protein 2-like	protein-coding	78.0	153.0	119.0	35.5	107.5	95.5
Merged-chr6-115544638-4	chr6	115544106	115545106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199033)	promoter-TSS (NM_199033)	-98.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-174018185-4	chr2	174017679	174018679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58872.0	NM_172675	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	0.0	0.5	0.0	2.5	4.0	2.5
Merged-chr18-36522254-4	chr18	36521744	36522744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5908.0	NM_172830	240215.0	Mm.135463	NM_172830	ENSMUSG00000024485	Slc4a9	AE4|D630003B07|D630024F24Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 9	protein-coding	2.0	2.5	2.0	2.0	4.0	3.5
Merged-chr5-92488359-4	chr5	92487859	92488859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	17298.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106623825-4	chr11	106623337	106624337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-10907.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	6.0	25.5	24.5	13.5	22.5	16.5
Merged-chr7-81849409-4	chr7	81848905	81849905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9596.0	NR_111910	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	34.5	93.0	63.0	27.0	58.0	52.0
Merged-chr16-50225155-4	chr16	50224649	50225649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347240, exon 12 of 17)	exon (NM_001347240, exon 12 of 17)	-152297.0	NR_045935	224180.0	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51408970-4	chr3	51408492	51409492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025523)	promoter-TSS (NM_025523)	-37.0	NM_025523	66377.0	Mm.331007	NM_025523	ENSMUSG00000037152	Ndufc1	2310016K22Rik|KFYI	NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66392718-4	chr7	66392236	66393236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_053080, exon 13 of 13)	exon (NM_053080, exon 13 of 13)	-4395.0	NM_146191	233328.0	Mm.33284	NM_146191	ENSMUSG00000015133	Lrrk1	AW319595|C230002E15Rik|D130026O16Rik|mKIAA1790	leucine-rich repeat kinase 1	protein-coding	44.5	89.0	94.5	36.5	117.0	76.0
Merged-chr4-136286034-4	chr4	136285565	136286565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009557)	promoter-TSS (NM_009557)	-2.0	NM_009557	22704.0	Mm.1504	NM_009557	ENSMUSG00000051351	Zfp46	AI426962|Mlz-4|Zfp-46|Znf436	zinc finger protein 46	protein-coding	1.5	40.5	13.5	10.5	21.5	21.0
Merged-chr18-23871675-2	chr18	23871175	23872175	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	67705.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-127278235-4	chr1	127277747	127278747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 2 of 17)	intron (NM_145128, intron 2 of 17)	73261.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121491076-4	chr3	121490565	121491565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145394, intron 10 of 14)	intron (NM_145394, intron 10 of 14)	41279.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-47014774-4	chr7	47014299	47015299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6385.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73944945-4	chr17	73944446	73945446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 1 of 35)	intron (NM_011723, intron 1 of 35)	5250.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59314935-4	chr15	59314420	59315420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009270)	promoter-TSS (NM_009270)	-172.0	NM_009270	20775.0	Mm.296169	NM_009270	ENSMUSG00000022351	Sqle	AI323792	squalene epoxidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-26445152-2	chr4	26444572	26445572	+	1000.0	f0_balb.idr|f1_balb.idr	Intergenic	Lx2B|LINE|L1	-98420.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	6.5	11.0	5.5	3.5	18.0	6.5
Merged-chr19-37375803-2	chr19	37375303	37376303	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010615)	promoter-TSS (NM_010615)	-600.0	NM_010615	16551.0	Mm.42203	NM_010615	ENSMUSG00000012443	Kif11	Eg5|Kif8|Kifl1|Knsl1	kinesin family member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-51022675-4	chr2	51022176	51023176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	112992.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166875094-4	chr2	166874571	166875571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085495, intron 30 of 38)	intron (NM_001085495, intron 30 of 38)	-31025.0	NM_023565	110750.0	Mm.22417	NM_023565	ENSMUSG00000002718	Cse1l	2610100P18Rik|AA407533|Capts|Cas|Xpo2	chromosome segregation 1-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-23273902-4	chr19	23273381	23274381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153808)	promoter-TSS (NM_153808)	16.0	NM_153808	226026.0	Mm.23267	NM_153808	ENSMUSG00000024943	Smc5	MLZ-453|SMC-5|Smc5l1|mKIAA0594|mSMC5	structural maintenance of chromosomes 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97179593-3	chr6	97179105	97180105	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081111)	promoter-TSS (NM_001081111)	-481.0	NM_001081111	232286.0	Mm.30893	NM_001081111	ENSMUSG00000030059	Tmf1	7030402D04Rik|Gm153|Tmf1`	TATA element modulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97361177-4	chr15	97360686	97361686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 3 of 5)	intron (NM_172293, intron 3 of 5)	-113899.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4592620-2	chr2	4592120	4593120	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 5 of 11)	intron (NM_001177844, intron 5 of 11)	32866.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55793604-4	chr14	55793098	55794098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4741.0	NM_001164108	56532.0	Mm.46612	NM_019955	ENSMUSG00000022221	Ripk3	2610528K09Rik|AW107945|Rip3	receptor-interacting serine-threonine kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115995107-4	chr6	115994649	115995649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026376)	promoter-TSS (NM_026376)	-144.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106683545-4	chr8	106683023	106684023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173037, intron 1 of 17)	intron (NM_173037, intron 1 of 17)	455.0	NM_173037	272538.0	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	46.5	121.5	57.0	24.0	67.5	33.0
Merged-chr14-61684376-4	chr14	61683865	61684865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1992.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-3634070-4	chr13	3633591	3634591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001267724)	promoter-TSS (NM_001267724)	59.0	NM_001267724	142688.0	Mm.253061	NM_178283	ENSMUSG00000033781	Asb13	2210015B19Rik|6430573K02Rik|Asb-13|C85285	ankyrin repeat and SOCS box-containing 13	protein-coding	10.5	28.5	13.5	4.5	27.0	6.5
Merged-chr9-57640641-4	chr9	57640160	57641160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 2 of 14)	intron (NM_001304761, intron 2 of 14)	4993.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45685447-4	chr14	45684945	45685945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27302.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	70.0	124.0	86.5	36.5	97.5	53.5
Merged-chr17-6655372-4	chr17	6654842	6655842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166630, intron 1 of 4).2	CpG	489.0	NM_001166630	100040563.0	Mm.457381	NM_001166630	ENSMUSG00000000579	Dynlt1c	100040603|Dynlt1d	dynein light chain Tctex-type 1C	protein-coding	14.0	42.5	21.5	10.0	51.0	42.5
Merged-chr10-96686289-4	chr10	96685799	96686799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69298.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168170409-4	chr2	168169913	168170913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-15900.0	NR_040327	77017.0	Mm.407822	NR_040327	ENSMUSG00000087648	E130018N17Rik	-	RIKEN cDNA E130018N17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17624033-4	chr17	17623544	17624544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	CpG	445.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	28.5	107.0	72.0	21.0	129.0	34.0
Merged-chr1-84407093-4	chr1	84406582	84407582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152915, intron 9 of 12)	intron (NM_152915, intron 9 of 12)	-122437.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128357253-4	chr8	128356761	128357761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1812.0	NM_001358959	18186.0	Mm.271745	NM_008737	ENSMUSG00000025810	Nrp1	C530029I03|NP-1|NPN-1|Npn1|Nrp	neuropilin 1	protein-coding	16.5	20.0	11.5	5.0	6.0	14.5
Merged-chr4-88033413-4	chr4	88032924	88033924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027326)	promoter-TSS (NM_027326)	-17.0	NM_027326	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-48494536-4	chr9	48494020	48495020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004191)	promoter-TSS (NM_001004191)	810.0	NM_001326355	67010.0	Mm.76911	NM_144948	ENSMUSG00000042396	Rbm7	1200007M24Rik|1500011D06Rik|AU041934|AW554393	RNA binding motif protein 7	protein-coding	300.0	639.5	511.5	270.0	725.0	570.5
Merged-chr17-34024738-4	chr17	34024237	34025237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009066)	promoter-TSS (NM_009066)	-57.0	NM_009066	19763.0	Mm.20343	NM_009066	ENSMUSG00000024325	Ring1	Ring1A	ring finger protein 1	protein-coding	118.5	313.0	234.5	157.5	310.5	304.5
Merged-chr8-115420612-2	chr8	115420123	115421123	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	286271.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76615023-4	chr12	76614513	76615513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013675, intron 15 of 35)	ORR1D2|LTR|ERVL-MaLR	-67088.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97164839-4	chr15	97164346	97165346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155278, intron 2 of 3)	intron (NR_155278, intron 2 of 3)	2398.0	NR_155278	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96881520-2	chr11	96881020	96882020	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	31127.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	25.0	26.5	26.0	4.0	7.0	8.0
Merged-chr14-63131886-4	chr14	63131392	63132392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	9430.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90509540-4	chr3	90509033	90510033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293781)	promoter-TSS (NM_001293781)	-35.0	NM_001293778	66511.0	Mm.154136	NM_023215	ENSMUSG00000001017	Chtop	2500003M10Rik|Fop|Srag	chromatin target of PRMT1	protein-coding	11.0	44.5	18.5	20.5	57.5	18.5
Merged-chr17-64661518-4	chr17	64661026	64662026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 6 of 21)	RLTR9E|LTR|ERVK	59877.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29948390-4	chr19	29947886	29948886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164724, intron 1 of 7)	intron (NM_001164724, intron 1 of 7)	2596.0	NM_001164724	77125.0	Mm.182359	NM_133775	ENSMUSG00000024810	Il33	9230117N10Rik|Il-33|Il1f11|NF-HEV	interleukin 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-69212647-2	chr10	69212165	69213165	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001081347)	promoter-TSS (NM_001081347)	8.0	NM_001081347	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-56418209-4	chr9	56417700	56418700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025812)	promoter-TSS (NM_025812)	-150.0	NM_172924	244895.0	Mm.490331	NM_172924	ENSMUSG00000074305	Peak1	1110049L02Rik|9530046P14|AA690169|BE132841|C230081A13Rik|SGK269|mKIAA2002	pseudopodium-enriched atypical kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35752275-4	chr18	35751766	35752766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11712.0	NM_001289592	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-122117325-4	chr9	122116850	122117850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164572)	promoter-TSS (NM_001164572)	84.0	NM_001357774	20623.0	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136131253-4	chr1	136130734	136131734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046167)	promoter-TSS (NR_046167)	-51.0	NR_046167	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60752838-4	chr10	60752327	60753327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023596)	promoter-TSS (NM_023596)	-45.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145880670-1	chr2	145880170	145881170	+	1000.0	f1_c57bl6.idr	intron (NM_028724, intron 11 of 12)	intron (NM_028724, intron 11 of 12)	-22571.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	24.5	40.0	20.0	5.5	25.5	25.5
Merged-chr8-120537893-7	chr8	120537397	120538397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106159)	promoter-TSS (NR_106159)	-171.0	NR_151732	74227.0	Mm.334856	NR_151732	ENSMUSG00000102737	1700016A09Rik	-	RIKEN cDNA 1700016A09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19094498-4	chr10	19094005	19095005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47244.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	8.5	24.5	29.5	12.5	15.0	16.0
Merged-chr18-82954311-4	chr18	82953833	82954833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177464, intron 1 of 5)	intron (NM_001177464, intron 1 of 5)	-33773.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30359190-4	chr2	30358667	30359667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001289710, exon 1 of 10)	exon (NM_001289710, exon 1 of 10)	149.0	NM_139302	227700.0	Mm.33343	NM_139302	ENSMUSG00000026860	Sh3glb2	SPAS-1	SH3-domain GRB2-like endophilin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-45881013-4	chr1	45880502	45881502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	44592.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-6285548-4	chr7	6285044	6286044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1036.0	NM_001024928	384763.0	Mm.276279	NM_001024928	ENSMUSG00000054893	Zfp667	A830025F02Rik|Mip1|ZNF667	zinc finger protein 667	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95659550-4	chr3	95659047	95660047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008562, intron 1 of 2)	intron (NM_008562, intron 1 of 2)	826.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145214618-4	chr4	145214126	145215126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011610, exon 10 of 10)	3' UTR (NM_011610, exon 10 of 10)	-19621.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94704143-4	chr8	94703622	94704622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7880.0	NM_026385	67801.0	Mm.279977	NM_026385	ENSMUSG00000031775	Pllp	0610010I06Rik|AV001002|Plapi|Tm4sf11	plasma membrane proteolipid	protein-coding	0.0	3.5	3.0	2.0	7.0	5.0
Merged-chr6-48579494-4	chr6	48578937	48579937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR42-int|LTR|ERVK	-6635.0	NM_001347167	71660.0	Mm.28231	NM_027852	ENSMUSG00000009281	Rarres2	0610007L05Rik|AI303516	retinoic acid receptor responder (tazarotene induced) 2	protein-coding	10.5	14.0	22.5	12.5	13.5	4.0
Merged-chr3-144202298-7	chr3	144201807	144202807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161770)	promoter-TSS (NM_001161770)	25.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-109023478-4	chr9	109022989	109023989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 9 of 13)	MLT1-int|LTR|ERVL-MaLR	-15078.0	NM_001284332	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84589735-4	chr18	84589224	84590224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033341)	promoter-TSS (NM_001033341)	-220.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79871334-4	chr11	79870842	79871842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91045.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11130165-2	chr4	11129665	11130665	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3932.0	NR_030455	735261.0		NR_030455	ENSMUSG00000105333	Mir684-2	Mirn684-2	microRNA 684-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-42053913-2	chr13	42053413	42054413	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 1 of 8)	intron (NM_007772, intron 1 of 8)	1892.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70990117-4	chr17	70989612	70990612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023402, intron 1 of 3)	intron (NM_023402, intron 1 of 3)	404.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	9.5	16.5	20.0	8.5	22.0	28.5
Merged-chr8-120572775-4	chr8	120572289	120573289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198671, exon 11 of 16)	exon (NM_198671, exon 11 of 16)	16286.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-21369185-4	chr12	21368677	21369677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291871, intron 1 of 18)	(CAGA)n|Simple_repeat|Simple_repeat	4455.0	NR_102380	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	293.0	667.0	514.5	144.5	351.0	206.0
Merged-chr19-3905566-7	chr19	3905072	3906072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016921)	promoter-TSS (NM_016921)	-342.0	NM_016921	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23307645-4	chr16	23307139	23308139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252506, intron 1 of 6)	intron (NM_001252506, intron 1 of 6)	17169.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102020071-2	chr7	102019571	102020571	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001360748, exon 9 of 9)	3' UTR (NM_001360748, exon 9 of 9)	-1916.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117764805-4	chr10	117764315	117765315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134010, intron 19 of 27)	intron (NM_134010, intron 19 of 27)	-18457.0	NM_029875	215436.0	Mm.256753	NM_029875	ENSMUSG00000060181	Slc35e3	9330166G04Rik|AI481200	solute carrier family 35, member E3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99929399-4	chr10	99928912	99929912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-86409.0	NM_001347156	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120686269-4	chr8	120685760	120686760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17940.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126799816-2	chr7	126799298	126800298	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_007438)	promoter-TSS (NM_007438)	-544.0	NM_007438	11674.0	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	60.5	139.5	90.0	53.0	141.0	105.0
Merged-chr3-108850773-4	chr3	108850276	108851276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10274.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4652121-4	chr2	4651608	4652608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356451)	promoter-TSS (NM_001356451)	27.0	NM_026045	67229.0	Mm.38529	NM_026045	ENSMUSG00000039449	Prpf18	2810441A10Rik	pre-mRNA processing factor 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29779191-2	chr11	29778691	29779691	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 26 of 41)	B1F2|SINE|Alu	46477.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr1-72107287-4	chr1	72106787	72107787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102092.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132474800-4	chr4	132474296	132475296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10875.0	NM_026039	67219.0	Mm.45929	NM_026039	ENSMUSG00000066042	Med18	2810046C01Rik	mediator complex subunit 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-4548032-2	chr3	4547532	4548532	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	-250676.0	NR_045272	100503859.0	Mm.75172	NR_045272	ENSMUSG00000098659	1110015O18Rik	-	RIKEN cDNA 1110015O18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92467209-4	chr5	92466680	92467680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 2 of 11)	intron (NM_007644, intron 2 of 11)	8623.0	NR_105843	102466159.0		NR_105843	ENSMUSG00000099160	Mir6415	Gm27714|mmu-mir-6415	microRNA 6415	ncRNA	19.5	67.0	34.5	19.0	67.0	39.0
Merged-chr4-53156617-2	chr4	53156115	53157115	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	3280.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	45.0	113.0	90.5	42.5	74.5	89.0
Merged-chr2-38479736-4	chr2	38479249	38480249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-31948.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-149193761-4	chr6	149193258	149194258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30B_MM|LTR|ERV1	-5046.0	NM_001113424	232566.0	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29383578-4	chr19	29383076	29384076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 5 of 6)	intron (NM_021893, intron 5 of 6)	16138.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136123599-4	chr4	136123080	136124080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20242.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	47.0	76.0	47.5	71.0	97.5	55.5
Merged-chr4-53125626-2	chr4	53125126	53126126	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	34269.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43785198-4	chr13	43784708	43785708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289915)	promoter-TSS (NM_001289915)	96.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123353675-2	chr4	123353175	123354175	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 91 of 92)	intron (NM_001199137, intron 91 of 92)	-10423.0	NM_007558	12163.0	Mm.439749	NM_007558	ENSMUSG00000032726	Bmp8a	Bmp7r1|OP-2|OP2	bone morphogenetic protein 8a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-48558887-4	chr9	48558400	48559400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46223.0	NM_010924	18113.0	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	49.5	90.5	108.0	57.0	117.5	103.5
Merged-chr11-121706622-4	chr11	121706127	121707127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144797, intron 1 of 3)	intron (NM_144797, intron 1 of 3)	4200.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-38054475-3	chr19	38053995	38054995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	promoter-TSS (NM_001360663)	promoter-TSS (NM_001360663)	-489.0	NM_028293	74107.0	Mm.9916	NM_028293	ENSMUSG00000024989	Cep55	1200008O12Rik|2700032M20Rik	centrosomal protein 55	protein-coding	10.0	36.0	18.0	10.5	13.5	19.0
Merged-chr15-99045086-4	chr15	99044605	99045605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	-10069.0	NM_001163588	19132.0	Mm.2477	NM_013639	ENSMUSG00000023484	Prph	Prph1	peripherin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166327164-4	chr2	166326678	166327678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	53270.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44138353-4	chr16	44137853	44138853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	906.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-92092250-4	chr6	92091771	92092771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347342)	promoter-TSS (NM_001347342)	-162.0	NM_001347342	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-3782707-4	chr13	3782196	3783196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21622.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	14.0	8.0	6.0	20.0	6.5	11.5
Merged-chr16-55949181-2	chr16	55948681	55949681	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14333.0	NM_001159365	74201.0	Mm.178427	NM_028815	ENSMUSG00000022604	Cep97	2810403B08Rik|4932439K18Rik|AA437768|E130116N02Rik|Lrriq2	centrosomal protein 97	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-22748186-4	chr2	22747668	22748668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26159.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71873129-4	chr2	71872562	71873562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172665)	promoter-TSS (NM_172665)	-162.0	NM_172665	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	24.0	77.0	77.5	18.0	92.5	71.5
Merged-chr9-119402025-4	chr9	119401517	119402517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313757)	promoter-TSS (NM_001313757)	-161.0	NM_007397	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	29.0	42.0	22.5	5.5	43.0	39.0
Merged-chr13-58067927-4	chr13	58067417	58068417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195075, intron 6 of 16)	MIRc|SINE|MIR	34511.0	NM_001195075	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-37970163-4	chr2	37969706	37970706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146122, intron 11 of 21)	intron (NM_146122, intron 11 of 21)	193957.0	NM_001163566	241324.0	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105780595-4	chr1	105780088	105781088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009399)	promoter-TSS (NM_009399)	-135.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120205757-4	chr7	120205241	120206241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026458, intron 1 of 30)	L1MB5|LINE|L1	1777.0	NM_026458	67928.0	Mm.158178	NM_026458	ENSMUSG00000062017	Abca14	1700110B15Rik|4930539G24Rik	ATP-binding cassette, sub-family A (ABC1), member 14	protein-coding	67.0	91.0	87.5	102.5	118.0	161.5
Merged-chr6-31116550-4	chr6	31116052	31117052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	MIRb|SINE|MIR	-53459.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-15758677-4	chr6	15758165	15759165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	38004.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80603046-7	chr10	80602532	80603532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019575, intron 1 of 6)	CpG	150.0	NM_019575	56214.0	Mm.273170	NM_019575	ENSMUSG00000113949	Scamp4	2410022D05Rik|AI448940|AU022392|AW742369|Sc4	secretory carrier membrane protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67242184-4	chr7	67241684	67242684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291195, intron 8 of 10)	intron (NM_001291195, intron 8 of 10)	19568.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4915694-4	chr12	4915200	4916200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1653.0	NM_001099628	320817.0	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-13607801-5	chr6	13607228	13608228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028990, intron 1 of 4)	CpG	370.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	183.5	464.0	343.0	166.0	498.5	379.0
Merged-chr15-80075571-2	chr15	80075064	80076064	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3015.0	NR_028282	100302601.0		NR_028282	ENSMUSG00000077734	Snord83b	MBII-10	small nucleolar RNA, C/D box 83B	snoRNA	78.0	132.0	105.5	41.5	215.0	107.5
Merged-chr11-50430977-4	chr11	50430478	50431478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172557, exon 1 of 18)	exon (NM_172557, exon 1 of 18)	133.0	NM_172557	216724.0	Mm.390400	NM_172557	ENSMUSG00000020375	Rufy1	3000002E04Rik|Rabip4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110485714-4	chr12	110485202	110486202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012023)	promoter-TSS (NM_012023)	-37.0	NM_001081457	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12794229-2	chr19	12793729	12794729	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053009, intron 1 of 10)	intron (NM_053009, intron 1 of 10)	1894.0	NR_024093	664779.0	Mm.290924	NM_001039718	ENSMUSG00000024695	Gm44505	Zfp91-Cntf|Zfp91Cntf	predicted readthrough transcript (NMD candidate), 44505	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33178587-4	chr16	33178084	33179084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6487.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83573252-4	chr8	83572714	83573714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134118, intron 5 of 12)	intron (NM_134118, intron 5 of 12)	6456.0	NM_025843	66916.0	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	8.5	8.0	8.5	21.0	13.5	12.0
Merged-chr4-46451962-4	chr4	46451449	46452449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130889, intron 1 of 6)	CpG	1023.0	NM_130889	67628.0	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-38741588-4	chr9	38741094	38742094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145957, intron 18 of 18)	intron (NM_001145957, intron 18 of 18)	-11202.0	NM_146787	258783.0	Mm.131149	NM_146787	ENSMUSG00000061039	Olfr920	MOR165-6	olfactory receptor 920	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-142747395-4	chr6	142746897	142747897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9289.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76494666-4	chr11	76494167	76495167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346670)	promoter-TSS (NM_001346670)	-172.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-40922510-4	chr13	40922009	40923009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133219, intron 1 of 2)	intron (NM_133219, intron 1 of 2)	4875.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-144891423-4	chr4	144890922	144891922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	-1405.0	NM_001172424	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-45628640-4	chr16	45628149	45629149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145389, intron 5 of 5)	MTE2a|LTR|ERVL-MaLR	18209.0	NM_001159297	14525.0	Mm.4799	NM_008099	ENSMUSG00000022659	Gcsam	Gcet|Gcet2|M17|M17-L	germinal center associated, signaling and motility	protein-coding	9.5	5.5	10.5	8.5	7.5	17.5
Merged-chr12-25213951-4	chr12	25213377	25214377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84703.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	171.5	343.5	244.0	139.5	261.0	192.0
Merged-chr3-96905260-4	chr3	96904710	96905710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026229)	promoter-TSS (NM_026229)	88.0	NM_026229	67549.0	Mm.46722	NM_026229	ENSMUSG00000028096	Gpr89	4933412D19Rik|Gpr89a|SH120	G protein-coupled receptor 89	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102887659-4	chr2	102887164	102888164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	14001.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	14.0	24.5	14.5	12.0	17.5	18.5
Merged-chr18-20809841-4	chr18	20809327	20810327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR40|LTR|ERVK	-63423.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-33814528-4	chr1	33814085	33815085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359275)	promoter-TSS (NM_001359275)	10.0	NM_133817	98403.0	Mm.289103	NM_133817	ENSMUSG00000042197	Zfp451	4930515K21Rik|4933435G09Rik|AI596398|COASTER|Kiaa0576-hp|Znf451|mKIAA1702	zinc finger protein 451	protein-coding	0.0	0.0	7.5	3.5	0.0	0.0
Merged-chr5-105595725-4	chr5	105595230	105596230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	76259.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40626694-4	chr12	40626191	40627191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 4 of 52)	intron (NM_172803, intron 4 of 52)	180638.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51185624-4	chr3	51185133	51186133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38814.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	300.5	542.0	418.5	52.0	151.5	100.5
Merged-chr8-126566160-4	chr8	126565666	126566666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27270.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.5	7.5	9.5	0.0	7.5	6.5
Merged-chr16-11203358-4	chr16	11202839	11203839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038156)	promoter-TSS (NR_038156)	-44.0	NR_038156	69918.0	Mm.440400	NR_038154		2610020C07Rik	-	RIKEN cDNA 2610020C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69372025-4	chr12	69371496	69372496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007481)	promoter-TSS (NM_007481)	-154.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	169.0	362.0	299.0	163.0	432.5	281.5
Merged-chr17-88132936-7	chr17	88132424	88133424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7412.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-129878571-4	chr3	129878059	129879059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023196)	promoter-TSS (NM_023196)	-47.0	NR_104611	66350.0	Mm.151951	NM_023196	ENSMUSG00000027999	Pla2g12a	2310004B05Rik|GXII|GXII-1|GXII-1-PLA2|Pla2g12|Rossy|mGXII-1	phospholipase A2, group XIIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-80617165-4	chr2	80616635	80617635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024438)	promoter-TSS (NM_024438)	-79.0	NM_024438	68082.0	Mm.306818	NM_024438	ENSMUSG00000027001	Dusp19	5930436K22Rik|C79103|SKRP1|TS-DSP1	dual specificity phosphatase 19	protein-coding	0.0	0.0	0.0	2.0	0.0	0.0
Merged-chr9-78521099-4	chr9	78520640	78521640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39416.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-138526384-4	chr3	138525857	138526857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035481)	promoter-TSS (NR_035481)	-64.0	NR_035481	100316706.0		NR_035481	ENSMUSG00000088373	Mir1956	mir-1956|mmu-mir-1956	microRNA 1956	ncRNA	58.0	188.0	139.5	71.5	179.5	128.5
Merged-chr5-64885233-4	chr5	64884749	64885749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47450.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-85325678-4	chr9	85325192	85326192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160379, intron 2 of 2)	intron (NM_001160379, intron 2 of 2)	1432.0	NM_001160378	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	15.0	36.0	18.5	14.5	32.5	22.5
Merged-chr16-76372429-6	chr16	76371925	76372925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	CpG	624.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165651374-4	chr1	165650873	165651873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 5 of 5)	intron (NM_001038846, intron 5 of 5)	-16832.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56744387-4	chr19	56743898	56744898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22026.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32695975-4	chr9	32695456	32696456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011808)	promoter-TSS (NM_011808)	-86.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	4.0	10.5	18.0	27.5	21.5	23.5
Merged-chr5-122646752-2	chr5	122646252	122647252	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038845, intron 1 of 12)	L2|LINE|L2	2841.0	NM_001038887	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	1.0	2.0	1.0	0.0	0.0	3.5
Merged-chr7-96951526-4	chr7	96951042	96952042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153591)	promoter-TSS (NM_153591)	15.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	19.0	32.0	20.0	9.0	23.5	19.0
Merged-chr15-25441748-2	chr15	25441248	25442248	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027376, intron 1 of 1)	intron (NR_027376, intron 1 of 1)	27556.0	NR_027376	432939.0	Mm.146555	NM_001013791		Gm5468	100040583|EG432939	predicted gene 5468	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5930388-4	chr19	5929891	5930891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5575.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-75797961-4	chr13	75797463	75798463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41922.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	17.5	56.5	39.0	13.0	79.5	42.0
Merged-chr15-50779842-4	chr15	50779335	50780335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	109214.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0.0	0.0	3.0	0.0	0.0	5.5
Merged-chr5-102055174-4	chr5	102054653	102055653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	MLTR11B|LTR|ERVK	14768.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100534393-4	chr7	100533907	100534907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2693.0	NM_183270	68185.0	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	48.5	175.0	71.5	39.0	153.0	76.0
Merged-chr11-97362266-4	chr11	97361788	97362788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138657)	promoter-TSS (NM_138657)	-263.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	20.0	29.5	18.5	10.5	44.5	24.5
Merged-chr12-52594557-2	chr12	52594057	52595057	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7765.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	6.0	19.0	3.0	4.0	2.5	6.0
Merged-chr1-191122954-4	chr1	191122509	191123509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24595.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	35.0	87.0	45.0	48.0	97.0	69.5
Merged-chr11-69920925-2	chr11	69920425	69921425	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166594)	promoter-TSS (NM_001166594)	22.0	NM_001166594	276770.0	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101552730-4	chr11	101552237	101553237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252223)	promoter-TSS (NM_001252223)	83.0	NM_001252223	17966.0	Mm.784	NM_008676	ENSMUSG00000017119	Nbr1	mKIAA0049	neighbor of Brca1 gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29442246-4	chr17	29441769	29442769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48776.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80839077-2	chr10	80838577	80839577	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013758, intron 1 of 1)	B1_Mus2|SINE|Alu	4721.0	NM_001359746	237403.0	Mm.40213	NM_001013758	ENSMUSG00000051067	Lingo3	AI851712|LERN2	leucine rich repeat and Ig domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137796397-2	chr4	137795897	137796897	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007431)	promoter-TSS (NM_007431)	-13.0	NM_007431	11647.0	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	1.5	0.5	0.0	0.0	0.0	1.0
Merged-chr7-19357346-4	chr7	19356843	19357843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007948)	TTS (NM_007948)	2140.0	NM_145822	70333.0	Mm.171370	NM_145822	ENSMUSG00000047649	Cd3eap	1190028F09|2610103M17Rik|ASE-1|Ase1|CAST|PAF49	CD3E antigen, epsilon polypeptide associated protein	protein-coding	0.0	0.0	6.5	2.0	6.0	3.0
Merged-chr8-85515613-4	chr8	85515090	85516090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173866, intron 6 of 11)	intron (NM_173866, intron 6 of 11)	22973.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	21.0	62.5	72.0	23.0	48.5	46.0
Merged-chr10-86949293-4	chr10	86948818	86949818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 17 of 68)	intron (NM_138673, intron 17 of 68)	58624.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156036099-4	chr1	156035622	156036622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160182)	promoter-TSS (NM_001160182)	86.0	NM_001160182	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	304.5	726.5	549.5	358.5	589.0	513.0
Merged-chr4-32588419-4	chr4	32587939	32588939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	13943.0	NM_010289	14610.0	Mm.377084	NM_010289	ENSMUSG00000051056	Gja10	Cx-57|Cx59|cx57	gap junction protein, alpha 10	protein-coding	7.5	16.5	4.5	1.0	6.5	3.0
Merged-chr2-154569229-4	chr2	154568725	154569725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001291105, exon 1 of 7)	5' UTR (NM_001291105, exon 1 of 7)	201.0	NM_001291105	13555.0	Mm.18036	NM_007891	ENSMUSG00000027490	E2f1	E2F-1|Tg(Wnt1-cre)2Sor|mKIAA4009	E2F transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-42880593-4	chr4	42880088	42881088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6354.0	NM_177785	277773.0	Mm.212727	NM_177785	ENSMUSG00000050141	Fam205c	4931430D02|FAM205CP	family with sequence similarity 205, member C	protein-coding	1.5	0.0	0.0	1.5	0.0	0.0
Merged-chr3-130730379-4	chr3	130729878	130730878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026724)	promoter-TSS (NM_026724)	20.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-26643429-4	chr14	26642922	26643922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007479, intron 1 of 5)	intron (NM_007479, intron 1 of 5)	5288.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-31871438-4	chr11	31870927	31871927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001290676, exon 1 of 9)	5' UTR (NM_001290676, exon 1 of 9)	487.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	51.0	124.0	101.5	75.5	131.0	149.0
Merged-chr4-120966710-2	chr4	120966210	120967210	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6612.0	NR_105982	102465614.0		NR_105982	ENSMUSG00000106436	Mir7015	mmu-mir-7015	microRNA 7015	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-74027461-2	chr13	74026961	74027961	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_182839, intron 2 of 3)	intron (NM_182839, intron 2 of 3)	18042.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96278188-4	chr3	96277695	96278695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	8495.0	NM_175666	319189.0	Mm.297655	NM_175666	ENSMUSG00000105827	Hist2h2bb	H2b-616	histone cluster 2, H2bb	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66599793-4	chr9	66599310	66600310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6695.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120633653-4	chr11	120633162	120634162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010756)	promoter-TSS (NM_010756)	-115.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	54.0	79.0	76.5	50.5	82.0	81.0
Merged-chr13-33077304-6	chr13	33076836	33077836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-6767.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	56.0	122.0	134.5	43.5	71.5	67.5
Merged-chr13-98997234-4	chr13	98996725	98997725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12660.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31084137-4	chr3	31083632	31084632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamRep605|LTR?|LTR?	-10926.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-90721239-2	chr6	90720739	90721739	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356440, intron 1 of 13)	intron (NM_001356440, intron 1 of 13)	-4710.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105988299-4	chr1	105987785	105988785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151625, intron 2 of 2)	intron (NR_151625, intron 2 of 2)	1997.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	135.0	180.0	135.0	46.5	129.5	112.5
Merged-chr18-9504335-5	chr18	9503820	9504820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54166.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	5.5	11.0	12.5	16.5	10.0	17.0
Merged-chr8-33662953-1	chr8	33662453	33663453	+	1000.0	f1_c57bl6.idr	intron (NM_010344, intron 1 of 12)	intron (NM_010344, intron 1 of 12)	9715.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	0.0	18.0	11.5	3.0	3.5	1.5
Merged-chr13-62383177-4	chr13	62382667	62383667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162910)	promoter-TSS (NM_001162910)	7.0	NM_001162910	100041979.0	Mm.445930	NM_001162910	ENSMUSG00000094942	Gm3604	-	predicted gene 3604	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40455606-7	chr9	40455112	40456112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172768, exon 1 of 20)	exon (NM_172768, exon 1 of 20)	152.0	NM_172768	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	25.5	18.5	32.5	19.0	6.5	12.0
Merged-chr9-78050572-4	chr9	78050087	78051087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1371.0	NM_008103	14531.0	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11912912-4	chr19	11912412	11913412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172635, intron 1 of 18)	CpG	513.0	NM_172635	225929.0	Mm.42711	NM_172635	ENSMUSG00000046139	Patl1	AV312086|Pat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding	134.0	318.5	288.0	188.5	332.0	308.5
Merged-chr11-110436307-3	chr11	110435814	110436814	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	MER20|DNA|hAT-Charlie	37212.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30593348-4	chr14	30592826	30593826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	16984.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	56.5	89.0	79.0	52.5	90.5	91.5
Merged-chr3-104511964-4	chr3	104511460	104512460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310698)	promoter-TSS (NM_001310698)	-42.0	NM_001310698	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	25.5	78.0	62.5	50.5	94.0	91.5
Merged-chr4-134095136-4	chr4	134094655	134095655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013706)	promoter-TSS (NM_013706)	-82.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	26.5	78.0	84.0	4.5	67.5	17.5
Merged-chr16-10496203-4	chr16	10495731	10496731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302619, intron 2 of 19)	intron (NM_001302619, intron 2 of 19)	6450.0	NM_001243761	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88567369-4	chr1	88566855	88567855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	15838.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44853880-2	chr7	44853380	44854380	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290694, intron 3 of 4)	intron (NM_001290694, intron 3 of 4)	-3266.0	NM_021549	59047.0	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80150473-3	chr10	80149980	80150980	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347117, intron 2 of 7)	CpG-1261	798.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69088709-6	chr11	69088270	69089270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009497, intron 1 of 4)	CpG	242.0	NM_009497	22318.0	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|Vamp-2|sybII	vesicle-associated membrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106889370-2	chr9	106888888	106889888	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029103, intron 3 of 3)	intron (NM_029103, intron 3 of 3)	-2388.0	NM_175402	109095.0	Mm.431589	NM_175402	ENSMUSG00000074102	Rbm15b	1810017N16Rik	RNA binding motif protein 15B	protein-coding	10.5	15.5	1.5	1.0	15.0	8.5
Merged-chr7-140115772-4	chr7	140115254	140116254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053119, intron 1 of 7)	intron (NM_053119, intron 1 of 7)	669.0	NM_053119	93747.0	Mm.24452	NM_053119	ENSMUSG00000025465	Echs1	C80529	enoyl Coenzyme A hydratase, short chain, 1, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99772528-4	chr15	99772080	99773080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028015)	promoter-TSS (NM_028015)	-65.0	NM_028015	71949.0	Mm.390821	NM_028015	ENSMUSG00000023021	Cers5	2310081H14Rik|AU045339|AW544927|Lass5|Trh4	ceramide synthase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112355673-4	chr5	112355180	112356180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001039228, exon 1 of 1)	exon (NM_001039228, exon 1 of 1)	353.0	NM_001039228	625424.0	Mm.389677	NM_001039228	ENSMUSG00000051503	Gm6583	EG625424	predicted gene 6583	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72272942-3	chr8	72272453	72273453	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32935.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	15.0	19.5	16.5	10.5	23.5	19.5
Merged-chr2-45246791-4	chr2	45246276	45247276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-129334.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89960635-4	chr3	89960137	89961137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081182, intron 2 of 27)	CpG	2695.0	NM_001081182	54667.0	Mm.30455	NM_001081182	ENSMUSG00000060671	Atp8b2	Id	ATPase, class I, type 8B, member 2	protein-coding	0.0	0.5	0.0	0.0	2.5	0.0
Merged-chr2-148530679-4	chr2	148530193	148531193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87158.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	5.0	20.0	17.5	2.0	6.5	20.5
Merged-chr7-135736543-4	chr7	135736032	135737032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20153.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98629562-2	chr15	98629062	98630062	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2766.0	NM_001044741	12297.0	Mm.3544	NM_007581	ENSMUSG00000003352	Cacnb3	Beta3|CAB3|Ca(v)beta3|Cchb3	calcium channel, voltage-dependent, beta 3 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-142756664-4	chr6	142756139	142757139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009908)	promoter-TSS (NM_009908)	-47.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79618119-4	chr12	79617611	79618611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	306622.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35754489-4	chr7	35753974	35754974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178704)	promoter-TSS (NM_178704)	-20.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	0.0	4.0	2.0	0.5	5.0	10.5
Merged-chr1-84218742-4	chr1	84218258	84219258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_105771)	TTS (NR_105771)	203.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82016620-4	chr11	82016114	82017114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18963.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128369023-4	chr10	128368511	128369511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081040, exon 1 of 5)	5' UTR (NM_001081040, exon 1 of 5)	1026.0	NM_001081040	210582.0	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102526975-2	chr14	102526475	102527475	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	455657.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7341792-4	chr19	7341301	7342301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007928)	promoter-TSS (NM_007928)	59.0	NM_001080389	13728.0	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90050026-1	chr7	90049526	90050526	+	1000.0	f1_c57bl6.idr	TTS (NR_110364)	TTS (NR_110364)	20867.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	2.5	10.5	13.5	7.5	7.5	6.0
Merged-chr6-72439567-4	chr6	72439034	72440034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145569)	promoter-TSS (NM_145569)	24.0	NM_145569	232087.0	Mm.29815	NM_145569	ENSMUSG00000053907	Mat2a	D630045P18Rik	methionine adenosyltransferase II, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16222082-4	chr7	16221579	16222579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285931)	promoter-TSS (NM_001285931)	-47.0	NM_027883	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	70.5	156.5	116.5	46.0	105.5	105.5
Merged-chr7-27553164-4	chr7	27552647	27553647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011116)	promoter-TSS (NM_011116)	71.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	6.0	25.0	17.0	24.0	8.0	6.0
Merged-chr9-35570229-4	chr9	35569728	35570728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029762)	promoter-TSS (NM_029762)	-159.0	NM_029762	76832.0	Mm.482285	NM_029762	ENSMUSG00000050555	Hyls1	3010015K02Rik	HYLS1, centriolar and ciliogenesis associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142935794-4	chr5	142935281	142936281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33B|LTR|ERVL	-24574.0	NM_007984	14086.0	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74430673-4	chr17	74430170	74431170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 8 of 8)	MLT1J|LTR|ERVL-MaLR	28438.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60113880-4	chr2	60113372	60114372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 1 of 35)	L1MA5A|LINE|L1	11868.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148496176-4	chr5	148495662	148496662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55511.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	70.5	85.5	83.0	55.0	94.0	69.0
Merged-chr10-14055574-4	chr10	14055088	14056088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	89209.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	45.0	70.5	69.5	33.0	93.5	91.5
Merged-chr7-102011409-2	chr7	102010909	102011909	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133947, intron 19 of 24)	intron (NM_133947, intron 19 of 24)	6746.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	2.5	15.5	12.0	2.5	19.0	18.5
Merged-chr14-62838096-1	chr14	62837596	62838596	+	1000.0	f0_balb.idr	TTS (NR_106174)	TTS (NR_106174)	375.0	NR_106174	102465889.0		NR_106174	ENSMUSG00000099245	Mir8098	Gm27462|mmu-mir-8098	microRNA 8098	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-52398087-4	chr12	52397584	52398584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82525.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129259706-2	chr2	129259206	129260206	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	37506.0	NM_181589	70466.0	Mm.45785	NM_181589	ENSMUSG00000048327	Ckap2l	2010016H04Rik|2610318C08Rik|AV070319|radmis|rdm	cytoskeleton associated protein 2-like	protein-coding	0.5	8.5	1.0	0.5	3.5	0.0
Merged-chr8-25201665-4	chr8	25201175	25202175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177089)	promoter-TSS (NM_177089)	-133.0	NM_177089	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-94691947-4	chr9	94691444	94692444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 2 of 15)	intron (NM_177909, intron 2 of 15)	22052.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	124.0	185.5	158.0	91.0	197.0	148.5
Merged-chr13-112112654-2	chr13	112112154	112113154	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-175797.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57799667-4	chr10	57799170	57800170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020561, intron 1 of 7)	ORR1D2|LTR|ERVL-MaLR	5126.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-174076271-4	chr2	174075805	174076805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172675)	promoter-TSS (NM_172675)	-746.0	NM_172675	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121546147-4	chr3	121545663	121546663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13819.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41249785-4	chr13	41249324	41250324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001135577)	promoter-TSS (NM_001135577)	-20.0	NM_001135577	108934.0	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167691106-2	chr2	167690606	167691606	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015500)	promoter-TSS (NR_015500)	-71.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54757236-4	chr14	54756732	54757732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	24654.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	191.0	374.0	348.5	83.5	263.5	227.5
Merged-chr5-88770531-4	chr5	88770106	88771106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007832, intron 2 of 6)	MTC|LTR|ERVL-MaLR	5593.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22641932-4	chr8	22641439	22642439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011130, intron 7 of 13)	intron (NM_011130, intron 7 of 13)	-5130.0	NR_027886	68074.0	Mm.463136	NR_027886		A930013F10Rik	-	RIKEN cDNA A930013F10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-43492985-4	chr18	43492485	43493485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-54699.0	NM_001291455	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40318321-4	chr9	40317818	40318818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	3005.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65972743-2	chr5	65972243	65973243	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081104, intron 4 of 4)	intron (NM_001081104, intron 4 of 4)	5619.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131473981-4	chr1	131473482	131474482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	53379.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136673526-4	chr1	136673042	136674042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9854.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87399335-2	chr6	87398835	87399835	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10400.0	NM_026860	68888.0	Mm.46387	NM_026860	ENSMUSG00000030048	Gkn3	1190003M12Rik	gastrokine 3	protein-coding	0.0	0.0	0.0	0.0	3.5	0.0
Merged-chr17-34561417-4	chr17	34560922	34561922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2873.0	NM_010929	18132.0	Mm.173813	NM_010929	ENSMUSG00000015468	Notch4	Int-3|Int3|N4	notch 4	protein-coding	24.5	56.0	36.0	4.0	28.5	10.0
Merged-chr7-80025203-4	chr7	80024719	80025719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145999, intron 1 of 4)	CpG	405.0	NM_001146000	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71452963-4	chr6	71452462	71453462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-12325.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4186720-4	chr11	4186216	4187216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134023)	promoter-TSS (NM_134023)	-117.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-30873427-1	chr1	30872927	30873927	+	1000.0	f0_c57.idr	Intergenic	CpG	-10171.0	NM_001081080	213109.0	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik	PHD finger protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54595185-4	chr6	54594667	54595667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164361)	promoter-TSS (NM_001164361)	56.0	NM_001164361	231999.0	Mm.35416	NM_001001335	ENSMUSG00000005225	Plekha8	6330400G01|AA517676|BC052360|Fapp-2|Fapp2	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-31109497-3	chr7	31109015	31110015	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008281, intron 2 of 12)	intron (NM_008281, intron 2 of 12)	1482.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	0.5	8.5	5.5	0.5	8.0	6.0
Merged-chr18-67389376-4	chr18	67388887	67389887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1344.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	61.5	80.5	67.0	58.0	101.5	55.5
Merged-chr1-132370939-4	chr1	132370457	132371457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178874, intron 2 of 4)	intron (NM_178874, intron 2 of 4)	-3009.0	NM_001311108	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57651019-4	chr9	57650478	57651478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 2 of 14)	intron (NM_001304761, intron 2 of 14)	2653.0	NM_001304761	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-64518763-4	chr18	64518249	64519249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2192.0	NM_001142950	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120489494-4	chr8	120488961	120489961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	CpG-14576	595.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75833912-1	chr14	75833412	75834412	+	1000.0	f0_c57.idr	Intergenic	RSINE1|SINE|B4	11052.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-8675683-6	chr5	8675150	8676150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011076, intron 6 of 29)	Tigger7|DNA|TcMar-Tigger	-52698.0	NM_198620	242819.0	Mm.332192	NM_198620	ENSMUSG00000040570	Rundc3b	Gm440	RUN domain containing 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-38820343-4	chr9	38819885	38820885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4977.0	NM_146781	258777.0	Mm.223208	NM_146781	ENSMUSG00000043911	Olfr922	MOR161-3	olfactory receptor 922	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11558237-4	chr8	11557724	11558724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302459)	promoter-TSS (NM_001302459)	-186.0	NM_001302459	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83536596-4	chr11	83536092	83537092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6074.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-68694519-1	chr7	68694019	68695019	+	1000.0	f1_balb.idr	Intergenic	Intergenic	54719.0	NM_001042592	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	0.5	0.0	3.0	0.0	0.0	0.0
Merged-chr10-26797502-4	chr10	26796993	26797993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	24981.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	23.0	39.0	37.0	42.5	55.5	37.5
Merged-chr19-40732163-2	chr19	40731663	40732663	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 7 of 9)	L1_Mus4|LINE|L1	72393.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.0	4.0	0.0	5.0	0.0	3.5
Merged-chr1-137898526-4	chr1	137898036	137899036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67919.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32309606-4	chr19	32309105	32310105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 2 of 9)	MTD|LTR|ERVL-MaLR	39711.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158154197-4	chr2	158153690	158154690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7798.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99375164-2	chr5	99374664	99375664	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-122237.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108477174-4	chr6	108476667	108477667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 46 of 61)	intron (NM_010585, intron 46 of 61)	-12576.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	13.0	22.5	33.5	41.0	51.5	39.5
Merged-chr18-5803130-4	chr18	5802628	5803628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	210481.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	101.0	144.0	124.0	63.5	157.0	95.5
Merged-chr13-113446331-4	chr13	113445859	113446859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045501)	TTS (NR_045501)	56485.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-3498388-4	chr6	3497910	3498910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024260)	promoter-TSS (NM_024260)	17.0	NM_001167750	73288.0	Mm.45539	NM_024260	ENSMUSG00000001376	Vps50	1700034M03Rik|8430415E05Rik|BLM|C87205|Ccdc132|mKIAA1861	VPS50 EARP/GARPII complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50674756-4	chr17	50674263	50675263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 5 of 5)	LTR48B|LTR|ERV1	-23918.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	28.5	41.5	36.0	43.0	45.5	32.0
Merged-chr11-85526381-2	chr11	85525881	85526881	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 16 of 25)	UCON26|Unknown|Unknown	173217.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-81536357-4	chr17	81535869	81536869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	202018.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-151543043-3	chr2	151542561	151543561	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126058, intron 2 of 3)	CpG-8654	578.0	NM_001302078	14225.0	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132695813-4	chr2	132695178	132696178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028637, intron 2 of 2)	intron (NM_028637, intron 2 of 2)	5080.0	NM_028637	73747.0	Mm.284114	NM_028637	ENSMUSG00000044991	1110034G24Rik	-	RIKEN cDNA 1110034G24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43547347-4	chr4	43546857	43547857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011602, intron 19 of 56)	intron (NM_011602, intron 19 of 56)	15226.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	0.0	10.0	1.5	7.0	2.0	1.5
Merged-chr15-84996449-2	chr15	84995949	84996949	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8478.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-78913901-4	chr7	78913374	78914374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113527)	promoter-TSS (NM_001113527)	109.0	NM_020583	57444.0	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67800056-4	chr18	67799568	67800568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045376)	promoter-TSS (NR_045376)	-39.0	NM_027556	70799.0	Mm.30857	NM_027556	ENSMUSG00000024542	Cep192	4631422C13Rik|D430014P18Rik	centrosomal protein 192	protein-coding	2.0	11.0	5.0	2.0	3.5	12.0
Merged-chr5-115003455-3	chr5	115002985	115003985	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8039.0	NM_029012	74585.0	Mm.355894	NM_029012	ENSMUSG00000029550	Sppl3	4833416I09Rik|Psl4|Usmg3	signal peptide peptidase 3	protein-coding	0.0	0.0	0.5	1.5	1.5	0.0
Merged-chr12-112643137-2	chr12	112642637	112643637	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	-1691.0	NM_001161737	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20674272-4	chr14	20673792	20674792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168273)	promoter-TSS (NM_001168273)	-29.0	NM_172596	218811.0	Mm.173119	NM_172596	ENSMUSG00000039367	Sec24c	2610204K03Rik|mKIAA0079	Sec24 related gene family, member C (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47737034-4	chr17	47736532	47737532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161723)	promoter-TSS (NM_001161723)	-5.0	NM_001161722	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117944088-4	chr10	117943583	117944583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045342, intron 3 of 3)	MTC|LTR|ERVL-MaLR	18624.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34744879-4	chr8	34744382	34745382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62728.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	4.0	34.5	18.0	4.0	13.0	2.0
Merged-chr5-112276521-4	chr5	112276039	112277039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001326590)	promoter-TSS (NM_001326590)	-152.0	NM_001326590	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	76.0	185.0	143.0	74.0	160.0	159.5
Merged-chr19-44293974-4	chr19	44293477	44294477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009128, exon 1 of 6)	5' UTR (NM_009128, exon 1 of 6)	301.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	7.5	8.5	4.0	0.5	16.5	11.5
Merged-chr10-8790696-2	chr10	8790162	8791162	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 4 of 19)	intron (NM_175155, intron 4 of 19)	95408.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	2.0	0.0	0.5	0.0	7.5	0.0
Merged-chr3-14886491-8	chr3	14885979	14886979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009801, exon 1 of 7)	5' UTR (NM_009801, exon 1 of 7)	191.0	NM_009801	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-47015899-4	chr7	47015409	47016409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	-7495.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78589071-4	chr15	78588578	78589578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7489.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	56.0	132.0	71.5	34.0	100.5	87.5
Merged-chr2-5845108-6	chr2	5844654	5845654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356501)	promoter-TSS (NM_001356501)	23.0	NM_001356502	98828.0	Mm.181490	NM_133837	ENSMUSG00000039128	Cdc123	AA959893|G431001I09Rik	cell division cycle 123	protein-coding	0.0	1.0	5.0	0.0	1.0	0.0
Merged-chr14-31383585-2	chr14	31383085	31384085	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 3 of 7)	intron (NM_001347585, intron 3 of 7)	34092.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44139160-4	chr16	44138664	44139664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028108)	promoter-TSS (NM_028108)	95.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-104021927-4	chr5	104021437	104022437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053262)	promoter-TSS (NM_053262)	-141.0	NM_053262	114664.0	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142386296-2	chr7	142385800	142386800	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009983, intron 1 of 8)	intron (NM_009983, intron 1 of 8)	1570.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	2.0	9.5	8.5	0.5	6.0	5.5
Merged-chr17-65635907-4	chr17	65635387	65636387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3869.0	NM_153519	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-75436124-4	chr9	75435630	75436630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5394.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	12.0	38.5	16.0	22.5	13.0	22.5
Merged-chr6-88842215-4	chr6	88841720	88842720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030251)	promoter-TSS (NM_030251)	-285.0	NR_155424	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48043718-4	chr17	48043237	48044237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-5444.0	NM_029689	76651.0	Mm.76918	NM_029689	ENSMUSG00000094928	1700122O11Rik	-	RIKEN cDNA 1700122O11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110464198-4	chr9	110463683	110464683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360306, intron 1 of 9)	intron (NM_001360306, intron 1 of 9)	12511.0	NM_001360306	270201.0	Mm.41744	NM_177771	ENSMUSG00000054792	Klhl18	A930041K15|AW545966	kelch-like 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142909603-2	chr5	142909114	142910114	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-2860.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-100416207-4	chr6	100415710	100416710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111190.0	NR_040525	73395.0	Mm.69413	NR_040525	ENSMUSG00000101553	1700049E22Rik	-	RIKEN cDNA 1700049E22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132282215-4	chr2	132281700	132282700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291040, intron 1 of 3)	intron (NM_001291040, intron 1 of 3)	-3739.0	NM_001291039	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-53851544-4	chr1	53851069	53852069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 21 of 28)	intron (NM_001001883, intron 21 of 28)	2145.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	68.0	134.5	103.0	75.0	154.5	109.5
Merged-chr4-138325760-4	chr4	138325296	138326296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026880, intron 1 of 7)	CpG	500.0	NM_026880	68943.0	Mm.18539	NM_026880	ENSMUSG00000028756	Pink1	1190006F07Rik|AU042772|AW557854|BRPK|mFLJ00387	PTEN induced putative kinase 1	protein-coding	24.5	33.5	43.5	20.0	58.0	40.5
Merged-chr15-100732799-4	chr15	100732295	100733295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045781)	promoter-TSS (NR_045781)	-58.0	NR_045782	619313.0	Mm.123436	NR_045781	ENSMUSG00000116504	I730030J21Rik	-	RIKEN cDNA I730030J21 gene	ncRNA	30.5	95.0	56.5	71.0	104.0	80.0
Merged-chr9-35051082-2	chr9	35050582	35051582	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 9 of 10)	intron (NM_009178, intron 9 of 10)	-65646.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	71.0	77.5	70.0	43.0	93.5	78.5
Merged-chr11-58009335-2	chr11	58008835	58009835	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028451, exon 1 of 19)	exon (NM_028451, exon 1 of 19)	271.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47220420-1	chr19	47219920	47220920	+	1000.0	f0_c57.idr	intron (NM_021360, intron 1 of 5)	(CACAT)n|Simple_repeat|Simple_repeat	-8423.0	NM_001163480	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	6.5	16.5	13.0	10.5	2.0	5.5
Merged-chr14-62808835-4	chr14	62808337	62809337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045503, intron 2 of 6)	LTR16A|LTR|ERVL	-28853.0	NM_175546	268752.0	Mm.1960	NM_175546	ENSMUSG00000014547	Wdfy2	5830485M08|B130024L21Rik|ProF|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding	28.5	30.5	17.0	8.5	15.5	20.0
Merged-chr9-32146429-4	chr9	32145945	32146945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195632, intron 2 of 21)	intron (NM_001195632, intron 2 of 21)	30309.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-49832602-4	chr18	49832116	49833116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081371)	promoter-TSS (NM_001081371)	-381.0	NM_001081371	240283.0	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-57958406-4	chr4	57957890	57958890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1979.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34570207-4	chr19	34569709	34570709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355262, intron 1 of 2)	intron (NM_001355262, intron 1 of 2)	-13320.0	NM_010501	15959.0	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49818766-4	chr16	49818275	49819275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-36879.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37208312-4	chr19	37207838	37208838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290828)	promoter-TSS (NM_001290828)	793.0	NM_001164336	69104.0	Mm.175989	NM_027314	ENSMUSG00000023307	March5	1810015H18Rik|2310008I22Rik|2700055A20Rik|5730499H23Rik|E130202O05Rik|MARCH-V|MITOL|Marchv|Rnf153	membrane-associated ring finger (C3HC4) 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-53888869-4	chr10	53888301	53889301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137892.0	NM_001081428	75906.0	Mm.436785	NM_001081428	ENSMUSG00000019856	Fam184a	3110012E06Rik|4930438C08Rik|4930589M24Rik	family with sequence similarity 184, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-95694132-4	chr12	95693613	95694613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	1887.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52924518-4	chr2	52924010	52925010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	66642.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25273496-4	chr17	25273005	25274005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027452)	promoter-TSS (NR_027452)	-74.0	NM_001177610	22196.0	Mm.240044	NM_011665	ENSMUSG00000015120	Ube2i	5830467E05Rik|UBC9|Ubce2i|Ubce9	ubiquitin-conjugating enzyme E2I	protein-coding	274.5	571.0	389.5	235.5	469.0	392.0
Merged-chr9-32652438-4	chr9	32651947	32652947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-43595.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-17019377-2	chr11	17018877	17019877	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10659.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134932291-4	chr5	134931799	134932799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024479)	promoter-TSS (NM_024479)	-74.0	NM_001359536	79565.0	Mm.34235	NM_024479	ENSMUSG00000040557	Mettl27	AW492986|BC002286|Wbscr27	methyltransferase like 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130078294-4	chr5	130077795	130078795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013837, intron 1 of 5)	intron (NM_013837, intron 1 of 5)	-1075.0	NM_001130476	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31009064-1	chr14	31008564	31009564	+	1000.0	f1_balb.idr	intron (NM_001165930, intron 4 of 9)	Charlie10b|DNA|hAT-Charlie	5287.0	NR_028531	100217431.0		NR_028531		Snord69	MBII-210	small nucleolar RNA, C/D box 69	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59562697-4	chr13	59562169	59563169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5322.0	NM_023328	67269.0	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128817962-4	chr2	128817497	128818497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028248)	promoter-TSS (NM_028248)	-306.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	41.5	118.5	73.5	36.5	97.0	71.5
Merged-chr2-45063320-2	chr2	45062820	45063820	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-40143.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102249572-4	chr7	102249085	102250085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	533.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78538765-4	chr9	78538216	78539216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172773, intron 10 of 10)	intron (NM_172773, intron 10 of 10)	49329.0	NM_172773	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109199609-4	chr4	109199119	109200119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346502, intron 1 of 23)	intron (NM_001346502, intron 1 of 23)	2653.0	NM_133885	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19310239-5	chr7	19309680	19310680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008036)	promoter-TSS (NM_008036)	-135.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44988798-4	chr16	44988281	44989281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	45103.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-5824196-4	chr10	5823729	5824729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175374)	promoter-TSS (NM_175374)	-286.0	NM_175374	108853.0	Mm.55082	NM_175374	ENSMUSG00000019774	Mtrf1l	9130004K12Rik	mitochondrial translational release factor 1-like	protein-coding	9.0	27.0	24.0	21.0	38.5	32.5
Merged-chr15-102065858-4	chr15	102065363	102066363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7910.0	NM_145625	75705.0	Mm.290022	NM_145625	ENSMUSG00000058655	Eif4b	2310046H11Rik|AL024095|C85189|Eif4a2	eukaryotic translation initiation factor 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151595082-4	chr1	151594577	151595577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	23704.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182380834-4	chr1	182380327	182381327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28340.0	NM_173378	209456.0	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23894446-4	chr18	23893929	23894929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001162942)	TTS (NM_001162942)	-60259.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117866914-4	chr10	117866461	117867461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20987.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106210947-4	chr8	106210447	106211447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001007567)	promoter-TSS (NM_001007567)	-14.0	NR_152744	66432.0	Mm.269029	NM_001007567	ENSMUSG00000033106	Slc7a6os	2010007L18Rik|2400002F02Rik	solute carrier family 7, member 6 opposite strand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-26845447-4	chr19	26844926	26845926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21519.0	NR_045306	70942.0	Mm.411548	NR_045306	ENSMUSG00000093772	4931403E22Rik	-	RIKEN cDNA 4931403E22 gene	ncRNA	0.0	0.5	1.5	0.0	0.0	0.0
Merged-chr4-42965534-4	chr4	42965016	42966016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4430.0	NM_026088	67317.0	Mm.478018	NM_026088	ENSMUSG00000028451	1700022I11Rik	-	RIKEN cDNA 1700022I11 gene	protein-coding	23.0	59.0	17.5	33.5	34.5	18.0
Merged-chr6-29523610-4	chr6	29523100	29524100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3025.0	NM_001311083	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96197210-4	chr3	96196726	96197726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026975, exon 2 of 2)	exon (NM_026975, exon 2 of 2)	360.0	NM_026975	69168.0	Mm.104531	NM_026975	ENSMUSG00000015943	Bola1	1810037G04Rik	bolA-like 1 (E. coli)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131384645-4	chr1	131384149	131385149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 4 of 22)	intron (NM_001081011, intron 4 of 22)	-105086.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	32.0	51.5	31.5	31.5	56.0	31.5
Merged-chr1-151500972-4	chr1	151500479	151501479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011277)	promoter-TSS (NM_011277)	12.0	NM_001360845	19821.0	Mm.474038	NM_011277	ENSMUSG00000026484	Rnf2	AI326319|AI450156|AU019207|Ring1B|dinG	ring finger protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23903071-4	chr18	23902570	23903570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51618.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-56064537-4	chr16	56064034	56065034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360073, intron 1 of 24)	(CAAAA)n|Simple_repeat|Simple_repeat	7004.0	NM_001360073	66315.0	Mm.255784	NM_025483	ENSMUSG00000052917	Senp7	2410152H17Rik|2810413I22Rik|2900036C23Rik|6030449K19Rik|AI790676	SUMO1/sentrin specific peptidase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99493466-4	chr9	99492977	99493977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028768, intron 18 of 21)	L1MD|LINE|L1	23056.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128396155-4	chr2	128395642	128396642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	33209.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105742637-4	chr1	105742154	105743154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173187, intron 24 of 28)	intron (NM_173187, intron 24 of 28)	-38069.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	17.0	28.0	7.0	16.0	15.0	8.0
Merged-chr2-5404379-2	chr2	5403879	5404879	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030601, intron 1 of 1)	intron (NR_030601, intron 1 of 1)	24989.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76804086-2	chr12	76803586	76804586	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347406, intron 2 of 6)	intron (NM_001347406, intron 2 of 6)	-8532.0	NM_030677	14776.0	Mm.441856	NM_030677	ENSMUSG00000042808	Gpx2	GI-GPx|GPx-GI|GSHPx-2|GSHPx-GI	glutathione peroxidase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115536342-4	chr11	115535852	115536852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133354)	promoter-TSS (NM_133354)	-122.0	NM_133354	170930.0	Mm.29923	NM_133354	ENSMUSG00000020738	Sumo2	SUMO-2|Smt3A|Smt3b|Smt3h2	small ubiquitin-like modifier 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-28317013-4	chr5	28316518	28317518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028234)	promoter-TSS (NM_028234)	-171.0	NM_028234	381626.0	Mm.304075	NM_028234	ENSMUSG00000048271	Rbm33	3200001K10Rik|6430512A10Rik|AA386890|Prr8	RNA binding motif protein 33	protein-coding	15.0	38.5	26.0	9.5	47.5	42.5
Merged-chr7-84551669-4	chr7	84551160	84552160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045098, intron 1 of 2)	intron (NR_045098, intron 1 of 2)	22706.0	NR_045098	100039239.0	Mm.44882	NR_045098		Gm2115	C77713	predicted gene 2115	ncRNA	0.0	5.0	0.0	2.0	0.0	1.5
Merged-chr4-107935429-4	chr4	107934922	107935922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-11833.0	NM_009949	12896.0	Mm.307620	NM_009949	ENSMUSG00000028607	Cpt2	AI323697|CPTII	carnitine palmitoyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-45752991-4	chr11	45752507	45753507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55076.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53142622-4	chr19	53142127	53143127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277100)	promoter-TSS (NM_001277100)	-129.0	NM_001277100	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-118466563-4	chr5	118466054	118467054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER58A|DNA|hAT-Charlie	-94165.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-108350984-4	chr11	108350444	108351444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7056.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	11.0	3.0	5.0	7.5	6.0	8.5
Merged-chr14-26638896-4	chr14	26638401	26639401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007479, intron 1 of 5)	intron (NM_007479, intron 1 of 5)	767.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106932164-4	chr1	106931653	106932653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2296.0	NM_027971	71869.0	Mm.321740	NM_027971	ENSMUSG00000059956	Serpinb12	2300003F07Rik|4833409F13Rik	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111164689-4	chr10	111164188	111165188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175489)	promoter-TSS (NM_175489)	-114.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116161148-4	chr9	116160630	116161630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009371, intron 1 of 7)	intron (NM_009371, intron 1 of 7)	14233.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	61.0	114.5	76.0	29.5	62.0	36.0
Merged-chr4-107367933-7	chr4	107367415	107368415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028355, exon 1 of 18)	5' UTR (NM_028355, exon 1 of 18)	131.0	NM_028355	72787.0	Mm.28478	NM_028355	ENSMUSG00000028614	Ndc1	2810475A17Rik|AI450313|Tmem48|sks	NDC1 transmembrane nucleoporin	protein-coding	1.0	0.5	2.0	1.0	0.5	2.0
Merged-chr16-55934805-4	chr16	55934273	55935273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028815)	promoter-TSS (NM_028815)	75.0	NM_001159364	74201.0	Mm.178427	NM_028815	ENSMUSG00000022604	Cep97	2810403B08Rik|4932439K18Rik|AA437768|E130116N02Rik|Lrriq2	centrosomal protein 97	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105825696-4	chr8	105825204	105826204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145824, intron 2 of 13)	intron (NM_145824, intron 2 of 13)	1646.0	NM_145824	74334.0	Mm.4206	NM_145824	ENSMUSG00000037415	Ranbp10	4432417N03Rik	RAN binding protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22990525-4	chr11	22990024	22991024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009837)	promoter-TSS (NM_009837)	-69.0	NM_009837	12464.0	Mm.296985	NM_009837	ENSMUSG00000007739	Cct4	2610204B21Rik|A45|C78323|Cctd	chaperonin containing Tcp1, subunit 4 (delta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6365121-2	chr19	6364621	6365621	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360393, intron 1 of 11)	intron (NM_001360393, intron 1 of 11)	1431.0	NR_122118	22668.0	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27232974-4	chr7	27232478	27233478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133770)	promoter-TSS (NM_133770)	-35.0	NM_133770	76889.0	Mm.124728	NM_133770	ENSMUSG00000003762	Coq8b	0610012P18Rik|Adck4	coenzyme Q8B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-21423199-4	chr17	21422706	21423706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011760)	promoter-TSS (NM_011760)	-21.0	NM_011760	22712.0	Mm.12916	NM_011760	ENSMUSG00000023882	Zfp54	2810034D10Rik|KRAB10|Zfp-54|Zfp76|mszf83	zinc finger protein 54	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92700226-4	chr16	92699726	92700726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-2897.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52822906-4	chr13	52822397	52823397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65692.0	NR_027893	105404.0	Mm.184173	NR_027893		BB123696	-	expressed sequence BB123696	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99480564-4	chr12	99480095	99481095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-30521.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53409401-4	chr15	53408909	53409909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63226.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166719509-4	chr2	166719003	166720003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	-5671.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54075665-4	chr6	54075176	54076176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	MLT1D|LTR|ERVL-MaLR	35744.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	36.5	67.5	44.0	26.5	57.0	43.0
Merged-chr4-34614904-4	chr4	34614409	34615409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015824)	promoter-TSS (NM_015824)	33.0	NM_001159563	50793.0	Mm.399624	NM_015824	ENSMUSG00000040044	Orc3	Orc3l	origin recognition complex, subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4064071-7	chr7	4063593	4064593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113474)	promoter-TSS (NM_001113474)	-889.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	19.5	19.0	24.5	9.0	19.5	16.0
Merged-chr13-99334221-4	chr13	99333738	99334738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026873, intron 4 of 9)	RMER16_Mm|LTR|ERVK	10440.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	37.0	39.5	44.0	19.5	55.0	29.5
Merged-chr1-106375203-4	chr1	106374707	106375707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 12 of 16)	Lx7|LINE|L1	171424.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53564418-4	chr19	53563921	53564921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35103.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19816464-4	chr7	19815985	19816985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033601, intron 2 of 8)	intron (NM_033601, intron 2 of 8)	6270.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152806234-4	chr2	152805723	152806723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	22266.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65021100-2	chr9	65020600	65021600	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021345, intron 1 of 10)	CpG	617.0	NM_021345	57874.0	Mm.308180	NM_021345	ENSMUSG00000033629	Hacd3	4930523M17Rik|AW742319|B-ind1|Hcad3|Hspc121|Ptplad1	3-hydroxyacyl-CoA dehydratase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149653321-2	chr4	149652821	149653821	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164052, exon 18 of 22)	exon (NM_001164052, exon 18 of 22)	2246.0	NR_105990	102465983.0		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132244205-2	chr7	132243705	132244705	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029935, intron 6 of 7)	intron (NM_029935, intron 6 of 7)	-71459.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81274449-2	chr10	81273949	81274949	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001282096, exon 18 of 21)	exon (NM_001282096, exon 18 of 21)	2852.0	NR_037218	100526465.0		NR_037218	ENSMUSG00000092781	Mir3057	mir-3057|mmu-mir-3057	microRNA 3057	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25843169-4	chr15	25842662	25843662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034851)	promoter-TSS (NM_001034851)	-136.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117122930-2	chr11	117122430	117123430	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 2 of 16)	intron (NM_001166507, intron 2 of 16)	7758.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66895525-4	chr9	66895024	66896024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	24181.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-149247283-4	chr5	149246790	149247790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17714.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6742301-4	chr17	6741806	6742806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 9 of 12)	intron (NM_009510, intron 9 of 12)	36476.0	NM_183368	83672.0	Mm.442201	NM_031395	ENSMUSG00000041831	Sytl3	A430092N21|Slp3|Slp3-a|Slp3-b|mFLJ00307	synaptotagmin-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71133268-4	chr17	71132770	71133770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50262.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148686449-4	chr2	148685949	148686949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355689, intron 2 of 5)	intron (NM_001355689, intron 2 of 5)	5329.0	NM_028986	74533.0	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94211310-4	chr11	94210816	94211816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009427)	promoter-TSS (NM_009427)	-138.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111430051-4	chr12	111429526	111430526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289487, intron 13 of 13)	intron (NM_001289487, intron 13 of 13)	12581.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34129690-4	chr10	34129244	34130244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-1772.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-47808457-1	chr10	47807957	47808957	+	1000.0	f1_balb.idr	Intergenic	RMER1C|Other|Other	1563708.0	NR_028276	108637.0		NR_028276	ENSMUSG00000096263	Snord14c	Gm23107|Rnu14|U14	small nucleolar RNA, C/D box 14C	snoRNA	0.0	3.5	0.0	0.5	7.0	0.0
Merged-chr19-6996155-4	chr19	6995660	6996660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027351)	promoter-TSS (NR_027351)	29.0	NR_027351	107328.0	Mm.391161	NM_153597	ENSMUSG00000047656	Trpt1	AU079016|AW045591|Tpt1|Tpt1h	tRNA phosphotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167102260-4	chr2	167101746	167102746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008420, exon 2 of 2)	3' UTR (NM_008420, exon 2 of 2)	36953.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111805093-1	chr13	111804593	111805593	+	1000.0	f0_c57.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	3900.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	1.5	7.5	2.5	1.5	6.0	0.0
Merged-chr13-113618507-4	chr13	113618014	113619014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130796)	promoter-TSS (NM_130796)	50.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77493246-4	chr11	77492740	77493740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004144)	promoter-TSS (NM_001004144)	-172.0	NM_001004144	216963.0	Mm.290182	NM_001004144	ENSMUSG00000011877	Git1	Cat-1|p95Cat	G protein-coupled receptor kinase-interactor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123524255-4	chr5	123523753	123524753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023232)	promoter-TSS (NM_023232)	-89.0	NM_023232	66593.0	Mm.46716	NM_023232	ENSMUSG00000029433	Diablo	0610041G12Rik|1700006L01Rik|AU040403|Smac	diablo, IAP-binding mitochondrial protein	protein-coding	7.0	46.0	26.5	17.0	16.5	29.5
Merged-chr17-35808139-4	chr17	35807650	35808650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13563.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	2.0	21.5	11.5	6.5	22.0	11.5
Merged-chr5-110094512-4	chr5	110093996	110094996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5473.0	NM_207279	403178.0	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142819596-2	chr5	142819096	142820096	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2209.0	NM_001122730	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99725504-4	chr15	99724992	99725992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183256)	promoter-TSS (NM_183256)	-126.0	NM_183256	66379.0	Mm.5265	NM_183256	ENSMUSG00000023020	Cox14	2310016M24Rik|AA959804	cytochrome c oxidase assembly protein 14	protein-coding	22.5	55.0	53.0	17.0	92.0	39.0
Merged-chr7-142399493-4	chr7	142398997	142399997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11627.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97336833-4	chr7	97336345	97337345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039039, intron 1 of 1)	MTE2a|LTR|ERVL-MaLR	4522.0	NM_001039039	622320.0	Mm.334029	NM_001039039	ENSMUSG00000044952	Kctd21	EG622320	potassium channel tetramerisation domain containing 21	protein-coding	6.5	6.0	7.0	11.0	39.5	44.0
Merged-chr10-125387794-4	chr10	125387313	125388313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58850.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	3.0	2.0	1.5	3.5	4.5	15.0
Merged-chr3-88607597-4	chr3	88607104	88608104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8603.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-36613948-4	chr8	36613414	36614414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015802)	promoter-TSS (NM_015802)	29.0	NM_015802	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	30.0	32.0	30.0	3.0	28.5	18.5
Merged-chr6-88068955-4	chr6	88068451	88069451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-15522.0	NM_133933	103963.0	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129549940-4	chr2	129549452	129550452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13350.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	30.0	31.0	10.5	11.5	31.0	20.0
Merged-chr4-119126076-4	chr4	119125574	119126574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011400, intron 2 of 9)	intron (NM_011400, intron 2 of 9)	17329.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	12.0	21.5	42.0	13.0	34.5	14.0
Merged-chr6-42353391-4	chr6	42352895	42353895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289618, intron 4 of 9)	intron (NM_001289618, intron 4 of 9)	3567.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71676639-4	chr8	71676132	71677132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190830, intron 1 of 23)	CpG	249.0	NM_010589	16453.0	Mm.249645	NM_010589	ENSMUSG00000031805	Jak3	fae|wil	Janus kinase 3	protein-coding	27.5	58.5	67.5	27.5	56.0	47.0
Merged-chr17-78265377-4	chr17	78264891	78265891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 2 of 16)	intron (NM_015800, intron 2 of 16)	65143.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101468859-2	chr11	101468359	101469359	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009708, intron 1 of 4)	intron (NM_009708, intron 1 of 4)	684.0	NM_009708	11858.0	Mm.378883	NM_009708	ENSMUSG00000001313	Rnd2	Arhn|Rohn|rho7	Rho family GTPase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25354928-4	chr15	25354438	25355438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58826.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95557451-4	chr4	95556952	95557952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113412)	promoter-TSS (NM_001113412)	-55.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	25.0	17.5	15.5	12.0	15.0	18.5
Merged-chr15-100038662-4	chr15	100038176	100039176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159361)	promoter-TSS (NM_001159361)	12.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37230824-3	chr9	37230330	37231330	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_020258, exon 18 of 18)	3' UTR (NM_020258, exon 18 of 18)	22514.0	NM_001310096	66279.0	Mm.41451	NM_025464	ENSMUSG00000032121	Tmem218	1810021J13Rik|AV004931	transmembrane protein 218	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5065777-4	chr11	5065264	5066264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190406)	promoter-TSS (NM_001190406)	-437.0	NM_001190406	78926.0	Mm.44591	NM_030228	ENSMUSG00000034201	Gas2l1	4930500E24Rik|D0Jmb1|Gar22|TU-71.1	growth arrest-specific 2 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-150099987-4	chr1	150099483	150100483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015466)	promoter-TSS (NR_015466)	-48.0	NM_011198	19225.0	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-140955976-4	chr7	140955452	140956452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030694)	promoter-TSS (NM_030694)	9.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75168694-4	chr14	75168220	75169220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	MLTR11B|LTR|ERVK	32295.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126396873-4	chr7	126396364	126397364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010900)	promoter-TSS (NM_010900)	-127.0	NM_010900	18020.0	Mm.1389	NM_010900	ENSMUSG00000030722	Nfatc2ip	D7Ertd304e|NIP45	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95434957-4	chr8	95434445	95435445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008187)	promoter-TSS (NM_008187)	-76.0	NM_008187	14894.0	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66015189-4	chr5	66014697	66015697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10912.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76403806-1	chr12	76403306	76404306	+	1000.0	f0_c57.idr	promoter-TSS (NM_008301)	promoter-TSS (NM_008301)	-370.0	NM_001002012	15512.0	Mm.296181	NM_008301	ENSMUSG00000059970	Hspa2	70kDa|HSP70.2|HSP70A2|Hsp70-2	heat shock protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56614609-2	chr17	56614109	56615109	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_018730)	TTS (NM_018730)	1214.0	NM_018730	54217.0	Mm.11376	NM_018730	ENSMUSG00000057863	Rpl36	-	ribosomal protein L36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4302513-2	chr18	4302013	4303013	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50440.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20333183-3	chr11	20332703	20333703	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018861)	promoter-TSS (NM_018861)	-490.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	15.5	37.0	15.5	5.0	28.0	18.5
Merged-chr15-85811358-1	chr15	85810858	85811858	+	1000.0	f1_balb.idr	intron (NM_197998, intron 1 of 4)	CpG	339.0	NM_001164626	72355.0	Mm.33706	NM_197998	ENSMUSG00000064284	Cdpf1	2210021J22Rik	cysteine rich, DPF motif domain containing 1	protein-coding	57.0	89.5	51.5	32.0	73.5	50.0
Merged-chr3-31081472-2	chr3	31080972	31081972	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13586.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126594660-4	chr8	126594156	126595156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-14677	-1220.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	14.0	21.0	19.0	14.5	19.0	20.5
Merged-chr8-126589838-2	chr8	126589338	126590338	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164598, exon 2 of 2)	3' UTR (NM_001164598, exon 2 of 2)	3598.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	112.0	224.5	191.0	112.5	215.0	187.0
Merged-chr11-120232799-4	chr11	120232292	120233292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347621)	promoter-TSS (NM_001347621)	-155.0	NM_001347621	268515.0	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120825784-4	chr4	120825281	120826281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277095)	promoter-TSS (NM_001277095)	-40.0	NM_008692	18046.0	Mm.318389	NM_008692	ENSMUSG00000032897	Nfyc	-	nuclear transcription factor-Y gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49904530-4	chr16	49904033	49905033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 8 of 9)	Lx8|LINE|L1	48879.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53139053-4	chr15	53138557	53139557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	207126.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38430150-2	chr2	38429650	38430650	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78842.0	NM_010710	16870.0	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107314334-4	chr4	107313825	107314825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145550)	promoter-TSS (NM_145550)	-38.0	NM_145550	230584.0	Mm.29118	NM_145550	ENSMUSG00000057375	Yipf1	C030002N13Rik	Yip1 domain family, member 1	protein-coding	19.0	41.5	40.0	51.0	82.0	76.5
Merged-chr12-8927818-4	chr12	8927338	8928338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008640, intron 1 of 6)	MTD|LTR|ERVL-MaLR	6531.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44457956-2	chr10	44457456	44458456	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007548, intron 1 of 6)	intron (NM_007548, intron 1 of 6)	792.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-3718171-4	chr16	3717662	3718662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161790)	promoter-TSS (NM_001161790)	-38.0	NM_001161791	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121706929-4	chr11	121706439	121707439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144797, intron 1 of 3)	intron (NM_144797, intron 1 of 3)	4512.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35904581-4	chr16	35904077	35905077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33195.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72868507-4	chr5	72867995	72868995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113460)	promoter-TSS (NM_001113460)	-47.0	NM_001113460	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4811703-4	chr19	4811220	4812220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019869)	promoter-TSS (NM_019869)	-86.0	NM_019869	56275.0	Mm.276338	NM_019869	ENSMUSG00000006456	Rbm14	1300007E16Rik|PSP2|Sytip|p16|p16K	RNA binding motif protein 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52090339-6	chr3	52089802	52090802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	14704.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17635170-4	chr6	17634661	17635661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1849.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	24.0	67.5	62.5	8.5	83.5	27.0
Merged-chr11-115062205-4	chr11	115061703	115062703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172050)	promoter-TSS (NM_172050)	-164.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154372705-4	chr2	154372214	154373214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025876)	promoter-TSS (NM_025876)	5.0	NM_025876	66971.0	Mm.289427	NM_025876	ENSMUSG00000027487	Cdk5rap1	2310066P17Rik	CDK5 regulatory subunit associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144555383-2	chr2	144554883	144555883	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019787)	promoter-TSS (NM_019787)	-846.0	NM_001252544	27054.0	Mm.248492	NM_019787	ENSMUSG00000027429	Sec23b	-	SEC23 homolog B, COPII coat complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141447651-4	chr7	141447145	141448145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360657)	promoter-TSS (NM_001360657)	-6.0	NM_026020	67186.0	Mm.380435	NM_026020	ENSMUSG00000025508	Rplp2	2700049I22Rik	ribosomal protein, large P2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36067950-4	chr16	36067450	36068450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027342, intron 1 of 4)	intron (NM_027342, intron 1 of 4)	3565.0	NM_027342	70186.0	Mm.212991	NM_027342	ENSMUSG00000003955	Fam162a	2310056P07Rik|HGTD-P	family with sequence similarity 162, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61469500-4	chr11	61468988	61469988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15496.0	NM_001291024	22671.0	Mm.89201	NM_009548	ENSMUSG00000010086	Rnf112	ZNF179|Zfp179|bfp|neurolastin	ring finger protein 112	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126024653-4	chr4	126024174	126025174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045561)	promoter-TSS (NR_045561)	15.0	NM_001252651	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	37.0	136.0	50.0	42.0	108.5	63.5
Merged-chr5-114827625-4	chr5	114827123	114828123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4155.0	NM_181075	330173.0	Mm.482205	NM_181075	ENSMUSG00000092486	2610524H06Rik	-	RIKEN cDNA 2610524H06 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91096729-4	chr2	91096243	91097243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011355)	promoter-TSS (NM_011355)	65.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93918031-2	chr16	93917531	93918531	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019500)	TTS (NM_019500)	11536.0	NM_001165925	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr17-26516658-1	chr17	26516158	26517158	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-8186.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr1-170174334-4	chr1	170173864	170174864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133806, intron 1 of 10)	intron (NM_133806, intron 1 of 10)	600.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44476617-4	chr11	44476113	44477113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-6065.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140419341-4	chr5	140418837	140419837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133916)	promoter-TSS (NM_133916)	32.0	NM_133916	27979.0	Mm.21671	NM_133916	ENSMUSG00000056076	Eif3b	AL033316|AL033334|AL033369|AW208965|D5Wsu45e|EIF3-ETA|EIF3-P110|EIF3-P116|Eif3s9|PRT1	eukaryotic translation initiation factor 3, subunit B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-105051626-1	chr13	105051126	105052126	+	1000.0	f0_balb.idr	intron (NM_029879, intron 2 of 5)	intron (NM_029879, intron 2 of 5)	3304.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70175444-4	chr14	70174945	70175945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145978, intron 1 of 9)	intron (NM_145978, intron 1 of 9)	1370.0	NM_001253736	213019.0	Mm.283968	NM_145978	ENSMUSG00000022090	Pdlim2	4732462F18Rik|Slim	PDZ and LIM domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180835384-4	chr1	180834892	180835892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15759.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30194051-4	chr7	30193534	30194534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009795, exon 2 of 11)	exon (NM_009795, exon 2 of 11)	1119.0	NM_009795	12336.0	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|Cdps|Css1|D7Ertd146e	calpain, small subunit 1	protein-coding	24.5	52.0	53.0	19.5	61.0	44.0
Merged-chr2-34944345-2	chr2	34943845	34944845	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009421, intron 10 of 10)	intron (NM_009421, intron 10 of 10)	17427.0	NM_009421	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65201671-4	chr9	65201180	65202180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13010.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5117997-2	chr19	5117497	5118497	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045528, intron 1 of 15)	CpG	411.0	NR_045528	16594.0	Mm.271648	NM_008451	ENSMUSG00000024862	Klc2	8030455F02Rik|AW212649|KLC 2|KLC-2	kinesin light chain 2	protein-coding	0.0	4.0	4.5	5.5	1.5	11.0
Merged-chr5-91960684-2	chr5	91960184	91961184	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026557, intron 1 of 8)	intron (NM_026557, intron 1 of 8)	1872.0	NR_073442	68098.0	Mm.159453	NM_026557	ENSMUSG00000029397	Rchy1	ARNIP|CHIMP|Pirh2|Zfp363|Znf363	ring finger and CHY zinc finger domain containing 1	protein-coding	0.0	10.5	1.5	0.0	0.0	2.0
Merged-chr2-142858636-2	chr2	142858136	142859136	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 3 of 26)	intron (NM_001355123, intron 3 of 26)	42828.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117120012-4	chr5	117119504	117120504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199685)	promoter-TSS (NM_001199685)	-125.0	NM_001199685	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	8.5	80.0	47.0	0.0	0.0	0.0
Merged-chr19-18631403-4	chr19	18630907	18631907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145497)	promoter-TSS (NM_145497)	406.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	39.5	112.5	83.0	45.0	58.5	51.5
Merged-chr1-155083581-4	chr1	155083067	155084067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151545)	promoter-TSS (NR_151545)	-303.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116221385-5	chr4	116220967	116221967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355584)	promoter-TSS (NM_001355584)	51.0	NM_001355585	18710.0	Mm.253819	NM_181585	ENSMUSG00000028698	Pik3r3	AA414954|p55|p55pik	phosphoinositide-3-kinase regulatory subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42129740-2	chr19	42129240	42130240	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027106)	promoter-TSS (NM_027106)	-747.0	NM_027106	69534.0	Mm.30060	NM_027106	ENSMUSG00000018821	Avpi1	2310008N12Rik|AA410041|VIT32|esu|mVIT32	arginine vasopressin-induced 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-40081231-4	chr1	40080723	40081723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037980, intron 3 of 3)	MTC|LTR|ERVL-MaLR	-3491.0	NM_010555	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67271863-4	chr10	67271363	67272363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001036293, intron 2 of 3)	intron (NM_001036293, intron 2 of 3)	13418.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-62786792-4	chr16	62786284	62787284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178925)	promoter-TSS (NM_178925)	-68.0	NM_178925	106338.0	Mm.26321	NM_178925	ENSMUSG00000050312	Nsun3	6720484A09Rik|AU022521	NOL1/NOP2/Sun domain family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6299678-4	chr19	6299168	6300168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010119, exon 5 of 5)	3' UTR (NM_010119, exon 5 of 5)	-6789.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-74578976-4	chr2	74578482	74579482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027133)	promoter-TSS (NM_027133)	-34.0	NM_027133	69605.0	Mm.156113	NM_027133	ENSMUSG00000009207	Lnpk	2310011O18Rik|4921514L11Rik|9530051D01Rik|AI666268|Lnp|Lnpk1|Ul|ulnaless	lunapark, ER junction formation factor	protein-coding	4.5	20.0	29.5	7.0	15.5	21.0
Merged-chr5-137871795-4	chr5	137871304	137872304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024932)	promoter-TSS (NM_001024932)	-46.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111691426-4	chr12	111690925	111691925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13320.0	NM_177374	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-43352026-4	chr11	43351527	43352527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22434.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57924261-4	chr15	57923770	57924770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356310, intron 3 of 19)	L1M2|LINE|L1	12071.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75678440-4	chr15	75677935	75678935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028404, intron 1 of 13)	intron (NM_028404, intron 1 of 13)	365.0	NM_001355589	72960.0	Mm.182401	NM_028404	ENSMUSG00000000934	Top1mt	2900052H09Rik	DNA topoisomerase 1, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-63936479-4	chr7	63935951	63936951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	2464.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	32.0	68.5	46.5	35.0	96.5	33.0
Merged-chr14-48896410-1	chr14	48895910	48896910	+	1000.0	f0_balb.idr	Intergenic	LTR33A_|LTR|ERVL	17537.0	NR_033783	66770.0	Mm.136954	NR_033783	ENSMUSG00000115008	4933429O19Rik	1700031B11Rik	RIKEN cDNA 4933429O19 gene	ncRNA	0.0	8.0	6.5	0.0	1.5	6.0
Merged-chr6-34177087-4	chr6	34176584	34177584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021435)	promoter-TSS (NM_021435)	-30.0	NM_021435	58246.0	Mm.245527	NM_021435	ENSMUSG00000018999	Slc35b4	4930474D06Rik|AB041549|AW494345	solute carrier family 35, member B4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41477323-4	chr10	41476832	41477832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358838)	promoter-TSS (NM_001358838)	-678.0	NM_001358838	171580.0	Mm.290431	NM_138315	ENSMUSG00000019823	Mical1	MICAL|MICAL-1|Nical	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32387000-2	chr17	32386500	32387500	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033525, intron 2 of 10)	L2b|LINE|L2	817.0	NM_212438	22404.0	Mm.274948	NM_011717	ENSMUSG00000024050	Wiz	-	widely-interspaced zinc finger motifs	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80387783-4	chr10	80387289	80388289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198615)	promoter-TSS (NM_198615)	-138.0	NM_198615	237400.0	Mm.268389	NM_198615	ENSMUSG00000048696	Mex3d	BC059858|Rkhd1	mex3 RNA binding family member D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89338855-4	chr6	89338353	89339353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008881, intron 9 of 31)	intron (NM_008881, intron 9 of 31)	23760.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-112023499-7	chr7	112023018	112024018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177249)	promoter-TSS (NM_177249)	12.0	NM_177249	74996.0	Mm.16974	NM_133758	ENSMUSG00000059263	Usp47	4930502N04Rik|A630020C16Rik	ubiquitin specific peptidase 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77442849-4	chr11	77442350	77443350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 13 of 14)	intron (NM_177710, intron 13 of 14)	-21063.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35495569-4	chr8	35495060	35496060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026067)	promoter-TSS (NM_026067)	-27.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	37.0	142.0	132.5	62.5	92.5	48.5
Merged-chr10-117063466-2	chr10	117062966	117063966	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001358767)	promoter-TSS (NM_001358767)	-91.0	NM_001358767	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120745452-4	chr8	120744952	120745952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301811, intron 3 of 8)	intron (NM_001301811, intron 3 of 8)	6813.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50650030-4	chr15	50649506	50650506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	239043.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-68301016-1	chr18	68300516	68301516	+	1000.0	f0_c57.idr	promoter-TSS (NM_153794)	promoter-TSS (NM_153794)	596.0	NM_001361003	67897.0	Mm.27544	NM_026440	ENSMUSG00000009535	Rnmt	2610002P10Rik|AI848273|Rg7mt1|mKIAA0398	RNA (guanine-7-) methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32414973-2	chr18	32414473	32415473	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009668, exon 7 of 19)	exon (NM_009668, exon 7 of 19)	-36689.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87906188-4	chr3	87905695	87906695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331052)	promoter-TSS (NM_001331052)	-126.0	NM_008231	15191.0	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	27.0	60.5	34.5	25.0	65.5	43.5
Merged-chr11-96862105-4	chr11	96861599	96862599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019877)	TTS (NM_019877)	11706.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	1.0	1.0	0.0	1.0	1.0	0.0
Merged-chr1-74287482-2	chr1	74286982	74287982	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027154)	TTS (NM_027154)	2448.0	NM_001039509	56695.0	Mm.384726	NM_019999	ENSMUSG00000026179	Pnkd	2210013N15Rik|2810403H05Rik|AI854243|Brp17|MNCb-5687|MR-1|Tahccp2	paroxysmal nonkinesiogenic dyskinesia	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96751725-4	chr10	96751210	96752210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134709.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30421713-4	chr7	30421255	30422255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360906)	promoter-TSS (NM_001360906)	24.0	NM_001360906	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	194.0	517.5	432.5	298.0	502.0	442.0
Merged-chr8-69900925-2	chr8	69900297	69901297	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023312, intron 2 of 4)	intron (NM_023312, intron 2 of 4)	-1387.0	NM_032004	83984.0	Mm.432504	NM_032004	ENSMUSG00000047654	Tssk6	Sstk|TSK-6|TSSK-6	testis-specific serine kinase 6	protein-coding	2.0	9.5	5.5	7.0	8.5	6.5
Merged-chr17-29034391-2	chr17	29033891	29034891	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_036613, intron 1 of 6)	ID4|SINE|ID	1731.0	NR_036613	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	1.0	20.5	7.5	1.0	20.5	7.5
Merged-chr1-128705353-4	chr1	128704860	128705860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113061.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	53.5	55.5	58.0	37.5	60.5	56.0
Merged-chr10-58406072-4	chr10	58405567	58406567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359116, intron 2 of 9)	ORR1E|LTR|ERVL-MaLR	11694.0	NM_001346676	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-124693614-4	chr4	124693088	124694088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026031)	promoter-TSS (NM_026031)	-34.0	NM_026031	67205.0	Mm.259121	NM_026031	ENSMUSG00000028907	Utp11	2700082D03Rik|CGI-94|Cgi94|Utp11l	UTP11 small subunit processome component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62457398-4	chr11	62456914	62457914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177229)	promoter-TSS (NM_177229)	-82.0	NM_177229	20185.0	Mm.271814	NM_011308	ENSMUSG00000018501	Ncor1	5730405M06Rik|A230020K14Rik|N-CoR|RIP13|Rxrip13|mKIAA1047	nuclear receptor co-repressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67536837-4	chr10	67536315	67537315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1054.0	NM_010118	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29654015-4	chr11	29653507	29654507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-38891.0	NM_194053	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	28.0	22.0	14.5	6.0	30.0	25.5
Merged-chr7-64357662-4	chr7	64357160	64358160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177893, intron 8 of 13)	MLTR14|LTR|ERV1	16435.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102968500-4	chr2	102968002	102969002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66837.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	37.0	74.5	52.0	43.5	75.5	70.5
Merged-chr11-98360230-2	chr11	98359730	98360730	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021547, intron 1 of 14)	B1_Mus1|SINE|Alu	1862.0	NM_021547	59045.0	Mm.265546	NM_021547	ENSMUSG00000018167	Stard3	Mln64|es64	START domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21238869-4	chr9	21238480	21239480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_016679, exon 1 of 5)	5' UTR (NM_016679, exon 1 of 5)	352.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127244484-4	chr7	127243986	127244986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177362)	promoter-TSS (NM_177362)	-40.0	NM_177362	244216.0	Mm.41038	NM_177362	ENSMUSG00000054716	Zfp771	G630024C07Rik|Znf771	zinc finger protein 771	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9149630-4	chr13	9149146	9150146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 8 of 17)	intron (NM_172585, intron 8 of 17)	55765.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41523415-4	chr10	41522898	41523898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016898, intron 3 of 5)	intron (NM_016898, intron 3 of 5)	3898.0	NM_016898	53599.0	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33799458-4	chr17	33798968	33799968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-11055.0	NM_001357162	80880.0	Mm.196330	NM_030697	ENSMUSG00000042099	Kank3	0610013D04Rik|Ankrd47|D17Ertd288e|NG28	KN motif and ankyrin repeat domains 3	protein-coding	15.0	25.0	25.0	13.0	10.5	4.0
Merged-chr2-122377984-4	chr2	122377466	122378466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9048.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	89.0	269.0	199.0	127.0	296.0	194.0
Merged-chr19-7383029-4	chr19	7382507	7383507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167831)	promoter-TSS (NM_001167831)	4.0	NR_045703	654802.0	Mm.414924	NR_045703		1700105P06Rik	-	RIKEN cDNA 1700105P06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84034259-4	chr12	84033752	84034752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-4127.0	NM_134247	171282.0	Mm.482217	NM_134247	ENSMUSG00000052392	Acot4	B430212I04Rik|PTE-Ib|Pte1b|Pte2b	acyl-CoA thioesterase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171849678-4	chr1	171849167	171850167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289470, intron 2 of 8)	intron (NM_001289470, intron 2 of 8)	9970.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	160.5	341.0	156.0	103.0	189.0	158.5
Merged-chr11-76407280-2	chr11	76406780	76407780	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_023355, exon 1 of 3)	exon (NM_023355, exon 1 of 3)	137.0	NM_019818	56322.0	Mm.18803	NM_019818	ENSMUSG00000020843	Timm22	Tim22	translocase of inner mitochondrial membrane 22	protein-coding	16.0	54.0	24.0	40.0	37.5	26.5
Merged-chr1-85735918-4	chr1	85735410	85736410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177055, intron 1 of 5)	intron (NM_177055, intron 1 of 5)	696.0	NM_177055	319997.0	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86532554-4	chr1	86532047	86533047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5990.0	NM_001360830	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98880909-4	chr10	98880415	98881415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-33727.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12014432-2	chr19	12013932	12014932	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	22308.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58401610-4	chr13	58401140	58402140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_031761)	promoter-TSS (NR_031761)	477.0	NM_001360494	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134452505-4	chr5	134451956	134452956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081462, intron 1 of 29)	intron (NM_001081462, intron 1 of 29)	3806.0	NM_001081465	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59163527-4	chr11	59163124	59164124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001270791, exon 1 of 2)	exon (NM_001270791, exon 1 of 2)	121.0	NM_001270791	216792.0	Mm.266175	NM_173785	ENSMUSG00000049287	Iba57	4930543L23Rik|A230051G13Rik|C1orf69	IBA57 homolog, iron-sulfur cluster assembly	protein-coding	93.5	331.0	224.0	95.5	368.5	233.0
Merged-chr12-111814018-4	chr12	111813502	111814502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028875)	promoter-TSS (NM_028875)	-123.0	NM_028875	74335.0	Mm.19082	NM_028875	ENSMUSG00000021287	Xrcc3	-	X-ray repair complementing defective repair in Chinese hamster cells 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69184645-4	chr12	69184125	69185125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025589)	promoter-TSS (NM_025589)	467.0	NM_146035	217664.0	Mm.206642	NM_146035	ENSMUSG00000043998	Mgat2	AA407964|CDGS2|GLCNACTII|GNT-II|GNT2	mannoside acetylglucosaminyltransferase 2	protein-coding	21.0	19.0	45.0	6.5	6.5	17.5
Merged-chr14-55781428-4	chr14	55780862	55781862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080435, intron 4 of 25)	intron (NM_080435, intron 4 of 25)	2710.0	NM_080435	104110.0	Mm.287010	NM_080435	ENSMUSG00000022220	Adcy4	mKIAA4004	adenylate cyclase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84967098-2	chr15	84966598	84967598	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033273, intron 1 of 9)	RMER2|LTR|ERV1	-15475.0	NR_037206	100526461.0		NR_037206	ENSMUSG00000080441	Mir1249	mir-1249|mmu-mir-1249	microRNA 1249	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5818876-2	chr19	5818376	5819376	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16204.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-106651023-4	chr4	106650526	106651526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285784)	promoter-TSS (NM_001285784)	-43.0	NM_001285783	230577.0	Mm.134029	NM_172272	ENSMUSG00000043572	Pars2	BC027073	prolyl-tRNA synthetase (mitochondrial)(putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6233554-2	chr19	6233054	6234054	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198168, intron 3 of 13)	intron (NM_198168, intron 3 of 13)	2286.0	NM_198168	225849.0	Mm.118076	NM_198168	ENSMUSG00000024777	Ppp2r5b	B'beta|BC026670	protein phosphatase 2, regulatory subunit B', beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80256244-2	chr10	80255744	80256744	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029272, intron 7 of 7)	intron (NM_029272, intron 7 of 7)	4768.0	NM_001347119	14431.0	Mm.7329	NM_010255	ENSMUSG00000020150	Gamt	AA571402|Spintz1	guanidinoacetate methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101264271-2	chr15	101263771	101264771	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2575.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	6.0	9.0	6.0	6.5	11.5	8.5
Merged-chr3-101604713-4	chr3	101604202	101605202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144900)	promoter-TSS (NM_144900)	5.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119428891-4	chr13	119428394	119429394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145457)	promoter-TSS (NM_145457)	-8.0	NM_145457	218693.0	Mm.490243	NM_145457	ENSMUSG00000025451	Paip1	PAIP-1	polyadenylate binding protein-interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124622207-4	chr2	124621691	124622691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	MTE2a|LTR|ERVL-MaLR	11895.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136135581-2	chr5	136135081	136136081	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347492)	promoter-TSS (NM_001347492)	493.0	NM_027891	71735.0	Mm.425292	NM_027891	ENSMUSG00000029703	Lrwd1	1200011O22Rik|AU042569|AW548074|Orca	leucine-rich repeats and WD repeat domain containing 1	protein-coding	7.0	3.0	0.5	9.5	3.0	5.5
Merged-chr1-120533117-2	chr1	120532623	120533623	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28099.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	32.0	21.0	16.5	20.0	28.0	13.5
Merged-chr18-77944887-4	chr18	77944388	77945388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195633, intron 1 of 43)	L1MC4a|LINE|L1	6421.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-113397889-4	chr2	113397400	113398400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285458, intron 2 of 16)	intron (NM_001285458, intron 2 of 16)	-43164.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	102.0	161.0	134.0	108.5	178.5	154.5
Merged-chr6-51544571-4	chr6	51544032	51545032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127348)	promoter-TSS (NM_001127348)	9.0	NM_001127348	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106415330-4	chr8	106414820	106415820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011764)	promoter-TSS (NM_011764)	-19.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-43681861-4	chr11	43681351	43682351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164231)	promoter-TSS (NM_001164231)	-147.0	NM_027557	70802.0	Mm.397449	NM_027557	ENSMUSG00000044950	Pwwp2a	4631424J17Rik|AI891583|AU024105|D930040F23Rik	PWWP domain containing 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-56973257-4	chr1	56972767	56973767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_024325, exon 1 of 1)	non-coding (NR_024325, exon 1 of 1)	1798.0	NR_024326	329160.0	Mm.419039	NR_024325	ENSMUSG00000087022	9130024F11Rik	B530002L08|EG329160	RIKEN cDNA 9130024F11 gene	ncRNA	1.0	5.0	4.5	3.0	16.0	4.5
Merged-chr19-46329276-2	chr19	46328776	46329776	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164295)	TTS (NM_001164295)	1092.0	NM_133694	68431.0	Mm.19973	NM_133694	ENSMUSG00000025226	Fbxl15	0710008C12Rik|Fbxo37	F-box and leucine-rich repeat protein 15	protein-coding	2.5	1.5	0.5	0.0	1.5	0.0
Merged-chr8-119840607-4	chr8	119840094	119841094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028071)	promoter-TSS (NM_028071)	-15.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127587895-4	chr10	127587400	127588400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 15 of 88)	intron (NM_008512, intron 15 of 88)	33248.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	32.0	41.5	25.5	15.5	40.5	29.5
Merged-chr9-78113279-4	chr9	78112775	78113775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019987)	promoter-TSS (NM_019987)	37.0	NM_019987	56542.0	Mm.288719	NM_019987	ENSMUSG00000009828	Ick	2210420N10Rik|AI848300|Mrk	intestinal cell kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-74952916-4	chr9	74952431	74953431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113283)	promoter-TSS (NM_001113283)	51.0	NR_153342	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	57.5	122.0	86.0	49.5	66.0	69.0
Merged-chr9-44361711-4	chr9	44361187	44362187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357393)	promoter-TSS (NM_001357393)	-17.0	NM_027889	71732.0	Mm.295013	NM_027889	ENSMUSG00000032127	Vps11	1200011A11Rik	VPS11, CORVET/HOPS core subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-124709153-4	chr4	124708630	124709630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010213)	TTS (NM_010213)	-5731.0	NM_029157	75062.0	Mm.25779	NM_029157	ENSMUSG00000028902	Sf3a3	4930512K19Rik|60kDa	splicing factor 3a, subunit 3	protein-coding	36.5	88.0	45.0	32.5	89.5	66.0
Merged-chr12-72085080-4	chr12	72084643	72085643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205067)	promoter-TSS (NM_001205067)	170.0	NM_026038	67217.0	Mm.286120	NM_026038	ENSMUSG00000019718	L3hypdh	2810055F11Rik	L-3-hydroxyproline dehydratase (trans-)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-45333247-4	chr8	45332740	45333740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133969)	promoter-TSS (NM_133969)	-44.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59184689-4	chr2	59184195	59185195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	23845.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-100833995-3	chr6	100833516	100834516	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182939, intron 1 of 8)	CpG	378.0	NM_182939	232314.0	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding	18.5	39.5	64.5	19.0	44.0	59.0
Merged-chr4-11454099-4	chr4	11453597	11454597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31861.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117786407-2	chr11	117785907	117786907	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001195088, exon 8 of 16)	exon (NM_001195088, exon 8 of 16)	3749.0	NM_001195088	217356.0	Mm.116675	NM_181856	ENSMUSG00000050106	Tmc8	EVIN2|Ever2|mFLJ00400	transmembrane channel-like gene family 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155903699-2	chr1	155903202	155904202	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039184, intron 22 of 37)	RMER1B|Other|Other	69553.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	34.0	24.5	27.0	1.0	11.5	3.0
Merged-chr2-180070589-4	chr2	180070029	180071029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083328)	promoter-TSS (NM_001083328)	-64.0	NM_001083328	52856.0	Mm.219658	NM_028422	ENSMUSG00000039069	Mtg2	1810011P19Rik|2900056P18Rik|D2Bwg0647e|Gtpbp5	mitochondrial ribosome associated GTPase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88863221-4	chr15	88862741	88863741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145478, exon 4 of 6)	exon (NM_145478, exon 4 of 6)	1047.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-57366978-4	chr14	57366503	57367503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030004, intron 2 of 7)	intron (NM_030004, intron 2 of 7)	31480.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45657366-6	chr14	45656899	45657899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_039593)	TTS (NR_039593)	654.0	NR_039593	100628600.0		NR_039593	ENSMUSG00000093167	Mir5131	mmu-mir-5131|mu-mir-5131	microRNA 5131	ncRNA	44.0	125.5	103.0	1.0	25.5	18.5
Merged-chr2-45110389-4	chr2	45109886	45110886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110572)	promoter-TSS (NR_110572)	-9.0	NM_001355291	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64360691-4	chr1	64360204	64361204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-172100.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-104742776-4	chr2	104742237	104743237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144804)	promoter-TSS (NM_144804)	64.0	NM_144804	211896.0	Mm.288805	NM_144804	ENSMUSG00000027173	Depdc7	AV216087	DEP domain containing 7	protein-coding	10.5	14.5	13.5	6.0	19.0	18.0
Merged-chr4-120879663-4	chr4	120879140	120880140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182929, intron 3 of 7)	MIR3|SINE|MIR	24841.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-15055141-4	chr2	15054631	15055631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029466)	promoter-TSS (NM_029466)	-231.0	NM_029466	75869.0	Mm.174068	NM_029466	ENSMUSG00000017418	Arl5b	4930587A11Rik|AW146430|Arl8	ADP-ribosylation factor-like 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114942221-4	chr5	114941722	114942722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028211)	promoter-TSS (NM_028211)	20.0	NM_028211	72357.0	Mm.292672	NM_028211	ENSMUSG00000029559	2210016L21Rik	-	RIKEN cDNA 2210016L21 gene	protein-coding	6.5	24.5	14.0	13.5	16.0	21.0
Merged-chr15-58140968-1	chr15	58140468	58141468	+	1000.0	f0_balb.idr	promoter-TSS (NM_001326599)	promoter-TSS (NM_001326599)	-398.0	NM_001326602	76773.0	Mm.26771	NM_029734	ENSMUSG00000022359	Wdyhv1	2410187C16Rik|AU014961|AW550036|Ntaq1	WDYHV motif containing 1	protein-coding	15.0	72.0	30.5	17.0	72.5	50.5
Merged-chr8-120113583-1	chr8	120113083	120114083	+	1000.0	f0_balb.idr	promoter-TSS (NM_001163762)	promoter-TSS (NM_001163762)	-569.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17587901-4	chr17	17587399	17588399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	36590.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	12.5	64.5	27.0	40.5	43.0	29.0
Merged-chr2-157513823-4	chr2	157513345	157514345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46233.0	NM_001291129	18111.0	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83594596-4	chr8	83594079	83595079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027179)	promoter-TSS (NM_027179)	-88.0	NM_134118	106529.0	Mm.352239	NM_027179	ENSMUSG00000031708	Tecr	2410016D23Rik|A230102P12Rik|AI173355|D17Ertd178e|Gpsn2|SC2	trans-2,3-enoyl-CoA reductase	protein-coding	148.5	379.5	188.0	63.5	171.0	117.0
Merged-chr11-107469122-4	chr11	107468683	107469683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	CpG	1537.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136244944-4	chr5	136244450	136245450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302939)	promoter-TSS (NM_001302939)	-10.0	NM_018825	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80901278-4	chr7	80900769	80901769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027976)	promoter-TSS (NR_027976)	0.0	NR_152101	71968.0	Mm.274226	NM_028026	ENSMUSG00000025722	Wdr73	1200011I23Rik|2410008B13Rik|AI848574|C85352	WD repeat domain 73	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8604947-4	chr11	8604430	8605430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	59605.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-48333005-6	chr2	48332468	48333468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-481141.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-136326060-4	chr3	136325541	136326541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310749)	promoter-TSS (NM_001310749)	25.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	23.0	50.5	41.5	23.0	41.5	30.0
Merged-chr5-99974201-2	chr5	99973701	99974701	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077266, intron 1 of 7)	intron (NM_001077266, intron 1 of 7)	4737.0	NM_001077266	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-37868869-3	chr16	37868345	37869345	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177093, exon 1 of 4)	exon (NM_177093, exon 1 of 4)	445.0	NM_177093	320184.0	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-124037933-4	chr9	124037459	124038459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26B_MM|LTR|ERVK	15988.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-85748905-4	chr9	85748414	85749414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175371, intron 1 of 27)	CpG	420.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-37313624-4	chr3	37313137	37314137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001255992, intron 1 of 1)	L2|LINE|L2	1083.0	NM_001008502	241950.0	Mm.32171	NM_001008502	ENSMUSG00000051444	Bbs12	Gm1805|Gm407|Gm721	Bardet-Biedl syndrome 12 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28377542-4	chr7	28377020	28378020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011756, exon 2 of 2)	3' UTR (NM_011756, exon 2 of 2)	1708.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148483457-4	chr5	148482959	148483959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68214.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87914043-4	chr6	87913541	87914541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173737)	promoter-TSS (NM_173737)	65.0	NM_173737	232210.0	Mm.246241	NM_173737	ENSMUSG00000030060	Hmces	8430410A17Rik|C85376	5-hydroxymethylcytosine (hmC) binding, ES cell specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-77304743-4	chr2	77304238	77305238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24146.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102296604-4	chr12	102296103	102297103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	12962.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	1.0	11.0	12.0	13.0	32.0	32.0
Merged-chr12-8922967-4	chr12	8922474	8923474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008640, intron 1 of 6)	intron (NM_008640, intron 1 of 6)	1667.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-31247605-4	chr9	31247096	31248096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23805.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-9430077-4	chr15	9429574	9430574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5954.0	NM_029341	75568.0	Mm.82143	NM_029341	ENSMUSG00000039676	Capsl	1700028N11Rik|AW125205	calcyphosine-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-109968004-4	chr7	109967507	109968507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7537.0	NM_001311139	19347.0	Mm.21904	NM_021494	ENSMUSG00000035901	Dennd5a	1500012B19Rik|AJ245569|AW496491|ORF37|Rab6ip1|mKIAA1091	DENN/MADD domain containing 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12224604-4	chr18	12224119	12225119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008720, intron 1 of 24)	intron (NM_008720, intron 1 of 24)	11767.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	72.0	163.0	131.5	93.0	208.0	164.0
Merged-chr16-97536004-4	chr16	97535519	97536519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003508)	promoter-TSS (NR_003508)	-62.0	NR_003508	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	94.5	229.0	150.5	102.0	314.5	196.0
Merged-chr7-64279727-4	chr7	64279201	64280201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4A|LINE|L1	-7969.0	NM_172742	233315.0	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-85832282-4	chr15	85831778	85832778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033337)	promoter-TSS (NM_001033337)	-26.0	NM_001033337	239570.0	Mm.151748	NM_001033337	ENSMUSG00000035944	Ttc38	9030019H09	tetratricopeptide repeat domain 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132303348-4	chr4	132302873	132303873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081651)	promoter-TSS (NM_001081651)	-17.0	NM_001081651	242681.0	Mm.331927	NM_001081651	ENSMUSG00000089687	Rab42	9530096D07Rik|Rab42-ps	RAB42, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6723822-4	chr2	6723329	6724329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 3 of 15)	intron (NM_001110232, intron 3 of 15)	-2167.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-14669097-2	chr19	14668597	14669597	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70914.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72439128-4	chr6	72438625	72439625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_046011, exon 1 of 1)	non-coding (NR_046011, exon 1 of 1)	433.0	NM_145569	232087.0	Mm.29815	NM_145569	ENSMUSG00000053907	Mat2a	D630045P18Rik	methionine adenosyltransferase II, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21137072-2	chr9	21136572	21137572	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-5797.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5569287-4	chr17	5568792	5569792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	76692.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31348631-2	chr15	31348131	31349131	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027496, intron 1 of 3)	intron (NM_027496, intron 1 of 3)	19128.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60644799-4	chr13	60644291	60645291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	ORR1E|LTR|ERVL-MaLR	42580.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	10.5	73.0	29.0	32.5	48.0	35.0
Merged-chr11-50025030-4	chr11	50024541	50025541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290749)	promoter-TSS (NM_001290749)	-290.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0.0	0.0	5.0	42.5	106.0	59.5
Merged-chr15-99457847-4	chr15	99457339	99458339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001884)	promoter-TSS (NM_001001884)	-91.0	NM_001001884	380969.0	Mm.22915	NM_001001884	ENSMUSG00000023009	Nckap5l	C230021P08Rik|Cep169	NCK-associated protein 5-like	protein-coding	21.5	48.0	40.5	10.5	29.5	21.0
Merged-chr18-70476566-4	chr18	70476072	70477072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289650, intron 5 of 8)	intron (NM_001289650, intron 5 of 8)	3906.0	NM_001289650	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	2.5	3.0	13.5	10.0	17.0	5.5
Merged-chr12-99390914-4	chr12	99390412	99391412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 1 of 5)	intron (NM_183186, intron 1 of 5)	59162.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50944534-4	chr14	50944022	50945022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013632, exon 1 of 6)	5' UTR (NM_013632, exon 1 of 6)	219.0	NM_013632	18950.0	Mm.17932	NM_013632	ENSMUSG00000115338	Pnp	AL024301|AU015798|Np|Np-1|Np-2|Pnp1	purine-nucleoside phosphorylase	protein-coding	41.0	153.0	85.0	36.0	83.5	56.0
Merged-chr7-43637300-4	chr7	43636763	43637763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028236, intron 2 of 5)	intron (NM_028236, intron 2 of 5)	2524.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-7817956-4	chr14	7817466	7818466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134080)	promoter-TSS (NM_134080)	9.0	NM_134080	286940.0	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61920594-4	chr8	61920075	61921075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7512.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	31.5	60.0	59.5	30.0	58.5	60.5
Merged-chr4-55593279-2	chr4	55592779	55593779	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60804.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.5	2.5	1.5	0.5	5.5	1.0
Merged-chr2-60815031-4	chr2	60814538	60815538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	66400.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97988177-4	chr11	97987683	97988683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1737.0	NM_001163608	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	53.0	98.5	56.5	39.5	71.0	82.5
Merged-chr2-11713646-4	chr2	11713146	11714146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271499, intron 1 of 6)	RLTR17|LTR|ERVK	7934.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69408746-4	chr11	69408252	69409252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001017426, exon 2 of 23)	5' UTR (NM_001017426, exon 2 of 23)	4923.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	1.5	1.0	3.5	0.0	1.5	0.0
Merged-chr8-45975866-4	chr8	45975374	45976374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033148)	promoter-TSS (NM_001033148)	346.0	NM_138668	192169.0	Mm.210882	NM_138668	ENSMUSG00000031634	Ufsp2	1810047C23Rik	UFM1-specific peptidase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-42254049-4	chr13	42253553	42254553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47423.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128695831-3	chr10	128695341	128696341	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177411, intron 1 of 5)	intron (NM_177411, intron 1 of 5)	427.0	NM_177411	19344.0	Mm.12815	NM_011229	ENSMUSG00000000711	Rab5b	C030027M18Rik	RAB5B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126256473-4	chr4	126255975	126256975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144941)	promoter-TSS (NM_144941)	-156.0	NM_001145970	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	42.5	108.0	80.5	44.5	92.0	56.0
Merged-chr5-150594599-4	chr5	150594115	150595115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133898)	promoter-TSS (NM_133898)	-90.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-15150318-2	chr18	15149818	15150818	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134112, intron 1 of 4)	CpG	1128.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34077611-2	chr11	34077111	34078111	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 10 of 20)	(CCA)n|Simple_repeat|Simple_repeat	20943.0	NR_155520	76874.0	Mm.437529	NR_155520		4930469K13Rik	-	RIKEN cDNA 4930469K13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101741706-4	chr4	101741209	101742209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146146, intron 4 of 18)	intron (NM_146146, intron 4 of 18)	24302.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	261.5	510.5	386.0	127.0	256.0	259.0
Merged-chr12-69365999-4	chr12	69365493	69366493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6157.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120125334-4	chr10	120124843	120125843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12378.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	0.0	9.0	2.0	0.0	10.0	2.0
Merged-chr8-119353507-5	chr8	119353005	119354005	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	8967.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131258926-4	chr2	131258402	131259402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3106.0	NM_001355681	74450.0	Mm.101264	NM_153501	ENSMUSG00000037514	Pank2	4933409I19Rik|AI642621	pantothenate kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-130657959-4	chr7	130657441	130658441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004468, intron 3 of 21)	intron (NM_001004468, intron 3 of 21)	-34615.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-96548089-4	chr13	96547586	96548586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023420, intron 1 of 17)	intron (NM_023420, intron 1 of 17)	5351.0	NM_023420	68018.0	Mm.24125	NM_023420	ENSMUSG00000021669	Col4a3bp	2810404O15Rik|9230101K08Rik|AU016711|CERT|GPBP	collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-58382155-4	chr10	58381666	58382666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201242, intron 1 of 9)	intron (NM_201242, intron 1 of 9)	10712.0	NM_201242	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155158639-4	chr1	155158160	155159160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021433)	promoter-TSS (NM_021433)	-43.0	NM_021433	58244.0	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74770800-4	chr11	74770303	74771303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026197)	promoter-TSS (NM_026197)	-60.0	NM_026197	67493.0	Mm.45748	NM_026197	ENSMUSG00000010554	Mettl16	2610100D03Rik|2810013M15Rik|A830095F14Rik|AI846133|Mett10d	methyltransferase like 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91585682-1	chr6	91585182	91586182	+	1000.0	f0_balb.idr	Intergenic	Intergenic	69647.0	NM_026309	67678.0	Mm.246693	NM_026309	ENSMUSG00000034192	Lsm3	1010001J12Rik|2610005D18Rik|6030401D18Rik|SMX4|USS2	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-85189925-3	chr13	85189445	85190445	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023243, intron 1 of 8)	intron (NM_023243, intron 1 of 8)	560.0	NM_023243	66671.0	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	12.0	29.0	31.0	18.5	49.0	17.0
Merged-chr18-61489353-4	chr18	61488836	61489836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER102c|DNA|hAT-Charlie	-4729.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	4.0	6.5	4.0	4.0	7.0	9.0
Merged-chr5-140704521-1	chr5	140704021	140705021	+	1000.0	f0_c57.idr	promoter-TSS (NM_001276287)	promoter-TSS (NM_001276287)	-490.0	NM_181066	231841.0	Mm.271932	NM_172724	ENSMUSG00000000148	Brat1	AA881470|Baat1	BRCA1-associated ATM activator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5846766-4	chr19	5846235	5847235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1255.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	128.0	203.0	128.0	87.0	223.5	160.0
Merged-chr2-90497661-2	chr2	90497161	90498161	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	RMER15|LTR|ERVL	-18487.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99464490-4	chr12	99463989	99464989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14415.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125720267-4	chr8	125719785	125720785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-13918.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148672562-4	chr2	148672061	148673061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019761)	promoter-TSS (NM_019761)	-54.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-81719359-4	chr12	81718863	81719863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001174107, exon 11 of 11)	3' UTR (NM_001174107, exon 11 of 11)	61807.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77956763-4	chr15	77956254	77957254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168260)	promoter-TSS (NM_001168260)	-32.0	NM_001017983	239554.0	Mm.295605	NM_001017983	ENSMUSG00000016552	Foxred2	A430097D04Rik|D15Bwg0759e|Gm304	FAD-dependent oxidoreductase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135726129-4	chr1	135725637	135726637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360782, intron 1 of 5)	intron (NM_001360782, intron 1 of 5)	-3030.0	NR_153810	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114699770-2	chr5	114699270	114700270	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR2a2_Mm|LTR|ERVK	-8009.0	NM_029992	77832.0	Mm.239698	NM_029992	ENSMUSG00000002486	Tchp	A930031F18Rik|AV279199	trichoplein, keratin filament binding	protein-coding	47.0	100.5	94.0	21.0	59.0	62.0
Merged-chr11-102185293-4	chr11	102184767	102185767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172947)	promoter-TSS (NM_172947)	-11.0	NM_172947	268490.0	Mm.259079	NM_172947	ENSMUSG00000020922	Lsm12	1110032E16Rik|1110059P07|2600001B17Rik	LSM12 homolog	protein-coding	14.5	32.5	27.0	17.5	26.0	29.0
Merged-chr19-3699660-4	chr19	3699144	3700144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8649.0	NM_001358256	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105348042-4	chr8	105347547	105348547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081332)	promoter-TSS (NM_001081332)	-77.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-92878813-4	chr7	92878377	92879377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028243, intron 1 of 8)	intron (NM_028243, intron 1 of 8)	3624.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118456453-2	chr11	118455953	118456953	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-1458.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66092317-4	chr15	66091816	66092816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152923, intron 1 of 14)	intron (NM_152923, intron 1 of 14)	-115512.0	NM_001145096	654498.0	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27166712-6	chr7	27166149	27167149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357767)	promoter-TSS (NM_001357767)	153.0	NM_053208	112406.0	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	10.5	45.5	38.0	13.5	8.0	31.5
Merged-chr18-60526332-7	chr18	60525839	60526839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001357462, exon 1 of 14)	exon (NM_001357462, exon 1 of 14)	185.0	NM_001357462	67665.0	Mm.272801	NM_026302	ENSMUSG00000024603	Dctn4	1110001K06Rik|4930547K17Rik|C130039E17Rik|p62	dynactin 4	protein-coding	24.5	42.0	21.5	2.5	32.5	26.5
Merged-chr11-69079047-4	chr11	69078549	69079549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	5623.0	NR_028566	100216530.0	Mm.453052	NR_028566	ENSMUSG00000064899	Snord118	MBI-34	small nucleolar RNA, C/D box 118	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111165665-4	chr10	111165155	111166155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003717, intron 1 of 22)	CpG	853.0	NM_175489	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81129547-4	chr10	81129038	81130038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6733.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-85072804-4	chr16	85072289	85073289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 5 of 15)	intron (NM_001198825, intron 5 of 15)	100578.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	100.5	213.0	131.0	81.0	174.0	128.5
Merged-chr11-75533643-2	chr11	75533143	75534143	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 2 of 13)	intron (NM_001199284, intron 2 of 13)	1531.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8521610-4	chr12	8521118	8522118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17948.0	NM_001038660	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	6.5	7.5	7.5	2.0	19.5	3.5
Merged-chr19-47461630-3	chr19	47461136	47462136	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	2775.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	20.5	24.0	16.0	25.0	52.5	26.0
Merged-chr8-84204187-4	chr8	84203704	84204704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4314.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	185.0	458.0	360.5	163.5	543.0	346.0
Merged-chr16-14352801-4	chr16	14352306	14353306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8752.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	15.0	52.5	41.0	19.5	74.0	41.0
Merged-chr12-80757994-2	chr12	80757494	80758494	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001008423, exon 2 of 2)	exon (NM_001008423, exon 2 of 2)	2721.0	NM_001008423	380768.0	Mm.29367	NM_001008423	ENSMUSG00000062961	Ccdc177	Gm1568	coiled-coil domain containing 177	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44089456-4	chr9	44088952	44089952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198092, intron 3 of 12)	intron (NM_198092, intron 3 of 12)	4532.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	1.0	19.5	3.0	4.5	16.0	12.5
Merged-chr11-4222530-4	chr11	4222016	4223016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028022)	TTS (NM_028022)	4265.0	NM_028022	71962.0	Mm.7852	NM_028022	ENSMUSG00000020424	Gatsl3	2410008K03Rik|Castor1	GATS protein-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-75276719-4	chr3	75276176	75277176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6598.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-33641890-4	chr8	33641359	33642359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178648, exon 1 of 8)	exon (NM_178648, exon 1 of 8)	117.0	NM_178648	108159.0	Mm.29301	NM_178648	ENSMUSG00000052906	Ubxn8	D0H8S2298E|Rep-8|Rep8h|Ubxd6	UBX domain protein 8	protein-coding	97.5	100.0	126.0	40.5	115.0	92.0
Merged-chr6-113661698-4	chr6	113661223	113662223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	23256.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64276488-4	chr15	64276007	64277007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	36166.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-57424097-4	chr14	57423605	57424605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009376)	promoter-TSS (NM_009376)	34.0	NM_009376	21821.0	Mm.4653	NM_009376	ENSMUSG00000040040	Ift88	AW552028|Tg737|Tg737Rpw|TgN737Rpw|Ttc10|flexo|fxo|orpk|polaris	intraflagellar transport 88	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43265393-4	chr17	43264909	43265909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4938.0	NM_133776	77596.0	Mm.159950	NM_133776	ENSMUSG00000041293	Adgrf1	5031409J19Rik|Gpr110|KPG_009	adhesion G protein-coupled receptor F1	protein-coding	2.5	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57892536-4	chr15	57892051	57893051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024207)	promoter-TSS (NM_024207)	-133.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59702544-4	chr10	59702060	59703060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291443)	promoter-TSS (NM_001291443)	-3.0	NM_001359267	216001.0	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104534576-4	chr8	104534074	104535074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301164)	promoter-TSS (NM_001301164)	63.0	NM_144931	234664.0	Mm.237670	NM_144931	ENSMUSG00000031878	Nae1	59kDa|Appbp1	NEDD8 activating enzyme E1 subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-22746962-4	chr2	22746443	22747443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27384.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71082122-4	chr17	71081662	71082662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083934, intron 17 of 36)	intron (NM_001083934, intron 17 of 36)	62605.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	30.5	75.5	61.0	80.0	86.0	80.0
Merged-chr7-97136624-4	chr7	97136133	97137133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	54882.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	29.5	59.0	53.5	29.0	37.5	66.0
Merged-chr16-91398277-4	chr16	91397767	91398767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 7 of 7)	intron (NM_001347258, intron 7 of 7)	-7968.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34799826-4	chr2	34799298	34800298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145522, exon 1 of 8)	5' UTR (NM_145522, exon 1 of 8)	114.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120882546-4	chr10	120882051	120883051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177092, intron 1 of 6)	intron (NM_177092, intron 1 of 6)	16420.0	NM_177092	320183.0	Mm.169755	NM_177092	ENSMUSG00000051236	Msrb3	D430026P16Rik|I-8-23|MsrB2	methionine sulfoxide reductase B3	protein-coding	5.5	4.0	7.5	1.0	10.5	16.0
Merged-chr9-94433640-4	chr9	94433133	94434133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	104448.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	16.5	40.5	14.0	11.5	8.5	25.5
Merged-chr3-89863876-4	chr3	89863386	89864386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32516.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23813578-4	chr18	23813092	23814092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	L1ME1|LINE|L1	9622.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	7.5	52.0	42.0	34.0	65.0	68.0
Merged-chr7-19405601-4	chr7	19405106	19406106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-1502.0	NM_001286039	232943.0	Mm.213403	NM_146182	ENSMUSG00000040714	Klc3	BC017147|Klct	kinesin light chain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5110582-4	chr6	5110082	5111082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 7 of 15)	intron (NM_181595, intron 7 of 15)	83364.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32407483-4	chr18	32406930	32407930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 2 of 17)	intron (NM_001360876, intron 2 of 17)	-29146.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37495474-4	chr19	37494929	37495929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30175.0	NR_131009	78640.0	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	17.5	43.5	27.0	19.5	50.5	32.5
Merged-chr14-63077951-2	chr14	63077451	63078451	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	22878.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-156087575-4	chr4	156087082	156088082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22416.0	NM_145557	230996.0	Mm.318925	NM_145557	ENSMUSG00000059939	9430015G10Rik	-	RIKEN cDNA 9430015G10 gene	protein-coding	14.5	33.5	20.0	13.5	18.0	9.0
Merged-chr2-92484743-4	chr2	92484244	92485244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24226.0	NM_145832	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6920466-2	chr19	6919966	6920966	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007953, intron 1 of 6)	intron (NM_007953, intron 1 of 6)	1342.0	NM_007953	26379.0	Mm.386776	NM_007953	ENSMUSG00000024955	Esrra	ERRalpha|Err1|Estrra|Nr3b1	estrogen related receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-19979987-4	chr16	19979502	19980502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183390, intron 1 of 6)	intron (NM_183390, intron 1 of 6)	3047.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-62643520-4	chr2	62643015	62644015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164477, intron 1 of 14)	intron (NM_001164477, intron 1 of 14)	2740.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12457547-4	chr19	12457035	12458035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3244.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	54.5	121.0	58.0	50.0	105.5	88.0
Merged-chr17-87265960-4	chr17	87265469	87266469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139295)	promoter-TSS (NM_139295)	-22.0	NM_139295	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	26.0	130.0	109.0	64.5	163.5	119.5
Merged-chr6-134065283-4	chr6	134064785	134065785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	29585.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	69.5	168.5	128.0	78.5	194.5	146.0
Merged-chr10-75950904-2	chr10	75950404	75951404	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2604.0	NM_001358532	22364.0	Mm.333851	NM_009514	ENSMUSG00000000903	Vpreb3	8HS-20|AI528709|Vpreb-3	pre-B lymphocyte gene 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120910519-2	chr14	120910027	120911027	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_023579)	promoter-TSS (NM_023579)	-667.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64503666-4	chr5	64503165	64504165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	26657.0	NR_045413	77382.0	Mm.366742	NR_045411	ENSMUSG00000105352	C030018K13Rik	-	RIKEN cDNA C030018K13 gene	ncRNA	9.5	10.5	5.5	11.0	5.0	14.0
Merged-chr19-44389783-3	chr19	44389285	44390285	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17924.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	13.0	32.0	26.5	3.5	49.5	53.5
Merged-chr10-8890695-3	chr10	8890189	8891189	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4619.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.0	0.0	2.0	0.5	3.0	6.0
Merged-chr7-80789263-4	chr7	80788762	80789762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	14069.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46881478-4	chr8	46880989	46881989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105398.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84511733-4	chr2	84511185	84512185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-4812.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105731757-4	chr5	105731257	105732257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	30947.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	23.0	66.5	43.5	29.5	83.0	61.5
Merged-chr3-149085026-3	chr3	149084527	149085527	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130392.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	9.0	27.5	17.0	32.5	40.5	27.0
Merged-chr7-48998254-7	chr7	48997721	48998721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	39148.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45660452-4	chr19	45659965	45660965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013907)	promoter-TSS (NM_013907)	-272.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	15.5	27.0	26.5	19.0	21.5	25.5
Merged-chr10-17772658-4	chr10	17772163	17773163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23556.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	63.0	180.5	143.5	69.0	162.0	70.5
Merged-chr17-69222518-4	chr17	69222016	69223016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	54690.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98814169-4	chr13	98813674	98814674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172591, intron 1 of 25)	L1MB7|LINE|L1	1275.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	28.5	40.5	80.5	25.0	68.0	50.0
Merged-chr4-134286809-2	chr4	134286309	134287309	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146156, intron 1 of 2)	CpG	444.0	NM_001163794	230809.0	Mm.22778	NM_146156	ENSMUSG00000050890	Pdik1l	BC027088|stk35l2	PDLIM1 interacting kinase 1 like	protein-coding	16.5	22.0	20.5	8.5	12.0	17.5
Merged-chr1-91034739-4	chr1	91034239	91035239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	Lx7|LINE|L1	-18705.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80853824-4	chr12	80853300	80854300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 3 of 6)	intron (NM_001242419, intron 3 of 6)	63268.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31128399-4	chr14	31127911	31128911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308091, intron 1 of 1)	intron (NM_001308091, intron 1 of 1)	519.0	NM_001308466	66487.0	Mm.379116	NM_001308091	ENSMUSG00000058351	Smim4	2010107H07Rik|Gm41122	small integral membrane protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54254021-4	chr14	54253521	54254521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113358)	promoter-TSS (NM_001113358)	-92.0	NM_010015	13135.0	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	204.5	402.0	205.0	140.5	358.5	227.5
Merged-chr2-153995915-2	chr2	153995415	153996415	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080811, intron 10 of 10)	intron (NM_001080811, intron 10 of 10)	-12361.0	NM_008953	19194.0	Mm.29197	NM_008953	ENSMUSG00000042459	Bpifa2	Bpifa2e|Psp	BPI fold containing family A, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114686312-2	chr11	114685812	114686812	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	10844.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97439150-4	chr6	97438650	97439650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	20136.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58711691-5	chr1	58711204	58712204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289704, intron 1 of 9)	CpG	213.0	NR_149256	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82569051-4	chr18	82568556	82569556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025251, intron 2 of 6)	intron (NM_001025251, intron 2 of 6)	14548.0	NM_001025254	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90898676-4	chr5	90898144	90899144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5255.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	66.5	128.5	110.5	60.0	140.0	93.0
Merged-chr5-34525808-4	chr5	34525300	34526300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011893)	promoter-TSS (NM_011893)	16.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137786822-4	chr5	137786318	137787318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144913)	promoter-TSS (NM_144913)	-117.0	NM_144913	231803.0	Mm.61193	NM_144913	ENSMUSG00000029726	Mepce	Bcdin3|D5Wsu46e	methylphosphate capping enzyme	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139493821-4	chr4	139493328	139494328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36720.0	NM_183148	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	40.0	56.5	63.0	24.5	37.5	32.5
Merged-chr2-92066877-4	chr2	92066383	92067383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42713.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24936051-4	chr16	24935538	24936538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-123601.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127478896-4	chr7	127478391	127479391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6330.0	NM_010183	14123.0	Mm.323505	NM_010183	ENSMUSG00000042423	Fbrs	Fbs|Fbs1	fibrosin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45414308-2	chr13	45413808	45414808	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24566.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	1.5	18.5	3.0	15.5	6.0	1.5
Merged-chr7-97332252-4	chr7	97331752	97332752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039039)	promoter-TSS (NM_001039039)	-71.0	NM_001039039	622320.0	Mm.334029	NM_001039039	ENSMUSG00000044952	Kctd21	EG622320	potassium channel tetramerisation domain containing 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-46788346-4	chr14	46787823	46788823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009919)	promoter-TSS (NM_009919)	34.0	NM_001355011	12793.0	Mm.3261	NM_009919	ENSMUSG00000015759	Cnih1	0610007J15|CNIH-1|Cnih	cornichon family AMPA receptor auxiliary protein 1	protein-coding	0.0	12.0	4.5	0.0	12.0	1.5
Merged-chr1-74380559-4	chr1	74380059	74381059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013612, intron 6 of 14)	intron (NM_013612, intron 6 of 14)	5356.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3823492-2	chr12	3822992	3823992	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	16332.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40765770-4	chr9	40765261	40766261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 2 of 6)	intron (NM_133733, intron 2 of 6)	-35512.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	44.0	141.0	65.5	15.5	133.0	76.5
Merged-chr2-153357003-4	chr2	153356505	153357505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039939, intron 2 of 11)	intron (NM_001039939, intron 2 of 11)	10866.0	NM_001039939	228790.0	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27194179-4	chr3	27193667	27194667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	L3|LINE|CR1	11163.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27774001-2	chr2	27773501	27774501	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63418.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51164536-4	chr14	51164031	51165031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2271.0	NM_019398	54159.0	Mm.377125	NM_019398	ENSMUSG00000059606	Rnase2b	Ear5|Raf4|mR5	ribonuclease, RNase A family, 2B (liver, eosinophil-derived neurotoxin)	protein-coding	47.5	124.0	60.5	65.0	73.5	60.0
Merged-chr19-8819432-4	chr19	8818952	8819952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081196)	promoter-TSS (NM_001081196)	51.0	NM_001081196	68693.0	Mm.476519	NM_001081196	ENSMUSG00000071659	Hnrnpul2	1110031M08Rik|AI465155|Hnrpul2	heterogeneous nuclear ribonucleoprotein U-like 2	protein-coding	14.0	71.0	53.5	20.5	71.5	54.0
Merged-chr1-36001098-4	chr1	36000574	36001574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-67326.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3136130-2	chr11	3135646	3136646	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 24 of 32)	intron (NM_030207, intron 24 of 32)	12125.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-47314125-4	chr4	47313644	47314644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009928)	TTS (NM_009928)	-39078.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-151973485-4	chr2	151972982	151973982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289151)	promoter-TSS (NM_001289151)	-88.0	NM_001289151	73847.0	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-17166609-4	chr19	17166149	17167149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181348, intron 9 of 19)	ORR1F|LTR|ERVL-MaLR	172856.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67317537-2	chr17	67317037	67318037	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	36922.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.0	3.5	0.5	0.0	0.0	0.0
Merged-chr5-136170214-4	chr5	136169721	136170721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178751, intron 1 of 2)	intron (NM_178751, intron 1 of 2)	435.0	NM_178751	269717.0	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46958996-4	chr18	46958509	46959509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178377, intron 1 of 6)	CpG	133.0	NM_178377	69456.0	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2|Tg(Vav1-icre)A2Kio|Vav-cre|Vav-iCre|Vav1-Cre|VavCre	COMM domain containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-140609759-4	chr6	140609245	140610245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14_RN|LTR|ERV1	-12918.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73970557-4	chr17	73970077	73971077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20381.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88503630-2	chr10	88503130	88504130	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001146690, exon 1 of 9)	exon (NM_001146690, exon 1 of 9)	340.0	NR_027477	212862.0	Mm.288897	NM_144807	ENSMUSG00000060002	Chpt1	-	choline phosphotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31065670-4	chr6	31065201	31066201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2608.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88727438-4	chr4	88726944	88727944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4936.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155235865-2	chr4	155235365	155236365	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13330.0	NM_001357191	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	16.0	39.5	21.5	14.5	68.5	45.0
Merged-chr18-80148905-2	chr18	80148405	80149405	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175028, intron 1 of 3)	Lx9|LINE|L1	2577.0	NM_175028	240442.0	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-72205632-4	chr11	72205157	72206157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155065, intron 1 of 19)	intron (NR_155065, intron 1 of 19)	1825.0	NR_155065	74477.0	Mm.289697	NM_028963	ENSMUSG00000020807	4933427D14Rik	C85113|Kiaa0753|MNR	RIKEN cDNA 4933427D14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31837626-4	chr16	31837130	31838130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357281, intron 12 of 22)	intron (NM_001357281, intron 12 of 22)	-41180.0	NM_013900	30060.0	Mm.30988	NM_013900	ENSMUSG00000022780	Meltf	CD228|MTf|Mfi2	melanotransferrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-12868295-4	chr10	12867800	12868800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6565.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	8.5	31.0	26.5	15.0	34.0	16.0
Merged-chr18-46859680-3	chr18	46859178	46860178	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029008, intron 1 of 19)	intron (NM_029008, intron 1 of 19)	9639.0	NM_029008	74574.0	Mm.26379	NM_029008	ENSMUSG00000024481	Lvrn	4833403I15Rik|APQ|Aqpep	laeverin	protein-coding	0.0	0.0	0.0	1.0	2.0	7.0
Merged-chr11-116130619-4	chr11	116130115	116131115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178802, exon 1 of 6)	exon (NM_178802, exon 1 of 6)	513.0	NM_178802	338364.0	Mm.439976	NM_178802	ENSMUSG00000054517	Trim65	4732463G12Rik	tripartite motif-containing 65	protein-coding	45.5	97.0	73.5	61.5	122.5	83.5
Merged-chr3-51196524-2	chr3	51196024	51197024	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-27923.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65107451-4	chr5	65106985	65107985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347355)	promoter-TSS (NM_001347355)	-83.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113500781-4	chr13	113500281	113501281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 1 of 6)	ORR1F|LTR|ERVL-MaLR	2063.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53760546-2	chr11	53760046	53761046	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3108.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31154322-4	chr5	31153813	31154813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008622)	promoter-TSS (NM_008622)	-62.0	NM_008622	17527.0	Mm.271923	NM_008622	ENSMUSG00000107283	Mpv17	Tg.Mpv17	MpV17 mitochondrial inner membrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38287296-4	chr2	38286795	38287795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146122)	promoter-TSS (NM_146122)	89.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61977478-4	chr9	61977033	61978033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 2 of 7)	MER20|DNA|hAT-Charlie	-30734.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-104742452-4	chr12	104741957	104742957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148948, intron 1 of 26)	intron (NM_148948, intron 1 of 26)	9495.0	NM_148948	192119.0	Mm.21135	NM_148948	ENSMUSG00000041415	Dicer1	1110006F08Rik|D12Ertd7e|mKIAA0928	dicer 1, ribonuclease type III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13373167-4	chr16	13372663	13373663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153588, intron 1 of 14)	intron (NM_153588, intron 1 of 14)	14742.0	NM_153588	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-5062244-4	chr7	5061749	5062749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_133671, exon 1 of 12)	5' UTR (NM_133671, exon 1 of 12)	106.0	NM_001205231	22185.0	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	16.5	40.0	26.5	17.0	38.0	33.0
Merged-chr4-47333734-4	chr4	47333230	47334230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19492.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119436588-2	chr8	119436088	119437088	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027950)	promoter-TSS (NM_027950)	-574.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-142054657-2	chr4	142054157	142055157	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-29641.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65430815-4	chr18	65430291	65431291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172833)	promoter-TSS (NM_172833)	-206.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	95.5	245.5	129.5	70.0	215.5	141.5
Merged-chr5-112251486-4	chr5	112251026	112252026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312884, intron 1 of 4)	intron (NM_001312884, intron 1 of 4)	992.0	NM_001312884	12959.0	Mm.40324	NM_021351	ENSMUSG00000066975	Cryba4	-	crystallin, beta A4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101190944-4	chr15	101190443	101191443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007395, intron 1 of 8)	MIR3|SINE|MIR	-2926.0	NR_105927	102466774.0		NR_105927	ENSMUSG00000106563	Mir6962	mmu-mir-6962	microRNA 6962	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76657004-4	chr15	76656517	76657517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276321)	promoter-TSS (NM_001276321)	-116.0	NM_001276321	54151.0	Mm.247752	NM_019396	ENSMUSG00000053929	Cyhr1	1110031M01Rik|AU042374|Chrp	cysteine and histidine rich 1	protein-coding	21.5	54.0	27.0	14.5	53.5	20.0
Merged-chr17-28512422-2	chr17	28511922	28512922	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18439.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6366822-4	chr2	6366322	6367322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181399, intron 1 of 13)	intron (NM_181399, intron 1 of 13)	14086.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86225281-4	chr15	86224795	86225795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 1 of 12)	intron (NM_145476, intron 1 of 12)	10836.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50228192-2	chr11	50227692	50228692	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145926, intron 1 of 14)	intron (NM_145926, intron 1 of 14)	2857.0	NM_145926	103534.0	Mm.86759	NM_145926	ENSMUSG00000036620	Mgat4b	AA407995|GnTIVb	mannoside acetylglucosaminyltransferase 4, isoenzyme B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128297048-4	chr2	128296545	128297545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	132306.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108151882-4	chr3	108151412	108152412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001305461, exon 2 of 3)	5' UTR (NM_001305461, exon 2 of 3)	3020.0	NM_001305461	229714.0	Mm.73666	NM_175470	ENSMUSG00000046793	Gpr61	-	G protein-coupled receptor 61	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-100834999-4	chr10	100834498	100835498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93363.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127762647-4	chr3	127762139	127763139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027808, intron 1 of 13)	intron (NM_027808, intron 1 of 13)	17888.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	37.5	46.5	35.5	46.5	86.5	69.5
Merged-chr15-59049024-4	chr15	59048524	59049524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	33002.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136199094-4	chr5	136198607	136199607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025774)	promoter-TSS (NM_025774)	-153.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52929642-4	chr13	52929133	52930133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016709)	promoter-TSS (NM_016709)	44.0	NM_016709	11992.0	Mm.252034	NM_016709	ENSMUSG00000021460	Auh	C77140|W91705	AU RNA binding protein/enoyl-coenzyme A hydratase	protein-coding	55.0	21.0	66.5	30.5	33.5	25.5
Merged-chr11-60811211-4	chr11	60810687	60811687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009171)	promoter-TSS (NM_009171)	78.0	NM_009171	20425.0	Mm.364956	NM_009171	ENSMUSG00000020534	Shmt1	AI324848|AI385541|C81125|Shmt|mshmt|mshmt1|mshmt2	serine hydroxymethyltransferase 1 (soluble)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102405980-7	chr15	102405469	102406469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013672)	promoter-TSS (NM_013672)	-347.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153345674-4	chr2	153345189	153346189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039939)	promoter-TSS (NM_001039939)	121.0	NR_040318	72326.0	Mm.400102	NR_040318	ENSMUSG00000073236	2500004C02Rik	-	RIKEN cDNA 2500004C02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134458331-4	chr1	134457832	134458832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311136, intron 1 of 11)	intron (NM_001311136, intron 1 of 11)	2801.0	NM_001311136	240756.0	Mm.87398	NM_153128	ENSMUSG00000026455	Klhl12	C3ip1	kelch-like 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96274188-4	chr10	96273704	96274704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47997.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-73221766-4	chr6	73221271	73222271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164669)	promoter-TSS (NM_001164669)	-140.0	NM_001164669	330355.0	Mm.333166	NM_001164669	ENSMUSG00000052861	Dnah6	9830168K20|A730004I20Rik|Dnahc6|mKIAA1697|mdhc6	dynein, axonemal, heavy chain 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40684743-2	chr19	40684243	40685243	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	24973.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-25011146-4	chr16	25010647	25011647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48492.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31750683-2	chr16	31750183	31751183	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357281, intron 2 of 22)	intron (NM_001357281, intron 2 of 22)	-3667.0	NM_001252436	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-38635110-4	chr13	38634617	38635617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139063)	promoter-TSS (NM_139063)	-8.0	NM_139063	17828.0	Mm.261554	NM_139063	ENSMUSG00000038982	Bloc1s5	1810074A19Rik|Muted|mu	biogenesis of lysosomal organelles complex-1, subunit 5, muted	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38950520-4	chr6	38950008	38951008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 2 of 12)	intron (NM_011539, intron 2 of 12)	31522.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-103230449-4	chr9	103229930	103230930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133977)	promoter-TSS (NM_133977)	-144.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	89.0	81.5	126.0	48.5	83.5	156.0
Merged-chr7-24406376-2	chr7	24405876	24406876	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028047, intron 5 of 13)	PB1D11|SINE|Alu	6748.0	NM_028047	71997.0	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr4-132944922-4	chr4	132944386	132945386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MARNA|DNA|TcMar-Mariner	-22335.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	130.5	254.0	213.5	90.5	204.0	218.0
Merged-chr14-102810147-4	chr14	102809648	102810648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	172484.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61683069-2	chr14	61682569	61683569	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028264)	promoter-TSS (NR_028264)	-696.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78443237-4	chr9	78442741	78443741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173386)	promoter-TSS (NM_173386)	-4.0	NM_173386	214763.0	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-119372560-4	chr12	119372054	119373054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70856.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158146400-4	chr2	158145893	158146893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009373)	promoter-TSS (NM_009373)	-1.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27757242-2	chr2	27756742	27757742	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 8 of 9)	intron (NM_001290481, intron 8 of 9)	46659.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155235455-4	chr4	155234969	155235969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12934.0	NM_001357191	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	26.5	87.5	33.5	7.5	74.5	31.0
Merged-chr6-72152822-4	chr6	72152284	72153284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 6 of 6)	intron (NM_001035228, intron 6 of 6)	-29587.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44562810-4	chr19	44562348	44563348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176958)	promoter-TSS (NM_176958)	-6.0	NM_176958	319594.0	Mm.145278	NM_176958	ENSMUSG00000036450	Hif1an	2310046M24Rik|A830014H24Rik|FIH|FIH1	hypoxia-inducible factor 1, alpha subunit inhibitor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120613004-4	chr5	120612503	120613503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028041)	promoter-TSS (NM_028041)	-127.0	NM_028041	71990.0	Mm.24495	NM_028041	ENSMUSG00000029599	Ddx54	2410015A15Rik|AI414901|DP97	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	protein-coding	3.0	17.0	18.0	10.0	9.5	12.0
Merged-chr11-102246450-4	chr11	102245945	102246945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2437.0	NM_153544	217216.0	Mm.247335	NM_153544	ENSMUSG00000034773	BC030867	-	cDNA sequence BC030867	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35232241-4	chr17	35231727	35232727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010909, intron 2 of 3)	intron (NM_010909, intron 2 of 3)	-2783.0	NM_001347351	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	19.5	70.5	34.0	9.5	47.0	26.0
Merged-chr12-111164650-4	chr12	111164141	111165141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130987, intron 2 of 3)	intron (NR_130987, intron 2 of 3)	-1729.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94310795-2	chr16	94310295	94311295	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139145, intron 1 of 10)	MTD|LTR|ERVL-MaLR	2768.0	NM_139145	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47472546-4	chr14	47472035	47473035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030236)	promoter-TSS (NM_030236)	-26.0	NR_027414	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	11.0	23.0	10.0	6.0	5.5	3.0
Merged-chr2-83729540-4	chr2	83729044	83730044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008402, intron 1 of 29)	intron (NM_008402, intron 1 of 29)	5147.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	16.5	52.5	18.5	21.5	42.0	15.0
Merged-chr17-87985040-4	chr17	87984540	87985540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010830, exon 4 of 10)	exon (NM_010830, exon 4 of 10)	9990.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62261312-4	chr10	62260811	62261811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009314, exon 3 of 5)	exon (NM_009314, exon 3 of 5)	8873.0	NM_009314	21337.0	Mm.8054	NM_009314	ENSMUSG00000020081	Tacr2	Nk2r|Skr|Tac2r	tachykinin receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-112265623-4	chr2	112265126	112266126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133649)	promoter-TSS (NM_133649)	-688.0	NM_133649	107723.0	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97555468-4	chr11	97554961	97555961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 1 of 19)	intron (NM_018873, intron 1 of 19)	19665.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	4.5	19.5	17.5	7.0	19.5	9.0
Merged-chr4-124772348-3	chr4	124771847	124772847	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008385, intron 7 of 23)	L2a|LINE|L2	-20993.0	NR_151694	102634646.0	Mm.348378	NR_151694		Gm12915	-	predicted gene 12915	ncRNA	12.0	3.0	3.5	0.5	8.0	2.0
Merged-chr5-137076297-4	chr5	137075807	137076807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4035.0	NM_008871	18787.0	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24884051-4	chr7	24883615	24884615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360119)	promoter-TSS (NM_001360119)	-477.0	NM_001360128	20085.0	Mm.300281	NM_023133	ENSMUSG00000040952	Rps19	Dsk3	ribosomal protein S19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-54888696-4	chr1	54888158	54889158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	MLT1J|LTR|ERVL-MaLR	37729.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24462996-4	chr7	24462494	24463494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011113, intron 1 of 6)	intron (NM_011113, intron 1 of 6)	511.0	NM_011113	18793.0	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150749575-1	chr2	150749075	150750075	+	1000.0	f0_balb.idr	intron (NM_001355068, intron 1 of 13)	intron (NM_001355068, intron 1 of 13)	494.0	NM_172117	12497.0	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5793985-4	chr2	5793476	5794476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001356501)	TTS (NM_001356501)	-51058.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	12.5	55.0	56.0	43.0	89.5	88.0
Merged-chr7-142394439-4	chr7	142393912	142394912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6542.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	22.0	85.0	52.0	25.0	31.5	36.0
Merged-chr16-58513990-2	chr16	58513490	58514490	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 1 of 10)	intron (NM_001357433, intron 1 of 10)	9436.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119711003-4	chr11	119710510	119711510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028898, intron 3 of 33)	intron (NM_028898, intron 3 of 33)	108105.0	NM_028898	74370.0	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	5.5	12.5	2.5	2.5	2.5	4.5
Merged-chr2-160210725-4	chr2	160210236	160211236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116758.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109694079-4	chr8	109693593	109694593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028018)	promoter-TSS (NM_028018)	-799.0	NM_001361562	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35735455-3	chr7	35734952	35735952	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178704, intron 3 of 18)	intron (NM_178704, intron 3 of 18)	19002.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	13.5	16.5	25.0	112.5	235.5	185.5
Merged-chr1-162388727-4	chr1	162388228	162389228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038619, intron 2 of 20)	intron (NM_001038619, intron 2 of 20)	89306.0	NM_172646	103967.0	Mm.441620	NM_172646	ENSMUSG00000040265	Dnm3	9630020E24Rik|AW061159|B230343F03Rik|C530045C17|Dyna III|mKIAA0820	dynamin 3	protein-coding	20.5	21.0	14.0	9.0	46.5	16.5
Merged-chr3-65960168-2	chr3	65959668	65960668	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1919.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0.0	0.0	1.0	3.0	7.5	0.0
Merged-chr13-67553074-4	chr13	67552530	67553530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131100)	promoter-TSS (NR_131100)	122.0	NM_001035231	212276.0	Mm.422831	NM_183145	ENSMUSG00000095432	Zfp748	KRAB-O|Rslcan20/21|Zfp208|mszf54	zinc finger protein 748	protein-coding	41.5	107.5	66.0	49.0	82.0	78.5
Merged-chr4-9110538-4	chr4	9110024	9111024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-158769.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57249442-4	chr17	57248927	57249927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134125)	promoter-TSS (NM_134125)	-24.0	NM_001242391	106628.0	Mm.37368	NM_134125	ENSMUSG00000019487	Trip10	AI646975|Cip4	thyroid hormone receptor interactor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-121130238-4	chr6	121129734	121130734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270475, intron 1 of 31)	intron (NM_001270475, intron 1 of 31)	788.0	NM_001270475	194401.0	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	0.0	0.0	0.5	2.5	0.0	0.0
Merged-chr1-88250865-2	chr1	88250365	88251365	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 29 of 41)	ORR1C2|LTR|ERVL-MaLR	18543.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3130909-2	chr11	3130418	3131418	+	1000.0	f0_balb.idr|f1_balb.idr	TTS (NM_030207)	TTS (NM_030207)	6897.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118161869-2	chr11	118161369	118162369	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32650.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-41633894-1	chr7	41633394	41634394	+	1000.0	f0_c57.idr	promoter-TSS (NM_001360684)	promoter-TSS (NM_001360684)	363.0	NM_001360674	67607.0	Mm.384626	NM_023363	ENSMUSG00000074165	Zfp788	2810426N06Rik|AI256342|AI605193	zinc finger protein 788	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-93206483-4	chr5	93205998	93206998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017367)	promoter-TSS (NM_017367)	-3.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	37.5	68.5	77.5	26.5	54.5	52.0
Merged-chr7-121269502-4	chr7	121268992	121269992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122804.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167765355-4	chr2	167764858	167765858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74181.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-39845444-23	chr17	39844891	39845891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_046233, exon 1 of 1)	non-coding (NR_046233, exon 1 of 1)	2394.0	NR_046233	100861531.0		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36656154-4	chr16	36655648	36656648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	9929.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128393680-4	chr2	128393173	128394173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	35678.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-125213995-4	chr10	125213483	125214483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94833.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168207453-4	chr2	168206957	168207957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009628)	promoter-TSS (NM_009628)	-345.0	NM_001310088	11538.0	Mm.201322	NM_009628	ENSMUSG00000051149	Adnp	AA589558|mKIAA0784	activity-dependent neuroprotective protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-181016691-4	chr1	181016203	181017203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010145, intron 1 of 8)	intron (NM_010145, intron 1 of 8)	866.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-59120134-4	chr3	59119627	59120627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287119, intron 1 of 2)	intron (NM_001287119, intron 1 of 2)	10635.0	NM_001287124	140795.0	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	2.0	15.5	11.0	7.5	10.5	12.5
Merged-chr5-121660567-4	chr5	121660128	121661128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028227)	promoter-TSS (NM_028227)	65.0	NM_001289543	72399.0	Mm.153372	NM_028227	ENSMUSG00000029458	Brap	3010002G07Rik|BRAP2|IMP	BRCA1 associated protein	protein-coding	3.0	1.0	5.0	0.5	8.0	3.0
Merged-chr19-24989088-4	chr19	24988590	24989590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10439.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	52.0	147.0	88.5	28.5	93.5	81.0
Merged-chr4-44973615-4	chr4	44973121	44974121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7773.0	NM_080289	76238.0	Mm.196574	NM_080289	ENSMUSG00000035637	Grhpr	1110059D05Rik|6430629L09Rik|Glxr	glyoxylate reductase/hydroxypyruvate reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88390131-4	chr4	88389559	88390559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081184, intron 35 of 43)	intron (NM_001081184, intron 35 of 43)	48867.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	16.0	27.5	8.5	13.0	7.0	17.5
Merged-chr9-15301581-4	chr9	15301083	15302083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133732)	promoter-TSS (NM_133732)	24.0	NM_133732	70984.0	Mm.261842	NM_133732	ENSMUSG00000031938	4931406C07Rik	-	RIKEN cDNA 4931406C07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78579648-4	chr15	78579157	78580157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155437, intron 1 of 1)	intron (NR_155437, intron 1 of 1)	1932.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	4.0	11.5	8.5	10.5	19.5	21.0
Merged-chr13-98946746-4	chr13	98946263	98947263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-20379.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	16.5	98.0	48.5	16.5	99.5	49.5
Merged-chr12-44265982-4	chr12	44265469	44266469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-3185.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	16.5	43.5	22.5	13.5	11.0	7.5
Merged-chr1-87828501-4	chr1	87827975	87828975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009118, intron 10 of 15)	intron (NM_009118, intron 10 of 15)	24795.0	NM_009118	20215.0	Mm.1276	NM_009118	ENSMUSG00000056055	Sag	A930001K18Rik|Arr1|Irbp|arrestin	S-antigen, retina and pineal gland (arrestin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92675984-4	chr1	92675491	92676491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27150.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85710006-2	chr12	85709506	85710506	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_016767)	TTS (NM_016767)	23286.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19335847-4	chr7	19335353	19336353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-9218.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101310833-4	chr7	101310322	101311322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6264.0	NM_001360460	56018.0	Mm.28896	NM_019990	ENSMUSG00000030688	Stard10	AV048538|CGI-52|NY-C0-28|PC-TP2|PCTP2|Pctpl|Sdccag28|SdccagG28|TISP-81	START domain containing 10	protein-coding	43.5	121.0	69.0	58.0	96.5	96.5
Merged-chr15-102671911-4	chr15	102671431	102672431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026468)	promoter-TSS (NM_026468)	-65.0	NR_030460	751542.0		NR_030460	ENSMUSG00000076009	Mir688	Mirn688|mmu-mir-688	microRNA 688	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44603653-4	chr9	44603152	44604152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER89|LTR|ERV1	-1240.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	39.5	87.0	91.0	55.5	144.0	103.5
Merged-chr9-116366346-4	chr9	116365861	116366861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	177181.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78373031-7	chr10	78372496	78373496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21296.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79234269-4	chr3	79233763	79234763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045502, intron 1 of 2)	intron (NR_045502, intron 1 of 2)	21344.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	26.5	15.5	4.0	18.5	15.5	4.5
Merged-chr9-116100977-2	chr9	116100444	116101444	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 5 of 6)	(CA)n|Simple_repeat|Simple_repeat	74419.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	9.5	26.5	16.0	13.5	20.0	22.0
Merged-chr17-47757289-4	chr17	47756792	47757792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	19361.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98918407-4	chr11	98917908	98918908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025779, intron 9 of 11)	intron (NM_001025779, intron 9 of 11)	10257.0	NM_011799	23834.0	Mm.20912	NM_011799	ENSMUSG00000017499	Cdc6	CDC18L	cell division cycle 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6293486-4	chr19	6292982	6293982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	-12975.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108753517-2	chr9	108753017	108754017	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42477.0	NM_029634	76500.0	Mm.276336	NM_029634	ENSMUSG00000032599	Ip6k2	1500005N04Rik|AW050208|Ihpk2	inositol hexaphosphate kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120208771-4	chr10	120208264	120209264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026617)	promoter-TSS (NM_026617)	-62.0	NM_026617	68212.0	Mm.157426	NM_026617	ENSMUSG00000020225	Tmbim4	0610007H07Rik|AU022431	transmembrane BAX inhibitor motif containing 4	protein-coding	66.5	177.5	94.5	40.0	127.0	68.0
Merged-chr9-71952736-4	chr9	71952233	71953233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011544, intron 5 of 20)	MIRc|SINE|MIR	-56637.0	NM_001253863	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	1.5	4.0	6.5	1.5	0.5	3.5
Merged-chr12-79156995-4	chr12	79156482	79157482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009705)	TTS (NM_009705)	15476.0	NM_016800	53612.0	Mm.265929	NM_016800	ENSMUSG00000021124	Vti1b	AU015348|GES30|MVti1b|SNARE|Vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding	32.5	110.5	68.5	123.5	280.5	215.5
Merged-chr10-67025683-4	chr10	67025160	67026160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110511, intron 2 of 6)	MTD|LTR|ERVL-MaLR	20585.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87025538-4	chr11	87025042	87026042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31780.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-51478465-4	chr1	51477974	51478974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310549)	promoter-TSS (NM_001310549)	-75.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	32.5	112.5	89.5	31.5	114.0	89.5
Merged-chr15-83510896-4	chr15	83510369	83511369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178869)	promoter-TSS (NM_178869)	38.0	NM_178869	319953.0	Mm.235007	NM_178869	ENSMUSG00000022442	Ttll1	6330444E16Rik|AV014541	tubulin tyrosine ligase-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40128688-4	chr10	40128191	40129191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	13563.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-62761453-4	chr5	62760943	62761943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	4734.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-72262998-4	chr2	72262475	72263475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-22662.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-23787632-4	chr5	23787133	23788133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177323)	promoter-TSS (NM_177323)	-78.0	NM_177323	72772.0	Mm.133300	NM_177323	ENSMUSG00000028999	Rint1	1500019C06Rik|2810450M21Rik|Rint-1	RAD50 interactor 1	protein-coding	8.0	23.5	11.5	1.0	13.0	21.5
Merged-chr11-101316177-4	chr11	101315695	101316695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011192)	promoter-TSS (NM_011192)	-18.0	NM_011192	19192.0	Mm.288477	NM_011192	ENSMUSG00000078652	Psme3	AA410043|AU020960|Ki|PA28gamma|REGgamma|pa28g	proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165323399-2	chr2	165322899	165323899	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080287, intron 1 of 20)	intron (NM_080287, intron 1 of 20)	-2573.0	NM_001302752	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76402756-4	chr14	76402257	76403257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12204.0	NM_001310646	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91963055-2	chr2	91962555	91963555	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138306, intron 1 of 30)	intron (NM_138306, intron 1 of 30)	508.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-77058806-3	chr12	77058323	77059323	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96575.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91441405-4	chr6	91440898	91441898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045980)	promoter-TSS (NR_045980)	411.0	NR_038153	69798.0	Mm.229265	NR_038153	ENSMUSG00000100680	1810044D09Rik	-	RIKEN cDNA 1810044D09 gene	ncRNA	25.5	71.0	50.0	22.5	55.5	41.0
Merged-chr19-56749635-4	chr19	56749125	56750125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27253.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76363207-4	chr16	76362732	76363732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	9817.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-148322129-4	chr3	148321635	148322635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	632500.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	4.0	20.0	13.5	3.5	15.5	16.0
Merged-chr11-17005095-4	chr11	17004597	17005597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	RSINE1|SINE|B4	3621.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	97.5	134.0	104.5	97.5	132.5	107.5
Merged-chr16-35891174-2	chr16	35890674	35891674	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19792.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr16-11692227-2	chr16	11691727	11692727	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 18 of 20)	intron (NM_028964, intron 18 of 20)	-87475.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107576923-4	chr9	107576427	107577427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331161)	promoter-TSS (NM_001331161)	0.0	NM_008317	15586.0	Mm.475658	NM_008317	ENSMUSG00000010051	Hyal1	Hya1|Hyal-1	hyaluronoglucosaminidase 1	protein-coding	2.0	4.5	8.5	2.5	13.0	5.5
Merged-chr9-14275127-4	chr9	14274634	14275634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1167.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20693273-4	chr16	20692755	20693755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001304432)	TTS (NM_001304432)	-1802.0	NM_133778	78408.0	Mm.196512	NM_133778	ENSMUSG00000050821	Fam131a	2900046G09Rik	family with sequence similarity 131, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-151651207-4	chr5	151650723	151651723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027009)	promoter-TSS (NM_027009)	-15.0	NM_027009	69263.0	Mm.12553	NM_027009	ENSMUSG00000033970	Rfc3	2810416I22Rik|38kDa|AU022547|Recc3	replication factor C (activator 1) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63780726-4	chr9	63780209	63781209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22715.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3860857-3	chr12	3860343	3861343	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045884, intron 3 of 3)	intron (NR_045884, intron 3 of 3)	1401.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84981758-3	chr8	84981285	84982285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3037.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	100.5	383.5	225.5	127.5	363.5	239.0
Merged-chr4-125131485-7	chr4	125131020	125132020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3639.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70950134-4	chr14	70949651	70950651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	60044.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	56.0	108.0	101.0	39.5	107.5	89.5
Merged-chr10-78308084-2	chr10	78307584	78308584	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053014, intron 2 of 9)	intron (NM_053014, intron 2 of 9)	32123.0	NR_106119	102465765.0		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76845718-4	chr11	76845207	76846207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007754, intron 1 of 20)	intron (NM_007754, intron 1 of 20)	1301.0	NM_007754	12874.0	Mm.276736	NM_007754	ENSMUSG00000020841	Cpd	AA960140|AW322530|D830034L15Rik	carboxypeptidase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-13551339-4	chr14	13550825	13551825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163032, intron 2 of 4)	intron (NM_001163032, intron 2 of 4)	97367.0	NM_001163032	72003.0	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127184987-4	chr7	127184482	127185482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11095.0	NM_001285907	70233.0	Mm.28050	NM_027353	ENSMUSG00000042502	Cd2bp2	1500011B02Rik|2410024K20Rik|AW048183	CD2 antigen (cytoplasmic tail) binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145110279-2	chr7	145109792	145110792	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97827.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	58.5	79.0	46.5	32.5	79.0	70.5
Merged-chr10-41584697-4	chr10	41584189	41585189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 33 of 47)	MLT1L|LTR|ERVL-MaLR	16673.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114254489-8	chr7	114254011	114255011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033370, intron 1 of 21)	CpG	169.0	NM_033370	70349.0	Mm.277024	NM_033370	ENSMUSG00000030754	Copb1	2610019B04Rik	coatomer protein complex, subunit beta 1	protein-coding	2.0	34.5	18.0	11.0	27.0	21.5
Merged-chr2-166031229-4	chr2	166030728	166031728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	38591.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	21.0	55.0	42.5	20.5	61.5	35.0
Merged-chr1-36068784-2	chr1	36068284	36069284	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_015818, exon 1 of 2)	exon (NM_015818, exon 1 of 2)	384.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-102435231-2	chr10	102434731	102435731	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	55187.0	NM_024435	67405.0	Mm.64201	NM_024435	ENSMUSG00000019890	Nts	5033428E16Rik|NMN-125|NN|NT|NT/N|NTS1	neurotensin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72598495-4	chr6	72598000	72599000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026159)	promoter-TSS (NM_026159)	-87.0	NM_001253692	232089.0	Mm.167232	NM_144917	ENSMUSG00000056698	Elmod3	AI844780|C330008I15Rik|RBM29|Rbed1	ELMO/CED-12 domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53430433-4	chr11	53429954	53430954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025352, intron 1 of 1)	intron (NM_025352, intron 1 of 1)	377.0	NM_025352	22272.0	Mm.251621	NM_025352	ENSMUSG00000044894	Uqcrq	1100001F06Rik|1500040F11Rik|5830407L17Rik|9.5kDa|AA959903|QP-C|Qpc|Uqcrb|c1502	ubiquinol-cytochrome c reductase, complex III subunit VII	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103239502-4	chr15	103239013	103240013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002885)	promoter-TSS (NR_002885)	339.0	NM_001358950	12419.0	Mm.262059	NM_007626	ENSMUSG00000009575	Cbx5	2610029O15Rik|C75991|HP1|Hp1a|Hp1alpha	chromobox 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5572652-2	chr17	5572152	5573152	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	80052.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11455014-2	chr4	11454514	11455514	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-30944.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76505961-3	chr14	76505471	76506471	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310647, intron 2 of 2)	intron (NM_001310647, intron 2 of 2)	1461.0	NM_009366	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	22.5	13.0	13.5	32.0	36.5	58.0
Merged-chr16-22439812-4	chr16	22439312	22440312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023794)	promoter-TSS (NM_023794)	-242.0	NM_023794	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22060619-4	chr8	22060122	22061122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243161)	promoter-TSS (NM_001243161)	-99.0	NR_040650	207958.0	Mm.267439	NM_183142	ENSMUSG00000063362	Alg11	AI849156|AW492253|B230397C21|Mmat-4(5)	asparagine-linked glycosylation 11 (alpha-1,2-mannosyltransferase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166907126-4	chr2	166906630	166907630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023565, intron 1 of 24)	intron (NM_023565, intron 1 of 24)	1034.0	NM_023565	110750.0	Mm.22417	NM_023565	ENSMUSG00000002718	Cse1l	2610100P18Rik|AA407533|Capts|Cas|Xpo2	chromosome segregation 1-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83224391-4	chr11	83223881	83224881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015519, intron 2 of 3)	intron (NR_015519, intron 2 of 3)	805.0	NR_015519	100043636.0	Mm.295569	NR_015519	ENSMUSG00000087107	AI662270	AW496474	expressed sequence AI662270	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10952443-2	chr16	10951943	10952943	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37646.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-21029838-4	chr2	21029334	21030334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60960.0	NR_033225	433408.0	Mm.386941	NR_033225		Gm13375	-	predicted gene 13375	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60699705-4	chr11	60699206	60700206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159405)	promoter-TSS (NM_001159405)	16.0	NM_008502	16897.0	Mm.285453	NM_008502	ENSMUSG00000020536	Llgl1	AI325176|Lgl1|Llglh|Mgl1	LLGL1 scribble cell polarity complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136020819-4	chr4	136020306	136021306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013736, intron 1 of 10)	intron (NM_013736, intron 1 of 10)	843.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	44.5	95.5	71.0	46.5	116.0	91.5
Merged-chr2-131491906-4	chr2	131491414	131492414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177836)	promoter-TSS (NM_001177836)	52.0	NM_001177838	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35380340-4	chr17	35379923	35380923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001143689, exon 3 of 6)	exon (NM_001143689, exon 3 of 6)	806.0	NM_001143689	15015.0	Mm.464284	NM_001143689	ENSMUSG00000035929	H2-Q4	H-2Q4|H2-Gs10|Qa-4|Qa4|Qat-4|Qb-1|Qb1	histocompatibility 2, Q region locus 4	protein-coding	7.0	13.0	14.0	12.5	34.5	17.0
Merged-chr8-120436911-4	chr8	120436426	120437426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51940.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54998453-4	chr11	54997924	54998924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 13 of 24)	intron (NR_138556, intron 13 of 24)	35047.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8856628-4	chr17	8856126	8857126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347321, intron 1 of 21)	intron (NM_001347321, intron 1 of 21)	6641.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	13.5	4.5	16.5	2.5	3.5	11.0
Merged-chr6-97447193-4	chr6	97446683	97447683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	12103.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70038627-2	chr11	70038127	70039127	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007864, intron 8 of 19)	intron (NM_007864, intron 8 of 19)	-15497.0	NM_001291131	11889.0	Mm.6559	NM_009714	ENSMUSG00000020884	Asgr1	ASGPR1|Asgr|Asgr-1|HL-1	asialoglycoprotein receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-10351424-4	chr3	10350908	10351908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331015)	promoter-TSS (NM_001331015)	-91.0	NM_001331014	66361.0	Mm.371617	NM_025512	ENSMUSG00000039795	Zfand1	2310008M20Rik|AW048890	zinc finger, AN1-type domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59599058-4	chr15	59598559	59599559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 6 of 6)	intron (NM_026746, intron 6 of 6)	-49595.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	38.5	45.0	43.5	17.5	13.0	18.5
Merged-chr8-46791979-5	chr8	46791476	46792476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	52231.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-23432945-4	chr5	23432444	23433444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040469, exon 1 of 1)	non-coding (NR_040469, exon 1 of 1)	1409.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	82.5	281.0	173.5	89.0	322.5	168.5
Merged-chr5-115559878-4	chr5	115559328	115560328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007475, exon 2 of 7)	5' UTR (NM_007475, exon 2 of 7)	361.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	29.5	83.5	49.5	41.0	44.0	64.5
Merged-chr13-30545364-4	chr13	30544871	30545871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025710)	promoter-TSS (NM_025710)	-55.0	NM_025710	66694.0	Mm.181933	NM_025710	ENSMUSG00000038462	Uqcrfs1	4430402G14Rik|AI875505	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129035276-4	chr4	129034785	129035785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-22986.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156559906-2	chr1	156559406	156560406	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	1119.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	60.5	179.5	155.0	18.5	77.5	53.5
Merged-chr1-72243953-4	chr1	72243507	72244507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155355)	promoter-TSS (NR_155355)	14.0	NR_155355	320933.0	Mm.440953	NR_155355		D230017M19Rik	B930094L07Rik	RIKEN cDNA D230017M19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-103632665-4	chr8	103632165	103633165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045730, intron 1 of 4)	intron (NR_045730, intron 1 of 4)	28866.0	NR_045730	71058.0	Mm.67707	NR_045730	ENSMUSG00000110336	4933400L20Rik	-	RIKEN cDNA 4933400L20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43077773-4	chr17	43077259	43078259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 4 of 5)	intron (NM_178589, intron 4 of 5)	61204.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	6.5	56.5	37.5	31.0	119.0	88.0
Merged-chr12-79843304-2	chr12	79842804	79843804	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81429.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153071936-2	chr2	153071436	153072436	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145536, exon 5 of 9)	exon (NM_145536, exon 5 of 9)	5981.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	10.0	1.0	3.5	2.0	0.0	1.0
Merged-chr15-97964687-4	chr15	97964154	97965154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201359, intron 1 of 7)	intron (NM_201359, intron 1 of 7)	425.0	NM_001252153	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120279075-4	chr14	120278571	120279571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	3402.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-83828550-4	chr18	83828020	83829020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	258042.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108567984-4	chr9	108567466	108568466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029947)	promoter-TSS (NR_029947)	-353.0	NR_029577	387186.0		NR_029577	ENSMUSG00000105497	Mir191	Mirn191|mir-191|mmu-mir-191	microRNA 191	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21015361-4	chr9	21014888	21015888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010493)	promoter-TSS (NM_010493)	-552.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120369118-4	chr8	120368628	120369628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119738.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109123233-5	chr3	109122725	109123725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172685)	promoter-TSS (NM_172685)	76.0	NM_172685	229731.0	Mm.33574	NM_172685	ENSMUSG00000040322	Slc25a24	2610016M12Rik	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-192093081-4	chr1	192092601	192093601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011633)	promoter-TSS (NM_011633)	-502.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20198843-2	chr11	20198343	20199343	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-2569.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27473521-7	chr7	27473004	27474004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133210)	promoter-TSS (NM_133210)	-336.0	NM_133210	170742.0	Mm.200120	NM_133210	ENSMUSG00000055200	Sertad3	AW124805|D1Mgi51|Rbt1|Sei3	SERTA domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115516806-4	chr5	115516310	115517310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	10134.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	359.5	702.5	450.0	248.0	553.0	385.0
Merged-chr11-99024259-4	chr11	99023723	99024723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011623)	promoter-TSS (NM_011623)	-34.0	NM_011623	21973.0	Mm.4237	NM_011623	ENSMUSG00000020914	Top2a	Top-2	topoisomerase (DNA) II alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125518514-4	chr8	125518022	125519022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 2 of 21)	intron (NM_001357372, intron 2 of 21)	-25689.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	15.5	2.0	15.5	10.5	0.0	11.0
Merged-chr10-86881707-4	chr10	86881227	86882227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 44 of 68)	MTE2a|LTR|ERVL-MaLR	102722.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144368947-4	chr2	144368478	144369478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164813)	promoter-TSS (NM_001164813)	-5.0	NM_001164813	100048644.0	Mm.227925	NM_001164813	ENSMUSG00000098387	Pet117	Gm20571	PET117 homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118279711-4	chr7	118279225	118280225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35818.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	13.0	28.0	18.5	5.0	35.5	20.5
Merged-chr18-34409431-4	chr18	34408934	34409934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163004)	promoter-TSS (NM_001163004)	11.0	NM_016927	53871.0	Mm.445792	NM_016927	ENSMUSG00000014503	Pkd2l2	TRPP5	polycystic kidney disease 2-like 2	protein-coding	4.5	3.0	14.0	8.5	27.5	15.0
Merged-chr2-166730361-4	chr2	166729872	166730872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16540.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-116949704-4	chr13	116949212	116950212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	75804.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-8173151-4	chr14	8172673	8173673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024221)	promoter-TSS (NM_024221)	-181.0	NM_024221	68263.0	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87535216-7	chr6	87534713	87535713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1954.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	19.5	110.0	40.0	46.0	69.0	61.0
Merged-chr3-95994682-4	chr3	95994170	95995170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023320, intron 2 of 5)	intron (NM_023320, intron 2 of 5)	1169.0	NM_023320	67220.0	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	79.5	146.0	81.0	60.5	154.0	89.0
Merged-chr16-21595873-4	chr16	21595386	21596386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 44 of 46)	intron (NM_001081366, intron 44 of 46)	98779.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76504410-4	chr14	76503890	76504890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009366)	promoter-TSS (NM_009366)	-120.0	NM_009366	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	7.0	13.5	10.0	12.0	24.0	24.5
Merged-chr17-26514865-4	chr17	26514360	26515360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6388.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	9.0	1.5	9.5	0.5	0.5	0.0
Merged-chr4-131873473-4	chr4	131872938	131873938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020587)	promoter-TSS (NM_020587)	-201.0	NM_020587	57317.0	Mm.2478	NM_020587	ENSMUSG00000028911	Srsf4	5730499P16Rik|AW550192|MNCb-2616|SRp75|Sfrs4	serine/arginine-rich splicing factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-138519418-4	chr3	138518929	138519929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6762.0	NM_007917	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46489244-4	chr4	46488707	46489707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053179)	promoter-TSS (NM_053179)	-122.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3378789-4	chr19	3378281	3379281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 15 of 18)	intron (NM_013495, intron 15 of 18)	-10076.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75095813-2	chr8	75095313	75096313	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010442, intron 1 of 4)	intron (NM_010442, intron 1 of 4)	2195.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99251533-4	chr5	99251022	99252022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	1405.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65309093-4	chr5	65308568	65309568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011258, intron 4 of 24)	MTE2b|LTR|ERVL-MaLR	26571.0	NM_011258	19687.0	Mm.148877	NM_011258	ENSMUSG00000029191	Rfc1	140kDa|Alp145|RFC140|Recc1	replication factor C (activator 1) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51128972-4	chr14	51128472	51129472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030098)	promoter-TSS (NM_030098)	-65.0	NM_030098	78416.0	Mm.103835	NM_030098	ENSMUSG00000021880	Rnase6	9530043P15Rik|BB119466	ribonuclease, RNase A family, 6	protein-coding	17.5	22.0	36.5	22.0	19.0	25.5
Merged-chr7-80535127-4	chr7	80534567	80535567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007550)	promoter-TSS (NM_007550)	52.0	NM_001042527	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	74.5	127.5	114.5	76.0	159.0	127.0
Merged-chr6-56797032-4	chr6	56796542	56797542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001362209, exon 1 of 4)	5' UTR (NM_001362209, exon 1 of 4)	171.0	NM_001362211	210973.0	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122164494-4	chr2	122163995	122164995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080510, intron 1 of 6)	intron (NM_080510, intron 1 of 6)	3795.0	NM_080510	70928.0	Mm.379188	NM_080510	ENSMUSG00000033368	Trim69	4921519C19Rik|Rnf36|Trif|Trimless	tripartite motif-containing 69	protein-coding	213.5	442.5	343.5	145.0	372.0	274.0
Merged-chr7-141466246-4	chr7	141465749	141466749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001025103, exon 10 of 10)	3' UTR (NM_001025103, exon 10 of 10)	-1113.0	NM_009842	12476.0	Mm.30246	NM_009842	ENSMUSG00000025510	Cd151	PETA-3|SFA-1|Tspan24	CD151 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100353344-2	chr11	100352844	100353844	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359052, intron 6 of 12)	MIRc|SINE|MIR	2784.0	NM_001359052	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	1.5	1.5	0.0	0.0	0.0	1.0
Merged-chr17-59189751-4	chr17	59189260	59190260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-176438.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43557315-4	chr17	43556814	43557814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11137.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-174415770-4	chr2	174415263	174416263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020580)	promoter-TSS (NM_020580)	-41.0	NM_020580	57314.0	Mm.271709	NM_020580	ENSMUSG00000016253	Nelfcd	2410003I03Rik|C77797|Th1|Th1l	negative elongation factor complex member C/D, Th1l	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110230991-4	chr5	110230476	110231476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253814)	promoter-TSS (NM_001253814)	-28.0	NM_001253814	71782.0	Mm.288442	NM_027922	ENSMUSG00000029501	Ankle2	1110001J12Rik|AI661024|D5Ertd585e	ankyrin repeat and LEM domain containing 2	protein-coding	15.0	41.5	35.5	15.0	42.0	34.0
Merged-chr7-34230324-4	chr7	34229800	34230800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008155)	promoter-TSS (NM_008155)	36.0	NM_008155	14751.0	Mm.589	NM_008155	ENSMUSG00000036427	Gpi1	Amf|Gpi|Gpi-1|Gpi-1r|Gpi-1s|Gpi-1t|Gpi1-r|Gpi1-s|Gpi1-t|Gpi1s|MF|NK|NK/GPI|Nlk|Org|Pgi|Phi	glucose phosphate isomerase 1	protein-coding	4.5	6.5	6.0	3.0	8.0	0.5
Merged-chr8-27022562-4	chr8	27022055	27023055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1244.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92829498-2	chr16	92828998	92829998	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-3424.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21136104-4	chr9	21135596	21136596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4821.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118706335-4	chr14	118705825	118706825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033336)	promoter-TSS (NM_001033336)	-106.0	NM_001033336	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132747815-4	chr4	132747310	132748310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133888, intron 1 of 7)	intron (NM_133888, intron 1 of 7)	9361.0	NM_133888	100340.0	Mm.287187	NM_133888	ENSMUSG00000028885	Smpdl3b	1110054A24Rik|AU045240|Asml3b	sphingomyelin phosphodiesterase, acid-like 3B	protein-coding	98.5	402.0	164.5	92.0	359.5	184.5
Merged-chr11-86201264-4	chr11	86200760	86201760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_130958)	promoter-TSS (NR_130958)	-67.0	NM_178309	237911.0	Mm.186143	NM_178309	ENSMUSG00000034329	Brip1	3110009N10Rik|8030460J03Rik|Bach1|FACJ|Fancj|OF	BRCA1 interacting protein C-terminal helicase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-69403655-3	chr18	69403150	69404150	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	57490.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	17.0	15.0	16.5	44.0	40.0	23.0
Merged-chr17-65763721-3	chr17	65763218	65764218	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	B2_Mm1a|SINE|B2	9034.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	36.0	45.5	59.0	0.0	0.5	10.5
Merged-chr13-113623062-4	chr13	113622485	113623485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4421.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4300445-4	chr19	4299944	4300944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	5778.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137367926-4	chr4	137367433	137368433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10174.0	NM_001243769	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	16.0	26.5	23.0	14.5	23.0	22.5
Merged-chr17-79662045-4	chr17	79661548	79662548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201361, intron 5 of 10)	intron (NM_201361, intron 5 of 10)	47148.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84188054-4	chr17	84187559	84188559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001806)	promoter-TSS (NM_001001806)	-112.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146248904-4	chr5	146248412	146249412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153599, intron 1 of 12)	MMAR1|DNA|TcMar-Mariner	17662.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77984844-4	chr10	77984356	77985356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026431, exon 7 of 7)	3' UTR (NM_026431, exon 7 of 7)	6206.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-130523795-2	chr7	130523295	130524295	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3426.0	NM_001271343	11907.0	Mm.216321	NM_013799	ENSMUSG00000030850	Ate1	AI225793|AW547406	arginyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128107949-4	chr6	128107446	128108446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175414, intron 1 of 8)	intron (NM_175414, intron 1 of 8)	35632.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	5.0	11.0	6.0	1.5	4.0	3.5
Merged-chr17-27935251-4	chr17	27934747	27935747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	MTC|LTR|ERVL-MaLR	25941.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	23.0	88.5	53.5	19.5	71.0	77.0
Merged-chr11-60836674-4	chr11	60836173	60837173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172112, intron 1 of 6)	ORR1C1-int|LTR|ERVL-MaLR	6042.0	NM_145428	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-48410114-4	chr6	48409602	48410602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362145, intron 9 of 15)	intron (NM_001362145, intron 9 of 15)	14516.0	NM_001362144	77827.0	Mm.107646	NM_133922	ENSMUSG00000042810	Krba1	A930040G15Rik|AI448780	KRAB-A domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5692775-4	chr19	5692266	5693266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022012, intron 3 of 11)	intron (NM_022012, intron 3 of 11)	3635.0	NM_022012	26403.0	Mm.185026	NM_022012	ENSMUSG00000004054	Map3k11	2610017K16Rik|Mlk3|PTK1|SPRK	mitogen-activated protein kinase kinase kinase 11	protein-coding	11.5	27.5	34.0	6.5	45.5	31.5
Merged-chr12-79642078-4	chr12	79641575	79642575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	282658.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-55227141-4	chr3	55226730	55227730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15134.0	NM_019978	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-88360588-4	chr12	88360139	88361139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028105)	promoter-TSS (NM_028105)	125.0	NM_001361599	72113.0	Mm.181387	NM_028105	ENSMUSG00000021044	Adck1	2610005A10Rik	aarF domain containing kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102743734-4	chr12	102743230	102744230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324515)	promoter-TSS (NM_001324515)	11.0	NM_001324515	320351.0	Mm.86546	NM_177140	ENSMUSG00000046675	Tmem251	D230037D09Rik	transmembrane protein 251	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124541312-4	chr5	124540833	124541833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019770, intron 1 of 3)	CpG	542.0	NM_019770	56334.0	Mm.325307	NM_019770	ENSMUSG00000029390	Tmed2	1110032D12Rik|1810020N21Rik|Rnp24|Sid394|p24beta1	transmembrane p24 trafficking protein 2	protein-coding	13.0	51.5	21.5	10.0	59.0	27.0
Merged-chr3-130060840-4	chr3	130060346	130061346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207209)	promoter-TSS (NM_207209)	61.0	NM_207209	99683.0	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68239819-4	chr10	68239258	68240258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 3 of 9)	intron (NM_023598, intron 3 of 9)	38968.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	240.5	616.5	470.5	225.5	583.5	359.0
Merged-chr11-76027801-4	chr11	76027294	76028294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029658)	promoter-TSS (NM_029658)	-12.0	NM_029658	76566.0	Mm.34131	NM_029658	ENSMUSG00000020846	Rflnb	1500005K14Rik|Fam101b|RefilinB|cfm	refilin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98656738-4	chr7	98656239	98657239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172280)	promoter-TSS (NM_172280)	-170.0	NM_172280	233545.0	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124021339-4	chr8	124020823	124021823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133966)	promoter-TSS (NM_133966)	74.0	NM_133966	102162.0	Mm.291777	NM_133966	ENSMUSG00000038697	Taf5l	1110005N04Rik|AI849020	TATA-box binding protein associated factor 5 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-149956320-2	chr1	149955820	149956820	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	4970.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-123244406-4	chr6	123243880	123244880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190321, intron 3 of 4)	intron (NM_001190321, intron 3 of 4)	14537.0	NM_001190321	56620.0	Mm.271782	NM_020001	ENSMUSG00000023349	Clec4n	Clec6a|Clecsf10|Nkcl	C-type lectin domain family 4, member n	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127481450-4	chr10	127480962	127481962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359246, intron 13 of 23)	intron (NM_001359246, intron 13 of 23)	-20224.0	NM_001359751	237611.0	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	31.5	95.0	67.5	39.0	83.5	60.5
Merged-chr8-20424831-4	chr8	20424328	20425328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028428)	promoter-TSS (NR_028428)	-14.0	NR_028428	381598.0	Mm.359054	NM_001024708	ENSMUSG00000071793	2610005L07Rik	2810038F24Rik|6720476A01Rik	cadherin 11 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79819851-2	chr10	79819351	79820351	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001161747, exon 8 of 8)	3' UTR (NM_001161747, exon 8 of 8)	-1170.0	NM_030218	78906.0	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117899603-4	chr10	117899122	117900122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25837.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	109.0	278.0	207.0	122.0	163.0	122.5
Merged-chr18-23873366-4	chr18	23872872	23873872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	69402.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115814255-4	chr6	115813727	115814727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110506, intron 7 of 8)	intron (NM_001110506, intron 7 of 8)	-5484.0	NM_172086	19951.0	Mm.104368	NM_172086	ENSMUSG00000057841	Rpl32	AU020185|rpL32-3A	ribosomal protein L32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61131047-2	chr18	61130547	61131547	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178277)	TTS (NM_178277)	13579.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	4.5	6.0	1.0	2.0	6.0	1.5
Merged-chr5-123398040-4	chr5	123397520	123398520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133917, intron 1 of 16)	intron (NM_133917, intron 1 of 16)	3222.0	NM_177582	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135720089-4	chr3	135719599	135720599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28552.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92867887-4	chr16	92867371	92868371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-41797.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-3908687-4	chr16	3908184	3909184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029738)	promoter-TSS (NM_029738)	5.0	NM_028484	73261.0	Mm.486226	NM_028484	ENSMUSG00000005983	1700037C18Rik	2810022L20Rik	RIKEN cDNA 1700037C18 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108881132-4	chr3	108880632	108881632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177091, intron 4 of 12)	intron (NM_177091, intron 4 of 12)	8876.0	NM_177091	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122145946-4	chr2	122145464	122146464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026251, intron 2 of 17)	intron (NM_026251, intron 2 of 17)	-1723.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	121.5	320.0	195.5	135.5	295.5	209.0
Merged-chr7-79780945-7	chr7	79780433	79781433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037927, intron 17 of 17)	intron (NM_001037927, intron 17 of 17)	12657.0	NM_008588	17292.0	Mm.1404	NM_008588	ENSMUSG00000030544	Mesp1	bHLHc5	mesoderm posterior 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-13008215-2	chr17	13007715	13008715	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013671, exon 2 of 5)	exon (NM_013671, exon 2 of 5)	376.0	NM_013671	20656.0	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-16238162-4	chr9	16237659	16238659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	Lx10|LINE|L1	140072.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-23035393-2	chr2	23034893	23035893	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	intron (NM_001077190, intron 1 of 10)	4848.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51854921-2	chr13	51854421	51855421	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8246.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66138825-4	chr5	66138337	66139337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	12141.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	69.5	141.0	145.0	44.5	88.0	76.5
Merged-chr10-14531245-4	chr10	14530722	14531722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002268, intron 2 of 24)	intron (NM_001002268, intron 2 of 24)	13814.0	NM_001002268	215798.0	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61475715-4	chr10	61475216	61476216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153542)	promoter-TSS (NM_153542)	-117.0	NM_153542	216011.0	Mm.136116	NM_153542	ENSMUSG00000037151	Lrrc20	BC036304	leucine rich repeat containing 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-63131494-4	chr11	63130978	63131978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008885)	promoter-TSS (NM_008885)	21.0	NM_001302255	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67306999-4	chr5	67306511	67307511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310629)	promoter-TSS (NM_001310629)	56.0	NM_001310629	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	82.5	137.5	126.0	83.5	217.0	95.0
Merged-chr13-55513470-4	chr13	55512971	55513971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026131)	promoter-TSS (NM_026131)	-25.0	NM_001114088	67399.0	Mm.275648	NM_026131	ENSMUSG00000021493	Pdlim7	LMP	PDZ and LIM domain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60806704-4	chr18	60806203	60807203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042605, intron 1 of 8)	intron (NM_001042605, intron 1 of 8)	2854.0	NM_010545	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	194.0	667.0	523.5	241.5	554.0	427.0
Merged-chr11-100343224-4	chr11	100342682	100343682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	8775.0	NM_010257	14459.0	Mm.4767	NM_010257	ENSMUSG00000017165	Gast	GAS	gastrin	protein-coding	2.0	17.5	12.5	5.0	27.0	13.0
Merged-chr14-121648797-2	chr14	121648297	121649297	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081039, intron 9 of 53)	intron (NM_001081039, intron 9 of 53)	49620.0	NM_001347596	105445.0	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	9.0	11.0	2.5	9.0	1.5	3.0
Merged-chr14-32932372-4	chr14	32931876	32932876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178791, intron 7 of 7)	intron (NM_178791, intron 7 of 7)	-59006.0	NM_001146021	67580.0	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131084065-1	chr1	131083565	131084565	+	1000.0	f1_balb.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	13778.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	35.0	66.0	44.5	31.0	76.0	52.5
Merged-chr7-96976208-4	chr7	96975713	96976713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153591, intron 5 of 13)	ORR1D2|LTR|ERVL-MaLR	24686.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	4.5	1.0	7.0	4.5	1.0	7.5
Merged-chr4-101354615-4	chr4	101354115	101355115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040640, intron 1 of 3)	intron (NR_040640, intron 1 of 3)	832.0	NR_040640	68400.0	Mm.272098	NR_040640	ENSMUSG00000087361	0610043K17Rik	-	RIKEN cDNA 0610043K17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-17842259-4	chr5	17841754	17842754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	-6358.0	NM_007643	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-63811976-4	chr5	63811486	63812486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029554)	promoter-TSS (NM_029554)	-509.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	0.5	1.0	2.0	0.5	1.0	2.0
Merged-chr15-101318318-4	chr15	101317801	101318801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25089.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-66518439-2	chr18	66517939	66518939	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	14261.0	NR_040528	100503565.0	Mm.98256	NR_040528		Gm9926	-	predicted gene 9926	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73491721-4	chr2	73491239	73492239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-5986.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45959818-4	chr9	45959330	45960330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4581.0	NM_172257	214597.0	Mm.379345	NM_172257	ENSMUSG00000034908	Sidt2	B930096O19|BC023957|CGI-40	SID1 transmembrane family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-106760194-4	chr7	106759709	106760709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6823.0	NM_146602	258595.0	Mm.377585	NM_146602	ENSMUSG00000059087	Olfr698	MOR283-3	olfactory receptor 698	protein-coding	0.0	1.0	6.5	0.0	4.0	1.5
Merged-chr3-51195920-2	chr3	51195420	51196420	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B5_MM|LTR|ERVK	-28527.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94917613-4	chr8	94917098	94918098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033533, intron 1 of 8)	CpG	500.0	NM_001033533	234582.0	Mm.277871	NM_001033533	ENSMUSG00000063605	Ccdc102a	BC027663|Gm586	coiled-coil domain containing 102A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-148534612-4	chr6	148534155	148535155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79654.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106613221-4	chr11	106612707	106613707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198292)	promoter-TSS (NM_198292)	-277.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7871871-4	chr9	7871371	7872371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007464, intron 1 of 8)	intron (NM_007464, intron 1 of 8)	1299.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-143702426-2	chr1	143701926	143702926	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145991, intron 1 of 16)	intron (NM_145991, intron 1 of 16)	467.0	NM_145991	214498.0	Mm.156727	NM_145991	ENSMUSG00000026361	Cdc73	8430414L16Rik|C130030P16Rik|C81219|Hrpt2	cell division cycle 73, Paf1/RNA polymerase II complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122577627-4	chr3	122577136	122578136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114665, intron 2 of 15)	Lx8b|LINE|L1	-35955.0	NR_106117	102465764.0		NR_106117	ENSMUSG00000104773	Mir7657	mmu-mir-7657	microRNA 7657	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93445588-4	chr1	93445079	93446079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133808, intron 1 of 27)	CpG	122.0	NM_001301364	110611.0	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8868088-4	chr17	8867580	8868580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347321, intron 1 of 21)	intron (NM_001347321, intron 1 of 21)	18095.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-82257907-2	chr12	82257407	82258407	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 2 of 23)	intron (NM_001167983, intron 2 of 23)	-53442.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88733332-4	chr15	88732834	88733834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033274, intron 1 of 12)	intron (NM_001033274, intron 1 of 12)	885.0	NM_001033274	223770.0	Mm.254438	NM_001033274	ENSMUSG00000022387	Brd1	1110059H06Rik|AI316859|mKIAA4191	bromodomain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113772734-4	chr5	113772244	113773244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016926)	promoter-TSS (NM_016926)	-68.0	NM_025526	66383.0	Mm.29497	NM_025526	ENSMUSG00000025825	Iscu	2310020H20Rik|AA407971|Nifu|Nifun	iron-sulfur cluster assembly enzyme	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31350128-4	chr15	31349635	31350635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027496, intron 1 of 3)	intron (NM_027496, intron 1 of 3)	17624.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-50087931-4	chr18	50087428	50088428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134131, intron 1 of 1)	intron (NM_134131, intron 1 of 1)	-34266.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	9.5	28.5	20.0	20.5	21.0	14.0
Merged-chr6-140624794-4	chr6	140624287	140625287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001309437)	promoter-TSS (NM_001309437)	-122.0	NM_001309437	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117134039-4	chr4	117133537	117134537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013807)	promoter-TSS (NM_013807)	-74.0	NM_001313916	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	3.5	30.5	28.0	5.5	26.0	25.0
Merged-chr14-55098197-4	chr14	55097686	55098686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001303502)	TTS (NM_001303502)	3402.0	NM_153083	105663.0	Mm.319204	NM_153083	ENSMUSG00000045691	Thtpa	AW122966	thiamine triphosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105346203-2	chr8	105345703	105346703	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	1767.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-68709468-4	chr3	68708959	68709959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18035.0	NM_008351	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34771393-4	chr11	34770885	34771885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 1 of 51)	intron (NM_033374, intron 1 of 51)	12520.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49173253-4	chr13	49172767	49173767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-14280.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-47043390-4	chr13	47042864	47043864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172262)	promoter-TSS (NM_172262)	-135.0	NM_172262	218214.0	Mm.31259	NM_172262	ENSMUSG00000038080	Kdm1b	4632428N09Rik|AI482520|Aof1	lysine (K)-specific demethylase 1B	protein-coding	14.5	66.0	27.5	15.0	37.0	34.0
Merged-chr8-23035456-4	chr8	23034971	23035971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277284, intron 1 of 42)	intron (NM_001277284, intron 1 of 42)	372.0	NM_001277284	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	19.5	17.0	10.5	19.5	6.0	4.5
Merged-chr11-115078526-4	chr11	115078053	115079053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-12878.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55469454-4	chr11	55468982	55469982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013716)	promoter-TSS (NM_013716)	-270.0	NM_013716	27041.0	Mm.39631	NM_013716	ENSMUSG00000018583	G3bp1	AI849976|B430204O07|C87777|G3bp|mKIAA4115	GTPase activating protein (SH3 domain) binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95514994-4	chr10	95514497	95515497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080560)	promoter-TSS (NM_080560)	-165.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87838907-4	chr6	87838415	87839415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133934)	promoter-TSS (NM_133934)	-156.0	NM_133934	57905.0	Mm.241546	NM_133934	ENSMUSG00000030056	Isy1	5830446M03Rik|AI181014|AU020769	ISY1 splicing factor homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45182388-4	chr7	45181870	45182870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_053256)	TTS (NM_053256)	1375.0	NM_053256	114640.0	Mm.207078	NM_053256	ENSMUSG00000038300	Pth2	Tifp39|Tip39	parathyroid hormone 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96371123-4	chr10	96370624	96371624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	144917.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60821863-4	chr2	60821369	60822369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	59569.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-185224854-4	chr1	185224359	185225359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163754, intron 2 of 34)	MT2A|LTR|ERVL	-18067.0	NR_034044	100217449.0	Mm.429560	NR_034044	ENSMUSG00000077571	Snora36b	MBI-87	small nucleolar RNA, H/ACA box 36B	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-90029570-3	chr11	90029052	90030052	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026433)	promoter-TSS (NM_026433)	-796.0	NM_026433	67888.0	Mm.212428	NM_026433	ENSMUSG00000069763	Tmem100	1810057C19Rik|AV011897	transmembrane protein 100	protein-coding	2.0	22.5	7.5	6.5	13.5	0.5
Merged-chr12-3344411-4	chr12	3343917	3344917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20715.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-47011158-4	chr4	47010650	47011650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19436.0	NM_001081141	242425.0	Mm.101909	NM_001081141	ENSMUSG00000039809	Gabbr2	GABABR2|Gb2|Gm425|Gpr51	gamma-aminobutyric acid (GABA) B receptor, 2	protein-coding	13.5	29.5	21.0	20.5	47.5	34.5
Merged-chr8-123373743-4	chr8	123373253	123374253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037877)	promoter-TSS (NM_001037877)	42.0	NM_001286363	66855.0	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98815330-4	chr7	98814810	98815810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-19802.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62894673-4	chr9	62894186	62895186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 9 of 13)	intron (NM_019663, intron 9 of 13)	-32662.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49929534-4	chr16	49929021	49930021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	-26309.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12012432-4	chr19	12011953	12012953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24287.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-29569086-4	chr5	29568581	29569581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133907)	promoter-TSS (NM_133907)	-161.0	NM_133907	100763.0	Mm.137746	NM_133907	ENSMUSG00000039000	Ube3c	AI853514|mKIAA0010	ubiquitin protein ligase E3C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120038677-1	chr11	120038177	120039177	+	1000.0	f1_c57bl6.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	3104.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	11.0	23.5	3.0	8.5	14.5	6.0
Merged-chr5-148542399-4	chr5	148541909	148542909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	9264.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	21.0	46.5	41.5	21.0	28.0	28.0
Merged-chr4-152011215-2	chr4	152010715	152011715	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033352, intron 1 of 3)	intron (NM_001033352, intron 1 of 3)	2324.0	NM_001033352	242785.0	Mm.22306	NM_001033352	ENSMUSG00000073700	Klhl21	1810045K06Rik|D330008A20|mKIAA0469	kelch-like 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-29945454-4	chr16	29944825	29945825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33799.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67339793-4	chr17	67339270	67340270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	14689.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98937032-4	chr15	98936579	98937579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2689.0	NM_011654	22143.0	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-10860823-2	chr11	10860323	10861323	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-253193.0	NM_177033	319922.0	Mm.337851	NM_177033	ENSMUSG00000050830	Vwc2	A930041G11Rik|G11|PSST739|UNQ739|cradin	von Willebrand factor C domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-19418182-4	chr14	19417688	19418688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	184399.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81859610-3	chr15	81859087	81860087	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-1261.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	21.0	99.0	80.5	43.5	73.0	48.0
Merged-chr5-105627295-4	chr5	105626807	105627807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72662.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31069718-4	chr2	31069243	31070243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	MTB_Mm|LTR|ERVL-MaLR	26757.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20548570-4	chr16	20548078	20549078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030670)	promoter-TSS (NR_030670)	-22.0	NR_030670	100042948.0	Mm.406754	NR_030670		Gm15760	-	mitochondrial ribosomal protein S18B pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44470574-4	chr11	44470058	44471058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024475)	promoter-TSS (NM_024475)	-10.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	108.5	267.5	192.0	91.5	247.5	157.5
Merged-chr14-60515403-2	chr14	60514903	60515903	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie1|DNA|hAT-Charlie	-119302.0	NM_001033272	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	0.5	0.0	3.0	0.5	0.0	3.0
Merged-chr4-148655164-4	chr4	148654678	148655678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085505, intron 3 of 10)	intron (NM_001085505, intron 3 of 10)	11861.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	16.0	55.0	46.0	15.5	36.5	2.5
Merged-chr9-58267116-2	chr9	58266616	58267616	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13952.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-159784881-4	chr2	159784414	159785414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-162427.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	11.5	19.0	9.5	0.0	8.0	8.0
Merged-chr4-6444029-4	chr4	6443510	6444510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 1 of 30)	intron (NM_010945, intron 1 of 30)	10261.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40845123-4	chr4	40844623	40845623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	5015.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167690674-4	chr2	167690166	167691166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110334)	promoter-TSS (NR_110334)	-93.0	NR_110334	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-34723272-4	chr12	34722764	34723764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	193831.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	43.0	88.5	52.0	37.0	66.0	54.5
Merged-chr15-54929626-4	chr15	54929090	54930090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9444.0	NM_001285994	18606.0	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5522146-4	chr11	5521607	5522607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013842, intron 2 of 4)	intron (NM_013842, intron 2 of 4)	1466.0	NM_001271730	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	39.0	124.0	108.5	43.0	159.5	87.0
Merged-chr2-30171632-4	chr2	30171192	30172192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007931, exon 1 of 3)	exon (NM_007931, exon 1 of 3)	168.0	NM_007931	13804.0	Mm.474473	NM_007931	ENSMUSG00000015337	Endog	-	endonuclease G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25588773-4	chr2	25588263	25589263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024616, intron 7 of 14)	intron (NM_001024616, intron 7 of 14)	-8664.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-38021457-1	chr19	38020957	38021957	+	1000.0	f0_balb.idr	intron (NM_001302140, intron 3 of 53)	intron (NM_001302140, intron 3 of 53)	22120.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	19.0	32.0	29.0	12.0	83.0	46.5
Merged-chr7-45471645-2	chr7	45471145	45472145	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4747.0	NM_007527	12028.0	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-58393232-4	chr10	58392736	58393736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201242, intron 1 of 9)	intron (NM_201242, intron 1 of 9)	-1137.0	NM_001193303	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	4.0	9.5	6.0	1.5	12.0	16.0
Merged-chr2-84655982-4	chr2	84655487	84656487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355064, intron 1 of 18)	B1_Mur2|SINE|Alu	2990.0	NM_001355064	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	66.0	48.0	47.5	58.0	47.0	41.0
Merged-chr11-3452375-4	chr11	3451866	3452866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028317)	promoter-TSS (NR_028317)	-71.0	NR_028317	71523.0	Mm.72795	NM_027820	ENSMUSG00000034587	8430429K09Rik	-	RIKEN cDNA 8430429K09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-42352864-2	chr6	42352364	42353364	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289618, intron 4 of 9)	intron (NM_001289618, intron 4 of 9)	3036.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-12923193-4	chr10	12922693	12923693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038027)	promoter-TSS (NR_038027)	-66.0	NR_038028	320273.0	Mm.417706	NR_038027	ENSMUSG00000097378	B230208H11Rik	-	RIKEN cDNA B230208H11 gene	ncRNA	41.5	66.0	62.5	22.0	51.5	55.0
Merged-chr14-103070212-4	chr14	103069736	103070736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033242)	promoter-TSS (NM_001033242)	20.0	NM_001033242	211286.0	Mm.295289	NM_001033242	ENSMUSG00000022125	Cln5	A730075N08Rik	ceroid-lipofuscinosis, neuronal 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-97319788-4	chr1	97319303	97320303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-191500.0	NM_028942	74441.0	Mm.60362	NM_028942	ENSMUSG00000026331	Slco6c1	4933404A18Rik|C79179	solute carrier organic anion transporter family, member 6c1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95994010-4	chr3	95993509	95994509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023320, intron 2 of 5)	intron (NM_023320, intron 2 of 5)	1830.0	NM_023320	67220.0	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	58.5	91.5	46.0	23.0	69.5	47.0
Merged-chr3-126695538-4	chr3	126695039	126696039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 3 of 18)	intron (NM_001025438, intron 3 of 18)	98588.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	18.5	34.0	14.0	28.5	21.5	14.5
Merged-chr2-164681686-4	chr2	164681184	164682184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-3423.0	NM_001012704	408190.0	Mm.376205	NM_001012704	ENSMUSG00000067704	Wfdc13	Wfdc13l1	WAP four-disulfide core domain 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95929779-4	chr16	95929318	95930318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040484)	promoter-TSS (NR_040484)	-741.0	NR_040484	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-48532903-4	chr9	48532389	48533389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	37546.0	NM_001004191	434402.0	Mm.386950	NM_001004191	ENSMUSG00000042293	Gm5617	EG434402	predicted gene 5617	protein-coding	43.0	54.5	32.5	36.0	21.0	38.5
Merged-chr18-84682038-4	chr18	84681538	84682538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289531)	promoter-TSS (NM_001289531)	21.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93268524-4	chr10	93268035	93269035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001322265, intron 2 of 4)	L1MB3|LINE|L1	42624.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	17.5	16.0	14.0	16.5	27.5	23.0
Merged-chr5-117417619-4	chr5	117417127	117418127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	3625.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76053751-4	chr16	76053232	76054232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52948.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-141084929-4	chr5	141084410	141085410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84314.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	5.5	33.0	22.5	18.5	28.0	18.0
Merged-chr5-103678333-4	chr5	103677821	103678821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22589.0	NM_001163550	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20651671-4	chr16	20651187	20652187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027485)	promoter-TSS (NR_027485)	35.0	NM_134101	21762.0	Mm.243234	NM_134101	ENSMUSG00000006998	Psmd2	9430095H01Rik|AA407121|TEG-190|Tex190	proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34255414-4	chr13	34254917	34255917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	89765.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138283014-4	chr4	138282524	138283524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190978, intron 6 of 11)	intron (NM_001190978, intron 6 of 11)	20773.0	NM_010623	16559.0	Mm.271936	NM_010623	ENSMUSG00000028758	Kif17	5930435E01Rik|AW492270|Kif17b|mKIAA1405	kinesin family member 17	protein-coding	0.0	0.0	0.0	0.0	5.0	4.0
Merged-chr5-123863208-4	chr5	123862690	123863690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030701)	TTS (NM_030701)	2326.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	44.5	113.0	55.0	38.0	107.0	60.5
Merged-chr1-60409571-4	chr1	60409074	60410074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198571)	promoter-TSS (NM_001198571)	-45.0	NM_001198571	329165.0	Mm.212066	NM_198127	ENSMUSG00000026782	Abi2	8430425M24Rik|AI839867|C130078H13	abl-interactor 2	protein-coding	0.5	10.0	4.0	0.0	4.0	2.0
Merged-chr11-19924348-4	chr11	19923842	19924842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033523)	promoter-TSS (NM_033523)	-100.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	80.5	135.5	107.0	78.0	148.0	113.5
Merged-chr11-73138336-4	chr11	73137846	73138846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010353)	promoter-TSS (NM_010353)	-52.0	NM_010353	14841.0	Mm.42045	NM_010353	ENSMUSG00000050107	Haspin	Gsg2	histone H3 associated protein kinase	protein-coding	7.0	12.0	16.5	7.5	9.0	12.0
Merged-chr5-72204733-4	chr5	72204248	72205248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 1 of 22)	intron (NR_003966, intron 1 of 22)	1405.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136659456-4	chr6	136658954	136659954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025806, intron 1 of 10)	intron (NM_025806, intron 1 of 10)	2439.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	89.0	214.5	203.0	60.0	223.5	130.0
Merged-chr13-67360599-4	chr13	67360113	67361113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001038651)	promoter-TSS (NM_001038651)	-41.0	NM_001038651	629016.0	Mm.440800	NM_001038651	ENSMUSG00000098905	Zfp953	E130120F12Rik	zinc finger protein 953	protein-coding	74.0	222.0	138.5	64.0	216.0	152.5
Merged-chr18-44757895-4	chr18	44757403	44758403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085373, intron 2 of 18)	MTD|LTR|ERVL-MaLR	54279.0	NM_001085373	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	3.5	17.5	5.0	7.0	12.5	5.5
Merged-chr3-121603009-4	chr3	121602512	121603512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	40473.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110333302-4	chr9	110332803	110333803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001103162)	promoter-TSS (NM_001103162)	15.0	NM_001103162	235623.0	Mm.288741	NM_001001144	ENSMUSG00000032485	Scap	9530044G19|mKIAA0199	SREBF chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63123831-4	chr14	63123313	63124313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	1351.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3931922-4	chr19	3931402	3932402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2186.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-45907561-1	chr1	45907061	45908061	+	1000.0	f0_balb.idr	TTS (NM_016917)	TTS (NM_016917)	18033.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87394049-4	chr6	87393559	87394559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-5124.0	NM_026860	68888.0	Mm.46387	NM_026860	ENSMUSG00000030048	Gkn3	1190003M12Rik	gastrokine 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-41943253-1	chr3	41942753	41943753	+	1000.0	f0_balb.idr	Intergenic	L2a|LINE|L2	200635.0	NM_027271	73852.0	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	2.0	1.5	6.5	6.0	0.0	3.5
Merged-chr6-71438228-4	chr6	71437705	71438705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355745, intron 1 of 9)	intron (NM_001355745, intron 1 of 9)	2432.0	NM_001355745	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28358486-2	chr7	28357986	28358986	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6946.0	NR_028129	100302567.0		NR_028129		AF357399	MBI-142	snoRNA AF357399	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27673273-2	chr7	27672773	27673773	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290528, intron 1 of 9)	intron (NM_001290528, intron 1 of 9)	1308.0	NM_001290528	269881.0	Mm.389883	NM_001081292	ENSMUSG00000040390	Map3k10	BC028668|BC046514|MST|Mlk2	mitogen-activated protein kinase kinase kinase 10	protein-coding	0.0	0.0	0.0	0.0	2.0	0.5
Merged-chr9-59291522-4	chr9	59291022	59292022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028121)	promoter-TSS (NM_028121)	-50.0	NM_001359282	72141.0	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102380326-4	chr12	102379833	102380833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 7 of 9)	intron (NM_177620, intron 7 of 9)	59480.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	2.0	9.0	11.5	5.5	16.5	12.5
Merged-chr10-128058947-4	chr10	128058472	128059472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019766)	promoter-TSS (NM_019766)	-10.0	NM_019766	56351.0	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3	protein-coding	48.5	143.0	113.5	119.0	144.0	141.5
Merged-chr3-108044913-4	chr3	108044399	108045399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026764)	promoter-TSS (NM_026764)	-40.0	NM_001160411	14865.0	Mm.31203	NM_026764	ENSMUSG00000027890	Gstm4	1110004G14Rik|GSTM7-7|Gstb-4|Gstb4	glutathione S-transferase, mu 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-109054880-4	chr9	109054372	109055372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026381)	promoter-TSS (NM_026381)	6.0	NM_026381	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86586452-4	chr11	86585949	86586949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 11 of 11)	intron (NM_001356531, intron 11 of 11)	-2291.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27381595-4	chr14	27381083	27382083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 4 of 10)	URR1A|DNA|hAT-Charlie	20194.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	5.5	14.5	25.0	17.0	28.5	22.5
Merged-chr17-47010548-4	chr17	47010065	47011065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177374)	promoter-TSS (NM_001177374)	-33.0	NM_001177374	224826.0	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-126876269-4	chr2	126875753	126876753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021450)	promoter-TSS (NM_021450)	8.0	NM_001164325	58800.0	Mm.244705	NM_021450	ENSMUSG00000027365	Trpm7	2310022G15Rik|4833414K03Rik|5033407O22Rik|CHAK|CHAK1|LTrpC-7|Ltpr7|Ltrpc7|TRPPLIK	transient receptor potential cation channel, subfamily M, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-92698862-4	chr7	92698364	92699364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28952.0	NM_029078	74737.0	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	1.0	16.0	20.5	25.0	31.5	21.0
Merged-chr7-63858687-4	chr7	63858178	63859178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58179.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	3.0	0.0	1.5	0.0	3.0	2.0
Merged-chr11-49243910-4	chr11	49243388	49244388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010794)	promoter-TSS (NM_010794)	-303.0	NM_010794	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-84551296-3	chr7	84550778	84551778	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045098, intron 1 of 2)	intron (NR_045098, intron 1 of 2)	22324.0	NR_045098	100039239.0	Mm.44882	NR_045098		Gm2115	C77713	predicted gene 2115	ncRNA	0.0	14.0	1.0	2.0	1.0	1.5
Merged-chr10-122742240-2	chr10	122741740	122742740	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	62925.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143473675-4	chr7	143473179	143474179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008767)	promoter-TSS (NM_008767)	-76.0	NM_008767	18400.0	Mm.271740	NM_008767	ENSMUSG00000000154	Slc22a18	AW260131|BWR1A|BWSCR1A|HET|ITM|Impt1|Orctl2|Slc22a1l|TSSC5|p45-BWR1A	solute carrier family 22 (organic cation transporter), member 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56626927-4	chr17	56626409	56627409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028782)	promoter-TSS (NM_028782)	-6.0	NM_028782	74142.0	Mm.329136	NM_028782	ENSMUSG00000041168	Lonp1	1200017E13Rik|LON|Prss15	lon peptidase 1, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-127829867-4	chr8	127829379	127830379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	448346.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	11.5	38.0	28.5	19.0	35.5	35.5
Merged-chr10-21777350-4	chr10	21776845	21777845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	86500.0	NR_045843	432436.0	Mm.244553	NM_001004162	ENSMUSG00000056716	Gm5420	EG432436	predicted gene 5420	ncRNA	1.0	1.5	8.5	0.0	4.5	2.0
Merged-chr8-126884362-4	chr8	126883863	126884863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35343.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19501874-4	chr7	19501366	19502366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6465.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58507161-3	chr16	58506582	58507582	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 2 of 10)	B3|SINE|B2	16344.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87122090-4	chr11	87121585	87122585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025377, exon 4 of 4)	3' UTR (NM_025377, exon 4 of 4)	-4990.0	NM_197987	68729.0	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23346979-4	chr16	23346470	23347470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 5 of 7)	MTEa|LTR|ERVL-MaLR	56500.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6601513-4	chr15	6600993	6601993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011815, intron 1 of 17)	intron (NM_011815, intron 1 of 17)	21646.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96333457-4	chr10	96332981	96333981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	107274.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81860990-4	chr15	81860480	81861480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2654.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113644697-4	chr5	113644229	113645229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	-1126.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-25237184-2	chr19	25236684	25237684	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001348180, exon 1 of 13)	5' UTR (NM_001348180, exon 1 of 13)	209.0	NM_001348180	107351.0	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	0.0	0.0	0.0	2.0	0.0	0.0
Merged-chr10-81317793-2	chr10	81317293	81318293	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008844, exon 18 of 18)	3' UTR (NM_008844, exon 18 of 18)	-3310.0	NM_027381	70312.0	Mm.87628	NM_027381	ENSMUSG00000034889	Cactin	2510012J08Rik	cactin, spliceosome C complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67245635-7	chr18	67245120	67246120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357518, exon 1 of 11)	5' UTR (NM_001357518, exon 1 of 11)	210.0	NM_172630	225651.0	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	Pgap5	metallophosphoesterase 1	protein-coding	33.5	66.5	66.5	28.0	104.5	77.5
Merged-chr13-55016694-4	chr13	55016191	55017191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206392, intron 1 of 17)	intron (NM_001206392, intron 1 of 17)	4128.0	NM_001206390	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	104.0	192.0	176.0	58.0	144.5	108.5
Merged-chr5-66083527-4	chr5	66083042	66084042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	B3|SINE|B2	14637.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	3.0	35.0	15.0	12.0	21.5	23.5
Merged-chr9-18292168-4	chr9	18291657	18292657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025844)	promoter-TSS (NM_025844)	-110.0	NM_025844	66917.0	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21724321-4	chr9	21723766	21724766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252659, intron 1 of 17)	intron (NM_001252659, intron 1 of 17)	690.0	NM_010700	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104638568-4	chr3	104638035	104639035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009196)	promoter-TSS (NM_009196)	-129.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39241780-4	chr6	39241251	39242251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34978.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-101010810-4	chr3	101010310	101011310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167906, intron 6 of 8)	intron (NM_001167906, intron 6 of 8)	18685.0	NM_001167906	630146.0	Mm.190915	NM_001099332	ENSMUSG00000086564	Cd101	EWI-101|Gm1016|Gm734|Igsf2	CD101 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119085627-6	chr11	119085152	119086152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007625, intron 2 of 4)	C-rich|Low_complexity|Low_complexity	585.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	15.0	54.0	34.0	1.5	8.5	0.0
Merged-chr18-36364344-2	chr18	36363844	36364844	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081365, intron 1 of 2)	intron (NM_001081365, intron 1 of 2)	15720.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60537612-4	chr11	60537122	60538122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172943)	promoter-TSS (NM_172943)	-61.0	NM_172943	268420.0	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45405354-4	chr9	45404859	45405859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007503)	promoter-TSS (NM_007503)	-718.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-3080754-2	chr17	3080277	3081277	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NR_003519, intron 2 of 7)	intron (NR_003519, intron 2 of 7)	3406.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21314803-2	chr9	21314303	21315303	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2470.0	NM_009678	11768.0	Mm.22239	NM_009678	ENSMUSG00000003309	Ap1m2	D9Ertd818e|[m]1B|mu1B	adaptor protein complex AP-1, mu 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91083088-4	chr2	91082583	91083583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12768.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	32.5	86.0	48.5	44.5	99.0	81.0
Merged-chr2-25196000-4	chr2	25195507	25196507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146115, intron 1 of 1)	intron (NM_146115, intron 1 of 1)	806.0	NM_146115	227612.0	Mm.119747	NM_146115	ENSMUSG00000059555	Tor4a	A830007P12Rik	torsin family 4, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-30004813-4	chr17	30004325	30005325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148926)	promoter-TSS (NM_148926)	-214.0	NM_148926	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	40.5	203.0	125.5	85.5	169.0	123.0
Merged-chr12-69423016-4	chr12	69422475	69423475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50825.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	7.0	3.0	12.5	11.5	30.5	11.5
Merged-chr11-83789433-4	chr11	83788919	83789919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35782.0	NM_145432	217026.0	Mm.117874	NM_145432	ENSMUSG00000000976	Heatr6	2700008B19Rik|BB135312|BB249351	HEAT repeat containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-99336320-3	chr4	99335818	99336818	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	142171.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	2.5	0.0	0.0	2.5	0.0	0.0
Merged-chr16-76532939-4	chr16	76532438	76533438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15857.0	NR_155449	102632730.0		NR_155449		Gm30726	-	predicted gene, 30726	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-100934770-4	chr14	100934255	100935255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	265314.0	NM_029680	76627.0	Mm.31415	NM_029680	ENSMUSG00000042888	Prr30	1700110M21Rik	proline rich 30	protein-coding	11.5	9.5	13.0	6.0	1.0	17.5
Merged-chr3-89459165-4	chr3	89458653	89459653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026784)	promoter-TSS (NM_026784)	35.0	NM_026784	68603.0	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-3403846-7	chr9	3403358	3404358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027545)	promoter-TSS (NM_027545)	-227.0	NM_027545	244672.0	Mm.245482	NM_027545	ENSMUSG00000025898	Cwf19l2	3230401L03Rik|9030209E10	CWF19-like 2, cell cycle control (S. pombe)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16048321-4	chr7	16047802	16048802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23543.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-10462611-1	chr10	10462111	10463111	+	1000.0	f0_c57.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	9703.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	28.5	43.5	28.0	2.0	18.0	7.5
Merged-chr7-128049002-4	chr7	128048486	128049486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-13654.0	NM_001082960	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109611744-4	chr11	109611244	109612244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145940)	promoter-TSS (NM_145940)	-355.0	NM_145940	52639.0	Mm.35817	NM_145940	ENSMUSG00000041895	Wipi1	4930533H01Rik|AW411817|D11Ertd498e	WD repeat domain, phosphoinositide interacting 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-40962525-2	chr14	40962025	40963025	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	4371.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-60627613-4	chr1	60627105	60628105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60840.0	NM_001045513	77300.0	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	24.0	28.0	38.0	18.0	45.5	29.0
Merged-chr4-130807034-4	chr4	130806517	130807517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	14480.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166696815-4	chr2	166696294	166697294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	MTD|LTR|ERVL-MaLR	17038.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80255134-4	chr15	80254643	80255643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287180)	promoter-TSS (NM_001287180)	-41.0	NM_001287180	11911.0	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	287.5	663.5	619.0	268.0	758.0	652.0
Merged-chr4-145200249-4	chr4	145199793	145200793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5288.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90700367-4	chr5	90699847	90700847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58951.0	NM_009141	20311.0	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	7.0	11.5	7.5	7.0	11.5	7.5
Merged-chr9-22327986-4	chr9	22327528	22328528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2662.0	NR_033622	625603.0	Mm.37987	NR_033622		Gm6607	EG625603	40S ribosomal protein S20 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172207386-4	chr1	172206868	172207868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001329869)	promoter-TSS (NM_001329869)	-564.0	NM_011063	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	100.0	175.5	152.5	122.5	256.5	175.0
Merged-chr13-102689865-4	chr13	102689349	102690349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3698.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117258073-4	chr8	117257577	117258577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	(T)n|Simple_repeat|Simple_repeat	1058.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-23246755-4	chr19	23246260	23247260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252684, intron 8 of 24)	L2|LINE|L2	25839.0	NM_001252685	226026.0	Mm.23267	NM_153808	ENSMUSG00000024943	Smc5	MLZ-453|SMC-5|Smc5l1|mKIAA0594|mSMC5	structural maintenance of chromosomes 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95709414-2	chr16	95708914	95709914	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011809, intron 2 of 9)	intron (NM_011809, intron 2 of 9)	7007.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-145167112-4	chr5	145166599	145167599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133735)	promoter-TSS (NM_133735)	5.0	NM_133735	71799.0	Mm.277413	NM_133735	ENSMUSG00000029624	Ptcd1	1110069M14Rik	pentatricopeptide repeat domain 1	protein-coding	47.0	127.0	60.5	41.0	90.0	76.5
Merged-chr10-128232187-4	chr10	128231695	128232695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008600)	TTS (NM_008600)	132.0	NM_001136082	21853.0	Mm.6458	NM_011589	ENSMUSG00000039994	Timeless	C77407|Debt69|tim	timeless circadian clock 1	protein-coding	13.5	40.0	35.5	13.5	43.5	34.5
Merged-chr1-172501861-4	chr1	172501362	172502362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178598, intron 1 of 4)	intron (NM_178598, intron 1 of 4)	1616.0	NM_178598	21346.0	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	18.0	63.5	57.0	10.5	33.0	23.5
Merged-chr10-116580638-2	chr10	116580138	116581138	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359248)	promoter-TSS (NM_001359248)	-102.0	NM_001359248	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-149246197-4	chr5	149245680	149246680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18824.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129490085-4	chr2	129489570	129490570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177653, intron 1 of 6)	intron (NM_177653, intron 1 of 6)	46532.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	271.5	681.5	516.5	334.5	650.0	427.0
Merged-chr19-60811628-4	chr19	60811148	60812148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347464)	promoter-TSS (NM_001347464)	93.0	NM_001347464	67894.0	Mm.26148	NM_026437	ENSMUSG00000024993	Fam45a	1810055E12Rik	family with sequence similarity 45, member A	protein-coding	77.5	87.5	155.5	42.0	79.5	57.0
Merged-chr4-132960929-2	chr4	132960429	132961429	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13166.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11006230-4	chr16	11005731	11006731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2667.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120453383-4	chr6	120452890	120453890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9807.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-47230524-4	chr13	47229995	47230995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 4 of 7)	intron (NM_146042, intron 4 of 7)	36492.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	60.5	111.0	90.0	72.0	117.0	117.0
Merged-chr1-37496199-4	chr1	37495698	37496698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290801, intron 2 of 14)	intron (NM_001290801, intron 2 of 14)	-7593.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-74808314-1	chr13	74807814	74808814	+	1000.0	f1_balb.idr	promoter-TSS (NM_009817)	promoter-TSS (NM_009817)	-354.0	NM_009817	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	50.5	122.0	101.0	11.0	19.5	24.0
Merged-chr12-85381819-4	chr12	85381315	85382315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-7098.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74238331-4	chr1	74237826	74238826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 2 of 10)	intron (NM_001357387, intron 2 of 10)	1809.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26243768-4	chr17	26243251	26244251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	491.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	59.5	147.0	125.5	55.0	151.5	96.5
Merged-chr9-65718366-4	chr9	65717854	65718854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172536, intron 3 of 9)	intron (NM_172536, intron 3 of 9)	41806.0	NM_001301307	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32744786-4	chr5	32744280	32745280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347332, intron 2 of 8)	intron (NM_001347332, intron 2 of 8)	1562.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	37.0	72.0	51.0	55.5	63.5	34.0
Merged-chr8-46163668-4	chr8	46163160	46164160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357215)	promoter-TSS (NM_001357215)	9.0	NM_025747	66756.0	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430	cilia and flagella associated protein 97	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57341757-4	chr17	57341262	57342262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16924.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117251964-4	chr4	117251506	117252506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285812)	promoter-TSS (NM_001285812)	55.0	NM_001285815	68777.0	Mm.331805	NM_026837	ENSMUSG00000048772	Tmem53	1110038M16Rik|1500001P22Rik|1700012A05Rik	transmembrane protein 53	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51207193-2	chr3	51206693	51207693	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17254.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90366556-4	chr5	90366063	90367063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030886)	promoter-TSS (NM_030886)	-378.0	NM_198010	81702.0	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24801277-5	chr13	24800839	24801839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024473)	promoter-TSS (NM_024473)	-318.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72239979-5	chr8	72239428	72240428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007456)	promoter-TSS (NM_007456)	-90.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	71.5	140.5	105.0	33.5	132.0	99.0
Merged-chr3-27195370-4	chr3	27194895	27195895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	RMER1A|Other|Other	12391.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19942106-4	chr10	19941624	19942624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	7598.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	2.0	16.5	4.5	10.5	4.0	7.0
Merged-chr1-165237023-4	chr1	165236522	165237522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145513)	promoter-TSS (NM_145513)	-62.0	NM_001357410	226591.0	Mm.21520	NM_145513	ENSMUSG00000040843	Tiprl	1810011K17Rik	TIP41, TOR signalling pathway regulator-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101465165-4	chr11	101464664	101465664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012037, intron 1 of 5)	intron (NM_012037, intron 1 of 5)	1035.0	NM_012037	26949.0	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6910111-4	chr19	6909601	6910601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358444)	promoter-TSS (NM_001358444)	5.0	NM_012021	54683.0	Mm.279782	NM_012021	ENSMUSG00000024953	Prdx5	AOEB166|AOPP|PLP|Pmp20|Prdx6|PrxV	peroxiredoxin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-83546508-4	chr9	83546006	83547006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1832.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-8098245-4	chr14	8097768	8098768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178279)	promoter-TSS (NM_178279)	57.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69008453-4	chr11	69007919	69008919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159519)	promoter-TSS (NM_001159519)	41.0	NM_001159519	237823.0	Mm.340288	NM_001159519	ENSMUSG00000020899	Pfas	4432409B16Rik|FGAMS|FGAR-AT|FGARAT|Gm18|PURL|Sofa	phosphoribosylformylglycinamidine synthase (FGAR amidotransferase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114989948-4	chr11	114989440	114990440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145437)	promoter-TSS (NM_145437)	-54.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	93.0	180.5	116.0	36.0	145.0	102.0
Merged-chr2-124928097-4	chr2	124927608	124928608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140019.0	NM_175034	317750.0	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-137478449-4	chr7	137477953	137478953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40779.0	NR_033611	620016.0	Mm.388932	NR_033611	ENSMUSG00000100863	Gm12669	-	glutaredoxin 3 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170217710-4	chr2	170217216	170218216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-75041.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99050096-4	chr7	99049564	99050564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 6 of 14)	intron (NM_178635, intron 6 of 14)	91080.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	7.0	24.0	9.0	7.5	28.0	13.5
Merged-chr10-121473839-4	chr10	121473342	121474342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	2408.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0.5	14.0	7.0	10.5	21.0	13.5
Merged-chr5-91302935-2	chr5	91302435	91303435	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19859.0	NR_040428	100503265.0	Mm.125059	NR_040428	ENSMUSG00000107198	Gm19619	-	predicted gene, 19619	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55510535-4	chr13	55510045	55511045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114088, intron 2 of 12)	intron (NM_001114088, intron 2 of 12)	-2853.0	NR_105910	102465570.0		NR_105910	ENSMUSG00000099096	Mir6945	Gm27779|mmu-mir-6945	microRNA 6945	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-81658026-4	chr17	81657539	81658539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	80348.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128372409-4	chr2	128371904	128372904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028591, exon 2 of 2)	non-coding (NR_028591, exon 2 of 2)	56947.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	54.0	118.5	55.0	30.0	130.0	77.0
Merged-chr10-13935875-2	chr10	13935390	13936390	+	1000.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-30185.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	2.0	14.0	15.5	14.0	13.0	10.0
Merged-chr16-11175702-4	chr16	11175212	11176212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027502, intron 1 of 22)	intron (NR_027502, intron 1 of 22)	681.0	NR_027502	106205.0	Mm.226860	NM_145931	ENSMUSG00000037965	Zc3h7a	A430104C18Rik|AI447294|AW556219|HSPC055|Zc3h7|Zc3hdc7	zinc finger CCCH type containing 7 A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19313613-2	chr7	19313113	19314113	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3568.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10786561-4	chr16	10786066	10787066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1030.0	NM_001271603	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37261288-4	chr10	37260788	37261788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122362.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79399468-4	chr8	79398968	79399968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008539)	promoter-TSS (NM_008539)	0.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107333191-4	chr3	107332700	107333700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045807)	promoter-TSS (NM_001045807)	89.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-85037000-4	chr15	85036486	85037486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133750)	promoter-TSS (NM_133750)	-76.0	NM_001356617	73225.0	Mm.247535	NM_133750	ENSMUSG00000022434	Fam118a	-	family with sequence similarity 118, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64677177-4	chr5	64676677	64677677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66478.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	20.5	76.5	54.0	20.0	76.5	53.5
Merged-chr4-63089663-3	chr4	63089157	63090157	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028326, intron 4 of 14)	intron (NM_028326, intron 4 of 14)	64515.0	NM_007443	11699.0	Mm.2197	NM_007443	ENSMUSG00000028356	Ambp	AI194774|ASPI|HI-30|Intin4|Itil|UTI	alpha 1 microglobulin/bikunin	protein-coding	0.0	3.0	1.0	2.5	10.0	5.0
Merged-chr10-41887384-4	chr10	41886875	41887875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013370)	promoter-TSS (NM_001013370)	-64.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97767095-2	chr3	97766595	97767595	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_110360, exon 1 of 17)	non-coding (NR_110360, exon 1 of 17)	919.0	NM_178080	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130825984-2	chr4	130825484	130826484	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011520, exon 5 of 5)	3' UTR (NM_011520, exon 5 of 5)	33447.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117393419-4	chr10	117392927	117393927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16454.0	NM_001310609	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	43.0	80.5	68.5	34.5	71.0	73.0
Merged-chr11-20169166-4	chr11	20168661	20169661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32251.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	2.5	2.0	2.0	2.5	4.5	0.0
Merged-chr7-25705890-4	chr7	25705371	25706371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011577)	TTS (NM_011577)	13182.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-33245092-4	chr14	33244597	33245597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	28274.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31111653-4	chr6	31111103	31112103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-48510.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141637637-2	chr7	141637137	141638137	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330001, intron 31 of 33)	intron (NM_001330001, intron 31 of 33)	16936.0	NR_106030	102466798.0		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5707701-4	chr11	5707200	5708200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026080)	promoter-TSS (NM_026080)	-1.0	NM_026080	64660.0	Mm.7328	NM_026080	ENSMUSG00000020477	Mrps24	3110030K20Rik|AI414579|Rpms24	mitochondrial ribosomal protein S24	protein-coding	7.0	4.0	11.5	17.0	15.5	7.0
Merged-chr10-99467556-8	chr10	99467066	99468066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-141605.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91483668-4	chr2	91483153	91484153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 16 of 37)	B3|SINE|B2	26122.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	17.0	70.5	49.0	18.5	38.0	51.0
Merged-chr6-38974045-4	chr6	38973545	38974545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	intron (NM_011539, intron 3 of 12)	55059.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-140750686-4	chr6	140750190	140751190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	123805.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-54013442-4	chr5	54012960	54013960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	14937.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137684848-4	chr5	137684366	137685366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303266)	promoter-TSS (NM_001303266)	-113.0	NM_001303266	231801.0	Mm.260869	NM_145566	ENSMUSG00000029722	Agfg2	A630095P14Rik|Hrbl|RAB-R|RABR	ArfGAP with FG repeats 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-106545760-4	chr3	106545262	106546262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293694, intron 1 of 8)	intron (NM_001293694, intron 1 of 8)	1863.0	NM_001357818	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97356930-4	chr7	97356421	97357421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14696.0	NM_199035	381903.0	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	96.5	103.5	109.0	60.5	162.5	119.0
Merged-chr7-19851018-2	chr7	19850518	19851518	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001270489)	promoter-TSS (NM_001270489)	-985.0	NM_001270489	100502736.0	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103967060-4	chr2	103966590	103967590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142337, intron 1 of 3)	intron (NM_001142337, intron 1 of 3)	-2467.0	NM_001142336	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94148266-4	chr10	94147814	94148814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011629, intron 1 of 13)	CpG	383.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	94.0	294.0	271.0	66.0	201.5	160.0
Merged-chr7-15948552-4	chr7	15948061	15949061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153068)	TTS (NM_153068)	-2453.0	NM_133831	68077.0	Mm.277634	NM_133831	ENSMUSG00000041560	Nop53	5330430H08Rik|9430097C02Rik|AU041936|AW536441|Gltscr2|PICT-1|R74911	NOP53 ribosome biogenesis factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166446712-4	chr2	166446209	166447209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015558)	promoter-TSS (NR_015558)	-742.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117019421-4	chr4	117018930	117019930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355225)	promoter-TSS (NM_001355225)	28.0	NM_001111277	108067.0	Mm.34612	NM_175135	ENSMUSG00000028683	Eif2b3	1190002P15Rik	eukaryotic translation initiation factor 2B, subunit 3	protein-coding	3.0	51.0	19.0	10.5	45.0	27.0
Merged-chr5-135149137-2	chr5	135148637	135149637	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_013763)	promoter-TSS (NM_013763)	-574.0	NM_013763	27368.0	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-59072048-4	chr19	59071545	59072545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 1 of 16)	intron (NM_001114312, intron 1 of 16)	4024.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54091862-4	chr11	54091350	54092350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9074.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-162571579-4	chr1	162571045	162572045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016796, intron 1 of 7)	CpG	717.0	NM_016796	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	190.5	458.0	345.5	254.0	506.0	410.0
Merged-chr3-31134845-4	chr3	31134337	31135337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	-15083.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118740709-4	chr7	118740233	118741233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027815, exon 1 of 31)	exon (NM_027815, exon 1 of 31)	462.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	100.5	225.5	203.5	38.0	241.0	158.0
Merged-chr4-108428460-4	chr4	108427940	108428940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21727.0	NM_024198	67305.0	Mm.20164	NM_024198	ENSMUSG00000028597	Gpx7	3110050F08Rik|AI327032|GPX6	glutathione peroxidase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117417518-4	chr10	117416992	117417992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29943.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117412311-4	chr2	117411909	117412909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69532.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28374872-4	chr7	28374356	28375356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-2194.0	NM_001083912	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33530768-3	chr16	33530271	33531271	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 1 of 11)	intron (NM_001083902, intron 1 of 11)	12176.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170924712-4	chr1	170924207	170925207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160215, intron 1 of 4)	intron (NM_001160215, intron 1 of 4)	2876.0	NM_145141	98752.0	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-115887913-4	chr3	115887451	115888451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027193)	promoter-TSS (NM_027193)	108.0	NR_027894	68161.0	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	61.0	259.5	168.0	71.0	266.0	163.5
Merged-chr18-53251729-2	chr18	53251229	53252229	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	ID4_|SINE|ID	6067.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111119424-4	chr10	111118922	111119922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45380.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-151842812-4	chr4	151842324	151843324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 1 of 23)	intron (NM_001081557, intron 1 of 23)	18944.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114258420-2	chr6	114257920	114258920	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24215.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40313202-4	chr4	40312697	40313697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040663)	promoter-TSS (NR_040663)	-35.0	NR_040663	75819.0	Mm.399244	NR_040663	ENSMUSG00000087137	4930509K18Rik	-	RIKEN cDNA 4930509K18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39415776-4	chr10	39415274	39416274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	MIR3|SINE|MIR	45975.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22838900-4	chr8	22838391	22839391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-20648.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	31.5	71.0	61.0	24.5	72.0	66.0
Merged-chr3-145938827-2	chr3	145938327	145939327	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151446, intron 2 of 3)	intron (NR_151446, intron 2 of 3)	813.0	NR_151446	66421.0	Mm.25137	NM_025555	ENSMUSG00000036873	2410004B18Rik	4930572C24Rik	RIKEN cDNA 2410004B18 gene	protein-coding	0.0	4.0	3.5	0.0	2.0	4.5
Merged-chr10-41571705-2	chr10	41571205	41572205	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 36 of 47)	B4|SINE|B4	3689.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122261444-4	chr14	122260954	122261954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029556, intron 1 of 7)	intron (NM_029556, intron 1 of 7)	-27816.0	NR_015532	68245.0	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27357606-7	chr7	27357079	27358079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199236, intron 18 of 18)	intron (NM_001199236, intron 18 of 18)	-1571.0	NM_138676	192192.0	Mm.21297	NM_138676	ENSMUSG00000089832	Shkbp1	B930062H15Rik|Sb1	Sh3kbp1 binding protein 1	protein-coding	69.5	197.5	119.0	69.0	165.0	105.5
Merged-chr7-127422037-4	chr7	127421524	127422524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026999)	promoter-TSS (NM_026999)	10.0	NM_026999	69234.0	Mm.20301	NM_026999	ENSMUSG00000045251	Zfp688	2810407K09Rik|AI326029	zinc finger protein 688	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-35539231-2	chr6	35538731	35539731	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008098, intron 1 of 3)	CpG	657.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94098502-4	chr8	94098000	94099000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026116, exon 1 of 17)	5' UTR (NM_026116, exon 1 of 17)	311.0	NM_026116	67378.0	Mm.292107	NM_026116	ENSMUSG00000031755	Bbs2	2410125H22Rik|AI447581	Bardet-Biedl syndrome 2 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93365115-4	chr10	93364621	93365621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28910.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	4.0	10.5	25.5	83.0	143.5	115.0
Merged-chr17-13656741-2	chr17	13656241	13657241	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102647.0	NR_045437	72578.0	Mm.46549	NR_045436	ENSMUSG00000038347	2700054A10Rik	-	RIKEN cDNA 2700054A10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70804130-4	chr8	70803616	70804616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4333.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	8.5	32.5	22.0	23.5	15.5	22.0
Merged-chr5-114922079-4	chr5	114921580	114922580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-1160.0	NM_001359946	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	50.5	141.5	105.0	61.5	127.0	135.0
Merged-chr19-5803227-1	chr19	5802727	5803727	+	1000.0	f0_balb.idr	promoter-TSS (NR_002847)	promoter-TSS (NR_002847)	-555.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-59996857-4	chr5	59996329	59997329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10827.0	NR_040682	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24463941-4	chr13	24463421	24464421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111110, intron 13 of 16)	intron (NM_001111110, intron 13 of 16)	48799.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-24699522-4	chr1	24699016	24700016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026719, intron 3 of 15)	intron (NM_026719, intron 3 of 15)	20598.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	2.0	0.0	2.0	0.0	2.0	9.0
Merged-chr12-3874942-2	chr12	3874442	3875442	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 6 of 22)	B1_Mus1|SINE|Alu	-12698.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43326874-4	chr17	43326369	43327369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33562.0	NM_001357332	224792.0	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	5.5	14.0	2.0	2.0	7.5	0.5
Merged-chr15-101981511-4	chr15	101981009	101982009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22833.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94369892-2	chr16	94369392	94370392	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009441)	promoter-TSS (NM_009441)	438.0	NM_001159619	56176.0	Mm.474449	NM_019543	ENSMUSG00000022940	Pigp	Dcrc|Dscr5	phosphatidylinositol glycan anchor biosynthesis, class P	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-19656163-4	chr5	19655669	19656669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 1 of 22)	intron (NM_001170746, intron 1 of 22)	-251349.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90130948-2	chr7	90130448	90131448	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	735.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	147.0	322.0	241.0	162.5	311.5	266.0
Merged-chr17-50528693-4	chr17	50528196	50529196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	MTEa|LTR|ERVL-MaLR	19149.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	6.5	38.0	42.5	24.0	46.5	27.0
Merged-chr10-34113465-4	chr10	34112957	34113957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	14515.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114194483-4	chr7	114193974	114194974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	60206.0	NM_033370	70349.0	Mm.277024	NM_033370	ENSMUSG00000030754	Copb1	2610019B04Rik	coatomer protein complex, subunit beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67549252-7	chr10	67548762	67549762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005419)	promoter-TSS (NM_001005419)	-307.0	NM_001005419	211488.0	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76802105-4	chr15	76801611	76802611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	16059.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118167645-2	chr11	118167145	118168145	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 12 of 12)	intron (NM_001112700, intron 12 of 12)	-38426.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44305772-4	chr9	44305246	44306246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172162)	promoter-TSS (NM_172162)	-75.0	NM_172162	102423.0	Mm.24570	NM_172162	ENSMUSG00000032119	Hinfp	AA589481|HiNF-P|Mizf	histone H4 transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-82839460-4	chr1	82838957	82839957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010472)	promoter-TSS (NM_010472)	-3.0	NM_010472	15463.0	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155992511-4	chr4	155992000	155993000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011341)	promoter-TSS (NM_011341)	178.0	NM_080445	117592.0	Mm.440185	NM_080445	ENSMUSG00000050796	B3galt6	BB129894|GalTII	UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	protein-coding	9.5	4.0	14.0	7.0	9.0	11.0
Merged-chr2-128796669-4	chr2	128796152	128797152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 18 of 18)	intron (NM_008587, intron 18 of 18)	-21651.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	18.5	16.0	10.0	3.0	24.0	12.5
Merged-chr5-111044689-4	chr5	111044201	111045201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	40557.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	4.5	1.5	2.0	0.0	0.0	0.0
Merged-chr2-167815316-4	chr2	167814758	167815758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117069.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118616799-2	chr9	118616299	118617299	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	10090.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-137981592-4	chr3	137981109	137982109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310753)	promoter-TSS (NM_001310753)	-60.0	NM_011932	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	43.0	137.0	138.0	62.0	123.5	132.5
Merged-chr5-118404620-4	chr5	118404113	118405113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-156106.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86672017-4	chr4	86671537	86672537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1978.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	113.5	195.5	151.0	85.5	192.5	139.0
Merged-chr6-124682430-4	chr6	124681942	124682942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149320, intron 1 of 11)	intron (NR_149320, intron 1 of 11)	19338.0	NM_145130	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64970085-4	chr5	64969587	64970587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026667)	promoter-TSS (NM_026667)	12.0	NM_026667	68303.0	Mm.258545	NM_026667	ENSMUSG00000029185	Fam114a1	1190001N04Rik|9130005N14Rik|Noxp20	family with sequence similarity 114, member A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50528681-4	chr9	50528170	50529170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011220)	promoter-TSS (NM_011220)	-29.0	NM_011220	19286.0	Mm.35856	NM_011220	ENSMUSG00000032067	Pts	PTPS	6-pyruvoyl-tetrahydropterin synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-60252615-2	chr14	60252115	60253115	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1136.0	NM_001362439	71844.0	Mm.258051	NM_170591	ENSMUSG00000114797	Nupl1	1700017F11Rik|Nup58|mKIAA0410	nucleoporin like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35163845-4	chr7	35163350	35164350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22535.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	1.0	2.0	0.0	1.0	2.0	0.0
Merged-chr19-45560665-4	chr19	45560183	45561183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020032)	promoter-TSS (NM_020032)	98.0	NM_172639	226162.0	Mm.21978	NM_172639	ENSMUSG00000041035	Dpcd	Ndac	deleted in primary ciliary dyskinesia	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88127390-4	chr17	88126898	88127898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190356, intron 1 of 1)	L1M4|LINE|L1	1886.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42762690-2	chr10	42762190	42763190	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359285, intron 1 of 19)	intron (NM_001359285, intron 1 of 19)	1194.0	NM_153055	140740.0	Mm.214344	NM_153055	ENSMUSG00000019802	Sec63	5730478J10Rik|AI649014|AW319215	SEC63-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67903165-4	chr15	67902673	67903673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	355683.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	4.5	27.5	13.0	7.0	7.0	0.0
Merged-chr2-167505422-4	chr2	167504924	167505924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153838, intron 1 of 4)	intron (NR_153838, intron 1 of 4)	1981.0	NM_001360930	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-31911229-4	chr18	31910675	31911675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026006, exon 1 of 1)	exon (NM_026006, exon 1 of 1)	728.0	NM_026006	67158.0	Mm.31537	NM_026006	ENSMUSG00000044982	Sft2d3	2610206C24Rik|AI847965|AW046173	SFT2 domain containing 3	protein-coding	40.0	104.5	89.5	4.5	71.5	50.5
Merged-chr2-167685748-2	chr2	167685248	167686248	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3167.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82526052-4	chr18	82525571	82526571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025245, intron 3 of 3)	intron (NM_001025245, intron 3 of 3)	-28392.0	NM_001025258	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134704396-4	chr4	134703892	134704892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207237)	promoter-TSS (NM_207237)	-102.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66742743-4	chr15	66742245	66743245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 34 of 47)	intron (NM_009375, intron 34 of 47)	71975.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	22.0	109.5	51.0	45.5	101.5	34.5
Merged-chr7-116445039-2	chr7	116444539	116445539	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1581.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124054327-2	chr5	124053827	124054827	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-22067.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79461236-2	chr11	79460736	79461736	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010897, intron 30 of 57)	C-rich|Low_complexity|Low_complexity	22795.0	NR_045305	104522.0	Mm.436987	NR_045305	ENSMUSG00000091523	AU040972	AU040954	expressed sequence AU040972	ncRNA	1.5	8.5	11.5	8.0	7.5	4.5
Merged-chr19-44422347-6	chr19	44421836	44422836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14627.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29694149-4	chr6	29693660	29694660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146173)	promoter-TSS (NM_146173)	-54.0	NM_001301407	232670.0	Mm.225289	NM_146173	ENSMUSG00000001763	Tspan33	1300010A20Rik|Pen	tetraspanin 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3712191-4	chr4	3711726	3712726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	-2738.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	70.0	125.5	98.5	68.0	128.5	101.0
Merged-chr14-21857512-1	chr14	21857012	21858012	+	1000.0	f1_c57bl6.idr	TTS (NM_176925)	TTS (NM_176925)	-8602.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	0.0	6.0	0.0	1.5	0.0	3.5
Merged-chr3-137947038-4	chr3	137946514	137947514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 4 of 8)	intron (NM_011932, intron 4 of 8)	28459.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11808963-4	chr11	11808456	11809456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163359)	promoter-TSS (NM_001163359)	6.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	9.0	31.5	25.5	2.5	60.0	25.0
Merged-chr2-126476287-4	chr2	126475794	126476794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 3 of 27)	intron (NM_001359975, intron 3 of 27)	15259.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98956466-4	chr13	98955985	98956985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	28080.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	9.0	36.5	21.0	4.0	32.5	19.5
Merged-chr12-80127416-4	chr12	80126913	80127913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033514, intron 2 of 2)	intron (NR_033514, intron 2 of 2)	5431.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	17.0	25.0	25.0	21.5	29.0	26.0
Merged-chr11-98204236-2	chr11	98203736	98204736	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001109626, exon 1 of 14)	exon (NM_001109626, exon 1 of 14)	931.0	NM_001109626	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148492395-4	chr2	148491868	148492868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48833.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133011470-4	chr4	133010951	133011951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146155)	promoter-TSS (NM_146155)	-55.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40317008-4	chr10	40316518	40317518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT-int|LTR|ERVL-MaLR	-14830.0	NM_009665	11702.0	Mm.253533	NM_009665	ENSMUSG00000075232	Amd1	AdoMetDC|Amd-1|SAMDC|SAMDC 1|adoMetDC1	S-adenosylmethionine decarboxylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59462270-4	chr2	59461752	59462752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B2|LTR|ERVL	-22401.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85348524-4	chr12	85348027	85349027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 3 of 4)	intron (NM_026775, intron 3 of 4)	-9165.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69059630-4	chr11	69059122	69060122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028005)	promoter-TSS (NM_028005)	-153.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8610072-4	chr11	8609555	8610555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	54480.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-66144963-4	chr2	66144481	66145481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20188.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32118079-3	chr9	32117581	32118581	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195632, intron 1 of 21)	intron (NM_001195632, intron 1 of 21)	1945.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124015974-4	chr5	124015490	124016490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	16270.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	3.0	12.5	4.5	9.5	15.5	11.0
Merged-chr18-9489679-6	chr18	9489281	9490281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39627.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	14.0	15.0	10.5	9.5	10.0	10.5
Merged-chr5-125390761-2	chr5	125390261	125391261	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019639)	promoter-TSS (NM_019639)	-744.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-85451401-4	chr6	85450906	85451906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163427)	promoter-TSS (NM_001163427)	-99.0	NM_007638	12468.0	Mm.289900	NM_007638	ENSMUSG00000030007	Cct7	AA408524|AL022769|Ccth|Cctz	chaperonin containing Tcp1, subunit 7 (eta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90339783-4	chr5	90339290	90340290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198010, intron 1 of 32)	intron (NM_198010, intron 1 of 32)	26395.0	NM_030886	81702.0	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	0.5	8.0	10.5	4.0	7.0	6.5
Merged-chr4-132843228-4	chr4	132842742	132843742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146154)	promoter-TSS (NM_146154)	-73.0	NM_146154	100336.0	Mm.105230	NM_146154	ENSMUSG00000028882	Ppp1r8	6330548N22Rik|AU044684|NIPP1	protein phosphatase 1, regulatory (inhibitor) subunit 8	protein-coding	0.5	0.0	1.0	9.0	7.5	0.0
Merged-chr10-117224398-4	chr10	117223907	117224907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026570)	promoter-TSS (NM_026570)	100.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91779164-4	chr12	91778652	91779652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	CpG	7284.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154899159-4	chr4	154898635	154899635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025582)	promoter-TSS (NM_025582)	-92.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-63969000-4	chr5	63968502	63969502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145923)	promoter-TSS (NM_145923)	-105.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-26791994-4	chr10	26791495	26792495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	19483.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20581411-4	chr9	20580887	20581887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172919)	promoter-TSS (NM_172919)	59.0	NM_172919	244721.0	Mm.86627	NM_172919	ENSMUSG00000058192	Zfp846	2210010B09Rik|9130221F13|Znf846	zinc finger protein 846	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37255682-4	chr9	37255187	37256187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020258)	promoter-TSS (NM_020258)	51.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74523581-4	chr17	74523039	74524039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4756.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20204513-4	chr11	20204018	20205018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 1 of 5)	B1F|SINE|Alu	3106.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	36.5	116.5	83.0	36.0	89.0	67.0
Merged-chr15-99341242-4	chr15	99340743	99341743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310622, intron 1 of 25)	MTD|LTR|ERVL-MaLR	29239.0	NM_001310623	22379.0	Mm.29043	NM_011711	ENSMUSG00000023008	Fmnl3	2700073B04Rik|FBP11|Wbp3|mKIAA2014	formin-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-17144356-4	chr19	17143854	17144854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181348, intron 9 of 19)	intron (NM_181348, intron 9 of 19)	188236.0	NM_181348	353211.0	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	7.5	46.5	22.0	9.0	20.5	23.0
Merged-chr2-118804692-4	chr2	118804185	118805185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9318.0	NM_026412	51944.0	Mm.252695	NM_026412	ENSMUSG00000027331	Knstrn	1700025D04Rik|C15orf23|D2Ertd750e|SKAP|Traf4af1	kinetochore-localized astrin/SPAG5 binding	protein-coding	6.0	12.5	6.0	1.0	7.5	7.0
Merged-chr11-83577598-2	chr11	83577098	83578098	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011338, intron 1 of 3)	MER74B|LTR|ERVL	1038.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112666828-4	chr13	112666299	112667299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178746, intron 1 of 14)	intron (NM_178746, intron 1 of 14)	6033.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	114.5	174.0	169.5	74.5	203.5	161.5
Merged-chr7-29169561-3	chr7	29169079	29170079	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182696)	promoter-TSS (NM_182696)	-631.0	NM_001358852	243897.0	Mm.389886	NM_182694	ENSMUSG00000031493	Ggn	AI593290	gametogenetin	protein-coding	14.0	15.5	14.0	0.0	13.5	13.0
Merged-chr9-31130480-2	chr9	31129980	31130980	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011176, intron 1 of 18)	intron (NM_011176, intron 1 of 18)	1319.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-117583690-2	chr6	117583190	117584190	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88455.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31108405-4	chr2	31107902	31108902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 1 of 15)	MTD|LTR|ERVL-MaLR	-11902.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111977936-4	chr9	111977413	111978413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	140798.0	NR_029823	723815.0		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-32397654-4	chr3	32397152	32398152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-31987.0	NM_009517	22401.0	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100704335-4	chr11	100703808	100704808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030150)	promoter-TSS (NM_030150)	-37.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-74207865-4	chr18	74207349	74208349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164355)	promoter-TSS (NM_001164355)	-31.0	NM_025581	66468.0	Mm.283406	NM_025581	ENSMUSG00000036223	Ska1	2810433K01Rik|AV117428	spindle and kinetochore associated complex subunit 1	protein-coding	14.5	55.5	37.5	36.5	49.5	60.5
Merged-chr19-46395770-4	chr19	46395285	46396285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016860)	promoter-TSS (NM_016860)	-50.0	NM_016860	54130.0	Mm.3118	NM_016860	ENSMUSG00000025228	Actr1a	Arp1|alpha-Arp1	ARP1 actin-related protein 1A, centractin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94697130-2	chr16	94696630	94697630	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	85711.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124894208-4	chr6	124893713	124894713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-6013.0	NM_013488	12504.0	Mm.2209	NM_013488	ENSMUSG00000023274	Cd4	L3T4|Ly-4	CD4 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111377765-4	chr12	111377279	111378279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183016)	promoter-TSS (NM_183016)	-61.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13869711-4	chr8	13869197	13870197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181854)	promoter-TSS (NM_181854)	56.0	NM_181854	101994.0	Mm.289346	NM_181854	ENSMUSG00000047710	Champ1	AA675043|AI116001|D8Ertd457e|D8Ertd569e|Zfp828|Znf828|mKIAA1802	chromosome alignment maintaining phosphoprotein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-118562298-4	chr6	118561767	118562767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081112)	promoter-TSS (NM_001081112)	-11.0	NM_001081112	232339.0	Mm.276116	NM_001081112	ENSMUSG00000007827	Ankrd26	5730521P14Rik|BC008111|mKIAA1074	ankyrin repeat domain 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139213290-4	chr7	139212770	139213770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162540)	promoter-TSS (NM_001162540)	-5.0	NM_001143755	76612.0	Mm.17757	NM_027164	ENSMUSG00000015980	Lrrc27	1700071K18Rik|2310044E02Rik	leucine rich repeat containing 27	protein-coding	147.0	276.0	213.0	159.0	285.0	267.5
Merged-chr10-58399589-4	chr10	58399091	58400091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359116, intron 2 of 9)	intron (NM_001359116, intron 2 of 9)	5218.0	NM_001346676	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-138389243-4	chr7	138388751	138389751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183289, intron 3 of 11)	intron (NM_183289, intron 3 of 11)	8479.0	NM_183289	70571.0	Mm.334297	NM_183289	ENSMUSG00000091002	Tcerg1l	5730476P14Rik	transcription elongation regulator 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84995284-4	chr15	84994768	84995768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7297.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-72852725-4	chr2	72852220	72853220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39003.0	NR_102349	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10318259-4	chr17	10317761	10318761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021881, intron 1 of 6)	CpG	1100.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135495698-4	chr4	135495202	135496202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030189)	promoter-TSS (NM_030189)	-285.0	NM_030189	78806.0	Mm.374844	NM_030189	ENSMUSG00000028801	Stpg1	4930403G18Rik|4930555I21Rik|Mapo2	sperm tail PG rich repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32124537-4	chr16	32124057	32125057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24755.0	NM_025892	66994.0	Mm.22990	NM_025892	ENSMUSG00000035790	Cep19	1500031L02Rik|AI428934|AL022620	centrosomal protein 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75086839-4	chr15	75086365	75087365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25072.0	NM_001357693	100041546.0	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3908087-4	chr19	3907602	3908602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136091)	promoter-TSS (NM_001136091)	-969.0	NM_001136091	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91132880-2	chr2	91132380	91133380	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008653, exon 24 of 32)	exon (NM_008653, exon 24 of 32)	14736.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145823007-4	chr2	145822529	145823529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	36913.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-29951677-2	chr5	29951177	29952177	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61437.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19094017-4	chr7	19093504	19094504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011383)	promoter-TSS (NM_011383)	-540.0	NM_011383	20475.0	Mm.3410	NM_011383	ENSMUSG00000040841	Six5	Dmahp|MDMAHP|TrexBF	sine oculis-related homeobox 5	protein-coding	8.0	21.5	3.5	6.0	11.5	6.0
Merged-chr14-16379518-4	chr14	16379016	16380016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009409, intron 1 of 35)	L1M4|LINE|L1	14310.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5845836-4	chr13	5845331	5846331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12261.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-110944871-4	chr13	110944359	110945359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41013.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7064310-4	chr10	7063815	7064815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41130.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-61578583-4	chr2	61578089	61579089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011529)	promoter-TSS (NM_011529)	3.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-6456440-4	chr18	6455954	6456954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007935, intron 2 of 13)	intron (NM_007935, intron 2 of 13)	34192.0	NR_035446	100316773.0		NR_035446	ENSMUSG00000084514	Mir1893	Mirn1893|mmu-mir-1893	microRNA 1893	ncRNA	0.0	5.5	4.5	0.0	17.0	1.0
Merged-chr5-134640154-2	chr5	134639654	134640654	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001312867)	promoter-TSS (NM_001312867)	-745.0	NM_033561	22384.0	Mm.27955	NM_033561	ENSMUSG00000040731	Eif4h	AU018978|D5Ertd355e|E430026L18Rik|Ef4h|Wbscr1|Wscr1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115603894-4	chr11	115603396	115604396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025305)	promoter-TSS (NM_025305)	20.0	NM_001252067	260302.0	Mm.119479	NM_173048	ENSMUSG00000020740	Gga3	C230037M19Rik|mKIAA0154	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding	41.5	118.5	115.0	24.0	62.5	100.0
Merged-chr3-79629506-2	chr3	79628996	79629996	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_025794)	promoter-TSS (NM_025794)	417.0	NM_029482	75939.0	Mm.221520	NM_029482	ENSMUSG00000027811	4930579G24Rik	-	RIKEN cDNA 4930579G24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71132266-2	chr17	71131765	71132765	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-51267.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	1.0	2.0	8.5	0.0	1.5	6.0
Merged-chr3-95229994-4	chr3	95229528	95230528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038708, intron 1 of 4)	intron (NM_001038708, intron 1 of 4)	1085.0	NM_001038708	57912.0	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103170117-2	chr15	103169617	103170617	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6833.0	NM_027885	71726.0	Mm.254820	NM_027885	ENSMUSG00000036061	Smug1	1200013B09Rik|A930006H09Rik|C85220	single-strand selective monofunctional uracil DNA glycosylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-82900307-4	chr10	82899799	82900799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	33673.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	59.5	158.0	122.0	17.5	62.5	31.0
Merged-chr5-136085016-4	chr5	136084515	136085515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039103, intron 1 of 19)	intron (NM_001039103, intron 1 of 19)	1099.0	NM_001039103	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69749699-4	chr8	69749193	69750193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001200023, intron 1 of 3)	CpG	269.0	NM_001200023	620419.0	Mm.460423	NM_001200023	ENSMUSG00000092260	Zfp963	-	zinc finger protein 963	protein-coding	33.5	45.5	47.0	40.5	30.0	22.5
Merged-chr5-115490089-6	chr5	115489650	115490650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5666.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	79.5	230.0	128.5	73.5	251.0	133.5
Merged-chr7-141131274-4	chr7	141130783	141131783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013782)	promoter-TSS (NM_013782)	-3.0	NM_013782	27388.0	Mm.293591	NM_013782	ENSMUSG00000025495	Ptdss2	AI481134|AI988017|PSS2	phosphatidylserine synthase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11441992-4	chr2	11441482	11442482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43482.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84107699-4	chr17	84107204	84108204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29044.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69271022-4	chr8	69270540	69271540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172491)	promoter-TSS (NM_172491)	-40.0	NM_172491	211135.0	Mm.294970	NM_172491	ENSMUSG00000079038	D130040H23Rik	-	RIKEN cDNA D130040H23 gene	protein-coding	7.0	6.5	9.5	11.0	30.0	21.5
Merged-chr6-37419764-4	chr6	37419279	37420279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	22369.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70459484-2	chr11	70458984	70459984	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348337)	promoter-TSS (NM_001348337)	51.0	NM_001029929	574428.0	Mm.425692	NM_001029929	ENSMUSG00000040829	Zmynd15	-	zinc finger, MYND-type containing 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-108191698-4	chr10	108191202	108192202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027892, intron 1 of 25)	intron (NM_027892, intron 1 of 25)	29302.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58281746-2	chr9	58281246	58282246	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28582.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33777059-2	chr17	33776559	33777559	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_020581, exon 6 of 7)	exon (NM_020581, exon 6 of 7)	4516.0	NM_020581	57875.0	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	3.0	0.0	1.0	5.5	0.0	0.5
Merged-chr7-127965007-2	chr7	127964507	127965507	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-2472.0	NM_001347649	233908.0	Mm.277680	NM_139149	ENSMUSG00000030795	Fus	D430004D17Rik|D930039C12Rik|Fus1|Tls	fused in sarcoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-17003030-4	chr11	17002510	17003510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	5708.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	35.0	110.5	76.0	48.5	98.5	76.0
Merged-chr2-91485921-4	chr2	91485416	91486416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172668, exon 17 of 38)	exon (NM_172668, exon 17 of 38)	28385.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	2.0	9.5	5.0	16.5	4.5	4.0
Merged-chr2-126499906-4	chr2	126499421	126500421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359975)	promoter-TSS (NM_001359975)	-74.0	NM_001359975	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117302041-4	chr10	117301526	117302526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9158.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46812628-4	chr11	46812110	46813110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178759, intron 1 of 8)	intron (NM_178759, intron 1 of 8)	1811.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	77.0	207.0	126.5	90.0	209.5	117.0
Merged-chr10-128498800-4	chr10	128498278	128499278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131150)	promoter-TSS (NR_131150)	-93.0	NM_172259	216459.0	Mm.291688	NM_172259	ENSMUSG00000039824	Myl6b	5730437E04Rik|BC037527|MLC1SA	myosin, light polypeptide 6B	protein-coding	13.5	26.5	12.0	2.0	10.5	7.5
Merged-chr11-79140338-4	chr11	79139854	79140854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	6119.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-24997367-4	chr19	24996893	24997893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2136.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	78.5	144.5	72.5	32.5	68.0	48.5
Merged-chr10-59887560-4	chr10	59887011	59888011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019965, intron 1 of 8)	ID4|SINE|ID	7920.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80246353-4	chr7	80245844	80246844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177765)	promoter-TSS (NM_177765)	-32.0	NM_177765	269954.0	Mm.276780	NM_177765	ENSMUSG00000045467	Ttll13	1700111A04Rik|4921538O11|BC024578	tubulin tyrosine ligase-like family, member 13	protein-coding	7.5	10.0	13.0	7.0	9.5	12.0
Merged-chr7-16244291-4	chr7	16243804	16244804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176912)	promoter-TSS (NM_176912)	-150.0	NM_176912	319430.0	Mm.239570	NM_176912	ENSMUSG00000074361	C5ar2	C5L2|E030029A11Rik|Gpr77	complement component 5a receptor 2	protein-coding	75.0	126.5	106.0	49.5	133.5	82.5
Merged-chr19-3913471-2	chr19	3912971	3913971	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144870)	promoter-TSS (NM_144870)	-697.0	NM_001271444	225887.0	Mm.44227	NM_144870	ENSMUSG00000059734	Ndufs8	BC021616|CI-23kD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63118274-2	chr14	63117774	63118774	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4188.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35379517-4	chr17	35379038	35380038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001143689)	promoter-TSS (NM_001143689)	-79.0	NM_001143689	15015.0	Mm.464284	NM_001143689	ENSMUSG00000035929	H2-Q4	H-2Q4|H2-Gs10|Qa-4|Qa4|Qat-4|Qb-1|Qb1	histocompatibility 2, Q region locus 4	protein-coding	159.5	436.0	381.5	199.0	524.0	412.5
Merged-chr11-96929871-2	chr11	96929371	96930371	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146026, intron 1 of 2)	intron (NM_146026, intron 1 of 2)	547.0	NM_146026	217138.0	Mm.342551	NM_146026	ENSMUSG00000047040	Prr15l	Atad4|BC022765|E230006A12Rik	proline rich 15-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76511978-4	chr15	76511481	76512481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010046)	promoter-TSS (NM_010046)	13.0	NM_010046	13350.0	Mm.22633	NM_010046	ENSMUSG00000022555	Dgat1	ARAT|C75990|D15Ertd23e|Dgat	diacylglycerol O-acyltransferase 1	protein-coding	5.5	9.0	16.5	3.5	2.0	8.5
Merged-chr7-138848488-2	chr7	138847988	138848988	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026391, intron 2 of 8)	intron (NM_026391, intron 2 of 8)	2102.0	NM_026391	52432.0	Mm.258739	NM_026391	ENSMUSG00000041769	Ppp2r2d	1300017E19Rik|D7Ertd753e|MDS026	protein phosphatase 2, regulatory subunit B, delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-119484144-4	chr12	119483630	119484630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40720.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135169323-2	chr5	135168823	135169823	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009745, intron 1 of 5)	PB1D7|SINE|Alu	951.0	NM_009745	12054.0	Mm.405834	NM_009745	ENSMUSG00000029681	Bcl7b	-	B cell CLL/lymphoma 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156442288-4	chr1	156441769	156442769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 6 of 15)	intron (NM_009230, intron 6 of 15)	-21354.0	NM_001346967	77352.0	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	40.0	53.5	38.5	25.5	59.0	38.5
Merged-chr2-158163248-4	chr2	158162757	158163757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR67B|LTR|ERVL	-16865.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122407837-4	chr8	122407361	122408361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029993, intron 10 of 18)	intron (NM_001029993, intron 10 of 18)	-14159.0	NM_145834	234836.0	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43631246-2	chr4	43630746	43631746	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355466)	promoter-TSS (NM_001355466)	-689.0	NM_001355466	230103.0	Mm.103477	NM_173788	ENSMUSG00000028469	Npr2	GC-B|GC-B2|GC-B3|cn|mNPR-B|pwe	natriuretic peptide receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111034482-2	chr8	111033982	111034982	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146217, intron 1 of 20)	B1F|SINE|Alu	640.0	NM_146217	234734.0	Mm.24174	NM_146217	ENSMUSG00000031960	Aars	AI316495|C76919|sti	alanyl-tRNA synthetase	protein-coding	50.0	135.5	111.5	49.0	150.0	104.5
Merged-chr12-12263580-4	chr12	12263084	12264084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	1445.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	14.5	65.0	47.0	21.0	35.0	22.5
Merged-chr15-101173967-4	chr15	101173510	101174510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007395)	promoter-TSS (NM_007395)	-62.0	NM_007395	11479.0	Mm.308467	NM_007395	ENSMUSG00000000532	Acvr1b	6820432J04|ALK-4|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-48694741-4	chr2	48694239	48695239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119370.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32199611-4	chr12	32199123	32200123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020272, intron 4 of 10)	intron (NM_020272, intron 4 of 10)	8715.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167764153-2	chr2	167763653	167764653	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72976.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71823746-4	chr6	71823253	71824253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025430)	promoter-TSS (NM_025430)	31.0	NM_025430	66223.0	Mm.28579	NM_025430	ENSMUSG00000052962	Mrpl35	1110066C01Rik	mitochondrial ribosomal protein L35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-104131253-4	chr12	104130763	104131763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173024, intron 2 of 4)	intron (NM_173024, intron 2 of 4)	3267.0	NM_173024	271047.0	Mm.120265	NM_173024	ENSMUSG00000066364	Serpina3b	6A1|A030003A19Rik	serine (or cysteine) peptidase inhibitor, clade A, member 3B	protein-coding	4.0	8.5	10.0	12.5	18.0	10.0
Merged-chr4-154864407-4	chr4	154863902	154864902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_154548, exon 5 of 5)	non-coding (NR_154548, exon 5 of 5)	-5183.0	NM_013783	27390.0	Mm.116944	NM_013783	ENSMUSG00000058183	Mmel1	Mell1|NEP2|NEPII|Nl1|SEP	membrane metallo-endopeptidase-like 1	protein-coding	5.0	50.0	23.0	7.0	20.0	12.0
Merged-chr11-20631909-4	chr11	20631377	20632377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001038625)	promoter-TSS (NM_001038625)	-100.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	19.5	53.0	20.0	12.0	39.0	25.0
Merged-chr10-128298961-4	chr10	128298460	128299460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031252)	promoter-TSS (NM_031252)	-876.0	NM_031252	83430.0	Mm.125482	NM_031252	ENSMUSG00000025383	Il23a	IL-23|p19	interleukin 23, alpha subunit p19	protein-coding	11.0	10.5	11.5	8.5	15.0	17.0
Merged-chr11-54860713-4	chr11	54860197	54861197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029327)	promoter-TSS (NM_029327)	-106.0	NM_029327	75530.0	Mm.83578	NM_029327	ENSMUSG00000020268	Lyrm7	1700024C24Rik|9330147L21Rik	LYR motif containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-60960719-4	chr1	60960231	60961231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17183.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	5.5	20.0	11.0	6.5	30.5	16.0
Merged-chr10-42762334-4	chr10	42761825	42762825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359285, intron 1 of 19)	intron (NM_001359285, intron 1 of 19)	829.0	NM_153055	140740.0	Mm.214344	NM_153055	ENSMUSG00000019802	Sec63	5730478J10Rik|AI649014|AW319215	SEC63-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156681393-1	chr1	156680893	156681893	+	1000.0	f1_c57bl6.idr	3' UTR (NM_145413, exon 8 of 8)	3' UTR (NM_145413, exon 8 of 8)	-7054.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	63.0	91.5	65.0	108.5	261.5	196.0
Merged-chr7-126746275-4	chr7	126745763	126746763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-13363.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75185980-4	chr14	75185504	75186504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	49579.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98774869-1	chr11	98774369	98775369	+	1000.0	f0_c57.idr	5' UTR (NM_145434, exon 1 of 8)	5' UTR (NM_145434, exon 1 of 8)	508.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67933194-4	chr18	67932664	67933664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172631)	promoter-TSS (NM_172631)	-9.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.5	13.5	6.5	0.5	13.5	6.5
Merged-chr19-6058432-2	chr19	6057932	6058932	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026246)	promoter-TSS (NM_026246)	465.0	NM_001190436	14109.0	Mm.329631	NM_007990	ENSMUSG00000038274	Fau	MNSFbeta	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived)	protein-coding	74.5	269.5	168.0	94.5	232.5	210.0
Merged-chr5-25499114-4	chr5	25498634	25499634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081383)	promoter-TSS (NM_001081383)	-351.0	NM_001081383	231051.0	Mm.332268	NM_001081383	ENSMUSG00000038056	Kmt2c	E330008K23Rik|HALR|Mll3|mKIAA1506	lysine (K)-specific methyltransferase 2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23579206-2	chr13	23578706	23579706	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2396.0	NM_175654	319156.0	Mm.260530	NM_175654	ENSMUSG00000061482	Hist1h4d	-	histone cluster 1, H4d	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-141082356-2	chr5	141081856	141082856	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81760.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19318325-2	chr7	19317825	19318825	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8280.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90081666-5	chr3	90081135	90082135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357581, intron 1 of 8)	intron (NM_001357581, intron 1 of 8)	2114.0	NM_001293749	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	14.0	88.5	44.5	33.5	108.0	46.0
Merged-chr15-98934548-4	chr15	98934052	98935052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011654)	promoter-TSS (NM_011654)	-162.0	NM_011654	22143.0	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51531037-4	chr10	51530548	51531548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS3|LTR|ERV1	40150.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15657514-4	chr17	15657019	15658019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	25731.0	NR_045431	71008.0	Mm.399492	NR_045431		4933401D09Rik	-	RIKEN cDNA 4933401D09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102421668-2	chr15	102421168	102422168	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013672, intron 3 of 5)	intron (NM_013672, intron 3 of 5)	15352.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121377170-2	chr5	121376670	121377670	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359947, intron 6 of 11)	B2_Mm1t|SINE|B2	8239.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	1.0	6.5	1.0	0.0	6.5	1.0
Merged-chr2-45280532-4	chr2	45280033	45281033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-163091.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117076807-4	chr11	117076302	117077302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027059)	promoter-TSS (NR_027059)	19.0	NR_027059	76972.0	Mm.309167	NR_027059	ENSMUSG00000086859	Snhg20	2810008D09Rik	small nucleolar RNA host gene 20	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-144308474-4	chr1	144307993	144308993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59389.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43921294-4	chr7	43920794	43921794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12477.0	NM_174865	317652.0	Mm.389896	NM_174865	ENSMUSG00000055193	Klk15	-	kallikrein related-peptidase 15	protein-coding	35.5	36.5	31.5	29.0	40.0	30.0
Merged-chr9-61169214-2	chr9	61168714	61169714	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30699.0	NR_045705	619328.0	Mm.325722	NR_045705	ENSMUSG00000110998	I730028E13Rik	-	RIKEN cDNA I730028E13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144527518-4	chr2	144527021	144528021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029763)	promoter-TSS (NM_029763)	-107.0	NM_001360362	241688.0	Mm.442156	NM_172859	ENSMUSG00000037259	Dzank1	2810039F03Rik|6330439K17Rik|Ankrd64	double zinc ribbon and ankyrin repeat domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-44957386-4	chr2	44956907	44957907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65770.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155869521-4	chr4	155869017	155870017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028020)	promoter-TSS (NM_028020)	-50.0	NM_028020	71957.0	Mm.475640	NM_028020	ENSMUSG00000029034	Ints11	2410006F12Rik|AU044035|Cpsf3l	integrator complex subunit 11	protein-coding	10.0	29.5	28.0	14.5	18.0	47.0
Merged-chr2-26498383-4	chr2	26497882	26498882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 2 of 33)	intron (NM_008714, intron 2 of 33)	5440.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141372347-4	chr7	141371840	141372840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7230.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81407758-4	chr10	81407261	81408261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 5 of 8)	intron (NM_026756, intron 5 of 8)	-1814.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95300413-4	chr10	95299897	95300897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	ORR1E|LTR|ERVL-MaLR	23312.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51422737-4	chr10	51422237	51423237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-57875.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47611546-4	chr17	47611037	47612037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020048)	promoter-TSS (NM_020048)	-45.0	NM_016859	53414.0	Mm.472101	NM_016859	ENSMUSG00000023988	Bysl	Bys|Enp1	bystin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22475710-4	chr9	22475219	22476219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181316)	promoter-TSS (NM_181316)	4.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148495368-4	chr5	148494869	148495869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56304.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	50.0	79.5	83.5	37.0	67.5	55.5
Merged-chr2-90679282-4	chr2	90678816	90679816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021512, exon 2 of 37)	5' UTR (NM_021512, exon 2 of 37)	2101.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100925200-4	chr12	100924700	100925700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026681, intron 25 of 29)	intron (NM_026681, intron 25 of 29)	-17002.0	NM_001177673	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91043990-4	chr16	91043505	91044505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152264, intron 1 of 17)	CpG	374.0	NM_026110	67367.0	Mm.347	NM_026110	ENSMUSG00000022974	Paxbp1	1810007M14Rik|C21orf66|Gcfc|Gcfc1|Pax3/7bp	PAX3 and PAX7 binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113641646-2	chr5	113641146	113642146	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359060, intron 2 of 4)	intron (NM_001359060, intron 2 of 4)	1957.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99141287-4	chr7	99140789	99141789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178635)	promoter-TSS (NM_178635)	-145.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0.0	12.0	1.5	1.0	3.0	5.5
Merged-chr5-96792602-4	chr5	96792113	96793113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013470)	promoter-TSS (NM_013470)	-772.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	6.5	25.5	17.0	12.0	15.5	24.5
Merged-chr14-45388847-4	chr14	45388341	45389341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019425)	promoter-TSS (NM_019425)	-45.0	NM_019425	54342.0	Mm.312945	NM_019425	ENSMUSG00000037722	Gnpnat1	AU017428|AU040593|EMeg32|Gpnat1|Gsnpat	glucosamine-phosphate N-acetyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44118223-4	chr16	44117719	44118719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	21040.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113242373-4	chr13	113241921	113242921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32762.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84074451-2	chr15	84073951	84074951	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9102.0	NM_029946	77627.0	Mm.196288	NM_029946	ENSMUSG00000022441	Efcab6	4931407K02Rik|4932408N08Rik|bM150J22.2|mKIAA1672	EF-hand calcium binding domain 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80577640-7	chr10	80577157	80578157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_078477)	promoter-TSS (NM_078477)	-361.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64029930-4	chr5	64029429	64030429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15044.0	NR_045384	74757.0	Mm.159329	NR_045384	ENSMUSG00000106219	5830416I19Rik	-	RIKEN cDNA 5830416I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139599108-4	chr4	139598584	139599584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	-23810.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	124.0	210.5	178.5	40.5	132.0	104.5
Merged-chr16-91464070-4	chr16	91463579	91464579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1025.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	118.5	238.0	160.0	87.5	226.0	143.5
Merged-chr8-46931401-4	chr8	46930906	46931906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME3G|LINE|L1	-55481.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80102636-4	chr10	80102109	80103109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183426)	promoter-TSS (NM_183426)	93.0	NM_183426	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102574427-4	chr4	102573929	102574929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	4369.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	48.0	113.5	58.0	43.5	112.0	96.5
Merged-chr19-45047671-4	chr19	45047198	45048198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_155547, exon 1 of 11)	non-coding (NR_155547, exon 1 of 11)	122.0	NM_001362381	94280.0	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34033092-4	chr17	34032594	34033594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205214, intron 2 of 9)	intron (NM_001205214, intron 2 of 9)	744.0	NM_001205215	20182.0	Mm.1243	NM_011306	ENSMUSG00000039656	Rxrb	AL023085|H-2RIIBP|Nr2b2|RCoR-1|Rub	retinoid X receptor beta	protein-coding	33.0	44.0	21.0	21.0	32.5	19.5
Merged-chr12-111669385-4	chr12	111668940	111669940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_021273)	TTS (NM_021273)	2898.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16102681-2	chr7	16102181	16103181	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025898, intron 1 of 10)	intron (NM_025898, intron 1 of 10)	4101.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	3.0	14.0	2.0	3.0	9.5	2.0
Merged-chr2-32236562-4	chr2	32236045	32237045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145145)	promoter-TSS (NM_145145)	-138.0	NM_145145	99011.0	Mm.31192	NM_145145	ENSMUSG00000039254	Pomt1	AI505244	protein-O-mannosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80032975-4	chr7	80032469	80033469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	6741.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	89.5	154.0	124.5	97.5	159.0	131.5
Merged-chr19-4182043-4	chr19	4181555	4182555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6576.0	NM_134148	107239.0	Mm.482310	NM_134148	ENSMUSG00000075289	Carns1	AI790298|Atpgd1|mKIAA1394	carnosine synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3295861-4	chr7	3295356	3296356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001093766, intron 1 of 1)	intron (NM_001093766, intron 1 of 1)	2828.0	NM_001093766	50918.0	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	43.0	114.5	50.5	13.5	32.0	27.0
Merged-chr14-72604321-4	chr14	72603813	72604813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 3 of 25)	intron (NM_207636, intron 3 of 25)	105690.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137116233-4	chr5	137115744	137116744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201373)	promoter-TSS (NM_201373)	-37.0	NM_201373	384309.0	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119488457-4	chr13	119487964	119488964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027974)	promoter-TSS (NR_027974)	-80.0	NR_027974	67304.0	Mm.474382	NM_026084	ENSMUSG00000074635	3110070M22Rik	-	RIKEN cDNA 3110070M22 gene	ncRNA	8.0	22.0	5.0	16.0	8.0	15.5
Merged-chr5-21786727-4	chr5	21786229	21787229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011188, exon 2 of 13)	exon (NM_011188, exon 2 of 13)	1446.0	NM_011188	19181.0	Mm.2462	NM_011188	ENSMUSG00000028932	Psmc2	-	proteasome (prosome, macropain) 26S subunit, ATPase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-181210696-4	chr1	181210217	181211217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145514, intron 1 of 13)	intron (NM_145514, intron 1 of 13)	1261.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71464802-4	chr8	71464312	71465312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053162)	promoter-TSS (NM_053162)	-114.0	NM_053162	94065.0	Mm.29489	NM_053162	ENSMUSG00000034880	Mrpl34	0610007O17Rik|D8Bwg1484e	mitochondrial ribosomal protein L34	protein-coding	14.5	38.5	26.0	5.0	27.0	31.0
Merged-chr1-165667104-4	chr1	165666599	165667599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	-32558.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135471924-4	chr5	135471428	135472428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	73194.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-126612948-4	chr3	126612467	126613467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	Lx5c|LINE|L1	16016.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	24.0	75.5	58.0	23.0	71.5	30.0
Merged-chr18-82717512-4	chr18	82717009	82718009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2772.0	NR_039572	100628586.0		NR_039572	ENSMUSG00000092638	Mir5112	mmu-mir-5112|mu-mir-5112	microRNA 5112	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-128102759-4	chr1	128102246	128103246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027678)	promoter-TSS (NM_027678)	255.0	NM_001357573	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	38.5	93.5	54.5	24.0	64.5	30.0
Merged-chr15-7931791-1	chr15	7931291	7932291	+	1000.0	f0_balb.idr	intron (NM_001081402, intron 10 of 17)	intron (NM_001081402, intron 10 of 17)	116241.0	NM_001301357	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-104860152-3	chr5	104859639	104860639	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039231)	promoter-TSS (NM_001039231)	-71.0	NM_001039231	626391.0	Mm.385405	NM_001039231	ENSMUSG00000072774	Zfp951	C230055K05Rik|Gm38611	zinc finger protein 951	protein-coding	10.0	39.0	19.5	0.0	2.5	5.5
Merged-chr17-28013424-4	chr17	28012919	28013919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 12 of 24)	intron (NM_181413, intron 12 of 24)	67165.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	8.5	10.0	5.0	2.5	3.5	4.5
Merged-chr1-171283467-4	chr1	171282983	171283983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013919, intron 8 of 12)	intron (NM_013919, intron 8 of 12)	-2297.0	NM_008911	19044.0	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	25.5	68.0	62.0	31.5	81.0	43.0
Merged-chr5-24445238-4	chr5	24444716	24445716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023229)	promoter-TSS (NM_023229)	19.0	NM_023229	66587.0	Mm.28123	NM_023229	ENSMUSG00000028959	Fastk	0610011K02Rik|610011K02Rik	Fas-activated serine/threonine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151345257-4	chr1	151344755	151345755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039511, intron 1 of 7)	CpG	757.0	NM_001039511	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-104028268-2	chr2	104027768	104028768	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175161)	promoter-TSS (NM_175161)	93.0	NM_175161	70986.0	Mm.460738	NM_175161		4931422A03Rik	-	RIKEN cDNA 4931422A03 gene	protein-coding	10.0	35.5	30.0	11.0	25.5	23.5
Merged-chr6-114842727-2	chr6	114842227	114843227	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	79094.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96537041-4	chr9	96536542	96537542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-58367.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25579121-4	chr17	25578639	25579639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029624)	promoter-TSS (NM_029624)	-35.0	NM_029624	76483.0	Mm.12787	NM_029624	ENSMUSG00000002279	Lmf1	2400010G15Rik|AW822050|Tmem112|cld	lipase maturation factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45181916-4	chr9	45181421	45182421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145403, intron 5 of 12)	intron (NM_145403, intron 5 of 12)	-13845.0	NM_001198971	408059.0	Mm.249297	NM_001198971	ENSMUSG00000091996	BC049352	SMIM35	cDNA sequence BC049352	protein-coding	36.0	69.0	25.0	58.5	84.0	39.5
Merged-chr7-45009071-2	chr7	45008571	45009571	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008422, intron 6 of 10)	intron (NM_001008422, intron 6 of 10)	3416.0	NR_106021	102466218.0		NR_106021	ENSMUSG00000098839	Mir7054	Gm27557|mmu-mir-7054	microRNA 7054	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110967847-4	chr11	110967343	110968343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252207)	promoter-TSS (NM_001252207)	-190.0	NM_010604	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	73.0	153.0	141.5	101.0	180.0	136.0
Merged-chr2-37703420-4	chr2	37702931	37703931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-15147.0	NR_039590	100628597.0		NR_039590	ENSMUSG00000092958	Mir5128	mir-5128|mmu-mir-5128|mu-mir-5128	microRNA 5128	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-35937422-2	chr15	35936922	35937922	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053071, intron 1 of 3)	intron (NM_053071, intron 1 of 3)	824.0	NM_053071	12864.0	Mm.548	NM_053071	ENSMUSG00000014313	Cox6c	-	cytochrome c oxidase subunit VIc	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44305304-4	chr7	44304798	44305798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009131, intron 3 of 3)	intron (NM_009131, intron 3 of 3)	1661.0	NM_009131	20256.0	Mm.20428	NM_009131	ENSMUSG00000004473	Clec11a	AW457320|Clecsf3|Scgf	C-type lectin domain family 11, member a	protein-coding	0.0	4.5	7.5	0.0	2.0	0.5
Merged-chr6-149141522-4	chr6	149141039	149142039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177101)	promoter-TSS (NM_177101)	26.0	NM_001252095	320204.0	Mm.274099	NM_177101	ENSMUSG00000039958	Etfbkmt	4833442J19Rik|AI256744|ETFB-KMT|Mettl20	electron transfer flavoprotein beta subunit lysine methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164443223-4	chr2	164442705	164443705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011521)	promoter-TSS (NM_011521)	-17.0	NM_011521	20971.0	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-57801540-4	chr11	57801039	57802039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131042)	promoter-TSS (NR_131042)	-72.0	NR_131042	76516.0	Mm.28485	NR_131042	ENSMUSG00000087165	2010001A14Rik	-	RIKEN cDNA 2010001A14 gene	ncRNA	25.0	28.5	18.0	21.0	9.0	7.0
Merged-chr8-125845452-4	chr8	125844944	125845944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175561, intron 15 of 33)	intron (NM_175561, intron 15 of 33)	-52470.0	NR_155422	102632990.0	Mm.429446	NR_155422		A730098A19Rik	-	RIKEN cDNA A730098A19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25366907-4	chr10	25366407	25367407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 1 of 16)	intron (NM_001358754, intron 1 of 16)	7109.0	NM_001358751	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21022033-4	chr9	21021519	21022519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010493, intron 2 of 6)	intron (NM_010493, intron 2 of 6)	6079.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58402393-7	chr13	58401889	58402889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301343)	promoter-TSS (NM_001301343)	123.0	NR_153504	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100646408-1	chr11	100645908	100646908	+	1000.0	f1_balb.idr	intron (NM_177790, intron 1 of 7)	intron (NM_177790, intron 1 of 7)	4285.0	NM_177790	278304.0	Mm.274734	NM_177790	ENSMUSG00000014198	Zfp385c	A930006D11Rik|Znf385c	zinc finger protein 385C	protein-coding	2.5	0.0	2.5	0.0	0.0	0.0
Merged-chr6-108503837-4	chr6	108503320	108504320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 53 of 61)	L1ME1|LINE|L1	14077.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	16.5	73.0	59.0	44.5	94.0	76.0
Merged-chr13-6548140-4	chr13	6547654	6548654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145131)	promoter-TSS (NM_145131)	-3.0	NM_145131	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86745758-4	chr11	86745254	86746254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	11813.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16323165-4	chr19	16322656	16323656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 3 of 6)	intron (NM_008139, intron 3 of 6)	-8152.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0.0	5.0	0.0	0.5	5.0	0.0
Merged-chr7-104446146-4	chr7	104445649	104446649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357467)	promoter-TSS (NM_001357467)	-24.0	NM_001357467	20128.0	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	16.0	44.5	41.5	16.0	41.0	37.5
Merged-chr11-8630028-4	chr11	8629543	8630543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	34492.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108999281-4	chr9	108998795	108999795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 3 of 13)	intron (NR_153430, intron 3 of 13)	7393.0	NR_153430	270198.0	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116624857-2	chr11	116624347	116625347	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167680)	promoter-TSS (NM_001167680)	-595.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	6.0	17.5	22.0	25.0	3.0	18.5
Merged-chr6-35538917-2	chr6	35538417	35539417	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008098, intron 1 of 3)	intron (NM_008098, intron 1 of 3)	971.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29009380-4	chr17	29008858	29009858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1363.0	NM_001357173	106504.0	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	3.0	7.5	10.5	7.5	24.5	15.5
Merged-chr12-41350031-4	chr12	41349539	41350539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	136018.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-72085668-4	chr12	72085165	72086165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205067)	promoter-TSS (NM_001205067)	-174.0	NM_001205067	104771.0	Mm.258935	NM_024205	ENSMUSG00000005078	Jkamp	1200003C05Rik|2310047L11Rik|Jamp	JNK1/MAPK8-associated membrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75089736-4	chr8	75089237	75090237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3881.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	32.5	101.0	77.5	73.5	81.0	58.5
Merged-chr11-46795817-4	chr11	46795307	46796307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14992.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	0.0	2.0	5.0	2.0	3.5	0.5
Merged-chr12-40223978-4	chr12	40223479	40224479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013562)	promoter-TSS (NM_013562)	615.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-92581168-2	chr13	92580668	92581668	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4936.0	NM_030237	79401.0	Mm.23520	NM_030237	ENSMUSG00000046957	Spz1	1700027M20Rik|AI429130	spermatogenic leucine zipper 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3144145-3	chr11	3143603	3144603	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 18 of 32)	intron (NM_030207, intron 18 of 32)	20082.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74832297-4	chr11	74831798	74832798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010813, intron 1 of 5)	CpG-2219	1374.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	39.0	98.0	66.0	71.0	131.0	75.5
Merged-chr11-120790381-2	chr11	120789881	120790881	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026824, intron 11 of 13)	B1F|SINE|Alu	5866.0	NM_145370	209318.0	Mm.30195	NM_145370	ENSMUSG00000025156	Gps1	Cops1|Csn1|R75577|Sgn1	G protein pathway suppressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60362337-4	chr10	60361829	60362829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028732, intron 3 of 6)	intron (NM_028732, intron 3 of 6)	15478.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-129584027-4	chr5	129583537	129584537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011846)	promoter-TSS (NM_011846)	-132.0	NM_011846	23948.0	Mm.42047	NM_011846	ENSMUSG00000029436	Mmp17	MT4-MMP|MT4MMP|MTMMP4	matrix metallopeptidase 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11008404-4	chr16	11007897	11008897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040518)	promoter-TSS (NR_040518)	-501.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135631661-4	chr1	135631139	135632139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33863.0	NR_151586	215714.0	Mm.472859	NM_175447		Gm4793	EG215714	predicted gene 4793	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149696889-4	chr4	149696376	149697376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029837, intron 1 of 23)	intron (NM_001029837, intron 1 of 23)	1832.0	NM_001164050	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	32.0	90.5	52.0	25.5	71.0	35.0
Merged-chr10-84556360-4	chr10	84555855	84556855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3017.0	NR_040658	442847.0	Mm.128292	NR_040658	ENSMUSG00000097076	Platr7	C330046G13Rik	pluripotency associated transcript 7	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-77923679-4	chr14	77923168	77924168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029495, intron 1 of 11)	intron (NM_029495, intron 1 of 11)	19429.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10971640-2	chr16	10971140	10972140	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	URR1B|DNA|hAT-Charlie	21481.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-13557503-8	chr2	13557002	13558002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12838.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-58503227-4	chr4	58502719	58503719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172989, intron 2 of 3)	ORR1D2|LTR|ERVL-MaLR	-3816.0	NM_001290486	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-66793614-4	chr4	66793105	66794105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-33946.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0.0	0.0	0.0	0.0	0.5	1.5
Merged-chr14-25841950-6	chr14	25841437	25842437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013469)	promoter-TSS (NM_013469)	-218.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117405635-4	chr2	117405126	117406126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEd|LINE|L1	-62749.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	2.5	9.5	8.5	24.0	33.5	18.5
Merged-chr5-124328004-4	chr5	124327510	124328510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028310)	promoter-TSS (NM_028310)	-38.0	NM_001277867	269702.0	Mm.60224	NM_001081323	ENSMUSG00000038126	Mphosph9	4930548D04Rik|9630025B04Rik|AW413446|AW547060|B930097C17Rik|C87456|MPP-9|MPP9	M-phase phosphoprotein 9	protein-coding	2.0	10.5	11.5	0.0	11.0	8.0
Merged-chr5-21424807-4	chr5	21424311	21425311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029195)	promoter-TSS (NM_029195)	-92.0	NM_177869	330050.0	Mm.40655	NM_177869	ENSMUSG00000047221	Fam185a	4631428I10|AI847670	family with sequence similarity 185, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-123112943-4	chr10	123112442	123113442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027604, exon 22 of 22)	3' UTR (NM_027604, exon 22 of 22)	-36437.0	NM_001163025	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79698420-4	chr2	79697913	79698913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9367.0	NM_172420	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	6.0	18.0	3.5	9.0	4.5	12.0
Merged-chr14-118578089-4	chr14	118577585	118578585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163676, intron 18 of 29)	ORR1E|LTR|ERVL-MaLR	14387.0	NR_105815	102465208.0		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	1.0	0.0	0.0	2.0	5.5	0.0
Merged-chr3-60472903-6	chr3	60472320	60473320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253713)	promoter-TSS (NM_001253713)	-10.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	26.0	23.5	26.0	26.0	22.5	25.5
Merged-chr8-75083166-2	chr8	75082666	75083666	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10452.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96978350-2	chr11	96977850	96978850	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080964)	promoter-TSS (NM_001080964)	-662.0	NM_001080964	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-54564150-4	chr1	54563649	54564649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	-6465.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	158.5	295.5	280.5	153.5	383.5	281.0
Merged-chr6-99784991-4	chr6	99784474	99785474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-58582.0	NM_001037539	50501.0	Mm.87365	NM_015768	ENSMUSG00000030069	Prok2	Bv8|PK2|Prok1	prokineticin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171184513-4	chr1	171184017	171185017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025557, intron 1 of 2)	URR1B|DNA|hAT-Charlie	11751.0	NM_025557	66425.0	Mm.482117	NM_025557	ENSMUSG00000038370	Pcp4l1	1500036F01Rik	Purkinje cell protein 4-like 1	protein-coding	0.5	30.5	13.5	0.5	31.0	14.5
Merged-chr7-121469601-4	chr7	121469095	121470095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081327, intron 1 of 1)	G-rich|Low_complexity|Low_complexity	77299.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5159520-4	chr6	5159024	5160024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 15 of 15)	intron (NM_181595, intron 15 of 15)	34422.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132302257-2	chr7	132301757	132302757	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029935, intron 1 of 7)	intron (NM_029935, intron 1 of 7)	-13407.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97278573-4	chr6	97278077	97279077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-25797.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	8.0	5.0	10.0	3.5	5.0	4.0
Merged-chr10-81430682-10	chr10	81430119	81431119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3446.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11771921-4	chr2	11771420	11772420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348235, intron 1 of 20)	intron (NM_001348235, intron 1 of 20)	5665.0	NM_001348234	50755.0	Mm.24088	NM_015792	ENSMUSG00000058594	Fbxo18	AU015756|Fbh1|Fbx18	F-box protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53423939-2	chr19	53423439	53424439	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33305.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75512663-4	chr10	75512149	75513149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347201, intron 1 of 5)	intron (NM_001347201, intron 1 of 5)	4732.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-87407069-4	chr12	87406570	87407570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-18715.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	0.0	0.0	0.0	27.0	61.5	44.5
Merged-chr19-38022898-4	chr19	38022390	38023390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 2 of 53)	intron (NM_001302140, intron 2 of 53)	20687.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	85.0	236.0	175.0	125.0	183.0	133.0
Merged-chr14-46886126-4	chr14	46885613	46886613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	3148.0	NM_001037221	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	21.5	12.5	20.5	2.0	3.5	2.5
Merged-chr9-105121384-4	chr9	105120897	105121897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10408.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	13.5	24.0	44.0	42.0	72.0	77.5
Merged-chr17-56673242-4	chr17	56672733	56673733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027933)	promoter-TSS (NM_027933)	8.0	NM_027933	71810.0	Mm.29608	NM_027933	ENSMUSG00000002372	Ranbp3	2610024N24Rik|AA408221	RAN binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164833606-4	chr2	164833039	164834039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008906)	promoter-TSS (NM_008906)	57.0	NM_001082974	415115.0	Mm.474586	NM_001082974	ENSMUSG00000039873	Neurl2	Neur2|Ozz|Ozz-E3	neuralized E3 ubiquitin protein ligase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-108044452-4	chr13	108043944	108044944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001048250)	promoter-TSS (NM_001048250)	-30.0	NM_001048250	75616.0	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	18.0	67.5	36.0	20.5	71.0	31.0
Merged-chr3-19215896-4	chr3	19215389	19216389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356295, intron 5 of 7)	intron (NM_001356295, intron 5 of 7)	27594.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91494574-4	chr1	91494043	91495043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028718)	promoter-TSS (NM_028718)	-125.0	NM_028718	74019.0	Mm.318430	NM_028718	ENSMUSG00000034292	Traf3ip1	3930402D05Rik|AU041749|MIP-T3	TRAF3 interacting protein 1	protein-coding	0.5	0.0	6.0	1.5	2.5	2.5
Merged-chr19-21270076-2	chr19	21269576	21270576	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2202.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr5-139380566-4	chr5	139380064	139381064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030258)	promoter-TSS (NM_030258)	-75.0	NM_030258	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	23.5	46.5	33.5	20.5	65.0	36.5
Merged-chr11-75541151-4	chr11	75540667	75541667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 2 of 13)	intron (NM_001199284, intron 2 of 13)	9055.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119541947-4	chr4	119541436	119542436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357177)	promoter-TSS (NM_001357177)	-400.0	NM_001357177	230700.0	Mm.259227	NM_172699	ENSMUSG00000032998	Foxj3	C330039G02Rik|Fhd6	forkhead box J3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95291340-4	chr10	95290845	95291845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	32364.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3516826-4	chr8	3516310	3517310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359123)	promoter-TSS (NM_001359123)	-53.0	NM_001359124	50767.0	Mm.23085	NM_015801	ENSMUSG00000004565	Pnpla6	AI661849|MSws|Nte	patatin-like phospholipase domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8443719-4	chr15	8443198	8444198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201232, intron 1 of 45)	CpG	765.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35119255-4	chr7	35118745	35119745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287523)	promoter-TSS (NM_001287523)	-48.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	18.0	69.0	34.0	5.5	44.0	36.0
Merged-chr10-60704767-2	chr10	60704267	60705267	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-8277.0	NM_023370	22295.0	Mm.440327	NM_023370	ENSMUSG00000012819	Cdh23	4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v	cadherin 23 (otocadherin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108179490-4	chr12	108178964	108179964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028262)	promoter-TSS (NM_028262)	-180.0	NM_028262	52690.0	Mm.159185	NM_028262	ENSMUSG00000056770	Setd3	2610102I01Rik|2610305M23Rik|6030490B17Rik|D12Ertd771e	SET domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-108065625-4	chr5	108065053	108066053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253877)	promoter-TSS (NM_001253877)	-121.0	NM_001359088	17765.0	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	0.0	3.0	2.0	0.0	0.0	1.0
Merged-chr12-100626795-4	chr12	100626283	100627283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153587, intron 3 of 17)	L1M4b|LINE|L1	98337.0	NM_001330702	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-144242001-4	chr1	144241495	144242495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	7109.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70056334-4	chr14	70055899	70056899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-21046.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97487935-4	chr6	97487426	97488426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346637)	promoter-TSS (NM_001346637)	-106.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	64.5	221.5	123.5	64.5	139.0	116.0
Merged-chr9-51009775-2	chr9	51009275	51010275	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178710)	promoter-TSS (NM_178710)	-702.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70752527-4	chr8	70752011	70753011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2168.0	NM_001328047	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	97.0	183.0	111.0	76.0	209.0	136.5
Merged-chr15-78406686-4	chr15	78406236	78407236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162493)	promoter-TSS (NM_001162493)	24.0	NM_001162493	246221.0	Mm.294215	NM_138670	ENSMUSG00000071711	Mpst	Mst	mercaptopyruvate sulfurtransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128618743-4	chr4	128618258	128619258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_205823)	promoter-TSS (NM_205823)	-139.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45949306-4	chr4	45948793	45949793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198660, intron 36 of 37)	intron (NM_198660, intron 36 of 37)	-16042.0	NM_001290475	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	35.5	75.5	59.5	14.0	69.0	23.0
Merged-chr7-90216708-4	chr7	90216201	90217201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48731.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	6.5	9.0	4.5	0.0	0.0	1.0
Merged-chr8-120563049-2	chr8	120562549	120563549	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 3 of 15)	intron (NM_001145896, intron 3 of 15)	24353.0	NR_106159	102466849.0		NR_106159	ENSMUSG00000098280	Mir7687	Gm27573|mmu-mir-7687	microRNA 7687	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116143972-2	chr11	116143472	116144472	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172571, intron 30 of 30)	intron (NM_172571, intron 30 of 30)	-5104.0	NM_024177	60441.0	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	5.0	44.5	5.0	5.0	24.0	3.5
Merged-chr11-3539333-4	chr11	3538855	3539855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284429)	promoter-TSS (NM_001284429)	-63.0	NM_001284428	29856.0	Mm.188516	NM_013870	ENSMUSG00000020439	Smtn	smsmo	smoothelin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20092536-4	chr13	20092042	20093042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	2035.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-7980836-4	chr5	7980341	7981341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_054098, exon 5 of 5)	3' UTR (NM_054098, exon 5 of 5)	20369.0	NM_054098	117167.0	Mm.31403	NM_054098	ENSMUSG00000012428	Steap4	1110021O17Rik|AI481214|Tiarp|Tnfaip9	STEAP family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-127270647-5	chr1	127270135	127271135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 2 of 17)	C-rich|Low_complexity|Low_complexity	65649.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34293726-4	chr17	34293188	34294188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5917.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	61.5	115.5	76.5	74.5	135.5	67.0
Merged-chr1-177797673-2	chr1	177797173	177798173	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-1164.0	NM_007422	11566.0	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73061138-4	chr15	73060634	73061634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_180662)	promoter-TSS (NM_180662)	70.0	NM_001164641	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	4.5	10.0	9.0	0.0	2.5	3.0
Merged-chr2-79056285-4	chr2	79055784	79056784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	186606.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4282158-2	chr19	4281658	4282658	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026720, intron 2 of 14)	intron (NM_026720, intron 2 of 14)	979.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112866675-4	chr12	112866171	112867171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5755.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171114074-4	chr1	171113587	171114587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7574.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8974004-4	chr12	8973581	8974581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159527)	promoter-TSS (NM_001159527)	80.0	NM_172470	74682.0	Mm.87389	NM_172470	ENSMUSG00000066643	Wdr35	4930459M12Rik|4931430C06|mKIAA1336	WD repeat domain 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57770635-4	chr6	57770124	57771124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 3 of 4)	intron (NM_146168, intron 3 of 4)	54501.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24450641-2	chr7	24450141	24451141	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4959.0	NM_199013	210145.0	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155490032-2	chr4	155489532	155490532	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1329.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89407505-2	chr15	89407005	89408005	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162880, intron 1 of 2)	ORR1C2-int|LTR|ERVL-MaLR	2758.0	NM_001162882	75459.0	Mm.45462	NM_001162880	ENSMUSG00000078938	Syce3	1700007E06Rik|TSEG-2|TSEG2	synaptonemal complex central element protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38902319-4	chr16	38901841	38902841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170599)	promoter-TSS (NM_170599)	-4.0	NM_170599	207683.0	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding	0.0	4.5	7.0	4.0	3.5	0.0
Merged-chr8-70538856-4	chr8	70538351	70539351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007924)	promoter-TSS (NM_007924)	-824.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	47.5	152.5	65.5	29.5	132.5	72.0
Merged-chr9-116083734-4	chr9	116083231	116084231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91632.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	103.0	188.5	158.5	80.5	188.0	151.0
Merged-chr9-106203142-4	chr9	106202634	106203634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011876)	promoter-TSS (NM_011876)	26.0	NM_011876	23999.0	Mm.274346	NM_011876	ENSMUSG00000023277	Twf2	A6-related|AU014993|Ptk9l|Ptk9r	twinfilin actin binding protein 2	protein-coding	36.5	36.0	44.0	21.5	47.5	38.0
Merged-chr11-59542579-4	chr11	59542063	59543063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145827)	promoter-TSS (NM_145827)	-123.0	NM_145827	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20112446-4	chr11	20111958	20112958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146243, intron 1 of 8)	CpG	493.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	46.0	133.5	102.0	57.0	133.0	95.0
Merged-chr3-21988304-4	chr3	21987717	21988717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88435.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-22077443-4	chr3	22076936	22077936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	784.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104281148-4	chr9	104280644	104281644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18214.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-51704141-4	chr12	51703655	51704655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001329698, intron 1 of 5)	intron (NM_001329698, intron 1 of 5)	-12241.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	0.0	2.0	3.0	0.0	0.0	5.5
Merged-chr11-80154031-4	chr11	80153541	80154541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172133)	promoter-TSS (NM_172133)	-121.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36287612-4	chr18	36287102	36288102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008989, exon 2 of 2)	exon (NM_008989, exon 2 of 2)	6440.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46045207-4	chr19	46044679	46045679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001113408, exon 1 of 11)	5' UTR (NM_001113408, exon 1 of 11)	132.0	NM_001113408	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	30.0	52.0	65.5	22.5	46.5	37.0
Merged-chr2-102752025-4	chr2	102751516	102752516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077514, intron 6 of 10)	intron (NM_001077514, intron 6 of 10)	-5256.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69401207-4	chr12	69400703	69401703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29053.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	50.5	96.5	74.5	76.0	121.5	102.5
Merged-chr7-100159249-2	chr7	100158756	100159756	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_026010)	promoter-TSS (NM_026010)	-21.0	NM_026010	67164.0	Mm.46777	NM_026010	ENSMUSG00000030725	Lipt2	2610209A20Rik	lipoyl(octanoyl) transferase 2 (putative)	protein-coding	5.0	6.0	3.0	5.0	6.5	2.0
Merged-chr19-10240792-4	chr19	10240318	10241318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033481)	promoter-TSS (NM_001033481)	-70.0	NM_001033481	225908.0	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-83074418-4	chr13	83073918	83074918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-376085.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	8.5	18.0	18.5	15.5	18.0	18.0
Merged-chr11-118157396-2	chr11	118156896	118157896	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28177.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-22916880-4	chr19	22916381	22917381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035239, intron 19 of 24)	intron (NM_001035239, intron 19 of 24)	166276.0	NR_029591	387200.0		NR_029591	ENSMUSG00000065507	Mir204	Mirn204|mir-204|mmu-mir-204	microRNA 204	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57923084-4	chr15	57922581	57923581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001167679, exon 4 of 18)	exon (NM_001167679, exon 4 of 18)	10882.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191062957-4	chr1	191062474	191063474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163421)	promoter-TSS (NM_001163421)	-42.0	NM_026895	68972.0	Mm.237188	NM_026895	ENSMUSG00000026632	Tatdn3	1500010M24Rik	TatD DNase domain containing 3	protein-coding	1.5	0.0	2.0	1.5	0.0	4.5
Merged-chr2-93214402-4	chr2	93213890	93214890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183180, intron 5 of 9)	intron (NM_183180, intron 5 of 9)	26842.0	NM_001025246	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86800949-4	chr12	86800446	86801446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66577.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17146899-4	chr16	17146394	17147394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026940)	promoter-TSS (NM_026940)	-73.0	NM_026940	69101.0	Mm.101656	NM_026940	ENSMUSG00000041774	Ydjc	1810015A11Rik|4930521M19Rik	YdjC homolog (bacterial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4659088-4	chr7	4658573	4659573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172894)	promoter-TSS (NM_172894)	-123.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112617395-4	chr12	112616911	112617911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2636.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-61605709-4	chr3	61605216	61606216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	241209.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-143918559-4	chr1	143918073	143919073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85576.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-48080830-4	chr3	48080308	48081308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54049.0	NR_040408	666202.0	Mm.465057	NR_040408	ENSMUSG00000103257	Gm7977	EG666202	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide pseudogene	pseudo	1.5	13.0	19.5	15.0	6.5	12.5
Merged-chr1-180296221-4	chr1	180295709	180296709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-34267.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25994182-4	chr8	25993783	25994783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029037)	promoter-TSS (NM_029037)	-162.0	NM_029037	74653.0	Mm.17631	NM_029037	ENSMUSG00000037251	Pomk	4930444A02Rik|Sgk196	protein-O-mannose kinase	protein-coding	52.5	195.5	127.0	46.5	180.0	121.5
Merged-chr3-69005935-4	chr3	69005430	69006430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356976, intron 1 of 23)	CpG	1192.0	NM_133786	70099.0	Mm.206841	NM_133786	ENSMUSG00000034349	Smc4	2500002A22Rik|C79747|SMC-4|Smc4l1	structural maintenance of chromosomes 4	protein-coding	2.5	23.5	3.0	7.5	11.5	26.5
Merged-chr7-28436489-4	chr7	28436007	28437007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022024)	promoter-TSS (NM_022024)	-316.0	NM_175021	233033.0	Mm.54120	NM_175021	ENSMUSG00000109336	Samd4b	BC042901	sterile alpha motif domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31410222-4	chr15	31409701	31410701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42442.0	NM_027496	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-35754562-4	chr3	35754063	35755063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151627, intron 1 of 31)	CpG	500.0	NM_029570	76295.0	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18672335-4	chr2	18671823	18672823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_147778)	promoter-TSS (NM_147778)	-139.0	NM_147778	12238.0	Mm.249586	NM_147778	ENSMUSG00000051154	Commd3	AW550818|Bup|D2Ertd542e	COMM domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65454379-2	chr9	65453879	65454879	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6558.0	NM_138584	27965.0	Mm.272475	NM_138584	ENSMUSG00000032388	Spg21	ACP33|BM-019|C78576|D9Wsu18e|GL010|MAST	SPG21, maspardin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29512215-7	chr19	29511704	29512704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015567, intron 2 of 3)	(GGGAGA)n|Simple_repeat|Simple_repeat	9783.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31220372-4	chr6	31219863	31220863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040257)	promoter-TSS (NR_040257)	12.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116004910-4	chr6	116004415	116005415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9910.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23762862-4	chr11	23762372	23763372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009044, intron 1 of 9)	intron (NM_009044, intron 1 of 9)	8098.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58415466-4	chr15	58414954	58415954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145959)	promoter-TSS (NM_145959)	-14.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	0.5	4.5	3.5	2.0	0.0	0.0
Merged-chr18-32375615-4	chr18	32375112	32376112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045403, intron 1 of 2)	intron (NR_045403, intron 1 of 2)	-1605.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	30.0	116.5	83.5	22.5	75.5	43.5
Merged-chr17-37203768-4	chr17	37203265	37204265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5799.0	NM_001011518	258219.0	Mm.377382	NM_001011518	ENSMUSG00000043827	Olfr94	MOR256-32P	olfactory receptor 94	protein-coding	0.0	1.0	3.5	1.0	6.0	5.0
Merged-chr4-149702844-5	chr4	149702276	149703276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1147.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	75.0	204.5	158.0	69.5	179.0	134.5
Merged-chr8-126495992-2	chr8	126495492	126496492	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-20927.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120982380-4	chr7	120981883	120982883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007672)	promoter-TSS (NM_007672)	-71.0	NM_001354986	12585.0	Mm.1640	NM_007672	ENSMUSG00000030878	Cdr2	AA617262	cerebellar degeneration-related 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11535585-4	chr2	11535071	11536071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	CpG	18358.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-100921649-2	chr3	100921149	100922149	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165953)	promoter-TSS (NM_001165953)	-844.0	NM_001165952	229644.0	Mm.189351	NM_194343	ENSMUSG00000033233	Trim45	4921530N01Rik	tripartite motif-containing 45	protein-coding	33.0	39.5	37.5	30.0	54.0	39.5
Merged-chr1-33670431-4	chr1	33669934	33670934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008922)	promoter-TSS (NM_008922)	610.0	NR_033199	67503.0	Mm.87069	NM_026204	ENSMUSG00000103746	1700001G17Rik	-	RIKEN cDNA 1700001G17 gene	ncRNA	8.5	44.5	26.5	7.5	43.5	22.0
Merged-chr4-26346847-4	chr4	26346336	26347336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172865)	promoter-TSS (NM_172865)	-184.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21291358-4	chr9	21290856	21291856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009878)	promoter-TSS (NM_009878)	-147.0	NM_009878	12581.0	Mm.29020	NM_009878	ENSMUSG00000096472	Cdkn2d	INK4d|p19|p19INK4d	cyclin dependent kinase inhibitor 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12370116-4	chr13	12369624	12370624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25251.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-112760846-4	chr6	112760340	112761340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080448, intron 10 of 21)	intron (NM_080448, intron 10 of 21)	-64170.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-46795818-4	chr7	46795382	46796382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291075)	promoter-TSS (NM_001291075)	-1.0	NM_001005247	246694.0	Mm.379442	NM_178742	ENSMUSG00000014418	Hps5	AI646796|AL022647|C85120|haze|hz|maroon|mr|ru-2|ru2	HPS5, biogenesis of lysosomal organelles complex 2 subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128412329-2	chr10	128411829	128412829	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026259, intron 1 of 7)	intron (NM_026259, intron 1 of 7)	713.0	NM_026259	67588.0	Mm.294120	NM_026259	ENSMUSG00000025373	Rnf41	2210404G21Rik|4930511A05Rik|4933415P08Rik|D10Ertd722e|FLRF|Nrdp1	ring finger protein 41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120470884-4	chr6	120470414	120471414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 1 of 12)	intron (NM_008359, intron 1 of 12)	7717.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0.5	5.5	5.0	0.0	5.0	4.5
Merged-chr11-74831388-4	chr11	74830903	74831903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010813, intron 1 of 5)	CpG-2219	479.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90214763-2	chr9	90214263	90215263	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 10 of 12)	intron (NM_194334, intron 10 of 12)	51785.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-59230584-4	chr7	59230066	59231066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033962, intron 1 of 10)	intron (NM_001033962, intron 1 of 10)	1816.0	NM_173010	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-37654466-4	chr16	37653958	37654958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026610)	promoter-TSS (NM_026610)	-90.0	NM_026610	68194.0	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72225293-4	chr5	72224811	72225811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 1 of 22)	intron (NR_003966, intron 1 of 22)	21968.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95309730-4	chr11	95309222	95310222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155298)	promoter-TSS (NR_155298)	524.0	NM_001195004	217127.0	Mm.90213	NM_177619	ENSMUSG00000038909	Kat7	Hbo1|Hboa|Myst2	K(lysine) acetyltransferase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43866779-4	chr5	43866247	43867247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2062.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	209.0	451.0	262.0	216.0	418.5	272.5
Merged-chr6-114644732-4	chr6	114644223	114645223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028835, intron 1 of 18)	intron (NM_028835, intron 1 of 18)	1626.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143626431-2	chr7	143625931	143626931	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175649, intron 1 of 7)	intron (NM_175649, intron 1 of 7)	1414.0	NM_175649	244237.0	Mm.247498	NM_175649	ENSMUSG00000045362	Tnfrsf26	Tnfrh3|Tnfrsf24	tumor necrosis factor receptor superfamily, member 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-17756988-4	chr14	17756470	17757470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 1 of 9)	intron (NM_001113417, intron 1 of 9)	96010.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-10457210-4	chr10	10456711	10457711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	15103.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	90.5	256.5	195.5	87.5	233.5	190.0
Merged-chr17-26531757-4	chr17	26531229	26532229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23257.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	23.5	31.5	28.5	20.5	16.0	23.5
Merged-chr8-34147171-4	chr8	34146631	34147631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026609)	promoter-TSS (NM_026609)	-392.0	NM_026609	68192.0	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	25.5	115.0	84.0	57.0	134.5	98.0
Merged-chr11-82035455-4	chr11	82034973	82035973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011333)	promoter-TSS (NM_011333)	-104.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-19973654-4	chr16	19973140	19974140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183390, intron 1 of 6)	intron (NM_183390, intron 1 of 6)	9409.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79097687-4	chr10	79097180	79098180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359717)	promoter-TSS (NM_001359717)	-80.0	NM_001004362	72128.0	Mm.297854	NM_001004362	ENSMUSG00000060301	2610008E11Rik	-	RIKEN cDNA 2610008E11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19468505-4	chr7	19468006	19469006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10012.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	42.5	64.5	88.0	42.0	68.5	87.5
Merged-chr1-183350041-4	chr1	183349552	183350552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177389, intron 6 of 26)	intron (NM_177389, intron 6 of 26)	19513.0	NM_177389	338366.0	Mm.41152	NM_177389		Mia3	9130229H14Rik|A930039G15Rik|AU022327|B230399H06Rik|C80126|Gm1525|TANGO1|Tango	melanoma inhibitory activity 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44335152-4	chr9	44334652	44335652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010436, exon 1 of 1)	exon (NM_010436, exon 1 of 1)	437.0	NM_010436	15270.0	Mm.245931	NM_010436	ENSMUSG00000049932	H2afx	AW228881|H2A.X|H2ax|Hist5-2ax|gammaH2ax	H2A histone family, member X	protein-coding	5.5	11.0	4.5	9.0	7.5	11.0
Merged-chr10-127286730-2	chr10	127286230	127287230	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347171, intron 5 of 12)	intron (NM_001347171, intron 5 of 12)	2288.0	NM_001347171	110962.0	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	0.0	0.0	0.5	0.0	2.5	0.0
Merged-chr2-30676766-2	chr2	30676266	30677266	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_136917, intron 1 of 3)	intron (NR_136917, intron 1 of 3)	1245.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-117242254-4	chr13	117241757	117242757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010330, intron 2 of 8)	intron (NM_010330, intron 2 of 8)	21684.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19078292-4	chr10	19077803	19078803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62893.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	20.5	21.5	28.5	43.0	71.5	50.5
Merged-chr7-80294335-4	chr7	80293844	80294844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285998)	promoter-TSS (NM_001285998)	-107.0	NM_145150	233406.0	Mm.227274	NM_145150	ENSMUSG00000038943	Prc1	D7Ertd348e	protein regulator of cytokinesis 1	protein-coding	13.5	25.0	27.0	16.0	35.5	28.0
Merged-chr11-75461465-4	chr11	75460986	75461986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030711)	promoter-TSS (NR_030711)	-53.0	NR_030711	100042498.0	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59439276-2	chr2	59438776	59439776	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45377.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25120609-4	chr7	25120099	25121099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163555, intron 4 of 13)	intron (NM_001163555, intron 4 of 13)	11861.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119227673-4	chr11	119227167	119228167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175430)	promoter-TSS (NM_175430)	832.0	NM_001347625	207592.0	Mm.205263	NM_172443	ENSMUSG00000039976	Tbc1d16	B930087K01|BC026530|Tcd1d16	TBC1 domain family, member 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122924318-4	chr3	122923829	122924829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046036)	promoter-TSS (NR_046036)	-68.0	NM_024461	67704.0	Mm.24219	NM_024461	ENSMUSG00000054091	1810037I17Rik	5730414I01Rik|Aln	RIKEN cDNA 1810037I17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr2-59336379-2	chr2	59335879	59336879	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 12 of 20)	intron (NM_175464, intron 12 of 20)	50303.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34282101-4	chr10	34281570	34282570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009433)	promoter-TSS (NM_009433)	-120.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111972035-2	chr10	111971535	111972535	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178610)	promoter-TSS (NM_178610)	-660.0	NM_178610	52705.0	Mm.34606	NM_178610	ENSMUSG00000063334	Krr1	2610511F02Rik|AI255219|AI428520|D10Ertd773e|Hrb2	KRR1, small subunit (SSU) processome component, homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-43475593-2	chr10	43475093	43476093	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3547.0	NM_199028	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-22474270-4	chr6	22473771	22474771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118190.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35562152-4	chr18	35561646	35562646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010771)	promoter-TSS (NM_010771)	-12.0	NM_010771	17184.0	Mm.215034	NM_010771	ENSMUSG00000037236	Matr3	1110061A14Rik|2810017I02Rik|AI841759|AW555618|D030046F20Rik|mKIAA0723	matrin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15705596-4	chr17	15705068	15706068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007690, intron 1 of 35)	intron (NM_007690, intron 1 of 35)	601.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	40.5	88.5	100.5	67.5	119.0	66.5
Merged-chr19-6278302-4	chr19	6277796	6278796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 1 of 4)	intron (NM_010119, intron 1 of 4)	1400.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139345279-4	chr5	139344776	139345776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197980)	promoter-TSS (NM_197980)	-110.0	NM_197980	68033.0	Mm.261064	NM_197980	ENSMUSG00000045438	Cox19	1810074D02Rik|2810437L13Rik	cytochrome c oxidase assembly protein 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122029022-4	chr2	122028585	122029585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256055, intron 2 of 7)	CpG-8471	502.0	NM_001256055	100042807.0	Mm.329403	NM_001256055	ENSMUSG00000043424	Eif3j2	Eif3j-2|Gm9781|eIF3 p35|eIF3j-B	eukaryotic translation initiation factor 3, subunit J2	protein-coding	7.0	49.0	45.0	43.5	44.0	46.5
Merged-chr1-93818353-4	chr1	93817850	93818850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025454, exon 8 of 8)	3' UTR (NM_025454, exon 8 of 8)	-6890.0	NM_178882	98314.0	Mm.383401	NM_178882	ENSMUSG00000073609	D2hgdh	AA408776|AA408778|AI325464	D-2-hydroxyglutarate dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150914560-4	chr4	150914081	150915081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4660.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55713600-4	chr14	55713080	55714080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161715)	promoter-TSS (NM_001161715)	-88.0	NM_001161715	21816.0	Mm.41964	NM_019984	ENSMUSG00000022218	Tgm1	2310004J08Rik|Tgase1	transglutaminase 1, K polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60672596-2	chr13	60672086	60673086	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	70375.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	61.5	188.5	111.0	60.5	135.5	114.5
Merged-chr17-35752785-4	chr17	35752284	35753284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19666.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	29.0	45.0	22.0	19.0	12.5	12.5
Merged-chr12-30584425-4	chr12	30583970	30584970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172049)	promoter-TSS (NM_172049)	27.0	NM_172049	211986.0	Mm.34035	NM_172049	ENSMUSG00000043061	Tmem18	BC024093	transmembrane protein 18	protein-coding	20.0	55.5	33.0	21.0	47.5	76.5
Merged-chr17-31187618-2	chr17	31187118	31188118	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163776, intron 9 of 12)	intron (NM_001163776, intron 9 of 12)	10131.0	NM_080727	140765.0	Mm.214638	NM_080727	ENSMUSG00000024034	Tmprss3	-	transmembrane protease, serine 3	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr15-102625353-6	chr15	102624826	102625826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001310070, exon 1 of 12)	5' UTR (NM_001310070, exon 1 of 12)	138.0	NM_001310070	223922.0	Mm.208714	NM_146065	ENSMUSG00000099083	Atf7	1110012F10Rik|9430065F09Rik|AI549878|C130020M04Rik	activating transcription factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25616071-2	chr2	25615571	25616571	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029859, intron 4 of 13)	intron (NM_029859, intron 4 of 13)	1607.0	NM_029859	77058.0	Mm.478493	NM_029859	ENSMUSG00000026940	Ccdc183	4921530D09Rik|Cccd183|Kiaa1984	coiled-coil domain containing 183	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-8691426-4	chr6	8690941	8691941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252266, intron 5 of 11)	intron (NM_001252266, intron 5 of 11)	67017.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27856452-4	chr17	27855930	27856930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080769)	promoter-TSS (NM_001080769)	-77.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	0.5	6.0	6.5	0.5	4.0	6.0
Merged-chr11-114680463-4	chr11	114679977	114680977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	5009.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-48086131-4	chr6	48085608	48086608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362062, intron 1 of 5)	CpG	485.0	NM_001347142	69228.0	Mm.207555	NM_001163475	ENSMUSG00000057691	Zfp746	2810407L07Rik|AI317225|Znf746	zinc finger protein 746	protein-coding	10.5	23.5	14.0	18.0	6.5	17.0
Merged-chr4-130915945-2	chr4	130915445	130916445	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	2611.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165134015-4	chr1	165133520	165134520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	26753.0	NM_032005	83993.0	Mm.190649	NM_032005	ENSMUSG00000026572	Tbx19	AU019250|D1Ertd754e|Tpit	T-box 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138257192-4	chr5	138256700	138257700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081108, intron 2 of 3)	intron (NM_001081108, intron 2 of 3)	1718.0	NM_001081108	66096.0	Mm.206901	NM_001081108	ENSMUSG00000050552	Lamtor4	0910001L09Rik|AV006840	late endosomal/lysosomal adaptor, MAPK and MTOR activator 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132595922-4	chr2	132595422	132596422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2274.0	NR_033468	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118663149-4	chr14	118662643	118663643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033336, intron 3 of 30)	intron (NM_001033336, intron 3 of 30)	13788.0	NM_001163675	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-9531848-4	chr11	9531350	9532350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 45 of 61)	intron (NM_178259, intron 45 of 61)	339908.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65509547-2	chr9	65509047	65510047	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46846.0	NM_001357813	27965.0	Mm.272475	NM_138584	ENSMUSG00000032388	Spg21	ACP33|BM-019|C78576|D9Wsu18e|GL010|MAST	SPG21, maspardin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74435764-4	chr1	74435253	74436253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009509)	TTS (NM_009509)	26369.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104570638-4	chr8	104570132	104571132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20836.0	NM_001024606	382051.0	Mm.290750	NM_001024606	ENSMUSG00000048371	Pdp2	4833426J09Rik|Gm1705|mKIAA1348	pyruvate dehyrogenase phosphatase catalytic subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118763632-1	chr2	118763132	118764132	+	1000.0	f1_balb.idr	promoter-TSS (NM_001001982)	promoter-TSS (NM_001001982)	-971.0	NM_001001982	214239.0	Mm.379342	NM_001001982	ENSMUSG00000045838	A430105I19Rik	Ccdc9b|Gm353	RIKEN cDNA A430105I19 gene	protein-coding	0.0	1.0	2.5	0.0	0.0	0.0
Merged-chr4-135433869-4	chr4	135433387	135434387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022980)	promoter-TSS (NM_022980)	-82.0	NM_022980	53902.0	Mm.331970	NM_022980	ENSMUSG00000059713	Rcan3	AU041093|Csp3|Dscr1l2	regulator of calcineurin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76303879-4	chr15	76303380	76304380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153122, intron 10 of 26)	RLTR20C2_MM|LTR|ERVK	3365.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182341628-4	chr1	182341114	182342114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175127)	promoter-TSS (NM_175127)	-8.0	NM_175127	67948.0	Mm.30737	NM_175127	ENSMUSG00000047539	Fbxo28	4833428J17Rik|5730505P19Rik|D1Ertd578e|Fbx28|mKIAA0483	F-box protein 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100786625-4	chr13	100786134	100787134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172301)	promoter-TSS (NM_172301)	-148.0	NM_172301	268697.0	Mm.260114	NM_172301	ENSMUSG00000041431	Ccnb1	Ccnb1-rs1|Ccnb1-rs13|CycB1|Cycb-4|Cycb-5|Cycb1-rs1	cyclin B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-67072079-4	chr14	67071568	67072568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360034, intron 1 of 8)	CpG	403.0	NM_001360034	71978.0	Mm.273997	NM_028032	ENSMUSG00000022052	Ppp2r2a	2410004D02Rik|mKIAA1541	protein phosphatase 2, regulatory subunit B, alpha	protein-coding	18.0	44.5	55.5	14.0	40.5	60.0
Merged-chr6-40325487-4	chr6	40324856	40325856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023538)	promoter-TSS (NM_023538)	-122.0	NM_023538	69923.0	Mm.32840	NM_023538	ENSMUSG00000029916	Agk	2610037M15Rik|6720408I04Rik|AI465370|Mulk	acylglycerol kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-137697028-4	chr6	137696536	137697536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38046.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18047870-2	chr16	18047370	18048370	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4990.0	NM_010047	13353.0	Mm.27155	NM_010047	ENSMUSG00000003531	Dgcr6	-	DiGeorge syndrome critical region gene 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101608061-4	chr7	101607590	101608590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26929.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	62.0	160.5	110.0	20.5	197.5	78.0
Merged-chr10-44069301-4	chr10	44068800	44069800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64454.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91965634-4	chr2	91965144	91966144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2081.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127079655-4	chr2	127079169	127080169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026678, intron 1 of 7)	MTA_Mm|LTR|ERVL-MaLR	9012.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	44.0	114.5	78.5	17.0	51.0	44.0
Merged-chr1-140183316-4	chr1	140182766	140183766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009888, exon 1 of 22)	exon (NM_009888, exon 1 of 22)	145.0	NM_009888	12628.0	Mm.8655	NM_009888	ENSMUSG00000026365	Cfh	Mud-1|NOM|Sas-1|Sas1	complement component factor h	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95217956-4	chr3	95217466	95218466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172512)	promoter-TSS (NM_172512)	-24.0	NM_029885	213054.0	Mm.224820	NM_029885	ENSMUSG00000038766	Gabpb2	1810015F01Rik|5830427M07|9430006E19Rik|A430024B14Rik|AV050852|Gabpb2-1	GA repeat binding protein, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110411707-4	chr9	110411208	110412208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3498.0	NM_001081043	104831.0	Mm.335477	NM_001081043	ENSMUSG00000036057	Ptpn23	AI462446|PTP-TD14	protein tyrosine phosphatase, non-receptor type 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72381035-2	chr6	72380535	72381535	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080742)	promoter-TSS (NM_001080742)	-567.0	NM_016872	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46522770-2	chr18	46522270	46523270	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173423, intron 2 of 2)	(GGA)n|Simple_repeat|Simple_repeat	3201.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95731144-2	chr16	95730644	95731644	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28737.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46311922-4	chr18	46311414	46312414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160399)	promoter-TSS (NM_001160399)	14.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	0.0	10.0	12.5	1.5	9.0	14.0
Merged-chr1-132139723-4	chr1	132139170	132140170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008795)	promoter-TSS (NM_008795)	15.0	NM_008795	18557.0	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62872221-2	chr9	62871721	62872721	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138304, intron 4 of 4)	intron (NM_138304, intron 4 of 4)	-10197.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31039822-4	chr17	31039316	31040316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17878.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	34.0	115.0	86.0	10.0	45.5	40.0
Merged-chr13-60724190-4	chr13	60723555	60724555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 11 of 26)	(CA)n|Simple_repeat|Simple_repeat	62309.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	25.5	68.0	44.5	53.5	85.0	66.0
Merged-chr15-83033356-4	chr15	83032852	83033852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271411)	promoter-TSS (NM_001271411)	45.0	NM_001271412	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0.5	21.5	23.0	7.0	13.0	15.5
Merged-chr15-12211680-4	chr15	12211174	12212174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356498, intron 1 of 15)	intron (NM_001356498, intron 1 of 15)	6646.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76510389-2	chr15	76509877	76510877	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010046, intron 1 of 16)	MT2B|LTR|ERVL	1617.0	NM_010046	13350.0	Mm.22633	NM_010046	ENSMUSG00000022555	Dgat1	ARAT|C75990|D15Ertd23e|Dgat	diacylglycerol O-acyltransferase 1	protein-coding	1.0	0.0	0.0	3.0	0.0	0.0
Merged-chr12-76553189-4	chr12	76552681	76553681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	-5256.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-111330663-4	chr5	111330193	111331193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301666)	promoter-TSS (NM_001301666)	-4.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	64.0	135.5	103.0	58.0	172.0	137.5
Merged-chr10-122815299-3	chr10	122814815	122815815	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 4 of 9)	intron (NM_001110218, intron 4 of 9)	136000.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	2.0	0.5	7.5	4.0	2.0	13.0
Merged-chr17-88118069-4	chr17	88117568	88118568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7444.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101543677-4	chr11	101543165	101544165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009764, intron 2 of 22)	intron (NM_009764, intron 2 of 22)	8290.0	NM_009764	12189.0	Mm.244975	NM_009764	ENSMUSG00000017146	Brca1	-	breast cancer 1, early onset	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110430803-4	chr11	110430314	110431314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	31712.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-83536286-4	chr9	83535767	83536767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12071.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	28.5	23.0	29.5	17.5	31.0	21.0
Merged-chr4-123612142-4	chr4	123611649	123612649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-4271.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26512598-4	chr17	26512078	26513078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4106.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	11.0	29.0	17.5	12.0	16.5	15.0
Merged-chr12-91766480-4	chr12	91765979	91766979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	19957.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23622558-4	chr13	23622091	23623091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015787)	promoter-TSS (NM_015787)	-33.0	NM_015787	50709.0	Mm.170587	NM_015787	ENSMUSG00000051627	Hist1h1e	H1-4|H1.4|H1e|H1f4|H1s-4|H1var2	histone cluster 1, H1e	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17409881-4	chr6	17409390	17410390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54067.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	14.5	11.0	4.0	14.0	3.5	10.5
Merged-chr15-97520181-4	chr15	97519657	97520657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	185665.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59235371-4	chr10	59234876	59235876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	13454.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109564086-4	chr8	109563590	109564590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151644, intron 1 of 26)	intron (NR_151644, intron 1 of 26)	1771.0	NR_151644	64340.0	Mm.23705	NM_178380	ENSMUSG00000037993	Dhx38	5730550P09Rik|AI325984|AW540902|Ddx38|KIAA0224|Prp16	DEAH (Asp-Glu-Ala-His) box polypeptide 38	protein-coding	6.0	12.5	15.5	11.0	3.5	8.0
Merged-chr15-64059229-4	chr15	64058733	64059733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	531.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-45795365-7	chr1	45794842	45795842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028599, exon 1 of 21)	5' UTR (NM_028599, exon 1 of 21)	176.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51422441-1	chr10	51421941	51422941	+	1000.0	f0_balb.idr	Intergenic	RLTR13D3|LTR|ERVK	-58171.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165661908-4	chr1	165661397	165662397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 2 of 5)	intron (NM_001038846, intron 2 of 5)	-27356.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121593634-4	chr5	121593139	121594139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001308450, exon 1 of 11)	5' UTR (NM_001308450, exon 1 of 11)	185.0	NM_009656	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-75218580-6	chr1	75218081	75219081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313723, intron 1 of 3)	intron (NM_001313723, intron 1 of 3)	713.0	NM_001313723	22145.0	Mm.1155	NM_009447	ENSMUSG00000026202	Tuba4a	M[a]4|Tuba4	tubulin, alpha 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30922791-4	chr16	30922283	30923283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	158649.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55029012-4	chr1	55028524	55029524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-1546.0	NM_031179	81898.0	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	68.0	229.0	146.5	87.5	289.5	152.0
Merged-chr4-139430366-4	chr4	139429892	139430892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160319, intron 48 of 105)	intron (NM_001160319, intron 48 of 105)	49733.0	NM_001160319	69116.0	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	0.0	0.0	0.5	0.0	9.0	0.5
Merged-chr15-86169241-4	chr15	86168746	86169746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-16482.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-17013139-4	chr11	17012632	17013632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4414.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91597802-4	chr16	91597305	91598305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030018)	promoter-TSS (NM_030018)	-125.0	NM_030018	77975.0	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52742370-4	chr2	52741883	52742883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019667)	promoter-TSS (NM_019667)	-234.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103101626-4	chr11	103101125	103102125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025988)	promoter-TSS (NM_025988)	33.0	NM_152813	72469.0	Mm.264743	NM_152813	ENSMUSG00000020937	Plcd3	2610205J15Rik|mKIAA1964	phospholipase C, delta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72549139-4	chr6	72548669	72549669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271395)	promoter-TSS (NM_001271395)	-104.0	NM_001042534	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	9.0	23.0	15.0	11.5	25.5	16.0
Merged-chr6-86684515-4	chr6	86684020	86685020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025665)	promoter-TSS (NM_025665)	-29.0	NM_025665	66618.0	Mm.182650	NM_025665	ENSMUSG00000001158	Snrnp27	2610209M04Rik|AI449063|AU022368|Ry1	small nuclear ribonucleoprotein 27 (U4/U6.U5)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132103564-4	chr2	132103074	132104074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	41534.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95324100-4	chr10	95323597	95324597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330175)	promoter-TSS (NM_001330175)	40.0	NM_001330141	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98774522-2	chr11	98774022	98775022	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145434, intron 1 of 7)	intron (NM_145434, intron 1 of 7)	855.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24037468-4	chr17	24036956	24037956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175440)	promoter-TSS (NM_175440)	-787.0	NM_175440	213171.0	Mm.133083	NM_175440	ENSMUSG00000050762	Prss27	CAPH2|Mpn|marapsin	protease, serine 27	protein-coding	0.0	10.0	13.5	1.0	13.0	9.0
Merged-chr19-29463819-4	chr19	29463343	29464343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	MTC|LTR|ERVL-MaLR	52924.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4679800-4	chr16	4679291	4680291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030205)	promoter-TSS (NM_030205)	-71.0	NM_030205	78885.0	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120826400-3	chr9	120825864	120826864	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88886.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	0.5	17.5	22.5	95.5	126.5	148.5
Merged-chr2-133552165-4	chr2	133551662	133552662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007553)	promoter-TSS (NM_007553)	3.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158745225-2	chr2	158744725	158745725	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153089, intron 3 of 10)	intron (NM_153089, intron 3 of 10)	-22874.0	NM_027975	71878.0	Mm.85162	NM_027975	ENSMUSG00000027654	Fam83d	2310007D09Rik|BB104611	family with sequence similarity 83, member D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180196047-4	chr1	180195516	180196516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359268)	promoter-TSS (NM_001359268)	4.0	NM_023341	67426.0	Mm.38330	NM_023341	ENSMUSG00000026489	Coq8a	4632432J16Rik|AI462003|Adck3|Cabc1|mKIAA0451	coenzyme Q8A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-25081744-4	chr5	25081252	25082252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 1 of 15)	intron (NM_145401, intron 1 of 15)	18890.0	NM_145401	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-129864614-3	chr5	129864113	129865113	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026445)	TTS (NM_026445)	14475.0	NR_145486	18682.0	Mm.3159	NM_011079	ENSMUSG00000025537	Phkg1	Phkg	phosphorylase kinase gamma 1	protein-coding	8.5	17.5	8.5	53.0	40.5	20.0
Merged-chr19-4191533-2	chr19	4191033	4192033	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031868)	promoter-TSS (NM_031868)	-486.0	NM_178650	108995.0	Mm.288312	NM_178650	ENSMUSG00000040247	Tbc1d10c	1810062O14Rik|AI428527	TBC1 domain family, member 10c	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46265093-2	chr11	46264593	46265593	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252459, intron 13 of 30)	MTC|LTR|ERVL-MaLR	29536.0	NM_177075	320116.0	Mm.39600	NM_177075	ENSMUSG00000048721	Fndc9	C030019I05Rik	fibronectin type III domain containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31385092-4	chr14	31384567	31385567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 3 of 7)	intron (NM_001347585, intron 3 of 7)	32610.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-83646542-4	chr10	83646036	83647036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145220, intron 1 of 20)	Lx8|LINE|L1	2128.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-151009311-4	chr2	151008810	151009810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207204)	promoter-TSS (NM_207204)	88.0	NM_207204	78177.0	Mm.120911	NM_207204	ENSMUSG00000068115	Ninl	4930519N13Rik|Gm1004|Gm1634|mKIAA0980	ninein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-107489831-4	chr1	107489342	107490342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-21581.0	NM_001174170	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	26.0	27.5	14.0	9.5	36.5	9.0
Merged-chr6-116265790-4	chr6	116265287	116266287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290339)	promoter-TSS (NM_001290339)	-745.0	NM_001290339	67492.0	Mm.272772	NM_001081317	ENSMUSG00000042213	Zfand4	Anubl1	zinc finger, AN1-type domain 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116137009-4	chr9	116136512	116137512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	38351.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	38.5	122.5	86.5	55.5	86.5	104.0
Merged-chr11-82781335-6	chr11	82780825	82781825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126067)	promoter-TSS (NR_126067)	216.0	NM_010716	16882.0	Mm.277136	NM_010716	ENSMUSG00000020697	Lig3	D11Wsu78e	ligase III, DNA, ATP-dependent	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35124466-2	chr7	35123966	35124966	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5173.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	3.0	2.5	10.0	5.0	7.0	7.5
Merged-chr14-117938848-2	chr14	117938348	117939348	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001079844, intron 7 of 9)	intron (NM_001079844, intron 7 of 9)	14999.0	NR_105747	102465148.0		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44373922-4	chr7	44373414	44374414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027049, intron 2 of 5)	intron (NM_027049, intron 2 of 5)	1116.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76964210-4	chr14	76963693	76964693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72424.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	15.5	7.0	9.5	19.5	7.5	29.5
Merged-chr2-28497841-2	chr2	28497341	28498341	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139197, intron 2 of 6)	intron (NM_139197, intron 2 of 6)	950.0	NM_139197	227671.0	Mm.484270	NM_139197	ENSMUSG00000026829	Gbgt1	Fgs|Fs	globoside alpha-1,3-N-acetylgalactosaminyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10945949-4	chr16	10945451	10946451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31154.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85524614-4	chr12	85524123	85525123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50733.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155074397-5	chr2	155073876	155074876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016661, exon 1 of 10)	exon (NM_016661, exon 1 of 10)	121.0	NM_016661	269378.0	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	14.0	24.5	35.0	12.5	19.5	23.0
Merged-chr1-171018886-4	chr1	171018384	171019384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144559)	promoter-TSS (NM_144559)	-42.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5123462-4	chr18	5122950	5123950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42281.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6520938-4	chr11	6520409	6521409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178440)	promoter-TSS (NM_178440)	49.0	NM_178440	246177.0	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	33.0	54.0	34.5	17.0	38.0	48.0
Merged-chr15-79328287-4	chr15	79327805	79328805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199024)	promoter-TSS (NM_001199024)	66.0	NM_016915	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	17.0	66.0	38.0	11.5	43.5	35.0
Merged-chr6-57825050-4	chr6	57824535	57825535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146168)	promoter-TSS (NM_146168)	90.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75180243-2	chr14	75179743	75180743	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	43818.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45565332-2	chr7	45564837	45565837	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025330, intron 6 of 8)	intron (NM_025330, intron 6 of 8)	-4816.0	NM_009737	12036.0	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat(m)|Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113326160-2	chr6	113325660	113326660	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_149720)	promoter-TSS (NR_149720)	-816.0	NR_149720	18294.0	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76537620-4	chr12	76537116	76538116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	4056.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23621209-4	chr13	23620694	23621694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178194)	promoter-TSS (NM_178194)	-70.0	NM_178194	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134677350-2	chr5	134676850	134677850	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010717, intron 2 of 15)	intron (NM_010717, intron 2 of 15)	898.0	NM_001305875	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91355876-2	chr16	91355376	91356376	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3A1|LTR|ERVK	-16907.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5951893-4	chr2	5951356	5952356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081132, intron 1 of 21)	CpG	387.0	NM_001081132	326622.0	Mm.31102	NM_001081132	ENSMUSG00000043241	Upf2	-	UPF2 regulator of nonsense transcripts homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87663258-2	chr16	87662758	87663758	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35696.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	28.5	56.5	32.0	45.5	72.5	33.0
Merged-chr7-110121846-4	chr7	110121341	110122341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355058)	promoter-TSS (NM_001355058)	-218.0	NM_001355058	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89228315-4	chr3	89227812	89228812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013605)	promoter-TSS (NM_013605)	-744.0	NM_013605	17829.0	Mm.16193	NM_013605	ENSMUSG00000042784	Muc1	CD227|EMA|Muc-1	mucin 1, transmembrane	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33985547-4	chr16	33985044	33986044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 56 of 59)	intron (NM_177357, intron 56 of 59)	-18506.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102248155-2	chr11	102247655	102248655	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153544)	promoter-TSS (NM_153544)	-727.0	NM_153544	217216.0	Mm.247335	NM_153544	ENSMUSG00000034773	BC030867	-	cDNA sequence BC030867	protein-coding	0.0	0.0	1.0	1.0	0.0	0.0
Merged-chr12-85541386-4	chr12	85540891	85541891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57714.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35121387-4	chr17	35120880	35121880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303476)	promoter-TSS (NM_001303476)	49.0	NM_001303445	13001.0	Mm.378901	NM_009975	ENSMUSG00000024387	Csnk2b	CK II beta	casein kinase 2, beta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25195325-2	chr2	25194825	25195825	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_146115, exon 2 of 2)	exon (NM_146115, exon 2 of 2)	1488.0	NM_146115	227612.0	Mm.119747	NM_146115	ENSMUSG00000059555	Tor4a	A830007P12Rik	torsin family 4, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-55090302-6	chr15	55089837	55090837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001355594, exon 1 of 10)	exon (NM_001355594, exon 1 of 10)	154.0	NM_183089	72107.0	Mm.486550	NM_183089	ENSMUSG00000022422	Dscc1	2010006I05Rik|2600005O03Rik|Dcc1	DNA replication and sister chromatid cohesion 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133169687-4	chr4	133169181	133170181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	-25974.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	155.5	444.0	333.0	153.0	446.0	226.5
Merged-chr3-61344262-4	chr3	61343754	61344754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20253.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88697549-3	chr8	88697040	88698040	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128170, intron 1 of 17)	intron (NM_001128170, intron 1 of 17)	512.0	NM_001128171	74256.0	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	153.0	400.5	236.0	116.0	339.5	212.0
Merged-chr12-24974987-4	chr12	24974492	24975492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081378)	promoter-TSS (NM_001081378)	60.0	NM_001081378	77480.0	Mm.250641	NM_001081378	ENSMUSG00000036333	Kidins220	3110039L19Rik|AI194387|AI316525|C330002I19Rik|mKIAA1250	kinase D-interacting substrate 220	protein-coding	17.5	48.0	62.0	16.0	46.5	57.0
Merged-chr1-151817075-4	chr1	151816562	151817562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311165, intron 20 of 20)	intron (NM_001311165, intron 20 of 20)	61688.0	NM_001311166	66967.0	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160011527-4	chr2	160011019	160012019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5134.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	26.0	19.5	36.5	17.0	25.5	35.5
Merged-chr16-4626711-4	chr16	4626214	4627214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030205)	TTS (NM_030205)	-1768.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89210696-4	chr15	89210204	89211204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027805)	promoter-TSS (NM_027805)	-855.0	NM_026813	71474.0	Mm.184055	NM_026813	ENSMUSG00000036561	Ppp6r2	1110033O10Rik|8430411H09Rik|B230107H12Rik|Pp6r2|Saps2	protein phosphatase 6, regulatory subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-32511123-4	chr6	32510614	32511614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040277)	promoter-TSS (NR_040277)	-27.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41640292-4	chr4	41639804	41640804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027147)	promoter-TSS (NM_027147)	-2.0	NM_027147	69638.0	Mm.372459	NM_027147	ENSMUSG00000028445	Enho	1110065P19Rik|2310040A07Rik	energy homeostasis associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-89644323-4	chr1	89643830	89644830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 6 of 16)	intron (NM_001037136, intron 6 of 16)	39562.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-109923564-4	chr5	109923050	109924050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10013.0	NR_040366	100642166.0		NR_040366	ENSMUSG00000090015	Gm15446	-	predicted gene 15446	ncRNA	5.0	8.0	9.5	3.5	2.5	4.0
Merged-chr1-16619351-4	chr1	16618850	16619850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025773)	promoter-TSS (NM_025773)	-12.0	NM_001271017	66799.0	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	15.0	3.0	11.0	26.0	29.5	27.0
Merged-chr17-43569990-1	chr17	43569490	43570490	+	1000.0	f0_balb.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	1539.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	52.0	111.0	68.5	75.0	129.5	93.5
Merged-chr18-67725199-2	chr18	67724699	67725699	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127177)	promoter-TSS (NM_001127177)	-578.0	NM_008977	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	1.5	6.5	2.5	3.0	5.5	2.5
Merged-chr10-10449269-4	chr10	10448789	10449789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 2 of 36)	intron (NM_001127353, intron 2 of 36)	23025.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	82.5	151.0	116.5	55.5	119.0	76.0
Merged-chr4-139188122-4	chr4	139187639	139188639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4760.0	NM_009798	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	18.5	107.0	82.0	25.5	85.0	46.5
Merged-chr2-35196068-4	chr2	35195577	35196577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026697, intron 1 of 7)	B1F1|SINE|Alu	5043.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108991789-4	chr9	108991280	108992280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173019)	promoter-TSS (NM_173019)	-122.0	NM_173019	270198.0	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95635769-4	chr3	95635268	95636268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10788.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	38.0	85.5	54.0	40.0	96.5	52.5
Merged-chr1-64301447-7	chr1	64300963	64301963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-180074.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23287488-4	chr16	23286986	23287986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-2984.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-75314225-4	chr9	75313726	75314726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_073186, exon 1 of 12)	non-coding (NR_073186, exon 1 of 12)	158.0	NM_138719	14697.0	Mm.17604	NM_010313	ENSMUSG00000032192	Gnb5	GBS|Gbeta5|flr	guanine nucleotide binding protein (G protein), beta 5	protein-coding	13.5	22.5	21.0	14.5	24.0	27.0
Merged-chr7-59163434-4	chr7	59162926	59163926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65324.0	NM_001033962	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	1.0	4.0	3.0	5.0	16.0	15.0
Merged-chr1-130387451-4	chr1	130386928	130387928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35396.0	NR_151525	102640368.0		NR_151525	ENSMUSG00000087691	Gm15674	-	predicted gene 15674	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45219555-4	chr14	45219074	45220074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027518)	promoter-TSS (NM_027518)	-143.0	NM_027518	70713.0	Mm.343793	NM_027518	ENSMUSG00000049092	Gpr137c	6330416L11Rik|Gm908|TM7SF1L2	G protein-coupled receptor 137C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-43951813-4	chr16	43951301	43952301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027801, intron 12 of 15)	intron (NM_027801, intron 12 of 15)	27249.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	9.5	14.5	12.5	5.5	29.5	9.0
Merged-chr11-51539808-4	chr11	51539315	51540315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153393, intron 5 of 28)	intron (NM_153393, intron 5 of 28)	-44942.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-6647873-4	chr13	6647366	6648366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019703, intron 1 of 21)	intron (NM_019703, intron 1 of 21)	905.0	NM_019703	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-98087738-4	chr3	98087249	98088249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 5 of 33)	intron (NM_010928, intron 5 of 33)	-72885.0	NM_027665	71078.0	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9682723-4	chr4	9682246	9683246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13402.0	NM_001290367	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	64.5	150.5	139.0	56.0	122.5	124.0
Merged-chr7-132366027-2	chr7	132365527	132366527	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48799.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35396922-4	chr7	35396393	35397393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178643)	promoter-TSS (NM_178643)	-126.0	NM_178643	101831.0	Mm.389855	NM_178643	ENSMUSG00000030493	Faap24	AW124591|AW538696|C230052I12Rik	Fanconi anemia core complex associated protein 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25372267-4	chr2	25371780	25372780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001290407, exon 1 of 6)	5' UTR (NM_001290407, exon 1 of 6)	245.0	NM_001081085	72080.0	Mm.250293	NM_001081085	ENSMUSG00000026955	Sapcd2	2010317E24Rik|6030458L21Rik|AL033337|ang	suppressor APC domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-92876788-4	chr7	92876308	92877308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028243, intron 1 of 8)	intron (NM_028243, intron 1 of 8)	1555.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-54926421-4	chr1	54925927	54926927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081433)	promoter-TSS (NM_001081433)	-40.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77910732-4	chr9	77910257	77911257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6608.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120881233-4	chr4	120880741	120881741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182929, intron 3 of 7)	intron (NM_182929, intron 3 of 7)	26442.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	10.0	13.0	10.5	2.0	17.5	7.0
Merged-chr10-77565970-4	chr10	77565469	77566469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008404)	TTS (NM_008404)	-15686.0	NM_145925	108705.0	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540|PBF	pituitary tumor-transforming 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34203166-2	chr17	34202666	34203666	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1313.0	NM_011530	21355.0	Mm.14814	NM_011530	ENSMUSG00000024339	Tap2	ABC18|AI462429|APT2|Abcb3|Ham-2|Ham2|MTP2|PSF2|RING11|Tap-2|Y1|jas	transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120350348-4	chr11	120349845	120350845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038126, intron 1 of 1)	CpG	1667.0	NR_038126	66838.0	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-33931799-4	chr13	33931328	33932328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243192, intron 2 of 7)	intron (NM_001243192, intron 2 of 7)	-4204.0	NR_040707	68808.0	Mm.443347	NR_040707	ENSMUSG00000085457	1110046J04Rik	-	RIKEN cDNA 1110046J04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-24216677-1	chr6	24216177	24217177	+	1000.0	f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-48585.0	NM_019481	55961.0	Mm.19299	NM_019481	ENSMUSG00000029700	Slc13a1	AI314066|AI987826|NaSi-1|Nas1	solute carrier family 13 (sodium/sulfate symporters), member 1	protein-coding	0.0	0.0	3.0	0.0	0.0	2.5
Merged-chr8-3481846-4	chr8	3481319	3482319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029598, intron 4 of 8)	RLTR12A|LTR|ERVK	10957.0	NM_029598	76406.0	Mm.74996	NM_029598	ENSMUSG00000040340	Tex45	1700019B03Rik	testis expressed 45	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-22773678-4	chr2	22773156	22774156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019456)	promoter-TSS (NM_019456)	-671.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119409310-8	chr13	119408749	119409749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008710)	promoter-TSS (NM_008710)	8.0	NM_001308506	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79171746-4	chr12	79171257	79172257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016800, intron 1 of 5)	intron (NM_016800, intron 1 of 5)	701.0	NM_016800	53612.0	Mm.265929	NM_016800	ENSMUSG00000021124	Vti1b	AU015348|GES30|MVti1b|SNARE|Vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155065450-4	chr1	155064923	155065923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151545, intron 4 of 6)	L2b|LINE|L2	17841.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125573396-4	chr6	125572890	125573890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 6 of 51)	intron (NM_011708, intron 6 of 51)	20442.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50834675-3	chr14	50834166	50835166	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009351, intron 41 of 54)	RLTR12B|LTR|ERVK	26750.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	86.0	229.5	170.0	106.5	218.0	153.0
Merged-chr10-128058473-2	chr10	128057973	128058973	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019766)	promoter-TSS (NM_019766)	-509.0	NM_019766	56351.0	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113830463-4	chr5	113829965	113830965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009151)	promoter-TSS (NM_009151)	36.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	12.5	32.5	33.5	13.5	24.0	29.0
Merged-chr12-25101231-4	chr12	25100734	25101734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5142.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	52.5	120.0	114.5	40.5	110.5	115.5
Merged-chr7-44970321-4	chr7	44969803	44970803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357670, intron 6 of 18)	intron (NM_001357670, intron 6 of 18)	4548.0	NM_001357670	78070.0	Mm.231465	NM_153679	ENSMUSG00000007783	Cpt1c	6530437J22Rik|9630004I06Rik|CPT I-C|CPT IC|CPT1-B|CPTI-B	carnitine palmitoyltransferase 1c	protein-coding	1.5	16.5	7.5	3.5	41.0	14.5
Merged-chr2-174344312-4	chr2	174343841	174344841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077507, intron 5 of 10)	intron (NM_001077507, intron 5 of 10)	14252.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118703233-4	chr7	118702720	118703720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019580, intron 1 of 5)	intron (NM_019580, intron 1 of 5)	2518.0	NM_019580	56209.0	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	227.0	503.0	366.0	220.5	490.5	328.5
Merged-chr2-27009998-4	chr2	27009519	27010519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029862)	promoter-TSS (NM_029862)	93.0	NM_001243239	381356.0	Mm.150270	NM_029862	ENSMUSG00000015488	Cacfd1	5930434B04Rik|mFwe	calcium channel flower domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-57954668-4	chr4	57954168	57955168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011660, intron 1 of 4)	intron (NM_011660, intron 1 of 4)	1743.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-68049791-4	chr5	68049283	68050283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001018019, intron 1 of 3)	intron (NM_001018019, intron 1 of 3)	17948.0	NM_001018019	433899.0	Mm.332422	NM_001018019	ENSMUSG00000068082	Grxcr1	Tg(Eno2-Gabrb3)0370Brll|pi|tde	glutaredoxin, cysteine rich 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-48853833-7	chr11	48853280	48854280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16309.0	NM_001347446	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69914073-4	chr11	69913594	69914594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357906)	promoter-TSS (NM_001357906)	60.0	NM_019726	56310.0	Mm.477738	NM_019726	ENSMUSG00000023170	Gps2	AI505953|GPS-2	G protein pathway suppressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-115362364-4	chr10	115361858	115362858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359470)	promoter-TSS (NM_001359470)	-91.0	NM_001359471	67226.0	Mm.29647	NM_133683	ENSMUSG00000069520	Tmem19	2810428F02Rik|AW125171	transmembrane protein 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120716213-4	chr8	120715713	120716713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20145.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32501043-4	chr9	32500529	32501529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	40423.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5448771-2	chr19	5448271	5449271	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010235, intron 1 of 3)	CpG	1073.0	NM_010235	14283.0	Mm.6215	NM_010235	ENSMUSG00000024912	Fosl1	AW538199|Fra1|fra-1	fos-like antigen 1	protein-coding	0.0	0.0	1.0	0.0	0.0	0.5
Merged-chr7-43665127-4	chr7	43664622	43665622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-4961.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20966304-4	chr10	20965799	20966799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358561, intron 6 of 22)	intron (NM_001358561, intron 6 of 22)	13752.0	NM_001358561	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125719216-2	chr8	125718716	125719716	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14987.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64209411-2	chr5	64208911	64209911	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-20946.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27714375-4	chr2	27713889	27714889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	3806.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120866242-4	chr6	120865733	120866733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153516, intron 4 of 6)	intron (NM_153516, intron 4 of 6)	30003.0	NM_153516	94044.0	Mm.27990	NM_153516	ENSMUSG00000009112	Bcl2l13	BCL-RAMBO|E430016C20Rik|Mil-1|Mil1	BCL2-like 13 (apoptosis facilitator)	protein-coding	2.0	0.5	4.0	1.5	2.5	2.0
Merged-chr4-119539567-4	chr4	119539069	119540069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172699)	promoter-TSS (NM_172699)	-92.0	NM_001290696	230700.0	Mm.259227	NM_172699	ENSMUSG00000032998	Foxj3	C330039G02Rik|Fhd6	forkhead box J3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121384078-4	chr5	121383563	121384563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163470, exon 2 of 12)	exon (NM_001163470, exon 2 of 12)	1346.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	23.5	53.0	43.5	8.5	37.0	49.0
Merged-chr9-121314983-4	chr9	121314476	121315476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	17474.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-108846680-2	chr11	108846180	108847180	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029606, intron 25 of 27)	intron (NM_029606, intron 25 of 27)	-73669.0	NM_015732	12006.0	Mm.71710	NM_015732	ENSMUSG00000000142	Axin2	Axi1|Axil|Conductin	axin 2	protein-coding	2.0	2.0	5.5	1.5	1.0	0.5
Merged-chr18-38350169-4	chr18	38349678	38350678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11185.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22119650-4	chr9	22119155	22120155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2460.0	NM_001357312	66126.0	Mm.29801	NM_170777	ENSMUSG00000013822	Elof1	1110011K10Rik	ELF1 homolog, elongation factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56713850-4	chr19	56713355	56714355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8517.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	2.0	12.0	9.5	1.0	12.0	10.5
Merged-chr5-130205711-4	chr5	130205203	130206203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199059, intron 4 of 8)	intron (NM_001199059, intron 4 of 8)	-14041.0	NM_001081394	71667.0	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120715421-4	chr8	120714924	120715924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20934.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63713220-2	chr9	63712720	63713720	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	44774.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25680719-4	chr7	25680210	25681210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362154)	promoter-TSS (NM_001362154)	-70.0	NM_001362154	232987.0	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80074936-4	chr15	80074428	80075428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3651.0	NR_028282	100302601.0		NR_028282	ENSMUSG00000077734	Snord83b	MBII-10	small nucleolar RNA, C/D box 83B	snoRNA	65.5	96.5	62.0	25.5	146.0	83.0
Merged-chr4-55665028-4	chr4	55664536	55665536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132561.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	19.0	10.5	14.5	36.5	31.5	22.5
Merged-chr5-113634049-4	chr5	113633562	113634562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	9541.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8723315-4	chr19	8722805	8723805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002896)	promoter-TSS (NR_002896)	64.0	NM_001161413	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16189644-1	chr7	16189144	16190144	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	14249.0	NR_102730	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	7.0	28.0	18.5	0.0	3.0	0.0
Merged-chr4-130902390-4	chr4	130901878	130902878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10956.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-164074835-4	chr1	164074348	164075348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164059, intron 6 of 7)	intron (NM_001164059, intron 6 of 7)	12772.0	NM_011346	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26168184-4	chr17	26167701	26168701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159598, intron 2 of 9)	ORR1B1|LTR|ERVL-MaLR	29515.0	NM_001159598	12005.0	Mm.23684	NM_009733	ENSMUSG00000024182	Axin1	AI316800|Axin|Fu|Kb|Ki|fused|kinky|knobbly	axin 1	protein-coding	8.5	15.5	19.0	8.5	15.5	16.0
Merged-chr2-133511639-4	chr2	133511143	133512143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40516.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-107561333-4	chr8	107560797	107561797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10053.0	NR_029553	387158.0		NR_029553	ENSMUSG00000065439	Mir140	Mirn140|mir-140|mmu-mir-140	microRNA 140	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30472132-4	chr2	30471632	30472632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030244)	TTS (NM_030244)	2067.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79960032-4	chr10	79959542	79960542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175450)	promoter-TSS (NM_175450)	-110.0	NM_175450	216156.0	Mm.35828	NM_175450	ENSMUSG00000035754	Wdr18	2310012I10Rik|AU044733|AW122032	WD repeat domain 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167101890-4	chr2	167101404	167102404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008420, exon 2 of 2)	3' UTR (NM_008420, exon 2 of 2)	36611.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-143307558-4	chr6	143307051	143308051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61663.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50292475-4	chr11	50291981	50292981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175334)	promoter-TSS (NM_175334)	-145.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-28944443-4	chr4	28943949	28944949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290434, intron 9 of 16)	intron (NM_001290434, intron 9 of 16)	-123630.0	NR_151693	102634169.0		NR_151693		Gm11917	-	predicted gene 11917	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-41047451-4	chr8	41046955	41047955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 5 of 13)	intron (NM_001005863, intron 5 of 13)	-5524.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	15.0	71.5	20.0	30.5	40.5	33.5
Merged-chr2-59645191-1	chr2	59644691	59645691	+	1000.0	f0_balb.idr	intron (NM_198294, intron 1 of 26)	intron (NM_198294, intron 1 of 26)	-1578.0	NM_001290659	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41482441-1	chr19	41481941	41482941	+	1000.0	f0_balb.idr	Intergenic	CpG	-42811.0	NM_001326287	627352.0	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	35.0	67.0	78.5	26.0	93.5	74.5
Merged-chr4-142084038-7	chr4	142083549	142084549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027137)	promoter-TSS (NR_027137)	-249.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45246273-4	chr9	45245797	45246797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 4 of 4)	intron (NM_001198971, intron 4 of 4)	20410.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-53191983-4	chr2	53191492	53192492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022989)	promoter-TSS (NM_022989)	-92.0	NM_022989	65103.0	Mm.37623	NM_022989	ENSMUSG00000026960	Arl6ip6	2310057C01Rik|2610529A11Rik|Aip-6	ADP-ribosylation factor-like 6 interacting protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77797788-2	chr18	77797288	77798288	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 1 of 14)	intron (NM_013831, intron 1 of 14)	-1398.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20896443-4	chr18	20895939	20896939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029491)	promoter-TSS (NM_029491)	-361.0	NM_177038	75964.0	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66186751-4	chr14	66186247	66187247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 5 of 30)	intron (NM_001162366, intron 5 of 30)	27077.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20546212-4	chr14	20545710	20546710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033571)	promoter-TSS (NR_033571)	-83.0	NR_033571	75602.0	Mm.437061	NR_033571	ENSMUSG00000084925	1810062O18Rik	-	RIKEN cDNA 1810062O18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4375254-3	chr16	4374685	4375685	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009624, intron 2 of 10)	intron (NM_009624, intron 2 of 10)	45313.0	NM_001291910	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171408472-2	chr1	171407972	171408972	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001005508, exon 12 of 12)	exon (NM_001005508, exon 12 of 12)	-2841.0	NM_001305678	22278.0	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	12.5	7.5	10.0	3.5	9.0	9.0
Merged-chr1-180433146-2	chr1	180432646	180433646	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081227, exon 4 of 4)	3' UTR (NM_001081227, exon 4 of 4)	50358.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85964683-4	chr12	85964194	85965194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	114347.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40141127-4	chr10	40140638	40141638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	1116.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64755378-2	chr17	64754878	64755878	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008549)	TTS (NM_008549)	-11733.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-104122726-4	chr2	104122212	104123212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026634)	promoter-TSS (NM_026634)	-57.0	NM_026634	68243.0	Mm.158191	NM_026634	ENSMUSG00000032671	A930018P22Rik	-	RIKEN cDNA A930018P22 gene	protein-coding	2.0	9.0	7.0	0.0	5.0	0.0
Merged-chr13-20133876-4	chr13	20133378	20134378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	43371.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-52833996-4	chr5	52833494	52834494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024213)	promoter-TSS (NM_024213)	-141.0	NM_024213	52206.0	Mm.272568	NM_024213	ENSMUSG00000029176	Anapc4	2610306D21Rik|APC4|D5Ertd249e	anaphase promoting complex subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143830157-4	chr7	143829673	143830673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007856, exon 2 of 9)	5' UTR (NM_007856, exon 2 of 9)	7006.0	NM_007856	13360.0	Mm.249342	NM_007856	ENSMUSG00000058454	Dhcr7	AA409147	7-dehydrocholesterol reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103945897-4	chr14	103945412	103946412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E2|LTR|ERVL-MaLR	81230.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25180649-4	chr2	25180133	25181133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025980)	promoter-TSS (NM_025980)	-125.0	NM_025980	67122.0	Mm.46539	NM_025980	ENSMUSG00000078202	Nrarp	2700054M22Rik	Notch-regulated ankyrin repeat protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-59033656-4	chr17	59033166	59034166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20344.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37376399-3	chr10	37375894	37376894	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-237468.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16688823-4	chr1	16688311	16689311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159711, intron 1 of 4)	intron (NM_001159711, intron 1 of 4)	355.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	35.0	86.0	91.5	48.0	63.5	88.0
Merged-chr7-30184095-4	chr7	30183588	30184588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009944)	promoter-TSS (NM_009944)	-83.0	NM_009944	12865.0	Mm.423030	NM_009944	ENSMUSG00000074218	Cox7a1	COX7A|COX7AH|COX7AM	cytochrome c oxidase subunit VIIa 1	protein-coding	41.5	123.0	59.5	37.0	128.5	53.0
Merged-chr15-44619146-4	chr15	44618656	44619656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019480)	promoter-TSS (NM_019480)	-71.0	NM_001357690	55960.0	Mm.287896	NM_019480	ENSMUSG00000022339	Ebag9	AI835379|Rcas1	estrogen receptor-binding fragment-associated gene 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36747957-4	chr16	36747459	36748459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37003.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58211574-4	chr15	58211078	58212078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026346, intron 1 of 8)	intron (NM_026346, intron 1 of 8)	3314.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-82974431-4	chr10	82973906	82974906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-11091.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	0.0	6.5	2.0	0.0	11.5	4.5
Merged-chr2-157500592-4	chr2	157500087	157501087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59491.0	NM_001291129	18111.0	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81136813-4	chr13	81136338	81137338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	172764.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124723251-2	chr6	124722751	124723751	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077705, intron 11 of 15)	B1_Mur1|SINE|Alu	-4861.0	NR_029792	723944.0		NR_029792	ENSMUSG00000065462	Mir200c	Mirn200c|mir-200c	microRNA 200c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60777407-4	chr11	60776921	60777921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175491)	promoter-TSS (NM_175491)	-56.0	NM_009410	21975.0	Mm.10708	NM_009410	ENSMUSG00000002814	Top3a	-	topoisomerase (DNA) III alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126259668-4	chr4	126259174	126260174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2731.0	NM_013718	27096.0	Mm.8392	NM_013718	ENSMUSG00000028847	Trappc3	1110058K12Rik|AI835942|AU019197|Bet3	trafficking protein particle complex 3	protein-coding	23.0	93.0	47.0	46.5	95.5	45.5
Merged-chr16-11174835-4	chr16	11174377	11175377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027502, intron 1 of 22)	intron (NR_027502, intron 1 of 22)	1516.0	NR_027502	106205.0	Mm.226860	NM_145931	ENSMUSG00000037965	Zc3h7a	A430104C18Rik|AI447294|AW556219|HSPC055|Zc3h7|Zc3hdc7	zinc finger CCCH type containing 7 A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-45377561-3	chr16	45377057	45378057	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31496.0	NM_001358443	17470.0	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	3.5	2.5	0.5	8.5	7.0	27.0
Merged-chr10-79984398-4	chr10	79983950	79984950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001003949)	promoter-TSS (NM_001003949)	-190.0	NM_001003949	216157.0	Mm.29442	NM_001003949	ENSMUSG00000013858	Tmem259	AC087114.7gm2|ORF61|R32184_3|mFLJ00277	transmembrane protein 259	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40276110-4	chr10	40275615	40276615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18403.0	NM_001359492	67371.0	Mm.64104	NM_026113	ENSMUSG00000019837	Gtf3c6	2410016F19Rik|AU019813	general transcription factor IIIC, polypeptide 6, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125388639-3	chr5	125388197	125389197	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019639, intron 1 of 1)	PB1D9|SINE|Alu	1320.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43137997-4	chr17	43137498	43138498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20293.0	NR_045155	545207.0	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	74.0	139.5	95.0	77.0	145.0	101.0
Merged-chr12-106034472-4	chr12	106033966	106034966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029843, intron 1 of 13)	intron (NM_001029843, intron 1 of 13)	24203.0	NM_001029843	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	0.0	2.5	3.0	0.0	3.5	2.5
Merged-chr9-22307727-4	chr9	22307208	22308208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145612)	promoter-TSS (NM_145612)	-70.0	NM_145612	235050.0	Mm.306038	NM_145612	ENSMUSG00000066829	Zfp810	BC005471	zinc finger protein 810	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-100431898-4	chr3	100431401	100432401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040543, intron 2 of 2)	intron (NR_040543, intron 2 of 2)	5496.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	8.0	8.5	13.5	5.5	9.5	14.5
Merged-chr16-91538205-4	chr16	91537719	91538719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8875.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	87.0	288.5	242.0	58.0	87.5	88.0
Merged-chr7-114066914-4	chr7	114066359	114067359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	50922.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	0.5	15.0	1.5	1.5	8.5	5.5
Merged-chr17-27565837-4	chr17	27565340	27566340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001002895)	promoter-TSS (NM_001002895)	-113.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	1.0	8.0	8.0	2.5	23.5	16.0
Merged-chr13-34691260-4	chr13	34690759	34691759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38336.0	NR_105041	101056149.0	Mm.421309	NR_105041	ENSMUSG00000086786	Gm15908	-	predicted gene 15908	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4335828-4	chr8	4335325	4336325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033527, intron 2 of 5)	intron (NR_033527, intron 2 of 5)	10615.0	NR_033527	20300.0	Mm.7275	NM_009138	ENSMUSG00000023235	Ccl25	A130072A22Rik|AI852536|CKb15|Scya25|TECK	chemokine (C-C motif) ligand 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101734400-2	chr13	101733900	101734900	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	33817.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78550809-4	chr11	78550317	78551317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133706)	promoter-TSS (NM_133706)	-82.0	NM_133706	69071.0	Mm.29431	NM_133706	ENSMUSG00000037278	Tmem97	1810014L12Rik|AI115531|AL022956|D11Bhm182e	transmembrane protein 97	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65957837-2	chr3	65957337	65958337	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_019937, exon 1 of 11)	exon (NM_019937, exon 1 of 11)	412.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	45.0	97.0	110.5	51.0	110.0	113.0
Merged-chr9-89827146-4	chr9	89826628	89827628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040735, exon 1 of 6)	non-coding (NR_040735, exon 1 of 6)	609.0	NR_040735	74700.0	Mm.159306	NR_040735	ENSMUSG00000098627	4930524O08Rik	-	RIKEN cDNA 4930524O08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr6-124930905-4	chr6	124930399	124931399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170341)	promoter-TSS (NM_001170341)	-489.0	NM_145385	30853.0	Mm.29737	NM_145385	ENSMUSG00000030120	Mlf2	AI256856|AU018944|C77284	myeloid leukemia factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-60226659-4	chr19	60226152	60227152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358271)	promoter-TSS (NM_001358271)	49.0	NR_152391	76539.0	Mm.290183	NM_029648	ENSMUSG00000057858	Fam204a	2310065H12Rik|2610015K05Rik|D19Ertd737e	family with sequence similarity 204, member A	protein-coding	43.0	114.0	119.5	44.5	178.5	126.0
Merged-chr1-182341139-4	chr1	182340660	182341660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175127, intron 1 of 4)	CpG	446.0	NM_175127	67948.0	Mm.30737	NM_175127	ENSMUSG00000047539	Fbxo28	4833428J17Rik|5730505P19Rik|D1Ertd578e|Fbx28|mKIAA0483	F-box protein 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-81706330-4	chr17	81705828	81706828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	32059.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21601722-2	chr9	21601222	21602222	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	6607.0	NR_003372	666043.0	Mm.247282	NR_003372		Gm7904	EG666043	predicted gene 7904	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-183388949-4	chr1	183388453	183389453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277959)	promoter-TSS (NM_001277959)	-32.0	NM_001277959	21339.0	Mm.383556	NM_021466	ENSMUSG00000072258	Taf1a	TAFI48|mTAFI48	TATA-box binding protein associated factor, RNA polymerase I, A	protein-coding	0.0	1.0	2.0	0.0	1.5	5.5
Merged-chr11-59505608-2	chr11	59505108	59506108	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_135273)	promoter-TSS (NR_135273)	-45.0	NR_135273	74476.0	Mm.440257	NR_015585	ENSMUSG00000072893	4933439C10Rik	2610028M21Rik	RIKEN cDNA 4933439C10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20893574-2	chr9	20893074	20894074	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_016876)	TTS (NM_016876)	5016.0	NM_016876	53356.0	Mm.427309	NM_016876	ENSMUSG00000070319	Eif3g	44kDa|D0Jmb4|Eif3s4|TU-189B2|eIF3-p44|p44	eukaryotic translation initiation factor 3, subunit G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114676028-3	chr11	114675527	114676527	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	559.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37620078-7	chr13	37619567	37620567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-205971.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156324375-4	chr2	156323861	156324861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027585, intron 2 of 12)	intron (NM_027585, intron 2 of 12)	-11657.0	NM_020255	19018.0	Mm.389346	NM_020255	ENSMUSG00000046229	Scand1	2310003H23Rik|Leap1|PGC-2|Ppargc2	SCAN domain-containing 1	protein-coding	67.0	163.0	104.5	15.5	71.0	42.5
Merged-chr14-73386795-4	chr14	73386294	73387294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1505.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6777847-2	chr17	6777347	6778347	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 1 of 12)	B3|SINE|B2	4933.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96718592-4	chr9	96718105	96719105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175537, intron 1 of 2)	MIRb|SINE|MIR	840.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-95624512-4	chr1	95624048	95625048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009183, intron 4 of 4)	intron (NM_009183, intron 4 of 4)	43046.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55389880-4	chr12	55389373	55390373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310583, intron 1 of 6)	intron (NM_001310583, intron 1 of 6)	5651.0	NM_001310583	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132212269-4	chr4	132211772	132212772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145393)	promoter-TSS (NM_145393)	-16.0	NM_145393	213541.0	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH domain family 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-115693682-4	chr3	115693180	115694180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	21375.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	11.0	18.5	9.5	5.0	5.0	5.5
Merged-chr10-51455982-4	chr10	51455477	51456477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24635.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-149380287-4	chr3	149379788	149380788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105551.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26977115-4	chr8	26976618	26977618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001101502)	promoter-TSS (NM_001101502)	-218.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32878961-2	chr2	32878461	32879461	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146119, intron 1 of 13)	MIR3|SINE|MIR	2827.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39922870-4	chr1	39922355	39923355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 2 of 29)	intron (NM_001252202, intron 2 of 29)	21942.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-105650885-4	chr7	105650396	105651396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153392, intron 2 of 3)	intron (NR_153392, intron 2 of 3)	10451.0	NM_001360054	14356.0	Mm.220330	NM_019502	ENSMUSG00000089847	Timm10b	Fxc1|Tim10b|Tim9b	translocase of inner mitochondrial membrane 10B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40479471-2	chr9	40478971	40479971	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 1 of 20)	intron (NM_001357617, intron 1 of 20)	-23707.0	NM_172768	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.0	4.5	0.0	8.5	1.0	3.0
Merged-chr18-4303316-4	chr18	4302809	4303809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49644.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85513844-4	chr12	85513361	85514361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39971.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80785240-4	chr12	80784748	80785748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5284.0	NM_178682	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-97757451-4	chr4	97756940	97757940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-20186.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-176826322-4	chr1	176825807	176826807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 3 of 18)	intron (NM_001357390, intron 3 of 18)	9826.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	46.5	74.5	75.0	50.0	83.0	58.5
Merged-chr17-44105783-4	chr17	44105306	44106306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199016)	promoter-TSS (NM_199016)	2.0	NM_199016	224794.0	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	44.0	171.5	89.0	70.5	139.5	68.0
Merged-chr16-91354761-4	chr16	91354259	91355259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18024.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129515178-4	chr2	129514687	129515687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177653, intron 1 of 6)	intron (NM_177653, intron 1 of 6)	21415.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	161.5	325.5	182.0	120.5	240.5	185.0
Merged-chr7-122705997-4	chr7	122705504	122706504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019430, intron 1 of 3)	L1M2|LINE|L1	34260.0	NM_019430	54376.0	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4188740-2	chr11	4188240	4189240	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	1907.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164460909-4	chr2	164460441	164461441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025575)	promoter-TSS (NM_025575)	-30.0	NM_025575	66460.0	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	2.5	4.0	9.0	1.0	7.5	11.0
Merged-chr14-31386251-4	chr14	31385744	31386744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 3 of 7)	intron (NM_001347585, intron 3 of 7)	31433.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-16879930-4	chr12	16879430	16880430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15048.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	62.0	80.0	50.5	58.0	128.0	82.0
Merged-chr16-35981704-4	chr16	35981189	35982189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-1674.0	NM_008465	16646.0	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25211426-4	chr2	25210927	25211927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021393)	promoter-TSS (NM_021393)	62.0	NM_021393	58202.0	Mm.116418	NM_021393	ENSMUSG00000013465	Nelfb	A730008L03Rik|AB041607|AI663983|Cobra1|Nelf-b	negative elongation factor complex member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52713721-4	chr6	52713171	52714171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025816)	promoter-TSS (NM_025816)	-58.0	NM_025816	52440.0	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-63913274-2	chr7	63912774	63913774	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	RMER17C|LTR|ERVK	-3583.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	53.0	176.0	79.0	35.5	118.0	61.0
Merged-chr7-30588910-4	chr7	30588409	30589409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290573)	promoter-TSS (NM_001290573)	-183.0	NM_029274	75410.0	Mm.168688	NM_029274	ENSMUSG00000006307	Kmt2b	2610014H22Rik|Mll2|Wbp7|mKIAA0304	lysine (K)-specific methyltransferase 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128733706-4	chr4	128733216	128734216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195083, intron 1 of 6)	intron (NM_001195083, intron 1 of 6)	6145.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	71.5	165.0	92.0	48.5	132.5	77.5
Merged-chr2-121447987-2	chr2	121447487	121448487	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1211.0	NM_011354	378702.0	Mm.262252	NM_011354	ENSMUSG00000074884	Serf2	C80083|Msmac1l|m4F5rel	small EDRK-rich factor 2	protein-coding	38.5	81.5	80.0	56.0	134.0	81.5
Merged-chr6-28261971-4	chr6	28261448	28262448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081678)	promoter-TSS (NM_001081678)	-347.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-71230889-3	chr11	71230405	71231405	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040696)	promoter-TSS (NM_001040696)	-172.0	NM_001040696	637515.0	Mm.390402	NM_001039680	ENSMUSG00000070390	Nlrp1b	Nalp1b	NLR family, pyrin domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35813333-4	chr17	35812823	35813823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8390.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41019161-4	chr13	41018662	41019662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360770, intron 3 of 4)	intron (NM_001360770, intron 3 of 4)	2912.0	NM_001360770	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	12.5	26.0	25.0	9.0	26.0	23.5
Merged-chr16-8829303-2	chr16	8828803	8829803	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081400)	promoter-TSS (NM_001081400)	-797.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80290176-4	chr17	80289685	80290685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194269)	promoter-TSS (NM_194269)	-27.0	NM_194269	378462.0	Mm.45208	NM_194269	ENSMUSG00000045257	Morn2	Mopt	MORN repeat containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66746583-4	chr15	66746077	66747077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 34 of 47)	intron (NM_009375, intron 34 of 47)	75807.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	4.0	7.5	11.0	8.0	12.5	9.5
Merged-chr19-5944380-4	chr19	5943882	5944882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 13 of 17)	intron (NM_001164057, intron 13 of 17)	-19566.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	10.0	15.5	7.0	7.5	6.0	17.0
Merged-chr17-84126330-4	chr17	84125838	84126838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47678.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87769601-1	chr11	87769101	87770101	+	1000.0	f1_balb.idr	intron (NM_172449, intron 12 of 31)	intron (NM_172449, intron 12 of 31)	9060.0	NM_172449	207777.0	Mm.342019	NM_172449	ENSMUSG00000034156	Tspoap1	Bzrap1|D230016K05|PRAX-1|mKIAA0612	TSPO associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134796584-4	chr6	134796080	134797080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151455, exon 1 of 2)	non-coding (NR_151455, exon 1 of 2)	930.0	NR_151455	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	9.0	71.5	27.5	24.5	39.0	19.5
Merged-chr16-27374278-4	chr16	27373765	27374765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4026.0	NM_198166	224065.0	Mm.326918	NM_198166	ENSMUSG00000056423	Uts2b	Gm538|U2B|Urp|Uts2d	urotensin 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90224058-4	chr5	90223537	90224537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033310)	promoter-TSS (NM_001033310)	-41.0	NM_001163456	231430.0	Mm.319697	NM_001033310	ENSMUSG00000035505	Cox18	BC038311	cytochrome c oxidase assembly protein 18	protein-coding	26.0	129.0	69.0	30.0	67.0	78.0
Merged-chr7-44357863-2	chr7	44357363	44358363	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001034115, exon 25 of 25)	3' UTR (NM_001034115, exon 25 of 25)	17167.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136804423-4	chr6	136803938	136804938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175652)	promoter-TSS (NM_175652)	-7.0	NM_175652	320332.0	Mm.246720	NM_175652	ENSMUSG00000096010	Hist4h4	B130044J01Rik	histone cluster 4, H4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4508142-4	chr2	4507631	4508631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 5 of 23)	intron (NM_001177843, intron 5 of 23)	-51623.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38644451-4	chr15	38643941	38644941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17463.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-27174710-4	chr8	27174203	27175203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080813)	promoter-TSS (NM_001080813)	-57.0	NM_001080813	75767.0	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-15720918-8	chr6	15720466	15721466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 1 of 4)	CpG	305.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-55208980-4	chr9	55208460	55209460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028049)	promoter-TSS (NM_028049)	25.0	NM_028049	71999.0	Mm.276429	NM_028049	ENSMUSG00000032309	Fbxo22	0610033L19Rik|1600016C16Rik	F-box protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3355965-4	chr2	3355390	3356390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145921, intron 3 of 7)	intron (NM_145921, intron 3 of 7)	10679.0	NM_145921	99035.0	Mm.13808	NM_145921	ENSMUSG00000026645	Olah	AI607300|E230009B14Rik|Thedc1	oleoyl-ACP hydrolase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129229250-2	chr6	129228750	129229750	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8795.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-63375005-2	chr17	63374505	63375505	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 5 of 8)	Lx9|LINE|L1	-62032.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-7169469-4	chr17	7168994	7169994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011299)	promoter-TSS (NM_011299)	-621.0	NM_011299	20112.0	Mm.268383	NM_011299	ENSMUSG00000023809	Rps6ka2	90kDa|D17Wsu134e|Rps6ka-rs1|Rsk3|p90rsk|pp90rsk	ribosomal protein S6 kinase, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9350032-4	chr3	9349534	9350534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53044.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6292556-4	chr11	6292046	6293046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252288)	promoter-TSS (NM_001252288)	-12.0	NM_001252288	18293.0	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90772454-4	chr5	90771956	90772956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019932)	promoter-TSS (NM_019932)	21.0	NM_019932	56744.0	Mm.332490	NM_019932	ENSMUSG00000029373	Pf4	Cxcl4|Scyb4	platelet factor 4	protein-coding	51.0	52.0	26.5	22.0	74.0	33.5
Merged-chr13-55600009-4	chr13	55599511	55600511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001311137, exon 1 of 5)	5' UTR (NM_001311137, exon 1 of 5)	115.0	NM_001311137	218271.0	Mm.139825	NM_146045	ENSMUSG00000021504	B4galt7	-	xylosylprotein beta1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116059290-4	chr9	116058788	116059788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028638, intron 14 of 14)	B3A|SINE|B2	116075.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30469257-2	chr2	30468757	30469757	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4942.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73603979-4	chr13	73603459	73604459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146047)	promoter-TSS (NM_146047)	-43.0	NM_146047	218335.0	Mm.30099	NM_146047	ENSMUSG00000021610	Clptm1l	C130052I12Rik|Crr9	CLPTM1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82691606-2	chr18	82691106	82692106	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177832, intron 1 of 29)	intron (NM_177832, intron 1 of 29)	1128.0	NM_177832	329002.0	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64482300-4	chr1	64481840	64482840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger15a|DNA|TcMar-Tigger	-50464.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58103973-4	chr11	58103474	58104474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356477)	promoter-TSS (NM_001356477)	4.0	NM_026949	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	55.0	137.5	108.5	59.0	203.0	126.0
Merged-chr10-118100798-4	chr10	118100293	118101293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40994.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	3.0	3.0	11.5	10.0	8.5	9.0
Merged-chr12-4188388-4	chr12	4187896	4188896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 3 of 21)	intron (NM_001159537, intron 3 of 21)	45569.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-103114337-4	chr4	103113852	103114852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146254)	promoter-TSS (NM_146254)	-38.0	NM_027696	71148.0	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43882286-4	chr5	43881792	43882792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	PB1D10|SINE|Alu	13483.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	43.5	95.0	66.5	39.5	63.0	46.5
Merged-chr13-74493998-4	chr13	74493494	74494494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146231)	promoter-TSS (NM_146231)	-44.0	NM_146231	235956.0		NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59653063-4	chr15	59652569	59653569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144549, intron 2 of 2)	intron (NM_144549, intron 2 of 2)	4415.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155404837-4	chr2	155404330	155405330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242558, intron 9 of 12)	MIRb|SINE|MIR	22974.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	135.0	270.5	229.5	183.0	259.0	244.0
Merged-chr10-39960287-4	chr10	39959793	39960793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001173500)	promoter-TSS (NM_001173500)	-140.0	NM_001173500	100041085.0	Mm.332530	NM_001173500	ENSMUSG00000071335	Mfsd4b3	G630090E17Rik|Naglt1c	major facilitator superfamily domain containing 4B3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135406369-4	chr4	135405867	135406867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8140.0	NM_145555	230822.0	Mm.35548	NM_145555	ENSMUSG00000043924	Ncmap	A330049M08Rik|AA545175|Mp11	noncompact myelin associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-53667090-2	chr9	53666602	53667602	+	1000.0	f0_balb.idr|f0_c57.idr	exon (NM_027807, exon 1 of 19)	exon (NM_027807, exon 1 of 19)	405.0	NM_001161618	75717.0	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57300968-2	chr17	57300468	57301468	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 9 of 25)	B4|SINE|B4	21868.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64156396-4	chr5	64155892	64156892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3868.0	NM_019636	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.0	1.5	5.0	9.0	0.0	1.0
Merged-chr7-110796803-4	chr7	110796293	110797293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009667, intron 6 of 14)	intron (NM_009667, intron 6 of 14)	24189.0	NM_009667	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62602838-4	chr11	62602409	62603409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030738)	promoter-TSS (NR_030738)	32.0	NR_030738	69221.0	Mm.270874	NR_030738	ENSMUSG00000086841	2410006H16Rik	-	RIKEN cDNA 2410006H16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-46615800-4	chr7	46615327	46616327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013789, intron 7 of 10)	MIR3|SINE|MIR	23980.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103891023-4	chr14	103890557	103891557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46581.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79139032-2	chr8	79138532	79139532	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 8 of 14)	RSINE1|SINE|B4	109551.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-48788984-4	chr7	48788499	48789499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028031)	promoter-TSS (NM_028031)	-4.0	NM_028031	243983.0	Mm.279116	NM_028031	ENSMUSG00000030471	Zdhhc13	2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4	zinc finger, DHHC domain containing 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80170134-4	chr18	80169668	80170668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-16071.0	NR_131039	105246506.0	Mm.392326	NR_131039		LOC105246506	-	uncharacterized LOC105246506	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44107454-4	chr19	44106903	44107903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007700)	promoter-TSS (NM_007700)	74.0	NM_007700	12675.0	Mm.3996	NM_007700	ENSMUSG00000025199	Chuk	AI256658|Chuk1|Fbx24|Fbxo24|IKBKA|IKK alpha|IKK1|Ikka|NFKBIKA	conserved helix-loop-helix ubiquitous kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155357507-4	chr2	155357024	155358024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004721)	promoter-TSS (NM_001004721)	-100.0	NM_001004721	228812.0	Mm.5434	NM_001004721	ENSMUSG00000038383	Pigu	5430426F17Rik|BC028278|Cdc91l1	phosphatidylinositol glycan anchor biosynthesis, class U	protein-coding	0.0	12.0	12.0	1.0	5.5	5.0
Merged-chr13-5592639-4	chr13	5592126	5593126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	265466.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98708722-4	chr11	98708215	98709215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361995, intron 19 of 25)	L1MB2|LINE|L1	7402.0	NM_009971	12985.0	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108641187-4	chr12	108640687	108641687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	5434.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64375888-4	chr13	64375392	64376392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5372.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	29.5	21.5	18.5	23.0	11.0	23.0
Merged-chr6-100833562-4	chr6	100833080	100834080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182939)	promoter-TSS (NM_182939)	-58.0	NM_182939	232314.0	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding	5.0	12.5	11.5	6.5	15.0	16.0
Merged-chr5-73286806-4	chr5	73286300	73287300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2616.0	NR_040687	72276.0	Mm.271215	NR_040687	ENSMUSG00000100175	1700025M24Rik	-	RIKEN cDNA 1700025M24 gene	ncRNA	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-50053948-3	chr18	50053448	50054448	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155293)	promoter-TSS (NR_155293)	-286.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	66.5	188.5	127.0	69.0	121.5	89.0
Merged-chr1-161070776-4	chr1	161070286	161071286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131028)	promoter-TSS (NR_131028)	19.0	NR_131029	70454.0	Mm.248212	NM_027429	ENSMUSG00000026708	Cenpl	2610300B10Rik|AW121806|AW550697|CENP-L	centromere protein L	protein-coding	58.0	186.0	116.0	72.0	136.5	101.5
Merged-chr16-38395311-4	chr16	38394802	38395802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_134102)	TTS (NM_134102)	33112.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32226502-4	chr11	32225996	32226996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010822)	promoter-TSS (NM_010822)	-9.0	NM_010822	268395.0	Mm.263161	NM_010822	ENSMUSG00000020287	Mpg	9830006D05|AI326268|APNG|Aag|Mid1	N-methylpurine-DNA glycosylase	protein-coding	1.5	7.0	0.0	2.5	4.0	6.5
Merged-chr4-129820710-4	chr4	129820205	129821205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164745)	promoter-TSS (NM_001164745)	-3.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	39.0	114.0	101.5	39.0	102.5	100.0
Merged-chr2-71027097-4	chr2	71026594	71027594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 1 of 9)	RLTR30B_MM|LTR|ERV1	-8720.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100674155-4	chr5	100673555	100674555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027978, exon 1 of 7)	exon (NM_027978, exon 1 of 7)	201.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	16.0	61.5	68.5	63.0	90.0	87.0
Merged-chr6-124834699-4	chr6	124834154	124835154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013538)	TTS (NM_013538)	4478.0	NM_013538	14793.0	Mm.285723	NM_013538	ENSMUSG00000023505	Cdca3	2410005A12Rik|C8|Grcc8|Tome-1	cell division cycle associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136142528-3	chr1	136142035	136143035	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	11145.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-21091186-4	chr2	21090694	21091694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114171.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-181842460-4	chr1	181841958	181842958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133815)	promoter-TSS (NM_133815)	-57.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86582676-4	chr1	86582202	86583202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172974)	promoter-TSS (NM_172974)	83.0	NM_001360816	18582.0	Mm.12925	NM_008801	ENSMUSG00000026239	Pde6d	AI841218|PrBP/delta	phosphodiesterase 6D, cGMP-specific, rod, delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128127451-4	chr2	128126965	128127965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284410)	promoter-TSS (NM_001284410)	-110.0	NM_001284410	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58246251-4	chr9	58245759	58246759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008884, intron 2 of 7)	intron (NM_008884, intron 2 of 7)	3527.0	NM_008884	18854.0	Mm.392123	NM_008884	ENSMUSG00000036986	Pml	1200009E24Rik|AI661194|Trim19	promyelocytic leukemia	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-53705709-5	chr9	53705171	53706171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175562, intron 1 of 1)	CpG	561.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29869078-4	chr2	29868557	29869557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207298)	promoter-TSS (NM_207298)	-437.0	NM_207298	99151.0	Mm.296336	NM_207298	ENSMUSG00000039787	Cercam	2600006K01Rik|AL024097|Ceecam1	cerebral endothelial cell adhesion molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3617363-4	chr7	3616866	3617866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025348)	promoter-TSS (NM_025348)	-7.0	NM_025348	66091.0	Mm.17851	NM_025348	ENSMUSG00000035674	Ndufa3	1010001M12Rik|1700022J01Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3	protein-coding	11.0	4.0	13.0	2.5	11.5	9.5
Merged-chr8-120162674-2	chr8	120162174	120163174	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163761, exon 12 of 12)	3' UTR (NM_001163761, exon 12 of 12)	14795.0	NM_001033980	436062.0	Mm.334852	NM_001033980	ENSMUSG00000042269	Fam92b	1700120B06Rik	family with sequence similarity 92, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63128562-2	chr14	63128062	63129062	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	6100.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180850887-4	chr1	180850390	180851390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145943)	promoter-TSS (NM_145943)	-261.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167949393-4	chr2	167948892	167949892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	17065.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43568959-2	chr17	43568454	43569454	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	503.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	17.5	45.5	58.5	46.0	79.5	79.5
Merged-chr15-86134693-1	chr15	86134193	86135193	+	1000.0	f1_c57bl6.idr	intron (NM_172611, intron 17 of 18)	intron (NM_172611, intron 17 of 18)	-51035.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	3.5	1.5	2.5	0.0	0.0	0.0
Merged-chr7-73527434-4	chr7	73526931	73527931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	14315.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29805885-6	chr19	29805336	29806336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172836, exon 1 of 8)	exon (NM_172836, exon 1 of 8)	173.0	NM_172836	240613.0	Mm.313351	NM_172836	ENSMUSG00000046138	9930021J03Rik	Gm9832|mKIAA2026	RIKEN cDNA 9930021J03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-62653255-4	chr13	62652806	62653806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29124.0	NM_173381	211378.0	Mm.247448	NM_173381	ENSMUSG00000072066	6720489N17Rik	9330128I06	RIKEN cDNA 6720489N17 gene	protein-coding	4.5	17.0	17.0	3.0	2.5	4.0
Merged-chr11-69113228-2	chr11	69112726	69113726	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7227.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	0.0	0.0	4.0	0.0	1.0	3.0
Merged-chr3-16180655-4	chr3	16180180	16181180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD3|LINE|L1	-2485.0	NM_001358043	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97412263-4	chr11	97411766	97412766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37894.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-30608248-4	chr15	30607730	30608730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-430896.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	44.5	30.5	52.0	26.0	45.0	28.0
Merged-chr7-100159705-4	chr7	100159223	100160223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026010, exon 1 of 2)	exon (NM_026010, exon 1 of 2)	446.0	NM_026010	67164.0	Mm.46777	NM_026010	ENSMUSG00000030725	Lipt2	2610209A20Rik	lipoyl(octanoyl) transferase 2 (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-67386154-4	chr1	67385653	67386653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	263126.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36512424-4	chr18	36511908	36512908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010415, intron 3 of 5)	intron (NM_010415, intron 3 of 5)	3397.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	26.0	88.5	78.5	46.0	53.5	54.5
Merged-chr7-126503536-4	chr7	126503022	126504022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183020)	promoter-TSS (NM_183020)	-85.0	NM_183020	233871.0	Mm.231450	NM_183020	ENSMUSG00000032637	Atxn2l	A2D|A2LG|A2RP|A2lp|Atxnl2	ataxin 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4475257-4	chr16	4474748	4475748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	47827.0	NM_001347162	106393.0	Mm.35811	NM_175347	ENSMUSG00000022519	Srl	9830004M20Rik|AW108387|sar	sarcalumenin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157134436-2	chr2	157133936	157134936	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001139520, intron 1 of 16)	intron (NM_001139520, intron 1 of 16)	786.0	NM_001139520	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116608594-4	chr7	116608106	116609106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	104237.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139199279-4	chr4	139198787	139199787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	5176.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	133.0	286.5	179.5	125.5	321.0	198.5
Merged-chr12-95748961-4	chr12	95748462	95749462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	56736.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171006550-4	chr1	171006062	171007062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12364.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102815445-4	chr2	102815009	102816009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 13 of 13)	intron (NM_001039150, intron 13 of 13)	-68749.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	53.5	81.0	76.0	62.0	98.5	98.5
Merged-chr6-40471407-4	chr6	40470906	40471906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286664)	promoter-TSS (NM_001286664)	-9.0	NM_212468	381760.0	Mm.276356	NM_028358	ENSMUSG00000029911	Ssbp1	2810480P10Rik|G630031O20Rik|MtSSB|mtDBP	single-stranded DNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-53377402-4	chr13	53376905	53377905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009269)	promoter-TSS (NM_009269)	-44.0	NM_009269	268656.0	Mm.240336	NM_009269	ENSMUSG00000021468	Sptlc1	AW552086|C77762|E030036H05|Lcb1|SPT1	serine palmitoyltransferase, long chain base subunit 1	protein-coding	57.5	103.0	54.0	34.5	59.5	61.5
Merged-chr1-55808886-4	chr1	55808373	55809373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122368.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	26.0	45.5	57.0	33.0	29.0	19.5
Merged-chr19-29325341-4	chr19	29324834	29325834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013754)	promoter-TSS (NM_013754)	-16.0	NM_013754	27356.0	Mm.306511	NM_013754	ENSMUSG00000050957	Insl6	RIF1	insulin-like 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102911792-4	chr14	102911292	102912292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70840.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6434064-2	chr15	6433564	6434564	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 10 of 13)	intron (NM_001008702, intron 10 of 13)	-11269.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81855140-4	chr7	81854650	81855650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3851.0	NR_111910	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	32.0	67.5	53.5	24.0	64.0	23.0
Merged-chr2-71212197-2	chr2	71211697	71212697	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347173, intron 1 of 17)	CpG	251.0	NM_010064	13427.0	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50508892-4	chr17	50508377	50509377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013880)	promoter-TSS (NM_013880)	-670.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	39.0	61.0	66.5	17.5	32.0	36.0
Merged-chr11-86995869-4	chr11	86995374	86996374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-2112.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51184970-4	chr3	51184483	51185483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2C1|LTR|ERVL	-39464.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	471.0	775.5	615.5	90.5	236.5	175.5
Merged-chr12-4545637-4	chr12	4545147	4546147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	21534.0	NR_136891	102634330.0	Mm.402324	NR_136891	ENSMUSG00000112422	Gm31938	-	predicted gene, 31938	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-22867220-4	chr17	22866743	22867743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110254)	promoter-TSS (NM_001110254)	-109.0	NM_001110254	240041.0	Mm.328828	NM_177358	ENSMUSG00000059142	Zfp945	A630033E08Rik|C730040L01Rik	zinc finger protein 945	protein-coding	0.0	4.0	2.5	2.5	1.0	2.0
Merged-chr19-11965554-4	chr19	11965045	11966045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033174)	promoter-TSS (NM_001033174)	-299.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-108301190-4	chr4	108300699	108301699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033634)	promoter-TSS (NM_001033634)	-109.0	NM_001033634	414872.0	Mm.426241	NM_001033634	ENSMUSG00000034636	Zyg11b	1110046I03Rik|2810482G21Rik|D4Mgi23|Gm431|mKIAA1730	zyg-ll family member B, cell cycle regulator	protein-coding	29.0	102.0	36.0	21.0	80.0	27.0
Merged-chr14-55681534-2	chr14	55681033	55682033	+	1000.0	f0_balb.idr|f0_c57.idr	exon (NM_145705, exon 1 of 9)	exon (NM_145705, exon 1 of 9)	284.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50345338-4	chr17	50344825	50345825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-51705.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	7.0	4.0	1.0	12.0	0.0	4.0
Merged-chr4-55591661-4	chr4	55591154	55592154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6BA|LTR|ERVK	-59179.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	7.0	10.5	10.5	3.5	2.0	2.5
Merged-chr5-72647775-4	chr5	72647288	72648288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081205)	promoter-TSS (NM_001081205)	-8.0	NM_001081205	70701.0	Mm.38884	NM_001081205	ENSMUSG00000067219	Nipal1	3830408G10Rik|Npal1	NIPA-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132316430-5	chr7	132316050	132317050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028578, exon 1 of 1)	non-coding (NR_028578, exon 1 of 1)	476.0	NM_001360768	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116581556-4	chr11	116581060	116582060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173755)	promoter-TSS (NM_173755)	-113.0	NM_173755	217342.0	Mm.243950	NM_173755	ENSMUSG00000020802	Ube2o	9630022H21|B230113M03Rik|E2-230K|mKIAA1734	ubiquitin-conjugating enzyme E2O	protein-coding	0.0	0.0	0.5	0.0	3.0	1.0
Merged-chr10-40317394-2	chr10	40316894	40317894	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT-int|LTR|ERVL-MaLR	-15206.0	NM_009665	11702.0	Mm.253533	NM_009665	ENSMUSG00000075232	Amd1	AdoMetDC|Amd-1|SAMDC|SAMDC 1|adoMetDC1	S-adenosylmethionine decarboxylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64089269-4	chr9	64088764	64089764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8503.0	NR_040743	76814.0	Mm.243771	NR_040743		Scarletltr	2600006L11Rik	Scarletltr, erythroid developmental long intergenic non-protein coding transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75757510-4	chr2	75757032	75758032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52869.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	16.0	15.5	25.0	23.0	12.0	5.0
Merged-chr4-70410478-4	chr4	70409970	70410970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145990)	promoter-TSS (NM_145990)	-35.0	NM_145990	214444.0	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-75124924-5	chr1	75124485	75125485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_194333)	TTS (NM_194333)	8905.0	NM_194333	22626.0	Mm.68157	NM_194333	ENSMUSG00000026205	Slc23a3	SVCT3|Yspl1	solute carrier family 23 (nucleobase transporters), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32163849-4	chr12	32163330	32164330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44508.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	29.0	80.5	78.0	28.5	37.5	19.0
Merged-chr13-9764543-4	chr13	9764049	9765049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347472)	promoter-TSS (NM_001347472)	-79.0	NM_001347472	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135439447-4	chr4	135438943	135439943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5638.0	NM_022980	53902.0	Mm.331970	NM_022980	ENSMUSG00000059713	Rcan3	AU041093|Csp3|Dscr1l2	regulator of calcineurin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-14705556-4	chr10	14705075	14706075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045824)	promoter-TSS (NR_045824)	-34.0	NR_045824	69412.0	Mm.259735	NR_045824	ENSMUSG00000019865	1700016L04Rik	-	RIKEN cDNA 1700016L04 gene	ncRNA	28.0	41.0	45.5	31.0	52.0	62.5
Merged-chr5-134232800-4	chr5	134232298	134233298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3173.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17882828-4	chr17	17882320	17883320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013521, intron 1 of 1)	intron (NM_013521, intron 1 of 1)	1119.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	12.0	111.0	66.0	17.0	69.0	40.0
Merged-chr2-12294279-4	chr2	12293802	12294802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001309, intron 2 of 29)	intron (NM_001001309, intron 2 of 29)	-6944.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91396478-2	chr16	91395978	91396978	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 7 of 7)	RSINE1|SINE|B4	-9757.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138542303-2	chr1	138541803	138542803	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 3 of 9)	intron (NM_021605, intron 3 of 9)	77454.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43273733-4	chr7	43273348	43274348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER54A|LTR|ERVL	39452.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120571054-4	chr9	120570578	120571578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025974)	promoter-TSS (NM_025974)	-439.0	NM_025974	67115.0	Mm.289810	NM_025974	ENSMUSG00000025794	Rpl14	3100001N19Rik|AA407502|AL022816|CAG-ISL-7|CTG-B33|L14	ribosomal protein L14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79878311-4	chr11	79877831	79878831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84056.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	6.5	23.5	28.5	32.5	18.0	23.0
Merged-chr1-64376579-4	chr1	64376069	64377069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-156235.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-65594383-4	chr6	65593893	65594893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001495, intron 2 of 7)	intron (NM_001001495, intron 2 of 7)	3995.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93590074-4	chr2	93589593	93590593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52341.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	0.0	21.0	9.0	7.0	14.5	5.0
Merged-chr15-99029065-4	chr15	99028542	99029542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009448)	promoter-TSS (NM_009448)	-849.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-145924908-4	chr3	145924392	145925392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009740, intron 1 of 2)	CpG	630.0	NM_009740	12042.0	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135478978-2	chr5	135478471	135479471	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_146001, intron 1 of 30)	B4|SINE|B4	66151.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140735499-4	chr5	140734988	140735988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	intron (NM_173405, intron 2 of 7)	11361.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-57577505-2	chr8	57577005	57578005	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 2 of 11)	intron (NM_001167981, intron 2 of 11)	65662.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75787045-4	chr14	75786573	75787573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026232)	promoter-TSS (NM_026232)	-36.0	NM_026232	67554.0	Mm.46067	NM_026232	ENSMUSG00000022003	Slc25a30	4933433D23Rik|AV025504|AV221431|AW319655|KMCP1	solute carrier family 25, member 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-33929949-6	chr8	33929495	33930495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286168)	promoter-TSS (NM_001286168)	-132.0	NM_001042675	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	9.5	51.5	30.5	6.5	20.0	11.0
Merged-chr13-111806529-2	chr13	111806029	111807029	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	2464.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	38.5	122.5	68.5	19.0	61.5	29.5
Merged-chr8-116631209-2	chr8	116630709	116631709	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 1 of 6)	intron (NM_029441, intron 1 of 6)	101782.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-100840214-4	chr10	100839709	100840709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98574.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100617796-2	chr11	100617296	100618296	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019795, intron 1 of 13)	PB1D10|SINE|Alu	2372.0	NM_019795	56354.0	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	0.5	4.0	1.0	0.5	4.0	1.0
Merged-chr5-125358400-4	chr5	125357883	125358883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17289.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	18.0	45.0	26.0	7.0	20.5	19.5
Merged-chr13-111942099-4	chr13	111941609	111942609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	74173.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-42344410-4	chr6	42343976	42344976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5352.0	NM_001289619	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184675931-4	chr1	184675414	184676414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36583.0	NR_040627	74971.0	Mm.410816	NR_040627	ENSMUSG00000092578	4930488B22Rik	-	RIKEN cDNA 4930488B22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-32159846-4	chr14	32159316	32160316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033988)	promoter-TSS (NM_001033988)	-71.0	NM_001033988	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120666491-4	chr4	120666009	120667009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019563)	promoter-TSS (NM_019563)	-54.0	NM_019563	56222.0	Mm.272646	NM_019563	ENSMUSG00000070803	Cited4	MRG-2|Mrg2	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	protein-coding	0.0	0.0	6.0	0.0	2.0	4.0
Merged-chr10-42478553-4	chr10	42478078	42479078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145743)	promoter-TSS (NM_145743)	-13.0	NM_145743	215951.0	Mm.89646	NM_145743	ENSMUSG00000038302	Afg1l	CG8520|Lace1	AFG1 like ATPase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107441195-4	chr11	107440709	107441709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	29511.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27850745-5	chr17	27850243	27851243	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011432, intron 5 of 5)	intron (NM_011432, intron 5 of 5)	-5764.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	66.5	184.0	147.5	77.0	186.5	144.0
Merged-chr1-195092319-4	chr1	195091805	195092805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132621)	promoter-TSS (NR_132621)	-57.0	NM_010778	17221.0	Mm.12884	NM_010778	ENSMUSG00000016493	Cd46	Mcp	CD46 antigen, complement regulatory protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37857938-4	chr13	37857451	37858451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	-30483.0	NR_033218	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135517104-4	chr1	135516620	135517620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173437, intron 3 of 28)	intron (NM_173437, intron 3 of 28)	-62437.0	NR_049188	100885827.0		NR_049188	ENSMUSG00000093515	Mir1231	Gm23720|mir-1231|mmu-mir-1231	microRNA 1231	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103207652-4	chr3	103207148	103208148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35993.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	1.0	4.0	10.5	1.5	6.5	11.0
Merged-chr12-102785173-2	chr12	102784673	102785673	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172806, exon 12 of 12)	exon (NM_172806, exon 12 of 12)	27198.0	NM_025666	66622.0	Mm.34261	NM_025666	ENSMUSG00000041712	Ubr7	5730410I19Rik|AA589405|AW557761	ubiquitin protein ligase E3 component n-recognin 7 (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37348368-4	chr9	37347841	37348841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081429)	promoter-TSS (NM_001081429)	51.0	NM_001081429	245902.0	Mm.390150	NM_001081429	ENSMUSG00000034303	Ccdc15	A630039F14Rik|D030074L19	coiled-coil domain containing 15	protein-coding	38.0	62.0	71.0	29.0	52.0	42.0
Merged-chr11-115165140-4	chr11	115164640	115165640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012030, intron 1 of 5)	intron (NM_012030, intron 1 of 5)	1799.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	5.0	23.0	3.5	1.5	17.5	10.0
Merged-chr8-126826620-4	chr8	126826113	126827113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22407.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173742467-4	chr1	173741953	173742953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204910)	promoter-TSS (NM_001204910)	-644.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	187.0	417.5	350.5	204.0	335.5	287.5
Merged-chr6-113238663-4	chr6	113238168	113239168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362185, intron 1 of 16)	intron (NM_001362185, intron 1 of 16)	825.0	NR_155433	97287.0	Mm.197816	NM_026849	ENSMUSG00000030269	Mtmr14	1110061O04Rik|AW553738|C76151	myotubularin related protein 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-137411137-2	chr6	137410637	137411637	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 13 of 26)	intron (NM_011216, intron 13 of 26)	416.0	NM_001164403	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17640241-2	chr6	17639741	17640741	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007604, intron 1 of 9)	ID_B1|SINE|B4	3231.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	36.0	71.0	70.5	39.5	76.0	59.5
Merged-chr2-173021899-4	chr2	173021402	173022402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019547)	promoter-TSS (NM_019547)	0.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	6.0	31.0	30.5	10.5	44.0	32.0
Merged-chr15-102510799-4	chr15	102510311	102511311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358844)	promoter-TSS (NM_001358844)	-111.0	NM_001358844	26404.0	Mm.172897	NM_009582	ENSMUSG00000023050	Map3k12	DLK|MUK|Zpk	mitogen-activated protein kinase kinase kinase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37958753-4	chr13	37958247	37959247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	35461.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	73.5	277.0	177.5	93.0	237.5	205.5
Merged-chr2-162932423-4	chr2	162931916	162932916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026499, intron 2 of 5)	intron (NM_026499, intron 2 of 5)	908.0	NM_026499	67996.0	Mm.24042	NM_026499	ENSMUSG00000016921	Srsf6	1210001E11Rik|AI314910|AW146126|Sfrs6	serine/arginine-rich splicing factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5645094-1	chr19	5644594	5645594	+	1000.0	f1_c57bl6.idr	intron (NM_009045, intron 8 of 10)	B1_Mur2|SINE|Alu	7604.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	0.0	2.5	0.0	0.5	1.0	3.0
Merged-chr3-97991632-4	chr3	97991112	97992112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21926.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79028098-4	chr8	79027595	79028595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178267)	promoter-TSS (NM_178267)	-342.0	NM_001294279	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84066649-4	chr8	84066175	84067175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009055)	promoter-TSS (NM_009055)	-161.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	69.5	164.0	94.0	51.0	151.0	85.0
Merged-chr4-117190109-4	chr4	117189711	117190711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7587.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	39.0	82.5	90.0	43.5	53.0	45.0
Merged-chr17-55952632-4	chr17	55952117	55953117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015766)	promoter-TSS (NM_015766)	-6.0	NM_015766	50498.0	Mm.256798	NM_015766	ENSMUSG00000003206	Ebi3	EBI-3|IL-27	Epstein-Barr virus induced gene 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-5019415-4	chr1	5018910	5019910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290372)	promoter-TSS (NM_001290372)	129.0	NM_021374	58175.0	Mm.103771	NM_021374	ENSMUSG00000002459	Rgs20	2900073E09Rik|Rgsz1	regulator of G-protein signaling 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11466917-2	chr16	11466417	11467417	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 13 of 20)	ORR1E|LTR|ERVL-MaLR	61269.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80398940-4	chr10	80398457	80399457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001306143, intron 1 of 6)	CpG	574.0	NM_013595	17192.0	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34305802-4	chr17	34305292	34306292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010382)	promoter-TSS (NM_010382)	-75.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	212.5	455.0	378.5	219.0	432.0	317.5
Merged-chr6-88466411-2	chr6	88465911	88466911	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019685, intron 1 of 10)	intron (NM_019685, intron 1 of 10)	1002.0	NM_019685	56505.0	Mm.42195	NM_019685	ENSMUSG00000030079	Ruvbl1	2510009G06Rik|Pontin52|Tip49a	RuvB-like protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114908239-4	chr11	114907749	114908749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	18208.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66075244-4	chr5	66074760	66075760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	B3|SINE|B2	22919.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	20.5	52.0	41.0	15.0	33.0	31.5
Merged-chr12-84846813-4	chr12	84846313	84847313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013589, intron 3 of 34)	intron (NM_013589, intron 3 of 34)	-28989.0	NR_028577	100303738.0	Mm.479389	NR_028577	ENSMUSG00000092130	D030025P21Rik	-	RIKEN cDNA D030025P21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78877326-5	chr15	78876838	78877838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145929, exon 1 of 17)	5' UTR (NM_145929, exon 1 of 17)	148.0	NM_145929	106039.0	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	93.5	357.0	186.0	154.0	312.0	197.0
Merged-chr13-6647357-4	chr13	6646848	6647848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019703, intron 1 of 21)	intron (NM_019703, intron 1 of 21)	1423.0	NM_019703	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132514931-4	chr4	132514437	132515437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4481.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	0.5	10.5	6.5	4.5	23.0	1.5
Merged-chr10-93261309-4	chr10	93260816	93261816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282967, intron 2 of 3)	intron (NM_001282967, intron 2 of 3)	49843.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	14.0	50.0	31.5	9.5	42.5	33.5
Merged-chr11-97241459-4	chr11	97240940	97241940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008942, intron 8 of 22)	intron (NM_008942, intron 8 of 22)	39136.0	NM_008942	19155.0	Mm.29824	NM_008942	ENSMUSG00000001441	Npepps	AAP-S|MP100|Psa|R74825|goku	aminopeptidase puromycin sensitive	protein-coding	30.0	62.0	28.5	25.5	64.0	41.5
Merged-chr14-76755759-3	chr14	76755260	76756260	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4371.0	NR_153763	73883.0	Mm.489041	NR_153763		4930431P22Rik	-	RIKEN cDNA 4930431P22 gene	ncRNA	12.0	29.5	9.5	0.0	0.0	1.5
Merged-chr7-127208979-4	chr7	127208486	127209486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144522)	promoter-TSS (NM_144522)	87.0	NM_001347655	17907.0	Mm.14526	NM_016754	ENSMUSG00000030672	Mylpf	2410014J02Rik|MLC-2|Mlc2	myosin light chain, phosphorylatable, fast skeletal muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-88481895-4	chr9	88481367	88482367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284328, intron 1 of 11)	CpG	530.0	NM_001311113	56403.0	Mm.260545	NM_019666	ENSMUSG00000032423	Syncrip	2610109K23Rik|4632417O19Rik|GRY-RBP|Nsap1|Nsap1l|hnRNP Q|pp68	synaptotagmin binding, cytoplasmic RNA interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11767632-4	chr8	11767129	11768129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017402, intron 1 of 19)	RMER15|LTR|ERVL	9299.0	NM_001113518	54126.0	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86441583-4	chr1	86441093	86442093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	15264.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85593200-4	chr12	85592703	85593703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-5902.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64370384-4	chr13	64369911	64370911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009984, exon 1 of 8)	5' UTR (NM_009984, exon 1 of 8)	109.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	182.0	447.5	401.5	83.5	309.5	251.0
Merged-chr4-105204385-4	chr4	105203898	105204898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 2 of 5)	MIRc|SINE|MIR	47051.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	4.0	35.5	24.5	16.5	27.0	21.5
Merged-chr7-25238207-10	chr7	25237700	25238700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001031667)	promoter-TSS (NM_001031667)	-349.0	NM_001031667	606496.0	Mm.491101	NM_001031667	ENSMUSG00000057177	Gsk3a	2700086H06Rik	glycogen synthase kinase 3 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17281202-4	chr6	17280701	17281701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277756)	promoter-TSS (NM_001277756)	16.0	NM_016900	12390.0	Mm.396075	NM_016900	ENSMUSG00000000058	Cav2	AI447843	caveolin 2	protein-coding	0.0	0.0	1.0	3.5	0.0	4.0
Merged-chr7-31037173-4	chr7	31036665	31037665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287217, intron 5 of 8)	MLT1K|LTR|ERVL-MaLR	3152.0	NR_106017	102465635.0		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40142322-4	chr10	40141821	40142821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028247)	promoter-TSS (NM_028247)	-67.0	NM_001114332	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-54950682-4	chr9	54950150	54951150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011966)	promoter-TSS (NM_011966)	-209.0	NM_011966	26441.0	Mm.30270	NM_011966	ENSMUSG00000032301	Psma4	C9	proteasome (prosome, macropain) subunit, alpha type 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130801449-4	chr4	130800951	130801951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	8914.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128655098-3	chr4	128654596	128655596	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	CpG	394.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91717160-4	chr16	91716644	91717644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026994, intron 2 of 11)	MTE2a|LTR|ERVL-MaLR	11658.0	NM_026994	66609.0	Mm.109823	NM_026994	ENSMUSG00000058240	Cryzl1	2210407J23Rik|2410006O11Rik|QOH-1	crystallin, zeta (quinone reductase)-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75748419-4	chr15	75747920	75748920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194350)	promoter-TSS (NM_194350)	-498.0	NM_194350	378435.0	Mm.309589	NM_194350	ENSMUSG00000047591	Mafa	RIPE3b1	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112395157-4	chr13	112394650	112395650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68920.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97205717-4	chr6	97205210	97206210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301857)	promoter-TSS (NM_001301857)	-63.0	NM_001301859	22200.0	Mm.277626	NM_011666	ENSMUSG00000030061	Uba3	A830034N06Rik|AI256736|AI848246|AW546539|Ube1c	ubiquitin-like modifier activating enzyme 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93599948-4	chr2	93599451	93600451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42483.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70851211-4	chr17	70850730	70851730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009372)	promoter-TSS (NM_009372)	-20.0	NM_009372	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-37215770-4	chr8	37215274	37216274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-191536.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	17.0	6.0	16.0	20.0	5.0	7.5
Merged-chr19-40894699-4	chr19	40894183	40895183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028319)	promoter-TSS (NM_028319)	-20.0	NR_106167	102466881.0		NR_106167	ENSMUSG00000099118	Mir8092	Gm27407|mmu-mir-8092	microRNA 8092	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100039953-4	chr5	100039468	100040468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026421)	promoter-TSS (NM_026421)	-26.0	NM_026421	67870.0	Mm.11311	NM_026421	ENSMUSG00000029326	Enoph1	2310057D15Rik|BB183658|C81437	enolase-phosphatase 1	protein-coding	12.0	45.5	28.0	15.0	47.5	29.0
Merged-chr10-78134594-4	chr10	78134090	78135090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35178.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152010457-4	chr4	152009964	152010964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033352, intron 1 of 3)	intron (NM_001033352, intron 1 of 3)	1573.0	NM_001033352	242785.0	Mm.22306	NM_001033352	ENSMUSG00000073700	Klhl21	1810045K06Rik|D330008A20|mKIAA0469	kelch-like 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89123163-4	chr15	89122664	89123664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163319)	promoter-TSS (NM_001163319)	-14.0	NM_001163319	328580.0	Mm.380934	NM_001163319	ENSMUSG00000051786	Tubgcp6	AI843275|D430023H11|GCP-6|mKIAA1669	tubulin, gamma complex associated protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34640498-2	chr17	34639998	34640998	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4385.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	12.5	27.5	21.0	7.0	11.5	8.0
Merged-chr17-88442062-4	chr17	88441552	88442552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355742, intron 1 of 5)	intron (NM_001355742, intron 1 of 5)	1348.0	NM_001355742	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	25.0	55.5	69.5	13.0	64.5	37.0
Merged-chr1-148903315-4	chr1	148902819	148903819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1019120.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58015413-4	chr15	58014923	58015923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18871.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96544252-4	chr9	96543748	96544748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053268, intron 23 of 23)	intron (NM_053268, intron 23 of 23)	-65573.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98912805-4	chr13	98912334	98913334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 1 of 23)	intron (NM_178716, intron 1 of 23)	13550.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79591405-4	chr3	79590941	79591941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026352, exon 1 of 10)	5' UTR (NM_026352, exon 1 of 10)	104.0	NM_026352	67738.0	Mm.295252	NM_026352	ENSMUSG00000027804	Ppid	4930564J03Rik|CYP-40|Ppidl|Ppif	peptidylprolyl isomerase D (cyclophilin D)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32538951-4	chr11	32538459	32539459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	5693.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	16.0	58.5	27.0	21.0	35.0	37.5
Merged-chr2-26021739-4	chr2	26021256	26022256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133835)	promoter-TSS (NM_133835)	4.0	NM_133835	98766.0	Mm.247824	NM_133835	ENSMUSG00000036352	Ubac1	1110033G07Rik|AA407978|GBDR1|Gdbr1|Kpc2|Ubadc1	ubiquitin associated domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98803881-4	chr13	98803360	98804360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172591, intron 2 of 25)	intron (NM_172591, intron 2 of 25)	11589.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51606080-4	chr11	51605573	51606573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001048061, intron 2 of 7)	CpG	808.0	NM_001048061	15384.0	Mm.256875	NM_010448	ENSMUSG00000020358	Hnrnpab	3010025C11Rik|CBF-A|Cgbfa|Hnrpab	heterogeneous nuclear ribonucleoprotein A/B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115707415-4	chr8	115706910	115707910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025577)	promoter-TSS (NM_001025577)	-516.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	7.0	30.0	34.0	7.0	36.5	33.5
Merged-chr14-30627574-4	chr14	30627060	30628060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1352.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	9.0	28.0	30.0	15.0	51.5	30.5
Merged-chr3-95653840-4	chr3	95653367	95654367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4854.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58511629-4	chr16	58511026	58512026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 1 of 10)	B1_Mus2|SINE|Alu	11900.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34945331-4	chr8	34944827	34945827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 1 of 26)	MTD|LTR|ERVL-MaLR	20363.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	11.0	5.5	0.0	2.0	4.0	3.0
Merged-chr18-5334394-4	chr18	5333876	5334876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178722)	promoter-TSS (NM_178722)	63.0	NM_178722	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-160293641-3	chr1	160293140	160294140	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038621, intron 2 of 8)	intron (NM_001038621, intron 2 of 8)	2332.0	NR_035448	100316784.0		NR_035448	ENSMUSG00000089204	Mir1927	mmu-mir-1927	microRNA 1927	ncRNA	0.0	10.0	4.0	2.0	2.5	8.5
Merged-chr17-34119911-2	chr17	34119399	34120399	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037970)	promoter-TSS (NR_037970)	1.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	32.5	114.0	85.5	55.0	117.5	86.0
Merged-chr19-7056740-4	chr19	7056191	7057191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134147)	promoter-TSS (NM_134147)	-77.0	NM_134147	107227.0	Mm.439977	NM_134147	ENSMUSG00000036278	Macrod1	AI604841|AW743046|D930010J01Rik|Lrp16	MACRO domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79089262-4	chr3	79088757	79089757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099624, intron 11 of 23)	intron (NM_001099624, intron 11 of 23)	55630.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	17.0	52.5	20.0	30.0	48.0	45.5
Merged-chr4-32657069-4	chr4	32656596	32657596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081392)	promoter-TSS (NM_001081392)	-23.0	NM_001081392	100019.0	Mm.24627	NM_133874	ENSMUSG00000058006	Mdn1	4833432B22Rik|A130070M06|AA958993|D4Abb1e|Gm135	midasin AAA ATPase 1	protein-coding	23.0	62.5	35.0	17.5	38.0	40.5
Merged-chr11-100619667-4	chr11	100619151	100620151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019795, exon 1 of 14)	5' UTR (NM_019795, exon 1 of 14)	517.0	NM_019795	56354.0	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	90.5	219.0	159.0	81.5	249.5	141.5
Merged-chr5-101922671-2	chr5	101922171	101923171	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 20 of 66)	intron (NM_172882, intron 20 of 66)	147250.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126584771-4	chr7	126584217	126585217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138310)	promoter-TSS (NM_138310)	-291.0	NM_138310	171504.0	Mm.170665	NM_138310	ENSMUSG00000042759	Apobr	Apob-48r|Apob48r	apolipoprotein B receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5816125-4	chr19	5815623	5816623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13451.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20201206-4	chr11	20200680	20201680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008996)	promoter-TSS (NM_008996)	-232.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-70385720-4	chr16	70385225	70386225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 2 of 15)	intron (NM_028803, intron 2 of 15)	71776.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	26.0	44.0	28.0	7.5	20.5	19.5
Merged-chr17-26466921-4	chr17	26466407	26467407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41565.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	3.5	16.0	1.5	5.0	2.0	7.5
Merged-chr13-103920500-4	chr13	103920005	103921005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289474)	promoter-TSS (NM_001289474)	81.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-100487472-4	chr10	100486954	100487954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110013)	promoter-TSS (NM_001110013)	-107.0	NM_001110013	237500.0	Mm.296805	NM_001033332	ENSMUSG00000036676	Tmtc3	9130014E20Rik|B130008E12Rik|mSmile	transmembrane and tetratricopeptide repeat containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123983013-4	chr8	123982509	123983509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019552, exon 1 of 13)	5' UTR (NM_019552, exon 1 of 13)	113.0	NM_019552	56199.0	Mm.274243	NM_019552	ENSMUSG00000031974	Abcb10	Abc-me|Abcb12	ATP-binding cassette, sub-family B (MDR/TAP), member 10	protein-coding	33.5	84.5	97.5	43.5	124.5	74.5
Merged-chr2-145934762-4	chr2	145934268	145935268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025820)	promoter-TSS (NM_025820)	-16.0	NM_175280	78774.0	Mm.136347	NM_175280	ENSMUSG00000037143	Cfap61	4930529M08Rik|BB178539|BC024760	cilia and flagella associated protein 61	protein-coding	33.5	49.5	34.5	29.0	54.5	73.0
Merged-chr18-46477035-4	chr18	46476520	46477520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11204.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-105420359-2	chr11	105419859	105420859	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039242, intron 4 of 5)	Charlie4a|DNA|hAT-Charlie	36376.0	NM_172568	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-115902504-4	chr3	115902005	115903005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027193, intron 4 of 7)	intron (NM_027193, intron 4 of 7)	14322.0	NM_027193	69740.0	Mm.5915	NM_027193	ENSMUSG00000033554	Dph5	2410012M04Rik|AU045680|C80186	diphthamide biosynthesis 5	protein-coding	0.0	0.5	2.0	4.0	0.0	1.5
Merged-chr11-5758006-4	chr11	5757516	5758516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361588, intron 1 of 6)	RMER16_Mm|LTR|ERVK	-4134.0	NR_015577	76508.0	Mm.260203	NR_015577	ENSMUSG00000083844	Ube2d-ps	1600028I17Rik|2210015D19Rik|AI596465	ubiquitin-conjugating enzyme E2D, pseudogene	ncRNA	0.0	18.0	8.5	6.0	15.0	14.5
Merged-chr11-86544870-4	chr11	86544370	86545370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199047)	promoter-TSS (NM_001199047)	-63.0	NM_001114334	72508.0	Mm.394280	NM_028259	ENSMUSG00000020516	Rps6kb1	2610318I15Rik|4732464A07Rik|70kDa|AA959758|AI256796|AI314060|P70S6K1|S6K|S6K1|p70/85s6k|p70s6k	ribosomal protein S6 kinase, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102018266-4	chr7	102017775	102018775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010531)	promoter-TSS (NM_010531)	-120.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	57.5	89.5	62.0	47.5	109.0	88.0
Merged-chr17-44664094-3	chr17	44663591	44664591	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271627, intron 4 of 7)	intron (NM_001271627, intron 4 of 7)	72085.0	NR_073425	12393.0	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125131862-4	chr6	125131365	125132365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138747)	promoter-TSS (NM_138747)	-18.0	NM_138747	110109.0	Mm.29203	NM_138747	ENSMUSG00000038279	Nop2	120kDa|A530002O17|Nol1	NOP2 nucleolar protein	protein-coding	15.5	17.0	26.5	20.0	64.0	39.5
Merged-chr1-80613581-4	chr1	80613075	80614075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 4 of 55)	intron (NM_175291, intron 4 of 55)	51777.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61032299-4	chr9	61031824	61032824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15255.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-27202320-2	chr8	27201820	27202820	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029674, intron 1 of 8)	intron (NM_029674, intron 1 of 8)	227.0	NM_029674	76615.0	Mm.272794	NM_029674	ENSMUSG00000039720	Got1l1	1700083M11Rik	glutamic-oxaloacetic transaminase 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51689092-1	chr11	51688592	51689592	+	1000.0	f0_c57.idr	promoter-TSS (NM_025319)	promoter-TSS (NM_025319)	-458.0	NM_025319	66050.0	Mm.35693	NM_025319	ENSMUSG00000007777	0610009B22Rik	-	RIKEN cDNA 0610009B22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29272563-4	chr6	29272063	29273063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023516)	promoter-TSS (NM_023516)	-63.0	NM_023516	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-23039808-1	chr2	23039308	23040308	+	1000.0	f0_balb.idr	intron (NM_001077190, intron 1 of 10)	CpG	433.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55635760-4	chr14	55635269	55636269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024267)	promoter-TSS (NM_024267)	-85.0	NM_024267	75751.0	Mm.27546	NM_024267	ENSMUSG00000002319	Ipo4	8430408O15Rik|AA409693|Imp4a|RanBP4	importin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67696101-4	chr10	67695614	67696614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124155.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14842409-4	chr8	14841905	14842905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 14 of 15)	intron (NM_172910, intron 14 of 15)	-46131.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.0	0.0	4.0	0.0	0.0	1.5
Merged-chr16-3884580-4	chr16	3884082	3885082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029090)	promoter-TSS (NM_029090)	-37.0	NM_029090	74763.0	Mm.28403	NM_029090	ENSMUSG00000005982	Naa60	1200013P24Rik|AI315146|HAT4|Nat15|NatF	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-53491903-2	chr3	53491403	53492403	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153156, intron 1 of 6)	B3|SINE|B2	3110.0	NM_153156	229277.0	Mm.222810	NM_153156	ENSMUSG00000027744	Stoml3	Epb7.2l|SLP3|sro	stomatin (Epb7.2)-like 3	protein-coding	0.0	1.0	4.0	0.0	0.0	2.5
Merged-chr7-30280469-4	chr7	30279986	30280986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146186)	promoter-TSS (NM_146186)	-65.0	NM_146186	233064.0	Mm.271677	NM_146186	ENSMUSG00000037020	Wdr62	2310038K02Rik|b2b1508Clo	WD repeat domain 62	protein-coding	207.0	555.5	446.5	168.5	442.0	364.5
Merged-chr2-5951048-4	chr2	5950547	5951547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081132)	promoter-TSS (NM_001081132)	-422.0	NM_001081132	326622.0	Mm.31102	NM_001081132	ENSMUSG00000043241	Upf2	-	UPF2 regulator of nonsense transcripts homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147063944-1	chr5	147063444	147064444	+	1000.0	f1_c57bl6.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	12628.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	45.5	51.5	36.5	151.0	434.5	291.5
Merged-chr7-43608192-4	chr7	43607700	43608700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355131, intron 1 of 3)	intron (NM_001355131, intron 1 of 3)	1031.0	NM_028913	74400.0	Mm.159188	NM_028913	ENSMUSG00000055102	Zfp819	4930427I11Rik|4933405K07Rik	zinc finger protein 819	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137786304-4	chr5	137785787	137786787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_144913, exon 1 of 4)	5' UTR (NM_144913, exon 1 of 4)	414.0	NM_144913	231803.0	Mm.61193	NM_144913	ENSMUSG00000029726	Mepce	Bcdin3|D5Wsu46e	methylphosphate capping enzyme	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-53571939-4	chr6	53571444	53572444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 5 of 10)	intron (NM_001327821, intron 5 of 10)	-1430.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	37.5	139.5	73.0	32.5	111.0	66.0
Merged-chr18-77767814-4	chr18	77767292	77768292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146089)	promoter-TSS (NM_146089)	7.0	NM_146089	225745.0	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83104218-4	chr8	83103758	83104758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-61094.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	100.5	273.0	147.5	141.0	273.0	163.5
Merged-chr6-114089833-2	chr6	114089333	114090333	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41408.0	NM_172890	243616.0	Mm.44683	NM_172890	ENSMUSG00000030307	Slc6a11	D930045G19Rik|E130202I16Rik|GAT4|Gabt4|Gat3	solute carrier family 6 (neurotransmitter transporter, GABA), member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-72244447-1	chr1	72243947	72244947	+	1000.0	f0_balb.idr	intron (NR_155355, intron 1 of 3)	intron (NR_155355, intron 1 of 3)	454.0	NR_155355	320933.0	Mm.440953	NR_155355		D230017M19Rik	B930094L07Rik	RIKEN cDNA D230017M19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-76018225-2	chr13	76017725	76018725	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178916, exon 1 of 4)	5' UTR (NM_178916, exon 1 of 4)	337.0	NM_178916	218341.0	Mm.266515	NM_178916	ENSMUSG00000043190	Rfesd	AI256775|D030068K09	Rieske (Fe-S) domain containing	protein-coding	181.0	257.0	244.5	87.5	163.5	120.5
Merged-chr13-64248596-4	chr13	64248093	64249093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045798)	promoter-TSS (NR_045798)	-55.0	NM_001122989	218294.0	Mm.25335	NM_172587	ENSMUSG00000033102	Cdc14b	2810432N10Rik|A530086E13Rik|AA472821|CDC14B3|Cdc14B1	CDC14 cell division cycle 14B	protein-coding	26.5	65.0	57.0	23.0	58.0	32.0
Merged-chr12-36157918-4	chr12	36157427	36158427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146033, intron 1 of 9)	intron (NM_146033, intron 1 of 9)	803.0	NM_146033	217473.0	Mm.130422	NM_146033	ENSMUSG00000036188	Ankmy2	AI035571|ZMYND20	ankyrin repeat and MYND domain containing 2	protein-coding	22.0	17.5	36.0	29.5	47.5	32.0
Merged-chr2-126933178-4	chr2	126932674	126933674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023220)	promoter-TSS (NM_023220)	61.0	NM_023220	66552.0	Mm.269928	NM_023220	ENSMUSG00000027366	Sppl2a	2010106G01Rik|C130089K23Rik	signal peptide peptidase like 2A	protein-coding	217.5	465.0	313.0	198.5	388.5	405.0
Merged-chr2-14244839-4	chr2	14244332	14245332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 3 of 29)	intron (NM_008625, intron 3 of 29)	15418.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31871000-4	chr5	31870516	31871516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 6 of 11)	MTEa|LTR|ERVL-MaLR	172966.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-80080621-4	chr2	80080134	80081134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	-41732.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99536260-5	chr7	99535746	99536746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178220, intron 1 of 14)	intron (NM_178220, intron 1 of 14)	760.0	NM_177231	109689.0	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	10.5	9.5	12.5	8.5	16.0	14.5
Merged-chr13-67772495-3	chr13	67771993	67772993	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7200.0	NM_028402	72958.0	Mm.53849	NM_028402	ENSMUSG00000090659	Zfp493	2900054J07Rik|Rslcan12	zinc finger protein 493	protein-coding	5.5	24.0	11.5	0.0	0.5	0.0
Merged-chr3-36449482-4	chr3	36448997	36449997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009673, intron 12 of 12)	intron (NM_009673, intron 12 of 12)	26027.0	NR_105976	102466786.0		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71263323-4	chr17	71262862	71263862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357338, intron 4 of 7)	intron (NM_001357338, intron 4 of 7)	47649.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	37.0	32.0	49.0	58.0	173.5	76.5
Merged-chr5-123749563-4	chr5	123749064	123750064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042421)	promoter-TSS (NM_001042421)	-150.0	NM_001359865	208606.0	Mm.276341	NM_025438	ENSMUSG00000029422	Rsrc2	1500011J06Rik	arginine/serine-rich coiled-coil 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-23156014-4	chr2	23155508	23156508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025979)	promoter-TSS (NM_025979)	16.0	NM_025979	67121.0	Mm.253721	NM_025979	ENSMUSG00000026779	Mastl	2700091H24Rik|C88295|GW|GWL|MAST-L|THC2	microtubule associated serine/threonine kinase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-94834955-4	chr17	94834432	94835432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045963)	promoter-TSS (NR_045963)	-133.0	NR_045963	100038746.0	Mm.456686	NR_045963	ENSMUSG00000066057	Gm1976	100038868	predicted gene 1976	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-20305670-2	chr3	20305170	20306170	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-29937.0	NM_029706	76703.0	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103017592-4	chr3	103017143	103018143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2903.0	NM_001310693	229663.0	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	1.5	11.5	8.0	2.0	10.5	7.5
Merged-chr5-137828890-4	chr5	137828395	137829395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153510, intron 3 of 6)	intron (NM_153510, intron 3 of 6)	7383.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139555944-4	chr5	139555403	139556403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12005.0	NM_013702	22255.0	Mm.42190	NM_013702	ENSMUSG00000029546	Uncx	Chx4|Uncx4.1	UNC homeobox	protein-coding	5.0	0.0	2.5	0.0	16.0	9.5
Merged-chr17-88551178-4	chr17	88550689	88551689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028658, intron 7 of 21)	intron (NM_028658, intron 7 of 21)	21065.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	22.5	95.5	105.0	50.0	136.5	79.0
Merged-chr2-120850570-4	chr2	120850058	120851058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038349)	promoter-TSS (NR_038349)	26.0	NM_080788	140810.0	Mm.275698	NM_080788	ENSMUSG00000090100	Ttbk2	2610507N02Rik|AI326283|B930008N24Rik|TTK|Ttbk|Ttbk1|mKIAA0847	tau tubulin kinase 2	protein-coding	12.5	4.0	12.5	29.5	22.0	9.5
Merged-chr2-167102920-2	chr2	167102420	167103420	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008420, exon 2 of 2)	3' UTR (NM_008420, exon 2 of 2)	37627.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73732915-8	chr15	73732453	73733453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166388, intron 1 of 5)	UCON5|Unknown|Unknown	8023.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45136467-4	chr7	45135965	45136965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013520)	promoter-TSS (NM_013520)	-33.0	NR_102725	14256.0	Mm.1658	NM_013520	ENSMUSG00000110206	Flt3l	Flt3lg|Ly72L	FMS-like tyrosine kinase 3 ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67836435-4	chr5	67835923	67836923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	11008.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-40745996-1	chr3	40745496	40746496	+	1000.0	f0_c57.idr	intron (NM_011020, intron 1 of 18)	intron (NM_011020, intron 1 of 18)	383.0	NM_011020	18415.0	Mm.39330	NM_011020	ENSMUSG00000025757	Hspa4l	94kDa|AI461691|APG-1|Osp94	heat shock protein 4 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123009075-4	chr8	123008590	123009590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	33194.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	7.0	32.0	27.0	30.0	43.5	41.5
Merged-chr2-151039402-4	chr2	151038891	151039891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026086)	promoter-TSS (NM_026086)	-12.0	NM_026086	67311.0	Mm.480682	NM_026086	ENSMUSG00000053916	Nanp	1600031M04Rik|Hdhd4	N-acetylneuraminic acid phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127266292-4	chr10	127265791	127266791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190454)	promoter-TSS (NM_001190454)	29.0	NM_001190453	69654.0	Mm.167537	NM_027151	ENSMUSG00000025410	Dctn2	2310042E05Rik|C130077D06Rik|C87049|DCTN-50|GMP23-48K|RBP50|p50	dynactin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134049116-4	chr6	134048612	134049612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007961, intron 1 of 7)	MTD|LTR|ERVL-MaLR	13412.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	6.0	7.0	2.5	0.0	10.0	5.5
Merged-chr10-117905890-4	chr10	117905384	117906384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19575.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	111.0	245.0	201.0	70.5	208.5	159.5
Merged-chr11-11763528-4	chr11	11763040	11764040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025597, intron 7 of 7)	intron (NM_001025597, intron 7 of 7)	45422.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	10.0	25.5	37.0	36.5	44.0	18.0
Merged-chr7-59194451-2	chr7	59193951	59194951	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-34299.0	NM_001033962	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	0.0	0.5	0.5	0.0	0.0	0.0
Merged-chr13-9159506-4	chr13	9158982	9159982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 13 of 17)	intron (NM_172585, intron 13 of 17)	65601.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62629680-4	chr4	62629163	62630163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019492, intron 14 of 19)	intron (NM_019492, intron 14 of 19)	9991.0	NM_134257	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.0	0.5	0.5	0.0	0.0	1.0
Merged-chr5-102053058-4	chr5	102052565	102053565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	16856.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86993829-4	chr11	86993333	86994333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005341)	promoter-TSS (NM_001005341)	-71.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55823969-2	chr16	55823469	55824469	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030612, intron 2 of 13)	intron (NM_030612, intron 2 of 13)	-1831.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127584668-4	chr2	127584117	127585117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028141)	promoter-TSS (NM_028141)	60.0	NM_001111029	72180.0	Mm.46715	NM_028141	ENSMUSG00000034800	Zfp661	2810405K07Rik|A1-5|Znf2	zinc finger protein 661	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75679191-4	chr11	75678696	75679696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277221)	promoter-TSS (NM_001277221)	-63.0	NM_001277219	12928.0	Mm.280125	NM_133656	ENSMUSG00000017776	Crk	Crk-I|Crk-II|Crk-III|Crk3|CrkIII|Crko|c-Crk|p38	v-crk avian sarcoma virus CT10 oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-101556494-4	chr6	101555997	101556997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-178600.0	NM_018884	55983.0	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105171113-2	chr8	105170613	105171613	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161458, intron 1 of 5)	CpG	439.0	NM_001161458	12400.0	Mm.2018	NM_022309	ENSMUSG00000031885	Cbfb	AI893578|PEA2|PEBP2b|Pebp2|Pebpb2	core binding factor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140392854-4	chr5	140392304	140393304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3496.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8829850-4	chr19	8829327	8830327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081196, exon 11 of 14)	exon (NM_001081196, exon 11 of 14)	-7640.0	NM_001136064	14705.0	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	10.0	13.5	12.0	1.0	18.0	22.0
Merged-chr14-122107575-3	chr14	122107088	122108088	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015586)	promoter-TSS (NR_015586)	506.0	NM_080556	68059.0	Mm.275191	NM_080556	ENSMUSG00000025544	Tm9sf2	1500001N15Rik|AA536814|D14Ertd64e|P76	transmembrane 9 superfamily member 2	protein-coding	3.5	24.0	14.5	13.0	29.0	24.5
Merged-chr8-111939990-4	chr8	111939490	111940490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026693)	promoter-TSS (NM_026693)	-713.0	NM_026693	93739.0	Mm.371666	NM_026693	ENSMUSG00000031950	Gabarapl2	0610012F20Rik|2900019O08Rik|AI173605|GATE-16|Gef2	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2	protein-coding	35.5	39.5	43.0	44.0	38.5	48.0
Merged-chr4-134767991-4	chr4	134767470	134768470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145554)	promoter-TSS (NM_145554)	34.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111197083-2	chr10	111196583	111197583	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003717, intron 1 of 22)	RMER1B|Other|Other	32281.0	NM_175489	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-23151764-4	chr19	23151261	23152261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010638, intron 1 of 1)	intron (NM_010638, intron 1 of 1)	2330.0	NR_035423	100316672.0		NR_035423	ENSMUSG00000080626	Mir1192	Mirn1192|mmu-mir-1192	microRNA 1192	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-129886102-2	chr10	129885602	129886602	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F|LINE|L1	-11347.0	NM_207159	259165.0	Mm.377868	NM_207159	ENSMUSG00000059134	Olfr814	MOR113-5|MOR113-8	olfactory receptor 814	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-23028324-4	chr8	23027779	23028779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110783, intron 1 of 43)	intron (NM_001110783, intron 1 of 43)	-6820.0	NM_001277281	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	11.0	8.0	7.0	10.5	4.5	13.5
Merged-chr3-95740713-4	chr3	95740213	95741213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356965, intron 17 of 17)	intron (NM_001356965, intron 17 of 17)	-1144.0	NM_001252653	13601.0	Mm.3433	NM_007899	ENSMUSG00000028108	Ecm1	AI663821|p85	extracellular matrix protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46556335-4	chr17	46555824	46556824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020493)	promoter-TSS (NM_020493)	-162.0	NM_020493	20807.0	Mm.45044	NM_020493	ENSMUSG00000015605	Srf	AW049942|AW240594	serum response factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172082746-4	chr1	172082264	172083264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021607)	promoter-TSS (NM_021607)	-15.0	NM_021607	59287.0	Mm.218203	NM_021607	ENSMUSG00000003458	Ncstn	9430068N19Rik|AA727311|Aph2|D1Dau13e|Kiaa0253|Nct|mKIAA0253	nicastrin	protein-coding	123.0	354.5	237.5	154.5	262.5	267.0
Merged-chr6-28424013-3	chr6	28423504	28424504	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007480, intron 1 of 5)	intron (NM_007480, intron 1 of 5)	400.0	NM_007480	11844.0	Mm.389075	NM_007480	ENSMUSG00000020440	Arf5	-	ADP-ribosylation factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-92853745-4	chr8	92853255	92854255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008610)	TTS (NM_008610)	-1578.0	NM_173014	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	171.5	500.0	409.5	201.0	487.5	425.0
Merged-chr2-181193208-4	chr2	181192700	181193700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5953.0	NM_001356427	66496.0	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5867620-2	chr17	5867120	5868120	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025664, intron 1 of 17)	intron (NM_025664, intron 1 of 17)	26240.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-26799821-4	chr10	26799316	26800316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	27304.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94183364-4	chr8	94182851	94183851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4262.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77965620-2	chr10	77965120	77966120	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 4 of 33)	L3|LINE|CR1	4252.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-45945016-4	chr11	45944519	45945519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028185)	promoter-TSS (NM_028185)	-84.0	NM_028185	72290.0	Mm.249827	NM_028185	ENSMUSG00000044847	Lsm11	2210404M20Rik|AV079530	U7 snRNP-specific Sm-like protein LSM11	protein-coding	0.0	5.0	5.0	0.0	5.0	5.0
Merged-chr9-116099143-4	chr9	116098647	116099647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 5 of 6)	intron (NM_029575, intron 5 of 6)	76216.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	22.0	56.0	77.5	37.5	81.5	103.5
Merged-chr10-62920657-4	chr10	62920163	62921163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175194)	promoter-TSS (NM_175194)	30.0	NM_175194	73132.0	Mm.37457	NM_175194	ENSMUSG00000071253	Slc25a16	3110021G18Rik|GDA|GDC|HGT.1|ML7	solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80323960-4	chr17	80323421	80324421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145452, intron 1 of 17)	intron (NM_001145452, intron 1 of 17)	16514.0	NM_001145452	381112.0	Mm.360004	NM_001145452	ENSMUSG00000054901	Arhgef33	Gm941	Rho guanine nucleotide exchange factor (GEF) 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39007337-4	chr6	39006807	39007807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 5 of 12)	L2c|LINE|L2	60279.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94471654-4	chr10	94471147	94472147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-43210.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38519438-4	chr15	38518930	38519930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102458)	promoter-TSS (NM_001102458)	-164.0	NM_018745	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38518334-4	chr15	38517829	38518829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301688, intron 1 of 11)	CpG	937.0	NM_001301688	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60723556-2	chr10	60723056	60724056	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 4 of 5)	intron (NM_023596, intron 4 of 5)	-27066.0	NM_023370	22295.0	Mm.440327	NM_023370	ENSMUSG00000012819	Cdh23	4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v	cadherin 23 (otocadherin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29134910-4	chr7	29134404	29135404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145149)	promoter-TSS (NM_145149)	-29.0	NM_001174155	233046.0	Mm.465324	NM_145149	ENSMUSG00000030589	Rasgrp4	-	RAS guanyl releasing protein 4	protein-coding	1.0	4.0	3.5	2.0	4.0	3.0
Merged-chr15-98867512-4	chr15	98867016	98868016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033276, intron 1 of 54)	intron (NM_001033276, intron 1 of 54)	3689.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-66920371-4	chr10	66919898	66920898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_138560)	promoter-TSS (NR_138560)	-14.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-33908027-4	chr1	33907532	33908532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276764)	promoter-TSS (NM_001276764)	-193.0	NM_001276764	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123952236-4	chr4	123951713	123952713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34780.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	19.5	6.5	28.5	22.5	48.5	35.0
Merged-chr11-106669911-4	chr11	106669406	106670406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 13 of 14)	intron (NM_001305158, intron 13 of 14)	45375.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0.0	8.5	3.5	0.5	11.5	14.0
Merged-chr1-55506596-4	chr1	55506106	55507106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	MIR|SINE|MIR	100660.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	182.5	358.0	268.0	176.5	371.0	239.5
Merged-chr7-25712025-4	chr7	25711567	25712567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028771, exon 5 of 5)	3' UTR (NM_028771, exon 5 of 5)	6986.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151041180-4	chr1	151040675	151041675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47740.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101372169-4	chr15	101371660	101372660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2035.0	NM_028770	74127.0	Mm.440055	NM_028770	ENSMUSG00000037185	Krt80	1200016G03Rik|2310041I20Rik|Kb20	keratin 80	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24374096-4	chr7	24373585	24374585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163510, intron 1 of 8)	intron (NM_001163510, intron 1 of 8)	3822.0	NM_008433	16534.0	Mm.9911	NM_008433	ENSMUSG00000054342	Kcnn4	IK1|IKCA1|KCA4|KCa3.1|SK4|SKCas|mIKCa1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	protein-coding	10.0	33.0	10.0	2.5	8.0	5.5
Merged-chr11-95259279-4	chr11	95258791	95259791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2238.0	NM_053093	93670.0	Mm.40085	NM_053093	ENSMUSG00000020872	Tac4	AW489379|PPT-C	tachykinin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117305583-4	chr8	117305091	117306091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-43579.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46934388-4	chr8	46933884	46934884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52503.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27028789-4	chr2	27028284	27029284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172659)	promoter-TSS (NM_172659)	-786.0	NM_001177627	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118236724-4	chr11	118236212	118237212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	11880.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25797155-4	chr17	25796653	25797653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133719)	promoter-TSS (NM_133719)	-108.0	NM_133719	70083.0	Mm.41925	NM_133719	ENSMUSG00000002274	Metrn	1810034B16Rik|EyeLinc16|Hyrac	meteorin, glial cell differentiation regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154613941-1	chr2	154613441	154614441	+	1000.0	f1_balb.idr	intron (NM_199304, intron 1 of 14)	CpG	573.0	NM_199304	228807.0	Mm.103555	NM_199304	ENSMUSG00000059842	Zfp341	Znf341	zinc finger protein 341	protein-coding	12.5	77.0	86.5	19.5	18.0	30.0
Merged-chr15-58325596-4	chr15	58325117	58326117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1448.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	6.5	14.5	7.5	6.5	29.5	12.5
Merged-chr17-79485449-3	chr17	79484958	79485958	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7573.0	NR_033463	74622.0	Mm.311921	NR_033463		4930429F11Rik	-	RIKEN cDNA 4930429F11 gene	ncRNA	2.0	14.5	21.0	0.0	2.0	0.0
Merged-chr7-101050944-4	chr7	101050450	101051450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38897.0	NM_001302346	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45391721-4	chr13	45391244	45392244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153789, intron 2 of 6)	intron (NM_153789, intron 2 of 6)	2002.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	18.5	85.5	55.5	29.5	113.0	51.5
Merged-chr3-88513726-8	chr3	88513203	88514203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10351.0	NM_001002011	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103163392-4	chr15	103162878	103163878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027885)	promoter-TSS (NM_027885)	-94.0	NM_027885	71726.0	Mm.254820	NM_027885	ENSMUSG00000036061	Smug1	1200013B09Rik|A930006H09Rik|C85220	single-strand selective monofunctional uracil DNA glycosylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135149501-4	chr5	135149006	135150006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013763)	promoter-TSS (NM_013763)	-205.0	NM_013763	27368.0	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75732814-4	chr11	75732326	75733326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009536)	promoter-TSS (NM_009536)	-61.0	NM_009536	22627.0	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10291319-2	chr19	10290819	10291819	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	13558.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32570157-4	chr4	32569645	32570645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_026843, intron 1 of 4)	intron (NR_026843, intron 1 of 4)	1517.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	268.0	503.5	409.0	263.5	641.5	420.5
Merged-chr3-96569392-2	chr3	96568892	96569892	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2591.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	10.0	2.5	6.0	0.5	12.0	8.5
Merged-chr5-140511651-2	chr5	140511151	140512151	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021528, intron 1 of 1)	intron (NM_021528, intron 1 of 1)	6042.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-67268728-3	chr13	67268220	67269220	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_155551, exon 1 of 6)	non-coding (NR_155551, exon 1 of 6)	274.0	NR_155551	238690.0	Mm.306358	NM_001001152	ENSMUSG00000055480	Zfp458	BC062958|Gm33446|Rslcan-7|Znf728|mszf59-2	zinc finger protein 458	protein-coding	73.0	172.0	140.0	136.0	238.0	194.0
Merged-chr2-124704392-4	chr2	124703910	124704910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	50829.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120113025-4	chr10	120112515	120113515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080446)	promoter-TSS (NM_080446)	-50.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-32935119-4	chr13	32934610	32935610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30403.0	NM_011454	20708.0	Mm.36526	NM_011454	ENSMUSG00000042842	Serpinb6b	NK13|Spi12|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135148293-2	chr1	135147793	135148793	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026823, intron 1 of 6)	intron (NM_026823, intron 1 of 6)	1459.0	NM_026823	68724.0	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-76648940-2	chr2	76648440	76649440	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011871)	promoter-TSS (NM_011871)	-946.0	NM_011871	23992.0	Mm.277250	NM_011871	ENSMUSG00000002731	Prkra	AV120107|PRK|Pact|RAX|lear	protein kinase, interferon inducible double stranded RNA dependent activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122946020-4	chr8	122945512	122946512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	96272.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	20.0	34.5	22.0	18.0	38.0	36.5
Merged-chr15-78900697-4	chr15	78900184	78901184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316685, intron 1 of 17)	intron (NM_001316685, intron 1 of 17)	916.0	NM_009164	20401.0	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	24.0	92.0	55.0	17.0	116.0	57.0
Merged-chr1-191253820-4	chr1	191253328	191254328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29374.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	0.0	5.0	11.0	0.0	1.0	7.5
Merged-chr7-44496463-4	chr7	44495916	44496916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028169)	promoter-TSS (NM_028169)	97.0	NM_197991	69683.0	Mm.294759	NM_197991	ENSMUSG00000008140	Emc10	2310044H10Rik|5430410O10Rik|Inm02|Mirta22	ER membrane protein complex subunit 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103997706-2	chr11	103997206	103998206	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30835.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153051865-2	chr2	153051365	153052365	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001011732, intron 1 of 2)	intron (NM_001011732, intron 1 of 2)	-14090.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-28805381-4	chr3	28804831	28805831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026517)	promoter-TSS (NM_026517)	-177.0	NR_154889	68028.0	Mm.21724	NM_026517	ENSMUSG00000039221	Rpl22l1	3110001N18Rik|AU041196	ribosomal protein L22 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53268371-4	chr18	53267853	53268853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	22691.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59554359-4	chr11	59553847	59554847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 5 of 9)	RSINE1|SINE|B4	11661.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41600162-4	chr13	41599651	41600651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6065.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88579644-4	chr3	88579143	88580143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356316)	promoter-TSS (NM_001356316)	35.0	NM_025448	66256.0	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|SSR-beta|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	31.5	50.5	67.0	32.0	45.0	70.5
Merged-chr11-115476125-2	chr11	115475625	115476625	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001361594, exon 2 of 3)	exon (NM_001361594, exon 2 of 3)	458.0	NM_001361594	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115612356-2	chr11	115611856	115612856	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001243586, exon 1 of 5)	5' UTR (NM_001243586, exon 1 of 5)	147.0	NM_027162	69674.0	Mm.390387	NM_027162	ENSMUSG00000020743	Mif4gd	1110014L05Rik|2310075G12Rik	MIF4G domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55722198-4	chr14	55721662	55722662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019519)	promoter-TSS (NM_019519)	40.0	NR_153435	56187.0	Mm.87216	NM_019519	ENSMUSG00000040472	Rabggta	gm	Rab geranylgeranyl transferase, a subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87722892-2	chr6	87722392	87723392	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7977.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	1.0	7.5	4.5	3.5	3.0	9.5
Merged-chr7-38085048-4	chr7	38084538	38085538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	22452.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	6.0	10.0	5.0	2.5	12.0	18.0
Merged-chr14-25589367-2	chr14	25588867	25589867	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033492, exon 1 of 1)	non-coding (NR_033492, exon 1 of 1)	2563.0	NR_033492	77592.0	Mm.444871	NM_175264		4931406H21Rik	-	RIKEN cDNA 4931406H21 gene	ncRNA	0.0	0.0	0.0	3.0	0.0	0.0
Merged-chr5-90500960-2	chr5	90500460	90501460	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007423, intron 7 of 14)	intron (NM_007423, intron 7 of 14)	10246.0	NM_007423	11576.0	Mm.358570	NM_007423	ENSMUSG00000054932	Afp	-	alpha fetoprotein	protein-coding	0.0	4.0	0.0	1.0	2.5	8.5
Merged-chr12-85596394-2	chr12	85595891	85596891	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-2714.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-3032279-5	chr9	3031729	3032729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	6514.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134268216-3	chr6	134267722	134268722	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007961, exon 8 of 8)	3' UTR (NM_007961, exon 8 of 8)	-128107.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	20.5	37.0	12.0	83.5	128.0	140.0
Merged-chr9-58806118-4	chr9	58805609	58806609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17403.0	NM_001081192	330953.0	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-23040355-4	chr2	23039841	23040841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331044)	promoter-TSS (NM_001331044)	-100.0	NM_145994	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30809480-2	chr2	30808988	30809988	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356433, intron 1 of 3)	B2_Mm2|SINE|B2	1305.0	NM_001356437	66617.0	Mm.33167	NM_170592	ENSMUSG00000026857	Ntmt1	2610205E22Rik|AL033331|AL033332|Mettl11a|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-32281777-4	chr14	32281267	32282267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011960, intron 15 of 17)	intron (NM_011960, intron 15 of 17)	-40252.0	NM_001081130	239017.0	Mm.318302	NM_001081130	ENSMUSG00000021913	Ogdhl	-	oxoglutarate dehydrogenase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100576106-4	chr13	100575607	100576607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23389.0	NM_001360539	18260.0	Mm.4807	NM_008756	ENSMUSG00000021638	Ocln	AI503564|Ocl	occludin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146795056-4	chr5	146794571	146795571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011669)	promoter-TSS (NM_011669)	-115.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	4.5	15.5	11.0	5.5	15.5	11.0
Merged-chr7-88054418-4	chr7	88053907	88054907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081414, intron 8 of 9)	intron (NM_001081414, intron 8 of 9)	-223678.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7226727-4	chr19	7226211	7227211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027643, exon 8 of 8)	3' UTR (NM_027643, exon 8 of 8)	-9095.0	NM_007750	12868.0	Mm.14022	NM_007750	ENSMUSG00000035885	Cox8a	COX8L	cytochrome c oxidase subunit VIIIa	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59735865-4	chr9	59735343	59736343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001172071, exon 3 of 3)	3' UTR (NM_001172071, exon 3 of 3)	14806.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17348344-4	chr12	17347848	17348848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008421)	promoter-TSS (NM_001008421)	-145.0	NM_001008421	217431.0	Mm.27536	NM_001008421	ENSMUSG00000061458	Nol10	Gm67	nucleolar protein 10	protein-coding	139.5	221.0	242.5	83.0	227.0	170.0
Merged-chr7-89403262-2	chr7	89402766	89403766	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 1 of 14)	intron (NM_001360746, intron 1 of 14)	956.0	NM_001360746	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	8.5	15.5	12.0	1.5	4.0	8.0
Merged-chr1-86533493-2	chr1	86532993	86533993	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6936.0	NM_001360830	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142273428-4	chr3	142272953	142273953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190854, intron 8 of 12)	intron (NM_001190854, intron 8 of 12)	-104028.0	NM_001277216	12167.0	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86492919-4	chr1	86492417	86493417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33640.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116845027-4	chr3	116844521	116845521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14546.0	NM_001113478	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	0.5	2.0	5.0	1.5	0.0	2.0
Merged-chr14-27096951-4	chr14	27096462	27097462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134437, intron 11 of 12)	intron (NM_134437, intron 11 of 12)	-47031.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.0	7.0	2.5	0.0	4.5	1.5
Merged-chr10-80147987-4	chr10	80147491	80148491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021565)	promoter-TSS (NM_021565)	-281.0	NM_001305798	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-82814261-4	chr10	82813764	82814764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038042, intron 1 of 2)	intron (NR_038042, intron 1 of 2)	2141.0	NR_038042	70003.0	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	13.5	58.5	61.5	23.5	23.5	41.5
Merged-chr5-90694656-4	chr5	90694164	90695164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54137.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86394482-4	chr1	86393988	86394988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5127.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20750073-4	chr18	20749579	20750579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3675.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105858702-4	chr8	105858199	105859199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1834.0	NM_026532	68051.0	Mm.455474	NM_026532	ENSMUSG00000008450	Nutf2	2700067I02Rik|AI115459|AI413596|AW546000|Ntf2|Ntf3|PP15	nuclear transport factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107940090-2	chr3	107939590	107940590	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008184, intron 7 of 7)	intron (NM_008184, intron 7 of 7)	3659.0	NM_008184	14867.0	Mm.458154	NM_008184	ENSMUSG00000068762	Gstm6	-	glutathione S-transferase, mu 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34826213-4	chr2	34825720	34826720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013890)	promoter-TSS (NM_013890)	15.0	NM_001164770	30050.0	Mm.4465	NM_013890	ENSMUSG00000035949	Fbxw2	2700071L08Rik|FBW2|Fwd2|MD6	F-box and WD-40 domain protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-92637506-2	chr7	92637009	92638009	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028665)	promoter-TSS (NM_028665)	-367.0	NM_028665	73845.0	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	59.0	133.0	109.5	53.0	104.0	102.5
Merged-chr1-125386471-2	chr1	125385971	125386971	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49256.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-82997913-4	chr6	82997411	82998411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 4 of 9)	intron (NM_033079, intron 4 of 9)	35560.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-33280749-2	chr4	33280249	33281249	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29562.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	1.0	1.5	0.0	2.0	0.0	1.5
Merged-chr19-34640797-4	chr19	34640316	34641316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008331)	promoter-TSS (NM_008331)	-73.0	NM_053217	112419.0	Mm.440727	NM_053217	ENSMUSG00000067297	Ifit1bl2	2010002M12Rik|AW412491|Ifit1b	interferon induced protein with tetratricopeptide repeats 1B like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-26140205-4	chr11	26139687	26140687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027973, intron 1 of 5)	L1MA6|LINE|L1	-62053.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	8.5	11.5	13.0	9.5	29.5	6.5
Merged-chr9-40802254-3	chr9	40801753	40802753	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031165, intron 2 of 8)	intron (NM_031165, intron 2 of 8)	980.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	48.0	84.0	63.5	41.5	85.0	73.0
Merged-chr7-80754230-4	chr7	80753715	80754715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 11 of 37)	intron (NM_016721, intron 11 of 37)	49116.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	31.0	76.0	49.5	13.5	92.5	52.5
Merged-chr16-73647620-4	chr16	73647122	73648122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	694445.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	1.0	4.0	9.0	7.5	6.5	8.0
Merged-chr8-75155071-4	chr8	75154574	75155574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45565.0	NM_008566	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	20.5	13.5	15.0	13.5	11.5	27.0
Merged-chr14-77836925-4	chr14	77836393	77837393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025384, intron 5 of 5)	intron (NM_025384, intron 5 of 5)	-37925.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	67.0	128.5	68.0	29.0	95.0	41.0
Merged-chr1-181138889-3	chr1	181138378	181139378	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026171, intron 4 of 22)	intron (NM_026171, intron 4 of 22)	5326.0	NM_026171	67459.0	Mm.263464	NM_026171	ENSMUSG00000026516	Nvl	1200009I24Rik	nuclear VCP-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-46450532-4	chr6	46450020	46451020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004357, intron 12 of 23)	intron (NM_001004357, intron 12 of 23)	-793876.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	1.0	7.5	14.0	17.0	11.5	12.0
Merged-chr14-73143336-6	chr14	73142823	73143823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033185, intron 1 of 15)	CpG	538.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44604933-4	chr10	44604371	44605371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-146123.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101082474-7	chr11	101081951	101082951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305982)	promoter-TSS (NM_001305982)	-114.0	NM_001305982	71743.0	Mm.182271	NM_027896	ENSMUSG00000001755	Coasy	1300003G02Rik|Dpck|Ppat|Ukr1	Coenzyme A synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-118775350-4	chr13	118774852	118775852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008002, intron 1 of 2)	intron (NM_008002, intron 1 of 2)	60653.0	NM_008002	14165.0	Mm.317323	NM_008002	ENSMUSG00000021732	Fgf10	AEY17|BB213776|Fgf-10|Gsfaey17	fibroblast growth factor 10	protein-coding	3.0	20.0	18.0	27.5	32.5	34.0
Merged-chr12-69683770-4	chr12	69683270	69684270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER102b|DNA|hAT-Charlie	-1918.0	NM_001135559	20663.0	Mm.3770	NM_001135559	ENSMUSG00000034801	Sos2	SOS-2|mSOS-2	SOS Ras/Rho guanine nucleotide exchange factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-97775305-2	chr4	97774805	97775805	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-2321.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58477776-4	chr16	58477288	58478288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 6 of 10)	RMER6C|LTR|ERVK	45638.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19691992-4	chr10	19691484	19692484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20603.0	NM_172786	237313.0	Mm.234667	NM_172786	ENSMUSG00000020007	Il20ra	E230031K19	interleukin 20 receptor, alpha	protein-coding	13.5	18.5	25.5	8.0	73.5	34.5
Merged-chr9-104629406-4	chr9	104628868	104629868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	59885.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	89.0	160.5	123.5	91.0	160.5	130.0
Merged-chr15-54920190-4	chr15	54919677	54920677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136077)	promoter-TSS (NM_001136077)	-31.0	NM_001285994	18606.0	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134102574-4	chr4	134102082	134103082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045571)	promoter-TSS (NR_045571)	-1.0	NR_045571	67586.0	Mm.282029	NM_026257	ENSMUSG00000012126	Ubxn11	4930506L07Rik|D4Bwg1540e|Soc|Soci|Ubxd5	UBX domain protein 11	protein-coding	3.0	8.0	10.5	5.5	8.5	5.0
Merged-chr16-36663717-4	chr16	36663219	36664219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	2358.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-48444238-4	chr6	48443750	48444750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355746, intron 1 of 4)	intron (NM_001355746, intron 1 of 4)	840.0	NM_001085415	68910.0	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	0.0	5.5	20.0	2.5	1.0	6.5
Merged-chr5-75043980-2	chr5	75043468	75044468	+	1000.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_028850, intron 1 of 5)	intron (NM_028850, intron 1 of 5)	673.0	NM_028850	74277.0	Mm.239814	NM_028850	ENSMUSG00000029229	Chic2	1700081B18Rik|4930502K01Rik|BTL	cysteine-rich hydrophobic domain 2	protein-coding	20.5	35.0	24.0	11.0	13.5	13.5
Merged-chr4-20041804-1	chr4	20041304	20042304	+	1000.0	f1_balb.idr	promoter-TSS (NM_010281)	promoter-TSS (NM_010281)	-248.0	NM_010281	14590.0	Mm.20461	NM_010281	ENSMUSG00000073987	Ggh	gamma-GH	gamma-glutamyl hydrolase	protein-coding	11.0	16.0	7.5	3.0	0.5	9.5
Merged-chr16-81437665-4	chr16	81437129	81438129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010954, exon 4 of 16)	exon (NM_010954, exon 4 of 16)	236932.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-97345316-4	chr5	97344824	97345824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	47006.0	NM_001033191	97243.0	Mm.11746	NM_001033191	ENSMUSG00000046000	Naa11	Ard1b|Ard2|C80008	N(alpha)-acetyltransferase 11, NatA catalytic subunit	protein-coding	18.5	12.5	14.0	10.5	27.0	11.0
Merged-chr2-52960475-2	chr2	52959975	52960975	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	102607.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93810126-4	chr16	93809648	93810648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027293, exon 37 of 37)	exon (NM_027293, exon 37 of 37)	-15247.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35939725-4	chr18	35939219	35940219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-25111.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126804266-4	chr8	126803764	126804764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44756.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80101928-2	chr10	80101428	80102428	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359635)	promoter-TSS (NM_001359635)	-741.0	NM_001359635	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37613673-4	chr9	37613163	37614163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324545)	promoter-TSS (NM_001324545)	57.0	NM_011449	20686.0	Mm.8637	NM_011449	ENSMUSG00000001948	Spa17	Sp17	sperm autoantigenic protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-40958809-4	chr14	40958325	40959325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	8071.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-104494597-4	chr2	104494096	104495096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145824)	promoter-TSS (NM_001145824)	-107.0	NM_001145824	15259.0	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	14.5	1.5	3.0	3.5	6.0	2.0
Merged-chr3-135597156-4	chr3	135596664	135597664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 17 of 24)	intron (NM_008689, intron 17 of 24)	94383.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	11.5	8.0	10.5	15.5	14.5	9.0
Merged-chr17-28407659-4	chr17	28407169	28408169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 8 of 10)	intron (NM_010220, intron 8 of 10)	-42453.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-75044629-4	chr5	75044124	75045124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028850)	promoter-TSS (NM_028850)	17.0	NM_028850	74277.0	Mm.239814	NM_028850	ENSMUSG00000029229	Chic2	1700081B18Rik|4930502K01Rik|BTL	cysteine-rich hydrophobic domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-18899273-4	chr8	18898751	18899751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51620.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr11-117832424-4	chr11	117831930	117832930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027827, exon 3 of 11)	exon (NM_027827, exon 3 of 11)	-6416.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-4942701-1	chr13	4942201	4943201	+	1000.0	f0_c57.idr	Intergenic	IAPLTR2_Mm|LTR|ERVK	-333537.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-66940535-4	chr10	66940012	66941012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20128.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-167336602-4	chr1	167336093	167337093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-13398.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-119157249-4	chr12	119156751	119157751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81025.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130718589-3	chr5	130718096	130719096	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021371, intron 4 of 5)	ORR1E|LTR|ERVL-MaLR	269804.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-59248136-4	chr3	59247655	59248655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 24 of 43)	intron (NM_177855, intron 24 of 43)	14830.0	NM_027571	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	14.5	12.0	3.0	1.0	6.0	11.5
Merged-chr14-25459635-3	chr14	25459151	25460151	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	CpG	466.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-22749995-4	chr2	22749512	22750512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24315.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124050240-4	chr5	124049738	124050738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17978.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	140.5	362.5	215.5	118.0	250.0	239.5
Merged-chr1-153803711-4	chr1	153803200	153804200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243223, intron 13 of 20)	intron (NM_001243223, intron 13 of 20)	40441.0	NM_001243223	240816.0	Mm.329340	NM_001243223	ENSMUSG00000042641	Rgsl1	4930415K13Rik|Gm202|Rgsl2	regulator of G-protein signaling like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-73647581-4	chr5	73647107	73648107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011890, intron 1 of 5)	CpG	124.0	NM_011890	24051.0	Mm.89310	NM_011890	ENSMUSG00000029156	Sgcb	43kDa|AI747103|AI844814|beta-SG	sarcoglycan, beta (dystrophin-associated glycoprotein)	protein-coding	1.0	0.5	3.0	0.0	3.0	1.5
Merged-chr13-21941082-4	chr13	21940582	21941582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4012.0	NM_183014	193452.0	Mm.187446	NM_183014	ENSMUSG00000006720	Zfp184	4930500C15Rik	zinc finger protein 184 (Kruppel-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41017951-2	chr13	41017451	41018451	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360770, intron 2 of 4)	intron (NM_001360770, intron 2 of 4)	1701.0	NM_001360770	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53303562-4	chr19	53303070	53304070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-6936.0	NM_001008542	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-89569224-4	chr1	89568726	89569726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	114415.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-55959327-7	chr17	55958893	55959893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_108021)	promoter-TSS (NR_108021)	8.0	NR_108021	100504333.0	Mm.391908	NR_108021	ENSMUSG00000097077	Gm16712	-	predicted gene, 16712	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60454656-4	chr11	60454179	60455179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021354)	promoter-TSS (NM_021354)	88.0	NM_021354	13495.0	Mm.41803	NM_021354	ENSMUSG00000020537	Drg2	AI255295|AI461605|DRG-2	developmentally regulated GTP binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44415017-5	chr11	44414470	44415470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001303244)	TTS (NM_001303244)	14907.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	113.0	361.5	188.0	140.0	258.0	248.0
Merged-chr17-84365518-4	chr17	84365032	84366032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 26 of 37)	intron (NM_183021, intron 26 of 37)	100676.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-53401261-4	chr5	53400748	53401748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134142.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102061392-4	chr5	102060885	102061885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	8536.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	19.0	25.5	43.0	25.5	46.5	37.5
Merged-chr8-41043737-4	chr8	41043219	41044219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 5 of 13)	intron (NM_001005863, intron 5 of 13)	-1788.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	34.5	53.5	45.5	30.5	64.5	35.0
Merged-chr1-189707284-4	chr1	189706786	189707786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19200.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	4.0	25.0	7.5	3.0	6.0	5.0
Merged-chr7-111028876-4	chr7	111028408	111029408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009431)	promoter-TSS (NM_009431)	-43.0	NM_009431	22083.0	Mm.255858	NM_009431	ENSMUSG00000005609	Ctr9	AA409336|Sh2bp1|Tsbp|Tsp|mKIAA0155	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-51147948-6	chr2	51147449	51148449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028810, intron 2 of 4)	CpG	1162.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-96898366-4	chr5	96897860	96898860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22912.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	0.0	10.0	2.0	0.5	3.0	13.5
Merged-chr16-17928083-6	chr16	17927511	17928511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153150, exon 1 of 9)	exon (NM_153150, exon 1 of 9)	208.0	NM_153150	13358.0	Mm.229291	NM_153150	ENSMUSG00000003528	Slc25a1	1300019P08Rik|2610100G11Rik|AI194714|Ctp|Dgsj|Slc20a3	solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128821777-4	chr10	128821285	128822285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153109)	promoter-TSS (NR_153109)	21.0	NR_153109	66118.0	Mm.235562	NM_025364	ENSMUSG00000078427	Sarnp	1110005A23Rik|Cip29	SAP domain containing ribonucleoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-18943559-4	chr10	18943039	18944039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41B|LTR|ERVL	68424.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	3.5	13.5	6.0	9.5	4.0	8.5
Merged-chr13-58568829-2	chr13	58568329	58569329	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022317, intron 11 of 17)	intron (NM_022317, intron 11 of 17)	42048.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115489525-2	chr5	115489025	115490025	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	U4|snRNA|snRNA	-5041.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	128.5	322.0	201.5	129.5	317.5	183.0
Merged-chr6-149566059-4	chr6	149565606	149566606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360951)	promoter-TSS (NM_001360951)	24.0	NM_001360951	436100.0		NM_001360951		Gm21814	6620401J10Rik	predicted gene, 21814	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-51376829-4	chr2	51376339	51377339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61061.0	NR_130155	73375.0	Mm.396227	NR_130155	ENSMUSG00000086007	1700057H21Rik	-	RIKEN cDNA 1700057H21 gene	ncRNA	0.0	3.0	0.5	0.0	4.5	4.5
Merged-chr6-28487656-2	chr6	28487156	28488156	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 1 of 23)	intron (NM_019776, intron 1 of 23)	7308.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35022013-4	chr18	35021528	35022528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67677.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-104550239-1	chr11	104549739	104550739	+	1000.0	f0_balb.idr	promoter-TSS (NM_010858)	promoter-TSS (NM_010858)	381.0	NM_001285990	217232.0	Mm.89845	NM_145436	ENSMUSG00000020687	Cdc27	AI452358|APC3|BC023187	cell division cycle 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95232760-4	chr10	95232242	95233242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	-86917.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73607678-4	chr12	73607157	73608157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	22861.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	7.0	33.0	28.0	26.5	52.0	24.5
Merged-chr10-81496461-4	chr10	81495962	81496962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134009)	promoter-TSS (NM_134009)	-99.0	NM_134009	103425.0	Mm.302791	NM_134009	ENSMUSG00000020238	Ncln	3100002P13Rik|AW120537	nicalin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54900486-4	chr18	54899975	54900975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	89705.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	41.0	103.0	75.0	41.5	109.0	73.5
Merged-chr8-46211066-4	chr8	46210574	46211574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007450)	promoter-TSS (NM_007450)	-12.0	NM_007450	11739.0	Mm.16228	NM_007450	ENSMUSG00000031633	Slc25a4	AU019225|Ant1|mANC1	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142629478-4	chr5	142628996	142629996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178398)	promoter-TSS (NM_178398)	-88.0	NM_178398	74781.0	Mm.29432	NM_178398	ENSMUSG00000029578	Wipi2	1110018O08Rik|2510001I10Rik	WD repeat domain, phosphoinositide interacting 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91747936-2	chr12	91747436	91748436	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	38500.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53354032-2	chr15	53353532	53354532	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7849.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83165412-4	chr8	83164891	83165891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027758)	promoter-TSS (NM_027758)	39.0	NM_027758	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	116.5	282.5	219.5	123.0	356.5	257.5
Merged-chr17-72904018-4	chr17	72903514	72904514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14291.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	10.5	9.5	24.0	24.0	40.5	29.5
Merged-chr8-70865802-4	chr8	70865284	70866284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	7706.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	78.5	231.5	97.5	114.5	231.5	145.0
Merged-chr4-59331907-4	chr4	59331408	59332408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 13 of 16)	intron (NM_001163288, intron 13 of 16)	71857.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	9.0	36.0	27.5	18.5	76.5	44.0
Merged-chr7-31111231-4	chr7	31110722	31111722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276269)	promoter-TSS (NM_001276269)	-225.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	49.0	64.0	77.0	66.0	108.5	72.5
Merged-chr5-90903229-2	chr5	90902727	90903727	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_009140)	promoter-TSS (NM_009140)	-672.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	27.5	35.0	20.0	13.5	22.0	33.5
Merged-chr18-80707770-4	chr18	80707263	80708263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 1 of 9)	CpG	410.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56721215-4	chr19	56720736	56721736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1136.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31974398-4	chr2	31973920	31974920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172268)	promoter-TSS (NM_172268)	-30.0	NM_172268	227720.0	Mm.289686	NM_172268	ENSMUSG00000001855	Nup214	BC039282|CAN|D2H9S46E	nucleoporin 214	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129360317-4	chr2	129359819	129360819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9583.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	37.5	68.5	51.5	32.0	96.5	48.0
Merged-chr1-161131479-4	chr1	161130931	161131931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039482)	promoter-TSS (NM_001039482)	48.0	NM_001039482	226541.0	Mm.255165	NM_144876	ENSMUSG00000026705	Klhl20	AI504637|D930050H05Rik|Kleip|mKIAA4210	kelch-like 20	protein-coding	1.0	5.5	4.5	0.0	0.0	3.0
Merged-chr12-17770750-4	chr12	17770245	17771245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361645, intron 2 of 4)	intron (NM_001361645, intron 2 of 4)	79936.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5806563-2	chr19	5806063	5807063	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3891.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122894739-4	chr10	122894238	122895238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 6 of 9)	intron (NM_001110218, intron 6 of 9)	90986.0	NR_029527	387251.0		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3356081-4	chr5	3355578	3356578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	12185.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	4.0	15.5	12.0	11.5	4.5	18.5
Merged-chr12-111433732-2	chr12	111433232	111434232	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-8929.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5806513-4	chr18	5806020	5807020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	213873.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	22.5	6.5	16.5	25.0	45.5	29.5
Merged-chr18-49642938-4	chr18	49642413	49643413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112688.0	NM_001170960	68857.0	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137871622-4	chr4	137871112	137872112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	9375.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	2.0	31.5	18.0	30.5	56.0	39.0
Merged-chr4-107364316-4	chr4	107363811	107364811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3473.0	NM_028355	72787.0	Mm.28478	NM_028355	ENSMUSG00000028614	Ndc1	2810475A17Rik|AI450313|Tmem48|sks	NDC1 transmembrane nucleoporin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129811576-4	chr4	129811073	129812073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-8906.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	73.5	220.5	170.5	79.0	188.5	158.5
Merged-chr5-108629179-2	chr5	108628678	108629678	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_028223)	promoter-TSS (NM_028223)	599.0	NM_001359924	231580.0	Mm.276647	NM_153569	ENSMUSG00000062234	Gak	D130045N16Rik	cyclin G associated kinase	protein-coding	1.5	8.0	7.5	4.5	23.5	15.5
Merged-chr17-35210346-4	chr17	35209828	35210828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4977.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20123559-4	chr10	20123027	20124027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 23 of 29)	intron (NM_008580, intron 23 of 29)	-25393.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	2.5	15.5	12.5	10.0	8.0	21.5
Merged-chr6-50458109-4	chr6	50457611	50458611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1757.0	NM_001347213	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4325347-4	chr18	4324843	4325843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	27610.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-67272546-4	chr14	67272031	67273031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360202, intron 6 of 15)	intron (NM_001360202, intron 6 of 15)	37887.0	NM_001360202	13592.0	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170555084-4	chr1	170554575	170555575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 1 of 9)	intron (NM_001109985, intron 1 of 9)	2035.0	NM_027528	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-60982772-3	chr8	60982252	60983252	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173873, intron 1 of 12)	CpG	559.0	NM_173873	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45758120-4	chr17	45757624	45758624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	URR1A|DNA|hAT-Charlie	23618.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	9.0	15.5	14.5	49.5	85.0	47.5
Merged-chr1-151287725-4	chr1	151287226	151288226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56760.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53150709-4	chr4	53150245	53151245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	9150.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135948389-4	chr4	135947864	135948864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357529, exon 1 of 9)	5' UTR (NM_001357529, exon 1 of 9)	958.0	NM_001357530	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59261755-4	chr10	59261223	59262223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	39801.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-32538330-2	chr6	32537830	32538830	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 1 of 31)	intron (NM_175750, intron 1 of 31)	27189.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26978086-4	chr8	26977587	26978587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101502, intron 1 of 1)	CpG	751.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17910315-4	chr17	17909787	17910787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	22463.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	38.0	90.0	53.0	54.0	102.0	64.5
Merged-chr12-40585090-4	chr12	40584564	40585564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	139011.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51938897-4	chr11	51938410	51939410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-28721.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117714112-2	chr10	117713612	117714612	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3354.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	1.0	5.0	3.0	1.0	5.0	3.0
Merged-chr13-37994208-4	chr13	37993737	37994737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025965)	promoter-TSS (NM_025965)	-29.0	NM_001360842	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	31.0	105.5	63.0	16.5	12.0	7.5
Merged-chr12-4488565-4	chr12	4488055	4489055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11373.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117861179-2	chr11	117860679	117861679	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085535, intron 1 of 3)	intron (NM_001085535, intron 1 of 3)	427.0	NM_001085535	546519.0	Mm.385578	NM_001085535	ENSMUSG00000070330	Tmem235	Cldn27|Gm12581	transmembrane protein 235	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132597414-4	chr2	132596913	132597913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033469)	promoter-TSS (NR_033469)	-783.0	NR_033468	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102982978-4	chr2	102982481	102983481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81316.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.5	0.0	2.0	3.5	3.0	7.5
Merged-chr13-98880433-2	chr13	98879933	98880933	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 4 of 23)	intron (NM_178716, intron 4 of 23)	10609.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-66535272-4	chr6	66534774	66535774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019499)	promoter-TSS (NM_019499)	53.0	NM_001355624	56150.0	Mm.489653	NM_019499	ENSMUSG00000029910	Mad2l1	AA673185|MAD2	MAD2 mitotic arrest deficient-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20542993-4	chr11	20542497	20543497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021372)	promoter-TSS (NM_021372)	-256.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	19.0	22.5	13.5	10.0	65.0	40.5
Merged-chr5-64211497-4	chr5	64210986	64211986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	RCHARR1|DNA|hAT-Charlie	-18871.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147911312-4	chr5	147910804	147911804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16489.0	NM_027872	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	2.0	3.0	3.5	0.0	0.0	0.0
Merged-chr10-78465734-4	chr10	78465234	78466234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172134)	promoter-TSS (NM_172134)	-786.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-85071960-4	chr16	85071452	85072452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 5 of 15)	intron (NM_001198825, intron 5 of 15)	99741.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	113.0	195.0	132.0	71.0	164.0	155.5
Merged-chr19-10182907-4	chr19	10182441	10183441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146094)	promoter-TSS (NM_146094)	53.0	NM_146094	76267.0	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	3.0	13.5	7.0	20.5	22.0	18.5
Merged-chr12-17773899-4	chr12	17773421	17774421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361645, intron 2 of 4)	intron (NM_001361645, intron 2 of 4)	83112.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13304050-4	chr10	13303562	13304562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	20227.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	7.0	6.0	9.0	6.5	6.5	18.0
Merged-chr1-169969316-4	chr1	169968818	169969818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040438)	promoter-TSS (NR_040438)	-91.0	NR_040438	67303.0	Mm.396611	NR_040438	ENSMUSG00000097503	3110045C21Rik	AI838577	RIKEN cDNA 3110045C21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4257740-4	chr19	4257250	4258250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6128.0	NR_105951	102465595.0		NR_105951	ENSMUSG00000099290	Mir6985	Gm27719|mmu-mir-6985	microRNA 6985	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128744857-4	chr7	128744359	128745359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029982)	promoter-TSS (NM_001029982)	-11.0	NM_001029982	207352.0	Mm.297105	NM_001029982	ENSMUSG00000055319	Sec23ip	D7Ertd373e|p125	Sec23 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25909975-2	chr15	25909475	25910475	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 3 of 8)	intron (NM_001034851, intron 3 of 8)	-23577.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148399357-4	chr5	148398855	148399855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007513, intron 1 of 12)	CpG	549.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	9.5	7.0	5.0	13.5	22.0	22.0
Merged-chr3-8972246-2	chr3	8971746	8972746	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	B1_Mur2|SINE|Alu	-8100.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	3.0	0.0	0.5	2.0	0.0	0.0
Merged-chr3-88177678-4	chr3	88177181	88178181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045997, exon 1 of 3)	non-coding (NR_045997, exon 1 of 3)	104.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-57826570-1	chr18	57826070	57827070	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-34237.0	NR_152225	100503033.0	Mm.381112	NR_152224		Gm19519	-	predicted gene, 19519	ncRNA	0.0	5.0	1.5	0.0	7.5	5.5
Merged-chr4-150656125-4	chr4	150655645	150656645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3971.0	NM_173774	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37434234-4	chr13	37433730	37434730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88885.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-78658416-1	chr1	78657916	78658916	+	1000.0	f1_balb.idr	promoter-TSS (NM_001136226)	promoter-TSS (NM_001136226)	-24.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	6.0	11.0	8.0	0.0	14.5	3.0
Merged-chr2-127845556-2	chr2	127845056	127846056	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9072.0	NM_028765	74121.0	Mm.244835	NM_028765	ENSMUSG00000027380	Acoxl	1200014P05Rik|AV025673	acyl-Coenzyme A oxidase-like	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr10-90983225-3	chr10	90982723	90983723	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	99520.0	NM_001042558	11783.0	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	2.0	4.5	1.5	0.0	0.0	1.0
Merged-chr4-128610190-4	chr4	128609692	128610692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177758)	promoter-TSS (NM_177758)	-94.0	NM_177758	269585.0	Mm.153291	NM_177758	ENSMUSG00000061894	Zscan20	C130001F22|Zfp31|Zkscan20	zinc finger and SCAN domains 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-38930925-4	chr19	38930426	38931426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008234)	promoter-TSS (NM_008234)	-64.0	NM_008234	15201.0	Mm.57223	NM_008234	ENSMUSG00000025001	Hells	AI323785|E130115I21Rik|LSH|Lysh|PASG|YFK8	helicase, lymphoid specific	protein-coding	2.5	0.5	1.5	0.0	2.0	2.5
Merged-chr13-5888354-4	chr13	5887844	5888844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26855.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95552226-4	chr9	95551730	95552730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7587.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-117841174-4	chr6	117840671	117841671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346652)	promoter-TSS (NM_001346652)	-10.0	NM_001346649	232337.0	Mm.290847	NM_177684	ENSMUSG00000059689	Zfp637	AI646709|BC021601|Znf32	zinc finger protein 637	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-118135048-4	chr4	118134540	118135540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161774)	promoter-TSS (NM_001161774)	-94.0	NM_001161774	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-94310179-4	chr3	94309700	94310700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029431)	promoter-TSS (NM_029431)	68.0	NM_029431	75778.0	Mm.45092	NM_029431	ENSMUSG00000028145	Them4	2700077M13Rik|4921507I02Rik	thioesterase superfamily member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53944108-4	chr19	53943646	53944646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355242)	promoter-TSS (NM_001355242)	-160.0	NM_001168505	56392.0	Mm.228669	NM_019658	ENSMUSG00000024976	Shoc2	AU017287|Sur8|mKIAA0862	soc-2 (suppressor of clear) homolog (C. elegans)	protein-coding	29.0	40.5	49.5	25.0	39.0	37.5
Merged-chr7-28209139-4	chr7	28208649	28209649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	28833.0	NM_001271370	13549.0	Mm.57249	NM_010092	ENSMUSG00000002409	Dyrk1b	Mirk	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141009154-4	chr7	141008655	141009655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025378)	TTS (NM_025378)	1589.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-4616812-4	chr13	4616324	4617324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7660.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	18.0	36.0	22.5	6.5	17.0	24.0
Merged-chr3-105053045-4	chr3	105052526	105053526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163332)	promoter-TSS (NM_001163332)	-73.0	NM_001163333	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123962624-4	chr4	123962137	123963137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	45204.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-7913999-4	chr14	7913482	7914482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081427, intron 25 of 45)	intron (NM_001081427, intron 25 of 45)	80200.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142794778-4	chr5	142794294	142795294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178242, intron 2 of 15)	intron (NM_178242, intron 2 of 15)	22593.0	NM_178242	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25250799-4	chr7	25250317	25251317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010155)	promoter-TSS (NM_010155)	-59.0	NM_010155	13875.0	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-43238731-2	chr9	43238231	43239231	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178644, intron 1 of 3)	intron (NM_178644, intron 1 of 3)	1085.0	NM_178644	102644.0	Mm.246479	NM_178644	ENSMUSG00000032014	Oaf	AL024221|D130038B21Rik|D9Ucla1	out at first homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6298883-2	chr19	6298383	6299383	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010119, exon 5 of 5)	3' UTR (NM_010119, exon 5 of 5)	-7574.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55458381-4	chr11	55457875	55458875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 1 of 3)	intron (NM_009720, intron 1 of 3)	2833.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32800343-4	chr4	32799843	32800843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175364)	promoter-TSS (NM_175364)	84.0	NM_175364	108755.0	Mm.1182	NM_175364	ENSMUSG00000045854	Lyrm2	2610208E05Rik	LYR motif containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-46717177-4	chr7	46716658	46717658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1482.0	NM_011315	20210.0	Mm.14277	NM_011315	ENSMUSG00000040026	Saa3	AV098916|Saa-3|l7R3	serum amyloid A 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116672953-4	chr4	116672464	116673464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12635.0	NM_011034	18477.0	Mm.30929	NM_011034	ENSMUSG00000028691	Prdx1	MSP23|NkefA|OSF-3|OSF3|PAG|Paga|PrdxI|PrxI|TDX2|TPxA|Tdpx2|prx1	peroxiredoxin 1	protein-coding	5.5	9.5	15.5	5.5	9.5	14.5
Merged-chr4-63403323-4	chr4	63402815	63403815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001045514, exon 1 of 22)	5' UTR (NM_001045514, exon 1 of 22)	130.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84466257-4	chr17	84465782	84466782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183021)	promoter-TSS (NM_183021)	-74.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56139470-2	chr17	56138970	56139970	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130456, intron 1 of 16)	intron (NM_001130456, intron 1 of 16)	873.0	NM_001130456	20359.0	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20934902-4	chr11	20934413	20935413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	-103805.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	5.5	20.0	10.0	3.0	15.5	7.0
Merged-chr2-165969022-4	chr2	165968530	165969530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23607.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	103.5	260.5	161.5	93.5	220.5	195.0
Merged-chr9-108649913-4	chr9	108649408	108650408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011790)	promoter-TSS (NM_011790)	-500.0	NM_001357286	23807.0	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4250723-4	chr8	4250142	4251142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195258, intron 5 of 6)	intron (NM_001195258, intron 5 of 6)	2428.0	NM_001195258	100044509.0	Mm.439193	NM_001195258	ENSMUSG00000089736	Tgfbr3l	Gm14378	transforming growth factor, beta receptor III-like	protein-coding	3.0	7.0	3.5	3.0	0.0	0.5
Merged-chr6-34909372-2	chr6	34908872	34909872	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001013366, exon 2 of 15)	exon (NM_001013366, exon 2 of 15)	1459.0	NM_001013366	101240.0	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-23785799-2	chr5	23785299	23786299	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-1912.0	NM_177323	72772.0	Mm.133300	NM_177323	ENSMUSG00000028999	Rint1	1500019C06Rik|2810450M21Rik|Rint-1	RAD50 interactor 1	protein-coding	1.5	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111967004-4	chr12	111966446	111967446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361914)	promoter-TSS (NM_001361914)	63.0	NM_027360	70257.0	Mm.318	NM_027360	ENSMUSG00000021290	2010107E04Rik	9430003J03Rik|AU043134|AV124504|Mp68	RIKEN cDNA 2010107E04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165764250-4	chr1	165763742	165764742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011804, intron 1 of 3)	intron (NM_011804, intron 1 of 3)	484.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69418183-4	chr11	69417699	69418699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4524.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	53.0	105.0	100.5	53.5	105.5	103.5
Merged-chr6-29271174-4	chr6	29270676	29271676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1312.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-84563108-2	chr6	84562608	84563608	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	30702.0	NM_175475	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36669707-4	chr16	36669198	36670198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3621.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129803584-4	chr4	129803092	129804092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16887.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	111.0	289.5	233.0	104.5	319.5	189.5
Merged-chr2-127247825-4	chr2	127247316	127248316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025296)	promoter-TSS (NM_025296)	0.0	NM_025296	26371.0	Mm.45179	NM_025296	ENSMUSG00000003662	Ciao1	AW210570|Wdr39	cytosolic iron-sulfur protein assembly 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-89081413-4	chr11	89080910	89081910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033266, intron 2 of 3)	L2|LINE|L2	7569.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	19.5	83.0	46.0	31.0	39.5	45.5
Merged-chr7-47055975-4	chr7	47055491	47056491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5351.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41381624-4	chr13	41381134	41382134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 2 of 7)	intron (NM_001111324, intron 2 of 7)	-22633.0	NM_017464	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98835649-4	chr12	98835165	98836165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081191, intron 21 of 43)	intron (NM_001081191, intron 21 of 43)	64643.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128803243-4	chr6	128802717	128803717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14576.0	NM_008527	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	13.0	9.5	15.5	8.5	12.5	13.0
Merged-chr5-93198400-4	chr5	93197882	93198882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017367, intron 2 of 6)	intron (NM_017367, intron 2 of 6)	8113.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	17.5	29.0	32.5	14.5	24.5	34.0
Merged-chr8-105693841-2	chr8	105693341	105694341	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357333, intron 29 of 38)	CpG	-7307.0	NM_001047436	56513.0	Mm.472753	NM_019695	ENSMUSG00000005699	Pard6a	0710008C04Rik|2610010A15Rik|PAR-6A|PAR6alpha|Par-6|Par6|Par6c|TAX40|Tip-40	par-6 family cell polarity regulator alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35748478-4	chr18	35747992	35748992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-7938.0	NM_001289592	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73627598-2	chr7	73627098	73628098	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58965.0	NR_033604	244061.0	Mm.484605	NR_033604	ENSMUSG00000108337	Gm4971	EG244061	Smad nuclear interacting protein 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34037645-4	chr13	34037145	34038145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026512)	promoter-TSS (NM_026512)	4.0	NM_026512	68021.0	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-51469399-4	chr6	51468919	51469919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016806, intron 1 of 10)	CpG	475.0	NR_104468	53379.0	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	253.5	621.0	472.0	322.0	671.0	423.5
Merged-chr7-90041779-4	chr7	90041280	90042280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110364, intron 5 of 5)	intron (NR_110364, intron 5 of 5)	12621.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	180.5	402.5	305.5	181.5	501.0	372.0
Merged-chr19-40998687-4	chr19	40998193	40999193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4158.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90482872-4	chr7	90482373	90483373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6878.0	NM_026734	68472.0	Mm.289791	NM_026734	ENSMUSG00000030614	Tmem126b	1110001A23Rik	transmembrane protein 126B	protein-coding	22.0	19.5	16.0	24.0	55.0	34.5
Merged-chr17-55752598-4	chr17	55752099	55753099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139138, intron 1 of 16)	intron (NM_139138, intron 1 of 16)	2615.0	NM_139138	52614.0	Mm.210497	NM_139138	ENSMUSG00000032915	Adgre4	D17Ertd479e|Egf-tm7|Emr4|Fire|Gpr127	adhesion G protein-coupled receptor E4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167701650-4	chr2	167701152	167702152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10475.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-88404324-4	chr9	88403805	88404805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172926, exon 12 of 28)	exon (NM_172926, exon 12 of 28)	34646.0	NM_001359958	244962.0	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100378663-4	chr11	100378162	100379162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010593, intron 7 of 13)	intron (NM_010593, intron 7 of 13)	19128.0	NM_010593	16480.0	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55557242-4	chr14	55556797	55557797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2732.0	NR_037572	28199.0	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21719893-4	chr16	21719415	21720415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25250.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35625874-4	chr8	35625397	35626397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-36877.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	10.0	20.5	34.5	15.5	47.0	56.0
Merged-chr6-37419305-4	chr6	37418808	37419808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	22840.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108855567-4	chr3	108855029	108856029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177091, exon 13 of 13)	3' UTR (NM_177091, exon 13 of 13)	-15027.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	69.0	161.0	107.0	16.0	51.5	33.5
Merged-chr4-115823712-1	chr4	115823212	115824212	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-4380.0	NM_175308	100465.0	Mm.35571	NM_175308	ENSMUSG00000028709	Mob3c	AW822253|D130076I06Rik|Mobkl2c	MOB kinase activator 3C	protein-coding	9.0	9.5	12.0	0.0	0.0	3.5
Merged-chr17-87530646-4	chr17	87530259	87531259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83824.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	5.0	15.0	24.0	3.5	14.0	18.5
Merged-chr5-120502713-2	chr5	120502213	120503213	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023625, intron 1 of 11)	intron (NM_023625, intron 1 of 11)	910.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37195205-4	chr10	37194711	37195711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56285.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21531024-4	chr13	21530425	21531425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001251834, intron 1 of 1)	CpG	189.0	NM_139141	93681.0	Mm.290601	NM_139141	ENSMUSG00000063894	Zkscan8	2510038J07Rik|D430019P06Rik|LD5-1|Zfp192	zinc finger with KRAB and SCAN domains 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9538794-4	chr18	9538308	9539308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80661.0	NM_007593	26369.0	Mm.195831	NM_007593	ENSMUSG00000050996	Cetn1	caltractin	centrin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-28071964-4	chr5	28071472	28072472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153526, intron 1 of 4)	intron (NM_153526, intron 1 of 4)	560.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50325745-4	chr11	50325229	50326229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007597)	promoter-TSS (NM_007597)	-56.0	NM_001110500	12330.0	Mm.248827	NM_007597	ENSMUSG00000020368	Canx	1110069N15Rik|AI988026|Cnx|D11Ertd153e	calnexin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7206257-5	chr19	7205684	7206684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134150)	promoter-TSS (NM_134150)	100.0	NM_134150	107260.0	Mm.203921	NM_134150	ENSMUSG00000024767	Otub1	AI850305	OTU domain, ubiquitin aldehyde binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43500304-4	chr1	43499814	43500814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	54563.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3388806-4	chr19	3388326	3389326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039658)	promoter-TSS (NM_001039658)	-31.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58730946-2	chr15	58730446	58731446	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	92481.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21045815-4	chr19	21045294	21046294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58916.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-51520871-4	chr6	51520358	51521358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-3045.0	NM_001361582	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	22.5	44.0	25.0	27.0	42.5	25.0
Merged-chr2-20968851-6	chr2	20968332	20969332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033225)	promoter-TSS (NR_033225)	-42.0	NR_033225	433408.0	Mm.386941	NR_033225		Gm13375	-	predicted gene 13375	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-51312215-4	chr2	51311742	51312742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70411.0	NR_040636	329404.0	Mm.417725	NR_040636	ENSMUSG00000086349	Gm13497	A730015I17	predicted gene 13497	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3360097-4	chr19	3359632	3360632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 5 of 18)	PB1D11|SINE|Alu	-28725.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11341341-4	chr8	11340845	11341845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009932, intron 3 of 47)	intron (NM_009932, intron 3 of 47)	-28519.0	NM_009931	12826.0	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120685673-2	chr8	120685173	120686173	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	17353.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4559051-2	chr16	4558551	4559551	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031182, intron 1 of 6)	CpG	669.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44381155-4	chr10	44380649	44381649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21473.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90290668-2	chr16	90290168	90291168	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAAA)n|Simple_repeat|Simple_repeat	-6165.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81627351-1	chr10	81626851	81627851	+	1000.0	f0_c57.idr	promoter-TSS (NM_001163430)	promoter-TSS (NM_001163430)	-29.0	NM_001163430	50721.0	Mm.25643	NM_181586	ENSMUSG00000034748	Sirt6	2810449N18Rik|AI043036|Sir2l6	sirtuin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138133575-3	chr4	138133082	138134082	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355700, intron 8 of 30)	intron (NM_001355700, intron 8 of 30)	4936.0	NR_126429	73563.0	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	16.0	6.0	0.5	32.0	62.0	32.5
Merged-chr5-122209935-3	chr5	122209418	122210418	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028752)	promoter-TSS (NM_028752)	189.0	NM_001042489	74096.0	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14879327-4	chr8	14878835	14879835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR31C_MM|LTR|ERVK	-9201.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143528106-4	chr5	143527598	143528598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009007)	promoter-TSS (NM_009007)	-67.0	NM_001347530	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34192268-4	chr19	34191772	34192772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360716)	promoter-TSS (NM_001360716)	43.0	NM_029682	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53532420-4	chr11	53531931	53532931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252333, intron 2 of 9)	intron (NM_001252333, intron 2 of 9)	12243.0	NM_001361969	20362.0	Mm.274399	NM_033144	ENSMUSG00000018398	Sept8	AW046166|Sepl	septin 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3135428-2	chr11	3134929	3135929	+	1000.0	f0_balb.idr|f1_balb.idr	exon (NM_030207, exon 27 of 33)	exon (NM_030207, exon 27 of 33)	11408.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61638124-4	chr18	61637600	61638600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1553.0	NR_045420	545261.0	Mm.426593	NR_045420	ENSMUSG00000098098	Bvht	Braveheart|Gm20748	braveheart long non-coding RNA	ncRNA	1.0	0.0	0.0	1.0	0.0	0.0
Merged-chr11-116682700-4	chr11	116682175	116683175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009180, intron 5 of 8)	intron (NM_009180, intron 5 of 8)	8078.0	NR_028570	100216538.0		NR_028570	ENSMUSG00000065094	Snord1a	snR38	small nucleolar RNA, C/D box 1A	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-78702555-3	chr1	78702057	78703057	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033606, intron 12 of 14)	intron (NM_001033606, intron 12 of 14)	44117.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	2.0	3.0	8.5	17.5	52.0	40.0
Merged-chr9-44510886-2	chr9	44510386	44511386	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007551)	TTS (NM_007551)	11750.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13161579-2	chr16	13161079	13162079	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51843.0	NM_015769	50505.0	Mm.287837	NM_015769	ENSMUSG00000022545	Ercc4	AI606920|Xpf	excision repair cross-complementing rodent repair deficiency, complementation group 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49853153-4	chr16	49852658	49853658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2496.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3346346-2	chr12	3345846	3346846	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18786.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-51469983-4	chr6	51469505	51470505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182650)	promoter-TSS (NM_182650)	-111.0	NM_016806	53379.0	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	144.0	252.5	161.5	137.5	260.0	180.5
Merged-chr17-84112631-2	chr17	84112131	84113131	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33971.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69061646-2	chr11	69061146	69062146	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028005)	TTS (NM_028005)	1871.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105706076-2	chr8	105705576	105706576	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198299, intron 4 of 7)	ID_B1|SINE|B4	2092.0	NM_198299	102124.0	Mm.276087	NM_198299	ENSMUSG00000013155	Enkd1	AI606951|E130303B06Rik	enkurin domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70976900-1	chr11	70976400	70977400	+	1000.0	f1_balb.idr	TTS (NM_007573)	TTS (NM_007573)	6126.0	NM_007573	12261.0	Mm.30049	NM_007573	ENSMUSG00000018446	C1qbp	AA407365|AA986492|D11Wsu182e|HABP1|P32|gC1qBP	complement component 1, q subcomponent binding protein	protein-coding	10.5	11.0	5.0	3.0	2.0	4.5
Merged-chr11-4895343-4	chr11	4894839	4895839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172438)	promoter-TSS (NM_172438)	-4.0	NM_172438	107829.0	Mm.28969	NM_172438	ENSMUSG00000034274	Thoc5	1700060C24Rik|A430085L24Rik|Fmip|PK1.3|Sgk2	THO complex 5	protein-coding	28.0	44.0	34.0	21.5	41.0	19.5
Merged-chr19-4097265-4	chr19	4096747	4097747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026373)	promoter-TSS (NM_026373)	-104.0	NM_026373	52004.0	Mm.29609	NM_026373	ENSMUSG00000024856	Cdk2ap2	5830466O21Rik|D19Ertd144e|Doc-1r	CDK2-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-54917164-4	chr9	54916657	54917657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177351)	promoter-TSS (NM_177351)	-133.0	NM_177351	235386.0	Mm.259334	NM_177351	ENSMUSG00000035878	Hykk	Agphd1|C630028N24Rik	hydroxylysine kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110058128-4	chr5	110057635	110058635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41834.0	NM_207279	403178.0	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-101597033-2	chr14	101596533	101597533	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	RMER1A|Other|Other	12158.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-13786164-4	chr2	13785664	13786664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145838, intron 2 of 7)	L1_Mus4|LINE|L1	7356.0	NM_145838	241230.0	Mm.330004	NM_145838	ENSMUSG00000003418	St8sia6	1700007J08Rik|AI314453|AI875066|ST8SiaVI|Siat8f	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-81788872-4	chr12	81788375	81789375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7705.0	NM_001174107	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55635009-4	chr13	55634590	55635590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282055)	promoter-TSS (NM_001282055)	91.0	NM_001282055	212880.0	Mm.202725	NM_145975	ENSMUSG00000021500	Ddx46	2200005K02Rik|8430438J23Rik|AI325430|AI957095|mKIAA0801	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9771414-4	chr4	9770910	9771910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030693, intron 1 of 3)	intron (NR_030693, intron 1 of 3)	825.0	NR_030693	320152.0	Mm.159946	NR_030693		4930412C18Rik	5730591J02Rik	RIKEN cDNA 4930412C18 gene	ncRNA	24.0	36.5	56.5	1.0	14.5	11.0
Merged-chr16-90677435-4	chr16	90676993	90677993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49878.0	NM_025642	66578.0	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54883756-2	chr14	54883256	54884256	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007537, intron 1 of 3)	intron (NM_007537, intron 1 of 3)	331.0	NM_007537	12050.0	Mm.6967	NM_007537	ENSMUSG00000089682	Bcl2l2	AW048834|Bcl-w|Gtrgal2|Gtrosa41|bclw|c98	BCL2-like 2	protein-coding	13.0	18.0	12.5	17.5	9.0	8.0
Merged-chr6-31059240-2	chr6	31058740	31059740	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	3507.0	NR_029744	387222.0		NR_029744	ENSMUSG00000065610	Mir29a	Mirn29a|mir-29a|mmu-mir-29a	microRNA 29a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97718545-4	chr11	97718038	97719038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_054051, exon 10 of 10)	3' UTR (NM_054051, exon 10 of 10)	15104.0	NM_011971	26446.0	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	18.0	47.5	52.0	21.0	40.0	44.0
Merged-chr2-143063034-4	chr2	143062544	143063544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021335)	promoter-TSS (NM_021335)	-25.0	NM_021335	20639.0	Mm.1323	NM_021335	ENSMUSG00000008333	Snrpb2	2810052G09Rik	U2 small nuclear ribonucleoprotein B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78183064-2	chr11	78182564	78183564	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037683)	promoter-TSS (NR_037683)	49.0	NR_037683	100529077.0		NR_037683		Snord42b	MBII-287|U42B	small nucleolar RNA, C/D box 42B	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-19690212-4	chr13	19689708	19690708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_181591, exon 7 of 17)	exon (NM_181591, exon 7 of 17)	7552.0	NM_001167909	73412.0	Mm.279939	NM_181591	ENSMUSG00000041138	Nme8	1700056P15Rik|Sptrx-2|Txndc3	NME/NM23 family member 8	protein-coding	20.5	47.0	19.0	9.5	58.5	23.5
Merged-chr13-56167613-2	chr13	56167113	56168113	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11272.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11332660-4	chr2	11332156	11333156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6833.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101087295-4	chr11	101086782	101087782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011550)	promoter-TSS (NM_011550)	-8.0	NM_011550	21428.0	Mm.628	NM_011550	ENSMUSG00000017801	Mlx	Tcfl4|Tf4|bHLHd13	MAX-like protein X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167319191-4	chr2	167318698	167319698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	29980.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119839793-4	chr8	119839309	119840309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	770.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132794224-4	chr4	132793716	132794716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033308, intron 1 of 5)	intron (NM_001033308, intron 1 of 5)	2148.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13835463-4	chr9	13834972	13835972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176836, intron 5 of 9)	intron (NM_176836, intron 5 of 9)	7756.0	NM_176836	72826.0	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95416854-4	chr10	95416365	95417365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045338)	promoter-TSS (NR_045338)	-8.0	NM_007706	216233.0	Mm.474283	NM_007706	ENSMUSG00000020027	Socs2	8030460M17|AI527257|AW108012|CIS2|Cish2|D130043N08Rik|JAB|SOCS-2|SSI-2|hg	suppressor of cytokine signaling 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32565176-4	chr4	32564683	32565683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109661, intron 3 of 4)	intron (NM_001109661, intron 3 of 4)	6479.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	190.5	353.5	212.0	147.5	306.5	183.5
Merged-chr5-134343192-1	chr5	134342692	134343692	+	1000.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	16738.0	NR_039544	100628570.0		NR_039544	ENSMUSG00000093311	Mir3965	mmu-mir-3965|mu-mir-3965	microRNA 3965	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102469089-4	chr12	102468577	102469577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199004)	promoter-TSS (NM_001199004)	-57.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	116.0	194.0	135.5	64.5	185.5	176.5
Merged-chr14-46884242-4	chr14	46883730	46884730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 1 of 12)	CpG	1265.0	NM_001037221	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	38.5	117.0	109.0	24.0	56.5	42.5
Merged-chr14-33216526-4	chr14	33216020	33217020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153800)	promoter-TSS (NM_153800)	-303.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91024538-2	chr1	91024038	91025038	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	25811.0	NM_001111312	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115142173-4	chr11	115141655	115142655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163753, intron 1 of 8)	intron (NM_001163753, intron 1 of 8)	-8163.0	NM_145634	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122912247-4	chr8	122911745	122912745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 3 of 12)	intron (NM_001081379, intron 3 of 12)	63871.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	5.0	7.0	5.5	1.0	2.5	5.5
Merged-chr8-84414409-3	chr8	84413906	84414906	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007578)	promoter-TSS (NM_007578)	-958.0	NM_001252060	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	0.0	5.5	1.0	32.0	68.5	55.0
Merged-chr13-37600381-4	chr13	37599878	37600878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-225660.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	36.5	94.0	70.0	47.5	86.5	70.0
Merged-chr10-45067736-2	chr10	45067236	45068236	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011156, intron 1 of 14)	intron (NM_011156, intron 1 of 14)	522.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-31168809-4	chr8	31168297	31169297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026453)	promoter-TSS (NM_026453)	-73.0	NM_026453	67920.0	Mm.289818	NM_026453	ENSMUSG00000031578	Mak16	2600016B03Rik|AI314911|Rbm13	MAK16 homolog	protein-coding	63.0	157.0	103.5	43.5	102.0	56.0
Merged-chr4-149326020-4	chr4	149325520	149326520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8619.0	NR_131918	74310.0	Mm.440455	NR_131918	ENSMUSG00000085286	Ube4bos3	1700121F15Rik	ubiquitination factor E4B, opposite strand 3	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132780467-4	chr4	132779969	132780969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12109.0	NM_011284	19891.0	Mm.2870	NM_011284	ENSMUSG00000028884	Rpa2	AA409079|AI325195|AU020965|RPA34|Rf-A2	replication protein A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-98015198-2	chr3	98014698	98015698	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	1660.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171466226-4	chr1	171465750	171466750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR73|LTR|ERV1	28689.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	21.5	39.5	31.5	12.5	59.0	29.0
Merged-chr2-163765129-3	chr2	163764647	163765647	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-14908.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	26.5	28.0	37.5	156.5	236.0	218.5
Merged-chr1-88699605-4	chr1	88699109	88700109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177305, exon 1 of 1)	3' UTR (NM_177305, exon 1 of 1)	2582.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164359896-4	chr2	164359409	164360409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3402.0	NM_011414	20568.0	Mm.371583	NM_011414	ENSMUSG00000017002	Slpi	ALP	secretory leukocyte peptidase inhibitor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117825871-4	chr11	117825309	117826309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027827)	promoter-TSS (NM_027827)	-110.0	NM_027827	71562.0	Mm.273958	NM_027827	ENSMUSG00000017718	Afmid	9030621K19Rik|Ammd|FKF|KFA|Kf|formylase	arylformamidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150609391-4	chr2	150608903	150609903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027977)	promoter-TSS (NM_027977)	-836.0	NM_001356492	71881.0	Mm.26599	NM_027977	ENSMUSG00000033096	Apmap	2310001A20Rik|AI314817	adipocyte plasma membrane associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121741098-4	chr11	121740597	121741597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38670.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34783844-4	chr11	34783326	34784326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033374)	promoter-TSS (NM_033374)	79.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115666847-4	chr6	115666347	115667347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029780, intron 1 of 16)	intron (NM_029780, intron 1 of 16)	9041.0	NM_001356334	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41124406-4	chr4	41123897	41124897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139236)	promoter-TSS (NM_139236)	-58.0	NM_139236	230082.0	Mm.285797	NM_139236	ENSMUSG00000028430	Nol6	AA410091|Nrap	nucleolar protein family 6 (RNA-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85002125-2	chr11	85001625	85002625	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029934, intron 29 of 33)	intron (NM_001029934, intron 29 of 33)	44371.0	NM_007607	12351.0	Mm.1641	NM_007607	ENSMUSG00000000805	Car4	AW456718|Ca4	carbonic anhydrase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112976527-4	chr12	112976024	112977024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145900)	promoter-TSS (NM_001145900)	-39.0	NM_201646	399566.0	Mm.440140	NM_201646	ENSMUSG00000002803	Btbd6	-	BTB (POZ) domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27618038-4	chr3	27617541	27618541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 4 of 26)	intron (NM_001356953, intron 4 of 26)	-33046.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55743911-4	chr14	55743420	55744420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026819, intron 2 of 8)	intron (NM_026819, intron 2 of 8)	1764.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100352321-2	chr11	100351822	100352822	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359052, intron 6 of 12)	intron (NM_001359052, intron 6 of 12)	3806.0	NM_001359052	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	5.5	0.0	4.0	0.5	0.0	0.5
Merged-chr2-167911527-2	chr2	167911027	167912027	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20800.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5771690-2	chr2	5771190	5772190	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-56928.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-89267285-4	chr9	89266757	89267757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55873.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	6.5	22.5	10.5	7.0	14.0	12.5
Merged-chr18-32376435-4	chr18	32375992	32376992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083334)	promoter-TSS (NM_001083334)	-725.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	92.0	233.0	133.0	69.5	123.5	107.0
Merged-chr19-5490428-4	chr19	5489930	5490930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007687)	promoter-TSS (NM_007687)	-25.0	NM_007687	12631.0	Mm.329655	NM_007687	ENSMUSG00000056201	Cfl1	AA959946|Cof	cofilin 1, non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108641573-2	chr12	108641073	108642073	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	5820.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29060254-4	chr2	29059766	29060766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009442)	promoter-TSS (NM_009442)	3.0	NM_009442	22130.0	Mm.252195	NM_009442	ENSMUSG00000026803	Ttf1	AV245725|TTF-1|TTF-I	transcription termination factor, RNA polymerase I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116145399-4	chr9	116144896	116145896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	29967.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	43.0	115.5	79.0	96.5	143.0	101.0
Merged-chr1-72243174-2	chr1	72242674	72243674	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155355)	promoter-TSS (NR_155355)	-819.0	NR_155355	320933.0	Mm.440953	NR_155355		D230017M19Rik	B930094L07Rik	RIKEN cDNA D230017M19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-26460270-4	chr12	26459753	26460753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3801.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	59.0	138.0	81.0	46.0	126.0	67.0
Merged-chr3-94837411-4	chr3	94836912	94837912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172683)	promoter-TSS (NM_172683)	-155.0	NM_001165948	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	10.0	4.0	4.5	0.0	13.5	6.5
Merged-chr8-105880886-4	chr8	105880397	105881397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181594)	promoter-TSS (NM_181594)	16.0	NM_181594	234699.0	Mm.28979	NM_181594	ENSMUSG00000036270	Edc4	BC022641	enhancer of mRNA decapping 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60383401-4	chr2	60382887	60383887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013825)	promoter-TSS (NM_013825)	-156.0	NM_013825	17076.0	Mm.2074	NM_013825	ENSMUSG00000026980	Ly75	CD205|DEC-205|DEC205	lymphocyte antigen 75	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-8691836-2	chr6	8691336	8692336	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252266, intron 5 of 11)	RMER17C|LTR|ERVK	66622.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54492253-4	chr11	54491767	54492767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173753, intron 9 of 17)	L1MB3|LINE|L1	-30578.0	NM_001252494	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41135370-4	chr4	41134843	41135843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026275)	promoter-TSS (NM_026275)	-678.0	NM_026275	67615.0	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-6310395-3	chr6	6309897	6310897	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136905, intron 1 of 3)	Tigger1|DNA|TcMar-Tigger	61738.0	NR_136905	101056138.0	Mm.389085	NR_136904	ENSMUSG00000093482	Gm20619	-	predicted gene 20619	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28233192-1	chr17	28232692	28233692	+	1000.0	f0_balb.idr	intron (NM_011145, intron 1 of 7)	intron (NM_011145, intron 1 of 7)	438.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81408992-4	chr10	81408483	81409483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152732)	promoter-TSS (NR_152732)	-592.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41951358-4	chr10	41950849	41951849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 11 of 17)	MTD|LTR|ERVL-MaLR	63910.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56548554-4	chr19	56548032	56549032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018831)	promoter-TSS (NM_018831)	271.0	NM_025811	66866.0	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13162320-4	chr8	13161824	13162824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010684, intron 1 of 8)	intron (NM_010684, intron 1 of 8)	3163.0	NM_010684	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-4767076-4	chr13	4766583	4767583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-157919.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	4.5	6.5	1.5	6.5	19.0	11.0
Merged-chr8-104247215-4	chr8	104246711	104247711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045642, intron 2 of 8)	intron (NR_045642, intron 2 of 8)	1347.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182528129-4	chr1	182527608	182528608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10498.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101551992-4	chr11	101551509	101552509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252223)	promoter-TSS (NM_001252223)	-54.0	NM_009764	12189.0	Mm.244975	NM_009764	ENSMUSG00000017146	Brca1	-	breast cancer 1, early onset	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43931503-2	chr1	43931003	43932003	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-2491.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65938475-2	chr18	65937975	65938975	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013833, intron 1 of 2)	CpG	614.0	NM_013833	19434.0	Mm.431047	NM_013833	ENSMUSG00000024518	Rax	7530406A22Rik|E130303K03Rik|Rx|ey-1|ey1	retina and anterior neural fold homeobox	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr7-44835612-4	chr7	44835107	44836107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010215)	promoter-TSS (NM_010215)	-681.0	NM_010215	14204.0	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	0.5	11.0	6.0	0.5	11.0	7.0
Merged-chr8-117067174-4	chr8	117066679	117067679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 6 of 42)	intron (NM_029686, intron 6 of 42)	15270.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-48554795-4	chr6	48554305	48555305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177736)	promoter-TSS (NM_177736)	6.0	NM_177736	243371.0	Mm.290764	NM_177736	ENSMUSG00000073096	Lrrc61	BC027309	leucine rich repeat containing 61	protein-coding	58.0	126.0	126.0	88.5	113.5	106.0
Merged-chr18-77841679-4	chr18	77841161	77842161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 2 of 14)	L1_Mur3|LINE|L1	-45271.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-135295775-3	chr6	135295275	135296275	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14609.0	NM_029595	76400.0	Mm.293018	NM_029595	ENSMUSG00000047104	Pbp2	1700023A18Rik|AI326308|Pebp-2|Pebp2	phosphatidylethanolamine binding protein 2	protein-coding	6.0	12.5	9.5	31.0	21.0	22.0
Merged-chr4-116630200-1	chr4	116629700	116630700	+	1000.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2249.0	NM_016777	50927.0	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-75556915-4	chr3	75556374	75557374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019745)	promoter-TSS (NM_019745)	-22.0	NM_019745	56426.0	Mm.316473	NM_019745	ENSMUSG00000027835	Pdcd10	2410003B13Rik|Ccm3|Tfa15|Tfar15	programmed cell death 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139313708-2	chr5	139313208	139314208	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 1 of 10)	intron (NM_172723, intron 1 of 10)	11756.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13256492-7	chr16	13256008	13257008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122667)	promoter-TSS (NM_001122667)	27.0	NM_001122667	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139252159-4	chr4	139251658	139252658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 2 of 9)	intron (NM_001037761, intron 2 of 9)	58047.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	74.0	140.0	125.5	64.5	89.5	82.0
Merged-chr2-167779617-2	chr2	167779117	167780117	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	88440.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-50296624-4	chr2	50296140	50297140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040361)	promoter-TSS (NR_040361)	161.0	NM_001348200	109129.0	Mm.29214	NM_133839	ENSMUSG00000026766	Mmadhc	2010311D03Rik|AI314967|CblD	methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50291896-4	chr6	50291406	50292406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30137.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-80919279-4	chr8	80918758	80919758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38739.0	NM_001301298	14388.0	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	2.5	7.5	6.5	2.0	9.0	4.0
Merged-chr2-143081910-4	chr2	143081397	143082397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_020595)	TTS (NM_020595)	3504.0	NM_020595	57329.0	Mm.157751	NM_020595	ENSMUSG00000027416	Otor	CDRAP|Fdp|MIA|MIAL	otoraplin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-13589923-4	chr1	13589411	13590411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028173)	promoter-TSS (NM_028173)	-1.0	NM_028173	72265.0	Mm.28765	NM_028173	ENSMUSG00000025935	Tram1	1810049E02Rik|TRAMP	translocating chain-associating membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44734538-6	chr9	44734081	44735081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153537, intron 1 of 21)	intron (NM_153537, intron 1 of 21)	617.0	NM_153537	102693.0	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4213595-4	chr19	4213095	4214095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310038)	promoter-TSS (NM_001310038)	-643.0	NR_132308	105948585.0	Mm.32518	NR_132308		Gm45928	Clcf1-pold4	predicted gene, 45928	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-123266047-4	chr6	123265540	123266540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163161, intron 2 of 5)	L1ME3A|LINE|L1	3933.0	NM_010819	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184729439-4	chr1	184728931	184729931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008250, intron 3 of 3)	intron (NM_008250, intron 3 of 3)	3062.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32647448-4	chr11	32646966	32647966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271349, intron 1 of 11)	intron (NM_001271349, intron 1 of 11)	4911.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0.0	12.0	13.0	1.0	0.0	9.0
Merged-chr19-6276723-4	chr19	6276218	6277218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010119)	promoter-TSS (NM_010119)	-178.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99180333-2	chr10	99179833	99180833	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	72198.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81176059-2	chr10	81175559	81176559	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007907)	promoter-TSS (NM_007907)	-572.0	NM_007907	13629.0	Mm.2903	NM_007907	ENSMUSG00000034994	Eef2	Ef-2	eukaryotic translation elongation factor 2	protein-coding	7.0	15.0	22.0	10.0	17.0	17.0
Merged-chr1-66817638-4	chr1	66817031	66818031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122738)	promoter-TSS (NM_001122738)	64.0	NM_177645	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84020742-4	chr12	84020227	84021227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11225.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	10.5	23.5	4.5	11.5	10.0	6.0
Merged-chr8-115429705-4	chr8	115429200	115430200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	277194.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45704908-4	chr7	45704417	45705417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016974)	promoter-TSS (NM_016974)	-330.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25016393-4	chr17	25015887	25016887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134126, exon 1 of 30)	5' UTR (NM_134126, exon 1 of 30)	301.0	NM_134126	106633.0	Mm.32802	NM_134126	ENSMUSG00000024169	Ift140	AI661311|Tce5|Wdtc2|mKIAA0590	intraflagellar transport 140	protein-coding	180.5	445.5	226.0	230.0	407.5	266.5
Merged-chr4-16088542-4	chr4	16088081	16089081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74693.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101143821-4	chr11	101143295	101144295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12089.0	NM_134028	103768.0	Mm.142348	NM_134028	ENSMUSG00000045007	Tubg2	AI504772|Tubgl	tubulin, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-50088919-4	chr18	50088424	50089424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134131, intron 1 of 1)	intron (NM_134131, intron 1 of 1)	-35262.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	25.0	29.5	36.5	30.5	34.0	23.5
Merged-chr14-52307454-4	chr14	52306954	52307954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-2330.0	NM_019721	56335.0	Mm.271759	NM_019721	ENSMUSG00000022160	Mettl3	2310024F18Rik|M6A|Spo8	methyltransferase like 3	protein-coding	19.5	3.5	20.5	15.0	3.0	17.0
Merged-chr15-36283221-4	chr15	36282703	36283703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013923)	promoter-TSS (NM_013923)	-56.0	NM_001357631	30945.0	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184536640-4	chr1	184536143	184537143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040472, intron 2 of 5)	intron (NR_040472, intron 2 of 5)	21048.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4541960-4	chr16	4541455	4542455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	17765.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40781766-1	chr9	40781266	40782266	+	1000.0	f1_balb.idr	intron (NM_133733, intron 6 of 6)	MTD|LTR|ERVL-MaLR	-19507.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	190.0	475.0	243.5	121.0	313.0	155.5
Merged-chr3-144719706-2	chr3	144719206	144720206	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 1 of 10)	CpG	629.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5870974-4	chr13	5870475	5871475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011803)	TTS (NM_011803)	9486.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12121413-4	chr18	12120908	12121908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001289666, exon 1 of 15)	exon (NM_001289666, exon 1 of 15)	129.0	NR_110356	338363.0	Mm.271567	NM_178801	ENSMUSG00000049411	Tmem241	6030446N20Rik	transmembrane protein 241	protein-coding	19.5	35.0	36.0	26.5	68.0	29.0
Merged-chr4-53069350-2	chr4	53068850	53069850	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 27 of 49)	intron (NM_013454, intron 27 of 49)	57470.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21472551-4	chr19	21472056	21473056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010266, exon 1 of 14)	5' UTR (NM_010266, exon 1 of 14)	105.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	1.5	0.0	2.5	0.0	4.5	0.0
Merged-chr11-51855641-4	chr11	51855150	51856150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357588, intron 1 of 12)	G-rich|Low_complexity|Low_complexity	1831.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122155460-2	chr14	122154960	122155960	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_080556, exon 16 of 17)	exon (NM_080556, exon 16 of 17)	-26234.0	NM_029556	69634.0	Mm.34608	NM_029556	ENSMUSG00000025545	Clybl	0610033J05Rik|2310014M14Rik|AI256068|Clb	citrate lyase beta like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44605208-7	chr9	44604713	44605713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357703, exon 1 of 14)	intron (NM_001110826, intron 1 of 13)	321.0	NM_181324	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112464014-4	chr13	112463519	112464519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010560)	promoter-TSS (NM_010560)	-51.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	27.0	41.0	38.5	22.5	53.0	31.5
Merged-chr9-21955925-7	chr9	21955398	21956398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025870, exon 1 of 2)	exon (NM_025870, exon 1 of 2)	108.0	NR_132099	100049077.0	Mm.46647	NR_132099		Gm45914	-	predicted gene, 45914	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30237620-4	chr2	30237077	30238077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028299)	promoter-TSS (NR_028299)	54.0	NR_028299	67350.0	Mm.402683	NR_028299		1700084E18Rik	-	RIKEN cDNA 1700084E18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126251893-4	chr4	126251392	126252392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145970, intron 1 of 16)	intron (NM_001145970, intron 1 of 16)	4427.0	NM_144941	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	19.5	19.5	23.0	14.0	12.0	11.5
Merged-chr11-80287362-2	chr11	80286862	80287862	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13550.0	NM_139228	246104.0	Mm.194148	NM_139228	ENSMUSG00000017692	Rhbdl3	AI847581|Rhbdl4|Rhomr1|Vrho	rhomboid like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70302551-4	chr8	70302075	70303075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021538)	promoter-TSS (NM_021538)	-123.0	NM_001024922	234374.0	Mm.388127	NM_001024922	ENSMUSG00000057788	Ddx49	R27090_2	DEAD (Asp-Glu-Ala-Asp) box polypeptide 49	protein-coding	68.0	114.0	131.5	71.5	131.5	114.5
Merged-chr14-56812904-4	chr14	56812405	56813405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152252, exon 1 of 1)	non-coding (NR_152252, exon 1 of 1)	916.0	NR_152252	100503842.0	Mm.297636	NR_152252	ENSMUSG00000100017	2410022M11Rik	-	RIKEN cDNA 2410022M11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-17414439-4	chr14	17413939	17414939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-246521.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124809653-4	chr6	124809115	124810115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009415)	TTS (NM_009415)	697.0	NM_001306053	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12824753-4	chr15	12824248	12825248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029998)	promoter-TSS (NM_029998)	-67.0	NM_026799	14000.0	Mm.293142	NM_026799	ENSMUSG00000022191	Drosha	1110013A17Rik|AI874853|Etohi2|Rn3|Rnasen	drosha, ribonuclease type III	protein-coding	20.0	86.5	86.5	78.0	69.0	100.0
Merged-chr2-130564244-2	chr2	130563771	130564771	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040348)	promoter-TSS (NR_040348)	514.0	NM_207207	99045.0	Mm.30057	NM_207207	ENSMUSG00000037740	Mrps26	AI648866|GI008|MRP-S13|MRP-S26|Rpms13	mitochondrial ribosomal protein S26	protein-coding	3.0	28.5	10.0	0.5	3.0	4.0
Merged-chr8-84815742-4	chr8	84815265	84816265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033145, exon 2 of 2)	non-coding (NR_033145, exon 2 of 2)	7058.0	NM_201227	23863.0	Mm.304252	NM_201227	ENSMUSG00000053226	Dand5	Cerl-2|Cerl2|Cerr2|Dte|GREM3|coco	DAN domain family member 5, BMP antagonist	protein-coding	0.0	0.0	4.0	0.0	9.0	0.5
Merged-chr2-102944863-2	chr2	102944363	102945363	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43198.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124481477-2	chr5	124480977	124481977	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1678.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-31145710-4	chr9	31145225	31146225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-13926.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45103832-4	chr7	45103335	45104335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010189)	promoter-TSS (NM_010189)	-13.0	NM_010189	14132.0	Mm.3303	NM_010189	ENSMUSG00000003420	Fcgrt	FcRn	Fc receptor, IgG, alpha chain transporter	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-57358549-4	chr19	57358063	57359063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040316, intron 1 of 2)	ORR1E|LTR|ERVL-MaLR	2336.0	NR_040316	320879.0	Mm.375089	NR_040316	ENSMUSG00000097785	B230217O12Rik	-	RIKEN cDNA B230217O12 gene	ncRNA	18.0	32.0	23.0	12.0	28.0	29.5
Merged-chr2-25429177-2	chr2	25428677	25429677	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007379, intron 1 of 47)	intron (NM_007379, intron 1 of 47)	503.0	NM_007379	11305.0	Mm.2210	NM_007379	ENSMUSG00000026944	Abca2	AI413825|Abc2|D2H0S1474E|mKIAA1062	ATP-binding cassette, sub-family A (ABC1), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4371236-4	chr16	4370753	4371753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009624, intron 2 of 10)	intron (NM_009624, intron 2 of 10)	49245.0	NM_001291910	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54442728-4	chr14	54442204	54443204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008608)	TTS (NM_008608)	11106.0	NM_008608	17387.0	Mm.280175	NM_008608	ENSMUSG00000000957	Mmp14	AI325305|MMP-X1|MT-MMP-1|MT1-MMP|sabe	matrix metallopeptidase 14 (membrane-inserted)	protein-coding	0.0	28.0	30.0	4.5	33.5	13.0
Merged-chr8-105701611-4	chr8	105701104	105702104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348349)	promoter-TSS (NM_001348349)	-43.0	NM_001047435	56513.0	Mm.472753	NM_019695	ENSMUSG00000005699	Pard6a	0710008C04Rik|2610010A15Rik|PAR-6A|PAR6alpha|Par-6|Par6|Par6c|TAX40|Tip-40	par-6 family cell polarity regulator alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98799028-6	chr10	98798502	98799502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115640.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78438299-2	chr10	78437799	78438799	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172134, exon 11 of 11)	3' UTR (NM_172134, exon 11 of 11)	3500.0	NR_105837	102465221.0		NR_105837	ENSMUSG00000098932	Mir6410	Gm27916|mmu-mir-6410	microRNA 6410	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53244916-2	chr18	53244416	53245416	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029394)	promoter-TSS (NM_029394)	-746.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	11.0	50.5	12.0	31.5	58.0	14.0
Merged-chr4-3678110-4	chr4	3677608	3678608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010747)	promoter-TSS (NM_010747)	-13.0	NM_001111096	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	0.0	38.5	24.5	8.0	20.0	13.0
Merged-chr12-3871079-4	chr12	3870559	3871559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 4 of 22)	intron (NM_007872, intron 4 of 22)	-8815.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-78624220-4	chr8	78623723	78624723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009981, intron 5 of 10)	intron (NM_001009981, intron 5 of 10)	114895.0	NM_001282108	76775.0	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-127043662-4	chr4	127043167	127044167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17487.0	NM_026670	68310.0	Mm.273806	NM_026670	ENSMUSG00000043872	Zmym1	5830412B09Rik|AW209050	zinc finger, MYM domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38712028-2	chr6	38711528	38712528	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 12 of 14)	intron (NM_010433, intron 12 of 14)	48959.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51520197-4	chr10	51519689	51520689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	29291.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127069558-2	chr10	127069058	127070058	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040660)	promoter-TSS (NR_040660)	703.0	NM_025982	67125.0	Mm.35650	NM_025982	ENSMUSG00000006736	Tspan31	2700085A14Rik|AW742554|Sas	tetraspanin 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13595003-4	chr8	13594513	13595513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 7 of 23)	intron (NM_009025, intron 7 of 23)	-32552.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69838445-4	chr11	69837944	69838944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026982)	promoter-TSS (NM_026982)	-81.0	NM_026982	69186.0	Mm.248772	NM_026982	ENSMUSG00000070394	Tmem256	1810027O10Rik|3110009M16Rik	transmembrane protein 256	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78482546-4	chr9	78482056	78483056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010106)	promoter-TSS (NM_010106)	-832.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29363305-4	chr17	29362802	29363802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013710, intron 1 of 15)	intron (NM_013710, intron 1 of 15)	2388.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	23.0	39.5	36.0	12.5	22.5	30.0
Merged-chr18-49850537-4	chr18	49850025	49851025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081371, intron 5 of 42)	intron (NM_001081371, intron 5 of 42)	17528.0	NM_001081371	240283.0	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-72491944-4	chr9	72491431	72492431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009359)	promoter-TSS (NM_009359)	28.0	NM_009359	21778.0	Mm.14485	NM_009359	ENSMUSG00000090626	Tex9	Gm19407|tsec-1	testis expressed gene 9	protein-coding	0.0	7.0	0.5	0.0	16.0	0.5
Merged-chr8-108848688-3	chr8	108848174	108849174	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 3 of 9)	intron (NM_007496, intron 3 of 9)	-88186.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	11.0	19.5	11.0	9.5	0.0	0.0
Merged-chr10-5288483-4	chr10	5287980	5288980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347711, intron 55 of 145)	intron (NM_001347711, intron 55 of 145)	-93773.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-56995031-4	chr9	56994543	56995543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019651)	promoter-TSS (NM_019651)	75.0	NM_019651	56294.0	Mm.325643	NM_019651	ENSMUSG00000032290	Ptpn9	MEG2	protein tyrosine phosphatase, non-receptor type 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79296351-4	chr12	79295873	79296873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252562)	promoter-TSS (NM_001252562)	-91.0	NM_001008550	211978.0	Mm.297919	NM_001008550	ENSMUSG00000066440	Zfyve26	4930465A13|9330197E15Rik|A630028O16Rik|Gm893|mKIAA0321	zinc finger, FYVE domain containing 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95316445-2	chr3	95315945	95316945	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029789, intron 1 of 10)	intron (NM_029789, intron 1 of 10)	1255.0	NM_029789	76893.0	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119344437-4	chr8	119343960	119344960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024219)	promoter-TSS (NM_024219)	-78.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45596272-1	chr17	45595772	45596772	+	1000.0	f1_balb.idr	promoter-TSS (NM_001199116)	promoter-TSS (NM_001199116)	-370.0	NM_001199114	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	3.5	15.5	8.0	3.5	15.5	7.0
Merged-chr3-67582753-4	chr3	67582244	67583244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025813)	promoter-TSS (NM_025813)	-24.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	16.0	58.5	50.5	20.5	45.5	45.0
Merged-chr10-13304868-4	chr10	13304355	13305355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	19434.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	21.0	11.5	15.0	18.5	37.5	20.5
Merged-chr17-70832760-4	chr17	70832280	70833280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13997.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102867944-4	chr2	102867456	102868456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	33709.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	9.0	15.0	17.0	3.5	10.5	10.0
Merged-chr3-135440296-4	chr3	135439800	135440800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356598, intron 2 of 8)	intron (NM_001356598, intron 2 of 8)	1174.0	NM_001356597	66105.0	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-87443826-4	chr12	87443312	87444312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026958)	promoter-TSS (NM_026958)	27.0	NM_001102565	211064.0	Mm.486235	NM_001102565	ENSMUSG00000079036	Alkbh1	2700073G19Rik|Abh|Alkbh|alkB|hABH	alkB homolog 1, histone H2A dioxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50974020-4	chr6	50973532	50974532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	197917.0	NR_045984	319981.0	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-51829486-4	chr12	51828987	51829987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144788)	promoter-TSS (NM_144788)	49.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	100.5	187.5	147.5	105.5	283.5	200.5
Merged-chr4-41760424-4	chr4	41759925	41760925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172054)	promoter-TSS (NM_001172054)	-18.0	NM_001163401	16157.0	Mm.193451	NM_010549	ENSMUSG00000073889	Il11ra1	AI314697|GP130|Il-11ra|Il11ra|Il11ra2|NR1	interleukin 11 receptor, alpha chain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29787046-4	chr11	29786549	29787549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 24 of 41)	intron (NM_146016, intron 24 of 41)	38619.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16407912-4	chr19	16407413	16408413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27754.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32138574-4	chr5	32138075	32139075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008037, intron 1 of 3)	intron (NM_008037, intron 1 of 3)	2103.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46075928-4	chr19	46075442	46076442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053086)	promoter-TSS (NM_053086)	95.0	NM_001039351	70769.0	Mm.402190	NM_053086	ENSMUSG00000015176	Nolc1	NOPP130|NOPP140|P130	nucleolar and coiled-body phosphoprotein 1	protein-coding	9.0	9.0	8.0	0.5	10.0	10.0
Merged-chr13-37772890-4	chr13	37772415	37773415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53123.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170154662-2	chr2	170154162	170155162	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11987.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9958054-4	chr18	9957558	9958558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153552)	promoter-TSS (NM_153552)	-122.0	NM_153552	225160.0	Mm.219648	NM_153552	ENSMUSG00000024287	Thoc1	3110002N20Rik|AW107452|NMP-84	THO complex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-4600946-4	chr6	4600443	4601443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145398)	promoter-TSS (NM_145398)	-123.0	NM_145398	213819.0	Mm.270703	NM_145398	ENSMUSG00000015189	Casd1	Cas1|Cast1|SOAT	CAS1 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-124016795-4	chr9	124016300	124017300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5171.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134102846-4	chr5	134102359	134103359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030719, intron 1 of 8)	intron (NM_030719, intron 1 of 8)	3111.0	NM_030719	80909.0	Mm.45218	NM_030719	ENSMUSG00000015944	Gatsl2	7530428J21Rik|AW742413|Castor2|Gats|Gatsl1	GATS protein-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118796737-4	chr10	118796258	118797258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72145.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-54807810-2	chr1	54807310	54808310	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 2 of 27)	intron (NM_001081433, intron 2 of 27)	118577.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	1.5	2.5	4.5	1.5	9.5	0.0
Merged-chr10-7817176-2	chr10	7816676	7817676	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026141, intron 12 of 12)	B1F1|SINE|Alu	-15294.0	NM_172785	237256.0	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53218263-4	chr4	53217760	53218760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27936.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-32085565-5	chr14	32084978	32085978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104305)	promoter-TSS (NR_104305)	-192.0	NR_104305	105638.0	Mm.2519	NM_172254	ENSMUSG00000021905	Dph3	DELGIP1|DelgipP1|Desr1|KTI11|Zcsl2	diphthamine biosynthesis 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3708243-4	chr19	3707748	3708748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358258)	promoter-TSS (NM_001358258)	-45.0	NM_001358256	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88491080-4	chr15	88490558	88491558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109244.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-33060349-4	chr6	33059836	33060836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025336)	promoter-TSS (NM_025336)	-76.0	NM_025336	66075.0	Mm.21501	NM_025336	ENSMUSG00000053768	Chchd3	0610041L09Rik|1700039J09Rik|AW558177	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-55817107-4	chr3	55816577	55817577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030595, intron 39 of 57)	intron (NM_030595, intron 39 of 57)	-30028.0	NR_033592	71182.0	Mm.195603	NR_033592	ENSMUSG00000106572	4933417G07Rik	-	SEC13 homolog pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117262904-4	chr8	117262396	117263396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	5877.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125389305-4	chr5	125388824	125389824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019639, intron 1 of 1)	CpG	693.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	25.5	52.5	60.5	18.5	42.0	43.0
Merged-chr19-43631071-4	chr19	43630557	43631557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10950.0	NR_152201	100043245.0	Mm.402688	NR_152201		Gm4311	-	predicted gene 4311	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127904114-4	chr7	127903627	127904627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009739)	promoter-TSS (NM_009739)	54.0	NM_009739	12041.0	Mm.425495	NM_009739	ENSMUSG00000030802	Bckdk	AI327402	branched chain ketoacid dehydrogenase kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20187875-4	chr13	20187360	20188360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 2 of 21)	intron (NM_080288, intron 2 of 21)	97353.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	9.0	7.5	13.0	22.5	15.0	8.0
Merged-chr4-152174144-2	chr4	152173644	152174644	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3956.0	NM_133348	70025.0	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-125127443-4	chr4	125126927	125127927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153159, intron 1 of 5)	intron (NM_153159, intron 1 of 5)	454.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105696211-4	chr5	105695730	105696730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3739.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	13.5	48.0	52.5	22.0	85.0	48.5
Merged-chr3-95954048-2	chr3	95953548	95954548	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	24791.0	NM_023210	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3251285-4	chr8	3250808	3251808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330056, intron 2 of 21)	intron (NM_001330056, intron 2 of 21)	28309.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-7894863-1	chr1	7894363	7895363	+	1000.0	f0_balb.idr	Intergenic	RMER19B2|LTR|ERVK	805943.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.5	1.5	2.0	8.0	2.0	0.0
Merged-chr14-50870489-4	chr14	50869983	50870983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009351)	promoter-TSS (NM_009351)	71.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	15.0	33.0	17.0	6.0	35.0	20.0
Merged-chr1-13652351-4	chr1	13651923	13652923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145381, intron 1 of 6)	intron (NM_145381, intron 1 of 6)	8086.0	NM_145381	212442.0	Mm.89572	NM_145381	ENSMUSG00000025937	Lactb2	Cgi-83|E430032H21Rik	lactamase, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121803805-2	chr11	121803305	121804305	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26413.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91736423-4	chr12	91735930	91736930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 3 of 6)	intron (NM_175367, intron 3 of 6)	50006.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-77239687-2	chr12	77239187	77240187	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045554, intron 1 of 11)	intron (NR_045554, intron 1 of 11)	948.0	NR_045554	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17560159-4	chr10	17559695	17560695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-163033.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	2.5	6.0	4.0	12.5	11.5	4.5
Merged-chr9-77750754-4	chr9	77750269	77751269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3766.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	34.5	94.5	47.5	45.5	61.0	83.0
Merged-chr10-127311759-4	chr10	127311273	127312273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001171582)	promoter-TSS (NM_001171582)	13.0	NM_001003913	216443.0	Mm.28173	NM_001003913	ENSMUSG00000040354	Mars	Metrs|Mtrns	methionine-tRNA synthetase	protein-coding	23.5	80.0	75.5	33.5	88.0	70.0
Merged-chr18-68160048-4	chr18	68159518	68160518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	Tigger6a|DNA|TcMar-Tigger	-67928.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-23009284-2	chr2	23008784	23009784	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	intron (NM_001077190, intron 1 of 10)	30957.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41331001-1	chr19	41330501	41331501	+	1000.0	f1_c57bl6.idr	intron (NM_031376, intron 3 of 16)	intron (NM_031376, intron 3 of 16)	54069.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	27.0	60.0	48.5	37.5	61.5	37.0
Merged-chr5-115134933-4	chr5	115134424	115135424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175352)	promoter-TSS (NM_175352)	51.0	NM_175352	106840.0	Mm.29241	NM_175352	ENSMUSG00000046562	Unc119b	AA407659|AI414892	unc-119 lipid binding chaperone B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5860623-4	chr2	5860120	5861120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016918, intron 3 of 9)	intron (NM_016918, intron 3 of 9)	2314.0	NR_152181	791411.0	Mm.442531	NR_152181		Gm13199	-	predicted gene 13199	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71275490-4	chr2	71274942	71275942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 17 of 17)	intron (NM_172436, intron 17 of 17)	63496.0	NM_010064	13427.0	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81835618-4	chr7	81835115	81836115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6184.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	7.5	11.0	7.5	1.5	5.5	9.5
Merged-chr19-16140804-4	chr19	16140301	16141301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	7970.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76217299-4	chr14	76216791	76217791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34171.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139235035-4	chr7	139234525	139235525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027164, intron 8 of 10)	intron (NM_027164, intron 8 of 10)	-13457.0	NM_001033206	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	16.0	57.5	21.5	27.0	15.5	50.5
Merged-chr13-12650365-4	chr13	12649852	12650852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003568)	promoter-TSS (NR_003568)	43.0	NR_003568	664862.0	Mm.415635	NR_003568		Gpr137b-ps	2310041G17Rik	G protein-coupled receptor 137B, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56303250-4	chr17	56302726	56303726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010931)	promoter-TSS (NM_010931)	-111.0	NM_010931	18140.0	Mm.42196	NM_010931	ENSMUSG00000001228	Uhrf1	AL022808|ICBP90|Np95|RNF106	ubiquitin-like, containing PHD and RING finger domains, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-8690563-4	chr8	8690075	8691075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176849)	promoter-TSS (NM_176849)	-38.0	NM_176849	234023.0	Mm.251655	NM_176849	ENSMUSG00000040459	Arglu1	9430010O03Rik|C130008N12	arginine and glutamate rich 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165460578-4	chr1	165460082	165461082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027430)	promoter-TSS (NM_027430)	-119.0	NM_028759	74106.0	Mm.227605	NM_028759	ENSMUSG00000026571	Dcaf6	1200006M05Rik|Iqwd1|PC326	DDB1 and CUL4 associated factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-67779673-4	chr13	67779175	67780175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028402)	promoter-TSS (NM_028402)	-18.0	NM_028402	72958.0	Mm.53849	NM_028402	ENSMUSG00000090659	Zfp493	2900054J07Rik|Rslcan12	zinc finger protein 493	protein-coding	33.0	86.5	79.5	18.5	25.0	66.0
Merged-chr16-42875627-4	chr16	42875129	42876129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040521)	promoter-TSS (NR_040521)	-42.0	NR_040521	75722.0	Mm.243747	NR_040521	ENSMUSG00000075070	4932412D23Rik	Gm10809	RIKEN cDNA 4932412D23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-105506520-4	chr11	105506012	105507012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49777.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80480495-4	chr17	80480017	80481017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009231)	promoter-TSS (NM_009231)	-64.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16406971-2	chr19	16406471	16407471	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11C_MM|LTR|ERVK	-28696.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171845137-4	chr1	171844613	171845613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289470, intron 2 of 8)	intron (NM_001289470, intron 2 of 8)	5416.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	81.0	143.5	114.5	71.5	120.0	89.0
Merged-chr10-67099433-2	chr10	67098933	67099933	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2445.0	NM_178606	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108306842-4	chr9	108306367	108307367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313961)	promoter-TSS (NM_001313961)	70.0	NM_001313962	11848.0	Mm.757	NM_016802	ENSMUSG00000007815	Rhoa	Arha|Arha1|Arha2	ras homolog family member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56721998-4	chr19	56721512	56722512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007419)	promoter-TSS (NM_007419)	-360.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59589583-4	chr10	59589070	59590070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033259, intron 1 of 7)	intron (NM_001033259, intron 1 of 7)	27122.0	NM_001033259	215999.0	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4058428-2	chr19	4057928	4058928	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144869, intron 4 of 6)	intron (NM_144869, intron 4 of 6)	1019.0	NM_144869	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86755321-2	chr17	86754813	86755813	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010137, intron 1 of 15)	CpG	1449.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	2.5	0.0	0.5	2.0	0.0	4.0
Merged-chr11-48866713-2	chr11	48866213	48867213	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008326, exon 3 of 3)	exon (NM_008326, exon 3 of 3)	4707.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86400234-4	chr6	86399734	86400734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER67A|LTR|ERV1	-3084.0	NM_025823	66881.0	Mm.30849	NM_025823	ENSMUSG00000029998	Pcyox1	1200015P13Rik|AI115532|AI448340|PCL1|Pcly	prenylcysteine oxidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24643031-4	chr10	24642521	24643521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308329, intron 24 of 24)	intron (NM_001308329, intron 24 of 24)	47579.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	8.5	37.0	8.5	3.0	18.0	9.5
Merged-chr5-114855404-4	chr5	114854902	114855902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026263, intron 1 of 11)	intron (NM_026263, intron 1 of 11)	1688.0	NM_026263	67593.0	Mm.251409	NM_026263	ENSMUSG00000029564	4930519G04Rik	1700014B12Rik	RIKEN cDNA 4930519G04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26962636-2	chr8	26962136	26963136	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14700.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-133709097-4	chr7	133708604	133709604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025392)	promoter-TSS (NM_025392)	191.0	NM_009479	22276.0	Mm.3160	NM_009479	ENSMUSG00000030979	Uros	AI415298|UROIIIS|Uros3	uroporphyrinogen III synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135758968-4	chr7	135758451	135759451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42572.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	1.0	5.5	18.5	15.0	5.0	9.5
Merged-chr2-18821815-4	chr2	18821286	18822286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19968.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139407869-2	chr5	139407369	139408369	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177000, intron 1 of 1)	intron (NM_177000, intron 1 of 1)	1482.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167753456-2	chr2	167752956	167753956	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62279.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-75478685-4	chr1	75478179	75479179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177056)	promoter-TSS (NM_177056)	792.0	NM_001001566	74241.0	Mm.260577	NM_001001565	ENSMUSG00000032997	Chpf	1700028N03Rik|AI414328|D1Bwg1363e	chondroitin polymerizing factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110176475-4	chr5	110176000	110177000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008146)	promoter-TSS (NM_008146)	4.0	NR_040431	100504007.0	Mm.441495	NR_040430	ENSMUSG00000086247	Gm15787	-	predicted gene 15787	ncRNA	78.5	136.0	149.0	87.5	188.5	148.0
Merged-chr5-21564150-4	chr5	21563671	21564671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028977, intron 2 of 3)	intron (NM_028977, intron 2 of 3)	20644.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79744308-4	chr12	79743833	79744833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 8 of 10)	intron (NM_009014, intron 8 of 10)	180400.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86526228-4	chr6	86525734	86526734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011865)	promoter-TSS (NM_011865)	-45.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	9.5	38.5	37.0	9.0	37.0	37.5
Merged-chr11-86671234-4	chr11	86670734	86671734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356531)	promoter-TSS (NM_001356531)	41.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108569873-4	chr9	108569375	108570375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026378)	promoter-TSS (NM_026378)	-17.0	NM_026378	67789.0	Mm.458081	NM_026378	ENSMUSG00000019039	Dalrd3	6330580J24Rik|C77829|mir-425	DALR anticodon binding domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80385379-2	chr11	80384880	80385880	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045038, intron 1 of 16)	B1_Mus1|SINE|Alu	2101.0	NM_001130171	22680.0	Mm.401332	NM_011751	ENSMUSG00000017421	Zfp207	8430401D15Rik|BuGZ|Zep|Znf207	zinc finger protein 207	protein-coding	10.0	0.0	4.5	1.0	0.0	2.0
Merged-chr11-115642119-2	chr11	115641619	115642619	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13824.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65586462-4	chr3	65585942	65586942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57028.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	4.5	19.0	11.0	5.0	2.5	12.5
Merged-chr15-96709863-4	chr15	96709361	96710361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-10133.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31669998-4	chr14	31669508	31670508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28951.0	NM_025295	26363.0	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-144319596-4	chr1	144319120	144320120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70516.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85366605-4	chr12	85366101	85367101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 1 of 4)	intron (NM_026775, intron 1 of 4)	8116.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-109074153-4	chr9	109073656	109074656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172774)	promoter-TSS (NM_172774)	-32.0	NM_172774	235610.0	Mm.100622	NM_172774	ENSMUSG00000025646	Atrip	6620401K05Rik	ATR interacting protein	protein-coding	29.5	66.5	83.0	31.5	107.5	55.0
Merged-chr5-3420627-4	chr5	3420129	3421129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 3 of 7)	intron (NM_009873, intron 3 of 7)	76736.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83647784-4	chr7	83647279	83648279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 16 of 18)	intron (NM_001360088, intron 16 of 18)	7716.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	11.5	50.0	26.5	6.0	21.0	19.0
Merged-chr5-124019450-4	chr5	124018944	124019944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	12816.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	15.0	30.5	20.0	12.5	55.0	39.5
Merged-chr12-111449479-4	chr12	111448993	111449993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009396, intron 7 of 11)	intron (NM_009396, intron 7 of 11)	6832.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50888612-4	chr15	50888104	50889104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_035444)	TTS (NR_035444)	445.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131186862-4	chr2	131186379	131187379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023117)	promoter-TSS (NM_023117)	-69.0	NM_023117	12531.0	Mm.38444	NM_023117	ENSMUSG00000027330	Cdc25b	AI604853	cell division cycle 25B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89772791-4	chr3	89772302	89773302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027315)	promoter-TSS (NM_027315)	598.0	NR_130957	74034.0	Mm.386816	NR_130957	ENSMUSG00000042579	4632404H12Rik	-	RIKEN cDNA 4632404H12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-31634261-4	chr18	31633739	31634739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357554)	promoter-TSS (NM_001357554)	-129.0	NM_001357554	269003.0	Mm.194538	NM_172965	ENSMUSG00000024260	Sap130	2610304F09Rik|6720406D06	Sin3A associated protein	protein-coding	19.0	48.5	33.0	22.0	64.0	61.0
Merged-chr15-77800707-4	chr15	77800204	77801204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 3 of 40)	intron (NM_022410, intron 3 of 40)	41471.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136310914-4	chr4	136310389	136311389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028871)	promoter-TSS (NM_028871)	-53.0	NM_001277122	74326.0	Mm.31051	NM_028871	ENSMUSG00000066037	Hnrnpr	2610003J05Rik|2610528B01Rik|Hnrpr	heterogeneous nuclear ribonucleoprotein R	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37203961-4	chr10	37203463	37204463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65037.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-122310895-4	chr9	122310405	122311405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-16482.0	NM_133979	102566.0	Mm.87676	NM_133979	ENSMUSG00000037949	Ano10	AI604832|Tmem16k	anoctamin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-21183019-4	chr2	21182515	21183515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027728, intron 4 of 4)	intron (NM_027728, intron 4 of 4)	22350.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-52424090-4	chr5	52423722	52424722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256059, intron 3 of 11)	intron (NM_001256059, intron 3 of 11)	-16937.0	NR_152197	100041805.0	Mm.417070	NR_152197		Gm3519	Gm43683	predicted gene 3519	ncRNA	1.5	0.0	6.0	1.0	1.5	6.5
Merged-chr12-3891506-4	chr12	3891022	3892022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153743)	promoter-TSS (NM_153743)	-222.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-153877222-4	chr4	153876711	153877711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	73265.0	NR_040670	407793.0	Mm.260950	NR_040670		BC039966	-	cDNA sequence BC039966	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-143170248-2	chr6	143169748	143170748	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029250, intron 1 of 7)	intron (NM_029250, intron 1 of 7)	3018.0	NM_029250	75320.0	Mm.272548	NM_029250	ENSMUSG00000030275	Etnk1	1110061E11Rik|4930555L11Rik|AI195356|AI841245|C80956|D6Ertd3e|EKI1	ethanolamine kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-96388252-4	chr13	96387780	96388780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026173)	promoter-TSS (NM_026173)	-14.0	NM_026173	67463.0	Mm.86472	NM_026173	ENSMUSG00000021671	Poc5	1200014M14Rik|AV144706	POC5 centriolar protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173528748-4	chr2	173528246	173529246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028158)	TTS (NM_028158)	6154.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	16.5	18.5	24.5	23.0	33.5	31.0
Merged-chr8-69974416-4	chr8	69973901	69974901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113346)	promoter-TSS (NM_001113346)	-18.0	NM_001113346	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	0.0	9.5	11.5	5.0	17.5	11.0
Merged-chr1-152787032-6	chr1	152786513	152787513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-13140.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-6104679-4	chr18	6104174	6105174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039692, intron 3 of 18)	L1MDa|LINE|L1	31424.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	3.0	7.5	8.5	2.0	17.0	7.5
Merged-chr11-69399514-2	chr11	69399014	69400014	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001017426, exon 23 of 23)	3' UTR (NM_001017426, exon 23 of 23)	-1280.0	NM_025915	67020.0	Mm.390406	NM_025915	ENSMUSG00000045377	Tmem88	2600017H02Rik	transmembrane protein 88	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85108828-4	chr12	85108335	85109335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1998.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82826326-4	chr18	82825818	82826818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29579.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13474437-4	chr10	13473945	13474945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195065)	promoter-TSS (NM_001195065)	-49.0	NM_001195065	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23905135-2	chr18	23904635	23905635	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-49553.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136609032-4	chr1	136608533	136609533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15868.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155483822-4	chr1	155483336	155484336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	43275.0	NR_132128	433367.0	Mm.359304	NR_132128	ENSMUSG00000073535	Gm5532	EG433367	predicted gene 5532	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-174439654-4	chr2	174439144	174440144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022325)	promoter-TSS (NM_022325)	-605.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127650257-4	chr10	127649761	127650761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009284, intron 4 of 21)	MERVL_2A-int|LTR|ERVL	7275.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	13.0	21.0	32.5	11.5	23.0	12.5
Merged-chr17-26562026-2	chr17	26561526	26562526	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	514.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	6.5	3.5	4.5	0.0	2.0	8.0
Merged-chr11-115476457-2	chr11	115475957	115476957	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177778, intron 2 of 2)	intron (NM_177778, intron 2 of 2)	790.0	NM_001361594	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-37312071-2	chr3	37311571	37312571	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001255992)	promoter-TSS (NM_001255992)	375.0	NM_145825	207175.0	Mm.344708	NM_145825	ENSMUSG00000045031	Cetn4	-	centrin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117159604-4	chr5	117159083	117160083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	ID_B1|SINE|B4	25995.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	151.0	255.5	220.0	74.0	231.5	205.5
Merged-chr1-4785698-4	chr1	4785197	4786197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033530)	promoter-TSS (NR_033530)	29.0	NM_001177658	27395.0	Mm.182927	NM_025300	ENSMUSG00000033845	Mrpl15	HSPC145|MRP-L7|Rpml7	mitochondrial ribosomal protein L15	protein-coding	15.0	45.5	18.5	12.5	45.0	26.5
Merged-chr11-87423031-4	chr11	87422518	87423518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031386, intron 1 of 30)	U1|snRNA|snRNA	-4573.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94298629-4	chr13	94298104	94299104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER77B|LTR|ERVL	-12773.0	NM_001346609	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3645105-4	chr7	3644597	3645597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146176)	promoter-TSS (NM_146176)	-172.0	NM_146176	232791.0	Mm.358731	NM_146176	ENSMUSG00000035632	Cnot3	A930039N10Rik	CCR4-NOT transcription complex, subunit 3	protein-coding	13.5	20.0	23.5	9.5	47.5	19.5
Merged-chr14-56668210-4	chr14	56667724	56668724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023773)	promoter-TSS (NM_023773)	-24.0	NR_153396	75339.0	Mm.152466	NM_023773	ENSMUSG00000079184	Mphosph8	1500035L22Rik|4930548G07Rik|AU040635	M-phase phosphoprotein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-63506091-1	chr15	63505591	63506591	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-26483.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8535649-4	chr10	8535160	8536160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16835.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160068972-4	chr2	160068474	160069474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52321.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	49.5	48.0	25.0	45.5	60.5	25.0
Merged-chr10-71349445-4	chr10	71348905	71349905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027184, intron 1 of 5)	intron (NM_027184, intron 1 of 5)	1642.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165055190-4	chr2	165054691	165055691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170704)	promoter-TSS (NM_170704)	-445.0	NM_170704	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76303167-2	chr15	76302667	76303667	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153122, intron 12 of 26)	intron (NM_153122, intron 12 of 26)	4078.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34995485-4	chr6	34994979	34995979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR52|LTR|ERVL	-17480.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94979128-4	chr11	94978638	94979638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2811.0	NM_009161	20391.0	Mm.18709	NM_009161	ENSMUSG00000001508	Sgca	50DAG|Asg	sarcoglycan, alpha (dystrophin-associated glycoprotein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12769682-4	chr17	12769134	12770134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010515)	promoter-TSS (NM_010515)	72.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90285722-2	chr16	90285222	90286222	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1219.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84440735-4	chr10	84440256	84441256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004363)	promoter-TSS (NM_001004363)	-285.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121703369-4	chr11	121702884	121703884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144797, intron 1 of 3)	CpG	957.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85980182-4	chr12	85979676	85980676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	98865.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125329384-4	chr5	125328889	125329889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	11705.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5714382-4	chr13	5713879	5714879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143713.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32608275-4	chr17	32607759	32608759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13060.0	NM_001100187	677156.0	Mm.484117	NM_001100187	ENSMUSG00000062464	Cyp4f37	Gm9705	cytochrome P450, family 4, subfamily f, polypeptide 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120882330-4	chr4	120881829	120882829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182929, intron 3 of 7)	intron (NM_182929, intron 3 of 7)	27530.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84192192-4	chr15	84191695	84192695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178614)	promoter-TSS (NM_178614)	-38.0	NM_178614	68653.0	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71309445-3	chr8	71308877	71309877	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	36663.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	49.5	42.0	65.5	39.0	47.5	83.0
Merged-chr3-51340521-8	chr3	51340042	51341042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001291059, exon 1 of 10)	5' UTR (NM_001291059, exon 1 of 10)	102.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123671196-4	chr5	123670701	123671701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359224, intron 1 of 18)	intron (NM_001359224, intron 1 of 18)	13160.0	NM_019765	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	25.0	26.0	42.5	26.5	40.5	40.5
Merged-chr11-58323368-4	chr11	58322925	58323925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028331)	promoter-TSS (NR_028331)	-60.0	NR_028331	319475.0	Mm.72124	NM_178761	ENSMUSG00000049755	Zfp672	4930488P06Rik|4930511N19Rik|Znf672	zinc finger protein 672	protein-coding	86.0	163.5	137.5	72.0	184.0	127.0
Merged-chr1-171330288-2	chr1	171329750	171330750	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357553, intron 1 of 4)	intron (NM_001357553, intron 1 of 4)	681.0	NM_001357553	21945.0	Mm.270139	NM_011615	ENSMUSG00000013973	Dedd	CASP8IP1|DEFT|Dedpro1|FLDED1|KE05	death effector domain-containing	protein-coding	6.0	21.5	17.0	20.0	20.0	17.0
Merged-chr9-123928246-4	chr9	123927771	123928771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40421.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36987321-4	chr1	36986810	36987810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M7|LINE|L1	-47783.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139388439-2	chr7	139387969	139388969	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001127363)	promoter-TSS (NM_001127363)	-640.0	NM_183144	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127636823-4	chr10	127636307	127637307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6179.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	1.5	4.0	2.0	3.0	0.5	3.0
Merged-chr12-102704803-2	chr12	102704303	102705303	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172584)	promoter-TSS (NM_172584)	66.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61728244-4	chr11	61727725	61728725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7426.0	NM_001033227	109342.0	Mm.441070	NM_001033227	ENSMUSG00000042371	Slc5a10	C330021F16Rik|SGLT5	solute carrier family 5 (sodium/glucose cotransporter), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36596256-4	chr1	36595742	36596742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 10 of 14)	intron (NM_001126046, intron 10 of 14)	-2910.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40784194-4	chr9	40783717	40784717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133733)	TTS (NM_133733)	-17056.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	10.0	9.5	8.5	7.0	5.0	3.0
Merged-chr12-85391277-4	chr12	85390779	85391779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-16562.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-41240096-3	chr8	41239599	41240599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_023662, intron 1 of 37)	CpG	340.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	135.0	296.5	208.5	79.0	157.0	129.5
Merged-chr15-99030782-4	chr15	99030275	99031275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009448, intron 1 of 3)	intron (NM_009448, intron 1 of 3)	884.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4_GL456216_random-16096-1	chr4_GL456216_random	15596	16596	+	1000.0	f0_c57.idr	5' UTR (NM_001033326, exon 1 of 7)	5' UTR (NM_001033326, exon 1 of 7)	215.0	NM_001033326	236082.0	Mm.305345	NM_001033326	ENSMUSG00000063897	Dhrsx	C80877|D4Ertd296e|Dhrsxy|Pscad	dehydrogenase/reductase (SDR family) X chromosome	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6782791-4	chr17	6782284	6783284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009510)	promoter-TSS (NM_009510)	-4.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	36.5	116.0	112.5	30.5	119.0	102.5
Merged-chr8-23028775-1	chr8	23028275	23029275	+	1000.0	f0_c57.idr	intron (NM_001110783, intron 1 of 43)	intron (NM_001110783, intron 1 of 43)	-6324.0	NM_001277281	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	6.5	4.0	3.5	3.0	3.5	3.0
Merged-chr7-128524223-4	chr7	128523681	128524681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013863, intron 1 of 3)	CpG	598.0	NM_013863	29810.0	Mm.84073	NM_013863	ENSMUSG00000030847	Bag3	AA407278|Bis|mg638	BCL2-associated athanogene 3	protein-coding	35.0	54.5	25.0	11.0	46.5	34.5
Merged-chr10-35944333-2	chr10	35943833	35944833	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-562474.0	NM_001253355	319415.0	Mm.332442	NM_001081208	ENSMUSG00000044499	Hs3st5	D930005L05Rik|Gm1151|Hs3ost5	heparan sulfate (glucosamine) 3-O-sulfotransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-35941125-4	chr13	35940635	35941635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26771.0	NM_029628	76487.0	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	14.0	25.0	27.0	10.5	39.0	19.5
Merged-chr8-26966674-4	chr8	26966149	26967149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10687.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-53995388-4	chr5	53994859	53995859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3164.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0.5	4.0	1.5	0.5	4.0	1.0
Merged-chr5-9104134-4	chr5	9103640	9104640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081029, intron 2 of 4)	intron (NM_001081029, intron 2 of 4)	3403.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8501941-7	chr12	8501469	8502469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1960.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	48.0	155.5	100.5	62.5	117.5	94.0
Merged-chr19-46524846-4	chr19	46524358	46525358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23210.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95571683-4	chr9	95571166	95572166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	11849.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-33247842-4	chr14	33247305	33248305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	30982.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-36214240-4	chr2	36213732	36214732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16194.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184851908-4	chr1	184851358	184852358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6011.0	NM_133684	67247.0	Mm.177724	NM_133684	ENSMUSG00000073481	Marc2	2810484M10Rik|Mosc2|mARC1	mitochondrial amidoxime reducing component 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104863855-4	chr3	104863337	104864337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253702)	promoter-TSS (NM_001253702)	668.0	NM_009797	12340.0	Mm.19142	NM_009797	ENSMUSG00000070372	Capza1	CAPZ|CAZ1|Cappa1|capZ alpha-1	capping protein (actin filament) muscle Z-line, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6921972-4	chr19	6921469	6922469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007953)	promoter-TSS (NM_007953)	-161.0	NM_007953	26379.0	Mm.386776	NM_007953	ENSMUSG00000024955	Esrra	ERRalpha|Err1|Estrra|Nr3b1	estrogen related receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33817742-4	chr17	33817243	33818243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030697, exon 3 of 11)	exon (NM_030697, exon 3 of 11)	6819.0	NM_016844	54127.0	Mm.352374	NM_016844	ENSMUSG00000067288	Rps28	-	ribosomal protein S28	protein-coding	33.5	101.0	73.5	18.0	116.0	66.0
Merged-chr1-173412121-4	chr1	173411639	173412639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-8465.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	69.0	179.0	145.5	93.5	217.0	174.0
Merged-chr7-35750953-5	chr7	35750383	35751383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178704, intron 2 of 18)	intron (NM_178704, intron 2 of 18)	3571.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	30.0	25.5	26.0	34.5	36.5	36.5
Merged-chr4-43965166-4	chr4	43964664	43965664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027450, intron 1 of 4)	intron (NM_027450, intron 1 of 4)	7462.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4743420-4	chr16	4742913	4743913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010443, intron 1 of 5)	IAPLTR1a_Mm|LTR|ERVK	1800.0	NM_010443	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43538743-4	chr7	43538248	43539248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5577.0	NM_021293	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154604386-2	chr2	154603886	154604886	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021534)	promoter-TSS (NM_021534)	-713.0	NM_021534	59038.0	Mm.24673	NM_021534	ENSMUSG00000000876	Pxmp4	3010018P03Rik|Pmp24	peroxisomal membrane protein 4	protein-coding	38.0	70.0	52.5	93.5	183.0	88.5
Merged-chr16-16526888-4	chr16	16526414	16527414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	497.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-63045992-4	chr11	63045500	63046500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15659.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27228242-4	chr3	27227739	27228739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 3 of 4)	intron (NM_178772, intron 3 of 4)	45235.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31512268-4	chr17	31511740	31512740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021322, exon 1 of 11)	exon (NM_021322, exon 1 of 11)	247.0	NM_021322	57773.0	Mm.143771	NM_021322	ENSMUSG00000024037	Wdr4	AI415180|AI448349|D530049K22Rik|Wh	WD repeat domain 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29522962-4	chr19	29522444	29523444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015567)	promoter-TSS (NR_015567)	662.0	NM_001081319	226089.0	Mm.353838	NM_177641	ENSMUSG00000038658	Ric1	C030046E11Rik|C130057E09Rik|Kiaa1432	RAB6A GEF complex partner 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-76184449-4	chr5	76183934	76184934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011626, intron 1 of 5)	CpG	554.0	NM_011626	21982.0	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53229341-4	chr18	53228839	53229839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16323.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	1.0	19.0	7.5	4.0	1.0	1.0
Merged-chr17-35907824-2	chr17	35907324	35908324	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347378, intron 6 of 11)	B2_Mm2|SINE|B2	2244.0	NM_001142745	73242.0	Mm.273155	NM_028476	ENSMUSG00000024426	Atat1	0610011P08Rik|2610008K08Rik|2610110G12Rik|3110080J08Rik|Mec17|TAT	alpha tubulin acetyltransferase 1	protein-coding	0.0	1.0	0.0	2.5	0.0	0.5
Merged-chr8-70824172-1	chr8	70823672	70824672	+	1000.0	f1_balb.idr	Intergenic	L1MB5|LINE|L1	15548.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59720433-2	chr15	59719933	59720933	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71779.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119089815-2	chr11	119089315	119090315	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3578.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110475164-3	chr11	110474663	110475663	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	-3352.0	NM_001356347	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	5.5	5.5	3.5	1.5	2.5	4.0
Merged-chr5-121842864-4	chr5	121842363	121843363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6004.0	NM_008507	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	32.0	33.5	35.5	30.0	32.5	38.0
Merged-chr7-7295739-4	chr7	7295237	7296237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357104, intron 1 of 9)	intron (NM_001357104, intron 1 of 9)	3099.0	NM_001302386	12727.0	Mm.297883	NM_011334	ENSMUSG00000000605	Clcn4	Clc4-2|Clcn4-2|clC-4	chloride channel, voltage-sensitive 4	protein-coding	0.0	0.0	3.0	3.5	0.0	1.5
Merged-chr15-4026579-4	chr15	4026088	4027088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028266, exon 1 of 2)	non-coding (NR_028266, exon 1 of 2)	160.0	NM_024188	67041.0	Mm.13445	NM_024188	ENSMUSG00000022186	Oxct1	2610008O03Rik|Oxct|Oxct2a|Scot-s	3-oxoacid CoA transferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127091290-3	chr7	127090801	127091801	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178901)	promoter-TSS (NM_178901)	-135.0	NM_178901	101602.0	Mm.490357	NM_178901	ENSMUSG00000045165	AI467606	-	expressed sequence AI467606	protein-coding	4.0	2.0	5.0	4.0	2.0	5.0
Merged-chr16-59583753-4	chr16	59583249	59584249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-27997.0	NM_174848	224273.0	Mm.246424	NM_174848	ENSMUSG00000022723	Crybg3	5031404N19|AU022790|Gm9581	beta-gamma crystallin domain containing 3	protein-coding	2.0	11.0	21.0	6.0	5.0	2.0
Merged-chr4-59465651-4	chr4	59465137	59466137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27004.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36673374-4	chr16	36672872	36673872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7295.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103216752-2	chr11	103216252	103217252	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177801, intron 1 of 4)	intron (NM_177801, intron 1 of 4)	1680.0	NM_177801	328019.0	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120731545-4	chr2	120731067	120732067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026891)	promoter-TSS (NM_026891)	-50.0	NM_026891	68968.0	Mm.2289	NM_026891	ENSMUSG00000027284	Cdan1	1500015A01Rik|AI448026|AW492297|CDA-I|CDA1|CDAI	congenital dyserythropoietic anemia, type I (human)	protein-coding	11.5	24.5	33.5	4.5	28.5	30.0
Merged-chr1-87624459-2	chr1	87623959	87624959	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	4147.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-74778966-7	chr18	74778480	74779480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028560)	promoter-TSS (NR_028560)	-232.0	NM_177470	52538.0	Mm.245724	NM_177470	ENSMUSG00000036880	Acaa2	0610011L04Rik|AI255831|AI265397|D18Ertd240e	acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	protein-coding	10.5	25.0	18.5	6.5	14.0	31.5
Merged-chr17-33909364-4	chr17	33908889	33909889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045146)	promoter-TSS (NR_045146)	-56.0	NR_149750	13163.0	Mm.271809	NM_007829	ENSMUSG00000002307	Daxx	-	Fas death domain-associated protein	protein-coding	34.0	49.0	30.5	8.0	57.0	31.0
Merged-chr12-17715873-4	chr12	17715352	17716352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	25043.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	58.5	184.5	123.0	71.0	123.0	121.5
Merged-chr4-40268565-4	chr4	40268070	40269070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134097, intron 1 of 2)	CpG-9801	-1009.0	NM_001349093	100504309.0	Mm.392019	NM_001349093		Smim27	2010003O02Rik|Toporsos	small integral membrane protein 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17611828-4	chr6	17611317	17612317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A|LTR|ERVL	-25193.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	13.5	40.5	22.0	14.5	38.5	22.5
Merged-chr7-81199958-4	chr7	81199454	81200454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13850.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90882376-4	chr5	90881875	90882875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8870.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	44.5	70.0	42.0	37.0	74.5	67.0
Merged-chr14-33857171-4	chr14	33856637	33857637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-45854.0	NR_131113	218902.0	Mm.107791	NR_131113	ENSMUSG00000115751	4930503F20Rik	4930453C15	RIKEN cDNA 4930503F20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69987163-4	chr12	69986656	69987656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022028)	promoter-TSS (NM_022028)	-154.0	NM_022028	64010.0	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	1.5	0.0	0.5	1.5	0.0	0.5
Merged-chr10-86778786-7	chr10	86778285	86779285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175331)	promoter-TSS (NM_175331)	-220.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113548139-4	chr13	113547628	113548628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45284.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25776925-4	chr7	25776447	25777447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 6 of 19)	intron (NM_009465, intron 6 of 19)	11786.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-37956365-4	chr18	37955792	37956792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153793, intron 1 of 7)	intron (NM_153793, intron 1 of 7)	733.0	NM_153793	225392.0	Mm.233516	NM_153793	ENSMUSG00000044024	Rell2	4631403P03Rik|ependolin	RELT-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105567106-4	chr5	105566593	105567593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	47622.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79741386-4	chr15	79740888	79741888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194342, intron 1 of 16)	intron (NM_194342, intron 1 of 16)	1148.0	NM_194342	223697.0	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	0.0	2.5	0.0	0.5	0.0	3.5
Merged-chr12-40555246-4	chr12	40554758	40555758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	109205.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114883430-2	chr11	114882930	114883930	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6611.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	1.5	12.5	7.5	1.0	6.0	2.5
Merged-chr14-9389427-4	chr14	9388934	9389934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-494661.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129309216-4	chr2	129308711	129309711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010554, intron 1 of 6)	intron (NM_010554, intron 1 of 6)	761.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	42.0	82.0	53.5	35.5	50.0	76.0
Merged-chr7-98308901-2	chr7	98308401	98309401	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360615, intron 1 of 10)	intron (NM_001360615, intron 1 of 10)	641.0	NM_001360616	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-116976549-2	chr2	116976049	116977049	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76397.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35917779-7	chr17	35917216	35918216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035445)	promoter-TSS (NR_035445)	-173.0	NR_035445	100316810.0		NR_035445	ENSMUSG00000084751	Mir1894	Mirn1894|mmu-mir-1894	microRNA 1894	ncRNA	81.0	183.0	125.0	78.0	188.5	126.5
Merged-chr2-150789539-1	chr2	150789039	150790039	+	1000.0	f0_balb.idr	intron (NM_153781, intron 1 of 19)	intron (NM_153781, intron 1 of 19)	2743.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17374179-4	chr17	17373661	17374661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025934)	promoter-TSS (NM_025934)	-171.0	NM_025934	67045.0	Mm.35117	NM_025934	ENSMUSG00000023852	Riok2	2010110K24Rik|2410085M17Rik	RIO kinase 2	protein-coding	130.0	241.0	237.5	211.5	390.0	370.0
Merged-chr13-21934111-2	chr13	21933611	21934611	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10983.0	NM_183014	193452.0	Mm.187446	NM_183014	ENSMUSG00000006720	Zfp184	4930500C15Rik	zinc finger protein 184 (Kruppel-like)	protein-coding	0.0	4.0	0.5	1.0	0.0	0.5
Merged-chr11-94161442-4	chr11	94160952	94161952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50002.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	40.0	45.0	58.5	31.0	59.5	71.5
Merged-chr16-21652868-4	chr16	21652401	21653401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001001881, exon 2 of 2)	3' UTR (NM_001001881, exon 2 of 2)	41764.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135494610-4	chr4	135494091	135495091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028995)	promoter-TSS (NM_028995)	-13.0	NM_028995	74552.0	Mm.26548	NM_028995	ENSMUSG00000028803	Nipal3	9130020G22Rik|AI480660|Npal3	NIPA-like domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80947747-4	chr7	80947230	80948230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019951)	promoter-TSS (NM_019951)	-180.0	NM_019951	56529.0	Mm.43760	NM_019951	ENSMUSG00000025724	Sec11a	1810012E07Rik|18kDa|Sec11l1|Sid2895p|Spc18|sid2895	SEC11 homolog A, signal peptidase complex subunit	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr18-44828521-4	chr18	44828024	44829024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163013)	promoter-TSS (NM_001163013)	-141.0	NM_001163013	240255.0	Mm.244482	NM_001163013	ENSMUSG00000034653	Ythdc2	3010002F02Rik|BC037178	YTH domain containing 2	protein-coding	108.5	230.5	142.0	90.5	143.0	133.0
Merged-chr13-55417536-2	chr13	55417036	55418036	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_021489)	TTS (NM_021489)	-2304.0	NM_029303	75477.0	Mm.432537	NM_029303	ENSMUSG00000044444	Pfn3	1700012P12Rik	profilin 3	protein-coding	0.0	2.0	3.0	0.5	2.5	5.0
Merged-chr6-122561651-2	chr6	122561151	122562151	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009645, intron 3 of 4)	intron (NM_009645, intron 3 of 4)	7842.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	2.5	5.5	3.0	2.5	5.5	3.0
Merged-chr2-166448931-4	chr2	166448406	166449406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015558, intron 1 of 2)	intron (NR_015558, intron 1 of 2)	1455.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-83572151-4	chr13	83571644	83572644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347566, intron 1 of 10)	intron (NM_001347566, intron 1 of 10)	-1463.0	NM_001347577	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	3.5	13.5	0.0	4.0	5.5	6.5
Merged-chr11-109361773-8	chr11	109361281	109362281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038097, intron 1 of 1)	intron (NR_038097, intron 1 of 1)	-1013.0	NM_010303	14674.0	Mm.193925	NM_010303	ENSMUSG00000020611	Gna13	AU024132|AU043124|Galpha13	guanine nucleotide binding protein, alpha 13	protein-coding	183.5	369.5	302.0	161.0	381.0	256.0
Merged-chr14-73049130-4	chr14	73048625	73049625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133720)	promoter-TSS (NM_133720)	-11.0	NM_001162412	70086.0	Mm.158324	NM_133720	ENSMUSG00000033470	Cysltr2	2300001H05Rik|CYSLT2R|Cltr2|Cyslt2	cysteinyl leukotriene receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36559886-4	chr18	36559404	36560404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175375)	promoter-TSS (NM_175375)	-699.0	NM_175375	108857.0	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36941362-4	chr16	36940860	36941860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008225, intron 3 of 13)	intron (NM_008225, intron 3 of 13)	6377.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-118302152-4	chr12	118301675	118302675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009239)	promoter-TSS (NM_009239)	-735.0	NM_001166385	20688.0	Mm.34699	NM_009239	ENSMUSG00000025323	Sp4	5730497N03Rik|HF-1b|HF1-b	trans-acting transcription factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167538038-4	chr2	167537558	167538558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011427)	promoter-TSS (NM_011427)	-137.0	NM_011427	20613.0	Mm.2093	NM_011427	ENSMUSG00000042821	Snai1	Sna|Sna1|Snail|Snail1	snail family zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127588234-4	chr7	127587713	127588713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172281)	promoter-TSS (NM_172281)	382.0	NM_001033040	233899.0	Mm.25220	NM_001033040	ENSMUSG00000057176	Ccdc189	Gm166	coiled-coil domain containing 189	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70791780-4	chr11	70791272	70792272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045526, intron 4 of 4)	intron (NM_001045526, intron 4 of 4)	20789.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140322010-2	chr5	140321510	140322510	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010752)	promoter-TSS (NM_010752)	388.0	NM_001356585	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	1.0	3.5	3.5	1.0	3.5	3.5
Merged-chr13-54071892-6	chr13	54071423	54072423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027324)	promoter-TSS (NM_027324)	78.0	NM_027324	14057.0	Mm.134191	NM_027324	ENSMUSG00000021474	Sfxn1	2810002O05Rik|A930015P12Rik|f	sideroflexin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18976405-4	chr2	18975904	18976904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	ORR1F|LTR|ERVL-MaLR	21717.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-91070072-4	chr8	91069570	91070570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282000)	promoter-TSS (NM_001282000)	13.0	NM_001282000	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	203.0	357.0	315.0	183.5	351.5	312.0
Merged-chr7-80993661-6	chr7	80993118	80994118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178707)	promoter-TSS (NM_178707)	-66.0	NM_178707	233410.0	Mm.29525	NM_178707	ENSMUSG00000005621	Zfp592	A730014M16Rik|Znf592	zinc finger protein 592	protein-coding	24.0	70.0	75.5	26.0	63.5	64.0
Merged-chr14-54768528-4	chr14	54768020	54769020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	13366.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	59.0	165.0	94.0	32.0	234.5	112.5
Merged-chr2-166623349-4	chr2	166622840	166623840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 5 of 39)	intron (NM_177782, intron 5 of 39)	58818.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4003821-4	chr16	4003312	4004312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2134.0	NM_177472	52864.0	Mm.29935	NM_177472	ENSMUSG00000039738	Slx4	AI256635|AI426760|Btbd12|D16Bwg1016e	SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6708310-4	chr15	6707809	6708809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030168)	promoter-TSS (NM_030168)	-72.0	NM_030168	78757.0	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36515234-2	chr18	36514734	36515734	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010415, exon 2 of 6)	exon (NM_010415, exon 2 of 6)	571.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-42339418-4	chr6	42338903	42339903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-10425.0	NM_001289619	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-36151034-4	chr3	36150518	36151518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001101478)	promoter-TSS (NM_001101478)	-62.0	NM_001101478	241944.0	Mm.260056	NM_001101478	ENSMUSG00000033883	D3Ertd254e	-	DNA segment, Chr 3, ERATO Doi 254, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40800108-4	chr9	40799604	40800604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1169.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	440.0	867.0	619.5	407.0	914.0	601.0
Merged-chr1-171345620-4	chr1	171345098	171346098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360824)	promoter-TSS (NM_001360824)	47.0	NM_001242580	27045.0	Mm.12915	NM_012049	ENSMUSG00000013997	Nit1	AI255805|ESTM30|W57327	nitrilase 1	protein-coding	40.0	98.0	75.0	42.0	98.5	98.5
Merged-chr4-62512282-2	chr4	62511782	62512782	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276446, intron 4 of 11)	intron (NM_001276446, intron 4 of 11)	7627.0	NM_001276446	17025.0	Mm.6988	NM_008525	ENSMUSG00000028393	Alad	ALADH|Lv	aminolevulinate, delta-, dehydratase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-46245944-4	chr2	46245435	46246435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	549330.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27768008-4	chr2	27767513	27768513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	57430.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-67715412-3	chr14	67714923	67715923	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285933)	promoter-TSS (NM_001285933)	187.0	NM_001110162	108912.0	Mm.33831	NM_175384	ENSMUSG00000048922	Cdca2	2610311M19Rik|AI586158	cell division cycle associated 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90397057-4	chr16	90396549	90397549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015755, intron 1 of 10)	MLTR14|LTR|ERV1	10652.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-32460586-4	chr6	32460082	32461082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-50559.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43802952-4	chr13	43802451	43803451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001289915, exon 5 of 5)	3' UTR (NM_001289915, exon 5 of 5)	17839.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125271694-4	chr6	125271209	125272209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015527, intron 3 of 3)	intron (NR_015527, intron 3 of 3)	6184.0	NR_015527	73870.0	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	5.5	39.0	18.0	21.5	23.5	5.5
Merged-chr1-155973326-4	chr1	155972865	155973865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039184)	promoter-TSS (NM_001039184)	-110.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	27.5	84.0	55.0	49.5	102.5	53.5
Merged-chr2-166623750-4	chr2	166623206	166624206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 5 of 39)	L1M4|LINE|L1	59184.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95301288-2	chr10	95300788	95301788	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	22421.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88731409-4	chr10	88730902	88731902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025859)	promoter-TSS (NM_025859)	-12.0	NM_025859	104303.0	Mm.291247	NM_025859	ENSMUSG00000060904	Arl1	2310008D22Rik|AU019749	ADP-ribosylation factor-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-122805581-4	chr9	122805121	122806121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013405)	promoter-TSS (NM_001013405)	74.0	NM_001013405	382117.0	Mm.215892	NM_001013405	ENSMUSG00000046603	Tcaim	D9Ertd402e|Gm1129|TOAG-1	T cell activation inhibitor, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123102357-4	chr8	123101875	123102875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016738)	promoter-TSS (NM_016738)	25.0	NM_016738	270106.0	Mm.319719	NM_016738	ENSMUSG00000000740	Rpl13	A52|L13	ribosomal protein L13	protein-coding	16.0	35.5	28.0	9.0	52.5	43.0
Merged-chr15-97576922-4	chr15	97576417	97577417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	128905.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55560681-5	chr14	55560119	55561119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199009)	promoter-TSS (NM_001199009)	-304.0	NM_001199009	28199.0	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50170096-4	chr17	50169618	50170618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 1 of 9)	(CA)n|Simple_repeat|Simple_repeat	20379.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-23380200-4	chr1	23379665	23380665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081079, intron 1 of 6)	intron (NM_001081079, intron 1 of 6)	3010.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138262570-4	chr1	138262063	138263063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-11175.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105594766-4	chr5	105594274	105595274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	75303.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18733318-4	chr16	18732846	18733846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43501.0	NM_013805	12741.0	Mm.22768	NM_013805	ENSMUSG00000041378	Cldn5	AI854493|MBEC1|Tmvcf	claudin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-68867357-4	chr2	68866842	68867842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	intron (NM_001347161, intron 1 of 10)	5901.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35131586-4	chr12	35131091	35132091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014973, intron 20 of 25)	ORR1D1-int|LTR|ERVL-MaLR	63306.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	40.5	83.0	85.5	37.5	86.0	50.0
Merged-chr10-99081746-4	chr10	99081230	99082230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25352.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36719435-4	chr15	36718938	36719938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71494.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97988932-4	chr11	97988422	97989422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_152188)	TTS (NR_152188)	-2476.0	NM_001163608	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88635783-4	chr1	88635278	88636278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66413.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131095812-4	chr1	131095295	131096295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	2048.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	58.0	233.5	140.5	75.0	242.0	99.0
Merged-chr9-111288509-2	chr9	111288010	111289010	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16665.0	NM_175266	77781.0	Mm.209005	NM_175266	ENSMUSG00000046785	Epm2aip1	A930003G21Rik|mKIAA0766	EPM2A (laforin) interacting protein 1	protein-coding	13.5	12.5	9.0	19.5	15.0	7.0
Merged-chr14-77034731-4	chr14	77034264	77035264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172488, intron 3 of 7)	intron (NM_172488, intron 3 of 7)	1853.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	69.0	220.5	122.5	73.5	220.5	102.5
Merged-chr1-74434711-4	chr1	74434199	74435199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310662)	TTS (NM_001310662)	25315.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135914125-1	chr7	135913625	135914625	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-197746.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-75962198-4	chr16	75961701	75962701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38583.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98878032-4	chr10	98877513	98878513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36629.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-3081851-4	chr17	3081344	3082344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003519, intron 1 of 7)	intron (NR_003519, intron 1 of 7)	2339.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61401863-4	chr18	61401359	61402359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1428.0	NM_133249	170826.0	Mm.415302	NM_133249	ENSMUSG00000033871	Ppargc1b	4631412G21Rik|Perc	peroxisome proliferative activated receptor, gamma, coactivator 1 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171957531-4	chr1	171957030	171958030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38174.0	NR_151536	105244010.0	Mm.417758	NR_151535		Gm37065	-	predicted gene, 37065	ncRNA	4.0	14.5	8.0	4.0	7.5	5.5
Merged-chr1-53855909-4	chr1	53855386	53856386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 19 of 28)	intron (NM_001001883, intron 19 of 28)	6462.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	4.5	1.5	0.5	1.5	0.5	0.0
Merged-chr13-51849708-2	chr13	51849208	51850208	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3033.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-31671937-4	chr11	31671432	31672432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024919)	promoter-TSS (NM_001024919)	-70.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	19.5	81.0	36.0	52.0	93.0	80.0
Merged-chr1-64121721-4	chr1	64121236	64122236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033563)	promoter-TSS (NM_033563)	-347.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16120064-4	chr7	16119492	16120492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133727, exon 1 of 12)	exon (NM_133727, exon 1 of 12)	116.0	NM_133727	70394.0	Mm.41101	NM_133727	ENSMUSG00000006021	Kptn	2310042D10Rik|2E4|C030013F01Rik	kaptin	protein-coding	0.0	8.0	1.0	0.5	2.5	3.5
Merged-chr10-78144327-4	chr10	78143835	78144835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25433.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65717709-4	chr17	65717227	65718227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 2 of 6)	intron (NM_133685, intron 2 of 6)	55025.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119016017-4	chr2	119015497	119016497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13396.0	NM_199310	269336.0	Mm.292465	NM_199310	ENSMUSG00000039983	Ccdc32	Gm631	coiled-coil domain containing 32	protein-coding	47.0	76.5	42.5	11.0	42.0	33.5
Merged-chr2-44956428-4	chr2	44955915	44956915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66762.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-62681173-4	chr2	62680661	62681661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145523, intron 3 of 7)	HAL1|LINE|L1	16834.0	NM_145523	227960.0	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47259133-4	chr14	47258641	47259641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360532, intron 13 of 24)	B1_Mm|SINE|Alu	17716.0	NM_001360532	218973.0	Mm.265615	NM_172598	ENSMUSG00000037572	Wdhd1	A630092E18|AND-1|D630024B06Rik	WD repeat and HMG-box DNA binding protein 1	protein-coding	13.5	34.5	19.5	17.5	44.0	33.5
Merged-chr4-132535603-4	chr4	132535100	132536100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172400)	promoter-TSS (NM_172400)	41.0	NM_172400	68598.0	Mm.29685	NM_172400	ENSMUSG00000054405	Dnajc8	1110021D09Rik|2010009J04Rik|AL024084|AU019262|AU044514	DnaJ heat shock protein family (Hsp40) member C8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-85434080-4	chr6	85433589	85434589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144918, intron 1 of 12)	intron (NM_144918, intron 1 of 12)	2113.0	NM_144918	232187.0	Mm.219946	NM_144918	ENSMUSG00000033706	Smyd5	AW536703|NN8-4AG|Rai15|Rrg1	SET and MYND domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11676174-4	chr16	11675686	11676686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 18 of 20)	intron (NM_028964, intron 18 of 20)	-103516.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-60735180-2	chr14	60734680	60735680	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310594, intron 1 of 9)	intron (NM_001310594, intron 1 of 9)	2276.0	NM_001310594	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-33310258-4	chr4	33309765	33310765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011884)	promoter-TSS (NM_011884)	-46.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80553833-4	chr17	80553341	80554341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360144, intron 3 of 9)	intron (NM_001360144, intron 3 of 9)	9993.0	NM_001033443	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170202168-4	chr2	170201675	170202675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59500.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	1.0	5.5	4.0	1.0	5.5	5.5
Merged-chr12-112581289-4	chr12	112580777	112581777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7507.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-13980470-4	chr1	13979971	13980971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-193542.0	NR_004447	433273.0	Mm.304088	NR_004447	ENSMUSG00000097711	Gm5523	EG433273	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73054253-4	chr2	73053753	73054753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73807.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4896819-4	chr16	4896326	4897326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 1 of 17)	intron (NM_001357062, intron 1 of 17)	10726.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-133583039-4	chr3	133582443	133583443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38553.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-157017685-4	chr1	157017177	157018177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78051.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	24.5	35.0	24.5	24.0	40.0	31.0
Merged-chr3-52502370-4	chr3	52501886	52502886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14578.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-109832779-6	chr9	109832245	109833245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018757)	promoter-TSS (NM_018757)	-49.0	NM_018757	54369.0	Mm.12951	NM_018757	ENSMUSG00000032478	Nme6	nm23-M6	NME/NM23 nucleoside diphosphate kinase 6	protein-coding	11.5	22.0	11.0	5.5	18.0	16.0
Merged-chr17-87327150-4	chr17	87326652	87327652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 8 of 19)	intron (NM_028639, intron 8 of 19)	44266.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0.5	1.5	2.0	2.5	1.0	0.0
Merged-chr8-3467666-4	chr8	3467176	3468176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026951)	promoter-TSS (NM_026951)	-28.0	NM_026951	69129.0	Mm.45279	NM_026951	ENSMUSG00000069633	Pex11g	1810022F11Rik|1810049N02Rik|Pex11c|Pex11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141765215-3	chr4	141764727	141765727	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172338, intron 13 of 14)	intron (NM_172338, intron 13 of 14)	18552.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	0.0	8.5	7.0	30.5	109.0	67.5
Merged-chr4-40269840-4	chr4	40269342	40270342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134097)	promoter-TSS (NM_134097)	-1.0	NM_134097	106021.0	Mm.251548	NM_134097	ENSMUSG00000036822	Topors	AW105885|LUN|TP53BPL|p53BP3/LUN	topoisomerase I binding, arginine/serine-rich	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-91681262-4	chr13	91680760	91681760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 9 of 15)	intron (NM_001360776, intron 9 of 15)	-60261.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	28.0	15.0	32.5	10.0	9.5	28.0
Merged-chr18-38365088-4	chr18	38364589	38365589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-26096.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58128796-7	chr13	58128318	58129318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029872)	promoter-TSS (NM_029872)	-262.0	NM_029872	77134.0	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	125.5	261.5	193.0	126.0	237.0	185.0
Merged-chr4-128720244-4	chr4	128719767	128720767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 7 of 14)	intron (NM_018774, intron 7 of 14)	-7304.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55966366-4	chr16	55965895	55966895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_024218, exon 1 of 6)	5' UTR (NM_024218, exon 1 of 6)	120.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-100671220-4	chr6	100670717	100671717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181590)	promoter-TSS (NM_181590)	-60.0	NM_181590	72171.0	Mm.256022	NM_181590	ENSMUSG00000035378	Shq1	2810403P18Rik|Grim-1	SHQ1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80055114-2	chr10	80054614	80055614	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008162, exon 4 of 7)	exon (NM_008162, exon 4 of 7)	1095.0	NM_001037741	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24712053-4	chr10	24711545	24712545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008813, exon 1 of 25)	5' UTR (NM_008813, exon 1 of 25)	114.0	NM_001308327	18605.0	Mm.27254	NM_008813	ENSMUSG00000037370	Enpp1	4833416E15Rik|AI428932|C76301|CD203c|E-NPP 1|E-NPP1|Ly-41|M6S1|NPP1|Npps|PC-1|Pca|Pca-1|Pdnp1|ttw|twy	ectonucleotide pyrophosphatase/phosphodiesterase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47298167-4	chr14	47297647	47298647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360542)	promoter-TSS (NM_001360542)	-127.0	NM_178684	218975.0	Mm.212297	NM_178684	ENSMUSG00000021840	Mapk1ip1l	9130202B12|C130032J12Rik	mitogen-activated protein kinase 1 interacting protein 1-like	protein-coding	14.5	16.5	12.5	6.5	9.5	17.0
Merged-chr19-4397266-4	chr19	4396772	4397772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001984)	promoter-TSS (NM_001001984)	-195.0	NM_001001984	225876.0	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23633131-1	chr11	23632631	23633631	+	1000.0	f0_balb.idr	intron (NM_027860, intron 1 of 21)	intron (NM_027860, intron 1 of 21)	500.0	NM_001347242	71675.0	Mm.48031	NM_027860	ENSMUSG00000042208	0610010F05Rik	Kiaa1841|mKIAA1841	RIKEN cDNA 0610010F05 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23498073-4	chr11	23497562	23498562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290655)	promoter-TSS (NM_001290655)	-23.0	NM_172391	268390.0	Mm.13148	NM_172391	ENSMUSG00000020288	Ahsa2	-	AHA1, activator of heat shock protein ATPase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30717010-4	chr14	30716504	30717504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166532, intron 1 of 20)	intron (NM_001166532, intron 1 of 20)	1389.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	44.0	108.5	85.0	50.0	68.5	86.5
Merged-chr15-84923236-4	chr15	84922746	84923746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016714)	promoter-TSS (NM_016714)	-182.0	NM_016714	18141.0	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-55072106-4	chr15	55071606	55072606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081288)	promoter-TSS (NM_001081288)	46.0	NM_001081288	319944.0	Mm.380957	NM_001081288	ENSMUSG00000037343	Taf2	150kDa|4732460C16Rik|AI425886|CIF150|TAF2B|TAFII-150|TAFII150	TATA-box binding protein associated factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163664081-4	chr2	163663562	163664562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 2 of 4)	L1MB2|LINE|L1	5604.0	NM_001164053	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113485704-4	chr13	113485226	113486226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 2 of 6)	intron (NR_045501, intron 2 of 6)	17118.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120151360-4	chr11	120150868	120151868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164799)	promoter-TSS (NM_001164799)	-17.0	NM_001164798	72055.0	Mm.253403	NM_024249	ENSMUSG00000061306	Slc38a10	1810073N04Rik	solute carrier family 38, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21546627-4	chr9	21546118	21547118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021531)	promoter-TSS (NM_021531)	-276.0	NM_021531	59035.0	Mm.178115	NM_021531	ENSMUSG00000032185	Carm1	Prmt4	coactivator-associated arginine methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13525241-1	chr9	13524741	13525741	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	93880.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	0.0	0.0	1.0	0.0	2.5	5.5
Merged-chr2-90574374-4	chr2	90573894	90574894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	6253.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	28.5	64.5	33.5	21.5	58.5	52.0
Merged-chr19-8252526-2	chr19	8252026	8253026	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-33626.0	NM_001347426	236293.0	Mm.440581	NM_172776	ENSMUSG00000075044	Slc22a29	D630002G06Rik	solute carrier family 22. member 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45113171-3	chr9	45112675	45113675	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033547, intron 1 of 2)	intron (NR_033547, intron 1 of 2)	-4701.0	NM_001014761	72821.0	Mm.229373	NM_001014761	ENSMUSG00000070304	Scn2b	2810451E09Rik|AI840361|Gm183	sodium channel, voltage-gated, type II, beta	protein-coding	5.0	3.5	1.0	6.0	9.5	3.0
Merged-chr11-29549587-4	chr11	29549098	29550098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163521, intron 1 of 11)	intron (NM_001163521, intron 1 of 11)	-1558.0	NM_001033865	78294.0	Mm.180003	NM_024277	ENSMUSG00000020460	Rps27a	0610006J14Rik|Uba52|Ubb|Ubc	ribosomal protein S27A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-53882698-4	chr1	53882217	53883217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 17 of 28)	intron (NM_001001883, intron 17 of 28)	33293.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-70939332-3	chr2	70938835	70939835	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	79039.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111056283-4	chr8	111055786	111056786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028274)	promoter-TSS (NM_028274)	-53.0	NM_028274	72544.0	Mm.24174	NM_028274	ENSMUSG00000109941	Exosc6	2610510N21Rik|C76919|Mtr3	exosome component 6	protein-coding	14.0	10.0	14.5	12.5	52.0	17.5
Merged-chr16-13437272-4	chr16	13436774	13437774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12249.0	NR_030549	100124432.0		NR_030549	ENSMUSG00000076972	Mir193b	Mir193|Mirn193b|mir-193b	microRNA 193b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118008214-4	chr2	118007702	118008702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	103000.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	17.5	31.5	25.0	13.5	31.0	21.0
Merged-chr9-108340085-4	chr9	108339588	108340588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001329528, exon 3 of 3)	exon (NM_001329528, exon 3 of 3)	1008.0	NM_001329527	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	33.5	97.5	78.0	35.5	106.0	62.5
Merged-chr19-60598422-4	chr19	60597921	60598921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17398.0	NM_001172096	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	31.5	83.5	54.5	10.0	46.5	31.5
Merged-chr13-55445139-4	chr13	55444634	55445634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286063)	promoter-TSS (NM_001286063)	62.0	NM_001286063	26385.0	Mm.10193	NM_011938	ENSMUSG00000074886	Grk6	Gprk6	G protein-coupled receptor kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150798948-4	chr4	150798434	150799434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54862.0	NM_001356323	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56756281-4	chr18	56755771	56756771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48458.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	7.0	14.5	15.0	6.0	25.5	10.0
Merged-chr1-134435629-4	chr1	134435134	134436134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-19897.0	NM_153128	240756.0	Mm.87398	NM_153128	ENSMUSG00000026455	Klhl12	C3ip1	kelch-like 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108653928-4	chr3	108653424	108654424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145543)	promoter-TSS (NM_145543)	-3.0	NM_001355632	229725.0	Mm.214545	NM_145543	ENSMUSG00000027884	Clcc1	Mclc	chloride channel CLIC-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74459206-4	chr17	74458705	74459705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033367)	promoter-TSS (NM_001033367)	-97.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121381977-4	chr14	121381477	121382477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2747.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	20.0	21.5	49.5	25.5	35.0	43.0
Merged-chr13-90923045-7	chr13	90922544	90923544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024175)	promoter-TSS (NM_024175)	-78.0	NM_024175	66475.0	Mm.306302	NM_024175	ENSMUSG00000049517	Rps23	2410044J15Rik	ribosomal protein S23	protein-coding	180.5	349.5	257.0	117.0	314.0	227.0
Merged-chr2-155473882-4	chr2	155473381	155474381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GC_rich|Low_complexity|Low_complexity	-33098.0	NM_019825	56406.0	Mm.27592	NM_019825	ENSMUSG00000038369	Ncoa6	AIB3|ASC-2|ASC2|NRC|Ncoa7|PRIP|RAP250|mKIAA0181	nuclear receptor coactivator 6	protein-coding	0.0	5.0	1.0	0.0	2.5	0.0
Merged-chr14-61440072-4	chr14	61439575	61440575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008466)	promoter-TSS (NM_008466)	-128.0	NM_008466	16648.0	Mm.25548	NM_008466	ENSMUSG00000021929	Kpna3	IPOA4	karyopherin (importin) alpha 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34331099-4	chr18	34330600	34331600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025527)	promoter-TSS (NM_025527)	-45.0	NM_025527	66384.0	Mm.29452	NM_025527	ENSMUSG00000014504	Srp19	2310020D23Rik	signal recognition particle 19	protein-coding	43.0	155.0	127.5	67.0	109.5	109.5
Merged-chr1-80389798-2	chr1	80389298	80390298	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49108.0	NM_016716	26554.0	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75887682-4	chr15	75887186	75888186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282443, intron 3 of 13)	intron (NM_001282443, intron 3 of 13)	1037.0	NM_001282443	223645.0		NM_001282443	ENSMUSG00000098678	Mroh6	Gm19570	maestro heat-like repeat family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-42424701-4	chr6	42424214	42425214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9821.0	NM_207028	387353.0	Mm.377914	NM_207028	ENSMUSG00000048284	Tas2r126	T2R12|T2R26|Tas2r26|Tas2r41|mGR26|mt2r35	taste receptor, type 2, member 126	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-118135570-4	chr4	118135054	118136054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161774)	promoter-TSS (NM_001161774)	-608.0	NM_001161774	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44634915-4	chr10	44634393	44635393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-176145.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43660156-4	chr7	43659659	43660659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031181)	promoter-TSS (NM_031181)	2.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143020933-4	chr7	143020432	143021432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_110354)	TTS (NR_110354)	15273.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	8.0	7.0	1.5	5.5	2.5	1.5
Merged-chr2-181581874-4	chr2	181581337	181582337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164597)	TTS (NM_001164597)	136.0	NM_026765	68556.0	Mm.232400	NM_026765	ENSMUSG00000089917	Uckl1	1110007H10Rik|Urkl1	uridine-cytidine kinase 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99159326-1	chr7	99158826	99159826	+	1000.0	f1_balb.idr	intron (NM_026384, intron 4 of 7)	intron (NM_026384, intron 4 of 7)	-18182.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0.5	14.5	10.5	6.5	15.0	5.0
Merged-chr8-94778678-4	chr8	94778140	94779140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009142, intron 2 of 2)	intron (NM_009142, intron 2 of 2)	6460.0	NM_009142	20312.0	Mm.103711	NM_009142	ENSMUSG00000031778	Cx3cl1	AB030188|ABCD-3|AI848747|CX3C|Cxc3|D8Bwg0439e|Scyd1	chemokine (C-X3-C motif) ligand 1	protein-coding	11.5	12.5	19.5	8.0	19.0	17.0
Merged-chr12-85385898-4	chr12	85385397	85386397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11180.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-172440511-4	chr2	172440014	172441014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025542)	promoter-TSS (NM_025542)	-64.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43560280-4	chr13	43559773	43560773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081059)	promoter-TSS (NM_001081059)	-82.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-101913150-4	chr12	101912636	101913636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028446)	promoter-TSS (NM_028446)	35.0	NM_028446	109181.0	Mm.208618	NM_028446	ENSMUSG00000021188	Trip11	2610511G22Rik|3110031G15Rik|6030460N08Rik|AI450776|GMAP-210|TRIP230	thyroid hormone receptor interactor 11	protein-coding	33.0	117.0	107.0	39.5	110.0	116.0
Merged-chr15-39957827-4	chr15	39957345	39958345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4804.0	NR_045719	105976.0	Mm.394885	NR_045719		AU022793	-	expressed sequence AU022793	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70107188-4	chr14	70106694	70107694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021328, intron 1 of 8)	intron (NM_021328, intron 1 of 8)	7101.0	NM_001360404	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25910292-4	chr15	25909765	25910765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 3 of 8)	intron (NM_001034851, intron 3 of 8)	-23287.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32570853-4	chr2	32570367	32571367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010073)	promoter-TSS (NM_010073)	9.0	NM_010073	13481.0	Mm.22001	NM_010073	ENSMUSG00000026810	Dpm2	AW557993|R75484	dolichol-phosphate (beta-D) mannosyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83367402-4	chr15	83366906	83367906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027980)	promoter-TSS (NR_027980)	-109.0	NR_027980	69291.0	Mm.66794	NM_001033147		1700001L05Rik	-	RIKEN cDNA 1700001L05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173430538-4	chr1	173430050	173431050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 2 of 8)	ORR1F|LTR|ERVL-MaLR	9946.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	20.0	67.5	63.0	20.5	65.0	51.0
Merged-chr2-73475850-4	chr2	73475340	73476340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	MLT1F2|LTR|ERVL-MaLR	9913.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57071959-4	chr9	57071453	57072453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045886)	promoter-TSS (NR_045886)	13.0	NR_045886	100038566.0	Mm.361900	NR_045886		Gm10658	-	predicted gene 10658	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29253979-4	chr19	29253477	29254477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008413, intron 2 of 24)	intron (NM_008413, intron 2 of 24)	2174.0	NM_008413	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103826530-4	chr14	103826031	103827031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276296, intron 1 of 7)	intron (NM_001276296, intron 1 of 7)	17170.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84989556-4	chr8	84989061	84990061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1034.0	NM_133255	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	8.0	58.5	34.5	33.0	33.5	30.5
Merged-chr19-10859485-4	chr19	10858972	10859972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133804, intron 10 of 10)	intron (NM_133804, intron 10 of 10)	10307.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53931239-4	chr11	53930723	53931723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39520.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-133443634-4	chr2	133443122	133444122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108537.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-107708469-4	chr5	107707971	107708971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4991.0	NR_045871	654809.0	Mm.399159	NR_045871	ENSMUSG00000106333	4930428O21Rik	-	RIKEN cDNA 4930428O21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191894583-4	chr1	191894067	191895067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030669, exon 5 of 5)	non-coding (NR_030669, exon 5 of 5)	-12214.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	14.0	34.0	43.0	29.5	28.5	44.5
Merged-chr4-120926269-4	chr4	120925761	120926761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-1256.0	NM_001160043	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53134398-4	chr15	53133905	53134905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	211778.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120493365-2	chr8	120492865	120493865	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	4499.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124649211-4	chr2	124648715	124649715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	RMER15|LTR|ERVL	-4366.0	NM_199240	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121947886-4	chr8	121947366	121948366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2626.0	NM_016812	53325.0	Mm.287163	NM_016812	ENSMUSG00000025316	Banp	AA408158|SMAR1	BTG3 associated nuclear protein	protein-coding	40.0	40.5	38.5	17.5	63.5	31.0
Merged-chr4-139176026-4	chr4	139175539	139176539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033543, exon 3 of 3)	non-coding (NR_033543, exon 3 of 3)	4616.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	72.0	234.0	146.5	97.0	345.0	155.0
Merged-chr13-100744214-4	chr13	100743711	100744711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025369, intron 1 of 3)	CpG	448.0	NM_001190264	66128.0	Mm.306173	NM_025369	ENSMUSG00000061474	Mrps36	1110018B13Rik|S36mt	mitochondrial ribosomal protein S36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135820417-4	chr4	135819911	135820911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35660.0	NM_001284196	14105.0	Mm.10229	NM_010178	ENSMUSG00000028676	Srsf10	FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11420452-4	chr16	11419949	11420949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 10 of 20)	Tigger17|DNA|TcMar-Tigger	14801.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76687240-3	chr14	76686744	76687744	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_015485)	TTS (NR_015485)	9676.0	NR_015485	73272.0	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA	1.5	12.5	1.5	8.5	1.0	0.0
Merged-chr19-5818112-4	chr19	5817608	5818608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15436.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17234796-4	chr17	17234224	17235224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362181)	promoter-TSS (NM_001362181)	-179.0	NM_001362181	102640673.0		NM_001362181		LOC102640673	-	zinc finger protein 431-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105803820-4	chr3	105803336	105804336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2455.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	37.5	59.5	53.0	25.0	35.0	52.5
Merged-chr4-131861229-5	chr4	131860685	131861685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025297, intron 5 of 9)	MIRc|SINE|MIR	-12454.0	NM_020587	57317.0	Mm.2478	NM_020587	ENSMUSG00000028911	Srsf4	5730499P16Rik|AW550192|MNCb-2616|SRp75|Sfrs4	serine/arginine-rich splicing factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105663254-4	chr1	105662737	105663737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029349)	promoter-TSS (NM_029349)	439.0	NM_013784	27392.0	Mm.268911	NM_013784	ENSMUSG00000056536	Pign	Gm20308|PIG-N	phosphatidylinositol glycan anchor biosynthesis, class N	protein-coding	22.5	98.5	79.5	64.0	98.0	53.5
Merged-chr2-155592762-4	chr2	155592264	155593264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008180)	promoter-TSS (NM_008180)	46.0	NM_001291111	14854.0	Mm.252316	NM_008180	ENSMUSG00000027610	Gss	AI314904|GS-A/GS-B|GSH-S	glutathione synthetase	protein-coding	37.0	51.0	66.5	16.0	88.0	58.0
Merged-chr19-21126846-4	chr19	21126344	21127344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22134.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-48875964-2	chr7	48875464	48876464	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013368, intron 4 of 12)	intron (NM_001013368, intron 4 of 12)	5077.0	NM_001013368	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164858327-4	chr2	164857817	164858817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011125)	promoter-TSS (NM_011125)	-609.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	38.5	38.0	25.5	22.5	37.0	46.0
Merged-chr18-77800117-4	chr18	77799632	77800632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 1 of 14)	intron (NM_013831, intron 1 of 14)	-3742.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18876595-4	chr16	18876101	18877101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010922)	promoter-TSS (NM_010922)	36.0	NM_010922	18100.0	Mm.20918	NM_010922	ENSMUSG00000022706	Mrpl40	Nlvcf	mitochondrial ribosomal protein L40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51326967-4	chr3	51326434	51327434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 1 of 9)	MTC|LTR|ERVL-MaLR	13710.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57554721-2	chr16	57554222	57555222	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	5480.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	32.0	78.0	82.0	23.5	81.5	35.0
Merged-chr5-25760032-4	chr5	25759557	25760557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310504)	promoter-TSS (NM_001310504)	84.0	NM_001004365	242894.0	Mm.150319	NM_001004365	ENSMUSG00000056367	Actr3b	9630005C02|ARP11|AW047569|Arp3b|Arp3beta	ARP3 actin-related protein 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87749660-4	chr11	87749191	87750191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7173.0	NR_029555	387160.0		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	165.5	529.5	349.5	179.5	482.0	269.0
Merged-chr6-140624209-4	chr6	140623735	140624735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001309437)	promoter-TSS (NM_001309437)	-674.0	NM_001309437	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69683909-2	chr11	69683409	69684409	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001034097, exon 12 of 13)	exon (NM_001034097, exon 12 of 13)	1645.0	NM_001159505	69583.0	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	8.5	35.0	11.5	4.0	31.0	23.0
Merged-chr14-75790551-4	chr14	75790049	75791049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-3512.0	NM_026232	67554.0	Mm.46067	NM_026232	ENSMUSG00000022003	Slc25a30	4933433D23Rik|AV025504|AV221431|AW319655|KMCP1	solute carrier family 25, member 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36582001-4	chr5	36581508	36582508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113362, intron 2 of 14)	CpG	389.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	33.5	63.0	43.0	8.0	53.5	21.0
Merged-chr2-90501030-2	chr2	90500530	90501530	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	ORR1C2|LTR|ERVL-MaLR	-21856.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63082776-1	chr14	63082276	63083276	+	1000.0	f1_balb.idr	Intergenic	L1_Mus3|LINE|L1	27703.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134653072-4	chr4	134652557	134653557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 1 of 11)	L2b|LINE|L2	51233.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46039656-4	chr19	46039173	46040173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010697)	promoter-TSS (NM_010697)	-52.0	NM_010697	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105801384-4	chr1	105800887	105801887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	20664.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29009303-2	chr7	29008803	29009803	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009109, intron 99 of 105)	intron (NM_009109, intron 99 of 105)	26449.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr4-123928160-4	chr4	123927663	123928663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017475, intron 5 of 6)	intron (NM_017475, intron 5 of 6)	10730.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	20.0	15.0	14.5	18.0	47.0	19.0
Merged-chr2-43545875-4	chr2	43545384	43546384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR25C|LTR|ERVK	-9441.0	NM_001289593	70789.0	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78413016-4	chr10	78412514	78413514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010925)	promoter-TSS (NM_010925)	29.0	NM_010925	18114.0	Mm.38344	NM_010925	ENSMUSG00000061032	Rrp1	AL033305|AL033306|AU018604|NNP-1|Nnp1	ribosomal RNA processing 1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100182589-4	chr7	100182088	100183088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190869, intron 3 of 4)	intron (NM_001190869, intron 3 of 4)	3905.0	NM_001190871	57442.0	Mm.282386	NM_020574	ENSMUSG00000035165	Kcne3	2210017H05Rik|MiRP2	potassium voltage-gated channel, Isk-related subfamily, gene 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-72834797-4	chr17	72834336	72835336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1792.0	NM_027166	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	22.5	30.5	49.5	22.5	31.0	49.5
Merged-chr11-70594399-4	chr11	70593889	70594889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 1 of 30)	intron (NM_016713, intron 1 of 30)	-21505.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	14.5	40.5	31.0	28.5	42.5	47.5
Merged-chr16-4939086-4	chr16	4938578	4939578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025839)	promoter-TSS (NM_025839)	-33.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-53297119-4	chr1	53296650	53297650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153556)	promoter-TSS (NM_153556)	55.0	NM_145517	227102.0	Mm.212846	NM_145517	ENSMUSG00000026097	Ormdl1	C730042F17Rik	ORM1-like 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41981381-4	chr19	41980859	41981859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145500)	promoter-TSS (NM_145500)	-223.0	NM_028152	72199.0	Mm.218940	NM_028152	ENSMUSG00000025159	Mms19	2410001K24Rik|2610042O15Rik|AI316855|C79368|C86341|Mms19l	MMS19 (MET18 S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-51008036-2	chr9	51007536	51008536	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178710, intron 1 of 15)	intron (NM_178710, intron 1 of 15)	1037.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55714114-4	chr19	55713584	55714584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11880.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	2.5	8.0	5.0	4.0	8.5	2.0
Merged-chr1-135132610-4	chr1	135132109	135133109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356382)	promoter-TSS (NM_001356382)	-34.0	NM_007955	13924.0	Mm.4450	NM_007955		Ptprv	Esp|OST|OST-PTP	protein tyrosine phosphatase, receptor type, V	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105938471-2	chr8	105937971	105938971	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013640)	promoter-TSS (NM_013640)	-79.0	NM_013640	19171.0	Mm.787	NM_013640	ENSMUSG00000031897	Psmb10	Mecl-1|Mecl1	proteasome (prosome, macropain) subunit, beta type 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-4191173-4	chr13	4190679	4191679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013778)	promoter-TSS (NM_013778)	-8.0	NM_013778	27384.0	Mm.27447	NM_013778	ENSMUSG00000021213	Akr1c13	mKIAA4014	aldo-keto reductase family 1, member C13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88274416-2	chr1	88273916	88274916	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198652, intron 3 of 7)	intron (NM_198652, intron 3 of 7)	3141.0	NM_172505	212427.0	Mm.384762	NM_172505		A730008H23Rik	Fleg1	RIKEN cDNA A730008H23 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31305646-4	chr17	31305148	31306148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242427, intron 2 of 19)	intron (NM_001242427, intron 2 of 19)	9424.0	NM_001242427	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34119415-4	chr17	34118889	34119889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037970, exon 1 of 13)	non-coding (NR_037970, exon 1 of 13)	511.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	47.0	122.0	103.5	63.0	149.5	104.5
Merged-chr9-7345680-4	chr9	7345184	7346184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001320077, intron 1 of 10)	intron (NM_001320077, intron 1 of 10)	1287.0	NM_001320077	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21734281-4	chr13	21733772	21734772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178210)	promoter-TSS (NM_178210)	-762.0	NM_178210	319159.0		NM_178210	ENSMUSG00000067455	Hist1h4j	-	histone cluster 1, H4j	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125422491-4	chr6	125421979	125422979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-41975.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0.0	3.5	0.0	0.0	3.5	0.0
Merged-chr16-37689442-4	chr16	37688948	37689948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-35080.0	NM_026610	68194.0	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153632725-4	chr2	153632242	153633242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195390)	promoter-TSS (NM_001195390)	39.0	NM_001195390	99311.0	Mm.294478	NM_133850	ENSMUSG00000056941	Commd7	2310010I22Rik|AW060956|mU3	COMM domain containing 7	protein-coding	61.5	147.0	115.0	76.0	175.0	120.0
Merged-chr15-100552037-4	chr15	100551510	100552510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033476)	promoter-TSS (NM_033476)	-2.0	NM_001289603	21422.0	Mm.219040	NM_033476	ENSMUSG00000009733	Tfcp2	CP-2|CP2|D230015P20Rik|LBP-1c|LBP-1d|LBP1|LSF|Tcfcp2|UBP-1	transcription factor CP2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-136426741-4	chr3	136426250	136427250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22599.0	NR_040592	70055.0	Mm.261063	NR_040592	ENSMUSG00000099508	1700030L20Rik	-	RIKEN cDNA 1700030L20 gene	ncRNA	0.0	0.0	0.0	0.0	2.5	4.0
Merged-chr16-35939866-4	chr16	35939375	35940375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013371)	promoter-TSS (NM_001013371)	-848.0	NM_001013371	209200.0	Mm.390852	NM_001013371	ENSMUSG00000049502	Dtx3l	AU042200|BC023741	deltex 3-like, E3 ubiquitin ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4559665-4	chr2	4559172	4560172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177844)	promoter-TSS (NM_001177844)	-82.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-12922695-4	chr10	12922206	12923206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_038027, exon 1 of 4)	non-coding (NR_038027, exon 1 of 4)	421.0	NR_038027	320273.0	Mm.417706	NR_038027	ENSMUSG00000097378	B230208H11Rik	-	RIKEN cDNA B230208H11 gene	ncRNA	44.5	66.0	63.0	25.0	51.5	55.5
Merged-chr2-13271442-4	chr2	13270945	13271945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009105)	promoter-TSS (NM_009105)	-30.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11475895-4	chr8	11475404	11476404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-2025.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141874349-4	chr4	141873850	141874850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	570.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	61.0	173.0	153.0	60.0	172.5	132.5
Merged-chr12-57230412-4	chr12	57229914	57230914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037746)	promoter-TSS (NM_001037746)	2.0	NM_001037746	328099.0	Mm.268180	NM_001037746	ENSMUSG00000079104	Prps1l3	AU021838|AW536152|Gm5081	phosphoribosyl pyrophosphate synthetase 1-like 3	protein-coding	2.5	34.5	18.5	14.5	22.0	25.0
Merged-chr6-149375310-4	chr6	149374817	149375817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33667.0	NM_001112796	12121.0	Mm.177181	NM_009753	ENSMUSG00000003452	Bicd1	B830009D06Rik|bic-D 1	BICD cargo adaptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36633780-4	chr16	36633283	36634283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	32294.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-59130850-2	chr12	59130350	59131350	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165253)	promoter-TSS (NM_001165253)	-603.0	NM_001165253	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145803054-4	chr6	145802552	145803552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5331.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99483745-4	chr7	99483242	99484242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012052)	promoter-TSS (NM_012052)	-33.0	NM_012052	27050.0	Mm.236868	NM_012052	ENSMUSG00000030744	Rps3	D7Ertd795e|Rs_3	ribosomal protein S3	protein-coding	24.0	79.0	46.0	30.5	84.0	63.5
Merged-chr1-74241048-1	chr1	74240548	74241548	+	1000.0	f0_balb.idr	intron (NM_001357387, intron 2 of 10)	intron (NM_001357387, intron 2 of 10)	4531.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40589445-4	chr19	40588932	40589932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019698)	promoter-TSS (NM_019698)	-969.0	NM_153554	56454.0	Mm.233117	NM_019698	ENSMUSG00000025007	Aldh18a1	2810433K04Rik|AI429789|Pycs	aldehyde dehydrogenase 18 family, member A1	protein-coding	2.5	1.0	4.0	1.0	6.0	13.0
Merged-chr17-55879036-4	chr17	55878556	55879556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144546)	promoter-TSS (NM_144546)	-103.0	NM_144546	104349.0	Mm.460659	NM_144546	ENSMUSG00000057835	Zfp119a	AL024077|Mzf13|Zfp119	zinc finger protein 119a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-14345713-4	chr14	14345202	14346202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008369)	promoter-TSS (NM_008369)	-793.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75774746-2	chr10	75774246	75775246	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133994, exon 5 of 5)	3' UTR (NM_133994, exon 5 of 5)	-1372.0	NM_010027	13202.0	Mm.298947	NM_010027	ENSMUSG00000001666	Ddt	C78655	D-dopachrome tautomerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100495293-4	chr15	100494797	100495797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153407)	promoter-TSS (NM_153407)	-58.0	NM_153407	207785.0	Mm.294969	NM_153407	ENSMUSG00000044636	Csrnp2	CSRNP-2|Csnrp2|taip-12	cysteine-serine-rich nuclear protein 2	protein-coding	20.0	64.5	54.5	8.0	26.5	15.0
Merged-chr2-153170631-4	chr2	153170128	153171128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	L1ME1|LINE|L1	9327.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85824741-4	chr12	85824280	85825280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081423)	promoter-TSS (NM_001081423)	113.0	NM_001360451	58520.0	Mm.143795	NM_021446	ENSMUSG00000021252	Erg28	0610007P14Rik|1190004E09Rik|AU019315|C77855|ORF11	ergosterol biosynthesis 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73056308-4	chr2	73055790	73056790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75844.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57438207-1	chr10	57437707	57438707	+	1000.0	f1_balb.idr	Intergenic	L1VL4|LINE|L1	48146.0	NR_045353	74928.0	Mm.416643	NR_045353	ENSMUSG00000097370	4930467K11Rik	-	RIKEN cDNA 4930467K11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80062324-4	chr17	80061818	80062818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144802)	promoter-TSS (NM_144802)	-50.0	NM_144802	72692.0	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99182346-4	chr10	99181850	99182850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	74215.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118658852-4	chr9	118658339	118659339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 6 of 27)	intron (NM_133721, intron 6 of 27)	52130.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73617783-4	chr15	73617263	73618263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357747)	promoter-TSS (NM_001357747)	-439.0	NM_001357747	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97775026-4	chr3	97774517	97775517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 8 of 46)	intron (NM_001039376, intron 8 of 46)	-7003.0	NR_110360	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120566416-2	chr9	120565916	120566916	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178676, exon 11 of 11)	exon (NM_178676, exon 11 of 11)	-5101.0	NM_025974	67115.0	Mm.289810	NM_025974	ENSMUSG00000025794	Rpl14	3100001N19Rik|AA407502|AL022816|CAG-ISL-7|CTG-B33|L14	ribosomal protein L14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-8644158-4	chr13	8643656	8644656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110345, intron 3 of 10)	ORR1E|LTR|ERVL-MaLR	226888.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132551936-4	chr7	132551451	132552451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24447.0	NM_016978	18242.0	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137388553-4	chr4	137388045	137389045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	21246.0	NM_001126318	242711.0	Mm.475541	NM_001126318	ENSMUSG00000078520	Cela3a	Gm13011	chymotrypsin-like elastase family, member 3A	protein-coding	94.0	284.5	207.0	147.5	299.5	205.5
Merged-chr4-35225205-4	chr4	35224698	35225698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081343, intron 1 of 10)	intron (NM_001081343, intron 1 of 10)	682.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171390312-4	chr1	171389772	171390772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005508, intron 1 of 11)	intron (NM_001005508, intron 1 of 11)	1312.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	141.0	363.5	247.0	135.5	381.5	205.5
Merged-chr4-125055472-4	chr4	125054953	125055953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145552)	TTS (NM_145552)	10204.0	NM_175223	75563.0	Mm.50304	NM_175223	ENSMUSG00000042707	Dnali1	1700023A09Rik|AW049135	dynein, axonemal, light intermediate polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-4376377-4	chr9	4375876	4376876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145609)	promoter-TSS (NM_145609)	-176.0	NM_145609	78100.0	Mm.206549	NM_145609	ENSMUSG00000041124	Msantd4	8430410K20Rik|Mysantd4	Myb/SANT-like DNA-binding domain containing 4 with coiled-coils	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63989448-4	chr9	63988967	63989967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	32592.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4147328-4	chr19	4146835	4147835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1328.0	NM_011778	23789.0	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	7.5	50.5	47.5	7.5	51.0	45.0
Merged-chr7-78783018-4	chr7	78782504	78783504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026498)	promoter-TSS (NM_026498)	85.0	NM_023331	67308.0	Mm.193181	NM_023331	ENSMUSG00000030612	Mrpl46	3110052F15Rik|C15orf4|C80107|LIECG2|P2ECSL	mitochondrial ribosomal protein L46	protein-coding	2.0	7.0	2.0	1.5	8.0	3.5
Merged-chr15-50697919-4	chr15	50697408	50698408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	191141.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	9.0	6.5	6.5	24.5	15.5	12.5
Merged-chr7-43671895-4	chr7	43671388	43672388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145582)	promoter-TSS (NM_145582)	-143.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-28616814-4	chr13	28616326	28617326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045054, intron 5 of 7)	intron (NR_045054, intron 5 of 7)	94047.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80198436-4	chr7	80197946	80198946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360135)	promoter-TSS (NM_001360135)	5.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	11.5	37.0	21.5	11.5	36.5	23.0
Merged-chr14-51063501-4	chr14	51062988	51063988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6246.0	NM_001011875	497106.0	Mm.379740	NM_001011875	ENSMUSG00000068407	Rnase12	Rai1	ribonuclease, RNase A family, 12 (non-active)	protein-coding	44.5	79.5	54.0	53.0	107.0	65.5
Merged-chr17-33629089-1	chr17	33628589	33629589	+	1000.0	f0_c57.idr	promoter-TSS (NM_026712)	promoter-TSS (NM_026712)	-3.0	NR_034153	328801.0	Mm.181488	NM_026712	ENSMUSG00000073423	Zfp414	0610030H11Rik|Znf414	zinc finger protein 414	protein-coding	32.5	63.0	52.0	34.5	103.5	59.5
Merged-chr12-111675290-4	chr12	111674769	111675769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2836.0	NM_001099792	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112941976-4	chr12	112941429	112942429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316724, intron 1 of 4)	CpG	213.0	NM_025399	66174.0	Mm.7070	NM_025399	ENSMUSG00000002804	Nudt14	1110030M18Rik|UGPPase	nudix (nucleoside diphosphate linked moiety X)-type motif 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78425707-4	chr10	78425212	78426212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007793)	promoter-TSS (NM_007793)	42.0	NM_007793	13014.0	Mm.6095	NM_007793	ENSMUSG00000005054	Cstb	AA960480|Stfb	cystatin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69666748-2	chr11	69666248	69667248	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291058)	promoter-TSS (NM_001291058)	-578.0	NR_110993	12514.0	Mm.15819	NM_009853	ENSMUSG00000018774	Cd68	Lamp4|Scard1|gp110	CD68 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5012816-4	chr2	5012309	5013309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305259)	promoter-TSS (NM_001305259)	-18.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	10.0	25.0	10.5	5.0	5.0	9.5
Merged-chr8-121652993-4	chr8	121652504	121653504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-14599	-1071.0	NM_080855	142682.0	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-84880320-4	chr11	84879815	84880815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025414)	promoter-TSS (NM_025414)	-30.0	NM_001077636	70325.0	Mm.390414	NM_027388	ENSMUSG00000045140	Pigw	2610044A17Rik|Gwt1	phosphatidylinositol glycan anchor biosynthesis, class W	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91647784-4	chr16	91647292	91648292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178880)	promoter-TSS (NM_178880)	-32.0	NM_019973	20658.0	Mm.46401	NM_019973	ENSMUSG00000022961	Son	2900011L12Rik|AA409051|AU067731|C81487|mKIAA1019|nrebp	Son DNA binding protein	protein-coding	11.0	57.0	49.5	13.0	49.0	54.5
Merged-chr7-19629497-4	chr7	19628948	19629948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009046)	promoter-TSS (NM_009046)	-10.0	NM_009046	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113379495-4	chr6	113379012	113380012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170485, intron 1 of 3)	intron (NM_001170485, intron 1 of 3)	1399.0	NM_001170486	68089.0	Mm.289306	NM_026552	ENSMUSG00000079426	Arpc4	20kDa|5330419I20Rik|AI327076|p20-Arc	actin related protein 2/3 complex, subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-12419486-4	chr2	12418988	12419988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_149732)	promoter-TSS (NR_149732)	-28.0	NR_149731	66960.0	Mm.34059	NM_024185	ENSMUSG00000026767	Mindy3	1810041E18Rik|2310047O13Rik|5830410F13Rik|AI447827|AW111958|Fam188a	MINDY lysine 48 deubiquitinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106893204-3	chr8	106892684	106893684	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011574)	promoter-TSS (NM_011574)	409.0	NM_145412	214987.0	Mm.490308	NM_145412	ENSMUSG00000046691	Chtf8	5830457O10Rik|Ctf8|Derpc	CTF8, chromosome transmission fidelity factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90272738-4	chr9	90272252	90273252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1983.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	156.5	383.0	208.0	57.5	244.5	154.5
Merged-chr2-24355565-4	chr2	24355071	24356071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10200.0	NM_001039701	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32389417-4	chr17	32388907	32389907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033525)	promoter-TSS (NR_033525)	32.0	NR_033525	22404.0	Mm.274948	NM_011717	ENSMUSG00000024050	Wiz	-	widely-interspaced zinc finger motifs	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119429529-4	chr13	119428994	119429994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145457, intron 1 of 10)	CpG	592.0	NM_145457	218693.0	Mm.490243	NM_145457	ENSMUSG00000025451	Paip1	PAIP-1	polyadenylate binding protein-interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37106436-4	chr10	37105942	37106942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32484.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14890102-4	chr8	14889609	14890609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012000, intron 1 of 2)	intron (NM_012000, intron 1 of 2)	1573.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	65.5	159.0	96.5	44.5	138.0	113.0
Merged-chr3-108017509-4	chr3	108016970	108017970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010358, intron 1 of 7)	intron (NM_010358, intron 1 of 7)	503.0	NM_010358	14862.0	Mm.37199	NM_010358	ENSMUSG00000058135	Gstm1	Gstb-1|Gstb1	glutathione S-transferase, mu 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117545754-4	chr4	117545265	117546265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-4559.0	NM_001356404	140546.0	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	1.0	37.0	10.5	1.5	14.0	12.0
Merged-chr6-113333264-4	chr6	113332775	113333775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133926)	TTS (NM_133926)	6299.0	NM_010957	18294.0	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3283164-4	chr12	3282670	3283670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 1 of 5)	intron (NM_016676, intron 1 of 5)	26799.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73222723-4	chr14	73222220	73223220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 17 of 26)	intron (NM_009029, intron 17 of 26)	-15171.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100837429-4	chr12	100836920	100837920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145448, intron 3 of 12)	ORR1F|LTR|ERVL-MaLR	58363.0	NM_145448	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	1.0	2.5	2.0	7.0	9.0	4.5
Merged-chr9-44135967-2	chr9	44135467	44136467	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359530, intron 1 of 14)	intron (NM_001359530, intron 1 of 14)	1309.0	NM_001359530	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80386683-4	chr7	80386175	80387175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010194, intron 3 of 18)	intron (NM_010194, intron 3 of 18)	1271.0	NM_010194	14159.0	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	20.5	67.5	28.0	10.0	41.0	30.0
Merged-chr4-132040826-2	chr4	132040326	132041326	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	RSINE1|SINE|B4	8252.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-50382953-3	chr3	50382467	50383467	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011990, intron 7 of 11)	intron (NM_011990, intron 7 of 11)	60646.0	NM_011990	26570.0	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.0	6.5	2.5	11.0	7.5	5.5
Merged-chr6-108445216-4	chr6	108444721	108445721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-44522.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43654702-4	chr7	43654211	43655211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031181, intron 6 of 6)	intron (NM_031181, intron 6 of 6)	5450.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30625164-4	chr14	30624750	30625750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	958.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	15.0	77.5	72.5	21.5	92.0	63.0
Merged-chr4-132884479-4	chr4	132883982	132884982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133887)	promoter-TSS (NM_133887)	-24.0	NM_133887	100226.0	Mm.28237	NM_133887	ENSMUSG00000028879	Stx12	AI850350|AU041521|Stx13	syntaxin 12	protein-coding	65.5	255.0	174.0	92.0	277.5	206.5
Merged-chr5-150673702-4	chr5	150673207	150674207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346503)	promoter-TSS (NM_001346503)	-120.0	NM_175310	100710.0	Mm.32959	NM_175310	ENSMUSG00000034021	Pds5b	AI646570|AS3|AW212954|Aprin|Tg(Wap-ERBB2)229Wzw|WAP-Her-2|mKIAA0979	PDS5 cohesin associated factor B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108936683-4	chr9	108936177	108937177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025407)	promoter-TSS (NM_025407)	29.0	NM_025407	22273.0	Mm.335460	NM_025407	ENSMUSG00000025651	Uqcrc1	1110032G10Rik	ubiquinol-cytochrome c reductase core protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-40790680-4	chr1	40790181	40791181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172499)	promoter-TSS (NM_172499)	-24.0	NM_172499	211798.0	Mm.235443	NM_172499	ENSMUSG00000041945	Mfsd9	4931419K03Rik	major facilitator superfamily domain containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101905817-4	chr7	101905333	101906333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025605)	promoter-TSS (NM_025605)	-4.0	NM_025605	66508.0	Mm.30003	NM_025605	ENSMUSG00000030842	Lamtor1	2400001E08Rik|Pdro|p18	late endosomal/lysosomal adaptor, MAPK and MTOR activator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-66443011-2	chr8	66442511	66443511	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 6 of 7)	intron (NM_175188, intron 6 of 7)	43519.0	NM_025465	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-47275187-4	chr4	47274719	47275719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 14 of 39)	intron (NM_009928, intron 14 of 39)	67207.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73604326-2	chr13	73603826	73604826	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_146047, exon 1 of 17)	exon (NM_146047, exon 1 of 17)	324.0	NM_146047	218335.0	Mm.30099	NM_146047	ENSMUSG00000021610	Clptm1l	C130052I12Rik|Crr9	CLPTM1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65802445-4	chr18	65801921	65802921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025468, intron 1 of 5)	intron (NM_025468, intron 1 of 5)	1843.0	NM_025468	66286.0	Mm.27800	NM_025468	ENSMUSG00000024516	Sec11c	1810029G24Rik|Sec11l3	SEC11 homolog C, signal peptidase complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-123289911-4	chr6	123289417	123290417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019948)	promoter-TSS (NM_019948)	-46.0	NM_019948	56619.0	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130919890-4	chr4	130919380	130920380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	6546.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-41374775-4	chr8	41374281	41375281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019734)	promoter-TSS (NM_019734)	-84.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	98.0	229.5	177.0	108.0	289.5	151.5
Merged-chr3-38143303-4	chr3	38142785	38143785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64834.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6242480-4	chr19	6241970	6242970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194348, intron 1 of 39)	intron (NM_194348, intron 1 of 39)	802.0	NM_194348	329015.0	Mm.277384	NM_194348	ENSMUSG00000024773	Atg2a	1810013C15Rik|A830054M12|BC023754|mKIAA0404	autophagy related 2A	protein-coding	60.0	134.5	87.5	41.0	145.0	74.5
Merged-chr2-13413708-4	chr2	13413191	13414191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081084, intron 27 of 66)	intron (NM_001081084, intron 27 of 66)	78185.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88224662-3	chr1	88224164	88225164	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3A1|LTR|ERVK	-2356.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124623184-4	chr5	124622738	124623738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026486, intron 14 of 18)	intron (NM_026486, intron 14 of 18)	-5814.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-164307570-4	chr1	164307062	164308062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293313)	promoter-TSS (NM_001293313)	-75.0	NM_001357052	66352.0	Mm.33285	NM_025505	ENSMUSG00000026577	Blzf1	1700030G05Rik|Blzf1l|Golgin-45|Jem-1	basic leucine zipper nuclear factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77967064-4	chr18	77966565	77967565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195633, intron 12 of 43)	intron (NM_001195633, intron 12 of 43)	28598.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111431599-2	chr12	111431099	111432099	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028807)	TTS (NM_028807)	-11062.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55023233-4	chr11	55022736	55023736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 1 of 24)	intron (NR_138556, intron 1 of 24)	10235.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110991750-4	chr12	110991230	110992230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2668.0	NR_036598	77878.0	Mm.293198	NR_036598	ENSMUSG00000113056	6030440G07Rik	-	RIKEN cDNA 6030440G07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76767800-4	chr16	76767320	76768320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155453, intron 1 of 3)	intron (NR_155453, intron 1 of 3)	11272.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68241205-4	chr10	68240711	68241711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 3 of 9)	intron (NM_023598, intron 3 of 9)	37515.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	42.5	58.0	71.5	31.5	103.5	55.0
Merged-chr8-129263627-4	chr8	129263141	129264141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_144501)	promoter-TSS (NR_144501)	11.0	NR_144501	102635552.0		NM_001346808		Gm32856	-	predicted gene, 32856	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69966230-2	chr11	69965730	69966730	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001193619, intron 2 of 4)	CpG	809.0	NM_016887	53624.0	Mm.281896	NM_016887	ENSMUSG00000018569	Cldn7	-	claudin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-52019701-6	chr14	52019282	52020282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253694)	promoter-TSS (NM_001253694)	-69.0	NM_001253694	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	24.0	116.5	85.0	29.5	124.0	72.5
Merged-chr14-52197324-4	chr14	52196816	52197816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033618)	promoter-TSS (NM_033618)	-77.0	NM_033618	114741.0	Mm.21662	NM_033618	ENSMUSG00000035726	Supt16	Cdc68|Fact140|Spt16|Supt16h	suppressor of Ty 16	protein-coding	11.0	41.5	34.0	31.0	52.5	41.5
Merged-chr3-116508160-4	chr3	116507649	116508649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025517)	promoter-TSS (NM_025517)	26.0	NM_025517	66368.0	Mm.251228	NM_025517	ENSMUSG00000000339	Rtca	2310009A18Rik|AI450277|RPC|Rtcd1	RNA 3'-terminal phosphate cyclase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155091502-4	chr1	155091010	155092010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8126.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17796258-4	chr10	17795754	17796754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138628)	promoter-TSS (NM_138628)	35.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96489239-3	chr3	96488724	96489724	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35961.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122900422-4	chr5	122899929	122900929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013910)	promoter-TSS (NM_013910)	-79.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	4.0	9.5	14.0	3.5	15.0	10.0
Merged-chr10-28323214-4	chr10	28322718	28323718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359356, intron 3 of 30)	intron (NM_001359356, intron 3 of 30)	248398.0	NM_001359356	19272.0	Mm.332303	NM_008983	ENSMUSG00000019889	Ptprk	AI853699|PTPk|RPTPkappa	protein tyrosine phosphatase, receptor type, K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7873785-2	chr9	7873285	7874285	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007464)	promoter-TSS (NM_007464)	-615.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-19968475-4	chr14	19967989	19968989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285908, intron 1 of 3)	intron (NM_001285908, intron 1 of 3)	8204.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78880386-2	chr15	78879938	78880938	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145929, intron 1 of 16)	intron (NM_145929, intron 1 of 16)	3248.0	NM_145929	106039.0	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	9.5	7.0	9.5	5.0	6.0	15.5
Merged-chr9-107968260-4	chr9	107967786	107968786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011634, intron 10 of 14)	intron (NM_011634, intron 10 of 14)	-7281.0	NM_023738	74153.0	Mm.277125	NM_023738	ENSMUSG00000032596	Uba7	1300004C08Rik|Ube1l	ubiquitin-like modifier activating enzyme 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26963520-4	chr8	26963020	26964020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13816.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141540859-4	chr7	141540336	141541336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142681)	promoter-TSS (NM_001142681)	-979.0	NM_001142681	68038.0	Mm.245355	NM_026522	ENSMUSG00000025512	Chid1	3110023E09Rik|AI841869	chitinase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46140020-4	chr17	46139519	46140519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029338, intron 2 of 4)	intron (NM_029338, intron 2 of 4)	4179.0	NM_029338	75564.0	Mm.17993	NM_029338	ENSMUSG00000023966	Rsph9	1700027N10Rik	radial spoke head 9 homolog (Chlamydomonas)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6335598-2	chr19	6335098	6336098	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001168488, exon 2 of 10)	exon (NM_001168488, exon 2 of 10)	559.0	NM_008583	17283.0	Mm.12917	NM_008583	ENSMUSG00000024947	Men1	AW045611	multiple endocrine neoplasia 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156036501-4	chr1	156035997	156036997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160018)	promoter-TSS (NM_001160018)	-17.0	NM_001160018	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	317.0	758.5	555.5	365.5	614.5	540.5
Merged-chr11-6444628-4	chr11	6444130	6445130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347064)	promoter-TSS (NM_001347064)	-187.0	NM_001347064	77605.0	Mm.27624	NM_029938	ENSMUSG00000041126	H2afv	C530002L11Rik|H2a.z-2|H2av|Tg(Wnt1-cre)11Rth|Wnt1-Cre|Wnt1::Cre|Wnt1cre	H2A histone family, member V	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113908188-4	chr5	113907739	113908739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011779, intron 1 of 10)	CpG	467.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	6.0	72.5	33.0	18.5	75.5	47.0
Merged-chr9-7868208-4	chr9	7867710	7868710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007464, intron 1 of 8)	intron (NM_007464, intron 1 of 8)	4960.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-107513656-4	chr1	107513156	107514156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011111, intron 1 of 7)	intron (NM_011111, intron 1 of 7)	2146.0	NM_011111	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99973206-1	chr15	99972706	99973706	+	1000.0	f0_balb.idr	promoter-TSS (NR_028124)	promoter-TSS (NR_028124)	81.0	NR_028124	70281.0	Mm.484037	NR_028124	ENSMUSG00000100084	2310068J16Rik	-	RIKEN cDNA 2310068J16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-72966259-2	chr17	72965759	72966759	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47954.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36631776-4	chr16	36631287	36632287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	L1MB3|LINE|L1	34290.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95797368-4	chr15	95796874	95797874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	6531.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-86172872-4	chr5	86172355	86173355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172712)	promoter-TSS (NM_172712)	-112.0	NM_172712	231380.0	Mm.34012	NM_172712	ENSMUSG00000035898	Uba6	4930542H01|5730469D23Rik|AU021846|AW124799|E1-L2|Ube1l2	ubiquitin-like modifier activating enzyme 6	protein-coding	79.0	219.5	160.5	53.5	213.0	173.0
Merged-chr6-52640334-4	chr6	52639779	52640779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145567)	promoter-TSS (NM_145567)	21.0	NM_145567	58875.0	Mm.286458	NM_145567	ENSMUSG00000029776	Hibadh	6430402H10Rik|AI265272	3-hydroxyisobutyrate dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180404451-4	chr1	180403936	180404936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-73887.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-55353535-6	chr3	55353025	55354025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357475, intron 3 of 16)	intron (NM_001357475, intron 3 of 16)	-108203.0	NM_001195539	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51451743-4	chr10	51451247	51452247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28865.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6579857-4	chr15	6579362	6580362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001278269)	promoter-TSS (NM_001278269)	15.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-53374369-4	chr10	53373871	53374871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204983, intron 1 of 12)	L2a|LINE|L2	5480.0	NM_001204983	100038725.0	Mm.441403	NM_001204983	ENSMUSG00000038594	Cep85l	Gm9766	centrosomal protein 85-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-71831003-4	chr12	71830514	71831514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172464)	promoter-TSS (NM_172464)	-54.0	NM_026102	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-74963428-2	chr14	74962928	74963928	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11658.0	NR_046078	100043169.0	Mm.145900	NR_046078	ENSMUSG00000115019	Gm4278	-	predicted gene 4278	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149790843-4	chr4	149790359	149791359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-16592.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108566954-4	chr9	108566454	108567454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_023247, exon 1 of 5)	5' UTR (NM_023247, exon 1 of 5)	388.0	NM_023247	66706.0	Mm.29471	NM_023247	ENSMUSG00000070283	Ndufaf3	4733401H18Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3	protein-coding	13.5	26.5	17.5	18.5	50.0	30.0
Merged-chr10-117953112-4	chr10	117952608	117953608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27649.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100433009-2	chr7	100432500	100433500	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 23 of 32)	intron (NM_001017985, intron 23 of 32)	-39991.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	11.0	28.0	9.0	6.5	25.5	24.0
Merged-chr11-49202808-4	chr11	49202289	49203289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009562)	promoter-TSS (NM_009562)	-711.0	NM_001024846	22720.0	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46470859-4	chr8	46470357	46471357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007981)	promoter-TSS (NM_007981)	-180.0	NM_007981	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79228190-4	chr2	79227700	79228700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27226.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-59210931-4	chr3	59210410	59211410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028808)	promoter-TSS (NM_028808)	-28.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95106163-4	chr4	95105665	95106665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53943.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	17.5	5.5	7.5	0.0	17.5	7.0
Merged-chr11-120630641-4	chr11	120630140	120631140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010756, intron 1 of 2)	intron (NM_010756, intron 1 of 2)	2907.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-79816200-2	chr9	79815700	79816700	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357352, intron 5 of 5)	intron (NM_001357352, intron 5 of 5)	14782.0	NM_001357354	70598.0	Mm.23049	NM_001081243	ENSMUSG00000034898	Filip1	5730485H21Rik|AI843021	filamin A interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-88204342-4	chr11	88203842	88204842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_111902)	promoter-TSS (NR_111902)	-46.0	NM_024174	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	62.0	284.0	191.5	119.5	278.0	272.0
Merged-chr9-57144975-2	chr9	57144475	57145475	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357409, exon 5 of 11)	exon (NM_001357409, exon 5 of 11)	3330.0	NM_028347	72774.0	Mm.35749	NM_028347	ENSMUSG00000032298	Neil1	2810450N13Rik|NEH1|Nei1	nei endonuclease VIII-like 1 (E. coli)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-99029054-4	chr13	99028554	99029554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44489.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98266353-4	chr12	98265845	98266845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2290.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58540256-2	chr13	58539756	58540756	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70621.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82906192-4	chr15	82905694	82906694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045068)	TTS (NR_045068)	5940.0	NM_013836	21411.0	Mm.252156	NM_013836	ENSMUSG00000041852	Tcf20	2810438H08Rik|SPBP|mKIAA0292	transcription factor 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127326202-2	chr10	127325702	127326702	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359657, intron 2 of 11)	intron (NM_001359657, intron 2 of 11)	560.0	NM_001359657	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	0.0	2.0	5.5	1.5	2.5	0.5
Merged-chr17-27028602-4	chr17	27028099	27029099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007523)	promoter-TSS (NM_007523)	28.0	NM_007523	12018.0	Mm.2443	NM_007523	ENSMUSG00000057789	Bak1	Bak|N-BAK1|N-Bak	BCL2-antagonist/killer 1	protein-coding	28.5	41.5	48.0	27.0	70.5	39.0
Merged-chr11-118981167-4	chr11	118980589	118981589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7092.0	NM_001359574	238011.0	Mm.244114	NM_001030291	ENSMUSG00000046697	Enpp7	Alk-SMase|Gm254	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113677571-4	chr6	113677069	113678069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 7 of 11)	intron (NM_001113553, intron 7 of 11)	-19481.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-58070274-2	chr14	58069774	58070774	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2412.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-73233628-4	chr8	73233118	73234118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010687, intron 1 of 14)	B4|SINE|B4	119922.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129058165-3	chr2	129057663	129058663	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7784.0	NM_027192	69737.0	Mm.33909	NM_027192	ENSMUSG00000027394	Ttl	2410003M22Rik|2700049H19Rik|AI848570	tubulin tyrosine ligase	protein-coding	1.5	0.0	0.0	8.0	0.0	6.0
Merged-chr9-108808378-4	chr9	108807921	108808921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030729)	promoter-TSS (NM_030729)	41.0	NM_030729	80987.0	Mm.192416	NM_030729	ENSMUSG00000032598	Nckipsd	AF3P21|DIP1|ORF1|SPIN90|WASLBP|WISH|Wasbp	NCK interacting protein with SH3 domain	protein-coding	7.0	7.0	26.0	9.0	33.0	24.5
Merged-chr2-117120721-6	chr2	117120197	117121197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033524)	promoter-TSS (NM_033524)	-374.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-68180467-2	chr18	68179967	68180967	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	MTC|LTR|ERVL-MaLR	-47479.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	2.0	5.0	2.0	7.5	7.0	13.5
Merged-chr2-181678973-4	chr2	181678482	181679482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1315.0	NM_001356343	21400.0	Mm.24245	NM_009326	ENSMUSG00000059540	Tcea2	AI326274|S-II-T1|SII-T1|Tceat	transcription elongation factor A (SII), 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73950280-4	chr17	73949783	73950783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011723)	promoter-TSS (NM_011723)	-87.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	10.0	5.5	7.0	6.0	16.5	17.5
Merged-chr9-54501241-2	chr9	54500741	54501741	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172771, intron 1 of 43)	CpG	385.0	NM_172771	235380.0	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27202945-4	chr3	27202459	27203459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	19955.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94238458-2	chr16	94237958	94238958	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 5 of 10)	intron (NM_001360045, intron 5 of 10)	51833.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135735879-4	chr7	135735413	135736413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19534.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120514441-4	chr5	120513907	120514907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 2 of 13)	intron (NM_001177595, intron 2 of 13)	3215.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5929752-4	chr19	5929227	5930227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4911.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-83987902-4	chr12	83987427	83988427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134188)	promoter-TSS (NM_134188)	66.0	NM_134188	171210.0	Mm.371675	NM_134188	ENSMUSG00000021226	Acot2	AA571646|MTE-I|Mte1	acyl-CoA thioesterase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80692388-4	chr10	80691911	80692911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	ID_B1|SINE|B4	9409.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32857649-4	chr18	32857176	32858176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110015, intron 16 of 22)	intron (NM_001110015, intron 16 of 22)	-20389.0	NR_045381	75795.0	Mm.382634	NR_045381	ENSMUSG00000097553	4930455D15Rik	-	RIKEN cDNA 4930455D15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16934054-2	chr7	16933554	16934554	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-10022.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25745186-4	chr8	25744693	25745693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361595, intron 7 of 15)	intron (NM_001361595, intron 7 of 15)	9087.0	NM_028102	72108.0	Mm.246875	NM_028102	ENSMUSG00000061313	Ddhd2	2010305K11Rik|SAMWD1|mKIAA0725	DDHD domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32756287-7	chr19	32755811	32756811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1266.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-25058227-4	chr16	25057726	25058726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1413.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75054864-4	chr11	75054364	75055364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 13 of 18)	intron (NM_001002764, intron 13 of 18)	11127.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124738665-4	chr6	124738165	124739165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077705)	promoter-TSS (NM_001077705)	44.0	NM_001077705	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88898747-4	chr6	88898249	88899249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008564)	promoter-TSS (NM_008564)	31.0	NM_008564	17216.0	Mm.16711	NM_008564	ENSMUSG00000002870	Mcm2	AA959861|AW476101|BM28|CDCL1|Mcmd2|mKIAA0030	minichromosome maintenance complex component 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97464355-4	chr6	97463830	97464830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-5044.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	199.0	517.0	232.5	124.0	318.0	213.0
Merged-chr2-160621583-5	chr2	160621004	160622004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24393.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24933914-4	chr16	24933414	24934414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-125725.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-46985934-4	chr7	46985454	46986454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033461, intron 3 of 4)	(TG)n|Simple_repeat|Simple_repeat	9322.0	NR_033461	629141.0	Mm.229259	NR_033461	ENSMUSG00000056509	Gm9999	-	predicted gene 9999	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-49453004-4	chr2	49452520	49453520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172663, intron 1 of 13)	intron (NM_172663, intron 1 of 13)	1534.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-24664281-4	chr6	24663781	24664781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028459, intron 1 of 10)	intron (NM_028459, intron 1 of 10)	714.0	NM_001167745	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32485907-4	chr19	32485402	32486402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010799, exon 1 of 5)	5' UTR (NM_010799, exon 1 of 5)	133.0	NM_010799	17330.0	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27379553-4	chr14	27379047	27380047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 3 of 10)	intron (NM_027871, intron 3 of 10)	18158.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	50.5	109.0	63.5	37.0	119.0	118.5
Merged-chr11-53796957-4	chr11	53796455	53797455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	26482.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137862214-4	chr4	137861728	137862728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199307)	promoter-TSS (NM_199307)	-9.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	29.5	33.5	26.0	33.0	53.5	39.5
Merged-chr3-88503463-7	chr3	88502976	88503976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111102)	promoter-TSS (NM_001111102)	-124.0	NM_001002011	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67828620-4	chr5	67828133	67829133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	MLT1A|LTR|ERVL-MaLR	18798.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100614627-4	chr15	100614113	100615113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045701, exon 2 of 2)	non-coding (NR_045701, exon 2 of 2)	497.0	NR_045701	78445.0	Mm.44383	NR_045701	ENSMUSG00000097093	C330013E15Rik	-	RIKEN cDNA C330013E15 gene	ncRNA	138.5	370.5	243.5	114.0	352.5	202.5
Merged-chr6-39227948-2	chr6	39227448	39228448	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-21175.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152810003-4	chr1	152809496	152810496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 2 of 15)	intron (NM_010877, intron 2 of 15)	9843.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45472250-4	chr4	45471759	45472759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 2 of 5)	intron (NM_001033306, intron 2 of 5)	58569.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	24.5	84.0	63.0	30.5	78.5	89.5
Merged-chr3-103212379-4	chr3	103211904	103212904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30D2_MM|LTR|ERV1	40749.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	6.0	8.5	11.5	11.5	1.5	1.0
Merged-chr2-167271720-2	chr2	167271220	167272220	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31183.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65460872-4	chr9	65460366	65461366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138584)	promoter-TSS (NM_138584)	-71.0	NM_138584	27965.0	Mm.272475	NM_138584	ENSMUSG00000032388	Spg21	ACP33|BM-019|C78576|D9Wsu18e|GL010|MAST	SPG21, maspardin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103719035-4	chr14	103718541	103719541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19609.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3791971-4	chr12	3791496	3792496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14984.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94849560-4	chr13	94849042	94850042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26085.0	NM_011021	18420.0	Mm.42051	NM_011021	ENSMUSG00000021685	Otp	-	orthopedia homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68725578-4	chr10	68725086	68726086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	1840.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120454845-4	chr6	120454342	120455342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	-8355.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	19.0	26.0	42.0	29.0	42.0	50.5
Merged-chr4-145231929-4	chr4	145231421	145232421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	14949.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116000345-1	chr11	115999845	116000845	+	1000.0	f1_balb.idr	exon (NM_133663, exon 29 of 39)	exon (NM_133663, exon 29 of 39)	-6630.0	NR_152190	100038636.0	Mm.450138	NR_152190		B230344G16Rik	-	RIKEN cDNA B230344G16 gene	ncRNA	0.0	0.0	5.5	0.0	10.5	1.0
Merged-chr10-42761505-4	chr10	42760989	42761989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153055)	promoter-TSS (NM_153055)	-7.0	NM_001359283	140740.0	Mm.214344	NM_153055	ENSMUSG00000019802	Sec63	5730478J10Rik|AI649014|AW319215	SEC63-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3310051-4	chr12	3309546	3310546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016676)	promoter-TSS (NM_016676)	-77.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-162932042-4	chr2	162931507	162932507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026499, exon 2 of 6)	exon (NM_026499, exon 2 of 6)	499.0	NM_026499	67996.0	Mm.24042	NM_026499	ENSMUSG00000016921	Srsf6	1210001E11Rik|AI314910|AW146126|Sfrs6	serine/arginine-rich splicing factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28169917-8	chr7	28169441	28170441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007991, intron 1 of 8)	CpG	193.0	NM_007991	14113.0	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70064046-2	chr14	70063546	70064546	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13399.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-71832340-3	chr7	71831840	71832840	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77355.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	3.5	0.0	0.0	2.0	2.0	0.0
Merged-chr1-60566859-4	chr1	60566360	60567360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045513)	promoter-TSS (NM_001045513)	-95.0	NM_001045513	77300.0	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171234399-4	chr1	171233899	171234899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010185)	promoter-TSS (NM_010185)	-50.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	68.0	138.0	93.5	46.5	98.5	92.0
Merged-chr6-120038549-7	chr6	120038020	120039020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001199083, exon 1 of 28)	5' UTR (NM_001199083, exon 1 of 28)	135.0	NM_001185020	232341.0	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-16183280-4	chr2	16182777	16183777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310455, intron 35 of 38)	MER44D|DNA|TcMar-Tigger	-173027.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-25100851-4	chr5	25100351	25101351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027851)	promoter-TSS (NR_027851)	-124.0	NR_027851	67261.0	Mm.461781	NM_026059	ENSMUSG00000043833	2900005J15Rik	-	RIKEN cDNA 2900005J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58302416-8	chr11	58301931	58302931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4638.0	NM_182996	103836.0	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	121.0	299.5	172.0	82.0	166.0	90.0
Merged-chr6-108558069-2	chr6	108557569	108558569	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	65098.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0.0	0.0	4.5	5.5	4.5	2.0
Merged-chr12-55836775-4	chr12	55836277	55837277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155205, intron 1 of 10)	CpG	411.0	NR_155205	52592.0	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90881122-2	chr5	90880622	90881622	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10123.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0.0	1.0	0.0	0.0	1.0	0.0
Merged-chr5-34761692-4	chr5	34761203	34762203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010414)	promoter-TSS (NM_010414)	-37.0	NM_010414	15194.0	Mm.209071	NM_010414	ENSMUSG00000029104	Htt	AI256365|C430023I11Rik|Hd|Hdh|IT15	huntingtin	protein-coding	0.0	18.5	10.5	9.0	11.0	1.5
Merged-chr3-19628746-4	chr3	19628238	19629238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15722.0	NM_001081281	381485.0	Mm.35419	NM_001081281	ENSMUSG00000060913	Trim55	D830041C10Rik|Murf2|Rnf29	tripartite motif-containing 55	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96237043-2	chr3	96236543	96237543	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2084.0	NM_054045	97114.0	Mm.358797	NM_054045	ENSMUSG00000081058	Hist2h3c2	H3-614|H3.2-614|Hist2h3c2-ps|Hist2h3ca1|M32461	histone cluster 2, H3c2	protein-coding	4.0	2.0	2.5	4.0	2.0	1.5
Merged-chr5-137533197-4	chr5	137532684	137533684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010312, exon 1 of 10)	5' UTR (NM_010312, exon 1 of 10)	122.0	NM_010312	14693.0	Mm.30141	NM_010312	ENSMUSG00000029713	Gnb2	Gnb-2	guanine nucleotide binding protein (G protein), beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62217447-4	chr10	62216944	62217944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 1 of 7)	intron (NM_197996, intron 1 of 7)	13774.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-72441290-4	chr11	72440807	72441807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016776)	promoter-TSS (NM_016776)	-20.0	NM_016776	18432.0	Mm.147946	NM_016776	ENSMUSG00000040463	Mybbp1a	AL024407|AU019902|P160|p160MBP|p67MBP	MYB binding protein (P160) 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138619751-4	chr5	138619264	138620264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001044747)	promoter-TSS (NM_001044747)	-21.0	NM_001044747	24135.0	Mm.27575	NM_013844	ENSMUSG00000058291	Zfp68	KRAB3|KRAZ2|Zfp70|mszf22|mszf49	zinc finger protein 68	protein-coding	55.0	211.5	145.0	64.0	176.0	125.5
Merged-chr2-157133906-4	chr2	157133405	157134405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139520, intron 1 of 16)	BC1_Mm|scRNA|scRNA	1317.0	NM_001139520	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21125729-5	chr9	21125259	21126259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205312, intron 3 of 24)	ID_B1|SINE|B4	5516.0	NM_018793	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44084857-4	chr9	44084368	44085368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198091)	promoter-TSS (NM_198091)	-52.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-85574039-4	chr3	85573544	85574544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144896)	promoter-TSS (NM_144896)	-85.0	NM_144896	229487.0	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-111864937-4	chr1	111864424	111865424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081316)	promoter-TSS (NM_001081316)	-6.0	NM_001081316	319901.0	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding	12.5	18.5	31.5	17.5	28.5	32.0
Merged-chr17-24205584-4	chr17	24205086	24206086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173186)	promoter-TSS (NM_173186)	-24.0	NM_001163850	224617.0	Mm.301585	NM_173186	ENSMUSG00000036473	Tbc1d24	9630033P11|C530046L02Rik|mKIAA1171	TBC1 domain family, member 24	protein-coding	10.5	79.0	46.5	27.0	43.5	32.0
Merged-chr6-34878175-4	chr6	34877673	34878673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347101)	promoter-TSS (NM_001347101)	-108.0	NM_001135611	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88651377-4	chr8	88650873	88651873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 1 of 12)	MTB|LTR|ERVL-MaLR	4026.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	120.0	304.5	194.0	161.0	257.5	188.0
Merged-chr11-17008693-4	chr11	17008204	17009204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019549)	promoter-TSS (NM_019549)	14.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82534591-4	chr18	82534078	82535078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025245, intron 3 of 3)	intron (NM_001025245, intron 3 of 3)	-19885.0	NM_001025258	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64790844-4	chr9	64790343	64791343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-20168.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-117906779-4	chr6	117906289	117907289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166431)	promoter-TSS (NM_001166431)	7.0	NM_133834	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37364690-4	chr10	37364185	37365185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-225759.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145808528-4	chr2	145808029	145809029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	22413.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80571639-2	chr10	80571139	80572139	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_078477, intron 1 of 1)	intron (NM_078477, intron 1 of 1)	5657.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79141289-4	chr15	79140793	79141793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310579)	promoter-TSS (NM_001310579)	-32.0	NM_027231	69833.0	Mm.279861	NM_027231	ENSMUSG00000033020	Polr2f	1810060D16Rik|RPB6	polymerase (RNA) II (DNA directed) polypeptide F	protein-coding	16.0	21.0	34.0	10.0	21.0	14.0
Merged-chr9-78481766-4	chr9	78481313	78482313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010106)	promoter-TSS (NM_010106)	-89.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	144.5	250.0	192.5	139.0	246.5	195.5
Merged-chr19-32990802-4	chr19	32990303	32991303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-166309.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	2.0	21.5	18.5	2.0	21.5	17.0
Merged-chr3-108146159-4	chr3	108145707	108146707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010306)	promoter-TSS (NM_010306)	-55.0	NM_010306	14679.0	Mm.271703	NM_010306	ENSMUSG00000000001	Gnai3	AI158965|AW537698|Galphai3|Gnai-3	guanine nucleotide binding protein (G protein), alpha inhibiting 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83154596-2	chr15	83154096	83155096	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029787, exon 9 of 9)	exon (NM_029787, exon 9 of 9)	4951.0	NR_004432	104307.0	Mm.471434	NR_004432	ENSMUSG00000065176	Rnu12	-	RNA U12, small nuclear	snRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156719124-4	chr1	156718630	156719630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145413)	promoter-TSS (NM_145413)	-220.0	NM_145413	215015.0	Mm.229107	NM_145413	ENSMUSG00000033557	Fam20b	C530043G21Rik|mKIAA0475	family with sequence similarity 20, member B	protein-coding	12.0	17.0	10.5	4.0	13.5	10.0
Merged-chr11-3193184-4	chr11	3192800	3193800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 1 of 32)	CpG	163.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-13007766-4	chr18	13007262	13008262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153087, intron 1 of 2)	intron (NM_153087, intron 1 of 2)	772.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-16243308-4	chr14	16242812	16243812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359883)	promoter-TSS (NM_001359883)	19.0	NM_001359883	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	314.5	774.5	692.0	382.0	742.5	604.0
Merged-chr18-80690117-4	chr18	80689636	80690636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 2 of 9)	intron (NM_198429, intron 2 of 9)	18037.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	4.0	6.5	20.5	10.5	32.0	11.5
Merged-chr15-66950347-4	chr15	66949848	66950848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008681, intron 3 of 15)	intron (NM_008681, intron 3 of 15)	19293.0	NM_008681	17988.0	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	5.0	2.5	4.5	1.5	0.0	1.5
Merged-chr7-25247012-2	chr7	25246512	25247512	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010155, intron 1 of 3)	intron (NM_010155, intron 1 of 3)	3746.0	NM_010155	13875.0	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153122902-4	chr2	153122406	153123406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 1 of 12)	intron (NM_001172117, intron 1 of 12)	14438.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	0.0	0.0	2.0	0.0	0.0	2.0
Merged-chr18-75304666-4	chr18	75304171	75305171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7342.0	NR_045393	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31670685-4	chr2	31670182	31671182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144886)	promoter-TSS (NM_144886)	-33.0	NM_144886	227715.0	Mm.150972	NM_144886	ENSMUSG00000039356	Exosc2	Rrp4	exosome component 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38341847-4	chr16	38341351	38342351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081025)	promoter-TSS (NM_001081025)	9.0	NM_001081025	320214.0	Mm.294342	NM_177104	ENSMUSG00000022805	Maats1	4932425I24Rik|Aat1|CFAP91|Spata26	MYCBP-associated, testis expressed 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90208877-4	chr9	90208376	90209376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 11 of 12)	L1ME4b|LINE|L1	45898.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0.0	3.5	1.0	0.0	1.0	0.0
Merged-chr12-84802842-4	chr12	84802345	84803345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013589, intron 16 of 34)	intron (NM_013589, intron 16 of 34)	29575.0	NM_028863	74316.0	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-140702756-4	chr4	140702320	140703320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173867, intron 2 of 12)	CpG-10575	1347.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	0.0	5.5	3.5	0.0	10.5	5.5
Merged-chr15-25268586-4	chr15	25268080	25269080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	145184.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121796223-4	chr11	121795711	121796711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34007.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3157645-2	chr11	3157143	3158143	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 11 of 32)	intron (NM_030207, intron 11 of 32)	33622.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	2.5	0.0	0.5
Merged-chr1-191250194-4	chr1	191249672	191250672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25718.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	40.0	62.5	51.5	31.0	83.0	56.0
Merged-chr6-70844315-4	chr6	70843797	70844797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010121)	promoter-TSS (NM_010121)	-218.0	NM_010121	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-61441573-4	chr3	61441065	61442065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77058.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11804630-4	chr19	11804130	11805130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	14773.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-14864227-4	chr4	14863709	14864709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028264)	promoter-TSS (NM_028264)	-10.0	NM_028264	72519.0	Mm.279158	NM_028264	ENSMUSG00000028221	Tmem55a	2610319K07Rik|AI315591|AV001360|Pip4p2	transmembrane protein 55A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9020422-4	chr3	9019912	9020912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER89-int|LTR|ERV1	-15689.0	NM_001357075	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	82.0	111.0	118.5	39.5	67.5	79.5
Merged-chr2-152756696-4	chr2	152756190	152757190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053091, intron 2 of 4)	intron (NM_053091, intron 2 of 4)	2517.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146501598-4	chr6	146501045	146502045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 1 of 56)	intron (NM_019923, intron 1 of 56)	678.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	28.0	61.5	65.0	39.0	84.0	64.5
Merged-chr4-128984768-4	chr4	128984269	128985269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8455.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-31042196-4	chr7	31041677	31042677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111073)	promoter-TSS (NM_001111073)	154.0	NM_008761	18301.0	Mm.1870	NM_008761	ENSMUSG00000009687	Fxyd5	EF-8|Oit2|RIC	FXYD domain-containing ion transport regulator 5	protein-coding	46.5	19.0	36.0	25.5	34.0	17.5
Merged-chr1-36961032-4	chr1	36960515	36961515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21488.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-100162980-1	chr3	100162480	100163480	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_175552)	promoter-TSS (NM_175552)	517.0	NR_104341	14547.0	Mm.279228	NM_010269	ENSMUSG00000027865	Gdap2	C77050|D3Ertd801e	ganglioside-induced differentiation-associated-protein 2	protein-coding	93.5	179.0	158.0	60.5	143.5	147.0
Merged-chr2-117941887-2	chr2	117941387	117942387	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	119959.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-97851592-11	chr16	97851098	97852098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144789)	promoter-TSS (NM_144789)	252.0	NM_001359078	114604.0	Mm.328741	NM_144789	ENSMUSG00000014039	Prdm15	C21orf83|E130018M06Rik|ORF62|Zfp298	PR domain containing 15	protein-coding	0.0	4.0	4.0	7.5	8.5	4.5
Merged-chr13-45001609-4	chr13	45001058	45002058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025772, intron 1 of 9)	intron (NM_025772, intron 1 of 9)	538.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126830815-2	chr8	126830315	126831315	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18205.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84978629-6	chr8	84978089	84979089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008416, exon 1 of 1)	5' UTR (NM_008416, exon 1 of 1)	159.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	90.0	178.5	120.5	62.5	204.0	133.0
Merged-chr1-65178337-4	chr1	65177833	65178833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111320, intron 1 of 8)	intron (NM_001111320, intron 1 of 8)	809.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23710630-4	chr13	23710142	23711142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010424, exon 1 of 6)	exon (NM_010424, exon 1 of 6)	212.0	NM_001347493	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	67.0	191.0	143.0	78.5	156.0	125.0
Merged-chr11-51927390-4	chr11	51926876	51927876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40255.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-13683996-4	chr17	13683509	13684509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76532.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	0.5	4.0	1.5	0.0	5.0	2.0
Merged-chr14-61309778-4	chr14	61309284	61310284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177337)	promoter-TSS (NM_177337)	31.0	NM_177337	219144.0	Mm.206566	NM_177337	ENSMUSG00000043157	Arl11	ARLTS1|C730007L20Rik	ADP-ribosylation factor-like 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-55726400-4	chr17	55725889	55726889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13753.0	NR_151542	72836.0	Mm.177073	NM_028370	ENSMUSG00000024174	Pot1b	2810458H16Rik	protection of telomeres 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102980030-4	chr14	102979539	102980539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177715, exon 1 of 1)	3' UTR (NM_177715, exon 1 of 1)	2593.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-97340665-4	chr13	97340158	97341158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94312.0	NR_110432	100039691.0	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54417782-4	chr14	54417280	54418280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253679)	promoter-TSS (NM_001253679)	-78.0	NM_011405	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-15637483-4	chr16	15636991	15637991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011159)	promoter-TSS (NM_011159)	-91.0	NM_008565	17217.0	Mm.1500	NM_008565	ENSMUSG00000022673	Mcm4	19G|AI325074|AU045576|Cdc21|Mcmd4|mKIAA4003|mcdc21	minichromosome maintenance complex component 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80539216-4	chr10	80538702	80539702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026094)	promoter-TSS (NM_026094)	-78.0	NM_026094	67331.0	Mm.52511	NM_026094	ENSMUSG00000003341	Atp8b3	1700042F02Rik|1700056N23Rik|ATPIK|SAPLT	ATPase, class I, type 8B, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-76237496-4	chr18	76237007	76238007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-4194.0	NM_010754	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	19.5	47.5	46.0	12.5	45.5	39.0
Merged-chr11-70452250-4	chr11	70451756	70452756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025397, exon 2 of 3)	exon (NM_025397, exon 2 of 3)	325.0	NM_025397	66172.0	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	73.0	170.5	140.0	52.5	178.5	135.0
Merged-chr2-158498428-4	chr2	158497929	158498929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291138, exon 30 of 30)	3' UTR (NM_001291138, exon 30 of 30)	-4183.0	NM_145635	246747.0	Mm.28800	NM_145635	ENSMUSG00000044405	Adig	SMAF-1|Smaf1	adipogenin	protein-coding	40.5	76.5	74.0	43.0	60.0	66.5
Merged-chr3-62459415-2	chr3	62458915	62459915	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081295, intron 12 of 13)	intron (NM_001081295, intron 12 of 13)	47573.0	NM_028136	72162.0	Mm.224233	NM_028136	ENSMUSG00000027770	Dhx36	2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488	DEAH (Asp-Glu-Ala-His) box polypeptide 36	protein-coding	0.0	11.0	3.5	2.0	6.5	4.0
Merged-chr1-152540717-4	chr1	152540236	152541236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 9 of 17)	intron (NM_016846, intron 9 of 17)	84481.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39578098-2	chr1	39577598	39578598	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033135)	promoter-TSS (NM_001033135)	-751.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-129846971-4	chr5	129846469	129847469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026445)	promoter-TSS (NM_026445)	-21.0	NM_026445	67902.0	Mm.103546	NM_026445	ENSMUSG00000025538	Sumf2	2610040F05Rik	sulfatase modifying factor 2	protein-coding	13.5	11.5	6.5	6.5	15.0	15.5
Merged-chr11-21091178-4	chr11	21090691	21091691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023324)	promoter-TSS (NM_023324)	-133.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153914074-4	chr1	153913586	153914586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14157.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-37276092-4	chr17	37275587	37276587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	4331.0	NM_146515	258508.0	Mm.377544	NM_146515	ENSMUSG00000061972	Olfr99	MOR156-1	olfactory receptor 99	protein-coding	7.5	31.0	26.5	8.5	15.0	13.5
Merged-chr10-61680259-4	chr10	61679782	61680782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358488)	promoter-TSS (NM_001358488)	-3.0	NM_001358488	20224.0	Mm.391794	NM_009120	ENSMUSG00000020088	Sar1a	1600019H17Rik|Sara|Sara1	secretion associated Ras related GTPase 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-81932658-4	chr3	81932156	81933156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177662)	promoter-TSS (NM_177662)	55.0	NM_177662	229445.0	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|AI118514	cathepsin O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45094244-2	chr7	45093744	45094744	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357117, intron 5 of 6)	B3A|SINE|B2	-2031.0	NM_001355045	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	0.5	4.0	1.0	6.5	3.0	9.0
Merged-chr17-24171944-4	chr17	24171437	24172437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2259.0	NM_001361531	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	224.0	580.5	532.5	170.5	497.0	346.0
Merged-chr8-22757584-4	chr8	22757096	22758096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008872)	promoter-TSS (NM_008872)	-126.0	NM_008872	18791.0	Mm.154660	NM_008872	ENSMUSG00000031538	Plat	AU020998|AW212668|D8Ertd2e|tPA	plasminogen activator, tissue	protein-coding	0.0	2.5	1.0	0.0	4.5	0.0
Merged-chr1-74392659-4	chr1	74392176	74393176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153088, intron 1 of 6)	intron (NM_153088, intron 1 of 6)	1067.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148140372-8	chr4	148139831	148140831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027985)	promoter-TSS (NM_027985)	-159.0	NM_027985	71890.0	Mm.9648	NM_027985	ENSMUSG00000029003	Mad2l2	2310033C13Rik|G1-453-4|MAD2B|REV7|repro22	MAD2 mitotic arrest deficient-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98677589-4	chr15	98677083	98678083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172612)	promoter-TSS (NM_172612)	-122.0	NM_172612	223881.0	Mm.274010	NM_172612	ENSMUSG00000054855	Rnd1	A830014L09Rik|Arhs	Rho family GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79547517-2	chr15	79547017	79548017	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199080)	promoter-TSS (NM_199080)	-776.0	NM_199080	67040.0	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-54540854-2	chr8	54540354	54541354	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1-int|LTR|ERVL-MaLR	-9477.0	NM_029569	76294.0	Mm.33171	NM_029569	ENSMUSG00000031519	Asb5	1110018D09Rik	ankyrin repeat and SOCs box-containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-105400192-4	chr7	105399683	105400683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001242363)	promoter-TSS (NM_001242363)	-129.0	NM_001242363	74349.0	Mm.30254	NM_199009	ENSMUSG00000044465	Fam160a2	4632419K20Rik|6530415H11Rik|FHIP	family with sequence similarity 160, member A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-29579325-4	chr16	29578827	29579827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199177)	promoter-TSS (NM_001199177)	-7.0	NM_133752	74143.0	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	29.0	52.5	45.5	14.0	21.0	18.5
Merged-chr7-30413829-4	chr7	30413339	30414339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011662)	promoter-TSS (NM_011662)	51.0	NM_011662	22177.0	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	164.0	584.0	378.5	256.0	573.0	360.5
Merged-chr11-120012697-2	chr11	120012197	120013197	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198787, intron 10 of 13)	intron (NM_001198787, intron 10 of 13)	-2070.0	NR_037225	100526518.0		NR_037225	ENSMUSG00000105524	Mir3065	mir-3065|mmu-mir-3065	microRNA 3065	ncRNA	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr5-129925053-4	chr5	129924580	129925580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16540.0	NM_026916	69034.0	Mm.211372	NM_026916	ENSMUSG00000095789	Nupr1l	1810010E01Rik|4930579G22Rik|Nupr2	nuclear protein transcriptional regulator 1 like	protein-coding	15.0	24.5	21.5	52.5	77.0	44.0
Merged-chr10-42862460-4	chr10	42861948	42862948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359265, intron 1 of 6)	intron (NM_001359265, intron 1 of 6)	1936.0	NM_001359264	268297.0	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	Scm polycomb group protein like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-97998280-2	chr16	97997780	97998780	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362093, intron 1 of 3)	intron (NM_001362093, intron 1 of 3)	933.0	NR_130962	245305.0	Mm.148033	NM_001362093		B230307C23Rik	8030444G23Rik|EG245305	RIKEN cDNA B230307C23 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127376096-4	chr7	127375602	127376602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175560)	promoter-TSS (NM_175560)	-52.0	NM_175560	269997.0	Mm.221270	NM_175560	ENSMUSG00000054381	Zfp747	6430604K15Rik	zinc finger protein 747	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32274967-4	chr4	32274464	32275464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-142471.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-94591541-4	chr15	94591055	94592055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1731.0	NM_008971	19230.0	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77462527-4	chr11	77462010	77463010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1403.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57589496-4	chr9	57588995	57589995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027895)	promoter-TSS (NM_027895)	43.0	NM_027895	71742.0	Mm.155877	NM_027895	ENSMUSG00000032308	Ulk3	1200015E14Rik	unc-51-like kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-52099390-4	chr11	52098874	52099874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019411, intron 1 of 6)	CpG	550.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111118354-8	chr9	111117878	111118878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001164838, exon 1 of 15)	5' UTR (NM_001164838, exon 1 of 15)	267.0	NM_001164838	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	31.5	112.0	95.5	56.5	121.5	74.5
Merged-chr7-43672468-3	chr7	43671989	43672989	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145582, intron 1 of 2)	intron (NM_145582, intron 1 of 2)	458.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75093615-4	chr8	75093114	75094114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010442)	promoter-TSS (NM_010442)	-4.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	63.0	196.0	125.5	66.5	181.0	89.5
Merged-chr12-3799756-4	chr12	3799241	3800241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7239.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-20028816-4	chr3	20028343	20029343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 4 of 16)	intron (NM_080634, intron 4 of 16)	6467.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27416690-2	chr2	27416190	27417190	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	10918.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-106547784-4	chr3	106547292	106548292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133869)	promoter-TSS (NM_133869)	-6.0	NM_001286986	67171.0	Mm.290488	NM_026013	ENSMUSG00000027900	Dram2	2010305N14Rik|2610318G18Rik|AI647667|Tmem77	DNA-damage regulated autophagy modulator 2	protein-coding	21.5	62.0	45.5	14.5	46.5	33.5
Merged-chr18-82825706-4	chr18	82825207	82826207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30190.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-56704706-4	chr6	56704185	56705185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025520)	promoter-TSS (NM_025520)	14.0	NM_025520	66373.0	Mm.25642	NM_025520	ENSMUSG00000091625	Lsm5	2010208O10Rik|2310034K10Rik	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4169542-4	chr19	4169043	4170043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_134148, exon 9 of 10)	exon (NM_134148, exon 9 of 10)	5936.0	NM_134148	107239.0	Mm.482310	NM_134148	ENSMUSG00000075289	Carns1	AI790298|Atpgd1|mKIAA1394	carnosine synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-56090470-2	chr9	56089970	56090970	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	494.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53262031-2	chr18	53261531	53262531	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	C-rich|Low_complexity|Low_complexity	16369.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	19.5	16.0	20.5	2.0	19.0	28.0
Merged-chr6-72163889-2	chr6	72163389	72164389	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31D_MM|LTR|ERVK	-40692.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43521210-4	chr1	43520720	43521720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 2 of 4)	intron (NM_010879, intron 2 of 4)	75469.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8499442-4	chr12	8498921	8499921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007483, exon 1 of 1)	exon (NM_007483, exon 1 of 1)	588.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	0.5	0.0	4.5	1.5	3.0	3.0
Merged-chr11-98810079-1	chr11	98809579	98810579	+	1000.0	f0_c57.idr	promoter-TSS (NR_033551)	promoter-TSS (NR_033551)	10.0	NR_033551	100037262.0	Mm.442062	NR_033551	ENSMUSG00000075576	Gm12359	-	predicted gene 12359	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59436141-4	chr4	59435651	59436651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 1 of 16)	MTD|LTR|ERVL-MaLR	2482.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	7.5	9.0	0.5	0.5	18.0	3.5
Merged-chr11-61855053-4	chr11	61854568	61855568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013881)	promoter-TSS (NM_013881)	24.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-145191580-4	chr5	145191081	145192081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020582)	promoter-TSS (NM_020582)	11.0	NM_020582	57423.0	Mm.133551	NM_020582	ENSMUSG00000038690	Atp5j2	1110019H14Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2	protein-coding	18.5	16.0	35.5	15.5	51.5	23.0
Merged-chr10-91242742-4	chr10	91242229	91243229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22110.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85533227-4	chr12	85532716	85533716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59326.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21426246-4	chr9	21425752	21426752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 1 of 19)	intron (NM_001357721, intron 1 of 19)	1344.0	NM_001357719	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138068820-4	chr4	138068350	138069350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256195, intron 4 of 34)	intron (NM_001256195, intron 4 of 34)	69668.0	NR_126429	73563.0	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	35.0	73.5	41.5	9.0	22.0	6.5
Merged-chr1-88238174-2	chr1	88237674	88238674	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 14 of 41)	intron (NM_001281466, intron 14 of 41)	11154.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89211689-3	chr15	89211186	89212186	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027805, exon 1 of 8)	5' UTR (NM_027805, exon 1 of 8)	127.0	NM_027805	71474.0	Mm.184055	NM_026813	ENSMUSG00000036561	Ppp6r2	1110033O10Rik|8430411H09Rik|B230107H12Rik|Pp6r2|Saps2	protein phosphatase 6, regulatory subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118866679-4	chr10	118866186	118867186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014390, intron 2 of 2)	intron (NM_001014390, intron 2 of 2)	2217.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	58.0	104.5	55.0	30.5	162.0	66.5
Merged-chr2-69897211-4	chr2	69896713	69897713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303033)	promoter-TSS (NM_001303033)	-33.0	NM_001303033	68795.0	Mm.314576	NM_177783	ENSMUSG00000044308	Ubr3	1110059H15Rik|4833421P10Rik|A130030D10Rik|AA409735|AA414972|AA422631|AI646861|AU016126|Zfp650|Znf650	ubiquitin protein ligase E3 component n-recognin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-87426068-1	chr9	87425568	87426568	+	1000.0	f1_balb.idr	Intergenic	RMER1A|Other|Other	-170536.0	NM_199316	382090.0	Mm.335338	NM_199316	ENSMUSG00000056919	Cep162	4922501C03Rik|mKIAA1009	centrosomal protein 162	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr2-152766649-4	chr2	152766139	152767139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289739, intron 3 of 4)	intron (NM_001289739, intron 3 of 4)	12466.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-112696282-4	chr6	112695771	112696771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167730, intron 1 of 13)	intron (NM_001167730, intron 1 of 13)	399.0	NM_021385	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-104174950-4	chr12	104174444	104175444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21072.0	NM_008458	16625.0	Mm.422814	NM_008458	ENSMUSG00000066361	Serpina3c	1A1|Kalbp|Klkbp|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3C	protein-coding	54.5	93.0	72.0	38.5	104.0	61.5
Merged-chr2-76675248-4	chr2	76674763	76675763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031256)	promoter-TSS (NM_031256)	-52.0	NM_031256	83435.0	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164866954-4	chr2	164866467	164867467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9259.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	116.5	256.5	154.0	87.0	303.5	213.5
Merged-chr8-84982823-4	chr8	84982312	84983312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4064.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	32.5	203.0	128.5	85.5	194.5	108.5
Merged-chr4-118437438-4	chr4	118436937	118437937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023223)	promoter-TSS (NM_023223)	-94.0	NM_023223	107995.0	Mm.261764	NM_023223	ENSMUSG00000006398	Cdc20	2310042N09Rik|C87100|p55CDC	cell division cycle 20	protein-coding	0.0	2.0	4.0	3.0	1.5	8.0
Merged-chr17-74717688-4	chr17	74717205	74718205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152817)	promoter-TSS (NM_152817)	-45.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	7.0	12.5	11.0	3.5	12.5	5.0
Merged-chr13-55099513-2	chr13	55099013	55100013	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293660, intron 1 of 12)	intron (NM_001293660, intron 1 of 12)	787.0	NR_121592	20184.0	Mm.259301	NM_011307	ENSMUSG00000025878	Uimc1	9430016E08Rik|D330018D10Rik|D630032M02Rik|RIP110|Rxrip110	ubiquitin interaction motif containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91070530-7	chr2	91070062	91071062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026721)	promoter-TSS (NM_026721)	-247.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100443704-3	chr15	100443204	100444204	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	20511.0	NR_040351	432982.0	Mm.234608	NM_001034883	ENSMUSG00000087444	Gm5475	EG432982	predicted gene 5475	ncRNA	34.0	112.5	65.0	15.0	3.5	13.0
Merged-chr11-32331233-4	chr11	32330808	32331808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16503.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57708953-2	chr9	57708453	57709453	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153799, intron 1 of 6)	CpG	384.0	NM_153799	353190.0	Mm.268104	NM_153799	ENSMUSG00000038957	Edc3	AA517853|Lsm16|Yjdc	enhancer of mRNA decapping 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95843157-4	chr11	95842667	95843667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163464)	promoter-TSS (NM_001163464)	-78.0	NM_001284397	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51089531-4	chr14	51089011	51090011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Tyr-TAC|tRNA|tRNA	-1566.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	38.0	126.5	90.0	49.5	129.0	84.5
Merged-chr2-155826082-3	chr2	155825579	155826579	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010579, intron 2 of 5)	intron (NM_010579, intron 2 of 5)	846.0	NM_010579	16418.0	Mm.271674	NM_010579	ENSMUSG00000027613	Eif6	1110004P11|AA408895|CAB|Itgb4bp|eIF-6|imc-415|p27(BBP)|p27BBP	eukaryotic translation initiation factor 6	protein-coding	75.0	176.0	141.5	29.0	96.0	102.5
Merged-chr11-79260184-2	chr11	79259684	79260684	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5489.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55190388-4	chr13	55189908	55190908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-19374.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119462754-1	chr11	119462254	119463254	+	1000.0	f1_balb.idr	non-coding (NR_153849, exon 4 of 4)	non-coding (NR_153849, exon 4 of 4)	28481.0	NR_153849	78439.0	Mm.440446	NR_153849	ENSMUSG00000109408	A930037H05Rik	Gm44935	RIKEN cDNA A930037H05 gene	ncRNA	0.0	5.0	2.0	3.0	0.0	0.5
Merged-chr6-125009691-4	chr6	125009229	125010229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347452)	promoter-TSS (NM_001347452)	60.0	NM_175557	269800.0	Mm.108677	NM_175557	ENSMUSG00000038346	Zfp384	BB163993|C130073D16Rik|Ciz|NP|Nmp4	zinc finger protein 384	protein-coding	50.5	131.0	129.5	50.0	136.5	136.5
Merged-chr19-40994243-4	chr19	40993738	40994738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008528, exon 1 of 17)	5' UTR (NM_008528, exon 1 of 17)	297.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr18-61132536-2	chr18	61132036	61133036	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178277, exon 20 of 20)	exon (NM_178277, exon 20 of 20)	15068.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160070575-4	chr2	160070081	160071081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53928.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	41.0	180.5	126.5	47.5	107.0	66.5
Merged-chr4-126103295-4	chr4	126102798	126103798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145827)	promoter-TSS (NM_001145827)	-659.0	NM_028800	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	97.5	227.0	167.0	107.0	242.5	175.5
Merged-chr2-130667736-4	chr2	130667241	130668241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025922)	promoter-TSS (NM_025922)	-100.0	NM_025922	16434.0	Mm.21399	NM_025922	ENSMUSG00000074797	Itpa	2010016I08Rik|AU020102|ITPase|Itp|NTPase	inosine triphosphatase (nucleoside triphosphate pyrophosphatase)	protein-coding	31.5	28.0	23.0	38.5	60.0	47.5
Merged-chr2-30048849-4	chr2	30048354	30049354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008498)	promoter-TSS (NM_001008498)	25.0	NM_001008498	71820.0	Mm.88053	NM_001008498	ENSMUSG00000039715	Wdr34	3200002I06Rik	WD repeat domain 34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25282431-3	chr7	25281938	25282938	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027882, exon 1 of 20)	5' UTR (NM_027882, exon 1 of 20)	259.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60714885-4	chr18	60714369	60715369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	12697.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41332402-4	chr19	41331870	41332870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	52700.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	130.0	339.5	285.5	150.5	289.5	229.0
Merged-chr9-99499582-4	chr9	99499085	99500085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028768, intron 15 of 21)	intron (NM_028768, intron 15 of 21)	29164.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76527510-7	chr16	76527009	76528009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21286.0	NR_155449	102632730.0		NR_155449		Gm30726	-	predicted gene, 30726	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114774711-4	chr5	114774215	114775215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026718)	promoter-TSS (NM_026718)	268.0	NR_027872	67642.0	Mm.482535	NM_175120	ENSMUSG00000092183	4930515G01Rik	-	RIKEN cDNA 4930515G01 gene	ncRNA	82.0	123.5	101.0	69.0	137.0	125.5
Merged-chr5-31054774-4	chr5	31054184	31055184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023525)	promoter-TSS (NM_023525)	-96.0	NM_023525	69719.0	Mm.305535	NM_023525	ENSMUSG00000013629	Cad	2410008J01Rik|AU018859|Cpad	carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109676586-4	chr4	109676095	109677095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007983)	promoter-TSS (NM_007983)	-32.0	NM_007983	14084.0	Mm.318259	NM_007983	ENSMUSG00000010517	Faf1	AA408698|Dffrx|Fam	Fas-associated factor 1	protein-coding	133.0	136.0	170.5	89.0	167.5	163.5
Merged-chr16-87625531-4	chr16	87625030	87626030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72200.0	NM_144854	224419.0	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	59.0	124.0	104.0	42.0	124.0	97.0
Merged-chr8-46930640-2	chr8	46930140	46931140	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56247.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-7502907-4	chr3	7502405	7503405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173181)	promoter-TSS (NM_173181)	-521.0	NM_173181	67306.0	Mm.332366	NM_173181	ENSMUSG00000043542	Zc2hc1a	3110050N22Rik|AI790358|AU023959|Fam164a	zinc finger, C2HC-type containing 1A	protein-coding	42.0	126.5	62.0	35.5	129.0	66.0
Merged-chr2-116955114-4	chr2	116954607	116955607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54955.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125444882-4	chr7	125444367	125445367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029842, intron 1 of 7)	CpG	247.0	NM_029842	77035.0	Mm.307239	NM_029842	ENSMUSG00000030752	Kdm8	3110005O21Rik|Jmjd5	lysine (K)-specific demethylase 8	protein-coding	83.0	192.5	189.5	92.0	236.0	221.5
Merged-chr13-101700223-2	chr13	101699723	101700723	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 7 of 15)	intron (NM_001077495, intron 7 of 15)	-7593.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73680408-4	chr12	73679915	73680915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	95619.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-67589065-4	chr11	67588548	67589548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109657, intron 1 of 13)	intron (NM_001109657, intron 1 of 13)	2548.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr4-119966909-4	chr4	119966408	119967408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	152230.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	23.0	59.0	49.5	31.5	42.5	58.5
Merged-chr10-127063453-4	chr10	127062955	127063955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009870)	promoter-TSS (NM_009870)	-80.0	NM_009870	12567.0	Mm.6839	NM_009870	ENSMUSG00000006728	Cdk4	Crk3	cyclin-dependent kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24653264-4	chr16	24652777	24653777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-68578.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98960521-4	chr11	98959984	98960984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001176528)	promoter-TSS (NM_001176528)	13.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-31803628-3	chr11	31803111	31804111	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102312, intron 1 of 4)	intron (NR_102312, intron 1 of 4)	20936.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	0.0	14.0	19.5	9.0	10.5	15.5
Merged-chr11-78301512-4	chr11	78301007	78302007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017407)	promoter-TSS (NM_017407)	-84.0	NM_017407	54141.0	Mm.24250	NM_017407	ENSMUSG00000002055	Spag5	AI874642|D11Bhm180e|Deepest|MAP126|Mastrin|S17	sperm associated antigen 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74989479-4	chr15	74988991	74989991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6061.0	NM_020498	57248.0	Mm.358339	NM_020498	ENSMUSG00000022586	Ly6i	AI789751|Ly-6I|Ly-6M	lymphocyte antigen 6 complex, locus I	protein-coding	111.0	299.0	150.0	53.5	144.5	60.5
Merged-chr16-36641202-4	chr16	36640710	36641710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	24867.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70754597-4	chr8	70754093	70755093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009001)	promoter-TSS (NM_009001)	-86.0	NM_001328047	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115699463-4	chr11	115698967	115699967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313937)	promoter-TSS (NM_001313937)	67.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-33163170-4	chr11	33162622	33163622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252261)	promoter-TSS (NM_001252261)	84.0	NM_001252261	18148.0	Mm.485384	NM_008722	ENSMUSG00000057113	Npm1	B23|NO38|Npm	nucleophosmin 1	protein-coding	15.0	14.0	13.0	0.0	9.0	2.0
Merged-chr11-23830479-4	chr11	23829985	23830985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-59515.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-59212558-4	chr3	59212103	59213103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	-1721.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-140975646-4	chr4	140975156	140976156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355515, intron 5 of 7)	intron (NM_001355515, intron 5 of 7)	-11217.0	NM_029097	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12460632-4	chr13	12460155	12461155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291057, intron 1 of 8)	intron (NM_001291057, intron 1 of 8)	1083.0	NM_001291060	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12904395-2	chr13	12903895	12904895	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100935.0	NM_031191	18811.0	Mm.88796	NM_031191	ENSMUSG00000079092	Prl2c2	Ghd2|MRP-1|PLF-1|Plf|Plf1	prolactin family 2, subfamily c, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36071602-4	chr16	36071093	36072093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027342)	promoter-TSS (NM_027342)	-67.0	NM_198645	381045.0	Mm.310434	NM_198645	ENSMUSG00000075229	Ccdc58	A930007B11Rik|AI413631	coiled-coil domain containing 58	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65975537-4	chr3	65975034	65976034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17285.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	11.5	12.5	19.5	7.0	24.0	18.5
Merged-chr13-98896919-4	chr13	98896403	98897403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 1 of 23)	intron (NM_178716, intron 1 of 23)	-5861.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	4.5	20.0	12.5	7.0	18.0	12.0
Merged-chr8-80948602-4	chr8	80948088	80949088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66318.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	13.5	21.0	17.0	12.0	18.5	12.5
Merged-chr16-38239945-4	chr16	38239440	38240440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 11 of 11)	intron (NM_001347232, intron 11 of 11)	54884.0	NM_010936	18171.0	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106330366-4	chr9	106329865	106330865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 10 of 10)	MTC|LTR|ERVL-MaLR	-38267.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	27.5	97.5	55.0	25.0	25.0	15.0
Merged-chr10-117710198-4	chr10	117709701	117710701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010786, intron 1 of 11)	CpG-1528	557.0	NM_010786	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145215125-2	chr4	145214625	145215625	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011610, exon 10 of 10)	3' UTR (NM_011610, exon 10 of 10)	-20120.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-44072675-4	chr4	44072162	44073162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190414)	promoter-TSS (NM_001190414)	55.0	NM_001357539	50798.0	Mm.256718	NM_015828	ENSMUSG00000028479	Gne	2310066H07Rik|DMRV|GLCNE|IBM2|NM|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73681389-4	chr12	73680878	73681878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	96582.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19458860-4	chr7	19458358	19459358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172279)	promoter-TSS (NM_172279)	-364.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	47.5	42.5	28.5	12.0	25.0	27.5
Merged-chr15-84256472-4	chr15	84255989	84256989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	intron (NM_133167, intron 1 of 12)	24446.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105297669-4	chr8	105297223	105298223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148952)	promoter-TSS (NM_148952)	60.0	NM_148952	104394.0	Mm.34554	NM_148952	ENSMUSG00000014859	E2f4	2010111M04Rik|AI427446	E2F transcription factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71200743-4	chr6	71200250	71201250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017399, intron 1 of 3)	intron (NM_017399, intron 1 of 3)	871.0	NM_017399	14080.0	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95322365-4	chr10	95321868	95322868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	1341.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73558623-4	chr7	73558131	73559131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037569)	promoter-TSS (NR_037569)	-236.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36038962-4	chr1	36038468	36039468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29432.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60723374-4	chr18	60722877	60723877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	4189.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61452331-3	chr10	61451855	61452855	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010124, intron 1 of 2)	CpG	314.0	NM_010124	13688.0	Mm.259516	NM_010124	ENSMUSG00000020091	Eif4ebp2	2810011I19Rik|4E-BP2|AA792569|BC010348|PHAS-II	eukaryotic translation initiation factor 4E binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-28099378-4	chr3	28098866	28099866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 19 of 25)	intron (NM_008875, intron 19 of 25)	115195.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-115343264-4	chr10	115342776	115343776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359472, intron 6 of 6)	intron (NM_001359472, intron 6 of 6)	18973.0	NM_001359470	67226.0	Mm.29647	NM_133683	ENSMUSG00000069520	Tmem19	2810428F02Rik|AW125171	transmembrane protein 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5724747-4	chr19	5724239	5725239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114595, intron 1 of 17)	intron (NM_001114595, intron 1 of 17)	1578.0	NM_001114595	114601.0	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	7.5	18.0	7.0	2.0	5.5	11.5
Merged-chr18-53903803-4	chr18	53903248	53904248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152809, intron 3 of 12)	intron (NM_152809, intron 3 of 12)	41635.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	47.0	90.0	60.5	35.0	84.5	70.0
Merged-chr2-166730764-4	chr2	166730258	166731258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16926.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-45927713-2	chr5	45927213	45928213	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_110478, exon 2 of 3)	non-coding (NR_110478, exon 2 of 3)	4696.0	NR_110478	78106.0	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40222719-4	chr12	40222148	40223148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045157)	promoter-TSS (NR_045157)	163.0	NR_035459	100316693.0		NR_035459	ENSMUSG00000089371	Mir1938	mir-1938|mmu-mir-1938	microRNA 1938	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-71489086-4	chr4	71488591	71489591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	711802.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-64496249-4	chr11	64495763	64496763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178870, intron 1 of 1)	intron (NM_178870, intron 1 of 1)	-59589.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	45.0	87.0	100.0	23.5	26.5	61.5
Merged-chr8-104342014-2	chr8	104341514	104342514	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024217, intron 1 of 4)	intron (NM_024217, intron 1 of 4)	1420.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46202708-4	chr17	46202226	46203226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030715)	promoter-TSS (NM_030715)	-101.0	NM_030715	80905.0	Mm.311585	NM_030715	ENSMUSG00000023953	Polh	RAD30A|XPV	polymerase (DNA directed), eta (RAD 30 related)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44344001-4	chr9	44343488	44344488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013551, intron 1 of 13)	CpG	240.0	NM_013551	15288.0	Mm.247676	NM_013551	ENSMUSG00000032126	Hmbs	PBGD|T25658|Ups|Uros1	hydroxymethylbilane synthase	protein-coding	3.0	26.5	19.0	19.0	9.5	21.0
Merged-chr7-30121860-4	chr7	30121383	30122383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081007)	promoter-TSS (NM_001081007)	-49.0	NM_001081007	233060.0	Mm.443484	NM_001081007	ENSMUSG00000074220	Zfp382	4930428B01Rik|5930415A09Rik|KS1|Znf382	zinc finger protein 382	protein-coding	57.0	117.5	46.5	43.0	81.5	56.0
Merged-chr5-65102833-4	chr5	65102338	65103338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4730.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56938972-4	chr17	56938493	56939493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-3605.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71367483-4	chr8	71366985	71367985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025917, intron 1 of 7)	intron (NM_025917, intron 1 of 7)	268.0	NM_025917	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	91.0	255.0	164.5	85.0	220.0	177.5
Merged-chr2-45185439-4	chr2	45184925	45185925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67983.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-144243639-4	chr1	144243107	144244107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5497.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92415888-4	chr16	92415388	92416388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-15810.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78532287-4	chr15	78531769	78532769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2618.0	NM_028331	72709.0	Mm.34776	NM_028331	ENSMUSG00000022440	C1qtnf6	2810036M19Rik|CTRP6	C1q and tumor necrosis factor related protein 6	protein-coding	9.0	2.0	12.0	22.0	12.0	10.5
Merged-chr4-3574907-4	chr4	3574428	3575428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054089)	promoter-TSS (NM_054089)	49.0	NM_054089	116940.0	Mm.171323	NM_054089	ENSMUSG00000028233	Tgs1	D4Ertd800e|Ncoa6ip|Pimt	trimethylguanosine synthase 1	protein-coding	12.0	28.0	33.5	12.5	27.0	26.5
Merged-chr13-23535294-4	chr13	23534786	23535786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145073)	promoter-TSS (NM_145073)	-132.0	NM_145073	97908.0	Mm.261657	NM_145073	ENSMUSG00000099517	Hist1h3g	H3.1-221|M32460	histone cluster 1, H3g	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79958941-2	chr10	79958442	79959442	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-1210.0	NM_175450	216156.0	Mm.35828	NM_175450	ENSMUSG00000035754	Wdr18	2310012I10Rik|AU044733|AW122032	WD repeat domain 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-80315094-4	chr2	80314578	80315578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024181)	promoter-TSS (NM_024181)	-388.0	NM_024181	66861.0	Mm.21762	NM_024181	ENSMUSG00000027006	Dnajc10	1200006L06Rik|D2Ertd706e|ERdj5|JPDI	DnaJ heat shock protein family (Hsp40) member C10	protein-coding	15.0	14.5	5.5	5.5	30.0	16.5
Merged-chr18-67641487-4	chr18	67640977	67641977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134138)	promoter-TSS (NM_134138)	-122.0	NM_001081073	225659.0	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	0.0	0.0	5.0	1.5	2.0	4.5
Merged-chr10-86727810-4	chr10	86727324	86728324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003910, intron 4 of 15)	intron (NM_001003910, intron 4 of 15)	15059.0	NM_153595	103220.0	Mm.440762	NM_153595	ENSMUSG00000044937	Ttc41	AI449705|AU041509|Gnn	tetratricopeptide repeat domain 41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82571237-2	chr11	82570737	82571737	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62116.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18998248-4	chr2	18997752	18998752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355149)	promoter-TSS (NM_001355149)	-67.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80065509-3	chr7	80065014	80066014	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045695, intron 2 of 2)	intron (NR_045695, intron 2 of 2)	9743.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	8.5	20.5	23.0	10.5	56.0	35.0
Merged-chr6-50566606-4	chr6	50566088	50567088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015581)	promoter-TSS (NR_015581)	-55.0	NR_027892	73183.0	Mm.430720	NR_015581	ENSMUSG00000085776	5430402O13Rik	3110047M22Rik	RIKEN cDNA 5430402O13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113592930-4	chr13	113592429	113593429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_130796, exon 2 of 2)	3' UTR (NM_130796, exon 2 of 2)	25635.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34894363-4	chr17	34893887	34894887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198886)	promoter-TSS (NM_198886)	-172.0	NM_198886	193736.0	Mm.161119	NM_198886	ENSMUSG00000049823	Zbtb12	BC020447|Bat-9|Bat9|G10|NG35	zinc finger and BTB domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107891825-2	chr13	107891325	107892325	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1761.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97483814-2	chr6	97483326	97484326	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	ORR1E|LTR|ERVL-MaLR	3994.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	58.0	153.5	113.0	30.5	99.0	59.0
Merged-chr9-109875435-4	chr9	109874925	109875925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007658)	promoter-TSS (NM_007658)	-154.0	NM_007658	12530.0	Mm.307103	NM_007658	ENSMUSG00000032477	Cdc25a	D9Ertd393e	cell division cycle 25A	protein-coding	50.0	66.5	61.5	29.0	85.5	74.0
Merged-chr10-71369619-4	chr10	71369103	71370103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027184, intron 3 of 5)	intron (NM_027184, intron 3 of 5)	21840.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97797144-2	chr11	97796644	97797644	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2421.0	NM_010688	16796.0	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	0.0	0.0	4.5	0.0	0.0	4.5
Merged-chr19-32186644-4	chr19	32186149	32187149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	24364.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38473873-4	chr15	38473365	38474365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GC_rich|Low_complexity|Low_complexity	16682.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98818379-2	chr13	98817879	98818879	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2930.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0.0	2.0	7.5	1.5	2.5	1.5
Merged-chr1-171247210-4	chr1	171246714	171247714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153064)	promoter-TSS (NM_153064)	-92.0	NM_153064	226646.0	Mm.21669	NM_153064	ENSMUSG00000013593	Ndufs2	CI-49kD	NADH dehydrogenase (ubiquinone) Fe-S protein 2	protein-coding	48.0	175.5	158.0	92.0	188.0	151.0
Merged-chr8-3648520-4	chr8	3648016	3649016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7254.0	NM_001204959	57264.0	Mm.1181	NM_022984	ENSMUSG00000012705	Retn	ADSF|Fizz3|Rstn|Xcp4	resistin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88201151-4	chr10	88200663	88201663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027487)	promoter-TSS (NM_027487)	66.0	NM_027487	67282.0	Mm.208465	NM_026070	ENSMUSG00000020056	Washc3	2900091E11Rik|5730495F03Rik|Ccdc53	WASH complex subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6911088-2	chr19	6910588	6911588	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358444)	promoter-TSS (NM_001358444)	-982.0	NM_001358444	54683.0	Mm.279782	NM_012021	ENSMUSG00000024953	Prdx5	AOEB166|AOPP|PLP|Pmp20|Prdx6|PrxV	peroxiredoxin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125189031-4	chr5	125188540	125189540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B4|LTR|ERVL	-9826.0	NM_001253904	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	1.5	23.0	3.5	1.5	13.0	1.0
Merged-chr9-63399268-4	chr9	63398766	63399766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027090)	promoter-TSS (NM_027090)	-22.0	NM_027090	69478.0	Mm.113942	NM_027090	ENSMUSG00000032403	2300009A05Rik	-	RIKEN cDNA 2300009A05 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91870393-4	chr16	91869882	91870882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001110275, exon 29 of 29)	3' UTR (NM_001110275, exon 29 of 29)	61248.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13338687-4	chr8	13338185	13339185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291766)	promoter-TSS (NM_001291766)	-66.0	NM_001291765	21781.0	Mm.925	NM_009361	ENSMUSG00000038482	Tfdp1	Dp1|Drtf1	transcription factor Dp 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76194738-4	chr12	76194264	76195264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-17505.0	NR_104386	13983.0	Mm.2561	NM_010157	ENSMUSG00000021055	Esr2	ER[b]|ERbeta|Estrb	estrogen receptor 2 (beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-103341368-4	chr12	103340851	103341851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 2 of 9)	intron (NM_023049, intron 2 of 9)	14650.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76351718-4	chr15	76351223	76352223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025340)	promoter-TSS (NM_025340)	429.0	NM_026859	68877.0	Mm.289680	NM_026859	ENSMUSG00000022553	Maf1	1110068E11Rik|AU042856	MAF1 homolog, negative regulator of RNA polymerase III	protein-coding	20.0	40.5	31.5	52.5	47.5	62.0
Merged-chr10-24638514-2	chr10	24638014	24639014	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008813, exon 25 of 25)	3' UTR (NM_008813, exon 25 of 25)	43072.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25537257-2	chr15	25536757	25537757	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85293.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-26805082-4	chr11	26804588	26805588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19980.0	NR_002890	654472.0	Mm.347777	NR_002890		Gm12070	-	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	1.5	3.0	2.5	0.5	1.0	2.5
Merged-chr18-46434634-4	chr18	46434136	46435136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	31180.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-59228658-4	chr7	59228157	59229157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173010)	promoter-TSS (NM_173010)	-93.0	NM_001033962	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	17.5	36.5	29.5	6.0	69.0	44.0
Merged-chr14-20845890-4	chr14	20845393	20846393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9231.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113649003-4	chr5	113648508	113649508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	1382.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74648160-4	chr11	74647665	74648665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1330.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-52563793-4	chr18	52563298	52564298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33931.0	NM_001286182	16948.0	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-21909690-4	chr17	21909189	21910189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001256493, exon 1 of 5)	5' UTR (NM_001256493, exon 1 of 5)	237.0	NM_001256493	70081.0	Mm.245648	NM_001256493	ENSMUSG00000078546	Zfp995	2210404O09Rik	zinc finger protein 995	protein-coding	4.0	7.5	3.0	0.0	4.5	7.0
Merged-chr18-31609846-5	chr18	31609254	31610254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026165, exon 1 of 8)	exon (NM_026165, exon 1 of 8)	176.0	NM_026165	67453.0	Mm.23896	NM_026165	ENSMUSG00000024259	Slc25a46	1200007B05Rik|AI325987	solute carrier family 25, member 46	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102394633-4	chr12	102394135	102395135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 13 of 13)	intron (NM_011175, intron 13 of 13)	45178.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	14.0	13.5	9.5	6.5	7.0	5.5
Merged-chr17-27012146-4	chr17	27011651	27012651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-5884.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	7.5	19.0	5.0	7.5	11.5	5.0
Merged-chr4-136021793-4	chr4	136021295	136022295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013736)	promoter-TSS (NM_013736)	-146.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	2.5	3.0	2.5	1.5	1.5	1.0
Merged-chr9-35055796-4	chr9	35055275	35056275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-60953.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	4.0	15.5	9.5	15.0	25.5	17.0
Merged-chr11-70667512-4	chr11	70667003	70668003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167669, intron 1 of 6)	intron (NM_001167669, intron 1 of 6)	1913.0	NM_172561	216873.0	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91761985-4	chr16	91761503	91762503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	32632.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149307822-4	chr4	149307303	149308303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290995)	promoter-TSS (NM_001290995)	-70.0	NM_001290995	16561.0	Mm.402393	NM_008441	ENSMUSG00000063077	Kif1b	A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204	kinesin family member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145308424-4	chr7	145307927	145308927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145379, exon 3 of 3)	exon (NM_145379, exon 3 of 3)	-6408.0	NM_203490	211578.0	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	0.0	2.0	2.5	0.0	0.0	0.5
Merged-chr12-25097330-4	chr12	25096825	25097825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1233.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	88.0	154.5	81.0	45.5	101.0	99.5
Merged-chr5-122733911-2	chr5	122733411	122734411	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145358, exon 16 of 16)	3' UTR (NM_145358, exon 16 of 16)	26367.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88819470-4	chr15	88818939	88819939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145477)	promoter-TSS (NM_145477)	-121.0	NM_145477	223774.0	Mm.41512	NM_145477	ENSMUSG00000035845	Alg12	ECM39	asparagine-linked glycosylation 12 (alpha-1,6-mannosyltransferase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38965655-4	chr6	38965160	38966160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	MTEa|LTR|ERVL-MaLR	46674.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-125317570-4	chr10	125317067	125318067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 1 of 5)	intron (NM_001358496, intron 1 of 5)	-8751.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39731506-4	chr10	39731005	39732005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011264)	promoter-TSS (NM_011264)	502.0	NR_038037	327744.0	Mm.295265	NM_183198	ENSMUSG00000087177	E130307A14Rik	-	RIKEN cDNA E130307A14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-57660178-4	chr18	57659762	57660762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311063, intron 5 of 5)	intron (NM_001311063, intron 5 of 5)	-21677.0	NR_045360	70157.0	Mm.490532	NR_045360		2210409D07Rik	-	RIKEN cDNA 2210409D07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17181501-4	chr16	17180967	17181967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009456, intron 1 of 3)	L3|LINE|CR1	20025.0	NM_009456	22195.0	Mm.3074	NM_009456	ENSMUSG00000038965	Ube2l3	C79827|UbcM4|Ubce7	ubiquitin-conjugating enzyme E2L 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83675912-4	chr11	83675413	83676413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13329.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96579942-3	chr3	96579434	96580434	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027241, intron 6 of 7)	intron (NM_027241, intron 6 of 7)	-13133.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	28.0	47.5	77.0	16.5	111.0	39.0
Merged-chr13-49186900-2	chr13	49186400	49187400	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013610)	promoter-TSS (NM_013610)	-647.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107318745-4	chr11	107318230	107319230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	B1_Mur1|SINE|Alu	-129349.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94370203-2	chr10	94369703	94370703	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	MTD|LTR|ERVL-MaLR	58254.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19803903-4	chr7	19803399	19804399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7090.0	NM_023224	80794.0	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34655799-4	chr17	34655313	34656313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_017406)	TTS (NM_017406)	8667.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	0.0	0.0	1.5	0.0	3.0	0.5
Merged-chr6-72396116-4	chr6	72395615	72396615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5448.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59948185-4	chr11	59947686	59948686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045273)	promoter-TSS (NR_045273)	-28.0	NM_138675	192191.0	Mm.125288	NM_138675	ENSMUSG00000061650	Med9	BC019367|Med25	mediator complex subunit 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41433350-3	chr13	41432861	41433861	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	53999.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46533806-4	chr18	46533306	46534306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7835.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69125841-2	chr11	69125341	69126341	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011786)	promoter-TSS (NM_011786)	-536.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	13.5	124.5	59.5	28.0	101.5	55.0
Merged-chr11-106787681-4	chr11	106787180	106788180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355676, intron 2 of 13)	CpG	814.0	NM_007840	13207.0	Mm.491096	NM_007840	ENSMUSG00000020719	Ddx5	2600009A06Rik|G17P1|HUMP68|Hlr1|p68	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	protein-coding	33.0	77.0	30.0	5.5	60.5	50.0
Merged-chr11-75578750-2	chr11	75578250	75579250	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-9329.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-96670956-4	chr13	96670471	96671471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008255)	promoter-TSS (NM_008255)	-35.0	NM_008255	15357.0	Mm.316652	NM_008255	ENSMUSG00000021670	Hmgcr	HMG-CoAR|Red	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67702916-4	chr10	67702428	67703428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130969.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95148799-4	chr10	95148286	95149286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4-int|LTR|ERVL-MaLR	-2961.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132859871-4	chr7	132859378	132860378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198017, intron 1 of 8)	intron (NM_198017, intron 1 of 8)	653.0	NM_198017	109359.0	Mm.274824	NM_198017	ENSMUSG00000030965	Abraxas2	AA589499|AI853413|Abro1|C430003P19Rik|Fam175b	BRISC complex subunit	protein-coding	18.0	54.5	24.0	22.0	35.0	30.0
Merged-chr13-43512949-3	chr13	43512442	43513442	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-31969.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	3.5	11.0	1.5	0.5	3.5	4.5
Merged-chr4-53386427-4	chr4	53385904	53386904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR89|LTR|ERVL?	-54009.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80329949-4	chr10	80329454	80330454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008793)	promoter-TSS (NM_008793)	-191.0	NM_001204931	70335.0	Mm.28147	NM_139292	ENSMUSG00000035504	Reep6	0610011M24Rik|Dp1l1	receptor accessory protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17733222-4	chr10	17732732	17733732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10004.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.5	1.5	3.0	0.0	4.5	1.0
Merged-chr8-126536333-4	chr8	126535829	126536829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57107.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-144314667-4	chr1	144314155	144315155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-65551.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80678338-4	chr10	80677840	80678840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2047.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122680578-4	chr10	122680079	122681079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	1264.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	25.0	37.5	43.5	14.0	48.5	38.5
Merged-chr3-146157036-4	chr3	146156542	146157542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 1 of 13)	intron (NM_001005846, intron 1 of 13)	6868.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	0.0	2.5	4.0	0.5	5.0	2.5
Merged-chr4-36038965-4	chr4	36038463	36039463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166000, intron 7 of 8)	intron (NM_001166000, intron 7 of 8)	-193759.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63988928-2	chr9	63988428	63989428	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	33131.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-17019909-2	chr11	17019409	17020409	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11191.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46424888-2	chr19	46424388	46425388	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 2 of 11)	intron (NM_001025391, intron 2 of 11)	27992.0	NM_015752	24069.0	Mm.41210	NM_015752	ENSMUSG00000025231	Sufu	Su(fu)	SUFU negative regulator of hedgehog signaling	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32506854-4	chr2	32506355	32507355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28504.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29240888-2	chr6	29240388	29241388	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24524.0	NM_001302934	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8741569-8	chr19	8741075	8742075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019829)	promoter-TSS (NM_019829)	151.0	NM_001167799	56389.0	Mm.153061	NM_019829	ENSMUSG00000010110	Stx5a	0610031F24Rik|D19Ertd627e|Stx5	syntaxin 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171232029-4	chr1	171231536	171232536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010185, intron 1 of 4)	intron (NM_010185, intron 1 of 4)	2313.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	68.5	107.5	58.5	55.0	86.5	74.5
Merged-chr2-26603910-4	chr2	26603419	26604419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026212, intron 1 of 5)	CpG	498.0	NM_026212	67512.0	Mm.24244	NM_026212	ENSMUSG00000026922	Agpat2	2510002J07Rik|AV000834|BSCL|BSCL1|LPAAB|LPAAT-beta	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-16212965-4	chr2	16212450	16213450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310455, intron 35 of 38)	intron (NM_001310455, intron 35 of 38)	-143354.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-64849693-2	chr8	64849193	64850193	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178633, exon 1 of 15)	5' UTR (NM_178633, exon 1 of 15)	231.0	NM_178633	77113.0	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|8530402H02Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80933784-4	chr17	80933297	80934297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_131127)	TTS (NR_131127)	-10835.0	NM_026516	68027.0	Mm.357108	NM_026516	ENSMUSG00000024245	Tmem178	2810417M05Rik|Tmem178a	transmembrane protein 178	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73453923-4	chr2	73453425	73454425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289722)	promoter-TSS (NM_001289722)	-36.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83109113-4	chr6	83108630	83109630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026744)	promoter-TSS (NM_026744)	22.0	NM_026744	68499.0	Mm.333183	NM_026744	ENSMUSG00000030037	Mrpl53	1110007K17Rik	mitochondrial ribosomal protein L53	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49699146-4	chr16	49698645	49699645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028680)	promoter-TSS (NM_028680)	-149.0	NM_028680	73916.0	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74456335-2	chr17	74455835	74456835	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 1 of 8)	Lx9|LINE|L1	2773.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-72458151-4	chr11	72457637	72458637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153060, intron 5 of 12)	intron (NM_153060, intron 5 of 12)	16810.0	NM_016776	18432.0	Mm.147946	NM_016776	ENSMUSG00000040463	Mybbp1a	AL024407|AU019902|P160|p160MBP|p67MBP	MYB binding protein (P160) 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57060461-6	chr17	57060003	57061003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025877)	promoter-TSS (NM_025877)	-640.0	NM_025877	66972.0	Mm.23720	NM_025877	ENSMUSG00000046329	Slc25a23	2310067G05Rik|SCaMC-3	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40852109-4	chr4	40851621	40852621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022305, intron 1 of 5)	MIRb|SINE|MIR	-1983.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30956074-4	chr7	30955592	30956592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011680, intron 3 of 9)	CpG-12986	711.0	NM_011680	22282.0	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-106462200-2	chr3	106461700	106462700	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20231.0	NM_001093754	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-142089822-2	chr4	142089322	142090322	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-5518.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108783757-4	chr9	108783261	108784261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12233.0	NM_029634	76500.0	Mm.276336	NM_029634	ENSMUSG00000032599	Ip6k2	1500005N04Rik|AW050208|Ihpk2	inositol hexaphosphate kinase 2	protein-coding	0.0	0.0	1.0	0.0	6.0	0.0
Merged-chr7-63939124-4	chr7	63938621	63939621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021366)	promoter-TSS (NM_021366)	-206.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	52.0	120.5	92.5	66.5	124.5	89.0
Merged-chr10-85125856-4	chr10	85125330	85126330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028832, intron 2 of 2)	L2|LINE|L2	2197.0	NM_028832	74238.0	Mm.255401	NM_028832	ENSMUSG00000049038	Mterf2	1700007D05Rik|Mterfd3	mitochondrial transcription termination factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65091698-4	chr5	65091213	65092213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15855.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59670059-2	chr2	59669559	59670559	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290659, intron 1 of 25)	intron (NM_001290659, intron 1 of 25)	23290.0	NM_001290659	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117663298-2	chr11	117662798	117663798	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 1 of 21)	U3|snRNA|snRNA	9009.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17034304-2	chr6	17033804	17034804	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-30845.0	NM_207176	21753.0	Mm.436548	NM_011570	ENSMUSG00000029552	Tes	D6Ertd352e|TESS|Tes1|Tes2|testin2	testis derived transcript	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103968477-4	chr3	103967983	103968983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030676)	promoter-TSS (NR_030676)	-167.0	NR_030676	100125931.0	Mm.400392	NR_030676	ENSMUSG00000089998	Phtf1os	A130049A11Rik	putative homeodomain transcription factor 1, opposite strand	ncRNA	7.0	6.0	3.0	4.5	2.0	5.5
Merged-chr16-57181379-4	chr16	57180879	57181879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 14 of 17)	intron (NM_026254, intron 14 of 17)	-14047.0	NM_023175	52633.0	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10018192-4	chr19	10017695	10018695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347430)	promoter-TSS (NM_001347430)	1.0	NM_001347430	74760.0	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	5.0	5.0	7.5	5.5	8.0	1.5
Merged-chr9-119357518-4	chr9	119357006	119358006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001199568, exon 1 of 20)	5' UTR (NM_001199568, exon 1 of 20)	125.0	NM_001359699	102448.0	Mm.219497	NM_001033209	ENSMUSG00000035769	Xylb	AI132223|AI327421	xylulokinase homolog (H. influenzae)	protein-coding	13.5	38.5	13.0	11.5	16.5	31.0
Merged-chr1-154094483-4	chr1	154093977	154094977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106710.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36560392-4	chr18	36559883	36560883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175375)	promoter-TSS (NM_175375)	-220.0	NM_175375	108857.0	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	29.5	102.0	68.0	29.0	100.5	72.5
Merged-chr16-30938844-4	chr16	30938344	30939344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	142588.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	3.0	1.5	3.5	3.0	1.5	5.0
Merged-chr1-171887303-4	chr1	171886786	171887786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289470, intron 8 of 8)	intron (NM_001289470, intron 8 of 8)	-30176.0	NM_030710	30925.0	Mm.486404	NM_030710	ENSMUSG00000015314	Slamf6	KAL1|KAL1b|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding	40.5	56.5	54.5	21.0	96.5	79.5
Merged-chr3-154597152-4	chr3	154596667	154597667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168358)	promoter-TSS (NM_001168358)	-30.0	NM_001357673	12972.0	Mm.374855	NM_009968	ENSMUSG00000028199	Cryz	Sez9	crystallin, zeta	protein-coding	22.5	46.5	15.0	13.5	41.5	40.5
Merged-chr13-41331815-4	chr13	41331331	41332331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 3 of 7)	intron (NM_001111324, intron 3 of 7)	27170.0	NM_017464	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87987146-3	chr11	87986678	87987678	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168472)	promoter-TSS (NM_001168472)	355.0	NM_026556	68097.0	Mm.246436	NM_026556	ENSMUSG00000020483	Dynll2	1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2	dynein light chain LC8-type 2	protein-coding	58.5	127.5	103.0	40.5	96.0	87.0
Merged-chr6-136805085-4	chr6	136804594	136805594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175652)	promoter-TSS (NM_175652)	-663.0	NM_175652	320332.0	Mm.246720	NM_175652	ENSMUSG00000096010	Hist4h4	B130044J01Rik	histone cluster 4, H4	protein-coding	24.0	48.0	22.5	39.5	51.5	32.5
Merged-chr19-42080163-4	chr19	42079680	42080680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198108, intron 1 of 4)	MLT1H|LTR|ERVL-MaLR	6190.0	NM_198108	226123.0	Mm.259441	NM_198108	ENSMUSG00000049670	Morn4	-	MORN repeat containing 4	protein-coding	0.0	3.0	3.5	0.0	2.0	2.0
Merged-chr18-34989486-4	chr18	34988974	34989974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35123.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	8.5	17.0	17.0	1.5	13.0	19.0
Merged-chr17-86962557-4	chr17	86962056	86963056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145491)	promoter-TSS (NM_145491)	-555.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	5.0	15.0	15.0	4.5	30.0	31.0
Merged-chr2-101678434-4	chr2	101677940	101678940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009424)	promoter-TSS (NM_009424)	20.0	NM_001303273	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36679406-4	chr18	36678902	36679902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357512)	promoter-TSS (NM_001357512)	-36.0	NM_146085	225372.0	Mm.89673	NM_146085	ENSMUSG00000006050	Apbb3	Fe65l2|Rirl2|TR2S	amyloid beta (A4) precursor protein-binding, family B, member 3	protein-coding	12.5	53.5	73.0	21.0	26.5	34.5
Merged-chr15-27672347-4	chr15	27671871	27672871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	9171.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-82764320-4	chr6	82763810	82764810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 1 of 17)	intron (NM_013820, intron 1 of 17)	10144.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	76.0	163.0	79.0	79.5	129.0	84.0
Merged-chr2-157367006-4	chr2	157366518	157367518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026968)	promoter-TSS (NM_026968)	-576.0	NM_026968	69161.0	Mm.228619	NM_026968	ENSMUSG00000063019	Manbal	1810024K12Rik|AI836500	mannosidase, beta A, lysosomal-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132155972-4	chr1	132155472	132156472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16287.0	NM_008795	18557.0	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123750362-4	chr4	123749869	123750869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023423)	promoter-TSS (NM_023423)	-70.0	NM_023423	68050.0	Mm.27903	NM_023423	ENSMUSG00000023075	Akirin1	6330407G11Rik	akirin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-53639026-4	chr8	53638522	53639522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146208)	promoter-TSS (NM_146208)	43.0	NM_146208	234258.0	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-49264039-4	chr6	49263546	49264546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347209)	promoter-TSS (NM_001347209)	6.0	NM_001347209	101214.0	Mm.196598	NM_198102	ENSMUSG00000029817	Tra2a	1500010G04Rik|AL022798|G430041M01Rik|mAWMS1	transformer 2 alpha	protein-coding	201.5	516.5	426.5	204.5	416.5	368.5
Merged-chr9-57557462-4	chr9	57556961	57557961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3483.0	NM_022813	24044.0	Mm.286069	NM_022813	ENSMUSG00000040188	Scamp2	AI875466|Sc2	secretory carrier membrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9955057-4	chr19	9954562	9955562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25538.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40661282-4	chr19	40660783	40661783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	1513.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-60916358-4	chr1	60915855	60916855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001281976)	TTS (NM_001281976)	7330.0	NM_001281976	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	2.0	2.0	0.5	0.0	3.5	1.5
Merged-chr2-129338440-4	chr2	129337939	129338939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28467.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	44.0	161.0	96.5	25.5	116.0	74.5
Merged-chr19-5848846-2	chr19	5848346	5849346	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3366.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99415226-4	chr5	99414740	99415740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-162313.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80711615-4	chr7	80711097	80712097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_016721)	TTS (NM_016721)	-22720.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	19.5	20.0	30.0	5.5	7.0	11.5
Merged-chr17-34121918-3	chr17	34121416	34122416	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010386)	promoter-TSS (NM_010386)	-169.0	NM_010238	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	20.5	34.5	21.5	16.0	18.5	35.0
Merged-chr5-115327109-4	chr5	115326620	115327620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025573)	promoter-TSS (NM_025573)	-57.0	NM_025573	108014.0	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34833675-4	chr11	34833182	34834182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027411)	promoter-TSS (NM_027411)	-41.0	NM_027411	70385.0	Mm.194368	NM_027411	ENSMUSG00000069910	Spdl1	1700018I02Rik|2600001J17Rik|2810049B11Rik|AA409762|Ccdc99	spindle apparatus coiled-coil protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44071293-4	chr10	44070795	44071795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66449.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88553011-4	chr3	88552508	88553508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033526)	promoter-TSS (NM_033526)	-57.0	NR_155541	83409.0	Mm.41680	NM_031248	ENSMUSG00000028062	Lamtor2	2010111E04Rik|AL022628|Mapbpip|P14|Rab25|Robld3	late endosomal/lysosomal adaptor, MAPK and MTOR activator 2	protein-coding	6.5	13.0	25.0	2.5	50.5	49.0
Merged-chr4-114986746-4	chr4	114986239	114987239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025647, intron 1 of 5)	CpG	489.0	NM_025647	66588.0	Mm.294159	NM_025647	ENSMUSG00000028719	Cmpk1	0610011D08Rik|CK|Cmpk|UMP-CMPk	cytidine monophosphate (UMP-CMP) kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66118652-2	chr7	66118152	66119152	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081163, intron 1 of 2)	intron (NM_001081163, intron 1 of 2)	9137.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191275819-4	chr1	191275304	191276304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER30|DNA|hAT-Charlie	42314.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63421443-2	chr4	63420943	63421943	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008792, intron 7 of 11)	L2b|LINE|L2	-17998.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121423115-4	chr14	121422597	121423597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43867.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35997160-4	chr17	35996659	35997659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015618, intron 1 of 1)	intron (NR_015618, intron 1 of 1)	2655.0	NR_015618	77810.0	Mm.483143	NR_015618		A930015D03Rik	-	RIKEN cDNA A930015D03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128698298-4	chr2	128697787	128698787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008587)	promoter-TSS (NM_008587)	-628.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0.0	12.0	4.5	0.0	3.5	2.0
Merged-chr19-42001415-4	chr19	42000917	42001917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	19654.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	39.0	113.5	92.5	49.5	116.0	89.0
Merged-chr14-98956945-3	chr14	98956441	98957441	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89195.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-104507895-4	chr7	104507360	104508360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167828)	promoter-TSS (NM_001167828)	-11.0	NM_001167828	209387.0	Mm.277377	NM_199146	ENSMUSG00000057596	Trim30d	AI451617|TRIM30-3|Trim79	tripartite motif-containing 30D	protein-coding	100.5	189.5	150.0	49.0	150.5	113.0
Merged-chr12-100199482-4	chr12	100198967	100199967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009790)	promoter-TSS (NM_009790)	32.0	NM_009790	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117519145-4	chr8	117518666	117519666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 2 of 32)	intron (NM_172285, intron 2 of 32)	20891.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102745394-4	chr2	102744908	102745908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153853, intron 1 of 1)	intron (NR_153853, intron 1 of 1)	1352.0	NR_153852	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	1.5	8.0	11.5	2.5	10.5	15.5
Merged-chr10-62556657-4	chr10	62556157	62557157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21800.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111094799-4	chr9	111094281	111095281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-23330.0	NM_027742	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135659693-4	chr1	135659195	135660195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60368.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120487986-5	chr8	120487537	120488537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198671)	promoter-TSS (NM_198671)	-829.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-162224972-4	chr1	162224457	162225457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_002870, exon 1 of 1)	non-coding (NR_002870, exon 1 of 1)	1589.0	NR_029796	387210.0		NR_029796	ENSMUSG00000065516	Mir214	Mirn214|mir-214|mmu-mir-214	microRNA 214	ncRNA	15.5	6.5	6.0	13.5	7.0	8.5
Merged-chr11-116012688-4	chr11	116012178	116013178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016905)	promoter-TSS (NM_016905)	41.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142367590-6	chr5	142367109	142368109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-33888.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-100287375-7	chr6	100286851	100287851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019743)	promoter-TSS (NM_019743)	7.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47767294-4	chr17	47766812	47767812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-18432.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	49.0	134.0	96.5	44.5	110.5	92.5
Merged-chr16-56029782-4	chr16	56029304	56030304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024622)	promoter-TSS (NM_001024622)	-87.0	NM_001356450	76302.0	Mm.310642	NM_001024622	ENSMUSG00000071533	Pcnp	1110018D06Rik|AI647035	PEST proteolytic signal containing nuclear protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86495056-4	chr17	86494557	86495557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 9 of 14)	intron (NM_011104, intron 9 of 14)	-207879.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	2.5	13.0	9.5	10.0	25.0	12.0
Merged-chr7-38271404-4	chr7	38270838	38271838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025390)	promoter-TSS (NM_025390)	10.0	NM_025390	66161.0	Mm.22284	NM_025390	ENSMUSG00000030423	Pop4	1110023P21Rik|Rpp29	processing of precursor 4, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	38.5	91.0	84.5	32.5	108.0	62.5
Merged-chr11-104442955-4	chr11	104442450	104443450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081045)	promoter-TSS (NM_001081045)	-659.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	4.0	43.0	17.5	3.5	22.0	22.0
Merged-chr5-113787915-2	chr5	113787415	113788415	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	12437.0	NM_146162	231633.0	Mm.41681	NM_146162	ENSMUSG00000054675	Tmem119	AW208946|BC025600|obif	transmembrane protein 119	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10842454-4	chr19	10841949	10842949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023044)	promoter-TSS (NM_023044)	-95.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71500056-4	chr2	71499582	71500582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025633, intron 1 of 9)	intron (NM_025633, intron 1 of 9)	-29363.0	NM_010053	13390.0	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43853441-4	chr5	43852925	43853925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15384.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	4.0	16.5	2.0	27.0	35.5	40.5
Merged-chr14-59365486-4	chr14	59364985	59365985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199015)	promoter-TSS (NM_199015)	5.0	NM_199015	219132.0	Mm.479285	NM_199015	ENSMUSG00000068245	Phf11d	D14Ertd668e|Phf11|Phf11l	PHD finger protein 11D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95548286-4	chr10	95547809	95548809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027722, exon 5 of 5)	3' UTR (NM_027722, exon 5 of 5)	11012.0	NR_037212	100526463.0		NR_037212	ENSMUSG00000092867	Mir3058	mir-3058|mmu-mir-3058	microRNA 3058	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-59119869-4	chr1	59119344	59120344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037812)	promoter-TSS (NM_001037812)	-38.0	NM_001037812	381259.0	Mm.261275	NM_001033449	ENSMUSG00000038079	Tmem237	AI853305|Als2cr4|Gm972	transmembrane protein 237	protein-coding	17.0	11.0	23.5	6.5	18.0	8.0
Merged-chr3-103916671-4	chr3	103916170	103917170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356557, intron 1 of 6)	intron (NM_001356557, intron 1 of 6)	2550.0	NM_172684	229675.0	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|KDM9|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	15.5	51.0	35.0	24.5	18.0	39.0
Merged-chr6-145274308-4	chr6	145273807	145274807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23755.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	24.5	58.5	59.0	11.5	28.5	38.5
Merged-chr1-189871772-3	chr1	189871170	189872170	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008976, exon 19 of 19)	3' UTR (NM_008976, exon 19 of 19)	50621.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	0.0	5.0	0.0	4.5	5.5	5.0
Merged-chr8-79370771-4	chr8	79370244	79371244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 2 of 6)	intron (NM_008539, intron 2 of 6)	28724.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69716529-4	chr8	69716024	69717024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001359086, exon 1 of 6)	5' UTR (NM_001359086, exon 1 of 6)	378.0	NM_001039967	66869.0	Mm.334581	NM_181274	ENSMUSG00000054648	Zfp869	1200003I07Rik	zinc finger protein 869	protein-coding	160.0	311.0	283.0	109.0	301.5	268.5
Merged-chr10-8759384-4	chr10	8758886	8759886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	126684.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	34.0	91.0	60.0	53.0	64.0	53.0
Merged-chr2-160366262-2	chr2	160365762	160366762	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010658, exon 1 of 1)	exon (NM_010658, exon 1 of 1)	803.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	12.0	21.0	25.0	14.5	49.5	12.5
Merged-chr10-17201296-4	chr10	17200786	17201786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105504.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	2.0	11.0	9.5	2.0	11.5	9.5
Merged-chr9-36726680-4	chr9	36726143	36727143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007691)	promoter-TSS (NM_007691)	15.0	NM_007691	12649.0	Mm.16753	NM_007691	ENSMUSG00000032113	Chek1	C85740|Chk1|rad27	checkpoint kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr2-164868652-4	chr2	164868164	164869164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-10704.0	NM_146129	228866.0	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	27.0	110.0	85.0	42.5	107.0	57.0
Merged-chr7-127233155-4	chr7	127232648	127233648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030674)	promoter-TSS (NR_030674)	-18.0	NR_030674	100043580.0	Mm.482209	NR_030674	ENSMUSG00000000486	Gm4532	-	predicted gene 4532	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4501772-4	chr7	4501280	4502280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029834)	promoter-TSS (NM_029834)	-100.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120820418-4	chr6	120819918	120820918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007510, intron 1 of 8)	intron (NM_007510, intron 1 of 8)	2280.0	NM_007510	11973.0	Mm.29045	NM_007510	ENSMUSG00000019210	Atp6v1e1	2410029D23Rik|Atp6e|Atp6e2|Atp6v1e|D6Ertd385e|Vma4|p31	ATPase, H+ transporting, lysosomal V1 subunit E1	protein-coding	3.0	14.0	8.0	5.5	16.5	7.0
Merged-chr11-85235059-4	chr11	85234526	85235526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025825)	promoter-TSS (NM_025825)	94.0	NM_025825	66884.0	Mm.271997	NM_025825	ENSMUSG00000018481	Appbp2	1300003O07Rik|AI465480|PAT1	amyloid beta precursor protein (cytoplasmic tail) binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-12533114-4	chr4	12532620	12533620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-361105.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-13871540-4	chr6	13871055	13872055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001352887)	promoter-TSS (NM_001352887)	-14.0	NR_045995	76311.0	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158596996-4	chr2	158596504	158597504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040359, intron 2 of 2)	intron (NR_040359, intron 2 of 2)	13719.0	NR_040358	100045469.0	Mm.143404	NR_040358	ENSMUSG00000086496	Gm14204	-	predicted gene 14204	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125023289-2	chr5	125022789	125023789	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011424, intron 43 of 46)	intron (NM_011424, intron 43 of 46)	19814.0	NM_028443	73121.0	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	0.0	0.0	2.0	0.0	0.0	2.0
Merged-chr3-90514411-4	chr3	90513925	90514925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011309)	promoter-TSS (NM_011309)	-10.0	NM_009113	20196.0	Mm.6523	NM_009113	ENSMUSG00000042312	S100a13	-	S100 calcium binding protein A13	protein-coding	7.5	27.5	9.5	9.0	7.5	4.5
Merged-chr7-45589326-4	chr7	45588809	45589809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009737, exon 11 of 11)	exon (NM_009737, exon 11 of 11)	-14133.0	NR_038165	71661.0	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12024351-4	chr19	12023840	12024840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12400.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-41006927-4	chr8	41006404	41007404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 7 of 13)	intron (NM_001005863, intron 7 of 13)	-10564.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	172.0	250.5	216.0	151.5	261.5	153.0
Merged-chr7-101896314-4	chr7	101895838	101896838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027532)	promoter-TSS (NM_027532)	7.0	NM_001291349	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-150592695-4	chr5	150592166	150593166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133898, intron 1 of 4)	intron (NM_133898, intron 1 of 4)	1859.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150076429-4	chr4	150075890	150076890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	7936.0	NR_029751	723848.0		NR_029751	ENSMUSG00000065493	Mir34a	Mirn34a|mir-34a|mmu-mir-34a	microRNA 34a	ncRNA	0.0	2.0	0.5	0.0	0.0	1.0
Merged-chr13-56184496-4	chr13	56184022	56185022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5637.0	NM_001168615	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	37.0	81.0	49.0	47.0	100.5	59.0
Merged-chr1-72254788-4	chr1	72254234	72255234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155355, intron 1 of 3)	intron (NR_155355, intron 1 of 3)	10741.0	NR_155355	320933.0	Mm.440953	NR_155355		D230017M19Rik	B930094L07Rik	RIKEN cDNA D230017M19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117254124-4	chr4	117253627	117254627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029589, intron 2 of 3)	intron (NM_029589, intron 2 of 3)	1787.0	NM_029589	68777.0	Mm.331805	NM_026837	ENSMUSG00000048772	Tmem53	1110038M16Rik|1500001P22Rik|1700012A05Rik	transmembrane protein 53	protein-coding	8.5	0.5	4.5	0.0	21.0	5.0
Merged-chr11-86818889-2	chr11	86818389	86819389	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	-11229.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80334297-4	chr12	80333846	80334846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57331.0	NR_037207	100526530.0		NR_037207	ENSMUSG00000105972	Mir1843a	Mir1843|mir-1843a|mmu-mir-1843|mmu-mir-1843a	microRNA 1843a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-76902176-4	chr8	76901661	76902661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083906)	promoter-TSS (NM_001083906)	-347.0	NM_001083906	110784.0	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45255919-2	chr9	45255419	45256419	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008348, exon 7 of 7)	exon (NM_008348, exon 7 of 7)	10788.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-48700405-4	chr6	48699889	48700889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7855.0	NM_153175	231931.0	Mm.321047	NM_153175	ENSMUSG00000047867	Gimap6	4833419H03Rik|Ian6|mFLJ00102	GTPase, IMAP family member 6	protein-coding	6.5	8.5	1.0	0.0	0.0	0.5
Merged-chr8-61487873-4	chr8	61487372	61488372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145595, exon 1 of 5)	exon (NM_145595, exon 1 of 5)	138.0	NM_145595	234309.0	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6818027-2	chr19	6817527	6818527	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	11917.0	NR_039555	100628576.0		NR_039555	ENSMUSG00000104884	Mir5046	mmu-mir-5046|mu-mir-5046	microRNA 5046	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-116504938-4	chr8	116504448	116505448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029297)	promoter-TSS (NM_029297)	-67.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119437632-2	chr8	119437132	119438132	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027950, intron 1 of 5)	intron (NM_027950, intron 1 of 5)	470.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184444356-4	chr1	184443824	184444824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	113367.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109365053-4	chr11	109364567	109365567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359034, intron 1 of 2)	intron (NM_001359034, intron 1 of 2)	-1413.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	58.0	155.0	126.0	38.5	105.5	101.5
Merged-chr19-29361881-4	chr19	29361382	29362382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026362)	promoter-TSS (NM_026362)	-11.0	NM_026362	67759.0	Mm.275511	NM_026362	ENSMUSG00000016495	Plgrkt	1110007H22Rik|5033414D02Rik|AI852040|Plg-R(KT)|Plg-RKT	plasminogen receptor, C-terminal lysine transmembrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-13981472-4	chr14	13980962	13981962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19610.0	NM_001359901	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	16.5	17.5	16.0	0.0	14.5	22.5
Merged-chr6-31078590-4	chr6	31078085	31079085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15492.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133968074-4	chr4	133967583	133968583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016957)	promoter-TSS (NM_016957)	-92.0	NM_016957	15331.0	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	3.0	5.0	18.5	7.0	15.5	10.5
Merged-chr11-120185958-2	chr11	120185458	120186458	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_030682)	TTS (NR_030682)	3898.0	NR_030682	100042332.0	Mm.269766	NR_030682		2810410L24Rik	-	RIKEN cDNA 2810410L24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93635818-4	chr1	93635317	93636317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021537)	promoter-TSS (NM_021537)	-90.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	14.5	25.0	20.0	11.5	20.5	10.0
Merged-chr12-85284425-4	chr12	85283927	85284927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3992.0	NM_025421	66204.0	Mm.311985	NM_025421	ENSMUSG00000008822	Acyp1	1110039O14Rik|AI325944	acylphosphatase 1, erythrocyte (common) type	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99653622-2	chr15	99653122	99654122	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1966.0	NM_001253809	26934.0	Mm.273804	NM_012025	ENSMUSG00000023015	Racgap1	AI227039|AI327394|Band25|GTPase|MgcRacGAP|gtl11|mKIAA1478	Rac GTPase-activating protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40244721-4	chr10	40244221	40245221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023323, intron 1 of 9)	intron (NM_023323, intron 1 of 9)	2258.0	NM_001042556	67239.0	Mm.11480	NM_023323	ENSMUSG00000038510	Rpf2	2810470K21Rik|AU040229|AU043242|Bxdc1	ribosome production factor 2 homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-144554987-2	chr7	144554487	144555487	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1258.0	NM_001195086	233977.0	Mm.490347	NM_001033319	ENSMUSG00000037519	Ppfia1	C030014K08Rik|C87158|LIP.1|LIP1	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68706678-4	chr11	68706186	68707186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175260, intron 2 of 40)	Charlie1a|DNA|hAT-Charlie	14771.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13299386-4	chr9	13298883	13299883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52427.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-11657364-4	chr18	11656861	11657861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045526)	promoter-TSS (NR_045526)	12.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	71.5	225.0	141.5	91.0	209.5	138.0
Merged-chr4-126019193-4	chr4	126018700	126019700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5459.0	NR_045561	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70618279-4	chr14	70617751	70618751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001252663, exon 2 of 14)	exon (NM_001252663, exon 2 of 14)	318.0	NM_001252666	13829.0	Mm.210863	NM_013514	ENSMUSG00000022099	Dmtn	AI325486|Epb4.9|Epb49|dematin	dematin actin binding protein	protein-coding	6.5	0.0	8.0	1.0	10.5	3.0
Merged-chr1-37903298-4	chr1	37902780	37903780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12803.0	NM_027098	107734.0	Mm.26614	NM_027098	ENSMUSG00000026087	Mrpl30	2310001L22Rik|L30mt|MRP-L28|MRP-L30|Rpml28	mitochondrial ribosomal protein L30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-23208905-2	chr8	23208418	23209418	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_018743)	promoter-TSS (NM_018743)	-465.0	NM_018743	102247.0	Mm.200898	NM_018743	ENSMUSG00000031545	Gpat4	AU041707|AW545732|Agpat6|Tsarg7	glycerol-3-phosphate acyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-112448276-4	chr2	112447773	112448773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-6752.0	NM_133749	73024.0	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81277469-2	chr10	81276969	81277969	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013769, intron 13 of 20)	intron (NM_013769, intron 13 of 20)	5872.0	NR_037218	100526465.0		NR_037218	ENSMUSG00000092781	Mir3057	mir-3057|mmu-mir-3057	microRNA 3057	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25606732-4	chr15	25606235	25607235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15815.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134518780-4	chr1	134518279	134519279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24119.0	NM_145510	98710.0	Mm.198119	NM_145510	ENSMUSG00000042229	Rabif	AI842864|AW549708|E130318E12Rik|MSS4|RASGFR3	RAB interacting factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180587971-4	chr1	180587455	180588455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_105869)	TTS (NR_105869)	754.0	NR_105869	102466761.0		NR_105869	ENSMUSG00000098926	Mir6904	Gm27426|mmu-mir-6904	microRNA 6904	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25835093-4	chr15	25834589	25835589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8209.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-54586405-4	chr9	54585909	54586909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029573)	promoter-TSS (NM_029573)	-102.0	NM_029573	67834.0	Mm.279195	NM_029573	ENSMUSG00000032279	Idh3a	1110003P10Rik|1500012E04Rik|AA407078|AI316514	isocitrate dehydrogenase 3 (NAD+) alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3284037-4	chr2	3283539	3284539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290370)	promoter-TSS (NM_001290370)	-173.0	NM_008708	18108.0	Mm.65021	NM_008708	ENSMUSG00000026643	Nmt2	A930001K02Rik|AI605445|AU044698|hNMT-2	N-myristoyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80057567-4	chr7	80057063	80058063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	17694.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	11.5	40.0	38.0	26.5	37.0	25.5
Merged-chr11-52097664-2	chr11	52097164	52098164	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1160.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153015419-4	chr2	153014892	153015892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178939)	promoter-TSS (NM_178939)	-9.0	NM_178939	68559.0	Mm.12746	NM_178939	ENSMUSG00000027472	Pdrg1	1110004D19Rik|AU020945|AV006589|Pdrg	p53 and DNA damage regulated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-66220557-4	chr17	66220063	66221063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97043.0	NM_001348292	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-16553483-4	chr5	16552991	16553991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010427)	promoter-TSS (NM_010427)	-4.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127422230-4	chr10	127421722	127422722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359246, intron 1 of 23)	intron (NM_001359246, intron 1 of 23)	1355.0	NM_001359243	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	7.5	6.0	3.5	4.0	10.5	5.0
Merged-chr5-151211063-4	chr5	151210551	151211551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20858.0	NR_153382	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22972935-4	chr11	22972364	22973364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361661)	promoter-TSS (NM_001361661)	2.0	NM_001361661	17846.0	Mm.259903	NM_144514	ENSMUSG00000051355	Commd1	AI256843|Murr1|U2/Mu	COMM domain containing 1	protein-coding	47.5	108.5	98.5	0.0	7.0	3.0
Merged-chr11-93729333-4	chr11	93728829	93729829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	156437.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126869132-4	chr8	126868619	126869619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	20099.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122644401-4	chr14	122643904	122644904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 8 of 24)	ORR1B2|LTR|ERVL-MaLR	110076.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11431402-4	chr19	11430921	11431921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12137.0	NM_021718	60361.0	Mm.33957	NM_021718	ENSMUSG00000056290	Ms4a4b	AI463180|Chandra|Ly116	membrane-spanning 4-domains, subfamily A, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123863368-4	chr9	123862876	123863876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1347.0	NM_011798	23832.0	Mm.390241	NM_011798	ENSMUSG00000060509	Xcr1	Ccxcr1|Gpr5|mXcr1	chemokine (C motif) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121804385-4	chr11	121803890	121804890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25828.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84019210-4	chr12	84018738	84019738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9736.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12818666-4	chr19	12818161	12819161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134152, intron 3 of 8)	L1MA9|LINE|L1	20082.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	18.0	27.0	17.5	12.0	19.5	19.5
Merged-chr7-115063129-3	chr7	115062619	115063619	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111845.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	4.0	1.0	1.0	8.0	19.5	9.5
Merged-chr17-42883124-4	chr17	42882620	42883620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6696.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	21.0	19.5	21.0	25.0	22.0	27.0
Merged-chr5-64230313-4	chr5	64229814	64230814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289514)	promoter-TSS (NM_001289514)	-43.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97458184-4	chr6	97457687	97458687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	1099.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	135.0	431.5	259.0	110.0	286.0	215.5
Merged-chr2-160019125-4	chr2	160018604	160019604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040499, intron 1 of 3)	intron (NR_040499, intron 1 of 3)	2451.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27042958-4	chr17	27042461	27043461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13702.0	NM_027544	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122309893-4	chr6	122309381	122310381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010749, intron 1 of 6)	intron (NM_010749, intron 1 of 6)	1161.0	NM_010749	17113.0	Mm.249225	NM_010749	ENSMUSG00000007458	M6pr	CD-MPR|Mpr46	mannose-6-phosphate receptor, cation dependent	protein-coding	54.5	107.0	113.0	34.5	154.5	68.0
Merged-chr3-90509903-1	chr3	90509403	90510403	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_001293781)	promoter-TSS (NM_001293781)	-405.0	NM_001293778	66511.0	Mm.154136	NM_023215	ENSMUSG00000001017	Chtop	2500003M10Rik|Fop|Srag	chromatin target of PRMT1	protein-coding	19.0	78.5	36.5	29.0	91.5	37.5
Merged-chr12-102439222-3	chr12	102438752	102439752	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	intron (NM_011175, intron 1 of 13)	561.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	50.0	99.5	82.5	69.0	103.5	107.0
Merged-chr19-17394007-4	chr19	17393493	17394493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019437)	promoter-TSS (NM_019437)	-50.0	NM_019437	54391.0	Mm.7013	NM_019437	ENSMUSG00000024712	Rfk	0610038L10Rik|AF031381|KOI-4	riboflavin kinase	protein-coding	3.0	3.0	5.5	1.0	5.5	1.0
Merged-chr2-28496879-4	chr2	28496381	28497381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139197)	promoter-TSS (NM_139197)	-10.0	NM_139197	227671.0	Mm.484270	NM_139197	ENSMUSG00000026829	Gbgt1	Fgs|Fs	globoside alpha-1,3-N-acetylgalactosaminyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150830684-2	chr2	150830184	150831184	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153781, exon 20 of 20)	3' UTR (NM_153781, exon 20 of 20)	11886.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71922815-4	chr8	71922316	71923316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133358)	promoter-TSS (NM_133358)	-9.0	NM_133358	170938.0	Mm.480419	NM_133358	ENSMUSG00000066880	Zfp617	Zfps11-6	zinc finger protein 617	protein-coding	40.5	151.5	107.5	41.5	212.5	122.5
Merged-chr2-62656279-4	chr2	62655773	62656773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-8054.0	NM_145523	227960.0	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98746908-4	chr12	98746421	98747421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160107)	promoter-TSS (NM_001160107)	-47.0	NM_001160107	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128654942-4	chr8	128654448	128655448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30706.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	3.0	20.5	9.0	6.5	7.5	12.5
Merged-chr10-99090077-4	chr10	99089582	99090582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17000.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65537796-4	chr5	65537287	65538287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310618, intron 1 of 4)	CpG	542.0	NM_001310619	53323.0	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-177258537-4	chr1	177258036	177259036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9769.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	26.5	66.0	75.0	64.0	94.0	80.5
Merged-chr7-83858162-4	chr7	83857640	83858640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME3A|LINE|L1	26201.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	9.0	13.5	1.0	4.0	10.0	15.0
Merged-chr9-22003329-2	chr9	22002829	22003829	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029939)	promoter-TSS (NM_029939)	341.0	NM_001293650	19089.0	Mm.214593	NM_008925	ENSMUSG00000003402	Prkcsh	80K-H|PKCSH	protein kinase C substrate 80K-H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98915035-4	chr10	98914545	98915545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026482)	promoter-TSS (NM_026482)	-107.0	NM_001359507	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115544223-1	chr5	115543723	115544723	+	1000.0	f1_balb.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	-15244.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	5.0	11.0	7.5	7.0	1.5	1.5
Merged-chr14-32159346-3	chr14	32158840	32159840	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033988)	promoter-TSS (NM_001033988)	-547.0	NM_001033988	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29728114-4	chr11	29727606	29728606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024226, intron 1 of 6)	intron (NM_024226, intron 1 of 6)	9543.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	6.5	18.0	14.0	5.0	21.0	16.0
Merged-chr15-94545655-2	chr15	94545155	94546155	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029926, intron 1 of 11)	RLTR42-int|LTR|ERVK	1995.0	NM_029926	266632.0	Mm.422858	NM_029926	ENSMUSG00000059883	Irak4	8430405M07Rik|9330209D03Rik|IRAK-4|NY-REN-64	interleukin-1 receptor-associated kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137628094-4	chr5	137627614	137628614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1009.0	NM_001168652	231798.0	Mm.200763	NM_146164	ENSMUSG00000093445	Lrch4	2810008P14Rik|2900069C24Rik|AI558103|LRN|LRRN4|SAP25|mFLJ00248	leucine-rich repeats and calponin homology (CH) domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63083215-2	chr14	63082715	63083715	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	28142.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-80081158-4	chr9	80080656	80081656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311110, intron 1 of 23)	ORR1E|LTR|ERVL-MaLR	14253.0	NM_146003	215351.0	Mm.28232	NM_146003	ENSMUSG00000034252	Senp6	2810017C20Rik|E130319N12Rik|Susp1|mKIAA0797	SUMO/sentrin specific peptidase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119195340-4	chr4	119194833	119195833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024462)	promoter-TSS (NM_024462)	23.0	NM_024462	69216.0	Mm.36697	NM_024462	ENSMUSG00000028643	Svbp	2410005K17Rik|AI851162|Ccdc23	small vasohibin binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115555782-4	chr6	115555274	115556274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199033, intron 4 of 11)	intron (NM_199033, intron 4 of 11)	11070.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66106140-4	chr5	66105624	66106624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-7945.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	57.5	148.5	107.5	53.5	134.5	93.5
Merged-chr9-35113484-2	chr9	35112984	35113984	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-3244.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73445677-4	chr14	73445194	73446194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60405.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31183125-4	chr14	31182628	31183628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347583)	TTS (NM_001347583)	-14487.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-36029500-4	chr12	36029039	36030039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025359, intron 1 of 5)	intron (NM_025359, intron 1 of 5)	12939.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	75.5	108.0	97.0	49.0	111.0	105.5
Merged-chr16-96128021-4	chr16	96127480	96128480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008251)	promoter-TSS (NM_008251)	-255.0	NM_008251	15312.0	Mm.2756	NM_008251	ENSMUSG00000040681	Hmgn1	HMG-14|Hmg14	high mobility group nucleosomal binding domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-13867130-4	chr17	13866644	13867644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151731, intron 22 of 33)	intron (NR_151731, intron 22 of 33)	-81229.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119288636-4	chr2	119288144	119289144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172269)	promoter-TSS (NM_172269)	-98.0	NM_172269	228545.0	Mm.294761	NM_172269	ENSMUSG00000034216	Vps18	9930024E13Rik	VPS18 CORVET/HOPS core subunit	protein-coding	256.0	491.5	335.0	176.5	385.0	331.0
Merged-chr1-120033251-4	chr1	120032757	120033757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012322, intron 4 of 13)	intron (NM_001012322, intron 4 of 13)	26277.0	NM_001012322	319229.0	Mm.189223	NM_001012322	ENSMUSG00000026387	Sctr	6530402O03Rik	secretin receptor	protein-coding	16.0	54.5	12.0	6.5	16.5	8.0
Merged-chr1-185203300-4	chr1	185202813	185203813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163754)	promoter-TSS (NM_001163754)	-855.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	218.5	317.0	259.0	75.0	115.5	108.0
Merged-chr1-177681396-4	chr1	177680901	177681901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38458.0	NR_037994	75589.0	Mm.86666	NR_037994	ENSMUSG00000101746	2310043L19Rik	-	RIKEN cDNA 2310043L19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100527998-4	chr11	100527489	100528489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199296)	promoter-TSS (NM_001199296)	11.0	NM_134037	104112.0	Mm.282039	NM_134037	ENSMUSG00000020917	Acly	A730098H14Rik|AW538652	ATP citrate lyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31052631-4	chr2	31052131	31053131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019406)	TTS (NM_019406)	43869.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29542411-2	chr6	29541911	29542911	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001311083)	TTS (NM_001311083)	13129.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111798184-4	chr13	111797717	111798717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	10776.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	16.5	44.5	27.5	16.0	30.5	28.0
Merged-chr8-94837352-2	chr8	94836840	94837840	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134141, intron 1 of 8)	RSINE1|SINE|B4	1000.0	NM_134141	109006.0	Mm.27582	NM_134141	ENSMUSG00000031781	Ciapin1	2810413N20Rik|AA617265|AU021794|anamorsin	cytokine induced apoptosis inhibitor 1	protein-coding	10.5	11.0	2.0	4.5	10.5	8.0
Merged-chr11-69586074-4	chr11	69585550	69586550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127233, intron 1 of 10)	intron (NM_001127233, intron 1 of 10)	5691.0	NM_001127233	22059.0	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50785524-4	chr14	50785003	50786003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177625)	promoter-TSS (NM_177625)	17.0	NM_177625	219022.0	Mm.276362	NM_177625	ENSMUSG00000006288	Ttc5	-	tetratricopeptide repeat domain 5	protein-coding	20.5	23.5	12.0	8.5	13.0	9.0
Merged-chr8-40584820-4	chr8	40584327	40585327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040699, intron 6 of 13)	intron (NM_001040699, intron 6 of 13)	49965.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	5.5	16.5	21.0	12.0	2.5	9.5
Merged-chr10-5825038-4	chr10	5824538	5825538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019958)	TTS (NM_019958)	-1095.0	NM_175374	108853.0	Mm.55082	NM_175374	ENSMUSG00000019774	Mtrf1l	9130004K12Rik	mitochondrial translational release factor 1-like	protein-coding	6.5	49.5	11.5	9.5	13.5	7.5
Merged-chr8-41373932-4	chr8	41373442	41374442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019734, intron 1 of 13)	intron (NM_019734, intron 1 of 13)	755.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	65.0	155.5	151.0	94.5	162.5	135.0
Merged-chr5-62846921-4	chr5	62846436	62847436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 6 of 8)	intron (NM_001170705, intron 6 of 8)	33113.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	33.0	85.0	51.5	38.0	114.5	102.5
Merged-chr12-79132339-4	chr12	79131848	79132848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009705, intron 2 of 7)	intron (NM_009705, intron 2 of 7)	1560.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	0.0	7.5	1.5	6.0	13.5	13.5
Merged-chr3-90268456-2	chr3	90267956	90268956	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_201407, exon 3 of 28)	exon (NM_201407, exon 3 of 28)	-1693.0	NR_105979	102465612.0		NR_105979	ENSMUSG00000099199	Mir7012	Gm27370|mmu-mir-7012	microRNA 7012	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35495048-4	chr8	35494517	35495517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026067, intron 1 of 6)	CpG	516.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	84.5	220.0	232.0	37.0	85.0	48.5
Merged-chr14-33813506-4	chr14	33813009	33814009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2226.0	NR_131113	218902.0	Mm.107791	NR_131113	ENSMUSG00000115751	4930503F20Rik	4930453C15	RIKEN cDNA 4930503F20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142387945-4	chr7	142387439	142388439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009983)	promoter-TSS (NM_009983)	-69.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	32.0	60.0	45.0	33.0	61.0	44.0
Merged-chr2-91206800-3	chr2	91206295	91207295	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007387, exon 7 of 11)	exon (NM_007387, exon 7 of 11)	3883.0	NM_007387	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-38960460-4	chr13	38959928	38960928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131019)	promoter-TSS (NR_131019)	109.0	NM_001170430	108652.0	Mm.255506	NM_134060	ENSMUSG00000021432	Slc35b3	4921526O06Rik|AI428480|CGI-19|PABST2|PAPST2	solute carrier family 35, member B3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-8485621-2	chr6	8485121	8486121	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23540.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142344895-3	chr7	142344391	142345391	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177265, intron 3 of 3)	L1MD|LINE|L1	27368.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	4.5	14.0	17.0	0.0	2.0	2.0
Merged-chr17-43553978-3	chr17	43553462	43554462	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-10323.0	NM_001254953	100043332.0	Mm.17626	NM_001254953	ENSMUSG00000096140	Ankrd66	AU041848|D730048J04Rik|Gm4368	ankyrin repeat domain 66	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96670188-4	chr3	96669676	96670676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081139)	promoter-TSS (NM_001081139)	45.0	NM_001356540	213121.0	Mm.39732	NM_001081139	ENSMUSG00000038354	Ankrd35	4732436F15Rik	ankyrin repeat domain 35	protein-coding	6.5	7.0	4.5	5.5	11.0	9.0
Merged-chr7-145109228-2	chr7	145108728	145109728	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98891.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	8.5	3.0	10.5	3.5	0.0	2.0
Merged-chr8-70797129-4	chr8	70796652	70797652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106099)	promoter-TSS (NR_106099)	-983.0	NR_106099	102466823.0		NR_106099	ENSMUSG00000099031	Mir7240	Gm27487|mmu-mir-7240	microRNA 7240	ncRNA	0.5	8.5	3.0	2.5	3.0	2.0
Merged-chr2-120128767-4	chr2	120128260	120129260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 2 of 5)	intron (NM_133838, intron 2 of 5)	25815.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-48878025-2	chr13	48877525	48878525	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7140.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96631565-4	chr9	96631058	96632058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053268)	promoter-TSS (NM_053268)	-55.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	50.5	63.0	90.5	55.0	64.0	100.0
Merged-chr6-97457392-4	chr6	97456881	97457881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	1905.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	378.5	1053.0	693.5	375.5	933.5	674.0
Merged-chr8-46935071-4	chr8	46934564	46935564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51823.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-28750047-1	chr12	28749547	28750547	+	1000.0	f1_c57bl6.idr	intron (NM_001161410, intron 1 of 11)	intron (NM_001161410, intron 1 of 11)	347.0	NM_001161410	217449.0	Mm.132006	NM_178811	ENSMUSG00000020628	Trappc12	CGI-87|D930014A20Rik|Ttc15	trafficking protein particle complex 12	protein-coding	101.5	279.0	225.0	89.0	273.0	208.5
Merged-chr10-78426567-4	chr10	78426079	78427079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007793, intron 1 of 2)	intron (NM_007793, intron 1 of 2)	909.0	NM_007793	13014.0	Mm.6095	NM_007793	ENSMUSG00000005054	Cstb	AA960480|Stfb	cystatin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114258916-4	chr6	114258434	114259434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23701.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163602293-4	chr2	163601785	163602785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181734)	promoter-TSS (NM_181734)	-29.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84075336-2	chr17	84074836	84075836	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3324.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60743832-2	chr13	60743332	60744332	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 19 of 26)	intron (NM_134062, intron 19 of 26)	42532.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89164795-4	chr3	89164296	89165296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007712)	promoter-TSS (NM_007712)	1.0	NM_001163432	12748.0	Mm.288098	NM_007712	ENSMUSG00000068917	Clk2	AU041688	CDC-like kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-19055647-4	chr2	19055153	19056153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57334.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3660140-4	chr4	3659632	3660632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040643, intron 3 of 3)	intron (NR_040643, intron 3 of 3)	3626.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	34.5	75.0	43.0	34.0	55.0	35.5
Merged-chr12-85424051-4	chr12	85423544	85424544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49327.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56125143-2	chr17	56124643	56125643	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130456, intron 16 of 16)	intron (NM_001130456, intron 16 of 16)	-3197.0	NM_029796	76905.0	Mm.348025	NM_029796	ENSMUSG00000037095	Lrg1	1300008B03Rik|2310031E04Rik|Lrg|Lrhg	leucine-rich alpha-2-glycoprotein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100202042-4	chr12	100201561	100202561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313934, intron 1 of 5)	AmnSINE1|SINE|Deu	1917.0	NM_001313934	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58478078-4	chr13	58477584	58478584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-74741.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76243765-4	chr11	76243277	76244277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026029)	promoter-TSS (NM_026029)	41.0	NM_183263	67390.0	Mm.24886	NM_183263	ENSMUSG00000038046	Mrm3	4833420N02Rik|AI255153|HC90|Rnmtl1	mitochondrial rRNA methyltransferase 3	protein-coding	41.5	65.0	43.5	41.5	85.0	55.5
Merged-chr19-37434753-4	chr19	37434223	37435223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008245)	promoter-TSS (NM_008245)	-118.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128616083-2	chr10	128615583	128616583	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	10423.0	NM_013765	27370.0	Mm.32118	NM_013765	ENSMUSG00000025362	Rps26	-	ribosomal protein S26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106322026-2	chr1	106321526	106322526	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 4 of 16)	intron (NM_133821, intron 4 of 16)	150157.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-44976595-4	chr2	44976097	44977097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	46580.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-30303992-2	chr6	30303477	30304477	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_009459, intron 1 of 6)	CpG	562.0	NM_009459	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-66186348-2	chr2	66185848	66186848	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001047604, intron 27 of 28)	intron (NM_001047604, intron 27 of 28)	-61555.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-104370318-4	chr7	104369805	104370805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11659.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	67.0	97.0	129.0	49.0	177.0	116.0
Merged-chr8-53434449-4	chr8	53433976	53434976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-77226.0	NM_001205054	11593.0	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-71179495-4	chr9	71178999	71179999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110517, intron 5 of 5)	MIR|SINE|MIR	10723.0	NR_110517	102635087.0	Mm.444536	NR_110517	ENSMUSG00000111429	Gm32511	-	predicted gene, 32511	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87561749-4	chr3	87561257	87562257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36179.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	21.5	59.0	47.5	59.5	68.0	66.5
Merged-chr4-116821650-4	chr4	116821167	116822167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146256)	promoter-TSS (NM_146256)	-159.0	NM_146256	242642.0	Mm.279897	NM_146256	ENSMUSG00000043155	Hpdl	A830048M07Rik|BC034099|Gloxd1	4-hydroxyphenylpyruvate dioxygenase-like	protein-coding	5.5	0.0	7.5	0.5	7.5	8.5
Merged-chr9-106247894-4	chr9	106247374	106248374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291835)	promoter-TSS (NM_001291835)	80.0	NM_020559	11655.0	Mm.290578	NM_020559	ENSMUSG00000032786	Alas1	ALAS|ALAS-N|Alas-1|Alas-h	aminolevulinic acid synthase 1	protein-coding	30.0	27.0	25.0	16.5	28.5	55.0
Merged-chr4-46138640-4	chr4	46138174	46139174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173033)	promoter-TSS (NM_173033)	35.0	NM_001355376	272027.0	Mm.249594	NM_173033	ENSMUSG00000035495	Tstd2	3010020C06	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	protein-coding	56.0	149.5	148.0	27.0	124.0	93.0
Merged-chr5-137307689-4	chr5	137307153	137308153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031405)	promoter-TSS (NM_031405)	21.0	NM_031405	83701.0	Mm.387734	NM_031405	ENSMUSG00000037364	Srrt	2810019G02Rik|ASR2A|ASR2B|ASR2C|ASR2D|Ars2|Asr2	serrate RNA effector molecule homolog (Arabidopsis)	protein-coding	2.5	8.0	2.5	4.0	5.5	10.0
Merged-chr8-105937106-4	chr8	105936596	105937596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013640, intron 4 of 7)	intron (NM_013640, intron 4 of 7)	1296.0	NM_013640	19171.0	Mm.787	NM_013640	ENSMUSG00000031897	Psmb10	Mecl-1|Mecl1	proteasome (prosome, macropain) subunit, beta type 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76179715-4	chr11	76179209	76180209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026664)	promoter-TSS (NM_026664)	-79.0	NM_026664	68299.0	Mm.46397	NM_026664	ENSMUSG00000017288	Vps53	2010002A08Rik|2310040I21Rik|3100002B05Rik|Hccs1	VPS53 GARP complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36129350-4	chr1	36128853	36129853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14960.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-177983256-4	chr1	177982773	177983773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-8125.0	NR_155538	545391.0	Mm.442974	NM_001034899	ENSMUSG00000091476	Gm16432	EG545391|EG666250	predicted gene 16432	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-83554001-4	chr9	83553494	83554494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	5656.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	19.0	38.0	15.0	17.0	9.5	16.5
Merged-chr7-141447272-4	chr7	141446773	141447773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360657)	promoter-TSS (NM_001360657)	-378.0	NM_026020	67186.0	Mm.380435	NM_026020	ENSMUSG00000025508	Rplp2	2700049I22Rik	ribosomal protein, large P2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38520102-4	chr2	38519622	38520622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159631, intron 1 of 9)	intron (NM_001159631, intron 1 of 9)	8246.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6478498-4	chr2	6477994	6478994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125758.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122823612-4	chr7	122823109	122824109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146850.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171328241-2	chr1	171327741	171328741	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011615)	promoter-TSS (NM_011615)	-567.0	NM_001357550	21945.0	Mm.270139	NM_011615	ENSMUSG00000013973	Dedd	CASP8IP1|DEFT|Dedpro1|FLDED1|KE05	death effector domain-containing	protein-coding	81.0	262.5	159.0	46.0	104.0	64.0
Merged-chr6-113714507-4	chr6	113714012	113715012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3180.0	NR_138135	58991.0	Mm.379095	NM_021488	ENSMUSG00000064177	Ghrl	2210006E23Rik|Ghr|MTLRP|MTLRPAP|m46	ghrelin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62648436-2	chr11	62647936	62648936	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198861)	promoter-TSS (NM_198861)	87.0	NM_198861	192976.0	Mm.339972	NM_198861	ENSMUSG00000046417	Lrrc75a	Fam211a	leucine rich repeat containing 75A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102751580-2	chr2	102751080	102752080	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077514, intron 6 of 10)	MER31A|LTR|ERV1	-4820.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-48547468-4	chr9	48546968	48547968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52125.0	NM_001004191	434402.0	Mm.386950	NM_001004191	ENSMUSG00000042293	Gm5617	EG434402	predicted gene 5617	protein-coding	27.0	68.0	73.5	18.0	76.0	23.5
Merged-chr5-135714128-2	chr5	135713628	135714628	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 1 of 15)	Tigger5b|DNA|TcMar-Tigger	21761.0	NR_106001	102466791.0		NR_106001	ENSMUSG00000099197	Mir7034	Gm27372|mmu-mir-7034	microRNA 7034	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116603356-4	chr7	116602847	116603847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C-int|LTR|ERVK	98978.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48409885-4	chr17	48409401	48410401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357904)	promoter-TSS (NM_001357904)	-81.0	NM_010913	18044.0	Mm.4929	NM_010913	ENSMUSG00000023994	Nfya	AA407810|Cbf-b|SEZ-10|SEZ10	nuclear transcription factor-Y alpha	protein-coding	13.5	72.0	53.0	17.5	53.5	51.0
Merged-chr11-101008286-4	chr11	101007796	101008796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1156.0	NM_016920	11975.0	Mm.340818	NM_016920	ENSMUSG00000019302	Atp6v0a1	AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1	ATPase, H+ transporting, lysosomal V0 subunit A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76671575-4	chr15	76671067	76672067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358933)	promoter-TSS (NM_001358933)	-76.0	NM_001358933	73062.0	Mm.322901	NM_033371	ENSMUSG00000033819	Ppp1r16a	2900084E10Rik|Mypt3|R75527	protein phosphatase 1, regulatory (inhibitor) subunit 16A	protein-coding	4.5	14.0	12.0	5.0	6.5	11.0
Merged-chr4-132793606-2	chr4	132793106	132794106	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033308, intron 1 of 5)	B2_Mm1a|SINE|B2	2758.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-17804397-5	chr13	17803926	17804926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081058, exon 1 of 14)	exon (NM_001081058, exon 1 of 14)	671.0	NM_001081058	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74391521-4	chr1	74391035	74392035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153088)	promoter-TSS (NM_153088)	-74.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47465642-4	chr19	47465147	47466147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1236.0	NM_008018	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	2.0	1.0	3.0	1.0	12.5	2.0
Merged-chr9-45268202-4	chr9	45267693	45268693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008348, intron 1 of 6)	intron (NM_008348, intron 1 of 6)	956.0	NR_136903	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95685336-4	chr10	95684852	95685852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121206.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41883087-4	chr10	41882613	41883613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162908, intron 1 of 9)	intron (NM_001162908, intron 1 of 9)	-4326.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94549689-4	chr8	94549199	94550199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153507, intron 2 of 15)	ID_B1|SINE|B4	16671.0	NM_153507	234577.0	Mm.291815	NM_153507	ENSMUSG00000034361	Cpne2	3322401K10Rik	copine II	protein-coding	9.5	20.5	23.0	33.0	15.5	23.5
Merged-chr10-75517927-4	chr10	75517424	75518424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347201)	promoter-TSS (NM_001347201)	48.0	NM_001347201	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59221542-6	chr11	59220856	59221856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007476, intron 1 of 4)	intron (NM_007476, intron 1 of 4)	6806.0	NM_001130408	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	8.5	19.0	13.5	10.0	32.5	20.5
Merged-chr12-108936467-2	chr12	108935967	108936967	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	42195.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16688335-4	chr1	16687827	16688827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016923)	promoter-TSS (NM_016923)	-129.0	NM_016923	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	143.5	362.5	316.5	167.5	343.0	321.0
Merged-chr2-116953548-4	chr2	116953059	116954059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53407.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13986713-4	chr10	13986174	13987174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	20295.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.0	1.0	0.0	0.0	0.0	0.5
Merged-chr16-21696259-2	chr16	21695759	21696759	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1594.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65561148-4	chr9	65560631	65561631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 3 of 5)	intron (NM_153119, intron 3 of 5)	18956.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	15.5	35.0	15.0	13.0	39.0	12.0
Merged-chr9-45252629-4	chr9	45252186	45253186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14021.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84200942-6	chr8	84200459	84201459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7559.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	141.5	269.0	253.5	134.5	258.0	235.5
Merged-chr12-84193983-4	chr12	84193481	84194481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163502)	promoter-TSS (NM_001163502)	34.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70755131-4	chr17	70754623	70755623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	91654.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111418216-4	chr13	111417698	111418698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	71929.0	NM_028487	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69410854-4	chr11	69410328	69411328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017426, intron 1 of 22)	CpG	2847.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46551916-4	chr8	46551424	46552424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027973)	promoter-TSS (NM_027973)	-145.0	NM_027973	71876.0	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86734383-4	chr11	86733897	86734897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 2 of 31)	intron (NM_001003908, intron 2 of 31)	23170.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79742152-4	chr15	79741654	79742654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045069)	promoter-TSS (NR_045069)	382.0	NM_194342	223697.0	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-114987291-4	chr4	114986793	114987793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025647)	promoter-TSS (NM_025647)	-65.0	NM_025647	66588.0	Mm.294159	NM_025647	ENSMUSG00000028719	Cmpk1	0610011D08Rik|CK|Cmpk|UMP-CMPk	cytidine monophosphate (UMP-CMP) kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99414502-4	chr5	99413988	99414988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-161561.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-115309671-3	chr9	115309170	115310170	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024222, intron 1 of 15)	CpG	751.0	NM_024222	68292.0	Mm.296158	NM_024222	ENSMUSG00000032437	Stt3b	1300006C19Rik|Simp	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	protein-coding	63.5	77.0	107.0	50.5	71.5	81.5
Merged-chr13-95033203-4	chr13	95032720	95033720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172263, intron 16 of 19)	intron (NM_172263, intron 16 of 19)	56876.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9631230-3	chr4	9630731	9631731	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177856, intron 4 of 4)	intron (NM_001177856, intron 4 of 4)	12486.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	50.5	102.5	77.0	65.0	94.5	78.5
Merged-chr7-128321361-4	chr7	128320859	128321859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23228.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139247672-4	chr7	139247180	139248180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033206)	promoter-TSS (NM_001033206)	-802.0	NM_001033206	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	87.0	171.5	178.0	123.5	199.0	141.0
Merged-chr19-15537702-4	chr19	15537208	15538208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16D|LTR|ERVL	386914.0	NM_001205339	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	1.0	4.5	3.0	1.0	6.5	2.0
Merged-chr2-26483394-4	chr2	26482884	26483884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 4 of 33)	intron (NM_008714, intron 4 of 33)	-13265.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58423098-4	chr1	58422586	58423586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042634, intron 1 of 12)	intron (NM_001042634, intron 1 of 12)	1002.0	NR_027854	12747.0	Mm.1761	NM_009905	ENSMUSG00000026034	Clk1	STY	CDC-like kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-104611456-4	chr13	104610965	104611965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	205488.0	NM_026072	67285.0	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	0.0	6.0	4.5	4.0	0.0	5.0
Merged-chr10-80170171-2	chr10	80169671	80170671	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152857, intron 3 of 7)	intron (NR_152857, intron 3 of 7)	2332.0	NR_152857	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62152358-4	chr15	62151844	62152844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003368, intron 3 of 8)	intron (NR_003368, intron 3 of 8)	67107.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121739840-4	chr10	121739335	121740335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359720)	promoter-TSS (NM_001359720)	-95.0	NM_001359720	270802.0	Mm.209172	NM_173022	ENSMUSG00000053684	BC048403	E030027L10	cDNA sequence BC048403	protein-coding	44.0	141.0	107.0	64.5	155.0	122.0
Merged-chr6-84034535-2	chr6	84034035	84035035	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310152, intron 1 of 53)	intron (NM_001310152, intron 1 of 53)	15149.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-19979518-4	chr11	19979024	19980024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	55082.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53853157-2	chr11	53852657	53853657	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 1 of 3)	B3|SINE|B2	6099.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114163107-4	chr7	114162555	114163555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-45274.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	17.0	11.0	18.0	6.5	4.0	3.5
Merged-chr12-32306591-4	chr12	32306091	32307091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-72198.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30412867-4	chr7	30412348	30413348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011662)	promoter-TSS (NM_011662)	-940.0	NM_011662	22177.0	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	173.5	407.0	305.0	182.5	433.0	325.5
Merged-chr1-152532900-2	chr1	152532400	152533400	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 13 of 17)	intron (NM_016846, intron 13 of 17)	92317.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75587671-4	chr11	75587196	75588196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008850)	promoter-TSS (NM_008850)	-383.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	45.0	102.0	75.5	18.0	30.0	35.5
Merged-chr2-167352719-4	chr2	167352235	167353235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-3557.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45218878-2	chr14	45218378	45219378	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027518)	promoter-TSS (NM_027518)	547.0	NM_172597	70561.0	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100508837-4	chr7	100508335	100509335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153527, intron 3 of 7)	URR1B|DNA|hAT-Charlie	5980.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	45.5	58.5	74.5	5.5	41.0	48.5
Merged-chr12-110736787-2	chr12	110736287	110737287	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1110.0	NM_027149	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103340209-4	chr15	103339725	103340725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013866)	promoter-TSS (NM_013866)	-139.0	NM_013866	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-57970096-4	chr1	57969616	57970616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027630)	promoter-TSS (NR_027630)	-32.0	NM_001159865	51960.0	Mm.339711	NM_030211	ENSMUSG00000054770	Kctd18	4932411A20Rik|6530404F10Rik	potassium channel tetramerisation domain containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19345284-6	chr7	19344732	19345732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127324, intron 1 of 6)	CpG	161.0	NM_007948	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	24.5	7.0	15.0	7.5	11.5	1.5
Merged-chr11-53898403-4	chr11	53897916	53898916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	-6713.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-172400114-4	chr2	172399606	172400606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080820, intron 1 of 6)	L2c|LINE|L2	6312.0	NM_001276423	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	7.0	18.5	8.5	1.0	33.0	10.0
Merged-chr18-74880205-4	chr18	74879680	74880680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	81083.0	NM_010720	16891.0	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding	1.0	2.5	7.5	0.0	0.0	0.0
Merged-chr15-83145723-4	chr15	83145215	83146215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 1 of 7)	intron (NM_001347082, intron 1 of 7)	3663.0	NM_178627	73826.0	Mm.23758	NM_178627	ENSMUSG00000041815	Poldip3	1110008P04Rik|AA408269|AL022852|C77954|PDIP46|SKAR|mKIAA1649	polymerase (DNA-directed), delta interacting protein 3	protein-coding	0.0	4.5	2.0	5.0	9.0	2.0
Merged-chr5-24453636-2	chr5	24453136	24454136	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359881, intron 1 of 15)	intron (NM_001359881, intron 1 of 15)	1459.0	NM_139153	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70159521-4	chr14	70159008	70160008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004155)	promoter-TSS (NM_001004155)	-6.0	NM_001004155	268759.0	Mm.12148	NM_001004155	ENSMUSG00000044551	9930012K11Rik	-	RIKEN cDNA 9930012K11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47000596-4	chr14	47000107	47001107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163433)	promoter-TSS (NM_001163433)	-733.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	38.5	35.5	42.0	11.5	42.5	9.5
Merged-chr6-136940176-4	chr6	136939659	136940659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301303)	promoter-TSS (NM_001301303)	-632.0	NM_001301303	11857.0	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	103.5	233.5	166.0	63.5	110.0	85.0
Merged-chr19-11912304-4	chr19	11911803	11912803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172635)	promoter-TSS (NM_172635)	-96.0	NM_172635	225929.0	Mm.42711	NM_172635	ENSMUSG00000046139	Patl1	AV312086|Pat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding	370.5	740.0	612.0	401.0	724.5	640.5
Merged-chr19-17276209-3	chr19	17275681	17276681	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	63324.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	114.0	316.5	283.5	15.0	4.0	15.0
Merged-chr3-130709716-4	chr3	130709205	130710205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025509)	promoter-TSS (NM_025509)	-261.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122474023-4	chr8	122473518	122474518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033142, intron 1 of 5)	intron (NM_001033142, intron 1 of 5)	2046.0	NM_001033142	68718.0	Mm.34356	NM_001033142	ENSMUSG00000014470	Rnf166	1110031E24Rik|AW555115|Zfp313l	ring finger protein 166	protein-coding	27.5	25.0	18.0	10.5	25.5	15.5
Merged-chr3-94995025-4	chr3	94994507	94995507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293715, intron 5 of 11)	L2c|LINE|L2	-9161.0	NR_105980	102465613.0		NR_105980	ENSMUSG00000099033	Mir7013	Gm27488|mmu-mir-7013	microRNA 7013	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34194700-4	chr10	34194216	34195216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	12835.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88256589-4	chr17	88256065	88257065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131053.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-114909012-4	chr4	114908510	114909510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008593)	promoter-TSS (NM_008593)	-112.0	NM_008593	17301.0	Mm.7997	NM_008593	ENSMUSG00000055210	Foxd2	AI426778|Mf2	forkhead box D2	protein-coding	0.5	0.0	0.5	0.5	0.0	0.5
Merged-chr2-167588910-4	chr2	167588408	167589408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43097.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129496799-4	chr4	129496317	129497317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5627.0	NM_001085491	68233.0	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75773692-4	chr2	75773189	75774189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58488.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	14.0	27.5	23.5	24.5	17.0	8.0
Merged-chr7-16910142-4	chr7	16909642	16910642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008967, exon 2 of 2)	3' UTR (NM_008967, exon 2 of 2)	3652.0	NM_008967	19222.0	Mm.287572	NM_008967	ENSMUSG00000043017	Ptgir	IP|PGI2	prostaglandin I receptor (IP)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86598939-2	chr6	86598439	86599439	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-29235.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65836424-1	chr17	65835924	65836924	+	1000.0	f1_c57bl6.idr	intron (NR_152099, intron 17 of 20)	intron (NR_152099, intron 17 of 20)	48499.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	5.0	9.0	5.0	0.5	0.0	0.0
Merged-chr1-80452274-4	chr1	80451713	80452713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040460, intron 2 of 2)	L2|LINE|L2	6281.0	NR_040460	72208.0	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan	RIKEN cDNA 1700016L21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-107595070-4	chr7	107594569	107595569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008905)	promoter-TSS (NM_008905)	18.0	NM_008905	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-95319092-4	chr1	95318598	95319598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026321, intron 1 of 2)	intron (NM_026321, intron 1 of 2)	5470.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128760883-4	chr6	128760381	128761381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27760.0	NM_001159904	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	15.0	42.5	45.5	17.0	78.0	33.5
Merged-chr8-94551832-4	chr8	94551339	94552339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153507, intron 4 of 15)	intron (NM_153507, intron 4 of 15)	18811.0	NM_153507	234577.0	Mm.291815	NM_153507	ENSMUSG00000034361	Cpne2	3322401K10Rik	copine II	protein-coding	0.5	0.5	2.0	0.0	1.5	1.0
Merged-chr3-58672183-4	chr3	58671667	58672667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20125.0	NR_004433	666680.0	Mm.422212	NR_004433		Gm8234	AU022133	spermine synthase pseudogene	pseudo	4.0	19.5	2.5	4.5	20.0	2.5
Merged-chr17-27851331-4	chr17	27850817	27851817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011432, intron 5 of 5)	intron (NM_011432, intron 5 of 5)	-5190.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	66.5	184.0	147.5	77.0	186.5	144.0
Merged-chr15-79932746-4	chr15	79932262	79933262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144811)	promoter-TSS (NM_144811)	-116.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	15.5	30.0	9.0	10.0	19.5	22.0
Merged-chr14-14633326-4	chr14	14632836	14633836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69689.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5574855-4	chr17	5574337	5575337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	MLT1H1|LTR|ERVL-MaLR	82237.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4292670-2	chr19	4292170	4293170	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 3 of 20)	intron (NM_001290818, intron 3 of 20)	-9533.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-109440550-3	chr13	109440050	109441050	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	115806.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.5	0.0	2.5	3.5	6.0	2.0
Merged-chr5-149248390-2	chr5	149247890	149248890	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16614.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-47068022-4	chr7	47067504	47068504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15220.0	NR_106023	102465639.0		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38517140-2	chr15	38516640	38517640	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301688, intron 1 of 11)	intron (NM_001301688, intron 1 of 11)	2126.0	NM_001301688	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51481063-3	chr10	51480591	51481591	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291893, intron 2 of 7)	intron (NM_001291893, intron 2 of 7)	479.0	NM_001291892	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66384420-4	chr7	66383904	66384904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 1 of 33)	(CA)n|Simple_repeat|Simple_repeat	-2680.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	81.0	147.5	118.0	46.5	117.0	102.0
Merged-chr2-28917561-2	chr2	28917061	28918061	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355434)	promoter-TSS (NM_001355434)	-893.0	NM_001355434	54422.0	Mm.21390	NM_019446	ENSMUSG00000026805	Barhl1	Dres115|MBH2	BarH like homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104063717-4	chr9	104063201	104064201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175324)	promoter-TSS (NM_175324)	-2.0	NM_175324	102632.0	Mm.41274	NM_175324	ENSMUSG00000090150	Acad11	5730439E10Rik|AI987948	acyl-Coenzyme A dehydrogenase family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75720802-4	chr2	75720300	75721300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-16137.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	27.5	37.0	22.5	25.5	31.0	24.0
Merged-chr1-191875909-4	chr1	191875473	191876473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30808.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	31.0	75.0	39.5	36.0	65.5	52.5
Merged-chr7-27238790-4	chr7	27238301	27239301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133770, intron 5 of 14)	intron (NM_133770, intron 5 of 14)	5788.0	NM_133770	76889.0	Mm.124728	NM_133770	ENSMUSG00000003762	Coq8b	0610012P18Rik|Adck4	coenzyme Q8B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70839056-1	chr8	70838556	70839556	+	1000.0	f1_c57bl6.idr	intron (NM_027560, intron 1 of 7)	CpG	664.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	25.0	88.5	62.0	56.0	104.0	83.0
Merged-chr4-86856908-1	chr4	86856408	86857408	+	1000.0	f1_balb.idr	intron (NM_009096, intron 1 of 4)	CpG	459.0	NM_009096	20104.0	Mm.379007	NM_009096	ENSMUSG00000028495	Rps6	S6R	ribosomal protein S6	protein-coding	24.5	75.0	73.0	10.5	45.0	35.5
Merged-chr4-140174001-4	chr4	140173522	140174522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198610, intron 1 of 9)	intron (NM_198610, intron 1 of 9)	31149.0	NR_153821	102636673.0	Mm.449180	NR_153821		Gm13029	Gm33676	predicted gene 13029	ncRNA	46.0	44.0	34.0	30.5	56.0	33.5
Merged-chr1-133025351-4	chr1	133024838	133025838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302803)	promoter-TSS (NM_001302803)	78.0	NR_126506	17248.0	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	38.5	109.0	50.5	85.5	126.0	85.5
Merged-chr18-9806713-3	chr18	9806216	9807216	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 2 of 9)	URR1B|DNA|hAT-Charlie	99068.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50106186-2	chr11	50105686	50106686	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 7 of 7)	intron (NM_001290750, intron 7 of 7)	-25174.0	NM_001290759	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-36187303-4	chr12	36186806	36187806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146033, intron 6 of 9)	intron (NM_146033, intron 6 of 9)	30182.0	NM_146033	217473.0	Mm.130422	NM_146033	ENSMUSG00000036188	Ankmy2	AI035571|ZMYND20	ankyrin repeat and MYND domain containing 2	protein-coding	13.0	24.0	16.0	24.5	38.5	20.0
Merged-chr4-119239434-5	chr4	119238951	119239951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019782, intron 5 of 15)	intron (NM_019782, intron 5 of 15)	5622.0	NM_001042411	56401.0	Mm.27961	NM_019782	ENSMUSG00000028641	P3h1	2410024C15Rik|Gros1|Lepre1	prolyl 3-hydroxylase 1	protein-coding	2.0	16.0	14.0	6.5	18.5	8.5
Merged-chr9-77709177-4	chr9	77708693	77709693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45342.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	5.0	6.0	0.5	0.5	4.0	7.5
Merged-chr4-109475946-2	chr4	109475446	109476446	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013876, intron 1 of 2)	intron (NM_013876, intron 1 of 2)	559.0	NM_013876	29864.0	Mm.392580	NM_013876	ENSMUSG00000028557	Rnf11	-	ring finger protein 11	protein-coding	5.0	10.5	1.0	1.0	0.0	0.5
Merged-chr7-46834054-4	chr7	46833547	46834547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11757.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71603164-3	chr8	71602683	71603683	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166213, intron 8 of 14)	intron (NM_001166213, intron 8 of 14)	5537.0	NM_001166213	100037278.0	Mm.482159	NM_001166213	ENSMUSG00000043243	Fam129c	Bcnp1	family with sequence similarity 129, member C	protein-coding	1.5	6.0	14.5	2.0	0.0	0.5
Merged-chr7-126809207-4	chr7	126808703	126809703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7682.0	NM_026884	68952.0	Mm.440393	NM_026884	ENSMUSG00000058966	Fam57b	1500016O10Rik|A330104J06Rik|AI413816|AW060769	family with sequence similarity 57, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173218981-4	chr2	173218495	173219495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021394)	promoter-TSS (NM_021394)	-73.0	NM_001139519	58203.0	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69006077-4	chr8	69005569	69006569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82667.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	77.5	207.5	138.5	99.0	196.0	121.5
Merged-chr4-40757850-4	chr4	40757331	40758331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021535)	promoter-TSS (NM_021535)	54.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96364501-4	chr9	96364004	96365004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007502)	promoter-TSS (NM_007502)	-73.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	10.5	68.5	41.5	18.0	90.5	49.0
Merged-chr15-95797803-4	chr15	95797296	95798296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	6953.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76899862-4	chr15	76899368	76900368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025536)	promoter-TSS (NM_025536)	-73.0	NM_025536	66398.0	Mm.291716	NM_025536	ENSMUSG00000055041	Commd5	2310065H03Rik|AI854466|D15Ertd81e|Hcarg	COMM domain containing 5	protein-coding	4.5	9.0	25.0	11.5	19.5	24.0
Merged-chr9-122950958-4	chr9	122950460	122951460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010620)	promoter-TSS (NM_010620)	40.0	NM_025419	66202.0	Mm.268307	NM_025419	ENSMUSG00000032551	1110059G10Rik	-	RIKEN cDNA 1110059G10 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40125359-4	chr10	40124863	40125863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	16891.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-6410262-4	chr7	6409768	6410768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4907.0	NM_001134752	100042450.0	Mm.416919	NM_001134752	ENSMUSG00000093536	Smim17	Gm16532	small integral membrane protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153090750-4	chr2	153090240	153091240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17728.0	NM_001172117	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	149.5	354.5	259.5	145.0	327.0	251.0
Merged-chr4-59928581-4	chr4	59928074	59929074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13518.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	8.0	1.0	0.0	1.5	1.0	3.0
Merged-chr2-144289784-2	chr2	144289284	144290284	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	18880.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52982131-2	chr13	52981631	52982631	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1092.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	1.5	15.5	1.0	9.0	8.0	4.0
Merged-chr15-86166371-4	chr15	86165874	86166874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-19354.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46480697-4	chr11	46480210	46481210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_134250, exon 7 of 7)	3' UTR (NM_134250, exon 7 of 7)	25779.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	15.0	30.5	14.5	14.5	11.0	12.0
Merged-chr10-80199663-4	chr10	80199143	80200143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	20161.0	NM_007909	13637.0	Mm.1478	NM_007909	ENSMUSG00000003070	Efna2	CEK7L|Elf1|Epl6|Eplg6|Lerk6	ephrin A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-110919801-4	chr8	110919291	110920291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009179)	promoter-TSS (NM_009179)	-74.0	NM_009179	20444.0	Mm.200388	NM_009179	ENSMUSG00000031749	St3gal2	AI429591|AW822065|ST3GalII|Siat5	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-146968137-4	chr1	146967631	146968631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	470444.0	NM_001145807	215378.0	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103945090-4	chr2	103944601	103945601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12894.0	NM_001142337	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-88864657-4	chr11	88864177	88865177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042541)	promoter-TSS (NM_001042541)	-91.0	NM_001042541	11640.0	Mm.2969	NM_009648	ENSMUSG00000018428	Akap1	AKAP121|AKAP84|Akap|C76494|C81186|DAKAP1|S-AKAP84	A kinase (PRKA) anchor protein 1	protein-coding	8.5	10.5	5.0	6.5	24.0	4.5
Merged-chr17-37270212-4	chr17	37269819	37270819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013819)	promoter-TSS (NM_013819)	85.0	NM_013819	14991.0	Mm.14437	NM_013819	ENSMUSG00000016206	H2-M3	H-2M3|Hmt|M3a|MuprM3|MuprM301|MuprM302|R4B2	histocompatibility 2, M region locus 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32554931-4	chr11	32554414	32555414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	21648.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-79481653-4	chr14	79481146	79482146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018765)	promoter-TSS (NM_018765)	-378.0	NM_018765	22380.0	Mm.476813	NM_018765	ENSMUSG00000022023	Wbp4	AW545037|BB101031|FBP21	WW domain binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86884815-4	chr12	86884299	86885299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145836)	promoter-TSS (NM_145836)	15.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-39771054-4	chr15	39770578	39771578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022722, intron 9 of 9)	intron (NM_022722, intron 9 of 9)	25148.0	NM_001289508	75766.0	Mm.159563	NM_029422	ENSMUSG00000022303	Dcstamp	4833414I07Rik|DC-STAMP|FIND|Tm7sf4|mDC-STAMP	dendrocyte expressed seven transmembrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115420545-2	chr11	115420045	115421045	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027862)	promoter-TSS (NM_027862)	419.0	NM_183285	70382.0	Mm.276299	NM_183285	ENSMUSG00000016940	Kctd2	2310012I15Rik	potassium channel tetramerisation domain containing 2	protein-coding	0.0	7.0	10.5	1.5	12.5	11.5
Merged-chr10-99302264-4	chr10	99301738	99302738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39007.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167301213-2	chr2	167300713	167301713	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019835, exon 9 of 9)	3' UTR (NM_019835, exon 9 of 9)	47965.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44551331-4	chr9	44550838	44551838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24917.0	NM_007551	12145.0	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	15.0	35.0	23.0	17.5	37.0	34.5
Merged-chr11-72217252-4	chr11	72216735	72217735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163728, exon 1 of 1)	3' UTR (NM_001163728, exon 1 of 1)	-1643.0	NM_026068	67279.0	Mm.159496	NM_026068	ENSMUSG00000020801	Med31	3110004H13Rik|CGI-125|l11Jus15	mediator complex subunit 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164913252-1	chr2	164912752	164913752	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-1502.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	24.0	15.5	13.5	0.5	3.0	3.0
Merged-chr18-23430776-1	chr18	23430276	23431276	+	1000.0	f0_balb.idr	intron (NM_001361217, intron 1 of 20)	intron (NM_001361217, intron 1 of 20)	15367.0	NM_001361217	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21913555-4	chr16	21913053	21914053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172821, intron 8 of 12)	Lx8b|LINE|L1	21584.0	NM_172821	71751.0	Mm.420837	NM_172821	ENSMUSG00000033618	Map3k13	C130026N12Rik|LZK	mitogen-activated protein kinase kinase kinase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4149373-4	chr7	4148870	4149870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175529, exon 1 of 1)	exon (NM_175529, exon 1 of 1)	502.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-93447475-2	chr3	93446975	93447975	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163098, exon 2 of 2)	exon (NM_001163098, exon 2 of 2)	5145.0	NM_001163098	99681.0	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58744651-4	chr15	58744146	58745146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78781.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-7299545-4	chr7	7299049	7300049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302386)	promoter-TSS (NM_001302386)	8.0	NM_001302387	12727.0	Mm.297883	NM_011334	ENSMUSG00000000605	Clcn4	Clc4-2|Clcn4-2|clC-4	chloride channel, voltage-sensitive 4	protein-coding	161.0	473.5	301.5	217.0	482.5	334.5
Merged-chr8-77451638-4	chr8	77451150	77452150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 1 of 22)	intron (NM_030113, intron 1 of 22)	-65406.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-40594992-4	chr6	40594490	40595490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9185.0	NM_001038604	23845.0	Mm.103765	NM_021364	ENSMUSG00000029915	Clec5a	Clecsf5|Ly100|MDL-1|Mdl1	C-type lectin domain family 5, member a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27489133-2	chr7	27488631	27489631	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018820, intron 1 of 1)	intron (NM_018820, intron 1 of 1)	2178.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	1.0	0.5	0.0	1.0	0.0	0.0
Merged-chr12-36156926-4	chr12	36156380	36157380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025840)	promoter-TSS (NM_025840)	-55.0	NM_025840	66912.0	Mm.288669	NM_025840	ENSMUSG00000020547	Bzw2	1110001I24Rik|Bdm2|HSPC028	basic leucine zipper and W2 domains 2	protein-coding	0.5	6.0	6.5	5.0	11.0	19.0
Merged-chr7-25316710-4	chr7	25316216	25317216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160400)	promoter-TSS (NM_001160400)	-448.0	NM_001160400	269878.0	Mm.38527	NM_001160400	ENSMUSG00000045039	Megf8	AW049492|Egfl4|b2b1702.2Clo|b2b1702Clo|b2b288Clo|m687Ddg|mKIAA0817	multiple EGF-like-domains 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94526943-4	chr16	94526463	94527463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007834)	promoter-TSS (NM_007834)	-334.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36783161-4	chr18	36782655	36783655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305627)	promoter-TSS (NM_001305627)	50.0	NM_008214	15115.0	Mm.10528	NM_008214	ENSMUSG00000001380	Hars	MMHRS	histidyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78864053-4	chr15	78863549	78864549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-8520.0	NM_025622	107753.0	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	148.0	243.5	251.0	96.0	247.0	249.0
Merged-chr15-12118592-4	chr15	12118072	12119072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358823, intron 2 of 18)	CpG-4794	721.0	NM_001358823	22763.0	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91094475-2	chr1	91093986	91094986	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 10 of 22)	intron (NM_008515, intron 10 of 22)	41042.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19131575-4	chr7	19131065	19132065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175530, intron 1 of 1)	intron (NM_175530, intron 1 of 1)	11706.0	NM_175530	243867.0	Mm.230830	NM_175530	ENSMUSG00000050428	Fbxo46	20D7-FC4|4932704E22Rik|Fbxo34l	F-box protein 46	protein-coding	0.0	3.0	0.5	0.0	8.0	1.0
Merged-chr13-60738104-4	chr13	60737593	60738593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 18 of 26)	intron (NM_134062, intron 18 of 26)	48271.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	41.5	110.0	78.5	50.0	138.5	68.5
Merged-chr2-126707277-4	chr2	126706774	126707774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252580)	promoter-TSS (NM_001252580)	-54.0	NM_001252580	84092.0	Mm.272629	NM_019729	ENSMUSG00000027363	Usp8	AI574262|AW557536|Ubpy|mKIAA0055	ubiquitin specific peptidase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13836247-2	chr16	13835747	13836747	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010946)	TTS (NM_010946)	16996.0	NM_001346111	18203.0	Mm.380410	NM_010946	ENSMUSG00000022681	Ntan1	PNAA|PNAD	N-terminal Asn amidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155592008-2	chr2	155591508	155592508	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008180, intron 1 of 12)	intron (NM_008180, intron 1 of 12)	802.0	NM_001291111	14854.0	Mm.252316	NM_008180	ENSMUSG00000027610	Gss	AI314904|GS-A/GS-B|GSH-S	glutathione synthetase	protein-coding	15.5	44.5	39.0	13.5	50.0	30.0
Merged-chr15-64088558-4	chr15	64088046	64089046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001276462, exon 28 of 28)	3' UTR (NM_001276462, exon 28 of 28)	-28098.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	35.5	89.0	43.0	42.0	40.5	70.5
Merged-chr8-8143186-4	chr8	8142704	8143704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	517569.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	10.5	24.5	8.5	13.0	22.5	21.0
Merged-chr10-19087241-4	chr10	19086752	19087752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54497.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	1.5	12.5	4.5	9.5	9.5	10.0
Merged-chr3-88043075-4	chr3	88042581	88043581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110809)	promoter-TSS (NM_001110809)	-25.0	NM_025663	66614.0	Mm.46029	NM_025663	ENSMUSG00000028069	Gpatch4	2610029K21Rik|Gpatc4	G patch domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97498540-2	chr15	97498040	97499040	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	207282.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170220582-2	chr2	170220082	170221082	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77907.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90903718-4	chr5	90903199	90904199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009140)	promoter-TSS (NM_009140)	-200.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	19.0	28.5	11.0	5.5	15.5	24.5
Merged-chr2-105904588-4	chr2	105904099	105905099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028260)	promoter-TSS (NM_028260)	-35.0	NM_023876	77766.0	Mm.3608	NM_023876	ENSMUSG00000027167	Elp4	A330107A17Rik|Paxneb	elongator acetyltransferase complex subunit 4	protein-coding	8.5	9.0	23.5	5.0	5.5	5.5
Merged-chr11-75460591-4	chr11	75460071	75461071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030711)	promoter-TSS (NR_030711)	-968.0	NR_030711	100042498.0	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-135011575-4	chr6	135011074	135012074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026360)	promoter-TSS (NM_026360)	-38.0	NM_026360	67755.0	Mm.166524	NM_026360	ENSMUSG00000030204	Ddx47	4930588A18Rik|C77285	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	protein-coding	26.5	58.5	62.0	32.0	32.0	61.0
Merged-chr5-137601158-4	chr5	137600660	137601660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030037)	promoter-TSS (NM_030037)	-101.0	NM_030037	68929.0	Mm.41355	NM_030037	ENSMUSG00000037221	Mospd3	1190005J19Rik|5133401H10Rik|Gtig2|R124	motile sperm domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55560007-4	chr14	55559515	55560515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133734)	promoter-TSS (NM_133734)	-14.0	NR_037572	28199.0	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35556270-4	chr8	35555772	35556772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_C_Mam|LINE|RTE-X	-31526.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	20.5	34.0	21.5	8.5	12.5	10.0
Merged-chr14-76081795-5	chr14	76081324	76082324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR41|LTR|ERV1	28991.0	NM_026177	67467.0	Mm.260767	NM_026177	ENSMUSG00000022008	Gpalpp1	1200011I18Rik|Kiaa1704	GPALPP motifs containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122946951-4	chr6	122946393	122947393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-5622.0	NM_001204241	73149.0	Mm.25684	NM_153197	ENSMUSG00000043832	Clec4a3	3110037K17Rik|Dcir3	C-type lectin domain family 4, member a3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55655526-4	chr4	55655028	55656028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123053.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.0	7.5	8.5	4.0	5.0	1.5
Merged-chr3-36863663-1	chr3	36863163	36864163	+	1000.0	f0_balb.idr	intron (NM_172679, intron 1 of 85)	intron (NM_172679, intron 1 of 85)	557.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173737498-4	chr2	173737018	173738018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019806)	promoter-TSS (NM_019806)	-53.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69395770-2	chr11	69395268	69396268	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_030083)	promoter-TSS (NM_030083)	-23.0	NM_030083	78304.0	Mm.45683	NM_030083	ENSMUSG00000059278	Naa38	1500034E06Rik|Lsmd1	N(alpha)-acetyltransferase 38, NatC auxiliary subunit	protein-coding	8.5	12.0	14.0	10.5	30.0	28.0
Merged-chr4-40854134-4	chr4	40853630	40854630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_022305, exon 1 of 6)	5' UTR (NM_022305, exon 1 of 6)	407.0	NM_022305	14595.0	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-36244902-4	chr2	36244400	36245400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 8 of 10)	intron (NM_008969, intron 8 of 10)	14474.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73937210-4	chr17	73936699	73937699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 4 of 35)	intron (NM_011723, intron 4 of 35)	12997.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117799412-4	chr11	117798914	117799914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029964, intron 2 of 5)	intron (NM_029964, intron 2 of 5)	1754.0	NM_029964	77727.0	Mm.159981	NM_029964	ENSMUSG00000025573	6030468B19Rik	Il-40	RIKEN cDNA 6030468B19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167680160-4	chr2	167679671	167680671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8744.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53040859-2	chr4	53040359	53041359	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 43 of 49)	intron (NM_013454, intron 43 of 49)	28979.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71367733-4	chr2	71367227	71368227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172436)	promoter-TSS (NM_172436)	-173.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89089990-4	chr3	89089497	89090497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083808)	promoter-TSS (NM_001083808)	34.0	NM_001083808	72296.0	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120166030-4	chr10	120165531	120166531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359184, intron 7 of 11)	intron (NM_001359184, intron 7 of 11)	35566.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107985869-4	chr9	107985389	107986389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026597)	promoter-TSS (NM_026597)	27.0	NM_026597	68176.0	Mm.76166	NM_026597	ENSMUSG00000042106	Fam212a	6230427J02Rik|Inka1	family with sequence similarity 212, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68738428-2	chr10	68737928	68738928	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 1 of 5)	MTE2a|LTR|ERVL-MaLR	14682.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56925618-4	chr18	56925133	56926133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177115)	promoter-TSS (NM_177115)	-85.0	NM_177115	320253.0	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	2.0	18.5	10.5	3.5	14.0	9.5
Merged-chr8-125776995-4	chr8	125776527	125777527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175561, intron 25 of 33)	intron (NM_175561, intron 25 of 33)	42824.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4790137-4	chr16	4789628	4790628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358080)	promoter-TSS (NM_001358080)	164.0	NM_001358082	66626.0	Mm.157648	NM_025670	ENSMUSG00000004071	Cdip1	2700048O17Rik|5730403B10Rik|AU018521|AW742692|CDIP	cell death inducing Trp53 target 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89867086-2	chr3	89866586	89867586	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35716.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	7.5	5.0	6.5	6.0	2.0	6.5
Merged-chr16-94601805-4	chr16	94601288	94602288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-9631.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-99045584-2	chr14	99045084	99046084	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175265)	promoter-TSS (NM_175265)	552.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113697042-4	chr6	113696533	113697533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033463)	promoter-TSS (NM_001033463)	-17.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95772493-4	chr15	95771993	95772993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-18350.0	NM_175344	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110653469-4	chr5	110652967	110653967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027156)	promoter-TSS (NM_027156)	16.0	NM_027156	69663.0	Mm.5267	NM_027156	ENSMUSG00000029504	Ddx51	2310061O04Rik|AA537002|C81583|R75505	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51	protein-coding	9.5	52.0	25.0	9.5	50.5	36.0
Merged-chr5-96912976-4	chr5	96912470	96913470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8302.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	139.0	332.5	241.0	164.0	390.0	272.0
Merged-chr12-76404188-4	chr12	76403709	76404709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008301)	promoter-TSS (NM_008301)	33.0	NM_001002012	15512.0	Mm.296181	NM_008301	ENSMUSG00000059970	Hspa2	70kDa|HSP70.2|HSP70A2|Hsp70-2	heat shock protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4880604-4	chr16	4880100	4881100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145359)	promoter-TSS (NM_145359)	-749.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81074700-4	chr15	81074191	81075191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	30356.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	6.0	14.0	10.0	6.5	25.0	12.5
Merged-chr17-81704907-4	chr17	81704399	81705399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	33488.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118901368-4	chr2	118900868	118901868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045523)	promoter-TSS (NM_001045523)	-247.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35762816-4	chr17	35762316	35763316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9634.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	0.5	9.0	5.0	1.0	2.0	6.5
Merged-chr10-61167532-4	chr10	61167022	61168022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-4442.0	NM_001017419	65971.0	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110408195-4	chr9	110407662	110408662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081043)	promoter-TSS (NM_001081043)	48.0	NM_001081043	104831.0	Mm.335477	NM_001081043	ENSMUSG00000036057	Ptpn23	AI462446|PTP-TD14	protein tyrosine phosphatase, non-receptor type 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120835605-4	chr7	120835087	120836087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7244.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45047032-2	chr2	45046532	45047532	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-23855.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91083698-2	chr2	91083198	91084198	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12980.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	86.5	227.0	145.0	79.0	182.0	111.0
Merged-chr9-46110810-4	chr9	46110297	46111297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	97977.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86683938-4	chr11	86683430	86684430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175004)	promoter-TSS (NM_175004)	-53.0	NM_175004	217057.0	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6367680-4	chr4	6367166	6368166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	1986.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	36.5	62.0	43.0	41.0	62.5	45.0
Merged-chr15-62043948-4	chr15	62043462	62044462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	4705.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	26.5	50.5	41.5	25.5	24.5	29.5
Merged-chr15-89196569-4	chr15	89196067	89197067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027081)	promoter-TSS (NM_027081)	-93.0	NM_027081	69440.0	Mm.482128	NM_027081	ENSMUSG00000015377	Dennd6b	1700027J05Rik|AI414881|Fam116b	DENN/MADD domain containing 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30951368-4	chr14	30950854	30951854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011849)	promoter-TSS (NM_011849)	-23.0	NM_001308328	23955.0	Mm.251494	NM_011849	ENSMUSG00000021918	Nek4	Stk2	NIMA (never in mitosis gene a)-related expressed kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101095468-4	chr11	101094944	101095944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008949)	promoter-TSS (NM_008949)	-9.0	NM_008949	19183.0	Mm.18344	NM_008949	ENSMUSG00000019303	Psmc3ip	C79099|GT198|HOP2|Tbpip	proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57828863-4	chr10	57828334	57829334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	34290.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94605668-4	chr10	94605176	94606176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19477.0	NR_106070	102466817.0		NR_106070	ENSMUSG00000098544	Mir7211	Gm27536|mmu-mir-7211	microRNA 7211	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25547014-4	chr2	25546514	25547514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290413)	promoter-TSS (NM_001290413)	-74.0	NM_009422	22030.0	Mm.3399	NM_009422	ENSMUSG00000026942	Traf2	AI325259	TNF receptor-associated factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12128641-4	chr18	12128118	12129118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024182)	promoter-TSS (NM_024182)	-232.0	NM_024182	66878.0	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	8.5	36.0	32.5	10.0	32.5	34.5
Merged-chr15-76331210-4	chr15	76330702	76331702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010331)	promoter-TSS (NM_010331)	-92.0	NM_010331	14731.0	Mm.5903	NM_010331	ENSMUSG00000022561	Gpaa1	C80044|mGAA1	GPI anchor attachment protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32868363-4	chr16	32867871	32868871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001200038)	promoter-TSS (NM_001200038)	-5.0	NM_172615	100502698.0	Mm.327319	NM_172615	ENSMUSG00000035629	Rubcn	1700021K19Rik|5330403K09|Rubicon|mKIAA0226	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	protein-coding	22.0	63.5	62.5	35.5	82.0	69.5
Merged-chr6-70792875-4	chr6	70792374	70793374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009075)	promoter-TSS (NM_009075)	-699.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107279042-4	chr3	107278559	107279559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026774, exon 1 of 4)	exon (NM_026774, exon 1 of 4)	201.0	NM_026774	68576.0	Mm.290035	NM_026774	ENSMUSG00000087260	Lamtor5	1110003H18Rik|Hbxip|XIP	late endosomal/lysosomal adaptor, MAPK and MTOR activator 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102942743-2	chr2	102942243	102943243	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41078.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	10.5	49.0	45.0	26.0	48.0	36.5
Merged-chr2-154314063-4	chr2	154313574	154314574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001025574, exon 7 of 15)	exon (NM_001025574, exon 7 of 15)	6830.0	NM_001025574	433492.0	Mm.330682	NM_001025574	ENSMUSG00000067996	Bpifb9b	5430413K10Rik|AI413838	BPI fold containing family B, member 9B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90917796-4	chr2	90917284	90918284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025576, exon 1 of 5)	exon (NM_025576, exon 1 of 5)	266.0	NM_025576	66461.0	Mm.23926	NM_025576		Ptpmt1	1110001D10Rik|2810004N20Rik|PLIP	protein tyrosine phosphatase, mitochondrial 1	protein-coding	85.5	139.0	100.5	49.0	87.5	72.5
Merged-chr6-134897951-4	chr6	134897447	134898447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167696)	promoter-TSS (NM_001167696)	-14.0	NR_029441	72813.0	Mm.409034	NR_029441	ENSMUSG00000100876	2810454H06Rik	-	RIKEN cDNA 2810454H06 gene	ncRNA	85.0	164.0	167.0	98.0	231.5	137.0
Merged-chr6-125360208-4	chr6	125359675	125360675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011609, intron 5 of 9)	intron (NM_011609, intron 5 of 9)	10452.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	20.5	26.5	46.5	17.5	20.5	29.0
Merged-chr13-64248992-4	chr13	64248500	64249500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122989)	promoter-TSS (NM_001122989)	300.0	NR_045798	66503.0	Mm.443331	NR_045798	ENSMUSG00000097101	1810034E14Rik	-	RIKEN cDNA 1810034E14 gene	ncRNA	37.0	76.0	63.0	34.0	62.5	35.0
Merged-chr3-38144301-4	chr3	38143799	38144799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63820.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110879838-4	chr5	110879355	110880355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001267622)	promoter-TSS (NM_001267622)	52.0	NM_001267622	209683.0	Mm.295660	NM_024477	ENSMUSG00000033209	Ttc28	2310015L07Rik|6030435N04|AI428795|AI851761|BC002262|TPRBK	tetratricopeptide repeat domain 28	protein-coding	2.0	10.5	13.0	6.5	15.5	7.0
Merged-chr3-100489381-4	chr3	100488869	100489869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142952)	promoter-TSS (NM_001142952)	-177.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35101784-4	chr9	35101288	35102288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-14940.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-105271422-4	chr10	105270922	105271922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177368, intron 9 of 11)	intron (NM_177368, intron 9 of 11)	303057.0	NM_177368	278279.0	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	20.5	83.0	59.5	57.0	66.5	67.0
Merged-chr17-50490869-4	chr17	50490370	50491370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18677.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155847408-4	chr4	155846914	155847914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010091)	promoter-TSS (NM_010091)	12.0	NM_001356381	13542.0	Mm.3400	NM_010091	ENSMUSG00000029071	Dvl1	Dvl|mKIAA4029	dishevelled segment polarity protein 1	protein-coding	29.5	41.0	21.5	30.5	69.0	31.5
Merged-chr1-64303079-4	chr1	64302583	64303583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-181694.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85812655-4	chr11	85812160	85813160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_077059, intron 1 of 4)	intron (NR_077059, intron 1 of 4)	19728.0	NR_077059	69909.0	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123212871-4	chr8	123212380	123213380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177279)	promoter-TSS (NM_177279)	22.0	NM_177279	320869.0	Mm.258354	NM_177279	ENSMUSG00000048478	Spata33	4732415M23Rik|AI847264	spermatogenesis associated 33	protein-coding	78.5	178.5	128.5	79.0	159.5	125.0
Merged-chr11-95347069-4	chr11	95346552	95347552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172543, intron 1 of 7)	B4A|SINE|B4	10034.0	NM_172543	215512.0	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9449507-3	chr18	9449008	9450008	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026484, intron 1 of 9)	CpG	646.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84549982-4	chr10	84549476	84550476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040658, intron 2 of 3)	(A)n|Simple_repeat|Simple_repeat	3362.0	NR_040658	442847.0	Mm.128292	NR_040658	ENSMUSG00000097076	Platr7	C330046G13Rik	pluripotency associated transcript 7	ncRNA	23.0	20.0	8.5	23.0	20.0	8.5
Merged-chr8-81767199-4	chr8	81766697	81767697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001297593, intron 4 of 23)	intron (NM_001297593, intron 4 of 23)	424635.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	23.0	20.5	15.0	17.0	10.0	25.5
Merged-chr3-97993753-4	chr3	97993234	97994234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19804.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3314014-4	chr8	3313512	3314512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34395.0	NM_001330056	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	18.0	46.5	43.5	28.5	43.0	32.5
Merged-chr3-116185418-4	chr3	116184938	116185938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-55750.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35710483-4	chr7	35709939	35710939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178704, intron 12 of 18)	intron (NM_178704, intron 12 of 18)	44015.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	11.5	20.5	17.0	11.5	23.5	19.5
Merged-chr2-34794525-2	chr2	34794025	34795025	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145522, intron 3 of 7)	intron (NM_145522, intron 3 of 7)	5387.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29998570-4	chr17	29998049	29999049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6490.0	NM_148926	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0.5	15.0	4.0	1.5	25.0	11.5
Merged-chr3-97206673-4	chr3	97206152	97207152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029933, intron 9 of 9)	intron (NM_029933, intron 9 of 9)	20712.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84293363-4	chr17	84292884	84293884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 29 of 37)	intron (NM_183021, intron 29 of 37)	-105437.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120590257-2	chr8	120589757	120590757	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1182.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70991186-1	chr17	70990686	70991686	+	1000.0	f1_balb.idr	promoter-TSS (NM_023402)	promoter-TSS (NM_023402)	-670.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	71.5	225.5	169.0	127.5	249.0	186.5
Merged-chr7-80215532-2	chr7	80215032	80216032	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 3 of 13)	intron (NM_001360135, intron 3 of 13)	17091.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35730490-4	chr18	35729986	35730986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033168, exon 2 of 2)	3' UTR (NM_001033168, exon 2 of 2)	3497.0	NM_001033168	73449.0	Mm.379225	NM_001033168	ENSMUSG00000073598	1700066B19Rik	SMIM33	RIKEN cDNA 1700066B19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56707710-4	chr18	56707204	56708204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010721)	promoter-TSS (NM_010721)	-109.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103304759-2	chr15	103304259	103305259	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5679.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78879321-4	chr15	78878819	78879819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145929, intron 1 of 16)	intron (NM_145929, intron 1 of 16)	2129.0	NM_145929	106039.0	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	65.5	181.5	112.5	41.0	170.0	107.5
Merged-chr2-31446243-4	chr2	31445736	31446736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24034.0	NM_007494	11898.0	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49764195-4	chr7	49763730	49764730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146053, intron 3 of 5)	intron (NM_001146053, intron 3 of 5)	4718.0	NM_001146052	53415.0	Mm.20801	NM_016865	ENSMUSG00000039745	Htatip2	AW111545|Cc3|Tip30	HIV-1 Tat interactive protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-90680160-4	chr15	90679654	90680654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025815)	promoter-TSS (NM_025815)	-766.0	NM_001357979	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	2.0	16.5	3.5	0.5	14.0	4.0
Merged-chr8-82383492-4	chr8	82383006	82384006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254747, intron 1 of 7)	intron (NM_001254747, intron 1 of 7)	19080.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136151730-4	chr5	136151236	136152236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178751, intron 2 of 2)	intron (NM_178751, intron 2 of 2)	12955.0	NM_028070	72041.0	Mm.294725	NM_028070	ENSMUSG00000039754	Alkbh4	2010004B12Rik|Abj4	alkB homolog 4, lysine demethylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44553500-4	chr7	44552987	44553987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009473, intron 2 of 9)	intron (NM_009473, intron 2 of 9)	478.0	NM_009473	22260.0	Mm.968	NM_009473	ENSMUSG00000060601	Nr1h2	AI194859|LXR|LXRB|LXRBSV|LXRbeta|NER1|OR-1|RIP15|UR|Unr|Unr2	nuclear receptor subfamily 1, group H, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32823587-4	chr12	32823080	32824080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045032)	promoter-TSS (NR_045032)	-536.0	NR_045032	100504486.0	Mm.440246	NR_045032		Gdap10	Gdap-ps	ganglioside-induced differentiation-associated-protein 10	ncRNA	226.5	348.0	251.0	141.0	336.0	262.5
Merged-chr11-97150633-4	chr11	97150174	97151174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198100)	promoter-TSS (NM_198100)	-962.0	NM_198100	73174.0	Mm.27882	NM_198100	ENSMUSG00000038517	Tbkbp1	3110043L15Rik|ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51833630-4	chr11	51833139	51834139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357588, intron 5 of 12)	MIRb|SINE|MIR	23842.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4613111-4	chr8	4612583	4613583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145591)	promoter-TSS (NM_145591)	-87.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100026868-4	chr12	100026379	100027379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	62380.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-5191762-4	chr10	5191249	5192249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079686, intron 2 of 54)	intron (NM_001079686, intron 2 of 54)	2958.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49778346-4	chr7	49777837	49778837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133740)	promoter-TSS (NM_133740)	-21.0	NM_133740	71974.0	Mm.33202	NM_133740	ENSMUSG00000030505	Prmt3	2010005E20Rik|2410018A17Rik|AL033309|Hrmt1l3	protein arginine N-methyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-118459590-4	chr1	118459070	118460070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027901)	promoter-TSS (NR_027901)	-305.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	0.0	8.0	3.0	0.0	5.5	3.0
Merged-chr11-40733546-4	chr11	40733030	40734030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013552)	promoter-TSS (NM_013552)	-93.0	NM_013552	15366.0	Mm.116997	NM_013552	ENSMUSG00000020330	Hmmr	AA386826|CD168|Rhamm	hyaluronan mediated motility receptor (RHAMM)	protein-coding	0.0	8.5	0.0	1.5	0.0	2.5
Merged-chr13-34236949-4	chr13	34236458	34237458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	RSINE1|SINE|B4	73994.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-58943598-4	chr19	58943083	58944083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001327998)	promoter-TSS (NM_001327998)	89.0	NM_001327998	73442.0	Mm.39739	NM_175199	ENSMUSG00000025092	Hspa12a	1700063D12Rik|AI118035|AI840429|AW048913|AW556406|D5Mgi40|Gm19925|mKIAA0417	heat shock protein 12A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-63925503-4	chr7	63925026	63926026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	8669.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108661680-4	chr6	108661188	108662188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104577)	promoter-TSS (NR_104577)	-754.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0.0	1.0	0.0	0.0	0.0	1.5
Merged-chr2-25194610-4	chr2	25194112	25195112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_146115, exon 2 of 2)	exon (NM_146115, exon 2 of 2)	2201.0	NM_146115	227612.0	Mm.119747	NM_146115	ENSMUSG00000059555	Tor4a	A830007P12Rik	torsin family 4, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50132846-3	chr6	50132344	50133344	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361248, intron 1 of 13)	intron (NM_001361248, intron 1 of 13)	21984.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151686904-4	chr1	151686412	151687412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 5 of 13)	intron (NM_022018, intron 5 of 13)	67815.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20773350-4	chr10	20772845	20773845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48267.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	58.5	148.0	75.0	34.0	140.5	74.5
Merged-chr8-70646107-4	chr8	70645673	70646673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023217)	TTS (NM_023217)	13565.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	136.0	243.5	189.5	4.0	28.5	22.5
Merged-chr4-133666362-3	chr4	133665843	133666843	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356466, intron 2 of 3)	B1_Mur3|SINE|Alu	6304.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	22.5	18.0	18.5	19.5	58.0	22.0
Merged-chr10-126919255-4	chr10	126918756	126919756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17885.0	NM_001358970	68876.0	Mm.276769	NM_026858	ENSMUSG00000025436	Atp23	1110068E08Rik|2410012H02Rik|Xrcc6bp1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128838460-4	chr6	128837969	128838969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	4.5SRNA|scRNA|scRNA	-12154.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	22.5	44.5	19.5	13.5	60.0	15.0
Merged-chr6-108165106-4	chr6	108164592	108165592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145937, intron 3 of 8)	intron (NM_145937, intron 3 of 8)	20491.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	0.0	12.0	3.0	8.5	12.0	3.5
Merged-chr13-102717208-4	chr13	102716693	102717693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23635.0	NM_008533	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	11.0	30.5	12.5	6.0	35.5	22.0
Merged-chr11-115420034-4	chr11	115419505	115420505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183285)	promoter-TSS (NM_183285)	-86.0	NM_027862	71679.0	Mm.371641	NM_027862	ENSMUSG00000034566	Atp5h	0610009D10Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D	protein-coding	44.0	64.0	62.0	44.0	71.0	50.0
Merged-chr17-29443982-1	chr17	29443482	29444482	+	1000.0	f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-47063.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	11.5	13.0	11.0	2.5	6.0	4.5
Merged-chr18-37969835-4	chr18	37969310	37970310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175684)	promoter-TSS (NM_175684)	-79.0	NM_175684	319262.0	Mm.285060	NM_175684	ENSMUSG00000038524	Fchsd1	A030002D08Rik	FCH and double SH3 domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-108458740-4	chr4	108458247	108459247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175472)	promoter-TSS (NM_175472)	-679.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95990956-4	chr16	95990441	95991441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019537)	promoter-TSS (NM_019537)	19.0	NM_019537	56088.0	Mm.396248	NM_019537	ENSMUSG00000022913	Psmg1	AW552102|Dscr2	proteasome (prosome, macropain) assembly chaperone 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180849055-4	chr1	180848569	180849569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2082.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-68059232-4	chr18	68058746	68059746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	126073.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44334567-4	chr9	44334046	44335046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010436)	promoter-TSS (NM_010436)	-169.0	NM_010436	15270.0	Mm.245931	NM_010436	ENSMUSG00000049932	H2afx	AW228881|H2A.X|H2ax|Hist5-2ax|gammaH2ax	H2A histone family, member X	protein-coding	0.5	1.0	1.5	11.0	0.0	0.0
Merged-chr4-147941014-6	chr4	147940600	147941600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029841, exon 1 of 3)	exon (NM_029841, exon 1 of 3)	205.0	NM_029841	77034.0	Mm.183076	NM_029841	ENSMUSG00000044496	2510039O18Rik	Kiaa2013	RIKEN cDNA 2510039O18 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34188511-5	chr13	34188052	34189052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 10 of 10)	intron (NM_001033167, intron 10 of 10)	25588.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	22.0	44.5	46.5	20.5	45.0	34.0
Merged-chr19-32637443-4	chr19	32636934	32637934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360403, intron 3 of 11)	intron (NM_001360403, intron 3 of 11)	17429.0	NM_011864	23972.0	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148040231-2	chr4	148039731	148040731	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161798)	promoter-TSS (NM_001161798)	-958.0	NR_027809	17769.0	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	methylenetetrahydrofolate reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139726543-7	chr5	139725986	139726986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174850, intron 1 of 16)	ID_B1|SINE|B4	9847.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	103.0	228.0	162.5	82.5	274.5	176.5
Merged-chr13-49652920-4	chr13	49652413	49653413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073167)	promoter-TSS (NR_073167)	-165.0	NM_001271397	70930.0	Mm.258915	NM_001081350	ENSMUSG00000021392	Nol8	4921532D18Rik|5730412B09Rik	nucleolar protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-20945665-1	chr17	20945165	20946165	+	1000.0	f0_c57.idr	intron (NM_016891, intron 1 of 14)	CpG	211.0	NM_016891	51792.0	Mm.294138	NM_016891	ENSMUSG00000007564	Ppp2r1a	6330556D22Rik|PP2A|PR65	protein phosphatase 2, regulatory subunit A, alpha	protein-coding	48.5	77.5	97.5	37.5	55.0	85.0
Merged-chr17-69085676-4	chr17	69085184	69086184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355732, intron 1 of 21)	intron (NM_001355732, intron 1 of 21)	10007.0	NM_001355732	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	6.5	14.5	0.0	6.5	15.0	0.0
Merged-chr10-81297295-4	chr10	81296782	81297782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	4319.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-68598163-4	chr14	68597670	68598670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16098.0	NM_021475	58860.0	Mm.36742	NM_021475	ENSMUSG00000022057	Adamdec1	2210414L24Rik|AI574231|Dcsn	ADAM-like, decysin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30641916-4	chr14	30641402	30642402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12473.0	NM_177815	328370.0	Mm.259657	NM_177815	ENSMUSG00000052395	Rft1	D930025H04	RFT1 homolog	protein-coding	12.5	15.5	6.0	0.0	15.0	5.5
Merged-chr1-131080126-2	chr1	131079662	131080662	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	17681.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	4.0	2.5	2.5	3.5	10.5	1.0
Merged-chr11-53794993-4	chr11	53794508	53795508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	24535.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57542197-4	chr6	57541696	57542696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-6770.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55884940-4	chr14	55884440	55885440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019820)	promoter-TSS (NM_019820)	-2.0	NM_027143	219094.0	Mm.37592	NM_027143	ENSMUSG00000047153	Khnyn	6330555F21|9130227C08Rik|AI605259|Kiaa0323|mKIAA0323	KH and NYN domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30216983-4	chr7	30216478	30217478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14413.0	NM_001360648	66411.0	Mm.27947	NM_025548	ENSMUSG00000006095	Tbcb	2410007D12Rik|AU041393|CG22|CKAPI|Ckap1	tubulin folding cofactor B	protein-coding	6.5	11.0	18.5	0.0	10.0	7.5
Merged-chr13-54789236-4	chr13	54788721	54789721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028841)	promoter-TSS (NM_028841)	-184.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	4.5	22.0	5.0	9.5	0.5	9.0
Merged-chr15-76721369-2	chr15	76720864	76721864	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_176828)	TTS (NM_176828)	809.0	NM_198119	378937.0	Mm.289666	NM_198119	ENSMUSG00000033707	Lrrc24	6430402H13Rik	leucine rich repeat containing 24	protein-coding	1.0	1.0	1.5	0.0	1.0	0.5
Merged-chr17-31110444-4	chr17	31109932	31110932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 11 of 14)	ORR1E|LTR|ERVL-MaLR	19179.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	6.5	38.0	23.5	24.0	31.0	23.0
Merged-chr4-55530343-4	chr4	55529842	55530842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010637, exon 3 of 5)	exon (NM_010637, exon 3 of 5)	2133.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	11.0	8.0	6.5	0.0	2.0	1.5
Merged-chr17-15774121-4	chr17	15773606	15774606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52480.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	4.5	0.5	2.5	0.5	0.0	0.0
Merged-chr8-107002703-2	chr8	107002203	107003203	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009229, intron 5 of 6)	intron (NM_009229, intron 5 of 6)	-28623.0	NM_126165	116733.0	Mm.236004	NM_126165	ENSMUSG00000031913	Vps4a	4930589C15Rik|AI325971|AW553189	vacuolar protein sorting 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45686309-4	chr17	45685790	45686790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198167)	promoter-TSS (NM_198167)	-59.0	NM_026732	68463.0	Mm.379158	NM_026732	ENSMUSG00000023939	Mrpl14	1110006I11Rik|AI846816|MRP-L32|Rpml32	mitochondrial ribosomal protein L14	protein-coding	70.5	160.0	84.0	66.0	116.0	98.0
Merged-chr12-33156502-4	chr12	33155989	33156989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028139, intron 2 of 3)	ID4_|SINE|ID	8803.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	22.5	47.0	35.5	15.0	61.0	37.0
Merged-chr10-53630117-4	chr10	53629586	53630586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027830, exon 2 of 14)	exon (NM_027830, exon 2 of 14)	353.0	NM_027830	71567.0	Mm.278221	NM_027830	ENSMUSG00000058298	Mcm9	9030408O17Rik|Gm235|Mcmdc1	minichromosome maintenance 9 homologous recombination repair factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112396759-4	chr13	112396242	112397242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67328.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	14.0	29.5	19.5	24.5	42.0	12.0
Merged-chr15-103240873-4	chr15	103240383	103241383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039129, intron 1 of 10)	intron (NM_001039129, intron 1 of 10)	429.0	NR_002883	434858.0	Mm.391346	NR_002883		Gm5643	EG434858	heterogeneous nuclear ribonucleoprotein A1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76342070-2	chr15	76341528	76342528	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1495.0	NM_025567	66445.0	Mm.29196	NM_025567	ENSMUSG00000022551	Cyc1	2610002H19Rik|AA408921|Cyct1	cytochrome c-1	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr10-26836738-4	chr10	26836302	26837302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	64290.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95688341-4	chr4	95687829	95688829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029347, intron 5 of 10)	intron (NM_029347, intron 5 of 10)	108908.0	NM_029347	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19361164-4	chr7	19360653	19361653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001010836)	promoter-TSS (NM_001010836)	-63.0	NM_001010836	333654.0	Mm.333640	NM_001010836	ENSMUSG00000040734	Ppp1r13l	AV260376|IASPP|Nkip1|wa3	protein phosphatase 1, regulatory (inhibitor) subunit 13 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100651151-4	chr13	100650675	100651675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001283011)	promoter-TSS (NM_001283011)	-114.0	NM_001283011	19356.0	Mm.248489	NM_011233	ENSMUSG00000021635	Rad17	MmRad24	RAD17 checkpoint clamp loader component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21642237-4	chr16	21641769	21642769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 46 of 46)	intron (NM_001081366, intron 46 of 46)	52396.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47919310-4	chr19	47918799	47919799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001738)	promoter-TSS (NM_001001738)	0.0	NM_001001738	414801.0	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	68.5	192.5	147.0	91.0	214.5	157.0
Merged-chr3-108210975-2	chr3	108210475	108211475	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289545)	promoter-TSS (NM_001289545)	-448.0	NM_175183	72522.0	Mm.187326	NM_175183	ENSMUSG00000048997	Atxn7l2	2610528J18Rik	ataxin 7-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-89337482-4	chr7	89336977	89337977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 2 of 14)	MER5A1|DNA|hAT-Charlie	1310.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34197496-2	chr7	34196996	34197996	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360710)	promoter-TSS (NM_001360710)	-826.0	NM_001360710	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-149947164-4	chr1	149946660	149947660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	14130.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69101764-2	chr11	69101264	69102264	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011065, exon 6 of 23)	exon (NM_011065, exon 6 of 23)	1612.0	NM_001159367	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95041440-4	chr11	95040928	95041928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133667)	promoter-TSS (NM_133667)	-57.0	NM_133667	18604.0	Mm.29768	NM_133667	ENSMUSG00000038967	Pdk2	-	pyruvate dehydrogenase kinase, isoenzyme 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42502676-4	chr10	42502169	42503169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017472, intron 1 of 3)	CpG	615.0	NM_017472	54198.0	Mm.277870	NM_017472	ENSMUSG00000019804	Snx3	SDP3	sorting nexin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54988991-4	chr11	54988496	54989496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 19 of 24)	L1MB3|LINE|L1	-26056.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19083950-4	chr7	19083462	19084462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_126095, exon 1 of 15)	non-coding (NR_126095, exon 1 of 15)	113.0	NM_001190491	13400.0	Mm.6529	NM_032418	ENSMUSG00000030409	Dmpk	DM|DMK|Dm15|MDPK|MT-PK	dystrophia myotonica-protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70015374-4	chr11	70014870	70015870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017366)	promoter-TSS (NM_017366)	58.0	NM_017366	11370.0	Mm.18630	NM_017366	ENSMUSG00000018574	Acadvl	vlcad	acyl-Coenzyme A dehydrogenase, very long chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-16997003-4	chr10	16996500	16997500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038020, intron 1 of 8)	intron (NR_038020, intron 1 of 8)	98782.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	8.5	10.5	6.5	0.0	5.0	3.0
Merged-chr15-79347467-4	chr15	79346929	79347929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304831)	promoter-TSS (NM_001304831)	-91.0	NM_010755	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	3.0	10.5	8.0	0.0	3.0	10.5
Merged-chr17-63849748-4	chr17	63849233	63850233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-14248.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-11657782-4	chr18	11657294	11658294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081223, intron 1 of 18)	CpG	445.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	71.5	225.0	141.5	91.0	209.5	138.0
Merged-chr10-117865877-3	chr10	117865367	117866367	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-19893.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117122473-1	chr4	117121973	117122973	+	1000.0	f1_balb.idr	intron (NR_024078, intron 3 of 6)	intron (NR_024078, intron 3 of 6)	3252.0	NR_024078	78611.0	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	17.5	21.5	4.0	9.5	9.0	6.5
Merged-chr4-150917869-2	chr4	150917369	150918369	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2286.0	NM_011612	21942.0	Mm.244187	NM_011612	ENSMUSG00000028965	Tnfrsf9	4-1BB|A930040I11Rik|AA408498|AI325004|CDw137|Cd137|ILA|Ly63	tumor necrosis factor receptor superfamily, member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99632781-4	chr10	99632281	99633281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038019, intron 1 of 2)	intron (NR_038019, intron 1 of 2)	9139.0	NR_038018	100417125.0	Mm.391428	NR_038018	ENSMUSG00000112503	Gm18409	-	mediator of cell motility 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-144215484-4	chr1	144214982	144215982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33622.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45300601-4	chr9	45300077	45301077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18523.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122318332-4	chr5	122317838	122318838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177242, intron 4 of 5)	intron (NM_177242, intron 4 of 5)	33940.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85811981-2	chr11	85811481	85812481	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_077059, intron 1 of 4)	intron (NR_077059, intron 1 of 4)	20407.0	NR_077059	69909.0	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9636727-2	chr13	9636227	9637227	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 30 of 36)	intron (NM_001081426, intron 30 of 36)	127083.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-122985321-4	chr4	122984823	122985823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10608.0	NM_001303121	16918.0	Mm.1055	NM_008506	ENSMUSG00000028654	Mycl	AW536278|L-myc|Lmyc-1|Lmyc1|Mycl1|bHLHe38	v-myc avian myelocytomatosis viral oncogene lung carcinoma derived	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73361229-4	chr17	73360719	73361719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033444, intron 4 of 22)	intron (NM_001033444, intron 4 of 22)	38077.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-61397002-4	chr3	61396503	61397503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32496.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-92270014-4	chr9	92269498	92270498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011636, intron 8 of 8)	intron (NM_011636, intron 8 of 8)	-2637.0	NR_105808	102465203.0		NR_105808	ENSMUSG00000098766	Mir6386	Gm27842|mmu-mir-6386	microRNA 6386	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35282588-4	chr9	35282105	35283105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040715, intron 2 of 4)	intron (NR_040715, intron 2 of 4)	1500.0	NR_040715	71133.0	Mm.158577	NR_040715	ENSMUSG00000111746	4933422A05Rik	-	RIKEN cDNA 4933422A05 gene	ncRNA	0.0	21.5	2.5	8.5	6.5	7.0
Merged-chr10-91082880-4	chr10	91082391	91083391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009684)	promoter-TSS (NM_009684)	-148.0	NM_009684	11783.0	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	35.0	127.0	79.0	32.5	83.5	59.0
Merged-chr6-87811953-7	chr6	87811441	87812441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039394)	promoter-TSS (NM_001039394)	157.0	NR_104477	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120193332-4	chr6	120192835	120193835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347432)	promoter-TSS (NM_001347432)	-488.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-45333748-4	chr8	45333242	45334242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133969)	promoter-TSS (NM_133969)	-546.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152798982-2	chr1	152798482	152799482	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	-1171.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-19575076-4	chr4	19574570	19575570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025476)	promoter-TSS (NM_025476)	4.0	NM_025476	66302.0	Mm.440686	NM_025476	ENSMUSG00000028229	Rmdn1	Fam82b|RMD-1	regulator of microtubule dynamics 1	protein-coding	77.0	233.5	211.0	141.0	304.5	284.0
Merged-chr16-90459215-4	chr16	90458719	90459719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015755, intron 4 of 10)	intron (NM_015755, intron 4 of 10)	72822.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50703991-4	chr15	50703503	50704503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	185046.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123851066-5	chr9	123850627	123851627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148925, intron 1 of 18)	intron (NM_148925, intron 1 of 18)	534.0	NM_148925	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79649597-2	chr10	79649097	79650097	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3859.0	NM_001033473	382384.0	Mm.244510	NM_001033473	ENSMUSG00000035963	Odf3l2	Gm1157	outer dense fiber of sperm tails 3-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43038912-4	chr17	43038407	43039407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 2 of 5)	intron (NM_178589, intron 2 of 5)	22352.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	1.5	7.0	5.5	5.5	7.0	7.0
Merged-chr13-113591516-4	chr13	113591022	113592022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_130796)	TTS (NM_130796)	27042.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-58916748-4	chr6	58916233	58917233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361966, intron 24 of 25)	intron (NM_001361966, intron 24 of 25)	-9607.0	NM_021432	58243.0	Mm.389747	NM_021432	ENSMUSG00000055430	Nap1l5	1110020M21Rik	nucleosome assembly protein 1-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-5277147-4	chr12	5276627	5277627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164493, intron 2 of 13)	intron (NM_001164493, intron 2 of 13)	98555.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-3481901-4	chr6	3481397	3482397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178899, intron 3 of 9)	intron (NM_178899, intron 3 of 9)	12601.0	NM_178899	101202.0	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	20.0	40.5	45.0	18.5	35.5	11.5
Merged-chr14-75229164-2	chr14	75228664	75229664	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 16 of 16)	intron (NM_008879, intron 16 of 16)	-13123.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111508786-4	chr13	111508295	111509295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18668.0	NM_001361924	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34875485-4	chr6	34874995	34875995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_197986)	TTS (NM_197986)	2570.0	NM_199145	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108781389-4	chr8	108780873	108781873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	66729.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	4.5	34.5	11.0	4.5	59.0	38.5
Merged-chr6-38692255-4	chr6	38691744	38692744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29175.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154551908-2	chr2	154551408	154552408	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001171640, exon 1 of 1)	5' UTR (NM_001171640, exon 1 of 1)	132.0	NM_001171640	70362.0	Mm.479620	NM_001171640	ENSMUSG00000078129	Actl10	1700007I08Rik	actin-like 10	protein-coding	0.0	5.5	0.5	0.5	0.0	0.0
Merged-chr4-133757534-4	chr4	133757026	133758026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3915.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	35.0	21.5	17.5	22.0	11.5	12.0
Merged-chr7-132323610-4	chr7	132323100	132324100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6372.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121383393-2	chr5	121382893	121383893	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359947, intron 2 of 11)	intron (NM_001359947, intron 2 of 11)	2016.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	29.0	65.5	55.0	24.5	68.5	59.5
Merged-chr9-13827572-4	chr9	13827074	13828074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310721)	promoter-TSS (NM_001310721)	-142.0	NM_001358259	72826.0	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97610131-4	chr3	97609611	97610611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026539)	promoter-TSS (NM_026539)	79.0	NM_026539	68058.0	Mm.31761	NM_026539	ENSMUSG00000028089	Chd1l	4432404A22Rik|Alc1|Snf2p	chromodomain helicase DNA binding protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-107293402-4	chr8	107292900	107293900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133957)	promoter-TSS (NM_133957)	-70.0	NM_018823	54446.0	Mm.390057	NM_018823	ENSMUSG00000003847	Nfat5	AI225870|B130038B15Rik|CAG-8|CAG80|NFATL1|OREBP|TonEBP|mKIAA0827|nfatz	nuclear factor of activated T cells 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-3832156-4	chr10	3831650	3832650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159942, intron 2 of 16)	intron (NM_001159942, intron 2 of 16)	-40517.0	NM_001033253	213783.0	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97149360-2	chr11	97148860	97149860	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198100, intron 1 of 8)	intron (NM_198100, intron 1 of 8)	352.0	NM_198100	73174.0	Mm.27882	NM_198100	ENSMUSG00000038517	Tbkbp1	3110043L15Rik|ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101580044-4	chr11	101579558	101580558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008676, intron 23 of 23)	intron (NM_008676, intron 23 of 23)	-2184.0	NM_001359326	217203.0	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-133638243-3	chr7	133637794	133638794	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178115, intron 1 of 24)	CpG	619.0	NM_178115	214764.0	Mm.174044	NM_145995	ENSMUSG00000039990	Edrf1	2700050L05Rik|AU022667|AW558805	erythroid differentiation regulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34781144-2	chr6	34780644	34781644	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178630, intron 1 of 18)	intron (NM_178630, intron 1 of 18)	712.0	NM_001289656	76223.0	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-66077104-4	chr17	66076606	66077606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025572)	promoter-TSS (NM_001025572)	-60.0	NM_001025572	106585.0	Mm.34706	NM_001025572	ENSMUSG00000034647	Ankrd12	2900001A12Rik|AI447928|ANCO-2|AV347965|GAC-1|mKIAA0874	ankyrin repeat domain 12	protein-coding	44.0	67.5	83.0	41.0	56.0	80.0
Merged-chr1-119504328-4	chr1	119503835	119504835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022327, intron 1 of 4)	intron (NM_022327, intron 1 of 4)	447.0	NM_022327	64143.0	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	21.0	80.5	70.5	53.0	46.5	54.5
Merged-chr15-76702157-4	chr15	76701668	76702668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027122, exon 1 of 5)	exon (NM_027122, exon 1 of 5)	626.0	NM_027122	69572.0	Mm.34920	NM_027122	ENSMUSG00000019080	Mfsd3	2310010G13Rik	major facilitator superfamily domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-119065657-4	chr10	119065188	119066188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15189.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0.5	18.5	4.0	2.0	12.5	0.5
Merged-chr17-86581008-1	chr17	86580508	86581508	+	1000.0	f1_c57bl6.idr	intron (NM_011104, intron 11 of 14)	intron (NM_011104, intron 11 of 14)	-172856.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	4.0	4.0	0.0	6.5	0.5	0.0
Merged-chr5-123047299-2	chr5	123046799	123047799	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347456)	promoter-TSS (NM_001347456)	-283.0	NM_001347456	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45089698-4	chr2	45089197	45090197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	20580.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134532594-4	chr5	134532085	134533085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039162, intron 2 of 15)	intron (NM_001039162, intron 2 of 15)	19849.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95699396-4	chr9	95698894	95699894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR87|LTR|ERVL?	50964.0	NM_001311123	22063.0	Mm.149633	NM_011643	ENSMUSG00000032839	Trpc1	Mtrp1|Trp1|Trrp1	transient receptor potential cation channel, subfamily C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4214197-4	chr16	4213686	4214686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025432)	promoter-TSS (NM_001025432)	-782.0	NM_001025432	12914.0	Mm.132238	NM_001025432	ENSMUSG00000022521	Crebbp	AW558298|CBP|CBP/p300|KAT3A|p300/CBP	CREB binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-86989996-4	chr10	86989444	86990444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 3 of 68)	intron (NM_138673, intron 3 of 68)	17998.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-53689377-4	chr17	53688892	53689892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028232)	promoter-TSS (NM_028232)	-77.0	NM_028232	72415.0	Mm.153202	NM_028232	ENSMUSG00000023940	Sgo1	3300001M08Rik|C81037|Sgol1	shugoshin 1	protein-coding	28.5	96.0	68.0	21.5	61.0	46.0
Merged-chr5-65867516-4	chr5	65866992	65867992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	3923.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	29.0	93.0	34.5	14.0	65.5	45.0
Merged-chr6-11907740-4	chr6	11907161	11908161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010886)	promoter-TSS (NM_010886)	-168.0	NM_001362123	75725.0	Mm.212411	NM_029404	ENSMUSG00000029629	Phf14	1110001C23Rik|4932409F11Rik|5730446A07Rik|AA623952|AV297001|mKIAA0783	PHD finger protein 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-70825120-4	chr2	70824637	70825637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172664, intron 1 of 19)	CpG	343.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88403663-4	chr3	88403141	88404141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025928, intron 1 of 4)	(A)n|Simple_repeat|Simple_repeat	6756.0	NM_001310605	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25550866-4	chr15	25550374	25551374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71676.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88146968-4	chr10	88146465	88147465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027191)	promoter-TSS (NM_027191)	-24.0	NM_029249	75317.0	Mm.179378	NM_029249	ENSMUSG00000035365	Parpbp	4930547N16Rik|AI503644|PARI	PARP1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119778486-4	chr8	119777962	119778962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028883)	promoter-TSS (NM_028883)	-46.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77972002-4	chr10	77971501	77972501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2129.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31385445-2	chr14	31384941	31385941	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001347585, intron 3 of 7)	intron (NM_001347585, intron 3 of 7)	32236.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16820546-4	chr7	16820043	16821043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039878, intron 1 of 17)	intron (NM_001039878, intron 1 of 17)	-3811.0	NM_173430	243853.0	Mm.39703	NM_173430	ENSMUSG00000048920	Fkrp	A830029B19Rik|AI842067|AI847300|LGMD1I|MDC1C	fukutin related protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-65528083-4	chr6	65527583	65528583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-62315.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-34785298-2	chr4	34784798	34785798	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6932.0	NM_025471	66291.0	Mm.28071	NM_025471	ENSMUSG00000028295	Smim8	1810030N24Rik|2810406B13Rik	small integral membrane protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45906461-4	chr9	45905974	45906974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281934)	promoter-TSS (NM_001281934)	-95.0	NM_001281934	18554.0	Mm.3255	NM_008794	ENSMUSG00000035382	Pcsk7	AA959856|PC7|SPC7	proprotein convertase subtilisin/kexin type 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-16114497-4	chr9	16114007	16115007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	-239951.0	NM_145712	244701.0	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40840625-4	chr4	40840113	40841113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	9525.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37228089-4	chr10	37227609	37228609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89183.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49778754-3	chr7	49778253	49779253	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133740, intron 2 of 15)	CpG-13170	395.0	NM_133740	71974.0	Mm.33202	NM_133740	ENSMUSG00000030505	Prmt3	2010005E20Rik|2410018A17Rik|AL033309|Hrmt1l3	protein arginine N-methyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29278722-4	chr6	29278208	29279208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2433.0	NM_001101486	245884.0	Mm.33683	NM_001101486	ENSMUSG00000079652	Fam71f2	AI507611|GARI	family with sequence similarity 71, member F2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-18713690-2	chr19	18713190	18714190	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177640, intron 1 of 1)	CpG	454.0	NM_177640	225995.0	Mm.28101	NM_177640	ENSMUSG00000047044	D030056L22Rik	-	RIKEN cDNA D030056L22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51341291-4	chr3	51340796	51341796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291059)	promoter-TSS (NM_001291059)	-652.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25634319-4	chr15	25633819	25634819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 1 of 40)	intron (NM_019472, intron 1 of 40)	11769.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54089059-4	chr11	54088583	54089583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11841.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-30033331-4	chr19	30032823	30033823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144873, intron 1 of 15)	intron (NM_144873, intron 1 of 15)	2810.0	NM_144873	109113.0	Mm.313364	NM_144873	ENSMUSG00000024817	Uhrf2	2310065A22Rik|AI426270|AW214556|D130071B19Rik|Nirf	ubiquitin-like, containing PHD and RING finger domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-75921136-2	chr16	75920636	75921636	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11870.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-23256712-2	chr8	23256236	23257236	+	1000.0	f0_balb.idr|f0_c57.idr	exon (NM_001042484, exon 2 of 6)	exon (NM_001042484, exon 2 of 6)	344.0	NM_020585	57437.0	Mm.196269	NM_020585	ENSMUSG00000015341	Golga7	AB041568|C130038N16Rik|GCP16|GOLGA3AP1|HSPC041|R75586	golgi autoantigen, golgin subfamily a, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98948151-2	chr7	98947651	98948651	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 12 of 14)	RMER19A|LTR|ERVK	109306.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr12-86947301-4	chr12	86946800	86947800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289432)	promoter-TSS (NM_001289432)	-43.0	NM_173735	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94589574-4	chr11	94589064	94590064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153807, intron 1 of 15)	intron (NM_153807, intron 1 of 15)	12222.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	38.5	93.0	60.0	34.0	110.0	50.5
Merged-chr5-144965212-4	chr5	144964730	144965730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038627, intron 1 of 17)	CpG	600.0	NM_001038627	75788.0	Mm.27735	NM_029438	ENSMUSG00000038780	Smurf1	4930431E10Rik|mKIAA1625	SMAD specific E3 ubiquitin protein ligase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156437520-4	chr1	156437029	156438029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 11 of 15)	intron (NM_009230, intron 11 of 15)	-16614.0	NM_001346967	77352.0	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	33.5	98.0	65.0	45.0	146.0	63.0
Merged-chr9-35305449-4	chr9	35304951	35305951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	24346.0	NR_040715	71133.0	Mm.158577	NR_040715	ENSMUSG00000111746	4933422A05Rik	-	RIKEN cDNA 4933422A05 gene	ncRNA	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr15-53474332-4	chr15	53473823	53474823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	-128140.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72390202-4	chr6	72389676	72390676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016794, intron 1 of 2)	intron (NM_016794, intron 1 of 2)	491.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22010395-4	chr16	22009893	22010893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357424, intron 1 of 15)	intron (NM_001357424, intron 1 of 15)	909.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66242915-4	chr14	66242434	66243434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-29110.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144697337-4	chr3	144696845	144697845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 8 of 10)	(T)n|Simple_repeat|Simple_repeat	22990.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145283232-4	chr7	145282732	145283732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132643, intron 1 of 22)	intron (NR_132643, intron 1 of 22)	779.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	51.5	95.5	73.0	32.0	110.0	76.5
Merged-chr5-100518310-4	chr5	100517820	100518820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012001)	promoter-TSS (NM_012001)	11.0	NM_001359204	26891.0	Mm.957	NM_012001	ENSMUSG00000035297	Cops4	AW208976|D5Ertd774e|SGN4	COP9 signalosome subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84687856-4	chr8	84687356	84688356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025788)	promoter-TSS (NM_025788)	6.0	NM_025788	66830.0	Mm.289698	NM_025788	ENSMUSG00000001910	Nacc1	2010001H03Rik|4930511N13Rik|Btbd14b|Nac1	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	protein-coding	13.0	44.0	31.5	18.5	29.5	11.0
Merged-chr2-75659803-4	chr2	75659270	75660270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146130, intron 1 of 10)	CpG	480.0	NR_033513	627828.0	Mm.459502	NR_033513	ENSMUSG00000092086	Gm6793	EG627828	heterogeneous nuclear ribonucleoprotein A3 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172470194-3	chr1	172469688	172470688	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR78|LTR|ERV1	-5172.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	62.0	77.0	85.5	2.5	9.5	5.0
Merged-chr2-43761984-4	chr2	43761468	43762468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 1 of 14)	intron (NM_001301831, intron 1 of 14)	13144.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-7693110-4	chr18	7692635	7693635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-66272.0	NM_001161620	75739.0	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	0.0	7.5	8.0	3.5	2.5	0.5
Merged-chr5-140733491-4	chr5	140732999	140733999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	MTE2a|LTR|ERVL-MaLR	9372.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-93996831-4	chr11	93996296	93997296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027569, intron 1 of 28)	intron (NM_027569, intron 1 of 28)	705.0	NM_027569	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91839623-4	chr16	91839121	91840121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010587, exon 18 of 39)	exon (NM_010587, exon 18 of 39)	92009.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34434951-4	chr1	34434442	34435442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1743.0	NR_039562	100628580.0		NR_039562	ENSMUSG00000092852	Mir5103	mir-5103|mmu-mir-5103|mu-mir-5103	microRNA 5103	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62548851-4	chr18	62548334	62549334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177829)	promoter-TSS (NM_177829)	29.0	NM_134136	107035.0	Mm.21295	NM_134136	ENSMUSG00000042211	Fbxo38	6030410I24Rik|AU044865|AW214031|Moka|SP329	F-box protein 38	protein-coding	109.5	218.0	213.0	82.0	234.0	224.5
Merged-chr8-78626839-4	chr8	78626346	78627346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009981, intron 5 of 10)	intron (NM_001009981, intron 5 of 10)	117518.0	NM_001282108	76775.0	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119322841-4	chr9	119322372	119323372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045693)	promoter-TSS (NR_045693)	-445.0	NM_133985	108737.0	Mm.293565	NM_133985	ENSMUSG00000036737	Oxsr1	2210022N24Rik|2810422B09Rik|AI462649|AW209236|Osr1|mKIAA1101	oxidative-stress responsive 1	protein-coding	133.5	344.0	324.5	136.5	363.5	273.0
Merged-chr14-70351445-4	chr14	70350964	70351964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001135151)	promoter-TSS (NM_001135151)	-40.0	NM_001135151	213053.0	Mm.270647	NM_144808	ENSMUSG00000022094	Slc39a14	FAD-123|ZIP-14|Zip14|fad123	solute carrier family 39 (zinc transporter), member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-179803813-4	chr1	179803333	179804333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026375, exon 1 of 36)	5' UTR (NM_026375, exon 1 of 36)	182.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101933962-4	chr7	101933460	101934460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027053)	promoter-TSS (NM_027053)	-103.0	NM_001162974	69358.0	Mm.214841	NM_027053	ENSMUSG00000064307	Lrrc51	1700008D07Rik|Lrtomt	leucine rich repeat containing 51	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139248257-4	chr7	139247741	139248741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033206)	promoter-TSS (NM_001033206)	-241.0	NM_001033206	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	52.0	150.5	155.0	82.0	164.5	123.5
Merged-chr16-18289032-1	chr16	18288532	18289532	+	1000.0	f0_c57.idr	intron (NM_033324, intron 1 of 13)	CpG	136.0	NM_033324	94223.0	Mm.447352	NM_033324	ENSMUSG00000022718	Dgcr8	D16H22S1742E|D16H22S788E|D16Wis2|Gy1|N41|Vo59c07|mir-1306	DGCR8, microprocessor complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80564774-4	chr17	80564287	80565287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033443)	promoter-TSS (NM_001033443)	-953.0	NM_001033443	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-17660910-4	chr14	17660413	17661413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113417)	promoter-TSS (NM_001113417)	-47.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152904675-4	chr1	152904169	152905169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2023.0	NM_001005507	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-154175551-4	chr1	154175056	154176056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-25631.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-40733989-4	chr11	40733461	40734461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013552)	promoter-TSS (NM_013552)	300.0	NM_001290697	52653.0	Mm.276504	NM_026023	ENSMUSG00000020328	Nudcd2	-	NudC domain containing 2	protein-coding	0.0	3.0	0.0	0.0	0.0	1.0
Merged-chr19-5931756-4	chr19	5931253	5932253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6937.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5951417-4	chr2	5950919	5951919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081132)	promoter-TSS (NM_001081132)	-50.0	NM_001081132	326622.0	Mm.31102	NM_001081132	ENSMUSG00000043241	Upf2	-	UPF2 regulator of nonsense transcripts homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94035978-4	chr10	94035465	94036465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304572)	promoter-TSS (NM_001304572)	-36.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	26.5	25.5	27.5	0.0	2.5	4.0
Merged-chr2-71662200-4	chr2	71661692	71662692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	Arthur1|DNA|hAT-Tip100	-57225.0	NR_037979	381371.0	Mm.330284	NM_201366	ENSMUSG00000064263	Platr26	Gm1631	pluripotency associated transcript 26	ncRNA	24.5	41.5	26.0	14.0	39.5	38.5
Merged-chr17-28750224-2	chr17	28749724	28750724	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19093.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155145293-2	chr1	155144793	155145793	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008209, intron 1 of 5)	intron (NM_008209, intron 1 of 5)	1521.0	NM_001355063	15064.0	Mm.7580	NM_008209	ENSMUSG00000026471	Mr1	H2ls	major histocompatibility complex, class I-related	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-76071047-4	chr2	76070550	76071550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081033, intron 12 of 19)	intron (NM_001081033, intron 12 of 19)	-89083.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92375549-4	chr5	92375034	92376034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-12238.0	NR_038116	56066.0	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	134.0	343.5	221.5	194.0	317.0	236.0
Merged-chr11-53795385-2	chr11	53794871	53795871	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	24898.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-58844267-4	chr7	58843768	58844768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	186066.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63721755-4	chr9	63721281	63722281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	36213.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128962515-4	chr4	128962013	128963013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172875)	promoter-TSS (NM_172875)	-58.0	NM_001301841	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107547256-4	chr9	107546718	107547718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053253)	promoter-TSS (NM_053253)	-92.0	NM_053253	114602.0	Mm.28331	NM_053253	ENSMUSG00000010044	Zmynd10	Blu	zinc finger, MYND domain containing 10	protein-coding	6.5	6.0	16.0	4.5	3.0	6.0
Merged-chr11-106500842-4	chr11	106500316	106501316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030703)	promoter-TSS (NR_030703)	-175.0	NR_030703	100216537.0		NR_030703	ENSMUSG00000065126	Snord104	-	small nucleolar RNA, C/D box 104	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26917924-1	chr17	26917424	26918424	+	1000.0	f1_balb.idr	intron (NM_053173, intron 1 of 10)	intron (NM_053173, intron 1 of 10)	833.0	NM_053173	16580.0	Mm.491138	NM_016761	ENSMUSG00000024301	Kifc5b	Hset|KNSL2|Kifc5a	kinesin family member C5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18056632-4	chr2	18056141	18057141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149308, intron 1 of 9)	CpG	913.0	NR_149308	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-89028048-4	chr11	89027550	89028550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	28647.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	116.5	484.0	228.0	74.5	233.5	136.0
Merged-chr14-54464168-4	chr14	54463677	54464677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022993)	promoter-TSS (NM_022993)	30.0	NM_022993	65107.0	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	39.5	80.5	73.5	35.5	94.0	51.0
Merged-chr19-32179703-4	chr19	32179186	32180186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	31327.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-69398019-5	chr9	69397582	69398582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145618)	promoter-TSS (NM_145618)	84.0	NM_145618	93697.0	Mm.35911	NM_145618	ENSMUSG00000032235	Ice2	B230343B06Rik|Narg2	interactor of little elongation complex ELL subunit 2	protein-coding	17.5	25.0	25.0	22.5	48.5	22.0
Merged-chr10-98609610-4	chr10	98609119	98610119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-257752.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28486192-4	chr17	28485676	28486676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010220)	promoter-TSS (NM_010220)	-27.0	NM_010220	14229.0	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113382984-4	chr13	113382485	113383485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	119859.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173538737-4	chr2	173538209	173539209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16117.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	6.5	12.0	13.5	6.5	10.5	16.0
Merged-chr14-63119722-4	chr14	63119233	63120233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-2729.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122990089-4	chr6	122989570	122990570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005860)	promoter-TSS (NM_001005860)	-297.0	NM_001005860	474145.0	Mm.263483	NM_001005860	ENSMUSG00000059639	Clec4a4	Dcir2	C-type lectin domain family 4, member a4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-51877409-4	chr15	51876929	51877929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030132)	promoter-TSS (NM_030132)	-12.0	NM_030132	78581.0	Mm.176347	NM_030132	ENSMUSG00000022313	Utp23	1700010I21Rik|AI662478|BB238373|D530033C11Rik	UTP23 small subunit processome component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3308507-4	chr8	3308005	3309005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44-int|LTR|ERVK	-28888.0	NM_001330056	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148486364-4	chr5	148485875	148486875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65298.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6335803-4	chr4	6335299	6336299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-29881.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	5.5	27.0	29.0	6.5	23.0	17.0
Merged-chr13-54223443-4	chr13	54222946	54223946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153432, intron 3 of 3)	intron (NR_153432, intron 3 of 3)	31313.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	0.0	2.0	10.5	3.0	2.5	3.0
Merged-chr2-163645132-4	chr2	163644642	163645642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012032)	promoter-TSS (NM_012032)	1.0	NM_012032	26943.0	Mm.218473	NM_012032	ENSMUSG00000017707	Serinc3	AA959945|AA960047|AIGP1|DIFF33|TMS-1|Tde1	serine incorporator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140505511-4	chr5	140505025	140506025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021528)	promoter-TSS (NM_021528)	-84.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-5256039-4	chr16	5255518	5256518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027446)	promoter-TSS (NM_027446)	-62.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62662649-2	chr4	62662149	62663149	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134257, intron 10 of 15)	intron (NM_134257, intron 10 of 15)	-11325.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124686782-2	chr6	124686282	124687282	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_149320, intron 1 of 11)	B2_Mm2|SINE|B2	23678.0	NM_145130	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52576281-4	chr13	52575749	52576749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3024.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76628817-4	chr11	76628336	76629336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43634.0	NM_177182	320522.0	Mm.131585	NM_177182	ENSMUSG00000044243	Bhlha9	A830053O21Rik|Fingerin	basic helix-loop-helix family, member a9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-74871494-4	chr9	74870984	74871984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008262, intron 1 of 1)	intron (NM_008262, intron 1 of 1)	9563.0	NM_008262	15379.0	Mm.303355	NM_008262	ENSMUSG00000043013	Onecut1	D9Ertd423e|HNF-6|Hfh12|Hnf6|Hnf6b|OC-1|Oc1	one cut domain, family member 1	protein-coding	2.0	1.0	2.0	5.5	4.0	1.0
Merged-chr11-44417616-4	chr11	44417126	44418126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17563.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	39.5	96.5	67.0	21.5	31.5	48.0
Merged-chr6-129407486-4	chr6	129406985	129407985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1377.0	NM_001205363	232414.0	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25493722-4	chr14	25493240	25494240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	34555.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-5416223-4	chr15	5415716	5416716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80102.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116433950-4	chr11	116433415	116434415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003376)	promoter-TSS (NR_003376)	-179.0	NM_176902	319370.0	Mm.258466	NM_176902	ENSMUSG00000050628	Ubald2	1110014K08Rik|D030012E24Rik|Fam100b	UBA-like domain containing 2	protein-coding	39.5	106.0	77.5	17.5	52.5	49.0
Merged-chr6-134897505-3	chr6	134897034	134898034	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029441)	promoter-TSS (NR_029441)	291.0	NM_001167695	14760.0	Mm.4787	NM_008157	ENSMUSG00000032641	Gpr19	-	G protein-coupled receptor 19	protein-coding	62.0	107.5	128.5	81.0	187.5	103.5
Merged-chr14-70402600-4	chr14	70402086	70403086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021308, intron 10 of 22)	B3A|SINE|B2	26508.0	NM_021308	57746.0	Mm.85253	NM_021308	ENSMUSG00000033644	Piwil2	Piwil1l|mili	piwi-like RNA-mediated gene silencing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76251920-4	chr15	76251413	76252413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3722.0	NR_105918	102465575.0		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80233966-4	chr15	80233461	80234461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178719)	promoter-TSS (NM_178719)	-119.0	NM_001357659	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	71.0	150.0	88.0	59.5	141.0	145.5
Merged-chr4-149076159-4	chr4	149075712	149076712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019781, intron 1 of 8)	intron (NM_019781, intron 1 of 8)	23600.0	NM_019781	56273.0	Mm.184172	NM_019781	ENSMUSG00000028975	Pex14	Pex14p|R75137	peroxisomal biogenesis factor 14	protein-coding	0.0	0.0	3.0	2.5	5.5	5.0
Merged-chr10-24634449-4	chr10	24633946	24634946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39004.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69502545-3	chr12	69502037	69503037	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26987.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	147.5	353.5	288.0	152.0	355.5	197.5
Merged-chr19-47406700-4	chr19	47406181	47407181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 2 of 14)	ID_B1|SINE|B4	57730.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	4.5	9.0	12.5	5.0	5.0	14.0
Merged-chr6-123227732-4	chr6	123227225	123228225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2118.0	NM_001190320	56620.0	Mm.271782	NM_020001	ENSMUSG00000023349	Clec4n	Clec6a|Clecsf10|Nkcl	C-type lectin domain family 4, member n	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57707914-4	chr6	57707415	57708415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133737, intron 1 of 8)	L1_Mur3|LINE|L1	5460.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42518797-4	chr19	42518319	42519319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177464)	promoter-TSS (NM_177464)	14.0	NM_177464	52013.0	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	18.5	17.5	54.5	0.0	22.0	14.0
Merged-chr3-103378253-4	chr3	103377774	103378774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57D|LTR|ERV1	98981.0	NM_053170	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	12.5	27.5	16.0	7.5	7.5	8.5
Merged-chr5-149636341-4	chr5	149635825	149636825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013559)	promoter-TSS (NM_013559)	-10.0	NM_013559	15505.0	Mm.270681	NM_013559	ENSMUSG00000029657	Hsph1	105kDa|AI790491|Hsp105|Hsp110|hsp-E7I|hsp110/105	heat shock 105kDa/110kDa protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111272515-2	chr9	111272015	111273015	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026810)	promoter-TSS (NM_026810)	670.0	NM_175266	77781.0	Mm.209005	NM_175266	ENSMUSG00000046785	Epm2aip1	A930003G21Rik|mKIAA0766	EPM2A (laforin) interacting protein 1	protein-coding	68.5	135.0	92.0	73.5	118.5	87.0
Merged-chr15-83149175-4	chr15	83148670	83149670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_004432)	promoter-TSS (NR_004432)	208.0	NM_178627	73826.0	Mm.23758	NM_178627	ENSMUSG00000041815	Poldip3	1110008P04Rik|AA408269|AL022852|C77954|PDIP46|SKAR|mKIAA1649	polymerase (DNA-directed), delta interacting protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31423282-4	chr14	31422780	31423780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	-5603.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65569647-4	chr9	65569163	65570163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 2 of 5)	intron (NM_153119, intron 2 of 5)	10424.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-58197058-4	chr2	58196534	58197534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	33060.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36934951-4	chr16	36934418	36935418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008225)	promoter-TSS (NM_008225)	-65.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83566748-4	chr8	83566255	83567255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025843)	promoter-TSS (NM_025843)	-3.0	NM_025843	66916.0	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	25.0	59.5	58.0	27.0	112.0	65.5
Merged-chr10-62551304-2	chr10	62550804	62551804	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-23859.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120075645-4	chr1	120075140	120076140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1860.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	105.5	202.5	145.0	91.5	178.5	111.5
Merged-chr19-41345656-4	chr19	41345150	41346150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	39420.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146829697-3	chr5	146829191	146830191	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3199.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	80.5	235.0	155.0	4.0	29.0	10.0
Merged-chr6-54593256-4	chr6	54592757	54593757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153573)	promoter-TSS (NM_153573)	-129.0	NM_153573	231997.0	Mm.274693	NM_153573	ENSMUSG00000038074	Fkbp14	BC029109|FKBP-14|FKBP22	FK506 binding protein 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7020299-4	chr19	7019758	7020758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153795)	promoter-TSS (NM_153795)	-789.0	NM_001362399	108101.0	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54985198-4	chr12	54984695	54985695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013815, intron 2 of 26)	CpG	1141.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	44.0	154.5	123.0	42.5	153.0	120.0
Merged-chr6-65585595-4	chr6	65585093	65586093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4805.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108765052-4	chr12	108764575	108765575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28236.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-151542524-4	chr2	151542021	151543021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302078)	promoter-TSS (NM_001302078)	38.0	NM_001302078	14225.0	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18412202-4	chr16	18411702	18412702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007744, intron 1 of 4)	intron (NM_007744, intron 1 of 4)	1292.0	NM_001111063	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99107058-4	chr10	99106572	99107572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027740)	promoter-TSS (NM_027740)	-10.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70212807-4	chr14	70212302	70213302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5131.0	NM_011366	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87658222-4	chr1	87657747	87658747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	37935.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120540035-4	chr2	120539535	120540535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011743, intron 3 of 21)	intron (NM_011743, intron 3 of 21)	23824.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	9.5	25.5	26.5	26.0	46.5	19.0
Merged-chr11-75140650-2	chr11	75140150	75141150	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 14 of 18)	intron (NM_001002764, intron 14 of 18)	27502.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	3.5	14.5	12.0	9.5	17.5	18.5
Merged-chr15-99252095-4	chr15	99251594	99252594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016766)	promoter-TSS (NM_016766)	-133.0	NM_016766	51812.0	Mm.383472	NM_016766	ENSMUSG00000037570	Mcrs1	C78274|ICP22BP|MSP58|P78	microspherule protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51925776-4	chr11	51925274	51926274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41857.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91849083-4	chr16	91848594	91849594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 20 of 28)	intron (NM_001110275, intron 20 of 28)	82536.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-126901324-4	chr10	126900816	126901816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026858)	promoter-TSS (NM_026858)	55.0	NM_026858	68876.0	Mm.276769	NM_026858	ENSMUSG00000025436	Atp23	1110068E08Rik|2410012H02Rik|Xrcc6bp1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32608756-4	chr2	32608251	32609251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289549, intron 2 of 6)	intron (NM_001289549, intron 2 of 6)	1766.0	NR_110347	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70989187-2	chr17	70988687	70989687	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023402, intron 1 of 3)	intron (NM_023402, intron 1 of 3)	1329.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142881103-4	chr3	142880604	142881604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178654, intron 1 of 21)	intron (NM_178654, intron 1 of 21)	900.0	NM_178654	109333.0	Mm.244236	NM_178654	ENSMUSG00000004591	Pkn2	6030436C20Rik|AI507382|PRK2|Prkcl2|Stk7	protein kinase N2	protein-coding	2.5	3.0	3.5	3.5	4.5	4.5
Merged-chr14-23825093-4	chr14	23824580	23825580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253364, intron 1 of 27)	intron (NM_001253364, intron 1 of 27)	179125.0	NM_001253375	16531.0	Mm.343607	NM_010610	ENSMUSG00000063142	Kcnma1	5730414M22Rik|BKCa|MaxiK|Slo|Slo1|mSlo|mSlo1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-29948320-4	chr5	29947840	29948840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64774.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38296726-4	chr18	38296296	38297296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164621)	promoter-TSS (NM_001164621)	-9.0	NM_001361268	56736.0	Mm.228903	NM_020012	ENSMUSG00000060450	Rnf14	2310075C09Rik|2610005D23Rik|AA986456|AU041447|D18Ertd188e|D7Bwg0165e|Triad2	ring finger protein 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129624454-4	chr4	129623934	129624934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025455)	promoter-TSS (NM_025455)	-526.0	NM_025455	66264.0	Mm.383215	NM_025455	ENSMUSG00000028795	Ccdc28b	1110002E08Rik|1810010N17Rik	coiled coil domain containing 28B	protein-coding	76.5	182.0	150.0	51.0	200.5	111.0
Merged-chr11-31898758-4	chr11	31898266	31899266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290678, intron 2 of 7)	URR1A|DNA|hAT-Charlie	27826.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	6.5	17.5	10.0	15.0	17.0	16.0
Merged-chr17-25274161-5	chr17	25273644	25274644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027452)	promoter-TSS (NR_027452)	20.0	NR_027452	100272221.0	Mm.478766	NR_027452		Gm17801	-	predicted gene, 17801	ncRNA	83.0	136.0	119.5	95.5	114.5	124.5
Merged-chr5-32139042-4	chr5	32138526	32139526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008037, intron 1 of 3)	intron (NM_008037, intron 1 of 3)	2554.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125333661-4	chr6	125333175	125334175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011324, intron 3 of 11)	intron (NM_011324, intron 3 of 11)	12335.0	NM_011324	20276.0	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-10253241-4	chr13	10252757	10253757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 1 of 4)	intron (NM_033269, intron 1 of 4)	107546.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79704919-2	chr11	79704419	79705419	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7050.0	NR_029579	387188.0		NR_029579	ENSMUSG00000065395	Mir193a	Mir193|Mirn193|mir-193a|mmu-mir-193|mmu-mir-193a	microRNA 193a	ncRNA	44.5	166.0	113.5	46.5	137.5	92.0
Merged-chr11-74505431-6	chr11	74504900	74505900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	MER2|DNA|TcMar-Tigger	84758.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42276785-4	chr10	42276288	42277288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019740)	promoter-TSS (NM_019740)	-46.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161875907-4	chr1	161875398	161876398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151684, intron 1 of 24)	intron (NR_151684, intron 1 of 24)	784.0	NM_172645	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	55.0	133.5	84.5	31.5	146.0	73.0
Merged-chr15-79546696-4	chr15	79546212	79547212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199080)	promoter-TSS (NM_199080)	29.0	NM_001040187	67040.0	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139379193-4	chr5	139378692	139379692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033147, exon 1 of 1)	non-coding (NR_033147, exon 1 of 1)	-1447.0	NM_030258	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-42938928-4	chr17	42938441	42939441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62517.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	27.0	41.5	25.0	27.5	40.0	29.5
Merged-chr10-77418341-4	chr10	77417843	77418843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027377)	promoter-TSS (NR_027377)	-33.0	NR_027377	100045653.0	Mm.363175	NR_027377		Gm17769	-	predicted gene, 17769	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-147013438-4	chr2	147012885	147013885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356402, intron 1 of 28)	CpG	386.0	NM_001356402	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	293.5	683.5	542.0	296.5	495.5	520.0
Merged-chr6-97417110-4	chr6	97416615	97417615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 4 of 23)	intron (NM_145148, intron 4 of 23)	42171.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180921004-4	chr2	180920505	180921505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173761)	promoter-TSS (NM_173761)	-69.0	NM_173761	228994.0	Mm.30205	NM_173761	ENSMUSG00000038848	Ythdf1	2210410K23Rik|8030473O16	YTH domain family 1	protein-coding	39.0	109.0	96.5	70.5	162.5	107.5
Merged-chr3-139075471-4	chr3	139074950	139075950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040690)	promoter-TSS (NM_001040690)	-249.0	NM_001356388	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	20.5	23.0	25.5	27.0	49.5	31.0
Merged-chr5-65107966-3	chr5	65107476	65108476	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347355, intron 1 of 10)	CpG	408.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-110357182-4	chr13	110356676	110357676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177713)	promoter-TSS (NM_177713)	-4.0	NM_177713	238875.0	Mm.30533	NM_177713	ENSMUSG00000046006	Gapt	9830130M13Rik	Grb2-binding adaptor, transmembrane	protein-coding	8.0	15.5	10.5	20.0	10.5	19.5
Merged-chr16-38092836-2	chr16	38092336	38093336	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 1 of 11)	intron (NM_001347232, intron 1 of 11)	-3576.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	1.0	4.5	13.5	0.5	1.0	3.0
Merged-chr3-131892172-3	chr3	131891671	131892671	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-193121.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	1.0	3.0	12.5	0.0	0.0	1.5
Merged-chr4-58546273-4	chr4	58545793	58546793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010336, intron 1 of 3)	intron (NM_010336, intron 1 of 3)	7000.0	NM_172989	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	2.0	9.5	6.0	0.5	8.0	7.0
Merged-chr6-124968076-2	chr6	124967576	124968576	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2538.0	NM_001164089	26894.0	Mm.244536	NM_012003	ENSMUSG00000030127	Cops7a	D6Ertd35e|SGN7a	COP9 signalosome subunit 7A	protein-coding	8.0	6.0	2.0	8.0	5.0	4.0
Merged-chr10-39421005-4	chr10	39420505	39421505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	51206.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38631744-4	chr18	38631242	38632242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30474.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	0.0	0.0	0.0	2.0	0.0	1.5
Merged-chr9-22070886-4	chr9	22070361	22071361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040406)	promoter-TSS (NR_040406)	-141.0	NR_040406	100503652.0	Mm.439941	NR_040406	ENSMUSG00000096981	Gm16845	-	predicted gene, 16845	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-89570699-4	chr1	89570227	89571227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	113165.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66189037-4	chr14	66188537	66189537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 4 of 30)	intron (NM_001162366, intron 4 of 30)	24787.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19632625-2	chr7	19632125	19633125	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019649, exon 14 of 14)	3' UTR (NM_019649, exon 14 of 14)	-3187.0	NM_009046	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83550536-4	chr11	83550047	83551047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEa|LINE|L1	-20029.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-24436711-4	chr18	24436194	24437194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-7524.0	NR_029573	387182.0		NR_029573	ENSMUSG00000065532	Mir187	Mirn187|mir-187|mmu-mir-187	microRNA 187	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81132899-4	chr13	81132388	81133388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	168814.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100820911-4	chr5	100820418	100821418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172405)	promoter-TSS (NM_172405)	17.0	NM_172405	70681.0	Mm.486560	NM_172405	ENSMUSG00000035234	Abraxas1	3830405G04Rik|5630400M01Rik|AI506069|AL024423|AV118690|Ccdc98|Fam175a	BRCA1 A complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-94592258-7	chr15	94591778	94592778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2454.0	NM_008971	19230.0	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47768866-4	chr17	47768367	47769367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-16877.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	39.5	102.0	82.0	54.5	85.0	65.0
Merged-chr17-71667500-2	chr17	71667000	71668000	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5761.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32182032-4	chr19	32181526	32182526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	28987.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128089346-4	chr7	128088838	128089838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008401, intron 12 of 29)	L1M2|LINE|L1	26698.0	NM_008401	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184622708-4	chr1	184622205	184623205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65014.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99967776-2	chr12	99967276	99968276	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	3277.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-39011466-4	chr2	39010955	39011955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028809, intron 1 of 3)	intron (NM_028809, intron 1 of 3)	3316.0	NM_028809	74192.0	Mm.38155	NM_028809	ENSMUSG00000026755	Arpc5l	2010015J01Rik|AI852867|ARC16-2|AW555592|AW742746	actin related protein 2/3 complex, subunit 5-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-21129057-4	chr3	21128548	21129548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-761871.0	NM_175086	11608.0	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108065330-4	chr6	108064823	108065823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178391, intron 1 of 1)	intron (NM_178391, intron 1 of 1)	278.0	NM_178391	74729.0	Mm.56539	NM_178391	ENSMUSG00000034639	Setmar	5830404F24Rik|Etet2	SET domain without mariner transposase fusion	protein-coding	29.5	98.5	73.0	20.5	63.0	69.5
Merged-chr7-43608490-2	chr7	43607990	43608990	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355131, intron 1 of 3)	intron (NM_001355131, intron 1 of 3)	1321.0	NM_028913	74400.0	Mm.159188	NM_028913	ENSMUSG00000055102	Zfp819	4930427I11Rik|4933405K07Rik	zinc finger protein 819	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21339498-4	chr16	21338996	21339996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6140.0	NR_131983	76222.0	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	0.0	2.5	2.5	0.0	7.5	0.0
Merged-chr7-110963606-2	chr7	110963106	110964106	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194464, intron 1 of 20)	intron (NM_194464, intron 1 of 20)	-17419.0	NM_010826	17540.0	Mm.250023	NM_010826	ENSMUSG00000005611	Mrvi1	BB115629|Irag|Ris1	MRV integration site 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-112002759-4	chr10	112002266	112003266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5502.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99468656-8	chr7	99468102	99469102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028145, exon 2 of 7)	exon (NM_028145, exon 2 of 7)	2598.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	41.5	93.5	53.5	33.0	82.0	66.5
Merged-chr12-85110819-4	chr12	85110283	85111283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030225)	promoter-TSS (NM_030225)	-50.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120492752-4	chr11	120492267	120493267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013770, intron 1 of 10)	intron (NM_013770, intron 1 of 10)	930.0	NM_013770	27376.0	Mm.3991	NM_013770	ENSMUSG00000025792	Slc25a10	Dic	solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	protein-coding	12.0	68.5	49.0	11.5	74.0	50.5
Merged-chr16-32190371-4	chr16	32189889	32190889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	10589.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-24174188-3	chr19	24173718	24174718	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198985)	promoter-TSS (NM_001198985)	-29.0	NM_001198985	21873.0	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	4.5	0.0	1.5	0.0	0.0	1.5
Merged-chr4-141872992-4	chr4	141872410	141873410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	2010.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	44.5	134.5	105.0	31.0	140.0	69.5
Merged-chr3-51483996-4	chr3	51483497	51484497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016858)	promoter-TSS (NM_016858)	31.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167348688-6	chr2	167348141	167349141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	537.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163658485-4	chr2	163658006	163659006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164053)	promoter-TSS (NM_001164053)	48.0	NM_001164053	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170325425-4	chr2	170324929	170325929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30932.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120275633-4	chr14	120275134	120276134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207515)	promoter-TSS (NM_207515)	-35.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	15.5	49.5	26.5	28.5	59.5	58.5
Merged-chr1-53823945-4	chr1	53823454	53824454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 28 of 28)	intron (NM_001001883, intron 28 of 28)	-25470.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-72104237-4	chr1	72103743	72104743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99048.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50698283-3	chr15	50697789	50698789	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	190760.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	6.5	1.5	1.5	13.5	6.5	9.5
Merged-chr18-10725545-4	chr18	10725036	10726036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144860)	promoter-TSS (NM_144860)	-89.0	NM_144860	225164.0	Mm.21500	NM_144860	ENSMUSG00000024294	Mib1	DIP-1|E430019M12Rik|Mib|mKIAA1323	mindbomb E3 ubiquitin protein ligase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21372674-4	chr5	21372176	21373176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008013)	promoter-TSS (NM_008013)	3.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-98091770-4	chr6	98091272	98092272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99989.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22297157-4	chr16	22296659	22297659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2171.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86525483-2	chr6	86524982	86525982	+	1000.0	f0_balb.idr|f0_c57.idr	exon (NM_011865, exon 1 of 1)	exon (NM_011865, exon 1 of 1)	707.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	2.0	8.5	3.5	2.0	8.0	6.0
Merged-chr11-83663742-4	chr11	83663229	83664229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013652, intron 2 of 2)	intron (NM_013652, intron 2 of 2)	1145.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34196264-1	chr7	34195764	34196764	+	1000.0	f0_balb.idr	intron (NM_026549, intron 2 of 6)	CpG	406.0	NM_026549	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6297828-4	chr19	6297315	6298315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 4 of 4)	intron (NM_010119, intron 4 of 4)	-8642.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95964668-2	chr16	95964168	95965168	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26292.0	NM_019537	56088.0	Mm.396248	NM_019537	ENSMUSG00000022913	Psmg1	AW552102|Dscr2	proteasome (prosome, macropain) assembly chaperone 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45515663-4	chr7	45515149	45516149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045555, intron 4 of 13)	intron (NM_001045555, intron 4 of 13)	1047.0	NM_001290998	56734.0	Mm.439742	NM_008807	ENSMUSG00000023467	Tulp2	Pdet	tubby-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-64956865-2	chr14	64956365	64957365	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253731, intron 1 of 16)	intron (NM_001253731, intron 1 of 16)	6820.0	NM_001253731	210925.0	Mm.71332	NM_153414	ENSMUSG00000021975	Ints9	BC028953|D14Ertd231e	integrator complex subunit 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106059423-4	chr8	106058904	106059904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010901)	promoter-TSS (NM_010901)	-199.0	NM_010901	18021.0	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6046495-4	chr19	6045991	6046991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028769)	promoter-TSS (NM_028769)	-85.0	NM_028769	74126.0	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	66.5	239.5	146.0	75.0	208.5	154.5
Merged-chr2-33131126-6	chr2	33130626	33131626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355200)	promoter-TSS (NM_001355200)	310.0	NM_001355201	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132007523-4	chr1	132007028	132008028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007923)	promoter-TSS (NM_007923)	-77.0	NM_007923	13714.0	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-35838551-4	chr11	35838028	35839028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_170779)	TTS (NM_170779)	-4000.0	NM_025936	104458.0	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24577985-4	chr16	24577497	24578497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 4 of 12)	intron (NM_178665, intron 4 of 12)	48683.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43354581-4	chr5	43354154	43355154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119300.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	0.5	9.5	16.0	1.0	8.5	5.5
Merged-chr2-31076547-4	chr2	31076056	31077056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	B3A|SINE|B2	19944.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3420328-4	chr5	3419810	3420810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 3 of 7)	intron (NM_009873, intron 3 of 7)	76417.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124025316-4	chr5	124024841	124025841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	6919.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	13.0	31.0	11.0	7.0	54.0	32.0
Merged-chr11-69070796-4	chr11	69070268	69071268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025838)	promoter-TSS (NM_025838)	-41.0	NM_025838	66910.0	Mm.33964	NM_025838	ENSMUSG00000020895	Tmem107	1110004B13Rik|2810049P21Rik	transmembrane protein 107	protein-coding	10.5	42.0	8.0	17.5	26.5	22.5
Merged-chr11-70021596-4	chr11	70021106	70022106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007864, intron 1 of 19)	CpG	3001.0	NM_007864	13385.0	Mm.27256	NM_007864	ENSMUSG00000020886	Dlg4	Dlgh4|PSD-95|PSD95|SAP90|SAP90A	discs large MAGUK scaffold protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-16073526-4	chr16	16073019	16074019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 5 of 18)	intron (NM_001355731, intron 5 of 18)	73332.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-52302397-4	chr12	52301884	52302884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029760, intron 8 of 10)	intron (NM_029760, intron 8 of 10)	178225.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	1.0	0.0	3.0	0.0	1.0	4.0
Merged-chr5-21035883-4	chr5	21035384	21036384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356590)	promoter-TSS (NM_001356590)	-637.0	NM_001356590	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67951012-4	chr7	67950517	67951517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1240.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60738649-4	chr13	60738141	60739141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 18 of 26)	intron (NM_134062, intron 18 of 26)	47723.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	41.0	120.5	80.0	54.0	132.0	65.0
Merged-chr19-11336161-4	chr19	11335708	11336708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025610)	promoter-TSS (NM_001025610)	-62.0	NM_027836	109225.0	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86182786-4	chr15	86182282	86183282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-2946.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35234899-4	chr7	35234405	35235405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19560.0	NM_001024707	435965.0	Mm.333783	NM_001024707	ENSMUSG00000001802	Lrp3	-	low density lipoprotein receptor-related protein 3	protein-coding	39.5	151.5	135.0	68.5	134.0	112.0
Merged-chr2-91054045-4	chr2	91053587	91054587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008948)	promoter-TSS (NM_008948)	71.0	NM_008948	19182.0	Mm.289832	NM_008948	ENSMUSG00000002102	Psmc3	TBP-1	proteasome (prosome, macropain) 26S subunit, ATPase 3	protein-coding	34.5	77.0	64.0	30.5	80.5	68.5
Merged-chr7-84611761-4	chr7	84611243	84612243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5801.0	NM_010176	14085.0	Mm.3798	NM_010176	ENSMUSG00000030630	Fah	swst	fumarylacetoacetate hydrolase	protein-coding	7.5	9.5	13.5	1.5	19.5	11.5
Merged-chr10-94576484-2	chr10	94575984	94576984	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177026, intron 1 of 3)	intron (NM_177026, intron 1 of 3)	221.0	NM_177026	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-13004844-2	chr18	13004344	13005344	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-2146.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52012142-3	chr6	52011631	52012631	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018773, intron 1 of 12)	intron (NM_018773, intron 1 of 12)	418.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129633484-4	chr2	129632982	129633982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	38020.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	129.5	257.0	159.0	132.0	241.0	192.0
Merged-chr1-124072797-2	chr1	124072297	124073297	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27238.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	30.0	46.5	50.0	30.0	48.5	52.5
Merged-chr19-55227891-4	chr19	55227411	55228411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 7 of 20)	intron (NM_001081076, intron 7 of 20)	13325.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-41760229-1	chr15	41759729	41760729	+	1000.0	f0_balb.idr	intron (NR_152565, intron 3 of 17)	Lx4A|LINE|L1	-28766.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-4456616-3	chr10	4456123	4457123	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	24018.0	NM_024261	73419.0	Mm.346733	NM_024261	ENSMUSG00000061759	Armt1	1700052N19Rik|AW320013|AW536799	acidic residue methyltransferase 1	protein-coding	0.0	4.0	0.0	0.0	0.5	1.0
Merged-chr5-137779245-2	chr5	137778745	137779745	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027242, intron 1 of 3)	CpG	341.0	NM_027242	69871.0	Mm.276058	NM_027242	ENSMUSG00000029725	Ppp1r35	2010007H12Rik|2010011D20Rik|AL024004	protein phosphatase 1, regulatory subunit 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31930626-4	chr14	31930145	31931145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G1|LTR|ERVL-MaLR	-98458.0	NM_030166	78754.0	Mm.40681	NM_030166	ENSMUSG00000021903	Galnt15	4631401E18Rik|Galntl2|mpp-GalNAc-T15	polypeptide N-acetylgalactosaminyltransferase 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133277729-4	chr4	133277248	133278248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110978)	promoter-TSS (NR_110978)	42.0	NM_025667	52174.0	Mm.244748	NM_025667	ENSMUSG00000028857	Tmem222	5730406H10Rik|AA409341|D4Ertd196e	transmembrane protein 222	protein-coding	76.0	201.0	132.5	111.0	237.5	204.0
Merged-chr4-88760662-3	chr4	88760153	88761153	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085531)	promoter-TSS (NM_001085531)	-121.0	NM_001085531	545645.0	Mm.489553	NM_001085531	ENSMUSG00000100505	Gm13283	EG545645	predicted gene 13283	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-63382811-4	chr10	63382236	63383236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253685, intron 1 of 4)	intron (NM_001253685, intron 1 of 4)	293.0	NM_001253685	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-6363229-1	chr7	6362729	6363729	+	1000.0	f0_c57.idr	promoter-TSS (NM_001025163)	promoter-TSS (NM_001025163)	-79.0	NM_001025163	330463.0	Mm.136456	NM_177888	ENSMUSG00000055150	Zfp78	A330079D15|KRAB12|Zfp77	zinc finger protein 78	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120990537-4	chr11	120990067	120991067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027874, intron 1 of 9)	C-rich|Low_complexity|Low_complexity	766.0	NM_139059	104318.0	Mm.216227	NM_027874	ENSMUSG00000025162	Csnk1d	1200006A05Rik|AA409348|D930010H05Rik	casein kinase 1, delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144009246-4	chr2	144008740	144009740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	2023.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34837071-4	chr17	34836572	34837572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163770)	promoter-TSS (NM_001163770)	53.0	NM_001163770	112403.0	Mm.275309	NM_033613	ENSMUSG00000040482	Dxo	Dom3z|NG6	decapping exoribonuclease	protein-coding	104.5	215.5	139.0	82.5	189.5	170.5
Merged-chr7-66140342-4	chr7	66139861	66140861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081163, intron 2 of 2)	L1MC3|LINE|L1	30846.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122425159-2	chr8	122424659	122425659	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301284, intron 4 of 4)	B2_Mm2|SINE|B2	3139.0	NM_145834	234836.0	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	0.0	1.0	2.0	0.0	1.5	1.0
Merged-chr8-120319638-4	chr8	120319157	120320157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91427.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-85128063-2	chr10	85127563	85128563	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028832)	promoter-TSS (NM_028832)	-36.0	NM_028832	74238.0	Mm.255401	NM_028832	ENSMUSG00000049038	Mterf2	1700007D05Rik|Mterfd3	mitochondrial transcription termination factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60046447-4	chr11	60045936	60046936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290012)	promoter-TSS (NM_001290012)	53.0	NM_001290012	18618.0	Mm.2731	NM_008819	ENSMUSG00000000301	Pemt	PEAMT|PEMT2|PLMT|Pempt|Pempt2	phosphatidylethanolamine N-methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-127109607-4	chr6	127109093	127110093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177003)	promoter-TSS (NM_177003)	-41.0	NM_177003	319801.0	Mm.101836	NM_177003	ENSMUSG00000038028	Tigar	9630033F20Rik|AA793651|AI595337|C79710|C85509	Trp53 induced glycolysis repulatory phosphatase	protein-coding	0.0	3.5	0.5	1.5	5.5	3.5
Merged-chr1-53352739-4	chr1	53352236	53353236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001353501)	promoter-TSS (NM_001353501)	16.0	NM_001290984	70396.0	Mm.285783	NM_133728	ENSMUSG00000026095	Asnsd1	2210409M21Rik	asparagine synthetase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-19004975-4	chr2	19004469	19005469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6650.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136206280-4	chr4	136205796	136206796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355698)	promoter-TSS (NM_001355698)	-69.0	NM_001008232	230837.0	Mm.77788	NM_001008232	ENSMUSG00000036995	Asap3	9430088F20Rik|Ddefl1|Gm140|UPLC1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14239748-4	chr2	14239323	14240323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 2 of 29)	ID_B1|SINE|B4	10409.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84990013-4	chr8	84989502	84990502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167991)	promoter-TSS (NM_001167991)	-593.0	NM_133255	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	35.0	214.5	127.0	65.5	213.5	109.0
Merged-chr11-77607965-4	chr11	77607465	77608465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144825)	promoter-TSS (NM_144825)	-150.0	NM_144825	216965.0	Mm.340436	NM_144825	ENSMUSG00000017291	Taok1	2810468K05Rik|AU020252|D130018F14Rik|Map3k16|Markk|Psk2|mKIAA1361	TAO kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-140175673-4	chr1	140175185	140176185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009888, intron 1 of 21)	intron (NM_009888, intron 1 of 21)	7726.0	NM_009888	12628.0	Mm.8655	NM_009888	ENSMUSG00000026365	Cfh	Mud-1|NOM|Sas-1|Sas1	complement component factor h	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57796068-4	chr6	57795558	57796558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 1 of 4)	intron (NM_146168, intron 1 of 4)	29067.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134127781-1	chr4	134127281	134128281	+	1000.0	f1_c57bl6.idr	exon (NM_080559, exon 3 of 3)	exon (NM_080559, exon 3 of 3)	972.0	NM_080559	73723.0	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	0.0	5.0	1.0	4.0	0.0	2.5
Merged-chr2-166204366-4	chr2	166203883	166204883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48700.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35980364-1	chr17	35979864	35980864	+	1000.0	f0_balb.idr	promoter-TSS (NM_001165892)	promoter-TSS (NM_001165892)	409.0	NM_008136	14670.0	Mm.335754	NM_008136	ENSMUSG00000024429	Gnl1	Gna-rs1|Gnal1	guanine nucleotide binding protein-like 1	protein-coding	40.0	95.5	88.5	35.5	101.5	83.5
Merged-chr5-114771701-2	chr5	114771201	114772201	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077359, intron 1 of 18)	intron (NM_001077359, intron 1 of 18)	1790.0	NM_019834	26431.0	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84334027-4	chr3	84333557	84334557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-29282.0	NM_001271726	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-23114649-4	chr19	23114150	23115150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26576.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-67049411-2	chr9	67048911	67049911	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164249)	promoter-TSS (NM_001164249)	-198.0	NM_001164251	22003.0	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|TPM1kappa|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-143916710-4	chr1	143916207	143917207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87442.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59823712-4	chr4	59823210	59824210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	intron (NM_172468, intron 1 of 8)	18060.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7017832-4	chr19	7017296	7018296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362399, intron 2 of 14)	intron (NM_001362399, intron 2 of 14)	1673.0	NM_153795	108101.0	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49855477-4	chr16	49854985	49855985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010581)	promoter-TSS (NM_010581)	-169.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94246150-4	chr16	94245638	94246638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 5 of 10)	ORR1D2|LTR|ERVL-MaLR	44153.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68239241-1	chr10	68238741	68239741	+	1000.0	f0_balb.idr	intron (NM_023598, intron 3 of 9)	intron (NM_023598, intron 3 of 9)	39485.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	215.0	513.5	408.5	185.0	463.0	288.0
Merged-chr4-149621585-2	chr4	149621077	149622077	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290989, intron 2 of 17)	intron (NM_001290989, intron 2 of 17)	33990.0	NR_105990	102465983.0		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	6.0	0.5	0.0	0.0	0.0	0.0
Merged-chr13-111809530-8	chr13	111809013	111810013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011945)	promoter-TSS (NM_011945)	-520.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	29.5	72.0	79.0	17.0	29.5	38.5
Merged-chr19-9936748-4	chr19	9936239	9937239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37206.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	30.0	60.5	39.5	24.0	50.0	67.5
Merged-chr16-33591898-4	chr16	33591409	33592409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 5 of 11)	intron (NM_001083902, intron 5 of 11)	73314.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	3.5	11.0	6.5	3.5	11.0	6.5
Merged-chr5-149006885-4	chr5	149006394	149007394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040429)	promoter-TSS (NR_040429)	-68.0	NR_040429	100503307.0	Mm.188008	NR_040429	ENSMUSG00000086610	Gm15408	-	predicted gene 15408	ncRNA	19.0	34.5	22.5	13.0	25.5	30.0
Merged-chr6-124829099-4	chr6	124828618	124829618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013700, intron 1 of 19)	intron (NM_013700, intron 1 of 19)	366.0	NM_001326594	22225.0	Mm.3571	NM_013700	ENSMUSG00000038429	Usp5	AA407472|ISOT|ISOT-1|Ucht	ubiquitin specific peptidase 5 (isopeptidase T)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75504958-4	chr10	75504441	75505441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HERVL40-int|LTR|ERVL	12440.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57335872-4	chr17	57335382	57336382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22804.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47505056-4	chr17	47504480	47505480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081636)	promoter-TSS (NM_001081636)	-71.0	NM_001081636	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152782225-4	chr3	152781732	152782732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025662, intron 10 of 10)	intron (NM_025662, intron 10 of 10)	68132.0	NM_025662	329777.0	Mm.331447	NM_025662	ENSMUSG00000039047	Pigk	3000001O05Rik|Gm38470|PIG-K	phosphatidylinositol glycan anchor biosynthesis, class K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126776883-4	chr7	126776385	126777385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026875)	promoter-TSS (NM_026875)	-90.0	NM_026875	66090.0	Mm.27114	NM_025347	ENSMUSG00000042675	Ypel3	0610043B10Rik|1190001G19Rik|Suap	yippee like 3	protein-coding	0.0	1.5	0.0	0.0	1.5	0.0
Merged-chr1-131146510-4	chr1	131146013	131147013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	-6694.0	NM_001136070	16865.0	Mm.276294	NM_010709	ENSMUSG00000026427	Eif2d	D1Ertd5e|Lgtn	eukaryotic translation initiation factor 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88065390-2	chr17	88064889	88065889	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001081034)	promoter-TSS (NM_001081034)	-98.0	NM_001081034	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84738685-2	chr2	84738185	84739185	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001005342)	TTS (NM_001005342)	2493.0	NR_029544	387149.0		NR_029544	ENSMUSG00000065484	Mir130a	Mirn130|Mirn130a|mir-130a	microRNA 130a	ncRNA	0.0	2.0	0.0	0.0	4.0	0.0
Merged-chr8-46851787-4	chr8	46851294	46852294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112049.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80775013-4	chr7	80774513	80775513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	28318.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	161.5	344.5	253.5	194.5	389.0	265.0
Merged-chr3-152912379-4	chr3	152911942	152912942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	69765.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191907655-4	chr1	191907173	191908173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030669)	promoter-TSS (NR_030669)	-146.0	NR_030669	98736.0	Mm.379232	NM_001024489	ENSMUSG00000055833	1700034H15Rik	4930557M11Rik|BB016121	RIKEN cDNA 1700034H15 gene	ncRNA	0.0	1.0	1.5	0.5	14.0	3.5
Merged-chr16-16099957-4	chr16	16099441	16100441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 5 of 18)	intron (NM_001355731, intron 5 of 18)	46910.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112344623-4	chr13	112344111	112345111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001168405)	TTS (NM_001168405)	56093.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	49.0	51.0	65.0	25.0	47.5	36.5
Merged-chr14-40985840-4	chr14	40985337	40986337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCa|LINE|L1	-18941.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-62908045-4	chr14	62907463	62908463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 3 of 11)	intron (NM_175546, intron 3 of 11)	42421.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181837886-4	chr2	181837370	181838370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153594)	promoter-TSS (NM_153594)	16.0	NM_001291211	245867.0	Mm.491085	NM_153594	ENSMUSG00000027589	Pcmtd2	5330414D10Rik|AI314201	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10321284-4	chr17	10320784	10321784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_037588)	TTS (NR_037588)	1365.0	NR_037588	100526796.0	Mm.384135	NR_037588		Cahm	B930003M22Rik	colon adenocarcinoma hypermethylated RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-3463176-4	chr6	3462668	3463668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178899, intron 9 of 9)	intron (NM_178899, intron 9 of 9)	31330.0	NM_178899	101202.0	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-58321511-4	chr14	58321003	58322003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	248817.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46595799-4	chr8	46595297	46596297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001184, intron 6 of 14)	intron (NM_001001184, intron 6 of 14)	21430.0	NM_001001184	408022.0	Mm.217385	NM_001001184	ENSMUSG00000038225	Primpol	BC065112|Ccdc111	primase and polymerase (DNA-directed)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46497773-4	chr8	46497265	46498265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302163, intron 2 of 20)	intron (NM_001302163, intron 2 of 20)	6799.0	NM_001302163	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79229246-4	chr15	79228752	79229752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008837)	promoter-TSS (NM_008837)	79.0	NM_008837	18693.0	Mm.259464	NM_008837	ENSMUSG00000068206	Pick1	Prkcabp	protein interacting with C kinase 1	protein-coding	6.0	32.5	16.0	3.5	36.0	24.5
Merged-chr7-44553082-2	chr7	44552582	44553582	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009473, intron 2 of 9)	intron (NM_009473, intron 2 of 9)	883.0	NM_009473	22260.0	Mm.968	NM_009473	ENSMUSG00000060601	Nr1h2	AI194859|LXR|LXRB|LXRBSV|LXRbeta|NER1|OR-1|RIP15|UR|Unr|Unr2	nuclear receptor subfamily 1, group H, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47521752-4	chr17	47521273	47522273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	16722.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132509795-4	chr4	132509253	132510253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144907, intron 1 of 9)	intron (NM_144907, intron 1 of 9)	703.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-72133331-4	chr9	72132831	72133831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-21512.0	NM_011544	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0.0	3.0	0.5	4.0	0.0	0.5
Merged-chr17-88552149-4	chr17	88551678	88552678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028658, intron 7 of 21)	intron (NM_028658, intron 7 of 21)	22054.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	80.5	165.5	124.0	46.0	166.5	112.5
Merged-chr7-12913777-2	chr7	12913277	12914277	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-8534.0	NM_009095	20103.0	Mm.5291	NM_009095	ENSMUSG00000012848	Rps5	AA617411	ribosomal protein S5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99575856-4	chr9	99575378	99576378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031403)	promoter-TSS (NM_031403)	79.0	NM_031403	83703.0	Mm.31324	NM_031403	ENSMUSG00000032469	Dbr1	AW018415	debranching RNA lariats 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-131642987-5	chr3	131642459	131643459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289479, intron 13 of 13)	intron (NM_001289479, intron 13 of 13)	76927.0	NM_001289477	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-87943176-4	chr4	87942681	87943681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027326, intron 2 of 10)	intron (NM_027326, intron 2 of 10)	90226.0	NM_027326	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120058840-4	chr9	120058341	120059341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009987, intron 1 of 1)	intron (NM_009987, intron 1 of 1)	9455.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124026088-2	chr5	124025588	124026588	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	6172.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	1.5	8.5	5.0	8.0	15.5	6.0
Merged-chr5-114916939-4	chr5	114916450	114917450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6290.0	NM_001359946	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	6.0	13.0	6.5	4.0	10.0	3.0
Merged-chr2-18057863-4	chr2	18057357	18058357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106115)	promoter-TSS (NR_106115)	11.0	NR_106115	102466840.0		NR_106115	ENSMUSG00000099050	Mir7655	Gm27794|mmu-mir-7655	microRNA 7655	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-7169976-4	chr17	7169472	7170472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011299)	promoter-TSS (NM_011299)	-143.0	NM_011299	20112.0	Mm.268383	NM_011299	ENSMUSG00000023809	Rps6ka2	90kDa|D17Wsu134e|Rps6ka-rs1|Rsk3|p90rsk|pp90rsk	ribosomal protein S6 kinase, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108792333-4	chr12	108791835	108792835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009537)	promoter-TSS (NM_009537)	-976.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95931712-4	chr16	95931213	95932213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2636.0	NR_040484	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86668777-4	chr4	86668273	86669273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007408, intron 1 of 7)	intron (NM_007408, intron 1 of 7)	1286.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	1.0	23.0	9.0	5.5	15.5	12.5
Merged-chr13-49309267-4	chr13	49308772	49309772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015759)	promoter-TSS (NM_015759)	-64.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-51077190-4	chr9	51076736	51077736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033534)	promoter-TSS (NM_001033534)	-142.0	NM_001033534	244864.0	Mm.335152	NM_001033534	ENSMUSG00000060594	Layn	E030012M19Rik|Gm511	layilin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-21417719-4	chr12	21417203	21418203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011739)	promoter-TSS (NM_011739)	-267.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	34.0	79.5	83.0	25.5	77.0	33.5
Merged-chr1-166380144-4	chr1	166379644	166380644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030245, intron 1 of 7)	intron (NM_030245, intron 1 of 7)	977.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17210199-4	chr16	17209698	17210698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033338, exon 1 of 1)	exon (NM_001033338, exon 1 of 1)	2063.0	NM_001033338	239731.0	Mm.86671	NM_001033338	ENSMUSG00000071636	Rimbp3	Gm1759|Gm603|RIM-BP3|mKIAA1666	RIMS binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145307461-4	chr6	145306963	145307963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	56911.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	186.5	484.5	450.5	252.0	533.0	326.0
Merged-chr10-58351892-4	chr10	58351407	58352407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359116)	promoter-TSS (NM_001359116)	-56.0	NM_001359116	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-51500393-4	chr1	51499899	51500899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22000.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88751936-2	chr15	88751455	88752455	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_181412, intron 1 of 2)	CpG	244.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28598260-4	chr7	28597757	28598757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027470)	promoter-TSS (NM_027470)	-73.0	NM_027470	70584.0	Mm.21876	NM_027470	ENSMUSG00000030602	Pak4	5730488L07Rik|AW555722|mKIAA1142	p21 (RAC1) activated kinase 4	protein-coding	1.0	12.0	7.5	9.0	5.0	8.0
Merged-chr19-53325837-4	chr19	53325371	53326371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	intron (NM_001360348, intron 1 of 5)	-3542.0	NM_010847	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104864460-4	chr3	104863962	104864962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355044)	promoter-TSS (NM_001355044)	43.0	NM_009797	12340.0	Mm.19142	NM_009797	ENSMUSG00000070372	Capza1	CAPZ|CAZ1|Cappa1|capZ alpha-1	capping protein (actin filament) muscle Z-line, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3184306-2	chr11	3183809	3184809	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 4 of 32)	intron (NM_030207, intron 4 of 32)	9154.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38374000-4	chr15	38373474	38374474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73263.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124505225-4	chr6	124504729	124505729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181344, intron 2 of 5)	L3|LINE|CR1	-7392.0	NM_023143	50909.0	Mm.333375	NM_023143	ENSMUSG00000055172	C1ra	AI132558|C1r|mC1rA	complement component 1, r subcomponent A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-102684896-4	chr13	102684382	102685382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8665.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-109523839-2	chr7	109523339	109524339	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_037617)	TTS (NR_037617)	3707.0	NR_028079	100302499.0	Mm.482651	NR_028079	ENSMUSG00000065016	Snora3	MBI-28	small nucleolar RNA, H/ACA box 3	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129315997-4	chr2	129315497	129316497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6025.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86229591-4	chr1	86229113	86230113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027456, intron 19 of 20)	intron (NM_027456, intron 19 of 20)	-73608.0	NM_145222	227327.0	Mm.86467	NM_145222	ENSMUSG00000079445	B3gnt7	C330001H22Rik|beta-3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128797658-2	chr2	128797158	128798158	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 18 of 18)	intron (NM_008587, intron 18 of 18)	-20645.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34108125-1	chr8	34107625	34108625	+	1000.0	f1_balb.idr	promoter-TSS (NM_001293758)	promoter-TSS (NM_001293758)	-311.0	NM_001293758	22428.0	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	24.0	67.0	50.5	22.0	43.0	40.0
Merged-chr12-44209280-1	chr12	44208780	44209780	+	1000.0	f0_balb.idr	intron (NM_013760, intron 1 of 2)	intron (NM_013760, intron 1 of 2)	788.0	NM_013760	27362.0	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86358982-5	chr1	86358455	86359455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015507)	promoter-TSS (NR_015507)	500.0	NM_010880	17975.0	Mm.154378	NM_010880	ENSMUSG00000026234	Ncl	B530004O11Rik|C23|D0Nds28|D1Nds28|Nucl	nucleolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59223311-2	chr10	59222811	59223811	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172939, exon 1 of 1)	exon (NM_172939, exon 1 of 1)	1389.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-70811034-4	chr16	70810547	70811547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	194622.0	NR_040474	52645.0	Mm.188475	NR_040474		D16Ertd519e	-	DNA segment, Chr 16, ERATO Doi 519, expressed	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-136948137-4	chr2	136947622	136948622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149746, intron 4 of 8)	intron (NR_149746, intron 4 of 8)	48771.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-62182019-2	chr2	62181519	62182519	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001242381, intron 2 of 25)	Lx5c|LINE|L1	135504.0	NM_033552	94229.0	Mm.314497	NM_033552	ENSMUSG00000026904	Slc4a10	NCBE|mKIAA4136	solute carrier family 4, sodium bicarbonate cotransporter-like, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21501216-4	chr14	21500698	21501698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017479, intron 1 of 16)	CpG	1413.0	NM_017479	54169.0	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	4.5	5.0	5.5	5.0	5.0	5.5
Merged-chr2-31061035-4	chr2	31060536	31061536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	35464.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70904704-4	chr8	70904198	70905198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1276.0	NM_173013	270058.0	Mm.248559	NM_173013	ENSMUSG00000019261	Map1s	6430517J16Rik|Bpy2ip1|Map8|Mtap1s|VCY2IP1	microtubule-associated protein 1S	protein-coding	28.0	71.5	45.5	42.5	55.5	42.0
Merged-chr10-111074093-4	chr10	111073612	111074612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64046.0	NM_172554	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	2.0	3.0	7.0	2.0	5.5	7.5
Merged-chr7-43643319-4	chr7	43642818	43643818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028236, intron 4 of 5)	intron (NM_028236, intron 4 of 5)	8579.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44397625-2	chr9	44397125	44398125	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008063)	promoter-TSS (NM_008063)	530.0	NM_001293630	14385.0	Mm.30087	NM_008063	ENSMUSG00000032114	Slc37a4	100043178|G6PT|G6pt1|GSD-1b|mG6PT	solute carrier family 37 (glucose-6-phosphate transporter), member 4	protein-coding	18.5	78.0	62.0	20.0	56.0	29.5
Merged-chr6-136941358-4	chr6	136940871	136941871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301301, intron 1 of 5)	intron (NM_001301301, intron 1 of 5)	132.0	NM_001301305	11857.0	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	43.0	64.0	87.5	34.0	68.0	60.0
Merged-chr11-101462408-2	chr11	101461954	101462954	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_012037, exon 3 of 6)	exon (NM_012037, exon 3 of 6)	3745.0	NM_012037	26949.0	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	0.0	18.0	5.5	0.0	14.0	8.5
Merged-chr2-122780612-4	chr2	122780108	122781108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027888, intron 1 of 9)	intron (NR_027888, intron 1 of 9)	-1391.0	NM_021507	59010.0	Mm.28986	NM_021507	ENSMUSG00000005803	Sqor	0610039J17Rik|4930557M22Rik|Sqrdl	sulfide quinone oxidoreductase	protein-coding	67.5	233.0	161.5	64.5	127.5	109.5
Merged-chr2-167689051-4	chr2	167688513	167689513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009883)	promoter-TSS (NM_009883)	98.0	NM_001287738	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-145115437-2	chr5	145114937	145115937	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023142, intron 1 of 9)	intron (NM_023142, intron 1 of 9)	1181.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21669046-4	chr10	21668517	21669517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21828.0	NR_045843	432436.0	Mm.244553	NM_001004162	ENSMUSG00000056716	Gm5420	EG432436	predicted gene 5420	ncRNA	0.5	5.5	2.5	0.5	5.5	2.5
Merged-chr19-61266681-4	chr19	61266204	61267204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-38286.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-48872489-4	chr13	48871984	48872984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-1599.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50109011-4	chr11	50108517	50109517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 7 of 7)	intron (NM_001290750, intron 7 of 7)	-22343.0	NM_001290759	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-116633998-4	chr8	116633507	116634507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 1 of 6)	MTD|LTR|ERVL-MaLR	98984.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100665139-4	chr15	100664636	100665636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270537, intron 1 of 10)	intron (NM_001270537, intron 1 of 10)	4364.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	8.0	22.0	9.0	7.0	22.0	8.5
Merged-chr6-65516877-4	chr6	65516372	65517372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73526.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3134486-2	chr11	3133972	3134972	+	1000.0	f0_balb.idr|f1_balb.idr	exon (NM_030207, exon 29 of 33)	exon (NM_030207, exon 29 of 33)	10451.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43864655-4	chr13	43864163	43865163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	79551.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-118429172-2	chr4	118428672	118429672	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039176)	promoter-TSS (NM_001039176)	-529.0	NM_001039176	54325.0	Mm.282096	NM_019422	ENSMUSG00000006390	Elovl1	AA407424|BB151133|Ssc1	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	protein-coding	6.5	10.0	9.5	6.0	9.0	4.5
Merged-chr3-21936096-4	chr3	21935583	21936583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140569.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75778323-4	chr2	75777859	75778859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-53818.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5889678-2	chr13	5889178	5890178	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28189.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-22774379-4	chr2	22773900	22774900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019456)	promoter-TSS (NM_019456)	73.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43915362-4	chr1	43914876	43915876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18618.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123925928-2	chr9	123925442	123926442	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42750.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84181738-4	chr17	84181252	84182252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	6195.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-67128591-4	chr13	67128082	67129082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172392, intron 1 of 3)	intron (NM_172392, intron 1 of 3)	354.0	NM_172392	268670.0	Mm.56274	NM_172392	ENSMUSG00000057396	Zfp759	BC028265|Rslcan-8|Rslcan8	zinc finger protein 759	protein-coding	107.0	234.0	177.5	80.0	165.0	144.0
Merged-chr15-79357713-4	chr15	79357206	79358206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001304830, exon 3 of 3)	exon (NM_001304830, exon 3 of 3)	9304.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	4.5	11.0	9.5	1.5	3.5	1.5
Merged-chr9-45248280-1	chr9	45247780	45248780	+	1000.0	f0_balb.idr	intron (NM_001198971, intron 4 of 4)	intron (NM_001198971, intron 4 of 4)	18427.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65294414-4	chr5	65293906	65294906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011258, intron 8 of 24)	intron (NM_011258, intron 8 of 24)	41233.0	NM_011258	19687.0	Mm.148877	NM_011258	ENSMUSG00000029191	Rfc1	140kDa|Alp145|RFC140|Recc1	replication factor C (activator 1) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88505964-3	chr15	88505441	88506441	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94361.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	3.0	5.5	5.5	0.0	3.0	1.0
Merged-chr3-107106208-4	chr3	107105699	107106699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008417, exon 3 of 3)	3' UTR (NM_008417, exon 3 of 3)	4632.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	15.0	16.0	8.0	16.0	23.0	4.0
Merged-chr11-120071247-4	chr11	120070732	120071732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009734, intron 13 of 25)	intron (NM_009734, intron 13 of 25)	15595.0	NM_009734	12009.0	Mm.2556	NM_009734	ENSMUSG00000039781	Cep131	AZ1|Azi|Azi1	centrosomal protein 131	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr2-152080933-4	chr2	152080430	152081430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160410)	promoter-TSS (NM_001160410)	-599.0	NM_001160410	545474.0	Mm.214317	NM_001160410	ENSMUSG00000060257	Scrt2	AW060659	scratch family zinc finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122852904-4	chr6	122852426	122853426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009779, intron 1 of 1)	MTD|LTR|ERVL-MaLR	3231.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122821380-4	chr5	122820867	122821867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021505)	promoter-TSS (NM_021505)	-25.0	NM_001289519	59008.0	Mm.332667	NM_021505	ENSMUSG00000029472	Anapc5	2510006G12Rik|AA408751|AA536819|AA986414|APC5|Anpc5	anaphase-promoting complex subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101900503-1	chr7	101900003	101901003	+	1000.0	f0_balb.idr	TTS (NM_027532)	TTS (NM_027532)	3282.0	NM_001282088	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41335910-4	chr19	41335403	41336403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	49167.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	106.0	139.5	93.5	69.5	143.5	100.0
Merged-chr17-34972299-5	chr17	34971757	34972757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013558)	promoter-TSS (NM_013558)	-101.0	NM_010479	193740.0	Mm.6388	NM_010479	ENSMUSG00000091971	Hspa1a	Hsp70-3|Hsp70.3|Hsp72|hsp68|hsp70A1	heat shock protein 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32113748-4	chr16	32113266	32114266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13964.0	NM_025892	66994.0	Mm.22990	NM_025892	ENSMUSG00000035790	Cep19	1500031L02Rik|AI428934|AL022620	centrosomal protein 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144011398-4	chr2	144010898	144011898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024281)	promoter-TSS (NM_024281)	-135.0	NM_024281	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24577487-4	chr5	24576925	24577925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190443)	promoter-TSS (NM_001190443)	42.0	NM_013853	27407.0	Mm.21629	NM_013853	ENSMUSG00000028953	Abcf2	0710005O05Rik|Drr3|E430001O06	ATP-binding cassette, sub-family F (GCN20), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87017922-4	chr3	87017414	87018414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18574.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	73.0	120.0	81.0	68.0	142.0	115.0
Merged-chr4-145258228-4	chr4	145257732	145258732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11362.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171226440-4	chr1	171225946	171226946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_131173)	TTS (NR_131173)	1392.0	NM_013474	11807.0	Mm.389209	NM_013474	ENSMUSG00000005681	Apoa2	Alp-2|Apo-AII|ApoA-II|ApoAII|Apoa-2|Hdl-1	apolipoprotein A-II	protein-coding	40.0	156.5	97.5	53.5	84.0	57.5
Merged-chr4-32161040-4	chr4	32160521	32161521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	196914.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	64.0	108.0	97.5	71.0	120.0	77.0
Merged-chr15-58980363-4	chr15	58979866	58980866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	46556.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74339337-7	chr17	74338859	74339859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001162870, exon 1 of 17)	exon (NM_001162870, exon 1 of 17)	372.0	NM_016962	50850.0	Mm.19804	NM_016962	ENSMUSG00000024068	Spast	Spg4|mKIAA1083	spastin	protein-coding	27.0	77.5	69.0	14.0	30.5	32.0
Merged-chr4-108459412-4	chr4	108458931	108459931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175472)	promoter-TSS (NM_175472)	5.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167921116-2	chr2	167920616	167921616	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11211.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80812092-4	chr12	80811608	80812608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	21576.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166467319-4	chr2	166466818	166467818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19867.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100961320-4	chr7	100960833	100961833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	3033.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	52.0	72.0	77.5	24.0	102.0	69.5
Merged-chr7-4866267-4	chr7	4865773	4866773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026158)	promoter-TSS (NM_026158)	-94.0	NM_026158	67441.0	Mm.41385	NM_026158	ENSMUSG00000052605	Isoc2b	0610042E07Rik|AI553388|Isoc2	isochorismatase domain containing 2b	protein-coding	108.5	221.0	168.0	47.0	138.0	113.5
Merged-chr10-119064753-2	chr10	119064253	119065253	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14254.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103469633-4	chr14	103469155	103470155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43686.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46891669-2	chr8	46891169	46892169	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-95218.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112927509-4	chr13	112927030	112928030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172594)	promoter-TSS (NM_172594)	-150.0	NM_028151	72198.0	Mm.291029	NM_028151	ENSMUSG00000016018	Skiv2l2	2610528A15Rik|Mtrex|mKIAA0052	superkiller viralicidic activity 2-like 2 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9886822-4	chr3	9886318	9887318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-53139.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	42.0	56.0	22.0	27.5	23.5	6.0
Merged-chr10-12868776-1	chr10	12868276	12869276	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-7041.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	35.0	85.5	69.0	28.0	108.5	57.0
Merged-chr11-97685833-4	chr11	97685336	97686336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085500)	promoter-TSS (NM_001085500)	-116.0	NM_001085500	217149.0	Mm.29659	NM_001085500	ENSMUSG00000078695	Cisd3	Mel-13|Mel13	CDGSH iron sulfur domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-119504823-4	chr1	119504316	119505316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022327)	promoter-TSS (NM_022327)	-34.0	NM_022327	64143.0	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	21.0	80.5	70.5	53.0	46.5	54.5
Merged-chr12-54696937-4	chr12	54696408	54697408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	U1|snRNA|snRNA	-1014.0	NM_025456	66266.0	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding	152.5	332.0	186.0	146.5	243.5	180.5
Merged-chr8-110846611-4	chr8	110846112	110847112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310607)	promoter-TSS (NM_001310607)	12.0	NM_001310607	102339.0	Mm.272930	NM_133973	ENSMUSG00000031753	Cog4	AW554810|D8Ertd515e	component of oligomeric golgi complex 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64298441-4	chr5	64297949	64298949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 11 of 18)	intron (NM_001289514, intron 11 of 18)	68092.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	60.0	114.5	111.0	13.5	32.5	20.5
Merged-chr10-29361907-6	chr10	29361536	29362536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001110196, exon 1 of 3)	5' UTR (NM_001110196, exon 1 of 3)	406.0	NM_026518	68031.0	Mm.28930	NM_026518	ENSMUSG00000038876	Rnf146	2610509H23Rik|Iduna	ring finger protein 146	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80773603-1	chr7	80773103	80774103	+	1000.0	f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	29728.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	6.5	20.0	12.5	2.5	6.0	14.0
Merged-chr2-34943912-4	chr2	34943409	34944409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001326601, exon 10 of 10)	exon (NM_001326601, exon 10 of 10)	17863.0	NM_009421	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61700231-2	chr11	61699731	61700731	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178618, intron 2 of 4)	intron (NM_178618, intron 2 of 4)	15821.0	NM_178618	69640.0	Mm.458559	NM_178618	ENSMUSG00000042377	Fam83g	2310040C09Rik|AI506990|wly	family with sequence similarity 83, member G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49083327-2	chr11	49082827	49083827	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271677, intron 1 of 2)	intron (NM_001271677, intron 1 of 2)	-3690.0	NM_001271676	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4200648-2	chr19	4200148	4201148	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011237, intron 3 of 10)	intron (NM_011237, intron 3 of 10)	955.0	NM_011237	19367.0	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-17001137-4	chr11	17000636	17001636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	RMER19C|LTR|ERVK	7582.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4882043-2	chr16	4881543	4882543	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2192.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72144556-4	chr8	72144050	72145050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001491, intron 3 of 7)	intron (NM_001001491, intron 3 of 7)	9258.0	NM_001001491	326618.0	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	28.5	33.0	17.0	48.5	66.0	60.0
Merged-chr9-50768350-4	chr9	50767839	50768839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361107)	promoter-TSS (NM_001361107)	101.0	NM_198675	382137.0	Mm.390169	NM_198675	ENSMUSG00000037845	Fdxacb1	D630004A14Rik	ferredoxin-fold anticodon binding domain containing 1	protein-coding	27.5	65.5	44.5	37.0	43.0	38.5
Merged-chr4-116807670-4	chr4	116807172	116808172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133250)	promoter-TSS (NM_133250)	-62.0	NM_133250	70603.0	Mm.180333	NM_133250	ENSMUSG00000028687	Mutyh	5730495A01Rik|Mutyha|Mutyhalpha|Mutyhb|Mutyhbeta|Mutyhc|Myh	mutY DNA glycosylase	protein-coding	39.5	125.5	95.5	57.5	174.5	103.0
Merged-chr2-166472278-4	chr2	166471777	166472777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B3|LTR|ERVL	24826.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155070643-4	chr1	155070128	155071128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151545, intron 3 of 6)	intron (NR_151545, intron 3 of 6)	12636.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-37769513-4	chr3	37769000	37770000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45140.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-41025795-4	chr8	41025314	41026314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 5 of 13)	MTC|LTR|ERVL-MaLR	8346.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	77.0	175.0	97.0	19.5	67.0	47.0
Merged-chr18-75697641-4	chr18	75697134	75698134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201354)	promoter-TSS (NM_201354)	62.0	NM_201354	269037.0	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	0.0	0.0	1.5	0.0	7.0	2.5
Merged-chr13-23769219-4	chr13	23768730	23769730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5562.0	NM_030609	80838.0	Mm.480242	NM_030609	ENSMUSG00000049539	Hist1h1a	H1.1|H1a|H1f1|H1var3	histone cluster 1, H1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-72532070-10	chr9	72531654	72532654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045735)	promoter-TSS (NR_045735)	-86.0	NM_001033536	319758.0	Mm.32081	NM_001033536	ENSMUSG00000037674	Rfx7	2510005N23Rik|9930116O05Rik|D130086K05Rik|Rfxdc2	regulatory factor X, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5510929-1	chr11	5510429	5511429	+	1000.0	f1_balb.idr	Intergenic	RLTR28B|LTR|ERVL	-9712.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	64.0	59.0	56.5	17.5	34.0	9.5
Merged-chr12-81735940-2	chr12	81735440	81736440	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001174107, intron 3 of 10)	intron (NM_001174107, intron 3 of 10)	45230.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100436873-2	chr13	100436373	100437373	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008670, intron 5 of 15)	intron (NM_008670, intron 5 of 15)	15991.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59745342-2	chr15	59744842	59745842	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49617.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101879906-4	chr13	101879399	101880399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111682.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-112739213-4	chr6	112738734	112739734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080448, intron 16 of 21)	intron (NM_080448, intron 16 of 21)	-42564.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79088506-1	chr11	79088006	79089006	+	1000.0	f0_c57.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	-28670.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104263067-4	chr9	104262575	104263575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163026)	promoter-TSS (NM_001163026)	-145.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-94617350-4	chr9	94616865	94617865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52527.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	0.0	4.0	4.5	0.0	0.0	2.5
Merged-chr8-70282916-4	chr8	70282410	70283410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011984)	promoter-TSS (NM_011984)	-89.0	NM_011984	26558.0	Mm.388127	NM_011984	ENSMUSG00000003573	Homer3	AW146114	homer scaffolding protein 3	protein-coding	9.5	13.5	14.0	11.0	55.5	21.0
Merged-chr14-40921418-4	chr14	40920938	40921938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	26771.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154990558-3	chr2	154990003	154991003	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-23067.0	NM_015770	50518.0	Mm.315593	NM_015770	ENSMUSG00000027596	a	A<y>|ASIP|ASP|As	nonagouti	protein-coding	4.5	1.5	0.5	43.5	155.5	99.5
Merged-chr13-112337321-4	chr13	112336824	112337824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168403, intron 6 of 11)	intron (NM_001168403, intron 6 of 11)	48806.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	3.5	0.5	3.5	4.0	5.5	5.5
Merged-chr19-3914717-4	chr19	3914229	3915229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026316, intron 9 of 9)	intron (NM_026316, intron 9 of 9)	-1955.0	NM_001271444	225887.0	Mm.44227	NM_144870	ENSMUSG00000059734	Ndufs8	BC021616|CI-23kD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58847130-4	chr11	58846630	58847630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6014.0	NM_146537	258530.0	Mm.377556	NM_146537	ENSMUSG00000094805	Olfr311	MOR222-1	olfactory receptor 311	protein-coding	13.0	24.5	26.0	19.0	20.5	36.5
Merged-chr3-52502899-4	chr3	52502400	52503400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14064.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	0.0	8.5	6.0	3.0	0.0	7.5
Merged-chr9-57990795-2	chr9	57990295	57991295	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7229.0	NM_001346787	13070.0	Mm.302865	NM_019779	ENSMUSG00000032323	Cyp11a1	Cyp11a|Cypxia1|D9Ertd411e|P450scc|Scc|cscc	cytochrome P450, family 11, subfamily a, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121547473-2	chr11	121546973	121547973	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029878, intron 14 of 38)	intron (NM_029878, intron 14 of 38)	-28131.0	NM_178763	319530.0	Mm.11395	NM_178763	ENSMUSG00000039238	Zfp750	A030007D23Rik|Znf750	zinc finger protein 750	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57261627-4	chr9	57261114	57262114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028820, intron 1 of 2)	CpG	985.0	NM_028820	74211.0	Mm.428905	NM_028820	ENSMUSG00000032300	1700017B05Rik	AA682102|D9Ertd278e	RIKEN cDNA 1700017B05 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40801130-7	chr9	40800627	40801627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031165)	promoter-TSS (NM_031165)	-146.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	98.5	268.0	217.0	54.5	135.0	119.0
Merged-chr2-91194879-4	chr2	91194384	91195384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013839, exon 1 of 10)	5' UTR (NM_013839, exon 1 of 10)	151.0	NM_013839	22259.0	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	22.5	53.0	67.0	34.5	55.5	50.5
Merged-chr18-10181490-4	chr18	10180986	10181986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009071, exon 1 of 33)	5' UTR (NM_009071, exon 1 of 33)	306.0	NM_009071	19877.0	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51882116-4	chr3	51881629	51882629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	220950.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59823150-4	chr13	59822635	59823635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153538)	promoter-TSS (NM_153538)	12.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20082843-4	chr14	20082349	20083349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026209, intron 1 of 1)	CpG	323.0	NM_026209	67509.0	Mm.292423	NM_026209	ENSMUSG00000045107	Saysd1	1810063B07Rik|4930488P03Rik	SAYSVFN motif domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110166082-4	chr11	110165591	110166591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_147220, intron 1 of 38)	intron (NM_147220, intron 1 of 38)	2062.0	NM_147220	217262.0	Mm.291459	NM_147220	ENSMUSG00000041797	Abca9	D630040K07Rik	ATP-binding cassette, sub-family A (ABC1), member 9	protein-coding	16.0	10.0	28.0	12.0	25.5	27.0
Merged-chr10-121364999-4	chr10	121364472	121365472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029364)	promoter-TSS (NM_029364)	-118.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	30.0	77.5	65.5	41.5	78.0	89.0
Merged-chr5-33378533-4	chr5	33378018	33379018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081101)	promoter-TSS (NM_001081101)	-178.0	NR_153108	71101.0	Mm.132178	NM_027674	ENSMUSG00000037355	Uvssa	4933407H18Rik|D330017J19Rik|Kiaa1530|mKIAA1530	UV stimulated scaffold protein A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125481903-4	chr6	125481348	125482348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007657, intron 1 of 7)	intron (NM_007657, intron 1 of 7)	12912.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	1.5	14.5	5.0	0.0	0.0	0.0
Merged-chr5-52476418-4	chr5	52475926	52476926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4883.0	NM_001256059	100503884.0	Mm.332379	NM_001256059	ENSMUSG00000045790	Ccdc149	Gm447	coiled-coil domain containing 149	protein-coding	1.5	3.0	0.0	0.0	1.5	3.5
Merged-chr1-37865204-4	chr1	37864690	37865690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207228)	promoter-TSS (NM_207228)	-108.0	NM_207228	211484.0	Mm.332756	NM_207228	ENSMUSG00000060771	Tsga10	4933432N21Rik|AI843383|Gm217|Mtsga10	testis specific 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112343141-4	chr5	112342597	112343597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027323)	promoter-TSS (NM_027323)	2.0	NM_138646	192232.0	Mm.238043	NM_138646	ENSMUSG00000042328	Hps4	2010205O06Rik|AU040608|BLOC-3|C130020P05Rik|le|mKIAA1667	HPS4, biogenesis of lysosomal organelles complex 3 subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-144768063-4	chr5	144767558	144768558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081362)	promoter-TSS (NM_001081362)	-734.0	NM_001081362	100683.0	Mm.273570	NM_001081362	ENSMUSG00000045482	Trrap	AI481500	transformation/transcription domain-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12168024-4	chr18	12167513	12168513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029623)	promoter-TSS (NM_029623)	-717.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	0.5	2.0	0.0	0.0	2.0	0.0
Merged-chr3-51224784-6	chr3	51224270	51225270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009834, exon 1 of 3)	5' UTR (NM_009834, exon 1 of 3)	323.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118883485-4	chr2	118882974	118883974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-18141.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	4.0	23.5	7.5	1.0	3.0	4.5
Merged-chr12-30606901-4	chr12	30606399	30607399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22456.0	NM_172049	211986.0	Mm.34035	NM_172049	ENSMUSG00000043061	Tmem18	BC024093	transmembrane protein 18	protein-coding	12.0	35.0	25.0	8.5	19.5	13.0
Merged-chr6-37723554-4	chr6	37723067	37724067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147244.0	NM_001272064	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23706193-4	chr13	23705677	23706677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347493, intron 2 of 4)	intron (NM_001347493, intron 2 of 4)	4677.0	NM_001347493	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	29.5	65.5	26.5	16.5	92.0	30.5
Merged-chr17-66519795-4	chr17	66519325	66520325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024448)	promoter-TSS (NM_024448)	-155.0	NM_024448	19328.0	Mm.248313	NM_024448	ENSMUSG00000023460	Rab12	2900054P15Rik|AW555448|C77700	RAB12, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75047293-4	chr11	75046813	75047813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 12 of 18)	intron (NM_001002764, intron 12 of 18)	18678.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67526083-4	chr7	67525592	67526592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028144, intron 8 of 8)	MER21B|LTR|ERVL	119144.0	NM_175124	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	36.5	80.5	42.0	65.0	94.0	116.0
Merged-chr8-70354205-4	chr8	70353710	70354710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122829)	promoter-TSS (NM_001122829)	-931.0	NM_001122829	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	43.0	89.0	71.0	27.0	74.5	43.0
Merged-chr14-34310511-4	chr14	34310024	34311024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008133)	promoter-TSS (NM_008133)	-7.0	NM_001360074	75698.0	Mm.45406	NM_029389	ENSMUSG00000041471	Fam35a	3110001K24Rik	family with sequence similarity 35, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125039705-4	chr6	125039199	125040199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133345)	promoter-TSS (NM_133345)	-149.0	NM_133345	28019.0	Mm.262547	NM_133345	ENSMUSG00000030330	Ing4	D6Wsu147e|D6Xrf92|p29ING4	inhibitor of growth family, member 4	protein-coding	43.5	179.0	114.5	45.0	167.5	114.0
Merged-chr1-77279752-4	chr1	77279260	77280260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	217008.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	34.5	39.0	40.0	34.0	39.0	57.0
Merged-chr19-4121186-4	chr19	4120680	4121680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016666, intron 2 of 6)	intron (NM_016666, intron 2 of 6)	395.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108200568-4	chr3	108200182	108201182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081320, exon 1 of 3)	exon (NM_001081320, exon 1 of 3)	152.0	NM_028061	72023.0	Mm.246391	NM_028061	ENSMUSG00000048796	Cyb561d1	1600010M23Rik|AI605489|AW457162	cytochrome b-561 domain containing 1	protein-coding	9.5	24.5	22.5	13.0	38.0	20.5
Merged-chr7-19321605-4	chr7	19321096	19322096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-11551.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	9.0	7.5	7.0	8.0	4.5	7.0
Merged-chr14-32321993-2	chr14	32321493	32322493	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081130)	promoter-TSS (NM_001081130)	-26.0	NM_001081130	239017.0	Mm.318302	NM_001081130	ENSMUSG00000021913	Ogdhl	-	oxoglutarate dehydrogenase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64374076-4	chr7	64373568	64374568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177893)	promoter-TSS (NM_177893)	27.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82913233-4	chr18	82912691	82913691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183033, intron 1 of 5)	intron (NM_183033, intron 1 of 5)	-1441.0	NM_001177464	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28702869-4	chr17	28702379	28703379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	10311.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10990693-2	chr16	10990193	10991193	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	2428.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88356372-2	chr10	88355872	88356872	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 1 of 6)	PB1D9|SINE|Alu	703.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118709117-1	chr10	118708617	118709617	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-152592.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117872797-4	chr10	117872309	117873309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26835.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	15.0	53.0	26.0	3.5	25.5	24.0
Merged-chr1-89580482-2	chr1	89579982	89580982	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	CpG	103410.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-77034866-4	chr16	77034354	77035354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 2 of 23)	MIR|SINE|MIR	20785.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53820858-3	chr11	53820352	53821352	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 2 of 3)	intron (NR_033332, intron 2 of 3)	38404.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97946078-4	chr11	97945596	97946596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163608, intron 7 of 13)	MTD|LTR|ERVL-MaLR	40350.0	NM_028199	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	8.0	20.5	11.0	18.0	13.0	15.5
Merged-chr10-111972656-4	chr10	111972150	111973150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178610)	promoter-TSS (NM_178610)	-45.0	NM_178610	52705.0	Mm.34606	NM_178610	ENSMUSG00000063334	Krr1	2610511F02Rik|AI255219|AI428520|D10Ertd773e|Hrb2	KRR1, small subunit (SSU) processome component, homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96332419-2	chr10	96331919	96332919	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106212.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43930662-4	chr19	43930121	43931121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028029, intron 1 of 15)	intron (NM_028029, intron 1 of 15)	9577.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	13.5	21.0	19.5	5.5	37.5	27.5
Merged-chr8-11249989-4	chr8	11249472	11250472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009931, intron 2 of 51)	intron (NM_009931, intron 2 of 51)	-62833.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4258929-4	chr11	4258435	4259435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008501, intron 1 of 3)	intron (NM_008501, intron 1 of 3)	1367.0	NM_008501	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84680703-4	chr18	84680197	84681197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023149, intron 3 of 11)	intron (NM_023149, intron 3 of 11)	1362.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-24709881-2	chr18	24709381	24710381	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289654, intron 1 of 24)	CpG	1258.0	NM_001289655	225288.0	Mm.329322	NM_175276	ENSMUSG00000034295	Fhod3	A930009H06Rik|FHOS2|mKIAA1695	formin homology 2 domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127641984-4	chr10	127641496	127642496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009284)	promoter-TSS (NM_009284)	-990.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	53.5	79.0	50.5	30.0	66.0	64.0
Merged-chr8-126747647-4	chr8	126747142	126748142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101378.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	5.0	48.5	34.0	10.5	24.5	33.5
Merged-chr2-174473066-4	chr2	174472574	174473574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025531)	promoter-TSS (NM_025531)	-133.0	NM_025531	66390.0	Mm.182294	NM_025531	ENSMUSG00000016257	Prelid3b	2310042G06Rik|AA407013|Slmo2	PRELI domain containing 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124829490-4	chr6	124828984	124829984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001326594)	promoter-TSS (NM_001326594)	0.0	NM_001326594	22225.0	Mm.3571	NM_013700	ENSMUSG00000038429	Usp5	AA407472|ISOT|ISOT-1|Ucht	ubiquitin specific peptidase 5 (isopeptidase T)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-52625197-1	chr12	52624697	52625697	+	1000.0	f0_balb.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-22875.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44388645-4	chr19	44388153	44389153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19056.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	121.0	252.0	197.5	122.5	282.5	234.0
Merged-chr12-102456611-4	chr12	102456086	102457086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-12548.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	130.5	456.5	360.0	157.0	411.5	289.0
Merged-chr1-75141677-4	chr1	75141154	75142154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356264)	promoter-TSS (NM_001356264)	37.0	NM_001356264	69171.0	Mm.28193	NM_026977	ENSMUSG00000033159	Cnppd1	1810031K17Rik|AU043960	cyclin Pas1/PHO80 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39526987-4	chr6	39526509	39527509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172477, intron 1 of 18)	intron (NM_172477, intron 1 of 18)	30825.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118454013-4	chr11	118453524	118454524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045902, intron 1 of 2)	L1MB8|LINE|L1	971.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121496778-4	chr10	121496270	121497270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-20520.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	10.5	16.0	18.0	17.5	31.5	28.5
Merged-chr3-122302350-2	chr3	122301850	122302850	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8647.0	NR_030439	791077.0		NR_030439	ENSMUSG00000076456	Mir760	Mirn760|mir-760|mmu-mir-760	microRNA 760	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57037339-4	chr15	57036853	57037853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	227808.0	NM_001357930	210463.0	Mm.26555	NM_172378	ENSMUSG00000022366	Slc22a22	oat-pg	solute carrier family 22 (organic cation transporter), member 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68901482-4	chr11	68900963	68901963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003373)	promoter-TSS (NR_003373)	-103.0	NM_009080	19941.0	Mm.3229	NM_009080	ENSMUSG00000060938	Rpl26	SIG-20	ribosomal protein L26	protein-coding	93.0	125.5	100.0	67.5	124.0	79.5
Merged-chr15-58692046-4	chr15	58691541	58692541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	131386.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121877581-4	chr14	121877075	121878075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130999, intron 1 of 1)	intron (NR_130999, intron 1 of 1)	695.0	NR_131002	78312.0	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51577650-2	chr11	51577150	51578150	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153393, intron 27 of 28)	intron (NM_153393, intron 27 of 28)	-7107.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-26220025-4	chr6	26219485	26220485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D5|LTR|ERVK	288559.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84701384-4	chr8	84700872	84701872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008535)	promoter-TSS (NM_008535)	-85.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	15.0	31.5	35.0	14.5	43.0	31.0
Merged-chr16-15956607-4	chr16	15956122	15957122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 9 of 18)	intron (NM_001355731, intron 9 of 18)	69336.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36730895-4	chr5	36730388	36731388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17791.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	0.0	2.5	4.0	0.0	1.0	1.0
Merged-chr11-3427844-4	chr11	3427360	3428360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290473, intron 2 of 5)	intron (NM_001290473, intron 2 of 5)	-18622.0	NM_010718	16886.0	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79630434-4	chr12	79629938	79630938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	294295.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104232167-4	chr9	104231650	104232650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 6 of 56)	intron (NM_001359740, intron 6 of 56)	30780.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31201320-4	chr16	31200828	31201828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030138)	promoter-TSS (NM_030138)	-90.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	23.0	85.5	103.0	51.0	121.5	88.5
Merged-chr4-118144520-4	chr4	118144014	118145014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161823, intron 16 of 21)	intron (NM_001161823, intron 16 of 21)	-9568.0	NM_001161774	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	13.0	22.5	26.0	7.0	41.5	32.5
Merged-chr1-36068235-4	chr1	36067753	36068753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015818)	promoter-TSS (NM_015818)	-147.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65214669-2	chr9	65214169	65215169	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177460)	promoter-TSS (NM_177460)	-21.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13304237-4	chr9	13303741	13304741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57285.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-56075954-4	chr16	56075416	56076416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360073, intron 3 of 24)	CpG	436.0	NM_001304503	66315.0	Mm.255784	NM_025483	ENSMUSG00000052917	Senp7	2410152H17Rik|2810413I22Rik|2900036C23Rik|6030449K19Rik|AI790676	SUMO1/sentrin specific peptidase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-40919696-4	chr14	40919198	40920198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	-26733.0	NM_177816	328381.0	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-31760519-3	chr18	31760038	31761038	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001242430)	promoter-TSS (NM_001242430)	-78.0	NM_001242430	225339.0	Mm.290804	NM_153515	ENSMUSG00000041915	Ammecr1l	5430429D03Rik|AU022236|AU040755|AW111353|E230022H04Rik	AMME chromosomal region gene 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98513045-4	chr15	98512533	98513533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6801.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62287631-4	chr4	62287141	62288141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025286, intron 1 of 3)	intron (NM_025286, intron 1 of 3)	1212.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95888849-4	chr13	95888327	95889327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	3095.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	118.0	343.0	294.0	59.5	192.0	157.5
Merged-chr15-84994635-4	chr15	84994098	84995098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-6627.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-77266135-7	chr5	77265630	77266630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011263, intron 1 of 3)	CpG	636.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25365207-4	chr2	25364713	25365713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149315, intron 1 of 8)	CpG	450.0	NR_149315	227620.0	Mm.33797	NM_001033293	ENSMUSG00000026956	Uap1l1	5730445F03Rik	UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-162005434-5	chr1	162004940	162005940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040562, exon 2 of 3)	non-coding (NR_040562, exon 2 of 3)	471.0	NR_040562	72753.0	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA	193.5	342.5	272.5	146.5	231.0	201.5
Merged-chr15-62046486-4	chr15	62045994	62046994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	7237.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21077253-4	chr10	21076756	21077756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177776, intron 6 of 6)	intron (NM_001177776, intron 6 of 6)	36436.0	NM_001177776	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3964935-4	chr11	3964433	3965433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022889, intron 1 of 14)	intron (NM_022889, intron 1 of 14)	958.0	NM_022889	64934.0	Mm.28659	NM_022889	ENSMUSG00000020430	Pes1	-	pescadillo ribosomal biogenesis factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34473609-2	chr1	34473109	34474109	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011206, exon 15 of 15)	exon (NM_011206, exon 15 of 15)	13863.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5408623-7	chr19	5408104	5409104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027938, intron 1 of 3)	L2|LINE|L2	1789.0	NR_027938	74931.0	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	147.0	331.0	216.0	138.5	235.5	151.0
Merged-chr15-98993224-4	chr15	98992716	98993716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	7251.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-15594458-4	chr16	15593954	15594954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023585)	promoter-TSS (NM_023585)	64.0	NM_001159351	70620.0	Mm.235407	NM_023585	ENSMUSG00000022674	Ube2v2	1110021H13Rik|4632410D19Rik|5730524P06Rik|6820402M05|AI848315|C81524|MMS2	ubiquitin-conjugating enzyme E2 variant 2	protein-coding	36.5	140.0	140.0	90.5	243.0	204.5
Merged-chr18-84807824-4	chr18	84807329	84808329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43509.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24165022-4	chr5	24164529	24165529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346582)	promoter-TSS (NM_001346582)	66.0	NM_001346582	231042.0	Mm.45513	NM_153092	ENSMUSG00000048439	Nupl2	AV116043|CG1|NLP-1|Nlp1	nucleoporin like 2	protein-coding	11.0	24.5	21.0	5.5	25.5	16.5
Merged-chr18-57740342-4	chr18	57739842	57740842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD|LINE|L1	39653.0	NR_152224	100503033.0	Mm.381112	NR_152224		Gm19519	-	predicted gene, 19519	ncRNA	2.0	8.5	10.5	4.5	9.5	7.5
Merged-chr2-144556174-4	chr2	144555644	144556644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019787)	promoter-TSS (NM_019787)	-85.0	NM_001252544	27054.0	Mm.248492	NM_019787	ENSMUSG00000027429	Sec23b	-	SEC23 homolog B, COPII coat complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82258642-2	chr15	82258142	82259142	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_037698, intron 1 of 1)	intron (NR_037698, intron 1 of 1)	2619.0	NR_037698	76505.0	Mm.23023	NR_037697	ENSMUSG00000068099	1500009C09Rik	-	RIKEN cDNA 1500009C09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75176783-4	chr14	75176310	75177310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	40385.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-71004498-4	chr11	71003966	71004966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178367)	promoter-TSS (NM_178367)	-34.0	NM_178367	216877.0	Mm.35399	NM_178367	ENSMUSG00000040620	Dhx33	3110057P17Rik|9430096J02Rik|Ddx33	DEAH (Asp-Glu-Ala-His) box polypeptide 33	protein-coding	21.5	44.0	21.5	5.5	40.0	25.5
Merged-chr4-132329517-4	chr4	132329022	132330022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027925)	promoter-TSS (NM_027925)	16.0	NM_027925	71787.0	Mm.239183	NM_027925	ENSMUSG00000028898	Trnau1ap	1110007F05Rik|AA387999|Secp43|Trspap1|WI1-2643G14.2	tRNA selenocysteine 1 associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112502158-2	chr13	112501658	112502658	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010560, intron 15 of 16)	L1M4|LINE|L1	38088.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85374929-1	chr11	85374429	85375429	+	1000.0	f0_balb.idr	intron (NM_138681, intron 6 of 25)	intron (NM_138681, intron 6 of 25)	21765.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119916447-2	chr11	119915947	119916947	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085498, intron 4 of 7)	intron (NM_001085498, intron 4 of 7)	2637.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136987515-4	chr5	136987013	136988013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310747)	promoter-TSS (NM_001310747)	446.0	NM_027318	70103.0	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	129.0	217.5	265.0	141.0	336.0	250.0
Merged-chr11-71019450-4	chr11	71018944	71019944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291147)	promoter-TSS (NM_001291147)	-141.0	NM_033562	116891.0	Mm.28131	NM_033562	ENSMUSG00000018442	Derl2	CGI-101|Derlin-2|F-lana|Flana	Der1-like domain family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-18785936-3	chr13	18785446	18786446	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 5 of 28)	intron (NM_172120, intron 5 of 28)	68654.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87214337-4	chr1	87213863	87214863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001039169, exon 1 of 7)	5' UTR (NM_001039169, exon 1 of 7)	424.0	NM_001039169	26987.0	Mm.227183	NM_023314	ENSMUSG00000026254	Eif4e2	2700069E09Rik|AI036339|AV129531|D0H0S6743E|Eif4el3	eukaryotic translation initiation factor 4E member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-10038063-4	chr1	10037571	10038571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026493)	promoter-TSS (NM_026493)	88.0	NR_102282	26754.0	Mm.402384	NM_013715	ENSMUSG00000025917	Cops5	AI303502|CSN5|Jab1|Mov34|Sgn5	COP9 signalosome subunit 5	protein-coding	74.5	257.5	187.5	96.0	244.0	168.5
Merged-chr11-70460619-2	chr11	70460119	70461119	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023158)	promoter-TSS (NM_023158)	-635.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131658205-4	chr1	131657712	131658712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007799, intron 1 of 9)	intron (NM_007799, intron 1 of 9)	19898.0	NM_007799	13034.0	Mm.230249	NM_007799	ENSMUSG00000004552	Ctse	A430072O03Rik|C920004C08Rik|CE|CatE	cathepsin E	protein-coding	8.0	20.0	9.0	8.0	18.5	9.0
Merged-chr12-111670088-2	chr12	111669588	111670588	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021273, intron 6 of 7)	intron (NM_021273, intron 6 of 7)	2250.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88415268-4	chr4	88414765	88415765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025760, intron 6 of 6)	L1MA6|LINE|L1	23661.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21188148-2	chr5	21187648	21188648	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 1 of 26)	intron (NR_153365, intron 1 of 26)	1881.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-103532301-4	chr12	103531798	103532798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028980)	promoter-TSS (NM_028980)	-267.0	NM_028980	74521.0	Mm.248619	NM_028980	ENSMUSG00000021209	Ppp4r4	8430415E04Rik|mKIAA1622	protein phosphatase 4, regulatory subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-106483492-4	chr3	106482993	106483993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033207, intron 1 of 1)	intron (NR_033207, intron 1 of 1)	1043.0	NM_001278941	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	18.0	79.5	24.0	39.5	64.0	39.0
Merged-chr11-59202466-4	chr11	59201968	59202968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037964)	promoter-TSS (NR_037964)	-18.0	NM_001302335	67212.0	Mm.282694	NM_026035	ENSMUSG00000036860	Mrpl55	2810038N09Rik|L55mt|MRP-L55	mitochondrial ribosomal protein L55	protein-coding	104.0	267.5	189.5	208.5	486.0	373.0
Merged-chr16-87661301-4	chr16	87660803	87661803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37651.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	101.5	231.0	174.0	121.0	260.0	188.0
Merged-chr1-74284316-3	chr1	74283817	74284817	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025580)	promoter-TSS (NM_025580)	421.0	NM_001190444	227290.0	Mm.379371	NM_146110	ENSMUSG00000006299	Aamp	AU040907|Aamp-rs	angio-associated migratory protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103370595-4	chr15	103370062	103371062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3771.0	NM_001314041	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92907436-4	chr1	92906941	92907941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_138577)	TTS (NR_138577)	452.0	NM_175118	67446.0	Mm.46179	NM_175118	ENSMUSG00000047067	Dusp28	0710001B24Rik|AV005521	dual specificity phosphatase 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-112140002-4	chr10	112139510	112140510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23611.0	NM_001310675	353025.0	Mm.194428	NM_178278	ENSMUSG00000035694	Caps2	D630005B03Rik	calcyphosphine 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-98817205-3	chr14	98816701	98817701	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	228935.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-142095119-2	chr4	142094619	142095619	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10815.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	1.0	13.5	29.0	11.0	44.0	18.0
Merged-chr2-165955013-4	chr2	165954510	165955510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37627.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	32.5	135.5	102.5	62.0	131.0	85.5
Merged-chr2-170128866-2	chr2	170128366	170129366	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159683, intron 2 of 6)	intron (NM_001159683, intron 2 of 6)	2354.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4071608-2	chr19	4071108	4072108	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-10880.0	NM_001160253	29866.0	Mm.46268	NM_013878	ENSMUSG00000024857	Cabp2	-	calcium binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96875750-4	chr11	96875258	96876258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25365.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	7.5	22.5	11.5	1.0	11.5	7.0
Merged-chr7-90023195-4	chr7	90022699	90023699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5960.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	31.0	47.0	38.0	32.0	42.0	24.0
Merged-chr6-13874129-4	chr6	13873628	13874628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045995, intron 1 of 2)	intron (NR_045995, intron 1 of 2)	2559.0	NR_045995	76311.0	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70529503-2	chr8	70529003	70530003	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001199631, exon 2 of 9)	exon (NM_001199631, exon 2 of 9)	1657.0	NM_001199631	14232.0	Mm.141864	NM_010223	ENSMUSG00000019428	Fkbp8	38kDa|FKBP-38|FKBP-8|FKBPR38|Fkbp38|mFKBP38	FK506 binding protein 8	protein-coding	14.5	1.0	0.0	0.0	2.0	0.0
Merged-chr9-75434716-4	chr9	75434236	75435236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6788.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	46.0	122.0	77.0	41.0	136.5	65.5
Merged-chr1-16571142-4	chr1	16570628	16571628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_073122, exon 5 of 5)	non-coding (NR_073122, exon 5 of 5)	48210.0	NM_025773	66799.0	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52012610-4	chr6	52012106	52013106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018773)	promoter-TSS (NM_018773)	-57.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55314561-2	chr12	55314061	55315061	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025373, intron 3 of 6)	MLT1C|LTR|ERVL-MaLR	-11561.0	NM_021529	59032.0	Mm.427307	NM_021529	ENSMUSG00000021022	Ppp2r3c	4930511A21Rik|5730412A08Rik|G4-1|G5pr	protein phosphatase 2, regulatory subunit B'', gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-18925119-4	chr11	18924612	18925612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010789, intron 8 of 11)	intron (NM_010789, intron 8 of 11)	93857.0	NM_001193271	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98084852-4	chr7	98084345	98085345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008663, intron 16 of 48)	intron (NM_008663, intron 16 of 48)	24403.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	33.0	87.5	66.5	12.5	69.5	56.5
Merged-chr13-95375236-4	chr13	95374648	95375648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_025630, exon 1 of 14)	5' UTR (NM_025630, exon 1 of 14)	209.0	NM_025630	66549.0	Mm.36785	NM_025630	ENSMUSG00000021681	Aggf1	2010009L17Rik|2310029P06Rik|AW112072|Peg3|VG5Q	angiogenic factor with G patch and FHA domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97830110-4	chr11	97829634	97830634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010688, intron 4 of 6)	intron (NM_010688, intron 4 of 6)	-10646.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	24.5	70.5	54.5	24.0	86.5	27.5
Merged-chr14-76179588-4	chr14	76179101	76180101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68710.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118110852-2	chr11	118110352	118111352	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167746, intron 16 of 80)	intron (NM_001167746, intron 16 of 80)	18367.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84218893-4	chr12	84218403	84219403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163501)	promoter-TSS (NM_001163501)	-22.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87443496-4	chr11	87442988	87443988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	15897.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	20.0	54.0	34.0	5.5	64.5	27.0
Merged-chr1-151040569-4	chr1	151040077	151041077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTTG)n|Simple_repeat|Simple_repeat	-47142.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5492562-4	chr17	5492064	5493064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146073)	promoter-TSS (NM_146073)	-36.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84767668-4	chr12	84767171	84768171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 1 of 3)	intron (NM_023409, intron 1 of 3)	5441.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49084868-4	chr7	49084347	49085347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	77311.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-129949589-4	chr3	129949085	129950085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025779, intron 1 of 7)	MLT1A|LTR|ERVL-MaLR	20621.0	NM_025779	66815.0	Mm.31056	NM_025779	ENSMUSG00000027994	Mcub	9030408N13Rik|Ccdc109b	mitochondrial calcium uniporter dominant negative beta subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129233038-4	chr6	129232559	129233559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040268, intron 3 of 3)	intron (NR_040268, intron 3 of 3)	4986.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	26.5	49.5	30.0	21.5	55.5	23.0
Merged-chr1-23432762-2	chr1	23432262	23433262	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49587.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	11.0	17.5	17.0	9.0	39.0	21.5
Merged-chr7-141193076-2	chr7	141192576	141193576	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130444, intron 1 of 5)	intron (NM_001130444, intron 1 of 5)	928.0	NM_001130444	15461.0	Mm.334313	NM_008284	ENSMUSG00000025499	Hras	H-ras|Ha-ras|Harvey-ras|Hras-1|Hras1|Kras2|c-H-ras|c-Ha-ras|c-rasHa|ras	Harvey rat sarcoma virus oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117829080-4	chr11	117828555	117829555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027827, intron 2 of 10)	intron (NM_027827, intron 2 of 10)	-3041.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125313920-4	chr6	125313411	125314411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010736)	promoter-TSS (NM_010736)	-26.0	NM_010736	17000.0	Mm.3122	NM_010736	ENSMUSG00000030339	Ltbr	AI256028|LTbetaR|Ltar|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFRrp|Tnfbr|Tnfrsf3	lymphotoxin B receptor	protein-coding	22.0	62.5	46.0	37.5	60.0	57.5
Merged-chr18-35771444-4	chr18	35770943	35771943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019912)	promoter-TSS (NM_019912)	-116.0	NM_019912	56550.0	Mm.180052	NM_019912	ENSMUSG00000091896	Ube2d2a	1500034D03Rik|Ubc2e|Ube2d2|ubc4	ubiquitin-conjugating enzyme E2D 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-18848550-4	chr6	18848030	18849030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133939)	promoter-TSS (NM_133939)	-105.0	NM_133939	76522.0	Mm.275158	NM_133939	ENSMUSG00000044155	Lsm8	2010003I05Rik|AW214405|Naa38	LSM8 homolog, U6 small nuclear RNA associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-177796111-4	chr1	177795604	177796604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007422, intron 1 of 12)	CpG	405.0	NM_007422	11566.0	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-103365906-4	chr9	103365378	103366378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134427)	promoter-TSS (NM_001134427)	-98.0	NM_175565	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17688931-4	chr6	17688402	17689402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5092.0	NM_001289626	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	6.0	17.0	24.5	7.0	16.0	16.5
Merged-chr3-88138401-4	chr3	88137904	88138904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3968.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-88459965-3	chr13	88459460	88460460	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-361512.0	NM_010103	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85502637-4	chr8	85502132	85503132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173866, intron 2 of 11)	intron (NM_173866, intron 2 of 11)	10015.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108809929-4	chr9	108809433	108810433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030729, intron 1 of 12)	intron (NM_030729, intron 1 of 12)	1553.0	NM_030729	80987.0	Mm.192416	NM_030729	ENSMUSG00000032598	Nckipsd	AF3P21|DIP1|ORF1|SPIN90|WASLBP|WISH|Wasbp	NCK interacting protein with SH3 domain	protein-coding	9.0	7.5	15.5	4.0	7.5	2.5
Merged-chr13-56183766-4	chr13	56183310	56184310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4925.0	NM_001168615	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	106.0	201.5	168.5	95.5	233.5	194.5
Merged-chr4-149781212-4	chr4	149780692	149781692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6925.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	66.5	118.5	98.0	78.5	178.0	106.5
Merged-chr17-45556795-6	chr17	45556299	45557299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008690, intron 1 of 5)	intron (NM_008690, intron 1 of 5)	1099.0	NM_001304956	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	49.5	120.0	70.5	82.0	137.0	72.0
Merged-chr10-43478077-4	chr10	43477576	43478576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1064.0	NM_199028	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21274326-4	chr19	21273797	21274797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009551, intron 1 of 5)	intron (NM_009551, intron 1 of 5)	2019.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	139.5	277.0	266.5	134.5	253.5	266.0
Merged-chr3-132116320-4	chr3	132115804	132116804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020265, intron 1 of 3)	intron (NM_020265, intron 1 of 3)	31012.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145195028-4	chr4	145194548	145195548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276465)	promoter-TSS (NM_001276465)	-43.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45276913-4	chr2	45276426	45277426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-159484.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167294462-2	chr2	167293962	167294962	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53925.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139252607-4	chr4	139252112	139253112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 2 of 9)	intron (NM_001037761, intron 2 of 9)	58096.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	66.0	136.0	100.5	87.5	138.5	91.0
Merged-chr4-135856569-4	chr4	135856083	135857083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080387, intron 1 of 5)	CpG	512.0	NM_010178	14105.0	Mm.10229	NM_010178	ENSMUSG00000028676	Srsf10	FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84141087-4	chr17	84140668	84141668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46779.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-183094954-4	chr1	183094450	183095450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001278218, intron 8 of 8)	intron (NM_001278218, intron 8 of 8)	52607.0	NM_001278220	68897.0	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched RND transporter family member 1	protein-coding	14.5	26.0	30.0	14.0	12.5	15.0
Merged-chr10-67715196-4	chr10	67714667	67715667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143208.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143095741-4	chr7	143095238	143096238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1096.0	NM_020277	56843.0	Mm.286668	NM_020277	ENSMUSG00000009246	Trpm5	9430099A16Rik|LTrpC-5|Ltrpc5|Mtr1	transient receptor potential cation channel, subfamily M, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103379981-1	chr11	103379481	103380481	+	1000.0	f1_balb.idr	intron (NM_183034, intron 6 of 11)	intron (NM_183034, intron 6 of 11)	-16289.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0.0	2.0	5.0	5.0	3.0	9.0
Merged-chr3-95990583-4	chr3	95990066	95991066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023320, intron 5 of 5)	intron (NM_023320, intron 5 of 5)	5056.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97658209-4	chr3	97657707	97658707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182997)	promoter-TSS (NM_182997)	-5.0	NM_182997	108097.0	Mm.31175	NM_182997	ENSMUSG00000038205	Prkab2	5730553K21Rik|AW049591|BB124140	protein kinase, AMP-activated, beta 2 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-85326716-6	chr9	85326246	85327246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001160378, exon 2 of 3)	exon (NM_001160378, exon 2 of 3)	378.0	NM_001160378	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	20.0	107.0	75.0	34.0	128.0	115.5
Merged-chr12-83950663-4	chr12	83950169	83951169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023633)	promoter-TSS (NM_023633)	61.0	NM_023633	71952.0	Mm.251483	NM_023633	ENSMUSG00000046791	Riox1	2410016O06Rik|MAPJD|NO66	ribosomal oxygenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141245968-2	chr4	141245468	141246468	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172520, intron 2 of 16)	intron (NM_172520, intron 2 of 16)	3084.0	NM_172520	213649.0	Mm.134460	NM_172520	ENSMUSG00000028919	Arhgef19	6030432F23|6430573B13Rik|WGEF	Rho guanine nucleotide exchange factor (GEF) 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-96087167-3	chr6	96086669	96087669	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-25985.0	NM_182808	320265.0	Mm.489890	NM_182808	ENSMUSG00000059187	Fam19a1	C630007B19Rik|FAM19A1 TAFA-1|TAFA1|Tafa-1	family with sequence similarity 19, member A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4059391-4	chr19	4058837	4059837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001362043, exon 1 of 6)	5' UTR (NM_001362043, exon 1 of 6)	110.0	NM_144869	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-28026767-2	chr15	28026267	28027267	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081302)	promoter-TSS (NM_001081302)	-919.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26949427-2	chr17	26948927	26949927	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281491, intron 3 of 18)	intron (NM_001281491, intron 3 of 18)	-1308.0	NR_037244	100526534.0		NR_037244	ENSMUSG00000093118	Mir3083	mir-3083|mmu-mir-3083	microRNA 3083	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133584368-4	chr4	133583866	133584866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133884)	promoter-TSS (NM_133884)	-7.0	NM_001290742	100210.0	Mm.274001	NM_133884	ENSMUSG00000028848	Gpn2	AI838661|Atpbd1b|R74630	GPN-loop GTPase 2	protein-coding	80.0	173.0	154.0	68.5	160.0	152.0
Merged-chr4-139161243-4	chr4	139160731	139161731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	19424.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	37.0	50.0	40.5	23.0	38.5	31.0
Merged-chr2-66192015-4	chr2	66191515	66192515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001047604, intron 25 of 28)	intron (NM_001047604, intron 25 of 28)	64602.0	NM_001047604	73668.0	Mm.250868	NM_001047604	ENSMUSG00000034848	Ttc21b	2410066K11Rik|Thm1|aln|mKIAA1992	tetratricopeptide repeat domain 21B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-83538365-4	chr9	83537877	83538877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-9961.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	61.5	138.0	72.0	52.0	87.5	71.0
Merged-chr10-20059076-4	chr10	20058593	20059593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 10 of 29)	intron (NM_008580, intron 10 of 29)	-89827.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	23.0	45.0	30.0	36.0	31.0	25.5
Merged-chr12-111459509-2	chr12	111459009	111460009	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16848.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184034824-2	chr1	184034324	184035324	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028516)	promoter-TSS (NM_028516)	443.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	17.0	23.5	17.0	13.0	30.0	10.5
Merged-chr11-6200198-4	chr11	6199684	6200684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_173748, exon 1 of 6)	5' UTR (NM_173748, exon 1 of 6)	267.0	NM_173748	209586.0	Mm.25321	NM_173748	ENSMUSG00000053838	Nudcd3	AI427847|BC024322|mKIAA1068	NudC domain containing 3	protein-coding	24.0	65.0	29.0	16.5	58.5	51.5
Merged-chr1-151285304-4	chr1	151284807	151285807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59179.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123045999-2	chr5	123045499	123046499	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029112, intron 1 of 4)	intron (NM_029112, intron 1 of 4)	1017.0	NM_029112	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr16-56729277-4	chr16	56728773	56729773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172825, intron 15 of 15)	MTB|LTR|ERVL-MaLR	-11823.0	NM_001357126	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	9.0	10.5	1.5	0.0	3.0	9.0
Merged-chr11-46076672-4	chr11	46076161	46077161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291890, intron 3 of 22)	ORR1D1|LTR|ERVL-MaLR	20677.0	NM_001291891	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77372518-6	chr11	77372049	77373049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291190, intron 1 of 13)	intron (NM_001291190, intron 1 of 13)	24269.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-41013773-4	chr14	41013246	41014246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316735)	promoter-TSS (NM_001316735)	87.0	NM_001316734	70564.0	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-98923299-4	chr4	98922796	98923796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146144)	promoter-TSS (NM_146144)	-514.0	NM_001301414	230484.0	Mm.371692	NM_146144	ENSMUSG00000028560	Usp1	-	ubiquitin specific peptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55799051-4	chr16	55798547	55799547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23091.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38085684-2	chr16	38085184	38086184	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033221, exon 1 of 1)	non-coding (NR_033221, exon 1 of 1)	-3317.0	NM_001347232	56637.0	Mm.394930	NM_019827	ENSMUSG00000022812	Gsk3b	7330414F15Rik|8430431H08Rik|C86142|GSK-3|GSK-3beta|GSK3	glycogen synthase kinase 3 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr9-107553982-2	chr9	107553476	107554476	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019713)	promoter-TSS (NM_019713)	-607.0	NM_019713	56289.0	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	64.5	120.5	137.0	54.5	111.5	140.0
Merged-chr17-43667228-4	chr17	43666719	43667719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018887)	promoter-TSS (NM_018887)	-5.0	NM_001357123	74011.0	Mm.288697	NM_028711	ENSMUSG00000023912	Slc25a27	3632410G24Rik|9430092A03Rik|D530043E16Rik|Ucp4	solute carrier family 25, member 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29461438-4	chr19	29460924	29461924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	MTC|LTR|ERVL-MaLR	50505.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74830833-4	chr11	74830318	74831318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010813)	promoter-TSS (NM_010813)	-106.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132621712-2	chr7	132621212	132622212	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 1 of 6)	intron (NM_029609, intron 1 of 6)	11069.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21716012-2	chr9	21715512	21716512	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-7564.0	NM_001252658	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-82374674-4	chr8	82374155	82375155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008357, intron 2 of 7)	intron (NM_008357, intron 2 of 7)	27931.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	46.0	66.5	74.0	47.0	87.0	61.0
Merged-chr5-150600373-2	chr5	150599873	150600873	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001362416, exon 8 of 8)	3' UTR (NM_001362416, exon 8 of 8)	-5848.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123715837-2	chr5	123715331	123716331	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027494, intron 3 of 13)	intron (NM_027494, intron 3 of 13)	5213.0	NM_027494	70650.0	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	1.0	10.5	5.5	1.0	8.0	8.0
Merged-chr15-34443358-4	chr15	34442867	34443867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028101)	promoter-TSS (NR_028101)	-91.0	NM_001163485	19946.0	Mm.358632	NM_009083	ENSMUSG00000058600	Rpl30	-	ribosomal protein L30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58983090-1	chr11	58982590	58983590	+	1000.0	f1_c57bl6.idr	intron (NM_053168, intron 3 of 5)	intron (NM_053168, intron 3 of 5)	4997.0	NM_053168	94091.0	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	3.5	2.0	11.0	0.0	0.0	1.5
Merged-chr11-115139044-4	chr11	115138560	115139560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163753, intron 1 of 8)	MLT1H|LTR|ERVL-MaLR	-5068.0	NM_145634	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75588807-2	chr11	75588307	75589307	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008850, intron 1 of 11)	intron (NM_008850, intron 1 of 11)	728.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	33.5	144.5	73.5	37.0	137.0	67.5
Merged-chr18-46526036-4	chr18	46525520	46526520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173423)	promoter-TSS (NM_173423)	-49.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40781394-4	chr9	40780905	40781905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 6 of 6)	intron (NM_133733, intron 6 of 6)	-19868.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	178.0	456.5	252.5	105.5	311.5	156.5
Merged-chr6-3201482-4	chr6	3200978	3201978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	SSU-rRNA_Hsa|rRNA|rRNA	-87041.0	NR_036696	667335.0	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102070651-4	chr5	102070141	102071141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172882)	promoter-TSS (NM_172882)	-720.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170934595-4	chr1	170934098	170935098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7015.0	NM_001160215	98752.0	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-189921906-1	chr1	189921406	189922406	+	1000.0	f1_balb.idr	intron (NM_026796, intron 1 of 11)	CpG	385.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	0.0	0.0	4.0	0.0	2.0	2.0
Merged-chr13-21779449-4	chr13	21778938	21779938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_020034)	TTS (NM_020034)	1187.0	NM_020034	56702.0	Mm.221314	NM_020034	ENSMUSG00000058773	Hist1h1b	H1.5|H1B|H1f5|H1s-3	histone cluster 1, H1b	protein-coding	5.5	43.0	18.5	2.5	44.5	29.0
Merged-chr11-4986857-4	chr11	4986365	4987365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007454)	promoter-TSS (NM_007454)	41.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	7.0	26.5	21.5	10.5	23.0	31.5
Merged-chr4-45890259-4	chr4	45889754	45890754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198660)	promoter-TSS (NM_198660)	-49.0	NM_198660	381522.0	Mm.54220	NM_198660	ENSMUSG00000035539	Ccdc180	E230008N13Rik|Gm1025	coiled-coil domain containing 180	protein-coding	9.5	6.0	7.5	8.0	24.5	13.5
Merged-chr16-8829895-4	chr16	8829390	8830390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081400)	promoter-TSS (NM_001081400)	-210.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-43282726-4	chr15	43282226	43283226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008388)	promoter-TSS (NM_008388)	10.0	NM_008388	16341.0	Mm.289992	NM_008388	ENSMUSG00000022336	Eif3e	48kDa|Eif3s6|Int6|eIF3-p46|eIF3-p48	eukaryotic translation initiation factor 3, subunit E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99345491-4	chr5	99344940	99345940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-92513.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150799680-4	chr4	150799164	150800164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54132.0	NM_001356323	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99033665-4	chr15	99033150	99034150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009448, intron 1 of 3)	(T)n|Simple_repeat|Simple_repeat	3759.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117892019-4	chr4	117891502	117892502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026344)	promoter-TSS (NM_026344)	1.0	NM_026344	67728.0	Mm.13823	NM_026344	ENSMUSG00000028540	Dph2	9130020C19Rik|AI467389|Dph2l2	DPH2 homolog	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr4-147922365-4	chr4	147921873	147922873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011122, intron 10 of 18)	MER58B|DNA|hAT-Charlie	14403.0	NM_011122	18822.0	Mm.23951	NM_011122	ENSMUSG00000019055	Plod1	2410042F05Rik|AI854890|AV007929|Lh1|Plod	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55973764-4	chr16	55973273	55974273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173026)	promoter-TSS (NM_173026)	-31.0	NM_173026	271377.0	Mm.282814	NM_173026	ENSMUSG00000022601	Zbtb11	9230110G02Rik|ZNF-U69274	zinc finger and BTB domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-85333258-8	chr6	85332719	85333719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178639, intron 1 of 13)	CpG	203.0	NM_178639	94282.0	Mm.121485	NM_178639	ENSMUSG00000033720	Sfxn5	C230001H08Rik	sideroflexin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-98034048-2	chr5	98033548	98034548	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3086.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	0.0	19.0	3.0	2.5	2.0	3.5
Merged-chr19-55741745-4	chr19	55741250	55742250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331147)	promoter-TSS (NM_001331147)	-60.0	NM_001331147	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	4.0	22.5	5.5	1.0	27.0	6.5
Merged-chr14-104005442-4	chr14	104004922	104005922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045953, intron 1 of 2)	intron (NR_045953, intron 1 of 2)	21720.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79225089-4	chr11	79224600	79225600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17924.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-4086938-4	chr6	4086455	4087455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009748)	promoter-TSS (NM_009748)	-25.0	NM_009748	12068.0	Mm.286457	NM_009748	ENSMUSG00000032757	Bet1	AW555236|Bet-1	Bet1 golgi vesicular membrane trafficking protein	protein-coding	38.5	61.0	45.0	33.5	57.5	33.0
Merged-chr8-95853505-4	chr8	95853009	95854009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172758)	promoter-TSS (NM_172758)	-18.0	NM_172758	234595.0	Mm.29267	NM_172758	ENSMUSG00000036534	Slc38a7	D430050E18	solute carrier family 38, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132008846-4	chr4	132008359	132009359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	B3A|SINE|B2	40219.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4839390-4	chr19	4838891	4839891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207268)	promoter-TSS (NM_207268)	25.0	NM_207268	399599.0	Mm.444704	NM_207268	ENSMUSG00000067872	Ccdc87	4931419P11Rik	coiled-coil domain containing 87	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117295022-4	chr8	117294520	117295520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	MTE2b|LTR|ERVL-MaLR	38001.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23924832-4	chr17	23924340	23925340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	7382.0	NM_001077633	620253.0	Mm.390964	NM_001077633	ENSMUSG00000057417	Dcpp3	Dcpp-3|EG620253|SPT-3	demilune cell and parotid protein 3	protein-coding	49.5	87.5	42.5	57.5	69.5	32.0
Merged-chr16-55822011-7	chr16	55821439	55822439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159394, exon 1 of 12)	exon (NM_001159394, exon 1 of 12)	199.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-23257121-4	chr8	23256646	23257646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042484)	promoter-TSS (NM_001042484)	-66.0	NM_001042484	57437.0	Mm.196269	NM_020585	ENSMUSG00000015341	Golga7	AB041568|C130038N16Rik|GCP16|GOLGA3AP1|HSPC041|R75586	golgi autoantigen, golgin subfamily a, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115631161-4	chr11	115630662	115631662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2867.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118549799-4	chr2	118549304	118550304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138313)	promoter-TSS (NM_138313)	-118.0	NM_138313	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	28.0	66.0	48.0	21.0	81.5	49.5
Merged-chr9-40814228-4	chr9	40813721	40814721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12948.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	79.0	227.0	132.0	14.5	47.0	42.5
Merged-chr5-117133583-4	chr5	117133103	117134103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183306)	promoter-TSS (NM_183306)	15.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	48.5	101.5	126.5	82.5	117.0	103.5
Merged-chr10-88826806-4	chr10	88826302	88827302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175158)	promoter-TSS (NM_175158)	12.0	NM_175158	70683.0	Mm.29631	NM_175158	ENSMUSG00000004356	Utp20	3830408P06Rik|AA617408|Drim|mDRIM|mDRIN	UTP20 small subunit processome component	protein-coding	5.0	11.5	4.0	0.0	8.0	2.5
Merged-chr5-32192241-4	chr5	32191750	32192750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40458.0	NM_030072	665270.0	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134853972-4	chr4	134853464	134854464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355501)	promoter-TSS (NM_001355501)	-619.0	NM_025382	66146.0	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61|Maco1	transmembrane protein 57	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60398620-4	chr10	60398122	60399122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 28 of 68)	intron (NM_001252635, intron 28 of 68)	-1104.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86690392-4	chr4	86689895	86690895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20336.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	28.0	69.0	72.0	36.0	79.5	47.0
Merged-chr6-32718078-4	chr6	32717575	32718575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-129883.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64616430-4	chr17	64615933	64616933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	14784.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25359007-2	chr2	25358509	25359509	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2677.0	NM_031843	83768.0	Mm.21440	NM_031843	ENSMUSG00000026958	Dpp7	DPPII|Dpp2|QPP	dipeptidylpeptidase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17383162-4	chr10	17382653	17383653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-287371.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182935599-4	chr1	182935100	182936100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19188.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-61363797-4	chr3	61363306	61364306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028712)	promoter-TSS (NM_028712)	-701.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45459458-4	chr7	45458958	45459958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010240, intron 1 of 3)	intron (NM_010240, intron 1 of 3)	428.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	50.0	50.5	41.5	49.0	74.5	39.0
Merged-chr18-5603683-4	chr18	5603178	5604178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360981, intron 2 of 8)	intron (NM_001360981, intron 2 of 8)	11031.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	0.0	3.5	3.0	0.0	1.0	1.0
Merged-chr5-92353757-4	chr5	92353273	92354273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-4884.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	62.0	135.0	94.0	46.5	138.0	81.0
Merged-chr4-133118307-4	chr4	133117811	133118811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12322.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	35.5	53.5	30.0	14.5	66.0	42.0
Merged-chr1-36307705-4	chr1	36307186	36308186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033310)	promoter-TSS (NR_033310)	-47.0	NM_001172206	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-69156809-4	chr17	69156352	69157352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013813, exon 1 of 22)	5' UTR (NM_013813, exon 1 of 22)	108.0	NM_013813	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-24487076-4	chr14	24486584	24487584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081247)	promoter-TSS (NM_001081247)	-26.0	NM_001081247	218832.0	Mm.343610	NM_183157	ENSMUSG00000025280	Polr3a	9330175N20Rik|BC053071|RPC1|RPC155	polymerase (RNA) III (DNA directed) polypeptide A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27324699-2	chr2	27324199	27325199	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 2 of 29)	intron (NR_133905, intron 2 of 29)	-77396.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100663200-4	chr5	100662709	100663709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027978, intron 3 of 6)	intron (NM_027978, intron 3 of 6)	11047.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	14.0	39.0	23.5	18.5	23.5	17.0
Merged-chr5-25529778-4	chr5	25529262	25530262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027388)	promoter-TSS (NR_027388)	-256.0	NR_027388	73571.0	Mm.105263	NR_027388	ENSMUSG00000101856	1700096K18Rik	-	RIKEN cDNA 1700096K18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100401049-4	chr11	100400569	100401569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132425, intron 1 of 3)	intron (NR_132425, intron 1 of 3)	2953.0	NR_132425	102635937.0	Mm.421398	NR_132425		Gm12348	-	predicted gene 12348	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31170486-4	chr2	31170002	31171002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178760, intron 4 of 17)	intron (NM_178760, intron 4 of 17)	18186.0	NM_178760	277463.0	Mm.236074	NM_178760	ENSMUSG00000000194	Gpr107	9930033D15Rik|AI790205|C530034M11|mKIAA1624	G protein-coupled receptor 107	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-17061223-2	chr7	17060723	17061723	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162950, intron 1 of 14)	intron (NM_001162950, intron 1 of 14)	1204.0	NM_001162950	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	0.0	7.0	0.0	0.0	0.0	0.0
Merged-chr5-112326776-3	chr5	112326267	112327267	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018783, intron 1 of 13)	intron (NM_018783, intron 1 of 13)	398.0	NM_018783	54723.0	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	53.0	104.5	67.0	29.5	61.5	74.0
Merged-chr1-133129381-4	chr1	133128880	133129880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1786.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	59.0	117.5	81.0	32.5	131.5	118.0
Merged-chr17-35258289-5	chr17	35257712	35258712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4882.0	NM_010380	14964.0	Mm.439675	NM_010380	ENSMUSG00000073411	H2-D1	H-2D|H2-D	histocompatibility 2, D region locus 1	protein-coding	344.5	711.0	582.5	299.5	548.0	579.5
Merged-chr7-19272247-4	chr7	19271781	19272781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282021)	promoter-TSS (NM_001282021)	-427.0	NM_001282022	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-46443311-4	chr2	46442811	46443811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	746706.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88259244-3	chr1	88258743	88259743	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_198652, exon 8 of 8)	3' UTR (NM_198652, exon 8 of 8)	10165.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-10557495-4	chr10	10556981	10557981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026405, intron 1 of 2)	URR1B|DNA|hAT-Charlie	726.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-127610966-4	chr5	127610454	127611454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133895, intron 1 of 7)	intron (NM_133895, intron 1 of 7)	6438.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82987468-2	chr15	82986968	82987968	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-28172.0	NR_037241	100526477.0		NR_037241	ENSMUSG00000092751	Mir3080	mmu-mir-3080	microRNA 3080	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3124032-4	chr11	3123553	3124553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003517)	promoter-TSS (NR_003517)	32.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118850652-2	chr7	118850152	118851152	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001168220, exon 3 of 5)	exon (NM_001168220, exon 3 of 5)	4961.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8923701-4	chr3	8923210	8924210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025434, exon 1 of 3)	exon (NM_025434, exon 1 of 3)	147.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17900131-2	chr17	17899629	17900629	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12305.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	3.0	11.0	14.0	5.0	10.0	20.5
Merged-chr2-10288637-2	chr2	10288137	10289137	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81814.0	NM_001198808	353282.0	Mm.329991	NM_177386	ENSMUSG00000061186	Sfmbt2	D2Wsu23e|D330030P06Rik	Scm-like with four mbt domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-6416139-2	chr1	6415639	6416639	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_B|LTR|ERVK	56808.0	NM_001195732	620393.0	Mm.388992	NM_001195732	ENSMUSG00000087247	Alkal1	EG620393|Fam150a	ALK and LTK ligand 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-47617146-2	chr10	47616646	47617646	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1372397.0	NR_028276	108637.0		NR_028276	ENSMUSG00000096263	Snord14c	Gm23107|Rnu14|U14	small nucleolar RNA, C/D box 14C	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118117690-4	chr7	118117188	118118188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-1541.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	7.0	7.0	18.5	6.5	5.0	3.5
Merged-chr1-151270829-4	chr1	151270317	151271317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-73669.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-75180432-4	chr1	75179909	75180909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023732)	promoter-TSS (NM_023732)	-17.0	NM_023732	74104.0	Mm.28663	NM_023732	ENSMUSG00000026198	Abcb6	1200005B17Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88200697-4	chr10	88200177	88201177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027487)	promoter-TSS (NM_027487)	-420.0	NM_026070	67282.0	Mm.208465	NM_026070	ENSMUSG00000020056	Washc3	2900091E11Rik|5730495F03Rik|Ccdc53	WASH complex subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24540909-4	chr5	24540403	24541403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310476)	promoter-TSS (NM_001310476)	75.0	NM_001310476	117590.0	Mm.207071	NM_080444	ENSMUSG00000038204	Asb10	Asb-10|BB137407	ankyrin repeat and SOCS box-containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23675504-2	chr17	23675004	23676004	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013749)	TTS (NM_013749)	-1627.0	NM_001357380	386612.0	Mm.328831	NM_001008425	ENSMUSG00000041319	Thoc6	F830014G06Rik|Wdr58	THO complex 6	protein-coding	0.0	8.5	1.5	0.5	1.5	1.5
Merged-chr7-67422026-4	chr7	67421527	67422527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49169.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	1.0	5.0	1.5	4.0	2.5	5.5
Merged-chr12-25143660-4	chr12	25143148	25144148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14474.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	70.0	143.5	86.5	87.5	171.0	90.5
Merged-chr9-116084852-4	chr9	116084338	116085338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	90525.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	55.5	56.5	58.5	67.5	91.0	54.0
Merged-chr1-37486623-4	chr1	37486099	37487099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_024017, exon 1 of 1)	non-coding (NR_024017, exon 1 of 1)	2006.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-144892724-4	chr4	144892219	144893219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172424)	promoter-TSS (NM_001172424)	-108.0	NM_001172424	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102999318-2	chr2	102998818	102999818	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74195.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	7.0	3.0	4.0	16.5	5.5	2.0
Merged-chr6-84752030-2	chr6	84751530	84752530	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 19 of 21)	intron (NM_177077, intron 19 of 21)	-158122.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-5360061-4	chr5	5359573	5360573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	20178.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	43.5	117.5	65.5	56.0	71.0	44.5
Merged-chr9-95540652-4	chr9	95540172	95541172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19145.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100867049-2	chr7	100866549	100867549	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER2|DNA|TcMar-Tigger	-3636.0	NM_177073	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-131410580-4	chr7	131410080	131411080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025826)	promoter-TSS (NM_025826)	-21.0	NM_025826	66885.0	Mm.334274	NM_025826	ENSMUSG00000030861	Acadsb	1300003O09Rik|2-MEBCAD|BB066609|SBCAD	acyl-Coenzyme A dehydrogenase, short/branched chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116592598-4	chr11	116592087	116593087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1100.0	NR_033223	11298.0	Mm.42233	NM_009591	ENSMUSG00000020804	Aanat	AA-NAT|Nat-2|Nat4|Snat	arylalkylamine N-acetyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114453388-4	chr7	114452886	114453886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011055, intron 1 of 15)	intron (NM_011055, intron 1 of 15)	38132.0	NM_011055	18576.0	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	19.5	32.0	28.5	4.5	38.0	11.0
Merged-chr3-100692481-4	chr3	100691973	100692973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7000.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	3.0	12.5	9.0	6.5	13.0	6.0
Merged-chr1-37314537-3	chr1	37314035	37315035	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	14697.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-121449191-4	chr2	121448710	121449710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011354)	promoter-TSS (NM_011354)	12.0	NR_110986	378702.0	Mm.262252	NM_011354	ENSMUSG00000074884	Serf2	C80083|Msmac1l|m4F5rel	small EDRK-rich factor 2	protein-coding	170.0	412.5	317.0	180.5	450.5	304.0
Merged-chr6-120531332-4	chr6	120530826	120531826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144815)	promoter-TSS (NM_144815)	-27.0	NM_144815	214932.0	Mm.255322	NM_144815	ENSMUSG00000058979	Hdhd5	A930002G03Rik|Cecr5	haloacid dehalogenase like hydrolase domain containing 5	protein-coding	0.0	0.0	8.5	3.5	9.5	1.0
Merged-chr11-85792630-3	chr11	85792127	85793127	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_077059, exon 5 of 5)	non-coding (NR_077059, exon 5 of 5)	-16947.0	NR_046194	78420.0	Mm.488197	NR_046194	ENSMUSG00000085514	Bcas3os2	9530048J24Rik	breast carcinoma amplified sequence 3 opposite strand 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17788078-4	chr10	17787558	17788558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8161.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	70.5	98.0	55.0	4.0	32.5	16.0
Merged-chr7-101011986-4	chr7	101011429	101012429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008773)	promoter-TSS (NM_008773)	69.0	NM_001302347	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	0.0	0.0	0.0	1.5	3.5	4.0
Merged-chr2-25365652-4	chr2	25365163	25366163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033293)	promoter-TSS (NM_001033293)	0.0	NR_149315	227620.0	Mm.33797	NM_001033293	ENSMUSG00000026956	Uap1l1	5730445F03Rik	UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113741631-4	chr6	113741130	113742130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024206)	promoter-TSS (NM_024206)	-949.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-28096615-2	chr3	28096115	28097115	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 19 of 25)	intron (NM_008875, intron 19 of 25)	112444.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143235153-4	chr5	143234659	143235659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289590)	promoter-TSS (NM_001289590)	-4.0	NM_001289589	231866.0	Mm.55211	NM_177681	ENSMUSG00000029587	Zfp12	C530015C18|Krox-7|Zfp-12|Znf12	zinc finger protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-88445645-4	chr12	88445158	88446158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361598, intron 5 of 9)	intron (NM_001361598, intron 5 of 9)	-68335.0	NR_045888	71818.0	Mm.490789	NR_045888	ENSMUSG00000113434	3200001D21Rik	-	RIKEN cDNA 3200001D21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122391863-4	chr5	122391360	122392360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019824)	promoter-TSS (NM_019824)	-18.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-65165188-4	chr6	65164690	65165690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20460.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11477929-4	chr8	11477438	11478438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126558)	promoter-TSS (NR_126558)	9.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-47272250-4	chr4	47271761	47272761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 14 of 39)	intron (NM_009928, intron 14 of 39)	64249.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83456627-4	chr6	83456161	83457161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347313)	promoter-TSS (NM_001347313)	-269.0	NM_001347313	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84285312-4	chr12	84284800	84285800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029880)	promoter-TSS (NM_029880)	4.0	NM_001252626	77219.0	Mm.246127	NM_029880	ENSMUSG00000072946	Ptgr2	1810016I24Rik|9130222H03Rik|9630002F03Rik|AI838763|B830026H24Rik|PGR-2|PRG-2|Zadh1	prostaglandin reductase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35919127-4	chr17	35918674	35919674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357740)	promoter-TSS (NM_001357740)	-98.0	NM_001357740	52040.0	Mm.29385	NM_175934	ENSMUSG00000039220	Ppp1r10	2610025H06Rik|Cat53|D17Ertd808e|Fb19|Pnuts	protein phosphatase 1, regulatory subunit 10	protein-coding	9.0	25.0	11.0	5.0	21.5	17.5
Merged-chr8-66440161-4	chr8	66439651	66440651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 6 of 7)	intron (NM_175188, intron 6 of 7)	46379.0	NM_025465	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-47352425-2	chr4	47351925	47352925	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009370)	promoter-TSS (NM_009370)	-797.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37595379-4	chr13	37594852	37595852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-230686.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	184.5	392.5	314.5	180.0	340.0	271.0
Merged-chr8-126598478-4	chr8	126597974	126598974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5038.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	2.0	3.5	11.0	0.0	13.5	6.0
Merged-chr11-43682556-4	chr11	43682080	43683080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001164231, exon 1 of 4)	exon (NM_001164231, exon 1 of 4)	582.0	NM_001164231	70802.0	Mm.397449	NM_027557	ENSMUSG00000044950	Pwwp2a	4631424J17Rik|AI891583|AU024105|D930040F23Rik	PWWP domain containing 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-108459879-4	chr4	108459374	108460374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175472, intron 1 of 30)	CpG	448.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140207307-4	chr5	140206865	140207865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152617, intron 10 of 16)	intron (NR_152617, intron 10 of 16)	-32447.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129065964-4	chr2	129065454	129066454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027192)	promoter-TSS (NM_027192)	7.0	NM_027192	69737.0	Mm.33909	NM_027192	ENSMUSG00000027394	Ttl	2410003M22Rik|2700049H19Rik|AI848570	tubulin tyrosine ligase	protein-coding	2.5	5.0	3.5	3.5	8.0	0.0
Merged-chr12-99616372-4	chr12	99615891	99616891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136760, intron 2 of 3)	MLTR14|LTR|ERV1	11583.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59656781-4	chr13	59656267	59657267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035122, intron 3 of 9)	RMER15|LTR|ERVL	19017.0	NM_001035122	105348.0	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	0.0	0.0	6.0	0.0	0.0	0.0
Merged-chr7-123371626-4	chr7	123371125	123372125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1710.0	NM_001316713	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23967207-4	chr17	23966715	23967715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8015.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	38.0	162.0	117.0	34.0	158.0	93.0
Merged-chr10-81172701-2	chr10	81172201	81173201	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3930.0	NM_007907	13629.0	Mm.2903	NM_007907	ENSMUSG00000034994	Eef2	Ef-2	eukaryotic translation elongation factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45150521-4	chr7	45150015	45151015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145954, intron 1 of 16)	intron (NM_145954, intron 1 of 16)	-3788.0	NM_029406	68845.0	Mm.181689	NM_029406	ENSMUSG00000003423	Pih1d1	1110061L23Rik|4933413A04Rik|Nop17	PIH1 domain containing 1	protein-coding	17.5	26.0	40.5	19.5	45.0	27.5
Merged-chr17-17005094-4	chr17	17004623	17005623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58980.0	NM_001005358	449000.0	Mm.483718	NM_001005358	ENSMUSG00000096696	Zfp960	-	zinc finger protein 960	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60932073-5	chr10	60931656	60932656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033616, intron 1 of 2)	intron (NR_033616, intron 1 of 2)	5976.0	NR_033616	73616.0	Mm.159038	NR_033616	ENSMUSG00000037247	Pldi	1700125F08Rik|Poldi	polymorphic derived intron containing	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122738462-4	chr2	122737922	122738922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019788)	promoter-TSS (NM_019788)	-83.0	NM_019788	18457.0	Mm.268921	NM_019788	ENSMUSG00000005804	Bloc1s6	BLOC-1|Pldn|Stx13bp1|pa	biogenesis of lysosomal organelles complex-1, subunit 6, pallidin	protein-coding	212.0	392.0	350.0	261.0	503.5	437.5
Merged-chr9-124279654-4	chr9	124279017	124280017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33177.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108293611-2	chr9	108293111	108294111	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025449, intron 2 of 5)	intron (NM_025449, intron 2 of 5)	3154.0	NM_025449	66257.0	Mm.10407	NM_025449	ENSMUSG00000032606	Nicn1	1500032A17Rik	nicolin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84884800-2	chr12	84884300	84885300	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8305.0	NM_013589	16997.0	Mm.3900	NM_013589	ENSMUSG00000002020	Ltbp2	AW208642	latent transforming growth factor beta binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122932624-4	chr8	122932105	122933105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	84231.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	14.5	35.5	11.0	2.5	8.5	25.5
Merged-chr2-166448510-3	chr2	166447989	166448989	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015558, exon 1 of 3)	non-coding (NR_015558, exon 1 of 3)	1038.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95819457-4	chr3	95818962	95819962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081293)	promoter-TSS (NM_001081293)	-509.0	NM_001081293	75137.0	Mm.196275	NM_028328	ENSMUSG00000028106	Rprd2	2810036A19Rik|4930535B03Rik|6720469I21Rik|AL022841|AL022940|AU021304|BB077382|mKIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-82865382-2	chr7	82864882	82865882	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1951.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-75458356-4	chr1	75457849	75458849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183022, intron 1 of 9)	intron (NM_183022, intron 1 of 9)	7839.0	NM_183022	241118.0	Mm.110790	NM_183022	ENSMUSG00000033007	Asic4	Accn4|BNAC4	acid-sensing (proton-gated) ion channel family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79545659-2	chr15	79545159	79546159	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040187, intron 1 of 12)	PB1D10|SINE|Alu	900.0	NM_199079	67040.0	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	51.5	83.0	72.5	57.5	81.5	74.5
Merged-chr13-107919766-4	chr13	107919259	107920259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29695.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-42436169-4	chr17	42435669	42436669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355270, intron 2 of 2)	intron (NM_001355270, intron 2 of 2)	119569.0	NM_001355270	627626.0	Mm.390999	NM_028474	ENSMUSG00000042256	Ptchd4	3110082D06Rik|Gm321	patched domain containing 4	protein-coding	4.5	25.0	19.5	4.5	13.5	27.5
Merged-chr13-23887534-4	chr13	23887033	23888033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_121611, intron 10 of 12)	intron (NR_121611, intron 10 of 12)	17260.0	NM_001170638	20504.0	Mm.2656	NM_009198	ENSMUSG00000021335	Slc17a1	NAPI-1|Napi1|Npt1	solute carrier family 17 (sodium phosphate), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83709742-4	chr17	83709271	83710271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 2 of 16)	intron (NM_054082, intron 2 of 16)	3608.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-57735958-4	chr3	57735446	57736446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304456)	promoter-TSS (NM_001304456)	-111.0	NM_011883	24017.0	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5955743-4	chr11	5955263	5956263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019661)	promoter-TSS (NM_019661)	5.0	NM_019661	56418.0	Mm.294821	NM_019661	ENSMUSG00000002741	Ykt6	0610042I15Rik|1810013M05Rik|AW105923	YKT6 v-SNARE homolog (S. cerevisiae)	protein-coding	105.5	191.0	165.0	72.5	165.0	170.0
Merged-chr1-156066298-3	chr1	156065794	156066794	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001358627, exon 6 of 6)	3' UTR (NM_001358627, exon 6 of 6)	25433.0	NM_022329	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	96.5	140.0	130.5	1.5	11.0	12.0
Merged-chr10-59262301-2	chr10	59261801	59262801	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	40379.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90197533-4	chr16	90197019	90198019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23223.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72391300-4	chr6	72390790	72391790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016794)	promoter-TSS (NM_016794)	-623.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-81665123-4	chr17	81664615	81665615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	73272.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21052517-4	chr14	21051975	21052975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134079)	promoter-TSS (NM_134079)	-33.0	NM_018829	55946.0	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	1.5	1.0	0.5	1.5	7.0	3.0
Merged-chr7-80831681-4	chr7	80831188	80832188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19-int|LTR|ERVK	-28357.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	37.5	98.5	88.5	32.0	107.0	57.0
Merged-chr6-145303091-4	chr6	145302588	145303588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52536.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	43.5	154.5	135.5	37.5	139.0	71.5
Merged-chr6-57790734-4	chr6	57790227	57791227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 1 of 4)	intron (NM_146168, intron 1 of 4)	34398.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116494832-4	chr7	116494361	116495361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9508.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57331152-4	chr17	57330626	57331626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-27560.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11730291-4	chr11	11729793	11730793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301865, intron 3 of 6)	intron (NM_001301865, intron 3 of 6)	40116.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88826256-4	chr6	88825741	88826741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011844, exon 8 of 8)	3' UTR (NM_011844, exon 8 of 8)	15694.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85432440-2	chr8	85431940	85432940	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025722, intron 1 of 3)	CpG	401.0	NR_033144	66714.0	Mm.272748	NM_025722	ENSMUSG00000036934	4921524J17Rik	-	RIKEN cDNA 4921524J17 gene	protein-coding	3.0	12.0	3.5	5.0	17.5	6.5
Merged-chr15-59821394-2	chr15	59820872	59821872	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26413.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	1.0	2.0	1.0	0.0	0.0	2.0
Merged-chr5-115341256-4	chr5	115340760	115341760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026933)	promoter-TSS (NM_026933)	13.0	NM_026933	69076.0	Mm.27951	NM_026933	ENSMUSG00000029535	Triap1	1810015M01Rik|AU020874|AU043831|P53csv|Wf-1	TP53 regulated inhibitor of apoptosis 1	protein-coding	3.0	8.5	15.5	3.5	8.0	4.5
Merged-chr8-126979746-4	chr8	126979236	126980236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151744)	promoter-TSS (NR_151744)	-298.0	NR_151744	629746.0	Mm.264954	NR_151744		Gm29688	-	predicted gene, 29688	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-24680098-2	chr1	24679598	24680598	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310483, intron 1 of 15)	intron (NM_001310483, intron 1 of 15)	1180.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105393965-4	chr8	105393460	105394460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301173, intron 4 of 15)	intron (NM_001301173, intron 4 of 15)	18579.0	NM_001081333	102075.0	Mm.32034	NM_175321	ENSMUSG00000014782	Plekhg4	4931414L13Rik|AI448583|mFLJ00068	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-125127930-4	chr4	125127425	125128425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153159)	promoter-TSS (NM_153159)	-44.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91023506-2	chr1	91023006	91024006	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	24779.0	NM_001111312	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89202885-4	chr3	89202380	89203380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008094)	promoter-TSS (NM_008094)	-45.0	NM_001077411	14466.0	Mm.5031	NM_008094	ENSMUSG00000028048	Gba	GBA1|GC|GCase|GLUC|betaGC	glucosidase, beta, acid	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-83839622-4	chr3	83839130	83840130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011905, intron 2 of 2)	RSINE1|SINE|B4	1978.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9424693-4	chr13	9424196	9425196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	MTA_Mm|LTR|ERVL-MaLR	148171.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59839377-4	chr11	59838878	59839878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011991, intron 1 of 11)	CpG	389.0	NM_011991	26572.0	Mm.40	NM_011991	ENSMUSG00000019373	Cops3	Csn3|Sgn3	COP9 signalosome subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41346653-4	chr19	41346151	41347151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	38419.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-72379608-4	chr2	72379108	72380108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 8 of 19)	intron (NM_023057, intron 8 of 19)	93907.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23432738-4	chr13	23432229	23433229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1712.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40258161-4	chr10	40257662	40258662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026113)	promoter-TSS (NM_026113)	-450.0	NM_001359492	67371.0	Mm.64104	NM_026113	ENSMUSG00000019837	Gtf3c6	2410016F19Rik|AU019813	general transcription factor IIIC, polypeptide 6, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-94221925-3	chr6	94221411	94222411	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130996, intron 1 of 1)	URR1B|DNA|hAT-Charlie	15531.0	NR_130996	78178.0	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70766871-4	chr8	70766349	70767349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023065)	promoter-TSS (NM_023065)	-186.0	NM_023065	65972.0	Mm.30241	NM_023065		Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	158.5	443.5	247.5	134.5	365.5	208.5
Merged-chr9-74976125-4	chr9	74975629	74976629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153584)	promoter-TSS (NM_153584)	18.0	NM_153584	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	2.0	9.5	3.0	3.5	8.5	1.0
Merged-chr16-96083069-2	chr16	96082557	96083557	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_176928)	promoter-TSS (NM_176928)	-629.0	NM_145125	93871.0	Mm.240871	NM_145125	ENSMUSG00000022914	Brwd1	5330419I02Rik|D530019K20Rik|G1-403-16|Wdr9|repro5	bromodomain and WD repeat domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55499222-4	chr12	55498690	55499690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6543.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110706994-4	chr9	110706497	110707497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 2 of 6)	intron (NM_028312, intron 2 of 6)	35613.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150832797-2	chr2	150832297	150833297	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151505, exon 13 of 13)	non-coding (NR_151505, exon 13 of 13)	9773.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117611211-2	chr11	117610711	117611711	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015489)	promoter-TSS (NR_015489)	-36.0	NR_015489	78403.0	Mm.212543	NR_015489		2900041M22Rik	-	RIKEN cDNA 2900041M22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83141043-4	chr8	83140531	83141531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24321.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	83.5	177.5	166.5	208.0	316.5	216.5
Merged-chr1-135534923-4	chr1	135534414	135535414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173437, intron 2 of 28)	intron (NM_173437, intron 2 of 28)	50441.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28347947-4	chr7	28347441	28348441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2748.0	NM_013647	20055.0	Mm.702	NM_013647	ENSMUSG00000037563	Rps16	AA420385|AI317031	ribosomal protein S16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122261855-2	chr14	122261355	122262355	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029556, intron 1 of 7)	ID_B1|SINE|B4	-28217.0	NR_015532	68245.0	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130913292-4	chr4	130912790	130913790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010686)	promoter-TSS (NM_010686)	-44.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53126939-4	chr4	53126434	53127434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	32961.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46163152-4	chr17	46162689	46163689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357745, intron 1 of 11)	intron (NM_001357745, intron 1 of 11)	1125.0	NM_001357745	56055.0	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150608572-4	chr2	150608075	150609075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027977)	promoter-TSS (NM_027977)	-8.0	NM_001356492	71881.0	Mm.26599	NM_027977	ENSMUSG00000033096	Apmap	2310001A20Rik|AI314817	adipocyte plasma membrane associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-85859628-4	chr15	85859124	85860124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168672)	promoter-TSS (NM_001168672)	-83.0	NM_001168672	29870.0	Mm.20858	NM_013882	ENSMUSG00000022385	Gtse1	B99|Gtse-1	G two S phase expressed protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3621418-4	chr8	3620914	3621914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026156)	promoter-TSS (NM_026156)	-118.0	NM_026156	67439.0	Mm.23739	NM_026156	ENSMUSG00000019470	Xab2	0610041O14Rik|AV025587	XPA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-33050553-4	chr12	33050058	33051058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024478, intron 11 of 19)	LTR53B|LTR|ERVL	42317.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	2.5	0.0	2.5	10.0	0.0	1.0
Merged-chr11-101543294-2	chr11	101542794	101543794	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009764, intron 2 of 22)	intron (NM_009764, intron 2 of 22)	8661.0	NM_009764	12189.0	Mm.244975	NM_009764	ENSMUSG00000017146	Brca1	-	breast cancer 1, early onset	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67226165-4	chr10	67225666	67226666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001242396, exon 9 of 25)	exon (NM_001242396, exon 9 of 25)	40416.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71548041-2	chr2	71547541	71548541	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-1287.0	NM_010054	13392.0	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-49172094-4	chr14	49171568	49172568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027492)	promoter-TSS (NM_027492)	-178.0	NM_027492	70646.0	Mm.275688	NM_027492	ENSMUSG00000036282	Naa30	4930487N19Rik|5730533P17Rik|AI447922|AW322455|Nat12	N(alpha)-acetyltransferase 30, NatC catalytic subunit	protein-coding	10.5	25.0	13.5	2.0	8.5	7.5
Merged-chr6-82971275-4	chr6	82970784	82971784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 3 of 9)	intron (NM_033079, intron 3 of 9)	24362.0	NM_033079	110958.0	Mm.100652	NM_033079	ENSMUSG00000030041	M1ap	D6Mm5e	meiosis 1 associated protein	protein-coding	6.5	33.5	15.5	6.5	33.5	20.0
Merged-chr2-5379313-4	chr2	5378794	5379794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030601)	promoter-TSS (NR_030601)	-96.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6695432-4	chr11	6694928	6695928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	24609.0	NR_046025	626419.0	Mm.390334	NR_046025	ENSMUSG00000086808	Gm11981	-	predicted gene 11981	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55026863-1	chr1	55026363	55027363	+	1000.0	f1_c57bl6.idr	intron (NM_031179, intron 1 of 24)	intron (NM_031179, intron 1 of 24)	615.0	NM_031179	81898.0	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	187.5	540.5	332.0	164.5	428.5	273.5
Merged-chr9-21926483-2	chr9	21925983	21926983	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164614)	promoter-TSS (NM_001164614)	805.0	NM_001253869	235043.0	Mm.253329	NM_178577	ENSMUSG00000040883	Tmem205	-	transmembrane protein 205	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79223610-4	chr11	79223107	79224107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19417.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136690246-4	chr6	136689779	136690779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28386.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	79.0	190.5	123.5	30.0	91.5	90.5
Merged-chr2-32312433-4	chr2	32311927	32312927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010065, intron 19 of 20)	CpG-7982	-5838.0	NR_128563	104795665.0		NR_128563	ENSMUSG00000092765	Gm23363	Mir3154|mir-3154|mmu-mir-3154	predicted gene, 23363	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-143988924-4	chr1	143988401	143989401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	15248.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-62721551-4	chr1	62721053	62722053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	18236.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-59560120-4	chr16	59559641	59560641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4389.0	NM_174848	224273.0	Mm.246424	NM_174848	ENSMUSG00000022723	Crybg3	5031404N19|AU022790|Gm9581	beta-gamma crystallin domain containing 3	protein-coding	30.5	59.5	51.5	29.0	44.0	21.0
Merged-chr8-85142741-4	chr8	85142246	85143246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9178.0	NM_001037922	624855.0	Mm.390061	NM_001037922	ENSMUSG00000062687	Cks1brt	EG624855|Gm6531	CDC28 protein kinase 1b, retrogene	protein-coding	28.0	74.5	111.5	80.5	134.0	101.0
Merged-chr13-32338739-4	chr13	32338229	32339229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146041)	promoter-TSS (NM_146041)	-185.0	NM_146041	218138.0	Mm.247143	NM_146041	ENSMUSG00000038372	Gmds	BC031788|C87208	GDP-mannose 4, 6-dehydratase	protein-coding	26.0	86.5	46.0	27.5	37.5	77.0
Merged-chr12-3874347-4	chr12	3873844	3874844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 6 of 22)	intron (NM_007872, intron 6 of 22)	-12100.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-104441738-4	chr11	104441215	104442215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 2 of 14)	GA-rich|Low_complexity|Low_complexity	576.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54978842-4	chr18	54978339	54979339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	11341.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101965770-4	chr11	101965266	101966266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024449, intron 1 of 1)	intron (NM_024449, intron 1 of 1)	1249.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-50096762-4	chr18	50096241	50097241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31460.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	135.5	339.0	283.5	177.5	268.5	283.5
Merged-chr11-87031046-4	chr11	87030562	87031562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37300.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-12088000-4	chr4	12087512	12088512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177861)	promoter-TSS (NM_177861)	-5.0	NR_110955	329795.0	Mm.475125	NM_177861	ENSMUSG00000049488	Tmem67	5330408M12Rik|B230117O07|b2b1163.1Clo|b2b1291.1Clo	transmembrane protein 67	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80166923-4	chr7	80166443	80167443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19898.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	5.0	7.0	3.5	3.0	12.5	3.5
Merged-chr8-82940128-4	chr8	82939601	82940601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 1 of 6)	intron (NM_177378, intron 1 of 6)	76745.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	28.5	112.5	94.5	64.5	120.0	90.0
Merged-chr7-141455091-4	chr7	141454597	141455597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163689)	promoter-TSS (NM_001163689)	-91.0	NM_025802	66853.0	Mm.29998	NM_025802	ENSMUSG00000025509	Pnpla2	0610039C21Rik|1110001C14Rik|Atgl|TTS-2.2	patatin-like phospholipase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-61711688-4	chr2	61711223	61712223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021526)	promoter-TSS (NM_021526)	29.0	NM_021526	59029.0	Mm.218198	NM_021526	ENSMUSG00000026914	Psmd14	2610312C03Rik|3200001M20Rik|AA986732|Pad1|Poh1|rpm11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21055464-4	chr5	21054927	21055927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011203, intron 1 of 17)	CpG	484.0	NM_001356591	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25785277-4	chr8	25784749	25785749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026121)	promoter-TSS (NM_026121)	-40.0	NM_026121	67384.0	Mm.118400	NM_026121	ENSMUSG00000037316	Bag4	2410112I15Rik|SODD	BCL2-associated athanogene 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88826794-2	chr6	88826294	88827294	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011844, exon 8 of 8)	3' UTR (NM_011844, exon 8 of 8)	15141.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107542102-4	chr9	107541583	107542583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019720)	promoter-TSS (NM_019720)	110.0	NM_001357290	56368.0	Mm.24833	NM_019720	ENSMUSG00000037190	Cyb561d2	AW049681|Tsp10	cytochrome b-561 domain containing 2	protein-coding	13.5	55.0	37.5	9.0	55.5	45.5
Merged-chr10-13303353-2	chr10	13302853	13303853	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	20936.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	7.0	5.5	5.0	4.5	8.0	4.5
Merged-chr10-99443648-4	chr10	99443145	99444145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-165526.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28085131-4	chr17	28084626	28085626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4487.0	NM_001085555	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0.0	2.0	0.0	0.0	10.0	0.0
Merged-chr17-50504678-4	chr17	50504174	50505174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4873.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	12.0	57.5	5.0	6.0	20.5	23.0
Merged-chr14-73172703-4	chr14	73172187	73173187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134083, intron 10 of 14)	intron (NM_134083, intron 10 of 14)	29902.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122430419-4	chr8	122429921	122430921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301284, intron 1 of 4)	intron (NM_001301284, intron 1 of 4)	2519.0	NM_001301284	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111996069-4	chr10	111995572	111996572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028608, intron 1 of 5)	L1MA7|LINE|L1	1192.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65730123-4	chr17	65729626	65730626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	42626.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96765834-4	chr11	96765347	96766347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11708.0	NM_028965	74479.0	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	149.5	318.0	268.0	145.5	296.5	270.5
Merged-chr1-125466827-4	chr1	125466335	125467335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31108.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173737178-4	chr1	173736670	173737670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204910, intron 1 of 7)	ORR1E|LTR|ERVL-MaLR	4639.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	77.0	173.0	74.5	54.0	87.0	59.5
Merged-chr5-121584330-4	chr5	121583832	121584832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009656, intron 1 of 12)	intron (NM_009656, intron 1 of 12)	9492.0	NM_009656	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8983497-4	chr19	8982980	8983980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5804.0	NR_104460	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	20.0	56.0	45.5	16.5	37.5	22.5
Merged-chr11-98937608-4	chr11	98937104	98938104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177302)	promoter-TSS (NM_001177302)	-92.0	NM_009024	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75186436-4	chr14	75185934	75186934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	50009.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85601023-4	chr1	85600521	85601521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001013817, exon 1 of 17)	5' UTR (NM_001013817, exon 1 of 17)	318.0	NM_001013817	434484.0	Mm.445821	NM_001013817	ENSMUSG00000070031	Sp140	-	Sp140 nuclear body protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126565398-4	chr8	126564860	126565860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28076.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-68796217-4	chr2	68795715	68796715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65226.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-128642440-4	chr1	128641930	128642930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50131.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	1.5	2.0	4.5	15.5	1.0	10.0
Merged-chr14-70212079-2	chr14	70211579	70212579	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4408.0	NM_011366	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132601491-4	chr4	132601003	132602003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	37436.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-45657804-3	chr16	45657280	45658280	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172455, intron 17 of 17)	intron (NM_172455, intron 17 of 17)	-3662.0	NM_145389	212998.0	Mm.97511	NM_145389	ENSMUSG00000033187	BC016579	-	cDNA sequence, BC016579	protein-coding	18.5	47.5	26.5	7.0	3.0	4.5
Merged-chr5-92441661-4	chr5	92441169	92442169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007644, exon 12 of 12)	3' UTR (NM_007644, exon 12 of 12)	-6470.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26939650-4	chr17	26939164	26940164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026307)	promoter-TSS (NM_026307)	-126.0	NM_026307	67675.0	Mm.439919	NM_026307	ENSMUSG00000024194	Cuta	0610039D01Rik|1810022E02Rik|1810060C03Rik|2700094G22Rik|AI326454	cutA divalent cation tolerance homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118812143-4	chr10	118811662	118812662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56741.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91474741-1	chr6	91474241	91475241	+	1000.0	f1_c57bl6.idr	intron (NM_028766, intron 1 of 11)	intron (NM_028766, intron 1 of 11)	990.0	NM_028766	74122.0	Mm.38801	NM_028766	ENSMUSG00000030095	Tmem43	1200015A22Rik|LUMA	transmembrane protein 43	protein-coding	9.5	36.0	13.0	6.0	12.0	12.0
Merged-chr8-84004884-4	chr8	84004401	84005401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106191)	promoter-TSS (NR_106191)	-727.0	NR_106191	102466886.0		NR_106191	ENSMUSG00000098823	Mir8111	Gm27823|mmu-mir-8111	microRNA 8111	ncRNA	73.5	203.0	174.5	31.0	110.0	89.0
Merged-chr8-72320292-4	chr8	72319784	72320784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008452, intron 2 of 2)	PB1D7|SINE|Alu	1222.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	59.0	175.0	77.0	70.5	148.0	125.0
Merged-chr1-194989208-4	chr1	194988697	194989697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12238.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115375853-2	chr6	115375365	115376365	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001308354, intron 1 of 7)	Lx8b|LINE|L1	13516.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32937110-4	chr5	32936556	32937556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360014, intron 24 of 40)	intron (NM_001360014, intron 24 of 40)	73335.0	NM_001170567	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	41.5	29.0	37.5	4.5	16.0	21.0
Merged-chr2-181680838-2	chr2	181680338	181681338	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001356342, exon 1 of 10)	5' UTR (NM_001356342, exon 1 of 10)	541.0	NM_001356342	21400.0	Mm.24245	NM_009326	ENSMUSG00000059540	Tcea2	AI326274|S-II-T1|SII-T1|Tceat	transcription elongation factor A (SII), 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155848079-2	chr4	155847579	155848579	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356381, intron 1 of 15)	intron (NM_001356381, intron 1 of 15)	677.0	NM_001356381	13542.0	Mm.3400	NM_010091	ENSMUSG00000029071	Dvl1	Dvl|mKIAA4029	dishevelled segment polarity protein 1	protein-coding	2.0	2.5	2.0	0.5	4.5	4.0
Merged-chr2-4493339-4	chr2	4492818	4493818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 4 of 23)	intron (NM_001177843, intron 4 of 23)	-66436.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22265426-4	chr16	22264929	22265929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330555, intron 1 of 9)	CpG	576.0	NM_001330554	20462.0	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93803491-3	chr10	93803015	93804015	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A|LTR|ERVL	-28040.0	NM_001206851	327799.0	Mm.491598	NM_183199	ENSMUSG00000020020	Usp44	E430004F17Rik	ubiquitin specific peptidase 44	protein-coding	8.0	4.0	7.0	1.0	3.5	1.5
Merged-chr2-174330376-1	chr2	174329876	174330876	+	1000.0	f0_balb.idr	exon (NM_001310083, exon 2 of 13)	exon (NM_001310083, exon 2 of 13)	287.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64392697-4	chr7	64392192	64393192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026483)	promoter-TSS (NM_026483)	70.0	NM_001355124	73724.0	Mm.10093	NM_028626	ENSMUSG00000033429	Mcee	1110007A04Rik	methylmalonyl CoA epimerase	protein-coding	78.0	156.0	96.0	87.0	187.5	181.5
Merged-chr3-153406398-4	chr3	153405915	153406915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 3 of 4)	intron (NM_011372, intron 3 of 4)	-107766.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28962420-4	chr7	28961921	28962921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360548)	promoter-TSS (NM_001360548)	-89.0	NM_001360548	60595.0	Mm.81144	NM_021895	ENSMUSG00000054808	Actn4	C77391	actinin alpha 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71198109-4	chr6	71197622	71198622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1757.0	NM_017399	14080.0	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83659603-4	chr7	83659115	83660115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 12 of 18)	intron (NM_001360088, intron 12 of 18)	-4120.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57076196-4	chr9	57075652	57076652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011378)	promoter-TSS (NM_011378)	-103.0	NR_152107	72588.0	Mm.70350	NR_152107		2700012I20Rik	-	RIKEN cDNA 2700012I20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-83184117-4	chr10	83183619	83184619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021439, intron 2 of 2)	MIR|SINE|MIR	153698.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61591178-4	chr8	61590666	61591666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293774)	promoter-TSS (NM_001293774)	3.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	32.0	77.5	71.0	28.0	106.0	72.5
Merged-chr3-95818817-4	chr3	95818257	95819257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081293, exon 1 of 11)	5' UTR (NM_001081293, exon 1 of 11)	196.0	NM_001081293	75137.0	Mm.196275	NM_028328	ENSMUSG00000028106	Rprd2	2810036A19Rik|4930535B03Rik|6720469I21Rik|AL022841|AL022940|AU021304|BB077382|mKIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding	27.5	93.5	60.0	35.5	98.0	62.0
Merged-chr12-64965648-4	chr12	64965156	64966156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025707)	promoter-TSS (NM_025707)	-86.0	NM_177805	328108.0	Mm.138465	NM_177805	ENSMUSG00000035614	Togaram1	A430041B07Rik|BC062107|C130034K06|Fam179b|mKIAA0423	TOG array regulator of axonemal microtubules 1	protein-coding	24.0	28.5	20.5	15.5	34.5	26.0
Merged-chr4-133814839-2	chr4	133814347	133815347	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59884.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	61.0	131.0	77.0	64.0	167.5	116.5
Merged-chr11-54729534-4	chr11	54729046	54730046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178626, intron 3 of 5)	ORR1C1|LTR|ERVL-MaLR	58157.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-39848202-11	chr17	39847697	39848697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_046233, exon 1 of 1)	non-coding (NR_046233, exon 1 of 1)	5200.0	NR_046233	100861531.0		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-46790866-4	chr7	46790357	46791357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005247, intron 2 of 22)	intron (NM_001005247, intron 2 of 22)	5024.0	NM_001005248	246694.0	Mm.379442	NM_178742	ENSMUSG00000014418	Hps5	AI646796|AL022647|C85120|haze|hz|maroon|mr|ru-2|ru2	HPS5, biogenesis of lysosomal organelles complex 2 subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145348350-4	chr6	145347829	145348829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-39296.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	0.0	4.0	8.0	19.5	5.5	7.0
Merged-chr10-80052792-2	chr10	80052292	80053292	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008162)	promoter-TSS (NM_008162)	-696.0	NM_008162	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87919516-4	chr3	87918997	87919997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026591)	promoter-TSS (NM_026591)	-47.0	NM_026591	67707.0	Mm.393802	NM_026591	ENSMUSG00000019710	Mrpl24	2010005E08Rik|2810470K06Rik|6720473G22Rik|AA407670	mitochondrial ribosomal protein L24	protein-coding	7.5	21.5	11.0	5.0	16.0	8.0
Merged-chr8-126573333-4	chr8	126572810	126573810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	20126.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	4.0	10.0	6.5	2.5	14.5	14.5
Merged-chr5-134572322-2	chr5	134571822	134572822	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_106087)	TTS (NR_106087)	246.0	NR_106087	102465708.0		NR_106087	ENSMUSG00000106323	Mir7228	mmu-mir-7228	microRNA 7228	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108854603-4	chr9	108854118	108855118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134420, exon 1 of 18)	5' UTR (NM_134420, exon 1 of 18)	575.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127375703-2	chr7	127375203	127376203	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175560, exon 1 of 3)	exon (NM_175560, exon 1 of 3)	347.0	NM_175560	269997.0	Mm.221270	NM_175560	ENSMUSG00000054381	Zfp747	6430604K15Rik	zinc finger protein 747	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34196607-4	chr7	34196102	34197102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360710)	promoter-TSS (NM_001360710)	68.0	NM_026549	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128740526-4	chr7	128740028	128741028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145955)	promoter-TSS (NM_145955)	-99.0	NM_145955	210711.0	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80172901-4	chr17	80172400	80173400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176963, intron 4 of 6)	intron (NM_176963, intron 4 of 6)	34405.0	NM_001195486	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110652793-2	chr9	110652293	110653293	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183276, intron 1 of 53)	intron (NM_183276, intron 1 of 53)	1368.0	NM_183276	235627.0	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding	2.0	3.5	3.5	0.0	8.0	3.5
Merged-chr10-118087056-2	chr10	118086556	118087556	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-54731.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	27.0	53.5	48.0	78.5	132.5	77.0
Merged-chr7-66356384-4	chr7	66355896	66356896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 2 of 33)	B1F1|SINE|Alu	25328.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	19.5	22.5	22.5	11.0	44.5	29.5
Merged-chr3-103210490-2	chr3	103209990	103210990	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	38835.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90810041-2	chr16	90809541	90810541	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029497, intron 1 of 38)	intron (NM_029497, intron 1 of 38)	372.0	NM_029497	207932.0	Mm.328688	NM_029497	ENSMUSG00000039929	Urb1	4921511H13Rik|5730405K23Rik|AA670781|AI645590|mKIAA0539	URB1 ribosome biogenesis 1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32969586-4	chr2	32969088	32970088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	6287.0	NR_002898	104367.0	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-100100868-4	chr6	100100357	100101357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	186501.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128805489-4	chr10	128804970	128805970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359824)	promoter-TSS (NM_001359824)	-84.0	NM_001359825	74330.0	Mm.296915	NM_028873	ENSMUSG00000025354	Dnajc14	5730551F12Rik|DNAJ|DRIP78|HDJ3|LIP6	DnaJ heat shock protein family (Hsp40) member C14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64603347-4	chr17	64602852	64603852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	1703.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153898617-2	chr1	153898117	153899117	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1309.0	NR_106194	102466257.0		NR_106194	ENSMUSG00000099227	Mir8114	Gm27382|mmu-mir-8114	microRNA 8114	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120484622-4	chr11	120484134	120485134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027204)	promoter-TSS (NM_027204)	-3.0	NM_027204	56282.0	Mm.133851	NM_027204	ENSMUSG00000039640	Mrpl12	0610034O11Rik|1500031N16Rik|L12mt|MRP-L12|Rpml12	mitochondrial ribosomal protein L12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-52099902-4	chr11	52099354	52100354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019411, intron 1 of 6)	intron (NM_019411, intron 1 of 6)	1030.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23698465-4	chr13	23697945	23698945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178208)	promoter-TSS (NM_178208)	13.0	NM_178208	319155.0	Mm.261662	NM_178208	ENSMUSG00000060678	Hist1h4c	-	histone cluster 1, H4c	protein-coding	39.5	106.0	76.5	20.0	68.0	98.0
Merged-chr1-182983163-4	chr1	182982689	182983689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28401.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0.0	0.0	0.0	2.0	0.0	3.0
Merged-chr1-43917072-4	chr1	43916583	43917583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16911.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-87416536-4	chr14	87416032	87417032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172605)	promoter-TSS (NM_172605)	-51.0	NM_172605	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	6.5	16.0	22.5	6.5	11.5	18.0
Merged-chr3-131564026-2	chr3	131563526	131564526	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011863)	promoter-TSS (NM_011863)	-742.0	NM_001289479	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-144223675-4	chr5	144223169	144224169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356992)	promoter-TSS (NM_001356992)	-54.0	NM_001356993	70381.0	Mm.239412	NM_027410	ENSMUSG00000066621	Tecpr1	2210010N04Rik|mKIAA1358	tectonin beta-propeller repeat containing 1	protein-coding	5.5	25.0	19.5	27.0	32.0	20.5
Merged-chr1-118388898-4	chr1	118388394	118389394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359346)	promoter-TSS (NM_001359346)	-164.0	NM_001359329	76707.0	Mm.138740	NM_029709	ENSMUSG00000064302	Clasp1	1700030C23Rik|5730583A19Rik|B130045P17Rik|CLASP1alpha	CLIP associating protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121590381-4	chr8	121589888	121590888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026160)	promoter-TSS (NM_026160)	-80.0	NM_026160	67443.0	Mm.28357	NM_026160	ENSMUSG00000031812	Map1lc3b	1010001C15Rik|Atg8|LC3b|Map1lc3	microtubule-associated protein 1 light chain 3 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184728909-4	chr1	184728391	184729391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008250, intron 3 of 3)	intron (NM_008250, intron 3 of 3)	3602.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132243762-2	chr7	132243262	132244262	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029935, intron 6 of 7)	intron (NM_029935, intron 6 of 7)	-71902.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135715832-4	chr7	135715328	135716328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081117, intron 1 of 13)	intron (NM_001081117, intron 1 of 13)	551.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25070215-4	chr8	25069756	25070756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 3 of 11)	C-rich|Low_complexity|Low_complexity	-31294.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	10.5	23.0	15.5	15.0	31.0	17.5
Merged-chr10-91139233-2	chr10	91138733	91139733	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15270.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29101315-4	chr19	29100818	29101818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021525)	promoter-TSS (NM_021525)	-57.0	NM_021525	59028.0	Mm.28630	NM_021525	ENSMUSG00000024785	Rcl1	2310040A02Rik|AI789745|C76567|RPCL1|Rnac	RNA terminal phosphate cyclase-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80037372-4	chr15	80036850	80037850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME4a|LINE|L1	-22542.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	73.0	113.0	58.5	40.0	91.5	59.0
Merged-chr9-114812152-4	chr9	114811649	114812649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027294, intron 1 of 3)	RSINE1|SINE|B4	-30156.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	0.0	4.5	4.5	9.5	5.0	8.0
Merged-chr11-6626023-4	chr11	6625522	6626522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130457)	promoter-TSS (NM_001130457)	45.0	NM_001130457	21379.0	Mm.247761	NM_134011	ENSMUSG00000000384	Tbrg4	2310042P22Rik|AA120735|AA408001|AI527316|Cpr2|R74877|Tb-12|mKIAA0948	transforming growth factor beta regulated gene 4	protein-coding	31.0	68.5	40.5	16.0	51.5	36.5
Merged-chr5-43185715-4	chr5	43185242	43186242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 5 of 7)	intron (NR_028417, intron 5 of 7)	-47721.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	23.0	44.5	63.0	17.5	15.0	53.5
Merged-chr15-81871913-4	chr15	81871397	81872397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080633)	promoter-TSS (NM_080633)	-5.0	NM_026737	68479.0	Mm.271715	NM_026737	ENSMUSG00000061360	Phf5a	1110007B08Rik	PHD finger protein 5A	protein-coding	65.5	134.0	100.0	37.0	129.0	74.0
Merged-chr1-91456335-9	chr1	91455844	91456844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011066, intron 1 of 22)	intron (NM_011066, intron 1 of 22)	2984.0	NM_011066	18627.0	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107602278-4	chr9	107601792	107602792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042779, intron 9 of 19)	intron (NM_001042779, intron 9 of 19)	3110.0	NM_009153	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0.0	0.0	2.5	0.0	4.5	0.0
Merged-chr11-119041081-4	chr11	119040596	119041596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013926)	promoter-TSS (NM_013926)	-183.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	4.5	0.0	4.0	2.0	3.5	2.5
Merged-chr4-19927203-4	chr4	19926711	19927711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4645.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134243768-4	chr6	134243248	134244248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 5 of 8)	intron (NM_001303102, intron 5 of 8)	-152581.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72914255-4	chr5	72913737	72914737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113423)	promoter-TSS (NM_001113423)	-125.0	NM_001113423	75991.0	Mm.121285	NM_153567	ENSMUSG00000036087	Slain2	5033405K12Rik|8030444K12Rik|AI596370	SLAIN motif family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-35810748-4	chr1	35810239	35811239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-257661.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87743115-4	chr6	87742627	87743627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159697, intron 2 of 7)	intron (NM_001159697, intron 2 of 7)	12258.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	0.0	7.0	1.0	5.5	11.0	2.0
Merged-chr17-34291771-4	chr17	34291259	34292259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3988.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	86.0	266.0	75.5	88.0	204.5	84.5
Merged-chr10-81571765-4	chr10	81571303	81572303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3484.0	NM_019725	21886.0	Mm.38608	NM_019725	ENSMUSG00000034771	Tle2	Grg2|mKIAA4188	transducin-like enhancer of split 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-123171248-4	chr6	123170753	123171753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	-1770.0	NM_001004159	381809.0	Mm.333372	NM_001004159	ENSMUSG00000067767	Clec4b2	Aplra1|F830043G12Rik|mDCAR1	C-type lectin domain family 4, member b2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58498595-4	chr16	58498087	58499087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 2 of 10)	intron (NM_001357433, intron 2 of 10)	24839.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51857923-4	chr11	51857451	51858451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199299)	promoter-TSS (NM_199299)	-321.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62287090-4	chr4	62286579	62287579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025286, intron 1 of 3)	intron (NM_025286, intron 1 of 3)	650.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39714178-4	chr1	39713669	39714669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145660, intron 2 of 14)	intron (NM_001145660, intron 2 of 14)	6820.0	NM_001145660	619289.0	Mm.334107	NM_001145660	ENSMUSG00000057173	Rfx8	4933400N17Rik	regulatory factor X 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23761501-4	chr13	23760960	23761960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178192)	promoter-TSS (NM_178192)	-211.0	NM_178192	326619.0	Mm.228709	NM_178192	ENSMUSG00000060093	Hist1h4a	-	histone cluster 1, H4a	protein-coding	145.5	424.0	275.5	180.0	450.5	312.5
Merged-chr11-97142494-4	chr11	97141979	97142979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198100, intron 6 of 8)	MER94|DNA|hAT-Blackjack	3940.0	NR_106094	102466822.0		NR_106094	ENSMUSG00000099286	Mir7235	Gm27986|mmu-mir-7235	microRNA 7235	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97856425-4	chr6	97855909	97856909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	49351.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	54.5	125.5	71.5	41.5	109.5	96.0
Merged-chr11-72782296-4	chr11	72781796	72782796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024926, intron 3 of 3)	ORR1E|LTR|ERVL-MaLR	13543.0	NM_001024926	192986.0	Mm.194755	NM_001024926	ENSMUSG00000057778	Cyb5d2	9330151E16Rik|Gm2	cytochrome b5 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-59201115-4	chr14	59200627	59201627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360611)	promoter-TSS (NM_001360611)	-101.0	NM_027764	71330.0	Mm.234195	NM_027764	ENSMUSG00000035469	Rcbtb1	5430409I18Rik|AW111883|CLLD7|CLLL7	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68125193-4	chr10	68124686	68125686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 7 of 9)	intron (NM_023598, intron 7 of 9)	145616.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	34.0	90.0	57.5	55.5	135.0	86.0
Merged-chr7-101892833-2	chr7	101892333	101893333	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291352, intron 1 of 5)	B1_Mm|SINE|Alu	-3498.0	NM_001291348	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32580672-4	chr11	32580181	32581181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 4 of 18)	intron (NM_009288, intron 4 of 18)	47415.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	6.5	13.5	6.5	5.5	17.0	10.0
Merged-chr2-34905165-4	chr2	34904691	34905691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028716, intron 6 of 14)	intron (NM_028716, intron 6 of 14)	8785.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135402502-4	chr3	135401986	135402986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20947.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54161023-4	chr11	54160526	54161526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	52262.0	NR_045506	71056.0	Mm.56332	NR_045506	ENSMUSG00000086209	4933405E24Rik	-	RIKEN cDNA 4933405E24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-6241454-4	chr18	6240954	6241954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008448)	promoter-TSS (NM_008448)	70.0	NM_008448	16573.0	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	18.5	53.5	52.5	43.0	67.0	57.5
Merged-chr4-53125276-4	chr4	53124775	53125775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	34620.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160048296-4	chr2	160047793	160048793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC2|LINE|L1	31640.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106759749-4	chr1	106759242	106760242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316750)	promoter-TSS (NM_001316750)	0.0	NM_027534	70750.0	Mm.458911	NM_027534	ENSMUSG00000009905	Kdsr	6330410P18Rik|9430079B08Rik|Fvt1	3-ketodihydrosphingosine reductase	protein-coding	15.5	35.5	40.0	17.0	33.0	44.0
Merged-chr9-96719884-4	chr9	96719376	96720376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359960)	promoter-TSS (NM_001359960)	-26.0	NM_001359959	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-32174336-4	chr14	32173843	32174843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033988, intron 6 of 9)	intron (NM_001033988, intron 6 of 9)	8554.0	NM_019744	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170221129-4	chr2	170220634	170221634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78459.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136147043-4	chr4	136146527	136147527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3205.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	5.5	21.5	9.5	3.0	32.0	12.0
Merged-chr14-31761924-2	chr14	31761424	31762424	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024604, intron 3 of 27)	ORR1D2|LTR|ERVL-MaLR	68491.0	NM_001024604	105522.0	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135935028-4	chr5	135934535	135935535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018871)	promoter-TSS (NM_018871)	-394.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	0.5	0.0	0.5	0.0	0.0	0.0
Merged-chr3-142560044-1	chr3	142559544	142560544	+	1000.0	f0_c57.idr	promoter-TSS (NM_018734)	promoter-TSS (NM_018734)	0.0	NM_001289492	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	51.5	131.5	55.0	39.0	98.0	62.0
Merged-chr17-55945335-4	chr17	55944833	55945833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146249)	promoter-TSS (NM_146249)	-74.0	NM_146249	240120.0	Mm.441018	NM_146249	ENSMUSG00000062101	Zfp119b	-	zinc finger protein 119b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-106639187-4	chr13	106638691	106639691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	297767.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	0.0	0.0	2.5	0.0	0.0	1.5
Merged-chr2-146512189-4	chr2	146511682	146512682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033348)	promoter-TSS (NM_001033348)	-178.0	NM_001033348	241694.0	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding	19.0	23.0	31.5	23.0	39.0	31.0
Merged-chr13-63568033-4	chr13	63567516	63568516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001328514, intron 1 of 23)	CpG	-2281.0	NM_008957	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45961970-4	chr9	45961449	45962449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6700.0	NM_172257	214597.0	Mm.379345	NM_172257	ENSMUSG00000034908	Sidt2	B930096O19|BC023957|CGI-40	SID1 transmembrane family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21831183-5	chr14	21830709	21831709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011695)	promoter-TSS (NM_011695)	-352.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	89.0	278.0	177.0	55.5	263.5	162.5
Merged-chr4-141655987-4	chr4	141655491	141656491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	8124.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	31.5	125.0	70.0	38.0	135.5	56.0
Merged-chr6-89643967-4	chr6	89643465	89644465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001178058)	promoter-TSS (NM_001178058)	-23.0	NM_001178060	232223.0	Mm.229332	NM_153162	ENSMUSG00000000811	Txnrd3	AI196535|TGR|TR2	thioredoxin reductase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45520320-2	chr7	45519820	45520820	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045555, intron 9 of 13)	B2_Mm1a|SINE|B2	5718.0	NM_001290998	56734.0	Mm.439742	NM_008807	ENSMUSG00000023467	Tulp2	Pdet	tubby-like protein 2	protein-coding	3.5	4.5	0.5	2.0	8.5	0.5
Merged-chr9-20997650-2	chr9	20997150	20998150	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-5087.0	NM_023167	66163.0	Mm.427576	NM_023167	ENSMUSG00000003299	Mrpl4	1110017G11Rik	mitochondrial ribosomal protein L4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-36042548-4	chr12	36042048	36043048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025359)	promoter-TSS (NM_025359)	-70.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-75192070-4	chr1	75191570	75192570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026187)	promoter-TSS (NM_026187)	-60.0	NR_109938	245860.0	Mm.238266	NM_001003917	ENSMUSG00000033124	Atg9a	AU019532|Apg9l1|Atg9|Atg9l1	autophagy related 9A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81433061-4	chr10	81432552	81433552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5879.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124273395-4	chr6	124272889	124273889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31262.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-17953489-3	chr11	17952989	17953989	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131916)	promoter-TSS (NR_131916)	386.0	NM_026576	68145.0	Mm.178684	NM_026576	ENSMUSG00000016984	Etaa1	5730466H23Rik|AA672646	Ewing tumor-associated antigen 1	protein-coding	40.0	82.0	83.5	25.5	43.0	60.5
Merged-chr13-101850278-4	chr13	101849786	101850786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-82069.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31608947-4	chr14	31608434	31609434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019975, intron 16 of 16)	intron (NM_019975, intron 16 of 16)	-31551.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24884508-4	chr7	24883998	24884998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360119)	promoter-TSS (NM_001360119)	-94.0	NM_001360128	20085.0	Mm.300281	NM_023133	ENSMUSG00000040952	Rps19	Dsk3	ribosomal protein S19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128731614-4	chr2	128731093	128732093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 2 of 18)	intron (NM_008587, intron 2 of 18)	32678.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99198069-4	chr10	99197573	99198573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027740)	TTS (NM_027740)	-65158.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60279491-2	chr10	60278991	60279991	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011179, intron 1 of 14)	intron (NM_011179, intron 1 of 14)	1863.0	NM_001146121	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120041938-4	chr11	120041467	120042467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198787)	promoter-TSS (NM_001198787)	-186.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	150.5	272.5	253.5	151.5	296.0	238.5
Merged-chr1-151620827-4	chr1	151620319	151621319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	49446.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61643885-4	chr18	61643385	61644385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045420, intron 1 of 2)	intron (NR_045420, intron 1 of 2)	4009.0	NR_029557	387163.0		NR_029557	ENSMUSG00000065592	Mir145a	Mir145|Mirn145|mir-145a|mmu-mir-145|mmu-mir-145a	microRNA 145a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54749512-4	chr14	54749027	54750027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	32359.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	41.0	62.5	66.5	28.0	55.5	55.5
Merged-chr5-24842088-3	chr5	24841608	24842608	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053075, intron 1 of 7)	CpG	253.0	NM_053075	19744.0	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51323284-4	chr13	51322781	51323781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT-int|LTR|ERVL-MaLR	-85337.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126376761-2	chr7	126376261	126377261	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045537, intron 1 of 12)	intron (NR_045537, intron 1 of 12)	1173.0	NM_023712	73658.0	Mm.11112	NM_023712	ENSMUSG00000030741	Spns1	2210013K02Rik|Spin1|Spinl	spinster homolog 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-119357479-4	chr12	119356978	119357978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85932.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28180919-4	chr17	28180379	28181379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172617, intron 2 of 14)	intron (NM_172617, intron 2 of 14)	3461.0	NM_172617	224656.0	Mm.267359	NM_172617	ENSMUSG00000024220	Zfp523	2810027J07|BC025615|Znf76	zinc finger protein 523	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30607908-4	chr14	30607405	30608405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 3 of 17)	intron (NM_011103, intron 3 of 17)	2405.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	2.5	1.0	3.0	2.5	1.0	3.0
Merged-chr12-17679757-4	chr12	17679260	17680260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11049.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	122.0	291.5	218.0	120.5	254.5	217.0
Merged-chr17-84095306-4	chr17	84094805	84095805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	16645.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83662457-4	chr11	83661983	83662983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013652)	promoter-TSS (NM_013652)	-101.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88757702-3	chr4	88757202	88758202	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243150)	promoter-TSS (NM_001243150)	-142.0	NM_001243150	100041062.0	Mm.489587	NM_001243150		Gm13286	-	predicted gene 13286	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-86706313-4	chr10	86705765	86706765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011631)	promoter-TSS (NM_011631)	454.0	NM_001003939	103220.0	Mm.440762	NM_153595	ENSMUSG00000044937	Ttc41	AI449705|AU041509|Gnn	tetratricopeptide repeat domain 41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155385295-4	chr2	155384834	155385834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178111, exon 2 of 4)	5' UTR (NM_178111, exon 2 of 4)	3478.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	3.5	3.0	4.0	2.0	3.5	0.5
Merged-chr2-103744298-2	chr2	103743798	103744798	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153126, exon 9 of 29)	exon (NM_153126, exon 9 of 29)	16972.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99474275-2	chr15	99473774	99474774	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029236, intron 1 of 1)	intron (NM_029236, intron 1 of 1)	456.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	53.5	137.0	109.5	56.0	128.0	84.5
Merged-chr11-115690554-4	chr11	115690052	115691052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	8982.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74724234-7	chr11	74723773	74724773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037610)	promoter-TSS (NR_037610)	111.0	NM_013625	18472.0	Mm.397111	NM_013625	ENSMUSG00000020745	Pafah1b1	LIS-1|Lis1|MMS10-U|Mdsh|Ms10u|Pafaha	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1	protein-coding	50.0	107.0	88.5	47.0	104.5	92.0
Merged-chr17-27910359-4	chr17	27909847	27910847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	1041.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	72.0	240.0	168.5	93.0	233.5	166.5
Merged-chr10-86772545-4	chr10	86772057	86773057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003910, intron 14 of 15)	intron (NM_001003910, intron 14 of 15)	-6448.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191397655-3	chr1	191397162	191398162	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144880)	promoter-TSS (NM_144880)	-621.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	83.0	291.5	168.5	84.5	178.5	104.0
Merged-chr9-96392888-2	chr9	96392388	96393388	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-28457.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	96.5	162.5	128.0	64.5	192.5	105.0
Merged-chr17-64600111-4	chr17	64599609	64600609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	-1540.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29497586-2	chr19	29497086	29498086	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCC)n|Simple_repeat|Simple_repeat	24401.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16252159-2	chr7	16251659	16252659	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001173550, intron 1 of 1)	B1_Mur4|SINE|Alu	7179.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40257644-4	chr10	40257138	40258138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026113)	promoter-TSS (NM_026113)	74.0	NM_001359491	67371.0	Mm.64104	NM_026113	ENSMUSG00000019837	Gtf3c6	2410016F19Rik|AU019813	general transcription factor IIIC, polypeptide 6, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-37423914-2	chr2	37423414	37424414	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1011.0	NM_001290642	319817.0	Mm.288785	NM_001100591	ENSMUSG00000075376	Rc3h2	2900024N03Rik|9430019J22Rik|D930043C02Rik|Mnab|Rnf164	ring finger and CCCH-type zinc finger domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112668158-4	chr12	112667705	112668705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331107, intron 2 of 13)	intron (NM_001331107, intron 2 of 13)	6071.0	NM_001165894	11651.0	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27481753-4	chr7	27481260	27482260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5193.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	0.0	15.0	1.5	3.0	10.5	2.5
Merged-chr5-121197572-4	chr5	121197089	121198089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6192.0	NM_011202	19247.0	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	7.0	1.5	0.5	5.0	3.5	6.0
Merged-chr12-111668688-4	chr12	111668220	111669220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_021273)	TTS (NM_021273)	3618.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-46847021-4	chr7	46846542	46847542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136069)	promoter-TSS (NM_001136069)	-40.0	NM_001136069	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4148578-4	chr19	4148071	4149071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011778)	promoter-TSS (NM_011778)	-92.0	NM_011778	23789.0	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-51089067-4	chr2	51088574	51089574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60037.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155094943-2	chr1	155094443	155095443	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	4693.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-54122018-4	chr10	54121512	54122512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	46090.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21818266-4	chr19	21817762	21818762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033759, intron 12 of 23)	intron (NM_001033759, intron 12 of 23)	39922.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4526454-4	chr7	4525849	4526849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033548, intron 9 of 11)	intron (NM_001033548, intron 9 of 11)	-3821.0	NM_009406	21954.0	Mm.27674	NM_009406	ENSMUSG00000035458	Tnni3	Tn1|cTnI	troponin I, cardiac 3	protein-coding	0.5	0.5	0.0	3.0	1.5	1.0
Merged-chr15-81084045-4	chr15	81083566	81084566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	20981.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	36.5	133.0	102.0	90.0	145.0	83.5
Merged-chr6-13677567-4	chr6	13677050	13678050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175312, intron 1 of 4)	CpG	416.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	10.0	35.0	22.0	10.5	33.5	22.0
Merged-chr3-69679985-4	chr3	69679506	69680506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR1C|LTR|ERV1	-42049.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	39.5	80.0	59.0	49.5	75.0	81.0
Merged-chr14-31131034-4	chr14	31130539	31131539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2109.0	NM_001308464	66487.0	Mm.379116	NM_001308091	ENSMUSG00000058351	Smim4	2010107H07Rik|Gm41122	small integral membrane protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87086805-4	chr11	87086292	87087292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024262)	promoter-TSS (NM_024262)	-15.0	NM_024262	74133.0	Mm.23257	NM_024262	ENSMUSG00000020495	Smg8	1200011M11Rik	smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	22.5	62.5	62.5	19.0	58.5	59.5
Merged-chr7-104314894-3	chr7	104314406	104315406	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040749)	promoter-TSS (NR_040749)	-125.0	NR_040749	622070.0	Mm.486406	NR_040749	ENSMUSG00000087175	Gm15133	-	predicted gene 15133	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13785737-5	chr8	13785195	13786195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025924)	promoter-TSS (NM_025924)	80.0	NM_025924	67031.0	Mm.44858	NM_025924	ENSMUSG00000038398	Upf3a	2600001C03Rik|4930546M19Rik|RENT3A|UPF3	UPF3 regulator of nonsense transcripts homolog A (yeast)	protein-coding	7.5	34.0	22.0	40.0	91.5	56.5
Merged-chr15-80030659-4	chr15	80030223	80031223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5|LINE|L1	-15915.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	66.5	223.0	147.5	78.5	146.0	96.0
Merged-chr5-139286751-4	chr5	139286240	139287240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	33243.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113835216-4	chr5	113834705	113835705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4704.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0.0	0.0	4.5	0.0	0.0	4.5
Merged-chr5-113776379-4	chr5	113775857	113776857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025526, intron 3 of 4)	intron (NM_025526, intron 3 of 4)	3545.0	NM_025526	66383.0	Mm.29497	NM_025526	ENSMUSG00000025825	Iscu	2310020H20Rik|AA407971|Nifu|Nifun	iron-sulfur cluster assembly enzyme	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-30658382-1	chr17	30657882	30658882	+	1000.0	f1_balb.idr	intron (NM_013811, intron 11 of 92)	intron (NM_013811, intron 11 of 92)	31446.0	NM_013811	13417.0	Mm.426017	NM_013811	ENSMUSG00000033826	Dnah8	ATPase|Dnahc8|Hst6.7b|P1-Loop	dynein, axonemal, heavy chain 8	protein-coding	1.5	7.5	5.5	0.0	4.0	1.5
Merged-chr13-37331183-4	chr13	37330698	37331698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14147.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	30.5	38.0	28.0	28.5	30.5	26.5
Merged-chr6-118139188-4	chr6	118138678	118139678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030165)	promoter-TSS (NM_030165)	-38.0	NM_030165	78752.0	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65883585-4	chr5	65883092	65884092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	20023.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-144248379-4	chr5	144247879	144248879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163709, intron 1 of 2)	intron (NM_001163709, intron 1 of 2)	3942.0	NM_001163709	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	17.5	28.5	11.0	3.0	11.5	8.5
Merged-chr5-122769435-4	chr5	122768903	122769903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199676, intron 1 of 16)	ID_B1|SINE|B4	10007.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-3557739-6	chr17	3557076	3558076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045302)	promoter-TSS (NR_045302)	137.0	NM_146074	224481.0	Mm.226554	NM_146074	ENSMUSG00000036983	Tfb1m	AI429207	transcription factor B1, mitochondrial	protein-coding	31.5	60.0	66.0	32.0	64.5	63.0
Merged-chr19-5894135-4	chr19	5893608	5894608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362045)	promoter-TSS (NM_001362045)	20.0	NM_001362045	332359.0	Mm.329642	NM_198634	ENSMUSG00000044390	Tigd3	-	tigger transposable element derived 3	protein-coding	0.5	11.0	2.5	0.0	1.5	0.5
Merged-chr2-30133223-4	chr2	30132715	30133715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146252)	promoter-TSS (NM_146252)	-531.0	NM_146252	70296.0	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-137411089-4	chr7	137410556	137411556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029886)	promoter-TSS (NM_029886)	-300.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82341292-4	chr15	82340690	82341690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177391)	promoter-TSS (NM_177391)	11.0	NM_177391	338368.0	Mm.444916	NM_177391	ENSMUSG00000049687	Fam109b	C920005C14Rik|IPIP27B|Ses2	family with sequence similarity 109, member B	protein-coding	0.5	0.5	2.5	0.0	0.0	2.0
Merged-chr2-14292997-2	chr2	14292497	14293497	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 13 of 29)	MTEa|LTR|ERVL-MaLR	31994.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-31009479-4	chr9	31008974	31009974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-21170.0	NM_001115130	235132.0	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-71362009-4	chr10	71361508	71362508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027184, intron 1 of 5)	intron (NM_027184, intron 1 of 5)	14245.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36792090-4	chr5	36791587	36792587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4667.0	NM_026242	67568.0	Mm.332336	NM_026242	ENSMUSG00000055302	Mrfap1	9130413I22Rik|AL022827|Pam14	Morf4 family associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122105030-4	chr14	122104531	122105531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015586, exon 2 of 4)	non-coding (NR_015586, exon 2 of 4)	1943.0	NR_015586	319727.0	Mm.215552	NR_015586		A330035P11Rik	-	RIKEN cDNA A330035P11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45486779-4	chr9	45486267	45487267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-55535.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	51.0	131.5	106.0	8.0	12.0	20.0
Merged-chr11-62549127-2	chr11	62548627	62549627	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2044.0	NM_011664	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7837067-4	chr9	7836577	7837577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291503)	promoter-TSS (NM_001291503)	-20.0	NM_007465	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27490840-4	chr7	27490338	27491338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_018820)	TTS (NM_018820)	3885.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114679775-4	chr11	114679303	114680303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	4335.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118520122-4	chr2	118519599	118520599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24488.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	30.5	47.5	33.5	36.0	46.5	28.5
Merged-chr1-58722470-6	chr1	58721959	58722959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	-8093.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	37.5	146.0	76.5	29.0	152.0	53.0
Merged-chr1-21079352-4	chr1	21078854	21079854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177409)	promoter-TSS (NM_177409)	-129.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	3.0	9.0	16.0	20.0	11.5	5.0
Merged-chr8-107056755-4	chr8	107056245	107057245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164472)	promoter-TSS (NM_001164472)	-8.0	NM_139229	97484.0	Mm.288641	NM_139229	ENSMUSG00000031916	Cog8	BB235941|C87832	component of oligomeric golgi complex 8	protein-coding	16.0	49.0	33.0	13.5	27.5	37.0
Merged-chr17-56997233-4	chr17	56996740	56997740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025538)	promoter-TSS (NM_025538)	-99.0	NM_025538	66400.0	Mm.196150	NM_025538	ENSMUSG00000002661	Alkbh7	2310045B01Rik|2510008E23Rik|Abh7|Spata11	alkB homolog 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-63177447-4	chr10	63176941	63177941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182992, intron 2 of 19)	intron (NM_182992, intron 2 of 19)	26511.0	NM_182992	68802.0	Mm.259767	NM_182992	ENSMUSG00000020067	Mypn	1110056A04Rik|9830112J03|AI853556|mKIAA4170	myopalladin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55492739-4	chr12	55492225	55493225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010907)	promoter-TSS (NM_010907)	-78.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102279500-4	chr15	102279031	102280031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134100)	promoter-TSS (NM_134100)	75.0	NM_134100	106073.0	Mm.287740	NM_134100	ENSMUSG00000045665	Mfsd5	AA409375|AW556797|D15Mgi27	major facilitator superfamily domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27925769-4	chr17	27925278	27926278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	16472.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	0.0	17.5	11.0	3.5	13.5	11.5
Merged-chr1-87659423-4	chr1	87658913	87659913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	39101.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-98663861-4	chr2	98663343	98664343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	1196186.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.0	0.5	0.0	0.0	0.5	2.0
Merged-chr14-25472706-4	chr14	25472224	25473224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	13539.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-33438394-2	chr5	33437894	33438894	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4304.0	NM_011320	672284.0		NM_011320	ENSMUSG00000029112	Nkx1-1	Nkx-1.1|Sax2	NK1 homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134678242-4	chr5	134677723	134678723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305875)	promoter-TSS (NM_001305875)	25.0	NM_001305875	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18248877-4	chr16	18248373	18249373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011239)	promoter-TSS (NM_011239)	-10.0	NM_001357146	15547.0	Mm.271798	NM_008307	ENSMUSG00000022721	Trmt2a	Htf9c	TRM2 tRNA methyltransferase 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-85370862-4	chr6	85370353	85371353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003955, intron 1 of 5)	intron (NM_001003955, intron 1 of 5)	3781.0	NM_177466	52055.0	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12754772-4	chr17	12754267	12755267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010515, intron 1 of 47)	intron (NM_010515, intron 1 of 47)	13456.0	NR_027784	104103.0	Mm.26553	NR_002853	ENSMUSG00000078247	Airn	2810051F02Rik|2810434M15Rik|AI256653|AI597500|AW049873|Air|B930018I07Rik|D17Ertd663e|IGF2RAS	antisense Igf2r RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131222715-4	chr2	131222206	131223206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-11357.0	NM_001206383	228607.0	Mm.287226	NM_144888	ENSMUSG00000037523	Mavs	D430028G21Rik|IPS-1|Visa|cardif	mitochondrial antiviral signaling protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120102368-4	chr7	120101862	120102862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145586)	promoter-TSS (NM_145586)	-64.0	NM_145586	233806.0	Mm.257952	NM_145586	ENSMUSG00000030917	Tmem159	8430420C20Rik	transmembrane protein 159	protein-coding	0.0	0.0	0.0	11.5	0.0	0.0
Merged-chr12-44210210-4	chr12	44209697	44210697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013760)	promoter-TSS (NM_013760)	-116.0	NR_049203	100885842.0		NR_049203	ENSMUSG00000093618	Mir5627	Gm23684|mir-5627|mmu-mir-5627	microRNA 5627	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118763029-4	chr9	118762584	118763584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	51392.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.5	1.5	7.0	3.0	9.5	0.0
Merged-chr6-28422393-2	chr6	28421893	28422893	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028900)	promoter-TSS (NM_028900)	-669.0	NM_028900	74375.0	Mm.332950	NM_028900	ENSMUSG00000029708	Gcc1	4932417P04Rik	golgi coiled coil 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147123042-2	chr4	147122542	147123542	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-52824.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-97661844-8	chr1	97661266	97662266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355072)	promoter-TSS (NM_001355072)	-90.0	NM_001355072	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66005019-4	chr5	66004509	66005509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027961)	promoter-TSS (NR_027961)	-724.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-91080740-4	chr10	91080241	91081241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042558, intron 1 of 26)	intron (NM_001042558, intron 1 of 26)	2002.0	NM_001042558	11783.0	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	42.5	103.5	43.0	13.0	52.0	29.5
Merged-chr17-21515881-4	chr17	21515393	21516393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19646.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	11.0	8.5	4.0	12.0	7.5	8.0
Merged-chr17-47273179-4	chr17	47272699	47273699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 4 of 19)	intron (NM_001097623, intron 4 of 19)	42969.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77801437-4	chr11	77800935	77801935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291214, intron 1 of 38)	intron (NM_001291214, intron 1 of 38)	137.0	NM_001291215	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83506967-4	chr6	83506447	83507447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162521)	promoter-TSS (NM_001162521)	22.0	NM_013764	27369.0	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-137609955-3	chr7	137609456	137610456	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	172282.0	NR_033611	620016.0	Mm.388932	NR_033611	ENSMUSG00000100863	Gm12669	-	glutaredoxin 3 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70844766-4	chr11	70844267	70845267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291143)	promoter-TSS (NM_001291143)	6.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	3.0	30.0	12.5	0.0	4.0	1.5
Merged-chr5-139287295-4	chr5	139286803	139287803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	33806.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78259101-2	chr15	78258601	78259601	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008677, intron 7 of 9)	intron (NM_008677, intron 7 of 9)	14290.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	75.5	217.5	138.0	47.5	192.5	122.0
Merged-chr2-157367685-4	chr2	157367194	157368194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026968)	promoter-TSS (NM_026968)	100.0	NM_026968	69161.0	Mm.228619	NM_026968	ENSMUSG00000063019	Manbal	1810024K12Rik|AI836500	mannosidase, beta A, lysosomal-like	protein-coding	73.0	158.5	122.0	64.5	106.0	133.5
Merged-chr3-107332131-2	chr3	107331631	107332631	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001045807, exon 1 of 2)	exon (NM_001045807, exon 1 of 2)	1158.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-30444850-4	chr18	30444325	30445325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	171960.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	44.0	20.5	27.5	25.0	37.5	26.0
Merged-chr15-5447752-2	chr15	5447252	5448252	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	-48566.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34399345-4	chr6	34398851	34399851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13011.0	NM_009731	11997.0	Mm.482073	NM_009731	ENSMUSG00000052131	Akr1b7	AR|Avdp|MVDP	aldo-keto reductase family 1, member B7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35050767-1	chr9	35050267	35051267	+	1000.0	f0_balb.idr	intron (NM_009178, intron 9 of 10)	intron (NM_009178, intron 9 of 10)	-65961.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	74.5	79.5	75.0	52.0	112.5	96.0
Merged-chr2-60877144-2	chr2	60876644	60877644	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	4294.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88731007-4	chr10	88730527	88731527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025859)	promoter-TSS (NM_025859)	74.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-133123382-4	chr7	133122829	133123829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009980, exon 1 of 11)	5' UTR (NM_009980, exon 1 of 11)	154.0	NM_009980	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55790550-4	chr16	55790045	55791045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31593.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129387686-4	chr2	129387193	129388193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16554.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	199.5	465.0	349.0	188.5	542.0	357.0
Merged-chr17-17837976-1	chr17	17837476	17838476	+	1000.0	f0_c57.idr	intron (NM_001162909, intron 6 of 8)	intron (NM_001162909, intron 6 of 8)	7001.0	NM_001162909	75202.0	Mm.227456	NM_029205	ENSMUSG00000080316	Spaca6	4930546H06Rik|9530079D04Rik|B230206P06Rik|Ncrna00085|SPACA6A|let-7e|mir-125a|mir-99b	sperm acrosome associated 6	protein-coding	17.0	54.5	57.0	25.0	49.0	51.5
Merged-chr10-40140364-2	chr10	40139864	40140864	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	1890.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66126652-4	chr9	66126171	66127171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026635)	promoter-TSS (NM_026635)	60.0	NM_026635	68250.0	Mm.27107	NM_026635	ENSMUSG00000032381	Fam96a	5730536A07Rik	family with sequence similarity 96, member A	protein-coding	7.5	43.5	10.5	9.0	41.5	11.0
Merged-chr6-125096901-4	chr6	125096427	125097427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106012)	promoter-TSS (NR_106012)	-97.0	NR_106012	102466272.0		NR_106012	ENSMUSG00000098762	Mir7045	Gm27758|mmu-mir-7045	microRNA 7045	ncRNA	1.0	12.0	4.0	8.0	7.0	1.5
Merged-chr7-90042625-4	chr7	90042136	90043136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110364, intron 5 of 5)	intron (NR_110364, intron 5 of 5)	13477.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	107.0	217.5	172.0	61.0	217.0	150.5
Merged-chr14-101516763-4	chr14	101516249	101517249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	RMER19B|LTR|ERVK	92442.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-33246153-4	chr4	33245662	33246662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033225, exon 2 of 2)	exon (NM_001033225, exon 2 of 2)	2625.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110657801-4	chr9	110657313	110658313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	1310.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	58.0	97.5	68.5	30.5	91.5	45.5
Merged-chr17-34238554-1	chr17	34238054	34239054	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_010389)	promoter-TSS (NM_010389)	-351.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	10.0	33.5	3.5	6.0	6.5	3.5
Merged-chr17-34391657-4	chr17	34391156	34392156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7164.0	NM_001001177	407788.0	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	0.0	0.0	1.0	0.0	5.5	2.0
Merged-chr2-44953213-4	chr2	44952696	44953696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69981.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80088670-2	chr11	80088170	80089170	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029856)	promoter-TSS (NM_001029856)	-730.0	NM_001029856	237877.0	Mm.89551	NM_001029856	ENSMUSG00000017550	Atad5	C130052G03Rik|FRAG1|Gm17	ATPase family, AAA domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62343632-3	chr9	62343113	62344113	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 1 of 6)	CpG	2270.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75651942-4	chr11	75651445	75652445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080774)	promoter-TSS (NM_001080774)	-205.0	NM_001080774	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	168.5	380.5	299.5	161.5	370.5	277.5
Merged-chr5-123694663-4	chr5	123694167	123695167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10306.0	NM_001359222	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-148917999-4	chr3	148917501	148918501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081298, intron 1 of 23)	intron (NM_001081298, intron 1 of 23)	36634.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	69.5	156.5	108.0	78.0	151.5	89.0
Merged-chr5-151368606-4	chr5	151368123	151369123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045699)	promoter-TSS (NR_045699)	-52.0	NR_045700	625175.0	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181244117-4	chr2	181243617	181244617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2090.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-137825521-4	chr6	137825024	137826024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172733, intron 6 of 8)	intron (NM_172733, intron 6 of 8)	70947.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54805569-1	chr13	54805069	54806069	+	1000.0	f1_balb.idr	Intergenic	Intergenic	16164.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	0.0	1.5	1.0	0.0	1.5	2.0
Merged-chr8-70768425-4	chr8	70767932	70768932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008841, exon 16 of 16)	3' UTR (NM_008841, exon 16 of 16)	-1769.0	NM_023065	65972.0	Mm.30241	NM_023065		Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	295.0	603.5	453.0	267.5	514.5	450.5
Merged-chr18-4288007-4	chr18	4287492	4288492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64961.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94519193-4	chr16	94518669	94519669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 1 of 7)	MTE2b|LTR|ERVL-MaLR	7460.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-85072415-2	chr16	85071922	85072922	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 5 of 15)	intron (NM_001198825, intron 5 of 15)	100211.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	120.0	254.5	156.0	103.0	190.0	162.0
Merged-chr5-29861682-4	chr5	29861170	29862170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-125734.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110770202-2	chr5	110769702	110770702	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152254)	promoter-TSS (NR_152254)	515.0	NM_029337	75560.0	Mm.270487	NM_029337	ENSMUSG00000029505	Ep400	1700020J09Rik|AU023439|mDomino|mKIAA1498|p400	E1A binding protein p400	protein-coding	2.5	14.0	19.0	7.0	7.5	14.5
Merged-chr8-105261867-2	chr8	105261367	105262367	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033161, intron 1 of 4)	intron (NM_001033161, intron 1 of 4)	2727.0	NM_001033161	71609.0	Mm.264255	NM_001033161	ENSMUSG00000031887	Tradd	9130005N23Rik|AA930854	TNFRSF1A-associated via death domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116685635-4	chr4	116685208	116686208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040442, exon 2 of 3)	intron (NM_011034, intron 1 of 5)	109.0	NM_011034	18477.0	Mm.30929	NM_011034	ENSMUSG00000028691	Prdx1	MSP23|NkefA|OSF-3|OSF3|PAG|Paga|PrdxI|PrxI|TDX2|TPxA|Tdpx2|prx1	peroxiredoxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55895363-4	chr16	55894862	55895862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134457)	promoter-TSS (NM_001134457)	-83.0	NM_001134457	385658.0	Mm.310635	NM_001134457	ENSMUSG00000075033	Nxpe3	Fam55c|Gm1752|Gm611	neurexophilin and PC-esterase domain family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50190516-4	chr17	50190025	50191025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181397)	promoter-TSS (NM_181397)	-28.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122348669-4	chr2	122348171	122349171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001099297)	TTS (NM_001099297)	20247.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	6.5	10.5	1.0	8.5	11.5	4.5
Merged-chr7-126976121-4	chr7	126975607	126976607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362232)	promoter-TSS (NM_001362232)	193.0	NM_001347656	52858.0	Mm.28219	NM_026638	ENSMUSG00000030682	Cdipt	9530042F15Rik|D7Bwg0575e|Pis|Pis1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56134719-4	chr17	56134203	56135203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013662)	promoter-TSS (NM_013662)	-851.0	NM_013662	20359.0	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-64917819-4	chr12	64917333	64918333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025605)	promoter-TSS (NM_001025605)	-78.0	NM_001025605	217648.0	Mm.341586	NM_001025605	ENSMUSG00000047227	Gm527	-	predicted gene 527	protein-coding	5.5	0.0	3.5	1.5	5.5	1.0
Merged-chr9-121719041-4	chr9	121718544	121719544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010918)	promoter-TSS (NM_010918)	-137.0	NM_010918	18087.0	Mm.32842	NM_010918	ENSMUSG00000032525	Nktr	5330401F18Rik|D9Wsu172e	natural killer tumor recognition sequence	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117405455-4	chr8	117404973	117405973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 3 of 20)	L1MB7|LINE|L1	-47550.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123924247-4	chr9	123923758	123924758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44434.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84576958-3	chr10	84576456	84577456	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146008)	promoter-TSS (NM_146008)	9.0	NM_146008	216198.0	Mm.296142	NM_146008	ENSMUSG00000020034	Tcp11l2	E430026E19Rik	t-complex 11 (mouse) like 2	protein-coding	0.0	10.0	7.0	7.0	12.5	15.0
Merged-chr14-66225232-6	chr14	66224748	66225748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-11424.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67451573-4	chr7	67451024	67452024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78666.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	62.0	154.5	113.5	85.5	131.0	109.5
Merged-chr19-41381885-4	chr19	41381404	41382404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 1 of 16)	intron (NM_031376, intron 1 of 16)	3166.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	252.0	716.5	492.5	259.0	622.0	393.0
Merged-chr12-108639400-4	chr12	108638954	108639954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	3701.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69768430-2	chr11	69767930	69768930	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029348, intron 1 of 3)	MIR|SINE|MIR	2518.0	NM_029348	75580.0	Mm.426361	NM_029348	ENSMUSG00000018750	Zbtb4	2310026P19Rik|9230111I22Rik|mKIAA1538	zinc finger and BTB domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-75789626-4	chr13	75789133	75790133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50252.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	132.0	200.0	159.5	84.5	245.0	187.0
Merged-chr11-98940447-2	chr11	98939947	98940947	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177303, intron 1 of 8)	intron (NM_001177303, intron 1 of 8)	736.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-57487194-4	chr8	57486748	57487748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126555)	promoter-TSS (NR_126555)	612.0	NM_021788	60406.0	Mm.118	NM_021788	ENSMUSG00000031609	Sap30	30kDa	sin3 associated polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145254577-4	chr4	145254070	145255070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-7700.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-62646196-4	chr2	62645711	62646711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027835)	promoter-TSS (NM_027835)	44.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-98202390-4	chr4	98201857	98202857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	180908.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124705096-4	chr2	124704605	124705605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51524.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43769108-4	chr13	43768605	43769605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-16007.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75131088-4	chr14	75130595	75131595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027581)	promoter-TSS (NM_027581)	-28.0	NM_001247984	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32564567-4	chr4	32564078	32565078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109661, intron 3 of 4)	intron (NM_001109661, intron 3 of 4)	7084.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	174.5	383.0	232.0	151.5	317.0	209.0
Merged-chr16-76337107-4	chr16	76336620	76337620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358238, intron 2 of 3)	intron (NM_001358238, intron 2 of 3)	35929.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34389267-2	chr7	34388767	34389767	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025948, intron 1 of 10)	CpG	438.0	NM_001360654	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142560557-4	chr3	142560119	142561119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001289493, exon 1 of 11)	5' UTR (NM_001289493, exon 1 of 11)	263.0	NM_001289493	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	50.5	64.5	48.5	46.0	117.0	62.0
Merged-chr10-40141659-2	chr10	40141159	40142159	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	595.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-36720224-4	chr7	36719713	36720713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172298, intron 1 of 1)	intron (NM_172298, intron 1 of 1)	22095.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	48.0	82.0	89.0	23.0	29.0	32.5
Merged-chr16-91826000-4	chr16	91825519	91826519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 14 of 15)	intron (NM_001110276, intron 14 of 15)	96648.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118510792-2	chr2	118510292	118511292	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31096.0	NM_009273	20813.0	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	2.0	0.0	0.0	0.0	1.5	0.0
Merged-chr6-89455569-3	chr6	89455076	89456076	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 4 of 6)	intron (NM_001167736, intron 4 of 6)	-92963.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-36083727-4	chr19	36083227	36084227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019428)	promoter-TSS (NM_019428)	11.0	NM_019428	54364.0	Mm.277891	NM_019428	ENSMUSG00000024800	Rpp30	Rnasep2|TSG15	ribonuclease P/MRP 30 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-106441116-2	chr7	106440619	106441619	+	1000.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NR_003967)	promoter-TSS (NR_003967)	-46.0	NR_003967	209380.0	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	14.5	11.5	6.5	48.0	66.5	45.5
Merged-chr11-116844130-2	chr11	116843630	116844630	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033398)	promoter-TSS (NM_033398)	615.0	NM_028865	74319.0	Mm.429312	NM_028865	ENSMUSG00000090266	Mettl23	1110005A03Rik|1500035B17Rik|4933424L15Rik	methyltransferase like 23	protein-coding	3.0	18.0	17.0	8.0	7.5	35.5
Merged-chr10-71347748-4	chr10	71347255	71348255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347191)	promoter-TSS (NM_001347191)	-8.0	NM_001347191	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-102695482-7	chr13	102694992	102695992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360519, intron 1 of 2)	intron (NM_001360519, intron 1 of 2)	1934.0	NM_008533	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	43.5	117.0	70.0	57.5	133.0	76.0
Merged-chr2-145824970-4	chr2	145824469	145825469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	38853.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110698623-4	chr11	110698122	110699122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	219282.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-55203357-4	chr6	55202873	55203873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177883)	promoter-TSS (NM_177883)	-10.0	NM_177883	330323.0	Mm.268997	NM_177883	ENSMUSG00000038022	Mindy4	C330043M08Rik|Fam188b|Gm1406	MINDY lysine 48 deubiquitinase 4	protein-coding	2.5	8.5	3.0	1.5	6.0	6.5
Merged-chr4-136239838-4	chr4	136239337	136240337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008232, intron 17 of 24)	intron (NM_001008232, intron 17 of 24)	-8120.0	NM_011542	21401.0	Mm.112	NM_011542	ENSMUSG00000001604	Tcea3	S-II|SII-K1	transcription elongation factor A (SII), 3	protein-coding	0.0	0.5	0.0	0.0	0.0	3.5
Merged-chr7-101550863-4	chr7	101550361	101551361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4941.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	242.5	576.0	424.0	198.0	499.0	339.5
Merged-chr5-134520317-4	chr5	134519835	134520835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039162, intron 3 of 15)	intron (NM_001039162, intron 3 of 15)	32099.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27351671-4	chr14	27351160	27352160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	-9729.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	42.5	186.5	96.0	57.5	154.0	93.5
Merged-chr11-22512650-4	chr11	22512093	22513093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153596, intron 1 of 3)	CpG	310.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	9.0	14.5	16.5	9.0	14.5	12.0
Merged-chr7-144918674-1	chr7	144918174	144919174	+	1000.0	f1_c57bl6.idr	intron (NM_001347537, intron 3 of 3)	intron (NM_001347537, intron 3 of 3)	3574.0	NM_001347537	72284.0	Mm.273049	NM_028184	ENSMUSG00000031072	Oraov1	2210010N10Rik|TAOS1	oral cancer overexpressed 1	protein-coding	4.5	1.0	2.0	0.0	0.0	0.0
Merged-chr17-32830262-4	chr17	32829720	32830720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293229)	promoter-TSS (NM_001293229)	41.0	NM_001293229	240064.0	Mm.476307	NM_177359	ENSMUSG00000095253	Zfp799	6030490I01Rik	zinc finger protein 799	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106011444-4	chr8	106010962	106011962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025518)	promoter-TSS (NM_025518)	-16.0	NM_025518	66369.0	Mm.287500	NM_025518	ENSMUSG00000031901	Dus2	2310016K04Rik|Dus2l	dihydrouridine synthase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25601480-4	chr8	25600976	25601976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308482)	promoter-TSS (NM_001308482)	-125.0	NM_001308481	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113993902-4	chr5	113993421	113994421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198109)	promoter-TSS (NM_198109)	-164.0	NM_198109	231637.0	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot protein phosphatase 1	protein-coding	10.0	22.0	22.5	10.0	22.0	22.5
Merged-chr9-65435795-4	chr9	65435310	65436310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027134)	promoter-TSS (NM_027134)	28.0	NM_027134	69606.0	Mm.287956	NM_027134	ENSMUSG00000059183	Mtfmt	2310020P08Rik	mitochondrial methionyl-tRNA formyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-36053818-3	chr12	36053322	36054322	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11344.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	12.0	7.5	15.0	15.5	42.5	83.5
Merged-chr15-98506421-4	chr15	98505936	98506936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8962.0	NM_001001807	258502.0	Mm.377539	NM_001001807	ENSMUSG00000054036	Olfr279	MOR122-1|Olfr234|Olfr234-ps1|Olfr279-ps1	olfactory receptor 279	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-52677339-4	chr5	52676834	52677834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7633.0	NM_172490	211006.0	Mm.244719	NM_172490	ENSMUSG00000029173	Sepsecs	AA986712|D5Ertd135e|SLA|SecS	Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase	protein-coding	7.0	4.0	6.5	3.5	15.5	9.5
Merged-chr7-130533505-4	chr7	130532984	130533984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162855, intron 10 of 10)	intron (NM_001162855, intron 10 of 10)	-13115.0	NM_001271343	11907.0	Mm.216321	NM_013799	ENSMUSG00000030850	Ate1	AI225793|AW547406	arginyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133162654-2	chr4	133162154	133163154	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	32021.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	14.5	32.5	31.5	5.5	42.0	37.0
Merged-chr16-36935405-1	chr16	36934905	36935905	+	1000.0	f0_balb.idr	intron (NM_008225, intron 1 of 13)	intron (NM_008225, intron 1 of 13)	422.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65724594-4	chr5	65724163	65725163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVL-B4-int|LTR|ERVL	-26807.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34531842-4	chr5	34531345	34532345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	6061.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-80931574-2	chr5	80931074	80932074	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88997.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-55557348-4	chr15	55556863	55557863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134092)	promoter-TSS (NM_134092)	-45.0	NM_134092	105837.0	Mm.390829	NM_134092	ENSMUSG00000022369	Mtbp	AI429604|MDM2BP	Mdm2, transformed 3T3 cell double minute p53 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119352268-4	chr11	119351777	119352777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018822, intron 2 of 7)	L1MB2|LINE|L1	3233.0	NM_018822	27029.0	Mm.103788	NM_018822	ENSMUSG00000005043	Sgsh	4632406A19Rik	N-sulfoglucosamine sulfohydrolase (sulfamidase)	protein-coding	15.5	6.0	27.5	24.5	16.5	14.0
Merged-chr6-128362780-4	chr6	128362246	128363246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001326586)	promoter-TSS (NM_001326586)	76.0	NM_001326586	72440.0	Mm.143908	NM_197981	ENSMUSG00000048668	Rhno1	2510047L19Rik|5930416I19Rik	RAD9-HUS1-RAD1 interacting nuclear orphan 1	protein-coding	53.5	140.0	64.0	48.0	116.5	56.5
Merged-chr15-73596663-4	chr15	73596153	73597153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168255)	promoter-TSS (NM_001168255)	-127.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-19019010-4	chr11	19018514	19019514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001193271)	promoter-TSS (NM_001193271)	-45.0	NM_010789	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	1.0	13.5	3.0	1.5	16.0	8.5
Merged-chr16-32171155-4	chr16	32170646	32171646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5552.0	NM_001347181	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21188612-4	chr5	21188097	21189097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 1 of 26)	intron (NR_153365, intron 1 of 26)	2330.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34187767-4	chr13	34187253	34188253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 10 of 10)	intron (NM_001033167, intron 10 of 10)	24789.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	18.0	67.5	57.0	33.5	89.0	39.5
Merged-chr11-87127125-4	chr11	87126633	87127633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197987)	promoter-TSS (NM_197987)	58.0	NM_197987	68729.0	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95588827-4	chr3	95588325	95589325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177669)	promoter-TSS (NM_001177669)	-109.0	NM_146133	229593.0	Mm.245830	NM_146133	ENSMUSG00000046519	Golph3l	2010204I15Rik|AU015439|AW549227|C77637|Gpp34r	golgi phosphoprotein 3-like	protein-coding	4.0	15.5	16.5	11.5	0.0	4.0
Merged-chr8-120709366-4	chr8	120708844	120709844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27014.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	1.5	2.5	0.0	0.0	2.0	1.0
Merged-chr13-41552096-4	chr13	41551621	41552621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54095.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23621713-4	chr13	23621216	23622216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178194)	promoter-TSS (NM_178194)	-592.0	NM_178194	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6341131-4	chr19	6340657	6341657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291787)	promoter-TSS (NM_001291787)	-3.0	NM_009006	26412.0	Mm.25860	NM_009006	ENSMUSG00000024948	Map4k2	AI385662|BL44|GCK|Rab8ip	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-71136566-4	chr12	71136086	71137086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029818)	promoter-TSS (NM_029818)	89.0	NM_001024853	30056.0	Mm.207767	NM_013896	ENSMUSG00000021079	Timm9	2810011L15Rik|Tim10a|Timm10	translocase of inner mitochondrial membrane 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129058084-4	chr4	129057585	129058585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029219)	promoter-TSS (NM_029219)	-186.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88647211-4	chr8	88646680	88647680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145857)	promoter-TSS (NM_145857)	-167.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	60.0	80.0	52.5	96.0	244.5	196.5
Merged-chr3-53463244-4	chr3	53462751	53463751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172501)	promoter-TSS (NM_172501)	7.0	NM_172501	212114.0	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34651800-4	chr18	34651309	34652309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178347)	promoter-TSS (NM_178347)	-73.0	NM_178347	52563.0	Mm.196638	NM_178347	ENSMUSG00000024370	Cdc23	6030435O18|D18Ertd243e	CDC23 cell division cycle 23	protein-coding	5.5	23.5	19.0	8.5	11.5	24.0
Merged-chr2-5014824-4	chr2	5014317	5015317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-2026.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	17.0	52.0	35.5	46.0	44.5	24.5
Merged-chr3-127896078-8	chr3	127895580	127896580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027482, exon 1 of 2)	exon (NM_027482, exon 1 of 2)	243.0	NM_027482	70617.0	Mm.317049	NM_027482	ENSMUSG00000050549	Fam241a	2700063A17Rik|5730508B09Rik|C80506	family with sequence similarity 241, member A	protein-coding	12.0	48.5	22.0	6.5	32.0	27.5
Merged-chr4-140701319-4	chr4	140700843	140701843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173867)	promoter-TSS (NM_173867)	-130.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105036514-4	chr3	105036037	105037037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 2 of 5)	intron (NM_030249, intron 2 of 5)	16416.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96268654-4	chr3	96268159	96269159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178215)	promoter-TSS (NM_178215)	5.0	NM_178215	319154.0	Mm.383293	NM_178215	ENSMUSG00000074403	Hist2h3b	H3-615|H3-616	histone cluster 2, H3b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73941966-4	chr17	73941452	73942452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 2 of 35)	intron (NM_011723, intron 2 of 35)	8244.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-33996510-3	chr5	33995994	33996994	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001001985, exon 1 of 3)	5' UTR (NM_001001985, exon 1 of 3)	510.0	NM_001001985	269642.0	Mm.274610	NM_001001985	ENSMUSG00000048142	Nat8l	1110038O08Rik|Shati	N-acetyltransferase 8-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95311231-4	chr3	95310724	95311724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3966.0	NM_029789	76893.0	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-83845368-4	chr3	83844862	83845862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3754.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115626897-2	chr11	115626397	115627397	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252395, intron 1 of 7)	B1_Mus1|SINE|Alu	1398.0	NM_001252394	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	1.0	4.5	1.0	0.0	6.0	2.0
Merged-chr11-19965465-4	chr11	19964973	19965973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	41031.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167351620-4	chr2	167351139	167352139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2461.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89908206-2	chr3	89907706	89908706	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	4990.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10847042-2	chr19	10846542	10847542	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023044, intron 1 of 7)	ID4|SINE|ID	4498.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3173306-1	chr11	3172806	3173806	+	1000.0	f1_balb.idr	intron (NM_030207, intron 6 of 32)	B1_Mur2|SINE|Alu	20157.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91748381-4	chr12	91747889	91748889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	38047.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128484242-2	chr10	128483742	128484742	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114097, intron 23 of 27)	intron (NM_001114097, intron 23 of 27)	8767.0	NM_001317220	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-85587525-4	chr6	85586973	85587973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145223)	promoter-TSS (NM_145223)	-58.0	NM_145223	236266.0	Mm.246967	NM_145223	ENSMUSG00000063810	Alms1	bbb	ALMS1, centrosome and basal body associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125012944-4	chr8	125012383	125013383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016909)	promoter-TSS (NM_016909)	-114.0	NM_016909	53424.0	Mm.5248	NM_016909	ENSMUSG00000056820	Tsnax	R74833|Trax	translin-associated factor X	protein-coding	35.5	71.0	92.0	40.0	45.5	69.0
Merged-chr4-108579342-4	chr4	108578852	108579852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172697)	promoter-TSS (NM_172697)	-16.0	NM_172697	230596.0	Mm.157534	NM_172697	ENSMUSG00000063800	Prpf38a	2410002M20Rik	PRP38 pre-mRNA processing factor 38 (yeast) domain containing A	protein-coding	32.5	77.0	54.0	34.5	73.5	55.0
Merged-chr17-10319306-4	chr17	10318816	10319816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159517)	promoter-TSS (NM_001159517)	45.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99965172-4	chr12	99964672	99965672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164427, intron 1 of 2)	intron (NM_001164427, intron 1 of 2)	673.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-13041480-2	chr7	13040980	13041980	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001290453)	TTS (NM_001290453)	-3205.0	NM_001168469	22192.0	Mm.196580	NM_145578	ENSMUSG00000005575	Ube2m	2510040H03Rik|UBC12|Ubc-rs2	ubiquitin-conjugating enzyme E2M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-121450248-4	chr2	121449780	121450780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001025371)	TTS (NM_001025371)	1082.0	NR_110986	378702.0	Mm.262252	NM_011354	ENSMUSG00000074884	Serf2	C80083|Msmac1l|m4F5rel	small EDRK-rich factor 2	protein-coding	32.5	11.0	26.5	19.0	22.5	15.5
Merged-chr15-31339035-3	chr15	31338515	31339515	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027496, intron 1 of 3)	L1MB4|LINE|L1	28744.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77985202-2	chr11	77984702	77985702	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_174852, intron 2 of 14)	intron (NM_174852, intron 2 of 14)	2386.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25861980-4	chr14	25861483	25862483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013469, intron 1 of 14)	intron (NM_013469, intron 1 of 14)	19828.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88128622-3	chr15	88128141	88129141	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-186233.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	12.0	25.0	22.5	244.5	434.5	313.5
Merged-chr17-57290977-4	chr17	57290475	57291475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 1 of 25)	intron (NM_001163816, intron 1 of 25)	11875.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-68474824-2	chr18	68474324	68475324	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45504.0	NM_001301372	17200.0	Mm.426053	NM_008560	ENSMUSG00000045569	Mc2r	ACTH-R|ACTHR|MC2-R	melanocortin 2 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120666845-2	chr6	120666345	120667345	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128151, intron 1 of 18)	CpG-12437	424.0	NM_001128151	330409.0	Mm.333357	NM_001128151	ENSMUSG00000071226	Cecr2	2610101O16Rik|2810409N01Rik|Gtl4|mKIAA1740	CECR2, histone acetyl-lysine reader	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40656092-4	chr12	40655578	40656578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 8 of 52)	intron (NM_172803, intron 8 of 52)	210025.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80860911-4	chr7	80860421	80861421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1187.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	16.0	44.0	31.5	19.5	45.5	30.5
Merged-chr12-85344425-3	chr12	85343917	85344917	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 3 of 4)	intron (NM_026775, intron 3 of 4)	-5055.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76369557-4	chr12	76369062	76370062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172104)	promoter-TSS (NM_001172104)	-2.0	NM_028356	109929.0	Mm.41880	NM_028356	ENSMUSG00000056459	Zbtb25	2810462M08Rik|2900064P18Rik|AI842128|Kup|Zfp-50|Zfp50	zinc finger and BTB domain containing 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134494599-4	chr1	134494121	134495121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145510)	promoter-TSS (NM_145510)	-39.0	NM_145510	98710.0	Mm.198119	NM_145510	ENSMUSG00000042229	Rabif	AI842864|AW549708|E130318E12Rik|MSS4|RASGFR3	RAB interacting factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127777061-4	chr7	127776551	127777551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178029)	promoter-TSS (NM_178029)	-338.0	NM_178029	233904.0	Mm.435494	NM_010940	ENSMUSG00000042308	Setd1a	BC010250|KMT2F|Nsccn1|mKIAA0339|mNSC1	SET domain containing 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135713631-4	chr5	135713141	135714141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 1 of 15)	intron (NM_008898, intron 1 of 15)	22248.0	NR_106001	102466791.0		NR_106001	ENSMUSG00000099197	Mir7034	Gm27372|mmu-mir-7034	microRNA 7034	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66919565-4	chr15	66919051	66920051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018865, exon 5 of 5)	3' UTR (NM_018865, exon 5 of 5)	28158.0	NM_018865	22402.0	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131180161-4	chr2	131179658	131180658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007682)	promoter-TSS (NM_007682)	-91.0	NM_007682	12616.0	Mm.440169	NM_007682	ENSMUSG00000068267	Cenpb	CENP-B	centromere protein B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40844357-4	chr4	40843841	40844841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	5797.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74572902-4	chr11	74572401	74573401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 1 of 24)	intron (NM_001015046, intron 1 of 24)	17257.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	4.0	3.0	8.0	0.0	18.0	4.5
Merged-chr16-94370310-3	chr16	94369826	94370826	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159620)	promoter-TSS (NM_001159620)	4.0	NM_001159619	56176.0	Mm.474449	NM_019543	ENSMUSG00000022940	Pigp	Dcrc|Dscr5	phosphatidylinositol glycan anchor biosynthesis, class P	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19461761-4	chr7	19461248	19462248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-3254.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	14.5	59.5	23.0	12.0	59.5	23.0
Merged-chr18-70530305-4	chr18	70529801	70530801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136090)	promoter-TSS (NM_001136090)	20.0	NM_001136090	26447.0	Mm.244352	NM_011972	ENSMUSG00000038425	Poli	Rad30b	polymerase (DNA directed), iota	protein-coding	90.0	342.5	310.0	91.0	342.5	244.5
Merged-chr5-124475434-4	chr5	124474933	124475933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030259, intron 1 of 3)	intron (NM_030259, intron 1 of 3)	2802.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167656839-4	chr2	167656400	167657400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145538, intron 1 of 5)	intron (NM_145538, intron 1 of 5)	4644.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109472329-4	chr11	109471877	109472877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028710)	promoter-TSS (NM_028710)	852.0	NM_134038	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43933897-4	chr1	43933406	43934406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310540)	promoter-TSS (NM_001310540)	-88.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3635454-2	chr8	3634954	3635954	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011503, exon 8 of 19)	exon (NM_011503, exon 8 of 19)	4345.0	NM_011503	20911.0	Mm.7247	NM_011503	ENSMUSG00000004626	Stxbp2	C79054|Munc-18-2|Munc-18b|Munc18b|Sxtbp2|Sxtp2|Unc18-2|Unc18b|muSec1	syntaxin binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127345889-8	chr7	127345363	127346363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146202)	promoter-TSS (NM_146202)	-549.0	NM_146202	233890.0	Mm.23031	NM_146202	ENSMUSG00000047371	Zfp768	BC026432|Znf768	zinc finger protein 768	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118229807-2	chr11	118229307	118230307	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-17065.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-66865339-2	chr10	66864839	66865839	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55045.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-100994452-4	chr3	100993955	100994955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167906, intron 8 of 8)	intron (NM_001167906, intron 8 of 8)	-24792.0	NM_001013026	74044.0	Mm.270961	NM_001013026	ENSMUSG00000033222	Ttf2	4632434F22Rik|8030447N19|AV218430	transcription termination factor, RNA polymerase II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94191302-4	chr8	94190811	94191811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	12222.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111655465-4	chr13	111654977	111655977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30701.0	NM_172593	218613.0	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94463600-2	chr10	94463100	94464100	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	MER58B|DNA|hAT-Charlie	-51257.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109193963-4	chr8	109193442	109194442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126329, intron 5 of 9)	intron (NR_126329, intron 5 of 9)	55803.0	NR_151498	105243282.0	Mm.203332	NR_151498		4922502B01Rik	2900056M07Rik	RIKEN cDNA 4922502B01 gene	ncRNA	0.0	11.0	2.5	7.5	15.0	8.0
Merged-chr11-98361443-4	chr11	98360941	98361941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021547, intron 1 of 14)	intron (NM_021547, intron 1 of 14)	3073.0	NM_021547	59045.0	Mm.265546	NM_021547	ENSMUSG00000018167	Stard3	Mln64|es64	START domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-123366910-2	chr7	123366410	123367410	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	3005.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-192078636-4	chr1	192078159	192079159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011633, intron 1 of 9)	intron (NM_011633, intron 1 of 9)	13940.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-75210815-4	chr1	75210307	75211307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011494)	promoter-TSS (NM_011494)	-22.0	NR_102731	20872.0	Mm.1155	NM_011494	ENSMUSG00000026201	Stk16	EDPK|Krct|MPSK|PKL12|TSF-1	serine/threonine kinase 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-85090221-3	chr17	85089725	85090725	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163624)	promoter-TSS (NM_001163624)	42.0	NM_145984	213760.0	Mm.259035	NM_145984	ENSMUSG00000024127	Prepl	2810457N15Rik|9530014L06Rik|D030028O16Rik|mKIAA0436	prolyl endopeptidase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32240276-4	chr18	32239771	32240771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133658)	promoter-TSS (NM_133658)	-60.0	NM_133658	13872.0	Mm.282335	NM_133658	ENSMUSG00000024382	Ercc3	BTF2 p89|Ercc-3|XPB	excision repair cross-complementing rodent repair deficiency, complementation group 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82635679-4	chr18	82635187	82636187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177832, intron 13 of 29)	RLTR22_Mur|LTR|ERVK	57047.0	NM_177832	329002.0	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-30304522-4	chr6	30303993	30304993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001169576)	promoter-TSS (NM_001169576)	46.0	NM_009459	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	4.5	2.0	3.5	0.0	2.0	2.0
Merged-chr10-57784848-4	chr10	57784345	57785345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021272)	promoter-TSS (NM_021272)	-78.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39458950-4	chr18	39458454	39459454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	28291.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	8.5	19.0	29.5	21.5	8.5	18.0
Merged-chr4-86580232-4	chr4	86579720	86580720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173400, exon 17 of 17)	3' UTR (NM_173400, exon 17 of 17)	4547.0	NM_178376	68441.0	Mm.31178	NM_178376	ENSMUSG00000070934	Rraga	1300010C19Rik|AI255374|FIP-1|RAGA	Ras-related GTP binding A	protein-coding	21.0	38.0	30.0	9.0	39.5	14.5
Merged-chr13-99187672-4	chr13	99187162	99188162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	2839.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	20.0	76.0	59.0	19.0	75.5	68.0
Merged-chr12-3981537-4	chr12	3981046	3982046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082483, intron 10 of 22)	intron (NM_001082483, intron 10 of 22)	26601.0	NM_001278583	18976.0	Mm.277996	NM_008895	ENSMUSG00000020660	Pomc	ACTH|BE|Beta-LPH|Clip|Gamma-LPH|Npp|Pomc-1|Pomc1|alpha-MSH|alphaMSH|beta-MSH|gamma-MSH	pro-opiomelanocortin-alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-14500540-4	chr9	14500052	14501052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023153)	promoter-TSS (NM_023153)	-67.0	NM_023153	66070.0	Mm.245938	NM_023153	ENSMUSG00000004096	Cwc15	0610040D20Rik|2900052N06Rik|Ed1|c11orf5|mED1	CWC15 spliceosome-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-10481133-8	chr10	10480654	10481654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44B|LTR|ERVK	-8840.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-81054275-4	chr3	81053773	81054773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	17857.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	46.5	69.5	72.5	57.5	88.5	64.0
Merged-chr19-25119891-2	chr19	25119391	25120391	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 15 of 47)	intron (NM_028785, intron 15 of 47)	-117084.0	NM_181404	107351.0	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	0.0	0.0	0.0	0.0	1.5	0.0
Merged-chr11-114899954-2	chr11	114899454	114900454	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_170758, intron 6 of 6)	intron (NM_170758, intron 6 of 6)	9913.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-51862279-4	chr7	51861768	51862768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001115087)	promoter-TSS (NM_001115087)	-1.0	NM_001115087	100040608.0	Mm.322643	NM_001115087	ENSMUSG00000092118	Fancf	A730016A17	Fanconi anemia, complementation group F	protein-coding	15.5	47.0	36.0	4.0	50.5	34.5
Merged-chr12-83520414-4	chr12	83519929	83520929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030246)	promoter-TSS (NM_030246)	-37.0	NM_030246	73828.0	Mm.38238	NM_030246	ENSMUSG00000021222	Dcaf4	1110018E21Rik|Wdr21	DDB1 and CUL4 associated factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102407556-4	chr11	102407060	102408060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026542)	promoter-TSS (NM_026542)	-43.0	NM_026542	68066.0	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184845924-4	chr1	184845407	184846407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133684)	promoter-TSS (NM_133684)	-60.0	NM_133684	67247.0	Mm.177724	NM_133684	ENSMUSG00000073481	Marc2	2810484M10Rik|Mosc2|mARC1	mitochondrial amidoxime reducing component 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25255438-4	chr2	25254935	25255935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252541)	promoter-TSS (NM_001252541)	-4.0	NM_177344	227615.0	Mm.213925	NM_177344	ENSMUSG00000078201	Tmem203	C730025P13Rik|Hbebp1	transmembrane protein 203	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96977821-4	chr11	96977328	96978328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080964)	promoter-TSS (NM_001080964)	-140.0	NM_001080964	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141552608-4	chr4	141552091	141553091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6429.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	3.0	21.5	3.0	5.0	20.0	0.0
Merged-chr6-115668245-4	chr6	115667722	115668722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029780, intron 1 of 16)	ORR1E|LTR|ERVL-MaLR	7666.0	NM_001356334	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-52097765-4	chr12	52097270	52098270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029760)	promoter-TSS (NM_029760)	24.0	NM_029760	76826.0	Mm.244781	NM_029760	ENSMUSG00000035142	Nubpl	2410170E07Rik	nucleotide binding protein-like	protein-coding	0.0	0.0	0.0	3.0	5.0	0.5
Merged-chr19-10304989-4	chr19	10304496	10305496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198114)	promoter-TSS (NM_198114)	-119.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-174440052-4	chr2	174439516	174440516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022325)	promoter-TSS (NM_022325)	-977.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0.0	1.5	1.0	4.5	7.5	1.5
Merged-chr13-113636108-4	chr13	113635625	113636625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17561.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3185115-4	chr11	3184616	3185616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 4 of 32)	intron (NM_030207, intron 4 of 32)	8347.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114444166-4	chr5	114443661	114444661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023556)	promoter-TSS (NM_023556)	-108.0	NM_001306205	17855.0	Mm.28088	NM_023556	ENSMUSG00000041939	Mvk	2310010A05Rik|AI256848|AI414037|MK	mevalonate kinase	protein-coding	1.5	0.0	1.0	0.0	2.5	1.5
Merged-chr11-62551089-4	chr11	62550590	62551590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002875)	promoter-TSS (NR_002875)	-81.0	NM_011664	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120458054-4	chr11	120457547	120458547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025560)	promoter-TSS (NM_025560)	23.0	NM_001356385	66431.0	Mm.45063	NM_025560	ENSMUSG00000039670	Oxld1	1810049H13Rik	oxidoreductase like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-58201476-4	chr14	58200974	58201974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	128788.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92421630-2	chr16	92421130	92422130	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-21552.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	1.0	1.0	1.0	1.0	0.5	0.5
Merged-chr7-90022192-2	chr7	90021734	90022734	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-6925.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-119370048-4	chr12	119369560	119370560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73350.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34171912-4	chr10	34171416	34172416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 2 of 5)	intron (NM_172508, intron 2 of 5)	35635.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-85084351-4	chr16	85083845	85084845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 3 of 15)	intron (NM_001198825, intron 3 of 15)	89362.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	14.0	4.5	2.5	13.5	6.0	2.5
Merged-chr3-100436859-4	chr3	100436362	100437362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040543, intron 2 of 2)	intron (NR_040543, intron 2 of 2)	10457.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-92101189-4	chr6	92100682	92101682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347342, intron 1 of 14)	intron (NM_001347342, intron 1 of 14)	8749.0	NM_001347342	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	2.5	6.0	9.0	2.0	8.0	9.5
Merged-chr9-108342524-4	chr9	108342018	108343018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3438.0	NM_001329527	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102981687-4	chr14	102981167	102982167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_039592)	TTS (NR_039592)	965.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-21679941-4	chr17	21679450	21680450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001354753)	promoter-TSS (NM_001354753)	73.0	NM_001354753	100310809.0	Mm.293030	NM_001354753		Gm10509	-	predicted gene 10509	protein-coding	18.0	67.5	74.5	5.0	36.0	28.0
Merged-chr1-131287056-4	chr1	131286563	131287563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081011, exon 23 of 23)	3' UTR (NM_001081011, exon 23 of 23)	-7500.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89553522-2	chr6	89553022	89554022	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025351, intron 4 of 7)	intron (NM_025351, intron 4 of 7)	42130.0	NM_025351	66098.0	Mm.20313	NM_025351	ENSMUSG00000030086	Chchd6	0710001P09Rik|1700021B03Rik	coiled-coil-helix-coiled-coil-helix domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-42053416-2	chr13	42052916	42053916	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 1 of 8)	intron (NM_007772, intron 1 of 8)	1395.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95674381-4	chr3	95673890	95674890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13527.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	47.5	99.5	75.0	51.5	103.0	81.5
Merged-chr11-87461938-4	chr11	87461436	87462436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	CpG	34345.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103239959-4	chr15	103239480	103240480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002885)	promoter-TSS (NR_002885)	-128.0	NM_001076789	12419.0	Mm.262059	NM_007626	ENSMUSG00000009575	Cbx5	2610029O15Rik|C75991|HP1|Hp1a|Hp1alpha	chromobox 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46645234-2	chr17	46644734	46645734	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316742)	promoter-TSS (NM_001316742)	846.0	NM_001357130	74764.0	Mm.279599	NM_029091	ENSMUSG00000003546	Klc4	1200014P03Rik|AA408085|AW146303|Knsl8	kinesin light chain 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145740224-4	chr2	145739719	145740719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 3 of 3)	intron (NR_033220, intron 3 of 3)	39024.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95016263-4	chr3	95015717	95016717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030074)	promoter-TSS (NM_030074)	-760.0	NM_001357863	78266.0	Mm.389478	NM_030074	ENSMUSG00000019338	Zfp687	4931408L03Rik|Znf687|mKIAA1441	zinc finger protein 687	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88422550-4	chr3	88422046	88423046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281795, intron 1 of 3)	intron (NM_001281795, intron 1 of 3)	2595.0	NM_178696	229517.0	Mm.301740	NM_178696	ENSMUSG00000050144	Slc25a44	6720482A19|B430110G05Rik	solute carrier family 25, member 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145774488-4	chr4	145773984	145774984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7059.0	NM_001083918	666532.0	Mm.392861	NM_001083918	ENSMUSG00000067916	Zfp991	Gm13139	zinc finger protein 991	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26550040-4	chr2	26549534	26550534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31022.0	NM_178444	353156.0	Mm.268933	NM_178444	ENSMUSG00000026921	Egfl7	VE-statin|Zneu1	EGF-like domain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-92067777-2	chr6	92067277	92068277	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172731, intron 15 of 20)	intron (NM_172731, intron 15 of 20)	-23641.0	NM_011630	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128797556-2	chr6	128797061	128798061	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8920.0	NM_008527	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	9.5	2.5	0.0	5.0	0.0	3.5
Merged-chr2-144010524-4	chr2	144010090	144011090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133626, intron 1 of 2)	CpG	673.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43920763-4	chr7	43920260	43921260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13011.0	NM_174865	317652.0	Mm.389896	NM_174865	ENSMUSG00000055193	Klk15	-	kallikrein related-peptidase 15	protein-coding	68.0	73.5	43.0	70.5	81.0	43.0
Merged-chr7-28675230-4	chr7	28674700	28675700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17649.0	NM_207238	233040.0	Mm.116116	NM_207238	ENSMUSG00000037463	Fbxo27	E130008B10Rik|FBG5|Gm161	F-box protein 27	protein-coding	40.5	81.0	63.0	83.0	80.0	83.0
Merged-chr9-124053721-4	chr9	124053230	124054230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31759.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-130542279-4	chr10	130541745	130542745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44866.0	NM_001103366	625131.0	Mm.469844	NM_001103366	ENSMUSG00000091511	Vmn2r87	EG625131	vomeronasal 2, receptor 87	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127449194-4	chr7	127448717	127449717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175163)	promoter-TSS (NM_175163)	-59.0	NM_175163	71131.0	Mm.474533	NM_175163	ENSMUSG00000048921	Zfp689	4933416E05Rik|Znf689	zinc finger protein 689	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23882317-4	chr18	23881816	23882816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 6 of 7)	intron (NM_001162941, intron 6 of 7)	-72372.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83067354-4	chr11	83066855	83067855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011408, intron 1 of 1)	RLTR11A|LTR|ERVK	2243.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-77546737-4	chr14	77546236	77547236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253759, intron 7 of 19)	intron (NM_001253759, intron 7 of 19)	-39868.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	28.5	40.0	32.5	18.5	44.0	31.5
Merged-chr2-153741211-4	chr2	153740719	153741719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007896)	promoter-TSS (NM_007896)	-68.0	NM_007896	13589.0	Mm.143877	NM_007896	ENSMUSG00000027479	Mapre1	5530600P05Rik|AI462499|AI504412|AW260097|BIM1p|D2Ertd459e|Eb1	microtubule-associated protein, RP/EB family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4678711-2	chr16	4678211	4679211	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030205, intron 1 of 27)	intron (NM_030205, intron 1 of 27)	1009.0	NM_030205	78885.0	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44881438-4	chr9	44880933	44881933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357549)	promoter-TSS (NM_001357549)	-159.0	NM_001081049	214162.0	Mm.2389	NM_001081049	ENSMUSG00000002028	Kmt2a	6430520K01|ALL-1|All1|Cxxc7|HRX|HTRX1|Mll|Mll1|mKIAA4050	lysine (K)-specific methyltransferase 2A	protein-coding	0.5	6.5	9.5	1.0	10.0	8.5
Merged-chr19-3724114-2	chr19	3723614	3724614	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	15703.0	NM_001358257	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166181134-6	chr2	166180603	166181603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25420.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46680974-4	chr17	46680466	46681466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027910)	promoter-TSS (NM_027910)	-20.0	NR_102392	17256.0	Mm.329083	NM_010787	ENSMUSG00000002768	Mea1	Mea-1	male enhanced antigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22002768-4	chr9	22002284	22003284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029939)	promoter-TSS (NM_029939)	-150.0	NM_029939	77609.0	Mm.159953	NM_029939	ENSMUSG00000039632	Ccdc151	AI644415|C330001K17Rik|b2b1885Clo	coiled-coil domain containing 151	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135568746-4	chr5	135568309	135569309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	4240.0	NM_019577	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	41.5	98.0	46.0	57.0	135.5	105.0
Merged-chr18-35119005-4	chr18	35118548	35119548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009818, intron 1 of 17)	CpG	136.0	NM_009818	12385.0	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96460240-4	chr15	96459770	96460770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028148, intron 1 of 14)	CpG	573.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47175003-5	chr17	47174495	47175495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 3 of 19)	intron (NM_001097623, intron 3 of 19)	34053.0	NM_001097623	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6047623-2	chr19	6047123	6048123	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164709, intron 1 of 15)	intron (NM_001164709, intron 1 of 15)	478.0	NM_001164709	74126.0	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	16.5	90.0	75.0	26.0	135.0	62.0
Merged-chr17-69382840-4	chr17	69382352	69383352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356283)	promoter-TSS (NM_001356283)	-323.0	NM_001356283	22666.0	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110732797-4	chr9	110732266	110733266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083936, intron 1 of 13)	GC_rich|Low_complexity|Low_complexity	9844.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33745614-4	chr16	33745090	33746090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 10 of 14)	intron (NM_175256, intron 10 of 14)	-48447.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27623545-4	chr17	27623053	27624053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019837)	promoter-TSS (NM_019837)	-101.0	NM_019837	56409.0	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	26.5	41.0	29.5	9.5	39.5	16.5
Merged-chr7-29228366-4	chr7	29227865	29228865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033525, intron 1 of 2)	intron (NM_001033525, intron 1 of 2)	4157.0	NM_001033525	52150.0	Mm.24877	NM_001033525	ENSMUSG00000046410	Kcnk6	D7Ertd764e|Toss|Twik2	potassium inwardly-rectifying channel, subfamily K, member 6	protein-coding	18.5	113.5	52.5	48.0	78.5	65.0
Merged-chr17-31801025-3	chr17	31800517	31801517	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	54787.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91415743-7	chr16	91415233	91416233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008349, intron 4 of 6)	intron (NM_008349, intron 4 of 6)	9498.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55473616-2	chr12	55473116	55474116	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19031.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120609393-4	chr2	120608913	120609913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025475)	promoter-TSS (NM_025475)	31.0	NM_025475	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-99241825-4	chr6	99241331	99242331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	24684.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74672650-4	chr15	74672158	74673158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276684)	promoter-TSS (NM_001276684)	-88.0	NM_018790	11838.0	Mm.491310	NM_018790	ENSMUSG00000022602	Arc	Arc3.1|C86064|arg3.1|mArc	activity regulated cytoskeletal-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80206825-4	chr17	80206316	80207316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360435, intron 1 of 6)	CpG	489.0	NM_001195486	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50529003-4	chr16	50528525	50529525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040379, intron 1 of 5)	CpG	523.0	NR_040379	619312.0	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79030823-4	chr15	79030343	79031343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161712)	promoter-TSS (NM_001161712)	-31.0	NM_013847	26912.0	Mm.237085	NM_013847	ENSMUSG00000006378	Gcat	AI526977|Kbl	glycine C-acetyltransferase (2-amino-3-ketobutyrate-coenzyme A ligase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-103900192-4	chr13	103899698	103900698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005868, intron 1 of 26)	B4A|SINE|B4	20388.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26978409-1	chr8	26977909	26978909	+	1000.0	f0_balb.idr	intron (NM_001110508, intron 2 of 2)	CpG-13923	1073.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-45159921-2	chr16	45159421	45160421	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356366, intron 1 of 10)	intron (NM_001356366, intron 1 of 10)	1092.0	NM_026402	67841.0	Mm.41775	NM_026402	ENSMUSG00000022663	Atg3	2610016C12Rik|APG3|Apg3l|Atg3l|PC3-96	autophagy related 3	protein-coding	5.0	7.5	9.0	15.5	22.0	4.5
Merged-chr4-155839652-3	chr4	155839151	155840151	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024263)	promoter-TSS (NM_024263)	-29.0	NM_024263	74761.0	Mm.159028	NM_024263	ENSMUSG00000029070	Mxra8	1200013A08Rik|1700095D18Rik|AI131686|Asp3|Dicam	matrix-remodelling associated 8	protein-coding	7.5	17.5	11.5	30.5	72.5	62.5
Merged-chr7-135650250-4	chr7	135649718	135650718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015548, intron 2 of 2)	intron (NR_015548, intron 2 of 2)	-1681.0	NM_001316681	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-59011876-4	chr6	59011395	59012395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153574, intron 1 of 17)	intron (NM_153574, intron 1 of 17)	12607.0	NM_153574	58909.0	Mm.28813	NM_153574	ENSMUSG00000037709	Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34051813-4	chr13	34051269	34052269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026512, intron 4 of 6)	intron (NM_026512, intron 4 of 6)	14128.0	NM_026512	68021.0	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	1.0	8.5	2.5	5.0	13.5	10.0
Merged-chr2-164943077-4	chr2	164942583	164943583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5136.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	8.5	4.0	5.0	0.0	36.5	6.0
Merged-chr15-79927839-4	chr15	79927346	79928346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144811, intron 2 of 6)	CpG	4800.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	81.0	119.5	87.0	65.0	115.5	113.0
Merged-chr4-128707616-4	chr4	128707121	128708121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 2 of 14)	intron (NM_018774, intron 2 of 14)	18883.0	NM_018774	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33836808-4	chr16	33836307	33837307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 1 of 14)	intron (NM_001145884, intron 1 of 14)	7142.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-42976312-4	chr13	42975822	42976822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005740, intron 2 of 12)	MIR|SINE|MIR	110075.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	9.0	0.0	0.0	2.0	8.5	10.0
Merged-chr1-60913344-6	chr1	60912827	60913827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009843, exon 3 of 4)	exon (NM_009843, exon 3 of 4)	4302.0	NM_001281976	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128133847-4	chr7	128133351	128134351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021334, intron 8 of 29)	intron (NM_021334, intron 8 of 29)	4283.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101119982-4	chr11	101119489	101120489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134024)	promoter-TSS (NM_134024)	-142.0	NM_134024	103733.0	Mm.479145	NM_134024	ENSMUSG00000035198	Tubg1	1500010O08Rik|AI451582|AI503389|Tubg	tubulin, gamma 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-75721159-4	chr12	75720657	75721657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030750, intron 2 of 2)	intron (NM_030750, intron 2 of 2)	14572.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24007648-4	chr17	24007177	24008177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9577.0	NM_133731	70835.0	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	110.5	233.5	151.5	79.0	191.5	113.0
Merged-chr19-43940194-4	chr19	43939685	43940685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028029)	promoter-TSS (NM_028029)	13.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	0.0	6.5	2.5	0.0	4.0	0.0
Merged-chr12-75669650-4	chr12	75669167	75670167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028203)	promoter-TSS (NM_028203)	-130.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138085102-4	chr5	138084606	138085606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029869)	promoter-TSS (NM_029869)	22.0	NM_029869	74570.0	Mm.213114	NM_029869	ENSMUSG00000029729	Zkscan1	5930429A01Rik|9130423L19Rik|9230118B16Rik|AI646829|AI788588|C87323|KOX18|PHZ-37|ZNF139	zinc finger with KRAB and SCAN domains 1	protein-coding	0.0	1.5	7.0	1.5	1.5	2.5
Merged-chr3-9005706-4	chr3	9005198	9006198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025263)	promoter-TSS (NM_001025263)	-975.0	NM_001357075	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	92.0	267.5	181.0	114.0	260.5	223.0
Merged-chr9-61965728-4	chr9	61965253	61966253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 5 of 7)	intron (NM_028748, intron 5 of 7)	-18954.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83955515-4	chr8	83955009	83956009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024184)	promoter-TSS (NM_024184)	-185.0	NM_024184	66929.0	Mm.29680	NM_024184	ENSMUSG00000005470	Asf1b	1700003K02Rik|AA409591	anti-silencing function 1B histone chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-77854108-4	chr14	77853620	77854620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025384, intron 2 of 5)	intron (NM_025384, intron 2 of 5)	20797.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	96.5	186.0	124.0	100.0	244.5	182.5
Merged-chr3-40949694-4	chr3	40949179	40950179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040399)	promoter-TSS (NM_001040399)	-952.0	NM_001040399	214048.0	Mm.46782	NM_027663	ENSMUSG00000025762	Larp1b	1700108L22Rik|4933421B21Rik|AA690246|Larp2	La ribonucleoprotein domain family, member 1B	protein-coding	3.0	25.5	2.5	0.0	0.0	0.0
Merged-chr12-55475620-2	chr12	55475120	55476120	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	17027.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29717034-4	chr17	29716535	29717535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163741)	promoter-TSS (NM_001163741)	-18.0	NM_001163741	68597.0	Mm.390979	NM_026782	ENSMUSG00000024018	Ccdc167	1110021J02Rik	coiled-coil domain containing 167	protein-coding	2.0	12.5	3.5	1.5	2.0	1.0
Merged-chr15-73185372-4	chr15	73184833	73185833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153178)	promoter-TSS (NM_153178)	-386.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120873867-1	chr10	120873367	120874367	+	1000.0	f1_balb.idr	intron (NM_177092, intron 1 of 6)	intron (NM_177092, intron 1 of 6)	16238.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	0.0	0.0	1.5	4.0	1.0	0.0
Merged-chr1-67398202-4	chr1	67397711	67398711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR1a|LTR|Gypsy	275184.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-133124298-4	chr7	133123812	133124812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009980)	promoter-TSS (NM_009980)	-829.0	NM_009980	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54956082-4	chr11	54955576	54956576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001199275, exon 2 of 19)	5' UTR (NM_001199275, exon 2 of 19)	6864.0	NM_021327	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-118465117-4	chr5	118464626	118465626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95593.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57722571-4	chr10	57722078	57723078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008863, intron 4 of 5)	intron (NM_008863, intron 4 of 5)	-62345.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117830617-4	chr11	117830126	117831126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027827, intron 2 of 10)	intron (NM_027827, intron 2 of 10)	-4612.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-56634525-4	chr13	56634037	56635037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155548, intron 12 of 16)	intron (NR_155548, intron 12 of 16)	24951.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19933693-4	chr7	19933174	19934174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12531.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-51501497-4	chr1	51500994	51501994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23095.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152847924-4	chr2	152847418	152848418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001141976)	promoter-TSS (NM_001141976)	-46.0	NM_001141975	72119.0	Mm.407737	NM_028109	ENSMUSG00000027469	Tpx2	2610005B21Rik|DIL2|REPP86|p100	TPX2, microtubule-associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-63501337-3	chr17	63500838	63501838	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015794)	promoter-TSS (NM_015794)	-758.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-92055513-4	chr2	92055000	92056000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-31330.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-59012059-4	chr12	59011531	59012531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009147)	promoter-TSS (NM_009147)	-14.0	NM_001361956	20334.0	Mm.491137	NM_009147	ENSMUSG00000020986	Sec23a	Msec23|Sec23r	SEC23 homolog A, COPII coat complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128780375-4	chr10	128779881	128780881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10529.0	NM_001164197	58223.0	Mm.131266	NM_021412	ENSMUSG00000025355	Mmp19	-	matrix metallopeptidase 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99214667-4	chr5	99214170	99215170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38257.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	23.5	29.5	27.5	23.5	30.0	27.0
Merged-chr1-72429399-4	chr1	72428900	72429900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045533, intron 3 of 3)	intron (NM_001045533, intron 3 of 3)	107164.0	NM_001045533	381270.0	Mm.337023	NM_001045533	ENSMUSG00000039372	March4	BC056494|mKIAA1399	membrane-associated ring finger (C3HC4) 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111946881-4	chr12	111946355	111947355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2373.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36071782-2	chr1	36071282	36072282	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	3382.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103102193-2	chr15	103101693	103102693	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	44635.0	NR_045743	432989.0	Mm.383979	NR_045743	ENSMUSG00000097003	D930007P13Rik	-	Riken cDNA D930007P13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85697686-4	chr11	85697197	85698197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	22047.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-62483263-4	chr1	62482760	62483760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081050, intron 20 of 22)	intron (NM_001081050, intron 20 of 22)	-220057.0	NM_001077406	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153198701-4	chr2	153198218	153199218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 13 of 17)	intron (NM_133847, intron 13 of 17)	26723.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	1.0	26.5	10.0	3.0	24.0	10.0
Merged-chr10-17660961-4	chr10	17660450	17661450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62278.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43138543-4	chr17	43138029	43139029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19762.0	NR_045155	545207.0	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	74.0	139.5	95.0	77.0	145.0	101.0
Merged-chr1-23433801-4	chr1	23433304	23434304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3b|LINE|CR1	-50629.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	10.0	14.0	8.5	4.5	24.0	18.5
Merged-chr10-21608639-4	chr10	21608134	21609134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027968, intron 2 of 2)	intron (NR_027968, intron 2 of 2)	15489.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	14.0	51.0	50.0	18.5	45.5	50.5
Merged-chr1-131015564-4	chr1	131015065	131016065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4280.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118655101-4	chr9	118654590	118655590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 5 of 27)	intron (NM_133721, intron 5 of 27)	48381.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	12.5	96.0	60.0	26.0	64.0	57.5
Merged-chr5-135369962-4	chr5	135369459	135370459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145414)	promoter-TSS (NM_145414)	6.0	NM_145414	100609.0	Mm.281189	NM_145414	ENSMUSG00000000916	Nsun5	9830109N13Rik|AI326939|Nol1r|Wbscr20|Wbscr20a	NOL1/NOP2/Sun domain family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31452412-4	chr5	31451940	31452940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172993)	promoter-TSS (NM_172993)	4.0	NM_001360000	269639.0	Mm.259127	NM_172993	ENSMUSG00000062761	Zfp512	2500002M11Rik|AI450173|D230008H22|Znf512	zinc finger protein 512	protein-coding	12.0	8.5	11.0	4.5	19.5	10.5
Merged-chr5-92504822-1	chr5	92504322	92505322	+	1000.0	f0_c57.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	835.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54770588-4	chr14	54770063	54771063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	11323.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	141.0	409.5	250.0	64.0	180.5	107.5
Merged-chr11-63014850-4	chr11	63014352	63015352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-10718.0	NR_126547	74884.0	Mm.363520	NR_126547	ENSMUSG00000087604	Cdrt4os1	4930452L02Rik	CMT1A duplicated region transcript 4, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43925802-4	chr4	43925234	43926234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016678, intron 12 of 20)	intron (NM_016678, intron 12 of 20)	-31968.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	1.0	4.0	3.0	0.5	2.5	1.5
Merged-chr6-82824023-1	chr6	82823523	82824523	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-49569.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	13.5	35.0	14.5	6.5	17.0	18.0
Merged-chr3-135825297-1	chr3	135824797	135825797	+	1000.0	f0_balb.idr	promoter-TSS (NM_001135150)	promoter-TSS (NM_001135150)	18.0	NM_026228	67547.0	Mm.30239	NM_026228	ENSMUSG00000053897	Slc39a8	4933419D20Rik|AA986696|BIGM103|ZIP-8|Zip8	solute carrier family 39 (metal ion transporter), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-52528629-2	chr5	52528129	52529129	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37677.0	NM_001310604	246316.0	Mm.44721	NM_144945	ENSMUSG00000039252	Lgi2	mKIAA1916	leucine-rich repeat LGI family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32565356-4	chr11	32564855	32565855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	32089.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0.0	12.5	10.0	1.0	6.0	7.5
Merged-chr9-96483842-4	chr9	96483346	96484346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5171.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	3.0	0.0	0.0	1.5	8.5	0.5
Merged-chr1-166002817-4	chr1	166002301	166003301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011137)	promoter-TSS (NM_011137)	-167.0	NM_198932	18986.0	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70207271-4	chr9	70206758	70207758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181072)	promoter-TSS (NM_181072)	-92.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103333419-4	chr15	103332914	103333914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013866, intron 1 of 7)	intron (NM_013866, intron 1 of 7)	924.0	NM_001356627	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51561235-4	chr3	51560746	51561746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080793)	promoter-TSS (NM_080793)	-423.0	NM_080793	73251.0	Mm.192111	NM_080793	ENSMUSG00000037111	Setd7	1600028F23Rik|H3K4MT|KMT7|Set7|Set7/9|mKIAA1717	SET domain containing (lysine methyltransferase) 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66062589-4	chr5	66062112	66063112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	MIRb|SINE|MIR	35567.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	16.0	19.5	32.0	8.5	25.5	37.5
Merged-chr7-29816034-4	chr7	29815532	29816532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145880)	promoter-TSS (NM_001145880)	-40.0	NM_146185	233056.0	Mm.224766	NM_146185	ENSMUSG00000011427	Zfp790	6330581L23Rik	zinc finger protein 790	protein-coding	11.0	29.0	25.0	14.0	30.5	23.5
Merged-chr7-16173651-2	chr7	16173151	16174151	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1744.0	NM_001277988	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	0.0	0.0	0.0	0.0	2.0	2.0
Merged-chr11-86807763-4	chr11	86807289	86808289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026191)	promoter-TSS (NM_026191)	-129.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88902287-4	chr6	88901779	88902779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011906)	promoter-TSS (NM_011906)	28.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85840752-4	chr8	85840267	85841267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199446)	promoter-TSS (NM_199446)	182.0	NM_028007	71927.0	Mm.61018	NM_028007	ENSMUSG00000031703	Itfg1	2310047C21Rik|AI314457|Cda08|D8Wsu49e	integrin alpha FG-GAP repeat containing 1	protein-coding	7.5	4.0	4.0	3.0	10.0	4.0
Merged-chr1-88095082-4	chr1	88094596	88095596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201642)	promoter-TSS (NM_201642)	95.0	NM_201642	394432.0	Mm.300095	NM_201642	ENSMUSG00000090124	Ugt1a7c	A10'|A13|Ugt1a10	UDP glucuronosyltransferase 1 family, polypeptide A7C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101841440-4	chr13	101840936	101841936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73219.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-46915704-4	chr14	46915200	46916200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	32735.0	NM_001037221	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	62.0	150.5	113.0	74.5	98.0	79.5
Merged-chr13-47251306-4	chr13	47250808	47251808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	57305.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	1.0	14.0	7.0	1.0	2.0	3.0
Merged-chr14-50830110-4	chr14	50829600	50830600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009351, intron 45 of 54)	G-rich|Low_complexity|Low_complexity	22184.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	11.5	4.0	7.0	2.0	1.5	0.0
Merged-chr15-79209251-4	chr15	79208719	79209719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_029470, intron 2 of 4)	intron (NR_029470, intron 2 of 4)	-19954.0	NM_008837	18693.0	Mm.259464	NM_008837	ENSMUSG00000068206	Pick1	Prkcabp	protein interacting with C kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71633478-4	chr6	71632974	71633974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173001)	promoter-TSS (NM_173001)	-557.0	NM_001362200	104263.0	Mm.260479	NM_173001	ENSMUSG00000053470	Kdm3a	1700105C21Rik|C230043E16Rik|JHDM2a|Jmjd1|Jmjd1a|KDM2A|TGSA|Tsga	lysine (K)-specific demethylase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-78350969-4	chr12	78350457	78351457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172952, intron 2 of 23)	LSU-rRNA_Hsa|rRNA|rRNA	124302.0	NM_145965	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72100020-2	chr6	72099520	72100520	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	MTD|LTR|ERVL-MaLR	2412.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27670295-4	chr15	27669802	27670802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	11240.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83802724-4	chr7	83802225	83803225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7886.0	NM_029335	75556.0	Mm.17649	NM_029335	ENSMUSG00000011154	Cfap161	1700026D08Rik|AW047638|AW551802	cilia and flagella associated protein 161	protein-coding	21.5	28.5	21.0	25.5	28.5	23.5
Merged-chr1-137921781-4	chr1	137921300	137922300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44655.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69538108-4	chr12	69537548	69538548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44980.0	NM_001033236	207965.0	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	11.5	9.0	0.5	0.0	1.5	1.5
Merged-chr15-76069841-4	chr15	76069334	76070334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134089)	promoter-TSS (NM_134089)	-50.0	NM_001310542	105782.0	Mm.25568	NM_134089	ENSMUSG00000022568	Scrib	AI118201|CRIB|Crc|SCRIB1|Scrb1|mKIAA0147|vartul	scribbled planar cell polarity	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-41499465-4	chr7	41498972	41499972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033530, exon 1 of 4)	5' UTR (NM_001033530, exon 1 of 4)	418.0	NM_001033530	101835.0	Mm.370336	NM_001033530	ENSMUSG00000074166	AW146154	AI451288	expressed sequence AW146154	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32081507-4	chr2	32081016	32082016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151493, intron 2 of 5)	intron (NR_151493, intron 2 of 5)	2189.0	NM_175511	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8597094-4	chr11	8596606	8597606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 3 of 30)	intron (NM_001083587, intron 3 of 30)	67429.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-130318939-4	chr10	130318429	130319429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3923.0	NM_183264	67596.0	Mm.131264	NM_183264	ENSMUSG00000034833	Tespa1	5830405N20Rik|A430001F24Rik|AI450549	thymocyte expressed, positive selection associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-67275538-4	chr14	67275048	67276048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360202, intron 6 of 15)	intron (NM_001360202, intron 6 of 15)	39163.0	NM_001037931	628416.0	Mm.390723	NM_001037931		Gm6878	EG628416	predicted gene 6878	protein-coding	2.5	1.5	7.0	9.0	3.5	5.0
Merged-chr2-156312587-4	chr2	156312086	156313086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001316755, exon 1 of 10)	exon (NM_001316755, exon 1 of 10)	113.0	NM_001316755	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	323.5	717.5	517.5	286.0	602.0	452.0
Merged-chr4-156109877-4	chr4	156109376	156110376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145557)	promoter-TSS (NM_145557)	-122.0	NM_145557	230996.0	Mm.318925	NM_145557	ENSMUSG00000059939	9430015G10Rik	-	RIKEN cDNA 9430015G10 gene	protein-coding	19.0	68.5	57.0	1.5	33.0	21.5
Merged-chr3-159840298-4	chr3	159839789	159840789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356350, intron 1 of 12)	intron (NM_001356350, intron 1 of 12)	639.0	NM_001356350	68151.0	Mm.6766	NM_026582	ENSMUSG00000028173	Wls	5031439A09Rik|AI173978|AI987742|EVI|Gpr177	wntless WNT ligand secretion mediator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-38819263-4	chr19	38818776	38819776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021315)	promoter-TSS (NM_021315)	-39.0	NM_021315	57753.0	Mm.86482	NM_021315	ENSMUSG00000024999	Noc3l	AF233884|Fad24	NOC3 like DNA replication regulator	protein-coding	5.5	40.0	7.5	11.5	35.5	16.5
Merged-chr8-115307634-4	chr8	115307136	115308136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019573, intron 8 of 8)	intron (NM_019573, intron 8 of 8)	399258.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-83324289-4	chr4	83323799	83324799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027238)	promoter-TSS (NM_027238)	-110.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46056499-4	chr19	46056032	46057032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081214)	promoter-TSS (NM_001081214)	-7.0	NM_001346801	226169.0	Mm.2415	NM_145504	ENSMUSG00000055491	Pprc1	A930018M19|BC013720|PRC|mKIAA0595	peroxisome proliferative activated receptor, gamma, coactivator-related 1	protein-coding	1.5	5.5	0.5	0.0	8.5	4.0
Merged-chr5-121545991-4	chr5	121545483	121546483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010765)	promoter-TSS (NM_010765)	-91.0	NM_010765	17165.0	Mm.272206	NM_010765	ENSMUSG00000029454	Mapkapk5	MK5|PRAK	MAP kinase-activated protein kinase 5	protein-coding	33.0	51.5	33.0	14.5	68.0	55.5
Merged-chr6-145342536-2	chr6	145342037	145343037	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45088.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	110.5	328.0	204.5	93.0	268.0	169.0
Merged-chr14-52104250-4	chr14	52103747	52104747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360176)	promoter-TSS (NM_001360176)	-226.0	NM_001360180	15381.0	Mm.427321	NM_016884	ENSMUSG00000060373	Hnrnpc	AL022939|D14Wsu171e|Hnrpc|Hnrpc1|Hnrpc2|hnRNPC1|hnRNPC2|hnrnp-C	heterogeneous nuclear ribonucleoprotein C	protein-coding	151.5	239.0	214.0	135.0	291.0	254.0
Merged-chr7-27838564-4	chr7	27838076	27839076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011762)	promoter-TSS (NM_011762)	-8.0	NM_011762	22717.0	Mm.379046	NM_011762	ENSMUSG00000078779	Zfp59	Mfg-2|Mfg2	zinc finger protein 59	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116122944-4	chr3	116122457	116123457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011693, intron 4 of 8)	intron (NM_011693, intron 4 of 8)	6731.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	19.0	54.0	31.0	18.5	56.0	31.0
Merged-chr7-98415665-4	chr7	98415158	98416158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24758.0	NM_001130693	14918.0	Mm.389928	NM_001034890	ENSMUSG00000074003	Gucy2d	-	guanylate cyclase 2d	protein-coding	6.0	4.0	10.0	5.5	12.5	11.5
Merged-chr15-66555560-4	chr15	66555053	66556053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172514, intron 3 of 9)	intron (NM_172514, intron 3 of 9)	5493.0	NM_172514	213068.0	Mm.132299	NM_172514	ENSMUSG00000036944	Tmem71	AI661017|E430024D12	transmembrane protein 71	protein-coding	2.5	1.5	3.5	5.5	3.0	5.0
Merged-chr5-130255004-2	chr5	130254504	130255504	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178897)	promoter-TSS (NM_178897)	526.0	NM_023248	66711.0	Mm.280484	NM_023248	ENSMUSG00000025337	Sbds	4733401P19Rik|AI836084|CGI-97|SDS	SBDS ribosome maturation factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113773933-4	chr5	113773454	113774454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025526, intron 1 of 4)	intron (NM_025526, intron 1 of 4)	1142.0	NM_025526	66383.0	Mm.29497	NM_025526	ENSMUSG00000025825	Iscu	2310020H20Rik|AA407971|Nifu|Nifun	iron-sulfur cluster assembly enzyme	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21106473-4	chr19	21105987	21106987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_126458)	TTS (NR_126458)	1777.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	6.0	13.5	16.0	10.0	15.0	39.0
Merged-chr2-51149189-4	chr2	51148678	51149678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028810)	promoter-TSS (NM_028810)	-67.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	7.0	18.5	7.5	8.0	25.5	8.0
Merged-chr4-105162866-4	chr4	105162348	105163348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 1 of 5)	intron (NM_080555, intron 1 of 5)	5501.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	9.5	15.0	7.0	2.0	6.5	1.0
Merged-chr13-34709167-4	chr13	34708652	34709652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30490.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55493497-2	chr12	55492997	55493997	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010907)	promoter-TSS (NM_010907)	-850.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-39197166-4	chr16	39196655	39197655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8205.0	NR_153800	102640746.0		NR_153800		Gm36742	-	predicted gene, 36742	ncRNA	36.0	16.5	27.0	4.0	15.5	15.0
Merged-chr6-84583580-4	chr6	84583081	84584081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177713, intron 3 of 6)	intron (NM_001177713, intron 3 of 6)	10229.0	NM_175475	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42005775-4	chr19	42005247	42006247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	L3|LINE|CR1	23984.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	12.5	100.0	47.0	31.5	63.0	54.0
Merged-chr6-129495096-4	chr6	129494592	129495592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138648, intron 4 of 7)	MT2A|LTR|ERVL	12073.0	NM_138648	108078.0	Mm.293626	NM_138648	ENSMUSG00000030162	Olr1	LOX-1|SR-EI|Scare1	oxidized low density lipoprotein (lectin-like) receptor 1	protein-coding	0.0	2.5	1.0	0.0	9.5	0.5
Merged-chr3-103728147-4	chr3	103727678	103728678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9823.0	NM_133859	99543.0	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	1.5	3.0	0.0	3.0	3.5	0.5
Merged-chr1-162574761-4	chr1	162574244	162575244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356527, intron 2 of 7)	intron (NM_001356527, intron 2 of 7)	3916.0	NM_016796	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	41.5	81.0	41.5	35.5	50.0	52.0
Merged-chr12-84361924-4	chr12	84361414	84362414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172581)	promoter-TSS (NM_172581)	-54.0	NM_172582	217707.0	Mm.280062	NM_172582	ENSMUSG00000021235	Coq6	5930427M12Rik|AW742344	coenzyme Q6 monooxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-130709330-4	chr3	130708804	130709804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025509, exon 1 of 4)	exon (NM_025509, exon 1 of 4)	140.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-21848239-8	chr4	21847745	21848745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028384, exon 1 of 1)	non-coding (NR_028384, exon 1 of 1)	203.0	NR_028384	67735.0	Mm.391650	NR_028384		4930528A17Rik	-	RIKEN cDNA 4930528A17 gene	ncRNA	32.0	92.5	68.0	39.5	75.5	76.0
Merged-chr3-22073322-4	chr3	22072845	22073845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-3307.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105989666-2	chr1	105989138	105990138	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122676)	promoter-TSS (NM_001122676)	644.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	220.0	533.5	387.0	232.5	500.5	423.5
Merged-chr17-46074090-4	chr17	46073584	46074584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36920.0	NM_026768	68565.0	Mm.287443	NM_026768	ENSMUSG00000023967	Mrps18a	1110004O20Rik|C79712	mitochondrial ribosomal protein S18A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118646011-4	chr9	118645516	118646516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	39307.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	23.5	30.5	48.5	9.5	23.5	36.5
Merged-chr15-13391552-4	chr15	13391037	13392037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-217862.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	5.5	2.5	5.0	1.5	3.5	1.0
Merged-chr15-78624457-2	chr15	78623957	78624957	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27410.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr4-84372629-4	chr4	84372120	84373120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172870, intron 4 of 5)	PB1D7|SINE|Alu	302466.0	NM_172870	242509.0	Mm.190774	NM_172870	ENSMUSG00000028487	Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding	7.0	3.0	19.5	6.0	9.0	2.0
Merged-chr2-117852634-4	chr2	117852135	117853135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040631, intron 2 of 5)	intron (NR_040631, intron 2 of 5)	30707.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88142327-4	chr3	88141845	88142845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133665)	promoter-TSS (NM_133665)	-27.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117828420-4	chr11	117827922	117828922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027827, intron 2 of 10)	URR1B|DNA|hAT-Charlie	-2408.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-4867751-4	chr1	4867243	4868243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159750, intron 2 of 9)	RMER6B|LTR|ERVK	9415.0	NM_001159751	21399.0	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136656443-4	chr6	136655945	136656945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025806, intron 1 of 10)	intron (NM_025806, intron 1 of 10)	5448.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	57.5	188.5	109.0	46.5	126.0	66.0
Merged-chr9-69989908-4	chr9	69989400	69990400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008238, intron 1 of 9)	CpG	434.0	NM_001008238	12175.0	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-73113466-4	chr9	73112941	73113941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198609)	promoter-TSS (NM_198609)	-28.0	NM_198609	225215.0	Mm.379366	NM_198609	ENSMUSG00000032215	Rsl24d1	2410159K22Rik	ribosomal L24 domain containing 1	protein-coding	21.5	39.0	33.5	36.5	48.0	50.0
Merged-chr19-53038694-4	chr19	53038189	53039189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133216)	promoter-TSS (NM_133216)	-35.0	NM_133216	170750.0	Mm.99776	NM_133216	ENSMUSG00000025027	Xpnpep1	D230045I08Rik|sAMP	X-prolyl aminopeptidase (aminopeptidase P) 1, soluble	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-114401229-7	chr9	114400724	114401724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009752, exon 1 of 16)	exon (NM_009752, exon 1 of 16)	129.0	NM_001200002	100504715.0	Mm.290516	NM_001200002	ENSMUSG00000079260	Tmppe	-	transmembrane protein with metallophosphoesterase domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96414790-4	chr3	96414288	96415288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_001579)	promoter-TSS (NR_001579)	45.0	NR_001579	21748.0		NR_001579	ENSMUSG00000064796	Terc	mTER|mTR	telomerase RNA component	ncRNA	3.5	0.0	0.0	3.5	0.0	0.0
Merged-chr4-150474984-4	chr4	150474466	150475466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 6 of 22)	intron (NM_001085492, intron 6 of 22)	177208.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	1.0	2.0	1.5	5.5	5.5	12.5
Merged-chr14-77874870-4	chr14	77874325	77875325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025384)	promoter-TSS (NM_025384)	92.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	87.5	127.5	80.5	19.5	38.5	29.0
Merged-chr1-63730618-4	chr1	63730128	63731128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172422)	promoter-TSS (NM_172422)	3.0	NM_172422	75619.0	Mm.30965	NM_172422	ENSMUSG00000025962	Fastkd2	2810421I24Rik	FAST kinase domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154928200-4	chr4	154927747	154928747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178931)	promoter-TSS (NM_178931)	-170.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	75.5	275.0	136.5	59.5	247.0	143.0
Merged-chr17-26510208-2	chr17	26509708	26510708	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1736.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-67266875-4	chr6	67266335	67267335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025814)	promoter-TSS (NM_025814)	-144.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-42929207-4	chr6	42928718	42929718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3A1|LTR|ERVK	1985.0	NM_146295	258292.0	Mm.222992	NM_146295	ENSMUSG00000073111	Olfr446	MOR261-12	olfactory receptor 446	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78876363-4	chr15	78875855	78876855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145929)	promoter-TSS (NM_145929)	-835.0	NM_145929	106039.0	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	104.5	277.5	167.5	118.0	329.5	169.0
Merged-chr10-96690505-4	chr10	96689997	96690997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73496.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23543491-4	chr13	23542933	23543933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013548)	promoter-TSS (NM_013548)	11.0	NM_178197	319182.0	Mm.352273	NM_178197	ENSMUSG00000114456	Hist1h2bh	H2b-221	histone cluster 1, H2bh	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-52279490-4	chr14	52278973	52279973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172601)	promoter-TSS (NM_172601)	-78.0	NM_172601	76338.0	Mm.32870	NM_172601	ENSMUSG00000022159	Rab2b	1500012D09Rik|4930528G15Rik|A230002G14|D530043M21Rik	RAB2B, member RAS oncogene family	protein-coding	227.0	450.5	342.5	176.5	480.0	271.0
Merged-chr4-33028945-2	chr4	33028445	33029445	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_036602, exon 2 of 2)	non-coding (NR_036602, exon 2 of 2)	2378.0	NR_036602	100504166.0	Mm.426309	NR_036602	ENSMUSG00000085037	4933421O10Rik	-	RIKEN cDNA 4933421O10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83165806-4	chr6	83165308	83166308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198866)	promoter-TSS (NM_001198866)	-116.0	NM_001198866	13191.0	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150<glued>	dynactin 1	protein-coding	65.5	49.0	34.0	40.0	49.0	37.5
Merged-chr1-131188730-4	chr1	131188240	131189240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018750, intron 2 of 5)	MIR3|SINE|MIR	11445.0	NM_001311094	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	3.0	1.0	10.0	7.0	12.5	7.0
Merged-chr3-27863076-2	chr3	27862576	27863576	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33292.0	NM_001164437	208613.0	Mm.59189	NM_001164437	ENSMUSG00000043164	Tmem212	E030011K20Rik|Gm564	transmembrane protein 212	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5806946-4	chr19	5806454	5807454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4282.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10359604-4	chr17	10359102	10360102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35000.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127470973-4	chr7	127470484	127471484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145589)	promoter-TSS (NM_145589)	-630.0	NM_145589	233895.0	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54369399-4	chr12	54368899	54369899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21919.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21425925-4	chr11	21425443	21426443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54676.0	NM_001290634	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	31.0	57.0	40.5	48.0	84.5	54.5
Merged-chr7-48973071-2	chr7	48972571	48973571	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	13998.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55474034-4	chr12	55473541	55474541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18606.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121821749-2	chr5	121821249	121822249	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001306126, intron 3 of 8)	intron (NM_001306126, intron 3 of 8)	-2476.0	NR_105998	102465624.0		NR_105998	ENSMUSG00000099063	Mir7031	Gm27859|mmu-mir-7031	microRNA 7031	ncRNA	1.0	1.0	1.5	0.0	0.0	2.0
Merged-chr13-92986085-3	chr13	92985574	92986574	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87230.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-57407902-1	chr14	57407402	57408402	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-9419.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78862515-4	chr15	78861999	78862999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-6970.0	NM_025622	107753.0	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	57.0	159.5	102.5	80.0	174.5	136.5
Merged-chr2-165317085-4	chr2	165316582	165317582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302754)	promoter-TSS (NM_001302754)	-731.0	NM_001302754	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54218469-4	chr13	54217956	54218956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153432, intron 2 of 3)	intron (NR_153432, intron 2 of 3)	26323.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	5.0	22.0	2.5	0.0	1.5	13.5
Merged-chr9-90431147-4	chr9	90430660	90431660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-160391.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	2.0	0.0	4.0	0.0	5.5	1.0
Merged-chr16-32419659-4	chr16	32419167	32420167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025329)	promoter-TSS (NM_025329)	-35.0	NR_154990	66061.0	Mm.302693	NM_025329	ENSMUSG00000014075	Tctex1d2	0610012D17Rik|2410011K15Rik	Tctex1 domain containing 2	protein-coding	28.0	64.5	33.0	21.5	69.0	35.0
Merged-chr3-108255787-2	chr3	108255287	108256287	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1139.0	NM_011967	26442.0	Mm.208883	NM_011967	ENSMUSG00000068749	Psma5	ZETA	proteasome (prosome, macropain) subunit, alpha type 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111562794-4	chr9	111562305	111563305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016853, intron 10 of 10)	intron (NM_016853, intron 10 of 10)	123724.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	32.5	55.0	77.0	39.0	74.0	52.5
Merged-chr8-79640142-4	chr8	79639644	79640644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081164, intron 1 of 20)	CpG	468.0	NM_001081164	73945.0	Mm.34348	NM_001081164	ENSMUSG00000036990	Otud4	4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046	OTU domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78572795-4	chr15	78572290	78573290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009008)	promoter-TSS (NM_009008)	-7.0	NM_009008	19354.0	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	Rac family small GTPase 2	protein-coding	34.5	112.5	80.5	34.0	118.5	83.5
Merged-chr2-51972287-4	chr2	51971781	51972781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019401, intron 1 of 7)	intron (NM_019401, intron 1 of 7)	927.0	NM_001141949	64685.0	Mm.7491	NM_019401	ENSMUSG00000026946	Nmi	-	N-myc (and STAT) interactor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-46371208-4	chr2	46370711	46371711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	674606.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-139012590-4	chr3	139012096	139013096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286759, intron 4 of 14)	intron (NM_001286759, intron 4 of 14)	62605.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	12.0	2.5	7.0	2.0	3.0	6.0
Merged-chr9-35118839-4	chr9	35118334	35119334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_029475, intron 2 of 5)	intron (NR_029475, intron 2 of 5)	-1970.0	NM_009178	20443.0	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	SIAT4-C|ST3Gal IV|ST3GalIV|Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	32.5	78.0	47.5	32.5	81.0	48.5
Merged-chr7-113612801-4	chr7	113612315	113613315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-47828.0	NR_126544	69295.0	Mm.396150	NR_126544	ENSMUSG00000084984	Far1os	1700006P19Rik	fatty acyl CoA reductase 1, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-6578578-4	chr6	6578035	6579035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009169, exon 1 of 3)	exon (NM_009169, exon 1 of 3)	123.0	NM_009169	20422.0	Mm.2469	NM_009169	ENSMUSG00000042541	Sem1	DSS1|Shfdg1|Shfg|Shfm1	SEM1, 26S proteasome complex subunit	protein-coding	199.0	430.5	331.5	138.5	345.5	213.0
Merged-chr5-77015999-4	chr5	77015482	77016482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027970)	promoter-TSS (NM_027970)	-41.0	NM_027970	71868.0	Mm.151092	NM_027970	ENSMUSG00000029248	Thegl	1700023E05Rik	theg spermatid protein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38533678-4	chr6	38533182	38534182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1179.0	NM_025363	66117.0	Mm.158971	NM_025363	ENSMUSG00000019689	Fmc1	1110001J03Rik	formation of mitochondrial complex V assembly factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153241458-4	chr2	153240957	153241957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018807)	promoter-TSS (NM_018807)	-75.0	NM_080463	140484.0	Mm.293761	NM_080463	ENSMUSG00000046020	Pofut1	O-FucT-1|mKIAA0180	protein O-fucosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91143176-1	chr2	91142676	91143676	+	1000.0	f1_c57bl6.idr	intron (NM_001177719, intron 31 of 34)	intron (NM_001177719, intron 31 of 34)	25032.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-95745255-4	chr12	95744765	95745765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	53039.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12991305-4	chr17	12990803	12991803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175394, intron 1 of 5)	intron (NM_175394, intron 1 of 5)	956.0	NM_001113533	60532.0	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38483511-4	chr15	38483008	38484008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7039.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-94438231-4	chr2	94437737	94438737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001349003)	promoter-TSS (NM_001349003)	-51.0	NM_001349003	11800.0	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91399722-2	chr16	91399222	91400222	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010509, intron 8 of 8)	intron (NM_010509, intron 8 of 8)	-6513.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17583509-4	chr17	17583009	17584009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	ORR1E|LTR|ERVL-MaLR	40980.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	26.5	45.5	29.0	25.5	65.5	34.5
Merged-chr9-59659545-4	chr9	59659064	59660064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253883, intron 1 of 10)	intron (NM_001253883, intron 1 of 10)	3196.0	NM_011099	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72098145-3	chr6	72097640	72098640	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	532.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4113311-4	chr19	4112834	4113834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001276284)	TTS (NM_001276284)	8241.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91413319-4	chr1	91412823	91413823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019479)	promoter-TSS (NM_019479)	-101.0	NM_001360899	55927.0	Mm.280029	NM_019479	ENSMUSG00000067071	Hes6	AI326893|bHLHb41	hairy and enhancer of split 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-65089213-4	chr1	65088714	65089714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6924.0	NM_144761	12965.0	Mm.440053	NM_144761	ENSMUSG00000073658	Crygb	Cryg-3|DGcry-3|Nop	crystallin, gamma B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101844231-4	chr13	101843725	101844725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76008.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69316738-4	chr3	69316219	69317219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178726)	promoter-TSS (NM_178726)	-199.0	NM_178726	242083.0	Mm.40577	NM_178726	ENSMUSG00000027784	Ppm1l	3222401G13|5930404J21Rik|AI481720|AW045850|PP2C|PP2Cepsilon|Pp2ce|Ppp2ce|mKIAA4175	protein phosphatase 1 (formerly 2C)-like	protein-coding	157.0	181.5	141.5	149.5	258.0	207.0
Merged-chr14-14703631-3	chr14	14703102	14704102	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360513, intron 1 of 25)	CpG	577.0	NM_001360509	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	10.5	49.5	34.5	7.0	42.5	27.5
Merged-chr2-174329981-4	chr2	174329431	174330431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077510)	promoter-TSS (NM_001077510)	-139.0	NM_201616	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11909329-4	chr16	11908833	11909833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146067)	promoter-TSS (NM_146067)	90.0	NM_146067	223978.0	Mm.86360	NM_146067	ENSMUSG00000065979	Cpped1	C530044N13Rik	calcineurin-like phosphoesterase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126260164-4	chr4	126259667	126260667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2238.0	NM_013718	27096.0	Mm.8392	NM_013718	ENSMUSG00000028847	Trappc3	1110058K12Rik|AI835942|AU019197|Bet3	trafficking protein particle complex 3	protein-coding	52.5	158.5	116.0	74.5	166.5	95.0
Merged-chr11-58171657-4	chr11	58171211	58172211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175001)	promoter-TSS (NM_175001)	57.0	NM_175001	216767.0	Mm.259907	NM_175001	ENSMUSG00000020514	Mrpl22	E030011D16Rik|HSPC158|MRP-L25|Rpml25	mitochondrial ribosomal protein L22	protein-coding	21.0	22.5	19.5	19.0	13.5	20.0
Merged-chr5-146832993-4	chr5	146832528	146833528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019647, exon 1 of 6)	5' UTR (NM_019647, exon 1 of 6)	138.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	235.5	548.5	379.0	219.5	593.0	383.5
Merged-chr2-84603668-2	chr2	84603168	84604168	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007615, exon 19 of 20)	exon (NM_007615, exon 19 of 20)	45812.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	3.0	4.5	4.0	6.5	11.0	5.0
Merged-chr11-86687567-2	chr11	86687067	86688067	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001098810, intron 1 of 1)	intron (NM_001098810, intron 1 of 1)	3486.0	NM_001098810	217057.0	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59208730-1	chr11	59208230	59209230	+	1000.0	f0_c57.idr	intron (NM_024210, intron 1 of 6)	intron (NM_024210, intron 1 of 6)	369.0	NM_024210	67862.0	Mm.358708	NM_024210	ENSMUSG00000020441	2310033P09Rik	Mmtag2	RIKEN cDNA 2310033P09 gene	protein-coding	84.5	227.0	184.0	125.0	230.5	175.0
Merged-chr12-70472864-4	chr12	70472353	70473353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037248, intron 2 of 4)	L1M2|LINE|L1	19699.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	7.0	17.5	10.0	4.5	5.5	7.0
Merged-chr3-127293062-4	chr3	127292569	127293569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	115989.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	33.5	69.5	51.5	12.5	18.5	17.5
Merged-chr17-17867235-4	chr17	17866721	17867721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12033.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	156.0	293.5	197.5	154.0	227.5	155.5
Merged-chr15-83464697-4	chr15	83464182	83465182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159509)	promoter-TSS (NM_001159509)	-76.0	NM_001358643	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-123259288-2	chr6	123258788	123259788	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-2819.0	NM_001163161	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107954458-4	chr13	107953955	107954955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64391.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	20.0	43.0	50.5	27.0	46.0	46.0
Merged-chr10-81292834-4	chr10	81292333	81293333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008844)	promoter-TSS (NM_008844)	-130.0	NM_008844	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49204133-4	chr11	49203636	49204636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024846, intron 1 of 4)	intron (NM_001024846, intron 1 of 4)	636.0	NM_009562	22720.0	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-67194522-4	chr13	67194021	67195021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001048204)	promoter-TSS (NM_001048204)	15.0	NM_001048204	218311.0	Mm.82396	NM_183156	ENSMUSG00000051037	Zfp455	3732412P20Rik|Rslcan-10	zinc finger protein 455	protein-coding	25.5	71.0	52.5	22.0	77.0	43.0
Merged-chr15-76080942-4	chr15	76080454	76081454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133691)	promoter-TSS (NM_133691)	-8.0	NM_028364	67959.0	Mm.29965	NM_028364	ENSMUSG00000002524	Puf60	2410104I19Rik|2810454F19Rik|SIAHBP1	poly-U binding splicing factor 60	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33062414-4	chr16	33061900	33062900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172823)	promoter-TSS (NM_172823)	-121.0	NM_172823	239833.0	Mm.131951	NM_172823	ENSMUSG00000022802	Lmln	5330415H22Rik|AI465495	leishmanolysin-like (metallopeptidase M8 family)	protein-coding	7.0	25.5	34.0	24.0	36.5	32.5
Merged-chr2-119029469-4	chr2	119029027	119030027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199310)	promoter-TSS (NM_199310)	-134.0	NM_199310	269336.0	Mm.292465	NM_199310	ENSMUSG00000039983	Ccdc32	Gm631	coiled-coil domain containing 32	protein-coding	24.0	57.0	36.0	36.0	48.0	37.5
Merged-chr14-55643276-6	chr14	55642814	55643814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360063)	promoter-TSS (NM_001360063)	57.0	NM_001360063	74140.0	Mm.132857	NM_028780	ENSMUSG00000002320	Tm9sf1	1200014D02Rik|AI893436|MP70	transmembrane 9 superfamily member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-42367802-4	chr13	42367297	42368297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66321.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128696432-4	chr10	128695930	128696930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177411)	promoter-TSS (NM_177411)	-162.0	NM_177411	19344.0	Mm.12815	NM_011229	ENSMUSG00000000711	Rab5b	C030027M18Rik	RAB5B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100950683-4	chr7	100950189	100951189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	L2|LINE|L2	13677.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	37.0	80.5	75.0	37.5	70.5	58.0
Merged-chr9-70838695-4	chr9	70838174	70839174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	96134.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-21962683-4	chr17	21962190	21963190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199048)	promoter-TSS (NM_001199048)	131.0	NM_001025373	74670.0	Mm.26540	NM_001025373	ENSMUSG00000053347	Zfp943	4930432O21Rik	zinc finger prtoein 943	protein-coding	110.5	278.0	198.5	66.5	117.0	72.5
Merged-chr2-91972363-4	chr2	91971861	91972861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER58B|DNA|hAT-Charlie	-8798.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	55.0	43.5	28.0	27.5	78.0	66.5
Merged-chr16-31290464-4	chr16	31289958	31290958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-15181.0	NM_025800	66849.0	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|I-2|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	31.5	39.0	23.0	13.5	26.0	32.5
Merged-chr9-20878297-4	chr9	20877797	20878797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145154, exon 2 of 6)	exon (NM_145154, exon 2 of 6)	1413.0	NM_145154	70726.0	Mm.34019	NM_145154	ENSMUSG00000038742	Angptl6	6330404E11Rik|AGF|ARP3|Arp5	angiopoietin-like 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84235869-4	chr15	84235369	84236369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	intron (NM_133167, intron 1 of 12)	3826.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-125725599-4	chr10	125725103	125726103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-240616.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-14039600-4	chr13	14039099	14040099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_130788)	promoter-TSS (NR_130788)	39.0	NR_130788	70430.0	Mm.260209	NM_178337	ENSMUSG00000039233	Tbce	2610206D02Rik|C530005D02Rik|pmn	tubulin-specific chaperone E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21091831-4	chr11	21091330	21092330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023324, intron 1 of 6)	CpG	506.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13545901-4	chr9	13545393	13546393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74096.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	11.5	58.0	29.5	26.0	56.5	23.5
Merged-chr3-135731474-4	chr3	135730955	135731955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39908.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-7298730-4	chr7	7298203	7299203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_049193)	promoter-TSS (NR_049193)	133.0	NM_001302386	12727.0	Mm.297883	NM_011334	ENSMUSG00000000605	Clcn4	Clc4-2|Clcn4-2|clC-4	chloride channel, voltage-sensitive 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86242825-4	chr12	86242319	86243319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027405, intron 1 of 9)	intron (NM_027405, intron 1 of 9)	961.0	NM_001324488	70373.0	Mm.252967	NM_027405	ENSMUSG00000021254	Gpatch2l	1700020O03Rik|4732487G21Rik|A630090I05Rik|Kiaa1152	G patch domain containing 2 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34029450-4	chr6	34028992	34029992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028886)	promoter-TSS (NM_028886)	44.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5615127-4	chr17	5614620	5615620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	122520.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4353441-4	chr18	4352964	4353964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040328)	promoter-TSS (NR_040328)	-83.0	NR_040328	73915.0	Mm.482777	NR_040328		4833419F23Rik	-	RIKEN cDNA 4833419F23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64532850-4	chr1	64532343	64533343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009952)	promoter-TSS (NM_009952)	39.0	NM_001037726	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77825881-4	chr9	77825359	77826359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71324.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	57.0	125.5	88.0	28.0	90.5	67.5
Merged-chr16-8666657-4	chr16	8666124	8667124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025821, intron 1 of 3)	intron (NM_025821, intron 1 of 3)	5529.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75153383-4	chr11	75152873	75153873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 15 of 18)	intron (NM_001002764, intron 15 of 18)	14779.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	26.0	21.5	21.0	26.0	24.0	32.0
Merged-chr11-68431850-4	chr11	68431431	68432431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177320)	promoter-TSS (NM_177320)	-194.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184537039-2	chr1	184536539	184537539	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040472, intron 2 of 5)	PB1D9|SINE|Alu	20652.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122777052-4	chr2	122776553	122777553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027888, intron 1 of 9)	intron (NR_027888, intron 1 of 9)	-4946.0	NM_021507	59010.0	Mm.28986	NM_021507	ENSMUSG00000005803	Sqor	0610039J17Rik|4930557M22Rik|Sqrdl	sulfide quinone oxidoreductase	protein-coding	33.0	64.5	29.5	37.0	60.5	42.5
Merged-chr11-101442257-4	chr11	101441771	101442771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011289)	promoter-TSS (NM_011289)	26.0	NM_011289	19942.0	Mm.340658	NM_011289	ENSMUSG00000063316	Rpl27	-	ribosomal protein L27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98872247-4	chr15	98871780	98872780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1075.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20806999-4	chr11	20806628	20807628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	23980.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29029258-1	chr17	29028758	29029758	+	1000.0	f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3402.0	NM_013663	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	1.0	0.0	1.0	1.0	4.0	1.0
Merged-chr13-93231227-4	chr13	93230726	93231726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38809.0	NM_001361537	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	16.0	31.0	13.0	8.5	36.0	23.0
Merged-chr14-27412896-4	chr14	27412394	27413394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC|LINE|L1	-15940.0	NM_028945	218850.0	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	21.5	41.5	37.0	20.0	32.5	29.5
Merged-chr10-4430542-4	chr10	4430045	4431045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358796, intron 1 of 13)	L2|LINE|L2	-1379.0	NR_002891	433224.0	Mm.153111	NR_002891	ENSMUSG00000112693	Gm5512	EG433224	required for meiotic nuclear division 1 pseudogene	pseudo	50.0	257.0	221.5	69.0	169.0	152.5
Merged-chr13-61804321-3	chr13	61803792	61804792	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32712.0	NR_028430	432812.0	Mm.317358	NR_028430		BC052688	-	cDNA sequence BC052688	pseudo	0.5	17.0	7.5	0.0	0.0	0.0
Merged-chr1-180261129-4	chr1	180260659	180261659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-4859.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94779313-4	chr8	94778809	94779809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009142, intron 2 of 2)	intron (NM_009142, intron 2 of 2)	7129.0	NM_009142	20312.0	Mm.103711	NM_009142	ENSMUSG00000031778	Cx3cl1	AB030188|ABCD-3|AI848747|CX3C|Cxc3|D8Bwg0439e|Scyd1	chemokine (C-X3-C motif) ligand 1	protein-coding	7.0	10.5	14.0	8.0	13.0	14.5
Merged-chr4-101293224-4	chr4	101292779	101293779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-27997.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-63132482-2	chr11	63131982	63132982	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302259)	promoter-TSS (NM_001302259)	-87.0	NM_001302259	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-23052748-4	chr2	23052227	23053227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12486.0	NM_145994	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108765962-4	chr12	108765464	108766464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27347.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-67082256-4	chr13	67081760	67082760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001012448)	promoter-TSS (NM_001012448)	-715.0	NM_001292066	432769.0	Mm.458849	NM_001012325	ENSMUSG00000058883	Zfp708	Rslcan11	zinc finger protein 708	protein-coding	2.0	20.0	30.5	9.0	15.0	17.0
Merged-chr9-25510217-2	chr9	25509717	25510717	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	RMER17B|LTR|ERVK	28620.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-18055526-4	chr10	18055054	18056054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111065)	promoter-TSS (NM_001111065)	-386.0	NM_009048	19707.0	Mm.4479	NM_009048	ENSMUSG00000019854	Reps1	BB161292	RalBP1 associated Eps domain containing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-66458148-3	chr18	66457653	66458653	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021451)	promoter-TSS (NM_021451)	-451.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-22074891-2	chr3	22074391	22075391	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1761.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180264575-2	chr1	180264075	180265075	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8275.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117224817-4	chr8	117224341	117225341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32178.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64266309-4	chr13	64265789	64266789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045798, intron 1 of 2)	intron (NR_045798, intron 1 of 2)	8699.0	NM_172587	218294.0	Mm.25335	NM_172587	ENSMUSG00000033102	Cdc14b	2810432N10Rik|A530086E13Rik|AA472821|CDC14B3|Cdc14B1	CDC14 cell division cycle 14B	protein-coding	9.5	17.5	35.5	10.0	26.5	30.0
Merged-chr1-178342773-4	chr1	178342299	178343299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B3|LTR|ERVL	-4984.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181739511-4	chr2	181739019	181740019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-23813.0	NM_001171615	17932.0	Mm.458718	NM_008665	ENSMUSG00000010505	Myt1	Nzf2|Nzf2a|Nzf2b|Nztf2	myelin transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138125465-3	chr1	138124968	138125968	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111316, intron 2 of 31)	intron (NM_001111316, intron 2 of 31)	49658.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125734972-2	chr8	125734472	125735472	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025636, intron 1 of 4)	intron (NM_025636, intron 1 of 4)	769.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120782085-2	chr11	120781585	120782585	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009053, intron 6 of 7)	intron (NM_009053, intron 6 of 7)	2119.0	NM_009053	19719.0	Mm.871	NM_009053	ENSMUSG00000025158	Rfng	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41810068-4	chr10	41809586	41810586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243075)	promoter-TSS (NM_001243075)	-218.0	NM_026643	103268.0	Mm.338605	NM_026643	ENSMUSG00000019813	Cep57l1	2410017P07Rik|4930484D11Rik|AI607327|cep57R	centrosomal protein 57-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-45864690-4	chr1	45864184	45865184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60910.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96759871-4	chr3	96759374	96760374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026406, intron 3 of 8)	intron (NM_026406, intron 3 of 8)	32263.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123886601-4	chr5	123886099	123887099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6579.0	NM_175520	243270.0	Mm.33362	NM_175520	ENSMUSG00000049241	Hcar1	Gpr81	hydrocarboxylic acid receptor 1	protein-coding	0.0	0.5	5.0	10.0	2.0	1.0
Merged-chr16-44757913-4	chr16	44757415	44758415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-7821.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32189285-4	chr16	32188779	32189779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	9479.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-108347239-4	chr4	108346731	108347731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19079.0	NM_027250	69893.0	Mm.28354	NM_027250	ENSMUSG00000048351	Coa7	2010305A19Rik|AI451324|D4Ertd796e|Selrc1	cytochrome c oxidase assembly factor 7	protein-coding	2.5	10.5	8.5	2.5	10.0	7.5
Merged-chr11-114884898-4	chr11	114884412	114885412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5129.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20332795-4	chr11	20332313	20333313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018861)	promoter-TSS (NM_018861)	-100.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	19.0	37.0	18.5	5.0	29.5	22.5
Merged-chr2-45049476-4	chr2	45048988	45049988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-26311.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172126721-4	chr1	172126212	172127212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159525)	promoter-TSS (NM_001159525)	-43.0	NM_001356513	19298.0	Mm.247764	NM_023041	ENSMUSG00000003464	Pex19	Pxf	peroxisomal biogenesis factor 19	protein-coding	14.5	57.5	18.5	14.5	36.5	38.0
Merged-chr15-31602195-4	chr15	31601679	31602679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007637)	promoter-TSS (NM_007637)	63.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-138521082-4	chr3	138520590	138521590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5101.0	NM_007917	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-82812019-4	chr10	82811519	82812519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038042)	promoter-TSS (NR_038042)	-104.0	NR_038042	70003.0	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	10.5	6.5	11.0	0.0	0.0	0.0
Merged-chr10-80939879-4	chr10	80939383	80940383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9792.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-76522640-4	chr5	76522120	76523120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-6687.0	NM_001359372	69940.0	Mm.403233	NM_027270	ENSMUSG00000036435	Exoc1	2810407P21Rik|A730011E05Rik|SEC3|Sec3l1|Sec3p	exocyst complex component 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32588387-2	chr2	32587887	32588887	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011373, intron 1 of 4)	intron (NM_011373, intron 1 of 4)	1309.0	NM_011373	20448.0	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81576628-2	chr10	81576128	81577128	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001252401, exon 4 of 20)	exon (NM_001252401, exon 4 of 20)	1341.0	NM_001252401	21886.0	Mm.38608	NM_019725	ENSMUSG00000034771	Tle2	Grg2|mKIAA4188	transducin-like enhancer of split 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126377515-4	chr7	126377041	126378041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045537, exon 1 of 13)	non-coding (NR_045537, exon 1 of 13)	393.0	NM_023712	73658.0	Mm.11112	NM_023712	ENSMUSG00000030741	Spns1	2210013K02Rik|Spin1|Spinl	spinster homolog 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-61583118-4	chr2	61582585	61583585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011529, intron 1 of 7)	L1M4|LINE|L1	4499.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101828196-2	chr5	101827696	101828696	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63066.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	3.5	0.0	1.0	1.0	3.0	2.5
Merged-chr5-124480353-4	chr5	124479844	124480844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2109.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40196175-4	chr9	40195673	40196673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153114, intron 1 of 6)	intron (NR_153114, intron 1 of 6)	3857.0	NM_030713	80902.0	Mm.132196	NM_030713	ENSMUSG00000025602	Zfp202	C130037E22Rik|Znf202	zinc finger protein 202	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-69352948-4	chr10	69352446	69353446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007659)	promoter-TSS (NM_007659)	-34.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158794735-4	chr2	158794233	158795233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291144)	promoter-TSS (NM_001291144)	-74.0	NM_145742	71715.0	Mm.315652	NM_145742	ENSMUSG00000027655	Dhx35	1200009D07Rik|Ddx35	DEAH (Asp-Glu-Ala-His) box polypeptide 35	protein-coding	19.5	33.0	43.0	13.5	33.0	44.5
Merged-chr18-12949307-4	chr18	12948802	12949802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7461.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52895117-4	chr2	52894620	52895620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	37252.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98662729-8	chr15	98662226	98663226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080981, intron 1 of 16)	CpG	163.0	NM_001080981	74351.0	Mm.45725	NM_001080981	ENSMUSG00000003360	Ddx23	3110082M05Rik|4921506D17Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-100110175-4	chr6	100109655	100110655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	177203.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3806465-4	chr12	3805979	3806979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271753)	promoter-TSS (NM_001271753)	-501.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5569786-4	chr17	5569306	5570306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	77206.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164911622-8	chr2	164911110	164912110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_199027, exon 1 of 28)	5' UTR (NM_199027, exon 1 of 28)	140.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	7.0	19.5	23.5	21.5	46.5	21.0
Merged-chr3-144700151-4	chr3	144699652	144700652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 6 of 10)	intron (NM_001282037, intron 6 of 10)	20183.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137758312-2	chr5	137757812	137758812	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023910, intron 3 of 4)	intron (NM_023910, intron 3 of 4)	12343.0	NM_029805	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143113063-4	chr5	143112535	143113535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207110)	promoter-TSS (NM_207110)	-15.0	NM_001359851	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-91728076-4	chr13	91727578	91728578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028314, intron 1 of 1)	L1MC4a|LINE|L1	-13443.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120866899-1	chr9	120866399	120867399	+	1000.0	f0_balb.idr	Intergenic	Intergenic	48351.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-31008363-4	chr7	31007864	31008864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26443.0	NM_001242647	76415.0	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103713069-2	chr14	103712569	103713569	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13637.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52575690-4	chr13	52575204	52576204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2479.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-51377427-4	chr12	51376927	51377927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029825)	promoter-TSS (NM_029825)	-86.0	NM_001306178	76983.0	Mm.216511	NM_029825	ENSMUSG00000020952	Scfd1	3110021P21Rik|RA410|STXBP1L2	Sec1 family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5510639-4	chr19	5510148	5511148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024560)	promoter-TSS (NM_001024560)	-131.0	NM_001024560	225861.0	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	0.0	0.5	0.0	0.0	2.0	0.0
Merged-chr9-44567827-4	chr9	44567310	44568310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37082.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	89.0	169.0	110.5	80.0	191.0	100.0
Merged-chr3-105895435-4	chr3	105894941	105895941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-8980.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	15.5	18.0	15.0	16.0	5.0	18.0
Merged-chr7-44553962-4	chr7	44553458	44554458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285519)	promoter-TSS (NM_001285519)	7.0	NM_009473	22260.0	Mm.968	NM_009473	ENSMUSG00000060601	Nr1h2	AI194859|LXR|LXRB|LXRBSV|LXRbeta|NER1|OR-1|RIP15|UR|Unr|Unr2	nuclear receptor subfamily 1, group H, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41774200-2	chr4	41773688	41774688	+	1000.0	f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_001347065)	promoter-TSS (NM_001347065)	-12.0	NM_001048179	20301.0	Mm.335946	NM_011336	ENSMUSG00000073888	Ccl27a	ALP|AW558992|CTACK|CTAK|Ccl27|ESkine|ILC|PESKY|Scya27|Scya27a	chemokine (C-C motif) ligand 27A	protein-coding	11.0	34.5	2.0	0.0	0.0	0.0
Merged-chr14-76152695-4	chr14	76152191	76153191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41800.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97342878-1	chr7	97342378	97343378	+	1000.0	f1_balb.idr	intron (NM_001039039, intron 1 of 1)	intron (NM_001039039, intron 1 of 1)	10555.0	NM_001039039	622320.0	Mm.334029	NM_001039039	ENSMUSG00000044952	Kctd21	EG622320	potassium channel tetramerisation domain containing 21	protein-coding	7.5	0.0	3.0	4.0	0.0	0.0
Merged-chr6-122657913-4	chr6	122657400	122658400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31476.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-40894139-4	chr3	40893639	40894639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026622)	promoter-TSS (NM_026622)	-138.0	NM_026622	269423.0	Mm.32373	NM_026622	ENSMUSG00000037818	Abhd18	2310068E01Rik|3110057O12Rik|AI645591	abhydrolase domain containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139769636-2	chr5	139769136	139770136	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026748, intron 10 of 46)	intron (NM_026748, intron 10 of 46)	-1693.0	NR_106004	102465628.0		NR_106004	ENSMUSG00000098574	Mir7037	Gm27447|mmu-mir-7037	microRNA 7037	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-80272695-3	chr8	80272207	80273207	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-214699.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191075441-5	chr1	191074895	191075895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198654, intron 4 of 5)	HAL1|LINE|L1	12374.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	29.5	126.0	69.5	30.5	84.0	56.5
Merged-chr19-46343925-4	chr19	46343408	46344408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1146.0	NR_030468	751550.0		NR_030468	ENSMUSG00000070127	Mir146b	Mirn146b|mir-146b	microRNA 146b	ncRNA	16.5	19.5	23.0	4.5	28.0	26.5
Merged-chr2-34754316-4	chr2	34753813	34754813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151469, exon 2 of 27)	non-coding (NR_151469, exon 2 of 27)	919.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38661888-4	chr15	38661399	38662399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025494)	promoter-TSS (NM_025494)	-5.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127391569-4	chr2	127391085	127392085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	28299.0	NM_009633	11552.0	Mm.347390	NM_009633	ENSMUSG00000058620	Adra2b	Adra-2b|[a]2B|a2b-AR|alpha2-C2|alpha2B	adrenergic receptor, alpha 2b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34369781-4	chr5	34369296	34370296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243123)	promoter-TSS (NM_001243123)	-137.0	NM_001243123	231128.0	Mm.286885	NM_001030306	ENSMUSG00000037210	Fam193a	-	family with sequence similarity 193, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72141396-4	chr6	72140894	72141894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 3 of 6)	intron (NM_001035228, intron 3 of 6)	-18197.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115463150-4	chr6	115462664	115463664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001127330, exon 6 of 8)	exon (NM_001127330, exon 6 of 8)	41098.0	NM_011146	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12457888-1	chr19	12457388	12458388	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-2891.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	74.0	190.0	102.0	69.5	206.5	137.0
Merged-chr9-107612313-4	chr9	107611841	107612841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3100.0	NM_001291539	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36023771-4	chr17	36023288	36024288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015618, intron 1 of 1)	intron (NR_015618, intron 1 of 1)	-3228.0	NM_008207	15042.0	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53264296-4	chr18	53263782	53264782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	18620.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	47.0	99.5	109.0	56.0	152.5	106.5
Merged-chr6-31109419-4	chr6	31108926	31109926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-46333.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94486192-3	chr10	94485712	94486712	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-28645.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170508995-4	chr2	170508494	170509494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040367, intron 1 of 2)	intron (NR_040367, intron 1 of 2)	-2236.0	NM_001110152	109054.0	Mm.28808	NM_001013369	ENSMUSG00000052033	Pfdn4	0610025M10Rik|1810063B06Rik|C-1|C1|Pfd4	prefoldin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-59074982-4	chr19	59074486	59075486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 1 of 16)	intron (NM_001114312, intron 1 of 16)	1083.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146720156-2	chr5	146719656	146720656	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74800.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0.0	0.0	2.0	0.0	2.0	1.5
Merged-chr7-101027840-4	chr7	101027319	101028319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15766.0	NM_001302346	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91547027-4	chr16	91546535	91547535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008338)	promoter-TSS (NM_008338)	-59.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	25.0	63.0	26.0	18.5	66.0	28.0
Merged-chr5-148556738-3	chr5	148556293	148557293	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4005.0	NM_001359199	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	14.0	118.0	67.0	4.5	14.0	12.0
Merged-chr7-112285780-3	chr7	112285340	112286340	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001193305, intron 3 of 25)	intron (NM_001193305, intron 3 of 25)	60004.0	NM_001193305	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	5.0	0.0	0.0	0.0	0.0	2.0
Merged-chr10-94059798-4	chr10	94059289	94060289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 2 of 20)	intron (NM_053072, intron 2 of 20)	23788.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	56.0	58.5	69.5	15.5	28.0	39.5
Merged-chr13-75788393-4	chr13	75787886	75788886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51499.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	28.5	72.5	49.5	9.5	28.0	19.5
Merged-chr4-102558068-4	chr4	102557564	102558564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-11996.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29609896-4	chr6	29609407	29610407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347079)	promoter-TSS (NM_001347079)	-58.0	NM_001347079	320938.0	Mm.276381	NM_177296	ENSMUSG00000012535	Tnpo3	5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133	transportin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147527126-2	chr5	147526626	147527626	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028291, intron 10 of 18)	intron (NM_028291, intron 10 of 18)	96970.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	1.0	6.5	0.5	0.0	7.5	3.0
Merged-chr16-92466326-4	chr16	92465830	92466830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081549)	promoter-TSS (NM_001081549)	-161.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101425562-2	chr11	101425062	101426062	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026865)	promoter-TSS (NM_026865)	-234.0	NM_001361123	73635.0	Mm.472804	NM_026865	ENSMUSG00000097487	Ptges3l	1110069E20Rik|1700113I22Rik	prostaglandin E synthase 3 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116053708-7	chr4	116053205	116054205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028142, exon 1 of 6)	exon (NM_028142, exon 1 of 6)	171.0	NM_028142	72181.0	Mm.282560	NM_028142	ENSMUSG00000028706	Nsun4	2310010O12Rik|2810405F18Rik|AI507900|Shtap	NOL1/NOP2/Sun domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-68929371-2	chr3	68928871	68929871	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026641, intron 12 of 19)	L1M2|LINE|L1	59785.0	NM_001167996	68725.0	Mm.45741	NM_001167996	ENSMUSG00000046999	1110032F04Rik	AI115547	RIKEN cDNA 1110032F04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82004995-4	chr11	82004466	82005466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30611.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45465807-2	chr7	45465307	45466307	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007527, intron 3 of 5)	intron (NM_007527, intron 3 of 5)	1091.0	NM_007527	12028.0	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90925668-2	chr16	90925168	90926168	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026502)	TTS (NM_026502)	9181.0	NM_026502	68001.0	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36997857-4	chr16	36997350	36998350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-7383.0	NM_001358217	207215.0	Mm.211899	NM_001037321	ENSMUSG00000047746	Fbxo40	9830003A13Rik|mKIAA1195	F-box protein 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4071279-4	chr7	4070806	4071806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8102.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-91082094-4	chr10	91081603	91082603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027078)	promoter-TSS (NM_027078)	640.0	NM_001042558	11783.0	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	107.0	248.5	209.0	122.0	273.5	217.5
Merged-chr6-140623487-4	chr6	140622996	140623996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009637)	promoter-TSS (NM_009637)	-6.0	NM_001005605	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154574429-3	chr2	154573957	154574957	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4565.0	NM_007891	13555.0	Mm.18036	NM_007891	ENSMUSG00000027490	E2f1	E2F-1|Tg(Wnt1-cre)2Sor|mKIAA4009	E2F transcription factor 1	protein-coding	4.0	2.5	13.5	0.0	10.0	3.0
Merged-chr3-105017600-4	chr3	105017089	105018089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 3 of 5)	intron (NM_030249, intron 3 of 5)	35364.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58393672-4	chr1	58393145	58394145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025824, intron 1 of 11)	CpG	509.0	NM_025824	66882.0	Mm.21848	NM_025824	ENSMUSG00000051223	Bzw1	1200015E15Rik|mKIAA0005	basic leucine zipper and W2 domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24170532-2	chr17	24170043	24171043	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361532)	promoter-TSS (NM_001361532)	-865.0	NM_001361531	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	108.0	281.5	162.0	75.0	278.5	176.5
Merged-chr7-80014037-4	chr7	80013524	80014524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10790.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	9.0	20.5	9.5	8.5	30.5	18.0
Merged-chr19-41345152-4	chr19	41344638	41345638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	39932.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184619195-2	chr1	184618695	184619695	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61504.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66795613-4	chr9	66795135	66796135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177583)	promoter-TSS (NM_177583)	-212.0	NM_177583	208117.0	Mm.41291	NM_177583	ENSMUSG00000032375	Aph1b	2310057K14Rik|Aph1c	aph1 homolog B, gamma secretase subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55733982-4	chr16	55733454	55734454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88184.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-40917197-2	chr14	40916697	40917697	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 3 of 8)	intron (NM_145928, intron 3 of 8)	-24232.0	NM_177816	328381.0	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165617374-4	chr1	165616853	165617853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	17188.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39907321-2	chr1	39906821	39907821	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 2 of 29)	intron (NM_001252202, intron 2 of 29)	6408.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43757370-4	chr4	43756847	43757847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040667, exon 3 of 4)	non-coding (NR_040667, exon 3 of 4)	5488.0	NR_040667	319973.0	Mm.233955	NR_040667		A630077J23Rik	-	RIKEN cDNA A630077J23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-145140118-4	chr5	145139673	145140673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033313)	promoter-TSS (NM_001033313)	-84.0	NM_001033313	231887.0	Mm.188851	NM_001033313	ENSMUSG00000029623	Pdap1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding	18.5	97.0	94.5	18.0	92.5	97.5
Merged-chr9-31262422-4	chr9	31261928	31262928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-8973.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103436487-4	chr11	103435992	103436992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-23828.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105699941-4	chr5	105699443	105700443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178701)	promoter-TSS (NM_178701)	-26.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	130.5	319.0	189.0	111.0	315.5	170.0
Merged-chr5-101999240-4	chr5	101998770	101999770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	70651.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	84.0	145.5	152.0	97.0	254.5	167.0
Merged-chr6-134035254-4	chr6	134034762	134035762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007961)	promoter-TSS (NM_007961)	-438.0	NM_001303102	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	308.0	843.0	690.0	291.0	785.0	614.5
Merged-chr2-18681112-4	chr2	18680590	18681590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007552, intron 1 of 9)	CpG	4072.0	NM_007552	12151.0	Mm.289584	NM_007552	ENSMUSG00000026739	Bmi1	AW546694|Bmi-1|Pcgf4	Bmi1 polycomb ring finger oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-126849136-4	chr6	126848653	126849653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025358)	promoter-TSS (NM_025358)	-9.0	NM_025358	66108.0	Mm.29939	NM_025358	ENSMUSG00000000399	Ndufa9	1010001N11Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56271879-2	chr17	56271379	56272379	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_174989, exon 2 of 2)	exon (NM_174989, exon 2 of 2)	4888.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54754128-4	chr14	54753638	54754638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	27748.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	124.5	312.0	197.5	113.0	233.0	156.5
Merged-chr5-140649148-4	chr5	140648645	140649645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175274)	promoter-TSS (NM_175274)	-114.0	NM_175274	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55838845-4	chr16	55838371	55839371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030612)	promoter-TSS (NM_030612)	-230.0	NM_001159395	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-121338325-4	chr6	121337834	121338834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_144512)	TTS (NM_144512)	-4742.0	NM_001347433	14411.0	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22461181-4	chr16	22460677	22461677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21607.0	NM_023794	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88864035-4	chr15	88863546	88864546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145478, intron 4 of 5)	intron (NM_145478, intron 4 of 5)	1852.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19628222-4	chr3	19627736	19628736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16224.0	NM_001081281	381485.0	Mm.35419	NM_001081281	ENSMUSG00000060913	Trim55	D830041C10Rik|Murf2|Rnf29	tripartite motif-containing 55	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3809939-2	chr12	3809439	3810439	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	2779.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99381414-4	chr7	99380947	99381947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362166)	promoter-TSS (NM_001362166)	-71.0	NM_001362168	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35466895-3	chr8	35466373	35467373	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026067, exon 7 of 7)	3' UTR (NM_026067, exon 7 of 7)	28660.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	19.0	49.5	26.0	53.5	197.5	165.5
Merged-chr9-88439057-4	chr9	88438560	88439560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172926)	promoter-TSS (NM_172926)	-109.0	NM_172926	244962.0	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69724900-4	chr12	69724374	69725374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145443)	promoter-TSS (NM_145443)	0.0	NM_145443	217666.0	Mm.103362	NM_145443	ENSMUSG00000020988	L2hgdh	BC016226	L-2-hydroxyglutarate dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-119007542-4	chr14	119007017	119008017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081252, intron 33 of 38)	ORR1D2|LTR|ERVL-MaLR	69585.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	18.0	23.0	12.0	9.0	20.0	14.5
Merged-chr10-78246313-2	chr10	78245813	78246813	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-1671.0	NM_001081055	216131.0	Mm.27539	NM_001081055	ENSMUSG00000000374	Trappc10	B230307C21Rik|Gm870|Tmem1|b2b2416Clo|b2b2613Clo	trafficking protein particle complex 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122269386-4	chr5	122268896	122269896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4936.0	NM_001039153	654470.0	Mm.28804	NM_001039153	ENSMUSG00000038593	Tctn1	G730031O11Rik|Tect1	tectonic family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11254419-4	chr16	11253918	11254918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130008)	promoter-TSS (NM_001130008)	27.0	NR_035466	100316833.0		NR_035466	ENSMUSG00000088544	Mir1945	mir-1945|mmu-mir-1945	microRNA 1945	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109045726-4	chr3	109045208	109046208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18101.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99242143-2	chr5	99241643	99242643	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 2 of 13)	intron (NM_181318, intron 2 of 13)	10784.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191242290-3	chr1	191241786	191242786	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17832.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58217774-4	chr13	58217266	58218266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-2113.0	NM_026842	56085.0	Mm.182053	NM_026842	ENSMUSG00000005312	Ubqln1	1110046H03Rik|1810030E05Rik|AU019746|C77538|D13Ertd372e|Da41|Dsk2|Plic-1|Plic1|Xdrp1	ubiquilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39846819-2	chr1	39846319	39847319	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040465, intron 1 of 4)	intron (NR_040465, intron 1 of 4)	511.0	NR_040465	73426.0	Mm.396239	NR_040465	ENSMUSG00000101634	1700066B17Rik	-	RIKEN cDNA 1700066B17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-144252341-4	chr5	144251833	144252833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163709, intron 1 of 2)	intron (NM_001163709, intron 1 of 2)	-2892.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-145118601-4	chr3	145118152	145119152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025714)	promoter-TSS (NM_025714)	52.0	NM_025714	52184.0	Mm.259105	NM_025714	ENSMUSG00000028256	Odf2l	4733401D09Rik|9630045K08Rik|D3Ertd250e	outer dense fiber of sperm tails 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-21633979-4	chr3	21633476	21634476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-442676.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-181017487-4	chr1	181016994	181017994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001312918)	promoter-TSS (NM_001312918)	75.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-56160601-2	chr9	56160101	56161101	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019793, intron 1 of 6)	CpG	469.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-77515204-4	chr1	77514708	77515708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007936)	promoter-TSS (NM_007936)	-120.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	0.0	0.5	0.0	2.0	0.0	1.5
Merged-chr5-32131139-1	chr5	32130639	32131639	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-5333.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.0	2.5	0.0	0.0	0.0	0.0
Merged-chr5-110135729-4	chr5	110135224	110136224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289580)	promoter-TSS (NM_001289580)	-106.0	NM_172717	231600.0	Mm.30264	NM_172717	ENSMUSG00000014668	Chfr	5730484M20Rik|C230082M18|RNF116	checkpoint with forkhead and ring finger domains	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83144406-2	chr8	83143898	83144898	+	1000.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-20954.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	37.5	64.0	37.0	127.0	271.0	169.5
Merged-chr2-31771396-4	chr2	31770898	31771898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	11225.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134469071-4	chr4	134468562	134469562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019641, intron 1 of 4)	CpG	742.0	NM_019641	16765.0	Mm.378957	NM_019641	ENSMUSG00000028832	Stmn1	19k|Lag|Lap18|Op18|P18|P19|Pig|Pp17|Pp18|Pp19|Pr22|Smn	stathmin 1	protein-coding	7.5	29.5	12.5	6.5	23.5	14.5
Merged-chr15-102203214-1	chr15	102202714	102203714	+	1000.0	f0_c57.idr	promoter-TSS (NM_001289694)	promoter-TSS (NM_001289694)	-431.0	NM_001289694	68744.0	Mm.352945	NM_153194	ENSMUSG00000046897	Zfp740	1110034O07Rik|AW548228|Znf740	zinc finger protein 740	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-78732842-4	chr14	78732355	78733355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081336)	promoter-TSS (NM_001081336)	-126.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57440167-2	chr17	57439667	57440667	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 12 of 22)	Lx5c|LINE|L1	81481.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.0	7.0	0.0	0.0	4.0	0.0
Merged-chr2-104817001-4	chr2	104816505	104817505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001123327)	promoter-TSS (NM_001123327)	-309.0	NM_001123327	99003.0	Mm.274314	NM_001123327	ENSMUSG00000074994	Qser1	4732486I23Rik|AI502974	glutamine and serine rich 1	protein-coding	5.5	9.5	2.0	5.5	16.5	25.5
Merged-chr19-60861441-4	chr19	60860941	60861941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362384)	promoter-TSS (NM_001362384)	-13.0	NM_053198	94281.0	Mm.48179	NM_053198	ENSMUSG00000063698	Sfxn4	-	sideroflexin 4	protein-coding	29.5	58.5	51.0	47.0	59.5	61.0
Merged-chr19-40693511-4	chr19	40693031	40694031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	33761.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	26.5	125.5	114.5	58.5	173.0	101.5
Merged-chr11-120041431-1	chr11	120040931	120041931	+	1000.0	f1_balb.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	350.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	185.5	283.0	236.0	184.0	412.5	292.0
Merged-chr6-125041239-4	chr6	125040755	125041755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133345, intron 1 of 7)	intron (NM_133345, intron 1 of 7)	1407.0	NM_133345	28019.0	Mm.262547	NM_133345	ENSMUSG00000030330	Ing4	D6Wsu147e|D6Xrf92|p29ING4	inhibitor of growth family, member 4	protein-coding	28.5	47.0	45.0	30.5	62.0	30.0
Merged-chr10-80935534-4	chr10	80935064	80936064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5473.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82910605-4	chr18	82910111	82911111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183033)	promoter-TSS (NM_183033)	-268.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127325301-2	chr10	127324805	127325805	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359657)	promoter-TSS (NM_001359657)	-337.0	NM_001359657	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	0.0	2.0	10.0	8.5	3.0	2.0
Merged-chr1-127868802-4	chr1	127868307	127869307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178690)	promoter-TSS (NM_178690)	34.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	13.5	78.0	57.5	12.0	63.0	26.5
Merged-chr17-33910158-4	chr17	33909662	33910662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045146)	promoter-TSS (NR_045146)	561.0	NM_001199733	13163.0	Mm.271809	NM_007829	ENSMUSG00000002307	Daxx	-	Fas death domain-associated protein	protein-coding	74.5	160.5	53.5	48.5	127.5	78.5
Merged-chr5-107987118-7	chr5	107986617	107987617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026062)	promoter-TSS (NM_026062)	-40.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	17.5	22.5	28.5	28.0	31.0	30.5
Merged-chr11-3133590-2	chr11	3133094	3134094	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 29 of 32)	intron (NM_030207, intron 29 of 32)	9573.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114891340-4	chr11	114890846	114891846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170758, intron 1 of 6)	Lx8|LINE|L1	1305.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	51.0	154.0	96.5	54.5	146.5	96.5
Merged-chr3-96197615-4	chr3	96197118	96198118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026975)	promoter-TSS (NM_026975)	-32.0	NM_026975	69168.0	Mm.104531	NM_026975	ENSMUSG00000015943	Bola1	1810037G04Rik	bolA-like 1 (E. coli)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9179768-2	chr13	9179268	9180268	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85887.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-28654433-4	chr12	28653916	28654916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286865, intron 3 of 7)	intron (NM_001286865, intron 3 of 7)	4814.0	NM_001286865	19819.0	Mm.10152	NM_011275	ENSMUSG00000020630	Rnaseh1	-	ribonuclease H1	protein-coding	24.5	47.5	54.5	22.5	40.0	40.0
Merged-chr11-3266403-4	chr11	3265881	3266881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007879)	promoter-TSS (NM_007879)	82.0	NM_007879	13494.0	Mm.3250	NM_007879	ENSMUSG00000020457	Drg1	AA408859|AI132520|DRG-1|NEDD-3|Nedd3	developmentally regulated GTP binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80292391-4	chr10	80291915	80292915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310726)	promoter-TSS (NM_001310726)	-16.0	NM_009091	20054.0	Mm.643	NM_009091	ENSMUSG00000063457	Rps15	rig	ribosomal protein S15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-20894360-4	chr2	20893859	20894859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128084, intron 3 of 24)	MTD|LTR|ERVL-MaLR	73362.0	NM_001081364	71435.0	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-130903933-4	chr7	130903433	130904433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133942, intron 6 of 9)	intron (NM_133942, intron 6 of 9)	-4335.0	NR_106028	102466219.0		NR_106028	ENSMUSG00000104914	Mir7061	mmu-mir-7061	microRNA 7061	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59189757-2	chr4	59189257	59190257	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011673, intron 1 of 8)	CpG	207.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83646570-4	chr17	83646094	83647094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14699.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145111598-4	chr7	145111104	145112104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96515.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	314.0	798.5	558.5	314.5	672.5	564.0
Merged-chr4-130663250-4	chr4	130662777	130663777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159604)	promoter-TSS (NM_001159604)	-44.0	NM_030722	80912.0	Mm.440206	NM_030722	ENSMUSG00000028580	Pum1	AA517475|Pumm|mKIAA0099	pumilio RNA-binding family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76604159-4	chr16	76603653	76604653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B2|LTR|ERVK	55358.0	NR_155449	102632730.0		NR_155449		Gm30726	-	predicted gene, 30726	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85619692-2	chr12	85619192	85620192	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 2 of 3)	intron (NM_001205053, intron 2 of 3)	19674.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11775111-1	chr11	11774611	11775611	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	33851.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	0.0	6.0	0.0	0.0	5.5	2.0
Merged-chr2-61255797-2	chr2	61255297	61256297	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-280646.0	NR_045335	100038493.0	Mm.388076	NR_045335	ENSMUSG00000075325	Gm13582	-	predicted gene 13582	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79633635-4	chr12	79633116	79634116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	291117.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	2.5	0.5	28.5	58.5	16.5
Merged-chr2-169700322-4	chr2	169699803	169700803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	66657.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	11.0	9.5	5.5	0.0	4.0	3.5
Merged-chr5-24908947-4	chr5	24908438	24909438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170556)	promoter-TSS (NM_001170556)	-429.0	NM_001170555	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25548022-4	chr14	25547521	25548521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 3 of 23)	intron (NM_183208, intron 3 of 23)	13582.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191576042-4	chr1	191575532	191576532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029766)	promoter-TSS (NM_029766)	396.0	NM_001306204	77065.0	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	111.5	190.5	151.5	140.5	206.5	164.5
Merged-chr6-50114443-4	chr6	50113946	50114946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361248, intron 1 of 13)	intron (NM_001361248, intron 1 of 13)	3586.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	90.5	133.5	119.0	98.5	128.5	103.0
Merged-chr17-13685837-4	chr17	13685341	13686341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74700.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	0.0	1.5	2.0	2.0	0.0	0.0
Merged-chr19-53248304-4	chr19	53247840	53248840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_036590)	TTS (NR_036590)	6865.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120518281-4	chr11	120517794	120518794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12433.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-40692667-4	chr11	40692177	40693177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134017)	promoter-TSS (NM_134017)	5.0	NM_134017	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	50.0	70.0	93.5	44.0	89.5	77.0
Merged-chr19-37207562-4	chr19	37207040	37208040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290828)	promoter-TSS (NM_001290828)	-5.0	NM_027314	69104.0	Mm.175989	NM_027314	ENSMUSG00000023307	March5	1810015H18Rik|2310008I22Rik|2700055A20Rik|5730499H23Rik|E130202O05Rik|MARCH-V|MITOL|Marchv|Rnf153	membrane-associated ring finger (C3HC4) 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-83645201-4	chr10	83644693	83645693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145220, intron 1 of 20)	intron (NM_145220, intron 1 of 20)	3471.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81109925-4	chr13	81109441	81110441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	145867.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121705048-5	chr9	121704579	121705579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178677)	promoter-TSS (NM_178677)	-50.0	NM_001164562	215474.0	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25862144-4	chr15	25861649	25862649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 1 of 8)	intron (NM_001034851, intron 1 of 8)	18851.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33347339-4	chr16	33346821	33347821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33415.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116857826-4	chr3	116857328	116858328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1739.0	NM_001113478	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	2.0	0.0	0.0	0.0	2.0	0.5
Merged-chr18-46599069-4	chr18	46598539	46599539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010120, intron 2 of 2)	intron (NM_010120, intron 2 of 2)	1335.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31157165-2	chr6	31156665	31157665	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 2 of 3)	intron (NR_110471, intron 2 of 3)	61309.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-72979784-4	chr2	72979280	72980280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001098425)	promoter-TSS (NM_001098425)	348.0	NR_045269	100503849.0	Mm.389285	NM_183265		Sp3os	1700011J10Rik	trans-acting transcription factor 3, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107595192-2	chr3	107594692	107595692	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007441, exon 1 of 4)	exon (NM_007441, exon 1 of 4)	161.0	NM_007441	11694.0	Mm.10112	NM_007441	ENSMUSG00000014603	Alx3	-	aristaless-like homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32563810-4	chr11	32563301	32564301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	30535.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	20.5	20.0	33.5	11.0	28.0	25.0
Merged-chr6-83655527-2	chr6	83655035	83656035	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016751, intron 1 of 6)	intron (NM_016751, intron 1 of 6)	581.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	68.0	96.0	123.0	52.0	93.0	141.5
Merged-chr14-37135913-2	chr14	37135413	37136413	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199122)	promoter-TSS (NM_001199122)	-591.0	NM_078478	66092.0	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75000574-4	chr18	75000067	75001067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028552).2	promoter-TSS (NR_028552).2	90.0	NM_001002239	319195.0	Mm.276337	NM_001002239	ENSMUSG00000062328	Rpl17	-	ribosomal protein L17	protein-coding	131.0	346.0	355.0	95.5	296.0	223.0
Merged-chr16-14358727-4	chr16	14358211	14359211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2847.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	23.5	30.0	35.0	23.0	47.0	31.5
Merged-chr14-62838576-4	chr14	62838076	62839076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_106174)	TTS (NR_106174)	855.0	NR_106174	102465889.0		NR_106174	ENSMUSG00000099245	Mir8098	Gm27462|mmu-mir-8098	microRNA 8098	ncRNA	5.5	5.0	6.5	1.5	4.0	2.5
Merged-chr1-39530422-4	chr1	39529910	39530910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5291.0	NM_028043	52846.0	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34206363-4	chr19	34205857	34206857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	-11151.0	NM_001360719	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	9.5	16.5	6.5	9.5	16.5	7.5
Merged-chr12-51678947-4	chr12	51678444	51679444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172098, intron 1 of 15)	RSINE1|SINE|B4	-12022.0	NM_001329699	11782.0	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35056807-4	chr9	35056294	35057294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-59934.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	57.5	124.5	77.0	46.0	175.5	96.5
Merged-chr10-78009364-4	chr10	78008873	78009873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358793, intron 1 of 21)	CpG	434.0	NM_008826	18641.0	Mm.269649	NM_008826	ENSMUSG00000020277	Pfkl	AA407869|ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver, B-type	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-56345878-4	chr12	56345372	56346372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145442)	promoter-TSS (NM_145442)	22.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67713247-4	chr10	67712744	67713744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-141285.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-72837558-3	chr15	72837038	72838038	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164641, intron 17 of 17)	intron (NM_001164641, intron 17 of 17)	-27214.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	49.0	80.0	39.0	28.5	60.0	37.0
Merged-chr2-59129673-2	chr2	59129173	59130173	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 1 of 13)	intron (NM_001362394, intron 1 of 13)	31010.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157428598-4	chr2	157428104	157429104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 1 of 13)	intron (NM_001025395, intron 1 of 13)	4311.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	26.5	41.5	21.0	25.5	72.0	44.5
Merged-chr11-79606550-1	chr11	79606050	79607050	+	1000.0	f1_c57bl6.idr	TTS (NR_003283)	TTS (NR_003283)	15338.0	NM_175543	268451.0	Mm.130656	NM_175543	ENSMUSG00000017639	Rab11fip4	A730072L08Rik|RAB11-FIP4|mKIAA1821	RAB11 family interacting protein 4 (class II)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8766234-4	chr10	8765783	8766783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	119787.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	30.0	49.5	47.0	23.5	73.5	75.5
Merged-chr11-59164851-2	chr11	59164351	59165351	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1106.0	NM_173785	216792.0	Mm.266175	NM_173785	ENSMUSG00000049287	Iba57	4930543L23Rik|A230051G13Rik|C1orf69	IBA57 homolog, iron-sulfur cluster assembly	protein-coding	13.5	29.0	20.5	22.0	25.5	15.5
Merged-chr2-33130722-1	chr2	33130222	33131222	+	1000.0	f0_balb.idr	promoter-TSS (NM_001355200)	promoter-TSS (NM_001355200)	-103.0	NM_001355200	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73763602-4	chr13	73763086	73764086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011390)	promoter-TSS (NM_011390)	-74.0	NM_001360694	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138967548-4	chr1	138966986	138967986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181347)	promoter-TSS (NM_181347)	-235.0	NM_181347	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76307410-4	chr15	76306909	76307909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153122)	promoter-TSS (NM_153122)	-164.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-87683045-4	chr4	87682532	87683532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	123291.0	NM_001286158	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11708630-4	chr2	11708145	11709145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271499, intron 1 of 6)	intron (NM_001271499, intron 1 of 6)	2933.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-89524820-4	chr4	89524319	89525319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-163379.0	NM_175647	242523.0	Mm.130167	NM_175647	ENSMUSG00000043753	Dmrta1	Dmrt4	doublesex and mab-3 related transcription factor like family A1	protein-coding	0.0	0.0	0.0	1.0	2.5	1.0
Merged-chr3-105721991-4	chr3	105721509	105722509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16551.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	7.5	3.0	4.5	8.5	7.5	2.5
Merged-chr2-154549764-4	chr2	154549267	154550267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029305, exon 3 of 3)	exon (NM_029305, exon 3 of 3)	863.0	NM_029305	75480.0	Mm.440434	NM_029305	ENSMUSG00000038523	1700003F12Rik	-	RIKEN cDNA 1700003F12 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-36951531-2	chr4	36951031	36952031	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001165999, exon 1 of 8)	5' UTR (NM_001165999, exon 1 of 8)	213.0	NM_001165999	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-37870654-4	chr6	37870152	37871152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001272064)	promoter-TSS (NM_001272064)	-159.0	NM_001272064	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87207484-2	chr1	87206984	87207984	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009604, exon 5 of 12)	exon (NM_009604, exon 5 of 12)	1673.0	NM_009604	11449.0	Mm.2810	NM_009604	ENSMUSG00000026253	Chrng	Achr-3|Acrg	cholinergic receptor, nicotinic, gamma polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-83817614-4	chr18	83817097	83818097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	268965.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25403506-2	chr14	25403006	25404006	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55679.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127119286-4	chr7	127118777	127119777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133686, intron 1 of 3)	intron (NM_133686, intron 1 of 3)	2752.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120209596-6	chr10	120209131	120210131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026617, intron 1 of 6)	L1MB2|LINE|L1	805.0	NM_026617	68212.0	Mm.157426	NM_026617	ENSMUSG00000020225	Tmbim4	0610007H07Rik|AU022431	transmembrane BAX inhibitor motif containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59506664-1	chr11	59506164	59507164	+	1000.0	f0_balb.idr	promoter-TSS (NM_001130529)	promoter-TSS (NM_001130529)	-24.0	NM_172941	268417.0	Mm.239793	NM_172941	ENSMUSG00000020472	Zkscan17	Nizp1|Zfp496|Znf496	zinc finger with KRAB and SCAN domains 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6452287-2	chr2	6451787	6452787	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	99551.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26850324-2	chr17	26849824	26850824	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-8759.0	NM_008700	18091.0	Mm.41974	NM_008700	ENSMUSG00000015579	Nkx2-5	Csx|Nkx-2.5|Nkx2.5|tinman	NK2 homeobox 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-29993104-4	chr16	29992525	29993525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-13901.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65071471-2	chr18	65070971	65071971	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031881, intron 1 of 29)	intron (NM_031881, intron 1 of 29)	47944.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	4.0	6.0	2.5	1.0	2.5	0.0
Merged-chr12-24651232-4	chr12	24650733	24651733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178357)	promoter-TSS (NM_178357)	-138.0	NM_178357	194655.0	Mm.9616	NM_178357	ENSMUSG00000020653	Klf11	9830142A17|D12Ertd427e|Tieg2|Tieg2b|Tieg3	Kruppel-like factor 11	protein-coding	134.5	296.0	260.0	107.0	291.0	338.0
Merged-chr16-56037790-4	chr16	56037290	56038290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029092)	promoter-TSS (NM_029092)	-16.0	NM_029092	52575.0	Mm.288742	NM_029092	ENSMUSG00000044763	Trmt10c	1300018J16Rik|D16Ertd454e|Rg9mtd1|Rnmtd1	tRNA methyltransferase 10C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30628844-4	chr13	30628354	30629354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	13811.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135733174-2	chr1	135732674	135733674	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007791, intron 1 of 5)	intron (NM_007791, intron 1 of 5)	4007.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64189453-4	chr15	64188955	64189955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	123218.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	2.5	9.5	2.5	8.0	7.5	1.5
Merged-chr3-108571654-4	chr3	108571223	108572223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025444)	promoter-TSS (NM_025444)	24.0	NM_025444	99730.0	Mm.24431	NM_025444	ENSMUSG00000048100	Taf13	1810004N01Rik|2010309N11Rik|AI847295|TAFII18	TATA-box binding protein associated factor 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102806752-4	chr14	102806252	102807252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	175880.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7873025-4	chr9	7872518	7873518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007464, exon 1 of 9)	5' UTR (NM_007464, exon 1 of 9)	152.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-61228474-4	chr19	61227980	61228980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009970)	promoter-TSS (NM_009970)	-62.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	190.0	440.0	297.5	149.0	447.5	246.0
Merged-chr7-116093238-4	chr7	116092740	116093740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019772)	promoter-TSS (NM_019772)	-91.0	NR_029433	69350.0	Mm.440425	NR_029433	ENSMUSG00000087621	1700003G18Rik	2610312K03Rik	RIKEN cDNA 1700003G18 gene	ncRNA	3.0	4.0	4.0	5.5	14.0	5.5
Merged-chr13-51847420-3	chr13	51846920	51847920	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011817, exon 2 of 4)	exon (NM_011817, exon 2 of 4)	745.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160210032-4	chr2	160209555	160210555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117439.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61648868-4	chr14	61648375	61649375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	CpG	-16765.0	NR_029733	387174.0		NR_029733	ENSMUSG00000093007	Mir15a	Mirn15a|mir-15a|mmu-mir-15a	microRNA 15a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31068978-4	chr2	31068486	31069486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	27514.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122534244-4	chr14	122533740	122534740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144844)	promoter-TSS (NM_144844)	-88.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60931961-4	chr11	60931445	60932445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027800)	promoter-TSS (NR_027800)	-78.0	NR_027800	24082.0	Mm.46270	NM_025293	ENSMUSG00000042549	Map2k3os	F3-1|Gm16516|Gtlf3a	mitogen-activated protein kinase kinase 3, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-58660046-4	chr18	58659572	58660572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025478, intron 1 of 4)	intron (NM_025478, intron 1 of 4)	590.0	NM_025478	66307.0	Mm.182574	NM_025478	ENSMUSG00000024601	Isoc1	2610034N03Rik	isochorismatase domain containing 1	protein-coding	21.5	44.5	38.0	13.0	30.0	29.5
Merged-chr11-121083108-4	chr11	121082602	121083602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1963.0	NM_145373	209588.0	Mm.69553	NM_145373	ENSMUSG00000025165	Sectm1a	BC010462	secreted and transmembrane 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127522400-4	chr10	127521865	127522865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252316)	promoter-TSS (NM_001252316)	79.0	NM_001252316	108037.0	Mm.29890	NM_028230	ENSMUSG00000025403	Shmt2	2700043D08Rik|AA408223|AA986903|SHMT	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding	0.0	3.5	1.5	0.0	0.0	2.5
Merged-chr11-84870063-4	chr11	84869495	84870495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131201)	promoter-TSS (NR_131201)	-10.0	NR_131201	102635561.0	Mm.341797	NR_131197		Ggnbp2os	-	gametogenetin binding protein 2, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-19975152-4	chr14	19974684	19975684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285908, intron 1 of 3)	intron (NM_001285908, intron 1 of 3)	1509.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-106485202-4	chr3	106484718	106485718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028110)	promoter-TSS (NM_028110)	695.0	NR_033207	69206.0	Mm.14816	NM_001033146	ENSMUSG00000091575	2010016I18Rik	-	RIKEN cDNA 2010016I18 gene	ncRNA	13.0	22.5	31.5	6.0	36.0	13.5
Merged-chr4-132247710-4	chr4	132247203	132248203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122992, intron 3 of 10)	intron (NM_001122992, intron 3 of 10)	13846.0	NM_020273	56809.0	Mm.103489	NM_020273	ENSMUSG00000028901	Gmeb1	1110050A04Rik|AI256615|AI481278	glucocorticoid modulatory element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62578490-4	chr10	62577967	62578967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028197)	promoter-TSS (NM_028197)	-10.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61928136-4	chr8	61927643	61928643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293783)	promoter-TSS (NM_001293783)	56.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-11939735-3	chr18	11939212	11940212	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022021, intron 6 of 8)	intron (NM_022021, intron 6 of 8)	-99274.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135707981-4	chr5	135707485	135708485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 1 of 15)	intron (NM_008898, intron 1 of 15)	18840.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	59.0	159.0	86.0	47.5	162.0	98.0
Merged-chr1-85751680-4	chr1	85751190	85752190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106172)	promoter-TSS (NR_106172)	-258.0	NR_106172	102466882.0		NR_106172	ENSMUSG00000098634	Mir8096	Gm27479|mmu-mir-8096	microRNA 8096	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84856203-4	chr15	84855718	84856718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081166)	promoter-TSS (NM_001081166)	-89.0	NR_030731	271305.0	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167055816-4	chr2	167055302	167056302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033196, exon 3 of 14)	exon (NM_001033196, exon 3 of 14)	-7132.0	NR_138563	68949.0	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79333247-2	chr15	79332747	79333747	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-4876.0	NM_001199023	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115530107-4	chr5	115529526	115530526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	23350.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30943506-4	chr16	30942994	30943994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	137938.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0.5	5.0	7.5	12.5	3.0	8.5
Merged-chr17-81703127-1	chr17	81702627	81703627	+	1000.0	f0_balb.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	35260.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-103388685-4	chr12	103388178	103389178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026580)	promoter-TSS (NM_026580)	-3.0	NM_026580	68149.0	Mm.127378	NM_026580	ENSMUSG00000021203	Otub2	2010015L18Rik|4930586I02Rik|AI413508|AW557219|OTB2|OTU2	OTU domain, ubiquitin aldehyde binding 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53274214-4	chr19	53273744	53274744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19039.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82785370-4	chr18	82784873	82785873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-26334.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129196451-4	chr2	129195935	129196935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2338.0	NM_015747	20515.0	Mm.272675	NM_015747	ENSMUSG00000027397	Slc20a1	AI607883|Glvr-1|Glvr1	solute carrier family 20, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168563408-4	chr2	168562888	168563888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037177, intron 3 of 6)	intron (NM_001037177, intron 3 of 6)	26977.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-74523080-4	chr13	74522546	74523546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29096.0	NM_146231	235956.0		NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105291671-4	chr4	105291089	105292089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134242.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.0	15.0	14.5	2.0	14.5	4.5
Merged-chr17-56507827-4	chr17	56507330	56508330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4653.0	NM_011483	20834.0	Mm.76862	NM_011483	ENSMUSG00000044526	Znrf4	1700094M01Rik|Ssrzf1|spzn	zinc and ring finger 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105981036-4	chr1	105980532	105981532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151625, intron 2 of 2)	intron (NR_151625, intron 2 of 2)	9250.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107357343-4	chr3	107356852	107357852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24063.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60390822-2	chr10	60390322	60391322	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 30 of 68)	intron (NM_001252635, intron 30 of 68)	-8904.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43865478-4	chr5	43864970	43865970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3339.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	99.0	167.0	140.0	100.0	180.5	106.5
Merged-chr11-82007040-5	chr11	82006576	82007576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28501.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20110419-2	chr11	20109919	20110919	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146243, intron 1 of 8)	RSINE1|SINE|B4	2532.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	12.0	17.5	5.5	4.0	21.0	12.5
Merged-chr11-8569093-2	chr11	8568605	8569605	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	95430.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	4.5	2.0	2.5	4.5	2.0	5.5
Merged-chr1-24678610-4	chr1	24678122	24679122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310483)	promoter-TSS (NM_001310483)	78.0	NM_026719	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-44777135-4	chr17	44776649	44777649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357320)	promoter-TSS (NM_001357320)	-17.0	NM_001357320	109115.0	Mm.431327	NM_178652	ENSMUSG00000038954	Supt3	2310066G22Rik|AI315192|SPT3|SPT3L|Supt3h	suppressor of Ty 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102400673-4	chr2	102400175	102401175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020267, exon 1 of 5)	exon (NM_020267, exon 1 of 5)	225.0	NM_020267	80985.0	Mm.315002	NM_020267	ENSMUSG00000027189	Trim44	Dipb|Mc7	tripartite motif-containing 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50026940-4	chr11	50026448	50027448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 1 of 7)	intron (NM_001290750, intron 1 of 7)	1617.0	NM_001290750	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70970071-4	chr11	70969574	70970574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252413)	promoter-TSS (NM_001252413)	-101.0	NM_001276406	19069.0	Mm.288962	NM_172394	ENSMUSG00000040667	Nup88	Nup84|Prei2	nucleoporin 88	protein-coding	26.0	54.0	42.0	19.0	87.0	49.0
Merged-chr11-11788813-4	chr11	11788279	11789279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20183.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	6.0	6.5	4.0	1.0	8.0	2.5
Merged-chr2-154597616-4	chr2	154597119	154598119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021534, intron 1 of 3)	MTC|LTR|ERVL-MaLR	6054.0	NM_021534	59038.0	Mm.24673	NM_021534	ENSMUSG00000000876	Pxmp4	3010018P03Rik|Pmp24	peroxisomal membrane protein 4	protein-coding	16.0	44.5	16.5	12.0	33.5	20.0
Merged-chr3-79568057-4	chr3	79567534	79568534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162999)	promoter-TSS (NM_001162999)	-158.0	NR_152118	75879.0	Mm.410800	NR_152118		4930589L23Rik	-	RIKEN cDNA 4930589L23 gene	ncRNA	0.0	0.0	0.0	12.0	35.5	30.5
Merged-chr13-62624144-4	chr13	62623620	62624620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324406)	promoter-TSS (NM_001324406)	62.0	NM_001324406	211378.0	Mm.247448	NM_173381	ENSMUSG00000072066	6720489N17Rik	9330128I06	RIKEN cDNA 6720489N17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67873680-3	chr18	67873176	67874176	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027556, intron 41 of 45)	ORR1E|LTR|ERVL-MaLR	-59497.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	43.0	25.0	27.5	2.5	9.5	6.0
Merged-chr3-21937442-4	chr3	21936954	21937954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139198.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80071257-4	chr10	80070763	80071763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359635, intron 5 of 31)	(T)n|Simple_repeat|Simple_repeat	4176.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16257992-4	chr7	16257490	16258490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001173550, intron 1 of 1)	intron (NM_001173550, intron 1 of 1)	1348.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	72.5	154.0	100.0	45.5	142.0	115.5
Merged-chr14-73141282-2	chr14	73140782	73141782	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1228.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87910785-4	chr3	87910337	87911337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331051, intron 1 of 6)	intron (NM_001331051, intron 1 of 6)	3987.0	NM_001331052	15191.0	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	0.0	2.5	0.0	5.5	3.0	1.0
Merged-chr15-64312818-4	chr15	64312315	64313315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276462)	promoter-TSS (NM_001276462)	-142.0	NM_001276463	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-36278920-4	chr2	36278417	36279417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER44C|DNA|TcMar-Tigger	48491.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-98016984-4	chr5	98016502	98017502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133738, intron 3 of 16)	intron (NM_133738, intron 3 of 16)	13960.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	2.5	0.0	6.0	0.0	9.0	1.5
Merged-chr1-55049270-4	chr1	55048765	55049765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3505.0	NM_026424	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	28.0	20.0	8.0	9.5	15.0	3.5
Merged-chr17-87304546-4	chr17	87304053	87305053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 3 of 19)	intron (NM_028639, intron 3 of 19)	21667.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180263650-4	chr1	180263158	180264158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEb|LINE|L1	-7358.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120453790-4	chr14	120453311	120454311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_LTR|LTR|ERV1	-24650.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114928477-2	chr6	114927977	114928977	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	URR1B|DNA|hAT-Charlie	-6656.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118234647-4	chr11	118234127	118235127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	13965.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160622086-4	chr2	160621585	160622585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23812.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88207612-4	chr7	88207104	88208104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70481.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75769425-4	chr11	75768928	75769928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007873, exon 9 of 9)	3' UTR (NM_007873, exon 9 of 9)	-26381.0	NR_136933	102641247.0	Mm.411386	NR_136932		Gm12339	-	predicted gene 12339	ncRNA	1.5	5.5	1.0	0.0	8.0	4.5
Merged-chr2-84715333-4	chr2	84714833	84715833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144887)	promoter-TSS (NM_144887)	-169.0	NM_144887	228136.0	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	46.5	79.5	62.0	52.5	132.5	78.5
Merged-chr6-3496516-2	chr6	3496016	3497016	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1877.0	NM_001167751	73288.0	Mm.45539	NM_024260	ENSMUSG00000001376	Vps50	1700034M03Rik|8430415E05Rik|BLM|C87205|Ccdc132|mKIAA1861	VPS50 EARP/GARPII complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69912747-2	chr11	69912247	69913247	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013414, intron 28 of 28)	ID_B1|SINE|B4	-1287.0	NM_001357906	56310.0	Mm.477738	NM_019726	ENSMUSG00000023170	Gps2	AI505953|GPS-2	G protein pathway suppressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83244292-4	chr8	83243776	83244776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111304, intron 9 of 20)	intron (NM_001111304, intron 9 of 20)	-46072.0	NM_009463	22227.0	Mm.4177	NM_009463	ENSMUSG00000031710	Ucp1	AI385626|Slc25a7|Ucp	uncoupling protein 1 (mitochondrial, proton carrier)	protein-coding	41.0	83.5	62.5	34.0	45.0	10.0
Merged-chr12-105027895-4	chr12	105027406	105028406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3235.0	NR_037229	100526471.0		NR_037229	ENSMUSG00000106366	Mir3069	mir-3069|mmu-mir-3069	microRNA 3069	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20208279-4	chr13	20207782	20208782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 3 of 21)	intron (NM_080288, intron 3 of 21)	117775.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	31.5	37.5	34.0	40.0	49.0	47.5
Merged-chr3-122275231-2	chr3	122274731	122275731	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153806, exon 2 of 7)	exon (NM_153806, exon 2 of 7)	817.0	NM_153806	99480.0	Mm.398647	NM_153806	ENSMUSG00000039756	Dnttip2	4930588M11Rik|AA408582|AU014960|HSU15552	deoxynucleotidyltransferase, terminal, interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51209978-4	chr3	51209487	51210487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-14460.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171281793-4	chr1	171281295	171282295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008911)	promoter-TSS (NM_008911)	-609.0	NM_008911	19044.0	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	61.5	123.5	99.5	55.5	164.0	114.5
Merged-chr13-111807661-1	chr13	111807161	111808161	+	1000.0	f1_balb.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	1332.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	35.0	166.0	94.0	60.0	183.5	84.0
Merged-chr10-78298300-4	chr10	78297810	78298810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053014, intron 2 of 9)	intron (NM_053014, intron 2 of 9)	41897.0	NR_106119	102465765.0		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100434382-4	chr7	100433859	100434859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 23 of 32)	intron (NM_001017985, intron 23 of 32)	-38632.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	17.5	53.5	19.5	26.0	40.5	17.5
Merged-chr7-6156183-4	chr7	6155674	6156674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013012)	promoter-TSS (NM_001013012)	-203.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42679460-2	chr10	42678960	42679960	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172416, intron 1 of 5)	intron (NM_172416, intron 1 of 5)	544.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-29968321-4	chr14	29967838	29968838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019979)	promoter-TSS (NM_019979)	-42.0	NM_019979	80795.0	Mm.104491	NM_019979	ENSMUSG00000042682	Selenok	1110001C03Rik|AA673253|HSPC030|Hsp30|Selk	selenoprotein K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117996340-4	chr2	117995831	117996831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	114871.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	59.5	137.0	112.0	160.0	261.0	167.0
Merged-chr17-32350671-4	chr17	32350169	32351169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017476)	promoter-TSS (NM_017476)	-92.0	NM_017476	54194.0	Mm.281005	NM_017476	ENSMUSG00000002625	Akap8l	HAP95|Nakap95	A kinase (PRKA) anchor protein 8-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-54560241-4	chr9	54559721	54560721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019686)	promoter-TSS (NM_019686)	-142.0	NM_019686	56506.0	Mm.42192	NM_019686	ENSMUSG00000037493	Cib2	2810434I23Rik|AI449053	calcium and integrin binding family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13158467-2	chr8	13157967	13158967	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317353)	promoter-TSS (NM_001317353)	-694.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34846584-4	chr19	34846059	34847059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114339, intron 1 of 6)	intron (NM_001114339, intron 1 of 6)	-25786.0	NR_029783	723826.0		NR_029783	ENSMUSG00000065594	Mir107	Mirn107|mir-107|mmu-mir-107	microRNA 107	ncRNA	19.5	28.0	28.0	10.0	24.0	15.0
Merged-chr15-100677947-4	chr15	100677424	100678424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033612, intron 6 of 7)	intron (NM_033612, intron 6 of 7)	-8424.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	26.5	25.0	34.0	8.0	43.0	30.5
Merged-chr16-95831741-4	chr16	95831225	95832225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040485, exon 4 of 4)	non-coding (NR_040485, exon 4 of 4)	66988.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-115090201-4	chr13	115089694	115090694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134058)	promoter-TSS (NM_134058)	-36.0	NM_134058	105083.0	Mm.486295	NM_134058	ENSMUSG00000042275	Pelo	AA409897|AI852218	pelota mRNA surveillance and ribosome rescue factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32139693-5	chr5	32139216	32140216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008037, intron 1 of 3)	intron (NM_008037, intron 1 of 3)	3244.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	26.5	103.0	68.0	33.5	123.5	66.0
Merged-chr4-149773688-3	chr4	149773202	149774202	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027460, intron 1 of 6)	CpG	565.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	89.0	245.5	182.5	85.0	261.5	160.5
Merged-chr6-87809320-4	chr6	87808819	87809819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104478, intron 1 of 2)	intron (NR_104478, intron 1 of 2)	438.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3493275-4	chr5	3492784	3493784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-50549.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	3.0	2.0	4.0	4.5	2.5	1.0
Merged-chr11-111066071-4	chr11	111065589	111066589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008425)	promoter-TSS (NM_008425)	-75.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	53.5	83.5	75.5	46.0	54.0	47.0
Merged-chr13-12129271-2	chr13	12128771	12129771	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22326.0	NM_023868	20191.0	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73803538-4	chr13	73803034	73804034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 17 of 24)	intron (NM_001360694, intron 17 of 24)	39837.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3174025-9	chr11	3173491	3174491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 6 of 32)	intron (NM_030207, intron 6 of 32)	19472.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81182871-4	chr10	81182354	81183354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190474)	promoter-TSS (NM_001190474)	-153.0	NM_001190474	13144.0	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-11265966-4	chr12	11265482	11266482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177331)	promoter-TSS (NM_177331)	96.0	NM_025695	67241.0	Mm.173953	NM_025695	ENSMUSG00000020608	Smc6	2810489L22Rik|3830418C19Rik|AA990493|AU018782|AW742439|SMC-6|Smc6l1|mKIAA4103	structural maintenance of chromosomes 6	protein-coding	23.0	49.5	23.5	16.5	29.0	15.5
Merged-chr16-38450407-2	chr16	38449907	38450907	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007414, exon 2 of 4)	exon (NM_007414, exon 2 of 4)	2282.0	NM_007414	11544.0	Mm.20047	NM_007414	ENSMUSG00000002844	Adprh	Arh1	ADP-ribosylarginine hydrolase	protein-coding	0.0	3.5	1.0	0.0	0.0	0.0
Merged-chr10-69213662-4	chr10	69213133	69214133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331193)	promoter-TSS (NM_001331193)	439.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117389078-4	chr5	117388576	117389576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028128)	promoter-TSS (NM_028128)	-53.0	NM_028128	72151.0	Mm.27997	NM_028128	ENSMUSG00000029363	Rfc5	2610020K06Rik|2610209F07Rik|36.5kDa|36kDa|Recc5	replication factor C (activator 1) 5	protein-coding	2.0	6.5	4.0	3.5	7.0	13.0
Merged-chr2-93649675-2	chr2	93649175	93650175	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007442, intron 1 of 3)	intron (NM_007442, intron 1 of 3)	7241.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103310609-4	chr15	103310136	103311136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030720)	promoter-TSS (NM_030720)	-198.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110932521-4	chr12	110932008	110933008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175336, intron 9 of 20)	B1F|SINE|Alu	43244.0	NM_001081057	104859.0	Mm.35583	NM_175336	ENSMUSG00000021275	Tecpr2	4930573I19Rik|AI604920|mKIAA0297	tectonin beta-propeller repeat containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-52604933-4	chr12	52604422	52605422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2600.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	93.0	205.0	182.5	119.0	216.0	160.5
Merged-chr2-172401245-4	chr2	172400709	172401709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080820, intron 1 of 6)	intron (NM_001080820, intron 1 of 6)	7415.0	NM_001276423	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	7.0	14.0	8.5	5.0	15.0	11.5
Merged-chr7-46845801-4	chr7	46845311	46846311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102727)	promoter-TSS (NR_102727)	7.0	NR_102727	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17947401-4	chr10	17946896	17947896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033432, intron 1 of 3)	CpG	671.0	NM_001033432	380629.0	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132091872-2	chr2	132091372	132092372	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355431, intron 3 of 6)	ORR1D2|LTR|ERVL-MaLR	53236.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-60528015-4	chr3	60527538	60528538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	26859.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81112718-4	chr15	81112226	81113226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	-7679.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	54.0	185.0	121.5	69.0	103.5	96.5
Merged-chr4-105703610-4	chr4	105703119	105704119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-537594.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102497435-4	chr5	102496937	102497937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146161, intron 1 of 8)	intron (NM_146161, intron 1 of 8)	16046.0	NM_029270	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108919035-4	chr12	108918545	108919545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	24773.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115486270-2	chr5	115485770	115486770	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1786.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	10.0	4.0	2.0	2.0	4.5	1.0
Merged-chr1-186855729-3	chr1	186855215	186856215	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106357.0	NM_026041	67223.0	Mm.289841	NM_026041	ENSMUSG00000001305	Rrp15	2810430M08Rik|5430437H21Rik	ribosomal RNA processing 15 homolog (S. cerevisiae)	protein-coding	10.5	21.5	24.0	10.5	0.0	2.0
Merged-chr6-129436237-4	chr6	129435750	129436750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175526, intron 2 of 5)	intron (NM_175526, intron 2 of 5)	15750.0	NM_001347475	243653.0	Mm.131289	NM_175526	ENSMUSG00000033082	Clec1a	5930406N14Rik	C-type lectin domain family 1, member a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-78236547-2	chr16	78236047	78237047	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	18907.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65581760-2	chr18	65581260	65582260	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361053)	promoter-TSS (NM_001361053)	-658.0	NM_001361053	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111063037-4	chr9	111062543	111063543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5525.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	4.5	1.5	3.5	9.0	6.5	7.0
Merged-chr4-95053367-4	chr4	95052878	95053878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1156.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	65.0	238.5	133.5	90.0	174.0	142.5
Merged-chr16-92398912-4	chr16	92398375	92399375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	1203.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-28781196-4	chr3	28780681	28781681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177586)	promoter-TSS (NM_177586)	-96.0	NM_177586	208691.0	Mm.193670	NM_177586	ENSMUSG00000050192	Eif5a2	9630038B20|eIF5AII	eukaryotic translation initiation factor 5A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125165686-4	chr6	125165164	125166164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008084, exon 1 of 7)	5' UTR (NM_008084, exon 1 of 7)	109.0	NM_008084	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	68.5	309.5	180.5	93.0	227.0	182.5
Merged-chr7-139390048-2	chr7	139389548	139390548	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183144, intron 1 of 15)	intron (NM_183144, intron 1 of 15)	939.0	NM_001127363	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0.0	5.5	2.5	3.0	8.5	5.0
Merged-chr4-34687329-4	chr4	34686833	34687833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011895, exon 1 of 8)	5' UTR (NM_011895, exon 1 of 8)	105.0	NM_011895	24060.0	Mm.281885	NM_011895	ENSMUSG00000028293	Slc35a1	AA408150|AI314851	solute carrier family 35 (CMP-sialic acid transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-105589511-4	chr11	105589031	105590031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181071)	promoter-TSS (NM_181071)	-455.0	NM_181071	77097.0	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35979833-4	chr2	35979335	35980335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029774)	promoter-TSS (NM_029774)	-211.0	NM_029774	74410.0	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119310195-4	chr13	119309702	119310702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98809.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-72844422-4	chr12	72843934	72844934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73331.0	NM_029444	75801.0	Mm.242892	NM_029444	ENSMUSG00000021098	4930447C04Rik	4921504I02Rik|A930035O15Rik|Six6OS|Six6as|Six6os1	RIKEN cDNA 4930447C04 gene	protein-coding	35.0	91.0	41.5	27.0	77.0	48.0
Merged-chr2-166079958-2	chr2	166079458	166080458	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252579, intron 15 of 20)	intron (NM_001252579, intron 15 of 20)	75327.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19628738-4	chr7	19628252	19629252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290457, intron 1 of 10)	intron (NM_001290457, intron 1 of 10)	686.0	NM_001290457	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141525467-4	chr7	141524961	141525961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026522, intron 7 of 10)	intron (NM_026522, intron 7 of 10)	14396.0	NM_026522	68038.0	Mm.245355	NM_026522	ENSMUSG00000025512	Chid1	3110023E09Rik|AI841869	chitinase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20746356-4	chr18	20745857	20746857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019737)	promoter-TSS (NM_019737)	47.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164941234-4	chr2	164940719	164941719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-7000.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61267251-4	chr11	61266719	61267719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007437)	promoter-TSS (NM_007437)	-33.0	NM_007437	11671.0	Mm.398221	NM_007437	ENSMUSG00000010025	Aldh3a2	AI194803|Ahd-3|Ahd-3r|Ahd3|Ahd3-r|Aldh4|Aldh4-r|FALDH	aldehyde dehydrogenase family 3, subfamily A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34148680-4	chr19	34148190	34149190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024204, intron 2 of 5)	intron (NM_024204, intron 2 of 5)	17351.0	NM_024204	52024.0	Mm.183030	NM_024204	ENSMUSG00000024774	Ankrd22	5430429D21Rik|D19Ertd675e	ankyrin repeat domain 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57275224-4	chr17	57274754	57275754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3846.0	NM_001163816	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	46.5	112.5	85.5	31.5	77.5	105.0
Merged-chr6-29245945-4	chr6	29245444	29246444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26544.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58076302-1	chr15	58075802	58076802	+	1000.0	f0_c57.idr	5' UTR (NM_001042438, exon 1 of 5)	5' UTR (NM_001042438, exon 1 of 5)	206.0	NM_001042438	22770.0	Mm.244931	NM_009572	ENSMUSG00000022361	Zhx1	-	zinc fingers and homeoboxes 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39511989-4	chr1	39511471	39512471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER92D|LTR|ERV1	-23730.0	NM_028043	52846.0	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47778537-4	chr6	47778019	47779019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	25133.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	9.0	28.0	31.0	6.0	21.0	13.0
Merged-chr6-86579463-4	chr6	86578965	86579965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48709.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-68060111-2	chr18	68059611	68060611	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	(TTA)n|Simple_repeat|Simple_repeat	126938.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.5	0.0	0.0	0.5	0.0	0.0
Merged-chr5-113910227-4	chr5	113909721	113910721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1515.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	13.5	17.0	13.0	17.5	11.0	26.0
Merged-chr10-80509742-4	chr10	80509249	80510249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139226, intron 1 of 1)	intron (NM_139226, intron 1 of 1)	14843.0	NM_139226	246086.0	Mm.250572	NM_139226	ENSMUSG00000045518	Onecut3	OC-3|Oc3	one cut domain, family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35164988-4	chr17	35164475	35165475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020027)	promoter-TSS (NM_020027)	-98.0	NM_020027	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38403845-4	chr16	38403333	38404333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134102, intron 8 of 10)	intron (NM_134102, intron 8 of 10)	29312.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-26600850-4	chr11	26600356	26601356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6936.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	18.5	36.0	34.5	15.0	36.5	20.0
Merged-chr6-28928191-2	chr6	28927691	28928691	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEz-int|LTR|ERVK	-94428.0	NR_029567	387237.0		NR_029567	ENSMUSG00000065469	Mir129-1	Mirn129-1|Mirn129b|miR-129b|mir-129-1	microRNA 129-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132710694-4	chr2	132710176	132711176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028637, intron 2 of 2)	intron (NM_028637, intron 2 of 2)	20078.0	NM_028637	73747.0	Mm.284114	NM_028637	ENSMUSG00000044991	1110034G24Rik	-	RIKEN cDNA 1110034G24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55876676-4	chr19	55876192	55877192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-18629.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62641054-4	chr4	62640438	62641438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019492, intron 17 of 19)	intron (NM_019492, intron 17 of 19)	21266.0	NM_134257	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120291797-4	chr2	120291297	120292297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2728.0	NM_001024137	78390.0	Mm.330507	NM_001024137	ENSMUSG00000070719	Pla2g4d	2610311B01Rik|Pla2delta|cPLA2delta	phospholipase A2, group IVD	protein-coding	18.0	15.5	26.5	21.0	42.0	15.5
Merged-chr11-120169469-2	chr11	120168969	120169969	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18118.0	NM_001164798	72055.0	Mm.253403	NM_024249	ENSMUSG00000061306	Slc38a10	1810073N04Rik	solute carrier family 38, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109480043-4	chr11	109479556	109480556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028710, intron 1 of 13)	intron (NM_028710, intron 1 of 13)	-5836.0	NM_001361975	74008.0	Mm.482224	NM_028710	ENSMUSG00000020604	Arsg	6330406P08Rik|AI846872|ASG	arylsulfatase G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134639472-4	chr5	134638994	134639994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001312867)	promoter-TSS (NM_001312867)	-85.0	NM_033561	22384.0	Mm.27955	NM_033561	ENSMUSG00000040731	Eif4h	AU018978|D5Ertd355e|E430026L18Rik|Ef4h|Wbscr1|Wscr1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43674428-2	chr19	43673928	43674928	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045645)	promoter-TSS (NR_045645)	453.0	NM_145156	246696.0	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75363933-2	chr18	75363433	75364433	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_155535, exon 6 of 7)	non-coding (NR_155535, exon 6 of 7)	3155.0	NR_155535	102636262.0	Mm.421168	NR_155535		Gm20544	-	predicted gene 20544	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70789479-4	chr11	70788972	70789972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23089.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29437409-4	chr17	29436906	29437906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-53639.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	29.0	105.0	58.0	33.0	82.0	37.5
Merged-chr14-30826732-4	chr14	30826241	30827241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028839, intron 1 of 7)	intron (NM_028839, intron 1 of 7)	1147.0	NM_028839	69179.0	Mm.143025	NM_028839	ENSMUSG00000006526	Tmem110	1810038N08Rik|2310014H19Rik|AW554125|STIMATE	transmembrane protein 110	protein-coding	13.5	43.0	53.0	8.5	55.0	27.5
Merged-chr4-98436988-4	chr4	98436494	98437494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005784, intron 11 of 19)	intron (NM_001005784, intron 11 of 19)	25967.0	NM_001355177	12695.0	Mm.90218	NM_007704	ENSMUSG00000061859	Patj	Cipp|Inadl	PATJ, crumbs cell polarity complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11476956-4	chr8	11476452	11477452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126558)	promoter-TSS (NR_126558)	-977.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29067203-4	chr19	29066690	29067690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045687)	promoter-TSS (NR_045687)	-111.0	NR_045687	100503337.0	Mm.103412	NR_045687		Gm9895	-	predicted gene 9895	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59611960-4	chr2	59611447	59612447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198294)	promoter-TSS (NM_198294)	-95.0	NM_198294	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-16637877-4	chr11	16637366	16638366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114337.0	NM_207655	13649.0	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-6765075-4	chr18	6764592	6765592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001278447)	promoter-TSS (NM_001278447)	-75.0	NM_181070	19330.0	Mm.132802	NM_181070	ENSMUSG00000073639	Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding	9.5	37.0	17.5	7.5	30.0	22.5
Merged-chr4-63424248-4	chr4	63423743	63424743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008792, intron 7 of 11)	intron (NM_001008792, intron 7 of 11)	-20798.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84582755-4	chr3	84582238	84583238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081093)	promoter-TSS (NM_001081093)	-113.0	NM_001081093	99889.0	Mm.316536	NM_001081093	ENSMUSG00000074513	Arfip1	2310030I10Rik|Arfaptin|D3Ertd598e	ADP-ribosylation factor interacting protein 1	protein-coding	21.5	32.5	31.0	3.0	31.5	26.5
Merged-chr9-104972997-4	chr9	104972483	104973483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028719, intron 7 of 15)	intron (NM_028719, intron 7 of 15)	-80285.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	11.0	10.5	5.0	15.0	26.5	26.0
Merged-chr5-113647379-4	chr5	113646882	113647882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	3008.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	27.5	72.5	43.5	39.0	43.0	48.0
Merged-chr12-40038068-4	chr12	40037541	40038541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007487)	promoter-TSS (NM_007487)	-54.0	NM_001039515	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134128770-4	chr4	134128290	134129290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080559)	promoter-TSS (NM_080559)	-37.0	NM_080559	73723.0	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	47.0	87.5	42.5	22.5	34.0	50.0
Merged-chr5-72763098-4	chr5	72762527	72763527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 14 of 17)	intron (NM_013689, intron 14 of 17)	-10250.0	NM_001122754	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73064200-4	chr2	73063696	73064696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83750.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32686067-4	chr9	32685560	32686560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9982.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	3.0	0.0	3.5	1.5	0.0	1.0
Merged-chr15-53644233-4	chr15	53643723	53644723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177225, intron 4 of 4)	B3A|SINE|B2	-29944.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61370643-4	chr9	61370139	61371139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1727.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136809305-4	chr6	136808798	136809798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177688, exon 1 of 1)	3' UTR (NM_177688, exon 1 of 1)	1050.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	299.5	570.5	464.5	288.5	613.0	474.5
Merged-chr7-45395818-4	chr7	45395314	45396314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009224)	promoter-TSS (NM_009224)	-72.0	NR_126538	20637.0	Mm.216386	NM_009224	ENSMUSG00000063511	Snrnp70	2700022N21Rik|3200002N22Rik|AI325098|R74807|Rnu1p70|Rnulp70|Snrp70|Srnp70|U1-70|U1-70K	small nuclear ribonucleoprotein 70 (U1)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55052684-4	chr1	55052184	55053184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026424)	promoter-TSS (NM_026424)	-86.0	NM_026424	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	81.0	186.0	152.0	94.5	173.5	122.0
Merged-chr3-20027523-4	chr3	20027023	20028023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 4 of 16)	intron (NM_080634, intron 4 of 16)	7787.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-66473190-4	chr18	66472687	66473687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14583.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	1.5	0.0	4.0	1.0	0.0	3.5
Merged-chr18-68160760-7	chr18	68160260	68161260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-67186.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	8.0	16.5	12.0	11.5	12.5	12.0
Merged-chr3-115682979-4	chr3	115682481	115683481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32074.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	4.0	1.5	17.5	4.0	1.5	17.5
Merged-chr13-44937917-4	chr13	44937410	44938410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025772, intron 7 of 9)	RMER17C2|LTR|ERVK	64186.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158174685-4	chr2	158174204	158175204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17304.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-8239704-4	chr8	8239195	8240195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	421078.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127603860-4	chr10	127603292	127604292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	17356.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	11.5	53.5	46.5	13.0	82.5	54.5
Merged-chr5-63832293-2	chr5	63831793	63832793	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	19798.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-98013444-4	chr3	98012921	98013921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010928)	promoter-TSS (NM_010928)	-117.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57765615-4	chr6	57765113	57766113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 3 of 4)	intron (NM_146168, intron 3 of 4)	59512.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77376178-2	chr11	77375678	77376678	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291190, intron 1 of 13)	intron (NM_001291190, intron 1 of 13)	27898.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-88894225-4	chr18	88893741	88894741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018821)	promoter-TSS (NM_018821)	-34.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117066518-2	chr8	117066018	117067018	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 6 of 42)	intron (NM_029686, intron 6 of 42)	15931.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84967583-4	chr2	84967071	84968071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12890.0	NM_008920	19074.0	Mm.142727	NM_008920	ENSMUSG00000027073	Prg2	EMBP|MBP|mMBP|mMBP-1	proteoglycan 2, bone marrow	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-97593243-4	chr16	97592748	97593748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015775, intron 3 of 13)	B3|SINE|B2	17947.0	NM_015775	50528.0	Mm.276145	NM_015775	ENSMUSG00000000385	Tmprss2	D16Ertd61e	transmembrane protease, serine 2	protein-coding	1.0	6.0	1.0	1.0	0.0	3.5
Merged-chr6-125329321-2	chr6	125328821	125329821	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011324, intron 1 of 11)	B3|SINE|B2	7981.0	NM_011324	20276.0	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8747957-4	chr10	8747458	8748458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 10 of 19)	intron (NM_175155, intron 10 of 19)	138112.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	16.5	26.0	9.5	1.5	24.0	11.5
Merged-chr12-111413521-4	chr12	111413028	111414028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3902.0	NM_001289487	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74368470-4	chr1	74367965	74368965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033345, exon 10 of 10)	exon (NM_001033345, exon 10 of 10)	6357.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24687931-4	chr5	24687426	24688426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305264, intron 1 of 14)	intron (NM_001305264, intron 1 of 14)	2111.0	NM_001305264	53312.0	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70787202-4	chr11	70786705	70787705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT-int|LTR|ERVL-MaLR	22758.0	NM_177565	193043.0	Mm.40966	NM_177565	ENSMUSG00000043602	Zfp3	AI854635|B230309J24|Fnp-1|Zfp-3	zinc finger protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80832401-4	chr12	80831916	80832916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178682, intron 2 of 5)	intron (NM_178682, intron 2 of 5)	41884.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40524242-2	chr10	40523742	40524742	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-46120.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134416872-4	chr1	134416387	134417387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001306069, intron 1 of 7)	intron (NM_001306069, intron 1 of 7)	1223.0	NM_001306069	72674.0	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19327322-4	chr7	19326809	19327809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17264.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29660603-4	chr17	29660093	29661093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028791)	promoter-TSS (NM_028791)	-2.0	NM_028791	74157.0	Mm.390979	NM_028791	ENSMUSG00000024019	Cmtr1	1300018I05Rik|AI451264|Ftsjd2|MTr1	cap methyltransferase 1	protein-coding	72.0	123.5	137.0	49.0	132.0	127.5
Merged-chr10-77530289-4	chr10	77529784	77530784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008404)	promoter-TSS (NM_008404)	-64.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-107603702-2	chr7	107603202	107604202	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008905, intron 1 of 24)	intron (NM_008905, intron 1 of 24)	-3142.0	NM_001163557	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5936444-4	chr17	5935952	5936952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-4828.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31530557-1	chr15	31530057	31531057	+	1000.0	f0_balb.idr	intron (NM_172606, intron 1 of 25)	CpG	480.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81545317-4	chr10	81544832	81545832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010301)	promoter-TSS (NM_010301)	-286.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37299824-4	chr1	37299351	37300351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290797)	promoter-TSS (NM_001290797)	13.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45573904-4	chr17	45573418	45574418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008302)	promoter-TSS (NM_008302)	-657.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155098128-4	chr1	155097635	155098635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010500, exon 1 of 1)	3' UTR (NM_010500, exon 1 of 1)	1501.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-140790561-4	chr2	140790065	140791065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 3 of 18)	intron (NM_001013802, intron 3 of 18)	-119089.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120011263-4	chr9	120010768	120011768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	12330.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	5.0	8.5	7.0	2.0	8.0	4.5
Merged-chr1-82761776-6	chr1	82761290	82762290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025453, intron 2 of 3)	intron (NM_025453, intron 2 of 3)	6666.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53312146-4	chr18	53311641	53312641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	ORR1D2|LTR|ERVL-MaLR	66479.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120356528-2	chr11	120356028	120357028	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5006.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152021043-4	chr1	152020542	152021542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 1 of 5)	MTD|LTR|ERVL-MaLR	69278.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170322257-4	chr2	170321740	170322740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34121.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24618567-2	chr7	24618067	24619067	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001102613, intron 5 of 14)	B1_Mus1|SINE|Alu	7239.0	NM_001102613	232970.0	Mm.333663	NM_001102613	ENSMUSG00000074277	Phldb3	EG232970|Gm10102	pleckstrin homology like domain, family B, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57547444-4	chr16	57546908	57547908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-1834.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-179842769-4	chr1	179842257	179843257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38742.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11454579-2	chr8	11454079	11455079	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-23350.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141735103-4	chr4	141734603	141735603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11572.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	8.5	32.5	15.0	14.5	20.0	13.0
Merged-chr16-58727926-4	chr16	58727417	58728417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_171826)	promoter-TSS (NM_171826)	7.0	NM_001252451	224250.0	Mm.29482	NM_171826	ENSMUSG00000022744	Cldnd1	1110019C08Rik|AA407103|AI849195|AW489850|Cldn25	claudin domain containing 1	protein-coding	11.5	24.5	14.0	9.0	17.5	15.5
Merged-chr6-98113901-4	chr6	98113406	98114406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122123.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83078227-4	chr11	83077743	83078743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13131.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34280779-4	chr10	34280293	34281293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1397.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107339581-4	chr11	107339104	107340104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	131116.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117969236-4	chr11	117968726	117969726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007707, exon 1 of 2)	5' UTR (NM_007707, exon 1 of 2)	140.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37537506-3	chr13	37537013	37538013	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	192168.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	30.0	133.0	79.5	4.0	2.5	5.5
Merged-chr11-53805966-4	chr11	53805472	53806472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	35499.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-7088911-4	chr1	7088428	7089428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183028)	promoter-TSS (NM_183028)	8.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58802522-4	chr1	58802013	58803013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080126)	promoter-TSS (NM_001080126)	11.0	NM_001277926	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	47.0	76.0	58.0	26.5	83.0	75.0
Merged-chr1-24469699-4	chr1	24469159	24470159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007733, intron 11 of 50)	intron (NM_007733, intron 11 of 50)	117778.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	0.0	3.0	1.5	0.0	3.0	1.5
Merged-chr10-43752215-4	chr10	43751722	43752722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040581, intron 1 of 3)	intron (NR_040581, intron 1 of 3)	6064.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29032588-4	chr17	29032104	29033104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013663)	promoter-TSS (NM_013663)	-56.0	NM_013663	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113777060-4	chr5	113776583	113777583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025526, intron 4 of 4)	intron (NM_025526, intron 4 of 4)	4271.0	NM_025526	66383.0	Mm.29497	NM_025526	ENSMUSG00000025825	Iscu	2310020H20Rik|AA407971|Nifu|Nifun	iron-sulfur cluster assembly enzyme	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79626887-4	chr12	79626383	79627383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	297850.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-105033358-4	chr12	105032838	105033838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028419, intron 1 of 1)	intron (NM_028419, intron 1 of 1)	720.0	NM_028419	73046.0	Mm.29128	NM_028419	ENSMUSG00000021102	Glrx5	-	glutaredoxin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-73314076-4	chr8	73313564	73314564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010687, intron 1 of 14)	intron (NM_010687, intron 1 of 14)	39476.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114765350-4	chr11	114764837	114765837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102615)	promoter-TSS (NM_001102615)	-52.0	NM_001102615	286942.0	Mm.308713	NM_001102615	ENSMUSG00000010021	Kif19a	Kif19	kinesin family member 19A	protein-coding	1.5	2.0	3.0	0.0	0.0	0.0
Merged-chr5-43872050-4	chr5	43871554	43872554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	ORR1B2|LTR|ERVL-MaLR	3245.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	54.0	152.5	143.5	67.0	193.5	146.5
Merged-chr16-44199214-4	chr16	44198708	44199708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029889, intron 3 of 7)	intron (NM_001029889, intron 3 of 7)	25811.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120574370-2	chr11	120573870	120574870	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1117.0	NM_011032	18453.0	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	30.5	34.0	14.5	30.5	37.5	14.5
Merged-chr5-148741853-3	chr5	148741322	148742322	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028285)	promoter-TSS (NR_028285)	-18.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165287787-4	chr2	165287266	165288266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252574)	promoter-TSS (NM_001252574)	21.0	NM_001252574	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	18.0	35.5	10.0	34.0	37.5	28.0
Merged-chr4-132345729-4	chr4	132345257	132346257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001197082)	promoter-TSS (NM_001197082)	-7.0	NM_133878	100088.0	Mm.255045	NM_133878	ENSMUSG00000028896	Rcc1	4931417M11Rik|AI326872|Chc1	regulator of chromosome condensation 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31390009-4	chr14	31389526	31390526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	27651.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-108934320-4	chr7	108933825	108934825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025344)	promoter-TSS (NM_025344)	-90.0	NM_025344	66085.0	Mm.182962	NM_025344	ENSMUSG00000031029	Eif3f	0610037M02Rik|AA409853|Eif3s5	eukaryotic translation initiation factor 3, subunit F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21716786-4	chr16	21716289	21717289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-22124.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-126940682-4	chr6	126940181	126941181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138594, intron 1 of 13)	Lx8|LINE|L1	715.0	NM_138594	28040.0	Mm.44228	NM_138594	ENSMUSG00000030347	D6Wsu163e	C12orf4	DNA segment, Chr 6, Wayne State University 163, expressed	protein-coding	1.5	2.5	5.5	4.5	2.0	3.0
Merged-chr3-41565617-4	chr3	41565116	41566116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130186, intron 1 of 10)	CpG	736.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-30676581-4	chr10	30676085	30677085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 9 of 14)	intron (NM_001358842, intron 9 of 14)	-20718.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30547645-2	chr2	30547145	30548145	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47399.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141123158-4	chr7	141122659	141123659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5353.0	NM_178381	71345.0	Mm.235813	NM_178381	ENSMUSG00000054662	Ano9	5430425C04Rik|Tmem16j|Tp53i5|Trp53i5	anoctamin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131068376-4	chr1	131067873	131068873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	MTC|LTR|ERVL-MaLR	29470.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-55918496-4	chr7	55918017	55919017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 23 of 30)	intron (NM_011370, intron 23 of 30)	43976.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	205.0	523.0	367.0	108.0	262.5	189.5
Merged-chr14-104522671-4	chr14	104522157	104523157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026047)	promoter-TSS (NM_026047)	9.0	NM_026047	72486.0	Mm.291811	NM_026047	ENSMUSG00000022120	Rnf219	2610206B13Rik|2810449K13Rik|AI451544	ring finger protein 219	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153350922-6	chr2	153350394	153351394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039939, intron 1 of 11)	intron (NM_001039939, intron 1 of 11)	4755.0	NM_001039939	228790.0	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182283455-4	chr1	182282968	182283968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007853)	promoter-TSS (NM_007853)	-667.0	NM_007853	13244.0	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86202863-4	chr15	86202363	86203363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11596.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54695794-4	chr12	54695278	54696278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001331162, exon 1 of 5)	exon (NM_001331162, exon 1 of 5)	116.0	NM_001331162	66266.0	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding	160.5	368.0	264.0	127.5	351.0	234.0
Merged-chr16-91433698-4	chr16	91433210	91434210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27475.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172309861-4	chr1	172309362	172310362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2505.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	14.0	10.0	17.0	8.0	21.5	8.0
Merged-chr9-7863130-2	chr9	7862630	7863630	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007464, intron 1 of 8)	RLTR30B_MM|LTR|ERV1	10040.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121297841-8	chr9	121297319	121298319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152160, exon 1 of 18)	non-coding (NR_152160, exon 1 of 18)	317.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	132.5	248.0	197.0	63.5	96.5	77.0
Merged-chr17-34032307-4	chr17	34031810	34032810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205216)	promoter-TSS (NM_001205216)	-40.0	NM_001205216	20182.0	Mm.1243	NM_011306	ENSMUSG00000039656	Rxrb	AL023085|H-2RIIBP|Nr2b2|RCoR-1|Rub	retinoid X receptor beta	protein-coding	58.0	183.5	115.5	63.5	180.5	110.5
Merged-chr9-57910997-4	chr9	57910532	57911532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122873)	promoter-TSS (NM_001122873)	46.0	NM_001122873	69459.0	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25486464-4	chr9	25485964	25486964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	4867.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90269538-2	chr9	90269052	90270052	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	1217.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	48.0	101.0	106.5	28.0	91.5	81.0
Merged-chr3-96601037-4	chr3	96600550	96601550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163170)	promoter-TSS (NM_001163170)	-83.0	NM_001163170	280411.0	Mm.482147	NM_001163170	ENSMUSG00000049288	Lix1l	D130027M04Rik	Lix1-like	protein-coding	0.5	0.0	7.5	0.0	0.0	0.0
Merged-chr2-59187564-4	chr2	59187065	59188065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	MIRb|SINE|MIR	26715.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34862256-2	chr18	34861756	34862756	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007913, intron 1 of 1)	intron (NM_007913, intron 1 of 1)	1049.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7019461-4	chr19	7018968	7019968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153795)	promoter-TSS (NM_153795)	1.0	NM_153795	108101.0	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13161442-2	chr8	13160942	13161942	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010684, intron 1 of 8)	intron (NM_010684, intron 1 of 8)	2281.0	NM_010684	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64452925-4	chr9	64452420	64453420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134399, intron 1 of 24)	intron (NM_001134399, intron 1 of 24)	67294.0	NM_001134399	214058.0	Mm.127721	NM_172522	ENSMUSG00000036466	Megf11	2410080H04Rik|D130061K05	multiple EGF-like-domains 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118666250-4	chr9	118665747	118666747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 8 of 27)	intron (NM_133721, intron 8 of 27)	-45445.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59481318-4	chr15	59480825	59481825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	107127.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	0.0	5.0	6.5	3.0	7.0	7.0
Merged-chr8-88300436-4	chr8	88299930	88300930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037724, intron 3 of 27)	intron (NM_001037724, intron 3 of 27)	6226.0	NM_001037724	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	28.5	94.0	54.5	23.0	60.0	66.5
Merged-chr12-111443740-3	chr12	111443280	111444280	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009396, intron 1 of 11)	intron (NM_009396, intron 1 of 11)	1119.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38090543-2	chr16	38089996	38090996	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019827, exon 1 of 11)	5' UTR (NM_019827, exon 1 of 11)	-1236.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	48.5	38.5	69.0	26.0	31.0	32.5
Merged-chr6-17625202-2	chr6	17624713	17625713	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-11797.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	10.0	11.5	6.5	1.5	5.0	2.0
Merged-chr6-142345738-6	chr6	142345228	142346228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183165)	promoter-TSS (NM_183165)	31.0	NM_183165	232491.0	Mm.490474	NM_183165	ENSMUSG00000041671	Pyroxd1	-	pyridine nucleotide-disulphide oxidoreductase domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-119848259-4	chr6	119847754	119848754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053204)	promoter-TSS (NM_053204)	61.0	NR_030776	67289.0	Mm.418299	NR_030776		3110021A11Rik	-	RIKEN cDNA 3110021A11 gene	ncRNA	16.0	51.5	27.5	8.0	13.5	12.0
Merged-chr2-150842338-4	chr2	150841821	150842821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 5 of 12)	intron (NR_151505, intron 5 of 12)	249.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-48546658-4	chr13	48546145	48547145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-8373.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-100800650-4	chr6	100800134	100801134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198612, intron 6 of 6)	intron (NM_198612, intron 6 of 6)	-33004.0	NM_182939	232314.0	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding	0.5	0.0	4.0	0.0	0.0	0.0
Merged-chr2-30364114-4	chr2	30363597	30364597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175392)	promoter-TSS (NM_175392)	-136.0	NM_001242407	108958.0	Mm.254974	NM_175392	ENSMUSG00000026858	Miga2	5730472N09Rik|AA408683|AI790341|C9orf54|Fam73b|R74766	mitoguardin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66388319-4	chr7	66387834	66388834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146191)	promoter-TSS (NM_146191)	7.0	NM_146191	233328.0	Mm.33284	NM_146191	ENSMUSG00000015133	Lrrk1	AW319595|C230002E15Rik|D130026O16Rik|mKIAA1790	leucine-rich repeat kinase 1	protein-coding	87.5	390.0	342.0	147.0	374.0	242.5
Merged-chr8-84986056-6	chr8	84985540	84986540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4555.0	NM_133255	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	207.0	448.0	349.5	174.5	507.0	358.5
Merged-chr11-70595826-4	chr11	70595315	70596315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 1 of 30)	intron (NM_016713, intron 1 of 30)	-20079.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75486696-4	chr11	75486213	75487213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138659)	promoter-TSS (NM_138659)	-64.0	NM_138659	192159.0	Mm.3757	NM_138659	ENSMUSG00000020850	Prpf8	AU019467|D11Bwg0410e|DBF3/PRP8|Prp8|Sfprp8l	pre-mRNA processing factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-55721502-4	chr17	55721026	55722026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8890.0	NR_151542	72836.0	Mm.177073	NM_028370	ENSMUSG00000024174	Pot1b	2810458H16Rik	protection of telomeres 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-106691956-4	chr13	106691449	106692449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2c|LINE|L1	245009.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	0.0	6.0	7.0	0.0	1.0	3.5
Merged-chr16-36714363-4	chr16	36713889	36714889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 3 of 7)	RLTR28|LTR|ERVL	20411.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75452738-2	chr11	75452238	75453238	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_138950, exon 1 of 10)	exon (NM_138950, exon 1 of 10)	1979.0	NM_138950	192652.0	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-53595730-2	chr10	53595230	53596230	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027830, intron 8 of 13)	intron (NM_027830, intron 8 of 13)	-1231.0	NM_025541	66403.0	Mm.272989	NM_025541	ENSMUSG00000019857	Asf1a	2310079C17Rik|C79052	anti-silencing function 1A histone chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-9857764-4	chr1	9857279	9858279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037759, intron 1 of 16)	RMER13B|LTR|ERVK	9498.0	NM_001037759	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21798678-4	chr9	21798182	21799182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145611)	promoter-TSS (NM_145611)	-136.0	NM_145611	235041.0	Mm.257371	NM_145611	ENSMUSG00000032194	Kank2	AI504612|Ankrd25|BC010245	KN motif and ankyrin repeat domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61105785-4	chr18	61105303	61106303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001037859, exon 2 of 22)	5' UTR (NM_001037859, exon 2 of 22)	231.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88138924-4	chr3	88138402	88139402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3470.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46450990-4	chr4	46450489	46451489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130889)	promoter-TSS (NM_130889)	63.0	NM_130889	67628.0	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85027221-2	chr8	85026721	85027721	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026760, exon 1 of 3)	exon (NM_026760, exon 1 of 3)	388.0	NM_026760	68544.0	Mm.196005	NM_026760	ENSMUSG00000041203	Trir	1110002H14Rik|2310036O22Rik|AI854688	telomerase RNA component interacting RNase	protein-coding	29.0	114.5	45.0	47.0	62.0	60.0
Merged-chr15-79742568-4	chr15	79742046	79743046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205345)	promoter-TSS (NM_001205345)	-10.0	NM_001205345	223697.0	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-26456563-4	chr12	26456081	26457081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021384)	promoter-TSS (NM_021384)	-129.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	57.0	283.0	162.5	105.5	227.0	166.5
Merged-chr3-152402510-4	chr3	152401998	152402998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287139, intron 1 of 13)	intron (NM_001287139, intron 1 of 13)	5814.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-83828157-1	chr18	83827657	83828657	+	1000.0	f0_balb.idr	Intergenic	Intergenic	258405.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18392812-4	chr2	18392269	18393269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007869)	promoter-TSS (NM_007869)	61.0	NM_001190817	13418.0	Mm.246674	NM_007869	ENSMUSG00000026740	Dnajc1	4733401K02Rik|AA960110|D230036H06Rik|Dnajl1|ERdj1|ERj1p|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57549229-4	chr16	57548736	57549736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177871)	promoter-TSS (NM_001177871)	-6.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29171231-4	chr7	29170726	29171726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_182694, exon 2 of 3)	exon (NM_182694, exon 2 of 3)	1016.0	NM_182694	243897.0	Mm.389886	NM_182694	ENSMUSG00000031493	Ggn	AI593290	gametogenetin	protein-coding	10.0	20.0	23.5	0.0	6.0	4.0
Merged-chr1-180428020-5	chr1	180427569	180428569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55435.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89861327-4	chr3	89860832	89861832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29962.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-87147583-4	chr12	87147080	87148080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010363)	promoter-TSS (NM_010363)	-127.0	NM_001252556	14874.0	Mm.29652	NM_010363	ENSMUSG00000021033	Gstz1	MAAI	glutathione transferase zeta 1 (maleylacetoacetate isomerase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25673469-2	chr7	25672969	25673969	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001290497, exon 2 of 4)	exon (NM_001290497, exon 2 of 4)	1697.0	NM_001290497	320208.0	Mm.207484	NM_177102	ENSMUSG00000061702	Tmem91	A830041P22Rik|DSPC3|SynDIG3	transmembrane protein 91	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55555377-4	chr16	55554861	55555861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60630.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28622493-4	chr17	28622007	28623007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016795)	promoter-TSS (NM_016795)	14.0	NM_016795	20815.0	Mm.15252	NM_016795	ENSMUSG00000004865	Srpk1	AU017960	serine/arginine-rich protein specific kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75045334-4	chr14	75044845	75045845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198642, intron 9 of 13)	intron (NM_198642, intron 9 of 13)	29318.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30717078-2	chr2	30716578	30717578	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4132.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127736343-2	chr10	127735843	127736843	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3195.0	NM_198035	320080.0	Mm.27258	NM_198035	ENSMUSG00000044617	Zbtb39	7030401O21Rik|mKIAA0352	zinc finger and BTB domain containing 39	protein-coding	12.5	34.5	33.5	7.0	30.5	17.5
Merged-chr4-44012605-4	chr4	44012110	44013110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290470)	promoter-TSS (NM_001290470)	-33.0	NM_016760	12757.0	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-16964113-4	chr6	16963635	16964635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65694.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172503529-2	chr1	172503029	172504029	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178598, intron 1 of 4)	intron (NM_178598, intron 1 of 4)	3283.0	NM_178598	21346.0	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	5.5	11.5	9.0	1.5	0.5	4.0
Merged-chr8-94340995-4	chr8	94340501	94341501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019415, intron 11 of 24)	intron (NM_019415, intron 11 of 24)	11793.0	NM_001205311	20497.0	Mm.25804	NM_019415	ENSMUSG00000031766	Slc12a3	AI035291|NCC|NCCT|TSC	solute carrier family 12, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29548213-4	chr11	29547697	29548697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024277)	promoter-TSS (NM_024277)	-157.0	NM_001033865	78294.0	Mm.180003	NM_024277	ENSMUSG00000020460	Rps27a	0610006J14Rik|Uba52|Ubb|Ubc	ribosomal protein S27A	protein-coding	3.0	32.0	33.5	25.5	38.5	27.0
Merged-chr5-136568972-4	chr5	136568463	136569463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-11653	-1473.0	NM_001291238	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	4.0	0.5	2.5	4.0	2.0	2.0
Merged-chr1-167308639-4	chr1	167308098	167309098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039483)	promoter-TSS (NM_001039483)	-72.0	NM_001039483	68944.0	Mm.330045	NM_026881	ENSMUSG00000052428	Tmco1	1190006A08Rik|4930403O06Rik|AA109065|AU022572|ESTM39	transmembrane and coiled-coil domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-82829937-4	chr9	82829473	82830473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_022986, exon 1 of 4)	5' UTR (NM_022986, exon 1 of 4)	167.0	NM_001168240	65099.0	Mm.41415	NM_022986	ENSMUSG00000032251	Irak1bp1	4921528N06Rik|AI851240|Aabp3|Aip70|Simpl	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36471485-4	chr1	36470978	36471978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033570)	promoter-TSS (NM_033570)	-119.0	NM_033570	94220.0	Mm.422638	NM_033570	ENSMUSG00000037408	Cnnm4	5430430O18Rik|Acdp4	cyclin M4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39206136-4	chr6	39205598	39206598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033430, intron 1 of 19)	CpG	675.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-56315376-4	chr8	56314874	56315874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008278, intron 4 of 6)	intron (NM_008278, intron 4 of 6)	20822.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	9.0	17.5	10.5	8.5	21.5	16.0
Merged-chr12-99993700-4	chr12	99993196	99994196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	MIR|SINE|MIR	29197.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-38102672-4	chr3	38102154	38103154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105465.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-117431553-7	chr6	117431015	117432015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63720.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8983944-4	chr3	8983439	8984439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-19793.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	71.5	136.0	116.5	49.5	168.5	104.5
Merged-chr9-37208224-4	chr9	37207731	37208731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025464)	promoter-TSS (NM_025464)	8.0	NM_025464	66279.0	Mm.41451	NM_025464	ENSMUSG00000032121	Tmem218	1810021J13Rik|AV004931	transmembrane protein 218	protein-coding	14.0	25.0	19.5	9.5	37.0	26.0
Merged-chr5-3501880-4	chr5	3501374	3502374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-41959.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	47.5	27.5	7.0	17.5	35.0	19.5
Merged-chr9-72985482-4	chr9	72984993	72985993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001114328)	promoter-TSS (NM_001114328)	-11.0	NM_001286545	72278.0	Mm.268475	NM_028181	ENSMUSG00000034563	Ccpg1	1700030B06Rik|1810073J13Rik|9430028F23Rik|AI426686|AI875170|CPR8|D9Ertd392e	cell cycle progression 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-67081441-4	chr13	67080935	67081935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012449, intron 1 of 2)	intron (NM_001012449, intron 1 of 2)	110.0	NM_001012448	432769.0	Mm.458849	NM_001012325	ENSMUSG00000058883	Zfp708	Rslcan11	zinc finger protein 708	protein-coding	31.0	74.0	42.5	29.5	59.5	52.0
Merged-chr19-5488431-4	chr19	5487941	5488941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153768)	promoter-TSS (NR_153768)	-62.0	NR_153769	71711.0	Mm.27697	NM_027877	ENSMUSG00000024906	Mus81	1200008A18Rik|AI182501|AW045863	MUS81 structure-specific endonuclease subunit	protein-coding	7.0	24.5	10.0	7.0	24.0	10.0
Merged-chr4-148039691-2	chr4	148039191	148040191	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011929)	promoter-TSS (NM_011929)	614.0	NM_010840	17769.0	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	methylenetetrahydrofolate reductase	protein-coding	3.5	1.0	6.0	2.0	8.0	8.0
Merged-chr13-113617757-3	chr13	113617283	113618283	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_130796, exon 1 of 2)	exon (NM_130796, exon 1 of 2)	781.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57534557-4	chr16	57534040	57535040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-14702.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84195925-2	chr12	84195425	84196425	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	-1910.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87405745-4	chr17	87405203	87406203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029298, intron 5 of 6)	intron (NM_029298, intron 5 of 6)	22038.0	NM_029298	75467.0	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	11.0	23.0	20.5	0.0	32.0	30.5
Merged-chr9-62374967-4	chr9	62374468	62375468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 5 of 6)	intron (NM_009672, intron 5 of 6)	33625.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130728238-4	chr2	130727717	130728717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029432, intron 28 of 36)	intron (NM_029432, intron 28 of 36)	-30698.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	35.0	97.5	60.0	42.5	87.0	53.5
Merged-chr2-90579684-4	chr2	90579192	90580192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	CpG	955.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-150891680-4	chr5	150891130	150892130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60977.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27182870-4	chr3	27182347	27183347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178772)	promoter-TSS (NM_178772)	-157.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32138041-4	chr2	32137535	32138535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-13113.0	NM_172661	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20824762-4	chr14	20824256	20825256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-11906.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	4.5	39.0	17.5	4.5	37.5	17.5
Merged-chr9-55512263-4	chr9	55511765	55512765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145615)	promoter-TSS (NM_145615)	-22.0	NM_145615	110842.0	Mm.290853	NM_145615	ENSMUSG00000032314	Etfa	2010200I21Rik|D9Ertd394e	electron transferring flavoprotein, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88510024-4	chr1	88509519	88510519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008132)	promoter-TSS (NM_008132)	47.0	NM_008132	14659.0	Mm.5187	NM_008132	ENSMUSG00000062310	Glrp1	GRP-1	glutamine repeat protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21167551-4	chr13	21167026	21168026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12405.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	12.0	6.0	5.0	10.0	9.5	13.0
Merged-chr8-111151566-2	chr8	111151066	111152066	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-6068.0	NR_040364	434350.0	Mm.442061	NR_040363		9430091E24Rik	-	RIKEN cDNA 9430091E24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112325423-4	chr5	112324913	112325913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018783)	promoter-TSS (NM_018783)	-956.0	NM_018783	54723.0	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	18.5	115.5	48.5	25.0	52.5	47.5
Merged-chr14-70060539-4	chr14	70060050	70061050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028560)	TTS (NM_028560)	-16895.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-16222546-2	chr9	16222046	16223046	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	155685.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133878070-2	chr4	133877570	133878570	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009097, intron 2 of 21)	intron (NM_009097, intron 2 of 21)	-3339.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	5.5	8.0	4.0	0.0	0.0	2.0
Merged-chr15-103453704-4	chr15	103453198	103454198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153505)	promoter-TSS (NM_153505)	-127.0	NM_153505	105855.0	Mm.30805	NM_153505	ENSMUSG00000022488	Nckap1l	4930568P13Rik|AI463083|Hem1|Hemp1	NCK associated protein 1 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52921514-4	chr6	52921021	52922021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 1 of 4)	intron (NM_173406, intron 1 of 4)	-11901.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124830199-3	chr8	124829695	124830695	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_198632, exon 10 of 10)	3' UTR (NM_198632, exon 10 of 10)	32834.0	NM_025615	66523.0	Mm.436864	NM_025615	ENSMUSG00000031984	2810004N23Rik	3110004G14Rik|Ayu21-55|Gt(pU21)55Imeg|GtAyu21-55	RIKEN cDNA 2810004N23 gene	protein-coding	0.0	1.5	1.0	6.5	23.5	12.0
Merged-chr11-3131625-2	chr11	3131105	3132105	+	1000.0	f0_balb.idr|f1_balb.idr	TTS (NM_030207)	TTS (NM_030207)	7584.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180848276-4	chr1	180847789	180848789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2862.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118491964-4	chr7	118491484	118492484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033380)	promoter-TSS (NM_001033380)	-9.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	51.0	77.5	72.0	39.5	106.0	75.0
Merged-chr5-135009885-5	chr5	135009364	135010364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033794, exon 1 of 5)	non-coding (NR_033794, exon 1 of 5)	408.0	NR_033794	68758.0	Mm.389700	NM_145215	ENSMUSG00000040532	Abhd11	1110054D16Rik|A630008N09Rik|Wbscr21	abhydrolase domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-63865417-2	chr17	63864917	63865917	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 1 of 18)	intron (NM_001037997, intron 1 of 18)	1436.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86525395-4	chr1	86524895	86525895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1162.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165737652-4	chr1	165737172	165738172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26086.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31094577-4	chr3	31094071	31095071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011386)	promoter-TSS (NM_011386)	-487.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17418342-4	chr10	17417852	17418852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-304876.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-43901720-4	chr10	43901211	43902211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130892)	promoter-TSS (NM_130892)	25.0	NM_001081054	76563.0	Mm.5904	NM_001081054	ENSMUSG00000019863	Qrsl1	2700038P16Rik|C80053|GatA	glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-75037654-4	chr9	75037161	75038161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021548)	promoter-TSS (NM_021548)	47.0	NR_152135	59046.0	Mm.247837	NM_021548	ENSMUSG00000007656	Arpp19	19kDa|2700024H10Rik|ARPP-19|AW559096|Arpp12	cAMP-regulated phosphoprotein 19	protein-coding	7.5	5.0	9.5	5.0	0.5	1.0
Merged-chr17-34746807-4	chr17	34746308	34747308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2911.0	NM_009780	12268.0	Mm.477109	NM_009780	ENSMUSG00000073418	C4b	C4|Ss	complement component 4B (Chido blood group)	protein-coding	34.5	90.5	70.0	44.0	63.0	43.5
Merged-chr18-88820273-4	chr18	88819760	88820760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73947.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-14475091-4	chr10	14474608	14475608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002268, intron 2 of 24)	intron (NM_001002268, intron 2 of 24)	69928.0	NM_001002268	215798.0	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	1.0	1.0	0.0	0.0	0.0	0.0
Merged-chr15-36496797-4	chr15	36496313	36497313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175134)	promoter-TSS (NM_175134)	-22.0	NM_175134	68839.0	Mm.396537	NM_175134	ENSMUSG00000048307	Ankrd46	1110054N06Rik|AI314978|AI987733	ankyrin repeat domain 46	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64737858-4	chr1	64737346	64738346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022721)	promoter-TSS (NM_022721)	-96.0	NM_022721	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79136059-4	chr12	79135543	79136543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009705, intron 2 of 7)	intron (NM_009705, intron 2 of 7)	5255.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	8.0	30.5	26.0	7.5	30.0	26.0
Merged-chr11-6528820-4	chr11	6528319	6529319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045893)	promoter-TSS (NR_045893)	-59.0	NR_045893	100041286.0	Mm.459507	NR_045893	ENSMUSG00000085156	Snhg15	Gm11974	small nucleolar RNA host gene 15	ncRNA	36.0	118.0	98.0	38.0	146.5	96.5
Merged-chr14-63860268-4	chr14	63859746	63860746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028228)	promoter-TSS (NM_028228)	-66.0	NM_028228	72400.0	Mm.379214	NM_028228	ENSMUSG00000021958	Pinx1	2210403I16Rik|2610028A01Rik|67-11-3|AU024023|LPTS|LPTS1	PIN2/TERF1 interacting, telomerase inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-69989414-4	chr9	69988904	69989904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016787)	promoter-TSS (NM_016787)	-62.0	NM_016787	12175.0	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87515926-6	chr3	87515427	87516427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9651.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	133.5	281.0	207.0	370.0	590.5	451.0
Merged-chr10-81176605-4	chr10	81176119	81177119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007907)	promoter-TSS (NM_007907)	-12.0	NM_007907	13629.0	Mm.2903	NM_007907	ENSMUSG00000034994	Eef2	Ef-2	eukaryotic translation elongation factor 2	protein-coding	7.0	15.0	22.0	10.0	17.0	17.0
Merged-chr7-130865748-4	chr7	130865248	130866248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346515)	promoter-TSS (NM_001346515)	24.0	NM_001346515	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84715239-4	chr3	84714719	84715719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49027.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146963736-4	chr5	146963216	146964216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256101)	promoter-TSS (NM_001256101)	81.0	NM_001256101	76366.0	Mm.486234	NM_029581	ENSMUSG00000016510	Mtif3	2810012L14Rik|AI414549	mitochondrial translational initiation factor 3	protein-coding	2.5	12.5	6.0	4.0	4.0	8.0
Merged-chr12-110737898-4	chr12	110737404	110738404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027149)	promoter-TSS (NM_027149)	7.0	NM_027149	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-64851863-4	chr16	64851338	64852338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347245)	promoter-TSS (NM_001347245)	-115.0	NM_001347245	72020.0	Mm.25960	NM_028059	ENSMUSG00000047141	Zfp654	1600021C16Rik|1810008K20Rik|433036|Gm5488|Znf654	zinc finger protein 654	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-71167251-4	chr9	71166748	71167748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1528.0	NR_110517	102635087.0	Mm.444536	NR_110517	ENSMUSG00000111429	Gm32511	-	predicted gene, 32511	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134176545-7	chr5	134176068	134177068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_033572, exon 1 of 11)	exon (NM_033572, exon 1 of 11)	199.0	NM_033572	94254.0	Mm.29508	NM_033572	ENSMUSG00000061979	Rcc1l	5730496C04Rik|AU019812|Wbscr16	reculator of chromosome condensation 1 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86576704-2	chr11	86576204	86577204	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	7454.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-18641883-4	chr3	18641394	18642394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-161417.0	NR_040544	73959.0	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-127561314-4	chr6	127560829	127561829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-16646.0	NM_001033464	381812.0	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148678753-3	chr5	148678249	148679249	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_3-LTR_MM|LTR|ERVK	-63091.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	3.5	3.0	0.0	1.0	0.0	0.0
Merged-chr6-148578281-1	chr6	148577781	148578781	+	1000.0	f0_c57.idr	Intergenic	MLT2B2|LTR|ERVL	36028.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122181615-4	chr14	122181108	122182108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029556)	promoter-TSS (NM_029556)	-86.0	NM_029556	69634.0	Mm.34608	NM_029556	ENSMUSG00000025545	Clybl	0610033J05Rik|2310014M14Rik|AI256068|Clb	citrate lyase beta like	protein-coding	0.0	16.5	8.5	4.0	12.5	3.5
Merged-chr13-55182748-4	chr13	55182232	55183232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27050.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	16.5	33.5	14.5	4.0	19.5	14.5
Merged-chr13-91371052-4	chr13	91370534	91371534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045161, exon 3 of 3)	non-coding (NR_045161, exon 3 of 3)	17051.0	NR_045161	320297.0	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30604102-4	chr13	30603597	30604597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10946.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31112494-1	chr6	31111994	31112994	+	1000.0	f0_c57.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-49401.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-86078920-4	chr5	86078489	86079489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310639, intron 2 of 7)	intron (NM_001310639, intron 2 of 7)	7243.0	NM_001310639	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	11.0	17.0	9.5	4.0	4.5	10.5
Merged-chr8-95807593-4	chr8	95807077	95808077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178078)	promoter-TSS (NM_178078)	-115.0	NM_001205226	234594.0	Mm.259220	NM_153164	ENSMUSG00000036550	Cnot1	6030411K04Rik|AA815922|D830048B13	CCR4-NOT transcription complex, subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75342980-4	chr18	75342471	75343471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	24117.0	NR_155535	102636262.0	Mm.421168	NR_155535		Gm20544	-	predicted gene 20544	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111574439-4	chr12	111573949	111574949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045295)	promoter-TSS (NR_045295)	-47.0	NR_045295	100504687.0	Mm.26072	NR_045295	ENSMUSG00000096995	2810029C07Rik	AU017849	RIKEN cDNA 2810029C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84220892-1	chr3	84220392	84221392	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_030706)	promoter-TSS (NM_030706)	-15.0	NM_030706	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	0.0	2.0	3.5	0.0	6.0	3.0
Merged-chr4-53012068-7	chr4	53011571	53012571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025623, intron 1 of 5)	CpG	191.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	94.5	203.5	137.5	69.5	104.0	85.5
Merged-chr17-40823722-2	chr17	40823222	40824222	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011269, intron 1 of 9)	MER20|DNA|hAT-Charlie	12573.0	NM_011269	19743.0	Mm.12961	NM_011269	ENSMUSG00000023926	Rhag	CD241|Rh50|Rh50A	Rhesus blood group-associated A glycoprotein	protein-coding	0.0	0.0	3.0	0.0	0.0	1.0
Merged-chr4-134854345-3	chr4	134853843	134854843	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355501)	promoter-TSS (NM_001355501)	-998.0	NM_025382	66146.0	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61|Maco1	transmembrane protein 57	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-36248117-7	chr8	36247609	36248609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081150, intron 1 of 11)	CpG	1407.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	193.5	362.0	309.5	207.5	479.0	312.0
Merged-chr3-116865577-4	chr3	116865080	116866080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009146, intron 1 of 16)	(TCTG)n|Simple_repeat|Simple_repeat	3900.0	NM_009146	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	17.0	58.5	66.0	14.0	46.5	54.0
Merged-chr8-80952470-4	chr8	80951958	80952958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62448.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	46.0	122.5	78.0	49.0	150.5	123.0
Merged-chr7-143021538-4	chr7	143021032	143022032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_110354)	TTS (NR_110354)	15873.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	20.0	108.5	70.0	23.0	79.0	68.0
Merged-chr17-34850304-4	chr17	34849808	34850808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045864)	promoter-TSS (NM_001045864)	-83.0	NM_138580	27632.0	Mm.653	NM_138580	ENSMUSG00000024369	Nelfe	D17H6S45|NELF-E|RD|Rdbp	negative elongation factor complex member E, Rdbp	protein-coding	32.5	30.0	21.5	14.5	62.0	22.0
Merged-chr14-19415802-4	chr14	19415308	19416308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	186779.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117654714-4	chr11	117654237	117655237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 1 of 21)	CpG	448.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-129401465-4	chr7	129400967	129401967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	144373.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-113172650-1	chr11	113172150	113173150	+	1000.0	f0_c57.idr	intron (NR_015556, intron 1 of 2)	intron (NR_015556, intron 1 of 2)	29188.0	NR_015556	72386.0	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	0.0	0.0	1.0	0.0	0.0	1.5
Merged-chr2-38211642-4	chr2	38211143	38212143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146122, intron 2 of 21)	ORR1F|LTR|ERVL-MaLR	75741.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57363163-4	chr16	57362660	57363660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	RMER17B2|LTR|ERVK	9883.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127089226-1	chr2	127088726	127089726	+	1000.0	f1_c57bl6.idr	intron (NM_026678, intron 5 of 7)	intron (NM_026678, intron 5 of 7)	18569.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	1.5	1.0	1.0	1.5	1.0	2.0
Merged-chr5-120605864-4	chr5	120605381	120606381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029408, intron 4 of 4)	intron (NM_029408, intron 4 of 4)	6708.0	NM_029096	100764.0	Mm.9654	NM_029096	ENSMUSG00000029600	Rita1	1110008J03Rik|AI853657|C86297|Rita	RBPJ interacting and tubulin associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25829012-4	chr17	25828603	25829603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028101)	promoter-TSS (NM_028101)	60.0	NM_028101	72106.0	Mm.277599	NM_028101	ENSMUSG00000025736	Jmjd8	2610003J06Rik	jumonji domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-70195517-4	chr10	70195011	70196011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR25A|LTR|ERVK	-9153.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	7.5	19.5	13.0	2.0	9.0	12.0
Merged-chr5-31699140-2	chr5	31698640	31699640	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181280, intron 1 of 12)	intron (NM_181280, intron 1 of 12)	1090.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32504124-2	chr9	32503624	32504624	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	37328.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-125324716-4	chr10	125324230	125325230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 1 of 5)	MLT1B-int|LTR|ERVL-MaLR	4233.0	NM_011391	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-48086649-4	chr6	48086148	48087148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347142)	promoter-TSS (NM_001347142)	-55.0	NM_001362062	69228.0	Mm.207555	NM_001163475	ENSMUSG00000057691	Zfp746	2810407L07Rik|AI317225|Znf746	zinc finger protein 746	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59323267-4	chr10	59322756	59323756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316371)	promoter-TSS (NM_001316371)	-40.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6383622-4	chr4	6383118	6384118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016807, intron 4 of 8)	RLTR49|LTR|ERVK	17938.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156533689-4	chr1	156533195	156534195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-25092.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	47.0	126.5	63.0	104.5	132.0	109.5
Merged-chr1-165717903-4	chr1	165717400	165718400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9806.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-62720359-4	chr1	62719805	62720805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	16988.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127030839-4	chr10	127030342	127031342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025537)	promoter-TSS (NM_025537)	-28.0	NM_025537	66399.0	Mm.29900	NM_025537	ENSMUSG00000040521	Tsfm	2310050B20Rik|9430024O13Rik|EF-TS|EF-Tsmt	Ts translation elongation factor, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93119075-4	chr1	93118610	93119610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16130.0	NM_001276710	11611.0	Mm.7457	NM_016702	ENSMUSG00000026272	Agxt	AGT|Agt1|Agxt1|SPT	alanine-glyoxylate aminotransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160367127-4	chr2	160366613	160367613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010658)	promoter-TSS (NM_010658)	-48.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	10.5	21.0	12.5	14.5	37.0	6.5
Merged-chr4-40948423-4	chr4	40947906	40948906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009736)	promoter-TSS (NM_009736)	-112.0	NM_001171739	12017.0	Mm.688	NM_009736	ENSMUSG00000028416	Bag1	BAG-1|Rap46	BCL2-associated athanogene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78720912-2	chr15	78720412	78721412	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER3|DNA|hAT-Charlie	-2141.0	NM_001358692	207393.0	Mm.323188	NM_183141	ENSMUSG00000043460	Elfn2	6330514E13|AW048948|BC094219|Lrrc62|Ppp1r29	leucine rich repeat and fibronectin type III, extracellular 2	protein-coding	7.0	0.0	0.0	7.0	0.0	0.0
Merged-chr8-108691989-4	chr8	108691492	108692492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22652.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	10.5	27.0	12.5	18.0	25.0	8.5
Merged-chr18-60560747-4	chr18	60560244	60561244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025776)	promoter-TSS (NM_025776)	-42.0	NM_025776	66810.0	Mm.275106	NM_025776	ENSMUSG00000024604	Rbm22	8430430L24Rik	RNA binding motif protein 22	protein-coding	23.0	43.5	16.5	23.0	43.5	16.5
Merged-chr7-90443710-4	chr7	90443192	90444192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145151, exon 1 of 1)	exon (NM_145151, exon 1 of 1)	911.0	NR_073438	233490.0	Mm.29496	NM_145151	ENSMUSG00000051451	Crebzf	1110034C16Rik|6330417B10Rik|LAZip|LAZipII|SMILE|Zf	CREB/ATF bZIP transcription factor	protein-coding	0.0	7.5	2.5	0.0	4.5	4.0
Merged-chr2-167062714-4	chr2	167062192	167063192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_138563)	promoter-TSS (NR_138563)	-242.0	NR_138563	68949.0	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-8495373-4	chr6	8494884	8495884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13777.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32125127-2	chr5	32124627	32125627	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11345.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156111841-4	chr2	156111277	156112277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029397, intron 1 of 2)	CpG	188.0	NM_170598	75710.0	Mm.27660	NM_029397	ENSMUSG00000089824	Rbm12	5730420G12Rik|9430070C08Rik|AI852903|SWAN|mKIAA0765	RNA binding motif protein 12	protein-coding	39.0	71.5	98.0	56.0	106.5	89.5
Merged-chr5-100526340-4	chr5	100525857	100526857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359204, intron 2 of 10)	intron (NM_001359204, intron 2 of 10)	8048.0	NM_001359204	26891.0	Mm.957	NM_012001	ENSMUSG00000035297	Cops4	AW208976|D5Ertd774e|SGN4	COP9 signalosome subunit 4	protein-coding	0.0	19.5	7.0	10.0	9.5	19.5
Merged-chr10-62504068-4	chr10	62503571	62504571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 2 of 3)	intron (NM_001358965, intron 2 of 3)	3686.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-8368180-4	chr5	8367681	8368681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001098225)	promoter-TSS (NM_001098225)	-21.0	NM_001310439	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111489322-3	chr13	111488818	111489818	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028487, intron 1 of 12)	CpG	809.0	NM_028487	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3835642-4	chr4	3835135	3836135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026147)	promoter-TSS (NM_026147)	20.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	10.5	17.0	13.0	9.0	14.5	5.5
Merged-chr3-116808242-4	chr3	116807753	116808753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081326)	promoter-TSS (NM_001081326)	-87.0	NM_001081326	77559.0	Mm.237099	NM_001081326	ENSMUSG00000033400	Agl	1110061O17Rik|9430004C13Rik|9630046L06Rik|AI850929|C77197	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	protein-coding	78.0	161.5	129.5	74.5	202.5	137.5
Merged-chr6-71494491-2	chr6	71493991	71494991	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001308303, exon 1 of 4)	5' UTR (NM_001308303, exon 1 of 4)	614.0	NM_001308303	22644.0	Mm.422969	NM_009543	ENSMUSG00000052656	Rnf103	AW146237|AW212918|Zfp103|kf-1	ring finger protein 103	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78497821-4	chr11	78497335	78498335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172795)	promoter-TSS (NM_172795)	-81.0	NM_172795	237868.0	Mm.210332	NM_172795	ENSMUSG00000050132	Sarm1	A830091I15Rik|C78606|MyD885|Sarm	sterile alpha and HEAT/Armadillo motif containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93816590-4	chr16	93816122	93817122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15499.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	60.5	138.0	95.5	48.5	112.5	81.5
Merged-chr2-11375263-4	chr2	11374789	11375789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040615, intron 1 of 2)	intron (NR_040615, intron 1 of 2)	23211.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92382595-2	chr16	92382095	92383095	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105054)	promoter-TSS (NR_105054)	88.0	NR_105054	101056236.0	Mm.149108	NR_105054		Gm29805	-	predicted gene, 29805	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35140054-4	chr7	35139551	35140551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20758.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136137262-4	chr1	136136800	136137800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	5910.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78466968-2	chr10	78466468	78467468	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2020.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16875130-4	chr7	16874630	16875630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081655)	promoter-TSS (NM_001081655)	-187.0	NM_001081655	629378.0	Mm.491123	NM_001081655	ENSMUSG00000078794	Dact3	EG666671|naa-3	dishevelled-binding antagonist of beta-catenin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97081015-2	chr7	97080520	97081520	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010248)	promoter-TSS (NM_010248)	-731.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	45.5	128.5	75.5	66.5	119.0	81.5
Merged-chr18-35598608-4	chr18	35598091	35599091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357472)	promoter-TSS (NM_001357472)	-26.0	NM_001357470	67869.0	Mm.126534	NM_026420	ENSMUSG00000037058	Paip2	2310050K10Rik|AU045972	polyadenylate-binding protein-interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54377327-4	chr14	54376808	54377808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 6 of 11)	intron (NM_011405, intron 6 of 11)	16467.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	26.5	137.5	129.5	38.5	159.5	84.5
Merged-chr17-27570724-2	chr17	27570224	27571224	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-4997.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	11.5	28.5	8.5	9.0	17.0	15.0
Merged-chr6-87810934-4	chr6	87810428	87811428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104478, intron 1 of 2)	intron (NR_104478, intron 1 of 2)	851.0	NM_001039394	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	11.0	31.5	23.5	20.5	19.0	12.5
Merged-chr8-35597256-4	chr8	35596784	35597784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-8264.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	69.5	70.0	65.5	33.5	81.0	101.0
Merged-chr11-69045618-4	chr11	69045115	69046115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011496)	promoter-TSS (NM_011496)	-22.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-49834155-4	chr18	49833655	49834655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081371, intron 1 of 42)	intron (NM_001081371, intron 1 of 42)	1158.0	NM_001081371	240283.0	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94761061-4	chr11	94760552	94761552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001105561, exon 1 of 5)	5' UTR (NM_001105561, exon 1 of 5)	130.0	NM_001105561	217122.0	Mm.24063	NM_183153		Gm11545	A430060F13Rik|C86086	predicted gene 11545	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110826050-4	chr9	110825549	110826549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199471)	promoter-TSS (NM_199471)	-641.0	NM_199471	272643.0	Mm.458525	NM_199471	ENSMUSG00000058398	Prss43	Gm661|Tessp3	protease, serine 43	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8659918-4	chr12	8659420	8660420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-14214.0	NM_001160221	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61914558-4	chr9	61914058	61915058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018853)	promoter-TSS (NM_018853)	-48.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101264434-2	chr4	101263934	101264934	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 1 of 24)	intron (NM_146145, intron 1 of 24)	848.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51395916-4	chr13	51395433	51396433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12685.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3325526-4	chr19	3325024	3326024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 1 of 18)	CpG	2223.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	54.0	161.0	100.5	81.5	157.0	111.0
Merged-chr5-123077237-2	chr5	123076737	123077737	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039723, intron 1 of 11)	intron (NM_001039723, intron 1 of 11)	962.0	NM_001039723	330189.0	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99043540-4	chr7	99043042	99044042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 6 of 14)	intron (NM_178635, intron 6 of 14)	97602.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	4.5	8.0	8.0	0.0	6.0	8.5
Merged-chr6-115838491-4	chr6	115837990	115838990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110506)	promoter-TSS (NM_001110506)	-78.0	NM_001110506	212516.0	Mm.333333	NM_198603	ENSMUSG00000030321	Efcab12	BB124106	EF-hand calcium binding domain 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45830860-4	chr7	45830363	45831363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153419)	promoter-TSS (NM_153419)	-74.0	NM_153419	101612.0	Mm.274847	NM_153419	ENSMUSG00000053801	Grwd1	A301|AI504353|Grwd|Wdr28	glutamate-rich WD repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115158350-4	chr5	115157890	115158890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175403)	promoter-TSS (NM_175403)	-214.0	NM_175403	109154.0	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	8.0	4.0	7.0	1.0	5.5	11.5
Merged-chr14-21814044-4	chr14	21813552	21814552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-17509.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	16.5	9.0	7.5	18.5	11.5	8.0
Merged-chr11-119480365-2	chr11	119479865	119480865	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153849, intron 2 of 3)	MTC|LTR|ERVL-MaLR	10870.0	NR_153849	78439.0	Mm.440446	NR_153849	ENSMUSG00000109408	A930037H05Rik	Gm44935	RIKEN cDNA A930037H05 gene	ncRNA	0.0	2.5	1.0	1.0	3.0	0.5
Merged-chr9-89198910-1	chr9	89198410	89199410	+	1000.0	f0_balb.idr	promoter-TSS (NM_007534)	promoter-TSS (NM_007534)	-363.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32292578-3	chr12	32292081	32293081	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-83932.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-65806590-4	chr11	65806084	65807084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026107)	promoter-TSS (NM_026107)	-591.0	NM_001302374	52712.0	Mm.340052	NM_026107	ENSMUSG00000018347	Zkscan6	1700128E15Rik|D11Ertd714e|KOX11|Zfp535|Znf18	zinc finger with KRAB and SCAN domains 6	protein-coding	2.0	14.5	11.0	16.0	24.5	24.5
Merged-chr11-75453527-2	chr11	75453027	75454027	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_138950, exon 1 of 10)	exon (NM_138950, exon 1 of 10)	1190.0	NM_138950	192652.0	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127876201-4	chr7	127875692	127876692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362191)	promoter-TSS (NM_001362191)	-550.0	NM_001362191	244219.0	Mm.207872	NM_146259	ENSMUSG00000049728	Zfp668	BC030314|E130018B19Rik|Znf668	zinc finger protein 668	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-174328621-2	chr2	174328121	174329121	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001310083, exon 2 of 13)	5' UTR (NM_001310083, exon 2 of 13)	707.0	NR_003258	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	3.0	18.5	7.5	3.0	19.5	7.5
Merged-chr1-135753111-4	chr1	135752617	135753617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_153810)	TTS (NR_153810)	-12968.0	NM_013750	27280.0	Mm.34346	NM_013750	ENSMUSG00000041801	Phlda3	Tih1	pleckstrin homology like domain, family A, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39592651-4	chr6	39592148	39593148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358797)	promoter-TSS (NM_001358797)	83.0	NR_152450	68198.0	Mm.29415	NM_026612	ENSMUSG00000002416	Ndufb2	1810011O01Rik|8kDa|AGGG|AI325567|CI-AGGG	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-65693470-4	chr7	65692909	65693909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026795)	promoter-TSS (NM_026795)	-8.0	NM_178056	68634.0	Mm.476828	NM_026795	ENSMUSG00000078681	Tm2d3	1110025I09Rik|5930422O05Rik|Blp2	TM2 domain containing 3	protein-coding	10.5	13.5	11.0	10.5	13.0	9.5
Merged-chr4-140989629-3	chr4	140989092	140990092	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164366, intron 1 of 28)	intron (NM_001164366, intron 1 of 28)	2719.0	NM_001164366	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131827932-4	chr1	131827447	131828447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173865)	promoter-TSS (NM_173865)	-65.0	NM_173865	98396.0	Mm.389181	NM_173865	ENSMUSG00000013275	Slc41a1	AI573938|B230315F01Rik	solute carrier family 41, member 1	protein-coding	21.5	25.5	33.0	21.0	23.5	32.0
Merged-chr10-77972352-3	chr10	77971843	77972843	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2471.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120502210-4	chr5	120501724	120502724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023625, intron 1 of 11)	intron (NM_023625, intron 1 of 11)	1399.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-44269719-4	chr12	44269219	44270219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026164, intron 1 of 9)	intron (NM_026164, intron 1 of 9)	565.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43494085-1	chr4	43493585	43494585	+	1000.0	f1_c57bl6.idr	intron (NM_001037913, intron 2 of 5)	intron (NM_001037913, intron 2 of 5)	720.0	NM_001037913	622404.0	Mm.289109	NM_001037913	ENSMUSG00000028461	Ccdc107	-	coiled-coil domain containing 107	protein-coding	5.5	34.0	33.5	20.5	25.5	21.0
Merged-chr10-67284921-4	chr10	67284411	67285411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001036293, intron 1 of 3)	CpG	370.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34390925-4	chr7	34390424	34391424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-1219.0	NM_025948	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120110783-4	chr9	120110288	120111288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144793, intron 1 of 6)	CpG	389.0	NM_144793	208638.0	Mm.236656	NM_144793	ENSMUSG00000032519	Slc25a38	AV019094|BC010801|appoptosin	solute carrier family 25, member 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117288414-4	chr10	117287899	117288899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013590, exon 4 of 4)	3' UTR (NM_013590, exon 4 of 4)	4469.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-116262982-4	chr12	116262487	116263487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146039)	promoter-TSS (NM_146039)	38.0	NM_146039	217935.0	Mm.31382	NM_146039	ENSMUSG00000042050	Wdr60	D430033N04Rik	WD repeat domain 60	protein-coding	7.5	24.0	10.0	19.0	18.5	12.0
Merged-chr19-8892990-4	chr19	8892487	8893487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176843)	promoter-TSS (NM_176843)	0.0	NM_176843	109077.0	Mm.290474	NM_176843	ENSMUSG00000071652	Ints5	1110055N21Rik|mKIAA1698	integrator complex subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12740735-4	chr18	12740240	12741240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181731)	promoter-TSS (NM_181731)	-615.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108829096-3	chr6	108828594	108829594	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_138677, exon 1 of 12)	exon (NM_138677, exon 1 of 12)	453.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0.5	12.0	11.5	0.0	4.5	8.5
Merged-chr17-28420542-4	chr17	28420057	28421057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 5 of 10)	intron (NM_010220, intron 5 of 10)	-55341.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38089330-3	chr16	38088830	38089830	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033221)	promoter-TSS (NR_033221)	-70.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-6286436-4	chr7	6285932	6286932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024928)	promoter-TSS (NM_001024928)	-148.0	NM_001024928	384763.0	Mm.276279	NM_001024928	ENSMUSG00000054893	Zfp667	A830025F02Rik|Mip1|ZNF667	zinc finger protein 667	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42089410-4	chr19	42088893	42089893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1042.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	143.5	367.0	269.5	144.0	314.0	200.5
Merged-chr4-129032318-4	chr4	129031827	129032827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25944.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111259175-5	chr8	111258598	111259598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009149, exon 1 of 26)	exon (NM_009149, exon 1 of 26)	104.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	29.5	38.0	30.5	16.0	66.0	68.0
Merged-chr11-50371509-2	chr11	50371009	50372009	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6210.0	NM_021510	59013.0	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-31634651-4	chr12	31634180	31635180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164090)	promoter-TSS (NM_001164090)	-22.0	NM_001164090	12033.0	Mm.242379	NM_007530	ENSMUSG00000020650	Bcap29	AW208404|Bap29	B cell receptor associated protein 29	protein-coding	42.5	70.0	56.0	45.0	69.0	56.0
Merged-chr18-32147632-4	chr18	32147125	32148125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8055.0	NM_001042767	19123.0	Mm.2786	NM_008934	ENSMUSG00000024386	Proc	PC	protein C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126492656-2	chr8	126492156	126493156	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-17591.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118607368-7	chr9	118606968	118607968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	759.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92973075-4	chr1	92972554	92973554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001104529)	promoter-TSS (NM_001104529)	-65.0	NM_001104529	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35066748-4	chr12	35066241	35067241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014973, intron 1 of 25)	Lx8|LINE|L1	19552.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	39.5	52.0	50.5	53.5	53.5	50.0
Merged-chr3-105816271-4	chr3	105815772	105816772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045845, intron 2 of 2)	intron (NR_045845, intron 2 of 2)	705.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	71.5	99.5	72.5	26.5	72.0	57.5
Merged-chr1-192089995-4	chr1	192089583	192090583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011633, intron 1 of 9)	intron (NM_011633, intron 1 of 9)	2516.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51454142-4	chr10	51453644	51454644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26468.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95160363-4	chr3	95159847	95160847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001272024)	promoter-TSS (NM_001272024)	-73.0	NR_073550	20360.0	Mm.23662	NM_011351	ENSMUSG00000038777	Sema6c	Semay|mKIAA1869	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	protein-coding	0.0	0.0	0.0	6.5	0.0	1.0
Merged-chr2-27763580-4	chr2	27763082	27764082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011305)	TTS (NM_011305)	52999.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-89069655-4	chr1	89069175	89070175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133816)	promoter-TSS (NM_133816)	-740.0	NM_133816	98402.0	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54426879-4	chr14	54426377	54427377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026851)	promoter-TSS (NM_026851)	-32.0	NM_026851	68836.0	Mm.248163	NM_026851	ENSMUSG00000010406	Mrpl52	1110047B07Rik	mitochondrial ribosomal protein L52	protein-coding	6.5	31.5	11.5	9.5	19.0	25.0
Merged-chr4-63410783-4	chr4	63410290	63411290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7345.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38338431-4	chr18	38337913	38338913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011937, intron 1 of 6)	intron (NM_011937, intron 1 of 6)	580.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44729613-4	chr10	44729118	44730118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-270870.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36282596-2	chr15	36282096	36283096	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357631, intron 1 of 7)	CpG	551.0	NM_013923	30945.0	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-116460581-4	chr12	116460083	116461083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133762, exon 29 of 29)	exon (NM_133762, exon 29 of 29)	-25137.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	67.0	72.0	89.5	33.0	56.5	63.0
Merged-chr10-62219032-3	chr10	62218540	62219540	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 1 of 7)	intron (NM_197996, intron 1 of 7)	12178.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50827539-4	chr15	50827045	50828045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 3 of 5)	intron (NM_001310481, intron 3 of 5)	61504.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	7.0	8.0	19.5	12.0	15.5	6.5
Merged-chr16-17759619-4	chr16	17759122	17760122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145479)	promoter-TSS (NM_145479)	1.0	NM_001359068	224023.0	Mm.282807	NM_145479	ENSMUSG00000022750	Klhl22	2610318I18Rik|Kelchl	kelch-like 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38871191-4	chr6	38870606	38871606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 1 of 14)	intron (NM_010433, intron 1 of 14)	5084.0	NM_010433	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35768954-3	chr16	35768462	35769462	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153550, exon 1 of 9)	exon (NM_153550, exon 1 of 9)	394.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	0.0	0.5	3.0	0.0	0.5	3.0
Merged-chr2-122118419-4	chr2	122117922	122118922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145531)	promoter-TSS (NM_145531)	-36.0	NM_145531	214585.0	Mm.222303	NM_145531	ENSMUSG00000033396	Spg11	6030465E24Rik|A330015I11|C530005A01Rik	SPG11, spatacsin vesicle trafficking associated	protein-coding	95.5	161.5	117.0	83.5	151.0	114.5
Merged-chr11-48787956-4	chr11	48787452	48788452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-12408.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92787165-4	chr16	92786632	92787632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	38942.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-69180063-2	chr17	69179563	69180563	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	20707.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80400468-2	chr10	80399968	80400968	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001306143)	promoter-TSS (NM_001306143)	-937.0	NM_001306143	17192.0	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4160763-2	chr19	4160263	4161263	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153661, intron 5 of 14)	intron (NR_153661, intron 5 of 14)	2620.0	NR_153661	58988.0	Mm.271937	NM_021485	ENSMUSG00000024830	Rps6kb2	S6K-beta-2|S6K2	ribosomal protein S6 kinase, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-139205722-4	chr3	139205244	139206244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198659)	promoter-TSS (NM_198659)	-149.0	NM_198659	381476.0	Mm.188334	NM_198659	ENSMUSG00000047940	Stpg2	B930007M17Rik|Gm1017	sperm tail PG rich repeat containing 2	protein-coding	40.0	112.0	94.5	25.0	75.5	69.5
Merged-chr8-70630901-4	chr8	70630413	70631413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011819, intron 1 of 1)	intron (NM_011819, intron 1 of 1)	1182.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	95.5	178.5	115.5	30.5	58.0	80.5
Merged-chr5-67450306-7	chr5	67449789	67450789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-13609.0	NR_110363	320479.0	Mm.387187	NR_015582	ENSMUSG00000107385	C330024D21Rik	-	RIKEN cDNA C330024D21 gene	ncRNA	16.0	11.0	11.0	17.0	15.0	16.5
Merged-chr17-74018443-4	chr17	74017938	74018938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053188, intron 4 of 4)	Lx8|LINE|L1	29478.0	NM_053188	94224.0	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81377781-2	chr10	81377281	81378281	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019757, intron 1 of 13)	intron (NM_019757, intron 1 of 13)	589.0	NM_019757	56371.0	Mm.24202	NM_019757	ENSMUSG00000020235	Fzr1	AW108046|Cdh1|FZR|FZR2|Fyr|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39134024-4	chr10	39133532	39134532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028006)	promoter-TSS (NM_028006)	9.0	NM_028006	71924.0	Mm.297956	NM_028006	ENSMUSG00000019845	Tube1	2310061K05Rik|AI551343|Tube	epsilon-tubulin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119925447-4	chr9	119924929	119925929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028976)	TTS (NM_028976)	12129.0	NM_028976	74498.0	Mm.104789	NM_028976	ENSMUSG00000032513	Gorasp1	5430411C10Rik|GOLPH5|GRASP65|P65	golgi reassembly stacking protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87984654-4	chr17	87984153	87985153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010830, exon 4 of 10)	exon (NM_010830, exon 4 of 10)	9603.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-18846301-4	chr8	18845809	18846809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026792)	promoter-TSS (NM_026792)	30.0	NM_026792	52123.0	Mm.24117	NM_026792	ENSMUSG00000031467	Agpat5	1110013A05Rik|D8Ertd319e	1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90509425-4	chr2	90508927	90509927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-30253.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44702275-4	chr10	44701777	44702777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-243529.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-176075661-3	chr1	176075148	176076148	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357846, intron 2 of 8)	intron (NM_001357846, intron 2 of 8)	138294.0	NM_001357845	319455.0	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58330681-4	chr11	58330171	58331171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161338)	promoter-TSS (NM_001161338)	-36.0	NM_001161338	79566.0	Mm.290534	NM_024480	ENSMUSG00000013646	Sh3bp5l	2310074E09Rik|BC003251|mKIAA1720	SH3 binding domain protein 5 like	protein-coding	64.5	134.5	90.0	69.5	150.0	94.0
Merged-chr18-36726700-4	chr18	36726197	36727197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009841, exon 1 of 2)	5' UTR (NM_009841, exon 1 of 2)	118.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80018821-6	chr7	80018363	80019363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-5951.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	31.5	52.5	49.0	23.0	55.0	36.5
Merged-chr13-83656852-2	chr13	83656352	83657352	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347579, intron 10 of 10)	intron (NM_001347579, intron 10 of 10)	-64529.0	NR_152244	320203.0	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik|ECONEXIN|EyeLinc1|Visc-1	RIKEN cDNA C130071C03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50659598-4	chr9	50659091	50660091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145614, exon 1 of 14)	5' UTR (NM_145614, exon 1 of 14)	189.0	NM_145614	235339.0	Mm.285076	NM_145614	ENSMUSG00000000168	Dlat	6332404G05Rik|DLTA|PDC-E2	dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	protein-coding	4.0	16.0	14.5	7.5	11.0	9.5
Merged-chr1-161998943-4	chr1	161998460	161999460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038619, intron 20 of 20)	intron (NM_001038619, intron 20 of 20)	-6009.0	NR_040562	72753.0	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA	21.0	57.0	48.0	35.0	68.0	69.0
Merged-chr9-110459330-4	chr9	110458809	110459809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360306, intron 1 of 9)	MER58B|DNA|hAT-Charlie	17385.0	NM_001360306	270201.0	Mm.41744	NM_177771	ENSMUSG00000054792	Klhl18	A930041K15|AW545966	kelch-like 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33916017-4	chr17	33915495	33916495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020625)	promoter-TSS (NM_020625)	-181.0	NM_020625	81630.0	Mm.482096	NM_020625	ENSMUSG00000051390	Zbtb22	1110008J20Rik|AI265210|AI415166|Bing1|Zfp297	zinc finger and BTB domain containing 22	protein-coding	0.0	13.0	8.5	12.0	34.5	8.0
Merged-chr10-59222684-4	chr10	59222187	59223187	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024911)	promoter-TSS (NM_001024911)	765.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-56089691-3	chr1	56089189	56090189	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70711.0	NR_126076	69356.0	Mm.393775	NR_126075	ENSMUSG00000100372	1700003I22Rik	-	RIKEN cDNA 1700003I22 gene	ncRNA	2.5	3.0	4.0	2.5	6.0	4.5
Merged-chr11-22990922-2	chr11	22990422	22991422	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009837, intron 1 of 13)	CpG	329.0	NM_009837	12464.0	Mm.296985	NM_009837	ENSMUSG00000007739	Cct4	2610204B21Rik|A45|C78323|Cctd	chaperonin containing Tcp1, subunit 4 (delta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-77343921-4	chr14	77343416	77344416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253759, intron 3 of 19)	intron (NM_001253759, intron 3 of 19)	162952.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	47.0	123.5	76.0	76.0	184.5	167.5
Merged-chr5-34562983-2	chr5	34562483	34563483	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001145858, exon 13 of 13)	3' UTR (NM_001145858, exon 13 of 13)	-10681.0	NM_001024458	11518.0	Mm.289106	NM_013457	ENSMUSG00000029106	Add1	AI256389	adducin 1 (alpha)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18836649-4	chr16	18836168	18837168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033164)	promoter-TSS (NM_001033164)	88.0	NM_001033164	72307.0	Mm.36907	NM_001033164	ENSMUSG00000071632	2510002D24Rik	2410043I01Rik|AA163535|AA409624|DXMgi27	RIKEN cDNA 2510002D24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-27387887-4	chr16	27387375	27388375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1081.0	NM_001025615	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-81036824-4	chr3	81036328	81037328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019971, exon 1 of 6)	5' UTR (NM_019971, exon 1 of 6)	412.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40525608-3	chr10	40525108	40526108	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44754.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-30087456-3	chr18	30086947	30087947	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-185418.0	NM_181414	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	0.0	0.0	0.0	1.0	0.0	1.0
Merged-chr11-58104519-4	chr11	58104014	58105014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356477, intron 1 of 6)	CpG	285.0	NM_001356477	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	70.0	184.5	139.5	105.5	263.0	155.5
Merged-chr7-96302889-3	chr7	96302380	96303380	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310760, intron 1 of 32)	intron (NM_001310760, intron 1 of 32)	-2787.0	NR_105818	102465210.0		NR_105818	ENSMUSG00000099030	Mir6394	Gm27929|mmu-mir-6394	microRNA 6394	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35062961-2	chr7	35062461	35063461	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-6395.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121641022-2	chr9	121640522	121641522	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026915, intron 1 of 5)	intron (NM_026915, intron 1 of 5)	571.0	NM_026915	69032.0	Mm.33351	NM_026915	ENSMUSG00000032530	Lyzl4	1810009N24Rik|AI504271|Lyc4|Lyza	lysozyme-like 4	protein-coding	0.0	1.0	9.0	0.0	5.5	9.0
Merged-chr10-80149536-4	chr10	80149019	80150019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305799)	promoter-TSS (NM_001305799)	-163.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10294746-6	chr19	10294254	10295254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	10123.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	39.5	112.0	54.5	58.0	86.0	52.0
Merged-chr5-96856769-4	chr5	96856266	96857266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63381.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	13.0	10.5	24.5	6.5	19.5	24.0
Merged-chr14-7994285-4	chr14	7993750	7994750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007870)	promoter-TSS (NM_007870)	-68.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71043192-2	chr2	71042692	71043692	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 1 of 9)	MTD|LTR|ERVL-MaLR	12414.0	NM_145524	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84773083-4	chr12	84772573	84773573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023409)	promoter-TSS (NM_023409)	39.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86168750-4	chr15	86168251	86169251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-16977.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12569921-4	chr13	12569412	12570412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026184, intron 1 of 15)	intron (NM_026184, intron 1 of 15)	4029.0	NM_026184	67475.0	Mm.358706	NM_026184	ENSMUSG00000057069	Ero1lb	1300013B24Rik|1700065B09Rik|AI447560|Ero1b|ero1-beta	ERO1-like beta (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-58530596-4	chr18	58530098	58531098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25642.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61476246-2	chr10	61475746	61476746	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153542, intron 1 of 4)	intron (NM_153542, intron 1 of 4)	413.0	NM_153542	216011.0	Mm.136116	NM_153542	ENSMUSG00000037151	Lrrc20	BC036304	leucine rich repeat containing 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27710519-4	chr3	27710005	27711005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173182)	promoter-TSS (NM_173182)	-53.0	NM_173182	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70699636-1	chr8	70699136	70700136	+	1000.0	f0_balb.idr	exon (NM_010592, exon 1 of 1)	exon (NM_010592, exon 1 of 1)	1897.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	31.5	110.5	90.5	66.0	110.5	71.5
Merged-chr8-116580835-2	chr8	116580335	116581335	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 5 of 6)	intron (NM_029441, intron 5 of 6)	75820.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-58633690-2	chr7	58633190	58634190	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24512.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7955445-4	chr10	7954950	7955950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138667, intron 1 of 6)	CpG	673.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-58446821-4	chr10	58446315	58447315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011240)	promoter-TSS (NM_011240)	-37.0	NM_011240	19386.0	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105801356-4	chr3	105800853	105801853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145541)	promoter-TSS (NM_145541)	28.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152112106-4	chr2	152111590	152112590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029688)	TTS (NM_029688)	6566.0	NM_029688	76650.0	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69985760-4	chr12	69985264	69986264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022028, intron 1 of 4)	intron (NM_022028, intron 1 of 4)	1238.0	NM_022028	64010.0	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64234592-4	chr15	64234097	64235097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	78076.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55839349-4	chr16	55838846	55839846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030612)	promoter-TSS (NM_030612)	-705.0	NM_001159395	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49467993-4	chr7	49467538	49468538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 10 of 37)	intron (NM_175272, intron 10 of 37)	168797.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76371019-4	chr12	76370521	76371521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178744, intron 1 of 1)	CpG-3289	755.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-108834362-7	chr4	108833875	108834875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356361)	promoter-TSS (NM_001356361)	-73.0	NM_001356361	70533.0	Mm.379178	NM_027453	ENSMUSG00000028568	Btf3l4	4632412E09Rik|5730434I03Rik|AI316863|AU022207|AW552446	basic transcription factor 3-like 4	protein-coding	47.0	100.5	60.0	50.5	100.0	69.5
Merged-chr19-7040095-4	chr19	7039591	7040591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016737)	promoter-TSS (NM_016737)	-65.0	NM_016737	20867.0	Mm.258633	NM_016737	ENSMUSG00000024966	Stip1	Hop|Sti1|p60	stress-induced phosphoprotein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-64951093-4	chr8	64950580	64951580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163747, intron 1 of 4)	B3A|SINE|B2	3895.0	NM_028427	73067.0	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-57230967-2	chr2	57230467	57231467	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6711.0	NM_001145820	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29692827-4	chr11	29692335	29693335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194053)	promoter-TSS (NM_194053)	-63.0	NM_194053	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	31.5	93.5	75.5	16.5	78.0	50.0
Merged-chr15-43477146-4	chr15	43476641	43477641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046064)	promoter-TSS (NR_046064)	-88.0	NM_025736	66736.0	Mm.244512	NM_025736	ENSMUSG00000022337	Emc2	4921531G14Rik|AV060620|AW209495|Ttc35	ER membrane protein complex subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-14826580-4	chr4	14826088	14827088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152812)	promoter-TSS (NM_152812)	-1.0	NM_152812	72201.0	Mm.387724	NM_152812	ENSMUSG00000040550	Otud6b	2600013N14Rik|AU015433	OTU domain containing 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172341102-4	chr1	172340606	172341606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039484)	promoter-TSS (NM_001039484)	-104.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	40.0	44.5	33.0	37.5	79.5	72.0
Merged-chr7-80766217-4	chr7	80765697	80766697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 4 of 37)	intron (NM_016721, intron 4 of 37)	37134.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	8.5	26.0	14.5	9.0	26.0	19.5
Merged-chr1-59670799-4	chr1	59670302	59671302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009460)	promoter-TSS (NM_009460)	32.0	NM_009460	22218.0	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107470775-4	chr11	107470251	107471251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145823)	promoter-TSS (NM_145823)	-31.0	NM_145823	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81133704-4	chr13	81133121	81134121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	169547.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41774257-4	chr19	41773752	41774752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027667, intron 9 of 11)	intron (NM_027667, intron 9 of 11)	27291.0	NR_040320	100502871.0	Mm.394485	NR_040320		Gm19424	-	predicted gene, 19424	ncRNA	237.5	532.5	423.0	177.5	332.5	272.0
Merged-chr15-50854602-4	chr15	50854095	50855095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032000, intron 1 of 5)	intron (NM_032000, intron 1 of 5)	34454.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	4.5	15.5	6.5	0.0	5.0	1.0
Merged-chr6-87542143-4	chr6	87541658	87542658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8899.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79254985-7	chr2	79254517	79255517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010576)	promoter-TSS (NM_010576)	-409.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-7085290-4	chr15	7084780	7085780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44292.0	NM_001113386	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-130858163-4	chr7	130857665	130858665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7559.0	NM_133942	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-145204441-4	chr5	145203922	145204922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167944)	promoter-TSS (NM_001167944)	-137.0	NM_001359187	22757.0	Mm.332842	NM_016683	ENSMUSG00000055991	Zkscan5	AI132486|AI326970|Zfp95|hKraba1	zinc finger with KRAB and SCAN domains 5	protein-coding	17.5	75.0	66.0	44.5	64.0	39.5
Merged-chr15-102296215-4	chr15	102295707	102296707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001014976)	promoter-TSS (NM_001014976)	-86.0	NM_001014976	105988.0	Mm.288324	NM_001014976	ENSMUSG00000058290	Espl1	AL024103|AU045071|Cerp|ESP1|PRCE|SSE	extra spindle pole bodies 1, separase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-47022706-4	chr7	47022206	47023206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-14292.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45269154-4	chr9	45268655	45269655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008348)	promoter-TSS (NM_008348)	-6.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76370249-4	chr16	76369752	76370752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	2797.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128751123-4	chr2	128750650	128751650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 5 of 18)	(A)n|Simple_repeat|Simple_repeat	52235.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	20.5	30.0	17.0	10.0	18.0	22.0
Merged-chr15-99225555-2	chr15	99225055	99226055	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010601, intron 1 of 14)	intron (NM_010601, intron 1 of 14)	579.0	NM_010601	16512.0	Mm.374793	NM_010601	ENSMUSG00000037579	Kcnh3	AU019351|C030044P22Rik|Elk2|Kv12.2|Melk2	potassium voltage-gated channel, subfamily H (eag-related), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100183320-4	chr13	100182813	100183813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126182, intron 5 of 15)	intron (NM_001126182, intron 5 of 15)	18809.0	NM_001126182	17948.0	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-19658585-6	chr2	19658121	19659121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033642)	promoter-TSS (NR_033642)	559.0	NM_027715	71198.0	Mm.83981	NM_027715	ENSMUSG00000043415	Otud1	4933428L19Rik	OTU domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142590607-4	chr3	142590057	142591057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-4290.0	NM_010259	14468.0	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	11.5	16.0	13.0	7.5	19.0	12.0
Merged-chr5-124498413-4	chr5	124497933	124498933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021430, intron 6 of 6)	intron (NM_021430, intron 6 of 6)	15278.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60288808-4	chr2	60288305	60289305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4321.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-185332123-4	chr1	185331637	185332637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011794)	promoter-TSS (NM_011794)	-22.0	NM_011794	23827.0	Mm.227549	NM_011794	ENSMUSG00000026617	Bpnt1	BPntase	bisphosphate 3'-nucleotidase 1	protein-coding	121.5	230.0	125.0	96.0	232.5	132.5
Merged-chr2-180171440-4	chr2	180170940	180171940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019822)	promoter-TSS (NM_019822)	-148.0	NM_019822	56436.0	Mm.316654	NM_019822	ENSMUSG00000039041	Adrm1	1110063P18Rik|2510006J17Rik|AA408205|ARM-1|AU043535|Arm1|Gp110|Rpn13	adhesion regulating molecule 1	protein-coding	4.5	8.0	15.0	2.0	30.5	20.5
Merged-chr11-78161133-2	chr11	78160633	78161633	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009423, exon 5 of 7)	exon (NM_009423, exon 5 of 7)	4417.0	NM_009423	22032.0	Mm.390418	NM_009423	ENSMUSG00000017386	Traf4	A530032M13Rik|CART1|msp2	TNF receptor associated factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191026270-4	chr1	191025774	191026774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198025)	promoter-TSS (NM_198025)	-84.0	NM_198025	226844.0	Mm.134053	NM_198025	ENSMUSG00000066595	Flvcr1	9630055N22Rik|FLVCR|Mfsd7b	feline leukemia virus subgroup C cellular receptor 1	protein-coding	9.5	15.5	4.0	2.5	15.5	16.0
Merged-chr8-85059340-2	chr8	85058808	85059808	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026791)	promoter-TSS (NM_026791)	-811.0	NM_026791	68628.0	Mm.374815	NM_026791	ENSMUSG00000008167	Fbxw9	1110017H11Rik|Fbw9	F-box and WD-40 domain protein 9	protein-coding	1.0	1.5	10.0	4.5	3.0	6.5
Merged-chr6-134983703-4	chr6	134983201	134984201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001109914, exon 2 of 2)	exon (NM_001109914, exon 2 of 2)	1700.0	NM_001109914	381823.0	Mm.296104	NM_001109914	ENSMUSG00000090698	Apold1	Gm1075	apolipoprotein L domain containing 1	protein-coding	6.0	6.0	13.0	1.5	12.0	3.5
Merged-chr4-134289029-4	chr4	134288529	134289529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1183.0	NM_146156	230809.0	Mm.22778	NM_146156	ENSMUSG00000050890	Pdik1l	BC027088|stk35l2	PDLIM1 interacting kinase 1 like	protein-coding	26.0	28.0	26.0	16.5	51.5	31.0
Merged-chr18-46742443-4	chr18	46741964	46742964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026217)	promoter-TSS (NM_026217)	588.0	NM_009681	11777.0	Mm.312536	NM_009681	ENSMUSG00000024480	Ap3s1	-	adaptor-related protein complex 3, sigma 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-92941491-3	chr6	92940991	92941991	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	909.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	2.0	0.0	1.5	3.0	8.5	4.0
Merged-chr7-30954095-2	chr7	30953595	30954595	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011680, intron 7 of 9)	intron (NM_011680, intron 7 of 9)	2708.0	NM_011680	22282.0	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	8.5	23.0	12.5	16.0	14.0	14.5
Merged-chr4-148088073-4	chr4	148087556	148088556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301281)	promoter-TSS (NM_001301281)	8.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167633459-2	chr2	167632959	167633959	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1454.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30749225-4	chr13	30748733	30749733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013674)	promoter-TSS (NM_013674)	0.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3145792-2	chr11	3145292	3146292	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 15 of 32)	intron (NM_030207, intron 15 of 32)	21771.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57077027-4	chr9	57076528	57077528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152107)	promoter-TSS (NR_152107)	652.0	NM_011378	20466.0	Mm.15755	NM_011378	ENSMUSG00000042557	Sin3a	AW553200|Sin3|mKIAA4126|mSin3A	transcriptional regulator, SIN3A (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5512522-4	chr11	5511977	5512977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER31B|LTR|ERV1	-8164.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	63.0	187.0	136.0	60.0	184.5	113.5
Merged-chr19-8803664-2	chr19	8803164	8804164	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001098237, exon 2 of 2)	exon (NM_001098237, exon 2 of 2)	1134.0	NM_001098237	75291.0	Mm.23423	NM_133759	ENSMUSG00000071661	Zbtb3	4930563M09Rik	zinc finger and BTB domain containing 3	protein-coding	0.0	5.5	3.0	0.0	2.0	3.5
Merged-chr18-80702652-4	chr18	80702143	80703143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 1 of 9)	intron (NM_198429, intron 1 of 9)	5530.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	9.0	23.0	14.0	7.5	16.5	19.5
Merged-chr1-135735516-4	chr1	135735019	135736019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007791, intron 1 of 5)	intron (NM_007791, intron 1 of 5)	6352.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91473974-1	chr6	91473474	91474474	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_133928)	promoter-TSS (NM_133928)	223.0	NM_028766	74122.0	Mm.38801	NM_028766	ENSMUSG00000030095	Tmem43	1200015A22Rik|LUMA	transmembrane protein 43	protein-coding	48.0	128.0	47.0	51.0	84.0	62.5
Merged-chr5-9101132-4	chr5	9100651	9101651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081029, intron 1 of 4)	CpG	414.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4546648-2	chr7	4546148	4547148	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360421, intron 1 of 8)	intron (NM_001360421, intron 1 of 8)	893.0	NM_001360421	53420.0	Mm.358663	NM_016908	ENSMUSG00000004961	Syt5	SytV	synaptotagmin V	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88668764-4	chr8	88668276	88669276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 4 of 12)	intron (NM_145857, intron 4 of 12)	21429.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	59.0	174.0	124.5	39.5	176.0	104.0
Merged-chr7-101363624-4	chr7	101363129	101364129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	-14493.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	83.0	149.0	127.5	52.5	185.5	98.5
Merged-chr9-22050285-2	chr9	22049785	22050785	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010487, intron 1 of 6)	MIR3|SINE|MIR	1738.0	NM_010487	15571.0	Mm.390167	NM_010487	ENSMUSG00000003410	Elavl3	2600009P04Rik|Huc|PLE21|mHuC	ELAV like RNA binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16817469-2	chr7	16816969	16817969	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173430)	promoter-TSS (NM_173430)	-737.0	NM_173430	243853.0	Mm.39703	NM_173430	ENSMUSG00000048920	Fkrp	A830029B19Rik|AI842067|AI847300|LGMD1I|MDC1C	fukutin related protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-83958512-4	chr12	83958006	83959006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7898.0	NM_023633	71952.0	Mm.251483	NM_023633	ENSMUSG00000046791	Riox1	2410016O06Rik|MAPJD|NO66	ribosomal oxygenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136053445-4	chr4	136052955	136053955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025919)	promoter-TSS (NM_025919)	-84.0	NM_025919	67025.0	Mm.276856	NM_025919	ENSMUSG00000059291	Rpl11	2010203J19Rik	ribosomal protein L11	protein-coding	29.5	72.0	38.0	40.5	45.0	28.5
Merged-chr2-165320635-4	chr2	165320121	165321121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080287, intron 1 of 20)	intron (NM_080287, intron 1 of 20)	205.0	NM_001302752	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-9902125-4	chr10	9901623	9902623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1083.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	0.0	2.5	5.0	0.0	0.0	1.0
Merged-chr4-126890063-4	chr4	126889568	126890568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001357201, exon 20 of 28)	exon (NM_001357201, exon 20 of 28)	77855.0	NM_001357201	67785.0	Mm.165401	NM_001114399	ENSMUSG00000042446	Zmym4	6330503C17Rik|AI480785|AW493829|CDIR|D630001M21|MYM|Zfp262|Znf262|mKIAA0425	zinc finger, MYM-type 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5798671-4	chr17	5798162	5799162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045081)	promoter-TSS (NR_045081)	5.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140116892-2	chr5	140116392	140117392	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359025, intron 14 of 17)	intron (NM_001359025, intron 14 of 17)	58026.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26497652-6	chr17	26497148	26498148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10824.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	52.5	123.0	48.0	54.5	104.0	47.5
Merged-chr8-105289576-4	chr8	105289081	105290081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166394)	promoter-TSS (NM_001166394)	-53.0	NM_028888	74356.0	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-14112376-4	chr16	14111859	14112859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081154, intron 26 of 26)	intron (NM_001081154, intron 26 of 26)	46915.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-105258777-4	chr14	105258272	105259272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190989)	promoter-TSS (NM_001190989)	99.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	43.5	129.0	82.5	38.5	87.5	63.0
Merged-chr10-88712583-4	chr10	88712086	88713086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18515.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133674189-4	chr4	133673675	133674675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1009.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	27.0	34.5	42.0	29.5	59.5	38.0
Merged-chr17-15499838-4	chr17	15499325	15500325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013684)	promoter-TSS (NM_013684)	-63.0	NM_013684	21374.0	Mm.244820	NM_013684	ENSMUSG00000014767	Tbp	GTF2D1|Gtf2d|SCA17|TFIID	TATA box binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32036406-4	chr17	32035896	32036896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028244, exon 1 of 16)	5' UTR (NM_028244, exon 1 of 16)	234.0	NM_028244	72462.0	Mm.102761	NM_028244	ENSMUSG00000058392	Rrp1b	2600005C20Rik|D030064A17|Kiaa0179|mKIAA0179	ribosomal RNA processing 1 homolog B (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94356451-2	chr10	94355951	94356951	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	Lx8|LINE|L1	44502.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21206603-2	chr5	21206103	21207103	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 3 of 26)	intron (NR_153365, intron 3 of 26)	20336.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	2.0	3.0	4.5	2.0	3.0	4.5
Merged-chr11-102425670-7	chr11	102425176	102426176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4646.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88767153-4	chr5	88766670	88767670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007832, intron 1 of 6)	intron (NM_007832, intron 1 of 6)	2157.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11322194-4	chr4	11321692	11322692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081201)	promoter-TSS (NM_001081201)	-61.0	NM_001081201	381510.0	Mm.331486	NM_001081201	ENSMUSG00000045205	Dpy19l4	Gm1023|Narg3	dpy-19-like 4 (C. elegans)	protein-coding	15.5	47.5	39.0	20.5	28.0	23.0
Merged-chr10-95564227-4	chr10	95563725	95564725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027722)	promoter-TSS (NM_027722)	-79.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-30864116-2	chr3	30863616	30864616	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286994, intron 1 of 3)	MTD|LTR|ERVL-MaLR	8166.0	NM_001286994	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130796135-4	chr4	130795636	130796636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	MIR|SINE|MIR	3599.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59439215-2	chr4	59438715	59439715	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163288)	promoter-TSS (NM_001163288)	-582.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74294205-2	chr17	74293705	74294705	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133771, intron 1 of 8)	intron (NM_133771, intron 1 of 8)	658.0	NM_133771	76890.0	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding	4.5	9.5	6.0	3.0	7.5	14.5
Merged-chr9-40324427-4	chr9	40323941	40324941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	-3118.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	34.0	111.5	75.0	36.0	86.0	80.0
Merged-chr7-99052606-4	chr7	99052100	99053100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 6 of 14)	L2a|LINE|L2	88544.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	6.5	42.0	44.5	31.0	47.5	57.0
Merged-chr11-58954590-4	chr11	58954079	58955079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_134309)	promoter-TSS (NR_134309)	-67.0	NR_134309	382522.0	Mm.377898	NR_134309	ENSMUSG00000080712	Hist3h2bb-ps	4930534G10Rik|4933432H21|B2Hist3h2bb|Hist3h2bb|R75370	histone cluster 3, H2bb, pseudogene	pseudo	127.0	306.5	229.5	95.5	177.0	163.5
Merged-chr14-56575570-4	chr14	56575065	56576065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145978)	promoter-TSS (NM_001145978)	-54.0	NM_001145978	328417.0	Mm.379357	NM_001145978	ENSMUSG00000054509	Parp4	Adprtl1|C030027K23Rik|E230037B21Rik|Gm743|PARPL|PH5P|VAULT3|VPARP|p193	poly (ADP-ribose) polymerase family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132358984-4	chr7	132358485	132359485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41757.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-21208428-3	chr12	21207936	21208936	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004364, intron 7 of 26)	intron (NM_001004364, intron 7 of 26)	77848.0	NM_008403	16413.0	Mm.273333	NM_008403	ENSMUSG00000062352	Itgb1bp1	AI449260|AU019480|Icap1	integrin beta 1 binding protein 1	protein-coding	2.0	6.5	5.0	0.0	0.5	0.0
Merged-chr3-65950431-4	chr3	65949928	65950928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019937, intron 5 of 10)	intron (NM_019937, intron 5 of 10)	7821.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	45.0	116.0	51.0	26.5	44.0	61.5
Merged-chr2-165885674-4	chr2	165885168	165886168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252584)	promoter-TSS (NM_001252584)	-830.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	11.5	61.0	29.5	22.5	73.0	32.5
Merged-chr16-95898093-4	chr16	95897587	95898587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040485, exon 2 of 4)	non-coding (NR_040485, exon 2 of 4)	626.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98268648-4	chr12	98268144	98269144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008152)	promoter-TSS (NM_008152)	9.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64400945-4	chr7	64400441	64401441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028626, intron 2 of 2)	intron (NM_028626, intron 2 of 2)	8319.0	NM_001355124	73724.0	Mm.10093	NM_028626	ENSMUSG00000033429	Mcee	1110007A04Rik	methylmalonyl CoA epimerase	protein-coding	0.0	0.0	3.0	0.0	0.5	8.5
Merged-chr12-70476958-4	chr12	70476490	70477490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037248, intron 2 of 4)	intron (NR_037248, intron 2 of 4)	23836.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111713179-4	chr12	111712664	111713664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027404)	promoter-TSS (NM_027404)	92.0	NM_027404	70369.0	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123050943-4	chr4	123050457	123051457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151450, intron 8 of 9)	intron (NR_151450, intron 8 of 9)	34364.0	NR_151450	66966.0	Mm.235030	NM_025873	ENSMUSG00000028653	Trit1	2310075G14Rik|AI314189|AI314635|AV099619|IPPT|IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116788202-4	chr4	116787681	116788681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146151, intron 4 of 10)	intron (NM_146151, intron 4 of 10)	19378.0	NM_026654	68276.0	Mm.30534	NM_026654	ENSMUSG00000028688	Toe1	4930584N22Rik|4933424D16Rik|AI413517	target of EGR1, member 1 (nuclear)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117867486-4	chr10	117866974	117867974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21500.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65108353-4	chr5	65107869	65108869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347355, intron 1 of 10)	intron (NM_001347355, intron 1 of 10)	801.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164492938-4	chr2	164492429	164493429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026797, exon 4 of 4)	3' UTR (NM_026797, exon 4 of 4)	-4596.0	NM_133779	78928.0	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding	8.5	40.5	46.5	27.5	66.5	79.5
Merged-chr10-91170756-4	chr10	91170259	91171259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001283048)	promoter-TSS (NM_001283048)	-209.0	NM_001283048	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-14346245-4	chr14	14345753	14346753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008369)	promoter-TSS (NM_008369)	-242.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	46.0	105.0	49.0	61.5	89.0	47.5
Merged-chr1-131072623-3	chr1	131072123	131073123	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	25220.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	3.5	15.0	10.5	17.5	59.5	21.0
Merged-chr6-42349869-4	chr6	42349361	42350361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011777)	promoter-TSS (NM_011777)	33.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34210189-4	chr10	34209677	34210677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2626.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116852497-4	chr11	116852018	116853018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011358, intron 1 of 2)	CpG	576.0	NM_011358	20382.0	Mm.21841	NM_011358	ENSMUSG00000034120	Srsf2	D11Wsu175e|MRF-1|Pr264|SC35|Sfrs10|Sfrs2	serine/arginine-rich splicing factor 2	protein-coding	42.5	118.5	83.5	35.0	92.5	74.5
Merged-chr7-45897430-3	chr7	45896935	45897935	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291064)	promoter-TSS (NM_001291064)	366.0	NM_144801	70209.0	Mm.163766	NM_144801	ENSMUSG00000002781	Tmem143	2310076O21Rik|AI481604	transmembrane protein 143	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91963734-4	chr2	91963267	91964267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138306)	promoter-TSS (NM_138306)	-204.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-30048408-3	chr6	30047940	30048940	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164226, intron 1 of 11)	CpG	452.0	NM_001164227	18181.0	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	8.0	28.5	31.5	12.5	34.5	35.0
Merged-chr9-7221646-4	chr9	7221162	7222162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37157.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3852522-4	chr19	3851964	3852964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271496, intron 1 of 11)	CpG	691.0	NR_073190	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80742399-4	chr10	80741898	80742898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007460)	promoter-TSS (NM_007460)	-123.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31233541-4	chr16	31233022	31234022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32284.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142394909-4	chr3	142394391	142395391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190854, intron 1 of 12)	intron (NM_001190854, intron 1 of 12)	805.0	NM_001190853	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	20.0	37.0	34.5	9.5	64.0	34.5
Merged-chr11-106084307-4	chr11	106083802	106084802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011947)	promoter-TSS (NM_011947)	-600.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-26362290-4	chr15	26361791	26362791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310774, intron 2 of 2)	intron (NM_001310774, intron 2 of 2)	53243.0	NM_001310774	211147.0	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120042960-4	chr6	120042450	120043450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4295.0	NM_001185021	232341.0	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	1.5	4.0	2.0	5.5	5.5	6.5
Merged-chr7-16781275-4	chr7	16780790	16781790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009201)	promoter-TSS (NM_009201)	-56.0	NM_009201	20514.0	Mm.1056	NM_009201	ENSMUSG00000001918	Slc1a5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC|Slc1a7	solute carrier family 1 (neutral amino acid transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33934915-4	chr16	33934408	33935408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	32130.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133213017-2	chr4	133212495	133213495	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008154)	promoter-TSS (NM_008154)	-459.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	0.0	1.0	6.0	3.0	4.5	3.5
Merged-chr3-88913931-4	chr3	88913424	88914424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144898)	promoter-TSS (NM_144898)	26.0	NM_144898	229524.0	Mm.440405	NM_144898	ENSMUSG00000068922	Msto1	BC008103|mst	misato 1, mitochondrial distribution and morphology regulator	protein-coding	6.5	18.5	19.0	3.0	27.0	18.0
Merged-chr16-22118261-2	chr16	22117761	22118761	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	45038.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126928049-2	chr8	126927549	126928549	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17872.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116227878-4	chr6	116227383	116228383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026585, intron 15 of 30)	intron (NM_026585, intron 15 of 30)	19850.0	NM_026585	28006.0	Mm.28524	NM_026585	ENSMUSG00000024104	Washc2	A130095H06|C530005J20Rik|D6Wsu116e|Fam21	WASH complex subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25358115-4	chr15	25357621	25358621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	55643.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76246806-4	chr15	76246324	76247324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023168)	promoter-TSS (NM_023168)	17.0	NM_023168	66168.0	Mm.41665	NM_023168	ENSMUSG00000022564	Grina	1110025J15Rik|Lag|Tmbim3	glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-103754815-4	chr5	103754310	103755310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080798, intron 1 of 19)	intron (NM_001080798, intron 1 of 19)	237.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71908976-5	chr6	71908426	71909426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009088)	promoter-TSS (NM_009088)	-127.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-47232344-4	chr13	47231826	47232826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 4 of 7)	intron (NM_146042, intron 4 of 7)	38323.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	70.5	207.0	117.0	70.5	207.5	90.5
Merged-chr4-141138620-4	chr4	141138116	141139116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277195, intron 1 of 3)	intron (NM_001277195, intron 1 of 3)	1180.0	NR_102344	213491.0	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127014540-4	chr7	127014028	127015028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080638)	promoter-TSS (NM_080638)	66.0	NM_080638	78388.0	Mm.228797	NM_080638	ENSMUSG00000030681	Mvp	2310009M24Rik|LRP|VAULT1	major vault protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-69556926-4	chr5	69556428	69557428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172711)	promoter-TSS (NM_172711)	4.0	NM_001310631	231279.0	Mm.21105	NM_172711	ENSMUSG00000029208	Guf1	4631409J12|AA407526|EF-4	GUF1 homolog, GTPase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-61409856-4	chr3	61409366	61410366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45359.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106675485-4	chr11	106674946	106675946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 12 of 14)	intron (NM_001305158, intron 12 of 14)	39835.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	36.0	109.5	45.0	38.0	100.0	48.0
Merged-chr18-62720157-4	chr18	62719647	62720647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168423, intron 1 of 4)	intron (NM_001168423, intron 1 of 4)	21240.0	NM_001168423	100038417.0	Mm.387557	NM_001168423	ENSMUSG00000073551	Spink13	Gm10534|Spink5l3	serine peptidase inhibitor, Kazal type 13	protein-coding	21.5	20.5	21.5	8.0	17.0	16.0
Merged-chr4-132611552-4	chr4	132611060	132612060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27486.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	9.0	23.5	22.5	8.0	7.5	11.5
Merged-chr1-192138161-4	chr1	192137664	192138664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144814)	promoter-TSS (NM_144814)	-124.0	NM_001290282	214742.0	Mm.207457	NM_144814	ENSMUSG00000037395	Rcor3	4921514E24Rik|C730034D20Rik|E130101E15Rik	REST corepressor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81856405-4	chr7	81855906	81856906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-2595.0	NR_111910	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-21417221-3	chr12	21416717	21417717	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011739, exon 1 of 5)	5' UTR (NM_011739, exon 1 of 5)	219.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	38.5	113.0	117.0	44.5	69.5	59.0
Merged-chr14-66231087-4	chr14	66230569	66231569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-17245.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44544970-2	chr19	44544470	44545470	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033343, intron 1 of 25)	intron (NM_001033343, intron 1 of 25)	878.0	NM_001033343	240667.0	Mm.329873	NM_001033343	ENSMUSG00000051984	Sec31b	Gm341|Sec31l2	Sec31 homolog B (S. cerevisiae)	protein-coding	0.0	0.0	0.0	4.0	0.0	0.0
Merged-chr13-81783195-4	chr13	81782719	81783719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007684)	promoter-TSS (NM_007684)	-28.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31056707-10	chr3	31056308	31057308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	17842.0	NR_105975	102465610.0		NR_105975	ENSMUSG00000098890	Mir7008	Gm27752|mmu-mir-7008	microRNA 7008	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-115820650-1	chr3	115820150	115821150	+	1000.0	f1_balb.idr	Intergenic	Intergenic	67409.0	NR_027894	68161.0	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	0.0	0.0	1.0	0.0	5.5	3.5
Merged-chr10-58450404-2	chr10	58449904	58450904	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011240, intron 1 of 28)	B3|SINE|B2	3552.0	NM_011240	19386.0	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-21806652-4	chr3	21806155	21807155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-269997.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-57282181-3	chr12	57281667	57282667	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164370, intron 1 of 9)	intron (NM_001164370, intron 1 of 9)	51742.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-14657587-4	chr18	14657092	14658092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009280, intron 3 of 10)	intron (NM_009280, intron 3 of 10)	25322.0	NM_001161369	268996.0	Mm.31761	NM_009280	ENSMUSG00000037013	Ss18	D130059H17|Ssxt|Syt	SS18, nBAF chromatin remodeling complex subunit	protein-coding	151.5	331.0	277.0	90.5	287.5	204.0
Merged-chr10-118085464-5	chr10	118084943	118085943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56344.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	343.5	707.0	454.5	311.5	670.5	439.5
Merged-chr18-77797303-4	chr18	77796814	77797814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152167)	promoter-TSS (NR_152167)	-924.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99339890-4	chr5	99339356	99340356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-86929.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-59600968-4	chr16	59600479	59601479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-35966.0	NR_040564	75145.0	Mm.399348	NR_040564		4930547E14Rik	-	RIKEN cDNA 4930547E14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43768855-2	chr7	43768355	43769355	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027097)	promoter-TSS (NM_027097)	-245.0	NM_027097	69511.0	Mm.20163	NM_027097	ENSMUSG00000044430	Klk12	2310008B01Rik|AI324852|KLK-L5	kallikrein related-peptidase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-137854083-4	chr3	137853560	137854560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10427.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	0.0	5.0	5.0	0.0	5.0	4.5
Merged-chr13-52583078-4	chr13	52582576	52583576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198977)	promoter-TSS (NM_001198977)	-361.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-21949998-4	chr6	21949516	21950516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311061, intron 1 of 11)	CpG	401.0	NM_023626	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166699566-7	chr2	166699069	166700069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	14263.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36262028-4	chr17	36261514	36262514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357889)	TTS (NM_001357889)	-4168.0	NM_026308	67676.0	Mm.27131	NM_026308	ENSMUSG00000024446	Rpp21	0610037N01Rik	ribonuclease P 21 subunit	protein-coding	4.0	28.0	11.0	5.0	11.5	5.0
Merged-chr13-18793449-2	chr13	18792949	18793949	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 6 of 28)	intron (NM_172120, intron 6 of 28)	76157.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	7.0	6.5	0.0	2.5	12.5	6.0
Merged-chr12-87147127-4	chr12	87146634	87147634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010363)	promoter-TSS (NM_010363)	-31.0	NM_001252555	14874.0	Mm.29652	NM_010363	ENSMUSG00000021033	Gstz1	MAAI	glutathione transferase zeta 1 (maleylacetoacetate isomerase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153239213-4	chr2	153238720	153239720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018807, intron 1 of 2)	intron (NM_018807, intron 1 of 2)	2138.0	NM_018807	54711.0	Mm.103199	NM_018807	ENSMUSG00000051413	Plagl2	AU018672|AW552839|mKIAA0198	pleiomorphic adenoma gene-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118742582-4	chr7	118742063	118743063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027815, intron 1 of 30)	intron (NM_027815, intron 1 of 30)	2292.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	68.5	126.5	123.5	38.0	88.0	90.5
Merged-chr14-20707516-4	chr14	20706988	20707988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252081)	promoter-TSS (NM_001252081)	-64.0	NM_001252081	268721.0	Mm.275082	NM_027996	ENSMUSG00000021819	Zswim8	2310021P13Rik|4832404P21Rik|Kiaa0913|mKIAA0913	zinc finger SWIM-type containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59593701-2	chr4	59593201	59594201	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301367, intron 4 of 11)	intron (NM_001301367, intron 4 of 11)	12138.0	NM_024255	72479.0	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59441449-4	chr4	59440885	59441885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-2752.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	6.0	31.0	14.0	11.0	13.0	8.5
Merged-chr1-128747495-3	chr1	128746952	128747952	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-155153.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	2.5	8.5	10.5	13.5	17.0	38.0
Merged-chr9-99074656-4	chr9	99074159	99075159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 8 of 23)	B4A|SINE|B4	-38969.0	NM_001080776	382097.0	Mm.293727	NM_001080776	ENSMUSG00000044860	Gm1123	AV052824|CLSP	predicted gene 1123	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-10012501-4	chr3	10012008	10013008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001272098)	promoter-TSS (NM_001272098)	-77.0	NM_001272097	16592.0	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	16.0	7.0	3.0	12.0	2.5	4.5
Merged-chr2-122630630-4	chr2	122630144	122631144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033256)	promoter-TSS (NM_001033256)	19.0	NM_001033256	214616.0	Mm.271306	NM_001033256		Spata5l1	AV141009|C130039A10Rik	spermatogenesis associated 5-like 1	protein-coding	32.5	107.5	58.0	29.0	98.5	49.0
Merged-chr1-95528905-4	chr1	95528402	95529402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	138692.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78533472-4	chr9	78532988	78533988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51764.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99459365-4	chr5	99458857	99459857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-206430.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-3397764-2	chr6	3397302	3398302	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010156, intron 1 of 1)	intron (NM_010156, intron 1 of 1)	1769.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	4.0	9.5	12.5	11.5	37.5	13.5
Merged-chr5-3928339-5	chr5	3927908	3928908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_194462, exon 1 of 48)	5' UTR (NM_194462, exon 1 of 48)	222.0	NM_194462	100986.0	Mm.46044	NM_194462	ENSMUSG00000040407	Akap9	5730481H23Rik|AKAP-9|AKAP450|AW545847|C79026|G1-448-15|PRKA9|mKIAA0803|mei2-5|repro12	A kinase (PRKA) anchor protein (yotiao) 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89294819-4	chr6	89294326	89295326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9101.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50842369-2	chr14	50841864	50842864	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009351, intron 28 of 54)	B3|SINE|B2	28190.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	41.0	71.0	83.5	20.5	71.0	55.0
Merged-chr9-77912073-4	chr9	77911559	77912559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5306.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	46.5	77.5	74.0	25.0	64.5	97.0
Merged-chr16-18812306-4	chr16	18811809	18812809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009862)	promoter-TSS (NM_009862)	15.0	NM_011672	22230.0	Mm.237594	NM_011672	ENSMUSG00000005262	Ufd1	Ufd1l	ubiquitin recognition factor in ER-associated degradation 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36771436-3	chr18	36770945	36771945	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008214, intron 5 of 12)	intron (NM_008214, intron 5 of 12)	-5231.0	NM_173383	213236.0	Mm.234464	NM_173383	ENSMUSG00000044595	Dnd1	BC034897|RBMS4|Ter	DND microRNA-mediated repression inhibitor 1	protein-coding	8.0	6.5	29.0	24.5	21.5	39.0
Merged-chr11-120582155-4	chr11	120581650	120582650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133796)	promoter-TSS (NM_133796)	-530.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55525300-4	chr1	55524815	55525815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	Lx9|LINE|L1	119369.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	12.0	35.5	42.0	10.5	34.0	47.5
Merged-chr14-31481721-2	chr14	31481221	31482221	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359849, intron 4 of 4)	L1_Mur3|LINE|L1	13037.0	NM_001359850	67011.0	Mm.291731	NM_025907	ENSMUSG00000021891	Mettl6	1600013P15Rik|AI467521|AU020711	methyltransferase like 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25688061-6	chr7	25687479	25688479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011577, exon 1 of 7)	exon (NM_011577, exon 1 of 7)	977.0	NM_011577	21803.0	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146450591-4	chr3	146450092	146451092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001293672, exon 1 of 7)	exon (NM_001293672, exon 1 of 7)	125.0	NM_001293672	74245.0	Mm.45396	NM_028836	ENSMUSG00000028189	Ctbs	2210401K11Rik|CTB	chitobiase, di-N-acetyl-	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65698533-4	chr18	65698031	65699031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177028, intron 1 of 14)	intron (NM_177028, intron 1 of 14)	263.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	83.0	134.5	96.0	104.0	166.0	132.5
Merged-chr2-170343331-4	chr2	170342843	170343843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13018.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	7.5	8.0	9.0	7.5	8.0	9.0
Merged-chr16-18687102-4	chr16	18686603	18687603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57165.0	NM_213614	18951.0	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66611831-4	chr9	66611317	66612317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18702.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38300903-4	chr15	38300418	38301418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289471)	promoter-TSS (NM_001289471)	-207.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156857506-4	chr2	156857023	156858023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015591, intron 1 of 2)	intron (NR_015591, intron 1 of 2)	5422.0	NR_015591	74487.0	Mm.490465	NR_015591	ENSMUSG00000085741	5430405H02Rik	2610307N17Rik	RIKEN cDNA 5430405H02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101144921-4	chr15	101144425	101145425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001277259, exon 12 of 12)	3' UTR (NM_001277259, exon 12 of 12)	16403.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	58.5	158.5	115.5	67.5	171.0	124.0
Merged-chr9-75434284-4	chr9	75433803	75434803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7221.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	31.0	71.0	43.0	31.0	83.0	41.5
Merged-chr2-103606357-4	chr2	103605840	103606840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	40030.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-19416249-6	chr13	19415726	19416726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-20413.0	NM_001347485	76205.0	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	11.0	19.0	26.5	21.5	23.5	16.0
Merged-chr9-65562323-4	chr9	65561812	65562812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 3 of 5)	intron (NM_153119, intron 3 of 5)	17775.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	21.0	36.0	38.5	19.5	65.5	30.5
Merged-chr11-116027984-4	chr11	116027473	116028473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-2343.0	NM_001286006	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-69807667-2	chr14	69807167	69808167	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2122.0	NM_153514	246710.0	Mm.102367	NM_153514	ENSMUSG00000022075	Rhobtb2	Dbc2|E130206H14Rik|mKIAA0717	Rho-related BTB domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94179068-4	chr8	94178555	94179555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013602)	promoter-TSS (NM_013602)	-34.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80054499-4	chr12	80053979	80054979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58534.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117845311-4	chr10	117844823	117845823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	651.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33918971-4	chr2	33918472	33919472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31026.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166826976-4	chr2	166826489	166827489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085495, intron 2 of 38)	intron (NM_001085495, intron 2 of 38)	21408.0	NM_001085495	99371.0	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95834527-4	chr11	95834022	95835022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025659, intron 3 of 7)	intron (NM_025659, intron 3 of 7)	-7773.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-64039968-2	chr3	64039468	64040468	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_1-I_MM-int|LTR|ERVK	-41674.0	NM_019918	56544.0	Mm.57069	NM_019918	ENSMUSG00000027824	Vmn2r1	Casrl1|EG56544|V2r83	vomeronasal 2, receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-66853413-4	chr10	66852926	66853926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66958.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53116055-4	chr4	53115548	53116548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	43847.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	1.0	9.0	6.0	8.0	7.5	10.5
Merged-chr4-122924024-4	chr4	122923511	122924511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37177.0	NM_029662	76574.0	Mm.331842	NM_029662	ENSMUSG00000028655	Mfsd2a	1700018O18Rik|Mfsd2|NLS1	major facilitator superfamily domain containing 2A	protein-coding	4.5	20.5	2.0	0.0	19.0	22.5
Merged-chr1-39847256-4	chr1	39846760	39847760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040465)	promoter-TSS (NR_040465)	70.0	NR_040465	73426.0	Mm.396239	NR_040465	ENSMUSG00000101634	1700066B17Rik	-	RIKEN cDNA 1700066B17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-38011562-4	chr19	38011057	38012057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 3 of 53)	intron (NM_001302140, intron 3 of 53)	32020.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	91.5	133.5	110.5	67.5	168.5	180.5
Merged-chr9-70257670-4	chr9	70257165	70258165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	50315.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32389675-4	chr19	32389168	32390168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033198, intron 1 of 1)	CpG-7452	452.0	NR_033198	67188.0	Mm.391160	NR_033198	ENSMUSG00000097787	2700046G09Rik	-	RIKEN cDNA 2700046G09 gene	ncRNA	47.0	46.5	73.0	20.0	40.5	47.5
Merged-chr13-42049238-1	chr13	42048738	42049738	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-2783.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	1.0	2.5	5.0	3.0	0.0	1.5
Merged-chr4-112256202-3	chr4	112255705	112256705	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177578, intron 4 of 7)	MTD|LTR|ERVL-MaLR	23960.0	NM_001102474	195564.0	Mm.259652	NM_177578	ENSMUSG00000070868	Skint3	A430090E18Rik|Skint-3	selection and upkeep of intraepithelial T cells 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-37332356-4	chr3	37331868	37332868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16285.0	NM_008006	14173.0	Mm.473689	NM_008006	ENSMUSG00000037225	Fgf2	Fgf-2|Fgfb|bFGF	fibroblast growth factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62037936-4	chr15	62037424	62038424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003368)	promoter-TSS (NR_003368)	-62.0	NR_132747	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149518779-2	chr4	149518279	149519279	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023465, intron 1 of 4)	intron (NM_023465, intron 1 of 4)	538.0	NM_023465	67087.0	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61211667-4	chr18	61211200	61212200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007885)	promoter-TSS (NM_007885)	-104.0	NM_007885	13521.0	Mm.24803	NM_007885	ENSMUSG00000034320	Slc26a2	Dtd|ST-OB	solute carrier family 26 (sulfate transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35201114-4	chr2	35200611	35201611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026697)	promoter-TSS (NM_026697)	9.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88271691-4	chr7	88271203	88272203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6382.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95820385-2	chr15	95819885	95820885	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	RMER17B|LTR|ERVK	9687.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-41153075-4	chr9	41152570	41153570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	4992.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	25.5	63.0	45.0	16.5	41.5	22.0
Merged-chr13-56014206-2	chr13	56013706	56014706	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	121344.0	NM_012015	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0.0	7.5	10.5	0.0	7.5	10.5
Merged-chr17-27897255-3	chr17	27896775	27897775	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001080769, exon 21 of 21)	3' UTR (NM_001080769, exon 21 of 21)	11967.0	NM_026836	68776.0	Mm.267998	NM_026836	ENSMUSG00000024218	Taf11	1110038O14Rik|AI115401|AL024207|AW552398|PRO214|TAF2I|TAFII28	TATA-box binding protein associated factor 11	protein-coding	49.5	208.0	90.0	5.5	16.0	12.5
Merged-chr8-41073977-3	chr8	41073483	41074483	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 3 of 13)	intron (NM_001005863, intron 3 of 13)	-19187.0	NM_001005864	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	1.0	3.0	4.0	2.0	1.0	0.5
Merged-chr7-121072198-2	chr7	121071698	121072698	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030691, intron 1 of 5)	intron (NM_030691, intron 1 of 5)	2332.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88607065-4	chr3	88606550	88607550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9157.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	3.0	13.5	5.5	10.0	35.0	23.0
Merged-chr2-25328506-2	chr2	25328006	25329006	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027448, exon 2 of 2)	non-coding (NR_027448, exon 2 of 2)	4065.0	NR_027448	100272219.0	Mm.382103	NR_027448	ENSMUSG00000097345	AA543186	-	expressed sequence AA543186	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101448405-4	chr11	101447897	101448897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027320)	promoter-TSS (NM_027320)	-15.0	NM_027320	70110.0	Mm.45558	NM_027320	ENSMUSG00000010358	Ifi35	2010008K16Rik|AW986054|IFP35|ifi-35	interferon-induced protein 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55605427-1	chr14	55604927	55605927	+	1000.0	f1_balb.idr	intron (NM_001159418, intron 2 of 8)	B2_Mm2|SINE|B2	848.0	NM_001159418	16391.0	Mm.2032	NM_008394	ENSMUSG00000002325	Irf9	Irf-9|Isgf3g|p48	interferon regulatory factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32880682-4	chr18	32880187	32881187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105779)	promoter-TSS (NR_105779)	-14.0	NR_105779	102465186.0		NR_105779	ENSMUSG00000098252	Mir6361	Gm27612|mmu-mir-6361	microRNA 6361	ncRNA	2.0	0.5	1.5	0.5	8.0	4.5
Merged-chr1-165639741-4	chr1	165639235	165640235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5194.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-9009775-2	chr15	9009275	9010275	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198024, intron 6 of 13)	RLTR20B5_MM|LTR|ERVK	41826.0	NM_198024	223332.0	Mm.321371	NM_198024	ENSMUSG00000048424	Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding	0.0	0.0	0.0	9.0	0.0	1.0
Merged-chr7-68692907-4	chr7	68692416	68693416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56322.0	NM_001042592	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	4.5	11.5	4.5	4.5	11.5	5.0
Merged-chr14-20393635-4	chr14	20393152	20394152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155747)	promoter-TSS (NR_155747)	-18.0	NM_025440	66242.0	Mm.23747	NM_025440	ENSMUSG00000049960	Mrps16	1500011E11Rik|Mprs16|S16mt	mitochondrial ribosomal protein S16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44482885-4	chr13	44482396	44483396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	43169.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	7.5	11.0	8.5	0.0	5.0	11.0
Merged-chr10-53596846-4	chr10	53596342	53597342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025541)	promoter-TSS (NM_025541)	-119.0	NM_025541	66403.0	Mm.272989	NM_025541	ENSMUSG00000019857	Asf1a	2310079C17Rik|C79052	anti-silencing function 1A histone chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120951025-4	chr11	120950535	120951535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038654, intron 1 of 4)	CpG	1968.0	NM_001038654	80879.0	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145306881-4	chr6	145306384	145307384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56332.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	184.0	612.5	482.0	260.5	565.5	357.0
Merged-chr4-141078377-4	chr4	141077893	141078893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025383)	promoter-TSS (NM_025383)	-36.0	NM_025383	66147.0	Mm.21187	NM_025383	ENSMUSG00000028923	Necap2	1110005F07Rik|AA409105|C78898|NECAP-2	NECAP endocytosis associated 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3997198-2	chr19	3996698	3997698	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001320, intron 3 of 7)	intron (NM_001001320, intron 3 of 7)	-3382.0	NM_025529	66387.0	Mm.259222	NM_025529	ENSMUSG00000110949	Nudt8	2310039H17Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27356085-4	chr7	27355584	27356584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138676)	promoter-TSS (NM_138676)	-76.0	NM_138676	192192.0	Mm.21297	NM_138676	ENSMUSG00000089832	Shkbp1	B930062H15Rik|Sb1	Sh3kbp1 binding protein 1	protein-coding	109.0	342.0	226.5	115.0	312.0	225.5
Merged-chr4-101694706-4	chr4	101694187	101695187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22720.0	NM_001122899	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57571789-4	chr6	57571323	57572323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-9169.0	NM_025992	67138.0	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127020258-4	chr3	127019688	127020688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 14 of 47)	intron (NM_001327938, intron 14 of 47)	-21736.0	NM_178655	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.0	0.0	2.5	0.5	0.0	0.0
Merged-chr18-4055718-4	chr18	4055232	4056232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS4A|LTR|ERV1	-110100.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118868059-4	chr10	118867540	118868540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014390, intron 2 of 2)	CpG	863.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-113513235-2	chr7	113512735	113513735	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027379)	promoter-TSS (NM_027379)	-599.0	NM_001285831	67420.0	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52078738-4	chr13	52078226	52079226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-18015.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36311093-2	chr1	36310593	36311593	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290727, intron 1 of 5)	MIRb|SINE|MIR	3360.0	NM_001172205	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102354649-4	chr12	102354147	102355147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 4 of 9)	intron (NM_177620, intron 4 of 9)	71006.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	63.5	117.0	69.0	20.5	37.0	47.0
Merged-chr12-51678525-4	chr12	51677996	51678996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172098, intron 1 of 15)	MTD|LTR|ERVL-MaLR	-12470.0	NM_001329699	11782.0	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-104442403-6	chr11	104441925	104442925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081045)	promoter-TSS (NM_001081045)	-134.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61407977-4	chr11	61407507	61408507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-29932.0	NM_026183	67473.0	Mm.100741	NM_026183	ENSMUSG00000010122	Slc47a1	1300013J15Rik|AI036982|MATE1|mMATE1	solute carrier family 47, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-42103127-4	chr13	42102614	42103614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	51093.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84350454-4	chr1	84349949	84350949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65804.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-82867133-4	chr7	82866648	82867648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175366)	promoter-TSS (NM_175366)	-185.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155066987-4	chr4	155066479	155067479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042407)	promoter-TSS (NM_001042407)	-51.0	NM_001042407	668173.0	Mm.133114	NM_001042407	ENSMUSG00000029047	Pex10	AV128229|Gm142	peroxisomal biogenesis factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-34673854-4	chr14	34673363	34674363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301330)	promoter-TSS (NM_001301330)	-65.0	NM_001004436	218914.0	Mm.27957	NM_001004436	ENSMUSG00000041408	Wapl	A530089A20Rik|BC037674|DIF-2|FOE|Wapal	WAPL cohesin release factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29380745-4	chr19	29380240	29381240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 4 of 6)	intron (NM_021893, intron 4 of 6)	13302.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111854370-4	chr8	111853858	111854858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011801)	promoter-TSS (NM_011801)	-48.0	NM_011801	23837.0	Mm.279437	NM_011801	ENSMUSG00000031954	Cfdp1	AA408409|Bcnt|Bucentaur|Cfdp|cp27	craniofacial development protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59203145-4	chr2	59202662	59203662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	42312.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34927715-4	chr18	34927222	34928222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144866, intron 2 of 10)	PB1D7|SINE|Alu	4281.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-145653461-4	chr3	145652971	145653971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3486.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-95292819-3	chr12	95292315	95293315	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-399411.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42277771-4	chr10	42277267	42278267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-1005	-1025.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166639238-4	chr2	166638747	166639747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 3 of 39)	intron (NM_177782, intron 3 of 39)	74585.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170953405-4	chr1	170952889	170953889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22682.0	NM_010187	14130.0	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45006055-4	chr13	45005533	45006533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3937.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	6.0	2.0	11.0	12.0	7.5	21.0
Merged-chr4-44013086-4	chr4	44012601	44013601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080384, intron 2 of 5)	CpG	451.0	NM_001290470	12757.0	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36760235-4	chr18	36759711	36760711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026464)	promoter-TSS (NM_026464)	-11.0	NM_026464	67936.0	Mm.271719	NM_026464	ENSMUSG00000042660	Wdr55	2410080P20Rik|C80692	WD repeat domain 55	protein-coding	1.0	17.5	14.0	2.0	11.5	6.0
Merged-chr19-29367390-4	chr19	29366902	29367902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021893)	promoter-TSS (NM_021893)	-36.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107724392-4	chr9	107723896	107724896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13921.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-17903247-4	chr14	17902750	17903750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-78394.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71235337-4	chr6	71234822	71235822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009762, intron 4 of 8)	intron (NM_009762, intron 4 of 8)	26959.0	NM_001160127	12180.0	Mm.234274	NM_009762	ENSMUSG00000055027	Smyd1	4632404M21Rik|Bop|C78565|Zmynd18	SET and MYND domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-68058827-4	chr15	68058314	68059314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	200042.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-67061087-4	chr13	67060603	67061603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166218)	promoter-TSS (NM_001166218)	67.0	NM_001166218	78251.0	Mm.297247	NM_001166218	ENSMUSG00000090641	Zfp712	4921504N20Rik|mszf31|mszf89	zinc finger protein 712	protein-coding	30.0	53.0	73.0	23.0	44.5	41.5
Merged-chr8-35708022-4	chr8	35707521	35708521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	118538.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	3.5	18.5	12.5	13.0	9.5	8.0
Merged-chr9-37255325-2	chr9	37254825	37255825	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_020258, exon 1 of 18)	exon (NM_020258, exon 1 of 18)	413.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59254606-4	chr4	59254076	59255076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5475.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	71.0	118.0	118.0	54.5	154.5	102.0
Merged-chr1-60937506-4	chr1	60937006	60938006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR1d|LTR|Gypsy	28481.0	NM_001281976	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117891766-4	chr5	117891291	117892291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 2 of 27)	intron (NM_008712, intron 2 of 27)	24952.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	6.5	6.5	5.0	18.0	12.5	21.0
Merged-chr10-63336818-2	chr10	63336318	63337318	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159589, intron 1 of 7)	intron (NM_001159589, intron 1 of 7)	2217.0	NM_019812	93759.0	Mm.351459	NM_019812	ENSMUSG00000020063	Sirt1	AA673258|SIR2L1|Sir2|Sir2a|Sir2alpha	sirtuin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21527375-2	chr9	21526875	21527875	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198794, intron 1 of 6)	B2_Mm1t|SINE|B2	1198.0	NM_206536	382062.0	Mm.325205	NM_206536	ENSMUSG00000057191	AB124611	Gm1706	cDNA sequence AB124611	protein-coding	6.5	54.5	39.0	6.5	58.0	39.0
Merged-chr19-5952567-2	chr19	5952067	5953067	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 7 of 17)	intron (NM_001164057, intron 7 of 17)	11639.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71273234-4	chr8	71272751	71273751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163042)	promoter-TSS (NM_001163042)	537.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	24.0	52.0	25.0	15.5	38.0	41.5
Merged-chr7-27179020-4	chr7	27178492	27179492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029391)	promoter-TSS (NM_029391)	-109.0	NM_029391	19342.0	Mm.482114	NM_029391	ENSMUSG00000053291	Rab4b	1500031G17Rik	RAB4B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73287804-4	chr12	73287305	73288305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037717, intron 1 of 15)	intron (NM_001037717, intron 1 of 15)	957.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	106.5	217.0	130.5	97.0	313.0	170.5
Merged-chr8-95008173-2	chr8	95007673	95008673	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018882, intron 9 of 13)	intron (NM_018882, intron 9 of 13)	-9519.0	NM_173036	54672.0	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75702019-4	chr2	75701520	75702520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132727, intron 1 of 1)	intron (NR_132727, intron 1 of 1)	2643.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88407020-4	chr4	88406533	88407533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081184, intron 41 of 43)	intron (NM_001081184, intron 41 of 43)	31893.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	4.0	2.5	4.0	3.0	8.5	1.0
Merged-chr13-112440097-4	chr13	112439624	112440624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23946.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	19.0	11.0	4.0	4.5	3.0	2.0
Merged-chr11-23699902-4	chr11	23699399	23700399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033654, intron 4 of 17)	intron (NM_001033654, intron 4 of 17)	33923.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-73293863-4	chr8	73293357	73294357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010687, intron 1 of 14)	MTD|LTR|ERVL-MaLR	59683.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79253503-4	chr2	79253006	79254006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1920.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-49074947-3	chr10	49074423	49075423	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	713014.0	NM_001358866	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	0.0	15.5	8.0	7.0	35.5	15.0
Merged-chr5-148928810-4	chr5	148928320	148929320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153572)	promoter-TSS (NM_153572)	-173.0	NM_153572	231912.0	Mm.397405	NM_153572	ENSMUSG00000041298	Katnal1	-	katanin p60 subunit A-like 1	protein-coding	7.0	29.0	13.5	13.5	18.5	24.0
Merged-chr6-72389697-4	chr6	72389205	72390205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016794, intron 1 of 2)	intron (NM_016794, intron 1 of 2)	962.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60670793-4	chr13	60670306	60671306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	68595.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	154.0	265.5	232.5	138.5	268.5	222.5
Merged-chr17-57339754-4	chr17	57339238	57340238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18948.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.0	0.0	1.0	2.5	2.5	0.0
Merged-chr18-84952095-4	chr18	84951600	84952600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025969)	promoter-TSS (NM_025969)	-576.0	NM_025969	67105.0	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	translocase of inner mitochondrial membrane 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71250881-4	chr17	71250382	71251382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46228.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35885356-4	chr12	35884840	35885840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40281.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	17.0	3.5	5.0	3.5	3.5	4.5
Merged-chr1-166003437-4	chr1	166002938	166003938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011137)	promoter-TSS (NM_011137)	-804.0	NM_198932	18986.0	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143489395-2	chr5	143488895	143489895	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 8 of 14)	intron (NM_144915, intron 8 of 14)	24902.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47276958-4	chr14	47276468	47277468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172598)	promoter-TSS (NM_172598)	-111.0	NM_172598	218973.0	Mm.265615	NM_172598	ENSMUSG00000037572	Wdhd1	A630092E18|AND-1|D630024B06Rik	WD repeat and HMG-box DNA binding protein 1	protein-coding	3.0	2.5	7.5	7.0	18.0	17.0
Merged-chr12-31499785-7	chr12	31499243	31500243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134048)	promoter-TSS (NM_134048)	-127.0	NM_001253848	104836.0	Mm.273270	NM_134048	ENSMUSG00000020659	Cbll1	AI467391|Hakai|c-Cbl-like	Casitas B-lineage lymphoma-like 1	protein-coding	22.0	23.5	53.5	19.0	29.5	22.0
Merged-chr13-66933056-7	chr13	66932533	66933533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025547)	promoter-TSS (NM_025547)	39.0	NM_025547	66410.0	Mm.347939	NM_025547	ENSMUSG00000021519	Mterf3	2410017I18Rik|Mterfd1	mitochondrial transcription termination factor 3	protein-coding	31.0	160.0	134.5	33.5	172.0	151.5
Merged-chr11-109363526-4	chr11	109363064	109364064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038097)	promoter-TSS (NR_038097)	90.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	116.0	206.0	175.5	107.0	229.0	192.5
Merged-chr17-70963760-4	chr17	70963281	70964281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	26735.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35553373-4	chr18	35552870	35553870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038073)	promoter-TSS (NR_038073)	-40.0	NR_038073	100503380.0	Mm.482118	NR_038073	ENSMUSG00000097769	Snhg4	Gm17457	small nucleolar RNA host gene 4	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91398236-2	chr1	91397736	91398736	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023343, intron 1 of 11)	CpG	587.0	NM_023343	67444.0	Mm.337240	NM_023343	ENSMUSG00000026309	Ilkap	0710007A14Rik|1600009O09Rik|PP2C-DELTA	integrin-linked kinase-associated serine/threonine phosphatase 2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96104422-4	chr3	96103892	96104892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025614)	promoter-TSS (NM_001025614)	-135.0	NM_001025613	229603.0	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	0.0	6.0	2.5	0.0	2.0	0.5
Merged-chr2-5064056-4	chr2	5063574	5064574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181848)	promoter-TSS (NM_181848)	43.0	NM_181848	71648.0	Mm.116942	NM_181848	ENSMUSG00000026672	Optn	4930441O07Rik|FIP2|HYPL|NRP	optineurin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-122122316-4	chr9	122121803	122122803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357776, intron 1 of 5)	intron (NM_001357776, intron 1 of 5)	4844.0	NM_001357776	20623.0	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28311128-2	chr7	28310628	28311628	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025616, intron 1 of 10)	intron (NM_025616, intron 1 of 10)	918.0	NM_025616	66525.0	Mm.167913	NM_025616	ENSMUSG00000003438	Timm50	2810403L02Rik|AU015082|TIM50L	translocase of inner mitochondrial membrane 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-32736874-4	chr3	32736407	32737407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029017)	promoter-TSS (NM_029017)	-152.0	NM_029017	74600.0	Mm.288960	NM_029017	ENSMUSG00000037531	Mrpl47	4833424P18Rik|CGI-204|Gm9859|L47mt|MRP-L47|MTF/L47|NCM1	mitochondrial ribosomal protein L47	protein-coding	4.5	0.0	2.5	4.5	0.0	2.5
Merged-chr11-51858391-1	chr11	51857891	51858891	+	1000.0	f0_balb.idr	promoter-TSS (NM_199299)	promoter-TSS (NM_199299)	-761.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-77265256-4	chr5	77264759	77265759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011263)	promoter-TSS (NM_011263)	-235.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95693852-2	chr16	95693352	95694352	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8555.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92648950-4	chr1	92648448	92649448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153114)	promoter-TSS (NM_153114)	-107.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97439602-2	chr6	97439102	97440102	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	19684.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97482080-4	chr6	97481568	97482568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	MIRb|SINE|MIR	5752.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	83.0	170.0	127.0	59.0	176.0	100.5
Merged-chr17-56476531-4	chr17	56476028	56477028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011218)	promoter-TSS (NM_011218)	-48.0	NM_011218	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-68672054-4	chr14	68671534	68672534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16192.0	NM_183366	13522.0	Mm.117450	NM_010082	ENSMUSG00000014725	Adam28	C130072N01Rik|D430033C21Rik|Dtgn1|MDC-L|MDCL|TECADAM|eMDCII	a disintegrin and metallopeptidase domain 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113490165-2	chr13	113489665	113490665	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 1 of 6)	intron (NR_045501, intron 1 of 6)	12679.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54398909-6	chr14	54398415	54399415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	10557.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	85.5	292.0	251.0	66.0	269.5	214.5
Merged-chr6-125166599-4	chr6	125166092	125167092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008084)	promoter-TSS (NM_008084)	-125.0	NM_001289726	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	44.0	118.0	81.0	38.0	66.0	88.0
Merged-chr14-61058122-2	chr14	61057622	61058622	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-11267.0	NM_013869	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-38888190-2	chr3	38887690	38888690	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_183221, exon 1 of 17)	exon (NM_183221, exon 1 of 17)	1250.0	NM_183221	329628.0	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64806305-4	chr5	64805794	64806794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	2771.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-86888083-4	chr8	86887574	86888574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2816.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	16.0	43.5	26.0	17.0	45.0	27.0
Merged-chr8-94178381-2	chr8	94177881	94178881	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013602)	promoter-TSS (NM_013602)	-708.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-56937398-4	chr9	56936884	56937884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133976)	promoter-TSS (NM_133976)	-116.0	NM_133976	102462.0	Mm.12864	NM_133976	ENSMUSG00000032288	Imp3	1190002L16Rik|AI256594	IMP3, U3 small nucleolar ribonucleoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53745144-4	chr18	53744648	53745648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178686)	promoter-TSS (NM_178686)	-601.0	NM_178686	225523.0	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding	34.0	132.5	108.5	40.5	107.5	76.5
Merged-chr13-52016707-2	chr13	52016207	52017207	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-80034.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114719999-1	chr5	114719499	114720499	+	1000.0	f1_balb.idr	TTS (NR_105995)	TTS (NR_105995)	484.0	NR_105995	102465622.0		NR_105995	ENSMUSG00000098656	Mir7028	Gm27674|mmu-mir-7028	microRNA 7028	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91379208-4	chr16	91378767	91379767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 1 of 7)	intron (NM_001347258, intron 1 of 7)	6484.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-114934286-4	chr4	114933761	114934761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-8248.0	NM_015758	30923.0	Mm.377122	NM_015758	ENSMUSG00000044518	Foxe3	FREAC8|dyl|rct	forkhead box E3	protein-coding	1.5	0.0	0.0	0.5	0.0	0.0
Merged-chr15-101145636-4	chr15	101145098	101146098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001277259)	TTS (NM_001277259)	17076.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	99.5	190.0	166.5	84.5	213.0	140.0
Merged-chr10-82048176-4	chr10	82047695	82048695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001319203)	promoter-TSS (NM_001319203)	68.0	NM_001024626	408062.0	Mm.391409	NM_001024626	ENSMUSG00000061371	Zfp873	-	zinc finger protein 873	protein-coding	0.0	3.0	2.0	5.0	13.5	3.0
Merged-chr15-31467027-4	chr15	31466536	31467536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172606, intron 23 of 25)	intron (NM_172606, intron 23 of 25)	-13347.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166554130-4	chr2	166553621	166554621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10401.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-94786551-4	chr3	94786063	94787063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037711)	promoter-TSS (NM_001037711)	-48.0	NM_001037711	70737.0	Mm.87634	NM_001037711	ENSMUSG00000068876	Cgn	6330408J11Rik	cingulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24719985-4	chr17	24719475	24720475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008503)	promoter-TSS (NM_008503)	-10.0	NR_027900	73474.0	Mm.443320	NR_027900	ENSMUSG00000090101	Snhg9	1700072N11Rik	small nucleolar RNA host gene 9	ncRNA	319.0	722.0	622.0	381.0	906.5	667.5
Merged-chr9-40325829-4	chr9	40325315	40326315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	-4492.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-78919502-4	chr12	78919005	78920005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12567.0	NM_013738	27260.0	Mm.103380	NM_013738	ENSMUSG00000021118	Plek2	-	pleckstrin 2	protein-coding	5.0	2.5	0.0	2.5	5.0	4.5
Merged-chr12-80083366-4	chr12	80082860	80083860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29653.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-89031365-4	chr11	89030865	89031865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29383.0	NM_019505	56077.0	Mm.153695	NM_019505	ENSMUSG00000000276	Dgke	C87606|DAGK6|DGK	diacylglycerol kinase, epsilon	protein-coding	53.0	105.5	65.0	7.0	23.0	27.0
Merged-chr2-28641118-7	chr2	28640625	28641625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022887)	promoter-TSS (NM_022887)	-108.0	NM_001289575	64930.0	Mm.224354	NM_022887	ENSMUSG00000026812	Tsc1	-	tuberous sclerosis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64001289-2	chr7	64000789	64001789	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-62374.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106345439-4	chr1	106344925	106345925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 8 of 16)	intron (NM_133821, intron 8 of 16)	173556.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65684032-4	chr18	65683533	65684533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361052, intron 7 of 8)	intron (NM_001361052, intron 7 of 8)	-14235.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	49.0	121.0	97.0	53.5	168.0	94.5
Merged-chr16-57121623-5	chr16	57121089	57122089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138599)	promoter-TSS (NM_138599)	-125.0	NM_138599	28185.0	Mm.196933	NM_138599	ENSMUSG00000022752	Tomm70a	2610044B22Rik|D16Ium22|D16Ium22e|D16Wsu109e|Tom70|Tomm70|mKIAA0719	translocase of outer mitochondrial membrane 70A	protein-coding	44.0	62.5	66.5	40.0	119.5	54.0
Merged-chr6-31219858-2	chr6	31219358	31220358	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040257)	promoter-TSS (NR_040257)	-493.0	NR_040260	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57216213-4	chr16	57215736	57216736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 2 of 17)	intron (NM_026254, intron 2 of 17)	-14765.0	NM_001358434	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	35.5	85.0	40.5	31.5	55.0	58.0
Merged-chr2-136921147-4	chr2	136920651	136921651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355671, intron 2 of 6)	intron (NM_001355671, intron 2 of 6)	21800.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-127045656-4	chr4	127045168	127046168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15486.0	NM_026670	68310.0	Mm.273806	NM_026670	ENSMUSG00000043872	Zmym1	5830412B09Rik|AW209050	zinc finger, MYM domain containing 1	protein-coding	20.5	90.5	73.5	20.5	82.0	72.0
Merged-chr2-30982097-4	chr2	30981588	30982588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144885)	promoter-TSS (NM_144885)	-147.0	NM_144885	227707.0	Mm.235238	NM_144885	ENSMUSG00000026851	BC005624	-	cDNA sequence BC005624	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133465307-4	chr4	133464797	133465797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-14836.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	25.5	40.0	27.0	88.0	225.0	193.0
Merged-chr9-13749157-4	chr9	13748677	13749677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023858)	promoter-TSS (NM_023858)	-4.0	NR_024025	77116.0	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152741867-4	chr2	152741360	152742360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5609.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	13.0	40.5	38.5	13.0	20.0	22.0
Merged-chr4-126046935-4	chr4	126046453	126047453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025544)	promoter-TSS (NM_025544)	25.0	NM_025544	66407.0	Mm.195628	NM_025544	ENSMUSG00000028861	Mrps15	1500003E24Rik|2410002B11Rik|Mprs15	mitochondrial ribosomal protein S15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41605095-4	chr10	41604602	41605602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001358562, exon 29 of 48)	exon (NM_001358562, exon 29 of 48)	37086.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57501001-4	chr16	57500495	57501495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-48247.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-73177713-4	chr11	73177209	73178209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025318)	promoter-TSS (NM_025318)	626.0	NM_029564	76281.0	Mm.371656	NM_029564	ENSMUSG00000040158	Tax1bp3	1300011C24Rik|TIP-1	Tax1 (human T cell leukemia virus type I) binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78882567-4	chr17	78882065	78883065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011163)	promoter-TSS (NM_011163)	7.0	NM_011163	19106.0	Mm.378990	NM_011163	ENSMUSG00000024079	Eif2ak2	2310047A08Rik|4732414G15Rik|AI467567|AI747578|Pkr|Prkr|Tik	eukaryotic translation initiation factor 2-alpha kinase 2	protein-coding	10.5	24.5	23.5	10.0	4.5	11.0
Merged-chr10-80676534-4	chr10	80675978	80676978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021462)	promoter-TSS (NM_021462)	-185.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71327302-4	chr2	71326798	71327798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 4 of 17)	intron (NM_172436, intron 4 of 17)	40256.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-13054405-4	chr7	13053882	13054882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145819, intron 1 of 5)	CpG	382.0	NM_001290452	109889.0	Mm.10103	NM_145819	ENSMUSG00000030380	Mzf1	Mzf-2|Mzf2|Zfp121|Zfp98|Znf42	myeloid zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81762903-4	chr7	81762392	81763392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025997)	promoter-TSS (NM_025997)	-61.0	NM_025997	67148.0	Mm.241472	NM_025997	ENSMUSG00000038646	Fam103a1	2410047I02Rik|2610204K14Rik|RAM	family with sequence similarity 103, member A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-66817024-4	chr1	66816534	66817534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357156, intron 1 of 14)	CpG	561.0	NM_177645	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21367659-4	chr9	21367131	21368131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010561)	promoter-TSS (NM_010561)	-240.0	NM_001042708	16201.0	Mm.440026	NM_010561	ENSMUSG00000032178	Ilf3	MBII-26|MPHOSPH4|NF90|NFAR	interleukin enhancer binding factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99270599-4	chr10	99270102	99271102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7371.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6267764-4	chr2	6267252	6268252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 3 of 6)	intron (NR_040333, intron 3 of 6)	-54758.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	19.5	37.5	13.5	12.5	23.0	19.0
Merged-chr6-114395184-2	chr6	114394684	114395684	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MamTip2|DNA|hAT-Tip100	-2752.0	NM_001317125	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-69415710-4	chr18	69415259	69416259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	69599.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	34.0	90.0	57.0	44.0	100.0	55.5
Merged-chr12-85498039-4	chr12	85497539	85498539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24149.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93539960-4	chr10	93539468	93540468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027908)	promoter-TSS (NM_027908)	65.0	NM_027908	71761.0	Mm.244518	NM_027908	ENSMUSG00000015890	Amdhd1	1300019J08Rik	amidohydrolase domain containing 1	protein-coding	4.5	25.0	15.0	8.5	4.0	12.5
Merged-chr17-26123442-4	chr17	26122956	26123956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024227)	promoter-TSS (NM_024227)	-47.0	NM_024227	68611.0	Mm.273102	NM_024227	ENSMUSG00000024181	Mrpl28	1110015G04Rik|L28mt|MAAT1|MRP-L28|p15	mitochondrial ribosomal protein L28	protein-coding	4.5	33.5	22.0	25.5	33.0	10.0
Merged-chr5-120518916-2	chr5	120518416	120519416	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 2 of 13)	B1_Mus1|SINE|Alu	7724.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96968568-2	chr11	96968068	96969068	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030220, intron 1 of 6)	intron (NM_030220, intron 1 of 6)	9120.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121255127-4	chr5	121254621	121255621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181421, intron 2 of 75)	intron (NM_181421, intron 2 of 75)	34902.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-161109171-4	chr2	161108673	161109673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173368)	promoter-TSS (NM_173368)	-87.0	NR_126509	71389.0	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	2.5	2.0	3.0	0.0	2.0	2.0
Merged-chr7-39523920-4	chr7	39523506	39524506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004139, intron 1 of 3)	intron (NM_001004139, intron 1 of 3)	6240.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	38.0	70.0	69.5	9.5	21.5	21.5
Merged-chr15-38710381-4	chr15	38709890	38710890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18126.0	NR_131206	105463124.0	Mm.432448	NR_131206	ENSMUSG00000115620	Gm45924	Borg	predicted gene, 45924	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184034349-4	chr1	184033825	184034825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028516)	promoter-TSS (NM_028516)	-56.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	17.0	23.5	17.0	13.0	30.0	10.5
Merged-chr1-134060993-4	chr1	134060508	134061508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18147.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41605324-1	chr13	41604824	41605824	+	1000.0	f0_c57.idr	promoter-TSS (NM_001163572)	promoter-TSS (NM_001163572)	-892.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52956110-4	chr2	52955610	52956610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	98242.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34128648-4	chr10	34128130	34129130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175449)	promoter-TSS (NM_175449)	-658.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54464842-4	chr14	54464348	54465348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022993, intron 1 of 6)	intron (NM_022993, intron 1 of 6)	701.0	NM_022993	65107.0	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	35.0	56.0	53.0	16.5	59.0	36.0
Merged-chr1-176814765-4	chr1	176814266	176815266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151682, exon 1 of 17)	non-coding (NR_151682, exon 1 of 17)	106.0	NM_029756	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	84.5	182.0	96.5	108.0	135.5	109.5
Merged-chr3-116662656-4	chr3	116662156	116663156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008246)	promoter-TSS (NM_008246)	21.0	NM_008246	15247.0	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	31.0	65.5	71.0	62.0	81.5	83.5
Merged-chr12-55447274-4	chr12	55446738	55447738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45409.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100687235-4	chr15	100686743	100687743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033612, intron 1 of 7)	intron (NM_033612, intron 1 of 7)	677.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	16.0	0.5	9.0	0.0	4.0	5.5
Merged-chr2-103796007-4	chr2	103795537	103796537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111292, intron 1 of 16)	intron (NM_001111292, intron 1 of 16)	1041.0	NM_001111290	53872.0	Mm.427589	NM_016739	ENSMUSG00000027184	Caprin1	AL022980|Caprin-1|Gpiap|Gpiap1|Mmgpip137|P137|rng105	cell cycle associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-63911481-4	chr7	63911005	63912005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-5352.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	67.5	228.0	149.5	84.5	185.5	145.0
Merged-chr6-5211877-4	chr6	5211376	5212376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17930.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167689877-6	chr2	167689415	167690415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110334)	promoter-TSS (NR_110334)	-844.0	NR_110334	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-92988740-3	chr6	92988243	92989243	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	48161.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	1.5	1.0	1.0	0.0	2.5	2.5
Merged-chr17-29841901-4	chr17	29841404	29842404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081160, intron 9 of 15)	intron (NM_001081160, intron 9 of 15)	45978.0	NM_001081160	74762.0	Mm.40901	NM_001081160	ENSMUSG00000043557	Mdga1	1200011I03Rik|GPIM|Mamdc3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120528495-4	chr5	120528001	120529001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 12 of 13)	PB1D7|SINE|Alu	17309.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93818153-2	chr16	93817653	93818653	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-13968.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	52.5	98.0	87.5	56.5	137.5	117.5
Merged-chr15-93337048-4	chr15	93336555	93337555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028315)	promoter-TSS (NR_028315)	-120.0	NM_024189	67057.0	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80711147-4	chr15	80710641	80711641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144812)	promoter-TSS (NM_144812)	-172.0	NM_144812	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50509680-5	chr17	50509243	50510243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013880, exon 1 of 6)	exon (NM_013880, exon 1 of 6)	196.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	21.0	72.0	15.5	9.5	48.5	26.0
Merged-chr16-23984378-4	chr16	23983890	23984890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009744, intron 1 of 9)	intron (NM_009744, intron 1 of 9)	-3107.0	NM_001348026	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99627993-4	chr12	99627488	99628488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045288)	promoter-TSS (NR_045288)	-14.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126438513-4	chr4	126437997	126438997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001317173, exon 19 of 19)	3' UTR (NM_001317173, exon 19 of 19)	-8955.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90931252-4	chr5	90930750	90931750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026788)	promoter-TSS (NM_026788)	54.0	NM_026788	665563.0	Mm.153030	NM_026788	ENSMUSG00000029376	Mthfd2l	1110019K23Rik|C630010D07Rik	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like	protein-coding	6.5	9.5	1.0	16.5	10.0	10.0
Merged-chr10-13965708-4	chr10	13965259	13966259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010437)	promoter-TSS (NM_010437)	-316.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70834807-4	chr9	70834318	70835318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	99990.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57793182-4	chr15	57792622	57793622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 2 of 3)	intron (NM_199449, intron 2 of 3)	98455.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-31110977-1	chr7	31110477	31111477	+	1000.0	f0_c57.idr	promoter-TSS (NM_001276269)	promoter-TSS (NM_001276269)	20.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	44.5	55.5	68.0	55.5	92.5	67.0
Merged-chr11-54801967-4	chr11	54801468	54802468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14265.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122551491-6	chr8	122551019	122552019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357349)	promoter-TSS (NM_001357349)	-190.0	NM_001357349	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	73.5	135.0	160.5	53.5	149.5	113.5
Merged-chr19-4811171-4	chr19	4810686	4811686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019869, exon 1 of 3)	exon (NM_019869, exon 1 of 3)	448.0	NM_001290127	102902673.0	Mm.426069	NM_001290127	ENSMUSG00000096370	Gm21992	Rbm14-rbm4	predicted gene 21992	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5035909-4	chr2	5035413	5036413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356487, intron 7 of 13)	ID_B1|SINE|B4	-23122.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	26.5	93.0	48.5	24.0	78.5	54.0
Merged-chr3-27192020-4	chr3	27191519	27192519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	9015.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61687305-2	chr8	61686805	61687805	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 9 of 21)	intron (NM_001293772, intron 9 of 21)	72793.0	NM_001293773	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90515119-4	chr2	90514603	90515603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-35929.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	21.0	83.0	64.0	36.5	88.0	31.0
Merged-chr4-9122821-4	chr4	9122313	9123313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger5|DNA|TcMar-Tigger	-146480.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119826188-4	chr8	119825686	119826686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	14393.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58010406-4	chr11	58009944	58010944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028451, intron 1 of 18)	intron (NM_028451, intron 1 of 18)	1380.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	70.0	204.0	107.0	24.0	185.5	102.5
Merged-chr1-136127092-4	chr1	136126605	136127605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_046167)	TTS (NR_046167)	4078.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-124425133-4	chr9	124424625	124425625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_027950)	TTS (NR_027950)	1338.0	NR_015516	75135.0	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58481408-4	chr13	58480860	58481860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78017.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24134157-4	chr7	24133647	24134647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019941, intron 1 of 4)	CpG	1775.0	NR_153441	56525.0	Mm.295595	NM_019941	ENSMUSG00000047603	Zfp235	0610030O19Rik|AI428448	zinc finger protein 235	protein-coding	0.5	28.5	17.5	1.5	22.5	19.0
Merged-chr17-35826247-2	chr17	35825747	35826747	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008027, intron 8 of 12)	intron (NM_008027, intron 8 of 12)	2890.0	NM_008027	14251.0	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29130764-4	chr11	29130311	29131311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027869)	promoter-TSS (NM_027869)	60.0	NM_027869	71701.0	Mm.211131	NM_027869	ENSMUSG00000020464	Pnpt1	1200003F12Rik|Old35|PNPase|Pnptl1	polyribonucleotide nucleotidyltransferase 1	protein-coding	15.5	48.5	26.0	14.5	39.5	21.0
Merged-chr8-70891581-2	chr8	70891081	70892081	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053248, intron 2 of 14)	intron (NM_053248, intron 2 of 14)	1176.0	NM_053248	114479.0	Mm.172923	NM_053248	ENSMUSG00000000792	Slc5a5	NIS	solute carrier family 5 (sodium iodide symporter), member 5	protein-coding	2.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69920582-2	chr11	69920082	69921082	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166590)	promoter-TSS (NM_001166590)	48.0	NM_001166590	276770.0	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100053393-4	chr12	100052891	100053891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	-58940.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5764897-4	chr18	5764394	5765394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360982, intron 5 of 7)	intron (NM_001360982, intron 5 of 7)	172247.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	69.0	120.0	109.5	35.0	87.5	74.0
Merged-chr17-29395530-4	chr17	29395042	29396042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34628.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	91.0	154.5	171.0	11.5	48.0	25.0
Merged-chr4-57959419-4	chr4	57958920	57959920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3009.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-188984216-3	chr1	188983735	188984735	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153196, intron 10 of 17)	intron (NR_153196, intron 10 of 17)	23605.0	NM_001359577	226823.0	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	6.0	7.0	9.0	0.5	0.0	0.0
Merged-chr10-125271705-4	chr10	125271232	125272232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 3 of 5)	intron (NM_001358496, intron 3 of 5)	37084.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39503353-4	chr1	39502851	39503851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24596.0	NM_001357521	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96491896-2	chr9	96491396	96492396	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13221.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-68830090-3	chr7	68829597	68830597	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80859.0	NM_025549	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-89060821-4	chr11	89060337	89061337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019505)	promoter-TSS (NM_019505)	86.0	NR_110336	414094.0	Mm.124287	NM_001001497		Dgkeos	A930013B10Rik	diacylglycerol kinase, epsilon, opposite strand	ncRNA	1.0	35.0	16.0	9.5	1.5	13.0
Merged-chr17-45572593-4	chr17	45572097	45573097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008302, intron 1 of 10)	CpG	664.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	131.0	322.0	235.0	142.0	332.5	224.5
Merged-chr10-67204707-2	chr10	67204207	67205207	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 3 of 25)	intron (NM_207221, intron 3 of 25)	18957.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16518878-4	chr1	16518510	16519510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001347044, exon 1 of 14)	5' UTR (NM_001347044, exon 1 of 14)	105.0	NM_001347044	29819.0	Mm.216257	NM_025303	ENSMUSG00000025920	Stau2	-	staufen double-stranded RNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61702618-4	chr9	61702069	61703069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	211941.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56720450-4	chr19	56719956	56720956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1916.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85972566-2	chr11	85972066	85973066	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51784.0	NR_046030	629393.0	Mm.372867	NR_046030		Gm20759	-	predicted gene, 20759	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164746018-4	chr2	164745543	164746543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133763)	promoter-TSS (NM_133763)	28.0	NM_133763	76233.0	Mm.440009	NM_133763	ENSMUSG00000017299	Dnttip1	6430706C13Rik	deoxynucleotidyltransferase, terminal, interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41263448-4	chr19	41262964	41263964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133352, intron 1 of 14)	CpG	540.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	32.0	121.5	103.5	35.0	94.5	71.0
Merged-chr7-63989909-4	chr7	63989418	63990418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-51003.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	4.0	13.0	11.0	0.0	5.0	5.0
Merged-chr12-40218186-2	chr12	40217686	40218686	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013562, intron 1 of 11)	B1F|SINE|Alu	4625.0	NR_035459	100316693.0		NR_035459	ENSMUSG00000089371	Mir1938	mir-1938|mmu-mir-1938	microRNA 1938	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27155073-2	chr3	27154573	27155573	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040548, intron 2 of 2)	intron (NR_040548, intron 2 of 2)	1047.0	NR_040548	76657.0	Mm.417839	NR_040548	ENSMUSG00000097584	1700125G22Rik	-	RIKEN cDNA 1700125G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182409047-4	chr1	182408530	182409530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173378)	promoter-TSS (NM_173378)	-137.0	NM_173378	209456.0	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-36968805-4	chr14	36968295	36969295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027045)	promoter-TSS (NM_027045)	-31.0	NM_027045	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122281370-4	chr5	122280861	122281861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3037.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3159816-2	chr11	3159308	3160308	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 10 of 32)	MTD|LTR|ERVL-MaLR	33655.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-72581225-4	chr14	72580717	72581717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 7 of 25)	intron (NM_207636, intron 7 of 25)	128786.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	6.0	19.0	14.0	21.5	26.0	22.5
Merged-chr4-136140492-4	chr4	136140010	136141010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3312.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	51.5	195.0	122.5	50.0	116.0	116.5
Merged-chr4-150212659-4	chr4	150212191	150213191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B1|LTR|ERVK	-11556.0	NM_009802	12353.0	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	89.5	260.5	177.0	56.0	160.5	101.5
Merged-chr5-24686400-4	chr5	24685891	24686891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305264, intron 1 of 14)	intron (NM_001305264, intron 1 of 14)	576.0	NM_001305264	53312.0	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65765103-4	chr5	65764603	65765603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024917, intron 1 of 19)	intron (NM_001024917, intron 1 of 19)	1582.0	NM_001024917	333789.0	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	15.0	13.0	19.0	23.0	15.0	19.0
Merged-chr19-12794840-4	chr19	12794329	12795329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053009, intron 1 of 10)	CpG	1294.0	NR_024093	664779.0	Mm.290924	NM_001039718	ENSMUSG00000024695	Gm44505	Zfp91-Cntf|Zfp91Cntf	predicted readthrough transcript (NMD candidate), 44505	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20358061-4	chr16	20357566	20358566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013790, intron 24 of 29)	intron (NM_013790, intron 24 of 29)	-32662.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132620123-3	chr4	132619628	132620628	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-18918.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	11.0	34.0	15.5	16.5	40.0	17.0
Merged-chr12-119230794-4	chr12	119230286	119231286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177290, intron 1 of 13)	intron (NM_177290, intron 1 of 13)	7490.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33641984-4	chr16	33641491	33642491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 8 of 11)	intron (NM_001083902, intron 8 of 11)	-42475.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124805336-1	chr6	124804836	124805836	+	1000.0	f0_c57.idr	Intergenic	PB1D10|SINE|Alu	-3325.0	NM_001306051	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79370826-4	chr2	79370324	79371324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001048176, intron 2 of 12)	intron (NM_001048176, intron 2 of 12)	58164.0	NM_001048176	228094.0	Mm.440704	NM_001033295	ENSMUSG00000075256	Cerkl	Gm1958|Rp26	ceramide kinase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23591835-4	chr16	23591305	23592305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18114.0	NM_023386	67775.0	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-66985834-4	chr3	66985339	66986339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356273)	promoter-TSS (NM_001356273)	-128.0	NM_001356273	66880.0	Mm.316418	NM_025822	ENSMUSG00000034544	Rsrc1	1200013F24Rik|SRrp53	arginine/serine-rich coiled-coil 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84067313-4	chr8	84066808	84067808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009055, intron 1 of 20)	CpG	472.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	18.5	86.5	38.5	20.5	122.5	39.5
Merged-chr6-114457539-4	chr6	114457030	114458030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317124)	promoter-TSS (NM_001317124)	-992.0	NM_001317124	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30660338-4	chr13	30659814	30660814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134068, intron 1 of 7)	intron (NM_134068, intron 1 of 7)	255.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-72530437-4	chr9	72529924	72530924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045735, intron 1 of 2)	intron (NR_045735, intron 1 of 2)	1434.0	NR_045735	75115.0	Mm.280755	NR_045735	ENSMUSG00000096986	4930509E16Rik	-	RIKEN cDNA 4930509E16 gene	ncRNA	16.0	17.0	13.0	12.5	23.0	17.5
Merged-chr12-30911605-4	chr12	30911055	30912055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013709)	promoter-TSS (NM_013709)	57.0	NM_021330	11431.0	Mm.359831	NM_021330	ENSMUSG00000044573	Acp1	4632432E04Rik|AI427468|Acp-1|LMW-PTP|Lmptp	acid phosphatase 1, soluble	protein-coding	11.5	76.0	40.5	31.5	29.5	52.0
Merged-chr4-62525400-4	chr4	62524851	62525851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177607)	promoter-TSS (NM_177607)	-18.0	NM_001356420	214106.0	Mm.73212	NM_177607	ENSMUSG00000058046	4933430I17Rik	bN189G18.7	RIKEN cDNA 4933430I17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47226051-3	chr17	47225536	47226536	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 3 of 19)	intron (NM_001097623, intron 3 of 19)	-4194.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117746409-4	chr10	117745919	117746919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029875)	promoter-TSS (NM_029875)	-61.0	NM_029875	215436.0	Mm.256753	NM_029875	ENSMUSG00000060181	Slc35e3	9330166G04Rik|AI481200	solute carrier family 35, member E3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62088133-4	chr18	62087655	62088655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91826.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-46273107-4	chr9	46272617	46273617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011752)	promoter-TSS (NM_011752)	53.0	NM_011752	22687.0	Mm.17519	NM_011752	ENSMUSG00000032078	Zpr1	AI303781|Zfp259|Znf259	ZPR1 zinc finger	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37348334-4	chr13	37347828	37348828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	2983.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	16.5	14.5	19.0	16.0	14.0	20.5
Merged-chr2-26409219-4	chr2	26408712	26409712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290437)	promoter-TSS (NM_001290437)	7.0	NM_033134	64436.0	Mm.330070	NM_033134	ENSMUSG00000026925	Inpp5e	1200002L24Rik|72kDa|mKIAA0123	inositol polyphosphate-5-phosphatase E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45968350-4	chr13	45967871	45968871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3380.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-75823393-4	chr13	75822889	75823889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16496.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	34.5	149.5	56.0	82.5	153.5	99.0
Merged-chr4-11191306-4	chr4	11190822	11191822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009830)	promoter-TSS (NM_009830)	-29.0	NM_001037134	12448.0	Mm.35867	NM_009830	ENSMUSG00000028212	Ccne2	-	cyclin E2	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr6-108719027-4	chr6	108718535	108719535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58101.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	31.0	31.5	35.0	25.5	46.0	40.0
Merged-chr7-16924147-4	chr7	16923658	16924658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007590)	promoter-TSS (NM_007590)	-126.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-37538604-4	chr17	37538089	37539089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8632.0	NM_001005485	545205.0	Mm.383371	NM_001005485	ENSMUSG00000090675	Olfr111	-	olfactory receptor 111	protein-coding	9.5	38.5	33.0	2.0	9.0	0.5
Merged-chr6-100211399-4	chr6	100210880	100211880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75978.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84981104-4	chr8	84980584	84981584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2336.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	129.0	335.5	240.5	85.0	308.0	198.0
Merged-chr14-60265146-4	chr14	60264624	60265624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144843)	promoter-TSS (NM_144843)	-81.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81812510-2	chr15	81812010	81813010	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_017376, intron 1 of 3)	intron (NM_017376, intron 1 of 3)	1096.0	NM_017376	21685.0	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	4.0	5.5	2.0	0.0	4.0	8.5
Merged-chr6-24166952-3	chr6	24166458	24167458	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019481, intron 1 of 14)	MIR|SINE|MIR	1134.0	NM_019481	55961.0	Mm.19299	NM_019481	ENSMUSG00000029700	Slc13a1	AI314066|AI987826|NaSi-1|Nas1	solute carrier family 13 (sodium/sulfate symporters), member 1	protein-coding	0.0	2.5	0.0	6.0	8.0	3.5
Merged-chr6-54940644-2	chr6	54940144	54941144	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171007, intron 4 of 11)	RMER10A|LTR|ERVL	31017.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51615785-4	chr11	51615294	51616294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3979.0	NM_026631	52530.0	Mm.28203	NM_026631	ENSMUSG00000001056	Nhp2	2410130M07Rik|D11Ertd175e|Nola2	NHP2 ribonucleoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35870843-4	chr17	35870334	35871334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146710, intron 2 of 3)	intron (NM_001146710, intron 2 of 3)	4219.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	42.0	105.0	53.5	69.5	91.0	64.5
Merged-chr11-60534995-2	chr11	60534495	60535495	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-2688.0	NM_172943	268420.0	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-27791624-4	chr5	27791108	27792108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018878)	promoter-TSS (NM_018878)	-58.0	NM_018878	55982.0	Mm.277190	NM_018878	ENSMUSG00000002221	Paxip1	D5Ertd149e|PTIP	PAX interacting (with transcription-activation domain) protein 1	protein-coding	77.5	292.5	225.0	68.5	271.0	176.0
Merged-chr4-88515821-4	chr4	88515332	88516332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6962.0	NM_010510	15977.0	Mm.1245	NM_010510	ENSMUSG00000048806	Ifnb1	IFN-beta|IFNB|Ifb	interferon beta 1, fibroblast	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69199696-4	chr12	69199189	69200189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033222, exon 2 of 2)	non-coding (NR_033222, exon 2 of 2)	-1260.0	NM_027269	109065.0	Mm.107180	NM_027269	ENSMUSG00000020973	Dnaaf2	Ktu|TU54|kintoun|mknt	dynein, axonemal assembly factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78149291-4	chr10	78148794	78149794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	UCON26|Unknown|Unknown	20474.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165882056-4	chr2	165881559	165882559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252587, intron 1 of 11)	intron (NM_001252587, intron 1 of 11)	219.0	NM_001281926	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	62.0	118.5	104.0	50.5	133.0	84.0
Merged-chr7-25683266-2	chr7	25682766	25683766	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172148, intron 1 of 2)	intron (NM_172148, intron 1 of 2)	2108.0	NM_172148	232987.0	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70692519-2	chr9	70692019	70693019	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007399, intron 1 of 15)	intron (NM_007399, intron 1 of 15)	13537.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171617092-4	chr1	171616588	171617588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9678.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	29.5	39.0	56.0	13.0	28.0	49.5
Merged-chr12-24758520-4	chr12	24758000	24759000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50246.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	6.5	9.5	12.0	33.0	44.0	45.5
Merged-chr8-84840011-2	chr8	84839511	84840511	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001297606, intron 1 of 8)	MIRb|SINE|MIR	654.0	NM_001297607	19358.0	Mm.255539	NM_009010	ENSMUSG00000003813	Rad23a	2310040P19Rik|AL024030|HR23A|mHR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding	26.0	34.5	21.5	28.5	35.0	20.5
Merged-chr4-57956459-4	chr4	57955956	57956956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011660)	promoter-TSS (NM_011660)	-45.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107101157-4	chr13	107100654	107101654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	78584.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21716337-4	chr13	21715822	21716822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178182)	promoter-TSS (NM_178182)	-90.0	NM_178182	319191.0	Mm.14767	NM_178182	ENSMUSG00000071516	Hist1h2ai	H2a-291A	histone cluster 1, H2ai	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47732161-3	chr19	47731661	47732661	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026377, intron 1 of 3)	G-rich|Low_complexity|Low_complexity	405.0	NM_026377	67788.0	Mm.181610	NM_026377	ENSMUSG00000025066	Sfr1	6330577E15Rik|Meir5	SWI5 dependent recombination repair 1	protein-coding	51.0	164.0	82.5	59.0	214.0	95.5
Merged-chr7-44528151-4	chr7	44527649	44528649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019866, exon 6 of 6)	exon (NM_019866, exon 6 of 6)	-3480.0	NM_146189	233199.0	Mm.358888	NM_146189	ENSMUSG00000038670	Mybpc2	-	myosin binding protein C, fast-type	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43445608-2	chr4	43445108	43446108	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011571, intron 7 of 9)	intron (NM_011571, intron 7 of 9)	3331.0	NM_011571	21754.0	Mm.485441	NM_011571	ENSMUSG00000028458	Tesk1	AI326901	testis specific protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-89311042-4	chr4	89310540	89311540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007670)	promoter-TSS (NM_007670)	-8.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	10.5	36.5	40.0	28.5	79.0	51.0
Merged-chr4-134932412-2	chr4	134931912	134932912	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026780, intron 2 of 6)	RSINE1|SINE|B4	1432.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167635136-2	chr2	167634636	167635636	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3131.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-101836726-4	chr3	101836222	101837222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172295)	promoter-TSS (NM_172295)	-499.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63384894-4	chr9	63384382	63385382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7030.0	NM_011840	23938.0	Mm.325746	NM_011840	ENSMUSG00000058444	Map2k5	AI324775|AI428457|MEK5|Mapkk5|Prkmk5	mitogen-activated protein kinase kinase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98683936-4	chr15	98683438	98684438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6477.0	NM_172612	223881.0	Mm.274010	NM_172612	ENSMUSG00000054855	Rnd1	A830014L09Rik|Arhs	Rho family GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70503826-4	chr9	70503319	70504319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033604)	promoter-TSS (NM_033604)	-44.0	NM_033604	93836.0	Mm.29783	NM_033604	ENSMUSG00000032217	Rnf111	ARK|Arkadia	ring finger 111	protein-coding	9.5	10.0	14.5	6.5	7.5	8.0
Merged-chr12-113138373-2	chr12	113137873	113138873	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1863.0	NM_024223	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-3995925-4	chr15	3995422	3996422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145930)	promoter-TSS (NM_145930)	-117.0	NR_045740	328489.0	Mm.447020	NR_045740	ENSMUSG00000097662	Gm2093	100039196|A630020A06	predicted gene 2093	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37844072-4	chr13	37843587	37844587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	16694.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	18.0	13.5	6.0	7.0	11.0
Merged-chr6-124901256-4	chr6	124900748	124901748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	10457.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124478989-4	chr5	124478452	124479452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030259)	promoter-TSS (NM_030259)	-717.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60261161-2	chr10	60260661	60261661	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16467.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32788355-4	chr17	32787874	32788874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346705)	promoter-TSS (NM_001346705)	-87.0	NM_172458	208292.0	Mm.38813	NM_172458	ENSMUSG00000024298	Zfp871	4732483N19|9030612M13Rik|AI118577|AI265322|mKIAA3006	zinc finger protein 871	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114818470-4	chr11	114817978	114818978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19554.0	NM_181749	217302.0	Mm.269127	NM_181749	ENSMUSG00000034677	Gpr142	PGR2	G protein-coupled receptor 142	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118674502-4	chr9	118674055	118675055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 11 of 27)	intron (NM_133721, intron 11 of 27)	-37137.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	84.0	213.0	127.5	50.5	154.5	97.5
Merged-chr4-156198632-2	chr4	156198132	156199132	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_015783)	TTS (NM_015783)	-1144.0	NM_021604	11603.0	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96301333-3	chr3	96300828	96301828	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7359.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	99.5	253.5	177.5	98.5	250.0	149.0
Merged-chr9-107888089-4	chr9	107887603	107888603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028369)	promoter-TSS (NM_028369)	-26.0	NM_028369	72825.0	Mm.38037	NM_028369	ENSMUSG00000032583	Mon1a	2810468K17Rik	MON1 homolog A, secretory traffciking associated	protein-coding	8.5	15.0	24.0	11.5	12.5	12.0
Merged-chr16-50751619-2	chr16	50751119	50752119	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18846.0	NR_028300	68190.0	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128993167-4	chr4	128992652	128993652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033966)	promoter-TSS (NM_001033966)	-72.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141147914-4	chr4	141147399	141148399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172518)	promoter-TSS (NM_172518)	-23.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44363605-4	chr19	44363116	44364116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30290.0	NM_183216	329065.0	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-56285055-4	chr8	56284559	56285559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-9493.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52602995-4	chr13	52602475	52603475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 1 of 13)	intron (NM_011518, intron 1 of 13)	6093.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-57181922-4	chr2	57181416	57182416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040356)	promoter-TSS (NR_040356)	85.0	NR_040633	75279.0	Mm.401987	NR_040633	ENSMUSG00000086396	4930555B11Rik	-	RIKEN cDNA 4930555B11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143059645-4	chr7	143059143	143060143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133655, intron 1 of 7)	intron (NM_133655, intron 1 of 7)	-5957.0	NR_110354	97423.0	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-3548064-4	chr13	3547537	3548537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008112, intron 1 of 10)	MLTR11A|LTR|ERVK	9962.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	11.0	25.5	23.5	24.0	63.5	30.5
Merged-chr1-39579349-4	chr1	39578844	39579844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1997.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98944795-4	chr13	98944289	98945289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18405.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	29.5	99.5	52.5	17.0	124.5	65.5
Merged-chr17-3114963-4	chr17	3114440	3115440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134123)	promoter-TSS (NM_134123)	-32.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-54077216-2	chr10	54076716	54077716	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038016, intron 1 of 2)	intron (NR_038016, intron 1 of 2)	1294.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-54025827-4	chr5	54025338	54026338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	27315.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61108680-4	chr18	61108182	61109182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 2 of 21)	intron (NM_001037859, intron 2 of 21)	3110.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-24349664-4	chr9	24349189	24350189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153451.0	NM_001359948	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165318060-4	chr2	165317567	165318567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080287, intron 1 of 20)	intron (NM_080287, intron 1 of 20)	-1716.0	NM_001302754	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57692473-2	chr15	57691973	57692973	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2194.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45018607-4	chr4	45018158	45019158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285800)	promoter-TSS (NM_001285800)	49.0	NM_001285800	64424.0	Mm.282932	NM_022811	ENSMUSG00000028318	Polr1e	53kDa|AU042259|D030019D19Rik|Paf53|Praf1	polymerase (RNA) I polypeptide E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-125866256-4	chr2	125865767	125866767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291002)	promoter-TSS (NM_001291002)	44.0	NM_001291002	69976.0	Mm.20216	NM_175154	ENSMUSG00000027207	Galk2	2810017M24Rik|AI327030|Gk2	galactokinase 2	protein-coding	1.0	3.0	3.0	0.0	5.0	1.5
Merged-chr19-9914023-4	chr19	9913534	9914534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14501.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100124898-4	chr13	100124413	100125413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011420)	promoter-TSS (NM_011420)	58.0	NM_011420	20595.0	Mm.2025	NM_011420	ENSMUSG00000021645	Smn1	AI849087|Gemin1|Smn	survival motor neuron 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62544427-2	chr11	62543927	62544927	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5166.0	NM_028448	73139.0	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60878861-2	chr2	60878361	60879361	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	MIR|SINE|MIR	2577.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-3346129-3	chr6	3345619	3346619	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53452.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5610020-7	chr19	5609484	5610484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037603)	promoter-TSS (NR_037603)	110.0	NM_001199249	81601.0	Mm.228930	NM_178637	ENSMUSG00000024926	Kat5	AI839539|CPLA2|Htatip|Htatip1|PLIP|Tip55|Tip60	K(lysine) acetyltransferase 5	protein-coding	3.0	20.5	18.0	14.5	1.5	14.0
Merged-chr2-75777331-4	chr2	75776797	75777797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54880.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	16.0	54.5	19.0	11.5	21.5	7.5
Merged-chr12-102002337-3	chr12	102001822	102002822	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016856, intron 13 of 14)	intron (NM_016856, intron 13 of 14)	26348.0	NM_016856	51786.0	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91966481-4	chr2	91966000	91967000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-2937.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69098809-4	chr11	69098296	69099296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011065)	promoter-TSS (NM_011065)	-153.0	NM_011065	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35661555-3	chr2	35661054	35662054	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001114125, exon 3 of 17)	exon (NM_001114125, exon 3 of 17)	-30440.0	NM_001001602	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97683788-2	chr11	97683288	97684288	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_139311, exon 20 of 20)	3' UTR (NM_139311, exon 20 of 20)	-2164.0	NM_001085500	217149.0	Mm.29659	NM_001085500	ENSMUSG00000078695	Cisd3	Mel-13|Mel13	CDGSH iron sulfur domain 3	protein-coding	12.0	18.0	14.5	8.5	5.5	20.5
Merged-chr15-10486633-2	chr15	10486133	10487133	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026396)	promoter-TSS (NM_026396)	595.0	NM_001289447	19355.0	Mm.38376	NM_011232	ENSMUSG00000022248	Rad1	mRAD1	RAD1 checkpoint DNA exonuclease	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30549178-4	chr14	30548747	30549747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009388, exon 1 of 14)	5' UTR (NM_009388, exon 1 of 14)	116.0	NM_009388	21881.0	Mm.290692	NM_009388	ENSMUSG00000021957	Tkt	p68	transketolase	protein-coding	119.0	245.5	181.5	59.5	247.0	183.5
Merged-chr4-119965244-3	chr4	119964737	119965737	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	150559.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	6.5	12.5	15.5	14.0	39.0	34.0
Merged-chr15-58046794-4	chr15	58046277	58047277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001042438)	TTS (NM_001042438)	-12483.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-68861212-7	chr2	68860699	68861699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172856)	promoter-TSS (NM_172856)	-242.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34031163-4	chr17	34030672	34031672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011306)	promoter-TSS (NM_011306)	518.0	NM_001077709	14977.0	Mm.18556	NM_008202	ENSMUSG00000024327	Slc39a7	AA408174|AI117660|AL024048|H-2Ke4|H2-Ke4|Ke-4|Ke4|Ring5|Zip7	solute carrier family 39 (zinc transporter), member 7	protein-coding	7.5	2.5	5.0	0.5	10.0	8.5
Merged-chr5-124492765-4	chr5	124492267	124493267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_021430)	TTS (NM_021430)	9612.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171786277-1	chr1	171785777	171786777	+	1000.0	f0_balb.idr	intron (NM_001360898, intron 3 of 4)	intron (NM_001360898, intron 3 of 4)	19145.0	NM_001360898	27218.0	Mm.103648	NM_013730	ENSMUSG00000015316	Slamf1	4933415F16|AA177906|CD150|CDw150|ESTM51|IPO-3|Slam	signaling lymphocytic activation molecule family member 1	protein-coding	2.5	2.0	3.5	2.5	0.0	2.5
Merged-chr11-23823411-4	chr11	23822918	23823918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52448.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20697941-2	chr18	20697441	20698441	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 5 of 8)	intron (NM_019737, intron 5 of 8)	-32681.0	NR_155534	102633478.0		NR_155534	ENSMUSG00000085595	Gm16090	-	predicted gene 16090	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50210769-3	chr11	50210280	50211280	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011018)	promoter-TSS (NM_011018)	40.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-10726254-7	chr18	10725742	10726742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_144860, exon 1 of 21)	5' UTR (NM_144860, exon 1 of 21)	617.0	NM_144860	225164.0	Mm.21500	NM_144860	ENSMUSG00000024294	Mib1	DIP-1|E430019M12Rik|Mib|mKIAA1323	mindbomb E3 ubiquitin protein ligase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147076639-4	chr5	147076152	147077152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181730)	promoter-TSS (NM_181730)	-80.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	38.0	81.0	53.0	34.5	143.0	65.5
Merged-chr16-5233565-4	chr16	5233081	5234081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145362)	promoter-TSS (NM_145362)	-40.0	NM_145362	208211.0	Mm.34581	NM_145362	ENSMUSG00000039427	Alg1	HMAT1|HMT1	asparagine-linked glycosylation 1 (beta-1,4-mannosyltransferase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94035437-4	chr10	94034926	94035926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053072)	promoter-TSS (NM_053072)	316.0	NM_001304720	215008.0	Mm.124177	NM_172538	ENSMUSG00000036099	Vezt	A630071D13Rik|AI848282	vezatin, adherens junctions transmembrane protein	protein-coding	13.5	25.0	9.0	0.0	11.0	2.5
Merged-chr2-80638847-4	chr2	80638350	80639350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027091)	promoter-TSS (NM_027091)	38.0	NM_027091	69482.0	Mm.29200	NM_027091	ENSMUSG00000026999	Nup35	2310006I24Rik|35kDa|5330402E05Rik|MP44|NO44	nucleoporin 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122476142-4	chr8	122475634	122476634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153775)	promoter-TSS (NM_153775)	-9.0	NM_153775	66965.0	Mm.482288	NM_153775	ENSMUSG00000049482	Ctu2	2310061F22Rik|C16orf84|Ncs2	cytosolic thiouridylase subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106817225-2	chr11	106816725	106817725	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166685, intron 16 of 18)	intron (NM_001166685, intron 16 of 18)	27973.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-103114740-4	chr4	103114226	103115226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146254)	promoter-TSS (NM_146254)	336.0	NM_001286222	71148.0	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-123252974-4	chr6	123252463	123253463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9144.0	NM_001163161	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-104287052-4	chr13	104286564	104287564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081020)	promoter-TSS (NM_001081020)	-771.0	NR_136938	108154.0	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108835943-4	chr12	108835459	108836459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181328)	promoter-TSS (NM_181328)	-83.0	NM_181328	214663.0	Mm.266264	NM_181328	ENSMUSG00000021265	Slc25a29	C030003J19Rik|CACL|mCACL	solute carrier family 25 (mitochondrial carrier, palmitoylcarnitine transporter), member 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66816655-4	chr15	66816158	66817158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	15171.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126846965-2	chr8	126846465	126847465	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-2055.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	85.0	75.5	67.5	84.0	78.5	67.5
Merged-chr5-64808224-2	chr5	64807724	64808724	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	4701.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	7.5	11.5	5.5	2.5	7.0	5.0
Merged-chr11-53748838-4	chr11	53748319	53749319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4A|LINE|L1	14835.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88550373-4	chr4	88549866	88550866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7879.0	NM_206870	242517.0	Mm.377261	NM_206870	ENSMUSG00000096011	Ifna15	Gm12597|Ifnaa|MuIFN-alpha-A	interferon alpha 15	protein-coding	1.0	1.0	0.0	4.0	3.0	1.0
Merged-chr19-23141077-4	chr19	23140567	23141567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010638)	promoter-TSS (NM_010638)	-159.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79987156-4	chr10	79986681	79987681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	B3|SINE|B2	-1419.0	NM_007725	12798.0	Mm.157770	NM_007725	ENSMUSG00000004665	Cnn2	AA408047|AI324678|Calpo2	calponin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-13144976-5	chr17	13144418	13145418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13127.0	NM_199252	381058.0	Mm.390935	NM_199252	ENSMUSG00000067049	Unc93a	Unc93l|unc-93A	unc-93 homolog A (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50238678-4	chr11	50238189	50239189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008521)	promoter-TSS (NM_008521)	-157.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86528295-4	chr1	86527786	86528786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008972, intron 1 of 4)	CpG-365	1729.0	NM_001360830	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-41105313-4	chr9	41104862	41105862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	-25856.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	65.5	84.5	79.5	51.0	77.0	80.0
Merged-chr14-78849213-4	chr14	78848749	78849749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173758)	promoter-TSS (NM_173758)	71.0	NM_173758	219189.0	Mm.159651	NM_027906	ENSMUSG00000058997	Vwa8	1300010F03Rik|4932416F07Rik|AI957255|Kiaa0564|mKIAA0564	von Willebrand factor A domain containing 8	protein-coding	1.0	18.0	14.5	15.0	7.5	4.5
Merged-chr9-21162288-2	chr9	21161788	21162788	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-3426.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-144964102-4	chr5	144963597	144964597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038627, intron 1 of 17)	intron (NM_001038627, intron 1 of 17)	1733.0	NM_001038627	75788.0	Mm.27735	NM_029438	ENSMUSG00000038780	Smurf1	4930431E10Rik|mKIAA1625	SMAD specific E3 ubiquitin protein ligase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-9100643-4	chr5	9100146	9101146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081029)	promoter-TSS (NM_001081029)	-91.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-72413470-4	chr1	72412975	72413975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106054.0	NM_001357519	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75504442-2	chr18	75503942	75504942	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 9 of 11)	intron (NM_201354, intron 9 of 11)	-10203.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	7.0	33.0	33.5	20.0	25.5	17.5
Merged-chr13-8842427-4	chr13	8841942	8842942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039388, intron 9 of 13)	intron (NM_001039388, intron 9 of 13)	28602.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-121431611-4	chr1	121431149	121432149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029955, intron 1 of 23)	intron (NM_029955, intron 1 of 23)	582.0	NM_029955	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	138.5	271.0	257.5	147.0	267.0	198.0
Merged-chr19-21895731-4	chr19	21895225	21896225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	117385.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110533025-4	chr9	110532500	110533500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081340, intron 1 of 20)	CpG	403.0	NM_001081340	235626.0	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94474388-4	chr10	94473880	94474880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-40477.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73003219-4	chr2	73002706	73003706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22760.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92473831-4	chr1	92473335	92474335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024197)	promoter-TSS (NM_024197)	-77.0	NM_024197	67273.0	Mm.248778	NM_024197	ENSMUSG00000026260	Ndufa10	2900053E13Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77820895-4	chr18	77820392	77821392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 1 of 14)	L1ME2|LINE|L1	-24502.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82338049-4	chr15	82337547	82338547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355546, intron 2 of 8)	intron (NM_001355546, intron 2 of 8)	779.0	NM_001355546	17939.0	Mm.20325	NM_008669	ENSMUSG00000022453	Naga	-	N-acetyl galactosaminidase, alpha	protein-coding	19.0	71.5	27.0	24.5	57.5	42.5
Merged-chr10-62206200-4	chr10	62205699	62206699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 1 of 7)	intron (NM_197996, intron 1 of 7)	-11972.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	4.0	15.0	12.5	4.0	15.5	13.0
Merged-chr4-105263814-4	chr4	105263317	105264317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106470.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64023049-4	chr9	64022548	64023548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008542)	promoter-TSS (NM_008542)	-989.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-116972420-4	chr13	116971909	116972909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	PB1D9|SINE|Alu	53107.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	2.5	14.5	17.0	3.5	11.0	6.0
Merged-chr9-124125763-4	chr9	124125246	124126246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009917, exon 2 of 2)	3' UTR (NM_009917, exon 2 of 2)	4203.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117420835-1	chr10	117420335	117421335	+	1000.0	f1_balb.idr	Intergenic	B2_Mm2|SINE|B2	26600.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	0.0	4.0	2.0	4.0	0.0	1.0
Merged-chr10-44729178-4	chr10	44728675	44729675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_C_Mam|LINE|RTE-X	-270427.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-43849717-4	chr10	43849222	43850222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23815.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85338994-1	chr12	85338494	85339494	+	1000.0	f0_balb.idr	intron (NM_145138, intron 1 of 21)	CpG	368.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100039007-4	chr5	100038513	100039513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026421)	promoter-TSS (NM_026421)	209.0	NM_016690	50926.0	Mm.389579	NM_016690	ENSMUSG00000029328	Hnrnpdl	AA407431|AA959857|D5Ertd650e|D5Wsu145e|Hnrnpdl1|Hnrpdl|JKTBP|hnRNP DL|hnRNP-DL	heterogeneous nuclear ribonucleoprotein D-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119713593-1	chr13	119713093	119714093	+	1000.0	f0_balb.idr	intron (NM_175538, intron 3 of 3)	intron (NM_175538, intron 3 of 3)	23242.0	NM_001291439	208715.0	Mm.61526	NM_145942	ENSMUSG00000093930	Hmgcs1	B130032C06Rik	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141215768-4	chr7	141215257	141216257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025886)	promoter-TSS (NM_025886)	-103.0	NM_025886	66985.0	Mm.21202	NM_025886	ENSMUSG00000038618	Rassf7	2400009B11Rik|AW210608	Ras association (RalGDS/AF-6) domain family (N-terminal) member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41450353-4	chr10	41449890	41450890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153398)	promoter-TSS (NM_153398)	32.0	NR_102360	268294.0	Mm.258475	NM_153398	ENSMUSG00000019826	Zbtb24	BC055367|Bif1|Bsg1|ZNF450	zinc finger and BTB domain containing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127323155-4	chr2	127322657	127323657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13002.0	NM_010090	13537.0	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73428114-2	chr7	73427614	73428614	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081345, exon 39 of 39)	3' UTR (NM_001081345, exon 39 of 39)	-52340.0	NR_040324	319783.0	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-57910707-4	chr14	57910212	57911212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20376.0	NM_001360097	75965.0	Mm.29044	NM_029492	ENSMUSG00000021969	Zdhhc20	4930542A17Rik|5033406L14Rik|AI448102|B230110O18Rik|HK11	zinc finger, DHHC domain containing 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140701914-2	chr5	140701414	140702414	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347517, intron 1 of 22)	CpG	464.0	NM_028833	74239.0	Mm.179704	NM_028833	ENSMUSG00000036555	Iqce	1700028P05Rik|mKIAA1023	IQ motif containing E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-14893923-4	chr3	14893418	14894418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357334, intron 3 of 7)	intron (NM_001357334, intron 3 of 7)	7630.0	NM_009801	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	0.0	10.0	4.5	0.0	11.0	3.0
Merged-chr13-43561246-4	chr13	43560753	43561753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-1062.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29111494-3	chr17	29110993	29111993	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17724.0	NM_007669	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	0.0	5.0	1.0	4.0	13.5	18.0
Merged-chr4-89137631-7	chr4	89137072	89138072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024433, intron 1 of 7)	CpG	202.0	NM_024433	66902.0	Mm.28500	NM_024433	ENSMUSG00000062937	Mtap	1300019I21Rik|MSAP	methylthioadenosine phosphorylase	protein-coding	33.0	55.0	64.5	32.0	73.5	48.5
Merged-chr18-3507864-4	chr18	3507400	3508400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026505)	promoter-TSS (NM_026505)	-57.0	NM_026505	68010.0	Mm.284863	NM_026505	ENSMUSG00000024232	Bambi	2610003H06Rik	BMP and activin membrane-bound inhibitor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-121391490-2	chr7	121390990	121391990	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081327)	promoter-TSS (NM_001081327)	-806.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164841552-2	chr2	164841052	164842052	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008906)	TTS (NM_008906)	7779.0	NM_008906	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17518686-4	chr10	17518191	17519191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-204537.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53250525-4	chr4	53250014	53251014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040665, intron 2 of 2)	MTEa|LTR|ERVL-MaLR	4318.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-86705621-4	chr10	86705132	86706132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011631)	promoter-TSS (NM_011631)	-179.0	NM_001003910	103220.0	Mm.440762	NM_153595	ENSMUSG00000044937	Ttc41	AI449705|AU041509|Gnn	tetratricopeptide repeat domain 41	protein-coding	2.5	24.0	19.5	2.5	27.0	19.5
Merged-chr13-100449667-4	chr13	100449158	100450158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008670, intron 1 of 15)	Lx8|LINE|L1	3206.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45219993-4	chr2	45219486	45220486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102544.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-57360948-4	chr19	57360422	57361422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040316)	promoter-TSS (NR_040316)	-23.0	NR_040316	320879.0	Mm.375089	NR_040316	ENSMUSG00000097785	B230217O12Rik	-	RIKEN cDNA B230217O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-56050098-4	chr7	56049582	56050582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010418)	promoter-TSS (NM_010418)	-73.0	NM_010418	15204.0	Mm.20929	NM_010418	ENSMUSG00000030451	Herc2	D15F32S1h|D7H15F32S1|D7H15F37S1|jdf2|mKIAA0393|rjs	HECT and RLD domain containing E3 ubiquitin protein ligase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106935663-4	chr8	106935146	106936146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009229)	promoter-TSS (NM_009229)	-104.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80109135-4	chr12	80108639	80109639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007564, exon 2 of 2)	3' UTR (NM_007564, exon 2 of 2)	3874.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	16.0	18.0	34.0	16.0	18.0	32.5
Merged-chr15-6341666-4	chr15	6341184	6342184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	41895.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96564830-4	chr3	96564305	96565305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040409, intron 1 of 3)	intron (NR_040409, intron 1 of 3)	1996.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108566750-4	chr6	108566246	108567246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56421.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	42.0	83.5	85.5	55.0	83.0	93.0
Merged-chr1-191094517-1	chr1	191094017	191095017	+	1000.0	f1_c57bl6.idr	Intergenic	B4|SINE|B4	-3897.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	13.5	16.5	38.5	13.0	36.0	27.0
Merged-chr12-35827082-4	chr12	35826591	35827591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98530.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	0.0	14.0	11.0	2.5	1.0	6.5
Merged-chr8-10840743-1	chr8	10840243	10841243	+	1000.0	f0_balb.idr	Intergenic	Intergenic	41711.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57467583-2	chr9	57467083	57468083	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301635, intron 1 of 5)	intron (NM_001301635, intron 1 of 5)	477.0	NM_001301634	56807.0	Mm.102278	NM_020270	ENSMUSG00000040722	Scamp5	Sc5	secretory carrier membrane protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-192537371-4	chr1	192536891	192537891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 11 of 11)	ORR1D2|LTR|ERVL-MaLR	233828.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	2.0	2.0	1.0	2.0	2.0	1.0
Merged-chr13-24831581-4	chr13	24831087	24832087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019551)	promoter-TSS (NM_019551)	-72.0	NM_019551	56196.0	Mm.427162	NM_019551	ENSMUSG00000035958	Tdp2	D13Ertd656e|Ttrap	tyrosyl-DNA phosphodiesterase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119181624-4	chr4	119181102	119182102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013848, intron 8 of 12)	intron (NM_013848, intron 8 of 12)	-7407.0	NM_001145936	195522.0	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	3.5	23.5	21.5	7.0	14.0	11.5
Merged-chr14-67933768-3	chr14	67933258	67934258	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177780)	promoter-TSS (NM_177780)	-186.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-63815301-4	chr13	63814826	63815826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023507)	promoter-TSS (NM_023507)	86.0	NM_023507	76251.0	Mm.186610	NM_023507	ENSMUSG00000021470	Ercc6l2	0610007P08Rik|1700019D06Rik|9330134C04Rik|Rad26l|Sr278	excision repair cross-complementing rodent repair deficiency, complementation group 6 like 2	protein-coding	169.5	446.0	356.0	109.5	287.5	212.0
Merged-chr8-121108401-4	chr8	121107901	121108901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166482)	promoter-TSS (NM_001166482)	-22.0	NM_001166482	234814.0	Mm.31690	NM_172761	ENSMUSG00000031816	Mthfsd	AW049977|BC052066|C920004D05	methenyltetrahydrofolate synthetase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55434092-4	chr12	55433579	55434579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35254.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-17902230-1	chr14	17901730	17902730	+	1000.0	f0_c57.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-79414.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	32.5	57.0	114.5	45.5	107.0	111.0
Merged-chr5-101934775-2	chr5	101934275	101935275	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 15 of 66)	intron (NM_172882, intron 15 of 66)	135146.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.5	0.0	0.0	0.0	0.0	0.5
Merged-chr2-69713546-4	chr2	69713028	69714028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177244)	promoter-TSS (NM_177244)	-922.0	NM_177244	320720.0	Mm.289566	NM_177244	ENSMUSG00000027086	Fastkd1	5330408N05Rik|mKIAA1800	FAST kinase domains 1	protein-coding	34.0	62.5	38.0	11.5	40.5	17.0
Merged-chr8-84237780-4	chr8	84237249	84238249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172503)	promoter-TSS (NM_172503)	-707.0	NM_172503	212168.0	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	95.5	234.0	190.5	103.0	292.5	160.5
Merged-chr10-117449925-4	chr10	117449443	117450443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-2508.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13837875-4	chr10	13837382	13838382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025446, intron 1 of 5)	intron (NM_025446, intron 1 of 5)	31075.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	11.0	40.0	30.5	28.0	104.0	75.0
Merged-chr2-30807774-4	chr2	30807267	30808267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356435)	promoter-TSS (NM_001356435)	-201.0	NM_001356435	66617.0	Mm.33167	NM_170592	ENSMUSG00000026857	Ntmt1	2610205E22Rik|AL033331|AL033332|Mettl11a|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-142006297-2	chr4	142005797	142006797	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 1 of 31)	intron (NM_177868, intron 1 of 31)	5354.0	NM_177868	329977.0	Mm.252019	NM_028429	ENSMUSG00000051435	Fhad1	2900090M10Rik|B230311F11	forkhead-associated (FHA) phosphopeptide binding domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85536766-2	chr12	85536266	85537266	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62339.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15704735-4	chr17	15704231	15705231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007690)	promoter-TSS (NM_007690)	-236.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180357908-4	chr1	180357413	180358413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-27364.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129820027-4	chr4	129819513	129820513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164745)	promoter-TSS (NM_001164745)	-466.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	75.5	206.0	162.0	66.0	154.5	173.5
Merged-chr6-15844665-2	chr6	15844165	15845165	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	124004.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13499627-5	chr10	13499141	13500141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1387.0	NM_001330198	66848.0	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115015656-4	chr6	115015142	115016142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026894, intron 5 of 7)	intron (NM_026894, intron 5 of 7)	22232.0	NM_026894	68971.0	Mm.24937	NM_026894	ENSMUSG00000030316	Tamm41	1500001M20Rik|TAM41	TAM41 mitochondrial translocator assembly and maintenance homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-105752214-4	chr7	105751717	105752717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009906)	promoter-TSS (NM_009906)	18.0	NM_009906	12751.0	Mm.20837	NM_009906	ENSMUSG00000030894	Tpp1	Cln2|LPIC|TPP-1|TPP-I	tripeptidyl peptidase I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83482623-4	chr6	83482133	83483133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149734, intron 4 of 6)	intron (NR_149734, intron 4 of 6)	24336.0	NM_013764	27369.0	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	9.0	22.0	16.5	9.5	26.0	12.5
Merged-chr10-12964434-4	chr10	12963884	12964884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029075)	promoter-TSS (NM_029075)	-125.0	NM_001163591	74732.0	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-12872398-2	chr7	12871898	12872898	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8780.0	NM_153802	243833.0	Mm.293823	NM_153802	ENSMUSG00000060397	Zfp128	9630016P15Rik|Znf8|mZnf8	zinc finger protein 128	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44347551-4	chr16	44347060	44348060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144550, intron 1 of 17)	CpG	159.0	NM_144550	212514.0	Mm.24035	NM_144550	ENSMUSG00000043065	Spice1	Ccdc52|D16Ertd480e	spindle and centriole associated protein 1	protein-coding	22.0	95.0	63.5	6.5	18.5	11.0
Merged-chr2-23015928-4	chr2	23015444	23016444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	intron (NM_001077190, intron 1 of 10)	24297.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45707747-4	chr7	45707227	45708227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016974, intron 2 of 3)	intron (NM_016974, intron 2 of 3)	2480.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	18.0	8.0	13.0	16.0	14.5	14.0
Merged-chr1-138292276-4	chr1	138291766	138292766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18528.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119394853-4	chr8	119394353	119395353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019966)	promoter-TSS (NM_019966)	-39.0	NM_019966	56690.0	Mm.423037	NM_019966	ENSMUSG00000074064	Mlycd	AI324784|Mcd	malonyl-CoA decarboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40559307-4	chr12	40558808	40559808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	113255.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55672234-4	chr14	55671719	55672719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177992)	promoter-TSS (NM_177992)	-16.0	NM_177992	105446.0	Mm.390685	NM_177992	ENSMUSG00000002326	Gmpr2	1810008P16Rik|5730544D12Rik|AA959850|GMPR 2	guanosine monophosphate reductase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66067338-4	chr5	66066851	66067851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	30828.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-144330517-4	chr1	144330012	144331012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81408.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-52360996-4	chr11	52360501	52361501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011694, exon 1 of 9)	5' UTR (NM_011694, exon 1 of 9)	139.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46762624-2	chr19	46762124	46763124	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_033569, exon 1 of 8)	exon (NM_033569, exon 1 of 8)	1015.0	NM_001102471	94219.0	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	0.0	1.0	0.5	1.0	4.5	12.0
Merged-chr14-57730050-4	chr14	57729561	57730561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153382, intron 1 of 1)	intron (NM_153382, intron 1 of 1)	4357.0	NM_153382	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141869814-8	chr4	141869273	141870273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	5147.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	61.0	128.5	57.0	43.0	71.5	71.0
Merged-chr10-117829907-4	chr10	117829364	117830364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	16110.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-39784091-4	chr15	39783611	39784611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164466, intron 9 of 9)	intron (NM_001164466, intron 9 of 9)	-12934.0	NR_045788	100503072.0	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	-	predicted gene 16291	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36472490-4	chr18	36471978	36472978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17983.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	38.5	79.5	62.5	36.5	84.5	59.5
Merged-chr8-126866429-2	chr8	126865929	126866929	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17409.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-15049319-4	chr2	15048815	15049815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165942)	promoter-TSS (NM_001165942)	-3.0	NM_001355685	74455.0	Mm.478923	NM_028950	ENSMUSG00000026707	Nsun6	4933403D21Rik|4933414E04Rik|NOPD1	NOL1/NOP2/Sun domain family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67373266-4	chr7	67372761	67373761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291191)	promoter-TSS (NM_001291191)	-403.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-85380678-4	chr6	85380176	85381176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6042.0	NM_001003955	52055.0	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-98666870-1	chr2	98666370	98667370	+	1000.0	f0_balb.idr	Intergenic	GSAT_MM|Satellite|Satellite	1199213.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141766578-4	chr4	141766093	141767093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172338, intron 12 of 14)	intron (NM_172338, intron 12 of 14)	19918.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	123.0	324.5	187.0	72.5	166.0	128.0
Merged-chr1-88267281-4	chr1	88266789	88267789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172505, intron 4 of 4)	intron (NM_172505, intron 4 of 4)	2119.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83291648-4	chr11	83291158	83292158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028363)	promoter-TSS (NR_028363)	-41.0	NR_028363	613254.0	Mm.383758	NR_028363	ENSMUSG00000093483	AA465934	-	expressed sequence AA465934	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117342876-4	chr2	117342364	117343364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011246)	promoter-TSS (NM_011246)	13.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-32932650-3	chr14	32932151	32933151	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178791, intron 7 of 7)	intron (NM_178791, intron 7 of 7)	-58731.0	NM_001146021	67580.0	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18244943-2	chr16	18244443	18245443	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011239, intron 3 of 5)	intron (NM_011239, intron 3 of 5)	3751.0	NM_011239	19385.0	Mm.235287	NM_011239	ENSMUSG00000005732	Ranbp1	Htf9a	RAN binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-26581627-4	chr16	26581147	26582147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134103)	promoter-TSS (NM_134103)	-58.0	NM_001159318	16180.0	Mm.253424	NM_008364	ENSMUSG00000022514	Il1rap	6430709H04Rik|AI255955|AV239853|IL-1RAcP	interleukin 1 receptor accessory protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87283997-4	chr17	87283475	87284475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 1 of 19)	intron (NM_028639, intron 1 of 19)	1089.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81704301-1	chr15	81703801	81704801	+	1000.0	f1_c57bl6.idr	TTS (NM_001146174)	TTS (NM_001146174)	-7014.0	NM_001164320	214685.0	Mm.393287	NM_001164320	ENSMUSG00000063765	Chadl	AY100452|D930017K21Rik	chondroadherin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54682255-2	chr6	54681757	54682757	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289741, intron 1 of 4)	CpG	633.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	5.0	8.5	3.0	2.5	3.0	1.0
Merged-chr2-158133246-4	chr2	158132744	158133744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 4 of 12)	intron (NM_009373, intron 4 of 12)	13148.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139150881-2	chr5	139150381	139151381	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359097)	promoter-TSS (NM_001359097)	-178.0	NM_001359101	19085.0	Mm.306163	NM_008923	ENSMUSG00000025855	Prkar1b	AI385716|RIbeta	protein kinase, cAMP dependent regulatory, type I beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167885769-4	chr2	167885288	167886288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46539.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124579097-4	chr5	124578619	124579619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181410)	promoter-TSS (NM_181410)	12.0	NM_145371	209354.0	Mm.28839	NM_145371	ENSMUSG00000029388	Eif2b1	D5Ertd406e|EIF2BA	eukaryotic translation initiation factor 2B, subunit 1 (alpha)	protein-coding	10.0	29.0	15.5	8.0	26.0	13.5
Merged-chr8-25597580-4	chr8	25597087	25598087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173012)	promoter-TSS (NM_173012)	-100.0	NM_173012	270035.0	Mm.268349	NM_173012	ENSMUSG00000037363	Letm2	6030453H13|D030041N04Rik	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding	35.0	83.0	86.0	35.5	113.5	84.5
Merged-chr17-67352212-2	chr17	67351712	67352712	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	2247.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67958240-4	chr7	67957744	67958744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 1 of 20)	intron (NM_010513, intron 1 of 20)	5987.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-43411610-4	chr11	43411123	43412123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14358.0	NM_013917	30939.0	Mm.6856	NM_013917	ENSMUSG00000020415	Pttg1	AW555095|C87862|Pttg|Pttg3	pituitary tumor-transforming gene 1	protein-coding	0.0	0.0	0.0	1.5	2.0	1.5
Merged-chr6-122863069-4	chr6	122862569	122863569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-6912.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26697801-4	chr8	26697296	26698296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	126627.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	113.5	307.5	242.0	94.5	258.0	168.5
Merged-chr5-105496387-4	chr5	105495890	105496890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23081.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	1.5	11.5	2.0	4.5	44.5	12.0
Merged-chr9-70943209-2	chr9	70942709	70943709	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001324472, intron 1 of 9)	MTEa|LTR|ERVL-MaLR	-8401.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-28751801-4	chr12	28751236	28752236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201357)	promoter-TSS (NM_201357)	-92.0	NM_201357	380752.0	Mm.273724	NM_201357	ENSMUSG00000036613	Eipr1	D12Ertd604e|Tssc1	EARP complex and GARP complex interacting protein 1	protein-coding	93.0	290.0	223.5	56.0	188.5	121.0
Merged-chr16-94604525-2	chr16	94604025	94605025	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-6894.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-105628812-4	chr7	105628304	105629304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018880, intron 1 of 11)	intron (NM_018880, intron 1 of 11)	4767.0	NM_018880	55992.0	Mm.29290	NM_018880	ENSMUSG00000036989	Trim3	BERP1|HAC1|Rnf22	tripartite motif-containing 3	protein-coding	5.0	15.5	5.0	3.5	7.5	9.0
Merged-chr2-148490768-4	chr2	148490272	148491272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47237.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34780677-7	chr6	34780112	34781112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001289657, exon 1 of 19)	5' UTR (NM_001289657, exon 1 of 19)	180.0	NM_001289656	76223.0	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61861591-4	chr14	61861099	61862099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-179226.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23666371-1	chr11	23665871	23666871	+	1000.0	f0_c57.idr	promoter-TSS (NM_023651)	promoter-TSS (NM_023651)	395.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-4080040-4	chr10	4079530	4080530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 20 of 27)	intron (NM_001170785, intron 20 of 27)	106955.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67464799-4	chr7	67464298	67465298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91940.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	40.5	102.0	70.0	26.0	71.0	62.5
Merged-chr7-45592002-4	chr7	45591494	45592494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-16818.0	NR_038165	71661.0	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98022719-4	chr11	98022227	98023227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031173)	promoter-TSS (NM_031173)	-100.0	NM_001282978	12295.0	Mm.41252	NM_031173	ENSMUSG00000020882	Cacnb1	CAB1|Cchb1|Cchlb1	calcium channel, voltage-dependent, beta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9133847-4	chr4	9133347	9134347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-135446.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr10-117836562-4	chr10	117836054	117837054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	B3A|SINE|B2	9420.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122289061-4	chr7	122288550	122289550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008855)	promoter-TSS (NM_008855)	-75.0	NM_001316672	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37427411-4	chr1	37426906	37427906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198006, intron 2 of 2)	GA-rich|Low_complexity|Low_complexity	2697.0	NM_198006	76178.0	Mm.28085	NM_198006	ENSMUSG00000026112	Coa5	1700001A24Rik|6330578E17Rik|Pet191	cytochrome C oxidase assembly factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-56610434-2	chr13	56609934	56610934	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155548, intron 1 of 16)	intron (NR_155548, intron 1 of 16)	848.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118541053-4	chr2	118540553	118541553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331221, intron 3 of 3)	intron (NM_001331221, intron 3 of 3)	3534.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	128.5	250.0	173.5	72.5	128.0	138.0
Merged-chr9-21526166-4	chr9	21525683	21526683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_206536)	promoter-TSS (NM_206536)	6.0	NM_206536	382062.0	Mm.325205	NM_206536	ENSMUSG00000057191	AB124611	Gm1706	cDNA sequence AB124611	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-37972845-4	chr15	37972346	37973346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001112721, intron 56 of 58)	intron (NM_001112721, intron 56 of 58)	-11791.0	NM_199476	382985.0	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34906537-2	chr2	34906037	34907037	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028716, exon 5 of 15)	exon (NM_028716, exon 5 of 15)	7439.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77938034-2	chr10	77937534	77938534	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_138301, exon 13 of 34)	exon (NM_138301, exon 13 of 34)	31838.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-33782351-1	chr5	33781851	33782851	+	1000.0	f0_balb.idr	intron (NM_019694, intron 1 of 13)	CpG	353.0	NM_019694	56384.0	Mm.260538	NM_019694	ENSMUSG00000005299	Letm1	-	leucine zipper-EF-hand containing transmembrane protein 1	protein-coding	4.0	28.5	15.5	6.5	12.5	20.0
Merged-chr5-110107750-4	chr5	110107237	110108237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145147, intron 1 of 9)	CpG-11316	460.0	NM_145147	107999.0	Mm.86267	NM_145147	ENSMUSG00000033434	Gtpbp6	AV119224|Pgbpll|pgpl	GTP binding protein 6 (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91041795-4	chr1	91041296	91042296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-11648.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120634021-3	chr11	120633492	120634492	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010756)	promoter-TSS (NM_010756)	-445.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	54.0	76.5	72.5	50.5	79.5	77.0
Merged-chr8-103941096-4	chr8	103940602	103941602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-160523.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40557899-4	chr12	40557395	40558395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	111842.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27774798-2	chr2	27774298	27775298	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64215.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-66040023-2	chr18	66039523	66040523	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37388.0	NM_001172062	70361.0	Mm.290857	NM_027400	ENSMUSG00000041891	Lman1	2610020P13Rik|AI326273|AU043785|C730041J05|ERGIC53|F5F8D|MCFD1|MR60|P58|gp58	lectin, mannose-binding, 1	protein-coding	1.5	0.0	0.5	4.5	0.0	1.5
Merged-chr3-89233624-4	chr3	89233115	89234115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_183037)	TTS (NM_183037)	4559.0	NM_013605	17829.0	Mm.16193	NM_013605	ENSMUSG00000042784	Muc1	CD227|EMA|Muc-1	mucin 1, transmembrane	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58008746-4	chr11	58008238	58009238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028451)	promoter-TSS (NM_028451)	-326.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54039925-4	chr6	54039431	54040431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163640)	promoter-TSS (NM_001163640)	-1.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	6.0	3.0	0.0	2.0	7.5	4.5
Merged-chr1-193173552-4	chr1	193173051	193174051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181048)	promoter-TSS (NM_181048)	-26.0	NM_001160359	319266.0	Mm.482460	NM_181048	ENSMUSG00000079144	A130010J15Rik	-	RIKEN cDNA A130010J15 gene	protein-coding	43.5	99.5	99.5	30.5	90.0	52.5
Merged-chr9-121675133-3	chr9	121674635	121675635	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	29894.0	NM_178677	215474.0	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	2.5	3.0	8.5	0.0	0.0	1.5
Merged-chr15-55112344-4	chr15	55111832	55112832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145470)	promoter-TSS (NM_145470)	15.0	NM_145470	97998.0	Mm.295397	NM_145470	ENSMUSG00000022419	Deptor	Depdc6	DEP domain containing MTOR-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37679010-4	chr13	37678505	37679505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147033.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62076913-4	chr11	62076412	62077412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029936)	promoter-TSS (NM_001029936)	-112.0	NM_001029936	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69667552-4	chr3	69667069	69668069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-54486.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	15.0	35.5	28.0	26.5	44.5	25.0
Merged-chr15-59807951-4	chr15	59807453	59808453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12994.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	49.0	101.0	111.5	57.0	106.5	96.0
Merged-chr1-46854129-1	chr1	46853629	46854629	+	1000.0	f0_c57.idr	promoter-TSS (NM_172653)	promoter-TSS (NM_172653)	-511.0	NM_172653	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43869390-4	chr5	43868851	43869851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	542.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	72.0	108.0	109.0	88.0	122.0	98.0
Merged-chr1-66700837-4	chr1	66700365	66701365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025683)	promoter-TSS (NM_025683)	34.0	NM_001310644	66646.0	Mm.240912	NM_025683	ENSMUSG00000026005	Rpe	2810429B02Rik|5730518J08Rik	ribulose-5-phosphate-3-epimerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25485702-4	chr9	25485197	25486197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	4100.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70753851-2	chr8	70753351	70754351	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009001)	promoter-TSS (NM_009001)	-828.0	NM_001328047	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108555310-2	chr3	108554810	108555810	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028538)	promoter-TSS (NR_028538)	-908.0	NR_028538	100217438.0		NR_028538		Scarna2	MBII-382	small Cajal body-specific RNA 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-114133883-3	chr8	114133395	114134395	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001290181, exon 1 of 4)	5' UTR (NM_001290181, exon 1 of 4)	321.0	NM_024437	67528.0	Mm.27889	NM_024437	ENSMUSG00000031767	Nudt7	1300007B24Rik|2210404C19Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 7	protein-coding	3.5	3.0	3.5	2.0	5.0	6.5
Merged-chr13-43787462-2	chr13	43786962	43787962	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	2350.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39207531-2	chr6	39206999	39207999	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001033430)	promoter-TSS (NM_001033430)	-726.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-62623389-4	chr17	62622889	62623889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010109, intron 2 of 3)	intron (NM_010109, intron 2 of 3)	257928.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109778531-4	chr8	109778029	109779029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009677)	promoter-TSS (NM_009677)	-54.0	NM_009677	11765.0	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding	28.5	61.5	28.5	16.0	69.5	43.5
Merged-chr8-95081023-4	chr8	95080507	95081507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028805)	promoter-TSS (NM_028805)	-194.0	NM_028805	74187.0	Mm.28382	NM_028805	ENSMUSG00000031787	Katnb1	2410003J24Rik|KAT	katanin p80 (WD40-containing) subunit B 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42190560-2	chr19	42190060	42191060	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177319, exon 13 of 13)	3' UTR (NM_177319, exon 13 of 13)	11692.0	NM_018780	54612.0	Mm.470071	NM_018780	ENSMUSG00000018822	Sfrp5	AI605071|SARP3	secreted frizzled-related sequence protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27630456-1	chr17	27629956	27630956	+	1000.0	f1_c57bl6.idr	TTS (NM_025963)	TTS (NM_025963)	4786.0	NM_025963	67097.0	Mm.275810	NM_025963	ENSMUSG00000052146	Rps10	2210402A09Rik	ribosomal protein S10	protein-coding	0.0	0.0	2.5	0.0	0.0	1.5
Merged-chr13-110672798-2	chr13	110672298	110673298	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-230701.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	9.5	4.0	2.0	0.0	0.0	3.0
Merged-chr4-116651559-4	chr4	116650967	116651967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021473, exon 1 of 9)	5' UTR (NM_021473, exon 1 of 9)	207.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101264727-1	chr4	101264227	101265227	+	1000.0	f0_balb.idr	intron (NM_146145, intron 1 of 24)	CpG	555.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-82798531-4	chr1	82798029	82799029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30073.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-28953868-4	chr13	28953362	28954362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009238)	promoter-TSS (NM_009238)	-163.0	NM_009238	20677.0	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146110585-4	chr3	146110098	146111098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GAAA)n|Simple_repeat|Simple_repeat	-2562.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	15.0	75.5	62.5	92.5	232.0	160.0
Merged-chr11-114789371-4	chr11	114788913	114789913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001102615, exon 18 of 20)	exon (NM_001102615, exon 18 of 20)	6479.0	NM_028055	72014.0	Mm.38347	NM_028055	ENSMUSG00000000202	Btbd17	1500005I02Rik|Tango10a	BTB (POZ) domain containing 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50210277-4	chr11	50209802	50210802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290769, intron 1 of 7)	CpG	518.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141558760-4	chr4	141558269	141559269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12607.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138619705-3	chr1	138619210	138620210	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311148)	promoter-TSS (NM_001311148)	47.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94405680-4	chr10	94405156	94406156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	L2c|LINE|L2	93707.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75139792-2	chr11	75139292	75140292	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 14 of 18)	intron (NM_001002764, intron 14 of 18)	28360.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80929920-4	chr10	80929402	80930402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008655)	promoter-TSS (NM_008655)	-189.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-37359253-4	chr2	37358766	37359766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026176)	promoter-TSS (NM_026176)	66.0	NM_026176	67466.0	Mm.30709	NM_026176	ENSMUSG00000009030	Pdcl	1200011E13Rik|AW108059|PhLP1	phosducin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23895236-4	chr11	23894753	23895753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172555)	promoter-TSS (NM_172555)	17.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-29772794-4	chr16	29772345	29773345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	193511.0	NM_001199177	74143.0	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	13.0	14.5	22.5	5.0	22.0	9.0
Merged-chr6-56804668-2	chr6	56804168	56805168	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-6855.0	NM_001362213	210973.0	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92715640-4	chr16	92715137	92716137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-18308.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-74770667-4	chr13	74770167	74771167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301156)	promoter-TSS (NM_001301156)	69.0	NM_001301156	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	40.0	45.5	29.5	15.5	50.5	29.0
Merged-chr7-127776537-4	chr7	127776048	127777048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178029)	promoter-TSS (NM_178029)	-841.0	NM_178029	233904.0	Mm.435494	NM_010940	ENSMUSG00000042308	Setd1a	BC010250|KMT2F|Nsccn1|mKIAA0339|mNSC1	SET domain containing 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57486821-4	chr10	57486267	57487267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045353)	promoter-TSS (NR_045353)	382.0	NM_008297	15500.0	Mm.261395	NM_008297	ENSMUSG00000019878	Hsf2	AI661205	heat shock factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-86065173-4	chr10	86064672	86065672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013722, intron 10 of 13)	intron (NM_013722, intron 10 of 13)	-30682.0	NR_038024	78170.0	Mm.444790	NR_038024	ENSMUSG00000112493	4930486F22Rik	-	RIKEN cDNA 4930486F22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86972506-2	chr17	86972006	86973006	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	9395.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	7.0	5.0	10.0	1.5	6.5	1.5
Merged-chr2-12406886-4	chr2	12406387	12407387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355537, intron 2 of 13)	intron (NM_001355537, intron 2 of 13)	12573.0	NM_001355537	66960.0	Mm.34059	NM_024185	ENSMUSG00000026767	Mindy3	1810041E18Rik|2310047O13Rik|5830410F13Rik|AI447827|AW111958|Fam188a	MINDY lysine 48 deubiquitinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29673028-4	chr2	29672534	29673534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	53314.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-46819514-4	chr12	46819015	46820015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021361)	promoter-TSS (NM_021361)	-740.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93711153-4	chr16	93710674	93711674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026700)	promoter-TSS (NM_026700)	-733.0	NM_026700	70028.0	Mm.23230	NM_026700	ENSMUSG00000022946	Dopey2	0610038M01Rik|2610510B01Rik|AI503246|C21orf5|mKIAA0933	dopey family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-55944956-3	chr17	55944459	55945459	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310337, intron 1 of 3)	intron (NM_001310337, intron 1 of 3)	300.0	NM_146249	240120.0	Mm.441018	NM_146249	ENSMUSG00000062101	Zfp119b	-	zinc finger protein 119b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83577231-4	chr11	83576726	83577726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011338, intron 1 of 3)	intron (NM_011338, intron 1 of 3)	1410.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81365859-4	chr10	81365353	81366353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001014836)	promoter-TSS (NM_001014836)	-33.0	NM_001014836	432479.0	Mm.440450	NM_001014836	ENSMUSG00000020234	4930404N11Rik	2210409H10Rik|5730551K18Rik|AI854616	RIKEN cDNA 4930404N11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85140172-4	chr11	85139668	85140668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029934)	promoter-TSS (NM_001029934)	-213.0	NM_001029934	237898.0	Mm.178524	NM_001029934	ENSMUSG00000000804	Usp32	2900074J03Rik|6430526O11Rik|AW045245	ubiquitin specific peptidase 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83473070-4	chr11	83472613	83473613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027427)	promoter-TSS (NM_027427)	5.0	NM_027427	70439.0	Mm.181050	NM_027427	ENSMUSG00000020680	Taf15	2610111C21Rik|68kDa|TAFII68|Taf2n	TATA-box binding protein associated factor 15	protein-coding	1.5	31.0	12.0	12.0	24.5	10.0
Merged-chr6-97441648-4	chr6	97441134	97442134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	17652.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-36074748-4	chr13	36074249	36075249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201358, intron 2 of 2)	MTD|LTR|ERVL-MaLR	42608.0	NM_201358	380840.0	Mm.390576	NM_201358	ENSMUSG00000046573	Lyrm4	BC034664|Gm903	LYR motif containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr13-23684094-4	chr13	23683604	23684604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178189)	promoter-TSS (NM_178189)	-95.0	NM_001290380	68024.0	Mm.261676	NM_023422	ENSMUSG00000018102	Hist1h2bc	2610022J01Rik|H2bfs|R74621	histone cluster 1, H2bc	protein-coding	38.0	164.5	104.5	66.5	127.0	84.0
Merged-chr4-154878024-4	chr4	154877524	154878524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013783, intron 2 of 23)	ORR1E|LTR|ERVL-MaLR	-6021.0	NR_154548	102634887.0	Mm.72944	NR_154548		Gm13112	-	predicted gene 13112	ncRNA	4.5	7.5	9.0	2.0	5.0	0.5
Merged-chr9-65215139-4	chr9	65214624	65215624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177460, intron 1 of 6)	intron (NM_177460, intron 1 of 6)	434.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46511436-4	chr19	46510936	46511936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	9788.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	30.5	126.0	101.5	53.5	134.0	95.0
Merged-chr14-56778449-4	chr14	56778012	56779012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360420)	promoter-TSS (NM_001360420)	-194.0	NM_025682	66645.0	Mm.20129	NM_025682	ENSMUSG00000021938	Pspc1	5730470C09Rik|AI327109|AI449052|PSP1	paraspeckle protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-19980011-4	chr8	19979508	19980508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270553, intron 6 of 9)	CpG	250432.0	NM_001039553	626415.0	Mm.425517	NM_001039553	ENSMUSG00000096265	4930467E23Rik	TSAP	RIKEN cDNA 4930467E23 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-105369059-4	chr11	105368541	105369541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172568, intron 10 of 11)	intron (NM_172568, intron 10 of 11)	76395.0	NM_008626	17534.0	Mm.235616	NM_008626	ENSMUSG00000020695	Mrc2	Endo180|mKIAA0709|uPARAP	mannose receptor, C type 2	protein-coding	0.0	0.0	0.5	0.0	0.5	0.0
Merged-chr14-26638031-4	chr14	26637529	26638529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007479)	promoter-TSS (NM_007479)	-105.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-79549635-4	chr14	79549137	79550137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 2 of 8)	intron (NM_007920, intron 2 of 8)	33963.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78983553-4	chr15	78983059	78984059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024716, intron 1 of 13)	intron (NM_001024716, intron 1 of 13)	503.0	NM_001024716	110253.0	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102252734-4	chr12	102252234	102253234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172152, intron 12 of 16)	intron (NM_172152, intron 12 of 16)	-30340.0	NM_177620	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180942402-4	chr1	180941876	180942876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144794)	promoter-TSS (NM_144794)	-142.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4943421-4	chr7	4942897	4943897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173008, intron 13 of 13)	intron (NM_173008, intron 13 of 13)	17553.0	NM_173008	269855.0	Mm.44190	NM_173008	ENSMUSG00000035279	Ssc5d	A430110N23Rik|S5D-SRCRB	scavenger receptor cysteine rich family, 5 domains	protein-coding	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128437275-3	chr2	128436762	128437762	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-7911.0	NR_028590	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	12.0	1.0	0.0	4.0	11.0	3.0
Merged-chr15-59743073-4	chr15	59742563	59743563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51896.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-67269123-4	chr13	67268640	67269640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155551)	promoter-TSS (NR_155551)	-72.0	NM_001001152	238690.0	Mm.306358	NM_001001152	ENSMUSG00000055480	Zfp458	BC062958|Gm33446|Rslcan-7|Znf728|mszf59-2	zinc finger protein 458	protein-coding	62.0	198.5	167.0	132.0	238.0	200.5
Merged-chr13-12565776-4	chr13	12565274	12566274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026184)	promoter-TSS (NM_026184)	-109.0	NM_026184	67475.0	Mm.358706	NM_026184	ENSMUSG00000057069	Ero1lb	1300013B24Rik|1700065B09Rik|AI447560|Ero1b|ero1-beta	ERO1-like beta (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-76140479-5	chr5	76139967	76140967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020611, exon 1 of 6)	exon (NM_020611, exon 1 of 6)	194.0	NM_020611	57357.0	Mm.289446	NM_020611	ENSMUSG00000029233	Srd5a3	1110025P14Rik|A430076C09|AV364670|AW987574|D730040M03Rik|H5ar|S5AR 3|Srd5a2l	steroid 5 alpha-reductase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-51931407-2	chr2	51930907	51931907	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355608, intron 1 of 3)	intron (NM_001355608, intron 1 of 3)	1928.0	NM_001355607	71684.0	Mm.28309	NM_030243	ENSMUSG00000036249	Rbm43	0610033I05Rik	RNA binding motif protein 43	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11192947-4	chr2	11192437	11193437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	20555.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-47917867-4	chr8	47917370	47918370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133791, intron 2 of 22)	intron (NM_133791, intron 2 of 22)	72681.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-49755622-4	chr18	49755107	49756107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170960)	promoter-TSS (NM_001170960)	-6.0	NM_026854	68857.0	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75902132-2	chr18	75901663	75902663	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145356, intron 2 of 4)	intron (NM_145356, intron 2 of 4)	81985.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	36.5	113.5	79.5	2.5	10.5	4.0
Merged-chr7-88250579-4	chr7	88250083	88251083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-27502.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150827345-2	chr2	150826845	150827845	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153781, intron 17 of 19)	intron (NM_153781, intron 17 of 19)	15225.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6086008-4	chr2	6085440	6086440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44245.0	NM_144883	227545.0	Mm.133542	NM_144883	ENSMUSG00000045319	Proser2	5430407P10Rik|AU067770	proline and serine rich 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21313411-4	chr9	21312906	21313906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1073.0	NM_009678	11768.0	Mm.22239	NM_009678	ENSMUSG00000003309	Ap1m2	D9Ertd818e|[m]1B|mu1B	adaptor protein complex AP-1, mu 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113594575-4	chr5	113594084	113595084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44164.0	NM_177292	320916.0	Mm.102783	NM_177292	ENSMUSG00000063430	Wscd2	4933413A10Rik|C530024P05Rik|Gm450	WSC domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104523784-4	chr3	104523267	104524267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11849.0	NM_001310698	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	15.0	28.0	10.0	10.0	6.5	11.5
Merged-chr11-94548465-4	chr11	94547967	94548967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013381, intron 2 of 8)	intron (NM_001013381, intron 2 of 8)	740.0	NM_001013381	237926.0	Mm.342275	NM_001013381	ENSMUSG00000039096	Rsad1	B430319G23|BC056485	radical S-adenosyl methionine domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21104583-4	chr19	21104078	21105078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126458)	promoter-TSS (NR_126458)	-132.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	6.5	10.0	13.5	16.5	13.0	31.5
Merged-chr13-56353417-4	chr13	56352912	56353912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9488.0	NR_046061	100038494.0	Mm.370447	NR_046061	ENSMUSG00000074885	Gm10782	-	predicted gene 10782	ncRNA	52.5	95.0	95.5	67.5	149.5	113.5
Merged-chr8-71488637-4	chr8	71488136	71489136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_032544, exon 1 of 9)	5' UTR (NM_032544, exon 1 of 9)	533.0	NM_032544	70359.0	Mm.142112	NM_032544	ENSMUSG00000007610	Gtpbp3	2410009F13Rik|AI607903	GTP binding protein 3	protein-coding	4.5	23.0	43.5	18.5	32.0	33.0
Merged-chr12-33429537-4	chr12	33429029	33430029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172253)	promoter-TSS (NM_172253)	-95.0	NM_172253	28071.0	Mm.196472	NM_172253	ENSMUSG00000020561	Twistnb	2410173G11|2810024J17Rik|D16Wsu83e	twist basic helix-loop-helix transcription factor 1 neighbor	protein-coding	83.5	92.0	90.5	34.0	136.0	53.0
Merged-chr10-87910834-4	chr10	87910326	87911326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111274, intron 2 of 4)	intron (NM_001111274, intron 2 of 4)	49715.0	NM_001111276	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119742266-4	chr2	119741760	119742760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146125)	promoter-TSS (NM_146125)	-77.0	NM_146125	228550.0	Mm.65337	NM_146125	ENSMUSG00000027296	Itpka	-	inositol 1,4,5-trisphosphate 3-kinase A	protein-coding	3.5	29.0	22.5	27.0	28.0	26.5
Merged-chr16-22121372-4	chr16	22120894	22121894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	L1MA5|LINE|L1	41905.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26509215-2	chr17	26508715	26509715	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013642)	promoter-TSS (NM_013642)	-743.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-149031393-4	chr5	149030890	149031890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	20226.0	NM_001313894	15289.0	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	16.5	21.5	38.0	0.0	9.5	6.5
Merged-chr7-30419659-4	chr7	30419157	30420157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011827, intron 1 of 3)	intron (NM_011827, intron 1 of 3)	197.0	NM_011827	23900.0	Mm.379050	NM_011827	ENSMUSG00000064109	Hcst	DAP10|KAP10	hematopoietic cell signal transducer	protein-coding	80.5	187.0	174.5	53.0	218.0	104.5
Merged-chr6-6577803-4	chr6	6577311	6578311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009169, intron 1 of 2)	MIRb|SINE|MIR	847.0	NM_009169	20422.0	Mm.2469	NM_009169	ENSMUSG00000042541	Sem1	DSS1|Shfdg1|Shfg|Shfm1	SEM1, 26S proteasome complex subunit	protein-coding	199.5	510.0	361.0	174.5	442.5	303.0
Merged-chr11-86580591-5	chr11	86580150	86581150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3508.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67579995-4	chr10	67579454	67580454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7995.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88223020-2	chr1	88222520	88223520	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-4000.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57690364-4	chr10	57689859	57690859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039050, intron 2 of 4)	intron (NM_001039050, intron 2 of 4)	39378.0	NM_001190402	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35209944-2	chr17	35209448	35210448	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-4597.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-12856118-1	chr10	12855618	12856618	+	1000.0	f0_balb.idr	intron (NM_011682, intron 1 of 73)	MLTR11A|LTR|ERVK	5617.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.0	0.0	1.0	0.0	17.5	1.0
Merged-chr13-37541858-4	chr13	37541371	37542371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	196526.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	9.5	23.5	16.5	0.5	2.5	1.5
Merged-chr1-191097264-4	chr1	191096755	191097755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1159.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	5.0	14.0	3.5	9.0	15.5	7.5
Merged-chr16-21318449-4	chr16	21317931	21318931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14925.0	NR_131983	76222.0	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103543555-4	chr14	103543052	103544052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022886, intron 7 of 30)	intron (NM_022886, intron 7 of 30)	30211.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11588157-4	chr2	11587626	11588626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152824, intron 8 of 11)	MTE2a|LTR|ERVL-MaLR	15073.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122101881-4	chr7	122101369	122102369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028177)	promoter-TSS (NM_028177)	-21.0	NM_028177	70316.0	Mm.3014	NM_028177	ENSMUSG00000030869	Ndufab1	2210401F17Rik|2310039H15Rik|2610003B19Rik|8kDa|9130423F15Rik|ACP|CI-SDAP|SDAP	NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129513605-4	chr4	129513109	129514109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010807)	promoter-TSS (NM_010807)	28.0	NM_010807	17357.0	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	40.0	103.0	65.5	54.5	161.0	85.5
Merged-chr13-111808403-8	chr13	111807830	111808830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	CpG	663.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110269908-4	chr5	110269431	110270431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163538)	promoter-TSS (NM_001163538)	-32.0	NM_001163538	72542.0	Mm.61682	NM_028273	ENSMUSG00000029500	Pgam5	2610528A17Rik	phosphoglycerate mutase family member 5	protein-coding	11.0	60.5	34.5	28.5	31.5	54.5
Merged-chr1-176824662-4	chr1	176824168	176825168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 1 of 18)	intron (NM_001357390, intron 1 of 18)	10008.0	NM_029756	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	102.5	191.0	134.0	36.5	117.0	117.5
Merged-chr7-43607140-4	chr7	43606651	43607651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028913)	promoter-TSS (NM_028913)	-18.0	NM_001355131	74400.0	Mm.159188	NM_028913	ENSMUSG00000055102	Zfp819	4930427I11Rik|4933405K07Rik	zinc finger protein 819	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-105484513-4	chr9	105484027	105485027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253831, intron 1 of 26)	L1MB7|LINE|L1	10606.0	NM_175025	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	21.5	51.5	21.5	19.0	59.0	18.5
Merged-chr4-141664187-4	chr4	141663686	141664686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033150)	promoter-TSS (NM_001033150)	-71.0	NM_001033150	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	43.0	121.5	98.0	43.0	141.0	104.5
Merged-chr2-167800237-4	chr2	167799743	167800743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	109066.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-50592679-4	chr10	50592195	50593195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198007)	promoter-TSS (NM_198007)	26.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167353608-2	chr2	167353108	167354108	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4430.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-28032068-5	chr3	28031433	28032433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 6 of 25)	intron (NM_008875, intron 6 of 25)	47762.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127288846-4	chr10	127288359	127289359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_033072, exon 1 of 13)	5' UTR (NM_033072, exon 1 of 13)	159.0	NM_001347171	110962.0	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	10.5	16.0	22.5	12.5	18.5	11.5
Merged-chr11-115657540-2	chr11	115657022	115658022	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	-29227.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117976777-4	chr5	117976292	117977292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145564)	promoter-TSS (NM_145564)	22.0	NM_001346588	231670.0	Mm.21912	NM_145564	ENSMUSG00000032898	Fbxo21	2810425J22Rik|AU016673	F-box protein 21	protein-coding	1.0	5.5	6.0	2.0	1.5	6.0
Merged-chr18-23844764-4	chr18	23844258	23845258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 3 of 7)	intron (NM_001162941, intron 3 of 7)	40788.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30496036-4	chr2	30495507	30496507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21808.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-24553616-4	chr1	24553118	24554118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007733, intron 4 of 50)	intron (NM_007733, intron 4 of 50)	33819.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-48974910-2	chr13	48974410	48975410	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6798.0	NR_015601	68128.0	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-24422265-4	chr8	24421740	24422740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16706.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	1.0	21.5	11.0	6.5	22.5	5.5
Merged-chr17-27008495-4	chr17	27008008	27009008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20A|LTR|ERVK	-9527.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0.0	11.0	7.0	0.0	7.0	6.0
Merged-chr19-5491459-4	chr19	5490964	5491964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007687, intron 1 of 3)	intron (NM_007687, intron 1 of 3)	1009.0	NM_007687	12631.0	Mm.329655	NM_007687	ENSMUSG00000056201	Cfl1	AA959946|Cof	cofilin 1, non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76225342-4	chr16	76224844	76225844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102731.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-16472469-2	chr5	16471969	16472969	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81026.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4189307-4	chr11	4188800	4189800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	2467.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44314583-4	chr19	44314089	44315089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11418.0	NR_039574	100628619.0		NR_039574	ENSMUSG00000093315	Mir5114	mmu-mir-5114|mu-mir-5114	microRNA 5114	ncRNA	131.0	484.5	362.0	137.5	418.0	323.5
Merged-chr1-92676889-2	chr1	92676389	92677389	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28048.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-35155618-2	chr4	35155118	35156118	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	1866.0	NM_178061	214944.0	Mm.32968	NM_178061	ENSMUSG00000073910	Mob3b	8430436F23Rik|A430018A01Rik|Mobkl2b	MOB kinase activator 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-105841259-4	chr10	105840747	105841747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025602)	promoter-TSS (NM_025602)	133.0	NM_001359642	216292.0	Mm.250875	NM_207522	ENSMUSG00000036009	Mettl25	-	methyltransferase like 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170136577-4	chr1	170136087	170137087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38377.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-160792945-4	chr1	160792460	160793460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013862)	promoter-TSS (NM_013862)	-22.0	NM_013862	29809.0	Mm.25833	NM_013862	ENSMUSG00000026721	Rabgap1l	5830411O09Rik|8430421H08Rik|9630005B12Rik|AW049894|HHL|Hh1|mKIAA0471	RAB GTPase activating protein 1-like	protein-coding	0.0	0.0	2.0	0.0	1.0	0.0
Merged-chr10-85183874-4	chr10	85183378	85184378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007771, intron 1 of 12)	intron (NM_007771, intron 1 of 12)	1176.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-13869-1	chr4	13369	14369	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-3158214.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70525271-4	chr11	70524776	70525776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008946)	promoter-TSS (NM_008946)	-81.0	NM_008946	19175.0	Mm.98	NM_008946	ENSMUSG00000018286	Psmb6	Lmp19|Mpnd	proteasome (prosome, macropain) subunit, beta type 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95488891-4	chr8	95488404	95489404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009974)	promoter-TSS (NM_009974)	-84.0	NM_009974	13000.0	Mm.51136	NM_009974	ENSMUSG00000046707	Csnk2a2	1110035J23Rik|C77789|CK2	casein kinase 2, alpha prime polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-54045744-4	chr5	54045254	54046254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	47231.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-56495990-2	chr3	56495490	56496490	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-312289.0	NM_030595	26422.0	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120234791-2	chr11	120234291	120235291	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198423, intron 1 of 27)	CpG	1844.0	NM_198423	268515.0	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-14630230-4	chr13	14629740	14630740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001104646)	promoter-TSS (NM_001104646)	-5.0	NM_001104646	105351.0	Mm.41450	NM_134067	ENSMUSG00000039182	AW209491	-	expressed sequence AW209491	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103399280-2	chr11	103398780	103399780	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 2 of 11)	B3|SINE|B2	13384.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34270441-4	chr19	34269963	34270963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15090.0	NM_007392	11475.0	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMAalpha|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	26.5	63.0	31.5	8.5	15.5	28.5
Merged-chr9-90021626-4	chr9	90021120	90022120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357743, intron 26 of 26)	intron (NM_001357743, intron 26 of 26)	-32647.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	0.0	0.0	5.5	2.5	4.5	1.0
Merged-chr10-73386322-2	chr10	73385822	73386822	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-299617.0	NR_040646	327768.0	Mm.417745	NR_040646	ENSMUSG00000111994	A330049N07Rik	-	RIKEN cDNA A330049N07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43561106-2	chr4	43560606	43561606	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011602, intron 1 of 56)	intron (NM_011602, intron 1 of 56)	1477.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160171285-4	chr2	160170763	160171763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	154610.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42596296-2	chr19	42595796	42596796	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164311, intron 14 of 14)	PB1D10|SINE|Alu	16510.0	NM_001164311	67573.0	Mm.178767	NM_053083	ENSMUSG00000025185	Loxl4	4833426I20Rik|Loxc	lysyl oxidase-like 4	protein-coding	8.5	0.0	1.5	0.0	4.0	0.5
Merged-chr4-141016603-4	chr4	141016102	141017102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008546)	TTS (NM_008546)	5965.0	NM_008546	17150.0	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61394980-4	chr18	61394496	61395496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133249, intron 1 of 11)	intron (NM_133249, intron 1 of 11)	2904.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125569573-1	chr8	125569073	125570073	+	1000.0	f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	CpG	290.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	65.0	293.5	165.5	84.0	190.0	90.5
Merged-chr11-63060117-4	chr11	63059613	63060613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1546.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-46760464-4	chr14	46759963	46760963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028222)	promoter-TSS (NM_028222)	-78.0	NM_001360041	72391.0	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding	22.0	21.5	32.0	13.0	5.0	20.0
Merged-chr3-31100951-2	chr3	31100451	31101451	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039090, intron 2 of 6)	intron (NM_001039090, intron 2 of 6)	5893.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180116217-2	chr2	180115717	180116717	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3149.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	0.0	0.0	0.0	2.0	4.0	0.5
Merged-chr11-102284829-4	chr11	102284310	102285310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302506)	promoter-TSS (NM_001302506)	-10.0	NM_001302506	72053.0	Mm.101274	NM_028076	ENSMUSG00000034757	Tmub2	2010008E23Rik	transmembrane and ubiquitin-like domain containing 2	protein-coding	1.0	1.0	0.0	10.5	9.5	3.0
Merged-chr7-121983251-4	chr7	121982755	121983755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-1562.0	NM_001033318	233824.0	Mm.442015	NM_001033318	ENSMUSG00000034951	Cog7	5630400E24Rik|Gm167	component of oligomeric golgi complex 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-56465496-4	chr9	56464986	56465986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025812, intron 1 of 9)	intron (NM_025812, intron 1 of 9)	46867.0	NM_025812	66867.0	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120727313-4	chr11	120726775	120727775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347608)	promoter-TSS (NM_001347608)	6.0	NM_026428	67880.0	Mm.231091	NM_026428	ENSMUSG00000039450	Dcxr	0610038K04Rik|1810027P18Rik|XR	dicarbonyl L-xylulose reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55570054-4	chr19	55569533	55570533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	132171.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103267578-4	chr11	103267090	103268090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016896)	promoter-TSS (NM_016896)	-189.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	4.0	37.5	28.5	12.5	7.5	19.5
Merged-chr1-186117361-4	chr1	186116859	186117859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146106)	promoter-TSS (NM_146106)	-49.0	NM_146106	226791.0	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87987575-4	chr11	87987054	87988054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168472)	promoter-TSS (NM_001168472)	-21.0	NM_026556	68097.0	Mm.246436	NM_026556	ENSMUSG00000020483	Dynll2	1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2	dynein light chain LC8-type 2	protein-coding	45.5	99.0	91.0	51.5	92.5	75.5
Merged-chr1-38987686-4	chr1	38987215	38988215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026850)	promoter-TSS (NM_026850)	-99.0	NM_026850	68833.0	Mm.28121	NM_026850	ENSMUSG00000026078	Pdcl3	1110061A19Rik|C80025|Viaf1	phosducin-like 3	protein-coding	24.5	71.0	20.0	13.0	31.5	42.0
Merged-chr14-20655041-5	chr14	20654554	20655554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021508, intron 2 of 5)	intron (NM_021508, intron 2 of 5)	1486.0	NM_021508	59011.0	Mm.439911	NM_021508	ENSMUSG00000068697	Myoz1	2310001N11Rik|AV090278|FATZ|Myoz	myozenin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156523209-4	chr2	156522707	156523707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291122, intron 14 of 20)	intron (NM_001291122, intron 14 of 20)	-24369.0	NM_026661	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	15.0	16.0	7.0	5.0	9.5	4.5
Merged-chr16-23982625-4	chr16	23982107	23983107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009744, intron 1 of 9)	intron (NM_009744, intron 1 of 9)	-1324.0	NM_001348026	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146499780-4	chr3	146499278	146500278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027617)	promoter-TSS (NM_027617)	-25.0	NM_027617	70951.0	Mm.383235	NM_027617	ENSMUSG00000028188	Spata1	4921536I21Rik|AV266943|SP-2	spermatogenesis associated 1	protein-coding	53.0	141.0	84.5	30.0	99.0	70.5
Merged-chr7-49251193-4	chr7	49250683	49251683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 1 of 37)	(T)n|Simple_repeat|Simple_repeat	4994.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-100643442-4	chr9	100642938	100643938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357264)	promoter-TSS (NM_001357264)	-10.0	NM_009282	20842.0	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	27.5	63.5	55.5	22.5	38.5	36.5
Merged-chr19-12466292-4	chr19	12465792	12466792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172442)	TTS (NM_172442)	5513.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	58.5	131.0	140.0	49.5	219.0	139.5
Merged-chr17-86162094-4	chr17	86161591	86162591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5694.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr13-74640079-6	chr13	74639575	74640575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030711, intron 1 of 18)	CpG	222.0	NM_030711	80898.0	Mm.83526	NM_030711	ENSMUSG00000021583	Erap1	A-LAP|ARTS-1|Arts1|ERAAP|PILSA|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50452601-4	chr9	50452086	50453086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41939.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-60795028-2	chr9	60794528	60795528	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357408, intron 1 of 19)	intron (NM_001357408, intron 1 of 19)	586.0	NM_001357407	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113740737-4	chr6	113740271	113741271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024206)	promoter-TSS (NM_024206)	-90.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21424514-4	chr11	21423999	21424999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53232.0	NM_001290634	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	21.5	74.5	19.5	23.5	51.0	35.0
Merged-chr6-72933163-4	chr6	72932664	72933664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25068.0	NM_001039392	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	1.5	12.0	5.5	9.5	7.5	3.0
Merged-chr4-141795765-1	chr4	141795265	141796265	+	1000.0	f1_balb.idr	intron (NM_001355176, intron 1 of 8)	ID_B1|SINE|B4	2153.0	NM_001277932	12371.0	Mm.88829	NM_015733	ENSMUSG00000028914	Casp9	AI115399|APAF-3|AW493809|CASP-9|Caspase-9|ICE-LAP6|Mch6	caspase 9	protein-coding	0.5	0.0	3.0	2.5	6.5	2.5
Merged-chr5-74957457-4	chr5	74956957	74957957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045866, intron 2 of 4)	intron (NR_045866, intron 2 of 4)	8263.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99568962-4	chr9	99568453	99569453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166138)	promoter-TSS (NM_001166138)	-54.0	NM_028768	74125.0	Mm.234823	NM_028768	ENSMUSG00000032468	Armc8	1200015K23Rik|Gid5|HSPC056	armadillo repeat containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-65115046-4	chr6	65114551	65115551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001355250, exon 24 of 24)	3' UTR (NM_001355250, exon 24 of 24)	29679.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-47070201-4	chr7	47069713	47070713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	13011.0	NR_106023	102465639.0		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70845233-2	chr11	70844733	70845733	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291141, intron 1 of 16)	G-rich|Low_complexity|Low_complexity	472.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	0.0	11.5	9.0	2.0	9.0	6.0
Merged-chr4-126438061-4	chr4	126437583	126438583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001317173, exon 19 of 19)	3' UTR (NM_001317173, exon 19 of 19)	-8541.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88714370-4	chr4	88713855	88714855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	8153.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	1.0	4.5	0.5	1.5	1.5	2.0
Merged-chr17-67347328-7	chr17	67346834	67347834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	7125.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-140102331-4	chr7	140101816	140102816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001286217, exon 1 of 6)	exon (NM_001286217, exon 1 of 6)	125.0	NM_001286217	69064.0	Mm.41915	NM_026928	ENSMUSG00000025466	Fuom	Fucu|Le51	fucose mutarotase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95724379-4	chr16	95723873	95724873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A1|LTR|ERVK	21966.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-75410134-4	chr9	75409635	75410635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027418)	promoter-TSS (NM_027418)	-49.0	NR_040719	71274.0	Mm.399152	NR_040719	ENSMUSG00000097021	4933433G15Rik	4921522K19Rik	RIKEN cDNA 4933433G15 gene	ncRNA	64.0	230.0	169.5	74.0	180.0	108.0
Merged-chr18-37883664-4	chr18	37883162	37884162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007858, intron 16 of 26)	intron (NM_007858, intron 16 of 26)	-29002.0	NR_105945	102465592.0		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136198359-2	chr5	136197859	136198859	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025774, intron 1 of 5)	B1F1|SINE|Alu	595.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59755391-4	chr9	59754872	59755872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173018, intron 1 of 43)	intron (NM_173018, intron 1 of 43)	4198.0	NM_173018	270163.0	Mm.249545	NM_173018	ENSMUSG00000039585	Myo9a	4732465J09Rik|C130068I12Rik|C230003M11	myosin IXa	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61762116-4	chr11	61761575	61762575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164242)	promoter-TSS (NM_001164242)	13.0	NM_144806	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120253958-4	chr1	120253472	120254472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085409, intron 2 of 5)	intron (NM_001085409, intron 2 of 5)	11308.0	NM_133186	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37141167-4	chr10	37140686	37141686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2260.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-113440874-4	chr2	113440367	113441367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285459)	promoter-TSS (NM_001285459)	-197.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-70472055-2	chr18	70471548	70472548	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289649)	promoter-TSS (NM_001289649)	-406.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	13.5	42.5	24.0	1.5	17.5	29.0
Merged-chr9-61681213-4	chr9	61680712	61681712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	233298.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-18781432-4	chr13	18780936	18781936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 4 of 28)	intron (NM_172120, intron 4 of 28)	64144.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	19.0	49.0	13.0	29.5	31.5	15.0
Merged-chr7-4445664-4	chr7	4445174	4446174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290409)	promoter-TSS (NM_001290409)	-17.0	NM_001290411	108841.0	Mm.413106	NM_175372	ENSMUSG00000008435	Rdh13	8430425D21Rik	retinol dehydrogenase 13 (all-trans and 9-cis)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165644558-4	chr1	165644059	165645059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10018.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172478185-4	chr1	172477689	172478689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029612, exon 4 of 4)	exon (NM_029612, exon 4 of 4)	2829.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	3.0	10.5	15.0	6.5	5.0	17.5
Merged-chr7-142340262-4	chr7	142339767	142340767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177265, intron 3 of 3)	intron (NM_177265, intron 3 of 3)	31992.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	142.5	356.0	201.5	23.5	92.0	79.5
Merged-chr8-35387130-4	chr8	35386630	35387630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177741, exon 2 of 2)	3' UTR (NM_177741, exon 2 of 2)	11389.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	30.0	18.0	48.0	24.0	23.0	18.0
Merged-chr6-127266216-4	chr6	127265722	127266722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41745.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88149198-4	chr3	88148705	88149705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	6833.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120478266-4	chr14	120477769	120478769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029519)	promoter-TSS (NM_029519)	-192.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105415684-4	chr5	105415201	105416201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033550)	promoter-TSS (NM_001033550)	-74.0	NM_001033550	433926.0	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	2210408K08Rik|R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139388900-4	chr7	139388428	139389428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127363)	promoter-TSS (NM_001127363)	-181.0	NM_183144	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54947438-2	chr6	54946938	54947938	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171007, intron 3 of 11)	ID4_|SINE|ID	24223.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73090371-4	chr15	73089888	73090888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053068)	promoter-TSS (NM_053068)	-24.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67598779-4	chr10	67598257	67599257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26798.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31082812-2	chr6	31082312	31083312	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19719.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63731605-4	chr9	63731095	63732095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	26399.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32249127-4	chr4	32248639	32249639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-168296.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	37.0	117.5	57.0	46.0	76.0	55.5
Merged-chr10-117710763-4	chr10	117710261	117711261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001288586)	promoter-TSS (NM_001288586)	-3.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-69213124-4	chr10	69212627	69213627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331193)	promoter-TSS (NM_001331193)	-29.0	NM_001331193	320700.0	Mm.396529	NM_001331193	ENSMUSG00000090622	A930033H14Rik	-	RIKEN cDNA A930033H14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-96980253-4	chr5	96979747	96980747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17442.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-70986967-4	chr2	70986465	70987465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 3 of 9)	(CA)n|Simple_repeat|Simple_repeat	31409.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95708350-4	chr16	95707845	95708845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011809, intron 2 of 9)	intron (NM_011809, intron 2 of 9)	5938.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-72968572-4	chr9	72968003	72969003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163725, intron 4 of 6)	intron (NM_001163725, intron 4 of 6)	9718.0	NM_001163725	67685.0	Mm.31817	NM_026314	ENSMUSG00000092192	Dyx1c1	1700010I24Rik|Dnaaf4|EKN1|b2b811.1Clo|b2b811Clo	dyslexia susceptibility 1 candidate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37872702-2	chr1	37872202	37873202	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037918, intron 1 of 1)	intron (NM_001037918, intron 1 of 1)	496.0	NM_001037918	623661.0	Mm.138000	NM_001037918	ENSMUSG00000037216	Lipt1	EG623661	lipoyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-3114645-1	chr17	3114145	3115145	+	1000.0	f0_c57.idr	promoter-TSS (NM_134123)	promoter-TSS (NM_134123)	-327.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25015951-4	chr17	25015449	25016449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020608)	promoter-TSS (NM_020608)	-137.0	NM_134126	106633.0	Mm.32802	NM_134126	ENSMUSG00000024169	Ift140	AI661311|Tce5|Wdtc2|mKIAA0590	intraflagellar transport 140	protein-coding	83.0	230.5	91.5	70.5	168.5	84.5
Merged-chr14-103477404-4	chr14	103476907	103477907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-35934.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54954828-3	chr6	54954337	54955337	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172729, intron 1 of 11)	intron (NM_172729, intron 1 of 11)	16824.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21694215-4	chr16	21693717	21694717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001001881, exon 1 of 2)	exon (NM_001001881, exon 1 of 2)	448.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10431101-2	chr17	10430601	10431601	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 4 of 4)	intron (NM_027032, intron 4 of 4)	-25115.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73433773-4	chr13	73433276	73434276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33607.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-145929756-4	chr3	145929279	145930279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009740, intron 1 of 2)	intron (NM_009740, intron 1 of 2)	5517.0	NM_009740	12042.0	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-149267692-4	chr5	149267216	149268216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009663, intron 1 of 4)	intron (NM_009663, intron 1 of 4)	2712.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58745026-6	chr1	58744540	58745540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 7 of 8)	intron (NM_001355056, intron 7 of 8)	14488.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	3.0	13.5	5.0	2.5	11.0	7.0
Merged-chr13-54694133-4	chr13	54693640	54694640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027395)	promoter-TSS (NR_027395)	-180.0	NR_027396	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0.0	3.5	11.5	5.5	8.0	10.0
Merged-chr17-83861865-4	chr17	83861359	83862359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7441.0	NR_155491	320021.0	Mm.379475	NR_155490		C430042M11Rik	-	RIKEN cDNA C430042M11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20804705-4	chr16	20804189	20805189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70178.0	NM_009379	21832.0	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-186677821-4	chr1	186677321	186678321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009367, intron 1 of 6)	B4A|SINE|B4	28168.0	NM_009367	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-71365212-3	chr10	71364711	71365711	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027184, intron 2 of 5)	intron (NM_027184, intron 2 of 5)	17448.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45339462-4	chr7	45338995	45339995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010473)	TTS (NM_010473)	4226.0	NM_010473	15464.0	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-37431279-4	chr2	37430779	37431779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146253)	promoter-TSS (NM_146253)	-360.0	NM_146253	241322.0	Mm.330182	NM_146253	ENSMUSG00000066798	Zbtb6	A830092L04Rik|ZID|Zfp482	zinc finger and BTB domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37660270-4	chr13	37659763	37660763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-165775.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	42.5	61.5	42.5	26.5	33.0	36.5
Merged-chr4-116994465-4	chr4	116993963	116994963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009478)	promoter-TSS (NM_009478)	-50.0	NM_009478	22275.0	Mm.46484	NM_009478	ENSMUSG00000028684	Urod	AI323803|UPD|Uro-d	uroporphyrinogen decarboxylase	protein-coding	1.0	0.0	1.0	0.0	0.0	0.0
Merged-chr2-26360984-4	chr2	26360506	26361506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1459.0	NM_001037747	332579.0	Mm.330064	NM_001037747	ENSMUSG00000026928	Card9	Gm782	caspase recruitment domain family, member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57344599-4	chr17	57344117	57345117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14069.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-63708658-4	chr18	63708164	63709164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360837)	promoter-TSS (NM_001360837)	-31.0	NM_001360837	104082.0	Mm.30850	NM_001014981	ENSMUSG00000040560	Wdr7	AI462727|TRAG|mKIAA0541	WD repeat domain 7	protein-coding	20.0	27.0	32.5	20.5	26.0	32.5
Merged-chr1-189875839-3	chr1	189875338	189876338	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008976, exon 19 of 19)	3' UTR (NM_008976, exon 19 of 19)	46453.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	5.5	2.0	2.0	4.0	7.0	10.5
Merged-chr16-58670351-4	chr16	58669831	58670831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007757, exon 1 of 7)	5' UTR (NM_007757, exon 1 of 7)	123.0	NM_007757	12892.0	Mm.291519	NM_007757	ENSMUSG00000022742	Cpox	CPX|Cpo|HCP|cac|nct	coproporphyrinogen oxidase	protein-coding	9.5	9.0	18.0	0.0	9.5	17.0
Merged-chr13-51645127-4	chr13	51644603	51645603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025415)	promoter-TSS (NM_025415)	-129.0	NM_025415	66197.0	Mm.222228	NM_025415	ENSMUSG00000062248	Cks2	1110038L14Rik|CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64738121-3	chr9	64737613	64738613	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017382)	promoter-TSS (NM_017382)	-357.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43913423-4	chr1	43912922	43913922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-20572.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33531347-4	chr16	33530850	33531850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 1 of 11)	intron (NM_001083902, intron 1 of 11)	12755.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21616065-4	chr9	21615563	21616563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011417)	promoter-TSS (NM_011417)	-106.0	NM_011417	20586.0	Mm.286593	NM_011417	ENSMUSG00000032187	Smarca4	BAF190A|Brg1|HP1-BP72|SNF2beta|SW1/SNF|b2b508.1Clo|b2b692Clo	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21517733-4	chr5	21517233	21518233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199632, intron 17 of 20)	ORR1C1|LTR|ERVL-MaLR	-25794.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62470914-4	chr4	62470418	62471418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290521)	promoter-TSS (NM_001290521)	-19.0	NM_001290521	71354.0	Mm.155573	NM_023597	ENSMUSG00000028391	Wdr31	5430402I10Rik|spWD	WD repeat domain 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84184512-2	chr15	84184012	84185012	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054088, intron 7 of 7)	intron (NM_054088, intron 7 of 7)	-7721.0	NM_178614	68653.0	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4198905-4	chr12	4198387	4199387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 8 of 21)	intron (NM_001159537, intron 8 of 21)	35078.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-67961415-2	chr8	67960915	67961915	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177698, intron 2 of 14)	intron (NM_177698, intron 2 of 14)	13159.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-7395713-4	chr1	7395199	7396199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	306779.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34078050-4	chr13	34077558	34078558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009450)	promoter-TSS (NM_009450)	-50.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	21.5	112.0	87.0	18.0	87.0	64.5
Merged-chr4-155993133-4	chr4	155992619	155993619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302469)	promoter-TSS (NM_001302469)	-34.0	NM_001302469	20318.0	Mm.293517	NM_011341	ENSMUSG00000029076	Sdf4	Cab45	stromal cell derived factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119432432-4	chr8	119431944	119432944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4718.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-115131470-4	chr7	115130958	115131958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	180184.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	2.0	3.0	3.5	0.0	0.0	1.5
Merged-chr10-81426144-2	chr10	81425644	81426644	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 1 of 8)	intron (NM_026756, intron 1 of 8)	1029.0	NM_008688	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-6214711-4	chr1	6214225	6215225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009826)	promoter-TSS (NM_009826)	63.0	NM_009826	12421.0	Mm.293811	NM_009826	ENSMUSG00000025907	Rb1cc1	2900055E04Rik|5930404L04Rik|Cc1|FIP200|LaXp180	RB1-inducible coiled-coil 1	protein-coding	49.0	69.0	79.0	59.0	95.5	146.0
Merged-chr11-48853027-2	chr11	48852527	48853527	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15556.0	NM_001347446	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-66827614-4	chr4	66827116	66828116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021297)	promoter-TSS (NM_021297)	65.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	18.0	81.5	43.0	24.0	65.0	34.0
Merged-chr7-126792544-4	chr7	126792055	126793055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360464)	promoter-TSS (NM_001360464)	-8.0	NM_019674	56420.0	Mm.41998	NM_019674	ENSMUSG00000030697	Ppp4c	1110002D08Rik|AU016079|PP-X|PP4C|Ppx|pp4	protein phosphatase 4, catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62550490-4	chr11	62550027	62551027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002875)	promoter-TSS (NR_002875)	-644.0	NM_011664	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86763450-2	chr11	86762950	86763950	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR10C|LTR|ERVK	-5883.0	NM_001356393	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44818805-4	chr10	44818296	44819296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-248418.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-95313642-4	chr1	95313150	95314150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026321)	promoter-TSS (NM_026321)	22.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34197674-4	chr17	34197180	34198180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010724)	promoter-TSS (NM_010724)	-515.0	NM_010724	16913.0	Mm.180191	NM_010724	ENSMUSG00000024338	Psmb8	Lmp-7|Lmp7	proteasome (prosome, macropain) subunit, beta type 8 (large multifunctional peptidase 7)	protein-coding	2.0	22.5	4.5	16.5	15.5	1.0
Merged-chr15-31224301-4	chr15	31223814	31224814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146057)	promoter-TSS (NM_146057)	-71.0	NM_146057	223453.0	Mm.222867	NM_146057	ENSMUSG00000039168	Dap	4921531N22Rik|AI789753|AU040360	death-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-18007253-4	chr5	18006746	18007746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 5 of 7)	intron (NM_001081143, intron 5 of 7)	44676.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-107096551-4	chr8	107096065	107097065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286200)	promoter-TSS (NM_001286200)	-20.0	NR_104410	21750.0	Mm.6402	NM_009353	ENSMUSG00000031921	Terf2	TRF2	telomeric repeat binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6061204-4	chr19	6060749	6061749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013859)	promoter-TSS (NM_013859)	42.0	NM_013859	29805.0	Mm.2310	NM_013859	ENSMUSG00000075227	Znhit2	C11orf5|Fon|ORF6|Znhit2-ps	zinc finger, HIT domain containing 2	protein-coding	31.5	58.0	46.5	27.0	45.5	54.0
Merged-chr10-17221651-4	chr10	17221153	17222153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-125871.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-33248650-4	chr4	33248113	33249113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033225, exon 1 of 2)	5' UTR (NM_001033225, exon 1 of 2)	174.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11197198-4	chr2	11196687	11197687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	24805.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91459455-4	chr1	91458948	91459948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011066)	promoter-TSS (NM_011066)	-120.0	NM_011066	18627.0	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	5.5	28.0	26.0	6.5	32.5	14.0
Merged-chr13-111930117-4	chr13	111929621	111930621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62185.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114921878-4	chr6	114921379	114922379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177683)	promoter-TSS (NM_177683)	-58.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120991315-4	chr11	120990802	120991802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139059)	promoter-TSS (NM_139059)	31.0	NM_139059	104318.0	Mm.216227	NM_027874	ENSMUSG00000025162	Csnk1d	1200006A05Rik|AA409348|D930010H05Rik	casein kinase 1, delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34293022-4	chr6	34292530	34293530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24413.0	NR_037965	626009.0	Mm.451	NR_028277		Gm6644	Akr1b3p|EG626009	Akr1b3 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83619957-2	chr7	83619457	83620457	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177695, exon 22 of 23)	exon (NM_177695, exon 22 of 23)	-12060.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153425149-4	chr1	153424665	153425665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033162)	promoter-TSS (NM_001033162)	-44.0	NM_001033162	71836.0	Mm.49460	NM_001033162	ENSMUSG00000042708	Shcbp1l	1700012A16Rik	Shc SH2-domain binding protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103099091-6	chr14	103098658	103099658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347601)	promoter-TSS (NM_001347601)	-154.0	NM_001347601	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88243250-4	chr7	88242748	88243748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34837.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129782044-4	chr4	129781554	129782554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38425.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	106.0	317.5	178.5	66.0	157.5	129.5
Merged-chr11-85830225-2	chr11	85829725	85830725	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_077059, intron 1 of 4)	intron (NR_077059, intron 1 of 4)	2163.0	NR_077059	69909.0	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49213777-4	chr13	49213214	49214214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026738, intron 1 of 5)	intron (NM_026738, intron 1 of 5)	2312.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86371483-4	chr6	86370980	86371980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026506)	promoter-TSS (NM_026506)	-60.0	NM_026506	68011.0	Mm.276802	NM_026506	ENSMUSG00000057278	Snrpg	2810024K17Rik|AL022803|SMG|sm-G|snRNP-G	small nuclear ribonucleoprotein polypeptide G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30369618-2	chr5	30369118	30370118	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001100395, intron 46 of 46)	intron (NM_001100395, intron 46 of 46)	27955.0	NM_001033460	381738.0	Mm.389604	NM_001033460	ENSMUSG00000073102	Drc1	Ccdc164|Gm1060|b2b1654Clo	dynein regulatory complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138972260-4	chr4	138971766	138972766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305423)	promoter-TSS (NM_001305423)	-17.0	NM_001305423	77056.0	Mm.122336	NM_029857	ENSMUSG00000041143	Tmco4	4632413C14Rik|AI430825	transmembrane and coiled-coil domains 4	protein-coding	61.5	106.0	92.5	70.5	107.5	81.0
Merged-chr5-124551543-2	chr5	124551043	124552043	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1321.0	NM_001190795	67848.0	Mm.281601	NM_026409	ENSMUSG00000029389	Ddx55	2810021H22Rik|mKIAA1595	DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91030026-2	chr1	91029526	91030526	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	ORR1B2|LTR|ERVL-MaLR	-23418.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-54277377-4	chr3	54276881	54277881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253682, intron 4 of 11)	intron (NM_001253682, intron 4 of 11)	-83726.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-39944656-4	chr15	39944160	39945160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172814)	promoter-TSS (NM_172814)	-666.0	NM_172814	239393.0	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-104334630-2	chr11	104334130	104335130	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081045, exon 14 of 14)	3' UTR (NM_001081045, exon 14 of 14)	103194.0	NM_001285454	17762.0	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20990799-4	chr10	20990326	20991326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358561, intron 15 of 22)	intron (NM_001358561, intron 15 of 22)	38279.0	NM_001358561	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	8.5	24.5	3.5	7.0	14.5	11.0
Merged-chr2-23041596-4	chr2	23041118	23042118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-1377.0	NM_145994	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-47105193-4	chr13	47104676	47105676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025900, intron 2 of 10)	intron (NM_025900, intron 2 of 10)	1045.0	NM_025900	110052.0	Mm.131150	NM_025900	ENSMUSG00000021377	Dek	1810019E15Rik|D13H6S231E	DEK oncogene (DNA binding)	protein-coding	93.5	278.0	188.0	95.5	328.0	165.5
Merged-chr4-155492100-2	chr4	155491600	155492600	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160017, intron 1 of 10)	CpG	739.0	NM_001160016	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	19.0	39.5	34.0	12.5	25.0	20.0
Merged-chr1-179518019-4	chr1	179517522	179518522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027188)	promoter-TSS (NM_027188)	19.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62630165-4	chr4	62629642	62630642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019492, intron 14 of 19)	intron (NM_019492, intron 14 of 19)	10470.0	NM_134257	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.0	6.0	7.0	2.5	3.0	11.0
Merged-chr17-65730493-4	chr17	65729991	65730991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	42261.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109331546-4	chr11	109331042	109332042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15325.0	NR_027883	67927.0	Mm.394490	NR_027883	ENSMUSG00000099630	1700096J18Rik	-	RIKEN cDNA 1700096J18 gene	ncRNA	4.5	23.5	34.0	5.0	23.0	9.0
Merged-chr5-67600126-4	chr5	67599626	67600626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7757.0	NM_001033415	330096.0	Mm.442747	NM_001033415	ENSMUSG00000050010	Shisa3	D830007B15Rik	shisa family member 3	protein-coding	0.0	3.5	0.0	0.0	3.0	4.0
Merged-chr4-62681634-4	chr4	62681143	62682143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310706, intron 1 of 6)	intron (NM_001310706, intron 1 of 6)	7669.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	2.0	2.0	2.5	2.0	1.5	2.5
Merged-chr6-4977647-4	chr6	4977141	4978141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	MTE2a|LTR|ERVL-MaLR	74321.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	4.5	10.5	19.0	4.5	10.5	19.0
Merged-chr10-17522341-4	chr10	17521826	17522826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-200902.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35043825-1	chr9	35043325	35044325	+	1000.0	f1_balb.idr	Intergenic	MIRc|SINE|MIR	-72903.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	7.0	7.0	3.5	7.5	0.0	4.0
Merged-chr5-137503007-2	chr5	137502505	137503505	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_028753)	promoter-TSS (NM_028753)	-576.0	NM_028753	74097.0	Mm.290242	NM_028753	ENSMUSG00000029715	Pop7	0610037N12Rik|AI852017|Rpp20	processing of precursor 7, ribonuclease P family, (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37541187-4	chr1	37540735	37541735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173870)	promoter-TSS (NM_173870)	-219.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5986027-4	chr18	5985522	5986522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150076.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	14.5	1.0	20.0	5.5	24.5	20.0
Merged-chr6-125603390-4	chr6	125602895	125603895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011708, exon 14 of 52)	exon (NM_011708, exon 14 of 52)	50447.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-79331444-2	chr14	79330944	79331944	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29809.0	NM_025427	66214.0	Mm.29811	NM_025427	ENSMUSG00000022018	Rgcc	1190002H23Rik|Rgc-32|Rgc32	regulator of cell cycle	protein-coding	2.5	0.0	0.0	2.0	0.0	0.5
Merged-chr4-48419269-4	chr4	48418815	48419815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281978, intron 15 of 18)	intron (NM_001281978, intron 15 of 18)	54148.0	NM_172304	269536.0	Mm.272025	NM_172304	ENSMUSG00000028345	Tex10	2610206N19Rik|2810462N03Rik|BC006867	testis expressed gene 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4836991-4	chr18	4836484	4837484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045881, intron 5 of 9)	intron (NR_045881, intron 5 of 9)	24498.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98985867-4	chr15	98985374	98986374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045991)	promoter-TSS (NR_045991)	-91.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79824036-2	chr10	79823536	79824536	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030218, intron 1 of 4)	intron (NM_030218, intron 1 of 4)	3015.0	NM_030218	78906.0	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32690815-2	chr5	32690315	32691315	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55527.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	3.5	1.5	2.0	8.0	4.5	3.5
Merged-chr12-12262232-4	chr12	12261764	12262764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	CpG	125.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	3.0	17.0	6.5	2.5	5.0	5.0
Merged-chr17-25116056-4	chr17	25115526	25116526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163661)	promoter-TSS (NM_001163661)	-59.0	NM_001163661	71718.0	Mm.288702	NM_027880	ENSMUSG00000024170	Telo2	1200003M09Rik|AI415602|Tel2|mKIAA0683	telomere maintenance 2	protein-coding	74.0	151.5	182.5	90.0	141.5	132.5
Merged-chr18-89160033-4	chr18	89159527	89160527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37400.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-138527168-4	chr3	138526679	138527679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313980)	promoter-TSS (NM_001313980)	-89.0	NM_001313980	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	91.0	231.0	166.0	98.0	188.0	147.0
Merged-chr13-90923502-1	chr13	90923002	90924002	+	1000.0	f1_c57bl6.idr	intron (NM_024175, intron 1 of 3)	CpG	380.0	NM_024175	66475.0	Mm.306302	NM_024175	ENSMUSG00000049517	Rps23	2410044J15Rik	ribosomal protein S23	protein-coding	212.0	406.0	333.0	151.5	406.0	288.0
Merged-chr7-44815955-4	chr7	44815500	44816500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030693)	promoter-TSS (NM_030693)	-88.0	NM_053074	18226.0	Mm.2565	NM_053074	ENSMUSG00000109511	Nup62	D7Ertd649e|Nupc1|p62	nucleoporin 62	protein-coding	14.5	28.0	7.0	7.5	28.5	9.0
Merged-chr13-59875861-4	chr13	59875357	59876357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52710.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	41.0	110.0	74.0	16.5	78.5	50.0
Merged-chr8-105566083-4	chr8	105565601	105566601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013477)	promoter-TSS (NM_013477)	-37.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181483692-4	chr2	181483125	181484125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9581.0	NM_183181	241850.0	Mm.87455	NM_183181	ENSMUSG00000055882	Abhd16b	1700095H12	abhydrolase domain containing 16B	protein-coding	11.5	29.5	49.0	44.5	67.5	43.5
Merged-chr2-38926732-4	chr2	38926218	38927218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010264)	promoter-TSS (NM_010264)	-257.0	NM_010264	14536.0	Mm.439703	NM_010264	ENSMUSG00000063972	Nr6a1	1700113M01Rik|Gcnf|NCNF|RTR	nuclear receptor subfamily 6, group A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23581551-4	chr13	23581068	23582068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175654)	promoter-TSS (NM_175654)	-34.0	NM_175654	319156.0	Mm.260530	NM_175654	ENSMUSG00000061482	Hist1h4d	-	histone cluster 1, H4d	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-71003872-4	chr12	71003326	71004326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045055, intron 3 of 3)	B2_Mm1t|SINE|B2	11997.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	31.0	18.0	26.5	30.0	31.5	26.5
Merged-chr9-106429447-4	chr9	106428952	106429952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324534)	promoter-TSS (NM_001324534)	41.0	NM_009082	19944.0	Mm.288696	NM_009082	ENSMUSG00000048758	Rpl29	Rpl43	ribosomal protein L29	protein-coding	226.0	393.0	343.0	150.0	351.0	251.0
Merged-chr15-80054252-4	chr15	80053751	80054751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24328.0	NR_028282	100302601.0		NR_028282	ENSMUSG00000077734	Snord83b	MBII-10	small nucleolar RNA, C/D box 83B	snoRNA	0.0	10.0	4.5	3.5	19.0	7.0
Merged-chr6-42392105-4	chr6	42391597	42392597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-8141.0	NM_001001452	387514.0	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59435037-4	chr2	59434527	59435527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48345.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34121185-5	chr17	34120762	34121762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204973, intron 1 of 12)	CpG-6274	485.0	NM_010238	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	96.0	236.5	165.5	95.0	197.0	193.0
Merged-chr5-105624402-4	chr5	105623907	105624907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75562.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132215025-4	chr4	132214526	132215526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2770.0	NM_145393	213541.0	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH domain family 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148152036-4	chr4	148151577	148152577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015797)	promoter-TSS (NM_015797)	-48.0	NM_001163706	50762.0	Mm.27445	NM_015797	ENSMUSG00000055401	Fbxo6	AA408845|FBG2|Fbs2|Fbx6b|Fbxo6b	F-box protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16228775-4	chr1	16228256	16229256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025303)	TTS (NM_025303)	122874.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112619965-4	chr12	112619481	112620481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007421)	promoter-TSS (NM_007421)	-66.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99380975-4	chr7	99380482	99381482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362166)	promoter-TSS (NM_001362166)	-536.0	NM_001362168	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	5.5	42.5	27.0	36.5	60.5	50.0
Merged-chr2-92183848-4	chr2	92183376	92184376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346704)	promoter-TSS (NM_001346704)	-306.0	NM_138755	192285.0	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1	PHD finger protein 21A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106317131-4	chr1	106316621	106317621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 3 of 16)	intron (NM_133821, intron 3 of 16)	145252.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	13.0	4.5	9.0	11.0	20.0	13.5
Merged-chr1-23983284-4	chr1	23982788	23983788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	22352.0	NM_026503	68002.0	Mm.250424	NM_026503	ENSMUSG00000026154	Sdhaf4	1110058L19Rik|1700001E18Rik|C6orf57	succinate dehydrogenase complex assembly factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-114834813-4	chr13	114834311	114835311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008396, exon 30 of 30)	3' UTR (NM_008396, exon 30 of 30)	16574.0	NM_001113374	17434.0	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88264896-4	chr7	88264402	88265402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14_RN|LTR|ERV1	-13183.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74828563-4	chr11	74828084	74829084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2340.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129789738-4	chr4	129789249	129790249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30730.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	111.0	312.0	177.5	58.0	210.5	122.0
Merged-chr7-99151564-4	chr7	99151034	99152034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10390.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119390478-4	chr11	119389968	119390968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035453)	promoter-TSS (NR_035453)	-4.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	92.0	258.0	200.0	218.0	309.5	241.0
Merged-chr6-95117778-4	chr6	95117293	95118293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102670)	promoter-TSS (NM_001102670)	-87.0	NM_001008785	243574.0	Mm.333275	NM_001008785	ENSMUSG00000030031	Kbtbd8	AU040152|SSEC-51|SSEC51|Takrp|mKIAA1842	kelch repeat and BTB (POZ) domain containing 8	protein-coding	2.0	4.5	1.0	0.0	2.0	0.5
Merged-chr19-37689277-2	chr19	37688777	37689777	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001105201, intron 4 of 5)	intron (NM_001105201, intron 4 of 5)	3597.0	NM_001105201	546726.0	Mm.457750	NM_001105201	ENSMUSG00000062432	Cyp26c1	EG546726	cytochrome P450, family 26, subfamily c, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110038079-4	chr9	110037594	110038594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205332, intron 8 of 17)	intron (NM_001205332, intron 8 of 17)	-13927.0	NM_001311163	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-72379163-4	chr4	72378652	72379652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	177908.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45665063-4	chr14	45664634	45665634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-6991.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	235.5	530.0	384.5	159.5	487.0	316.5
Merged-chr5-92435277-4	chr5	92434775	92435775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183392)	promoter-TSS (NM_183392)	-76.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31240846-4	chr5	31240354	31241354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347326)	promoter-TSS (NM_001347326)	-29.0	NM_001347326	192292.0	Mm.292040	NM_147201	ENSMUSG00000029148	Nrbp1	B230344L17Rik|Nrbp	nuclear receptor binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121205891-2	chr5	121205391	121206391	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011290, intron 3 of 6)	intron (NM_011290, intron 3 of 6)	1390.0	NM_011290	19988.0	Mm.262021	NM_011290	ENSMUSG00000029614	Rpl6	Taxreb107	ribosomal protein L6	protein-coding	6.5	4.5	0.5	5.5	10.0	8.0
Merged-chr19-12556487-4	chr19	12555988	12556988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17022.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	1.0	3.5	6.0	1.0	3.5	6.0
Merged-chr13-38659114-4	chr13	38658608	38659608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025380)	promoter-TSS (NM_025380)	-80.0	NM_025380	66143.0	Mm.490319	NM_025380	ENSMUSG00000001707	Eef1e1	1110003A02Rik	eukaryotic translation elongation factor 1 epsilon 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21046421-4	chr11	21045935	21046935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44889.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134098981-2	chr5	134098481	134099481	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030719)	promoter-TSS (NM_030719)	-767.0	NM_030719	80909.0	Mm.45218	NM_030719	ENSMUSG00000015944	Gatsl2	7530428J21Rik|AW742413|Castor2|Gats|Gatsl1	GATS protein-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126551140-4	chr8	126550619	126551619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42317.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129593377-4	chr2	129592892	129593892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001291021, exon 1 of 6)	5' UTR (NM_001291021, exon 1 of 6)	223.0	NM_001291022	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	303.5	637.0	521.5	337.0	671.0	554.0
Merged-chr4-86748517-4	chr4	86748010	86749010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_184088)	promoter-TSS (NM_184088)	-45.0	NM_184088	329877.0	Mm.273718	NM_184088	ENSMUSG00000038024	Dennd4c	1700065A05Rik|AA420392	DENN/MADD domain containing 4C	protein-coding	2.0	4.5	7.5	3.0	4.5	7.0
Merged-chr15-85657842-4	chr15	85657323	85658323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45950.0	NR_110483	102800312.0	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	46.5	145.5	108.0	60.5	196.0	130.0
Merged-chr1-93236384-4	chr1	93235849	93236849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172463, intron 1 of 30)	CpG	452.0	NM_172463	208777.0	Mm.271897	NM_172463	ENSMUSG00000047793	Sned1	6720455I24Rik|AI197264|AI642697|D430044C15Rik|SST3|Snep	sushi, nidogen and EGF-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12467145-2	chr19	12466645	12467645	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172442, exon 9 of 9)	3' UTR (NM_172442, exon 9 of 9)	6366.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	28.0	91.5	48.0	78.0	129.5	58.5
Merged-chr11-116283255-2	chr11	116282755	116283755	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010254, exon 2 of 2)	exon (NM_010254, exon 2 of 2)	2316.0	NM_010254	14428.0	Mm.57149	NM_010254	ENSMUSG00000020793	Galr2	mGalR	galanin receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31079796-4	chr6	31079275	31080275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16682.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-141081088-4	chr5	141080572	141081572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80476.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70785531-4	chr14	70785034	70786034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11153.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	2.5	19.0	19.0	0.5	22.0	18.0
Merged-chr11-120491839-4	chr11	120491300	120492300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013770)	promoter-TSS (NM_013770)	-37.0	NM_013770	27376.0	Mm.3991	NM_013770	ENSMUSG00000025792	Slc25a10	Dic	solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	protein-coding	32.0	96.0	84.5	31.5	95.0	85.0
Merged-chr19-46356928-4	chr19	46356417	46357417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029186)	promoter-TSS (NM_029186)	37.0	NM_029186	75146.0	Mm.159290	NM_029186	ENSMUSG00000025227	Mfsd13a	4930449A08Rik|4930538D17Rik|Tmem180	major facilitator superfamily domain containing 13a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91835934-2	chr16	91835434	91836434	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 16 of 28)	intron (NM_001110275, intron 16 of 28)	95696.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60369604-4	chr10	60369103	60370103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001159572, exon 7 of 7)	3' UTR (NM_001159572, exon 7 of 7)	22752.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-16589611-4	chr10	16589097	16590097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	506185.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-144553794-4	chr7	144553300	144554300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033319)	promoter-TSS (NM_001033319)	-71.0	NM_001195086	233977.0	Mm.490347	NM_001033319	ENSMUSG00000037519	Ppfia1	C030014K08Rik|C87158|LIP.1|LIP1	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103842539-3	chr2	103842032	103843032	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31910.0	NR_040514	78031.0	Mm.243867	NR_040514	ENSMUSG00000086687	4930547E08Rik	-	RIKEN cDNA 4930547E08 gene	ncRNA	4.0	4.5	1.5	1.5	0.5	2.0
Merged-chr11-20930821-4	chr11	20930330	20931330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99722.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	2.5	3.0	6.5	0.0	6.0	6.5
Merged-chr3-87566306-4	chr3	87565797	87566797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40719.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	36.0	43.0	50.5	11.5	7.5	3.0
Merged-chr2-167895223-4	chr2	167894688	167895688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-37139.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34360199-4	chr2	34359734	34360734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290576, intron 2 of 7)	intron (NM_001290576, intron 2 of 7)	11811.0	NM_001290576	18516.0	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-45577890-4	chr10	45577402	45578402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172473)	promoter-TSS (NM_172473)	73.0	NM_172473	209462.0	Mm.458633	NM_172473	ENSMUSG00000038822	Hace1	1700042J16Rik|A730034A22Rik|BC025474	HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55531471-5	chr4	55530979	55531979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010637, intron 2 of 4)	CpG	996.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	16.5	83.0	55.5	32.5	77.0	55.5
Merged-chr13-37337416-4	chr13	37336896	37337896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7949.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	8.5	31.0	14.5	8.5	32.0	14.0
Merged-chr10-80226534-4	chr10	80226023	80227023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023431)	promoter-TSS (NM_023431)	-75.0	NM_023431	68114.0	Mm.273418	NM_023431	ENSMUSG00000020156	Mum1	2610019J09|9430059D04Rik|UBE-1C2	melanoma associated antigen (mutated) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42000081-4	chr19	41999606	42000606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	MIR|SINE|MIR	18343.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	82.5	130.0	88.5	69.5	141.0	88.5
Merged-chr13-55105368-4	chr13	55104974	55105974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_012017, exon 1 of 7)	exon (NM_012017, exon 1 of 7)	165.0	NM_012017	26919.0	Mm.22795	NM_012017	ENSMUSG00000021481	Zfp346	Jaz|Znf346	zinc finger protein 346	protein-coding	4.5	34.0	7.0	6.0	12.5	10.5
Merged-chr9-63716354-4	chr9	63715859	63716859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	41635.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27514331-2	chr2	27513831	27514831	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080848)	promoter-TSS (NM_080848)	-816.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79076696-4	chr11	79076200	79077200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	-16864.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70029188-4	chr14	70028672	70029672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 4 of 6)	intron (NM_028560, intron 4 of 6)	-48273.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30441954-4	chr2	30441450	30442450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138748, intron 8 of 9)	intron (NM_138748, intron 8 of 9)	25900.0	NM_138748	110854.0	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104791030-4	chr3	104790539	104791539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291859, intron 1 of 4)	intron (NM_001291859, intron 1 of 4)	2005.0	NM_001291859	11853.0	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3183989-2	chr11	3183488	3184488	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 4 of 32)	intron (NM_030207, intron 4 of 32)	9475.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-43738676-4	chr2	43738175	43739175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10149.0	NM_001301832	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13832818-4	chr10	13832299	13833299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025446, intron 1 of 5)	intron (NM_025446, intron 1 of 5)	36158.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	108.0	233.0	142.5	83.0	175.0	125.5
Merged-chr3-31093391-2	chr3	31092891	31093891	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1667.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20702968-4	chr14	20702462	20703462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025366)	promoter-TSS (NM_025366)	-65.0	NM_025366	66121.0	Mm.246996	NM_025366	ENSMUSG00000063787	Chchd1	1110001O19Rik|2400010G13Rik|MRP-S37	coiled-coil-helix-coiled-coil-helix domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-70977785-4	chr2	70977292	70978292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 5 of 9)	intron (NM_145524, intron 5 of 9)	40582.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16821884-2	chr7	16821384	16822384	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039878, intron 1 of 17)	intron (NM_001039878, intron 1 of 17)	-5152.0	NM_173430	243853.0	Mm.39703	NM_173430	ENSMUSG00000048920	Fkrp	A830029B19Rik|AI842067|AI847300|LGMD1I|MDC1C	fukutin related protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-70412263-4	chr4	70411794	70412794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1859.0	NM_145990	214444.0	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149738112-4	chr4	149737621	149738621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177672)	promoter-TSS (NM_177672)	-53.0	NM_177672	230917.0	Mm.266704	NM_177672	ENSMUSG00000044700	Tmem201	AV028368|D4Ertd429e|Net5|Samp1	transmembrane protein 201	protein-coding	0.0	17.5	20.5	6.0	18.0	9.5
Merged-chr10-4107826-4	chr10	4107320	4108320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 26 of 27)	intron (NM_001170785, intron 26 of 27)	105300.0	NR_152620	102632515.0	Mm.416995	NR_152620	ENSMUSG00000111266	Gm30570	-	predicted gene, 30570	ncRNA	5.5	7.5	4.5	10.5	25.5	31.5
Merged-chr6-108836387-4	chr6	108835879	108836879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138677, intron 1 of 11)	intron (NM_138677, intron 1 of 11)	7738.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr8-11635824-4	chr8	11635316	11636316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281975)	promoter-TSS (NM_001281975)	-59.0	NM_001281974	102334.0	Mm.12459	NM_133971	ENSMUSG00000031508	Ankrd10	4833425P12Rik|AW549277	ankyrin repeat domain 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3667704-4	chr11	3667207	3668207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198162, intron 3 of 25)	intron (NM_198162, intron 3 of 25)	9007.0	NM_198162	74522.0	Mm.139127	NM_198162	ENSMUSG00000034543	Morc2a	8430403M08Rik|Zcwcc1	microrchidia 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-53463363-4	chr17	53462855	53463855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172497)	promoter-TSS (NM_172497)	-34.0	NM_172497	211482.0	Mm.60887	NM_172497	ENSMUSG00000023931	Efhb	4921525D22Rik	EF hand domain family, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45444896-4	chr13	45444391	45445391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55149.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	4.0	9.5	13.5	7.0	7.5	13.0
Merged-chr9-106822673-7	chr9	106822099	106823099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015507, intron 1 of 22)	CpG	623.0	NM_001015507	321006.0	Mm.440089	NM_001015507	ENSMUSG00000040325	Dcaf1	AI447437|B930007L02Rik|Vprbp|mKIAA0800	DDB1 and CUL4 associated factor 1	protein-coding	130.0	343.5	214.5	109.5	213.0	124.0
Merged-chr9-15306211-4	chr9	15305691	15306691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027261)	promoter-TSS (NM_027261)	-23.0	NM_029248	75316.0	Mm.354115	NM_026541	ENSMUSG00000031939	Taf1d	2810003M17Rik|4930553M18Rik|5930426I11Rik|Josd3|TAF(I)41|TAFI41	TATA-box binding protein associated factor, RNA polymerase I, D	protein-coding	0.5	8.0	5.0	3.0	8.5	4.5
Merged-chr5-123148564-2	chr5	123148064	123149064	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001040398, exon 6 of 17)	exon (NM_001040398, exon 6 of 17)	6371.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr12-103445627-2	chr12	103445127	103446127	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1947.0	NM_001281830	76933.0	Mm.271275	NM_029803	ENSMUSG00000079017	Ifi27l2a	2310061N23Rik|Ifi27|Isg12|Isg12(b1)	interferon, alpha-inducible protein 27 like 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4066493-7	chr19	4066030	4067030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-7083.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13964792-4	chr10	13964290	13965290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1285.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	103.0	225.0	192.0	92.0	280.5	160.5
Merged-chr12-8547453-4	chr12	8546941	8547941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177802, intron 2 of 6)	intron (NM_177802, intron 2 of 6)	-7875.0	NM_001286385	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70833758-1	chr8	70833258	70834258	+	1000.0	f1_balb.idr	Intergenic	Intergenic	5962.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	195.5	434.5	374.0	264.0	533.5	386.5
Merged-chr5-72203288-4	chr5	72202780	72203780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153389)	promoter-TSS (NM_153389)	-49.0	NR_003966	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43017052-2	chr17	43016545	43017545	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178589, exon 1 of 6)	exon (NM_178589, exon 1 of 6)	490.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	48.0	137.0	120.5	57.5	104.0	193.0
Merged-chr7-55855797-4	chr7	55855288	55856288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164661, intron 2 of 31)	intron (NM_001164661, intron 2 of 31)	13717.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	4.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6560642-2	chr11	6560142	6561142	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190344, intron 1 of 9)	intron (NM_001190344, intron 1 of 9)	459.0	NM_001190344	216527.0	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	2.0	4.5	3.0	4.0	3.5	4.5
Merged-chr3-95139758-4	chr3	95139263	95140263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106175).2	promoter-TSS (NR_106175).2	-577.0	NR_106175	102465890.0		NR_106175	ENSMUSG00000098498	Mir8099-1	Gm27917|mmu-mir-8099-1	microRNA 8099-1	ncRNA	7.5	12.5	12.5	10.5	10.5	9.5
Merged-chr19-6980058-4	chr19	6979581	6980581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360288)	promoter-TSS (NM_001360288)	5.0	NM_001360286	14227.0	Mm.4234	NM_008020	ENSMUSG00000056629	Fkbp2	mFKBP13|mFKBP2	FK506 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148038999-4	chr4	148038492	148039492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010840)	promoter-TSS (NM_010840)	-85.0	NM_010840	17769.0	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	methylenetetrahydrofolate reductase	protein-coding	7.0	12.5	17.5	3.5	14.5	10.0
Merged-chr9-36767806-4	chr9	36767307	36768307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008408)	promoter-TSS (NM_008408)	-229.0	NM_008408	16430.0	Mm.2863	NM_008408	ENSMUSG00000032116	Stt3a	AA408947|BB081708|Itm1	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	protein-coding	42.5	119.5	89.5	45.5	124.5	118.5
Merged-chr5-103629634-4	chr5	103629150	103630150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029415)	promoter-TSS (NM_029415)	-247.0	NM_029415	75750.0	Mm.7446	NM_029415	ENSMUSG00000029321	Slc10a6	8430417G17Rik|C78479|Soat	solute carrier family 10 (sodium/bile acid cotransporter family), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115600020-4	chr8	115599512	115600512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106882.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-100570121-4	chr9	100569609	100570609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101483, intron 1 of 1)	intron (NM_001101483, intron 1 of 1)	976.0	NM_001101483	245020.0	Mm.236289	NM_001101483	ENSMUSG00000070287	Slc35g2	Gm519|Tmem22	solute carrier family 35, member G2	protein-coding	1.0	3.0	8.0	5.5	0.0	5.0
Merged-chr6-83795771-4	chr6	83795260	83796260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164187, intron 1 of 9)	intron (NM_001164187, intron 1 of 9)	602.0	NM_001164187	56174.0	Mm.190650	NM_019542	ENSMUSG00000034744	Nagk	Gnk	N-acetylglucosamine kinase	protein-coding	12.0	19.5	9.0	0.0	25.5	12.0
Merged-chr7-19665025-4	chr7	19664529	19665529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019649)	promoter-TSS (NM_019649)	1.0	NM_019649	56457.0	Mm.290960	NM_019649	ENSMUSG00000002981	Clptm1	HS9|N14	cleft lip and palate associated transmembrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24750870-4	chr5	24750366	24751366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153076)	TTS (NM_153076)	6977.0	NM_153076	214301.0	Mm.63484	NM_153076	ENSMUSG00000038135	Crygn	-	crystallin, gamma N	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80837932-4	chr7	80837431	80838431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24177.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	24.5	64.0	50.0	28.5	53.0	43.5
Merged-chr9-108848374-4	chr9	108847885	108848885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359572, intron 34 of 35)	intron (NM_001359572, intron 34 of 35)	-5658.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	0.0	6.5	7.0	3.0	5.0	2.0
Merged-chr18-4908344-4	chr18	4907840	4908840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95854.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83997036-4	chr8	83996535	83997535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081415)	promoter-TSS (NM_001081415)	-637.0	NM_001081415	666704.0	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	2.5	3.5	4.5	1.0	3.0	2.0
Merged-chr5-29290274-4	chr5	29289785	29290785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020295, intron 8 of 16)	intron (NM_020295, intron 8 of 16)	88105.0	NM_020295	56873.0	Mm.41572	NM_020295	ENSMUSG00000010721	Lmbr1	1110048D14Rik|AU017641	limb region 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-13278733-4	chr7	13278234	13279234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010715)	promoter-TSS (NM_010715)	-13.0	NM_177312	321008.0	Mm.458832	NM_177312	ENSMUSG00000070814	Zswim9	6330408A02Rik	zinc finger SWIM-type containing 9	protein-coding	6.5	21.5	14.5	6.5	21.5	14.5
Merged-chr9-118610242-4	chr9	118609713	118610713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	3504.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	14.5	98.0	61.0	31.0	50.5	34.0
Merged-chr10-122613808-2	chr10	122613308	122614308	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34531.0	NR_105839	102465223.0		NR_105839	ENSMUSG00000098522	Mir6412	Gm27364|mmu-mir-6412	microRNA 6412	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127635252-4	chr10	127634749	127635749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-7737.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	3.0	7.5	4.5	4.5	0.5	1.5
Merged-chr11-100851143-2	chr11	100850643	100851643	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113563)	promoter-TSS (NM_001113563)	-558.0	NM_001113563	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29497256-4	chr11	29496754	29497754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176841, intron 25 of 31)	intron (NM_176841, intron 25 of 31)	17779.0	NM_026465	67939.0	Mm.251087	NM_026465	ENSMUSG00000032673	Prorsd1	2010316F05Rik|Ncrna00117|Prdxdd1	prolyl-tRNA synthetase domain containing 1	protein-coding	17.0	22.5	14.0	9.5	15.5	15.5
Merged-chr12-85947336-4	chr12	85946810	85947810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 28 of 32)	intron (NM_001347395, intron 28 of 32)	122360.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53859302-4	chr11	53858803	53859803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033332)	promoter-TSS (NR_033332)	-47.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90069239-2	chr3	90068739	90069739	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030543)	promoter-TSS (NR_030543)	-781.0	NR_030543	100124481.0		NR_030543	ENSMUSG00000077996	Mir190b	Mirn190b|mir-190b	microRNA 190b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31116101-2	chr17	31115601	31116601	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009593, exon 15 of 15)	3' UTR (NM_009593, exon 15 of 15)	13510.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	4.5	3.0	4.5	0.0	0.0	0.0
Merged-chr11-20631444-4	chr11	20630944	20631944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001038625)	promoter-TSS (NM_001038625)	-533.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	19.5	53.0	20.0	12.0	39.0	25.0
Merged-chr13-5863045-2	chr13	5862545	5863545	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011803, intron 1 of 3)	intron (NM_011803, intron 1 of 3)	1556.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31217624-4	chr6	31217052	31218052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	C-rich|Low_complexity|Low_complexity	922.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82914994-3	chr18	82914512	82915512	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177464, intron 1 of 5)	intron (NM_001177464, intron 1 of 5)	380.0	NM_001177464	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59189338-4	chr4	59188787	59189787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011673)	promoter-TSS (NM_011673)	-263.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-117517440-4	chr12	117516938	117517938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 1 of 27)	MLT1B|LTR|ERVL-MaLR	959.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-119240543-2	chr10	119240051	119241051	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_027994)	promoter-TSS (NM_027994)	-496.0	NM_027994	71902.0	Mm.203965	NM_027994	ENSMUSG00000020114	Cand1	2310038O07Rik|6330512O03Rik|AI195005|AI846556|D10Ertd516e|Tp120a|mKIAA0829	cullin associated and neddylation disassociated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123616698-2	chr4	123616198	123617198	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105824)	TTS (NR_105824)	278.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104062947-4	chr9	104062312	104063312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175324)	promoter-TSS (NM_175324)	309.0	NM_025692	66663.0	Mm.224935	NM_025692	ENSMUSG00000032557	Uba5	5730525G14Rik|AW240750|Ube1dc1	ubiquitin-like modifier activating enzyme 5	protein-coding	10.0	54.5	40.5	11.5	60.0	34.5
Merged-chr18-74268148-4	chr18	74267654	74268654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013594)	promoter-TSS (NM_013594)	-21.0	NM_001357423	17190.0	Mm.22522	NM_013594	ENSMUSG00000024561	Mbd1	Cxxc3|PCM1	methyl-CpG binding domain protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110003232-4	chr7	110002686	110003686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037959, intron 2 of 2)	intron (NR_037959, intron 2 of 2)	3460.0	NR_037959	69781.0	Mm.440728	NR_037959	ENSMUSG00000101585	1600010M07Rik	-	RIKEN cDNA 1600010M07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-137880397-4	chr3	137879914	137880914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033155, intron 1 of 7)	intron (NM_001033155, intron 1 of 7)	12739.0	NM_001033155	70604.0	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	7.5	9.5	31.0	6.5	6.0	6.0
Merged-chr18-83421975-4	chr18	83421456	83422456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-96072.0	NR_045361	70960.0	Mm.410834	NR_045361		4921531P14Rik	1700108N05Rik	RIKEN cDNA 4921531P14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180314849-4	chr1	180314361	180315361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-15615.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108794455-5	chr12	108793900	108794900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009537, intron 1 of 4)	CpG-3499	1089.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165983154-4	chr2	165982648	165983648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1M|LTR|ERVL-MaLR	-9489.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4187707-2	chr11	4187207	4188207	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	874.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110062071-1	chr7	110061571	110062571	+	1000.0	f0_balb.idr	intron (NM_009281, intron 1 of 15)	CpG	369.0	NM_009281	20841.0	Mm.10815	NM_009281	ENSMUSG00000061079	Zfp143	AA959806|AU015869|D7Ertd805e|KRAB14|SBF|Staf|Zfp79|Zfp80-rs1|Znf143|pHZ-1	zinc finger protein 143	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-144241164-4	chr1	144240703	144241703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	7901.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-174041701-4	chr2	174041200	174042200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-35351.0	NM_172675	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120549702-4	chr11	120549204	120550204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033231)	promoter-TSS (NM_001033231)	23.0	NM_001033231	192173.0	Mm.262300	NM_001033231	ENSMUSG00000061111	Mcrip1	Fam195b	MAPK regulated corepressor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86733398-4	chr6	86732916	86733916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011818)	promoter-TSS (NM_011818)	-38.0	NM_011818	23885.0	Mm.321452	NM_011818	ENSMUSG00000001157	Gmcl1	2810049L19Rik|Btbd13|DIP|Gcl|Gcl-1|glc-1|mglc-1	germ cell-less, spermatogenesis associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146261150-4	chr5	146260661	146261661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153599, intron 2 of 12)	LSU-rRNA_Hsa|rRNA|rRNA	29911.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91947893-4	chr2	91947383	91948383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166597, intron 1 of 31)	intron (NM_001166597, intron 1 of 31)	2465.0	NM_001166597	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107758501-4	chr13	107758009	107759009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	71112.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70012475-2	chr11	70011975	70012975	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029758)	TTS (NR_029758)	432.0	NR_029758	723896.0		NR_029758	ENSMUSG00000065534	Mir324	Mirn324|mir-324|mmu-mir-324	microRNA 324	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-16214152-4	chr4	16213642	16214642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045765, intron 3 of 6)	MTD|LTR|ERVL-MaLR	50032.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	3.5	1.5	3.0	0.5	1.5	1.5
Merged-chr10-77610338-4	chr10	77609846	77610846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301673, intron 2 of 3)	L1MC5|LINE|L1	-3363.0	NR_125903	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8212649-4	chr19	8212152	8213152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172776, intron 2 of 9)	L1_Mus2|LINE|L1	6248.0	NM_172776	236293.0	Mm.440581	NM_172776	ENSMUSG00000075044	Slc22a29	D630002G06Rik	solute carrier family 22. member 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-53505712-4	chr10	53505207	53506207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037973, intron 3 of 3)	intron (NR_037973, intron 3 of 3)	13282.0	NR_037973	100502868.0	Mm.297722	NR_037973	ENSMUSG00000112739	Gm20597	B230314j19	predicted gene, 20597	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-97559855-4	chr13	97559330	97560330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046157)	promoter-TSS (NR_046157)	-170.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90068074-4	chr7	90067578	90068578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38919.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	11.5	35.5	31.0	2.0	9.5	14.0
Merged-chr8-120807237-2	chr8	120806737	120807737	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68598.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-116565094-4	chr10	116564677	116565677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359563, intron 1 of 13)	intron (NM_001359563, intron 1 of 13)	15359.0	NM_001359250	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32712775-4	chr19	32712288	32713288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026487)	promoter-TSS (NM_026487)	-490.0	NM_026487	67979.0	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5723181-2	chr17	5722681	5723681	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 5 of 8)	intron (NM_146073, intron 5 of 8)	-75476.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123026342-4	chr4	123025858	123026858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151450, intron 1 of 9)	intron (NR_151450, intron 1 of 9)	9765.0	NR_151450	66966.0	Mm.235030	NM_025873	ENSMUSG00000028653	Trit1	2310075G14Rik|AI314189|AI314635|AV099619|IPPT|IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31495093-4	chr14	31494567	31495567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359850)	promoter-TSS (NM_001359850)	-12.0	NM_028932	74427.0	Mm.491208	NM_028932	ENSMUSG00000021890	Eaf1	4933403C17Rik|AI666536	ELL associated factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-125791570-4	chr2	125791025	125792025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8655.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	17.5	48.5	47.0	14.5	50.5	46.0
Merged-chr10-67596829-4	chr10	67596358	67597358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24899.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4122071-4	chr19	4121556	4122556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276284)	promoter-TSS (NM_001276284)	-481.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86059604-4	chr1	86059113	86060113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5006.0	NM_027357	70247.0	Mm.280013	NM_027357	ENSMUSG00000026229	Psmd1	2410026J11Rik|P112|S1	proteasome (prosome, macropain) 26S subunit, non-ATPase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34954753-4	chr18	34954249	34955249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010481)	promoter-TSS (NM_010481)	-398.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	78.0	160.0	160.5	94.5	173.5	145.0
Merged-chr5-122653498-3	chr5	122652997	122653997	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038845, intron 2 of 12)	intron (NM_001038845, intron 2 of 12)	3073.0	NM_001284402	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	1.0	0.0	3.0	0.0	1.5	0.0
Merged-chr15-58745653-4	chr15	58745147	58746147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77780.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70616067-4	chr8	70615565	70616565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153074)	promoter-TSS (NM_153074)	-779.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	133.0	356.5	188.5	103.5	210.0	166.5
Merged-chr13-111936583-2	chr13	111936083	111937083	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LFSINE_Vert|SINE|tRNA	68647.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145340117-4	chr6	145339600	145340600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47525.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	199.5	438.0	356.5	232.5	547.5	319.5
Merged-chr15-7134659-3	chr15	7134146	7135146	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113386, intron 2 of 16)	intron (NM_001113386, intron 2 of 16)	5074.0	NM_001358593	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-16365706-4	chr14	16365196	16366196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009409, exon 1 of 36)	exon (NM_009409, exon 1 of 36)	490.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82567541-4	chr11	82567024	82568024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65829.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-40595364-4	chr6	40594858	40595858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9553.0	NM_001038604	23845.0	Mm.103765	NM_021364	ENSMUSG00000029915	Clec5a	Clecsf5|Ly100|MDL-1|Mdl1	C-type lectin domain family 5, member a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115653706-4	chr11	115653209	115654209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 3 of 5)	intron (NM_001313936, intron 3 of 5)	-25414.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4758427-2	chr16	4757927	4758927	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357050, intron 1 of 5)	intron (NM_001357050, intron 1 of 5)	1481.0	NM_001357050	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120519898-4	chr11	120519420	120520420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10807.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-5344260-4	chr9	5343728	5344728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1248.0	NM_009808	12364.0	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-65545716-4	chr4	65545225	65546225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207109, intron 17 of 22)	Lx9|LINE|L1	-59261.0	NM_053084	69807.0	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75842017-4	chr15	75841525	75842525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172121)	promoter-TSS (NM_172121)	-117.0	NM_172121	223642.0	Mm.209800	NM_172121	ENSMUSG00000075600	Zc3h3	BC049953|Kiaa0150|Smicl|Zc3hdc3	zinc finger CCCH type containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41723231-4	chr4	41722733	41723733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016890)	promoter-TSS (NM_016890)	-70.0	NM_016890	53598.0	Mm.29025	NM_016890	ENSMUSG00000028447	Dctn3	p24	dynactin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116389353-3	chr11	116388833	116389833	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027258, intron 2 of 18)	intron (NM_027258, intron 2 of 18)	23699.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59000805-4	chr4	59000285	59001285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2408.0	NM_001033165	72429.0	Mm.317801	NM_001033165	ENSMUSG00000070972	Dnajc25	2010109C08Rik|2010203O07Rik	DnaJ heat shock protein family (Hsp40) member C25	protein-coding	1.0	3.0	1.0	0.5	0.0	1.5
Merged-chr13-73461691-4	chr13	73461201	73462201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5682.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120404681-4	chr2	120404178	120405178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110496)	promoter-TSS (NM_001110496)	-562.0	NM_001110496	211499.0	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49341501-4	chr13	49341015	49342015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029791)	promoter-TSS (NM_029791)	-34.0	NM_001039179	76895.0	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	BICD cargo adaptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-99163236-2	chr11	99162736	99163736	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8159.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-8823859-4	chr16	8823366	8824366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-6234.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76626135-4	chr15	76625644	76626644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305668)	promoter-TSS (NM_001305668)	-60.0	NM_001305668	66914.0	Mm.30028	NM_025842	ENSMUSG00000115987	Vps28	1110014J03Rik|CIIA|D730005C08Rik	vacuolar protein sorting 28	protein-coding	120.0	220.5	187.5	93.5	210.0	218.5
Merged-chr7-34234140-4	chr7	34233592	34234592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3756.0	NM_008155	14751.0	Mm.589	NM_008155	ENSMUSG00000036427	Gpi1	Amf|Gpi|Gpi-1|Gpi-1r|Gpi-1s|Gpi-1t|Gpi1-r|Gpi1-s|Gpi1-t|Gpi1s|MF|NK|NK/GPI|Nlk|Org|Pgi|Phi	glucose phosphate isomerase 1	protein-coding	143.5	176.0	182.5	143.0	211.5	228.5
Merged-chr2-94010775-4	chr2	94010258	94011258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026944)	promoter-TSS (NM_026944)	-28.0	NM_026944	69113.0	Mm.272498	NM_026944	ENSMUSG00000040174	Alkbh3	1700108H04Rik|1810020C19Rik|Abh3|mABH3	alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-21991897-4	chr3	21991401	21992401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84751.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137994756-4	chr4	137994246	137995246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256195, intron 2 of 34)	intron (NM_001256195, intron 2 of 34)	1290.0	NM_172703	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	69.5	164.0	124.0	113.0	306.5	156.0
Merged-chr18-44608177-3	chr18	44607682	44608682	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085373, intron 3 of 18)	intron (NM_001085373, intron 3 of 18)	-53483.0	NR_026853	626275.0	Mm.427116	NR_026853	ENSMUSG00000097610	A930012L18Rik	-	RIKEN cDNA A930012L18 gene	ncRNA	2.5	5.5	0.5	1.5	4.0	0.5
Merged-chr9-57074985-2	chr9	57074485	57075485	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_152107)	TTS (NR_152107)	1064.0	NR_152107	72588.0	Mm.70350	NR_152107		2700012I20Rik	-	RIKEN cDNA 2700012I20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83616765-4	chr11	83616258	83617258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 5 of 8)	intron (NR_036453, intron 5 of 8)	-23671.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-74705268-3	chr5	74704770	74705770	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2367.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr16-10838670-4	chr16	10838174	10839174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162932, intron 1 of 1)	intron (NM_001162932, intron 1 of 1)	3615.0	NM_001162932	223970.0	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121384622-2	chr5	121384122	121385122	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172275, intron 1 of 11)	L1MC4|LINE|L1	787.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	91.0	240.5	156.0	75.5	216.0	134.5
Merged-chr1-165210166-2	chr1	165209666	165210666	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR4_I|LTR|ERVK	-15728.0	NR_151712	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117719138-4	chr10	117718625	117719625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-8367.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133087498-2	chr4	133086998	133087998	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43135.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	3.0	13.0	3.5	2.0	3.5	2.0
Merged-chr11-46810715-4	chr11	46810203	46811203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178759)	promoter-TSS (NM_178759)	-96.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	7.5	38.5	29.0	16.5	34.0	31.5
Merged-chr17-24960822-4	chr17	24960293	24961293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198937)	promoter-TSS (NM_198937)	-170.0	NM_198937	52009.0	Mm.371601	NM_198937	ENSMUSG00000024165	Jpt2	2810430B18Rik|AL022629|C16orf34|D17Ertd441e|Hn1l	Jupiter microtubule associated homolog 2	protein-coding	26.5	42.5	38.0	25.5	57.5	50.5
Merged-chr9-32676739-4	chr9	32676238	32677238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19304.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148527216-4	chr2	148526702	148527702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83667.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142403830-4	chr7	142403338	142404338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15968.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	14.0	25.0	28.0	14.5	38.0	26.5
Merged-chr16-57482445-4	chr16	57481950	57482950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-66792.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	22.0	60.0	22.0	27.5	61.5	16.0
Merged-chr7-98309542-4	chr7	98309040	98310040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025408)	promoter-TSS (NM_025408)	2.0	NM_001360616	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73107963-4	chr17	73107466	73108466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177968)	promoter-TSS (NM_001177968)	-19.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19661815-2	chr7	19661315	19662315	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019649, intron 1 of 13)	intron (NM_019649, intron 1 of 13)	3215.0	NM_019649	56457.0	Mm.290960	NM_019649	ENSMUSG00000002981	Clptm1	HS9|N14	cleft lip and palate associated transmembrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-8286776-2	chr14	8286276	8287276	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23001.0	NM_183187	268709.0	Mm.256058	NM_183187	ENSMUSG00000021750	Fam107a	DRR1	family with sequence similarity 107, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-108847911-4	chr4	108847470	108848470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029571, exon 1 of 1)	exon (NM_029571, exon 1 of 1)	113.0	NM_029571	100087.0	Mm.440007	NM_029571	ENSMUSG00000073775	Kti12	1110001A12Rik|AI326810|AU014758	KTI12 homolog, chromatin associated	protein-coding	13.5	26.5	40.5	16.0	61.5	27.0
Merged-chr8-25012951-4	chr8	25012458	25013458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270996, intron 1 of 21)	PB1D9|SINE|Alu	3964.0	NM_001270996	11502.0	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	21.5	124.5	47.0	18.0	98.5	62.0
Merged-chr3-63976148-4	chr3	63975665	63976665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033300)	promoter-TSS (NM_001033300)	22.0	NM_001033300	229363.0	Mm.331051	NM_001033300	ENSMUSG00000027823	Gmps	670032|AA591640|AI047208|Gm9479	guanine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120108045-4	chr8	120107554	120108554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5A|LINE|L1	-6098.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	31.0	46.5	28.0	9.0	22.0	9.0
Merged-chr17-27907744-4	chr17	27907223	27908223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026836, exon 2 of 6)	5' UTR (NM_026836, exon 2 of 6)	1519.0	NM_026836	68776.0	Mm.267998	NM_026836	ENSMUSG00000024218	Taf11	1110038O14Rik|AI115401|AL024207|AW552398|PRO214|TAF2I|TAFII28	TATA-box binding protein associated factor 11	protein-coding	4.5	6.0	5.0	0.5	3.0	2.5
Merged-chr11-120040619-4	chr11	120040117	120041117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	1164.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	153.5	307.5	223.0	246.0	506.0	380.5
Merged-chr8-33385642-4	chr8	33385142	33386142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001098233)	promoter-TSS (NM_001098233)	-115.0	NM_011721	22427.0	Mm.228805	NM_011721	ENSMUSG00000031583	Wrn	AI846146	Werner syndrome RecQ like helicase	protein-coding	18.5	55.0	51.0	21.0	74.0	34.5
Merged-chr6-120145642-4	chr6	120145127	120146127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-48196.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	20.0	9.5	8.5	0.0	3.0	8.0
Merged-chr10-77522138-4	chr10	77521633	77522633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6320.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-23922417-4	chr1	23921925	23922925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028534)	promoter-TSS (NM_028534)	-44.0	NM_028534	98366.0	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	6.0	32.0	28.0	8.0	25.5	17.5
Merged-chr3-103860254-4	chr3	103859756	103860756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008979)	promoter-TSS (NM_008979)	-21.0	NM_008979	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	29.5	84.0	45.0	31.0	75.0	53.5
Merged-chr18-11697787-2	chr18	11697287	11698287	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081223, intron 6 of 18)	MTD|LTR|ERVL-MaLR	40438.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	6.0	7.0	11.5	0.5	8.5	6.0
Merged-chr4-14865647-4	chr4	14865162	14866162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028264, intron 1 of 6)	intron (NM_028264, intron 1 of 6)	1443.0	NM_028264	72519.0	Mm.279158	NM_028264	ENSMUSG00000028221	Tmem55a	2610319K07Rik|AI315591|AV001360|Pip4p2	transmembrane protein 55A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3221278-4	chr12	3220788	3221788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-14503.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84176332-4	chr12	84175855	84176855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	17660.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38384883-4	chr15	38384369	38385369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84158.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-125966626-1	chr10	125966126	125967126	+	1000.0	f0_balb.idr	exon (NM_177152, exon 1 of 19)	exon (NM_177152, exon 1 of 19)	407.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	0.0	0.5	0.0	0.0	4.5	2.0
Merged-chr4-137954697-1	chr4	137954197	137955197	+	1000.0	f1_balb.idr	intron (NM_199307, intron 15 of 19)	intron (NM_199307, intron 15 of 19)	-38759.0	NM_001256198	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	1.5	15.5	0.5	5.0	4.0	0.5
Merged-chr2-152831524-7	chr2	152831023	152832023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289717)	promoter-TSS (NM_001289717)	205.0	NM_009743	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119424991-4	chr8	119424499	119425499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12163.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81711088-4	chr13	81710645	81711645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028372)	promoter-TSS (NM_028372)	-132.0	NM_001081176	67486.0	Mm.279781	NM_001081176	ENSMUSG00000035834	Polr3g	2310047G20Rik|AV275904|RPC32|RPC7	polymerase (RNA) III (DNA directed) polypeptide G	protein-coding	5.0	15.0	1.5	1.5	0.0	6.0
Merged-chr3-79178232-4	chr3	79177746	79178746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32371.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	33.5	50.5	50.0	23.0	53.5	40.5
Merged-chr9-66945989-4	chr9	66945475	66946475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311101)	promoter-TSS (NM_001311101)	-111.0	NM_001311101	67941.0	Mm.30120	NM_026467	ENSMUSG00000036781	Rps27l	1810034D23Rik	ribosomal protein S27-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5491563-4	chr17	5491089	5492089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1011.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105626397-4	chr5	105625904	105626904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73565.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110426989-4	chr11	110426492	110427492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	27890.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98775024-4	chr10	98774538	98775538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139604.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-8798399-5	chr5	8797872	8798872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152133, exon 1 of 3)	non-coding (NR_152133, exon 1 of 3)	151.0	NR_152133	330031.0	Mm.389059	NR_152132		Gm5106	A230021K14|EG330031	predicted gene 5106	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34639757-4	chr17	34639268	34640268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5115.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	22.5	43.5	64.0	34.5	40.0	41.0
Merged-chr3-69171334-4	chr3	69170803	69171803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40070.0	NR_126533	381452.0	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	0.0	8.5	3.0	0.0	2.0	3.5
Merged-chr14-70766771-4	chr14	70766324	70767324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023045)	promoter-TSS (NM_023045)	-196.0	NM_023045	65246.0	Mm.152987	NM_023045	ENSMUSG00000022100	Xpo7	4930506C02Rik|BB164534|Ranbp16|exp7	exportin 7	protein-coding	37.0	64.5	60.0	30.0	66.0	49.5
Merged-chr3-9341059-3	chr3	9340557	9341557	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62021.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94037123-4	chr8	94036622	94037622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177767)	promoter-TSS (NM_177767)	-76.0	NM_177767	270086.0	Mm.251085	NM_177767	ENSMUSG00000033009	Ogfod1	4930415J21Rik|AA387199|AA939912|AW061076|mKIAA1612	2-oxoglutarate and iron-dependent oxygenase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108902360-4	chr6	108901837	108902837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	73696.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	15.5	21.0	24.5	43.5	104.0	35.5
Merged-chr11-74994308-4	chr11	74993811	74994811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 10 of 18)	intron (NM_001002764, intron 10 of 18)	68439.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	20.0	51.5	28.5	20.0	52.5	29.5
Merged-chr5-142904020-2	chr5	142903520	142904520	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007393, intron 5 of 5)	intron (NM_007393, intron 5 of 5)	2734.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110707814-2	chr9	110707314	110708314	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 2 of 6)	intron (NM_028312, intron 2 of 6)	34796.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12013411-4	chr19	12012916	12013916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23324.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	53.5	135.5	114.5	79.0	117.5	63.0
Merged-chr10-117285133-4	chr10	117284632	117285632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2860.0	NM_017372	17105.0	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125447438-4	chr6	125446928	125447928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47332.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	34.0	70.0	55.0	22.0	39.5	40.0
Merged-chr5-105718480-4	chr5	105717970	105718970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	17660.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86612142-4	chr4	86611643	86612643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173400)	promoter-TSS (NM_173400)	-88.0	NM_173400	230376.0	Mm.74730	NM_173400	ENSMUSG00000038047	Haus6	6230416J20Rik|9830144E06|D4Ertd27e|mKIAA1574	HAUS augmin-like complex, subunit 6	protein-coding	23.0	79.0	27.5	15.0	41.5	36.0
Merged-chr1-193173109-3	chr1	193172609	193173609	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181048)	promoter-TSS (NM_181048)	-360.0	NM_001160360	319266.0	Mm.482460	NM_181048	ENSMUSG00000079144	A130010J15Rik	-	RIKEN cDNA A130010J15 gene	protein-coding	23.0	39.5	43.0	10.5	38.0	20.5
Merged-chr2-121171584-2	chr2	121171084	121172084	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290819)	promoter-TSS (NM_001290819)	416.0	NM_001290824	51885.0	Mm.383499	NM_153387	ENSMUSG00000027263	Tubgcp4	4932441P04Rik|76p|D2Ertd435e|GCP-4	tubulin, gamma complex associated protein 4	protein-coding	30.0	70.0	43.0	30.0	76.0	43.0
Merged-chr18-12236462-4	chr18	12235949	12236949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008720)	promoter-TSS (NM_008720)	-63.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	43.5	156.0	103.0	43.0	146.5	116.0
Merged-chr7-24507526-4	chr7	24507042	24508042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110958, intron 1 of 2)	CpG	455.0	NR_110958	232969.0	Mm.181332	NM_146183	ENSMUSG00000064264	Zfp428	2410005H09Rik|AV271806|AW047854|Znf428	zinc finger protein 428	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114965653-4	chr11	114965155	114966155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5238.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	138.5	235.5	166.5	81.0	168.5	144.5
Merged-chr11-52360196-2	chr11	52359696	52360696	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011694)	promoter-TSS (NM_011694)	-666.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120150419-4	chr7	120149919	120150919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5128.0	NM_011775	22787.0	Mm.6510	NM_011775	ENSMUSG00000030911	Zp2	Zp-2	zona pellucida glycoprotein 2	protein-coding	0.0	0.0	2.0	1.0	0.0	0.0
Merged-chr17-28738145-4	chr17	28737648	28738648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168513, intron 9 of 11)	intron (NM_001168513, intron 9 of 11)	-31169.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-79896107-4	chr17	79895585	79896585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286647)	promoter-TSS (NM_001286647)	38.0	NM_178050	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90040659-4	chr7	90040166	90041166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 3 of 5)	intron (NR_110365, intron 3 of 5)	11507.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	61.5	201.0	96.0	72.5	127.5	137.0
Merged-chr3-103171711-4	chr3	103171251	103172251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026602)	promoter-TSS (NM_026602)	96.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123079858-4	chr5	123079354	123080354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039723, intron 1 of 11)	intron (NM_001039723, intron 1 of 11)	3579.0	NM_001039723	330189.0	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23760874-2	chr13	23760394	23761394	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013550)	TTS (NM_013550)	355.0	NM_178192	326619.0	Mm.228709	NM_178192	ENSMUSG00000060093	Hist1h4a	-	histone cluster 1, H4a	protein-coding	22.0	83.5	48.5	53.5	118.5	73.0
Merged-chr12-73667769-4	chr12	73667287	73668287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	82991.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130001542-4	chr5	130001057	130002057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357027, intron 1 of 2)	intron (NM_001357027, intron 1 of 2)	1492.0	NM_010368	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115933594-4	chr11	115933102	115934102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020483)	promoter-TSS (NM_020483)	-57.0	NM_020483	57230.0	Mm.267810	NM_020483	ENSMUSG00000020755	Sap30bp	2700016D05Rik|Hcngp	SAP30 binding protein	protein-coding	39.5	88.5	86.0	41.5	118.5	67.0
Merged-chr6-87546933-4	chr6	87546458	87547458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13699.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117334235-4	chr11	117333713	117334713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113488, intron 1 of 9)	intron (NM_001113488, intron 1 of 9)	1900.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150583680-4	chr4	150583225	150584225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	68449.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	2.5	19.0	11.0	5.0	21.5	33.0
Merged-chr15-53529668-4	chr15	53529167	53530167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	84612.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124931357-4	chr6	124930864	124931864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170341)	promoter-TSS (NM_001170341)	-24.0	NM_145385	30853.0	Mm.29737	NM_145385	ENSMUSG00000030120	Mlf2	AI256856|AU018944|C77284	myeloid leukemia factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111933785-4	chr8	111933295	111934295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033321)	promoter-TSS (NM_001033321)	18.0	NM_001357348	234740.0	Mm.87513	NM_001033321	ENSMUSG00000031951	Tmem231	4932417I16Rik|Gm178	transmembrane protein 231	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-97111195-4	chr9	97110698	97111698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138756)	promoter-TSS (NM_138756)	-157.0	NM_138756	192287.0	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28867691-2	chr17	28867191	28868191	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034885, intron 1 of 9)	intron (NM_001034885, intron 1 of 9)	9280.0	NM_001034885	433091.0	Mm.328925	NM_001034885	ENSMUSG00000043286	Pnpla1	-	patatin-like phospholipase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-35099999-4	chr4	35099499	35100499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-52056.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124552838-4	chr5	124552332	124553332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026409)	promoter-TSS (NM_026409)	-32.0	NM_001190795	67848.0	Mm.281601	NM_026409	ENSMUSG00000029389	Ddx55	2810021H22Rik|mKIAA1595	DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	protein-coding	11.0	30.5	10.5	12.0	46.0	20.5
Merged-chr10-78087306-4	chr10	78086779	78087779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17911.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111390087-4	chr10	111389591	111390591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83136.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-41615622-4	chr15	41615132	41616132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 2 of 17)	L3|LINE|CR1	166529.0	NM_001358977	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-108001129-4	chr5	108000619	108001619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14042.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-70437655-4	chr18	70437167	70438167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34787.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	22.5	39.5	32.5	16.0	29.0	26.0
Merged-chr5-99232260-2	chr5	99231760	99232760	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 7 of 13)	intron (NM_181318, intron 7 of 13)	20667.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-127472254-4	chr6	127471747	127472747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181402, intron 4 of 8)	intron (NM_181402, intron 4 of 8)	18620.0	NM_001346512	101187.0	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	0.5	2.0	3.0	1.5	1.5	2.0
Merged-chr2-142901565-4	chr2	142901073	142902073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081133)	promoter-TSS (NM_001081133)	-109.0	NM_001355123	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123815648-4	chr9	123815143	123816143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110253, intron 14 of 17)	intron (NM_001110253, intron 14 of 17)	9166.0	NM_030712	80901.0	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26252957-4	chr17	26252443	26253443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025881)	promoter-TSS (NM_025881)	33.0	NR_037905	66978.0	Mm.440216	NM_025881	ENSMUSG00000024188	Luc7l	1810045C04Rik|2410018D03Rik	Luc7-like	protein-coding	13.5	46.0	32.5	14.0	22.0	19.5
Merged-chr5-134099692-4	chr5	134099206	134100206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030719)	promoter-TSS (NM_030719)	-42.0	NM_030719	80909.0	Mm.45218	NM_030719	ENSMUSG00000015944	Gatsl2	7530428J21Rik|AW742413|Castor2|Gats|Gatsl1	GATS protein-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81860261-4	chr7	81859747	81860747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111910, intron 1 of 7)	intron (NR_111910, intron 1 of 7)	1246.0	NM_145375	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151625457-4	chr1	151624959	151625959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	L1MD|LINE|L1	54086.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-19872150-4	chr4	19871600	19872600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50466.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29485475-4	chr19	29484989	29485989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36498.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110448594-4	chr5	110448088	110449088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142642)	promoter-TSS (NM_001142642)	-85.0	NM_001142642	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115420308-4	chr8	115419808	115420808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	286586.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109420225-4	chr11	109419720	109420720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5726.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	23.5	73.5	34.0	17.0	87.0	43.0
Merged-chr9-21149957-4	chr9	21149452	21150452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016742)	promoter-TSS (NM_016742)	-46.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-9131722-4	chr15	9131236	9132236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 2 of 9)	intron (NM_013787, intron 2 of 9)	8718.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53770388-4	chr11	53769876	53770876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159396)	promoter-TSS (NM_001159396)	-97.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99469769-4	chr7	99469260	99470260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028145, intron 2 of 6)	intron (NM_028145, intron 2 of 6)	3756.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	5.0	11.0	30.0	16.5	34.5	6.0
Merged-chr4-137468620-4	chr4	137468106	137469106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008305)	promoter-TSS (NM_008305)	-197.0	NM_008305	15530.0	Mm.273662	NM_008305	ENSMUSG00000028763	Hspg2	AI852380|Pcn|Plc|per	perlecan (heparan sulfate proteoglycan 2)	protein-coding	5.0	8.0	1.0	6.0	3.5	0.0
Merged-chr7-30913219-2	chr7	30912719	30913719	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346086, intron 1 of 12)	intron (NM_001346086, intron 1 of 12)	1102.0	NM_001346089	17136.0	Mm.241355	NM_010758	ENSMUSG00000036634	Mag	Gma|siglec-4a	myelin-associated glycoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16330418-4	chr19	16329895	16330895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 3 of 6)	intron (NM_008139, intron 3 of 6)	-15391.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-119815280-2	chr3	119814780	119815780	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-31892.0	NM_019550	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139175430-4	chr4	139174911	139175911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_033543)	TTS (NR_033543)	5244.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	75.5	238.5	155.0	105.5	310.5	177.5
Merged-chr7-29518652-4	chr7	29518138	29519138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-13178.0	NM_001081028	74206.0	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11635148-4	chr8	11634650	11635650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030781)	promoter-TSS (NR_030781)	-114.0	NR_030781	102334.0	Mm.12459	NM_133971	ENSMUSG00000031508	Ankrd10	4833425P12Rik|AW549277	ankyrin repeat domain 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-43727822-4	chr2	43727313	43728313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21011.0	NM_001301832	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50737777-4	chr16	50737277	50738277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5004.0	NR_028300	68190.0	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120776256-4	chr11	120775765	120776765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7939.0	NM_009053	19719.0	Mm.871	NM_009053	ENSMUSG00000025158	Rfng	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	3.5	0.0	0.0	0.0	2.5	0.0
Merged-chr16-78576745-4	chr16	78576243	78577243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252440)	promoter-TSS (NM_001252440)	-55.0	NM_025967	67102.0	Mm.37332	NM_025967	ENSMUSG00000022864	D16Ertd472e	1700010I10Rik|2310009O17Rik|E330003K22Rik|Eurl	DNA segment, Chr 16, ERATO Doi 472, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129593941-5	chr2	129593400	129594400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291022, intron 1 of 4)	intron (NM_001291022, intron 1 of 4)	731.0	NM_001291022	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	356.5	893.0	568.5	432.5	927.5	624.0
Merged-chr5-121842119-4	chr5	121841618	121842618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5259.0	NM_008507	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	5.5	12.5	7.5	3.5	26.0	13.0
Merged-chr10-68280099-4	chr10	68279557	68280557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1331.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	58.5	151.0	106.5	75.0	204.0	99.5
Merged-chr2-163054532-4	chr2	163054028	163055028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008652)	promoter-TSS (NM_008652)	-107.0	NM_008652	17865.0	Mm.4594	NM_008652	ENSMUSG00000017861	Mybl2	B-Myb|Bmyb	myeloblastosis oncogene-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-86065546-5	chr5	86064973	86065973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007683, exon 1 of 19)	5' UTR (NM_007683, exon 1 of 19)	110.0	NM_001345902	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	90.0	147.0	103.0	59.0	152.5	156.0
Merged-chr13-67484225-4	chr13	67483740	67484740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001076791)	promoter-TSS (NM_001076791)	13.0	NM_001076791	408067.0	Mm.315879	NM_001076791	ENSMUSG00000059839	Zfp874b	9630025I21Rik|Rslcan16	zinc finger protein 874b	protein-coding	42.5	78.0	116.0	38.0	77.5	84.5
Merged-chr5-122881463-2	chr5	122880963	122881963	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003953, intron 17 of 22)	intron (NM_001003953, intron 17 of 22)	18887.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	0.0	0.0	1.5	0.0	0.0	0.5
Merged-chr7-16047882-2	chr7	16047392	16048392	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	CpG	-23953.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6378939-4	chr2	6378441	6379441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181399, intron 1 of 13)	intron (NM_181399, intron 1 of 13)	26205.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-9069066-4	chr5	9068579	9069579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31658.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128364376-4	chr2	128363875	128364875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028590, intron 1 of 2)	intron (NR_028590, intron 1 of 2)	64976.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	12.5	30.0	25.0	8.5	26.0	14.0
Merged-chr5-64834436-4	chr5	64833936	64834936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30913.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119944498-2	chr8	119943998	119944998	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009462, intron 4 of 13)	intron (NM_009462, intron 4 of 13)	34138.0	NM_001310630	22224.0	Mm.256910	NM_009462	ENSMUSG00000031826	Usp10	2610014N07Rik|UBPO|Uchrp|mKIAA0190	ubiquitin specific peptidase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43479102-2	chr4	43478602	43479602	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4607.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32164589-4	chr16	32164130	32165130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146069, intron 1 of 3)	intron (NM_146069, intron 1 of 3)	964.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	47.0	99.0	106.5	45.0	102.5	105.0
Merged-chr16-28911703-4	chr16	28911282	28912282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177718, intron 1 of 1)	intron (NM_177718, intron 1 of 1)	17916.0	NM_177718	239796.0	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding	19.5	103.5	51.0	10.0	35.0	37.0
Merged-chr12-35535069-4	chr12	35534570	35535570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013464)	promoter-TSS (NM_013464)	-81.0	NM_001314027	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	20.0	19.5	23.5	22.0	46.5	26.0
Merged-chr15-59469385-2	chr15	59468885	59469885	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	(T)n|Simple_repeat|Simple_repeat	95187.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	1.0	3.0	0.5	0.5	0.0	0.0
Merged-chr2-144215468-4	chr2	144214965	144215965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26175.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90452973-2	chr2	90452473	90453473	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 13 of 23)	intron (NM_008982, intron 13 of 23)	26201.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-122887127-4	chr4	122886628	122887628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-1052.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	143.0	324.0	178.5	101.5	280.0	167.5
Merged-chr17-48347484-4	chr17	48346993	48347993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031254, intron 1 of 4)	intron (NM_031254, intron 1 of 4)	1092.0	NM_001272078	83433.0	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101979584-4	chr11	101979071	101980071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028207, intron 2 of 2)	intron (NM_028207, intron 2 of 2)	5220.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-63429576-4	chr10	63429084	63430084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177612)	promoter-TSS (NM_177612)	-514.0	NM_177612	216033.0	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82346069-6	chr15	82345637	82346637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026914)	promoter-TSS (NM_026914)	91.0	NM_026914	69029.0	Mm.260042	NM_026914	ENSMUSG00000022452	Smdt1	1500032L24Rik|Emre	single-pass membrane protein with aspartate rich tail 1	protein-coding	12.5	40.5	30.5	12.0	44.5	33.5
Merged-chr7-16071068-4	chr7	16070568	16071568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347559)	promoter-TSS (NM_001347559)	-777.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129596103-4	chr2	129595594	129596594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	632.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	303.5	706.5	553.5	315.0	859.0	629.0
Merged-chr4-123749870-1	chr4	123749370	123750370	+	1000.0	f0_c57.idr	intron (NM_023423, intron 1 of 4)	CpG	429.0	NM_023423	68050.0	Mm.27903	NM_023423	ENSMUSG00000023075	Akirin1	6330407G11Rik	akirin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12445197-4	chr19	12444690	12445690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-15589.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	45.5	152.5	66.0	48.0	182.0	106.0
Merged-chr6-47830557-4	chr6	47830056	47831056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177882)	promoter-TSS (NM_177882)	-51.0	NM_177882	330301.0	Mm.128149	NM_177882	ENSMUSG00000051499	Zfp786	A730012O14Rik|Znf786	zinc finger protein 786	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-55354206-4	chr3	55353702	55354702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357475, intron 3 of 16)	intron (NM_001357475, intron 3 of 16)	-107526.0	NM_001195539	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-70243299-4	chr10	70242789	70243789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1987.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75839323-2	chr14	75838823	75839823	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	5641.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-62847087-4	chr16	62846586	62847586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026577)	promoter-TSS (NM_026577)	-46.0	NM_026577	68146.0	Mm.96833	NM_026577	ENSMUSG00000022911	Arl13b	A530097K21Rik|A930014M17Rik|Arl2l1|C530009C10Rik|hnn	ADP-ribosylation factor-like 13B	protein-coding	13.5	32.0	18.0	3.0	14.5	13.5
Merged-chr2-77946044-4	chr2	77945571	77946571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030560, intron 1 of 20)	CpG	285.0	NM_001290740	80744.0	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65613786-8	chr17	65613274	65614274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013933)	promoter-TSS (NM_013933)	-219.0	NM_013933	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	15.5	46.5	33.5	33.5	84.5	60.5
Merged-chr10-75893251-4	chr10	75892741	75893741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358985)	promoter-TSS (NM_001358985)	-157.0	NR_152573	70377.0	Mm.275878	NM_024440	ENSMUSG00000009092	Derl3	1810006I20Rik|1810063P04Rik|IZP6|derlin-3	Der1-like domain family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20640926-2	chr18	20640426	20641426	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155534, intron 1 of 2)	intron (NR_155534, intron 1 of 2)	-24324.0	NM_013697	22139.0	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53298718-2	chr11	53298218	53299218	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008300, intron 1 of 18)	intron (NM_008300, intron 1 of 18)	1761.0	NM_008300	15525.0	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-60983323-4	chr8	60982806	60983806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007711)	promoter-TSS (NM_007711)	5.0	NM_173873	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	47.0	105.0	89.5	45.5	92.0	121.0
Merged-chr9-5311928-4	chr9	5311427	5312427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007609, intron 1 of 8)	RLTR17|LTR|ERVK	3078.0	NM_007609	12363.0	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82693023-4	chr18	82692530	82693530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177832)	promoter-TSS (NM_177832)	-296.0	NM_177832	329002.0	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8777699-4	chr10	8777208	8778208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	108362.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	50.5	140.5	93.5	68.5	122.5	109.0
Merged-chr7-102565491-4	chr7	102564990	102565990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009277)	promoter-TSS (NM_009277)	-8.0	NM_009277	20821.0	Mm.321227	NM_009277	ENSMUSG00000030966	Trim21	Ro52|Ssa1	tripartite motif-containing 21	protein-coding	0.0	2.0	3.5	2.0	0.0	3.0
Merged-chr2-167944943-3	chr2	167944446	167945446	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	12619.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122028505-4	chr2	122028005	122029005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144545)	promoter-TSS (NM_144545)	-75.0	NM_144545	78655.0	Mm.458184	NM_144545	ENSMUSG00000027236	Eif3j1	1810016I04Rik|2700079K05Rik|AA409117|AA409446|C78575|Eif3j|Eif3j-1|Eif3j-2|Eif3j2|Eif3s1|eIF-3-alpha-A|eIF-3-alpha-B|eIF3-alpha|eIF3-p35|eIF3j-A|eIF3j-B	eukaryotic translation initiation factor 3, subunit J1	protein-coding	58.5	162.5	97.5	97.0	148.0	142.0
Merged-chr4-120854864-4	chr4	120854364	120855364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182929)	promoter-TSS (NM_182929)	65.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	2.0	5.0	5.0	7.5	7.5	6.5
Merged-chr14-103513255-4	chr14	103512749	103513749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022886)	promoter-TSS (NM_022886)	-92.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123427766-4	chr5	123427244	123428244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133917, intron 1 of 16)	intron (NM_133917, intron 1 of 16)	32946.0	NM_177582	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11016721-4	chr4	11016238	11017238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9119.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93688470-4	chr10	93687990	93688990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021320, intron 3 of 9)	intron (NM_021320, intron 3 of 9)	-5168.0	NR_038017	100504069.0	Mm.391412	NR_038017	ENSMUSG00000085723	Gm15915	-	predicted gene 15915	ncRNA	91.0	169.5	105.0	50.5	127.0	87.0
Merged-chr17-37045603-3	chr17	37045106	37046106	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019439)	promoter-TSS (NM_019439)	-360.0	NM_019439	54393.0	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41302778-1	chr10	41302278	41303278	+	1000.0	f0_c57.idr	intron (NM_133999, intron 1 of 22)	intron (NM_133999, intron 1 of 22)	463.0	NM_133999	103199.0	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171268421-3	chr1	171267934	171268934	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-1894.0	NM_020579	57370.0	Mm.274011	NM_020579	ENSMUSG00000052423	B4galt3	9530061M23Rik|AA104562|AW125175|ESTM26|ESTM6|R74981	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	protein-coding	12.0	43.5	31.0	4.5	3.5	3.0
Merged-chr4-126557480-2	chr4	126556980	126557980	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175554, intron 1 of 25)	intron (NM_175554, intron 1 of 25)	500.0	NM_175554	269582.0	Mm.243962	NM_175554	ENSMUSG00000042489	Clspn	B130025E01|C85083|E130314M08Rik	claspin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45920703-4	chr7	45920235	45921235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001146346, exon 1 of 5)	5' UTR (NM_001146346, exon 1 of 5)	114.0	NM_001146346	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60412532-2	chr11	60412032	60413032	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145427, intron 1 of 7)	B1_Mur1|SINE|Alu	4567.0	NM_145427	246782.0	Mm.41651	NM_145427	ENSMUSG00000042709	Atpaf2	ATP12|ATP12p	ATP synthase mitochondrial F1 complex assembly factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32559042-4	chr11	32558542	32559542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	25776.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	25.0	50.5	41.0	33.5	50.5	26.5
Merged-chr1-162574301-4	chr1	162573781	162574781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016796, intron 1 of 7)	intron (NM_016796, intron 1 of 7)	3453.0	NM_016796	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	47.5	106.5	80.5	37.5	87.0	93.5
Merged-chr10-78356154-4	chr10	78355669	78356669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4469.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25042149-2	chr8	25041696	25042696	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_031257, exon 12 of 12)	3' UTR (NM_031257, exon 12 of 12)	-3234.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	5.5	5.5	3.0	1.5	4.5	3.5
Merged-chr8-94901374-2	chr8	94900874	94901874	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16724.0	NM_001033533	234582.0	Mm.277871	NM_001033533	ENSMUSG00000063605	Ccdc102a	BC027663|Gm586	coiled-coil domain containing 102A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49929907-4	chr16	49929410	49930410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25920.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-10430096-4	chr3	10429584	10430584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127191, intron 4 of 6)	intron (NM_001127191, intron 4 of 6)	10046.0	NM_029068	74718.0	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13160882-4	chr8	13160375	13161375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010684, intron 1 of 8)	intron (NM_010684, intron 1 of 8)	1714.0	NM_010684	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-29984937-4	chr13	29984446	29985446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289920)	promoter-TSS (NM_001289920)	-555.0	NM_001359994	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55623611-4	chr16	55623100	55624100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	128869.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-28750437-4	chr12	28749937	28750937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178811)	promoter-TSS (NM_178811)	16.0	NM_001161411	217449.0	Mm.132006	NM_178811	ENSMUSG00000020628	Trappc12	CGI-87|D930014A20Rik|Ttc15	trafficking protein particle complex 12	protein-coding	146.5	358.5	280.5	128.0	338.0	280.5
Merged-chr5-140197924-2	chr5	140197424	140198424	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152617, intron 10 of 16)	intron (NR_152617, intron 10 of 16)	-23006.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	2.5	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111445280-2	chr12	111444780	111445780	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009396, exon 2 of 12)	exon (NM_009396, exon 2 of 12)	2619.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90545466-4	chr2	90544961	90545961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	35186.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	92.0	148.0	96.5	81.5	179.5	116.0
Merged-chr4-152176819-4	chr4	152176331	152177331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1269.0	NM_133348	70025.0	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	0.0	0.0	1.5	0.0	5.5	4.5
Merged-chr2-132027616-4	chr2	132027141	132028141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175445, intron 1 of 10)	intron (NM_175445, intron 1 of 10)	2347.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86435878-2	chr1	86435378	86436378	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9549.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-26586208-4	chr11	26585701	26586701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027260, intron 2 of 12)	intron (NM_027260, intron 2 of 12)	7719.0	NM_027260	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	97.0	188.0	174.0	79.5	143.5	137.5
Merged-chr7-137413363-2	chr7	137412863	137413863	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2607.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104794672-4	chr3	104794162	104795162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291859)	TTS (NM_001291859)	5628.0	NM_001291859	11853.0	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-82824529-4	chr6	82824049	82825049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50095.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171129492-4	chr1	171128988	171129988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025321, exon 6 of 6)	3' UTR (NM_025321, exon 6 of 6)	7827.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128529073-5	chr10	128528584	128529584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3225.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86669462-4	chr4	86668970	86669970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007408, intron 1 of 7)	intron (NM_007408, intron 1 of 7)	589.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	59.5	127.0	83.0	75.0	102.0	72.5
Merged-chr16-11069501-2	chr16	11069001	11070001	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009223, intron 1 of 1)	intron (NM_009223, intron 1 of 1)	3203.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126260975-2	chr7	126260475	126261475	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360811, intron 1 of 3)	intron (NM_001360811, intron 1 of 3)	-11521.0	NM_145587	104175.0	Mm.29660	NM_145587	ENSMUSG00000042978	Sbk1	Sbk	SH3-binding kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-86704809-4	chr10	86704323	86705323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001003939)	promoter-TSS (NM_001003939)	621.0	NM_011631	22027.0	Mm.87773	NM_011631	ENSMUSG00000020048	Hsp90b1	ERp99|GRP94|TA-3|Targ2|Tra-1|Tra1|endoplasmin|gp96	heat shock protein 90, beta (Grp94), member 1	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr18-62046513-4	chr18	62046008	62047008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	93433.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	154.5	307.5	206.0	158.0	284.5	182.5
Merged-chr1-178187505-4	chr1	178187020	178188020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_024282, exon 1 of 5)	5' UTR (NM_024282, exon 1 of 5)	103.0	NM_024282	78825.0	Mm.440132	NM_024282	ENSMUSG00000026502	Desi2	5830417C01Rik|DeSI-2|Fam152a|Pppde1	desumoylating isopeptidase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107333658-4	chr3	107333172	107334172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045807)	promoter-TSS (NM_001045807)	-383.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94964687-2	chr11	94964187	94965187	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009161, intron 9 of 10)	intron (NM_009161, intron 9 of 10)	-2906.0	NM_018792	54388.0	Mm.30482	NM_018792	ENSMUSG00000038994	Hils1	H1.9|TISP64	histone H1-like protein in spermatids 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99651706-4	chr15	99651205	99652205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012025)	promoter-TSS (NM_012025)	-49.0	NM_001253809	26934.0	Mm.273804	NM_012025	ENSMUSG00000023015	Racgap1	AI227039|AI327394|Band25|GTPase|MgcRacGAP|gtl11|mKIAA1478	Rac GTPase-activating protein 1	protein-coding	0.0	4.5	1.0	0.5	0.0	0.0
Merged-chr5-23410306-4	chr5	23409730	23410730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24123.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	11.0	43.5	4.0	6.5	16.5	6.0
Merged-chr16-96208588-4	chr16	96208092	96209092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015825, intron 2 of 7)	intron (NM_015825, intron 2 of 7)	8122.0	NM_015825	50795.0	Mm.28638	NM_015825	ENSMUSG00000040666	Sh3bgr	5430437A18Rik	SH3-binding domain glutamic acid-rich protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173419152-4	chr1	173418637	173419637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1467.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	110.0	231.5	169.5	81.5	224.5	161.0
Merged-chr18-61452002-4	chr18	61451523	61452523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32584.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139352490-4	chr4	139351971	139352971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039200)	promoter-TSS (NM_001039200)	105.0	NM_001290810	69902.0	Mm.27871	NM_023536	ENSMUSG00000028741	Mrto4	2610012O22Rik|Mg684|Mrt4	mRNA turnover 4, ribosome maturation factor	protein-coding	41.5	135.5	78.0	54.5	92.5	78.0
Merged-chr17-27612187-4	chr17	27611692	27612692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019837, intron 1 of 4)	intron (NM_019837, intron 1 of 4)	10772.0	NM_001291046	56409.0	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	1.0	8.0	1.5	1.5	0.0	2.5
Merged-chr17-35838329-4	chr17	35837829	35838829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011655)	promoter-TSS (NM_011655)	-28.0	NM_011655	22154.0	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	11.0	20.0	15.0	4.0	14.0	11.5
Merged-chr1-39478707-4	chr1	39478202	39479202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357522)	promoter-TSS (NM_001357522)	45.0	NM_018775	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106415999-4	chr8	106415521	106416521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011764, intron 1 of 3)	intron (NM_011764, intron 1 of 3)	682.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39055271-4	chr6	39054756	39055756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 9 of 12)	intron (NM_011539, intron 9 of 12)	12330.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91589123-4	chr12	91588608	91589608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175335, intron 1 of 8)	intron (NM_175335, intron 1 of 8)	541.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91955068-4	chr1	91954563	91955563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207225, intron 22 of 26)	intron (NM_207225, intron 22 of 26)	153602.0	NM_007855	13345.0	Mm.9474	NM_007855	ENSMUSG00000007805	Twist2	Dermo1|bHLHa39	twist basic helix-loop-helix transcription factor 2	protein-coding	1.5	6.5	2.5	1.5	2.0	1.5
Merged-chr14-52267536-3	chr14	52267043	52268043	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172601, intron 5 of 7)	L1MB3|LINE|L1	-11603.0	NM_023434	268741.0	Mm.246237	NM_023434	ENSMUSG00000016831	Tox4	5730589K01Rik|A630040M18|AA410149|LCP1	TOX high mobility group box family member 4	protein-coding	18.5	57.0	70.0	1.0	14.0	7.0
Merged-chr13-41097853-4	chr13	41097378	41098378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12110.0	NM_008104	107889.0	Mm.1399	NM_008104	ENSMUSG00000021362	Gcm2	Gcm-rs1|Gcm1|Gcm1-rs2	glial cells missing homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8663928-4	chr15	8663423	8664423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148938, intron 3 of 9)	L3|LINE|CR1	46884.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-57377605-4	chr1	57377099	57378099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037999)	promoter-TSS (NR_037999)	-21.0	NM_028546	73467.0	Mm.263673	NM_028546	ENSMUSG00000038323	1700066M21Rik	AI428479	RIKEN cDNA 1700066M21 gene	protein-coding	40.0	93.5	78.5	39.0	92.5	54.5
Merged-chr4-41569671-4	chr4	41569200	41570200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159583)	promoter-TSS (NM_001159583)	-94.0	NM_175138	68922.0	Mm.79127	NM_175138	ENSMUSG00000061322	Dnaic1	1110066F04Rik|BB124644|Dnai1|b2b1526Clo	dynein, axonemal, intermediate chain 1	protein-coding	15.5	8.0	6.5	1.0	10.0	2.0
Merged-chr5-135778518-4	chr5	135778003	135779003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008617)	promoter-TSS (NM_008617)	-118.0	NM_001289557	76571.0	Mm.247666	NM_029659	ENSMUSG00000019178	Styxl1	1700011C14Rik|Dusp24|Mkstyx	serine/threonine/tyrosine interacting-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34372807-4	chr2	34372320	34373320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016768)	promoter-TSS (NM_016768)	-775.0	NM_016768	18516.0	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-13940632-4	chr17	13940094	13941094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7779.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80709729-3	chr18	80709226	80710226	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 1 of 9)	intron (NM_198429, intron 1 of 9)	-1553.0	NM_001164112	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0.5	4.0	6.5	0.0	2.0	0.5
Merged-chr9-111579739-4	chr9	111579258	111580258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016853, intron 8 of 10)	B4|SINE|B4	110590.0	NM_016853	20840.0	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding	2.0	1.0	2.5	0.0	0.0	0.5
Merged-chr4-135273855-2	chr4	135273355	135274355	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1095.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80406803-4	chr10	80406269	80407269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025650)	promoter-TSS (NM_025650)	52.0	NM_025650	66594.0	Mm.379119	NM_025650	ENSMUSG00000020163	Uqcr11	0710008D09Rik|AL022707|Uqcr	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80582754-4	chr15	80582254	80583254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289442, intron 1 of 7)	L3|LINE|CR1	10157.0	NM_001289442	17444.0	Mm.12947	NM_010815	ENSMUSG00000042351	Grap2	GRAP-2|GRB2L|GRBLG|GRID|Gads|GrbX|Grf40|GrpL|Mona|P38	GRB2-related adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47531778-2	chr9	47531278	47532278	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	CpG	1426.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0.0	18.5	17.0	0.0	0.0	15.0
Merged-chr2-3707380-2	chr2	3706880	3707880	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6078.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157561365-4	chr2	157560850	157561850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010923, intron 2 of 2)	intron (NM_010923, intron 2 of 2)	1272.0	NM_180960	18111.0	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-64745806-2	chr8	64745306	64746306	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178633, intron 13 of 14)	intron (NM_178633, intron 13 of 14)	-12228.0	NM_025436	66234.0	Mm.30119	NM_025436	ENSMUSG00000031604	Msmo1	1500001G16Rik|C78600|DESP4|ERG25|Sc4mol	methylsterol monoxygenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-80949253-4	chr13	80948755	80949755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_103550)	TTS (NR_103550)	8852.0	NR_103550	71416.0	Mm.415500	NR_103550		5430425K12Rik	-	RIKEN cDNA 5430425K12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96413989-1	chr11	96413489	96414489	+	1000.0	f0_balb.idr	Intergenic	Intergenic	48231.0	NM_008266	15407.0	Mm.890	NM_008266	ENSMUSG00000018973	Hoxb1	Hox-2.9	homeobox B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3869354-2	chr12	3868854	3869854	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 4 of 22)	intron (NM_007872, intron 4 of 22)	-7110.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53154988-4	chr4	53154484	53155484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	4911.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130000946-4	chr5	130000461	130001461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357027, intron 1 of 2)	intron (NM_001357027, intron 1 of 2)	2088.0	NM_010368	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	13.0	14.5	45.5	21.0	26.0	25.0
Merged-chr2-80067357-1	chr2	80066857	80067857	+	1000.0	f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	B2_Mm2|SINE|B2	-28455.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.0	0.0	0.5	1.0	0.0	0.0
Merged-chr3-84827949-4	chr3	84827452	84828452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177773, intron 1 of 13)	intron (NM_001177773, intron 1 of 13)	12375.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	18.5	15.5	24.0	8.0	38.5	49.5
Merged-chr13-23563300-4	chr13	23562791	23563791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178205)	promoter-TSS (NM_178205)	-926.0	NM_178205	319151.0	Mm.261658	NM_178205	ENSMUSG00000069273	Hist1h3e	H3-f|H3.1	histone cluster 1, H3e	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51946366-4	chr13	51945874	51946874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99699.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128891221-4	chr6	128890729	128891729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001254946)	promoter-TSS (NM_001254946)	-105.0	NM_001254946	232406.0	Mm.30745	NM_001254946	ENSMUSG00000090164	BC035044	-	cDNA sequence BC035044	protein-coding	4.5	29.0	18.0	21.5	90.0	19.5
Merged-chr2-28401876-4	chr2	28401377	28402377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46064.0	NM_001005420	241289.0	Mm.330095	NM_001005420	ENSMUSG00000035829	Ppp1r26	Gm347|Kiaa0649|mKIAA0649	protein phosphatase 1, regulatory subunit 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55553576-4	chr1	55553066	55554066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	147620.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	3.0	3.5	8.5	6.5	16.5	6.5
Merged-chr3-9028118-4	chr3	9027624	9028624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23401.0	NM_001357075	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	88.5	209.5	129.5	54.0	112.5	70.5
Merged-chr14-63438194-4	chr14	63437740	63438740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177628, intron 1 of 3)	ID_B1|SINE|B4	1846.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103258437-4	chr15	103257966	103258966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302341)	promoter-TSS (NM_001302341)	-63.0	NM_001302341	18022.0	Mm.457989	NM_008685	ENSMUSG00000058794	Nfe2	NF-E2|NF-E2/P45|p45|p45NFE2|p45nf-e2	nuclear factor, erythroid derived 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117946766-4	chr11	117946269	117947269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22597.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23673644-4	chr17	23673163	23674163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181821)	promoter-TSS (NM_181821)	55.0	NM_181821	353502.0	Mm.359030	NM_181821	ENSMUSG00000023904	Hcfc1r1	HPIP	host cell factor C1 regulator 1 (XPO1-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-6383295-4	chr7	6382783	6383783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175247)	promoter-TSS (NM_175247)	-35.0	NM_175247	22690.0	Mm.127014	NM_175247	ENSMUSG00000062861	Zfp28	2810438M17Rik|Zfp-28|mkr-5	zinc finger protein 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31655660-2	chr17	31655113	31656113	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024187, intron 1 of 7)	intron (NM_024187, intron 1 of 7)	3141.0	NM_024187	108121.0	Mm.379289	NM_024187	ENSMUSG00000061613	U2af1	2010107D16Rik	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1	protein-coding	2.5	3.5	3.0	2.5	3.5	3.0
Merged-chr17-34120491-4	chr17	34119983	34120983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037970)	promoter-TSS (NR_037970)	-583.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	196.5	395.0	263.5	123.0	363.0	234.5
Merged-chr16-16571540-4	chr16	16571039	16572039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	-11320.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128727932-4	chr4	128727427	128728427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195083, intron 1 of 6)	CpG	356.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	72.5	123.0	104.0	62.5	181.5	90.5
Merged-chr5-67302113-4	chr5	67301582	67302582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4873.0	NM_178651	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	26.5	12.0	21.0	7.5	10.0	15.5
Merged-chr3-79531869-4	chr3	79531330	79532330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	35849.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81872397-4	chr15	81871924	81872924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080633)	promoter-TSS (NM_080633)	-39.0	NM_080633	11429.0	Mm.154581	NM_080633	ENSMUSG00000022477	Aco2	Aco-2|Aco3|D10Wsu183e	aconitase 2, mitochondrial	protein-coding	77.0	139.0	130.5	23.0	136.0	101.0
Merged-chr14-120244880-4	chr14	120244384	120245384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30785.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95508988-4	chr10	95508498	95509498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6164.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113494607-4	chr6	113494047	113495047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172487, exon 4 of 4)	exon (NM_172487, exon 4 of 4)	7271.0	NM_172487	210673.0	Mm.133060	NM_172487	ENSMUSG00000045009	Prrt3	6330505P20|B230206N24Rik	proline-rich transmembrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-107986654-1	chr5	107986154	107987154	+	1000.0	f0_c57.idr	intron (NM_026062, intron 1 of 4)	intron (NM_026062, intron 1 of 4)	423.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132263072-4	chr2	132262583	132263583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138651)	promoter-TSS (NM_138651)	-65.0	NM_001291040	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124620661-4	chr2	124620147	124621147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	10351.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5779593-4	chr13	5779083	5780083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78509.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-126836880-4	chr6	126836426	126837426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025358, intron 5 of 10)	RMER6BA|LTR|ERVK	12218.0	NM_025358	66108.0	Mm.29939	NM_025358	ENSMUSG00000000399	Ndufa9	1010001N11Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9	protein-coding	27.0	37.0	41.0	38.0	40.0	42.5
Merged-chr5-29947491-4	chr5	29946989	29947989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65625.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64092319-4	chr9	64091833	64092833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11572.0	NR_040743	76814.0	Mm.243771	NR_040743		Scarletltr	2600006L11Rik	Scarletltr, erythroid developmental long intergenic non-protein coding transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81802574-4	chr15	81802071	81803071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153484)	promoter-TSS (NM_153484)	42.0	NR_155271	100504312.0	Mm.384036	NR_155271	ENSMUSG00000097613	Gm17597	-	predicted gene, 17597	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8858879-4	chr10	8858358	8859358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	27212.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	69.0	96.5	98.5	87.0	136.5	111.5
Merged-chr1-193160510-4	chr1	193160015	193161015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016851, intron 2 of 7)	intron (NM_016851, intron 2 of 7)	7403.0	NM_016851	54139.0	Mm.273695	NM_016851	ENSMUSG00000026638	Irf6	AI876454|E230028I05Rik|mirf6	interferon regulatory factor 6	protein-coding	10.5	24.0	4.0	8.5	12.0	4.0
Merged-chr8-70619836-2	chr8	70619336	70620336	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153074, intron 2 of 2)	IMPB_01|Satellite|Satellite	2992.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	35.0	68.5	49.0	16.0	58.5	45.5
Merged-chr1-131560863-7	chr1	131560383	131561383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	32980.0	NM_175382	108900.0	Mm.31278	NM_175382	ENSMUSG00000055184	Fam72a	2700049P18Rik|P17	family with sequence similarity 72, member A	protein-coding	8.5	33.5	29.0	15.0	21.0	25.0
Merged-chr14-25459217-4	chr14	25458723	25459723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310666)	promoter-TSS (NM_001310666)	38.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29493811-2	chr17	29493311	29494311	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008842, exon 5 of 6)	exon (NM_008842, exon 5 of 6)	2766.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	3.0	21.0	6.5	3.0	21.0	6.5
Merged-chr5-138622840-4	chr5	138622341	138623341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183025)	promoter-TSS (NM_183025)	-18.0	NM_183025	243308.0	Mm.36612	NM_183025	ENSMUSG00000056014	A430033K04Rik	C86988	RIKEN cDNA A430033K04 gene	protein-coding	8.0	36.0	28.0	47.5	19.0	19.0
Merged-chr12-102441200-2	chr12	102440700	102441700	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1387.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	2.5	8.5	14.0	4.0	3.0	2.5
Merged-chr11-83541156-4	chr11	83540650	83541650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10632.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51916235-4	chr11	51915752	51916752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51379.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121741682-4	chr11	121741191	121742191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39264.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91458399-4	chr1	91457914	91458914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011066, intron 1 of 22)	intron (NM_011066, intron 1 of 22)	914.0	NM_011066	18627.0	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	0.0	3.5	1.0	0.0	0.0	0.0
Merged-chr17-67305010-4	chr17	67304509	67305509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	49450.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	165.0	274.0	196.0	48.5	125.0	113.0
Merged-chr12-4505527-4	chr12	4505025	4506025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18588.0	NR_136891	102634330.0	Mm.402324	NR_136891	ENSMUSG00000112422	Gm31938	-	predicted gene, 31938	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65592041-2	chr9	65591541	65592541	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151702, intron 7 of 11)	intron (NR_151702, intron 7 of 11)	4881.0	NM_001357527	208084.0	Mm.211032	NM_172453	ENSMUSG00000041064	Pif1	4631410M14|AI449441	PIF1 5'-to-3' DNA helicase	protein-coding	0.0	4.0	2.0	0.0	0.0	1.5
Merged-chr11-100557742-2	chr11	100557242	100558242	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028918, intron 7 of 11)	intron (NM_028918, intron 7 of 11)	12110.0	NM_028918	74407.0	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78108595-4	chr9	78108092	78109092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023605)	promoter-TSS (NM_023605)	64.0	NM_023605	71538.0	Mm.28584	NM_023605	ENSMUSG00000001366	Fbxo9	9030401P18Rik|AA986398	f-box protein 9	protein-coding	24.5	47.0	35.0	25.0	33.0	51.5
Merged-chr2-25332623-4	chr2	25332128	25333128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027448)	promoter-TSS (NR_027448)	-57.0	NR_027448	100272219.0	Mm.382103	NR_027448	ENSMUSG00000097345	AA543186	-	expressed sequence AA543186	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74930966-4	chr15	74930473	74931473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4-int|LTR|ERVK	-24078.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	102.0	279.5	175.0	44.0	116.5	78.5
Merged-chr14-74772608-2	chr14	74772108	74773108	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 19 of 19)	intron (NM_001033439, intron 19 of 19)	40311.0	NM_016903	13885.0	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34550659-4	chr19	34550155	34551155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355262)	promoter-TSS (NM_001355262)	-39.0	NM_008332	15958.0	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120570089-4	chr4	120569614	120570614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355491)	promoter-TSS (NM_001355491)	162.0	NM_016748	51797.0	Mm.1815	NM_016748	ENSMUSG00000028633	Ctps	Ctps1	cytidine 5'-triphosphate synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102884064-4	chr14	102883589	102884589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98543.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172562309-1	chr1	172561809	172562809	+	1000.0	f1_balb.idr	intron (NM_177723, intron 6 of 6)	intron (NM_177723, intron 6 of 6)	2403.0	NR_027644	240916.0	Mm.71940	NM_177723	ENSMUSG00000049598	Vsig8	A030011M19|EG240916	V-set and immunoglobulin domain containing 8	protein-coding	0.0	4.5	1.0	0.5	0.5	0.0
Merged-chr17-34638106-4	chr17	34637612	34638612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6771.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	101.5	184.0	133.0	98.5	136.5	144.0
Merged-chr2-51972966-4	chr2	51972470	51973470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001141948, exon 1 of 8)	5' UTR (NM_001141948, exon 1 of 8)	238.0	NM_001141949	64685.0	Mm.7491	NM_019401	ENSMUSG00000026946	Nmi	-	N-myc (and STAT) interactor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74698852-2	chr1	74698352	74699352	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001014974)	TTS (NM_001014974)	-14683.0	NM_024264	104086.0	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-20820380-4	chr1	20819885	20820885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008563)	promoter-TSS (NM_008563)	-73.0	NM_008563	17215.0	Mm.4502	NM_008563	ENSMUSG00000041859	Mcm3	AL033361|C80350|Mcmd|P1|P1-MCM3|p1.m	minichromosome maintenance complex component 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31697856-4	chr5	31697364	31698364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181282)	promoter-TSS (NM_181282)	-186.0	NM_181281	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-111721650-4	chr4	111721165	111722165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026470, intron 1 of 12)	intron (NM_026470, intron 1 of 12)	1655.0	NM_026470	67946.0	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding	6.5	13.5	11.0	7.0	21.0	5.5
Merged-chr4-43669287-4	chr4	43668787	43669787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175517)	promoter-TSS (NM_175517)	316.0	NM_001355718	242409.0	Mm.171489	NM_001085508	ENSMUSG00000078716	Tmem8b	4930500O05Rik	transmembrane protein 8B	protein-coding	28.0	60.5	67.5	27.0	61.5	66.5
Merged-chr5-66051815-4	chr5	66051333	66052333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	MIR|SINE|MIR	46346.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69678512-2	chr11	69678012	69679012	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030702, intron 4 of 10)	intron (NM_030702, intron 4 of 10)	3458.0	NM_030702	80886.0	Mm.284592	NM_030702	ENSMUSG00000005204	Senp3	AA408656|Smt3ip|Smt3ip1	SUMO/sentrin specific peptidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151428532-4	chr1	151428015	151429015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025819)	promoter-TSS (NM_025819)	-27.0	NM_026876	98685.0	Mm.289373	NM_026876	ENSMUSG00000053286	Trmt1l	1190005F20Rik|AW226554|C1orf25|Trm1-like|Trm1l	tRNA methyltransferase 1 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6554806-4	chr15	6554332	6555332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25015.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-36476431-2	chr3	36475931	36476931	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105976)	promoter-TSS (NR_105976)	494.0	NM_028183	72282.0	Mm.55317	NM_028183	ENSMUSG00000027713	1810062G17Rik	-	RIKEN cDNA 1810062G17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100848980-2	chr7	100848480	100849480	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358914, intron 6 of 10)	intron (NM_001358914, intron 6 of 10)	14433.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-112239412-4	chr2	112238888	112239888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207206)	promoter-TSS (NM_207206)	-453.0	NM_207206	99010.0	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122132975-4	chr7	122132461	122133461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289845)	promoter-TSS (NM_001289845)	-15.0	NM_001289845	233826.0	Mm.38348	NM_172744	ENSMUSG00000044702	Palb2	BC066140	partner and localizer of BRCA2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-113781075-4	chr9	113780597	113781597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114347, intron 6 of 39)	Lx9|LINE|L1	-12233.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21499333-3	chr16	21498816	21499816	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 21 of 46)	intron (NM_001081366, intron 21 of 46)	76198.0	NM_001285894	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60744801-4	chr18	60744314	60745314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	1932.0	NM_001348101	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	5.5	10.5	15.5	11.5	17.5	30.5
Merged-chr4-89295359-5	chr4	89294871	89295871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009877)	promoter-TSS (NM_009877)	191.0	NR_132431	102633081.0	Mm.409388	NR_132431		Gm12610	ANRIL|Gm12609	predicted gene 12610	ncRNA	1.5	9.0	12.5	5.5	14.5	12.5
Merged-chr1-37478073-4	chr1	37477547	37478547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 5 of 15)	L1MC|LINE|L1	10558.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53944667-4	chr19	53944168	53945168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195338)	promoter-TSS (NM_001195338)	-41.0	NM_001195338	100503572.0	Mm.375091	NM_001195338	ENSMUSG00000084957	Bbip1	2310002J21Rik|2610002B11Rik|4930560M04Rik|Ncrna00081	BBSome interacting protein 1	protein-coding	29.0	40.5	49.5	25.0	39.0	37.5
Merged-chr14-64949961-4	chr14	64949476	64950476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253731)	promoter-TSS (NM_001253731)	-69.0	NM_153414	210925.0	Mm.71332	NM_153414	ENSMUSG00000021975	Ints9	BC028953|D14Ertd231e	integrator complex subunit 9	protein-coding	1.0	6.0	8.5	3.0	11.0	13.0
Merged-chr3-105014426-2	chr3	105013926	105014926	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 3 of 5)	intron (NM_030249, intron 3 of 5)	38527.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11066251-4	chr16	11065754	11066754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009223)	promoter-TSS (NM_009223)	-44.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44474324-4	chr19	44473819	44474819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19153.0	NM_011720	22423.0	Mm.88365	NM_011720	ENSMUSG00000036961	Wnt8b	-	wingless-type MMTV integration site family, member 8B	protein-coding	12.5	0.0	2.0	2.5	1.0	2.0
Merged-chr19-61227882-4	chr19	61227364	61228364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009970, intron 1 of 11)	CpG-7695	554.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	181.5	469.5	310.0	148.0	449.5	243.0
Merged-chr5-142463914-4	chr5	142463425	142464425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172725)	promoter-TSS (NM_172725)	-6.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41741400-4	chr4	41740898	41741898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286551)	promoter-TSS (NM_001286551)	-39.0	NM_001286551	18391.0	Mm.425181	NM_011014	ENSMUSG00000036078	Sigmar1	Oprs1|Sig1R|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding	0.0	0.0	3.0	5.5	0.0	1.0
Merged-chr12-100729207-4	chr12	100728705	100729705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4085.0	NM_153587	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	24.5	20.5	20.5	22.5	20.0	30.5
Merged-chr7-126692514-2	chr7	126692014	126693014	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029420, exon 3 of 6)	exon (NM_029420, exon 3 of 6)	3269.0	NM_029420	75764.0	Mm.280573	NM_029420	ENSMUSG00000059772	Slx1b	1110030E23Rik|2410170E21Rik|4833422P03Rik|AI853643|Giyd1|Giyd2	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-24529543-2	chr18	24529043	24530043	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360807, intron 1 of 7)	CpG	661.0	NM_144861	225283.0	Mm.28427	NM_144861	ENSMUSG00000040446	Rprd1a	C77387|mKIAA4077	regulation of nuclear pre-mRNA domain containing 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45906925-4	chr9	45906424	45907424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310839)	promoter-TSS (NM_001310839)	-13.0	NM_001361112	235315.0	Mm.220945	NM_178709	ENSMUSG00000042790	Rnf214	D130054N24Rik	ring finger protein 214	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29251699-4	chr19	29251200	29252200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008413)	promoter-TSS (NM_008413)	-103.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139366649-2	chr5	139366149	139367149	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	ID_B1|SINE|B4	3096.0	NR_029768	723898.0		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50131366-4	chr11	50130843	50131843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290759)	promoter-TSS (NM_001290759)	-17.0	NM_001290759	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31456772-2	chr14	31456272	31457272	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20672.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24698856-4	chr13	24698332	24699332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080381, intron 13 of 14)	intron (NM_001080381, intron 13 of 14)	60184.0	NM_029679	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100426468-4	chr12	100425959	100426959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 5 of 19)	intron (NM_001033213, intron 5 of 19)	94363.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-9140434-4	chr15	9139912	9140912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013787)	promoter-TSS (NM_013787)	42.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86964765-4	chr17	86964279	86965279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	1668.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	11.5	9.5	12.0	4.5	9.5	10.5
Merged-chr6-113638494-4	chr6	113638013	113639013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172161)	promoter-TSS (NM_172161)	46.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19748092-2	chr7	19747592	19748592	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008990, intron 1 of 8)	intron (NM_008990, intron 1 of 8)	1481.0	NM_008990	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53255523-4	chr18	53255037	53256037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	9875.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83884383-4	chr7	83883860	83884860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030705)	promoter-TSS (NM_030705)	-19.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	30.0	63.0	86.5	4.5	10.0	3.0
Merged-chr17-80373538-4	chr17	80373039	80374039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028385)	promoter-TSS (NR_028385)	3.0	NR_028385	791338.0	Mm.204722	NR_028385		Gm10190	-	predicted gene 10190	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-59260947-4	chr3	59260468	59261468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 32 of 43)	intron (NM_177855, intron 32 of 43)	2017.0	NM_027571	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	84.5	104.0	96.5	29.0	83.0	42.5
Merged-chr7-43670285-4	chr7	43669779	43670779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-1752.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151997784-4	chr1	151997277	151998277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 2 of 5)	intron (NM_197990, intron 2 of 5)	92543.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8760065-4	chr11	8759585	8760585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-95550.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22398922-4	chr16	22398442	22399442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358428, intron 9 of 12)	intron (NM_001358428, intron 9 of 12)	39426.0	NM_001358428	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-33433996-4	chr12	33433507	33434507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172253, intron 2 of 3)	intron (NM_172253, intron 2 of 3)	4383.0	NM_172253	28071.0	Mm.196472	NM_172253	ENSMUSG00000020561	Twistnb	2410173G11|2810024J17Rik|D16Wsu83e	twist basic helix-loop-helix transcription factor 1 neighbor	protein-coding	17.5	26.0	33.5	38.5	27.0	38.0
Merged-chr7-116459297-4	chr7	116458766	116459766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15808.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53891844-4	chr11	53891342	53892342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011396)	promoter-TSS (NM_011396)	-139.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122231359-4	chr7	122230867	122231867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HERVL74-int|LTR|ERVL	11871.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80839846-4	chr12	80839355	80840355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178682, intron 2 of 5)	MTE2b|LTR|ERVL-MaLR	49323.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-116975206-4	chr2	116974732	116975732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75080.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54398054-4	chr14	54397546	54398546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	11426.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	43.5	49.0	79.5	40.5	92.5	114.0
Merged-chr17-86798243-2	chr17	86797743	86798743	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010137, intron 2 of 15)	intron (NM_010137, intron 2 of 15)	44379.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12472117-4	chr19	12471616	12472616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172442, intron 8 of 8)	intron (NM_172442, intron 8 of 8)	11337.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	96.0	271.0	248.0	111.0	268.5	181.5
Merged-chr1-134093167-4	chr1	134092708	134093708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-14053.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84147941-4	chr8	84147439	84148439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145970)	promoter-TSS (NM_145970)	-99.0	NM_001163752	74666.0	Mm.33625	NM_029045	ENSMUSG00000008129	4930432K21Rik	-	RIKEN cDNA 4930432K21 gene	protein-coding	9.5	6.5	25.0	29.0	11.0	17.0
Merged-chr19-29064000-4	chr19	29063460	29064460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3341.0	NR_045687	100503337.0	Mm.103412	NR_045687		Gm9895	-	predicted gene 9895	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85838236-4	chr1	85837744	85838744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355046, intron 5 of 9)	intron (NM_001355046, intron 5 of 9)	44227.0	NM_001355047	12283.0	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21717385-4	chr5	21716849	21717849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-15727.0	NM_001359965	242864.0	Mm.153292	NM_178728	ENSMUSG00000044968	Napepld	A530089G06|Mbldc1|NAPE-PLD	N-acyl phosphatidylethanolamine phospholipase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110822563-4	chr12	110822063	110823063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011973, intron 4 of 11)	intron (NM_011973, intron 4 of 11)	18376.0	NM_011973	26448.0	Mm.140948	NM_011973	ENSMUSG00000056458	Mok	RAGE1|Rage|Stk30	MOK protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30952944-4	chr2	30952442	30953442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133673)	promoter-TSS (NM_133673)	-59.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46880004-4	chr17	46879498	46880498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-10623.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138754957-4	chr5	138754421	138755421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030565)	promoter-TSS (NM_030565)	-160.0	NM_030565	80752.0	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45095597-4	chr7	45095097	45096097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357117, intron 4 of 6)	intron (NM_001357117, intron 4 of 6)	-3384.0	NM_001355045	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	2.0	57.5	17.0	6.0	46.5	26.5
Merged-chr16-91461886-4	chr16	91461387	91462387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3217.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	38.5	139.5	86.0	58.5	171.0	94.0
Merged-chr17-35235860-4	chr17	35235339	35236339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023179)	promoter-TSS (NM_023179)	-24.0	NM_010909	18038.0	Mm.300795	NM_010909	ENSMUSG00000042419	Nfkbil1	Def-7|IKBL	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor like 1	protein-coding	99.5	306.0	254.0	93.5	306.0	256.5
Merged-chr5-121618971-4	chr5	121618480	121619480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178799)	promoter-TSS (NM_178799)	-42.0	NM_178799	338350.0	Mm.482918	NM_178799	ENSMUSG00000042647	Acad12	9330129D05Rik	acyl-Coenzyme A dehydrogenase family, member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108829914-4	chr6	108829421	108830421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138677, intron 1 of 11)	intron (NM_138677, intron 1 of 11)	1280.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	2.0	6.5	5.5	11.5	3.0	11.5
Merged-chr4-106839058-4	chr4	106838569	106839569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-34062.0	NM_001347159	329910.0	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	5.5	13.5	3.5	0.0	0.0	0.5
Merged-chr19-10523797-2	chr19	10523297	10524297	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025333, intron 1 of 3)	intron (NM_025333, intron 1 of 3)	1412.0	NM_025333	66072.0	Mm.180063	NM_025333	ENSMUSG00000024668	Sdhaf2	0610038F07Rik|AA407634|AW049997	succinate dehydrogenase complex assembly factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47649733-4	chr14	47649240	47650240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347528, intron 1 of 37)	CpG	429.0	NM_001347524	16709.0	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	7.5	23.5	16.5	10.0	49.5	16.5
Merged-chr15-101246434-4	chr15	101245930	101246930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-20416.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	84.5	122.0	101.0	63.0	221.0	133.5
Merged-chr19-6277826-4	chr19	6277330	6278330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 1 of 4)	intron (NM_010119, intron 1 of 4)	934.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-118419540-4	chr6	118419127	118420127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194339)	promoter-TSS (NM_194339)	-210.0	NM_194339	213895.0	Mm.25269	NM_194339	ENSMUSG00000030138	Bms1	AA408648|AU020092|AU043373|BB007109|BC030906|Bms1l|mKIAA0187	BMS1, ribosome biogenesis factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94961481-4	chr10	94960970	94961970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	-16892.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-21567001-5	chr17	21566492	21567492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357347)	promoter-TSS (NM_001357347)	14.0	NM_001357347	381066.0	Mm.441097	NM_001002008	ENSMUSG00000067931	Zfp948	-	zinc finger protein 948	protein-coding	11.5	91.0	76.0	28.5	71.0	56.0
Merged-chr1-134415392-4	chr1	134414904	134415904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001306069)	promoter-TSS (NM_001306069)	26.0	NM_028320	72674.0	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11771872-2	chr19	11771374	11772374	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025606, intron 2 of 3)	intron (NM_025606, intron 2 of 3)	1459.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	1.0	20.5	3.5	4.0	26.5	7.5
Merged-chr1-131089916-4	chr1	131089408	131090408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	7935.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	53.0	97.0	84.0	63.5	134.5	92.0
Merged-chr9-21525358-4	chr9	21524857	21525857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_206536)	promoter-TSS (NM_206536)	-820.0	NM_001198794	382062.0	Mm.325205	NM_206536	ENSMUSG00000057191	AB124611	Gm1706	cDNA sequence AB124611	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-89981162-4	chr7	89980673	89981673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021876)	promoter-TSS (NM_021876)	-197.0	NM_021876	13626.0	Mm.380914	NM_021876	ENSMUSG00000030619	Eed	l(7)5Rn|l7Rn5|lusk	embryonic ectoderm development	protein-coding	6.0	9.5	7.0	7.0	2.0	0.5
Merged-chr1-64191727-4	chr1	64191235	64192235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70346.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72097507-4	chr6	72097022	72098022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011375)	promoter-TSS (NM_011375)	-86.0	NM_001035228	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121263674-3	chr10	121263179	121264179	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029057)	TTS (NM_029057)	47717.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	21.5	45.0	19.0	22.5	57.5	36.5
Merged-chr12-85532742-4	chr12	85532261	85533261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58871.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99122933-4	chr9	99122423	99123423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 1 of 23)	intron (NM_029094, intron 1 of 23)	17288.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27592072-3	chr7	27591588	27592588	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110208, intron 1 of 13)	CpG	536.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	4.5	26.5	22.5	6.0	10.0	11.0
Merged-chr11-23008380-4	chr11	23007860	23008860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5027.0	NM_028672	73873.0	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134073135-4	chr6	134072621	134073621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	37421.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	43.5	149.5	90.0	61.0	165.5	126.5
Merged-chr9-55149887-4	chr9	55149393	55150393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346658)	promoter-TSS (NM_001346658)	-190.0	NM_001346658	109161.0	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123151279-4	chr5	123150756	123151756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040398, intron 6 of 16)	MIR|SINE|MIR	9063.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	5.0	2.5	1.5	1.5	1.5	10.5
Merged-chr4-46304941-4	chr4	46304436	46305436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-39258.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	9.5	8.5	12.0	0.0	11.5	12.0
Merged-chr3-105840030-4	chr3	105839533	105840533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24466.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93032154-4	chr16	93031637	93032637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-206063.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90216560-4	chr9	90216072	90217072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 9 of 12)	intron (NM_194334, intron 9 of 12)	53594.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	9.5	15.5	18.5	3.0	17.5	20.5
Merged-chr17-55892039-4	chr17	55891520	55892520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145490)	promoter-TSS (NM_145490)	-73.0	NM_001360136	224893.0	Mm.294853	NM_145490	ENSMUSG00000003198	Zfp959	-	zinc finger protein 959	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4195807-4	chr11	4195310	4196310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	8977.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114364866-4	chr6	114364351	114365351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-33085.0	NM_001317125	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100626786-4	chr11	100626292	100627292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028024, exon 4 of 4)	3' UTR (NM_028024, exon 4 of 4)	3837.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	4.0	12.0	12.5	5.0	22.0	17.0
Merged-chr6-97463947-4	chr6	97463432	97464432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-4646.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	178.0	454.0	266.5	199.5	430.5	273.0
Merged-chr2-70978486-4	chr2	70977992	70978992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 5 of 9)	intron (NM_145524, intron 5 of 9)	39882.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4503969-4	chr7	4503465	4504465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011618)	TTS (NM_011618)	-2285.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58727194-4	chr1	58726679	58727679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 2 of 8)	intron (NM_001355056, intron 2 of 8)	-3373.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-139454677-4	chr1	139454186	139455186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009791)	promoter-TSS (NM_009791)	-87.0	NM_009791	12316.0	Mm.168523	NM_009791	ENSMUSG00000033952	Aspm	Calmbp1|D330028K02Rik|MCPH5|Sha1	abnormal spindle microtubule assembly	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-156204037-4	chr4	156203528	156204528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030671, exon 1 of 1)	non-coding (NR_030671, exon 1 of 1)	744.0	NR_030671	100382.0	Mm.461024	NR_030671		AW011738	-	expressed sequence AW011738	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45405812-4	chr9	45405297	45406297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007503)	promoter-TSS (NM_007503)	-280.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140621644-2	chr5	140621144	140622144	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175274, exon 14 of 14)	3' UTR (NM_175274, exon 14 of 14)	14303.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124913441-4	chr6	124912951	124913951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026988)	TTS (NM_026988)	-1746.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-33903837-4	chr1	33903327	33904327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 1 of 6)	intron (NM_177235, intron 1 of 6)	3794.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5728912-2	chr17	5728412	5729412	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 7 of 8)	intron (NM_146073, intron 7 of 8)	-69745.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100688162-2	chr15	100687662	100688662	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033612)	promoter-TSS (NM_033612)	-242.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167093687-4	chr2	167093209	167094209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28416.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-58999151-4	chr6	58998646	58999646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153574, intron 2 of 17)	intron (NM_153574, intron 2 of 17)	25356.0	NM_153574	58909.0	Mm.28813	NM_153574	ENSMUSG00000037709	Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75929451-2	chr15	75928951	75929951	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357005, intron 1 of 10)	intron (NM_001357005, intron 1 of 10)	279.0	NM_031201	22122.0	Mm.22596	NM_031201	ENSMUSG00000022570	Tsta3	AI256181|FX|Tstap35b	tissue specific transplantation antigen P35B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-105177369-4	chr14	105176858	105177858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134077)	promoter-TSS (NM_134077)	-31.0	NM_134077	74213.0	Mm.474531	NM_134077	ENSMUSG00000022119	Rbm26	1700009P03Rik|AI447318|C230097K14Rik|C86225|MLZ-393|Pro1777|Se70-2	RNA binding motif protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57131253-4	chr9	57130751	57131751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102289)	promoter-TSS (NR_102289)	39.0	NR_102289	76794.0	Mm.472839	NR_102289	ENSMUSG00000086728	Man2c1os	2410133F24Rik|AI851351	mannosidase, alpha, class 2C, member 1, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55107785-2	chr14	55107285	55108285	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177049, exon 6 of 6)	3' UTR (NM_177049, exon 6 of 6)	-1192.0	NM_007455	11766.0	Mm.238879	NM_007455	ENSMUSG00000040701	Ap1g2	Adtg2|G2ad	adaptor protein complex AP-1, gamma 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30690533-4	chr2	30690025	30691025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12514.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97018165-4	chr7	97017671	97018671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153591, intron 6 of 13)	intron (NM_153591, intron 6 of 13)	-63580.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	8.5	2.0	4.0	2.0	2.0	3.5
Merged-chr16-32972686-4	chr16	32972195	32973195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081255, intron 6 of 20)	intron (NM_001081255, intron 6 of 20)	58595.0	NM_001310672	70144.0	Mm.491178	NM_001081255	ENSMUSG00000022801	Lrch3	2210409B11Rik|AW215594|Gm1742	leucine-rich repeats and calponin homology (CH) domain containing 3	protein-coding	6.5	17.0	9.0	9.5	10.5	13.5
Merged-chr9-86592858-4	chr9	86592366	86593366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008615, intron 12 of 13)	intron (NM_008615, intron 12 of 13)	20813.0	NM_027100	69519.0	Mm.272517	NM_027100	ENSMUSG00000032417	Rwdd2a	1700030C20Rik|AI848608|Rwdd2	RWD domain containing 2A	protein-coding	14.5	6.0	10.5	22.0	7.5	8.5
Merged-chr3-59211922-4	chr3	59211423	59212423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	-1041.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133546052-4	chr4	133545523	133546523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010948)	promoter-TSS (NM_010948)	4.0	NM_010948	18221.0	Mm.69	NM_010948	ENSMUSG00000028851	Nudc	SIG-92|Silg92	nudC nuclear distribution protein	protein-coding	9.0	32.0	14.5	4.0	36.0	14.0
Merged-chr9-32591897-4	chr9	32591391	32592391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50439.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75763469-4	chr2	75762952	75763952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58789.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	52.0	93.5	54.5	14.0	37.0	35.0
Merged-chr3-51182711-4	chr3	51182222	51183222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41725.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	41.5	79.0	50.0	23.5	20.5	31.0
Merged-chr12-69446623-6	chr12	69446132	69447132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28918.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	110.0	223.0	236.0	127.0	279.5	259.5
Merged-chr13-112927019-2	chr13	112926519	112927519	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172594)	promoter-TSS (NM_172594)	361.0	NM_028151	72198.0	Mm.291029	NM_028151	ENSMUSG00000016018	Skiv2l2	2610528A15Rik|Mtrex|mKIAA0052	superkiller viralicidic activity 2-like 2 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-94933023-4	chr3	94932554	94933554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009150)	promoter-TSS (NM_009150)	-29.0	NM_009150	20341.0	Mm.196558	NM_009150	ENSMUSG00000068874	Selenbp1	Lp56|Lpsb|MTO|SBP56	selenium binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86533941-2	chr1	86533441	86534441	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	7384.0	NM_001360830	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20140239-4	chr13	20139750	20140750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	49743.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	15.5	48.5	35.0	12.5	51.0	27.5
Merged-chr9-15711804-2	chr9	15711304	15712304	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172289, intron 1 of 10)	intron (NM_172289, intron 1 of 10)	2066.0	NM_172289	234967.0	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131976763-4	chr1	131976279	131977279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145977, exon 2 of 5)	5' UTR (NM_145977, exon 2 of 5)	6170.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148656176-4	chr4	148655679	148656679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085505, intron 3 of 10)	intron (NM_001085505, intron 3 of 10)	12862.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	45.5	96.5	103.0	28.0	110.0	74.5
Merged-chr12-17750558-2	chr12	17750058	17751058	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	59749.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	3.0	4.0	4.0	1.5	0.5	0.0
Merged-chr2-158167855-4	chr2	158167364	158168364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21472.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49200822-4	chr13	49200330	49201330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13283.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-43462467-4	chr6	43461995	43462995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045988, intron 1 of 2)	intron (NR_045988, intron 1 of 2)	20066.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-52439029-4	chr4	52438568	52439568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301412)	promoter-TSS (NM_001301412)	-104.0	NR_045175	72648.0	Mm.391869	NR_045175	ENSMUSG00000085763	Smc2os	2700081L22Rik	structural maintenance of chromosomes 2, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-59346347-2	chr19	59345847	59346847	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033222)	promoter-TSS (NM_001033222)	-567.0	NM_001033222	107368.0	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32819512-2	chr12	32819012	32820012	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021524)	promoter-TSS (NM_021524)	-823.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	57.0	121.5	69.0	40.5	115.0	64.5
Merged-chr19-5688938-4	chr19	5688387	5689387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022012)	promoter-TSS (NM_022012)	21.0	NM_144868	104401.0	Mm.329650	NM_144868	ENSMUSG00000054874	Pcnx3	Pcnxl3|mKIAA4073	pecanex homolog 3	protein-coding	114.0	229.0	195.0	89.5	142.0	123.0
Merged-chr2-38926367-4	chr2	38925853	38926853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010264, exon 1 of 11)	5' UTR (NM_010264, exon 1 of 11)	108.0	NM_010264	14536.0	Mm.439703	NM_010264	ENSMUSG00000063972	Nr6a1	1700113M01Rik|Gcnf|NCNF|RTR	nuclear receptor subfamily 6, group A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86434554-4	chr1	86434072	86435072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	8243.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34945770-3	chr6	34945295	34946295	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001025573, exon 8 of 8)	3' UTR (NM_001025573, exon 8 of 8)	24847.0	NM_009292	20899.0	Mm.5171	NM_009292	ENSMUSG00000029848	Stra8	-	stimulated by retinoic acid gene 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-100589207-4	chr10	100588703	100589703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175128)	promoter-TSS (NM_175128)	56.0	NM_175128	68281.0	Mm.268474	NM_175128	ENSMUSG00000046567	4930430F08Rik	4930571E09Rik|A730088G13Rik|AW551239|C430008C19Rik	RIKEN cDNA 4930430F08 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62130548-4	chr15	62130051	62131051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 2 of 6)	intron (NR_132746, intron 2 of 6)	88900.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-47474477-6	chr4	47473969	47474969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019998)	promoter-TSS (NM_019998)	-102.0	NM_019998	56737.0	Mm.22218	NM_019998	ENSMUSG00000039740	Alg2	1110018A23Rik|1300013N08Rik|ALPG2|CDGIi|MNCb-5081	asparagine-linked glycosylation 2 (alpha-1,3-mannosyltransferase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33921656-4	chr16	33921169	33922169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	45369.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84207975-4	chr8	84207470	84208470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029741)	promoter-TSS (NR_029741)	-548.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	87.5	178.0	82.5	65.0	134.0	93.0
Merged-chr15-38477131-4	chr15	38476609	38477609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	13438.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93336185-3	chr10	93335683	93336683	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038014)	promoter-TSS (NR_038014)	-28.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	0.0	2.0	0.0	18.0	5.0	3.0
Merged-chr18-23754571-4	chr18	23754086	23755086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 1 of 7)	intron (NM_001162941, intron 1 of 7)	861.0	NM_001162941	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	13.0	34.0	22.5	2.5	36.5	16.0
Merged-chr17-83267699-4	chr17	83267179	83268179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52396.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8444638-4	chr15	8444128	8445128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027707)	promoter-TSS (NM_027707)	-165.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87282143-4	chr17	87281622	87282622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028639)	promoter-TSS (NM_028639)	692.0	NR_015506	74597.0	Mm.63783	NR_015506	ENSMUSG00000085287	4833418N02Rik	-	RIKEN cDNA 4833418N02 gene	ncRNA	87.0	226.0	141.0	109.5	256.0	203.0
Merged-chr11-59208304-4	chr11	59207815	59208815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024210)	promoter-TSS (NM_024210)	-46.0	NM_024210	67862.0	Mm.358708	NM_024210	ENSMUSG00000020441	2310033P09Rik	Mmtag2	RIKEN cDNA 2310033P09 gene	protein-coding	62.0	188.5	164.5	107.5	171.0	161.0
Merged-chr16-23557424-4	chr16	23556927	23557927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36612.0	NM_001359083	17174.0	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107533991-4	chr9	107533473	107534473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019704)	promoter-TSS (NM_019704)	28.0	NM_019704	56395.0	Mm.260153	NM_019704	ENSMUSG00000010045	Tmem115	C78915|Pl6|Pp6	transmembrane protein 115	protein-coding	1.5	12.0	20.0	19.0	13.0	16.0
Merged-chr12-84174475-4	chr12	84174086	84175086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	19429.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128709621-4	chr2	128709118	128710118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	10703.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	26.5	125.0	65.5	28.5	116.0	68.0
Merged-chr3-109464814-4	chr3	109464314	109465314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	-109193.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	26.0	56.5	63.0	51.5	40.5	57.5
Merged-chr5-34573687-4	chr5	34573183	34574183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331081)	promoter-TSS (NM_001331081)	19.0	NM_001331086	11518.0	Mm.289106	NM_013457	ENSMUSG00000029106	Add1	AI256389	adducin 1 (alpha)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107098236-4	chr3	107097724	107098724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3343.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55604430-1	chr14	55603930	55604930	+	1000.0	f0_balb.idr	promoter-TSS (NM_001159418)	promoter-TSS (NM_001159418)	-149.0	NM_001159418	16391.0	Mm.2032	NM_008394	ENSMUSG00000002325	Irf9	Irf-9|Isgf3g|p48	interferon regulatory factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61729394-2	chr11	61728894	61729894	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164242)	TTS (NM_001164242)	-8595.0	NM_001033227	109342.0	Mm.441070	NM_001033227	ENSMUSG00000042371	Slc5a10	C330021F16Rik|SGLT5	solute carrier family 5 (sodium/glucose cotransporter), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88553660-4	chr3	88553146	88554146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033526)	promoter-TSS (NM_033526)	-70.0	NM_033526	94232.0	Mm.303059	NM_033526	ENSMUSG00000008604	Ubqln4	A1Up|A1u|AI663987|CIP75|UBIN	ubiquilin 4	protein-coding	2.5	13.0	21.5	2.0	27.5	35.0
Merged-chr11-98682409-4	chr11	98681894	98682894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009439)	promoter-TSS (NM_009439)	-160.0	NM_009439	22123.0	Mm.12194	NM_009439	ENSMUSG00000017221	Psmd3	AI255837|AntP91a|D11Bwg1349e|Psd3|Tstap91a	proteasome (prosome, macropain) 26S subunit, non-ATPase, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-113656336-4	chr8	113655856	113656856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001048145)	TTS (NM_001048145)	13143.0	NM_001048145	668110.0	Mm.390078	NM_029139	ENSMUSG00000033409	Syce1l	4930481F22Rik|MMRP|PSESS|mmrp2	synaptonemal complex central element protein 1 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-111720517-4	chr4	111720003	111721003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026470, intron 1 of 12)	intron (NM_026470, intron 1 of 12)	493.0	NM_026470	67946.0	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding	15.0	51.0	13.5	29.0	30.5	22.5
Merged-chr4-116995348-4	chr4	116994857	116995857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009478)	promoter-TSS (NM_009478)	9.0	NM_175244	76608.0	Mm.251420	NM_175244	ENSMUSG00000046861	Hectd3	1700064K09Rik|AI467540|AW743312	HECT domain E3 ubiquitin protein ligase 3	protein-coding	5.0	14.5	5.5	3.5	7.0	16.5
Merged-chr2-130729483-4	chr2	130728967	130729967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029432, intron 28 of 36)	intron (NM_029432, intron 28 of 36)	-31948.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	14.0	25.0	19.5	29.0	41.5	39.5
Merged-chr13-41016281-4	chr13	41015763	41016763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025387)	promoter-TSS (NM_025387)	13.0	NM_001360770	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-28036992-1	chr5	28036492	28037492	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-34420.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32560222-4	chr11	32559734	32560734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	26968.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	56.0	205.0	103.0	75.0	154.0	159.0
Merged-chr11-69581532-4	chr11	69581050	69582050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127233, intron 1 of 10)	CpG	1191.0	NM_001127233	22059.0	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132607882-4	chr2	132607373	132608373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033469, intron 2 of 3)	intron (NR_033469, intron 2 of 3)	9677.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62283086-4	chr4	62282581	62283581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3348.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94012721-4	chr8	94012227	94013227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011787)	promoter-TSS (NM_011787)	-87.0	NM_011787	23802.0	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105717175-2	chr5	105716675	105717675	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	PB1D10|SINE|Alu	16365.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64377181-2	chr5	64376681	64377681	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90761.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	39.5	101.0	62.0	21.5	85.5	61.0
Merged-chr5-65137945-4	chr5	65137438	65138438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359401, intron 1 of 5)	intron (NM_001359401, intron 1 of 5)	6707.0	NM_175174	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37356762-4	chr13	37356273	37357273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	11428.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	25.5	101.0	66.5	31.0	64.0	59.0
Merged-chr17-29498257-4	chr17	29497768	29498768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7223.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-178405682-4	chr1	178405183	178406183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026626)	promoter-TSS (NM_026626)	-335.0	NM_026626	68226.0	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-142504276-1	chr6	142503776	142504776	+	1000.0	f0_balb.idr	intron (NM_008492, intron 2 of 7)	intron (NM_008492, intron 2 of 7)	3681.0	NM_008492	16832.0	Mm.9745	NM_008492	ENSMUSG00000030246	Ldhb	AI790582|H-Ldh|LDH-B|LDH-H|Ldh-2|Ldh2	lactate dehydrogenase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47740374-2	chr6	47739874	47740874	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	3857.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46339374-4	chr19	46338864	46339864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164295)	promoter-TSS (NM_001164295)	-704.0	NM_001164292	67116.0	Mm.218848	NM_024192	ENSMUSG00000036748	Cuedc2	3010002G01Rik	CUE domain containing 2	protein-coding	18.0	60.0	28.5	20.5	45.5	33.0
Merged-chr3-108086744-4	chr3	108086192	108087192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028779)	promoter-TSS (NM_028779)	-26.0	NM_001289719	109674.0	Mm.274335	NM_028779	ENSMUSG00000027889	Ampd2	1200014F01Rik|AI552571|Ampd-2|m4521Dajl	adenosine monophosphate deaminase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103099722-4	chr14	103099212	103100212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347601)	promoter-TSS (NM_001347601)	-146.0	NM_001360342	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131436343-4	chr2	131435854	131436854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-55508.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145371008-4	chr2	145370511	145371511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053195, intron 2 of 16)	intron (NM_053195, intron 2 of 16)	128400.0	NM_053195	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100626375-4	chr11	100625882	100626882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028024, exon 4 of 4)	3' UTR (NM_028024, exon 4 of 4)	3427.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	1.0	9.0	2.5	2.0	11.5	5.0
Merged-chr7-135791205-2	chr7	135790705	135791705	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74826.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78481016-4	chr9	78480496	78481496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010106, intron 1 of 7)	CpG	728.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	144.5	250.0	192.5	139.0	246.5	195.5
Merged-chr5-110110117-4	chr5	110109609	110110609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163996)	promoter-TSS (NM_001163996)	17.0	NM_001163996	675812.0	Mm.442122	NM_001163996	ENSMUSG00000023284	Zfp605	A830023I12Rik	zinc finger protein 605	protein-coding	1.0	9.5	3.5	1.0	4.0	2.0
Merged-chr10-97313782-4	chr10	97313274	97314274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109704.0	NR_039547	100628616.0		NR_039547	ENSMUSG00000105557	Mir3966	mmu-mir-3966|mu-mir-3966	microRNA 3966	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-54814811-4	chr3	54814302	54815302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5a|LINE|L1	-7011.0	NM_133231	170767.0	Mm.185735	NM_133231	ENSMUSG00000036615	Rfxap	5730495K23Rik	regulatory factor X-associated protein	protein-coding	0.0	20.0	14.0	0.0	11.5	7.0
Merged-chr17-71834791-3	chr17	71834301	71835301	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271483, intron 13 of 16)	intron (NM_001271483, intron 13 of 16)	52854.0	NM_030179	78785.0	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	5.5	35.0	22.5	57.5	114.5	131.0
Merged-chr11-67047362-4	chr11	67046863	67047863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025510, intron 2 of 4)	intron (NM_025510, intron 2 of 4)	5255.0	NM_025510	66358.0	Mm.22511	NM_025510	ENSMUSG00000020910	Adprm	2310004I24Rik|MDS006	ADP-ribose/CDP-alcohol diphosphatase, manganese dependent	protein-coding	2.0	4.5	3.5	2.0	2.5	1.0
Merged-chr7-101534266-2	chr7	101533715	101534715	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21587.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	0.0	0.0	3.5	0.0	0.0	0.0
Merged-chr2-128008936-4	chr2	128008509	128009509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028765, intron 11 of 17)	intron (NM_028765, intron 11 of 17)	-117029.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	10.0	34.5	36.0	16.5	49.0	34.0
Merged-chr8-22398499-4	chr8	22397997	22398997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045473)	promoter-TSS (NR_045473)	124.0	NM_181325	18408.0	Mm.200907	NM_181325	ENSMUSG00000031482	Slc25a15	D630044L02Rik|Ornt1	solute carrier family 25 (mitochondrial carrier ornithine transporter), member 15	protein-coding	1.0	1.5	2.5	0.5	8.0	4.5
Merged-chr8-105455463-4	chr8	105454936	105455936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033371, intron 7 of 10)	intron (NM_001033371, intron 7 of 10)	15986.0	NM_026481	67971.0	Mm.29358	NM_026481	ENSMUSG00000014846	Tppp3	2700055K07Rik|CGI-38|Ceacam9|mmCGM8	tubulin polymerization-promoting protein family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-40307908-4	chr8	40307400	40308400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106126)	promoter-TSS (NR_106126)	29.0	NR_106126	102466237.0		NR_106126	ENSMUSG00000098431	Mir7666	Gm27915|mmu-mir-7666	microRNA 7666	ncRNA	34.0	75.5	81.0	24.5	49.5	39.5
Merged-chr17-33904097-4	chr17	33903601	33904601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1034.0	NR_040470	474160.0	Mm.206186	NR_040470	ENSMUSG00000092349	Platr17	-	pluripotency associated transcript 17	ncRNA	8.5	45.5	35.0	8.5	45.5	34.5
Merged-chr5-113672643-4	chr5	113672159	113673159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22269.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35740546-4	chr17	35740041	35741041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-31909.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	40.0	85.0	57.0	30.0	58.0	48.0
Merged-chr8-47714527-2	chr8	47714027	47715027	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172407)	promoter-TSS (NM_172407)	-596.0	NM_172407	70925.0	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121951957-2	chr8	121951457	121952457	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016812, intron 1 of 13)	B1_Mur4|SINE|Alu	1465.0	NM_001285983	53325.0	Mm.287163	NM_016812	ENSMUSG00000025316	Banp	AA408158|SMAR1	BTG3 associated nuclear protein	protein-coding	0.0	0.0	1.5	1.0	0.0	0.5
Merged-chr18-40329796-3	chr18	40329313	40330313	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026135, intron 1 of 1)	L1M4c|LINE|L1	71452.0	NM_026135	383348.0	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	9.0	10.5	5.0	1.5	0.0	6.0
Merged-chr9-21962552-4	chr9	21961990	21962990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010149, intron 1 of 7)	intron (NM_010149, intron 1 of 7)	1086.0	NM_010149	13857.0	Mm.2653	NM_010149	ENSMUSG00000006235	Epor	-	erythropoietin receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23729244-6	chr13	23728743	23729743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9564.0	NM_015786	50708.0	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	164.0	361.0	358.0	156.0	490.0	385.0
Merged-chr15-38244999-4	chr15	38244467	38245467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	25764.0	NM_008757	18285.0	Mm.252830	NM_008757	ENSMUSG00000061923	Odf1	-	outer dense fiber of sperm tails 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59374125-4	chr15	59373609	59374609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026746)	promoter-TSS (NM_026746)	43.0	NM_153548	223593.0	Mm.218665	NM_153548	ENSMUSG00000022350	Washc5	AL022848|C76463|E430025E21Rik|Kiaa0196|mKIAA0196|strumpellin	WASH complex subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68968049-4	chr11	68967557	68968557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028048)	promoter-TSS (NM_028048)	-74.0	NM_028048	71998.0	Mm.298622	NM_028048	ENSMUSG00000018740	Slc25a35	1810012H11Rik	solute carrier family 25, member 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79287919-2	chr3	79287419	79288419	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57457.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	2.5	12.5	12.5	3.5	12.5	12.5
Merged-chr17-87025415-4	chr17	87024883	87025883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008838)	promoter-TSS (NM_008838)	18.0	NM_008838	18701.0	Mm.219685	NM_008838	ENSMUSG00000024145	Pigf	-	phosphatidylinositol glycan anchor biosynthesis, class F	protein-coding	44.5	173.0	126.0	57.5	195.5	126.5
Merged-chr1-58505040-4	chr1	58504531	58505531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271526)	promoter-TSS (NM_001271526)	78.0	NM_001271526	18393.0	Mm.3411	NM_008765	ENSMUSG00000026037	Orc2	AU041563|Orc2l	origin recognition complex, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32284056-4	chr17	32283553	32284553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198094)	promoter-TSS (NM_198094)	70.0	NM_198094	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83174353-4	chr15	83173839	83174839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2131.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36879877-4	chr15	36879372	36880372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-82943.0	NM_001253806	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69154907-4	chr3	69154393	69155393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126533, intron 2 of 2)	intron (NR_126533, intron 2 of 2)	23660.0	NR_126533	381452.0	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	33.5	86.5	61.5	10.5	12.0	22.0
Merged-chr10-127621148-6	chr10	127620671	127621671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008512)	promoter-TSS (NM_008512)	-23.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	45.5	111.0	73.0	23.5	81.0	60.5
Merged-chr6-87501628-2	chr6	87501128	87502128	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	-5301.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.0	6.5	13.0	3.5	12.0	12.5
Merged-chr15-10470306-4	chr15	10469812	10470812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030046, exon 1 of 12)	exon (NM_030046, exon 1 of 12)	204.0	NM_030046	78244.0	Mm.297862	NM_030046	ENSMUSG00000044224	Dnajc21	4930461P20Rik|9930116P15Rik	DnaJ heat shock protein family (Hsp40) member C21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27679001-2	chr2	27678501	27679501	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	1800.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60284334-4	chr2	60283821	60284821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001290660, exon 1 of 6)	5' UTR (NM_001290660, exon 1 of 6)	163.0	NM_025422	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62349622-4	chr4	62349140	62350140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355385, intron 2 of 27)	intron (NM_001355385, intron 2 of 27)	10956.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43523628-4	chr19	43523115	43524115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010324, intron 1 of 8)	intron (NM_010324, intron 1 of 8)	990.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	47.0	90.5	54.5	23.0	56.5	44.0
Merged-chr2-75792577-4	chr2	75792063	75793063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39614.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63080360-4	chr14	63079858	63080858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25285.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90671933-2	chr2	90671433	90672433	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5282.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120918253-2	chr7	120917753	120918753	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164096, intron 1 of 19)	CpG	509.0	NM_001164096	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91485021-5	chr2	91484560	91485560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 16 of 37)	L1_Rod|LINE|L1	27529.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	51.0	170.5	130.0	55.5	120.5	105.0
Merged-chr5-16356048-4	chr5	16355555	16356555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110843, intron 29 of 38)	intron (NM_001110843, intron 29 of 38)	-197440.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-40968786-4	chr13	40968294	40969294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155347, intron 1 of 4)	LTR41|LTR|ERVL	-32216.0	NM_026550	68083.0	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-90795525-4	chr8	90795005	90796005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33330.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	23.0	63.0	55.0	36.5	72.5	49.5
Merged-chr6-29621065-2	chr6	29620565	29621565	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11216.0	NM_001347079	320938.0	Mm.276381	NM_177296	ENSMUSG00000012535	Tnpo3	5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133	transportin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24464595-4	chr13	24464108	24465108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111110, intron 14 of 16)	RMER5|LTR|ERV1	49486.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54862917-4	chr12	54862397	54863397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007688)	promoter-TSS (NM_007688)	-20.0	NM_007688	12632.0	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	4.5	14.0	10.5	0.5	8.5	11.5
Merged-chr15-89196083-4	chr15	89195567	89196567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027081, intron 1 of 19)	CpG	407.0	NM_027081	69440.0	Mm.482128	NM_027081	ENSMUSG00000015377	Dennd6b	1700027J05Rik|AI414881|Fam116b	DENN/MADD domain containing 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34602102-4	chr19	34601599	34602599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001101605)	promoter-TSS (NM_001101605)	-131.0	NM_001101605	667373.0	Mm.371956	NM_001101605	ENSMUSG00000079339	Ifit1bl1	Gm14446|Ifit1c	interferon induced protein with tetratricpeptide repeats 1B like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63103228-4	chr14	63102729	63103729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19233.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75063641-4	chr8	75063139	75064139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136259, intron 12 of 15)	intron (NM_001136259, intron 12 of 15)	29953.0	NM_011622	21968.0	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	10.5	13.5	30.5	5.0	19.0	28.0
Merged-chr4-155235128-4	chr4	155234610	155235610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12575.0	NM_001357191	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	37.5	109.0	75.0	27.5	93.5	45.5
Merged-chr15-57890640-4	chr15	57890186	57891186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024207, intron 1 of 7)	L2a|LINE|L2	1732.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9993217-4	chr19	9992734	9993734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011913, exon 3 of 12)	exon (NM_011913, exon 3 of 12)	8399.0	NM_011913	24115.0	Mm.31577	NM_011913	ENSMUSG00000037418	Best1	Bmd|Vmd2|mBest1	bestrophin 1	protein-coding	23.0	14.5	14.0	4.0	13.0	2.0
Merged-chr16-31234208-4	chr16	31233717	31234717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER112|DNA|hAT-Charlie	-32979.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28368674-2	chr7	28368174	28369174	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138752, intron 6 of 18)	intron (NM_138752, intron 6 of 18)	3988.0	NM_138752	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135616234-4	chr5	135615753	135616753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16401.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38941203-4	chr6	38940699	38941699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	intron (NM_011539, intron 1 of 12)	22213.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88509242-4	chr5	88508733	88509733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18664.0	NM_152839	16069.0	Mm.1192	NM_152839	ENSMUSG00000067149	Jchain	9530090F24Rik|AI323815|Igj|Jch	immunoglobulin joining chain	protein-coding	8.5	8.5	3.0	8.5	8.0	3.0
Merged-chr17-64592485-4	chr17	64591979	64592979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9170.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70990608-4	chr17	70990148	70991148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023402)	promoter-TSS (NM_023402)	-132.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	90.0	304.0	227.5	149.5	279.0	238.0
Merged-chr10-67633302-4	chr10	67632806	67633806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61347.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46573256-4	chr19	46572735	46573735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019718)	promoter-TSS (NM_019718)	-53.0	NM_019718	56350.0	Mm.22085	NM_019718	ENSMUSG00000025035	Arl3	-	ADP-ribosylation factor-like 3	protein-coding	7.0	18.5	26.0	19.5	22.5	17.5
Merged-chr3-105900892-4	chr3	105900384	105901384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-3537.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123248751-4	chr8	123248234	123249234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028200, intron 5 of 14)	intron (NM_028200, intron 5 of 14)	-5461.0	NM_020497	57247.0	Mm.379084	NM_020497	ENSMUSG00000001065	Zfp276	AW048709|D8Ertd370e|D8Ertd377e|Znf276	zinc finger protein (C2H2 type) 276	protein-coding	17.5	34.5	39.0	25.5	79.5	37.0
Merged-chr13-54590139-4	chr13	54589616	54590616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025933)	promoter-TSS (NM_025933)	-42.0	NM_178605	28126.0	Mm.439993	NM_178605	ENSMUSG00000025869	Nop16	AA409471|D13Wsu177e	NOP16 nucleolar protein	protein-coding	11.5	10.0	18.5	13.0	10.5	4.5
Merged-chr11-115707439-4	chr11	115706954	115707954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008163, intron 1 of 5)	intron (NM_008163, intron 1 of 5)	1143.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23819273-2	chr17	23818773	23819773	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175229, exon 10 of 14)	exon (NM_175229, exon 10 of 14)	-4018.0	NR_039586	100628593.0		NR_039586	ENSMUSG00000092981	Mir5125	mmu-mir-5125|mu-mir-5125	microRNA 5125	ncRNA	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr16-15887891-3	chr16	15887413	15888413	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007679, exon 1 of 1)	exon (NM_007679, exon 1 of 1)	627.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166771603-5	chr2	166771082	166772082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22185.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-178407019-2	chr1	178406519	178407519	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026626, intron 1 of 6)	intron (NM_026626, intron 1 of 6)	1001.0	NM_026626	68226.0	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46336512-4	chr8	46336009	46337009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41838.0	NM_173789	234219.0	Mm.145631	NM_173789	ENSMUSG00000047171	Helt	A830086M02|Hesl|Heslike|Mgn|megane	helt bHLH transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101466194-4	chr11	101465699	101466699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012037)	promoter-TSS (NM_012037)	0.0	NM_012037	26949.0	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23803882-4	chr18	23803388	23804388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153058)	promoter-TSS (NM_153058)	-82.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	67.0	150.5	95.5	102.5	129.5	111.0
Merged-chr8-106134042-2	chr8	106133542	106134542	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176838, intron 5 of 14)	intron (NM_176838, intron 5 of 14)	-1358.0	NR_040345	69771.0	Mm.393274	NR_040344		1810019D21Rik	-	RIKEN cDNA 1810019D21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-42246035-6	chr13	42245532	42246532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55444.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-19666137-2	chr5	19665637	19666637	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 1 of 22)	intron (NM_001170746, intron 1 of 22)	-241381.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46360061-4	chr4	46359561	46360561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD2|LINE|L1	15867.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32795894-4	chr12	32795371	32796371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24464.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	28.5	63.0	43.5	34.0	50.0	53.5
Merged-chr5-32997876-4	chr5	32997344	32998344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20972.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135458486-2	chr5	135457986	135458986	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 2 of 30)	intron (NM_146001, intron 2 of 30)	-63940.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117215948-2	chr10	117215448	117216448	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_026570, intron 6 of 6)	intron (NM_026570, intron 6 of 6)	8559.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122274297-4	chr3	122273795	122274795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153806)	promoter-TSS (NM_153806)	-119.0	NM_153806	99480.0	Mm.398647	NM_153806	ENSMUSG00000039756	Dnttip2	4930588M11Rik|AA408582|AU014960|HSU15552	deoxynucleotidyltransferase, terminal, interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33922447-4	chr16	33921959	33922959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	44579.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24425827-2	chr5	24425327	24426327	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009207, intron 1 of 22)	intron (NM_009207, intron 1 of 22)	595.0	NM_009207	20535.0	Mm.4580	NM_009207	ENSMUSG00000028962	Slc4a2	Ae2|B3RP	solute carrier family 4 (anion exchanger), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4913163-4	chr16	4912655	4913655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 4 of 17)	intron (NM_001357062, intron 4 of 17)	-25956.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-36066089-4	chr3	36065616	36066616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172678, exon 1 of 18)	exon (NM_172678, exon 1 of 18)	137.0	NM_172678	229211.0	Mm.260997	NM_172678	ENSMUSG00000027710	Acad9	2600017P15Rik|4732402K02|C630012L17Rik|NPD002	acyl-Coenzyme A dehydrogenase family, member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80408783-4	chr18	80408288	80409288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 12 of 12)	intron (NM_026295, intron 12 of 12)	-44534.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	2.5	14.5	19.0	18.0	34.0	23.5
Merged-chr13-51644199-2	chr13	51643699	51644699	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1033.0	NM_025415	66197.0	Mm.222228	NM_025415	ENSMUSG00000062248	Cks2	1110038L14Rik|CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25193597-4	chr2	25193099	25194099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_146115, exon 2 of 2)	3' UTR (NM_146115, exon 2 of 2)	3214.0	NM_146115	227612.0	Mm.119747	NM_146115	ENSMUSG00000059555	Tor4a	A830007P12Rik	torsin family 4, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95828320-4	chr11	95827795	95828795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153104, intron 1 of 2)	MIRb|SINE|MIR	3795.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111009986-4	chr10	111009501	111010501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172554)	promoter-TSS (NM_172554)	8.0	NM_001359622	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	60.5	133.5	114.5	46.0	118.0	96.5
Merged-chr18-82505164-4	chr18	82504646	82505646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025245, intron 2 of 3)	intron (NM_001025245, intron 2 of 3)	30023.0	NM_010777	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113654297-4	chr6	113653780	113654780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	15813.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-58640579-4	chr6	58640129	58641129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011920, intron 1 of 15)	CpG	43957.0	NM_011920	26357.0	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116122951-2	chr4	116122451	116123451	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131048)	promoter-TSS (NR_131048)	738.0	NM_009015	19366.0	Mm.3655	NM_009015	ENSMUSG00000028702	Rad54l	RAD54	RAD54 like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180705325-4	chr2	180704827	180705827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291432, intron 1 of 5)	intron (NM_001291432, intron 1 of 5)	-3225.0	NM_175551	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126827595-2	chr8	126827095	126828095	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-21425.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12460731-3	chr19	12460225	12461225	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010821)	promoter-TSS (NM_010821)	-54.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	114.0	287.5	146.5	98.5	286.0	142.5
Merged-chr7-48882066-2	chr7	48881566	48882566	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360812)	promoter-TSS (NM_001360812)	-470.0	NM_001360812	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11636462-4	chr8	11635956	11636956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281975)	promoter-TSS (NM_001281975)	-699.0	NM_001281974	102334.0	Mm.12459	NM_133971	ENSMUSG00000031508	Ankrd10	4833425P12Rik|AW549277	ankyrin repeat domain 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-145937999-4	chr3	145937566	145938566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356284)	promoter-TSS (NM_001356284)	52.0	NR_151446	66421.0	Mm.25137	NM_025555	ENSMUSG00000036873	2410004B18Rik	4930572C24Rik	RIKEN cDNA 2410004B18 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-89442815-4	chr10	89442307	89443307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079876, intron 1 of 10)	intron (NM_001079876, intron 1 of 10)	1160.0	NM_001284344	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	52.0	204.0	119.0	73.5	213.5	126.0
Merged-chr14-37134748-4	chr14	37134245	37135245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_078478, intron 1 of 8)	intron (NM_078478, intron 1 of 8)	394.0	NM_001199122	66092.0	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24341643-4	chr2	24341127	24342127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031167, intron 1 of 4)	intron (NM_031167, intron 1 of 4)	-3664.0	NM_001159562	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95859254-3	chr11	95858774	95859774	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045187, intron 1 of 1)	CpG	457.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	58.5	139.0	80.5	66.5	91.0	77.0
Merged-chr7-30321749-4	chr7	30321275	30322275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033140, exon 1 of 1)	3' UTR (NM_001033140, exon 1 of 1)	600.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	65.5	203.5	165.0	161.5	337.5	276.0
Merged-chr12-29291164-4	chr12	29290666	29291666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	149237.0	NR_154987	102633526.0	Mm.134217	NR_154987		Gm31333	-	predicted gene, 31333	ncRNA	13.5	23.0	16.5	9.5	9.0	25.0
Merged-chr11-4637681-4	chr11	4637171	4638171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029291)	promoter-TSS (NM_029291)	-122.0	NM_029291	75452.0	Mm.439906	NM_029291	ENSMUSG00000020412	Ascc2	1700011I11Rik|2610034L15Rik|AI482016|ASC1p100|AW046480	activating signal cointegrator 1 complex subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-12230289-4	chr12	12229780	12230780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D-int|LTR|ERVL-MaLR	-31859.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	125.0	376.0	235.5	164.5	442.0	280.0
Merged-chr19-6164349-4	chr19	6163832	6164832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028967)	promoter-TSS (NM_028967)	-107.0	NM_001356604	74481.0	Mm.159219	NM_028967	ENSMUSG00000039699	Batf2	B-ATF-2	basic leucine zipper transcription factor, ATF-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-43918368-4	chr14	43917852	43918852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5016.0	NM_053112	93725.0	Mm.429087	NM_053112	ENSMUSG00000090166	Ear10	Raf2	eosinophil-associated, ribonuclease A family, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-119398417-4	chr12	119397914	119398914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44996.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80129155-2	chr12	80128655	80129655	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033514, intron 2 of 2)	intron (NR_033514, intron 2 of 2)	3689.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0.0	0.5	1.5	0.0	0.5	1.5
Merged-chr1-93478419-4	chr1	93477922	93478922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159718)	promoter-TSS (NM_001159718)	-45.0	NM_001357556	110611.0	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	27.0	25.0	32.5	8.5	26.0	13.5
Merged-chr11-116853680-2	chr11	116853188	116854188	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_011358)	promoter-TSS (NM_011358)	-74.0	NM_001361585	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	22.5	83.0	43.0	39.5	188.5	106.0
Merged-chr3-105717014-4	chr3	105716522	105717522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175398, exon 2 of 2)	exon (NM_175398, exon 2 of 2)	11564.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-46832175-4	chr1	46831681	46832681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356416, intron 4 of 10)	intron (NM_001356416, intron 4 of 10)	21437.0	NM_001356416	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-79884133-4	chr7	79883641	79884641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009682, intron 4 of 5)	L1MB2|LINE|L1	-35931.0	NM_008486	16790.0	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77540858-4	chr10	77540364	77541364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 1 of 15)	intron (NM_008404, intron 1 of 15)	10516.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-143167177-4	chr6	143166686	143167686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029250)	promoter-TSS (NM_029250)	-44.0	NM_029250	75320.0	Mm.272548	NM_029250	ENSMUSG00000030275	Etnk1	1110061E11Rik|4930555L11Rik|AI195356|AI841245|C80956|D6Ertd3e|EKI1	ethanolamine kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75845207-4	chr14	75844728	75845728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045294)	promoter-TSS (NR_045294)	-28.0	NM_009429	22070.0	Mm.297482	NM_009429	ENSMUSG00000060126	Tpt1	TCTP|Trt|p21|p23	tumor protein, translationally-controlled 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8926955-2	chr12	8926455	8927455	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008640, intron 1 of 6)	L1MA6|LINE|L1	5648.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-34769174-4	chr14	34768682	34769682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50954.0	NM_008166	14803.0	Mm.121569	NM_008166	ENSMUSG00000041078	Grid1	GluD1|GluRdelta1	glutamate receptor, ionotropic, delta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114922507-1	chr5	114922007	114923007	+	1000.0	f1_balb.idr	promoter-TSS (NM_145209)	promoter-TSS (NM_145209)	-733.0	NM_001359946	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	86.0	169.5	110.0	81.5	186.5	175.0
Merged-chr4-127250138-4	chr4	127249623	127250623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6339.0	NM_030252	80284.0	Mm.139607	NM_030252	ENSMUSG00000042380	Smim12	BC003266	small integral membrane protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45320471-4	chr4	45319956	45320956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025513, exon 1 of 4)	exon (NM_025513, exon 1 of 4)	147.0	NM_025513	66362.0	Mm.275788	NM_025513	ENSMUSG00000028322	Exosc3	2310005D06Rik|AI593501|Rrp40	exosome component 3	protein-coding	25.5	100.0	65.0	42.0	64.0	72.0
Merged-chr11-107451260-4	chr11	107450733	107451733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	19487.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46597670-4	chr18	46597194	46598194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010120)	promoter-TSS (NM_010120)	-10.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121745691-4	chr11	121745154	121746154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43227.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-7824211-3	chr1	7823714	7824714	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	735294.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.0	3.0	0.0	0.0	0.0	1.0
Merged-chr8-26169328-4	chr8	26168825	26169825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11156.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35334479-2	chr7	35333979	35334979	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027897, intron 1 of 14)	CpG	242.0	NM_027897	52428.0	Mm.286600	NM_027897	ENSMUSG00000030494	Rhpn2	1300002E07Rik|AA536890|C85860|D7Ertd784e	rhophilin, Rho GTPase binding protein 2	protein-coding	0.0	3.0	2.0	0.0	7.0	7.0
Merged-chr10-21847201-4	chr10	21846725	21847725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34959.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	15.0	55.0	48.5	21.5	34.0	53.5
Merged-chr9-32517489-2	chr9	32516989	32517989	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	23963.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4685131-4	chr7	4684620	4685620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360629)	promoter-TSS (NM_001360629)	-139.0	NM_024172	66245.0	Mm.6803	NM_024172	ENSMUSG00000063802	Hspbp1	1500019G21Rik	HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123412094-4	chr4	123411600	123412600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167918)	promoter-TSS (NM_001167918)	-189.0	NM_001167918	442834.0	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-70568245-4	chr18	70567769	70568769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311071)	promoter-TSS (NM_001311071)	-23.0	NM_001311071	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-55545733-2	chr9	55545233	55546233	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027397, exon 6 of 6)	3' UTR (NM_027397, exon 6 of 6)	4584.0	NM_027397	104360.0	Mm.273996	NM_027397	ENSMUSG00000032318	Isl2	3110001N10Rik	insulin related protein 2 (islet 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-99490050-4	chr6	99489550	99490550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347345, intron 1 of 19)	intron (NM_001347345, intron 1 of 19)	30943.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-127077471-4	chr4	127076970	127077970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285885)	promoter-TSS (NM_001285885)	87.0	NM_001285887	100177.0	Mm.276096	NM_177462	ENSMUSG00000042408	Zmym6	9330177P20Rik|AI593204|AI661340|D4Wsu24e|Zfp258	zinc finger, MYM-type 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117860534-4	chr10	117860042	117861042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14568.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24937044-4	chr17	24936512	24937512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163447)	promoter-TSS (NM_001163447)	-35.0	NM_013931	30957.0	Mm.43081	NM_013931	ENSMUSG00000024163	Mapk8ip3	BB120594|D17Wsu15e|JIP-3|JSAP1|JSAP1a|JSAP1b|JSAP1c|JSAP1d|Jip3|Syd2|mKIAA1066	mitogen-activated protein kinase 8 interacting protein 3	protein-coding	106.5	198.0	156.0	64.5	105.0	141.5
Merged-chr7-132388476-2	chr7	132387976	132388976	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71248.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-28990388-4	chr19	28989887	28990887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302443)	promoter-TSS (NM_001302443)	35.0	NM_025950	67072.0	Mm.78875	NM_025950	ENSMUSG00000024780	Cdc37l1	2700033A15Rik|BB159850|Cdc37l|Harc	cell division cycle 37-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-94045341-3	chr6	94044846	94045846	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029850, intron 1 of 23)	RMER15|LTR|ERVL	-131656.0	NM_001083320	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-111178734-4	chr5	111178235	111179235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 5 of 22)	ORR1E|LTR|ERVL-MaLR	-151962.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	12.0	14.0	21.0	8.0	12.5	19.0
Merged-chr13-81110353-4	chr13	81109842	81110842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	146268.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-6889631-4	chr13	6889160	6890160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-240889.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-133776784-4	chr7	133776292	133777292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025850)	promoter-TSS (NM_025850)	11.0	NM_001286032	101437.0	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32|muDDX32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92864304-4	chr16	92863807	92864807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38233.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-138531750-4	chr3	138531252	138532252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007917, intron 2 of 7)	intron (NM_007917, intron 2 of 7)	4484.0	NM_001313980	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	17.0	38.0	30.0	15.5	16.5	13.0
Merged-chr8-84198563-4	chr8	84198065	84199065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9953.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	18.5	106.5	26.0	17.5	35.0	32.0
Merged-chr9-40701890-3	chr9	40701386	40702386	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	RLTR12D|LTR|ERVK	15922.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	3.0	0.0	0.5	9.5	66.0	34.5
Merged-chr17-94834311-2	chr17	94833811	94834811	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045964, intron 1 of 3)	intron (NR_045964, intron 1 of 3)	488.0	NR_045964	100038746.0	Mm.456686	NR_045963	ENSMUSG00000066057	Gm1976	100038868	predicted gene 1976	ncRNA	1.5	2.0	4.0	0.0	7.0	2.5
Merged-chr12-83949956-4	chr12	83949461	83950461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023633)	promoter-TSS (NM_023633)	-647.0	NM_023633	71952.0	Mm.251483	NM_023633	ENSMUSG00000046791	Riox1	2410016O06Rik|MAPJD|NO66	ribosomal oxygenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10989593-2	chr16	10989093	10990093	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	3528.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3500466-4	chr8	3499973	3500973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053177)	promoter-TSS (NM_053177)	-46.0	NM_053177	94178.0	Mm.8356	NM_053177	ENSMUSG00000004567	Mcoln1	2210015I05Rik|TRPML1|mucolipidin	mucolipin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98290661-4	chr12	98290182	98291182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	22047.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160268099-4	chr2	160267597	160268597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59397.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-109690891-4	chr5	109690410	109691410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-131917.0	NM_001310694	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	1.5	5.0	6.0	0.0	6.5	12.5
Merged-chr1-131096995-4	chr1	131096492	131097492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	CpG	851.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	214.0	509.0	400.0	225.0	435.5	314.5
Merged-chr16-15890130-4	chr16	15889629	15890629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007679)	TTS (NM_007679)	2843.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52378605-4	chr2	52378101	52379101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-39803.0	NM_010889	17996.0	Mm.389247	NM_010889	ENSMUSG00000026950	Neb	AI595938	nebulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-57116785-4	chr2	57116289	57117289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139509, intron 1 of 7)	CpG	-1751.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75834776-2	chr14	75834271	75835271	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	10193.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-34082749-4	chr15	34082249	34083249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026002)	promoter-TSS (NM_026002)	30.0	NM_001357925	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	55.0	155.5	105.5	71.5	157.0	127.5
Merged-chr4-59783433-3	chr4	59782936	59783936	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013577, intron 1 of 4)	CpG	419.0	NM_001013577	66209.0	Mm.51988	NM_001013577	ENSMUSG00000038544	Inip	1110054O05Rik|2610312O17Rik|AA399876|Ssbip1	INTS3 and NABP interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-24756590-4	chr6	24756095	24757095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029848, exon 3 of 5)	exon (NM_029848, exon 3 of 5)	8228.0	NM_029848	77042.0	Mm.66017	NM_029848	ENSMUSG00000029680	Hyal4	4632428M18Rik|CSHY	hyaluronoglucosaminidase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87700068-4	chr16	87699560	87700560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	1106.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154935192-4	chr4	154934711	154935711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7134.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	16.0	22.0	19.0	9.5	11.5	13.0
Merged-chr17-33358870-4	chr17	33358360	33359360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207541)	promoter-TSS (NM_207541)	18.0	NM_207541	224694.0	Mm.170029	NM_207541	ENSMUSG00000003929	Zfp81	AA409460|AA409461|C330034P10Rik|D330034E10Rik|Hszfp36|KRAB13|Zfp78	zinc finger protein 81	protein-coding	26.0	39.0	19.5	26.0	35.0	21.0
Merged-chr13-24797794-4	chr13	24797284	24798284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-3873.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28702923-4	chr7	28702429	28703429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9785.0	NM_001163702	233040.0	Mm.116116	NM_207238	ENSMUSG00000037463	Fbxo27	E130008B10Rik|FBG5|Gm161	F-box protein 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26533994-4	chr17	26533482	26534482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25510.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	145.5	310.5	174.5	105.0	201.5	155.5
Merged-chr7-44344842-4	chr7	44344357	44345357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034115, intron 21 of 24)	intron (NM_001034115, intron 21 of 24)	30173.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112398313-4	chr13	112397814	112398814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65756.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24626337-4	chr16	24625826	24626826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-95529.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-48466901-1	chr6	48466401	48467401	+	1000.0	f1_balb.idr	intron (NM_173428, intron 40 of 102)	intron (NM_173428, intron 40 of 102)	18672.0	NM_173428	243369.0	Mm.25039	NM_173428	ENSMUSG00000029797	Sspo	C79529|Scospondin	SCO-spondin	protein-coding	0.0	0.0	0.0	1.5	0.0	0.0
Merged-chr12-8498781-4	chr12	8498211	8499211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007483, exon 1 of 1)	3' UTR (NM_007483, exon 1 of 1)	1298.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141790808-4	chr4	141790324	141791324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172338)	promoter-TSS (NM_172338)	-180.0	NM_172338	214063.0	Mm.39102	NM_172338	ENSMUSG00000040697	Dnajc16	2900037O03Rik|4732437J24Rik|D030060M24|mKIAA0962	DnaJ heat shock protein family (Hsp40) member C16	protein-coding	118.5	230.5	176.5	84.0	216.0	139.0
Merged-chr15-86167990-4	chr15	86167492	86168492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-17736.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30957511-4	chr7	30956984	30957984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011680)	promoter-TSS (NM_011680)	-681.0	NM_011680	22282.0	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145270331-4	chr4	145269799	145270799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009401, intron 12 of 12)	intron (NM_009401, intron 12 of 12)	-23429.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80785791-2	chr15	80785291	80786291	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144812, intron 4 of 24)	intron (NM_144812, intron 4 of 24)	-12819.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81101491-4	chr15	81100971	81101971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	3576.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	257.0	410.5	249.0	152.0	418.5	255.0
Merged-chr16-50736936-4	chr16	50736435	50737435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4162.0	NR_028300	68190.0	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170324312-4	chr2	170323864	170324864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31997.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46140503-4	chr8	46139998	46140998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16352.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80900369-4	chr10	80899903	80900903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010722)	TTS (NM_010722)	566.0	NM_013895	30055.0	Mm.142132	NM_013895	ENSMUSG00000020219	Timm13	D10Ertd378e|Tim9|Timm9	translocase of inner mitochondrial membrane 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27826422-4	chr17	27825930	27826930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5888.0	NM_001271511	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	0.5	13.0	13.5	0.5	3.0	4.5
Merged-chr12-54921157-2	chr12	54920657	54921657	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013815, intron 15 of 26)	intron (NM_013815, intron 15 of 26)	-58280.0	NM_007688	12632.0	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81124559-2	chr10	81124059	81125059	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347144, exon 11 of 11)	3' UTR (NM_001347144, exon 11 of 11)	-11712.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99241522-2	chr5	99241022	99242022	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145839, exon 3 of 14)	exon (NM_145839, exon 3 of 14)	11405.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-56797746-4	chr6	56797254	56798254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145958)	promoter-TSS (NM_145958)	59.0	NM_001362210	210973.0	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34927076-2	chr18	34926576	34927576	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144866, intron 2 of 10)	intron (NM_144866, intron 2 of 10)	4927.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-135937550-4	chr6	135937091	135938091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008171, intron 4 of 14)	MIRb|SINE|MIR	235920.0	NM_008171	14812.0	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	37.5	66.0	61.5	23.5	67.0	28.0
Merged-chr5-104459883-2	chr5	104459383	104460383	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008861, exon 1 of 15)	exon (NM_008861, exon 1 of 15)	426.0	NM_008861	18764.0	Mm.6442	NM_008861	ENSMUSG00000034462	Pkd2	C030034P18Rik|PC2|TRPP2	polycystic kidney disease 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89997991-2	chr3	89997491	89998491	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045749)	promoter-TSS (NR_045749)	112.0	NM_001310681	23897.0	Mm.256035	NM_011826	ENSMUSG00000027944	Hax1	HAX-1|HSP1BP-1|Hs1bp1|SIG-111|Silg111|mHAX-1s	HCLS1 associated X-1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32804923-4	chr19	32804429	32805429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 5 of 8)	intron (NM_008960, intron 5 of 8)	47352.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	1.0	6.5	0.5	8.0	6.5	6.5
Merged-chr2-60902725-4	chr2	60902237	60903237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-21299.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4060551-2	chr19	4060051	4061051	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1104.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35028820-4	chr7	35028315	35029315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 11 of 14)	intron (NM_008820, intron 11 of 14)	27751.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-81751323-4	chr12	81750826	81751826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001174107, intron 2 of 10)	ID_B1|SINE|B4	29844.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4567183-4	chr2	4566667	4567667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 2 of 11)	intron (NM_001177844, intron 2 of 11)	7413.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-114201322-5	chr2	114200722	114201722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175466, intron 1 of 1)	CpG	210.0	NM_175466	228491.0	Mm.132523	NM_175466	ENSMUSG00000040321	Zfp770	6430601A21Rik|Znf770	zinc finger protein 770	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38710110-2	chr6	38709610	38710610	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 12 of 14)	intron (NM_010433, intron 12 of 14)	47041.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106339040-4	chr8	106338530	106339530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-1042.0	NM_021491	58994.0	Mm.23298	NM_021491	ENSMUSG00000031906	Smpd3	4631433G07Rik|AI427456|AW537966|fro|nSMase2	sphingomyelin phosphodiesterase 3, neutral	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35756695-4	chr2	35756190	35757190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029774, intron 9 of 9)	intron (NM_029774, intron 9 of 9)	59958.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-136485939-3	chr2	136485445	136486445	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46376.0	NM_175667	319196.0	Mm.477841	NM_175667	ENSMUSG00000074771	Ankef1	AV276460|Ankrd5	ankyrin repeat and EF-hand domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21609781-4	chr10	21609229	21610229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027968, intron 2 of 2)	intron (NR_027968, intron 2 of 2)	16584.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-85340488-4	chr9	85339967	85340967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13317.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	53.5	100.0	64.0	49.5	83.5	99.0
Merged-chr5-99379751-4	chr5	99379245	99380245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-126818.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150675125-4	chr2	150674634	150675634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6894.0	NM_080575	68738.0	Mm.7044	NM_080575	ENSMUSG00000027452	Acss1	1110032O15Rik|AI788978|Acas2|Acas2l|AceCS2	acyl-CoA synthetase short-chain family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24208066-4	chr7	24207523	24208523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019940, intron 1 of 3)	intron (NM_019940, intron 1 of 3)	126.0	NM_019940	56707.0	Mm.448367	NM_019940	ENSMUSG00000087598	Zfp111	-	zinc finger protein 111	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30231882-4	chr7	30231398	30232398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027259)	promoter-TSS (NM_027259)	-176.0	NM_027259	69920.0	Mm.440028	NM_027259	ENSMUSG00000019738	Polr2i	2810002B19Rik	polymerase (RNA) II (DNA directed) polypeptide I	protein-coding	14.5	69.5	30.0	18.5	84.5	52.5
Merged-chr3-95282474-4	chr3	95281967	95282967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199475)	promoter-TSS (NM_199475)	-391.0	NM_173347	229589.0	Mm.14155	NM_173347	ENSMUSG00000015711	Prune1	9230112O05Rik|C130058A12|DRES-17|HTCD37|PRUNEM1|Prune|Prune-M1	prune exopolyphosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141605479-1	chr4	141604979	141605979	+	1000.0	f1_c57bl6.idr	intron (NM_133754, intron 1 of 8)	intron (NM_133754, intron 1 of 8)	573.0	NM_133754	74202.0	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	132.0	279.5	239.0	3.0	13.0	15.5
Merged-chr16-55631796-4	chr16	55631293	55632293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137062.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-46180891-4	chr13	46180398	46181398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92823.0	NM_001005422	380842.0	Mm.188108	NM_001005422	ENSMUSG00000063529	Stmnd1	Gm1574	stathmin domain containing 1	protein-coding	5.0	8.0	8.5	6.0	6.5	2.0
Merged-chr14-70767698-4	chr14	70767193	70768193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR67B|LTR|ERVL	-1065.0	NM_023045	65246.0	Mm.152987	NM_023045	ENSMUSG00000022100	Xpo7	4930506C02Rik|BB164534|Ranbp16|exp7	exportin 7	protein-coding	46.5	149.5	118.5	44.5	91.0	72.5
Merged-chr9-99090673-4	chr9	99090195	99091195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 6 of 23)	RSINE1|SINE|B4	49516.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23764808-2	chr13	23764319	23765319	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_030609)	TTS (NM_030609)	1151.0	NM_030609	80838.0	Mm.480242	NM_030609	ENSMUSG00000049539	Hist1h1a	H1.1|H1a|H1f1|H1var3	histone cluster 1, H1a	protein-coding	10.0	23.5	11.5	6.5	18.5	4.0
Merged-chr4-134245587-4	chr4	134245066	134246066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024215)	promoter-TSS (NM_024215)	25.0	NM_024215	68040.0	Mm.300404	NM_024215	ENSMUSG00000028840	Zfp593	3110024A21Rik|AV062409|E130106C14Rik|ZNF593	zinc finger protein 593	protein-coding	12.0	44.0	19.0	2.0	21.5	18.0
Merged-chr15-19857449-3	chr15	19856962	19857962	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	672089.0	NR_155419	102639102.0	Mm.463245	NR_155419	ENSMUSG00000115803	Gm35496	-	predicted gene, 35496	ncRNA	32.5	116.0	72.5	2.5	8.5	4.5
Merged-chr2-29628046-2	chr2	29627546	29628546	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	8326.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33810440-4	chr17	33809951	33810951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357162)	promoter-TSS (NM_001357162)	-72.0	NM_001357162	80880.0	Mm.196330	NM_030697	ENSMUSG00000042099	Kank3	0610013D04Rik|Ankrd47|D17Ertd288e|NG28	KN motif and ankyrin repeat domains 3	protein-coding	1.0	7.5	7.5	1.5	2.0	9.0
Merged-chr13-47226077-4	chr13	47225597	47226597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 3 of 7)	MER54A|LTR|ERVL	32094.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	60.5	147.0	73.5	36.0	171.0	84.5
Merged-chr6-28293378-2	chr6	28292878	28293878	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31777.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-98329377-4	chr5	98328845	98329845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024614)	promoter-TSS (NM_001024614)	41.0	NM_001024614	75784.0	Mm.443240	NM_001024614	ENSMUSG00000057816	1700007G11Rik	4930428O21Rik	RIKEN cDNA 1700007G11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-92065476-4	chr2	92065003	92066003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41333.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55154690-4	chr11	55154159	55155159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2953.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26716345-4	chr17	26715863	26716863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029870, intron 1 of 8)	CpG	713.0	NM_029870	77128.0	Mm.275414	NM_029870	ENSMUSG00000048249	Crebrf	A930001N09Rik|LRF	CREB3 regulatory factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119300119-4	chr11	119299610	119300610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138669)	promoter-TSS (NM_138669)	-67.0	NM_138669	192170.0	Mm.197555	NM_138669	ENSMUSG00000025580	Eif4a3	2400003O03Rik|Ddx48|eIF4A-III|mKIAA0111	eukaryotic translation initiation factor 4A3	protein-coding	70.0	193.0	139.0	88.5	184.0	148.5
Merged-chr1-184883019-2	chr1	184882519	184883519	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178692)	promoter-TSS (NM_178692)	17.0	NM_178692	226777.0	Mm.169542	NM_178692	ENSMUSG00000039349	C130074G19Rik	-	RIKEN cDNA C130074G19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-30391004-4	chr6	30390489	30391489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311086)	promoter-TSS (NM_001311086)	31.0	NM_172735	232679.0	Mm.29780	NM_172735	ENSMUSG00000039130	Zc3hc1	1110054L24Rik|AU018540|AU019789|HSPC216|Nipa	zinc finger, C3HC type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-76648183-4	chr2	76647689	76648689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011871)	promoter-TSS (NM_011871)	-195.0	NM_011871	23992.0	Mm.277250	NM_011871	ENSMUSG00000002731	Prkra	AV120107|PRK|Pact|RAX|lear	protein kinase, interferon inducible double stranded RNA dependent activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11497546-4	chr8	11497049	11498049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026995)	promoter-TSS (NM_026995)	-19.0	NM_026995	69225.0	Mm.64911	NM_026995	ENSMUSG00000031505	Naxd	0710008K08Rik|2810407E01Rik|Carkd	NAD(P)HX dehydratase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-94443301-4	chr3	94442763	94443763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030116)	promoter-TSS (NM_030116)	-73.0	NM_030116	78523.0	Mm.218515	NM_030116	ENSMUSG00000028140	Mrpl9	8030480E20Rik|AA409733|C330013D18Rik|L9mt	mitochondrial ribosomal protein L9	protein-coding	0.0	0.0	1.0	0.0	6.5	2.0
Merged-chr16-87689439-4	chr16	87688922	87689922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9532.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86772847-4	chr6	86772352	86773352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013471, intron 1 of 12)	intron (NM_013471, intron 1 of 12)	2262.0	NM_001331120	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	41.5	76.0	58.5	61.5	70.5	57.5
Merged-chr11-115187903-4	chr11	115187412	115188412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025400)	promoter-TSS (NM_025400)	425.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	92.5	258.5	213.0	135.5	293.5	194.5
Merged-chr3-50406951-4	chr3	50406448	50407448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011990, intron 6 of 11)	intron (NM_011990, intron 6 of 11)	36665.0	NM_011990	26570.0	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	22.0	4.0	10.5	0.0	18.0	20.0
Merged-chr2-167260607-4	chr2	167260106	167261106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20069.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141480995-4	chr7	141480491	141481491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252588, intron 1 of 7)	intron (NM_001252588, intron 1 of 7)	4611.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-106709773-4	chr5	106709269	106710269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12939.0	NM_026856	52397.0	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	0.0	7.5	7.5	0.0	15.0	4.5
Merged-chr12-111678061-4	chr12	111677564	111678564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001099792)	promoter-TSS (NM_001099792)	-41.0	NM_001099792	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70477413-2	chr12	70476913	70477913	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_037248, intron 2 of 4)	AT_rich|Low_complexity|Low_complexity	24259.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69516710-4	chr12	69516214	69517214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41164.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	17.5	47.5	12.0	23.5	14.0	14.0
Merged-chr9-78587567-4	chr9	78587048	78588048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172773, intron 1 of 10)	intron (NM_172773, intron 1 of 10)	497.0	NM_172773	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87405225-2	chr11	87404725	87405725	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053269)	promoter-TSS (NM_053269)	160.0	NM_031386	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	7.5	42.0	17.5	27.5	40.0	12.0
Merged-chr12-113146256-4	chr12	113145762	113146762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347443)	TTS (NM_001347443)	5657.0	NM_001347443	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	11.0	15.0	5.5	1.0	18.0	7.0
Merged-chr6-83502850-4	chr6	83502368	83503368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149734, intron 1 of 6)	intron (NR_149734, intron 1 of 6)	4101.0	NM_013764	27369.0	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	157.5	222.0	211.5	117.0	245.0	200.0
Merged-chr18-60804968-4	chr18	60804478	60805478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042605, intron 1 of 8)	intron (NM_001042605, intron 1 of 8)	1129.0	NM_010545	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	231.0	676.0	334.0	121.0	386.5	234.5
Merged-chr9-118747960-3	chr9	118747456	118748456	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	36264.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	1.0	10.5	12.5	5.5	18.0	8.0
Merged-chr3-90293031-4	chr3	90292518	90293518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22869.0	NR_105979	102465612.0		NR_105979	ENSMUSG00000099199	Mir7012	Gm27370|mmu-mir-7012	microRNA 7012	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43000581-4	chr4	43000065	43001065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009503)	promoter-TSS (NM_009503)	-58.0	NM_009503	269523.0	Mm.245976	NM_009503	ENSMUSG00000028452	Vcp	3110001E05|CDC48|p97|p97/VCP	valosin containing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34313466-4	chr7	34312959	34313959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-27850.0	NM_172741	233103.0	Mm.491097	NM_172741	ENSMUSG00000066571	4931406P16Rik	AA553327|mKIAA0355	RIKEN cDNA 4931406P16 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-89454708-4	chr1	89454218	89455218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178119)	promoter-TSS (NM_178119)	-93.0	NM_178119	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-82949756-4	chr13	82949257	82950257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-251424.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	25.5	14.0	15.0	21.5	19.0	19.5
Merged-chr1-16216779-4	chr1	16216281	16217281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110899.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30563275-4	chr7	30562779	30563779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170760)	promoter-TSS (NM_170760)	-61.0	NM_170760	233073.0	Mm.34790	NM_170760	ENSMUSG00000078765	U2af1l4	AA407033|AF419339|AI451269|AW553050|U2af26	U2 small nuclear RNA auxiliary factor 1-like 4	protein-coding	6.0	10.5	9.0	3.0	22.0	5.5
Merged-chr9-107599047-2	chr9	107598547	107599547	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_111986, exon 18 of 18)	non-coding (NR_111986, exon 18 of 18)	6355.0	NM_009153	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0.0	0.0	0.0	1.5	4.0	0.5
Merged-chr10-99268461-1	chr10	99267961	99268961	+	1000.0	f0_balb.idr	TTS (NM_026268)	TTS (NM_026268)	5230.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152226824-4	chr2	152226313	152227313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007788)	promoter-TSS (NM_007788)	-27.0	NM_007788	12995.0	Mm.23692	NM_007788	ENSMUSG00000074698	Csnk2a1	CK2|Csnk2a1-rs4	casein kinase 2, alpha 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25206130-4	chr12	25205602	25206602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	76928.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.0	11.5	7.0	3.5	13.0	7.0
Merged-chr10-89443333-4	chr10	89442853	89443853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079876, intron 1 of 10)	intron (NM_001079876, intron 1 of 10)	614.0	NM_001284344	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	141.5	412.0	274.0	229.0	392.5	280.5
Merged-chr11-53772724-4	chr11	53772229	53773229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159393, intron 2 of 9)	intron (NM_001159393, intron 2 of 9)	2256.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-121120347-4	chr7	121119853	121120853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139310, intron 12 of 28)	intron (NM_139310, intron 12 of 28)	36915.0	NM_139310	246190.0	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11188469-4	chr2	11187974	11188974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	C-rich|Low_complexity|Low_complexity	16092.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99194831-4	chr10	99194325	99195325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 12 of 12)	intron (NR_153333, intron 12 of 12)	-68406.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63840634-4	chr4	63840151	63841151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009403, intron 2 of 3)	intron (NM_009403, intron 2 of 3)	20633.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20535385-4	chr16	20534885	20535885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009679)	promoter-TSS (NM_009679)	-95.0	NM_001302970	11773.0	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4964364-4	chr16	4963869	4964869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271586)	promoter-TSS (NM_001271586)	81.0	NM_001271586	74684.0	Mm.374835	NM_001271586	ENSMUSG00000022543	4930451G09Rik	-	RIKEN cDNA 4930451G09 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-53570557-4	chr17	53570058	53571058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151733, intron 1 of 16)	intron (NR_151733, intron 1 of 16)	3587.0	NR_151733	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	8.5	18.0	8.0	8.5	17.0	8.0
Merged-chr5-123620962-4	chr5	123620462	123621462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359224, intron 12 of 18)	MTA_Mm|LTR|ERVL-MaLR	-47947.0	NM_029929	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	10.5	25.5	20.0	1.0	8.0	2.5
Merged-chr4-59808637-4	chr4	59808120	59809120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	B3A|SINE|B2	2970.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84662393-4	chr8	84661883	84662883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010499, exon 1 of 1)	exon (NM_010499, exon 1 of 1)	469.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	158.5	386.5	304.0	206.5	328.5	272.5
Merged-chr1-37474831-4	chr1	37474339	37475339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 5 of 15)	intron (NM_173870, intron 5 of 15)	13766.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44546413-4	chr11	44545930	44546930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 4 of 5)	intron (NM_001166553, intron 4 of 5)	27053.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	12.0	39.5	19.5	12.5	28.5	28.0
Merged-chr12-83929370-4	chr12	83928866	83929866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7432.0	NR_073564	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80773192-2	chr7	80772692	80773692	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	30139.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	6.5	20.0	12.5	2.5	6.0	14.0
Merged-chr2-45116781-1	chr2	45116281	45117281	+	1000.0	f0_c57.idr	intron (NM_001355288, intron 1 of 10)	intron (NM_001355288, intron 1 of 10)	661.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-103282458-3	chr4	103281956	103282956	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163494, intron 1 of 7)	RLTR22_Mur|LTR|ERVK	8407.0	NM_027612	70941.0	Mm.158501	NM_027612	ENSMUSG00000028520	4921539E11Rik	-	RIKEN cDNA 4921539E11 gene	protein-coding	2.5	11.0	5.5	26.0	53.0	58.0
Merged-chr3-116858520-6	chr3	116858022	116859022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1045.0	NM_001113478	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101292179-4	chr4	101291699	101292699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-26917.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88589192-4	chr1	88588717	88589717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	37700.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64690189-3	chr1	64689683	64690683	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038009, intron 1 of 1)	intron (NR_038009, intron 1 of 1)	476.0	NR_038009	69941.0	Mm.69044	NR_038009	ENSMUSG00000087213	2810408I11Rik	-	RIKEN cDNA 2810408I11 gene	ncRNA	0.0	1.5	0.0	3.0	0.5	1.5
Merged-chr3-89394211-2	chr3	89393722	89394722	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NR_040404)	promoter-TSS (NR_040404)	-68.0	NR_040404	545539.0	Mm.393389	NR_040403	ENSMUSG00000074466	Gm15417	-	predicted gene 15417	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59339159-2	chr2	59338659	59339659	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026361, exon 15 of 22)	exon (NM_026361, exon 15 of 22)	47523.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45872822-4	chr7	45872319	45873319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133950)	promoter-TSS (NM_133950)	-21.0	NM_133950	68137.0	Mm.298433	NM_133950	ENSMUSG00000002778	Kdelr1	8030486F04Rik|AW215843|Erd2.1	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1	protein-coding	12.0	18.0	16.5	11.0	37.0	29.5
Merged-chr9-61706167-1	chr9	61705667	61706667	+	1000.0	f0_balb.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	208343.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-37761129-2	chr3	37760629	37761629	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36769.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27954797-3	chr17	27954311	27955311	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	45505.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	8.0	17.0	11.5	17.5	20.0	12.5
Merged-chr17-32320819-4	chr17	32320298	32321298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_017476)	TTS (NM_017476)	440.0	NM_001357760	56399.0	Mm.328945	NM_019774	ENSMUSG00000024045	Akap8	1200016A02Rik|AA673585|AKAP-8|AKAP95|AU015639	A kinase (PRKA) anchor protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58552161-4	chr13	58551658	58552658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58719.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88641147-4	chr4	88640651	88641651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3308.0	NM_177347	230396.0	Mm.246592	NM_177347	ENSMUSG00000063376	Ifna13	-	interferon alpha 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78015631-4	chr10	78015143	78016143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5836.0	NM_001358793	18641.0	Mm.269649	NM_008826	ENSMUSG00000020277	Pfkl	AA407869|ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver, B-type	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-101281-1	chr1	100781	101781	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	3570217.0	NM_001011874	497097.0	Mm.454496	NM_001011874	ENSMUSG00000051951	Xkr4	AY534250|Gm210|XRG4|mKIAA1889	X-linked Kx blood group related 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108507963-4	chr9	108507480	108508480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133794)	promoter-TSS (NM_133794)	-25.0	NM_133794	97541.0	Mm.272427	NM_133794	ENSMUSG00000032604	Qars	1110018N24Rik|1200016L19Rik|C80286|GLNRS	glutaminyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4382478-2	chr11	4381978	4382978	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029458, intron 10 of 10)	intron (NM_029458, intron 10 of 10)	58604.0	NM_029458	75828.0	Mm.159592	NM_029458	ENSMUSG00000020419	Hormad2	4930529M09Rik	HORMA domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99723940-4	chr15	99723446	99724446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010271, exon 8 of 8)	3' UTR (NM_010271, exon 8 of 8)	528.0	NR_155353	102638434.0	Mm.364438	NR_155353		Gm16537	-	predicted gene 16537	ncRNA	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr3-60516434-4	chr3	60515938	60516938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	15259.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	18.5	47.0	32.5	21.0	33.5	24.0
Merged-chr5-122779740-4	chr5	122779235	122780235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145358)	promoter-TSS (NM_145358)	-325.0	NM_145358	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-16302897-4	chr16	16302414	16303414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038046)	promoter-TSS (NR_038046)	-51.0	NR_038046	70120.0	Mm.37486	NM_198246	ENSMUSG00000022792	Yars2	2210023C10Rik|tyrRS	tyrosyl-tRNA synthetase 2 (mitochondrial)	protein-coding	2.5	29.5	26.0	3.0	25.5	23.5
Merged-chr15-6386705-4	chr15	6386203	6387203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023118)	promoter-TSS (NM_023118)	-45.0	NM_023118	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6291324-4	chr19	6290854	6291854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	14458.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59889913-3	chr13	59889442	59890442	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66795.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	7.5	0.0	0.0	0.0	0.0	0.5
Merged-chr12-80115473-8	chr12	80115028	80116028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2515.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	51.5	84.5	87.5	57.5	110.5	75.0
Merged-chr7-30234654-1	chr7	30234154	30235154	+	1000.0	f1_balb.idr	intron (NM_001289817, intron 2 of 3)	intron (NM_001289817, intron 2 of 3)	2111.0	NM_001289817	381867.0	Mm.483986	NM_001289817	ENSMUSG00000100512	Ovol3	Gm1903|movo3	ovo like zinc finger 3	protein-coding	2.0	0.0	2.5	2.0	4.5	0.5
Merged-chr1-75524680-2	chr1	75524180	75525180	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027886, intron 2 of 24)	intron (NM_027886, intron 2 of 24)	3151.0	NM_027886	71728.0	Mm.312650	NM_027886	ENSMUSG00000026213	Stk11ip	1200014D22Rik|BB131189|LIP1|LKB1IP	serine/threonine kinase 11 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67004283-4	chr10	67003785	67004785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110511)	promoter-TSS (NR_110511)	-790.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4082976-4	chr7	4082480	4083480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033568, intron 6 of 8)	intron (NR_033568, intron 6 of 8)	-19776.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-143162236-4	chr4	143161725	143162725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256380, intron 5 of 7)	CpG-10608	-26063.0	NR_105988	102465618.0		NR_105988	ENSMUSG00000106597	Mir7021	mmu-mir-7021	microRNA 7021	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79753202-4	chr15	79752692	79753692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045069, exon 4 of 4)	non-coding (NR_045069, exon 4 of 4)	10494.0	NR_045069	100504191.0	Mm.421420	NR_045069	ENSMUSG00000087543	Gm16576	-	predicted gene 16576	ncRNA	15.0	12.5	10.5	6.0	18.5	13.5
Merged-chr15-93275354-4	chr15	93274831	93275831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346785)	promoter-TSS (NM_001346785)	-152.0	NM_001346785	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58137159-2	chr15	58136659	58137659	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2077.0	NM_027435	70472.0	Mm.221758	NM_027435	ENSMUSG00000022360	Atad2	2610509G12Rik	ATPase family, AAA domain containing 2	protein-coding	8.5	0.0	1.5	7.0	0.0	1.5
Merged-chr7-145250488-1	chr7	145249988	145250988	+	1000.0	f1_balb.idr	intron (NR_132644, intron 24 of 24)	intron (NR_132644, intron 24 of 24)	33523.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	0.0	0.5	2.0	0.0	0.0	0.0
Merged-chr7-25129707-4	chr7	25129224	25130224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163556, intron 1 of 13)	intron (NM_001163556, intron 1 of 13)	2736.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127894143-4	chr3	127893653	127894653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027482, intron 1 of 1)	intron (NM_027482, intron 1 of 1)	2170.0	NM_027482	70617.0	Mm.317049	NM_027482	ENSMUSG00000050549	Fam241a	2700063A17Rik|5730508B09Rik|C80506	family with sequence similarity 241, member A	protein-coding	40.0	111.5	30.5	25.5	75.5	48.5
Merged-chr1-162547211-4	chr1	162546728	162547728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144877, intron 1 of 7)	intron (NM_144877, intron 1 of 7)	1117.0	NM_144877	71449.0	Mm.270569	NM_144877	ENSMUSG00000026694	Mettl13	5630401D24Rik	methyltransferase like 13	protein-coding	74.5	138.0	129.0	141.0	171.0	114.5
Merged-chr3-103809474-4	chr3	103808965	103809965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163552)	promoter-TSS (NM_001163552)	-52.0	NM_001163552	67489.0	Mm.197568	NM_026193	ENSMUSG00000032952	Ap4b1	1810038H16Rik|AV004952|Ap4b4	adaptor-related protein complex AP-4, beta 1	protein-coding	80.0	113.0	122.5	36.0	129.0	101.5
Merged-chr10-78169844-4	chr10	78169330	78170330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138601)	promoter-TSS (NM_138601)	-62.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120832013-4	chr14	120831504	120832504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79190.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112849541-2	chr12	112849041	112850041	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11375.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127600401-4	chr10	127599895	127600895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	20753.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5704280-2	chr19	5703780	5704780	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010609)	promoter-TSS (NM_010609)	-191.0	NM_010609	16530.0	Mm.440033	NM_010609	ENSMUSG00000024936	Kcnk7	2310014G03Rik|Kcnk6|Kcnk8|Knot|Mlk3	potassium channel, subfamily K, member 7	protein-coding	2.5	0.0	4.5	1.5	0.0	0.0
Merged-chr17-24850414-4	chr17	24849889	24850889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024284)	promoter-TSS (NM_024284)	-87.0	NM_023480	68636.0	Mm.347964	NM_023480	ENSMUSG00000045316	Fahd1	1110025H10Rik|AV002085	fumarylacetoacetate hydrolase domain containing 1	protein-coding	108.0	219.5	148.5	119.0	327.5	159.5
Merged-chr8-107269792-4	chr8	107269284	107270284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).3	intron (NR_039557, intron 2 of 3).3	13620.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85992204-4	chr12	85991704	85992704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	86837.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121616590-2	chr9	121616090	121617090	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026915, intron 1 of 5)	intron (NM_026915, intron 1 of 5)	25003.0	NM_026915	69032.0	Mm.33351	NM_026915	ENSMUSG00000032530	Lyzl4	1810009N24Rik|AI504271|Lyc4|Lyza	lysozyme-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158136455-4	chr2	158135968	158136968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 3 of 12)	intron (NM_009373, intron 3 of 12)	9924.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-30612687-4	chr17	30612195	30613195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025374)	promoter-TSS (NM_025374)	-36.0	NM_001113560	109801.0	Mm.261984	NM_025374	ENSMUSG00000024026	Glo1	0610009E22Rik|1110008E19Rik|2510049H23Rik|AW550643|GLY1|Glo-1|Glo-1r|Glo-1s|Glo1-r|Glo1-s|Qglo	glyoxalase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31160137-2	chr14	31159637	31160637	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138672, intron 13 of 68)	intron (NM_138672, intron 13 of 68)	8504.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-74962198-2	chr7	74961698	74962698	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-68013.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-12036769-4	chr4	12036296	12037296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51161.0	NM_177861	329795.0	Mm.475125	NM_177861	ENSMUSG00000049488	Tmem67	5330408M12Rik|B230117O07|b2b1163.1Clo|b2b1291.1Clo	transmembrane protein 67	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-21070772-2	chr1	21070272	21071272	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177409, intron 1 of 10)	intron (NM_177409, intron 1 of 10)	8453.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	5.0	31.0	24.0	23.5	30.0	21.0
Merged-chr19-24432711-3	chr19	24432263	24433263	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008846, intron 3 of 14)	intron (NM_008846, intron 3 of 14)	44711.0	NM_026520	68034.0	Mm.440181	NM_026520	ENSMUSG00000074922	Fam122a	2410124L17Rik|2900009I07Rik|Gm9849	family with sequence similarity 122, member A	protein-coding	10.0	31.0	18.0	3.5	20.0	9.0
Merged-chr8-108683906-4	chr8	108683406	108684406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30738.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141393032-4	chr7	141392522	141393522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011528, intron 1 of 7)	intron (NM_011528, intron 1 of 7)	862.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-53587840-4	chr17	53587335	53588335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190846, intron 1 of 17)	L2a|LINE|L2	3709.0	NM_001190846	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	4.0	34.5	24.0	8.5	15.0	18.0
Merged-chr7-143296658-4	chr7	143296182	143297182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_001461)	promoter-TSS (NR_001461)	-135.0	NR_001461	63830.0	Mm.356096	NR_001461	ENSMUSG00000101609	Kcnq1ot1	Kvlqt1-as|Lit1|Tssc8	KCNQ1 overlapping transcript 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-13529245-2	chr13	13528745	13529745	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61164.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127080125-4	chr2	127079594	127080594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026678, intron 1 of 7)	MTD|LTR|ERVL-MaLR	9437.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	44.0	114.5	78.5	17.0	51.0	44.0
Merged-chr14-122060863-4	chr14	122060373	122061373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26199.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	1.5	5.0	0.0	0.0	0.0	1.0
Merged-chr16-38090007-2	chr16	38089507	38090507	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033221)	promoter-TSS (NR_033221)	-747.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	81.0	87.0	95.0	72.5	84.5	77.5
Merged-chr5-24383618-4	chr5	24383124	24384124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001002897)	TTS (NM_001002897)	8519.0	NM_001002897	213948.0	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90742250-4	chr5	90741762	90742762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17036.0	NM_009141	20311.0	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	18.5	61.0	38.0	5.5	17.5	21.0
Merged-chr2-93462015-4	chr2	93461520	93462520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271461)	promoter-TSS (NM_001271461)	-169.0	NM_001271461	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	1.0	5.0	8.0	7.5	21.5	2.5
Merged-chr7-16119059-1	chr7	16118559	16119559	+	1000.0	f1_balb.idr	promoter-TSS (NM_133727)	promoter-TSS (NM_133727)	-817.0	NM_133727	70394.0	Mm.41101	NM_133727	ENSMUSG00000006021	Kptn	2310042D10Rik|2E4|C030013F01Rik	kaptin	protein-coding	15.5	17.0	3.5	3.5	10.0	22.0
Merged-chr5-132467218-1	chr5	132466718	132467718	+	1000.0	f0_balb.idr	intron (NM_177047, intron 1 of 19)	intron (NM_177047, intron 1 of 19)	75125.0	NM_177047	319974.0	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-90873263-4	chr8	90872704	90873704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	44369.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	24.0	43.5	59.5	96.0	141.0	120.0
Merged-chr18-8694347-3	chr18	8693829	8694829	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-518527.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106488457-3	chr11	106487961	106488961	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023913)	promoter-TSS (NM_023913)	-665.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91727537-4	chr16	91727022	91728022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026994, intron 1 of 11)	intron (NM_026994, intron 1 of 11)	1280.0	NM_026994	66609.0	Mm.109823	NM_026994	ENSMUSG00000058240	Cryzl1	2210407J23Rik|2410006O11Rik|QOH-1	crystallin, zeta (quinone reductase)-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59338639-4	chr2	59338114	59339114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 13 of 20)	intron (NM_175464, intron 13 of 20)	48068.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69767682-4	chr11	69767183	69768183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029348, intron 1 of 3)	intron (NM_029348, intron 1 of 3)	1771.0	NM_029348	75580.0	Mm.426361	NM_029348	ENSMUSG00000018750	Zbtb4	2310026P19Rik|9230111I22Rik|mKIAA1538	zinc finger and BTB domain containing 4	protein-coding	52.0	150.0	69.0	51.5	113.5	86.5
Merged-chr7-99401604-4	chr7	99401103	99402103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201352, intron 2 of 17)	MIR|SINE|MIR	20085.0	NM_001362166	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	0.5	1.0	15.0	13.0	13.0	11.5
Merged-chr9-58269561-4	chr9	58269053	58270053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16389.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146221453-4	chr5	146220963	146221963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256086)	promoter-TSS (NM_001256086)	-6.0	NM_028774	74132.0	Mm.26696	NM_028774	ENSMUSG00000029634	Rnf6	1200013I08Rik|5730419H05Rik|AA537053	ring finger protein (C3H2C3 type) 6	protein-coding	25.0	50.0	63.0	15.5	21.0	35.0
Merged-chr11-116840646-1	chr11	116840146	116841146	+	1000.0	f1_c57bl6.idr	intron (NM_033398, intron 3 of 5)	intron (NM_033398, intron 3 of 5)	2803.0	NM_033398	107817.0	Mm.481684	NM_033398	ENSMUSG00000056962	Jmjd6	5730436I23Rik|D11Ertd195e|PSR|PtdSerR|Ptdsr|mKIAA0585	jumonji domain containing 6	protein-coding	4.5	12.0	8.5	0.0	1.0	0.0
Merged-chr4-133553189-4	chr4	133552591	133553591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011850)	promoter-TSS (NM_011850)	-285.0	NM_011850	23957.0	Mm.346759	NM_011850	ENSMUSG00000037583	Nr0b2	SHP|SHP-1|Shp1	nuclear receptor subfamily 0, group B, member 2	protein-coding	2.5	10.0	3.0	3.0	4.5	4.5
Merged-chr9-110131969-4	chr9	110131450	110132450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009211)	promoter-TSS (NM_009211)	-74.0	NM_009211	20588.0	Mm.85410	NM_009211	ENSMUSG00000032481	Smarcc1	AI115498|BAF155|Rsc8|SRG3|msp3	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38567596-3	chr15	38567089	38568089	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045757, intron 2 of 2)	intron (NR_045757, intron 2 of 2)	27345.0	NR_045757	69679.0	Mm.416890	NR_045757	ENSMUSG00000102106	2310043O21Rik	-	RIKEN cDNA 2310043O21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151036704-4	chr1	151036224	151037224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43289.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45457470-4	chr7	45456963	45457963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010240)	TTS (NM_010240)	2423.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	33.5	72.5	64.5	33.5	73.0	62.5
Merged-chr18-82870141-2	chr18	82869641	82870641	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14244.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-10048641-4	chr2	10048117	10049117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027748)	promoter-TSS (NM_027748)	-8.0	NM_027748	209361.0	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53267103-2	chr18	53266603	53267603	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	21441.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	39.5	91.5	94.5	54.0	62.5	78.0
Merged-chr18-10706807-4	chr18	10706306	10707306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045379)	promoter-TSS (NR_045379)	-54.0	NR_045379	75370.0	Mm.159511	NR_045379	ENSMUSG00000097387	4930563E18Rik	-	RIKEN cDNA 4930563E18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119838970-3	chr8	119838483	119839483	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	1596.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-21205315-3	chr2	21204823	21205823	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027728)	promoter-TSS (NM_027728)	42.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141664832-2	chr4	141664332	141665332	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033150)	promoter-TSS (NM_001033150)	-717.0	NM_001033150	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	2.5	0.0	5.5	0.0	6.5	2.0
Merged-chr1-38013325-4	chr1	38012803	38013803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198303, intron 1 of 23)	intron (NM_198303, intron 1 of 23)	15293.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53951280-4	chr18	53950789	53951789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152809, intron 12 of 12)	intron (NM_152809, intron 12 of 12)	89176.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135300475-4	chr4	135299980	135300980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-27720.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84618841-4	chr2	84618335	84619335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355064, intron 5 of 18)	MIRc|SINE|MIR	30645.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93045647-4	chr2	93045153	93046153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177536, intron 1 of 6)	CpG	491.0	NM_001177536	100042784.0	Mm.102816	NM_001177536	ENSMUSG00000075028	Prdm11	8030443D09Rik|AA163972|Gm707	PR domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31390594-2	chr14	31390094	31391094	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	27083.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33891768-4	chr16	33891267	33892267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 5 of 14)	intron (NM_001145884, intron 5 of 14)	62102.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28810746-4	chr7	28810245	28811245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177301)	promoter-TSS (NM_177301)	-145.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	1.0	7.0	2.5	0.5	5.0	2.5
Merged-chr15-80234706-2	chr15	80234206	80235206	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357659, exon 2 of 7)	5' UTR (NM_001357659, exon 2 of 7)	626.0	NM_178719	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	21.5	70.0	47.5	29.5	78.5	72.0
Merged-chr6-129333983-4	chr6	129333487	129334487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2206.0	NM_199034	381816.0	Mm.46114	NM_199034	ENSMUSG00000047720	4922502D21Rik	Clec2m|Gm1074|SPATA78	RIKEN cDNA 4922502D21 gene	protein-coding	7.0	11.5	16.5	5.0	25.5	13.0
Merged-chr10-98684328-4	chr10	98683849	98684849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-230293.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152733828-2	chr2	152733328	152734328	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2423.0	NM_010495	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	1.5	0.0	0.0	0.0	0.0	0.0
Merged-chr3-139042168-4	chr3	139041668	139042668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 2 of 13)	MTEb|LTR|ERVL-MaLR	33033.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	10.5	57.5	14.5	24.5	32.5	26.5
Merged-chr7-104400887-4	chr7	104400369	104401369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42223.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	44.5	154.0	91.5	82.0	181.5	100.5
Merged-chr7-49046512-4	chr7	49046031	49047031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	87458.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117322139-4	chr8	117321601	117322601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-27069.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-92488358-2	chr2	92487858	92488858	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27840.0	NM_145832	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59620107-4	chr15	59619628	59620628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28526.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	13.5	21.0	24.0	4.0	16.5	17.5
Merged-chr1-105992225-1	chr1	105991725	105992725	+	1000.0	f1_balb.idr	intron (NM_001122675, intron 1 of 12)	intron (NM_001122675, intron 1 of 12)	1819.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	45.0	98.0	46.5	31.5	71.0	51.0
Merged-chr6-125010185-4	chr6	125009659	125010659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347452)	promoter-TSS (NM_001347452)	-222.0	NM_001347452	269800.0	Mm.108677	NM_175557	ENSMUSG00000038346	Zfp384	BB163993|C130073D16Rik|Ciz|NP|Nmp4	zinc finger protein 384	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76225925-4	chr16	76225427	76226427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103314.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127137274-4	chr2	127136772	127137772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3318.0	NM_144818	215387.0	Mm.29786	NM_144818	ENSMUSG00000034906	Ncaph	A730011O11Rik|Brrn1|CAP-H|HCAP-H|mCAP-H	non-SMC condensin I complex, subunit H	protein-coding	7.5	20.5	18.0	19.0	23.5	19.0
Merged-chr13-104228871-4	chr13	104228382	104229382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021790)	promoter-TSS (NM_021790)	-38.0	NM_172807	238831.0	Mm.98910	NM_172807	ENSMUSG00000021713	Ppwd1	4632422M10Rik|A330090G21Rik	peptidylprolyl isomerase domain and WD repeat containing 1	protein-coding	14.5	21.5	16.5	5.5	15.5	16.5
Merged-chr2-128782834-2	chr2	128782333	128783333	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 14 of 18)	intron (NM_008587, intron 14 of 18)	-35470.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	5.0	15.5	15.0	4.5	8.5	18.0
Merged-chr3-19630269-4	chr3	19629765	19630765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14195.0	NM_001081281	381485.0	Mm.35419	NM_001081281	ENSMUSG00000060913	Trim55	D830041C10Rik|Murf2|Rnf29	tripartite motif-containing 55	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137365837-4	chr4	137365347	137366347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8088.0	NM_001243769	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	48.0	110.0	113.5	27.5	139.5	99.5
Merged-chr15-78334633-4	chr15	78334236	78335236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358854, intron 2 of 14)	intron (NM_001358854, intron 2 of 14)	8746.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	0.0	5.0	1.5	0.0	1.0	6.5
Merged-chr12-76615463-4	chr12	76614972	76615972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013675, intron 15 of 35)	ORR1D2-int|LTR|ERVL-MaLR	-67547.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-53573242-4	chr6	53572714	53573714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172728)	promoter-TSS (NM_172728)	-160.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	49.5	141.5	75.0	23.0	111.0	43.5
Merged-chr1-52366517-3	chr1	52366022	52367022	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-133290.0	NM_001113383	14660.0	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	0.0	0.0	5.0	3.0	6.0	0.5
Merged-chr5-121220190-4	chr5	121219682	121220682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181421)	promoter-TSS (NM_181421)	-37.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	0.0	13.0	3.0	0.0	13.5	3.5
Merged-chr5-64795938-4	chr5	64795454	64796454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7569.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101247766-1	chr15	101247266	101248266	+	1000.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-19080.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	24.5	54.0	21.0	23.5	20.0	31.5
Merged-chr14-122649643-4	chr14	122649117	122650117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 8 of 24)	intron (NR_153443, intron 8 of 24)	115289.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-34453843-2	chr15	34453297	34454297	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173421, intron 1 of 2)	intron (NM_173421, intron 1 of 2)	485.0	NM_173421	239368.0	Mm.211977	NM_173421	ENSMUSG00000044726	Erich5	-	glutamate rich 5	protein-coding	0.0	3.0	0.0	0.0	2.0	2.5
Merged-chr4-32249910-4	chr4	32249434	32250434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-167501.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	41.5	60.5	61.0	6.5	8.5	20.0
Merged-chr16-44773857-4	chr16	44773362	44774362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	8126.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165874996-4	chr2	165874485	165875485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	3452.0	NM_001291158	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	23.0	147.5	112.5	32.0	119.5	89.5
Merged-chr5-66015728-4	chr5	66015242	66016242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001127382)	TTS (NM_001127382)	-11457.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54771183-4	chr14	54770666	54771666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	10720.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	103.0	312.0	169.5	58.0	107.0	71.5
Merged-chr8-53496408-4	chr8	53495896	53496896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15306.0	NM_001205054	11593.0	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-9893318-4	chr1	9892818	9893818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133220, intron 17 of 17)	intron (NM_133220, intron 17 of 17)	-15320.0	NM_177722	240697.0	Mm.259800	NM_177722	ENSMUSG00000046101	Mcmdc2	6030422M02Rik	minichromosome maintenance domain containing 2	protein-coding	60.0	125.5	98.0	47.5	131.5	99.0
Merged-chr5-72184146-4	chr5	72183645	72184645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15956.0	NM_001356614	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-81454710-4	chr16	81454213	81455213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113208, intron 5 of 17)	intron (NM_001113208, intron 5 of 17)	254016.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23531045-4	chr13	23530532	23531532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153173)	promoter-TSS (NM_153173)	-12.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115423242-4	chr8	115422741	115423741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	283653.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128298421-4	chr10	128297914	128298914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031252)	promoter-TSS (NM_031252)	-330.0	NM_031252	83430.0	Mm.125482	NM_031252	ENSMUSG00000025383	Il23a	IL-23|p19	interleukin 23, alpha subunit p19	protein-coding	11.0	10.5	13.0	8.5	15.0	17.5
Merged-chr13-48878760-4	chr13	48878231	48879231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033268)	TTS (NM_001033268)	-7846.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-83994119-4	chr2	83993622	83994622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52896.0	NM_027964	71861.0	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	0.0	1.0	4.5	5.0	2.0	5.5
Merged-chr15-36701914-2	chr15	36701414	36702414	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89018.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34846214-4	chr8	34845729	34846729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 20 of 26)	intron (NM_175091, intron 20 of 26)	38619.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	61.5	39.5	34.5	36.0	45.0	41.5
Merged-chr11-102556309-4	chr11	102555775	102556775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159492)	promoter-TSS (NM_001159492)	-117.0	NM_001159492	237943.0	Mm.260282	NM_001159492	ENSMUSG00000034621	Gpatch8	5430405G24Rik|AU018890|Fbm1|Gpatc8|mKIAA0553	G patch domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82862343-4	chr18	82861852	82862852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	6455.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-10591330-4	chr2	10590845	10591845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001198808, exon 23 of 23)	3' UTR (NM_001198808, exon 23 of 23)	73190.0	NR_035418	100316831.0		NR_035418	ENSMUSG00000080594	Mir669h	Mirn669h|mir-669h|mmu-mir-669h	microRNA 669h	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136803927-2	chr6	136803419	136804419	+	1000.0	f0_c57.idr|f1_balb.idr	TTS (NM_175652)	TTS (NM_175652)	512.0	NM_175652	320332.0	Mm.246720	NM_175652	ENSMUSG00000096010	Hist4h4	B130044J01Rik	histone cluster 4, H4	protein-coding	11.5	41.5	33.5	21.0	50.0	31.5
Merged-chr1-106796263-2	chr1	106795763	106796763	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009190, intron 1 of 10)	CpG	462.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	93.0	229.0	154.5	100.5	194.5	130.0
Merged-chr15-58266620-4	chr15	58266099	58267099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51707.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84748329-3	chr3	84747829	84748829	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67248.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.0	0.0	2.5	1.5	5.5	1.5
Merged-chr2-39226397-4	chr2	39225899	39226899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024209)	promoter-TSS (NM_024209)	-50.0	NM_024209	67857.0	Mm.389242	NM_024209	ENSMUSG00000026753	Ppp6c	2310003C10Rik|Pp6C	protein phosphatase 6, catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108554919-8	chr6	108554442	108555442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65199.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144594050-4	chr2	144593581	144594581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033297)	promoter-TSS (NM_001033297)	16.0	NM_001033297	228715.0	Mm.27391	NM_001033297	ENSMUSG00000074754	Smim26	Gm561	small integral membrane protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53353650-4	chr4	53353160	53354160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83428.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126806008-4	chr8	126805515	126806515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43005.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43478353-4	chr4	43477845	43478845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5364.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	34.5	69.0	41.5	36.0	85.0	38.0
Merged-chr10-62491623-4	chr10	62491132	62492132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4827.0	NM_001358543	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85374284-4	chr12	85373781	85374781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 1 of 4)	CpG	436.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136809880-4	chr6	136809368	136810368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177688, exon 1 of 1)	3' UTR (NM_177688, exon 1 of 1)	1620.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	68.5	187.5	138.0	86.5	223.5	149.0
Merged-chr6-125164810-4	chr6	125164309	125165309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289726, intron 2 of 6)	CpG	964.0	NM_008084	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	97.5	181.5	157.5	72.0	231.0	147.0
Merged-chr10-40258590-4	chr10	40258087	40259087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026113)	promoter-TSS (NM_026113)	-875.0	NM_001359492	67371.0	Mm.64104	NM_026113	ENSMUSG00000019837	Gtf3c6	2410016F19Rik|AU019813	general transcription factor IIIC, polypeptide 6, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25698601-2	chr17	25698101	25699101	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18571.0	NM_022422	64337.0	Mm.171123	NM_022422	ENSMUSG00000025739	Gng13	1500031D04Rik|AB030194|Ggamma13	guanine nucleotide binding protein (G protein), gamma 13	protein-coding	3.0	0.0	0.5	2.0	0.0	1.0
Merged-chr4-124645349-4	chr4	124644854	124645854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12292.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	2.5	13.0	3.0	0.0	0.0	2.0
Merged-chr4-32575397-4	chr4	32574910	32575910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001109661, exon 4 of 5)	exon (NM_001109661, exon 4 of 5)	-3748.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10305810-4	chr19	10305301	10306301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198114)	promoter-TSS (NM_198114)	-924.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	5.0	39.0	9.0	5.0	36.5	10.5
Merged-chr9-64789496-4	chr9	64788997	64789997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21514.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-89100656-4	chr11	89100157	89101157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26816.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	5.0	26.5	5.0	0.0	11.0	1.0
Merged-chr12-71137186-4	chr12	71136711	71137711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286203)	promoter-TSS (NM_001286203)	363.0	NM_001163378	76967.0	Mm.87290	NM_029818	ENSMUSG00000034601	2700049A03Rik	Ta3|Talpid3|mKIAA0586	RIKEN cDNA 2700049A03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64617241-4	chr1	64616735	64617735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025964)	promoter-TSS (NM_025964)	-67.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-19942413-4	chr4	19941901	19942901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19835.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75654173-4	chr11	75653673	75654673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080774, intron 1 of 31)	intron (NM_001080774, intron 1 of 31)	-1842.0	NM_001080775	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	52.0	124.5	110.0	49.5	131.0	98.5
Merged-chr7-114415276-4	chr7	114414760	114415760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011055)	promoter-TSS (NM_011055)	6.0	NM_011055	18576.0	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114362576-4	chr6	114362075	114363075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-35361.0	NM_001317125	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83600783-4	chr11	83600287	83601287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 1 of 8)	intron (NR_036453, intron 1 of 8)	-7700.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-110600198-4	chr13	110599687	110600687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5|LINE|L1	205143.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	32.0	19.5	14.5	15.0	44.5	19.0
Merged-chr12-76961653-4	chr12	76961195	76962195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361663, intron 1 of 4)	intron (NM_001361663, intron 1 of 4)	553.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42129116-4	chr19	42128621	42129621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027106)	promoter-TSS (NM_027106)	-128.0	NM_027106	69534.0	Mm.30060	NM_027106	ENSMUSG00000018821	Avpi1	2310008N12Rik|AA410041|VIT32|esu|mVIT32	arginine vasopressin-induced 1	protein-coding	27.0	31.5	32.5	4.5	7.0	38.5
Merged-chr6-98332896-4	chr6	98332372	98333372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128092, intron 2 of 3)	intron (NM_001128092, intron 2 of 3)	9882.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	7.0	9.0	17.5	3.0	17.0	7.0
Merged-chr10-19062248-4	chr10	19061726	19062726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46816.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	90.5	183.0	109.5	57.0	182.0	138.0
Merged-chr11-64079533-4	chr11	64079023	64080023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033780)	promoter-TSS (NR_033780)	39.0	NR_033780	66456.0	Mm.124828	NR_033780	ENSMUSG00000087497	2810001G20Rik	AW045514	RIKEN cDNA 2810001G20 gene	ncRNA	66.0	101.5	97.0	55.5	93.5	63.5
Merged-chr16-30789150-4	chr16	30788646	30789646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	189423.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-176827648-4	chr1	176827154	176828154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 3 of 18)	intron (NM_001357390, intron 3 of 18)	8479.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	85.0	239.5	179.5	47.5	186.5	134.0
Merged-chr2-177840357-4	chr2	177839841	177840841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024849)	promoter-TSS (NM_001024849)	-5.0	NM_001024849	329575.0	Mm.425123	NM_001024849	ENSMUSG00000095362	Gm14325	-	predicted gene 14325	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-67072467-4	chr14	67071997	67072997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205188)	promoter-TSS (NM_001205188)	-26.0	NM_001205188	71978.0	Mm.273997	NM_028032	ENSMUSG00000022052	Ppp2r2a	2410004D02Rik|mKIAA1541	protein phosphatase 2, regulatory subunit B, alpha	protein-coding	21.5	48.5	57.0	21.0	54.5	63.5
Merged-chr2-75705361-4	chr2	75704849	75705849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010902)	promoter-TSS (NM_010902)	-686.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	108.5	174.0	133.0	62.0	189.5	95.0
Merged-chr2-167831144-2	chr2	167830644	167831644	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101183.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70805075-4	chr8	70804579	70805579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3370.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	35.0	111.0	79.0	38.0	71.0	59.5
Merged-chr11-69097131-4	chr11	69096612	69097612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1837.0	NM_011065	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-78895853-4	chr7	78895352	78896352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162939)	promoter-TSS (NM_001162939)	-75.0	NM_026531	68048.0	Mm.34109	NM_026531	ENSMUSG00000030609	Aen	2700083B06Rik|Isg20l1	apoptosis enhancing nuclease	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59207823-4	chr2	59207303	59208303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	46953.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80015563-4	chr7	80015067	80016067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9247.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59730314-2	chr15	59729814	59730814	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64645.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113949953-4	chr13	113949415	113950415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 3 of 4)	intron (NM_172595, intron 3 of 4)	155407.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77828708-4	chr9	77828168	77829168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	74133.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134922964-4	chr6	134922464	134923464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009875, intron 2 of 2)	intron (NM_009875, intron 2 of 2)	2563.0	NM_009875	12576.0	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	36.5	103.5	33.5	29.5	109.5	84.5
Merged-chr6-87887845-4	chr6	87887333	87888333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017477)	promoter-TSS (NM_017477)	-107.0	NM_017477	54161.0	Mm.258785	NM_017477	ENSMUSG00000030058	Copg1	AU019265|BC056168|Copg|D6Ertd71e|D6Wsu16e	coatomer protein complex, subunit gamma 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103802383-4	chr3	103801868	103802868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040412)	promoter-TSS (NR_040412)	-761.0	NR_040412	100503157.0	Mm.445554	NR_040412	ENSMUSG00000084997	Gm15471	-	predicted gene 15471	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-41072312-4	chr9	41071807	41072807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	7199.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	46.0	79.5	78.0	19.0	63.5	61.0
Merged-chr19-41319821-2	chr19	41319321	41320321	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 8 of 16)	intron (NM_031376, intron 8 of 16)	-55817.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	1.0	5.5	1.5	0.0	2.5	0.5
Merged-chr10-75212071-4	chr10	75211569	75212569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145826)	promoter-TSS (NM_001145826)	-4.0	NM_153406	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-43443077-4	chr8	43442576	43443576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85061.0	NM_001009547	382007.0	Mm.55952	NM_001009547	ENSMUSG00000063900	Adam26b	-	a disintegrin and metallopeptidase domain 26B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118111226-4	chr2	118110733	118111733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011580)	promoter-TSS (NM_011580)	-31.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32113672-4	chr17	32113167	32114167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22244.0	NR_027316	435518.0	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24254725-4	chr7	24254258	24255258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018791)	promoter-TSS (NM_018791)	-36.0	NM_018791	54678.0	Mm.468052	NM_018791	ENSMUSG00000030486	Zfp108	-	zinc finger protein 108	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116658009-4	chr11	116657506	116658506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163318, intron 2 of 4)	intron (NM_001163318, intron 2 of 4)	898.0	NM_001163318	100038570.0	Mm.390349	NM_001163318	ENSMUSG00000075410	Prcd	Gm11744	photoreceptor disc component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-129006408-4	chr5	129005904	129006904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152615, intron 1 of 11)	B3|SINE|B2	2168.0	NR_152615	13852.0	Mm.260716	NM_007941	ENSMUSG00000029428	Stx2	AW538950|Epim|G1-536-1|Syn-2|repro34	syntaxin 2	protein-coding	76.5	120.5	98.0	46.0	57.5	61.5
Merged-chr2-25622031-4	chr2	25621531	25622531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001109993)	promoter-TSS (NM_001109993)	-26.0	NM_001109993	51875.0	Mm.271147	NM_001040130	ENSMUSG00000026939	Tmem141	1110065P14Rik|AI663999|D2Ertd217e	transmembrane protein 141	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39619503-4	chr18	39619008	39620008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132263.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-25487078-4	chr18	25486611	25487611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362310, intron 11 of 12)	C-rich|Low_complexity|Low_complexity	192637.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26917029-4	chr2	26916517	26917517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013677)	promoter-TSS (NM_013677)	-487.0	NM_013677	20930.0	Mm.347512	NM_013677	ENSMUSG00000015790	Surf1	0610010F23Rik|Surf-1	surfeit gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50025644-3	chr11	50025184	50026184	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 1 of 7)	CpG	353.0	NM_001290750	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83658982-4	chr11	83658484	83659484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3600.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-10877848-3	chr15	10877360	10878360	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	48809.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34105028-4	chr17	34104544	34105544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-9735.0	NR_046183	414076.0	Mm.473092	NR_046183	ENSMUSG00000098197	BC051537	-	cDNA sequence BC051537	ncRNA	43.0	84.0	58.5	36.5	45.5	32.0
Merged-chr10-81352217-2	chr10	81351717	81352717	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1760.0	NM_001163166	15353.0	Mm.38474	NM_010440	ENSMUSG00000020232	Hmg20b	AW610687|BRAF35|Hmgx2|Hmgxb2|Smarce1r	high mobility group 20B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128420632-4	chr2	128420153	128421153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	MER44B|DNA|TcMar-Tigger	8698.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	59.5	115.5	113.0	48.5	112.5	109.5
Merged-chr19-55312011-4	chr19	55311516	55312516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025883, intron 3 of 10)	intron (NM_025883, intron 3 of 10)	4020.0	NM_001360595	66980.0	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6	zinc finger, DHHC domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-43748034-4	chr11	43747547	43748547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133795)	promoter-TSS (NM_133795)	-74.0	NM_133795	66827.0	Mm.271974	NM_133795	ENSMUSG00000041278	Ttc1	4833412C19Rik|C79328|TPR1	tetratricopeptide repeat domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49399512-3	chr7	49399007	49400007	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 4 of 37)	intron (NM_175272, intron 4 of 37)	153318.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172633062-4	chr1	172632526	172633526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026725)	promoter-TSS (NM_026725)	-52.0	NM_026725	68440.0	Mm.33024	NM_026725	ENSMUSG00000026544	Dusp23	1300005N15Rik|LDP-3	dual specificity phosphatase 23	protein-coding	234.5	487.0	445.5	219.0	450.0	343.0
Merged-chr5-122051673-4	chr5	122051188	122052188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1837.0	NM_001312908	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	18.0	27.0	44.0	20.0	32.0	43.5
Merged-chr2-84504480-4	chr2	84503991	84504991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046046, intron 1 of 2)	MTEa|LTR|ERVL-MaLR	2382.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	23.0	51.0	12.0	13.5	33.0	16.0
Merged-chr8-25018022-4	chr8	25017505	25018505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027194, intron 1 of 3)	intron (NM_027194, intron 1 of 3)	794.0	NM_027194	69742.0	Mm.28626	NM_027194	ENSMUSG00000031556	Tm2d2	2410018G23Rik|Blp1	TM2 domain containing 2	protein-coding	2.0	15.5	8.5	2.5	17.5	11.5
Merged-chr15-60825002-4	chr15	60824526	60825526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162926)	promoter-TSS (NM_001162926)	54.0	NM_001162926	399603.0	Mm.411968	NM_207269	ENSMUSG00000072568	Fam84b	BF642811|D330050I23Rik	family with sequence similarity 84, member B	protein-coding	1.0	2.0	0.5	1.0	2.0	0.5
Merged-chr15-27629134-2	chr15	27628634	27629634	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013792, intron 1 of 6)	intron (NM_001013792, intron 1 of 6)	1559.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46198963-4	chr18	46198481	46199481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170855)	promoter-TSS (NM_001170855)	-163.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143757120-4	chr7	143756633	143757633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9860.0	NM_203492	381974.0	Mm.297839	NM_203492	ENSMUSG00000050276	Mrgprg	Gm1098|Mrgg	MAS-related GPR, member G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32912013-3	chr11	32911505	32912505	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-87411.0	NM_027050	69351.0	Mm.65488	NM_027050	ENSMUSG00000020270	Smim23	1700008A04Rik	small integral membrane protein 23	protein-coding	0.0	1.0	0.0	1.5	12.0	8.5
Merged-chr9-59728102-4	chr9	59727577	59728577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20313.0	NM_001033498	546134.0	Mm.297580	NM_001033498	ENSMUSG00000074259	Gramd2	BC064463|Gramd2a	GRAM domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131084427-4	chr1	131083924	131084924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	13419.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	63.0	76.5	90.0	48.5	136.0	86.5
Merged-chr3-90383839-4	chr3	90383338	90384338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6100.0	NM_001316688	26568.0	Mm.45519	NM_011988	ENSMUSG00000027932	Slc27a3	Acsvl3|FATP-3|FATP3|Vlcs-3	solute carrier family 27 (fatty acid transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58802496-4	chr9	58801974	58802974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21038.0	NM_001081192	330953.0	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67593122-2	chr10	67592622	67593622	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-21163.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-74808708-4	chr13	74808218	74809218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009817)	promoter-TSS (NM_009817)	42.0	NM_001301153	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	53.0	122.0	115.0	9.0	30.5	34.0
Merged-chr16-91933760-2	chr16	91933260	91934260	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2130.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20892165-4	chr9	20891681	20892681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145610)	TTS (NM_145610)	4006.0	NM_145610	235036.0	Mm.2930	NM_145610	ENSMUSG00000004100	Ppan	A230087P06Rik|SSF1	peter pan homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82244527-4	chr15	82244027	82245027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080158)	promoter-TSS (NM_001080158)	-191.0	NM_001080158	66570.0	Mm.23596	NM_025639	ENSMUSG00000068101	Cenpm	2610019I03Rik|AI853711|Pane1	centromere protein M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50111245-4	chr17	50110742	50111742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	79255.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111473174-4	chr10	111472685	111473685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015781)	promoter-TSS (NM_015781)	-42.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59129212-4	chr2	59128708	59129708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 1 of 13)	L1MA6|LINE|L1	31475.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-92849866-4	chr8	92849369	92850369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008610, intron 11 of 12)	intron (NM_008610, intron 11 of 12)	-5464.0	NM_173014	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	46.0	48.5	38.5	4.0	13.5	12.5
Merged-chr4-134921873-2	chr4	134921373	134922373	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1752.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-76675704-2	chr2	76675204	76676204	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031256, intron 1 of 7)	CpG	389.0	NM_031256	83435.0	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-72438481-4	chr9	72437969	72438969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008613)	promoter-TSS (NM_008613)	-60.0	NM_008613	17427.0	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	6.5	12.0	2.5	4.5	2.5	0.0
Merged-chr13-20111463-4	chr13	20110948	20111948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	ORR1F|LTR|ERVL-MaLR	20941.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.5	4.0	4.5	0.0	0.5	2.0
Merged-chr1-180416087-2	chr1	180415587	180416587	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 4 of 7)	intron (NM_001081175, intron 4 of 7)	67417.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4203904-2	chr11	4203404	4204404	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	-14347.0	NM_028022	71962.0	Mm.7852	NM_028022	ENSMUSG00000020424	Gatsl3	2410008K03Rik|Castor1	GATS protein-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107756482-4	chr13	107755997	107756997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	69100.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89286914-4	chr6	89286434	89287434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1209.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29765021-2	chr2	29764521	29765521	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177392)	TTS (NM_001177392)	3493.0	NM_001177392	433416.0	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	-	predicted gene 13547	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67050117-2	chr10	67049617	67050617	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	45042.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-30771702-4	chr11	30771181	30772181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134013)	promoter-TSS (NM_134013)	-94.0	NM_134013	103554.0	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	55.0	94.0	85.0	47.0	92.0	93.5
Merged-chr15-100049837-4	chr15	100049337	100050337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	11173.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-79494419-4	chr14	79493923	79494923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 1 of 8)	intron (NM_007920, intron 1 of 8)	-13155.0	NM_018765	22380.0	Mm.476813	NM_018765	ENSMUSG00000022023	Wbp4	AW545037|BB101031|FBP21	WW domain binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-63655661-2	chr18	63655161	63656161	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36698.0	NM_016792	53382.0	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-151749973-3	chr3	151749475	151750475	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133871)	promoter-TSS (NM_133871)	-16.0	NM_133871	99899.0	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	6.0	21.0	15.5	7.0	65.5	33.5
Merged-chr4-106316167-4	chr4	106315667	106316667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183225)	promoter-TSS (NM_183225)	-46.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95000800-4	chr8	95000299	95001299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018882, intron 1 of 13)	intron (NM_018882, intron 1 of 13)	16400.0	NM_018882	14766.0	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64668653-4	chr17	64668135	64669135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 7 of 21)	intron (NM_008549, intron 7 of 21)	66986.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57189700-4	chr16	57189213	57190213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 10 of 17)	intron (NM_026254, intron 10 of 17)	11758.0	NM_001358434	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	26.0	14.5	35.0	16.5	59.0	41.0
Merged-chr15-103305821-2	chr15	103305321	103306321	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4617.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84811068-4	chr2	84810571	84811571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_024230)	TTS (NM_024230)	11581.0	NM_024230	68678.0	Mm.33452	NM_024230	ENSMUSG00000027077	Smtnl1	1110030K22Rik|CHASM	smoothelin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81831616-4	chr15	81831118	81832118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20204.0	NM_017376	21685.0	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	2.5	5.5	1.5	1.0	3.0	1.0
Merged-chr10-89732340-4	chr10	89731825	89732825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359468)	promoter-TSS (NM_001359468)	-30.0	NM_025914	67019.0	Mm.335292	NM_025914	ENSMUSG00000019948	Actr6	2010200J04Rik|AU044443|Arp6|ArpX|CDA12	ARP6 actin-related protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-87924273-2	chr18	87923773	87924773	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	969934.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46502251-4	chr19	46501727	46502727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_053100, exon 1 of 6)	5' UTR (NM_053100, exon 1 of 6)	579.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-67587629-4	chr3	67587130	67588130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025813, intron 4 of 15)	MTE2a|LTR|ERVL-MaLR	4862.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	2.5	5.5	11.0	2.5	4.5	8.5
Merged-chr5-140732517-2	chr5	140732017	140733017	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	intron (NM_173405, intron 2 of 7)	8390.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6363438-2	chr4	6362938	6363938	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2242.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	4.5	2.0	4.5	0.0	2.0	0.0
Merged-chr2-119156990-4	chr2	119156488	119157488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033136)	promoter-TSS (NM_001033136)	46.0	NM_001033136	67809.0	Mm.475909	NM_001033136	ENSMUSG00000070730	Rmdn3	1200015F23Rik|AI131757|Fam82a2|Ptpip51|RMD-3|Rmd3	regulator of microtubule dynamics 3	protein-coding	38.0	52.5	47.0	20.0	72.5	36.0
Merged-chr8-77112981-4	chr8	77112502	77113502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083906, intron 3 of 8)	intron (NM_001083906, intron 3 of 8)	210494.0	NM_001083906	110784.0	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-119377782-4	chr6	119377274	119378274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197985, intron 1 of 7)	ORR1E|LTR|ERVL-MaLR	10960.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-85811693-4	chr15	85811190	85812190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164625)	promoter-TSS (NM_001164625)	7.0	NM_001164626	72355.0	Mm.33706	NM_197998	ENSMUSG00000064284	Cdpf1	2210021J22Rik	cysteine rich, DPF motif domain containing 1	protein-coding	57.0	89.5	51.5	32.0	73.5	50.0
Merged-chr4-48045083-4	chr4	48044605	48045605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015743)	promoter-TSS (NM_015743)	-200.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114823401-4	chr5	114822891	114823891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181075)	promoter-TSS (NM_181075)	77.0	NM_181075	330173.0	Mm.482205	NM_181075	ENSMUSG00000092486	2610524H06Rik	-	RIKEN cDNA 2610524H06 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-59153582-4	chr3	59153082	59154082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287119)	promoter-TSS (NM_001287119)	46.0	NR_045641	320463.0	Mm.484506	NR_045641	ENSMUSG00000036381	F630111L10Rik	-	RIKEN cDNA F630111L10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58144740-3	chr15	58144242	58145242	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029734, intron 1 of 5)	intron (NM_029734, intron 1 of 5)	3376.0	NM_001326599	76773.0	Mm.26771	NM_029734	ENSMUSG00000022359	Wdyhv1	2410187C16Rik|AU014961|AW550036|Ntaq1	WDYHV motif containing 1	protein-coding	8.5	29.5	16.5	29.5	121.5	72.5
Merged-chr9-22093562-2	chr9	22093062	22094062	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5691.0	NM_009922	12797.0	Mm.4356	NM_009922	ENSMUSG00000001349	Cnn1	CN|CnnI	calponin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-105502573-3	chr9	105502093	105503093	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253831, intron 1 of 26)	intron (NM_001253831, intron 1 of 26)	-7460.0	NM_001253836	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	25.5	81.5	29.5	13.5	8.5	5.5
Merged-chr7-24081838-4	chr7	24081337	24082337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045486)	promoter-TSS (NM_001045486)	-60.0	NM_001289640	210135.0	Mm.32254	NM_172483	ENSMUSG00000057101	Zfp180	2310040I01Rik|AI852378|D130011P11|HHZ168	zinc finger protein 180	protein-coding	16.0	28.5	35.0	13.5	30.0	34.0
Merged-chr2-132019424-4	chr2	132018873	132019873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175445, intron 1 of 10)	intron (NM_175445, intron 1 of 10)	10615.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-88999430-4	chr11	88998924	88999924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009546)	promoter-TSS (NM_009546)	21.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	106.0	221.5	213.0	88.5	235.5	204.0
Merged-chr10-91300303-4	chr10	91299798	91300798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER89|LTR|ERV1	-79679.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-60847195-1	chr9	60846695	60847695	+	1000.0	f0_balb.idr	intron (NM_001357408, intron 3 of 19)	RSINE1|SINE|B4	52753.0	NM_001357407	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83658840-4	chr7	83658338	83659338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 12 of 18)	intron (NM_001360088, intron 12 of 18)	-3343.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0.0	4.0	4.5	3.5	10.0	7.0
Merged-chr14-60251970-3	chr14	60251414	60252414	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170591)	promoter-TSS (NM_170591)	-435.0	NM_001362439	71844.0	Mm.258051	NM_170591	ENSMUSG00000114797	Nupl1	1700017F11Rik|Nup58|mKIAA0410	nucleoporin like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29347853-4	chr17	29347341	29348341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019880)	promoter-TSS (NM_019880)	91.0	NM_019880	56462.0	Mm.3224	NM_019880	ENSMUSG00000024012	Mtch1	2310034O17Rik|AI255158|AU018396|C77849|PSAP	mitochondrial carrier 1	protein-coding	0.0	11.0	13.0	1.5	15.0	8.0
Merged-chr3-51415929-4	chr3	51415369	51416369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053089)	promoter-TSS (NM_053089)	-147.0	NM_053089	74838.0	Mm.275281	NM_053089	ENSMUSG00000063273	Naa15	5730450D16Rik|6330400I15|ASTBDN|Narg1|Tbdn-1|mNAT1	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73569230-4	chr7	73568729	73569729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10834.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-52120354-4	chr14	52119850	52120850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168515, intron 4 of 24)	intron (NM_001168515, intron 4 of 24)	9447.0	NM_023879	77945.0	Mm.21662	NM_023879	ENSMUSG00000057132	Rpgrip1	0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding	31.5	54.5	58.0	12.5	46.5	47.0
Merged-chr13-64180426-4	chr13	64179912	64180912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019986, intron 5 of 7)	C-rich|Low_complexity|Low_complexity	18546.0	NM_019986	56541.0	Mm.40989	NM_019986	ENSMUSG00000021476	Habp4	4933413D03Rik|4933428J01Rik	hyaluronic acid binding protein 4	protein-coding	3.0	14.5	8.5	7.5	5.5	10.5
Merged-chr11-69795416-4	chr11	69794896	69795896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291104)	TTS (NM_001291104)	541.0	NM_009601	11443.0	Mm.86425	NM_009601	ENSMUSG00000041189	Chrnb1	Achr-2|Acrb	cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-46033649-4	chr7	46033143	46034143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153057)	promoter-TSS (NM_153057)	-53.0	NM_153057	211548.0	Mm.274811	NM_153057	ENSMUSG00000030835	Nomo1	D7Ertd156e|Nomo|pM5	nodal modulator 1	protein-coding	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76482379-4	chr11	76481877	76482877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 2 of 21)	intron (NM_001346670, intron 2 of 21)	12118.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	68.0	199.5	153.0	112.0	199.5	168.0
Merged-chr2-118745665-4	chr2	118745174	118746174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301269)	promoter-TSS (NM_001301269)	-84.0	NM_001301269	100043272.0	Mm.398072	NM_001301269	ENSMUSG00000074918	Inafm2	5430417L22Rik	InaF motif containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9644436-4	chr3	9643940	9644940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34355.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0.0	4.5	3.5	0.0	4.5	3.5
Merged-chr16-70326789-4	chr16	70326284	70327284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 1 of 15)	L1MD2|LINE|L1	12835.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	2.5	7.0	8.5	9.5	0.0	1.5
Merged-chr19-43669587-4	chr19	43669089	43670089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145156, intron 1 of 3)	intron (NM_145156, intron 1 of 3)	5292.0	NM_145156	246696.0	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	2.0	26.0	9.0	6.0	11.5	9.0
Merged-chr6-39278531-4	chr6	39278027	39279027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71754.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128459659-2	chr10	128459159	128460159	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_106183)	TTS (NR_106183)	423.0	NM_001114097	68094.0	Mm.417338	NM_198160	ENSMUSG00000025369	Smarcc2	5930405J04Rik	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55463163-4	chr11	55462666	55463666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1958.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80178202-2	chr10	80177702	80178702	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-1280.0	NM_007909	13637.0	Mm.1478	NM_007909	ENSMUSG00000003070	Efna2	CEK7L|Elf1|Epl6|Eplg6|Lerk6	ephrin A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138304675-4	chr4	138304159	138305159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007838)	promoter-TSS (NM_007838)	-79.0	NM_007838	13200.0	Mm.7236	NM_007838	ENSMUSG00000028757	Ddost	-	dolichyl-di-phosphooligosaccharide-protein glycotransferase	protein-coding	23.5	99.0	41.5	26.0	23.0	14.5
Merged-chr6-22124722-4	chr6	22124214	22125214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081351, intron 10 of 21)	intron (NM_001081351, intron 10 of 21)	138804.0	NM_001081351	214642.0	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95042614-4	chr3	95042116	95043116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008951)	promoter-TSS (NM_008951)	-2.0	NM_008951	19185.0	Mm.2261	NM_008951	ENSMUSG00000005625	Psmd4	Af1|Mcb1|angiocidin	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	protein-coding	18.0	71.0	64.5	37.5	59.5	45.5
Merged-chr2-25589331-2	chr2	25588831	25589831	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024616, intron 7 of 14)	intron (NM_001024616, intron 7 of 14)	-9232.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107781969-4	chr13	107781466	107782466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 3 of 14)	intron (NM_145456, intron 3 of 14)	94569.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126833175-4	chr8	126832646	126833646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15874.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156459844-4	chr1	156459350	156460350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 2 of 15)	intron (NM_009230, intron 2 of 15)	14478.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	21.5	31.5	32.0	10.0	54.5	56.0
Merged-chr19-16219515-2	chr19	16219015	16220015	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	55417.0	NR_033228	595139.0	Mm.405662	NR_033228		E030024N20Rik	9030417F11Rik|Ppia-ps8	peptidylprolyl isomerase A pseudogene 8	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102069442-4	chr5	102068934	102069934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	CpG	487.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152581305-4	chr1	152580815	152581815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	43902.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103281108-2	chr15	103280608	103281608	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019817, intron 1 of 8)	intron (NM_019817, intron 1 of 8)	-4017.0	NR_029766	724064.0		NR_029766	ENSMUSG00000065560	Mir148b	Mirn148b|mir-148b	microRNA 148b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168981140-4	chr2	168980645	168981645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2876.0	NR_040326	75508.0	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25167609-4	chr9	25167126	25168126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15845.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-28024450-6	chr15	28023885	28024885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	CpG	1463.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158178283-2	chr2	158177783	158178783	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G1|LTR|ERVL-MaLR	-13725.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64727467-2	chr17	64726967	64727967	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 16 of 21)	L1_Mus3|LINE|L1	-39644.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47865695-4	chr19	47865220	47866220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026619)	promoter-TSS (NM_026619)	-74.0	NM_026619	68214.0	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	15.0	34.0	33.0	23.5	40.0	68.0
Merged-chr4-133615225-2	chr4	133614747	133615747	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001017968, exon 3 of 8)	exon (NM_001017968, exon 3 of 8)	-13079.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	6.0	30.5	22.5	80.0	139.0	261.5
Merged-chr15-38289153-4	chr15	38288656	38289656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	10744.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117158785-4	chr5	117158286	117159286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	25198.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	34.5	135.5	76.0	49.0	93.0	88.5
Merged-chr1-93069502-4	chr1	93068977	93069977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294150, intron 9 of 46)	intron (NM_001294150, intron 9 of 46)	13003.0	NM_001294150	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101425038-4	chr11	101424536	101425536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172566)	promoter-TSS (NM_172566)	-49.0	NM_172566	217201.0	Mm.305941	NM_172566	ENSMUSG00000035007	Rundc1	AW125546|D930024B17	RUN domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-67008747-7	chr14	67008279	67009279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009761)	promoter-TSS (NM_009761)	98.0	NM_009761	12177.0	Mm.29820	NM_009761	ENSMUSG00000022051	Bnip3l	C86132|D14Ertd719e|Nip3L|Nix	BCL2/adenovirus E1B interacting protein 3-like	protein-coding	7.5	25.5	19.5	15.5	35.5	28.0
Merged-chr2-150786703-4	chr2	150786221	150787221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153781)	promoter-TSS (NM_153781)	-75.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85489392-4	chr12	85488865	85489865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TGG)n|Simple_repeat|Simple_repeat	15475.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67714425-4	chr15	67713932	67714932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	487663.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	0.0	0.0	0.5	8.0	0.0	0.0
Merged-chr11-50213185-4	chr11	50212683	50213683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2363.0	NM_011018	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-100435396-4	chr9	100434942	100435942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51031.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	13.0	40.0	35.0	23.5	55.0	53.5
Merged-chr4-44234088-4	chr4	44233580	44234580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12813.0	NR_039565	100628618.0		NR_039565	ENSMUSG00000092677	Mir5106	mir-5106|mmu-mir-5106|mu-mir-5106	microRNA 5106	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-44119699-8	chr1	44119192	44120192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023645)	promoter-TSS (NM_023645)	164.0	NM_001357048	246229.0	Mm.386883	NM_144558	ENSMUSG00000041684	Bivm	AI854267	basic, immunoglobulin-like variable motif containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74284892-4	chr1	74284376	74285376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190444)	promoter-TSS (NM_001190444)	-138.0	NM_146110	227290.0	Mm.379371	NM_146110	ENSMUSG00000006299	Aamp	AU040907|Aamp-rs	angio-associated migratory protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95672987-2	chr3	95672487	95673487	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14266.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	4.5	14.5	16.0	7.5	27.0	19.5
Merged-chr12-3856230-4	chr12	3855724	3856724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 3 of 22)	intron (NM_007872, intron 3 of 22)	6020.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65665778-4	chr3	65665283	65666283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166659)	promoter-TSS (NM_001166659)	-445.0	NM_001037923	624866.0	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding	58.5	130.5	105.0	70.5	168.0	113.5
Merged-chr13-41359021-4	chr13	41358521	41359521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017464)	promoter-TSS (NM_017464)	-20.0	NM_017464	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-91807549-6	chr13	91807027	91808027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145453, intron 1 of 5)	CpG	169.0	NM_145453	69085.0	Mm.52356	NM_145453	ENSMUSG00000021621	Zcchc9	1810019C21Rik	zinc finger, CCHC domain containing 9	protein-coding	4.5	7.5	8.0	2.0	3.0	2.5
Merged-chr9-98563658-4	chr9	98563164	98564164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015827)	promoter-TSS (NM_015827)	-53.0	NR_029444	75881.0	Mm.483402	NM_175227	ENSMUSG00000051074	4930579K19Rik	-	RIKEN cDNA 4930579K19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89091008-4	chr3	89090535	89091535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028188, intron 2 of 10)	CpG	-1004.0	NM_001083808	72296.0	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9250345-2	chr3	9249845	9250845	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177660)	promoter-TSS (NM_177660)	-222.0	NM_177660	229055.0	Mm.103262	NM_177660	ENSMUSG00000069114	Zbtb10	4832414A18|AU021107|RINZF	zinc finger and BTB domain containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61054649-4	chr9	61054165	61055165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37596.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93801990-4	chr1	93801510	93802510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023136)	promoter-TSS (NM_023136)	-76.0	NM_001105667	21915.0	Mm.250332	NM_023136	ENSMUSG00000026281	Dtymk	AU044245|CDC8|D10Ertd203e|TMPK|TYPK|Tmk|mtmk	deoxythymidylate kinase	protein-coding	24.5	114.5	71.5	35.5	62.0	52.0
Merged-chr11-110986281-4	chr11	110985775	110986775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010604, intron 1 of 1)	intron (NM_010604, intron 1 of 1)	-11212.0	NM_001252209	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	59.5	201.5	171.0	64.0	199.5	138.0
Merged-chr8-119816592-2	chr8	119816092	119817092	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 3 of 3)	intron (NM_028071, intron 3 of 3)	23987.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126884872-4	chr7	126884362	126885362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001163775, exon 1 of 16)	5' UTR (NM_001163775, exon 1 of 16)	105.0	NM_001163775	381921.0	Mm.259634	NM_001163774	ENSMUSG00000059981	Taok2	1110033K02Rik|B230344N16|MAP3K17|PSK|PSK1|TAO1|TAO2|mKIAA0881	TAO kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165987141-1	chr2	165986641	165987641	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-5496.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	14.0	85.5	48.0	23.0	101.5	50.0
Merged-chr6-99388843-4	chr6	99388358	99389358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053202, intron 1 of 18)	intron (NM_053202, intron 1 of 18)	46487.0	NM_053202	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	1.5	0.0	0.0	1.5
Merged-chr8-71381514-4	chr8	71381033	71382033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010150, exon 1 of 4)	5' UTR (NM_010150, exon 1 of 4)	419.0	NM_010150	13864.0	Mm.28989	NM_010150	ENSMUSG00000002393	Nr2f6	AV090102|COUP-TF3|EAR2|Erbal2	nuclear receptor subfamily 2, group F, member 6	protein-coding	13.0	20.5	33.5	11.0	22.5	33.5
Merged-chr16-17694957-4	chr16	17694434	17695434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358404, intron 2 of 16)	intron (NM_001358404, intron 2 of 16)	27966.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83363983-2	chr6	83363483	83364483	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_183138, exon 11 of 11)	3' UTR (NM_183138, exon 11 of 11)	14499.0	NM_175277	78653.0	Mm.391470	NM_175277	ENSMUSG00000045160	Bola3	1810056O20Rik	bolA-like 3 (E. coli)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106412401-4	chr8	106411887	106412887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2952.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114302916-4	chr7	114302409	114303409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26793.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	6.5	13.0	14.0	13.5	23.5	11.0
Merged-chr7-66355141-4	chr7	66354645	66355645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 2 of 33)	intron (NM_146191, intron 2 of 33)	26579.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	42.5	169.0	90.0	75.0	131.5	85.0
Merged-chr1-183669864-4	chr1	183669376	183670376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79101.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	3.5	17.0	18.5	1.0	1.5	2.5
Merged-chr7-19750310-4	chr7	19749824	19750824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159724)	promoter-TSS (NM_001159724)	-751.0	NM_001159724	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12960634-4	chr17	12960198	12961198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009338)	promoter-TSS (NM_009338)	27.0	NM_009338	110460.0	Mm.439711	NM_009338	ENSMUSG00000023832	Acat2	AW742799|Tcp-1x|Tcp1-rs1	acetyl-Coenzyme A acetyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59831224-4	chr15	59830718	59831718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-36259.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	22.5	76.0	41.0	28.5	47.0	46.0
Merged-chr10-115816760-4	chr10	115816264	115817264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146010)	promoter-TSS (NM_146010)	-520.0	NM_001168680	216350.0	Mm.22270	NM_146010	ENSMUSG00000034127	Tspan8	C76990|E330007O21Rik|Tm4sf3	tetraspanin 8	protein-coding	9.5	1.0	4.5	0.0	5.5	1.0
Merged-chr11-80142145-4	chr11	80141618	80142618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183275)	promoter-TSS (NM_183275)	35.0	NM_183275	68550.0	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79586984-4	chr3	79586471	79587471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4366.0	NM_001356326	67738.0	Mm.295252	NM_026352	ENSMUSG00000027804	Ppid	4930564J03Rik|CYP-40|Ppidl|Ppif	peptidylprolyl isomerase D (cyclophilin D)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88199254-6	chr8	88198750	88199750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164497)	promoter-TSS (NM_001164497)	37.0	NM_001164498	214627.0	Mm.491211	NM_001164497	ENSMUSG00000036779	Papd5	5730445M16Rik|5830428A09	PAP associated domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-144582489-4	chr7	144581975	144582975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010175)	promoter-TSS (NM_010175)	-39.0	NM_010175	14082.0	Mm.5126	NM_010175	ENSMUSG00000031077	Fadd	Mort1/FADD	Fas (TNFRSF6)-associated via death domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44173085-4	chr16	44172594	44173594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029889)	promoter-TSS (NM_001029889)	-303.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110893724-4	chr9	110893297	110894297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153354, intron 17 of 25)	intron (NR_153354, intron 17 of 25)	13475.0	NM_001146060	235633.0	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	25.5	37.5	72.5	16.5	58.0	54.5
Merged-chr19-4125850-4	chr19	4125341	4126341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025889)	promoter-TSS (NM_025889)	17.0	NM_016666	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3209455-1	chr8	3208955	3209955	+	1000.0	f0_balb.idr	intron (NM_001330056, intron 3 of 21)	intron (NM_001330056, intron 3 of 21)	70162.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0.0	1.5	4.0	0.5	1.5	4.0
Merged-chr1-152800122-4	chr1	152799668	152800668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010877)	promoter-TSS (NM_010877)	15.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-16866011-4	chr12	16865477	16866477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29001.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	36.5	93.5	59.0	30.5	55.0	60.0
Merged-chr11-88044471-3	chr11	88043983	88044983	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2890.0	NM_001078167	110809.0	Mm.391719	NM_173374	ENSMUSG00000018379	Srsf1	1110054N12Rik|5730507C05Rik|6330415C05Rik|AI482334|AW491331|Asf|Sf2|Sfrs1	serine/arginine-rich splicing factor 1	protein-coding	22.5	39.0	21.5	8.0	28.0	17.0
Merged-chr3-14533837-4	chr3	14533335	14534335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028915)	promoter-TSS (NM_028915)	47.0	NM_001163580	71710.0	Mm.257449	NM_028915	ENSMUSG00000027550	Lrrcc1	1200008A14Rik|4932441F23Rik|AI195358|AI447421	leucine rich repeat and coiled-coil domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88227292-4	chr1	88226742	88227742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 1 of 41)	intron (NM_001281466, intron 1 of 41)	222.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-16398-1	chr4	15898	16898	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-3155685.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11603417-1	chr19	11602917	11603917	+	1000.0	f1_balb.idr	intron (NM_026835, intron 1 of 6)	intron (NM_026835, intron 1 of 6)	1387.0	NM_026835	68774.0	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	4.0	20.5	22.0	8.0	3.5	12.5
Merged-chr1-164135500-4	chr1	164134999	164135999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011347, intron 8 of 15)	intron (NM_011347, intron 8 of 15)	-16336.0	NM_007976	14067.0	Mm.12900	NM_007976	ENSMUSG00000026579	F5	AI173222|Cf-5|Cf5	coagulation factor V	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24547036-4	chr7	24546539	24547539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009532, exon 2 of 18)	5' UTR (NM_009532, exon 2 of 18)	340.0	NM_001360170	22594.0	Mm.4347	NM_009532	ENSMUSG00000051768	Xrcc1	Xrcc-1	X-ray repair complementing defective repair in Chinese hamster cells 1	protein-coding	10.5	10.0	22.0	11.5	10.5	22.5
Merged-chr1-13372758-5	chr1	13372256	13373256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302702)	promoter-TSS (NM_001302702)	-327.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97666183-2	chr11	97665683	97666683	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139311, intron 4 of 19)	intron (NM_139311, intron 4 of 19)	2771.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61956802-4	chr11	61956308	61957308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281818)	promoter-TSS (NM_001281818)	45.0	NM_001310526	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25736335-2	chr14	25735835	25736835	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 2 of 3)	(TG)n|Simple_repeat|Simple_repeat	32521.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29324226-2	chr7	29323726	29324726	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081028, exon 22 of 23)	exon (NM_001081028, exon 22 of 23)	20221.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17948139-4	chr10	17947632	17948632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033432)	promoter-TSS (NM_001033432)	-65.0	NM_001033432	380629.0	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-108316275-4	chr13	108315826	108316826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178683)	promoter-TSS (NM_178683)	-11.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	28.5	19.5	35.5	7.0	21.5	14.5
Merged-chr1-165616844-4	chr1	165616345	165617345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	17696.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75085053-4	chr8	75084564	75085564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8554.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	22.0	50.0	40.5	15.5	34.5	19.5
Merged-chr4-121024086-4	chr4	121023585	121024585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6838.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	1.0	16.0	5.0	0.5	0.0	4.5
Merged-chr7-16046183-4	chr7	16045674	16046674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25671.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153501992-8	chr1	153501485	153502485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14325.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26506228-4	chr17	26505721	26506721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013642, exon 4 of 4)	3' UTR (NM_013642, exon 4 of 4)	2251.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36951759-4	chr17	36951260	36952260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029632)	promoter-TSS (NM_029632)	32.0	NM_029632	76497.0	Mm.46176	NM_029632	ENSMUSG00000036398	Ppp1r11	1500041B02Rik|AV117883|Hcgv|Tcte5|Tctex-5|Tctex5	protein phosphatase 1, regulatory (inhibitor) subunit 11	protein-coding	60.5	118.0	127.0	25.5	156.0	138.5
Merged-chr14-57407575-4	chr14	57407080	57408080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9097.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140321611-4	chr5	140321101	140322101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010752)	promoter-TSS (NM_010752)	-21.0	NM_001356585	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-19920475-4	chr11	19919949	19920949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3993.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	13.5	50.0	31.0	20.0	43.0	18.0
Merged-chr3-137918555-4	chr3	137918071	137919071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019920)	promoter-TSS (NM_019920)	16.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	96.0	171.5	134.5	47.0	143.0	139.0
Merged-chr4-3779886-4	chr4	3779388	3780388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	MLT1A0|LTR|ERVL-MaLR	55767.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	2.5	3.0	7.0	5.0	4.5	3.5
Merged-chr3-149085541-2	chr3	149085041	149086041	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130906.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	6.5	10.5	9.0	20.5	14.0	13.0
Merged-chr9-120110348-4	chr9	120109838	120110838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144793)	promoter-TSS (NM_144793)	-61.0	NM_144793	208638.0	Mm.236656	NM_144793	ENSMUSG00000032519	Slc25a38	AV019094|BC010801|appoptosin	solute carrier family 25, member 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-71344872-4	chr10	71344400	71345400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134007)	promoter-TSS (NM_134007)	-51.0	NM_134007	52637.0	Mm.254114	NM_134007	ENSMUSG00000037710	Cisd1	AU043990|AW743335|D10Ertd214e|Zcd1|mitoNEET	CDGSH iron sulfur domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64001776-4	chr7	64001272	64002272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62857.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97415460-4	chr11	97414934	97415934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-34726.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7341313-2	chr19	7340813	7341813	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007928, exon 1 of 18)	5' UTR (NM_007928, exon 1 of 18)	547.0	NM_001080389	13728.0	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-42449303-3	chr17	42448789	42449789	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355270, intron 2 of 2)	intron (NM_001355270, intron 2 of 2)	132689.0	NM_001355270	627626.0	Mm.390999	NM_028474	ENSMUSG00000042256	Ptchd4	3110082D06Rik|Gm321	patched domain containing 4	protein-coding	35.0	43.0	47.0	1.5	0.0	3.0
Merged-chr17-64590682-4	chr17	64590172	64591172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10977.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-142071072-4	chr4	142070576	142071576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-13222.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148160129-4	chr4	148159606	148160606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176848)	promoter-TSS (NM_176848)	-12.0	NR_104374	230903.0	Mm.220327	NM_173401	ENSMUSG00000029001	Fbxo44	5730411K09|AV001623|FBG3|FBX30|Fbx6a|Fbxo6a	F-box protein 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79962450-4	chr11	79961941	79962941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144826)	promoter-TSS (NM_144826)	-54.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	11.0	48.0	36.0	31.0	41.5	24.5
Merged-chr1-135146885-6	chr1	135146424	135147424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026823)	promoter-TSS (NM_026823)	90.0	NM_026823	68724.0	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-125454682-4	chr1	125454204	125455204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18977.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4594878-4	chr11	4594378	4595378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028860)	promoter-TSS (NM_028860)	-63.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26119313-4	chr8	26118812	26119812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207659)	promoter-TSS (NM_207659)	-56.0	NM_001357292	77733.0	Mm.291906	NM_029965	ENSMUSG00000013878	Rnf170	6720407G21Rik|AI481227	ring finger protein 170	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136311374-2	chr4	136310874	136311874	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355182)	promoter-TSS (NM_001355182)	-224.0	NM_001355182	74326.0	Mm.31051	NM_028871	ENSMUSG00000066037	Hnrnpr	2610003J05Rik|2610528B01Rik|Hnrpr	heterogeneous nuclear ribonucleoprotein R	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71633000-4	chr6	71632471	71633471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173001)	promoter-TSS (NM_173001)	-54.0	NM_001362200	104263.0	Mm.260479	NM_173001	ENSMUSG00000053470	Kdm3a	1700105C21Rik|C230043E16Rik|JHDM2a|Jmjd1|Jmjd1a|KDM2A|TGSA|Tsga	lysine (K)-specific demethylase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44268204-4	chr9	44267717	44268717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163743)	promoter-TSS (NM_001163743)	-30.0	NM_001163743	270151.0	Mm.3957	NM_178420	ENSMUSG00000032109	Nlrx1	BC034204|NOD9	NLR family member X1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-37748169-4	chr3	37747646	37748646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23786.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32434294-4	chr16	32433799	32434799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163160, intron 1 of 8)	intron (NM_001163160, intron 1 of 8)	3069.0	NM_001163160	13026.0	Mm.98775	NM_009981	ENSMUSG00000005615	Pcyt1a	CTalpha|Cctalpha|Ctpct|Cttalpha	phosphate cytidylyltransferase 1, choline, alpha isoform	protein-coding	5.0	15.0	36.5	6.5	15.5	21.5
Merged-chr17-73027300-4	chr17	73026800	73027800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80685.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	76.5	118.0	80.0	80.5	104.5	91.0
Merged-chr13-113601303-4	chr13	113600804	113601804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	17260.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-138256640-4	chr2	138256141	138257141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025431)	promoter-TSS (NM_001025431)	57.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-68214561-2	chr2	68214061	68215061	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 17 of 17)	intron (NM_016866, intron 17 of 17)	109889.0	NM_020283	26877.0	Mm.226435	NM_020283	ENSMUSG00000034780	B3galt1	beta3Gal-T1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128143689-4	chr6	128143227	128144227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175414)	promoter-TSS (NM_175414)	-149.0	NM_001356301	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-39039950-4	chr12	39039440	39040440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	256229.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91475926-3	chr16	91475435	91476435	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR16|LTR|ERVK	-9280.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	3.0	0.5	4.0	4.5	9.5	23.5
Merged-chr11-83753741-4	chr11	83753230	83754230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145432)	promoter-TSS (NM_145432)	93.0	NM_145432	217026.0	Mm.117874	NM_145432	ENSMUSG00000000976	Heatr6	2700008B19Rik|BB135312|BB249351	HEAT repeat containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-127254146-4	chr6	127253643	127254643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53824.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38950038-4	chr6	38949544	38950544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 2 of 12)	intron (NM_011539, intron 2 of 12)	31058.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-17253012-3	chr19	17252503	17253503	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86502.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	42.0	153.0	99.0	7.0	8.0	5.5
Merged-chr11-78345975-4	chr11	78345475	78346475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313987)	promoter-TSS (NM_001313987)	391.0	NM_001313988	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112589558-2	chr12	112589058	112590058	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198411, intron 1 of 22)	intron (NM_198411, intron 1 of 22)	774.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-85069455-4	chr6	85068950	85069950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177077)	promoter-TSS (NM_177077)	63.0	NM_177077	75914.0	Mm.159621	NM_177077	ENSMUSG00000033769	Exoc6b	4930569O18Rik|G430127E12Rik|Sec15b|Sec15l2|mKIAA0919	exocyst complex component 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128091655-4	chr10	128091192	128092192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1091.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86875800-1	chr4	86875300	86876300	+	1000.0	f1_c57bl6.idr	intron (NM_001290543, intron 1 of 5)	intron (NM_001290543, intron 1 of 5)	1386.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	4.5	1.5	1.0	0.0	4.0	2.0
Merged-chr4-130789938-4	chr4	130789425	130790425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2612.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65580227-4	chr9	65579722	65580722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153119)	promoter-TSS (NM_153119)	-135.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31336568-4	chr14	31336041	31337041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360187)	promoter-TSS (NM_001360187)	-97.0	NM_001360187	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60843945-4	chr18	60843443	60844443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011552, intron 2 of 24)	intron (NM_011552, intron 2 of 24)	5021.0	NM_011552	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	25.0	66.5	42.0	22.0	65.5	39.0
Merged-chr7-105811138-4	chr7	105810640	105811640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025301)	promoter-TSS (NM_025301)	-53.0	NM_025301	27397.0	Mm.44225	NM_025301	ENSMUSG00000030879	Mrpl17	MRP-L26|Rpml26	mitochondrial ribosomal protein L17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34931241-4	chr17	34930741	34931741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010893)	promoter-TSS (NM_010893)	-12.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18877125-4	chr16	18876614	18877614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010922)	promoter-TSS (NM_010922)	364.0	NM_010435	15260.0	Mm.15694	NM_010435	ENSMUSG00000022702	Hira	AA138857|D16Ertd95e|Gm15797|N28177|Tuple1	histone cell cycle regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50857132-2	chr15	50856632	50857632	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_032000, intron 1 of 5)	intron (NM_032000, intron 1 of 5)	31917.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	1.0	6.0	3.5	1.0	2.0	2.0
Merged-chr7-73595389-4	chr7	73594903	73595903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37008.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	4.0	26.5	12.0	12.0	24.0	12.5
Merged-chr11-75173640-4	chr11	75173137	75174137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029546)	promoter-TSS (NR_029546)	-45.0	NR_029546	387150.0		NR_029546	ENSMUSG00000065537	Mir132	Mirn132|mir-132|mmu-mir-132	microRNA 132	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104534972-4	chr8	104534441	104535441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144931)	promoter-TSS (NM_144931)	241.0	NM_001301164	12354.0	Mm.129265	NM_053070	ENSMUSG00000031883	Car7	AV343731|Ca7	carbonic anhydrase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20185307-4	chr13	20184789	20185789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	94782.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	16.5	50.5	32.5	9.5	34.5	29.0
Merged-chr7-90146510-4	chr7	90146008	90147008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	16295.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97814403-4	chr6	97813903	97814903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	7345.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-36447151-4	chr3	36446649	36447649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28375.0	NR_105976	102466786.0		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-81719901-4	chr12	81719380	81720380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001174107, exon 11 of 11)	3' UTR (NM_001174107, exon 11 of 11)	61290.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21034211-4	chr11	21033663	21034663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57161.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-18610061-4	chr12	18609555	18610555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	95545.0	NM_001201330	236366.0	Mm.352227	NM_001033157	ENSMUSG00000073197	5730507C01Rik	-	RIKEN cDNA 5730507C01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31209602-4	chr6	31209117	31210117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	intron (NR_110469, intron 1 of 3)	8857.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-102896001-4	chr13	102895496	102896496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	135741.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-13361401-4	chr14	13360917	13361917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028052, intron 2 of 5)	intron (NM_028052, intron 2 of 5)	76637.0	NM_028052	72003.0	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70781316-4	chr14	70780812	70781812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6931.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	84.5	175.5	130.0	39.0	203.5	147.0
Merged-chr19-53284622-4	chr19	53284115	53285115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25891.0	NM_001008542	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	3.0	1.0	9.5	1.0	4.0	2.5
Merged-chr14-18234112-4	chr14	18233614	18234614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011584, intron 1 of 7)	intron (NM_011584, intron 1 of 7)	4992.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10204756-4	chr19	10204293	10205293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271615)	promoter-TSS (NM_001271615)	591.0	NM_026919	69038.0	Mm.375100	NM_026919	ENSMUSG00000036372	Tmem258	1810006K21Rik	transmembrane protein 258	protein-coding	44.0	122.5	68.0	55.0	130.0	67.5
Merged-chr6-31115075-4	chr6	31114567	31115567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-51974.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88141550-2	chr3	88141050	88142050	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133665)	promoter-TSS (NM_133665)	-822.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165987453-4	chr2	165986945	165987945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5192.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	14.0	85.5	48.0	20.5	101.5	49.0
Merged-chr14-55788886-4	chr14	55788404	55789404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019955)	promoter-TSS (NM_019955)	-47.0	NM_001164108	56532.0	Mm.46612	NM_019955	ENSMUSG00000022221	Ripk3	2610528K09Rik|AW107945|Rip3	receptor-interacting serine-threonine kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-48717996-4	chr2	48717501	48718501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96108.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13105593-4	chr8	13105085	13106085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146207)	promoter-TSS (NM_146207)	-136.0	NM_146207	99375.0	Mm.212861	NM_146207	ENSMUSG00000031446	Cul4a	2810470J21Rik|AW495282	cullin 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71002599-4	chr17	71002089	71003089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026064)	promoter-TSS (NM_026064)	-56.0	NM_026064	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	25.0	56.0	43.5	14.5	41.0	27.5
Merged-chr4-107577182-2	chr4	107576682	107577682	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_147221, intron 4 of 10)	intron (NM_147221, intron 4 of 10)	106407.0	NR_151717	56296.0	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75782161-4	chr7	75781682	75782682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66156.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	7.0	12.5	4.5	15.0	7.5	3.0
Merged-chr12-8208239-4	chr12	8207746	8208746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167767, intron 1 of 5)	CpG	119.0	NM_001167767	68832.0	Mm.25608	NM_172401	ENSMUSG00000037669	Ldah	1110057K04Rik|mLDAH	lipid droplet associated hydrolase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118491535-4	chr7	118491052	118492052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033380, exon 1 of 1)	5' UTR (NM_001033380, exon 1 of 1)	423.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	50.5	143.0	176.0	79.5	156.5	142.5
Merged-chr13-23751503-4	chr13	23751002	23752002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178203)	promoter-TSS (NM_178203)	414.0	NM_175660	319172.0	Mm.423402	NM_175660	ENSMUSG00000061615	Hist1h2ab	H2A.1|H2a-53	histone cluster 1, H2ab	protein-coding	95.0	233.5	113.0	40.0	135.0	73.5
Merged-chr8-70700661-4	chr8	70700164	70701164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010592)	TTS (NM_010592)	2925.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	2.0	0.0	0.0	5.0	0.0	0.0
Merged-chr7-6150921-2	chr7	6150421	6151421	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013012, intron 1 of 2)	intron (NM_001013012, intron 1 of 2)	5050.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114295744-4	chr6	114295234	114296234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178703, intron 1 of 15)	intron (NM_178703, intron 1 of 15)	13099.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77417839-2	chr10	77417339	77418339	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027377)	promoter-TSS (NR_027377)	434.0	NM_130895	110532.0	Mm.276815	NM_130895	ENSMUSG00000020262	Adarb1	1700057H01Rik|AW124433|AW558573|Adar2|BB220382|D10Bwg0447e|Red1	adenosine deaminase, RNA-specific, B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79639255-4	chr8	79638755	79639755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256033)	promoter-TSS (NM_001256033)	-421.0	NM_001256033	73945.0	Mm.34348	NM_001081164	ENSMUSG00000036990	Otud4	4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046	OTU domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121474152-4	chr10	121473652	121474652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	2098.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	21.5	71.5	34.0	11.5	63.0	38.5
Merged-chr12-3573863-2	chr12	3573363	3574363	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007886, intron 1 of 18)	intron (NM_007886, intron 1 of 18)	879.0	NM_007886	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164917752-2	chr2	164917252	164918252	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-6002.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	0.0	0.0	3.5	9.0	0.0	0.0
Merged-chr4-59009333-4	chr4	59008832	59009832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033165, intron 1 of 3)	intron (NM_001033165, intron 1 of 3)	6139.0	NM_001033165	72429.0	Mm.317801	NM_001033165	ENSMUSG00000070972	Dnajc25	2010109C08Rik|2010203O07Rik	DnaJ heat shock protein family (Hsp40) member C25	protein-coding	0.0	0.5	7.0	13.0	5.5	4.5
Merged-chr18-60984783-2	chr18	60984283	60985283	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009792, exon 7 of 7)	3' UTR (NM_009792, exon 7 of 7)	21229.0	NM_001286809	12322.0	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-136321901-3	chr7	136321411	136322411	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27504.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69425076-4	chr12	69424584	69425584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50466.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	4.0	25.5	10.5	15.0	70.5	47.5
Merged-chr17-25773726-4	chr17	25773234	25774234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026238)	promoter-TSS (NM_026238)	-42.0	NM_026238	67563.0	Mm.24201	NM_026238	ENSMUSG00000002280	Narfl	9030612I22Rik|AI504405|PRN	nuclear prelamin A recognition factor-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72544545-6	chr6	72544037	72545037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271415)	promoter-TSS (NM_001271415)	0.0	NM_001271415	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-65807150-4	chr11	65806673	65807673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026107)	promoter-TSS (NM_026107)	-2.0	NM_001302374	52712.0	Mm.340052	NM_026107	ENSMUSG00000018347	Zkscan6	1700128E15Rik|D11Ertd714e|KOX11|Zfp535|Znf18	zinc finger with KRAB and SCAN domains 6	protein-coding	28.5	90.0	75.0	29.0	95.0	69.0
Merged-chr5-139197181-4	chr5	139196674	139197674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3463.0	NM_001256115	77053.0	Mm.210845	NM_024451	ENSMUSG00000036817	Sun1	4632417G13Rik|5730434D03Rik|Unc84a|mKIAA0810	Sad1 and UNC84 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87533233-4	chr6	87532706	87533706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286610)	promoter-TSS (NM_001286610)	53.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	32.5	99.0	37.5	38.5	81.0	43.0
Merged-chr17-45552239-4	chr17	45551728	45552728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2551.0	NM_001013749	210573.0	Mm.329064	NM_001013749	ENSMUSG00000096847	Tmem151b	Gm323	transmembrane protein 151B	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr13-52042062-4	chr13	52041559	52042559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54682.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108338554-2	chr9	108338054	108339054	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001329528)	promoter-TSS (NM_001329528)	-526.0	NM_001329528	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85473540-4	chr12	85473037	85474037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010234)	promoter-TSS (NM_010234)	-353.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84232210-7	chr15	84231656	84232656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133167, exon 1 of 13)	exon (NM_133167, exon 1 of 13)	113.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	4.0	7.0	3.0	0.0	5.0	3.5
Merged-chr7-126144518-4	chr7	126144027	126145027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 8 of 23)	MTD|LTR|ERVL-MaLR	55974.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85280392-4	chr12	85279901	85280901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025421)	promoter-TSS (NM_025421)	34.0	NM_025421	66204.0	Mm.311985	NM_025421	ENSMUSG00000008822	Acyp1	1110039O14Rik|AI325944	acylphosphatase 1, erythrocyte (common) type	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95152783-4	chr10	95152306	95153306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6981.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43973681-4	chr4	43973183	43974183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027450, intron 4 of 4)	intron (NM_027450, intron 4 of 4)	-9821.0	NM_001002787	442829.0	Mm.348215	NM_001002787	ENSMUSG00000070999	Ccin	4933417A14Rik	calicin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57655912-4	chr9	57655388	57656388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2257.0	NM_001304761	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50491679-4	chr17	50491178	50492178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER105|DNA|DNA	-17869.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53826001-4	chr4	53825502	53826502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028053)	promoter-TSS (NM_028053)	-43.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109666872-4	chr4	109666351	109667351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301368)	promoter-TSS (NM_001301368)	-95.0	NM_001301368	12580.0	Mm.1912	NM_007671	ENSMUSG00000028551	Cdkn2c	C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c	cyclin dependent kinase inhibitor 2C	protein-coding	40.5	70.0	56.0	20.0	58.5	35.0
Merged-chr4-62360528-4	chr4	62360056	62361056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175090)	promoter-TSS (NM_175090)	40.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84039400-4	chr3	84038918	84039918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172681, intron 1 of 34)	CpG	743.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144600032-4	chr2	144599510	144600510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025314)	promoter-TSS (NM_025314)	57.0	NM_025314	66044.0	Mm.28109	NM_025314	ENSMUSG00000027430	Dtd1	0610006H08Rik|DTD|DUE-B|Hars2	D-tyrosyl-tRNA deacylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45250547-2	chr9	45250047	45251047	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001198971)	TTS (NM_001198971)	16160.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-55231163-2	chr18	55230663	55231663	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-238572.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31159479-2	chr14	31158979	31159979	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138672, intron 16 of 68)	intron (NM_138672, intron 16 of 68)	9162.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104057312-3	chr9	104056803	104057803	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025692, intron 3 of 11)	intron (NM_025692, intron 3 of 11)	5818.0	NM_025692	66663.0	Mm.224935	NM_025692	ENSMUSG00000032557	Uba5	5730525G14Rik|AW240750|Ube1dc1	ubiquitin-like modifier activating enzyme 5	protein-coding	5.5	1.0	2.5	3.5	5.5	11.5
Merged-chr6-113333852-2	chr6	113333352	113334352	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133926)	TTS (NM_133926)	6876.0	NM_010957	18294.0	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50839749-2	chr15	50839249	50840249	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 2 of 5)	(CA)n|Simple_repeat|Simple_repeat	49300.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	2.0	22.5	21.0	2.0	25.0	13.5
Merged-chr10-81134449-4	chr10	81133940	81134940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1831.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108856123-4	chr3	108855633	108856633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177091, exon 13 of 13)	3' UTR (NM_177091, exon 13 of 13)	-15631.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	57.0	80.0	73.0	11.5	32.0	22.5
Merged-chr5-143490169-4	chr5	143489678	143490678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 9 of 14)	intron (NM_144915, intron 9 of 14)	25685.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110778012-4	chr12	110777519	110778519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347428, intron 1 of 2)	intron (NM_001347428, intron 1 of 2)	40087.0	NM_001347428	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-106998795-4	chr13	106998293	106999293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008442, intron 1 of 21)	intron (NM_008442, intron 1 of 21)	23321.0	NM_001145779	16563.0	Mm.355686	NM_008442	ENSMUSG00000021693	Kif2a	C530030B14Rik|Kif2|Kns2|M-kinesin	kinesin family member 2A	protein-coding	4.0	6.0	2.5	1.0	23.0	8.0
Merged-chr12-110979121-4	chr12	110978596	110979596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361917)	promoter-TSS (NM_001361917)	-56.0	NM_001361916	74251.0	Mm.250989	NM_175207	ENSMUSG00000037904	Ankrd9	2500003O20Rik	ankyrin repeat domain 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81021609-4	chr15	81021105	81022105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 6 of 13)	intron (NM_001082536, intron 6 of 13)	43840.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0.0	0.0	6.0	0.0	0.0	2.5
Merged-chr15-76607658-4	chr15	76607171	76608171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164173)	promoter-TSS (NM_001164173)	-80.0	NM_001164173	94230.0	Mm.45141	NM_053193	ENSMUSG00000034022	Cpsf1	CPSF160	cleavage and polyadenylation specific factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119497218-2	chr8	119496718	119497718	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001009950, intron 3 of 10)	intron (NM_001009950, intron 3 of 10)	4480.0	NM_001009950	234788.0	Mm.302096	NM_001009950	ENSMUSG00000034224	Slc38a8	Gm587	solute carrier family 38, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-139074871-4	chr3	139074346	139075346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 1 of 13)	CpG	355.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	28.0	112.0	80.5	27.0	73.5	69.5
Merged-chr11-121743362-4	chr11	121742862	121743862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40935.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	4.0	30.5	29.5	10.0	48.5	33.0
Merged-chr7-143832511-4	chr7	143832014	143833014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007856, intron 2 of 8)	intron (NM_007856, intron 2 of 8)	9347.0	NM_007856	13360.0	Mm.249342	NM_007856	ENSMUSG00000058454	Dhcr7	AA409147	7-dehydrocholesterol reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116376199-4	chr9	116375708	116376708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	187028.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46865899-2	chr19	46865399	46866399	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001102471, intron 4 of 6)	intron (NM_001102471, intron 4 of 6)	96452.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75728820-2	chr14	75728320	75729320	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177381, intron 13 of 22)	intron (NM_177381, intron 13 of 22)	25673.0	NM_177381	338337.0	Mm.86507	NM_177381	ENSMUSG00000034893	Cog3	E430004N23	component of oligomeric golgi complex 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4474626-4	chr16	4474092	4475092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	48483.0	NM_001347162	106393.0	Mm.35811	NM_175347	ENSMUSG00000022519	Srl	9830004M20Rik|AW108387|sar	sarcalumenin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68277853-4	chr10	68277360	68278360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	866.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	62.5	203.5	72.0	52.0	168.5	126.5
Merged-chr17-83705804-4	chr17	83705285	83706285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001171053)	promoter-TSS (NM_001171053)	-378.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-10873095-4	chr15	10872607	10873607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44056.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-76442324-4	chr10	76441835	76442835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008787, intron 1 of 41)	CpG	577.0	NM_008787	18541.0	Mm.251794	NM_008787	ENSMUSG00000001151	Pcnt	AW476095|C86676|KEN|Pcnt2|kendrin|m239Asp|m275Asp	pericentrin (kendrin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71693413-4	chr17	71692908	71693908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177087, intron 6 of 19)	intron (NM_177087, intron 6 of 19)	20147.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155613562-4	chr2	155613059	155614059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001085378, exon 4 of 42)	exon (NM_001085378, exon 4 of 42)	2316.0	NM_001085378	668940.0	Mm.469980	NM_001085378	ENSMUSG00000074652	Myh7b	Myh14	myosin, heavy chain 7B, cardiac muscle, beta	protein-coding	0.0	3.5	1.5	0.0	3.0	3.5
Merged-chr8-83715160-4	chr8	83714692	83715692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197982)	promoter-TSS (NM_197982)	15.0	NM_197982	68278.0	Mm.28222	NM_197982	ENSMUSG00000005481	Ddx39	2610307C23Rik|BAT1|DDXL|Ddx39a|URH49	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	protein-coding	0.0	0.0	1.5	0.5	0.0	0.5
Merged-chr6-89415985-4	chr6	89415456	89416456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 5 of 6)	L2b|LINE|L2	-53343.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-81781291-4	chr12	81780770	81781770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177395)	promoter-TSS (NM_177395)	-100.0	NM_001174107	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25356364-4	chr2	25355864	25356864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031843)	promoter-TSS (NM_031843)	-32.0	NM_031843	83768.0	Mm.21440	NM_031843	ENSMUSG00000026958	Dpp7	DPPII|Dpp2|QPP	dipeptidylpeptidase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102638269-4	chr2	102637752	102638752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173749, intron 8 of 10)	intron (NM_173749, intron 8 of 10)	-20437.0	NM_001077514	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	3.5	9.5	9.0	0.0	7.0	3.0
Merged-chr16-11034587-4	chr16	11034087	11035087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25689.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165751364-4	chr1	165750860	165751860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12398.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-33248761-4	chr14	33248273	33249273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	31950.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81070013-4	chr10	81069513	81070513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022653)	promoter-TSS (NM_022653)	-70.0	NM_022653	50492.0	Mm.26995	NM_022653	ENSMUSG00000004929	Thop1	AI131655|AI327041|EP24.15	thimet oligopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118861556-2	chr2	118861056	118862056	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019826)	promoter-TSS (NM_019826)	-444.0	NM_019826	56357.0	Mm.6635	NM_019826	ENSMUSG00000027332	Ivd	1300016K07Rik|6720455E18Rik|AI463340	isovaleryl coenzyme A dehydrogenase	protein-coding	26.5	76.0	60.5	17.5	70.5	51.5
Merged-chr4-141958357-2	chr4	141957857	141958857	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 9 of 31)	intron (NM_177868, intron 9 of 31)	-24635.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3882013-2	chr19	3881513	3882513	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271496, intron 3 of 11)	intron (NM_001271496, intron 3 of 11)	23217.0	NM_016921	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30169820-4	chr7	30169340	30170340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357557)	promoter-TSS (NM_001357557)	-82.0	NM_001033540	330503.0	Mm.434058	NM_001033540	ENSMUSG00000066647	Gm5113	B430201F14|EG330503	predicted gene 5113	protein-coding	72.5	116.5	94.5	40.5	94.0	65.5
Merged-chr5-23978752-3	chr5	23978256	23979256	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053090, intron 10 of 10)	intron (NM_053090, intron 10 of 10)	51556.0	NM_001310471	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	2.0	2.0	13.0	11.0	15.5	14.0
Merged-chr6-100410247-2	chr6	100409747	100410747	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-117153.0	NR_040525	73395.0	Mm.69413	NR_040525	ENSMUSG00000101553	1700049E22Rik	-	RIKEN cDNA 1700049E22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155761141-4	chr4	155760626	155761626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_179203)	promoter-TSS (NM_179203)	-28.0	NM_179203	108888.0	Mm.241152	NM_179203	ENSMUSG00000029036	Atad3a	2400004H09Rik|Atad3|Tob3|mKIAA1273	ATPase family, AAA domain containing 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94601842-4	chr8	94601349	94602349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026274)	promoter-TSS (NM_026274)	-92.0	NM_001359093	67610.0	Mm.109074	NM_026274	ENSMUSG00000050079	Rspry1	4930470D19Rik|AI608258	ring finger and SPRY domain containing 1	protein-coding	14.0	89.5	44.5	27.0	73.0	83.0
Merged-chr5-76589004-1	chr5	76588504	76589504	+	1000.0	f0_c57.idr	Intergenic	CpG	-2710.0	NM_199032	381644.0	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32277493-2	chr19	32276993	32277993	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168525, intron 2 of 9)	intron (NM_001168525, intron 2 of 9)	-66480.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83660818-2	chr11	83660318	83661318	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1766.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-124312650-4	chr9	124312144	124313144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243117)	promoter-TSS (NM_001243117)	50.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-3583448-4	chr15	3582926	3583926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010284)	promoter-TSS (NM_010284)	-74.0	NM_010284	14600.0	Mm.3986	NM_010284	ENSMUSG00000055737	Ghr	GHBP|GHR/BP	growth hormone receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54468855-4	chr13	54468368	54469368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028597)	promoter-TSS (NM_028597)	-28.0	NM_028597	73666.0	Mm.292487	NM_028597	ENSMUSG00000025872	Thoc3	2410044K02Rik|AL033344	THO complex 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70042788-4	chr8	70042287	70043287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167939)	promoter-TSS (NM_001167939)	-26.0	NM_027481	70616.0	Mm.17665	NM_027481	ENSMUSG00000011306	Sugp1	5730496N02Rik|Sf4	SURP and G patch domain containing 1	protein-coding	0.0	0.0	0.5	0.0	0.0	1.5
Merged-chr9-106887234-4	chr9	106886746	106887746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175402)	promoter-TSS (NM_175402)	-246.0	NM_175402	109095.0	Mm.431589	NM_175402	ENSMUSG00000074102	Rbm15b	1810017N16Rik	RNA binding motif protein 15B	protein-coding	10.5	32.0	30.0	16.0	75.5	27.5
Merged-chr17-47766805-4	chr17	47766305	47767305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-18939.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	50.5	141.5	100.0	44.5	113.0	93.0
Merged-chr4-15945385-4	chr4	15944858	15945858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026172, exon 1 of 10)	5' UTR (NM_026172, exon 1 of 10)	149.0	NM_026172	67460.0	Mm.393293	NM_026172	ENSMUSG00000028223	Decr1	1200012F07Rik|Decr|Nadph	2,4-dienoyl CoA reductase 1, mitochondrial	protein-coding	3.5	15.5	1.5	3.5	3.5	2.0
Merged-chr8-71382088-4	chr8	71381580	71382580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010150)	promoter-TSS (NM_010150)	-128.0	NM_010150	13864.0	Mm.28989	NM_010150	ENSMUSG00000002393	Nr2f6	AV090102|COUP-TF3|EAR2|Erbal2	nuclear receptor subfamily 2, group F, member 6	protein-coding	5.0	10.0	7.5	5.5	2.5	8.5
Merged-chr11-84818837-4	chr11	84818331	84819331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145433, intron 1 of 4)	CpG	684.0	NM_145433	217038.0	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik	mitochondrial rRNA methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19201509-4	chr3	19201010	19202010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356295, intron 2 of 7)	RSINE1|SINE|B4	13215.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-26442806-4	chr14	26442236	26443236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347494, intron 10 of 19)	intron (NM_001347494, intron 10 of 19)	85189.0	NR_038005	71106.0	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87975646-3	chr17	87975172	87976172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_010830, intron 1 of 9)	CpG	622.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	0.0	4.5	4.0	1.0	4.5	0.5
Merged-chr4-143212660-4	chr4	143212141	143213141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081355)	promoter-TSS (NM_001081355)	68.0	NM_001081355	110593.0	Mm.332020	NM_001081355	ENSMUSG00000057637	Prdm2	4833427P12Rik|E330024L24Rik|Gm1033|Gm19732|KMT8|Riz|Riz1|Znfpr1c1	PR domain containing 2, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95559462-4	chr9	95558961	95559961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198414)	promoter-TSS (NM_198414)	-356.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40522658-4	chr12	40522171	40523171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	76618.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-8080304-4	chr14	8079815	8080815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348727)	promoter-TSS (NM_001348727)	2.0	NM_025938	67053.0	Mm.210048	NM_025938	ENSMUSG00000023156	Rpp14	2610511E03Rik|AA682089	ribonuclease P 14 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-56713162-2	chr6	56712662	56713662	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-1743.0	NM_030235	78937.0	Mm.105343	NM_030235	ENSMUSG00000029787	Avl9	5830411G16Rik|D730049P16Rik|mKIAA0241	AVL9 cell migration associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-193833489-4	chr1	193832987	193833987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-325957.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125509971-3	chr6	125509455	125510455	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-15195.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	6.5	8.5	12.5	1.0	2.5	0.0
Merged-chr7-25747157-2	chr7	25746657	25747657	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178089, intron 3 of 7)	PB1D9|SINE|Alu	7602.0	NM_144922	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32727577-4	chr2	32727099	32728099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252547)	promoter-TSS (NM_001252547)	-90.0	NM_001252547	27387.0	Mm.9593	NM_013781	ENSMUSG00000059013	Sh2d3c	Chat|Nsp3|Shep1	SH2 domain containing 3C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-71731167-4	chr1	71730665	71731665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77830.0	NR_040308	100042814.0	Mm.405775	NR_040308	ENSMUSG00000073652	Apol7d	Gm15456	apolipoprotein L 7d	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-84129588-4	chr11	84129053	84130053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172562)	promoter-TSS (NM_172562)	15.0	NM_172562	217031.0	Mm.45159	NM_172562	ENSMUSG00000018651	Tada2a	AV319371|D030022J10Rik|Tada2l	transcriptional adaptor 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27056384-4	chr17	27055865	27056865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080553)	promoter-TSS (NM_080553)	-939.0	NM_080553	16440.0	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	3.0	23.0	9.0	8.5	17.5	13.5
Merged-chr10-17722415-4	chr10	17721902	17722902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010828)	promoter-TSS (NM_010828)	-826.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160368051-4	chr2	160367548	160368548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010658)	promoter-TSS (NM_010658)	-983.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-178317248-2	chr1	178316748	178317748	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-1905.0	NM_025511	66359.0	Mm.489720	NM_025511	ENSMUSG00000026500	Cox20	2310005N03Rik|Fam36a	COX20 Cox2 chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66561074-4	chr15	66560567	66561567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172514)	promoter-TSS (NM_172514)	-21.0	NM_172514	213068.0	Mm.132299	NM_172514	ENSMUSG00000036944	Tmem71	AI661017|E430024D12	transmembrane protein 71	protein-coding	277.5	441.5	349.0	188.0	512.0	300.0
Merged-chr16-50445219-4	chr16	50444715	50445715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-12749.0	NM_001347240	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64122231-4	chr1	64121719	64122719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033563)	promoter-TSS (NM_033563)	-830.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-37955014-4	chr18	37954492	37955492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153793)	promoter-TSS (NM_153793)	-4.0	NM_010411	15183.0	Mm.20521	NM_010411	ENSMUSG00000024454	Hdac3	AW537363	histone deacetylase 3	protein-coding	8.0	5.5	5.0	6.5	3.5	12.0
Merged-chr1-78537718-4	chr1	78537212	78538212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026713, intron 6 of 6)	intron (NM_026713, intron 6 of 6)	26652.0	NM_026713	68393.0	Mm.41325	NM_026713	ENSMUSG00000012187	Mogat1	0610030A14Rik|1110064N14Rik|Dgat2l|Dgat2l1|MGAT1|WI1-2612I11.1|mDC2	monoacylglycerol O-acyltransferase 1	protein-coding	20.5	18.5	19.5	10.0	14.5	30.5
Merged-chr15-41789578-4	chr15	41789016	41790016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130885)	promoter-TSS (NM_130885)	1.0	NM_130885	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-14880535-4	chr3	14880045	14881045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5724.0	NM_001357334	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	17.0	7.5	9.5	28.0	11.0	6.0
Merged-chr17-35139822-1	chr17	35139322	35140322	+	1000.0	f1_balb.idr	intron (NM_001252469, intron 5 of 23)	B1_Mur4|SINE|Alu	4108.0	NM_001252469	224727.0	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr9-107982823-4	chr9	107982310	107983310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023738, intron 21 of 23)	intron (NM_023738, intron 21 of 23)	3106.0	NM_026597	68176.0	Mm.76166	NM_026597	ENSMUSG00000042106	Fam212a	6230427J02Rik|Inka1	family with sequence similarity 212, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-65450867-4	chr16	65450361	65451361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69768.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-15987370-4	chr4	15986867	15987867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013752, intron 13 of 15)	Lx9|LINE|L1	26471.0	NM_001355615	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52755124-4	chr3	52754594	52755594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038079, intron 1 of 3)	MIR|SINE|MIR	15370.0	NR_038079	329639.0	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	5.5	17.0	15.5	8.0	10.5	3.0
Merged-chr9-118867225-2	chr9	118866718	118867718	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 9 of 13)	MIR3|SINE|MIR	-59318.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	12.5	43.0	23.5	5.5	35.0	23.0
Merged-chr13-37963589-4	chr13	37963080	37964080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30628.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	0.0	3.5	9.0	2.5	7.5	22.0
Merged-chr10-77978572-4	chr10	77978098	77979098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026431)	promoter-TSS (NM_026431)	-52.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-101076668-4	chr9	101076175	101077175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001100451, intron 1 of 1)	intron (NM_001100451, intron 1 of 1)	1913.0	NM_001100451	77853.0	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	MSL complex subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-57889819-4	chr14	57889314	57890314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029492, intron 1 of 12)	CpG	522.0	NM_029492	75965.0	Mm.29044	NM_029492	ENSMUSG00000021969	Zdhhc20	4930542A17Rik|5033406L14Rik|AI448102|B230110O18Rik|HK11	zinc finger, DHHC domain containing 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-22847830-4	chr14	22847319	22848319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 6 of 6)	intron (NM_028275, intron 6 of 6)	246752.0	NR_033550	791307.0	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	-	predicted gene 10248	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16874353-4	chr7	16873850	16874850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081655)	promoter-TSS (NM_001081655)	536.0	NR_152128	320950.0	Mm.420078	NR_152128	ENSMUSG00000097842	9330104G04Rik	-	RIKEN cDNA 9330104G04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-29986210-4	chr13	29985693	29986693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010093)	promoter-TSS (NM_010093)	-130.0	NM_010093	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43234827-1	chr1	43234327	43235327	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-38066.0	NM_001289533	14200.0	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137858138-4	chr5	137857639	137858639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133209)	promoter-TSS (NM_133209)	-90.0	NM_133209	170741.0	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4032545-4	chr18	4032048	4033048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-133284.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54883322-4	chr14	54882835	54883835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007537)	promoter-TSS (NM_007537)	-90.0	NM_007537	12050.0	Mm.6967	NM_007537	ENSMUSG00000089682	Bcl2l2	AW048834|Bcl-w|Gtrgal2|Gtrosa41|bclw|c98	BCL2-like 2	protein-coding	13.0	17.0	10.5	14.5	8.0	7.0
Merged-chr10-88504018-4	chr10	88503516	88504516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146690)	promoter-TSS (NM_001146690)	-46.0	NM_001146690	212862.0	Mm.288897	NM_144807	ENSMUSG00000060002	Chpt1	-	choline phosphotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-39300548-2	chr12	39300048	39301048	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	516837.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	5.0	0.0	0.0	0.0	1.5	0.0
Merged-chr14-47351643-3	chr14	47351157	47352157	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR1B|LTR|ERV1	-22203.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	115.5	227.0	149.0	143.5	369.0	215.5
Merged-chr11-9011154-4	chr11	9010670	9011670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303532)	promoter-TSS (NM_001303532)	21.0	NM_001303610	15574.0	Mm.42201	NM_008316	ENSMUSG00000020413	Hus1	-	HUS1 checkpoint clamp component	protein-coding	8.5	26.5	4.5	4.5	16.5	4.5
Merged-chr3-126829940-3	chr3	126829442	126830442	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 14 of 18)	intron (NM_001025438, intron 14 of 18)	113444.0	NM_001034168	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	1.0	3.5	5.5	8.5	34.5	11.5
Merged-chr2-125782785-4	chr2	125782287	125783287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177608)	promoter-TSS (NM_177608)	83.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	0.0	2.0	0.0	0.0	0.0	0.5
Merged-chr3-79572599-4	chr3	79572100	79573100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_152118)	TTS (NR_152118)	4408.0	NR_152118	75879.0	Mm.410800	NR_152118		4930589L23Rik	-	RIKEN cDNA 4930589L23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46389330-5	chr4	46388787	46389787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347095, intron 1 of 4)	CpG	136.0	NM_029086	74753.0	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102470433-4	chr15	102469914	102470914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001174073)	promoter-TSS (NM_001174073)	-218.0	NM_011042	18521.0	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92486927-4	chr5	92486405	92487405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	Lx8|LINE|L1	18752.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74236460-4	chr1	74235961	74236961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029711)	promoter-TSS (NM_029711)	-56.0	NM_001357387	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57130639-4	chr9	57130040	57131040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028636)	promoter-TSS (NM_028636)	-237.0	NM_028636	73744.0	Mm.30110	NM_028636	ENSMUSG00000032295	Man2c1	1110025H24Rik	mannosidase, alpha, class 2C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86581492-4	chr11	86581010	86582010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2648.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71002240-1	chr17	71001740	71002740	+	1000.0	f0_c57.idr	5' UTR (NM_026064, exon 1 of 4)	5' UTR (NM_026064, exon 1 of 4)	293.0	NM_026064	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	24.5	31.0	36.0	14.5	37.5	20.5
Merged-chr1-171388531-4	chr1	171388013	171389013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005508)	promoter-TSS (NM_001005508)	-447.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	57.0	104.0	128.5	80.0	190.0	143.5
Merged-chr17-6079811-4	chr17	6079289	6080289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181392)	promoter-TSS (NM_181392)	-39.0	NM_181392	66467.0	Mm.303441	NM_181392	ENSMUSG00000034345	Gtf2h5	2700017P07Rik|2810432H05Rik|D17Wsu155e	general transcription factor IIH, polypeptide 5	protein-coding	41.0	78.0	65.0	15.0	65.0	74.5
Merged-chr3-132684051-4	chr3	132683512	132684512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163455)	promoter-TSS (NM_001163455)	-132.0	NM_001163455	271981.0	Mm.257864	NM_173032	ENSMUSG00000028030	Tbck	1700120J03Rik|9430001M19|A630047E20Rik|C030007I09Rik|Tbckl	TBC1 domain containing kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-14210246-4	chr10	14209740	14210740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	243861.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.5	0.0	5.5	0.0	0.0	6.5
Merged-chr11-114913070-4	chr11	114912558	114913558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21328.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-31031182-2	chr9	31030682	31031682	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001115130, intron 1 of 5)	CpG	538.0	NM_172765	235132.0	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-92484023-4	chr13	92483544	92484544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163627)	promoter-TSS (NM_001163627)	-13.0	NM_001163627	73942.0	Mm.85935	NM_001163627	ENSMUSG00000034334	Fam151b	4930405M20Rik	family with sequence similarity 151, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5445659-4	chr11	5445131	5446131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080924)	promoter-TSS (NM_001080924)	-784.0	NM_001080924	407821.0	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	19.5	55.0	49.5	41.5	65.5	46.5
Merged-chr4-57947765-1	chr4	57947265	57948265	+	1000.0	f0_c57.idr	intron (NM_011660, intron 3 of 4)	intron (NM_011660, intron 3 of 4)	8646.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41275048-1	chr4	41274548	41275548	+	1000.0	f0_balb.idr	promoter-TSS (NM_026872)	promoter-TSS (NM_026872)	87.0	NM_026872	68926.0	Mm.41864	NM_026872	ENSMUSG00000028433	Ubap2	1190005K07Rik|AA408600|AU045235|UBAP-2|mKIAA1491	ubiquitin-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120527726-4	chr1	120527212	120528212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-22688.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	8.5	37.5	16.5	1.5	20.0	13.5
Merged-chr18-23874275-4	chr18	23873787	23874787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	70317.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-72255637-4	chr1	72255117	72256117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155355, intron 1 of 3)	intron (NR_155355, intron 1 of 3)	11624.0	NR_155355	320933.0	Mm.440953	NR_155355		D230017M19Rik	B930094L07Rik	RIKEN cDNA D230017M19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65391484-4	chr5	65390971	65391971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011292)	promoter-TSS (NM_011292)	-26.0	NM_024471	79464.0	Mm.195776	NM_024471	ENSMUSG00000029199	Lias	2900022L22Rik|4933425M12Rik|7a5ex|C77512|LS|lip-syn	lipoic acid synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-56811892-4	chr14	56811398	56812398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253753)	promoter-TSS (NM_001253753)	-91.0	NR_152252	100503842.0	Mm.297636	NR_152252	ENSMUSG00000100017	2410022M11Rik	-	RIKEN cDNA 2410022M11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87635564-4	chr16	87635056	87636056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63398.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	41.5	93.5	75.0	45.0	84.0	64.5
Merged-chr11-117846965-2	chr11	117846465	117847465	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2272.0	NM_001012273	11799.0	Mm.8552	NM_009689	ENSMUSG00000017716	Birc5	AAC-11|Api4|TIAP|survivin40	baculoviral IAP repeat-containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-36311902-2	chr13	36311402	36312402	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 3 of 5)	intron (NM_001039189, intron 3 of 5)	194259.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117080554-4	chr2	117080053	117081053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40518.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83448889-2	chr6	83448389	83449389	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_028382)	TTS (NR_028382)	7134.0	NR_028382	320775.0	Mm.434334	NR_028382	ENSMUSG00000051844	B230319C09Rik	-	RIKEN cDNA B230319C09 gene	ncRNA	0.0	4.0	12.5	1.5	9.0	2.0
Merged-chr10-120815451-4	chr10	120814918	120815918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177092, intron 5 of 6)	intron (NM_177092, intron 5 of 6)	-42211.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91607180-4	chr16	91606661	91607661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9481.0	NM_030018	77975.0	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120573856-2	chr11	120573356	120574356	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011032)	promoter-TSS (NM_011032)	-603.0	NM_011032	18453.0	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-106552681-2	chr3	106552181	106553181	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286986, intron 2 of 8)	URR1B|DNA|hAT-Charlie	-4879.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139200568-4	chr5	139200093	139201093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024451)	promoter-TSS (NM_024451)	-44.0	NM_001256115	77053.0	Mm.210845	NM_024451	ENSMUSG00000036817	Sun1	4632417G13Rik|5730434D03Rik|Unc84a|mKIAA0810	Sad1 and UNC84 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86848647-2	chr6	86848147	86849147	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177762)	promoter-TSS (NM_177762)	793.0	NR_028298	67170.0	Mm.119489	NR_028298	ENSMUSG00000100164	2610306M01Rik	-	RIKEN cDNA 2610306M01 gene	ncRNA	3.5	8.0	5.0	0.0	9.5	9.0
Merged-chr1-64134645-4	chr1	64134163	64135163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	-13274.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-110394434-4	chr13	110393960	110394960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152804)	promoter-TSS (NM_152804)	-584.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	33.0	176.5	102.0	34.5	162.5	129.0
Merged-chr4-32352127-4	chr4	32351631	32352631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER119|DNA|hAT-Charlie	-65304.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-154008787-4	chr1	154008294	154009294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108865.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-126397658-2	chr2	126397158	126398158	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001080944, exon 13 of 28)	exon (NM_001080944, exon 13 of 28)	93895.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29247298-4	chr6	29246807	29247807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25181.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-3893596-4	chr13	3893101	3894101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001047159)	promoter-TSS (NM_001047159)	-20.0	NM_001047159	56349.0	Mm.22261	NM_019671	ENSMUSG00000021215	Net1	Net1a|mNET1	neuroepithelial cell transforming gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73331063-4	chr13	73330570	73331570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053163)	promoter-TSS (NM_053163)	61.0	NM_053163	94066.0	Mm.26775	NM_053163	ENSMUSG00000021607	Mrpl36	AI646041	mitochondrial ribosomal protein L36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-25690110-2	chr6	25689610	25690610	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010338)	promoter-TSS (NM_010338)	-130.0	NM_010338	14763.0	Mm.409670	NM_010338	ENSMUSG00000039904	Gpr37	AI848630|Pael-R	G protein-coupled receptor 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101765246-2	chr13	101764746	101765746	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 1 of 15)	intron (NM_001077495, intron 1 of 15)	2971.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121718387-4	chr9	121717900	121718900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010918)	promoter-TSS (NM_010918)	-781.0	NM_010918	18087.0	Mm.32842	NM_010918	ENSMUSG00000032525	Nktr	5330401F18Rik|D9Wsu172e	natural killer tumor recognition sequence	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111290032-4	chr9	111289547	111290547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18202.0	NM_175266	77781.0	Mm.209005	NM_175266	ENSMUSG00000046785	Epm2aip1	A930003G21Rik|mKIAA0766	EPM2A (laforin) interacting protein 1	protein-coding	39.5	135.5	127.0	70.5	113.0	102.5
Merged-chr14-121938866-4	chr14	121938332	121939332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 4 of 8)	intron (NM_026861, intron 4 of 8)	-23058.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	42.5	61.0	28.5	43.0	97.5	49.0
Merged-chr18-20895880-2	chr18	20895382	20896382	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_177038, intron 1 of 28)	CpG	196.0	NM_029491	75964.0	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-100163310-4	chr6	100162818	100163818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	124040.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35165465-1	chr17	35164965	35165965	+	1000.0	f0_c57.idr	promoter-TSS (NM_020027)	promoter-TSS (NM_020027)	-588.0	NM_020027	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4625829-4	chr16	4625347	4626347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025571)	promoter-TSS (NM_025571)	-901.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25302003-4	chr15	25301513	25302513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	111751.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19094965-1	chr7	19094465	19095465	+	1000.0	f0_c57.idr	exon (NM_011383, exon 1 of 3)	exon (NM_011383, exon 1 of 3)	421.0	NM_011383	20475.0	Mm.3410	NM_011383	ENSMUSG00000040841	Six5	Dmahp|MDMAHP|TrexBF	sine oculis-related homeobox 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34903166-2	chr17	34902666	34903666	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286575, intron 5 of 27)	intron (NM_001286575, intron 5 of 27)	4192.0	NM_145830	110147.0	Mm.35345	NM_145830	ENSMUSG00000013787	Ehmt2	Bat8|D17Ertd710e|G9a|KMT1C|NG36	euchromatic histone lysine N-methyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141269273-4	chr4	141268766	141269766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-9173.0	NR_151527	100503810.0		NR_151527	ENSMUSG00000085395	Gm13056	-	predicted gene 13056	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92676447-4	chr1	92675964	92676964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27623.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-20941402-4	chr5	20940874	20941874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080977, intron 1 of 7)	ORR1D2|LTR|ERVL-MaLR	-9615.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-39112820-4	chr15	39112328	39113328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172402)	promoter-TSS (NM_172402)	-46.0	NM_198606	223499.0	Mm.321937	NM_198606	ENSMUSG00000022300	Dcaf13	Gm83|Wdsof1	DDB1 and CUL4 associated factor 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-72536289-4	chr12	72535787	72536787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026327)	promoter-TSS (NM_026327)	-70.0	NM_026327	67708.0	Mm.11233	NM_026327	ENSMUSG00000034501	Pcnx4	1810048J11Rik|4932413O10|AU017192|Pcnxl4	pecanex homolog 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26706040-2	chr17	26705540	26706540	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9610.0	NM_029870	77128.0	Mm.275414	NM_029870	ENSMUSG00000048249	Crebrf	A930001N09Rik|LRF	CREB3 regulatory factor	protein-coding	3.0	4.0	1.5	1.5	9.0	1.5
Merged-chr4-139231508-2	chr4	139231008	139232008	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	37397.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	11.0	23.0	32.0	1.5	31.5	15.5
Merged-chr19-4943159-4	chr19	4942711	4943711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172835)	promoter-TSS (NM_172835)	-84.0	NM_001347422	240518.0	Mm.277580	NM_172835	ENSMUSG00000024901	Peli3	6030441F14Rik|A930011L17|BC028931	pellino 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100304198-4	chr15	100303682	100304682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027334)	promoter-TSS (NM_027334)	-635.0	NM_027334	70152.0	Mm.488086	NM_027334	ENSMUSG00000054619	Mettl7a1	2210414H16Rik|3300001H21Rik|Aam-B|Mettl7a|UbiE1	methyltransferase like 7A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-78049531-4	chr2	78049056	78050056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1621.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115494578-4	chr8	115494063	115495063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	212331.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107577641-4	chr4	107577132	107578132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_147221, intron 4 of 10)	intron (NM_147221, intron 4 of 10)	105957.0	NR_151717	56296.0	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9982695-5	chr19	9982291	9983291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_073181, exon 2 of 5)	non-coding (NR_073181, exon 2 of 5)	145.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	80.0	210.0	141.5	86.5	157.5	131.0
Merged-chr4-43056264-2	chr4	43055764	43056764	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-2689.0	NM_021468	22249.0	Mm.128892	NM_021468	ENSMUSG00000028456	Unc13b	Munc13-1|Munc13-2|Unc13a|Unc13h1|Unc13h2	unc-13 homolog B (C. elegans)	protein-coding	0.0	0.0	0.0	1.5	0.0	0.0
Merged-chr19-21913203-4	chr19	21912727	21913727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134887.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	89.5	88.0	108.0	78.5	164.5	113.5
Merged-chr5-114690344-4	chr5	114689836	114690836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019821, intron 1 of 4)	intron (NM_019821, intron 1 of 4)	599.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	40.0	207.0	106.0	29.5	106.0	62.5
Merged-chr2-148875594-4	chr2	148875088	148876088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009976)	promoter-TSS (NM_009976)	-76.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97479036-4	chr6	97478564	97479564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	8756.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	169.0	468.0	310.5	143.5	329.5	194.0
Merged-chr12-112632043-2	chr12	112631543	112632543	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 2 of 12)	intron (NM_007421, intron 2 of 12)	11996.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25355523-4	chr15	25355028	25356028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58236.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75836624-2	chr10	75836124	75837124	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-1743.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32224918-4	chr19	32224422	32225422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 4 of 9)	Lx9|LINE|L1	-13909.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-14783151-4	chr18	14782644	14783644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001100449)	promoter-TSS (NM_001100449)	-101.0	NM_001100449	72504.0	Mm.312233	NM_001100449	ENSMUSG00000054321	Taf4b	105kDa|2610524B04Rik|4932409F03Rik|AW987595|TAFII-105|TAFII105|Taf2c2	TATA-box binding protein associated factor 4b	protein-coding	34.0	52.5	52.0	20.5	31.5	27.5
Merged-chr12-82151192-4	chr12	82150690	82151690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18826.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11513257-4	chr2	11512772	11513772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	-11182.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-17857463-4	chr5	17856978	17857978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	-7686.0	NM_001159556	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35512167-2	chr2	35511667	35512667	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-46291.0	NM_001114125	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-20951541-4	chr1	20951006	20952006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027974)	promoter-TSS (NM_027974)	-120.0	NM_027974	71877.0	Mm.29178	NM_027974	ENSMUSG00000041809	Efhc1	1700029F22Rik|mRib72-1|myoclonin1	EF-hand domain (C-terminal) containing 1	protein-coding	0.0	0.0	0.0	1.5	4.5	3.5
Merged-chr1-128244166-4	chr1	128243598	128244598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026390)	promoter-TSS (NM_026390)	-39.0	NM_026390	67812.0	Mm.293321	NM_026390	ENSMUSG00000026353	Ubxn4	1300013G12Rik|Ubxd2|mKIAA0242	UBX domain protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-43668120-4	chr10	43667626	43668626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74699.0	NR_033558	414125.0	Mm.244305	NR_033558	ENSMUSG00000075184	F830002L21Rik	F930017D23Rik	RIKEN cDNA F830002L21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79844171-4	chr3	79843627	79844627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1465.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	19.0	39.0	51.5	15.0	24.0	44.0
Merged-chr8-75213094-4	chr8	75212632	75213632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029182)	promoter-TSS (NM_029182)	-812.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105047800-4	chr3	105047303	105048303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 1 of 5)	B4A|SINE|B4	5150.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56562436-4	chr18	56561935	56562935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138600)	promoter-TSS (NM_138600)	-134.0	NM_001162989	56698.0	Mm.214569	NM_019996	ENSMUSG00000008301	Phax	2810055C14Rik|4933427L19Rik|AU018701|AU018854|D18Ertd65e|Rnuxa|p55	phosphorylated adaptor for RNA export	protein-coding	0.0	2.0	18.0	0.0	2.0	14.5
Merged-chr6-87850533-4	chr6	87850047	87851047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355195, intron 1 of 4)	CpG	559.0	NM_001109745	12785.0	Mm.290251	NM_013493	ENSMUSG00000030057	Cnbp	AA408710|Cnbp1|Znf9	cellular nucleic acid binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76715341-4	chr15	76714838	76715838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145471)	TTS (NM_145471)	4697.0	NM_001358893	223664.0	Mm.277582	NM_145471	ENSMUSG00000033728	Lrrc14	E130306I01Rik|mKIAA0014	leucine rich repeat containing 14	protein-coding	10.0	42.0	28.0	20.0	36.0	29.5
Merged-chr12-70454244-2	chr12	70453744	70454744	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028339, intron 1 of 7)	intron (NM_028339, intron 1 of 7)	1090.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	8.0	10.5	7.0	5.0	19.5	4.5
Merged-chr11-60104934-4	chr11	60104433	60105433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009021)	promoter-TSS (NM_009021)	-80.0	NM_009021	19377.0	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-69222173-4	chr10	69221677	69222677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252638, intron 2 of 11)	MTC|LTR|ERVL-MaLR	8983.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-98814019-3	chr14	98813525	98814525	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	232111.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-94612456-4	chr3	94611946	94612946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011656)	TTS (NM_011656)	-29730.0	NM_029721	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	6.5	11.5	10.5	6.5	9.5	19.5
Merged-chr2-151996477-4	chr2	151995958	151996958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027172)	promoter-TSS (NM_027172)	-53.0	NM_027172	69698.0	Mm.258262	NM_027172	ENSMUSG00000027463	Slc52a3	2310046K01Rik|RFT2	solute carrier protein family 52, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79403298-4	chr15	79402801	79403801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253817)	promoter-TSS (NM_001253817)	2.0	NM_172608	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	78.0	271.0	157.0	110.0	306.0	218.5
Merged-chr4-53106225-2	chr4	53105725	53106725	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 7 of 49)	intron (NM_013454, intron 7 of 49)	53670.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-37396310-2	chr6	37395810	37396810	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	45838.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74960940-4	chr15	74960444	74961444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5838.0	NM_001164040	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	59.0	168.5	124.0	101.5	262.0	129.0
Merged-chr1-138126986-4	chr1	138126464	138127464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	48162.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-30873120-3	chr1	30872619	30873619	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9863.0	NM_001081080	213109.0	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik	PHD finger protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83649220-3	chr6	83648712	83649712	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016751, intron 4 of 6)	intron (NM_016751, intron 4 of 6)	6904.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	2.0	3.5	2.0	0.0	0.0	2.0
Merged-chr7-100495911-4	chr7	100495430	100496430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011671, intron 2 of 7)	intron (NM_011671, intron 2 of 7)	2572.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	19.0	34.5	27.0	15.0	73.5	33.5
Merged-chr10-86972157-4	chr10	86971654	86972654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 6 of 68)	LTR41B|LTR|ERVL	35788.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118052382-7	chr10	118051873	118052873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89414.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	290.5	682.5	637.5	372.0	778.5	594.5
Merged-chr9-45299432-4	chr9	45298918	45299918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19682.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-3487570-4	chr6	3487056	3488056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178899, intron 1 of 9)	intron (NM_178899, intron 1 of 9)	6942.0	NM_178899	101202.0	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	0.0	0.5	3.5	4.0	14.0	5.5
Merged-chr5-122284758-2	chr5	122284258	122285258	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177242, exon 1 of 6)	exon (NM_177242, exon 1 of 6)	360.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108782030-4	chr6	108781494	108782494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-1065.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	103.0	145.5	125.5	66.0	250.5	186.0
Merged-chr12-105032462-4	chr12	105031960	105032960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003145)	promoter-TSS (NR_003145)	-158.0	NM_028419	73046.0	Mm.29128	NM_028419	ENSMUSG00000021102	Glrx5	-	glutaredoxin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-41830871-4	chr15	41830375	41831375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130164)	promoter-TSS (NM_001130164)	-83.0	NM_001130164	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64721275-4	chr17	64720775	64721775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 16 of 21)	intron (NM_008549, intron 16 of 21)	-45836.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36711976-4	chr16	36711501	36712501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 3 of 7)	intron (NM_001285788, intron 3 of 7)	18023.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31183870-4	chr14	31183403	31184403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347583, exon 14 of 14)	3' UTR (NM_001347583, exon 14 of 14)	-15262.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-58446420-4	chr10	58445930	58446930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011240)	promoter-TSS (NM_011240)	-422.0	NM_011240	19386.0	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-78225904-3	chr12	78225414	78226414	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145965)	promoter-TSS (NM_145965)	-741.0	NM_172952	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138995014-4	chr5	138994506	138995506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008808)	promoter-TSS (NM_008808)	-53.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143461122-4	chr7	143460630	143461630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161624)	promoter-TSS (NM_001161624)	-80.0	NM_001161624	12577.0	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171411747-1	chr1	171411247	171412247	+	1000.0	f1_balb.idr	promoter-TSS (NM_009480)	promoter-TSS (NM_009480)	66.0	NM_009480	22278.0	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	73.0	220.0	181.5	100.5	228.0	127.5
Merged-chr2-164785891-4	chr2	164785386	164786386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133924)	promoter-TSS (NM_133924)	-135.0	NM_133924	101113.0	Mm.295647	NM_133924	ENSMUSG00000050373	Snx21	5730407K14Rik|AI481716	sorting nexin family member 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21461410-4	chr19	21460884	21461884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010266, intron 1 of 13)	L1MB5|LINE|L1	11277.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	1.0	0.5	4.0	1.0	7.5	0.5
Merged-chr11-83443040-2	chr11	83442540	83443540	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080453, intron 7 of 7)	intron (NM_080453, intron 7 of 7)	5346.0	NM_025492	66330.0	Mm.44800	NM_025492	ENSMUSG00000035085	1700020L24Rik	-	RIKEN cDNA 1700020L24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46248034-4	chr17	46247534	46248534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145353)	promoter-TSS (NM_145353)	11.0	NM_009085	20016.0	Mm.3458	NM_009085	ENSMUSG00000067148	Polr1c	40kDa|AA409007|AA959927|AL024089|Polr1e|RPA40|Rpo1-1	polymerase (RNA) I polypeptide C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165326567-4	chr2	165326062	165327062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207706)	promoter-TSS (NM_207706)	-83.0	NM_207706	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120119150-4	chr8	120118663	120119663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172286, intron 1 of 12)	intron (NM_172286, intron 1 of 12)	5011.0	NM_001163761	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96392113-4	chr9	96391640	96392640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27709.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	52.0	82.0	64.5	37.5	106.0	46.0
Merged-chr5-30887458-4	chr5	30886940	30887940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1412.0	NM_174849	231093.0	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27508181-4	chr7	27507686	27508686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019412, intron 5 of 5)	CpG-12884	8862.0	NM_019412	19153.0	Mm.10119	NM_019412	ENSMUSG00000053198	Prx	L-Periaxin	periaxin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103366643-4	chr15	103366120	103367120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010577, exon 1 of 30)	5' UTR (NM_010577, exon 1 of 30)	171.0	NM_010577	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89280760-4	chr6	89280310	89281310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131021, intron 1 of 3)	intron (NR_131021, intron 1 of 3)	4915.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-113614647-4	chr7	113614141	113615141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49654.0	NR_126544	69295.0	Mm.396150	NR_126544	ENSMUSG00000084984	Far1os	1700006P19Rik	fatty acyl CoA reductase 1, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73525013-4	chr14	73524544	73525544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172527, intron 3 of 4)	CpG	205.0	NM_001360484	214254.0	Mm.386852	NM_172527	ENSMUSG00000033405	Nudt15	6530403O17|A730068G11Rik|MTH2	nudix (nucleoside diphosphate linked moiety X)-type motif 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9093754-4	chr13	9093268	9094268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311117)	promoter-TSS (NM_001311117)	-113.0	NM_001311117	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81353613-2	chr10	81353113	81354113	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3156.0	NM_001163166	15353.0	Mm.38474	NM_010440	ENSMUSG00000020232	Hmg20b	AW610687|BRAF35|Hmgx2|Hmgxb2|Smarce1r	high mobility group 20B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52955280-4	chr2	52954770	52955770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	97402.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-84621545-4	chr16	84621027	84622027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58262.0	NR_040537	78023.0	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	57.0	109.0	82.0	54.0	99.0	79.5
Merged-chr16-30945116-4	chr16	30944599	30945599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136333.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74929552-1	chr15	74929052	74930052	+	1000.0	f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-25499.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	111.5	293.0	250.0	59.5	71.0	101.5
Merged-chr11-60830669-4	chr11	60830160	60831160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145428)	promoter-TSS (NM_145428)	29.0	NM_145428	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-149634505-2	chr5	149634005	149635005	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347534, intron 1 of 16)	intron (NM_001347534, intron 1 of 16)	1810.0	NM_013559	15505.0	Mm.270681	NM_013559	ENSMUSG00000029657	Hsph1	105kDa|AI790491|Hsp105|Hsp110|hsp-E7I|hsp110/105	heat shock 105kDa/110kDa protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91666817-4	chr12	91666301	91667301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	-76314.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-30751830-4	chr10	30751347	30752347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 2 of 14)	L2|LINE|L2	51479.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-81859899-4	chr12	81859394	81860394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018814)	promoter-TSS (NM_018814)	-136.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67234266-2	chr17	67233766	67234766	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	L1M2|LINE|L1	120193.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.0	5.0	1.5	0.0	1.5	0.0
Merged-chr17-57342465-6	chr17	57341951	57342951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-16235.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80200660-4	chr18	80200178	80201178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199197)	promoter-TSS (NM_199197)	-59.0	NM_199197	68731.0	Mm.186936	NM_199197	ENSMUSG00000024570	Rbfa	1110032A13Rik|AI595940	ribosome binding factor A	protein-coding	36.0	99.5	50.0	9.5	77.5	38.0
Merged-chr12-79639276-2	chr12	79638776	79639776	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	285457.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85478416-3	chr12	85477910	85478910	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	4520.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108560399-4	chr9	108559912	108560912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011830)	promoter-TSS (NM_011830)	-89.0	NM_011830	23918.0	Mm.6065	NM_011830	ENSMUSG00000062867	Impdh2	IMPD	inosine monophosphate dehydrogenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24934838-2	chr2	24934315	24935315	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_178408, intron 1 of 7)	CpG	466.0	NR_027876	215705.0	Mm.45275	NM_178408	ENSMUSG00000026972	Arrdc1	AI957342|BC004091	arrestin domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80297368-2	chr10	80296868	80297868	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-4452.0	NM_011789	23805.0	Mm.57247	NM_011789	ENSMUSG00000020135	Apc2	AI852447|APCL|R75424	adenomatosis polyposis coli 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4302857-4	chr18	4302356	4303356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50097.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53453389-3	chr19	53452896	53453896	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028427, intron 2 of 9)	intron (NR_028427, intron 2 of 9)	11400.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	4.0	13.5	14.5	46.5	39.5	49.5
Merged-chr10-118818146-4	chr10	118817654	118818654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50749.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59228217-4	chr11	59227713	59228713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130408)	promoter-TSS (NM_001130408)	-51.0	NM_001130408	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	118.5	330.0	197.5	151.0	281.5	225.0
Merged-chr6-42354351-5	chr6	42353845	42354845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289618, intron 4 of 9)	intron (NM_001289618, intron 4 of 9)	4517.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-7869283-4	chr17	7868792	7869792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56708.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122983358-4	chr14	122982850	122983850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360598)	promoter-TSS (NM_001360598)	-67.0	NR_153663	70551.0	Mm.271988	NM_028651	ENSMUSG00000041594	Tmtc4	4930403J22Rik|5730419O14Rik	transmembrane and tetratricopeptide repeat containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85295218-1	chr1	85294718	85295718	+	1000.0	f1_balb.idr	Intergenic	Lx5|LINE|L1	-24652.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34296203-4	chr17	34295705	34296705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8434.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	199.5	479.5	324.5	177.5	486.5	372.0
Merged-chr10-117861073-4	chr10	117860580	117861580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15106.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88681153-4	chr10	88680636	88681636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011461, intron 1 of 5)	B4A|SINE|B4	1887.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	134.5	375.5	304.5	124.0	348.0	246.0
Merged-chr17-35262986-4	chr17	35262483	35263483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010380)	promoter-TSS (NM_010380)	-111.0	NM_010380	14964.0	Mm.439675	NM_010380	ENSMUSG00000073411	H2-D1	H-2D|H2-D	histocompatibility 2, D region locus 1	protein-coding	157.0	279.0	222.0	100.5	197.5	137.5
Merged-chr1-127135938-4	chr1	127135430	127136430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69056.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	7.5	10.0	18.5	25.0	29.0	18.5
Merged-chr10-44691745-4	chr10	44691230	44692230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-232982.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104966456-2	chr3	104965956	104966956	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4747.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91741116-4	chr6	91740601	91741601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 8 of 14)	intron (NM_009320, intron 8 of 14)	57034.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3781633-4	chr12	3781125	3782125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_149729, exon 19 of 19)	non-coding (NR_149729, exon 19 of 19)	-25355.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129532730-4	chr6	129532249	129533249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020590)	promoter-TSS (NM_020590)	-443.0	NM_020590	57436.0	Mm.14638	NM_020590	ENSMUSG00000030161	Gabarapl1	3110025G09Rik|9130422N19Rik|AI196471|Apg8l|Atg8l|GECI|MNCb-0091	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71257341-3	chr17	71256837	71257837	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357338, intron 4 of 7)	intron (NM_001357338, intron 4 of 7)	52683.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	1.5	7.0	8.5	28.0	56.5	60.5
Merged-chr6-88906941-4	chr6	88906451	88907451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011906, intron 2 of 11)	intron (NM_011906, intron 2 of 11)	4700.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46437479-3	chr11	46436984	46437984	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001104556, intron 1 of 1)	CpG	523.0	NM_025426	66213.0	Mm.24159	NM_025426	ENSMUSG00000020397	Med7	1110063B05Rik|Crsp33|Crsp9	mediator complex subunit 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70540106-4	chr11	70539635	70540635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008876)	promoter-TSS (NM_008876)	71.0	NM_001361935	18806.0	Mm.260177	NM_008876	ENSMUSG00000020828	Pld2	PLD1C	phospholipase D2	protein-coding	10.5	27.5	8.5	10.5	26.0	8.5
Merged-chr6-18514650-2	chr6	18514150	18515150	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_149735, intron 1 of 22)	CpG	219.0	NM_080285	30785.0	Mm.224189	NM_080285	ENSMUSG00000000416	Cttnbp2	3010022N24Rik|4732477G22Rik|6430526E05|9130022E09Rik|AU040881|Cortbp2|ORF4|mKIAA1758	cortactin binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76588248-4	chr11	76587729	76588729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10490.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	43.0	94.0	78.5	30.5	78.5	80.5
Merged-chr17-67345380-4	chr17	67344877	67345877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	MTD|LTR|ERVL-MaLR	9082.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	46.5	108.0	67.5	43.5	109.5	83.5
Merged-chr6-134701000-4	chr6	134700510	134701510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170479, intron 3 of 3)	intron (NM_001170479, intron 3 of 3)	60070.0	NM_026371	67774.0	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	85.5	146.0	112.0	56.5	156.0	105.5
Merged-chr12-100778963-4	chr12	100778450	100779450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361020)	promoter-TSS (NM_001361020)	-107.0	NM_001361023	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	59.0	103.0	85.5	71.0	192.0	130.5
Merged-chr14-52023080-6	chr14	52022586	52023586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2353.0	NM_027248	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	44.0	111.5	95.0	53.0	87.0	64.5
Merged-chr11-93885781-4	chr11	93885297	93886297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134012)	promoter-TSS (NM_134012)	-31.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	12.0	83.0	37.5	13.5	93.0	45.0
Merged-chr2-167897355-2	chr2	167896855	167897855	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-34972.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82914429-7	chr18	82913873	82914873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177464)	promoter-TSS (NM_001177464)	-259.0	NM_001177464	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7558383-4	chr9	7557884	7558884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008611)	promoter-TSS (NM_008611)	-45.0	NM_008611	17394.0	Mm.16415	NM_008611	ENSMUSG00000005800	Mmp8	BB138268	matrix metallopeptidase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-38143710-4	chr3	38143203	38144203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64416.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91038191-4	chr1	91037690	91038690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-15254.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121693477-4	chr3	121692988	121693988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22725.0	NM_001033814	619318.0	Mm.371258	NM_001033814	ENSMUSG00000074248	4930432M17Rik	-	RIKEN cDNA 4930432M17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-24567181-2	chr4	24566681	24567681	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_149739, intron 13 of 24)	intron (NR_149739, intron 13 of 24)	70730.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-100032232-2	chr10	100031732	100032732	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347156, intron 1 of 8)	PB1D9|SINE|Alu	16411.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91080518-4	chr1	91080021	91081021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 6 of 22)	intron (NM_008515, intron 6 of 22)	27077.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57794748-4	chr10	57794226	57795226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020561, exon 1 of 8)	exon (NM_020561, exon 1 of 8)	182.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-15958248-7	chr4	15957704	15958704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013752, intron 1 of 15)	CpG	237.0	NM_013752	27354.0	Mm.20866	NM_013752	ENSMUSG00000028224	Nbn	Nbs1	nibrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-104710919-4	chr2	104710427	104711427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177190, intron 1 of 9)	L2c|LINE|L2	1235.0	NM_177190	320554.0	Mm.249065	NM_177190	ENSMUSG00000027175	Tcp11l1	C130096D04Rik	t-complex 11 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-104973652-4	chr5	104973164	104974164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030239, intron 5 of 15)	intron (NM_030239, intron 5 of 15)	9053.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32891701-4	chr17	32891170	32892170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207245)	promoter-TSS (NM_207245)	-67.0	NM_207245	240066.0	Mm.26636	NM_207245	ENSMUSG00000095325	Zfp870	AI173952	zinc finger protein 870	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83508979-2	chr15	83508479	83509479	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357953, intron 1 of 11)	intron (NM_001357953, intron 1 of 11)	1928.0	NM_178869	319953.0	Mm.235007	NM_178869	ENSMUSG00000022442	Ttll1	6330444E16Rik|AV014541	tubulin tyrosine ligase-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90254204-4	chr3	90253721	90254721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013901)	TTS (NM_013901)	363.0	NM_001357152	74343.0	Mm.35627	NM_028881	ENSMUSG00000027936	Crtc2	4632407F12Rik|Torc2	CREB regulated transcription coactivator 2	protein-coding	17.5	46.5	25.5	19.0	51.5	39.5
Merged-chr5-140339980-2	chr5	140339480	140340480	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172277)	TTS (NM_172277)	8024.0	NM_001356584	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47137368-4	chr19	47136874	47137874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133746, intron 1 of 2)	intron (NM_133746, intron 1 of 2)	920.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	4.5	20.0	11.0	9.0	40.5	17.0
Merged-chr12-99393106-4	chr12	99392599	99393599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 1 of 5)	CpG	56975.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191609770-2	chr1	191609268	191610268	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178632, intron 11 of 19)	MTC|LTR|ERVL-MaLR	34132.0	NM_001306204	77065.0	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	2.5	15.5	5.0	13.0	39.5	9.5
Merged-chr1-194677981-1	chr1	194677481	194678481	+	1000.0	f0_balb.idr	intron (NM_008882, intron 3 of 31)	intron (NM_008882, intron 3 of 31)	58152.0	NM_008882	18845.0	Mm.2251	NM_008882	ENSMUSG00000026640	Plxna2	2810428A13Rik|AA589422|AW457381|OCT|PlexA2|Plxn2|mKIAA0463	plexin A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112894711-3	chr12	112894201	112895201	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25840.0	NR_105906	102465567.0		NR_105906	ENSMUSG00000098338	Mir6941	Gm27923|mmu-mir-6941	microRNA 6941	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-80948895-2	chr13	80948395	80949395	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_103550)	TTS (NR_103550)	8492.0	NR_103550	71416.0	Mm.415500	NR_103550		5430425K12Rik	-	RIKEN cDNA 5430425K12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16924619-2	chr7	16924122	16925122	+	1000.0	f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_007590)	promoter-TSS (NM_007590)	-590.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	4.5	16.0	19.0	8.0	41.0	14.5
Merged-chr2-181541973-4	chr2	181541473	181542473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271585, intron 2 of 5)	intron (NM_001271585, intron 2 of 5)	21488.0	NM_001271584	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63408897-4	chr4	63408386	63409386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5441.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16296973-4	chr7	16296452	16297452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10157.0	NM_001136471	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	35.0	57.5	46.0	15.5	22.0	21.0
Merged-chr19-8807032-4	chr19	8806539	8807539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4509.0	NM_001098237	75291.0	Mm.23423	NM_133759	ENSMUSG00000071661	Zbtb3	4930563M09Rik	zinc finger and BTB domain containing 3	protein-coding	8.5	36.5	28.0	21.0	56.5	30.0
Merged-chr13-19395848-4	chr13	19395342	19396342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024270)	promoter-TSS (NM_024270)	-29.0	NM_001347485	76205.0	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111940642-4	chr8	111940147	111941147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026693)	promoter-TSS (NM_026693)	-56.0	NM_026693	93739.0	Mm.371666	NM_026693	ENSMUSG00000031950	Gabarapl2	0610012F20Rik|2900019O08Rik|AI173605|GATE-16|Gef2	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2	protein-coding	54.5	89.5	68.0	54.5	66.5	92.5
Merged-chr8-26015537-4	chr8	26014927	26015927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008033, exon 1 of 9)	exon (NM_008033, exon 1 of 9)	174.0	NM_008033	14272.0	Mm.3496	NM_008033	ENSMUSG00000015994	Fnta	FTA	farnesyltransferase, CAAX box, alpha	protein-coding	14.0	29.5	44.5	13.0	24.0	32.5
Merged-chr10-40300890-4	chr10	40300386	40301386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009665, intron 1 of 7)	CpG	1300.0	NM_007444	100041585.0	Mm.476925	NM_007444	ENSMUSG00000063953	Amd2	AdoMetDC|Amd1|Amd3	S-adenosylmethionine decarboxylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9073972-4	chr4	9073458	9074458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-195335.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46395234-4	chr19	46394730	46395730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016860, intron 1 of 10)	CpG	505.0	NM_016860	54130.0	Mm.3118	NM_016860	ENSMUSG00000025228	Actr1a	Arp1|alpha-Arp1	ARP1 actin-related protein 1A, centractin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97866787-4	chr6	97866288	97867288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	59730.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-108328275-4	chr4	108327768	108328768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027250, exon 1 of 3)	exon (NM_027250, exon 1 of 3)	116.0	NM_027250	69893.0	Mm.28354	NM_027250	ENSMUSG00000048351	Coa7	2010305A19Rik|AI451324|D4Ertd796e|Selrc1	cytochrome c oxidase assembly factor 7	protein-coding	6.0	5.5	2.5	0.0	10.5	9.5
Merged-chr18-34378188-4	chr18	34377684	34378684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E2|LTR|ERVL-MaLR	-4769.0	NM_007874	13476.0	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-121245849-4	chr6	121245349	121246349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011909)	promoter-TSS (NM_011909)	-57.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	7.0	12.5	16.5	5.0	26.5	14.5
Merged-chr4-105164237-4	chr4	105163738	105164738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 1 of 5)	intron (NM_080555, intron 1 of 5)	6891.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21235518-4	chr9	21235020	21236020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110307, intron 2 of 5)	intron (NM_001110307, intron 2 of 5)	3812.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5801361-2	chr17	5800861	5801861	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045079, intron 2 of 2)	RMER5|LTR|ERV1	1871.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147868657-4	chr4	147868144	147869144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010244)	promoter-TSS (NM_010244)	75.0	NM_001025365	28010.0	Mm.250504	NM_133873	ENSMUSG00000029022	Miip	AA553001|AI853621|D4Wsu114e|IIP45	migration and invasion inhibitory protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116423619-4	chr3	116423110	116424110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001080818, exon 1 of 16)	5' UTR (NM_001080818, exon 1 of 16)	422.0	NM_001080818	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90182713-2	chr9	90182213	90183213	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003911, intron 8 of 23)	intron (NM_001003911, intron 8 of 23)	19735.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61224453-2	chr8	61223953	61224953	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021506, intron 1 of 11)	CpG	282.0	NM_021506	59009.0	Mm.27949	NM_021506	ENSMUSG00000031642	Sh3rf1	2200003J05Rik|Posh|R75531|Sh3md2	SH3 domain containing ring finger 1	protein-coding	4.5	3.0	2.5	4.5	3.0	3.0
Merged-chr4-88438915-4	chr4	88438382	88439382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025760)	promoter-TSS (NM_025760)	44.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	11.5	63.5	50.5	12.5	51.5	58.0
Merged-chr11-32324766-4	chr11	32324226	32325226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23085.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-60883665-4	chr8	60883165	60884165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR16|LTR|ERVK	-6728.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96669988-4	chr9	96669484	96670484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38481.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30635400-4	chr14	30634907	30635907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9199.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	8.5	4.5	3.0	0.0	3.5	2.0
Merged-chr13-37345336-4	chr13	37344869	37345869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010745)	promoter-TSS (NM_010745)	24.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	36.5	125.0	78.5	53.0	90.0	72.5
Merged-chr18-65600077-4	chr18	65599578	65600578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361051, intron 1 of 8)	intron (NM_001361051, intron 1 of 8)	-6605.0	NM_001361052	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	1.5	0.0	5.0	2.0	7.5	1.5
Merged-chr12-85598244-4	chr12	85597731	85598731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205052)	promoter-TSS (NM_001205052)	-874.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	24.0	142.5	85.0	24.0	145.0	83.5
Merged-chr7-102248735-4	chr7	102248230	102249230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	1388.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	5.5	45.5	29.0	27.0	32.5	39.0
Merged-chr15-79467834-1	chr15	79467334	79468334	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-25691.0	NM_001359863	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23433055-3	chr13	23432557	23433557	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Tyr-TAC|tRNA|tRNA	-2040.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81176277-4	chr13	81175787	81176787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 86 of 89)	intron (NM_054053, intron 86 of 89)	212213.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49840226-4	chr16	49839719	49840719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15435.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-10469316-4	chr10	10468830	10469830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	2984.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	178.5	512.5	329.5	149.5	305.5	248.5
Merged-chr13-95957411-4	chr13	95956919	95957919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65497.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	65.0	171.0	88.5	53.5	115.0	117.0
Merged-chr1-171059433-4	chr1	171058907	171059907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010188)	promoter-TSS (NM_010188)	-4.0	NM_010188	14131.0	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	63.0	211.0	101.5	48.0	208.0	101.0
Merged-chr8-25602140-4	chr8	25601632	25602632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308482)	promoter-TSS (NM_001308482)	-152.0	NM_001001735	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46598943-4	chr19	46598437	46599437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177812)	promoter-TSS (NM_001177812)	-169.0	NM_001177812	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	5.5	23.0	16.5	15.0	25.5	8.5
Merged-chr18-38339975-2	chr18	38339475	38340475	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011937)	promoter-TSS (NM_011937)	-982.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91012051-4	chr16	91011541	91012541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164483)	promoter-TSS (NM_001164483)	-733.0	NM_001164483	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30674129-4	chr13	30673633	30674633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134068, intron 3 of 7)	intron (NM_134068, intron 3 of 7)	14074.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103058309-4	chr3	103057797	103058797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010937)	promoter-TSS (NM_010937)	12.0	NM_010937	18176.0	Mm.400954	NM_010937	ENSMUSG00000027852	Nras	AV095280|N-ras	neuroblastoma ras oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124050582-4	chr5	124050082	124051082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18322.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	144.0	324.5	198.0	111.5	173.5	201.0
Merged-chr15-100461192-4	chr15	100460679	100461679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-7832.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	8.0	5.0	9.0	14.0	7.5	7.5
Merged-chr13-9125380-4	chr13	9124871	9125871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 3 of 17)	intron (NM_172585, intron 3 of 17)	31490.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60740221-1	chr13	60739721	60740721	+	1000.0	f1_c57bl6.idr	intron (NM_134062, intron 19 of 26)	intron (NM_134062, intron 19 of 26)	46143.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	4.0	0.5	0.5	1.5	0.5	4.5
Merged-chr11-94412749-3	chr11	94412221	94413221	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009783, intron 33 of 35)	intron (NM_009783, intron 33 of 35)	-19745.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0.0	0.5	3.0	0.0	0.0	6.0
Merged-chr7-107594048-4	chr7	107593552	107594552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008905)	promoter-TSS (NM_008905)	-999.0	NM_008905	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120796450-4	chr11	120795949	120796949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026824)	promoter-TSS (NM_026824)	-54.0	NM_026824	68730.0	Mm.180622	NM_026824	ENSMUSG00000025155	Dus1l	1110032N12Rik	dihydrouridine synthase 1-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73533090-4	chr7	73532546	73533546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	8700.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47760205-4	chr17	47759708	47760708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	22277.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	14.5	21.0	24.0	9.5	43.5	32.0
Merged-chr1-184535807-4	chr1	184535278	184536278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040472, intron 2 of 5)	intron (NR_040472, intron 2 of 5)	21913.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37503216-4	chr19	37502734	37503734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37980.0	NR_131009	78640.0	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	7.5	13.0	12.0	5.5	14.0	7.5
Merged-chr5-124425189-2	chr5	124424689	124425689	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081203, intron 1 of 31)	CpG	413.0	NM_001359979	243272.0	Mm.23879	NM_145631	ENSMUSG00000038095	Sbno1	9330180L10Rik|AI849128|AW557836|BC021875|Sbno|mSno1|sno	strawberry notch 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36987695-4	chr16	36987185	36988185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358217, intron 1 of 3)	intron (NM_001358217, intron 1 of 3)	2782.0	NM_001358217	207215.0	Mm.211899	NM_001037321	ENSMUSG00000047746	Fbxo40	9830003A13Rik|mKIAA1195	F-box protein 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46511913-2	chr19	46511413	46512413	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	10265.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90509145-4	chr3	90508637	90509637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293777, intron 1 of 5)	C-rich|Low_complexity|Low_complexity	361.0	NM_001293776	66511.0	Mm.154136	NM_023215	ENSMUSG00000001017	Chtop	2500003M10Rik|Fop|Srag	chromatin target of PRMT1	protein-coding	1.5	6.5	4.0	4.0	7.5	5.5
Merged-chr7-101303584-2	chr7	101303084	101304084	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-1496.0	NR_152152	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19309649-4	chr7	19309100	19310100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008036, exon 1 of 4)	5' UTR (NM_008036, exon 1 of 4)	445.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78448243-4	chr9	78447759	78448759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026658)	promoter-TSS (NM_026658)	49.0	NM_026658	68291.0	Mm.291779	NM_026658	ENSMUSG00000032342	Mto1	2310039H01Rik|5730419A02Rik	mitochondrial tRNA translation optimization 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-90876550-4	chr8	90876051	90877051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	47716.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	10.0	35.0	12.0	16.5	36.0	12.0
Merged-chr11-101278988-4	chr11	101278471	101279471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026618)	promoter-TSS (NM_026618)	-23.0	NM_026618	52469.0	Mm.52	NM_026618	ENSMUSG00000017188	Coa3	1810033A19Rik|Ccdc56|D11Ertd99e|HSPC009	cytochrome C oxidase assembly factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5845361-4	chr13	5844847	5845847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12745.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8690237-4	chr4	8689723	8690723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277149)	promoter-TSS (NM_001277149)	-183.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116123769-4	chr4	116123269	116124269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009015)	promoter-TSS (NM_009015)	-71.0	NR_131048	76786.0	Mm.373813	NR_131048	ENSMUSG00000028700	2510003B16Rik	-	RIKEN cDNA 2510003B16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-63500545-4	chr17	63500077	63501077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015794)	promoter-TSS (NM_015794)	3.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152806710-1	chr2	152806210	152807210	+	1000.0	f0_balb.idr	intron (NM_009743, intron 2 of 2)	L2|LINE|L2	21779.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25321804-4	chr15	25321315	25322315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91949.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-90638130-4	chr11	90637653	90638653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011505)	promoter-TSS (NM_011505)	-31.0	NM_199008	69802.0	Mm.151940	NM_199008	ENSMUSG00000020544	Cox11	2010004I09Rik	cytochrome c oxidase assembly protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40445920-4	chr12	40445418	40446418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172575)	promoter-TSS (NM_172575)	-128.0	NM_178845	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91546623-4	chr16	91546128	91547128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008338)	promoter-TSS (NM_008338)	-466.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	39.0	128.0	62.5	42.5	98.5	50.5
Merged-chr11-107333076-2	chr11	107332576	107333576	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	B3A|SINE|B2	137644.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-108082459-4	chr4	108081960	108082960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011327, intron 10 of 15)	B4|SINE|B4	-4897.0	NR_105823	102465213.0		NR_105823	ENSMUSG00000098980	Mir6397	Gm28004|mmu-mir-6397	microRNA 6397	ncRNA	23.5	53.5	79.5	24.5	58.5	69.5
Merged-chr1-171294813-4	chr1	171294293	171295293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001360931, exon 2 of 7)	5' UTR (NM_001360931, exon 2 of 7)	209.0	NM_001360932	66155.0	Mm.2815	NM_025388	ENSMUSG00000062963	Ufc1	1110021H02Rik|AA062310|ESTM29	ubiquitin-fold modifier conjugating enzyme 1	protein-coding	115.0	287.5	203.5	103.0	297.5	218.0
Merged-chr2-166239372-2	chr2	166238872	166239872	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34536.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-66468052-4	chr18	66467565	66468565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9461.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-92943604-3	chr6	92943113	92944113	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015530, intron 1 of 2)	CpG	3031.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	0.0	6.5	0.0	0.0	3.0	1.0
Merged-chr13-111944315-4	chr13	111943823	111944823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76387.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27605758-3	chr7	27605266	27606266	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007434)	promoter-TSS (NM_007434)	-31.0	NM_007434	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	6.0	54.5	28.0	5.5	6.5	1.0
Merged-chr1-93803879-4	chr1	93803382	93804382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025454)	promoter-TSS (NM_025454)	-83.0	NM_025454	66262.0	Mm.64065	NM_025454	ENSMUSG00000026283	Ing5	1700001C14Rik|1700027H23Rik|1810018M11Rik|AI225768	inhibitor of growth family, member 5	protein-coding	4.5	6.5	2.0	2.5	13.0	7.0
Merged-chr10-62947051-4	chr10	62946556	62947556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152862)	promoter-TSS (NR_152862)	27.0	NM_177372	327762.0	Mm.21492	NM_177372	ENSMUSG00000036875	Dna2	Dna2l|E130315B21Rik	DNA replication helicase/nuclease 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-13393458-4	chr15	13392966	13393966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-219791.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61091272-2	chr18	61090772	61091772	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14300.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128392073-3	chr7	128391576	128392576	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 3 of 4)	intron (NM_026418, intron 3 of 4)	26096.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126220817-2	chr4	126220317	126221317	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-18107.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	16.5	5.0	16.5	12.0	5.0	11.5
Merged-chr2-68985463-4	chr2	68984957	68985957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 3 of 10)	intron (NM_001347161, intron 3 of 10)	124016.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-59013452-4	chr12	59012953	59013953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025656)	promoter-TSS (NM_025656)	62.0	NM_025656	66603.0	Mm.35353	NM_025656	ENSMUSG00000060121	Gemin2	Sip1|gemin-2	gem nuclear organelle associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77537447-2	chr10	77536947	77537947	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 1 of 15)	intron (NM_008404, intron 1 of 15)	7099.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-78376087-7	chr16	78375541	78376541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001297747, intron 1 of 4)	CpG	716.0	NR_002700	654432.0	Mm.458574	NR_002700	ENSMUSG00000044645	Gm7334	EG654432	B-cell translocation gene 3 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144290533-4	chr2	144290036	144291036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B2|LTR|ERVL	19632.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67979536-4	chr10	67979029	67980029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359318)	promoter-TSS (NM_001359318)	-41.0	NM_001359318	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	4.0	4.0	0.5	3.0	13.5	6.0
Merged-chr1-77868102-4	chr1	77867613	77868613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2D|LTR|ERVL	329023.0	NM_001159520	18505.0	Mm.1371	NM_008781	ENSMUSG00000004872	Pax3	Pax-3|Sp|Splchl2|splotch	paired box 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121600583-4	chr3	121600074	121601074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42911.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112344294-4	chr5	112343788	112344788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001359853, exon 2 of 14)	5' UTR (NM_001359853, exon 2 of 14)	1193.0	NM_138646	192232.0	Mm.238043	NM_138646	ENSMUSG00000042328	Hps4	2010205O06Rik|AU040608|BLOC-3|C130020P05Rik|le|mKIAA1667	HPS4, biogenesis of lysosomal organelles complex 3 subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32395923-8	chr2	32395384	32396384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133783)	promoter-TSS (NM_133783)	-6.0	NM_133783	96979.0	Mm.28048	NM_133783	ENSMUSG00000026820	Ptges2	0610038H10Rik|C79137|Gbf1|Mpges2|Pges2	prostaglandin E synthase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80770689-2	chr17	80770189	80771189	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42664.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123032908-4	chr8	123032411	123033411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	9373.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-57801395-4	chr8	57800895	57801895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175032, intron 10 of 11)	intron (NM_175032, intron 10 of 11)	-148340.0	NM_144731	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	6.0	72.5	23.0	14.5	37.0	29.5
Merged-chr6-99436484-4	chr6	99435971	99436971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347345, intron 1 of 19)	intron (NM_001347345, intron 1 of 19)	-1126.0	NM_053202	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34836619-3	chr17	34836113	34837113	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163770)	promoter-TSS (NM_001163770)	290.0	NM_019442	54402.0	Mm.440064	NM_019442	ENSMUSG00000061207	Stk19	G11|RP1	serine/threonine kinase 19	protein-coding	45.5	69.5	58.5	28.5	124.0	77.0
Merged-chr5-140736019-2	chr5	140735519	140736519	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	intron (NM_173405, intron 2 of 7)	11892.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34276852-4	chr13	34276377	34277377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	68305.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137631326-4	chr5	137630848	137631848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033148, intron 1 of 21)	intron (NR_033148, intron 1 of 21)	2225.0	NR_033148	100316903.0	Mm.200763	NR_033148		Gm20605	Lrch4-sap25	predicted gene 20605	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86963762-2	chr17	86963262	86964262	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145491, intron 1 of 4)	intron (NM_145491, intron 1 of 4)	651.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	10.0	6.0	5.5	0.0	1.5	4.0
Merged-chr10-80931499-2	chr10	80930999	80931999	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008655, intron 3 of 3)	intron (NM_008655, intron 3 of 3)	1408.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91891189-3	chr16	91890693	91891693	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 30 of 38)	intron (NM_010587, intron 30 of 38)	40437.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	5.5	8.0	2.5	4.5	1.0	0.0
Merged-chr7-7209677-2	chr7	7209177	7210177	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145577, intron 1 of 4)	intron (NM_145577, intron 1 of 4)	321.0	NM_145577	232855.0	Mm.360403	NM_145577	ENSMUSG00000066838	Zfp772	-	zinc finger protein 772	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97703282-4	chr11	97702783	97703783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011971)	promoter-TSS (NM_011971)	-151.0	NM_011971	26446.0	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126321721-4	chr4	126321223	126322223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133883)	promoter-TSS (NM_133883)	-20.0	NM_133883	100206.0	Mm.11285	NM_133883	ENSMUSG00000042558	Adprhl2	AI836109|Arh3	ADP-ribosylhydrolase like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-27042764-7	chr8	27042272	27043272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039077, intron 1 of 4)	CpG	217.0	NM_054057	114863.0	Mm.277501	NM_054057	ENSMUSG00000031485	Plpbp	1700024N20Rik|2200002F22Rik|Prosc	pyridoxal phosphate binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-156235992-4	chr4	156235448	156236448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021303)	promoter-TSS (NM_021303)	-62.0	NM_021303	57741.0	Mm.423051	NM_021303	ENSMUSG00000095567	Noc2l	AA410003|AF155546|NIR	NOC2 like nucleolar associated transcriptional repressor	protein-coding	21.5	48.5	58.0	20.5	53.5	55.5
Merged-chr17-29436647-2	chr17	29436147	29437147	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54398.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	52.5	167.0	108.0	57.0	129.0	75.5
Merged-chr17-26508368-6	chr17	26507883	26508883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013642)	promoter-TSS (NM_013642)	89.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117312631-4	chr2	117312121	117313121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 2 of 16)	intron (NM_011246, intron 2 of 16)	30256.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93142314-4	chr16	93141795	93142795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	210894.0	NR_040486	69857.0	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154436337-4	chr2	154435861	154436861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009823)	promoter-TSS (NM_009823)	-123.0	NM_172860	12396.0	Mm.29914	NM_009823	ENSMUSG00000038533	Cbfa2t2	A430091M07|C330013D05Rik|Cbfa2t2h|MTGR1	core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-98383225-4	chr4	98382731	98383731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053157)	promoter-TSS (NM_053157)	34.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54259205-4	chr14	54258709	54259709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134076)	promoter-TSS (NM_134076)	-23.0	NM_134076	105501.0	Mm.28771	NM_134076	ENSMUSG00000040997	Abhd4	1110035H23Rik|AI429574|Abh4	abhydrolase domain containing 4	protein-coding	39.5	100.5	70.5	39.5	83.5	51.0
Merged-chr13-101867054-4	chr13	101866568	101867568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98851.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9875245-2	chr13	9874745	9875745	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109924.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-19666664-4	chr5	19666162	19667162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 1 of 22)	intron (NM_001170746, intron 1 of 22)	-240856.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22654567-4	chr16	22654074	22655074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346673, intron 1 of 23)	intron (NM_001346673, intron 1 of 23)	2657.0	NM_138650	110197.0	Mm.194986	NM_138650	ENSMUSG00000022861	Dgkg	2900055E17Rik|90kDa|AI854428|Dagk3|E430001K23Rik|mKIAA4131	diacylglycerol kinase, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46961912-4	chr19	46961395	46962395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164363, intron 1 of 17)	CpG	456.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	42.5	118.0	132.0	40.0	101.5	139.0
Merged-chr2-6721686-4	chr2	6721187	6722187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310447)	promoter-TSS (NM_001310447)	-25.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-108368026-2	chr5	108367526	108368526	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20347.0	NM_008806	18587.0	Mm.1372	NM_008806	ENSMUSG00000029491	Pde6b	Pdeb|r|rd|rd-1|rd1|rd10	phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-41073699-4	chr9	41073192	41074192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	5814.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	53.5	112.0	84.5	39.0	106.0	62.0
Merged-chr15-41612421-4	chr15	41611917	41612917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 2 of 17)	MIR3|SINE|MIR	163314.0	NM_001358977	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124493036-4	chr6	124492489	124493489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181344)	promoter-TSS (NM_181344)	-124.0	NM_181344	232371.0	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57792611-4	chr10	57792124	57793124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1920.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-7939853-4	chr17	7939346	7940346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5768.0	NM_025789	66832.0	Mm.29830	NM_025789	ENSMUSG00000073471	Rsph3a	1700012G05Rik|4930524H12Rik|R74860|Rshl2|Rshl2a	radial spoke 3A homolog (Chlamydomonas)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-81480910-4	chr17	81480410	81481410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	257477.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35156654-4	chr7	35156132	35157132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29753.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	5.0	13.0	10.0	5.0	12.5	6.5
Merged-chr16-92440374-4	chr16	92439836	92440836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	25833.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67350598-4	chr17	67350059	67351059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	3900.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61311309-1	chr18	61310809	61311809	+	1000.0	f1_balb.idr	exon (NM_133249, exon 5 of 12)	exon (NM_133249, exon 5 of 12)	86591.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	0.0	0.0	0.0	1.5	0.0	0.5
Merged-chr10-80323620-6	chr10	80323179	80324179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008793, exon 10 of 15)	exon (NM_008793, exon 10 of 15)	-3131.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114117730-4	chr7	114117226	114118226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025846)	promoter-TSS (NM_025846)	55.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	3.5	8.5	1.5	0.5	16.5	5.0
Merged-chr9-21016724-4	chr9	21016226	21017226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010493, intron 1 of 6)	intron (NM_010493, intron 1 of 6)	786.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124808085-2	chr6	124807585	124808585	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001306050)	promoter-TSS (NM_001306050)	-576.0	NM_001306051	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32713182-9	chr2	32712664	32713664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130860)	promoter-TSS (NM_130860)	-192.0	NR_039536	100628606.0		NR_039536	ENSMUSG00000105841	Mir3960	mmu-mir-3960	microRNA 3960	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43474253-4	chr1	43473735	43474735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	28484.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-5495309-4	chr15	5494805	5495805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1013.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-26669732-7	chr14	26669239	26670239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106132)	promoter-TSS (NR_106132)	107.0	NM_178668	211948.0	Mm.290758	NM_178668	ENSMUSG00000043702	Pde12	2'-PDE|E430028B21Rik	phosphodiesterase 12	protein-coding	4.5	24.0	14.0	4.0	26.0	10.0
Merged-chr17-70831082-2	chr17	70830582	70831582	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15695.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38714169-4	chr6	38713631	38714631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 12 of 14)	intron (NM_010433, intron 12 of 14)	51062.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	6.5	10.5	10.5	13.0	18.0	20.5
Merged-chr10-128626826-4	chr10	128626304	128627304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013765)	promoter-TSS (NM_013765)	-298.0	NM_013765	27370.0	Mm.32118	NM_013765	ENSMUSG00000025362	Rps26	-	ribosomal protein S26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49159135-4	chr7	49158648	49159648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_154465, intron 3 of 3)	intron (NR_154465, intron 3 of 3)	3010.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111166451-4	chr12	111165958	111166958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286122)	promoter-TSS (NM_001286122)	88.0	NM_011632	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5788463-4	chr11	5787943	5788943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146308)	promoter-TSS (NM_001146308)	-40.0	NM_001146309	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34033476-2	chr11	34032976	34033976	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	MIR3|SINE|MIR	-13452.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14911600-4	chr8	14911094	14912094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172751)	promoter-TSS (NM_172751)	-69.0	NM_172751	234094.0	Mm.240298	NM_172751	ENSMUSG00000071176	Arhgef10	6430549H08Rik|mKIAA0294	Rho guanine nucleotide exchange factor (GEF) 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120472095-4	chr6	120471601	120472601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008359, exon 2 of 13)	exon (NM_008359, exon 2 of 13)	8904.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75034392-4	chr14	75033899	75034899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198642, intron 2 of 13)	intron (NM_198642, intron 2 of 13)	18372.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75033828-7	chr8	75033335	75034335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136259, intron 1 of 15)	CpG	149.0	NM_011622	21968.0	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55585282-4	chr14	55584776	55585776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033146)	promoter-TSS (NM_033146)	-22.0	NM_033146	85308.0	Mm.40667	NM_033146	ENSMUSG00000022217	Emc9	1500005A01Rik|Cgi112|Fam158a	ER membrane protein complex subunit 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20794115-4	chr13	20793612	20794612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281854)	promoter-TSS (NM_001281854)	-1.0	NM_001281854	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	125.5	183.5	149.5	55.5	178.0	116.0
Merged-chr10-42680774-4	chr10	42680287	42681287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172416, intron 1 of 5)	intron (NM_172416, intron 1 of 5)	1871.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	1.5	10.5	0.5	1.5	0.5	1.5
Merged-chr1-10280380-4	chr1	10279880	10280880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47710.0	NM_001102430	211673.0	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136466289-4	chr1	136465796	136466796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1552.0	NM_001287179	381293.0	Mm.458468	NM_001081258	ENSMUSG00000041498	Kif14	D1Ertd367e|E130203M01	kinesin family member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-21879823-4	chr4	21879323	21880323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356348)	promoter-TSS (NM_001356348)	-30.0	NM_001356348	230027.0	Mm.5662	NM_172687	ENSMUSG00000028247	Coq3	4732433J24|C77934	coenzyme Q3 methyltransferase	protein-coding	40.0	30.0	60.5	24.0	51.5	67.5
Merged-chr18-53245564-4	chr18	53245068	53246068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029394)	promoter-TSS (NM_029394)	-94.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138214061-3	chr4	138213558	138214558	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2554.0	NM_001122896	15441.0	Mm.348429	NM_010470	ENSMUSG00000028759	Hp1bp3	Hp1bp74	heterochromatin protein 1, binding protein 3	protein-coding	6.0	18.0	11.0	9.0	26.5	8.0
Merged-chr13-3526452-4	chr13	3525958	3526958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11617.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	2.5	4.5	9.5	9.5	6.0	9.0
Merged-chr18-42511279-4	chr18	42510766	42511766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110344)	promoter-TSS (NR_110344)	-221.0	NM_001039474	56070.0	Mm.270511	NM_001039474	ENSMUSG00000024498	Tcerg1	2410022J09Rik|2900090C16Rik|AI428505|CA150b|FBP23|FBP28|Taf2s|ca150|p144	transcription elongation regulator 1 (CA150)	protein-coding	50.0	178.0	115.5	74.5	120.5	113.5
Merged-chr16-30390066-7	chr16	30389560	30390560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1530.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	65.0	150.5	117.5	60.5	135.0	103.0
Merged-chr5-31193176-4	chr5	31192671	31193671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127355)	promoter-TSS (NM_001127355)	-32.0	NM_010122	13667.0	Mm.29394	NM_010122	ENSMUSG00000029145	Eif2b4	Eif2b	eukaryotic translation initiation factor 2B, subunit 4 delta	protein-coding	3.0	6.0	2.0	0.0	22.0	0.5
Merged-chr7-99101894-4	chr7	99101409	99102409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 3 of 14)	intron (NM_178635, intron 3 of 14)	39235.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	139.0	274.5	169.5	107.0	232.0	167.0
Merged-chr19-56702679-2	chr19	56702179	56703179	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19693.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180274132-3	chr2	180273612	180274612	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145851)	promoter-TSS (NM_145851)	-647.0	NM_145851	252966.0	Mm.386884	NM_145851	ENSMUSG00000038990	Cables2	ik3-2	CDK5 and Abl enzyme substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5654972-2	chr17	5654472	5655472	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 2 of 8)	(CCA)n|Simple_repeat|Simple_repeat	-143685.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3912889-4	chr19	3912393	3913393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144870)	promoter-TSS (NM_144870)	-119.0	NM_001271444	225887.0	Mm.44227	NM_144870	ENSMUSG00000059734	Ndufs8	BC021616|CI-23kD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87974941-4	chr17	87974430	87975430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010830)	promoter-TSS (NM_010830)	-120.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-110569251-4	chr13	110568730	110569730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	174186.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	20.5	29.0	15.5	17.0	34.0	20.0
Merged-chr11-117780828-4	chr11	117780326	117781326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145439)	promoter-TSS (NM_145439)	-134.0	NM_145439	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72475205-4	chr8	72474707	72475707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138585)	promoter-TSS (NM_138585)	26.0	NM_001359024	27967.0	Mm.30136	NM_138585	ENSMUSG00000052488	Cherp	5730408I11Rik|D8Wsu96e|DAN16|Scaf6	calcium homeostasis endoplasmic reticulum protein	protein-coding	53.5	168.0	166.5	62.0	175.0	149.5
Merged-chr11-79704538-4	chr11	79704028	79705028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7441.0	NR_029579	387188.0		NR_029579	ENSMUSG00000065395	Mir193a	Mir193|Mirn193|mir-193a|mmu-mir-193|mmu-mir-193a	microRNA 193a	ncRNA	60.0	200.5	129.5	62.5	175.0	116.5
Merged-chr8-22476583-3	chr8	22476083	22477083	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011394)	promoter-TSS (NM_011394)	-117.0	NM_011394	20516.0	Mm.323901	NM_011394	ENSMUSG00000037656	Slc20a2	MolPit2|Pit-2|Pit2|Ram-1|Ram1	solute carrier family 20, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4908108-4	chr16	4907614	4908614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 2 of 17)	intron (NM_001357062, intron 2 of 17)	22014.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127876878-4	chr7	127876321	127877321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172749)	promoter-TSS (NM_172749)	15.0	NM_146259	244219.0	Mm.207872	NM_146259	ENSMUSG00000049728	Zfp668	BC030314|E130018B19Rik|Znf668	zinc finger protein 668	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91865215-4	chr16	91864678	91865678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 26 of 28)	intron (NM_001110275, intron 26 of 28)	66452.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30586067-2	chr14	30585567	30586567	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(GGA)n|Simple_repeat|Simple_repeat	13918.0	NR_037237	100526475.0		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31374539-4	chr14	31374049	31375049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011894, exon 9 of 9)	3' UTR (NM_011894, exon 9 of 9)	37911.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109473272-4	chr11	109472753	109473753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028710)	promoter-TSS (NM_028710)	-24.0	NM_134038	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64253687-4	chr9	64253129	64254129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008927)	promoter-TSS (NM_008927)	-24.0	NM_008927	26395.0	Mm.248907	NM_008927	ENSMUSG00000004936	Map2k1	MAPKK1|MEKK1|Mek1|Prkmk1	mitogen-activated protein kinase kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-53631442-2	chr10	53630942	53631942	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-1003.0	NM_027830	71567.0	Mm.278221	NM_027830	ENSMUSG00000058298	Mcm9	9030408O17Rik|Gm235|Mcmdc1	minichromosome maintenance 9 homologous recombination repair factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24972723-4	chr7	24972222	24973222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010261)	promoter-TSS (NM_010261)	6.0	NM_010261	14470.0	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125581458-4	chr6	125580975	125581975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 6 of 51)	L1_Mur3|LINE|L1	28527.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37963606-4	chr19	37963092	37964092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 19 of 53)	intron (NM_001302140, intron 19 of 53)	79985.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	133.0	218.5	217.0	101.0	253.0	166.5
Merged-chr14-63073873-2	chr14	63073373	63074373	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11B|LTR|ERVK	18800.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-66386241-4	chr8	66385770	66386770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166375)	promoter-TSS (NM_001166375)	-31.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-3084081-4	chr17	3083597	3084597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003519)	promoter-TSS (NR_003519)	86.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88446796-4	chr3	88446299	88447299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013658, intron 10 of 14)	HAL1|LINE|L1	-5848.0	NR_105978	102465611.0		NR_105978	ENSMUSG00000098655	Mir7011	Gm27677|mmu-mir-7011	microRNA 7011	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122375609-4	chr2	122375103	122376103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6685.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	68.0	136.0	142.5	81.5	220.5	146.5
Merged-chr13-5785670-4	chr13	5785152	5786152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR40a|LTR|ERVL	72440.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-24593376-4	chr12	24592863	24593863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145890, intron 6 of 13)	intron (NM_145890, intron 6 of 13)	12644.0	NM_145890	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	17.0	85.0	108.0	25.5	74.5	97.0
Merged-chr5-125340923-6	chr5	125340356	125341356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001205082, exon 1 of 12)	exon (NM_001205082, exon 1 of 12)	238.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	79.0	188.5	136.5	76.0	178.5	144.5
Merged-chr10-96344152-2	chr10	96343652	96344652	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	117945.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105906609-4	chr1	105906104	105907104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83678.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3202477-4	chr11	3201965	3202965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166547)	promoter-TSS (NM_001166547)	112.0	NM_001166548	74203.0	Mm.255649	NM_023743	ENSMUSG00000020454	Eif4enif1	2610509L04Rik|A930019J01Rik|AA410001|AU021239|Clast4|D11Ertd166e	eukaryotic translation initiation factor 4E nuclear import factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-53850507-2	chr1	53850007	53851007	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 21 of 28)	intron (NM_001001883, intron 21 of 28)	1083.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	19.5	60.5	49.5	28.5	83.5	28.0
Merged-chr15-66813613-4	chr15	66813107	66814107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	18222.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191326401-4	chr1	191325899	191326899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025864, intron 1 of 7)	CpG	434.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	19.0	47.0	33.0	11.0	31.5	34.0
Merged-chr15-83009190-4	chr15	83008692	83009692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028728, intron 4 of 5)	intron (NM_028728, intron 4 of 5)	13946.0	NM_028728	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	20.0	27.0	35.5	21.0	44.0	39.5
Merged-chr3-88425216-4	chr3	88424702	88425702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178696)	promoter-TSS (NM_178696)	-61.0	NM_001357749	229517.0	Mm.301740	NM_178696	ENSMUSG00000050144	Slc25a44	6720482A19|B430110G05Rik	solute carrier family 25, member 44	protein-coding	3.5	15.5	12.0	3.5	6.0	4.5
Merged-chr1-180569337-2	chr1	180568837	180569837	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007415, intron 1 of 22)	CpG	446.0	NM_007415	11545.0	Mm.277779	NM_007415	ENSMUSG00000026496	Parp1	5830444G22Rik|AI893648|ARTD1|Adprp|Adprt1|C80510|PARP|PPOL|msPARP|parp-1|sPARP-1	poly (ADP-ribose) polymerase family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51688722-4	chr11	51688215	51689215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025319)	promoter-TSS (NM_025319)	-81.0	NM_025319	66050.0	Mm.35693	NM_025319	ENSMUSG00000007777	0610009B22Rik	-	RIKEN cDNA 0610009B22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95236560-4	chr10	95236085	95237085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	87124.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9846577-2	chr4	9846077	9847077	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013526, intron 1 of 1)	intron (NM_013526, intron 1 of 1)	2205.0	NM_013526	242316.0	Mm.302555	NM_013526	ENSMUSG00000051279	Gdf6	BMP-13|BMP13|GDF16	growth differentiation factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-30030437-4	chr19	30029929	30030929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144873)	promoter-TSS (NM_144873)	-84.0	NM_144873	109113.0	Mm.313364	NM_144873	ENSMUSG00000024817	Uhrf2	2310065A22Rik|AI426270|AW214556|D130071B19Rik|Nirf	ubiquitin-like, containing PHD and RING finger domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173000089-4	chr2	172999594	173000594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175112)	promoter-TSS (NM_175112)	-23.0	NM_175112	66679.0	Mm.4113	NM_175112	ENSMUSG00000027509	Rae1	3230401I12Rik|D2Ertd342e|MNRP|MNRP41	ribonucleic acid export 1	protein-coding	21.5	81.5	67.5	30.5	59.0	65.0
Merged-chr2-181237124-4	chr2	181236623	181237623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183162, intron 6 of 18)	AT_rich|Low_complexity|Low_complexity	4904.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67258514-4	chr18	67258015	67259015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-12685.0	NM_001357518	225651.0	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	Pgap5	metallophosphoesterase 1	protein-coding	7.5	23.5	11.0	3.0	23.0	14.0
Merged-chr9-94696856-4	chr9	94696361	94697361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 2 of 15)	intron (NM_177909, intron 2 of 15)	26969.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	63.5	130.5	94.5	121.0	163.0	133.5
Merged-chr7-27474704-4	chr7	27474210	27475210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133210, intron 1 of 1)	intron (NM_133210, intron 1 of 1)	870.0	NM_133210	170742.0	Mm.200120	NM_133210	ENSMUSG00000055200	Sertad3	AW124805|D1Mgi51|Rbt1|Sei3	SERTA domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74524373-4	chr11	74523868	74524868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	65790.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13106122-1	chr8	13105622	13106622	+	1000.0	f0_balb.idr	promoter-TSS (NM_178708)	promoter-TSS (NM_178708)	401.0	NM_146207	99375.0	Mm.212861	NM_146207	ENSMUSG00000031446	Cul4a	2810470J21Rik|AW495282	cullin 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113870556-4	chr13	113870052	113871052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	76044.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-49016373-4	chr17	49015880	49016880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027452, intron 1 of 2)	intron (NM_027452, intron 1 of 2)	83798.0	NM_027452	70530.0	Mm.133607	NM_027452	ENSMUSG00000040490	Lrfn2	5730420O05Rik|SALM1|mKIAA1246	leucine rich repeat and fibronectin type III domain containing 2	protein-coding	1.5	2.5	4.0	1.5	2.5	4.0
Merged-chr10-114141666-2	chr10	114141166	114142166	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB7_2-LTR_MM|LTR|ERVK	659704.0	NM_146241	237553.0	Mm.445550	NM_146241	ENSMUSG00000050663	Trhde	9330155P21Rik	TRH-degrading enzyme	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62169528-4	chr18	62169040	62170040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10441.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71274417-4	chr2	71273940	71274940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172436, exon 18 of 18)	3' UTR (NM_172436, exon 18 of 18)	62494.0	NM_010064	13427.0	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101240939-4	chr15	101240459	101241459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15773.0	NR_045328	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	0.0	3.0	0.5	0.0	3.0	0.5
Merged-chr5-114596817-4	chr5	114596270	114597270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004180, intron 2 of 2)	intron (NM_001004180, intron 2 of 2)	28519.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87743475-4	chr6	87742956	87743956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159697, intron 2 of 7)	intron (NM_001159697, intron 2 of 7)	12587.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	0.0	5.0	1.0	3.0	7.5	2.0
Merged-chr1-59763390-7	chr1	59762861	59763861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007561)	promoter-TSS (NM_007561)	-918.0	NM_007561	12168.0	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	14.0	27.0	22.5	13.5	14.5	30.5
Merged-chr4-115640777-4	chr4	115640288	115641288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007823, intron 3 of 11)	intron (NM_007823, intron 3 of 11)	6917.0	NM_007823	13120.0	Mm.1840	NM_007823	ENSMUSG00000028713	Cyp4b1	-	cytochrome P450, family 4, subfamily b, polypeptide 1	protein-coding	3.5	0.0	0.5	0.0	1.0	2.0
Merged-chr14-70798776-4	chr14	70798279	70799279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	24398.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	4.0	11.0	14.0	6.0	35.5	13.0
Merged-chr1-174042717-4	chr1	174042207	174043207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_146717, exon 1 of 1)	exon (NM_146717, exon 1 of 1)	774.0	NM_146717	258712.0	Mm.223146	NM_146717	ENSMUSG00000045381	Olfr433	MOR123-1	olfactory receptor 433	protein-coding	5.0	22.5	6.0	9.5	4.0	11.5
Merged-chr4-155812384-4	chr4	155811880	155812880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207678)	promoter-TSS (NM_207678)	-109.0	NM_207678	56036.0	Mm.23492	NM_018856	ENSMUSG00000029068	Ccnl2	1700010A01Rik|1810019L15Rik|2010319M22Rik|AA409936|AW261738|Ania-6b|HCLA-150|Pcee|SB138	cyclin L2	protein-coding	41.0	90.0	109.0	55.0	82.5	49.0
Merged-chr11-103175219-4	chr11	103174709	103175709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019679, intron 1 of 26)	intron (NM_019679, intron 1 of 26)	4071.0	NM_019679	57778.0	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40845642-4	chr4	40845158	40846158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	4480.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130079402-4	chr5	130078879	130079879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130476)	promoter-TSS (NM_001130476)	9.0	NM_001130476	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120826547-2	chr7	120826047	120827047	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16284.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35255672-3	chr17	35255179	35256179	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	4390.0	NR_106169	102465886.0		NR_106169	ENSMUSG00000098269	Mir8094	Gm27513|mmu-mir-8094	microRNA 8094	ncRNA	2.0	9.0	9.0	0.0	4.5	1.5
Merged-chr8-70549908-3	chr8	70549407	70550407	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	10232.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	25.0	26.0	13.0	25.0	29.0	18.5
Merged-chr12-85523300-4	chr12	85522791	85523791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49401.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137817865-1	chr4	137817365	137818365	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-21481.0	NM_007431	11647.0	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	6.0	6.0	13.5	0.0	3.0	7.0
Merged-chr9-118612393-4	chr9	118611936	118612936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	5727.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-84818207-4	chr11	84817712	84818712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145433, intron 2 of 4)	intron (NM_145433, intron 2 of 4)	1303.0	NM_145433	217038.0	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik	mitochondrial rRNA methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17788681-4	chr10	17788197	17789197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	-7522.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	53.5	79.5	45.0	4.0	27.5	12.5
Merged-chr3-108085925-4	chr3	108085430	108086430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346665)	promoter-TSS (NM_001346665)	-46.0	NM_001358018	791415.0	Mm.374791	NM_001358018	ENSMUSG00000056411	Gm12500	-	predicted gene 12500	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118040881-4	chr9	118040382	118041382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001048146, exon 1 of 7)	5' UTR (NM_001048146, exon 1 of 7)	360.0	NM_013727	27215.0	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117249775-4	chr2	117249258	117250258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026620)	promoter-TSS (NM_026620)	19.0	NM_026620	68215.0	Mm.219389	NM_026620	ENSMUSG00000027349	Fam98b	2610510H03Rik	family with sequence similarity 98, member B	protein-coding	3.0	14.0	4.0	3.0	13.0	4.0
Merged-chr5-72270160-1	chr5	72269660	72270660	+	1000.0	f0_balb.idr	intron (NR_003966, intron 15 of 22)	intron (NR_003966, intron 15 of 22)	66817.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3282692-4	chr12	3282191	3283191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 1 of 5)	Charlie1a|DNA|hAT-Charlie	27278.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4238594-2	chr7	4238086	4239086	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081239, exon 4 of 6)	exon (NM_001081239, exon 4 of 6)	832.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	122.0	232.5	171.5	115.0	263.0	201.0
Merged-chr18-73815553-4	chr18	73815036	73816036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145494)	promoter-TSS (NM_145494)	-144.0	NM_145494	107029.0	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	44.0	109.5	67.5	38.5	77.0	54.0
Merged-chr18-61131492-4	chr18	61130987	61131987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001037859)	TTS (NM_001037859)	14019.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60739387-2	chr13	60738891	60739891	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 18 of 26)	intron (NM_134062, intron 18 of 26)	46973.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	6.5	24.5	5.0	9.5	21.0	3.5
Merged-chr9-96376062-4	chr9	96375548	96376548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11617.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	36.5	104.5	77.5	12.5	86.0	53.0
Merged-chr15-102331738-4	chr15	102331232	102332232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021713)	promoter-TSS (NM_021713)	23.0	NM_021713	60315.0	Mm.251638	NM_021713	ENSMUSG00000001285	Myg1	0610023A07Rik|2810433J21Rik|5830429P19Rik|AI325965|Gamm1	melanocyte proliferating gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20939710-1	chr11	20939210	20940210	+	1000.0	f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-108602.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	0.0	9.0	1.5	1.0	3.0	0.0
Merged-chr11-106784280-2	chr11	106783780	106784780	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355676, intron 10 of 13)	intron (NM_001355676, intron 10 of 13)	-1521.0	NR_037224	100526469.0		NR_037224	ENSMUSG00000093273	Mir3064	mir-3064|mmu-mir-3064	microRNA 3064	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32061321-4	chr12	32060833	32061833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011158)	promoter-TSS (NM_011158)	-54.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	0.5	6.5	3.0	5.5	0.5	0.0
Merged-chr9-61025556-4	chr9	61025055	61026055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8486.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-12278643-6	chr12	12278169	12279169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	16530.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99379136-2	chr5	99378636	99379636	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-126209.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13671370-4	chr9	13670859	13671859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173776, intron 1 of 3)	intron (NM_173776, intron 1 of 3)	8899.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172314284-4	chr1	172313797	172314797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080419, intron 1 of 6)	intron (NM_080419, intron 1 of 6)	1930.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	51.5	124.5	117.5	136.5	265.0	164.0
Merged-chr7-27337669-2	chr7	27337169	27338169	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175641)	promoter-TSS (NM_175641)	-57.0	NM_175641	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr11-88048379-4	chr11	88047875	88048875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001078167, intron 1 of 2)	CpG	1002.0	NM_173374	110809.0	Mm.391719	NM_173374	ENSMUSG00000018379	Srsf1	1110054N12Rik|5730507C05Rik|6330415C05Rik|AI482334|AW491331|Asf|Sf2|Sfrs1	serine/arginine-rich splicing factor 1	protein-coding	9.0	20.5	18.0	0.5	10.5	18.0
Merged-chr8-119412807-4	chr8	119412282	119413282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17890.0	NM_019966	56690.0	Mm.423037	NM_019966	ENSMUSG00000074064	Mlycd	AI324784|Mcd	malonyl-CoA decarboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156312152-3	chr2	156311668	156312668	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316755)	promoter-TSS (NM_001316755)	-305.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	296.5	629.5	454.0	244.0	472.0	358.5
Merged-chr10-7833811-4	chr10	7833296	7834296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172785, intron 1 of 5)	intron (NM_172785, intron 1 of 5)	1326.0	NM_172785	237256.0	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	63.5	131.0	111.0	39.0	86.0	75.0
Merged-chr7-120834246-2	chr7	120833746	120834746	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8585.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50867096-4	chr15	50866608	50867608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032000, intron 1 of 5)	intron (NM_032000, intron 1 of 5)	21941.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	20.5	57.0	17.5	16.0	43.0	47.0
Merged-chr13-105300130-4	chr13	105299628	105300628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5643.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69625410-8	chr8	69624941	69625941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045553)	promoter-TSS (NM_001045553)	107.0	NM_172754	234362.0	Mm.458487	NM_172754	ENSMUSG00000060427	Zfp868	AI449175|AW108241|C530032E20|mszf62	zinc finger protein 868	protein-coding	120.5	300.5	235.5	113.5	226.5	176.0
Merged-chr17-10764511-4	chr17	10764010	10765010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	Lx7|LINE|L1	75681.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-10706186-4	chr8	10705696	10706696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	176258.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-73703838-4	chr18	73703356	73704356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008540)	promoter-TSS (NM_008540)	-70.0	NR_155448	105246496.0	Mm.109270	NR_155448		4930578L24Rik	-	RIKEN cDNA 4930578L24 gene	ncRNA	9.5	10.0	21.0	6.0	13.5	8.0
Merged-chr18-17730452-4	chr18	17729947	17730947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-149457.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-86998782-4	chr3	86998294	86999294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007639, exon 2 of 6)	exon (NM_007639, exon 2 of 6)	546.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-103025552-4	chr4	103025055	103026055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290648, intron 2 of 2)	intron (NM_001290648, intron 2 of 2)	1173.0	NM_011831	23919.0	Mm.100163	NM_011831	ENSMUSG00000066090	Insl5	RIF2	insulin-like 5	protein-coding	8.5	11.0	6.5	17.0	13.5	8.5
Merged-chr6-108185484-4	chr6	108184963	108185963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145937, exon 1 of 9)	exon (NM_145937, exon 1 of 9)	120.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5529546-4	chr19	5529052	5530052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19035.0	NM_001024560	225861.0	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	0.0	2.0	11.0	3.0	1.5	6.0
Merged-chr15-98683364-4	chr15	98682872	98683872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5911.0	NM_172612	223881.0	Mm.274010	NM_172612	ENSMUSG00000054855	Rnd1	A830014L09Rik|Arhs	Rho family GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120522009-2	chr5	120521509	120522509	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 8 of 13)	intron (NM_001177595, intron 8 of 13)	10817.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45833325-2	chr7	45832825	45833825	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008172, exon 12 of 12)	exon (NM_008172, exon 12 of 12)	-2536.0	NM_153419	101612.0	Mm.274847	NM_153419	ENSMUSG00000053801	Grwd1	A301|AI504353|Grwd|Wdr28	glutamate-rich WD repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118107217-4	chr11	118106737	118107737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167746, intron 18 of 80)	intron (NM_001167746, intron 18 of 80)	21982.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27680344-2	chr2	27679844	27680844	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	3143.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112281931-4	chr5	112281388	112282388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	MER44B|DNA|TcMar-Tigger	5197.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	6.5	52.0	29.0	25.0	48.0	15.5
Merged-chr8-83903823-2	chr8	83903322	83904322	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181039, intron 1 of 22)	intron (NM_181039, intron 1 of 22)	3724.0	NM_181039	330814.0	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	0.0	5.5	0.0	0.0	1.5	0.0
Merged-chr5-143475564-5	chr5	143474983	143475983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 4 of 14)	intron (NM_144915, intron 4 of 14)	10990.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75533133-4	chr11	75532637	75533637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 2 of 13)	intron (NM_001199284, intron 2 of 13)	1025.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23453564-4	chr13	23453056	23454056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12345.0	NM_013483	12231.0	Mm.1420	NM_013483	ENSMUSG00000000706	Btn1a1	Btn	butyrophilin, subfamily 1, member A1	protein-coding	1.0	30.0	7.5	1.0	26.5	7.5
Merged-chr16-17508876-4	chr16	17508377	17509377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331226)	promoter-TSS (NM_001331226)	194.0	NM_025808	66863.0	Mm.161726	NM_025808	ENSMUSG00000022761	Lztr1	1200003E21Rik|AI591627|AW550890	leucine-zipper-like transcriptional regulator, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-41768548-4	chr5	41768005	41769005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4285.0	NM_007524	12020.0	Mm.2530	NM_007524	ENSMUSG00000049691	Nkx3-2	Bapx1|NKX3.2|Nkx-3.2	NK3 homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116462523-4	chr7	116461969	116462969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER76|LTR|ERVL	-19011.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33474513-2	chr16	33474013	33475013	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358570, intron 7 of 8)	MTD|LTR|ERVL-MaLR	-43816.0	NM_134251	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-96161653-6	chr5	96161154	96162154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285511)	promoter-TSS (NM_001285511)	101.0	NM_178854	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48119878-2	chr17	48119378	48120378	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26429.0	NM_001177897	328829.0	Mm.466999	NM_177824	ENSMUSG00000073386	9830107B12Rik	Trem5	RIKEN cDNA 9830107B12 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89087635-4	chr3	89087164	89088164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028188, intron 9 of 10)	intron (NM_028188, intron 9 of 10)	2367.0	NM_001083808	72296.0	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36675528-4	chr16	36675017	36676017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9440.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61486818-4	chr18	61486303	61487303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2196.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	0.5	28.5	20.5	41.5	100.5	66.5
Merged-chr4-122835053-2	chr4	122834553	122835553	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1174.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11006856-4	chr4	11006304	11007304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175175, intron 1 of 1)	intron (NM_175175, intron 1 of 1)	815.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	18.5	111.5	92.5	3.5	12.5	15.5
Merged-chr1-170702518-4	chr1	170702009	170703009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57977.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45389669-4	chr13	45389170	45390170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153789)	promoter-TSS (NM_153789)	-72.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	8.5	11.5	1.0	0.0	3.0	7.5
Merged-chr11-70375720-2	chr11	70375220	70376220	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23689.0	NM_009660	11687.0	Mm.4584	NM_009660	ENSMUSG00000018924	Alox15	12-LO|12/15-LO|15-LOX|Alox12l|L-12LO	arachidonate 15-lipoxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172347605-4	chr1	172347097	172348097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039484, intron 1 of 1)	Charlie1b|DNA|hAT-Charlie	6387.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	18.0	25.0	16.5	0.0	3.5	4.0
Merged-chr9-59539748-5	chr9	59539282	59540282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010421, exon 1 of 14)	exon (NM_010421, exon 1 of 14)	242.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-106785333-4	chr3	106784831	106785831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007651, intron 1 of 7)	AT_rich|Low_complexity|Low_complexity	4818.0	NM_007651	12508.0	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52857790-4	chr2	52857307	52858307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172409)	promoter-TSS (NM_172409)	-61.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108053063-4	chr9	108052572	108053572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177275)	promoter-TSS (NM_177275)	-87.0	NM_177275	320844.0	Mm.449806	NM_177275	ENSMUSG00000032593	Amigo3	E430002N15Rik|ali3|mKIAA1851	adhesion molecule with Ig like domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158130660-7	chr2	158130158	158131158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 6 of 12)	intron (NM_009373, intron 6 of 12)	15734.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102981626-2	chr2	102981126	102982126	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79961.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.5	3.5	0.0	0.0	2.0	2.5
Merged-chr10-95357263-3	chr10	95356759	95357759	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045337, intron 1 of 2)	intron (NR_045337, intron 1 of 2)	20983.0	NR_045337	69629.0	Mm.250542	NR_045337	ENSMUSG00000100550	2310039L15Rik	A53T-syn|G2-3|PrPsynA53T|Tg(Prnp-SNCA*A53T)23Mkle	RIKEN cDNA 2310039L15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10279855-4	chr19	10279368	10280368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	25009.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-14579606-4	chr1	14579133	14580133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	176333.0	NM_001360810	17681.0	Mm.5820	NM_010827	ENSMUSG00000025930	Msc	MyoR|bHLHa22	musculin	protein-coding	16.0	32.0	14.5	12.0	42.5	26.0
Merged-chr7-75821749-2	chr7	75821249	75822249	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26589.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105745492-4	chr5	105744927	105745927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122768, intron 2 of 2)	intron (NM_001122768, intron 2 of 2)	44617.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	21.0	13.5	27.5	28.0	29.5	16.0
Merged-chr1-149954164-4	chr1	149953659	149954659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	7131.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128745365-4	chr7	128744863	128745863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029982, intron 1 of 18)	L2c|LINE|L2	493.0	NM_001029982	207352.0	Mm.297105	NM_001029982	ENSMUSG00000055319	Sec23ip	D7Ertd373e|p125	Sec23 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105596764-7	chr8	105596173	105597173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8556.0	NM_001081241	75687.0	Mm.41261	NM_001081241	ENSMUSG00000038604	Ripor1	2310066E14Rik|AI837433|Fam65a	RHO family interacting cell polarization regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132656778-4	chr7	132656261	132657261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 6 of 6)	intron (NM_029609, intron 6 of 6)	46118.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	0.0	0.0	0.0	2.5	9.5	5.0
Merged-chr4-128655518-2	chr4	128655018	128656018	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	816.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-97546326-4	chr13	97545832	97546832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13668.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-106947076-4	chr13	106946568	106947568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025447)	promoter-TSS (NM_025447)	-61.0	NM_025447	66254.0	Mm.9563	NM_025447	ENSMUSG00000021692	Dimt1	1500031M22Rik|AV111347|Dimt1l	DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	protein-coding	2.5	17.5	20.0	3.5	19.5	20.0
Merged-chr5-117131555-1	chr5	117131055	117132055	+	1000.0	f1_balb.idr	intron (NM_001199685, intron 1 of 20)	intron (NM_001199685, intron 1 of 20)	-2033.0	NM_001081308	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	5.5	5.5	16.5	12.5	17.0	8.0
Merged-chr16-20425936-4	chr16	20425444	20426444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176839, intron 1 of 6)	CpG	450.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30654359-4	chr14	30653869	30654869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177815)	promoter-TSS (NM_177815)	-6.0	NM_177815	328370.0	Mm.259657	NM_177815	ENSMUSG00000052395	Rft1	D930025H04	RFT1 homolog	protein-coding	76.5	140.5	90.0	39.5	82.5	91.0
Merged-chr17-29490527-4	chr17	29490033	29491033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008842)	promoter-TSS (NM_008842)	-512.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	68.0	202.0	116.5	73.5	219.0	148.0
Merged-chr4-43959883-4	chr4	43959388	43960388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027450, intron 1 of 4)	intron (NM_027450, intron 1 of 4)	2186.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27860585-4	chr7	27860092	27861092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024726)	promoter-TSS (NM_001024726)	7.0	NM_001024726	545938.0	Mm.458180	NM_001024726	ENSMUSG00000020420	Zfp607a	4732475C15Rik|Zfp607	zinc finger protein 607A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106159935-4	chr9	106159399	106160399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1761.0	NM_174846	235582.0	Mm.335420	NM_174846	ENSMUSG00000020258	Glyctk	6230410P16Rik|C430006L12	glycerate kinase	protein-coding	194.5	383.0	421.5	245.5	556.5	440.5
Merged-chr12-8341982-1	chr12	8341482	8342482	+	1000.0	f1_c57bl6.idr	exon (NM_021429, exon 7 of 7)	exon (NM_021429, exon 7 of 7)	28549.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0.0	14.5	4.0	0.0	3.0	7.0
Merged-chr3-87930216-4	chr3	87929721	87930721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177663)	promoter-TSS (NM_177663)	-26.0	NM_153562	229503.0	Mm.296008	NM_153562	ENSMUSG00000004896	Rrnad1	-	ribosomal RNA adenine dimethylase domain containing 1	protein-coding	33.0	54.0	48.5	34.5	57.0	46.0
Merged-chr3-137950643-4	chr3	137950148	137951148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 3 of 8)	intron (NM_011932, intron 3 of 8)	30901.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103342627-4	chr15	103342117	103343117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2531.0	NM_013866	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155249418-4	chr4	155248875	155249875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190445)	promoter-TSS (NM_001190445)	-591.0	NM_001190445	67513.0	Mm.10374	NM_001190445	ENSMUSG00000073684	Faap20	2610002J02Rik	Fanconi anemia core complex associated protein 20	protein-coding	27.5	64.0	55.5	29.0	27.0	45.0
Merged-chr4-119422341-4	chr4	119421823	119422823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355214)	promoter-TSS (NM_001355214)	97.0	NM_001355214	106564.0	Mm.27245	NM_026494	ENSMUSG00000028636	Ppcs	6330579B17Rik|AI413471|AI790434	phosphopantothenoylcysteine synthetase	protein-coding	5.0	30.0	16.5	1.5	42.5	35.0
Merged-chr8-77442630-4	chr8	77442112	77443112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 3 of 22)	intron (NM_030113, intron 3 of 22)	-74444.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-22474812-4	chr6	22474298	22475298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118717.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-123267383-4	chr3	123266848	123267848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027135)	promoter-TSS (NM_027135)	-148.0	NM_027135	69608.0	Mm.29293	NM_027135	ENSMUSG00000039234	Sec24d	2310020L09Rik|Gm1349	Sec24 related gene family, member D (S. cerevisiae)	protein-coding	194.5	543.5	406.5	163.5	461.0	374.5
Merged-chr12-91384492-4	chr12	91383996	91384996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181815)	promoter-TSS (NM_181815)	-87.0	NM_181815	75216.0	Mm.312204	NM_181815	ENSMUSG00000061533	Cep128	4930534B04Rik|5430424K18Rik|AI449708|AI480494|E230024F20	centrosomal protein 128	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-79392311-4	chr7	79391801	79392801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145946)	promoter-TSS (NM_145946)	-37.0	NM_145946	208836.0	Mm.349493	NM_145946	ENSMUSG00000039187	Fanci	-	Fanconi anemia, complementation group I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45955244-4	chr9	45954769	45955769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172257)	promoter-TSS (NM_172257)	-20.0	NM_172257	214597.0	Mm.379345	NM_172257	ENSMUSG00000034908	Sidt2	B930096O19|BC023957|CGI-40	SID1 transmembrane family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105701141-4	chr8	105700634	105701634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348349)	promoter-TSS (NM_001348349)	-14.0	NM_001047436	56513.0	Mm.472753	NM_019695	ENSMUSG00000005699	Pard6a	0710008C04Rik|2610010A15Rik|PAR-6A|PAR6alpha|Par-6|Par6|Par6c|TAX40|Tip-40	par-6 family cell polarity regulator alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96777687-4	chr11	96777185	96778185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163389)	promoter-TSS (NM_001163389)	-130.0	NM_001163389	74479.0	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	0.0	1.5	4.5	0.0	9.5	0.0
Merged-chr7-27228621-4	chr7	27228137	27229137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181593)	promoter-TSS (NM_181593)	-40.0	NM_181593	233011.0	Mm.30963	NM_181593	ENSMUSG00000003752	Itpkc	9130023N17Rik	inositol 1,4,5-trisphosphate 3-kinase C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80450152-2	chr17	80449652	80450652	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009231, intron 5 of 21)	intron (NM_009231, intron 5 of 21)	30301.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143602290-4	chr5	143601791	143602791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20156.0	NM_011182	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	15.0	63.5	43.0	5.0	19.0	30.5
Merged-chr17-33563932-4	chr17	33563450	33564450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053214, intron 1 of 27)	L3b|LINE|CR1	8243.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	103.5	234.5	121.0	73.5	115.0	98.5
Merged-chr11-83302690-4	chr11	83302156	83303156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001035854)	promoter-TSS (NM_001035854)	-41.0	NM_027915	71770.0	Mm.39053	NM_027915	ENSMUSG00000035152	Ap2b1	1300012O03Rik|AI788979|AP105B	adaptor-related protein complex 2, beta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126829577-2	chr8	126829077	126830077	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19443.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	6.0	30.0	29.0	6.0	30.5	29.0
Merged-chr9-85750009-2	chr9	85749509	85750509	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081282)	promoter-TSS (NM_001081282)	-675.0	NM_175371	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80928687-4	chr10	80928152	80929152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1439.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58734337-4	chr15	58733849	58734849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89078.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88118946-4	chr17	88118460	88119460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6552.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132959027-2	chr4	132958527	132959527	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15068.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121710286-4	chr9	121709784	121710784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026794)	promoter-TSS (NM_026794)	-105.0	NM_026794	26901.0	Mm.24848	NM_026794	ENSMUSG00000032526	Ss18l2	1110020I04Rik|AI463209|Deb1	SS18, nBAF chromatin remodeling complex subunit like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50377625-4	chr11	50377115	50378115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021510)	promoter-TSS (NM_021510)	-104.0	NM_021510	59013.0	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129672617-5	chr4	129672059	129673059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008468, intron 1 of 13)	CpG	208.0	NM_008468	16650.0	Mm.202358	NM_008468	ENSMUSG00000003731	Kpna6	IPOA7|Kpna5|NPI-2	karyopherin (importin) alpha 6	protein-coding	56.5	178.5	176.0	122.0	168.0	183.5
Merged-chr8-82773731-3	chr8	82773229	82774229	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145600, intron 1 of 9)	intron (NM_145600, intron 1 of 9)	397.0	NM_145600	30932.0	Mm.269248	NM_145600	ENSMUSG00000031711	Zfp330	BC008086|Noa36|Znf330	zinc finger protein 330	protein-coding	73.5	204.0	160.5	63.5	162.0	158.5
Merged-chr8-69184287-4	chr8	69183786	69184786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24760.0	NM_001013379	234358.0	Mm.334577	NM_001013379	ENSMUSG00000059897	Zfp930	-	zinc finger protein 930	protein-coding	26.5	2.0	2.5	0.0	1.0	2.0
Merged-chr16-22547809-4	chr16	22547315	22548315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346673, intron 19 of 23)	intron (NM_001346673, intron 19 of 23)	-15631.0	NR_106170	102465887.0		NR_106170	ENSMUSG00000099071	Mir8095	Gm27566|mmu-mir-8095	microRNA 8095	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35969887-4	chr17	35969405	35970405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013854)	promoter-TSS (NM_013854)	-155.0	NM_013854	224742.0	Mm.329022	NM_013854	ENSMUSG00000038762	Abcf1	AU041969|Abc50|D17Wsu166e|GCN20	ATP-binding cassette, sub-family F (GCN20), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136035268-4	chr4	136034793	136035793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-13644.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	23.0	73.0	44.5	58.5	113.5	76.5
Merged-chr8-40031539-4	chr8	40031068	40032068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	255385.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	15.5	10.5	24.5	8.0	10.0	21.0
Merged-chr6-97392962-2	chr6	97392462	97393462	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	RCHARR1|DNA|hAT-Charlie	66324.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19163170-4	chr3	19162672	19163672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028840)	promoter-TSS (NM_028840)	-77.0	NM_001357689	74252.0	Mm.200383	NM_028840	ENSMUSG00000027599	Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding	0.5	2.0	0.0	3.5	2.5	1.5
Merged-chr1-132011010-5	chr1	132010473	132011473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007923, intron 1 of 4)	L1MB8|LINE|L1	3368.0	NM_007923	13714.0	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132462480-2	chr4	132461980	132462980	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026039, intron 2 of 2)	B1_Mur4|SINE|Alu	1441.0	NM_026039	67219.0	Mm.45929	NM_026039	ENSMUSG00000066042	Med18	2810046C01Rik	mediator complex subunit 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70645411-4	chr8	70644907	70645907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12951.0	NM_001330687	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	157.5	251.5	203.0	5.0	21.5	25.5
Merged-chr17-87303700-4	chr17	87303192	87304192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 3 of 19)	intron (NM_028639, intron 3 of 19)	20806.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-92530778-4	chr13	92530236	92531236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173392)	promoter-TSS (NM_173392)	74.0	NM_173392	218441.0	Mm.259585	NM_173392	ENSMUSG00000021706	Zfyve16	AI035632|B130024H06Rik|B130031L15|mKIAA0305	zinc finger, FYVE domain containing 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98783490-4	chr11	98783021	98784021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8144.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-42980314-4	chr7	42979801	42980801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR3-int|LTR|ERVK	-38497.0	NM_001105061	668612.0	Mm.469896	NM_001105061	ENSMUSG00000091528	Gm9268	EG668612|Vmn2r64	predicted gene 9268	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-4793326-4	chr4	4792805	4793805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177730)	promoter-TSS (NM_177730)	1.0	NM_177730	242291.0	Mm.218889	NM_177730	ENSMUSG00000066324	Impad1	1110001C20Rik|AA408880|AI451589|AL022796|B230207P20|Jaws|gPAPP	inositol monophosphatase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8536161-4	chr4	8535678	8536678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021518, intron 1 of 7)	CpG	534.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	50.5	136.0	140.5	89.0	171.5	141.0
Merged-chr10-93432662-4	chr10	93432192	93433192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106161)	promoter-TSS (NR_106161)	-415.0	NR_106161	102465791.0		NR_106161	ENSMUSG00000098679	Mir7688	Gm27874|mmu-mir-7688	microRNA 7688	ncRNA	20.0	11.5	7.5	5.0	11.5	11.0
Merged-chr2-167777690-8	chr2	167777137	167778137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	86460.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121277305-2	chr9	121276805	121277805	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177589)	promoter-TSS (NM_177589)	-133.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	1.0	2.0	2.5	0.0	5.5	0.5
Merged-chr2-166155249-2	chr2	166154749	166155749	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252578)	promoter-TSS (NM_001252578)	36.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4093909-2	chr11	4093409	4094409	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026443, exon 3 of 4)	exon (NM_026443, exon 3 of 4)	1522.0	NM_026443	67900.0	Mm.41719	NM_026443	ENSMUSG00000004748	Mtfp1	1700020C11Rik|2610507A21Rik|AV005788|Mtp18	mitochondrial fission process 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-129995941-1	chr5	129995441	129996441	+	1000.0	f1_balb.idr	intron (NM_001357025, intron 7 of 10)	intron (NM_001357025, intron 7 of 10)	7108.0	NM_010368	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	2.0	0.0	1.0	2.0	9.0	5.5
Merged-chr2-27025752-4	chr2	27025251	27026251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177627, intron 3 of 8)	L2|LINE|L2	2247.0	NM_172659	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-32785919-4	chr14	32785407	32786407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163616)	promoter-TSS (NM_001163616)	-56.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120747880-2	chr8	120747380	120748380	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301811, intron 5 of 8)	intron (NM_001301811, intron 5 of 8)	9241.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88618319-4	chr3	88617822	88618822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198911, intron 2 of 22)	intron (NM_001198911, intron 2 of 22)	2115.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	11.5	66.5	65.0	37.0	60.0	53.0
Merged-chr3-95106921-4	chr3	95106416	95107416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008847)	promoter-TSS (NM_008847)	14.0	NM_008847	18720.0	Mm.296409	NM_008847	ENSMUSG00000028126	Pip5k1a	PI4P5K-I[a]|PIP5K1-alpha|PIP5KIalpha|Pipk5a	phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha	protein-coding	1.0	4.5	0.5	1.0	4.5	0.5
Merged-chr8-69920462-4	chr8	69919982	69920982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 3 of 12)	intron (NM_001286450, intron 3 of 12)	-17924.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	99.5	241.0	141.0	88.5	203.0	142.0
Merged-chr6-88045239-4	chr6	88044715	88045715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293652)	promoter-TSS (NM_001293652)	55.0	NM_001293652	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116530006-4	chr7	116529487	116530487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360375, intron 11 of 14)	ORR1B2|LTR|ERVL-MaLR	25618.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-137386532-4	chr6	137386017	137387017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 7 of 26)	intron (NM_011216, intron 7 of 26)	-24204.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146222195-4	chr6	146221694	146222694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 45 of 56)	intron (NM_019923, intron 45 of 56)	280029.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32777995-2	chr2	32777495	32778495	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028273)	promoter-TSS (NR_028273)	7.0	NR_028273	100302592.0		NR_028273	ENSMUSG00000064741	Snord14a	Rnu14|U14	small nucleolar RNA, C/D box 14A	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128771245-4	chr2	128770751	128771751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 8 of 18)	intron (NM_008587, intron 8 of 18)	-47052.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	20.0	26.5	46.0	17.0	42.5	28.5
Merged-chr8-84979914-4	chr8	84979442	84980442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1194.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	53.0	156.5	97.5	96.5	126.5	87.5
Merged-chr7-141328108-4	chr7	141327599	141328599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282076)	promoter-TSS (NM_001282076)	-31.0	NM_001141950	71448.0	Mm.248960	NM_027797	ENSMUSG00000025505	Tmem80	5530601I19Rik	transmembrane protein 80	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125581423-4	chr7	125580957	125581957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-21972.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	10.0	24.0	9.0	11.5	63.0	39.0
Merged-chr10-116581519-11	chr10	116581042	116582042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028082)	promoter-TSS (NM_028082)	-31.0	NM_001359249	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118633038-4	chr9	118632528	118633528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 3 of 27)	intron (NM_133721, intron 3 of 27)	26319.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133353034-2	chr4	133352534	133353534	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13719.0	NM_199306	230796.0	Mm.226576	NM_199306	ENSMUSG00000037622	Wdtc1	Gm695|adipose|adp	WD and tetratricopeptide repeats 1	protein-coding	13.0	26.5	12.5	6.0	30.5	19.0
Merged-chr18-82762799-4	chr18	82762292	82763292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3753.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12991844-4	chr17	12991325	12992325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175394, intron 1 of 5)	CpG	434.0	NM_001113533	60532.0	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66454158-4	chr15	66453638	66454638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019457, exon 5 of 12)	exon (NM_019457, exon 5 of 12)	46772.0	NM_019457	54562.0	Mm.244890	NM_019457	ENSMUSG00000022375	Lrrc6	LRTP	leucine rich repeat containing 6 (testis)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114694172-4	chr11	114693632	114694632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 3 of 13)	intron (NM_053273, intron 3 of 13)	18664.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31220171-2	chr5	31219671	31220671	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008014, intron 1 of 9)	CpG	374.0	NM_008014	14208.0	Mm.14501	NM_008014	ENSMUSG00000029147	Ppm1g	AI385652|Fin13	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31226719-2	chr15	31226219	31227219	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146057, intron 1 of 3)	intron (NM_146057, intron 1 of 3)	2334.0	NM_146057	223453.0	Mm.222867	NM_146057	ENSMUSG00000039168	Dap	4921531N22Rik|AI789753|AU040360	death-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130284416-4	chr2	130283910	130284910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130884)	promoter-TSS (NM_130884)	41.0	NM_130884	170718.0	Mm.29590	NM_130884	ENSMUSG00000027406	Idh3b	C78231	isocitrate dehydrogenase 3 (NAD+) beta	protein-coding	34.5	72.0	45.5	22.5	82.0	72.0
Merged-chr16-8637611-4	chr16	8637085	8638085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016881)	promoter-TSS (NM_016881)	116.0	NM_025708	66690.0	Mm.10068	NM_025708	ENSMUSG00000043140	Tmem186	2810440M13Rik|4432406C05Rik|AI648175|AW210586	transmembrane protein 186	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38522715-4	chr16	38522233	38523233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024273)	promoter-TSS (NM_024273)	-70.0	NM_024273	76916.0	Mm.132231	NM_024273	ENSMUSG00000002846	Timmdc1	2810021C21Rik|4930455C21Rik|AV135763	translocase of inner mitochondrial membrane domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8971834-4	chr3	8971330	8972330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	MLT1J1|LTR|ERVL-MaLR	-7684.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	5.0	0.0	0.5	3.0	0.0	0.0
Merged-chr7-92636675-1	chr7	92636175	92637175	+	1000.0	f0_balb.idr	5' UTR (NM_028665, exon 1 of 12)	5' UTR (NM_028665, exon 1 of 12)	467.0	NM_028665	73845.0	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-20921234-4	chr12	20920684	20921684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-105405.0	NR_015521	69513.0	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25282512-4	chr15	25282013	25283013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131251.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56566190-4	chr19	56565664	56566664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025811, intron 2 of 10)	intron (NM_025811, intron 2 of 10)	17903.0	NM_025811	66866.0	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21947574-4	chr16	21947071	21948071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025693)	promoter-TSS (NM_025693)	-19.0	NR_037773	66664.0	Mm.46480	NM_025693	ENSMUSG00000022856	Tmem41a	2900010K02Rik|5730578N08Rik	transmembrane protein 41a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85705519-7	chr12	85705014	85706014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016767, intron 2 of 2)	intron (NM_016767, intron 2 of 2)	18794.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81864014-1	chr15	81863514	81864514	+	1000.0	f1_balb.idr	TTS (NM_026737)	TTS (NM_026737)	-5688.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	7.0	3.5	4.5	12.5	7.0	5.0
Merged-chr2-167742678-4	chr2	167742175	167743175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	51498.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84188651-4	chr17	84188156	84189156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001806)	promoter-TSS (NM_001001806)	-709.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80110844-2	chr12	80110328	80111328	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007564, intron 1 of 1)	intron (NM_007564, intron 1 of 1)	2185.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	11.0	1.0	3.5	8.5	8.0	4.5
Merged-chr14-21813431-4	chr14	21812940	21813940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18121.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	16.5	9.0	7.5	18.5	11.5	8.0
Merged-chr7-99980217-6	chr7	99979604	99980604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175388, exon 1 of 6)	exon (NM_175388, exon 1 of 6)	354.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171329277-7	chr1	171328806	171329806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357552)	promoter-TSS (NM_001357552)	161.0	NM_011615	21945.0	Mm.270139	NM_011615	ENSMUSG00000013973	Dedd	CASP8IP1|DEFT|Dedpro1|FLDED1|KE05	death effector domain-containing	protein-coding	114.0	274.0	213.5	82.5	215.5	202.0
Merged-chr13-52596889-4	chr13	52596391	52597391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011518)	promoter-TSS (NM_011518)	9.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76330183-4	chr14	76329701	76330701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78739.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25132754-2	chr8	25132254	25133254	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4A|LTR|ERVK	26479.0	NR_106187	102467006.0		NR_106187	ENSMUSG00000099142	Mir8108	Gm27484|mmu-mir-8108	microRNA 8108	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7055023-2	chr19	7054523	7055523	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-1745.0	NM_134147	107227.0	Mm.439977	NM_134147	ENSMUSG00000036278	Macrod1	AI604841|AW743046|D930010J01Rik|Lrp16	MACRO domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129261329-4	chr2	129260820	129261820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35892.0	NM_181589	70466.0	Mm.45785	NM_181589	ENSMUSG00000048327	Ckap2l	2010016H04Rik|2610318C08Rik|AV070319|radmis|rdm	cytoskeleton associated protein 2-like	protein-coding	1.5	3.0	18.5	4.0	10.5	9.5
Merged-chr13-29292965-4	chr13	29292447	29293447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131896, intron 15 of 16)	RSINE1|SINE|B4	276692.0	NR_045075	77920.0	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122581885-4	chr2	122581385	122582385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	29392.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	9.0	25.0	9.5	26.5	45.5	14.0
Merged-chr18-65694921-3	chr18	65694418	65695418	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3350.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	96.0	209.5	152.0	96.0	195.0	152.5
Merged-chr19-53277193-2	chr19	53276693	53277693	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21988.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106630621-2	chr1	106630121	106631121	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	83669.0	NM_009741	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16059920-4	chr1	16059431	16060431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33394.0	NM_001243238	75799.0	Mm.78557	NM_001243238	ENSMUSG00000067795	4930444P10Rik	-	RIKEN cDNA 4930444P10 gene	protein-coding	40.0	48.0	35.5	8.0	44.5	32.5
Merged-chr7-101548993-4	chr7	101548498	101549498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6804.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	103.0	339.5	155.5	89.5	149.5	108.0
Merged-chr1-181233487-2	chr1	181232987	181233987	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-21509.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181274913-4	chr2	181274431	181275431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198169, intron 2 of 9)	MTEb|LTR|ERVL-MaLR	13035.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25091300-4	chr8	25090807	25091807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 1 of 11)	intron (NM_031257, intron 1 of 11)	10504.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37018661-4	chr19	37018155	37019155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	92576.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	3.5	23.5	3.5	4.0	26.0	3.0
Merged-chr5-99380400-4	chr5	99379906	99380906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-127479.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-39944029-4	chr15	39943512	39944512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172814)	promoter-TSS (NM_172814)	-18.0	NM_172814	239393.0	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91735404-2	chr12	91734904	91735904	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 3 of 6)	MLT1D|LTR|ERVL-MaLR	51032.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7222752-4	chr9	7222253	7223253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38248.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119911062-4	chr8	119910494	119911494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009462, intron 1 of 13)	CpG	634.0	NM_001310630	22224.0	Mm.256910	NM_009462	ENSMUSG00000031826	Usp10	2610014N07Rik|UBPO|Uchrp|mKIAA0190	ubiquitin specific peptidase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-55722456-4	chr17	55721957	55722957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR25C|LTR|ERVK	-9821.0	NR_151542	72836.0	Mm.177073	NM_028370	ENSMUSG00000024174	Pot1b	2810458H16Rik	protection of telomeres 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-72980493-4	chr2	72980006	72981006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001018042)	promoter-TSS (NM_001018042)	-60.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6453952-5	chr4	6453435	6454435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 1 of 30)	CpG	336.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95888383-4	chr13	95887854	95888854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	B1F|SINE|Alu	3568.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	120.5	289.0	228.5	97.0	160.5	128.0
Merged-chr7-80044430-4	chr7	80043907	80044907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	18179.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	12.5	72.0	48.5	13.5	58.5	56.0
Merged-chr19-34583420-4	chr19	34582898	34583898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010501)	promoter-TSS (NM_010501)	-131.0	NM_010501	15959.0	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53668560-1	chr15	53668060	53669060	+	1000.0	f0_balb.idr	intron (NM_177225, intron 3 of 4)	MLT1K|LTR|ERVL-MaLR	-54281.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72318986-4	chr8	72318479	72319479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008452)	promoter-TSS (NM_008452)	-83.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	63.5	167.0	99.0	45.5	143.0	96.5
Merged-chr5-117871729-4	chr5	117871225	117872225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 1 of 27)	intron (NM_008712, intron 1 of 27)	4886.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101357527-4	chr4	101357037	101358037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040640, intron 1 of 3)	intron (NR_040640, intron 1 of 3)	-1289.0	NR_040708	77866.0	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	14.5	51.0	42.0	25.0	55.5	35.5
Merged-chr3-133583840-4	chr3	133583342	133584342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39452.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29648419-4	chr19	29647911	29648911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081213)	promoter-TSS (NM_001081213)	4.0	NM_001081213	226090.0	Mm.267131	NM_001081213	ENSMUSG00000046324	Ermp1	D19Ertd410e|D19Wsu12e|Fxna|b2b2633Clo|mKIAA1815	endoplasmic reticulum metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-16584243-4	chr12	16583752	16584752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355598, intron 1 of 20)	intron (NM_001355598, intron 1 of 20)	5518.0	NM_015763	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	12.0	5.0	5.0	23.0	47.5	13.0
Merged-chr8-70594308-4	chr8	70593811	70594811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023627)	promoter-TSS (NM_023627)	-170.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	5.0	10.0	5.5	4.5	6.0	9.0
Merged-chr12-51968120-4	chr12	51967644	51968644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177171, intron 1 of 35)	intron (NM_177171, intron 1 of 35)	3177.0	NM_177171	320487.0	Mm.131941	NM_177171	ENSMUSG00000035181	Heatr5a	C230081H03Rik|D930036F22Rik|mKIAA1316	HEAT repeat containing 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12435138-7	chr19	12434654	12435654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7249.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	74.5	176.5	148.0	66.5	197.5	170.5
Merged-chr9-107634661-2	chr9	107634161	107635161	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008138, intron 1 of 8)	intron (NM_008138, intron 1 of 8)	681.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	4.0	25.5	9.5	15.0	26.5	25.5
Merged-chr5-43235314-4	chr5	43234810	43235810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028417)	promoter-TSS (NR_028417)	44.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82015324-4	chr11	82014827	82015827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-20250.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135981698-4	chr4	135981208	135982208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025411, intron 3 of 5)	L1MA5|LINE|L1	5536.0	NM_025411	66193.0	Mm.29131	NM_025411	ENSMUSG00000028669	Pithd1	1110049F12Rik|AA408179|Trp26	PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1	protein-coding	51.5	193.0	107.5	63.5	220.0	107.5
Merged-chr7-98809592-4	chr7	98809096	98810096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-25516.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	8.5	12.5	7.5	5.0	19.5	11.0
Merged-chr1-138158591-4	chr1	138158122	138159122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	16504.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-48976500-4	chr13	48975997	48976997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8385.0	NR_015601	68128.0	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-137694542-4	chr6	137694020	137695020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR24|LTR|ERV1	-40562.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18343988-4	chr16	18343501	18344501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138583)	promoter-TSS (NM_138583)	-69.0	NM_001359111	27883.0	Mm.265990	NM_138583	ENSMUSG00000013539	Tango2	D16H22S680E|T10	transport and golgi organization 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12972214-4	chr18	12971698	12972698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008378, exon 1 of 11)	5' UTR (NM_008378, exon 1 of 11)	275.0	NM_008378	16210.0	Mm.8154	NM_008378	ENSMUSG00000024423	Impact	E430016J11Rik	impact, RWD domain protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4260723-4	chr19	4260224	4261224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001356620)	TTS (NM_001356620)	3154.0	NR_105951	102465595.0		NR_105951	ENSMUSG00000099290	Mir6985	Gm27719|mmu-mir-6985	microRNA 6985	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25481527-4	chr9	25481037	25482037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026189)	promoter-TSS (NM_026189)	-60.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180400716-2	chr1	180400216	180401216	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-70167.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7494373-4	chr19	7493866	7494866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146091)	promoter-TSS (NM_146091)	-72.0	NM_146091	109168.0	Mm.264016	NM_146091	ENSMUSG00000024759	Atl3	4633402C03Rik|5730596K20Rik|AI465397|AW228836	atlastin GTPase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105981464-4	chr1	105980970	105981970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151625, intron 2 of 2)	intron (NR_151625, intron 2 of 2)	8812.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	21.0	87.5	64.5	33.5	69.5	70.5
Merged-chr4-58613242-4	chr4	58612744	58613744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59753.0	NM_010336	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	16.0	11.5	5.0	5.0	22.0	4.5
Merged-chr5-8346549-4	chr5	8346040	8347040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	21620.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71765568-2	chr2	71765068	71766068	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 3 of 3).2	intron (NR_039557, intron 3 of 3).2	-21371.0	NM_008397	16403.0	Mm.225096	NM_008397	ENSMUSG00000027111	Itga6	5033401O05Rik|AI115430|Cd49f|VLA-6	integrin alpha 6	protein-coding	0.0	17.5	3.0	4.5	2.5	3.5
Merged-chr3-34069139-4	chr3	34068637	34069637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001113188, exon 17 of 17)	3' UTR (NM_001113188, exon 17 of 17)	12217.0	NM_001026211	67713.0	Mm.274266	NM_026332	ENSMUSG00000027679	Dnajc19	1810055D05Rik|AA959924|Tim14	DnaJ heat shock protein family (Hsp40) member C19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3359286-4	chr5	3358793	3359793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	15400.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41016539-4	chr19	41016054	41017054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4876.0	NR_155302	100861913.0	Mm.35204	NR_155302		C330026H20Rik	-	RIKEN cDNA C330026H20 gene	ncRNA	11.0	8.5	12.5	20.0	43.0	28.5
Merged-chr11-118212865-4	chr11	118212372	118213372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001112700)	promoter-TSS (NM_001112700)	-130.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16311705-4	chr7	16311258	16312258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133234, intron 1 of 3)	intron (NM_133234, intron 1 of 3)	2175.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	4.5	12.0	8.0	5.0	12.0	8.0
Merged-chr12-3284049-2	chr12	3283549	3284549	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 1 of 5)	PB1D11|SINE|Alu	25920.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46522269-2	chr18	46521769	46522769	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173423, intron 2 of 2)	intron (NM_173423, intron 2 of 2)	3702.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120993264-4	chr4	120992765	120993765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	-19943.0	NR_105982	102465614.0		NR_105982	ENSMUSG00000106436	Mir7015	mmu-mir-7015	microRNA 7015	ncRNA	13.5	32.5	30.5	9.0	46.5	34.5
Merged-chr3-142881522-1	chr3	142881022	142882022	+	1000.0	f0_balb.idr	promoter-TSS (NR_152127)	promoter-TSS (NR_152127)	482.0	NM_178654	109333.0	Mm.244236	NM_178654	ENSMUSG00000004591	Pkn2	6030436C20Rik|AI507382|PRK2|Prkcl2|Stk7	protein kinase N2	protein-coding	0.5	1.5	1.0	1.0	1.0	2.0
Merged-chr9-30427043-4	chr9	30426532	30427532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028874)	promoter-TSS (NM_028874)	-297.0	NM_028874	102607.0	Mm.35084	NM_028874	ENSMUSG00000031993	Snx19	3526401K03Rik|AI195321|AI848208|mKIAA0254	sorting nexin 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94179855-2	chr8	94179355	94180355	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013602, exon 2 of 3)	exon (NM_013602, exon 2 of 3)	766.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13184282-4	chr10	13183740	13184740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181470, intron 4 of 10)	intron (NM_181470, intron 4 of 10)	-6217.0	NM_029172	75122.0	Mm.159433	NM_029172	ENSMUSG00000019815	Zc2hc1b	4930519B02Rik|Fam164b	zinc finger, C2HC-type containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136808205-4	chr6	136807702	136808702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177688)	promoter-TSS (NM_177688)	-46.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	107.5	313.0	201.0	92.5	324.5	194.5
Merged-chr5-34288476-2	chr5	34287976	34288976	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001015039)	promoter-TSS (NM_001015039)	-152.0	NM_001015039	231125.0	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59744670-4	chr15	59744162	59745162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50297.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54902720-4	chr18	54902219	54903219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	87461.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129212622-1	chr6	129212122	129213122	+	1000.0	f1_balb.idr	Intergenic	Intergenic	25423.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	8.0	8.5	8.5	6.0	12.5	9.5
Merged-chr1-192092210-2	chr1	192091710	192092710	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011633, intron 1 of 9)	intron (NM_011633, intron 1 of 9)	389.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138618113-4	chr1	138617620	138618620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 1 of 9)	intron (NM_021605, intron 1 of 9)	1637.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-57571480-4	chr18	57570964	57571964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029290, intron 3 of 6)	intron (NM_029290, intron 3 of 6)	-19067.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	2.5	10.0	15.0	6.0	8.0	8.5
Merged-chr2-112379144-4	chr2	112378609	112379609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024254)	promoter-TSS (NM_024254)	-102.0	NM_024254	72425.0	Mm.425091	NM_024254	ENSMUSG00000027132	Katnbl1	2410042D21Rik|AA166487|AA473307|AI467442	katanin p80 subunit B like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-47233294-4	chr13	47232766	47233766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 4 of 7)	intron (NM_146042, intron 4 of 7)	39263.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	46.5	180.0	136.5	33.0	149.5	63.0
Merged-chr7-122138442-4	chr7	122137958	122138958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021608, intron 4 of 5)	intron (NM_021608, intron 4 of 5)	5417.0	NM_021608	59288.0	Mm.478285	NM_021608	ENSMUSG00000030868	Dctn5	4930427E12Rik|C78178|b2b315Clo	dynactin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3143325-2	chr11	3142816	3143816	+	1000.0	f0_balb.idr|f1_balb.idr	exon (NM_030207, exon 20 of 33)	exon (NM_030207, exon 20 of 33)	19295.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113482746-4	chr6	113482269	113483269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133930)	promoter-TSS (NM_133930)	-587.0	NM_133930	171508.0	Mm.41593	NM_133930	ENSMUSG00000030284	Creld1	AI843811|i11E7	cysteine-rich with EGF-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66150853-4	chr5	66150324	66151324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001291226, exon 1 of 6)	5' UTR (NM_001291226, exon 1 of 6)	154.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	138.5	215.0	197.0	128.5	236.5	163.5
Merged-chr3-52070052-4	chr3	52069539	52070539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	34967.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70111560-4	chr12	70111042	70112042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104398)	promoter-TSS (NR_104398)	87.0	NR_104398	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156863044-4	chr2	156862551	156863551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015591)	promoter-TSS (NR_015591)	-71.0	NM_026124	67388.0	Mm.29264	NM_026124	ENSMUSG00000027637	1110008F13Rik	AI316789	RIKEN cDNA 1110008F13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96351526-4	chr10	96351021	96352021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125314.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-82448317-4	chr12	82447822	82448822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 22 of 23)	intron (NM_001167983, intron 22 of 23)	136973.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-19857851-3	chr15	19857345	19858345	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	672472.0	NR_155419	102639102.0	Mm.463245	NR_155419	ENSMUSG00000115803	Gm35496	-	predicted gene, 35496	ncRNA	40.0	84.5	72.0	6.5	15.0	13.0
Merged-chr12-105436176-2	chr12	105435676	105436676	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17680.0	NM_001252508	268595.0	Mm.2388	NM_001252508	ENSMUSG00000094910	D430019H16Rik	AI852661	RIKEN cDNA D430019H16 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43201069-4	chr17	43200567	43201567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42776.0	NR_045153	545207.0	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr7-140999032-4	chr7	140998560	140999560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11684.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131025959-4	chr1	131025471	131026471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6126.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101254114-4	chr15	101253606	101254606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12740.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46963593-4	chr18	46963096	46964096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178377, intron 2 of 6)	intron (NM_178377, intron 2 of 6)	4720.0	NM_178377	69456.0	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2|Tg(Vav1-icre)A2Kio|Vav-cre|Vav-iCre|Vav1-Cre|VavCre	COMM domain containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109457018-4	chr4	109456506	109457506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013876, exon 2 of 3)	exon (NM_013876, exon 2 of 3)	19499.0	NM_013876	29864.0	Mm.392580	NM_013876	ENSMUSG00000028557	Rnf11	-	ring finger protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58516287-2	chr16	58515787	58516787	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 1 of 10)	intron (NM_001357433, intron 1 of 10)	7139.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.5	1.5	2.0	1.5	0.0	0.0
Merged-chr11-83737471-4	chr11	83736971	83737971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-9469.0	NM_183249	66107.0	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-90975149-4	chr1	90974672	90975672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5552.0	NM_008998	19329.0	Mm.279780	NM_008998	ENSMUSG00000026304	Rab17	AW413472	RAB17, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41573361-4	chr10	41572859	41573859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 36 of 47)	intron (NM_001358562, intron 36 of 47)	5343.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63372696-2	chr14	63372196	63373196	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007549)	TTS (NM_007549)	44491.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13827061-4	chr9	13826563	13827563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310721)	promoter-TSS (NM_001310721)	-10.0	NR_037622	74360.0	Mm.157212	NM_026665	ENSMUSG00000031922	Cep57	3110002L15Rik|4921510P06Rik|4931428M20Rik|AI467480|Tsp57|mKIAA0092	centrosomal protein 57	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115340804-1	chr5	115340304	115341304	+	1000.0	f1_balb.idr	promoter-TSS (NM_026933)	promoter-TSS (NM_026933)	357.0	NM_029645	384281.0	Mm.229308	NM_029645	ENSMUSG00000029536	Gatc	2010003O18Rik	glutamyl-tRNA(Gln) amidotransferase, subunit C	protein-coding	19.5	31.0	28.0	12.0	52.5	19.5
Merged-chr16-34125709-2	chr16	34125209	34126209	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 33 of 59)	intron (NM_177357, intron 33 of 59)	-158671.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-16999624-4	chr11	16999126	17000126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	9092.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-75855631-4	chr16	75855134	75856134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53632.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33089468-4	chr17	33088978	33089978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001024950, exon 1 of 4)	exon (NM_001024950, exon 1 of 4)	111.0	NM_001024950	240068.0	Mm.121392	NM_001024950	ENSMUSG00000067424	Zfp563	D10628|D130054H01|NTfin7|Zfp413	zinc finger protein 563	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-124708701-4	chr4	124708206	124709206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010213)	TTS (NM_010213)	-6155.0	NM_029157	75062.0	Mm.25779	NM_029157	ENSMUSG00000028902	Sf3a3	4930512K19Rik|60kDa	splicing factor 3a, subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-58920768-4	chr2	58920291	58921291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 10 of 13)	L1MA6|LINE|L1	165607.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95192143-4	chr10	95191627	95192627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	-46302.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45828663-4	chr9	45828155	45829155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081373)	promoter-TSS (NM_001081373)	-17.0	NM_001081373	214552.0	Mm.260103	NM_172531	ENSMUSG00000043987	Cep164	AI450905|BC027092|D030051D21|mKIAA1052	centrosomal protein 164	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114894667-4	chr6	114894158	114895158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	27163.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123044170-4	chr8	123043656	123044656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045268, exon 1 of 1)	non-coding (NR_045268, exon 1 of 1)	1581.0	NR_045268	100503178.0	Mm.294938	NR_045268	ENSMUSG00000099881	2810013P06Rik	-	RIKEN cDNA 2810013P06 gene	ncRNA	27.0	137.0	61.0	16.5	70.0	38.0
Merged-chr1-165766058-4	chr1	165765537	165766537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149310, intron 2 of 4)	intron (NR_149310, intron 2 of 4)	2279.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-43856529-4	chr10	43856037	43857037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	30630.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11456485-4	chr16	11455971	11456971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	50823.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87002901-4	chr6	87002370	87003370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177762, exon 20 of 20)	3' UTR (NM_177762, exon 20 of 20)	-6966.0	NM_001170591	56748.0	Mm.23809	NM_020045	ENSMUSG00000029993	Nfu1	0610006G17Rik|CGI-33|Hirip5	NFU1 iron-sulfur cluster scaffold	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123573005-4	chr5	123572464	123573464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029929)	promoter-TSS (NM_029929)	51.0	NM_001359513	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	6.5	2.0	8.0	5.0	6.0	3.5
Merged-chr8-72295875-4	chr8	72295368	72296368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23194.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	151.5	378.5	243.0	168.5	339.5	249.5
Merged-chr6-48593838-4	chr6	48593341	48594341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001079901)	promoter-TSS (NM_001079901)	-42.0	NM_001079905	58887.0	Mm.219183	NM_175099	ENSMUSG00000052751	Repin1	AI425994|Ap4|E430037F08Rik|Zfp-464|Zfp464	replication initiator 1	protein-coding	15.5	25.5	44.0	17.5	34.0	51.5
Merged-chr4-132959668-4	chr4	132959151	132960151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14444.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146247863-4	chr5	146247336	146248336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153599, intron 1 of 12)	L1MB8|LINE|L1	16586.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-45925565-4	chr1	45925071	45926071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016917)	promoter-TSS (NM_016917)	23.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-35813846-4	chr1	35813358	35814358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-254542.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143549185-4	chr7	143548670	143549670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008672)	promoter-TSS (NM_008672)	-50.0	NM_008672	17955.0	Mm.294625	NM_008672	ENSMUSG00000059119	Nap1l4	2810410H14Rik|AI316776|D7Wsu30e|Nap2	nucleosome assembly protein 1-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64371129-2	chr13	64370629	64371629	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009984)	promoter-TSS (NM_009984)	-609.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	58.5	101.0	93.0	46.0	136.0	92.5
Merged-chr14-120327289-4	chr14	120326783	120327783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	20831.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96727597-4	chr3	96727107	96728107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028925)	promoter-TSS (NM_028925)	-4.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-69252952-4	chr10	69252452	69253452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252637, intron 4 of 10)	intron (NM_001252637, intron 4 of 10)	39758.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25783875-2	chr7	25783375	25784375	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 4 of 19)	intron (NM_009465, intron 4 of 19)	4858.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-17024980-4	chr7	17024473	17025473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011155, intron 1 of 12)	intron (NM_011155, intron 1 of 12)	2941.0	NM_011155	19060.0	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	158.5	409.0	335.0	166.0	379.5	342.0
Merged-chr10-98915650-1	chr10	98915150	98916150	+	1000.0	f0_balb.idr	intron (NM_001359507, intron 1 of 21)	CpG	498.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-85133668-4	chr16	85133201	85134201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	40006.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71143455-4	chr17	71142915	71143915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-40117.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	6.0	14.0	21.0	3.0	17.0	19.5
Merged-chr7-44748450-4	chr7	44747954	44748954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133945)	promoter-TSS (NM_133945)	-63.0	NM_001289839	243963.0	Mm.382935	NM_178734	ENSMUSG00000048012	Zfp473	D030014N22Rik|Znf473|zfp-100	zinc finger protein 473	protein-coding	32.0	49.5	47.5	32.0	50.5	47.0
Merged-chr17-24737671-4	chr17	24737170	24738170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013759, intron 1 of 4)	intron (NM_013759, intron 1 of 4)	1077.0	NM_001346668	27361.0	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	46.0	150.0	70.0	41.0	89.0	78.0
Merged-chr4-10874038-4	chr4	10873506	10874506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026005)	promoter-TSS (NM_026005)	-492.0	NM_026005	67157.0	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	106.0	210.5	133.5	88.5	147.0	103.5
Merged-chr9-57874337-4	chr9	57873836	57874836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36650.0	NM_027086	69459.0	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80856679-2	chr10	80856179	80857179	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175195, intron 1 of 14)	intron (NM_175195, intron 1 of 14)	1404.0	NM_175195	73218.0	Mm.3285	NM_175195	ENSMUSG00000035206	Sppl2b	3110056O03Rik|AW550292|PSL1	signal peptide peptidase like 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29489722-4	chr17	29489224	29490224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1321.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	58.5	114.0	76.5	58.5	179.0	99.5
Merged-chr4-135898571-4	chr4	135898066	135899066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009924, intron 1 of 1)	MIRb|SINE|MIR	3377.0	NM_009924	12802.0	Mm.297251	NM_009924	ENSMUSG00000062585	Cnr2	CB-2|CB2|CB2-R	cannabinoid receptor 2 (macrophage)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105568272-4	chr5	105567787	105568787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	48816.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43765437-4	chr13	43764935	43765935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19677.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	16.5	26.0	35.5	7.0	42.5	37.5
Merged-chr2-136936598-3	chr2	136936097	136937097	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355671, intron 2 of 6)	intron (NM_001355671, intron 2 of 6)	37246.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191193807-4	chr1	191193261	191194261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10428.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30638321-4	chr5	30637843	30638843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-9593.0	NR_049199	100885838.0		NR_049199	ENSMUSG00000093710	Mir5625	Gm23930|mmu-mir-5625	microRNA 5625	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39583389-4	chr1	39582898	39583898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb-int|LTR|ERVL-MaLR	-6051.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5088423-4	chr19	5087916	5088916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026553)	promoter-TSS (NM_026553)	-122.0	NM_026553	68090.0	Mm.44202	NM_026553	ENSMUSG00000024875	Yif1a	5330422J23Rik|54TM|Yif1|Yif1p	Yip1 interacting factor homolog A (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-66998972-4	chr10	66998461	66999461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6114.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32539390-2	chr11	32538890	32539890	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	RMER5|LTR|ERV1	6124.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	37.5	97.5	67.5	40.5	54.0	84.5
Merged-chr1-36312005-2	chr1	36311505	36312505	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290726, intron 2 of 7)	intron (NM_001290726, intron 2 of 7)	4272.0	NM_001172205	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136072042-1	chr4	136071542	136072542	+	1000.0	f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-18671.0	NM_025919	67025.0	Mm.276856	NM_025919	ENSMUSG00000059291	Rpl11	2010203J19Rik	ribosomal protein L11	protein-coding	0.0	2.0	0.0	0.0	0.0	0.0
Merged-chr6-87010075-5	chr6	87009536	87010536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020045, intron 1 of 7)	CpG	200.0	NM_020045	56748.0	Mm.23809	NM_020045	ENSMUSG00000029993	Nfu1	0610006G17Rik|CGI-33|Hirip5	NFU1 iron-sulfur cluster scaffold	protein-coding	109.5	161.0	150.0	106.0	145.0	165.0
Merged-chr3-27109228-2	chr3	27108728	27109728	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007900, intron 22 of 24)	intron (NM_007900, intron 22 of 24)	44626.0	NM_007900	13605.0	Mm.261453	NM_007900	ENSMUSG00000027699	Ect2	AI528536	ect2 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46144251-4	chr17	46143758	46144758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029338)	promoter-TSS (NM_029338)	-60.0	NM_029338	75564.0	Mm.17993	NM_029338	ENSMUSG00000023966	Rsph9	1700027N10Rik	radial spoke head 9 homolog (Chlamydomonas)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121546339-2	chr5	121545839	121546839	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010765)	promoter-TSS (NM_010765)	-447.0	NM_010765	17165.0	Mm.272206	NM_010765	ENSMUSG00000029454	Mapkapk5	MK5|PRAK	MAP kinase-activated protein kinase 5	protein-coding	33.0	51.5	33.0	14.5	68.0	55.5
Merged-chr3-106790118-4	chr3	106789607	106790607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007651)	promoter-TSS (NM_007651)	42.0	NM_007651	12508.0	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26886234-4	chr17	26885724	26886724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-30867.0	NM_053173	16580.0	Mm.491138	NM_016761	ENSMUSG00000024301	Kifc5b	Hset|KNSL2|Kifc5a	kinesin family member C5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78177532-4	chr11	78177023	78178023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291235)	promoter-TSS (NM_001291235)	-626.0	NM_001291235	68385.0	Mm.390375	NM_026708	ENSMUSG00000019437	Tlcd1	-	TLC domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-75869497-4	chr16	75868999	75869999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023380, intron 7 of 7)	intron (NM_023380, intron 7 of 7)	39767.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11540739-3	chr11	11540246	11541246	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51480.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	8.5	23.5	11.5	0.0	6.5	3.0
Merged-chr7-110379536-4	chr7	110379037	110380037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 17 of 40)	intron (NM_177324, intron 17 of 40)	157834.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141456072-4	chr7	141455570	141456570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025802, intron 1 of 7)	intron (NM_025802, intron 1 of 7)	882.0	NM_001163689	66853.0	Mm.29998	NM_025802	ENSMUSG00000025509	Pnpla2	0610039C21Rik|1110001C14Rik|Atgl|TTS-2.2	patatin-like phospholipase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-54903090-4	chr1	54902573	54903573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	RMER19B|LTR|ERVK	23314.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25269871-4	chr7	25269361	25270361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302811, intron 1 of 20)	intron (NM_001302811, intron 1 of 20)	2162.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34850889-2	chr17	34850389	34851389	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021337)	promoter-TSS (NM_021337)	498.0	NM_001045864	27632.0	Mm.653	NM_138580	ENSMUSG00000024369	Nelfe	D17H6S45|NELF-E|RD|Rdbp	negative elongation factor complex member E, Rdbp	protein-coding	30.5	28.0	19.0	10.5	75.5	20.0
Merged-chr7-55853011-4	chr7	55852516	55853516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 1 of 30)	intron (NM_011370, intron 1 of 30)	10945.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90810506-4	chr16	90809995	90810995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029497)	promoter-TSS (NM_029497)	-82.0	NM_029497	207932.0	Mm.328688	NM_029497	ENSMUSG00000039929	Urb1	4921511H13Rik|5730405K23Rik|AA670781|AI645590|mKIAA0539	URB1 ribosome biogenesis 1 homolog (S. cerevisiae)	protein-coding	5.5	16.5	20.5	5.5	16.5	20.5
Merged-chr9-42128190-4	chr9	42127676	42128676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3879.0	NM_011436	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	3.5	22.0	5.0	6.0	7.5	10.0
Merged-chr4-32358783-4	chr4	32358254	32359254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58681.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-4319525-4	chr9	4319014	4320014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164574, intron 2 of 2)	B1F|SINE|Alu	9698.0	NM_026962	69149.0	Mm.25946	NM_026962	ENSMUSG00000025893	Kbtbd3	2200003A07Rik|Bklhd3	kelch repeat and BTB (POZ) domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-135192089-4	chr6	135191567	135192567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040296, exon 4 of 5)	non-coding (NR_040296, exon 4 of 5)	3587.0	NR_040296	100502888.0	Mm.437844	NR_040296	ENSMUSG00000108239	Gm19434	-	predicted gene, 19434	ncRNA	8.0	9.5	26.0	29.0	44.5	29.0
Merged-chr2-144264943-4	chr2	144264428	144265428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024225, intron 1 of 12)	intron (NM_024225, intron 1 of 12)	1274.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32809922-2	chr18	32809422	32810422	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045381, intron 2 of 4)	intron (NR_045381, intron 2 of 4)	-5461.0	NM_021367	53603.0	Mm.143716	NM_021367	ENSMUSG00000024379	Tslp	-	thymic stromal lymphopoietin	protein-coding	5.0	0.0	2.0	2.5	1.5	1.5
Merged-chr19-34605708-2	chr19	34605208	34606208	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2249.0	NM_001005858	667370.0	Mm.271850	NM_001005858	ENSMUSG00000062488	Ifit3b	I830012O16Rik	interferon-induced protein with tetratricopeptide repeats 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-106696078-4	chr5	106695560	106696560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026856, intron 1 of 6)	CpG	770.0	NM_026856	52397.0	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	15.0	10.5	19.5	14.5	29.5	22.0
Merged-chr4-152297215-4	chr4	152296714	152297714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037908)	promoter-TSS (NR_037908)	0.0	NR_037908	57295.0	Mm.277464	NM_133788	ENSMUSG00000039662	Icmt	1700008E11Rik|C80758|Gm13095|HSTE14|PPMT|STE14|pcCMT	isoprenylcysteine carboxyl methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64928104-4	chr1	64927611	64928611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 2 of 7)	LTR79|LTR|ERVL	28713.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9873625-4	chr13	9873130	9874130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108309.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4_GL456216_random-13910-1	chr4_GL456216_random	13410	14410	+	1000.0	f0_c57.idr	Intergenic	RLTR9E|LTR|ERVK	-1971.0	NM_001033326	236082.0	Mm.305345	NM_001033326	ENSMUSG00000063897	Dhrsx	C80877|D4Ertd296e|Dhrsxy|Pscad	dehydrogenase/reductase (SDR family) X chromosome	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37137357-4	chr19	37136877	37137877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290829, intron 3 of 9)	intron (NM_001290829, intron 3 of 9)	-36466.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21224614-4	chr11	21224111	21225111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14421.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	16.5	47.0	36.0	10.0	52.5	21.5
Merged-chr1-51509230-4	chr1	51508731	51509731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_151621)	TTS (NR_151621)	-30832.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29478495-4	chr17	29478011	29479011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-12534.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.5	26.5	10.5	0.5	28.0	8.5
Merged-chr16-70415465-2	chr16	70414965	70415965	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 3 of 15)	intron (NM_028803, intron 3 of 15)	101516.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0.0	7.0	6.5	18.0	7.5	14.0
Merged-chr7-28960175-2	chr7	28959675	28960675	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021895, intron 1 of 20)	intron (NM_021895, intron 1 of 20)	2157.0	NM_001360549	60595.0	Mm.81144	NM_021895	ENSMUSG00000054808	Actn4	C77391	actinin alpha 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121237632-2	chr11	121237132	121238132	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026272, intron 1 of 10)	intron (NM_026272, intron 1 of 10)	396.0	NM_026272	67608.0	Mm.291832	NM_026272	ENSMUSG00000000056	Narf	4430402O11Rik	nuclear prelamin A recognition factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74923617-4	chr15	74923110	74924110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31441.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	15.5	86.0	35.0	38.0	107.0	50.0
Merged-chr11-98949833-4	chr11	98949334	98950334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177302, intron 2 of 9)	intron (NM_001177302, intron 2 of 9)	10123.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-37262705-4	chr6	37262240	37263240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	37236.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-114378946-3	chr12	114378442	114379442	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	90524.0	NR_106062	102465663.0		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62553693-4	chr10	62553154	62554154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24803.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9954657-4	chr19	9954138	9955138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25962.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	7.5	2.5	4.5	8.0	3.0	9.5
Merged-chr11-38123977-4	chr11	38123469	38124469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	396076.0	NR_040295	100502917.0	Mm.61144	NR_040295		Gm12130	-	predicted gene 12130	ncRNA	0.0	2.5	6.0	1.5	2.5	2.5
Merged-chr3-30855962-8	chr3	30855547	30856547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134386)	promoter-TSS (NM_001134386)	97.0	NM_001286994	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73139953-4	chr14	73139449	73140449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-2561.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83750733-2	chr8	83750239	83751239	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9428.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	35.5	25.0	17.0	1.5	27.0	14.0
Merged-chr10-22166212-4	chr10	22165725	22166725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359809, intron 1 of 7)	intron (NM_001359809, intron 1 of 7)	-7272.0	NM_198193	379043.0	Mm.439724	NM_198193	ENSMUSG00000053219	Raet1e	-	retinoic acid early transcript 1E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106157492-2	chr8	106156992	106157992	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357319, intron 2 of 5)	intron (NM_001357319, intron 2 of 5)	7138.0	NM_001357319	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34169505-4	chr5	34168964	34169964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289804)	promoter-TSS (NM_001289804)	-40.0	NM_146159	231123.0	Mm.319286	NM_146159	ENSMUSG00000079555	Haus3	D4S43h|D5H4S43|D5H4S43E	HAUS augmin-like complex, subunit 3	protein-coding	55.5	120.5	129.0	36.5	119.5	68.5
Merged-chr13-54589022-2	chr13	54588522	54589522	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178605, intron 2 of 4)	intron (NM_178605, intron 2 of 4)	1052.0	NM_178605	28126.0	Mm.439993	NM_178605	ENSMUSG00000025869	Nop16	AA409471|D13Wsu177e	NOP16 nucleolar protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46553240-2	chr18	46552740	46553740	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21293.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54482692-2	chr18	54482192	54483192	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60397.0	NR_040338	77433.0	Mm.159919	NR_040338		Redrum	9430076G02Rik	Redrum, erythroid developmental long intergenic non-protein coding transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-23135053-4	chr19	23134540	23135540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6186.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	2.0	17.5	8.5	2.0	13.0	6.0
Merged-chr8-26961910-4	chr8	26961391	26962391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15445.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-92741566-4	chr7	92741066	92742066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029494)	promoter-TSS (NM_029494)	-107.0	NR_015510	666737.0	Mm.473620	NR_015510	ENSMUSG00000074024	4632427E13Rik	AU015482	RIKEN cDNA 4632427E13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-48965777-4	chr13	48965294	48966294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033268, intron 1 of 17)	intron (NM_001033268, intron 1 of 17)	2034.0	NM_001033268	218236.0	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27761929-4	chr2	27761411	27762411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011305, exon 10 of 10)	3' UTR (NM_011305, exon 10 of 10)	51328.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129320175-4	chr2	129319672	129320672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10200.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	19.5	98.0	56.5	41.5	90.5	49.0
Merged-chr4-83323776-1	chr4	83323276	83324276	+	1000.0	f0_balb.idr	intron (NM_027238, intron 1 of 19)	CpG	413.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	36.5	62.5	92.5	29.5	103.5	88.5
Merged-chr8-41019454-4	chr8	41018932	41019932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015457, intron 1 of 2)	intron (NR_015457, intron 1 of 2)	1964.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	56.5	97.5	43.5	24.5	65.0	49.0
Merged-chr6-54956568-4	chr6	54956086	54957086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172729, intron 1 of 11)	intron (NM_172729, intron 1 of 11)	15075.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	30.0	49.5	20.0	9.0	19.0	16.0
Merged-chr3-131272096-4	chr3	131271600	131272600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008212)	promoter-TSS (NM_008212)	1.0	NM_008212	15107.0	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41303257-4	chr10	41302754	41303754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133999)	promoter-TSS (NM_133999)	-13.0	NM_133999	103199.0	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122432540-4	chr8	122432052	122433052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301284, intron 1 of 4)	intron (NM_001301284, intron 1 of 4)	388.0	NM_001301284	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	14.0	60.5	32.5	18.5	59.0	32.5
Merged-chr7-16044873-2	chr7	16044373	16045373	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26972.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	8.5	35.0	17.0	10.5	50.0	24.5
Merged-chr2-118554888-1	chr2	118554388	118555388	+	1000.0	f0_c57.idr	Intergenic	IAPLTR2_Mm|LTR|ERVK	-5202.0	NM_138313	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	0.0	1.0	0.0	6.0	0.0	5.5
Merged-chr11-114168385-3	chr11	114167907	114168907	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29851.0	NR_045930	73536.0	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4489276-4	chr16	4488785	4489785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361474, intron 3 of 5)	intron (NM_001361474, intron 3 of 5)	33790.0	NM_001347162	106393.0	Mm.35811	NM_175347	ENSMUSG00000022519	Srl	9830004M20Rik|AW108387|sar	sarcalumenin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97280699-4	chr6	97280216	97281216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27936.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.5	31.5	12.0	9.5	18.0	5.5
Merged-chr13-113486652-4	chr13	113486159	113487159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 1 of 6)	intron (NR_045501, intron 1 of 6)	16185.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62651337-4	chr10	62650831	62651831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053183)	promoter-TSS (NM_053183)	-113.0	NM_053183	94213.0	Mm.114116	NM_053183	ENSMUSG00000020076	Ddx50	4933429B04Rik|8430408E17Rik|GU2|RH-II	DEAD (Asp-Glu-Ala-Asp) box polypeptide 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27630756-4	chr15	27630260	27631260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013792)	promoter-TSS (NM_001013792)	-67.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-58568710-2	chr2	58568210	58569210	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289660, intron 1 of 7)	intron (NM_001289660, intron 1 of 7)	1376.0	NM_001289660	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-8870623-2	chr13	8870135	8871135	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001039388, intron 1 of 13)	intron (NM_001039388, intron 1 of 13)	409.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39196743-4	chr18	39196227	39197227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 11 of 21)	intron (NM_001361073, intron 11 of 21)	203582.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72350226-4	chr8	72349727	72350727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007944, intron 22 of 23)	intron (NM_007944, intron 22 of 23)	31165.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	11.5	18.5	20.0	12.0	51.5	34.0
Merged-chr5-52783061-4	chr5	52782540	52783540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308144)	promoter-TSS (NM_001308144)	-15.0	NM_001308144	78796.0	Mm.266886	NM_030185	ENSMUSG00000029179	Zcchc4	4930449I23Rik	zinc finger, CCHC domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47506678-2	chr17	47506178	47507178	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	1627.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149774287-4	chr4	149773773	149774773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027460)	promoter-TSS (NM_027460)	-6.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	62.5	192.0	137.0	69.0	212.5	129.0
Merged-chr10-34131542-4	chr10	34131044	34132044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3572.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115692980-4	chr11	115692482	115693482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	6552.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6408938-4	chr19	6408452	6409452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011242, exon 12 of 17)	exon (NM_011242, exon 12 of 17)	8369.0	NM_011242	19395.0	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59650628-4	chr15	59650134	59651134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144549, intron 1 of 2)	intron (NM_144549, intron 1 of 2)	1980.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32208694-4	chr12	32208199	32209199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146201)	promoter-TSS (NM_001146201)	-50.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	80.0	138.0	108.5	63.5	80.5	67.0
Merged-chr3-96262382-4	chr3	96261899	96262899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_033596)	TTS (NM_033596)	918.0	NM_033596	97122.0	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	104.0	345.0	168.5	66.0	172.0	99.0
Merged-chr9-44113604-4	chr9	44113091	44114091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153762)	promoter-TSS (NM_153762)	-540.0	NM_153762	213211.0	Mm.392032	NM_153762	ENSMUSG00000053128	Rnf26	8030450I18Rik	ring finger protein 26	protein-coding	0.0	2.0	6.0	4.0	0.0	0.5
Merged-chr5-17876858-4	chr5	17876367	17877367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	L2|LINE|L2	12092.0	NM_001159558	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84184181-4	chr15	84183665	84184665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054088, intron 7 of 7)	intron (NM_054088, intron 7 of 7)	-8068.0	NM_178614	68653.0	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67205113-4	chr10	67204602	67205602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 3 of 25)	intron (NM_207221, intron 3 of 25)	19352.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3676495-4	chr8	3676021	3677021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025701)	promoter-TSS (NM_025701)	44.0	NM_025701	66682.0	Mm.29090	NM_025701	ENSMUSG00000040236	Trappc5	4021401A16Rik|TRS31	trafficking protein particle complex 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-41207960-3	chr9	41207447	41208447	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040392, intron 1 of 4)	intron (NR_040392, intron 1 of 4)	1792.0	NR_040392	78500.0	Mm.275715	NR_040392	ENSMUSG00000100837	1700063D05Rik	-	RIKEN cDNA 1700063D05 gene	ncRNA	88.5	280.5	190.0	74.5	197.5	128.0
Merged-chr8-13757668-4	chr8	13757160	13758160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357247)	promoter-TSS (NM_001357247)	4.0	NM_001357247	69957.0	Mm.182412	NM_027276	ENSMUSG00000038416	Cdc16	2700071J12Rik|2810431D22Rik|APC6	CDC16 cell division cycle 16	protein-coding	3.5	7.0	1.0	0.5	6.0	3.5
Merged-chr7-106617130-3	chr7	106616620	106617620	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277179, intron 1 of 2)	MMVL30-int|LTR|ERV1	27525.0	NM_001277179	434223.0	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46521050-2	chr19	46520550	46521550	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	19402.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-4756577-4	chr13	4756080	4757080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-147416.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	6.0	11.5	16.0	8.0	22.5	31.0
Merged-chr8-120120758-2	chr8	120120258	120121258	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172286, intron 1 of 12)	RLTR31D_MM|LTR|ERVK	6606.0	NM_001163761	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46398424-2	chr19	46397924	46398924	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 1 of 11)	intron (NM_001025391, intron 1 of 11)	1528.0	NM_015752	24069.0	Mm.41210	NM_015752	ENSMUSG00000025231	Sufu	Su(fu)	SUFU negative regulator of hedgehog signaling	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97821070-4	chr15	97820578	97821578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204280, intron 1 of 21)	URR1B|DNA|hAT-Charlie	-6215.0	NM_001204281	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123904943-4	chr4	123904442	123905442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019660)	promoter-TSS (NM_019660)	-71.0	NM_019660	56309.0	Mm.446553	NM_019660	ENSMUSG00000028647	Mycbp	5730488M09Rik|AW552132|AW742590|Amy-1	MYC binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5417853-4	chr2	5417346	5418346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030601, intron 1 of 1)	intron (NR_030601, intron 1 of 1)	38456.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30065315-4	chr16	30064839	30065839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008235)	promoter-TSS (NM_008235)	-18.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24827351-4	chr5	24826856	24827856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053075, intron 1 of 7)	intron (NM_053075, intron 1 of 7)	15005.0	NM_053075	19744.0	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31565303-4	chr15	31564802	31565802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3531.0	NM_181588	69574.0	Mm.28108	NM_181588	ENSMUSG00000022235	Cmbl	2310016A09Rik	carboxymethylenebutenolidase-like (Pseudomonas)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25378194-5	chr14	25377763	25378763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-80922.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34010008-1	chr11	34009508	34010508	+	1000.0	f0_balb.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-16815.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-107748164-3	chr7	107747658	107748658	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001205227)	TTS (NM_001205227)	9874.0	NM_001205227	320635.0	Mm.132828	NM_177216	ENSMUSG00000048065	Cyb5r2	D630003K02Rik|b5R.2	cytochrome b5 reductase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8953752-4	chr19	8953249	8954249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197993)	promoter-TSS (NM_197993)	-83.0	NM_197993	70044.0	Mm.165979	NM_197993	ENSMUSG00000071645	Tut1	2700038E08Rik|PAPD2|Rbm21|TUTase6|U6-TUTase|star-PAP	terminal uridylyl transferase 1, U6 snRNA-specific	protein-coding	29.5	117.0	74.0	14.5	121.5	129.0
Merged-chr5-120165240-4	chr5	120164726	120165726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028762, intron 21 of 23)	intron (NM_028762, intron 21 of 23)	-25963.0	NR_045793	100503427.0	Mm.446834	NR_045793	ENSMUSG00000097368	Gm10390	-	predicted gene 10390	ncRNA	9.0	7.0	8.0	4.5	35.0	28.5
Merged-chr5-24752184-4	chr5	24751660	24752660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153076, intron 3 of 3)	(AGGGGG)n|Simple_repeat|Simple_repeat	5683.0	NM_153076	214301.0	Mm.63484	NM_153076	ENSMUSG00000038135	Crygn	-	crystallin, gamma N	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127080463-2	chr2	127079963	127080963	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026678, intron 1 of 7)	RMER15|LTR|ERVL	9806.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	18.0	62.0	30.5	19.5	55.5	30.5
Merged-chr6-76268311-4	chr6	76267809	76268809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-974168.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	8.5	16.0	11.5	18.5	40.0	24.5
Merged-chr16-36665980-4	chr16	36665488	36666488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019388)	promoter-TSS (NM_019388)	89.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-149856932-4	chr1	149856435	149857435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 14 of 17)	intron (NM_008869, intron 14 of 17)	65504.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41373041-4	chr13	41372517	41373517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 2 of 7)	intron (NM_001111324, intron 2 of 7)	-14016.0	NM_017464	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60220555-4	chr11	60220025	60221025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011480, exon 1 of 19)	exon (NM_011480, exon 1 of 19)	102.0	NM_011480	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36465008-4	chr5	36464522	36465522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024478)	promoter-TSS (NM_024478)	-163.0	NM_024478	17713.0	Mm.21535	NM_024478	ENSMUSG00000029198	Grpel1	AA408748|mt-GrpE#1|mt-Grpel1	GrpE-like 1, mitochondrial	protein-coding	9.0	23.5	13.0	9.5	23.5	12.5
Merged-chr17-21532236-4	chr17	21531695	21532695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131123, intron 2 of 2)	intron (NR_131123, intron 2 of 2)	-3344.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	8.0	5.0	4.0	0.0	4.5	6.5
Merged-chr18-41949368-4	chr18	41948863	41949863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029942, intron 1 of 6)	MTD|LTR|ERVL-MaLR	1831.0	NM_029942	77619.0	Mm.30649	NM_029942	ENSMUSG00000056671	Prelid2	1700003A01Rik|C330008K14Rik	PRELI domain containing 2	protein-coding	3.5	4.5	12.0	5.5	19.0	14.0
Merged-chr4-129049216-4	chr4	129048706	129049706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9065.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122301521-4	chr3	122301031	122302031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID2|SINE|ID	-7828.0	NR_030439	791077.0		NR_030439	ENSMUSG00000076456	Mir760	Mirn760|mir-760|mmu-mir-760	microRNA 760	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-38565075-4	chr3	38564577	38565577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-80261.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57223150-4	chr16	57222654	57223654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 1 of 17)	intron (NM_026254, intron 1 of 17)	8312.0	NM_026254	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64311910-4	chr15	64311418	64312418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	755.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141147132-4	chr4	141146619	141147619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172518)	promoter-TSS (NM_172518)	-803.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36709675-4	chr16	36709183	36710183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 3 of 7)	intron (NM_001285788, intron 3 of 7)	15705.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-181888986-4	chr1	181888485	181889485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46584.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67097033-7	chr10	67096506	67097506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204915)	promoter-TSS (NM_001204915)	-18.0	NM_178606	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-63830875-4	chr5	63830391	63831391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	18396.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	102.5	154.5	135.0	91.0	166.0	140.5
Merged-chr11-100319832-4	chr11	100319353	100320353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011508)	promoter-TSS (NM_011508)	-96.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95849968-4	chr11	95849449	95850449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	6704.0	NM_001284397	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90143902-4	chr16	90143403	90144403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033476, exon 1 of 1)	non-coding (NR_033476, exon 1 of 1)	1666.0	NR_033476	100038709.0	Mm.484070	NR_033476		Gm10789	-	predicted gene 10789	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-17159205-4	chr11	17158702	17159702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024459)	promoter-TSS (NM_024459)	-96.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99147107-4	chr7	99146601	99147601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-5957.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-85148766-4	chr16	85148284	85149284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	24923.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	39.0	52.5	20.0	22.0	59.5	27.0
Merged-chr5-100040453-1	chr5	100039953	100040953	+	1000.0	f0_balb.idr	intron (NM_001163035, intron 1 of 6)	intron (NM_001163035, intron 1 of 6)	459.0	NR_027990	67870.0	Mm.11311	NM_026421	ENSMUSG00000029326	Enoph1	2310057D15Rik|BB183658|C81437	enolase-phosphatase 1	protein-coding	10.0	22.5	12.0	13.0	22.0	11.5
Merged-chr5-25498111-4	chr5	25497601	25498601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081383, intron 1 of 58)	CpG	682.0	NM_001081383	231051.0	Mm.332268	NM_001081383	ENSMUSG00000038056	Kmt2c	E330008K23Rik|HALR|Mll3|mKIAA1506	lysine (K)-specific methyltransferase 2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100184283-4	chr12	100183794	100184794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-3674.0	NR_045282	100038378.0	Mm.387075	NR_045282	ENSMUSG00000072884	Gm10433	-	predicted gene 10433	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-149464803-4	chr3	149464305	149465305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	190068.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-4663042-4	chr13	4662560	4663560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53896.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166662978-4	chr2	166662496	166663496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	50836.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-85915997-6	chr6	85915463	85916463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023160)	promoter-TSS (NM_023160)	-8.0	NM_001362065	69786.0	Mm.218434	NM_176842	ENSMUSG00000054226	Tprkb	0610033G21Rik|1810034M08Rik|Cgi-121|DRWMS1|mDRWMS1	Tp53rk binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110389058-4	chr7	110388555	110389555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 17 of 40)	intron (NM_177324, intron 17 of 40)	167352.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	8.5	5.0	8.5	4.5	4.0	6.0
Merged-chr5-43855976-4	chr5	43855463	43856463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12846.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	9.5	26.0	19.0	25.5	27.5	28.0
Merged-chr11-3332333-4	chr11	3331809	3332809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178149, intron 3 of 5)	CpG-1656	1578.0	NM_178149	216505.0	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72421588-4	chr8	72421103	72422103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289859)	promoter-TSS (NM_001289859)	-129.0	NM_001289859	13859.0	Mm.288894	NM_007944	ENSMUSG00000006276	Eps15l1	9830147J04Rik|AI593686|Eps15-rs|Eps15R	epidermal growth factor receptor pathway substrate 15-like 1	protein-coding	124.5	200.5	239.0	83.5	157.0	157.5
Merged-chr11-116026834-2	chr11	116026334	116027334	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-2330.0	NM_008211	15081.0	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	29.0	50.5	30.0	29.0	62.5	28.5
Merged-chr14-19977151-4	chr14	19976678	19977678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285911)	promoter-TSS (NM_001285911)	71.0	NM_001038637	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31436141-4	chr14	31435633	31436633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011894)	promoter-TSS (NM_011894)	-33.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113592039-4	chr5	113591532	113592532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41612.0	NM_177292	320916.0	Mm.102783	NM_177292	ENSMUSG00000063430	Wscd2	4933413A10Rik|C530024P05Rik|Gm450	WSC domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65574607-2	chr17	65574107	65575107	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-33825.0	NM_001289486	381107.0	Mm.141275	NM_001008973	ENSMUSG00000045036	Tmem232	E130009J12Rik|Gm940|Tes13-L|Tes13-S	transmembrane protein 232	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-16046873-4	chr9	16046411	16047411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 3 of 24)	intron (NM_001080814, intron 3 of 24)	-172355.0	NM_145712	244701.0	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73214443-4	chr2	73213934	73214934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025942)	promoter-TSS (NM_025942)	13.0	NM_030091	67059.0	Mm.22661	NM_025942	ENSMUSG00000027108	Ola1	2510025G09Rik|2810405J23Rik|2810409H07Rik|Gtpbp9|PTD004	Obg-like ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55843858-2	chr16	55843358	55844358	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001134457, exon 6 of 6)	3' UTR (NM_001134457, exon 6 of 6)	-5217.0	NM_001159395	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31206762-4	chr14	31206249	31207249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022656)	promoter-TSS (NM_022656)	77.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158767910-4	chr2	158767395	158768395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027975)	promoter-TSS (NM_027975)	-204.0	NM_027975	71878.0	Mm.85162	NM_027975	ENSMUSG00000027654	Fam83d	2310007D09Rik|BB104611	family with sequence similarity 83, member D	protein-coding	1.5	0.0	0.0	1.5	0.5	7.0
Merged-chr9-7572827-4	chr9	7572333	7573333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310717, intron 2 of 9)	B3|SINE|B2	1437.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61681406-4	chr14	61680853	61681853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	1020.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167773122-4	chr2	167772616	167773616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81939.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46834383-4	chr11	46833870	46834870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178759, intron 5 of 8)	intron (NM_178759, intron 5 of 8)	23571.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	81.5	179.0	187.0	129.5	216.0	153.5
Merged-chr1-138175341-4	chr1	138174835	138175835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011210)	promoter-TSS (NM_011210)	-30.0	NM_001268286	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23532644-2	chr13	23532144	23533144	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1267.0	NM_175661	319173.0	Mm.377878	NM_175661	ENSMUSG00000061991	Hist1h2af	H2a-221	histone cluster 1, H2af	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98258531-2	chr12	98258031	98259031	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008079, intron 1 of 16)	intron (NM_008079, intron 1 of 16)	928.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77982559-4	chr11	77982024	77983024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174852)	promoter-TSS (NM_174852)	-292.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-121413807-4	chr2	121413322	121414322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007952)	promoter-TSS (NM_007952)	-30.0	NM_153075	212670.0	Mm.384318	NM_153075	ENSMUSG00000033486	Catsper2	-	cation channel, sperm associated 2	protein-coding	104.0	259.5	194.0	101.5	264.0	170.0
Merged-chr17-48264015-7	chr17	48263439	48264439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172623)	promoter-TSS (NM_172623)	-356.0	NM_172623	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-48909230-2	chr7	48908730	48909730	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27634.0	NM_001360812	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40142952-4	chr4	40142468	40143468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007386)	promoter-TSS (NM_007386)	-297.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107890173-4	chr13	107889689	107890689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145456)	promoter-TSS (NM_145456)	-125.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-5496152-4	chr15	5495637	5496637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045274)	promoter-TSS (NR_045274)	-181.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31095759-4	chr3	31095274	31096274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039090, intron 1 of 6)	intron (NM_001039090, intron 1 of 6)	716.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84183606-4	chr17	84183120	84184120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001001806)	TTS (NM_001001806)	4327.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55798222-4	chr4	55797719	55798719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-265744.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13504410-4	chr8	13503903	13504903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9868.0	NM_019521	14456.0	Mm.3982	NM_019521	ENSMUSG00000031451	Gas6	Gas-6	growth arrest specific 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141168834-4	chr7	141168327	141169327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172101)	promoter-TSS (NM_001172101)	109.0	NM_145135	107702.0	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-125370293-4	chr10	125369799	125370799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-41336.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-51991824-4	chr15	51991315	51992315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009009)	promoter-TSS (NM_009009)	-55.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-66436775-4	chr18	66436272	66437272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21832.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	5.0	4.0	9.0	4.0	13.5	3.5
Merged-chr1-39594362-2	chr1	39593862	39594862	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17015.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112627122-2	chr12	112626622	112627622	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 1 of 12)	intron (NM_007421, intron 1 of 12)	7075.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21066629-4	chr19	21066131	21067131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38079.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	42.5	77.0	53.0	59.0	100.5	51.0
Merged-chr4-141998510-2	chr4	141998010	141999010	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 2 of 31)	MLT1K|LTR|ERVL-MaLR	13141.0	NM_177868	329977.0	Mm.252019	NM_028429	ENSMUSG00000051435	Fhad1	2900090M10Rik|B230311F11	forkhead-associated (FHA) phosphopeptide binding domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43553318-4	chr7	43552814	43553814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-9056.0	NM_001008549	210104.0	Mm.333821	NM_001008549	ENSMUSG00000056592	Zfp658	-	zinc finger protein 658	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-48372383-4	chr5	48371885	48372885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025755)	promoter-TSS (NM_025755)	-7.0	NM_025755	66768.0	Mm.29409	NM_025755	ENSMUSG00000029089	Pacrgl	4933428G09Rik	PARK2 co-regulated-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81108657-4	chr13	81108175	81109175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	144601.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-166204326-2	chr1	166203826	166204826	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175296, intron 10 of 11)	intron (NM_175296, intron 10 of 11)	34418.0	NM_175296	98558.0	Mm.26189	NM_175296	ENSMUSG00000040629	Mael	4933405K18Rik|AU019877	maelstrom spermatogenic transposon silencer	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129398454-4	chr2	129397963	129398963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR16|LTR|ERVK	-27324.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	0.0	5.5	6.0	0.0	2.0	2.0
Merged-chr2-16335464-4	chr2	16334971	16335971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20833.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89715394-2	chr3	89714894	89715894	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357958, exon 1 of 15)	exon (NM_001357958, exon 1 of 15)	156.0	NM_001357958	56417.0	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|DRADA|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	0.5	4.0	5.5	0.0	8.5	1.0
Merged-chr1-184563081-4	chr1	184562577	184563577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5386.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	32.5	62.0	32.0	24.5	67.5	40.0
Merged-chr6-13678073-4	chr6	13677562	13678562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175312)	promoter-TSS (NM_175312)	-96.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	3.0	9.0	5.5	1.0	16.5	3.5
Merged-chr9-14053780-2	chr9	14053280	14054280	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-222521.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-8704995-4	chr8	8704502	8705502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-14465.0	NM_176849	234023.0	Mm.251655	NM_176849	ENSMUSG00000040459	Arglu1	9430010O03Rik|C130008N12	arginine and glutamate rich 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97081609-4	chr7	97081065	97082065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010248)	promoter-TSS (NM_010248)	-186.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	43.5	126.5	73.0	66.5	119.0	80.0
Merged-chr7-45466797-4	chr7	45466291	45467291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007527, exon 1 of 6)	5' UTR (NM_007527, exon 1 of 6)	107.0	NM_007527	12028.0	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	0.0	0.0	4.5	1.0	6.0	0.0
Merged-chr10-30200569-4	chr10	30200079	30201079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001109747)	promoter-TSS (NM_001109747)	-39.0	NM_001109747	66311.0	Mm.251779	NM_001109747	ENSMUSG00000075266	Cenpw	2610036L11Rik|Cug2	centromere protein W	protein-coding	1.0	0.0	4.0	0.0	0.5	1.5
Merged-chr17-67304449-4	chr17	67303936	67304936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	50023.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	98.0	143.0	137.0	37.0	57.0	84.5
Merged-chr1-193894279-4	chr1	193893780	193894780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	328479.0	NR_040477	74942.0	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136806730-2	chr6	136806252	136807252	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1496.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	2.5	6.0	6.5	0.0	1.0	0.0
Merged-chr15-97213298-4	chr15	97212806	97213806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33801.0	NM_172293	239647.0	Mm.130036	NM_172293	ENSMUSG00000044250	Pced1b	Fam113b	PC-esterase domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84857341-3	chr8	84856833	84857833	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152751, intron 1 of 12)	intron (NR_152751, intron 1 of 12)	347.0	NM_025648	66590.0	Mm.292517	NM_025648	ENSMUSG00000003808	Farsa	0610012A19Rik|Farsla|pheRS	phenylalanyl-tRNA synthetase, alpha subunit	protein-coding	8.5	41.0	47.5	8.5	38.5	40.0
Merged-chr5-90364742-4	chr5	90364238	90365238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198010, intron 1 of 32)	intron (NM_198010, intron 1 of 32)	1447.0	NM_030886	81702.0	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	8.0	20.0	20.0	10.0	28.0	21.5
Merged-chr2-24910716-2	chr2	24910216	24911216	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001012518, intron 1 of 26)	B3A|SINE|B2	8893.0	NM_172545	77683.0	Mm.24176	NM_172545	ENSMUSG00000036893	Ehmt1	9230102N17Rik|D330003E03|Eu-HMTase1|GLP|GLP1|KMT1D|mKIAA1876	euchromatic histone methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-125784068-1	chr2	125783568	125784568	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-1198.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	0.0	0.0	0.0	0.0	5.0	0.0
Merged-chr6-133105447-6	chr6	133104933	133105933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163445, exon 1 of 1)	exon (NM_001163445, exon 1 of 1)	194.0	NR_073368	381820.0	Mm.291762	NM_001163445	ENSMUSG00000072704	Smim10l1	2700089E24Rik|AI662692	small integral membrane protein 10 like 1	protein-coding	88.5	195.5	156.0	121.0	207.0	221.0
Merged-chr19-42099621-4	chr19	42099128	42100128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145501, intron 1 of 8)	L2|LINE|L2	9193.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	39.0	53.5	35.5	59.5	127.5	112.0
Merged-chr11-70372659-4	chr11	70372166	70373166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER63A|DNA|hAT-Blackjack	-20635.0	NM_009660	11687.0	Mm.4584	NM_009660	ENSMUSG00000018924	Alox15	12-LO|12/15-LO|15-LOX|Alox12l|L-12LO	arachidonate 15-lipoxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-181151340-4	chr1	181150863	181151863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030131, intron 1 of 4)	intron (NM_030131, intron 1 of 4)	432.0	NM_030131	98417.0	Mm.38229	NM_030131	ENSMUSG00000062169	Cnih4	AI647760|AW050376|CNIH-4|D530030D03Rik|E430023H19Rik|HSPC163	cornichon family AMPA receptor auxiliary protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79206419-4	chr2	79205908	79206908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49018.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56743701-4	chr19	56743192	56744192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21320.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12459650-2	chr19	12459148	12460148	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1131.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	78.0	183.5	108.0	59.5	226.5	95.0
Merged-chr14-14804973-4	chr14	14804462	14805462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15853.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	3.5	2.0	0.0	2.0	8.0	1.5
Merged-chr11-3290054-4	chr11	3289588	3290588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253691)	promoter-TSS (NM_001253691)	-369.0	NM_001253690	56218.0	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112897629-4	chr12	112897135	112898135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD2|LINE|L1	22906.0	NR_105906	102465567.0		NR_105906	ENSMUSG00000098338	Mir6941	Gm27923|mmu-mir-6941	microRNA 6941	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125191724-4	chr6	125191205	125192205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025595)	promoter-TSS (NM_025595)	-119.0	NM_146171	68298.0	Mm.257590	NM_146171	ENSMUSG00000038252	Ncapd2	2810406C15Rik|2810465G24Rik|CAP-D2|CNAP1|mKIAA0159	non-SMC condensin I complex, subunit D2	protein-coding	103.0	122.0	123.0	66.0	133.5	109.5
Merged-chr6-71440188-4	chr6	71439733	71440733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_024288, exon 1 of 9)	5' UTR (NM_024288, exon 1 of 9)	404.0	NM_001355745	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69759103-4	chr11	69758582	69759582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291068)	promoter-TSS (NM_001291068)	-449.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	75.5	179.5	143.0	59.5	180.0	120.5
Merged-chr5-33009936-4	chr5	33009437	33010437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8879.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	32.0	70.5	70.5	47.0	58.0	56.0
Merged-chr7-89086516-2	chr7	89086016	89087016	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	252271.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127769380-4	chr3	127768895	127769895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027808, intron 1 of 13)	intron (NM_027808, intron 1 of 13)	11132.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	83.0	126.5	115.5	57.5	190.0	102.5
Merged-chr3-133544774-2	chr3	133544274	133545274	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346736)	promoter-TSS (NM_001346736)	-384.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144207092-4	chr3	144206598	144207598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1843.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41960037-4	chr10	41959527	41960527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 10 of 17)	intron (NM_001034858, intron 10 of 17)	58355.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87621567-4	chr1	87621000	87622000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	1188.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70834621-4	chr17	70834111	70835111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	12166.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-94158151-4	chr2	94157627	94158627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019657)	promoter-TSS (NM_019657)	-218.0	NM_019657	56348.0	Mm.22505	NM_019657	ENSMUSG00000027195	Hsd17b12	2610510O05Rik|AI172963|KIK-I|Kik1	hydroxysteroid (17-beta) dehydrogenase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73595293-4	chr15	73594805	73595805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357747, intron 2 of 7)	intron (NM_001357747, intron 2 of 7)	1221.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124949551-4	chr8	124949086	124950086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053207)	promoter-TSS (NM_053207)	-332.0	NM_053207	112405.0	Mm.140619	NM_053207	ENSMUSG00000031987	Egln1	AI503754|C1orf12|HIF-PH2|HPH-2|Hif-p4h-2|ORF13|Phd2|SM-20	egl-9 family hypoxia-inducible factor 1	protein-coding	3.0	0.5	1.0	0.0	4.0	0.0
Merged-chr6-89595521-4	chr6	89594945	89595945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 1 of 6)	CpG	207.0	NM_025351	66098.0	Mm.20313	NM_025351	ENSMUSG00000030086	Chchd6	0710001P09Rik|1700021B03Rik	coiled-coil-helix-coiled-coil-helix domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129893560-5	chr2	129893115	129894115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92156.0	NR_029452	654409.0	Mm.305555	NR_029452		Stk35os1	4932416H05Rik	serine/threonine kinase 35, opposite strand 1	ncRNA	57.0	67.0	34.5	21.5	80.5	42.5
Merged-chr10-119001154-4	chr10	119000656	119001656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49343.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41385172-4	chr19	41384653	41385653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031376)	promoter-TSS (NM_031376)	-83.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	17.0	27.5	30.5	7.5	13.0	12.0
Merged-chr15-102399751-4	chr15	102399221	102400221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6595.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3938684-4	chr4	3938169	3939169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019969)	promoter-TSS (NM_019969)	-219.0	NR_104355	66433.0	Mm.27406	NM_181391	ENSMUSG00000042198	Chchd7	1810049H20Rik	coiled-coil-helix-coiled-coil-helix domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64961155-8	chr5	64960651	64961651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1055.0	NM_011604	21899.0	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	3.5	11.0	5.5	4.0	8.5	2.5
Merged-chr7-121074587-4	chr7	121074079	121075079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030691)	promoter-TSS (NM_030691)	-49.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80470045-4	chr18	80469550	80470550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026295)	promoter-TSS (NM_026295)	-383.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	34.5	104.5	123.5	50.5	105.0	84.0
Merged-chr10-99268925-4	chr10	99268439	99269439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5708.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116986219-4	chr11	116985722	116986722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172948, exon 17 of 17)	3' UTR (NM_172948, exon 17 of 17)	67359.0	NM_172948	268510.0	Mm.35141	NM_172948	ENSMUSG00000043857	Mgat5b	C330018B01|GnT-IX|mGnTVB	mannoside acetylglucosaminyltransferase 5, isoenzyme B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100757678-4	chr15	100757180	100758180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4067.0	NM_021530	59033.0	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	5.0	6.5	7.5	5.0	15.0	12.0
Merged-chr13-80886128-4	chr13	80885631	80886631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153411)	promoter-TSS (NR_153411)	36.0	NR_153411	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135711067-4	chr5	135710573	135711573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 1 of 15)	intron (NM_008898, intron 1 of 15)	21928.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152914635-4	chr2	152914121	152915121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081044, intron 3 of 11)	intron (NM_001081044, intron 3 of 11)	3269.0	NM_001081044	228785.0	Mm.250604	NM_001081044	ENSMUSG00000027470	Mylk2	9830004H17Rik|BB138278	myosin, light polypeptide kinase 2, skeletal muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77348237-4	chr11	77347726	77348726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291190)	promoter-TSS (NM_001291190)	-54.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5406906-3	chr19	5406409	5407409	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015545)	promoter-TSS (NR_015545)	94.0	NR_027938	74931.0	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	18.0	18.5	24.5	0.0	3.0	5.0
Merged-chr13-74260761-4	chr13	74260246	74261246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317351, intron 2 of 9)	intron (NM_001317351, intron 2 of 9)	31585.0	NM_009644	11624.0	Mm.290446	NM_009644	ENSMUSG00000021575	Ahrr	mKIAA1234	aryl-hydrocarbon receptor repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8691112-4	chr4	8690626	8691626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277149, intron 1 of 37)	CpG	720.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118129704-4	chr7	118129204	118130204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019419)	promoter-TSS (NM_019419)	-79.0	NM_019419	54208.0	Mm.29924	NM_019419	ENSMUSG00000030654	Arl6ip1	AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24399663-4	chr7	24399177	24400177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028047)	promoter-TSS (NM_028047)	49.0	NM_028047	71997.0	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	28.5	97.5	61.5	23.5	69.0	46.0
Merged-chr11-89076422-4	chr11	89075918	89076918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033266, intron 2 of 3)	Lx9|LINE|L1	2577.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	43.5	50.0	39.0	24.0	48.0	36.5
Merged-chr15-73612236-4	chr15	73611729	73612729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033219, intron 1 of 7)	intron (NM_001033219, intron 1 of 7)	5095.0	NM_001357747	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-38844211-4	chr12	38843694	38844694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347379, intron 7 of 11)	intron (NM_001347379, intron 7 of 11)	60483.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	9.5	7.0	11.0	9.5	7.0	11.0
Merged-chr7-140954369-4	chr7	140953863	140954863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030694)	TTS (NM_030694)	1598.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-137696677-4	chr6	137696175	137697175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38407.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-94398795-2	chr2	94398295	94399295	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183106, intron 1 of 24)	intron (NM_183106, intron 1 of 24)	7894.0	NM_183106	74569.0	Mm.248504	NM_183106	ENSMUSG00000027194	Ttc17	9130020K17Rik|D2Bwg1005e	tetratricopeptide repeat domain 17	protein-coding	4.5	3.0	2.5	5.0	7.0	0.5
Merged-chr4-121215110-4	chr4	121214619	121215619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346660)	promoter-TSS (NM_001346660)	-35.0	NM_001346660	109263.0	Mm.215745	NM_001081013	ENSMUSG00000049878	Rlf	9230110M18Rik|AI195322|MommeD8	rearranged L-myc fusion sequence	protein-coding	36.5	76.5	63.0	27.5	81.5	81.5
Merged-chr11-83602165-4	chr11	83601696	83602696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 2 of 8)	L2a|LINE|L2	-9109.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31398968-5	chr6	31398552	31399552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040300)	promoter-TSS (NR_040300)	224.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84193145-4	chr12	84192655	84193655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	CpG	860.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84798290-4	chr2	84797805	84798805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019949)	promoter-TSS (NM_019949)	-523.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	0.0	3.0	3.5	0.0	0.5	0.5
Merged-chr13-5861269-4	chr13	5860796	5861796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011803)	promoter-TSS (NM_011803)	-193.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26744533-4	chr2	26744049	26745049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12829.0	NM_001359164	105244099.0		NM_001359164		Gm39773	LCN16	predicted gene, 39773	protein-coding	8.0	8.0	6.0	9.5	9.0	11.5
Merged-chr17-44130627-2	chr17	44130127	44131127	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24818.0	NM_001357996	224794.0	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47919831-1	chr19	47919331	47920331	+	1000.0	f0_balb.idr	promoter-TSS (NM_001001738)	promoter-TSS (NM_001001738)	-532.0	NM_001001738	414801.0	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	32.0	65.5	59.0	22.5	88.0	48.0
Merged-chr1-52500571-4	chr1	52500083	52501083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008667)	promoter-TSS (NM_008667)	-135.0	NM_008667	17936.0	Mm.25903	NM_008667	ENSMUSG00000002881	Nab1	-	Ngfi-A binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25279441-4	chr7	25278953	25279953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302811, intron 2 of 20)	intron (NM_001302811, intron 2 of 20)	-2726.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81372529-2	chr7	81372029	81373029	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357107)	promoter-TSS (NM_001357107)	-54.0	NM_001357107	12877.0	Mm.273122	NM_007755	ENSMUSG00000025586	Cpeb1	AU024112|Cpe-bp1|Cpeb|mCPEB|mCpeb-1	cytoplasmic polyadenylation element binding protein 1	protein-coding	0.0	2.5	0.5	0.0	0.0	0.5
Merged-chr9-116174829-1	chr9	116174329	116175329	+	1000.0	f0_balb.idr	intron (NM_009371, intron 1 of 7)	CpG	534.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	4.5	1.0	8.5	0.0	4.0	7.0
Merged-chr2-62460543-4	chr2	62460056	62461056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Plat_L3|LINE|CR1	23097.0	NM_008100	14526.0	Mm.45494	NM_008100	ENSMUSG00000000394	Gcg	GLP-1|Glu|PPG	glucagon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-82170054-4	chr12	82169512	82170512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167983)	promoter-TSS (NM_001167983)	-4.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21710546-2	chr13	21710070	21711070	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5573.0	NM_178199	319185.0		NM_178199	ENSMUSG00000094338	Hist1h2bl	H2b-291a	histone cluster 1, H2bl	protein-coding	0.0	4.0	6.0	2.0	5.5	4.5
Merged-chr3-36495643-4	chr3	36495152	36496152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11157.0	NR_040590	329623.0	Mm.490730	NR_040590	ENSMUSG00000085320	Gm11548	E330009D11	predicted gene 11548	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165405397-6	chr2	165404895	165405895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_054055)	TTS (NM_054055)	-5001.0	NM_029021	74614.0	Mm.72179	NM_029021	ENSMUSG00000027670	Ocstamp	4833422F24Rik|OC-STAMP	osteoclast stimulatory transmembrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-31956587-4	chr19	31956094	31957094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87833.0	NM_001081074	69865.0	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-70522319-4	chr18	70521826	70522826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289515, intron 6 of 9)	intron (NM_001289515, intron 6 of 9)	5540.0	NR_105775	102466152.0		NR_105775	ENSMUSG00000098721	Mir6357	Gm27333|mmu-mir-6357	microRNA 6357	ncRNA	65.5	63.5	55.5	27.5	62.0	84.5
Merged-chr5-29289903-4	chr5	29289414	29290414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020295, intron 8 of 16)	intron (NM_020295, intron 8 of 16)	88476.0	NM_020295	56873.0	Mm.41572	NM_020295	ENSMUSG00000010721	Lmbr1	1110048D14Rik|AU017641	limb region 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153214277-2	chr2	153213777	153214777	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11164.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-74684162-4	chr7	74683663	74684663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-129383.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	79.5	175.0	95.0	49.5	136.5	96.0
Merged-chr12-91711840-4	chr12	91711342	91712342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	74594.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103305304-4	chr15	103304804	103305804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	5134.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17531016-4	chr16	17530467	17531467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026909)	promoter-TSS (NM_026909)	85.0	NM_026909	69009.0	Mm.10174	NM_026909	ENSMUSG00000022760	Thap7	1810004B07Rik	THAP domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-107584115-6	chr1	107583641	107584641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5865.0	NM_011459	20725.0	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-82401748-2	chr8	82401248	82402248	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001254747, intron 1 of 7)	intron (NM_001254747, intron 1 of 7)	838.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	39.5	123.0	80.5	42.0	102.5	74.0
Merged-chr18-88952904-4	chr18	88952411	88953411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-18879.0	NM_175542	246102.0	Mm.772	NM_175542	ENSMUSG00000023066	Rttn	4921538A15Rik|AI666264|C530033I08Rik|D230040K24	rotatin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90584786-2	chr2	90584286	90585286	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4139.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65552446-4	chr9	65551979	65552979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153119)	TTS (NM_153119)	27608.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	23.5	55.0	37.0	27.0	56.5	36.5
Merged-chr8-71396702-4	chr8	71396198	71397198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181418)	promoter-TSS (NM_181418)	-157.0	NM_026636	68251.0	Mm.21749	NM_026636	ENSMUSG00000031820	Babam1	5430437P03Rik|Merit40	BRISC and BRCA1 A complex member 1	protein-coding	5.5	30.5	24.5	4.0	6.0	16.5
Merged-chr5-90504902-4	chr5	90504400	90505400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007423, intron 10 of 14)	intron (NM_007423, intron 10 of 14)	-14049.0	NM_145146	280662.0	Mm.348786	NM_145146	ENSMUSG00000029369	Afm	Alf|alpha-Alb	afamin	protein-coding	3.0	11.0	0.0	2.5	12.5	5.0
Merged-chr1-156911191-2	chr1	156910689	156911689	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357391, intron 1 of 19)	intron (NM_001357391, intron 1 of 19)	28198.0	NM_001159966	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	0.0	2.5	1.5	0.0	7.0	3.0
Merged-chr8-105966101-4	chr8	105965603	105966603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253804)	promoter-TSS (NM_001253804)	12.0	NM_001253804	20498.0	Mm.292447	NM_009195	ENSMUSG00000017765	Slc12a4	AW546649|KCC1|RBCKCC1	solute carrier family 12, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44529534-4	chr10	44529031	44530031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-70783.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60680595-2	chr13	60680095	60681095	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	78384.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	10.0	3.5	0.5	0.0	5.0	1.5
Merged-chr9-90114708-4	chr9	90114217	90115217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357780, exon 1 of 13)	5' UTR (NM_001357780, exon 1 of 13)	103.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	184.0	490.0	354.5	203.0	530.0	444.5
Merged-chr3-8981859-4	chr3	8981366	8982366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-17720.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	25.0	71.0	46.0	50.0	88.0	58.0
Merged-chr2-75829144-4	chr2	75828643	75829643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3034.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-190797221-2	chr1	190796721	190797721	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178775, intron 12 of 14)	intron (NM_178775, intron 12 of 14)	114549.0	NM_178775	320119.0	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-66953447-4	chr10	66952942	66953942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-33058.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-63499902-5	chr17	63499305	63500305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_015794, exon 1 of 9)	exon (NM_015794, exon 1 of 9)	775.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-58576700-4	chr3	58576294	58577294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001040396, exon 1 of 6)	exon (NM_001040396, exon 1 of 6)	158.0	NM_001040396	69227.0	Mm.270950	NM_001040396	ENSMUSG00000075700	Selenot	2810407C02Rik|5730408P04Rik|Selt	selenoprotein T	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3708248-1	chr7	3707748	3708748	+	1000.0	f1_balb.idr	Intergenic	Intergenic	4207.0	NM_029767	76846.0	Mm.13944	NM_029767	ENSMUSG00000006333	Rps9	3010033P07Rik|AL022771|AL022885	ribosomal protein S9	protein-coding	53.0	95.5	45.0	40.0	93.5	41.0
Merged-chr1-74505924-4	chr1	74505423	74506423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310662)	promoter-TSS (NM_001310662)	-102.0	NM_001310662	319651.0	Mm.66568	NM_176972	ENSMUSG00000033364	Usp37	4932415L06Rik|C330008N13Rik	ubiquitin specific peptidase 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62225230-4	chr18	62224733	62225733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45133.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	11.5	23.0	28.5	6.5	39.5	18.5
Merged-chr4-24865013-3	chr4	24864513	24865513	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-13889.0	NM_001033531	212390.0	Mm.409581	NM_001033531	ENSMUSG00000040387	Klhl32	6430524H05Rik|D4Ertd389e|Gm1356|mKIAA1900	kelch-like 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27418693-4	chr2	27418187	27419187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	8921.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-35177488-4	chr6	35177004	35178004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027513)	promoter-TSS (NM_027513)	-112.0	NM_027513	70699.0	Mm.261208	NM_027513	ENSMUSG00000038759	Nup205	3830404O05Rik|AV248391|mKIAA0225	nucleoporin 205	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102656731-4	chr4	102656223	102657223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66880.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	4.5	23.0	29.0	34.5	103.5	49.0
Merged-chr9-5306733-2	chr9	5306233	5307233	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009807, exon 9 of 10)	exon (NM_009807, exon 9 of 10)	-2116.0	NM_007609	12363.0	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123917323-4	chr4	123916780	123917780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017475)	promoter-TSS (NM_017475)	-153.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98881708-4	chr10	98881218	98882218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-32924.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37337508-4	chr10	37337013	37338013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-198587.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31011607-2	chr17	31011072	31012072	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177465)	TTS (NM_177465)	-46122.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	10.5	1.5	3.0	1.0	1.0	1.5
Merged-chr19-46396837-4	chr19	46396336	46397336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015752)	promoter-TSS (NM_015752)	-60.0	NM_001025391	24069.0	Mm.41210	NM_015752	ENSMUSG00000025231	Sufu	Su(fu)	SUFU negative regulator of hedgehog signaling	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94704547-2	chr8	94704047	94705047	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-8305.0	NM_026385	67801.0	Mm.279977	NM_026385	ENSMUSG00000031775	Pllp	0610010I06Rik|AV001002|Plapi|Tm4sf11	plasma membrane proteolipid	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95519094-4	chr3	95518582	95519582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	-7704.0	NM_021281	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	9.0	13.0	24.5	13.5	55.0	21.0
Merged-chr4-133494622-4	chr4	133494128	133495128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081156, intron 1 of 1)	intron (NM_001081156, intron 1 of 1)	3922.0	NM_001081156	69539.0	Mm.151594	NM_001081156	ENSMUSG00000056596	Trnp1	2300002D11Rik|Trnp	TMF1-regulated nuclear protein 1	protein-coding	27.5	70.5	39.5	49.5	98.0	54.0
Merged-chr6-120150715-4	chr6	120150218	120151218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-43105.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79224682-4	chr11	79224188	79225188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18336.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46817917-4	chr11	46817417	46818417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178759, intron 3 of 8)	intron (NM_178759, intron 3 of 8)	7118.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	92.0	163.5	156.0	85.5	258.0	198.5
Merged-chr4-102625154-4	chr4	102624634	102625634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35291.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	113.0	289.5	166.5	84.0	207.0	128.0
Merged-chr10-80039828-4	chr10	80039319	80040319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025554)	promoter-TSS (NM_025554)	-160.0	NM_025554	66420.0	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150349864-4	chr4	150349313	150350313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 1 of 22)	(TCC)n|Simple_repeat|Simple_repeat	67897.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	0.0	0.0	0.0	3.0	1.0	1.5
Merged-chr13-49318059-2	chr13	49317559	49318559	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8851.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67285400-4	chr10	67284883	67285883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001036293)	promoter-TSS (NM_001036293)	-102.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-151190272-4	chr5	151189790	151190790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163493)	promoter-TSS (NM_001163493)	-97.0	NR_153382	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86504307-4	chr1	86503763	86504763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-22294.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24936555-2	chr17	24936055	24937055	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163447, exon 1 of 32)	exon (NM_001163447, exon 1 of 32)	422.0	NM_001163448	30957.0	Mm.43081	NM_013931	ENSMUSG00000024163	Mapk8ip3	BB120594|D17Wsu15e|JIP-3|JSAP1|JSAP1a|JSAP1b|JSAP1c|JSAP1d|Jip3|Syd2|mKIAA1066	mitogen-activated protein kinase 8 interacting protein 3	protein-coding	73.0	89.0	103.5	61.0	70.5	114.0
Merged-chr14-50930109-1	chr14	50929609	50930609	+	1000.0	f1_balb.idr	intron (NM_001033271, intron 2 of 6)	intron (NM_001033271, intron 2 of 6)	740.0	NM_001310506	219024.0	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161|Pip4p1	transmembrane protein 55b	protein-coding	107.0	249.0	211.5	135.5	260.5	224.0
Merged-chr11-3160571-3	chr11	3160065	3161065	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 9 of 32)	MTD|LTR|ERVL-MaLR	32898.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-56962604-4	chr9	56962083	56963083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178374, intron 2 of 8)	intron (NM_178374, intron 2 of 8)	11659.0	NM_178374	66069.0	Mm.220984	NM_178374	ENSMUSG00000055334	Snupn	0610031A09Rik|Rnut1|Snupn1	snurportin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81544576-2	chr10	81544076	81545076	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010301, intron 1 of 6)	CpG	470.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121642678-4	chr9	121642175	121643175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011703)	promoter-TSS (NM_011703)	-41.0	NM_011703	22354.0	Mm.282007	NM_011703	ENSMUSG00000032528	Vipr1	AV071699|VIP-R1|VPAC1	vasoactive intestinal peptide receptor 1	protein-coding	0.5	6.0	2.0	3.5	6.5	0.5
Merged-chr1-91216635-4	chr1	91216131	91217131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016894, intron 2 of 2)	intron (NM_016894, intron 2 of 2)	-33673.0	NM_001355763	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139405229-4	chr5	139404750	139405750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	-1137.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	16.5	57.0	49.0	12.5	58.0	56.0
Merged-chr5-68735374-4	chr5	68734861	68735861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	606348.0	NM_175519	243043.0	Mm.234821	NM_175519	ENSMUSG00000037653	Kctd8	A730087N02Rik	potassium channel tetramerisation domain containing 8	protein-coding	3.5	6.5	5.0	3.0	4.5	5.0
Merged-chr11-85353072-4	chr11	85352550	85353550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166642)	promoter-TSS (NM_001166642)	-114.0	NM_001166642	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51276727-4	chr3	51276227	51277227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073429)	promoter-TSS (NR_073429)	-34.0	NR_073429	67746.0	Mm.441177	NR_073429	ENSMUSG00000087440	4930577N17Rik	-	RIKEN cDNA 4930577N17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91522251-4	chr16	91521745	91522745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5299.0	NR_105786	102465190.0		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	36.0	64.0	34.5	21.0	41.5	31.0
Merged-chr5-29845275-4	chr5	29844768	29845768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109332.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75094451-2	chr8	75093951	75094951	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010442, intron 1 of 4)	B1_Mus2|SINE|Alu	833.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	21.5	25.5	49.5	28.0	66.5	46.5
Merged-chr5-125346052-2	chr5	125345535	125346535	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-4941.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	3.0
Merged-chr12-79625920-4	chr12	79625416	79626416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	298817.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113038134-4	chr6	113037624	113038624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8178.0	NM_001355266	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85894556-4	chr1	85894049	85895049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022417)	promoter-TSS (NM_022417)	39.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110773343-4	chr7	110772856	110773856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009667, intron 1 of 14)	intron (NM_009667, intron 1 of 14)	752.0	NM_009667	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-46727719-2	chr13	46727219	46728219	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175749, exon 1 of 22)	5' UTR (NM_175749, exon 1 of 22)	130.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	9.0	11.5	12.0	0.0	25.5	11.5
Merged-chr2-117018662-4	chr2	117018165	117019165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102406.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	72.5	185.0	106.0	70.0	180.0	103.0
Merged-chr6-124375614-4	chr6	124375106	124376106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11120.0	NR_131162	72268.0	Mm.420740	NR_131162		1700027F06Rik	-	RIKEN cDNA 1700027F06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88654882-4	chr1	88654403	88655403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47288.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-86142707-4	chr3	86142219	86143219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016959)	promoter-TSS (NM_016959)	-51.0	NM_016959	20091.0	Mm.391785	NM_016959	ENSMUSG00000028081	Rps3a1	Rps3a	ribosomal protein S3A1	protein-coding	14.5	125.5	29.5	34.0	49.5	95.0
Merged-chr4-106678933-4	chr4	106678399	106679399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028209)	promoter-TSS (NM_028209)	45.0	NM_028209	72354.0	Mm.25806	NM_028209	ENSMUSG00000025413	Ttc4	2810002P21Rik|AF007005|L62	tetratricopeptide repeat domain 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24133387-4	chr10	24132902	24133902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15887.0	NM_001358563	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77969882-4	chr10	77969379	77970379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138301)	promoter-TSS (NM_138301)	-7.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4396092-2	chr19	4395592	4396592	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001984, intron 1 of 20)	intron (NM_001001984, intron 1 of 20)	985.0	NM_001001984	225876.0	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	38.5	58.5	50.0	58.0	91.0	60.0
Merged-chr1-156025294-4	chr1	156024788	156025788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144791, intron 4 of 6)	intron (NM_144791, intron 4 of 6)	9529.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	34.0	90.0	75.5	42.0	102.0	130.5
Merged-chr2-91938951-2	chr2	91938451	91939451	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166597, intron 15 of 31)	intron (NM_001166597, intron 15 of 31)	5979.0	NR_105965	102465604.0		NR_105965	ENSMUSG00000098651	Mir6999	Gm27673|mmu-mir-6999	microRNA 6999	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-44167879-4	chr4	44167289	44168289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175201)	promoter-TSS (NM_175201)	167.0	NM_001355181	73469.0	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-35938016-6	chr15	35937492	35938492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053071, intron 1 of 3)	CpG	254.0	NM_053071	12864.0	Mm.548	NM_053071	ENSMUSG00000014313	Cox6c	-	cytochrome c oxidase subunit VIc	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-60205213-4	chr14	60204699	60205699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001362440)	TTS (NM_001362440)	23716.0	NR_030458	751526.0		NR_030458	ENSMUSG00000076270	Mir719	Mirn719|mmu-mir-719	microRNA 719	ncRNA	15.0	14.0	11.5	3.0	7.0	17.0
Merged-chr15-81399713-4	chr15	81399216	81400216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347075)	promoter-TSS (NM_001347075)	-22.0	NM_133726	70356.0	Mm.180337	NM_133726	ENSMUSG00000022403	St13	1110007I03Rik|3110002K08Rik|AW555194|HIP|HOP|HSPABP|HSPABP1|PRO0786|SNC6|p48	suppression of tumorigenicity 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-110601520-4	chr13	110601024	110602024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	206480.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	19.5	31.5	27.5	14.0	61.0	36.0
Merged-chr17-35241935-7	chr17	35241425	35242425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252457)	promoter-TSS (NM_001252457)	179.0	NM_019693	53817.0	Mm.439827	NM_019693	ENSMUSG00000019432	Ddx39b	0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	protein-coding	119.0	283.0	161.0	120.0	255.5	181.5
Merged-chr16-75766948-4	chr16	75766450	75767450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030201)	promoter-TSS (NM_030201)	-132.0	NM_030201	110920.0	Mm.26704	NM_030201	ENSMUSG00000032932	Hspa13	1600002I10Rik|AV006182|B230217N24Rik|Stch	heat shock protein 70 family, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-57644586-4	chr11	57644107	57645107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134189)	promoter-TSS (NM_134189)	-835.0	NM_134189	171212.0	Mm.271670	NM_134189	ENSMUSG00000020520	Galnt10	AU018154|C330012K04Rik|GalNAc-T10|GalNAc-T9|Galnt9|ppGaNTase	polypeptide N-acetylgalactosaminyltransferase 10	protein-coding	29.0	49.0	58.0	14.0	47.0	30.0
Merged-chr5-130023861-3	chr5	130023361	130024361	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133768, intron 2 of 16)	intron (NM_133768, intron 2 of 16)	520.0	NM_133768	109900.0	Mm.23869	NM_133768	ENSMUSG00000025533	Asl	2510006M18Rik|ASAL	argininosuccinate lyase	protein-coding	0.0	8.5	0.0	0.0	3.5	1.0
Merged-chr12-79006820-4	chr12	79006322	79007322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178745, intron 1 of 2)	CpG	455.0	NM_178745	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122774341-4	chr10	122773854	122774854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	95039.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58214897-4	chr11	58214385	58215385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019440)	promoter-TSS (NM_019440)	-92.0	NM_019440	54396.0	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	49.0	142.0	86.5	42.0	104.0	69.5
Merged-chr9-85577556-4	chr9	85577068	85578068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	171766.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	15.5	20.0	22.0	28.5	18.5	30.0
Merged-chr6-39004097-4	chr6	39003602	39004602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 5 of 12)	CR1_Mam|LINE|CR1	63484.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71338274-4	chr2	71337774	71338774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 3 of 17)	intron (NM_172436, intron 3 of 17)	29280.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100013056-4	chr12	100012555	100013555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	MLT1A0|LTR|ERVL-MaLR	48556.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27038959-4	chr14	27038451	27039451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134437)	promoter-TSS (NM_134437)	-50.0	NM_134437	171463.0	Mm.206726	NM_027265	ENSMUSG00000040717	Il17rd	2810004A10Rik|AI428510|Sef|Sef-S	interleukin 17 receptor D	protein-coding	0.0	0.0	0.0	0.5	0.5	0.0
Merged-chr2-102977400-4	chr2	102976906	102977906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-75741.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49307246-2	chr13	49306746	49307746	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 1 of 17)	intron (NM_015759, intron 1 of 17)	1962.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96635464-4	chr3	96634928	96635928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162387)	promoter-TSS (NM_001162387)	-2.0	NM_011069	18632.0	Mm.20901	NM_011069	ENSMUSG00000028102	Pex11b	PEX11beta|Pex11pbeta	peroxisomal biogenesis factor 11 beta	protein-coding	4.5	42.0	17.5	12.5	43.5	14.5
Merged-chr16-44962991-4	chr16	44962479	44963479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027578, intron 4 of 4)	MIR3|SINE|MIR	19301.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3391886-4	chr4	3391401	3392401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERVK10D3_LTR|LTR|ERVK	-145189.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	1.5	7.5	9.0	4.0	2.0	1.5
Merged-chr2-84619341-2	chr2	84618841	84619841	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355064, intron 5 of 18)	intron (NM_001355064, intron 5 of 18)	30139.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119053823-4	chr4	119053333	119054333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_131914)	TTS (NR_131914)	15278.0	NR_131914	433751.0	Mm.224312	NR_131914	ENSMUSG00000066060	Gm12866	-	predicted gene 12866	ncRNA	6.5	0.0	9.5	1.5	4.5	5.0
Merged-chr4-32657443-1	chr4	32656943	32657943	+	1000.0	f0_balb.idr	intron (NM_001081392, intron 1 of 101)	CpG	324.0	NM_001081392	100019.0	Mm.24627	NM_133874	ENSMUSG00000058006	Mdn1	4833432B22Rik|A130070M06|AA958993|D4Abb1e|Gm135	midasin AAA ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57976087-4	chr15	57975578	57976578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9825.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35333985-4	chr7	35333482	35334482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027897)	promoter-TSS (NM_027897)	-255.0	NM_027897	52428.0	Mm.286600	NM_027897	ENSMUSG00000030494	Rhpn2	1300002E07Rik|AA536890|C85860|D7Ertd784e	rhophilin, Rho GTPase binding protein 2	protein-coding	0.0	1.0	0.0	0.0	5.5	1.0
Merged-chr9-123931915-4	chr9	123931407	123932407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36785.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15498268-4	chr17	15497777	15498777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011185)	promoter-TSS (NM_011185)	-1.0	NM_011185	19170.0	Mm.32912	NM_011185	ENSMUSG00000014769	Psmb1	AA409053|C81484|Lmpc5	proteasome (prosome, macropain) subunit, beta type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-19344049-4	chr2	19343548	19344548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126563)	promoter-TSS (NR_126563)	-269.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-13373501-4	chr1	13373012	13374012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	CpG	571.0	NM_008678	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-135276960-1	chr6	135276460	135277460	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-22624.0	NM_001080553	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	1.0	3.0	0.0	4.0	1.0	15.5
Merged-chr19-3687833-4	chr19	3687369	3688369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1305.0	NM_008513	16973.0	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-21218694-4	chr1	21218184	21219184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_029398, exon 1 of 5)	5' UTR (NM_029398, exon 1 of 5)	109.0	NM_029398	75712.0	Mm.304763	NM_029398	ENSMUSG00000025933	Tmem14a	5730496E24Rik|C85783|PTD011	transmembrane protein 14A	protein-coding	2.0	3.5	1.5	0.0	0.0	0.0
Merged-chr11-120905625-4	chr11	120905116	120906116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027745, intron 3 of 18)	intron (NM_027745, intron 3 of 18)	27256.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55212572-2	chr13	55212072	55213072	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008739, intron 1 of 22)	CpG	2790.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64810091-4	chr5	64809574	64810574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	6551.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	27.5	89.0	64.5	46.5	80.0	49.5
Merged-chr14-30620947-2	chr14	30620447	30621447	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	5261.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	12.0	17.5	14.0	15.5	8.0	9.0
Merged-chr6-70792206-4	chr6	70791713	70792713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009075)	promoter-TSS (NM_009075)	-38.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164458010-2	chr2	164457510	164458510	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2961.0	NM_025575	66460.0	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107811841-2	chr13	107811341	107812341	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	78223.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-59021053-4	chr17	59020545	59021545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_145521, intron 2 of 2)	MTE2b|LTR|ERVL-MaLR	-7723.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3343867-4	chr5	3343399	3344399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009873)	promoter-TSS (NM_009873)	6.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170436487-4	chr2	170435989	170436989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8644.0	NM_029815	76960.0	Mm.240850	NM_029815	ENSMUSG00000013523	Bcas1	2210416M21Rik|9030223A09Rik|AI841227|NABC1	breast carcinoma amplified sequence 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-178406436-4	chr1	178405900	178406900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026626, intron 1 of 6)	CpG	382.0	NM_026626	68226.0	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8627326-4	chr15	8626809	8627809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83498.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69419569-2	chr11	69419069	69420069	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5894.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72548950-4	chr8	72548464	72549464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027485)	promoter-TSS (NM_027485)	-654.0	NM_027485	70625.0	Mm.235885	NM_027485	ENSMUSG00000045248	Med26	5730493L18Rik|AI414941|AW495270|Crsp7	mediator complex subunit 26	protein-coding	20.5	83.5	74.5	40.5	75.5	94.5
Merged-chr4-3685393-4	chr4	3684868	3685868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	ORR1F|LTR|ERVL-MaLR	7247.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	96.0	190.5	140.5	38.5	138.0	78.5
Merged-chr5-145280476-4	chr5	145279979	145280979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2864.0	NM_001081431	666311.0	Mm.260773	NM_001081431	ENSMUSG00000070420	Zscan25	EG666311|Zfp498	zinc finger and SCAN domain containing 25	protein-coding	28.0	80.0	66.5	22.0	39.0	49.0
Merged-chr1-74373514-4	chr1	74373014	74374014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD1|LINE|L1	-1689.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171234722-4	chr1	171234220	171235220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010185)	promoter-TSS (NM_010185)	-371.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	33.5	38.0	37.5	25.5	50.0	36.0
Merged-chr8-25009817-4	chr8	25009310	25010310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270996, intron 1 of 21)	intron (NM_001270996, intron 1 of 21)	7112.0	NM_001270996	11502.0	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	85.5	260.5	135.0	63.5	210.5	121.5
Merged-chr18-38185500-4	chr18	38184958	38185958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24304.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11556440-2	chr8	11555940	11556940	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011919)	promoter-TSS (NM_011919)	-17.0	NM_011919	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14204436-4	chr2	14203921	14204921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081310, intron 3 of 3)	intron (NM_001081310, intron 3 of 3)	-24993.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-6144813-3	chr8	6144325	6145325	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1039538.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	22.5	38.0	6.5	8.5	1.0	3.0
Merged-chr16-31932967-4	chr16	31932465	31933465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172822)	promoter-TSS (NM_172822)	-886.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35156801-1	chr17	35156301	35157301	+	1000.0	f1_balb.idr	exon (NM_020027, exon 16 of 31)	exon (NM_020027, exon 16 of 31)	8076.0	NM_001199044	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0.0	0.0	0.0	1.0	0.0	1.0
Merged-chr8-120572269-2	chr8	120571769	120572769	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 9 of 15)	intron (NM_001145896, intron 9 of 15)	16806.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-190929122-2	chr1	190928622	190929622	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357133, intron 1 of 8)	intron (NM_001357133, intron 1 of 8)	300.0	NM_001357133	52477.0	Mm.289914	NM_021421	ENSMUSG00000026634	Angel2	2610307I21Rik|5730410O10Rik|AI845692|D1Ertd396e|D1Ertd654e	angel homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103549657-4	chr15	103549146	103550146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-11654.0	NM_021391	58200.0	Mm.143788	NM_021391	ENSMUSG00000022490	Ppp1r1a	0610038N18Rik|I-1	protein phosphatase 1, regulatory (inhibitor) subunit 1A	protein-coding	0.0	2.0	3.5	0.0	2.0	3.5
Merged-chr2-169928149-4	chr2	169927643	169928643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35044.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	7.0	14.0	8.0	7.5	11.0	2.0
Merged-chr17-73035341-6	chr17	73034807	73035807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72678.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	180.5	328.0	290.5	121.0	252.5	204.0
Merged-chr12-95747057-4	chr12	95746547	95747547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	54821.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126086223-4	chr4	126085736	126086736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172701, intron 7 of 9)	intron (NM_172701, intron 7 of 9)	-10417.0	NM_001163266	116748.0	Mm.41865	NM_138721	ENSMUSG00000050188	Lsm10	-	U7 snRNP-specific Sm-like protein LSM10	protein-coding	2.5	33.0	16.5	1.5	24.5	20.5
Merged-chr9-44407425-8	chr9	44406821	44407821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024266)	promoter-TSS (NM_024266)	227.0	NM_021789	60409.0	Mm.29814	NM_021789	ENSMUSG00000032112	Trappc4	1500017G03Rik|AI303617|HSPC172|PTD009|Sbd|Sbdn|Sdcbp2|TRS23	trafficking protein particle complex 4	protein-coding	6.0	10.0	20.0	2.5	4.5	7.5
Merged-chr13-104178774-4	chr13	104178276	104179276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361539)	promoter-TSS (NM_001361539)	-63.0	NM_001361538	81003.0	Mm.244190	NM_030731	ENSMUSG00000021712	Trim23	6330516O20Rik|AI450195|Arfd1	tripartite motif-containing 23	protein-coding	6.5	8.0	2.0	6.5	8.0	2.0
Merged-chr17-71286131-4	chr17	71285639	71286639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	24872.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	10.5	40.5	20.0	40.0	48.5	42.5
Merged-chr8-13677121-4	chr8	13676603	13677603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	CpG	484.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-106030626-4	chr12	106030127	106031127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029843, intron 1 of 13)	intron (NM_001029843, intron 1 of 13)	20364.0	NM_001029843	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	5.5	13.0	9.0	3.0	22.5	5.5
Merged-chr9-108049183-4	chr9	108048684	108049684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357682)	promoter-TSS (NM_001357682)	-80.0	NM_177910	331026.0	Mm.22554	NM_177910	ENSMUSG00000070284	Gmppb	AI317178|E430010H19	GDP-mannose pyrophosphorylase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89190883-2	chr15	89190383	89191383	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027081, exon 3 of 20)	exon (NM_027081, exon 3 of 20)	-5346.0	NR_105923	102465578.0		NR_105923	ENSMUSG00000098663	Mir6958	Gm27581|mmu-mir-6958	microRNA 6958	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88551677-4	chr17	88551166	88552166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028658, intron 7 of 21)	intron (NM_028658, intron 7 of 21)	21542.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	42.0	127.5	122.5	58.5	155.0	97.0
Merged-chr9-70261867-3	chr9	70261358	70262358	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	54508.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116476521-4	chr7	116476013	116477013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27856.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12758158-4	chr17	12757675	12758675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010515, intron 1 of 47)	intron (NM_010515, intron 1 of 47)	11531.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-5143802-6	chr15	5143307	5144307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355640)	promoter-TSS (NM_001355640)	-54.0	NM_001013367	105787.0	Mm.207004	NM_001013367	ENSMUSG00000050697	Prkaa1	AI194361|AI450832|AL024255|AMPKalpha1|C130083N04Rik	protein kinase, AMP-activated, alpha 1 catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128673984-4	chr10	128673474	128674474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173733)	promoter-TSS (NM_173733)	-56.0	NM_173733	211389.0	Mm.23352	NM_173733	ENSMUSG00000049858	Suox	SO	sulfite oxidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30552398-4	chr7	30551879	30552879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183321)	promoter-TSS (NM_183321)	-107.0	NM_183321	333193.0	Mm.34885	NM_183321	ENSMUSG00000036864	Proser3	-	proline and serine rich 3	protein-coding	48.0	81.0	60.0	22.0	32.0	25.0
Merged-chr15-75680123-2	chr15	75679623	75680623	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1323.0	NM_028404	72960.0	Mm.182401	NM_028404	ENSMUSG00000000934	Top1mt	2900052H09Rik	DNA topoisomerase 1, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118540429-4	chr2	118539916	118540916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331221, intron 3 of 3)	intron (NM_001331221, intron 3 of 3)	4171.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	181.5	305.0	185.0	73.5	152.5	130.0
Merged-chr9-13298999-4	chr9	13298506	13299506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52050.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-31082784-4	chr19	31082265	31083265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031249)	promoter-TSS (NM_031249)	-76.0	NM_031249	83410.0	Mm.22031	NM_031249	ENSMUSG00000053536	Cstf2t	64kDa|C77975|tCstF-64|tauCstF-64	cleavage stimulation factor, 3' pre-RNA subunit 2, tau	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32606415-2	chr2	32605915	32606915	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110347)	promoter-TSS (NR_110347)	-570.0	NM_001289547	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-30005740-4	chr17	30005214	30006214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151443, intron 1 of 4)	intron (NR_151443, intron 1 of 4)	675.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	12.0	31.0	19.0	12.0	35.5	23.0
Merged-chr14-19823928-4	chr14	19823442	19824442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026528)	promoter-TSS (NM_026528)	-119.0	NM_026528	68045.0	Mm.21932	NM_026528	ENSMUSG00000021807	Rtraf	2700060E02Rik	RNA transcription, translation and transport factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5490031-2	chr19	5489531	5490531	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007687)	promoter-TSS (NM_007687)	-424.0	NM_007687	12631.0	Mm.329655	NM_007687	ENSMUSG00000056201	Cfl1	AA959946|Cof	cofilin 1, non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-77286799-3	chr5	77286303	77287303	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14046.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-33447294-4	chr14	33446786	33447786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016700)	promoter-TSS (NM_016700)	-128.0	NM_016700	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125053640-4	chr8	125053153	125054153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174853)	promoter-TSS (NM_174853)	-542.0	NM_174853	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	37.5	141.0	114.5	24.5	80.0	67.0
Merged-chr3-135439354-4	chr3	135438854	135439854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030689)	promoter-TSS (NR_030689)	228.0	NM_001356597	66105.0	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104511226-2	chr3	104510773	104511773	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025067, intron 1 of 17)	intron (NM_001025067, intron 1 of 17)	645.0	NM_001025067	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	18.0	50.5	29.5	27.0	47.5	20.5
Merged-chr1-124073254-4	chr1	124072783	124073783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27724.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	8.5	39.5	13.5	7.5	42.0	13.5
Merged-chr5-122707586-4	chr5	122707107	122708107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011026)	promoter-TSS (NM_011026)	63.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	278.5	758.5	572.5	302.5	802.0	629.0
Merged-chr5-64716757-4	chr5	64716234	64717234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86789.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	25.0	25.0	10.0	16.0	24.0	21.5
Merged-chr7-81523459-4	chr7	81522962	81523962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045299)	promoter-TSS (NR_045299)	-88.0	NR_045299	100504421.0	Mm.217071	NR_045299	ENSMUSG00000097277	2900076A07Rik	WI1-1616M8.2	RIKEN cDNA 2900076A07 gene	ncRNA	95.5	166.5	151.5	68.5	76.5	108.0
Merged-chr9-96119295-4	chr9	96118810	96119810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177352)	promoter-TSS (NM_177352)	-119.0	NM_177352	235533.0	Mm.213651	NM_177352	ENSMUSG00000041440	Gk5	AV095337|C330018K18Rik|G630067D24Rik	glycerol kinase 5 (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75164051-4	chr14	75163571	75164571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	27646.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6340738-3	chr19	6340242	6341242	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291787)	promoter-TSS (NM_001291787)	-418.0	NM_009006	26412.0	Mm.25860	NM_009006	ENSMUSG00000024948	Map4k2	AI385662|BL44|GCK|Rab8ip	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100084142-4	chr15	100083631	100084631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037311, intron 3 of 3)	intron (NR_037311, intron 3 of 3)	45467.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-116581474-4	chr8	116580975	116581975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 5 of 6)	intron (NM_029441, intron 5 of 6)	76460.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-31041811-4	chr7	31041291	31042291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111073)	promoter-TSS (NM_001111073)	48.0	NM_001111073	18301.0	Mm.1870	NM_008761	ENSMUSG00000009687	Fxyd5	EF-8|Oit2|RIC	FXYD domain-containing ion transport regulator 5	protein-coding	46.5	19.0	36.0	25.5	34.0	17.5
Merged-chr5-136171687-4	chr5	136171192	136172192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1036.0	NM_178751	269717.0	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27728144-4	chr2	27727635	27728635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	17552.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38131973-4	chr16	38131486	38132486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 1 of 11)	intron (NM_001347232, intron 1 of 11)	-42726.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	95.0	180.0	109.5	121.5	266.5	254.0
Merged-chr3-144719256-4	chr3	144718733	144719733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 1 of 10)	intron (NM_001282037, intron 1 of 10)	1102.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-59345199-4	chr19	59344626	59345626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033222, exon 1 of 5)	exon (NM_001033222, exon 1 of 5)	654.0	NM_001033222	107368.0	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49468623-2	chr7	49468123	49469123	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 10 of 37)	B2_Mm2|SINE|B2	168212.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94745552-4	chr8	94745056	94746056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009137)	promoter-TSS (NM_009137)	-128.0	NM_009137	20299.0	Mm.12895	NM_009137	ENSMUSG00000031779	Ccl22	ABCD-1|DCBCK|MDC|Scya22	chemokine (C-C motif) ligand 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89835657-4	chr3	89835166	89836166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172530, intron 2 of 5)	intron (NM_172530, intron 2 of 5)	4296.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69598992-4	chr3	69598506	69599506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020026)	promoter-TSS (NM_020026)	-46.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	10.0	24.0	32.0	16.5	22.0	24.5
Merged-chr9-87171696-4	chr9	87171151	87172151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101482, intron 2 of 3)	B3|SINE|B2	22423.0	NM_001359955	244958.0	Mm.335337	NM_001101482	ENSMUSG00000042761	Mrap2	BB633055	melanocortin 2 receptor accessory protein 2	protein-coding	13.0	4.5	11.5	14.0	8.0	7.5
Merged-chr7-67257744-2	chr7	67257244	67258244	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 7 of 11)	L1M2|LINE|L1	35128.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51891940-2	chr11	51891440	51892440	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-34310.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21653727-2	chr19	21653227	21654227	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025423)	promoter-TSS (NM_025423)	418.0	NM_146096	226016.0	Mm.28796	NM_146096	ENSMUSG00000047368	Abhd17b	5730446C15Rik|Cgi67|Fam108b|Fam108b1	abhydrolase domain containing 17B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21963623-4	chr9	21963177	21964177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010149)	promoter-TSS (NM_010149)	-101.0	NM_010149	13857.0	Mm.2653	NM_010149	ENSMUSG00000006235	Epor	-	erythropoietin receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36269380-2	chr1	36268880	36269880	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153408, exon 2 of 4)	exon (NM_153408, exon 2 of 4)	4045.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135729263-5	chr1	135728828	135729828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007791, intron 1 of 5)	CpG	161.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55701009-4	chr19	55700527	55701527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 1 of 3)	intron (NR_045318, intron 1 of 3)	1177.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	56.0	131.0	86.5	45.0	152.5	140.5
Merged-chr12-88361335-4	chr12	88360833	88361833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361598, intron 1 of 9)	MER5A|DNA|hAT-Charlie	551.0	NM_001361598	72113.0	Mm.181387	NM_028105	ENSMUSG00000021044	Adck1	2610005A10Rik	aarF domain containing kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-128591469-2	chr1	128590975	128591975	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356509, intron 1 of 1)	CpG	824.0	NM_009911	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	31.5	163.0	81.0	69.5	118.5	95.5
Merged-chr6-140594072-4	chr6	140593576	140594576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_144920, exon 31 of 31)	3' UTR (NM_144920, exon 31 of 31)	-28587.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11756047-4	chr8	11755559	11756559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113517, intron 1 of 18)	Tigger17|DNA|TcMar-Tigger	-2271.0	NM_017402	54126.0	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127355434-4	chr3	127354936	127355936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327939, intron 1 of 45)	intron (NM_001327939, intron 1 of 45)	53622.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	122.0	269.5	162.5	24.5	24.0	34.5
Merged-chr18-62224903-4	chr18	62224402	62225402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44802.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	16.0	30.0	33.0	16.5	40.5	20.5
Merged-chr3-31093786-4	chr3	31093299	31094299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1259.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171223411-3	chr1	171222896	171223896	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037170)	promoter-TSS (NM_001037170)	-882.0	NM_001037170	641376.0	Mm.288374	NM_001037170	ENSMUSG00000005674	Tomm40l	-	translocase of outer mitochondrial membrane 40-like	protein-coding	24.5	65.0	65.0	15.0	37.0	23.5
Merged-chr1-177796679-4	chr1	177796161	177797161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007422)	promoter-TSS (NM_007422)	-152.0	NM_007422	11566.0	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168205444-4	chr2	168204944	168205944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310086, intron 1 of 4)	intron (NM_001310086, intron 1 of 4)	1668.0	NM_009628	11538.0	Mm.201322	NM_009628	ENSMUSG00000051149	Adnp	AA589558|mKIAA0784	activity-dependent neuroprotective protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-77280810-4	chr2	77280311	77281311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175465)	promoter-TSS (NM_175465)	-219.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54438580-4	chr11	54438056	54439056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173753, intron 1 of 17)	CpG	377.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97985878-2	chr11	97985378	97986378	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163608, intron 1 of 13)	intron (NM_001163608, intron 1 of 13)	568.0	NM_028199	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67228181-2	chr7	67227681	67228681	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175215, exon 3 of 3)	3' UTR (NM_175215, exon 3 of 3)	5565.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6951617-4	chr19	6951115	6952115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007522, exon 4 of 4)	3' UTR (NM_007522, exon 4 of 4)	9053.0	NM_001285453	12015.0	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102379165-4	chr12	102378672	102379672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 7 of 9)	intron (NM_177620, intron 7 of 9)	60641.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118363231-4	chr11	118362750	118363750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7839.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80835480-4	chr7	80834982	80835982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-26626.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	30.5	47.5	68.0	13.0	17.0	31.5
Merged-chr11-69666232-4	chr11	69665733	69666733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291058)	promoter-TSS (NM_001291058)	-63.0	NR_110993	12514.0	Mm.15819	NM_009853	ENSMUSG00000018774	Cd68	Lamp4|Scard1|gp110	CD68 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-90510135-4	chr18	90509652	90510652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198295)	promoter-TSS (NM_198295)	-2.0	NM_198295	67988.0	Mm.268041	NM_198295	ENSMUSG00000024614	Tmx3	6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830	thioredoxin-related transmembrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145238563-1	chr7	145238063	145239063	+	1000.0	f1_c57bl6.idr	intron (NR_132644, intron 24 of 24)	intron (NR_132644, intron 24 of 24)	-30444.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	0.0	0.0	2.0	0.0	3.0	1.0
Merged-chr9-65393138-2	chr9	65392638	65393638	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-1486.0	NM_028974	74492.0	Mm.159223	NM_028974	ENSMUSG00000054978	Kbtbd13	5430433E21Rik	kelch repeat and BTB (POZ) domain containing 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-61265918-2	chr19	61265418	61266418	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37500.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10433528-4	chr16	10433037	10434037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013778, intron 1 of 6)	intron (NM_001013778, intron 1 of 6)	13825.0	NM_001359069	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65605720-2	chr9	65605220	65606220	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18560.0	NM_001357527	208084.0	Mm.211032	NM_172453	ENSMUSG00000041064	Pif1	4631410M14|AI449441	PIF1 5'-to-3' DNA helicase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124897861-4	chr8	124897370	124898370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111141)	promoter-TSS (NM_001111141)	-16.0	NM_001111141	244666.0	Mm.482915	NM_001111141	ENSMUSG00000031986	Sprtn	Gm505	SprT-like N-terminal domain	protein-coding	16.0	33.5	29.0	15.0	44.5	43.0
Merged-chr2-122631491-2	chr2	122630991	122631991	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033256, exon 1 of 2)	exon (NM_001033256, exon 1 of 2)	866.0	NM_001033256	214616.0	Mm.271306	NM_001033256		Spata5l1	AV141009|C130039A10Rik	spermatogenesis associated 5-like 1	protein-coding	21.5	41.0	19.0	11.5	44.0	13.5
Merged-chr10-128781233-4	chr10	128780734	128781734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9676.0	NM_001164197	58223.0	Mm.131266	NM_021412	ENSMUSG00000025355	Mmp19	-	matrix metallopeptidase 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30950039-4	chr5	30949574	30950574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003522)	promoter-TSS (NR_003522)	8.0	NR_003522	57742.0	Mm.389615	NM_021304	ENSMUSG00000006638	Abhd1	LABH-1|LABH1	abhydrolase domain containing 1	protein-coding	6.5	20.0	10.5	17.0	27.5	9.5
Merged-chr1-136559012-4	chr1	136558523	136559523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65878.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33129508-2	chr2	33129008	33130008	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355201, intron 1 of 29)	intron (NM_001355201, intron 1 of 29)	1111.0	NM_001355200	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20632459-4	chr11	20631951	20632951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038625, intron 1 of 1)	CpG	474.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26315551-4	chr2	26315028	26316028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199146)	promoter-TSS (NM_001199146)	-5.0	NM_001199146	67839.0	Mm.266611	NM_153410	ENSMUSG00000026930	Gpsm1	1810037C22Rik|AW107933|Ags3	G-protein signalling modulator 1 (AGS3-like, C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71632127-4	chr8	71631618	71632618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 39 of 41)	intron (NM_001029873, intron 39 of 41)	-1012.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	68.5	116.5	80.5	29.0	202.5	67.5
Merged-chr4-3648444-4	chr4	3647935	3648935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8071.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	5.0	41.5	18.5	12.5	19.0	18.5
Merged-chr10-128489646-4	chr10	128489151	128490151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001114096, exon 29 of 29)	3' UTR (NM_001114096, exon 29 of 29)	3358.0	NM_001317220	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10732679-2	chr16	10732179	10733179	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177562, intron 22 of 22)	intron (NM_177562, intron 22 of 22)	52857.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36557778-13	chr1	36557248	36558248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304330)	promoter-TSS (NM_001304330)	-191.0	NM_001304329	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20698269-4	chr18	20697751	20698751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 5 of 8)	L1M4|LINE|L1	-32991.0	NR_155534	102633478.0		NR_155534	ENSMUSG00000085595	Gm16090	-	predicted gene 16090	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-119794186-6	chr7	119793712	119794712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027698)	promoter-TSS (NM_027698)	25.0	NM_001004187	434234.0	Mm.38237	NM_028129	ENSMUSG00000030924	Rexo5	2610020H08Rik	RNA exonuclease 5	protein-coding	13.0	40.5	24.5	2.0	21.0	23.5
Merged-chr13-101592549-4	chr13	101592042	101593042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100088.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-28732770-4	chr12	28732285	28733285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161410, intron 3 of 11)	intron (NM_001161410, intron 3 of 11)	17609.0	NM_001161410	217449.0	Mm.132006	NM_178811	ENSMUSG00000020628	Trappc12	CGI-87|D930014A20Rik|Ttc15	trafficking protein particle complex 12	protein-coding	56.0	112.0	132.0	57.0	128.0	83.5
Merged-chr15-50819996-3	chr15	50819481	50820481	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	69068.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0.0	1.0	1.5	0.0	7.0	3.5
Merged-chr5-120778989-2	chr5	120778489	120779489	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1330.0	NM_145226	246727.0	Mm.204887	NM_145226	ENSMUSG00000032661	Oas3	Oasl10	2'-5' oligoadenylate synthetase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83220906-2	chr11	83220406	83221406	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2670.0	NR_015519	100043636.0	Mm.295569	NR_015519	ENSMUSG00000087107	AI662270	AW496474	expressed sequence AI662270	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-28754479-4	chr13	28753959	28754959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045053, intron 3 of 8)	intron (NR_045053, intron 3 of 8)	-43586.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76626996-4	chr15	76626497	76627497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305668)	promoter-TSS (NM_001305668)	-913.0	NM_001305668	66914.0	Mm.30028	NM_025842	ENSMUSG00000115987	Vps28	1110014J03Rik|CIIA|D730005C08Rik	vacuolar protein sorting 28	protein-coding	135.0	285.5	280.0	143.0	265.0	297.0
Merged-chr7-127588670-4	chr7	127588187	127589187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172281)	promoter-TSS (NM_172281)	-11.0	NM_172281	233900.0	Mm.41122	NM_172281	ENSMUSG00000030816	Rnf40	AI848422|BRE1-B|mKIAA0661	ring finger protein 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-106722186-4	chr3	106721685	106722685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028081, intron 1 of 2)	CpG	503.0	NM_001286685	321000.0	Mm.259638	NM_028081	ENSMUSG00000056260	Lrif1	2010012G17Rik|4933421E11Rik|AI450568	ligand dependent nuclear receptor interacting factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158166772-4	chr2	158166277	158167277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20385.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111490022-4	chr13	111489543	111490543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122963)	promoter-TSS (NM_001122963)	84.0	NM_028487	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108305433-2	chr9	108304933	108305933	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016802)	promoter-TSS (NM_016802)	726.0	NM_133986	102791.0	Mm.24670	NM_133986	ENSMUSG00000039461	Tcta	9130410M22Rik|AW553637|C85065|Tctal	T cell leukemia translocation altered gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90113827-4	chr9	90113327	90114327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039147, intron 1 of 12)	intron (NM_001039147, intron 1 of 12)	993.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	296.0	554.0	423.5	301.0	566.5	448.5
Merged-chr13-58359160-4	chr13	58358655	58359655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4208.0	NM_175214	75050.0	Mm.385742	NM_175214	ENSMUSG00000060176	Kif27	4930517I18Rik	kinesin family member 27	protein-coding	3.5	20.5	23.5	4.0	11.5	27.0
Merged-chr5-99254522-2	chr5	99254022	99255022	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1595.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170867814-4	chr1	170867311	170868311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081304)	promoter-TSS (NM_001081304)	-40.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80796376-2	chr10	80795876	80796876	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_199322)	TTS (NM_199322)	2250.0	NM_023900	78670.0	Mm.41479	NM_023900	ENSMUSG00000035278	Plekhj1	9530063M10Rik	pleckstrin homology domain containing, family J member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127118011-4	chr7	127117490	127118490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133686, intron 1 of 3)	intron (NM_133686, intron 1 of 3)	4039.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142459293-4	chr5	142458801	142459801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_199068, exon 9 of 9)	3' UTR (NM_199068, exon 9 of 9)	-4630.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-144256730-4	chr5	144256206	144257206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163709, intron 2 of 2)	intron (NM_001163709, intron 2 of 2)	1481.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	68.5	116.5	108.0	55.0	148.0	76.0
Merged-chr10-9901226-4	chr10	9900738	9901738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081344)	promoter-TSS (NM_001081344)	-198.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	0.5	6.0	5.5	0.0	9.0	1.5
Merged-chr3-108911749-4	chr3	108911246	108912246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356292)	promoter-TSS (NM_001356292)	-17.0	NM_001356292	66921.0	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	117.0	262.0	230.5	95.0	274.5	237.0
Merged-chr13-110941823-4	chr13	110941348	110942348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38002.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34619663-4	chr6	34619145	34620145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 1 of 13)	intron (NM_001347100, intron 1 of 13)	21141.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	20.5	72.5	47.0	15.5	76.0	46.5
Merged-chr13-113424001-4	chr13	113423461	113424461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78883.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137861742-3	chr4	137861233	137862233	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199307)	promoter-TSS (NM_199307)	-504.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	20.0	17.0	19.0	16.5	46.5	33.5
Merged-chr2-27434364-2	chr2	27433864	27434864	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6756.0	NM_009500	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32890620-4	chr12	32890083	32891083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63206.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	79.5	219.0	98.0	89.5	139.0	126.5
Merged-chr14-30435555-4	chr14	30435056	30436056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028981, intron 1 of 46)	intron (NM_028981, intron 1 of 46)	-22480.0	NR_131095	77710.0	Mm.410773	NR_131095		4831407H17Rik	-	RIKEN cDNA 4831407H17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34922303-4	chr19	34921802	34922802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362434)	promoter-TSS (NM_001362434)	-56.0	NM_001362434	240641.0	Mm.278471	NM_183046	ENSMUSG00000024795	Kif20b	33cex|C330014J10Rik|MPP1|Mphosph1|magoo	kinesin family member 20B	protein-coding	9.5	40.0	25.5	20.0	31.0	24.0
Merged-chr6-86539616-4	chr6	86539106	86540106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037961, intron 3 of 4)	intron (NR_037961, intron 3 of 4)	12205.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	0.0	0.0	0.0	0.0	3.5	0.0
Merged-chr6-128424703-4	chr6	128424203	128425203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133927, intron 1 of 11)	CpG	207.0	NM_133927	101142.0	Mm.31345	NM_133927	ENSMUSG00000001518	Itfg2	2700050P07Rik|AI646725	integrin alpha FG-GAP repeat containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150556540-4	chr4	150556044	150557044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	95630.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-104214343-4	chr12	104213814	104214814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009251)	promoter-TSS (NM_009251)	-140.0	NM_009251	20715.0	Mm.312628	NM_009251		Serpina3g	2A2|AI119734|Spi2-1|Spi2/eb.1|Spi2A|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3G	protein-coding	5.0	51.0	14.0	15.0	55.5	13.5
Merged-chr2-167496555-4	chr2	167496056	167497056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030743, intron 1 of 7)	L3|LINE|CR1	-3682.0	NM_001356523	263876.0	Mm.34342	NM_170756	ENSMUSG00000047030	Spata2	AI504642|mKIAA0757	spermatogenesis associated 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51942414-4	chr14	51941896	51942896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19623.0	NM_001011687	497071.0	Mm.378602	NM_001011687	ENSMUSG00000068392	Rnase13	-	ribonuclease, RNase A family, 13 (non-active)	protein-coding	66.0	134.5	89.0	165.0	279.0	181.5
Merged-chr2-164857537-5	chr2	164857059	164858059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011125, intron 1 of 15)	CpG-8831	149.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	33.5	28.0	22.5	15.5	27.5	36.0
Merged-chr12-44205102-2	chr12	44204602	44205602	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013760)	TTS (NM_013760)	4966.0	NM_013760	27362.0	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78247219-4	chr17	78246708	78247708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 2 of 16)	intron (NM_015800, intron 2 of 16)	46960.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105892617-4	chr3	105892094	105893094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-11827.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	38.5	71.0	54.0	42.0	94.5	69.5
Merged-chr16-66113995-2	chr16	66113495	66114495	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	298362.0	NM_028572	73569.0	Mm.25670	NM_028572	ENSMUSG00000091243	Vgll3	1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2	vestigial like family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-63903863-4	chr7	63903365	63904365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-12992.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	6.0	11.0	5.0	3.0	7.0	1.5
Merged-chr8-111643463-4	chr8	111642962	111643962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011742)	promoter-TSS (NM_011742)	19.0	NM_011742	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	113.5	175.0	136.5	62.5	216.5	123.0
Merged-chr5-125333216-4	chr5	125332714	125333714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	7880.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	5.0	13.0	12.0	2.5	15.5	10.0
Merged-chr6-52699221-4	chr6	52698709	52699709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14520.0	NM_025816	52440.0	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96700261-4	chr15	96699737	96700737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175121)	promoter-TSS (NM_175121)	-509.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5777539-4	chr19	5777026	5778026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-6107.0	NR_155264	78891.0	Mm.276063	NM_023912	ENSMUSG00000024941	Scyl1	2810011O19Rik|C85140|Ntkl|mdf|mfd|p105	SCY1-like 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9750005-4	chr13	9749495	9750495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347474, intron 1 of 14)	intron (NM_001347474, intron 1 of 14)	13815.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43642807-4	chr7	43642307	43643307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028236, intron 4 of 5)	RLTR28|LTR|ERVL	8068.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83602858-1	chr7	83602358	83603358	+	1000.0	f1_c57bl6.idr	intron (NM_177695, intron 9 of 22)	B4A|SINE|B4	17927.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20648613-4	chr18	20648112	20649112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155534, intron 1 of 2)	MTE2a|LTR|ERVL-MaLR	-16638.0	NM_013697	22139.0	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-10887641-4	chr15	10887134	10888134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58583.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116457177-4	chr7	116456687	116457687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_A_Mam|LINE|RTE-X	-13729.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	9.5	20.5	10.0	9.5	17.5	10.0
Merged-chr7-127745462-4	chr7	127744943	127745943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1332.0	NM_172748	233902.0	Mm.259353	NM_172748	ENSMUSG00000030811	Fbxl19	6030430O11|BC059812|Fbl19	F-box and leucine-rich repeat protein 19	protein-coding	8.0	4.5	5.5	10.5	7.0	9.0
Merged-chr12-84175116-2	chr12	84174616	84175616	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	18899.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170160341-4	chr2	170159840	170160840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17665.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	10.5	14.5	11.5	10.5	14.5	11.5
Merged-chr19-6128166-4	chr19	6127625	6128625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026912)	promoter-TSS (NM_026912)	90.0	NM_026912	69024.0	Mm.329629	NM_026912	ENSMUSG00000024787	Snx15	1500032B08Rik|E130013C21Rik	sorting nexin 15	protein-coding	6.0	9.5	16.5	7.5	12.5	9.5
Merged-chr15-85634635-4	chr15	85634133	85635133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-52812.0	NM_009528	22422.0	Mm.306946	NM_009528	ENSMUSG00000022382	Wnt7b	Wnt-7b	wingless-type MMTV integration site family, member 7B	protein-coding	181.5	344.0	304.5	143.0	363.5	304.5
Merged-chr7-120206179-4	chr7	120205661	120206661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026458, intron 1 of 30)	intron (NM_026458, intron 1 of 30)	2197.0	NM_026458	67928.0	Mm.158178	NM_026458	ENSMUSG00000062017	Abca14	1700110B15Rik|4930539G24Rik	ATP-binding cassette, sub-family A (ABC1), member 14	protein-coding	70.5	118.0	125.0	129.5	155.0	203.5
Merged-chr14-40967104-4	chr14	40966566	40967566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145928)	promoter-TSS (NM_145928)	-170.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24163780-4	chr17	24163279	24164279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172935)	promoter-TSS (NM_172935)	-46.0	NM_172935	245847.0	Mm.87319	NM_172935	ENSMUSG00000036820	Amdhd2	5730457F11Rik	amidohydrolase domain containing 2	protein-coding	105.0	238.0	173.5	105.0	278.5	209.5
Merged-chr7-73559325-4	chr7	73558815	73559815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037569)	promoter-TSS (NR_037569)	-920.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114793124-4	chr11	114792624	114793624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028055, intron 2 of 2)	intron (NM_028055, intron 2 of 2)	2768.0	NM_028055	72014.0	Mm.38347	NM_028055	ENSMUSG00000000202	Btbd17	1500005I02Rik|Tango10a	BTB (POZ) domain containing 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119894839-4	chr9	119894366	119895366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026236)	promoter-TSS (NM_026236)	-29.0	NM_026236	67561.0	Mm.104789	NM_026236	ENSMUSG00000032512	Wdr48	8430408H12Rik|Uaf1|mKIAA1449	WD repeat domain 48	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158076915-4	chr2	158076427	158077427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291136, exon 6 of 6)	3' UTR (NM_001291136, exon 6 of 6)	14870.0	NR_040609	72340.0	Mm.443395	NR_040609	ENSMUSG00000100860	2010009K17Rik	-	RIKEN cDNA 2010009K17 gene	ncRNA	11.0	17.0	24.0	10.0	20.5	13.5
Merged-chr6-30048019-4	chr6	30047479	30048479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010938)	promoter-TSS (NM_010938)	-9.0	NM_001164228	18181.0	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	8.0	28.5	31.5	12.5	34.5	35.0
Merged-chr14-47649267-4	chr14	47648790	47649790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347524)	promoter-TSS (NM_001347524)	-21.0	NM_001347527	16709.0	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	23.5	35.0	46.0	26.5	75.0	53.5
Merged-chr6-54082718-4	chr6	54082216	54083216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	42784.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	10.0	13.5	12.5	6.0	13.5	9.0
Merged-chr8-120323225-4	chr8	120322715	120323715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94985.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120463243-4	chr6	120462723	120463723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008359)	promoter-TSS (NM_008359)	26.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-92638343-4	chr7	92637844	92638844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1202.0	NM_028665	73845.0	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-40663708-2	chr17	40663208	40664208	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45-int|LTR|ERVK	31633.0	NM_001251916	100126766.0	Mm.471591	NM_001251916	ENSMUSG00000093957	Esp3	Gm21945	exocrine gland secreted peptide 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21408557-4	chr13	21408086	21409086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5831.0	NM_023685	72739.0	Mm.296071	NM_023685	ENSMUSG00000021327	Zkscan3	2810435N07Rik|AA408594|AI132359|Skz1|Zf47|Zfp-47|Zfp306|Zfp307|mszf35	zinc finger with KRAB and SCAN domains 3	protein-coding	43.0	64.5	82.0	80.0	109.5	85.0
Merged-chr1-55529132-6	chr1	55528635	55529635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	123189.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-111096807-4	chr11	111096318	111097318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30654.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	69.0	88.0	51.0	44.5	55.0	54.0
Merged-chr11-8624757-4	chr11	8624267	8625267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	CpG	39768.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	1.5	5.5	0.0	0.0	3.5
Merged-chr17-46132146-2	chr17	46131646	46132646	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029338, intron 4 of 4)	intron (NM_029338, intron 4 of 4)	12052.0	NM_029338	75564.0	Mm.17993	NM_029338	ENSMUSG00000023966	Rsph9	1700027N10Rik	radial spoke head 9 homolog (Chlamydomonas)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-16527411-4	chr16	16526906	16527906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301818)	promoter-TSS (NM_001301818)	5.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-81518502-4	chr17	81518000	81519000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	219887.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84146053-4	chr17	84145534	84146534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41913.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9973269-2	chr19	9972769	9973769	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-7331.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr7-29239261-2	chr7	29238761	29239761	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357664, intron 1 of 7)	intron (NM_001357664, intron 1 of 7)	804.0	NM_001357664	77254.0	Mm.36699	NM_029887	ENSMUSG00000030588	Yif1b	9430029K10Rik|Yip1b	Yip1 interacting factor homolog B (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	1.5	0.0
Merged-chr17-29360893-4	chr17	29360406	29361406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013710)	promoter-TSS (NM_013710)	-8.0	NM_013710	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	8.5	40.5	11.0	14.5	6.0	9.5
Merged-chr17-17766669-4	chr17	17766177	17767177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	62736.0	NM_001104539	626942.0	Mm.404019	NM_001104539	ENSMUSG00000092120	Vmn2r90	EG626942	vomeronasal 2, receptor 90	protein-coding	0.0	0.0	0.5	1.0	9.5	0.5
Merged-chr10-62287867-4	chr10	62287368	62288368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010438, intron 13 of 21)	intron (NM_010438, intron 13 of 21)	35430.0	NM_009314	21337.0	Mm.8054	NM_009314	ENSMUSG00000020081	Tacr2	Nk2r|Skr|Tac2r	tachykinin receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41900706-4	chr19	41900210	41901210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4557.0	NM_199447	107094.0	Mm.276044	NM_199447	ENSMUSG00000035049	Rrp12	AA408556|AA536972|mKIAA0690	ribosomal RNA processing 12 homolog (S. cerevisiae)	protein-coding	2.0	0.0	4.5	0.0	4.5	9.0
Merged-chr3-142619834-4	chr3	142619333	142620333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010260)	promoter-TSS (NM_010260)	-830.0	NM_010260	14469.0	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-97770452-4	chr1	97769937	97770937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173760)	promoter-TSS (NM_173760)	265.0	NM_001310773	252876.0	Mm.86090	NM_026250	ENSMUSG00000026333	Gin1	4930429M06Rik|8430411H10Rik|Gin-1|Zh2c2	gypsy retrotransposon integrase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93754878-4	chr1	93754371	93755371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025920)	promoter-TSS (NM_025920)	-33.0	NM_025920	67026.0	Mm.272356	NM_025920	ENSMUSG00000026279	Thap4	2010320B01Rik	THAP domain containing 4	protein-coding	16.0	19.5	32.0	6.0	18.5	19.5
Merged-chr10-12867015-4	chr10	12866501	12867501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5266.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97430472-4	chr6	97429989	97430989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	28797.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-24527669-4	chr6	24527186	24528186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080847)	promoter-TSS (NM_080847)	4.0	NM_001311068	68202.0	Mm.275780	NM_026614	ENSMUSG00000023089	Ndufa5	2900002J19Rik|CI-13kD-B	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120452604-4	chr6	120452102	120453102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10595.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-68060866-4	chr15	68060357	68061357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	197999.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65546487-4	chr9	65546064	65547064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33523.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	35.0	66.5	49.0	25.5	36.5	37.0
Merged-chr15-86215122-2	chr15	86214622	86215622	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 1 of 12)	intron (NM_145476, intron 1 of 12)	663.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158144478-4	chr2	158143980	158144980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 1 of 12)	intron (NM_009373, intron 1 of 12)	1912.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-121034977-1	chr7	121034477	121035477	+	1000.0	f0_balb.idr	intron (NM_021554, intron 1 of 4)	CpG	532.0	NM_021554	59052.0	Mm.29122	NM_021554	ENSMUSG00000030876	Mettl9	0610012D09Rik|AA517660|Drev|MNCb-5680	methyltransferase like 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95902441-4	chr16	95901978	95902978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040484, intron 1 of 3)	B4A|SINE|B4	-3765.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-193931549-2	chr1	193931054	193932054	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	291205.0	NR_040477	74942.0	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	0.0	0.0	4.5	0.0	0.0	3.5
Merged-chr1-13383705-4	chr1	13383215	13384215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-9632.0	NM_008678	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126853224-4	chr8	126852741	126853741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4221.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69423468-2	chr11	69422968	69423968	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 79 of 85)	intron (NM_001081330, intron 79 of 85)	-9793.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	4.0	1.0	0.5	0.0	2.5	0.0
Merged-chr7-30373715-4	chr7	30373220	30374220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10948.0	NM_175478	233067.0	Mm.23157	NM_175478	ENSMUSG00000036957	Lrfn3	A530045B06Rik|SALM4	leucine rich repeat and fibronectin type III domain containing 3	protein-coding	6.5	6.0	4.5	9.0	5.5	7.0
Merged-chr15-36173981-4	chr15	36173486	36174486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023127)	promoter-TSS (NM_023127)	-24.0	NM_023127	17749.0	Mm.27375	NM_023127	ENSMUSG00000045996	Polr2k	ABC10-alpha|MafY|Mt1a|RPABC4|RPB10alpha|RPB12|RPB7.0	polymerase (RNA) II (DNA directed) polypeptide K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5935856-3	chr17	5935346	5936346	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-5434.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13494461-4	chr8	13493985	13494985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019521)	promoter-TSS (NM_019521)	50.0	NM_019521	14456.0	Mm.3982	NM_019521	ENSMUSG00000031451	Gas6	Gas-6	growth arrest specific 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122481286-2	chr8	122480786	122481786	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357349)	TTS (NM_001357349)	5143.0	NR_152823	66965.0	Mm.482288	NM_153775	ENSMUSG00000049482	Ctu2	2310061F22Rik|C16orf84|Ncs2	cytosolic thiouridylase subunit 2	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr11-32205310-4	chr11	32204774	32205774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030093)	promoter-TSS (NM_030093)	-141.0	NM_030093	78372.0	Mm.29952	NM_030093	ENSMUSG00000040767	Snrnp25	3300001G02Rik|AL033324|C16ORF33	small nuclear ribonucleoprotein 25 (U11/U12)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123042424-4	chr8	123041925	123042925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037865)	promoter-TSS (NR_037865)	-141.0	NM_001081379	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38775580-4	chr16	38775066	38776066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178924, intron 7 of 7)	intron (NM_178924, intron 7 of 7)	24637.0	NM_178924	22268.0	Mm.130793	NM_178924	ENSMUSG00000049436	Upk1b	AI413235|Tspan20|UPIb|Upk1	uroplakin 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148568089-4	chr2	148567585	148568585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0-int|LTR|ERVL-MaLR	-104530.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109255185-4	chr3	109254675	109255675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85508.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	21.0	50.0	39.5	32.0	42.0	33.0
Merged-chr10-128338644-4	chr10	128338141	128339141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026444, intron 1 of 10)	intron (NM_026444, intron 1 of 10)	914.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118869845-4	chr10	118869318	118870318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001014390)	promoter-TSS (NM_001014390)	-915.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	24.0	69.5	37.0	62.5	83.5	37.0
Merged-chr11-22859740-4	chr11	22859236	22860236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016888)	promoter-TSS (NM_016888)	-1.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150009098-4	chr4	150008593	150009593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173371)	promoter-TSS (NM_173371)	-70.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98293874-2	chr12	98293374	98294374	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25239.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-112268055-4	chr2	112267521	112268521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133649, intron 1 of 24)	intron (NM_133649, intron 1 of 24)	1707.0	NM_133649	107723.0	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-38778319-4	chr12	38777852	38778852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1730.0	NM_001347379	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.0	4.0	4.0	0.5	2.5	11.0
Merged-chr10-7232983-4	chr10	7232489	7233489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20752.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	15.5	27.0	23.0	13.0	36.5	22.5
Merged-chr11-23007767-4	chr11	23007251	23008251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5636.0	NM_028672	73873.0	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127288508-3	chr10	127287995	127288995	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347171, intron 1 of 12)	intron (NM_001347171, intron 1 of 12)	523.0	NM_001347171	110962.0	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17676642-4	chr12	17676145	17677145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14164.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	17.5	16.0	12.0	15.0	17.5	9.5
Merged-chr19-47936582-4	chr19	47936099	47937099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME3G|LINE|L1	-1113.0	NM_001163267	381229.0	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	15.0	55.5	50.5	33.5	49.0	47.0
Merged-chr7-119921220-4	chr7	119920710	119921710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21099.0	NR_126475	73919.0	Mm.46381	NM_029610	ENSMUSG00000030922	Lyrm1	1110065L10Rik|2310004B22Rik|4930404J24Rik	LYR motif containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-46788552-4	chr7	46788064	46789064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005247, intron 4 of 22)	intron (NM_001005247, intron 4 of 22)	7317.0	NM_001005248	246694.0	Mm.379442	NM_178742	ENSMUSG00000014418	Hps5	AI646796|AL022647|C85120|haze|hz|maroon|mr|ru-2|ru2	HPS5, biogenesis of lysosomal organelles complex 2 subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31295282-4	chr17	31294797	31295797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153062)	promoter-TSS (NM_153062)	-186.0	NM_153062	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-194879791-4	chr1	194879302	194880302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57801.0	NR_039539	100628615.0		NR_039539	ENSMUSG00000092633	Mir3962	mmu-mir-3962|mu-mir-3962	microRNA 3962	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-111089068-3	chr11	111088572	111089572	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22908.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	39.0	40.5	16.5	7.5	10.0	8.5
Merged-chr4-59803603-4	chr4	59803092	59804092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2058.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-60991721-4	chr9	60991235	60992235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25334.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66882593-4	chr9	66882117	66883117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	37088.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91776481-4	chr12	91776002	91777002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	9934.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-48834478-4	chr11	48833986	48834986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053166, intron 1 of 6)	tRNA-Ala-GCG|tRNA|tRNA	-2985.0	NM_001347446	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-81039542-4	chr3	81039037	81040037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	3121.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57913000-4	chr15	57912520	57913520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356310, intron 1 of 19)	intron (NM_001356310, intron 1 of 19)	821.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	11.5	12.5	11.5	3.0	14.0	7.0
Merged-chr11-97533256-4	chr11	97532753	97533753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 10 of 19)	intron (NM_018873, intron 10 of 19)	-32913.0	NM_001289118	100141474.0	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-111122271-4	chr7	111121791	111122791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015573, intron 1 of 2)	CpG	384.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76816768-2	chr15	76816268	76817268	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	1402.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-60890368-4	chr8	60889854	60890854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357270)	promoter-TSS (NM_001357270)	-39.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25861475-4	chr17	25860946	25861946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163766)	promoter-TSS (NM_001163766)	69.0	NM_001163766	106618.0	Mm.35470	NM_134124	ENSMUSG00000073434	Wdr90	3230401M21Rik|AI551153|mKIAA1924	WD repeat domain 90	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26933119-4	chr17	26932620	26933620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302397)	promoter-TSS (NM_001302397)	-7.0	NM_001302397	21652.0	Mm.258953	NM_009343	ENSMUSG00000024193	Phf1	AW557215|D17Ertd455e|Pcl1|Phf2|Tctex3	PHD finger protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-43449594-4	chr6	43449098	43450098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045988, intron 1 of 2)	MTD|LTR|ERVL-MaLR	7169.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-56757904-3	chr4	56757400	56758400	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026079, intron 34 of 36)	URR1B|DNA|hAT-Charlie	14478.0	NM_009611	11470.0	Mm.30959	NM_009611	ENSMUSG00000070979	Actl7a	Tact2	actin-like 7a	protein-coding	44.0	124.0	88.0	4.0	3.5	3.5
Merged-chr7-126607093-2	chr7	126606593	126607593	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12183.0	NM_145636	246779.0	Mm.222632	NM_145636	ENSMUSG00000044701	Il27	IL-27|IL-27p28|Il30|p28	interleukin 27	protein-coding	0.5	0.0	0.0	2.5	0.5	0.0
Merged-chr6-50060130-4	chr6	50059630	50060630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-50111.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	14.5	25.0	27.5	23.5	16.5	20.0
Merged-chr5-92505663-4	chr5	92505152	92506152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007644)	promoter-TSS (NM_007644)	5.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101822039-2	chr7	101821539	101822539	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001122739)	TTS (NM_001122739)	3726.0	NM_008887	11859.0	Mm.5028	NM_008887	ENSMUSG00000007946	Phox2a	Arix|Phox2|Pmx2|Pmx2a|Px2a	paired-like homeobox 2a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136449445-4	chr6	136448901	136449901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33832.0	NM_001201390	100502936.0	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	10.0	41.0	21.5	23.0	46.0	51.5
Merged-chr10-60349220-4	chr10	60348715	60349715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028732, intron 1 of 6)	intron (NM_028732, intron 1 of 6)	2364.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-92885639-4	chr7	92885129	92886129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028243, intron 1 of 8)	LTR48B|LTR|ERV1	10376.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-97997229-4	chr16	97996692	97997692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_130962)	promoter-TSS (NR_130962)	-123.0	NM_001362093	245305.0	Mm.148033	NM_001362093		B230307C23Rik	8030444G23Rik|EG245305	RIKEN cDNA B230307C23 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-78237946-4	chr16	78237448	78238448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17506.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100725260-4	chr12	100724764	100725764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330702)	promoter-TSS (NM_001330702)	-144.0	NM_153587	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120511152-4	chr5	120510665	120511665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133221)	promoter-TSS (NM_133221)	-27.0	NM_001177595	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-67576454-4	chr3	67575939	67576939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6329.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43465557-4	chr7	43465061	43466061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290316, intron 4 of 9)	intron (NM_001290316, intron 4 of 9)	2328.0	NM_001290316	75690.0	Mm.30200	NM_001290316	ENSMUSG00000070604	Vsig10l	-	V-set and immunoglobulin domain containing 10 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113752453-4	chr6	113751948	113752948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001036684, intron 19 of 19)	intron (NM_001036684, intron 19 of 19)	-11767.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44420027-4	chr13	44419541	44420541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19686.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	0.0	4.0	1.0	0.0	6.0	2.0
Merged-chr1-151601548-4	chr1	151601049	151602049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	30176.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118599932-4	chr9	118599420	118600420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-6789.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101760462-4	chr13	101759966	101760966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 1 of 15)	intron (NM_001077495, intron 1 of 15)	7751.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	8.0	0.0	2.5	1.5	0.5	4.0
Merged-chr1-172370235-3	chr1	172369774	172370774	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001039484, exon 2 of 2)	3' UTR (NM_001039484, exon 2 of 2)	-6257.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	6.0	10.0	5.0	26.5	54.5	42.5
Merged-chr16-30390757-4	chr16	30390261	30391261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2231.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	0.5	9.0	1.5	1.0	21.5	2.5
Merged-chr7-63905330-4	chr7	63904850	63905850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	L1MC3|LINE|L1	-11507.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	58.5	105.5	85.0	56.0	93.0	89.5
Merged-chr11-29808119-2	chr11	29807619	29808619	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 17 of 41)	intron (NM_146016, intron 17 of 41)	17549.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	15.5	54.0	47.5	27.0	57.5	52.0
Merged-chr12-113156239-4	chr12	113155752	113156752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134041)	promoter-TSS (NM_134041)	-169.0	NM_134041	104732.0	Mm.87616	NM_134041	ENSMUSG00000037466	Tedc1	4930427A07Rik|AA536649|mFLJ00116	tubulin epsilon and delta complex 1	protein-coding	40.5	124.0	78.5	57.5	130.0	82.5
Merged-chr2-29649417-4	chr2	29648900	29649900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	29680.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31090187-4	chr3	31089676	31090676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4882.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-25498597-4	chr5	25498085	25499085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081383, exon 1 of 59)	5' UTR (NM_001081383, exon 1 of 59)	198.0	NM_001081383	231051.0	Mm.332268	NM_001081383	ENSMUSG00000038056	Kmt2c	E330008K23Rik|HALR|Mll3|mKIAA1506	lysine (K)-specific methyltransferase 2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138014326-4	chr4	138013831	138014831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	16506.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	16.0	61.5	22.5	38.0	43.5	35.0
Merged-chr14-62842713-4	chr14	62842208	62843208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	4987.0	NR_106174	102465889.0		NR_106174	ENSMUSG00000099245	Mir8098	Gm27462|mmu-mir-8098	microRNA 8098	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59822711-4	chr13	59822217	59823217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153538, intron 1 of 27)	CpG	430.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-181881772-4	chr1	181881295	181882295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39394.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19119785-4	chr7	19119281	19120281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175530)	promoter-TSS (NM_175530)	-78.0	NM_175530	243867.0	Mm.230830	NM_175530	ENSMUSG00000050428	Fbxo46	20D7-FC4|4932704E22Rik|Fbxo34l	F-box protein 46	protein-coding	0.0	0.0	0.5	2.0	2.0	1.0
Merged-chr5-121943780-3	chr5	121943289	121944289	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007804, intron 2 of 22)	intron (NM_007804, intron 2 of 22)	94792.0	NM_001359949	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	0.0	0.0	5.5	1.5	1.5	0.5
Merged-chr12-84218427-4	chr12	84217906	84218906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	CpG	475.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70201854-2	chr11	70201354	70202354	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12056.0	NM_153081	216867.0	Mm.289238	NM_153081	ENSMUSG00000040938	Slc16a11	AB041591|MCT 11|MNCb-2717	solute carrier family 16 (monocarboxylic acid transporters), member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-56522407-4	chr13	56521897	56522897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346732)	promoter-TSS (NM_001346732)	-75.0	NM_178674	213311.0	Mm.233904	NM_178674	ENSMUSG00000035509	Fbxl21	D630045D17Rik|FBL3B|FBXL3B|Psttm	F-box and leucine-rich repeat protein 21	protein-coding	0.0	3.0	1.0	0.0	2.5	0.0
Merged-chr11-6547183-3	chr11	6546696	6547696	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190343, intron 1 of 8)	CpG	309.0	NM_001190343	216527.0	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34206611-4	chr10	34206116	34207116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	935.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54958137-4	chr6	54957622	54958622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172729, intron 1 of 11)	intron (NM_172729, intron 1 of 11)	13539.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96775890-4	chr11	96775409	96776409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028965, intron 2 of 8)	intron (NM_028965, intron 2 of 8)	1646.0	NM_028965	74479.0	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	25.5	78.5	32.5	25.0	78.0	31.5
Merged-chr2-60851406-4	chr2	60850908	60851908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	30030.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28796818-4	chr7	28796309	28797309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177158, exon 9 of 12)	exon (NM_177158, exon 9 of 12)	7840.0	NM_177158	320435.0	Mm.74632	NM_177158	ENSMUSG00000051735	Rinl	5830482F20Rik|9930116N10Rik	Ras and Rab interactor-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-9334999-4	chr11	9334494	9335494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 26 of 61)	intron (NM_178259, intron 26 of 61)	143052.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	23.0	58.0	48.5	28.5	44.5	46.0
Merged-chr18-73572472-4	chr18	73571975	73572975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039214)	promoter-TSS (NM_001039214)	-230.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34932069-4	chr18	34931584	34932584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144866)	promoter-TSS (NM_144866)	-81.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98145658-4	chr15	98145156	98146156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170710)	promoter-TSS (NM_001170710)	46.0	NM_030121	78541.0	Mm.200766	NM_030121	ENSMUSG00000048175	Asb8	4930539L19Rik|AI788835|C430011H06Rik	ankyrin repeat and SOCS box-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-90909411-5	chr8	90908839	90909839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	CpG	-22910.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	34.5	113.0	97.0	17.5	66.0	31.5
Merged-chr6-21959116-4	chr6	21958649	21959649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311061, intron 4 of 11)	Lx9|LINE|L1	9534.0	NM_023626	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18677178-2	chr2	18676658	18677658	+	1000.0	f0_balb.idr|f0_c57.idr	TTS (NM_147778)	TTS (NM_147778)	140.0	NM_007552	12151.0	Mm.289584	NM_007552	ENSMUSG00000026739	Bmi1	AW546694|Bmi-1|Pcgf4	Bmi1 polycomb ring finger oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64690975-6	chr1	64690619	64691619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038009)	promoter-TSS (NR_038009)	-226.0	NM_001097644	227210.0	Mm.39706	NM_001097644	ENSMUSG00000070871	Ccnyl1	9630037P07Rik|AW554339	cyclin Y-like 1	protein-coding	4.0	14.5	3.5	3.0	5.0	5.0
Merged-chr4-129542782-4	chr4	129542296	129543296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008228)	promoter-TSS (NM_008228)	-150.0	NM_008228	433759.0	Mm.202504	NM_008228	ENSMUSG00000028800	Hdac1	HD1|Hdac1-ps|MommeD5|RPD3	histone deacetylase 1	protein-coding	31.0	44.0	43.0	34.0	40.5	37.0
Merged-chr2-52960918-4	chr2	52960426	52961426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	103058.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92506429-6	chr5	92505965	92506965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007644)	promoter-TSS (NM_007644)	-808.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65575992-4	chr9	65575492	65576492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 1 of 5)	intron (NM_153119, intron 1 of 5)	4095.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.5	42.0	14.5	5.5	76.0	27.0
Merged-chr10-75675846-4	chr10	75675345	75676345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172549, intron 29 of 36)	intron (NM_172549, intron 29 of 36)	-31837.0	NM_027890	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77279045-4	chr10	77278531	77279531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19731.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-3115753-4	chr17	3115247	3116247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134123, intron 1 of 19)	intron (NM_134123, intron 1 of 19)	775.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	41.5	39.0	40.0	39.5	24.0	39.5
Merged-chr17-71298253-2	chr17	71297753	71298753	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	Lx5b|LINE|L1	12758.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66111323-2	chr5	66110823	66111823	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-13144.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	29.0	40.0	27.5	12.5	41.0	43.5
Merged-chr5-125465829-4	chr5	125465331	125466331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-10042.0	NM_030210	78894.0	Mm.431573	NM_030210	ENSMUSG00000029482	Aacs	2210408B16Rik|SUR5	acetoacetyl-CoA synthetase	protein-coding	6.0	1.5	4.5	2.0	8.0	7.0
Merged-chr17-35125288-4	chr17	35124796	35125796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001128597)	TTS (NM_001128597)	-1106.0	NM_033477	114585.0	Mm.42070	NM_033477	ENSMUSG00000043311	D17H6S53E	G4|NG34	DNA segment, Chr 17, human D6S53E	protein-coding	6.5	1.5	1.5	0.0	3.5	3.5
Merged-chr14-66257826-4	chr14	66257325	66258325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	23227.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	8.0	27.5	26.0	0.0	18.0	16.5
Merged-chr11-89001827-4	chr11	89001313	89002313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009546, intron 1 of 8)	intron (NM_009546, intron 1 of 8)	2410.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	94.0	159.0	147.0	39.5	122.5	147.0
Merged-chr4-12008828-2	chr4	12008328	12009328	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42254.0	NR_040577	100503636.0	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82122579-2	chr15	82122079	82123079	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028897, intron 26 of 30)	Lx5b|LINE|L1	-5343.0	NM_172428	76457.0	Mm.440373	NM_172428	ENSMUSG00000068114	Ccdc134	2310042L06Rik|AW208859	coiled-coil domain containing 134	protein-coding	1.0	5.0	3.0	0.0	0.0	1.0
Merged-chr2-167988417-4	chr2	167987923	167988923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080708, intron 13 of 21)	intron (NM_001080708, intron 13 of 21)	22170.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60843250-4	chr2	60842763	60843763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	38175.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-77850068-4	chr14	77849586	77850586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025384, intron 3 of 5)	intron (NM_025384, intron 3 of 5)	24831.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	178.5	507.5	357.5	178.0	335.0	264.0
Merged-chr19-26747012-2	chr19	26746512	26747512	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011416, intron 27 of 32)	intron (NM_011416, intron 27 of 32)	-1153.0	NM_001347439	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0.0	1.5	0.5	0.0	1.5	1.5
Merged-chr11-100320493-4	chr11	100319987	100320987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011508, intron 1 of 3)	CpG	538.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23564256-4	chr17	23563738	23564738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033496)	promoter-TSS (NM_001033496)	-12.0	NM_001033496	449521.0	Mm.268582	NM_001033496	ENSMUSG00000071256	Zfp213	BC038178|D17Ertd197e	zinc finger protein 213	protein-coding	154.5	302.0	223.0	109.0	238.0	186.0
Merged-chr9-115310572-4	chr9	115310102	115311102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024222)	promoter-TSS (NM_024222)	-181.0	NM_024222	68292.0	Mm.296158	NM_024222	ENSMUSG00000032437	Stt3b	1300006C19Rik|Simp	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	protein-coding	123.0	211.0	223.5	115.0	252.0	177.0
Merged-chr16-70803734-4	chr16	70803228	70804228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	187303.0	NR_040474	52645.0	Mm.188475	NR_040474		D16Ertd519e	-	DNA segment, Chr 16, ERATO Doi 519, expressed	ncRNA	16.0	12.0	11.5	5.5	30.5	21.5
Merged-chr8-35679217-4	chr8	35678706	35679706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081279, exon 3 of 3)	3' UTR (NM_001081279, exon 3 of 3)	-90186.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	17.0	47.0	35.5	19.0	70.5	31.0
Merged-chr11-75170457-4	chr11	75170012	75171012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010430)	promoter-TSS (NM_010430)	-257.0	NM_010430	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-153913005-4	chr3	153912492	153913492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163478)	promoter-TSS (NM_001163478)	-26.0	NR_028094	19352.0	Mm.277831	NM_011231	ENSMUSG00000038975	Rabggtb	-	Rab geranylgeranyl transferase, b subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180774820-2	chr1	180774320	180775320	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	38785.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-33303617-4	chr14	33303106	33304106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 4 of 10)	intron (NM_153800, intron 4 of 10)	86783.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181238325-2	chr2	181237825	181238825	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_183162, exon 5 of 19)	exon (NM_183162, exon 5 of 19)	3702.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46436952-4	chr11	46436449	46437449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025426)	promoter-TSS (NM_025426)	2.0	NM_001104530	66213.0	Mm.24159	NM_025426	ENSMUSG00000020397	Med7	1110063B05Rik|Crsp33|Crsp9	mediator complex subunit 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-92611012-4	chr13	92610515	92611515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172588)	promoter-TSS (NM_172588)	-123.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123721043-4	chr5	123720533	123721533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027494)	promoter-TSS (NM_027494)	11.0	NM_027494	70650.0	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	8.5	52.0	34.0	9.5	28.0	26.0
Merged-chr5-66101139-1	chr5	66100639	66101639	+	1000.0	f1_balb.idr	intron (NM_001127382, intron 2 of 7)	B4A|SINE|B4	-2960.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.5	16.0	11.5	0.5	21.0	6.5
Merged-chr11-53780024-1	chr11	53779524	53780524	+	1000.0	f0_balb.idr	Intergenic	Intergenic	9551.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3910365-2	chr19	3909865	3910865	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271443, intron 5 of 6)	intron (NM_001271443, intron 5 of 6)	2409.0	NM_144870	225887.0	Mm.44227	NM_144870	ENSMUSG00000059734	Ndufs8	BC021616|CI-23kD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128705575-2	chr2	128705075	128706075	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	6660.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126778872-4	chr8	126778373	126779373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-70147.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	65.0	92.0	74.5	18.0	54.5	35.0
Merged-chr5-3494598-4	chr5	3494168	3495168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-49165.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-24653420-4	chr18	24652916	24653916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026779)	promoter-TSS (NM_026779)	-275.0	NM_026779	68591.0	Mm.28252	NM_026779	ENSMUSG00000039616	Mocos	1110018O12Rik|HMCS|MCS|MOS	molybdenum cofactor sulfurase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27742338-4	chr3	27741838	27742838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31886.0	NM_173182	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108508029-2	chr6	108507529	108508529	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 54 of 61)	ORR1D1|LTR|ERVL-MaLR	18286.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	2.5	0.0	2.5	2.5	0.0	2.5
Merged-chr15-83130056-3	chr15	83129561	83130561	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 6 of 7)	intron (NM_001347082, intron 6 of 7)	-7260.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86526661-4	chr6	86526167	86527167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011865)	promoter-TSS (NM_011865)	-478.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30738652-4	chr13	30738148	30739148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10585.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-47014826-4	chr13	47014300	47015300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175340)	promoter-TSS (NM_175340)	50.0	NM_175340	105193.0	Mm.25593	NM_175340	ENSMUSG00000044231	Nhlrc1	AI505271|B230309E09Rik|EPM2B	NHL repeat containing 1	protein-coding	5.5	16.0	26.0	20.0	27.0	11.0
Merged-chr3-108911202-4	chr3	108910660	108911660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025845, intron 1 of 5)	CpG	569.0	NM_025845	66921.0	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	67.0	197.0	171.5	60.0	198.0	174.0
Merged-chr19-12801256-4	chr19	12800757	12801757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134152, intron 1 of 8)	intron (NM_134152, intron 1 of 8)	2678.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	39.5	104.5	79.5	52.0	124.5	78.5
Merged-chr2-59427420-4	chr2	59426918	59427918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40736.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36482214-4	chr18	36481713	36482713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27718.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102757881-4	chr12	102757383	102758383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025666)	promoter-TSS (NM_025666)	-73.0	NM_001142938	100233175.0	Mm.291222	NM_001142938	ENSMUSG00000091931	Gon7	-	GON7, KEOPS complex subunit homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-77342142-4	chr2	77341643	77342643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61551.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25017117-4	chr8	25016630	25017630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007404)	promoter-TSS (NM_007404)	-81.0	NM_027194	69742.0	Mm.28626	NM_027194	ENSMUSG00000031556	Tm2d2	2410018G23Rik|Blp1	TM2 domain containing 2	protein-coding	9.0	7.5	10.5	9.0	5.0	11.0
Merged-chr2-5713452-4	chr2	5712949	5713949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	1313.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	22.0	43.0	32.5	38.5	30.5	25.5
Merged-chr7-28384545-2	chr7	28384045	28385045	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026042)	TTS (NM_026042)	-5317.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69036979-2	chr11	69036479	69037479	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001013256)	TTS (NM_001013256)	-8658.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95893869-4	chr3	95893390	95894390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146134)	promoter-TSS (NM_146134)	-31.0	NM_146104	226548.0	Mm.306954	NM_146104	ENSMUSG00000015750	Aph1a	6530402N02Rik|APH-1a	aph1 homolog A, gamma secretase subunit	protein-coding	10.0	6.5	16.0	2.0	7.5	22.0
Merged-chr14-27508457-4	chr14	27507955	27508955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177111)	promoter-TSS (NM_177111)	5.0	NM_177111	320234.0	Mm.247767	NM_177111	ENSMUSG00000046753	Ccdc66	E230015L20Rik	coiled-coil domain containing 66	protein-coding	1.5	0.5	0.0	2.5	0.0	2.5
Merged-chr10-44625801-4	chr10	44625289	44626289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-167041.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-138167058-2	chr6	138166558	138167558	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	25471.0	NM_001361309	56615.0	Mm.14796	NM_019946	ENSMUSG00000008540	Mgst1	1500002K10Rik|Gst	microsomal glutathione S-transferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139377593-4	chr7	139377081	139378081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11528.0	NM_183144	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152090339-4	chr1	152089830	152090830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197990)	promoter-TSS (NM_197990)	-10.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78257170-2	chr11	78256670	78257670	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-4584.0	NM_001002004	72503.0	Mm.237103	NM_001002004	ENSMUSG00000010277	2610507B11Rik	AU022687|D11Bhm178e|D11Bhm179e|E1|Kiaa0100|mKIAA0100	RIKEN cDNA 2610507B11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114738867-1	chr11	114738367	114739367	+	1000.0	f1_balb.idr	intron (NM_001034878, intron 5 of 12)	intron (NM_001034878, intron 5 of 12)	11455.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	0.0	0.0	0.5	0.0	1.5	3.5
Merged-chr17-56990265-4	chr17	56989782	56990782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017393)	promoter-TSS (NM_017393)	18.0	NM_017393	53895.0	Mm.287892	NM_017393	ENSMUSG00000002660	Clpp	AU019820|D17Wsu160e	caseinolytic mitochondrial matrix peptidase proteolytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32539436-4	chr9	32538954	32539954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	1998.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93444924-3	chr1	93444425	93445425	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133808, intron 1 of 27)	intron (NM_133808, intron 1 of 27)	776.0	NM_001301364	110611.0	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-144283812-4	chr5	144283331	144284331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025833, intron 7 of 13)	Kanga2_a|DNA|TcMar-Tc2	6770.0	NR_040432	100504231.0	Mm.441035	NR_040432	ENSMUSG00000086894	Gm15708	-	predicted gene 15708	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21082908-4	chr11	21082394	21083394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8430.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24007130-4	chr17	24006629	24007629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9029.0	NM_133731	70835.0	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	124.0	264.5	174.0	87.5	194.0	136.0
Merged-chr10-59295378-2	chr10	59294878	59295878	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27918.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-116908608-2	chr2	116908108	116909108	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040335, intron 2 of 3)	intron (NR_040335, intron 2 of 3)	8456.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-80547382-1	chr9	80546882	80547882	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-81944.0	NM_022016	63859.0	Mm.422780	NM_022016	ENSMUSG00000032343	Impg1	A930015H12Rik|IMP150|SPACR	interphotoreceptor matrix proteoglycan 1	protein-coding	0.0	0.0	2.0	2.0	0.5	1.0
Merged-chr11-59554881-4	chr11	59554358	59555358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 5 of 9)	intron (NR_153314, intron 5 of 9)	12172.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60120875-4	chr2	60120354	60121354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 1 of 35)	intron (NM_001001182, intron 1 of 35)	4886.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170002784-4	chr2	170002283	170003283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	YREP_Mm|Unknown|Unknown	-39596.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59455677-4	chr4	59455171	59456171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17038.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79877336-4	chr10	79876822	79877822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-2345.0	NM_011178	19152.0	Mm.2364	NM_011178	ENSMUSG00000057729	Prtn3	PR3|mPR3	proteinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29434247-2	chr6	29433747	29434747	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081185, intron 1 of 47)	intron (NM_001081185, intron 1 of 47)	991.0	NM_001311074	68794.0	Mm.39046	NM_026839	ENSMUSG00000068699	Flnc	1110055E19Rik|ABP-280|ABPL|Fln2	filamin C, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36561279-4	chr18	36560791	36561791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175375, intron 1 of 33)	CpG-6857	688.0	NM_175375	108857.0	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	28.5	81.5	45.0	30.5	86.0	40.0
Merged-chr17-5467000-4	chr17	5466499	5467499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	16070.0	NR_073378	666919.0		NR_073378		Gm8363	EG666919	non-SMC condensin II complex, subunit H2 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65505135-4	chr18	65504616	65505616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	74119.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	39.5	102.0	67.5	71.0	225.5	154.5
Merged-chr14-65100613-4	chr14	65100121	65101121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2515.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167778412-2	chr2	167777912	167778912	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87235.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73467184-4	chr13	73466676	73467676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145376)	promoter-TSS (NM_145376)	-207.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167493090-4	chr2	167492542	167493542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170756)	promoter-TSS (NM_170756)	-168.0	NM_001356523	263876.0	Mm.34342	NM_170756	ENSMUSG00000047030	Spata2	AI504642|mKIAA0757	spermatogenesis associated 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4201703-4	chr19	4201196	4202196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011237)	promoter-TSS (NM_011237)	-93.0	NM_011237	19367.0	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-65177670-4	chr1	65177186	65178186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111320, intron 1 of 8)	intron (NM_001111320, intron 1 of 8)	1456.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23305839-4	chr11	23305305	23306305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1090.0	NM_001190401	17847.0	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30466110-4	chr16	30465588	30466588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-77558.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	22.5	47.0	17.0	6.5	26.5	11.5
Merged-chr4-102570487-4	chr4	102569968	102570968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001177980, exon 1 of 10)	5' UTR (NM_001177980, exon 1 of 10)	408.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	29.5	68.5	38.0	42.5	67.5	39.5
Merged-chr18-53877634-4	chr18	53877126	53878126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152809, intron 1 of 12)	intron (NM_152809, intron 1 of 12)	15513.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	29.5	25.5	24.5	7.5	15.0	8.5
Merged-chr3-58516884-4	chr3	58516387	58517387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8934.0	NM_001005509	229317.0	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	12.0	44.0	18.5	5.5	27.5	20.5
Merged-chr4-6357253-4	chr4	6356759	6357759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-8421.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	20.0	73.0	57.5	33.0	84.0	54.0
Merged-chr11-98328499-2	chr11	98327999	98328999	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010895, intron 1 of 1)	CpG	1146.0	NM_010895	18013.0	Mm.4814	NM_010895	ENSMUSG00000038255	Neurod2	Ndrf|bHLHa1	neurogenic differentiation 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-174436457-4	chr2	174435878	174436878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022325, intron 2 of 5)	intron (NM_022325, intron 2 of 5)	2661.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55490445-5	chr12	55489981	55490981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010907, exon 5 of 6)	exon (NM_010907, exon 5 of 6)	2166.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123984713-2	chr9	123984213	123985213	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-6305.0	NM_007718	12770.0	Mm.423532	NM_007718	ENSMUSG00000064039	Ccr1l1	Cmkbr1l1	chemokine (C-C motif) receptor 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-92059659-4	chr2	92059173	92060173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-35503.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-73957857-4	chr16	73957348	73958348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358493, intron 16 of 28)	intron (NM_001358493, intron 16 of 28)	384219.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148409368-4	chr2	148408895	148409895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1207.0	NM_009378	21824.0	Mm.24096	NM_009378	ENSMUSG00000074743	Thbd	AI385582|CD141|TM	thrombomodulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110710761-4	chr7	110710248	110711248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-57458.0	NM_001276301	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84727369-4	chr2	84726875	84727875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133840)	promoter-TSS (NM_133840)	-107.0	NM_133840	98985.0	Mm.21583	NM_133840	ENSMUSG00000027079	Clp1	AI462438|Heab	CLP1, cleavage and polyadenylation factor I subunit	protein-coding	88.0	209.5	183.5	108.0	334.5	227.0
Merged-chr4-99829214-4	chr4	99828744	99829744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145549)	promoter-TSS (NM_145549)	-126.0	NM_026348	67733.0	Mm.257094	NM_026348	ENSMUSG00000028549	Itgb3bp	4930471O16Rik|AU022583	integrin beta 3 binding protein (beta3-endonexin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35993849-4	chr17	35993351	35994351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015618)	promoter-TSS (NR_015618)	-653.0	NR_015618	77810.0	Mm.483143	NR_015618		A930015D03Rik	-	RIKEN cDNA A930015D03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117792796-4	chr10	117792283	117793283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134010)	promoter-TSS (NM_134010)	-78.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-66860201-4	chr8	66859715	66860715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163564)	promoter-TSS (NM_001163564)	-2.0	NM_001163564	234344.0	Mm.334561	NM_001163564	ENSMUSG00000014907	Naf1	Gm174	nuclear assembly factor 1 ribonucleoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135689023-4	chr5	135688519	135689519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008898)	promoter-TSS (NM_008898)	-126.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	19.0	55.5	13.5	18.5	74.0	34.0
Merged-chr5-139294318-4	chr5	139293812	139294812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 3 of 10)	intron (NM_172723, intron 3 of 10)	31152.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-54119469-4	chr10	54118948	54119948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43526.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56609846-4	chr17	56609371	56610371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153152)	promoter-TSS (NM_153152)	-100.0	NM_153152	224904.0	Mm.34002	NM_153152	ENSMUSG00000049760	2410015M20Rik	Mic13|QIL1|sr104	RIKEN cDNA 2410015M20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70927631-4	chr14	70927124	70928124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	37517.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	17.0	7.0	31.0	18.5	43.5	38.0
Merged-chr15-63595766-4	chr15	63595194	63596194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-116086.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	31.0	48.0	33.5	49.5	90.0	59.5
Merged-chr6-29513468-4	chr6	29512961	29513961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5509.0	NM_001029985	333088.0	Mm.332961	NM_001029985	ENSMUSG00000059022	Kcp	AW060220|CRIM-2|Crim2|Gm793|KCP-1	kielin/chordin-like protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116756564-4	chr6	116756059	116757059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39801.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129350151-4	chr6	129349649	129350649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177686)	promoter-TSS (NM_177686)	-95.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	16.5	41.5	16.0	5.5	23.5	24.0
Merged-chr6-118455187-4	chr6	118454681	118455681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361901, intron 1 of 5)	CpG	325.0	NM_028335	72720.0	Mm.212572	NM_028335	ENSMUSG00000030145	Zfp248	2810037F07Rik|E130106N01Rik	zinc finger protein 248	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60601884-4	chr13	60601385	60602385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285917)	promoter-TSS (NM_001285917)	-62.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82976848-4	chr18	82976366	82977366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183033, intron 2 of 5)	intron (NM_183033, intron 2 of 5)	-56306.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5844480-2	chr19	5843980	5844980	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_003513, exon 1 of 1)	non-coding (NR_003513, exon 1 of 1)	998.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141670471-4	chr4	141669967	141670967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6352.0	NM_001033150	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	218.0	495.0	412.0	226.0	539.5	481.5
Merged-chr19-11818437-4	chr19	11817916	11818916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	987.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	83.0	270.5	169.5	83.5	272.0	170.0
Merged-chr5-137876981-2	chr5	137876481	137877481	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5223.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39969225-4	chr1	39968730	39969730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 3 of 29)	intron (NM_001252202, intron 3 of 29)	68317.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127763274-4	chr3	127762783	127763783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027808, intron 1 of 13)	intron (NM_027808, intron 1 of 13)	17244.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	28.0	49.5	41.0	27.0	86.5	40.0
Merged-chr10-21200959-4	chr10	21200445	21201445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14001.0	NR_152786	102636600.0	Mm.227606	NR_152786	ENSMUSG00000111005	Gm33619	-	predicted gene, 33619	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112287325-7	chr5	112286848	112287848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	10657.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	8.0	24.0	8.0	12.5	28.5	13.5
Merged-chr11-120035031-4	chr11	120034546	120035546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	6735.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	0.5	20.5	14.5	6.0	10.0	9.0
Merged-chr19-60946163-4	chr19	60945675	60946675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 1 of 15)	MLT1A|LTR|ERVL-MaLR	56426.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	143.0	160.5	159.0	52.5	105.0	109.0
Merged-chr6-34863084-4	chr6	34862596	34863596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197986)	promoter-TSS (NM_197986)	-50.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59543501-4	chr11	59543032	59544032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 2 of 9)	L1MB2|LINE|L1	846.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-78182343-4	chr16	78181827	78182827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73127.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	1.5	0.0	0.0	1.5	0.0	0.0
Merged-chr9-107296645-4	chr9	107296141	107297141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009895)	promoter-TSS (NM_009895)	-18.0	NM_009895	12700.0	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	19.5	22.5	25.0	5.0	6.0	8.5
Merged-chr4-125123020-4	chr4	125122518	125123518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153159, intron 2 of 5)	intron (NM_153159, intron 2 of 5)	4863.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61172887-4	chr14	61172406	61173406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172809, intron 2 of 9)	CpG	34449.0	NM_015788	50720.0	Mm.440703	NM_015788	ENSMUSG00000048279	Sacs	A230052M14|DNAJC29|E130115J16Rik	sacsin	protein-coding	0.0	4.0	2.5	0.0	0.0	0.5
Merged-chr8-56311238-4	chr8	56310628	56311628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008278, intron 4 of 6)	intron (NM_008278, intron 4 of 6)	16576.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	22.0	69.5	41.5	19.5	80.5	52.5
Merged-chr7-143207266-2	chr7	143206766	143207766	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008434, intron 10 of 15)	L1ME1|LINE|L1	89281.0	NR_001461	63830.0	Mm.356096	NR_001461	ENSMUSG00000101609	Kcnq1ot1	Kvlqt1-as|Lit1|Tssc8	KCNQ1 overlapping transcript 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112254742-4	chr5	112254256	112255256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1064.0	NM_001312895	12960.0	Mm.29488	NM_023695	ENSMUSG00000029343	Crybb1	3110006K12Rik|BB1CRY	crystallin, beta B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79963506-4	chr11	79963026	79964026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1139.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	2.5	8.0	7.0	2.5	8.5	7.0
Merged-chr5-140702292-4	chr5	140701808	140702808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028833)	promoter-TSS (NM_028833)	70.0	NM_028833	74239.0	Mm.179704	NM_028833	ENSMUSG00000036555	Iqce	1700028P05Rik|mKIAA1023	IQ motif containing E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21424820-4	chr9	21424323	21425323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253893)	promoter-TSS (NM_001253893)	-85.0	NM_007871	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-104231044-4	chr12	104230547	104231547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009251, intron 3 of 6)	intron (NM_009251, intron 3 of 6)	-5100.0	NM_001353612	20715.0	Mm.312628	NM_009251		Serpina3g	2A2|AI119734|Spi2-1|Spi2/eb.1|Spi2A|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3G	protein-coding	96.5	201.0	159.0	109.5	220.0	152.0
Merged-chr10-111422818-4	chr10	111422333	111423333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50394.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149662342-4	chr4	149661856	149662856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029837, intron 3 of 23)	intron (NM_001029837, intron 3 of 23)	960.0	NM_001164052	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	0.5	3.5	2.0	1.5	0.0	5.5
Merged-chr10-111473679-2	chr10	111473179	111474179	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152558, intron 1 of 14)	CpG	452.0	NR_152558	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90897618-4	chr5	90897141	90898141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6258.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25016246-3	chr8	25015748	25016748	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027194)	promoter-TSS (NM_027194)	674.0	NM_001270996	11502.0	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	5.0	27.0	12.5	14.0	22.5	16.0
Merged-chr5-92137824-4	chr5	92137322	92138322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019490)	promoter-TSS (NM_019490)	-97.0	NM_001359195	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-88107548-4	chr11	88107025	88108025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198013, intron 1 of 10)	intron (NM_198013, intron 1 of 10)	8379.0	NM_198013	103841.0	Mm.374846	NM_198013	ENSMUSG00000018378	Cuedc1	AI841487|C330016O16Rik	CUE domain containing 1	protein-coding	9.5	17.5	12.0	0.5	21.0	6.0
Merged-chr2-167892119-4	chr2	167891613	167892613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40214.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-64947326-6	chr8	64946850	64947850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163747, intron 1 of 4)	CpG	165.0	NM_028427	73067.0	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35050350-4	chr17	35049855	35050855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_033444, exon 1 of 6)	5' UTR (NM_033444, exon 1 of 6)	112.0	NM_033444	114584.0	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	148.5	383.5	255.0	154.5	455.0	233.5
Merged-chr2-180024856-4	chr2	180024450	180025450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177727)	promoter-TSS (NM_177727)	-37.0	NM_177727	241846.0	Mm.21577	NM_177727	ENSMUSG00000039108	Lsm14b	9430078B04|BC040823	LSM family member 14B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-102626305-4	chr9	102625830	102626830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181394)	promoter-TSS (NM_181394)	34.0	NM_181394	69010.0	Mm.2000	NM_181394	ENSMUSG00000035048	Anapc13	1810004D07Rik|APC13|SWM1	anaphase promoting complex subunit 13	protein-coding	255.0	564.0	399.5	242.0	533.0	445.0
Merged-chr9-22131297-4	chr9	22130782	22131782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007388)	promoter-TSS (NM_007388)	583.0	NM_001102404	11433.0	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53903246-4	chr19	53902738	53903738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168492)	promoter-TSS (NM_001168492)	-113.0	NM_001168492	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	114.0	189.0	162.5	67.5	206.5	159.0
Merged-chr6-124359165-4	chr6	124358664	124359664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2078.0	NM_001177502	76921.0	Mm.425335	NM_001177502	ENSMUSG00000079346	1700013D24Rik	-	RIKEN cDNA 1700013D24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105731276-2	chr5	105730776	105731776	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	30466.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	11.0	22.5	13.0	7.0	28.0	12.5
Merged-chr7-27536807-4	chr7	27536295	27537295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317355, intron 10 of 13)	intron (NM_001317355, intron 10 of 13)	13534.0	NM_001033315	233020.0	Mm.429716	NM_001033315	ENSMUSG00000040424	Hipk4	Gm162	homeodomain interacting protein kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97702606-4	chr11	97702098	97703098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011971)	promoter-TSS (NM_011971)	-836.0	NM_011971	26446.0	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	5.5	18.5	19.0	6.0	32.5	17.0
Merged-chr1-151571440-4	chr1	151570951	151571951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022018)	promoter-TSS (NM_022018)	78.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117343166-4	chr8	117342658	117343658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-6012.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34390629-2	chr7	34390129	34391129	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360654)	promoter-TSS (NM_001360654)	-924.0	NM_025948	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23746558-4	chr13	23746023	23747023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175664)	promoter-TSS (NM_175664)	-211.0	NM_175664	319178.0	Mm.390567	NM_175664	ENSMUSG00000075031	Hist1h2bb	H2b-143	histone cluster 1, H2bb	protein-coding	162.0	270.0	181.5	114.0	298.0	177.0
Merged-chr1-13374244-6	chr1	13373698	13374698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008678)	promoter-TSS (NM_008678)	-115.0	NM_008678	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120478883-3	chr14	120478342	120479342	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029519, exon 1 of 2)	exon (NM_029519, exon 1 of 2)	381.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-94035249-6	chr1	94034715	94035715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14722.0	NM_001310769	241159.0	Mm.214565	NM_173772	ENSMUSG00000034000	Neu4	9330166I04	sialidase 4	protein-coding	2.5	2.0	6.0	0.0	2.0	2.0
Merged-chr16-28518359-1	chr16	28517859	28518859	+	1000.0	f1_balb.idr	intron (NM_010199, intron 2 of 5)	intron (NM_010199, intron 2 of 5)	46136.0	NM_001357064	14167.0	Mm.7996	NM_010199	ENSMUSG00000022523	Fgf12	AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1	fibroblast growth factor 12	protein-coding	0.0	0.0	1.5	11.0	24.0	7.0
Merged-chr17-8316209-2	chr17	8315707	8316707	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134114, intron 1 of 7)	ORR1D1|LTR|ERVL-MaLR	-5089.0	NR_073374	75060.0	Mm.426530	NR_073374	ENSMUSG00000087478	4930506C21Rik	-	RIKEN cDNA 4930506C21 gene	ncRNA	1.0	9.0	5.0	0.0	5.0	0.0
Merged-chr12-3960046-4	chr12	3959555	3960555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008895, exon 3 of 3)	exon (NM_008895, exon 3 of 3)	5110.0	NM_001278583	18976.0	Mm.277996	NM_008895	ENSMUSG00000020660	Pomc	ACTH|BE|Beta-LPH|Clip|Gamma-LPH|Npp|Pomc-1|Pomc1|alpha-MSH|alphaMSH|beta-MSH|gamma-MSH	pro-opiomelanocortin-alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9515765-2	chr3	9515265	9516265	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133218, intron 2 of 8)	intron (NM_133218, intron 2 of 8)	94320.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	3.0	12.0	2.0	3.0	20.5	4.5
Merged-chr15-99815052-4	chr15	99814524	99815524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113545, intron 4 of 10)	intron (NM_001113545, intron 4 of 10)	5125.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	118.5	231.5	120.0	76.5	130.5	92.5
Merged-chr3-95632452-4	chr3	95631970	95632970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019561)	TTS (NM_019561)	7490.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91085351-2	chr2	91084850	91085850	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-11328.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	64.0	130.5	112.0	49.0	149.5	100.5
Merged-chr2-172393624-4	chr2	172393133	172394133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276423)	promoter-TSS (NM_001276423)	-161.0	NM_001080820	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-69985370-4	chr7	69984874	69985874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	352448.0	NR_131145	624549.0	Mm.116344	NR_131144	ENSMUSG00000109097	Gm29683	Gm44536	predicted gene, 29683	ncRNA	0.0	13.0	4.0	0.0	11.5	4.0
Merged-chr13-95494997-3	chr13	95494493	95495493	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16338.0	NM_001081159	268686.0	Mm.291249	NM_001081159	ENSMUSG00000021679	S100z	Gm625	S100 calcium binding protein, zeta	protein-coding	65.0	199.0	120.0	5.5	8.5	5.0
Merged-chr11-86724167-4	chr11	86723675	86724675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 8 of 31)	intron (NM_001003908, intron 8 of 31)	33392.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70100087-4	chr14	70099587	70100587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360404)	promoter-TSS (NM_001360404)	-6.0	NM_021328	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36989086-4	chr5	36988574	36989574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011716)	promoter-TSS (NM_011716)	-92.0	NM_011716	22393.0	Mm.20916	NM_011716	ENSMUSG00000039474	Wfs1	AI481085|wolframin	wolframin ER transmembrane glycoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108900351-4	chr3	108899848	108900848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10340.0	NM_001165965	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	2.5	23.5	7.5	4.0	24.0	11.5
Merged-chr6-97212220-4	chr6	97211734	97212734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022992, intron 1 of 2)	intron (NM_022992, intron 1 of 2)	1442.0	NM_022992	65106.0	Mm.291014	NM_022992	ENSMUSG00000035199	Arl6ip5	5930404D22Rik|AV001879|Aip-5|Gtrap3-18|addiscin	ADP-ribosylation factor-like 6 interacting protein 5	protein-coding	57.0	43.0	70.5	89.5	87.5	63.5
Merged-chr10-34096692-4	chr10	34096200	34097200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178908)	promoter-TSS (NM_178908)	-181.0	NM_178908	103511.0	Mm.66334	NM_178908	ENSMUSG00000049872	Fam26e	BB146404|Calhm5	family with sequence similarity 26, member E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85347695-4	chr12	85347218	85348218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 3 of 4)	intron (NM_026775, intron 3 of 4)	-8356.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25708183-1	chr7	25707683	25708683	+	1000.0	f0_c57.idr	Intergenic	Intergenic	10870.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99165030-4	chr9	99164532	99165532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24821.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0.5	5.5	4.5	0.5	6.5	1.0
Merged-chr13-110560767-4	chr13	110560270	110561270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	165726.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	5.0	38.5	23.5	31.0	40.5	34.5
Merged-chr2-32424149-4	chr2	32423639	32424639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290558)	promoter-TSS (NM_001290558)	-73.0	NM_001290558	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140606719-2	chr5	140606219	140607219	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008494)	promoter-TSS (NM_008494)	-622.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98716209-4	chr7	98715702	98716702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028410, exon 5 of 5)	exon (NM_028410, exon 5 of 5)	12955.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23954715-4	chr18	23954229	23955229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027007)	promoter-TSS (NM_027007)	41.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53141195-4	chr15	53140711	53141711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	204972.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17402433-4	chr17	17401921	17402921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025681)	promoter-TSS (NM_025681)	-265.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-51611840-4	chr6	51611325	51612325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66532.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-53344098-4	chr10	53343613	53344613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001141927, exon 3 of 3)	3' UTR (NM_001141927, exon 3 of 3)	6427.0	NM_001141927	18821.0	Mm.34145	NM_023129	ENSMUSG00000038583	Pln	Plb	phospholamban	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88683627-4	chr10	88683093	88684093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011461)	promoter-TSS (NM_011461)	-570.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34861138-10	chr18	34860605	34861605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007913)	promoter-TSS (NM_007913)	-102.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126971111-4	chr8	126970603	126971603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172762)	promoter-TSS (NM_172762)	-24.0	NM_172762	52202.0	Mm.28199	NM_172762	ENSMUSG00000033931	Rbm34	4930547K05Rik|6330444B11|D8Ertd233e	RNA binding motif protein 34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-47771310-2	chr12	47770810	47771810	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	-952535.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-149841071-4	chr1	149840601	149841601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 16 of 17)	intron (NM_008869, intron 16 of 17)	81338.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-23758971-4	chr19	23758465	23759465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177034)	promoter-TSS (NM_177034)	89.0	NM_177034	319924.0	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	15.5	17.0	13.5	13.5	9.0	14.0
Merged-chr2-120137617-4	chr2	120137086	120138086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 1 of 5)	intron (NM_133838, intron 1 of 5)	16989.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114667656-4	chr5	114667104	114668104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9183.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	2.5
Merged-chr5-139384776-4	chr5	139384269	139385269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	4130.0	NM_030258	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116652819-2	chr11	116652319	116653319	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030206, intron 1 of 3)	intron (NM_030206, intron 1 of 3)	1494.0	NM_030206	114886.0	Mm.34598	NM_030206	ENSMUSG00000020810	Cygb	3110001K20Rik|HGb|Staap	cytoglobin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-44048472-4	chr14	44047978	44048978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42060.0	NM_001011876	630952.0		NM_001011876	ENSMUSG00000072598	Ang6	EG630952	angiogenin, ribonuclease A family, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74237909-4	chr1	74237414	74238414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 2 of 10)	intron (NM_001357387, intron 2 of 10)	1397.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165691691-4	chr1	165691183	165692183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	16411.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19871403-4	chr7	19870908	19871908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10109.0	NM_001033419	330483.0	Mm.260192	NM_001033419	ENSMUSG00000014686	Ceacam16	Gm769	carcinoembryonic antigen-related cell adhesion molecule 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68204625-3	chr10	68204117	68205117	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 3 of 9)	intron (NM_023598, intron 3 of 9)	74109.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	8.0	19.5	6.0	121.5	214.0	205.0
Merged-chr7-110164272-4	chr7	110163785	110164785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42226.0	NM_009516	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-19776289-2	chr14	19775789	19776789	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008695, intron 4 of 20)	intron (NM_008695, intron 4 of 20)	25032.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127121234-4	chr10	127120712	127121712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001171026)	promoter-TSS (NM_001171026)	-52.0	NM_001171026	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69074107-2	chr11	69073607	69074607	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_028566)	TTS (NR_028566)	681.0	NR_028566	100216530.0	Mm.453052	NR_028566	ENSMUSG00000064899	Snord118	MBI-34	small nucleolar RNA, C/D box 118	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25282065-4	chr7	25281578	25282578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027882)	promoter-TSS (NM_027882)	-101.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-124658082-2	chr4	124657582	124658582	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011141, exon 1 of 1)	exon (NM_011141, exon 1 of 1)	436.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68204064-3	chr10	68203575	68204575	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 3 of 9)	intron (NM_023598, intron 3 of 9)	74651.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	7.0	18.0	1.5	153.5	201.5	216.0
Merged-chr6-94507298-4	chr6	94506793	94507793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026255, intron 1 of 9)	intron (NM_026255, intron 1 of 9)	6979.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155236509-4	chr2	155235992	155236992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291108)	promoter-TSS (NM_001291108)	-41.0	NR_111891	67068.0	Mm.23693	NM_025947	ENSMUSG00000047459	Dynlrb1	2010012N15Rik|2010320M17Rik|9430076K19Rik|AV124457|DNLC2A|Dncl2a|km23-1	dynein light chain roadblock-type 1	protein-coding	84.5	142.0	140.0	177.5	505.0	271.0
Merged-chr9-107261068-4	chr9	107260551	107261551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316691, intron 4 of 7)	intron (NM_001316691, intron 4 of 7)	28345.0	NM_001316691	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	0.0	2.0	4.0	0.0	2.0	1.0
Merged-chr7-92637132-4	chr7	92636654	92637654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028665)	promoter-TSS (NM_028665)	-12.0	NM_028665	73845.0	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	54.0	127.0	98.0	48.0	92.0	94.5
Merged-chr12-69357135-4	chr12	69356637	69357637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025441)	promoter-TSS (NM_025441)	39.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	4.5	8.0	9.0	8.0	3.5	7.0
Merged-chr3-89796527-4	chr3	89795997	89796997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	22888.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	23.5	58.5	48.5	13.5	35.0	32.0
Merged-chr13-36117524-4	chr13	36117030	36118030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024274)	promoter-TSS (NM_024274)	-113.0	NM_024274	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	19.0	23.5	20.5	19.5	35.0	27.0
Merged-chr11-61782974-2	chr11	61782474	61783474	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013881, intron 23 of 26)	RLTR17|LTR|ERVK	-20886.0	NM_001164243	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4779630-4	chr8	4779128	4780128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011369)	promoter-TSS (NM_011369)	-61.0	NM_011369	20419.0	Mm.37801	NM_011369	ENSMUSG00000022322	Shcbp1	mPAL	Shc SH2-domain binding protein 1	protein-coding	6.0	8.5	3.0	9.5	9.5	4.0
Merged-chr2-36238478-4	chr2	36237970	36238970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 5 of 10)	MamGypLTR3a|LTR|Gypsy	8044.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-107437907-4	chr5	107437443	107438443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001255991)	promoter-TSS (NM_001255991)	-54.0	NM_001255991	100503185.0	Mm.366650	NM_001255991	ENSMUSG00000111375	Btbd8	EG627196|Gm16115	BTB (POZ) domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32847329-4	chr2	32846823	32847823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009295)	promoter-TSS (NM_009295)	-86.0	NM_001113569	20910.0	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120236952-2	chr11	120236452	120237452	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001347621, exon 2 of 28)	5' UTR (NM_001347621, exon 2 of 28)	4005.0	NM_198423	268515.0	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55236235-4	chr19	55235724	55236724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 2 of 20)	intron (NM_001081076, intron 2 of 20)	5012.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-128103195-4	chr1	128102703	128103703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027678)	promoter-TSS (NM_027678)	-103.0	NM_181750	226412.0	Mm.221041	NM_181750	ENSMUSG00000056211	R3hdm1	R3hdm	R3H domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25460298-4	chr14	25459807	25460807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	CpG	1122.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66512558-4	chr9	66512079	66513079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175206, intron 1 of 1)	intron (NM_175206, intron 1 of 1)	2014.0	NM_175206	74165.0	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88573741-4	chr1	88573250	88574250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	22233.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-35223653-4	chr4	35223163	35224163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081343, intron 1 of 10)	intron (NM_001081343, intron 1 of 10)	2217.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145859507-4	chr2	145858994	145859994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 8 of 12)	intron (NM_028724, intron 8 of 12)	-43747.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	43.5	48.0	65.0	39.5	55.5	33.0
Merged-chr7-63914260-4	chr7	63913737	63914737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-2620.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	151.5	241.5	154.5	69.5	134.5	130.0
Merged-chr7-110060960-1	chr7	110060460	110061460	+	1000.0	f0_balb.idr	promoter-TSS (NM_009281)	promoter-TSS (NM_009281)	-742.0	NM_009281	20841.0	Mm.10815	NM_009281	ENSMUSG00000061079	Zfp143	AA959806|AU015869|D7Ertd805e|KRAB14|SBF|Staf|Zfp79|Zfp80-rs1|Znf143|pHZ-1	zinc finger protein 143	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55089377-4	chr14	55088851	55089851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039198, intron 1 of 9)	intron (NM_001039198, intron 1 of 9)	2697.0	NM_001039198	239102.0	Mm.441113	NM_001039198	ENSMUSG00000040721	Zfhx2	ZFH-5	zinc finger homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100372068-4	chr7	100371568	100372568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028292)	promoter-TSS (NM_028292)	-165.0	NM_001017985	277939.0	Mm.276374	NM_001017985	ENSMUSG00000047248	C2cd3	AU020772	C2 calcium-dependent domain containing 3	protein-coding	19.5	21.5	32.0	17.0	15.5	22.0
Merged-chr9-61946905-4	chr9	61946424	61947424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024245)	promoter-TSS (NM_024245)	-125.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-89740419-4	chr13	89739947	89740947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081249, intron 1 of 14)	intron (NM_001081249, intron 1 of 14)	2065.0	NM_001081249	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3686670-4	chr12	3686148	3687148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 8 of 17)	intron (NM_001162465, intron 8 of 17)	113664.0	NM_007886	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69905284-2	chr8	69904800	69905800	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2742.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	3.5	10.0	0.5	9.0	9.5	1.5
Merged-chr2-128943917-5	chr2	128943412	128944412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020594, exon 1 of 9)	exon (NM_020594, exon 1 of 9)	108.0	NM_020594	57432.0	Mm.11675	NM_020594	ENSMUSG00000027387	Zc3h8	AU020882|E130108N08Rik|Fliz1|Zc3hdc8	zinc finger CCCH type containing 8	protein-coding	145.0	221.0	129.5	119.5	228.0	114.5
Merged-chr9-65535390-4	chr9	65534883	65535883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44704.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-183264279-4	chr1	183263828	183264828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H2|LTR|ERVL-MaLR	-32732.0	NM_181732	108909.0	Mm.290502	NM_145626	ENSMUSG00000042901	Aida	2610208M17Rik|BC004835	axin interactor, dorsalization associated	protein-coding	13.0	46.0	26.5	12.0	47.0	27.0
Merged-chr17-84101822-4	chr17	84101304	84102304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23144.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4839810-4	chr16	4839307	4840307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030192, intron 1 of 15)	MIRb|SINE|MIR	4391.0	NM_030192	78809.0	Mm.325551	NM_030192	ENSMUSG00000022518	4930562C15Rik	-	RIKEN cDNA 4930562C15 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-5302582-4	chr15	5302068	5303068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58381.0	NM_008965	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7337304-4	chr9	7336788	7337788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7109.0	NM_001320077	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-73024657-4	chr11	73024152	73025152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018883, intron 1 of 15)	intron (NM_018883, intron 1 of 15)	5644.0	NM_018883	55984.0	Mm.9998	NM_018883	ENSMUSG00000020785	Camkk1	AI846603|CaMKKalpha|Camkk	calcium/calmodulin-dependent protein kinase kinase 1, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30794831-4	chr2	30794324	30795324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_198000)	TTS (NM_198000)	6913.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114276156-4	chr7	114275655	114276655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011965)	promoter-TSS (NM_011965)	-39.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	40.5	92.0	97.0	58.5	57.0	57.5
Merged-chr3-127780492-4	chr3	127779992	127780992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027808)	promoter-TSS (NM_027808)	35.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	47.5	127.0	150.5	88.5	141.0	123.0
Merged-chr17-74454849-4	chr17	74454357	74455357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 1 of 8)	intron (NM_001033367, intron 1 of 8)	4251.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105999198-4	chr1	105998685	105999685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122675, intron 1 of 12)	intron (NM_001122675, intron 1 of 12)	8779.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83733255-4	chr11	83732762	83733762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	-13678.0	NM_183249	66107.0	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-92483762-4	chr2	92483262	92484262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-23244.0	NM_145832	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80677328-4	chr10	80676831	80677831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1038.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142496794-4	chr3	142496295	142497295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153564)	promoter-TSS (NM_153564)	-139.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-37423067-4	chr2	37422557	37423557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290642)	promoter-TSS (NM_001290642)	-154.0	NM_001290642	319817.0	Mm.288785	NM_001100591	ENSMUSG00000075376	Rc3h2	2900024N03Rik|9430019J22Rik|D930043C02Rik|Mnab|Rnf164	ring finger and CCCH-type zinc finger domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3187719-8	chr11	3187172	3188172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 2 of 32)	B1_Mus1|SINE|Alu	5791.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129100994-4	chr2	129100519	129101519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009086)	promoter-TSS (NM_009086)	23.0	NM_009086	20017.0	Mm.259078	NM_009086	ENSMUSG00000027395	Polr1b	128kDa|D630020H17Rik|RPA116|RPA135|RPA2|Rpo1-2	polymerase (RNA) I polypeptide B	protein-coding	5.5	24.0	22.0	2.0	18.0	23.5
Merged-chr4-139381693-2	chr4	139381193	139382193	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160319, intron 1 of 105)	intron (NM_001160319, intron 1 of 105)	1034.0	NM_001160319	69116.0	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	30.5	41.5	39.0	3.0	61.5	42.5
Merged-chr15-100728750-4	chr15	100728263	100729263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172451, intron 1 of 11)	intron (NM_172451, intron 1 of 11)	613.0	NM_001161767	207839.0	Mm.22969	NM_172451	ENSMUSG00000037280	Galnt6	4632410F13|AW047994|GalNAc-T6	polypeptide N-acetylgalactosaminyltransferase 6	protein-coding	115.5	255.0	197.0	96.5	253.0	255.0
Merged-chr4-34489-1	chr4	33989	34989	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-3137594.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165034817-4	chr2	165034280	165035280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144892)	promoter-TSS (NM_144892)	-1.0	NM_144892	228869.0	Mm.233080	NM_144892	ENSMUSG00000039804	Ncoa5	CIA	nuclear receptor coactivator 5	protein-coding	4.5	12.5	0.5	4.5	1.5	1.5
Merged-chr5-92496288-2	chr5	92495788	92496788	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	RSINE1|SINE|B4	9369.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23415358-3	chr18	23414844	23415844	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010087)	promoter-TSS (NM_010087)	-65.0	NM_010087	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110399068-4	chr11	110398586	110399586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011943)	promoter-TSS (NM_011943)	-16.0	NM_001356345	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170175051-4	chr1	170174547	170175547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305045)	promoter-TSS (NM_001305045)	-83.0	NM_001305045	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88708812-4	chr10	88708299	88709299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22302.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24367599-4	chr2	24367088	24368088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355231)	promoter-TSS (NM_001355231)	-87.0	NM_001355231	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-24707304-3	chr6	24706804	24707804	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25941.0	NM_028920	74409.0	Mm.87331	NM_028920	ENSMUSG00000029679	Hyal6	4932701A20Rik|Hyal-ps1|Hyalp1	hyaluronoglucosaminidase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67729433-4	chr10	67728951	67729951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157492.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69934362-4	chr11	69933869	69934869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1530.0	NM_016875	53422.0	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116334177-4	chr7	116333685	116334685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026533)	promoter-TSS (NM_026533)	5.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134791381-4	chr6	134790869	134791869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151454)	promoter-TSS (NR_151454)	-991.0	NR_151454	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	89.0	268.0	154.5	66.5	160.5	100.5
Merged-chr18-12974140-6	chr18	12973576	12974576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357396)	promoter-TSS (NM_001357396)	-384.0	NM_001357396	16210.0	Mm.8154	NM_008378	ENSMUSG00000024423	Impact	E430016J11Rik	impact, RWD domain protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-51865548-4	chr15	51865035	51866035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080635)	promoter-TSS (NM_080635)	-74.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55505014-4	chr16	55504589	55505589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10358.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58424099-4	chr1	58423616	58424616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027853)	promoter-TSS (NR_027853)	-28.0	NM_001042634	12747.0	Mm.1761	NM_009905	ENSMUSG00000026034	Clk1	STY	CDC-like kinase 1	protein-coding	3.5	23.0	12.5	12.0	73.0	48.0
Merged-chr6-87499999-4	chr6	87499494	87500494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	-3667.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	84.5	139.0	135.0	75.0	152.0	94.0
Merged-chr10-10654926-2	chr10	10654426	10655426	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3c|LINE|L1	48981.0	NR_033630	382450.0	Mm.422788	NR_033630	ENSMUSG00000098065	Gm5177	EG382450	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114772063-4	chr5	114771567	114772567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077359, intron 1 of 18)	intron (NM_001077359, intron 1 of 18)	1424.0	NM_019834	26431.0	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120101410-4	chr8	120100904	120101904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133967)	promoter-TSS (NM_133967)	68.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100500796-4	chr5	100500290	100501290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172714)	promoter-TSS (NM_172714)	-151.0	NM_001359914	231506.0	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-19925234-2	chr11	19924734	19925734	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	CpG	792.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50856964-4	chr9	50856467	50857467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034085)	promoter-TSS (NM_001034085)	43.0	NM_001286553	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	33.0	33.0	43.5	9.5	45.5	17.5
Merged-chr18-34931476-1	chr18	34930976	34931976	+	1000.0	f0_balb.idr	intron (NM_144866, intron 2 of 10)	CpG	527.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-11691043-3	chr18	11690544	11691544	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081223, intron 4 of 18)	RLTR13B1|LTR|ERVK	33695.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	22.0	46.5	28.5	8.0	29.0	11.5
Merged-chr1-36691455-4	chr1	36690956	36691956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009942)	promoter-TSS (NM_009942)	-31.0	NM_009942	12859.0	Mm.180182	NM_009942	ENSMUSG00000061518	Cox5b	-	cytochrome c oxidase subunit Vb	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25768867-2	chr7	25768367	25769367	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 12 of 19)	PB1D10|SINE|Alu	-14108.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4236515-4	chr12	4236017	4237017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001204912, exon 2 of 2)	exon (NM_001204912, exon 2 of 2)	2490.0	NM_001204912	69709.0	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121878474-4	chr14	121877982	121878982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131000)	promoter-TSS (NR_131000)	22.0	NR_131000	78312.0	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	52.5	162.0	106.5	45.5	110.5	107.0
Merged-chr14-76757641-3	chr14	76757139	76758139	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2492.0	NR_153763	73883.0	Mm.489041	NR_153763		4930431P22Rik	-	RIKEN cDNA 4930431P22 gene	ncRNA	41.5	68.0	47.5	6.5	13.5	16.5
Merged-chr5-138262270-4	chr5	138261759	138262759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153161, exon 6 of 11)	exon (NM_153161, exon 6 of 11)	-1786.0	NR_045821	69004.0	Mm.439868	NR_045821	ENSMUSG00000085227	6330418K02Rik	-	RIKEN cDNA 6330418K02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191182531-4	chr1	191182007	191183007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007498, intron 1 of 3)	CpG	826.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155100867-4	chr2	155100397	155101397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040634)	promoter-TSS (NR_040634)	-818.0	NR_040634	100504268.0	Mm.410858	NR_040634	ENSMUSG00000087254	2310005A03Rik	-	RIKEN cDNA 2310005A03 gene	ncRNA	39.0	176.0	156.5	49.5	94.5	64.5
Merged-chr12-73907872-4	chr12	73907356	73908356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010431)	promoter-TSS (NM_010431)	-11.0	NM_010431	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-33147685-4	chr12	33147186	33148186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015602)	promoter-TSS (NR_015602)	0.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	24.0	22.5	40.0	21.5	21.0	32.0
Merged-chr15-83012383-2	chr15	83011883	83012883	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028728, intron 3 of 5)	(GGAGA)n|Simple_repeat|Simple_repeat	10755.0	NM_028728	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-119063583-4	chr10	119063102	119064102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13103.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-5320346-4	chr5	5319856	5320856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	-54288.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	29.5	43.5	28.5	14.5	45.0	21.5
Merged-chr2-128128072-4	chr2	128127574	128128574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284410, intron 1 of 3)	CpG-8520	499.0	NM_001284410	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	3.5	3.0	4.5	0.0	5.5	1.0
Merged-chr3-51183730-4	chr3	51183224	51184224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-40723.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	97.0	284.5	130.5	17.5	84.0	74.0
Merged-chr8-18936896-4	chr8	18936392	18937392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176951, intron 6 of 6)	(CAAAA)n|Simple_repeat|Simple_repeat	13979.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	0.0	6.5	0.0	0.0	6.0	2.0
Merged-chr11-54068268-6	chr11	54067772	54068772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019417, intron 1 of 6)	intron (NM_019417, intron 1 of 6)	745.0	NM_019417	30794.0	Mm.21830	NM_019417	ENSMUSG00000020388	Pdlim4	Ril	PDZ and LIM domain 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151599056-4	chr1	151598560	151599560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	27687.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24169597-4	chr17	24169097	24170097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361535)	promoter-TSS (NM_001361535)	81.0	NM_001361532	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	257.0	632.0	474.0	190.5	534.0	343.0
Merged-chr12-111270060-2	chr12	111269560	111270560	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1036.0	NM_033603	93835.0	Mm.197639	NM_033603	ENSMUSG00000021278	Amn	-	amnionless	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-50982918-4	chr2	50982428	50983428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73244.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-8649771-4	chr8	8649294	8650294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010111, intron 1 of 4)	intron (NM_010111, intron 1 of 4)	10979.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67537600-6	chr10	67537099	67538099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010118)	promoter-TSS (NM_010118)	-270.0	NM_010118	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-194992785-4	chr1	194992296	194993296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15837.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88255069-4	chr7	88254581	88255581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-23004.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-145738153-4	chr3	145737674	145738674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20518.0	NM_026993	69219.0	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64753315-4	chr1	64752821	64753821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15571.0	NM_022721	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50410084-4	chr17	50409587	50410587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99460.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0.0	6.0	3.0	4.5	11.5	2.5
Merged-chr11-45008366-2	chr11	45007866	45008866	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007897)	TTS (NM_007897)	108562.0	NR_045100	100504255.0	Mm.123608	NR_045100	ENSMUSG00000084773	Gm12159	-	predicted gene 12159	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13296622-4	chr9	13296129	13297129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49673.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22192870-4	chr8	22192354	22193354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027338)	promoter-TSS (NM_027338)	-6.0	NM_027338	70160.0	Mm.41453	NM_027338	ENSMUSG00000031479	Vps36	1700010A24Rik|2210415M20Rik|2810408E15Rik|Eap45	vacuolar protein sorting 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5819898-4	chr18	5819387	5820387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	227240.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43462886-4	chr1	43462400	43463400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	17149.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11103952-4	chr8	11103438	11104438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95508.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34187591-6	chr17	34187085	34188085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013683)	promoter-TSS (NM_013683)	29.0	NM_013683	21354.0	Mm.482076	NM_013683	ENSMUSG00000037321	Tap1	ABC17|APT1|Abcb2|Ham-1|Ham1|MTP1|PSF1|RING4|TAP|Tap-1|Y3	transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	54.5	179.5	99.0	33.5	132.5	73.0
Merged-chr17-31109411-1	chr17	31108911	31109911	+	1000.0	f1_balb.idr	intron (NM_009593, intron 10 of 14)	intron (NM_009593, intron 10 of 14)	20200.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	7.5	3.0	20.0	0.5	20.5	10.5
Merged-chr12-38788785-4	chr12	38788279	38789279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163154, intron 1 of 9)	intron (NM_001163154, intron 1 of 9)	5068.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	8.5	16.0	6.5	4.5	7.5	5.0
Merged-chr12-40017178-4	chr12	40016667	40017667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20209.0	NM_007487	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0.0	2.5	14.5	4.5	5.0	5.0
Merged-chr5-76905522-4	chr5	76905013	76906013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173765)	promoter-TSS (NM_173765)	1.0	NM_173765	231326.0	Mm.39271	NM_173765	ENSMUSG00000055923	Aasdh	A230062G08Rik|A830035E16|Acsf4|U26	aminoadipate-semialdehyde dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36744615-4	chr18	36744107	36745107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011879)	promoter-TSS (NM_011879)	-20.0	NM_010885	17991.0	Mm.29867	NM_010885	ENSMUSG00000014294	Ndufa2	AV000592|B8|C1-B8|CI-B8	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2	protein-coding	5.0	33.5	28.5	12.0	28.5	21.5
Merged-chr10-117846077-4	chr10	117845607	117846607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024457)	promoter-TSS (NM_024457)	-133.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129238036-4	chr6	129237530	129238530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040265)	promoter-TSS (NR_040265)	15.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	39.0	78.0	103.5	41.5	87.0	52.0
Merged-chr14-19418821-4	chr14	19418324	19419324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	183763.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101908498-4	chr7	101907978	101908978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025605, intron 1 of 4)	intron (NM_025605, intron 1 of 4)	-2119.0	NM_001081679	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45006706-2	chr13	45006206	45007206	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4610.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	9.0	7.0	7.5	10.0	4.5	18.5
Merged-chr4-133479979-4	chr4	133479486	133480486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175307)	promoter-TSS (NM_175307)	-147.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	0.0	10.0	6.5	2.0	8.5	1.0
Merged-chr3-90267924-4	chr3	90267417	90268417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356483, intron 2 of 27)	MIR3|SINE|MIR	1403.0	NM_201407	229541.0	Mm.30571	NM_201407	ENSMUSG00000042404	Dennd4b	-	DENN/MADD domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50552183-5	chr16	50551686	50552686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040379, intron 4 of 5)	MLTR11B|LTR|ERVK	23684.0	NR_040379	619312.0	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115163254-4	chr11	115162769	115163769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012030)	promoter-TSS (NM_012030)	-72.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	46.5	50.5	40.0	16.0	50.5	63.5
Merged-chr1-120073998-6	chr1	120073516	120074516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019432)	promoter-TSS (NM_019432)	-236.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	78.0	256.5	165.5	75.5	149.5	120.5
Merged-chr5-115535113-4	chr5	115534603	115535603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	-24364.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	6.0	44.0	11.0	3.5	35.5	16.5
Merged-chr8-61606995-4	chr8	61606502	61607502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	(CA)n|Simple_repeat|Simple_repeat	-15833.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	101.0	182.0	140.5	97.5	175.0	121.0
Merged-chr16-76366071-4	chr16	76365588	76366588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	6961.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-63875064-4	chr5	63874576	63875576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	62581.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97336446-2	chr11	97335899	97336899	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081220, exon 11 of 11)	exon (NM_001081220, exon 11 of 11)	15674.0	NM_001081220	217143.0	Mm.32622	NM_175453	ENSMUSG00000070337	Gpr179	5330439C02Rik|Gpr158l1	G protein-coupled receptor 179	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr10-80827013-4	chr10	80826512	80827512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301034, intron 1 of 4)	CpG	316.0	NR_027656	100041965.0	Mm.328806	NR_027656		Oaz1-ps	Gm1823|Gm9786|Oaz-ps	ornithine decarboxylase antizyme 1, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106231521-4	chr1	106231019	106232019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 1 of 16)	Lx7|LINE|L1	59650.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127016781-4	chr7	127016317	127017317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001102563)	TTS (NM_001102563)	535.0	NM_030240	67278.0	Mm.345385	NM_030240	ENSMUSG00000107068	Pagr1a	2900092E17Rik|C77040|PA1|PAGR1	PAXIP1 associated glutamate rich protein 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108659819-3	chr6	108659325	108660325	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011498)	promoter-TSS (NM_011498)	-804.0	NM_011498	20893.0	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-30968946-3	chr3	30968471	30969471	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165954, intron 1 of 14)	CpG	444.0	NM_001165954	241915.0	Mm.233173	NM_153421	ENSMUSG00000037652	Phc3	E030046K01Rik|Edr3|Hph3	polyhomeotic 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4769133-4	chr12	4768644	4769644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361147)	promoter-TSS (NM_001361147)	123.0	NM_175431	207921.0	Mm.184898	NM_175431	ENSMUSG00000050545	Fam228b	A830093I24Rik	family with sequence similarity 228, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-138527996-4	chr3	138527489	138528489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007917, intron 2 of 7)	CpG	721.0	NM_001313980	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	6.5	3.0	1.0	0.0	1.0	1.0
Merged-chr18-9492285-4	chr18	9491790	9492790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAGGA)n|Simple_repeat|Simple_repeat	-42136.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-71238131-4	chr10	71237627	71238627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009360)	promoter-TSS (NM_009360)	-83.0	NM_009360	21780.0	Mm.229292	NM_009360	ENSMUSG00000003923	Tfam	AI661103|Hmgts|mtTFA|tsHMG	transcription factor A, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39578695-4	chr1	39578196	39579196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1349.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113141527-4	chr12	113141017	113142017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347443, intron 1 of 6)	intron (NM_001347443, intron 1 of 6)	912.0	NM_001347443	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106892048-4	chr9	106891564	106892564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029103)	promoter-TSS (NM_029103)	-126.0	NM_029103	74840.0	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	57.5	89.0	115.5	29.5	97.0	64.0
Merged-chr18-66476532-4	chr18	66476031	66477031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17927.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	36.0	66.5	29.5	34.0	64.5	29.5
Merged-chr4-115847639-4	chr4	115847186	115848186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285487, intron 2 of 14)	intron (NM_001285487, intron 2 of 14)	8488.0	NM_001355174	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	5.5	10.5	16.0	14.5	36.5	22.0
Merged-chr19-5849996-4	chr19	5849504	5850504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026169)	TTS (NM_026169)	-4524.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8664727-4	chr3	8664230	8665230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010423, exon 5 of 5)	exon (NM_010423, exon 5 of 5)	2308.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21848388-4	chr14	21847925	21848925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_176925, exon 1 of 3)	5' UTR (NM_176925, exon 1 of 3)	485.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	0.0	7.5	5.0	0.0	20.0	7.5
Merged-chr15-31331949-4	chr15	31331463	31332463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027496, intron 1 of 3)	MLT1A0|LTR|ERVL-MaLR	35796.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4593028-4	chr12	4592546	4593546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198968)	promoter-TSS (NM_001198968)	38.0	NM_001198968	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121717927-2	chr9	121717427	121718427	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11B|LTR|ERVK	-1254.0	NM_010918	18087.0	Mm.32842	NM_010918	ENSMUSG00000032525	Nktr	5330401F18Rik|D9Wsu172e	natural killer tumor recognition sequence	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59292760-4	chr10	59292270	59293270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30526.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58988977-4	chr15	58988473	58989473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	55163.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-38129226-2	chr1	38128752	38129752	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001359288, intron 1 of 25)	CpG	414.0	NM_001359287	56210.0	Mm.389103	NM_019570	ENSMUSG00000026082	Rev1	1110027I23Rik|AU022044|Rev1l	REV1, DNA directed polymerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141734481-1	chr4	141733981	141734981	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-11062.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	15.5	27.0	10.0	17.0	24.0	6.5
Merged-chr11-59526876-4	chr11	59526373	59527373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14696.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8842518-2	chr10	8842018	8843018	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	ORR1F|LTR|ERVL-MaLR	43552.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	11.0	26.5	17.0	27.5	34.0	20.0
Merged-chr4-140964217-4	chr4	140963722	140964722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355515, intron 1 of 7)	intron (NM_001355515, intron 1 of 7)	2951.0	NM_023374	67680.0	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50499580-4	chr17	50499066	50500066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9981.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	24.5	57.0	55.5	25.5	32.0	17.5
Merged-chr8-14888749-4	chr8	14888227	14889227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_012000, exon 1 of 3)	5' UTR (NM_012000, exon 1 of 3)	191.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125572671-4	chr6	125572185	125573185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 6 of 51)	MTD|LTR|ERVL-MaLR	19737.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40641049-4	chr19	40640567	40641567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	-18703.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	35.0	125.5	67.0	42.0	112.0	47.0
Merged-chr15-59552654-4	chr15	59552172	59553172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-95982.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-15054643-2	chr2	15054143	15055143	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029466)	promoter-TSS (NM_029466)	229.0	NM_001165941	74455.0	Mm.478923	NM_028950	ENSMUSG00000026707	Nsun6	4933403D21Rik|4933414E04Rik|NOPD1	NOL1/NOP2/Sun domain family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70608403-4	chr8	70607916	70608916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133772)	promoter-TSS (NM_133772)	-102.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	73.0	228.5	112.0	49.5	201.5	96.0
Merged-chr6-84027821-4	chr6	84027331	84028331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310152, intron 1 of 53)	intron (NM_001310152, intron 1 of 53)	8445.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	4.0	2.5	10.5	1.5	11.0	21.0
Merged-chr14-32513516-4	chr14	32513025	32514025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081221)	promoter-TSS (NM_001081221)	4.0	NM_001081221	319955.0	Mm.318310	NM_001081221	ENSMUSG00000054051	Ercc6	4732403I04|C130058G22Rik|CSB	excision repair cross-complementing rodent repair deficiency, complementation group 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119984656-2	chr9	119984156	119985156	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153287)	promoter-TSS (NM_153287)	86.0	NM_153287	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76202196-6	chr16	76201746	76202746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79633.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87935916-2	chr3	87935416	87936416	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177663, intron 2 of 3)	MTEa-int|LTR|ERVL-MaLR	5602.0	NM_177663	229504.0	Mm.45744	NM_177663	ENSMUSG00000048039	Isg20l2	4930429N24|C80587	interferon stimulated exonuclease gene 20-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80826440-4	chr10	80825948	80826948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027656)	promoter-TSS (NR_027656)	-208.0	NM_001301034	18245.0	Mm.398119	NM_008753	ENSMUSG00000035242	Oaz1	AZ-1|AZ1|Antizyme|ODC-Az|Oaz	ornithine decarboxylase antizyme 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116456488-2	chr7	116455988	116456988	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-13030.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	9.5	20.5	10.0	9.5	17.5	10.0
Merged-chr3-5575928-1	chr3	5575428	5576428	+	1000.0	f0_balb.idr	intron (NM_008994, intron 1 of 5)	CpG	320.0	NM_001163301	19302.0	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	77.5	176.0	132.5	73.5	205.0	143.0
Merged-chr1-173767040-4	chr1	173766543	173767543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008329)	promoter-TSS (NM_008329)	-124.0	NM_008329	15951.0	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	17.0	88.0	36.5	11.0	32.0	17.0
Merged-chr10-80986216-2	chr10	80985716	80986716	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038655, intron 2 of 3)	L1MB5|LINE|L1	15149.0	NM_001038655	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126832107-4	chr8	126831615	126832615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16905.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42639730-4	chr19	42639209	42640209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26903.0	NM_053083	67573.0	Mm.178767	NM_053083	ENSMUSG00000025185	Loxl4	4833426I20Rik|Loxc	lysyl oxidase-like 4	protein-coding	0.0	0.5	0.0	0.0	2.5	5.0
Merged-chr3-108890938-4	chr3	108890447	108891447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177091)	promoter-TSS (NM_177091)	-939.0	NM_001165965	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	30.0	63.5	26.0	33.0	56.5	19.5
Merged-chr8-56294576-4	chr8	56294074	56295074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008278)	promoter-TSS (NM_008278)	22.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	16.5	40.0	15.5	0.0	3.5	7.5
Merged-chr13-13524298-4	chr13	13523771	13524771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66138.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25833010-4	chr17	25832500	25833500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019719, exon 1 of 7)	5' UTR (NM_019719, exon 1 of 7)	361.0	NM_019719	56424.0	Mm.277599	NM_019719	ENSMUSG00000039615	Stub1	0610033N24Rik|2210017D18Rik|2310040B03Rik|AW046544|Chip	STIP1 homology and U-Box containing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-74350216-4	chr13	74349718	74350718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023281)	promoter-TSS (NM_023281)	22.0	NM_023281	66945.0	Mm.158231	NM_023281	ENSMUSG00000021577	Sdha	1500032O14Rik|2310034D06Rik|4921513A11|C81073|FP|SDH2|SDHF	succinate dehydrogenase complex, subunit A, flavoprotein (Fp)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55368620-4	chr12	55368130	55369130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025373, intron 4 of 6)	intron (NM_025373, intron 4 of 6)	-15592.0	NM_001310583	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21567380-4	chr5	21566872	21567872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028977, intron 2 of 3)	intron (NM_028977, intron 2 of 3)	23845.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-42692789-4	chr7	42692292	42693292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008427)	promoter-TSS (NM_001008427)	-74.0	NM_001008427	434179.0	Mm.284947	NM_001008427	ENSMUSG00000069727	Zfp975	EG434179|Gm5595|mszf88	zinc finger protein 975	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-115997119-4	chr3	115996640	115997640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023214, intron 2 of 10)	U6|snRNA|snRNA	10266.0	NM_023214	66500.0	Mm.34550	NM_023214	ENSMUSG00000054414	Slc30a7	1810059J10Rik|2610034N15Rik|4833428C12Rik|AI467242|ZnT-7|ZnT7|Zntl2	solute carrier family 30 (zinc transporter), member 7	protein-coding	24.5	45.5	50.0	13.5	53.0	50.5
Merged-chr10-58231943-2	chr10	58231443	58232443	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081954, exon 1 of 1)	exon (NM_001081954, exon 1 of 1)	732.0	NM_001081954	664783.0	Mm.482575	NM_001081954		Dux	AW822073|Dux4|Duxbl|EG664783	double homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21180129-7	chr13	21179621	21180621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009054, exon 1 of 8)	5' UTR (NM_009054, exon 1 of 8)	190.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	10.5	23.5	30.0	8.5	22.0	42.0
Merged-chr11-79087178-2	chr11	79086678	79087678	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	-27342.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139199858-4	chr4	139199341	139200341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	5730.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	96.0	227.5	150.5	91.5	251.0	165.0
Merged-chr1-115682-1	chr1	115182	116182	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	3555816.0	NM_001011874	497097.0	Mm.454496	NM_001011874	ENSMUSG00000051951	Xkr4	AY534250|Gm210|XRG4|mKIAA1889	X-linked Kx blood group related 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89211291-4	chr15	89210802	89211802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027805)	promoter-TSS (NM_027805)	-257.0	NM_026813	71474.0	Mm.184055	NM_026813	ENSMUSG00000036561	Ppp6r2	1110033O10Rik|8430411H09Rik|B230107H12Rik|Pp6r2|Saps2	protein phosphatase 6, regulatory subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6251321-4	chr2	6250822	6251822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 2 of 6)	intron (NR_040333, intron 2 of 6)	-38328.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110685776-4	chr9	110685280	110686280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	29277.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7841931-4	chr10	7841398	7842398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172785, intron 2 of 5)	intron (NM_172785, intron 2 of 5)	5517.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-108158668-4	chr13	108158166	108159166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362403)	promoter-TSS (NM_001362403)	-41.0	NM_001127346	75597.0	Mm.276040	NM_001127346	ENSMUSG00000068184	Ndufaf2	1810058I14Rik|C86051|Ndufa12l|mimitin	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2	protein-coding	7.5	21.5	7.0	8.5	23.5	11.5
Merged-chr6-108659516-4	chr6	108659010	108660010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104577, intron 1 of 6)	CpG	-1119.0	NM_011498	20893.0	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	74.0	149.5	98.0	78.0	169.5	133.5
Merged-chr1-177483769-4	chr1	177483263	177484263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	37942.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122736970-4	chr10	122736475	122737475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	57660.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133170290-4	chr4	133169810	133170810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	-25345.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	119.0	340.0	214.0	107.5	342.0	196.0
Merged-chr13-10100894-2	chr13	10100394	10101394	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 3 of 4)	intron (NM_033269, intron 3 of 4)	259909.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115853498-4	chr6	115853012	115854012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031177)	promoter-TSS (NM_031177)	-16.0	NM_001167763	81896.0	Mm.333335	NM_031177	ENSMUSG00000030323	Ift122	C86139|Wdr10|sopb	intraflagellar transport 122	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103761294-4	chr2	103760786	103761786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153126)	promoter-TSS (NM_153126)	-16.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	13.0	44.5	30.0	9.0	40.5	17.5
Merged-chr2-124679732-2	chr2	124679232	124680232	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26151.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-34083399-2	chr15	34082899	34083899	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026002, exon 1 of 12)	exon (NM_026002, exon 1 of 12)	680.0	NM_001357925	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	92.0	82.5	100.5	52.5	129.0	91.5
Merged-chr5-145201504-2	chr5	145201005	145202005	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_023322, exon 1 of 3)	exon (NM_023322, exon 1 of 3)	377.0	NM_023322	67235.0	Mm.432480	NM_023322	ENSMUSG00000029627	Zkscan14	2310046C23Rik|2810437E14Rik|Zfp99|Znf394	zinc finger with KRAB and SCAN domains 14	protein-coding	88.0	184.5	110.5	66.5	174.0	185.5
Merged-chr2-71388457-2	chr2	71387957	71388957	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026115)	promoter-TSS (NM_026115)	-803.0	NM_026115	107435.0	Mm.272472	NM_026115	ENSMUSG00000027018	Hat1	2410071B14Rik|AA536933|Hat-1|KAT1	histone aminotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69122767-4	chr11	69122248	69123248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_033041, exon 4 of 4)	exon (NM_033041, exon 4 of 4)	2295.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-35105737-4	chr5	35105237	35106237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013587)	promoter-TSS (NM_013587)	-40.0	NM_013587	16976.0	Mm.277661	NM_013587	ENSMUSG00000029103	Lrpap1	AA617339|AI790446|AU042172|C77774|HBP44|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98375557-7	chr12	98375062	98376062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	106927.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23255763-4	chr11	23255258	23256258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134014)	promoter-TSS (NM_134014)	-283.0	NM_001035226	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3823833-4	chr12	3823319	3824319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	16659.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-49451582-4	chr2	49451133	49452133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172663, exon 1 of 14)	5' UTR (NM_172663, exon 1 of 14)	147.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9763225-4	chr13	9762714	9763714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347474, intron 1 of 14)	intron (NM_001347474, intron 1 of 14)	596.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-66438059-4	chr8	66437556	66438556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 6 of 7)	intron (NM_175188, intron 6 of 7)	48474.0	NM_025465	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-125247513-6	chr2	125247006	125248006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023595)	promoter-TSS (NM_023595)	-9.0	NM_023595	110074.0	Mm.282499	NM_023595	ENSMUSG00000027203	Dut	5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase	deoxyuridine triphosphatase	protein-coding	0.0	0.0	5.0	0.0	4.5	2.5
Merged-chr16-35869322-4	chr16	35868840	35869840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039530, intron 1 of 16)	intron (NM_001039530, intron 1 of 16)	2042.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118709870-4	chr10	118709346	118710346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-153321.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25802269-2	chr7	25801769	25802769	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028775)	TTS (NM_028775)	-13536.0	NM_001190975	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53783436-4	chr11	53782930	53783930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12957.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80115382-4	chr7	80114872	80115872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173011)	promoter-TSS (NM_173011)	-22.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-54115477-2	chr10	54114977	54115977	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	39555.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-106759334-2	chr3	106758834	106759834	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007651, exon 8 of 8)	3' UTR (NM_007651, exon 8 of 8)	30815.0	NM_007651	12508.0	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-79841143-2	chr17	79840643	79841643	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	54980.0	NM_178050	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19267223-4	chr7	19266721	19267721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009499, intron 1 of 12)	intron (NM_009499, intron 1 of 12)	4633.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	74.0	218.5	169.5	121.0	276.5	145.0
Merged-chr15-99342820-4	chr15	99342322	99343322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310622, intron 1 of 25)	intron (NM_001310622, intron 1 of 25)	27660.0	NM_001310623	22379.0	Mm.29043	NM_011711	ENSMUSG00000023008	Fmnl3	2700073B04Rik|FBP11|Wbp3|mKIAA2014	formin-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-84606306-3	chr16	84605802	84606802	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73487.0	NR_040537	78023.0	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	0.0	0.0	5.0	0.0	0.0	2.5
Merged-chr2-4501879-4	chr2	4501414	4502414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 5 of 23)	HAL1|LINE|L1	-57840.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173420520-4	chr1	173420030	173421030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013779)	promoter-TSS (NM_001013779)	-74.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	20.0	48.5	27.5	22.0	32.0	21.5
Merged-chr2-32857815-4	chr2	32857328	32858328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10591.0	NM_001113569	20910.0	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-57808752-4	chr14	57808258	57809258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198605, intron 7 of 8)	intron (NM_198605, intron 7 of 8)	10334.0	NR_037238	100526476.0		NR_037238	ENSMUSG00000092784	Mir3077	mir-3077|mmu-mir-3077	microRNA 3077	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49215590-1	chr13	49215090	49216090	+	1000.0	f0_c57.idr	intron (NM_026738, intron 1 of 5)	CpG	436.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102208997-2	chr11	102208497	102209497	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077696, intron 3 of 26)	intron (NM_001077696, intron 3 of 26)	19298.0	NM_175935	68401.0	Mm.22385	NM_175935	ENSMUSG00000034793	G6pc3	0710001K01Rik|AU019276|AU045429|AV128920|AW545836|UGRP	glucose 6 phosphatase, catalytic, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-43282417-2	chr15	43281917	43282917	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008388, intron 1 of 12)	CpG	319.0	NM_008388	16341.0	Mm.289992	NM_008388	ENSMUSG00000022336	Eif3e	48kDa|Eif3s6|Int6|eIF3-p46|eIF3-p48	eukaryotic translation initiation factor 3, subunit E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110682557-4	chr9	110682054	110683054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	MIR|SINE|MIR	26051.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-149394014-4	chr3	149393525	149394525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	119288.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	6.0	15.0	14.5	6.0	15.0	13.0
Merged-chr18-46280737-4	chr18	46280237	46281237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172627, exon 1 of 9)	exon (NM_172627, exon 1 of 9)	113.0	NM_172627	225467.0	Mm.262096	NM_172627	ENSMUSG00000024477	Pggt1b	2010207C17Rik|2610100E13|AI451237|AI551093|BGG1|GGT1	protein geranylgeranyltransferase type I, beta subunit	protein-coding	261.0	467.0	443.0	168.5	435.5	299.5
Merged-chr15-38473499-2	chr15	38472992	38473992	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	17055.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-11716324-4	chr15	11715792	11716792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	189382.0	NM_008728	18162.0	Mm.25259	NM_008728	ENSMUSG00000022206	Npr3	ANP-C|ANPR-C|EF-2|NPR-C|lgj|stri	natriuretic peptide receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70619030-4	chr8	70618521	70619521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153074, intron 2 of 2)	intron (NM_153074, intron 2 of 2)	2177.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	105.5	263.0	210.0	77.5	277.5	201.0
Merged-chr5-30013065-8	chr5	30012569	30013569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031168)	promoter-TSS (NM_031168)	-45.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84996286-4	chr12	84995801	84996801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178363)	promoter-TSS (NM_178363)	-20.0	NM_001347421	56531.0	Mm.153183	NM_178363	ENSMUSG00000021244	Ylpm1	A930013E17Rik|ZAP|Zap3	YLP motif containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-36927261-2	chr19	36926761	36927761	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080706, intron 1 of 37)	intron (NM_001080706, intron 1 of 37)	1182.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	36.0	85.0	62.0	37.0	81.0	63.0
Merged-chr8-95852497-4	chr8	95851986	95852986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172758, intron 2 of 11)	intron (NM_172758, intron 2 of 11)	1005.0	NM_172758	234595.0	Mm.29267	NM_172758	ENSMUSG00000036534	Slc38a7	D430050E18	solute carrier family 38, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69999469-2	chr11	69998969	69999969	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291127, exon 4 of 4)	3' UTR (NM_001291127, exon 4 of 4)	-1157.0	NM_007888	13543.0	Mm.5114	NM_007888	ENSMUSG00000020888	Dvl2	-	dishevelled segment polarity protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98362257-4	chr7	98361725	98362725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168539)	promoter-TSS (NM_001168539)	-897.0	NM_001168539	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	13.5	14.0	23.0	9.0	21.5	21.0
Merged-chr6-86548118-4	chr6	86547600	86548600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037961, intron 3 of 4)	intron (NR_037961, intron 3 of 4)	20699.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	0.0	0.0	1.5	0.0	0.0	1.5
Merged-chr9-103202092-4	chr9	103201586	103202586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009275)	promoter-TSS (NM_009275)	-21.0	NM_009275	20818.0	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122924407-4	chr7	122923897	122924897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	46062.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77968963-2	chr10	77968463	77969463	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 2 of 33)	intron (NM_138301, intron 2 of 33)	909.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122635558-4	chr6	122635089	122636089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9165.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	26.0	133.0	87.5	29.0	95.0	64.0
Merged-chr10-75677044-4	chr10	75676548	75677548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172549, intron 29 of 36)	intron (NM_172549, intron 29 of 36)	-33040.0	NM_027890	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46000001-4	chr8	45999505	46000505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039562)	promoter-TSS (NM_001039562)	-155.0	NM_001039562	654824.0	Mm.334517	NM_001039562	ENSMUSG00000050914	Ankrd37	-	ankyrin repeat domain 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30414960-2	chr2	30414460	30415460	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007760, intron 1 of 13)	intron (NM_007760, intron 1 of 13)	788.0	NM_007760	12908.0	Mm.20396	NM_007760	ENSMUSG00000026853	Crat	AW107812|CARAT	carnitine acetyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20424318-4	chr16	20423791	20424791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176839, intron 1 of 6)	intron (NM_176839, intron 1 of 6)	2103.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43527685-2	chr19	43527185	43528185	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3080.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70577715-4	chr14	70577222	70578222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360475)	promoter-TSS (NM_001360475)	-102.0	NM_153136	213484.0	Mm.34191	NM_153136	ENSMUSG00000045211	Nudt18	BC036718	nudix (nucleoside diphosphate linked moiety X)-type motif 18	protein-coding	68.0	150.5	149.5	68.0	151.5	150.0
Merged-chr3-96172475-4	chr3	96172005	96173005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153053)	promoter-TSS (NM_153053)	-1.0	NM_153053	107701.0	Mm.219671	NM_153053	ENSMUSG00000068856	Sf3b4	SF3b49|SF3b50|Sap49	splicing factor 3b, subunit 4	protein-coding	3.5	48.5	13.0	7.5	9.5	21.5
Merged-chr4-144892373-4	chr4	144891886	144892886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172424)	promoter-TSS (NM_001172424)	-441.0	NM_001172424	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118670603-2	chr9	118670103	118671103	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 9 of 27)	intron (NM_133721, intron 9 of 27)	-41089.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	28.5	89.0	59.5	29.0	91.0	63.5
Merged-chr8-13214093-4	chr8	13213588	13214588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13464.0	NM_025768	66790.0	Mm.34901	NM_025768	ENSMUSG00000038515	Grtp1	5430401C05Rik|C81211|Tbc1d6	GH regulated TBC protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65502978-4	chr18	65502466	65503466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	RLTR19-int|LTR|ERVK	71969.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	78.5	222.0	155.0	175.0	487.0	318.5
Merged-chr11-113752476-4	chr11	113751981	113752981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163346)	promoter-TSS (NM_001163346)	-666.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124671684-4	chr2	124671198	124672198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	18117.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-140961969-2	chr4	140961469	140962469	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355515, intron 1 of 7)	intron (NM_001355515, intron 1 of 7)	698.0	NM_023374	67680.0	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20505655-4	chr10	20505167	20506167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 2 of 12)	intron (NM_013875, intron 2 of 12)	42661.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94688628-4	chr10	94688120	94689120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015524)	promoter-TSS (NR_015524)	-7.0	NR_015524	67723.0	Mm.116284	NR_015524		Cep83os	4932415G12Rik|Ccdc41os1	centrosomal protein 83, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80934046-4	chr18	80933550	80934550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001201569)	promoter-TSS (NM_001201569)	8.0	NM_001201569	50771.0	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding	0.5	7.5	12.0	0.0	8.5	8.5
Merged-chr15-58262263-4	chr15	58261768	58262768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47376.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113735707-4	chr5	113735216	113736216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001010825)	promoter-TSS (NM_001010825)	-66.0	NM_001010825	231630.0	Mm.21926	NM_001010825	ENSMUSG00000053334	Ficd	D5Ertd40e|Hype	FIC domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191115076-4	chr1	191114585	191115585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16671.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	83.5	212.0	170.5	100.0	223.0	187.5
Merged-chr15-81586743-2	chr15	81586243	81587243	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177821, intron 1 of 30)	CpG-5131	529.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97511530-2	chr11	97511071	97512071	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018873, exon 20 of 20)	3' UTR (NM_018873, exon 20 of 20)	-11231.0	NM_001289118	100141474.0	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	18.0	23.5	8.5	4.5	16.0	12.0
Merged-chr2-18766606-2	chr2	18766106	18767106	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5744.0	NR_126079	100041479.0	Mm.393659	NR_126079	ENSMUSG00000092353	Gm3363	-	predicted gene 3363	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111659252-4	chr8	111658776	111659776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011742, intron 2 of 3)	MERVL_2A-int|LTR|ERVL	15833.0	NM_011742	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75860254-4	chr10	75859693	75860693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010798)	promoter-TSS (NM_010798)	57.0	NM_010798	17319.0	Mm.2326	NM_010798	ENSMUSG00000033307	Mif	GIF|Glif	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100614275-4	chr5	100613771	100614771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42066.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	46.5	119.0	66.5	7.5	34.5	30.5
Merged-chr1-94582213-4	chr1	94581704	94582704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-215238.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86857381-4	chr4	86856863	86857863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009096)	promoter-TSS (NM_009096)	4.0	NM_009096	20104.0	Mm.379007	NM_009096	ENSMUSG00000028495	Rps6	S6R	ribosomal protein S6	protein-coding	46.5	174.0	127.5	30.5	77.5	54.5
Merged-chr7-127769846-4	chr7	127769350	127770350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198424)	promoter-TSS (NM_198424)	35.0	NM_198424	269999.0	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	23.0	126.5	71.0	35.0	104.5	43.5
Merged-chr8-4322648-4	chr8	4322155	4323155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010485, intron 1 of 5)	intron (NM_010485, intron 1 of 5)	2445.0	NM_010485	15568.0	Mm.119162	NM_010485	ENSMUSG00000040028	Elavl1	2410055N02Rik|HUR|Hua|W91709	ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125098050-2	chr6	125097550	125098550	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_106012)	TTS (NR_106012)	1026.0	NR_106012	102466272.0		NR_106012	ENSMUSG00000098762	Mir7045	Gm27758|mmu-mir-7045	microRNA 7045	ncRNA	0.0	0.0	1.0	0.0	0.0	0.5
Merged-chr9-21030957-4	chr9	21030484	21031484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023892)	TTS (NM_023892)	-1054.0	NM_008319	15898.0	Mm.4629	NM_008319	ENSMUSG00000032174	Icam5	CD50|ICAM-3|Icam3|TLN|Tlcn	intercellular adhesion molecule 5, telencephalin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67205367-4	chr18	67204880	67205880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024190)	promoter-TSS (NM_024190)	21.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	72.5	107.5	119.5	88.5	199.5	129.0
Merged-chr2-160250486-4	chr2	160249992	160250992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77002.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-33203958-4	chr14	33203446	33204446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-12877.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-46821514-4	chr14	46821010	46822010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022023, intron 1 of 6)	intron (NM_022023, intron 1 of 6)	732.0	NM_022023	63985.0	Mm.87312	NM_022023	ENSMUSG00000062014	Gmfb	3110001H22Rik|3110001O16Rik|AI851627|C79176|D14Ertd630e	glia maturation factor, beta	protein-coding	49.5	82.0	69.5	40.5	96.5	73.0
Merged-chr1-79848872-4	chr1	79848365	79849365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009255, intron 1 of 8)	intron (NM_009255, intron 1 of 8)	9800.0	NM_009255	20720.0	Mm.3093	NM_009255	ENSMUSG00000026249	Serpine2	B230326M24Rik|PAI-1|PI-7|PI7|PN-1|Spi4	serine (or cysteine) peptidase inhibitor, clade E, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37890504-4	chr1	37890022	37891022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026913)	promoter-TSS (NM_026913)	45.0	NM_027098	107734.0	Mm.26614	NM_027098	ENSMUSG00000026087	Mrpl30	2310001L22Rik|L30mt|MRP-L28|MRP-L30|Rpml28	mitochondrial ribosomal protein L30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5206972-4	chr17	5206466	5207466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	211801.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91355400-4	chr16	91354929	91355929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17354.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98321264-4	chr7	98320780	98321780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360615)	promoter-TSS (NM_001360615)	-72.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-41738996-4	chr5	41738512	41739512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25208.0	NM_007524	12020.0	Mm.2530	NM_007524	ENSMUSG00000049691	Nkx3-2	Bapx1|NKX3.2|Nkx-3.2	NK3 homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47508155-4	chr17	47507666	47508666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	3115.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3152205-4	chr5	3151705	3152705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-191688.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-56795452-4	chr10	56794951	56795951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	363470.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-60580243-4	chr19	60579764	60580764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172097, intron 1 of 6)	intron (NM_001172097, intron 1 of 6)	759.0	NM_001172097	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	28.0	31.0	26.5	12.0	10.5	10.0
Merged-chr8-40307434-4	chr8	40306939	40307939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030110)	promoter-TSS (NM_030110)	490.0	NR_106126	102466237.0		NR_106126	ENSMUSG00000098431	Mir7666	Gm27915|mmu-mir-7666	microRNA 7666	ncRNA	10.5	23.5	15.0	5.5	19.0	9.0
Merged-chr10-111004331-4	chr10	111003828	111004828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359624, intron 1 of 16)	MTE2a|LTR|ERVL-MaLR	5681.0	NM_001359622	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	3.0	9.5	10.0	3.5	11.0	11.0
Merged-chr11-93995901-5	chr11	93995460	93996460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199203)	promoter-TSS (NM_001199203)	-131.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	166.5	416.5	304.5	190.0	381.5	277.0
Merged-chr8-121906645-4	chr8	121906128	121907128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011404, intron 1 of 9)	intron (NM_011404, intron 1 of 9)	1058.0	NM_011404	20539.0	Mm.22374	NM_011404	ENSMUSG00000040010	Slc7a5	4F2LC|D0H16S474E|LAT1|TA1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 5	protein-coding	18.5	4.0	8.5	9.5	8.0	24.0
Merged-chr9-123717672-4	chr9	123717202	123718202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033322)	promoter-TSS (NM_033322)	-77.0	NR_151689	93730.0	Mm.378263	NM_033322	ENSMUSG00000025245	Lztfl1	5530402H04Rik|6130400H19Rik|AI414725|AW048545	leucine zipper transcription factor-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-115384888-4	chr10	115384393	115385393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033261)	promoter-TSS (NM_001033261)	-66.0	NM_001033261	216345.0	Mm.207621	NM_001033261	ENSMUSG00000034163	Zfc3h1	BC033596|Ccdc131|Psrc2	zinc finger, C3H1-type containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-39190832-4	chr2	39190319	39191319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178778)	promoter-TSS (NM_178778)	-89.0	NM_178778	320271.0	Mm.204836	NM_178778	ENSMUSG00000035236	Scai	9330112M16|A930041I02Rik|AI662729	suppressor of cancer cell invasion	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-25241822-4	chr18	25241311	25242311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033532, intron 5 of 10)	intron (NM_001033532, intron 5 of 10)	72791.0	NM_001033532	225289.0	Mm.391081	NM_001033532	ENSMUSG00000033632	AW554918	4921538P22|AI461742|Kiaa1328|mKIAA1328	expressed sequence AW554918	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-16006442-4	chr3	16005952	16006952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081687)	promoter-TSS (NM_001081687)	-120.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141539886-4	chr7	141539378	141540378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142681)	promoter-TSS (NM_001142681)	-21.0	NM_001142681	68038.0	Mm.245355	NM_026522	ENSMUSG00000025512	Chid1	3110023E09Rik|AI841869	chitinase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-14131780-2	chr10	14131280	14132280	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010437, exon 4 of 9)	exon (NM_010437, exon 4 of 9)	165401.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-108833653-4	chr4	108833139	108834139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027453)	promoter-TSS (NM_027453)	1.0	NM_027453	70533.0	Mm.379178	NM_027453	ENSMUSG00000028568	Btf3l4	4632412E09Rik|5730434I03Rik|AI316863|AU022207|AW552446	basic transcription factor 3-like 4	protein-coding	47.5	160.5	133.0	49.0	168.0	125.5
Merged-chr1-23184888-4	chr1	23184331	23185331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82578.0	NM_025746	66755.0	Mm.431297	NM_025746	ENSMUSG00000073730	4933415F23Rik	-	RIKEN cDNA 4933415F23 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105291094-4	chr8	105290601	105291601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357379, intron 8 of 12)	intron (NM_001357379, intron 8 of 12)	-1573.0	NM_028888	74356.0	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80827876-2	chr10	80827376	80828376	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035503)	promoter-TSS (NR_035503)	-921.0	NR_035503	100316778.0		NR_035503	ENSMUSG00000087993	Mir1982	mir-1982|mmu-mir-1982	microRNA 1982	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-24961751-4	chr19	24961243	24962243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033744)	promoter-TSS (NR_033744)	-127.0	NM_146097	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	48.5	96.5	81.5	36.5	101.0	67.5
Merged-chr6-34907978-4	chr6	34907472	34908472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013366, intron 3 of 14)	intron (NM_001013366, intron 3 of 14)	2859.0	NM_001013366	101240.0	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96300843-4	chr3	96300307	96301307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6838.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	1.5	1.0	0.0	1.5	1.0	0.0
Merged-chr12-110889812-4	chr12	110889300	110890300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027223)	promoter-TSS (NM_027223)	536.0	NM_001081057	104859.0	Mm.35583	NM_175336	ENSMUSG00000021275	Tecpr2	4930573I19Rik|AI604920|mKIAA0297	tectonin beta-propeller repeat containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3967734-4	chr4	3967237	3968237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28313.0	NR_104356	66433.0	Mm.27406	NM_181391	ENSMUSG00000042198	Chchd7	1810049H20Rik	coiled-coil-helix-coiled-coil-helix domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70764448-4	chr11	70763919	70764919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177565)	promoter-TSS (NM_177565)	-28.0	NM_177565	193043.0	Mm.40966	NM_177565	ENSMUSG00000043602	Zfp3	AI854635|B230309J24|Fnp-1|Zfp-3	zinc finger protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87636019-4	chr16	87635529	87636529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62925.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	45.5	64.0	69.5	41.5	58.0	72.5
Merged-chr8-71460849-1	chr8	71460349	71461349	+	1000.0	f1_balb.idr	intron (NM_022419, intron 2 of 4)	intron (NM_022419, intron 2 of 4)	2808.0	NM_022419	64296.0	Mm.276383	NM_022419	ENSMUSG00000007950	Abhd8	0910001L24Rik|AB030191	abhydrolase domain containing 8	protein-coding	0.0	4.5	0.5	0.0	0.0	5.5
Merged-chr6-87483445-2	chr6	87482945	87483945	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 4 of 10)	intron (NM_001037727, intron 4 of 10)	12882.0	NR_104483	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.0	5.0	1.5	0.0	3.5	1.5
Merged-chr3-87408370-4	chr3	87407861	87408861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27421.0	NM_001113238	329693.0	Mm.331122	NM_183222	ENSMUSG00000048031	Fcrl5	Fcrh3|mBXMH2	Fc receptor-like 5	protein-coding	12.0	42.0	36.0	19.5	12.0	6.5
Merged-chr16-30948423-4	chr16	30947892	30948892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	133040.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	22.5	75.5	27.5	48.5	91.5	51.5
Merged-chr5-113016218-4	chr5	113015716	113016716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177078)	promoter-TSS (NM_177078)	-678.0	NM_177078	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	18.0	42.5	22.5	4.5	49.0	26.0
Merged-chr5-34170931-4	chr5	34170409	34171409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1383.0	NM_001289803	272158.0	Mm.319286	NM_181857	ENSMUSG00000045102	Poln	POL4P	DNA polymerase N	protein-coding	17.5	35.5	24.5	8.5	31.5	20.5
Merged-chr15-78963069-2	chr15	78962569	78963569	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039156, intron 7 of 24)	intron (NM_001039156, intron 7 of 24)	15345.0	NM_001039155	110253.0	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-73623273-4	chr18	73622786	73623786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	50581.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73422989-8	chr15	73422501	73423501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358046, intron 1 of 34)	CpG	190.0	NM_007982	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32960467-4	chr2	32959979	32960979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199302, intron 1 of 24)	MIRb|SINE|MIR	776.0	NM_199302	227738.0	Mm.248037	NM_199302	ENSMUSG00000026792	Lrsam1	-	leucine rich repeat and sterile alpha motif containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-34297166-4	chr14	34296654	34297654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153399, intron 2 of 11)	intron (NR_153399, intron 2 of 11)	13363.0	NR_153399	75698.0	Mm.45406	NM_029389	ENSMUSG00000041471	Fam35a	3110001K24Rik	family with sequence similarity 35, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-60636332-4	chr14	60635837	60636837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033272, intron 1 of 12)	intron (NM_001033272, intron 1 of 12)	1632.0	NM_001033272	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	5.5	2.5	4.0	4.5	6.0	6.0
Merged-chr13-94098542-4	chr13	94098058	94099058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 1 of 3)	intron (NM_172589, intron 1 of 3)	40762.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57389839-4	chr16	57389331	57390331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	36554.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98567824-4	chr15	98567320	98568320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009833)	promoter-TSS (NM_009833)	-184.0	NM_009833	12455.0	Mm.29941	NM_009833	ENSMUSG00000011960	Ccnt1	2810478G24Rik|AI115585|CycT1	cyclin T1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23762584-7	chr13	23762070	23763070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013550)	promoter-TSS (NM_013550)	-184.0	NM_013550	360198.0	Mm.221301	NM_013550	ENSMUSG00000069265	Hist1h3a	-	histone cluster 1, H3a	protein-coding	118.5	263.0	162.5	32.0	120.5	87.0
Merged-chr4-62286503-4	chr4	62286007	62287007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025286)	promoter-TSS (NM_025286)	78.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12436328-4	chr19	12435853	12436853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	8448.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	106.0	251.0	204.5	90.0	217.0	216.5
Merged-chr17-64622481-4	chr17	64621960	64622960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	20811.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-54529541-4	chr8	54529035	54530035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029701, intron 1 of 4)	CpG	463.0	NM_029701	76687.0	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik|SPC22/23	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109565757-4	chr8	109565253	109566253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175646)	promoter-TSS (NM_175646)	108.0	NR_151644	64340.0	Mm.23705	NM_178380	ENSMUSG00000037993	Dhx38	5730550P09Rik|AI325984|AW540902|Ddx38|KIAA0224|Prp16	DEAH (Asp-Glu-Ala-His) box polypeptide 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-151195526-4	chr5	151195045	151196045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5352.0	NR_153382	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51605332-2	chr11	51604832	51605832	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048061, intron 3 of 7)	intron (NM_001048061, intron 3 of 7)	1549.0	NM_001048061	15384.0	Mm.256875	NM_010448	ENSMUSG00000020358	Hnrnpab	3010025C11Rik|CBF-A|Cgbfa|Hnrpab	heterogeneous nuclear ribonucleoprotein A/B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60707879-4	chr11	60707375	60708375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008502, intron 11 of 20)	intron (NM_008502, intron 11 of 20)	8185.0	NM_008502	16897.0	Mm.285453	NM_008502	ENSMUSG00000020536	Llgl1	AI325176|Lgl1|Llglh|Mgl1	LLGL1 scribble cell polarity complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-14703153-3	chr14	14702656	14703656	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001360516, exon 1 of 25)	5' UTR (NM_001360516, exon 1 of 25)	131.0	NM_001360509	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	0.0	13.0	6.0	0.0	13.0	6.5
Merged-chr4-132211669-4	chr4	132211167	132212167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145393, intron 1 of 4)	CpG-10406	589.0	NM_145393	213541.0	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH domain family 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32122560-4	chr5	32122048	32123048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13924.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	2.5	2.5	2.0	5.0	8.5	3.0
Merged-chr19-8756974-4	chr19	8756455	8757455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276704)	promoter-TSS (NM_001276704)	14.0	NR_132423	102640359.0	Mm.440831	NR_132423		1700023D09Rik	AV208457	RIKEN cDNA 1700023D09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-3337588-8	chr18	3337111	3338111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110852)	promoter-TSS (NM_001110852)	-22.0	NM_001110852	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12770131-3	chr17	12769621	12770621	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010515)	promoter-TSS (NM_010515)	-415.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123014159-4	chr4	123013660	123014660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2433.0	NM_025873	66966.0	Mm.235030	NM_025873	ENSMUSG00000028653	Trit1	2310075G14Rik|AI314189|AI314635|AV099619|IPPT|IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-13394234-4	chr13	13393731	13394731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031999)	promoter-TSS (NM_031999)	-607.0	NM_031999	83924.0	Mm.379269	NM_031999	ENSMUSG00000021306	Gpr137b	AI788917|AU016435|AW546472|C730041E01|C80550|C80741|D13Abb1e|Tm7sf1	G protein-coupled receptor 137B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84685680-4	chr18	84685194	84686194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023149)	promoter-TSS (NM_023149)	8.0	NM_023149	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28408483-2	chr17	28407983	28408983	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 8 of 10)	intron (NM_010220, intron 8 of 10)	-43267.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49049442-4	chr16	49048924	49049924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8062.0	NM_001166210	667772.0	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37157159-4	chr19	37156660	37157660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198300, intron 2 of 10)	intron (NM_198300, intron 2 of 10)	-16683.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36971241-2	chr17	36970741	36971741	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9996.0	NM_029747	76797.0	Mm.159787	NM_029747	ENSMUSG00000064308	2410137M14Rik	-	RIKEN cDNA 2410137M14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24034282-4	chr5	24033787	24034787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3597.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	109.5	195.5	149.0	62.5	163.0	119.0
Merged-chr11-114723341-4	chr11	114722842	114723842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4070.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83433812-2	chr6	83433312	83434312	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347313, intron 3 of 11)	intron (NM_001347313, intron 3 of 11)	7866.0	NM_183138	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114915226-4	chr11	114914720	114915720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19166.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-6155186-2	chr7	6154692	6155692	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001013012, intron 1 of 2)	CpG	779.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-11925866-4	chr6	11925364	11926364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029404)	promoter-TSS (NM_029404)	-17.0	NM_001362122	75725.0	Mm.212411	NM_029404	ENSMUSG00000029629	Phf14	1110001C23Rik|4932409F11Rik|5730446A07Rik|AA623952|AV297001|mKIAA0783	PHD finger protein 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21822945-4	chr14	21822455	21823455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8606.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	0.5	7.0	8.5	0.0	9.5	13.0
Merged-chr6-72899969-4	chr6	72899502	72900502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347231)	promoter-TSS (NM_001347231)	-23.0	NM_019715	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	1.0	15.0	9.5	0.0	15.5	9.5
Merged-chr7-25133250-4	chr7	25132761	25133761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163555)	promoter-TSS (NM_001163555)	-801.0	NM_001163554	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-84884927-4	chr4	84884398	84885398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175275, intron 1 of 25)	CpG	589.0	NM_177385	338349.0	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34853943-2	chr1	34853443	34854443	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357425, intron 2 of 8)	intron (NM_001357425, intron 2 of 8)	3954.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139791930-3	chr5	139791421	139792421	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010757, intron 1 of 2)	CpG	385.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	0.0	2.5	2.5	0.0	2.5	1.5
Merged-chr19-12439753-4	chr19	12439242	12440242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	11837.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	101.0	242.5	168.0	79.0	268.5	212.5
Merged-chr12-32642676-4	chr12	32642160	32643160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-177675.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	2.5	1.0	2.5	3.5	11.5	4.0
Merged-chr8-90908305-4	chr8	90907811	90908811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	CpG	-23938.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93849913-4	chr2	93849423	93850423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290782)	promoter-TSS (NM_001290782)	20.0	NM_001290782	329470.0	Mm.486910	NM_183220	ENSMUSG00000040272	Accs	2610203E10Rik|Phacs	1-aminocyclopropane-1-carboxylate synthase (non-functional)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65956061-4	chr5	65955660	65956660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10964.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20661168-4	chr14	20660664	20661664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001310431, exon 4 of 4)	exon (NM_001310431, exon 4 of 4)	3410.0	NM_001310432	68760.0	Mm.35789	NM_175132	ENSMUSG00000039376	Synpo2l	1110054M18Rik|Chap	synaptopodin 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86484488-4	chr11	86483955	86484955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029788)	promoter-TSS (NM_029788)	-202.0	NM_029788	76892.0	Mm.262707	NM_029788	ENSMUSG00000020521	Rnft1	0610013E23Rik|AV007605	ring finger protein, transmembrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143056122-4	chr7	143055629	143056629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133655, intron 1 of 7)	intron (NM_133655, intron 1 of 7)	-2443.0	NR_110354	97423.0	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	9.0	24.5	17.0	10.0	28.0	17.0
Merged-chr16-16983902-4	chr16	16983401	16984401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038663, intron 1 of 7)	CpG	519.0	NM_001038663	26413.0	Mm.196581	NM_011949	ENSMUSG00000063358	Mapk1	9030612K14Rik|AA407128|AU018647|C78273|ERK|Erk2|MAPK2|PRKM2|Prkm1|p41mapk|p42mapk	mitogen-activated protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34157108-4	chr17	34156606	34157606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010387, intron 2 of 5)	intron (NM_010387, intron 2 of 5)	3915.0	NM_010387	14999.0	Mm.460938	NM_010387	ENSMUSG00000079547	H2-DMb1	AI385589|H-2Mb1|H2-Mb1	histocompatibility 2, class II, locus Mb1	protein-coding	0.5	25.0	6.0	2.5	18.0	5.0
Merged-chr3-144039649-4	chr3	144039098	144040098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	162734.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-133550642-4	chr2	133550131	133551131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1528.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26242216-4	chr17	26241720	26242720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	2022.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	12.0	23.0	42.5	8.5	58.0	10.0
Merged-chr17-32966883-2	chr17	32966383	32967383	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153063, intron 1 of 3)	RMER21A|LTR|ERV1	1052.0	NM_153063	224691.0	Mm.328953	NM_153063	ENSMUSG00000053600	Zfp472	KRIM-1|Krim-1A|Krim-1B|Krim1	zinc finger protein 472	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82022845-4	chr11	82022322	82023322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12755.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-83853985-4	chr18	83853486	83854486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	232576.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-89741221-4	chr10	89740722	89741722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3769.0	NM_029166	75089.0	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	12.5	24.0	5.5	4.0	11.5	10.5
Merged-chr9-95512031-4	chr9	95511539	95512539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001114977)	promoter-TSS (NM_001114977)	-43.0	NM_001357974	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	228.5	562.5	374.5	167.5	462.0	364.5
Merged-chr12-99902681-4	chr12	99902147	99903147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028354, intron 6 of 15)	intron (NM_028354, intron 6 of 15)	18132.0	NM_028354	104884.0	Mm.312323	NM_028354	ENSMUSG00000021177	Tdp1	2810481F14Rik|4921509N21Rik|AI838772|AW493413|E430034L06Rik|MLZ-501|SCAN1	tyrosyl-DNA phosphodiesterase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101827116-4	chr5	101826604	101827604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61974.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-62576106-4	chr17	62575617	62576617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	305200.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39232871-4	chr6	39232374	39233374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26101.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-102700986-4	chr13	102700487	102701487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360519, intron 1 of 2)	intron (NM_001360519, intron 1 of 2)	7429.0	NM_008533	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	12.0	21.0	28.5	12.0	21.0	29.5
Merged-chr7-25686935-4	chr7	25686505	25687505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011577)	promoter-TSS (NM_011577)	3.0	NM_011577	21803.0	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-7430486-4	chr17	7429983	7430983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45178.0	NM_001142539	667055.0	Mm.327371	NM_001142539	ENSMUSG00000056133	Gm9992	-	predicted gene 9992	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-63138104-2	chr11	63137604	63138604	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302255, intron 3 of 4)	intron (NM_001302255, intron 3 of 4)	5301.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135920659-4	chr4	135920173	135921173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024243)	promoter-TSS (NM_024243)	-53.0	NM_024243	71665.0	Mm.439940	NM_024243	ENSMUSG00000028673	Fuca1	0610006A03Rik|9530055J05Rik|Afuc|Fuca	fucosidase, alpha-L- 1, tissue	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111725527-4	chr13	111725057	111726057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	39379.0	NM_172593	218613.0	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	18.5	39.0	20.5	25.0	28.0	21.5
Merged-chr17-26237939-4	chr17	26237459	26238459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	6283.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	9.5	13.5	15.0	18.0	11.5	9.0
Merged-chr6-33059769-1	chr6	33059269	33060269	+	1000.0	f1_c57bl6.idr	intron (NM_001355667, intron 1 of 8)	intron (NM_001355667, intron 1 of 8)	491.0	NM_001355667	66075.0	Mm.21501	NM_025336	ENSMUSG00000053768	Chchd3	0610041L09Rik|1700039J09Rik|AW558177	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding	0.0	5.5	4.0	1.0	5.5	2.0
Merged-chr4-105703289-2	chr4	105702789	105703789	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-537924.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91250222-4	chr1	91249713	91250713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355761)	promoter-TSS (NM_001355761)	-91.0	NM_001355763	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	5.5	5.5	6.5	2.0	6.0	7.5
Merged-chr9-57521666-3	chr9	57521177	57522177	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007747, intron 1 of 4)	CpG	445.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74338698-4	chr17	74338162	74339162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162870)	promoter-TSS (NM_001162870)	-325.0	NM_001357738	50850.0	Mm.19804	NM_016962	ENSMUSG00000024068	Spast	Spg4|mKIAA1083	spastin	protein-coding	22.0	52.5	68.5	15.5	29.5	41.0
Merged-chr10-113506285-2	chr10	113505785	113506785	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-577259.0	NM_001033474	382423.0	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132	ataxin 7-like 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6501045-4	chr15	6500570	6501570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55737.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34867432-4	chr1	34866949	34867949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145516, intron 6 of 7)	intron (NM_145516, intron 6 of 7)	17460.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-52004242-4	chr14	52003725	52004725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198249, intron 21 of 23)	intron (NM_198249, intron 21 of 23)	10333.0	NM_001253695	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	2.0	0.0	12.5	2.5	4.0	0.5
Merged-chr12-32822739-2	chr12	32822239	32823239	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021524, intron 1 of 10)	intron (NM_021524, intron 1 of 10)	-1377.0	NR_045032	100504486.0	Mm.440246	NR_045032		Gdap10	Gdap-ps	ganglioside-induced differentiation-associated-protein 10	ncRNA	86.0	243.5	189.5	127.5	238.0	175.0
Merged-chr1-148920530-1	chr1	148920030	148921030	+	1000.0	f0_balb.idr	Intergenic	Intergenic	1001909.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71294202-4	chr8	71293685	71294685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	21471.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	37.5	173.0	96.0	61.0	124.0	97.5
Merged-chr4-141872247-4	chr4	141871738	141872738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	2682.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	140.0	456.0	313.0	155.5	390.0	252.0
Merged-chr1-52765405-4	chr1	52764911	52765911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38053.0	NM_001357464	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	18.0	67.5	40.5	43.5	64.5	71.0
Merged-chr3-116424028-4	chr3	116423565	116424565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080818)	promoter-TSS (NM_001080818)	-33.0	NM_001173553	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69672502-4	chr11	69672011	69673011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144958)	promoter-TSS (NM_144958)	-88.0	NM_001159375	13681.0	Mm.26680	NM_144958	ENSMUSG00000059796	Eif4a1	BM-010|Ddx2a|Eif4	eukaryotic translation initiation factor 4A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30323158-4	chr7	30322660	30323660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033140)	promoter-TSS (NM_001033140)	-785.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	128.0	342.0	249.0	311.0	653.0	436.0
Merged-chr9-105073190-1	chr9	105072690	105073690	+	1000.0	f0_balb.idr	intron (NM_053159, intron 7 of 9)	L1MC4|LINE|L1	19922.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	2.5	11.0	10.5	11.5	0.5	10.5
Merged-chr12-91592316-4	chr12	91591803	91592803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1816.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115901257-4	chr6	115900741	115901741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167763, intron 15 of 28)	intron (NM_001167763, intron 15 of 28)	-30686.0	NM_145383	212541.0	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68691318-1	chr11	68690818	68691818	+	1000.0	f0_balb.idr	promoter-TSS (NM_175260)	promoter-TSS (NM_175260)	-597.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-53703212-4	chr9	53702721	53703721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175562, intron 1 of 1)	PB1D10|SINE|Alu	3011.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74920838-4	chr15	74920353	74921353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34198.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	4.5	25.5	7.0	1.0	23.5	5.0
Merged-chr3-122498098-3	chr3	122497579	122498579	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355264, intron 1 of 9)	intron (NM_001355264, intron 1 of 9)	14510.0	NM_001355264	29815.0	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87521380-4	chr3	87520875	87521875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4203.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	51.0	93.0	114.5	73.5	175.5	115.5
Merged-chr2-31142016-4	chr2	31141522	31142522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177649)	promoter-TSS (NM_001177649)	-14.0	NM_001038700	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115375525-4	chr6	115375009	115376009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 1 of 7)	intron (NM_001308354, intron 1 of 7)	13160.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120512069-4	chr5	120511580	120512580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 1 of 13)	intron (NM_001177595, intron 1 of 13)	888.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137818547-4	chr4	137818045	137819045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-22161.0	NM_007431	11647.0	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	7.0	20.0	25.0	6.5	15.5	31.5
Merged-chr14-32201944-4	chr14	32201436	32202436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016897)	promoter-TSS (NM_016897)	-35.0	NM_001359915	26430.0	Mm.15962	NM_011960	ENSMUSG00000021911	Parg	AI413217	poly (ADP-ribose) glycohydrolase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-56832112-4	chr6	56831601	56832601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012056)	promoter-TSS (NM_012056)	42.0	NM_012056	27055.0	Mm.20943	NM_012056	ENSMUSG00000029781	Fkbp9	1810014L23|AW549641|FKBP-63|FKBP-9|FKBP60|FKBP63|FKBP65RS	FK506 binding protein 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36530795-4	chr16	36530273	36531273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013803, intron 1 of 6)	intron (NM_013803, intron 1 of 6)	31361.0	NM_013803	12374.0	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75166685-2	chr11	75166185	75167185	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001098203, exon 2 of 2)	exon (NM_001098203, exon 2 of 2)	1467.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0.0	0.0	0.0	1.5	2.5	0.0
Merged-chr8-26979676-2	chr8	26979176	26980176	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001101502, exon 2 of 2)	exon (NM_001101502, exon 2 of 2)	2340.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135943510-2	chr4	135943010	135944010	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2938.0	NM_008254	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43673231-2	chr7	43672731	43673731	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145582, intron 1 of 2)	intron (NM_145582, intron 1 of 2)	1200.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128459111-4	chr10	128458710	128459710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001114096)	promoter-TSS (NM_001114096)	-26.0	NM_001114096	68094.0	Mm.417338	NM_198160	ENSMUSG00000025369	Smarcc2	5930405J04Rik	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35251504-2	chr17	35251004	35252004	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_106169)	TTS (NR_106169)	215.0	NR_106169	102465886.0		NR_106169	ENSMUSG00000098269	Mir8094	Gm27513|mmu-mir-8094	microRNA 8094	ncRNA	0.0	5.0	1.0	0.0	0.5	0.0
Merged-chr8-4274895-2	chr8	4274395	4275395	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011592, intron 1 of 12)	7SK|RNA|RNA	1010.0	NM_011592	21856.0	Mm.195249	NM_011592	ENSMUSG00000002949	Timm44	0710005E20Rik|D8Ertd118e|Mimt44|Tim44	translocase of inner mitochondrial membrane 44	protein-coding	13.0	19.5	12.5	7.0	21.0	7.5
Merged-chr11-119875876-4	chr11	119875381	119876381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028898, intron 24 of 33)	intron (NM_028898, intron 24 of 33)	-6408.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-113722189-4	chr7	113721697	113722697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-43801.0	NM_145584	233744.0	Mm.334160	NM_145584	ENSMUSG00000038156	Spon1	AI666765|AW455831|BC020531|D330035F22Rik|FSP	spondin 1, (f-spondin) extracellular matrix protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35210427-4	chr9	35209925	35210925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026130)	promoter-TSS (NM_026130)	630.0	NM_172291	235169.0	Mm.138512	NM_172291	ENSMUSG00000039048	Foxred1	BC024806|TEG-23|Tex23	FAD-dependent oxidoreductase domain containing 1	protein-coding	0.0	8.0	6.5	5.0	6.0	3.5
Merged-chr13-63431726-4	chr13	63431214	63432214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042673)	promoter-TSS (NM_001042673)	31.0	NM_001347515	14088.0	Mm.126106	NM_007985	ENSMUSG00000021461	Fancc	Facc	Fanconi anemia, complementation group C	protein-coding	58.0	138.0	100.5	66.0	123.0	96.0
Merged-chr6-17636959-4	chr6	17636453	17637453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007604)	promoter-TSS (NM_007604)	-57.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	7.5	18.5	13.5	7.5	7.5	11.0
Merged-chr8-122431732-4	chr8	122431236	122432236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301284, intron 1 of 4)	intron (NM_001301284, intron 1 of 4)	1204.0	NM_001301284	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-70097038-4	chr10	70096520	70097520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111121)	promoter-TSS (NM_001111121)	-101.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13672531-6	chr16	13672020	13673020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177552, intron 1 of 5)	intron (NM_001177552, intron 1 of 5)	662.0	NM_025653	67118.0	Mm.223689	NM_025653	ENSMUSG00000022684	Bfar	3010001A07Rik|3110001I22Rik|AI666707|AW107665|Bar|Rnf47	bifunctional apoptosis regulator	protein-coding	2.0	21.5	17.0	6.0	10.0	14.5
Merged-chr2-153299154-4	chr2	153298676	153299676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008444, intron 1 of 8)	MIRb|SINE|MIR	7760.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134792685-4	chr6	134792161	134793161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001048054)	promoter-TSS (NM_001048054)	-33.0	NM_001048054	70686.0	Mm.491182	NM_130447	ENSMUSG00000030203	Dusp16	3830417M17Rik|AW558566|D6Ertd213e|MKP-7|MKP7|Mkpm	dual specificity phosphatase 16	protein-coding	107.0	232.0	172.0	118.0	208.5	194.5
Merged-chr7-66109385-4	chr7	66108891	66109891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081163)	promoter-TSS (NM_001081163)	-124.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43575511-2	chr17	43575011	43576011	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	7060.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	5.5	0.0	2.5	5.5	0.0	2.5
Merged-chr6-28423534-4	chr6	28423033	28424033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007480)	promoter-TSS (NM_007480)	-71.0	NM_007480	11844.0	Mm.389075	NM_007480	ENSMUSG00000020440	Arf5	-	ADP-ribosylation factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40647693-4	chr19	40647171	40648171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	T-rich|Low_complexity|Low_complexity	-12099.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	44.0	141.5	82.5	68.0	161.0	133.5
Merged-chr4-119845828-2	chr4	119845328	119846328	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	ORR1D2|LTR|ERVL-MaLR	31150.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78835464-4	chr17	78834965	78835965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081179)	promoter-TSS (NM_001081179)	-51.0	NM_181649	53951.0	Mm.220253	NM_181649	ENSMUSG00000050668	Gpatch11	2310002B06Rik|C80922|Ccdc75|L26697	G patch domain containing 11	protein-coding	8.0	10.5	21.0	7.5	29.5	23.0
Merged-chr11-79119020-4	chr11	79118506	79119506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	27467.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-84179576-4	chr11	84179060	84180060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12084.0	NM_001037932	628813.0	Mm.390389	NM_001037932	ENSMUSG00000051452	Gm11437	AI463690	predicted gene 11437	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22302846-2	chr16	22302346	22303346	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7858.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21095059-2	chr11	21094559	21095559	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023324, intron 1 of 6)	intron (NM_023324, intron 1 of 6)	3735.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-107646137-4	chr5	107645634	107646634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359917, intron 11 of 12)	B1_Mur1|SINE|Alu	-12284.0	NR_046195	78443.0	Mm.490703	NR_046195	ENSMUSG00000085900	A930041C12Rik	-	RIKEN cDNA A930041C12 gene	ncRNA	25.5	44.5	49.0	29.5	51.5	67.0
Merged-chr11-62576698-4	chr11	62576190	62577190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011706, intron 2 of 15)	intron (NM_011706, intron 2 of 15)	2204.0	NM_011706	22368.0	Mm.288064	NM_011706	ENSMUSG00000018507	Trpv2	GRC|OTRPC2|VRL-1|Vrl1	transient receptor potential cation channel, subfamily V, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112131334-4	chr13	112130764	112131764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157187.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50522657-3	chr17	50522136	50523136	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	13089.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	16.0	0.0	1.0	3.0	4.5	2.0
Merged-chr4-63365822-2	chr4	63365322	63366322	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011016)	TTS (NM_011016)	3373.0	NM_011016	18406.0	Mm.14173	NM_011016	ENSMUSG00000061540	Orm2	Agp1|Orm-2	orosomucoid 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-25026045-2	chr16	25025545	25026545	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-33594.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95892100-4	chr13	95891569	95892569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027711)	promoter-TSS (NM_027711)	-147.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	55.0	123.0	95.5	78.5	84.5	69.0
Merged-chr8-117053177-2	chr8	117052677	117053677	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 14 of 42)	B1F|SINE|Alu	29272.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-48513468-4	chr13	48512956	48513956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164575)	promoter-TSS (NM_001164575)	-20.0	NM_001164576	67911.0	Mm.251375	NM_026450	ENSMUSG00000050954	Zfp169	1700025J14Rik|4930429A13Rik|BE688704	zinc finger protein 169	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126929695-4	chr8	126929200	126930200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_024214)	TTS (NM_024214)	16221.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17222373-4	chr16	17221869	17222869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-11218.0	NM_178922	58180.0	Mm.261602	NM_178922	ENSMUSG00000050240	Hic2	AA409108|HRG22|mKIAA1020	hypermethylated in cancer 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54697258-1	chr12	54696758	54697758	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-1364.0	NM_025456	66266.0	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding	2.0	18.0	6.5	2.0	18.0	5.5
Merged-chr11-69758263-2	chr11	69757753	69758753	+	1000.0	f0_balb.idr|f0_c57.idr	5' UTR (NM_001291068, exon 1 of 29)	5' UTR (NM_001291068, exon 1 of 29)	380.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	5.0	9.5	15.5	3.0	24.0	9.5
Merged-chr2-79257124-4	chr2	79256638	79257638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010576, intron 2 of 27)	intron (NM_010576, intron 2 of 27)	1712.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58928484-4	chr11	58927994	58928994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10412.0	NM_022423	108660.0	Mm.249986	NM_022423	ENSMUSG00000020496	Rnf187	2410016F01Rik|AB030190|RACO-1	ring finger protein 187	protein-coding	164.0	513.5	304.0	183.0	344.5	233.5
Merged-chr6-86849374-4	chr6	86848880	86849880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028298)	promoter-TSS (NR_028298)	60.0	NR_028298	67170.0	Mm.119489	NR_028298	ENSMUSG00000100164	2610306M01Rik	-	RIKEN cDNA 2610306M01 gene	ncRNA	25.0	41.0	66.0	23.5	59.5	57.5
Merged-chr12-25165853-4	chr12	25165373	25166373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36699.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	8.0	0.0	12.0	4.5	7.5	3.5
Merged-chr8-60993089-5	chr8	60992576	60993576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293637)	promoter-TSS (NM_001293637)	-117.0	NM_001293637	18004.0	Mm.486881	NM_175089	ENSMUSG00000031644	Nek1	D8Ertd790e|kat	NIMA (never in mitosis gene a)-related expressed kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75685612-4	chr2	75685098	75686098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010902, intron 1 of 4)	intron (NM_010902, intron 1 of 4)	19065.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	4.0	17.5	2.0	2.0	6.5	4.5
Merged-chr11-70489839-4	chr11	70489320	70490320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15454.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-90227670-4	chr11	90227153	90228153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21823.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47651617-4	chr9	47651126	47652126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	121274.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	96.0	276.5	188.5	111.5	209.5	228.0
Merged-chr2-129602068-4	chr2	129601560	129602560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	6598.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	22.0	52.5	56.0	20.5	44.0	48.5
Merged-chr16-4586790-4	chr16	4586285	4587285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7928.0	NM_031184	83396.0	Mm.134072	NM_031184	ENSMUSG00000014303	Glis2	Gli5|Klf16|Nkl	GLIS family zinc finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118146552-4	chr11	118146037	118147037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17318.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123462000-4	chr9	123461509	123462509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001348167, exon 21 of 21)	3' UTR (NM_001348167, exon 21 of 21)	-16692.0	NM_013860	29806.0	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145720335-4	chr2	145719835	145720835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 2 of 3)	intron (NR_033220, intron 2 of 3)	19140.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53196175-4	chr4	53195695	53196695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36300.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25106006-4	chr7	25105502	25106502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163556, intron 5 of 13)	intron (NM_001163556, intron 5 of 13)	-8827.0	NR_105855	102465968.0		NR_105855	ENSMUSG00000098441	Mir6537	Gm27808|mmu-mir-6537	microRNA 6537	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-46546668-4	chr7	46546189	46547189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013789, intron 9 of 10)	MTE2a|LTR|ERVL-MaLR	93118.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32820996-6	chr12	32820433	32821433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021524, intron 1 of 10)	CpG	598.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	100.5	184.5	150.5	84.0	195.0	183.5
Merged-chr5-53378808-4	chr5	53378310	53379310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111704.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27984098-4	chr3	27983589	27984589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008875)	promoter-TSS (NM_008875)	-82.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9897821-2	chr19	9897279	9898279	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016692, intron 1 of 17)	intron (NM_016692, intron 1 of 17)	1754.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.0	6.0	3.0	2.5	9.0	8.0
Merged-chr3-122292664-2	chr3	122292164	122293164	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_030439)	TTS (NR_030439)	1039.0	NR_030439	791077.0		NR_030439	ENSMUSG00000076456	Mir760	Mirn760|mir-760|mmu-mir-760	microRNA 760	ncRNA	8.5	5.5	10.0	5.5	8.5	4.5
Merged-chr5-103753564-4	chr5	103753057	103754057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133919)	promoter-TSS (NM_133919)	-605.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33919596-4	chr17	33919122	33920122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_020625)	TTS (NM_020625)	144.0	NM_009318	21356.0	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	24.5	23.0	23.5	2.5	47.5	34.5
Merged-chr13-113418319-4	chr13	113417819	113418819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84525.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-81342463-4	chr8	81341956	81342956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001297591)	promoter-TSS (NM_001297591)	-106.0	NM_001024617	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	2.5	0.5	5.5	13.0	28.0	21.0
Merged-chr8-117479919-2	chr8	117479419	117480419	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-18356.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84893903-4	chr8	84893383	84894383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008097)	promoter-TSS (NM_008097)	38.0	NM_001044744	270076.0	Mm.2475	NM_008097	ENSMUSG00000003809	Gcdh	9030411L18|AI266902|D17825|GCD	glutaryl-Coenzyme A dehydrogenase	protein-coding	3.5	5.0	0.0	7.5	3.0	6.5
Merged-chr12-112829556-4	chr12	112829043	112830043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359292)	promoter-TSS (NM_001359292)	-22.0	NM_001359234	71963.0	Mm.313185	NM_028023	ENSMUSG00000047832	Cdca4	2410018C03Rik|HEPP|SEI-3	cell division cycle associated 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-12009372-4	chr4	12008869	12009869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42795.0	NR_040577	100503636.0	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-59071607-4	chr19	59071096	59072096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 1 of 16)	intron (NM_001114312, intron 1 of 16)	4473.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107402384-4	chr11	107401892	107402892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	68328.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54952736-4	chr6	54952232	54953232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172729, intron 1 of 11)	intron (NM_172729, intron 1 of 11)	18929.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-17803611-4	chr13	17803101	17804101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081058, exon 1 of 14)	exon (NM_001081058, exon 1 of 14)	1496.0	NM_001081058	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95833510-6	chr16	95833011	95834011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040485, intron 3 of 3)	intron (NR_040485, intron 3 of 3)	65202.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-157048321-4	chr1	157047796	157048796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60354.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	63.5	143.0	111.0	52.5	148.5	125.0
Merged-chr10-20770676-4	chr10	20770174	20771174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVL-E-int|LTR|ERVL	-45596.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	158.0	421.5	220.5	183.5	340.0	249.5
Merged-chr5-134177641-2	chr5	134177141	134178141	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033572)	promoter-TSS (NM_033572)	-874.0	NM_033572	94254.0	Mm.29508	NM_033572	ENSMUSG00000061979	Rcc1l	5730496C04Rik|AU019812|Wbscr16	reculator of chromosome condensation 1 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-5049974-4	chr16	5049469	5050469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356320)	promoter-TSS (NM_001356320)	-59.0	NM_028720	74022.0	Mm.21652	NM_028720	ENSMUSG00000022536	Glyr1	2810419J22Rik|3930401K13Rik|AW545332|Npac	glyoxylate reductase 1 homolog (Arabidopsis)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24103341-4	chr13	24102839	24103839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026825, intron 17 of 37)	intron (NM_026825, intron 17 of 37)	-112125.0	NM_145399	214189.0	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80229136-4	chr12	80228603	80229603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 1 of 20)	intron (NM_134156, intron 1 of 20)	31268.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-91702519-4	chr13	91702021	91703021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015501, exon 2 of 2)	non-coding (NR_015501, exon 2 of 2)	-39000.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65681108-4	chr9	65680593	65681593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301307, intron 1 of 4)	intron (NM_001301307, intron 1 of 4)	4545.0	NM_001301307	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84119802-2	chr17	84119302	84120302	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41142.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112693635-4	chr12	112693119	112694119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	14779.0	NM_001100460	382639.0	Mm.11350	NM_001100460	ENSMUSG00000037638	Zbtb42	EG382639|Gm5188|simiRP58	zinc finger and BTB domain containing 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118457159-4	chr11	118456670	118457670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-2175.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148548175-4	chr5	148547647	148548647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	3526.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	23.0	48.0	29.5	4.0	12.0	12.0
Merged-chr3-36151352-2	chr3	36150852	36151852	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101478, intron 1 of 3)	CpG	272.0	NM_001101478	241944.0	Mm.260056	NM_001101478	ENSMUSG00000033883	D3Ertd254e	-	DNA segment, Chr 3, ERATO Doi 254, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87109002-4	chr11	87108456	87109456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175563)	promoter-TSS (NM_175563)	-242.0	NM_175563	270906.0	Mm.132381	NM_175563	ENSMUSG00000020493	Prr11	B930067F20Rik	proline rich 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105701099-2	chr5	105700599	105701599	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	289.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	28.5	126.0	49.5	27.0	116.5	55.5
Merged-chr10-42225302-4	chr10	42224792	42225792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	51450.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-125560949-4	chr1	125560445	125561445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028787)	promoter-TSS (NM_028787)	-57.0	NM_028787	74150.0	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30876227-4	chr14	30875737	30876737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028839, exon 8 of 8)	3' UTR (NM_028839, exon 8 of 8)	-3020.0	NM_181390	66175.0	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	11.0	22.0	20.0	9.0	62.0	42.0
Merged-chr16-10785150-4	chr16	10784674	10785674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271603, intron 1 of 1)	CpG	362.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115188825-4	chr11	115188325	115189325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033393, intron 2 of 9)	intron (NM_001033393, intron 2 of 9)	1338.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	268.0	611.5	472.0	250.5	681.0	484.5
Merged-chr7-100121556-4	chr7	100121042	100122042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133692)	promoter-TSS (NM_133692)	-42.0	NM_133692	67967.0	Mm.37562	NM_133692	ENSMUSG00000030726	Pold3	2410142G14Rik|C85233|P66|P68	polymerase (DNA-directed), delta 3, accessory subunit	protein-coding	17.5	39.0	49.5	25.0	79.5	58.0
Merged-chr5-53594161-4	chr5	53593655	53594655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359152, intron 1 of 9)	intron (NM_001359152, intron 1 of 9)	3669.0	NM_001080927	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59438597-4	chr2	59438101	59439101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46052.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79058711-4	chr8	79058211	79059211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 1 of 14)	intron (NM_001294279, intron 1 of 14)	30274.0	NM_178267	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44070828-4	chr10	44070322	44071322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65976.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32606980-4	chr2	32606466	32607466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110347)	promoter-TSS (NR_110347)	-19.0	NM_001289547	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77513329-4	chr11	77512812	77513812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024920)	promoter-TSS (NM_001024920)	-39.0	NM_001024920	216964.0	Mm.341211	NM_001024920	ENSMUSG00000044328	Trp53i13	2410019G02Rik|Tp53i13	transformation related protein 53 inducible protein 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80561539-7	chr10	80561062	80562062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025852)	promoter-TSS (NM_025852)	-2.0	NM_025852	66932.0	Mm.1116	NM_025852	ENSMUSG00000047417	Rexo1	1700021P10Rik|2610511M11Rik|AW050347|EloA-BP1|Rex1|Tceb3bp1	REX1, RNA exonuclease 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-79426488-4	chr14	79425990	79426990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024135)	promoter-TSS (NM_001024135)	-21.0	NM_001024135	211255.0	Mm.284526	NM_001024135	ENSMUSG00000043881	Kbtbd7	1110008P08Rik|AU045792|Gm295	kelch repeat and BTB (POZ) domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20426420-4	chr16	20425921	20426921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013790)	promoter-TSS (NM_013790)	-27.0	NM_176839	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32284406-1	chr17	32283906	32284906	+	1000.0	f0_c57.idr	promoter-TSS (NM_198094)	promoter-TSS (NM_198094)	-273.0	NM_020508	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62582422-4	chr10	62581920	62582920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019553, exon 15 of 15)	exon (NM_019553, exon 15 of 15)	-3963.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-112261935-4	chr2	112261433	112262433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025403)	promoter-TSS (NM_025403)	7.0	NM_025403	66181.0	Mm.272346	NM_025403	ENSMUSG00000027133	Nop10	1110036B12Rik|NOP10P|Nola3	NOP10 ribonucleoprotein	protein-coding	16.5	39.5	49.5	29.0	30.5	61.5
Merged-chr9-25508975-4	chr9	25508440	25509440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	27343.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60892982-4	chr13	60892485	60893485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	4462.0	NM_007797	13025.0	Mm.30144	NM_007797	ENSMUSG00000074874	Ctla2b	AW545568|Ctla-2b	cytotoxic T lymphocyte-associated protein 2 beta	protein-coding	21.5	91.5	59.5	21.0	91.0	58.5
Merged-chr5-122343936-4	chr5	122343468	122344468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144912, intron 5 of 10)	intron (NM_144912, intron 5 of 10)	10227.0	NM_144912	231724.0	Mm.255587	NM_144912	ENSMUSG00000038569	Rad9b	A630082N15Rik|BC021784	RAD9 checkpoint clamp component B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-48856606-4	chr11	48856116	48857116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14804.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56625648-2	chr17	56625148	56626148	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028782, intron 1 of 17)	intron (NM_028782, intron 1 of 17)	1255.0	NM_028782	74142.0	Mm.329136	NM_028782	ENSMUSG00000041168	Lonp1	1200017E13Rik|LON|Prss15	lon peptidase 1, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45318153-2	chr14	45317653	45318653	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015774, intron 1 of 15)	CpG	419.0	NM_015774	50527.0	Mm.387108	NM_015774	ENSMUSG00000021831	Ero1l	ERO1-L|Ero1a	ERO1-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-93552519-4	chr3	93552032	93553032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2585.0	NM_009112	20194.0	Mm.1	NM_009112	ENSMUSG00000041959	S100a10	42C|AA409961|AL024248|CAL12|CLP11|Cal1l|p10|p11	S100 calcium binding protein A10 (calpactin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19053764-4	chr10	19053271	19054271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-38361.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	14.0	17.0	19.5	2.5	19.0	15.0
Merged-chr17-5895522-2	chr17	5895022	5896022	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025664, intron 4 of 17)	intron (NM_025664, intron 4 of 17)	-45758.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44849082-4	chr7	44848575	44849575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290695)	promoter-TSS (NM_001290695)	4.0	NM_001042655	233204.0	Mm.27567	NM_144924	ENSMUSG00000038520	Tbc1d17	BC017607	TBC1 domain family, member 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99645202-2	chr12	99644702	99645702	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-17228.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119594264-4	chr2	119593780	119594780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015473)	promoter-TSS (NR_015473)	-16.0	NR_027832	66602.0	Mm.379181	NR_015473	ENSMUSG00000085438	1700020I14Rik	1190006L01Rik|4933437I03Rik|AI451541|AI585852|AW538376|AW558897|Cyrano	RIKEN cDNA 1700020I14 gene	ncRNA	82.5	121.0	127.5	45.5	101.0	80.5
Merged-chr4-43046200-4	chr4	43045711	43046711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172691)	promoter-TSS (NM_172691)	9.0	NR_045567	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43040366-4	chr4	43039868	43040868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253353)	promoter-TSS (NM_001253353)	-67.0	NM_001253354	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	19.5	79.0	40.5	51.0	70.0	58.5
Merged-chr11-74485677-3	chr11	74485149	74486149	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	104509.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25389362-2	chr14	25388862	25389862	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69823.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127336047-4	chr2	127335546	127336546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010090)	promoter-TSS (NM_010090)	-113.0	NM_010090	13537.0	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102976084-4	chr14	102975585	102976585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177715)	TTS (NM_177715)	6547.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-33942425-2	chr13	33941925	33942925	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040707, intron 1 of 4)	intron (NR_040707, intron 1 of 4)	-6342.0	NM_001164117	20719.0	Mm.252210	NM_009254	ENSMUSG00000060147	Serpinb6a	4930482L21Rik|D330015H01Rik|PI-6|Serpinb6|Spi3|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64336917-4	chr5	64336416	64337416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 16 of 18)	intron (NM_001289514, intron 16 of 18)	106559.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	97.0	153.0	131.0	44.5	82.0	76.0
Merged-chr10-8778117-4	chr10	8777640	8778640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	107930.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	31.0	91.5	58.5	44.0	81.0	57.5
Merged-chr18-67390705-4	chr18	67390215	67391215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026473)	promoter-TSS (NM_026473)	-16.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	46.0	91.5	68.0	57.0	75.0	82.0
Merged-chr12-104175832-3	chr12	104175342	104176342	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21970.0	NM_008458	16625.0	Mm.422814	NM_008458	ENSMUSG00000066361	Serpina3c	1A1|Kalbp|Klkbp|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3C	protein-coding	41.5	72.5	29.5	17.0	27.0	6.0
Merged-chr7-99134081-4	chr7	99133584	99134584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 1 of 14)	intron (NM_178635, intron 1 of 14)	7060.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	22.0	68.0	30.5	23.5	72.0	39.0
Merged-chr12-73716035-4	chr12	73715534	73716534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 9 of 13)	intron (NM_008856, intron 9 of 13)	131238.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75363461-4	chr18	75362979	75363979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155535, intron 6 of 6)	intron (NR_155535, intron 6 of 6)	3609.0	NR_155535	102636262.0	Mm.421168	NR_155535		Gm20544	-	predicted gene 20544	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-16184680-4	chr3	16184158	16185158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172677, intron 2 of 5)	intron (NM_172677, intron 2 of 5)	1493.0	NM_172677	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	34.0	110.5	98.5	49.0	132.0	77.0
Merged-chr13-112137773-4	chr13	112137246	112138246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	-150705.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8786328-4	chr19	8785845	8786845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177798)	promoter-TSS (NM_001177798)	-29.0	NM_146092	225895.0	Mm.220886	NM_146092	ENSMUSG00000003680	Taf6l	2810417N14Rik|BB223262|C530024J06Rik|Paf65a	TATA-box binding protein associated factor 6 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66106596-4	chr5	66106097	66107097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	PB1D7|SINE|Alu	-8418.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	77.5	202.5	146.5	73.5	188.5	131.0
Merged-chr5-136396928-2	chr5	136396428	136397428	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291238, intron 3 of 22)	ID_B1|SINE|B4	-21125.0	NR_030500	723975.0		NR_030500	ENSMUSG00000106479	Mir721	Mirn721|miRY|mir-721|mmu-mir-721	microRNA 721	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80924405-4	chr12	80923906	80924906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033786)	promoter-TSS (NR_033786)	41.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	3.0	18.0	10.0	0.0	4.0	3.0
Merged-chr4-134923576-4	chr4	134923067	134924067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023665)	promoter-TSS (NM_023665)	-58.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45060356-4	chr19	45059857	45060857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25A|LTR|ERVK	12781.0	NM_001362381	94280.0	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-35584438-4	chr5	35583931	35584931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030721, intron 2 of 18)	intron (NM_030721, intron 2 of 18)	1397.0	NM_030721	80911.0	Mm.291503	NM_030721	ENSMUSG00000029098	Acox3	BI685180|EST-s59|PCOX	acyl-Coenzyme A oxidase 3, pristanoyl	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-84513586-4	chr11	84513079	84514079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019816)	promoter-TSS (NM_019816)	-78.0	NM_019816	56321.0	Mm.257482	NM_019816	ENSMUSG00000018697	Aatf	4933415H02Rik|5830465M17Rik|Che-1|Trb	apoptosis antagonizing transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-52630689-4	chr1	52630188	52631188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142647)	promoter-TSS (NM_001142647)	-17.0	NR_024590	227094.0	Mm.83541	NM_172654	ENSMUSG00000043015	Nemp2	5330401P04Rik|9830163O08|Tmem194b	nuclear envelope integral membrane protein 2	protein-coding	25.0	46.5	55.0	7.5	27.0	33.5
Merged-chr16-17489587-2	chr16	17489087	17490087	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175178)	promoter-TSS (NM_175178)	-90.0	NM_175178	72168.0	Mm.40038	NM_175178	ENSMUSG00000022763	Aifm3	2810401C16Rik|AI840249|Aifl	apoptosis-inducing factor, mitochondrion-associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95694591-4	chr3	95694098	95695098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6681.0	NM_001301705	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	10.0	10.0	6.0	14.0	12.0	8.0
Merged-chr6-97431736-4	chr6	97431222	97432222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	27564.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-162976080-4	chr2	162975574	162976574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081338, exon 23 of 23)	3' UTR (NM_001081338, exon 23 of 23)	-11407.0	NM_001291154	27219.0	Mm.26462	NM_013731	ENSMUSG00000017868	Sgk2	AI098171|AW146006|Sgkl	serum/glucocorticoid regulated kinase 2	protein-coding	2.5	3.0	0.5	8.5	2.0	0.0
Merged-chr6-82774541-4	chr6	82774039	82775039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013820)	promoter-TSS (NM_013820)	-85.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5800569-4	chr17	5800082	5801082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045080, intron 1 of 1)	intron (NR_045080, intron 1 of 1)	1092.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47395194-2	chr14	47394694	47395694	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144553, intron 14 of 18)	intron (NM_144553, intron 14 of 18)	21334.0	NM_001145953	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	4.0	9.0	4.5	30.0	14.0	25.5
Merged-chr4-152165434-8	chr4	152164949	152165949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6582.0	NM_008236	15206.0	Mm.57038	NM_008236	ENSMUSG00000028940	Hes2	HES-2	hes family bHLH transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44474416-4	chr10	44473912	44474912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15664.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-67604614-4	chr11	67604123	67605123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109657, intron 2 of 13)	intron (NM_001109657, intron 2 of 13)	8068.0	NM_001277079	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.0	1.0	3.0	0.0	0.0	0.5
Merged-chr4-129419163-2	chr4	129418663	129419663	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21655.0	NM_153541	215627.0	Mm.428660	NM_153541	ENSMUSG00000048485	Zbtb8b	AV220464|BC023839|BOZF1|Zbtb8	zinc finger and BTB domain containing 8b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79767054-4	chr10	79766545	79767545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027505)	promoter-TSS (NR_027505)	-93.0	NR_027505	70294.0	Mm.466670	NM_144528	ENSMUSG00000035890	Rnf126	2610010O19Rik	ring finger protein 126	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75613303-4	chr2	75612803	75613803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45956.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19627252-4	chr3	19626758	19627758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17202.0	NM_001081281	381485.0	Mm.35419	NM_001081281	ENSMUSG00000060913	Trim55	D830041C10Rik|Murf2|Rnf29	tripartite motif-containing 55	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107923625-4	chr4	107923101	107924101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009949)	promoter-TSS (NM_009949)	-12.0	NM_009949	12896.0	Mm.307620	NM_009949	ENSMUSG00000028607	Cpt2	AI323697|CPTII	carnitine palmitoyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10962244-4	chr16	10961740	10962740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 3 of 3)	intron (NM_019980, intron 3 of 3)	30881.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126609817-4	chr4	126609331	126610331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145950)	promoter-TSS (NM_001145950)	-23.0	NM_001013755	230757.0	Mm.296838	NM_001013755	ENSMUSG00000073755	5730409E04Rik	7530403E16Rik|AI849033	RIKEN cDNA 5730409E04Rik gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-70040474-4	chr10	70039967	70040967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56654.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22006680-2	chr9	22006180	22007180	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293650, intron 6 of 17)	intron (NM_001293650, intron 6 of 17)	3692.0	NM_001293650	19089.0	Mm.214593	NM_008925	ENSMUSG00000003402	Prkcsh	80K-H|PKCSH	protein kinase C substrate 80K-H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86750838-2	chr11	86750338	86751338	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	B1_Mus1|SINE|Alu	6729.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8820548-2	chr19	8820048	8821048	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081196, exon 1 of 14)	exon (NM_001081196, exon 1 of 14)	1147.0	NM_001081196	68693.0	Mm.476519	NM_001081196	ENSMUSG00000071659	Hnrnpul2	1110031M08Rik|AI465155|Hnrpul2	heterogeneous nuclear ribonucleoprotein U-like 2	protein-coding	13.0	47.0	46.0	13.0	23.5	21.0
Merged-chr6-134220447-4	chr6	134219976	134220976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	-175853.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-48044355-4	chr4	48043844	48044844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015743)	promoter-TSS (NM_015743)	-961.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-64850011-4	chr8	64849512	64850512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178633)	promoter-TSS (NM_178633)	-88.0	NM_178633	77113.0	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|8530402H02Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119237525-1	chr2	119237025	119238025	+	1000.0	f1_balb.idr	intron (NM_016907, intron 1 of 10)	CpG	165.0	NM_016907	20732.0	Mm.104955	NM_016907	ENSMUSG00000027315	Spint1	HAI-1	serine protease inhibitor, Kunitz type 1	protein-coding	11.0	0.0	0.0	3.5	0.0	2.5
Merged-chr5-105595367-3	chr5	105594877	105595877	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	75906.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91412510-4	chr2	91411989	91412989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175123, intron 2 of 8)	intron (NM_175123, intron 2 of 8)	32225.0	NM_001311144	228356.0	Mm.386861	NM_175123	ENSMUSG00000040591	1110051M20Rik	AI586322	RIKEN cDNA 1110051M20 gene	protein-coding	14.0	10.5	12.0	6.0	20.0	9.0
Merged-chr13-75820130-4	chr13	75819630	75820630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19755.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	1.5	6.0	1.0	7.0	2.5	0.0
Merged-chr2-84623982-4	chr2	84623480	84624480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355067, intron 1 of 15)	intron (NM_001355067, intron 1 of 15)	25500.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	25.0	52.5	42.0	24.0	49.5	39.5
Merged-chr14-61971284-4	chr14	61970770	61971770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-288897.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-64854302-2	chr16	64853802	64854802	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357416, intron 2 of 2)	intron (NM_001357416, intron 2 of 2)	2301.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99203637-4	chr5	99203123	99204123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49304.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5802259-4	chr17	5801761	5802761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045079, intron 2 of 2)	intron (NR_045079, intron 2 of 2)	2771.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44271873-4	chr10	44271372	44272372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358596, intron 1 of 6)	L2|LINE|L2	3533.0	NM_001358596	11793.0	Mm.22264	NM_053069	ENSMUSG00000038160	Atg5	2010107M05Rik|3110067M24Rik|AW319544|Apg5l|Atg5l|C88337|Paddy	autophagy related 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-76929344-4	chr5	76928848	76929848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172146, intron 1 of 10)	intron (NM_172146, intron 1 of 10)	-21954.0	NM_001356974	67054.0	Mm.182931	NM_025939	ENSMUSG00000029247	Paics	2610511I09Rik|ADE2H1|AIRC|PAIS	phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34793266-4	chr13	34792752	34793752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53610.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-5303152-2	chr9	5302652	5303652	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009807, exon 5 of 10)	exon (NM_009807, exon 5 of 10)	4635.0	NM_009807	12362.0	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78534504-2	chr11	78534004	78535004	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159392, intron 1 of 6)	B3|SINE|B2	1756.0	NM_001159392	21927.0	Mm.386774	NM_009395	ENSMUSG00000017615	Tnfaip1	Bacurd2|Edp-1|Edp1|Tnfip1	tumor necrosis factor, alpha-induced protein 1 (endothelial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59036836-7	chr4	59036357	59037357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025277, intron 1 of 2)	intron (NM_025277, intron 1 of 2)	1701.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	11.5	40.0	23.0	11.0	46.0	18.0
Merged-chr2-159646806-4	chr2	159646301	159647301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-300540.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127667793-4	chr10	127667306	127668306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045171, intron 1 of 1)	intron (NR_045171, intron 1 of 1)	683.0	NR_045171	72243.0	Mm.482902	NR_045171	ENSMUSG00000040195	1700012D01Rik	-	RIKEN cDNA 1700012D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111758860-4	chr12	111758347	111759347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025358)	promoter-TSS (NM_001025358)	-2.0	NM_001361612	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10845640-4	chr19	10845143	10846143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023044, intron 1 of 7)	intron (NM_023044, intron 1 of 7)	3099.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-32084954-4	chr14	32084453	32085453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145460)	promoter-TSS (NM_145460)	333.0	NR_104305	105638.0	Mm.2519	NM_172254	ENSMUSG00000021905	Dph3	DELGIP1|DelgipP1|Desr1|KTI11|Zcsl2	diphthamine biosynthesis 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127537098-2	chr10	127536598	127537598	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2539.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	3.0	0.0	3.0	3.0	0.0	2.5
Merged-chr5-136565627-2	chr5	136565127	136566127	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001291233, exon 1 of 24)	exon (NM_001291233, exon 1 of 24)	354.0	NM_001291239	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47568478-4	chr14	47567962	47568962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172599)	promoter-TSS (NM_172599)	-28.0	NM_172599	100504663.0	Mm.287279	NM_172599	ENSMUSG00000037526	Atg14	4832427M01|Atg14L|D14Ertd114e|D14Ertd436e	autophagy related 14	protein-coding	26.0	47.5	26.0	24.0	27.5	18.5
Merged-chr2-49313283-4	chr2	49312775	49313775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290656, intron 8 of 9)	intron (NM_001290656, intron 8 of 9)	67375.0	NM_001290656	109241.0	Mm.440436	NM_029924	ENSMUSG00000036792	Mbd5	9430004D19Rik|AA536666|AI426407|C030040A15Rik|Gm1630	methyl-CpG binding domain protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20381621-2	chr10	20381121	20382121	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33802.0	NM_027930	71804.0	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80756889-2	chr10	80756389	80757389	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199322, intron 1 of 27)	intron (NM_199322, intron 1 of 27)	1686.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-25499663-4	chr5	25499127	25500127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081383)	promoter-TSS (NM_001081383)	-170.0	NR_030700	320965.0	Mm.32025	NR_030700		4831440E17Rik	-	RIKEN cDNA 4831440E17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-85089668-4	chr15	85089187	85090187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_080470, exon 18 of 25)	exon (NM_080470, exon 18 of 25)	42270.0	NM_080470	140557.0	Mm.182737	NM_080470	ENSMUSG00000022432	Smc1b	SMC-1B|SMC1beta|Smc1l2	structural maintenance of chromosomes 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77520583-2	chr10	77520083	77521083	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4770.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88644458-2	chr4	88643958	88644958	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177347)	promoter-TSS (NM_177347)	1.0	NM_177347	230396.0	Mm.246592	NM_177347	ENSMUSG00000063376	Ifna13	-	interferon alpha 13	protein-coding	1.5	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110781546-4	chr9	110781043	110782043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-16642.0	NM_153099	235628.0	Mm.292285	NM_153099	ENSMUSG00000044664	Prss42	Tessp2	protease, serine 42	protein-coding	4.0	17.0	7.5	10.0	5.0	16.5
Merged-chr6-146724880-4	chr6	146724388	146725388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346666)	promoter-TSS (NM_001346666)	-42.0	NM_001346666	232533.0	Mm.322121	NM_172734	ENSMUSG00000001630	Stk38l	4930473A22Rik|Ndr2|Ndr54	serine/threonine kinase 38 like	protein-coding	45.5	68.5	81.5	17.5	64.5	45.5
Merged-chr4-58911682-4	chr4	58911201	58912201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355697, intron 1 of 49)	CpG	229.0	NM_001355697	230249.0	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|Ecpas|mKIAA0368	expressed sequence AI314180	protein-coding	36.5	86.0	70.5	50.5	113.5	79.0
Merged-chr2-102901544-4	chr2	102901068	102902068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177785)	promoter-TSS (NM_001177785)	97.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	81.0	186.0	146.0	102.5	205.5	174.0
Merged-chr18-75367322-4	chr18	75366819	75367819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042660)	promoter-TSS (NM_001042660)	-46.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64205864-4	chr5	64205363	64206363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-24494.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32136535-4	chr5	32136057	32137057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008037)	promoter-TSS (NM_008037)	85.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98587259-4	chr11	98586759	98587759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025661)	promoter-TSS (NM_025661)	-14.0	NM_025661	66612.0	Mm.180546	NM_025661	ENSMUSG00000038150	Ormdl3	2810011N17Rik|AI315223	ORM1-like 3 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55801775-2	chr4	55801275	55802275	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-269300.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89177783-4	chr15	89177267	89178267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	3021.0	NM_001284506	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22706573-4	chr8	22706139	22707139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010546)	promoter-TSS (NM_010546)	-56.0	NM_001159774	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-117481186-4	chr12	117480686	117481686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35293.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	31.5	61.5	65.0	41.0	65.0	73.0
Merged-chr1-144006707-4	chr1	144006215	144007215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2566.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47050802-2	chr19	47050302	47051302	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027654, exon 1 of 10)	exon (NM_027654, exon 1 of 10)	104.0	NM_001360632	71041.0	Mm.35413	NM_027654	ENSMUSG00000025050	Pcgf6	4933407A11Rik|AI604840|MBLR|Rnf134	polycomb group ring finger 6	protein-coding	0.0	0.0	0.0	4.0	1.0	1.5
Merged-chr3-89218760-2	chr3	89218260	89219260	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_149740, intron 2 of 20)	intron (NR_149740, intron 2 of 20)	2172.0	NR_149740	21827.0	Mm.2114	NM_013691	ENSMUSG00000028047	Thbs3	TSP3|Thbs-3	thrombospondin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127299268-2	chr7	127298768	127299768	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253873, intron 2 of 30)	B1_Mus1|SINE|Alu	3008.0	NM_001253874	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78536299-4	chr11	78535807	78536807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159392)	promoter-TSS (NM_001159392)	-47.0	NM_009395	21927.0	Mm.386774	NM_009395	ENSMUSG00000017615	Tnfaip1	Bacurd2|Edp-1|Edp1|Tnfip1	tumor necrosis factor, alpha-induced protein 1 (endothelial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134548232-4	chr4	134547711	134548711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029100, intron 2 of 11)	intron (NM_029100, intron 2 of 11)	3955.0	NM_029100	74777.0	Mm.29773	NM_029100	ENSMUSG00000050989	Selenon	1110019I12Rik|AI414492|SelN|Sepn1	selenoprotein N	protein-coding	32.0	80.5	55.0	30.0	34.0	19.5
Merged-chr11-72957698-2	chr11	72957198	72958198	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	-3471.0	NM_016745	53313.0	Mm.6306	NM_016745	ENSMUSG00000020788	Atp2a3	SERCA3b|Serca3	ATPase, Ca++ transporting, ubiquitous	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27591518-4	chr7	27590995	27591995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110208)	promoter-TSS (NM_001110208)	-57.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-10107497-4	chr13	10107004	10108004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 3 of 4)	MER105|DNA|DNA	253299.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150837041-3	chr2	150836553	150837553	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 10 of 12)	intron (NR_151505, intron 10 of 12)	5517.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73951770-2	chr17	73951270	73952270	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1574.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-23433413-4	chr5	23432929	23433929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026984)	promoter-TSS (NM_026984)	924.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	131.0	406.5	289.0	198.0	353.5	299.5
Merged-chr2-16135622-4	chr2	16135141	16136141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310455, intron 33 of 38)	intron (NM_001310455, intron 33 of 38)	-220663.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50840651-4	chr15	50840135	50841135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 2 of 5)	MIR|SINE|MIR	48414.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	2.0	4.5	7.0	2.0	1.5	7.0
Merged-chr8-108901451-4	chr8	108900926	108901926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 4 of 9)	intron (NM_007496, intron 4 of 9)	-35434.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	5.0	21.5	11.0	21.0	33.0	30.0
Merged-chr10-95939941-2	chr10	95939441	95940441	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001932)	promoter-TSS (NM_001001932)	-722.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56490846-4	chr18	56490362	56491362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360917, intron 11 of 13)	intron (NM_001360917, intron 11 of 13)	-47277.0	NR_106160	102465790.0		NR_106160	ENSMUSG00000099196	Mir1258	Gm27371|mmu-mir-1258	microRNA 1258	ncRNA	35.5	64.5	21.0	20.5	69.0	52.5
Merged-chr17-51220100-4	chr17	51219587	51220587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-40735.0	NM_001285991	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77938394-4	chr18	77937883	77938883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195633)	promoter-TSS (NM_001195633)	-84.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75658042-2	chr2	75657553	75658553	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-1206.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	107.0	235.0	214.0	46.5	148.0	86.0
Merged-chr18-70436023-3	chr18	70435512	70436512	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-36442.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	52.0	157.5	81.0	46.0	86.5	66.0
Merged-chr1-58725990-4	chr1	58725488	58726488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	-4564.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147077557-4	chr5	147077123	147078123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_181730, exon 1 of 3)	5' UTR (NM_181730, exon 1 of 3)	277.0	NM_009087	20018.0	Mm.317557	NM_009087	ENSMUSG00000029642	Polr1d	1110003G10Rik|AC19|RPA16|Rpo1-3	polymerase (RNA) I polypeptide D	protein-coding	71.5	177.5	86.0	62.5	206.0	124.0
Merged-chr1-69686436-2	chr1	69685936	69686936	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011770)	promoter-TSS (NM_011770)	-476.0	NM_011770	22779.0	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34019713-4	chr10	34019212	34020212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025614)	promoter-TSS (NM_025614)	-96.0	NM_025614	66521.0	Mm.28528	NM_025614	ENSMUSG00000019782	Rwdd1	0710001K08Rik|2610002D06Rik|2700069A07Rik|IH1	RWD domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132221741-4	chr2	132221269	132222269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26019.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73757323-2	chr15	73756823	73757823	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001166389, exon 6 of 6)	3' UTR (NM_001166389, exon 6 of 6)	9297.0	NM_008975	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65772661-4	chr17	65772192	65773192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133685)	promoter-TSS (NM_133685)	60.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	52.0	157.0	113.0	59.5	87.5	85.0
Merged-chr10-81375220-2	chr10	81374720	81375720	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019757, intron 1 of 13)	intron (NM_019757, intron 1 of 13)	3150.0	NM_019757	56371.0	Mm.24202	NM_019757	ENSMUSG00000020235	Fzr1	AW108046|Cdh1|FZR|FZR2|Fyr|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130800727-4	chr4	130800234	130801234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	8197.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91765362-4	chr12	91764869	91765869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	21067.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129508105-4	chr4	129507600	129508600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5481.0	NM_010807	17357.0	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	56.0	84.0	77.5	21.5	111.5	46.0
Merged-chr6-34371867-4	chr6	34371390	34372390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12357.0	NM_172398	67861.0	Mm.70371	NM_172398	ENSMUSG00000061758	Akr1b10	2310005E10Rik|Akr1b16	aldo-keto reductase family 1, member B10 (aldose reductase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56757576-4	chr17	56757092	56758092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008738)	promoter-TSS (NM_008738)	-44.0	NM_008738	18188.0	Mm.8074	NM_008738	ENSMUSG00000039481	Nrtn	NTN	neurturin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45896834-4	chr7	45896345	45897345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291064)	promoter-TSS (NM_001291064)	-134.0	NM_021482	58867.0	Mm.214217	NM_021482	ENSMUSG00000040231	Syngr4	1700016O14Rik	synaptogyrin 4	protein-coding	0.0	6.5	1.5	2.0	3.5	3.0
Merged-chr11-120632726-4	chr11	120632281	120633281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010756, intron 1 of 2)	CpG	766.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95530924-4	chr10	95530400	95531400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080560, intron 1 of 3)	MTD|LTR|ERVL-MaLR	15738.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-98018330-4	chr5	98017820	98018820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133738, intron 3 of 16)	intron (NM_133738, intron 3 of 16)	12642.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	5.5	2.5	0.0	3.5	0.0	3.0
Merged-chr10-58255437-4	chr10	58254929	58255929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027375)	promoter-TSS (NM_027375)	-97.0	NM_027375	70297.0	Mm.25531	NM_027375	ENSMUSG00000038039	Gcc2	0610043A03Rik|2210420P05Rik|2600014C01Rik|AW112121|mKIAA0336	GRIP and coiled-coil domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-67755156-4	chr13	67754639	67755639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001130)	promoter-TSS (NM_001001130)	-5.0	NM_001001130	22746.0	Mm.288396	NM_001001130	ENSMUSG00000058331	Zfp85	KRAB19|Rslcan2|Zfp71|Zfp85-rs1	zinc finger protein 85	protein-coding	65.0	69.0	113.5	41.5	76.5	72.5
Merged-chr19-11916068-2	chr19	11915568	11916568	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172635, intron 2 of 18)	intron (NM_172635, intron 2 of 18)	3669.0	NM_172635	225929.0	Mm.42711	NM_172635	ENSMUSG00000046139	Patl1	AV312086|Pat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding	19.0	41.0	22.5	17.5	37.5	20.0
Merged-chr1-170998419-4	chr1	170997904	170998904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20522.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-122956438-2	chr9	122955938	122956938	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010620, intron 1 of 34)	B1_Mus2|SINE|Alu	5357.0	NM_010620	209737.0	Mm.278920	NM_010620	ENSMUSG00000036768	Kif15	3110023M17Rik|3930402I10Rik|D330038N01|HKLP2|Knsl7|b2b1117.1Clo|b2b1117.1aClo	kinesin family member 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69458549-4	chr12	69458056	69459056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16994.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	67.0	117.5	93.5	42.5	99.5	80.5
Merged-chr9-36768646-4	chr9	36768128	36769128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1050.0	NM_008408	16430.0	Mm.2863	NM_008408	ENSMUSG00000032116	Stt3a	AA408947|BB081708|Itm1	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	protein-coding	163.0	402.0	343.5	126.5	279.5	285.5
Merged-chr16-32396402-4	chr16	32395899	32396899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4107.0	NM_001160402	277203.0	Mm.484240	NM_001160402	ENSMUSG00000079625	Tm4sf19	EG277203	transmembrane 4 L six family member 19	protein-coding	8.0	10.0	0.5	6.0	11.0	25.5
Merged-chr15-25635266-2	chr15	25634766	25635766	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 1 of 40)	(TG)n|Simple_repeat|Simple_repeat	12716.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58889453-4	chr15	58888991	58889991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175151)	TTS (NM_175151)	262.0	NM_175226	75841.0	Mm.4537	NM_175226	ENSMUSG00000037075	Rnf139	4930555P18Rik	ring finger protein 139	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-138143820-4	chr3	138143319	138144319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163457)	promoter-TSS (NM_001163457)	20.0	NM_001348197	108943.0	Mm.471692	NM_175389	ENSMUSG00000004127	Trmt10a	3110023L08Rik|AA794508|Rg9mtd2|Rnmtd2	tRNA methyltransferase 10A	protein-coding	70.0	145.5	135.0	65.0	179.0	102.0
Merged-chr17-28738937-2	chr17	28738437	28739437	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168513, intron 9 of 11)	intron (NM_001168513, intron 9 of 11)	-30380.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83727857-4	chr17	83727358	83728358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 3 of 16)	intron (NM_054082, intron 3 of 16)	21695.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0.0	0.0	0.0	5.0	16.5	0.5
Merged-chr19-56680780-2	chr19	56680280	56681280	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-41592.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129604299-4	chr2	129603793	129604793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	8831.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	31.0	33.5	68.0	36.5	35.5	51.5
Merged-chr13-111802491-2	chr13	111801991	111802991	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	6502.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-86883660-2	chr8	86883160	86884160	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	B2_Mm2|SINE|B2	1598.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0.0	0.0	1.0	0.0	1.0	0.0
Merged-chr9-86478935-2	chr9	86478435	86479435	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177208, intron 1 of 38)	intron (NM_177208, intron 1 of 38)	11781.0	NM_177208	320615.0	Mm.245500	NM_177208	ENSMUSG00000034973	Dopey1	B130005I07Rik|BC035275|C130028L17|D9Ertd809e	dopey family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108340546-4	chr9	108340048	108341048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001329528)	TTS (NM_001329528)	1468.0	NM_001329527	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136125724-4	chr4	136125232	136126232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-18090.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	77.0	214.0	152.0	106.0	189.0	145.0
Merged-chr16-21204562-4	chr16	21204060	21205060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010143)	promoter-TSS (NM_010143)	-235.0	NM_010143	13845.0	Mm.6972	NM_010143	ENSMUSG00000005958	Ephb3	AW456895|Cek10|Etk2|HEK2|MDK5|Sek4|Tyro6	Eph receptor B3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11428970-2	chr2	11428470	11429470	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30470.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37526368-4	chr13	37525853	37526853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	181008.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	11.0	15.5	18.5	7.0	18.5	27.0
Merged-chr19-5845465-6	chr19	5844971	5845971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003513)	promoter-TSS (NR_003513)	7.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83171341-4	chr15	83170823	83171823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029787, intron 1 of 8)	intron (NM_029787, intron 1 of 8)	885.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-22398593-4	chr6	22398063	22399063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42482.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-175692838-4	chr1	175692319	175693319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010098)	promoter-TSS (NM_010098)	-187.0	NM_010098	13603.0	Mm.32744	NM_010098	ENSMUSG00000026525	Opn3	ERO|Ecpn	opsin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-70201045-4	chr10	70200563	70201563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3601.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32668228-4	chr9	32667720	32668720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27822.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11461117-4	chr8	11460582	11461582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-16847.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-44617115-4	chr15	44616603	44617603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2124.0	NM_001357690	55960.0	Mm.287896	NM_019480	ENSMUSG00000022339	Ebag9	AI835379|Rcas1	estrogen receptor-binding fragment-associated gene 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104110937-4	chr8	104110437	104111437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 1 of 11)	intron (NM_009868, intron 1 of 11)	-5064.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31081407-4	chr16	31080911	31081911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198626)	promoter-TSS (NM_198626)	21.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	3.0	1.5	15.0	0.0	10.0	5.0
Merged-chr3-27233028-2	chr3	27232528	27233528	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 3 of 4)	B4|SINE|B4	50024.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47595449-4	chr9	47594955	47595955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	65103.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	13.5	28.0	45.5	35.5	44.5	57.0
Merged-chr5-143112565-3	chr5	143112089	143113089	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080561, intron 1 of 16)	CpG	431.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-8871106-4	chr13	8870601	8871601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172445)	promoter-TSS (NM_172445)	-57.0	NM_172445	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80183443-1	chr11	80182943	80183943	+	1000.0	f1_balb.idr	promoter-TSS (NM_028019)	promoter-TSS (NM_028019)	-429.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	26.5	155.0	62.5	74.5	139.5	75.5
Merged-chr5-45857845-4	chr5	45857308	45858308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163073)	promoter-TSS (NM_001163073)	-268.0	NM_001359873	209707.0	Mm.71498	NM_172153	ENSMUSG00000015882	Lcorl	Mlr1	ligand dependent nuclear receptor corepressor-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118491192-1	chr7	118490692	118491692	+	1000.0	f1_balb.idr	exon (NM_001033380, exon 1 of 1)	exon (NM_001033380, exon 1 of 1)	783.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	89.0	211.0	279.0	113.0	223.5	227.0
Merged-chr18-50033022-4	chr18	50032520	50033520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360935, intron 1 of 1)	intron (NM_001360935, intron 1 of 1)	2036.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	47.5	127.0	72.0	63.0	143.5	70.0
Merged-chr8-23167922-2	chr8	23167422	23168422	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14651.0	NM_029002	74561.0	Mm.290028	NM_029002	ENSMUSG00000063672	Nkx6-3	9130417I07Rik|Nkx6.3	NK6 homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-52722798-4	chr1	52722309	52723309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357464, intron 1 of 7)	intron (NM_001357464, intron 1 of 7)	4509.0	NM_178081	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	1.5	0.0	12.0	2.0	3.5	8.0
Merged-chr11-109369366-4	chr11	109368852	109369852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010303, intron 2 of 3)	intron (NM_010303, intron 2 of 3)	-5698.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121797849-4	chr14	121797346	121798346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134074)	promoter-TSS (NM_134074)	-112.0	NM_134074	105445.0	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124719157-2	chr6	124718657	124719657	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029792)	promoter-TSS (NR_029792)	-767.0	NR_029792	723944.0		NR_029792	ENSMUSG00000065462	Mir200c	Mirn200c|mir-200c	microRNA 200c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-6217149-4	chr6	6216645	6217645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015829)	promoter-TSS (NM_015829)	28.0	NM_015829	50799.0	Mm.24513	NM_015829	ENSMUSG00000015112	Slc25a13	AI785475|Ctrn	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60884203-4	chr2	60883712	60884712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	MLT1M|LTR|ERVL-MaLR	-2774.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23749799-4	chr18	23749298	23750298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_126066)	TTS (NR_126066)	2507.0	NR_126066	100502834.0	Mm.213614	NR_126066	ENSMUSG00000086287	Gm15972	-	predicted gene 15972	ncRNA	0.0	7.0	10.0	3.0	15.0	2.5
Merged-chr2-68242263-4	chr2	68241790	68242790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 16 of 17)	intron (NM_016866, intron 16 of 17)	137618.0	NM_020283	26877.0	Mm.226435	NM_020283	ENSMUSG00000034780	B3galt1	beta3Gal-T1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77981857-4	chr11	77981344	77982344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174852)	promoter-TSS (NM_174852)	-972.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100656500-4	chr5	100655980	100656980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027978, intron 6 of 6)	intron (NM_027978, intron 6 of 6)	17776.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	10.5	80.0	47.0	28.0	77.5	54.0
Merged-chr4-3683067-4	chr4	3682571	3683571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	4950.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	77.0	208.0	84.0	41.5	149.5	92.0
Merged-chr4-12083436-4	chr4	12082952	12083952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110955, intron 2 of 28)	RodERV21-int|LTR|ERV1	4505.0	NM_177861	329795.0	Mm.475125	NM_177861	ENSMUSG00000049488	Tmem67	5330408M12Rik|B230117O07|b2b1163.1Clo|b2b1291.1Clo	transmembrane protein 67	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79173491-4	chr3	79173016	79174016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27641.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	96.5	167.5	86.0	88.5	169.5	91.5
Merged-chr11-118211989-4	chr11	118211507	118212507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	735.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-66257428-2	chr2	66256928	66257928	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290669)	promoter-TSS (NM_001290669)	-811.0	NM_001290669	73668.0	Mm.250868	NM_001047604	ENSMUSG00000034848	Ttc21b	2410066K11Rik|Thm1|aln|mKIAA1992	tetratricopeptide repeat domain 21B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70839232-4	chr9	70838728	70839728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	95580.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53310486-4	chr19	53309983	53310983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008542)	promoter-TSS (NM_001008542)	-23.0	NM_001008542	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98283295-4	chr12	98282792	98283792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR1c|LTR|Gypsy	14657.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-13659105-4	chr1	13658599	13659599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145381, intron 1 of 6)	intron (NM_145381, intron 1 of 6)	1410.0	NM_145381	212442.0	Mm.89572	NM_145381	ENSMUSG00000025937	Lactb2	Cgi-83|E430032H21Rik	lactamase, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84155803-4	chr3	84155301	84156301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029797)	promoter-TSS (NM_029797)	-15.0	NM_029797	76915.0	Mm.274829	NM_029797	ENSMUSG00000033752	Mnd1	2610034E18Rik|AI591601|Gaj	meiotic nuclear divisions 1	protein-coding	10.5	21.0	5.0	15.0	18.0	6.5
Merged-chr2-27424337-2	chr2	27423837	27424837	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	3271.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77737369-2	chr11	77736869	77737869	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12076.0	NM_009965	12957.0	Mm.22830	NM_009965	ENSMUSG00000000724	Cryba1	BA3/A1|Cryb	crystallin, beta A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34624903-4	chr18	34624409	34625409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289606)	promoter-TSS (NM_001289606)	-27.0	NM_009004	19348.0	Mm.258846	NM_009004	ENSMUSG00000003779	Kif20a	AA415432|Rab6kifl	kinesin family member 20A	protein-coding	9.0	52.0	34.0	27.0	52.5	40.5
Merged-chr16-17233576-4	chr16	17233067	17234067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178922)	promoter-TSS (NM_178922)	-20.0	NM_178922	58180.0	Mm.261602	NM_178922	ENSMUSG00000050240	Hic2	AA409108|HRG22|mKIAA1020	hypermethylated in cancer 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73804023-4	chr13	73803528	73804528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 17 of 24)	intron (NM_001360694, intron 17 of 24)	40331.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	0.5	0.5	9.5	4.0	11.0	9.5
Merged-chr11-21567903-4	chr11	21567404	21568404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316675, intron 1 of 8)	intron (NM_001316675, intron 1 of 8)	4030.0	NM_008618	17449.0	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	27.0	66.0	34.0	42.0	38.0	32.0
Merged-chr13-25791486-4	chr13	25790984	25791984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	174832.0	NR_045062	100503530.0	Mm.86763	NR_045062	ENSMUSG00000086531	Gm11351	-	predicted gene 11351	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85592182-1	chr1	85591682	85592682	+	1000.0	f1_balb.idr	intron (NM_030194, intron 3 of 11)	Lx7|LINE|L1	6628.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126845782-4	chr8	126845295	126846295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3225.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93822539-4	chr2	93822031	93823031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010163)	promoter-TSS (NM_010163)	37.0	NM_010163	14043.0	Mm.4336	NM_010163	ENSMUSG00000027198	Ext2	AI893565	exostoses (multiple) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-82976138-3	chr9	82975639	82976639	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081216)	promoter-TSS (NM_001081216)	-650.0	NM_001081216	83946.0	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83748839-4	chr8	83748329	83749329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7518.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	130.5	314.5	245.5	102.0	268.5	177.0
Merged-chr10-120979441-4	chr10	120978937	120979937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081193)	promoter-TSS (NM_001081193)	-107.0	NM_001081193	380664.0	Mm.339371	NM_001081193	ENSMUSG00000048661	Lemd3	AI316861|Man1	LEM domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45002194-4	chr13	45001682	45002682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025772)	promoter-TSS (NM_025772)	-86.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.0	5.0	0.0	1.5	1.5	0.0
Merged-chr3-95740274-2	chr3	95739774	95740774	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252653)	promoter-TSS (NM_001252653)	-705.0	NM_001252653	13601.0	Mm.3433	NM_007899	ENSMUSG00000028108	Ecm1	AI663821|p85	extracellular matrix protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119232813-4	chr4	119232315	119233315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286148)	promoter-TSS (NM_001286148)	-91.0	NM_001012400	230696.0	Mm.473722	NM_001012400	ENSMUSG00000078584	AU022252	AI450326	expressed sequence AU022252	protein-coding	0.0	10.5	4.0	0.0	1.5	1.5
Merged-chr1-54250673-4	chr1	54250147	54251147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030025)	promoter-TSS (NM_030025)	-36.0	NM_030025	78016.0	Mm.67455	NM_030025	ENSMUSG00000025983	Ccdc150	4930511H11Rik	coiled-coil domain containing 150	protein-coding	1.0	1.5	0.5	0.0	0.0	5.5
Merged-chr6-4798549-4	chr6	4798024	4799024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51218.0	NM_130877	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117779598-4	chr11	117779094	117780094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_154387)	promoter-TSS (NR_154387)	54.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29908222-2	chr7	29907700	29908700	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243908)	promoter-TSS (NM_001243908)	-317.0	NM_001243908	73729.0	Mm.333743	NM_001243908	ENSMUSG00000099689	Zfp383	1110003H10Rik	zinc finger protein 383	protein-coding	107.0	233.5	164.5	102.0	216.0	149.0
Merged-chr4-17302-1	chr4	16802	17802	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-3154781.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88515253-4	chr15	88514753	88515753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-85049.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9630695-4	chr4	9630190	9631190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001177856, exon 5 of 5)	3' UTR (NM_001177856, exon 5 of 5)	13027.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	73.0	157.5	121.5	111.0	154.5	149.0
Merged-chr16-88480346-4	chr16	88479845	88480845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26633.0	NM_181490	239931.0	Mm.126860	NM_181490	ENSMUSG00000055811	Cldn17	-	claudin 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-102688362-4	chr13	102687877	102688877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR104_Mam|LTR|Gypsy	-5170.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3658033-4	chr2	3657540	3658540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55418.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141273431-4	chr4	141272927	141273927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5012.0	NR_151527	100503810.0		NR_151527	ENSMUSG00000085395	Gm13056	-	predicted gene 13056	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-37419756-4	chr3	37419254	37420254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163511)	promoter-TSS (NM_001163511)	-158.0	NM_153561	229228.0	Mm.436967	NM_153561	ENSMUSG00000050174	Nudt6	Asfgf2b	nudix (nucleoside diphosphate linked moiety X)-type motif 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-119902582-4	chr6	119902067	119903067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011236)	promoter-TSS (NM_011236)	-131.0	NM_001166382	19365.0	Mm.149	NM_011236	ENSMUSG00000030166	Rad52	Rad52yh	RAD52 homolog, DNA repair protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19228767-4	chr7	19228269	19229269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207525, intron 1 of 1)	CpG	380.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	40.0	95.5	82.0	15.0	101.5	55.0
Merged-chr19-6869606-4	chr19	6869083	6870083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19-int|LTR|ERVK	-11372.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120487112-4	chr8	120486614	120487614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1752.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-51934186-4	chr16	51933682	51934682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53105.0	NR_153657	629091.0	Mm.364775	NR_153657		Gm29686	-	predicted gene, 29686	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-69043637-2	chr2	69043137	69044137	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 4 of 10)	intron (NM_001347161, intron 4 of 10)	-92163.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142822478-2	chr5	142821978	142822978	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5091.0	NM_001122730	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107872300-2	chr9	107871800	107872800	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029169, intron 1 of 20)	intron (NM_029169, intron 1 of 20)	519.0	NM_011251	19654.0	Mm.139926	NM_011251	ENSMUSG00000032582	Rbm6	4930506F14Rik|Def-3|NY-LU-12|g16|mKIAA4015	RNA binding motif protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74222009-2	chr17	74221509	74222509	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133771, intron 6 of 8)	intron (NM_133771, intron 6 of 8)	72854.0	NM_133771	76890.0	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-9859156-4	chr1	9858660	9859660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037759, intron 1 of 16)	intron (NM_001037759, intron 1 of 16)	10879.0	NM_001037759	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64281576-4	chr9	64281056	64282056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324557)	promoter-TSS (NM_001324557)	-29.0	NM_025372	66131.0	Mm.196219	NM_025372	ENSMUSG00000032397	Tipin	1110005A05Rik|1110018P21Rik	timeless interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79017474-4	chr11	79016893	79017893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 17 of 17)	intron (NM_013571, intron 17 of 17)	-6204.0	NR_045873	790910.0	Mm.440410	NR_045873		Gm11201	-	predicted gene 11201	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104663667-3	chr9	104663170	104664170	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	94187.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	8.0	2.5	9.0	9.5	5.0	16.0
Merged-chr6-88903919-4	chr6	88903418	88904418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011906, intron 1 of 11)	intron (NM_011906, intron 1 of 11)	1667.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6565374-4	chr15	6564869	6565869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14478.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38514611-4	chr2	38514120	38515120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159631, intron 1 of 9)	intron (NM_001159631, intron 1 of 9)	2744.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43578188-2	chr4	43577688	43578688	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172866)	promoter-TSS (NM_172866)	-547.0	NM_172866	242406.0	Mm.259311	NM_172866	ENSMUSG00000028468	Rgp1	1110029E03Rik|AI527196|F730001J03|mKIAA0258	RAB6A GEF compex partner 1	protein-coding	12.0	26.0	15.5	7.0	5.5	10.0
Merged-chr10-81128214-2	chr10	81127714	81128714	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-8057.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127560793-2	chr10	127560293	127561293	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 42 of 88)	intron (NM_008512, intron 42 of 88)	-26234.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.0	3.5	1.5	4.0	5.0	0.0
Merged-chr8-115612327-4	chr8	115611819	115612819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_B_Mam|LINE|RTE-X	94575.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56117466-2	chr17	56116966	56117966	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025874)	promoter-TSS (NM_025874)	82.0	NM_025874	66968.0	Mm.254985	NM_025874	ENSMUSG00000011305	Plin5	2310076L09Rik|AI415325|AW109675|Lsdp5|MLDP|PAT-1	perilipin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6471951-4	chr2	6471477	6472477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	119241.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137729728-2	chr4	137729228	137730228	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_138591, exon 24 of 24)	non-coding (NR_138591, exon 24 of 24)	5267.0	NR_138592	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	5.5	4.5	5.5	0.0	4.0	3.0
Merged-chr14-8093587-4	chr14	8093083	8094083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4628.0	NM_145458	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110663051-4	chr9	110662556	110663556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	L1MB4|LINE|L1	6553.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	1.0	5.0	5.0	10.0	4.5	9.0
Merged-chr8-45332793-2	chr8	45332293	45333293	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133969, exon 1 of 11)	exon (NM_133969, exon 1 of 11)	403.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6517806-4	chr4	6517288	6518288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63517.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115676602-4	chr6	115676090	115677090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356334)	promoter-TSS (NM_001356334)	45.0	NM_001356333	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-38107983-1	chr7	38107483	38108483	+	1000.0	f0_c57.idr	promoter-TSS (NM_007633)	promoter-TSS (NM_007633)	-493.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	108.0	181.5	222.0	63.5	147.0	159.5
Merged-chr8-128680777-4	chr8	128680302	128681302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4852.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35001020-4	chr17	35000544	35001544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033075)	promoter-TSS (NM_033075)	137.0	NM_011690	22321.0	Mm.28420	NM_011690	ENSMUSG00000007029	Vars	Bat6|D17H6S56E|G7a|Vars2	valyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-47675234-4	chr8	47674722	47675722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023503)	promoter-TSS (NM_023503)	-63.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81570970-4	chr10	81570471	81571471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4316.0	NM_019725	21886.0	Mm.38608	NM_019725	ENSMUSG00000034771	Tle2	Grg2|mKIAA4188	transducin-like enhancer of split 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75754605-4	chr14	75754113	75755113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177381)	promoter-TSS (NM_177381)	-120.0	NM_177381	338337.0	Mm.86507	NM_177381	ENSMUSG00000034893	Cog3	E430004N23	component of oligomeric golgi complex 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-119056724-4	chr10	119056216	119057216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6217.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	54.5	85.0	33.5	27.5	99.5	26.5
Merged-chr7-142481355-2	chr7	142480854	142481854	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271523, intron 1 of 10)	intron (NM_001271523, intron 1 of 10)	4341.0	NM_001271523	16985.0	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr14-26534979-4	chr14	26534470	26535470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347494)	promoter-TSS (NM_001347494)	-346.0	NM_001310445	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50870317-4	chr15	50869824	50870824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032000, intron 1 of 5)	intron (NM_032000, intron 1 of 5)	18725.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	39.0	56.0	43.5	19.0	98.5	56.5
Merged-chr16-10545339-4	chr16	10544852	10545852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204229)	promoter-TSS (NM_001204229)	13.0	NM_001204229	74374.0	Mm.159176	NM_177562	ENSMUSG00000068663	Clec16a	4932416N17Rik|curt|mKIAA0350	C-type lectin domain family 16, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152742632-4	chr2	152742127	152743127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6376.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	10.5	38.0	43.5	14.5	24.0	23.0
Merged-chr2-122771196-4	chr2	122770686	122771686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027888)	promoter-TSS (NR_027888)	-527.0	NR_027888	59010.0	Mm.28986	NM_021507	ENSMUSG00000005803	Sqor	0610039J17Rik|4930557M22Rik|Sqrdl	sulfide quinone oxidoreductase	protein-coding	56.5	115.0	85.5	37.5	107.0	48.5
Merged-chr15-97880718-4	chr15	97880192	97881192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009504, intron 3 of 9)	intron (NM_009504, intron 3 of 9)	27604.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120792720-2	chr11	120792220	120793220	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026824, exon 7 of 14)	exon (NM_026824, exon 7 of 14)	3675.0	NM_026824	68730.0	Mm.180622	NM_026824	ENSMUSG00000025155	Dus1l	1110032N12Rik	dihydrouridine synthase 1-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43877592-4	chr5	43877070	43878070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	8761.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62122743-4	chr9	62122237	62123237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_039595)	promoter-TSS (NR_039595)	-143.0	NR_039595	100628602.0		NR_039595	ENSMUSG00000092696	Mir5133	mir-5133|mmu-mir-5133|mu-mir-5133	microRNA 5133	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71272604-4	chr8	71272086	71273086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142323)	promoter-TSS (NM_001142323)	4.0	NM_001163042	76478.0	Mm.27355	NM_029621	ENSMUSG00000035439	Haus8	2410004L22Rik|Hice1	4HAUS augmin-like complex, subunit 8	protein-coding	49.0	111.0	70.0	54.5	121.5	83.5
Merged-chr14-44103911-4	chr14	44103395	44104395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001012766)	TTS (NM_001012766)	1008.0	NM_017388	53876.0	Mm.327386	NM_017388		Ear3	Rnase3|mR3	eosinophil-associated, ribonuclease A family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69004546-4	chr3	69004045	69005045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133786)	promoter-TSS (NM_133786)	25.0	NM_026641	68259.0	Mm.389451	NM_026641	ENSMUSG00000027778	Ift80	4921524P20Rik|Wdr56|mKIAA1374	intraflagellar transport 80	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3493152-4	chr8	3492661	3493661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080461)	promoter-TSS (NM_080461)	23.0	NM_080461	140482.0	Mm.299073	NM_080461	ENSMUSG00000047264	Zfp358	Zfend	zinc finger protein 358	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72548398-4	chr8	72547899	72548899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027485)	promoter-TSS (NM_027485)	-89.0	NM_027485	70625.0	Mm.235885	NM_027485	ENSMUSG00000045248	Med26	5730493L18Rik|AI414941|AW495270|Crsp7	mediator complex subunit 26	protein-coding	15.5	87.5	75.5	36.5	65.0	96.0
Merged-chr11-5762275-6	chr11	5761784	5762784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361588)	promoter-TSS (NM_001361588)	92.0	NM_001361588	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	160.0	349.0	313.0	156.5	376.0	289.5
Merged-chr11-115001668-4	chr11	115001130	115002130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134158, exon 1 of 4)	5' UTR (NM_134158, exon 1 of 4)	250.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125256746-4	chr6	125256236	125257236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8789.0	NR_015527	73870.0	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129883082-4	chr4	129882507	129883507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-23219.0	NR_045190	319894.0	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	17.0	82.5	46.0	32.0	41.5	33.0
Merged-chr16-55907249-4	chr16	55906732	55907732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028815, intron 10 of 10)	intron (NM_028815, intron 10 of 10)	-11953.0	NM_001134457	385658.0	Mm.310635	NM_001134457	ENSMUSG00000075033	Nxpe3	Fam55c|Gm1752|Gm611	neurexophilin and PC-esterase domain family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-21488956-4	chr17	21488472	21489472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013843)	promoter-TSS (NM_013843)	-16.0	NM_013843	24132.0	Mm.42140	NM_013843	ENSMUSG00000057409	Zfp53	D030067O06Rik|KRAZ1|Zfp-53|Zfp118|zfas8	zinc finger protein 53	protein-coding	10.0	25.0	3.5	10.0	21.0	3.5
Merged-chr11-21403064-4	chr11	21402561	21403561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31794.0	NM_001290634	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91481000-2	chr2	91480500	91481500	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 15 of 37)	intron (NM_172668, intron 15 of 37)	23469.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	1.5	2.5	0.0	1.0	0.5	6.5
Merged-chr9-21032917-2	chr9	21032417	21033417	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035438)	promoter-TSS (NR_035438)	-589.0	NR_035438	100316681.0		NR_035438	ENSMUSG00000084663	Mir1900	Mirn1900|mmu-mir-1900	microRNA 1900	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161251576-2	chr1	161251070	161252070	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_007453)	promoter-TSS (NM_007453)	-360.0	NM_001303408	11758.0	Mm.186185	NM_007453	ENSMUSG00000026701	Prdx6	1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2	peroxiredoxin 6	protein-coding	14.5	53.0	29.5	0.0	36.5	25.0
Merged-chr16-17911394-4	chr16	17910889	17911889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022408)	promoter-TSS (NM_022408)	-41.0	NM_001081633	27886.0	Mm.256480	NM_022408	ENSMUSG00000003527	Dgcr14	AI462402|D16H22S1269E|Dgcr1|Dgsi|ES2|Es2el|Ess2	DiGeorge syndrome critical region gene 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-116972754-4	chr2	116972252	116973252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72600.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-127446752-4	chr6	127446258	127447258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346513)	promoter-TSS (NM_001346513)	-82.0	NM_001346513	101187.0	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5803671-4	chr19	5803157	5804157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002847)	promoter-TSS (NR_002847)	-985.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65790268-3	chr9	65789757	65790757	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172536, intron 2 of 9)	intron (NM_172536, intron 2 of 9)	37307.0	NM_172536	214812.0	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding	0.0	0.5	0.0	7.5	0.0	0.0
Merged-chr11-69396134-4	chr11	69395628	69396628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045525)	promoter-TSS (NM_001045525)	337.0	NM_030083	78304.0	Mm.45683	NM_030083	ENSMUSG00000059278	Naa38	1500034E06Rik|Lsmd1	N(alpha)-acetyltransferase 38, NatC auxiliary subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136675108-4	chr1	136674603	136675603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-8293.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-40953416-4	chr13	40952914	40953914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133219, intron 1 of 2)	MER20|DNA|hAT-Charlie	35780.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150909723-4	chr2	150909219	150910219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163476, exon 1 of 5)	exon (NM_001163476, exon 1 of 5)	125.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60774528-4	chr18	60774047	60775047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020600)	promoter-TSS (NM_020600)	-49.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	74.5	281.0	267.0	51.5	241.5	165.0
Merged-chr3-107760287-4	chr3	107759799	107760799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001113530, exon 1 of 9)	5' UTR (NM_001113530, exon 1 of 9)	170.0	NM_001113530	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57793153-4	chr10	57792651	57793651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1393.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-37644256-4	chr18	37643776	37644776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175770)	promoter-TSS (NM_175770)	-72.0	NM_175770	24074.0	Mm.236009	NM_175770	ENSMUSG00000051316	Taf7	55kDa|AI607308|BB007175|TAFII55|Taf2f	TATA-box binding protein associated factor 7	protein-coding	40.5	101.0	87.0	63.5	120.5	79.0
Merged-chr8-25052127-4	chr8	25051616	25052616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 10 of 11)	intron (NM_031257, intron 10 of 11)	-13154.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	52.5	92.5	84.0	57.5	82.5	80.5
Merged-chr2-129310023-4	chr2	129309529	129310529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010554)	promoter-TSS (NM_010554)	-57.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	34.5	96.0	56.5	41.0	72.5	44.0
Merged-chr8-36252189-2	chr8	36251692	36252692	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2676.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	12.0	17.5	17.0	31.0	104.0	56.0
Merged-chr19-29675651-4	chr19	29675138	29676138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22303.0	NM_029993	77836.0	Mm.138437	NM_029993	ENSMUSG00000024806	Mlana	A930034P04Rik|Mart1	melan-A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107696636-4	chr3	107696154	107697154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357112)	promoter-TSS (NM_001357112)	-94.0	NM_145542	229709.0	Mm.220328	NM_145542	ENSMUSG00000027893	Ahcyl1	1110034F20Rik|AA409031|AA414901|Ahcy-rs3|DCAL|Irbit	S-adenosylhomocysteine hydrolase-like 1	protein-coding	0.5	13.0	16.0	0.5	21.5	19.0
Merged-chr18-12956188-3	chr18	12955698	12956698	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14357.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59747458-2	chr15	59746958	59747958	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47501.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88532922-2	chr3	88532422	88533422	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029890, intron 1 of 1)	CpG	527.0	NM_001029890	72640.0	Mm.275154	NM_001029890	ENSMUSG00000074480	Mex3a	2700083E18Rik|Gm411|Rkhd4	mex3 RNA binding family member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-42049617-4	chr13	42049114	42050114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2407.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0.0	1.5	1.0	2.0	0.0	0.5
Merged-chr6-142757266-4	chr6	142756755	142757755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009908, intron 1 of 7)	intron (NM_009908, intron 1 of 7)	569.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84412803-4	chr10	84412315	84413315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 1 of 6)	intron (NM_001004363, intron 1 of 6)	27656.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23676765-4	chr17	23676250	23677250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013749, intron 1 of 3)	CpG	699.0	NM_001161746	27279.0	Mm.28518	NM_013749	ENSMUSG00000023905	Tnfrsf12a	AI255180|C87282|Fn14|HPIP|TWEAK-R|TweakR	tumor necrosis factor receptor superfamily, member 12a	protein-coding	0.0	15.0	5.5	4.5	5.0	7.0
Merged-chr10-128459914-2	chr10	128459414	128460414	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114097, intron 1 of 27)	intron (NM_001114097, intron 1 of 27)	678.0	NM_001114097	68094.0	Mm.417338	NM_198160	ENSMUSG00000025369	Smarcc2	5930405J04Rik	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46516040-7	chr18	46515545	46516545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173423, intron 2 of 2)	L1MB8|LINE|L1	9926.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156560646-4	chr1	156560118	156561118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	1831.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	39.0	114.5	108.5	13.0	26.0	27.5
Merged-chr17-6317482-4	chr17	6316989	6317989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166629)	promoter-TSS (NM_001166629)	-15.0	NM_001166629	100310872.0	Mm.381893	NM_001166629	ENSMUSG00000092074	Dynlt1a	-	dynein light chain Tctex-type 1A	protein-coding	14.0	38.5	34.5	5.0	34.5	24.5
Merged-chr11-70700261-4	chr11	70699757	70700757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252485)	promoter-TSS (NM_001252485)	-102.0	NM_001252485	103844.0	Mm.101581	NM_213729	ENSMUSG00000057054	Inca1	AI842396	inhibitor of CDK, cyclin A1 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80169822-4	chr11	80169331	80170331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 6 of 10)	B3|SINE|B2	-14041.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	15.5	42.0	29.0	37.5	34.5	47.5
Merged-chr16-57423143-4	chr16	57422616	57423616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	PB1D11|SINE|Alu	69839.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	18.5	53.5	48.0	34.0	94.5	47.5
Merged-chr5-73548397-4	chr5	73547903	73548903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190733, intron 8 of 9)	intron (NM_001190733, intron 8 of 9)	57377.0	NM_178896	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	37.0	58.5	32.5	20.0	55.5	38.5
Merged-chr11-83665469-2	chr11	83664969	83665969	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013652)	TTS (NM_013652)	2885.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-31208355-4	chr7	31207869	31208869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	46011.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	12.0	52.5	30.5	14.5	75.0	50.0
Merged-chr17-35172649-4	chr17	35172150	35173150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001361501, exon 3 of 8)	5' UTR (NM_001361501, exon 3 of 8)	3402.0	NM_019467	11629.0	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132566873-2	chr4	132566373	132567373	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081211, intron 1 of 1)	intron (NM_001081211, intron 1 of 1)	2806.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-41708348-4	chr5	41707846	41708846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310589)	promoter-TSS (NM_001310589)	-167.0	NM_001310590	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	34.0	58.0	59.0	18.5	65.0	36.5
Merged-chr2-157077734-4	chr2	157077241	157078241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	1524.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-137413188-4	chr6	137412679	137413679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 13 of 26)	MTE2b|LTR|ERVL-MaLR	2458.0	NM_001164403	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-104225109-4	chr12	104224593	104225593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009251, intron 3 of 6)	intron (NM_009251, intron 3 of 6)	10460.0	NM_001033335	238393.0	Mm.483584	NM_001033335	ENSMUSG00000066363	Serpina3f	2A1|BC049975	serine (or cysteine) peptidase inhibitor, clade A, member 3F	protein-coding	33.0	146.5	83.5	25.5	108.0	62.0
Merged-chr9-45247168-2	chr9	45246668	45247668	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 4 of 4)	intron (NM_001198971, intron 4 of 4)	19539.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45020345-2	chr7	45019845	45020845	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009101, exon 3 of 6)	exon (NM_009101, exon 3 of 6)	748.0	NM_001360133	20130.0	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr1-55027528-4	chr1	55027037	55028037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031179)	promoter-TSS (NM_031179)	-59.0	NM_031179	81898.0	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	61.0	142.5	73.5	72.0	149.5	74.0
Merged-chr14-18238481-4	chr14	18237995	18238995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011584, intron 1 of 7)	CpG	611.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	48.5	67.0	75.0	30.5	91.0	49.0
Merged-chr7-13009943-4	chr7	13009426	13010426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024699)	promoter-TSS (NM_001024699)	-74.0	NM_001360833	232879.0	Mm.279272	NM_001024699	ENSMUSG00000049600	Zbtb45	BB161562|Gm157|Zfp499	zinc finger and BTB domain containing 45	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19136945-2	chr7	19136445	19137445	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175530, exon 2 of 2)	exon (NM_175530, exon 2 of 2)	12251.0	NM_026111	67369.0	Mm.234876	NM_026111	ENSMUSG00000030407	Qpctl	1810019P04Rik|BB101812|gQC	glutaminyl-peptide cyclotransferase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-89004056-2	chr11	89003572	89004572	+	1000.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_009546, intron 1 of 8)	intron (NM_009546, intron 1 of 8)	4669.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	36.5	100.5	66.0	35.5	85.0	75.5
Merged-chr2-114200340-4	chr2	114199825	114200825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175466, intron 1 of 1)	intron (NM_175466, intron 1 of 1)	1107.0	NM_175466	228491.0	Mm.132523	NM_175466	ENSMUSG00000040321	Zfp770	6430601A21Rik|Znf770	zinc finger protein 770	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87539904-2	chr6	87539404	87540404	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6645.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-49263435-5	chr6	49262950	49263950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362188, intron 1 of 8)	CpG	602.0	NM_001347209	101214.0	Mm.196598	NM_198102	ENSMUSG00000029817	Tra2a	1500010G04Rik|AL022798|G430041M01Rik|mAWMS1	transformer 2 alpha	protein-coding	157.5	446.5	332.0	170.0	348.0	310.5
Merged-chr16-92713991-4	chr16	92713500	92714500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-16671.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-53434882-4	chr10	53434376	53435376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24994.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29469245-2	chr19	29468745	29469745	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	intron (NM_021396, intron 5 of 5)	52742.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-36926077-4	chr19	36925556	36926556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080706)	promoter-TSS (NM_001080706)	-23.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120054999-4	chr9	120054515	120055515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009987, intron 1 of 1)	intron (NM_009987, intron 1 of 1)	13281.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	3.5	9.5	14.0	13.0	26.0	14.5
Merged-chr17-26503142-4	chr17	26502634	26503634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5338.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	37.5	79.5	103.0	33.0	101.5	98.0
Merged-chr17-84108151-4	chr17	84107646	84108646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29486.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-13955116-2	chr13	13954616	13955616	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362405, intron 1 of 12)	CpG	442.0	NM_178640	97884.0	Mm.21686	NM_178640	ENSMUSG00000039242	B3galnt2	A930105D20Rik|C80633|D230016N13Rik	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29212352-4	chr6	29211851	29212851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011829)	promoter-TSS (NM_011829)	-54.0	NM_011829	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63706520-4	chr9	63706000	63707000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	51494.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-93885293-4	chr11	93884812	93885812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134012)	promoter-TSS (NM_134012)	454.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	37.0	139.0	121.5	26.5	138.5	107.5
Merged-chr11-87470991-4	chr11	87470482	87471482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	CpG	43391.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-178324292-2	chr2	178323792	178324792	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177790, intron 8 of 12)	intron (NM_001177790, intron 8 of 12)	83366.0	NM_177191	320558.0	Mm.70781	NM_177191	ENSMUSG00000060445	Sycp2	3830402K23Rik|4930518F03Rik	synaptonemal complex protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113626623-4	chr5	113626122	113627122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	16981.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	2.0	4.0	5.5	3.5	2.5	5.0
Merged-chr4-132533665-4	chr4	132533158	132534158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007512, exon 2 of 4)	5' UTR (NM_007512, exon 2 of 4)	1756.0	NM_007512	11983.0	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34030009-2	chr17	34029509	34030509	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077709, intron 5 of 7)	intron (NM_001077709, intron 5 of 7)	1681.0	NM_001077709	14977.0	Mm.18556	NM_008202	ENSMUSG00000024327	Slc39a7	AA408174|AI117660|AL024048|H-2Ke4|H2-Ke4|Ke-4|Ke4|Ring5|Zip7	solute carrier family 39 (zinc transporter), member 7	protein-coding	2.0	15.0	13.5	0.0	14.5	7.5
Merged-chr7-30394615-4	chr7	30394196	30395196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19092.0	NM_011662	22177.0	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	105.0	194.5	134.0	80.0	185.0	101.0
Merged-chr7-140942525-2	chr7	140942025	140943025	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145387, exon 2 of 14)	exon (NM_145387, exon 2 of 14)	1134.0	NM_145387	212974.0	Mm.260139	NM_145387	ENSMUSG00000062031	Pgghg	5730511L01Rik|Athl1|BC023151	protein glucosylgalactosylhydroxylysine glucosidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-98601708-4	chr9	98601188	98602188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025485)	promoter-TSS (NM_025485)	-9.0	NM_025485	64655.0	Mm.17949	NM_025485	ENSMUSG00000032459	Mrps22	3100002P07Rik|Rpms22	mitochondrial ribosomal protein S22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10392891-4	chr17	10392400	10393400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63316.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6118520-4	chr19	6118016	6119016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133678)	promoter-TSS (NM_133678)	70.0	NM_133678	66406.0	Mm.303924	NM_133678	ENSMUSG00000024790	Sac3d1	2410004C24Rik|AU015683|shd1	SAC3 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70720797-4	chr11	70720320	70721320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153103, intron 18 of 22)	intron (NM_153103, intron 18 of 22)	14830.0	NR_105890	102465557.0		NR_105890	ENSMUSG00000105932	Mir6925	mmu-mir-6925	microRNA 6925	ncRNA	8.5	10.0	7.0	0.0	12.0	11.5
Merged-chr13-62964801-4	chr13	62964277	62965277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289924)	promoter-TSS (NM_001289924)	-116.0	NM_001289926	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	8.0	38.0	21.5	6.5	24.0	13.5
Merged-chr1-182045373-4	chr1	182044888	182045888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25408.0	NM_001083120	13800.0	Mm.87759	NM_008680	ENSMUSG00000022995	Enah	Mena|NDPP-1|Ndpp1|WBP8	ENAH actin regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29418076-4	chr19	29417577	29418577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 1 of 5)	intron (NM_021396, intron 1 of 5)	7158.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-74233977-3	chr16	74233478	74234478	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358493, intron 2 of 28)	MTD|LTR|ERVL-MaLR	108089.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.0	9.0	4.0	7.5	2.5	3.0
Merged-chr10-123197025-4	chr10	123196558	123197558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027604)	promoter-TSS (NM_027604)	-39.0	NM_001301628	14479.0	Mm.244209	NM_027604	ENSMUSG00000020124	Usp15	4921514G19Rik|AI327321|E430033I05Rik|Gcap18	ubiquitin specific peptidase 15	protein-coding	12.5	47.5	21.5	7.0	24.5	29.5
Merged-chr11-51809773-4	chr11	51809280	51810280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46117.0	NM_025535	66397.0	Mm.196592	NM_025535	ENSMUSG00000020386	Sar1b	2310075M17Rik|2900019I22Rik|CMRD|Sara1b|Sara2|Sarb	secretion associated Ras related GTPase 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21750569-4	chr14	21750063	21751063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026283)	promoter-TSS (NM_026283)	32.0	NM_001359954	67630.0	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	6.5	5.5	11.5	11.5	30.0	8.0
Merged-chr5-32135090-4	chr5	32134598	32135598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1374.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34898434-5	chr17	34897921	34898921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286573)	promoter-TSS (NM_001286573)	-71.0	NM_001286575	110147.0	Mm.35345	NM_145830	ENSMUSG00000013787	Ehmt2	Bat8|D17Ertd710e|G9a|KMT1C|NG36	euchromatic histone lysine N-methyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75696645-4	chr2	75696142	75697142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132727, intron 1 of 1)	intron (NR_132727, intron 1 of 1)	8021.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0.0	7.5	5.5	0.0	3.0	2.0
Merged-chr11-31870762-4	chr11	31870162	31871162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290676)	promoter-TSS (NM_001290676)	-278.0	NM_001290676	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	50.5	111.0	112.0	75.0	134.5	129.0
Merged-chr10-70245147-4	chr10	70244684	70245684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025807)	promoter-TSS (NM_025807)	-92.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-48817503-4	chr9	48817004	48818004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033324, intron 2 of 6)	intron (NM_001033324, intron 2 of 6)	18441.0	NM_001033324	235320.0	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding	8.0	26.0	25.0	9.5	21.5	29.5
Merged-chr7-136327285-4	chr7	136326817	136327817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22098.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-58116976-4	chr19	58116487	58117487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181415, intron 28 of 28)	intron (NM_181415, intron 28 of 28)	65820.0	NR_049196	100885835.0		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	104.0	116.0	67.5	79.5	145.5	147.0
Merged-chr10-40525955-4	chr10	40525437	40526437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44425.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148489494-4	chr5	148489000	148490000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	62173.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	16.5	2.0	3.5	3.5	7.5	10.5
Merged-chr17-48185436-4	chr17	48184935	48185935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-18178.0	NM_178796	328830.0	Mm.470939	NM_178796	ENSMUSG00000043939	A530064D06Rik	Trem4|pdctrem	RIKEN cDNA A530064D06 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131555320-4	chr1	131554823	131555823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27420.0	NM_175382	108900.0	Mm.31278	NM_175382	ENSMUSG00000055184	Fam72a	2700049P18Rik|P17	family with sequence similarity 72, member A	protein-coding	5.5	25.5	10.0	5.5	30.5	10.5
Merged-chr2-160242379-2	chr2	160241879	160242879	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85115.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19559941-4	chr10	19559448	19560448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32001.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	54.0	170.0	108.5	88.5	160.5	90.5
Merged-chr2-167378350-2	chr2	167377850	167378850	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29172.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-4734291-4	chr15	4733780	4734780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016704, intron 3 of 15)	intron (NM_016704, intron 3 of 15)	7070.0	NM_016704	12274.0	Mm.20247	NM_016704	ENSMUSG00000022181	C6	AW111623	complement component 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90323437-4	chr3	90322951	90323951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18203.0	NM_139304	229542.0	Mm.270999	NM_139304	ENSMUSG00000042390	Gatad2b	AL118180|C430014D17Rik|P66beta|mKIAA1150	GATA zinc finger domain containing 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109608515-4	chr8	109608001	109609001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_020046, exon 1 of 9)	5' UTR (NM_020046, exon 1 of 9)	172.0	NM_020046	56749.0	Mm.23894	NM_020046	ENSMUSG00000031730	Dhodh	2810417D19Rik|AI834883	dihydroorotate dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98762275-4	chr15	98761789	98762789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007478, intron 1 of 4)	intron (NM_007478, intron 1 of 4)	703.0	NM_001355510	11842.0	Mm.221298	NM_007478	ENSMUSG00000051853	Arf3	5430400P17Rik|AI854770	ADP-ribosylation factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110880211-4	chr9	110879735	110880735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146228)	promoter-TSS (NM_146228)	61.0	NM_001146059	235633.0	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	0.5	0.0	1.0	0.5	0.0	1.0
Merged-chr2-102899861-2	chr2	102899369	102900369	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	1796.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	158.0	330.0	161.0	100.0	299.5	157.5
Merged-chr11-115004249-4	chr11	115003751	115004751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2371.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32562621-4	chr9	32562139	32563139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21187.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77970647-4	chr10	77970129	77971129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138301)	promoter-TSS (NM_138301)	-757.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-131387734-4	chr6	131387244	131388244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011733, intron 1 of 8)	intron (NM_011733, intron 1 of 8)	706.0	NM_139117	56449.0	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	5.0	6.5	1.0	0.0	1.5	0.5
Merged-chr12-85599318-4	chr12	85598820	85599820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030887)	promoter-TSS (NM_030887)	-96.0	NM_030887	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116487019-4	chr6	116486532	116487532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-6579.0	NM_146912	258914.0	Mm.391507	NM_146912	ENSMUSG00000053391	Olfr211	MOR253-9	olfactory receptor 211	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122234427-2	chr2	122233928	122234928	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146126)	promoter-TSS (NM_146126)	-411.0	NM_146126	20322.0	Mm.371580	NM_146126	ENSMUSG00000027227	Sord	Sdh-1|Sdh1|Sodh-1	sorbitol dehydrogenase	protein-coding	6.0	23.5	7.0	7.5	8.5	5.0
Merged-chr16-55820690-4	chr16	55820190	55821190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159395, intron 2 of 12)	intron (NM_001159395, intron 2 of 12)	1448.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64142154-1	chr7	64141654	64142654	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-11681.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55866433-4	chr19	55865923	55866923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-28898.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53227767-4	chr18	53227240	53228240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17922.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	4.5	50.0	31.5	3.5	23.5	16.5
Merged-chr4-41755531-4	chr4	41755038	41756038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302511)	promoter-TSS (NM_001302511)	234.0	NR_155499	105247116.0	Mm.488220	NR_155499		Gm42274	-	predicted gene, 42274	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117027341-4	chr2	117026846	117027846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93725.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167741797-2	chr2	167741297	167742297	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50620.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41810481-4	chr10	41809973	41810973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243075)	promoter-TSS (NM_001243075)	-101.0	NM_001162908	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92459642-1	chr16	92459142	92460142	+	1000.0	f1_balb.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	6527.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54876897-6	chr14	54876457	54877457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001167908, exon 1 of 2)	exon (NM_001167908, exon 1 of 2)	581.0	NM_001167908	105651.0	Mm.297365	NM_001167908	ENSMUSG00000072494	Ppp1r3e	A630071A11Rik|AW049239|Gm1211	protein phosphatase 1, regulatory (inhibitor) subunit 3E	protein-coding	0.0	25.5	18.0	0.5	7.0	1.0
Merged-chr12-117476772-4	chr12	117476264	117477264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MARNA|DNA|TcMar-Mariner	-39715.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	1.0	3.0	0.0	0.0	4.5	3.0
Merged-chr7-102247153-4	chr7	102246648	102247648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	2970.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	15.0	39.5	10.5	17.0	18.5	17.5
Merged-chr1-151755179-4	chr1	151754679	151755679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151473)	promoter-TSS (NR_151473)	-161.0	NR_151473	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122557897-4	chr8	122557398	122558398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-6569.0	NM_001357349	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	38.5	141.0	145.5	39.0	162.5	102.5
Merged-chr1-91498808-4	chr1	91498305	91499305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028718, intron 2 of 14)	PB1D10|SINE|Alu	4137.0	NM_028718	74019.0	Mm.318430	NM_028718	ENSMUSG00000034292	Traf3ip1	3930402D05Rik|AU041749|MIP-T3	TRAF3 interacting protein 1	protein-coding	1.5	9.5	3.5	7.0	21.0	11.5
Merged-chr19-44284283-4	chr19	44283778	44284778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9398.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	22.0	33.5	35.0	20.0	40.5	51.0
Merged-chr10-128411620-4	chr10	128411104	128412104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104288)	promoter-TSS (NR_104288)	-12.0	NR_104288	67588.0	Mm.294120	NM_026259	ENSMUSG00000025373	Rnf41	2210404G21Rik|4930511A05Rik|4933415P08Rik|D10Ertd722e|FLRF|Nrdp1	ring finger protein 41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170252727-6	chr2	170252194	170253194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103667.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108840650-4	chr3	108840182	108841182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011504)	promoter-TSS (NM_011504)	-180.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9392797-4	chr18	9392294	9393294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026484, intron 1 of 9)	intron (NM_026484, intron 1 of 9)	57360.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	9.5	12.0	26.0	19.5	25.0	15.5
Merged-chr11-72301593-4	chr11	72301110	72302110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037713)	promoter-TSS (NM_001037713)	-19.0	NM_001291153	327959.0	Mm.291131	NM_001037713	ENSMUSG00000040483	Xaf1	Fbox39	XIAP associated factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81401891-4	chr10	81401395	81402395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 8 of 8)	intron (NM_026756, intron 8 of 8)	-7680.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80325684-2	chr10	80325184	80326184	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008793, intron 5 of 14)	intron (NM_008793, intron 5 of 14)	3789.0	NM_008793	18551.0	Mm.299916	NM_008793	ENSMUSG00000020131	Pcsk4	AI647044|L21221|NEC 3|NEC3|PC4|SPC5	proprotein convertase subtilisin/kexin type 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25269844-4	chr15	25269350	25270350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143914.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146172444-4	chr6	146171918	146172918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 50 of 56)	intron (NM_019923, intron 50 of 56)	238296.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-137410680-4	chr6	137410168	137411168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164403)	promoter-TSS (NM_001164403)	-53.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-11178973-3	chr12	11178534	11179534	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25468.0	NR_131084	77442.0	Mm.159922	NR_131083	ENSMUSG00000112041	9530020I12Rik	-	RIKEN cDNA 9530020I12 gene	ncRNA	0.0	0.0	2.0	0.0	4.0	1.0
Merged-chr16-15863397-4	chr16	15862910	15863910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029354)	promoter-TSS (NM_029354)	-41.0	NM_001359003	72083.0	Mm.22351	NM_029354	ENSMUSG00000022671	Mzt2	2410018G20Rik|2610001E06Rik|Fam128|Fam128b	mitotic spindle organizing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-57117757-4	chr2	57117249	57118249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139509, intron 1 of 7)	intron (NM_001139509, intron 1 of 7)	-2711.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35090970-2	chr17	35090485	35091485	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178592, intron 2 of 19)	intron (NM_178592, intron 2 of 19)	1694.0	NM_178592	193742.0	Mm.43745	NM_178592	ENSMUSG00000007036	Abhd16a	AI326074|Bat-5|Bat5|D17H6S82E|NG26	abhydrolase domain containing 16A	protein-coding	7.0	4.5	4.0	0.0	3.5	4.5
Merged-chr4-156200876-4	chr4	156200392	156201392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015783)	promoter-TSS (NM_015783)	-74.0	NM_015783	100038882.0	Mm.4950	NM_015783	ENSMUSG00000035692	Isg15	G1p2|IGI15|IP17|Irfp|UCRP	ISG15 ubiquitin-like modifier	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66975423-4	chr9	66974924	66975924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030717)	promoter-TSS (NM_030717)	60.0	NM_030717	80907.0	Mm.157882	NM_030717	ENSMUSG00000032370	Lactb	LACT-1|Lact1|Mrpl56	lactamase, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24038401-4	chr5	24037892	24038892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7702.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	41.0	141.0	102.0	28.5	54.0	71.5
Merged-chr9-114805338-4	chr9	114804816	114805816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027294, intron 1 of 3)	intron (NM_027294, intron 1 of 3)	-23323.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	16.0	7.0	2.5	6.0	8.0	14.0
Merged-chr8-22411355-4	chr8	22410856	22411856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020560)	promoter-TSS (NM_020560)	16.0	NM_020560	57312.0	Mm.289402	NM_020560	ENSMUSG00000031533	Mrps31	1500002D03Rik|AA960481|Imogen38|Imogen44	mitochondrial ribosomal protein S31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-99929890-4	chr4	99929375	99930375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028132, intron 1 of 10)	CpG	424.0	NM_028132	72157.0	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115321546-4	chr6	115321031	115322031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-39420.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-93243281-4	chr13	93242790	93243790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-50873.0	NM_001361537	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	4.5	11.0	9.5	3.0	4.5	6.0
Merged-chr2-30707495-4	chr2	30706996	30707996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13714.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129397005-4	chr6	129396492	129397492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204239)	promoter-TSS (NM_001204239)	-305.0	NM_001204253	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87525587-4	chr3	87525055	87526055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012051)	promoter-TSS (NM_012051)	-23.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	88.5	209.0	167.5	111.0	238.5	200.0
Merged-chr9-44231150-4	chr9	44230631	44231631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 1 of 15)	intron (NM_007619, intron 1 of 15)	2915.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	24.5	109.5	75.5	40.5	100.0	62.0
Merged-chr4-155568273-4	chr4	155567761	155568761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355599, intron 1 of 10)	B1_Mur1|SINE|Alu	4446.0	NM_001355599	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117019340-4	chr2	117018822	117019822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101749.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	72.5	193.5	107.0	70.0	184.0	104.5
Merged-chr11-80087026-4	chr11	80086550	80087550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2350.0	NM_001029856	237877.0	Mm.89551	NM_001029856	ENSMUSG00000017550	Atad5	C130052G03Rik|FRAG1|Gm17	ATPase family, AAA domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143600156-4	chr7	143599660	143600660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013742)	promoter-TSS (NM_013742)	-70.0	NM_013742	27267.0	Mm.125659	NM_013742	ENSMUSG00000010755	Cars	CA3	cysteinyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102025447-4	chr7	102024943	102025943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 6 of 8)	intron (NM_029211, intron 6 of 8)	-7288.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106321610-4	chr1	106321111	106322111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 4 of 16)	intron (NM_133821, intron 4 of 16)	149742.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180778329-4	chr1	180777839	180778839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	35266.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116311565-2	chr6	116311065	116312065	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290338, intron 5 of 8)	ORR1C1|LTR|ERVL-MaLR	-26457.0	NM_027920	71779.0	Mm.27064	NM_027920	ENSMUSG00000025702	March8	1300017E09Rik|MARCH-VIII|Mir	membrane-associated ring finger (C3HC4) 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34485952-4	chr1	34485378	34486378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12534.0	NM_009355	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-109261993-4	chr13	109261504	109262504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-62740.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17065101-3	chr6	17064630	17065630	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207176)	promoter-TSS (NM_207176)	-19.0	NM_207176	21753.0	Mm.436548	NM_011570	ENSMUSG00000029552	Tes	D6Ertd352e|TESS|Tes1|Tes2|testin2	testis derived transcript	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-28727284-4	chr12	28726802	28727802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161410, intron 3 of 11)	intron (NM_001161410, intron 3 of 11)	23092.0	NM_001161410	217449.0	Mm.132006	NM_178811	ENSMUSG00000020628	Trappc12	CGI-87|D930014A20Rik|Ttc15	trafficking protein particle complex 12	protein-coding	53.0	66.0	49.5	41.0	36.5	33.0
Merged-chr15-58823629-4	chr15	58823134	58824134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175212)	promoter-TSS (NM_175212)	-207.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-72664827-4	chr12	72664327	72665327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025522)	promoter-TSS (NM_025522)	1.0	NM_025522	66375.0	Mm.289653	NM_025522	ENSMUSG00000021094	Dhrs7	2310016E22Rik|5730564L20Rik|AW061210|Retdsr4|Retsdr4	dehydrogenase/reductase (SDR family) member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120815830-4	chr4	120815353	120816353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357192)	promoter-TSS (NM_001357192)	-140.0	NM_001357192	18046.0	Mm.318389	NM_008692	ENSMUSG00000032897	Nfyc	-	nuclear transcription factor-Y gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72512656-4	chr6	72512196	72513196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31695.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91719279-4	chr12	91718788	91719788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 3 of 6)	MTD|LTR|ERVL-MaLR	67148.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121171690-4	chr3	121171180	121172180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025637)	promoter-TSS (NM_025637)	15.0	NM_028456	66568.0	Mm.263163	NM_025637	ENSMUSG00000028133	Rwdd3	2510027J23Rik|3110037C01Rik|AI035684|AI662458|Rsume|X2CR1	RWD domain containing 3	protein-coding	33.5	17.0	31.5	22.5	31.5	29.5
Merged-chr11-24185135-4	chr11	24184641	24185641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	104446.0	NM_001159290	14025.0	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0.0	1.0	1.0	2.5	0.0	5.0
Merged-chr19-53314318-4	chr19	53313842	53314842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	CpG	2897.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163472642-4	chr2	163472137	163473137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028122)	promoter-TSS (NR_028122)	-8.0	NM_173397	228859.0	Mm.242917	NM_173397	ENSMUSG00000048486	Fitm2	AI414861|D930001I22Rik|Fit2	fat storage-inducing transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-52366160-2	chr11	52365660	52366660	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011694, intron 1 of 8)	intron (NM_011694, intron 1 of 8)	5298.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63758168-4	chr9	63757671	63758671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016769)	promoter-TSS (NM_016769)	-177.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105654832-4	chr5	105654314	105655314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45155.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	11.5	7.5	6.5	17.0	42.0	30.5
Merged-chr7-19001266-4	chr7	19000758	19001758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145579, exon 3 of 3)	3' UTR (NM_145579, exon 3 of 3)	-2807.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53746828-3	chr18	53746328	53747328	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2281.0	NM_178686	225523.0	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding	7.5	13.5	9.0	29.5	59.0	44.0
Merged-chr8-34965761-4	chr8	34965258	34966258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175091)	promoter-TSS (NM_175091)	-68.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	2.0	2.0	0.0	1.5	2.5	0.0
Merged-chr8-41004259-2	chr8	41003759	41004759	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 7 of 13)	intron (NM_001005863, intron 7 of 13)	-13209.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	72.5	213.0	189.5	35.5	79.5	64.0
Merged-chr2-9965799-4	chr2	9965304	9966304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027748, intron 2 of 6)	ORR1A2|LTR|ERVL-MaLR	59655.0	NR_152218	100126244.0	Mm.86343	NR_152218		Gm13262	-	predicted gene 13262	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34389768-4	chr1	34389274	34390274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43425.0	NR_039562	100628580.0		NR_039562	ENSMUSG00000092852	Mir5103	mir-5103|mmu-mir-5103|mu-mir-5103	microRNA 5103	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94365719-4	chr8	94365195	94366195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019415, intron 24 of 24)	intron (NM_019415, intron 24 of 24)	-20734.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30407392-4	chr14	30406903	30407903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028981, intron 1 of 46)	intron (NM_028981, intron 1 of 46)	-50633.0	NR_131095	77710.0	Mm.410773	NR_131095		4831407H17Rik	-	RIKEN cDNA 4831407H17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34587533-4	chr17	34586978	34587978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010929, exon 30 of 30)	exon (NM_010929, exon 30 of 30)	-2328.0	NM_134116	106512.0	Mm.26584	NM_134116	ENSMUSG00000034786	Gpsm3	AA960287|AGS4	G-protein signalling modulator 3 (AGS3-like, C. elegans)	protein-coding	4.0	6.5	11.5	1.5	3.0	3.0
Merged-chr4-63553942-4	chr4	63553445	63554445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4818.0	NM_001356355	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-11399800-4	chr15	11399300	11400300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033074)	promoter-TSS (NM_033074)	-142.0	NM_033074	110960.0	Mm.286061	NM_033074	ENSMUSG00000022241	Tars	D15Wsu59e|ThrRS	threonyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133813571-5	chr4	133813048	133814048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-59937.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	33.0	103.0	48.5	24.5	131.5	65.0
Merged-chr17-45119283-2	chr17	45118783	45119783	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357320)	TTS (NM_001357320)	-238398.0	NM_029257	75341.0	Mm.386821	NM_029257		4930564C03Rik	-	RIKEN cDNA 4930564C03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105967214-1	chr1	105966714	105967714	+	1000.0	f1_balb.idr	Intergenic	Lx9|LINE|L1	23068.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	18.5	69.5	27.0	129.0	259.0	125.0
Merged-chr4-8667340-4	chr4	8666855	8667855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23051.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123059303-1	chr5	123058803	123059803	+	1000.0	f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-12287.0	NM_001347456	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	9.5	6.0	10.0	28.5	20.5	20.5
Merged-chr17-27520729-2	chr17	27520229	27521229	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-17196.0	NM_001291045	268934.0	Mm.358940	NM_001013385	ENSMUSG00000063239	Grm4	Gprc1d|mGluR4	glutamate receptor, metabotropic 4	protein-coding	0.0	0.0	0.0	0.5	0.0	0.5
Merged-chr11-80177407-4	chr11	80176907	80177907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 10 of 10)	intron (NM_172133, intron 10 of 10)	-6465.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30781936-2	chr7	30781436	30782436	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028618)	TTS (NM_028618)	5531.0	NM_028618	73712.0	Mm.30138	NM_028618	ENSMUSG00000060962	Dmkn	1110014F24Rik|AW561900|C130074A08|SK30|SK89|cI-36	dermokine	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29264541-4	chr6	29264051	29265051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7937.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17294364-4	chr17	17293858	17294858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324550)	promoter-TSS (NM_001324550)	-85.0	NM_001324550	100862203.0	Mm.484235	NM_001324550		Gm6712	EG626854	predicted gene 6712	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6740164-4	chr2	6739652	6740652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 3 of 15)	intron (NM_001110232, intron 3 of 15)	-18490.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70353354-4	chr8	70352843	70353843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122829)	promoter-TSS (NM_001122829)	-64.0	NM_001122829	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	23.0	107.0	94.5	50.5	145.5	115.5
Merged-chr16-91734965-4	chr16	91734461	91735461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	Lx8|LINE|L1	5590.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	2.5	4.5	7.5	5.5	19.5	10.0
Merged-chr6-31065108-2	chr6	31064608	31065608	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2015.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27317047-4	chr3	27316534	27317534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009425)	promoter-TSS (NM_009425)	-43.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20919808-4	chr10	20919309	20920309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B2|LTR|ERVK	-32738.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	1.0	4.0	9.0	0.5	11.0	16.5
Merged-chr2-38286113-4	chr2	38285617	38286617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146122, intron 1 of 21)	intron (NM_146122, intron 1 of 21)	1267.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166459141-4	chr2	166458645	166459645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_015558)	TTS (NR_015558)	11694.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61175255-4	chr11	61174754	61175754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004143)	promoter-TSS (NM_001004143)	-195.0	NM_001004143	216825.0	Mm.30602	NM_001004143	ENSMUSG00000042506	Usp22	AI427806	ubiquitin specific peptidase 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19934250-2	chr10	19933750	19934750	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008580)	promoter-TSS (NM_008580)	-276.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	10.0	5.5	15.5	10.0	5.5	15.5
Merged-chr10-61695486-4	chr10	61695008	61696008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001272090)	promoter-TSS (NM_001272090)	-6.0	NM_001272090	71767.0	Mm.71514	NM_027912	ENSMUSG00000020087	Tysnd1	1300019N10Rik	trypsin domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55429478-4	chr13	55428978	55429978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2674.0	NM_021489	58992.0	Mm.42224	NM_021489	ENSMUSG00000021492	F12	FXII|HAF	coagulation factor XII (Hageman factor)	protein-coding	49.5	119.5	55.5	41.5	103.5	97.5
Merged-chr11-51756564-4	chr11	51756070	51757070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175255, exon 1 of 23)	5' UTR (NM_175255, exon 1 of 23)	264.0	NM_001290785	77371.0	Mm.33878	NM_175255	ENSMUSG00000036391	Sec24a	-	Sec24 related gene family, member A (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-54932121-2	chr15	54931621	54932621	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11975.0	NM_001285994	18606.0	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59887978-4	chr15	59887387	59888387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92928.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	12.0	21.5	8.0	12.0	21.5	8.0
Merged-chr3-98066647-4	chr3	98066161	98067161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 2 of 33)	B3|SINE|B2	53123.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126583818-2	chr8	126583318	126584318	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9618.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	17.0	63.0	27.0	17.0	43.0	34.0
Merged-chr17-56065908-2	chr17	56065408	56066408	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013733, intron 13 of 13)	B2_Mm1t|SINE|B2	13425.0	NM_024432	66530.0	Mm.28000	NM_024432	ENSMUSG00000019578	Ubxn6	1200008L11Rik|2210415J11Rik|AU040909|Ubxd1|Ubxdc2	UBX domain protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128194364-4	chr10	128193864	128194864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285779)	promoter-TSS (NM_001285779)	-271.0	NM_001285777	216456.0	Mm.30102	NM_001033264	ENSMUSG00000044005	Gls2	A330074B06Rik|AI195532|GA|GLS|Lga	glutaminase 2 (liver, mitochondrial)	protein-coding	2.5	0.0	0.0	0.0	9.0	0.5
Merged-chr9-121331634-2	chr9	121331134	121332134	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	L1M4|LINE|L1	34132.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72552892-4	chr6	72552384	72553384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271395, intron 1 of 9)	intron (NM_001271395, intron 1 of 9)	3237.0	NM_001271395	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-35728506-4	chr5	35728029	35729029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359895, intron 1 of 17)	intron (NM_001359895, intron 1 of 17)	747.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30516573-4	chr5	30516078	30517078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028483, intron 3 of 6)	intron (NM_028483, intron 3 of 6)	29258.0	NM_028483	73259.0	Mm.443299	NM_028483	ENSMUSG00000053194	Cib4	1700041E20Rik	calcium and integrin binding family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59648499-4	chr15	59647968	59648968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144549)	promoter-TSS (NM_144549)	-186.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21421786-4	chr11	21421264	21422264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50497.0	NM_001290634	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	6.5	0.0	7.5	3.0	6.5	3.0
Merged-chr1-184480829-4	chr1	184480338	184481338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76853.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24638137-4	chr10	24637632	24638632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008813, exon 25 of 25)	3' UTR (NM_008813, exon 25 of 25)	42690.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128804481-4	chr10	128803959	128804959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178066)	promoter-TSS (NM_178066)	-12.0	NM_178066	73827.0	Mm.24630	NM_178066	ENSMUSG00000047090	Tmem198b	1110012D08Rik	transmembrane protein 198b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33370703-2	chr2	33370203	33371203	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290570, intron 1 of 16)	intron (NM_001290570, intron 1 of 16)	791.0	NM_001290570	241308.0	Mm.274249	NM_175211	ENSMUSG00000038831	Ralgps1	5830418G11Rik|AI853783|AI854138|RALGEF2|RALGPS1A|RalGEF 2|mKIAA0351	Ral GEF with PH domain and SH3 binding motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119813187-4	chr8	119812689	119813689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 3 of 3)	intron (NM_028071, intron 3 of 3)	27390.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68844295-2	chr10	68843795	68844795	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	120549.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123376796-4	chr5	123376295	123377295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18003.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	64.0	109.5	64.5	60.5	108.5	65.0
Merged-chr10-20834734-4	chr10	20834240	20835240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5|LINE|L1	-109662.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	13.0	27.5	7.5	6.5	6.5	18.0
Merged-chr7-28372839-4	chr7	28372338	28373338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083912)	promoter-TSS (NM_001083912)	-176.0	NM_001083912	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-54494981-1	chr4	54494481	54495481	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-452964.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	0.0	3.0	0.0	7.0	10.5	6.0
Merged-chr12-65074009-4	chr12	65073403	65074403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013902)	promoter-TSS (NM_013902)	35.0	NM_013902	30795.0	Mm.28480	NM_013902	ENSMUSG00000020949	Fkbp3	25kDa|FKBP-3|FKBP25	FK506 binding protein 3	protein-coding	5.5	16.5	10.5	3.5	17.5	10.0
Merged-chr11-5100055-4	chr11	5099562	5100562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001283063)	promoter-TSS (NM_001283063)	-103.0	NM_001290493	279766.0	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36179711-4	chr15	36179179	36180179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_012031, exon 1 of 19)	5' UTR (NM_012031, exon 1 of 19)	149.0	NM_012031	26942.0	Mm.295539	NM_012031	ENSMUSG00000037617	Spag1	tpis	sperm associated antigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120277198-4	chr14	120276699	120277699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	1530.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35979679-4	chr17	35979247	35980247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165892)	promoter-TSS (NM_001165892)	78.0	NM_001282013	75210.0	Mm.40036	NM_145487	ENSMUSG00000038500	Prr3	4930540G07Rik|Cat56	proline-rich polypeptide 3	protein-coding	40.0	95.5	88.5	35.5	101.5	83.5
Merged-chr17-45433703-4	chr17	45433215	45434215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152810)	promoter-TSS (NM_152810)	-8.0	NM_152810	71702.0	Mm.28270	NM_152810	ENSMUSG00000023932	Cdc5l	1200002I02Rik|AA408004|PCDC5RP	cell division cycle 5-like (S. pombe)	protein-coding	10.0	23.0	19.0	7.0	16.0	25.5
Merged-chr8-69919211-4	chr8	69918716	69919716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 3 of 12)	intron (NM_001286450, intron 3 of 12)	-16658.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	10.5	23.0	13.5	5.0	23.0	12.5
Merged-chr11-97745008-7	chr11	97744513	97745513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054051)	promoter-TSS (NM_054051)	116.0	NR_106180	102466256.0		NR_106180	ENSMUSG00000098919	Mir8102	Gm27795|mmu-mir-8102	microRNA 8102	ncRNA	38.5	62.0	73.0	16.5	42.5	43.5
Merged-chr15-35296483-2	chr15	35295983	35296983	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054049, intron 1 of 3)	CpG	371.0	NM_054049	107587.0	Mm.46336	NM_054049	ENSMUSG00000022330	Osr2	5430409I15Rik|Osr2A|Osr2B	odd-skipped related 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-18800610-4	chr13	18800116	18801116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 7 of 28)	intron (NM_172120, intron 7 of 28)	83324.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	22.5	39.5	63.5	22.5	61.0	47.0
Merged-chr19-8929492-4	chr19	8929006	8930006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009073)	promoter-TSS (NM_009073)	-150.0	NM_009073	19881.0	Mm.426094	NM_009073	ENSMUSG00000071648	Rom1	M101156|Rgsc1156|Rom-1|Rosp1|Tspan23	rod outer segment membrane protein 1	protein-coding	15.0	34.0	40.5	15.0	32.0	40.5
Merged-chr13-104288650-2	chr13	104288150	104289150	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_136938, intron 1 of 26)	intron (NR_136938, intron 1 of 26)	815.0	NM_001081020	108154.0	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164679346-4	chr2	164678847	164679847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5260.0	NM_001161806	629761.0	Mm.389336	NM_001161806	ENSMUSG00000078940	Wfdc11	-	WAP four-disulfide core domain 11	protein-coding	33.5	62.5	71.0	16.0	52.5	44.0
Merged-chr5-28037799-4	chr5	28037310	28038310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33602.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120265399-4	chr1	120264889	120265889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133186)	promoter-TSS (NM_133186)	-109.0	NM_133186	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	11.0	12.5	14.0	14.0	16.5	16.0
Merged-chr3-51708798-4	chr3	51708274	51709274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	47595.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-80067623-5	chr9	80067152	80068152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311110, intron 1 of 23)	CpG	749.0	NM_146003	215351.0	Mm.28232	NM_146003	ENSMUSG00000034252	Senp6	2810017C20Rik|E130319N12Rik|Susp1|mKIAA0797	SUMO/sentrin specific peptidase 6	protein-coding	14.5	65.5	32.5	25.5	36.5	34.5
Merged-chr2-126152078-4	chr2	126151582	126152582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026981)	promoter-TSS (NM_026981)	-59.0	NM_001355583	69185.0	Mm.29019	NM_026981	ENSMUSG00000023330	Dtwd1	1810033A06Rik	DTW domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119378417-2	chr9	119377917	119378917	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359699, intron 9 of 17)	(CA)n|Simple_repeat|Simple_repeat	21036.0	NM_001359699	102448.0	Mm.219497	NM_001033209	ENSMUSG00000035769	Xylb	AI132223|AI327421	xylulokinase homolog (H. influenzae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71390122-4	chr2	71389605	71390605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026115, intron 2 of 10)	intron (NM_026115, intron 2 of 10)	845.0	NM_026115	107435.0	Mm.272472	NM_026115	ENSMUSG00000027018	Hat1	2410071B14Rik|AA536933|Hat-1|KAT1	histone aminotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-33303142-4	chr12	33302624	33303624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033436, intron 1 of 7)	intron (NM_001033436, intron 1 of 7)	609.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	43.5	74.5	47.0	39.5	56.5	54.5
Merged-chr16-88487952-4	chr16	88487451	88488451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19027.0	NM_181490	239931.0	Mm.126860	NM_181490	ENSMUSG00000055811	Cldn17	-	claudin 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95808103-4	chr8	95807616	95808616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178078)	promoter-TSS (NM_178078)	-654.0	NM_001205226	234594.0	Mm.259220	NM_153164	ENSMUSG00000036550	Cnot1	6030411K04Rik|AA815922|D830048B13	CCR4-NOT transcription complex, subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116018274-4	chr11	116017726	116018726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5507.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32283506-4	chr17	32282998	32283998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286630, intron 1 of 19)	intron (NM_001286630, intron 1 of 19)	625.0	NM_198094	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88123891-4	chr17	88123407	88124407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-1605.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85702343-2	chr12	85701843	85702843	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016767, intron 2 of 2)	intron (NM_016767, intron 2 of 2)	15623.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-51667372-2	chr12	51666872	51667872	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172098, intron 1 of 15)	intron (NM_001172098, intron 1 of 15)	-23594.0	NM_001329699	11782.0	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96219776-4	chr3	96219275	96220275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178213)	promoter-TSS (NM_178213)	-141.0	NM_178213	621893.0		NM_178213	ENSMUSG00000063689	Hist2h2ab	EG621893|H2a-613a	histone cluster 2, H2ab	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-94588174-4	chr3	94587677	94588677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-5461.0	NM_029721	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	11.5	55.0	47.0	18.0	70.0	34.5
Merged-chr17-4908397-4	chr17	4907902	4908902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-86672.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106140986-4	chr8	106140469	106141469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3995.0	NM_176838	77411.0	Mm.183003	NM_176838	ENSMUSG00000084128	Esrp2	9530027K23Rik|Rbm35b	epithelial splicing regulatory protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-54132845-4	chr10	54132332	54133332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56910.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83037040-2	chr15	83036540	83037540	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3643.0	NM_001271411	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12322044-4	chr15	12321582	12322582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025673, intron 1 of 3)	CpG	586.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-20817391-3	chr1	20816915	20817915	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008563, exon 3 of 17)	exon (NM_008563, exon 3 of 17)	2897.0	NM_008563	17215.0	Mm.4502	NM_008563	ENSMUSG00000041859	Mcm3	AL033361|C80350|Mcmd|P1|P1-MCM3|p1.m	minichromosome maintenance complex component 3	protein-coding	22.0	29.5	31.5	36.5	23.0	30.5
Merged-chr1-91540542-4	chr1	91540054	91541054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039126)	promoter-TSS (NM_001039126)	-11.0	NM_001039126	65247.0	Mm.234152	NM_023046	ENSMUSG00000026311	Asb1	1700029O08Rik|1700054C17Rik|AI426616|AI851378|mKIAA1146	ankyrin repeat and SOCS box-containing 1	protein-coding	5.5	6.5	4.0	3.5	10.0	1.0
Merged-chr9-15279969-4	chr9	15279478	15280478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144933)	promoter-TSS (NM_144933)	-111.0	NM_144933	234959.0	Mm.44151	NM_144933	ENSMUSG00000031935	Med17	77kDa|C330002H14Rik|Crsp6|Trap80	mediator complex subunit 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-136230828-4	chr3	136230322	136231322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 6 of 16)	intron (NM_001033350, intron 6 of 16)	95244.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	1.5	4.5	8.0	18.0	9.0	4.5
Merged-chr10-128096849-4	chr10	128096358	128097358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054078, intron 2 of 29)	CpG	4075.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180710102-4	chr2	180709621	180710621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177852)	promoter-TSS (NM_177852)	-105.0	NM_001289652	76425.0	Mm.41464	NM_029607	ENSMUSG00000027573	Gid8	2310003C23Rik|4833420G11Rik|AI451474|Twa1	GID complex subunit 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-24100433-4	chr1	24099930	24100930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026604)	promoter-TSS (NM_026604)	-89.0	NM_026604	68187.0	Mm.87130	NM_026604	ENSMUSG00000026153	Fam135a	4921533L14Rik|AI256732|AI835491	family with sequence similarity 135, member A	protein-coding	2.5	10.0	3.5	8.0	28.0	12.0
Merged-chr5-63827181-4	chr5	63826677	63827677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	14682.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	46.0	203.5	137.0	74.5	162.0	132.5
Merged-chr2-77281211-4	chr2	77280739	77281739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175465)	promoter-TSS (NM_175465)	-647.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-21205709-4	chr2	21205219	21206219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027728)	promoter-TSS (NM_027728)	-5.0	NM_001001297	208967.0	Mm.268841	NM_177588	ENSMUSG00000048550	Thnsl1	AW413632	threonine synthase-like 1 (bacterial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128719507-4	chr2	128719021	128720021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	20606.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	62.0	128.0	63.0	35.5	96.0	53.0
Merged-chr18-39251097-4	chr18	39250574	39251574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 17 of 21)	intron (NM_001361073, intron 17 of 21)	236171.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55100223-4	chr13	55099645	55100645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293660, intron 1 of 12)	CpG	155.0	NR_121592	20184.0	Mm.259301	NM_011307	ENSMUSG00000025878	Uimc1	9430016E08Rik|D330018D10Rik|D630032M02Rik|RIP110|Rxrip110	ubiquitin interaction motif containing 1	protein-coding	3.0	8.0	5.0	3.5	20.5	4.5
Merged-chr6-53589943-4	chr6	53589392	53590392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172728, intron 1 of 6)	intron (NM_172728, intron 1 of 6)	16518.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	26.5	51.0	19.5	32.0	34.0	37.0
Merged-chr4-156198063-4	chr4	156197591	156198591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021604)	promoter-TSS (NM_021604)	-603.0	NM_021604	11603.0	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120037098-4	chr6	120036611	120037611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001199083, exon 1 of 28)	exon (NM_001199083, exon 1 of 28)	1544.0	NM_001185020	232341.0	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-87830191-4	chr10	87829723	87830723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G1|LTR|ERVL-MaLR	-28042.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101968105-4	chr5	101967610	101968610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 5 of 66)	MTD|LTR|ERVL-MaLR	101811.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	214.0	579.5	385.5	197.0	479.0	343.5
Merged-chr17-67346589-2	chr17	67346089	67347089	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	7870.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154944397-4	chr4	154943885	154944885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16308.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	54.5	147.0	101.0	97.5	248.5	184.0
Merged-chr5-19896053-4	chr5	19895569	19896569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 2 of 22)	MTD|LTR|ERVL-MaLR	-11449.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-93341884-2	chr4	93341384	93342384	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6373.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	5.5	1.5	3.5	0.5	3.0	0.5
Merged-chr12-85375004-4	chr12	85374404	85375404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026775)	promoter-TSS (NM_026775)	-187.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-159593021-4	chr2	159592525	159593525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-354316.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	2.0	0.5	3.0	2.0	0.5	4.5
Merged-chr19-4283266-4	chr19	4282767	4283767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026720)	promoter-TSS (NM_026720)	-130.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113382077-2	chr6	113381577	113382577	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026552, intron 3 of 5)	intron (NM_026552, intron 3 of 5)	3964.0	NM_001170486	68089.0	Mm.289306	NM_026552	ENSMUSG00000079426	Arpc4	20kDa|5330419I20Rik|AI327076|p20-Arc	actin related protein 2/3 complex, subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102178579-2	chr15	102178079	102179079	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_144942, exon 14 of 15)	exon (NM_144942, exon 14 of 15)	10464.0	NM_001359127	246277.0	Mm.296382	NM_144942	ENSMUSG00000023044	Csad	Csd	cysteine sulfinic acid decarboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80085867-4	chr11	80085360	80086360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3540.0	NM_001029856	237877.0	Mm.89551	NM_001029856	ENSMUSG00000017550	Atad5	C130052G03Rik|FRAG1|Gm17	ATPase family, AAA domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112861008-3	chr12	112860500	112861500	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019925)	promoter-TSS (NM_019925)	-84.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67690214-4	chr10	67689728	67690728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-118269.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53313877-4	chr19	53313389	53314389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	intron (NM_001360348, intron 1 of 5)	2444.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121500916-4	chr5	121500392	121501392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172125, exon 1 of 1)	exon (NM_172125, exon 1 of 1)	2088.0	NM_172125	280667.0	Mm.444773	NM_172125	ENSMUSG00000062438	Adam1b	Adam1|Ftna	a disintegrin and metallopeptidase domain 1b	protein-coding	2.5	10.5	2.5	0.0	14.5	11.0
Merged-chr4-12424182-4	chr4	12423681	12424681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-252166.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-36572156-4	chr3	36571651	36572651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027810)	TTS (NM_027810)	887.0	NM_009828	12428.0	Mm.4189	NM_009828	ENSMUSG00000027715	Ccna2	AA408589|Ccn-1|Ccn1|Ccna|CycA2|Cyca	cyclin A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-30530306-4	chr18	30529799	30530799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	257434.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-31033953-4	chr7	31033452	31034452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287217, intron 8 of 8)	intron (NM_001287217, intron 8 of 8)	6365.0	NR_106017	102465635.0		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	18.5	64.0	40.0	14.0	28.5	18.5
Merged-chr5-124621626-4	chr5	124621125	124622125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026486, intron 13 of 18)	L1MB5|LINE|L1	-7427.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121586836-4	chr10	121586330	121587330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019786)	promoter-TSS (NM_019786)	-36.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-109239493-4	chr13	109238981	109239981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-85263.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5849662-4	chr17	5849115	5850115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025664, intron 1 of 17)	intron (NM_025664, intron 1 of 17)	8235.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167504767-2	chr2	167504267	167505267	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153838, intron 1 of 4)	intron (NR_153838, intron 1 of 4)	1324.0	NM_001360930	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125391778-4	chr5	125391265	125392265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1748.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29488602-4	chr19	29488117	29489117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33370.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80225060-3	chr18	80224587	80225587	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025299, exon 4 of 4)	3' UTR (NM_025299, exon 4 of 4)	18220.0	NM_001042408	27366.0	Mm.172411	NM_025299	ENSMUSG00000057130	Txnl4a	D18Wsu98e|Dim1|Txnl4|U5-15kD|U5-15kDa	thioredoxin-like 4A	protein-coding	17.0	47.0	32.5	46.5	86.0	101.5
Merged-chr19-5041386-4	chr19	5040926	5041926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134155)	promoter-TSS (NM_134155)	72.0	NM_134155	107392.0	Mm.29628	NM_134155	ENSMUSG00000080268	Brms1	AV003220|AW554636	breast cancer metastasis-suppressor 1	protein-coding	18.0	96.0	64.5	37.5	93.5	70.5
Merged-chr7-27331006-4	chr7	27330517	27331517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175641, intron 4 of 32)	CpG	2631.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	2.5	0.0	1.5	5.0	3.0	3.5
Merged-chr1-36508414-4	chr1	36507925	36508925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_033570, exon 7 of 7)	3' UTR (NM_033570, exon 7 of 7)	-3442.0	NM_001331209	94218.0	Mm.256323	NM_053186	ENSMUSG00000001138	Cnnm3	Acdp3|Clp3|mACDP3	cyclin M3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110857058-4	chr9	110856548	110857548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146227)	promoter-TSS (NM_146227)	-919.0	NM_146227	235631.0	Mm.102265	NM_146227	ENSMUSG00000048752	Prss50	79H19C|Tsp50	protease, serine 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112950988-4	chr5	112950496	112951496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 9 of 20)	intron (NM_001285806, intron 9 of 20)	-54634.0	NM_028901	74376.0	Mm.441903	NM_028901	ENSMUSG00000072720	Myo18b	4932408L24Rik|4933411E19Rik|Gm448	myosin XVIIIb	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85472254-4	chr12	85471752	85472752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1638.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-44078839-4	chr17	44078341	44079341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001329619)	promoter-TSS (NM_001329619)	39.0	NM_001329619	83965.0	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107206152-2	chr3	107205652	107206652	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15580.0	NM_001111143	229697.0	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	2.0	1.5	1.0	0.5	0.5	5.5
Merged-chr12-35269684-4	chr12	35269192	35270192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	-74795.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	52.5	125.5	58.5	16.5	40.0	52.0
Merged-chr11-119913782-4	chr11	119913316	119914316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085498)	promoter-TSS (NM_001085498)	6.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122704699-4	chr5	122704193	122705193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2851.0	NM_001310720	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	22.5	66.0	34.5	27.5	75.5	32.0
Merged-chr11-85352736-4	chr11	85352248	85353248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166642)	promoter-TSS (NM_001166642)	-416.0	NM_001166642	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12376334-4	chr15	12375845	12376845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081064, exon 19 of 24)	exon (NM_001081064, exon 19 of 24)	54849.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32186997-3	chr19	32186498	32187498	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	24015.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-133133993-2	chr7	133133493	133134493	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_046279, intron 2 of 2)	(TG)n|Simple_repeat|Simple_repeat	5742.0	NR_046279	74970.0	Mm.491044	NR_046279	ENSMUSG00000109816	4930483O08Rik	-	RIKEN cDNA 4930483O08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90130232-4	chr7	90129726	90130726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146194)	promoter-TSS (NM_146194)	13.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64680216-4	chr5	64679731	64680731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69532.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	3.0	15.5	12.5	4.5	21.0	19.0
Merged-chr15-77970955-4	chr15	77970409	77971409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018749)	promoter-TSS (NM_018749)	-85.0	NM_018749	55944.0	Mm.3955	NM_018749	ENSMUSG00000016554	Eif3d	66/67kDa|AA407891|Eif3s7|eIF3p66	eukaryotic translation initiation factor 3, subunit D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83595917-4	chr11	83595406	83596406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 1 of 8)	MLTR14|LTR|ERV1	-2819.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-69687208-4	chr1	69686689	69687689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1229.0	NM_011770	22779.0	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-60999260-4	chr9	60998778	60999778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-17791.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5303366-7	chr17	5302893	5303893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 8 of 19)	intron (NM_001085355, intron 8 of 19)	115374.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-53479836-1	chr17	53479336	53480336	+	1000.0	f0_balb.idr	intron (NM_025887, intron 1 of 5)	CpG	602.0	NM_025887	271457.0	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	20.5	33.5	52.0	26.0	55.5	43.5
Merged-chr18-23997051-4	chr18	23996554	23997554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011755, intron 2 of 2)	intron (NM_011755, intron 2 of 2)	7420.0	NM_011755	22694.0	Mm.290596	NM_011755	ENSMUSG00000063281	Zfp35	Zfp-35|Znf271|mszf13|mszf20-1|mszf28|mszf68	zinc finger protein 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10801257-4	chr19	10800752	10801752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009852, intron 1 of 12)	intron (NM_009852, intron 1 of 12)	28806.0	NM_001037801	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74918630-4	chr15	74918118	74919118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36433.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	3.0	19.5	24.0	13.5	13.0	12.0
Merged-chr12-26356379-4	chr12	26355896	26356896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130981, intron 2 of 4)	intron (NR_130981, intron 2 of 4)	9686.0	NR_130981	75243.0	Mm.444753	NR_130981	ENSMUSG00000114048	4930549C15Rik	-	RIKEN cDNA 4930549C15 gene	ncRNA	1.0	0.0	4.5	3.5	3.5	3.5
Merged-chr2-25228712-4	chr2	25228143	25229143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_080854)	TTS (NM_080854)	-3941.0	NM_146116	227613.0	Mm.227260	NM_146116	ENSMUSG00000036752	Tubb4b	4930542G03Rik|Tubb2c|Tubb2c1	tubulin, beta 4B class IVB	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51734797-4	chr13	51734300	51735300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281880, intron 2 of 16)	intron (NM_001281880, intron 2 of 16)	58947.0	NM_001281880	20354.0	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	1.5	5.5	0.0	1.5	4.5	0.0
Merged-chr2-13538430-4	chr2	13537947	13538947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010067, intron 1 of 10)	MIR|SINE|MIR	6217.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-28071209-4	chr5	28070715	28071715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153526)	promoter-TSS (NM_153526)	-197.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-169928777-7	chr2	169928278	169929278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34409.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	44.0	85.0	58.0	39.0	53.0	55.0
Merged-chr7-44953976-2	chr7	44953476	44954476	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077591, intron 7 of 10)	intron (NM_001077591, intron 7 of 10)	10736.0	NM_011651	22116.0	Mm.84502	NM_011651	ENSMUSG00000059891	Tsks	Stk22s1|Tssks1	testis-specific serine kinase substrate	protein-coding	0.0	0.0	8.5	0.0	2.0	0.0
Merged-chr7-31151688-4	chr7	31151220	31152220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360351)	promoter-TSS (NM_001360351)	-549.0	NR_153431	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	76.0	165.0	111.5	85.0	187.0	113.5
Merged-chr12-108642264-4	chr12	108641760	108642760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	6507.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-53466709-4	chr3	53466232	53467232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173382, intron 1 of 12)	intron (NM_173382, intron 1 of 12)	2915.0	NM_173382	212127.0	Mm.491292	NM_173382	ENSMUSG00000049504	Proser1	2810046L04Rik|9330161F11	proline and serine rich 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100958483-2	chr7	100957983	100958983	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	B1_Mus1|SINE|Alu	5883.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	2.0	4.0	2.0	1.0	1.0	0.5
Merged-chr16-90934934-4	chr16	90934437	90935437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026502)	promoter-TSS (NM_026502)	-88.0	NM_026502	68001.0	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100706412-7	chr7	100705926	100706926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362169)	promoter-TSS (NM_001362169)	-209.0	NM_001362169	319604.0	Mm.260362	NM_178764	ENSMUSG00000029461	Fam168a	2610030B18Rik|B930006L02Rik|mKIAA0280	family with sequence similarity 168, member A	protein-coding	38.5	77.5	64.0	41.0	88.5	63.5
Merged-chr12-108894231-4	chr12	108893743	108894743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177602)	promoter-TSS (NM_177602)	-29.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24039036-4	chr5	24038540	24039540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8350.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	152.0	384.5	339.0	152.0	355.0	291.0
Merged-chr15-12052404-3	chr15	12051889	12052889	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56382.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79653733-4	chr2	79653237	79654237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080558, intron 9 of 17)	intron (NM_080558, intron 9 of 17)	18312.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	5.0	42.5	29.5	2.5	19.0	22.0
Merged-chr10-62500396-4	chr10	62499905	62500905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 2 of 3)	intron (NM_001358965, intron 2 of 3)	7352.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10991177-4	chr16	10990686	10991686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	1935.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69017609-4	chr8	69017118	69018118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71118.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	111.5	149.0	126.5	43.0	53.5	49.5
Merged-chr4-62502265-4	chr4	62501763	62502763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024257)	promoter-TSS (NM_024257)	-63.0	NM_024257	72748.0	Mm.41506	NM_024257	ENSMUSG00000038422	Hdhd3	2810435D12Rik	haloacid dehalogenase-like hydrolase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83430470-4	chr15	83429978	83430978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358643, intron 1 of 9)	intron (NM_001358643, intron 1 of 9)	2372.0	NM_011862	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152478146-6	chr3	152477652	152478652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081277, intron 12 of 13)	intron (NM_001081277, intron 12 of 13)	81468.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8910530-4	chr4	8910022	8911022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	159198.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18971762-4	chr2	18971233	18972233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	URR1B|DNA|hAT-Charlie	26388.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36244271-4	chr1	36243773	36244773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198899)	promoter-TSS (NM_198899)	29.0	NM_198899	320011.0	Mm.261022	NM_198899	ENSMUSG00000037470	Uggt1	0910001L17Rik|A930007H10Rik|AA589501|AI414429|AI448372|C820010P03Rik|GT|UGT1|Ugcgl1	UDP-glucose glycoprotein glucosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8713026-4	chr19	8712540	8713540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161413, intron 2 of 9)	intron (NM_001161413, intron 2 of 9)	857.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	13.5	126.0	52.5	25.0	50.0	76.0
Merged-chr10-99466843-2	chr10	99466343	99467343	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-142328.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70777270-4	chr8	70776778	70777778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008841)	promoter-TSS (NM_008841)	416.0	NR_029440	72093.0	Mm.271208	NR_029440		2010320M18Rik	-	RIKEN cDNA 2010320M18 gene	ncRNA	6.5	26.5	22.0	2.5	29.0	19.5
Merged-chr9-40759801-1	chr9	40759301	40760301	+	1000.0	f1_balb.idr	intron (NM_133733, intron 1 of 6)	(GA)n|Simple_repeat|Simple_repeat	-41472.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	11.5	40.0	12.5	13.0	26.0	21.0
Merged-chr6-17764506-4	chr6	17763996	17764996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	intron (NM_022332, intron 1 of 15)	15326.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-76130093-3	chr13	76129589	76130589	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081352, intron 18 of 43)	intron (NM_001081352, intron 18 of 43)	31355.0	NM_001081352	218343.0	Mm.277964	NM_001081352	ENSMUSG00000033991	Ttc37	-	tetratricopeptide repeat domain 37	protein-coding	3.0	0.5	4.0	3.0	11.0	11.5
Merged-chr3-89203961-2	chr3	89203461	89204461	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077411, intron 2 of 10)	intron (NM_001077411, intron 2 of 10)	1036.0	NR_122037	14466.0	Mm.5031	NM_008094	ENSMUSG00000028048	Gba	GBA1|GC|GCase|GLUC|betaGC	glucosidase, beta, acid	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-123370001-4	chr7	123369482	123370482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122643)	promoter-TSS (NM_001122643)	-67.0	NM_001316713	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120032532-4	chr4	120032056	120033056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-128650.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114898247-4	chr11	114897730	114898730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170758, intron 4 of 6)	intron (NM_170758, intron 4 of 6)	8189.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-32396002-2	chr6	32395502	32396502	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-115139.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	11.0	30.0	36.5	6.5	26.5	24.5
Merged-chr19-29806600-4	chr19	29806102	29807102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172836)	promoter-TSS (NM_172836)	-593.0	NM_172836	240613.0	Mm.313351	NM_172836	ENSMUSG00000046138	9930021J03Rik	Gm9832|mKIAA2026	RIKEN cDNA 9930021J03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37000493-4	chr1	37000005	37001005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-60978.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59809212-4	chr11	59808697	59809697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045686)	promoter-TSS (NR_045686)	404.0	NM_001271357	216805.0	Mm.339640	NM_146018	ENSMUSG00000032633	Flcn	AU014660|B430214A04Rik|Bhd|FLCL	folliculin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-80402141-4	chr1	80401628	80402628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43804.0	NR_040460	72208.0	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan	RIKEN cDNA 1700016L21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16399638-2	chr7	16399142	16400142	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	CpG	-1554.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85521145-4	chr11	85520623	85521623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 16 of 25)	intron (NM_138681, intron 16 of 25)	167959.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39266766-4	chr10	39266276	39267276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102982.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61251888-4	chr9	61251396	61252396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41913.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25608436-4	chr2	25607899	25608899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024616)	promoter-TSS (NM_001024616)	47.0	NM_001024616	227624.0	Mm.29600	NM_001024616	ENSMUSG00000015087	Rabl6	B230208H17Rik|Rbel1|Rbel1a|Rbel1b|parf	RAB, member RAS oncogene family-like 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133584736-2	chr4	133584236	133585236	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172876)	TTS (NM_172876)	363.0	NM_133884	100210.0	Mm.274001	NM_133884	ENSMUSG00000028848	Gpn2	AI838661|Atpbd1b|R74630	GPN-loop GTPase 2	protein-coding	35.0	69.5	63.5	22.5	72.5	90.0
Merged-chr4-150080490-4	chr4	150080002	150081002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7001.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-55938167-4	chr9	55937669	55938669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081341)	promoter-TSS (NM_001081341)	-50.0	NM_001081341	244891.0	Mm.86588	NM_175536	ENSMUSG00000034007	Scaper	C430017I08|D530014O03Rik|Zfp291	S phase cyclin A-associated protein in the ER	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20697275-4	chr18	20696764	20697764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 5 of 8)	intron (NM_019737, intron 5 of 8)	-32004.0	NR_155534	102633478.0		NR_155534	ENSMUSG00000085595	Gm16090	-	predicted gene 16090	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60699049-2	chr13	60698549	60699549	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	intron (NM_134062, intron 3 of 26)	87315.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	6.5	16.0	1.0	6.5	16.0	1.0
Merged-chr16-5013591-4	chr16	5013080	5014080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133185)	promoter-TSS (NM_133185)	-27.0	NM_133185	66049.0	Mm.27792	NM_133185	ENSMUSG00000022540	Rogdi	0610011C19Rik|AU020118|C76152|Lzf	rogdi homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40760554-4	chr9	40760090	40761090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	-40683.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	23.5	70.0	37.5	59.5	154.5	124.5
Merged-chr16-76765304-4	chr16	76764800	76765800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155453, intron 1 of 3)	intron (NR_155453, intron 1 of 3)	13792.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72583257-3	chr8	72582762	72583762	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357280, intron 4 of 4)	ORR1D2|LTR|ERVL-MaLR	11439.0	NM_001357279	74166.0	Mm.212927	NM_144534	ENSMUSG00000031791	Tmem38a	1110001E17Rik|AI413399|SPR-27|TRIC-A|mg33a	transmembrane protein 38A	protein-coding	25.5	31.0	34.0	20.5	21.5	25.5
Merged-chr10-45276619-4	chr10	45276078	45277078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12727.0	NM_024286	78977.0	Mm.24748	NM_024286	ENSMUSG00000019848	Popdc3	AA682104|Pop3	popeye domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-12294545-4	chr12	12294038	12295038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	32399.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134302929-4	chr1	134302423	134303423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001144855, intron 25 of 28)	intron (NM_001144855, intron 25 of 28)	12919.0	NM_031189	17928.0	Mm.16528	NM_031189	ENSMUSG00000026459	Myog	MYF4|bHLHc3|myo	myogenin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85648177-4	chr12	85647693	85648693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-38527.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63124329-4	chr9	63123835	63124835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22645.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9454540-4	chr13	9454045	9455045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	178020.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46341438-4	chr17	46340939	46341939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-13416.0	NM_170680	224814.0	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16659626-4	chr1	16659132	16660132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037998, exon 1 of 4)	non-coding (NR_037998, exon 1 of 4)	2080.0	NR_037998	329101.0	Mm.406049	NR_037998	ENSMUSG00000097744	D030040B21Rik	D030040B21	RIKEN cDNA D030040B21 gene	ncRNA	26.0	9.5	22.0	26.0	14.0	22.0
Merged-chr14-69136044-4	chr14	69135537	69136537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35765.0	NM_010920	18092.0	Mm.390691	NM_010920	ENSMUSG00000044186	Nkx2-6	AV044928|Nkx-2.6|Nkx2.6|Tix|tinman	NK2 homeobox 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34010391-4	chr11	34009896	34010896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-17203.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13104903-4	chr8	13104417	13105417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146207)	promoter-TSS (NM_146207)	426.0	NM_178708	234069.0	Mm.103427	NM_178708	ENSMUSG00000038542	Pcid2	A730042J05Rik	PCI domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152599513-4	chr1	152599036	152600036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	25681.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-81015007-4	chr8	81014508	81015508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027554)	promoter-TSS (NM_027554)	-102.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	237.5	602.0	430.5	260.0	627.5	550.0
Merged-chr14-31019506-4	chr14	31019018	31020018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153547)	promoter-TSS (NM_153547)	-187.0	NM_001359855	66923.0	Mm.27913	NM_025847	ENSMUSG00000042323	Pbrm1	2610016F04Rik|AI507524|BAF180|Pb1	polybromo 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91916816-4	chr16	91916312	91917312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010587, exon 39 of 39)	3' UTR (NM_010587, exon 39 of 39)	14818.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95840050-4	chr16	95839548	95840548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040485, intron 3 of 3)	intron (NR_040485, intron 3 of 3)	58665.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-118387252-4	chr13	118386762	118387762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021556)	promoter-TSS (NM_021556)	-10.0	NM_021556	59054.0	Mm.143810	NM_021556	ENSMUSG00000021731	Mrps30	2610020A16Rik|AA968347|PAP|Pdcd9	mitochondrial ribosomal protein S30	protein-coding	26.5	90.0	85.0	53.0	85.0	65.5
Merged-chr10-24869892-4	chr10	24869396	24870396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027347)	promoter-TSS (NM_027347)	-90.0	NM_001166416	70208.0	Mm.28020	NM_027347	ENSMUSG00000019984	Med23	130kDa|3000002A17Rik|Crsp3|ESTM7|Sur2|X83317|mKIAA1216	mediator complex subunit 23	protein-coding	2.5	36.5	14.5	5.0	33.5	15.0
Merged-chr13-51072175-4	chr13	51071683	51072683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28544.0	NR_029463	77428.0	Mm.405630	NR_029463		9430083A17Rik	-	RIKEN cDNA 9430083A17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38212857-4	chr18	38212363	38213363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3101.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34011509-2	chr1	34010991	34011991	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_133833)	promoter-TSS (NM_133833)	-334.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31597658-4	chr14	31597160	31598160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20277.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24629871-2	chr16	24629371	24630371	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-91984.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43674996-4	chr19	43674469	43675469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145156)	promoter-TSS (NM_145156)	-88.0	NM_001356944	246696.0	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101356266-4	chr4	101355765	101356765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040708)	promoter-TSS (NR_040708)	-17.0	NR_040708	77866.0	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54847113-4	chr18	54846631	54847631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143049.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127308797-2	chr2	127308297	127309297	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-27362.0	NM_010090	13537.0	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119334504-4	chr9	119333995	119334995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5545.0	NM_010851	17874.0	Mm.213003	NM_010851	ENSMUSG00000032508	Myd88	-	myeloid differentiation primary response gene 88	protein-coding	21.5	20.0	13.0	33.0	24.5	22.0
Merged-chr12-55080362-6	chr12	55079829	55080829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028314)	promoter-TSS (NM_028314)	-167.0	NM_011899	24067.0	Mm.471968	NM_011899	ENSMUSG00000073079	Srp54a	54kDa|Srp54	signal recognition particle 54A	protein-coding	107.5	321.0	264.5	29.5	70.0	90.0
Merged-chr2-117304505-2	chr2	117304005	117305005	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 3 of 16)	intron (NM_011246, intron 3 of 16)	38372.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120728697-2	chr11	120728197	120729197	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007621)	TTS (NM_007621)	-1413.0	NM_001347608	67880.0	Mm.231091	NM_026428	ENSMUSG00000039450	Dcxr	0610038K04Rik|1810027P18Rik|XR	dicarbonyl L-xylulose reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27355255-4	chr14	27354739	27355739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	L1MC4a|LINE|L1	-6150.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	2.0	17.0	18.5	0.5	7.5	8.5
Merged-chr1-161969140-4	chr1	161968638	161969638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204905)	promoter-TSS (NM_001204905)	10.0	NM_001204905	75368.0	Mm.108728	NM_001204904	ENSMUSG00000086277	4930558K02Rik	-	RIKEN cDNA 4930558K02 gene	protein-coding	45.5	91.0	59.5	62.0	96.5	69.5
Merged-chr2-45236358-4	chr2	45235852	45236852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118910.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38642862-2	chr6	38642362	38643362	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5623.0	NM_001033171	74253.0	Mm.121859	NM_001033171	ENSMUSG00000071537	Klrg2	2310020F24Rik	killer cell lectin-like receptor subfamily G, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129113216-2	chr4	129112716	129113716	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286081, intron 2 of 3)	intron (NM_001286081, intron 2 of 3)	6956.0	NM_001286083	15444.0	Mm.384452	NM_010471	ENSMUSG00000028785	Hpca	-	hippocalcin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78183562-4	chr11	78183060	78184060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207523)	promoter-TSS (NM_207523)	24.0	NM_207523	268449.0	Mm.22723	NM_207523	ENSMUSG00000058546	Rpl23a	BC029892|MDA20	ribosomal protein L23A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-52800513-4	chr1	52800008	52801008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008384, intron 1 of 5)	intron (NM_008384, intron 1 of 5)	17180.0	NM_008384	16329.0	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	82.5	131.0	117.0	74.5	154.0	114.5
Merged-chr19-47330915-4	chr19	47330440	47331440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 6 of 14)	intron (NM_008018, intron 6 of 14)	-57351.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-117034019-7	chr13	117033509	117034509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-8493.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125449866-4	chr6	125449351	125450351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44909.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	19.0	43.0	35.5	2.0	4.5	6.0
Merged-chr18-60848991-4	chr18	60848473	60849473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198984)	promoter-TSS (NM_001198984)	-9.0	NM_001198984	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124665093-2	chr2	124664593	124665593	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172537, exon 17 of 17)	exon (NM_172537, exon 17 of 17)	11512.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3627196-4	chr4	3626674	3627674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-29332.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	43.0	54.5	53.0	36.5	55.5	39.5
Merged-chr5-96210100-4	chr5	96209603	96210603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053158)	promoter-TSS (NM_053158)	-12.0	NM_001039084	94061.0	Mm.295499	NM_053158	ENSMUSG00000029486	Mrpl1	2410002L03Rik|5830418D04Rik|AI462572|L1mt	mitochondrial ribosomal protein L1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-60501849-4	chr3	60501357	60502357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	678.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16272950-4	chr7	16272453	16273453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001136270, exon 1 of 1)	exon (NM_001136270, exon 1 of 1)	739.0	NM_001136270	66300.0	Mm.218698	NM_001136270	ENSMUSG00000091811	Inafm1	2610014I16Rik|Prr24	InaF motif containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-45884214-4	chr11	45883701	45884701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045520, intron 2 of 11)	intron (NM_001045520, intron 2 of 11)	32237.0	NM_001045520	216705.0	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123058001-4	chr5	123057521	123058521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-11005.0	NM_001347456	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	45.5	71.0	48.5	66.5	134.5	97.5
Merged-chr6-128764273-4	chr6	128763768	128764768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24373.0	NM_001159904	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	12.0	14.0	18.5	6.5	4.5	15.5
Merged-chr9-20607430-4	chr9	20606934	20607934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033729)	promoter-TSS (NR_033729)	-41.0	NR_033729	66662.0	Mm.477847	NM_175110	ENSMUSG00000062470	Fbxl12os	5730577I03Rik	F-box and leucine-rich repeat protein 12, opposite strand	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-12959234-2	chr10	12958734	12959734	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029075, intron 1 of 2)	intron (NM_029075, intron 1 of 2)	5025.0	NM_029075	74732.0	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-67683574-4	chr13	67683045	67684045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001187)	promoter-TSS (NM_001001187)	-33.0	NM_001001187	408068.0	Mm.435551	NM_175676	ENSMUSG00000048280	Zfp738	3830402I07Rik|6720487G11Rik	zinc finger protein 738	protein-coding	2.5	14.0	10.0	1.5	16.0	16.0
Merged-chr5-134688827-4	chr5	134688332	134689332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010717)	promoter-TSS (NM_010717)	-242.0	NM_010717	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-46832107-2	chr7	46831607	46832607	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13697.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-66486574-4	chr8	66486057	66487057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025465)	promoter-TSS (NM_025465)	-27.0	NM_001357208	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135070005-4	chr4	135069510	135070510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50635.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17398855-4	chr17	17398354	17399354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3832.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-29313429-4	chr10	29312916	29313916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025855)	promoter-TSS (NM_025855)	-84.0	NM_025855	52665.0	Mm.28930	NM_025855	ENSMUSG00000019883	Echdc1	1700028A24Rik|AI314462|AI930038|D10Ertd667e|MMCD	enoyl Coenzyme A hydratase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43827923-4	chr1	43827421	43828421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026430)	promoter-TSS (NM_026430)	-213.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101523785-4	chr13	101523285	101524285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-126205.0	NR_046187	78136.0	Mm.399065	NR_046187		4922502H24Rik	-	RIKEN cDNA 4922502H24 gene	ncRNA	7.0	35.5	12.0	16.0	27.5	23.0
Merged-chr18-6773458-4	chr18	6772972	6773972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181070, intron 2 of 6)	intron (NM_181070, intron 2 of 6)	8305.0	NM_001278447	19330.0	Mm.132802	NM_181070	ENSMUSG00000073639	Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144047108-4	chr2	144046608	144047608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001044750, intron 1 of 2)	intron (NM_001044750, intron 1 of 2)	14006.0	NM_207275	403171.0	Mm.389362	NM_207275	ENSMUSG00000037307	Banf2	4930517K23Rik|Baf-L|Baf-like|Gm115	barrier to autointegration factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116227088-2	chr3	116226588	116227588	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	26396.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17800936-4	chr6	17800436	17801436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	intron (NM_022332, intron 1 of 15)	51766.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-181247350-4	chr1	181246850	181247850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35372.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31482565-4	chr14	31482056	31483056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359849, intron 4 of 4)	intron (NM_001359849, intron 4 of 4)	12202.0	NM_001359850	67011.0	Mm.291731	NM_025907	ENSMUSG00000021891	Mettl6	1600013P15Rik|AI467521|AU020711	methyltransferase like 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73935448-4	chr17	73934946	73935946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 5 of 35)	URR1A|DNA|hAT-Charlie	14750.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126791957-3	chr7	126791457	126792457	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019674, intron 2 of 8)	CpG	407.0	NM_001360464	56420.0	Mm.41998	NM_019674	ENSMUSG00000030697	Ppp4c	1110002D08Rik|AU016079|PP-X|PP4C|Ppx|pp4	protein phosphatase 4, catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-110997771-4	chr8	110997241	110998241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007916)	promoter-TSS (NM_007916)	82.0	NM_007916	13680.0	Mm.287901	NM_007916	ENSMUSG00000015023	Ddx19a	DBP5|Ddx19|Eif4a-rs1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a	protein-coding	64.0	142.5	107.0	48.5	108.5	107.5
Merged-chr7-39552694-4	chr7	39552235	39553235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	34969.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	210.5	415.0	273.5	115.5	275.0	318.0
Merged-chr17-74866514-2	chr17	74866014	74867014	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139015.0	NM_019919	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	18.5	20.0	28.5	6.5	5.0	5.0
Merged-chr13-112660683-4	chr13	112660190	112661190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178746)	promoter-TSS (NM_178746)	-76.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	71.5	115.0	85.0	34.5	68.5	47.0
Merged-chr18-3281104-4	chr18	3280600	3281600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311067)	promoter-TSS (NM_001311067)	32.0	NM_001311066	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	48.5	147.0	102.5	49.5	143.0	99.0
Merged-chr4-115737708-4	chr4	115737209	115738209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172698)	promoter-TSS (NM_172698)	-364.0	NM_172698	230648.0	Mm.283565	NM_172698	ENSMUSG00000034210	Efcab14	4732418C07Rik	EF-hand calcium binding domain 14	protein-coding	12.0	15.5	12.0	8.0	5.0	3.5
Merged-chr5-43081981-4	chr5	43081466	43082466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-151497.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0.0	0.5	0.5	0.0	0.5	0.0
Merged-chr3-27270324-4	chr3	27269844	27270844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46733.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106222494-4	chr9	106221967	106222967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031178)	promoter-TSS (NM_031178)	-131.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	22.0	111.5	77.5	70.0	123.5	96.0
Merged-chr1-167350619-2	chr1	167350119	167351119	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019993, intron 1 of 10)	intron (NM_019993, intron 1 of 10)	628.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60341777-4	chr10	60341270	60342270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 37 of 68)	ORR1E|LTR|ERVL-MaLR	-5081.0	NM_001159572	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84084130-4	chr17	84083625	84084625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045458, intron 2 of 5)	intron (NR_045458, intron 2 of 5)	5465.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29614866-4	chr17	29614366	29615366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132314)	promoter-TSS (NR_132314)	77.0	NM_021419	58230.0	Mm.305994	NM_021419	ENSMUSG00000090083	Rnf8	3830404E21Rik|AIP37|laXp180	ring finger protein 8	protein-coding	6.5	12.0	15.5	11.5	17.5	10.5
Merged-chr16-33885828-4	chr16	33885337	33886337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 5 of 14)	intron (NM_001145884, intron 5 of 14)	56172.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59177748-4	chr4	59177243	59178243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11807.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	14.5	47.5	48.0	7.5	31.0	35.5
Merged-chr7-127745940-4	chr7	127745436	127746436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172748)	promoter-TSS (NM_172748)	-839.0	NM_172748	233902.0	Mm.259353	NM_172748	ENSMUSG00000030811	Fbxl19	6030430O11|BC059812|Fbl19	F-box and leucine-rich repeat protein 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128727540-4	chr4	128727040	128728040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195083)	promoter-TSS (NM_001195083)	-31.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	21.5	40.0	24.5	16.0	25.5	22.5
Merged-chr12-72976880-2	chr12	72976380	72977380	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36998.0	NM_011384	20476.0	Mm.57138	NM_011384	ENSMUSG00000021099	Six6	Optx2|Six9	sine oculis-related homeobox 6	protein-coding	0.0	0.0	0.0	4.0	0.0	2.5
Merged-chr8-39619980-4	chr8	39619462	39620462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_031195, exon 5 of 9)	exon (NM_031195, exon 5 of 9)	22716.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	46.0	102.0	79.5	35.0	118.5	53.0
Merged-chr14-75180802-4	chr14	75180247	75181247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	44322.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32562916-2	chr4	32562416	32563416	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001109661, exon 3 of 5)	exon (NM_001109661, exon 3 of 5)	8746.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64141511-4	chr7	64140999	64141999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12336.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22445065-4	chr16	22444556	22445556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger15a|DNA|TcMar-Tigger	-5486.0	NM_023794	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-49151711-3	chr10	49151216	49152216	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358866, intron 14 of 16)	ERVB4_3-LTR_MM|LTR|ERVK	636221.0	NM_001358866	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	8.0	0.0	8.0	3.5	22.0	10.0
Merged-chr13-95019541-4	chr13	95019023	95020023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172590, intron 12 of 12)	intron (NM_172590, intron 12 of 12)	43179.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30133739-4	chr2	30133229	30134229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146252)	promoter-TSS (NM_146252)	-17.0	NM_146252	70296.0	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-26794890-2	chr10	26794390	26795390	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	22378.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191071126-5	chr1	191070645	191071645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198654, intron 3 of 5)	intron (NM_198654, intron 3 of 5)	8124.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	119.5	220.5	186.5	40.0	148.5	138.0
Merged-chr13-113878854-2	chr13	113878354	113879354	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	84346.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-34539821-2	chr15	34539321	34540321	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44510.0	NM_152894	67724.0	Mm.248779	NM_026340	ENSMUSG00000022325	Pop1	4932434G09Rik	processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118707994-2	chr7	118707509	118708509	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2271.0	NM_019580	56209.0	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	1.5	0.0	2.5	0.0	10.0	0.0
Merged-chr12-69448070-4	chr12	69447575	69448575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27475.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	172.5	380.0	252.0	171.0	338.5	272.5
Merged-chr3-87617525-4	chr3	87617001	87618001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001003912)	promoter-TSS (NM_001003912)	-58.0	NM_001360197	213498.0	Mm.287267	NM_001003912	ENSMUSG00000041977	Arhgef11	PDZ-RhoGEF|Prg|RhoGEF|mKIAA0380	Rho guanine nucleotide exchange factor (GEF) 11	protein-coding	32.0	35.0	33.5	28.5	27.0	41.0
Merged-chr9-72958795-4	chr9	72958290	72959290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026314)	promoter-TSS (NM_026314)	5.0	NM_001163725	67685.0	Mm.31817	NM_026314	ENSMUSG00000092192	Dyx1c1	1700010I24Rik|Dnaaf4|EKN1|b2b811.1Clo|b2b811Clo	dyslexia susceptibility 1 candidate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101466852-2	chr11	101466352	101467352	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012037)	promoter-TSS (NM_012037)	-653.0	NM_012037	26949.0	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43782702-4	chr7	43782224	43783224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133712, intron 2 of 5)	intron (NM_133712, intron 2 of 5)	1670.0	NM_133712	69540.0	Mm.46421	NM_133712	ENSMUSG00000030693	Klk10	2300002A13Rik|NES1|PRSSL1	kallikrein related-peptidase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84088170-4	chr18	84087646	84088646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146090)	promoter-TSS (NM_146090)	-12.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97151113-2	chr11	97150613	97151613	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1401.0	NM_198100	73174.0	Mm.27882	NM_198100	ENSMUSG00000038517	Tbkbp1	3110043L15Rik|ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-30674928-4	chr10	30674404	30675404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 9 of 14)	intron (NM_001358842, intron 9 of 14)	-19037.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-104398648-4	chr7	104398149	104399149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40003.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	45.5	102.5	61.0	53.0	110.0	94.5
Merged-chr12-40381381-4	chr12	40380885	40381885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178845, intron 1 of 11)	intron (NM_178845, intron 1 of 11)	64405.0	NM_172575	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120287935-4	chr4	120287432	120288432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194060)	promoter-TSS (NM_194060)	-671.0	NM_194060	329934.0	Mm.277090	NM_194060	ENSMUSG00000052135	Foxo6	-	forkhead box O6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-107497027-4	chr1	107496537	107497537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14386.0	NM_001174170	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35116932-4	chr9	35116419	35117419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009178)	promoter-TSS (NM_009178)	-55.0	NM_009178	20443.0	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	SIAT4-C|ST3Gal IV|ST3GalIV|Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	1.0	8.5	1.5	0.0	0.5	0.0
Merged-chr10-42678889-4	chr10	42678400	42679400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172416)	promoter-TSS (NM_172416)	-16.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25249368-5	chr7	25248884	25249884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010155, intron 1 of 3)	CpG	1374.0	NM_010155	13875.0	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91039934-2	chr1	91039434	91040434	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-13510.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-166138340-4	chr1	166137847	166138847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360925, intron 1 of 5)	intron (NM_001360925, intron 1 of 5)	8126.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27571450-4	chr17	27570924	27571924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20A2|LTR|ERVK	-5697.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	17.0	51.0	33.5	34.0	28.5	40.5
Merged-chr2-69885962-2	chr2	69885462	69886462	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029280)	promoter-TSS (NM_029280)	-347.0	NR_110977	75422.0	Mm.10508	NM_029280	ENSMUSG00000051730	Mettl5	2810410A08Rik	methyltransferase like 5	protein-coding	19.0	38.0	23.0	12.5	42.5	13.0
Merged-chr8-105900404-4	chr8	105899899	105900899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173432)	promoter-TSS (NM_173432)	-75.0	NM_173432	244631.0	Mm.27627	NM_173432	ENSMUSG00000048310	Pskh1	AW539964|E130013P03Rik|b2b1230Clo	protein serine kinase H1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-28495237-4	chr2	28494734	28495734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_I-int|LTR|ERV1	-1657.0	NM_139197	227671.0	Mm.484270	NM_139197	ENSMUSG00000026829	Gbgt1	Fgs|Fs	globoside alpha-1,3-N-acetylgalactosaminyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74248937-4	chr1	74248427	74249427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 4 of 10)	intron (NM_001357387, intron 4 of 10)	12410.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121630800-4	chr3	121630293	121631293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12692.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59767640-2	chr13	59767140	59768140	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026921, intron 1 of 3)	intron (NM_026921, intron 1 of 3)	2149.0	NM_026921	69046.0	Mm.7884	NM_026921	ENSMUSG00000044792	Isca1	1810010A06Rik|Hbld2	iron-sulfur cluster assembly 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132247768-4	chr2	132247262	132248262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001141971)	promoter-TSS (NM_001141971)	26.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-119157904-4	chr12	119157410	119158410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80366.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-35932439-4	chr3	35931945	35932945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205362)	promoter-TSS (NM_001205362)	-111.0	NM_001205362	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-26792036-4	chr13	26791542	26792542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-21877.0	NM_008232	15192.0	Mm.7411	NM_008232	ENSMUSG00000045835	Hdgfl1	4921520N01Rik|HRP-1|Hdgfrp1|Pwwp1	hepatoma derived growth factor-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131245163-4	chr1	131244619	131245619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313731)	promoter-TSS (NM_001313731)	59.0	NM_001313731	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	8.5	19.5	22.0	3.5	8.5	8.0
Merged-chr12-32820262-4	chr12	32819767	32820767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021524)	promoter-TSS (NM_021524)	-68.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125405141-4	chr5	125404643	125405643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15126.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4137141-7	chr7	4136642	4137642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033548)	promoter-TSS (NR_033548)	86.0	NM_172736	232798.0	Mm.22831	NM_172736	ENSMUSG00000035545	Leng8	AW049671	leukocyte receptor cluster (LRC) member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111544128-4	chr10	111543634	111544634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37848.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43383406-4	chr4	43382915	43383915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037709, intron 1 of 11)	intron (NM_001037709, intron 1 of 11)	1433.0	NM_001037709	100213.0	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	172.0	405.5	268.5	70.0	144.5	124.5
Merged-chr5-124112840-2	chr5	124112340	124113340	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_025671, exon 2 of 7)	exon (NM_025671, exon 2 of 7)	519.0	NM_001347478	66627.0	Mm.7050	NM_025671	ENSMUSG00000023707	Ogfod2	1300006G11Rik|5730405M13Rik|AU041636|AW552395	2-oxoglutarate and iron-dependent oxygenase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-15925073-4	chr19	15924582	15925582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205339)	promoter-TSS (NM_001205339)	-23.0	NM_177420	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	5.5	27.0	9.0	7.0	10.5	15.5
Merged-chr4-56802406-4	chr4	56801869	56802869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026079)	promoter-TSS (NM_026079)	-38.0	NM_026079	230233.0	Mm.282743	NM_026079	ENSMUSG00000028431	Ikbkap	3110040G09Rik|6030413P05|C78473|Elp1|IKAP	inhibitor of kappa light polypeptide enhancer in B cells, kinase complex-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116868322-4	chr11	116867847	116868847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178620, intron 9 of 12)	intron (NM_178620, intron 9 of 12)	14347.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	33.0	80.5	60.5	50.0	58.5	51.5
Merged-chr16-24879326-4	chr16	24878832	24879832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 9 of 12)	intron (NM_178665, intron 9 of 12)	157477.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100405619-4	chr15	100405109	100406109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001146161, exon 8 of 16)	exon (NM_001146161, exon 8 of 16)	17446.0	NM_001146161	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	74.5	166.0	185.0	105.0	256.5	169.5
Merged-chr2-60284799-2	chr2	60284293	60285293	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001290660)	promoter-TSS (NM_001290660)	-309.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-82370839-4	chr8	82370328	82371328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008357, intron 2 of 7)	intron (NM_008357, intron 2 of 7)	31758.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	24.5	29.5	26.0	17.0	65.0	35.5
Merged-chr1-152901873-2	chr1	152901373	152902373	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160257, intron 1 of 23)	intron (NM_001160257, intron 1 of 23)	772.0	NM_001359257	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-97198395-4	chr13	97197894	97198894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010422)	promoter-TSS (NM_010422)	-37.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110486233-4	chr12	110485723	110486723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081457, intron 1 of 12)	intron (NM_001081457, intron 1 of 12)	484.0	NM_012023	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27911468-4	chr17	27910981	27911981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	MTC|LTR|ERVL-MaLR	2175.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	31.0	154.0	113.5	64.5	143.0	104.0
Merged-chr19-57359832-2	chr19	57359332	57360332	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040316, intron 1 of 2)	intron (NR_040316, intron 1 of 2)	1067.0	NR_040316	320879.0	Mm.375089	NR_040316	ENSMUSG00000097785	B230217O12Rik	-	RIKEN cDNA B230217O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-88838359-6	chr18	88837833	88838833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	55874.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103992849-4	chr11	103992358	103993358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25987.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	10.0	10.5	2.0	10.0	10.5	2.0
Merged-chr13-35783784-4	chr13	35783278	35784278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001123386, intron 1 of 6)	intron (NM_001123386, intron 1 of 6)	42376.0	NM_001123386	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114316595-4	chr7	114316106	114317106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_029437, intron 3 of 3)	intron (NR_029437, intron 3 of 3)	-40490.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	11.0	24.0	10.0	19.5	25.0	15.5
Merged-chr11-114226775-4	chr11	114226276	114227276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28518.0	NR_045930	73536.0	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28391465-2	chr7	28390965	28391965	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026042, intron 1 of 3)	B1_Mus2|SINE|Alu	1225.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78347375-2	chr11	78346875	78347875	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313985, intron 2 of 4)	intron (NM_001313985, intron 2 of 4)	665.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121476425-4	chr10	121475930	121476930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138956)	promoter-TSS (NM_138956)	-180.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	26.0	76.0	19.0	25.5	114.0	59.0
Merged-chr15-76710589-4	chr15	76710109	76711109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145471)	promoter-TSS (NM_145471)	-32.0	NM_145471	223664.0	Mm.277582	NM_145471	ENSMUSG00000033728	Lrrc14	E130306I01Rik|mKIAA0014	leucine rich repeat containing 14	protein-coding	13.5	16.0	8.5	8.0	8.5	17.5
Merged-chr5-86068485-4	chr5	86068027	86069027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2944.0	NM_007683	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	22.5	24.0	30.0	9.5	23.5	16.5
Merged-chr5-44212058-4	chr5	44211580	44212580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173764, intron 2 of 13)	ORR1D1|LTR|ERVL-MaLR	14526.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	2.5	7.5	4.5	0.0	3.0	3.5
Merged-chr17-78917965-4	chr17	78917460	78918460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177403, intron 1 of 4)	intron (NM_001177403, intron 1 of 4)	1461.0	NM_001177402	68554.0	Mm.391820	NM_001177402	ENSMUSG00000062691	Cebpzos	1110001A16Rik	CCAAT/enhancer binding protein (C/EBP), zeta, opposite strand	protein-coding	51.5	93.0	48.5	3.5	32.5	25.0
Merged-chr5-108131954-4	chr5	108131459	108132459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028481)	promoter-TSS (NM_028481)	661.0	NM_001347383	73130.0	Mm.363960	NM_028876	ENSMUSG00000063406	Tmed5	3110020O18Rik|4432412D15Rik|p24gamma2	transmembrane p24 trafficking protein 5	protein-coding	2.0	4.5	5.0	0.0	5.0	8.5
Merged-chr4-139228079-4	chr4	139227566	139228566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	33955.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	29.0	75.0	76.0	40.5	37.5	38.5
Merged-chr19-60889748-4	chr19	60889261	60890261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018869)	promoter-TSS (NM_018869)	12.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	43.5	131.5	107.0	58.5	139.0	127.5
Merged-chr4-155705562-4	chr4	155705063	155706063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026899, intron 1 of 4)	CpG	748.0	NM_026899	68991.0	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	122.5	169.0	197.5	108.5	256.5	147.0
Merged-chr16-36531302-4	chr16	36530793	36531793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013803, intron 1 of 6)	intron (NM_013803, intron 1 of 6)	30841.0	NM_013803	12374.0	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-140947172-4	chr7	140946662	140947662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153832, exon 12 of 12)	non-coding (NR_153832, exon 12 of 12)	3077.0	NM_053088	73835.0	Mm.389989	NM_053088	ENSMUSG00000025489	Ifitm5	1110003J06Rik|AW213665|Bril|DSPA1|Hrmp1|Hrtm1	interferon induced transmembrane protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9737853-4	chr4	9737355	9738355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-32730.0	NR_030693	320152.0	Mm.159946	NR_030693		4930412C18Rik	5730591J02Rik	RIKEN cDNA 4930412C18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3170179-2	chr11	3169684	3170684	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 7 of 32)	MTC|LTR|ERVL-MaLR	23279.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-12842702-4	chr10	12842181	12843181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 1 of 73)	intron (NM_011682, intron 1 of 73)	19054.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	2.0	0.0	5.0	2.0	10.5	0.5
Merged-chr13-98868724-3	chr13	98868219	98869219	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 7 of 23)	intron (NM_178716, intron 7 of 23)	22323.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	3.0	7.0	4.0	2.5	18.0	6.0
Merged-chr1-64600844-4	chr1	64600349	64601349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009952, exon 9 of 9)	3' UTR (NM_009952, exon 9 of 9)	16319.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120155641-4	chr6	120155132	120156132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-38191.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	26.5	82.0	26.0	16.0	77.0	24.5
Merged-chr1-71557105-4	chr1	71556603	71557603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026195)	promoter-TSS (NM_026195)	-53.0	NM_026195	108147.0	Mm.38010	NM_026195	ENSMUSG00000026192	Atic	2610509C24Rik|AA536954|AW212393	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83527871-4	chr17	83527374	83528374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-13541.0	NM_001159529	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8888794-4	chr19	8888283	8889283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025463)	promoter-TSS (NM_025463)	-9.0	NR_039598	100628605.0		NR_039598	ENSMUSG00000093314	Mir5136	mmu-mir-5136|mu-mir-5136	microRNA 5136	ncRNA	13.5	19.5	16.5	4.0	23.0	10.0
Merged-chr18-69507926-2	chr18	69507426	69508426	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 5 of 19)	intron (NM_001361128, intron 5 of 19)	161766.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135921937-2	chr4	135921437	135922437	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024243, intron 1 of 7)	intron (NM_024243, intron 1 of 7)	1211.0	NM_024243	71665.0	Mm.439940	NM_024243	ENSMUSG00000028673	Fuca1	0610006A03Rik|9530055J05Rik|Afuc|Fuca	fucosidase, alpha-L- 1, tissue	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56269345-4	chr17	56268848	56269848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_174989)	TTS (NM_174989)	7419.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67448236-4	chr17	67447753	67448753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93762.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	1.0	0.5	0.0	0.0	2.0	0.5
Merged-chr4-132049258-4	chr4	132048782	132049782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001128606)	promoter-TSS (NM_001128606)	-204.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-103434185-4	chr12	103433673	103434673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026790)	promoter-TSS (NM_026790)	-16.0	NM_026790	52668.0	Mm.2121	NM_026790	ENSMUSG00000064215	Ifi27	1110013J02Rik|2900026P10Rik|D12Ertd647e|ISG12a|Ifi27l1	interferon, alpha-inducible protein 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-63968436-2	chr5	63967936	63968936	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145923, intron 1 of 6)	CpG	461.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83809886-4	chr7	83809374	83810374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15035.0	NM_029335	75556.0	Mm.17649	NM_029335	ENSMUSG00000011154	Cfap161	1700026D08Rik|AW047638|AW551802	cilia and flagella associated protein 161	protein-coding	1.5	12.5	2.0	2.5	0.0	8.5
Merged-chr9-7595405-4	chr9	7594905	7595905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24009.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-99196437-4	chr13	99195965	99196965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	11642.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-45868893-4	chr1	45868388	45869388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56706.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-39268980-3	chr3	39268468	39269468	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	382028.0	NM_183221	329628.0	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	38.5	68.5	68.5	19.0	24.5	21.0
Merged-chr8-14090437-4	chr8	14089935	14090935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034862)	promoter-TSS (NM_001034862)	-108.0	NM_001034862	234086.0	Mm.268896	NM_001034862	ENSMUSG00000051978	Erich1	-	glutamate rich 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102203510-4	chr15	102202989	102203989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289694)	promoter-TSS (NM_001289694)	-156.0	NM_001289694	68744.0	Mm.352945	NM_153194	ENSMUSG00000046897	Zfp740	1110034O07Rik|AW548228|Znf740	zinc finger protein 740	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31804589-1	chr6	31804089	31805089	+	1000.0	f0_balb.idr	Intergenic	IAPLTR1_Mm|LTR|ERVK	-138458.0	NR_152155	434003.0	Mm.332979	NR_152155	ENSMUSG00000084973	Gm13848	-	predicted gene 13848	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60804337-3	chr18	60803826	60804826	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042605, intron 1 of 8)	B1_Mm|SINE|Alu	477.0	NM_010545	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	85.0	208.5	177.0	95.5	247.5	103.0
Merged-chr2-156417416-4	chr2	156416912	156417912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3497.0	NM_001291122	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	39.5	70.0	52.0	24.5	84.0	51.5
Merged-chr7-16913942-4	chr7	16913440	16914440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7450.0	NM_008967	19222.0	Mm.287572	NM_008967	ENSMUSG00000043017	Ptgir	IP|PGI2	prostaglandin I receptor (IP)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63644660-2	chr9	63644160	63645160	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357323)	TTS (NM_001357323)	42014.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-116474283-2	chr10	116473783	116474783	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021452)	promoter-TSS (NM_021452)	-760.0	NM_021452	58802.0	Mm.440652	NM_021452	ENSMUSG00000054934	Kcnmb4	1700058G18Rik|2900045G12Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27195813-4	chr7	27195312	27196312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243888)	promoter-TSS (NM_001243888)	31.0	NM_001243888	414069.0	Mm.379069	NM_001243888	ENSMUSG00000078786	BC024978	-	cDNA sequence BC024978	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50838207-4	chr14	50837713	50838713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009351, intron 35 of 54)	intron (NM_009351, intron 35 of 54)	30297.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	125.5	310.0	226.5	97.0	250.5	166.0
Merged-chr6-131422016-1	chr6	131421516	131422516	+	1000.0	f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-33566.0	NM_011733	56449.0	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	8.0	0.0	2.5	6.5	5.5	0.5
Merged-chr13-94711504-4	chr13	94711009	94712009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-77434.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-4876767-4	chr5	4876263	4877263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 14 of 14)	intron (NM_011074, intron 14 of 14)	-118547.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	5.0	33.5	16.5	5.5	17.0	5.5
Merged-chr1-189657670-3	chr1	189657179	189658179	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081363, exon 12 of 18)	exon (NM_001081363, exon 12 of 18)	30407.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-76944213-4	chr18	76943717	76944717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039201)	promoter-TSS (NM_001039201)	102.0	NM_001039202	76987.0	Mm.236127	NM_029826	ENSMUSG00000025421	Hdhd2	0610039H12Rik|3110052N05Rik	haloacid dehalogenase-like hydrolase domain containing 2	protein-coding	48.0	97.5	76.0	32.5	92.0	83.0
Merged-chr7-30973954-4	chr7	30973435	30974435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017405)	promoter-TSS (NM_017405)	131.0	NR_038860	76415.0	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	11.0	20.5	32.5	6.0	16.0	19.0
Merged-chr8-35428300-4	chr8	35427806	35428806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52565.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	2.5	13.5	5.5	13.5	23.5	17.5
Merged-chr1-107389939-4	chr1	107389431	107390431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	27617.0	NM_025867	66957.0	Mm.12638	NM_025867	ENSMUSG00000026327	Serpinb11	2310046M08Rik|AU015399	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 11	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr7-28709680-4	chr7	28709184	28710184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-7098.0	NM_001310687	50760.0	Mm.358659	NM_015796	ENSMUSG00000030598	Fbxo17	Fbg4|Fbx17|Fbxo26	F-box protein 17	protein-coding	9.0	2.0	3.5	6.5	0.5	3.0
Merged-chr9-31030380-4	chr9	31029906	31030906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172765)	promoter-TSS (NM_172765)	-238.0	NM_001115130	235132.0	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67353098-4	chr17	67352599	67353599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	1360.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85653354-2	chr12	85652854	85653854	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33366.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57550319-4	chr16	57549803	57550803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	1061.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-4388095-4	chr10	4387618	4388618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359811)	promoter-TSS (NM_001359811)	-10.0	NM_001033466	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	9.5	17.0	16.0	6.5	15.0	13.0
Merged-chr11-70237867-4	chr11	70237381	70238381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177603)	promoter-TSS (NM_001177603)	33.0	NM_001177601	104457.0	Mm.30016	NM_026757	ENSMUSG00000020831	0610010K14Rik	1110020A23Rik|AL033328|AU045833|Bap18	RIKEN cDNA 0610010K14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-110395867-4	chr13	110395371	110396371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152804, intron 1 of 13)	intron (NM_152804, intron 1 of 13)	827.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-70638167-4	chr13	70637690	70638690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144837)	promoter-TSS (NM_144837)	-556.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-61592527-4	chr3	61592027	61593027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	228020.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107633509-4	chr9	107633011	107634011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008138, intron 1 of 8)	intron (NM_008138, intron 1 of 8)	1831.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	10.5	29.0	25.5	11.5	28.5	37.0
Merged-chr2-13558802-4	chr2	13558292	13559292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14128.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110447014-4	chr12	110446539	110447539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001135001)	promoter-TSS (NM_001135001)	-140.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126701261-4	chr7	126700742	126701742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301374, intron 6 of 10)	intron (NM_001301374, intron 6 of 10)	2978.0	NM_001301374	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-65562723-4	chr16	65562229	65563229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026879)	promoter-TSS (NM_026879)	-32.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137909641-4	chr4	137909128	137910128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 2 of 19)	intron (NM_199307, intron 2 of 19)	47391.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70968709-2	chr11	70968209	70969209	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083331, intron 1 of 16)	intron (NM_001083331, intron 1 of 16)	1264.0	NM_172394	19069.0	Mm.288962	NM_172394	ENSMUSG00000040667	Nup88	Nup84|Prei2	nucleoporin 88	protein-coding	0.0	0.0	1.5	0.0	3.5	5.5
Merged-chr11-83544462-4	chr11	83543938	83544938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13920.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90491508-3	chr3	90491018	90492018	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133854)	promoter-TSS (NM_133854)	-505.0	NM_133854	20615.0	Mm.331182	NM_133854	ENSMUSG00000001018	Snapin	25kDa|AA407989|AV026596|Bloc1s7|Snap25bp|Snapap	SNAP-associated protein	protein-coding	4.0	0.5	4.0	3.5	0.0	3.5
Merged-chr12-73603697-4	chr12	73603159	73604159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	18863.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-21286234-4	chr12	21285680	21286680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018813)	promoter-TSS (NM_018813)	104.0	NM_008403	16413.0	Mm.273333	NM_008403	ENSMUSG00000062352	Itgb1bp1	AI449260|AU019480|Icap1	integrin beta 1 binding protein 1	protein-coding	82.5	291.0	256.0	96.5	334.0	262.5
Merged-chr6-108571372-4	chr6	108570867	108571867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51800.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35667579-4	chr17	35667096	35668096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175137)	promoter-TSS (NM_175137)	-4.0	NM_175137	68915.0	Mm.32002	NM_175137	ENSMUSG00000038838	Vars2	1190004I24Rik|Vars2l|mKIAA1885	valyl-tRNA synthetase 2, mitochondrial	protein-coding	21.5	12.5	27.0	6.0	20.0	22.5
Merged-chr19-57273032-4	chr19	57272527	57273527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045319)	promoter-TSS (NR_045319)	-933.0	NR_045319	78120.0	Mm.445892	NR_045319		4930449E18Rik	-	RIKEN cDNA 4930449E18 gene	ncRNA	6.5	14.0	14.0	7.0	11.5	10.5
Merged-chr7-73572760-4	chr7	73572261	73573261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14366.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71543896-4	chr6	71543375	71544375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025783)	promoter-TSS (NM_025783)	23.0	NM_025783	66700.0	Mm.181278	NM_025783	ENSMUSG00000053119	Chmp3	25.1|4921505F14Rik|9130011K15Rik|CGI-49|D6Ertd286e|NEDF|Vps24	charged multivesicular body protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77545114-4	chr10	77544588	77545588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 3 of 15)	intron (NM_008404, intron 3 of 15)	14740.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43580741-4	chr17	43580239	43581239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	10770.0	NR_045445	73504.0	Mm.9277	NR_045444	ENSMUSG00000090307	1700071M16Rik	-	RIKEN cDNA 1700071M16 gene	ncRNA	19.0	104.5	60.0	50.0	62.0	67.5
Merged-chr13-113611397-4	chr13	113610904	113611904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	7160.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126898277-4	chr7	126897798	126898798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028389)	promoter-TSS (NM_028389)	-20.0	NM_028389	68742.0	Mm.248646	NM_026827	ENSMUSG00000060538	Tmem219	1110032O16Rik|2900045G02Rik|IGFBP-3R	transmembrane protein 219	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120163703-4	chr10	120163224	120164224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359184, intron 8 of 11)	intron (NM_001359184, intron 8 of 11)	37873.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-78607967-4	chr1	78607482	78608482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-49843.0	NM_001136222	74205.0	Mm.276016	NM_028817	ENSMUSG00000032883	Acsl3	2610510B12Rik|Acs3|C85929|Facl3|Pro2194	acyl-CoA synthetase long-chain family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-84835373-4	chr16	84834882	84835882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302216)	promoter-TSS (NM_001302216)	243.0	NM_016755	11957.0	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42564151-4	chr19	42563636	42564636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177464, exon 2 of 7)	exon (NM_177464, exon 2 of 7)	45331.0	NM_177464	52013.0	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	1.0	24.0	11.0	4.5	20.0	6.0
Merged-chr16-91406972-4	chr16	91406477	91407477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008349, intron 1 of 6)	intron (NM_008349, intron 1 of 6)	742.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146845087-4	chr5	146844588	146845588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026864)	promoter-TSS (NM_026864)	17.0	NM_026864	68895.0	Mm.266978	NM_026864	ENSMUSG00000029641	Rasl11a	1110065D03Rik|AI852031	RAS-like, family 11, member A	protein-coding	2.0	54.0	33.0	16.0	13.0	8.5
Merged-chr11-103953980-4	chr11	103953473	103954473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008740)	promoter-TSS (NM_008740)	83.0	NM_008740	18195.0	Mm.260117	NM_008740	ENSMUSG00000034187	Nsf	AI316878|AU020090|AU067812|SKD2	N-ethylmaleimide sensitive fusion protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74432770-4	chr17	74432254	74433254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 8 of 8)	MLT1A0|LTR|ERVL-MaLR	26354.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55643620-4	chr19	55643100	55644100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045318, exon 3 of 4)	non-coding (NR_045318, exon 3 of 4)	58604.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134083807-4	chr1	134083299	134084299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4644.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70012603-4	chr9	70012101	70013101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039519)	promoter-TSS (NM_001039519)	53.0	NR_104093	235459.0	Mm.293117	NM_199151	ENSMUSG00000033543	Gtf2a2	TFIIA-gamma|TfIIg|Tfiia2	general transcription factor II A, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34164873-2	chr1	34164373	34165373	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010081, intron 8 of 23)	intron (NM_010081, intron 8 of 23)	4543.0	NM_010081	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117726105-2	chr10	117725605	117726605	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-15347.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128923536-1	chr10	128923036	128924036	+	1000.0	f0_c57.idr	promoter-TSS (NM_015740)	promoter-TSS (NM_015740)	-12.0	NM_015740	14533.0	Mm.30118	NM_015740	ENSMUSG00000090247	Bloc1s1	AI839753|BLOS1|Gcn5l1	biogenesis of lysosomal organelles complex-1, subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151689735-4	chr1	151689227	151690227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 6 of 13)	intron (NM_022018, intron 6 of 13)	65000.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-48602011-4	chr6	48601531	48602531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	8148.0	NM_001079904	58887.0	Mm.219183	NM_175099	ENSMUSG00000052751	Repin1	AI425994|Ap4|E430037F08Rik|Zfp-464|Zfp464	replication initiator 1	protein-coding	11.5	18.0	13.0	7.5	0.5	6.0
Merged-chr5-64206848-2	chr5	64206348	64207348	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	MTE2b|LTR|ERVL-MaLR	-23509.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117417163-4	chr5	117416671	117417671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	MTC|LTR|ERVL-MaLR	3169.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83914389-4	chr6	83913892	83914892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008717)	promoter-TSS (NM_008717)	39.0	NM_001355284	18139.0	Mm.132392	NM_008717	ENSMUSG00000030016	Zfp638	AI323587|Np220|Zfml|Znf638|mNP220	zinc finger protein 638	protein-coding	33.5	80.0	73.5	26.0	89.0	101.0
Merged-chr14-121379945-3	chr14	121379413	121380413	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145465)	promoter-TSS (NM_145465)	-683.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	23.5	94.5	67.5	53.0	133.5	83.5
Merged-chr6-120091106-4	chr6	120090594	120091594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2286.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31320491-2	chr6	31319991	31320991	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040261, intron 3 of 4)	intron (NR_040261, intron 3 of 4)	78282.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-3771659-4	chr13	3771157	3772157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32661.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-67188506-4	chr14	67188014	67189014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44778.0	NM_010095	13592.0	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	16.5	53.0	47.5	28.0	69.0	40.5
Merged-chr13-24791504-4	chr13	24791011	24792011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-10146.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95754931-4	chr3	95754414	95755414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163618)	promoter-TSS (NM_001163618)	63.0	NR_151589	71807.0	Mm.271754	NM_027931	ENSMUSG00000028107	Tars2	2610024N01Rik|AI429208|Tarsl1|thrRS	threonyl-tRNA synthetase 2, mitochondrial (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25428577-4	chr2	25428066	25429066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007379)	promoter-TSS (NM_007379)	-108.0	NM_007379	11305.0	Mm.2210	NM_007379	ENSMUSG00000026944	Abca2	AI413825|Abc2|D2H0S1474E|mKIAA1062	ATP-binding cassette, sub-family A (ABC1), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138264016-4	chr5	138263517	138264517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153161)	promoter-TSS (NM_153161)	-28.0	NR_045821	69004.0	Mm.439868	NR_045821	ENSMUSG00000085227	6330418K02Rik	-	RIKEN cDNA 6330418K02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21601291-4	chr9	21600787	21601787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7042.0	NR_003372	666043.0	Mm.247282	NR_003372		Gm7904	EG666043	predicted gene 7904	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134924586-4	chr4	134924124	134925124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023665, intron 2 of 4)	intron (NM_023665, intron 2 of 4)	999.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-176828184-4	chr1	176827709	176828709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 3 of 18)	intron (NM_001357390, intron 3 of 18)	7924.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	73.5	182.5	163.0	36.0	158.5	86.0
Merged-chr1-154034315-4	chr1	154033809	154034809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134380.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-133091824-4	chr3	133091314	133092314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027927)	promoter-TSS (NM_027927)	11.0	NM_026231	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-68258164-4	chr15	68257655	68258655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152182, intron 1 of 13)	intron (NR_152182, intron 1 of 13)	701.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180678830-4	chr2	180678349	180679349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111965, intron 5 of 12)	intron (NR_111965, intron 5 of 12)	13199.0	NR_111965	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105854977-4	chr8	105854477	105855477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021513)	promoter-TSS (NM_021513)	-126.0	NM_021513	59016.0	Mm.286598	NM_021513	ENSMUSG00000036442	Thap11	2810036E22Rik|AB041579|CTG-B43a|CTG-B45d|Ronin	THAP domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98645527-2	chr15	98645027	98646027	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001044741)	TTS (NM_001044741)	10760.0	NM_001286226	12297.0	Mm.3544	NM_007581	ENSMUSG00000003352	Cacnb3	Beta3|CAB3|Ca(v)beta3|Cchb3	calcium channel, voltage-dependent, beta 3 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112530002-4	chr13	112529472	112530472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139299, intron 14 of 16)	intron (NM_139299, intron 14 of 16)	50690.0	NM_139299	218624.0	Mm.380801	NM_139299	ENSMUSG00000050377	Il31ra	CRL3|GLM-R|GPL|Glmr|NR10	interleukin 31 receptor A	protein-coding	4.0	28.0	16.0	11.5	24.0	17.5
Merged-chr10-16652591-4	chr10	16652091	16653091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC|LINE|L1	443191.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-93772207-4	chr13	93771707	93772707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009712, intron 1 of 7)	intron (NM_009712, intron 1 of 7)	528.0	NM_009712	11881.0	Mm.300178	NM_009712	ENSMUSG00000042082	Arsb	1110007C02Rik|AI480648|As-1|As-1r|As-1s|As-1t|As1|As1-r|As1-s|As1-t|Asr-1|Ast-1	arylsulfatase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116598233-4	chr3	116597781	116598781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030016, intron 1 of 11)	intron (NM_030016, intron 1 of 11)	3323.0	NM_001289571	72776.0	Mm.440836	NM_028349	ENSMUSG00000027959	Sass6	2810453L12Rik	SAS-6 centriolar assembly protein	protein-coding	3.5	14.5	8.0	3.5	14.5	8.0
Merged-chr8-13501397-4	chr8	13500892	13501892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-6857.0	NM_019521	14456.0	Mm.3982	NM_019521	ENSMUSG00000031451	Gas6	Gas-6	growth arrest specific 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115319848-4	chr5	115319347	115320347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131932, exon 2 of 2)	non-coding (NR_131932, exon 2 of 2)	-7330.0	NM_025573	108014.0	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	0.0	1.5	0.0	2.0	0.0	3.5
Merged-chr2-93457916-4	chr2	93457406	93458406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040532, intron 2 of 4)	intron (NR_040532, intron 2 of 4)	3945.0	NM_001271461	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	27.5	46.0	76.5	32.5	58.5	61.0
Merged-chr5-113783863-4	chr5	113783361	113784361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11049.0	NM_025526	66383.0	Mm.29497	NM_025526	ENSMUSG00000025825	Iscu	2310020H20Rik|AA407971|Nifu|Nifun	iron-sulfur cluster assembly enzyme	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154294934-2	chr2	154294434	154295434	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	-12310.0	NM_001025574	433492.0	Mm.330682	NM_001025574	ENSMUSG00000067996	Bpifb9b	5430413K10Rik|AI413838	BPI fold containing family B, member 9B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114229965-4	chr11	114229482	114230482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_A_Mam|LINE|RTE-X	31724.0	NR_045930	73536.0	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97315713-4	chr11	97315195	97316195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025927)	promoter-TSS (NM_025927)	-21.0	NM_025927	67036.0	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	0.0	0.0	0.5	0.5	0.5	3.0
Merged-chr11-32588298-1	chr11	32587798	32588798	+	1000.0	f1_balb.idr	intron (NM_009288, intron 5 of 18)	intron (NM_009288, intron 5 of 18)	-54257.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	2.0	0.0	0.0	0.0	0.0	2.5
Merged-chr7-24904267-4	chr7	24903772	24904772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130152)	promoter-TSS (NM_001130152)	-74.0	NM_001130152	16801.0	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14631769-4	chr2	14631233	14632233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023116, intron 2 of 13)	intron (NM_023116, intron 2 of 13)	27427.0	NM_023116	12296.0	Mm.313930	NM_023116	ENSMUSG00000057914	Cacnb2	AW060387|CAB2|Cavbeta2|Cchb2	calcium channel, voltage-dependent, beta 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32541486-4	chr11	32540978	32541978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	MLT1A0|LTR|ERVL-MaLR	8212.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	44.5	123.0	85.0	40.0	78.5	58.5
Merged-chr5-130283217-4	chr5	130282709	130283709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153350, exon 9 of 16)	non-coding (NR_153350, exon 9 of 16)	26172.0	NM_001015876	100929.0	Mm.271296	NM_178897	ENSMUSG00000056310	Tyw1	AW125391|Rsafd1	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20494715-2	chr13	20494215	20495215	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198093, intron 1 of 6)	intron (NM_198093, intron 1 of 6)	21725.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90274698-4	chr9	90274183	90275183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3914.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	88.0	212.5	151.5	93.0	191.5	144.5
Merged-chr11-106957572-4	chr11	106957062	106958062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36847.0	NM_025481	66313.0	Mm.340955	NM_025481	ENSMUSG00000018363	Smurf2	2810411E22Rik|AI558114|AI649275	SMAD specific E3 ubiquitin protein ligase 2	protein-coding	12.0	5.5	20.0	21.0	24.0	14.5
Merged-chr13-47190158-4	chr13	47189674	47190674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 1 of 7)	intron (NM_146042, intron 1 of 7)	-3829.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51276221-4	chr3	51275729	51276729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073429)	promoter-TSS (NR_073429)	-532.0	NR_073429	67746.0	Mm.441177	NR_073429	ENSMUSG00000087440	4930577N17Rik	-	RIKEN cDNA 4930577N17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61648598-4	chr10	61648112	61649112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026438)	promoter-TSS (NM_026438)	-9.0	NM_026438	67895.0	Mm.28897	NM_026438	ENSMUSG00000020089	Ppa1	2010317E03Rik|Pyp	pyrophosphatase (inorganic) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83604828-4	chr11	83604320	83605320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 2 of 8)	intron (NR_036453, intron 2 of 8)	-11733.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79619213-4	chr2	79618716	79619716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16209.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	7.5	9.5	6.0	4.0	28.5	30.0
Merged-chr12-71055692-4	chr12	71055191	71056191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081195, intron 11 of 23)	intron (NM_001081195, intron 11 of 23)	39724.0	NM_001081195	238247.0	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16250937-4	chr7	16250445	16251445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001173550, intron 1 of 1)	URR1B|DNA|hAT-Charlie	-6791.0	NM_176912	319430.0	Mm.239570	NM_176912	ENSMUSG00000074361	C5ar2	C5L2|E030029A11Rik|Gpr77	complement component 5a receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117148529-4	chr10	117148010	117149010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177798)	promoter-TSS (NM_177798)	-36.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-37617560-4	chr6	37617047	37618047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87374.0	NM_145364	208665.0	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92658761-3	chr1	92658255	92659255	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-9914.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43492950-4	chr4	43492455	43493455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037913)	promoter-TSS (NM_001037913)	104.0	NR_001460	19782.0		NR_001460	ENSMUSG00000088088	Rmrp	1110032O22Rik|Rmrpr	RNA component of mitochondrial RNAase P	ncRNA	48.0	97.5	107.0	66.5	134.5	120.5
Merged-chr10-99269380-2	chr10	99268880	99269880	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6149.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-53191327-4	chr2	53190832	53191832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022989)	promoter-TSS (NM_022989)	-145.0	NM_018785	56194.0	Mm.257474	NM_018785	ENSMUSG00000061136	Prpf40a	2810012K09Rik|FBP-11|FBP11|Fnbp11|Fnbp3	pre-mRNA processing factor 40A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129199546-2	chr2	129199046	129200046	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001159593, exon 2 of 6)	5' UTR (NM_001159593, exon 2 of 6)	773.0	NM_001159593	20515.0	Mm.272675	NM_015747	ENSMUSG00000027397	Slc20a1	AI607883|Glvr-1|Glvr1	solute carrier family 20, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32432518-2	chr18	32432018	32433018	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 17 of 17)	intron (NM_001360876, intron 17 of 17)	-54234.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60935477-4	chr11	60934978	60935978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008928, intron 1 of 11)	intron (NM_008928, intron 1 of 11)	3421.0	NM_008928	26397.0	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-71807500-4	chr12	71807018	71808018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD2|LINE|L1	-23550.0	NM_026102	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46842802-4	chr8	46842290	46843290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 6 of 7)	intron (NR_152560, intron 6 of 7)	103045.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-100670600-4	chr6	100670097	100671097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181590, intron 1 of 10)	CpG	560.0	NM_181590	72171.0	Mm.256022	NM_181590	ENSMUSG00000035378	Shq1	2810403P18Rik|Grim-1	SHQ1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141476384-4	chr7	141475888	141476888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252588)	promoter-TSS (NM_001252588)	8.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88066127-4	chr17	88065636	88066636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081034)	promoter-TSS (NM_001081034)	-845.0	NM_001081034	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99376994-2	chr7	99376494	99377494	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4524.0	NM_001362168	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22859317-4	chr8	22858839	22859839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081149)	promoter-TSS (NM_001081149)	-200.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91648261-4	chr16	91647733	91648733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019973, intron 1 of 4)	CpG-5863	409.0	NM_178880	20658.0	Mm.46401	NM_019973	ENSMUSG00000022961	Son	2900011L12Rik|AA409051|AU067731|C81487|mKIAA1019|nrebp	Son DNA binding protein	protein-coding	13.0	78.5	63.5	14.0	69.0	68.5
Merged-chr17-5454418-4	chr17	5453905	5454905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14145.0	NM_027457	70544.0	Mm.46654	NM_027457	ENSMUSG00000004945	Tmem242	1110008A10Rik|2310046K16Rik|5730437N04Rik	transmembrane protein 242	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-87675214-4	chr10	87674717	87675717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153422.0	NM_008777	18478.0	Mm.263539	NM_008777	ENSMUSG00000020051	Pah	AW106920	phenylalanine hydroxylase	protein-coding	2.5	15.0	13.0	13.5	8.0	9.5
Merged-chr9-122115730-2	chr9	122115230	122116230	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1536.0	NM_001164572	20623.0	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-91137564-4	chr10	91137081	91138081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13618.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8942439-3	chr19	8941942	8942942	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_144872)	TTS (NM_144872)	522.0	NM_011842	23942.0	Mm.25339	NM_011842	ENSMUSG00000071646	Mta2	AW550797|Mata1l1|Mta1l1|mmta2	metastasis-associated gene family, member 2	protein-coding	77.0	221.0	135.5	62.5	195.5	139.0
Merged-chr6-54992972-4	chr6	54992468	54993468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026637)	promoter-TSS (NM_026637)	-101.0	NM_026637	110175.0	Mm.294708	NM_026637	ENSMUSG00000002797	Ggct	A030007L17Rik|AA673177|Gctg|Ggc	gamma-glutamyl cyclotransferase	protein-coding	19.0	26.0	37.0	19.5	55.0	42.5
Merged-chr16-33958812-2	chr16	33958312	33959312	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348087, intron 4 of 4)	intron (NM_001348087, intron 4 of 4)	8226.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98361428-4	chr7	98360912	98361912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168539)	promoter-TSS (NM_001168539)	-84.0	NM_001168539	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	13.5	9.5	19.5	9.0	21.0	17.0
Merged-chr5-64360767-4	chr5	64360264	64361264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	107178.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	6.5	0.0	10.5	0.0	2.5	4.5
Merged-chr5-121586647-4	chr5	121586124	121587124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009656, intron 1 of 12)	intron (NM_009656, intron 1 of 12)	7200.0	NM_009656	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73731057-4	chr15	73730559	73731559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	6129.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-5083170-4	chr1	5082677	5083677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310442)	promoter-TSS (NM_001310442)	91.0	NM_001310442	108664.0	Mm.27082	NM_133826	ENSMUSG00000033793	Atp6v1h	0710001F19Rik|AU022349|CGI-11|SFD|SFDalpha|SFDbeta|VMA13	ATPase, H+ transporting, lysosomal V1 subunit H	protein-coding	95.0	187.5	224.0	114.5	192.0	167.5
Merged-chr12-87266739-4	chr12	87266233	87267233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142580)	promoter-TSS (NM_001142580)	5.0	NM_146036	217737.0	Mm.22626	NM_146036	ENSMUSG00000021037	Ahsa1	BC023857|p38	AHA1, activator of heat shock protein ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32311972-4	chr18	32311486	32312486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65231.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129713798-4	chr6	129713292	129714292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012520, intron 1 of 5)	intron (NM_001012520, intron 1 of 5)	3340.0	NM_001012520	503550.0	Mm.376476	NM_001012520	ENSMUSG00000067610	Klri1	-	killer cell lectin-like receptor family I member 1	protein-coding	24.5	63.0	34.0	35.5	66.0	32.0
Merged-chr11-69759485-4	chr11	69758986	69759986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291068)	promoter-TSS (NM_001291068)	-853.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	75.5	179.5	143.0	59.5	180.0	120.5
Merged-chr1-36308211-4	chr1	36307740	36308740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290727, intron 1 of 5)	intron (NM_001290727, intron 1 of 5)	507.0	NM_001172205	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95043099-4	chr3	95042610	95043610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008951)	promoter-TSS (NM_008951)	-496.0	NM_008951	19185.0	Mm.2261	NM_008951	ENSMUSG00000005625	Psmd4	Af1|Mcb1|angiocidin	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	protein-coding	18.0	71.0	64.5	37.5	59.5	45.5
Merged-chr5-123945455-3	chr5	123944952	123945952	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134767, intron 5 of 12)	intron (NM_001134767, intron 5 of 12)	14763.0	NM_001134767	208908.0	Mm.243679	NM_001134767	ENSMUSG00000061882	Ccdc62	AI661708|G1-485-3|Gm150|repro29	coiled-coil domain containing 62	protein-coding	0.0	2.0	0.5	1.0	2.5	4.5
Merged-chr2-32535215-4	chr2	32534702	32535702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153560)	promoter-TSS (NM_153560)	-157.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-85154151-4	chr6	85153652	85154652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16388.0	NM_011467	20751.0	Mm.28393	NM_011467	ENSMUSG00000033735	Spr	AA409688|Gm10328	sepiapterin reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82032813-4	chr11	82032319	82033319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2758.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45575830-2	chr17	45575330	45576330	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2569.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	1.0	1.0	0.0	1.0	1.0	0.0
Merged-chr11-72961340-2	chr11	72960840	72961840	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001163336, exon 1 of 21)	5' UTR (NM_001163336, exon 1 of 21)	171.0	NM_001163337	53313.0	Mm.6306	NM_016745	ENSMUSG00000020788	Atp2a3	SERCA3b|Serca3	ATPase, Ca++ transporting, ubiquitous	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128549268-4	chr10	128548771	128549771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018860)	promoter-TSS (NM_018860)	-103.0	NM_018860	67945.0	Mm.290786	NM_018860	ENSMUSG00000093674	Rpl41	1810055P16Rik|2210411K19Rik	ribosomal protein L41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35124456-4	chr9	35123940	35124940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027030)	TTS (NM_027030)	-7576.0	NM_009178	20443.0	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	SIAT4-C|ST3Gal IV|ST3GalIV|Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-164275633-4	chr1	164275132	164276132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029115)	promoter-TSS (NM_029115)	34.0	NM_029115	74895.0	Mm.167258	NM_029115	ENSMUSG00000026578	Ccdc181	4930455F23Rik|AI427889	coiled-coil domain containing 181	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29547831-4	chr11	29547321	29548321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028504)	promoter-TSS (NM_028504)	-129.0	NM_028504	73324.0	Mm.69388	NM_028504	ENSMUSG00000020461	Clhc1	1700034F02Rik	clathrin heavy chain linker domain containing 1	protein-coding	3.0	32.0	33.5	25.5	38.5	27.0
Merged-chr10-117323963-4	chr10	117323450	117324450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31082.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	2.0	5.0	8.5	2.5	10.0	9.5
Merged-chr2-27540298-4	chr2	27539791	27540791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	25144.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136808847-4	chr6	136808327	136809327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177688, exon 1 of 1)	3' UTR (NM_177688, exon 1 of 1)	579.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	340.0	693.5	517.0	297.0	713.5	509.5
Merged-chr2-156864505-4	chr2	156864025	156865025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026124, intron 1 of 3)	B4A|SINE|B4	1403.0	NM_026124	67388.0	Mm.29264	NM_026124	ENSMUSG00000027637	1110008F13Rik	AI316789	RIKEN cDNA 1110008F13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-33315411-4	chr12	33314922	33315922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033436, intron 1 of 7)	intron (NM_001033436, intron 1 of 7)	12907.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103172854-4	chr3	103172370	103173370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356330, intron 2 of 5)	RCHARR1|DNA|hAT-Charlie	1215.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87849499-4	chr1	87848975	87849975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3812.0	NM_177646	227333.0	Mm.277217	NM_177646	ENSMUSG00000070738	Dgkd	AI841987|D330025K09|DGKdelta|dgkd-2	diacylglycerol kinase, delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146299652-4	chr5	146299153	146300153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359990, intron 11 of 12)	intron (NM_001359990, intron 11 of 12)	68403.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	8.0	6.5	2.0	2.0	2.0	1.0
Merged-chr18-56466632-4	chr18	56466138	56467138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	34506.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	35.0	55.0	30.5	40.5	53.5	35.5
Merged-chr11-97127235-4	chr11	97126705	97127705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11874.0	NM_019507	57765.0	Mm.94519	NM_019507	ENSMUSG00000001444	Tbx21	TBT1|Tbet|Tblym	T-box 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102247150-4	chr15	102246640	102247640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042727)	promoter-TSS (NM_001042727)	-640.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	7.5	43.5	30.5	21.0	59.5	17.5
Merged-chr8-18846928-4	chr8	18846435	18847435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026792, intron 1 of 7)	CpG	656.0	NM_026792	52123.0	Mm.24117	NM_026792	ENSMUSG00000031467	Agpat5	1110013A05Rik|D8Ertd319e	1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29436072-2	chr17	29435572	29436572	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-54973.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	25.0	121.5	54.0	7.0	98.0	42.0
Merged-chr1-60580058-4	chr1	60579559	60580559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR1b|LTR|Gypsy	-13294.0	NM_001045513	77300.0	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111805897-4	chr13	111805419	111806419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	3074.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	86.0	203.0	170.5	62.0	175.0	94.0
Merged-chr9-21616585-1	chr9	21616085	21617085	+	1000.0	f0_c57.idr	intron (NM_001357764, intron 1 of 34)	CpG	416.0	NM_001174078	20586.0	Mm.286593	NM_011417	ENSMUSG00000032187	Smarca4	BAF190A|Brg1|HP1-BP72|SNF2beta|SW1/SNF|b2b508.1Clo|b2b692Clo	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-104109643-4	chr13	104109151	104110151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029447)	promoter-TSS (NM_029447)	-37.0	NM_029447	75805.0	Mm.127692	NM_029447	ENSMUSG00000021710	Nln	4930472G13Rik|C79345	neurolysin (metallopeptidase M3 family)	protein-coding	42.5	123.5	127.5	28.5	107.0	113.5
Merged-chr10-8065892-4	chr10	8065404	8066404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109781.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	3.0	9.0	3.0	19.0	6.5	7.5
Merged-chr1-34466551-2	chr1	34466051	34467051	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011206, intron 5 of 14)	B3A|SINE|B2	6805.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9646555-1	chr4	9646055	9647055	+	1000.0	f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	-2838.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	20.0	18.5	21.0	14.0	19.0	15.5
Merged-chr3-89385695-2	chr3	89385195	89386195	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001355206, exon 2 of 4)	exon (NM_001355206, exon 2 of 4)	1976.0	NM_001355212	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118594664-4	chr14	118594137	118595137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163676, intron 18 of 29)	intron (NM_001163676, intron 18 of 29)	-2165.0	NR_105815	102465208.0		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	6.5	35.0	27.5	33.0	40.0	96.0
Merged-chr19-33120533-3	chr19	33120038	33121038	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36574.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32953977-4	chr12	32953495	32954495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_044986)	promoter-TSS (NR_044986)	50.0	NM_013635	19027.0	Mm.246304	NM_013635	ENSMUSG00000020570	Sypl	AI314763|AI604763|D12Ertd446e|PanI|Pphn|Sypl1	synaptophysin-like protein	protein-coding	28.0	42.0	26.5	37.5	40.5	40.0
Merged-chr12-102445643-4	chr12	102445152	102446152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5839.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	21.0	72.0	59.0	27.0	63.5	49.5
Merged-chr7-13023260-4	chr7	13022767	13023767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011588)	promoter-TSS (NM_011588)	-885.0	NM_011588	21849.0	Mm.15701	NM_011588	ENSMUSG00000005566	Trim28	AA408787|KAP-1|KRIP-1|MommeD9|Tif1b|Tif1beta	tripartite motif-containing 28	protein-coding	4.5	13.0	5.5	0.0	10.0	8.0
Merged-chr2-73397122-4	chr2	73396628	73397628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10648.0	NM_001276444	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86114404-4	chr17	86113914	86114914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030133, intron 10 of 20)	Lx8|LINE|L1	30761.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-117020727-4	chr13	117020225	117021225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	4791.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-21953077-4	chr3	21952584	21953584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123568.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57921568-4	chr15	57921077	57922077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081396, intron 3 of 20)	Lx9|LINE|L1	9378.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103333889-4	chr15	103333377	103334377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013866, intron 1 of 7)	intron (NM_013866, intron 1 of 7)	461.0	NM_001356627	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-55380206-4	chr15	55379703	55380703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181277, intron 10 of 47)	intron (NM_181277, intron 10 of 47)	72453.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25787121-4	chr7	25786617	25787617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 2 of 19)	MIR|SINE|MIR	1616.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-8672195-4	chr16	8671699	8672699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025821)	promoter-TSS (NM_025821)	-46.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117192908-2	chr11	117192408	117193408	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B2|LTR|ERVL	-6753.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25788774-4	chr7	25788265	25789265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190974)	promoter-TSS (NM_001190974)	-32.0	NM_001190975	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86833936-4	chr12	86833450	86834450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50864.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164877971-3	chr2	164877484	164878484	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1384.0	NM_146129	228866.0	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	15.5	32.5	24.0	4.0	23.5	7.5
Merged-chr2-91976206-2	chr2	91975709	91976709	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12646.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	5.0	0.0	2.0	0.0	0.5	0.0
Merged-chr3-89350054-4	chr3	89349566	89350566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009614)	promoter-TSS (NM_009614)	-38.0	NM_009614	11490.0	Mm.274049	NM_009614	ENSMUSG00000028041	Adam15	AD56|MDC15	a disintegrin and metallopeptidase domain 15 (metargidin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118868949-4	chr9	118868439	118869439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 9 of 13)	intron (NM_001113514, intron 9 of 13)	-57597.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	22.5	59.0	31.0	24.0	61.0	17.5
Merged-chr11-83064142-4	chr11	83063641	83064641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011408)	promoter-TSS (NM_011408)	-971.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115190561-4	chr11	115190050	115191050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033393, intron 2 of 9)	RMER17C2|LTR|ERVK	3063.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	266.5	753.5	441.5	191.0	466.0	289.5
Merged-chr17-26538241-4	chr17	26537746	26538746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23266.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	91.0	188.5	150.0	48.5	120.5	90.5
Merged-chr7-133636907-4	chr7	133636408	133637408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178115)	promoter-TSS (NM_178115)	-767.0	NM_178115	214764.0	Mm.174044	NM_145995	ENSMUSG00000039990	Edrf1	2700050L05Rik|AU022667|AW558805	erythroid differentiation regulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49252317-4	chr13	49251806	49252806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-3600.0	NM_028340	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63612165-4	chr9	63611678	63612678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	9532.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45555610-4	chr17	45555106	45556106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304956)	promoter-TSS (NM_001304956)	-94.0	NM_008690	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	33.5	63.5	50.5	37.0	172.0	80.0
Merged-chr10-98744347-4	chr10	98743853	98744853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-170289.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-127240138-4	chr1	127239631	127240631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	35145.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116178342-4	chr9	116177836	116178836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2973.0	NM_029575	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9033970-4	chr3	9033464	9034464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28000.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	47.5	131.0	73.0	12.0	49.5	40.0
Merged-chr11-79253367-4	chr11	79252873	79253873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019653, intron 1 of 8)	intron (NM_019653, intron 1 of 8)	1322.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32162414-2	chr16	32161914	32162914	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_146069, exon 2 of 4)	5' UTR (NM_146069, exon 2 of 4)	3180.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-67845230-4	chr9	67844728	67845728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177184, intron 1 of 84)	intron (NM_177184, intron 1 of 84)	4832.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	17.5	23.5	15.5	10.5	36.0	29.5
Merged-chr15-73184545-4	chr15	73184046	73185046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	CpG	401.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137787772-4	chr5	137787271	137788271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005426)	promoter-TSS (NM_001005426)	-31.0	NM_001005426	381678.0	Mm.332765	NM_001005426	ENSMUSG00000037108	Zcwpw1	Gm1053	zinc finger, CW type with PWWP domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80061402-4	chr17	80060965	80061965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152119, intron 1 of 13)	CpG	803.0	NR_152119	72692.0	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57078558-4	chr17	57078071	57079071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153551)	promoter-TSS (NM_153551)	-61.0	NM_153551	70785.0	Mm.284447	NM_153551	ENSMUSG00000002668	Dennd1c	4432409M07Rik	DENN/MADD domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126748221-2	chr8	126747721	126748721	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100799.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	9.0	54.5	34.5	10.5	25.5	34.0
Merged-chr2-126675330-9	chr2	126674859	126675859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355109)	promoter-TSS (NM_001355109)	-7.0	NM_001355109	14391.0	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-103108599-1	chr9	103108099	103109099	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-3475.0	NM_173781	270192.0	Mm.490252	NM_173781	ENSMUSG00000032549	Rab6b	9630015C03|AI844641|C330006L04Rik|D9Bwg0185e	RAB6B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121586148-4	chr10	121585667	121586667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019786, intron 1 of 20)	intron (NM_019786, intron 1 of 20)	627.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	80.0	90.5	63.0	65.0	60.0	60.5
Merged-chr9-96391495-4	chr9	96390972	96391972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27041.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	6.0	19.5	14.0	12.5	19.5	15.0
Merged-chr4-150078816-4	chr4	150078328	150079328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8675.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-10288708-4	chr3	10288180	10289180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029310, intron 1 of 5)	RMER17D2|LTR|ERVK	12503.0	NM_001357159	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	7.0	11.0	3.0	7.0	5.5	4.0
Merged-chr2-155729459-4	chr2	155728940	155729940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145537)	promoter-TSS (NM_145537)	35.0	NM_145537	108687.0	Mm.273706	NM_145537	ENSMUSG00000038312	Edem2	9530090G24Rik|AI327354	ER degradation enhancer, mannosidase alpha-like 2	protein-coding	20.0	55.5	39.0	12.5	55.0	36.0
Merged-chr2-29889664-4	chr2	29889154	29890154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177661)	promoter-TSS (NM_001177661)	-66.0	NM_001177661	18286.0	Mm.330116	NM_013615	ENSMUSG00000026790	Odf2	AI848335|MMTEST29	outer dense fiber of sperm tails 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-59312778-4	chr3	59312271	59313271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 42 of 43)	intron (NM_177855, intron 42 of 43)	31485.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	9.0	16.5	18.0	11.5	38.5	32.0
Merged-chr6-50299197-4	chr6	50298684	50299684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027881, intron 21 of 21)	intron (NM_027881, intron 21 of 21)	-37415.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	0.0	0.0	0.5	0.0	0.0	1.5
Merged-chr7-129528503-4	chr7	129528014	129529014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63349.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28236594-2	chr17	28236094	28237094	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 1 of 7)	intron (NM_011145, intron 1 of 7)	3840.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124576224-4	chr2	124575722	124576722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-34074.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19149797-4	chr7	19149271	19150271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026111)	promoter-TSS (NM_026111)	-67.0	NM_026943	107686.0	Mm.29135	NM_026943	ENSMUSG00000040824	Snrpd2	1810009A06Rik|SMD2	small nuclear ribonucleoprotein D2	protein-coding	7.0	18.0	21.5	3.5	13.5	3.0
Merged-chr8-71310588-4	chr8	71310063	71311063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	RLTR17|LTR|ERVK	37849.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	36.5	74.5	40.5	36.0	86.5	47.0
Merged-chr2-124753844-4	chr2	124753335	124754335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	100254.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-9048541-4	chr11	9048022	9049022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037928)	promoter-TSS (NM_001037928)	-70.0	NM_001037928	626870.0	Mm.369429	NM_001037928	ENSMUSG00000040978	Gm11992	-	predicted gene 11992	protein-coding	0.0	0.0	3.5	0.5	1.0	0.0
Merged-chr6-120357421-4	chr6	120356900	120357900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026028)	promoter-TSS (NM_026028)	69.0	NM_026028	67200.0	Mm.45767	NM_026028	ENSMUSG00000030177	Ccdc77	2400002C23Rik|2700091N06Rik|AV168274	coiled-coil domain containing 77	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164926384-1	chr2	164925884	164926884	+	1000.0	f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-14634.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	0.5	2.5	3.5	4.0	5.0	4.5
Merged-chr17-28257020-4	chr17	28256525	28257525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 2 of 7)	intron (NM_011145, intron 2 of 7)	-14683.0	NR_045427	69050.0	Mm.486938	NR_045427	ENSMUSG00000002250	1810013A23Rik	-	RIKEN cDNA 1810013A23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124112090-7	chr5	124111602	124112602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025671)	promoter-TSS (NM_025671)	-219.0	NM_001361482	66627.0	Mm.7050	NM_025671	ENSMUSG00000023707	Ogfod2	1300006G11Rik|5730405M13Rik|AU041636|AW552395	2-oxoglutarate and iron-dependent oxygenase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19084658-4	chr7	19084145	19085145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032418, intron 1 of 14)	intron (NM_032418, intron 1 of 14)	796.0	NM_001190491	13400.0	Mm.6529	NM_032418	ENSMUSG00000030409	Dmpk	DM|DMK|Dm15|MDPK|MT-PK	dystrophia myotonica-protein kinase	protein-coding	11.0	31.0	17.5	3.5	46.5	14.5
Merged-chr2-11501458-4	chr2	11500943	11501943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	CpG	647.0	NM_001177754	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36727706-4	chr18	36727195	36728195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009841)	promoter-TSS (NM_009841)	-880.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80583095-4	chr7	80582621	80583621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48002.0	NM_001042527	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	55.5	157.0	75.0	24.0	41.5	48.0
Merged-chr7-27167171-4	chr7	27166679	27167679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053208)	promoter-TSS (NM_053208)	-377.0	NM_053208	112406.0	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84762783-4	chr18	84762279	84763279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	18712.0	NR_155706	102641800.0		NR_155706		Gm38576	-	predicted gene, 38576	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31169562-4	chr6	31169050	31170050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	48924.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89277783-4	chr6	89277291	89278291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131021, intron 1 of 3)	intron (NR_131021, intron 1 of 3)	7934.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-83688635-4	chr12	83688138	83689138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008943)	promoter-TSS (NM_008943)	75.0	NM_008943	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-53998369-4	chr5	53997865	53998865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081103)	promoter-TSS (NM_001081103)	-158.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39527476-4	chr6	39526963	39527963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172477, intron 1 of 18)	intron (NM_172477, intron 1 of 18)	30371.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85647498-4	chr12	85646988	85647988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-39232.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81523415-4	chr15	81522924	81523924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57108.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-88955474-4	chr11	88954986	88955986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029023)	promoter-TSS (NM_029023)	-44.0	NM_029023	74617.0	Mm.34126	NM_029023	ENSMUSG00000000278	Scpep1	2410018F01Rik|4833411K15Rik|AI957256|Risc	serine carboxypeptidase 1	protein-coding	307.0	494.5	374.0	144.0	320.0	265.0
Merged-chr5-101959640-4	chr5	101959152	101960152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 6 of 66)	intron (NM_172882, intron 6 of 66)	110269.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	2.5	10.5	7.5	4.0	7.5	6.0
Merged-chr9-107575712-2	chr9	107575212	107576212	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1215.0	NM_008317	15586.0	Mm.475658	NM_008317	ENSMUSG00000010051	Hyal1	Hya1|Hyal-1	hyaluronoglucosaminidase 1	protein-coding	0.0	0.0	2.0	2.5	0.0	0.0
Merged-chr14-70075589-4	chr14	70075131	70076131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1814.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144009663-4	chr2	144009167	144010167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	1596.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6339223-2	chr19	6338723	6339723	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168490, intron 7 of 7)	intron (NM_001168490, intron 7 of 7)	-1937.0	NM_009006	26412.0	Mm.25860	NM_009006	ENSMUSG00000024948	Map4k2	AI385662|BL44|GCK|Rab8ip	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-69416298-4	chr18	69415795	69416795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	70135.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	49.5	103.0	74.5	45.0	116.0	73.0
Merged-chr1-45861781-4	chr1	45861295	45862295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63799.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123769646-4	chr9	123769142	123770142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009913, intron 1 of 2)	intron (NM_009913, intron 1 of 2)	2431.0	NM_001166625	12769.0	Mm.440604	NM_009913	ENSMUSG00000029530	Ccr9	A130091K22Rik|Cmkbr10|GPR-9-6	chemokine (C-C motif) receptor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-87718782-4	chr10	87718274	87719274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139491.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	20.0	72.5	29.5	20.0	66.0	30.5
Merged-chr6-72616791-4	chr6	72616295	72617295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009444)	promoter-TSS (NM_009444)	-47.0	NM_009444	22135.0	Mm.246563	NM_009444		Tgoln2	TGN38B|TGN41|TGN46|Ttgn2	trans-golgi network protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161520210-5	chr1	161519761	161520761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25604.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	11.0	79.5	35.5	22.5	70.5	27.0
Merged-chr16-3895678-4	chr16	3895190	3896190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153801, intron 3 of 3)	ORR1E|LTR|ERVL-MaLR	11071.0	NM_001290689	74763.0	Mm.28403	NM_029090	ENSMUSG00000005982	Naa60	1200013P24Rik|AI315146|HAT4|Nat15|NatF	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53082088-4	chr4	53081594	53082594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013454, exon 16 of 50)	exon (NM_013454, exon 16 of 50)	70214.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-9107502-4	chr5	9106992	9107992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081029, intron 2 of 4)	intron (NM_001081029, intron 2 of 4)	6755.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35439062-4	chr17	35438558	35439558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001201460)	promoter-TSS (NM_001201460)	-97.0	NM_010394	15018.0	Mm.431282	NM_010394	ENSMUSG00000060550	H2-Q7	H-2Q7|Ped|Q9|Qa-2|Qa-7|Qa7	histocompatibility 2, Q region locus 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-129887420-4	chr5	129886913	129887913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024166)	promoter-TSS (NM_024166)	57.0	NM_024166	14004.0	Mm.30133	NM_024166	ENSMUSG00000070493	Chchd2	AL033347|Etohi6	coiled-coil-helix-coiled-coil-helix domain containing 2	protein-coding	36.5	117.5	103.5	70.0	187.0	127.0
Merged-chr11-94390109-2	chr11	94389609	94390609	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 1 of 30)	MIRc|SINE|MIR	2867.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20152137-2	chr11	20151637	20152637	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-39186.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr19-34878061-4	chr19	34877566	34878566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023792)	promoter-TSS (NM_023792)	-149.0	NM_023792	75735.0	Mm.24742	NM_023792	ENSMUSG00000033610	Pank1	Pank|Pank1b	pantothenate kinase 1	protein-coding	3.0	21.5	18.0	18.0	9.0	18.5
Merged-chr4-53080379-4	chr4	53079857	53080857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 17 of 49)	MIRb|SINE|MIR	68477.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31061452-4	chr3	31060960	31061960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22494.0	NR_105975	102465610.0		NR_105975	ENSMUSG00000098890	Mir7008	Gm27752|mmu-mir-7008	microRNA 7008	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91183675-4	chr12	91183163	91184163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181815, intron 20 of 25)	intron (NM_181815, intron 20 of 25)	73434.0	NR_030473	735273.0		NR_030473	ENSMUSG00000076118	Mir669c	Mirn669c|Mirn669c-1	microRNA 669c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139791465-4	chr5	139790981	139791981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010757)	promoter-TSS (NM_010757)	-55.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	15.0	54.5	27.0	10.0	20.5	24.5
Merged-chr2-60855211-4	chr2	60854744	60855744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	26194.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137633511-2	chr5	137633011	137634011	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033148, intron 1 of 21)	intron (NR_033148, intron 1 of 21)	4388.0	NR_033148	100316903.0	Mm.200763	NR_033148		Gm20605	Lrch4-sap25	predicted gene 20605	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-111122762-4	chr7	111122240	111123240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015573)	promoter-TSS (NR_015573)	-65.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57280583-4	chr17	57280084	57281084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 1 of 25)	intron (NM_001163816, intron 1 of 25)	1484.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	60.5	73.0	88.5	62.0	101.0	52.5
Merged-chr9-21715460-4	chr9	21714951	21715951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8125.0	NM_001252658	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45270229-4	chr2	45269729	45270729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-152787.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-113378104-4	chr7	113377605	113378605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-8766.0	NM_133700	68815.0	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116274166-4	chr11	116273655	116274655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146032)	promoter-TSS (NM_146032)	62.0	NM_146032	217337.0	Mm.29655	NM_146032	ENSMUSG00000020780	Srp68	2610024I03Rik	signal recognition particle 68	protein-coding	30.0	101.0	67.5	27.0	64.0	62.0
Merged-chr16-92959166-2	chr16	92958666	92959666	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-133092.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79287699-4	chr11	79287192	79288192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32997.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	11.5	29.5	38.5	13.5	26.0	33.0
Merged-chr11-26640660-4	chr11	26640150	26641150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46730.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	73.0	148.0	93.5	65.0	166.5	114.5
Merged-chr17-26492676-1	chr17	26492176	26493176	+	1000.0	f1_balb.idr	Intergenic	Intergenic	15796.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.0	0.0	4.0	1.0	2.0	2.0
Merged-chr6-122571889-2	chr6	122571389	122572389	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	18080.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	20.0	94.5	52.0	19.5	72.0	41.0
Merged-chr1-183345465-4	chr1	183344972	183345972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177389, intron 6 of 26)	CpG	24093.0	NM_177389	338366.0	Mm.41152	NM_177389		Mia3	9130229H14Rik|A930039G15Rik|AU022327|B230399H06Rik|C80126|Gm1525|TANGO1|Tango	melanoma inhibitory activity 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130107508-4	chr4	130107014	130108014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026441)	promoter-TSS (NM_026441)	-42.0	NM_026441	67898.0	Mm.20818	NM_026441	ENSMUSG00000028779	Pef1	2600002E23Rik|Peflin	penta-EF hand domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41923645-7	chr10	41923123	41924123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 15 of 17)	B1_Mus2|SINE|Alu	36184.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152210916-4	chr3	152210401	152211401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356364)	promoter-TSS (NM_001356364)	479.0	NM_001355374	51886.0	Mm.278922	NM_057172	ENSMUSG00000028034	Fubp1	9530027K12Rik|D3Ertd330e|FBP|Fubp|Fubp4	far upstream element (FUSE) binding protein 1	protein-coding	115.0	332.5	293.5	96.0	285.5	249.5
Merged-chr17-33999651-4	chr17	33999122	34000122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001892, intron 2 of 7)	CpG-6270	711.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	255.5	696.0	397.0	32.5	84.0	51.0
Merged-chr4-141656332-4	chr4	141655825	141656825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	7790.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	73.0	181.0	113.0	38.0	125.0	53.0
Merged-chr2-52424913-4	chr2	52424425	52425425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182994)	promoter-TSS (NM_182994)	-51.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70410149-4	chr11	70409617	70410617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029231)	promoter-TSS (NM_029231)	-86.0	NM_029231	75273.0	Mm.340601	NM_029231	ENSMUSG00000018921	Pelp1	4930563C04Rik|MNAR	proline, glutamic acid and leucine rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124903796-4	chr6	124903299	124904299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008479)	TTS (NM_008479)	7906.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43559878-4	chr4	43559394	43560394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011602, intron 1 of 56)	intron (NM_011602, intron 1 of 56)	2689.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	49.0	83.0	60.5	12.5	103.5	72.5
Merged-chr17-62649788-4	chr17	62649291	62650291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010109, intron 2 of 3)	intron (NM_010109, intron 2 of 3)	231526.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141221841-4	chr7	141221334	141222334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029793)	promoter-TSS (NR_029793)	-341.0	NR_029793	387206.0		NR_029793	ENSMUSG00000065551	Mir210	Mirn210|mir-210|mmu-mir-210	microRNA 210	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20312951-4	chr10	20312474	20313474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025392, intron 1 of 12)	CpG	505.0	NM_001025393	72567.0	Mm.294783	NM_153787	ENSMUSG00000037608	Bclaf1	2610102K23Rik|2700025J07Rik|2810454G14Rik|5730534O06Rik|AI450190|AW556225|Btf|mKIAA0164	BCL2-associated transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65032390-4	chr9	65031924	65032924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028906)	promoter-TSS (NM_028906)	-34.0	NM_028906	74388.0	Mm.202749	NM_028906	ENSMUSG00000032393	Dpp8	2310004I03Rik|4932434F09Rik|AI666706|DPP VIII	dipeptidylpeptidase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102386314-2	chr12	102385814	102386814	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 8 of 9)	RSINE1|SINE|B4	53499.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-126770250-4	chr3	126769725	126770725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025439, intron 5 of 19)	intron (NM_001025439, intron 5 of 19)	173161.0	NM_001034168	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	21.0	94.5	37.5	15.0	40.5	25.0
Merged-chr6-57581006-4	chr6	57580510	57581510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025992)	promoter-TSS (NM_025992)	18.0	NM_025992	67138.0	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-65102226-4	chr14	65101713	65102713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4107.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93028878-4	chr16	93028361	93029361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-202787.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56612098-4	chr17	56611592	56612592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1303.0	NM_018730	54217.0	Mm.11376	NM_018730	ENSMUSG00000057863	Rpl36	-	ribosomal protein L36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79017480-4	chr12	79016990	79017990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10213.0	NM_178745	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	30.5	143.5	69.5	65.0	187.5	116.0
Merged-chr11-70654633-4	chr11	70654135	70655135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011072)	promoter-TSS (NM_011072)	15.0	NM_011072	18643.0	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	10.5	3.5	7.5	8.0	22.5	16.0
Merged-chr7-135914438-4	chr7	135913943	135914943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-198064.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19699133-4	chr7	19698595	19699595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009696)	promoter-TSS (NM_009696)	93.0	NM_001305843	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38483522-4	chr2	38483017	38484017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28180.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-140882352-4	chr7	140881855	140882855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177804)	promoter-TSS (NM_001177804)	-39.0	NM_011875	23997.0	Mm.29760	NM_011875	ENSMUSG00000025487	Psmd13	S11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-22022470-3	chr13	22021971	22022971	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Ser-TCG|tRNA|tRNA	-12730.0	NM_019429	54373.0	Mm.32043	NM_019429	ENSMUSG00000006179	Prss16	AI448615|TSSP	protease, serine 16 (thymus)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32067888-4	chr18	32067371	32068371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_173441, exon 1 of 14)	5' UTR (NM_173441, exon 1 of 14)	137.0	NM_173441	73473.0	Mm.66853	NM_173441	ENSMUSG00000024384	Iws1	1700069O15Rik|3000008H23|AL117927|AW214353	IWS1, SUPT6 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58408349-4	chr16	58407816	58408816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028523)	promoter-TSS (NM_028523)	-219.0	NM_001356484	73379.0	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110775407-2	chr5	110774907	110775907	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359219, intron 4 of 5)	intron (NM_001359219, intron 4 of 5)	4458.0	NR_152254	100504049.0	Mm.474515	NR_152254	ENSMUSG00000086401	Gm15559	-	predicted gene 15559	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31838281-7	chr16	31837808	31838808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357281, intron 13 of 22)	intron (NM_001357281, intron 13 of 22)	-40502.0	NM_013900	30060.0	Mm.30988	NM_013900	ENSMUSG00000022780	Meltf	CD228|MTf|Mfi2	melanotransferrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62542814-4	chr11	62542316	62543316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	-3555.0	NM_028448	73139.0	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39490283-2	chr18	39489783	39490783	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3038.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31177033-4	chr6	31176542	31177542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	41432.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-119388806-4	chr6	119388327	119389327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355692)	promoter-TSS (NM_001355692)	-93.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83634227-4	chr6	83633721	83634721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21895.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	11.5	8.0	15.5	27.0	25.0	31.0
Merged-chr6-84020214-4	chr6	84019714	84020714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310152, intron 1 of 53)	intron (NM_001310152, intron 1 of 53)	828.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-154596695-4	chr3	154596209	154597209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357674)	promoter-TSS (NM_001357674)	-2.0	NM_009968	12972.0	Mm.374855	NM_009968	ENSMUSG00000028199	Cryz	Sez9	crystallin, zeta	protein-coding	21.0	42.0	15.0	8.5	32.0	31.5
Merged-chr19-8967029-4	chr19	8966520	8967520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026007)	promoter-TSS (NM_026007)	-21.0	NM_026007	67160.0	Mm.247762	NM_026007	ENSMUSG00000071644	Eef1g	2610301D06Rik|AA407312|EF1G	eukaryotic translation elongation factor 1 gamma	protein-coding	3.5	29.0	5.5	8.0	5.5	6.0
Merged-chr5-105531539-1	chr5	105531039	105532039	+	1000.0	f0_balb.idr	intron (NM_133897, intron 1 of 3)	L1MEf|LINE|L1	12068.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	1.0	9.5	6.5	8.5	27.0	26.5
Merged-chr2-144301061-6	chr2	144300570	144301570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME4b|LINE|L1	30166.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141207404-2	chr4	141206904	141207904	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAGA)n|Simple_repeat|Simple_repeat	-6552.0	NM_001081174	76166.0	Mm.271064	NM_001081174	ENSMUSG00000073733	Rsg1	6330545A04Rik|Gm723|b2b2804Clo|b2b2827Clo	REM2 and RAB-like small GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164680070-4	chr2	164679552	164680552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-5055.0	NM_001012704	408190.0	Mm.376205	NM_001012704	ENSMUSG00000067704	Wfdc13	Wfdc13l1	WAP four-disulfide core domain 13	protein-coding	23.0	77.5	56.5	12.5	65.5	36.0
Merged-chr7-79935761-4	chr7	79935239	79936239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027420)	promoter-TSS (NM_027420)	-475.0	NM_027420	70420.0	Mm.34266	NM_027420	ENSMUSG00000039043	Arpin	2610034B18Rik	actin-related protein 2/3 complex inhibitor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-64618937-4	chr18	64618481	64619481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001488, intron 1 of 27)	intron (NM_001001488, intron 1 of 27)	42019.0	NM_001001488	54670.0	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	0.0	0.0	4.0	4.5	1.5	3.0
Merged-chr7-132575841-4	chr7	132575334	132576334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016978, intron 1 of 9)	intron (NM_016978, intron 1 of 9)	564.0	NM_016978	18242.0	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32571660-4	chr4	32571153	32572153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_026843)	promoter-TSS (NR_026843)	9.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	129.5	280.0	240.0	99.5	288.0	218.0
Merged-chr6-97806914-4	chr6	97806397	97807397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113198)	promoter-TSS (NM_001113198)	-161.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	3.0	16.0	8.0	11.5	21.5	6.0
Merged-chr5-34336300-4	chr5	34335799	34336799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011278)	promoter-TSS (NM_011278)	49.0	NM_011278	19822.0	Mm.21281	NM_011278	ENSMUSG00000029110	Rnf4	AU018689|Gtrgeo8|SNURF	ring finger protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-62854333-4	chr16	62853842	62854842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011173)	promoter-TSS (NM_011173)	35.0	NM_011173	19128.0	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-125735946-4	chr10	125735442	125736442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-230277.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-60790735-4	chr19	60790256	60791256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010123)	promoter-TSS (NM_010123)	-63.0	NM_010123	13669.0	Mm.2238	NM_010123	ENSMUSG00000024991	Eif3a	A830012B05Rik|Csma|Eif3|Eif3s10|mKIAA0139	eukaryotic translation initiation factor 3, subunit A	protein-coding	127.5	201.0	158.5	116.5	300.0	165.5
Merged-chr13-5862354-8	chr13	5861845	5862845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011803, intron 1 of 3)	intron (NM_011803, intron 1 of 3)	856.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34244895-4	chr10	34244409	34245409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37281.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101259333-4	chr15	101258821	101259821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-7525.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	14.5	19.0	15.0	14.5	32.5	18.5
Merged-chr7-144581758-4	chr7	144581371	144582371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010175, intron 1 of 1)	intron (NM_010175, intron 1 of 1)	565.0	NM_010175	14082.0	Mm.5126	NM_010175	ENSMUSG00000031077	Fadd	Mort1/FADD	Fas (TNFRSF6)-associated via death domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45342063-4	chr4	45341506	45342506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153167)	promoter-TSS (NM_153167)	-95.0	NM_153167	242418.0	Mm.317668	NM_153167	ENSMUSG00000035572	Dcaf10	AA959934|Wdr32	DDB1 and CUL4 associated factor 10	protein-coding	48.0	39.0	52.0	23.5	58.0	53.5
Merged-chr5-30647888-4	chr5	30647384	30648384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175675)	promoter-TSS (NM_175675)	-52.0	NR_049199	100885838.0		NR_049199	ENSMUSG00000093710	Mir5625	Gm23930|mmu-mir-5625	microRNA 5625	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34047130-4	chr11	34046637	34047637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010696, exon 1 of 21)	5' UTR (NM_010696, exon 1 of 21)	209.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99140327-4	chr9	99139824	99140824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029094)	promoter-TSS (NM_029094)	-113.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21406120-1	chr19	21405620	21406620	+	1000.0	f0_balb.idr	intron (NM_010266, intron 10 of 13)	intron (NM_010266, intron 10 of 13)	66541.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-24205880-4	chr18	24205377	24206377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160404)	promoter-TSS (NM_001160404)	-82.0	NM_001361200	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85977876-4	chr1	85977375	85978375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16820.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131688679-4	chr1	131688170	131689170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311096)	promoter-TSS (NM_001311096)	-25.0	NM_001311096	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	61.5	70.5	95.0	48.0	96.5	80.5
Merged-chr11-76497898-4	chr11	76497415	76498415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198018, intron 1 of 21)	intron (NM_198018, intron 1 of 21)	-3420.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	37.5	103.5	59.5	22.5	63.0	46.0
Merged-chr14-70054349-4	chr14	70053858	70054858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-23087.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91942711-1	chr2	91942211	91943211	+	1000.0	f1_balb.idr	intron (NM_001166597, intron 5 of 31)	intron (NM_001166597, intron 5 of 31)	2219.0	NR_105965	102465604.0		NR_105965	ENSMUSG00000098651	Mir6999	Gm27673|mmu-mir-6999	microRNA 6999	ncRNA	0.0	4.0	5.5	0.0	0.0	9.0
Merged-chr12-73671719-4	chr12	73671202	73672202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	AmnSINE1|SINE|Deu	86906.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11485893-4	chr4	11485409	11486409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347055)	promoter-TSS (NM_001347055)	-49.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-83724923-3	chr2	83724434	83725434	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008402, intron 1 of 29)	CpG	537.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	14.0	25.5	25.0	2.5	13.0	5.5
Merged-chr11-114909667-2	chr11	114909167	114910167	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	19626.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54867546-3	chr6	54867036	54868036	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199143, intron 2 of 4)	intron (NM_199143, intron 2 of 4)	50620.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12375728-4	chr15	12375203	12376203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081064, exon 19 of 24)	exon (NM_001081064, exon 19 of 24)	54207.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134065476-4	chr1	134064971	134065971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13684.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-72978624-4	chr2	72978120	72979120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045269)	promoter-TSS (NR_045269)	661.0	NM_001098425	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-37868329-4	chr16	37867834	37868834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177093)	promoter-TSS (NM_177093)	-66.0	NM_177093	320184.0	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112808879-4	chr12	112808349	112809349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145450)	promoter-TSS (NM_145450)	-126.0	NM_145450	217887.0	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Clba1|Flj20080	cDNA sequence BC022687	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167775421-4	chr2	167774930	167775930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84253.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31759906-4	chr2	31759405	31760405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001283045)	promoter-TSS (NM_001283045)	-34.0	NM_009594	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145746558-7	chr6	145746045	145747045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-61838.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0.0	3.0	0.0	1.5	3.5	1.5
Merged-chr6-136555785-4	chr6	136555296	136556296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	36945.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	0.0	21.5	11.0	11.5	30.5	24.5
Merged-chr4-134767113-2	chr4	134766613	134767613	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145554, intron 1 of 8)	intron (NM_145554, intron 1 of 8)	891.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34304916-4	chr17	34304425	34305425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010382)	promoter-TSS (NM_010382)	-942.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	88.5	295.0	178.5	106.0	269.5	156.0
Merged-chr7-27447842-4	chr7	27447346	27448346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144923)	promoter-TSS (NM_144923)	-132.0	NM_144923	233016.0	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	23.5	67.0	55.0	28.0	57.0	63.5
Merged-chr17-21276863-2	chr17	21276363	21277363	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A2|LTR|ERVK	-9670.0	NM_134201	171235.0	Mm.432089	NM_134201	ENSMUSG00000054142	Vmn1r236	V1rf4	vomeronasal 1 receptor 236	protein-coding	1.5	0.0	1.0	0.5	3.0	0.0
Merged-chr11-32542957-4	chr11	32542456	32543456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	9690.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-73749613-3	chr18	73749119	73750119	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053255, intron 1 of 3)	intron (NM_053255, intron 1 of 3)	4860.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5863741-4	chr13	5863223	5864223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011803, intron 1 of 3)	intron (NM_011803, intron 1 of 3)	2234.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	8.0	24.0	20.0	8.5	25.0	21.5
Merged-chr9-111552053-4	chr9	111551533	111552533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112952.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	0.0	17.0	12.0	3.0	9.0	5.0
Merged-chr19-46152391-4	chr19	46151889	46152889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178930)	promoter-TSS (NM_178930)	-169.0	NM_178930	107338.0	Mm.271620	NM_178930	ENSMUSG00000025224	Gbf1	1700083E03Rik|AI035702|AW049900|mKIAA0248	golgi-specific brefeldin A-resistance factor 1	protein-coding	0.0	10.5	2.0	0.0	0.0	7.0
Merged-chr11-115187344-4	chr11	115186847	115187847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025400)	promoter-TSS (NM_025400)	-31.0	NM_025400	66176.0	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	105.0	260.5	265.0	140.0	337.5	182.5
Merged-chr2-32882801-4	chr2	32882274	32883274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146119, intron 1 of 13)	intron (NM_146119, intron 1 of 13)	6640.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180904239-4	chr1	180903744	180904744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133705)	promoter-TSS (NM_133705)	-30.0	NM_133705	69051.0	Mm.274180	NM_133705	ENSMUSG00000026520	Pycr2	1810018M05Rik|P5cr2	pyrroline-5-carboxylate reductase family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109254154-4	chr3	109253655	109254655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86528.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	15.5	32.5	33.0	10.0	26.5	25.0
Merged-chr14-73138744-4	chr14	73138224	73139224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3786.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46536116-4	chr4	46535626	46536626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029077)	promoter-TSS (NM_029077)	15.0	NM_029077	74735.0	Mm.240252	NM_029077	ENSMUSG00000039853	Trim14	5830400N10Rik|pub	tripartite motif-containing 14	protein-coding	17.0	45.0	44.5	17.5	43.0	61.5
Merged-chr2-118025986-4	chr2	118025484	118026484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	Tigger6a|DNA|TcMar-Tigger	85218.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	0.0	16.0	4.0	7.0	9.0	9.0
Merged-chr16-91821681-2	chr16	91821181	91822181	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 14 of 15)	intron (NM_001110276, intron 14 of 15)	92310.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12119227-4	chr17	12118721	12119721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026644)	promoter-TSS (NM_026644)	-63.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-41137248-4	chr9	41136755	41137755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	20807.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	12.0	25.5	20.0	10.5	38.5	29.0
Merged-chr17-32364506-4	chr17	32364005	32365005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033525, intron 4 of 10)	intron (NR_033525, intron 4 of 10)	-13928.0	NM_017476	54194.0	Mm.281005	NM_017476	ENSMUSG00000002625	Akap8l	HAP95|Nakap95	A kinase (PRKA) anchor protein 8-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13273927-4	chr10	13273380	13274380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359294, intron 2 of 11)	intron (NM_001359294, intron 2 of 11)	50409.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-46639817-4	chr7	46639316	46640316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013789)	promoter-TSS (NM_013789)	-9.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121734414-4	chr11	121733901	121734901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	31974.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	1.0	2.0	3.5	0.0	6.5	4.0
Merged-chr19-56703891-4	chr19	56703390	56704390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18482.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4303745-2	chr19	4303245	4304245	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	2477.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	4.5	22.5	12.0	4.5	17.5	14.5
Merged-chr19-32215041-4	chr19	32214538	32215538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	-4025.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118479327-4	chr7	118478798	118479798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12677.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	39.0	153.5	98.0	48.0	208.5	154.5
Merged-chr5-139327296-2	chr5	139326796	139327796	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1832.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	15.5	28.5	12.5	4.0	36.0	14.0
Merged-chr10-37204575-4	chr10	37204094	37205094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65668.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-149911277-4	chr1	149910774	149911774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 3 of 17)	intron (NM_008869, intron 3 of 17)	11165.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126591699-4	chr8	126591205	126592205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001164598, exon 2 of 2)	exon (NM_001164598, exon 2 of 2)	1731.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-128103699-3	chr1	128103196	128104196	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357573)	promoter-TSS (NM_001357573)	390.0	NM_181750	226412.0	Mm.221041	NM_181750	ENSMUSG00000056211	R3hdm1	R3hdm	R3H domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55204307-4	chr11	55203740	55204740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153139)	promoter-TSS (NM_153139)	-100.0	NM_153139	215335.0	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38395623-4	chr16	38395124	38396124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_134102)	TTS (NM_134102)	33434.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6365939-4	chr4	6365432	6366432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	CpG	252.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	129.0	210.5	170.0	78.0	126.0	115.5
Merged-chr5-96162240-1	chr5	96161740	96162740	+	1000.0	f0_balb.idr	promoter-TSS (NM_178854)	promoter-TSS (NM_178854)	-250.0	NM_144910	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	7.0	12.0	9.0	4.0	13.5	12.0
Merged-chr4-137610475-4	chr4	137609966	137610966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355588, intron 6 of 26)	intron (NM_001355588, intron 6 of 26)	16294.0	NM_130879	170707.0	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	72.0	115.5	113.0	66.5	107.5	132.5
Merged-chr16-55551227-4	chr16	55550721	55551721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	56490.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82764309-4	chr11	82763808	82764808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025884)	promoter-TSS (NM_025884)	13.0	NM_009839	12467.0	Mm.4126	NM_009839	ENSMUSG00000020698	Cct6b	CCT-zeta-2|CCTzeta-2|Cctz-2|TCP-1-zeta-2	chaperonin containing Tcp1, subunit 6b (zeta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135688141-4	chr1	135687643	135688643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-31920.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-40585856-4	chr6	40585368	40586368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021364)	promoter-TSS (NM_021364)	-63.0	NM_001038604	23845.0	Mm.103765	NM_021364	ENSMUSG00000029915	Clec5a	Clecsf5|Ly100|MDL-1|Mdl1	C-type lectin domain family 5, member a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-59131826-1	chr12	59131326	59132326	+	1000.0	f0_balb.idr	intron (NM_001165253, intron 1 of 22)	intron (NM_001165253, intron 1 of 22)	373.0	NM_001165253	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	3.0	6.5	10.0	3.0	7.0	7.0
Merged-chr2-120008844-4	chr2	120008326	120009326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355293, intron 2 of 30)	intron (NM_001355293, intron 2 of 30)	-8691.0	NR_106125	102466842.0		NR_106125	ENSMUSG00000098632	Mir7665	Gm27478|mmu-mir-7665	microRNA 7665	ncRNA	3.5	31.5	21.0	10.5	28.5	24.0
Merged-chr4-72201051-4	chr4	72200564	72201564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285529)	promoter-TSS (NM_001285529)	-171.0	NM_001285530	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83593024-4	chr11	83592516	83593516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009139)	promoter-TSS (NM_009139)	71.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24478876-4	chr17	24478397	24479397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252463, intron 1 of 8)	CpG	181.0	NM_001252464	56716.0	Mm.289516	NM_019988	ENSMUSG00000024142	Mlst8	0610033N12Rik|AA409454|AI505104|AI851821|Gbl	MTOR associated protein, LST8 homolog (S. cerevisiae)	protein-coding	73.5	206.5	163.5	114.5	189.0	208.5
Merged-chr10-24930365-4	chr10	24929880	24930880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2910.0	NM_007482	11846.0	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	3.0	12.5	19.5	4.0	12.0	4.0
Merged-chr2-46366044-4	chr2	46365539	46366539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	669434.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-87408085-4	chr12	87407575	87408575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19720.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89448996-4	chr6	89448502	89449502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 4 of 6)	intron (NM_001167736, intron 4 of 6)	-86389.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-58468762-2	chr3	58468262	58469262	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54042.0	NM_001347233	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38198396-4	chr16	38197903	38198903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 7 of 11)	MTC|LTR|ERVL-MaLR	96421.0	NM_010936	18171.0	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55349830-4	chr4	55349334	55350334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009011)	promoter-TSS (NM_009011)	-208.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	0.5	0.0	3.5	0.0	0.5	4.5
Merged-chr1-145956181-2	chr1	145955681	145956681	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B1|LTR|ERVL	-539448.0	NM_001357571	215378.0	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4160314-4	chr11	4159843	4160843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164620)	promoter-TSS (NM_001164620)	-11.0	NM_026175	67465.0	Mm.156914	NM_026175	ENSMUSG00000002129	Sf3a1	1200014H24Rik|5930416L09Rik|AI159724	splicing factor 3a, subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134567048-6	chr6	134566545	134567545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008514)	promoter-TSS (NM_008514)	-132.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	17.5	24.5	22.0	4.5	36.5	37.0
Merged-chr1-37474250-4	chr1	37473735	37474735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 5 of 15)	intron (NM_173870, intron 5 of 15)	14370.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-51348223-4	chr12	51347711	51348711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167963)	promoter-TSS (NM_001167963)	-19.0	NM_001167964	217558.0	Mm.253264	NM_001015099	ENSMUSG00000035293	G2e3	6030408C04Rik|9030416F18|AW046379|D930034K21Rik|mKIAA1333	G2/M-phase specific E3 ubiquitin ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-18631895-4	chr19	18631414	18632414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145497)	promoter-TSS (NM_145497)	-101.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	34.5	57.5	27.0	21.5	54.0	40.0
Merged-chr12-34789227-4	chr12	34788734	34789734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	MLT1F|LTR|ERVL-MaLR	127861.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	48.5	63.0	54.5	31.5	83.5	63.0
Merged-chr4-132618025-4	chr4	132617522	132618522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21024.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	50.0	114.5	82.0	47.5	82.5	79.0
Merged-chr10-94601195-4	chr10	94600680	94601680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14981.0	NR_106070	102466817.0		NR_106070	ENSMUSG00000098544	Mir7211	Gm27536|mmu-mir-7211	microRNA 7211	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150567882-2	chr4	150567382	150568382	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	84292.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.0	0.0	0.5	7.0	2.0	0.0
Merged-chr9-64692195-2	chr9	64691695	64692695	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134399, intron 17 of 24)	intron (NM_001134399, intron 17 of 24)	45561.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-83988435-2	chr12	83987935	83988935	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_134188, exon 1 of 3)	exon (NM_134188, exon 1 of 3)	574.0	NM_134188	171210.0	Mm.371675	NM_134188	ENSMUSG00000021226	Acot2	AA571646|MTE-I|Mte1	acyl-CoA thioesterase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143043126-4	chr7	143042619	143043619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110355, intron 2 of 4)	intron (NR_110355, intron 2 of 4)	-9631.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	50.5	132.5	118.5	81.5	144.5	131.0
Merged-chr16-43363104-4	chr16	43362597	43363597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	LFSINE_Vert|SINE|tRNA	57099.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-84152158-4	chr7	84151647	84152647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133722)	promoter-TSS (NM_133722)	-254.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6067956-4	chr19	6067455	6068455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028454)	promoter-TSS (NM_028454)	-105.0	NM_028454	73166.0	Mm.489613	NM_028454	ENSMUSG00000024799	Tm7sf2	3110041O18Rik|ANG1|C14SR|Dhcr14	transmembrane 7 superfamily member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138116966-4	chr5	138116468	138117468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011757)	promoter-TSS (NM_011757)	63.0	NM_001044705	22697.0	Mm.2760	NM_011757	ENSMUSG00000037017	Zscan21	AI326272|CTfin51|RU49|Zfp-38|Zfp38|Zipro1	zinc finger and SCAN domain containing 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136908140-4	chr5	136907661	136908661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026073)	promoter-TSS (NM_026073)	11.0	NM_026073	67286.0	Mm.41779	NM_026073	ENSMUSG00000007987	Ift22	3110017O03Rik|AI835745|AI847427|Rabl5	intraflagellar transport 22	protein-coding	1.0	1.0	2.0	0.0	0.0	7.0
Merged-chr2-18065321-7	chr2	18064822	18065822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010804, intron 2 of 22)	CpG-7762	737.0	NM_001252561	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11321313-4	chr19	11320815	11321815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001276398, exon 7 of 7)	3' UTR (NM_001276398, exon 7 of 7)	13380.0	NM_001276398	109225.0	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	5.0	3.5	6.0	5.0	3.0	4.5
Merged-chr7-97082166-2	chr7	97081666	97082666	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	CpG	415.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64295501-4	chr1	64295012	64296012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4b|LINE|L1	-174123.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128412821-4	chr10	128412326	128413326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026259, intron 1 of 7)	intron (NM_026259, intron 1 of 7)	1210.0	NM_026259	67588.0	Mm.294120	NM_026259	ENSMUSG00000025373	Rnf41	2210404G21Rik|4930511A05Rik|4933415P08Rik|D10Ertd722e|FLRF|Nrdp1	ring finger protein 41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95001855-4	chr8	95001360	95002360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018882, intron 1 of 13)	intron (NM_018882, intron 1 of 13)	-15832.0	NM_173036	54672.0	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35376587-4	chr8	35376090	35377090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177741, intron 1 of 1)	CpG	849.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	103.5	254.0	194.0	148.5	249.0	173.5
Merged-chr6-146671619-4	chr6	146671109	146672109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14391.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	0.0	18.5	12.0	18.5	32.5	24.5
Merged-chr15-68318494-2	chr15	68317994	68318994	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19016.0	NR_029534	387226.0		NR_029534	ENSMUSG00000065476	Mir30b	Mirn30b|mir-30b|mmu-mir-30b	microRNA 30b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148585927-4	chr2	148585433	148586433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-86682.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61013130-8	chr9	61012635	61013635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3934.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45288638-4	chr13	45288140	45289140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101102.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	2.0	3.5	0.0	2.5	0.0	4.5
Merged-chr19-40637887-4	chr19	40637356	40638356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	-21914.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	114.0	228.5	167.0	107.0	233.0	152.0
Merged-chr15-96285563-4	chr15	96285071	96286071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1951.0	NM_175251	77044.0	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|BAF200|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86370990-2	chr6	86370490	86371490	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026506)	promoter-TSS (NM_026506)	-550.0	NM_026506	68011.0	Mm.276802	NM_026506	ENSMUSG00000057278	Snrpg	2810024K17Rik|AL022803|SMG|sm-G|snRNP-G	small nuclear ribonucleoprotein polypeptide G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180793669-4	chr1	180793164	180794164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19941.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108716364-4	chr9	108715849	108716849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008924, intron 2 of 10)	B4A|SINE|B4	24206.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19162205-2	chr3	19161705	19162705	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357689, intron 1 of 6)	intron (NM_001357689, intron 1 of 6)	890.0	NM_028840	74252.0	Mm.200383	NM_028840	ENSMUSG00000027599	Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100701515-4	chr11	100701024	100702024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030150, intron 6 of 12)	intron (NM_030150, intron 6 of 12)	2747.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123475769-4	chr9	123475258	123476258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-2943.0	NM_013860	29806.0	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-100059464-4	chr10	100058957	100059957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347156, intron 2 of 8)	intron (NM_001347156, intron 2 of 8)	43636.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111796670-4	chr13	111796162	111797162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	12331.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	56.5	141.5	98.0	59.0	120.5	94.5
Merged-chr7-55859665-4	chr7	55859179	55860179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164661, intron 2 of 31)	intron (NM_001164661, intron 2 of 31)	17608.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-76899180-4	chr8	76898666	76899666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028579, intron 1 of 1)	intron (NR_028579, intron 1 of 1)	1455.0	NR_028579	102640923.0	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	-	predicted gene 10649	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-154584551-4	chr3	154584082	154585082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168358, intron 4 of 4)	B4A|SINE|B4	-12129.0	NM_009968	12972.0	Mm.374855	NM_009968	ENSMUSG00000028199	Cryz	Sez9	crystallin, zeta	protein-coding	21.0	31.0	49.5	32.0	24.0	70.0
Merged-chr11-53774836-4	chr11	53774325	53775325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159393, intron 7 of 9)	intron (NM_001159393, intron 7 of 9)	4352.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-20122299-4	chr8	20121874	20122874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	175058.0	NR_030708	547150.0	Mm.359054	NR_030708	ENSMUSG00000071796	6820431F20Rik	-	cadherin 11 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37141796-4	chr10	37141296	37142296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-2870.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4719246-4	chr16	4718749	4719749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001290761, exon 1 of 5)	5' UTR (NM_001290761, exon 1 of 5)	107.0	NM_001290763	67824.0	Mm.28451	NM_026393	ENSMUSG00000063445	Nmral1	1110025F24Rik|AI256624	NmrA-like family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83720481-4	chr7	83719953	83720953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 2 of 18)	intron (NM_001360088, intron 2 of 18)	11945.0	NM_001360087	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	15.0	20.5	9.5	8.5	2.0	1.5
Merged-chr3-96251932-4	chr3	96251452	96252452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5252.0	NM_054045	97114.0	Mm.358797	NM_054045	ENSMUSG00000081058	Hist2h3c2	H3-614|H3.2-614|Hist2h3c2-ps|Hist2h3ca1|M32461	histone cluster 2, H3c2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122811018-4	chr6	122810541	122811541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9143.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-18271146-4	chr14	18270644	18271644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316711)	promoter-TSS (NM_001316711)	8.0	NM_023526	69721.0	Mm.25648	NM_023526	ENSMUSG00000021772	Nkiras1	2400004O09Rik|KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras-like protein 1	protein-coding	33.0	61.0	63.5	35.5	83.0	61.5
Merged-chr12-86888776-5	chr12	86888291	86889291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CGGG)n|Simple_repeat|Simple_repeat	-3977.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8674134-4	chr12	8673604	8674604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160219)	promoter-TSS (NM_001160219)	-30.0	NM_001160221	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34261781-2	chr18	34261281	34262281	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360980, intron 2 of 16)	intron (NM_001360980, intron 2 of 16)	14087.0	NM_001360979	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	1.5	3.0	1.5	0.0	6.5	0.0
Merged-chr1-37998062-4	chr1	37997567	37998567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198303)	promoter-TSS (NM_198303)	57.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180041776-3	chr2	180041285	180042285	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178750)	promoter-TSS (NM_178750)	679.0	NM_001289476	26444.0	Mm.21728	NM_011969	ENSMUSG00000027566	Psma7	C6-I	proteasome (prosome, macropain) subunit, alpha type 7	protein-coding	39.0	179.5	92.0	52.0	154.5	143.5
Merged-chr2-116932454-4	chr2	116931964	116932964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32312.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30693427-4	chr2	30692912	30693912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15401.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130790375-4	chr4	130789860	130790860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2177.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-23843973-3	chr1	23843487	23844487	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_110972)	TTS (NR_110972)	65749.0	NR_110972	98366.0	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	34.5	54.5	40.5	14.0	2.0	2.0
Merged-chr7-122970414-4	chr7	122969931	122970931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011247)	promoter-TSS (NM_011247)	28.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135314015-4	chr4	135313524	135314524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39190.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43982540-4	chr4	43982041	43983041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001002787)	promoter-TSS (NM_001002787)	-963.0	NM_001002787	442829.0	Mm.348215	NM_001002787	ENSMUSG00000070999	Ccin	4933417A14Rik	calicin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-37580103-4	chr16	37579591	37580591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013547)	promoter-TSS (NM_013547)	-62.0	NR_027778	15233.0	Mm.157442	NM_013547	ENSMUSG00000022821	Hgd	Hgo|aku	homogentisate 1, 2-dioxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126883810-2	chr7	126883310	126884310	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163774, intron 1 of 18)	intron (NM_001163774, intron 1 of 18)	1157.0	NM_001163775	381921.0	Mm.259634	NM_001163774	ENSMUSG00000059981	Taok2	1110033K02Rik|B230344N16|MAP3K17|PSK|PSK1|TAO1|TAO2|mKIAA0881	TAO kinase 2	protein-coding	0.0	4.0	1.0	0.0	4.0	1.0
Merged-chr6-35252624-4	chr6	35252106	35253106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015608)	promoter-TSS (NR_015608)	-93.0	NR_015608	67705.0	Mm.228046	NR_015608	ENSMUSG00000073155	1810058I24Rik	AI414869|AI848234	RIKEN cDNA 1810058I24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122050567-4	chr5	122050072	122051072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001312908)	promoter-TSS (NM_001312908)	-721.0	NM_001312908	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	0.5	10.0	10.0	0.0	4.0	4.0
Merged-chr16-90177673-4	chr16	90177167	90178167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35430.0	NR_033476	100038709.0	Mm.484070	NR_033476		Gm10789	-	predicted gene 10789	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44005089-4	chr7	44004572	44005572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7606.0	NM_010644	16618.0	Mm.439663	NM_010644	ENSMUSG00000053719	Klk1b26	Egfbp2|Klk26|PRECE-2|mGK-26|mGK26	kallikrein 1-related petidase b26	protein-coding	1.5	13.5	7.5	10.5	35.0	18.5
Merged-chr11-55113680-4	chr11	55113178	55114178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010299)	TTS (NM_010299)	15693.0	NM_010299	14667.0	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8911696-4	chr4	8911243	8912243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GC_rich|Low_complexity|Low_complexity	160419.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112247105-2	chr5	112246605	112247605	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021351, intron 5 of 5)	intron (NM_021351, intron 5 of 5)	5413.0	NM_001312884	12959.0	Mm.40324	NM_021351	ENSMUSG00000066975	Cryba4	-	crystallin, beta A4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91727165-4	chr2	91726603	91727603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3035.0	NM_172669	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	7.5	43.0	26.5	21.0	56.5	33.5
Merged-chr5-30961525-7	chr5	30961016	30962016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	-1189.0	NM_016703	50907.0	Mm.272414	NM_016703	ENSMUSG00000045302	Preb	C85705	prolactin regulatory element binding	protein-coding	19.0	49.5	24.5	55.0	37.0	23.5
Merged-chr16-31926785-4	chr16	31926299	31927299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_LTR|LTR|ERV1	-7052.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-22847487-2	chr14	22846987	22847987	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 6 of 6)	intron (NM_028275, intron 6 of 6)	247084.0	NR_033550	791307.0	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	-	predicted gene 10248	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155159213-3	chr1	155158730	155159730	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021433, intron 1 of 7)	CpG	527.0	NM_021433	58244.0	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191023334-4	chr1	191022841	191023841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081259, intron 1 of 9)	L2b|LINE|L2	-2010.0	NR_027298	100125339.0	Mm.472263	NR_027298	ENSMUSG00000097845	A230020J21Rik	-	RIKEN cDNA A230020J21 gene	ncRNA	14.0	12.0	6.0	4.5	10.0	4.5
Merged-chr10-117435599-4	chr10	117435079	117436079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11856.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	34.0	134.5	87.5	64.0	147.0	124.0
Merged-chr7-101299032-2	chr7	101298532	101299532	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001111111, exon 3 of 18)	exon (NM_001111111, exon 3 of 18)	3056.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102925189-4	chr11	102924686	102925686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197959)	promoter-TSS (NM_197959)	-62.0	NM_197959	70218.0	Mm.32084	NM_197959	ENSMUSG00000051378	Kif18b	3000004C01Rik	kinesin family member 18B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-17907058-4	chr11	17906565	17907565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46810.0	NM_026576	68145.0	Mm.178684	NM_026576	ENSMUSG00000016984	Etaa1	5730466H23Rik|AA672646	Ewing tumor-associated antigen 1	protein-coding	10.5	7.0	1.5	6.0	10.5	8.5
Merged-chr2-160361673-4	chr2	160361195	160362195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5370.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20801764-4	chr18	20801269	20802269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55365.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67610938-4	chr18	67610431	67611431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	30424.0	NM_001357523	225659.0	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	7.0	12.0	7.5	9.0	9.5	7.5
Merged-chr11-60775108-4	chr11	60774616	60775616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009410, intron 1 of 18)	intron (NM_009410, intron 1 of 18)	2249.0	NM_009410	21975.0	Mm.10708	NM_009410	ENSMUSG00000002814	Top3a	-	topoisomerase (DNA) III alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142390387-4	chr7	142389855	142390855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-2485.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	15.5	132.5	60.0	48.5	143.0	66.5
Merged-chr3-79161593-3	chr3	79161118	79162118	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15743.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	4.0	11.5	11.0	5.0	16.0	11.5
Merged-chr15-34043267-4	chr15	34042776	34043776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39443.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	5.5	7.5	20.0	23.0	11.5	3.0
Merged-chr14-56571923-4	chr14	56571422	56572422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001014996)	promoter-TSS (NM_001014996)	-76.0	NM_001014996	219103.0	Mm.212525	NM_001014996	ENSMUSG00000064128	Cenpj	4932437H03Rik|CPAP|Gm81|LAP|LIP1|Sas4	centromere protein J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-162565175-4	chr1	162564667	162565667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-5348.0	NM_001356527	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	13.5	19.5	28.5	5.0	21.0	26.0
Merged-chr6-124806746-2	chr6	124806246	124807246	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1915.0	NM_001306051	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	0.0	15.0	7.5	0.0	14.5	4.5
Merged-chr11-100619144-4	chr11	100618661	100619661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019795, intron 1 of 13)	CpG	1007.0	NM_019795	56354.0	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	88.5	177.5	153.0	83.5	206.5	149.5
Merged-chr19-5841066-2	chr19	5840566	5841566	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131212, exon 1 of 1)	non-coding (NR_131212, exon 1 of 1)	4412.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45564414-4	chr17	45563919	45564919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357105, intron 1 of 3)	intron (NM_001357105, intron 1 of 3)	483.0	NM_001357105	73836.0	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	41.5	83.5	46.0	24.5	96.5	37.0
Merged-chr14-67098343-4	chr14	67097796	67098796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25825.0	NM_001205188	71978.0	Mm.273997	NM_028032	ENSMUSG00000022052	Ppp2r2a	2410004D02Rik|mKIAA1541	protein phosphatase 2, regulatory subunit B, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-103921033-4	chr13	103920528	103921528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289474)	promoter-TSS (NM_001289474)	-442.0	NM_001005868	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69634190-4	chr3	69633688	69634688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35228.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	26.0	40.0	24.5	6.0	29.0	15.0
Merged-chr7-104369940-4	chr7	104369451	104370451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11305.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	46.5	93.0	83.5	38.0	123.5	94.5
Merged-chr13-99353327-4	chr13	99352819	99353819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173757, intron 2 of 10)	intron (NM_173757, intron 2 of 10)	8533.0	NM_173757	218506.0	Mm.30208	NM_173757	ENSMUSG00000041632	Mrps27	2610028H14Rik	mitochondrial ribosomal protein S27	protein-coding	3.5	1.5	0.0	0.0	3.0	0.0
Merged-chr6-51129863-4	chr6	51129341	51130341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	140069.0	NR_029719	387166.0		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70833217-5	chr8	70832737	70833737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6483.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	193.5	436.0	356.0	258.0	578.5	413.0
Merged-chr5-65592555-2	chr5	65592055	65593055	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016786, intron 5 of 6)	intron (NM_016786, intron 5 of 6)	55310.0	NM_001310619	53323.0	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80711293-1	chr10	80710793	80711793	+	1000.0	f1_c57bl6.idr	intron (NM_007460, intron 23 of 30)	B4A|SINE|B4	8600.0	NM_027829	71564.0	Mm.35802	NM_027829	ENSMUSG00000055862	Izumo4	9030607L17Rik|AI550407	IZUMO family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120786590-4	chr8	120786114	120787114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47975.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47351067-4	chr14	47350544	47351544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22816.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	74.5	281.0	145.5	103.0	227.0	158.5
Merged-chr5-120503163-2	chr5	120502663	120503663	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023625, intron 1 of 11)	intron (NM_023625, intron 1 of 11)	460.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43562204-4	chr7	43561694	43562694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008549)	promoter-TSS (NM_001008549)	-176.0	NM_001008549	210104.0	Mm.333821	NM_001008549	ENSMUSG00000056592	Zfp658	-	zinc finger protein 658	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47593436-4	chr17	47592944	47593944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007632)	promoter-TSS (NM_007632)	-23.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81103476-2	chr10	81102976	81103976	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1140.0	NR_049187	100885826.0		NR_049187	ENSMUSG00000093498	Mir5615-2	Gm23367|mir-5615-2|mmu-mir-5615-2	microRNA 5615-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69774949-4	chr8	69774347	69775347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177899)	promoter-TSS (NM_177899)	64.0	NM_177899	330788.0	Mm.41364	NM_177899	ENSMUSG00000043090	Zfp866	9830167H18Rik|AI875089|C85843|D330038O06Rik	zinc finger protein 866	protein-coding	81.5	171.0	184.5	104.5	236.0	146.5
Merged-chr13-60671973-2	chr13	60671473	60672473	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	69762.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	38.5	193.0	100.5	62.5	116.5	110.5
Merged-chr18-36342083-4	chr18	36341599	36342599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-6525.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89785549-4	chr3	89784991	89785991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11882.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	0.0	6.5	1.5	0.0	6.5	1.5
Merged-chr9-31283235-4	chr9	31282741	31283741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	11840.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-90828794-4	chr8	90828302	90829302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177224)	promoter-TSS (NM_177224)	-33.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	20.5	9.0	12.0	18.0	20.5	14.5
Merged-chr1-136173094-2	chr1	136172594	136173594	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 34 of 34)	intron (NM_001039472, intron 34 of 34)	39734.0	NM_001329610	76422.0	Mm.159735	NM_001329610		Mroh3	2310006M14Rik	maestro heat-like repeat family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110614383-4	chr7	110613883	110614883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 1 of 40)	CpG	537.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-19352023-4	chr2	19351515	19352515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_126563, exon 4 of 4)	non-coding (NR_126563, exon 4 of 4)	7698.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165681589-4	chr1	165681014	165682014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	26580.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84562865-4	chr1	84562358	84563358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152915, intron 4 of 12)	MTB_Mm|LTR|ERVL-MaLR	-132981.0	NR_039588	100628595.0		NR_039588	ENSMUSG00000093254	Mir5126	mir-5126|mmu-mir-5126|mu-mir-5126	microRNA 5126	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-23759727-4	chr19	23759268	23760268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177034, intron 1 of 12)	intron (NM_177034, intron 1 of 12)	892.0	NM_177034	319924.0	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	6.0	22.5	8.0	14.0	9.0	6.0
Merged-chr7-141467787-4	chr7	141467294	141468294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111050)	promoter-TSS (NM_001111050)	-23.0	NR_152219	100126795.0	Mm.386851	NR_152219	ENSMUSG00000073787	Gm10575	-	predicted gene 10575	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95655333-2	chr3	95654833	95655833	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3388.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	2.0	27.0	5.0	2.0	27.0	4.5
Merged-chr5-141004421-7	chr5	141003922	141004922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3826.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152152397-4	chr4	152151883	152152883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207687)	promoter-TSS (NM_207687)	-176.0	NM_207687	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117304127-4	chr2	117303626	117304626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 3 of 16)	intron (NM_011246, intron 3 of 16)	38751.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-9880566-4	chr10	9880025	9881025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081344, intron 2 of 25)	Lx|LINE|L1	20515.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	9.0	2.5	1.5	4.0	1.0	8.5
Merged-chr3-98032388-4	chr3	98031877	98032877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	18839.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70421571-4	chr9	70421052	70422052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007630)	promoter-TSS (NM_007630)	2.0	NM_007630	12442.0	Mm.22592	NM_007630	ENSMUSG00000032218	Ccnb2	CycB2	cyclin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44768140-4	chr16	44767634	44768634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	2398.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112748249-4	chr13	112747741	112748741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52536.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	5.5	9.5	0.5	2.0	4.5	4.5
Merged-chr1-58973506-4	chr1	58973013	58974013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172406)	promoter-TSS (NM_172406)	-9.0	NM_172656	227154.0	Mm.286006	NM_172656	ENSMUSG00000026027	Stradb	AA792893|Als2cr2|B830008M19|D1Ucla2|ILPIP|ILPIPA|PRO1038|Papk|Syradb	STE20-related kinase adaptor beta	protein-coding	8.5	24.5	34.0	9.0	37.5	22.0
Merged-chr8-27260283-4	chr8	27259784	27260784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007918)	promoter-TSS (NM_007918)	-43.0	NM_007918	13685.0	Mm.6700	NM_007918	ENSMUSG00000031490	Eif4ebp1	4e-bp1|AA959816|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55492374-3	chr12	55491878	55492878	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010907, exon 1 of 6)	exon (NM_010907, exon 1 of 6)	269.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122631066-4	chr2	122630581	122631581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033256, exon 1 of 2)	exon (NM_001033256, exon 1 of 2)	456.0	NM_001033256	214616.0	Mm.271306	NM_001033256		Spata5l1	AV141009|C130039A10Rik	spermatogenesis associated 5-like 1	protein-coding	39.5	111.5	49.0	26.5	85.0	48.0
Merged-chr14-20826139-3	chr14	20825634	20826634	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-10528.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	26.5	69.5	49.5	31.0	99.5	41.0
Merged-chr12-85455350-4	chr12	85454845	85455845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-18545.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88745531-4	chr15	88745012	88746012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2D|LTR|ERVL	-6199.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81351666-4	chr13	81351146	81352146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 83 of 89)	intron (NM_054053, intron 83 of 89)	281498.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-101625899-2	chr3	101625399	101626399	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-21192.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-107150620-4	chr8	107150154	107151154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025558)	promoter-TSS (NM_025558)	-7.0	NM_025558	66427.0	Mm.20242	NM_025558	ENSMUSG00000031924	Cyb5b	1810044O22Rik|AU015618|Cyb5m	cytochrome b5 type B	protein-coding	6.0	31.0	23.0	11.0	15.0	5.0
Merged-chr9-123925453-4	chr9	123924923	123925923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	43269.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154898629-2	chr4	154898129	154899129	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_025582, exon 2 of 7)	exon (NM_025582, exon 2 of 7)	414.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32430889-4	chr16	32430372	32431372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009981)	promoter-TSS (NM_009981)	-49.0	NM_009981	13026.0	Mm.98775	NM_009981	ENSMUSG00000005615	Pcyt1a	CTalpha|Cctalpha|Ctpct|Cttalpha	phosphate cytidylyltransferase 1, choline, alpha isoform	protein-coding	61.5	98.0	75.0	50.5	87.5	57.5
Merged-chr2-151576235-4	chr2	151575691	151576691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145535, intron 1 of 8)	CpG	3568.0	NM_145535	228765.0	Mm.32068	NM_145535	ENSMUSG00000027456	Sdcbp2	-	syndecan binding protein (syntenin) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96240374-4	chr3	96239938	96240938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013549).2	promoter-TSS (NM_013549).2	-64.0	NM_178212	319192.0	Mm.5220	NM_178212	ENSMUSG00000063954	Hist2h2aa2	H2a-614|H2a-615	histone cluster 2, H2aa2	protein-coding	4.5	52.0	27.5	0.0	17.5	34.5
Merged-chr3-95626147-2	chr3	95625647	95626647	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001026212, intron 1 of 2)	intron (NM_001026212, intron 1 of 2)	1167.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	3.5	0.0	7.5	1.0	3.5	3.0
Merged-chr16-58523181-4	chr16	58522666	58523666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_018784, exon 1 of 11)	5' UTR (NM_018784, exon 1 of 11)	260.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130491003-4	chr2	130490516	130491516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355161, intron 1 of 21)	intron (NM_001355161, intron 1 of 21)	40738.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	73.5	136.0	101.5	123.0	333.0	220.0
Merged-chr2-23067751-2	chr2	23067251	23068251	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028793)	promoter-TSS (NM_028793)	-450.0	NR_149742	74159.0	Mm.181973	NM_028793	ENSMUSG00000026781	Acbd5	1300014E15Rik	acyl-Coenzyme A binding domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88530704-2	chr17	88530207	88531207	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028658, intron 1 of 21)	intron (NM_028658, intron 1 of 21)	583.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	7.0	17.5	13.0	15.5	20.0	9.0
Merged-chr4-44756221-4	chr4	44755713	44756713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138590)	promoter-TSS (NM_138590)	-346.0	NM_138590	319885.0	Mm.331576	NM_138590	ENSMUSG00000035649	Zcchc7	4930572I07Rik|D4Wsu132e	zinc finger, CCHC domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128595123-4	chr8	128594611	128595611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90543.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	18.0	46.0	60.5	28.0	43.0	47.5
Merged-chr1-162548554-4	chr1	162548049	162549049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144877)	promoter-TSS (NM_144877)	-204.0	NM_144877	71449.0	Mm.270569	NM_144877	ENSMUSG00000026694	Mettl13	5630401D24Rik	methyltransferase like 13	protein-coding	82.0	156.5	170.0	79.5	190.5	143.0
Merged-chr10-121519885-2	chr10	121519385	121520385	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43635.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27123714-4	chr14	27123222	27124222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20271.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	38.5	93.5	43.5	33.5	114.0	43.5
Merged-chr4-150237134-4	chr4	150236659	150237659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025388).2	promoter-TSS (NM_001025388).2	-38.0	NM_023119	13806.0	Mm.70666	NM_023119	ENSMUSG00000063524	Eno1	0610008I15|AL022784|Eno-1|MBP-1	enolase 1, alpha non-neuron	protein-coding	31.5	45.5	70.5	25.0	87.5	32.5
Merged-chr5-43786773-4	chr5	43786267	43787267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-4618.0	NM_178729	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33573933-4	chr16	33573430	33574430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 4 of 11)	MIR3|SINE|MIR	55335.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156863975-4	chr2	156863482	156864482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026124, intron 1 of 3)	intron (NM_026124, intron 1 of 3)	860.0	NM_026124	67388.0	Mm.29264	NM_026124	ENSMUSG00000027637	1110008F13Rik	AI316789	RIKEN cDNA 1110008F13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99109800-4	chr9	99109309	99110309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 2 of 23)	intron (NM_029094, intron 2 of 23)	30402.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121488836-4	chr10	121488331	121489331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12581.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	100.5	169.5	157.5	124.5	239.0	142.5
Merged-chr10-56228831-4	chr10	56228327	56229327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033385)	promoter-TSS (NM_001033385)	-138.0	NM_001033385	544696.0	Mm.411188	NM_001033385	ENSMUSG00000038122	Tbc1d32	Bromi|C6orf170|D630037F22Rik|b2b2284Clo	TBC1 domain family, member 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6260500-4	chr15	6259996	6260996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39293.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94377221-4	chr8	94376713	94377713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9216.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102584833-4	chr4	102584346	102585346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	-2712.0	NM_001177982	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	7.0	6.5	3.5	1.0	2.5	3.0
Merged-chr7-130866419-6	chr7	130865963	130866963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133942, intron 1 of 9)	CpG	739.0	NM_001346515	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121314246-4	chr9	121313746	121314746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	16744.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	68.0	175.0	121.0	86.5	184.5	128.0
Merged-chr1-82316567-4	chr1	82316074	82317074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029777)	promoter-TSS (NM_029777)	-5.0	NM_029777	76867.0	Mm.226994	NM_029777	ENSMUSG00000026142	Rhbdd1	4930418P06Rik|RRP4|mRHBDD1	rhomboid domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-92214894-4	chr6	92214398	92215398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030081)	promoter-TSS (NM_030081)	-87.0	NM_030081	78287.0	Mm.290734	NM_030081	ENSMUSG00000014550	Rbsn	5330426D11Rik|Zfyve20	rabenosyn, RAB effector	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81429765-4	chr10	81429259	81430259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ZP3AR|Satellite|Satellite	-2586.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19077916-1	chr10	19077416	19078416	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-62506.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	23.5	15.0	27.5	33.5	58.5	49.0
Merged-chr2-118016002-2	chr2	118015502	118016502	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	ORR1D2|LTR|ERVL-MaLR	95200.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	10.0	5.0	4.5	3.5	8.0	8.5
Merged-chr3-146405101-2	chr3	146404598	146405598	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253769, intron 1 of 13)	intron (NM_001253769, intron 1 of 13)	456.0	NM_001355661	99167.0	Mm.200783	NM_138744	ENSMUSG00000036825	Ssx2ip	AU014939|AU042321|Adip	synovial sarcoma, X 2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	2.0	2.5
Merged-chr19-8518443-4	chr19	8517944	8518944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR3-int|LTR|ERVK	-72810.0	NM_001164634	19879.0	Mm.285294	NM_031194	ENSMUSG00000063796	Slc22a8	Oat3|Roct	solute carrier family 22 (organic anion transporter), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106281110-5	chr9	106280642	106281642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027354)	promoter-TSS (NM_027354)	81.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	79.0	200.5	156.5	66.0	200.5	153.0
Merged-chr5-24530243-4	chr5	24529732	24530732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3384.0	NM_015739	231044.0	Mm.246596	NM_015739	ENSMUSG00000067724	Gbx1	Gbx-1	gastrulation brain homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-104001180-4	chr11	104000695	104001695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34324.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137657225-4	chr5	137656763	137657763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178162, intron 6 of 11)	RSINE1|SINE|B4	-11549.0	NM_010571	16369.0	Mm.24486	NM_010571	ENSMUSG00000047182	Irs3	AA408304	insulin receptor substrate 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120673146-7	chr11	120672783	120673783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026877, intron 1 of 15)	CpG	310.0	NM_026877	68938.0	Mm.294020	NM_026877	ENSMUSG00000025142	Aspscr1	1190006K01Rik|ASPC|ASPCR1|ASPL|ASPS|RCC17|TUG	alveolar soft part sarcoma chromosome region, candidate 1 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50872793-4	chr17	50872281	50873281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 14 of 21)	intron (NM_028162, intron 14 of 21)	174100.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	1.5	1.5	0.0	0.0	1.0	2.0
Merged-chr3-20004718-4	chr3	20004224	20005224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 14 of 16)	intron (NM_080634, intron 14 of 16)	30586.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-80325412-4	chr8	80324944	80325944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-168601.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184033629-4	chr1	184033125	184034125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022019)	promoter-TSS (NM_022019)	373.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-147181738-2	chr3	147181238	147182238	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	329371.0	NM_001302957	70892.0	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	0.0	1.0	1.5	3.0	0.0	3.0
Merged-chr14-34296547-4	chr14	34296049	34297049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153399, intron 2 of 11)	intron (NR_153399, intron 2 of 11)	13968.0	NR_153399	75698.0	Mm.45406	NM_029389	ENSMUSG00000041471	Fam35a	3110001K24Rik	family with sequence similarity 35, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110844400-4	chr7	110843905	110844905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025999)	promoter-TSS (NM_025999)	-24.0	NM_025999	67150.0	Mm.96867	NM_025999	ENSMUSG00000030788	Rnf141	2610110L04Rik|AA792898|AU022812|ZFP36|ZNF230	ring finger protein 141	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-101555409-4	chr6	101554916	101555916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-177519.0	NM_018884	55983.0	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172310224-4	chr1	172309742	172310742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2125.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	28.5	51.0	43.0	36.5	119.0	33.5
Merged-chr4-41756162-4	chr4	41755615	41756615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302511)	promoter-TSS (NM_001302511)	-95.0	NM_001302511	14430.0	Mm.439669	NM_016658	ENSMUSG00000036073	Galt	AW553376	galactose-1-phosphate uridyl transferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27690493-2	chr2	27689993	27690993	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	(TG)n|Simple_repeat|Simple_repeat	13292.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168540033-4	chr2	168539541	168540541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037177, intron 3 of 6)	L2|LINE|L2	50324.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-25500238-2	chr5	25499738	25500738	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030700, exon 1 of 1)	non-coding (NR_030700, exon 1 of 1)	441.0	NR_030700	320965.0	Mm.32025	NR_030700		4831440E17Rik	-	RIKEN cDNA 4831440E17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141546004-4	chr4	141545496	141546496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030695)	promoter-TSS (NR_030695)	-166.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	11.5	25.5	42.0	33.5	80.5	76.0
Merged-chr5-115349057-4	chr5	115348559	115349559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007748)	promoter-TSS (NM_007748)	-104.0	NM_007748	12861.0	Mm.43415	NM_007748	ENSMUSG00000041697	Cox6a1	VIaL	cytochrome c oxidase subunit VIa polypeptide 1	protein-coding	0.0	0.5	4.0	0.0	15.0	1.0
Merged-chr3-67557372-4	chr3	67556854	67557854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25414.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	4.0	13.0	17.0	0.0	5.5	4.5
Merged-chr7-55794141-4	chr7	55793626	55794626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360874)	promoter-TSS (NM_001360874)	1.0	NM_001360873	233276.0	Mm.284306	NM_146190	ENSMUSG00000033790	Tubgcp5	B130010C12Rik|GCP5|mKIAA1899	tubulin, gamma complex associated protein 5	protein-coding	21.0	27.5	24.5	3.5	27.0	19.0
Merged-chr1-171231098-4	chr1	171230574	171231574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010185, intron 2 of 4)	intron (NM_010185, intron 2 of 4)	3275.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	37.0	69.5	47.5	15.0	50.0	57.5
Merged-chr2-73312674-4	chr2	73312198	73313198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029022)	promoter-TSS (NM_029022)	46.0	NM_001355711	74616.0	Mm.247457	NM_029022	ENSMUSG00000008226	Scrn3	4833415E20Rik|AI427019|AV002033|Ses3	secernin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-10439609-4	chr3	10439101	10440101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127191, intron 1 of 6)	CpG	529.0	NM_029068	74718.0	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-43889762-4	chr16	43889284	43890284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356328)	promoter-TSS (NM_001356328)	-108.0	NM_001356328	106248.0	Mm.275354	NM_029128	ENSMUSG00000022704	Qtrt2	3110012M05Rik|4930470H18Rik|AI648807|Qrtr2|Qtrtd1	queuine tRNA-ribosyltransferase accessory subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72009364-1	chr8	72008864	72009864	+	1000.0	f1_c57bl6.idr	intron (NM_024444, intron 1 of 12)	intron (NM_024444, intron 1 of 12)	262.0	NM_024444	72054.0	Mm.160020	NM_024444	ENSMUSG00000003484	Cyp4f18	1810054N16Rik|Cyp4f3|Cypf18	cytochrome P450, family 4, subfamily f, polypeptide 18	protein-coding	39.0	90.5	49.5	3.5	9.5	4.0
Merged-chr5-135912013-4	chr5	135911509	135912509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018871, intron 1 of 1)	intron (NM_018871, intron 1 of 1)	22632.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-143099557-2	chr6	143099038	143100038	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001362118, intron 2 of 25)	CpG	614.0	NM_001362118	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63401809-4	chr4	63401307	63402307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 1 of 21)	intron (NM_001045514, intron 1 of 21)	1638.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-93206005-4	chr5	93205501	93206501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029363)	promoter-TSS (NM_029363)	494.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	5.5	5.5	6.5	1.0	10.5	7.5
Merged-chr5-99362579-2	chr5	99362079	99363079	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	(CA)n|Simple_repeat|Simple_repeat	-109652.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-38423575-4	chr3	38423088	38424088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61228.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-72783396-4	chr14	72782890	72783890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73387.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.0	0.0	2.0	2.0	0.0	0.0
Merged-chr3-95662095-4	chr3	95661597	95662597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008562, exon 3 of 3)	3' UTR (NM_008562, exon 3 of 3)	3376.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180725984-4	chr1	180725494	180726494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133225)	promoter-TSS (NM_133225)	-49.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85531955-2	chr12	85531455	85532455	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	58065.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70688052-4	chr11	70687580	70688580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178116)	promoter-TSS (NM_178116)	25.0	NM_001190376	216874.0	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149485241-4	chr4	149484747	149485747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133435)	promoter-TSS (NM_133435)	18.0	NM_001356322	69151.0	Mm.464434	NM_026963	ENSMUSG00000028990	Lzic	1810030J04Rik|AW047580	leucine zipper and CTNNBIP1 domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134314896-4	chr5	134314400	134315400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080749)	promoter-TSS (NM_001080749)	-140.0	NM_010365	14886.0	Mm.261570	NM_010365	ENSMUSG00000060261	Gtf2i	6030441I21Rik|BAP-135|Diws1t|GtfII-I|Spin|TFII-I|WBSCR6	general transcription factor II I	protein-coding	0.0	0.0	0.0	14.5	29.0	21.5
Merged-chr19-4333506-2	chr19	4333006	4334006	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001984, intron 12 of 20)	intron (NM_001001984, intron 12 of 20)	-27284.0	NM_001290818	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	69.5	115.0	84.0	53.0	124.5	106.5
Merged-chr8-56299611-4	chr8	56299120	56300120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008278, intron 3 of 6)	intron (NM_008278, intron 3 of 6)	5068.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-110745420-4	chr10	110744909	110745909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178609)	promoter-TSS (NM_178609)	-30.0	NM_001358560	52679.0	Mm.11747	NM_178609	ENSMUSG00000020185	E2f7	A630014C11Rik|D10Ertd739e|E2F-7	E2F transcription factor 7	protein-coding	0.0	4.0	0.0	3.0	1.0	0.0
Merged-chr1-74948385-2	chr1	74947885	74948885	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001313683, exon 2 of 2)	exon (NM_001313683, exon 2 of 2)	3287.0	NM_001313683	16147.0	Mm.439736	NM_010544	ENSMUSG00000006538	Ihh	HHG-2	Indian hedgehog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66305059-2	chr7	66304559	66305559	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 10 of 33)	ORR1F|LTR|ERVL-MaLR	76665.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123865616-4	chr5	123865105	123866105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030701)	promoter-TSS (NM_030701)	-89.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	27.0	38.0	32.5	6.0	40.0	32.0
Merged-chr8-116627356-4	chr8	116626867	116627867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 1 of 6)	Lx8|LINE|L1	105624.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40379694-4	chr12	40379190	40380190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178845, intron 1 of 11)	intron (NM_178845, intron 1 of 11)	66100.0	NM_172575	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-185294825-4	chr1	185294326	185295326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198653, exon 18 of 23)	exon (NM_198653, exon 18 of 23)	-18493.0	NR_029580	387189.0		NR_029580	ENSMUSG00000065581	Mir194-1	Mirn194|Mirn194-1|miR-194|mir-194-1	microRNA 194-1	ncRNA	10.0	23.5	9.5	4.0	26.0	4.5
Merged-chr3-122245527-5	chr3	122245020	122246020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008129)	promoter-TSS (NM_008129)	-37.0	NM_008129	14630.0	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-7845020-1	chr6	7844520	7845520	+	1000.0	f0_c57.idr	promoter-TSS (NM_052993)	promoter-TSS (NM_052993)	-204.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-144937680-4	chr7	144937170	144938170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007631, intron 2 of 4)	intron (NM_007631, intron 2 of 4)	2255.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	4.5	17.5	9.0	9.0	26.0	18.0
Merged-chr7-122197505-2	chr7	122197005	122198005	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11274.0	NM_001316689	26918.0	Mm.20452	NM_012016	ENSMUSG00000030866	Ern2	Ern1|Ire1|Ire1b|ire1-beta|mIre1	endoplasmic reticulum (ER) to nucleus signalling 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43508814-4	chr4	43508324	43509324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013377)	promoter-TSS (NM_001013377)	-77.0	NM_001013377	230098.0	Mm.331567	NM_001013377	ENSMUSG00000051517	Arhgef39	E130306D19Rik	Rho guanine nucleotide exchange factor (GEF) 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-12978876-2	chr7	12978376	12979376	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168562, intron 1 of 4)	intron (NM_001168562, intron 1 of 4)	1028.0	NM_001168561	269870.0	Mm.62083	NM_175558	ENSMUSG00000033961	Zfp446	A630035I11Rik|A930031C22|AA120513|AV306632	zinc finger protein 446	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140616843-4	chr5	140616347	140617347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9506.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30464164-4	chr2	30463672	30464672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	10027.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46649887-2	chr17	46649387	46650387	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025611)	promoter-TSS (NM_025611)	-451.0	NM_025611	66515.0	Mm.329078	NM_025611	ENSMUSG00000038545	Cul7	2510004L20Rik|AA409809|C230011P08Rik|p185|p193	cullin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-92853305-4	chr8	92852806	92853806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008610, exon 13 of 13)	3' UTR (NM_008610, exon 13 of 13)	-2027.0	NM_173014	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	177.0	442.0	359.5	161.0	359.5	370.5
Merged-chr3-105932713-4	chr3	105932223	105933223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033780)	promoter-TSS (NM_001033780)	-59.0	NM_001033780	433638.0	Mm.239081	NM_001033780	ENSMUSG00000074342	I830077J02Rik	-	RIKEN cDNA I830077J02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13890045-2	chr9	13889545	13890545	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62329.0	NM_176836	72826.0	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-48124942-4	chr4	48124426	48125426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026343)	promoter-TSS (NM_026343)	7.0	NM_026343	67727.0	Mm.171334	NM_026343	ENSMUSG00000061455	Stx17	4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351	syntaxin 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21031501-4	chr9	21030989	21031989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008319)	promoter-TSS (NM_008319)	-549.0	NM_008319	15898.0	Mm.4629	NM_008319	ENSMUSG00000032174	Icam5	CD50|ICAM-3|Icam3|TLN|Tlcn	intercellular adhesion molecule 5, telencephalin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76319087-4	chr12	76318570	76319570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138745, intron 27 of 27)	HAL1|LINE|L1	-5821.0	NM_001101471	238276.0	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36348443-7	chr18	36347944	36348944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081365)	promoter-TSS (NM_001081365)	-180.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27732287-2	chr2	27731787	27732787	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	21704.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118482615-4	chr7	118482141	118483141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9334.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	122.5	271.0	176.0	144.0	276.5	195.0
Merged-chr11-116024406-7	chr11	116023910	116024910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008211)	promoter-TSS (NM_008211)	94.0	NM_008211	15081.0	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119791430-2	chr13	119790941	119791941	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_028245)	promoter-TSS (NM_028245)	-319.0	NM_001302550	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-57798171-4	chr14	57797686	57798686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142441)	promoter-TSS (NM_001142441)	-3.0	NM_009119	20220.0	Mm.30173	NM_009119	ENSMUSG00000021963	Sap18	C530046K05Rik|D11Ertd539e|EMegR4|Sap18a|Sinbp1	Sin3-associated polypeptide 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-101082930-4	chr12	101082420	101083420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_038047, exon 1 of 4)	non-coding (NR_038047, exon 1 of 4)	469.0	NR_038049	319760.0	Mm.440198	NM_176997	ENSMUSG00000097121	D130020L05Rik	9430007L23Rik	RIKEN cDNA D130020L05 gene	ncRNA	62.5	103.0	84.0	56.0	99.5	93.0
Merged-chr15-66577976-3	chr15	66577466	66578466	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081409, intron 1 of 20)	CpG	394.0	NM_001081409	239510.0	Mm.267473	NM_178718	ENSMUSG00000072501	Phf20l1	CGI-72|E130113K22Rik	PHD finger protein 20-like 1	protein-coding	81.5	140.5	82.5	26.5	61.5	83.5
Merged-chr4-132040306-5	chr4	132039776	132040776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	8802.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10392588-1	chr17	10392088	10393088	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-63628.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155146845-4	chr1	155146340	155147340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355062)	promoter-TSS (NM_001355062)	-26.0	NM_008209	15064.0	Mm.7580	NM_008209	ENSMUSG00000026471	Mr1	H2ls	major histocompatibility complex, class I-related	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63075905-2	chr14	63075405	63076405	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20832.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101329302-4	chr4	101328796	101329796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	17731.0	NR_029537	387143.0		NR_029537	ENSMUSG00000065451	Mir101a	Mirn101|Mirn101a|miR-101|mir-101a	microRNA 101a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130029333-4	chr5	130028817	130029817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007761)	promoter-TSS (NM_007761)	11.0	NM_007761	12909.0	Mm.18072	NM_007761	ENSMUSG00000025532	Crcp	AL022669	calcitonin gene-related peptide-receptor component protein	protein-coding	32.0	45.5	29.5	15.0	59.5	30.5
Merged-chr4-34466037-4	chr4	34465533	34466533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-84582.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-89381932-4	chr4	89381446	89382446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132431, intron 2 of 9)	intron (NR_132431, intron 2 of 9)	-70914.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	1.0	5.0	3.0	1.0	2.0	5.5
Merged-chr8-111821319-4	chr8	111820807	111821807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011801, intron 5 of 6)	(A)n|Simple_repeat|Simple_repeat	33003.0	NM_011801	23837.0	Mm.279437	NM_011801	ENSMUSG00000031954	Cfdp1	AA408409|Bcnt|Bucentaur|Cfdp|cp27	craniofacial development protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122392278-4	chr5	122391810	122392810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019824, intron 1 of 6)	intron (NM_019824, intron 1 of 6)	432.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157571663-2	chr2	157571163	157572163	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5302.0	NM_016916	53619.0	Mm.480461	NM_016916	ENSMUSG00000067787	Blcap	AI462828|Bc10	bladder cancer associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-100548145-4	chr4	100547624	100548624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033773, intron 9 of 9)	intron (NM_001033773, intron 9 of 9)	69257.0	NM_001033773	381534.0	Mm.318133	NM_001033773	ENSMUSG00000069733	Ube2u	-	ubiquitin-conjugating enzyme E2U (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45529708-4	chr7	45529211	45530211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148927, intron 1 of 19)	intron (NM_148927, intron 1 of 19)	3381.0	NM_148927	69217.0	Mm.274158	NM_148927	ENSMUSG00000040428	Plekha4	2410005C22Rik|C88169|Pepp1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32757510-4	chr19	32757022	32758022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008960)	promoter-TSS (NM_008960)	-55.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70632176-1	chr8	70631676	70632676	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_011819)	promoter-TSS (NM_011819)	-81.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	1.0	29.5	14.0	11.0	9.5	13.5
Merged-chr7-75656650-4	chr7	75656125	75657125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 8 of 36)	L1M4|LINE|L1	-191713.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	2.5	39.5	14.0	8.0	36.0	32.5
Merged-chr2-109904267-4	chr2	109903689	109904689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033473, intron 4 of 4)	intron (NR_033473, intron 4 of 4)	9130.0	NR_033473	100038454.0	Mm.365649	NR_033473	ENSMUSG00000063751	Platr8	Gm13939	pluripotency associated transcript 8	ncRNA	6.5	7.0	4.5	0.0	3.0	1.0
Merged-chr9-65561598-2	chr9	65561098	65562098	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 3 of 5)	intron (NM_153119, intron 3 of 5)	18489.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	5.0	12.0	16.5	6.0	16.0	10.0
Merged-chr14-75164549-4	chr14	75164072	75165072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	28147.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-72689971-4	chr11	72689445	72690445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009671)	promoter-TSS (NM_009671)	-57.0	NM_009671	11736.0	Mm.10313	NM_009671	ENSMUSG00000020790	Ankfy1	Ankhzn|ZFYVE14|mKIAA1255	ankyrin repeat and FYVE domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-18671230-3	chr19	18670715	18671715	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026120, intron 1 of 7)	CpG	435.0	NM_026120	67383.0	Mm.306602	NM_026120	ENSMUSG00000024726	Carnmt1	2410127L17Rik	carnosine N-methyltransferase 1	protein-coding	11.5	23.0	35.5	15.5	54.0	26.0
Merged-chr19-60581077-4	chr19	60580603	60581603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172096)	promoter-TSS (NM_001172096)	-80.0	NM_001172096	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	49.0	141.0	127.0	72.5	110.0	115.0
Merged-chr2-32381972-4	chr2	32381466	32382466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198001)	promoter-TSS (NM_198001)	-51.0	NM_198001	73737.0	Mm.27608	NM_198001	ENSMUSG00000039195	1110008P14Rik	C79326	RIKEN cDNA 1110008P14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-129575954-4	chr7	129575426	129576426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15937.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-33156982-4	chr12	33156485	33157485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028139, intron 2 of 3)	MIRb|SINE|MIR	9299.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	8.0	21.0	12.0	11.5	31.0	27.0
Merged-chr2-127086387-4	chr2	127085867	127086867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026678, intron 4 of 7)	B2_Mm2|SINE|B2	15710.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	36.0	48.0	33.5	20.0	55.5	32.0
Merged-chr8-36247177-4	chr8	36246686	36247686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081150, intron 1 of 11)	intron (NM_001081150, intron 1 of 11)	2330.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	53.0	147.0	106.0	91.5	190.0	137.0
Merged-chr12-79298367-2	chr12	79297867	79298867	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252562, intron 1 of 7)	intron (NM_001252562, intron 1 of 7)	1016.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79138120-4	chr12	79137618	79138618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009705, intron 2 of 7)	MLT1A1|LTR|ERVL-MaLR	7330.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	88.0	182.0	112.0	117.5	207.0	150.0
Merged-chr7-4792862-4	chr7	4792335	4793335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009081)	promoter-TSS (NM_009081)	-130.0	NM_009081	19943.0	Mm.379002	NM_009081	ENSMUSG00000030432	Rpl28	D7Wsu21e	ribosomal protein L28	protein-coding	18.5	23.5	15.0	14.0	9.5	21.0
Merged-chr2-75776745-3	chr2	75776242	75777242	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55435.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	9.0	31.5	12.5	6.5	9.5	4.0
Merged-chr7-109986390-4	chr7	109985855	109986855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153525)	promoter-TSS (NM_153525)	-125.0	NM_153525	233724.0	Mm.43212	NM_153525	ENSMUSG00000047554	Tmem41b	1500015G02Rik|1500031M19Rik|AU018901|D7Ertd70e|D7Ertd743e	transmembrane protein 41B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67608314-4	chr5	67607834	67608834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033415, exon 1 of 2)	5' UTR (NM_001033415, exon 1 of 2)	451.0	NM_001033415	330096.0	Mm.442747	NM_001033415	ENSMUSG00000050010	Shisa3	D830007B15Rik	shisa family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116464331-4	chr4	116463819	116464819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008641)	promoter-TSS (NM_008641)	-138.0	NM_008641	17776.0	Mm.9287	NM_008641	ENSMUSG00000003810	Mast2	MAST205|Mtssk	microtubule associated serine/threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-72351533-4	chr2	72351057	72352057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 2 of 19)	intron (NM_023057, intron 2 of 19)	65856.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143764049-2	chr7	143763549	143764549	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_203492, exon 2 of 2)	3' UTR (NM_203492, exon 2 of 2)	2944.0	NM_203492	381974.0	Mm.297839	NM_203492	ENSMUSG00000050276	Mrgprg	Gm1098|Mrgg	MAS-related GPR, member G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134189956-4	chr6	134189451	134190451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	154251.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67847521-4	chr5	67847007	67848007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009727)	promoter-TSS (NM_009727)	-76.0	NM_001038999	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	18.5	61.5	47.5	4.5	27.0	19.5
Merged-chr18-90578963-2	chr18	90578463	90579463	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362365)	promoter-TSS (NM_001362365)	-862.0	NM_001362365	108168395.0	Mm.391131	NM_001362365	ENSMUSG00000110277	Gm45871	-	predicted gene 45871	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86064746-4	chr1	86064244	86065244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027357, exon 1 of 25)	5' UTR (NM_027357, exon 1 of 25)	125.0	NM_027357	70247.0	Mm.280013	NM_027357	ENSMUSG00000026229	Psmd1	2410026J11Rik|P112|S1	proteasome (prosome, macropain) 26S subunit, non-ATPase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-19855088-4	chr13	19854562	19855562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30805.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	5.0	0.0	8.0	21.0	5.5	1.0
Merged-chr14-52020700-4	chr14	52020201	52021201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253694)	promoter-TSS (NM_001253694)	32.0	NM_001253696	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	88.5	217.0	185.5	98.5	219.0	140.0
Merged-chr6-125349523-6	chr6	125348928	125349928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011609)	promoter-TSS (NM_011609)	-295.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	17.5	103.5	57.0	11.5	108.0	60.0
Merged-chr16-57391574-4	chr16	57391078	57392078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	LSU-rRNA_Hsa|rRNA|rRNA	38301.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173337815-4	chr2	173337314	173338314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61281.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72120100-4	chr6	72119610	72120610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045163)	TTS (NR_045163)	2830.0	NR_045163	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71223491-4	chr6	71222985	71223985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160127, intron 6 of 9)	MLT1B|LTR|ERVL-MaLR	23606.0	NM_017399	14080.0	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165321698-4	chr2	165321207	165322207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302752)	promoter-TSS (NM_001302752)	-881.0	NM_001302752	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136567327-4	chr5	136566853	136567853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009986, exon 1 of 24)	5' UTR (NM_009986, exon 1 of 24)	137.0	NM_001291234	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124722077-4	chr8	124721589	124722589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026855)	promoter-TSS (NM_026855)	-50.0	NM_026855	68865.0	Mm.22779	NM_026855	ENSMUSG00000031982	Arv1	1110067L22Rik|AI461928|AW121084	ARV1 homolog, fatty acid homeostasis modulator	protein-coding	11.5	18.0	17.0	3.5	35.5	9.0
Merged-chr6-86473359-2	chr6	86472859	86473859	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_131126, intron 1 of 2)	intron (NR_131126, intron 1 of 2)	7471.0	NR_131125	320486.0	Mm.391625	NR_131125	ENSMUSG00000085589	A430078I02Rik	T25621	RIKEN cDNA A430078I02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-33653471-4	chr8	33652983	33653983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010344, exon 1 of 13)	5' UTR (NM_010344, exon 1 of 13)	245.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	167.0	315.5	356.5	47.0	94.5	108.0
Merged-chr2-31082875-4	chr2	31082393	31083393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	13607.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31559082-4	chr17	31558584	31559584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-5689.0	NR_027493	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46500892-2	chr4	46500392	46501392	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_053179, exon 5 of 6)	exon (NM_053179, exon 5 of 6)	11563.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70562419-4	chr11	70561917	70562917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045959)	promoter-TSS (NM_001045959)	-464.0	NM_001045964	50932.0	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	14.5	32.0	19.5	15.5	26.0	23.5
Merged-chr11-53819013-4	chr11	53818492	53819492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 2 of 3)	intron (NR_033332, intron 2 of 3)	40264.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70797497-3	chr8	70796990	70797990	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106099)	promoter-TSS (NR_106099)	-645.0	NR_106099	102466823.0		NR_106099	ENSMUSG00000099031	Mir7240	Gm27487|mmu-mir-7240	microRNA 7240	ncRNA	1.0	10.0	3.5	0.5	7.0	6.5
Merged-chr1-180255689-2	chr1	180255189	180256189	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128605, intron 1 of 10)	intron (NM_001128605, intron 1 of 10)	611.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-5080155-4	chr7	5079626	5080626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252454)	promoter-TSS (NM_001252454)	-109.0	NM_010147	13854.0	Mm.3091	NM_010147	ENSMUSG00000035203	Epn1	AA269831|Ibp1	epsin 1	protein-coding	77.0	198.0	194.5	75.0	260.0	199.5
Merged-chr10-99179772-4	chr10	99179241	99180241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	71606.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-69664230-4	chr2	69663737	69664737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028284, intron 9 of 11)	RSINE1|SINE|B4	-5883.0	NM_001081087	228003.0	Mm.178784	NM_001081087	ENSMUSG00000075307	Klhl41	Gm112|Kbtbd10|SARCOSIN	kelch-like 41	protein-coding	9.5	26.0	17.5	5.5	34.0	28.0
Merged-chr13-21716829-4	chr13	21716331	21717331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178206)	promoter-TSS (NM_178206)	419.0	NM_178182	319191.0	Mm.14767	NM_178182	ENSMUSG00000071516	Hist1h2ai	H2a-291A	histone cluster 1, H2ai	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77971321-4	chr10	77970838	77971838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1466.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102244057-4	chr7	102243544	102244544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	6074.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	15.5	9.5	12.5	5.0	28.5	10.5
Merged-chr10-8741187-4	chr10	8740681	8741681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 14 of 19)	intron (NM_175155, intron 14 of 19)	144889.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	10.0	16.0	12.5	7.5	8.5	15.0
Merged-chr12-105962827-4	chr12	105962332	105963332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-47431.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	0.0	7.5	1.5	0.0	6.0	1.5
Merged-chr11-54866522-5	chr11	54866052	54867052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008248, exon 1 of 3)	exon (NM_008248, exon 1 of 3)	169.0	NM_008248	15254.0	Mm.425	NM_008248	ENSMUSG00000020267	Hint1	AA673479|Hint|Ipk1|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31081437-4	chr6	31080932	31081932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18339.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87708067-2	chr16	87707567	87708567	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	9113.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143472205-4	chr5	143471679	143472679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 2 of 14)	intron (NM_144915, intron 2 of 14)	7686.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124715301-4	chr5	124714802	124715802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011596, intron 14 of 19)	intron (NM_011596, intron 14 of 19)	-9783.0	NM_019536	56087.0	Mm.261014	NM_019536	ENSMUSG00000038011	Dnah10	Dnahc10	dynein, axonemal, heavy chain 10	protein-coding	10.0	18.5	17.0	17.0	22.0	16.5
Merged-chr9-102717029-2	chr9	102716529	102717529	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019764)	promoter-TSS (NM_019764)	-775.0	NM_019764	56332.0	Mm.21145	NM_019764	ENSMUSG00000032531	Amotl2	AW549739|C79691|Lccp|MASCOT|mKIAA0989	angiomotin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr8-70342376-4	chr8	70341845	70342845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030680, intron 3 of 23)	intron (NM_030680, intron 3 of 23)	10934.0	NM_030680	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	29.0	59.0	60.5	23.5	98.5	68.5
Merged-chr11-79870604-4	chr11	79870069	79871069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91818.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-30778488-4	chr10	30777989	30778989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 1 of 14)	intron (NM_001358842, intron 1 of 14)	24837.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32358598-4	chr11	32358102	32359102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177364, intron 1 of 12)	MIR|SINE|MIR	10791.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	0.0	0.0	3.0	1.5	1.0	5.0
Merged-chr14-47188889-4	chr14	47188385	47189385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008102, intron 1 of 5)	CpG	528.0	NM_008102	14528.0	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTP-CH-I|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	121.0	280.0	260.5	113.0	325.0	221.5
Merged-chr4-134000944-4	chr4	134000428	134001428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026144)	promoter-TSS (NM_026144)	-64.0	NM_026144	67422.0	Mm.100290	NM_026144	ENSMUSG00000012117	Dhdds	3222401G21Rik|CIT|DS|HDS|W91638	dehydrodolichyl diphosphate synthase	protein-coding	55.5	126.0	96.0	29.0	101.5	81.5
Merged-chr12-21287479-4	chr12	21286977	21287977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018813, intron 1 of 17)	intron (NM_018813, intron 1 of 17)	1180.0	NM_018813	54451.0	Mm.356778	NM_018813	ENSMUSG00000054309	Cpsf3	-	cleavage and polyadenylation specificity factor 3	protein-coding	88.5	307.5	201.0	94.0	283.5	141.0
Merged-chr5-135468501-4	chr5	135468001	135469001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	-73955.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-71015829-4	chr12	71015310	71016310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045055)	promoter-TSS (NR_045055)	13.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	18.0	56.5	60.0	52.0	48.0	38.0
Merged-chr2-120100047-4	chr2	120099541	120100541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 4 of 5)	intron (NM_133838, intron 4 of 5)	54534.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	7.0	22.0	17.5	7.0	16.5	9.0
Merged-chr17-33759922-4	chr17	33759422	33760422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008997, intron 1 of 4)	CpG	564.0	NM_008997	19326.0	Mm.387587	NM_008997	ENSMUSG00000077450	Rab11b	A730055L17Rik	RAB11B, member RAS oncogene family	protein-coding	0.0	4.5	0.5	1.0	4.0	1.5
Merged-chr9-44320314-4	chr9	44319749	44320749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027909)	promoter-TSS (NM_027909)	33.0	NM_001359259	71764.0	Mm.491174	NM_027909	ENSMUSG00000032120	C2cd2l	1300006O23Rik|Tmem24	C2 calcium-dependent domain containing 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47735516-4	chr14	47735024	47736024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347525, intron 39 of 39)	intron (NM_001347525, intron 39 of 39)	71768.0	NM_001347522	16709.0	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	11.0	9.0	10.0	8.5	17.0	19.5
Merged-chr7-111083165-4	chr7	111082671	111083671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040131)	promoter-TSS (NM_001040131)	-141.0	NM_013507	13690.0	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146676689-4	chr5	146676179	146677179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-91440.0	NM_001359057	14738.0	Mm.153539	NM_008151	ENSMUSG00000041468	Gpr12	Gpcr01|Gpcr12|Gpcr20|Gpcr21	G-protein coupled receptor 12	protein-coding	5.5	4.5	3.0	0.0	0.0	1.5
Merged-chr4-63557470-4	chr4	63556957	63557957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1306.0	NM_001356355	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134120880-4	chr6	134120380	134121380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	85180.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	37.5	67.0	44.5	16.5	45.5	31.0
Merged-chr12-69214550-4	chr12	69214039	69215039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011133, intron 6 of 18)	intron (NM_011133, intron 6 of 18)	13651.0	NM_011133	18974.0	Mm.9199	NM_011133	ENSMUSG00000020974	Pole2	-	polymerase (DNA directed), epsilon 2 (p59 subunit)	protein-coding	0.0	5.5	3.0	0.0	6.0	4.5
Merged-chr8-18595568-4	chr8	18595061	18596061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_173189, exon 1 of 14)	5' UTR (NM_173189, exon 1 of 14)	430.0	NM_173189	244329.0	Mm.235296	NM_173189	ENSMUSG00000039842	Mcph1	5430437K10Rik|BRIT1|D030046N04Rik|MCT|Tg(HLA-A2.1)1Enge	microcephaly, primary autosomal recessive 1	protein-coding	11.5	26.5	42.0	11.5	26.0	47.5
Merged-chr16-91523116-4	chr16	91522619	91523619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	4425.0	NR_105786	102465190.0		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69127131-4	chr3	69126624	69127624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008467)	promoter-TSS (NM_008467)	-32.0	NM_008467	16649.0	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	84.5	180.5	150.0	59.0	165.5	124.5
Merged-chr18-60767145-7	chr18	60766640	60767640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7456.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45351100-4	chr14	45350605	45351605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019637)	promoter-TSS (NM_019637)	-81.0	NM_019637	56291.0	Mm.202561	NM_019637	ENSMUSG00000053205	Styx	0610039A20Rik|hStyxb	serine/threonine/tyrosine interaction protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147904858-4	chr4	147904315	147905315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285922)	promoter-TSS (NM_001285922)	94.0	NM_001285922	170731.0	Mm.154312	NM_133201	ENSMUSG00000029020	Mfn2	D630023P19Rik|Fzo	mitofusin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-112011378-4	chr8	112010887	112011887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130868)	promoter-TSS (NM_001130868)	28.0	NM_020584	57321.0	Mm.213064	NM_020584	ENSMUSG00000033430	Terf2ip	Rap1	telomeric repeat binding factor 2, interacting protein	protein-coding	3.5	16.5	22.5	6.0	23.5	24.5
Merged-chr11-45697597-4	chr11	45697111	45698111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110472.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	17.0	40.5	36.0	9.0	50.0	46.0
Merged-chr9-119088616-1	chr9	119088116	119089116	+	1000.0	f0_c57.idr	promoter-TSS (NM_001293648)	promoter-TSS (NM_001293648)	-355.0	NM_001293648	18799.0	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding	2.0	0.0	5.5	1.5	3.0	2.5
Merged-chr17-45767175-4	chr17	45766695	45767695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	32689.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	9.5	12.0	0.0	3.5	10.5	10.5
Merged-chr8-84202646-4	chr8	84202112	84203112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5906.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	34.0	66.0	53.0	13.5	96.0	32.5
Merged-chr19-41321376-4	chr19	41320879	41321879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 8 of 16)	intron (NM_031376, intron 8 of 16)	-57375.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	16.5	93.0	56.5	40.5	59.0	42.5
Merged-chr15-98933964-4	chr15	98933470	98934470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011654, intron 1 of 3)	CpG	420.0	NM_011654	22143.0	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7473684-4	chr10	7473208	7474208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029975)	promoter-TSS (NM_029975)	-231.0	NM_029975	77777.0	Mm.442442	NM_029975	ENSMUSG00000079685	Ulbp1	A430108B07Rik|MULT1	UL16 binding protein 1	protein-coding	5.0	11.0	4.5	0.0	1.5	4.0
Merged-chr10-83648746-4	chr10	83648196	83649196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145220)	promoter-TSS (NM_145220)	-32.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95790848-4	chr15	95790342	95791342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253813)	promoter-TSS (NM_001253813)	-1.0	NM_175344	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-70643771-4	chr18	70643296	70644296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75504.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	7.5	16.5	4.0	7.0	5.0	3.0
Merged-chr16-23288128-2	chr16	23287628	23288628	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-2342.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-93968416-4	chr11	93967934	93968934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008704)	promoter-TSS (NM_008704)	87.0	NM_008704	18102.0	Mm.439702	NM_008704	ENSMUSG00000037601	Nme1	AL024257|NDPK-A|NM23-M1|NM23A	NME/NM23 nucleoside diphosphate kinase 1	protein-coding	75.0	186.0	128.0	77.0	119.0	112.5
Merged-chr10-62449253-2	chr10	62448753	62449753	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027926)	promoter-TSS (NR_027926)	93.0	NR_027926	74706.0	Mm.402550	NR_027926	ENSMUSG00000097129	4930507D05Rik	-	RIKEN cDNA 4930507D05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39241160-4	chr18	39240654	39241654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 14 of 21)	intron (NM_001361073, intron 14 of 21)	246091.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4273989-4	chr7	4273467	4274467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011093)	promoter-TSS (NM_011093)	-176.0	NM_011093	18729.0	Mm.326531	NM_008848		Pira6	12M1|Pira10|p91B	paired-Ig-like receptor A6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133673220-4	chr4	133672712	133673712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145956)	promoter-TSS (NM_001145956)	-46.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	102.5	226.0	107.5	103.5	209.5	120.5
Merged-chr2-34406859-4	chr2	34406382	34407382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177345)	promoter-TSS (NM_177345)	31.0	NM_001290626	227743.0	Mm.270866	NM_177345	ENSMUSG00000038696	Mapkap1	AI591529|D230039K05Rik|Sin1	mitogen-activated protein kinase associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101115743-4	chr11	101115218	101116218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155071, intron 1 of 6)	intron (NR_155071, intron 1 of 6)	4123.0	NM_026501	67998.0	Mm.33881	NM_026501	ENSMUSG00000017802	Retreg3	1300010M03Rik|4933404C01Rik|AI551748|Fam134c	reticulophagy regulator family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-78265193-4	chr16	78264686	78265686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9732.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51836472-2	chr13	51835972	51836972	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-10203.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139192721-4	chr4	139192225	139193225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009798)	promoter-TSS (NM_009798)	-174.0	NM_009798	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	68.0	193.0	97.5	74.5	167.0	117.5
Merged-chr7-130839568-4	chr7	130839063	130840063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26161.0	NM_133942	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-26579520-4	chr14	26579035	26580035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134465)	promoter-TSS (NM_001134465)	-15.0	NM_001134465	211922.0	Mm.260512	NM_145969	ENSMUSG00000040818	Dennd6a	Fam116a	DENN/MADD domain containing 6A	protein-coding	45.0	190.0	125.0	75.5	129.0	153.5
Merged-chr12-69362591-2	chr12	69362091	69363091	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5415.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-10533149-4	chr18	10532681	10533681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083628, intron 19 of 32)	intron (NM_001083628, intron 19 of 32)	77171.0	NM_001081222	77805.0	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26981860-4	chr8	26981358	26982358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001101502)	TTS (NM_001101502)	4522.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-175880668-4	chr1	175880162	175881162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012012)	promoter-TSS (NM_012012)	-116.0	NM_012012	26909.0	Mm.283046	NM_012012	ENSMUSG00000039748	Exo1	5730442G03Rik|Msa	exonuclease 1	protein-coding	17.5	37.5	13.5	1.5	27.5	14.5
Merged-chr13-64378862-3	chr13	64378359	64379359	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8339.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	1.0	11.5	5.0	28.0	57.0	20.0
Merged-chr13-74317337-4	chr13	74316840	74317840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011051)	promoter-TSS (NM_011051)	-14.0	NM_001359996	18570.0	Mm.24254	NM_011051	ENSMUSG00000021576	Pdcd6	AV299538|Alg2|MA-3|PS2|alg-2	programmed cell death 6	protein-coding	0.5	4.5	2.0	3.5	8.0	4.5
Merged-chr17-70707154-4	chr17	70706657	70707657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360665, intron 9 of 14)	intron (NM_001360665, intron 9 of 14)	139620.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	2.5	0.0	6.5	4.0	0.0	1.0
Merged-chr9-44571133-4	chr9	44570634	44571634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33758.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	1.0	9.0	6.0	3.0	3.5	2.0
Merged-chr13-62684832-4	chr13	62684341	62685341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60659.0	NM_173381	211378.0	Mm.247448	NM_173381	ENSMUSG00000072066	6720489N17Rik	9330128I06	RIKEN cDNA 6720489N17 gene	protein-coding	0.0	1.5	2.5	0.0	0.0	1.0
Merged-chr11-108222820-4	chr11	108222339	108223339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	121049.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120002211-4	chr9	120001708	120002708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17466.0	NM_153287	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44304967-3	chr7	44304480	44305480	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009131, exon 4 of 4)	exon (NM_009131, exon 4 of 4)	1979.0	NM_009131	20256.0	Mm.20428	NM_009131	ENSMUSG00000004473	Clec11a	AW457320|Clecsf3|Scgf	C-type lectin domain family 11, member a	protein-coding	1.5	11.5	11.0	1.0	13.5	9.0
Merged-chr14-66235773-4	chr14	66235301	66236301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-21977.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46196253-4	chr4	46195731	46196731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011728)	promoter-TSS (NM_011728)	80.0	NM_011728	22590.0	Mm.247036	NM_011728	ENSMUSG00000028329	Xpa	AI573865|Xpac	xeroderma pigmentosum, complementation group A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25622396-4	chr15	25621883	25622883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019472)	promoter-TSS (NM_019472)	-167.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132253823-2	chr2	132253323	132254323	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011045)	promoter-TSS (NM_011045)	-643.0	NM_011045	18538.0	Mm.7141	NM_011045	ENSMUSG00000027342	Pcna	-	proliferating cell nuclear antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51526332-4	chr10	51525837	51526837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS2|LTR|ERV1	35439.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84878049-4	chr17	84877563	84878563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78678.0	NM_001159497	19043.0	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47594330-4	chr6	47593803	47594803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007971, intron 1 of 19)	CpG	727.0	NM_001146689	14056.0	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	33.5	124.5	70.5	28.5	60.5	44.5
Merged-chr16-4624924-4	chr16	4624362	4625362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025571)	promoter-TSS (NM_025571)	84.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123930706-4	chr5	123930272	123931272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134767)	promoter-TSS (NM_001134767)	83.0	NM_001134767	208908.0	Mm.243679	NM_001134767	ENSMUSG00000061882	Ccdc62	AI661708|G1-485-3|Gm150|repro29	coiled-coil domain containing 62	protein-coding	27.0	63.5	58.0	29.5	101.5	67.0
Merged-chr4-59083629-4	chr4	59083112	59084112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48456.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131108997-1	chr1	131108497	131109497	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-11154.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	6.0	0.0	5.5	1.5	5.5	2.0
Merged-chr8-84979383-2	chr8	84978883	84979883	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008416)	promoter-TSS (NM_008416)	-635.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	114.0	288.5	154.5	141.5	259.5	193.0
Merged-chr5-147063514-3	chr5	147063026	147064026	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	13046.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	38.0	58.0	37.5	152.0	386.0	260.5
Merged-chr3-126625308-4	chr3	126624829	126625829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	28378.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	140.5	348.0	205.0	184.5	240.5	216.5
Merged-chr9-105395403-4	chr9	105394897	105395897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172461)	promoter-TSS (NM_172461)	35.0	NR_152139	66595.0	Mm.84941	NM_025651	ENSMUSG00000032567	Aste1	1100001A21Rik|AV006403	asteroid homolog 1	protein-coding	189.5	368.5	281.0	105.0	235.0	217.5
Merged-chr7-6362768-4	chr7	6362230	6363230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025163)	promoter-TSS (NM_001025163)	-578.0	NM_001025163	330463.0	Mm.136456	NM_177888	ENSMUSG00000055150	Zfp78	A330079D15|KRAB12|Zfp77	zinc finger protein 78	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31849486-2	chr17	31848938	31849938	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010831, intron 9 of 13)	intron (NM_010831, intron 9 of 13)	6366.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	0.0	3.0	0.0	1.0	0.0	1.5
Merged-chr19-40678683-4	chr19	40678172	40679172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	18902.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	53.0	129.5	91.5	75.0	222.0	121.5
Merged-chr12-84038835-2	chr12	84038335	84039335	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_134247, exon 1 of 3)	exon (NM_134247, exon 1 of 3)	456.0	NM_134247	171282.0	Mm.482217	NM_134247	ENSMUSG00000052392	Acot4	B430212I04Rik|PTE-Ib|Pte1b|Pte2b	acyl-CoA thioesterase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69881019-4	chr11	69880519	69881519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153143)	promoter-TSS (NM_153143)	-34.0	NM_153143	216858.0	Mm.239498	NM_153143	ENSMUSG00000046731	Kctd11	AF465352|Ren	potassium channel tetramerisation domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71042058-4	chr2	71041537	71042537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 1 of 9)	Lx8|LINE|L1	13569.0	NM_145524	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107132175-4	chr11	107131638	107132638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176850)	promoter-TSS (NM_176850)	-216.0	NM_001359590	207165.0	Mm.343986	NM_176850	ENSMUSG00000040481	Bptf	9430093H17Rik|Falz	bromodomain PHD finger transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46453323-2	chr4	46452823	46453823	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_130889, intron 1 of 6)	PB1D10|SINE|Alu	2397.0	NM_130889	67628.0	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-59260241-4	chr14	59259711	59260711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164329)	promoter-TSS (NM_001164329)	5.0	NM_001164329	628693.0	Mm.479519	NM_001164329	ENSMUSG00000090881	Gm6904	EG628693	predicted gene 6904	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-40511805-4	chr8	40511359	40512359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011135)	promoter-TSS (NM_011135)	76.0	NM_033560	52348.0	Mm.489696	NM_033560	ENSMUSG00000031600	Vps37a	2210018P21Rik|4930592A21Rik|AW261445|D8Ertd531e	vacuolar protein sorting 37A	protein-coding	24.0	83.5	90.0	47.5	80.0	66.5
Merged-chr9-57646825-4	chr9	57646333	57647333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 2 of 14)	MIR|SINE|MIR	-1180.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-42421694-4	chr6	42421206	42422206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12829.0	NM_207028	387353.0	Mm.377914	NM_207028	ENSMUSG00000048284	Tas2r126	T2R12|T2R26|Tas2r26|Tas2r41|mGR26|mt2r35	taste receptor, type 2, member 126	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25318575-4	chr10	25318050	25319050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19387.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	16.5	93.0	48.0	62.5	82.5	47.5
Merged-chr14-13961149-4	chr14	13960644	13961644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359900, intron 1 of 8)	CpG	169.0	NM_001285780	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96759289-4	chr9	96758789	96759789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6273.0	NR_102295	319707.0	Mm.392191	NR_102293	ENSMUSG00000101581	C430002N11Rik	-	RIKEN cDNA C430002N11 gene	ncRNA	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr5-139150072-4	chr5	139149574	139150574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081265)	promoter-TSS (NM_001081265)	-73.0	NM_001359098	19085.0	Mm.306163	NM_008923	ENSMUSG00000025855	Prkar1b	AI385716|RIbeta	protein kinase, cAMP dependent regulatory, type I beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34217013-4	chr6	34216458	34217458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39904.0	NM_021435	58246.0	Mm.245527	NM_021435	ENSMUSG00000018999	Slc35b4	4930474D06Rik|AB041549|AW494345	solute carrier family 35, member B4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98328524-4	chr7	98328021	98329021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger9a|DNA|TcMar-Tigger	-7313.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61120753-4	chr18	61120240	61121240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 11 of 21)	intron (NM_001037859, intron 11 of 21)	3272.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	10.5	15.5	10.0	2.5	8.5	4.0
Merged-chr17-46328041-4	chr17	46327528	46328528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170680)	promoter-TSS (NM_170680)	-5.0	NM_170680	224814.0	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71831784-4	chr6	71831264	71832264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362138, intron 1 of 13)	CpG	444.0	NM_001253686	76614.0	Mm.235123	NM_029673	ENSMUSG00000052337	Immt	1700082C19Rik|D830041H16Rik|HMP|P87|P87/89|P89	inner membrane protein, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135966392-2	chr5	135965892	135966892	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160366, intron 4 of 10)	intron (NM_001160366, intron 4 of 10)	8084.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	4.0	3.0	0.5	0.0	3.0	0.0
Merged-chr6-82766690-4	chr6	82766181	82767181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 1 of 17)	intron (NM_013820, intron 1 of 17)	7773.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32747016-2	chr5	32746535	32747535	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347332)	promoter-TSS (NM_001347332)	-693.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	81.0	170.5	136.5	89.5	155.5	126.5
Merged-chr7-45712578-2	chr7	45712078	45713078	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_203280, exon 4 of 7)	exon (NM_203280, exon 4 of 7)	2629.0	NM_020011	56632.0	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136185577-4	chr4	136185093	136186093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177733, intron 5 of 6)	intron (NM_177733, intron 5 of 6)	4811.0	NM_001305399	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	9.0	35.0	21.5	15.0	43.0	30.0
Merged-chr5-124629011-4	chr5	124628526	124629526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011596)	promoter-TSS (NM_011596)	-26.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-80338117-4	chr8	80337601	80338601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-155944.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32163640-4	chr16	32163130	32164130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146069, intron 1 of 3)	intron (NM_146069, intron 1 of 3)	1964.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79456624-4	chr15	79456092	79457092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14449.0	NM_001359863	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35218859-7	chr17	35218341	35219341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13490.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	43.0	99.0	54.5	56.0	162.0	60.0
Merged-chr10-94913564-4	chr10	94913085	94914085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 2 of 30)	intron (NM_018797, intron 2 of 30)	30993.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-21373641-4	chr12	21373165	21374165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277266)	promoter-TSS (NM_001277266)	-33.0	NM_009615	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	234.0	429.0	335.0	154.0	421.0	293.5
Merged-chr3-90080295-4	chr3	90079770	90080770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357581, intron 1 of 8)	CpG	749.0	NM_001293749	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	24.5	139.5	102.0	50.0	132.0	83.0
Merged-chr13-84222298-4	chr13	84221791	84222791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_138587)	promoter-TSS (NR_138587)	-5.0	NR_029418	72745.0	Mm.295063	NM_175187	ENSMUSG00000035762	Tmem161b	2810446P07Rik|AI843389	transmembrane protein 161B	protein-coding	4.5	17.5	7.0	5.0	11.0	7.0
Merged-chr14-65345662-4	chr14	65345181	65346181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12995.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	44.5	76.0	51.5	13.5	70.5	30.0
Merged-chr5-5419434-4	chr5	5418953	5419953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39202.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75659450-4	chr11	75658907	75659907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080774, intron 5 of 31)	L2a|LINE|L2	3392.0	NM_001080775	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	0.5	13.0	6.0	1.0	21.5	12.0
Merged-chr2-112284533-4	chr2	112284007	112285007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133648)	promoter-TSS (NM_133648)	-181.0	NM_133648	107723.0	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	1.0	6.0	1.0	0.0	1.5	0.0
Merged-chr13-28617653-4	chr13	28617159	28618159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045054, intron 5 of 7)	intron (NR_045054, intron 5 of 7)	93214.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-105785129-4	chr12	105784658	105785658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011112, intron 1 of 21)	CpG	461.0	NM_001347440	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	51.5	122.0	57.5	34.0	97.5	77.5
Merged-chr6-57773995-4	chr6	57773514	57774514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 3 of 4)	intron (NM_146168, intron 3 of 4)	51111.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125339237-4	chr5	125338746	125339746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	1848.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.0	5.0	5.5	3.0	1.0	2.5
Merged-chr17-35045317-4	chr17	35044812	35045812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001146215, exon 4 of 25)	exon (NM_001146215, exon 4 of 25)	1310.0	NM_013600	17687.0	Mm.24192	NM_013600	ENSMUSG00000007035	Msh5	Mut5	mutS homolog 5	protein-coding	1.0	13.5	10.5	0.5	2.0	2.0
Merged-chr9-65908947-4	chr9	65908473	65909473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019797)	promoter-TSS (NM_019797)	-37.0	NM_173185	214897.0	Mm.325816	NM_173185	ENSMUSG00000032384	Csnk1g1	9130020E21Rik	casein kinase 1, gamma 1	protein-coding	13.0	40.0	22.5	16.0	26.0	20.5
Merged-chr17-84273065-4	chr17	84272571	84273571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 29 of 37)	intron (NM_183021, intron 29 of 37)	-85124.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55161489-4	chr14	55160977	55161977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44542.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34028943-4	chr1	34028448	34029448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134448, intron 1 of 97)	L1MEc|LINE|L1	17123.0	NM_134448	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-31632658-2	chr18	31632158	31633158	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1710.0	NM_001357554	269003.0	Mm.194538	NM_172965	ENSMUSG00000024260	Sap130	2610304F09Rik|6720406D06	Sin3A associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160872673-3	chr2	160872191	160873191	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177263, intron 1 of 3)	CpG	299.0	NM_177263	320799.0	Mm.436734	NM_177263	ENSMUSG00000035877	Zhx3	1810059C13Rik|4932418O04Rik|9530010N21Rik|Tix1|mKIAA0395	zinc fingers and homeoboxes 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108257036-4	chr3	108256518	108257518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011967)	promoter-TSS (NM_011967)	92.0	NM_011967	26442.0	Mm.208883	NM_011967	ENSMUSG00000068749	Psma5	ZETA	proteasome (prosome, macropain) subunit, alpha type 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105662066-4	chr5	105661538	105662538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37931.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	27.5	40.0	50.0	103.5	264.5	195.0
Merged-chr14-57999247-4	chr14	57998684	57999684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028643)	promoter-TSS (NM_028643)	78.0	NM_028643	68514.0	Mm.26834	NM_028643	ENSMUSG00000021973	Micu2	1110008L20Rik|4833427E09Rik|AU041871|Efha1|Smhs2	mitochondrial calcium uptake 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63129170-4	chr14	63128676	63129676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	6714.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-112160354-4	chr10	112159864	112160864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3257.0	NM_001310675	353025.0	Mm.194428	NM_178278	ENSMUSG00000035694	Caps2	D630005B03Rik	calcyphosphine 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180972358-4	chr1	180971862	180972862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144794, intron 20 of 22)	intron (NM_144794, intron 20 of 22)	29844.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89236664-2	chr3	89236164	89237164	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_121683, intron 9 of 10)	intron (NR_121683, intron 9 of 10)	7608.0	NM_013605	17829.0	Mm.16193	NM_013605	ENSMUSG00000042784	Muc1	CD227|EMA|Muc-1	mucin 1, transmembrane	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53313326-4	chr19	53312779	53313779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	CpG	1834.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-137411631-4	chr7	137411147	137412147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029886)	promoter-TSS (NM_029886)	-891.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73433679-4	chr14	73433172	73434172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48383.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-50494235-4	chr2	50493752	50494752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	139227.0	NR_154590	102634280.0		NR_154590		Gm48908	-	predicted gene 48908	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-93519111-4	chr15	93518600	93519600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033217, intron 1 of 7)	CpG	76791.0	NM_001033217	106042.0	Mm.150314	NM_001033217	ENSMUSG00000036158	Prickle1	1110058P22Rik|AW215793|Prickle|b2b019Clo|mpk1	prickle planar cell polarity protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66060534-4	chr7	66060046	66061046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152094, exon 1 of 8)	non-coding (NR_152094, exon 1 of 8)	210.0	NM_021336	68981.0	Mm.22362	NM_021336	ENSMUSG00000030512	Snrpa1	1500015N06Rik	small nuclear ribonucleoprotein polypeptide A'	protein-coding	8.5	4.0	2.0	3.5	3.5	15.0
Merged-chr11-16988037-4	chr11	16987541	16988541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 5 of 9)	intron (NM_019549, intron 5 of 9)	20677.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167802791-4	chr2	167802270	167803270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111593.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23993402-4	chr16	23992893	23993893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4541.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31512683-4	chr5	31512189	31513189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133756, exon 14 of 14)	3' UTR (NM_133756, exon 14 of 14)	14073.0	NM_028150	72195.0	Mm.164187	NM_028150	ENSMUSG00000053134	Supt7l	2610524B01Rik|6030455L14Rik	suppressor of Ty 7-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69418990-4	chr11	69418478	69419478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5303.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62661717-4	chr4	62661221	62662221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134257, intron 10 of 15)	intron (NM_134257, intron 10 of 15)	-12253.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-117817193-4	chr6	117816693	117817693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23988.0	NM_001346649	232337.0	Mm.290847	NM_177684	ENSMUSG00000059689	Zfp637	AI646709|BC021601|Znf32	zinc finger protein 637	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103361593-4	chr11	103361102	103362102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205236, intron 2 of 17)	intron (NM_001205236, intron 2 of 17)	2090.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	96.5	213.0	159.0	96.0	216.5	157.0
Merged-chr3-108865321-4	chr3	108864806	108865806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165965, intron 8 of 11)	intron (NM_001165965, intron 8 of 11)	24702.0	NM_177091	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	4.0	15.5	9.0	7.5	20.5	19.0
Merged-chr9-7784770-2	chr9	7784270	7785270	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_049191)	TTS (NR_049191)	380.0	NR_049191	100885830.0		NR_049191	ENSMUSG00000093615	Mir5618	Gm23685|mmu-mir-5618	microRNA 5618	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93668939-4	chr1	93668449	93669449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16626.0	NM_016778	51800.0	Mm.3295	NM_016778	ENSMUSG00000026278	Bok	matador|mtd	BCL2-related ovarian killer	protein-coding	2.0	6.5	2.5	0.0	2.0	0.0
Merged-chr16-32099767-4	chr16	32099264	32100264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025892)	promoter-TSS (NM_025892)	-37.0	NM_024464	72084.0	Mm.37613	NM_024464	ENSMUSG00000023791	Pigx	2010319C14Rik|PIG-X	phosphatidylinositol glycan anchor biosynthesis, class X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9276571-4	chr13	9276068	9277068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081426)	promoter-TSS (NM_001081426)	43.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143070390-2	chr7	143069884	143070884	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001115085, exon 3 of 3)	exon (NM_001115085, exon 3 of 3)	1016.0	NM_001115085	56844.0	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	0.0	0.0	0.0	0.0	0.0	7.0
Merged-chr1-177714197-4	chr1	177713700	177714700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-15614.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-54003731-4	chr17	54003224	54004224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-13093.0	NM_018751	20888.0	Mm.10108	NM_018751	ENSMUSG00000023943	Sult1c1	(PST)G|P-SULT|ST1C1|Stp2|Sult1a2|mOLFST	sulfotransferase family, cytosolic, 1C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96214067-4	chr10	96213564	96214564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12143.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99242616-4	chr5	99242137	99243137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 2 of 13)	intron (NM_181318, intron 2 of 13)	10290.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184027222-4	chr1	184026705	184027705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	6793.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80847008-4	chr12	80846527	80847527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178682, intron 2 of 5)	intron (NM_178682, intron 2 of 5)	56495.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89214403-4	chr3	89213897	89214897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013691)	promoter-TSS (NM_013691)	-62.0	NM_001357367	17827.0	Mm.280943	NM_013604	ENSMUSG00000064068	Mtx1	Gcap6|Mtx	metaxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8762938-4	chr10	8762431	8763431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	123139.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	113.0	237.5	170.5	128.0	219.0	210.0
Merged-chr8-4677917-4	chr8	4677422	4678422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	64752.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88530047-4	chr17	88529536	88530536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028658)	promoter-TSS (NM_028658)	-88.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	40.0	76.0	63.0	26.0	52.0	28.5
Merged-chr3-149393556-4	chr3	149393066	149394066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	118829.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59981035-4	chr10	59980524	59981524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21781.0	NM_026937	69090.0	Mm.155839	NM_026937	ENSMUSG00000044475	Ascc1	1810015P09Rik|AI550520|ASC1p50|CGI-18	activating signal cointegrator 1 complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87625469-4	chr1	87624988	87625988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 1 of 26)	L1MB7|LINE|L1	5176.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118976489-4	chr2	118975986	118976986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	49989.0	NM_028117	72136.0	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	1.5	0.0	2.5	0.0	5.5	5.0
Merged-chr14-43925211-4	chr14	43924717	43925717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	-1849.0	NM_053112	93725.0	Mm.429087	NM_053112	ENSMUSG00000090166	Ear10	Raf2	eosinophil-associated, ribonuclease A family, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34912330-4	chr7	34911833	34912833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008820)	promoter-TSS (NM_008820)	-74.0	NM_008820	18624.0	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4900312-4	chr7	4899804	4900804	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-14913.0	NM_170759	232816.0	Mm.27442	NM_170759	ENSMUSG00000074406	Zfp628	Zec|Znf628	zinc finger protein 628	protein-coding	36.0	83.5	57.5	2.0	13.0	13.0
Merged-chr17-31074856-4	chr17	31074364	31075364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	17170.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	266.5	652.0	507.5	220.0	482.0	355.5
Merged-chr2-143991389-7	chr2	143990887	143991887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	19876.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-177131688-4	chr1	177131168	177132168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011785, intron 1 of 12)	intron (NM_011785, intron 1 of 12)	117099.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29489183-4	chr17	29488683	29489683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1862.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	48.5	137.5	86.5	55.0	135.0	92.0
Merged-chr9-106476221-4	chr9	106475716	106476716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145619, intron 1 of 10)	intron (NM_145619, intron 1 of 10)	733.0	NM_001311150	235587.0	Mm.273659	NM_145619	ENSMUSG00000023249	Parp3	A930002C11Rik|AW990611|Adprt3|Adprtl3|PARP-3|pADPRT-3	poly (ADP-ribose) polymerase family, member 3	protein-coding	30.5	90.5	80.0	41.0	78.0	66.0
Merged-chr11-69999862-2	chr11	69999362	70000362	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007888)	promoter-TSS (NM_007888)	-764.0	NM_007888	13543.0	Mm.5114	NM_007888	ENSMUSG00000020888	Dvl2	-	dishevelled segment polarity protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64296273-2	chr1	64295772	64296772	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-174883.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137766503-2	chr5	137766003	137767003	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029805, intron 5 of 5)	B3A|SINE|B2	-12401.0	NM_001356989	69871.0	Mm.276058	NM_027242	ENSMUSG00000029725	Ppp1r35	2010007H12Rik|2010011D20Rik|AL024004	protein phosphatase 1, regulatory subunit 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-51558526-4	chr6	51558035	51559035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361577, intron 1 of 6)	intron (NM_001361577, intron 1 of 6)	13242.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32336104-4	chr17	32335583	32336583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017476, intron 6 of 13)	intron (NM_017476, intron 6 of 13)	14494.0	NM_017476	54194.0	Mm.281005	NM_017476	ENSMUSG00000002625	Akap8l	HAP95|Nakap95	A kinase (PRKA) anchor protein 8-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153161771-1	chr2	153161271	153162271	+	1000.0	f0_balb.idr	intron (NM_133847, intron 1 of 17)	intron (NM_133847, intron 1 of 17)	470.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-55257306-4	chr9	55256799	55257799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	intron (NM_032002, intron 3 of 7)	26326.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54503748-4	chr13	54503224	54504224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176987)	promoter-TSS (NM_176987)	-81.0	NM_176987	319719.0	Mm.376151	NM_176987	ENSMUSG00000043183	Simc1	4732471D19Rik	SUMO-interacting motifs containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57396441-4	chr16	57395955	57396955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	43178.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.0	1.0	0.0	0.0	2.0	0.0
Merged-chr1-165731700-4	chr1	165731182	165732182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23588.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-65604990-4	chr4	65604452	65605452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161782)	promoter-TSS (NM_001161782)	-34.0	NM_053084	69807.0	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121713399-2	chr5	121712899	121713899	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009125, intron 1 of 24)	intron (NM_009125, intron 1 of 24)	1790.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-122991383-4	chr4	122990863	122991863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	-4568.0	NM_001303121	16918.0	Mm.1055	NM_008506	ENSMUSG00000028654	Mycl	AW536278|L-myc|Lmyc-1|Lmyc1|Mycl1|bHLHe38	v-myc avian myelocytomatosis viral oncogene lung carcinoma derived	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-30576413-4	chr17	30575916	30576916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027060)	promoter-TSS (NM_027060)	-129.0	NM_027060	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	36.0	108.0	80.0	19.5	120.0	61.0
Merged-chr9-19622103-4	chr9	19621614	19622614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172918)	promoter-TSS (NM_172918)	23.0	NR_153375	244713.0	Mm.67366	NM_172918	ENSMUSG00000057551	Zfp317	4932416G03|D230022C05Rik|KRAB9|Zfp67|Zfp75|mszf40	zinc finger protein 317	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21793495-4	chr16	21793009	21794009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037957)	promoter-TSS (NR_037957)	-838.0	NR_037958	100043489.0	Mm.326535	NR_037957	ENSMUSG00000097290	1300002E11Rik	1500026P21Rik	RIKEN cDNA 1300002E11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58276220-6	chr9	58275737	58276737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	23073.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45487952-4	chr4	45487439	45488439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 2 of 5)	intron (NM_001033306, intron 2 of 5)	42889.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11134713-4	chr16	11134192	11135192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029582)	promoter-TSS (NM_029582)	-160.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123480744-4	chr9	123480247	123481247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013860, intron 1 of 7)	intron (NM_013860, intron 1 of 7)	2046.0	NM_013860	29806.0	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79714711-1	chr11	79714211	79715211	+	1000.0	f1_balb.idr	Intergenic	Intergenic	2742.0	NR_029579	387188.0		NR_029579	ENSMUSG00000065395	Mir193a	Mir193|Mirn193|mir-193a|mmu-mir-193|mmu-mir-193a	microRNA 193a	ncRNA	0.0	0.0	2.0	2.0	14.0	0.0
Merged-chr1-87637678-4	chr1	87637169	87638169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	MLT1M|LTR|ERVL-MaLR	17357.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26472511-4	chr2	26472000	26473000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 18 of 33)	L4_C_Mam|LINE|RTE-X	-2381.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21009704-4	chr11	21009188	21010188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81636.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	3.0	8.5	0.5	0.0	21.5	3.5
Merged-chr12-76765650-4	chr12	76765148	76766148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_154884, intron 1 of 2)	CpG	110.0	NM_206534	211151.0	Mm.80970	NM_206534	ENSMUSG00000090258	Churc1	1700030P15Rik|My015|chch	churchill domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19426312-2	chr7	19425812	19426812	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172279, exon 17 of 17)	exon (NM_172279, exon 17 of 17)	-4895.0	NR_073015	100503495.0	Mm.410762	NR_073014	ENSMUSG00000040705	A930016O22Rik	-	RIKEN cDNA A930016O22 gene	ncRNA	2.0	2.5	0.0	0.0	0.0	0.0
Merged-chr14-75863936-4	chr14	75863418	75864418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15995.0	NR_028481	100303751.0	Mm.484707	NR_028481	ENSMUSG00000065147	Snora31	MBI-161	small nucleolar RNA, H/ACA box 31	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131530735-4	chr2	131530243	131531243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	31542.0	NM_013460	11550.0	Mm.389380	NM_013460	ENSMUSG00000027335	Adra1d	Adra-1|Adra1|Adra1a|Gpcr8|Spr8|[a]1d|alpha1D-AR	adrenergic receptor, alpha 1d	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-33935783-5	chr13	33935309	33936309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040707)	promoter-TSS (NR_040707)	-223.0	NR_040707	68808.0	Mm.443347	NR_040707	ENSMUSG00000085457	1110046J04Rik	-	RIKEN cDNA 1110046J04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180387678-4	chr1	180387208	180388208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-57159.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46483129-4	chr19	46482641	46483641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 10 of 11)	intron (NM_001025391, intron 10 of 11)	-18507.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19186449-4	chr10	19185945	19186945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038022, intron 1 of 1)	intron (NR_038022, intron 1 of 1)	19207.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8637143-4	chr12	8636634	8637634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37000.0	NM_001160221	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113600141-4	chr13	113599624	113600624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	18440.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30582731-4	chr13	30582222	30583222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32321.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-33202339-4	chr14	33201851	33202851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14472.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118132798-4	chr14	118132288	118133288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029578)	promoter-TSS (NM_029578)	-23.0	NM_029578	76355.0	Mm.251537	NM_029578	ENSMUSG00000022130	Tgds	2610017J16Rik|2610025M23Rik|AI648925	TDP-glucose 4,6-dehydratase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11496886-4	chr2	11496378	11497378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	MTEb|LTR|ERVL-MaLR	5212.0	NM_001177754	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-7121039-4	chr7	7120530	7121530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172738, intron 1 of 4)	intron (NM_172738, intron 1 of 4)	446.0	NM_172738	232853.0	Mm.23838	NM_172738	ENSMUSG00000062116	Zfp954	5730403M16Rik|8030437F07|AA123315	zinc finger protein 954	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50291612-4	chr11	50291088	50292088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 1 of 4)	intron (NM_175334, intron 1 of 4)	748.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37435894-4	chr19	37435410	37436410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008245, intron 1 of 3)	intron (NM_008245, intron 1 of 3)	1069.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	8.0	39.5	26.0	24.5	45.5	24.0
Merged-chr9-65536276-4	chr9	65535772	65536772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43815.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-149188775-4	chr6	149188267	149189267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113424)	promoter-TSS (NM_001113424)	-55.0	NM_001113424	232566.0	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23822724-2	chr11	23822224	23823224	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51754.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6418686-4	chr19	6418202	6419202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205235)	promoter-TSS (NM_001205235)	-36.0	NM_001205235	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166305167-4	chr2	166304677	166305677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31269.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	6.0	39.0	21.5	3.0	6.0	18.0
Merged-chr17-88042624-4	chr17	88042116	88043116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081034, intron 1 of 22)	intron (NM_001081034, intron 1 of 22)	22316.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	12.5	37.5	32.5	22.5	29.5	31.0
Merged-chr17-24885477-1	chr17	24884977	24885977	+	1000.0	f1_balb.idr	exon (NM_001355396, exon 3 of 7)	exon (NM_001355396, exon 3 of 7)	873.0	NM_001355396	26426.0	Mm.36718	NM_011956	ENSMUSG00000039183	Nubp2	D17Wsu11e	nucleotide binding protein 2	protein-coding	0.0	2.0	6.0	6.5	9.5	1.5
Merged-chr19-3854390-1	chr19	3853890	3854890	+	1000.0	f1_c57bl6.idr	intron (NM_001271496, intron 1 of 11)	intron (NM_001271496, intron 1 of 11)	2617.0	NR_073190	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96466162-4	chr10	96465678	96466678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-150823.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117962301-4	chr11	117961802	117962802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7064.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-141079973-2	chr5	141079473	141080473	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-79377.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79257232-2	chr11	79256732	79257732	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2537.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129337510-2	chr4	129337010	129338010	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025970, intron 1 of 6)	MER67B|LTR|ERV1	1484.0	NM_025970	67106.0	Mm.36575	NM_025970	ENSMUSG00000057572	Zbtb8os	2010001H09Rik|2310028N13Rik|AI851226|Arch|Archm	zinc finger and BTB domain containing 8 opposite strand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-63026785-4	chr11	63026268	63027268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22634.0	NR_126547	74884.0	Mm.363520	NR_126547	ENSMUSG00000087604	Cdrt4os1	4930452L02Rik	CMT1A duplicated region transcript 4, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132883823-4	chr4	132883361	132884361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133887, intron 1 of 8)	intron (NM_133887, intron 1 of 8)	597.0	NM_133887	100226.0	Mm.28237	NM_133887	ENSMUSG00000028879	Stx12	AI850350|AU041521|Stx13	syntaxin 12	protein-coding	66.5	221.5	170.0	82.0	244.0	198.5
Merged-chr9-103305155-4	chr9	103304664	103305664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176979)	promoter-TSS (NM_176979)	-163.0	NM_176979	235559.0	Mm.259893	NM_176979	ENSMUSG00000032555	Topbp1	1110031N14Rik|2810429C13Rik|AI256758|D430026L04Rik|mKIAA0259	topoisomerase (DNA) II binding protein 1	protein-coding	7.0	12.5	13.5	5.0	15.0	6.0
Merged-chr19-33589762-4	chr19	33589272	33590272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013770, intron 1 of 10)	intron (NM_001013770, intron 1 of 10)	539.0	NM_001013770	381236.0	Mm.491242	NM_001013770	ENSMUSG00000024766	Lipo3	AI747699|Lipo1	lipase, member O3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-110798377-4	chr13	110797864	110798864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105135.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	9.5	14.0	7.0	0.5	1.5	6.0
Merged-chr16-4886142-4	chr16	4885689	4886689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357061)	promoter-TSS (NM_001357061)	89.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64747844-5	chr17	64747365	64748365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 20 of 21)	Lx7|LINE|L1	-19246.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121851145-4	chr8	121850626	121851626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21557.0	NM_145605	234825.0	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	1.5	7.0	0.0	0.0	9.0	7.0
Merged-chr5-123749971-2	chr5	123749471	123750471	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025438)	promoter-TSS (NM_025438)	245.0	NM_001042421	208628.0	Mm.441089	NM_001042421	ENSMUSG00000029414	Kntc1	D330012D13|jgl	kinetochore associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-19345832-2	chr2	19345332	19346332	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_126563, intron 1 of 3)	intron (NR_126563, intron 1 of 3)	1515.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81571789-3	chr7	81571271	81572271	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001004185, exon 1 of 10)	exon (NM_001004185, exon 1 of 10)	479.0	NM_001004185	434204.0	Mm.181641	NM_001004185	ENSMUSG00000045795	Whamm	BB081391|Whdc1|mKIAA1971	WAS protein homolog associated with actin, golgi membranes and microtubules	protein-coding	73.5	176.0	115.5	52.5	179.0	143.0
Merged-chr3-136898928-4	chr3	136898427	136899427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 8 of 13)	intron (NM_008913, intron 8 of 13)	228861.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131357911-4	chr1	131357417	131358417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 5 of 22)	intron (NM_001081011, intron 5 of 22)	-78354.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87737420-4	chr11	87736940	87737940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009296)	promoter-TSS (NM_009296)	-111.0	NM_001355753	20922.0	Mm.622	NM_009296	ENSMUSG00000020485	Supt4a	AL022777|Supt4h|Supt4h1|Supt4h1a	suppressor of Ty 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70720107-4	chr8	70719617	70720617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195253, intron 1 of 3)	intron (NM_001195253, intron 1 of 3)	1574.0	NM_001195253	100502950.0	Mm.52981	NM_001195253	ENSMUSG00000095026	Gm3336	100041434|2410018E23Rik	predicted gene 3336	protein-coding	69.5	166.0	133.5	63.5	142.0	124.0
Merged-chr10-57745631-4	chr10	57745149	57746149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39274.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71831260-4	chr6	71830753	71831753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253681)	promoter-TSS (NM_001253681)	-67.0	NM_001362134	76614.0	Mm.235123	NM_029673	ENSMUSG00000052337	Immt	1700082C19Rik|D830041H16Rik|HMP|P87|P87/89|P89	inner membrane protein, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-89563641-4	chr1	89563139	89564139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	108828.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20830252-2	chr14	20829758	20830758	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-6404.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128200722-4	chr6	128200217	128201217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-16914.0	NR_077223	330427.0	Mm.426356	NR_077223	ENSMUSG00000107879	9330102E08Rik	-	RIKEN cDNA 9330102E08 gene	ncRNA	1.5	0.0	4.5	23.5	39.0	30.5
Merged-chr15-5347941-4	chr15	5347447	5348447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103760.0	NM_008965	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62329527-4	chr4	62329030	62330030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355385, intron 12 of 27)	intron (NM_001355385, intron 12 of 27)	31066.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67781053-4	chr15	67780537	67781537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	477819.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	39.5	79.5	66.0	20.0	42.0	27.5
Merged-chr5-21386572-4	chr5	21386084	21387084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	L1MB3|LINE|L1	13911.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30286400-4	chr2	30285893	30286893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177648)	promoter-TSS (NM_177648)	-39.0	NM_177648	227697.0	Mm.26690	NM_177648	ENSMUSG00000075419	Dolk	BC026973|Tmem15|mKIAA1094	dolichol kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47220056-4	chr17	47219490	47220490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 3 of 19)	LTR33|LTR|ERVL	-10240.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45410338-4	chr4	45409799	45410799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1533.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	40.0	95.5	84.0	35.0	71.0	62.5
Merged-chr16-10476102-4	chr16	10475575	10476575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3997.0	NM_001302619	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99370544-4	chr15	99370039	99371039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011711)	promoter-TSS (NM_011711)	-57.0	NM_001310622	22379.0	Mm.29043	NM_011711	ENSMUSG00000023008	Fmnl3	2700073B04Rik|FBP11|Wbp3|mKIAA2014	formin-like 3	protein-coding	0.0	1.0	1.0	0.0	0.0	0.0
Merged-chr13-98955384-4	chr13	98954868	98955868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER45R|DNA|hAT-Tip100	-28984.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	27.5	45.0	44.0	15.0	55.5	27.5
Merged-chr2-124752010-4	chr2	124751495	124752495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98414.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115714791-2	chr11	115714291	115715291	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6194.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.0	0.0	0.0	3.5	0.0	0.0
Merged-chr11-102316825-4	chr11	102316324	102317324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011551, intron 1 of 20)	CpG	463.0	NM_001044383	21429.0	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	41.0	80.5	44.0	35.5	63.0	43.5
Merged-chr11-69411317-4	chr11	69410824	69411824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017426, intron 1 of 22)	CpG	2351.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.0	10.5	1.5	1.5	7.5	5.0
Merged-chr2-19655077-2	chr2	19654577	19655577	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_033642)	TTS (NR_033642)	2820.0	NR_033642	100041244.0	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110802160-2	chr7	110801660	110802660	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009667, intron 7 of 14)	intron (NM_009667, intron 7 of 14)	29556.0	NM_009667	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4877843-2	chr19	4877342	4878342	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013456)	promoter-TSS (NM_013456)	67.0	NM_013456	11474.0	Mm.5316	NM_013456	ENSMUSG00000006457	Actn3	-	actinin alpha 3	protein-coding	3.5	0.0	3.5	7.0	9.0	0.0
Merged-chr14-19729309-2	chr14	19728809	19729809	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-21948.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132945617-6	chr4	132945090	132946090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23039.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	125.0	278.5	246.5	123.0	347.5	226.0
Merged-chr15-74930520-4	chr15	74930015	74931015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24536.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	39.5	179.5	109.5	25.0	59.0	36.0
Merged-chr17-31075643-4	chr17	31075138	31076138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	17944.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	282.0	620.5	460.5	208.0	647.5	385.0
Merged-chr2-59401195-4	chr2	59400674	59401674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14492.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95501933-4	chr10	95501393	95502393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359477)	promoter-TSS (NM_001359477)	56.0	NM_001359476	67270.0	Mm.30008	NM_026065	ENSMUSG00000062981	Mrpl42	2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|L42mt|MRP-L31|MRP-L42|MRP-S32|PTD007|Rpml31|S32mt	mitochondrial ribosomal protein L42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31727628-4	chr5	31727105	31728105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181281, intron 2 of 10)	intron (NM_181281, intron 2 of 10)	29555.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61383604-5	chr10	61383102	61384102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013753)	promoter-TSS (NM_013753)	-79.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33755839-4	chr2	33755361	33756361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 7 of 9)	intron (NM_175184, intron 7 of 9)	-49955.0	NR_045729	320482.0	Mm.442057	NR_045729	ENSMUSG00000086484	Nron	A630071L07Rik|Gm24353	non-protein coding RNA, repressor of NFAT	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152396525-4	chr3	152396014	152397014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287139)	promoter-TSS (NM_001287139)	-170.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	72.5	185.5	181.5	88.0	215.0	137.0
Merged-chr15-90109613-4	chr15	90109124	90110124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114687.0	NM_001033441	380959.0	Mm.17853	NM_001033441	ENSMUSG00000075470	Alg10b	AA469671|AU045404|AW123895|C85569|Deaf1|Gm917|nse5	asparagine-linked glycosylation 10B (alpha-1,2-glucosyltransferase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51195470-4	chr3	51194968	51195968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28979.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-26580262-3	chr14	26579761	26580761	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145969, intron 1 of 17)	intron (NM_145969, intron 1 of 17)	711.0	NM_145969	211922.0	Mm.260512	NM_145969	ENSMUSG00000040818	Dennd6a	Fam116a	DENN/MADD domain containing 6A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-39431746-4	chr16	39431254	39432254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-242804.0	NR_153800	102640746.0		NR_153800		Gm36742	-	predicted gene, 36742	ncRNA	39.0	60.0	59.5	28.5	57.0	46.5
Merged-chr1-9806093-4	chr1	9805597	9806597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177547, intron 1 of 16)	intron (NM_177547, intron 1 of 16)	7967.0	NM_177547	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-10486008-4	chr15	10485527	10486527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026396)	promoter-TSS (NM_026396)	9.0	NM_011232	19355.0	Mm.38376	NM_011232	ENSMUSG00000022248	Rad1	mRAD1	RAD1 checkpoint DNA exonuclease	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95052300-4	chr4	95051815	95052815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010591)	promoter-TSS (NM_010591)	-93.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	181.0	374.5	330.0	179.5	376.5	334.0
Merged-chr4-24496369-4	chr4	24495868	24496868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199467)	promoter-TSS (NM_199467)	-83.0	NR_149739	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	8.5	30.5	20.5	1.0	10.5	8.0
Merged-chr11-103964225-4	chr11	103963729	103964729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2496.0	NM_001304574	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38925773-2	chr2	38925273	38926273	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010264, intron 1 of 10)	CpG	688.0	NM_010264	14536.0	Mm.439703	NM_010264	ENSMUSG00000063972	Nr6a1	1700113M01Rik|Gcnf|NCNF|RTR	nuclear receptor subfamily 6, group A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45266318-4	chr9	45265815	45266815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_106054)	TTS (NR_106054)	392.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84977721-6	chr8	84977211	84978211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008416, exon 1 of 1)	exon (NM_008416, exon 1 of 1)	1037.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	118.0	184.5	199.0	84.5	175.5	198.5
Merged-chr8-120720069-4	chr8	120719566	120720566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16292.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80695373-4	chr10	80694871	80695871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	6449.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104233290-4	chr9	104232794	104233794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 6 of 56)	intron (NM_001359740, intron 6 of 56)	29636.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-107437901-2	chr8	107437401	107438401	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025830, intron 1 of 23)	B3A|SINE|B2	1503.0	NM_025830	66894.0	Mm.390058	NM_025830	ENSMUSG00000031930	Wwp2	1300010O06Rik|AA690238|AIP2|AW554328	WW domain containing E3 ubiquitin protein ligase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109777808-4	chr8	109777304	109778304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009677)	promoter-TSS (NM_009677)	-779.0	NM_009677	11765.0	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding	28.5	61.5	28.5	16.0	69.5	43.5
Merged-chr7-141191866-2	chr7	141191366	141192366	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008284, intron 4 of 5)	intron (NM_008284, intron 4 of 5)	2138.0	NM_001130444	15461.0	Mm.334313	NM_008284	ENSMUSG00000025499	Hras	H-ras|Ha-ras|Harvey-ras|Hras-1|Hras1|Kras2|c-H-ras|c-Ha-ras|c-rasHa|ras	Harvey rat sarcoma virus oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39205452-4	chr6	39204911	39205911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033430, intron 1 of 19)	intron (NM_001033430, intron 1 of 19)	1362.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4201282-2	chr19	4200782	4201782	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011237, intron 2 of 10)	intron (NM_011237, intron 2 of 10)	321.0	NM_011237	19367.0	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-3335579-4	chr9	3335076	3336076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026303, intron 1 of 11)	intron (NM_026303, intron 1 of 11)	345.0	NM_026303	67667.0	Mm.116968	NM_026303	ENSMUSG00000025899	Alkbh8	4930562C03Rik|8030431D03Rik|9430088N01Rik|Abh8	alkB homolog 8, tRNA methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-86872306-4	chr8	86871805	86872805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	12953.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	4.0	24.5	9.5	9.0	25.5	30.5
Merged-chr7-81571237-4	chr7	81570756	81571756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004185)	promoter-TSS (NM_001004185)	-36.0	NM_001004185	434204.0	Mm.181641	NM_001004185	ENSMUSG00000045795	Whamm	BB081391|Whdc1|mKIAA1971	WAS protein homolog associated with actin, golgi membranes and microtubules	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101267623-4	chr15	101267151	101268151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010444, intron 1 of 6)	intron (NM_010444, intron 1 of 6)	805.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	9.0	37.0	10.5	18.0	43.0	17.5
Merged-chr2-167381827-4	chr2	167381316	167382316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32638.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75454649-4	chr11	75454151	75455151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138950)	promoter-TSS (NM_138950)	66.0	NM_138950	192652.0	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66887015-4	chr9	66886557	66887557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	32648.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81811404-4	chr15	81810921	81811921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017376)	promoter-TSS (NM_017376)	7.0	NM_017376	21685.0	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61094751-2	chr18	61094251	61095251	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-10821.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.0	2.5	1.0	0.0	2.5	3.5
Merged-chr17-29394305-4	chr17	29393785	29394785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33371.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	89.5	201.0	121.0	53.5	180.0	91.5
Merged-chr19-60889264-3	chr19	60888749	60889749	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018869)	promoter-TSS (NM_018869)	-500.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	15.5	43.5	40.5	40.5	66.0	69.0
Merged-chr18-82902738-4	chr18	82902256	82903256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8123.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-54732417-2	chr9	54731917	54732917	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025376, intron 1 of 10)	Tigger17a|DNA|TcMar-Tigger	2132.0	NM_023191	66317.0	Mm.28437	NM_023191	ENSMUSG00000061559	Wdr61	2700038L12Rik|2810418I05Rik|REC14	WD repeat domain 61	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-118152202-4	chr4	118151688	118152688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161823, intron 12 of 21)	intron (NM_001161823, intron 12 of 21)	-17242.0	NM_001161774	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49965799-4	chr16	49965319	49966319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9989.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117312553-2	chr11	117312053	117313053	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-19162.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83010728-2	chr15	83010228	83011228	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028728, intron 3 of 5)	intron (NM_028728, intron 3 of 5)	12410.0	NM_028728	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133669628-2	chr4	133669132	133670132	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356466, intron 2 of 3)	intron (NM_001356466, intron 2 of 3)	3015.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	7.5	0.0	0.0	1.5	2.0	8.0
Merged-chr5-151057189-4	chr5	151056686	151057686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153382, intron 7 of 13)	intron (NR_153382, intron 7 of 13)	104579.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95822196-4	chr15	95821674	95822674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	7898.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-48108825-4	chr4	48108320	48109320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16099.0	NM_026343	67727.0	Mm.171334	NM_026343	ENSMUSG00000061455	Stx17	4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351	syntaxin 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-116047672-4	chr12	116047172	116048172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004066)	promoter-TSS (NM_001004066)	-52.0	NM_001004066	56220.0	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding	6.5	19.0	32.5	9.0	65.0	35.5
Merged-chr7-30588365-2	chr7	30587857	30588857	+	1000.0	f0_balb.idr|f0_c57.idr	exon (NM_001290573, exon 1 of 37)	exon (NM_001290573, exon 1 of 37)	369.0	NM_001290573	75410.0	Mm.168688	NM_029274	ENSMUSG00000006307	Kmt2b	2610014H22Rik|Mll2|Wbp7|mKIAA0304	lysine (K)-specific methyltransferase 2B	protein-coding	5.0	12.5	20.0	6.5	12.0	18.5
Merged-chr2-12314189-4	chr2	12313691	12314691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12247.0	NM_001001309	241226.0	Mm.329997	NM_001001309	ENSMUSG00000026768	Itga8	AI447669	integrin alpha 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91385754-4	chr16	91385266	91386266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 3 of 7)	intron (NM_001347258, intron 3 of 7)	12983.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38460299-4	chr16	38459780	38460780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359898, intron 1 of 5)	intron (NM_001359898, intron 1 of 5)	1347.0	NM_009855	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-66848946-4	chr10	66848455	66849455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71429.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16239877-4	chr7	16239360	16240360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176912, intron 1 of 1)	intron (NM_176912, intron 1 of 1)	2471.0	NM_001146005	319430.0	Mm.239570	NM_176912	ENSMUSG00000074361	C5ar2	C5L2|E030029A11Rik|Gpr77	complement component 5a receptor 2	protein-coding	24.5	51.5	40.0	36.5	61.0	44.0
Merged-chr7-90457225-4	chr7	90456705	90457705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025460)	promoter-TSS (NM_025460)	3.0	NM_025460	66271.0	Mm.28963	NM_025460	ENSMUSG00000030615	Tmem126a	1810020E01Rik	transmembrane protein 126A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149843093-4	chr4	149842608	149843608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	-68841.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	14.5	18.0	10.0	4.5	5.5	9.0
Merged-chr13-113869438-4	chr13	113868927	113869927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	74919.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158175646-4	chr2	158175139	158176139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16369.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8709747-4	chr11	8709235	8710235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD1|LINE|L1	-45200.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119267934-4	chr11	119267444	119268444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159324)	promoter-TSS (NM_001159324)	-19.0	NM_001159324	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	152.5	316.5	267.0	169.5	354.5	301.0
Merged-chr11-69059219-1	chr11	69058719	69059719	+	1000.0	f0_c57.idr	promoter-TSS (NM_028005)	promoter-TSS (NM_028005)	-556.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4069916-2	chr19	4069416	4070416	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10469.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150566384-4	chr4	150565895	150566895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	85779.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-145692269-4	chr3	145691745	145692745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42260.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37586314-4	chr1	37585835	37586835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45319.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113077308-4	chr6	113076796	113077796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027008)	promoter-TSS (NR_027008)	-52.0	NR_027008	14910.0	Mm.280950	NR_027008	ENSMUSG00000086429	Gt(ROSA)26Sor	AV258896|Gtrgeo26|Gtrosa26|R26|ROSA26|Thumpd3as1	gene trap ROSA 26, Philippe Soriano	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49203411-4	chr11	49202901	49203901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009562)	promoter-TSS (NM_009562)	-99.0	NM_001024846	22720.0	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135582574-4	chr5	135582080	135583080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-9531.0	NM_001356630	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-83080939-4	chr3	83080441	83081441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	25403.0	NM_016784	53317.0	Mm.286349	NM_016784	ENSMUSG00000027998	Plrg1	AA958940|C80566|Tango4	pleiotropic regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153633417-1	chr2	153632917	153633917	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_001195390)	promoter-TSS (NM_001195390)	-636.0	NM_133850	99311.0	Mm.294478	NM_133850	ENSMUSG00000056941	Commd7	2310010I22Rik|AW060956|mU3	COMM domain containing 7	protein-coding	0.0	3.5	4.0	2.5	11.5	11.0
Merged-chr9-66919769-4	chr9	66919293	66920293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173413)	promoter-TSS (NM_173413)	-88.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3198742-7	chr11	3198361	3199361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-3492.0	NM_001166548	74203.0	Mm.255649	NM_023743	ENSMUSG00000020454	Eif4enif1	2610509L04Rik|A930019J01Rik|AA410001|AU021239|Clast4|D11Ertd166e	eukaryotic translation initiation factor 4E nuclear import factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100396867-4	chr12	100396370	100397370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 9 of 19)	L1MB7|LINE|L1	120261.0	NR_045741	100038713.0	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91547556-4	chr16	91547054	91548054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008338, intron 1 of 6)	intron (NM_008338, intron 1 of 6)	460.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	52.0	110.5	58.0	44.0	96.0	57.0
Merged-chr16-91073696-4	chr16	91073194	91074194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4549.0	NM_028905	74387.0	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	7.5	2.0	1.5	0.5	1.0	0.0
Merged-chr10-68105416-4	chr10	68104902	68105902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 8 of 9)	(T)n|Simple_repeat|Simple_repeat	125832.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	54.5	136.0	126.5	55.0	151.5	128.5
Merged-chr2-158179158-4	chr2	158178666	158179666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12842.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108591303-4	chr3	108590784	108591784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358055)	promoter-TSS (NM_001358055)	6.0	NM_001358054	99512.0	Mm.285968	NM_181400	ENSMUSG00000040389	Wdr47	1810073M12Rik|AA552998|mKIAA0893	WD repeat domain 47	protein-coding	4.0	18.5	11.0	7.0	6.0	16.0
Merged-chr13-37453340-4	chr13	37452836	37453836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	107991.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	1.0	2.0	3.0	3.5	6.5	8.5
Merged-chr5-53402953-4	chr5	53402424	53403424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	135818.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136134602-2	chr1	136134102	136135102	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	3212.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101009468-4	chr11	101008988	101009988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243051)	promoter-TSS (NM_001243051)	36.0	NM_001243051	11975.0	Mm.340818	NM_016920	ENSMUSG00000019302	Atp6v0a1	AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1	ATPase, H+ transporting, lysosomal V0 subunit A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-103924286-4	chr13	103923778	103924778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3692.0	NM_001005868	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4501014-4	chr7	4500516	4501516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029834, intron 1 of 21)	intron (NM_029834, intron 1 of 21)	664.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	23.5	17.5	20.0	12.5	35.0	19.0
Merged-chr13-107903783-4	chr13	107903293	107904293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13729.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	59.0	179.5	79.0	59.5	179.0	93.5
Merged-chr11-54902865-4	chr11	54902364	54903364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001329860)	promoter-TSS (NM_001329860)	10.0	NM_008161	14778.0	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24762011-4	chr13	24761511	24762511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020567)	promoter-TSS (NM_020567)	-74.0	NM_020567	57441.0	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101997523-4	chr5	101997037	101998037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	72384.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	26.0	36.0	35.5	10.0	44.0	62.0
Merged-chr16-30388840-4	chr16	30388350	30389350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001128094)	promoter-TSS (NM_001128094)	-320.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	59.0	107.5	102.0	70.5	128.5	102.5
Merged-chr11-103383749-4	chr11	103383244	103384244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 5 of 11)	L2a|LINE|L2	-20052.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163587675-4	chr2	163587172	163588172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14642.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85774904-4	chr11	85774421	85775421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046194, intron 1 of 2)	intron (NR_046194, intron 1 of 2)	759.0	NR_046194	78420.0	Mm.488197	NR_046194	ENSMUSG00000085514	Bcas3os2	9530048J24Rik	breast carcinoma amplified sequence 3 opposite strand 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-83859254-4	chr3	83858756	83859756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17648.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133599910-4	chr4	133599454	133600454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_018754)	TTS (NM_018754)	2214.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	17.5	30.0	11.5	35.5	23.0	16.5
Merged-chr1-54920294-4	chr1	54919791	54920791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	6096.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75585884-2	chr11	75585384	75586384	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2195.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	3.0	10.0	0.0	0.5	3.5	4.0
Merged-chr2-35463597-4	chr2	35463089	35464089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21B|LTR|ERV1	-2140.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86525843-4	chr6	86525313	86526313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011865, exon 1 of 1)	exon (NM_011865, exon 1 of 1)	376.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	9.5	38.5	37.0	9.0	37.0	37.5
Merged-chr5-4530892-4	chr5	4530410	4531410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	227306.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123366884-4	chr9	123366391	123367391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348167)	promoter-TSS (NM_001348167)	-36.0	NM_001348167	102436.0	Mm.276076	NM_153168	ENSMUSG00000035202	Lars2	AI035546|Kiaa0028|LEURS	leucyl-tRNA synthetase, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45238111-4	chr7	45237619	45238619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007645, intron 2 of 7)	intron (NM_007645, intron 2 of 7)	720.0	NM_007645	12493.0	Mm.3689	NM_007645	ENSMUSG00000030798	Cd37	Tspan26	CD37 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58959278-4	chr11	58958778	58959778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2433.0	NM_001318003	382523.0		NM_001318003		Gm12260	H3t	predicted gene 12260	protein-coding	33.0	113.0	81.5	15.5	41.5	34.5
Merged-chr16-13717088-4	chr16	13716626	13717626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011987, intron 3 of 3)	MTC|LTR|ERVL-MaLR	-12710.0	NR_040574	76684.0	Mm.491043	NR_040574	ENSMUSG00000086550	Pla2g10os	1810007I06Rik	phospholipase A2, group X, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-127126048-4	chr4	127125549	127126549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001099319)	promoter-TSS (NM_001099319)	6.0	NM_001099319	100039968.0	Mm.392655	NM_001099319	ENSMUSG00000070737	Tmem35b	Gm12942|Zmym6nb	transmembrane protein 35B	protein-coding	7.0	13.0	21.0	14.5	12.5	19.0
Merged-chr3-65528353-4	chr3	65527864	65528864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178892)	promoter-TSS (NM_178892)	-83.0	NM_178892	99929.0	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding	24.0	65.5	44.5	12.0	47.0	36.0
Merged-chr19-29355719-4	chr19	29355181	29356181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026362, intron 3 of 5)	intron (NM_026362, intron 3 of 5)	6190.0	NM_026362	67759.0	Mm.275511	NM_026362	ENSMUSG00000016495	Plgrkt	1110007H22Rik|5033414D02Rik|AI852040|Plg-R(KT)|Plg-RKT	plasminogen receptor, C-terminal lysine transmembrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86703786-4	chr1	86703274	86704274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153530)	promoter-TSS (NM_153530)	-30.0	NM_153530	208718.0	Mm.389152	NM_153530	ENSMUSG00000053333	Dis3l2	4930429A22Rik|8030493P09Rik	DIS3 like 3'-5' exoribonuclease 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76451288-2	chr15	76450788	76451788	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175457, intron 38 of 43)	intron (NM_175457, intron 38 of 43)	-6150.0	NM_198885	20289.0	Mm.322821	NM_198885	ENSMUSG00000034161	Scx	BB114693|Bhlha41|Scl	scleraxis	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51845685-4	chr13	51845178	51846178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011817)	promoter-TSS (NM_011817)	-997.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81359052-4	chr10	81358573	81359573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028657, intron 1 of 9)	intron (NM_028657, intron 1 of 9)	1582.0	NM_028657	73822.0	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1|gr	major facilitator superfamily domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154925895-4	chr4	154925355	154926355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178931, intron 3 of 7)	intron (NM_178931, intron 3 of 7)	2222.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	0.0	0.0	2.0	0.0	13.0	3.0
Merged-chr17-35051892-4	chr17	35051405	35052405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033444, intron 1 of 5)	intron (NM_033444, intron 1 of 5)	1662.0	NM_033444	114584.0	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	34.0	66.0	41.0	27.0	35.5	31.5
Merged-chr10-80157654-2	chr10	80157154	80158154	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021565, exon 9 of 9)	3' UTR (NM_021565, exon 9 of 9)	7972.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40148554-4	chr4	40148074	40149074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007386, intron 1 of 20)	intron (NM_007386, intron 1 of 20)	5309.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29125074-4	chr2	29124593	29125593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_198033, exon 1 of 26)	5' UTR (NM_198033, exon 1 of 26)	101.0	NM_198033	269254.0	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-45719281-4	chr5	45718783	45719783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_027993)	TTS (NR_027993)	8295.0	NR_027993	100041576.0	Mm.451765	NR_027993	ENSMUSG00000015882	Gm3414	-	predicted gene 3414	ncRNA	1.0	5.0	5.0	4.0	0.0	1.5
Merged-chr15-76313443-4	chr15	76312936	76313936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-6191.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115301075-4	chr5	115300591	115301591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019682)	promoter-TSS (NM_019682)	-29.0	NR_131932	102639268.0	Mm.319998	NR_131932		Gm13830	-	predicted gene 13830	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-13127265-3	chr4	13126761	13127761	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	220424.0	NM_001171801	208820.0	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	0.0	4.0	0.0	0.0	0.0	3.0
Merged-chr6-128839050-4	chr6	128838598	128839598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-12783.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	29.5	139.0	73.5	37.5	155.0	92.0
Merged-chr18-34954392-4	chr18	34953912	34954912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010481)	promoter-TSS (NM_010481)	-61.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-5234649-2	chr16	5234149	5235149	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145362, intron 1 of 12)	intron (NM_145362, intron 1 of 12)	1028.0	NM_145362	208211.0	Mm.34581	NM_145362	ENSMUSG00000039427	Alg1	HMAT1|HMT1	asparagine-linked glycosylation 1 (beta-1,4-mannosyltransferase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84275496-4	chr12	84274994	84275994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-9802.0	NM_029880	77219.0	Mm.246127	NM_029880	ENSMUSG00000072946	Ptgr2	1810016I24Rik|9130222H03Rik|9630002F03Rik|AI838763|B830026H24Rik|PGR-2|PRG-2|Zadh1	prostaglandin reductase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13869749-4	chr10	13869258	13870258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347362)	promoter-TSS (NM_001347362)	-801.0	NM_001347362	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	8.5	37.5	19.5	25.5	44.0	23.5
Merged-chr16-55664098-4	chr16	55663596	55664596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	158042.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46160928-4	chr17	46160413	46161413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019581)	promoter-TSS (NM_019581)	-119.0	NM_019581	56055.0	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144213968-4	chr2	144213463	144214463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-24673.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75494931-4	chr18	75494457	75495457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 9 of 11)	intron (NM_201354, intron 9 of 11)	-19688.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	39.5	43.0	36.0	53.0	54.0	44.0
Merged-chr11-22972400-2	chr11	22971900	22972900	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011663, exon 1 of 1)	5' UTR (NM_011663, exon 1 of 1)	395.0	NM_011663	22183.0	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	47.5	108.5	98.5	0.0	7.0	3.0
Merged-chr17-84981846-4	chr17	84981358	84982358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159498, intron 2 of 7)	intron (NM_001159498, intron 2 of 7)	16833.0	NM_001159498	19043.0	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-3102542-4	chr17	3102052	3103052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12420.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	0.0	9.0	3.0	0.5	4.5	0.0
Merged-chr11-75531612-4	chr11	75531119	75532119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173388)	promoter-TSS (NM_173388)	-75.0	NM_001199284	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132804643-4	chr4	132804144	132805144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8280.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124478164-4	chr6	124477677	124478677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13393.0	NM_153508	232370.0	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60822367-3	chr2	60821863	60822863	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	59075.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98270547-4	chr12	98270047	98271047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008152, intron 1 of 1)	L1MEd|LINE|L1	1912.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111536519-4	chr8	111536026	111537026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168621)	promoter-TSS (NM_001168621)	-114.0	NM_001168622	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	0.5	23.0	16.5	5.0	14.0	14.5
Merged-chr1-53848301-4	chr1	53847789	53848789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 21 of 28)	LTR31|LTR|ERV1	-1135.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	25.5	39.5	34.0	25.5	40.0	31.0
Merged-chr17-27074465-4	chr17	27073967	27074967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080553, intron 2 of 57)	intron (NM_080553, intron 2 of 57)	-16778.0	NR_106142	102465779.0		NR_106142	ENSMUSG00000098826	Mir7677	Gm27400|mmu-mir-7677	microRNA 7677	ncRNA	1.5	0.5	9.0	16.0	8.0	14.5
Merged-chr17-39843428-5	chr17	39842856	39843856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_046233, exon 1 of 1)	non-coding (NR_046233, exon 1 of 1)	359.0	NR_046233	100861531.0		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117871775-2	chr11	117871275	117872275	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027919, intron 1 of 6)	intron (NM_027919, intron 1 of 6)	1751.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34867819-4	chr6	34867346	34868346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197986, intron 1 of 1)	intron (NM_197986, intron 1 of 1)	4700.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-7955755-4	chr5	7955239	7956239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4733.0	NM_054098	117167.0	Mm.31403	NM_054098	ENSMUSG00000012428	Steap4	1110021O17Rik|AI481214|Tiarp|Tnfaip9	STEAP family member 4	protein-coding	0.0	1.0	10.0	0.0	8.0	7.0
Merged-chr18-39650553-4	chr18	39650067	39651067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122930.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85988510-4	chr1	85988005	85989005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27450.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-172420630-4	chr2	172420159	172421159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080820, intron 2 of 6)	intron (NM_001080820, intron 2 of 6)	-19919.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-26210586-2	chr11	26210086	26211086	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027973)	promoter-TSS (NR_027973)	-10.0	NR_027973	70626.0	Mm.379180	NM_027486		5730522E02Rik	-	RIKEN cDNA 5730522E02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-145231767-4	chr5	145231270	145232270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083958)	promoter-TSS (NM_001083958)	11.0	NM_028298	72611.0	Mm.206555	NM_028298	ENSMUSG00000007812	Zfp655	2700038I16Rik|9030409O18Rik|mKIAA4222	zinc finger protein 655	protein-coding	87.5	134.5	174.0	86.5	137.5	132.5
Merged-chr14-54405441-4	chr14	54404938	54405938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	L1M2|LINE|L1	4034.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	15.5	11.5	19.5	26.0	37.5	35.5
Merged-chr15-102326147-4	chr15	102325627	102326627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027044)	promoter-TSS (NM_027044)	11.0	NM_027044	56612.0	Mm.158264	NM_020031	ENSMUSG00000001289	Pfdn5	1190001O17Rik|1700010A06Rik|D15Ertd697e|Eig1|MM-1	prefoldin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107264050-4	chr9	107263541	107264541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316691, intron 1 of 7)	intron (NM_001316691, intron 1 of 7)	25355.0	NM_001316691	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	0.0	2.5	1.0	0.0	4.5	2.0
Merged-chr13-112735243-4	chr13	112734734	112735734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178746, exon 15 of 15)	3' UTR (NM_178746, exon 15 of 15)	-65543.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0.0	0.0	1.5	23.5	97.0	41.0
Merged-chr11-115675781-4	chr11	115675294	115676294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	23740.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-41395499-3	chr8	41395009	41396009	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-20812.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	6.5	1.0	2.0	5.0	23.5	14.0
Merged-chr2-31239379-4	chr2	31238916	31239916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CGTG)n|Simple_repeat|Simple_repeat	-6507.0	NM_019681	14299.0	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11003834-2	chr16	11003334	11004334	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-5064.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0.5	2.5	5.5	0.0	7.5	2.0
Merged-chr3-144135244-2	chr3	144134744	144135744	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21A|LTR|ERV1	67088.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128211848-4	chr10	128211334	128212334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025716)	promoter-TSS (NM_025716)	-40.0	NM_025716	66701.0	Mm.29694	NM_025716	ENSMUSG00000051346	Spryd4	4633402N23Rik|AA114801	SPRY domain containing 4	protein-coding	23.5	70.0	69.5	25.0	60.0	47.0
Merged-chr16-27388998-4	chr16	27388525	27389525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026202)	promoter-TSS (NM_026202)	69.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118260015-4	chr2	118259526	118260526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-3060.0	NM_027759	71313.0	Mm.85046	NM_027759	ENSMUSG00000027344	Fsip1	1700012M13Rik|4933432K11Rik	fibrous sheath-interacting protein 1	protein-coding	3.0	10.0	6.0	0.0	1.0	0.5
Merged-chr4-130922139-4	chr4	130921605	130922605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	8771.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134021013-4	chr6	134020501	134021501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14699.0	NM_001303102	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.0	1.0	3.5	2.5	9.5	15.0
Merged-chr13-5592056-4	chr13	5591564	5592564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	266028.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126595040-4	chr7	126594574	126595574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145636)	promoter-TSS (NM_145636)	-164.0	NM_145636	246779.0	Mm.222632	NM_145636	ENSMUSG00000044701	Il27	IL-27|IL-27p28|Il30|p28	interleukin 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-58978276-4	chr2	58977756	58978756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 9 of 13)	intron (NM_001362394, intron 9 of 13)	182427.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-125030003-4	chr4	125029503	125030503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145552)	promoter-TSS (NM_145552)	-11.0	NM_145552	230737.0	Mm.90760	NM_145552	ENSMUSG00000028869	Gnl2	BC003262|HUMAUANTIG|Ngp-1	guanine nucleotide binding protein-like 2 (nucleolar)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109362737-4	chr11	109362263	109363263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010303)	promoter-TSS (NM_010303)	-31.0	NM_010303	14674.0	Mm.193925	NM_010303	ENSMUSG00000020611	Gna13	AU024132|AU043124|Galpha13	guanine nucleotide binding protein, alpha 13	protein-coding	193.5	567.5	378.5	199.0	540.5	345.5
Merged-chr4-107879751-4	chr4	107879266	107880266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282737)	promoter-TSS (NM_001282737)	11.0	NM_001282737	17149.0	Mm.808	NM_001282737	ENSMUSG00000028609	Magoh	Mago-m|Mos2	mago homolog, exon junction complex core component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-36122777-6	chr8	36122264	36123264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172911, intron 3 of 5)	intron (NM_172911, intron 3 of 5)	27936.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	142.5	262.0	200.5	132.0	240.0	195.5
Merged-chr1-165675296-4	chr1	165674803	165675803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	32791.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-86139145-2	chr10	86138645	86139645	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013722, intron 6 of 13)	intron (NM_013722, intron 6 of 13)	43291.0	NR_038024	78170.0	Mm.444790	NR_038024	ENSMUSG00000112493	4930486F22Rik	-	RIKEN cDNA 4930486F22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25788347-2	chr7	25787847	25788847	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 1 of 19)	intron (NM_009465, intron 1 of 19)	386.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114691058-4	chr5	114690586	114691586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019821)	promoter-TSS (NM_019821)	-151.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	0.5	17.0	7.0	0.5	17.0	1.5
Merged-chr4-95050777-4	chr4	95050297	95051297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010591, exon 1 of 1)	exon (NM_010591, exon 1 of 1)	1425.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122102756-2	chr14	122102256	122103256	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_015586, intron 2 of 3)	ORR1F|LTR|ERVL-MaLR	4218.0	NR_015586	319727.0	Mm.215552	NR_015586		A330035P11Rik	-	RIKEN cDNA A330035P11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11014728-4	chr16	11014228	11015228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040518, exon 3 of 3)	non-coding (NR_040518, exon 3 of 3)	5830.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72350924-3	chr8	72350436	72351436	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007944, intron 22 of 23)	intron (NM_007944, intron 22 of 23)	31874.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	14.5	46.5	27.5	20.0	73.5	48.5
Merged-chr17-35994464-4	chr17	35993945	35994945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015618)	promoter-TSS (NR_015618)	-59.0	NR_015618	77810.0	Mm.483143	NR_015618		A930015D03Rik	-	RIKEN cDNA A930015D03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115412859-4	chr11	115412377	115413377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347645)	TTS (NM_001347645)	7042.0	NM_027862	71679.0	Mm.371641	NM_027862	ENSMUSG00000034566	Atp5h	0610009D10Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D	protein-coding	26.0	62.0	36.5	24.5	56.0	29.0
Merged-chr15-79346168-2	chr15	79345668	79346668	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304830)	promoter-TSS (NM_001304830)	-453.0	NM_001304830	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45202549-4	chr9	45202050	45203050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 1 of 4)	intron (NM_001198971, intron 1 of 4)	1525.0	NM_145403	214523.0	Mm.436756	NM_145403	ENSMUSG00000032091	Tmprss4	mCAP2	transmembrane protease, serine 4	protein-coding	4.0	6.0	7.0	6.5	2.0	1.0
Merged-chr8-71507802-4	chr8	71507291	71508291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_032398, exon 3 of 6)	exon (NM_032398, exon 3 of 6)	3978.0	NM_032398	84094.0	Mm.260768	NM_032398	ENSMUSG00000034845	Plvap	MECA32|Pv1	plasmalemma vesicle associated protein	protein-coding	1.0	18.0	17.0	7.5	16.0	3.5
Merged-chr17-35259436-5	chr17	35259018	35260018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3576.0	NM_010380	14964.0	Mm.439675	NM_010380	ENSMUSG00000073411	H2-D1	H-2D|H2-D	histocompatibility 2, D region locus 1	protein-coding	37.5	102.0	65.0	50.0	152.0	105.5
Merged-chr19-42001801-4	chr19	42001317	42002317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	20054.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	75.0	223.0	127.0	71.5	189.5	139.5
Merged-chr11-119954445-4	chr11	119953940	119954940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037754, intron 1 of 13)	intron (NM_001037754, intron 1 of 13)	11348.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	2.0	34.5	13.5	2.0	34.5	13.5
Merged-chr15-77627008-2	chr15	77626508	77627508	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16278.0	NM_001143686	328563.0	Mm.17957	NM_001143686	ENSMUSG00000091694	Apol11b	A330102K04Rik	apolipoprotein L 11b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-80025195-4	chr2	80024697	80025697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	13705.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145585279-3	chr4	145584810	145585810	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001324416, exon 1 of 4)	5' UTR (NM_001324416, exon 1 of 4)	110.0	NM_001324416	433801.0	Mm.276881	NM_001013808	ENSMUSG00000078502	Gm13212	-	predicted gene 13212	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21136738-4	chr5	21136247	21137247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39532.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139224944-4	chr7	139224427	139225427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001143755, intron 6 of 8)	intron (NM_001143755, intron 6 of 8)	-11620.0	NM_001162540	57740.0	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	7.0	40.5	29.0	11.5	9.0	18.0
Merged-chr10-127576516-4	chr10	127576009	127577009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008512, exon 24 of 89)	exon (NM_008512, exon 24 of 89)	-41950.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38660247-4	chr15	38659730	38660730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-1674.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-90797867-3	chr17	90797361	90798361	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346957, intron 3 of 18)	intron (NM_001346957, intron 3 of 18)	-4385.0	NR_136930	102634634.0		NR_136930		Gm20491	-	enolase 1, alpha non-neuron pseudogene	pseudo	1.0	2.5	2.5	13.0	16.5	14.0
Merged-chr18-82783105-4	chr18	82782588	82783588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24049.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-42276616-2	chr16	42276116	42277116	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008083, intron 2 of 2)	intron (NM_008083, intron 2 of 2)	26853.0	NR_105858	102466172.0		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA	2.0	0.0	0.0	0.0	10.0	0.0
Merged-chr6-91732199-2	chr6	91731699	91732699	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 5 of 14)	intron (NM_009320, intron 5 of 14)	48132.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124807797-2	chr6	124807297	124808297	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001306050)	promoter-TSS (NM_001306050)	-864.0	NM_001306051	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112976957-2	chr12	112976457	112977457	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001145900, exon 2 of 5)	exon (NM_001145900, exon 2 of 5)	394.0	NM_201646	399566.0	Mm.440140	NM_201646	ENSMUSG00000002803	Btbd6	-	BTB (POZ) domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31158272-2	chr14	31157772	31158772	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138672, intron 18 of 68)	RMER17C|LTR|ERVK	10369.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38284069-4	chr15	38283565	38284565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15835.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97766571-4	chr11	97766065	97767065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026186)	promoter-TSS (NM_026186)	48.0	NM_026186	67480.0	Mm.33206	NM_026186	ENSMUSG00000018541	Cwc25	1300013D05Rik|AA473636|Ccdc49|R75228	CWC25 spliceosome-associated protein	protein-coding	64.5	147.5	97.0	85.0	116.0	79.5
Merged-chr14-103059155-4	chr14	103058653	103059653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11063.0	NM_001033242	211286.0	Mm.295289	NM_001033242	ENSMUSG00000022125	Cln5	A730075N08Rik	ceroid-lipofuscinosis, neuronal 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4726391-4	chr16	4725886	4726886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136066)	promoter-TSS (NM_001136066)	25.0	NM_001136066	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180695401-4	chr2	180694850	180695850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291432, intron 1 of 5)	Charlie1|DNA|hAT-Charlie	-3302.0	NR_111965	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	4.5	17.0	4.5	11.0	15.5	9.5
Merged-chr14-50956188-3	chr14	50955677	50956677	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001123371)	promoter-TSS (NM_001123371)	36.0	NM_001123371	667034.0	Mm.482171	NM_001123371	ENSMUSG00000068417	Pnp2	-	purine-nucleoside phosphorylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87247070-4	chr17	87246575	87247575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18872.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	70.0	271.0	133.0	65.0	131.5	97.0
Merged-chr2-179978052-3	chr2	179977512	179978512	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033782, exon 2 of 2)	non-coding (NR_033782, exon 2 of 2)	1159.0	NR_033782	66730.0	Mm.31773	NR_033782	ENSMUSG00000085704	4921531C22Rik	-	RIKEN cDNA 4921531C22 gene	ncRNA	8.5	7.5	9.5	8.5	10.5	9.5
Merged-chr11-53763762-4	chr11	53763245	53764245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106131)	promoter-TSS (NR_106131)	-91.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167375331-4	chr2	167374835	167375835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26157.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45795292-4	chr4	45794788	45795788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3734.0	NM_028270	72535.0	Mm.331583	NM_028270	ENSMUSG00000035561	Aldh1b1	2700007F14Rik	aldehyde dehydrogenase 1 family, member B1	protein-coding	0.0	2.0	0.0	1.5	8.5	2.0
Merged-chr10-47023462-2	chr10	47022962	47023962	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER3D-int|LTR|ERVK	778713.0	NR_028276	108637.0		NR_028276	ENSMUSG00000096263	Snord14c	Gm23107|Rnu14|U14	small nucleolar RNA, C/D box 14C	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-73353630-4	chr8	73353136	73354136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010687)	promoter-TSS (NM_010687)	-96.0	NM_010687	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25220000-4	chr7	25219501	25220501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207677)	promoter-TSS (NM_207677)	-142.0	NM_207677	67379.0	Mm.280594	NM_026117	ENSMUSG00000054499	Dedd2	2410050E11Rik|FLAME-3	death effector domain-containing DNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106153148-4	chr8	106152648	106153648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357319, intron 1 of 5)	intron (NM_001357319, intron 1 of 5)	2794.0	NM_001357319	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-57930771-4	chr4	57930264	57931264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-14500.0	NM_178727	242484.0	Mm.23214	NM_178727	ENSMUSG00000052117	D630039A03Rik	-	RIKEN cDNA D630039A03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101864159-4	chr5	101863662	101864662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 50 of 66)	intron (NM_172882, intron 50 of 66)	99032.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25519917-2	chr9	25519417	25520417	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	38320.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45010201-2	chr4	45009701	45010701	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173399, intron 1 of 1)	intron (NM_173399, intron 1 of 1)	2211.0	NM_001163284	230119.0	Mm.44222	NM_173399	ENSMUSG00000049657	Zbtb5	5930421I10|9430083K24Rik|AI646847|mKIAA0354	zinc finger and BTB domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10436457-4	chr16	10435963	10436963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013778, intron 1 of 6)	intron (NM_001013778, intron 1 of 6)	10899.0	NM_001359069	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-31031945-4	chr7	31031451	31032451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001111073)	TTS (NM_001111073)	8366.0	NR_106017	102465635.0		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	15.5	73.5	38.5	34.5	73.0	29.0
Merged-chr11-115512898-4	chr11	115512393	115513393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008258, intron 1 of 4)	intron (NM_008258, intron 1 of 4)	1500.0	NM_008258	15374.0	Mm.1775	NM_008258	ENSMUSG00000020737	Jpt1	Hn1	Jupiter microtubule associated homolog 1	protein-coding	38.0	85.0	68.5	32.5	65.0	67.0
Merged-chr7-144941665-4	chr7	144941162	144942162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1737.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	100.5	304.5	159.0	107.5	251.5	132.5
Merged-chr11-120894180-3	chr11	120893680	120894680	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027745, intron 10 of 18)	RSINE1|SINE|B4	38692.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	8.5	1.0	4.0	3.5	7.0	8.5
Merged-chr6-54681643-4	chr6	54681162	54682162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289740)	promoter-TSS (NM_001289740)	38.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128392578-4	chr2	128392087	128393087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	36764.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	68.0	127.0	80.5	47.5	106.0	55.5
Merged-chr5-62766356-4	chr5	62765874	62766874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178407)	promoter-TSS (NM_178407)	-197.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91537763-4	chr2	91537258	91538258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165989, intron 1 of 43)	intron (NM_001165989, intron 1 of 43)	-8564.0	NM_029437	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	6.5	14.5	5.0	0.0	3.5	5.5
Merged-chr12-87200321-4	chr12	87199822	87200822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290288)	promoter-TSS (NM_001290288)	-93.0	NM_001033475	382620.0	Mm.374912	NM_001033475	ENSMUSG00000034111	Tmed8	6430595O10Rik|AI447224|Gm1184|Mem1	transmembrane p24 trafficking protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-98996219-4	chr8	98995795	98996795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15592.0	NR_110579	100873092.0	Mm.414599	NR_110579	ENSMUSG00000089819	Gm15679	-	predicted gene 15679	ncRNA	2.0	2.0	3.0	1.0	2.5	3.5
Merged-chr11-20112977-4	chr11	20112465	20113465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146243)	promoter-TSS (NM_146243)	-14.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	199.0	463.0	290.5	167.0	365.0	271.5
Merged-chr7-19149407-4	chr7	19148911	19149911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026111)	promoter-TSS (NM_026111)	-215.0	NM_026111	67369.0	Mm.234876	NM_026111	ENSMUSG00000030407	Qpctl	1810019P04Rik|BB101812|gQC	glutaminyl-peptide cyclotransferase-like	protein-coding	20.5	55.0	37.0	21.5	48.5	31.5
Merged-chr17-35188436-4	chr17	35187905	35188905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010734)	promoter-TSS (NM_010734)	35.0	NM_010734	16988.0	Mm.19379	NM_010734	ENSMUSG00000073412	Lst1	B144	leukocyte specific transcript 1	protein-coding	115.5	227.5	120.0	78.0	217.0	110.0
Merged-chr4-132167644-4	chr4	132167148	132168148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23162.0	NM_013622	18386.0	Mm.5243	NM_013622	ENSMUSG00000050511	Oprd1	DOR|DOR-1|Nbor|mDOR	opioid receptor, delta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-93498507-3	chr13	93498016	93499016	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021310, exon 1 of 11)	exon (NM_021310, exon 1 of 11)	1292.0	NM_021310	57748.0	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding	37.5	49.0	51.0	7.0	38.0	21.0
Merged-chr9-102625581-3	chr9	102625134	102626134	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181394)	promoter-TSS (NM_181394)	490.0	NM_001301689	28135.0	Mm.38910	NM_001081122	ENSMUSG00000032534	Cep63	4921501M07|AL450317.13gm1|AW107703|CD20R|D9Mgc41|D9Mgc48e|ET2	centrosomal protein 63	protein-coding	125.0	302.0	178.5	118.5	285.5	242.0
Merged-chr4-3681737-4	chr4	3681236	3682236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	3615.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-6753581-4	chr10	6753073	6754073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	-5020.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	5.5	9.0	3.5	3.0	0.0	6.5
Merged-chr17-56218930-4	chr17	56218433	56219433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172624)	promoter-TSS (NM_172624)	-44.0	NM_172624	224897.0	Mm.205535	NM_172624	ENSMUSG00000001229	Dpp9	6430584G11Rik|A330078I11|DPP IX|DPRP2	dipeptidylpeptidase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-89294767-4	chr4	89294290	89295290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009877)	promoter-TSS (NM_009877)	-171.0	NM_009877	12578.0	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin dependent kinase inhibitor 2A	protein-coding	5.0	6.0	1.5	0.0	9.0	13.5
Merged-chr8-72303835-4	chr8	72303358	72304358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15204.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	14.0	43.0	32.0	4.5	8.0	13.0
Merged-chr2-167751756-4	chr2	167751259	167752259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60582.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91590230-6	chr12	91589691	91590691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031391)	promoter-TSS (NM_031391)	296.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16254464-4	chr7	16253966	16254966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001173550, intron 1 of 1)	intron (NM_001173550, intron 1 of 1)	4872.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	115.5	245.5	193.0	124.5	259.0	179.0
Merged-chr17-8284544-3	chr17	8284044	8285044	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018819, intron 1 of 3)	CpG	731.0	NM_018819	55951.0	Mm.288510	NM_018819	ENSMUSG00000023861	Mpc1	0610006G08Rik|3830411I18Rik|Brp44l	mitochondrial pyruvate carrier 1	protein-coding	7.5	7.0	2.5	1.0	11.0	4.0
Merged-chr18-68889622-3	chr18	68889113	68890113	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_038051, exon 7 of 7)	non-coding (NR_038051, exon 7 of 7)	61915.0	NR_038051	78931.0	Mm.160155	NR_038051		4930546C10Rik	-	RIKEN cDNA 4930546C10 gene	ncRNA	4.5	9.0	1.0	11.5	8.0	4.5
Merged-chr17-33920400-4	chr17	33919886	33920886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009318, exon 3 of 8)	exon (NM_009318, exon 3 of 8)	908.0	NM_009318	21356.0	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	59.0	121.0	78.5	48.0	112.5	86.5
Merged-chr6-29917010-4	chr6	29916512	29917512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104576)	promoter-TSS (NR_104576)	-1.0	NM_177204	320609.0	Mm.56097	NM_177204	ENSMUSG00000039629	Strip2	D330017J20Rik|Fam40b	striatin interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121713755-4	chr11	121713198	121714198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144797, intron 2 of 3)	intron (NM_144797, intron 2 of 3)	11271.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-16879503-1	chr12	16879003	16880003	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-15475.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	63.0	86.5	56.0	75.0	142.0	96.0
Merged-chr4-133676982-2	chr4	133676482	133677482	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3816.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	6.5	1.0	2.0	7.0	4.0	0.5
Merged-chr6-129363430-4	chr6	129362932	129363932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177686, intron 5 of 5)	Lx7|LINE|L1	13188.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-44427993-4	chr15	44427493	44428493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175009)	promoter-TSS (NM_175009)	-118.0	NM_175009	223527.0	Mm.291828	NM_175009	ENSMUSG00000022338	Eny2	1810057B09Rik|6720481I12|DC6|Ey2	ENY2 transcription and export complex 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19117116-4	chr10	19116595	19117595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24654.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101984839-4	chr11	101984328	101985328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028207)	promoter-TSS (NM_028207)	-37.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	43.5	105.5	74.5	26.0	85.5	51.5
Merged-chr18-23752297-4	chr18	23751804	23752804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162942)	promoter-TSS (NM_001162942)	1.0	NR_126066	100502834.0	Mm.213614	NR_126066	ENSMUSG00000086287	Gm15972	-	predicted gene 15972	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95714091-4	chr11	95713590	95714590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1336.0	NR_045780	432396.0	Mm.426849	NR_045780	ENSMUSG00000086191	Zfp652os	1110035M17Rik	zinc finger protein 652, opposite strand	ncRNA	10.5	42.5	20.5	15.5	39.5	24.5
Merged-chr1-136018031-4	chr1	136017524	136018524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160146)	promoter-TSS (NM_001160146)	23.0	NM_025439	66241.0	Mm.41773	NM_025439	ENSMUSG00000026411	Tmem9	1500015G18Rik|AW545782	transmembrane protein 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116052876-4	chr4	116052372	116053372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028142, intron 1 of 5)	intron (NM_028142, intron 1 of 5)	1004.0	NM_028142	72181.0	Mm.282560	NM_028142	ENSMUSG00000028706	Nsun4	2310010O12Rik|2810405F18Rik|AI507900|Shtap	NOL1/NOP2/Sun domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34918625-4	chr8	34918106	34919106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 2 of 26)	intron (NM_175091, intron 2 of 26)	47084.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	10.0	31.5	29.5	7.5	66.0	30.5
Merged-chr4-155841197-4	chr4	155840724	155841724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024263, intron 3 of 9)	CpG	1544.0	NM_024263	74761.0	Mm.159028	NM_024263	ENSMUSG00000029070	Mxra8	1200013A08Rik|1700095D18Rik|AI131686|Asp3|Dicam	matrix-remodelling associated 8	protein-coding	13.5	19.5	17.0	12.0	30.5	33.5
Merged-chr14-27198953-2	chr14	27198453	27199453	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	intron (NM_001289686, intron 2 of 12)	-39057.0	NM_027871	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101362903-4	chr7	101362407	101363407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	14838.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	95.0	208.5	195.5	79.5	162.0	182.0
Merged-chr4-9116016-4	chr4	9115501	9116501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-153292.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-142018568-2	chr4	142018068	142019068	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_131014, intron 1 of 1)	intron (NR_131014, intron 1 of 1)	670.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-34046545-4	chr15	34046036	34047036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36183.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	49.0	107.0	93.5	38.5	96.0	89.5
Merged-chr6-50305129-4	chr6	50304616	50305616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027881, intron 18 of 21)	intron (NM_027881, intron 18 of 21)	-43347.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85288066-2	chr12	85287566	85288566	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172414)	promoter-TSS (NM_172414)	-525.0	NM_172414	72350.0	Mm.158810	NM_172414	ENSMUSG00000045064	Zc2hc1c	2810002I04Rik|AV046379|Fam164c	zinc finger, C2HC-type containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95728992-4	chr16	95728495	95729495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26588.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32499395-2	chr9	32498895	32499895	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	42057.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126746997-4	chr7	126746548	126747548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12578.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	38.0	93.0	85.5	37.0	147.0	92.0
Merged-chr7-90035642-2	chr7	90035142	90036142	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 1 of 5)	B3|SINE|B2	6483.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	32.5	65.5	16.0	18.5	14.0	38.5
Merged-chr11-97531908-4	chr11	97531404	97532404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_018873, exon 12 of 20)	exon (NM_018873, exon 12 of 20)	-31564.0	NM_001289118	100141474.0	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80058651-2	chr15	80058151	80059151	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19928.0	NR_028282	100302601.0		NR_028282	ENSMUSG00000077734	Snord83b	MBII-10	small nucleolar RNA, C/D box 83B	snoRNA	3.0	0.0	2.0	0.0	3.0	1.0
Merged-chr9-116139732-4	chr9	116139229	116140229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	35634.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	57.0	61.0	44.5	8.0	33.0	9.5
Merged-chr11-109651020-4	chr11	109650559	109651559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021880, exon 1 of 11)	5' UTR (NM_021880, exon 1 of 11)	138.0	NM_001313976	19084.0	Mm.30039	NM_021880	ENSMUSG00000020612	Prkar1a	1300018C22Rik|RIalpha|Tse-1|Tse1	protein kinase, cAMP dependent regulatory, type I, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96707874-2	chr15	96707374	96708374	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8146.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-42258656-4	chr13	42258164	42259164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42812.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24811961-2	chr13	24811461	24812461	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024473, intron 4 of 4)	B2_Mm2|SINE|B2	10304.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63130828-4	chr14	63130317	63131317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	8355.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-40950475-2	chr14	40949975	40950975	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	-2266.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-36032641-3	chr12	36032167	36033167	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025359, intron 1 of 5)	intron (NM_025359, intron 1 of 5)	9811.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103250319-4	chr15	103249808	103250808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302338, intron 2 of 2)	intron (NM_001302338, intron 2 of 2)	1368.0	NM_001302338	18022.0	Mm.457989	NM_008685	ENSMUSG00000058794	Nfe2	NF-E2|NF-E2/P45|p45|p45NFE2|p45nf-e2	nuclear factor, erythroid derived 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-62015927-3	chr13	62015406	62016406	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113984.0	NM_001039239	630579.0	Mm.440905	NM_001039239	ENSMUSG00000074867	Zfp808	EG630579|Gm7036	zinc finger protein 808	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180768590-4	chr1	180768095	180769095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42552.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134853409-4	chr4	134852884	134853884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355501)	promoter-TSS (NM_001355501)	-39.0	NM_025382	66146.0	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61|Maco1	transmembrane protein 57	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11555974-4	chr8	11555471	11556471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011919)	promoter-TSS (NM_011919)	-92.0	NM_001302457	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22666153-4	chr11	22665622	22666622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153839.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32587768-1	chr4	32587268	32588268	+	1000.0	f1_balb.idr	Intergenic	Intergenic	14614.0	NM_010289	14610.0	Mm.377084	NM_010289	ENSMUSG00000051056	Gja10	Cx-57|Cx59|cx57	gap junction protein, alpha 10	protein-coding	1.5	6.0	3.5	1.0	13.0	2.0
Merged-chr11-75460188-4	chr11	75459672	75460672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1367.0	NR_030711	100042498.0	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-66818106-4	chr10	66817621	66818621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102263.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43466548-4	chr7	43466068	43467068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290316, exon 5 of 10)	exon (NM_001290316, exon 5 of 10)	3335.0	NM_001290316	75690.0	Mm.30200	NM_001290316	ENSMUSG00000070604	Vsig10l	-	V-set and immunoglobulin domain containing 10 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70477526-1	chr8	70477026	70478026	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_001122830)	promoter-TSS (NM_001122830)	-583.0	NM_178771	234378.0	Mm.187090	NM_172052	ENSMUSG00000055707	Klhl26	C630013N10Rik|Klkl26	kelch-like 26	protein-coding	1.5	2.5	7.5	4.0	4.0	3.0
Merged-chr16-21692956-4	chr16	21692434	21693434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001881, intron 1 of 1)	RSINE1|SINE|B4	1731.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98953487-2	chr11	98952987	98953987	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009024, intron 2 of 8)	intron (NM_009024, intron 2 of 8)	-6984.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77961547-4	chr9	77961099	77962099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134255, intron 3 of 7)	intron (NM_134255, intron 3 of 7)	44234.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-25024819-4	chr16	25024311	25025311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-34828.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-10139535-4	chr14	10139066	10140066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 5 of 9)	intron (NM_001360141, intron 5 of 9)	255471.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127165143-4	chr10	127164634	127165634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008080)	promoter-TSS (NM_008080)	-22.0	NR_045166	14421.0	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64621879-2	chr17	64621379	64622379	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	Tigger10|DNA|TcMar-Tigger	20230.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31221720-4	chr6	31221227	31222227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040260, intron 1 of 5)	intron (NR_040260, intron 1 of 5)	1376.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120103053-4	chr8	120102527	120103527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1555.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82462181-4	chr18	82461673	82462673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAG)n|Simple_repeat|Simple_repeat	-12950.0	NM_001025245	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5952184-4	chr19	5951685	5952685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 7 of 17)	intron (NM_001164057, intron 7 of 17)	12021.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17890885-2	chr16	17890385	17891385	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109750, intron 1 of 9)	intron (NM_001109750, intron 1 of 9)	843.0	NM_010048	13356.0	Mm.254515	NM_010048	ENSMUSG00000003166	Dgcr2	9930034O06Rik|DGS-C|Dgsc|Idd|Lan|Sez12|mKIAA0163	DiGeorge syndrome critical region gene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128495114-2	chr10	128494614	128495614	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172259, exon 5 of 7)	exon (NM_172259, exon 5 of 7)	-1228.0	NM_010860	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-30856144-4	chr6	30855641	30856641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149738, intron 10 of 24)	ORR1B1|LTR|ERVL-MaLR	40653.0	NR_149738	54160.0	Mm.39896	NM_017478	ENSMUSG00000025607	Copg2	AW227625|gamma-2-COP	coatomer protein complex, subunit gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116808755-4	chr3	116808268	116809268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081326)	promoter-TSS (NM_001081326)	-602.0	NM_001081326	77559.0	Mm.237099	NM_001081326	ENSMUSG00000033400	Agl	1110061O17Rik|9430004C13Rik|9630046L06Rik|AI850929|C77197	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	protein-coding	72.5	153.5	131.5	75.5	185.5	140.0
Merged-chr12-91735796-4	chr12	91735288	91736288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 3 of 6)	intron (NM_175367, intron 3 of 6)	50648.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-115150072-4	chr13	115149569	115150569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48105.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156660822-3	chr1	156660321	156661321	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023141, intron 4 of 5)	ERVB7_1-LTR_MM|LTR|ERVK	13518.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	20.0	50.5	17.0	10.5	20.0	2.0
Merged-chr2-27071358-4	chr2	27070868	27071868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025376, intron 1 of 4)	intron (NM_025376, intron 1 of 4)	793.0	NM_025376	66139.0	Mm.330087	NM_025376	ENSMUSG00000009214	Mymk	1110002H13Rik|AI131587|Tmem8c|myomaker	myomaker, myoblast fusion factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35099117-4	chr9	35098547	35099547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-17681.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	15.0	43.0	27.5	23.0	100.5	50.5
Merged-chr9-65542399-4	chr9	65541878	65542878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	37709.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25983189-2	chr15	25982689	25983689	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1177.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132689410-4	chr2	132688914	132689914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358261)	promoter-TSS (NM_001358261)	-743.0	NM_001358261	73747.0	Mm.284114	NM_028637	ENSMUSG00000044991	1110034G24Rik	-	RIKEN cDNA 1110034G24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115066949-4	chr11	115066450	115067450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4911.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23896802-4	chr18	23896314	23897314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57874.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-189023212-2	chr1	189022712	189023712	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15372.0	NR_153196	226823.0	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22962256-4	chr8	22961764	22962764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12572.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	4.5	4.0	14.5	11.5	2.0	3.5
Merged-chr13-97137952-4	chr13	97137447	97138447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271464)	promoter-TSS (NM_001271464)	10.0	NM_001271464	320806.0	Mm.219675	NM_177266	ENSMUSG00000021666	Gfm2	6530419G12Rik|A930009M04Rik|EF-G2mt|EFG2|MST027|RRF2mt	G elongation factor, mitochondrial 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40702663-4	chr19	40702129	40703129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	42859.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	3.0	24.0	23.5	10.5	7.0	20.0
Merged-chr9-101074527-4	chr9	101074035	101075035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001100451)	promoter-TSS (NM_001100451)	-227.0	NM_001100451	77853.0	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	MSL complex subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76701449-4	chr15	76700941	76701941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027122)	promoter-TSS (NM_027122)	-101.0	NM_027122	69572.0	Mm.34920	NM_027122	ENSMUSG00000019080	Mfsd3	2310010G13Rik	major facilitator superfamily domain containing 3	protein-coding	6.5	29.0	23.0	0.0	2.0	0.5
Merged-chr18-57591777-4	chr18	57591284	57592284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029290, intron 3 of 6)	intron (NM_029290, intron 3 of 6)	-39387.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4597177-2	chr7	4596677	4597677	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207270, intron 5 of 19)	intron (NM_207270, intron 5 of 19)	6864.0	NM_207270	545902.0	Mm.188925	NM_207270	ENSMUSG00000035429	Ptprh	R-PTP-H|sap-1	protein tyrosine phosphatase, receptor type, H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60682951-3	chr13	60682453	60683453	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	80742.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	59.5	41.5	46.5	57.5	84.5	38.0
Merged-chr4-151108620-4	chr4	151108124	151109124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 11 of 23)	CpG	19054.0	NM_001308446	105704528.0	Mm.415128	NM_001308446	ENSMUSG00000078491	Gm13090	-	predicted gene 13090	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-57610710-5	chr19	57610118	57611118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181415)	promoter-TSS (NM_181415)	-416.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	292.5	456.5	355.0	239.0	408.5	354.5
Merged-chr8-95428357-4	chr8	95427858	95428858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008187, intron 1 of 5)	intron (NM_008187, intron 1 of 5)	6511.0	NM_008187	14894.0	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135438220-4	chr3	135437756	135438756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025356)	promoter-TSS (NM_025356)	24.0	NM_001356594	66105.0	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121284984-3	chr5	121284494	121285494	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181421, intron 11 of 75)	intron (NM_181421, intron 11 of 75)	64775.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52914748-4	chr13	52914263	52915263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016709, intron 3 of 9)	intron (NM_016709, intron 3 of 9)	14914.0	NM_016709	11992.0	Mm.252034	NM_016709	ENSMUSG00000021460	Auh	C77140|W91705	AU RNA binding protein/enoyl-coenzyme A hydratase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22411497-4	chr9	22411000	22412000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026739)	promoter-TSS (NM_026739)	-11.0	NM_026739	68283.0	Mm.280669	NM_026739	ENSMUSG00000036411	9530077C05Rik	1110003N12Rik|mKIAA0895	RIKEN cDNA 9530077C05 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-16358935-4	chr16	16358331	16359331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276341)	promoter-TSS (NM_001276341)	200.0	NM_152816	74006.0	Mm.218820	NM_152816	ENSMUSG00000022789	Dnm1l	6330417M19Rik|AI450666|Dlp1|Dnmlp1|Drp1|python	dynamin 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105170545-4	chr8	105170053	105171053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161457)	promoter-TSS (NM_001161457)	-121.0	NM_001161457	12400.0	Mm.2018	NM_022309	ENSMUSG00000031885	Cbfb	AI893578|PEA2|PEBP2b|Pebp2|Pebpb2	core binding factor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-124423768-4	chr9	124423272	124424272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015516)	promoter-TSS (NR_015516)	-15.0	NR_102721	75135.0	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41605763-4	chr13	41605253	41606253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163572)	promoter-TSS (NM_001163572)	-463.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75152837-4	chr8	75152313	75153313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43304.0	NM_008566	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	0.0	7.0	0.5	4.0	16.5	5.5
Merged-chr6-30509756-4	chr6	30509236	30510236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178625)	promoter-TSS (NM_178625)	37.0	NM_001347087	72649.0	Mm.45418	NM_178625	ENSMUSG00000029782	Tmem209	2700094F01Rik|AI428435	transmembrane protein 209	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-37999581-4	chr18	37999075	38000075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205336)	promoter-TSS (NM_001205336)	-606.0	NM_001205336	106952.0	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	2.0	12.0	11.5	6.5	17.5	8.5
Merged-chr3-139064529-4	chr3	139064033	139065033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 1 of 13)	MLT1G|LTR|ERVL-MaLR	10668.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	34.5	61.0	18.5	12.5	39.5	33.5
Merged-chr11-119377537-4	chr11	119377026	119378026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178743, intron 14 of 16)	intron (NM_178743, intron 14 of 16)	-12946.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120647069-2	chr11	120646569	120647569	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026751, exon 1 of 1)	3' UTR (NM_026751, exon 1 of 1)	1268.0	NM_026751	68515.0	Mm.194594	NM_026751	ENSMUSG00000025141	Myadml2	1110012N22Rik	myeloid-associated differentiation marker-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153752714-4	chr1	153752221	153753221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011882, intron 2 of 8)	intron (NM_011882, intron 2 of 8)	3295.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32586997-4	chr2	32586518	32587518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276425)	promoter-TSS (NM_001276425)	-60.0	NM_001276425	20448.0	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34368592-1	chr17	34368092	34369092	+	1000.0	f1_c57bl6.idr	intron (NM_079835, intron 8 of 8)	intron (NM_079835, intron 8 of 8)	-8540.0	NM_001111094	100038862.0	Mm.440426	NM_201405	ENSMUSG00000062638	Btnl1	Btnl3|Gm316|Gm33	butyrophilin-like 1	protein-coding	12.5	27.5	9.0	4.0	4.5	4.0
Merged-chr11-43395449-4	chr11	43394937	43395937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20976.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32361594-4	chr18	32361070	32362070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045403, intron 2 of 2)	intron (NR_045403, intron 2 of 2)	-15647.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51635857-4	chr11	51635371	51636371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025346)	promoter-TSS (NM_025346)	25.0	NM_025346	66089.0	Mm.288183	NM_025346	ENSMUSG00000001054	Rmnd5b	0610039K22Rik|Gid2	required for meiotic nuclear division 5 homolog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29827400-4	chr6	29826924	29827924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	intron (NM_001171000, intron 1 of 16)	-26317.0	NM_001347084	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	16.5	19.5	27.0	16.5	24.0	26.5
Merged-chr5-30920742-4	chr5	30920234	30921234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001349066)	promoter-TSS (NM_001349066)	-825.0	NM_001310525	16548.0	Mm.22451	NM_008439	ENSMUSG00000029162	Khk	-	ketohexokinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59759833-4	chr15	59759324	59760324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35135.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70848004-4	chr17	70847479	70848479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164074, intron 1 of 2)	intron (NM_001164074, intron 1 of 2)	-1202.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	11.0	24.0	44.5	12.0	45.5	30.5
Merged-chr2-155517922-4	chr2	155517426	155518426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019811)	promoter-TSS (NM_019811)	-117.0	NM_019811	60525.0	Mm.255026	NM_019811	ENSMUSG00000027605	Acss2	1110017C11Rik|ACAS|Acas1|Acas2|AceCS1|Acs1	acyl-CoA synthetase short-chain family member 2	protein-coding	0.5	15.5	14.5	2.0	21.0	21.0
Merged-chr1-39368384-2	chr1	39367884	39368884	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252219, intron 2 of 4)	CpG	533.0	NM_001252218	114641.0	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40883903-2	chr10	40883403	40884403	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027879)	promoter-TSS (NM_027879)	369.0	NM_031877	83767.0	Mm.41353	NM_031877	ENSMUSG00000019831	Wasf1	AI195380|AI838537|Scar|WAVE|WAVE-1	WAS protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35126465-4	chr17	35125946	35126946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033477)	promoter-TSS (NM_033477)	44.0	NM_033477	114585.0	Mm.42070	NM_033477	ENSMUSG00000043311	D17H6S53E	G4|NG34	DNA segment, Chr 17, human D6S53E	protein-coding	34.5	157.5	121.5	35.0	157.5	117.5
Merged-chr5-21737189-4	chr5	21736700	21737700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028431)	promoter-TSS (NM_028431)	40.0	NM_028431	73078.0	Mm.301655	NM_028431	ENSMUSG00000029017	Pmpcb	3110004O18Rik|MPP11|MPPB|MPPP52	peptidase (mitochondrial processing) beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39412952-4	chr10	39412449	39413449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	43150.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118488469-2	chr11	118487969	118488969	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153103, exon 14 of 14)	non-coding (NR_153103, exon 14 of 14)	11637.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-48101053-4	chr3	48100555	48101555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-74296.0	NR_040408	666202.0	Mm.465057	NR_040408	ENSMUSG00000103257	Gm7977	EG666202	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide pseudogene	pseudo	4.5	0.5	2.0	12.0	5.0	2.5
Merged-chr14-77036762-4	chr14	77036267	77037267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310648)	promoter-TSS (NM_001310648)	-5.0	NM_001310648	108811.0	Mm.102168	NM_175369	ENSMUSG00000034795	Ccdc122	4933415L06Rik	coiled-coil domain containing 122	protein-coding	265.0	670.5	488.5	178.5	428.5	303.0
Merged-chr15-8446605-4	chr15	8446119	8447119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2156.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128373494-4	chr10	128372978	128373978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3441.0	NM_001081040	210582.0	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-93122877-3	chr6	93122380	93123380	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	182298.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102983334-4	chr14	102982834	102983834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_039592)	promoter-TSS (NR_039592)	-697.0	NM_177715	239217.0	Mm.246466	NM_177715	ENSMUSG00000098557	Kctd12	AU046135|AW538430|Pfet1|Pfetin	potassium channel tetramerisation domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71930254-4	chr6	71929758	71930758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009088, intron 11 of 33)	intron (NM_009088, intron 11 of 33)	21205.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22071431-4	chr9	22070957	22071957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310759)	promoter-TSS (NM_001310759)	-81.0	NM_001310759	319601.0	Mm.347707	NM_177318	ENSMUSG00000038895	Zfp653	E430039K05Rik|Znf653	zinc finger protein 653	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133631170-4	chr4	133630666	133631666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017968, intron 1 of 7)	intron (NM_001017968, intron 1 of 7)	2263.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	40.0	51.0	69.5	41.0	104.0	74.5
Merged-chr13-75845997-4	chr13	75845496	75846496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053108, intron 1 of 2)	intron (NM_053108, intron 1 of 2)	6110.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	28.5	53.0	39.0	34.0	61.0	73.5
Merged-chr13-67375773-4	chr13	67375276	67376276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001186)	promoter-TSS (NM_001001186)	-13.0	NM_001001186	408065.0	Mm.461583	NM_001001186	ENSMUSG00000078995	Zfp456	BC065418|Rslcan-13	zinc finger protein 456	protein-coding	52.5	226.0	74.0	4.5	10.5	10.0
Merged-chr14-27186949-4	chr14	27186507	27187507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	RSINE1|SINE|B4	43014.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87255886-4	chr6	87255380	87256380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_054041, exon 10 of 18)	exon (NM_054041, exon 10 of 18)	79895.0	NM_054041	69538.0	Mm.232525	NM_054041	ENSMUSG00000033420	Antxr1	2310008J16Rik|2810405N18Rik|Antrx1|Tem8	anthrax toxin receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28378556-4	chr7	28378063	28379063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011756, intron 1 of 1)	CpG	665.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-14682982-5	chr18	14682498	14683498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161369)	promoter-TSS (NM_001161369)	-84.0	NM_001161371	268996.0	Mm.31761	NM_009280	ENSMUSG00000037013	Ss18	D130059H17|Ssxt|Syt	SS18, nBAF chromatin remodeling complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92828275-2	chr16	92827775	92828775	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2201.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53161932-2	chr4	53161432	53162432	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2037.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21976552-4	chr10	21976057	21977057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 3 of 13)	intron (NM_001161845, intron 3 of 13)	-2115.0	NM_001161847	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	5.0	26.5	16.0	6.5	17.0	12.0
Merged-chr11-87430331-2	chr11	87429831	87430831	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 1 of 30)	B3|SINE|B2	2740.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139214124-4	chr4	139213622	139214622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	20011.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	96.5	263.0	163.5	62.5	130.5	104.0
Merged-chr7-128333115-4	chr7	128332608	128333608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34977.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-75142692-4	chr1	75142128	75143128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305232)	promoter-TSS (NM_001305232)	83.0	NM_026977	69171.0	Mm.28193	NM_026977	ENSMUSG00000033159	Cnppd1	1810031K17Rik|AU043960	cyclin Pas1/PHO80 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45909510-2	chr9	45909010	45910010	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001281934, exon 3 of 17)	exon (NM_001281934, exon 3 of 17)	-2599.0	NM_001361112	235315.0	Mm.220945	NM_178709	ENSMUSG00000042790	Rnf214	D130054N24Rik	ring finger protein 214	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63074351-2	chr14	63073851	63074851	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	19278.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61451726-4	chr10	61451232	61452232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010124, intron 1 of 2)	intron (NM_010124, intron 1 of 2)	937.0	NM_010124	13688.0	Mm.259516	NM_010124	ENSMUSG00000020091	Eif4ebp2	2810011I19Rik|4E-BP2|AA792569|BC010348|PHAS-II	eukaryotic translation initiation factor 4E binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-126497002-4	chr2	126496512	126497512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 1 of 27)	intron (NM_001359975, intron 1 of 27)	2835.0	NM_001359975	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182282753-4	chr1	182282247	182283247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360783)	promoter-TSS (NM_001360783)	54.0	NM_007853	13244.0	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-20017742-4	chr3	20017236	20018236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 8 of 16)	intron (NM_080634, intron 8 of 16)	17574.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-30601360-4	chr3	30600860	30601860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030557)	promoter-TSS (NM_030557)	-727.0	NM_001289623	80732.0	Mm.200378	NM_030557	ENSMUSG00000037730	Mynn	2810011C24Rik|AA415053|AI661031|AW049392|Mynr|SBBIZ1	myoneurin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-97462996-4	chr16	97462496	97463496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010846)	promoter-TSS (NM_010846)	-90.0	NR_003520	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37138933-4	chr10	37138405	37139405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008538)	promoter-TSS (NM_008538)	21.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-133458900-4	chr2	133458388	133459388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93271.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55735996-4	chr14	55735488	55736488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9696.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57289901-2	chr17	57289401	57290401	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 1 of 25)	intron (NM_001163816, intron 1 of 25)	10801.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114669130-4	chr11	114668617	114669617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001048058, intron 2 of 3)	CpG-2790	336.0	NM_001048058	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158175193-4	chr2	158174711	158175711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16797.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80264362-4	chr15	80263866	80264866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175109)	promoter-TSS (NM_175109)	-60.0	NM_175109	66538.0	Mm.39485	NM_175109	ENSMUSG00000051518	Rps19bp1	2510038A11Rik|AI604923|S19BP	ribosomal protein S19 binding protein 1	protein-coding	3.0	15.0	12.0	19.5	18.5	12.0
Merged-chr9-118662696-4	chr9	118662205	118663205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 7 of 27)	intron (NM_133721, intron 7 of 27)	-48987.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	71.5	219.0	173.5	46.5	153.0	114.0
Merged-chr4-148626997-4	chr4	148626477	148627477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145556)	promoter-TSS (NM_145556)	19.0	NR_027864	230908.0	Mm.22453	NM_145556	ENSMUSG00000041459	Tardbp	1190002A23Rik|C85084|TDP-43|Tdp43	TAR DNA binding protein	protein-coding	307.0	640.0	492.5	235.5	503.0	323.0
Merged-chr2-60211906-4	chr2	60211405	60212405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020575, intron 1 of 9)	intron (NM_020575, intron 1 of 9)	1969.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53141441-4	chr19	53140941	53141941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164101, intron 1 of 13)	intron (NM_001164101, intron 1 of 13)	998.0	NM_001164101	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95977307-4	chr3	95976810	95977810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-8200.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	23.5	52.0	34.5	35.0	65.5	34.0
Merged-chr15-26365613-4	chr15	26365100	26366100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310774, intron 2 of 2)	intron (NM_001310774, intron 2 of 2)	56552.0	NM_001310774	211147.0	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114611427-2	chr7	114610927	114611927	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	24930.0	NM_001289444	12310.0	Mm.4361	NM_007587	ENSMUSG00000030669	Calca	CA|CGRP-1|CGRP1|Calc|Calc1|Cgrp|Ct|Ctn	calcitonin/calcitonin-related polypeptide, alpha	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr4-132075426-4	chr4	132074928	132075928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001128607)	promoter-TSS (NM_001128607)	-115.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142398176-4	chr7	142397659	142398659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10289.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191849649-4	chr1	191849155	191850155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28182.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	97.0	210.5	157.0	39.5	177.0	117.5
Merged-chr15-78298829-4	chr15	78298328	78299328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287389, intron 1 of 11)	intron (NM_001287389, intron 1 of 11)	6893.0	NM_007781	12984.0	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	1.5	8.5	10.0	1.0	0.5	6.5
Merged-chr16-92801055-4	chr16	92800556	92801556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	25018.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-44147883-4	chr1	44147369	44148369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011729, exon 1 of 15)	5' UTR (NM_011729, exon 1 of 15)	125.0	NM_011729	22592.0	Mm.2213	NM_011729	ENSMUSG00000026048	Ercc5	Xpg	excision repair cross-complementing rodent repair deficiency, complementation group 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84707438-4	chr8	84706938	84707938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081981, exon 11 of 11)	3' UTR (NM_001081981, exon 11 of 11)	5981.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	23.0	55.0	37.0	46.5	68.5	30.5
Merged-chr4-106840116-4	chr4	106839546	106840546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-35039.0	NM_001347159	329910.0	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	2.0	5.0	3.0	0.0	0.0	0.5
Merged-chr17-10500981-4	chr17	10500547	10501547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 4 of 4)	intron (NM_027032, intron 4 of 4)	44831.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91235593-4	chr1	91235102	91236102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-14702.0	NM_001355763	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-50059027-4	chr5	50058492	50059492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133911)	promoter-TSS (NM_133911)	4.0	NM_133911	70693.0	Mm.272974	NM_133911	ENSMUSG00000029090	Adgra3	3830613O22Rik|AU044632|Gpr125|Tem5-like	adhesion G protein-coupled receptor A3	protein-coding	0.0	9.5	3.0	0.0	9.0	2.0
Merged-chr1-91398812-4	chr1	91398295	91399295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355152)	promoter-TSS (NM_001355152)	28.0	NM_023343	67444.0	Mm.337240	NM_023343	ENSMUSG00000026309	Ilkap	0710007A14Rik|1600009O09Rik|PP2C-DELTA	integrin-linked kinase-associated serine/threonine phosphatase 2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91927350-2	chr2	91926850	91927850	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007699, exon 2 of 2)	exon (NM_007699, exon 2 of 2)	4352.0	NM_001291481	17242.0	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32854335-4	chr5	32853830	32854830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194340)	promoter-TSS (NM_194340)	-100.0	NM_194340	215476.0	Mm.248721	NM_194340	ENSMUSG00000054280	Prr14l	6030436E02Rik|C330019G07Rik|Prl14l	proline rich 14-like	protein-coding	34.0	46.5	34.0	23.0	35.0	46.5
Merged-chr9-4307964-2	chr9	4307464	4308464	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_136940, intron 2 of 5)	intron (NR_136940, intron 2 of 5)	1530.0	NM_026276	67618.0	Mm.33970	NM_026276	ENSMUSG00000025894	Aasdhppt	2010309J24Rik|2810407B07Rik|AASD-PPT|CGI-80|LYS2|LYS5	aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122234827-4	chr2	122234344	122235344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146126)	promoter-TSS (NM_146126)	5.0	NM_146126	20322.0	Mm.371580	NM_146126	ENSMUSG00000027227	Sord	Sdh-1|Sdh1|Sodh-1	sorbitol dehydrogenase	protein-coding	8.0	25.0	7.5	10.0	9.5	7.0
Merged-chr1-34838488-4	chr1	34837980	34838980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160236, intron 1 of 6)	ORR1B1|LTR|ERVL-MaLR	4570.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-5038419-4	chr7	5037905	5038905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039532)	promoter-TSS (NM_001039532)	41.0	NM_001039532	654801.0	Mm.333548	NM_001039532	ENSMUSG00000043290	Zfp784	C730049F21Rik|Znf784	zinc finger protein 784	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32967493-4	chr2	32967000	32968000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4199.0	NR_002898	104367.0	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-83885338-4	chr3	83884822	83885822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43714.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137286800-4	chr5	137286315	137287315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1439.0	NM_009599	11423.0	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	0.0	2.0	4.0	5.5	4.5	0.5
Merged-chr13-42527120-4	chr13	42526598	42527598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-153701.0	NM_001302635	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-139062297-4	chr3	139061781	139062781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 1 of 13)	intron (NM_001356388, intron 1 of 13)	12920.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	72.0	83.5	74.5	12.5	28.0	21.5
Merged-chr17-71127661-4	chr17	71127150	71128150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010867)	TTS (NM_010867)	-55882.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84840701-4	chr8	84840170	84841170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001297607)	promoter-TSS (NM_001297607)	-5.0	NM_009010	19358.0	Mm.255539	NM_009010	ENSMUSG00000003813	Rad23a	2310040P19Rik|AL024030|HR23A|mHR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding	4.0	26.0	16.5	10.5	26.5	17.0
Merged-chr16-92874239-4	chr16	92873719	92874719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48145.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-104361917-3	chr11	104361415	104362415	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 5 of 14)	RLTR19|LTR|ERVK	80376.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-31150828-2	chr8	31150331	31151331	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_103719, exon 1 of 8)	non-coding (NR_103719, exon 1 of 8)	515.0	NR_103719	234138.0	Mm.349800	NM_144927	ENSMUSG00000031577	Tti2	-	TELO2 interacting protein 2	protein-coding	20.0	48.5	43.5	12.5	39.0	42.0
Merged-chr6-86401268-4	chr6	86400771	86401771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2948.0	NM_001164079	21841.0	Mm.333219	NM_011585	ENSMUSG00000071337	Tia1	2310050N03Rik|AI256674|TIA-1|mTIA-1	cytotoxic granule-associated RNA binding protein 1	protein-coding	1.0	2.0	2.0	0.0	0.0	0.5
Merged-chr14-31596660-4	chr14	31596173	31597173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-19290.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86526530-4	chr1	86526042	86527042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360831)	promoter-TSS (NM_001360831)	-15.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30395302-4	chr16	30394778	30395778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-6748.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118145935-4	chr11	118145429	118146429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16710.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115071958-4	chr11	115071543	115072543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-10004.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111506440-4	chr10	111505922	111506922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009344, exon 1 of 2)	exon (NM_009344, exon 1 of 2)	136.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24393074-7	chr16	24392641	24393641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178665)	promoter-TSS (NM_178665)	-209.0	NM_178665	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-72607190-4	chr11	72606665	72607665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025985)	promoter-TSS (NM_025985)	-96.0	NM_025985	67128.0	Mm.458052	NM_025985	ENSMUSG00000020794	Ube2g1	2700059C12Rik|AI256795|AU014992|AW552068|D130023C12Rik	ubiquitin-conjugating enzyme E2G 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114045116-4	chr6	114044610	114045610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3030.0	NM_009723	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5895086-2	chr19	5894589	5895589	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362045)	promoter-TSS (NM_001362045)	-961.0	NM_198634	332359.0	Mm.329642	NM_198634	ENSMUSG00000044390	Tigd3	-	tigger transposable element derived 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45582972-4	chr17	45582480	45583480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	9413.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27825107-4	chr17	27824601	27825601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4559.0	NM_001271511	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	21.0	82.5	65.0	26.5	102.0	54.0
Merged-chr10-110920109-4	chr10	110919642	110920642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007792)	promoter-TSS (NM_007792)	-34.0	NM_007792	13008.0	Mm.2020	NM_007792	ENSMUSG00000020186	Csrp2	AW551867|Crp2|SmLim	cysteine and glycine-rich protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116624295-4	chr11	116623795	116624795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167680)	promoter-TSS (NM_001167680)	-43.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	92.0	202.0	159.5	97.0	213.5	143.0
Merged-chr7-127471376-4	chr7	127470874	127471874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145589)	promoter-TSS (NM_145589)	-240.0	NM_145589	233895.0	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59160757-4	chr2	59160253	59161253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026361)	promoter-TSS (NM_026361)	-70.0	NM_001362394	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58933777-4	chr15	58933269	58934269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175151)	promoter-TSS (NM_175151)	-39.0	NM_175151	69694.0	Mm.383230	NM_175151	ENSMUSG00000050891	Tatdn1	2310079P03Rik|CDA11	TatD DNase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49943865-4	chr16	49943347	49944347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11983.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112799979-4	chr13	112799508	112800508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008247)	promoter-TSS (NM_008247)	-769.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	72.5	145.5	110.5	91.5	142.0	83.0
Merged-chr19-12464346-4	chr19	12463860	12464860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010821, exon 2 of 2)	3' UTR (NM_010821, exon 2 of 2)	3581.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	272.0	615.5	571.0	316.5	793.5	661.5
Merged-chr18-53256377-4	chr18	53255892	53256892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	L1MC5|LINE|L1	10730.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139131089-4	chr4	139130586	139131586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033745)	promoter-TSS (NR_033745)	27.0	NM_001163006	433771.0	Mm.305990	NM_001163006	ENSMUSG00000050608	Minos1	2310028O11Rik	mitochondrial inner membrane organizing system 1	protein-coding	49.0	222.0	148.0	46.5	217.0	155.0
Merged-chr11-46785177-3	chr11	46784659	46785659	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-25640.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	12.0	10.0	6.0	0.0	1.5	0.0
Merged-chr12-24710331-4	chr12	24709835	24710835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009104, intron 4 of 9)	intron (NM_009104, intron 4 of 9)	2081.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	22.0	59.5	57.5	17.5	78.5	44.5
Merged-chr3-144718730-4	chr3	144718226	144719226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 1 of 10)	intron (NM_001282037, intron 1 of 10)	1609.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75857266-7	chr15	75856824	75857824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5015.0	NM_026960	69146.0	Mm.27385	NM_026960	ENSMUSG00000022575	Gsdmd	1810036L03Rik|AW558049|DF5L|Dfna5l|Gsdmdc1|M2-4	gasdermin D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54711832-2	chr11	54711332	54712332	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75871.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50038980-4	chr11	50038499	50039499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 1 of 7)	intron (NM_001290750, intron 1 of 7)	13668.0	NM_001290750	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120037578-2	chr6	120037078	120038078	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001199083, exon 1 of 28)	exon (NM_001199083, exon 1 of 28)	1077.0	NM_001185020	232341.0	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25747752-4	chr14	25747301	25748301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 2 of 3)	intron (NM_001101433, intron 2 of 3)	21055.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117124546-2	chr4	117124046	117125046	+	1000.0	f0_balb.idr|f1_c57bl6.idr	non-coding (NR_024078, exon 2 of 7)	non-coding (NR_024078, exon 2 of 7)	1179.0	NR_024078	78611.0	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	73.5	113.5	132.5	68.5	191.5	137.0
Merged-chr5-29839633-4	chr5	29839137	29840137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-103701.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120262928-4	chr14	120262443	120263443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-12726.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-37426459-2	chr6	37425959	37426959	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	ORR1A4|LTR|ERVL-MaLR	15689.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-89423336-3	chr7	89422830	89423830	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2976.0	NR_102276	101521.0	Mm.26902	NR_102276	ENSMUSG00000109311	AI314278	-	expressed sequence AI314278	ncRNA	0.0	0.0	4.5	11.0	2.0	7.0
Merged-chr7-79660127-4	chr7	79659630	79660630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029835)	promoter-TSS (NM_029835)	-66.0	NM_029835	77011.0	Mm.28132	NM_029835	ENSMUSG00000046591	Ticrr	5730590G19Rik|BC028450|Lrrk1	TOPBP1-interacting checkpoint and replication regulator	protein-coding	0.0	2.0	3.5	1.0	1.5	1.0
Merged-chr7-110166383-4	chr7	110165897	110166897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44338.0	NM_009516	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80134067-4	chr15	80133570	80134570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025609, intron 1 of 10)	intron (NM_025609, intron 1 of 10)	916.0	NM_025609	66513.0	Mm.288245	NM_025609	ENSMUSG00000022414	Tab1	2310012M03Rik|Map3k7ip1|b2b449Clo	TGF-beta activated kinase 1/MAP3K7 binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-39783591-2	chr15	39783091	39784091	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164466, intron 9 of 9)	intron (NM_001164466, intron 9 of 9)	-13454.0	NR_045788	100503072.0	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	-	predicted gene 16291	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148443621-1	chr2	148443121	148444121	+	1000.0	f0_balb.idr	promoter-TSS (NM_010740)	promoter-TSS (NM_010740)	-86.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120918715-4	chr7	120918235	120919235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164096, intron 1 of 19)	intron (NM_001164096, intron 1 of 19)	991.0	NM_001164096	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152193841-4	chr3	152193361	152194361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025926)	promoter-TSS (NM_025926)	-16.0	NM_025926	67035.0	Mm.46746	NM_025926	ENSMUSG00000028035	Dnajb4	1700029A20Rik|2010306G19Rik|5730460G06Rik	DnaJ heat shock protein family (Hsp40) member B4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86396753-3	chr6	86396253	86397253	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025823, intron 1 of 5)	intron (NM_025823, intron 1 of 5)	397.0	NM_001355687	66881.0	Mm.30849	NM_025823	ENSMUSG00000029998	Pcyox1	1200015P13Rik|AI115532|AI448340|PCL1|Pcly	prenylcysteine oxidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-14159476-4	chr16	14158986	14159986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030252)	promoter-TSS (NR_030252)	-140.0	NR_030252	723916.0		NR_030252	ENSMUSG00000070074	Mir484	Mirn484|mir-484|mmu-mir-484	microRNA 484	ncRNA	37.0	101.0	61.5	12.5	90.0	60.0
Merged-chr6-140678814-4	chr6	140678296	140679296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009637)	TTS (NM_009637)	51911.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-157549880-4	chr1	157549370	157550370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159986, intron 12 of 25)	intron (NM_001159986, intron 12 of 25)	23700.0	NM_001159986	89867.0	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding	15.5	23.0	20.0	24.0	3.5	26.0
Merged-chr4-150008581-4	chr4	150008047	150009047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173371, intron 1 of 4)	intron (NM_173371, intron 1 of 4)	476.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3147447-2	chr11	3146951	3147951	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 14 of 32)	RMER4B|LTR|ERVK	23430.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91053003-4	chr1	91052514	91053514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310732)	promoter-TSS (NM_001310732)	-430.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-84990089-4	chr16	84989602	84990602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 12 of 15)	intron (NM_001198825, intron 12 of 15)	17891.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45703836-2	chr7	45703336	45704336	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009800, exon 8 of 9)	exon (NM_009800, exon 8 of 9)	-1411.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	0.0	0.0	1.5	0.0	0.0	1.5
Merged-chr15-78913836-4	chr15	78913320	78914320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020271)	promoter-TSS (NM_020271)	-99.0	NM_020271	57028.0	Mm.263169	NM_020271	ENSMUSG00000116165	Pdxp	1600027H05Rik|AB041662|PLPP	pyridoxal (pyridoxine, vitamin B6) phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126832754-4	chr8	126832239	126833239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16281.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-113930906-4	chr9	113930396	113931396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083319)	promoter-TSS (NM_001083319)	-38.0	NM_001083319	22221.0	Mm.28052	NM_013699	ENSMUSG00000009741	Ubp1	Cp2b|LBP-1a|LBP-1b|NF2d9	upstream binding protein 1	protein-coding	33.0	118.5	64.5	62.0	60.0	84.0
Merged-chr9-38728400-4	chr9	38727911	38728911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145957, intron 9 of 18)	intron (NM_001145957, intron 9 of 18)	10143.0	NM_172767	67776.0	Mm.290950	NM_172767	ENSMUSG00000023186	Vwa5a	5830475I06Rik|AW552491|BCSC-1|E130119J22|Loh11cr2a	von Willebrand factor A domain containing 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-5083430-4	chr7	5082897	5083897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010147, intron 2 of 11)	intron (NM_010147, intron 2 of 11)	3162.0	NM_001252454	13854.0	Mm.3091	NM_010147	ENSMUSG00000035203	Epn1	AA269831|Ibp1	epsin 1	protein-coding	6.0	24.0	14.0	5.0	32.0	16.0
Merged-chr14-73176423-2	chr14	73175923	73176923	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134083, intron 12 of 14)	intron (NM_134083, intron 12 of 14)	30428.0	NR_030459	751541.0		NR_030459	ENSMUSG00000076121	Mir687	Mirn687|mir-687|mmu-mir-687	microRNA 687	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21510193-4	chr9	21509758	21510758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324510)	promoter-TSS (NM_001324510)	-24.0	NR_136911	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19554029-4	chr10	19553537	19554537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37912.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91684021-4	chr6	91683550	91684550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009320)	promoter-TSS (NM_009320)	-17.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140830606-4	chr5	140830110	140831110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010302)	promoter-TSS (NM_010302)	-179.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19907475-4	chr10	19906981	19907981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008822, exon 1 of 10)	exon (NM_008822, exon 1 of 10)	193.0	NM_008822	18634.0	Mm.338363	NM_008822	ENSMUSG00000020003	Pex7	MmPEX7	peroxisomal biogenesis factor 7	protein-coding	0.0	3.5	1.5	0.0	3.5	1.5
Merged-chr10-67683807-4	chr10	67683302	67684302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111843.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161876870-4	chr1	161876352	161877352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357401)	promoter-TSS (NM_001357401)	-170.0	NM_001357402	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	43.0	138.5	101.0	35.5	115.0	73.0
Merged-chr13-55593150-4	chr13	55592637	55593637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026211)	promoter-TSS (NM_026211)	2.0	NM_026211	67511.0	Mm.45233	NM_026211	ENSMUSG00000058569	Tmed9	2400003B06Rik	transmembrane p24 trafficking protein 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-3539075-3	chr13	3538554	3539554	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008112, intron 1 of 10)	intron (NM_008112, intron 1 of 10)	979.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	62.0	115.5	61.0	44.5	156.5	69.0
Merged-chr10-77986270-2	chr10	77985770	77986770	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008826)	TTS (NM_008826)	7620.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76010901-4	chr14	76010423	76011423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026816)	promoter-TSS (NM_026816)	-58.0	NM_026816	68705.0	Mm.20415	NM_026816	ENSMUSG00000067995	Gtf2f2	1110031C13Rik|AI326315	general transcription factor IIF, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142577286-4	chr3	142576779	142577779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	16923.0	NM_001289493	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21787395-4	chr13	21786898	21787898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178202)	promoter-TSS (NM_178202)	-90.0	NM_178202	319188.0	Mm.264645	NM_178202	ENSMUSG00000069308	Hist1h2bp	-	histone cluster 1, H2bp	protein-coding	5.0	2.0	5.5	4.0	8.0	2.5
Merged-chr10-127311237-4	chr10	127310738	127311738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003913, intron 1 of 20)	intron (NM_001003913, intron 1 of 20)	548.0	NM_001003913	216443.0	Mm.28173	NM_001003913	ENSMUSG00000040354	Mars	Metrs|Mtrns	methionine-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-27030673-4	chr9	27030175	27031175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178027)	promoter-TSS (NM_178027)	500.0	NM_178113	78658.0	Mm.251777	NM_178113	ENSMUSG00000035024	Ncapd3	2810487N22Rik|4632407J06Rik|AI195468|AU018739|B130055D15Rik|mKIAA0056	non-SMC condensin II complex, subunit D3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126975572-4	chr7	126975096	126976096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026638)	promoter-TSS (NM_026638)	250.0	NM_001362232	381922.0	Mm.304201	NM_001362232		Cdiptos	D830044I16Rik	CDIP transferase, opposite strand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-43385326-4	chr11	43384857	43385857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10896.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71440727-4	chr6	71440200	71441200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024288)	promoter-TSS (NM_024288)	-63.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100845621-4	chr7	100845124	100846124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177073)	TTS (NM_177073)	17789.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	1.0	1.0	5.0	5.5	5.0	3.5
Merged-chr10-99262423-1	chr10	99261923	99262923	+	1000.0	f0_balb.idr	promoter-TSS (NM_026268)	promoter-TSS (NM_026268)	-808.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-149280984-4	chr3	149280463	149281463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040591)	TTS (NR_040591)	6226.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	13.0	12.0	13.5	12.5	24.0	28.0
Merged-chr11-98768373-2	chr11	98767873	98768873	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001313983, exon 10 of 10)	exon (NM_001313983, exon 10 of 10)	7004.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-130834495-4	chr7	130833985	130834985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-31239.0	NM_133942	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128139691-2	chr7	128139191	128140191	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021334, intron 14 of 29)	MTD|LTR|ERVL-MaLR	10123.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101084762-2	chr11	101084262	101085262	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001305982, exon 4 of 10)	exon (NM_001305982, exon 4 of 10)	2197.0	NR_155015	71743.0	Mm.182271	NM_027896	ENSMUSG00000001755	Coasy	1300003G02Rik|Dpck|Ppat|Ukr1	Coenzyme A synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127320300-4	chr10	127319841	127320841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1623.0	NM_001285785	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	10.0	50.0	42.5	7.0	59.0	37.0
Merged-chr2-93823729-4	chr2	93823255	93824255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1187.0	NM_001355076	14043.0	Mm.4336	NM_010163	ENSMUSG00000027198	Ext2	AI893565	exostoses (multiple) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-108694171-4	chr5	108693682	108694682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164259)	promoter-TSS (NM_001164259)	-47.0	NM_001164259	116701.0	Mm.35691	NM_054071	ENSMUSG00000008090	Fgfrl1	FGFR5|FGFR5beta|FGFR5gamma	fibroblast growth factor receptor-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8689047-4	chr11	8688536	8689536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24501.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	175.0	364.0	342.0	170.5	438.5	277.0
Merged-chr7-101547902-4	chr7	101547378	101548378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	7924.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	138.0	173.5	116.5	69.5	143.5	119.0
Merged-chr5-139364789-4	chr5	139364246	139365246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	4999.0	NR_029768	723898.0		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127480594-4	chr7	127480091	127481091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-4630.0	NM_010183	14123.0	Mm.323505	NM_010183	ENSMUSG00000042423	Fbrs	Fbs|Fbs1	fibrosin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56572939-4	chr18	56572468	56573468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019996)	promoter-TSS (NM_019996)	-29.0	NM_001127338	110695.0	Mm.30250	NM_138600	ENSMUSG00000053644	Aldh7a1	Atq1|D18Wsu181e	aldehyde dehydrogenase family 7, member A1	protein-coding	19.5	84.5	37.5	15.0	46.0	28.0
Merged-chr9-107611768-4	chr9	107611266	107612266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2525.0	NM_001291539	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	12.5	24.5	15.5	12.0	55.5	29.0
Merged-chr14-20834313-4	chr14	20833814	20834814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2348.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-108789451-4	chr4	108788949	108789949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-8361.0	NM_001347163	230597.0	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	0.0	6.5	1.0	3.0	8.5	1.0
Merged-chr8-116973043-2	chr8	116972543	116973543	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357255, intron 2 of 2)	intron (NM_001357255, intron 2 of 2)	5610.0	NM_001357254	69528.0	Mm.272846	NM_027103	ENSMUSG00000031847	1700030J22Rik	-	RIKEN cDNA 1700030J22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81324089-2	chr7	81323589	81324589	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008803, exon 18 of 22)	exon (NM_008803, exon 18 of 22)	21145.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-90819124-2	chr6	90818624	90819624	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9001.0	NM_001134384	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61921211-4	chr8	61920710	61921710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6877.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	16.5	37.5	30.5	21.0	58.5	41.5
Merged-chr3-81989830-2	chr3	81989330	81990330	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1-int|LTR|ERVL-MaLR	-7092.0	NM_021370	58170.0	Mm.88839	NM_021370	ENSMUSG00000028008	Asic5	Accn5|Blinac|Inac	acid-sensing (proton-gated) ion channel family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121571707-4	chr10	121571208	121572208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019786, intron 5 of 20)	intron (NM_019786, intron 5 of 20)	15086.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	3.0	24.0	12.5	11.5	38.0	18.5
Merged-chr5-139404099-4	chr5	139403648	139404648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	-2239.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71446421-7	chr6	71445924	71446924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5787.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73386691-4	chr2	73386200	73387200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190297)	promoter-TSS (NM_001190297)	-220.0	NM_001276444	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3543829-4	chr5	3543344	3544344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042501)	promoter-TSS (NM_001042501)	11.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45266872-4	chr13	45266376	45267376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122866.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	62.0	172.0	168.0	81.5	170.0	121.0
Merged-chr17-23971095-1	chr17	23970595	23971595	+	1000.0	f1_balb.idr	Intergenic	Intergenic	4135.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr1-64374874-4	chr1	64374383	64375383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157921.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-22314953-4	chr17	22314432	22315432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357991)	promoter-TSS (NM_001357991)	-90.0	NM_001357991	631624.0	Mm.440794	NM_001357991		Gm7072	EG631624	predicted gene 7072	protein-coding	47.0	94.5	72.0	10.0	14.0	22.0
Merged-chr8-13673864-2	chr8	13673364	13674364	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	3723.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132808285-4	chr4	132807804	132808804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11940.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8995001-5	chr15	8994442	8995442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198024, intron 1 of 13)	intron (NM_198024, intron 1 of 13)	26993.0	NM_198024	223332.0	Mm.321371	NM_198024	ENSMUSG00000048424	Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113580079-4	chr13	113579582	113580582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38482.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-123430001-4	chr7	123429498	123430498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355050, intron 6 of 6)	intron (NM_001355050, intron 6 of 6)	22181.0	NM_001355050	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18027593-4	chr2	18027082	18028082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028376, exon 2 of 2)	non-coding (NR_028376, exon 2 of 2)	333.0	NR_028378	100034739.0	Mm.401643	NR_028378		Gm17762	-	predicted gene, 17762	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14642639-4	chr8	14642141	14643141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-245895.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	2.5	6.0	15.5	13.0	6.5	7.0
Merged-chr11-3331272-2	chr11	3330772	3331772	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178149, intron 1 of 5)	intron (NM_178149, intron 1 of 5)	541.0	NM_178149	216505.0	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-13666347-4	chr13	13665823	13666823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010748, intron 18 of 52)	intron (NM_010748, intron 18 of 52)	75914.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-91083538-1	chr10	91083038	91084038	+	1000.0	f0_balb.idr	promoter-TSS (NM_009684)	promoter-TSS (NM_009684)	499.0	NM_026166	67454.0	Mm.252843	NM_026166	ENSMUSG00000019975	Ikbip	1200009F10Rik|1700023M03Rik|D18354|Ikip	IKBKB interacting protein	protein-coding	39.5	60.0	51.5	37.0	57.0	34.5
Merged-chr1-132417454-4	chr1	132416957	132417957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172516)	promoter-TSS (NM_172516)	4.0	NM_172516	213452.0	Mm.257120	NM_172516	ENSMUSG00000042046	Dstyk	A930019K20Rik|C430014H23Rik|C820013G01|Ripk5	dual serine/threonine and tyrosine protein kinase	protein-coding	0.0	10.5	4.5	0.5	12.5	7.5
Merged-chr13-43795684-4	chr13	43795210	43796210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	10598.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80347967-1	chr7	80347467	80348467	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	4830.0	NM_026812	68695.0	Mm.21171	NM_026812	ENSMUSG00000030532	Hddc3	1110033O09Rik|C86475|MESH1	HD domain containing 3	protein-coding	1.0	4.5	1.5	13.5	12.0	9.0
Merged-chr7-67222539-4	chr7	67222040	67223040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175215)	promoter-TSS (NM_175215)	-4.0	NR_131043	76628.0	Mm.384589	NR_131043	ENSMUSG00000097527	1700112J16Rik	-	RIKEN cDNA 1700112J16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123828714-2	chr5	123828214	123829214	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	36802.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	2.5	0.0	0.0	5.0	0.0	0.0
Merged-chr7-66689127-2	chr7	66688627	66689627	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001191001)	promoter-TSS (NM_001191001)	434.0	NM_080443	117589.0	Mm.34785	NM_080443	ENSMUSG00000030509	Asb7	AI449039|Asb-7|D030055C23Rik	ankyrin repeat and SOCS box-containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73611009-4	chr12	73610493	73611493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	26197.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.5	29.0	13.5	3.5	42.5	29.5
Merged-chr4-9631826-4	chr4	9631318	9632318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177856, intron 4 of 4)	intron (NM_001177856, intron 4 of 4)	11899.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	51.5	63.0	32.5	22.0	63.0	50.0
Merged-chr10-98914415-4	chr10	98913888	98914888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026482)	promoter-TSS (NM_026482)	-254.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-45851944-4	chr11	45851483	45852483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346760)	promoter-TSS (NM_001346760)	19.0	NM_001045520	216705.0	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	53.5	126.0	112.5	76.0	94.0	114.5
Merged-chr1-172349843-1	chr1	172349343	172350343	+	1000.0	f1_c57bl6.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	8633.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	7.5	4.0	4.5	11.0	0.0	4.5
Merged-chr11-55459548-2	chr11	55459048	55460048	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 1 of 3)	intron (NM_009720, intron 1 of 3)	1660.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-157448738-2	chr1	157448292	157449292	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9776.0	NM_001356418	226527.0	Mm.215960	NM_001033284	ENSMUSG00000033488	Cryzl2	-	crystallin zeta like 2	protein-coding	4.0	3.0	4.0	6.5	6.5	10.0
Merged-chr7-16248899-1	chr7	16248399	16249399	+	1000.0	f1_balb.idr	exon (NM_007577, exon 3 of 3)	exon (NM_007577, exon 3 of 3)	-4745.0	NM_176912	319430.0	Mm.239570	NM_176912	ENSMUSG00000074361	C5ar2	C5L2|E030029A11Rik|Gpr77	complement component 5a receptor 2	protein-coding	3.0	0.0	5.0	9.0	6.0	11.0
Merged-chr3-87376335-4	chr3	87375843	87376843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310545)	promoter-TSS (NM_001310545)	-44.0	NM_001310545	229499.0	Mm.255203	NM_153090	ENSMUSG00000059994	Fcrl1	A230020G22Rik|Bxmas1|Bxmh1|Bxmh1b|Fcrh1|Fcrh1l|Fcrh1s|Ifgp1	Fc receptor-like 1	protein-coding	25.5	33.0	42.5	14.5	20.0	24.5
Merged-chr1-118459112-4	chr1	118458617	118459617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027901, exon 1 of 1)	non-coding (NR_027901, exon 1 of 1)	148.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	1.0	22.0	4.5	6.0	15.5	16.5
Merged-chr5-148959235-2	chr5	148958735	148959735	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8985.0	NR_040686	71473.0	Mm.90306	NR_040686	ENSMUSG00000079069	8430423G03Rik	-	RIKEN cDNA 8430423G03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86849018-1	chr6	86848518	86849518	+	1000.0	f0_c57.idr	promoter-TSS (NM_177762)	promoter-TSS (NM_177762)	422.0	NR_028298	67170.0	Mm.119489	NR_028298	ENSMUSG00000100164	2610306M01Rik	-	RIKEN cDNA 2610306M01 gene	ncRNA	25.0	41.0	66.0	23.5	59.5	57.5
Merged-chr3-69126549-4	chr3	69126077	69127077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008467, intron 1 of 16)	CpG	515.0	NM_008467	16649.0	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	96.0	215.0	174.0	51.0	181.0	148.0
Merged-chr15-76378435-2	chr15	76377935	76378935	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2078.0	NM_175457	223658.0	Mm.123240	NM_175457	ENSMUSG00000022558	Mroh1	D330001F17Rik|Heatr7a	maestro heat-like repeat family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51342686-4	chr3	51342154	51343154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2010.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-79181553-3	chr18	79181051	79182051	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-72160.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165856215-4	chr2	165855705	165856705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	1968.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-63051274-4	chr11	63050793	63051793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10366.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117914101-4	chr2	117913608	117914608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	92180.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	4.5	4.5	2.0	0.0	9.0	0.5
Merged-chr2-166805503-4	chr2	166804996	166805996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085495)	promoter-TSS (NM_001085495)	-85.0	NM_001085495	99371.0	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21463483-4	chr9	21462960	21463960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 2 of 19)	intron (NM_001357721, intron 2 of 19)	33104.0	NR_029585	387194.0		NR_029585	ENSMUSG00000065547	Mir199a-1	Mirn199|Mirn199a-1|mir-199a-1	microRNA 199a-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6840857-6	chr19	6840461	6841461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019924)	promoter-TSS (NM_019924)	-334.0	NM_019924	56613.0	Mm.20914	NM_019924	ENSMUSG00000024952	Rps6ka4	1110069D02Rik|90kDa|AI848992|Msk2|mMSK2	ribosomal protein S6 kinase, polypeptide 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6267121-4	chr15	6266640	6267640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-32649.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-19417463-4	chr14	19416996	19417996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	185091.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70852927-5	chr17	70852390	70853390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164074, intron 1 of 2)	CpG	642.0	NM_001164074	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-27023127-4	chr8	27022617	27023617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153592)	promoter-TSS (NM_153592)	-682.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130081432-4	chr5	130080928	130081928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130476, intron 1 of 5)	intron (NM_001130476, intron 1 of 5)	2058.0	NM_001130476	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-63114543-6	chr1	63114035	63115035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081436)	promoter-TSS (NM_001081436)	64.0	NR_045915	100380944.0	Mm.392955	NR_045914	ENSMUSG00000084799	Ino80dos	Gm11602	INO80 complex subunit D, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56220025-4	chr17	56219529	56220529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1140.0	NM_172624	224897.0	Mm.205535	NM_172624	ENSMUSG00000001229	Dpp9	6430584G11Rik|A330078I11|DPP IX|DPRP2	dipeptidylpeptidase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66135836-4	chr7	66135336	66136336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081163, intron 2 of 2)	intron (NM_001081163, intron 2 of 2)	26321.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-82699105-4	chr10	82698601	82699601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081218)	promoter-TSS (NM_001081218)	94.0	NM_001081218	67933.0	Mm.127405	NM_026462	ENSMUSG00000020246	Hcfc2	1700129L13Rik|AU019838|fkls	host cell factor C2	protein-coding	1.0	5.0	3.0	2.0	3.5	5.0
Merged-chr13-69383470-3	chr13	69382953	69383953	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150411.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	56.0	99.0	102.0	10.5	13.5	14.0
Merged-chr6-86396142-4	chr6	86395659	86396659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025823, intron 1 of 5)	intron (NM_025823, intron 1 of 5)	991.0	NM_001355687	66881.0	Mm.30849	NM_025823	ENSMUSG00000029998	Pcyox1	1200015P13Rik|AI115532|AI448340|PCL1|Pcly	prenylcysteine oxidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106372024-4	chr9	106371530	106372530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153459, intron 2 of 2)	intron (NM_153459, intron 2 of 2)	3398.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	40.5	82.5	46.5	31.5	31.0	37.5
Merged-chr17-71178708-3	chr17	71178193	71179193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-4839.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	54.5	118.0	104.5	45.0	123.5	118.5
Merged-chr11-96980193-2	chr11	96979693	96980693	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2505.0	NM_001080964	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55294238-4	chr19	55293738	55294738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027976, exon 19 of 22)	exon (NM_027976, exon 19 of 22)	21798.0	NM_001360595	66980.0	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6	zinc finger, DHHC domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141512352-3	chr4	141511858	141512858	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347235, intron 3 of 14)	intron (NM_001347235, intron 3 of 14)	26239.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	58.0	69.5	61.0	5.5	3.5	3.0
Merged-chr11-119428477-1	chr11	119427977	119428977	+	1000.0	f1_c57bl6.idr	Intergenic	B4A|SINE|B4	38005.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.5	0.0	1.5	0.0	0.0	0.0
Merged-chr19-38054889-4	chr19	38054389	38055389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360663)	promoter-TSS (NM_001360663)	-95.0	NM_028293	74107.0	Mm.9916	NM_028293	ENSMUSG00000024989	Cep55	1200008O12Rik|2700032M20Rik	centrosomal protein 55	protein-coding	23.5	74.0	49.0	19.5	41.0	46.0
Merged-chr11-53567397-4	chr11	53566917	53567917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290805)	promoter-TSS (NM_001290805)	48.0	NM_001290806	16568.0	Mm.88694	NM_008443	ENSMUSG00000018395	Kif3a	Kif3|Kifl|Kns3	kinesin family member 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127607261-4	chr10	127606762	127607762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 4 of 88)	L1ME3G|LINE|L1	13886.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	30.0	94.5	46.0	35.0	66.0	44.5
Merged-chr16-87713152-4	chr16	87712623	87713623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	14169.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127027379-4	chr7	127026881	127027881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010772)	promoter-TSS (NM_010772)	-902.0	NM_010772	17188.0	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-10429838-4	chr10	10429357	10430357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 9 of 36)	intron (NM_001127353, intron 9 of 36)	42457.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25007975-4	chr8	25007481	25008481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270996, intron 1 of 21)	intron (NM_001270996, intron 1 of 21)	8941.0	NM_001270996	11502.0	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	19.0	27.5	10.0	13.5	37.5	36.5
Merged-chr2-122146843-4	chr2	122146359	122147359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009735)	promoter-TSS (NM_009735)	-828.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	76.5	171.0	115.0	52.5	156.5	116.5
Merged-chr7-73561991-2	chr7	73561491	73562491	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3596.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10676857-2	chr16	10676357	10677357	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177562, intron 18 of 22)	intron (NM_177562, intron 18 of 22)	108679.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5648886-4	chr19	5648358	5649358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009045)	TTS (NM_009045)	11368.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	47.5	102.5	103.0	64.0	150.5	111.0
Merged-chr2-3519993-4	chr2	3519492	3520492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177647, intron 2 of 3)	RMER10A|LTR|ERVL	6927.0	NM_177647	227526.0	Mm.211455	NM_177647	ENSMUSG00000039496	Cdnf	9330140G23|Armetl1	cerebral dopamine neurotrophic factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5107082-4	chr19	5106584	5107584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029576)	promoter-TSS (NM_029576)	-88.0	NM_029576	76308.0	Mm.182563	NM_029576	ENSMUSG00000024870	Rab1b	1110011F09Rik	RAB1B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-129534363-2	chr3	129533863	129534863	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_130450, intron 2 of 4)	intron (NM_130450, intron 2 of 4)	-1975.0	NR_153368	102639747.0	Mm.393257	NR_153368		Gm35986	-	predicted gene, 35986	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-14012568-4	chr14	14012091	14013091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139227)	promoter-TSS (NM_139227)	100.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32788032-3	chr17	32787516	32788516	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346705)	promoter-TSS (NM_001346705)	271.0	NM_172458	208292.0	Mm.38813	NM_172458	ENSMUSG00000024298	Zfp871	4732483N19|9030612M13Rik|AI118577|AI265322|mKIAA3006	zinc finger protein 871	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30645816-4	chr13	30645336	30646336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-14223.0	NM_001037955	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-104550607-4	chr11	104550126	104551126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285990)	promoter-TSS (NM_001285990)	-6.0	NM_001285988	217232.0	Mm.89845	NM_145436	ENSMUSG00000020687	Cdc27	AI452358|APC3|BC023187	cell division cycle 27	protein-coding	6.0	4.0	6.0	7.0	4.0	2.5
Merged-chr2-170317005-4	chr2	170316495	170317495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39366.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88828190-4	chr6	88827706	88828706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011844, exon 8 of 8)	3' UTR (NM_011844, exon 8 of 8)	13729.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81083494-4	chr15	81082984	81083984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	21563.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	75.0	297.0	178.0	152.0	278.5	155.0
Merged-chr4-63544751-4	chr4	63544232	63545232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024173)	promoter-TSS (NM_024173)	-33.0	NM_024173	66290.0	Mm.371615	NM_024173	ENSMUSG00000039105	Atp6v1g1	1810024D14Rik|AA960677|ATP6J|Atp6g1|VAG1|Vma10	ATPase, H+ transporting, lysosomal V1 subunit G1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75659099-4	chr2	75658599	75659599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198090)	promoter-TSS (NM_198090)	-160.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	82.5	186.0	176.0	130.5	173.0	145.5
Merged-chr18-4803458-4	chr18	4802905	4803905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9081.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	0.5	8.5	0.5	6.0	3.5	1.5
Merged-chr8-70515419-2	chr8	70514919	70515919	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029366, exon 4 of 5)	exon (NM_029366, exon 4 of 5)	4933.0	NR_151735	78183.0	Mm.297372	NR_151735		4930522P08Rik	-	RIKEN cDNA 4930522P08 gene	ncRNA	0.0	0.0	0.0	0.0	3.0	6.0
Merged-chr7-35555422-4	chr7	35554897	35555897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_033080, exon 1 of 3)	exon (NM_033080, exon 1 of 3)	531.0	NM_033080	110959.0	Mm.410206	NM_033080	ENSMUSG00000034875	Nudt19	D7Rp2|D7Rp2-r|D7Rp2-s|D7Rp2e|RP2-r|RP2-s	nudix (nucleoside diphosphate linked moiety X)-type motif 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126131928-4	chr4	126131487	126132487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 6 of 10)	intron (NM_028800, intron 6 of 10)	-16016.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	50.5	127.5	52.5	50.0	118.0	52.5
Merged-chr12-84252979-2	chr12	84252479	84253479	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16E2|LTR|ERVL	-32317.0	NM_029880	77219.0	Mm.246127	NM_029880	ENSMUSG00000072946	Ptgr2	1810016I24Rik|9130222H03Rik|9630002F03Rik|AI838763|B830026H24Rik|PGR-2|PRG-2|Zadh1	prostaglandin reductase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82016268-4	chr15	82015764	82016764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134095)	promoter-TSS (NM_134095)	-44.0	NM_001356541	28075.0	Mm.474453	NM_134095	ENSMUSG00000022472	Desi1	AI427858|AI850401|D15Wsu75e|DeSI-1|Fam152b|Pppde2	desumoylating isopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-124802509-4	chr4	124802024	124803024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008636)	promoter-TSS (NM_008636)	-25.0	NM_008636	17764.0	Mm.272397	NM_008636	ENSMUSG00000028890	Mtf1	MTF-1|Thyls	metal response element binding transcription factor 1	protein-coding	37.5	72.5	37.0	39.0	70.0	56.5
Merged-chr4-129783021-4	chr4	129782542	129783542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	-37437.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	68.0	152.5	131.0	75.5	234.5	141.5
Merged-chr7-116597118-4	chr7	116596618	116597618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92749.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-26361903-4	chr15	26361414	26362414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310774, intron 2 of 2)	intron (NM_001310774, intron 2 of 2)	52866.0	NM_001310774	211147.0	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43867410-4	chr5	43866895	43867895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	-1414.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	260.0	538.5	389.0	220.0	492.5	341.0
Merged-chr4-3510827-4	chr4	3510324	3511324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26266.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83055073-4	chr8	83054543	83055543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 6 of 6)	intron (NM_177378, intron 6 of 6)	-110309.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	45.0	109.0	87.5	82.0	67.0	96.0
Merged-chr14-55794063-4	chr14	55793552	55794552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5195.0	NM_001164108	56532.0	Mm.46612	NM_019955	ENSMUSG00000022221	Ripk3	2610528K09Rik|AW107945|Rip3	receptor-interacting serine-threonine kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122148730-4	chr2	122148236	122149236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009735, intron 1 of 3)	intron (NM_009735, intron 1 of 3)	1049.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	187.5	573.5	281.5	156.5	442.0	291.5
Merged-chr19-41848295-4	chr19	41847804	41848804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177603)	promoter-TSS (NM_177603)	-172.0	NM_177603	212398.0	Mm.222723	NM_177603	ENSMUSG00000047604	Frat2	-	frequently rearranged in advanced T cell lymphomas 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62980426-1	chr9	62979926	62980926	+	1000.0	f0_c57.idr	intron (NM_019663, intron 1 of 13)	CpG	453.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-123130320-2	chr7	123129820	123130820	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144925, intron 2 of 23)	intron (NM_144925, intron 2 of 23)	6435.0	NM_144925	233833.0	Mm.102305	NM_144925	ENSMUSG00000052707	Tnrc6a	2010321I05Rik|3110054G10Rik|AW557223|CAGH26|D130023A07Rik|GW182|Tnrc6	trinucleotide repeat containing 6a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72407336-4	chr6	72406838	72407838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6970.0	NM_019802	56316.0	Mm.19937	NM_019802	ENSMUSG00000053460	Ggcx	-	gamma-glutamyl carboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-103208027-4	chr9	103207536	103208536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133977)	TTS (NM_133977)	-5971.0	NM_009275	20818.0	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	12.5	13.0	19.5	7.0	32.5	17.5
Merged-chr1-180568913-4	chr1	180568405	180569405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007415)	promoter-TSS (NM_007415)	14.0	NM_007415	11545.0	Mm.277779	NM_007415	ENSMUSG00000026496	Parp1	5830444G22Rik|AI893648|ARTD1|Adprp|Adprt1|C80510|PARP|PPOL|msPARP|parp-1|sPARP-1	poly (ADP-ribose) polymerase family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57627720-2	chr16	57627220	57628220	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007739, exon 4 of 4)	exon (NM_007739, exon 4 of 4)	-20853.0	NM_025599	66497.0	Mm.425976	NM_025599	ENSMUSG00000022748	Cmss1	1110001A06Rik|2610528E23Rik|4930572F24Rik|AV099812|AV122629	cms small ribosomal subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151818826-2	chr1	151818326	151819326	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001311166, exon 20 of 20)	3' UTR (NM_001311166, exon 20 of 20)	63452.0	NM_001311166	66967.0	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95712170-4	chr11	95711624	95712624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045780, intron 1 of 1)	intron (NR_045780, intron 1 of 1)	630.0	NR_045780	432396.0	Mm.426849	NR_045780	ENSMUSG00000086191	Zfp652os	1110035M17Rik	zinc finger protein 652, opposite strand	ncRNA	74.5	190.0	95.5	68.0	194.0	152.0
Merged-chr17-50438667-1	chr17	50438167	50439167	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-70880.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	3.5	17.5	17.0	8.5	27.5	24.0
Merged-chr2-32961704-4	chr2	32961201	32962201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009076)	promoter-TSS (NM_009076)	-11.0	NM_009076	269261.0	Mm.250030	NM_009076	ENSMUSG00000038900	Rpl12	E430018F03	ribosomal protein L12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21144824-4	chr19	21144345	21145345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40135.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42278177-2	chr10	42277678	42278678	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	CpG-1005	-1436.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24614582-4	chr13	24614111	24615111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286101)	promoter-TSS (NM_001286101)	5.0	NM_178658	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-95698231-1	chr7	95697731	95698731	+	1000.0	f0_balb.idr	Intergenic	B4A|SINE|B4	-473013.0	NM_001310762	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	8.0	11.0	3.0	6.0	6.5	5.5
Merged-chr13-114818192-4	chr13	114817640	114818640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013826)	promoter-TSS (NM_013826)	-97.0	NM_013826	17434.0	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-96997510-4	chr5	96997007	96998007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080708)	promoter-TSS (NM_080708)	-182.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71476665-5	chr8	71476172	71477172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001294259)	TTS (NM_001294259)	7478.0	NR_122114	66498.0	Mm.260360	NM_025600	ENSMUSG00000074247	Dda1	1500034J01Rik|1700095J19Rik|R74921	DET1 and DDB1 associated 1	protein-coding	3.0	15.0	6.0	10.0	13.0	12.0
Merged-chr15-25441199-4	chr15	25440713	25441713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027376, intron 1 of 1)	intron (NR_027376, intron 1 of 1)	27021.0	NR_027376	432939.0	Mm.146555	NM_001013791		Gm5468	100040583|EG432939	predicted gene 5468	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131160146-4	chr2	131159664	131160664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026091)	promoter-TSS (NM_026091)	-83.0	NM_026091	67326.0	Mm.27711	NM_026091	ENSMUSG00000027327	1700037H04Rik	-	RIKEN cDNA 1700037H04 gene	protein-coding	84.0	133.5	139.0	39.0	166.5	116.5
Merged-chr8-84201633-4	chr8	84201095	84202095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6923.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	222.0	481.5	376.5	206.5	502.0	376.5
Merged-chr3-148895919-1	chr3	148895419	148896419	+	1000.0	f0_balb.idr	intron (NM_001081298, intron 1 of 23)	intron (NM_001081298, intron 1 of 23)	58716.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	1.0	3.0	5.5	9.5	4.5	3.5
Merged-chr2-103966550-2	chr2	103966050	103967050	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142337, intron 1 of 3)	MIRc|SINE|MIR	-3007.0	NM_001142336	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94631364-2	chr11	94630864	94631864	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133807, intron 1 of 6)	intron (NM_133807, intron 1 of 6)	1540.0	NM_133807	98238.0	Mm.172720	NM_133807	ENSMUSG00000020869	Lrrc59	AA959742|C78668	leucine rich repeat containing 59	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74493330-4	chr11	74492842	74493842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	96816.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-108425139-4	chr11	108424634	108425634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029606)	promoter-TSS (NM_029606)	-132.0	NM_029606	76380.0	Mm.344071	NM_029586	ENSMUSG00000020728	Cep112	1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco	centrosomal protein 112	protein-coding	7.5	15.5	11.0	1.5	6.5	3.5
Merged-chr2-32361682-4	chr2	32361188	32362188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1322.0	NM_001252538	68379.0	Mm.170508	NM_028412	ENSMUSG00000039205	Ciz1	0610038H21Rik|2900056O04Rik|LSFR1|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118622296-4	chr10	118621808	118622808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-65783.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	16.5	16.5	23.0	7.0	8.0	14.5
Merged-chr5-76303974-4	chr5	76303474	76304474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305222)	promoter-TSS (NM_001305222)	-472.0	NM_001305222	12753.0	Mm.3552	NM_007715	ENSMUSG00000029238	Clock	5330400M04Rik|KAT13D	circadian locomotor output cycles kaput	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-137437576-4	chr7	137437063	137438063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023140)	promoter-TSS (NM_023140)	-10.0	NM_001348093	30926.0	Mm.267692	NM_023140	ENSMUSG00000031068	Glrx3	PICOT|Txnl2	glutaredoxin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120479466-4	chr6	120478983	120479983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 11 of 12)	intron (NM_008359, intron 11 of 12)	14324.0	NM_033567	94047.0	Mm.23088	NM_033567	ENSMUSG00000094626	Tmem121b	AW048664|Cecr6	transmembrane protein 121B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-57124184-4	chr2	57123686	57124686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001139509)	promoter-TSS (NM_001139509)	-183.0	NM_001139509	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-35729314-4	chr5	35728802	35729802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194344)	promoter-TSS (NM_194344)	-26.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118550224-2	chr2	118549723	118550723	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138313)	promoter-TSS (NM_138313)	-537.0	NM_138313	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	28.0	68.0	50.5	21.5	84.5	54.5
Merged-chr5-36747974-2	chr5	36747474	36748474	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133724, exon 1 of 1)	3' UTR (NM_133724, exon 1 of 1)	705.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98785905-4	chr11	98785420	98786420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9596.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-117223296-4	chr13	117222806	117223806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010330, intron 1 of 8)	MIR|SINE|MIR	2733.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-100440451-7	chr9	100439944	100440944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46029.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	3.5	12.5	5.0	11.5	20.5	10.5
Merged-chr11-103412699-4	chr11	103412160	103413160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183034)	promoter-TSS (NM_183034)	4.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	57.0	171.0	104.0	52.5	173.5	134.5
Merged-chr11-98775422-4	chr11	98774924	98775924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145434)	promoter-TSS (NM_145434)	-47.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9129068-4	chr13	9128556	9129556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 3 of 17)	intron (NM_172585, intron 3 of 17)	35175.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45050023-4	chr2	45049524	45050524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-26847.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63399309-7	chr4	63398780	63399780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 1 of 21)	intron (NM_001045514, intron 1 of 21)	-1040.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87756332-3	chr1	87755869	87756869	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029846, intron 1 of 17)	CpG	358.0	NM_001205392	77040.0	Mm.272972	NM_029846	ENSMUSG00000026289	Atg16l1	1500009K01Rik|Apg16l|Atg16l|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62291327-4	chr4	62290837	62291837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290518)	promoter-TSS (NM_001290518)	-210.0	NM_001290518	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-123330754-4	chr7	123330231	123331231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 2 of 19)	intron (NM_001316713, intron 2 of 19)	39184.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109376645-2	chr11	109376145	109377145	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010303, intron 2 of 3)	intron (NM_010303, intron 2 of 3)	-12991.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	0.5	0.0	1.0	1.0	1.5	0.0
Merged-chr7-127875779-4	chr7	127875271	127876271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362191)	promoter-TSS (NM_001362191)	-129.0	NM_001362191	244219.0	Mm.207872	NM_146259	ENSMUSG00000049728	Zfp668	BC030314|E130018B19Rik|Znf668	zinc finger protein 668	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83722669-4	chr7	83722148	83723148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001360087, exon 2 of 19)	exon (NM_001360087, exon 2 of 19)	9750.0	NM_001360087	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	1.0	29.0	10.0	3.0	2.5	9.0
Merged-chr7-116409670-4	chr7	116409187	116410187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011083, intron 2 of 32)	intron (NM_011083, intron 2 of 32)	33771.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74395996-2	chr1	74395496	74396496	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153088, exon 7 of 7)	3' UTR (NM_153088, exon 7 of 7)	1686.0	NR_029743	387219.0		NR_029743	ENSMUSG00000065468	Mir26b	Mirn26b|mir-26b|mmu-mir-26b	microRNA 26b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76587547-4	chr11	76587039	76588039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9800.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	45.0	88.5	52.0	34.5	66.5	60.0
Merged-chr6-67158960-4	chr6	67158471	67159471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108008.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97163233-4	chr15	97162724	97163724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155278, intron 2 of 3)	MLT1A0|LTR|ERVL-MaLR	4020.0	NR_155278	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108819662-2	chr9	108819162	108820162	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-6383.0	NM_001359573	107934.0	Mm.39945	NM_080437	ENSMUSG00000023473	Celsr3	Adgrc3|Fmi1|flamingo|mKIAA0812	cadherin, EGF LAG seven-pass G-type receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142387426-2	chr7	142386926	142387926	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009983, intron 1 of 8)	intron (NM_009983, intron 1 of 8)	444.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	88.5	179.5	197.0	86.0	177.0	197.5
Merged-chr7-16406246-4	chr7	16405781	16406781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198631, intron 1 of 13)	intron (NM_198631, intron 1 of 13)	5085.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117367582-4	chr8	117367051	117368051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	L2b|LINE|L2	18381.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98878464-4	chr10	98877953	98878953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-36189.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25482577-4	chr9	25482089	25483089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026189, exon 2 of 8)	exon (NM_026189, exon 2 of 8)	992.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-6331334-4	chr7	6330835	6331835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033249)	promoter-TSS (NM_001033249)	-901.0	NM_001033249	213011.0	Mm.333558	NM_001033249	ENSMUSG00000030443	Zfp583	BC056221|Znf583	zinc finger protein 583	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95228753-4	chr3	95228255	95229255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019914)	promoter-TSS (NM_019914)	-78.0	NM_019914	56772.0	Mm.331208	NM_019914	ENSMUSG00000053192	Mllt11	AI839562|Af1q|Zfp692	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-17410927-4	chr14	17410385	17411385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-250075.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80256154-4	chr18	80255668	80256668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164424)	promoter-TSS (NM_001164424)	-58.0	NM_001164424	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53147186-2	chr4	53146686	53147686	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	12709.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	3.0	6.0	2.5	0.0	0.0	1.0
Merged-chr10-78364258-4	chr10	78363769	78364769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12569.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144717007-2	chr3	144716507	144717507	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 1 of 10)	intron (NM_001282037, intron 1 of 10)	3328.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-75236461-4	chr1	75235957	75236957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159885)	promoter-TSS (NM_001159885)	34.0	NM_178055	56812.0	Mm.489660	NM_020266	ENSMUSG00000026203	Dnajb2	2700059H22Rik|Dnajb10|Hsj1|mDj8	DnaJ heat shock protein family (Hsp40) member B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-33876542-4	chr1	33876004	33877004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 3 of 6)	MIRb|SINE|MIR	31117.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-89404291-4	chr7	89403803	89404803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008055)	promoter-TSS (NM_008055)	-63.0	NM_008055	14366.0	Mm.86755	NM_008055	ENSMUSG00000049791	Fzd4	Fz4	frizzled class receptor 4	protein-coding	0.5	0.0	5.5	0.0	5.5	4.0
Merged-chr17-74528358-4	chr17	74527841	74528841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007566)	promoter-TSS (NM_007566)	46.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112678684-4	chr12	112678135	112679135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001100460)	promoter-TSS (NM_001100460)	-205.0	NM_001100460	382639.0	Mm.11350	NM_001100460	ENSMUSG00000037638	Zbtb42	EG382639|Gm5188|simiRP58	zinc finger and BTB domain containing 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87017234-4	chr3	87016747	87017747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-17907.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	52.5	116.5	84.5	54.5	134.5	97.0
Merged-chr17-36271819-4	chr17	36271321	36272321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178281)	promoter-TSS (NM_178281)	183.0	NM_024468	79263.0	Mm.40624	NM_024468	ENSMUSG00000045409	Trim39	1100001D15Rik|E130103K13Rik|RBCC-B30.2|Rnf23|mKIAA4179|tfp	tripartite motif-containing 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-183979990-4	chr1	183979494	183980494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54004.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25209049-4	chr12	25208551	25209551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79877.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91611426-4	chr16	91610923	91611923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7576.0	NM_001099738	246738.0	Mm.101927	NM_138664	ENSMUSG00000039763	Dnajc28	BC020175|ORF28	DnaJ heat shock protein family (Hsp40) member C28	protein-coding	2.0	5.5	0.5	0.0	2.5	0.0
Merged-chr13-21721952-4	chr13	21721473	21722473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178200)	promoter-TSS (NM_178200)	-71.0	NM_178200	319186.0	Mm.277425	NM_178200	ENSMUSG00000114279	Hist1h2bm	H2b-291b	histone cluster 1, H2bm	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13160398-2	chr8	13159898	13160898	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010684, intron 1 of 8)	B1_Mur2|SINE|Alu	1237.0	NM_010684	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157840743-4	chr2	157840251	157841251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025680, intron 11 of 15)	intron (NM_025680, intron 11 of 15)	-73902.0	NM_198627	277432.0	Mm.441156	NM_198627	ENSMUSG00000037843	Vstm2l	Gm691	V-set and transmembrane domain containing 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38690779-4	chr6	38690274	38691274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27705.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140611202-4	chr5	140610693	140611693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008494, intron 1 of 7)	intron (NM_008494, intron 1 of 7)	3852.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115628253-4	chr11	115627766	115628766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026071)	promoter-TSS (NM_026071)	29.0	NM_001252394	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-78508467-4	chr8	78507979	78508979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029736)	promoter-TSS (NM_029736)	89.0	NM_001358975	19656.0	Mm.24718	NM_009033	ENSMUSG00000037070	Rbmxl1	Hnrpg|Rbmx|Rbmxrt	RNA binding motif protein, X-linked like-1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152736226-4	chr2	152735707	152736707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010495)	promoter-TSS (NM_010495)	-44.0	NM_010495	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	6.0	19.5	6.5	10.0	11.5	23.0
Merged-chr3-95281386-2	chr3	95280886	95281886	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173347, intron 1 of 7)	CpG	690.0	NM_173347	229589.0	Mm.14155	NM_173347	ENSMUSG00000015711	Prune1	9230112O05Rik|C130058A12|DRES-17|HTCD37|PRUNEM1|Prune|Prune-M1	prune exopolyphosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3895232-4	chr11	3894744	3895744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026150)	promoter-TSS (NM_026150)	4.0	NM_173745	75219.0	Mm.32588	NM_173745	ENSMUSG00000047205	Dusp18	4930527G07Rik|AI430870|BB028064|DSP18|DUSP20|LMWDSP20	dual specificity phosphatase 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109251980-4	chr3	109251490	109252490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88693.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr8-85432878-4	chr8	85432373	85433373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025722)	promoter-TSS (NM_025722)	-32.0	NM_025722	66714.0	Mm.272748	NM_025722	ENSMUSG00000036934	4921524J17Rik	-	RIKEN cDNA 4921524J17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-164248913-4	chr1	164248413	164249413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054087)	promoter-TSS (NM_054087)	-133.0	NM_001276455	116914.0	Mm.35444	NM_054087	ENSMUSG00000040918	Slc19a2	AV276020|AW322295|DDA1|THTR1|TRMA|ThTr-1	solute carrier family 19 (thiamine transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59550874-2	chr9	59550374	59551374	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010421, intron 1 of 13)	B4A|SINE|B4	11334.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101658481-4	chr11	101657999	101658999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7042.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35916632-7	chr17	35916164	35917164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163818)	promoter-TSS (NM_001163818)	-224.0	NM_001361454	66973.0	Mm.29484	NM_025878	ENSMUSG00000024436	Mrps18b	2400002C15Rik|MRP-S18-2|S18mt-b	mitochondrial ribosomal protein S18B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-15850096-3	chr3	15849587	15850587	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1600.0	NM_001173459	100038947.0	Mm.330924	NM_001173459	ENSMUSG00000074677	LOC100038947	-	signal-regulatory protein beta 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135353676-3	chr4	135353138	135354138	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130477)	promoter-TSS (NM_001130477)	-424.0	NM_001130477	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166650636-4	chr2	166650129	166651129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	63203.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40757936-4	chr9	40757432	40758432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	-43341.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	42.0	131.0	75.5	17.0	115.5	50.5
Merged-chr8-70212563-7	chr8	70212007	70213007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001007570)	promoter-TSS (NM_001007570)	-226.0	NM_001007570	73095.0	Mm.185413	NM_001007570	ENSMUSG00000002346	Slc25a42	2900084M01Rik	solute carrier family 25, member 42	protein-coding	65.0	125.0	117.0	37.5	133.0	71.5
Merged-chr13-93187998-4	chr13	93187499	93188499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_154997, intron 1 of 15)	intron (NR_154997, intron 1 of 15)	4418.0	NM_001361536	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	12.0	24.5	11.0	13.0	30.0	6.5
Merged-chr11-5787777-4	chr11	5787299	5788299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146308)	promoter-TSS (NM_001146308)	-684.0	NM_001146309	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	41.0	153.5	118.0	43.0	154.5	120.0
Merged-chr2-170130040-2	chr2	170129540	170130540	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159683, intron 2 of 6)	intron (NM_001159683, intron 2 of 6)	1180.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-30995459-3	chr3	30994982	30995982	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008857)	promoter-TSS (NM_008857)	-289.0	NM_008857	18759.0	Mm.291554	NM_008857	ENSMUSG00000037643	Prkci	2310021H13Rik|AI427505|PKClambda|Pkci|Pkcl|Prkcl|aPKClambda|mKIAA4165	protein kinase C, iota	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-105459138-4	chr9	105458611	105459611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359823, intron 7 of 26)	MER47B|DNA|TcMar-Tigger	36022.0	NM_175025	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	15.0	42.5	52.5	12.5	37.0	23.0
Merged-chr16-75909282-4	chr16	75908757	75909757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023380)	promoter-TSS (NM_023380)	9.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4804230-4	chr18	4803730	4804730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8256.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31572654-4	chr2	31572142	31573142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033389)	promoter-TSS (NM_001033389)	-9.0	NM_001033389	320267.0	Mm.207261	NM_001033389	ENSMUSG00000026843	Fubp3	A330051M14Rik|AV006371|FBP3|Marta2	far upstream element (FUSE) binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34047552-2	chr11	34047052	34048052	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 1 of 20)	intron (NM_010696, intron 1 of 20)	624.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31376551-4	chr14	31376060	31377060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 6 of 7)	intron (NM_001347585, intron 6 of 7)	39922.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105732194-4	chr5	105731680	105732680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	CpG	31370.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	18.0	57.0	45.0	30.0	58.5	59.5
Merged-chr7-19693618-4	chr7	19693143	19694143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007469)	promoter-TSS (NM_007469)	-984.0	NM_007469	11812.0	Mm.182440	NM_007469	ENSMUSG00000040564	Apoc1	Apo-CIB|ApoC-IB|apo-CI|apoC-I	apolipoprotein C-I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122284351-4	chr5	122283859	122284859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177242)	promoter-TSS (NM_177242)	-39.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45998402-6	chr19	45997897	45998897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198296)	promoter-TSS (NM_198296)	91.0	NM_198296	71617.0	Mm.210949	NM_198296	ENSMUSG00000039901	9130011E15Rik	AI431055|AW050122	RIKEN cDNA 9130011E15 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52627535-2	chr13	52627035	52628035	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 7 of 13)	B4A|SINE|B4	30653.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-55113594-4	chr15	55113127	55114127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045093)	promoter-TSS (NR_045093)	-45.0	NR_045093	100503794.0	Mm.360519	NR_045093	ENSMUSG00000053749	Gm9920	-	predicted gene 9920	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134619251-4	chr4	134618758	134619758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 2 of 11)	intron (NM_207237, intron 2 of 11)	-51407.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85941115-1	chr12	85940615	85941615	+	1000.0	f0_balb.idr	intron (NM_001347395, intron 28 of 32)	intron (NM_001347395, intron 28 of 32)	116165.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50871416-4	chr15	50870910	50871910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032000, intron 1 of 5)	intron (NM_032000, intron 1 of 5)	17639.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	12.5	41.0	35.5	25.0	56.5	57.0
Merged-chr11-93995261-4	chr11	93994766	93995766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199203)	promoter-TSS (NM_001199203)	-825.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	136.0	390.0	240.0	171.5	334.0	201.0
Merged-chr8-120620449-4	chr8	120619944	120620944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308449, intron 2 of 3)	intron (NM_001308449, intron 2 of 3)	13938.0	NM_197988	68918.0	Mm.473736	NM_197988	ENSMUSG00000043687	1190005I06Rik	-	RIKEN cDNA 1190005I06 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50568134-2	chr9	50567634	50568634	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008360, intron 3 of 7)	B4|SINE|B4	-6866.0	NM_025687	66654.0	Mm.442255	NM_025687	ENSMUSG00000032065	Tex12	5730518K06Rik	testis expressed gene 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70227728-4	chr12	70227221	70228221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045174)	promoter-TSS (NR_045174)	-38.0	NM_133198	110095.0	Mm.256926	NM_133198	ENSMUSG00000021069	Pygl	-	liver glycogen phosphorylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-79465753-2	chr7	79465253	79466253	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360095, intron 1 of 22)	CpG	520.0	NM_001360095	18975.0	Mm.3616	NM_017462	ENSMUSG00000039176	Polg	AA409516|PolgA	polymerase (DNA directed), gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149641773-2	chr4	149641273	149642273	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023051, intron 11 of 18)	intron (NM_023051, intron 11 of 18)	13794.0	NR_105990	102465983.0		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129514512-4	chr4	129514065	129515065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010807, intron 1 of 1)	intron (NM_010807, intron 1 of 1)	984.0	NM_010807	17357.0	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60620768-4	chr13	60620270	60621270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	18559.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31809983-4	chr6	31809479	31810479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143848.0	NR_152155	434003.0	Mm.332979	NR_152155	ENSMUSG00000084973	Gm13848	-	predicted gene 13848	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-73256799-4	chr5	73256273	73257273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028194)	promoter-TSS (NM_028194)	-155.0	NM_028194	72313.0	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	47.0	132.0	75.0	49.5	70.5	79.0
Merged-chr4-109476716-4	chr4	109476253	109477253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013876)	promoter-TSS (NM_013876)	-248.0	NM_013876	29864.0	Mm.392580	NM_013876	ENSMUSG00000028557	Rnf11	-	ring finger protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-103774385-5	chr13	103773804	103774804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001361085, exon 1 of 12)	exon (NM_001361085, exon 1 of 12)	304.0	NM_001361085	218543.0	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding	38.0	132.5	95.0	34.5	99.5	79.0
Merged-chr2-102990449-4	chr2	102989958	102990958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83055.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78194091-4	chr9	78193606	78194606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010357, intron 1 of 6)	B2_Mm2|SINE|B2	2140.0	NM_010357	14860.0	Mm.2662	NM_010357	ENSMUSG00000032348	Gsta4	GST5.7|mGsta4	glutathione S-transferase, alpha 4	protein-coding	9.5	2.0	0.0	5.0	2.0	0.5
Merged-chr6-8259233-4	chr6	8258748	8259748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026632)	promoter-TSS (NM_026632)	-40.0	NM_001302354	100036521.0	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8445495-4	chr15	8445014	8446014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-4777	-1051.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49198958-4	chr13	49198479	49199479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11432.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-117714366-4	chr14	117713870	117714870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011821, intron 4 of 8)	intron (NM_011821, intron 4 of 8)	239477.0	NR_105747	102465148.0		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	12.5	24.0	17.0	1.0	12.0	5.5
Merged-chr6-124805771-4	chr6	124805260	124806260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2901.0	NM_001306051	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14873960-4	chr8	14873457	14874457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14579.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21701679-6	chr5	21701182	21702182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359963)	promoter-TSS (NM_001359963)	-60.0	NM_001359965	242864.0	Mm.153292	NM_178728	ENSMUSG00000044968	Napepld	A530089G06|Mbldc1|NAPE-PLD	N-acyl phosphatidylethanolamine phospholipase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21605160-4	chr10	21604664	21605664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027968, intron 2 of 2)	intron (NR_027968, intron 2 of 2)	12019.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	127.0	262.0	217.0	60.0	140.0	87.0
Merged-chr2-131091546-2	chr2	131091046	131092046	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4781.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	30.0	92.0	55.0	31.0	126.0	72.0
Merged-chr10-127062671-4	chr10	127062170	127063170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009870)	promoter-TSS (NM_009870)	-865.0	NM_009870	12567.0	Mm.6839	NM_009870	ENSMUSG00000006728	Cdk4	Crk3	cyclin-dependent kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80158527-4	chr10	80158024	80159024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_021565)	TTS (NM_021565)	8842.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138192197-4	chr1	138191713	138192713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16908.0	NM_001268286	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30196487-4	chr14	30195971	30196971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 4 of 46)	intron (NM_001083616, intron 4 of 46)	157015.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	2.0	2.0	7.5	0.0	7.5	3.5
Merged-chr2-59346688-4	chr2	59346171	59347171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 17 of 20)	intron (NM_175464, intron 17 of 20)	40011.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102900506-4	chr2	102900059	102901059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	1106.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	198.5	370.0	223.0	127.0	352.0	224.0
Merged-chr5-109556415-2	chr5	109555915	109556915	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310694, intron 4 of 7)	CpG-11313	2578.0	NM_016715	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	41.5	46.0	54.5	11.5	65.0	17.0
Merged-chr16-31066898-4	chr16	31066395	31067395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 1 of 3)	intron (NM_198626, intron 1 of 3)	14537.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	30.5	203.0	53.0	24.0	85.5	46.0
Merged-chr5-117891289-4	chr5	117890775	117891775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 2 of 27)	MER47A|DNA|TcMar-Tigger	24436.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	6.5	6.5	5.0	18.0	12.5	21.0
Merged-chr6-115675922-4	chr6	115675380	115676380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152134)	promoter-TSS (NR_152134)	8.0	NM_001356334	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6291679-7	chr11	6291160	6292160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252282)	promoter-TSS (NM_001252282)	1.0	NM_001361903	18293.0	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	84.0	197.5	129.0	59.5	140.5	104.0
Merged-chr17-25835249-2	chr17	25834749	25835749	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144816, intron 6 of 7)	intron (NM_144816, intron 6 of 7)	1878.0	NM_144816	214951.0	Mm.490018	NM_144816	ENSMUSG00000025735	Rhbdl1	Rhbdl	rhomboid like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-83703373-4	chr12	83702869	83703869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362271, intron 3 of 11)	L1ME2|LINE|L1	14806.0	NM_008943	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-16215540-4	chr9	16215038	16216038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	162693.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72170311-4	chr5	72169810	72170810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2121.0	NM_001356614	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91917934-4	chr16	91917411	91918411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010587, exon 39 of 39)	3' UTR (NM_010587, exon 39 of 39)	13719.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-127447791-4	chr6	127447284	127448284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346513, intron 1 of 5)	intron (NM_001346513, intron 1 of 5)	944.0	NM_001346513	101187.0	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105716925-4	chr4	105716425	105717425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-524288.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78245631-7	chr11	78245093	78246093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009143)	promoter-TSS (NM_009143)	110.0	NM_009297	20926.0	Mm.20755	NM_009297	ENSMUSG00000002052	Supt6	5131400N11Rik|AI132449|SPT6|Supt6h|mKIAA0162	suppressor of Ty 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34287898-4	chr17	34287417	34288417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010378)	promoter-TSS (NM_010378)	-146.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	217.5	592.0	334.0	121.5	443.5	269.0
Merged-chr4-140173529-1	chr4	140173029	140174029	+	1000.0	f1_balb.idr	intron (NM_198610, intron 1 of 9)	intron (NM_198610, intron 1 of 9)	30656.0	NR_153821	102636673.0	Mm.449180	NR_153821		Gm13029	Gm33676	predicted gene 13029	ncRNA	47.0	44.5	29.0	32.0	81.0	51.0
Merged-chr1-72717179-2	chr1	72716679	72717679	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5919.0	NM_009084	19981.0	Mm.21529	NM_009084	ENSMUSG00000046330	Rpl37a	-	ribosomal protein L37a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50705452-4	chr15	50704951	50705951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	B3A|SINE|B2	183598.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99392141-4	chr12	99391652	99392652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 1 of 5)	CpG	57922.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5964229-4	chr19	5963725	5964725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008893)	promoter-TSS (NM_008893)	-19.0	NM_008893	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121837079-4	chr5	121836572	121837572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008507)	promoter-TSS (NM_008507)	-213.0	NM_008507	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20313628-4	chr13	20313190	20314190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 13 of 21)	intron (NM_080288, intron 13 of 21)	-159300.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5099312-4	chr11	5098817	5099817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001283063)	promoter-TSS (NM_001283063)	44.0	NM_177370	279766.0	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-67025066-4	chr11	67024588	67025588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291042)	promoter-TSS (NM_001291042)	-66.0	NM_001291042	338369.0	Mm.128138	NM_177392	ENSMUSG00000050270	Tmem220	-	transmembrane protein 220	protein-coding	0.5	0.5	3.5	0.0	11.0	2.0
Merged-chr9-64703060-4	chr9	64702515	64703515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134399, intron 23 of 24)	intron (NM_001134399, intron 23 of 24)	34741.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20133138-4	chr11	20132640	20133640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20189.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	10.0	9.5	24.5	7.0	54.0	32.0
Merged-chr3-138489544-4	chr3	138489068	138490068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175224)	promoter-TSS (NM_175224)	-186.0	NM_175224	75624.0	Mm.26833	NM_175224	ENSMUSG00000005813	Metap1	1700029C17Rik|AW047992|mKIAA0094	methionyl aminopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128594306-4	chr8	128593811	128594811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-91343.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	17.5	52.5	42.5	40.5	61.5	37.5
Merged-chr1-74368828-2	chr1	74368328	74369328	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033345, exon 10 of 10)	exon (NM_001033345, exon 10 of 10)	-6375.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-17714595-4	chr14	17714043	17715043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 1 of 9)	intron (NM_001113417, intron 1 of 9)	53583.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-36014277-4	chr4	36013768	36014768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166000, intron 7 of 8)	intron (NM_001166000, intron 7 of 8)	-169064.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113596165-4	chr13	113595658	113596658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	22406.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-157947087-4	chr3	157946614	157947614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001359909, exon 1 of 12)	5' UTR (NM_001359909, exon 1 of 12)	114.0	NM_001013806	433667.0	Mm.265806	NM_001013806	ENSMUSG00000039988	Ankrd13c	AI505652|AU022220	ankyrin repeat domain 13c	protein-coding	67.0	166.5	109.0	65.0	160.5	118.5
Merged-chr1-182501028-2	chr1	182500528	182501528	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009794, intron 2 of 20)	intron (NM_009794, intron 2 of 20)	16582.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6465319-3	chr11	6464805	6465805	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10771.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56723473-4	chr19	56722941	56723941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007419, exon 1 of 1)	exon (NM_007419, exon 1 of 1)	1069.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117357691-4	chr5	117357194	117358194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021539, intron 1 of 8)	CpG	389.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	30.5	105.0	97.5	47.5	84.5	82.5
Merged-chr18-14782143-2	chr18	14781641	14782641	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-1104.0	NM_001100449	72504.0	Mm.312233	NM_001100449	ENSMUSG00000054321	Taf4b	105kDa|2610524B04Rik|4932409F03Rik|AW987595|TAFII-105|TAFII105|Taf2c2	TATA-box binding protein associated factor 4b	protein-coding	4.5	3.5	3.5	0.0	5.5	2.0
Merged-chr2-71211737-4	chr2	71211269	71212269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198878)	promoter-TSS (NM_001198878)	63.0	NM_001198876	13427.0	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126262213-4	chr4	126261713	126262713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013718)	promoter-TSS (NM_013718)	-192.0	NM_013718	27096.0	Mm.8392	NM_013718	ENSMUSG00000028847	Trappc3	1110058K12Rik|AI835942|AU019197|Bet3	trafficking protein particle complex 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-41088139-4	chr9	41087656	41088656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	L2b|LINE|L2	-8650.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	26.0	32.5	40.0	17.0	25.5	23.5
Merged-chr7-28765361-4	chr7	28764876	28765876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001306222, intron 1 of 5)	L2a|LINE|L2	1268.0	NM_001306222	18036.0	Mm.220333	NM_010908	ENSMUSG00000030595	Nfkbib	I(Kappa)B(beta)|I-kappa-B-beta|IKB-beta|IKappaBbeta|IkB|IkBb|NF-kappa-BIB|ikB-B	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89393788-4	chr3	89393295	89394295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040404)	promoter-TSS (NR_040404)	-417.0	NM_009565	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34248783-4	chr19	34248280	34249280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007392, intron 3 of 8)	intron (NM_007392, intron 3 of 8)	6593.0	NM_007392	11475.0	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMAalpha|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	11.0	23.0	16.0	2.0	7.5	2.5
Merged-chr7-4228509-4	chr7	4227980	4228980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	-9274.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	34.0	71.5	36.5	26.5	47.5	23.5
Merged-chr17-28218255-2	chr17	28217755	28218755	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027185, intron 3 of 10)	intron (NM_027185, intron 3 of 10)	10477.0	NM_027185	23853.0	Mm.204731	NM_027185	ENSMUSG00000002257	Def6	2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6	differentially expressed in FDCP 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88082000-4	chr3	88081523	88082523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033484)	promoter-TSS (NM_001033484)	-28.0	NM_001033484	404710.0	Mm.331133	NM_001033484	ENSMUSG00000028068	Iqgap3	AI593484|D030034H08	IQ motif containing GTPase activating protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12306750-3	chr15	12306252	12307252	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14744.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45506991-4	chr17	45506481	45507481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198608, exon 1 of 22)	exon (NM_198608, exon 1 of 22)	140.0	NM_198608	224805.0	Mm.329063	NM_198608	ENSMUSG00000023938	Aars2	Aarsl|AlaRS|Gm89	alanyl-tRNA synthetase 2, mitochondrial	protein-coding	0.0	7.0	0.0	0.0	0.0	0.0
Merged-chr2-164936134-4	chr2	164935599	164936599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H1|LTR|ERVL-MaLR	-12120.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	3.0	3.5	0.5	0.0	2.5	1.0
Merged-chr11-46461592-4	chr11	46461076	46462076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134250, intron 3 of 6)	ID_B1|SINE|B4	6645.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	8.0	21.0	13.0	11.0	13.5	14.0
Merged-chr1-135282318-2	chr1	135281818	135282818	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159624, intron 1 of 9)	intron (NM_001159624, intron 1 of 9)	1766.0	NM_145417	215615.0	Mm.291048	NM_145417	ENSMUSG00000041926	Rnpep	-	arginyl aminopeptidase (aminopeptidase B)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-59845926-4	chr5	59845429	59846429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	140073.0	NR_040683	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35065095-4	chr7	35064582	35065582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8516.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3872328-2	chr12	3871828	3872828	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 4 of 22)	intron (NM_007872, intron 4 of 22)	-10084.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27018053-2	chr2	27017553	27018553	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001243240)	TTS (NM_001243240)	8127.0	NM_001243239	381356.0	Mm.150270	NM_029862	ENSMUSG00000015488	Cacfd1	5930434B04Rik|mFwe	calcium channel flower domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167649515-4	chr2	167649080	167650080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145538, intron 2 of 5)	intron (NM_145538, intron 2 of 5)	11964.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-66391780-4	chr8	66391314	66392314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 5 of 7)	intron (NM_175188, intron 5 of 7)	5513.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120749902-4	chr5	120749401	120750401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145227)	promoter-TSS (NM_145227)	-53.0	NM_001347448	246728.0	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88064146-4	chr17	88063639	88064639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081034, intron 1 of 22)	intron (NM_001081034, intron 1 of 22)	793.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	28.0	34.5	66.0	24.5	67.5	58.5
Merged-chr12-102297199-4	chr12	102296706	102297706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161365, intron 1 of 9)	RLTR11A2|LTR|ERVK	13565.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0.0	1.0	0.5	2.5	3.5	1.5
Merged-chr6-54811799-4	chr6	54811292	54812292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5124.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120347963-3	chr11	120347471	120348471	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105900)	promoter-TSS (NR_105900)	524.0	NM_001313923	11465.0	Mm.196173	NM_009609	ENSMUSG00000062825	Actg1	AL023024|Actg|Actl|E51	actin, gamma, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-79756482-2	chr7	79755982	79756982	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037927, intron 5 of 17)	intron (NM_001037927, intron 5 of 17)	13319.0	NM_001037927	626359.0	Mm.387216	NM_001037927	ENSMUSG00000039099	Wdr93	EG626359	WD repeat domain 93	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23803042-4	chr17	23802532	23803532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175229)	promoter-TSS (NM_175229)	-155.0	NM_175229	75956.0	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	193.5	483.0	281.0	148.0	518.5	410.0
Merged-chr2-120578494-4	chr2	120577993	120578993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009222, intron 1 of 7)	intron (NM_009222, intron 1 of 7)	10822.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	34.0	109.0	64.5	45.5	87.5	87.0
Merged-chr3-27207468-2	chr3	27206968	27207968	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	24464.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75192946-4	chr14	75192439	75193439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	-49348.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-82260367-4	chr12	82259867	82260867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 2 of 23)	intron (NM_001167983, intron 2 of 23)	-50982.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-116024535-4	chr5	116024079	116025079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031869)	promoter-TSS (NM_031869)	-151.0	NM_031869	19079.0	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91712292-2	chr6	91711792	91712792	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	28225.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-140778358-4	chr2	140777870	140778870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 3 of 18)	intron (NM_001013802, intron 3 of 18)	-106894.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96975018-4	chr11	96974515	96975515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030220, intron 1 of 6)	intron (NM_030220, intron 1 of 6)	2673.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87552585-4	chr6	87552096	87553096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19337.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.0	6.0	12.5	3.0	19.5	2.5
Merged-chr11-94707835-4	chr11	94707346	94708346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-3347.0	NM_001007584	432589.0	Mm.342314	NM_001007584	ENSMUSG00000056008	Gm11541	-	predicted gene 11541	protein-coding	4.5	9.0	4.0	5.5	2.0	2.5
Merged-chr17-13867631-4	chr17	13867117	13868117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151731, intron 22 of 33)	intron (NR_151731, intron 22 of 33)	-80756.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91617397-4	chr6	91616880	91617880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	-66687.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-87415940-4	chr14	87415441	87416441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172605)	promoter-TSS (NM_172605)	-642.0	NM_172605	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	3.5	19.5	19.0	9.0	15.5	5.0
Merged-chr13-49148085-2	chr13	49147585	49148585	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_029361, exon 1 of 28)	5' UTR (NM_029361, exon 1 of 28)	243.0	NM_029361	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-63300105-2	chr10	63299605	63300605	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359484, intron 14 of 22)	intron (NM_001359484, intron 14 of 22)	38930.0	NM_019812	93759.0	Mm.351459	NM_019812	ENSMUSG00000020063	Sirt1	AA673258|SIR2L1|Sir2|Sir2a|Sir2alpha	sirtuin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9977962-4	chr19	9977461	9978461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2639.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	54.0	97.5	50.5	32.5	84.0	75.0
Merged-chr8-88696881-4	chr8	88696359	88697359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173369)	promoter-TSS (NM_173369)	-169.0	NM_001128170	74256.0	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	52.0	102.5	65.5	25.5	101.5	86.5
Merged-chr6-38918928-4	chr6	38918419	38919419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011539)	promoter-TSS (NM_011539)	-67.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50470042-4	chr17	50469546	50470546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39501.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62458457-4	chr11	62457935	62458935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039536)	promoter-TSS (NM_001039536)	-25.0	NM_001039536	327942.0	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-72238817-2	chr7	72238317	72239317	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024703, intron 4 of 22)	intron (NM_001024703, intron 4 of 22)	67778.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62190191-4	chr10	62189682	62190682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 5 of 7)	intron (NM_197996, intron 5 of 7)	4045.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112753535-4	chr13	112753039	112754039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47238.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-58531461-4	chr18	58530972	58531972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24768.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	4.5	21.5	20.0	5.0	26.5	18.5
Merged-chr9-50949899-2	chr9	50949399	50950399	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178710, intron 3 of 15)	intron (NM_178710, intron 3 of 15)	59174.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51843495-2	chr13	51842995	51843995	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25A|LTR|ERVK	-3180.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107242812-3	chr11	107242311	107243311	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 6 of 9)	intron (NR_153311, intron 6 of 9)	-53430.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50890078-4	chr15	50889594	50890594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035444)	promoter-TSS (NR_035444)	-53.0	NM_032000	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22872037-4	chr11	22871529	22872529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11693.0	NM_001169114	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-37443254-4	chr2	37442686	37443686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146121)	promoter-TSS (NM_146121)	-65.0	NM_199025	320633.0	Mm.383299	NM_199025	ENSMUSG00000050714	Zbtb26	A630026F21Rik	zinc finger and BTB domain containing 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120816556-4	chr8	120816041	120817041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	77902.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-88960197-4	chr9	88959691	88960691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009742, intron 1 of 1)	intron (NM_009742, intron 1 of 1)	3271.0	NM_009742	12044.0	Mm.425593	NM_009742	ENSMUSG00000102037	Bcl2a1a	A1|BB218357|Bcl2a1|Bfl-1|Hbpa1	B cell leukemia/lymphoma 2 related protein A1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3740321-4	chr12	3739847	3740847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 12 of 17)	intron (NM_001162465, intron 12 of 17)	-66633.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128149805-4	chr10	128149306	128150306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039080, intron 3 of 13)	intron (NM_001039080, intron 3 of 13)	26762.0	NM_019711	56516.0	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69159223-4	chr12	69158725	69159725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009093)	promoter-TSS (NM_009093)	-39.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	250.5	568.5	401.0	218.0	559.5	340.5
Merged-chr14-31160686-4	chr14	31160194	31161194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138672, intron 11 of 68)	intron (NM_138672, intron 11 of 68)	7947.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-53488798-4	chr17	53488288	53489288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025887, intron 2 of 5)	ID_B1|SINE|B4	9554.0	NM_025887	271457.0	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	8.5	33.0	26.0	10.5	63.0	28.0
Merged-chr19-34290454-4	chr19	34289988	34290988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146708)	promoter-TSS (NM_001146708)	-171.0	NM_007987	14102.0	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	10.0	6.5	2.0	3.5	9.0	2.5
Merged-chr2-167740991-4	chr2	167740490	167741490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49813.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128689499-2	chr10	128688999	128689999	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177411, intron 1 of 5)	intron (NM_177411, intron 1 of 5)	6769.0	NM_177411	19344.0	Mm.12815	NM_011229	ENSMUSG00000000711	Rab5b	C030027M18Rik	RAB5B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102587113-2	chr4	102586613	102587613	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177982)	promoter-TSS (NM_001177982)	-445.0	NM_001177982	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.0	5.5	1.0	6.5	12.0	12.5
Merged-chr9-110676814-4	chr9	110676307	110677307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	20304.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-16012451-4	chr13	16011965	16012965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008380, intron 2 of 4)	intron (NM_008380, intron 2 of 4)	614.0	NM_008380	16323.0	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25330265-4	chr12	25329775	25330775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	201101.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	4.0	17.5	15.0	9.0	11.5	7.5
Merged-chr10-94573298-2	chr10	94572798	94573798	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359760, intron 1 of 3)	intron (NM_001359760, intron 1 of 3)	-1959.0	NM_001168684	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9409215-4	chr13	9408709	9409709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	132684.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96697080-4	chr3	96696577	96697577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018812)	promoter-TSS (NM_018812)	1.0	NM_018812	229615.0	Mm.1635	NM_018812	ENSMUSG00000028101	Pias3	Pias3l	protein inhibitor of activated STAT 3	protein-coding	0.0	0.0	2.0	3.5	0.0	0.5
Merged-chr1-173451863-4	chr1	173451375	173452375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 2 of 8)	intron (NM_001013779, intron 2 of 8)	31271.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	29.5	63.5	47.5	19.5	58.0	35.0
Merged-chr16-90215397-4	chr16	90214901	90215901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5341.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59649224-4	chr15	59648744	59649744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144549, exon 1 of 3)	exon (NM_144549, exon 1 of 3)	590.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121857765-4	chr9	121857269	121858269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357839)	promoter-TSS (NM_001357839)	27.0	NM_001357841	56295.0	Mm.347915	NM_019814	ENSMUSG00000038412	Higd1a	2210020B17Rik|7420700H20Rik|AI303276|AW049839|HIMP1|Hig1	HIG1 domain family, member 1A	protein-coding	242.0	325.0	294.5	196.5	333.5	313.5
Merged-chr2-91710904-4	chr2	91710404	91711404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145528)	promoter-TSS (NM_145528)	52.0	NM_001356518	241547.0	Mm.130331	NM_178724	ENSMUSG00000027243	Harbi1	D230010M03Rik	harbinger transposase derived 1	protein-coding	143.0	344.0	241.5	137.5	333.0	226.0
Merged-chr1-134361953-4	chr1	134361476	134362476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020588)	promoter-TSS (NM_020588)	23.0	NM_020588	57439.0	Mm.393140	NM_020588	ENSMUSG00000042305	Tmem183a	1300007B12Rik|1700020N19Rik|Tmem183	transmembrane protein 183A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52884407-4	chr2	52883869	52884869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	MTD|LTR|ERVL-MaLR	26501.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22096241-4	chr9	22095724	22096724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3029.0	NM_009922	12797.0	Mm.4356	NM_009922	ENSMUSG00000001349	Cnn1	CN|CnnI	calponin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147861123-4	chr5	147860615	147861615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025624, intron 1 of 5)	intron (NM_025624, intron 1 of 5)	487.0	NM_025624	66537.0	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45113082-4	chr2	45112577	45113577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355289, exon 2 of 11)	5' UTR (NM_001355289, exon 2 of 11)	175.0	NM_001355290	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-185363764-4	chr1	185363270	185364270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357474, intron 1 of 32)	intron (NM_001357474, intron 1 of 32)	726.0	NM_001357474	107508.0	Mm.154511	NM_029735	ENSMUSG00000026615	Eprs	2410081F06Rik|3010002K18Rik|C79379|Qprs	glutamyl-prolyl-tRNA synthetase	protein-coding	131.5	219.5	160.5	104.5	248.5	157.0
Merged-chr7-55857905-4	chr7	55857391	55858391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164661, intron 2 of 31)	intron (NM_001164661, intron 2 of 31)	15820.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	4.0	24.0	17.5	11.0	19.0	16.0
Merged-chr9-75411706-3	chr9	75411207	75412207	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040719, intron 1 of 3)	MER110A|LTR|ERV1	1523.0	NR_040719	71274.0	Mm.399152	NR_040719	ENSMUSG00000097021	4933433G15Rik	4921522K19Rik	RIKEN cDNA 4933433G15 gene	ncRNA	12.0	17.0	16.5	2.0	7.5	2.5
Merged-chr17-88112473-4	chr17	88111980	88112980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13032.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90014851-4	chr9	90014380	90015380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357743, intron 23 of 26)	intron (NM_001357743, intron 23 of 26)	-39387.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81037349-4	chr10	81036850	81037850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358898)	promoter-TSS (NM_001358898)	-19.0	NM_134135	106947.0	Mm.5353	NM_134135	ENSMUSG00000046822	Slc39a3	AI845814|ZIP-3|Zip3	solute carrier family 39 (zinc transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8700368-4	chr4	8699882	8700882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277149, intron 1 of 37)	intron (NM_001277149, intron 1 of 37)	9976.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116150445-6	chr4	116149952	116150952	+	999.9722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290658)	promoter-TSS (NM_001290658)	-66.0	NM_029786	68273.0	Mm.196045	NM_026651	ENSMUSG00000028700	Pomgnt1	0610016I07Rik|4930467B06Rik	protein O-linked mannose beta 1,2-N-acetylglucosaminyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-164153024-4	chr1	164152524	164153524	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037987)	promoter-TSS (NR_037987)	-807.0	NR_037987	100503816.0	Mm.398579	NR_037987	ENSMUSG00000086593	Gm16548	-	predicted gene 16548	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11774209-4	chr11	11773712	11774712	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34750.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74773289-4	chr1	74772805	74773805	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009526, intron 1 of 3)	intron (NM_009526, intron 1 of 3)	1413.0	NM_009526	22420.0	Mm.268282	NM_009526	ENSMUSG00000033227	Wnt6	AA409270|Wnt-6	wingless-type MMTV integration site family, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66082175-4	chr9	66081659	66082659	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12428.0	NM_001025612	382083.0	Mm.477103	NM_001025612	ENSMUSG00000039452	Snx22	Gm1120	sorting nexin 22	protein-coding	4.0	1.0	2.0	4.5	6.0	2.0
Merged-chr5-103744774-4	chr5	103744271	103745271	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9391.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38761594-4	chr16	38761113	38762113	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152434, intron 4 of 6)	ORR1F|LTR|ERVL-MaLR	19354.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	26.5	43.5	29.0	26.0	44.0	34.0
Merged-chr2-14252249-4	chr2	14251736	14252736	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 4 of 29)	intron (NM_008625, intron 4 of 29)	-8767.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-57786291-4	chr18	57785773	57786773	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152225, intron 1 of 2)	intron (NR_152225, intron 1 of 2)	6060.0	NR_152225	100503033.0	Mm.381112	NR_152224		Gm19519	-	predicted gene, 19519	ncRNA	6.0	0.0	8.0	2.5	0.5	0.0
Merged-chr6-134461345-4	chr6	134460819	134461819	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 17 of 22)	intron (NM_008514, intron 17 of 22)	46891.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	21.0	42.5	22.0	99.0	222.5	161.5
Merged-chr9-109923997-4	chr9	109923514	109924514	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7760.0	NM_001205331	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8840618-4	chr19	8840155	8841155	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290823, intron 1 of 10)	intron (NM_001290823, intron 1 of 10)	152.0	NM_001290823	14705.0	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146293523-4	chr5	146293019	146294019	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153599, intron 7 of 12)	intron (NM_153599, intron 7 of 12)	62269.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-81668187-4	chr17	81667684	81668684	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	70203.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72789377-8	chr6	72788816	72789816	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009332)	promoter-TSS (NM_009332)	-271.0	NM_009332	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182539549-4	chr1	182539043	182540043	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21933.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46639227-4	chr8	46638753	46639753	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009810, exon 7 of 7)	3' UTR (NM_009810, exon 7 of 7)	21962.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101918378-4	chr13	101917884	101918884	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-150167.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122794690-7	chr10	122794160	122795160	+	999.9523929999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 2 of 9)	intron (NM_001110218, intron 2 of 9)	115345.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	6.0	1.0	7.0	0.0	4.5	7.5
Merged-chr1-34439405-12	chr1	34438887	34439887	+	999.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178601)	promoter-TSS (NM_178601)	285.0	NM_027159	69668.0	Mm.379170	NM_027159	ENSMUSG00000042111	Ccdc115	2310061I09Rik|Ccp1	coiled-coil domain containing 115	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-17160436-4	chr11	17159923	17160923	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024459, intron 1 of 5)	intron (NM_024459, intron 1 of 5)	1125.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	35.5	91.0	58.0	36.0	92.0	61.5
Merged-chr10-22732404-4	chr10	22731904	22732904	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011603)	promoter-TSS (NM_011603)	-957.0	NM_011603	237336.0	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53783900-4	chr11	53783430	53784430	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13457.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33436454-4	chr2	33435929	33436929	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5105.0	NM_001276332	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138248274-4	chr1	138247780	138248780	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25458.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83695512-4	chr8	83695035	83696035	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177262, intron 1 of 21)	(CA)n|Simple_repeat|Simple_repeat	-1474.0	NM_001199593	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	17.5	72.5	35.5	21.5	44.0	41.0
Merged-chr17-35208426-4	chr17	35207918	35208918	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3067.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	8.0	21.5	5.0	5.0	14.5	5.0
Merged-chr15-6624549-4	chr15	6624041	6625041	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155272, intron 3 of 6)	intron (NR_155272, intron 3 of 6)	29762.0	NR_155272	102632231.0	Mm.444780	NR_155272		LOC102632231	-	uncharacterized LOC102632231	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-60616333-4	chr3	60615836	60616836	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 6 of 7)	intron (NM_001253711, intron 6 of 7)	115157.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	17.0	41.0	17.5	2.5	7.0	6.0
Merged-chr18-61767910-4	chr18	61767407	61768407	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178928, intron 1 of 18)	intron (NM_178928, intron 1 of 18)	18755.0	NM_178928	106877.0	Mm.26632	NM_178928	ENSMUSG00000033032	Afap1l1	AI173486	actin filament associated protein 1-like 1	protein-coding	13.0	1.0	2.0	1.0	0.0	2.5
Merged-chr7-116457911-4	chr7	116457431	116458431	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14473.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70835290-4	chr17	70834810	70835810	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11467.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-63492825-4	chr17	63492317	63493317	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 1 of 8)	intron (NM_015794, intron 1 of 8)	7763.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-144258040-2	chr5	144257500	144258500	+	999.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163709, intron 2 of 2)	intron (NM_001163709, intron 2 of 2)	2775.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	7.5	3.0	1.5	1.0	4.0	7.0
Merged-chr10-44665807-6	chr10	44665344	44666344	+	999.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-207096.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133774961-7	chr4	133774578	133775578	+	999.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21467.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	170.0	188.5	193.5	75.5	170.5	105.0
Merged-chr5-113225287-3	chr5	113224790	113225790	+	999.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-1619.0	NM_001033428	333048.0	Mm.332586	NM_001033428	ENSMUSG00000066964	Tmem211	Gm854	transmembrane protein 211	protein-coding	0.0	5.0	1.0	0.0	0.0	9.0
Merged-chr10-21991524-4	chr10	21991034	21992034	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161849)	promoter-TSS (NM_001161849)	-689.0	NM_001161849	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	74.5	178.0	193.5	59.0	172.5	156.5
Merged-chr1-138267879-4	chr1	138267386	138268386	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5852.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32635209-4	chr12	32634678	32635678	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-185157.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.5	25.5	17.5	23.0	38.0	47.5
Merged-chr16-11282959-4	chr16	11282455	11283455	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28510.0	NR_035466	100316833.0		NR_035466	ENSMUSG00000088544	Mir1945	mir-1945|mmu-mir-1945	microRNA 1945	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-51173147-4	chr6	51172635	51173635	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96775.0	NR_029719	387166.0		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84345150-4	chr3	84344650	84345650	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34771.0	NR_040752	75309.0	Mm.159497	NR_040752	ENSMUSG00000104004	4930565D16Rik	-	RIKEN cDNA 4930565D16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21200196-4	chr13	21199724	21200724	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Leu-TTG|tRNA|tRNA	20293.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	0.0	2.5	5.0	10.0	0.5	2.0
Merged-chr4-9632581-2	chr4	9632081	9633081	+	999.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177856, intron 4 of 4)	intron (NM_001177856, intron 4 of 4)	11136.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	26.5	21.0	18.5	8.0	32.0	24.5
Merged-chr8-72162798-4	chr8	72162309	72163309	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023126, intron 1 of 7)	intron (NM_023126, intron 1 of 7)	1609.0	NM_023126	17274.0	Mm.162811	NM_023126	ENSMUSG00000003037	Rab8a	AA409338|Mel	RAB8A, member RAS oncogene family	protein-coding	31.5	73.5	33.5	20.0	33.0	33.0
Merged-chr5-64602112-4	chr5	64601616	64602616	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045078, exon 3 of 4)	non-coding (NR_045078, exon 3 of 4)	8583.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	11.5	22.0	16.5	7.0	17.5	18.5
Merged-chr8-88228984-4	chr8	88228488	88229488	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164499, intron 2 of 11)	intron (NM_001164499, intron 2 of 11)	29775.0	NM_001164498	214627.0	Mm.491211	NM_001164497	ENSMUSG00000036779	Papd5	5730445M16Rik|5830428A09	PAP associated domain containing 5	protein-coding	0.0	2.5	0.5	0.0	3.5	1.5
Merged-chr7-99159033-4	chr7	99158503	99159503	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026384, exon 5 of 8)	exon (NM_026384, exon 5 of 8)	-17859.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0.0	0.0	8.5	6.5	2.0	1.0
Merged-chr11-121735205-4	chr11	121734701	121735701	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32774.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	1.5	19.0	2.5	0.0	0.0	5.5
Merged-chr19-4229646-2	chr19	4229146	4230146	+	999.875	f1_balb.idr|f1_c57bl6.idr	intron (NR_132308, intron 2 of 3)	intron (NR_132308, intron 2 of 3)	-2247.0	NM_027196	69745.0	Mm.32518	NM_027196	ENSMUSG00000024854	Pold4	2410012M21Rik|AI463381|AW060307|Polds|p12	polymerase (DNA-directed), delta 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3911278-2	chr19	3910778	3911778	+	999.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271443, intron 3 of 6)	intron (NM_001271443, intron 3 of 6)	1496.0	NM_144870	225887.0	Mm.44227	NM_144870	ENSMUSG00000059734	Ndufs8	BC021616|CI-23kD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-92875955-4	chr8	92875452	92876452	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357375, intron 6 of 12)	intron (NM_001357375, intron 6 of 12)	20619.0	NM_001357374	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	52.0	82.0	49.0	27.5	52.5	24.0
Merged-chr13-60628029-4	chr13	60627512	60628512	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	25801.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70273114-4	chr8	70272615	70273615	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9884.0	NM_011984	26558.0	Mm.388127	NM_011984	ENSMUSG00000003573	Homer3	AW146114	homer scaffolding protein 3	protein-coding	16.0	20.5	16.5	10.0	6.0	7.5
Merged-chr17-36218918-4	chr17	36218439	36219439	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-28788.0	NM_008208	15043.0	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45565008-2	chr17	45564508	45565508	+	999.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357105, exon 3 of 4)	exon (NM_001357105, exon 3 of 4)	1072.0	NM_001357105	73836.0	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	7.5	18.0	19.5	9.5	17.0	8.5
Merged-chr12-75670552-2	chr12	75670052	75671052	+	999.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14-int|LTR|ERV1	-1015.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60717486-2	chr13	60716986	60717986	+	999.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 4 of 26)	intron (NM_134062, intron 4 of 26)	68878.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	9.0	0.0	13.0	11.5	1.5	7.5
Merged-chr7-143127843-2	chr7	143127343	143128343	+	999.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008434, intron 1 of 15)	intron (NM_008434, intron 1 of 15)	20589.0	NM_008434	16535.0	Mm.439769	NM_008434	ENSMUSG00000009545	Kcnq1	AW559127|KVLQT1|Kcna9	potassium voltage-gated channel, subfamily Q, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55766944-4	chr1	55766445	55767445	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-164296.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119597798-4	chr13	119597309	119598309	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177666, intron 2 of 3)	intron (NM_001177666, intron 2 of 3)	-26010.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-69971641-4	chr7	69971148	69972148	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	366174.0	NR_131145	624549.0	Mm.116344	NR_131144	ENSMUSG00000109097	Gm29683	Gm44536	predicted gene, 29683	ncRNA	0.0	0.0	1.0	0.0	3.5	4.0
Merged-chr7-49007097-4	chr7	49006583	49007583	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	48010.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-22813497-4	chr14	22813000	22814000	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-270702.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77798152-4	chr15	77797632	77798632	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 3 of 40)	intron (NM_022410, intron 3 of 40)	-41122.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93425861-4	chr10	93425376	93426376	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7231.0	NR_106161	102465791.0		NR_106161	ENSMUSG00000098679	Mir7688	Gm27874|mmu-mir-7688	microRNA 7688	ncRNA	2.0	4.0	2.0	5.0	15.5	3.0
Merged-chr2-32089790-4	chr2	32089267	32090267	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5098.0	NR_151493	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-80874359-4	chr8	80873859	80874859	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021356, intron 1 of 9)	intron (NM_021356, intron 1 of 9)	6120.0	NM_021356	14388.0	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	32.5	19.5	27.5	59.5	100.5	33.5
Merged-chr11-3156968-4	chr11	3156357	3157357	+	999.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030207, exon 12 of 33)	exon (NM_030207, exon 12 of 33)	32836.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23701376-4	chr13	23700880	23701880	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010424)	TTS (NM_010424)	-2922.0	NM_178208	319155.0	Mm.261662	NM_178208	ENSMUSG00000060678	Hist1h4c	-	histone cluster 1, H4c	protein-coding	9.0	39.5	21.5	25.5	20.5	18.5
Merged-chr10-81482752-4	chr10	81482189	81483189	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311124)	promoter-TSS (NM_001311124)	20.0	NM_176954	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57570729-4	chr16	57570233	57571233	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001177871, exon 2 of 2)	exon (NM_001177871, exon 2 of 2)	21491.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84890082-4	chr2	84889556	84890556	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3364.0	NM_199223	269295.0	Mm.86447	NM_199223	ENSMUSG00000050896	Rtn4rl2	Ngr2|Ngrh1|Ngrl3	reticulon 4 receptor-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70239981-4	chr11	70239473	70240473	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173742)	promoter-TSS (NM_173742)	-121.0	NM_173742	52898.0	Mm.29852	NM_173742	ENSMUSG00000093989	Rnasek	2310033H11Rik|AA571397|D11Bwg0434e	ribonuclease, RNase K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70655517-4	chr11	70655024	70656024	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011072)	promoter-TSS (NM_011072)	-874.0	NM_011072	18643.0	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99203393-4	chr10	99202887	99203887	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59844.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8666860-4	chr4	8666363	8667363	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23543.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-71855353-4	chr11	71854872	71855872	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84750.0	NR_045942	73816.0	Mm.390391	NR_045942	ENSMUSG00000085528	4930401O10Rik	-	RIKEN cDNA 4930401O10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69340561-7	chr11	69340073	69341073	+	999.8095089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027827)	promoter-TSS (NR_027827)	-196.0	NR_027827	80515.0	Mm.5324	NM_020591	ENSMUSG00000043419	Chd3os	2310043C11Rik|A030009H04Rik|AA589459|AB041807|MNCb-2875|RNF21	chromodomain helicase DNA binding protein 3, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94617514-6	chr16	94617036	94618036	+	999.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	intron (NM_001113389, intron 2 of 11)	6117.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172504090-5	chr1	172503571	172504571	+	999.7999880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178598, intron 1 of 4)	(GGGTG)n|Simple_repeat|Simple_repeat	3825.0	NM_178598	21346.0	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	1.5	3.5	5.0	0.0	7.5	0.5
Merged-chr14-122056966-4	chr14	122056454	122057454	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22280.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	0.0	5.5	0.5	1.0	2.0	1.5
Merged-chr11-80476771-4	chr11	80476294	80477294	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009871)	promoter-TSS (NM_009871)	-229.0	NM_009871	12569.0	Mm.142275	NM_009871	ENSMUSG00000048895	Cdk5r1	Cdk5r|D11Bwg0379e|p25|p35	cyclin-dependent kinase 5, regulatory subunit 1 (p35)	protein-coding	0.0	0.0	1.0	1.5	1.0	0.0
Merged-chr2-178416665-4	chr2	178416168	178417168	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081289, exon 2 of 4)	5' UTR (NM_001081289, exon 2 of 4)	2134.0	NM_001081289	71532.0	Mm.40216	NM_001081289	ENSMUSG00000070476	Fam217b	9030418K01Rik|AI851938	family with sequence similarity 217, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-55016310-4	chr6	55015790	55016790	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-21711.0	NM_180678	353172.0	Mm.250004	NM_180678	ENSMUSG00000029777	Gars	GENA202|Gena201|Nmf249|Sgrp23	glycyl-tRNA synthetase	protein-coding	2.5	2.5	2.0	0.0	6.5	0.0
Merged-chr5-67426719-4	chr5	67426211	67427211	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164806, intron 1 of 4)	CpG	1088.0	NM_001164806	666938.0	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78395786-4	chr9	78395292	78396292	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001191044)	promoter-TSS (NM_001191044)	15.0	NM_001191044	100048658.0	Mm.158166	NM_001191044	ENSMUSG00000070291	Ddx43	-	DEAD (Asp-Glu-Ala-Asp) box polypeptide 43	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115491950-4	chr5	115491416	115492416	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7432.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	8.5	29.5	18.5	3.5	25.0	17.0
Merged-chr8-107435777-4	chr8	107435272	107436272	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025830)	promoter-TSS (NM_025830)	-626.0	NM_025830	66894.0	Mm.390058	NM_025830	ENSMUSG00000031930	Wwp2	1300010O06Rik|AA690238|AIP2|AW554328	WW domain containing E3 ubiquitin protein ligase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129031615-4	chr4	129031116	129032116	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26655.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-51470959-4	chr6	51470382	51471382	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182650)	promoter-TSS (NM_182650)	266.0	NM_007624	12417.0	Mm.280968	NM_007624	ENSMUSG00000029836	Cbx3	HP1g|M32	chromobox 3	protein-coding	6.0	4.5	1.5	4.5	5.0	5.5
Merged-chr11-120957959-4	chr11	120957453	120958453	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030696, exon 6 of 6)	exon (NM_030696, exon 6 of 6)	8886.0	NM_001038654	80879.0	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	6.5	13.0	5.5	0.0	1.0	4.0
Merged-chr4-150594518-4	chr4	150594012	150595012	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	URR1B|DNA|hAT-Charlie	57662.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50239301-4	chr11	50238758	50239758	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008521)	promoter-TSS (NM_008521)	-726.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126780134-4	chr7	126779674	126780674	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026875, exon 5 of 5)	3' UTR (NM_026875, exon 5 of 5)	-1309.0	NM_011538	21389.0	Mm.727	NM_011538	ENSMUSG00000030699	Tbx6	rv	T-box 6	protein-coding	11.5	26.0	10.5	16.0	26.0	20.0
Merged-chr6-99540830-4	chr6	99540328	99541328	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19835.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132793722-3	chr7	132793224	132794224	+	999.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	-6789.0	NM_175268	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-93901513-3	chr13	93901013	93902013	+	999.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009712, intron 6 of 7)	intron (NM_009712, intron 6 of 7)	110736.0	NR_049198	100885837.0		NR_049198	ENSMUSG00000093480	Mir5624	Gm25075|mir-5624|mmu-mir-5624	microRNA 5624	ncRNA	7.0	0.0	2.0	0.5	0.0	4.0
Merged-chr11-30163309-3	chr11	30162828	30163828	+	999.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175836, intron 1 of 34)	intron (NM_175836, intron 1 of 34)	34929.0	NM_009260	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	4.0	1.5	5.0	12.5	6.0	7.0
Merged-chr6-108532950-4	chr6	108532453	108533453	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 60 of 61)	intron (NM_010585, intron 60 of 61)	43210.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.5	3.0	9.5	2.0	9.5	12.0
Merged-chr13-43531548-4	chr13	43530937	43531937	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28754.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	0.0	4.0	7.0	4.0	7.5	12.5
Merged-chr11-74576027-4	chr11	74575516	74576516	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 1 of 24)	intron (NM_001015046, intron 1 of 24)	14142.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0.0	0.5	0.5	0.0	0.5	1.5
Merged-chr4-46534691-4	chr4	46534216	46535216	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029077, intron 1 of 5)	intron (NM_029077, intron 1 of 5)	-1185.0	NR_151695	105247126.0	Mm.477962	NR_151695		Gm16731	-	predicted gene, 16731	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75054300-4	chr11	75053791	75054791	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 13 of 18)	intron (NM_001002764, intron 13 of 18)	11700.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-64756536-4	chr16	64756068	64757068	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14371.0	NM_026273	67609.0	Mm.212157	NM_026273	ENSMUSG00000059920	4930453N24Rik	AI649104|din	RIKEN cDNA 4930453N24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-157553229-4	chr1	157552740	157553740	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159986, intron 14 of 25)	intron (NM_001159986, intron 14 of 25)	27070.0	NM_001159986	89867.0	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding	2.0	4.0	6.0	7.5	0.0	5.0
Merged-chr16-30512154-4	chr16	30511657	30512657	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172614, exon 10 of 10)	3' UTR (NM_172614, exon 10 of 10)	38421.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	13.0	23.5	39.0	24.0	47.0	57.0
Merged-chr2-118961727-4	chr2	118961229	118962229	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35232.0	NM_028117	72136.0	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	13.0	20.0	13.0	0.5	2.5	0.0
Merged-chr7-135768776-4	chr7	135768269	135769269	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52390.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151570541-2	chr1	151570041	151571041	+	999.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022018)	promoter-TSS (NM_022018)	-832.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-61365647-6	chr3	61365106	61366106	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028712, exon 1 of 1)	exon (NM_028712, exon 1 of 1)	1099.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-31131037-4	chr7	31130535	31131535	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153431, intron 18 of 18)	ORR1E|LTR|ERVL-MaLR	-4012.0	NM_011322	20266.0	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	0.0	16.0	9.5	30.0	28.0	23.5
Merged-chr16-55636992-4	chr16	55636461	55637461	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	142230.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117280588-4	chr8	117280096	117281096	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	23577.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36126360-4	chr1	36125877	36126877	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17936.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138068314-3	chr4	138067726	138068726	+	999.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256195, intron 4 of 34)	intron (NM_001256195, intron 4 of 34)	70292.0	NR_126429	73563.0	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	44.0	233.0	100.5	19.5	95.5	40.0
Merged-chr5-21200223-4	chr5	21199718	21200718	+	999.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 3 of 26)	intron (NR_153365, intron 3 of 26)	13951.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-6215366-4	chr1	6214825	6215825	+	999.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009826, intron 1 of 23)	CpG	663.0	NM_009826	12421.0	Mm.293811	NM_009826	ENSMUSG00000025907	Rb1cc1	2900055E04Rik|5930404L04Rik|Cc1|FIP200|LaXp180	RB1-inducible coiled-coil 1	protein-coding	13.0	19.5	43.0	10.0	19.0	56.5
Merged-chr19-45843610-4	chr19	45843125	45844125	+	999.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198296, intron 24 of 25)	intron (NM_198296, intron 24 of 25)	-27562.0	NM_145703	80906.0	Mm.213204	NM_030716	ENSMUSG00000025221	Kcnip2	KChIP2	Kv channel-interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180422274-4	chr1	180421757	180422757	+	999.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081175, exon 8 of 8)	3' UTR (NM_001081175, exon 8 of 8)	61247.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-80984097-4	chr8	80983585	80984585	+	999.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027554, intron 9 of 9)	intron (NM_027554, intron 9 of 9)	30821.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	71.5	102.0	58.0	28.5	72.0	54.5
Merged-chr17-86937977-4	chr17	86937472	86938472	+	999.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9915.0	NM_029121	74915.0	Mm.159369	NM_029121	ENSMUSG00000053375	Atp6v1e2	4930500C14Rik|Atp6e1|E1	ATPase, H+ transporting, lysosomal V1 subunit E2	protein-coding	4.5	0.0	2.5	7.0	4.0	4.0
Merged-chr16-33684456-4	chr16	33683944	33684944	+	999.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175256)	promoter-TSS (NM_175256)	-22.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-124657515-4	chr4	124656999	124657999	+	999.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011141)	promoter-TSS (NM_011141)	-147.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46555896-4	chr4	46555431	46556431	+	999.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 2 of 11)	intron (NM_001164804, intron 2 of 11)	10509.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	75.5	85.5	97.0	91.0	132.0	141.0
Merged-chr11-87853254-4	chr11	87852781	87853781	+	999.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039684)	promoter-TSS (NM_001039684)	56.0	NM_001039684	380718.0	Mm.24404	NM_001039684	ENSMUSG00000034121	Mks1	AK190930|B8d3|avc6	Meckel syndrome, type 1	protein-coding	6.0	0.0	1.0	2.5	2.0	0.5
Merged-chr8-105264649-4	chr8	105264149	105265149	+	999.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015821)	promoter-TSS (NM_015821)	1.0	NM_015821	50788.0	Mm.334764	NM_015821	ENSMUSG00000033313	Fbxl8	FBL8	F-box and leucine-rich repeat protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36691585-4	chr18	36691102	36692102	+	999.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172831, intron 5 of 12)	intron (NM_172831, intron 5 of 12)	4323.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	7.5	0.5	4.5	2.0	7.0	1.0
Merged-chr15-41832406-5	chr15	41831920	41832920	+	999.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130164, intron 1 of 5)	intron (NM_001130164, intron 1 of 5)	1462.0	NM_001130164	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8501054-4	chr12	8500580	8501580	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1071.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	77.0	284.5	181.0	80.5	285.5	201.0
Merged-chr8-35136797-3	chr8	35136290	35137290	+	999.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-171100.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	13.5	25.5	39.0	7.0	1.0	7.0
Merged-chr13-91636198-4	chr13	91635694	91636694	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 4 of 15)	T-rich|Low_complexity|Low_complexity	-105327.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	22.5	58.5	25.5	64.5	199.0	101.5
Merged-chr12-40018284-4	chr12	40017774	40018774	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCTCCC)n|Simple_repeat|Simple_repeat	19102.0	NM_007487	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25765265-4	chr7	25764766	25765766	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 14 of 19)	intron (NM_009465, intron 14 of 19)	-10507.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-136915236-4	chr2	136914715	136915715	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355671, intron 2 of 6)	intron (NM_001355671, intron 2 of 6)	15864.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-33261442-4	chr4	33260955	33261955	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12668.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	10.5	2.5	5.5	0.0	7.0	3.0
Merged-chr7-27302435-3	chr7	27301954	27302954	+	999.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31194.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-16119605-4	chr4	16119103	16120103	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44040.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115633052-4	chr11	115632495	115633495	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4700.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62224142-4	chr11	62223659	62224659	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-24825.0	NM_007413	11541.0	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6519806-4	chr11	6519297	6520297	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178440, intron 1 of 21)	intron (NM_178440, intron 1 of 21)	1161.0	NM_178440	246177.0	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	16.0	50.0	60.0	53.5	69.0	79.5
Merged-chr2-167492413-4	chr2	167491916	167492916	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030743)	promoter-TSS (NM_030743)	-229.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44518386-4	chr13	44517869	44518869	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78642.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	0.0	0.0	0.5	1.5	0.0	0.0
Merged-chr2-6647122-3	chr2	6646589	6647589	+	999.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 5 of 15)	intron (NM_001110232, intron 5 of 15)	74573.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-17905766-3	chr14	17905282	17906282	+	999.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-75862.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	4.0	14.5	5.0	0.0	19.5	0.5
Merged-chr10-8460265-3	chr10	8459784	8460784	+	999.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 1 of 7)	intron (NM_177387, intron 1 of 7)	58541.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88625005-3	chr3	88624490	88625490	+	999.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 1 of 21)	intron (NM_001198913, intron 1 of 21)	3596.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	22.0	25.0	13.0	14.5	72.0	33.5
Merged-chr6-108702794-4	chr6	108702306	108703306	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41872.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0.5	1.5	7.5	2.0	12.5	5.5
Merged-chr6-115809076-4	chr6	115808560	115809560	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172086)	promoter-TSS (NM_172086)	-317.0	NM_172086	19951.0	Mm.104368	NM_172086	ENSMUSG00000057841	Rpl32	AU020185|rpL32-3A	ribosomal protein L32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-65374988-3	chr14	65374493	65375493	+	999.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199029, intron 1 of 9)	intron (NM_199029, intron 1 of 9)	16317.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	0.0	1.0	2.0	0.0	0.0	0.5
Merged-chr4-126261603-2	chr4	126261103	126262103	+	999.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013718)	promoter-TSS (NM_013718)	-802.0	NM_013718	27096.0	Mm.8392	NM_013718	ENSMUSG00000028847	Trappc3	1110058K12Rik|AI835942|AU019197|Bet3	trafficking protein particle complex 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6271646-2	chr2	6271146	6272146	+	999.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 3 of 6)	intron (NR_040333, intron 3 of 6)	-51111.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.0	0.0	4.5	0.0	2.0	0.5
Merged-chr6-89311695-4	chr6	89311212	89312212	+	999.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-25987.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103349565-4	chr14	103349060	103350060	+	999.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2760.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30782587-4	chr2	30782100	30783100	+	999.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19137.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107931828-4	chr3	107931330	107932330	+	999.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026672)	promoter-TSS (NM_026672)	-13.0	NM_026672	68312.0	Mm.458189	NM_026672	ENSMUSG00000004035	Gstm7	0610005A07Rik|AI894236|Cd203c	glutathione S-transferase, mu 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-6241964-4	chr18	6241472	6242472	+	999.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008448)	promoter-TSS (NM_008448)	-448.0	NM_008448	16573.0	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-16875475-4	chr12	16874972	16875972	+	999.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19506.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	91.0	230.5	190.5	89.0	210.5	172.5
Merged-chr17-31060823-4	chr17	31060313	31061313	+	999.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 1 of 14)	intron (NM_009593, intron 1 of 14)	3119.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173737871-4	chr1	173737356	173738356	+	999.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204910, intron 1 of 7)	intron (NM_001204910, intron 1 of 7)	3953.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	68.5	111.5	72.5	39.0	113.5	59.0
Merged-chr10-99460965-4	chr10	99460473	99461473	+	999.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-148198.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43139787-4	chr1	43139283	43140283	+	999.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010212, intron 3 of 5)	intron (NM_010212, intron 3 of 5)	24178.0	NM_010212	14200.0	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64113352-4	chr15	64112856	64113856	+	999.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010026, intron 25 of 30)	intron (NM_010026, intron 25 of 30)	-52908.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	6.0	1.0	2.0	1.0	0.5	4.5
Merged-chr9-48418191-3	chr9	48417680	48418680	+	999.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36164.0	NR_026561	667933.0	Mm.491076	NR_026561		Gm8884	EG667933	predicted gene 8884	ncRNA	35.0	92.5	96.5	1.0	3.5	1.0
Merged-chr11-120437457-6	chr11	120436874	120437874	+	999.595215	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199469, intron 1 of 15)	CpG	326.0	NM_001195023	217365.0	Mm.309520	NM_199469	ENSMUSG00000039703	Nploc4	AK129375|Npl4|mKIAA1499	NPL4 homolog, ubiquitin recognition factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101910412-2	chr11	101909912	101910912	+	999.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16058.0	NM_010791	17285.0	Mm.3404	NM_010791	ENSMUSG00000001493	Meox1	AI385561|D330041M02Rik|Mox-1|Mox1	mesenchyme homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52937192-2	chr2	52936692	52937692	+	999.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	79324.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130828937-2	chr4	130828437	130829437	+	999.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36400.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-126990525-4	chr10	126990034	126991034	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113470, intron 1 of 7)	intron (NM_001113470, intron 1 of 7)	-4996.0	NR_029803	723962.0		NR_029803	ENSMUSG00000065430	Mir26a-2	Mirn26a-2|mir-26a-2	microRNA 26a-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67767815-4	chr15	67767307	67768307	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	491049.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	4.5	6.0	18.5	16.5	3.0	10.0
Merged-chr1-155147442-4	chr1	155146958	155147958	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355062)	promoter-TSS (NM_001355062)	-644.0	NM_008209	15064.0	Mm.7580	NM_008209	ENSMUSG00000026471	Mr1	H2ls	major histocompatibility complex, class I-related	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96640874-4	chr15	96640375	96641375	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166458, intron 1 of 15)	intron (NM_001166458, intron 1 of 15)	1087.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75695375-4	chr18	75694847	75695847	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 1 of 11)	intron (NM_201354, intron 1 of 11)	2349.0	NM_201354	269037.0	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	2.5	22.0	10.5	14.0	25.0	24.5
Merged-chr6-113078585-4	chr6	113078064	113079064	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028385, intron 1 of 21)	intron (NM_028385, intron 1 of 21)	925.0	NM_028385	72895.0	Mm.367159	NM_028385	ENSMUSG00000034269	Setd5	2900045N06Rik|C330007C20|C85544|mKIAA1757	SET domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116631124-4	chr4	116630622	116631622	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3171.0	NM_016777	50927.0	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-5928003-4	chr15	5927491	5928491	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116713.0	NR_155428	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36491763-4	chr18	36491241	36492241	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24064.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	5.5	4.5	0.0	2.5	7.5	10.5
Merged-chr2-153147888-4	chr2	153147406	153148406	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 11 of 12)	intron (NM_001172117, intron 11 of 12)	-13395.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-118388243-4	chr1	118387763	118388763	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359346)	promoter-TSS (NM_001359346)	-795.0	NM_001359329	76707.0	Mm.138740	NM_029709	ENSMUSG00000064302	Clasp1	1700030C23Rik|5730583A19Rik|B130045P17Rik|CLASP1alpha	CLIP associating protein 1	protein-coding	26.5	49.0	45.0	26.5	49.0	45.5
Merged-chr5-30850474-4	chr5	30849980	30850980	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133350, intron 1 of 6)	intron (NM_133350, intron 1 of 6)	-11327.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59840947-4	chr13	59840429	59841429	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17782.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0.0	0.0	2.5	0.0	5.0	3.5
Merged-chr8-82382486-4	chr8	82381991	82382991	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254747, intron 1 of 7)	intron (NM_001254747, intron 1 of 7)	20095.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	41.5	163.0	138.0	67.0	103.5	77.0
Merged-chr2-84523638-4	chr2	84523164	84524164	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16791.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	6.0	38.5	15.5	6.0	38.5	14.5
Merged-chr15-59737397-4	chr15	59736902	59737902	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57557.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-49982681-4	chr18	49982184	49983184	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	3257.0	NM_001177759	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	4.0	34.0	6.5	7.5	13.5	7.5
Merged-chr13-55418259-4	chr13	55417758	55418758	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021489, exon 14 of 14)	exon (NM_021489, exon 14 of 14)	-3026.0	NM_029303	75477.0	Mm.432537	NM_029303	ENSMUSG00000044444	Pfn3	1700012P12Rik	profilin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr3-15243898-7	chr3	15243396	15244396	+	999.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88406.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5345019-6	chr18	5344499	5345499	+	999.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10192.0	NM_001360447	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64736874-5	chr9	64736287	64737287	+	999.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017382, intron 1 of 4)	intron (NM_017382, intron 1 of 4)	969.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13673438-4	chr8	13672920	13673920	+	999.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	4167.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-12304066-3	chr1	12303575	12304575	+	999.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-121911.0	NR_105759	102465961.0		NR_105759	ENSMUSG00000098555	Mir6341	Gm27262|mmu-mir-6341	microRNA 6341	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86493596-4	chr6	86493084	86494084	+	999.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-5357.0	NR_040292	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-76933503-4	chr18	76932991	76933991	+	999.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025409, intron 1 of 2)	LTR10_RN|LTR|ERVK	3464.0	NM_025409	66191.0	Mm.28593	NM_025409	ENSMUSG00000090000	Ier3ip1	1110057H19Rik|AI644142|AL022842|AL022863|AV026606	immediate early response 3 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10842364-4	chr17	10841857	10842857	+	999.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317726, intron 1 of 6)	intron (NM_001317726, intron 1 of 6)	1998.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59802556-4	chr15	59802057	59803057	+	999.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7598.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	6.0	6.5	9.5	9.0	5.0	11.0
Merged-chr19-53330269-4	chr19	53329782	53330782	+	999.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008543)	promoter-TSS (NM_001008543)	-126.0	NM_001008543	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-32479331-4	chr6	32478846	32479846	+	999.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-31795.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-48809032-4	chr11	48808539	48809539	+	999.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145377, intron 3 of 5)	intron (NM_145377, intron 3 of 5)	5900.0	NR_028564	100216540.0		NR_028564	ENSMUSG00000064780	Snord95	-	small nucleolar RNA, C/D box 95	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66820439-4	chr15	66819939	66820939	+	999.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	11390.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102697737-4	chr11	102697206	102698206	+	999.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025918)	promoter-TSS (NM_025918)	19.0	NM_025918	52715.0	Mm.277638	NM_025918	ENSMUSG00000020925	Ccdc43	2610001E01Rik|D11Ertd707e	coiled-coil domain containing 43	protein-coding	33.5	29.0	39.0	16.5	12.5	20.0
Merged-chr10-41385656-4	chr10	41385159	41386159	+	999.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64699.0	NM_001277229	268294.0	Mm.258475	NM_153398	ENSMUSG00000019826	Zbtb24	BC055367|Bif1|Bsg1|ZNF450	zinc finger and BTB domain containing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122804643-4	chr6	122804147	122805147	+	999.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15537.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93311016-3	chr10	93310513	93311513	+	999.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013508, exon 1 of 5)	5' UTR (NM_013508, exon 1 of 5)	146.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	3.5	2.5	6.0	12.5	35.5	25.0
Merged-chr13-89490869-2	chr13	89490369	89491369	+	999.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49767.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	7.0	4.5	7.5	5.5	3.5	9.0
Merged-chr15-74922466-4	chr15	74921970	74922970	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32581.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	9.0	27.0	15.5	9.0	30.5	14.0
Merged-chr19-10218713-2	chr19	10218213	10219213	+	999.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033481, intron 11 of 25)	intron (NM_001033481, intron 11 of 25)	12680.0	NM_001163431	69038.0	Mm.375100	NM_026919	ENSMUSG00000036372	Tmem258	1810006K21Rik	transmembrane protein 258	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130129870-3	chr2	130129356	130130356	+	999.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289747, intron 2 of 13)	ORR1D2|LTR|ERVL-MaLR	6581.0	NM_177726	241636.0	Mm.83437	NM_177726	ENSMUSG00000027403	Tgm6	TGM3L|TGY	transglutaminase 6	protein-coding	36.5	16.5	18.0	0.5	1.5	1.5
Merged-chr11-43380289-2	chr11	43379789	43380789	+	999.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5828.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86397723-4	chr6	86397193	86398193	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025823)	promoter-TSS (NM_025823)	-543.0	NM_025823	66881.0	Mm.30849	NM_025823	ENSMUSG00000029998	Pcyox1	1200015P13Rik|AI115532|AI448340|PCL1|Pcly	prenylcysteine oxidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128376048-2	chr2	128375548	128376548	+	999.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	53303.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	7.5	15.0	8.5	10.5	7.0	2.5
Merged-chr9-78105331-2	chr9	78104831	78105831	+	999.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081490, intron 1 of 12)	intron (NM_001081490, intron 1 of 12)	3325.0	NM_023605	71538.0	Mm.28584	NM_023605	ENSMUSG00000001366	Fbxo9	9030401P18Rik|AA986398	f-box protein 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59727614-2	chr15	59727114	59728114	+	999.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67345.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	27.0	62.5	47.5	33.0	59.5	48.0
Merged-chr7-16274099-2	chr7	16273599	16274599	+	999.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136270)	promoter-TSS (NM_001136270)	-407.0	NM_001136270	66300.0	Mm.218698	NM_001136270	ENSMUSG00000091811	Inafm1	2610014I16Rik|Prr24	InaF motif containing 1	protein-coding	0.5	0.0	4.0	6.0	3.0	1.0
Merged-chr16-24599967-4	chr16	24599452	24600452	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 4 of 12)	intron (NM_178665, intron 4 of 12)	70638.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-13557571-2	chr13	13557071	13558071	+	999.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-32838.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85484191-2	chr12	85483691	85484691	+	999.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	10301.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26663784-2	chr2	26663284	26664284	+	999.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7498.0	NM_010695	16821.0	Mm.123925	NM_010695	ENSMUSG00000026919	Lcn4	A630045M08Rik|Vnsp2	lipocalin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34589963-4	chr17	34589416	34590416	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134116, exon 1 of 4)	5' UTR (NM_134116, exon 1 of 4)	110.0	NM_134116	106512.0	Mm.26584	NM_134116	ENSMUSG00000034786	Gpsm3	AA960287|AGS4	G-protein signalling modulator 3 (AGS3-like, C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101248852-2	chr11	101248352	101249352	+	999.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019444)	TTS (NM_019444)	2518.0	NM_019444	54409.0	Mm.260698	NM_019444	ENSMUSG00000001240	Ramp2	-	receptor (calcitonin) activity modifying protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-8744430-2	chr16	8743930	8744930	+	999.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-6088.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90391800-2	chr3	90391300	90392300	+	999.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145540, exon 30 of 30)	3' UTR (NM_145540, exon 30 of 30)	-1862.0	NM_011988	26568.0	Mm.45519	NM_011988	ENSMUSG00000027932	Slc27a3	Acsvl3|FATP-3|FATP3|Vlcs-3	solute carrier family 27 (fatty acid transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	2.5
Merged-chr4-3229727-2	chr4	3229227	3230227	+	999.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44422.0	NM_001167535	100312471.0	Mm.377218	NM_001167535	ENSMUSG00000115466	Vmn1r3	Gm11778	vomeronasal 1 receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51483494-2	chr10	51482994	51483994	+	999.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008147, intron 5 of 8)	intron (NM_008147, intron 5 of 8)	2882.0	NM_001291892	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-61594505-2	chr3	61594005	61595005	+	999.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	229998.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-12874052-2	chr8	12873552	12874552	+	999.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41841.0	NM_178076	17207.0	Mm.334413	NM_178076	ENSMUSG00000031442	Mcf2l	C130040G20Rik|Dbs|Ost|mKIAA0362	mcf.2 transforming sequence-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116088071-4	chr9	116087579	116088579	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009371, exon 8 of 8)	3' UTR (NM_009371, exon 8 of 8)	87284.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	3.0	15.5	9.5	0.0	22.5	15.5
Merged-chr13-113636598-2	chr13	113636098	113637098	+	999.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18034.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-8677057-2	chr16	8676557	8677557	+	999.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3713.0	NM_001324517	436336.0	Mm.357666	NM_001324517		Gm5767	EG436336|Gm43786	predicted gene 5767	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-181170447-4	chr1	181169934	181170934	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19503.0	NM_030131	98417.0	Mm.38229	NM_030131	ENSMUSG00000062169	Cnih4	AI647760|AW050376|CNIH-4|D530030D03Rik|E430023H19Rik|HSPC163	cornichon family AMPA receptor auxiliary protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-32960757-2	chr14	32960257	32961257	+	999.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001146022, exon 58 of 59)	exon (NM_001146022, exon 58 of 59)	-30625.0	NM_001146021	67580.0	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-131874087-4	chr4	131873583	131874583	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020587, intron 1 of 5)	CpG	444.0	NM_020587	57317.0	Mm.2478	NM_020587	ENSMUSG00000028911	Srsf4	5730499P16Rik|AW550192|MNCb-2616|SRp75|Sfrs4	serine/arginine-rich splicing factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94497600-2	chr16	94497100	94498100	+	999.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007834)	TTS (NM_007834)	29029.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-107607961-4	chr7	107607478	107608478	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163557, intron 1 of 25)	intron (NM_001163557, intron 1 of 25)	1134.0	NM_001163557	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119105908-4	chr4	119105415	119106415	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2830.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	0.0	7.0	1.0	7.0	14.5	0.5
Merged-chr5-139328540-2	chr5	139328040	139329040	+	999.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3076.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102381431-2	chr12	102380931	102381931	+	999.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 7 of 9)	intron (NM_177620, intron 7 of 9)	58382.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-4980289-2	chr3	4979789	4980789	+	999.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-109987.0	NR_153343	100503882.0	Mm.139814	NR_153343	ENSMUSG00000096922	Gm17308	-	predicted gene, 17308	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8882718-2	chr10	8882218	8883218	+	999.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	3352.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	88.0	226.0	151.0	114.0	235.5	139.0
Merged-chr7-105767940-4	chr7	105767470	105768470	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162943, intron 2 of 20)	intron (NM_001162943, intron 2 of 20)	-15735.0	NM_009906	12751.0	Mm.20837	NM_009906	ENSMUSG00000030894	Tpp1	Cln2|LPIC|TPP-1|TPP-I	tripeptidyl peptidase I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24707017-2	chr17	24706511	24707511	+	999.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145396, intron 1 of 21)	B1_Mus2|SINE|Alu	642.0	NM_145396	213773.0	Mm.100353	NM_145396	ENSMUSG00000040688	Tbl3	9430070M15Rik	transducin (beta)-like 3	protein-coding	46.5	104.0	96.5	36.5	96.5	60.5
Merged-chr5-64370471-4	chr5	64369988	64370988	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	97454.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	16.0	68.5	62.0	33.0	44.5	32.0
Merged-chr1-142270453-2	chr1	142269953	142270953	+	999.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1370244.0	NM_020025	26878.0	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98023313-4	chr11	98022813	98023813	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031173)	promoter-TSS (NM_031173)	-686.0	NM_001282978	12295.0	Mm.41252	NM_031173	ENSMUSG00000020882	Cacnb1	CAB1|Cchb1|Cchlb1	calcium channel, voltage-dependent, beta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-6169654-4	chr7	6169181	6170181	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER91A|DNA|hAT-Tip100	-2832.0	NM_028316	72667.0	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-102520408-4	chr9	102519900	102520900	+	999.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024291, intron 3 of 10)	intron (NM_024291, intron 3 of 10)	14262.0	NM_024291	16716.0	Mm.101692	NM_024291	ENSMUSG00000035606	Ky	CD1|D9Mgc44e|ky	kyphoscoliosis peptidase	protein-coding	0.5	1.0	5.5	0.5	1.0	6.0
Merged-chr16-87638285-4	chr16	87637804	87638804	+	999.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_Mur|LTR|ERVK	-60650.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	41.5	25.5	27.0	33.0	52.0	42.5
Merged-chr2-69613497-4	chr2	69612997	69613997	+	999.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27430.0	NM_001081088	14725.0	Mm.23847	NM_001081088	ENSMUSG00000027070	Lrp2	AI315343|AW536255|D230004K18Rik|Gp330|Megalin|b2b1625.2Clo	low density lipoprotein receptor-related protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56762190-4	chr17	56761665	56762665	+	999.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2586.0	NM_001360405	224907.0	Mm.293973	NM_144858	ENSMUSG00000007603	Dus3l	AI662135|AW557805	dihydrouridine synthase 3-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-42376372-4	chr6	42375894	42376894	+	999.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045169, intron 2 of 3)	intron (NR_045169, intron 2 of 3)	-3126.0	NM_023580	13835.0	Mm.133330	NM_023580	ENSMUSG00000029859	Epha1	5730453L17Rik|AL033318|Eph|Esk	Eph receptor A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66038415-4	chr5	66037929	66038929	+	999.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 3 of 6)	intron (NM_139065, intron 3 of 6)	-34144.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66304147-4	chr7	66303640	66304640	+	999.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 10 of 33)	intron (NM_146191, intron 10 of 33)	77584.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126109798-4	chr4	126109267	126110267	+	999.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 1 of 10)	intron (NM_028800, intron 1 of 10)	5810.0	NM_001145827	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-101075462-4	chr9	101074973	101075973	+	999.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001100451, intron 1 of 1)	CpG	711.0	NM_001100451	77853.0	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	MSL complex subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45981215-4	chr4	45980704	45981704	+	999.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355189, intron 1 of 16)	intron (NM_001355189, intron 1 of 16)	8373.0	NM_001355189	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95292176-4	chr11	95291675	95292675	+	999.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195003, intron 5 of 14)	intron (NM_001195003, intron 5 of 14)	18071.0	NM_001195004	217127.0	Mm.90213	NM_177619	ENSMUSG00000038909	Kat7	Hbo1|Hboa|Myst2	K(lysine) acetyltransferase 7	protein-coding	6.0	12.5	11.0	3.0	4.5	7.5
Merged-chr2-93459482-4	chr2	93459004	93460004	+	999.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040532, intron 2 of 4)	intron (NR_040532, intron 2 of 4)	2347.0	NM_001271461	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	18.0	50.5	41.5	13.0	42.5	28.0
Merged-chr17-69384030-11	chr17	69383533	69384533	+	999.4545289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009547, exon 1 of 3)	5' UTR (NM_009547, exon 1 of 3)	229.0	NM_009547	22666.0	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108578713-4	chr9	108578215	108579215	+	999.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031392)	promoter-TSS (NM_031392)	-45.0	NM_031392	83669.0	Mm.335454	NM_031392	ENSMUSG00000066357	Wdr6	mWDR6	WD repeat domain 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83637878-4	chr6	83637380	83638380	+	999.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	18236.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	56.5	90.5	90.5	38.5	107.0	72.5
Merged-chr10-43042952-4	chr10	43042448	43043448	+	999.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175407, intron 5 of 6)	LTR40A1|LTR|ERVL	-51786.0	NR_153349	327749.0	Mm.428887	NR_153349		Gm5079	C230040G06	predicted gene 5079	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118256801-5	chr2	118256302	118257302	+	999.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027759, exon 1 of 11)	5' UTR (NM_027759, exon 1 of 11)	164.0	NM_027759	71313.0	Mm.85046	NM_027759	ENSMUSG00000027344	Fsip1	1700012M13Rik|4933432K11Rik	fibrous sheath-interacting protein 1	protein-coding	12.0	0.0	8.5	0.0	0.0	1.0
Merged-chr17-23979701-4	chr17	23979201	23980201	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4471.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	67.0	138.0	65.5	19.5	89.0	33.0
Merged-chr1-171410373-4	chr1	171409860	171410860	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305677)	promoter-TSS (NM_001305677)	-953.0	NM_001305678	22278.0	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	31.5	129.0	62.0	52.5	150.0	76.0
Merged-chr18-67933981-4	chr18	67933460	67934460	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	CpG	787.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	10.0	14.0	22.5	23.0	20.5	24.0
Merged-chr3-55978535-4	chr3	55978037	55979037	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030595, intron 30 of 57)	L2|LINE|L2	131432.0	NR_033592	71182.0	Mm.195603	NR_033592	ENSMUSG00000106572	4933417G07Rik	-	SEC13 homolog pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88460154-6	chr3	88459641	88460641	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163489, intron 1 of 14)	intron (NM_001163489, intron 1 of 14)	-1040.0	NM_001163490	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127008897-4	chr7	127008401	127009401	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080638, intron 1 of 14)	intron (NM_080638, intron 1 of 14)	5693.0	NM_080638	78388.0	Mm.228797	NM_080638	ENSMUSG00000030681	Mvp	2310009M24Rik|LRP|VAULT1	major vault protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-21536268-4	chr17	21535760	21536760	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131123)	promoter-TSS (NR_131123)	-382.0	NR_131123	319870.0	Mm.488274	NR_131123	ENSMUSG00000097781	9330136K24Rik	-	RIKEN cDNA 9330136K24 gene	ncRNA	7.5	26.5	24.0	5.0	33.5	24.0
Merged-chr11-100356252-4	chr11	100355764	100356764	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177981)	promoter-TSS (NM_177981)	-123.0	NM_010404	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95546975-4	chr9	95546553	95547553	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12764.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-61084665-4	chr19	61084160	61085160	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 12 of 15)	intron (NM_018869, intron 12 of 15)	56180.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	10.5	8.0	19.5	1.5	12.5	18.0
Merged-chr6-148539033-4	chr6	148538517	148539517	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75292.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-148990069-4	chr6	148989569	148990569	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177192, exon 21 of 21)	3' UTR (NM_177192, exon 21 of 21)	-43599.0	NM_001361398	56306.0	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Sinhcaf|Tera	family with sequence similarity 60, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66088886-4	chr5	66088393	66089393	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	9286.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	57.5	186.0	105.0	27.0	89.5	58.5
Merged-chr5-9111937-4	chr5	9111405	9112405	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081029, intron 2 of 4)	intron (NM_001081029, intron 2 of 4)	11168.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56031136-4	chr17	56030627	56031627	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013664, intron 1 of 9)	intron (NM_013664, intron 1 of 9)	5510.0	NM_013664	20405.0	Mm.1773	NM_013664	ENSMUSG00000003200	Sh3gl1	C77078|EEN|SH3P8|Sh3d2b	SH3-domain GRB2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21549698-4	chr13	21549215	21550215	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	6305.0	NM_207572	404335.0	Mm.377341	NM_207572	ENSMUSG00000054890	Olfr1535	MOR256-36|MOR256-63|Olfr1365	olfactory receptor 1535	protein-coding	2.0	22.5	18.5	14.5	11.0	5.5
Merged-chr14-72709387-2	chr14	72708887	72709887	+	999.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 1 of 25)	CpG	616.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135918988-7	chr4	135918486	135919486	+	999.4127199999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009924, exon 2 of 2)	3' UTR (NM_009924, exon 2 of 2)	-1740.0	NM_024243	71665.0	Mm.439940	NM_024243	ENSMUSG00000028673	Fuca1	0610006A03Rik|9530055J05Rik|Afuc|Fuca	fucosidase, alpha-L- 1, tissue	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68458322-4	chr11	68458001	68459001	+	999.392822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	26376.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170155644-4	chr2	170155136	170156136	+	999.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12961.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106614451-4	chr11	106613954	106614954	+	999.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1524.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11459230-4	chr8	11458725	11459725	+	999.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-18704.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170324912-4	chr2	170324412	170325412	+	999.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-31449.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128166349-4	chr8	128165851	128166851	+	999.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111874.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4396544-4	chr19	4396061	4397061	+	999.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001001984, exon 1 of 21)	5' UTR (NM_001001984, exon 1 of 21)	516.0	NM_001001984	225876.0	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	38.5	58.5	50.0	58.0	91.0	60.0
Merged-chr4-141541026-4	chr4	141540521	141541521	+	999.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2424.0	NM_019763	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	69.5	198.5	126.5	82.5	200.0	101.0
Merged-chr10-89745711-6	chr10	89745177	89746177	+	999.357178	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029166, intron 1 of 20)	CpG	686.0	NM_029166	75089.0	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	2.5	19.0	10.5	2.0	38.5	17.5
Merged-chr10-7745442-2	chr10	7744942	7745942	+	999.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011835, intron 4 of 10)	intron (NM_011835, intron 4 of 10)	19442.0	NM_011835	23924.0	Mm.28127	NM_011835	ENSMUSG00000019794	Katna1	-	katanin p60 (ATPase-containing) subunit A1	protein-coding	0.0	0.0	0.0	0.0	11.5	0.0
Merged-chr2-30470699-2	chr2	30470199	30471199	+	999.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3500.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	0.0	0.5	1.5	1.5	0.5	1.5
Merged-chr12-102366712-2	chr12	102366212	102367212	+	999.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 5 of 9)	intron (NM_177620, intron 5 of 9)	73101.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-137946674-2	chr3	137946174	137947174	+	999.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 4 of 8)	intron (NM_011932, intron 4 of 8)	28119.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55951183-4	chr16	55950733	55951733	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME2z|LINE|L1	-15042.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-56293450-4	chr8	56292950	56293950	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1102.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60865172-4	chr2	60864666	60865666	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	16272.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122645193-2	chr14	122644693	122645693	+	999.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 8 of 24)	RLTR51A_Mm|LTR|ERVK?	110865.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104794132-4	chr3	104793641	104794641	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008619)	TTS (NM_008619)	5107.0	NM_001291859	11853.0	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65507034-3	chr18	65506523	65507523	+	999.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	-73207.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	16.5	35.0	6.0	31.0	51.5	56.0
Merged-chr11-34827992-4	chr11	34827504	34828504	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027411, intron 2 of 11)	Lx7|LINE|L1	5637.0	NM_027411	70385.0	Mm.194368	NM_027411	ENSMUSG00000069910	Spdl1	1700018I02Rik|2600001J17Rik|2810049B11Rik|AA409762|Ccdc99	spindle apparatus coiled-coil protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50261765-4	chr6	50261300	50262300	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018769)	promoter-TSS (NM_018769)	-31.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76328945-4	chr14	76328439	76329439	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77477.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80114765-4	chr7	80114306	80115306	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173011, intron 1 of 10)	intron (NM_173011, intron 1 of 10)	544.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157153429-4	chr2	157152943	157153943	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011249, intron 19 of 21)	intron (NM_011249, intron 19 of 21)	-18221.0	NM_018851	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-97105587-4	chr9	97105089	97106089	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138756, intron 1 of 6)	intron (NM_138756, intron 1 of 6)	5452.0	NM_138756	192287.0	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30155208-3	chr16	30154703	30155703	+	999.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89846.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr9-69109844-3	chr9	69109328	69110328	+	999.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013646, intron 1 of 10)	intron (NM_013646, intron 1 of 10)	-180013.0	NM_001289916	19883.0	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	1.0	0.0	0.0	2.5	0.0	0.0
Merged-chr10-15215005-3	chr10	15214505	15215505	+	999.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	454716.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74939475-4	chr15	74938987	74939987	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-15564.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	32.5	145.5	105.0	83.0	213.0	150.0
Merged-chr14-43922327-4	chr14	43921805	43922805	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_053112)	TTS (NM_053112)	1063.0	NM_053112	93725.0	Mm.429087	NM_053112	ENSMUSG00000090166	Ear10	Raf2	eosinophil-associated, ribonuclease A family, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-81987147-4	chr6	81986662	81987662	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR3|LTR|Gypsy	-21213.0	NM_026490	56284.0	Mm.276293	NM_026490	ENSMUSG00000030045	Mrpl19	9030416F12Rik|9130412E02Rik|D6Ertd157e|MRP-L15|RLX1|Rpml15	mitochondrial ribosomal protein L19	protein-coding	0.0	9.0	6.5	6.0	11.0	0.0
Merged-chr10-108140931-4	chr10	108140414	108141414	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21486.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5440547-8	chr17	5440059	5441059	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027457)	promoter-TSS (NM_027457)	-299.0	NM_027457	70544.0	Mm.46654	NM_027457	ENSMUSG00000004945	Tmem242	1110008A10Rik|2310046K16Rik|5730437N04Rik	transmembrane protein 242	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128338709-4	chr2	128338220	128339220	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028590, intron 1 of 2)	intron (NR_028590, intron 1 of 2)	90631.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	18.5	74.5	67.5	71.5	94.5	63.0
Merged-chr12-79755274-3	chr12	79754769	79755769	+	999.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 8 of 10)	intron (NM_009014, intron 8 of 10)	169464.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111471336-4	chr12	111470823	111471823	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	14500.0	NM_001033248	212539.0	Mm.81916	NM_001033248	ENSMUSG00000010529	Gm266	-	predicted gene 266	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80554709-4	chr18	80554125	80555125	+	999.3214109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10079.0	NR_028424	100039348.0	Mm.254722	NR_028424		Gm2176	A430076E10Rik	glucosamine-6-phosphate deaminase 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr3-95024671-2	chr3	95024171	95025171	+	999.3000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-9214.0	NM_001357863	78266.0	Mm.389478	NM_030074	ENSMUSG00000019338	Zfp687	4931408L03Rik|Znf687|mKIAA1441	zinc finger protein 687	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57926144-4	chr15	57925620	57926620	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356310, intron 3 of 19)	RSINE1|SINE|B4	13921.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107713613-4	chr9	107713117	107714117	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3142.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	0.0	4.0	5.0	0.0	4.5	2.5
Merged-chr2-94389189-4	chr2	94388680	94389680	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183106, intron 1 of 24)	intron (NM_183106, intron 1 of 24)	17509.0	NM_183106	74569.0	Mm.248504	NM_183106	ENSMUSG00000027194	Ttc17	9130020K17Rik|D2Bwg1005e	tetratricopeptide repeat domain 17	protein-coding	0.0	1.0	1.5	1.0	1.5	2.0
Merged-chr1-154074267-4	chr1	154073777	154074777	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126910.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55654612-4	chr19	55654129	55655129	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	(A)n|Simple_repeat|Simple_repeat	47575.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-45331037-4	chr8	45330523	45331523	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133969, intron 1 of 10)	intron (NM_133969, intron 1 of 10)	2173.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22861682-4	chr8	22861188	22862188	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081149, intron 2 of 17)	intron (NM_001081149, intron 2 of 17)	2149.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10948399-4	chr19	10947925	10948925	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023731, exon 1 of 4)	exon (NM_023731, exon 1 of 4)	841.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51093642-4	chr14	51093142	51094142	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021472, intron 1 of 1)	intron (NM_021472, intron 1 of 1)	-2358.0	NM_007447	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	38.0	75.0	45.0	20.5	75.5	29.0
Merged-chr6-29474619-4	chr6	29474102	29475102	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3165.0	NM_001145360	668210.0	Mm.420607	NM_001145360	ENSMUSG00000090685	Gm9047	EG668210	predicted gene 9047	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41665697-4	chr10	41665175	41666175	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 10 of 47)	L1MB2|LINE|L1	50788.0	NM_001358562	75973.0	Mm.228517	NM_029493	ENSMUSG00000075225	Ccdc162	5033413D22Rik|Ccdc162p|Gm29096|Gm61|Gm6976	coiled-coil domain containing 162	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-91284144-4	chr17	91283640	91284640	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-191338.0	NM_020252	18189.0	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	18.5	18.5	11.5	16.5	14.0	11.0
Merged-chr12-105031522-4	chr12	105031077	105032077	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028576)	promoter-TSS (NR_028576)	-228.0	NR_028576	100306943.0		NR_028576	ENSMUSG00000088789	Scarna13	U93	small Cajal body-specific RNA 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104602903-4	chr8	104602429	104603429	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252628, intron 17 of 17)	intron (NM_001252628, intron 17 of 17)	11461.0	NM_001024606	382051.0	Mm.290750	NM_001024606	ENSMUSG00000048371	Pdp2	4833426J09Rik|Gm1705|mKIAA1348	pyruvate dehyrogenase phosphatase catalytic subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61684323-4	chr11	61683811	61684811	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178618)	promoter-TSS (NM_178618)	-99.0	NM_178618	69640.0	Mm.458559	NM_178618	ENSMUSG00000042377	Fam83g	2310040C09Rik|AI506990|wly	family with sequence similarity 83, member G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163764568-3	chr2	163764082	163765082	+	999.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14343.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	16.0	16.0	17.5	158.0	262.5	261.5
Merged-chr13-75992876-3	chr13	75992376	75993376	+	999.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029343, intron 3 of 4)	intron (NM_029343, intron 3 of 4)	25137.0	NM_029343	75571.0	Mm.443291	NM_029343	ENSMUSG00000021590	Spata9	1700030K01Rik|4930599C08Rik|A930023H06Rik	spermatogenesis associated 9	protein-coding	10.5	37.5	18.5	14.0	36.5	17.0
Merged-chr6-88033707-4	chr6	88033205	88034205	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293652, intron 1 of 7)	intron (NM_001293652, intron 1 of 7)	11312.0	NM_001293653	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	10.5	19.0	13.0	0.0	8.5	11.0
Merged-chr2-118307811-4	chr2	118307312	118308312	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045919, intron 2 of 2)	intron (NR_045919, intron 2 of 2)	2898.0	NR_045919	73358.0	Mm.437192	NR_045919	ENSMUSG00000085889	1700054M17Rik	-	RIKEN cDNA 1700054M17 gene	ncRNA	1.0	5.0	1.0	1.5	3.5	3.5
Merged-chr13-76056439-4	chr13	76055924	76056924	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175495, exon 1 of 1)	exon (NM_175495, exon 1 of 1)	572.0	NM_175495	238725.0	Mm.167172	NM_175495	ENSMUSG00000045509	Gpr150	C030001A19Rik|PGR11	G protein-coupled receptor 150	protein-coding	2.0	0.0	1.0	4.5	6.5	0.0
Merged-chr15-97195896-4	chr15	97195405	97196405	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28661.0	NR_155279	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99619637-4	chr10	99619140	99620140	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038019, intron 1 of 2)	intron (NR_038019, intron 1 of 2)	10469.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117373233-2	chr10	117372733	117373733	+	999.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013391, intron 1 of 9)	intron (NM_001013391, intron 1 of 9)	3740.0	NM_001013391	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	0.5	11.5	4.0	0.0	5.5	8.0
Merged-chr12-24831573-4	chr12	24831131	24832131	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083341)	promoter-TSS (NM_001083341)	32.0	NM_001083341	67216.0	Mm.167671	NM_026037	ENSMUSG00000020646	Mboat2	2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2	membrane bound O-acyltransferase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103816796-4	chr14	103816302	103817302	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007904, exon 7 of 7)	3' UTR (NM_007904, exon 7 of 7)	26899.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128194774-2	chr10	128194351	128195351	+	999.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033264, exon 1 of 18)	exon (NM_001033264, exon 1 of 18)	216.0	NM_001285779	216456.0	Mm.30102	NM_001033264	ENSMUSG00000044005	Gls2	A330074B06Rik|AI195532|GA|GLS|Lga	glutaminase 2 (liver, mitochondrial)	protein-coding	2.5	0.0	0.0	0.0	9.0	1.5
Merged-chr9-24505250-4	chr9	24504776	24505776	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2136.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132382515-4	chr4	132382007	132383007	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161797, intron 3 of 12)	intron (NM_001161797, intron 3 of 12)	-28821.0	NR_003270	399101.0	Mm.486919	NR_002904	ENSMUSG00000085241	Snhg3	Rnu17d|U17HG	small nucleolar RNA host gene 3	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-114787928-4	chr9	114787419	114788419	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5926.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	63.0	186.5	130.0	24.0	72.5	30.5
Merged-chr18-65497147-4	chr18	65496637	65497637	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	66140.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	8.0	17.0	12.0	31.0	112.5	37.0
Merged-chr11-34034965-4	chr11	34034460	34035460	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	MIRc|SINE|MIR	-11968.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-118098891-3	chr4	118098392	118099392	+	999.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285520, intron 2 of 11)	Charlie20a|DNA|hAT-Charlie	36054.0	NM_001285520	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	7.0	0.0	0.5	12.5	6.5	18.0
Merged-chr6-119358304-3	chr6	119357793	119358793	+	999.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355692, intron 6 of 7)	intron (NM_001355692, intron 6 of 7)	-27527.0	NM_172492	211187.0	Mm.121498	NM_172492	ENSMUSG00000055003	Lrtm2	A230084J22|AI841794	leucine-rich repeats and transmembrane domains 2	protein-coding	6.5	0.5	1.5	0.0	2.0	2.5
Merged-chr9-61242337-4	chr9	61241836	61242836	+	999.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51473.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-85654038-4	chr15	85653592	85654592	+	999.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49681.0	NR_110483	102800312.0	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	24.0	42.5	41.0	22.5	53.5	48.0
Merged-chr4-126815076-4	chr4	126814561	126815561	+	999.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035525, intron 4 of 23)	intron (NM_001035525, intron 4 of 23)	61291.0	NM_001035526	100317.0	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11705303-4	chr2	11704790	11705790	+	999.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133836)	promoter-TSS (NM_133836)	-3.0	NM_001271498	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120629579-4	chr11	120629077	120630077	+	999.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010756, exon 3 of 3)	exon (NM_010756, exon 3 of 3)	3970.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45953574-4	chr9	45953058	45954058	+	999.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152206)	promoter-TSS (NR_152206)	-428.0	NR_152206	100101457.0	Mm.397964	NR_152206	ENSMUSG00000111329	A830035O19Rik	-	RIKEN cDNA A830035O19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-106560275-4	chr3	106559771	106560771	+	999.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025582, intron 3 of 6)	B1F|SINE|Alu	-12469.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60877458-4	chr13	60876957	60877957	+	999.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-13041.0	NM_178098	214639.0	Mm.19839	NM_178098	ENSMUSG00000050345	4930486L24Rik	AW545031	RIKEN cDNA 4930486L24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32924865-4	chr17	32924350	32925350	+	999.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_130882, exon 13 of 13)	exon (NM_130882, exon 13 of 13)	-7494.0	NM_001357788	64385.0	Mm.486449	NM_022434	ENSMUSG00000024292	Cyp4f14	1300014O15Rik|cyp4f-14	cytochrome P450, family 4, subfamily f, polypeptide 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3780492-4	chr12	3779994	3780994	+	999.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007886, intron 18 of 18)	intron (NM_007886, intron 18 of 18)	-26486.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12058614-6	chr13	12058114	12059114	+	999.194458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023868, intron 1 of 104)	intron (NM_023868, intron 1 of 104)	48331.0	NM_023868	20191.0	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59165873-4	chr11	59165387	59166387	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2142.0	NM_173785	216792.0	Mm.266175	NM_173785	ENSMUSG00000049287	Iba57	4930543L23Rik|A230051G13Rik|C1orf69	IBA57 homolog, iron-sulfur cluster assembly	protein-coding	20.5	53.0	18.5	18.5	55.0	33.0
Merged-chr6-50378668-4	chr6	50378163	50379163	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163645, intron 2 of 21)	intron (NM_001163645, intron 2 of 21)	4174.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	28.0	53.5	48.0	22.5	45.5	40.5
Merged-chr6-38535264-4	chr6	38534784	38535784	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025363, intron 1 of 1)	intron (NM_025363, intron 1 of 1)	423.0	NM_025363	66117.0	Mm.158971	NM_025363	ENSMUSG00000019689	Fmc1	1110001J03Rik	formation of mitochondrial complex V assembly factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-108268020-4	chr13	108267515	108268515	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029001, intron 3 of 7)	intron (NM_029001, intron 3 of 7)	-48322.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	0.0	12.5	0.5	0.5	0.0	2.5
Merged-chr7-130943400-4	chr7	130942890	130943890	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019564, intron 1 of 8)	intron (NM_019564, intron 1 of 8)	7187.0	NM_019564	56213.0	Mm.30156	NM_019564	ENSMUSG00000006205	Htra1	AI429470|HTRA|L56|Prss11|RSPP11	HtrA serine peptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-142712953-4	chr2	142712468	142713468	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081133, exon 19 of 26)	exon (NM_001081133, exon 19 of 26)	188496.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191910797-4	chr1	191910284	191911284	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009579, exon 2 of 2)	3' UTR (NM_009579, exon 2 of 2)	-3257.0	NR_030669	98736.0	Mm.379232	NM_001024489	ENSMUSG00000055833	1700034H15Rik	4930557M11Rik|BB016121	RIKEN cDNA 1700034H15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21049564-4	chr14	21049075	21050075	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018829, intron 1 of 8)	intron (NM_018829, intron 1 of 8)	2867.0	NM_018829	55946.0	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	26.0	41.0	19.0	28.0	45.5	19.5
Merged-chr13-55727455-4	chr13	55726937	55727937	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028281)	promoter-TSS (NM_028281)	69.0	NM_028281	72562.0	Mm.28145	NM_028281	ENSMUSG00000021496	Pcbd2	2700061N24Rik|Dcoh2|Dcohm	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2	protein-coding	4.5	20.5	34.0	11.5	29.5	19.0
Merged-chr8-116732954-10	chr8	116732364	116733364	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_029441, exon 1 of 7)	5' UTR (NM_029441, exon 1 of 7)	127.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98085576-4	chr7	98085073	98086073	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008663, intron 15 of 48)	intron (NM_008663, intron 15 of 48)	23675.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	37.0	63.0	41.0	30.0	82.0	76.0
Merged-chr6-137409617-2	chr6	137409117	137410117	+	999.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 12 of 26)	intron (NM_011216, intron 12 of 26)	-1104.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8629444-4	chr15	8628989	8629989	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81318.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98660664-4	chr11	98660152	98661152	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3699.0	NM_021347	57911.0	Mm.458085	NM_021347	ENSMUSG00000017204	Gsdma	BB149167|Gsdm|Gsdm1|Gsdma1|H312E	gasdermin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181289241-4	chr2	181288746	181289746	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-1280.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35314743-2	chr17	35314243	35315243	+	999.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	-5804.0	NM_010390	15006.0	Mm.466882	NM_010390	ENSMUSG00000079507	H2-Q1	H-2Q1|Q1|Q1b|Q1d|Q1k|Qa-1|Qa1|Qed-1	histocompatibility 2, Q region locus 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84082942-2	chr17	84082442	84083442	+	999.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_045458, intron 2 of 5)	intron (NR_045458, intron 2 of 5)	4282.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60381408-4	chr18	60380903	60381903	+	999.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021792, intron 2 of 2)	MTC|LTR|ERVL-MaLR	5374.0	NM_001146275	60440.0	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115490772-2	chr5	115490279	115491279	+	999.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-6295.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	32.5	31.5	28.0	25.5	64.5	52.5
Merged-chr15-84941652-2	chr15	84941152	84942152	+	999.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016714, exon 8 of 8)	3' UTR (NM_016714, exon 8 of 8)	9971.0	NR_037206	100526461.0		NR_037206	ENSMUSG00000080441	Mir1249	mir-1249|mmu-mir-1249	microRNA 1249	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30510875-5	chr16	30510527	30511527	+	999.159973	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172614)	TTS (NM_172614)	39551.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	122.0	288.0	200.5	203.0	387.0	296.0
Merged-chr7-24299541-4	chr7	24299060	24300060	+	999.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009561)	promoter-TSS (NM_009561)	-11.0	NM_009561	22719.0	Mm.12832	NM_009561	ENSMUSG00000050605	Zfp61	-	zinc finger protein 61	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127206834-4	chr7	127206340	127207340	+	999.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144522, intron 1 of 8)	intron (NM_144522, intron 1 of 8)	1628.0	NM_144522	68449.0	Mm.41420	NM_144522	ENSMUSG00000042492	Tbc1d10b	1110003P22Rik|C87963	TBC1 domain family, member 10b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-81044077-4	chr5	81043583	81044583	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198702, intron 1 of 27)	L1MA5|LINE|L1	22490.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	9.5	34.0	26.5	15.0	60.0	25.0
Merged-chr4-43499656-4	chr4	43499156	43500156	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001013377, exon 4 of 12)	5' UTR (NM_001013377, exon 4 of 12)	6291.0	NM_001037913	622404.0	Mm.289109	NM_001037913	ENSMUSG00000028461	Ccdc107	-	coiled-coil domain containing 107	protein-coding	0.5	10.0	13.5	0.5	4.5	9.5
Merged-chr1-148904286-4	chr1	148903780	148904780	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1018159.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9495166-4	chr18	9494678	9495678	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-45024.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	2.5	2.5	0.0	2.0	3.0	2.5
Merged-chr9-65827757-4	chr9	65827278	65828278	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172536)	promoter-TSS (NM_172536)	-214.0	NM_172536	214812.0	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-16870975-4	chr12	16870454	16871454	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24024.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	65.5	103.5	55.5	92.0	257.0	160.5
Merged-chr15-86161125-4	chr15	86160619	86161619	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 3 of 12)	L1M4|LINE|L1	-24609.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	21.0	12.5	30.0	16.0	22.5	29.0
Merged-chr17-69157548-4	chr17	69157021	69158021	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013813, intron 1 of 21)	CpG	777.0	NM_013813	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-117736180-4	chr12	117735673	117736673	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 22 of 27)	RLTR42-int|LTR|ERVK	-107688.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	3.5	0.0	2.0	0.0	1.5	1.5
Merged-chr3-78919674-4	chr3	78919181	78920181	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	225206.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	1.0	0.0	2.5	0.0	0.0	2.5
Merged-chr6-88813090-4	chr6	88812590	88813590	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166249, intron 5 of 7)	intron (NM_001166249, intron 5 of 7)	28845.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51365484-4	chr3	51364989	51365989	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-24845.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-63422838-4	chr17	63422345	63423345	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 4 of 8)	intron (NM_015794, intron 4 of 8)	77735.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-69898303-9	chr2	69897704	69898704	+	999.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177783, intron 1 of 38)	intron (NM_177783, intron 1 of 38)	958.0	NM_177783	68795.0	Mm.314576	NM_177783	ENSMUSG00000044308	Ubr3	1110059H15Rik|4833421P10Rik|A130030D10Rik|AA409735|AA414972|AA422631|AI646861|AU016126|Zfp650|Znf650	ubiquitin protein ligase E3 component n-recognin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64057163-4	chr15	64056682	64057682	+	999.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	2582.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-94688664-4	chr15	94688172	94689172	+	999.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178789, intron 2 of 7)	intron (NM_178789, intron 2 of 7)	59487.0	NM_178789	320709.0	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130853531-4	chr5	130853051	130854051	+	999.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	404759.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32478919-4	chr9	32478461	32479461	+	999.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	62491.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-115985646-4	chr3	115985133	115986133	+	999.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023214, intron 5 of 10)	intron (NM_023214, intron 5 of 10)	5731.0	NR_130332	100316705.0		NR_130332	ENSMUSG00000089261	Mir669n	mmu-mir-669n	microRNA 669n	ncRNA	14.5	68.5	32.5	29.5	34.0	34.0
Merged-chr3-137865208-4	chr3	137864704	137865704	+	999.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001316995, exon 2 of 5)	exon (NM_001316995, exon 2 of 5)	717.0	NM_016750	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	5.5	5.5	2.5	6.5	11.0	2.5
Merged-chr5-43915416-4	chr5	43914924	43915924	+	999.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	46615.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	12.5	2.5	3.5	14.5	5.0	4.5
Merged-chr10-75667593-10	chr10	75667141	75668141	+	999.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172549, intron 29 of 36)	CpG	-23633.0	NM_027890	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106461356-4	chr11	106460846	106461846	+	999.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 1 of 21)	(CA)n|Simple_repeat|Simple_repeat	26450.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128843788-4	chr6	128843262	128844262	+	999.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17447.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	7.5	12.5	12.0	6.0	7.5	6.0
Merged-chr17-35170985-4	chr17	35170476	35171476	+	999.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001361501)	TTS (NM_001361501)	5076.0	NM_019467	11629.0	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	3.0	4.5	8.0	2.0	25.0	7.5
Merged-chr12-106658445-4	chr12	106657952	106658952	+	999.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57872.0	NR_015512	71033.0	Mm.159404	NR_015512	ENSMUSG00000085820	4933406K04Rik	4930426M03Rik|4930485I22Rik|4933427G14Rik	RIKEN cDNA 4933406K04 gene	ncRNA	0.0	0.5	1.0	4.5	9.5	3.5
Merged-chr15-27659784-4	chr15	27659273	27660273	+	999.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 5 of 6)	intron (NM_198301, intron 5 of 6)	21769.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123940833-4	chr9	123940329	123941329	+	999.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	27863.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-57651712-4	chr3	57651204	57652204	+	999.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175095)	promoter-TSS (NM_175095)	-20.0	NM_175095	52245.0	Mm.21901	NM_175095	ENSMUSG00000036513	Commd2	1190017G07Rik|AI047739|D3Ertd176e|HSPC042	COMM domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-70420452-4	chr18	70419876	70420876	+	999.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52078.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	2.5	20.0	4.5	2.0	8.5	2.0
Merged-chr10-53876126-4	chr10	53875602	53876602	+	999.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-125193.0	NM_001081428	75906.0	Mm.436785	NM_001081428	ENSMUSG00000019856	Fam184a	3110012E06Rik|4930438C08Rik|4930589M24Rik	family with sequence similarity 184, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100197161-4	chr13	100196656	100197656	+	999.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126182, intron 1 of 15)	intron (NM_001126182, intron 1 of 15)	4966.0	NM_001126182	17948.0	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-18958119-4	chr7	18957607	18958607	+	999.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001029877, exon 4 of 4)	exon (NM_001029877, exon 4 of 4)	-29417.0	NM_194064	378430.0	Mm.277153	NM_194064	ENSMUSG00000051965	Nanos2	nos2	nanos C2HC-type zinc finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-12963592-4	chr10	12963070	12964070	+	999.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029075, intron 1 of 2)	intron (NM_029075, intron 1 of 2)	689.0	NM_029075	74732.0	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-62645612-4	chr2	62645117	62646117	+	999.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027835, exon 1 of 16)	exon (NM_027835, exon 1 of 16)	638.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32940632-4	chr9	32940108	32941108	+	999.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11642.0	NR_131058	330917.0	Mm.488283	NR_131058		Gm27162	A430016B06	predicted gene 27162	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45155099-4	chr7	45154614	45155614	+	999.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285904)	promoter-TSS (NM_001285904)	-576.0	NM_145954	69748.0	Mm.82139	NM_145954	ENSMUSG00000007833	Aldh16a1	2410004H02Rik|AI452234|mFLJ00209	aldehyde dehydrogenase 16 family, member A1	protein-coding	25.5	66.0	36.5	25.5	62.5	34.0
Merged-chr6-120818851-2	chr6	120818343	120819343	+	999.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007510, intron 1 of 8)	intron (NM_007510, intron 1 of 8)	3855.0	NM_007510	11973.0	Mm.29045	NM_007510	ENSMUSG00000019210	Atp6v1e1	2410029D23Rik|Atp6e|Atp6e2|Atp6v1e|D6Ertd385e|Vma4|p31	ATPase, H+ transporting, lysosomal V1 subunit E1	protein-coding	0.0	0.0	2.5	0.0	0.0	1.0
Merged-chr1-106371815-1	chr1	106371315	106372315	+	999.0	f0_balb.idr	intron (NM_133821, intron 12 of 16)	intron (NM_133821, intron 12 of 16)	174816.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128803904-2	chr4	128803404	128804404	+	999.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081098, intron 1 of 8)	intron (NM_001081098, intron 1 of 8)	2208.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21288319-3	chr11	21287815	21288815	+	999.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290628, intron 7 of 22)	B2_Mm1t|SINE|B2	49283.0	NM_001290628	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	5.0	2.5	2.0	10.0	9.5	10.0
Merged-chr1-36474613-2	chr1	36474113	36475113	+	999.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033570, intron 1 of 6)	intron (NM_033570, intron 1 of 6)	3016.0	NM_033570	94220.0	Mm.422638	NM_033570	ENSMUSG00000037408	Cnnm4	5430430O18Rik|Acdp4	cyclin M4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-93951167-2	chr13	93950667	93951667	+	999.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106629.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95681507-4	chr9	95681044	95682044	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029620, exon 5 of 9)	exon (NM_029620, exon 5 of 9)	43916.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	18.5	47.0	28.0	19.5	43.5	27.5
Merged-chr7-31112994-2	chr7	31112494	31113494	+	999.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110252, intron 2 of 13)	BC1_Mm|scRNA|scRNA	-1997.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-53989349-2	chr9	53988849	53989849	+	999.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-14048.0	NM_177769	270162.0	Mm.259791	NM_177769	ENSMUSG00000041986	Elmod1	4831417L10|AI428506|AI834991	ELMO/CED-12 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97660164-2	chr3	97659664	97660664	+	999.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_182997, intron 2 of 7)	intron (NM_182997, intron 2 of 7)	1952.0	NM_182997	108097.0	Mm.31175	NM_182997	ENSMUSG00000038205	Prkab2	5730553K21Rik|AW049591|BB124140	protein kinase, AMP-activated, beta 2 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120522476-2	chr11	120521976	120522976	+	999.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8251.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-19685853-2	chr6	19685353	19686353	+	999.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	130511.0	NR_105789	102465192.0		NR_105789	ENSMUSG00000099149	Mir6370	Gm27480|mmu-mir-6370	microRNA 6370	ncRNA	0.0	0.5	0.0	0.0	0.5	0.0
Merged-chr12-91793568-2	chr12	91793068	91794068	+	999.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7132.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56727357-4	chr19	56726843	56727843	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4971.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-99386064-4	chr11	99385544	99386544	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010660, exon 7 of 8)	exon (NM_010660, exon 7 of 8)	3320.0	NM_010660	16661.0	Mm.22662	NM_010660	ENSMUSG00000019761	Krt10	D130054E02Rik|K10|K1C1|Krt-1.10|Krt1-10	keratin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-118413570-4	chr5	118413069	118414069	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	-147150.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.0	1.0	0.0	0.0	1.0	0.0
Merged-chr16-25794590-2	chr16	25794090	25795090	+	999.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127259, intron 3 of 13)	intron (NM_001127259, intron 3 of 13)	-7326.0	NM_001127263	22061.0	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44607948-2	chr10	44607448	44608448	+	999.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2C1|LTR|ERVL	-149200.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84627429-4	chr2	84626938	84627938	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007615, intron 1 of 19)	intron (NM_007615, intron 1 of 19)	22042.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	18.0	72.0	21.0	14.0	14.0	9.0
Merged-chr19-4192902-2	chr19	4192402	4193402	+	999.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031868, intron 2 of 6)	intron (NM_031868, intron 2 of 6)	728.0	NM_031868	19045.0	Mm.1970	NM_031868	ENSMUSG00000040385	Ppp1ca	Ppp1c|dism2	protein phosphatase 1, catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70970960-2	chr12	70970460	70971460	+	999.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3663.0	NM_001310595	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115072814-2	chr11	115072314	115073314	+	999.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10775.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129199895-2	chr2	129199395	129200395	+	999.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001159593, exon 2 of 6)	exon (NM_001159593, exon 2 of 6)	1122.0	NM_001159593	20515.0	Mm.272675	NM_015747	ENSMUSG00000027397	Slc20a1	AI607883|Glvr-1|Glvr1	solute carrier family 20, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-36330829-4	chr3	36330326	36331326	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-108551.0	NM_198192	229214.0	Mm.330975	NM_198192	ENSMUSG00000058400	Qrfpr	AQ27|Gpr103|SP9155	pyroglutamylated RFamide peptide receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-55507749-2	chr6	55507249	55508249	+	999.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	55771.0	NM_007407	11517.0	Mm.44245	NM_007407	ENSMUSG00000029778	Adcyap1r1	2900024I10Rik|AI846590|PAC1|PAC1R|PACAP1-R	adenylate cyclase activating polypeptide 1 receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-21997542-4	chr3	21997015	21998015	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-79137.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102672714-2	chr15	102672214	102673214	+	999.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030460)	promoter-TSS (NR_030460)	-848.0	NR_030460	751542.0		NR_030460	ENSMUSG00000076009	Mir688	Mirn688|mmu-mir-688	microRNA 688	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136031445-4	chr4	136030930	136031930	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9781.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	88.0	228.5	113.0	77.0	172.0	123.5
Merged-chr15-82942222-3	chr15	82941712	82942712	+	999.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17084.0	NR_037241	100526477.0		NR_037241	ENSMUSG00000092751	Mir3080	mmu-mir-3080	microRNA 3080	ncRNA	0.0	0.0	5.0	8.0	0.0	4.5
Merged-chr11-88998127-2	chr11	88997627	88998627	+	999.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-1276.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	7.5	39.5	18.0	25.0	25.0	12.0
Merged-chr8-117048286-2	chr8	117047786	117048786	+	999.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 17 of 42)	intron (NM_029686, intron 17 of 42)	34163.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73880661-4	chr12	73880176	73881176	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20648.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-83555181-4	chr9	83554681	83555681	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	6843.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	12.0	36.5	29.5	14.5	17.5	10.5
Merged-chr10-128082170-4	chr10	128081659	128082659	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1148.0	NM_016774	11947.0	Mm.238973	NM_016774	ENSMUSG00000025393	Atp5b	Atp5f1b	ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	protein-coding	4.0	20.0	20.0	4.5	19.5	18.0
Merged-chr18-16715002-2	chr18	16714502	16715502	+	999.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007664, intron 2 of 15)	intron (NM_007664, intron 2 of 15)	94244.0	NM_007664	12558.0	Mm.257437	NM_007664	ENSMUSG00000024304	Cdh2	CDHN|N-CAD|Ncad	cadherin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28796034-4	chr7	28795495	28796495	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177158, exon 8 of 12)	exon (NM_177158, exon 8 of 12)	7026.0	NM_177158	320435.0	Mm.74632	NM_177158	ENSMUSG00000051735	Rinl	5830482F20Rik|9930116N10Rik	Ras and Rab interactor-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-68784899-4	chr2	68784385	68785385	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76556.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108450144-2	chr6	108449644	108450644	+	999.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-39599.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.5	0.0	0.0	0.0	0.5	1.0
Merged-chr14-21657536-1	chr14	21657036	21658036	+	999.0	f0_balb.idr	intron (NM_017479, intron 12 of 16)	intron (NM_017479, intron 12 of 16)	57040.0	NM_001013826	435391.0	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83528303-2	chr17	83527803	83528803	+	999.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER3|DNA|hAT-Charlie	-13970.0	NM_001159529	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84531835-3	chr2	84531336	84532336	+	999.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-24963.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51812321-2	chr11	51811821	51812821	+	999.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	45160.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140618781-2	chr5	140618223	140619223	+	999.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	11382.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148818406-1	chr5	148817906	148818906	+	999.0	f1_balb.idr	Intergenic	Intergenic	40443.0	NR_131106	78015.0	Mm.243839	NR_131106	ENSMUSG00000085740	4930505K14Rik	-	RIKEN cDNA 4930505K14 gene	ncRNA	3.5	0.0	3.5	0.5	2.0	0.0
Merged-chr17-3083019-5	chr17	3082539	3083539	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003519, intron 1 of 7)	B1_Mus1|SINE|Alu	1144.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	0.5	18.0	2.5	3.5	14.5	10.0
Merged-chr14-54463666-1	chr14	54463166	54464166	+	999.0	f1_c57bl6.idr	promoter-TSS (NM_022993)	promoter-TSS (NM_022993)	-481.0	NM_022993	65107.0	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	1.0	14.0	1.5	4.0	15.5	4.5
Merged-chr7-19397244-2	chr7	19396744	19397744	+	999.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146182, intron 4 of 12)	intron (NM_146182, intron 4 of 12)	2677.0	NM_001286038	232943.0	Mm.213403	NM_146182	ENSMUSG00000040714	Klc3	BC017147|Klct	kinesin light chain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23576167-3	chr13	23575669	23576669	+	999.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178204)	TTS (NM_178204)	406.0	NM_178204	319149.0	Mm.347699	NM_178204	ENSMUSG00000099583	Hist1h3d	H3-b	histone cluster 1, H3d	protein-coding	5.0	11.5	12.0	8.0	28.5	7.5
Merged-chr17-45652006-2	chr17	45651506	45652506	+	999.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013767, intron 3 of 21)	MLT1F1|LTR|ERVL-MaLR	7303.0	NM_001013767	268958.0	Mm.426026	NM_001013767	ENSMUSG00000058626	Capn11	-	calpain 11	protein-coding	2.0	1.5	0.0	1.0	1.5	0.0
Merged-chr2-77944608-2	chr2	77944108	77945108	+	999.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030560, intron 1 of 20)	RLTR28|LTR|ERVL	1748.0	NM_001290740	80744.0	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76429076-4	chr14	76428570	76429570	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207652, intron 1 of 2)	intron (NM_207652, intron 1 of 2)	13249.0	NM_207652	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	4.0	17.0	5.0	0.0	13.0	23.0
Merged-chr7-43564776-4	chr7	43564263	43565263	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001008549, exon 2 of 5)	5' UTR (NM_001008549, exon 2 of 5)	2393.0	NM_001008549	210104.0	Mm.333821	NM_001008549	ENSMUSG00000056592	Zfp658	-	zinc finger protein 658	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25940555-4	chr15	25940048	25941048	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025459)	promoter-TSS (NM_025459)	-154.0	NM_001277315	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122054658-4	chr5	122054158	122055158	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	-4807.0	NM_001312908	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80046854-4	chr18	80046365	80047365	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053117)	promoter-TSS (NM_053117)	-30.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	0.0	0.0	0.0	0.0	5.0	0.5
Merged-chr12-73794243-4	chr12	73793786	73794786	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107038.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47937078-4	chr19	47936559	47937559	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163267)	promoter-TSS (NM_001163267)	-653.0	NM_001163267	381229.0	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	15.0	53.0	50.5	33.5	46.5	47.0
Merged-chr13-37325685-4	chr13	37325170	37326170	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19675.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	6.0	6.5	0.0	0.0	6.5	2.0
Merged-chr2-180745434-4	chr2	180744956	180745956	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20117.0	NM_183161	228993.0	Mm.87189	NM_183161	ENSMUSG00000023393	Slc17a9	1700019H03Rik|BC019537|Vnut	solute carrier family 17, member 9	protein-coding	1.0	2.0	0.0	0.0	2.0	0.0
Merged-chr6-129049287-4	chr6	129048797	129049797	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_024263, intron 1 of 4)	intron (NR_024263, intron 1 of 4)	3396.0	NM_153094	232408.0	Mm.259262	NM_153094	ENSMUSG00000030154	Klrb1f	A630024B12Rik|Nkr-p1f|Nkrp1-f|Nkrp1f	killer cell lectin-like receptor subfamily B member 1F	protein-coding	0.0	0.0	1.0	1.5	0.0	0.0
Merged-chr15-25773944-4	chr15	25773449	25774449	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001353141)	promoter-TSS (NM_001353141)	-64.0	NM_001353141	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-85488912-4	chr17	85488416	85489416	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	129480.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70910427-4	chr12	70909921	70910921	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27436.0	NM_019785	56444.0	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83563991-4	chr17	83563492	83564492	+	998.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49659.0	NM_001159529	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44920920-10	chr9	44920363	44921363	+	998.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013795)	promoter-TSS (NM_013795)	-121.0	NM_013795	27425.0	Mm.14663	NM_013795	ENSMUSG00000038717	Atp5l	4933437C06Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-122901859-3	chr9	122901360	122902360	+	998.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-1386.0	NM_001353989	666257.0	Mm.390242	NM_001353989		Gm8008	EG666257|Znf660	predicted gene 8008	protein-coding	4.0	19.5	7.5	0.0	0.0	0.0
Merged-chr7-96494156-3	chr7	96493654	96494654	+	998.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 3 of 32)	intron (NM_011858, intron 3 of 32)	-152190.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141993769-3	chr4	141993248	141994248	+	998.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 2 of 31)	intron (NM_177868, intron 2 of 31)	10756.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99298147-4	chr5	99297656	99298656	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030692, exon 4 of 4)	non-coding (NR_030692, exon 4 of 4)	-45229.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	22.5	49.0	46.5	19.5	60.5	49.0
Merged-chr14-121894685-4	chr14	121894169	121895169	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 1 of 8)	intron (NM_026861, intron 1 of 8)	-15261.0	NR_130999	78312.0	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	15.5	1.5	3.0	0.5	14.0	5.5
Merged-chr5-147527977-4	chr5	147527470	147528470	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028291, intron 11 of 18)	intron (NM_028291, intron 11 of 18)	97814.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	4.0	10.0	16.5	5.5	17.0	9.0
Merged-chr12-85437271-4	chr12	85436759	85437759	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36631.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-55318885-4	chr15	55318392	55319392	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181277, intron 1 of 47)	intron (NM_181277, intron 1 of 47)	11142.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105835521-4	chr8	105835021	105836021	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024445, intron 2 of 15)	intron (NM_024445, intron 2 of 15)	7777.0	NM_024445	72236.0	Mm.386810	NM_024445	ENSMUSG00000031893	Tsnaxip1	1700016K08Rik|TXI1	translin-associated factor X (Tsnax) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32906249-4	chr19	32905740	32906740	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	148663.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	7.5	11.0	21.5	18.0	13.0	12.5
Merged-chr16-30008702-4	chr16	30008212	30009212	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033631)	promoter-TSS (NR_033631)	45.0	NR_033631	100043102.0	Mm.30797	NR_033631	ENSMUSG00000097184	4632428C04Rik	Gm4231	RIKEN cDNA 4632428C04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58616899-4	chr15	58616400	58617400	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	201432.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-36318806-4	chr3	36318292	36319292	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-96517.0	NM_198192	229214.0	Mm.330975	NM_198192	ENSMUSG00000058400	Qrfpr	AQ27|Gpr103|SP9155	pyroglutamylated RFamide peptide receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68275548-4	chr10	68275072	68276072	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	3154.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	42.0	45.5	34.0	28.0	41.5	38.5
Merged-chr7-19338231-4	chr7	19337717	19338717	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6854.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0.0	0.0	0.0	2.0	0.0	0.0
Merged-chr8-71291059-4	chr8	71290568	71291568	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001142323, exon 2 of 39)	exon (NM_001142323, exon 2 of 39)	18354.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	22.5	67.5	24.5	6.5	53.0	32.5
Merged-chr17-14826912-4	chr17	14826402	14827402	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175173, intron 24 of 24)	intron (NM_175173, intron 24 of 24)	116222.0	NM_175173	71682.0	Mm.122698	NM_175173	ENSMUSG00000046991	Wdr27	0610012K18Rik	WD repeat domain 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165318622-4	chr2	165318132	165319132	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080287, intron 1 of 20)	intron (NM_080287, intron 1 of 20)	2194.0	NM_001302752	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-70394522-4	chr16	70394033	70395033	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 2 of 15)	intron (NM_028803, intron 2 of 15)	80584.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	25.5	32.5	29.5	18.0	23.0	13.5
Merged-chr8-110902446-4	chr8	110901947	110902947	+	998.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172283)	promoter-TSS (NM_172283)	41.0	NM_172283	234730.0	Mm.102591	NM_172283	ENSMUSG00000033703	Fuk	1110046B12Rik|AI303278	fucokinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11460984-3	chr16	11460494	11461494	+	998.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	55346.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121992773-3	chr14	121992185	121993185	+	998.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 6 of 8)	intron (NM_026861, intron 6 of 8)	-27492.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	13.5	31.0	18.0	6.0	2.5	1.0
Merged-chr2-119675566-3	chr2	119675045	119676045	+	998.888916	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_030112, intron 1 of 17)	CpG	477.0	NM_030112	76246.0	Mm.33437	NM_030112	ENSMUSG00000027304	Rtf1	2900005O08Rik|6530416A09Rik|AI853581|AU043144|AW553985|Gtl7|cbp82	RTF1, Paf1/RNA polymerase II complex component	protein-coding	45.0	100.5	59.5	96.5	117.0	108.5
Merged-chr6-82913528-3	chr6	82913040	82914040	+	998.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011350, exon 14 of 14)	exon (NM_011350, exon 14 of 14)	26229.0	NM_001308374	20355.0	Mm.270543	NM_011350	ENSMUSG00000000627	Sema4f	Sema W	sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	protein-coding	0.0	12.0	2.0	2.0	7.5	17.5
Merged-chr5-63970588-7	chr5	63970114	63971114	+	998.880981	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-1717.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80468125-4	chr18	80467619	80468619	+	998.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 1 of 12)	intron (NM_026295, intron 1 of 12)	1548.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	4.0	7.5	16.0	3.5	16.5	10.0
Merged-chr13-41432501-4	chr13	41432002	41433002	+	998.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	54858.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66152433-4	chr5	66151921	66152921	+	998.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127382)	promoter-TSS (NM_001127382)	-467.0	NM_001127382	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	35.0	79.5	84.5	44.0	79.0	87.5
Merged-chr18-35707944-4	chr18	35707439	35708439	+	998.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4795.0	NM_029669	76594.0	Mm.108596	NM_029669	ENSMUSG00000024350	Dnajc18	2700075B01Rik|AU041129	DnaJ heat shock protein family (Hsp40) member C18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54781912-4	chr14	54781426	54782426	+	998.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016972)	promoter-TSS (NM_016972)	-40.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	7.0	23.0	16.0	13.0	23.0	6.5
Merged-chr10-77391284-4	chr10	77390789	77391789	+	998.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024838, intron 1 of 11)	L1MC3|LINE|L1	26984.0	NM_130895	110532.0	Mm.276815	NM_130895	ENSMUSG00000020262	Adarb1	1700057H01Rik|AW124433|AW558573|Adar2|BB220382|D10Bwg0447e|Red1	adenosine deaminase, RNA-specific, B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-46360507-4	chr2	46359994	46360994	+	998.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	663889.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106085216-8	chr11	106084713	106085713	+	998.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 1 of 15)	CpG	311.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83640795-4	chr17	83640301	83641301	+	998.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8906.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-31718308-3	chr11	31717820	31718820	+	998.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46458.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	6.5	0.5	10.0	7.5	4.0	15.5
Merged-chr19-29371059-2	chr19	29370559	29371559	+	998.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 1 of 6)	intron (NM_021893, intron 1 of 6)	3621.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3365780-2	chr12	3365280	3366280	+	998.833374	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008445, exon 1 of 8)	5' UTR (NM_008445, exon 1 of 8)	648.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39586075-2	chr1	39585575	39586575	+	998.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-8728.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43423228-4	chr7	43422729	43423729	+	998.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6872.0	NM_177693	233187.0	Mm.267027	NM_177693	ENSMUSG00000093639	Lim2	19kDa|4833403J20|MP19|To3	lens intrinsic membrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88553341-4	chr5	88552889	88553889	+	998.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1073.0	NM_023054	65961.0	Mm.490364	NM_023054	ENSMUSG00000070697	Utp3	2400011K09Rik|AW557551|C87704|Crl-1|Crl1|Crlz1|Sas10	UTP3 small subunit processome component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-17850963-6	chr14	17850408	17851408	+	998.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	MER2|DNA|TcMar-Tigger	-130736.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-21187503-3	chr2	21187008	21188008	+	998.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027728, intron 4 of 4)	intron (NM_027728, intron 4 of 4)	17857.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108327822-4	chr6	108327320	108328320	+	998.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 4 of 61)	intron (NM_010585, intron 4 of 61)	114724.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	4.5	11.0	24.5	6.5	12.5	22.0
Merged-chr15-79243372-4	chr15	79242862	79243862	+	998.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045558, intron 6 of 12)	intron (NM_001045558, intron 6 of 12)	11386.0	NM_020516	57274.0	Mm.441697	NM_020516	ENSMUSG00000032988	Slc16a8	Mct3	solute carrier family 16 (monocarboxylic acid transporters), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-28547994-4	chr2	28547516	28548516	+	998.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145836, intron 11 of 17)	intron (NM_001145836, intron 11 of 17)	14552.0	NM_001145836	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115632409-2	chr5	115631909	115632909	+	998.8333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027810)	promoter-TSS (NR_027810)	422.0	NM_198163	77407.0	Mm.27553	NM_198163	ENSMUSG00000029518	Rab35	9530019H02Rik|AU040256|H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-55197418-4	chr18	55196915	55197915	+	998.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-204824.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	6.5	27.5	11.5	19.5	63.0	20.0
Merged-chr15-62152854-4	chr15	62152362	62153362	+	998.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003368, intron 3 of 8)	intron (NR_003368, intron 3 of 8)	66589.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128334264-4	chr2	128333757	128334757	+	998.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028590, intron 1 of 2)	L1MB2|LINE|L1	95094.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	14.0	7.0	3.5	6.0	14.0	19.5
Merged-chr14-47187945-8	chr14	47187419	47188419	+	998.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008102, intron 1 of 5)	intron (NM_008102, intron 1 of 5)	1494.0	NM_008102	14528.0	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTP-CH-I|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	108.0	436.5	228.5	70.0	216.5	142.0
Merged-chr6-31117361-2	chr6	31116861	31117861	+	998.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-54268.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132477422-4	chr1	132476931	132477931	+	998.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172517)	promoter-TSS (NM_172517)	64.0	NM_172517	213464.0	Mm.132868	NM_172517	ENSMUSG00000026439	Rbbp5	4933411J24Rik|C330016J05	retinoblastoma binding protein 5, histone lysine methyltransferase complex subunit	protein-coding	21.0	14.0	8.5	10.0	14.0	18.5
Merged-chr16-4200214-4	chr16	4199725	4200725	+	998.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025432, intron 1 of 30)	RSINE1|SINE|B4	13179.0	NM_001025432	12914.0	Mm.132238	NM_001025432	ENSMUSG00000022521	Crebbp	AW558298|CBP|CBP/p300|KAT3A|p300/CBP	CREB binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105110544-7	chr5	105110077	105111077	+	998.8095089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153378)	promoter-TSS (NR_153378)	-285.0	NM_172777	236573.0	Mm.425261	NM_172777	ENSMUSG00000029298	Gbp9	-	guanylate-binding protein 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68867338-4	chr11	68866839	68867839	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14208.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96595435-4	chr3	96594934	96595934	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1202.0	NM_001024851	545554.0	Mm.267664	NM_001024851	ENSMUSG00000049097	Ankrd34a	AW060394|Ankrd34	ankyrin repeat domain 34A	protein-coding	0.0	5.0	2.5	0.0	5.0	2.5
Merged-chr16-58479177-4	chr16	58478706	58479706	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 6 of 10)	intron (NM_001357433, intron 6 of 10)	44220.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26962916-4	chr2	26962408	26963408	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207234, intron 1 of 7)	intron (NM_207234, intron 1 of 7)	1478.0	NM_207234	227656.0	Mm.291874	NM_207234	ENSMUSG00000052406	Rexo4	Gm111|Rex4|Xpmc2h	REX4, 3'-5' exonuclease	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24164322-4	chr10	24163815	24164815	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016797, intron 2 of 9)	intron (NM_016797, intron 2 of 9)	14998.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170903562-4	chr1	170903072	170904072	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR78|LTR|ERV1	9369.0	NM_001029984	435653.0	Mm.337931	NM_001029984	ENSMUSG00000070524	Fcrlb	FREB-2|FREB2|FcRL2|Fcrlm2|Fcry|mFCRL2	Fc receptor-like B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100760074-4	chr11	100759582	100760582	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081194)	promoter-TSS (NM_001081194)	-304.0	NM_001081194	380728.0	Mm.297539	NM_001081194	ENSMUSG00000035355	Kcnh4	BEC2	potassium voltage-gated channel, subfamily H (eag-related), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121995572-4	chr10	121995092	121996092	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081037, intron 1 of 21)	intron (NM_001081037, intron 1 of 21)	51723.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96890110-4	chr11	96889618	96890618	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26396.0	NM_001308183	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	14.5	34.5	21.5	10.5	61.0	32.0
Merged-chr2-127792476-4	chr2	127791987	127792987	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015476)	promoter-TSS (NR_015476)	1.0	NR_015476	67885.0	Mm.27359	NM_175125	ENSMUSG00000051319	1500011K16Rik	-	RIKEN cDNA 1500011K16 gene	ncRNA	8.0	0.0	3.5	11.0	2.5	6.5
Merged-chr14-50865147-4	chr14	50864663	50865663	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009351, intron 4 of 54)	intron (NM_009351, intron 4 of 54)	5391.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	21.5	71.5	37.5	26.5	50.5	41.5
Merged-chr6-13860076-4	chr6	13859577	13860577	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11441.0	NM_001352887	66520.0	Mm.29615	NM_183258		2610001J05Rik	C79299	RIKEN cDNA 2610001J05 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120114568-3	chr8	120114076	120115076	+	998.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172286, intron 1 of 12)	CpG	424.0	NM_001163761	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70551993-3	chr8	70551474	70552474	+	998.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	12299.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	1.0	0.5	1.0	7.0	15.5	7.0
Merged-chr8-107048459-7	chr8	107048003	107049003	+	998.775513	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_139229)	TTS (NM_139229)	111.0	NM_026513	68023.0	Mm.482335	NM_026513	ENSMUSG00000078931	Pdf	2610019N19Rik	peptide deformylase (mitochondrial)	protein-coding	17.0	44.0	16.5	11.0	32.0	11.0
Merged-chr19-12730629-4	chr19	12730130	12731130	+	998.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34840.0	NM_029550	64697.0	Mm.218561	NM_029550	ENSMUSG00000024694	Keg1	0610008P16Rik|AI316519|GS4059	kidney expressed gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-82223635-4	chr12	82223134	82224134	+	998.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 1 of 23)	intron (NM_001167983, intron 1 of 23)	53618.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120947924-2	chr11	120947424	120948424	+	998.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030696)	promoter-TSS (NM_030696)	-560.0	NM_030696	80879.0	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64281158-4	chr13	64280592	64281592	+	998.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-6104.0	NM_172587	218294.0	Mm.25335	NM_172587	ENSMUSG00000033102	Cdc14b	2810432N10Rik|A530086E13Rik|AA472821|CDC14B3|Cdc14B1	CDC14 cell division cycle 14B	protein-coding	4.5	13.5	4.5	16.5	13.5	19.5
Merged-chr4-63207023-2	chr4	63206511	63207511	+	998.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8401.0	NM_025685	373864.0	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	8.0	21.0	24.5	28.5	46.5	20.0
Merged-chr7-44869288-4	chr7	44868750	44869750	+	998.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133949, intron 1 of 11)	CpG	538.0	NM_133949	84113.0	Mm.42855	NM_133949	ENSMUSG00000038502	Ptov1	1110030G05Rik|AU041779|Gcap3	prostate tumor over expressed gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-69689182-4	chr1	69688693	69689693	+	998.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3233.0	NM_011770	22779.0	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-116442797-4	chr12	116442297	116443297	+	998.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133762, intron 23 of 28)	intron (NM_133762, intron 23 of 28)	37395.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	67.0	59.0	60.0	9.5	9.5	14.5
Merged-chr16-18249921-2	chr16	18249421	18250421	+	998.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001080999, exon 2 of 12)	exon (NM_001080999, exon 2 of 12)	1038.0	NM_001081000	15547.0	Mm.271798	NM_008307	ENSMUSG00000022721	Trmt2a	Htf9c	TRM2 tRNA methyltransferase 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164912326-4	chr2	164911819	164912819	+	998.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199027)	promoter-TSS (NM_199027)	-569.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-113514981-4	chr7	113514485	113515485	+	998.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360668, intron 1 of 12)	intron (NM_001360668, intron 1 of 12)	1151.0	NM_001360669	67420.0	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12230371-4	chr15	12229880	12230880	+	998.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356498, intron 2 of 15)	intron (NM_001356498, intron 2 of 15)	25352.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-68905862-3	chr18	68905352	68906352	+	998.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038051, intron 3 of 6)	intron (NR_038051, intron 3 of 6)	45676.0	NR_038051	78931.0	Mm.160155	NR_038051		4930546C10Rik	-	RIKEN cDNA 4930546C10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103790966-3	chr3	103790434	103791434	+	998.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301304, intron 1 of 15)	CpG	341.0	NM_001301306	15257.0	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	29.0	89.0	93.0	53.5	80.5	65.5
Merged-chr19-17339782-3	chr19	17339282	17340282	+	998.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136484)	promoter-TSS (NM_001136484)	-277.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	11.5	17.5	18.5	21.5	17.0	30.0
Merged-chr1-138963452-6	chr1	138962888	138963888	+	998.7222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166501)	promoter-TSS (NM_001166501)	-321.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59646921-4	chr15	59646423	59647423	+	998.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1731.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12141482-4	chr18	12140979	12141979	+	998.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024182, intron 6 of 12)	intron (NM_024182, intron 6 of 12)	12629.0	NM_024182	66878.0	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-58937491-4	chr6	58936983	58937983	+	998.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153574, intron 17 of 17)	RLTR40|LTR|ERVK	-30357.0	NM_021432	58243.0	Mm.389747	NM_021432	ENSMUSG00000055430	Nap1l5	1110020M21Rik	nucleosome assembly protein 1-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-85413993-4	chr9	85413464	85414464	+	998.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86814.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	4.5	6.5	3.0	0.0	3.0	4.5
Merged-chr1-33719965-4	chr1	33719466	33720466	+	998.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008999)	promoter-TSS (NM_008999)	70.0	NM_008999	19335.0	Mm.86744	NM_008999	ENSMUSG00000004768	Rab23	AW545388|opb|opb2	RAB23, member RAS oncogene family	protein-coding	0.0	3.5	4.5	1.5	4.0	2.0
Merged-chr7-128068041-4	chr7	128067532	128068532	+	998.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008401, intron 2 of 29)	intron (NM_008401, intron 2 of 29)	5392.0	NM_008401	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80155827-4	chr11	80155345	80156345	+	998.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 2 of 10)	intron (NM_172133, intron 2 of 10)	1683.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139325621-4	chr5	139325118	139326118	+	998.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172723)	promoter-TSS (NM_172723)	-154.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34958726-8	chr18	34958223	34959223	+	998.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4372.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119293949-5	chr4	119293484	119294484	+	998.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011732, intron 1 of 7)	CpG-10232	529.0	NM_011732	22608.0	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	9.5	26.0	38.0	10.0	27.0	39.5
Merged-chr9-96630866-6	chr9	96630306	96631306	+	998.694458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053268, intron 1 of 23)	CpG	697.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20532360-10	chr11	20531887	20532887	+	998.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-10866.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59615871-4	chr15	59615537	59616537	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32617.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	2.0	4.0	2.0	0.0	3.5
Merged-chr8-80916669-3	chr8	80916154	80917154	+	998.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-36135.0	NM_001301298	14388.0	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	4.5	14.5	5.0	11.0	31.5	16.5
Merged-chr1-170845899-4	chr1	170845393	170846393	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 4 of 15)	RMER4B|LTR|ERVK	21878.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51843990-4	chr13	51843486	51844486	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2689.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62541744-4	chr11	62541239	62542239	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-2478.0	NM_028448	73139.0	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45100866-4	chr2	45100372	45101372	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	9405.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-50786605-4	chr2	50786106	50787106	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-123078.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69791275-4	chr8	69790780	69791780	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133224, exon 1 of 26)	exon (NM_133224, exon 1 of 26)	117.0	NM_133224	170759.0	Mm.186066	NM_133224	ENSMUSG00000031862	Atp13a1	Atp13a|Cgi152|catp	ATPase type 13A1	protein-coding	9.5	59.0	44.0	17.5	64.0	38.0
Merged-chr4-145286934-4	chr4	145286440	145287440	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009401, intron 8 of 12)	intron (NM_009401, intron 8 of 12)	28207.0	NM_009401	21941.0	Mm.12810	NM_009401	ENSMUSG00000028602	Tnfrsf8	Cd30|D1S166E|Ki|Ki-1	tumor necrosis factor receptor superfamily, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-77251646-4	chr16	77251148	77252148	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77680.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44986611-4	chr9	44986102	44987102	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013487, exon 5 of 5)	3' UTR (NM_013487, exon 5 of 5)	4816.0	NM_013487	12500.0	Mm.4527	NM_013487	ENSMUSG00000032094	Cd3d	T3d	CD3 antigen, delta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82612198-4	chr11	82611697	82612697	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21156.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5485432-4	chr11	5484934	5485934	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35207.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	11.0	22.5	20.5	7.0	22.5	21.0
Merged-chr2-90478311-4	chr2	90477813	90478813	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	L1MB5|LINE|L1	861.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	21.0	42.5	31.0	12.5	46.5	35.5
Merged-chr10-98781145-4	chr10	98780660	98781660	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-133482.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81390017-4	chr10	81389511	81390511	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3053.0	NM_001099917	72273.0	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47790821-6	chr6	47790226	47791226	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12926.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53088904-2	chr18	53088404	53089404	+	998.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87388.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5847167-2	chr17	5846667	5847667	+	998.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_025664, intron 1 of 17)	B1_Mur4|SINE|Alu	5787.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4191083-2	chr19	4190583	4191583	+	998.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178650)	promoter-TSS (NM_178650)	-36.0	NM_178650	108995.0	Mm.288312	NM_178650	ENSMUSG00000040247	Tbc1d10c	1810062O14Rik|AI428527	TBC1 domain family, member 10c	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-133424247-2	chr1	133423747	133424747	+	998.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011439)	promoter-TSS (NM_011439)	-35.0	NM_011439	20668.0	Mm.8575	NM_011439	ENSMUSG00000070643	Sox13	AA407916|AW259412|AW540933|Sox-13	SRY (sex determining region Y)-box 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70848425-4	chr17	70847967	70848967	+	998.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164074, intron 1 of 2)	intron (NM_001164074, intron 1 of 2)	1323.0	NM_001164076	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17675522-4	chr6	17674971	17675971	+	998.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18523.0	NM_001289626	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.0	0.5	0.0	0.5	0.0	1.5
Merged-chr2-93941877-4	chr2	93941387	93942387	+	998.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15213.0	NM_001145034	620695.0	Mm.482106	NM_001145034	ENSMUSG00000087006	Gm13889	Ag2	predicted gene 13889	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84370561-4	chr2	84370072	84371072	+	998.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018782, intron 6 of 15)	intron (NM_018782, intron 6 of 15)	54694.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	2.0	8.5	0.0	1.5	7.5	5.0
Merged-chr5-115187996-4	chr5	115187512	115188512	+	998.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310712, intron 1 of 5)	intron (NM_001310712, intron 1 of 5)	-1891.0	NM_001310715	29867.0	Mm.38551	NM_013879	ENSMUSG00000029544	Cabp1	caldendrin	calcium binding protein 1	protein-coding	3.5	3.5	5.0	5.0	8.0	7.0
Merged-chr19-60946806-4	chr19	60946304	60947304	+	998.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	57055.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	217.5	282.0	263.5	96.5	196.0	188.5
Merged-chr10-80180165-4	chr10	80179614	80180614	+	998.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007909, intron 1 of 3)	intron (NM_007909, intron 1 of 3)	632.0	NM_007909	13637.0	Mm.1478	NM_007909	ENSMUSG00000003070	Efna2	CEK7L|Elf1|Epl6|Eplg6|Lerk6	ephrin A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98820793-4	chr12	98820309	98821309	+	998.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081191, intron 28 of 43)	intron (NM_001081191, intron 28 of 43)	49787.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30393068-4	chr2	30392571	30393571	+	998.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020329, intron 1 of 7)	intron (NM_020329, intron 1 of 7)	817.0	NM_001290508	57170.0	Mm.285167	NM_020329	ENSMUSG00000026856	Dolpp1	0610011H20Rik|AB030189|LSFR2	dolichyl pyrophosphate phosphatase 1	protein-coding	1.5	5.0	4.0	4.0	12.5	4.0
Merged-chr10-81173284-4	chr10	81172779	81173779	+	998.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3352.0	NM_007907	13629.0	Mm.2903	NM_007907	ENSMUSG00000034994	Eef2	Ef-2	eukaryotic translation elongation factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97632151-4	chr11	97631656	97632656	+	998.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2440.0	NM_175332	103551.0	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	2.5	13.0	8.5	3.0	27.5	9.0
Merged-chr7-110006591-4	chr7	110006047	110007047	+	998.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037959)	promoter-TSS (NR_037959)	99.0	NR_037959	69781.0	Mm.440728	NR_037959	ENSMUSG00000101585	1600010M07Rik	-	RIKEN cDNA 1600010M07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-11196416-3	chr12	11195900	11196900	+	998.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131084, exon 3 of 5)	non-coding (NR_131084, exon 3 of 5)	8102.0	NR_131084	77442.0	Mm.159922	NR_131083	ENSMUSG00000112041	9530020I12Rik	-	RIKEN cDNA 9530020I12 gene	ncRNA	0.0	0.0	5.0	0.0	4.5	3.0
Merged-chr1-172313206-5	chr1	172312768	172313768	+	998.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080419, intron 1 of 6)	intron (NM_080419, intron 1 of 6)	901.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	70.5	209.5	146.5	122.0	352.0	250.0
Merged-chr14-54653702-4	chr14	54653189	54654189	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085472)	promoter-TSS (NM_001085472)	-4.0	NM_019567	56215.0	Mm.297078	NM_019567	ENSMUSG00000022185	Acin1	2610036I19Rik|2610510L13Rik|Acinus|Acn|C79325|acinusL|acinusS|mKIAA0670	apoptotic chromatin condensation inducer 1	protein-coding	7.5	19.5	7.5	14.5	18.5	16.0
Merged-chr19-11813340-4	chr19	11812854	11813854	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	6049.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	0.0	19.5	2.5	9.5	36.0	11.5
Merged-chr1-88094587-4	chr1	88093996	88094996	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201642)	promoter-TSS (NM_201642)	-505.0	NM_201642	394432.0	Mm.300095	NM_201642	ENSMUSG00000090124	Ugt1a7c	A10'|A13|Ugt1a10	UDP glucuronosyltransferase 1 family, polypeptide A7C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47359793-4	chr14	47359277	47360277	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-14083.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	74.0	190.5	115.0	19.0	90.0	94.0
Merged-chr2-45239034-4	chr2	45238512	45239512	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121570.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36359295-4	chr18	36358776	36359776	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081365, intron 1 of 2)	intron (NM_001081365, intron 1 of 2)	10652.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54404338-4	chr12	54403848	54404848	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-13030.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64488176-4	chr5	64487679	64488679	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11171.0	NR_045413	77382.0	Mm.366742	NR_045411	ENSMUSG00000105352	C030018K13Rik	-	RIKEN cDNA C030018K13 gene	ncRNA	1.5	9.0	10.0	3.0	2.0	12.5
Merged-chr11-73324200-4	chr11	73323722	73324722	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023113, intron 1 of 5)	intron (NM_023113, intron 1 of 5)	415.0	NM_023113	11484.0	Mm.293574	NM_023113	ENSMUSG00000020774	Aspa	Acy-2|Acy2|nur7	aspartoacylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50482498-4	chr16	50482000	50483000	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16C|LTR|ERVL	-43745.0	NR_040380	619312.0	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32509467-4	chr2	32508975	32509975	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25884.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31232993-4	chr3	31232477	31233477	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172861, intron 4 of 7)	intron (NM_172861, intron 4 of 7)	77342.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123662241-4	chr5	123661742	123662742	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359224, intron 1 of 18)	intron (NM_001359224, intron 1 of 18)	22119.0	NM_019765	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	20.5	54.5	58.5	21.5	45.0	38.0
Merged-chr3-90111852-4	chr3	90111354	90112354	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029937, intron 2 of 39)	intron (NM_029937, intron 2 of 39)	7722.0	NM_029937	77595.0	Mm.159949	NM_029937	ENSMUSG00000027939	Nup210l	4930548O11Rik|R26-EGFP|Tg(Gt(ROSA)26Sor-EGFP)130910Eps	nucleoporin 210-like	protein-coding	2.5	9.5	6.5	0.5	14.0	0.5
Merged-chr5-76705627-4	chr5	76705123	76706123	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	113909.0	NM_199032	381644.0	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90108499-4	chr9	90107993	90108993	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039147, intron 2 of 12)	PB1|SINE|Alu	6327.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-30977341-4	chr3	30976850	30977850	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7935.0	NM_001165956	241915.0	Mm.233173	NM_153421	ENSMUSG00000037652	Phc3	E030046K01Rik|Edr3|Hph3	polyhomeotic 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-20936028-4	chr5	20935524	20936524	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080977, intron 1 of 7)	intron (NM_001080977, intron 1 of 7)	-14965.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146818952-4	chr5	146818466	146819466	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-13924.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	43.5	74.0	62.5	28.5	39.5	43.5
Merged-chr15-93387654-4	chr15	93387148	93388148	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347097, exon 7 of 8)	exon (NM_001347097, exon 7 of 8)	10686.0	NM_001347097	67197.0	Mm.293181	NM_026025	ENSMUSG00000022635	Zcrb1	2700088M22Rik|Madp-1	zinc finger CCHC-type and RNA binding motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172348256-4	chr1	172347706	172348706	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	6996.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	54.0	84.0	67.5	66.0	80.0	66.0
Merged-chr15-6340545-4	chr15	6340021	6341021	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	40732.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21316981-4	chr9	21316478	21317478	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-3741.0	NM_001359227	68682.0	Mm.148425	NM_152808	ENSMUSG00000057193	Slc44a2	1110028E10Rik|CTL2	solute carrier family 44, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155558234-4	chr1	155557724	155558724	+	998.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028250, exon 1 of 8)	5' UTR (NM_028250, exon 1 of 8)	104.0	NM_028250	72482.0	Mm.288249	NM_026683	ENSMUSG00000033701	Acbd6	0610010G04Rik|2610100E10Rik	acyl-Coenzyme A binding domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67442523-4	chr7	67442028	67443028	+	998.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-69670.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	25.5	37.5	22.5	9.5	27.5	23.0
Merged-chr15-81857882-3	chr15	81857378	81858378	+	998.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020507, intron 1 of 1)	CpG	448.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	2.0	17.0	15.5	11.5	22.0	13.5
Merged-chr13-99331694-3	chr13	99331176	99332176	+	998.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026873, intron 6 of 9)	intron (NM_026873, intron 6 of 9)	13002.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	10.0	14.5	15.0	9.0	1.5	2.5
Merged-chr1-138962600-7	chr1	138962110	138963110	+	998.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1099.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134405989-9	chr1	134405600	134406600	+	998.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355133, intron 1 of 8)	CpG	319.0	NR_149307	72017.0	Mm.280230	NM_028057	ENSMUSG00000026456	Cyb5r1	1500005G05Rik|B5R.1|C80155|Nqo3a2	cytochrome b5 reductase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26504538-7	chr17	26504012	26505012	+	998.5476070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3960.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	9.0	38.0	33.5	19.0	31.5	27.0
Merged-chr17-32536513-4	chr17	32536004	32537004	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024442)	promoter-TSS (NM_024442)	-53.0	NM_001356302	70101.0	Mm.30504	NM_024442	ENSMUSG00000048440	Cyp4f16	2310021J05Rik|AI746515	cytochrome P450, family 4, subfamily f, polypeptide 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-28967892-4	chr4	28967394	28968394	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001290434)	TTS (NM_001290434)	-100185.0	NR_151693	102634169.0		NR_151693		Gm11917	-	predicted gene 11917	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108256171-4	chr3	108255672	108256672	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011967)	promoter-TSS (NM_011967)	-754.0	NM_011967	26442.0	Mm.208883	NM_011967	ENSMUSG00000068749	Psma5	ZETA	proteasome (prosome, macropain) subunit, alpha type 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-19998189-4	chr11	19997680	19998680	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_033523, exon 2 of 6)	exon (NM_033523, exon 2 of 6)	73738.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	9.5	2.0	0.5	0.0	2.0	0.0
Merged-chr2-3512181-4	chr2	3511680	3512680	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177647)	promoter-TSS (NM_177647)	634.0	NR_103465	50497.0	Mm.89341	NM_015765	ENSMUSG00000051396	Hspa14	70kDa|HSP70L1|Hsp70-4|NST-1|hsr.1	heat shock protein 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99204721-4	chr10	99204195	99205195	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58536.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142460743-4	chr7	142460348	142461348	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271509)	promoter-TSS (NM_001271509)	36.0	NM_001136071	16985.0	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	8.5	21.0	14.5	8.5	9.0	9.0
Merged-chr16-17554167-4	chr16	17553685	17554685	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145435, intron 4 of 7)	intron (NM_001145435, intron 4 of 7)	7062.0	NM_029053	74685.0	Mm.38634	NM_029053	ENSMUSG00000022759	Lrrc74b	4930451C15Rik|mCG12354|mCP17390	leucine rich repeat containing 74B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17721172-4	chr10	17720722	17721722	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2006.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123190950-4	chr8	123190466	123191466	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007876, intron 1 of 10)	intron (NM_007876, intron 1 of 10)	4731.0	NM_007876	13479.0	Mm.20388	NM_007876	ENSMUSG00000019278	Dpep1	AI327012|MBD	dipeptidase 1 (renal)	protein-coding	10.5	6.0	12.5	7.0	0.5	10.0
Merged-chr2-3327543-4	chr2	3327045	3328045	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001290370, exon 12 of 12)	3' UTR (NM_001290370, exon 12 of 12)	5083.0	NM_001013376	227522.0	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117843820-4	chr10	117843333	117844333	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	2141.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8968816-4	chr3	8968312	8969312	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-4666.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	1.0	2.0	2.5	0.0	2.5	3.5
Merged-chr1-152594880-4	chr1	152594374	152595374	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	30343.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107280402-3	chr9	107279868	107280868	+	998.5238039999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316691, intron 1 of 7)	intron (NM_001316691, intron 1 of 7)	9028.0	NM_001316691	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	45.5	87.5	68.5	1.0	14.0	3.0
Merged-chr15-31531806-2	chr15	31531306	31532306	+	998.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172606)	promoter-TSS (NM_172606)	-769.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120580520-2	chr2	120580020	120581020	+	998.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009222, intron 1 of 7)	intron (NM_009222, intron 1 of 7)	12849.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	2.0	4.0	0.5	1.0	9.0	2.0
Merged-chr4-130916860-4	chr4	130916377	130917377	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	3543.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110557191-4	chr7	110556697	110557697	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 2 of 40)	intron (NM_177324, intron 2 of 40)	57723.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165679220-2	chr1	165678720	165679720	+	998.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	MIRc|SINE|MIR	28874.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32404970-2	chr17	32404470	32405470	+	998.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029458)	TTS (NR_029458)	-1388.0	NR_153797	320484.0	Mm.122284	NM_178785	ENSMUSG00000052142	Rasal3	A430107D22Rik	RAS protein activator like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79683515-2	chr10	79683015	79684015	+	998.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359818, intron 1 of 4)	intron (NM_001359818, intron 1 of 4)	1320.0	NM_001359817	216150.0	Mm.21981	NM_177613	ENSMUSG00000020307	Cdc34	AI327276|E2-CDC34|UBE2R1	cell division cycle 34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135012934-4	chr5	135012456	135013456	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001190437)	TTS (NM_001190437)	201.0	NR_026688	69812.0	Mm.18422	NR_026688	ENSMUSG00000085042	Abhd11os	2010001M06Rik|AI462243|Wbscr26|Wnscr26	abhydrolase domain containing 11, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-23385228-2	chr1	23384728	23385728	+	998.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-2053.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120535184-4	chr8	120534698	120535698	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145897)	promoter-TSS (NM_001145897)	-659.0	NM_001145897	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134430681-2	chr6	134430181	134431181	+	998.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355686, intron 4 of 5)	intron (NM_001355686, intron 4 of 5)	16253.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0.5	9.5	10.0	4.5	0.0	1.5
Merged-chr6-140627358-2	chr6	140626858	140627858	+	998.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001309436, intron 1 of 8)	RSINE1|SINE|B4	473.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69627977-2	chr11	69627477	69628477	+	998.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-4994.0	NM_011814	23879.0	Mm.41930	NM_011814	ENSMUSG00000018765	Fxr2	Fxr2h	fragile X mental retardation, autosomal homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-12272999-2	chr12	12272499	12273499	+	998.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	10860.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-102665365-4	chr13	102664862	102665862	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-28185.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111488845-4	chr13	111488295	111489295	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028487, intron 1 of 12)	CpG	1332.0	NM_028487	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	1.5	10.5	10.5	1.0	12.0	3.0
Merged-chr3-27234683-4	chr3	27234185	27235185	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 3 of 4)	intron (NM_178772, intron 3 of 4)	51681.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-118095681-4	chr5	118095217	118096217	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172721, exon 6 of 11)	exon (NM_172721, exon 6 of 11)	59741.0	NM_172721	231672.0	Mm.221769	NM_172721	ENSMUSG00000032867	Fbxw8	4930438M06Rik|FBW6|FBW8|FBXO29|Fbx29	F-box and WD-40 domain protein 8	protein-coding	0.0	0.5	1.0	2.0	10.5	8.5
Merged-chr5-139717733-2	chr5	139717189	139718189	+	998.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_174850, intron 4 of 16)	intron (NM_174850, intron 4 of 16)	18644.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	0.0	0.0	1.0	7.0	0.0	1.0
Merged-chr16-10452711-4	chr16	10452206	10453206	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5344.0	NM_001013778	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-127441329-4	chr8	127440844	127441844	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033620, intron 20 of 24)	intron (NM_033620, intron 20 of 24)	141692.0	NM_001013580	93742.0	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	65.0	170.0	112.0	11.0	20.5	5.5
Merged-chr4-117886947-4	chr4	117886450	117887450	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033617, intron 1 of 7)	CpG	379.0	NM_033617	114143.0	Mm.207052	NM_033617	ENSMUSG00000033379	Atp6v0b	2310024H13Rik|Atp6f|VMA16	ATPase, H+ transporting, lysosomal V0 subunit B	protein-coding	50.5	126.0	119.0	50.0	113.5	115.0
Merged-chr8-111746228-2	chr8	111745728	111746728	+	998.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2379.0	NM_009954	12927.0	Mm.3758	NM_009954	ENSMUSG00000031955	Bcar1	AI385681|Cas|Crkas	breast cancer anti-estrogen resistance 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19751192-2	chr7	19750692	19751692	+	998.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1619.0	NM_001159724	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5429267-2	chr19	5428767	5429767	+	998.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4123.0	NM_001256515	107242.0	Mm.329658	NM_134149	ENSMUSG00000047423	AI837181	Bles03|N28173	expressed sequence AI837181	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5502566-4	chr11	5502070	5503070	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-18071.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	9.5	16.5	12.0	14.5	21.0	24.0
Merged-chr15-8382466-4	chr15	8381992	8382992	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201232, intron 1 of 45)	intron (NM_201232, intron 1 of 45)	61971.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-51170573-2	chr6	51170073	51171073	+	998.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99337.0	NR_029719	387166.0		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80202733-2	chr7	80202233	80203233	+	998.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	4292.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-112138775-4	chr10	112138268	112139268	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR46A2|LTR|ERVK	-24853.0	NM_001310675	353025.0	Mm.194428	NM_178278	ENSMUSG00000035694	Caps2	D630005B03Rik	calcyphosphine 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154913047-2	chr4	154912547	154913547	+	998.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14004.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91713998-2	chr6	91713498	91714498	+	998.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	29931.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	25.5	65.5	41.5	25.0	58.0	44.0
Merged-chr17-36252602-4	chr17	36252048	36253048	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5298.0	NM_026308	67676.0	Mm.27131	NM_026308	ENSMUSG00000024446	Rpp21	0610037N01Rik	ribonuclease P 21 subunit	protein-coding	7.0	9.0	9.0	1.5	27.0	3.0
Merged-chr16-31938596-4	chr16	31938065	31939065	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172822, intron 1 of 2)	MT2B|LTR|ERVL	4714.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98856261-2	chr13	98855761	98856761	+	998.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 15 of 23)	Lx8|LINE|L1	34781.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-79479716-2	chr14	79479216	79480216	+	998.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018765, intron 2 of 9)	B1_Mm|SINE|Alu	-1478.0	NM_007920	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79168539-3	chr12	79168056	79169056	+	998.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016800, intron 1 of 5)	intron (NM_016800, intron 1 of 5)	3902.0	NM_016800	53612.0	Mm.265929	NM_016800	ENSMUSG00000021124	Vti1b	AU015348|GES30|MVti1b|SNARE|Vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding	18.5	22.5	10.5	113.0	225.5	183.5
Merged-chr4-118152557-2	chr4	118152066	118153066	+	998.5	f0_balb.idr|f0_c57.idr	intron (NM_001161823, intron 12 of 21)	intron (NM_001161823, intron 12 of 21)	-17620.0	NM_001161774	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45107242-4	chr14	45106742	45107742	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112183.0	NM_172597	70561.0	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29448560-4	chr19	29448063	29449063	+	998.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 4 of 5)	RLTR14-int|LTR|ERV1	37644.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-8917289-4	chr5	8916790	8917790	+	998.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008830, intron 9 of 27)	intron (NM_008830, intron 9 of 27)	23569.0	NM_008830	18670.0	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-115209575-4	chr13	115209066	115210066	+	998.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107602.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116627500-4	chr4	116627005	116628005	+	998.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284229)	promoter-TSS (NM_001284229)	-8.0	NM_001284229	50927.0	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-96222113-4	chr5	96221525	96222525	+	998.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039084, intron 2 of 6)	MLT1H|LTR|ERVL-MaLR	11910.0	NM_053158	94061.0	Mm.295499	NM_053158	ENSMUSG00000029486	Mrpl1	2410002L03Rik|5830418D04Rik|AI462572|L1mt	mitochondrial ribosomal protein L1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122418522-4	chr2	122418023	122419023	+	998.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22297.0	NM_172980	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	12.5	19.5	11.5	18.5	49.5	55.5
Merged-chr5-16541954-4	chr5	16541440	16542440	+	998.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11555.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-60627780-4	chr3	60627274	60628274	+	998.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001253710, exon 8 of 8)	3' UTR (NM_001253710, exon 8 of 8)	126595.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	11.5	30.5	14.5	11.5	30.5	14.5
Merged-chr10-19933818-4	chr10	19933249	19934249	+	998.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008580)	promoter-TSS (NM_008580)	-777.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	10.0	5.5	22.5	13.5	5.5	22.5
Merged-chr18-32359308-7	chr18	32358791	32359791	+	998.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045403, exon 3 of 3)	non-coding (NR_045403, exon 3 of 3)	-17926.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-19344731-4	chr2	19344153	19345153	+	998.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_126563, exon 1 of 4)	non-coding (NR_126563, exon 1 of 4)	336.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100740447-4	chr12	100739950	100740950	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15330.0	NM_153587	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-56946822-4	chr4	56946317	56947317	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175518, intron 1 of 17)	CpG	612.0	NM_175518	242474.0	Mm.296632	NM_175518	ENSMUSG00000055296	Tmem245	A630051L19Rik|AI957324|D730040F13Rik	transmembrane protein 245	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66087207-4	chr5	66086710	66087710	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	10969.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	9.0	24.0	20.5	11.0	34.0	21.0
Merged-chr11-103027847-4	chr11	103027325	103028325	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008707)	promoter-TSS (NM_008707)	-718.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-55957377-4	chr7	55956894	55957894	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023647, intron 1 of 6)	intron (NM_023647, intron 1 of 6)	5099.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	71.5	126.0	80.0	69.5	153.0	56.0
Merged-chr6-125192153-4	chr6	125191662	125192662	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025595)	promoter-TSS (NM_025595)	-38.0	NM_025595	66493.0	Mm.138749	NM_025595	ENSMUSG00000030335	Mrpl51	2610511M02Rik|CDA09|HSPC241|Mrp64	mitochondrial ribosomal protein L51	protein-coding	79.5	147.5	135.0	86.5	154.5	135.0
Merged-chr13-98874399-4	chr13	98873897	98874897	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 6 of 23)	intron (NM_178716, intron 6 of 23)	16645.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-106910337-4	chr4	106909828	106910828	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1142.0	NM_198438	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	1.0	2.0	2.0	1.0	0.5	2.0
Merged-chr7-126704755-4	chr7	126704258	126705258	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009898)	promoter-TSS (NM_009898)	58.0	NM_009898	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87639972-4	chr1	87639471	87640471	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	19659.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137724962-4	chr4	137724455	137725455	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081155, intron 19 of 24)	intron (NM_001081155, intron 19 of 24)	494.0	NR_138592	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	24.0	31.0	95.0	42.5	91.0	120.0
Merged-chr6-98092373-4	chr6	98091868	98092868	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	100585.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-53818309-4	chr1	53817879	53818879	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 28 of 28)	(GA)n|Simple_repeat|Simple_repeat	-31045.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-145750533-4	chr3	145750030	145751030	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-8162.0	NM_026993	69219.0	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97927993-4	chr15	97927502	97928502	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19706.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51518627-4	chr3	51518116	51519116	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_080793, exon 8 of 8)	3' UTR (NM_080793, exon 8 of 8)	34650.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79711162-5	chr11	79710737	79711737	+	998.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029579)	promoter-TSS (NR_029579)	-732.0	NR_029579	387188.0		NR_029579	ENSMUSG00000065395	Mir193a	Mir193|Mirn193|mir-193a|mmu-mir-193|mmu-mir-193a	microRNA 193a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-64594083-3	chr18	64593564	64594564	+	998.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001488, intron 2 of 27)	MTEa|LTR|ERVL-MaLR	66936.0	NM_001001488	54670.0	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115327678-4	chr5	115327126	115328126	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036616, intron 1 of 4)	CpG	449.0	NR_036616	108014.0	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25360711-4	chr10	25360166	25361166	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 1 of 16)	intron (NM_001358754, intron 1 of 16)	868.0	NM_001358751	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97782019-4	chr7	97781504	97782504	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-6537.0	NM_001357365	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28584079-4	chr7	28583582	28584582	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027470, intron 1 of 9)	L2b|LINE|L2	14102.0	NM_027470	70584.0	Mm.21876	NM_027470	ENSMUSG00000030602	Pak4	5730488L07Rik|AW555722|mKIAA1142	p21 (RAC1) activated kinase 4	protein-coding	1.0	9.5	0.5	1.5	2.0	0.0
Merged-chr13-43122807-4	chr13	43122305	43123305	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005748)	promoter-TSS (NM_001005748)	-34.0	NM_001005748	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4213316-4	chr16	4212759	4213759	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001025432, exon 1 of 31)	5' UTR (NM_001025432, exon 1 of 31)	145.0	NM_001025432	12914.0	Mm.132238	NM_001025432	ENSMUSG00000022521	Crebbp	AW558298|CBP|CBP/p300|KAT3A|p300/CBP	CREB binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118866051-4	chr10	118865538	118866538	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014390, intron 2 of 2)	intron (NM_001014390, intron 2 of 2)	2865.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	52.5	87.0	50.5	22.0	126.0	50.0
Merged-chr16-55526675-4	chr16	55526170	55527170	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31939.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-144001531-4	chr1	144000983	144001983	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009061, exon 5 of 5)	3' UTR (NM_009061, exon 5 of 5)	2666.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121429399-4	chr10	121428894	121429894	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	46856.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0.5	3.5	2.0	11.0	5.5	4.5
Merged-chr8-94373285-4	chr8	94372790	94373790	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR33|LTR|ERVK	-13139.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	2.0	9.0	5.5	0.0	4.5	3.0
Merged-chr6-112752157-4	chr6	112751649	112752649	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080448, intron 12 of 21)	intron (NM_080448, intron 12 of 21)	-55479.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-57745561-4	chr14	57745073	57746073	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015771, intron 1 of 7)	CpG	550.0	NM_015771	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61400020-11	chr18	61399556	61400556	+	998.3485109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133249, intron 1 of 11)	CpG	375.0	NM_133249	170826.0	Mm.415302	NM_133249	ENSMUSG00000033871	Ppargc1b	4631412G21Rik|Perc	peroxisome proliferative activated receptor, gamma, coactivator 1 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44456859-2	chr10	44456359	44457359	+	998.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_007548, exon 2 of 7)	exon (NM_007548, exon 2 of 7)	1889.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57917853-2	chr9	57917353	57918353	+	998.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027086, intron 3 of 10)	intron (NM_027086, intron 3 of 10)	6867.0	NM_001122873	69459.0	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-153962228-2	chr3	153961728	153962728	+	998.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11208.0	NM_001081263	242259.0	Mm.239962	NM_001081263	ENSMUSG00000028360	Slc44a5	AA117069|Gm422	solute carrier family 44, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61348208-2	chr9	61347708	61348708	+	998.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24158.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3767905-6	chr19	3767524	3768524	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001167886, exon 2 of 11)	5' UTR (NM_001167886, exon 2 of 11)	603.0	NM_001167885	225888.0	Mm.278578	NM_144871	ENSMUSG00000045098	Kmt5b	AA117471|C630029K18Rik|Suv4-20h1|Suv420h1	lysine methyltransferase 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128856431-4	chr6	128855938	128856938	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254946, intron 2 of 2)	RMER17C-int|LTR|ERVK	-30123.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	11.0	17.5	4.0	3.5	6.0	6.5
Merged-chr10-59865241-4	chr10	59864770	59865770	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14321.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34771256-3	chr2	34770815	34771815	+	998.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022310)	promoter-TSS (NM_022310)	-775.0	NM_001163434	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184616127-4	chr1	184615631	184616631	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58440.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107118339-4	chr13	107117848	107118848	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95778.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172515573-4	chr1	172515086	172516086	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5544.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	49.0	116.0	79.0	30.0	68.0	42.5
Merged-chr10-127620357-6	chr10	127619896	127620896	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 1 of 88)	intron (NM_008512, intron 1 of 88)	752.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	38.0	93.0	54.5	17.5	54.5	27.0
Merged-chr5-105356583-4	chr5	105356081	105357081	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10105.0	NR_132129	634650.0	Mm.458435	NM_001039647	ENSMUSG00000092021	Gbp11	EG634650|Gm7141	guanylate binding protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43879579-4	chr5	43879046	43880046	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	RSINE1|SINE|B4	10737.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	20.0	64.5	45.0	29.0	58.0	31.5
Merged-chr18-64957673-4	chr18	64957132	64958132	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	-65895.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	92.5	150.5	134.5	9.5	49.5	40.0
Merged-chr17-64579991-4	chr17	64579511	64580511	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21638.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88718050-4	chr3	88717530	88718530	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028056, intron 3 of 5)	intron (NR_028056, intron 3 of 5)	1176.0	NR_028056	19769.0	Mm.4009	NM_009069	ENSMUSG00000028057	Rit1	RIBB|ROC1|Rit	Ras-like without CAAX 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73881670-4	chr12	73881170	73882170	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19654.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130783120-4	chr4	130782612	130783612	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9425.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31564054-4	chr15	31563594	31564594	+	998.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4739.0	NM_181588	69574.0	Mm.28108	NM_181588	ENSMUSG00000022235	Cmbl	2310016A09Rik	carboxymethylenebutenolidase-like (Pseudomonas)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25875535-4	chr17	25875056	25876056	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026686)	promoter-TSS (NM_026686)	56.0	NM_026686	68347.0	Mm.35098	NM_026686	ENSMUSG00000025731	Mettl26	0610011F06Rik	methyltransferase like 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112251633-4	chr13	112251113	112252113	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36838.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0.0	2.5	0.0	1.0	0.5	2.0
Merged-chr11-3863944-4	chr11	3863433	3864433	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152818)	promoter-TSS (NM_152818)	-30.0	NM_152818	74309.0	Mm.61022	NM_152818	ENSMUSG00000020435	Osbp2	1700095P05Rik|C630001G20Rik|Gm244|ORP-4|OSBPL1	oxysterol binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-131245224-4	chr6	131244724	131245724	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001170851, exon 2 of 9)	exon (NM_001170851, exon 2 of 9)	2138.0	NM_001170851	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	32.0	111.5	78.0	32.0	134.0	78.0
Merged-chr6-87500437-4	chr6	87499937	87500937	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	-4110.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	69.5	148.5	132.0	79.0	183.0	109.5
Merged-chr13-20494235-4	chr13	20493741	20494741	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198093, intron 1 of 6)	intron (NM_198093, intron 1 of 6)	21251.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.0	2.5	4.5	0.0	0.5	3.5
Merged-chr18-53250872-4	chr18	53250375	53251375	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	5213.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-101958862-4	chr12	101958370	101959370	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167914)	promoter-TSS (NM_001167914)	-627.0	NM_001167914	110616.0	Mm.271914	NM_029705	ENSMUSG00000021189	Atxn3	2210008M02Rik|AI463012|AI647473|ATX3|MJD1|Mjd|Sca3|ataxin-3	ataxin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90077612-4	chr3	90077105	90078105	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022314, intron 2 of 8)	intron (NM_022314, intron 2 of 8)	-1916.0	NM_001253738	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	1.0	9.0	16.5	2.5	9.0	10.5
Merged-chr1-37308816-4	chr1	37308303	37309303	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	8965.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-76378900-4	chr18	76378387	76379387	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116442.0	NM_001311070	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	0.0	4.0	0.5	0.0	0.0	1.0
Merged-chr4-87944577-4	chr4	87944063	87945063	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027326, intron 2 of 10)	L1ME3A|LINE|L1	88844.0	NM_027326	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27922383-4	chr15	27921870	27922870	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	103478.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128724362-4	chr4	128723879	128724879	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 9 of 14)	intron (NM_018774, intron 9 of 14)	-3192.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	7.0	10.0	23.0	5.5	15.5	5.5
Merged-chr18-39517359-4	chr18	39516847	39517847	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30102.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-33898540-4	chr1	33898039	33899039	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 1 of 6)	intron (NM_177235, intron 1 of 6)	9082.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16895230-4	chr7	16894741	16895741	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010320, exon 4 of 4)	exon (NM_010320, exon 4 of 4)	3455.0	NM_010320	14709.0	Mm.103770	NM_010320	ENSMUSG00000063594	Gng8	G(y)8	guanine nucleotide binding protein (G protein), gamma 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-37849008-4	chr18	37848491	37849491	+	998.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007858, intron 26 of 26)	intron (NM_007858, intron 26 of 26)	5669.0	NR_105945	102465592.0		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131052784-7	chr1	131052297	131053297	+	998.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008551)	TTS (NM_008551)	32952.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	43.0	90.0	47.0	29.5	81.0	49.0
Merged-chr10-30797095-3	chr10	30796615	30797615	+	998.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 1 of 14)	MTB_Mm|LTR|ERVL-MaLR	6211.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5390389-3	chr6	5389895	5390895	+	998.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355662)	promoter-TSS (NM_001355662)	-15.0	NM_001355662	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	0.0	7.5	5.0	0.0	0.0	3.5
Merged-chr1-177257542-6	chr1	177257145	177258145	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-8878.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97420259-4	chr6	97419750	97420750	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 4 of 23)	intron (NM_145148, intron 4 of 23)	39036.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92021163-4	chr16	92020676	92021676	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-37146.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11234439-4	chr19	11233950	11234950	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045317, intron 1 of 2)	intron (NR_045317, intron 1 of 2)	31701.0	NM_007641	12482.0	Mm.4046	NM_007641	ENSMUSG00000024673	Ms4a1	AA960661|Cd20|Ly-44|Ms4a2	membrane-spanning 4-domains, subfamily A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-80879472-2	chr8	80878960	80879960	+	998.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_021356, intron 1 of 9)	CpG	1019.0	NM_021356	14388.0	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	22.0	32.5	39.5	33.0	91.0	33.5
Merged-chr8-82863873-4	chr8	82863363	82864363	+	998.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177378, exon 1 of 7)	5' UTR (NM_177378, exon 1 of 7)	507.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	15.5	65.5	25.5	14.0	19.0	35.5
Merged-chr4-139209048-4	chr4	139208553	139209553	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	14942.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	177.5	260.5	253.5	86.5	198.5	211.0
Merged-chr4-155894426-4	chr4	155893928	155894928	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207223, intron 1 of 24)	intron (NM_207223, intron 1 of 24)	2553.0	NM_207223	140500.0	Mm.219591	NM_207223	ENSMUSG00000029033	Acap3	Centb5|Kiaa1716-hp|mKIAA1716	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	protein-coding	4.0	0.0	4.5	11.5	35.5	37.5
Merged-chr19-60467367-4	chr19	60466883	60467883	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_201615, exon 1 of 1)	exon (NM_201615, exon 1 of 1)	921.0	NM_201615	226278.0	Mm.377241	NM_201615	ENSMUSG00000045052	Prlhr	Gm339|Gpr10|Gr3|Prrpr	prolactin releasing hormone receptor	protein-coding	2.5	0.0	1.5	3.5	0.0	0.0
Merged-chr15-94566065-4	chr15	94565560	94566560	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029926, intron 10 of 11)	ORR1D2|LTR|ERVL-MaLR	22400.0	NM_029926	266632.0	Mm.422858	NM_029926	ENSMUSG00000059883	Irak4	8430405M07Rik|9330209D03Rik|IRAK-4|NY-REN-64	interleukin-1 receptor-associated kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8803267-4	chr4	8802768	8803768	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 3 of 36)	intron (NM_001355382, intron 3 of 36)	51944.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	7.0	37.0	14.5	11.0	21.0	8.5
Merged-chr19-32180353-4	chr19	32179873	32180873	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	30640.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-80665349-4	chr1	80664870	80665870	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285927)	promoter-TSS (NM_001285927)	-18.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121510130-4	chr10	121509708	121510708	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33958.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-49019978-4	chr14	49019459	49020459	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207214, intron 13 of 17)	intron (NM_207214, intron 13 of 17)	-46590.0	NM_001360070	74385.0	Mm.379235	NM_144535	ENSMUSG00000036291	Ap5m1	4932432K03Rik|Mu5|Mudeng	adaptor-related protein complex 5, mu 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41442623-6	chr19	41442128	41443128	+	998.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57558.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4980384-3	chr11	4979916	4980916	+	998.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243043, intron 1 of 22)	MLT1E3|LTR|ERVL-MaLR	-6408.0	NM_001355659	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8122138-3	chr10	8121644	8122644	+	998.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-166021.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	1.0	23.0	9.5	1.0	21.5	12.0
Merged-chr17-67341690-4	chr17	67341198	67342198	+	998.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	12761.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	10.0	48.0	16.5	10.5	45.5	15.0
Merged-chr1-53845509-4	chr1	53845001	53846001	+	998.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 21 of 28)	intron (NM_001001883, intron 21 of 28)	-3923.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	13.0	27.0	23.0	10.5	30.0	19.0
Merged-chr11-119091571-4	chr11	119091117	119092117	+	998.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5380.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96430374-4	chr10	96429871	96430871	+	998.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-186630.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180276081-4	chr2	180275574	180276574	+	998.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2609.0	NM_145851	252966.0	Mm.386884	NM_145851	ENSMUSG00000038990	Cables2	ik3-2	CDK5 and Abl enzyme substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-82923705-4	chr10	82923208	82924208	+	998.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	57082.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	5.0	14.5	3.0	1.0	5.0	7.0
Merged-chr11-120159013-4	chr11	120158507	120159507	+	998.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-7656.0	NM_001164798	72055.0	Mm.253403	NM_024249	ENSMUSG00000061306	Slc38a10	1810073N04Rik	solute carrier family 38, member 10	protein-coding	9.0	22.0	25.0	5.0	11.0	13.5
Merged-chr9-60743385-4	chr9	60742899	60743899	+	998.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	30278.0	NM_026235	67557.0	Mm.44546	NM_026235	ENSMUSG00000034839	Larp6	5430431G03Rik|AI552438|Achn	La ribonucleoprotein domain family, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11698508-4	chr19	11698003	11699003	+	998.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033283, intron 1 of 5)	intron (NM_001033283, intron 1 of 5)	1448.0	NM_001033283	225923.0	Mm.297596	NM_001033283	ENSMUSG00000055933	Oosp3	Gm97	oocyte secreted protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11452211-4	chr8	11451710	11452710	+	998.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25719.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-144242671-4	chr1	144242159	144243159	+	998.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6445.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60538802-5	chr11	60538229	60539229	+	998.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172943, exon 1 of 4)	exon (NM_172943, exon 1 of 4)	1046.0	NM_172943	268420.0	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116129343-5	chr3	116128732	116129732	+	998.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011693, intron 1 of 8)	intron (NM_011693, intron 1 of 8)	456.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	65.5	180.5	158.0	42.5	144.0	109.5
Merged-chr9-35039319-6	chr9	35038702	35039702	+	998.1904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77526.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	7.0	34.0	6.5	7.0	33.5	6.5
Merged-chr17-28513931-4	chr17	28513449	28514449	+	998.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16912.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	1.5	9.5	7.5	6.5	7.0	11.5
Merged-chr16-50046083-7	chr16	50045587	50046587	+	998.1785890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045935, intron 1 of 3)	intron (NR_045935, intron 1 of 3)	26765.0	NR_045935	224180.0	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74997464-4	chr1	74996942	74997942	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029342, intron 2 of 4)	MTC|LTR|ERVL-MaLR	-45770.0	NM_010544	16147.0	Mm.439736	NM_010544	ENSMUSG00000006538	Ihh	HHG-2	Indian hedgehog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180692798-4	chr2	180692304	180693304	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_111965)	promoter-TSS (NR_111965)	-756.0	NR_111965	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40414589-4	chr9	40414158	40415158	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 1 of 20)	RLTR16C_MM|LTR|ERVK	-38241.0	NM_001357621	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	17.5	23.0	60.0	32.5	22.5	51.0
Merged-chr16-91740723-2	chr16	91740223	91741223	+	998.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	11352.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90789770-4	chr5	90789201	90790201	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3600.0	NM_203320	330122.0	Mm.244289	NM_203320	ENSMUSG00000029379	Cxcl3	Dcip1|Gm1960	chemokine (C-X-C motif) ligand 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6728376-4	chr2	6727879	6728879	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 3 of 15)	L1_Mus2|LINE|L1	-6717.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-41743986-4	chr3	41743509	41744509	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291048, intron 1 of 4)	intron (NM_001291048, intron 1 of 4)	1391.0	NM_027271	73852.0	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-24987539-4	chr19	24987039	24988039	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR78|LTR|ERV1	-11990.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	8.5	54.0	40.0	24.5	31.0	42.0
Merged-chr1-84946210-4	chr1	84945690	84946690	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11107.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142723743-2	chr5	142723243	142724243	+	998.1666869999999	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001122730)	TTS (NM_001122730)	21642.0	NM_146257	243328.0	Mm.125942	NM_146257	ENSMUSG00000050822	Slc29a4	ENT4|mPMAT	solute carrier family 29 (nucleoside transporters), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-75400952-4	chr4	75400454	75401454	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44A|LTR|ERVK	-122662.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95507589-4	chr9	95507104	95508104	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357977, intron 1 of 25)	intron (NM_001357977, intron 1 of 25)	4392.0	NM_001357975	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88597216-4	chr17	88596709	88597709	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29346.0	NM_029858	77057.0	Mm.482203	NM_029858	ENSMUSG00000033855	Ston1	4921524J06Rik|C86231|Salf|Sblf	stonin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-24206299-4	chr18	24205804	24206804	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001361200, exon 1 of 13)	5' UTR (NM_001361200, exon 1 of 13)	310.0	NM_001160404	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-79721535-4	chr7	79721032	79722032	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001113471, exon 9 of 9)	exon (NM_001113471, exon 9 of 9)	-7346.0	NM_001291222	16576.0	Mm.101633	NM_010626	ENSMUSG00000050382	Kif7	-	kinesin family member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-98062038-4	chr6	98061531	98062531	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70248.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-77267228-4	chr5	77266732	77267732	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011263, intron 1 of 3)	intron (NM_011263, intron 1 of 3)	1738.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139640940-3	chr4	139640436	139641436	+	998.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175438, intron 9 of 14)	intron (NM_175438, intron 9 of 14)	-3106.0	NR_105987	102465617.0		NR_105987	ENSMUSG00000098569	Mir7020	Gm27759|mmu-mir-7020	microRNA 7020	ncRNA	2.5	0.5	7.0	14.5	17.5	13.0
Merged-chr12-8312660-2	chr12	8312160	8313160	+	998.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021429)	promoter-TSS (NM_021429)	-773.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-31117156-2	chr7	31116658	31117658	+	998.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011322, intron 5 of 5)	intron (NM_011322, intron 5 of 5)	-1832.0	NM_001110252	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	0.0	11.0	1.5	0.0	4.0	0.0
Merged-chr15-42676155-2	chr15	42675655	42676655	+	998.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286062, intron 1 of 8)	intron (NM_001286062, intron 1 of 8)	822.0	NM_001286062	11600.0	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-104195965-2	chr11	104195465	104196465	+	998.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9638.0	NM_199019	237958.0	Mm.117063	NM_199019	ENSMUSG00000049506	Sppl2c	4933407P14Rik|IMP5	signal peptide peptidase 2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53404805-4	chr19	53404326	53405326	+	998.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14192.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155559683-4	chr4	155559163	155560163	+	998.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001160017)	TTS (NM_001160017)	-2718.0	NM_138671	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	1.0	6.5	5.5	1.0	15.0	5.5
Merged-chr1-177491201-4	chr1	177490687	177491687	+	998.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45366.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-61998997-4	chr15	61998514	61999514	+	998.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13673.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91612704-4	chr16	91612242	91613242	+	998.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6257.0	NM_001099738	246738.0	Mm.101927	NM_138664	ENSMUSG00000039763	Dnajc28	BC020175|ORF28	DnaJ heat shock protein family (Hsp40) member C28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-154061515-4	chr1	154060986	154061986	+	998.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-139701.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-17264890-4	chr19	17264277	17265277	+	998.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74728.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	47.0	121.0	134.5	53.0	75.5	79.5
Merged-chr7-114317569-4	chr7	114317068	114318068	+	998.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_029437, intron 3 of 3)	intron (NR_029437, intron 3 of 3)	-41452.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	0.0	7.5	2.5	13.5	10.5	7.5
Merged-chr13-110684623-4	chr13	110684122	110685122	+	998.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-218877.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	23.5	23.0	8.5	6.5	14.0	3.0
Merged-chr15-66812703-4	chr15	66812208	66813208	+	998.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009192, exon 2 of 9)	5' UTR (NM_009192, exon 2 of 9)	19121.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84245508-4	chr1	84245011	84246011	+	998.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003948, intron 1 of 2)	L1_Mus1|LINE|L1	-26550.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136117171-3	chr1	136116670	136117670	+	998.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081023, intron 40 of 43)	intron (NM_001081023, intron 40 of 43)	14013.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-42879800-3	chr4	42879297	42880297	+	998.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-5563.0	NM_177785	277773.0	Mm.212727	NM_177785	ENSMUSG00000050141	Fam205c	4931430D02|FAM205CP	family with sequence similarity 205, member C	protein-coding	10.0	21.5	13.5	30.0	36.5	16.0
Merged-chr14-69825050-2	chr14	69824550	69825550	+	998.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15357.0	NM_028560	73523.0	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25458561-5	chr14	25458059	25459059	+	998.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310666)	promoter-TSS (NM_001310666)	-626.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84070379-4	chr8	84069866	84070866	+	998.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009055, intron 1 of 20)	intron (NM_009055, intron 1 of 20)	3530.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	44.0	58.0	50.0	32.5	120.0	87.5
Merged-chr11-59540318-4	chr11	59539797	59540797	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1272.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13627777-4	chr8	13627239	13628239	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 2 of 23)	intron (NM_009025, intron 2 of 23)	49848.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134456801-4	chr5	134456307	134457307	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001244936)	promoter-TSS (NM_001244936)	-91.0	NM_001081464	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-100454372-4	chr9	100453868	100454868	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32105.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	19.0	9.0	10.0	18.5	22.5	24.0
Merged-chr19-60611960-4	chr19	60611431	60612431	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30908.0	NM_001172096	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	7.5	18.5	12.0	1.5	1.0	8.0
Merged-chr11-16967966-4	chr11	16967423	16968423	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16513.0	NM_176982	319701.0	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	1.0	21.0	7.0	1.0	13.0	7.0
Merged-chr11-114683949-4	chr11	114683460	114684460	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	ORR1B2|LTR|ERVL-MaLR	8492.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123990874-4	chr4	123990374	123991374	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	73441.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	4.5	0.0	16.5	4.0	4.5	17.5
Merged-chr12-70457221-4	chr12	70456703	70457703	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028339, intron 3 of 7)	intron (NM_028339, intron 3 of 7)	4049.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	0.0	1.0	1.0	1.0	0.5	2.0
Merged-chr15-38292188-4	chr15	38291663	38292663	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001289471, exon 5 of 5)	3' UTR (NM_001289471, exon 5 of 5)	7737.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-81036257-4	chr3	81035806	81036806	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019971)	promoter-TSS (NM_019971)	-110.0	NM_019971	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93334523-4	chr2	93334035	93335035	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183180)	promoter-TSS (NM_183180)	-48.0	NM_183180	241556.0	Mm.274159	NM_183180	ENSMUSG00000027217	Tspan18	2610042G18Rik|6720430O15|BB226562	tetraspanin 18	protein-coding	0.0	4.0	1.0	2.0	11.5	0.5
Merged-chr4-59214910-4	chr4	59214404	59215404	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011673, intron 5 of 8)	intron (NM_011673, intron 5 of 8)	25354.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	15.5	23.5	12.5	1.5	20.5	14.5
Merged-chr1-156684238-3	chr1	156683731	156684731	+	998.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145413, intron 7 of 7)	LTR41B|LTR|ERVL	-9892.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	13.0	4.0	21.5	21.0	51.0	27.0
Merged-chr7-49253190-4	chr7	49252724	49253724	+	998.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 1 of 37)	intron (NM_175272, intron 1 of 37)	7035.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118811139-4	chr9	118810644	118811644	+	998.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 4 of 13)	ORR1E|LTR|ERVL-MaLR	99452.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	1.5	1.0	2.5	1.5	2.0	3.5
Merged-chr14-65381729-4	chr14	65381232	65382232	+	998.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199029, intron 1 of 9)	intron (NM_199029, intron 1 of 9)	23056.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	7.5	41.0	16.0	34.5	28.0	38.5
Merged-chr17-65784820-4	chr17	65784324	65785324	+	998.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152099, intron 2 of 20)	MTC|LTR|ERVL-MaLR	1469.0	NR_104465	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	7.0	3.0	14.0	0.0	3.0	7.5
Merged-chr12-79190980-4	chr12	79190506	79191506	+	998.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362269)	promoter-TSS (NM_001362269)	-45.0	NM_001362269	17252.0	Mm.291799	NM_021557	ENSMUSG00000066441	Rdh11	2610319N22Rik|AI428145|AU045252|Arsdr1|C85936|CGI-82|HCBP12|M42C60|Mdt1|Psdr1|SCALD|UBE-1c1|Ube-1c|ralR1	retinol dehydrogenase 11	protein-coding	3.5	30.5	14.0	3.5	33.5	14.0
Merged-chr11-54492754-4	chr11	54492256	54493256	+	998.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173753, intron 9 of 17)	intron (NM_173753, intron 9 of 17)	-30089.0	NM_001252494	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-9535048-4	chr11	9534582	9535582	+	998.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 47 of 61)	intron (NM_178259, intron 47 of 61)	343140.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152330813-2	chr2	152330313	152331313	+	998.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355282, intron 2 of 12)	intron (NM_001355282, intron 2 of 12)	1612.0	NM_001083921	24105.0	Mm.182145	NM_019705	ENSMUSG00000027466	Rbck1	AL033326|HOIL-1|HOIL-1L|UIP28|Ubce7ip3	RanBP-type and C3HC4-type zinc finger containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107336085-2	chr9	107335531	107336531	+	998.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133984, intron 4 of 10)	intron (NM_133984, intron 4 of 10)	2319.0	NM_133984	69536.0	Mm.259467	NM_133984	ENSMUSG00000032579	Hemk1	2310008M14Rik|AW049265	HemK methyltransferase family member 1	protein-coding	7.0	3.5	10.5	0.0	0.0	3.0
Merged-chr7-43645353-2	chr7	43644853	43645853	+	998.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028236, intron 4 of 5)	MTD|LTR|ERVL-MaLR	10614.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-70244119-2	chr10	70243619	70244619	+	998.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1157.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111537108-2	chr12	111536608	111537608	+	998.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173363)	promoter-TSS (NM_173363)	-993.0	NM_178041	217869.0	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22357981-4	chr16	22357490	22358490	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63002.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120721159-2	chr8	120720659	120721659	+	998.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15199.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126132415-2	chr4	126131910	126132910	+	998.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 6 of 10)	MIR3|SINE|MIR	-15593.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	50.5	127.5	52.5	50.0	118.0	52.5
Merged-chr1-130877167-2	chr1	130876667	130877667	+	998.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026976, intron 4 of 7)	intron (NM_026976, intron 4 of 7)	10244.0	NM_053095	93672.0	Mm.196691	NM_053095	ENSMUSG00000026420	Il24	FISP|Mda-7|Mda7|St16	interleukin 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-61042903-1	chr1	61042403	61043403	+	998.0	f0_balb.idr	Intergenic	MLT1K-int|LTR|ERVL-MaLR	64989.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	2.0	4.5	1.0	1.0	0.0	5.0
Merged-chr17-35866560-4	chr17	35866053	35867053	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175242)	promoter-TSS (NM_175242)	-62.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	28.0	27.5	31.5	18.5	86.0	30.0
Merged-chr13-115138835-2	chr13	115138335	115139335	+	998.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36871.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117706422-4	chr11	117705933	117706933	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 3 of 21)	L1ME1|LINE|L1	52144.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167532220-2	chr2	167531720	167532720	+	998.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5975.0	NM_011427	20613.0	Mm.2093	NM_011427	ENSMUSG00000042821	Snai1	Sna|Sna1|Snail|Snail1	snail family zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112950544-4	chr12	112950042	112951042	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-8400.0	NM_001316724	66174.0	Mm.7070	NM_025399	ENSMUSG00000002804	Nudt14	1110030M18Rik|UGPPase	nudix (nucleoside diphosphate linked moiety X)-type motif 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-147013880-3	chr2	147013361	147014361	+	998.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356402, intron 1 of 28)	intron (NM_001356402, intron 1 of 28)	862.0	NM_001356402	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	172.0	397.5	262.5	226.0	373.0	398.5
Merged-chr7-145269450-1	chr7	145268950	145269950	+	998.0	f1_c57bl6.idr	intron (NR_132643, intron 8 of 22)	intron (NR_132643, intron 8 of 22)	14561.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	5.5	2.0	2.5	4.5	8.5	3.0
Merged-chr12-33380247-4	chr12	33379728	33380728	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131031, intron 2 of 3)	B3|SINE|B2	14532.0	NR_131031	75836.0	Mm.410807	NR_131031	ENSMUSG00000085664	Atxn7l1os2	4930556N08Rik	ataxin 7-like 1, opposite strand 2	ncRNA	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr7-16582408-4	chr7	16581922	16582922	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172739, intron 1 of 6)	intron (NM_172739, intron 1 of 6)	-31402.0	NR_136928	102634559.0	Mm.421602	NR_136928	ENSMUSG00000100583	Gm29443	-	predicted gene 29443	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99970772-4	chr15	99970253	99971253	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284522, intron 1 of 15)	RMER6A|LTR|ERVK	688.0	NM_001284522	207214.0	Mm.28811	NM_001024526	ENSMUSG00000023025	Larp4	DXErtd793|DXErtd793e	La ribonucleoprotein domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45680047-2	chr7	45679547	45680547	+	998.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271578, intron 3 of 3)	Tigger7|DNA|TcMar-Tigger	-3975.0	NM_001358870	243967.0	Mm.291240	NM_001033356	ENSMUSG00000070564	Ntn5	Gm484	netrin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154765846-4	chr2	154765321	154766321	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25289.0	NM_001139512	19383.0	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	5.0	9.5	3.0	1.0	5.0	2.0
Merged-chr14-65099542-2	chr14	65099042	65100042	+	998.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1436.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59224118-4	chr10	59223594	59224594	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172939, exon 1 of 1)	3' UTR (NM_172939, exon 1 of 1)	2172.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87704668-2	chr16	87704168	87705168	+	998.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	ORR1C1|LTR|ERVL-MaLR	5714.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8522336-2	chr12	8521836	8522836	+	998.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	17230.0	NM_001038660	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	7.5	29.0	19.0	15.5	17.0	26.0
Merged-chr11-70617289-2	chr11	70616789	70617789	+	998.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001145537)	TTS (NM_001145537)	1395.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45693869-3	chr2	45693375	45694375	+	998.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2730.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106429874-1	chr9	106429374	106430374	+	998.0	f0_balb.idr	5' UTR (NM_001324534, exon 1 of 3)	5' UTR (NM_001324534, exon 1 of 3)	463.0	NM_009082	19944.0	Mm.288696	NM_009082	ENSMUSG00000048758	Rpl29	Rpl43	ribosomal protein L29	protein-coding	137.0	212.0	178.5	62.5	149.0	111.0
Merged-chr10-49049426-4	chr10	49048947	49049947	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	738490.0	NM_001358866	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	7.0	8.0	11.5	15.0	28.0	18.0
Merged-chr2-19274211-4	chr2	19273711	19274711	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081083, intron 10 of 19)	intron (NM_001081083, intron 10 of 19)	-70106.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64084536-4	chr9	64084039	64085039	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040743, intron 1 of 2)	intron (NR_040743, intron 1 of 2)	3778.0	NR_040743	76814.0	Mm.243771	NR_040743		Scarletltr	2600006L11Rik	Scarletltr, erythroid developmental long intergenic non-protein coding transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75657315-2	chr11	75656869	75657869	+	998.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080775, intron 1 of 31)	intron (NM_001080775, intron 1 of 31)	1354.0	NM_001080775	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	0.0	2.0	2.5	0.0	7.0	0.0
Merged-chr18-70618717-2	chr18	70618217	70619217	+	998.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010773, intron 5 of 6)	MTC|LTR|ERVL-MaLR	50425.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-176068127-4	chr1	176067646	176068646	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357846, intron 3 of 8)	ORR1F|LTR|ERVL-MaLR	145796.0	NM_001357845	319455.0	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118875682-2	chr9	118875182	118876182	+	998.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 11 of 13)	RMER15|LTR|ERVL	-50854.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105926581-4	chr1	105926089	105927089	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	63693.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122955806-4	chr7	122955305	122956305	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	14654.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77440658-2	chr11	77440158	77441158	+	998.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 12 of 14)	intron (NM_177710, intron 12 of 14)	-23255.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44504651-4	chr13	44504188	44505188	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12BD_Mm|LTR|ERVK	64961.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	14.5	30.5	22.5	11.5	86.5	26.0
Merged-chr10-80263389-2	chr10	80262889	80263889	+	998.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	PB1D9|SINE|Alu	-1602.0	NM_001122604	70248.0	Mm.148693	NM_133188	ENSMUSG00000069565	Dazap1	2410042M16Rik|mPrrp	DAZ associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-8084793-2	chr8	8084293	8085293	+	998.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	575980.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-86920807-4	chr10	86920305	86921305	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 30 of 68)	intron (NM_138673, intron 30 of 68)	87137.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19002359-3	chr10	19001826	19002826	+	998.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009397, exon 9 of 9)	3' UTR (NM_009397, exon 9 of 9)	9637.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117837122-2	chr5	117836622	117837622	+	998.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29717.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84912559-2	chr8	84912057	84913057	+	998.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_103491)	promoter-TSS (NR_103491)	-778.0	NR_103491	100503676.0	Mm.437155	NR_103491	ENSMUSG00000003812	Gm38426	-	predicted gene, 38426	ncRNA	0.0	0.5	0.5	0.0	0.0	4.5
Merged-chr13-55201335-2	chr13	55200835	55201835	+	998.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-8447.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113013729-2	chr12	113013229	113014229	+	998.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291444)	promoter-TSS (NM_001291444)	-779.0	NM_001291445	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-65042160-2	chr6	65041660	65042660	+	998.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355250)	promoter-TSS (NM_001355250)	-431.0	NM_001355250	13990.0	Mm.99113	NM_007958	ENSMUSG00000029920	Smarcad1	AV081750|AW226546|D6Pas1|Etl1|etl-1|mKIAA1122	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-99412884-4	chr13	99412385	99413385	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015515)	promoter-TSS (NR_015515)	-59.0	NR_015515	320893.0	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	10.5	21.5	13.5	1.5	19.0	7.5
Merged-chr8-126815464-2	chr8	126814964	126815964	+	998.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33556.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11322440-2	chr16	11321940	11322940	+	998.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028964)	promoter-TSS (NM_028964)	-464.0	NM_028964	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62037770-4	chr18	62037275	62038275	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84700.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	14.5	30.5	19.0	15.5	69.5	40.0
Merged-chr17-33930995-7	chr17	33930509	33931509	+	997.985718	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009059, intron 2 of 17)	intron (NM_009059, intron 2 of 17)	1115.0	NM_009059	19732.0	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	53.5	86.0	74.5	29.5	63.0	44.0
Merged-chr2-18694299-8	chr2	18693781	18694781	+	997.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4741.0	NM_001001334	381350.0	Mm.330024	NM_001001334	ENSMUSG00000037708	Spag6	Spag6l	sperm associated antigen 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44850410-4	chr7	44849921	44850921	+	997.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_030488)	TTS (NR_030488)	414.0	NM_001253920	67605.0	Mm.148007	NM_026270	ENSMUSG00000011096	Akt1s1	1110012J22Rik|AI227026|Lobe|Lobel|PRAS40	AKT1 substrate 1 (proline-rich)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155006747-4	chr1	155006247	155007247	+	997.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76517.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49901752-4	chr11	49901237	49902237	+	997.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347462)	promoter-TSS (NM_001347462)	-98.0	NM_029004	74563.0	Mm.258798	NM_029004	ENSMUSG00000020374	Rasgef1c	9130006A14Rik	RasGEF domain family, member 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-153250797-4	chr3	153250293	153251293	+	997.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 3 of 4)	intron (NM_011372, intron 3 of 4)	47856.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141737001-4	chr4	141736459	141737459	+	997.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	-9716.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	8.5	55.0	58.0	48.0	40.0	44.0
Merged-chr16-77084872-4	chr16	77084370	77085370	+	997.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 17 of 23)	intron (NM_013918, intron 17 of 23)	70801.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59906392-4	chr13	59905893	59906893	+	997.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-83246.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	14.0	26.0	15.5	11.5	23.5	17.0
Merged-chr12-102283100-4	chr12	102282529	102283529	+	997.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161365)	promoter-TSS (NM_001161365)	-45.0	NM_177620	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138194423-4	chr5	138193986	138194986	+	997.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178612)	TTS (NM_178612)	172.0	NM_177878	330216.0	Mm.19719	NM_177878	ENSMUSG00000049285	Mblac1	-	metallo-beta-lactamase domain containing 1	protein-coding	44.0	114.5	94.5	48.0	163.5	88.5
Merged-chr4-63410210-4	chr4	63409694	63410694	+	997.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6749.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146619680-3	chr6	146619178	146620178	+	997.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026281, intron 5 of 11)	intron (NM_026281, intron 5 of 11)	14914.0	NM_026281	67623.0	Mm.278037	NM_026281	ENSMUSG00000040234	Tm7sf3	2010003B14Rik|NARP1	transmembrane 7 superfamily member 3	protein-coding	5.5	22.0	12.5	41.0	55.0	68.0
Merged-chr14-30746483-3	chr14	30746019	30747019	+	997.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166531, intron 2 of 21)	intron (NM_001166531, intron 2 of 21)	30904.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	25.5	7.0	19.0	22.5	40.0	20.0
Merged-chr1-191599435-4	chr1	191598930	191599930	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178632, intron 7 of 19)	intron (NM_178632, intron 7 of 19)	23794.0	NM_001306204	77065.0	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	34.0	47.0	38.5	19.5	41.5	43.0
Merged-chr9-7774767-4	chr9	7774260	7775260	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133739, intron 2 of 4)	intron (NM_133739, intron 2 of 4)	-9630.0	NR_049191	100885830.0		NR_049191	ENSMUSG00000093615	Mir5618	Gm23685|mmu-mir-5618	microRNA 5618	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110843839-4	chr12	110843342	110844342	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_152102)	TTS (NR_152102)	2813.0	NR_152102	66709.0	Mm.390504	NR_152102		4921507G05Rik	-	RIKEN cDNA 4921507G05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94478018-4	chr10	94477529	94478529	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-36828.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152802380-4	chr2	152801881	152802881	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	B2_Mm2|SINE|B2	26108.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148550568-4	chr5	148550054	148551054	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	1119.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	7.5	8.0	8.5	9.5	10.0	7.0
Merged-chr8-46740200-4	chr8	46739690	46740690	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045750)	promoter-TSS (NR_045750)	445.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75832193-4	chr14	75831678	75832678	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	12786.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6384731-4	chr4	6384247	6385247	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016807, intron 4 of 8)	intron (NM_016807, intron 4 of 8)	19067.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-90679423-4	chr15	90678946	90679946	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025815)	promoter-TSS (NM_025815)	-58.0	NM_001357979	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	9.5	28.0	28.0	2.5	35.0	21.0
Merged-chr14-75015995-4	chr14	75015493	75016493	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198642)	promoter-TSS (NM_198642)	-34.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157201644-4	chr2	157201156	157202156	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011249, intron 1 of 21)	intron (NM_011249, intron 1 of 21)	2878.0	NM_011249	19650.0	Mm.244671	NM_011249	ENSMUSG00000027641	Rbl1	AW547426|PRB1|p107	RB transcriptional corepressor like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-133163913-4	chr1	133163416	133164416	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	32750.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44704348-4	chr10	44703865	44704865	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-245617.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-46930031-4	chr13	46929518	46930518	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010617)	promoter-TSS (NM_010617)	-300.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104817936-6	chr3	104817454	104818454	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008619, exon 1 of 20)	exon (NM_008619, exon 1 of 20)	351.0	NM_008619	17454.0	Mm.1597	NM_008619	ENSMUSG00000002227	Mov10	C77703|Mov-10	Moloney leukemia virus 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72113507-4	chr6	72113013	72114013	+	997.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	MTC|LTR|ERVL-MaLR	9427.0	NR_045163	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171247665-3	chr1	171247185	171248185	+	997.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153064)	promoter-TSS (NM_153064)	-563.0	NM_153064	226646.0	Mm.21669	NM_153064	ENSMUSG00000013593	Ndufs2	CI-49kD	NADH dehydrogenase (ubiquinone) Fe-S protein 2	protein-coding	38.5	158.5	132.5	82.5	149.0	134.5
Merged-chr19-56756506-3	chr19	56755965	56756965	+	997.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34093.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172321573-3	chr1	172321072	172322072	+	997.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008429, exon 4 of 4)	3' UTR (NM_008429, exon 4 of 4)	7750.0	NM_008429	16524.0	Mm.261168	NM_008429	ENSMUSG00000038026	Kcnj9	1700085N21Rik|Girk3|Kir3.3|mbGIRK3	potassium inwardly-rectifying channel, subfamily J, member 9	protein-coding	19.5	43.5	9.0	29.5	77.5	31.0
Merged-chr10-67114023-4	chr10	67113523	67114523	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13235.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140814610-4	chr5	140814105	140815105	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 1 of 3)	RMER17C|LTR|ERVK	15826.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59407957-4	chr4	59407461	59408461	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 5 of 16)	L1MA5|LINE|L1	30672.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92528759-4	chr5	92528258	92529258	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23101.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	10.5	13.0	18.5	9.5	12.5	18.5
Merged-chr17-78366282-4	chr17	78365800	78366800	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 13 of 16)	intron (NM_015800, intron 13 of 16)	51852.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86582865-4	chr11	86582354	86583354	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	1304.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85249578-4	chr11	85249081	85250081	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	14415.0	NR_028329	654810.0	Mm.209580	NR_028329	ENSMUSG00000085628	Appbp2os	D630032N06Rik	amyloid beta precursor protein (cytoplasmic tail) binding protein 2, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69995068-4	chr11	69994563	69995563	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291125)	promoter-TSS (NM_001291125)	-703.0	NM_001291125	78246.0	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94704116-4	chr11	94703611	94704611	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001007584, exon 1 of 2)	exon (NM_001007584, exon 1 of 2)	388.0	NM_001007584	432589.0	Mm.342314	NM_001007584	ENSMUSG00000056008	Gm11541	-	predicted gene 11541	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-9373326-4	chr11	9372840	9373840	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178259, exon 30 of 62)	exon (NM_178259, exon 30 of 62)	181398.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	3.0	1.5	1.0	1.5	1.5	4.5
Merged-chr2-166733101-4	chr2	166732607	166733607	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19275.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-12300348-4	chr12	12299840	12300840	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	38201.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-78197639-4	chr16	78197159	78198159	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57795.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78305694-4	chr15	78305204	78306204	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007781)	promoter-TSS (NM_007781)	17.0	NM_007781	12984.0	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32348492-4	chr18	32347973	32348973	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR40b|LTR|ERVL	-28744.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-104979342-4	chr5	104978833	104979833	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030239, intron 1 of 15)	intron (NM_030239, intron 1 of 15)	3384.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20714029-4	chr18	20713514	20714514	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 3 of 8)	intron (NM_019737, intron 3 of 8)	32390.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129512275-7	chr4	129511772	129512772	+	997.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1309.0	NM_010807	17357.0	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	17.0	66.5	37.0	71.0	137.0	60.5
Merged-chr6-87101606-2	chr6	87101106	87102106	+	997.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3140.0	NM_001167938	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49961543-2	chr11	49961043	49962043	+	997.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029004, intron 6 of 13)	intron (NM_029004, intron 6 of 13)	59382.0	NM_001347462	74563.0	Mm.258798	NM_029004	ENSMUSG00000020374	Rasgef1c	9130006A14Rik	RasGEF domain family, member 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-181846006-4	chr1	181845520	181846520	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3619.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34204509-4	chr17	34204005	34205005	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011530)	promoter-TSS (NM_011530)	26.0	NM_011530	21355.0	Mm.14814	NM_011530	ENSMUSG00000024339	Tap2	ABC18|AI462429|APT2|Abcb3|Ham-2|Ham2|MTP2|PSF2|RING11|Tap-2|Y1|jas	transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	25.0	81.5	73.5	30.5	98.5	80.0
Merged-chr5-3421411-4	chr5	3420911	3421911	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 3 of 7)	L1_Mus1|LINE|L1	77518.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-70992940-4	chr2	70992439	70993439	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 3 of 9)	B4A|SINE|B4	25435.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-130417466-4	chr1	130416951	130417951	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007827, intron 4 of 9)	intron (NM_007827, intron 4 of 9)	-5373.0	NR_151525	102640368.0		NR_151525	ENSMUSG00000087691	Gm15674	-	predicted gene 15674	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65070780-4	chr18	65070294	65071294	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031881, intron 1 of 29)	intron (NM_031881, intron 1 of 29)	47267.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	1.0	7.0	5.0	1.0	8.5	0.0
Merged-chr16-78235917-4	chr16	78235414	78236414	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	19540.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30604992-4	chr2	30604525	30605525	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030137, intron 1 of 1)	intron (NM_030137, intron 1 of 1)	9981.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-21985082-4	chr6	21984586	21985586	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081351)	promoter-TSS (NM_001081351)	-824.0	NM_001081351	214642.0	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54215989-3	chr13	54215483	54216483	+	997.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153432, intron 2 of 3)	intron (NR_153432, intron 2 of 3)	23850.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	8.5	21.0	7.0	0.0	0.5	1.5
Merged-chr9-108608180-4	chr9	108607757	108608757	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151664, intron 12 of 15)	B1_Mus1|SINE|Alu	-10645.0	NR_151688	74443.0	Mm.226534	NM_028944	ENSMUSG00000006675	P4htm	4933406E20Rik|AI853847|BB128974|HIF-PH4|HPH-4|P4H-TM|Ph-4	prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-50702538-4	chr10	50702023	50703023	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 16 of 41)	MTD|LTR|ERVL-MaLR	109854.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-137956055-4	chr3	137955550	137956550	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 3 of 8)	intron (NM_011932, intron 3 of 8)	25499.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	9.0	47.0	34.5	7.5	42.5	31.5
Merged-chr10-94090249-3	chr10	94089738	94090738	+	997.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 5 of 20)	intron (NM_053072, intron 5 of 20)	54237.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	27.0	69.5	40.5	3.5	17.0	11.0
Merged-chr3-18624040-4	chr3	18623542	18624542	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143565.0	NR_040544	73959.0	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-16887672-3	chr12	16887177	16888177	+	997.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7301.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	9.5	1.5	7.5	7.5	21.5	32.0
Merged-chr17-5796079-4	chr17	5795565	5796565	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2592.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78094670-4	chr11	78094161	78095161	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346762)	promoter-TSS (NM_001346762)	-6.0	NM_001346762	216971.0	Mm.119387	NM_145430	ENSMUSG00000037750	Fam222b	9630020I17Rik	family with sequence similarity 222, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-73247722-2	chr6	73247222	73248222	+	997.7999880000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019879)	promoter-TSS (NM_019879)	-783.0	NM_019879	56451.0	Mm.29845	NM_019879	ENSMUSG00000052738	Suclg1	1500000I01Rik|Sucla1	succinate-CoA ligase, GDP-forming, alpha subunit	protein-coding	7.5	17.0	6.0	18.5	6.0	8.0
Merged-chr10-86637103-4	chr10	86636615	86637615	+	997.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48412.0	NR_015572	66263.0	Mm.392261	NR_015572	ENSMUSG00000097412	1810014B01Rik	-	RIKEN cDNA 1810014B01 gene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22858242-4	chr11	22857742	22858742	+	997.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	1493.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91367269-4	chr16	91366756	91367756	+	997.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5527.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-33400184-4	chr14	33399681	33400681	+	997.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310452, intron 4 of 10)	MLT1C|LTR|ERVL-MaLR	10843.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54518756-4	chr14	54518253	54519253	+	997.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1283.0	NM_001313907	27374.0	Mm.196585	NM_013768	ENSMUSG00000023110	Prmt5	Jbp1|Skb1	protein arginine N-methyltransferase 5	protein-coding	2.5	10.0	20.0	5.0	11.0	17.5
Merged-chr5-117938435-4	chr5	117937966	117938966	+	997.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 21 of 27)	intron (NM_008712, intron 21 of 27)	-38304.0	NM_145564	231670.0	Mm.21912	NM_145564	ENSMUSG00000032898	Fbxo21	2810425J22Rik|AU016673	F-box protein 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139405694-4	chr5	139405180	139406180	+	997.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177000)	promoter-TSS (NM_177000)	-707.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	16.5	57.0	49.0	12.5	58.0	56.0
Merged-chr5-137630775-4	chr5	137630257	137631257	+	997.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033148, intron 1 of 21)	intron (NR_033148, intron 1 of 21)	1634.0	NR_033148	100316903.0	Mm.200763	NR_033148		Gm20605	Lrch4-sap25	predicted gene 20605	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131700584-4	chr1	131700084	131701084	+	997.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311096, intron 4 of 4)	intron (NM_001311096, intron 4 of 4)	11889.0	NM_145509	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	16.0	22.0	31.0	18.5	15.5	18.0
Merged-chr2-172406339-4	chr2	172405836	172406836	+	997.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080820, intron 1 of 6)	intron (NM_001080820, intron 1 of 6)	12542.0	NM_001276423	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70111044-4	chr14	70110595	70111595	+	997.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021328, intron 1 of 8)	intron (NM_021328, intron 1 of 8)	11002.0	NM_001360404	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53794089-4	chr11	53793573	53794573	+	997.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	23600.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65533081-4	chr9	65532536	65533536	+	997.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47051.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	6.5	16.5	24.0	10.0	33.5	18.5
Merged-chr19-16050333-3	chr19	16049826	16050826	+	997.7666630000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65251.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	15.0	32.0	22.5	3.5	1.5	2.5
Merged-chr7-129994930-4	chr7	129994446	129995446	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	32781.0	NR_046077	100043150.0	Mm.334264	NR_046077	ENSMUSG00000108504	Gm4265	-	predicted gene 4265	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122894956-4	chr5	122894474	122895474	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003953, intron 12 of 22)	intron (NM_001003953, intron 12 of 22)	5376.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	3.5	37.5	24.0	11.0	28.0	14.5
Merged-chr2-50687525-4	chr2	50687035	50688035	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-222149.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95418034-4	chr10	95417518	95418518	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045339, intron 1 of 4)	intron (NR_045339, intron 1 of 4)	643.0	NR_045338	70523.0	Mm.158398	NR_045338	ENSMUSG00000097766	5730420D15Rik	-	RIKEN cDNA 5730420D15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66226072-4	chr7	66225569	66226569	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	116554.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130954555-4	chr2	130954064	130955064	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009730, intron 6 of 28)	intron (NM_009730, intron 6 of 28)	48069.0	NM_009730	11990.0	Mm.119936	NM_009730	ENSMUSG00000027312	Atrn	AW558010|Mgca|mg	attractin	protein-coding	7.0	27.5	19.0	6.5	18.0	23.0
Merged-chr2-59395526-8	chr2	59395020	59396020	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13C1|LTR|ERVK	-8838.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-8081019-4	chr14	8080501	8081501	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025938, intron 1 of 5)	intron (NM_025938, intron 1 of 5)	688.0	NM_025938	67053.0	Mm.210048	NM_025938	ENSMUSG00000023156	Rpp14	2610511E03Rik|AA682089	ribonuclease P 14 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60089340-4	chr2	60088838	60089838	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 1 of 35)	intron (NM_001001182, intron 1 of 35)	36402.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80257802-4	chr18	80257319	80258319	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025861, intron 2 of 5)	intron (NM_025861, intron 2 of 5)	1513.0	NM_025861	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	8.0	28.5	7.5	28.5	15.0	20.5
Merged-chr11-67559774-4	chr11	67559255	67560255	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008088, intron 1 of 13)	intron (NM_008088, intron 1 of 13)	-26745.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.0	4.0	0.0	0.0	0.0	0.5
Merged-chr7-111015108-4	chr7	111014614	111015614	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13837.0	NM_009431	22083.0	Mm.255858	NM_009431	ENSMUSG00000005609	Ctr9	AA409336|Sh2bp1|Tsbp|Tsp|mKIAA0155	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65490015-4	chr5	65489513	65490513	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133697, intron 1 of 4)	intron (NM_133697, intron 1 of 4)	2822.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152315833-4	chr3	152315291	152316291	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162375, intron 7 of 13)	intron (NM_001162375, intron 7 of 13)	24616.0	NM_174868	215708.0	Mm.135018	NM_174868	ENSMUSG00000054942	Miga1	A930038D06|AI852168|C030011O14Rik|Fam73a|Mita1	mitoguardin 1	protein-coding	6.5	11.5	7.5	12.5	12.5	6.5
Merged-chr10-79506864-4	chr10	79506374	79507374	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24216.0	NR_105874	102465548.0		NR_105874	ENSMUSG00000098414	Mir6909	Gm27727|mmu-mir-6909	microRNA 6909	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27027602-4	chr17	27027105	27028105	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149749, intron 1 of 6)	intron (NR_149749, intron 1 of 6)	1022.0	NM_007523	12018.0	Mm.2443	NM_007523	ENSMUSG00000057789	Bak1	Bak|N-BAK1|N-Bak	BCL2-antagonist/killer 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95851816-4	chr15	95851306	95852306	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253813, intron 2 of 20)	intron (NM_001253813, intron 2 of 20)	-21734.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-18036091-4	chr5	18035607	18036607	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCa|LINE|L1	73537.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55821106-4	chr16	55820590	55821590	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159395, intron 2 of 12)	intron (NM_001159395, intron 2 of 12)	1048.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-30896646-7	chr6	30896064	30897064	+	997.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_054073)	TTS (NM_054073)	230.0	NR_149738	54160.0	Mm.39896	NM_017478	ENSMUSG00000025607	Copg2	AW227625|gamma-2-COP	coatomer protein complex, subunit gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-57540382-4	chr8	57539864	57540864	+	997.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 6 of 11)	intron (NM_001167981, intron 6 of 11)	28521.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46507446-4	chr4	46506921	46507921	+	997.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029077, exon 6 of 6)	exon (NM_029077, exon 6 of 6)	18092.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	0.0	0.5	4.0	2.0	6.5	1.5
Merged-chr13-37742391-4	chr13	37741847	37742847	+	997.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83691.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.0	3.0	10.5	0.5	7.0	21.5
Merged-chr12-86888241-4	chr12	86887732	86888732	+	997.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3418.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-128245132-4	chr1	128244654	128245654	+	997.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356529, intron 1 of 12)	intron (NM_001356529, intron 1 of 12)	1017.0	NM_001356529	67812.0	Mm.293321	NM_026390	ENSMUSG00000026353	Ubxn4	1300013G12Rik|Ubxd2|mKIAA0242	UBX domain protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108568063-4	chr6	108567563	108568563	+	997.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55104.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	42.0	98.5	48.0	42.5	148.5	84.5
Merged-chr13-21181012-4	chr13	21180520	21181520	+	997.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009054, intron 1 of 7)	CpG	1089.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-98333384-4	chr9	98332875	98333875	+	997.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357445, intron 1 of 3)	MTD|LTR|ERVL-MaLR	36805.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	23.0	22.5	12.5	1.5	19.5	5.5
Merged-chr5-125521375-4	chr5	125520876	125521876	+	997.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11042.0	NM_001190352	208151.0	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38427586-4	chr15	38427113	38428113	+	997.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	62934.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8957031-4	chr3	8956534	8957534	+	997.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	7112.0	NM_001025262	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-47215104-4	chr13	47214622	47215622	+	997.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 2 of 7)	intron (NM_146042, intron 2 of 7)	21119.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	21.5	78.5	44.5	36.5	58.5	55.0
Merged-chr1-136138544-4	chr1	136138157	136139157	+	997.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	7267.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61109691-2	chr18	61109191	61110191	+	997.7000119999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_001037859, exon 3 of 22)	exon (NM_001037859, exon 3 of 22)	4119.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33978705-4	chr2	33978208	33979208	+	997.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90762.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118595389-4	chr7	118594894	118595894	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331204, intron 2 of 2)	intron (NM_001331204, intron 2 of 2)	-1903.0	NM_001105252	74424.0	Mm.11068	NM_028930	ENSMUSG00000030650	Tmc5	4932443L08Rik|AU016085	transmembrane channel-like gene family 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-5016246-4	chr7	5015758	5016758	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025324, intron 1 of 1)	MIRb|SINE|MIR	750.0	NM_025324	66056.0	Mm.19974	NM_025324	ENSMUSG00000051184	Zfp524	0610012F07Rik|2300009P13Rik|Znf524	zinc finger protein 524	protein-coding	19.0	37.5	46.0	18.5	33.0	47.0
Merged-chr12-76538083-4	chr12	76537582	76538582	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	4522.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-71294863-3	chr12	71294359	71295359	+	997.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15025.0	NM_021532	59036.0	Mm.46662	NM_021532	ENSMUSG00000044548	Dact1	4921528D17Rik|AI115603|DAPPER|DAPPER1|FRODO|Frd1|Frodo1|MDpr1|MTNG3|THYEX3	dishevelled-binding antagonist of beta-catenin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59886684-4	chr10	59886181	59887181	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019965, intron 1 of 8)	intron (NM_019965, intron 1 of 8)	7090.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77704511-4	chr18	77704016	77705016	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178670, intron 1 of 4)	L1MC5|LINE|L1	9494.0	NM_178670	212163.0	Mm.23293	NM_178670	ENSMUSG00000047466	8030462N17Rik	Akd2|Ark2N	RIKEN cDNA 8030462N17 gene	protein-coding	10.5	22.0	34.5	26.5	17.5	32.0
Merged-chr1-34433379-4	chr1	34432892	34433892	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_039562)	promoter-TSS (NR_039562)	-193.0	NR_039562	100628580.0		NR_039562	ENSMUSG00000092852	Mir5103	mir-5103|mmu-mir-5103|mu-mir-5103	microRNA 5103	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88438085-4	chr4	88437597	88438597	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025760, intron 1 of 6)	intron (NM_025760, intron 1 of 6)	829.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	11.0	4.0	4.0	4.5	16.5	14.5
Merged-chr1-40324513-4	chr1	40324028	40325028	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133193)	promoter-TSS (NM_133193)	-61.0	NM_001356478	107527.0	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21728540-4	chr9	21728034	21729034	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252659, intron 1 of 17)	RMER4B|LTR|ERVK	4958.0	NM_010700	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-37852293-4	chr18	37851784	37852784	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007858, intron 25 of 26)	intron (NM_007858, intron 25 of 26)	2376.0	NR_105945	102465592.0		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117982759-3	chr10	117982260	117983260	+	997.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57301.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	13.5	24.0	32.5	60.0	61.5	71.0
Merged-chr18-9503206-4	chr18	9502742	9503742	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53088.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	5.5	3.0	3.0	14.5	0.0	12.0
Merged-chr1-163758015-4	chr1	163757516	163758516	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21567.0	NM_001305643	16579.0	Mm.4651	NM_010629	ENSMUSG00000026585	Kifap3	KAP-3|KAP3|SMAP	kinesin-associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-78820107-4	chr8	78819616	78820616	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001191004, intron 1 of 4)	MIR3|SINE|MIR	1036.0	NM_001191004	78651.0	Mm.28694	NM_030145	ENSMUSG00000031683	Lsm6	1500031N17Rik|2410088K19Rik|AI747288	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72263846-4	chr5	72263337	72264337	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 11 of 22)	intron (NR_003966, intron 11 of 22)	60494.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43994989-4	chr7	43994503	43995503	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010640)	promoter-TSS (NM_010640)	-874.0	NM_010640	16613.0	Mm.443378	NM_010640	ENSMUSG00000044485	Klk1b11	Klk11|mGK-11	kallikrein 1-related peptidase b11	protein-coding	5.5	3.0	0.0	0.0	8.5	0.0
Merged-chr9-118693058-2	chr9	118692558	118693558	+	997.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 14 of 27)	LTR50|LTR|ERVL	-18634.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	14.0	4.5	1.0	3.0	1.0
Merged-chr14-103008738-2	chr14	103008238	103009238	+	997.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 2 of 2)	RMER13B|LTR|ERVK	25065.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-101029242-7	chr12	101028736	101029736	+	997.6493529999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362342)	promoter-TSS (NM_001362342)	-345.0	NM_026681	68339.0	Mm.156217	NM_026681	ENSMUSG00000021182	Ccdc88c	0610010D24Rik|AV000935|AW324073|Daple|mKIAA1509	coiled-coil domain containing 88C	protein-coding	0.5	0.0	1.0	2.5	0.0	2.0
Merged-chr1-64616789-4	chr1	64616241	64617241	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_025964, exon 1 of 3)	5' UTR (NM_025964, exon 1 of 3)	427.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-55749971-4	chr17	55749464	55750464	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139138)	promoter-TSS (NM_139138)	-20.0	NM_139138	52614.0	Mm.210497	NM_139138	ENSMUSG00000032915	Adgre4	D17Ertd479e|Egf-tm7|Emr4|Fire|Gpr127	adhesion G protein-coupled receptor E4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-8339658-4	chr6	8339150	8340150	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302354, intron 2 of 3)	intron (NM_001302354, intron 2 of 3)	80362.0	NM_001302353	100036521.0	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-148805912-4	chr3	148805404	148806404	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	148731.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-69804862-4	chr14	69804371	69805371	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153514, intron 1 of 9)	intron (NM_153514, intron 1 of 9)	674.0	NM_153514	246710.0	Mm.102367	NM_153514	ENSMUSG00000022075	Rhobtb2	Dbc2|E130206H14Rik|mKIAA0717	Rho-related BTB domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164929242-4	chr2	164928733	164929733	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17483.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	6.0	6.0	5.0	3.0	1.5	3.5
Merged-chr15-99702098-4	chr15	99701595	99702595	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031842)	promoter-TSS (NM_031842)	-192.0	NM_031842	83797.0	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	0.5	3.0	2.0	0.0	0.0	0.0
Merged-chr11-77606980-4	chr11	77606477	77607477	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144825, intron 1 of 19)	intron (NM_144825, intron 1 of 19)	838.0	NM_144825	216965.0	Mm.340436	NM_144825	ENSMUSG00000017291	Taok1	2810468K05Rik|AU020252|D130018F14Rik|Map3k16|Markk|Psk2|mKIAA1361	TAO kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100588331-4	chr5	100587826	100588826	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16121.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88376939-4	chr10	88376447	88377447	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41B|LTR|ERVL	-2465.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83410407-4	chr15	83409923	83410923	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358643, intron 1 of 9)	intron (NM_001358643, intron 1 of 9)	22427.0	NM_011862	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34620429-4	chr6	34619909	34620909	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 1 of 13)	MLTR14|LTR|ERV1	21905.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	57.5	102.5	110.0	42.0	110.0	119.0
Merged-chr1-39493831-4	chr1	39493329	39494329	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	-15074.0	NM_001357521	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102657419-4	chr4	102656944	102657944	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67601.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	11.5	24.5	15.5	4.0	47.5	27.0
Merged-chr7-19028277-3	chr7	19027789	19028789	+	997.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360713, intron 1 of 22)	intron (NM_001360713, intron 1 of 22)	3912.0	NM_026605	68188.0	Mm.130902	NM_026605	ENSMUSG00000023118	Sympk	1500016F02Rik|4632415H16Rik|AA125406|AI449890|SPK|SYM	symplekin	protein-coding	8.0	6.5	6.0	1.0	32.5	20.5
Merged-chr4-150012731-4	chr4	150012242	150013242	+	997.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E2|LTR|ERVL-MaLR	-3719.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	31.0	111.5	57.0	48.5	88.0	70.0
Merged-chr2-102154969-4	chr2	102154476	102155476	+	997.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178886, intron 1 of 5)	Charlie19a|DNA|hAT-Charlie	31484.0	NM_178886	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	0.0	10.0	3.5	0.5	5.0	5.5
Merged-chr2-117378473-4	chr2	117377978	117378978	+	997.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-35601.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	8.0	13.0	8.5	33.5	36.5	18.0
Merged-chr10-8834097-4	chr10	8833635	8834635	+	997.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	51935.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	4.0	5.5	2.0	2.0	22.0	4.5
Merged-chr9-22342936-4	chr9	22342451	22343451	+	997.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028390, intron 20 of 23)	L1M4|LINE|L1	-12261.0	NR_033622	625603.0	Mm.37987	NR_033622		Gm6607	EG625603	40S ribosomal protein S20 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101765714-4	chr5	101765159	101766159	+	997.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173370, intron 1 of 12)	CpG	529.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	10.5	54.5	23.0	18.5	43.5	23.0
Merged-chr2-24962414-4	chr2	24961925	24962925	+	997.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355558)	promoter-TSS (NM_001355558)	3.0	NM_026044	67228.0	Mm.389248	NM_026044	ENSMUSG00000026975	Dph7	2810443J12Rik|AW060693|Wdr85	diphthamine biosynethesis 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108994587-4	chr8	108994099	108995099	+	997.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57739.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	11.5	6.0	4.0	3.0	13.5	3.0
Merged-chr3-146156390-4	chr3	146155887	146156887	+	997.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 1 of 13)	intron (NM_001005846, intron 1 of 13)	6213.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6273971-4	chr19	6273471	6274471	+	997.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2925.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91730330-7	chr2	91729835	91730835	+	997.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172669, exon 1 of 18)	5' UTR (NM_172669, exon 1 of 18)	197.0	NM_001080754	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	1.0	9.0	12.0	0.0	4.5	10.0
Merged-chr6-146222808-3	chr6	146222298	146223298	+	997.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 45 of 56)	intron (NM_019923, intron 45 of 56)	279425.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38400092-3	chr16	38399605	38400605	+	997.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134102, intron 9 of 10)	intron (NM_134102, intron 9 of 10)	33040.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4987440-3	chr18	4986953	4987953	+	997.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59136.0	NM_153153	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45964036-9	chr13	45963577	45964577	+	997.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 1 of 6)	CpG	914.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88383614-4	chr10	88383109	88384109	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004164, intron 1 of 20)	RMER10A|LTR|ERVL	4197.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103071153-4	chr14	103070636	103071636	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033242, intron 1 of 3)	intron (NM_001033242, intron 1 of 3)	920.0	NM_001033242	211286.0	Mm.295289	NM_001033242	ENSMUSG00000022125	Cln5	A730075N08Rik	ceroid-lipofuscinosis, neuronal 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8718515-4	chr19	8718009	8719009	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161413, intron 1 of 9)	intron (NM_001161413, intron 1 of 9)	-4612.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83906845-4	chr6	83906345	83907345	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-7508.0	NM_001166371	18139.0	Mm.132392	NM_008717	ENSMUSG00000030016	Zfp638	AI323587|Np220|Zfml|Znf638|mNP220	zinc finger protein 638	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34773745-4	chr11	34773160	34774160	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 1 of 51)	intron (NM_033374, intron 1 of 51)	10245.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167923761-4	chr2	167923264	167924264	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-8563.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-3082375-4	chr17	3081867	3082867	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003519, intron 1 of 7)	intron (NR_003519, intron 1 of 7)	1816.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-16102219-4	chr4	16101731	16102731	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61412.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	9.5	19.5	20.0	13.5	15.5	10.5
Merged-chr7-25220673-4	chr7	25220183	25221183	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207677)	promoter-TSS (NM_207677)	-742.0	NM_175436	210172.0	Mm.129371	NM_175436	ENSMUSG00000046541	Zfp526	D030024H03Rik|Znf526	zinc finger protein 526	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-43108021-4	chr16	43107530	43108530	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285805, intron 2 of 10)	intron (NM_001285805, intron 2 of 10)	-139254.0	NM_181058	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-62736701-4	chr1	62736193	62737193	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	33376.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-95665225-4	chr1	95664776	95665776	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159745, intron 1 of 3)	intron (NM_001159745, intron 1 of 3)	2318.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-54053645-5	chr5	54053193	54054193	+	997.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081103, intron 2 of 11)	intron (NM_001081103, intron 2 of 11)	55170.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53119579-2	chr4	53119079	53120079	+	997.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	40316.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	2.5	6.0	3.5	0.0	4.0	4.0
Merged-chr12-57228873-2	chr12	57228373	57229373	+	997.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	-1539.0	NM_001037746	328099.0	Mm.268180	NM_001037746	ENSMUSG00000079104	Prps1l3	AU021838|AW536152|Gm5081	phosphoribosyl pyrophosphate synthetase 1-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-82044665-3	chr6	82044156	82045156	+	997.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145570, intron 1 of 2)	intron (NM_145570, intron 1 of 2)	3028.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	14.0	4.5	10.0	48.5	73.5	66.5
Merged-chr14-84443474-4	chr14	84442992	84443992	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013753)	promoter-TSS (NM_001013753)	-71.0	NM_001013753	219228.0	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64771852-2	chr9	64771352	64772352	+	997.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-34096.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58554232-4	chr15	58553780	58554780	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	138812.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	23.0	60.5	44.0	17.5	69.5	39.0
Merged-chr9-63975511-3	chr9	63975001	63976001	+	997.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	46558.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-139003737-4	chr1	139003241	139004241	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	26084.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90650175-4	chr2	90649658	90650658	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27057.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121264067-1	chr10	121263567	121264567	+	997.5	f0_balb.idr	3' UTR (NM_029057, exon 12 of 12)	3' UTR (NM_029057, exon 12 of 12)	47329.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	15.5	38.0	20.5	18.5	43.5	44.5
Merged-chr7-45719653-2	chr7	45719153	45720153	+	997.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009077, intron 3 of 5)	intron (NM_009077, intron 3 of 5)	-1567.0	NM_001033170	73813.0	Mm.322591	NM_001033170	ENSMUSG00000054161	Fam83e	4930403C10Rik	family with sequence similarity 83, member E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33948661-2	chr17	33948161	33949161	+	997.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_020603, exon 12 of 15)	exon (NM_020603, exon 12 of 15)	2827.0	NM_019420	54218.0	Mm.11132	NM_019420	ENSMUSG00000067370	B3galt4	Gal-T2|Galt2	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4	protein-coding	8.5	2.0	9.0	2.5	2.0	3.0
Merged-chr17-57276946-4	chr17	57276385	57277385	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2215.0	NM_001163816	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	24.5	58.5	34.5	31.5	64.5	33.0
Merged-chr11-78358532-2	chr11	78358032	78359032	+	997.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001277290, exon 9 of 9)	3' UTR (NM_001277290, exon 9 of 9)	11822.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66091547-2	chr5	66091047	66092047	+	997.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	6632.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-82402822-4	chr8	82402316	82403316	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001254747)	promoter-TSS (NM_001254747)	-230.0	NM_008357	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	127.5	238.0	187.0	108.0	248.5	188.0
Merged-chr7-143470095-2	chr7	143469595	143470595	+	997.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3660.0	NM_008767	18400.0	Mm.271740	NM_008767	ENSMUSG00000000154	Slc22a18	AW260131|BWR1A|BWSCR1A|HET|ITM|Impt1|Orctl2|Slc22a1l|TSSC5|p45-BWR1A	solute carrier family 22 (organic cation transporter), member 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17373573-2	chr17	17372971	17373971	+	997.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025934)	promoter-TSS (NM_025934)	-861.0	NM_025934	67045.0	Mm.35117	NM_025934	ENSMUSG00000023852	Riok2	2010110K24Rik|2410085M17Rik	RIO kinase 2	protein-coding	47.0	56.5	59.5	35.0	62.5	42.5
Merged-chr17-31835784-2	chr17	31835284	31836284	+	997.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20020.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr16-16086945-4	chr16	16086449	16087449	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 5 of 18)	intron (NM_001355731, intron 5 of 18)	59902.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-3386807-4	chr6	3386295	3387295	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010156, intron 1 of 1)	intron (NM_010156, intron 1 of 1)	12776.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	43.5	50.5	31.0	8.0	8.5	16.5
Merged-chr7-128313697-2	chr7	128313197	128314197	+	997.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-15566.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73182583-2	chr15	73182083	73183083	+	997.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	2364.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-48884631-2	chr13	48884131	48885131	+	997.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033268, intron 17 of 17)	intron (NM_001033268, intron 17 of 17)	-13746.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58423567-2	chr1	58423072	58424072	+	997.5	f0_balb.idr|f0_c57.idr	intron (NM_001042634, intron 1 of 12)	CpG	516.0	NR_027854	12747.0	Mm.1761	NM_009905	ENSMUSG00000026034	Clk1	STY	CDC-like kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77974920-4	chr10	77974423	77975423	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3727.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79623754-4	chr11	79623265	79624265	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003283)	promoter-TSS (NR_003283)	-602.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11395163-4	chr2	11394648	11395648	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040615, intron 1 of 2)	RLTR25B|LTR|ERVK	3352.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-72835764-2	chr17	72835264	72836264	+	997.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027166)	promoter-TSS (NM_027166)	-864.0	NM_027166	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	96.5	269.0	240.0	91.5	400.5	276.5
Merged-chr13-45266420-4	chr13	45265909	45266909	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-123333.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	87.0	183.5	180.5	67.5	197.0	146.5
Merged-chr11-54703478-2	chr11	54702978	54703978	+	997.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84225.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145833383-2	chr2	145832883	145833883	+	997.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	47267.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8916497-4	chr3	8916010	8917010	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025434, intron 1 of 2)	intron (NM_025434, intron 1 of 2)	7347.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55587936-4	chr19	55587450	55588450	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	114254.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46704498-2	chr17	46703998	46704998	+	997.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357684, intron 1 of 14)	intron (NM_001357684, intron 1 of 14)	504.0	NM_009358	21770.0	Mm.295009	NM_009358	ENSMUSG00000059409	Ppp2r5d	B'delta|TEG-271|Tex271	protein phosphatase 2, regulatory subunit B', delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45595361-6	chr17	45594798	45595798	+	997.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357771, intron 1 of 13)	intron (NM_001357771, intron 1 of 13)	274.0	NM_001199116	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	2.0	4.5	1.0	2.0	4.5	1.0
Merged-chr10-81303515-4	chr10	81303011	81304011	+	997.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	10548.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-64527467-4	chr18	64526954	64527954	+	997.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10897.0	NM_001142950	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40229547-4	chr10	40229063	40230063	+	997.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042556, intron 7 of 9)	intron (NM_001042556, intron 7 of 9)	17416.0	NM_001042556	67239.0	Mm.11480	NM_023323	ENSMUSG00000038510	Rpf2	2810470K21Rik|AU040229|AU043242|Bxdc1	ribosome production factor 2 homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-22347657-4	chr6	22347128	22348128	+	997.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138587, intron 1 of 9)	intron (NM_138587, intron 1 of 9)	8453.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51941393-4	chr14	51940874	51941874	+	997.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18601.0	NM_001011687	497071.0	Mm.378602	NM_001011687	ENSMUSG00000068392	Rnase13	-	ribonuclease, RNase A family, 13 (non-active)	protein-coding	19.0	25.5	12.0	11.0	47.5	16.5
Merged-chr18-20713615-4	chr18	20713103	20714103	+	997.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 3 of 8)	intron (NM_019737, intron 3 of 8)	32801.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-16889644-4	chr6	16889176	16890176	+	997.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 1 of 6)	intron (NM_031198, intron 1 of 6)	8765.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71004473-4	chr17	71003947	71004947	+	997.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-1914.0	NM_026064	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	6.0	10.0	5.0	7.5	6.0	2.0
Merged-chr4-149793832-3	chr4	149793316	149794316	+	997.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19549.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	21.5	30.5	25.5	7.0	18.5	10.0
Merged-chr6-134310454-3	chr6	134309943	134310943	+	997.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153848, intron 8 of 8)	L1_Mus2|LINE|L1	-85886.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	6.0	1.0	0.5	3.5	13.5	7.0
Merged-chr6-82702888-4	chr6	82702325	82703325	+	997.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49960.0	NM_025882	66979.0	Mm.195753	NM_025882	ENSMUSG00000030042	Pole4	2400007P05Rik|5830430F06Rik	polymerase (DNA-directed), epsilon 4 (p12 subunit)	protein-coding	3.5	0.0	0.0	4.0	2.0	1.5
Merged-chr5-20951138-7	chr5	20950682	20951682	+	997.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030699, exon 1 of 1)	non-coding (NR_030699, exon 1 of 1)	193.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90641633-4	chr2	90641157	90642157	+	997.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-35558.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-46011067-4	chr16	46010544	46011544	+	997.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134480)	promoter-TSS (NM_001134480)	-631.0	NM_001134480	433022.0	Mm.380993	NM_001134480	ENSMUSG00000087141	Plcxd2	AW494639|EG433022	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34883533-4	chr17	34883032	34884032	+	997.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1432.0	NM_013484	12263.0	Mm.283217	NM_013484	ENSMUSG00000024371	C2	-	complement component 2 (within H-2S)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72272610-4	chr8	72272109	72273109	+	997.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32591.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	7.0	24.5	15.0	9.0	15.5	23.5
Merged-chr12-111416925-4	chr12	111416442	111417442	+	997.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028807)	promoter-TSS (NM_028807)	-488.0	NM_001289487	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-37471874-2	chr17	37471374	37472374	+	997.4166869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB7_4-LTR_MM|LTR|ERVK	5666.0	NM_146835	258832.0	Mm.377712	NM_146835	ENSMUSG00000029184	Olfr109	MOR250-1	olfactory receptor 109	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-45902105-4	chr1	45901612	45902612	+	997.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	23482.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46864276-4	chr19	46863774	46864774	+	997.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102471, intron 4 of 6)	intron (NM_001102471, intron 4 of 6)	98077.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-56659028-4	chr16	56658521	56659521	+	997.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014399, intron 16 of 27)	intron (NM_001014399, intron 16 of 27)	58429.0	NM_001357124	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	3.5	0.0	4.0	9.5	15.0	8.5
Merged-chr12-102450638-4	chr12	102450154	102451154	+	997.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10841.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	103.5	211.0	104.5	42.0	181.5	85.0
Merged-chr19-53394819-4	chr19	53394335	53395335	+	997.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-4201.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-67945970-2	chr14	67945470	67946470	+	997.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12398.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21310974-4	chr16	21310509	21311509	+	997.392822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14137.0	NR_046162	328646.0	Mm.404748	NR_046162	ENSMUSG00000096918	Gm16863	A830060N17	predicted gene, 16863	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-105013271-4	chr12	105012743	105013743	+	997.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3434.0	NM_172500	212073.0	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	KASH3|nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102647222-4	chr4	102646662	102647662	+	997.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57319.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	6.0	19.0	18.5	5.0	12.0	20.0
Merged-chr1-166429206-4	chr1	166428698	166429698	+	997.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19370.0	NM_175170	71592.0	Mm.192094	NM_175170	ENSMUSG00000040596	Pogk	9130401E23Rik|BASS2|mKIAA1513	pogo transposable element with KRAB domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126305619-4	chr4	126305118	126306118	+	997.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199473, intron 2 of 3)	L1MB8|LINE|L1	16085.0	NM_133883	100206.0	Mm.11285	NM_133883	ENSMUSG00000042558	Adprhl2	AI836109|Arh3	ADP-ribosylhydrolase like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29787637-4	chr2	29787124	29788124	+	997.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290496)	promoter-TSS (NM_001290496)	47.0	NM_001290496	227682.0	Mm.245739	NM_145520	ENSMUSG00000039826	Trub2	G430055L02Rik	TruB pseudouridine (psi) synthase family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119784449-4	chr8	119783950	119784950	+	997.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6034.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103021495-4	chr11	103021007	103022007	+	997.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4360.0	NM_026551	68087.0	Mm.277449	NM_026551	ENSMUSG00000020935	Dcakd	3010024O21Rik|6720485C15Rik|AI849483	dephospho-CoA kinase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117357023-8	chr5	117356519	117357519	+	997.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021539)	promoter-TSS (NM_021539)	-286.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	6.5	0.5	16.0	7.5	5.5	8.0
Merged-chr11-97993964-2	chr11	97993464	97994464	+	997.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_207231, intron 3 of 5)	intron (NM_207231, intron 3 of 5)	2209.0	NM_207231	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-42513401-4	chr18	42512907	42513907	+	997.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360881, intron 1 of 20)	intron (NM_001360881, intron 1 of 20)	1920.0	NR_110344	56070.0	Mm.270511	NM_001039474	ENSMUSG00000024498	Tcerg1	2410022J09Rik|2900090C16Rik|AI428505|CA150b|FBP23|FBP28|Taf2s|ca150|p144	transcription elongation regulator 1 (CA150)	protein-coding	21.0	22.5	38.5	10.5	27.0	20.5
Merged-chr19-29498104-4	chr19	29497596	29498596	+	997.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	23891.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128234999-4	chr7	128234486	128235486	+	997.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177001, exon 1 of 1)	3' UTR (NM_177001, exon 1 of 1)	-2371.0	NM_146205	233912.0	Mm.475117	NM_146205	ENSMUSG00000042178	Armc5	AW049683|BC032200	armadillo repeat containing 5	protein-coding	0.0	4.0	9.0	0.0	4.0	0.5
Merged-chr17-5978550-7	chr17	5978017	5979017	+	997.365051	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151772, intron 2 of 25)	intron (NR_151772, intron 2 of 25)	2931.0	NM_011523	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-20913879-2	chr5	20913379	20914379	+	997.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080977, intron 3 of 7)	intron (NM_001080977, intron 3 of 7)	31426.0	NM_177601	212090.0	Mm.347525	NM_177601	ENSMUSG00000045435	Tmem60	BC027828	transmembrane protein 60	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-136852666-2	chr3	136852166	136853166	+	997.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 2 of 13)	MLT1B|LTR|ERVL-MaLR	182600.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21946667-4	chr19	21946175	21947175	+	997.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	168335.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	15.5	18.5	3.5	13.5	8.5	19.5
Merged-chr4-56114097-4	chr4	56113611	56114611	+	997.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-581636.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94488549-3	chr16	94488047	94489047	+	997.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38082.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23844073-3	chr17	23843579	23844579	+	997.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027644)	promoter-TSS (NM_027644)	77.0	NM_027644	71003.0	Mm.328839	NM_027644	ENSMUSG00000024114	Prss41	4931440B09Rik|Tessp-1|Tessp1	protease, serine 41	protein-coding	0.0	2.5	7.0	11.5	0.5	5.5
Merged-chr1-186445044-3	chr1	186444540	186445540	+	997.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	113641.0	NR_131124	320449.0	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	0.0	0.5	8.5	1.5	1.5	1.5
Merged-chr17-26534904-4	chr17	26534385	26535385	+	997.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26413.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	306.0	575.5	453.5	268.5	515.0	343.5
Merged-chr18-53238574-4	chr18	53238062	53239062	+	997.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7100.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-19059487-4	chr2	19058986	19059986	+	997.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	61167.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164457035-4	chr2	164456561	164457561	+	997.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3910.0	NM_025575	66460.0	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180265076-4	chr1	180264574	180265574	+	997.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8774.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0.0	0.0	0.0	10.0	16.5	9.5
Merged-chr17-17884991-4	chr17	17884504	17885504	+	997.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1065.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	10.5	14.0	6.0	18.5	13.0	8.5
Merged-chr10-14086367-4	chr10	14085856	14086856	+	997.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010437, intron 2 of 8)	intron (NM_010437, intron 2 of 8)	119977.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	42.5	72.0	35.5	25.5	44.5	33.0
Merged-chr7-127025357-4	chr7	127024858	127025858	+	997.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010772, exon 2 of 5)	exon (NM_010772, exon 2 of 5)	1121.0	NM_010772	17188.0	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107134646-4	chr3	107134160	107135160	+	997.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	33093.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-116980283-4	chr8	116979793	116980793	+	997.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1334.0	NM_001357255	69528.0	Mm.272846	NM_027103	ENSMUSG00000031847	1700030J22Rik	-	RIKEN cDNA 1700030J22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-140963129-4	chr4	140962614	140963614	+	997.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355515, intron 1 of 7)	Lx8|LINE|L1	1843.0	NM_023374	67680.0	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39141195-4	chr18	39140699	39141699	+	997.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 10 of 21)	MTD|LTR|ERVL-MaLR	148054.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	8.5	1.0	13.0	5.5	11.5	6.5
Merged-chr14-77825297-4	chr14	77824804	77825804	+	997.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025384)	TTS (NM_025384)	-26336.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	19.0	19.0	24.0	19.0	4.5	1.5
Merged-chr13-111968762-4	chr13	111968266	111969266	+	997.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100830.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	42.0	59.5	87.0	31.0	79.0	96.5
Merged-chr19-44294901-4	chr19	44294436	44295436	+	997.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009128, exon 2 of 6)	exon (NM_009128, exon 2 of 6)	1260.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-48708260-4	chr6	48707778	48708778	+	997.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153175)	promoter-TSS (NM_153175)	-34.0	NM_153175	231931.0	Mm.321047	NM_153175	ENSMUSG00000047867	Gimap6	4833419H03Rik|Ian6|mFLJ00102	GTPase, IMAP family member 6	protein-coding	20.0	50.5	20.5	10.5	13.0	7.5
Merged-chr14-45552382-4	chr14	45551870	45552870	+	997.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045809, intron 3 of 6)	intron (NR_045809, intron 3 of 6)	8660.0	NR_045809	67651.0	Mm.55930	NR_045809	ENSMUSG00000115324	4930527F14Rik	-	RIKEN cDNA 4930527F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-37073448-3	chr3	37072946	37073946	+	997.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009350, intron 5 of 11)	L1_Mus3|LINE|L1	9790.0	NM_009350	21744.0	Mm.8122	NM_009350	ENSMUSG00000027719	Adad1	Tenr	adenosine deaminase domain containing 1 (testis specific)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70718538-5	chr8	70718077	70719077	+	997.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195253)	promoter-TSS (NM_001195253)	34.0	NM_001195253	100502950.0	Mm.52981	NM_001195253	ENSMUSG00000095026	Gm3336	100041434|2410018E23Rik	predicted gene 3336	protein-coding	13.5	43.5	43.0	17.5	36.5	52.0
Merged-chr15-25392632-4	chr15	25392126	25393126	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027395, intron 1 of 1)	L1MC1|LINE|L1	21138.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55487415-2	chr13	55486915	55487915	+	997.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177371, intron 1 of 14)	CpG	661.0	NM_001177371	56320.0	Mm.19016	NM_019813	ENSMUSG00000034675	Dbn1	-	drebrin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128798903-4	chr6	128798425	128799425	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-10284.0	NM_008527	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	63.0	163.5	102.0	41.5	106.0	77.5
Merged-chr6-108306423-4	chr6	108305914	108306914	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 4 of 61)	intron (NM_010585, intron 4 of 61)	93318.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-66143465-4	chr2	66142981	66143981	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18688.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3305457-2	chr12	3304957	3305957	+	997.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 1 of 5)	B2_Mm2|SINE|B2	4512.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70282307-4	chr9	70281789	70282789	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	74939.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0.0	5.0	6.5	3.0	7.5	2.0
Merged-chr6-148561282-4	chr6	148560777	148561777	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53032.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170742608-4	chr1	170742118	170743118	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 15 of 15)	Lx8|LINE|L1	98086.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100247176-4	chr13	100246663	100247663	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010870, intron 1 of 14)	intron (NM_010870, intron 1 of 14)	173.0	NM_010870	17951.0	Mm.290476	NM_010870	ENSMUSG00000071203	Naip5	Birc1e|Lgn1|Naip-rs3	NLR family, apoptosis inhibitory protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127895129-4	chr3	127894625	127895625	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027482, intron 1 of 1)	intron (NM_027482, intron 1 of 1)	1198.0	NM_027482	70617.0	Mm.317049	NM_027482	ENSMUSG00000050549	Fam241a	2700063A17Rik|5730508B09Rik|C80506	family with sequence similarity 241, member A	protein-coding	16.5	37.5	25.0	7.5	30.5	27.5
Merged-chr10-79533838-4	chr10	79533360	79534360	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302442)	promoter-TSS (NM_001302442)	-73.0	NM_001302389	50784.0	Mm.28873	NM_015817	ENSMUSG00000052151	Plpp2	Lpp2|PAP2-G|PAP2-gamma|PAP2c|Ppap2c	phospholipid phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29486760-2	chr17	29486292	29487292	+	997.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4253.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	8.0	8.0	14.0	3.5	25.5	9.0
Merged-chr19-29521204-4	chr19	29520697	29521697	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015567, intron 1 of 3)	intron (NR_015567, intron 1 of 3)	790.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29478820-4	chr19	29478309	29479309	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43178.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-107683829-4	chr7	107683315	107684315	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357437, intron 2 of 23)	intron (NM_001357437, intron 2 of 23)	-8028.0	NM_001357438	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109123353-4	chr4	109122848	109123848	+	997.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355190, intron 2 of 21)	RLTR19-int|LTR|ERVK	-5312.0	NM_001134791	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	10.0	4.0	9.0	4.5	7.5	11.0
Merged-chr13-80933114-4	chr13	80932611	80933611	+	997.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-7292.0	NR_103550	71416.0	Mm.415500	NR_103550		5430425K12Rik	-	RIKEN cDNA 5430425K12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-119004096-4	chr10	119003596	119004596	+	997.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	46403.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-145650755-4	chr3	145650262	145651262	+	997.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010516)	promoter-TSS (NM_010516)	-777.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	1.0	0.0	0.5	0.0	0.0	0.0
Merged-chr11-58978720-4	chr11	58978206	58979206	+	997.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053168, intron 1 of 5)	intron (NM_053168, intron 1 of 5)	613.0	NM_053168	94091.0	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	74.0	171.0	153.5	41.0	100.5	63.0
Merged-chr12-35418125-4	chr12	35417612	35418612	+	997.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116877.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	6.0	40.5	8.5	7.5	19.5	4.0
Merged-chr4-119293103-4	chr4	119292571	119293571	+	997.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011732, intron 2 of 7)	intron (NM_011732, intron 2 of 7)	1442.0	NM_011732	22608.0	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	36.0	33.0	64.5	42.0	88.5	92.0
Merged-chr6-134863369-4	chr6	134862870	134863870	+	997.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24415.0	NR_074084	14760.0	Mm.4787	NM_008157	ENSMUSG00000032641	Gpr19	-	G protein-coupled receptor 19	protein-coding	1.5	0.0	8.5	1.5	2.0	3.0
Merged-chr11-55147628-4	chr11	55147115	55148115	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172258, intron 3 of 10)	intron (NM_172258, intron 3 of 10)	4091.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101976168-4	chr15	101975668	101976668	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21881.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43571182-4	chr19	43570702	43571702	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41123.0	NM_008699	18089.0	Mm.56994	NM_008699	ENSMUSG00000044220	Nkx2-3	Nkx-2.3|Nkx2.3|tinman	NK2 homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128065752-4	chr2	128065251	128066251	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028765, intron 14 of 17)	RLTR16|LTR|ERVK	-60287.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80163914-4	chr18	80163407	80164407	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12425.0	NM_175028	240442.0	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138434702-4	chr4	138434214	138435214	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026689)	promoter-TSS (NM_026689)	42.0	NM_026689	68350.0	Mm.103413	NM_026689	ENSMUSG00000041241	Mul1	0610009K11Rik|AV000801|Gide	mitochondrial ubiquitin ligase activator of NFKB 1	protein-coding	60.5	141.5	100.5	36.0	135.0	116.0
Merged-chr11-5511551-4	chr11	5511052	5512052	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9089.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	175.5	391.5	345.0	137.5	325.0	209.5
Merged-chr1-153894444-4	chr1	153893955	153894955	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2809.0	NM_178244	240819.0	Mm.453236	NM_178244	ENSMUSG00000047053	Teddm1a	Epdd1|Teddm1|e9-1	transmembrane epididymal protein 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24387384-4	chr7	24386900	24387900	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12228.0	NM_028047	71997.0	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	21.0	24.5	20.0	2.0	17.0	9.0
Merged-chr11-46462183-4	chr11	46461709	46462709	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134250, intron 3 of 6)	intron (NM_134250, intron 3 of 6)	7278.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr12-111670943-4	chr12	111670479	111671479	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021273, exon 5 of 8)	exon (NM_021273, exon 5 of 8)	1359.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101375124-4	chr15	101374627	101375627	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5002.0	NM_028770	74127.0	Mm.440055	NM_028770	ENSMUSG00000037185	Krt80	1200016G03Rik|2310041I20Rik|Kb20	keratin 80	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102247730-4	chr15	102247259	102248259	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011244, intron 3 of 9)	CpG	-1259.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	7.5	43.5	30.5	21.0	59.5	17.5
Merged-chr18-46408200-4	chr18	46407701	46408701	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57615.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	2.5	12.0	7.5	2.0	5.0	3.0
Merged-chr18-36230824-4	chr18	36230326	36231326	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33666.0	NM_001167891	100042150.0	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50437926-4	chr16	50437442	50438442	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-5476.0	NM_001347240	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112707183-4	chr12	112706688	112707688	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14986.0	NM_001024602	217882.0	Mm.23689	NM_001024602	ENSMUSG00000072825	Cep170b	AI466840|AW555464|Kiaa0284|mKIAA0284	centrosomal protein 170B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103898804-4	chr14	103898287	103899287	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54311.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9277442-7	chr13	9276899	9277899	+	997.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	874.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-53483887-4	chr3	53483378	53484378	+	997.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4915.0	NM_153156	229277.0	Mm.222810	NM_153156	ENSMUSG00000027744	Stoml3	Epb7.2l|SLP3|sro	stomatin (Epb7.2)-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106134869-4	chr11	106134369	106135369	+	997.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 6 of 15)	intron (NM_011947, intron 6 of 15)	25058.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32330425-4	chr19	32329902	32330902	+	997.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 2 of 9)	intron (NM_144792, intron 2 of 9)	18914.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81551721-4	chr10	81551187	81552187	+	997.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6641.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17410430-4	chr16	17409913	17410913	+	997.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023348, intron 1 of 4)	intron (NM_023348, intron 1 of 4)	-4099.0	NM_001001983	224020.0	Mm.5718	NM_001001983	ENSMUSG00000041720	Pi4ka	Pik4ca	phosphatidylinositol 4-kinase alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108827103-4	chr9	108826606	108827606	+	997.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001359573, exon 1 of 36)	exon (NM_001359573, exon 1 of 36)	1061.0	NM_001359572	107934.0	Mm.39945	NM_080437	ENSMUSG00000023473	Celsr3	Adgrc3|Fmi1|flamingo|mKIAA0812	cadherin, EGF LAG seven-pass G-type receptor 3	protein-coding	1.5	0.0	0.0	1.5	0.0	0.0
Merged-chr7-55870488-4	chr7	55869955	55870955	+	997.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164661, intron 2 of 31)	B2_Mm2|SINE|B2	28384.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101725180-4	chr11	101724683	101725683	+	997.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7773.0	NM_144831	217207.0	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-69257760-4	chr10	69257251	69258251	+	997.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252637, intron 4 of 10)	intron (NM_001252637, intron 4 of 10)	44557.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129504479-3	chr2	129503973	129504973	+	997.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177653, intron 1 of 6)	RLTR18-int|LTR|ERVK	32129.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	15.0	14.0	3.5	2.0	13.5	13.5
Merged-chr8-11180052-3	chr8	11179561	11180561	+	997.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132744.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-66453552-4	chr18	66453029	66454029	+	997.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-5075.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8384087-2	chr12	8383586	8384586	+	997.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70653.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0.0	0.0	0.0	0.0	1.5	1.0
Merged-chr11-103171039-4	chr11	103170539	103171539	+	997.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077698)	promoter-TSS (NM_001077698)	-99.0	NM_001077698	57778.0	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96566324-4	chr15	96565830	96566830	+	997.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75632.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80101225-4	chr10	80100725	80101725	+	997.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359635)	promoter-TSS (NM_001359635)	-38.0	NM_001359635	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97673066-4	chr15	97672550	97673550	+	997.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32772.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32521561-4	chr9	32521053	32522053	+	997.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	L2b|LINE|L2	19899.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191557338-4	chr1	191556832	191557832	+	997.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305233, intron 9 of 15)	intron (NM_001305233, intron 9 of 15)	18212.0	NM_029766	76843.0	Mm.189102	NM_029766	ENSMUSG00000037474	Dtl	2810047L02Rik|5730564G15Rik|L2dtl|Ramp	denticleless E3 ubiquitin protein ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52838899-4	chr6	52838408	52839408	+	997.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 2 of 4)	intron (NM_173406, intron 2 of 4)	70712.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13518164-4	chr9	13517666	13518666	+	997.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86805.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	0.0	21.0	3.0	0.0	20.5	2.5
Merged-chr2-11212183-4	chr2	11211682	11212682	+	997.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	39800.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-63494712-3	chr15	63494209	63495209	+	997.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15101.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	1.5	7.5	6.5	10.0	13.0	7.5
Merged-chr14-114948985-3	chr14	114948452	114949452	+	997.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3004.0	NR_126548	74982.0		NR_126548	ENSMUSG00000115372	1700100I10Rik	1700085D13Rik|4930481K08Rik	RIKEN cDNA 1700100I10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161713161-3	chr1	161712675	161713675	+	997.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75320.0	NM_001205243	14103.0	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	0.0	1.0	0.5	0.0	0.0	0.5
Merged-chr6-50536687-4	chr6	50536195	50537195	+	997.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29779.0	NM_007808	13063.0	Mm.35389	NM_007808	ENSMUSG00000063694	Cycs	-	cytochrome c, somatic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-13426456-4	chr1	13426013	13427013	+	997.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52430.0	NM_008678	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119536765-4	chr4	119536273	119537273	+	997.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004178, intron 1 of 3)	intron (NM_001004178, intron 1 of 3)	1996.0	NM_001004178	433752.0	Mm.425205	NM_001004178	ENSMUSG00000087385	Frg2f1	AA415398	FSHD region gene 2 family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-99100674-4	chr13	99100157	99101157	+	997.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12736.0	NR_045495	69603.0	Mm.390632	NR_045495	ENSMUSG00000100410	2310020H05Rik	-	RIKEN cDNA 2310020H05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88491368-4	chr3	88490880	88491880	+	997.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002011, intron 1 of 11)	intron (NM_001002011, intron 1 of 11)	1932.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117724715-4	chr11	117724207	117725207	+	997.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 5 of 21)	intron (NM_198022, intron 5 of 21)	54941.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-58523065-4	chr10	58522549	58523549	+	997.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162956, intron 6 of 15)	L1Md_F2|LINE|L1	25112.0	NM_001162956	76138.0	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-70714467-4	chr6	70713969	70714969	+	997.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77706.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84811064-4	chr8	84810541	84811541	+	997.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10703.0	NM_001081982	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	4.0	0.0	0.0	0.0	2.5	0.0
Merged-chr9-70830334-4	chr9	70829849	70830849	+	997.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	104459.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78248614-4	chr15	78248124	78249124	+	997.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008677, intron 1 of 9)	intron (NM_008677, intron 1 of 9)	3813.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	14.5	37.0	30.5	9.0	24.0	26.5
Merged-chr12-112724224-4	chr12	112723713	112724713	+	997.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024602, intron 1 of 18)	MER45A|DNA|hAT-Tip100	2039.0	NM_001024602	217882.0	Mm.23689	NM_001024602	ENSMUSG00000072825	Cep170b	AI466840|AW555464|Kiaa0284|mKIAA0284	centrosomal protein 170B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182954855-2	chr1	182954355	182955355	+	997.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016928)	promoter-TSS (NM_016928)	67.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0.5	3.5	6.0	0.0	21.5	6.0
Merged-chr11-101470038-2	chr11	101469538	101470538	+	997.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009708, exon 3 of 5)	exon (NM_009708, exon 3 of 5)	1863.0	NM_009708	11858.0	Mm.378883	NM_009708	ENSMUSG00000001313	Rnd2	Arhn|Rohn|rho7	Rho family GTPase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-77897370-3	chr14	77896868	77897868	+	997.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-6871.0	NM_178825	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57763995-2	chr9	57763495	57764495	+	997.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007713, intron 1 of 12)	intron (NM_007713, intron 1 of 12)	1865.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96075612-4	chr10	96075116	96076116	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134953.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75733455-4	chr11	75732962	75733962	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009536, intron 1 of 5)	CpG	575.0	NM_009536	22627.0	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117120404-2	chr11	117119904	117120904	+	997.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 2 of 16)	intron (NM_001166507, intron 2 of 16)	5232.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80799946-2	chr15	80799446	80800446	+	997.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177124, intron 1 of 21)	intron (NM_177124, intron 1 of 21)	1336.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	2.5	11.0	8.5	2.5	13.0	8.0
Merged-chr12-80065258-4	chr12	80064756	80065756	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47757.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128714840-2	chr2	128714340	128715340	+	997.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	15925.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	26.5	84.5	73.5	44.5	80.0	70.0
Merged-chr10-59881007-2	chr10	59880507	59881507	+	997.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019965, intron 1 of 8)	intron (NM_019965, intron 1 of 8)	1416.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191955354-4	chr1	191954854	191955854	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22016.0	NM_001177900	74023.0	Mm.274393	NM_023727	ENSMUSG00000049353	Rd3	3322402L07Rik|rd-3|rd3	retinal degeneration 3	protein-coding	17.5	13.0	3.5	13.5	40.0	24.0
Merged-chr8-40512672-3	chr8	40512191	40513191	+	997.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011135)	promoter-TSS (NM_011135)	908.0	NM_033560	52348.0	Mm.489696	NM_033560	ENSMUSG00000031600	Vps37a	2210018P21Rik|4930592A21Rik|AW261445|D8Ertd531e	vacuolar protein sorting 37A	protein-coding	6.0	3.0	1.5	3.5	7.5	2.0
Merged-chr10-19102749-1	chr10	19102249	19103249	+	997.0	f1_c57bl6.idr	Intergenic	Intergenic	-39000.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	6.5	24.5	9.0	1.5	4.0	25.5
Merged-chr16-35047462-4	chr16	35046967	35047967	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023587, intron 2 of 6)	intron (NM_023587, intron 2 of 6)	25046.0	NM_023587	70757.0	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86442464-8	chr1	86441968	86442968	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	16139.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61029423-4	chr9	61028917	61029917	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12348.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21280667-4	chr14	21280169	21281169	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134079, intron 6 of 10)	intron (NM_134079, intron 6 of 10)	204517.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	4.0	0.0	3.0	0.0	0.0	0.0
Merged-chr10-120114238-2	chr10	120113738	120114738	+	997.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1273.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43526723-2	chr19	43526270	43527270	+	997.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-2165.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	0.0	3.5	1.0	0.0	5.5	0.0
Merged-chr15-78587475-4	chr15	78586969	78587969	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5880.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	7.5	28.5	31.5	19.0	32.5	28.5
Merged-chr2-165361084-2	chr2	165360583	165361583	+	997.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005425, intron 1 of 4)	MER20|DNA|hAT-Charlie	1036.0	NM_001005425	381405.0	Mm.296323	NM_001005425	ENSMUSG00000056824	Zfp663	Gm1008	zinc finger protein 663	protein-coding	0.0	0.0	0.0	0.0	1.5	0.0
Merged-chr16-76337785-2	chr16	76337285	76338285	+	997.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358238, intron 2 of 3)	intron (NM_001358238, intron 2 of 3)	35264.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120382485-2	chr11	120381985	120382985	+	997.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001195023, exon 17 of 17)	exon (NM_001195023, exon 17 of 17)	-3739.0	NM_027980	71885.0	Mm.274890	NM_027980	ENSMUSG00000025384	Faap100	2310003H01Rik	Fanconi anemia core complex associated protein 100	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87522722-2	chr3	87522090	87523090	+	997.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2988.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	1.0	12.0	8.5	1.0	9.5	9.5
Merged-chr10-93168196-4	chr10	93167702	93168702	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146239, intron 1 of 16)	intron (NM_146239, intron 1 of 16)	5417.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	53.0	144.5	71.5	56.5	104.5	69.5
Merged-chr15-38368098-2	chr15	38367598	38368598	+	997.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67387.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149586364-2	chr4	149585864	149586864	+	997.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290989)	promoter-TSS (NM_001290989)	-104.0	NM_001290989	65945.0	Mm.38993	NM_023051	ENSMUSG00000039953	Clstn1	1810034E21Rik|Cst-1|Cstn1	calsyntenin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-43966504-2	chr16	43966004	43967004	+	997.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12546.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	6.5	22.5	12.0	12.5	21.5	15.5
Merged-chr15-76817435-2	chr15	76816935	76817935	+	997.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	CpG	735.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44999303-2	chr13	44998803	44999803	+	997.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025772, intron 1 of 9)	intron (NM_025772, intron 1 of 9)	2793.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20128308-2	chr13	20127808	20128808	+	997.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	37801.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.0	7.5	11.5	4.0	14.0	10.0
Merged-chr3-149464298-2	chr3	149463798	149464798	+	997.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	189561.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-94879934-3	chr3	94879442	94880442	+	997.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172683, exon 19 of 19)	exon (NM_172683, exon 19 of 19)	7016.0	NM_008945	19172.0	Mm.368	NM_008945	ENSMUSG00000005779	Psmb4	Pros-27	proteasome (prosome, macropain) subunit, beta type 4	protein-coding	2.0	2.0	1.0	0.0	3.0	3.0
Merged-chr14-31182371-2	chr14	31181871	31182871	+	997.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347583)	TTS (NM_001347583)	-13730.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-33352158-4	chr5	33351658	33352658	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021500, intron 1 of 8)	ID_B1|SINE|B4	16586.0	NM_021500	59003.0	Mm.138617	NM_021500	ENSMUSG00000079562	Maea	1110030D19Rik|EMP|Gid9	macrophage erythroblast attacher	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114692195-2	chr5	114691695	114692695	+	997.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1260.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7063260-2	chr19	7062760	7063760	+	997.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134147, intron 1 of 10)	intron (NM_134147, intron 1 of 10)	6492.0	NM_134147	107227.0	Mm.439977	NM_134147	ENSMUSG00000036278	Macrod1	AI604841|AW743046|D930010J01Rik|Lrp16	MACRO domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84173618-2	chr12	84173118	84174118	+	997.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163502, exon 2 of 13)	exon (NM_001163502, exon 2 of 13)	20397.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5848887-2	chr17	5848387	5849387	+	997.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025664, intron 1 of 17)	intron (NM_025664, intron 1 of 17)	7507.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75653401-4	chr11	75652914	75653914	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080774, intron 1 of 31)	intron (NM_001080774, intron 1 of 31)	1264.0	NM_001080774	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	25.5	116.5	54.0	19.5	124.0	62.5
Merged-chr7-90036175-1	chr7	90035675	90036675	+	997.0	f1_balb.idr	intron (NR_110365, intron 1 of 5)	intron (NR_110365, intron 1 of 5)	7016.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	43.0	87.5	33.0	33.5	40.0	56.5
Merged-chr7-35086042-2	chr7	35085542	35086542	+	997.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-29476.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19318740-5	chr7	19318229	19319229	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-8684.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80729325-2	chr17	80728825	80729825	+	997.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1300.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5039887-1	chr19	5039387	5040387	+	997.0	f1_balb.idr	exon (NM_175383, exon 1 of 2)	exon (NM_175383, exon 1 of 2)	1061.0	NM_175383	108902.0	Mm.29628	NM_175383	ENSMUSG00000047379	B4gat1	1500032M01Rik|B3gnt1|B3gnt6|BETA3GNT1|iGAT|iGNT	beta-1,4-glucuronyltransferase 1	protein-coding	0.0	1.5	6.0	1.0	4.0	2.5
Merged-chr11-94374402-2	chr11	94373902	94374902	+	997.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 4 of 30)	intron (NM_029600, intron 4 of 30)	18574.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0.0	0.0	1.0	0.0	6.5	9.5
Merged-chr15-76770600-6	chr15	76770110	76771110	+	996.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	Lx7|LINE|L1	-46765.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	163.0	313.5	193.5	144.5	346.5	211.0
Merged-chr12-86950780-4	chr12	86950279	86951279	+	996.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173735, intron 1 of 3)	intron (NM_173735, intron 1 of 3)	3436.0	NM_001289432	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81481201-4	chr15	81480673	81481673	+	996.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14857.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78463569-4	chr9	78463077	78464077	+	996.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026658, intron 9 of 11)	intron (NM_026658, intron 9 of 11)	15367.0	NM_026658	68291.0	Mm.291779	NM_026658	ENSMUSG00000032342	Mto1	2310039H01Rik|5730419A02Rik	mitochondrial tRNA translation optimization 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153492059-4	chr1	153491567	153492567	+	996.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4407.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-79496166-4	chr7	79495670	79496670	+	996.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3856.0	NR_040311	101694.0	Mm.41661	NR_040311	ENSMUSG00000097023	Mir9-3hg	AI854517	Mir9-3 host gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-61001892-4	chr1	61001402	61002402	+	996.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23988.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	0.0	4.5	5.5	1.5	10.0	9.5
Merged-chr4-97777755-4	chr4	97777265	97778265	+	996.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001122953, exon 1 of 10)	5' UTR (NM_001122953, exon 1 of 10)	139.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100663403-4	chr7	100662870	100663870	+	996.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013746)	promoter-TSS (NM_013746)	-976.0	NM_001163182	27276.0	Mm.491216	NM_013746	ENSMUSG00000030701	Plekhb1	AI315628|PHR1|Phret1|evt-1	pleckstrin homology domain containing, family B (evectins) member 1	protein-coding	0.0	2.0	0.0	0.0	0.0	0.0
Merged-chr12-16878814-3	chr12	16878342	16879342	+	996.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16136.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	12.5	75.0	25.5	41.0	88.0	58.0
Merged-chr5-112950394-4	chr5	112949853	112950853	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 9 of 20)	intron (NM_001285806, intron 9 of 20)	-53991.0	NM_028901	74376.0	Mm.441903	NM_028901	ENSMUSG00000072720	Myo18b	4932408L24Rik|4933411E19Rik|Gm448	myosin XVIIIb	protein-coding	10.5	10.5	11.5	1.0	15.5	14.5
Merged-chr11-5098397-4	chr11	5097966	5098966	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290491)	promoter-TSS (NM_001290491)	622.0	NM_001283062	14030.0	Mm.142822	NM_007968	ENSMUSG00000009079	Ewsr1	Ews|Ewsh	Ewing sarcoma breakpoint region 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-79684241-4	chr1	79683752	79684752	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-12280.0	NM_183027	252903.0	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	5.0	17.5	0.5	3.0	12.5	16.5
Merged-chr8-25062136-4	chr8	25061641	25062641	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 5 of 11)	intron (NM_031257, intron 5 of 11)	-23179.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	22.5	46.0	66.5	31.0	55.5	64.0
Merged-chr1-107399533-4	chr1	107399020	107400020	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23169.0	NM_027548	116872.0	Mm.66015	NM_027548	ENSMUSG00000067001	Serpinb7	4631416M05Rik|megsin|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16891763-4	chr7	16891258	16892258	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010320)	promoter-TSS (NM_010320)	-28.0	NM_010320	14709.0	Mm.103770	NM_010320	ENSMUSG00000063594	Gng8	G(y)8	guanine nucleotide binding protein (G protein), gamma 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120914041-4	chr4	120913538	120914538	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	10967.0	NM_028457	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	0.5	11.5	9.5	1.5	11.0	2.5
Merged-chr1-152784365-4	chr1	152783870	152784870	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-15783.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69399499-4	chr8	69399013	69400013	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3969.0	NR_038043	378466.0	Mm.37846	NM_194351	ENSMUSG00000110444	Gm10033	9330175B10Rik|Gm10311	predicted gene 10033	ncRNA	45.0	88.0	72.0	43.5	110.5	111.5
Merged-chr11-113684546-4	chr11	113684036	113685036	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138598)	promoter-TSS (NM_138598)	102.0	NM_001361593	276852.0	Mm.239566	NM_177777	ENSMUSG00000041623	D11Wsu47e	-	DNA segment, Chr 11, Wayne State University 47, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-91139675-4	chr10	91139183	91140183	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15720.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-118071564-4	chr3	118071047	118072047	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-202611.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-82994274-6	chr6	82993692	82994692	+	996.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 4 of 9)	RSINE1|SINE|B4	39279.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	41.0	72.0	20.0	5.0	36.5	18.5
Merged-chr6-88901675-3	chr6	88901153	88902153	+	996.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011906)	promoter-TSS (NM_011906)	-598.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41563566-3	chr4	41563055	41564055	+	996.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027993, intron 1 of 5)	intron (NM_027993, intron 1 of 5)	5972.0	NM_001159583	71901.0	Mm.39215	NM_027993	ENSMUSG00000028439	Fam219a	2310028H24Rik	family with sequence similarity 219, member A	protein-coding	27.0	13.0	36.5	2.5	7.5	5.5
Merged-chr8-91176365-3	chr8	91175860	91176860	+	996.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40866.0	NM_010241	14339.0	Mm.324588	NM_010241	ENSMUSG00000031667	Aktip	AL023020|Fif|Ft|Ft1|Fts	thymoma viral proto-oncogene 1 interacting protein	protein-coding	3.5	12.0	5.5	0.0	0.0	4.0
Merged-chr1-152903784-3	chr1	152903302	152904302	+	996.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-603	-1156.0	NM_001005507	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116081978-4	chr3	116081514	116082514	+	996.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	47674.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143706879-4	chr7	143706372	143707372	+	996.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199227, intron 7 of 21)	intron (NM_001199227, intron 7 of 21)	-20997.0	NR_131763	79201.0	Mm.290780	NM_024290	ENSMUSG00000037613	Tnfrsf23	SOB|TNFRSFH23|Tnfrh1|Tnfrsf1al1|mDcTRAILR1|mSOB	tumor necrosis factor receptor superfamily, member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-10009589-4	chr3	10009093	10010093	+	996.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2992.0	NM_001272097	16592.0	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr10-25119256-4	chr10	25118753	25119753	+	996.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80917.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-67463824-4	chr3	67463312	67464312	+	996.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016753)	promoter-TSS (NM_016753)	95.0	NM_016753	17035.0	Mm.2632	NM_016753	ENSMUSG00000047557	Lxn	-	latexin	protein-coding	14.5	17.0	7.5	6.5	2.5	4.5
Merged-chr6-128437893-4	chr6	128437389	128438389	+	996.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028592)	promoter-TSS (NR_028592)	767.0	NM_010219	14228.0	Mm.12758	NM_010219	ENSMUSG00000030357	Fkbp4	AL022792|AW208983|FKBP-4|FKBP-52|FKBP52|FKPB52|p59	FK506 binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45893928-4	chr9	45893425	45894425	+	996.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178709, intron 5 of 13)	MTC|LTR|ERVL-MaLR	12257.0	NM_001361114	235315.0	Mm.220945	NM_178709	ENSMUSG00000042790	Rnf214	D130054N24Rik	ring finger protein 214	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84847684-4	chr12	84847202	84848202	+	996.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013589, intron 3 of 34)	intron (NM_013589, intron 3 of 34)	-28100.0	NR_028577	100303738.0	Mm.479389	NR_028577	ENSMUSG00000092130	D030025P21Rik	-	RIKEN cDNA D030025P21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11459966-2	chr8	11459466	11460466	+	996.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	B1_Mur2|SINE|Alu	-17963.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106392001-4	chr11	106391492	106392492	+	996.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9211.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148532232-4	chr2	148531740	148532740	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88705.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	41.5	29.5	26.0	41.0	36.0	26.5
Merged-chr19-4305230-2	chr19	4304730	4305730	+	996.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_130863, intron 1 of 21)	intron (NM_130863, intron 1 of 21)	992.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	15.0	65.5	40.0	10.0	36.5	13.5
Merged-chr17-46889721-6	chr17	46889227	46890227	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178385)	promoter-TSS (NM_178385)	-894.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73184064-4	chr15	73183569	73184569	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	878.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91305995-4	chr12	91305506	91306506	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181815, intron 10 of 25)	intron (NM_181815, intron 10 of 25)	78403.0	NM_181815	75216.0	Mm.312204	NM_181815	ENSMUSG00000061533	Cep128	4930534B04Rik|5430424K18Rik|AI449708|AI480494|E230024F20	centrosomal protein 128	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88395923-4	chr4	88395425	88396425	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081184, intron 37 of 43)	intron (NM_001081184, intron 37 of 43)	43001.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	0.0	8.0	0.0	11.5	0.0	4.0
Merged-chr11-69012516-4	chr11	69012000	69013000	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR34C_MM|LTR|ERVK	-3411.0	NM_001281465	68964.0	Mm.285785	NM_001013256	ENSMUSG00000020898	Ctc1	1500010J02Rik|AAF-132|AAF132	CTS telomere maintenance complex component 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108049986-2	chr9	108049486	108050486	+	996.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_177910, intron 3 of 8)	intron (NM_177910, intron 3 of 8)	722.0	NM_001357682	331026.0	Mm.22554	NM_177910	ENSMUSG00000070284	Gmppb	AI317178|E430010H19	GDP-mannose pyrophosphorylase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102046178-4	chr5	102045673	102046673	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	23748.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120742232-2	chr8	120741732	120742732	+	996.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301811, intron 2 of 8)	intron (NM_001301811, intron 2 of 8)	3593.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-65230751-4	chr1	65230243	65231243	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310624, intron 12 of 41)	intron (NM_001310624, intron 12 of 41)	44058.0	NM_011086	18711.0	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE type zinc finger containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-144307206-4	chr1	144306709	144307709	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58105.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111156610-3	chr10	111156107	111157107	+	996.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8195.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80445854-6	chr17	80445310	80446310	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009231, intron 6 of 21)	intron (NM_009231, intron 6 of 21)	34643.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-76175234-4	chr5	76174735	76175735	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB3_1-I_MM-int|LTR|ERVK	-8645.0	NM_011626	21982.0	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109025748-4	chr3	109025251	109026251	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163567, intron 1 of 10)	intron (NM_001163567, intron 1 of 10)	1856.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	2.0	13.5	2.0	1.0	4.0	3.5
Merged-chr12-76923316-2	chr12	76922816	76923816	+	996.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38932.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167939707-4	chr2	167939228	167940228	+	996.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	7401.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64377960-4	chr1	64377461	64378461	+	996.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-154843.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16207238-3	chr7	16206652	16207652	+	996.7999880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027883, intron 7 of 16)	intron (NM_027883, intron 7 of 16)	14841.0	NM_001285931	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	169.0	294.0	261.5	11.5	45.0	31.0
Merged-chr4-126102554-4	chr4	126102077	126103077	+	996.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1380.0	NM_028800	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	105.0	234.5	190.5	116.5	326.5	227.0
Merged-chr7-25726158-4	chr7	25725683	25726683	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001360789, exon 12 of 15)	exon (NM_001360789, exon 12 of 15)	-7130.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58588863-4	chr9	58588366	58589366	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151824, intron 1 of 7)	intron (NR_151824, intron 1 of 7)	6626.0	NM_001357751	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-101596344-4	chr3	101595858	101596858	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	8349.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	20.0	36.5	25.5	13.5	16.5	12.5
Merged-chr3-60508189-4	chr3	60507692	60508692	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	MIR|SINE|MIR	7013.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	35.5	31.0	34.0	9.5	28.5	7.0
Merged-chr18-54992600-4	chr18	54992091	54993091	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360787)	promoter-TSS (NM_001360787)	0.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-107271028-4	chr8	107270515	107271515	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).3	intron (NR_039557, intron 2 of 3).3	14851.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120572322-4	chr2	120571816	120572816	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009222, intron 1 of 7)	T-rich|Low_complexity|Low_complexity	4645.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	19.5	29.5	32.5	19.5	29.5	33.5
Merged-chr11-76479312-4	chr11	76478780	76479780	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 2 of 21)	intron (NM_001346670, intron 2 of 21)	-10815.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	135.5	312.0	292.5	148.0	375.0	263.5
Merged-chr1-75234826-4	chr1	75234331	75235331	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1592.0	NM_001159884	56812.0	Mm.489660	NM_020266	ENSMUSG00000026203	Dnajb2	2700059H22Rik|Dnajb10|Hsj1|mDj8	DnaJ heat shock protein family (Hsp40) member B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89242650-4	chr3	89242160	89243160	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_121683, intron 3 of 10)	intron (NR_121683, intron 3 of 10)	2353.0	NR_121683	360213.0	Mm.331156	NM_183037	ENSMUSG00000042766	Trim46	TRIFIC	tripartite motif-containing 46	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-72917614-4	chr15	72917106	72918106	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029640, intron 15 of 21)	intron (NM_029640, intron 15 of 21)	-107282.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75991048-4	chr2	75990539	75991539	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081033)	TTS (NM_001081033)	-9072.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113119684-4	chr12	113119178	113120178	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054081, intron 3 of 19)	intron (NM_054081, intron 3 of 19)	-20558.0	NM_024223	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128766979-4	chr6	128766489	128767489	+	996.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	21652.0	NM_001159904	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	0.0	0.0	2.5	0.5	10.0	1.0
Merged-chr1-51494069-4	chr1	51493570	51494570	+	996.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15671.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20645345-4	chr9	20644819	20645819	+	996.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286530)	promoter-TSS (NM_001286530)	516.0	NR_153859	66177.0	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-92438136-4	chr2	92437653	92438653	+	996.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4084.0	NM_009963	12953.0	Mm.254181	NM_009963	ENSMUSG00000068742	Cry2	AV006279|D130054K12Rik	cryptochrome 2 (photolyase-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53770313-4	chr18	53769827	53770827	+	996.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25780.0	NM_178686	225523.0	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144267851-4	chr2	144267344	144268344	+	996.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024225, intron 1 of 12)	intron (NM_024225, intron 1 of 12)	-1642.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115712590-4	chr11	115712118	115713118	+	996.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4021.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	7.5	18.0	15.5	4.0	22.0	9.5
Merged-chr12-71016613-4	chr12	71016098	71017098	+	996.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045055)	promoter-TSS (NR_045055)	631.0	NM_001081195	238247.0	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	18.0	56.5	60.0	52.0	48.0	38.0
Merged-chr3-96559605-4	chr3	96559087	96560087	+	996.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009935, intron 4 of 7)	intron (NM_001009935, intron 4 of 7)	1630.0	NM_001009935	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	21.5	39.0	18.0	10.5	19.0	13.5
Merged-chr4-21688797-2	chr4	21688297	21689297	+	996.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2834.0	NM_001080771	230025.0	Mm.208541	NM_001080771	ENSMUSG00000040478	Prdm13	-	PR domain containing 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92448443-2	chr5	92447943	92448943	+	996.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 10 of 11)	intron (NM_007644, intron 10 of 11)	-10114.0	NR_105843	102466159.0		NR_105843	ENSMUSG00000099160	Mir6415	Gm27714|mmu-mir-6415	microRNA 6415	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137995553-4	chr4	137995062	137996062	+	996.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256195, intron 2 of 34)	intron (NM_001256195, intron 2 of 34)	2106.0	NM_172703	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	91.0	181.5	138.5	150.0	326.5	168.0
Merged-chr3-61404328-4	chr3	61403818	61404818	+	996.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	39811.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131260539-2	chr1	131260039	131261039	+	996.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_019777, intron 16 of 21)	intron (NM_019777, intron 16 of 21)	-15361.0	NM_018750	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50233994-2	chr11	50233494	50234494	+	996.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_145926, intron 11 of 14)	intron (NM_145926, intron 11 of 14)	1749.0	NR_105884	102466765.0		NR_105884	ENSMUSG00000098474	Mir6919	Gm27889|mmu-mir-6919	microRNA 6919	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191270369-4	chr1	191269873	191270873	+	996.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	45919.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95703417-3	chr16	95702938	95703938	+	996.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011809, intron 1 of 9)	intron (NM_011809, intron 1 of 9)	1031.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-26675931-3	chr14	26675428	26676428	+	996.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6082.0	NM_178668	211948.0	Mm.290758	NM_178668	ENSMUSG00000043702	Pde12	2'-PDE|E430028B21Rik	phosphodiesterase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-70297010-4	chr10	70296531	70297531	+	996.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51755.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-148961098-4	chr3	148960588	148961588	+	996.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6453.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	15.5	2.5	11.5	19.0	42.0	38.0
Merged-chr2-180115876-4	chr2	180115373	180116373	+	996.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3493.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64382604-4	chr5	64382091	64383091	+	996.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85351.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-181211539-4	chr1	181210937	181211937	+	996.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145514, exon 1 of 14)	exon (NM_145514, exon 1 of 14)	541.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-17278579-4	chr19	17278097	17279097	+	996.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60908.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	22.5	24.5	8.0	7.5	15.5	11.0
Merged-chr6-29216549-7	chr6	29216066	29217066	+	996.6785890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302933)	promoter-TSS (NM_001302933)	-202.0	NM_001302934	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	10.0	27.5	31.5	15.0	56.0	21.5
Merged-chr18-70531031-4	chr18	70530546	70531546	+	996.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136090)	promoter-TSS (NM_001136090)	-725.0	NM_001289515	26447.0	Mm.244352	NM_011972	ENSMUSG00000038425	Poli	Rad30b	polymerase (DNA directed), iota	protein-coding	176.5	517.5	416.0	171.0	523.5	343.5
Merged-chr9-89253597-4	chr9	89253097	89254097	+	996.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	42213.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	4.0	12.5	6.5	12.0	0.0	10.0
Merged-chr1-85276705-1	chr1	85276205	85277205	+	996.6666869999999	f1_balb.idr	Intergenic	RSINE1|SINE|B4	-6139.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68136670-4	chr10	68136164	68137164	+	996.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 4 of 9)	intron (NM_023598, intron 4 of 9)	142062.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	43.5	106.0	75.5	53.0	107.5	81.5
Merged-chr4-128883571-4	chr4	128883075	128884075	+	996.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178110)	promoter-TSS (NM_178110)	-565.0	NM_178110	67525.0	Mm.30653	NM_178110	ENSMUSG00000041000	Trim62	6330414G21Rik|AI450348|Dear1	tripartite motif-containing 62	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-43479164-4	chr10	43478693	43479693	+	996.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199028)	promoter-TSS (NM_199028)	53.0	NM_199028	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166469181-4	chr2	166468687	166469687	+	996.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57D|LTR|ERV1	21736.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98683076-2	chr11	98682576	98683576	+	996.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009439, intron 1 of 11)	intron (NM_009439, intron 1 of 11)	522.0	NM_009439	22123.0	Mm.12194	NM_009439	ENSMUSG00000017221	Psmd3	AI255837|AntP91a|D11Bwg1349e|Psd3|Tstap91a	proteasome (prosome, macropain) 26S subunit, non-ATPase, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43515003-2	chr13	43514503	43515503	+	996.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-34030.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-47211295-2	chr13	47210795	47211795	+	996.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 2 of 7)	intron (NM_146042, intron 2 of 7)	17292.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	6.5	2.5	2.0	3.0	3.0	9.5
Merged-chr19-12006202-6	chr19	12005677	12006677	+	996.638916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30563.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-97345933-4	chr5	97345426	97346426	+	996.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46404.0	NM_001033191	97243.0	Mm.11746	NM_001033191	ENSMUSG00000046000	Naa11	Ard1b|Ard2|C80008	N(alpha)-acetyltransferase 11, NatA catalytic subunit	protein-coding	11.5	12.5	11.5	10.5	15.5	9.0
Merged-chr17-42457684-4	chr17	42457188	42458188	+	996.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355270, intron 2 of 2)	MTC|LTR|ERVL-MaLR	141088.0	NM_001355270	627626.0	Mm.390999	NM_028474	ENSMUSG00000042256	Ptchd4	3110082D06Rik|Gm321	patched domain containing 4	protein-coding	0.0	3.5	1.5	1.5	2.5	0.5
Merged-chr11-23696063-4	chr11	23695554	23696554	+	996.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033654, intron 4 of 17)	intron (NM_001033654, intron 4 of 17)	30078.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83989444-4	chr8	83988950	83989950	+	996.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008854, intron 5 of 9)	intron (NM_008854, intron 5 of 9)	-8222.0	NM_001081415	666704.0	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	34.5	56.5	41.0	25.5	62.5	38.5
Merged-chr6-48699126-4	chr6	48698650	48699650	+	996.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9094.0	NM_153175	231931.0	Mm.321047	NM_153175	ENSMUSG00000047867	Gimap6	4833419H03Rik|Ian6|mFLJ00102	GTPase, IMAP family member 6	protein-coding	10.5	7.0	2.0	3.0	8.5	5.5
Merged-chr1-120969701-4	chr1	120969207	120970207	+	996.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117698.0	NR_038008	98452.0	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97445309-4	chr6	97444766	97445766	+	996.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	14020.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34340670-4	chr6	34340156	34341156	+	996.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13490.0	NM_008012	14187.0	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69041793-4	chr11	69041293	69042293	+	996.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3844.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5702510-4	chr2	5702024	5703024	+	996.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	GA-rich|Low_complexity|Low_complexity	12238.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-86129994-4	chr5	86129523	86130523	+	996.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172712, intron 23 of 32)	intron (NM_172712, intron 23 of 32)	42720.0	NM_172712	231380.0	Mm.34012	NM_172712	ENSMUSG00000035898	Uba6	4930542H01|5730469D23Rik|AU021846|AW124799|E1-L2|Ube1l2	ubiquitin-like modifier activating enzyme 6	protein-coding	5.0	12.0	12.5	3.5	29.5	15.0
Merged-chr3-126771751-4	chr3	126771241	126772241	+	996.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 6 of 18)	intron (NM_001025438, intron 6 of 18)	171645.0	NM_001034168	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	7.5	9.5	3.5	0.0	5.0	2.0
Merged-chr5-123061511-4	chr5	123060929	123061929	+	996.590942	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-14413.0	NM_001347456	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	0.0	4.5	2.0	0.0	5.0	2.0
Merged-chr6-87247495-2	chr6	87246995	87247995	+	996.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_054041, intron 10 of 17)	intron (NM_054041, intron 10 of 17)	88280.0	NM_054041	69538.0	Mm.232525	NM_054041	ENSMUSG00000033420	Antxr1	2310008J16Rik|2810405N18Rik|Antrx1|Tem8	anthrax toxin receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-21955866-4	chr3	21955376	21956376	+	996.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120776.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76399134-4	chr11	76398646	76399646	+	996.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008750)	promoter-TSS (NM_008750)	-5.0	NM_008750	18230.0	Mm.27915	NM_008750	ENSMUSG00000020844	Nxn	l11Jus13	nucleoredoxin	protein-coding	0.0	0.0	1.5	0.0	1.0	0.0
Merged-chr15-41685753-4	chr15	41685234	41686234	+	996.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 3 of 17)	intron (NR_152565, intron 3 of 17)	-103261.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11115395-4	chr8	11114901	11115901	+	996.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106971.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3358953-4	chr5	3358457	3359457	+	996.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	15064.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90303357-4	chr9	90302846	90303846	+	996.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-32577.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141142591-7	chr4	141142082	141143082	+	996.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2786.0	NR_102343	213491.0	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128322456-4	chr10	128321978	128322978	+	996.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019953)	promoter-TSS (NM_019953)	19.0	NM_019953	56530.0	Mm.44220	NM_019953	ENSMUSG00000025381	Cnpy2	5330432A10Rik|AW229003|D10Bwg1546e|Tmem4|Zsig9	canopy FGF signaling regulator 2	protein-coding	2.5	1.5	4.5	1.0	13.5	13.0
Merged-chr17-6142211-3	chr17	6141728	6142728	+	996.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054040, intron 1 of 13)	intron (NM_054040, intron 1 of 13)	4080.0	NM_054040	68842.0	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	1.0	7.0	0.0	1.0	7.5	1.5
Merged-chr17-26498443-3	chr17	26497918	26498918	+	996.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	10054.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	12.0	47.0	18.5	14.0	43.0	19.0
Merged-chr13-109736914-3	chr13	109736411	109737411	+	996.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-166898.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.0	4.0	5.0	0.0	9.5	1.0
Merged-chr1-86344521-4	chr1	86344022	86345022	+	996.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010880)	TTS (NM_010880)	6763.0	NR_028478	100303740.0	Mm.154378	NR_028478	ENSMUSG00000064837	Snora75	MBI-55	small nucleolar RNA, H/ACA box 75	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95055118-4	chr8	95054636	95055636	+	996.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042715)	promoter-TSS (NM_001042715)	33.0	NM_001042715	330830.0	Mm.277112	NM_001042715	ENSMUSG00000031786	Drc7	Ccdc135|Gm770|SRG-L|SRG-S	dynein regulatory complex subunit 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11391101-4	chr2	11390611	11391611	+	996.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040615, intron 1 of 2)	intron (NR_040615, intron 1 of 2)	7389.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11426884-4	chr2	11426378	11427378	+	996.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-28378.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79958323-4	chr10	79957826	79958826	+	996.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-1826.0	NM_175450	216156.0	Mm.35828	NM_175450	ENSMUSG00000035754	Wdr18	2310012I10Rik|AU044733|AW122032	WD repeat domain 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-35097066-4	chr4	35096556	35097556	+	996.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-54999.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10370708-7	chr17	10370192	10371192	+	996.517883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46090.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-22308342-4	chr10	22307852	22308852	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015465, intron 2 of 2)	intron (NR_015465, intron 2 of 2)	1632.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-31108905-2	chr7	31108405	31109405	+	996.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110252, intron 5 of 13)	intron (NM_001110252, intron 5 of 13)	2092.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	0.0	3.0	0.5	0.0	3.0	1.5
Merged-chr17-47249073-2	chr17	47248573	47249573	+	996.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 4 of 19)	intron (NM_001097623, intron 4 of 19)	18843.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	7.0	2.5	1.5	8.5	8.5	8.0
Merged-chr4-153974599-2	chr4	153974099	153975099	+	996.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177673)	promoter-TSS (NM_177673)	482.0	NM_007859	13368.0	Mm.388918	NM_007859	ENSMUSG00000029027	Dffb	40kDa|5730477D02Rik|CAD|CPAN|DFF40|Didff	DNA fragmentation factor, beta subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35086782-4	chr7	35086271	35087271	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30205.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75786400-2	chr15	75785900	75786900	+	996.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172121, intron 4 of 11)	intron (NM_172121, intron 4 of 11)	-38478.0	NM_194350	378435.0	Mm.309589	NM_194350	ENSMUSG00000047591	Mafa	RIPE3b1	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31090666-2	chr17	31090166	31091166	+	996.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	32972.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4436333-2	chr12	4435833	4436833	+	996.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010881, intron 1 of 22)	L1M2|LINE|L1	40849.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41968371-4	chr10	41967860	41968860	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 8 of 17)	intron (NM_001034858, intron 8 of 17)	50022.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85477938-4	chr12	85477446	85478446	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010234)	TTS (NM_010234)	4056.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-53692798-2	chr16	53692298	53693298	+	996.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-877054.0	NR_040495	73820.0	Mm.60493	NR_040495		4930404A05Rik	-	RIKEN cDNA 4930404A05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-154093553-4	chr1	154093069	154094069	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107618.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31256869-2	chr15	31256369	31257369	+	996.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146057, intron 2 of 3)	intron (NM_146057, intron 2 of 3)	32484.0	NM_146057	223453.0	Mm.222867	NM_146057	ENSMUSG00000039168	Dap	4921531N22Rik|AI789753|AU040360	death-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132898274-2	chr7	132897774	132898774	+	996.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-32868.0	NM_207302	360216.0	Mm.389984	NM_207302	ENSMUSG00000030967	Zranb1	9330160G10Rik|D7Wsu87e|Gm1956|Trabid	zinc finger, RAN-binding domain containing 1	protein-coding	0.0	2.5	1.0	0.0	0.0	0.0
Merged-chr7-141464009-3	chr7	141463515	141464515	+	996.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152220)	promoter-TSS (NR_152220)	-111.0	NR_152220	100126795.0	Mm.386851	NR_152219	ENSMUSG00000073787	Gm10575	-	predicted gene 10575	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-33244608-2	chr4	33244108	33245108	+	996.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033225)	TTS (NM_001033225)	4179.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-104939899-2	chr12	104939399	104940399	+	996.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042699, intron 17 of 18)	intron (NM_001042699, intron 17 of 18)	58778.0	NM_001042699	212073.0	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	KASH3|nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88212816-2	chr1	88212316	88213316	+	996.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_201645, exon 1 of 5)	exon (NM_201645, exon 1 of 5)	857.0	NM_201645	394436.0	Mm.300095	NM_201645	ENSMUSG00000089960	Ugt1a1	Gnt1|UDPGT 1-1|UGT1A01|Udpgt-1a|UgtBr1	UDP glucuronosyltransferase 1 family, polypeptide A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102621783-2	chr14	102621283	102622283	+	996.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	360849.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126489934-4	chr4	126489407	126490407	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153177, exon 18 of 18)	3' UTR (NM_153177, exon 18 of 18)	-21324.0	NM_153403	236511.0	Mm.30800	NM_153403	ENSMUSG00000041530	Ago1	Eif2c1	argonaute RISC catalytic subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156181518-4	chr2	156181027	156182027	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-1289.0	NM_133242	170791.0	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding	82.0	133.5	121.5	81.5	191.5	119.0
Merged-chr17-83212646-4	chr17	83212138	83213138	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2645.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71136042-2	chr17	71135542	71136542	+	996.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47490.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59161700-6	chr2	59161139	59162139	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001178)	promoter-TSS (NM_001001178)	789.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27466534-4	chr15	27466013	27467013	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020332)	promoter-TSS (NM_020332)	-164.0	NM_020332	11732.0	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96981724-2	chr11	96981224	96982224	+	996.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4036.0	NM_001080964	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63050980-4	chr14	63050473	63051473	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3982.0	NM_001034910	619548.0	Mm.387101	NM_001034910	ENSMUSG00000054763	Defb42	BD-42|Defb44|mBD-42	defensin beta 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-16112658-4	chr4	16112147	16113147	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50996.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120203974-4	chr7	120203480	120204480	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026458)	promoter-TSS (NM_026458)	16.0	NM_026458	67928.0	Mm.158178	NM_026458	ENSMUSG00000062017	Abca14	1700110B15Rik|4930539G24Rik	ATP-binding cassette, sub-family A (ABC1), member 14	protein-coding	0.5	0.0	4.0	2.0	8.5	3.0
Merged-chr2-45108845-4	chr2	45108337	45109337	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	1440.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80597757-2	chr17	80597257	80598257	+	996.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360278, intron 28 of 33)	intron (NM_001360278, intron 28 of 33)	-19944.0	NM_001360144	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90880647-2	chr5	90880147	90881147	+	996.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10598.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0.0	1.0	0.0	0.5	1.0	0.0
Merged-chr12-79885467-4	chr12	79884950	79885950	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	39283.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72881377-2	chr5	72880877	72881877	+	996.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12929.0	NM_001113460	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115059143-4	chr5	115058639	115059639	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029012, intron 1 of 10)	intron (NM_029012, intron 1 of 10)	47615.0	NM_029012	74585.0	Mm.355894	NM_029012	ENSMUSG00000029550	Sppl3	4833416I09Rik|Psl4|Usmg3	signal peptide peptidase 3	protein-coding	6.0	16.5	13.5	5.5	35.0	34.5
Merged-chr11-69692366-4	chr11	69691872	69692872	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011614, intron 5 of 6)	L2|LINE|L2	3726.0	NM_011614	21944.0	Mm.8983	NM_011614	ENSMUSG00000097328	Tnfsf12	Apo3l|Dr3l|Dr3lg|Tweak	tumor necrosis factor (ligand) superfamily, member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-48878130-2	chr7	48877630	48878630	+	996.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013368, intron 3 of 12)	intron (NM_001013368, intron 3 of 12)	2911.0	NM_001013368	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36104854-2	chr1	36104354	36105354	+	996.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_015818, exon 2 of 2)	3' UTR (NM_015818, exon 2 of 2)	36454.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127297996-2	chr7	127297496	127298496	+	996.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253873, intron 2 of 30)	intron (NM_001253873, intron 2 of 30)	1736.0	NM_001253874	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-84830165-2	chr11	84829665	84830665	+	996.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_046281, intron 2 of 2)	B2_Mm2|SINE|B2	987.0	NR_046281	74995.0	Mm.84413	NR_046281	ENSMUSG00000086799	4930502E09Rik	-	RIKEN cDNA 4930502E09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81126675-2	chr10	81126175	81127175	+	996.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-9596.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81729551-2	chr15	81729051	81730051	+	996.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011241, intron 1 of 16)	CpG	368.0	NM_011241	19387.0	Mm.270975	NM_011241	ENSMUSG00000022391	Rangap1	C79654|Fug1|mKIAA1835	RAN GTPase activating protein 1	protein-coding	4.0	11.5	8.0	4.0	9.5	10.0
Merged-chr2-11426505-2	chr2	11426005	11427005	+	996.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-28005.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50110759-3	chr6	50110256	50111256	+	996.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361247)	promoter-TSS (NM_001361247)	-104.0	NM_001361247	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	6.5	12.0	21.0	6.5	9.0	21.0
Merged-chr12-104066464-4	chr12	104065942	104066942	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-11517.0	NR_002861	321018.0	Mm.297023	NR_002861		Serpina4-ps1	KALps|Klst	serine (or cysteine) peptidase inhibitor, clade A, member 4, pseudogene 1	pseudo	2.0	1.5	0.0	4.5	3.0	0.0
Merged-chr5-103389605-4	chr5	103389096	103390096	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35596.0	NM_011204	19249.0	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27183871-5	chr3	27183335	27184335	+	996.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	831.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4521655-4	chr8	4521166	4522166	+	996.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026058, intron 9 of 10)	intron (NM_026058, intron 9 of 10)	28261.0	NM_026058	67260.0	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-27175725-4	chr8	27175228	27176228	+	996.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1082.0	NM_001080813	75767.0	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83655870-4	chr11	83655385	83656385	+	996.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6507.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-46894616-4	chr1	46894106	46895106	+	996.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356417, intron 1 of 10)	ORR1D2|LTR|ERVL-MaLR	31170.0	NM_001356417	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44745339-4	chr7	44744840	44745840	+	996.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289839, intron 1 of 4)	intron (NM_001289839, intron 1 of 4)	3009.0	NM_001289836	243963.0	Mm.382935	NM_178734	ENSMUSG00000048012	Zfp473	D030014N22Rik|Znf473|zfp-100	zinc finger protein 473	protein-coding	3.5	0.0	2.5	3.5	4.0	2.5
Merged-chr10-18965082-4	chr10	18964587	18965587	+	996.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46876.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106561046-4	chr11	106560558	106561558	+	996.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198292, intron 2 of 11)	intron (NM_198292, intron 2 of 11)	51872.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137817657-4	chr5	137817150	137818150	+	996.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360023, intron 13 of 16)	intron (NM_001360023, intron 13 of 16)	18628.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124001107-4	chr5	124000601	124001601	+	996.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145070, intron 27 of 31)	intron (NM_145070, intron 27 of 31)	4249.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-97839681-4	chr4	97839231	97840231	+	996.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	62105.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-39636216-3	chr8	39635722	39636722	+	996.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113326, intron 1 of 9)	intron (NM_001113326, intron 1 of 9)	6456.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	12.0	29.0	41.0	4.0	29.0	12.5
Merged-chr4-71126828-3	chr4	71126301	71127301	+	996.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-591873.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105499591-3	chr5	105499092	105500092	+	996.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-19879.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142388794-3	chr7	142388284	142389284	+	996.444458	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009983)	promoter-TSS (NM_009983)	-914.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	44.5	28.0	23.0	9.5	30.0	19.0
Merged-chr13-62785807-7	chr13	62785298	62786298	+	996.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256065)	promoter-TSS (NM_001256065)	10.0	NM_001256065	380850.0	Mm.439823	NM_001256065	ENSMUSG00000091183	Gm5141	-	predicted gene 5141	protein-coding	1.0	4.0	6.0	3.5	0.0	2.5
Merged-chr3-27611348-4	chr3	27610849	27611849	+	996.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 4 of 26)	intron (NM_001356953, intron 4 of 26)	-26354.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-21841074-4	chr3	21840578	21841578	+	996.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-235574.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51163580-4	chr14	51163079	51164079	+	996.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019398)	TTS (NM_019398)	1319.0	NM_019398	54159.0	Mm.377125	NM_019398	ENSMUSG00000059606	Rnase2b	Ear5|Raf4|mR5	ribonuclease, RNase A family, 2B (liver, eosinophil-derived neurotoxin)	protein-coding	5.5	14.5	10.5	7.0	13.0	8.5
Merged-chr18-62172902-4	chr18	62172402	62173402	+	996.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7079.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63436493-4	chr14	63435983	63436983	+	996.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177628)	promoter-TSS (NM_177628)	89.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	51.5	122.0	89.5	47.5	119.5	85.5
Merged-chr11-117775729-4	chr11	117775239	117776239	+	996.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_154387, exon 6 of 19)	non-coding (NR_154387, exon 6 of 19)	3909.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91053929-4	chr1	91053421	91054421	+	996.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	477.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54879587-4	chr11	54879081	54880081	+	996.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13198.0	NM_008248	15254.0	Mm.425	NM_008248	ENSMUSG00000020267	Hint1	AA673479|Hint|Ipk1|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70136600-4	chr12	70136096	70137096	+	996.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17575.0	NM_001195033	100504285.0	Mm.291105	NM_001195033	ENSMUSG00000090121	Abhd12b	Gm804	abhydrolase domain containing 12B	protein-coding	6.0	18.5	25.0	11.5	22.0	23.5
Merged-chr18-34930466-4	chr18	34929984	34930984	+	996.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144866, intron 2 of 10)	intron (NM_144866, intron 2 of 10)	1519.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91008960-3	chr12	91008462	91009462	+	996.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181815, intron 24 of 25)	intron (NM_181815, intron 24 of 25)	-36886.0	NR_045858	71349.0	Mm.442093	NR_045858	ENSMUSG00000085004	5430427M07Rik	-	RIKEN cDNA 5430427M07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40606027-3	chr12	40605461	40606461	+	996.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	159908.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50838659-3	chr14	50838147	50839147	+	996.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009351, intron 34 of 54)	intron (NM_009351, intron 34 of 54)	30731.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	86.5	254.0	148.0	72.5	154.0	143.5
Merged-chr10-117843121-2	chr10	117842641	117843641	+	996.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	B1_Mus1|SINE|Alu	2833.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	20.0	45.5	27.5	16.5	61.5	29.5
Merged-chr10-49075626-4	chr10	49075116	49076116	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	712321.0	NM_001358866	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	0.0	13.0	10.5	15.0	30.5	13.5
Merged-chr10-68091976-4	chr10	68091488	68092488	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112418.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	12.0	33.5	11.5	9.0	35.5	16.5
Merged-chr18-34538349-4	chr18	34537844	34538844	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3984.0	NM_009290	20890.0	Mm.558	NM_009290	ENSMUSG00000012282	Wnt8a	Stra11|Wnt-8A|Wnt-8D|Wnt8d	wingless-type MMTV integration site family, member 8A	protein-coding	0.5	0.0	2.0	0.0	0.0	2.0
Merged-chr5-43854318-4	chr5	43853801	43854801	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14508.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147758273-4	chr5	147757762	147758762	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32274.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	8.5	6.0	12.0	1.5	20.5	4.5
Merged-chr1-6406586-4	chr1	6406078	6407078	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47247.0	NM_001195732	620393.0	Mm.388992	NM_001195732	ENSMUSG00000087247	Alkal1	EG620393|Fam150a	ALK and LTK ligand 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100511831-4	chr7	100511327	100512327	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153527, exon 2 of 8)	exon (NM_153527, exon 2 of 8)	2988.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	41.5	70.5	73.5	4.0	11.5	28.0
Merged-chr10-17408045-4	chr10	17407543	17408543	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-312261.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0.0	2.5	0.0	0.0	0.0	0.0
Merged-chr18-50058711-4	chr18	50058213	50059213	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134131, intron 1 of 1)	intron (NM_134131, intron 1 of 1)	-5051.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	37.0	12.0	44.0	23.5	30.5	21.5
Merged-chr14-30190580-4	chr14	30190087	30191087	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 4 of 46)	L1VL4|LINE|L1	162899.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	19.5	54.0	39.0	16.0	25.5	36.0
Merged-chr5-135677418-4	chr5	135676888	135677888	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-11757.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	5.0	0.5	0.0	1.5	6.0	2.5
Merged-chr10-21622272-4	chr10	21621772	21622772	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027968, exon 3 of 3)	non-coding (NR_027968, exon 3 of 3)	29127.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32230779-4	chr12	32230278	32231278	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22129.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	6.0	12.0	3.5	2.0	4.5	8.5
Merged-chr1-151343718-4	chr1	151343236	151344236	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359262)	promoter-TSS (NM_001359262)	-750.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122548042-4	chr8	122547579	122548579	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037298, intron 1 of 50)	intron (NM_001037298, intron 1 of 50)	3250.0	NM_001037298	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	3.5	38.0	11.5	1.0	14.5	9.0
Merged-chr15-39943144-6	chr15	39942624	39943624	+	996.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172814, intron 1 of 6)	intron (NM_172814, intron 1 of 6)	870.0	NM_001347036	239393.0	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80075051-4	chr7	80074704	80075704	+	996.357178	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045695)	promoter-TSS (NR_045695)	53.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	41.5	91.5	57.5	32.0	52.5	48.5
Merged-chr4-136146168-8	chr4	136145639	136146639	+	996.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008321)	TTS (NM_008321)	2317.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	33.5	73.5	69.0	15.0	100.5	42.5
Merged-chr17-24735308-2	chr17	24734765	24735765	+	996.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025425, intron 4 of 6)	intron (NM_025425, intron 4 of 6)	-1328.0	NM_013759	27361.0	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	2.5	1.0	1.5	2.0	1.0	4.5
Merged-chr1-178303569-4	chr1	178303078	178304078	+	996.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15575.0	NM_025511	66359.0	Mm.489720	NM_025511	ENSMUSG00000026500	Cox20	2310005N03Rik|Fam36a	COX20 Cox2 chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171713582-4	chr1	171713039	171714039	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31547.0	NM_001360767	12506.0	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	11.0	9.5	16.0	27.5	10.0	16.5
Merged-chr11-121769009-4	chr11	121768509	121769509	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61209.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22814551-4	chr11	22814040	22815040	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45195.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129019044-4	chr4	129018545	129019545	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25821.0	NM_001033966	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122153043-4	chr2	122152542	122153542	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009735)	TTS (NM_009735)	5355.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	19.5	45.0	12.0	12.0	41.0	11.0
Merged-chr7-67370412-4	chr7	67369928	67370928	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 1 of 11)	intron (NM_001357324, intron 1 of 11)	2430.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136029572-3	chr4	136029064	136030064	+	996.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7915.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	22.5	16.0	11.5	37.0	88.5	51.0
Merged-chr2-31763468-4	chr2	31762973	31763973	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	3300.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58797552-4	chr1	58797034	58798034	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009812, intron 1 of 8)	intron (NM_009812, intron 1 of 8)	2160.0	NM_009812	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	28.5	55.0	25.0	6.0	56.5	30.5
Merged-chr7-73541196-2	chr7	73540696	73541696	+	996.3333130000001	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037569, exon 5 of 5)	non-coding (NR_037569, exon 5 of 5)	550.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75686738-4	chr7	75686233	75687233	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 13 of 36)	intron (NM_029332, intron 13 of 36)	-161605.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-26234905-4	chr13	26234416	26235416	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77490.0	NR_045933	73576.0	Mm.45473	NR_045933	ENSMUSG00000084811	1700092E19Rik	-	RIKEN cDNA 1700092E19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-126073898-4	chr2	126073402	126074402	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008008, intron 2 of 3)	intron (NM_008008, intron 2 of 3)	39244.0	NM_008008	14178.0	Mm.330557	NM_008008	ENSMUSG00000027208	Fgf7	Kgf	fibroblast growth factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-11822518-4	chr18	11822016	11823016	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045421, intron 3 of 3)	intron (NR_045421, intron 3 of 3)	-16758.0	NM_001146287	63955.0	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	4.5	24.0	23.0	5.5	12.0	9.5
Merged-chr4-134005774-4	chr4	134005287	134006287	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145833, exon 4 of 4)	3' UTR (NM_145833, exon 4 of 4)	-4923.0	NM_026144	67422.0	Mm.100290	NM_026144	ENSMUSG00000012117	Dhdds	3222401G21Rik|CIT|DS|HDS|W91638	dehydrodolichyl diphosphate synthase	protein-coding	19.0	18.0	17.0	23.0	43.0	13.5
Merged-chr5-141014394-4	chr5	141013896	141014896	+	996.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13800.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70880274-4	chr14	70879730	70880730	+	996.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9877.0	NM_001302095	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	15.0	20.0	15.5	25.5	18.5	37.0
Merged-chr6-134120418-4	chr6	134119920	134120920	+	996.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	84720.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	11.5	54.0	38.0	5.5	39.5	15.5
Merged-chr2-128429933-4	chr2	128429435	128430435	+	996.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028589)	promoter-TSS (NR_028589)	-584.0	NR_028590	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	9.0	57.5	44.5	22.5	35.0	24.0
Merged-chr6-31077500-4	chr6	31076994	31077994	+	996.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14401.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-26711635-4	chr18	26711126	26712126	+	996.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-957469.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-83830127-4	chr18	83829621	83830621	+	996.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	256441.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113857676-4	chr6	113857213	113858213	+	996.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009723, intron 3 of 21)	intron (NM_009723, intron 3 of 21)	33826.0	NM_001036684	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-126164799-4	chr2	126164297	126165297	+	996.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026981, exon 5 of 5)	exon (NM_026981, exon 5 of 5)	12656.0	NM_026981	69185.0	Mm.29019	NM_026981	ENSMUSG00000023330	Dtwd1	1810033A06Rik	DTW domain containing 1	protein-coding	0.0	0.5	0.0	0.0	0.5	0.0
Merged-chr16-17815555-4	chr16	17815046	17816046	+	996.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-17573.0	NR_027959	433004.0	Mm.310200	NM_001002790		B830017H08Rik	-	RIKEN cDNA B830017H08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29661915-4	chr2	29661430	29662430	+	996.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	42210.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-62129960-4	chr13	62129488	62130488	+	996.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039239)	promoter-TSS (NM_001039239)	98.0	NM_001039239	630579.0	Mm.440905	NM_001039239	ENSMUSG00000074867	Zfp808	EG630579|Gm7036	zinc finger protein 808	protein-coding	0.0	5.5	9.0	7.0	1.5	8.0
Merged-chr1-191277850-4	chr1	191277296	191278296	+	996.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40322.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	3.0	0.5	0.0	0.0	7.0	0.0
Merged-chr16-35765097-3	chr16	35764607	35765607	+	996.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	MTD|LTR|ERVL-MaLR	4249.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	72.5	144.0	72.0	84.0	145.5	105.0
Merged-chr16-21477310-3	chr16	21476802	21477802	+	996.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 17 of 46)	intron (NM_001081366, intron 17 of 46)	54184.0	NM_001285894	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149780064-6	chr4	149779546	149780546	+	996.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-5779.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	51.5	93.0	75.5	25.0	86.5	62.5
Merged-chr2-6213167-5	chr2	6212674	6213674	+	996.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024208)	promoter-TSS (NM_024208)	-180.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	12.5	12.0	0.0	7.5	0.0	3.5
Merged-chr1-172148715-4	chr1	172148244	172149244	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357204, intron 1 of 13)	intron (NM_001357204, intron 1 of 13)	729.0	NM_001357204	98193.0	Mm.159915	NM_153555	ENSMUSG00000026554	Dcaf8	AA408877|AA433120|AA792214|AU018973|C76055|D1Dau35e|D1Ucla4|H326|Wdr42a	DDB1 and CUL4 associated factor 8	protein-coding	165.0	426.5	363.5	196.0	437.5	298.0
Merged-chr9-123986296-4	chr9	123985813	123986813	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7905.0	NM_007718	12770.0	Mm.423532	NM_007718	ENSMUSG00000064039	Ccr1l1	Cmkbr1l1	chemokine (C-C motif) receptor 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117072326-4	chr11	117071828	117072828	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4455.0	NR_027059	76972.0	Mm.309167	NR_027059	ENSMUSG00000086859	Snhg20	2810008D09Rik	small nucleolar RNA host gene 20	ncRNA	0.0	2.5	0.0	0.0	2.5	0.0
Merged-chr13-92923762-4	chr13	92923273	92924273	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78986.0	NM_001162945	382793.0	Mm.296770	NM_001162945	ENSMUSG00000021704	Mtx3	4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514	metaxin 3	protein-coding	24.0	12.5	21.5	0.0	7.0	0.0
Merged-chr9-14244600-4	chr9	14244086	14245086	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31715.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57523902-4	chr9	57523362	57524362	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007747, intron 1 of 4)	intron (NM_007747, intron 1 of 4)	2630.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99724576-4	chr15	99724073	99725073	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155353)	promoter-TSS (NR_155353)	-99.0	NR_155353	102638434.0	Mm.364438	NR_155353		Gm16537	-	predicted gene 16537	ncRNA	31.0	129.5	49.0	38.0	61.0	55.0
Merged-chr2-32602897-4	chr2	32602400	32603400	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025311, intron 1 of 4)	intron (NM_001025311, intron 1 of 4)	3191.0	NM_001025311	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24348182-4	chr16	24347636	24348636	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45214.0	NM_178665	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	4.0	3.0	0.0	4.5	3.0
Merged-chr10-53509318-4	chr10	53508813	53509813	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037973, intron 3 of 3)	intron (NR_037973, intron 3 of 3)	9676.0	NR_037973	100502868.0	Mm.297722	NR_037973	ENSMUSG00000112739	Gm20597	B230314j19	predicted gene, 20597	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22657077-4	chr16	22656571	22657571	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_138650, exon 1 of 25)	5' UTR (NM_138650, exon 1 of 25)	160.0	NM_138650	110197.0	Mm.194986	NM_138650	ENSMUSG00000022861	Dgkg	2900055E17Rik|90kDa|AI854428|Dagk3|E430001K23Rik|mKIAA4131	diacylglycerol kinase, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129063280-4	chr4	129062778	129063778	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 1 of 8)	ID4_|SINE|ID	5007.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70860786-4	chr14	70860297	70861297	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045939, intron 2 of 3)	MTD|LTR|ERVL-MaLR	7864.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	7.5	48.5	25.0	24.5	46.5	76.5
Merged-chr6-87207853-4	chr6	87207374	87208374	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054041, intron 13 of 17)	intron (NM_054041, intron 13 of 17)	103128.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	11.0	26.0	47.0	9.5	29.0	11.5
Merged-chr8-108827628-4	chr8	108827136	108828136	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 3 of 9)	intron (NM_007496, intron 3 of 9)	-109224.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	17.5	35.5	35.0	25.0	53.5	61.5
Merged-chr7-80641591-4	chr7	80640937	80641937	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040343, intron 4 of 4)	intron (NR_040343, intron 4 of 4)	5420.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	35.0	102.0	54.0	57.5	145.0	62.5
Merged-chr6-8505066-4	chr6	8504561	8505561	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	4100.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-133554931-3	chr2	133554427	133555427	+	996.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007553, intron 2 of 2)	intron (NM_007553, intron 2 of 2)	2768.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-22361496-6	chr17	22360949	22361949	+	996.2222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176962)	promoter-TSS (NM_176962)	-4.0	NM_001347330	224598.0	Mm.390945	NM_145484	ENSMUSG00000044501	Zfp758	BC021442	zinc finger protein 758	protein-coding	19.5	88.5	46.0	5.0	11.0	9.5
Merged-chr10-11323758-3	chr10	11323256	11324256	+	996.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19689.0	NM_010146	13853.0	Mm.89946	NM_010146	ENSMUSG00000055493	Epm2a	TG-B|Tg(TcraK,TcrbK)TG-BFlv	epilepsy, progressive myoclonic epilepsy, type 2 gene alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95639827-3	chr13	95639347	95640347	+	996.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 30 of 35)	intron (NM_027711, intron 30 of 35)	-21381.0	NM_010169	14062.0	Mm.24816	NM_010169	ENSMUSG00000048376	F2r	AI482343|Cf2r|Par1|ThrR	coagulation factor II (thrombin) receptor	protein-coding	43.5	30.0	40.5	6.0	5.0	11.0
Merged-chr11-98203698-3	chr11	98203234	98204234	+	996.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001109626, exon 1 of 14)	exon (NM_001109626, exon 1 of 14)	429.0	NM_001109626	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65699043-4	chr17	65698560	65699560	+	996.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 3 of 6)	intron (NM_133685, intron 3 of 6)	-56856.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	6.0	1.5	9.0	0.0	4.0	2.5
Merged-chr17-23592753-4	chr17	23592253	23593253	+	996.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011747, intron 1 of 5)	CpG	-6501.0	NM_001356268	22654.0	Mm.40326	NM_011747	ENSMUSG00000062012	Zfp13	AI835008|Krox-8|Zfp-13	zinc finger protein 13	protein-coding	0.0	0.0	3.0	0.0	0.0	3.0
Merged-chr17-23998550-4	chr17	23998044	23999044	+	996.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133731)	promoter-TSS (NM_133731)	-444.0	NM_133731	70835.0	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	0.0	8.0	0.0	0.5	11.5	1.0
Merged-chr2-167005060-4	chr2	167004572	167005572	+	996.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-8773.0	NM_001109905	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-65406129-4	chr16	65405692	65406692	+	996.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114437.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	20.0	25.5	20.5	16.5	52.0	35.0
Merged-chr2-11766702-4	chr2	11766201	11767201	+	996.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348235, intron 3 of 20)	intron (NM_001348235, intron 3 of 20)	10884.0	NM_001348234	50755.0	Mm.24088	NM_015792	ENSMUSG00000058594	Fbxo18	AU015756|Fbh1|Fbx18	F-box protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89078412-4	chr15	89077909	89078909	+	996.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026485, intron 1 of 9)	intron (NM_026485, intron 1 of 9)	2345.0	NM_001355617	67976.0	Mm.284710	NM_026485	ENSMUSG00000015363	Trabd	5730502D15Rik|AL023039	TraB domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-31713340-4	chr11	31712835	31713835	+	996.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41473.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	162.0	163.0	199.5	82.5	90.5	145.5
Merged-chr9-77911676-4	chr9	77911171	77912171	+	996.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5694.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	46.5	77.5	74.0	25.0	64.5	97.0
Merged-chr12-112760515-8	chr12	112760025	112761025	+	996.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178911)	promoter-TSS (NM_178911)	-130.0	NM_178911	104759.0	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111726146-4	chr12	111725497	111726497	+	996.1785890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163388, intron 3 of 5)	intron (NM_001163388, intron 3 of 5)	12728.0	NM_026511	68020.0	Mm.425762	NM_026511	ENSMUSG00000037787	Apopt1	1700081D05Rik|2810002N01Rik|Apop-1|Apop1	apoptogenic, mitochondrial 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135652956-4	chr7	135652451	135653451	+	996.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015548)	promoter-TSS (NR_015548)	-637.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110458883-4	chr12	110458300	110459300	+	996.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001135001, intron 2 of 13)	L1MA5A|LINE|L1	11621.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23697621-4	chr13	23697131	23698131	+	996.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178208)	TTS (NM_178208)	827.0	NM_178208	319155.0	Mm.261662	NM_178208	ENSMUSG00000060678	Hist1h4c	-	histone cluster 1, H4c	protein-coding	22.5	70.5	51.0	25.0	43.5	45.5
Merged-chr14-30612716-4	chr14	30612222	30613222	+	996.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	-2412.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	5.0	10.5	6.0	2.0	3.0	4.0
Merged-chr5-123080318-4	chr5	123079837	123080837	+	996.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039723, intron 1 of 11)	intron (NM_001039723, intron 1 of 11)	4062.0	NM_001039723	330189.0	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35062325-4	chr9	35061888	35062888	+	996.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	RMER6B|LTR|ERVK	-54340.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	39.5	85.5	59.5	43.0	77.5	70.5
Merged-chr9-102834888-4	chr9	102834405	102835405	+	996.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013649)	promoter-TSS (NM_013649)	-15.0	NM_013649	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	8.0	5.0	3.0	8.0	5.0	5.5
Merged-chr15-73442586-4	chr15	73442094	73443094	+	996.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19403.0	NM_001358045	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106817769-4	chr1	106817240	106818240	+	996.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21015.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	13.0	24.0	7.0	16.5	29.0	12.0
Merged-chr6-129498031-4	chr6	129497536	129498536	+	996.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138648, intron 3 of 7)	intron (NM_138648, intron 3 of 7)	9129.0	NM_138648	108078.0	Mm.293626	NM_138648	ENSMUSG00000030162	Olr1	LOX-1|SR-EI|Scare1	oxidized low density lipoprotein (lectin-like) receptor 1	protein-coding	0.0	6.5	4.5	11.0	15.0	13.5
Merged-chr2-179955797-2	chr2	179955297	179956297	+	996.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081092, intron 1 of 14)	MTD|LTR|ERVL-MaLR	20849.0	NM_001081092	228980.0	Mm.235542	NM_001081092	ENSMUSG00000039117	Taf4	135kDa|AI450312|TAFII130|TAFII135|Taf2c1|Taf4a	TATA-box binding protein associated factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117374951-7	chr5	117374424	117375424	+	996.160706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021539, intron 5 of 8)	intron (NM_021539, intron 5 of 8)	14099.0	NM_028128	72151.0	Mm.27997	NM_028128	ENSMUSG00000029363	Rfc5	2610020K06Rik|2610209F07Rik|36.5kDa|36kDa|Recc5	replication factor C (activator 1) 5	protein-coding	45.5	95.5	116.5	70.5	107.0	117.5
Merged-chr12-85496989-4	chr12	85496497	85497497	+	996.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	23107.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59011711-4	chr13	59011223	59012223	+	996.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	204026.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57823229-4	chr6	57822738	57823738	+	996.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 1 of 4)	intron (NM_146168, intron 1 of 4)	1887.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99265501-4	chr10	99265000	99266000	+	996.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026268, intron 2 of 2)	intron (NM_026268, intron 2 of 2)	2269.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-9393587-4	chr14	9393100	9394100	+	996.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-490495.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180043191-4	chr2	180042680	180043680	+	996.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011969)	promoter-TSS (NM_011969)	697.0	NM_178750	269397.0	Mm.63068	NM_178750	ENSMUSG00000039086	Ss18l1	A230053O16Rik|CREST	SS18, nBAF chromatin remodeling complex subunit like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3283002-4	chr19	3282505	3283505	+	996.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009212)	promoter-TSS (NM_009212)	5.0	NM_009212	20589.0	Mm.3179	NM_009212	ENSMUSG00000024831	Ighmbp2	AEP|Catf1|RIPE3b1|Smbp-2|Smbp2|Smubp2|nmd|sma	immunoglobulin mu binding protein 2	protein-coding	17.5	22.5	29.5	13.0	30.0	32.0
Merged-chr11-95336836-4	chr11	95336362	95337362	+	996.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172543)	promoter-TSS (NM_172543)	-156.0	NM_172543	215512.0	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36575470-3	chr5	36574990	36575990	+	996.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113362, intron 2 of 14)	intron (NM_001113362, intron 2 of 14)	6907.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	28.0	59.0	51.5	45.5	74.0	51.5
Merged-chr12-54791645-3	chr12	54791155	54792155	+	996.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026998, intron 2 of 13)	intron (NM_026998, intron 2 of 13)	4007.0	NM_026998	72183.0	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	47.5	111.5	72.0	28.0	52.5	28.0
Merged-chr16-8768728-3	chr16	8768195	8769195	+	996.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30353.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123853045-4	chr9	123852543	123853543	+	996.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011798, exon 2 of 2)	3' UTR (NM_011798, exon 2 of 2)	-1144.0	NM_001110253	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-74671654-2	chr5	74671153	74672153	+	996.083374	f0_balb.idr|f1_balb.idr	intron (NM_001159578, intron 1 of 12)	intron (NM_001159578, intron 1 of 12)	6219.0	NM_001159580	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	11.0	0.0	5.0	19.0	4.5	5.5
Merged-chr5-65696935-4	chr5	65696439	65697439	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081321, intron 1 of 31)	CpG-11111	917.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45161281-4	chr19	45160806	45161806	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10591.0	NM_021901	21908.0	Mm.391203	NM_021901	ENSMUSG00000025215	Tlx1	Hox-11|Hox11|Tlx-1	T cell leukemia, homeobox 1	protein-coding	9.0	19.0	2.5	1.0	6.0	5.0
Merged-chr18-68058530-4	chr18	68058036	68059036	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	125363.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	2.5	4.0	1.0	1.0	8.0	3.5
Merged-chr4-131838298-4	chr4	131837780	131838780	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011214)	promoter-TSS (NM_011214)	-2.0	NM_001083119	19273.0	Mm.4860	NM_011214	ENSMUSG00000028909	Ptpru	Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda	protein tyrosine phosphatase, receptor type, U	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96637367-4	chr9	96636875	96637875	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5872.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-31600300-3	chr10	31599795	31600795	+	996.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146349, intron 1 of 5)	intron (NM_001146349, intron 1 of 5)	9430.0	NM_001146349	268291.0	Mm.295212	NM_001146349	ENSMUSG00000063760	Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-10899881-4	chr8	10899397	10900397	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102285)	promoter-TSS (NR_102285)	-25.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27439859-4	chr3	27439354	27440354	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 24 of 26)	intron (NM_001356953, intron 24 of 26)	68503.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-42912358-4	chr17	42911860	42912860	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35936.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83351812-4	chr17	83351303	83352303	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357886, intron 1 of 21)	intron (NM_001357886, intron 1 of 21)	872.0	NM_001357886	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92318353-4	chr5	92317861	92318861	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-8337.0	NM_172713	231452.0	Mm.86564	NM_172713	ENSMUSG00000029415	Sdad1	4931421J16|AA591032|AW538460	SDA1 domain containing 1	protein-coding	1.0	12.5	27.5	8.0	28.0	26.5
Merged-chr6-129623930-4	chr6	129623442	129624442	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286018)	promoter-TSS (NM_001286018)	-78.0	NM_001286018	27007.0	Mm.8217	NM_033078	ENSMUSG00000030149	Klrk1	D6H12S2489E|NKG2-D|Nkg2d	killer cell lectin-like receptor subfamily K, member 1	protein-coding	59.5	145.5	118.0	106.5	212.5	116.0
Merged-chr6-125332969-4	chr6	125332442	125333442	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011324, intron 3 of 11)	intron (NM_011324, intron 3 of 11)	11602.0	NM_011324	20276.0	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	9.5	71.0	41.5	10.0	28.5	19.0
Merged-chr8-109779414-6	chr8	109778892	109779892	+	996.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301211, intron 1 of 22)	intron (NM_001301211, intron 1 of 22)	809.0	NM_001301211	11765.0	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding	102.0	201.5	224.5	106.0	206.5	230.5
Merged-chr2-167754888-3	chr2	167754412	167755412	+	996.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63735.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70392769-7	chr14	70392253	70393253	+	996.0476070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021308, intron 16 of 22)	intron (NM_021308, intron 16 of 22)	36341.0	NM_021308	57746.0	Mm.85253	NM_021308	ENSMUSG00000033644	Piwil2	Piwil1l|mili	piwi-like RNA-mediated gene silencing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3726834-6	chr2	3726303	3727303	+	996.0476070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	13345.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-111373589-4	chr7	111373098	111374098	+	996.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-250923.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-52799614-4	chr1	52799195	52800195	+	996.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008384, intron 1 of 5)	intron (NM_008384, intron 1 of 5)	17993.0	NM_008384	16329.0	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	63.0	152.5	85.5	85.0	147.5	67.0
Merged-chr2-112266391-4	chr2	112265901	112266901	+	996.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133649)	promoter-TSS (NM_133649)	87.0	NM_133649	107723.0	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	16.0	51.0	26.0	19.0	37.0	20.0
Merged-chr4-84862128-4	chr4	84861624	84862624	+	996.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-22185.0	NM_175275	338349.0	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	5.5	3.0	0.0	2.5	0.0	5.0
Merged-chr17-24523164-1	chr17	24522664	24523664	+	996.0	f1_balb.idr	intron (NM_001172113, intron 1 of 20)	intron (NM_001172113, intron 1 of 20)	4774.0	NM_153792	224619.0	Mm.275150	NM_153792	ENSMUSG00000052752	Traf7	RFWD1	TNF receptor-associated factor 7	protein-coding	0.0	0.0	0.5	0.0	2.5	3.0
Merged-chr17-30591068-2	chr17	30590568	30591568	+	996.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14781.0	NM_027060	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-108429025-2	chr5	108428525	108429525	+	996.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008806, intron 19 of 21)	intron (NM_008806, intron 19 of 21)	5374.0	NR_154996	11958.0	Mm.136093	NM_007507	ENSMUSG00000050856	Atp5k	2610008D24Rik|Atp5i|Lfm1	ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-83810120-1	chr2	83809620	83810620	+	996.0	f1_balb.idr	Intergenic	Intergenic	-2608.0	NM_175514	241520.0	Mm.330351	NM_175514	ENSMUSG00000048388	Fam171b	D430039N05Rik	family with sequence similarity 171, member B	protein-coding	0.0	1.0	4.0	0.5	8.0	3.0
Merged-chr12-35319783-4	chr12	35319284	35320284	+	996.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124887.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	78.5	87.5	82.5	19.0	89.0	56.0
Merged-chr9-7346850-2	chr9	7346350	7347350	+	996.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001320076)	promoter-TSS (NM_001320076)	-524.0	NM_001320076	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38298177-4	chr18	38297664	38298664	+	996.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361267, intron 2 of 9)	intron (NM_001361267, intron 2 of 9)	1359.0	NM_001164621	56736.0	Mm.228903	NM_020012	ENSMUSG00000060450	Rnf14	2310075C09Rik|2610005D23Rik|AA986456|AU041447|D18Ertd188e|D7Bwg0165e|Triad2	ring finger protein 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118677078-2	chr9	118676520	118677520	+	996.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 11 of 27)	intron (NM_133721, intron 11 of 27)	-34672.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	1.5	5.0	2.5	0.5	0.0	5.0
Merged-chr4-125051862-2	chr4	125051362	125052362	+	996.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145552, intron 12 of 15)	intron (NM_145552, intron 12 of 15)	13795.0	NM_175223	75563.0	Mm.50304	NM_175223	ENSMUSG00000042707	Dnali1	1700023A09Rik|AW049135	dynein, axonemal, light intermediate polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-30267134-1	chr11	30266634	30267634	+	996.0	f1_balb.idr	Intergenic	Intergenic	-47362.0	NM_175836	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128669830-2	chr4	128669330	128670330	+	996.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	L1MEf|LINE|L1	15128.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52589248-4	chr13	52588745	52589745	+	996.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198977, intron 1 of 13)	intron (NM_001198977, intron 1 of 13)	5808.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99154860-2	chr7	99154361	99155361	+	996.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026384, intron 7 of 7)	intron (NM_026384, intron 7 of 7)	-13717.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	3.0	2.0	0.0	0.0	2.5	4.5
Merged-chr11-119862659-2	chr11	119862159	119863159	+	996.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028898, intron 20 of 33)	intron (NM_028898, intron 20 of 33)	-19630.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91353463-2	chr1	91352963	91353963	+	996.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027551, intron 1 of 7)	intron (NM_027551, intron 1 of 7)	2390.0	NM_027551	70788.0	Mm.68617	NM_027551	ENSMUSG00000026308	Klhl30	4631423F02Rik	kelch-like 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111158943-2	chr12	111158443	111159443	+	996.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_130987)	TTS (NR_130987)	-7427.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79742155-4	chr2	79741657	79742657	+	996.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110980, intron 2 of 2)	intron (NR_110980, intron 2 of 2)	34377.0	NM_001290743	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	4.0	0.0	5.5	2.0	2.5	3.5
Merged-chr6-100799204-1	chr6	100798704	100799704	+	996.0	f1_c57bl6.idr	intron (NM_198612, intron 6 of 6)	intron (NM_198612, intron 6 of 6)	-34434.0	NM_182939	232314.0	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding	1.5	1.5	1.0	0.0	3.0	0.0
Merged-chr12-21368585-4	chr12	21368177	21369177	+	996.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291871, intron 1 of 18)	intron (NM_001291871, intron 1 of 18)	4955.0	NR_102380	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	255.5	604.0	434.0	94.5	266.5	186.0
Merged-chr14-55593242-2	chr14	55592742	55593742	+	996.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194346, intron 5 of 20)	B2_Mm2|SINE|B2	1500.0	NM_194346	268749.0	Mm.23748	NM_194346	ENSMUSG00000047098	Rnf31	AL033293|BC031509|Flj10111|HOIP|Paul|mFLJ00217	ring finger protein 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4438662-2	chr19	4438162	4439162	+	996.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045990)	promoter-TSS (NR_045990)	-661.0	NR_045990	319314.0	Mm.393810	NR_045989	ENSMUSG00000087132	A930001C03Rik	-	RIKEN cDNA A930001C03 gene	ncRNA	0.0	8.0	0.5	4.5	0.0	0.0
Merged-chr13-58130473-2	chr13	58129973	58130973	+	996.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1917.0	NM_029872	77134.0	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	12.5	12.5	9.5	12.5	17.0	15.5
Merged-chr13-81241290-4	chr13	81240798	81241798	+	996.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 85 of 89)	intron (NM_054053, intron 85 of 89)	277224.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109474366-2	chr11	109473866	109474866	+	996.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029842)	promoter-TSS (NM_001029842)	-770.0	NM_001029842	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50826341-4	chr15	50825848	50826848	+	996.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 3 of 5)	L1MEg|LINE|L1	62701.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	4.5	51.0	21.5	9.5	26.0	18.5
Merged-chr17-79613821-2	chr17	79613379	79614379	+	996.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-1021.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55355139-2	chr12	55354639	55355639	+	996.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025373, intron 4 of 6)	intron (NM_025373, intron 4 of 6)	-29083.0	NM_001310583	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26937583-2	chr17	26937083	26938083	+	996.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026307)	TTS (NM_026307)	1875.0	NR_104458	67675.0	Mm.439919	NM_026307	ENSMUSG00000024194	Cuta	0610039D01Rik|1810022E02Rik|1810060C03Rik|2700094G22Rik|AI326454	cutA divalent cation tolerance homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45390791-4	chr13	45390228	45391228	+	995.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153789, intron 1 of 6)	intron (NM_153789, intron 1 of 6)	986.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	16.0	112.5	66.5	41.0	56.5	81.0
Merged-chr6-13872335-4	chr6	13871824	13872824	+	995.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001352887)	promoter-TSS (NM_001352887)	755.0	NR_045995	76311.0	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-3891059-4	chr18	3890554	3891554	+	995.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-274778.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131017357-4	chr1	131016858	131017858	+	995.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2487.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-94265691-4	chr2	94265183	94266183	+	995.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4284.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70695428-4	chr8	70694923	70695923	+	995.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2316.0	NM_010592	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	84.5	94.5	86.5	48.0	177.0	85.0
Merged-chr14-121916479-4	chr14	121915977	121916977	+	995.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182806)	promoter-TSS (NM_182806)	-703.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	5.5	16.5	17.0	1.5	11.0	14.0
Merged-chr11-116842905-4	chr11	116842283	116843283	+	995.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028865)	promoter-TSS (NM_028865)	666.0	NM_033398	107817.0	Mm.481684	NM_033398	ENSMUSG00000056962	Jmjd6	5730436I23Rik|D11Ertd195e|PSR|PtdSerR|Ptdsr|mKIAA0585	jumonji domain containing 6	protein-coding	6.0	8.0	13.0	10.5	12.5	13.0
Merged-chr17-87972210-4	chr17	87971698	87972698	+	995.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-2852.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53560150-3	chr11	53559651	53560651	+	995.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7218.0	NM_008443	16568.0	Mm.88694	NM_008443	ENSMUSG00000018395	Kif3a	Kif3|Kifl|Kns3	kinesin family member 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63193741-7	chr14	63193186	63194186	+	995.9428710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201610)	promoter-TSS (NM_201610)	-161.0	NM_201610	382913.0	Mm.239490	NM_201610	ENSMUSG00000035121	Neil2	Gm1212|NEH2	nei like 2 (E. coli)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-37869789-4	chr16	37869253	37870253	+	995.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177093, intron 1 of 3)	intron (NM_177093, intron 1 of 3)	1353.0	NM_177093	320184.0	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167774068-2	chr2	167773568	167774568	+	995.9285890000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82891.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-37213093-4	chr6	37212585	37213585	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	86891.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-103655484-4	chr5	103654999	103655999	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028824, exon 1 of 4)	5' UTR (NM_028824, exon 1 of 4)	225.0	NM_028824	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146686157-4	chr6	146685703	146686703	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28985.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	27.0	16.5	8.0	5.5	17.5	4.5
Merged-chr6-119360482-4	chr6	119359963	119360963	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355692, intron 4 of 7)	intron (NM_001355692, intron 4 of 7)	28271.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-94669867-4	chr9	94669382	94670382	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177909)	promoter-TSS (NM_177909)	-10.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-37492157-4	chr17	37491661	37492661	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146328)	promoter-TSS (NM_146328)	-307.0	NM_146328	258325.0	Mm.484339	NM_146328	ENSMUSG00000090894	Olfr110	MOR249-2	olfactory receptor 110	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4510031-4	chr7	4509522	4510522	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011618, exon 8 of 14)	exon (NM_011618, exon 8 of 14)	5953.0	NM_001277903	21955.0	Mm.358643	NM_011618	ENSMUSG00000064179	Tnnt1	AW146156|Tnt|sTnT|ssTnT	troponin T1, skeletal, slow	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76745275-4	chr15	76744775	76745775	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 3 of 10)	intron (NM_198420, intron 3 of 10)	-21430.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19845294-4	chr7	19844806	19845806	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6697.0	NM_001270489	100502736.0	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108399998-4	chr6	108399523	108400523	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 31 of 61)	intron (NM_010585, intron 31 of 61)	-89720.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	18.5	4.5	2.0	10.0	15.5	14.0
Merged-chr3-9573804-4	chr3	9573318	9574318	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133218, intron 1 of 8)	intron (NM_133218, intron 1 of 8)	36267.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116676649-4	chr6	116676155	116677155	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2819.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-64652504-4	chr14	64652018	64653018	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081177)	promoter-TSS (NM_001081177)	-13.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	4.5	14.5	9.5	11.5	19.0	8.5
Merged-chr4-48042047-2	chr4	48041547	48042547	+	995.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3258.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-12023572-4	chr2	12023060	12024060	+	995.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	245807.0	NM_177268	320816.0	Mm.260201	NM_177268	ENSMUSG00000047909	Ankrd16	2810455F06Rik|AI646698|D430029B21Rik	ankyrin repeat domain 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67693768-4	chr10	67693260	67694260	+	995.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121801.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101692996-4	chr4	101692505	101693505	+	995.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24402.0	NM_001122899	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44067473-4	chr19	44066960	44067960	+	995.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145502, intron 2 of 10)	intron (NM_145502, intron 2 of 10)	2226.0	NM_145502	226144.0	Mm.279865	NM_145502	ENSMUSG00000025198	Erlin1	2810439N09Rik|C80197|Keo4|Spfh1	ER lipid raft associated 1	protein-coding	8.5	8.0	6.0	7.5	5.0	3.0
Merged-chr6-31427462-4	chr6	31426962	31427962	+	995.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013791, intron 3 of 17)	intron (NM_013791, intron 3 of 17)	28634.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99576109-4	chr12	99575622	99576622	+	995.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136760, intron 2 of 3)	intron (NR_136760, intron 2 of 3)	12281.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133887832-8	chr4	133887300	133888300	+	995.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285505)	promoter-TSS (NM_001285505)	-3.0	NM_009097	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	6.5	23.0	17.0	4.0	26.5	11.5
Merged-chr2-77309508-4	chr2	77309025	77310025	+	995.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28933.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147125070-4	chr4	147124571	147125571	+	995.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-50795.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25473974-3	chr15	25473548	25474548	+	995.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59856.0	NR_027376	432939.0	Mm.146555	NM_001013791		Gm5468	100040583|EG432939	predicted gene 5468	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50205364-2	chr17	50204864	50205864	+	995.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14867.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61134230-4	chr10	61133711	61134711	+	995.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009163, intron 2 of 14)	RLTR17|LTR|ERVK	13473.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64237806-4	chr5	64237231	64238231	+	995.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	Lx9|LINE|L1	7374.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	11.5	24.0	30.5	20.0	47.0	39.5
Merged-chr12-81971158-6	chr12	81970608	81971608	+	995.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018814, intron 19 of 35)	intron (NM_018814, intron 19 of 35)	111078.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-26444190-3	chr12	26443679	26444679	+	995.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021384, exon 6 of 6)	3' UTR (NM_021384, exon 6 of 6)	12273.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	14.5	21.5	23.5	52.5	39.0	27.0
Merged-chr16-24773932-4	chr16	24773428	24774428	+	995.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 8 of 12)	AT_rich|Low_complexity|Low_complexity	52073.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141468735-4	chr7	141468228	141469228	+	995.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111050)	promoter-TSS (NM_001111050)	-61.0	NM_001111050	12476.0	Mm.30246	NM_009842	ENSMUSG00000025510	Cd151	PETA-3|SFA-1|Tspan24	CD151 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5167512-4	chr6	5166987	5167987	+	995.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011134)	TTS (NM_011134)	26459.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-157412060-2	chr1	157411560	157412560	+	995.8333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027984)	promoter-TSS (NR_027984)	-292.0	NR_027984	69953.0	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	10.0	15.0	8.0	2.0	10.0	22.5
Merged-chr8-77421267-4	chr8	77420757	77421757	+	995.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 5 of 22)	intron (NM_030113, intron 5 of 22)	-95799.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152682738-4	chr1	152682333	152683333	+	995.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	-57616.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57339643-4	chr16	57339158	57340158	+	995.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025599, intron 1 of 9)	intron (NM_025599, intron 1 of 9)	-13619.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117803453-4	chr11	117802959	117803959	+	995.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029964, intron 3 of 5)	MIRb|SINE|MIR	5799.0	NM_029964	77727.0	Mm.159981	NM_029964	ENSMUSG00000025573	6030468B19Rik	Il-40	RIKEN cDNA 6030468B19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87313523-4	chr17	87312999	87313999	+	995.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 5 of 19)	intron (NM_028639, intron 5 of 19)	30613.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	34.5	55.0	73.5	24.0	48.0	48.5
Merged-chr13-74639108-4	chr13	74638617	74639617	+	995.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030711)	promoter-TSS (NM_030711)	-736.0	NM_030711	80898.0	Mm.83526	NM_030711	ENSMUSG00000021583	Erap1	A-LAP|ARTS-1|Arts1|ERAAP|PILSA|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132760491-4	chr4	132759997	132760997	+	995.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3326.0	NM_133888	100340.0	Mm.287187	NM_133888	ENSMUSG00000028885	Smpdl3b	1110054A24Rik|AU045240|Asml3b	sphingomyelin phosphodiesterase, acid-like 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115236028-4	chr5	115235535	115236535	+	995.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026398, intron 1 of 5)	intron (NM_026398, intron 1 of 5)	184.0	NM_026398	117109.0	Mm.24636	NM_026398	ENSMUSG00000060152	Pop5	1500019J17Rik|2700077E03Rik|AW049989|Rnasep3	processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56397271-4	chr19	56396738	56397738	+	995.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007611, exon 1 of 7)	5' UTR (NM_007611, exon 1 of 7)	109.0	NM_007611	12369.0	Mm.35687	NM_007611	ENSMUSG00000025076	Casp7	AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7	caspase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4969298-4	chr2	4968776	4969776	+	995.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-6846.0	NM_001311208	68527.0	Mm.27791	NM_026754	ENSMUSG00000026668	Ucma	1110017I16Rik|AW121955|Grp	upper zone of growth plate and cartilage matrix associated	protein-coding	5.5	1.0	3.5	6.5	0.5	2.5
Merged-chr9-108460151-4	chr9	108459649	108460649	+	995.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133744)	promoter-TSS (NM_133744)	-369.0	NM_133744	72454.0	Mm.46488	NM_133744	ENSMUSG00000049305	Ccdc71	2600016J21Rik	coiled-coil domain containing 71	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50459701-4	chr9	50459198	50460198	+	995.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34827.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65578113-6	chr9	65577592	65578592	+	995.785706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 1 of 5)	intron (NM_153119, intron 1 of 5)	1995.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	78.0	281.5	118.5	143.0	234.5	143.0
Merged-chr14-87044485-4	chr14	87043965	87044965	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019670, intron 4 of 27)	intron (NM_019670, intron 4 of 27)	96759.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	4.0	3.0	7.5	0.5	3.0	2.5
Merged-chr4-141998825-4	chr4	141998323	141999323	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 2 of 31)	intron (NM_177868, intron 2 of 31)	12828.0	NM_177868	329977.0	Mm.252019	NM_028429	ENSMUSG00000051435	Fhad1	2900090M10Rik|B230311F11	forkhead-associated (FHA) phosphopeptide binding domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-21954931-4	chr6	21954426	21955426	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311061, intron 4 of 11)	MTD|LTR|ERVL-MaLR	5311.0	NM_023626	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108504947-4	chr6	108504465	108505465	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 53 of 61)	intron (NM_010585, intron 53 of 61)	15222.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	20.0	61.5	44.5	28.5	69.0	73.0
Merged-chr5-91278695-4	chr5	91278208	91279208	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040428, intron 3 of 5)	intron (NR_040428, intron 3 of 5)	4368.0	NR_040428	100503265.0	Mm.125059	NR_040428	ENSMUSG00000107198	Gm19619	-	predicted gene, 19619	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131060546-4	chr1	131060024	131061024	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	37319.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	2.0	3.5	13.5	6.5	3.5	2.5
Merged-chr7-101404449-2	chr7	101403949	101404949	+	995.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 29 of 33)	intron (NM_001040111, intron 29 of 33)	10061.0	NM_198096	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-105300867-4	chr13	105300362	105301362	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6377.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77607469-4	chr10	77606922	77607922	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301671, intron 1 of 3)	B1_Mur4|SINE|Alu	824.0	NM_001301671	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36662886-4	chr16	36662387	36663387	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	3190.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20899129-4	chr11	20898629	20899629	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68021.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21068574-4	chr19	21068098	21069098	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36112.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	2.5	6.5	18.5	10.0	14.5	16.0
Merged-chr2-48816584-4	chr2	48816070	48817070	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007396, intron 1 of 10)	intron (NM_007396, intron 1 of 10)	2461.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52270083-4	chr3	52269609	52270609	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019739, intron 1 of 2)	intron (NM_019739, intron 1 of 2)	1772.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54113057-4	chr11	54112557	54113557	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136076, intron 5 of 15)	intron (NM_001136076, intron 5 of 15)	12133.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50225281-4	chr11	50224799	50225799	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145926)	promoter-TSS (NM_145926)	-36.0	NM_145926	103534.0	Mm.86759	NM_145926	ENSMUSG00000036620	Mgat4b	AA407995|GnTIVb	mannoside acetylglucosaminyltransferase 4, isoenzyme B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-143917784-4	chr1	143917282	143918282	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86367.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94609420-4	chr10	94608923	94609923	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23224.0	NR_106070	102466817.0		NR_106070	ENSMUSG00000098544	Mir7211	Gm27536|mmu-mir-7211	microRNA 7211	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55327865-4	chr13	55327373	55328373	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016662, intron 4 of 5)	intron (NM_016662, intron 4 of 5)	1857.0	NM_016662	17121.0	Mm.20350	NM_016662	ENSMUSG00000021485	Mxd3	4631412E13Rik|Mad3|bHLHc13	Max dimerization protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60736636-4	chr13	60736139	60737139	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 18 of 26)	intron (NM_134062, intron 18 of 26)	49725.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	6.0	2.0	12.5	1.0	13.0	11.0
Merged-chr7-45716999-2	chr7	45716499	45717499	+	995.75	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_203280, exon 2 of 7)	5' UTR (NM_203280, exon 2 of 7)	1003.0	NM_203280	56632.0	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50188189-4	chr6	50187701	50188701	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361248, intron 11 of 13)	intron (NM_001361248, intron 11 of 13)	73568.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	23.5	45.5	20.0	20.0	63.0	41.0
Merged-chr2-60046215-4	chr2	60045714	60046714	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 2 of 35)	intron (NM_001001182, intron 2 of 35)	79526.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166460096-4	chr2	166459602	166460602	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12651.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122643929-4	chr5	122643413	122644413	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011027)	promoter-TSS (NM_011027)	2.0	NM_001038887	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163932368-3	chr2	163931860	163932860	+	995.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13677.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89043065-3	chr6	89042563	89043563	+	995.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53047.0	NR_134978	232217.0	Mm.281744	NM_175017	ENSMUSG00000055403	4933427D06Rik	-	RIKEN cDNA 4933427D06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52585195-4	chr13	52584640	52585640	+	995.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198977, intron 1 of 13)	intron (NM_001198977, intron 1 of 13)	1703.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106212117-4	chr9	106211613	106212613	+	995.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011876, intron 3 of 8)	intron (NM_011876, intron 3 of 8)	9005.0	NM_011876	23999.0	Mm.274346	NM_011876	ENSMUSG00000023277	Twf2	A6-related|AU014993|Ptk9l|Ptk9r	twinfilin actin binding protein 2	protein-coding	2.5	1.0	8.0	19.0	6.0	5.5
Merged-chr14-26612691-4	chr14	26612177	26613177	+	995.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285467, intron 12 of 19)	intron (NM_001285467, intron 12 of 19)	-25457.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5807924-4	chr19	5807425	5808425	+	995.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5253.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-65582898-4	chr16	65582393	65583393	+	995.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-20196.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59244942-4	chr4	59244436	59245436	+	995.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15115.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	32.0	89.5	64.0	33.5	90.5	63.0
Merged-chr2-145699853-4	chr2	145699342	145700342	+	995.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1353.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54143542-4	chr6	54143037	54144037	+	995.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	103605.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	3.5	18.0	16.5	7.0	16.0	12.0
Merged-chr10-119055858-4	chr10	119055353	119056353	+	995.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5354.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0.0	17.5	1.0	3.0	10.5	4.0
Merged-chr5-138155804-4	chr5	138155303	138156303	+	995.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019747)	promoter-TSS (NM_019747)	-59.0	NM_019747	56314.0	Mm.19274	NM_019747	ENSMUSG00000037007	Zfp113	4732456B05Rik|mKIAA4229	zinc finger protein 113	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-115084887-4	chr7	115084374	115085374	+	995.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	133600.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	0.0	4.5	4.5	3.0	0.0	0.0
Merged-chr3-154286581-3	chr3	154286086	154287086	+	995.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43974.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75765252-4	chr10	75764672	75765672	+	995.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172549)	promoter-TSS (NM_172549)	-815.0	NM_172549	104248.0	Mm.257404	NM_172549	ENSMUSG00000020196	Cabin1	A330070M20Rik|Cain|Ppp3in	calcineurin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-38854470-3	chr12	38853973	38854973	+	995.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347379, intron 9 of 11)	intron (NM_001347379, intron 9 of 11)	70762.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24625195-3	chr16	24624694	24625694	+	995.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	95880.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-87831765-3	chr10	87831265	87832265	+	995.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-26500.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8735832-4	chr19	8735301	8736301	+	995.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134139)	promoter-TSS (NM_134139)	-38.0	NM_134139	107071.0	Mm.29627	NM_134139	ENSMUSG00000042729	Wdr74	5730436H21Rik|AA407588	WD repeat domain 74	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75636721-4	chr11	75636222	75637222	+	995.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008916, intron 3 of 11)	intron (NM_008916, intron 3 of 11)	5702.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35645582-4	chr8	35645082	35646082	+	995.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-56562.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	40.0	11.5	20.5	9.5	24.5	22.5
Merged-chr2-11293508-3	chr2	11293055	11294055	+	995.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 16 of 17)	intron (NM_008859, intron 16 of 17)	-45934.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41268017-4	chr13	41267513	41268513	+	995.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001135577, intron 1 of 1)	intron (NM_001135577, intron 1 of 1)	18169.0	NM_001135577	108934.0	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111047466-4	chr9	111046960	111047960	+	995.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9784.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17860293-4	chr17	17859810	17860810	+	995.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-5122.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	1.5	4.0	0.0	1.0	0.0	1.5
Merged-chr15-81803073-2	chr15	81802573	81803573	+	995.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155271)	promoter-TSS (NR_155271)	400.0	NM_153484	21685.0	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-42094891-4	chr9	42094396	42095396	+	995.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011436, intron 3 of 47)	intron (NM_011436, intron 3 of 47)	-17683.0	NM_001357261	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	3.0	3.0	3.5	1.0	4.0	4.5
Merged-chr9-55110645-4	chr9	55110135	55111135	+	995.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38734.0	NM_180600	109161.0	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-116000291-4	chr13	115999793	116000793	+	995.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	309395.0	NM_021459	16392.0	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136582070-4	chr1	136581558	136582558	+	995.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42843.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26113320-4	chr17	26112815	26113815	+	995.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021793)	promoter-TSS (NM_021793)	-1.0	NM_021793	60455.0	Mm.304656	NM_021793	ENSMUSG00000024180	Tmem8	AW490096|GPI-PLA2|M83|Pgap6|Tmem8a	transmembrane protein 8 (five membrane-spanning domains)	protein-coding	0.0	2.0	2.0	0.0	2.0	2.0
Merged-chr7-81789483-4	chr7	81788994	81789994	+	995.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026077)	promoter-TSS (NM_026077)	-41.0	NM_026077	67290.0	Mm.248391	NM_026077	ENSMUSG00000025102	3110040N11Rik	AI851475	RIKEN cDNA 3110040N11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39408864-4	chr1	39408367	39409367	+	995.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018775, intron 2 of 19)	intron (NM_018775, intron 2 of 19)	41016.0	NM_001252218	114641.0	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165878248-4	chr2	165877715	165878715	+	995.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001291158, exon 1 of 24)	5' UTR (NM_001291158, exon 1 of 24)	222.0	NM_001291158	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	37.5	67.0	42.5	39.5	70.0	36.0
Merged-chr10-10744326-4	chr10	10743858	10744858	+	995.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114333, intron 5 of 9)	intron (NM_001114333, intron 5 of 9)	-6688.0	NR_046010	78056.0	Mm.271285	NR_046010	ENSMUSG00000112730	4930567K20Rik	1700038H22Rik	RIKEN cDNA 4930567K20 gene	ncRNA	0.0	0.0	1.5	1.0	0.0	0.0
Merged-chr12-17741730-4	chr12	17741249	17742249	+	995.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	50940.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	3.0	18.5	14.0	8.0	22.0	2.0
Merged-chr8-41284619-4	chr8	41284174	41285174	+	995.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023662, intron 16 of 37)	RCHARR1|DNA|hAT-Charlie	44915.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	55.5	59.5	45.5	2.0	29.5	20.0
Merged-chr7-29263824-2	chr7	29263324	29264324	+	995.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011464, intron 1 of 6)	intron (NM_011464, intron 1 of 6)	-15357.0	NM_028179	72275.0	Mm.441142	NM_028179	ENSMUSG00000030587	2200002D01Rik	2010005J02Rik|H2RSP|IMUP|IMUP-1|IMUP-2	RIKEN cDNA 2200002D01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5220629-4	chr17	5220095	5221095	+	995.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	198172.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95698009-2	chr9	95697509	95698509	+	995.5833130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	52349.0	NM_001311123	22063.0	Mm.149633	NM_011643	ENSMUSG00000032839	Trpc1	Mtrp1|Trp1|Trrp1	transient receptor potential cation channel, subfamily C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-54507785-4	chr9	54507273	54508273	+	995.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-6147.0	NM_172771	235380.0	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37506267-4	chr13	37505788	37506788	+	995.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	160943.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.0	5.0	0.0	0.0	3.0	0.0
Merged-chr9-21547179-4	chr9	21546672	21547672	+	995.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021531, exon 1 of 16)	exon (NM_021531, exon 1 of 16)	278.0	NM_153141	59035.0	Mm.178115	NM_021531	ENSMUSG00000032185	Carm1	Prmt4	coactivator-associated arginine methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102995385-4	chr14	102994888	102995888	+	995.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 2 of 2)	intron (NR_045657, intron 2 of 2)	-12751.0	NM_177715	239217.0	Mm.246466	NM_177715	ENSMUSG00000098557	Kctd12	AU046135|AW538430|Pfet1|Pfetin	potassium channel tetramerisation domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104481511-4	chr3	104481016	104482016	+	995.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025067, intron 9 of 17)	intron (NM_001025067, intron 9 of 17)	30402.0	NM_001025067	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	3.0	4.0	5.0	2.0	4.5	4.5
Merged-chr1-64226231-4	chr1	64225718	64226718	+	995.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104829.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49100599-4	chr13	49100093	49101093	+	995.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290313, intron 4 of 29)	intron (NM_001290313, intron 4 of 29)	47735.0	NM_029361	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60710154-3	chr13	60709653	60710653	+	995.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	RSINE1|SINE|B4	76211.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-78701279-3	chr14	78700749	78701749	+	995.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081336, intron 2 of 29)	intron (NM_001081336, intron 2 of 29)	31480.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.0	0.0	5.0	0.0	1.5	1.0
Merged-chr12-38787893-4	chr12	38787391	38788391	+	995.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163154, intron 1 of 9)	intron (NM_001163154, intron 1 of 9)	4180.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84800454-4	chr8	84799956	84800956	+	995.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010906)	promoter-TSS (NM_010906)	-118.0	NM_001081982	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	7.0	1.5	4.0	0.0	5.0	4.0
Merged-chr5-120775472-4	chr5	120774966	120775966	+	995.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145226, intron 1 of 15)	intron (NM_145226, intron 1 of 15)	2193.0	NM_145226	246727.0	Mm.204887	NM_145226	ENSMUSG00000032661	Oas3	Oasl10	2'-5' oligoadenylate synthetase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90312510-4	chr16	90312001	90313001	+	995.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-27998.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128037015-4	chr10	128036526	128037526	+	995.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282976, intron 2 of 7)	intron (NM_001282976, intron 2 of 7)	1680.0	NM_001113199	17938.0	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135628577-4	chr3	135628088	135629088	+	995.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 6 of 24)	intron (NM_008689, intron 6 of 24)	62959.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	1.0	31.0	29.5	15.5	29.5	22.5
Merged-chr1-155812275-2	chr1	155811775	155812775	+	995.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024945, intron 1 of 11)	intron (NM_001024945, intron 1 of 11)	624.0	NM_023268	104009.0	Mm.27035	NM_023268	ENSMUSG00000033684	Qsox1	1300003H02Rik|QSOX|Qscn6|SOx|b2b2673Clo	quiescin Q6 sulfhydryl oxidase 1	protein-coding	7.5	0.0	6.0	8.0	11.0	20.5
Merged-chr7-127275460-2	chr7	127274960	127275960	+	995.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-1401.0	NM_009266	20768.0	Mm.20294	NM_009266	ENSMUSG00000049091	Sephs2	Sps2|Ysg3	selenophosphate synthetase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52619695-4	chr13	52619236	52620236	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 3 of 13)	intron (NM_011518, intron 3 of 13)	22854.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-106791620-4	chr6	106791106	106792106	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021449, intron 4 of 10)	intron (NM_021449, intron 4 of 10)	8481.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22656777-4	chr11	22656306	22657306	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	144523.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77688962-4	chr9	77688463	77689463	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52231.0	NM_172925	244923.0	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	2.5	18.5	3.0	7.0	12.5	6.5
Merged-chr15-73140397-2	chr15	73139897	73140897	+	995.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 2 of 18)	intron (NM_153178, intron 2 of 18)	44550.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44588583-2	chr10	44588083	44589083	+	995.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-129835.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-119800268-2	chr12	119799768	119800768	+	995.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F|LINE|L1	-145694.0	NM_001294154	217951.0	Mm.387395	NM_001160385	ENSMUSG00000048004	Tmem196	Gm528	transmembrane protein 196	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80100259-2	chr10	80099759	80100759	+	995.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359637, intron 1 of 3)	intron (NM_001359637, intron 1 of 3)	928.0	NM_001359635	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-54919366-4	chr15	54918867	54919867	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285994, intron 2 of 25)	intron (NM_001285994, intron 2 of 25)	779.0	NM_015744	18606.0	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53653923-4	chr19	53653416	53654416	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23390.0	NM_001170847	73713.0	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51223297-2	chr3	51222797	51223797	+	995.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1150.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-94405051-4	chr2	94404558	94405558	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183106, intron 1 of 24)	intron (NM_183106, intron 1 of 24)	1631.0	NM_183106	74569.0	Mm.248504	NM_183106	ENSMUSG00000027194	Ttc17	9130020K17Rik|D2Bwg1005e	tetratricopeptide repeat domain 17	protein-coding	12.5	2.5	5.5	13.5	5.5	2.5
Merged-chr11-106752332-4	chr11	106751833	106752833	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033435, intron 2 of 6)	intron (NM_001033435, intron 2 of 6)	1107.0	NM_001033435	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87043534-2	chr6	87043034	87044034	+	995.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013528, intron 1 of 18)	intron (NM_013528, intron 1 of 18)	688.0	NM_013528	14583.0	Mm.19893	NM_013528	ENSMUSG00000029992	Gfpt1	2810423A18Rik|AI324119|AI449986|GFA|GFAT|GFAT1|GFAT1m|Gfpt	glutamine fructose-6-phosphate transaminase 1	protein-coding	31.5	62.5	27.5	32.0	59.5	27.5
Merged-chr11-116443581-2	chr11	116443081	116444081	+	995.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033267, intron 12 of 13)	intron (NM_001033267, intron 12 of 13)	9368.0	NR_003376	664849.0	Mm.258466	NR_003376		Gm7367	EG664849	1110014K08Rik pseudogene	pseudo	1.5	0.0	1.0	0.0	0.0	2.0
Merged-chr14-103016109-4	chr14	103015607	103016607	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 2 of 2)	intron (NR_045657, intron 2 of 2)	17696.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90475348-2	chr3	90474756	90475756	+	995.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026374)	promoter-TSS (NM_026374)	-945.0	NM_026374	67781.0	Mm.227258	NM_026374	ENSMUSG00000001016	Ilf2	6230405A16Rik|TEG-267|Tex261|Tex267	interleukin enhancer binding factor 2	protein-coding	0.0	8.5	4.0	0.0	0.0	3.0
Merged-chr6-5291720-4	chr6	5291219	5292219	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183308, intron 1 of 8)	intron (NM_183308, intron 1 of 8)	6654.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65773930-2	chr17	65773430	65774430	+	995.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1178.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0.0	0.5	1.0	2.0	3.0	2.5
Merged-chr1-191338941-2	chr1	191338441	191339441	+	995.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_025864, exon 3 of 8)	exon (NM_025864, exon 3 of 8)	12976.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26914012-2	chr2	26913512	26914512	+	995.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013721)	TTS (NM_013721)	-2409.0	NM_013678	20931.0	Mm.389260	NM_013678	ENSMUSG00000014873	Surf2	Surf-2	surfeit gene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-10531790-4	chr18	10531290	10532290	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083628, intron 18 of 32)	intron (NM_001083628, intron 18 of 32)	78562.0	NM_001081222	77805.0	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98589009-2	chr11	98588509	98589509	+	995.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Plat_L3|LINE|CR1	-1764.0	NM_025661	66612.0	Mm.180546	NM_025661	ENSMUSG00000038150	Ormdl3	2810011N17Rik|AI315223	ORM1-like 3 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-99182865-3	chr4	99182393	99183393	+	995.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11041.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	6.0	1.0	11.5	12.0	2.0	9.0
Merged-chr4-155847812-2	chr4	155847312	155848312	+	995.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010091, exon 1 of 15)	exon (NM_010091, exon 1 of 15)	410.0	NM_001356381	13542.0	Mm.3400	NM_010091	ENSMUSG00000029071	Dvl1	Dvl|mKIAA4029	dishevelled segment polarity protein 1	protein-coding	2.0	2.5	2.0	0.5	4.5	4.0
Merged-chr5-63967005-2	chr5	63966505	63967505	+	995.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145923, intron 1 of 6)	intron (NM_145923, intron 1 of 6)	1892.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	0.0	0.0	0.5	1.5	0.0	0.5
Merged-chr4-9243683-4	chr4	9243194	9244194	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-25599.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121711674-6	chr5	121711149	121712149	+	995.4815060000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009125)	promoter-TSS (NM_009125)	40.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	38.5	53.0	36.5	20.5	84.5	48.0
Merged-chr10-121516432-4	chr10	121515923	121516923	+	995.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40173.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0.0	1.0	0.0	1.0	0.0	0.5
Merged-chr9-113743421-4	chr9	113742900	113743900	+	995.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114347, intron 1 of 39)	intron (NM_001114347, intron 1 of 39)	1927.0	NM_001114347	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	2.5	2.5	6.5	0.0	8.5	10.0
Merged-chr17-69439358-4	chr17	69438865	69439865	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145192)	promoter-TSS (NM_001145192)	39.0	NM_001145192	320722.0	Mm.400254	NM_001145192	ENSMUSG00000091636	Akain1	A330050F15Rik	A kinase (PRKA) anchor inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126475315-8	chr7	126474813	126475813	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289541)	promoter-TSS (NM_001289541)	-183.0	NM_011363	20399.0	Mm.8538	NM_011363	ENSMUSG00000030733	Sh2b1	AI425885|C530001K22Rik|Irip|Psm|SH2-B|SH2-Bb|Sh2bpsm1|mKIAA1299	SH2B adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67490031-4	chr10	67489521	67490521	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47848.0	NM_010118	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3929780-4	chr4	3929282	3930282	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019969, intron 1 of 5)	intron (NM_019969, intron 1 of 5)	8623.0	NM_019969	56711.0	Mm.331467	NM_019969	ENSMUSG00000003282	Plag1	-	pleiomorphic adenoma gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-21808771-4	chr3	21808259	21809259	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-267893.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79374591-4	chr8	79374099	79375099	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	24869.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141676670-4	chr4	141676119	141677119	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	9097.0	NM_023544	69994.0	Mm.441022	NM_023544	ENSMUSG00000040715	Rsc1a1	1700027M01Rik|Rs1	regulatory solute carrier protein, family 1, member 1	protein-coding	79.0	78.5	113.0	46.5	70.5	84.0
Merged-chr3-9902554-4	chr3	9902047	9903047	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68868.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	4.0	1.5	7.5	0.5	2.5	6.5
Merged-chr2-163928633-4	chr2	163928148	163929148	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9965.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	26.5	61.5	39.0	84.0	164.5	121.0
Merged-chr13-52982891-4	chr13	52982364	52983364	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1825.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	0.0	3.5	0.0	0.5	0.5	0.0
Merged-chr3-89909228-4	chr3	89908748	89909748	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	3948.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	7.5	13.5	19.0	0.0	4.5	2.5
Merged-chr5-32112709-4	chr5	32112216	32113216	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23756.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	13.5	42.5	34.5	0.0	14.5	7.0
Merged-chr2-120425028-4	chr2	120424539	120425539	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172672, intron 6 of 23)	intron (NM_172672, intron 6 of 23)	-20923.0	NM_001110496	211499.0	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	7.0	13.0	22.0	3.5	9.5	17.5
Merged-chr2-131430628-4	chr2	131430130	131431130	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61232.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-84605932-4	chr7	84605453	84606453	+	995.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010176)	promoter-TSS (NM_010176)	-11.0	NM_010176	14085.0	Mm.3798	NM_010176	ENSMUSG00000030630	Fah	swst	fumarylacetoacetate hydrolase	protein-coding	4.5	3.5	0.0	0.0	4.5	3.5
Merged-chr13-9419385-4	chr13	9418886	9419886	+	995.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	142861.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180884488-4	chr1	180884020	180885020	+	995.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	-8588.0	NM_177099	320202.0	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56600939-4	chr19	56600440	56601440	+	995.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52679.0	NM_025811	66866.0	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119875067-4	chr11	119874582	119875582	+	995.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028898, intron 24 of 33)	intron (NM_028898, intron 24 of 33)	-7207.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36684318-4	chr1	36683814	36684814	+	995.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1131.0	NM_201365	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98741862-4	chr11	98741382	98742382	+	995.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313983)	promoter-TSS (NM_001313983)	97.0	NM_001313983	21833.0	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84031080-4	chr12	84030585	84031585	+	995.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7294.0	NM_134247	171282.0	Mm.482217	NM_134247	ENSMUSG00000052392	Acot4	B430212I04Rik|PTE-Ib|Pte1b|Pte2b	acyl-CoA thioesterase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-38106196-4	chr3	38105691	38106691	+	995.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	101928.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-40116616-4	chr1	40116126	40117126	+	995.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010555, intron 5 of 8)	intron (NM_010555, intron 5 of 8)	30533.0	NM_001360800	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60750703-4	chr18	60750234	60751234	+	995.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2069.0	NM_008306	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	9.0	0.0	6.0	9.0	9.5	3.0
Merged-chr9-46099331-4	chr9	46098837	46099837	+	995.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	86517.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-21725494-2	chr18	21724992	21725992	+	995.416626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-73124.0	NM_001081403	225266.0	Mm.436836	NM_001081403	ENSMUSG00000042514	Klhl14	6330403N15Rik|AI785250|printor	kelch-like 14	protein-coding	2.5	14.5	5.0	4.5	16.0	14.5
Merged-chr12-55642546-4	chr12	55642049	55643049	+	995.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003719, intron 36 of 39)	intron (NM_001003719, intron 36 of 39)	43632.0	NM_020287	56856.0	Mm.114886	NM_020287	ENSMUSG00000045440	Insm2	Mlt1	insulinoma-associated 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121369649-4	chr3	121369149	121370149	+	995.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-56892.0	NM_028044	71994.0	Mm.275555	NM_028044	ENSMUSG00000053931	Cnn3	1600014M03Rik|C85854|Calpo3	calponin 3, acidic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-72786031-3	chr2	72785527	72786527	+	995.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102349, intron 5 of 5)	intron (NR_102349, intron 5 of 5)	27690.0	NR_102348	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121596346-4	chr5	121595841	121596841	+	995.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2517.0	NM_001308450	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	9.5	31.0	11.5	3.0	22.5	19.0
Merged-chr16-5202809-4	chr16	5202318	5203318	+	995.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027804, intron 1 of 8)	intron (NR_027804, intron 1 of 8)	1194.0	NM_013796	27426.0	Mm.215641	NM_013796	ENSMUSG00000023143	Nagpa	AI596180|UCE	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-9717183-4	chr10	9716677	9717677	+	995.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32455.0	NR_038036	620417.0	Mm.378085	NR_038036	ENSMUSG00000111901	Gm6150	-	predicted gene 6150	ncRNA	8.5	15.5	18.5	3.0	3.5	4.0
Merged-chr6-136466123-4	chr6	136465637	136466637	+	995.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50568.0	NM_001201390	100502936.0	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	17.5	41.5	40.0	40.0	72.5	66.5
Merged-chr3-81149343-4	chr3	81148843	81149843	+	995.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357746, intron 3 of 6)	intron (NM_001357746, intron 3 of 6)	112927.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	4.0	5.0	4.5	10.5	3.5	4.5
Merged-chr15-27215920-4	chr15	27215408	27216408	+	995.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-250769.0	NM_020332	11732.0	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75490930-4	chr10	75490433	75491433	+	995.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	26448.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84685842-4	chr3	84685344	84686344	+	995.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177260, intron 3 of 6)	intron (NM_177260, intron 3 of 6)	19652.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67768513-4	chr18	67767941	67768941	+	995.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6435.0	NM_001360934	72124.0	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	1.0	5.0	4.5	0.0	7.0	10.5
Merged-chr8-125560992-4	chr8	125560494	125561494	+	995.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	8869.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	3.0	4.0	15.0	2.5	11.5	17.5
Merged-chr17-29034778-2	chr17	29034278	29035278	+	995.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_036613, intron 1 of 6)	B2_Mm1a|SINE|B2	2118.0	NR_036613	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	1.0	20.5	7.5	1.0	20.5	7.5
Merged-chr3-152463615-3	chr3	152463116	152464116	+	995.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001346655)	TTS (NM_001346655)	66932.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	0.0	0.0	2.0	1.0	1.0	6.0
Merged-chr8-90833122-4	chr8	90832575	90833575	+	995.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 1 of 39)	intron (NM_177224, intron 1 of 39)	4240.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	36.5	60.5	79.0	17.0	18.0	34.0
Merged-chr16-15862912-1	chr16	15862412	15863412	+	995.3333130000001	f0_balb.idr	exon (NM_029354, exon 1 of 3)	exon (NM_029354, exon 1 of 3)	457.0	NM_029354	72083.0	Mm.22351	NM_029354	ENSMUSG00000022671	Mzt2	2410018G20Rik|2610001E06Rik|Fam128|Fam128b	mitotic spindle organizing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111338702-4	chr8	111338205	111339205	+	995.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029005)	promoter-TSS (NM_029005)	-500.0	NM_029005	74568.0	Mm.207971	NM_029005	ENSMUSG00000012519	Mlkl	9130019I15Rik	mixed lineage kinase domain-like	protein-coding	10.5	18.0	10.5	32.5	37.0	14.5
Merged-chr17-37525650-4	chr17	37525141	37526141	+	995.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4316.0	NM_001005485	545205.0	Mm.383371	NM_001005485	ENSMUSG00000090675	Olfr111	-	olfactory receptor 111	protein-coding	42.0	55.0	45.5	9.0	21.5	10.5
Merged-chr8-70546619-4	chr8	70546192	70547192	+	995.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	7017.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	0.0	11.5	5.5	8.5	15.0	22.5
Merged-chr19-24281486-3	chr19	24280944	24281944	+	995.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008044)	promoter-TSS (NM_008044)	-858.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	2.5	12.0	4.5	3.0	1.5	10.5
Merged-chr8-70864917-4	chr8	70864457	70865457	+	995.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7949.0	NM_032397	84036.0	Mm.32074	NM_032397	ENSMUSG00000002908	Kcnn1	AI854248|KCa2.1|SK1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	protein-coding	0.0	9.0	3.0	6.0	4.0	5.0
Merged-chr9-121320670-4	chr9	121320165	121321165	+	995.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	23163.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-67609691-4	chr13	67609206	67610206	+	995.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163246)	promoter-TSS (NM_001163246)	1.0	NM_001163246	100416706.0	Mm.478045	NM_001163246	ENSMUSG00000058093	Zfp729b	AA987127	zinc finger protein 729b	protein-coding	27.0	49.5	59.0	15.5	33.5	17.0
Merged-chr14-33175332-4	chr14	33174841	33175841	+	995.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146022, intron 1 of 58)	intron (NM_001146022, intron 1 of 58)	9725.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34874642-4	chr6	34874116	34875116	+	995.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347101, exon 4 of 4)	exon (NM_001347101, exon 4 of 4)	3449.0	NM_199145	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84986737-4	chr15	84986249	84987249	+	995.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	1222.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85853489-4	chr1	85853003	85854003	+	995.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41007.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121400346-4	chr5	121399855	121400855	+	995.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172722, intron 1 of 23)	intron (NM_172722, intron 1 of 23)	2373.0	NM_172722	231713.0	Mm.33919	NM_172722	ENSMUSG00000042719	Naa25	4833422K13Rik|A630046C11|AI450868|C330023M02Rik|Mdm20	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding	26.0	50.0	36.5	5.5	54.5	41.0
Merged-chr13-83518414-3	chr13	83517827	83518827	+	995.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170537, intron 1 of 10)	(CA)n|Simple_repeat|Simple_repeat	-5329.0	NM_001347579	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	5.5	2.5	3.0	1.0	1.5	3.0
Merged-chr8-34689912-3	chr8	34689410	34690410	+	995.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER88|LTR|ERVL	-49594.0	NR_040706	330734.0	Mm.149998	NR_040706	ENSMUSG00000109819	B930018H19Rik	B930018H19	RIKEN cDNA B930018H19 gene	ncRNA	12.5	13.0	6.5	4.5	2.0	0.0
Merged-chr9-90009246-2	chr9	90008746	90009746	+	995.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357743, intron 20 of 26)	intron (NM_001357743, intron 20 of 26)	-45021.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78096261-4	chr10	78095772	78096772	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26904.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67977657-4	chr15	67977168	67978168	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	281188.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32814604-4	chr16	32814089	32815089	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4143.0	NM_001256309	381043.0	Mm.303864	NM_001256309	ENSMUSG00000094430	Smbd1	Gm1743|Gm933	somatomedin B domain containing 1	protein-coding	9.5	67.0	31.0	21.5	46.5	31.5
Merged-chr7-64341918-4	chr7	64341410	64342410	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	32185.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29526139-4	chr6	29525633	29526633	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012057)	promoter-TSS (NM_012057)	-492.0	NM_001311083	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103132206-4	chr11	103131715	103132715	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1124.0	NM_001130516	71059.0	Mm.273871	NM_027658	ENSMUSG00000043372	Hexim2	4933402L21Rik	hexamethylene bis-acetamide inducible 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84504504-4	chr3	84503991	84504991	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293801, intron 7 of 7)	intron (NM_001293801, intron 7 of 7)	-24052.0	NM_001033301	229474.0	Mm.331107	NM_001033301	ENSMUSG00000041842	Fhdc1	6330505N24Rik|Gm126	FH2 domain containing 1	protein-coding	8.5	7.0	7.0	4.0	1.0	1.5
Merged-chr19-10203965-4	chr19	10203491	10204491	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026919)	promoter-TSS (NM_026919)	-48.0	NM_001271614	14156.0	Mm.2952	NM_007999	ENSMUSG00000024742	Fen1	AW538437|FEN-1	flap structure specific endonuclease 1	protein-coding	85.5	184.5	163.0	79.5	178.0	165.5
Merged-chr1-183804018-4	chr1	183803500	183804500	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151520, intron 2 of 2)	intron (NR_151520, intron 2 of 2)	55023.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	37.0	67.0	53.5	44.5	48.5	45.5
Merged-chr3-88738819-4	chr3	88738335	88739335	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	21981.0	NR_028056	19769.0	Mm.4009	NM_009069	ENSMUSG00000028057	Rit1	RIBB|ROC1|Rit	Ras-like without CAAX 1	protein-coding	1.5	1.5	1.5	1.5	1.0	1.5
Merged-chr17-32738651-4	chr17	32738151	32739151	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	48896.0	NM_001346705	208292.0	Mm.38813	NM_172458	ENSMUSG00000024298	Zfp871	4732483N19|9030612M13Rik|AI118577|AI265322|mKIAA3006	zinc finger protein 871	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29906296-4	chr7	29905817	29906817	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011754)	promoter-TSS (NM_011754)	-192.0	NR_106128	102465770.0		NR_106128	ENSMUSG00000098873	Mir7668	Gm27961|mmu-mir-7668	microRNA 7668	ncRNA	86.0	260.5	179.0	73.5	132.0	137.0
Merged-chr6-87812641-4	chr6	87812129	87813129	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104478)	promoter-TSS (NR_104478)	-465.0	NR_104478	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107417419-4	chr11	107416928	107417928	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	53292.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45526944-4	chr7	45526473	45527473	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008654)	promoter-TSS (NM_008654)	643.0	NM_148927	69217.0	Mm.274158	NM_148927	ENSMUSG00000040428	Plekha4	2410005C22Rik|C88169|Pepp1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-5380354-7	chr5	5379938	5380938	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011074)	promoter-TSS (NM_011074)	-187.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-18893843-3	chr14	18893344	18894344	+	995.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360328)	promoter-TSS (NM_001360328)	-73.0	NM_144839	218793.0	Mm.23551	NM_144839	ENSMUSG00000058317	Ube2e2	BC016265	ubiquitin-conjugating enzyme E2E 2	protein-coding	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr4-137465344-4	chr4	137464818	137465818	+	995.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3485.0	NM_008305	15530.0	Mm.273662	NM_008305	ENSMUSG00000028763	Hspg2	AI852380|Pcn|Plc|per	perlecan (heparan sulfate proteoglycan 2)	protein-coding	18.5	17.0	26.0	2.0	11.0	15.5
Merged-chr12-33176144-4	chr12	33175655	33176655	+	995.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028139, intron 2 of 3)	intron (NM_028139, intron 2 of 3)	28469.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	1.5	16.0	7.5	2.0	4.5	5.5
Merged-chr4-126968261-4	chr4	126967772	126968772	+	995.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357201)	promoter-TSS (NM_001357201)	-349.0	NM_001114399	67785.0	Mm.165401	NM_001114399	ENSMUSG00000042446	Zmym4	6330503C17Rik|AI480785|AW493829|CDIR|D630001M21|MYM|Zfp262|Znf262|mKIAA0425	zinc finger, MYM-type 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97162477-4	chr15	97161952	97162952	+	995.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155278, intron 2 of 3)	intron (NR_155278, intron 2 of 3)	4792.0	NR_155278	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74897191-4	chr11	74896712	74897712	+	995.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177325)	promoter-TSS (NM_177325)	-132.0	NM_197943	97761.0	Mm.245894	NM_197943	ENSMUSG00000038351	Sgsm2	D630003G22Rik|R74628|Rutbc1|mKIAA0397	small G protein signaling modulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65200790-4	chr9	65200293	65201293	+	995.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-13897.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-44104309-4	chr14	44103811	44104811	+	995.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001012766)	TTS (NM_001012766)	1424.0	NM_017388	53876.0	Mm.327386	NM_017388		Ear3	Rnase3|mR3	eosinophil-associated, ribonuclease A family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-53219690-4	chr13	53219205	53220205	+	995.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013846, intron 1 of 8)	intron (NM_013846, intron 1 of 8)	66404.0	NM_013846	26564.0	Mm.342774	NM_013846	ENSMUSG00000021464	Ror2	Ntrkr2	receptor tyrosine kinase-like orphan receptor 2	protein-coding	5.0	22.5	12.5	3.0	7.5	9.5
Merged-chr12-55487498-10	chr12	55487032	55488032	+	995.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5115.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-82073561-4	chr13	82073071	82074071	+	995.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	290324.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102990902-4	chr2	102990405	102991405	+	995.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82608.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27919708-4	chr15	27919216	27920216	+	995.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	106132.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113120986-4	chr6	113120487	113121487	+	995.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_173005, exon 13 of 21)	exon (NM_173005, exon 13 of 21)	16052.0	NM_173005	72895.0	Mm.367159	NM_028385	ENSMUSG00000034269	Setd5	2900045N06Rik|C330007C20|C85544|mKIAA1757	SET domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112619235-4	chr12	112618754	112619754	+	995.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007421)	promoter-TSS (NM_007421)	-793.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-92478479-4	chr2	92477976	92478976	+	995.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	-17958.0	NM_145832	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3768836-4	chr4	3768324	3769324	+	995.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	MTA_Mm|LTR|ERVL-MaLR	53860.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	38.0	67.5	59.0	45.5	77.5	75.0
Merged-chr2-4593642-4	chr2	4593130	4594130	+	995.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 5 of 11)	intron (NM_001177844, intron 5 of 11)	33876.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-87025078-4	chr10	87024572	87025572	+	995.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17130.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113222226-4	chr12	113221753	113222753	+	995.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36350.0	NM_153776	69195.0	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	0.0	2.0	2.5	2.5	7.0	2.5
Merged-chr4-9770758-4	chr4	9770301	9771301	+	995.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030693, intron 1 of 3)	intron (NR_030693, intron 1 of 3)	216.0	NR_030693	320152.0	Mm.159946	NR_030693		4930412C18Rik	5730591J02Rik	RIKEN cDNA 4930412C18 gene	ncRNA	61.5	113.0	121.5	11.5	26.5	31.0
Merged-chr14-51894465-3	chr14	51893956	51894956	+	995.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001039676, exon 3 of 4)	exon (NM_001039676, exon 3 of 4)	846.0	NM_001039676	214922.0	Mm.281343	NM_001039676	ENSMUSG00000072572	Slc39a2	F730005G13Rik|Gm1789|Gm289|Zip2	solute carrier family 39 (zinc transporter), member 2	protein-coding	0.5	1.0	4.5	12.0	44.5	42.0
Merged-chr12-111470617-4	chr12	111470112	111471112	+	995.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15211.0	NM_001033248	212539.0	Mm.81916	NM_001033248	ENSMUSG00000010529	Gm266	-	predicted gene 266	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21630772-4	chr16	21630267	21631267	+	995.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 45 of 46)	intron (NM_001081366, intron 45 of 46)	63898.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120870253-4	chr7	120869726	120870726	+	995.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267710, intron 2 of 17)	intron (NM_001267710, intron 2 of 17)	19037.0	NM_001267711	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121606396-2	chr5	121605896	121606896	+	995.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_178799, intron 6 of 10)	intron (NM_178799, intron 6 of 10)	12542.0	NM_178799	338350.0	Mm.482918	NM_178799	ENSMUSG00000042647	Acad12	9330129D05Rik	acyl-Coenzyme A dehydrogenase family, member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26566339-2	chr2	26565839	26566839	+	995.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14717.0	NM_178444	353156.0	Mm.268933	NM_178444	ENSMUSG00000026921	Egfl7	VE-statin|Zneu1	EGF-like domain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33529925-4	chr16	33529417	33530417	+	995.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 1 of 11)	intron (NM_001083902, intron 1 of 11)	11322.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-102879714-4	chr9	102879216	102880216	+	995.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042607, intron 6 of 14)	intron (NM_001042607, intron 6 of 14)	44796.0	NM_001284258	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-7398465-4	chr17	7397993	7398993	+	995.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13188.0	NM_001142539	667055.0	Mm.327371	NM_001142539	ENSMUSG00000056133	Gm9992	-	predicted gene 9992	protein-coding	3.5	3.5	3.5	0.0	0.0	0.0
Merged-chr10-93689028-4	chr10	93688513	93689513	+	995.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021320, intron 3 of 9)	intron (NM_021320, intron 3 of 9)	-5691.0	NR_038017	100504069.0	Mm.391412	NR_038017	ENSMUSG00000085723	Gm15915	-	predicted gene 15915	ncRNA	100.5	177.0	105.0	56.0	131.0	100.0
Merged-chr7-66125601-4	chr7	66125125	66126125	+	995.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081163, exon 2 of 3)	exon (NM_001081163, exon 2 of 3)	16110.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3182575-2	chr11	3182096	3183096	+	995.125	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 4 of 32)	MTD|LTR|ERVL-MaLR	10867.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128135877-4	chr6	128135343	128136343	+	995.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175414, intron 1 of 8)	intron (NM_175414, intron 1 of 8)	7735.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105062618-4	chr5	105062117	105063117	+	995.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9056.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	0.0	7.5	0.0	0.0	0.0	1.5
Merged-chr2-168556276-4	chr2	168555781	168556781	+	995.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037177, intron 3 of 6)	intron (NM_001037177, intron 3 of 6)	34084.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98510667-4	chr15	98510155	98511155	+	995.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9179.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116397590-3	chr11	116397098	116398098	+	995.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027258, intron 1 of 18)	URR1B|DNA|hAT-Charlie	15434.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50157179-3	chr15	50156665	50157665	+	995.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	731884.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-13295712-3	chr1	13295224	13296224	+	995.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	Tigger5|DNA|TcMar-Tigger	76705.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	9.0	10.0	2.5	0.0	3.0	5.0
Merged-chr5-136202007-2	chr5	136201507	136202507	+	995.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3053.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121091179-4	chr11	121090654	121091654	+	995.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10015.0	NM_145373	209588.0	Mm.69553	NM_145373	ENSMUSG00000025165	Sectm1a	BC010462	secreted and transmembrane 1A	protein-coding	0.5	1.0	0.5	0.5	1.5	0.5
Merged-chr4-134758661-4	chr4	134758171	134759171	+	995.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145554, intron 2 of 8)	intron (NM_145554, intron 2 of 8)	9333.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-9059566-4	chr5	9059086	9060086	+	995.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41151.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-177261023-4	chr1	177260522	177261522	+	995.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12255.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	1.5	15.0	8.5	4.5	11.0	8.5
Merged-chr7-66134378-4	chr7	66133881	66134881	+	995.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081163, intron 2 of 2)	intron (NM_001081163, intron 2 of 2)	24866.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6967836-4	chr17	6967347	6968347	+	995.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6691.0	NM_147155	380608.0	Mm.371734	NM_147155	ENSMUSG00000052031	Tagap1	2610315E15Rik|AA415005|FKSG15	T cell activation GTPase activating protein 1	protein-coding	0.0	0.0	0.0	2.5	16.5	2.0
Merged-chr6-82753797-4	chr6	82753313	82754313	+	995.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 2 of 17)	intron (NM_013820, intron 2 of 17)	20641.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40397270-4	chr9	40396764	40397764	+	995.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 2 of 20)	intron (NM_001357617, intron 2 of 20)	-20847.0	NM_001357621	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	3.0	8.0	4.0	0.0	0.0	3.0
Merged-chr17-51288080-4	chr17	51287579	51288579	+	995.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037268, intron 3 of 4)	intron (NR_037268, intron 3 of 4)	10091.0	NR_037253	100526485.0		NR_037253	ENSMUSG00000105330	Mir669a-6	mmu-mir-669a-6	microRNA 669a-6	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-62229315-4	chr1	62228768	62229768	+	995.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081050, intron 13 of 22)	intron (NM_001081050, intron 13 of 22)	-93159.0	NR_151537	105243940.0		NR_151537		Pard3bos2	Gm12747	par-3 family cell polarity regulator beta, opposite strand 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145302447-5	chr6	145301985	145302985	+	995.080017	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	51933.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	77.0	262.0	159.0	80.5	199.5	162.5
Merged-chr11-96311668-4	chr11	96311167	96312167	+	995.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4757.0	NR_131758	75395.0	Mm.440014	NR_131758	ENSMUSG00000085645	Hoxb5os	0610040B09Rik|AV302770|Hoxb5/6as	homeobox B5 and homeobox B6, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123936823-4	chr9	123936329	123937329	+	995.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31863.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60892379-4	chr2	60891874	60892874	+	995.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-10936.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48234708-4	chr17	48234174	48235174	+	995.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347399, intron 1 of 2)	intron (NM_001347399, intron 1 of 2)	1935.0	NM_021406	58217.0	Mm.248352	NM_021406	ENSMUSG00000042265	Trem1	-	triggering receptor expressed on myeloid cells 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79398638-4	chr8	79398151	79399151	+	995.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 1 of 6)	CpG	817.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-150377469-4	chr1	150376978	150377978	+	995.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357579, intron 9 of 13)	L1_Mus2|LINE|L1	-15360.0	NM_133780	108989.0	Mm.174256	NM_133780	ENSMUSG00000006005	Tpr	2610029M07Rik|C77892	translocated promoter region, nuclear basket protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36648043-4	chr15	36647527	36648527	+	995.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39054.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158177885-2	chr2	158177385	158178385	+	995.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14123.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143460445-2	chr7	143459945	143460945	+	995.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001161624, exon 2 of 4)	exon (NM_001161624, exon 2 of 4)	605.0	NM_009876	12577.0	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101971608-1	chr5	101971108	101972108	+	995.0	f1_balb.idr	intron (NM_172882, intron 4 of 66)	intron (NM_172882, intron 4 of 66)	98313.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	24.0	6.5	5.5	17.0	10.0
Merged-chr4-123139610-4	chr4	123139116	123140116	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019489, intron 1 of 9)	intron (NM_019489, intron 1 of 9)	325.0	NM_019489	56031.0	Mm.126873	NM_019489	ENSMUSG00000028651	Ppie	2010010D16Rik|Cyp33	peptidylprolyl isomerase E (cyclophilin E)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70068529-2	chr14	70068029	70069029	+	995.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8916.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29487376-2	chr17	29486876	29487876	+	995.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3669.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	2.0	2.0	7.0	2.0	4.0	5.5
Merged-chr9-107685544-1	chr9	107685044	107686044	+	995.0	f1_c57bl6.idr	exon (NM_001311151, exon 12 of 18)	exon (NM_001311151, exon 12 of 18)	-5952.0	NM_008140	14685.0	Mm.284853	NM_008140	ENSMUSG00000034837	Gnat1	Gnat-1|Ird1|Ird2|Tralpha|irdc|irdr|transducin	guanine nucleotide binding protein, alpha transducing 1	protein-coding	0.0	6.5	0.0	0.0	3.0	0.0
Merged-chr11-19965085-2	chr11	19964585	19965585	+	995.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	40643.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	0.0	0.5	4.0	1.5	1.0	2.5
Merged-chr4-105557687-4	chr4	105557208	105558208	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F-int|LTR|ERVL-MaLR	400361.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	14.5	31.5	20.5	23.5	28.5	26.0
Merged-chr3-9801843-4	chr3	9801350	9802350	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195031, intron 1 of 8)	intron (NM_001195031, intron 1 of 8)	31829.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73935893-2	chr17	73935393	73936393	+	995.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011723, exon 5 of 36)	exon (NM_011723, exon 5 of 36)	14303.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98017033-2	chr11	98016533	98017533	+	995.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145121, intron 2 of 13)	intron (NM_145121, intron 2 of 13)	1339.0	NM_001159320	12295.0	Mm.41252	NM_031173	ENSMUSG00000020882	Cacnb1	CAB1|Cchb1|Cchlb1	calcium channel, voltage-dependent, beta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53351737-4	chr11	53351211	53352211	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033565, intron 1 of 20)	intron (NM_033565, intron 1 of 20)	944.0	NM_033565	93736.0	Mm.395281	NM_033565	ENSMUSG00000049470	Aff4	AF5Q31|Alf4|Laf4l|MCEF	AF4/FMR2 family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84408228-4	chr12	84407764	84408764	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028377)	promoter-TSS (NM_028377)	765.0	NM_007647	12499.0	Mm.10211	NM_007647	ENSMUSG00000021236	Entpd5	AI196558|AI987697|Cd39l4|ER-UDPase|NTPDase-5|NTPDase5|Pcph|mNTPase	ectonucleoside triphosphate diphosphohydrolase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94868798-4	chr13	94868306	94869306	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6821.0	NM_011021	18420.0	Mm.42051	NM_011021	ENSMUSG00000021685	Otp	-	orthopedia homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146150028-8	chr3	146149525	146150525	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005846)	promoter-TSS (NM_001005846)	-149.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99263929-3	chr10	99263484	99264484	+	995.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026268, exon 1 of 3)	exon (NM_026268, exon 1 of 3)	753.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86471567-2	chr1	86471067	86472067	+	995.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	45238.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136953889-4	chr5	136953394	136954394	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347504, intron 1 of 3)	intron (NM_001347504, intron 1 of 3)	619.0	NM_001347504	66437.0	Mm.25849	NM_025562	ENSMUSG00000019054	Fis1	2010003O14Rik|Ttc11	fission, mitochondrial 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81746054-2	chr15	81745554	81746554	+	995.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081016, intron 1 of 22)	intron (NM_001081016, intron 1 of 22)	1206.0	NM_001081016	20286.0	Mm.432075	NM_001081016	ENSMUSG00000022390	Zc3h7b	Gm627|Scrg3|Zc2h7b|mKIAA1031	zinc finger CCCH type containing 7B	protein-coding	0.0	0.0	4.5	0.0	0.0	2.5
Merged-chr8-126516829-2	chr8	126516329	126517329	+	995.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41764.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96558835-2	chr3	96558335	96559335	+	995.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023719, intron 1 of 7)	intron (NM_023719, intron 1 of 7)	878.0	NM_001009935	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	20.0	26.0	12.0	1.0	14.5	10.5
Merged-chr3-68981012-4	chr3	68980500	68981500	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026641, intron 5 of 19)	RSINE1|SINE|B4	23570.0	NM_026641	68259.0	Mm.389451	NM_026641	ENSMUSG00000027778	Ift80	4921524P20Rik|Wdr56|mKIAA1374	intraflagellar transport 80	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21768690-4	chr5	21768210	21769210	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009584, exon 8 of 17)	exon (NM_009584, exon 8 of 17)	16455.0	NM_009584	22791.0	Mm.266312	NM_009584	ENSMUSG00000029014	Dnajc2	AU020218|MIDA1|Zrf1|Zrf2	DnaJ heat shock protein family (Hsp40) member C2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-25472591-4	chr18	25472083	25473083	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	207165.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34448548-4	chr7	34448042	34449042	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58837.0	NM_025948	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	0.0	0.0	2.5	0.0	2.5	2.0
Merged-chr4-147401592-2	chr4	147401092	147402092	+	995.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	-151685.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54575822-2	chr14	54575327	54576327	+	995.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010590, intron 1 of 7)	CpG	1834.0	NM_010590	16475.0	Mm.100253	NM_010590	ENSMUSG00000022178	Ajuba	Jub	ajuba LIM protein	protein-coding	0.0	0.0	0.0	3.0	5.5	0.5
Merged-chr9-65195760-4	chr9	65195256	65196256	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18934.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30791138-2	chr2	30790638	30791638	+	995.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10599.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8690687-6	chr4	8690211	8691211	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001277149, exon 1 of 38)	5' UTR (NM_001277149, exon 1 of 38)	305.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122026423-1	chr2	122025923	122026923	+	995.0	f1_c57bl6.idr	Intergenic	Intergenic	-2157.0	NM_144545	78655.0	Mm.458184	NM_144545	ENSMUSG00000027236	Eif3j1	1810016I04Rik|2700079K05Rik|AA409117|AA409446|C78575|Eif3j|Eif3j-1|Eif3j-2|Eif3j2|Eif3s1|eIF-3-alpha-A|eIF-3-alpha-B|eIF3-alpha|eIF3-p35|eIF3j-A|eIF3j-B	eukaryotic translation initiation factor 3, subunit J1	protein-coding	2.5	7.0	2.0	4.0	3.0	5.0
Merged-chr12-51832513-3	chr12	51831970	51832970	+	995.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-2934.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	3.5	11.0	13.0	6.0	4.5	3.0
Merged-chr12-85912536-2	chr12	85912036	85913036	+	995.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 18 of 32)	intron (NM_001347395, intron 18 of 32)	87586.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55686820-1	chr19	55686320	55687320	+	995.0	f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	15384.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	20.5	13.0	15.0	12.5	21.5	9.5
Merged-chr4-129060130-4	chr4	129059632	129060632	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 1 of 8)	intron (NM_029219, intron 1 of 8)	1861.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144872184-3	chr3	144871686	144872686	+	995.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22884.0	NM_139148	229927.0	Mm.290600	NM_139148	ENSMUSG00000037033	Clca3b	Clca4	chloride channel accessory 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173977810-4	chr1	173977326	173978326	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008327, intron 1 of 6)	intron (NM_008327, intron 1 of 6)	5018.0	NM_008327	26388.0	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	6.0	4.5	2.5	2.0	10.5	6.0
Merged-chr14-120407024-4	chr14	120406513	120407513	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 8 of 8)	intron (NM_001360376, intron 8 of 8)	-71448.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106713866-1	chr1	106713366	106714366	+	995.0	f0_balb.idr	5' UTR (NM_177410, exon 1 of 1)	5' UTR (NM_177410, exon 1 of 1)	424.0	NM_009741	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101740179-4	chr13	101739672	101740672	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	28045.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62850585-3	chr4	62850050	62851050	+	995.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115024.0	NM_028326	72701.0	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26978708-4	chr8	26978221	26979221	+	994.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001101502, exon 2 of 2)	exon (NM_001101502, exon 2 of 2)	1385.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-124020067-4	chr9	124019577	124020577	+	994.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-1894.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100907495-4	chr7	100906992	100907992	+	994.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081116, intron 1 of 20)	intron (NM_001081116, intron 1 of 20)	24669.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118153169-4	chr11	118152688	118153688	+	994.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-23969.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78538148-4	chr9	78537694	78538694	+	994.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001276452, exon 11 of 11)	exon (NM_001276452, exon 11 of 11)	49851.0	NM_172773	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-23142091-4	chr19	23141603	23142603	+	994.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010638, exon 1 of 2)	exon (NM_010638, exon 1 of 2)	877.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-75190056-4	chr1	75189581	75190581	+	994.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003917, intron 4 of 15)	intron (NM_001003917, intron 4 of 15)	1929.0	NM_001003917	245860.0	Mm.238266	NM_001003917	ENSMUSG00000033124	Atg9a	AU019532|Apg9l1|Atg9|Atg9l1	autophagy related 9A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-68134822-3	chr15	68134331	68135331	+	994.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152182, intron 9 of 13)	intron (NR_152182, intron 9 of 13)	124025.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	12.5	10.0	22.0	15.5	18.0	15.0
Merged-chr5-123586010-4	chr5	123585477	123586477	+	994.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001359223)	TTS (NM_001359223)	-12962.0	NM_029929	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	7.5	13.0	7.5	3.5	7.5	2.5
Merged-chr8-68822910-4	chr8	68822408	68823408	+	994.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027590, intron 16 of 16)	intron (NM_027590, intron 16 of 16)	28979.0	NM_001293792	70885.0	Mm.252421	NM_027590	ENSMUSG00000031864	Ints10	4921521J11Rik|AI462004	integrator complex subunit 10	protein-coding	28.5	36.5	15.0	10.5	34.5	32.0
Merged-chr8-108721035-4	chr8	108720518	108721518	+	994.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	6374.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125685618-4	chr6	125685127	125686127	+	994.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 50 of 51)	intron (NM_011708, intron 50 of 51)	-4792.0	NM_153589	243634.0	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122811884-4	chr6	122811384	122812384	+	994.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8300.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61424447-4	chr9	61423942	61424942	+	994.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	52076.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-68957286-4	chr9	68956778	68957778	+	994.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013646, intron 1 of 10)	intron (NM_013646, intron 1 of 10)	191932.0	NR_033299	320440.0	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	0.0	0.0	1.5	2.5	0.0	1.5
Merged-chr13-34651568-4	chr13	34651061	34652061	+	994.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025831, intron 1 of 4)	intron (NM_025831, intron 1 of 4)	1120.0	NM_025831	66895.0	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-82401279-4	chr8	82400787	82401787	+	994.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254747, intron 1 of 7)	intron (NM_001254747, intron 1 of 7)	1299.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	36.0	120.0	73.5	43.0	116.0	76.5
Merged-chr7-97356449-2	chr7	97355949	97356949	+	994.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-15168.0	NM_199035	381903.0	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	32.5	35.0	38.5	19.5	54.5	34.0
Merged-chr7-109026288-2	chr7	109025788	109026788	+	994.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_021885, intron 6 of 11)	intron (NM_021885, intron 6 of 11)	15408.0	NM_021885	22141.0	Mm.439722	NM_021885	ENSMUSG00000031028	Tub	rd5|tub	tubby bipartite transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100411256-2	chr15	100410745	100411745	+	994.916626	f0_c57.idr|f1_c57bl6.idr	intron (NM_001356952, intron 2 of 15)	intron (NM_001356952, intron 2 of 15)	11810.0	NM_001146161	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	27.0	41.5	28.0	2.0	0.0	2.0
Merged-chr9-45086398-3	chr9	45085898	45086898	+	994.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005421, intron 3 of 10)	intron (NM_001005421, intron 3 of 10)	7215.0	NM_001005421	270152.0	Mm.190461	NM_001005421	ENSMUSG00000048534	Jaml	AMICA|Amica1|Crea7|Gm638	junction adhesion molecule like	protein-coding	0.0	0.0	0.5	1.5	4.5	3.5
Merged-chr14-17479119-3	chr14	17478622	17479622	+	994.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-181838.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84069523-3	chr3	84069027	84070027	+	994.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29366.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115155977-4	chr5	115155465	115156465	+	994.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175403, intron 1 of 4)	intron (NM_175403, intron 1 of 4)	2211.0	NM_175403	109154.0	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	1.5	0.0	10.5	0.5	17.5	4.5
Merged-chr10-84722266-4	chr10	84721776	84722776	+	994.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027423, intron 27 of 27)	intron (NM_027423, intron 27 of 27)	-33772.0	NM_001024918	71137.0	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr17-30215946-2	chr17	30215446	30216446	+	994.875	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027060, exon 11 of 11)	3' UTR (NM_027060, exon 11 of 11)	180234.0	NR_030688	623169.0	Mm.440508	NR_030688		Gm6402	EG623169	ribosomal protein S17 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-28843042-4	chr13	28842589	28843589	+	994.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045054, intron 2 of 7)	ORR1E|LTR|ERVL-MaLR	42333.0	NR_045054	72518.0	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-68175890-4	chr15	68175386	68176386	+	994.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152182, intron 6 of 13)	intron (NR_152182, intron 6 of 13)	82970.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110387100-4	chr5	110386585	110387585	+	994.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028596)	promoter-TSS (NM_028596)	42.0	NM_028596	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	27.5	20.5	14.5	1.0	16.0	13.5
Merged-chr15-83442651-4	chr15	83442169	83443169	+	994.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358643, intron 1 of 9)	intron (NM_001358643, intron 1 of 9)	5211.0	NM_001358644	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-57800024-4	chr8	57799521	57800521	+	994.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175032, intron 10 of 11)	intron (NM_175032, intron 10 of 11)	-146966.0	NM_144731	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	13.0	27.0	13.0	1.0	9.5	21.5
Merged-chr4-133633557-4	chr4	133633057	133634057	+	994.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001017968)	promoter-TSS (NM_001017968)	-128.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	6.0	2.0	6.5	2.5	14.0	21.0
Merged-chr19-5274312-4	chr19	5273823	5274823	+	994.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_030109, exon 21 of 21)	3' UTR (NM_030109, exon 21 of 21)	-1204.0	NM_153129	107975.0	Mm.234923	NM_153129	ENSMUSG00000024855	Pacs1	AI325977	phosphofurin acidic cluster sorting protein 1	protein-coding	49.0	82.5	69.0	51.0	84.5	68.5
Merged-chr6-39680810-4	chr6	39680302	39681302	+	994.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139294, intron 2 of 21)	Lx7|LINE|L1	44661.0	NM_139294	109880.0	Mm.245513	NM_139294	ENSMUSG00000002413	Braf	9930012E13Rik|AA120551|AA387315|AA473386|B-raf|Braf-2|Braf2|C230098H17|C87398|D6Ertd631e	Braf transforming gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71568449-4	chr8	71567951	71568951	+	994.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011977)	promoter-TSS (NM_011977)	-420.0	NM_011977	26457.0	Mm.38165	NM_011977	ENSMUSG00000031808	Slc27a1	FATP1|Fatp	solute carrier family 27 (fatty acid transporter), member 1	protein-coding	7.0	9.0	11.5	10.5	7.5	13.5
Merged-chr10-80664598-4	chr10	80664108	80665108	+	994.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_021462)	TTS (NM_021462)	-7537.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-89739642-4	chr13	89739128	89740128	+	994.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081249, intron 1 of 14)	CpG	2884.0	NM_001081249	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	6.5	6.5	7.5	0.0	6.0	2.5
Merged-chr4-40823773-4	chr4	40823279	40824279	+	994.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	26359.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3183374-2	chr11	3182858	3183858	+	994.833374	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 4 of 32)	B3|SINE|B2	10105.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78401416-2	chr17	78400916	78401916	+	994.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360407, intron 4 of 9)	MLT1B|LTR|ERVL-MaLR	16736.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-148444343-4	chr6	148443860	148444860	+	994.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347518)	promoter-TSS (NM_001347518)	-8.0	NM_001347518	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-63239985-4	chr13	63239489	63240489	+	994.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110521)	promoter-TSS (NR_110521)	-40.0	NR_110520	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	8.5	15.5	3.5	1.0	13.0	2.5
Merged-chr3-65188480-4	chr3	65187968	65188968	+	994.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289450, intron 1 of 14)	intron (NM_001289450, intron 1 of 14)	365.0	NM_001289450	16497.0	Mm.316402	NM_010597	ENSMUSG00000027827	Kcnab1	Akr8a8|Kvbeta1.1|mKv(beta)1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11010036-2	chr16	11009536	11010536	+	994.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NR_040518, intron 1 of 2)	RSINE1|SINE|B4	1138.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112972481-4	chr5	112971983	112972983	+	994.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 3 of 20)	intron (NM_001285806, intron 3 of 20)	43055.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-43398034-4	chr16	43397527	43398527	+	994.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	22169.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95230831-4	chr3	95230332	95231332	+	994.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038708, intron 1 of 4)	intron (NM_001038708, intron 1 of 4)	1889.0	NM_001038708	57912.0	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25129020-4	chr7	25128500	25129500	+	994.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163556, intron 1 of 13)	B1_Mus2|SINE|Alu	3460.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-92844798-4	chr13	92844259	92845259	+	994.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162945)	promoter-TSS (NM_001162945)	-28.0	NM_001162945	382793.0	Mm.296770	NM_001162945	ENSMUSG00000021704	Mtx3	4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514	metaxin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126738108-4	chr7	126737616	126738616	+	994.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-21510.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33966973-4	chr16	33966490	33967490	+	994.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009471)	promoter-TSS (NM_009471)	48.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4098586-4	chr19	4098066	4099066	+	994.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026373, exon 4 of 4)	3' UTR (NM_026373, exon 4 of 4)	1215.0	NM_026373	52004.0	Mm.29609	NM_026373	ENSMUSG00000024856	Cdk2ap2	5830466O21Rik|D19Ertd144e|Doc-1r	CDK2-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160091276-4	chr2	160090774	160091774	+	994.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74621.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	4.0	7.0	3.0	2.5	4.0	0.5
Merged-chr17-63370099-4	chr17	63369598	63370598	+	994.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 5 of 8)	intron (NM_015794, intron 5 of 8)	-57125.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70696696-4	chr8	70696205	70697205	+	994.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1034.0	NM_010592	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	68.0	106.0	66.0	78.0	168.0	70.0
Merged-chr11-119392213-4	chr11	119391727	119392727	+	994.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1755.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46869535-4	chr8	46869028	46870028	+	994.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117359.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107747540-4	chr9	107747033	107748033	+	994.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153190, intron 16 of 23)	intron (NR_153190, intron 16 of 23)	23469.0	NM_148930	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31769641-8	chr2	31769180	31770180	+	994.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	9507.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25449558-4	chr10	25449081	25450081	+	994.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 3 of 16)	intron (NM_001358754, intron 3 of 16)	41213.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35049767-4	chr17	35049274	35050274	+	994.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033444)	promoter-TSS (NM_033444)	-469.0	NM_033444	114584.0	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	62.0	334.0	200.5	71.0	311.5	162.0
Merged-chr5-5186291-4	chr5	5185818	5186818	+	994.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 5 of 14)	intron (NM_011074, intron 5 of 14)	79750.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	46.5	37.0	39.5	16.5	47.5	32.5
Merged-chr18-44827860-3	chr18	44827350	44828350	+	994.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163013)	promoter-TSS (NM_001163013)	-815.0	NM_001163013	240255.0	Mm.244482	NM_001163013	ENSMUSG00000034653	Ythdc2	3010002F02Rik|BC037178	YTH domain containing 2	protein-coding	57.5	210.0	131.0	41.0	107.0	100.0
Merged-chr5-74260562-3	chr5	74260070	74261070	+	994.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114660, intron 5 of 8)	intron (NM_001114660, intron 5 of 8)	65244.0	NM_026878	68939.0	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	0.0	0.0	0.0	0.5	4.5	1.5
Merged-chr5-43770762-4	chr5	43770289	43771289	+	994.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159963, exon 3 of 11)	exon (NM_001159963, exon 3 of 11)	11360.0	NM_001159963	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	2.5	9.5	5.0	1.0	3.5	4.0
Merged-chr1-182953859-4	chr1	182953350	182954350	+	994.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016928)	promoter-TSS (NM_016928)	-938.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0.0	6.5	5.0	9.5	1.0	3.5
Merged-chr1-191879668-2	chr1	191879168	191880168	+	994.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-27113.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	5.5	12.5	20.0	7.0	22.5	36.0
Merged-chr4-63205721-4	chr4	63205207	63206207	+	994.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9705.0	NM_025685	373864.0	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64023892-4	chr15	64023395	64024395	+	994.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	-25829.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143537255-4	chr5	143536756	143537756	+	994.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9225.0	NM_001347530	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	2.0	0.0	0.0	2.0	0.0	0.0
Merged-chr19-9082690-4	chr19	9082181	9083181	+	994.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011681)	TTS (NM_011681)	5275.0	NM_011681	22287.0	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39140732-4	chr18	39140234	39141234	+	994.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 10 of 21)	intron (NM_001361073, intron 10 of 21)	147589.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0.0	0.0	0.0	0.0	1.0	0.5
Merged-chr18-80464916-4	chr18	80464427	80465427	+	994.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 1 of 12)	RLTR12B|LTR|ERVK	4740.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-116984043-4	chr2	116983556	116984556	+	994.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83904.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40852680-4	chr4	40852187	40853187	+	994.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	1850.0	NM_022305	14595.0	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	3.0	10.5	1.5	5.5	7.0	4.5
Merged-chr19-61084259-4	chr19	61083764	61084764	+	994.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 12 of 15)	intron (NM_018869, intron 12 of 15)	56576.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	9.5	19.5	26.0	3.5	18.5	18.5
Merged-chr10-115249873-2	chr10	115249330	115250330	+	994.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_025706, intron 1 of 16)	intron (NM_025706, intron 1 of 16)	1663.0	NM_025706	66687.0	Mm.22252	NM_025706	ENSMUSG00000020130	Tbc1d15	4432405K22Rik|AU022358|AU023730|AW557774|Ly6dl|Rab7-GAP	TBC1 domain family, member 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-30954003-4	chr11	30953457	30954457	+	994.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023906)	promoter-TSS (NM_023906)	174.0	NM_025745	66753.0	Mm.294641	NM_025745	ENSMUSG00000020311	Erlec1	4933407N01Rik	endoplasmic reticulum lectin 1	protein-coding	1.0	36.5	23.5	6.5	19.0	20.5
Merged-chr2-174329191-5	chr2	174328687	174329687	+	994.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077510)	promoter-TSS (NM_001077510)	-883.0	NM_201616	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10290570-7	chr19	10290045	10291045	+	994.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	14332.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49783546-4	chr16	49783075	49784075	+	994.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72079.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-52624856-4	chr12	52624356	52625356	+	994.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-22534.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	11.0	24.5	9.0	3.5	1.5	4.0
Merged-chr5-66137424-4	chr5	66136959	66137959	+	994.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	13519.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	28.5	117.5	51.0	46.0	72.5	78.0
Merged-chr1-173942530-4	chr1	173942050	173943050	+	994.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302651)	promoter-TSS (NM_001302651)	-58.0	NM_001302651	15950.0	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Ifi203a|Ifi203b|Mndal	interferon activated gene 203	protein-coding	33.5	72.5	49.5	23.5	33.0	44.0
Merged-chr9-123941553-4	chr9	123941063	123942063	+	994.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27129.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-97561170-4	chr13	97560669	97561669	+	994.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046157, intron 1 of 2)	intron (NR_046157, intron 1 of 2)	1169.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105993399-4	chr1	105992912	105993912	+	994.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122675, intron 1 of 12)	intron (NM_001122675, intron 1 of 12)	3006.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	27.0	155.0	74.5	26.0	153.5	74.0
Merged-chr8-95715882-4	chr8	95715405	95716405	+	994.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001035123)	promoter-TSS (NM_001035123)	-8.0	NM_001035123	66083.0	Mm.261321	NM_001035123	ENSMUSG00000031671	Setd6	0610039J04Rik|3110004G14Rik|AI413388|C76402	SET domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65357130-4	chr9	65356558	65357558	+	994.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016688, intron 4 of 4)	B1_Mus2|SINE|Alu	-4002.0	NM_001111145	208080.0	Mm.291862	NM_001111145	ENSMUSG00000086228	Ubap1l	Gm514	ubiquitin-associated protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105802015-6	chr3	105801518	105802518	+	994.694458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145541)	promoter-TSS (NM_145541)	-637.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	20.0	39.5	47.5	15.5	50.0	31.0
Merged-chr14-30713933-4	chr14	30713437	30714437	+	994.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019460)	promoter-TSS (NM_019460)	-912.0	NM_019460	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80786939-4	chr7	80786432	80787432	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	16399.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	20.0	62.5	33.5	9.5	70.0	29.5
Merged-chr17-26677296-4	chr17	26676783	26677783	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025272, intron 1 of 3)	intron (NM_025272, intron 1 of 3)	887.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-149947833-4	chr1	149947339	149948339	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	13451.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-17660136-4	chr14	17659639	17660639	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113417)	promoter-TSS (NM_001113417)	-821.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95845275-4	chr9	95844779	95845779	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033210)	promoter-TSS (NM_001033210)	0.0	NM_001033210	102502.0	Mm.11869	NM_001033210	ENSMUSG00000049493	Pls1	AI427122	plastin 1 (I-isoform)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20831070-6	chr11	20830555	20831555	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173752)	promoter-TSS (NM_173752)	53.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	3.0	7.5	0.0	0.0	3.0	1.5
Merged-chr5-112991405-4	chr5	112990899	112991899	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	24139.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53462238-2	chr15	53461738	53462738	+	994.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	-116055.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34334535-4	chr5	34334033	34335033	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1717.0	NM_011278	19822.0	Mm.21281	NM_011278	ENSMUSG00000029110	Rnf4	AU018689|Gtrgeo8|SNURF	ring finger protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49700088-4	chr16	49699583	49700583	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028680, intron 1 of 10)	intron (NM_028680, intron 1 of 10)	789.0	NM_028680	73916.0	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-121041109-4	chr4	121040591	121041591	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007741, intron 2 of 31)	intron (NM_007741, intron 2 of 31)	1525.0	NM_007741	12840.0	Mm.269384	NM_007741	ENSMUSG00000028626	Col9a2	AI427499|Col9a-2	collagen, type IX, alpha 2	protein-coding	0.0	0.0	1.5	0.0	0.0	1.0
Merged-chr10-61121957-4	chr10	61121458	61122458	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009163, intron 3 of 14)	(GTTTG)n|Simple_repeat|Simple_repeat	25726.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153275156-4	chr2	153274648	153275648	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-16268.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54758177-4	chr11	54757684	54758684	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178626, intron 1 of 5)	MER57C2|LTR|ERV1	29519.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76590024-4	chr11	76589502	76590502	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12263.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67648390-4	chr10	67647913	67648913	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76454.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26486812-2	chr2	26486312	26487312	+	994.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 2 of 33)	intron (NM_008714, intron 2 of 33)	-16693.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133211157-2	chr4	133210657	133211657	+	994.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_008154, exon 2 of 2)	exon (NM_008154, exon 2 of 2)	1379.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	5.0	0.0	2.5	1.0	0.5	1.5
Merged-chr16-13820071-2	chr16	13819571	13820571	+	994.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346109, intron 1 of 7)	intron (NM_001346109, intron 1 of 7)	820.0	NM_001346111	18203.0	Mm.380410	NM_010946	ENSMUSG00000022681	Ntan1	PNAA|PNAD	N-terminal Asn amidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-195131624-4	chr1	195131094	195132094	+	994.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355061)	promoter-TSS (NM_001355061)	-24.0	NM_001355061	12946.0	Mm.301652	NM_013499	ENSMUSG00000016481	Cr1l	Crry|Mcp|mCRY	complement component (3b/4b) receptor 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6330848-4	chr2	6330365	6331365	+	994.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080548, intron 1 of 14)	intron (NM_001080548, intron 1 of 14)	8108.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107922579-2	chr4	107922079	107923079	+	994.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_009949, intron 1 of 4)	intron (NM_009949, intron 1 of 4)	1010.0	NM_009949	12896.0	Mm.307620	NM_009949	ENSMUSG00000028607	Cpt2	AI323697|CPTII	carnitine palmitoyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57791543-4	chr10	57791026	57792026	+	994.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3018.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17600176-4	chr17	17599668	17600668	+	994.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	24321.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	19.5	71.0	29.5	11.0	35.5	33.0
Merged-chr2-6469369-4	chr2	6468847	6469847	+	994.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116611.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139212553-4	chr7	139212052	139213052	+	994.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027164)	promoter-TSS (NM_027164)	-436.0	NM_027164	76612.0	Mm.17757	NM_027164	ENSMUSG00000015980	Lrrc27	1700071K18Rik|2310044E02Rik	leucine rich repeat containing 27	protein-coding	120.0	237.0	216.5	191.0	306.0	227.0
Merged-chr11-119268466-4	chr11	119267945	119268945	+	994.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008064, intron 1 of 19)	intron (NM_008064, intron 1 of 19)	482.0	NM_008064	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	154.5	324.5	257.0	175.0	360.5	305.0
Merged-chr14-34674731-4	chr14	34674218	34675218	+	994.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004436, intron 1 of 18)	CpG	790.0	NM_001301330	218914.0	Mm.27957	NM_001004436	ENSMUSG00000041408	Wapl	A530089A20Rik|BC037674|DIF-2|FOE|Wapal	WAPL cohesin release factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96661031-4	chr3	96660497	96661497	+	994.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302471, intron 27 of 29)	intron (NM_001302471, intron 27 of 29)	-9134.0	NM_001356539	213121.0	Mm.39732	NM_001081139	ENSMUSG00000038354	Ankrd35	4732436F15Rik	ankyrin repeat domain 35	protein-coding	21.5	79.0	68.5	46.0	109.0	76.5
Merged-chr12-57464882-3	chr12	57464391	57465391	+	994.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81220.0	NM_008259	15375.0	Mm.4578	NM_008259	ENSMUSG00000035451	Foxa1	Hnf-3a|Hnf3a|Tcf-3a|Tcf3a	forkhead box A1	protein-coding	0.0	6.0	8.0	8.0	8.5	7.0
Merged-chr5-98031156-4	chr5	98030660	98031660	+	994.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133738)	promoter-TSS (NM_133738)	-198.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	11.5	0.0	5.5	5.0	4.5	2.0
Merged-chr19-5366589-5	chr19	5366130	5367130	+	994.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027236)	promoter-TSS (NM_027236)	-183.0	NM_027236	69860.0	Mm.299167	NM_027236	ENSMUSG00000024841	Eif1ad	2010003J03Rik|AI131644	eukaryotic translation initiation factor 1A domain containing	protein-coding	6.0	34.5	14.5	3.0	20.0	12.5
Merged-chr2-151930670-2	chr2	151930170	151931170	+	994.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_009641, intron 4 of 8)	intron (NM_009641, intron 4 of 8)	19463.0	NM_009641	11602.0	Mm.189536	NM_009641	ENSMUSG00000027460	Angpt4	ANG-3|ANG-4|Agpt4|Ang3	angiopoietin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71382796-4	chr8	71382298	71383298	+	994.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010150)	promoter-TSS (NM_010150)	-846.0	NM_010150	13864.0	Mm.28989	NM_010150	ENSMUSG00000002393	Nr2f6	AV090102|COUP-TF3|EAR2|Erbal2	nuclear receptor subfamily 2, group F, member 6	protein-coding	12.5	26.0	28.0	14.0	18.0	18.5
Merged-chr7-41500550-4	chr7	41500093	41501093	+	994.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033530)	promoter-TSS (NM_001033530)	-703.0	NM_001033530	101835.0	Mm.370336	NM_001033530	ENSMUSG00000074166	AW146154	AI451288	expressed sequence AW146154	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88454889-4	chr3	88454379	88455379	+	994.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163489, intron 1 of 14)	intron (NM_001163489, intron 1 of 14)	882.0	NM_013658	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27675815-4	chr15	27675313	27676313	+	994.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	5729.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75704209-4	chr15	75703702	75704702	+	994.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008164)	promoter-TSS (NM_008164)	-86.0	NM_001163465	14787.0	Mm.57052	NM_008164	ENSMUSG00000022580	Rhpn1	BB023497|Grbp|Rhophilin|mKIAA1929	rhophilin, Rho GTPase binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36939321-4	chr16	36938810	36939810	+	994.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008225, intron 3 of 13)	RLTR40|LTR|ERVK	4327.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59636887-4	chr10	59636378	59637378	+	994.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20186.0	NM_001033259	215999.0	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101840125-4	chr7	101839628	101840628	+	994.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001303239, exon 6 of 6)	3' UTR (NM_001303239, exon 6 of 6)	-1902.0	NM_010567	16332.0	Mm.476000	NM_010567	ENSMUSG00000032737	Inppl1	51C|SHIP2	inositol polyphosphate phosphatase-like 1	protein-coding	0.5	0.5	6.0	0.0	16.0	11.5
Merged-chr4-139193765-5	chr4	139193155	139194155	+	994.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271405)	promoter-TSS (NM_001271405)	-456.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	81.5	209.0	190.5	71.5	162.0	144.0
Merged-chr1-142468481-3	chr1	142467974	142468974	+	994.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1172223.0	NM_020025	26878.0	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-89746874-3	chr14	89746365	89747365	+	994.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-149359.0	NR_002862	328451.0	Mm.320571	NR_002862		Gm5088	EG328451|Pabpc4l	poly(A)-binding protein, cytoplasmic pseudogene	pseudo	4.0	14.0	3.5	0.5	9.0	4.5
Merged-chr16-91376839-3	chr16	91376340	91377340	+	994.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 1 of 7)	intron (NM_001347258, intron 1 of 7)	4057.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84199107-4	chr1	84198606	84199606	+	994.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003948, intron 1 of 2)	intron (NM_001003948, intron 1 of 2)	19855.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128488673-4	chr8	128488161	128489161	+	994.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358959, intron 12 of 16)	intron (NM_001358959, intron 12 of 16)	129420.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	14.5	35.0	24.0	10.5	55.0	26.0
Merged-chr11-36942156-4	chr11	36941653	36942653	+	994.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011856, intron 1 of 28)	intron (NM_011856, intron 1 of 28)	2088.0	NM_001290702	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	8.0	33.0	24.0	10.0	16.0	12.0
Merged-chr7-63755730-4	chr7	63755230	63756230	+	994.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130880, intron 13 of 13)	intron (NM_130880, intron 13 of 13)	-161127.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144123648-4	chr3	144123184	144124184	+	994.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78648.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62060153-4	chr15	62059650	62060650	+	994.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	20893.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30407396-4	chr2	30406893	30407893	+	994.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007760, intron 6 of 13)	intron (NM_007760, intron 6 of 13)	8355.0	NM_007760	12908.0	Mm.20396	NM_007760	ENSMUSG00000026853	Crat	AW107812|CARAT	carnitine acetyltransferase	protein-coding	13.5	0.5	5.5	2.0	4.0	0.0
Merged-chr12-3344919-4	chr12	3344418	3345418	+	994.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20214.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84074189-4	chr17	84073709	84074709	+	994.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4451.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75655089-5	chr11	75654657	75655657	+	994.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080775)	promoter-TSS (NM_001080775)	-858.0	NM_001080775	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54611125-7	chr13	54610665	54611665	+	994.5238039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347512, exon 1 of 6)	exon (NM_001347512, exon 1 of 6)	208.0	NM_028870	74325.0	Mm.290026	NM_028870	ENSMUSG00000047547	Cltb	2310046E19Rik|lcb	clathrin, light polypeptide (Lcb)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-36841069-4	chr3	36840510	36841510	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22096.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10981140-2	chr16	10980640	10981640	+	994.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	11981.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-151292440-2	chr5	151291940	151292940	+	994.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-76235.0	NR_045700	625175.0	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103504267-2	chr2	103503767	103504767	+	994.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19114.0	NM_009804	12359.0	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	6.0	24.5	12.5	11.0	15.5	21.5
Merged-chr10-67748808-4	chr10	67748299	67749299	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	163863.0	NM_178679	216049.0	Mm.268346	NM_178679	ENSMUSG00000037855	Zfp365	AI839779|AV340892|DBZ|Su48|Znf365|talanin	zinc finger protein 365	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-137410263-2	chr6	137409763	137410763	+	994.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164403)	promoter-TSS (NM_001164403)	-458.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117386268-2	chr8	117385768	117386768	+	994.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 3 of 20)	intron (NM_028941, intron 3 of 20)	37098.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95945606-4	chr16	95945110	95946110	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16533.0	NR_040484	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34313576-4	chr17	34313052	34314052	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010382, intron 2 of 5)	intron (NM_010382, intron 2 of 5)	7685.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	0.0	0.0	1.0	0.0	5.0	1.5
Merged-chr17-31088925-4	chr17	31088451	31089451	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	31257.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	19.0	34.0	23.5	8.5	37.0	23.0
Merged-chr7-27472911-4	chr7	27472422	27473422	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133210)	promoter-TSS (NM_133210)	-918.0	NM_133210	170742.0	Mm.200120	NM_133210	ENSMUSG00000055200	Sertad3	AW124805|D1Mgi51|Rbt1|Sei3	SERTA domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115626298-2	chr11	115625855	115626855	+	994.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252395, intron 1 of 7)	intron (NM_001252395, intron 1 of 7)	1940.0	NM_001252394	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	3.5	7.5	4.0	1.0	6.0	6.0
Merged-chr17-28410816-2	chr17	28410316	28411316	+	994.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 7 of 10)	intron (NM_010220, intron 7 of 10)	-45600.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	0.0	1.5	0.5	0.0	2.0	0.0
Merged-chr8-111526785-4	chr8	111526272	111527272	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4665.0	NM_176923	319481.0	Mm.247294	NM_176923	ENSMUSG00000031959	Wdr59	5430401O09Rik|Cdw12	WD repeat domain 59	protein-coding	16.0	12.0	26.0	0.0	4.5	1.0
Merged-chr1-37487159-4	chr1	37486672	37487672	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_024017, exon 1 of 1)	non-coding (NR_024017, exon 1 of 1)	1433.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115634936-2	chr11	115634436	115635436	+	994.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-6641.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19360088-4	chr7	19359584	19360584	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145822)	promoter-TSS (NM_145822)	-601.0	NM_145822	70333.0	Mm.171370	NM_145822	ENSMUSG00000047649	Cd3eap	1190028F09|2610103M17Rik|ASE-1|Ase1|CAST|PAF49	CD3E antigen, epsilon polypeptide associated protein	protein-coding	7.5	41.5	10.0	5.0	28.5	19.5
Merged-chr7-101357024-4	chr7	101356529	101357529	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	8960.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	8.0	0.5	4.0	1.0	2.0	9.5
Merged-chr4-126017865-4	chr4	126017364	126018364	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6795.0	NR_045561	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	9.0	16.0	6.0	5.0	22.0	11.5
Merged-chr9-88437659-2	chr9	88437159	88438159	+	994.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359958, intron 1 of 28)	intron (NM_001359958, intron 1 of 28)	1292.0	NM_001359958	244962.0	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4503295-2	chr2	4502795	4503795	+	994.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 5 of 23)	B3A|SINE|B2	-56459.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106902107-2	chr8	106901607	106902607	+	994.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358982, intron 5 of 16)	intron (NM_001358982, intron 5 of 16)	8467.0	NM_001358982	21771.0	Mm.10665	NM_011574	ENSMUSG00000041438	Utp4	Cirh1a|Cirhin|Naic|Teg-292|Tex292	UTP4 small subunit processome component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-42447502-2	chr17	42447002	42448002	+	994.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355270, intron 2 of 2)	intron (NM_001355270, intron 2 of 2)	130902.0	NM_001355270	627626.0	Mm.390999	NM_028474	ENSMUSG00000042256	Ptchd4	3110082D06Rik|Gm321	patched domain containing 4	protein-coding	3.5	0.0	1.0	7.0	0.0	0.0
Merged-chr1-138130347-2	chr1	138129847	138130847	+	994.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	44779.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150861897-2	chr2	150861397	150862397	+	994.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 1 of 12)	intron (NR_151505, intron 1 of 12)	-19327.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123399130-4	chr5	123398629	123399629	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133917, intron 1 of 16)	B2_Mm2|SINE|B2	4331.0	NM_177582	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121747166-4	chr11	121746667	121747667	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44740.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44460295-4	chr10	44459802	44460802	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1554.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36814725-4	chr5	36814226	36815226	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008550, intron 11 of 18)	intron (NM_008550, intron 11 of 18)	15923.0	NM_008550	17160.0	Mm.761	NM_008550	ENSMUSG00000029119	Man2b2	mKIAA0935	mannosidase 2, alpha B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94602635-3	chr8	94602211	94603211	+	994.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028221)	promoter-TSS (NM_028221)	770.0	NM_026274	67610.0	Mm.109074	NM_026274	ENSMUSG00000050079	Rspry1	4930470D19Rik|AI608258	ring finger and SPRY domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47011153-4	chr17	47010651	47011651	+	994.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177374)	promoter-TSS (NM_001177374)	-619.0	NM_001177374	224826.0	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38352147-4	chr6	38351625	38352625	+	994.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028864, intron 1 of 8)	intron (NM_028864, intron 1 of 8)	2478.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92332624-4	chr5	92332150	92333150	+	994.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 1 of 10)	intron (NM_001310664, intron 1 of 10)	823.0	NM_001310664	109979.0	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	8.5	27.0	14.5	0.0	0.0	0.5
Merged-chr18-76929437-4	chr18	76928928	76929928	+	994.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025409)	promoter-TSS (NM_025409)	-599.0	NM_025409	66191.0	Mm.28593	NM_025409	ENSMUSG00000090000	Ier3ip1	1110057H19Rik|AI644142|AL022842|AL022863|AV026606	immediate early response 3 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33691509-4	chr16	33691003	33692003	+	994.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 1 of 14)	intron (NM_175256, intron 1 of 14)	7037.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-148325142-4	chr3	148324627	148325627	+	994.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	629508.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	8.5	20.5	14.5	18.5	14.0	8.5
Merged-chr15-25531114-4	chr15	25530608	25531608	+	994.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91442.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65690823-7	chr18	65690330	65691330	+	994.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7438.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	50.0	101.5	76.0	41.0	123.5	110.5
Merged-chr5-67327433-4	chr5	67326934	67327934	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178651, intron 4 of 17)	intron (NM_178651, intron 4 of 17)	20479.0	NM_001310629	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	11.5	50.0	25.0	23.5	38.5	37.0
Merged-chr16-20316978-4	chr16	20316463	20317463	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183158, intron 2 of 8)	intron (NM_183158, intron 2 of 8)	8441.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120489475-4	chr11	120488984	120489984	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027204)	TTS (NM_027204)	-2353.0	NM_013770	27376.0	Mm.3991	NM_013770	ENSMUSG00000025792	Slc25a10	Dic	solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70816900-4	chr8	70816371	70817371	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008353, intron 11 of 15)	CpG	8422.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	2.0	9.0	1.0	0.0	2.0	14.0
Merged-chr2-93461009-4	chr2	93460494	93461494	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040532, intron 2 of 4)	intron (NR_040532, intron 2 of 4)	857.0	NM_001271461	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0.0	1.0	4.0	5.0	3.5	8.5
Merged-chr4-32239999-4	chr4	32239512	32240512	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-177423.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	4.5	2.5	4.0	4.5	1.5	0.5
Merged-chr2-73548733-4	chr2	73548180	73549180	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19193.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-100211287-4	chr14	100210807	100211807	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61511.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-101601014-4	chr3	101600503	101601503	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	3704.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-178242336-4	chr1	178241837	178242837	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024282, intron 2 of 4)	B2_Mm2|SINE|B2	54920.0	NM_024282	78825.0	Mm.440132	NM_024282	ENSMUSG00000026502	Desi2	5830417C01Rik|DeSI-2|Fam152a|Pppde1	desumoylating isopeptidase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120156062-4	chr6	120155556	120156556	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-37767.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107594156-4	chr11	107593661	107594661	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198298, intron 5 of 31)	intron (NM_198298, intron 5 of 31)	-43561.0	NR_105897	102465562.0		NR_105897	ENSMUSG00000098497	Mir6932	Gm27691|mmu-mir-6932	microRNA 6932	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8638895-4	chr12	8638390	8639390	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35244.0	NM_001160221	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	2.0	3.0	0.5	0.0	3.0	0.0
Merged-chr17-34649393-4	chr17	34648885	34649885	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017406, intron 5 of 17)	intron (NM_017406, intron 5 of 17)	2239.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	20.0	26.0	33.5	20.0	43.5	22.0
Merged-chr7-143449747-4	chr7	143449239	143450239	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11311.0	NM_009876	12577.0	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34947752-2	chr17	34947252	34948252	+	994.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	3256.0	NR_028527	100217427.0		NR_028527	ENSMUSG00000093009	Snord52	MBII-297	small nucleolar RNA, C/D box 52	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13298064-4	chr9	13297548	13298548	+	994.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51092.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-14600057-5	chr14	14599459	14600459	+	994.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103066.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	4.0	8.0	10.0	18.0	3.5	11.0
Merged-chr2-4882031-8	chr2	4881564	4882564	+	994.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175400, intron 1 of 8)	CpG	500.0	NM_175400	109079.0	Mm.34329	NM_175400	ENSMUSG00000026662	Sephs1	1110046B24Rik|AA589574|AI505014|AW111620|SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding	4.0	0.5	1.0	0.5	0.0	3.5
Merged-chr5-122146497-4	chr5	122146010	122147010	+	994.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8448.0	NM_183307	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95508230-2	chr10	95507730	95508730	+	994.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6281.0	NM_001359477	67270.0	Mm.30008	NM_026065	ENSMUSG00000062981	Mrpl42	2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|L42mt|MRP-L31|MRP-L42|MRP-S32|PTD007|Rpml31|S32mt	mitochondrial ribosomal protein L42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53904445-4	chr18	53903935	53904935	+	994.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152809, intron 3 of 12)	Lx8|LINE|L1	42322.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	1.0	6.5	6.5	2.0	7.5	10.0
Merged-chr11-61794969-4	chr11	61794473	61795473	+	994.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013881, intron 20 of 26)	intron (NM_013881, intron 20 of 26)	-32885.0	NM_001164243	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24282678-4	chr16	24282176	24283176	+	994.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110674.0	NM_178665	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67352600-4	chr17	67352089	67353089	+	994.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	1870.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59964935-5	chr10	59964360	59965360	+	994.371399	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13090.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43811960-4	chr1	43811468	43812468	+	994.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026430, intron 1 of 14)	ORR1D2|LTR|ERVL-MaLR	15740.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92021819-4	chr16	92021336	92022336	+	994.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-36486.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91457718-2	chr2	91457218	91458218	+	994.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001145857, exon 1 of 12)	exon (NM_001145857, exon 1 of 12)	187.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50896277-4	chr14	50895790	50896790	+	994.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3035.0	NM_001166651	546611.0	Mm.390692	NM_001166651	ENSMUSG00000090799	Klhl33	EG546611	kelch-like 33	protein-coding	2.0	9.0	4.0	6.0	15.0	11.0
Merged-chr2-91101577-4	chr2	91101074	91102074	+	994.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011355, intron 2 of 4)	intron (NM_011355, intron 2 of 4)	4896.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	9.0	37.0	28.5	6.5	49.5	31.0
Merged-chr8-35379371-4	chr8	35378876	35379876	+	994.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177741, intron 1 of 1)	intron (NM_177741, intron 1 of 1)	3635.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-167339546-4	chr1	167339013	167340013	+	994.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-10478.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67425364-4	chr7	67424869	67425869	+	994.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52511.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	44.5	126.5	88.0	34.0	120.5	75.0
Merged-chr16-14125459-3	chr16	14124954	14125954	+	994.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081154, intron 21 of 26)	intron (NM_001081154, intron 21 of 26)	33820.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	1.0	2.5	3.5	8.5	13.5	1.0
Merged-chr16-17727389-4	chr16	17726885	17727885	+	994.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-4438.0	NM_001040683	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170218600-4	chr2	170218070	170219070	+	994.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75895.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	7.5	10.5	4.5	3.5	18.5	12.5
Merged-chr8-105622653-4	chr8	105622173	105623173	+	994.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081241)	TTS (NM_001081241)	7207.0	NR_035492	100316712.0		NR_035492	ENSMUSG00000089432	Mir1966	mir-1966|mmu-mir-1966	microRNA 1966	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26957162-4	chr17	26956643	26957643	+	994.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001281491, exon 8 of 19)	exon (NM_001281491, exon 8 of 19)	-9024.0	NR_037244	100526534.0		NR_037244	ENSMUSG00000093118	Mir3083	mir-3083|mmu-mir-3083	microRNA 3083	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135535488-4	chr1	135534973	135535973	+	994.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173437, intron 2 of 28)	intron (NM_173437, intron 2 of 28)	49882.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124496169-4	chr6	124495657	124496657	+	994.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181344, intron 2 of 5)	HAL1|LINE|L1	3044.0	NM_181344	232371.0	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87459452-4	chr17	87458946	87459946	+	994.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12511.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	1.5	5.5	4.5	2.5	3.5	3.5
Merged-chr5-134106055-4	chr5	134105567	134106567	+	994.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030719, intron 1 of 8)	ORR1E|LTR|ERVL-MaLR	6319.0	NM_030719	80909.0	Mm.45218	NM_030719	ENSMUSG00000015944	Gatsl2	7530428J21Rik|AW742413|Castor2|Gats|Gatsl1	GATS protein-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100622371-4	chr15	100621869	100622869	+	994.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033872, intron 3 of 3)	intron (NM_001033872, intron 3 of 3)	6707.0	NM_011873	23994.0	Mm.486175	NM_011873	ENSMUSG00000000346	Dazap2	AI314727|Brbp|Gcap28|Prtb|gt6-12|mKIAA0058	DAZ associated protein 2	protein-coding	2.0	13.0	13.5	5.5	5.0	6.0
Merged-chr12-79321096-4	chr12	79320597	79321597	+	994.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 5 of 10)	B4A|SINE|B4	23746.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118263570-4	chr2	118263089	118264089	+	994.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6623.0	NM_027759	71313.0	Mm.85046	NM_027759	ENSMUSG00000027344	Fsip1	1700012M13Rik|4933432K11Rik	fibrous sheath-interacting protein 1	protein-coding	10.5	19.5	12.5	6.0	20.5	13.5
Merged-chr3-127410422-3	chr3	127409934	127410934	+	994.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	-1376.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	15.0	10.0	19.0	7.0	9.5	4.5
Merged-chr2-45048810-2	chr2	45048310	45049310	+	994.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-25633.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106039781-4	chr8	106039285	106040285	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301176, intron 6 of 14)	intron (NM_001301176, intron 6 of 14)	-19818.0	NM_010901	18021.0	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43670766-4	chr19	43670241	43671241	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145156, intron 1 of 3)	intron (NM_145156, intron 1 of 3)	4140.0	NM_145156	246696.0	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	46.5	68.0	43.0	24.5	26.0	14.5
Merged-chr11-23768056-4	chr11	23767562	23768562	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009044, intron 1 of 9)	intron (NM_009044, intron 1 of 9)	2908.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121717381-2	chr9	121716881	121717881	+	994.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-1800.0	NM_010918	18087.0	Mm.32842	NM_010918	ENSMUSG00000032525	Nktr	5330401F18Rik|D9Wsu172e	natural killer tumor recognition sequence	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32689589-4	chr2	32689085	32690085	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010236, intron 4 of 14)	intron (NM_010236, intron 4 of 14)	-1819.0	NR_106168	102465885.0		NR_106168	ENSMUSG00000098972	Mir8093	Gm27548|mmu-mir-8093	microRNA 8093	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67905468-4	chr15	67904963	67905963	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	353393.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	2.5	1.0	5.0	2.5	0.0	5.0
Merged-chr17-34557143-4	chr17	34556616	34557616	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-7179.0	NM_010929	18132.0	Mm.173813	NM_010929	ENSMUSG00000015468	Notch4	Int-3|Int3|N4	notch 4	protein-coding	7.0	19.0	28.5	3.0	17.0	20.5
Merged-chr4-53111930-4	chr4	53111420	53112420	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	47975.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	5.5	7.5	10.5	8.0	8.5	10.5
Merged-chr7-130903076-4	chr7	130902583	130903583	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133942, intron 6 of 9)	intron (NM_133942, intron 6 of 9)	-5185.0	NR_106028	102466219.0		NR_106028	ENSMUSG00000104914	Mir7061	mmu-mir-7061	microRNA 7061	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79926992-4	chr10	79926499	79927499	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007880)	promoter-TSS (NM_007880)	-44.0	NM_001288626	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120099111-4	chr2	120098606	120099606	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 4 of 5)	intron (NM_133838, intron 4 of 5)	55469.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	24.0	32.0	11.0	8.0	14.5	20.5
Merged-chr17-65765161-4	chr17	65764654	65765654	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	Lx5|LINE|L1	7598.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6695612-4	chr2	6695108	6696108	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	26054.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-69533502-6	chr13	69532994	69533994	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001169131, exon 1 of 13)	5' UTR (NM_001169131, exon 1 of 13)	370.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	20.0	16.0	28.0	26.5	31.0	32.5
Merged-chr1-180343057-4	chr1	180342564	180343564	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-12515.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95843401-4	chr10	95842909	95843909	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97254.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127514389-3	chr10	127513904	127514904	+	994.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001098789)	promoter-TSS (NM_001098789)	-535.0	NM_001098789	407790.0	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	0.0	0.0	1.0	0.0	0.0	0.5
Merged-chr8-91411858-3	chr8	91411356	91412356	+	994.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011936, intron 3 of 8)	intron (NM_011936, intron 3 of 8)	98331.0	NM_011936	26383.0	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	0.0	0.0	0.0	4.5	7.5	3.5
Merged-chr6-71980258-4	chr6	71979778	71980778	+	994.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009088)	TTS (NM_009088)	62250.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40251134-4	chr4	40250617	40251617	+	994.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11292.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55815546-4	chr14	55815053	55816053	+	994.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-9242.0	NM_001168346	73181.0	Mm.27908	NM_023699	ENSMUSG00000023411	Nfatc4	3110041H08Rik|AW107667|AW546455|Nfat3	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118597774-4	chr2	118597269	118598269	+	994.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009773)	promoter-TSS (NM_009773)	-442.0	NM_009773	12236.0	Mm.29133	NM_009773	ENSMUSG00000040084	Bub1b	AU045529|BUBR1	BUB1B, mitotic checkpoint serine/threonine kinase	protein-coding	101.5	302.5	188.0	42.5	149.0	86.0
Merged-chr12-4160555-4	chr12	4160063	4161063	+	994.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 2 of 21)	intron (NM_001159537, intron 2 of 21)	26410.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83323802-4	chr6	83323290	83324290	+	994.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2249.0	NM_145571	232157.0	Mm.29500	NM_145571	ENSMUSG00000043131	Mob1a	4022402H07Rik|MOB1|MOB4B|Mobk1b|Mobkl1b	MOB kinase activator 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-33844320-4	chr3	33843826	33844826	+	994.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026222)	promoter-TSS (NM_026222)	-16.0	NM_026222	51938.0	Mm.275710	NM_026222	ENSMUSG00000027676	Ccdc39	4921507O14Rik|AI447426|AI844750|D3Ertd789e|b2b1304Clo|b2b1735Clo|b2b2025.1Clo|prh	coiled-coil domain containing 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70833265-4	chr9	70832766	70833766	+	994.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	101542.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11682868-4	chr11	11682406	11683406	+	994.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3019.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5792676-4	chr11	5792165	5793165	+	994.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146309, intron 2 of 12)	intron (NM_001146309, intron 2 of 12)	4182.0	NM_013810	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	14.5	0.0	0.0	14.5	0.0	0.0
Merged-chr1-98095571-4	chr1	98095058	98096058	+	994.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013626)	promoter-TSS (NM_013626)	74.0	NM_013626	18484.0	Mm.5121	NM_013626	ENSMUSG00000026335	Pam	PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98504665-4	chr15	98504161	98505161	+	994.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	7187.0	NM_001001807	258502.0	Mm.377539	NM_001001807	ENSMUSG00000054036	Olfr279	MOR122-1|Olfr234|Olfr234-ps1|Olfr279-ps1	olfactory receptor 279	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132653241-4	chr7	132652717	132653717	+	994.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 6 of 6)	intron (NM_029609, intron 6 of 6)	42574.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-125122588-4	chr4	125122009	125123009	+	994.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153159, intron 2 of 5)	intron (NM_153159, intron 2 of 5)	5372.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-82670430-4	chr10	82669930	82670930	+	994.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029102, intron 2 of 9)	intron (NM_029102, intron 2 of 9)	20220.0	NM_029102	74782.0	Mm.191281	NM_029102	ENSMUSG00000020251	Glt8d2	1110021D20Rik	glycosyltransferase 8 domain containing 2	protein-coding	3.5	8.5	4.0	1.5	0.0	8.0
Merged-chr11-78115514-4	chr11	78115024	78116024	+	994.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145430, intron 1 of 2)	intron (NM_145430, intron 1 of 2)	20851.0	NM_145430	216971.0	Mm.119387	NM_145430	ENSMUSG00000037750	Fam222b	9630020I17Rik	family with sequence similarity 222, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102811254-4	chr14	102810749	102811749	+	994.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	171383.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-125441866-4	chr1	125441363	125442363	+	994.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6136.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147814703-4	chr4	147814203	147815203	+	994.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	-4915.0	NM_001127189	100041677.0	Mm.327194	NM_001127189	ENSMUSG00000078495	Zfp984	Gm13157	zinc finger protein 984	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40025316-4	chr10	40024826	40025826	+	994.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144821)	promoter-TSS (NM_144821)	-58.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-142752717-4	chr6	142752235	142753235	+	994.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3951.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58453121-3	chr16	58452639	58453639	+	994.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356484, intron 9 of 15)	intron (NM_001356484, intron 9 of 15)	44604.0	NM_028523	73379.0	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101463105-4	chr11	101462618	101463618	+	994.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012037, intron 1 of 5)	intron (NM_012037, intron 1 of 5)	3081.0	NM_012037	26949.0	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	0.0	20.0	11.0	2.0	14.5	9.0
Merged-chr1-162547839-2	chr1	162547288	162548288	+	994.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_144877, intron 1 of 7)	intron (NM_144877, intron 1 of 7)	557.0	NM_144877	71449.0	Mm.270569	NM_144877	ENSMUSG00000026694	Mettl13	5630401D24Rik	methyltransferase like 13	protein-coding	81.0	145.0	160.5	138.5	173.5	128.5
Merged-chr9-118679038-4	chr9	118678543	118679543	+	994.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 11 of 27)	MTD|LTR|ERVL-MaLR	-32649.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	5.5	28.0	22.5	9.0	6.5	9.0
Merged-chr12-80816619-4	chr12	80816118	80817118	+	994.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	26086.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65583242-4	chr9	65582755	65583755	+	994.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3168.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.0	7.5	3.0	4.0	0.0	0.0
Merged-chr1-131526594-4	chr1	131526073	131527073	+	994.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 1 of 22)	CpG	788.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79725090-4	chr12	79724592	79725592	+	994.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 8 of 10)	intron (NM_009014, intron 8 of 10)	199641.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20181826-3	chr14	20181302	20182302	+	994.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021542)	promoter-TSS (NM_021542)	-20.0	NM_021542	16529.0	Mm.68998	NM_021542	ENSMUSG00000023243	Kcnk5	KCNK5b|TASK-2	potassium channel, subfamily K, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-140671527-4	chr2	140671027	140672027	+	994.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178382)	promoter-TSS (NM_178382)	-51.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51571415-4	chr10	51570924	51571924	+	994.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	19036.0	NM_029894	77296.0	Mm.30588	NM_029894	ENSMUSG00000019909	Fam162b	9430073N08Rik	family with sequence similarity 162, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65326358-4	chr5	65325855	65326855	+	994.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011258, intron 1 of 24)	intron (NM_011258, intron 1 of 24)	9284.0	NM_011258	19687.0	Mm.148877	NM_011258	ENSMUSG00000029191	Rfc1	140kDa|Alp145|RFC140|Recc1	replication factor C (activator 1) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124729510-4	chr6	124729017	124730017	+	994.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077705, intron 3 of 15)	B1F2|SINE|Alu	3637.0	NM_013545	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-115487375-4	chr9	115486858	115487858	+	994.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	105539.0	NR_130329	100316675.0		NR_130329	ENSMUSG00000080409	Mir467h	Mirn467h|mmu-mir-467h	microRNA 467h	ncRNA	20.0	72.5	35.5	22.5	20.0	13.5
Merged-chr6-108783700-4	chr6	108783184	108784184	+	994.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026011, intron 1 of 6)	CpG	625.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-95314909-4	chr1	95314417	95315417	+	994.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026321, intron 1 of 2)	intron (NM_026321, intron 1 of 2)	1289.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-58506958-4	chr4	58506460	58507460	+	994.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010336, intron 1 of 3)	intron (NM_010336, intron 1 of 3)	-7557.0	NM_001290486	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-86921107-4	chr8	86920579	86921579	+	994.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35821.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135368389-4	chr1	135367876	135368876	+	994.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_053106)	TTS (NM_053106)	6687.0	NM_175259	77552.0	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21926943-4	chr9	21926434	21927434	+	994.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164614)	promoter-TSS (NM_001164614)	354.0	NM_001253869	235043.0	Mm.253329	NM_178577	ENSMUSG00000040883	Tmem205	-	transmembrane protein 205	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120500275-4	chr5	120499776	120500776	+	994.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023625, intron 1 of 11)	intron (NM_023625, intron 1 of 11)	3347.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83070121-2	chr6	83069621	83070621	+	994.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009392, exon 1 of 3)	5' UTR (NM_009392, exon 1 of 3)	104.0	NM_009392	21909.0	Mm.37	NM_009392	ENSMUSG00000068327	Tlx2	Enx|Hox11L.1|Hox11l1|NCX|Ncx1|Tlx1l1|Tlx1l2	T cell leukemia, homeobox 2	protein-coding	0.0	0.0	0.0	0.0	5.0	0.0
Merged-chr8-84663604-2	chr8	84663104	84664104	+	994.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010499)	promoter-TSS (NM_010499)	-752.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	99.0	345.0	167.5	67.0	159.5	126.5
Merged-chr18-79759056-4	chr18	79758556	79759556	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-287839.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	4.5	5.0	3.0	3.0	2.5	4.5
Merged-chr15-51727962-2	chr15	51727462	51728462	+	994.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	137499.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	0.0	1.5	3.5	0.0	1.0	0.0
Merged-chr16-57234299-2	chr16	57233799	57234799	+	994.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2833.0	NM_001358433	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	2.0	0.0	2.0	1.0	0.0	0.0
Merged-chr6-99261206-2	chr6	99260706	99261706	+	994.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053202, intron 2 of 18)	intron (NM_053202, intron 2 of 18)	5309.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114594867-4	chr5	114594350	114595350	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004180, intron 2 of 2)	intron (NM_001004180, intron 2 of 2)	26599.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-17656918-2	chr15	17656418	17657418	+	994.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	712709.0	NR_045711	70886.0	Mm.399021	NR_045711	ENSMUSG00000098150	4921515E04Rik	-	RIKEN cDNA 4921515E04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-93270468-4	chr15	93269976	93270976	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346785, intron 1 of 7)	intron (NM_001346785, intron 1 of 7)	4703.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52626876-2	chr13	52626376	52627376	+	994.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 7 of 13)	intron (NM_011518, intron 7 of 13)	29994.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164838447-2	chr2	164837947	164838947	+	994.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038492, intron 12 of 14)	intron (NM_001038492, intron 12 of 14)	4674.0	NM_008906	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	2.5	1.5	4.5	6.5	2.0	8.0
Merged-chr8-60978705-4	chr8	60978210	60979210	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173873, intron 1 of 12)	intron (NM_173873, intron 1 of 12)	4601.0	NM_173873	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-44050381-4	chr5	44049866	44050866	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163578, intron 3 of 22)	intron (NM_001163578, intron 3 of 22)	44402.0	NM_001163581	19126.0	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	6.5	4.0	5.0	0.0	7.5	2.0
Merged-chr3-55660466-4	chr3	55659952	55660952	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030595, intron 49 of 57)	intron (NM_030595, intron 49 of 57)	-122058.0	NM_010750	17116.0	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6459724-4	chr19	6459229	6460229	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205235, intron 6 of 21)	intron (NM_001205235, intron 6 of 21)	40991.0	NM_001205234	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-63826967-4	chr17	63826480	63827480	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37001.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44378500-4	chr7	44378002	44379002	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3472.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21742781-2	chr14	21742281	21743281	+	994.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013849)	promoter-TSS (NM_013849)	98.0	NM_013849	27389.0	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-15671905-4	chr10	15671414	15672414	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119863.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39542035-4	chr18	39541527	39542527	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54782.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119435039-2	chr8	119434539	119435539	+	994.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2123.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139131678-4	chr7	139131138	139132138	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021302, intron 2 of 11)	intron (NM_021302, intron 2 of 11)	45637.0	NM_011993	26757.0	Mm.250414	NM_011993	ENSMUSG00000025478	Dpysl4	AI173505|CRMP-3|Crmp3|DPY4|Drp-4|Ulip4	dihydropyrimidinase-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58038765-2	chr9	58038265	58039265	+	994.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243265, intron 4 of 4)	intron (NM_001243265, intron 4 of 4)	6491.0	NM_001243265	330951.0	Mm.406992	NM_001243265		Gm16130	E330033L03	predicted gene 16130	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-76142055-4	chr5	76141552	76142552	+	993.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020611, intron 1 of 5)	intron (NM_020611, intron 1 of 5)	1779.0	NM_020611	57357.0	Mm.289446	NM_020611	ENSMUSG00000029233	Srd5a3	1110025P14Rik|A430076C09|AV364670|AW987574|D730040M03Rik|H5ar|S5AR 3|Srd5a2l	steroid 5 alpha-reductase 3	protein-coding	0.0	3.0	1.5	0.0	2.5	1.0
Merged-chr16-48832232-4	chr16	48831740	48832740	+	993.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10312.0	NM_020509	57262.0	Mm.441868	NM_020509	ENSMUSG00000061100	Retnla	1810019L16Rik|Fizz-1|Fizz1|HIMF|RELM-alpha|RELMa|RELMalpha|Xcp2	resistin like alpha	protein-coding	7.5	18.5	9.5	7.0	1.5	12.0
Merged-chr2-30441235-4	chr2	30440726	30441726	+	993.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138748, intron 8 of 9)	intron (NM_138748, intron 8 of 9)	25176.0	NM_138748	110854.0	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80932869-4	chr10	80932392	80933392	+	993.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008655)	TTS (NM_008655)	2801.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43676011-4	chr19	43675488	43676488	+	993.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045645, exon 1 of 1)	non-coding (NR_045645, exon 1 of 1)	810.0	NR_045645	100502982.0	Mm.313570	NR_045645		BC037704	-	cDNA sequence BC037704	ncRNA	40.5	122.5	65.0	20.5	81.0	78.5
Merged-chr12-80063982-4	chr12	80063490	80064490	+	993.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49023.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-114947564-4	chr4	114947085	114948085	+	993.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21572.0	NM_015758	30923.0	Mm.377122	NM_015758	ENSMUSG00000044518	Foxe3	FREAC8|dyl|rct	forkhead box E3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100642645-4	chr13	100642143	100643143	+	993.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283011, intron 4 of 17)	B2_Mm2|SINE|B2	8418.0	NM_001044371	19356.0	Mm.248489	NM_011233	ENSMUSG00000021635	Rad17	MmRad24	RAD17 checkpoint clamp loader component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-55308697-4	chr9	55308212	55309212	+	993.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-18201.0	NM_172923	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110860308-3	chr7	110859802	110860802	+	993.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053247, intron 1 of 5)	intron (NM_053247, intron 1 of 5)	2651.0	NM_053247	114332.0	Mm.396078	NM_053247	ENSMUSG00000030787	Lyve1	1200012G08Rik|Crsbp-1|Lyve-1|Xlkd1	lymphatic vessel endothelial hyaluronan receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-45894380-3	chr1	45893900	45894900	+	993.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31194.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125351497-4	chr6	125351005	125352005	+	993.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011609, intron 1 of 9)	intron (NM_011609, intron 1 of 9)	1782.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	120.5	189.5	182.0	52.5	179.0	99.5
Merged-chr8-39650172-4	chr8	39649654	39650654	+	993.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7476.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	36.5	156.5	62.0	19.5	131.5	65.5
Merged-chr11-21081279-4	chr11	21080780	21081780	+	993.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5|LINE|L1	-10044.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-7397055-4	chr1	7396567	7397567	+	993.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	308147.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84883138-4	chr1	84882631	84883631	+	993.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025386, intron 2 of 3)	intron (NM_025386, intron 2 of 3)	43290.0	NM_025386	66153.0	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31380464-4	chr14	31379951	31380951	+	993.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 3 of 7)	intron (NM_001347585, intron 3 of 7)	37226.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146158204-4	chr3	146157704	146158704	+	993.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 1 of 13)	intron (NM_001005846, intron 1 of 13)	8030.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	9.5	24.5	8.5	6.0	19.5	6.5
Merged-chr18-34550122-3	chr18	34549631	34550631	+	993.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7803.0	NM_009290	20890.0	Mm.558	NM_009290	ENSMUSG00000012282	Wnt8a	Stra11|Wnt-8A|Wnt-8D|Wnt8d	wingless-type MMTV integration site family, member 8A	protein-coding	1.0	10.0	3.5	0.5	14.0	1.5
Merged-chr4-63402522-8	chr4	63401975	63402975	+	993.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 1 of 21)	intron (NM_001045514, intron 1 of 21)	970.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117839090-4	chr10	117838596	117839596	+	993.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	B3|SINE|B2	6878.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57706272-4	chr15	57705741	57706741	+	993.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 1 of 3)	intron (NM_199449, intron 1 of 3)	11574.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-87817031-4	chr10	87816561	87817561	+	993.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41204.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-36271359-4	chr2	36270856	36271856	+	993.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40930.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-19872999-4	chr4	19872497	19873497	+	993.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49569.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119126905-2	chr4	119126363	119127363	+	993.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011400, intron 2 of 9)	intron (NM_011400, intron 2 of 9)	18118.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	13.5	31.5	26.5	9.0	26.5	23.5
Merged-chr1-135131205-4	chr1	135130710	135131710	+	993.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153383, intron 1 of 36)	intron (NR_153383, intron 1 of 36)	1365.0	NR_153383	13924.0	Mm.4450	NM_007955		Ptprv	Esp|OST|OST-PTP	protein tyrosine phosphatase, receptor type, V	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29094628-6	chr17	29094132	29095132	+	993.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007669, intron 1 of 2)	CpG	863.0	NM_007669	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35064486-4	chr7	35063993	35064993	+	993.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-7927.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106759034-3	chr1	106758528	106759528	+	993.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027534, intron 1 of 9)	intron (NM_027534, intron 1 of 9)	714.0	NM_027534	70750.0	Mm.458911	NM_027534	ENSMUSG00000009905	Kdsr	6330410P18Rik|9430079B08Rik|Fvt1	3-ketodihydrosphingosine reductase	protein-coding	0.0	1.0	0.0	3.0	0.0	0.5
Merged-chr2-165858954-4	chr2	165858428	165859428	+	993.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252585)	promoter-TSS (NM_001252585)	-755.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	12.0	48.5	25.5	19.0	33.0	31.0
Merged-chr10-25268680-4	chr10	25268202	25269202	+	993.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 4 of 7)	intron (NM_018747, intron 4 of 7)	30461.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46613395-4	chr18	46612898	46613898	+	993.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15694.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	9.5	18.5	13.5	14.0	13.0	20.5
Merged-chr11-20193241-4	chr11	20192753	20193753	+	993.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8159.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122637138-3	chr5	122636646	122637646	+	993.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6765.0	NM_001038839	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	0.0	0.5	1.0	2.0	9.0	14.5
Merged-chr9-104408697-4	chr9	104408245	104409245	+	993.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17368.0	NR_035516	100316725.0		NR_035516	ENSMUSG00000089406	Mir2136	mmu-mir-2136	microRNA 2136	ncRNA	31.0	118.0	91.5	95.0	154.5	132.5
Merged-chr8-69808855-8	chr8	69808367	69809367	+	993.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198101, intron 1 of 20)	intron (NM_198101, intron 1 of 20)	180.0	NM_198101	78816.0	Mm.324305	NM_198101	ENSMUSG00000036246	Gmip	5031419I10Rik	Gem-interacting protein	protein-coding	34.5	54.0	71.5	55.0	131.0	75.5
Merged-chr9-124122257-4	chr9	124121725	124122725	+	993.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009917, intron 1 of 1)	intron (NM_009917, intron 1 of 1)	682.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121968008-6	chr3	121967521	121968521	+	993.8095089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356524, intron 1 of 22)	intron (NM_001356524, intron 1 of 22)	215.0	NM_001356524	214137.0	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-34047145-4	chr15	34046614	34047614	+	993.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35605.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	43.5	90.0	102.5	53.0	100.5	83.0
Merged-chr11-45750467-4	chr11	45750031	45751031	+	993.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57552.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105805782-4	chr1	105805337	105806337	+	993.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009399, intron 1 of 9)	Lx8|LINE|L1	25114.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88372673-4	chr10	88372180	88373180	+	993.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6732.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-116587806-4	chr8	116587316	116588316	+	993.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 4 of 6)	intron (NM_029441, intron 4 of 6)	82801.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165112306-4	chr2	165111743	165112743	+	993.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_174988, exon 12 of 12)	exon (NM_174988, exon 12 of 12)	-21493.0	NR_033448	72211.0	Mm.482899	NR_033448	ENSMUSG00000078935	1700025C18Rik	-	RIKEN cDNA 1700025C18 gene	ncRNA	0.5	4.0	3.0	0.5	0.0	0.5
Merged-chr1-65010328-4	chr1	65009848	65010848	+	993.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22411.0	NM_001310617	70861.0	Mm.18725	NM_027582	ENSMUSG00000025955	Akr1cl	4921521F21Rik|AI451536|AI503553	aldo-keto reductase family 1, member C-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101165797-4	chr15	101165293	101166293	+	993.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8279.0	NM_007395	11479.0	Mm.308467	NM_007395	ENSMUSG00000000532	Acvr1b	6820432J04|ALK-4|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103019073-4	chr11	103018553	103019553	+	993.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1906.0	NM_026551	68087.0	Mm.277449	NM_026551	ENSMUSG00000020935	Dcakd	3010024O21Rik|6720485C15Rik|AI849483	dephospho-CoA kinase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165493340-4	chr2	165492850	165493850	+	993.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001007581)	promoter-TSS (NM_001007581)	-36.0	NM_001007581	381406.0	Mm.330785	NM_001007581	ENSMUSG00000039725	Trp53rka	2810408M09Rik	transformation related protein 53 regulating kinase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126949938-4	chr7	126949420	126950420	+	993.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252567)	promoter-TSS (NM_001252567)	-338.0	NM_001361488	233879.0	Mm.444143	NM_001039645	ENSMUSG00000046378	Asphd1	A830007L07Rik|Gm168	aspartate beta-hydroxylase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148586812-3	chr4	148586307	148587307	+	993.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16C|LTR|ERVK	-4706.0	NM_009272	20810.0	Mm.10	NM_009272	ENSMUSG00000006442	Srm	AA407669|SpdST|SpdSy	spermidine synthase	protein-coding	3.0	4.5	4.0	20.0	58.5	43.0
Merged-chr2-32488849-3	chr2	32488341	32489341	+	993.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37371.0	NM_146118	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36708599-4	chr15	36708097	36709097	+	993.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	82335.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102316405-4	chr15	102315910	102316910	+	993.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356312, intron 18 of 30)	intron (NM_001356312, intron 18 of 30)	-9706.0	NM_027044	56612.0	Mm.158264	NM_020031	ENSMUSG00000001289	Pfdn5	1190001O17Rik|1700010A06Rik|D15Ertd697e|Eig1|MM-1	prefoldin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27335957-4	chr14	27335432	27336432	+	993.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289687)	promoter-TSS (NM_001289687)	-105.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68899264-4	chr11	68898760	68899760	+	993.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2306.0	NM_009080	19941.0	Mm.3229	NM_009080	ENSMUSG00000060938	Rpl26	SIG-20	ribosomal protein L26	protein-coding	7.0	0.0	6.5	8.0	1.5	5.0
Merged-chr10-96910110-4	chr10	96909608	96910608	+	993.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-125660.0	NR_045358	75301.0	Mm.108650	NR_045358	ENSMUSG00000111924	4930556N09Rik	-	RIKEN cDNA 4930556N09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-150836967-4	chr5	150836459	150837459	+	993.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115648.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96578346-4	chr3	96577848	96578848	+	993.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001293701, exon 7 of 7)	3' UTR (NM_001293701, exon 7 of 7)	-11547.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	12.0	74.5	37.5	23.0	64.5	36.5
Merged-chr12-3843629-4	chr12	3843116	3844116	+	993.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 2 of 22)	intron (NM_007872, intron 2 of 22)	18628.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62613880-4	chr11	62613363	62614363	+	993.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357955, intron 2 of 3)	intron (NM_001357955, intron 2 of 3)	9333.0	NR_028541	100217444.0		NR_028541		Snord65	MBII-135|snoRNA135	small nucleolar RNA, C/D box 65	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62481425-4	chr4	62480914	62481914	+	993.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138653, intron 1 of 6)	intron (NM_138653, intron 1 of 6)	1347.0	NM_138653	192120.0	Mm.29808	NM_138653	ENSMUSG00000028392	Bspry	-	B-box and SPRY domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70970694-7	chr11	70970201	70971201	+	993.723816	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_075087)	promoter-TSS (NR_075087)	501.0	NM_001252415	69723.0	Mm.275691	NM_027186	ENSMUSG00000018449	Rpain	2400006N03Rik|Rip	RPA interacting protein	protein-coding	9.0	21.0	15.5	14.5	62.5	25.0
Merged-chr7-45454868-12	chr7	45454371	45455371	+	993.7222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030678, exon 15 of 16)	exon (NM_030678, exon 15 of 16)	5015.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97855763-7	chr6	97855265	97856265	+	993.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	48707.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	57.0	101.5	85.0	46.5	118.5	97.0
Merged-chr4-74252691-4	chr4	74252165	74253165	+	993.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356561, intron 1 of 20)	intron (NM_001356561, intron 1 of 20)	786.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46904036-4	chr17	46903542	46904542	+	993.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6443.0	NM_008938	19133.0	Mm.291370	NM_008938	ENSMUSG00000023978	Prph2	AOFMD|AVMD|Nmf193|PRPH|RP7|Rd-2|Rd2|Rds|Tspan22|rds	peripherin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119844827-4	chr8	119844336	119845336	+	993.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4257.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-33073164-4	chr4	33072659	33073659	+	993.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008076, intron 2 of 8)	B2_Mm2|SINE|B2	10047.0	NM_008076	14409.0	Mm.6227	NM_008076	ENSMUSG00000023267	Gabrr2	-	gamma-aminobutyric acid (GABA) C receptor, subunit rho 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-95598304-4	chr1	95597798	95598798	+	993.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009183, intron 4 of 4)	intron (NM_009183, intron 4 of 4)	69296.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47688998-4	chr17	47688547	47689547	+	993.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025365)	promoter-TSS (NM_025365)	-661.0	NM_001164729	66119.0	Mm.89912	NM_025365	ENSMUSG00000033475	Tomm6	1110002E23Rik|AI663970	translocase of outer mitochondrial membrane 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61451071-4	chr8	61450587	61451587	+	993.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36647.0	NM_145595	234309.0	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-14130367-4	chr10	14129881	14130881	+	993.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010437, exon 4 of 9)	exon (NM_010437, exon 4 of 9)	164002.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	1.0	3.5	12.0	5.5	5.0	5.0
Merged-chr1-43507969-4	chr1	43507471	43508471	+	993.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	URR1B|DNA|hAT-Charlie	62220.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121196964-4	chr5	121196454	121197454	+	993.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5557.0	NM_011202	19247.0	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-105034168-4	chr9	105033666	105034666	+	993.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001357439, exon 16 of 16)	3' UTR (NM_001357439, exon 16 of 16)	-19102.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	30.5	40.5	52.0	60.0	156.5	89.5
Merged-chr10-17691852-3	chr10	17691338	17692338	+	993.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-31390.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31767370-3	chr5	31766866	31767866	+	993.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 3 of 11)	MTD|LTR|ERVL-MaLR	69316.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53264743-3	chr4	53264231	53265231	+	993.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033139, intron 1 of 1)	intron (NR_033139, intron 1 of 1)	761.0	NR_033140	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	1.5	6.5	4.5	1.0	7.0	9.0
Merged-chr14-22913102-4	chr14	22912593	22913593	+	993.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 6 of 6)	intron (NM_028275, intron 6 of 6)	181478.0	NR_033550	791307.0	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	-	predicted gene 10248	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138973555-4	chr4	138973073	138974073	+	993.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029857, intron 1 of 16)	intron (NM_029857, intron 1 of 16)	668.0	NM_029857	77056.0	Mm.122336	NM_029857	ENSMUSG00000041143	Tmco4	4632413C14Rik|AI430825	transmembrane and coiled-coil domains 4	protein-coding	57.0	117.0	87.5	57.0	92.0	101.5
Merged-chr9-92250575-4	chr9	92250028	92251028	+	993.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011636, intron 1 of 8)	CpG	334.0	NM_011636	22038.0	Mm.421956	NM_011636	ENSMUSG00000032369	Plscr1	MmTRA1a|MmTRA1b|Nor1|Tra1|Tra1a|Tra1b|Tras1|Tras2	phospholipid scramblase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-91210200-4	chr10	91209709	91210709	+	993.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151510, intron 3 of 3)	MTD|LTR|ERVL-MaLR	10410.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-133512825-4	chr2	133512309	133513309	+	993.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39350.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-30575363-2	chr17	30574863	30575863	+	993.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172618, intron 1 of 11)	intron (NM_172618, intron 1 of 11)	924.0	NM_172618	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	47.0	114.5	58.5	26.0	41.0	26.5
Merged-chr16-92418464-2	chr16	92417964	92418964	+	993.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	ORR1A1-int|LTR|ERVL-MaLR	-18386.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	16.5	50.0	13.5	15.0	50.0	15.5
Merged-chr7-99089098-4	chr7	99088607	99089607	+	993.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 4 of 14)	intron (NM_178635, intron 4 of 14)	52037.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	27.5	93.5	33.0	36.0	78.0	43.5
Merged-chr18-39607366-4	chr18	39606863	39607863	+	993.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120118.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-137810344-4	chr3	137809830	137810830	+	993.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-26715.0	NR_105801	102466638.0		NR_105801	ENSMUSG00000099011	Mir6380	Gm27356|mmu-mir-6380	microRNA 6380	ncRNA	2.5	4.5	2.0	2.5	2.0	0.0
Merged-chr7-74908504-4	chr7	74908005	74909005	+	993.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121706.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-91673174-4	chr15	91672682	91673682	+	993.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025730)	promoter-TSS (NM_025730)	-42.0	NM_025730	66725.0	Mm.37558	NM_025730	ENSMUSG00000036273	Lrrk2	4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46	leucine-rich repeat kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83502420-4	chr6	83501944	83502944	+	993.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149734, intron 1 of 6)	intron (NR_149734, intron 1 of 6)	4525.0	NM_013764	27369.0	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	160.0	300.5	263.0	123.0	317.0	242.0
Merged-chr12-55648303-4	chr12	55647809	55648809	+	993.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003719, intron 36 of 39)	intron (NM_001003719, intron 36 of 39)	49392.0	NM_020287	56856.0	Mm.114886	NM_020287	ENSMUSG00000045440	Insm2	Mlt1	insulinoma-associated 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150913984-4	chr4	150913467	150914467	+	993.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4046.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-144932571-4	chr7	144932085	144933085	+	993.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007631, exon 5 of 5)	3' UTR (NM_007631, exon 5 of 5)	7340.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	18.5	31.0	40.0	16.5	21.0	33.5
Merged-chr19-12010506-4	chr19	12010000	12011000	+	993.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26240.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-143130595-4	chr6	143130094	143131094	+	993.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153819, intron 7 of 8)	intron (NR_153819, intron 7 of 8)	23337.0	NR_153819	102633311.0	Mm.333484	NR_153819		Gm31108	Gm31169	predicted gene, 31108	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54641647-5	chr14	54641161	54642161	+	993.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199470)	promoter-TSS (NM_199470)	-297.0	NM_199470	239096.0	Mm.386871	NM_199470	ENSMUSG00000059674	Cdh24	1700040A22Rik	cadherin-like 24	protein-coding	1.0	7.5	4.0	0.0	2.0	7.0
Merged-chr11-95595637-2	chr11	95595117	95596117	+	993.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7919.0	NM_033217	18053.0	Mm.283893	NM_033217	ENSMUSG00000000120	Ngfr	LNGFR|Tnfrsf16|p75|p75NGFR|p75NTR	nerve growth factor receptor (TNFR superfamily, member 16)	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr12-17682609-6	chr12	17682236	17683236	+	993.595215	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-8073.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	21.0	46.0	58.0	40.5	77.0	42.0
Merged-chr4-152009778-4	chr4	152009333	152010333	+	993.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033352, exon 1 of 4)	exon (NM_001033352, exon 1 of 4)	942.0	NM_001033352	242785.0	Mm.22306	NM_001033352	ENSMUSG00000073700	Klhl21	1810045K06Rik|D330008A20|mKIAA0469	kelch-like 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100446492-4	chr7	100445985	100446985	+	993.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 28 of 32)	intron (NM_001017985, intron 28 of 32)	-26506.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	5.5	8.0	8.5	1.0	9.0	14.0
Merged-chr8-115678374-4	chr8	115677877	115678877	+	993.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	28517.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-139379384-4	chr2	139378885	139379885	+	993.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114528.0	NM_001356507	228677.0	Mm.100450	NM_175467	ENSMUSG00000039092	Sptlc3	C130053K05Rik	serine palmitoyltransferase, long chain base subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-66857193-4	chr4	66856686	66857686	+	993.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29635.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-63827934-2	chr5	63827441	63828441	+	993.5833130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	15446.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	45.0	175.5	122.0	52.0	115.5	92.5
Merged-chr11-87026709-4	chr11	87026223	87027223	+	993.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32961.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79297294-4	chr12	79296814	79297814	+	993.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252562)	promoter-TSS (NM_001252562)	32.0	NM_009014	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55321892-3	chr12	55321378	55322378	+	993.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025373, intron 3 of 6)	intron (NM_025373, intron 3 of 6)	-18878.0	NM_021529	59032.0	Mm.427307	NM_021529	ENSMUSG00000021022	Ppp2r3c	4930511A21Rik|5730412A08Rik|G4-1|G5pr	protein phosphatase 2, regulatory subunit B'', gamma	protein-coding	0.0	4.0	1.5	2.0	7.5	8.0
Merged-chr1-59764055-4	chr1	59763501	59764501	+	993.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007561)	promoter-TSS (NM_007561)	-278.0	NM_007561	12168.0	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100203575-4	chr13	100203056	100204056	+	993.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1434.0	NM_010872	17948.0	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134635435-4	chr6	134634948	134635948	+	993.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2960.0	NM_026345	67729.0	Mm.57648	NM_026345	ENSMUSG00000032718	Mansc1	9130403P13Rik	MANSC domain containing 1	protein-coding	34.0	73.5	39.5	36.5	70.0	32.5
Merged-chr15-59643098-4	chr15	59642590	59643590	+	993.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5564.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108613306-4	chr12	108612815	108613815	+	993.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163395, intron 1 of 12)	intron (NM_001163395, intron 1 of 12)	7549.0	NM_001163395	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-67729134-4	chr13	67728643	67729643	+	993.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145622)	promoter-TSS (NM_145622)	30.0	NM_145622	235907.0	Mm.440123	NM_145622	ENSMUSG00000071281	Zfp65	KRAB5|Zfp71-rs1|pz114	zinc finger protein 65	protein-coding	0.5	8.5	1.5	0.0	0.0	0.0
Merged-chr1-16671279-4	chr1	16670793	16671793	+	993.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027415, intron 2 of 2)	B2_Mm2|SINE|B2	6102.0	NM_026392	70397.0	Mm.194225	NM_026392	ENSMUSG00000025940	Tmem70	1110020A09Rik|2210416J16Rik	transmembrane protein 70	protein-coding	19.0	43.5	30.0	25.5	46.5	39.0
Merged-chr10-42273877-4	chr10	42273335	42274335	+	993.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	2907.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121191421-4	chr5	121190999	121191999	+	993.53125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001109992)	promoter-TSS (NM_001109992)	-102.0	NM_011202	19247.0	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	58.5	158.5	97.0	48.5	132.0	101.0
Merged-chr2-52426851-4	chr2	52426339	52427339	+	993.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1965.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151429452-2	chr1	151428952	151429952	+	993.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026876, intron 1 of 14)	intron (NM_026876, intron 1 of 14)	910.0	NM_001357570	98685.0	Mm.289373	NM_026876	ENSMUSG00000053286	Trmt1l	1190005F20Rik|AW226554|C1orf25|Trm1-like|Trm1l	tRNA methyltransferase 1 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148907825-2	chr5	148907325	148908325	+	993.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153572, intron 3 of 10)	intron (NM_153572, intron 3 of 10)	20822.0	NM_153572	231912.0	Mm.397405	NM_153572	ENSMUSG00000041298	Katnal1	-	katanin p60 subunit A-like 1	protein-coding	0.0	6.0	7.0	0.0	0.5	5.5
Merged-chr14-55774056-2	chr14	55773556	55774556	+	993.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080435, intron 15 of 25)	intron (NM_080435, intron 15 of 25)	8094.0	NM_008519	16995.0	Mm.20853	NM_008519	ENSMUSG00000046908	Ltb4r1	BLT1|BLTR|Ltb4r|mBLTR	leukotriene B4 receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117900365-2	chr10	117899865	117900865	+	993.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-25094.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	24.0	106.5	78.5	71.5	96.5	69.5
Merged-chr5-139456845-4	chr5	139456344	139457344	+	993.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 1 of 4)	PB1D10|SINE|Alu	3690.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99474085-2	chr7	99473585	99474585	+	993.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028145)	TTS (NM_028145)	5622.0	NR_002173	449631.0	Mm.236868	NR_002173	ENSMUSG00000064966	Snord15b	Gm5775|Rnu15-b|Rnu15b|U15B	small nucleolar RNA, C/D box 14B	snoRNA	2.0	0.5	0.0	1.0	0.0	0.5
Merged-chr2-163611030-2	chr2	163610530	163611530	+	993.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_131225, intron 2 of 3)	intron (NR_131225, intron 2 of 3)	3818.0	NM_001305803	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73288577-2	chr12	73288077	73289077	+	993.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037717, intron 2 of 15)	intron (NM_001037717, intron 2 of 15)	1729.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-119040436-4	chr10	119039922	119040922	+	993.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152787, intron 3 of 3)	intron (NR_152787, intron 3 of 3)	10077.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	33.5	37.0	20.0	35.0	29.5	41.5
Merged-chr16-48675793-2	chr16	48675293	48676293	+	993.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96163.0	NM_198297	77647.0	Mm.167298	NM_198297	ENSMUSG00000030775	Trat1	C030046M14Rik|Tcrim|Trim	T cell receptor associated transmembrane adaptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20241514-2	chr11	20241014	20242014	+	993.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172260, intron 2 of 6)	intron (NM_172260, intron 2 of 6)	7910.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112673779-4	chr12	112673283	112674283	+	993.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331107, intron 1 of 13)	CpG	493.0	NM_001165894	11651.0	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122163941-4	chr2	122163448	122164448	+	993.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080510, intron 1 of 6)	intron (NM_080510, intron 1 of 6)	3248.0	NM_080510	70928.0	Mm.379188	NM_080510	ENSMUSG00000033368	Trim69	4921519C19Rik|Rnf36|Trif|Trimless	tripartite motif-containing 69	protein-coding	232.0	458.5	356.0	123.0	323.5	274.0
Merged-chr2-180920471-2	chr2	180919957	180920957	+	993.5	f0_c57.idr|f1_balb.idr	intron (NM_173761, intron 1 of 4)	CpG	479.0	NM_173761	228994.0	Mm.30205	NM_173761	ENSMUSG00000038848	Ythdf1	2210410K23Rik|8030473O16	YTH domain family 1	protein-coding	35.0	96.0	121.5	65.0	155.5	117.5
Merged-chr19-37370614-4	chr19	37370116	37371116	+	993.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-5787.0	NM_010615	16551.0	Mm.42203	NM_010615	ENSMUSG00000012443	Kif11	Eg5|Kif8|Kifl1|Knsl1	kinesin family member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120172421-4	chr6	120171933	120172933	+	993.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	MLT1F|LTR|ERVL-MaLR	-21390.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62542135-2	chr11	62541635	62542635	+	993.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2874.0	NM_028448	73139.0	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120729738-4	chr11	120729206	120730206	+	993.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007621, exon 8 of 8)	3' UTR (NM_007621, exon 8 of 8)	2315.0	NM_007621	12409.0	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53464843-4	chr19	53464349	53465349	+	993.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028427)	promoter-TSS (NR_028427)	-53.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	0.0	4.5	5.5	6.0	15.5	18.5
Merged-chr17-34914696-2	chr17	34914196	34915196	+	993.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001286573)	TTS (NM_001286573)	230.0	NM_023557	70129.0	Mm.183126	NM_023557	ENSMUSG00000007034	Slc44a4	2210409B01Rik|NG22|mTPPT1	solute carrier family 44, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-63888760-2	chr15	63888260	63889260	+	993.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_108053, intron 6 of 6)	intron (NR_108053, intron 6 of 6)	8053.0	NR_108053	665769.0	Mm.290602	NR_108053	ENSMUSG00000093867	Gsdmcl2	4921501E01Rik|4930453O09Rik|Gm7779	gasdermin C-like 2	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71483479-2	chr17	71482982	71483982	+	993.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8139.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	21.0	51.0	64.5	1.0	2.0	2.0
Merged-chr3-32403292-4	chr3	32402792	32403792	+	993.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32859.0	NM_008839	18706.0	Mm.260521	NM_008839	ENSMUSG00000027665	Pik3ca	6330412C24Rik|caPI3K|p110|p110alpha	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-34433135-4	chr12	34432615	34433615	+	993.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_024124, exon 4 of 12)	exon (NM_024124, exon 4 of 12)	95774.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54992057-4	chr18	54991591	54992591	+	993.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 1 of 8)	intron (NM_001360787, intron 1 of 8)	500.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-71485766-7	chr9	71485216	71486216	+	993.464294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164793)	promoter-TSS (NM_001164793)	267.0	NM_178602	28015.0	Mm.21094	NM_178602	ENSMUSG00000032199	Polr2m	AA407243|AA408799|AI303746|AW553238|D9Wsu138e|Grinl1a|mKIAA4185	polymerase (RNA) II (DNA directed) polypeptide M	protein-coding	88.0	156.0	112.0	78.0	181.5	158.5
Merged-chr2-73485603-4	chr2	73485110	73486110	+	993.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	143.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25607974-4	chr2	25607465	25608465	+	993.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029859)	TTS (NM_029859)	481.0	NM_001024616	227624.0	Mm.29600	NM_001024616	ENSMUSG00000015087	Rabl6	B230208H17Rik|Rbel1|Rbel1a|Rbel1b|parf	RAB, member RAS oncogene family-like 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88069970-4	chr6	88069493	88070493	+	993.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14480.0	NM_133933	103963.0	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-48695589-4	chr2	48695088	48696088	+	993.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118521.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25897746-4	chr15	25897249	25898249	+	993.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 3 of 8)	intron (NM_001034851, intron 3 of 8)	-35803.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90215463-4	chr7	90215013	90216013	+	993.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	49919.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	2.0	3.0	4.0	2.0	1.5	1.0
Merged-chr10-128091127-4	chr10	128090629	128091629	+	993.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_016774)	TTS (NM_016774)	-1654.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-11972057-4	chr15	11971547	11972547	+	993.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4985.0	NR_040447	73339.0	Mm.231975	NR_040447	ENSMUSG00000099349	1700047G03Rik	-	RIKEN cDNA 1700047G03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29495901-4	chr11	29495397	29496397	+	993.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176841, intron 25 of 31)	intron (NM_176841, intron 25 of 31)	19136.0	NM_026465	67939.0	Mm.251087	NM_026465	ENSMUSG00000032673	Prorsd1	2010316F05Rik|Ncrna00117|Prdxdd1	prolyl-tRNA synthetase domain containing 1	protein-coding	13.5	6.0	5.5	16.0	12.0	5.0
Merged-chr9-61371380-4	chr9	61370870	61371870	+	993.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083927)	promoter-TSS (NM_001083927)	-996.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95834940-3	chr11	95834430	95835430	+	993.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025659, intron 3 of 7)	intron (NM_025659, intron 3 of 7)	-7365.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50819888-3	chr14	50819404	50820404	+	993.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009632, intron 12 of 15)	intron (NM_009632, intron 12 of 15)	11988.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	66.0	116.5	68.0	30.0	28.0	28.5
Merged-chr4-45795849-4	chr4	45795324	45796324	+	993.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3198.0	NM_028270	72535.0	Mm.331583	NM_028270	ENSMUSG00000035561	Aldh1b1	2700007F14Rik	aldehyde dehydrogenase 1 family, member B1	protein-coding	7.5	19.0	3.5	12.0	14.0	6.5
Merged-chr13-104610695-7	chr13	104610183	104611183	+	993.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	206270.0	NM_026072	67285.0	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	25.5	59.5	36.5	18.0	47.0	26.5
Merged-chr7-120754853-4	chr7	120754370	120755370	+	993.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177697, intron 3 of 33)	B1_Mus2|SINE|Alu	15313.0	NM_177697	233813.0	Mm.389939	NM_177697	ENSMUSG00000030889	Vwa3a	E030013G06Rik	von Willebrand factor A domain containing 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-94668871-4	chr9	94668377	94669377	+	993.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1015.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-67526744-4	chr11	67526241	67527241	+	993.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6257.0	NM_008088	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	3.5	10.5	10.0	9.5	0.5	1.0
Merged-chr6-116073118-4	chr6	116072604	116073604	+	993.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	-78099.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71395806-2	chr8	71395306	71396306	+	993.4166869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181418)	promoter-TSS (NM_181418)	-5.0	NM_181418	234395.0	Mm.34874	NM_181418	ENSMUSG00000034911	Ushbp1	2210404N08Rik|9430064H24|AIEBP|MCC2	USH1 protein network component harmonin binding protein 1	protein-coding	0.0	12.5	0.0	0.5	12.5	0.0
Merged-chr6-42692279-4	chr6	42691782	42692782	+	993.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355769, intron 1 of 8)	intron (NM_001355769, intron 1 of 8)	818.0	NM_029930	77574.0	Mm.24652	NM_029930	ENSMUSG00000036667	Tcaf1	2810407D09Rik|3321401G04Rik|A230020K05Rik|AI848529|Fam115a	TRPM8 channel-associated factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96501591-4	chr3	96501098	96502098	+	993.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CGTG)n|Simple_repeat|Simple_repeat	-23587.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	8.5	42.5	23.5	6.0	26.5	12.0
Merged-chr10-67646219-2	chr10	67645719	67646719	+	993.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74260.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98943993-2	chr11	98943493	98944493	+	993.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177303, intron 1 of 8)	intron (NM_001177303, intron 1 of 8)	4282.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-17732217-3	chr18	17731719	17732719	+	993.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-151229.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57262505-6	chr9	57261994	57262994	+	993.380981	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028820, exon 1 of 3)	5' UTR (NM_028820, exon 1 of 3)	105.0	NM_028820	74211.0	Mm.428905	NM_028820	ENSMUSG00000032300	1700017B05Rik	AA682102|D9Ertd278e	RIKEN cDNA 1700017B05 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88772018-2	chr5	88771518	88772518	+	993.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_007832, intron 2 of 6)	intron (NM_007832, intron 2 of 6)	7005.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87555216-4	chr1	87554690	87555690	+	993.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111314, intron 1 of 14)	MTE2a|LTR|ERVL-MaLR	18680.0	NM_001111314	53972.0	Mm.435439	NM_019867	ENSMUSG00000026259	Ngef	Tims2|ephexin	neuronal guanine nucleotide exchange factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46014732-4	chr19	46014238	46015238	+	993.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11260.0	NM_176785	20170.0	Mm.101110	NM_176785	ENSMUSG00000074811	Hps6	5330434M19Rik|BLOC2|ru	HPS6, biogenesis of lysosomal organelles complex 2 subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr8-82403218-4	chr8	82402696	82403696	+	993.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001254747)	promoter-TSS (NM_001254747)	-610.0	NM_008357	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	70.5	114.5	106.5	93.0	155.0	130.0
Merged-chr8-25099687-4	chr8	25099196	25100196	+	993.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 1 of 11)	intron (NM_031257, intron 1 of 11)	2115.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30870198-4	chr16	30869701	30870701	+	993.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR50|LTR|ERVL	211231.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8635613-4	chr15	8635129	8636129	+	993.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_148938, exon 10 of 10)	3' UTR (NM_148938, exon 10 of 10)	75178.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94381080-4	chr11	94380615	94381615	+	993.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	11861.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-41861181-4	chr15	41860692	41861692	+	993.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_130885)	TTS (NM_130885)	8528.0	NM_175456	223513.0	Mm.148913	NM_175456	ENSMUSG00000042895	Abra	C130068O12Rik|STARS	actin-binding Rho activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31525739-2	chr6	31525239	31526239	+	993.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013723, intron 4 of 7)	intron (NM_013723, intron 4 of 7)	38198.0	NM_013723	27205.0	Mm.89918	NM_013723	ENSMUSG00000025608	Podxl	AW121214|Ly102|PC|PCLP-1|Pclp1|Podxl1	podocalyxin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3135057-2	chr11	3134563	3135563	+	993.333374	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 27 of 32)	intron (NM_030207, intron 27 of 32)	11042.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72572077-4	chr8	72571573	72572573	+	993.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151663, exon 1 of 3)	non-coding (NR_151663, exon 1 of 3)	250.0	NM_001357279	74166.0	Mm.212927	NM_144534	ENSMUSG00000031791	Tmem38a	1110001E17Rik|AI413399|SPR-27|TRIC-A|mg33a	transmembrane protein 38A	protein-coding	25.5	46.5	51.0	18.0	59.0	50.0
Merged-chr8-66341012-3	chr8	66340521	66341521	+	993.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 4 of 7)	intron (NM_175188, intron 4 of 7)	-45280.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-30354945-4	chr6	30354463	30355463	+	993.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36057.0	NM_172735	232679.0	Mm.29780	NM_172735	ENSMUSG00000039130	Zc3hc1	1110054L24Rik|AU018540|AU019789|HSPC216|Nipa	zinc finger, C3HC type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40832509-3	chr19	40832014	40833014	+	993.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172839, intron 2 of 5)	MIR|SINE|MIR	1235.0	NM_172839	240665.0	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45456342-9	chr7	45455804	45456804	+	993.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_030678, exon 16 of 16)	3' UTR (NM_030678, exon 16 of 16)	3582.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9084162-3	chr4	9083664	9084664	+	993.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-185129.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0.0	0.5	2.5	0.0	0.0	1.5
Merged-chr13-51639026-4	chr13	51638497	51639497	+	993.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR6_Mm|LTR|ERV1	-6235.0	NM_025415	66197.0	Mm.222228	NM_025415	ENSMUSG00000062248	Cks2	1110038L14Rik|CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45338825-2	chr7	45338325	45339325	+	993.3333130000001	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029741)	TTS (NM_029741)	3556.0	NM_010473	15464.0	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35683990-4	chr7	35683499	35684499	+	993.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36517.0	NM_019746	56330.0	Mm.371609	NM_019746	ENSMUSG00000030417	Pdcd5	2200003D22Rik|AA408513|Tfar19	programmed cell death 5	protein-coding	3.5	0.0	3.0	0.0	8.5	5.5
Merged-chr8-33653113-3	chr8	33652615	33653615	+	993.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010344)	promoter-TSS (NM_010344)	-123.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	370.5	610.5	616.0	76.5	154.0	154.5
Merged-chr8-117054308-4	chr8	117053810	117054810	+	993.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 14 of 42)	intron (NM_029686, intron 14 of 42)	28139.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81354954-2	chr10	81354454	81355454	+	993.3000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2537.0	NM_028657	73822.0	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1|gr	major facilitator superfamily domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118927161-2	chr9	118926679	118927679	+	993.2999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_133710, intron 1 of 7)	intron (NM_133710, intron 1 of 7)	643.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0.0	0.0	1.5	1.5	0.0	0.5
Merged-chr15-103361535-4	chr15	103361023	103362023	+	993.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001314041, intron 1 of 30)	intron (NM_001314041, intron 1 of 30)	5268.0	NM_010577	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-59556326-4	chr14	59555833	59556833	+	993.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41626.0	NM_001168537	71891.0	Mm.439850	NM_027986	ENSMUSG00000021982	Cdadc1	2310010M10Rik|AI449174|AI463398|BB130816|NYD-SP15	cytidine and dCMP deaminase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31887728-4	chr5	31887225	31888225	+	993.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 6 of 11)	intron (NM_144541, intron 6 of 11)	189675.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6087403-4	chr15	6086902	6087902	+	993.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-42698.0	NR_155429	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34239892-4	chr17	34239410	34240410	+	993.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010389, intron 1 of 5)	intron (NM_010389, intron 1 of 5)	1005.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	149.0	303.5	171.0	27.5	75.5	51.0
Merged-chr10-87805943-4	chr10	87805454	87806454	+	993.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52311.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr6-91705756-4	chr6	91705255	91706255	+	993.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	21688.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53283149-3	chr15	53282635	53283635	+	993.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	63048.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96221526-4	chr3	96221032	96222032	+	993.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175662)	promoter-TSS (NM_175662)	460.0	NM_178214	319190.0	Mm.439791	NM_178214	ENSMUSG00000068854	Hist2h2be	AV127319|H2b-613|T25626	histone cluster 2, H2be	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74362078-4	chr1	74361589	74362589	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033345)	promoter-TSS (NM_001033345)	-19.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164864586-2	chr2	164864086	164865086	+	993.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-6878.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	10.5	16.5	6.5	8.0	18.0	3.0
Merged-chr5-3501287-4	chr5	3500792	3501792	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-42541.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	10.0	15.5	3.0	10.5	16.5	8.5
Merged-chr16-55820337-4	chr16	55819837	55820837	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159395, intron 2 of 12)	intron (NM_001159395, intron 2 of 12)	1801.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46184909-4	chr18	46184458	46185458	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178872, intron 4 of 9)	MTD|LTR|ERVL-MaLR	13860.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	32.5	68.0	53.5	26.0	23.0	21.5
Merged-chr5-3430694-4	chr5	3430207	3431207	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 4 of 7)	intron (NM_009873, intron 4 of 7)	86814.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-127978237-4	chr1	127977736	127978736	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 12 of 20)	intron (NM_001285945, intron 12 of 20)	109463.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35038509-4	chr9	35038015	35039015	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78213.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79842319-4	chr3	79841835	79842835	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027495, intron 1 of 11)	intron (NM_027495, intron 1 of 11)	327.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	45.5	102.0	80.0	37.0	59.0	55.5
Merged-chr13-32903433-4	chr13	32902929	32903929	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT-int|LTR|ERVL-MaLR	-5289.0	NM_173051	380839.0	Mm.250802	NM_173051	ENSMUSG00000079049	Serpinb1c	EIC|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1c	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91874852-2	chr1	91874352	91875352	+	993.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73391.0	NM_007855	13345.0	Mm.9474	NM_007855	ENSMUSG00000007805	Twist2	Dermo1|bHLHa39	twist basic helix-loop-helix transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	2.5
Merged-chr7-100176504-4	chr7	100175997	100176997	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190869)	promoter-TSS (NM_001190869)	-173.0	NM_001190869	57442.0	Mm.282386	NM_020574	ENSMUSG00000035165	Kcne3	2210017H05Rik|MiRP2	potassium voltage-gated channel, Isk-related subfamily, gene 3	protein-coding	2.0	6.0	1.5	4.5	10.5	6.5
Merged-chr17-57436056-2	chr17	57435556	57436556	+	993.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 12 of 22)	L1Md_F2|LINE|L1	77370.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40590634-2	chr19	40590134	40591134	+	993.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2171.0	NM_153554	56454.0	Mm.233117	NM_019698	ENSMUSG00000025007	Aldh18a1	2810433K04Rik|AI429789|Pycs	aldehyde dehydrogenase 18 family, member A1	protein-coding	9.5	2.5	0.0	1.0	0.0	0.0
Merged-chr9-111563491-4	chr9	111563026	111564026	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016853, intron 10 of 10)	intron (NM_016853, intron 10 of 10)	124445.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	19.0	27.5	40.5	23.5	20.5	20.5
Merged-chr5-36515328-4	chr5	36514818	36515818	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 7 of 13)	intron (NM_133910, intron 7 of 13)	15305.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	3.0	0.0	9.0	4.5	2.5	3.5
Merged-chr17-88435880-4	chr17	88435375	88436375	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4829.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr8-108714568-8	chr8	108714074	108715074	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007496)	promoter-TSS (NM_007496)	-70.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-24400344-4	chr8	24399855	24400855	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38591.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr12-72362091-7	chr12	72361589	72362589	+	993.238098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153457, intron 1 of 8)	intron (NM_153457, intron 1 of 8)	46965.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96273741-3	chr3	96273224	96274224	+	993.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4024.0	NM_175666	319189.0	Mm.297655	NM_175666	ENSMUSG00000105827	Hist2h2bb	H2b-616	histone cluster 2, H2bb	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108847720-3	chr8	108847209	108848209	+	993.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 3 of 9)	intron (NM_007496, intron 3 of 9)	-89151.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	13.0	56.0	23.5	10.0	13.0	11.0
Merged-chr1-9597581-3	chr1	9597081	9598081	+	993.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015470, intron 3 of 4)	L1_Mus3|LINE|L1	-3686.0	NM_178399	76982.0	Mm.491098	NM_178399	ENSMUSG00000067879	3110035E14Rik	AI415019|AV164974|R75066	RIKEN cDNA 3110035E14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-86118797-4	chr5	86118287	86119287	+	993.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172712, intron 31 of 32)	URR1B|DNA|hAT-Charlie	47041.0	NM_001310639	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	99.0	232.5	159.0	40.5	149.5	113.0
Merged-chr5-115279803-4	chr5	115279381	115280381	+	993.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026504, exon 1 of 7)	exon (NM_026504, exon 1 of 7)	179.0	NM_026504	52064.0	Mm.290142	NM_026504	ENSMUSG00000041733	Coq5	1810014G04Rik|D5Ertd33e	coenzyme Q5 methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82898913-4	chr15	82898416	82899416	+	993.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027799)	promoter-TSS (NR_027799)	-164.0	NR_045068	100504637.0	Mm.440928	NR_045068	ENSMUSG00000100199	Gm20324	-	predicted gene, 20324	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151338422-4	chr1	151337907	151338907	+	993.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6079.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120800239-4	chr11	120799734	120800734	+	993.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3839.0	NM_026824	68730.0	Mm.180622	NM_026824	ENSMUSG00000025155	Dus1l	1110032N12Rik	dihydrouridine synthase 1-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83475690-4	chr6	83475181	83476181	+	993.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19289.0	NM_001347313	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	14.5	13.5	9.0	4.0	11.5	6.0
Merged-chr1-172364814-4	chr1	172364286	172365286	+	993.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	-11745.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	11.5	47.5	37.5	14.5	34.0	29.5
Merged-chr13-52189720-4	chr13	52189198	52190198	+	993.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	92957.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-39968206-3	chr15	39967677	39968677	+	993.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045719)	TTS (NR_045719)	5528.0	NR_045719	105976.0	Mm.394885	NR_045719		AU022793	-	expressed sequence AU022793	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73055049-2	chr2	73054549	73055549	+	993.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74603.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138996125-6	chr5	138995559	138996559	+	993.194458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-11694	-1106.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100639134-4	chr5	100638624	100639624	+	993.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35132.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	12.5	18.5	8.5	13.0	11.0	7.0
Merged-chr3-41366991-1	chr3	41366491	41367491	+	993.1666869999999	f0_balb.idr	Intergenic	Intergenic	126208.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0.0	0.0	2.5	5.0	7.0	9.0
Merged-chr6-66958679-4	chr6	66958182	66959182	+	993.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177560, intron 3 of 4)	intron (NM_001177560, intron 3 of 4)	61791.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44480316-4	chr9	44479791	44480791	+	993.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2534.0	NM_001357490	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-77270898-4	chr12	77270389	77271389	+	993.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045554, intron 1 of 11)	MTD|LTR|ERVL-MaLR	32150.0	NR_045554	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182378577-4	chr1	182378087	182379087	+	993.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30580.0	NM_173378	209456.0	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120441932-3	chr8	120441436	120442436	+	993.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46930.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-40580505-4	chr8	40580026	40581026	+	993.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040699, intron 7 of 13)	intron (NM_001040699, intron 7 of 13)	54266.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	2.0	15.5	6.0	0.0	16.0	7.0
Merged-chr17-67193920-4	chr17	67193433	67194433	+	993.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	160526.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	16.5	12.0	17.5	7.5	21.5	16.0
Merged-chr9-106310047-4	chr9	106309519	106310519	+	993.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 9 of 10)	intron (NM_027354, intron 9 of 10)	28958.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	34.5	128.0	63.0	85.5	91.5	100.5
Merged-chr13-47193900-4	chr13	47193411	47194411	+	993.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170643)	promoter-TSS (NM_001170643)	-92.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97858629-3	chr15	97858161	97859161	+	993.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009504, intron 9 of 9)	intron (NM_009504, intron 9 of 9)	-14159.0	NM_001204278	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57585164-4	chr9	57584660	57585660	+	993.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022813, intron 7 of 8)	RSINE1|SINE|B4	-4292.0	NM_027895	71742.0	Mm.155877	NM_027895	ENSMUSG00000032308	Ulk3	1200015E14Rik	unc-51-like kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80623352-2	chr18	80622852	80623852	+	993.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 9 of 9)	intron (NM_198429, intron 9 of 9)	-78806.0	NR_028424	100039348.0	Mm.254722	NR_028424		Gm2176	A430076E10Rik	glucosamine-6-phosphate deaminase 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3745609-4	chr12	3745112	3746112	+	993.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 12 of 17)	intron (NM_001162465, intron 12 of 17)	-61368.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-33878404-4	chr1	33877919	33878919	+	993.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177235, exon 3 of 7)	exon (NM_177235, exon 3 of 7)	29202.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117465457-4	chr8	117464945	117465945	+	993.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6180.0	NR_106046	102465653.0		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118913234-4	chr9	118912737	118913737	+	993.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13299.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	14.5	19.5	14.0	15.5	34.5	6.5
Merged-chr17-10702984-4	chr17	10702488	10703488	+	993.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	137203.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59266269-4	chr10	59265774	59266774	+	993.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C2|LTR|ERVK	44352.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129810421-4	chr4	129809934	129810934	+	993.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10045.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	129.0	316.5	274.5	151.0	338.0	237.0
Merged-chr11-46039547-4	chr11	46039058	46040058	+	993.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14944.0	NM_001291890	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	1.0	16.5	7.0	2.0	10.5	4.0
Merged-chr6-124740470-4	chr6	124739977	124740977	+	993.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013535, intron 2 of 2)	intron (NM_013535, intron 2 of 2)	602.0	NM_013535	14790.0	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173880321-4	chr1	173879850	173880850	+	993.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170853)	promoter-TSS (NM_001170853)	-163.0	NM_001170853	100040462.0	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	45.0	113.5	60.0	69.0	113.0	70.5
Merged-chr3-126945055-3	chr3	126944552	126945552	+	993.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001327939, exon 37 of 46)	exon (NM_001327939, exon 37 of 46)	-1666.0	NM_001034168	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	28.0	21.5	22.5	4.0	7.0	1.0
Merged-chr7-73557905-3	chr7	73557417	73558417	+	993.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037569, intron 1 of 4)	CpG	478.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27234949-3	chr15	27234434	27235434	+	993.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-231743.0	NM_020332	11732.0	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104251319-3	chr8	104250828	104251828	+	993.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037841, intron 1 of 2)	intron (NM_001037841, intron 1 of 2)	467.0	NM_001286383	75458.0	Mm.269219	NM_029295	ENSMUSG00000054400	Cklf	1700001C14Rik|1810018M11Rik|A730028G07Rik|C32|CKLF1|CKLF3|CKLF4|CKLF5|Cklf2|Cklf6|HSPC224|UCK-1	chemokine-like factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-47368930-3	chr18	47368420	47369420	+	993.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018744)	promoter-TSS (NM_018744)	-50.0	NM_001311097	20358.0	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-40994080-4	chr8	40993527	40994527	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 13 of 13)	B1_Mus1|SINE|Alu	-23441.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	14.5	48.5	27.0	22.5	52.0	23.5
Merged-chr1-161252019-4	chr1	161251522	161252522	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007453)	promoter-TSS (NM_007453)	-812.0	NM_001303408	11758.0	Mm.186185	NM_007453	ENSMUSG00000026701	Prdx6	1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2	peroxiredoxin 6	protein-coding	32.0	7.5	15.5	11.0	6.0	8.5
Merged-chr15-59525948-4	chr15	59525440	59526440	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-122714.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73173866-4	chr14	73173371	73174371	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001170694, exon 11 of 15)	exon (NM_001170694, exon 11 of 15)	31086.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-79696733-4	chr7	79696250	79697250	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029835, exon 22 of 22)	exon (NM_029835, exon 22 of 22)	17436.0	NM_010626	16576.0	Mm.101633	NM_010626	ENSMUSG00000050382	Kif7	-	kinesin family member 7	protein-coding	29.5	17.5	25.5	10.0	10.5	30.0
Merged-chr10-99190958-4	chr10	99190436	99191436	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	B3|SINE|B2	-72295.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81997369-4	chr10	81996863	81997863	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-50760.0	NM_001319203	408062.0	Mm.391409	NM_001024626	ENSMUSG00000061371	Zfp873	-	zinc finger protein 873	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128729917-4	chr4	128729421	128730421	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195083, intron 1 of 6)	intron (NM_001195083, intron 1 of 6)	2350.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	3.5	64.5	57.0	9.0	58.0	43.0
Merged-chr17-46524231-4	chr17	46523743	46524743	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081335, intron 16 of 40)	intron (NM_001081335, intron 16 of 40)	22145.0	NM_001081335	78309.0	Mm.329076	NM_001081335	ENSMUSG00000040327	Cul9	1810035I07Rik|Cul-9|Parc|mKIAA0708	cullin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191115810-6	chr1	191115281	191116281	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	17367.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	124.5	274.5	207.5	131.5	255.5	188.0
Merged-chr17-35241120-4	chr17	35240632	35241632	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019693)	promoter-TSS (NM_019693)	-614.0	NM_019693	53817.0	Mm.439827	NM_019693	ENSMUSG00000019432	Ddx39b	0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	protein-coding	97.0	168.0	108.5	132.5	176.5	128.0
Merged-chr9-42908918-4	chr9	42908419	42909419	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175481, intron 1 of 20)	intron (NM_175481, intron 1 of 20)	35452.0	NM_175481	110637.0	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84466618-4	chr15	84466113	84467113	+	993.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19516.0	NM_001163145	72301.0	Mm.275387	NM_001163145	ENSMUSG00000062760	1810041L15Rik	Kiaa1644|Shisal1	RIKEN cDNA 1810041L15 gene	protein-coding	0.0	2.5	0.0	0.0	1.0	0.0
Merged-chr8-125543341-3	chr8	125542802	125543802	+	993.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	26561.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	2.5	12.5	2.5	9.0	14.0	10.5
Merged-chr6-31123564-4	chr6	31123078	31124078	+	993.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-60485.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23518170-4	chr13	23517659	23518659	+	993.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Ser-TCA_|tRNA|tRNA	-12885.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161560537-4	chr1	161560041	161561041	+	993.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	65884.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43089716-4	chr17	43089231	43090231	+	993.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178589)	TTS (NM_178589)	68560.0	NR_045155	545207.0	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	4.0	13.5	13.0	31.5	130.5	84.0
Merged-chr15-59614385-4	chr15	59613884	59614884	+	993.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34270.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	92.0	200.5	137.5	79.5	204.0	135.0
Merged-chr14-121929104-4	chr14	121928605	121929605	+	993.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 4 of 8)	intron (NM_026861, intron 4 of 8)	-13331.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	138.0	320.5	225.0	109.5	279.0	172.5
Merged-chr11-69041090-4	chr11	69040590	69041590	+	993.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4547.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-122421268-2	chr9	122420768	122421768	+	993.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22467.0	NR_045967	654800.0	Mm.393956	NR_045967		A730085K08Rik	-	RIKEN cDNA A730085K08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100501845-2	chr7	100501380	100502380	+	993.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	8522.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	14.0	37.0	25.0	0.0	10.5	1.5
Merged-chr16-3894931-4	chr16	3894450	3895450	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_153801)	TTS (NR_153801)	10331.0	NM_001290689	74763.0	Mm.28403	NM_029090	ENSMUSG00000005982	Naa60	1200013P24Rik|AI315146|HAT4|Nat15|NatF	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50030109-4	chr6	50029622	50030622	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80119.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	0.0	1.5	0.0	0.0	1.5	0.0
Merged-chr7-27197158-2	chr7	27196658	27197658	+	993.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015782)	promoter-TSS (NM_015782)	-887.0	NM_001285825	53607.0	Mm.386890	NM_015782	ENSMUSG00000061479	Snrpa	C430021M15Rik|Rnu1a-1|Rnu1a1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-95663188-2	chr1	95662688	95663688	+	993.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159745, intron 1 of 3)	intron (NM_001159745, intron 1 of 3)	4406.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101693171-2	chr13	101692671	101693671	+	993.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024955)	promoter-TSS (NM_001024955)	-541.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96710789-2	chr15	96710289	96711289	+	993.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11061.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145866739-4	chr6	145866232	145867232	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1312.0	NM_001271768	79362.0	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21564050-4	chr11	21563537	21564537	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316675, intron 4 of 8)	intron (NM_001316675, intron 4 of 8)	7897.0	NM_008618	17449.0	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	23.5	11.5	3.0	24.0	16.5	21.0
Merged-chr4-47502830-2	chr4	47502330	47503330	+	993.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28169.0	NM_024171	66212.0	Mm.20188	NM_024171	ENSMUSG00000053317	Sec61b	1190006C12Rik|AI326121|AW122942	Sec61 beta subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-86544749-4	chr9	86544250	86545250	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177208, intron 33 of 38)	intron (NM_177208, intron 33 of 38)	27092.0	NM_001163746	109785.0	Mm.390201	NM_028352	ENSMUSG00000056131	Pgm3	2810473H05Rik|Agm1|BB187688|C77933|PAGM|Pgm-3	phosphoglucomutase 3	protein-coding	0.0	9.0	0.0	0.0	5.5	7.5
Merged-chr17-34199090-2	chr17	34198590	34199590	+	993.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010724, intron 1 of 5)	intron (NM_010724, intron 1 of 5)	895.0	NM_010724	16913.0	Mm.180191	NM_010724	ENSMUSG00000024338	Psmb8	Lmp-7|Lmp7	proteasome (prosome, macropain) subunit, beta type 8 (large multifunctional peptidase 7)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98586703-2	chr11	98586203	98587203	+	993.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025661, intron 1 of 3)	intron (NM_025661, intron 1 of 3)	542.0	NM_025661	66612.0	Mm.180546	NM_025661	ENSMUSG00000038150	Ormdl3	2810011N17Rik|AI315223	ORM1-like 3 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-45856171-4	chr5	45855664	45856664	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359873, intron 1 of 4)	intron (NM_001359873, intron 1 of 4)	388.0	NM_001359872	209707.0	Mm.71498	NM_172153	ENSMUSG00000015882	Lcorl	Mlr1	ligand dependent nuclear receptor corepressor-like	protein-coding	17.5	31.5	43.0	30.5	63.5	46.0
Merged-chr4-32518525-1	chr4	32518025	32519025	+	993.0	f0_balb.idr	intron (NM_001109661, intron 2 of 4)	L2a|LINE|L2	53137.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26563793-1	chr17	26563293	26564293	+	993.0	f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	2281.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	2.0	0.0	0.0	0.0	0.0	1.0
Merged-chr6-83268380-4	chr6	83267877	83268877	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001166067, exon 10 of 25)	exon (NM_001166067, exon 10 of 25)	31002.0	NM_001166067	232156.0	Mm.333189	NM_001166067	ENSMUSG00000068323	Slc4a5	C330006M16|C330016K18Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79802588-4	chr10	79802090	79803090	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023128, intron 1 of 8)	MIR|SINE|MIR	9018.0	NM_001161747	18483.0	Mm.34650	NM_023128	ENSMUSG00000035863	Palm	-	paralemmin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31389256-2	chr14	31388756	31389756	+	993.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	MER33|DNA|hAT-Charlie	28421.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111930932-2	chr12	111930432	111931432	+	993.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13550.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44930221-4	chr19	44929732	44930732	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081225)	promoter-TSS (NM_001081225)	-887.0	NM_172638	226151.0	Mm.212609	NM_172638	ENSMUSG00000036097	Slf2	3632432H19|Fam178a	SMC5-SMC6 complex localization factor 2	protein-coding	1.5	1.0	1.5	0.0	2.5	0.5
Merged-chr14-70931110-3	chr14	70930635	70931635	+	993.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	41028.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	11.5	13.5	18.0	9.5	24.0	13.0
Merged-chr17-13945430-4	chr17	13944901	13945901	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2972.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126153063-4	chr4	126152569	126153569	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025856, intron 6 of 11)	intron (NM_025856, intron 6 of 11)	5066.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-72199975-7	chr4	72199540	72200540	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001285529, exon 1 of 20)	5' UTR (NM_001285529, exon 1 of 20)	853.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78881949-2	chr15	78881449	78882449	+	993.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145929, intron 2 of 16)	intron (NM_145929, intron 2 of 16)	4759.0	NM_145929	106039.0	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	0.0	3.0	0.5	0.0	5.5	1.0
Merged-chr7-28373865-3	chr7	28373342	28374342	+	993.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1180.0	NM_001083912	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118612889-2	chr9	118612389	118613389	+	993.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	B4|SINE|B4	6180.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31096308-1	chr5	31095808	31096808	+	993.0	f1_balb.idr	intron (NM_001347323, intron 1 of 8)	intron (NM_001347323, intron 1 of 8)	-2781.0	NM_011773	22784.0	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	0.0	13.5	3.5	0.0	4.5	10.5
Merged-chr8-46837201-4	chr8	46836696	46837696	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008391, intron 6 of 8)	intron (NM_008391, intron 6 of 8)	97451.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127603170-2	chr10	127602664	127603664	+	993.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	17984.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	53.0	129.0	61.5	53.5	122.0	62.5
Merged-chr2-29744720-2	chr2	29744220	29745220	+	993.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16808.0	NM_001177392	433416.0	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	-	predicted gene 13547	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128488129-2	chr10	128487629	128488629	+	993.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001114097, exon 27 of 28)	exon (NM_001114097, exon 27 of 28)	4880.0	NM_001317220	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84217649-4	chr12	84217155	84218155	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	1226.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83170946-2	chr15	83170446	83171446	+	993.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029787, intron 1 of 8)	intron (NM_029787, intron 1 of 8)	1262.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63569085-2	chr9	63568585	63569585	+	993.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030068, intron 5 of 21)	intron (NM_030068, intron 5 of 21)	33408.0	NM_030068	78250.0	Mm.444612	NM_030068	ENSMUSG00000037801	Iqch	4921504K03Rik	IQ motif containing H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135572578-2	chr5	135572078	135573078	+	993.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_019577, exon 2 of 3)	exon (NM_019577, exon 2 of 3)	471.0	NM_019577	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	0.0	0.0	0.0	2.0	3.5	1.0
Merged-chr10-44383728-2	chr10	44383228	44384228	+	993.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	24052.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-127206346-5	chr1	127205852	127206852	+	992.9933470000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	1366.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	6.5	26.0	21.0	6.0	13.5	14.5
Merged-chr15-72838434-4	chr15	72837924	72838924	+	992.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164641, intron 17 of 17)	MTEa|LTR|ERVL-MaLR	-28100.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	20.0	61.0	45.5	32.5	40.5	26.5
Merged-chr13-83066476-4	chr13	83065945	83066945	+	992.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-368112.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	26.5	33.0	18.5	10.0	32.0	14.5
Merged-chr10-19548218-4	chr10	19547719	19548719	+	992.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-43730.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-119396418-4	chr6	119395932	119396932	+	992.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197985, intron 1 of 7)	intron (NM_197985, intron 1 of 7)	-7698.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0.0	0.0	0.0	1.0	0.5	2.0
Merged-chr5-65136386-4	chr5	65135884	65136884	+	992.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359401, intron 1 of 5)	intron (NM_001359401, intron 1 of 5)	5153.0	NM_175174	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-60632778-4	chr8	60632281	60633281	+	992.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027756)	promoter-TSS (NM_027756)	-44.0	NM_027756	71306.0	Mm.23242	NM_027756	ENSMUSG00000031647	Mfap3l	4933428A15Rik|5430405D20Rik|AI461995|AW125052|NYD-sp9|mKIAA0626	microfibrillar-associated protein 3-like	protein-coding	3.5	4.0	0.0	6.0	0.0	0.0
Merged-chr18-82912274-4	chr18	82911769	82912769	+	992.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183033, intron 1 of 5)	intron (NM_183033, intron 1 of 5)	1390.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149697922-4	chr4	149697398	149698398	+	992.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008840, intron 1 of 24)	intron (NM_008840, intron 1 of 24)	810.0	NM_001164050	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	58.5	227.5	168.0	71.0	216.5	136.0
Merged-chr4-120925837-4	chr4	120925260	120926260	+	992.9285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160043)	promoter-TSS (NM_001160043)	-755.0	NM_001160043	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43502017-7	chr1	43501523	43502523	+	992.9285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	56272.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34046567-4	chr13	34046069	34047069	+	992.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026512, intron 2 of 6)	intron (NM_026512, intron 2 of 6)	8928.0	NM_026512	68021.0	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-149831287-4	chr1	149830791	149831791	+	992.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 17 of 17)	intron (NM_008869, intron 17 of 17)	91148.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87299172-4	chr17	87298676	87299676	+	992.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 3 of 19)	intron (NM_028639, intron 3 of 19)	16290.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-126610104-4	chr3	126609612	126610612	+	992.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	13161.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	14.5	23.5	18.0	16.5	26.5	26.5
Merged-chr11-8579519-4	chr11	8579022	8580022	+	992.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 3 of 30)	intron (NM_001083587, intron 3 of 30)	85013.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	127.5	236.5	202.5	129.5	295.5	234.5
Merged-chr19-41331790-4	chr19	41331190	41332190	+	992.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 3 of 16)	intron (NM_031376, intron 3 of 16)	53380.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	76.0	215.5	146.0	70.5	175.0	51.5
Merged-chr11-17258060-4	chr11	17257555	17258555	+	992.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330649, intron 1 of 4)	ID_B1|SINE|B4	367.0	NM_001330649	57316.0	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-34696956-4	chr12	34696431	34697431	+	992.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-168042.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	38.5	88.0	66.0	39.5	91.5	65.0
Merged-chr9-110873486-2	chr9	110872942	110873942	+	992.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146260, intron 3 of 5)	intron (NM_146260, intron 3 of 5)	6641.0	NM_146260	20776.0	Mm.390229	NM_146260	ENSMUSG00000049555	Tmie	5131400L21Rik|Mm.87012|sr	transmembrane inner ear	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81536091-5	chr15	81535618	81536618	+	992.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50096.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	35.5	39.5	28.0	21.0	38.5	19.5
Merged-chr5-110603431-4	chr5	110602836	110603836	+	992.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122639)	promoter-TSS (NM_001122639)	-169.0	NM_001122639	231605.0	Mm.275748	NM_198306	ENSMUSG00000033316	Galnt9	GalNAc-T9	polypeptide N-acetylgalactosaminyltransferase 9	protein-coding	0.0	0.0	0.5	0.0	0.5	1.0
Merged-chr5-44049532-4	chr5	44049036	44050036	+	992.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163578, intron 3 of 22)	intron (NM_001163578, intron 3 of 22)	45232.0	NM_001163581	19126.0	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72899248-8	chr6	72898722	72899722	+	992.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347231)	promoter-TSS (NM_001347231)	70.0	NM_001347231	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-79786861-4	chr17	79786375	79787375	+	992.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-71834.0	NM_009994	13078.0	Mm.214016	NM_009994	ENSMUSG00000024087	Cyp1b1	CP1B|P4501b1	cytochrome P450, family 1, subfamily b, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-109441642-4	chr13	109441142	109442142	+	992.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	116898.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	2.5	1.5	4.5	0.0	6.5	1.5
Merged-chr1-84363045-4	chr1	84362548	84363548	+	992.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78403.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36436794-4	chr1	36436296	36437296	+	992.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310517, intron 4 of 8)	L1MB7|LINE|L1	8475.0	NM_001013374	214895.0	Mm.287854	NM_001013374	ENSMUSG00000001143	Lman2l	A630028F14Rik|VIP36-like|VIPL	lectin, mannose-binding 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3237385-4	chr12	3236878	3237878	+	992.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015551, exon 2 of 7)	non-coding (NR_015551, exon 2 of 7)	1587.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86185077-5	chr15	86184601	86185601	+	992.8666380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155352)	promoter-TSS (NR_155352)	-627.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165667615-4	chr1	165667113	165668113	+	992.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	-33072.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-131921192-3	chr4	131920678	131921678	+	992.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001201367)	promoter-TSS (NM_001201367)	-593.0	NM_001201367	623230.0	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-54681777-4	chr3	54681259	54682259	+	992.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-11056.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	2.5	13.5	13.5	12.0	14.5	15.5
Merged-chr1-36271665-4	chr1	36271175	36272175	+	992.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153408, intron 1 of 3)	intron (NM_153408, intron 1 of 3)	1750.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53124215-2	chr4	53123715	53124715	+	992.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	35680.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99432508-3	chr7	99432010	99433010	+	992.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362168, intron 4 of 17)	MIR|SINE|MIR	-33494.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	3.0	0.0	0.0	0.0	0.0	6.5
Merged-chr3-108563402-5	chr3	108562839	108563839	+	992.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026198)	promoter-TSS (NM_026198)	-873.0	NM_026198	67495.0	Mm.32615	NM_026198	ENSMUSG00000068732	Tmem167b	2010200O16Rik	transmembrane protein 167B	protein-coding	19.5	48.0	46.0	12.0	67.5	45.0
Merged-chr1-62701211-4	chr1	62700719	62701719	+	992.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2098.0	NM_001077406	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55497488-4	chr14	55496972	55497972	+	992.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155104, intron 17 of 38)	intron (NR_155104, intron 17 of 38)	6402.0	NR_155104	268747.0	Mm.151577	NM_001024645	ENSMUSG00000022211	Carmil3	Lrrc16b|mFLJ00240	capping protein regulator and myosin 1 linker 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60358901-4	chr13	60358399	60359399	+	992.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153428.0	NR_036449	100503759.0	Mm.38101	NM_177810	ENSMUSG00000050765	Gm5084	A030007L22|EG328264	predicted gene 5084	ncRNA	9.0	20.0	26.0	20.5	14.0	15.5
Merged-chr5-67297222-4	chr5	67296704	67297704	+	992.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9751.0	NM_178651	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	57.0	122.0	65.5	31.5	135.0	75.5
Merged-chr16-22124470-3	chr16	22123994	22124994	+	992.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	38805.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-30574744-3	chr17	30574239	30575239	+	992.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172618, intron 1 of 11)	intron (NM_172618, intron 1 of 11)	1548.0	NM_172618	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	38.0	137.0	69.0	28.0	52.0	35.5
Merged-chr16-50061936-4	chr16	50061467	50062467	+	992.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045935, intron 1 of 3)	L1_Mus2|LINE|L1	10885.0	NR_045935	224180.0	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-35152711-4	chr15	35152213	35153213	+	992.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357821, intron 1 of 11)	intron (NM_001357821, intron 1 of 11)	3093.0	NM_001357821	56274.0	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7218147-4	chr19	7217658	7218658	+	992.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007750)	promoter-TSS (NM_007750)	-542.0	NM_007750	12868.0	Mm.14022	NM_007750	ENSMUSG00000035885	Cox8a	COX8L	cytochrome c oxidase subunit VIIIa	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91838928-2	chr16	91838428	91839428	+	992.8000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 17 of 28)	B3|SINE|B2	92702.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53494676-5	chr11	53494179	53495179	+	992.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14484.0	NM_183173	237761.0	Mm.145208	NM_183173	ENSMUSG00000044352	Sowaha	A830006N08Rik|Ankrd43	sosondowah ankyrin repeat domain family member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57276165-2	chr17	57275665	57276665	+	992.7999880000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2935.0	NM_001163816	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66915599-4	chr9	66915094	66916094	+	992.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	4111.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-28430859-6	chr6	28430348	28431348	+	992.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019569, intron 2 of 6)	MTD|LTR|ERVL-MaLR	2947.0	NM_019569	56223.0	Mm.31708	NM_019569	ENSMUSG00000029707	Fscn3	-	fascin actin-bundling protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-60615505-7	chr3	60615005	60616005	+	992.7551269999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 5 of 7)	intron (NM_001253711, intron 5 of 7)	114326.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	17.0	41.0	17.5	2.5	7.0	6.0
Merged-chr2-27266093-4	chr2	27265638	27266638	+	992.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 29 of 29)	L1MEg|LINE|L1	-18835.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150779372-4	chr2	150778868	150779868	+	992.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-7428.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-162000014-4	chr1	161999512	162000512	+	992.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038619, intron 20 of 20)	intron (NM_001038619, intron 20 of 20)	-4957.0	NR_040562	72753.0	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA	18.5	75.5	51.5	32.5	68.5	60.5
Merged-chr8-125721811-2	chr8	125721311	125722311	+	992.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-12392.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136965309-4	chr6	136964812	136965812	+	992.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10789.0	NM_023898	78600.0	Mm.290622	NM_023898	ENSMUSG00000064330	Pde6h	A930033D18Rik|PDEgamma	phosphodiesterase 6H, cGMP-specific, cone, gamma	protein-coding	43.5	90.0	68.0	18.0	77.0	48.0
Merged-chr3-132744877-4	chr3	132744356	132745356	+	992.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163455, intron 20 of 25)	intron (NM_001163455, intron 20 of 25)	60712.0	NM_001163455	271981.0	Mm.257864	NM_173032	ENSMUSG00000028030	Tbck	1700120J03Rik|9430001M19|A630047E20Rik|C030007I09Rik|Tbckl	TBC1 domain containing kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36707164-2	chr16	36706664	36707664	+	992.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 1 of 7)	intron (NM_001285788, intron 1 of 7)	13186.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-104948143-3	chr13	104947642	104948642	+	992.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029879, exon 6 of 6)	3' UTR (NM_029879, exon 6 of 6)	-84249.0	NM_029984	77803.0	Mm.159995	NM_029984	ENSMUSG00000042655	Fam159b	A930021C24Rik|Shisal2b	family with sequence similarity 159, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105862014-5	chr3	105861532	105862532	+	992.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8826.0	NM_027025	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	32.0	81.0	75.0	30.5	98.5	91.5
Merged-chr4-148583526-3	chr4	148583040	148584040	+	992.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-7973.0	NM_009272	20810.0	Mm.10	NM_009272	ENSMUSG00000006442	Srm	AA407669|SpdST|SpdSy	spermidine synthase	protein-coding	5.5	5.5	6.0	22.5	38.0	79.5
Merged-chr2-152437681-4	chr2	152437175	152438175	+	992.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110368, intron 6 of 10)	intron (NR_110368, intron 6 of 10)	22088.0	NR_110368	228778.0	Mm.70959	NM_177656	ENSMUSG00000032680	6820408C15Rik	-	RIKEN cDNA 6820408C15 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114722176-4	chr5	114721680	114722680	+	992.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029992, exon 13 of 13)	3' UTR (NM_029992, exon 13 of 13)	2665.0	NR_105995	102465622.0		NR_105995	ENSMUSG00000098656	Mir7028	Gm27674|mmu-mir-7028	microRNA 7028	ncRNA	0.0	0.0	7.5	6.0	13.5	5.5
Merged-chr11-86908046-4	chr11	86907564	86908564	+	992.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	85698.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26584607-4	chr17	26584096	26585096	+	992.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	23084.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	2.5	5.5	14.5	4.5	3.5	4.5
Merged-chr11-43383811-4	chr11	43383288	43384288	+	992.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-9327.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-113931668-4	chr9	113931181	113932181	+	992.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001083319, exon 2 of 17)	exon (NM_001083319, exon 2 of 17)	747.0	NM_013699	22221.0	Mm.28052	NM_013699	ENSMUSG00000009741	Ubp1	Cp2b|LBP-1a|LBP-1b|NF2d9	upstream binding protein 1	protein-coding	11.0	21.5	27.0	23.0	20.0	42.5
Merged-chr12-80814042-4	chr12	80813548	80814548	+	992.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	23516.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-78995328-4	chr2	78994822	78995822	+	992.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125644.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-85588743-4	chr6	85588240	85589240	+	992.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145223, intron 1 of 22)	intron (NM_145223, intron 1 of 22)	1209.0	NM_145223	236266.0	Mm.246967	NM_145223	ENSMUSG00000063810	Alms1	bbb	ALMS1, centrosome and basal body associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25801228-4	chr17	25800772	25801772	+	992.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4227.0	NM_133719	70083.0	Mm.41925	NM_133719	ENSMUSG00000002274	Metrn	1810034B16Rik|EyeLinc16|Hyrac	meteorin, glial cell differentiation regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98892365-4	chr15	98891857	98892857	+	992.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007857, exon 3 of 3)	3' UTR (NM_007857, exon 3 of 3)	6183.0	NM_007857	13363.0	Mm.324688	NM_007857	ENSMUSG00000023000	Dhh	C78960	desert hedgehog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103159192-4	chr11	103158685	103159685	+	992.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11953.0	NM_001077698	57778.0	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87652866-4	chr1	87652338	87653338	+	992.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	32526.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-50690486-4	chr10	50690003	50691003	+	992.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 14 of 41)	MTC|LTR|ERVL-MaLR	97834.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5815259-4	chr19	5814738	5815738	+	992.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12566.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134087587-3	chr4	134087087	134088087	+	992.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001162970, exon 15 of 20)	exon (NM_001162970, exon 15 of 20)	7486.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	0.0	1.0	4.0	0.0	2.0	0.0
Merged-chr18-12729017-4	chr18	12728510	12729510	+	992.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028341, intron 9 of 13)	intron (NM_028341, intron 9 of 13)	-12345.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101952931-4	chr11	101952419	101953419	+	992.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045806, intron 1 of 3)	intron (NR_045806, intron 1 of 3)	498.0	NR_045806	73887.0	Mm.159084	NR_045806	ENSMUSG00000071818	4930417O22Rik	-	RIKEN cDNA 4930417O22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18798928-4	chr2	18798445	18799445	+	992.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_131254)	TTS (NR_131254)	2873.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62092757-4	chr18	62092273	62093273	+	992.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87208.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	5.0	10.0	3.0	4.5	37.0	31.0
Merged-chr14-102843876-4	chr14	102843376	102844376	+	992.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	138756.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	2.0	0.0	0.0	8.0	3.0
Merged-chr11-116620518-2	chr11	116620018	116621018	+	992.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	3734.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	5.0	5.5	2.0	8.0	5.5	7.5
Merged-chr7-100128411-2	chr7	100127911	100128911	+	992.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6911.0	NM_133692	67967.0	Mm.37562	NM_133692	ENSMUSG00000030726	Pold3	2410142G14Rik|C85233|P66|P68	polymerase (DNA-directed), delta 3, accessory subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125472677-2	chr7	125472200	125473200	+	992.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360659, intron 2 of 7)	intron (NM_001360659, intron 2 of 7)	18842.0	NM_001360659	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	23.0	103.5	86.5	29.5	59.0	45.5
Merged-chr6-38353431-2	chr6	38352931	38353931	+	992.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028864, intron 1 of 8)	intron (NM_028864, intron 1 of 8)	1172.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97701085-2	chr11	97700585	97701585	+	992.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009545)	promoter-TSS (NM_009545)	-588.0	NM_009545	22658.0	Mm.2418	NM_009545	ENSMUSG00000018537	Pcgf2	Mel18|Rnf110|Zfp144|mel-18	polycomb group ring finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102375165-2	chr12	102374665	102375665	+	992.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 7 of 9)	intron (NM_177620, intron 7 of 9)	64648.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	3.5	1.0	4.0	5.0	3.0	0.5
Merged-chr5-105698843-4	chr5	105698391	105699391	+	992.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1078.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	18.0	63.5	39.0	33.0	75.5	49.5
Merged-chr12-104236097-4	chr12	104235586	104236586	+	992.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001353613)	promoter-TSS (NM_001353613)	-61.0	NM_001353612	20715.0	Mm.312628	NM_009251		Serpina3g	2A2|AI119734|Spi2-1|Spi2/eb.1|Spi2A|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3G	protein-coding	30.5	101.5	25.5	17.0	70.5	54.0
Merged-chr15-53566427-4	chr15	53565924	53566924	+	992.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177225, intron 4 of 4)	UCON29|DNA|PiggyBac?	47855.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-79743115-4	chr7	79742630	79743630	+	992.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037927)	promoter-TSS (NM_001037927)	1.0	NR_153403	18631.0	Mm.20615	NM_011068	ENSMUSG00000030545	Pex11a	PEX11alpha	peroxisomal biogenesis factor 11 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36711480-4	chr16	36710988	36711988	+	992.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 3 of 7)	intron (NM_001285788, intron 3 of 7)	17510.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-149692663-3	chr5	149692146	149693146	+	992.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081204, intron 1 of 14)	intron (NM_001081204, intron 1 of 14)	14389.0	NM_001081204	381694.0	Mm.45060	NM_001081204	ENSMUSG00000051950	B3glct	B3galtl|Gm1057	beta-3-glucosyltransferase	protein-coding	0.0	0.0	1.0	0.0	4.0	4.0
Merged-chr14-65890881-3	chr14	65890349	65891349	+	992.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53547.0	NM_145944	67179.0	Mm.214576	NM_145944	ENSMUSG00000022035	Ccdc25	2610528H13Rik|NSrp70	coiled-coil domain containing 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-99433352-6	chr13	99432837	99433837	+	992.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008634, exon 5 of 7)	exon (NM_008634, exon 5 of 7)	-20511.0	NR_015515	320893.0	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	1.0	18.0	14.0	16.0	20.0	26.5
Merged-chr5-73491930-6	chr5	73491444	73492444	+	992.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178896, intron 1 of 10)	CpG	918.0	NM_178896	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	25.5	78.0	37.5	9.0	56.0	28.0
Merged-chr16-30070539-9	chr16	30070050	30071050	+	992.607422	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	5193.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59680842-5	chr15	59680440	59681440	+	992.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32286.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50431766-4	chr16	50431274	50432274	+	992.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 1 of 16)	CpG	615.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93263661-3	chr10	93263123	93264123	+	992.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282967, intron 2 of 3)	intron (NM_001282967, intron 2 of 3)	47536.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	4.5	22.0	5.5	26.0	37.5	38.5
Merged-chr19-4257182-4	chr19	4256680	4257680	+	992.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6698.0	NR_105951	102465595.0		NR_105951	ENSMUSG00000099290	Mir6985	Gm27719|mmu-mir-6985	microRNA 6985	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46309188-4	chr19	46308675	46309675	+	992.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001177369, exon 14 of 23)	exon (NM_001177369, exon 14 of 23)	3245.0	NM_001177370	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.0	7.5	3.0	3.0	3.5	2.0
Merged-chr19-9122626-4	chr19	9122131	9123131	+	992.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025610, intron 2 of 6)	RLTR49|LTR|ERVK	12935.0	NM_025610	66514.0	Mm.272847	NM_025610	ENSMUSG00000024654	Asrgl1	2410004D18Rik|ALP|ALP1|AU040643|AW060375	asparaginase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135669999-4	chr1	135669503	135670503	+	992.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50060.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129375295-4	chr6	129374793	129375793	+	992.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001204223)	TTS (NM_001204223)	10210.0	NM_027709	71183.0	Mm.79402	NM_027709	ENSMUSG00000030158	Clec12b	4933425B16Rik	C-type lectin domain family 12, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98805572-4	chr7	98805070	98806070	+	992.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-29542.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	8.5	30.5	5.5	2.5	20.0	8.5
Merged-chr8-120509391-4	chr8	120508982	120509982	+	992.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	20616.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122398026-4	chr5	122397543	122398543	+	992.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019824, intron 2 of 6)	intron (NM_019824, intron 2 of 6)	6165.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-71805847-4	chr9	71805372	71806372	+	992.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34270.0	NM_001304362	68178.0	Mm.99961	NM_026599	ENSMUSG00000032232	Cgnl1	4933421H10Rik|9930020M10Rik|AI503810|Jacop	cingulin-like 1	protein-coding	0.0	1.0	0.5	0.0	0.0	0.0
Merged-chr9-32509907-3	chr9	32509391	32510391	+	992.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	31561.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-34020526-3	chr3	34020042	34021042	+	992.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113189, intron 1 of 16)	CpG	463.0	NM_001113189	14359.0	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	70.0	99.0	89.5	50.5	67.0	91.0
Merged-chr1-91252200-4	chr1	91251698	91252698	+	992.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355764, intron 1 of 10)	intron (NM_001355764, intron 1 of 10)	1632.0	NM_001355764	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	53.5	133.0	80.5	42.5	126.5	65.0
Merged-chr18-58563765-4	chr18	58563270	58564270	+	992.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081072, intron 1 of 9)	intron (NM_001081072, intron 1 of 9)	7530.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	12.0	10.5	7.0	13.0	8.0	5.0
Merged-chr16-65201480-4	chr16	65200974	65201974	+	992.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95690.0	NM_008310	15557.0	Mm.5040	NM_008310	ENSMUSG00000050783	Htr1f	Htr1eb	5-hydroxytryptamine (serotonin) receptor 1F	protein-coding	2.0	8.0	6.0	1.0	19.0	0.0
Merged-chr5-93268989-4	chr5	93268497	93269497	+	992.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007635, intron 2 of 7)	intron (NM_007635, intron 2 of 7)	1424.0	NM_007635	12452.0	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	35.0	54.0	27.0	36.5	69.0	32.5
Merged-chr12-44933176-4	chr12	44932650	44933650	+	992.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144552, intron 2 of 5)	intron (NM_144552, intron 2 of 5)	141333.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	2.5	13.0	6.0	1.5	3.5	3.0
Merged-chr14-66281029-4	chr14	66280533	66281533	+	992.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172498)	promoter-TSS (NM_172498)	19.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91789915-4	chr16	91789402	91790402	+	992.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 4 of 15)	ORR1D2|LTR|ERVL-MaLR	60531.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-23021793-4	chr2	23021275	23022275	+	992.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	RMER19B|LTR|ERVK	18466.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-53997084-4	chr5	53996580	53997580	+	992.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1443.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126857462-2	chr8	126856962	126857962	+	992.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	8442.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-63108803-3	chr13	63108311	63109311	+	992.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 5 of 15)	intron (NM_001289926, intron 5 of 15)	-131218.0	NR_110520	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.0	1.5	1.0	0.0	6.5	0.0
Merged-chr10-68724568-4	chr10	68724103	68725103	+	992.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	857.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99264537-4	chr12	99264041	99265041	+	992.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 4 of 5)	intron (NM_183186, intron 4 of 5)	-101733.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24335494-4	chr2	24334983	24335983	+	992.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1377.0	NM_031167	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121382611-2	chr5	121382111	121383111	+	992.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359947, intron 2 of 11)	intron (NM_001359947, intron 2 of 11)	2798.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	3.0	7.5	11.0	2.0	15.0	14.0
Merged-chr10-117899025-2	chr10	117898494	117899494	+	992.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26465.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	47.0	78.0	47.0	40.0	58.5	61.5
Merged-chr12-3872663-2	chr12	3872163	3873163	+	992.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 4 of 22)	intron (NM_007872, intron 4 of 22)	-10419.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34006898-2	chr13	34006398	34007398	+	992.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009068, intron 1 of 10)	intron (NM_009068, intron 1 of 10)	4024.0	NM_009068	19766.0	Mm.374799	NM_009068	ENSMUSG00000021408	Ripk1	D330015H01Rik|RIP|RIP-1|Rinp|Rip1	receptor (TNFRSF)-interacting serine-threonine kinase 1	protein-coding	5.5	8.0	13.5	5.5	8.0	13.5
Merged-chr13-48645201-4	chr13	48644708	48645708	+	992.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17828.0	NM_007526	12022.0	Mm.42241	NM_007526	ENSMUSG00000021381	Barx1	-	BarH-like homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-94536842-2	chr9	94536342	94537342	+	992.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033145, intron 1 of 2)	intron (NM_001033145, intron 1 of 2)	1239.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	5.0	7.5	5.0	1.5	3.5	5.5
Merged-chr2-68438095-4	chr2	68437615	68438615	+	992.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 1 of 17)	Lx8b|LINE|L1	33866.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21759594-2	chr9	21759094	21760094	+	992.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151673, intron 1 of 4)	B1_Mus2|SINE|Alu	709.0	NR_151672	67629.0	Mm.295642	NM_026282	ENSMUSG00000074476	Spc24	2410030K01Rik|AV109292|Spbc24	SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-48565338-2	chr13	48564838	48565838	+	992.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27066.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118927031-2	chr2	118926531	118927531	+	992.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_028117, exon 1 of 1)	exon (NM_028117, exon 1 of 1)	534.0	NM_028117	72136.0	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	24.5	6.5	22.0	7.5	7.5	4.5
Merged-chr8-33730830-4	chr8	33730310	33731310	+	992.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1104.0	NM_001167921	68153.0	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding	3.0	24.0	18.0	22.0	33.5	11.5
Merged-chr5-24814160-4	chr5	24813664	24814664	+	992.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053075, intron 2 of 7)	intron (NM_053075, intron 2 of 7)	28197.0	NM_053075	19744.0	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35729704-4	chr2	35729216	35730216	+	992.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001114125, exon 17 of 17)	3' UTR (NM_001114125, exon 17 of 17)	32984.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-55853561-4	chr7	55853043	55854043	+	992.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 1 of 30)	L1ME3G|LINE|L1	11472.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120068335-3	chr9	120067882	120068882	+	992.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009987)	promoter-TSS (NM_009987)	-86.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	11.0	0.5	7.5	8.5	17.5	6.5
Merged-chr15-75903504-4	chr15	75902994	75903994	+	992.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029663, exon 3 of 10)	exon (NM_029663, exon 3 of 10)	5850.0	NM_001285433	66656.0	Mm.258927	NM_023240	ENSMUSG00000055762	Eef1d	EF-1-delta	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86746253-4	chr11	86745731	86746731	+	992.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	11336.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65680268-4	chr18	65679737	65680737	+	992.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361052, intron 6 of 8)	intron (NM_001361052, intron 6 of 8)	-18031.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17896210-4	chr17	17895727	17896727	+	992.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8403.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	24.5	48.0	38.5	34.0	42.0	50.5
Merged-chr19-48049494-4	chr19	48048981	48049981	+	992.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111769.0	NM_001163267	381229.0	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	0.0	2.5	0.0	3.5	0.0	0.0
Merged-chr17-45642950-2	chr17	45642463	45643463	+	992.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013767, intron 4 of 21)	intron (NM_001013767, intron 4 of 21)	16346.0	NM_001013767	268958.0	Mm.426026	NM_001013767	ENSMUSG00000058626	Capn11	-	calpain 11	protein-coding	9.5	3.0	7.5	6.0	0.5	2.5
Merged-chr10-77965177-2	chr10	77964677	77965677	+	992.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 4 of 33)	intron (NM_138301, intron 4 of 33)	4695.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86943491-3	chr4	86942998	86943998	+	992.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31A_Mm|LTR|ERVK	69084.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	0.0	0.0	5.0	6.0	7.0	6.0
Merged-chr11-100399578-4	chr11	100399081	100400081	+	992.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132425, intron 1 of 3)	intron (NR_132425, intron 1 of 3)	1465.0	NR_132425	102635937.0	Mm.421398	NR_132425		Gm12348	-	predicted gene 12348	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147992746-4	chr5	147992256	147993256	+	992.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029920, intron 1 of 14)	ORR1D2|LTR|ERVL-MaLR	35436.0	NM_029920	77521.0	Mm.244177	NM_029920	ENSMUSG00000029651	Mtus2	5730592G18Rik|A730013O20Rik|AU067634|C130038G02Rik|Cazip|Gm763|mKIAA0774	microtubule associated tumor suppressor candidate 2	protein-coding	1.5	3.0	0.0	5.0	5.5	2.0
Merged-chr19-38015750-4	chr19	38015237	38016237	+	992.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 3 of 53)	intron (NM_001302140, intron 3 of 53)	27840.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	30.0	52.0	23.5	33.5	109.5	37.0
Merged-chr10-80988227-4	chr10	80987714	80988714	+	992.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	13151.0	NM_001038655	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-54523900-4	chr1	54523411	54524411	+	992.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163314, intron 12 of 26)	intron (NM_001163314, intron 12 of 26)	33773.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	2.0	2.0	3.0	2.0	3.0	3.0
Merged-chr5-99325995-4	chr5	99325501	99326501	+	992.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-73074.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	79.5	202.0	109.5	133.5	237.5	164.5
Merged-chr6-125353801-2	chr6	125353301	125354301	+	992.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011609, intron 1 of 9)	intron (NM_011609, intron 1 of 9)	4078.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	13.0	21.5	11.5	2.0	6.0	11.0
Merged-chr5-135476420-4	chr5	135475939	135476939	+	992.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	68683.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85278419-1	chr1	85277919	85278919	+	992.3333130000001	f1_balb.idr	Intergenic	L1_Mus3|LINE|L1	-7853.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77841408-4	chr15	77840904	77841904	+	992.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 1 of 40)	CpG	771.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10441516-4	chr16	10441037	10442037	+	992.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013778, intron 1 of 6)	L1MB2|LINE|L1	5825.0	NM_001359069	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3659080-4	chr8	3658570	3659570	+	992.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_022984)	TTS (NM_022984)	3300.0	NM_022984	57264.0	Mm.1181	NM_022984	ENSMUSG00000012705	Retn	ADSF|Fizz3|Rstn|Xcp4	resistin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117146220-4	chr2	117145719	117146719	+	992.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277256, intron 1 of 4)	intron (NM_001277256, intron 1 of 4)	25148.0	NM_033524	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71294819-4	chr17	71294415	71295415	+	992.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	L2c|LINE|L2	16096.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	12.0	18.5	15.5	4.0	22.5	4.0
Merged-chr1-70856098-4	chr1	70855602	70856602	+	992.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177164, intron 3 of 3)	intron (NM_177164, intron 3 of 3)	130387.0	NM_177164	320460.0	Mm.360649	NM_177164	ENSMUSG00000045648	Vwc2l	A830006F12Rik|Brl	von Willebrand factor C domain-containing protein 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-68590749-3	chr8	68590253	68591253	+	992.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172753, intron 2 of 9)	intron (NM_172753, intron 2 of 9)	144393.0	NM_001252623	234356.0	Mm.334569	NM_172753	ENSMUSG00000036356	Csgalnact1	4732435N03Rik|CSGalNAcT-1	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding	11.5	10.5	9.5	7.0	4.5	10.5
Merged-chr11-94653873-4	chr11	94653349	94654349	+	992.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177752)	promoter-TSS (NM_177752)	58.0	NM_053161	94064.0	Mm.34951	NM_053161	ENSMUSG00000024414	Mrpl27	A630055F16Rik|D11Moh47|D18Ertd643e	mitochondrial ribosomal protein L27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145244443-4	chr6	145243948	145244948	+	992.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021284, intron 2 of 4)	intron (NM_021284, intron 2 of 4)	5783.0	NM_021284	16653.0	Mm.383182	NM_021284	ENSMUSG00000030265	Kras	AI929937|K-Ras|K-Ras 2|K-ras|Ki-ras|Kras-2|Kras2|c-K-ras|c-Ki-ras|p21B|ras	Kirsten rat sarcoma viral oncogene homolog	protein-coding	7.5	5.0	26.0	4.5	37.5	18.5
Merged-chr4-35156313-4	chr4	35155824	35156824	+	992.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	1160.0	NM_178061	214944.0	Mm.32968	NM_178061	ENSMUSG00000073910	Mob3b	8430436F23Rik|A430018A01Rik|Mobkl2b	MOB kinase activator 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120559008-3	chr2	120558504	120559504	+	992.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011743, intron 1 of 21)	ORR1C2|LTR|ERVL-MaLR	4855.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	0.5	3.5	1.0	2.0	3.0	0.0
Merged-chr13-21200655-4	chr13	21200152	21201152	+	992.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	20721.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	0.0	2.5	5.0	10.0	0.0	2.0
Merged-chr2-132289353-4	chr2	132288873	132289873	+	992.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291039, intron 1 of 12)	RLTR17|LTR|ERVK	3434.0	NM_001291039	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74442153-6	chr17	74441662	74442662	+	992.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 4 of 8)	MTA_Mm|LTR|ERVL-MaLR	16946.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-63151933-5	chr11	63151440	63152440	+	992.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302255, intron 4 of 4)	intron (NM_001302255, intron 4 of 4)	19137.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-61141109-4	chr1	61140625	61141625	+	992.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	163211.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	0.0	1.0	1.5	0.0	2.5	0.0
Merged-chr2-28698821-4	chr2	28698330	28699330	+	992.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027283, intron 1 of 4)	MIR3|SINE|MIR	821.0	NM_027283	69987.0	Mm.239376	NM_027283	ENSMUSG00000026809	Spaca9	1700026L06Rik|MAST	sperm acrosome associated 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36796153-4	chr5	36795663	36796663	+	992.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026242, intron 1 of 1)	CpG	591.0	NM_026242	67568.0	Mm.332336	NM_026242	ENSMUSG00000055302	Mrfap1	9130413I22Rik|AL022827|Pam14	Morf4 family associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43965794-4	chr19	43965275	43966275	+	992.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030703, intron 6 of 8)	intron (NM_030703, intron 6 of 8)	20745.0	NM_030703	93721.0	Mm.206774	NM_030703	ENSMUSG00000025196	Cpn1	0610011F20Rik|CPN	carboxypeptidase N, polypeptide 1	protein-coding	30.0	64.5	74.0	57.0	83.0	96.5
Merged-chr11-36001505-2	chr11	36000984	36001984	+	992.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21395.0	NM_170779	211652.0	Mm.31267	NM_170779	ENSMUSG00000018849	Wwc1	AA408228|AU017197|BC037006|Kibra|mKIAA0869	WW, C2 and coiled-coil domain containing 1	protein-coding	1.0	0.0	1.0	0.5	0.0	0.0
Merged-chr13-99327586-4	chr13	99327043	99328043	+	992.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026873, intron 7 of 9)	intron (NM_026873, intron 7 of 9)	17135.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28390622-2	chr7	28390122	28391122	+	992.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_026042, intron 3 of 3)	L2b|LINE|L2	2068.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89289431-4	chr6	89288908	89289908	+	992.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-3683.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-52571016-4	chr18	52570515	52571515	+	992.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41148.0	NM_001286182	16948.0	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87044588-4	chr17	87044108	87045108	+	992.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19047.0	NM_019936	56724.0	Mm.109329	NM_019936	ENSMUSG00000024146	Cript	1200020A08Rik|AA589469	cysteine-rich PDZ-binding protein	protein-coding	3.0	7.0	9.5	0.0	11.5	3.0
Merged-chr17-65662833-4	chr17	65662348	65663348	+	992.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 6 of 6)	intron (NM_133685, intron 6 of 6)	-20644.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144137686-3	chr3	144137212	144138212	+	992.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64620.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73732228-4	chr15	73731724	73732724	+	992.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	7294.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-86573076-4	chr9	86572533	86573533	+	992.1785890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001145969, exon 2 of 3)	exon (NM_001145969, exon 2 of 3)	980.0	NM_027100	69519.0	Mm.272517	NM_027100	ENSMUSG00000032417	Rwdd2a	1700030C20Rik|AI848608|Rwdd2	RWD domain containing 2A	protein-coding	0.0	0.0	0.0	2.0	0.0	7.0
Merged-chr2-144698193-4	chr2	144697692	144698692	+	992.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025314, intron 4 of 5)	intron (NM_025314, intron 4 of 5)	98239.0	NM_025314	66044.0	Mm.28109	NM_025314	ENSMUSG00000027430	Dtd1	0610006H08Rik|DTD|DUE-B|Hars2	D-tyrosyl-tRNA deacylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166979251-4	chr2	166978731	166979731	+	992.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109905, intron 1 of 11)	RSINE1|SINE|B4	-14514.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91561764-4	chr16	91561273	91562273	+	992.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008338, exon 6 of 7)	exon (NM_008338, exon 6 of 7)	14679.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122637830-4	chr2	122637332	122638332	+	992.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004174)	promoter-TSS (NM_001004174)	-55.0	NM_001004174	433470.0	Mm.36783	NM_001004174	ENSMUSG00000033213	AA467197	Nmes1|mir-147	expressed sequence AA467197	protein-coding	7.0	0.0	3.5	6.5	6.5	3.5
Merged-chr7-38200377-4	chr7	38199939	38200939	+	992.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16652.0	NM_028166	72244.0	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	2.5	0.0	7.0	12.0	31.5	15.5
Merged-chr5-139282414-4	chr5	139281909	139282909	+	992.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	28912.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35026077-4	chr7	35025572	35026572	+	992.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 11 of 14)	intron (NM_008820, intron 11 of 14)	30494.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113130311-4	chr12	113129795	113130795	+	992.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346696, intron 11 of 19)	intron (NM_001346696, intron 11 of 19)	-9941.0	NM_024223	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132672699-3	chr7	132672212	132673212	+	992.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 6 of 6)	intron (NM_029609, intron 6 of 6)	62069.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171660603-4	chr1	171660106	171661106	+	992.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER77B|LTR|ERVL	-7569.0	NM_144539	75345.0	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	18.5	38.0	24.5	17.0	33.0	29.0
Merged-chr4-116676244-2	chr4	116675744	116676744	+	992.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9355.0	NM_011034	18477.0	Mm.30929	NM_011034	ENSMUSG00000028691	Prdx1	MSP23|NkefA|OSF-3|OSF3|PAG|Paga|PrdxI|PrxI|TDX2|TPxA|Tdpx2|prx1	peroxiredoxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120310967-4	chr11	120310502	120311502	+	992.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	36411.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-68748483-4	chr7	68748069	68749069	+	992.142822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042592, intron 1 of 7)	intron (NM_001042592, intron 1 of 7)	669.0	NM_001042592	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150371863-4	chr4	150371366	150372366	+	992.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 1 of 22)	CpG	89950.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	0.0	3.0	11.0	0.0	6.5	6.5
Merged-chr17-50369462-4	chr17	50368953	50369953	+	992.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75833.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-183266275-4	chr1	183265762	183266762	+	992.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-30798.0	NM_181732	108909.0	Mm.290502	NM_145626	ENSMUSG00000042901	Aida	2610208M17Rik|BC004835	axin interactor, dorsalization associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-51930131-4	chr16	51929725	51930725	+	992.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57062.0	NR_153657	629091.0	Mm.364775	NR_153657		Gm29686	-	predicted gene, 29686	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-74471967-4	chr5	74471465	74472465	+	992.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114660, intron 3 of 8)	intron (NM_001114660, intron 3 of 8)	59777.0	NM_178672	212986.0	Mm.134147	NM_178672	ENSMUSG00000062110	Scfd2	E430013M20Rik|STXBP1L1	Sec1 family domain containing 2	protein-coding	0.0	2.5	1.5	0.0	4.5	0.0
Merged-chr16-30066508-4	chr16	30065999	30066999	+	992.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008235, intron 3 of 3)	CpG	1142.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11123772-4	chr4	11123281	11124281	+	992.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151526)	promoter-TSS (NR_151526)	-177.0	NR_151526	100503518.0	Mm.102270	NR_151526	ENSMUSG00000086765	Gm11827	-	predicted gene 11827	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18249517-4	chr16	18249027	18250027	+	992.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011239)	promoter-TSS (NM_011239)	644.0	NM_001081000	15547.0	Mm.271798	NM_008307	ENSMUSG00000022721	Trmt2a	Htf9c	TRM2 tRNA methyltransferase 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80738364-4	chr18	80737855	80738855	+	992.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001201569, intron 28 of 29)	intron (NM_001201569, intron 28 of 29)	-25284.0	NM_001164110	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	1.5	2.5	4.0	4.5	4.5	1.5
Merged-chr11-101562635-4	chr11	101562130	101563130	+	992.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008676, intron 7 of 23)	B2_Mm2|SINE|B2	9976.0	NM_001252223	17966.0	Mm.784	NM_008676	ENSMUSG00000017119	Nbr1	mKIAA0049	neighbor of Brca1 gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55472480-9	chr13	55471918	55472918	+	992.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001030296, exon 2 of 3)	exon (NM_001030296, exon 2 of 3)	5358.0	NR_105909	102465569.0		NR_105909	ENSMUSG00000098341	Mir6944	Gm27710|mmu-mir-6944	microRNA 6944	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4260665-4	chr11	4260192	4261192	+	992.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008501, intron 1 of 3)	intron (NM_008501, intron 1 of 3)	3124.0	NM_008501	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30716268-4	chr14	30715792	30716792	+	992.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166532, intron 1 of 20)	CpG	677.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	39.0	98.5	79.5	44.5	63.5	80.5
Merged-chr11-105460087-4	chr11	105459590	105460590	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3355.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-43362053-4	chr11	43361546	43362546	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A2|LTR|ERVK	12415.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	7.0	4.0	2.5	2.5	5.5	4.5
Merged-chr1-91027126-4	chr1	91026631	91027631	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	ORR1D2|LTR|ERVL-MaLR	-26313.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122813974-4	chr7	122813472	122814472	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19-int|LTR|ERVK	142228.0	NM_019430	54376.0	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93446182-4	chr1	93445642	93446642	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301364)	promoter-TSS (NM_001301364)	-441.0	NM_001301364	110611.0	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	14.5	14.5	17.0	0.0	0.0	2.0
Merged-chr3-65953956-4	chr3	65953457	65954457	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019937, intron 3 of 10)	intron (NM_019937, intron 3 of 10)	4292.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	14.5	46.0	26.0	8.5	31.5	29.5
Merged-chr17-48325911-4	chr17	48325430	48326430	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177083, exon 6 of 6)	3' UTR (NM_177083, exon 6 of 6)	9768.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62590367-4	chr10	62589855	62590855	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019553, intron 7 of 14)	intron (NM_019553, intron 7 of 14)	-11898.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5949765-4	chr11	5949293	5950293	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010292, exon 1 of 10)	5' UTR (NM_010292, exon 1 of 10)	288.0	NM_010292	103988.0	Mm.220358	NM_010292	ENSMUSG00000041798	Gck	GLK|Gk|Gls006|HK4|HKIV|HXKP|Hlb62|MODY2	glucokinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170371502-4	chr1	170370965	170371965	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 4 of 9)	intron (NM_001109985, intron 4 of 9)	62604.0	NM_001039593	76925.0	Mm.33631	NM_001039593	ENSMUSG00000042800	Spata46	1700015E13Rik	spermatogenesis associated 46	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20653481-4	chr10	20652966	20653966	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 1 of 12)	B4A|SINE|B4	71612.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118910112-4	chr14	118909634	118910634	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360412, intron 8 of 22)	PB1D10|SINE|Alu	12657.0	NM_001360413	66573.0	Mm.87456	NM_025943	ENSMUSG00000042156	Dzip1	2510025K24Rik|2810422M04Rik	DAZ interacting protein 1	protein-coding	5.5	11.0	11.5	2.0	6.5	15.0
Merged-chr9-59657340-5	chr9	59656847	59657847	+	992.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253883, intron 1 of 10)	CpG	979.0	NM_011099	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-70877537-4	chr2	70877010	70878010	+	992.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52030.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80848738-3	chr10	80848237	80849237	+	992.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ZP3AR|Satellite|Satellite	-4698.0	NM_001013758	237403.0	Mm.40213	NM_001013758	ENSMUSG00000051067	Lingo3	AI851712|LERN2	leucine rich repeat and Ig domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-19768248-3	chr16	19767744	19768744	+	992.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159408, intron 4 of 4)	intron (NM_001159408, intron 4 of 4)	8010.0	NM_001159407	108105.0	Mm.33935	NM_054052	ENSMUSG00000022686	B3gnt5	beta3GnT5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-75094906-4	chr9	75094422	75095422	+	992.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010864, intron 1 of 40)	intron (NM_010864, intron 1 of 40)	23716.0	NM_010864	17918.0	Mm.3645	NM_010864	ENSMUSG00000034593	Myo5a	9630007J19Rik|AI413174|AI661011|Dbv|MVa|Myo5|MyoVA|Sev-1|d|d-120J|flail|flr	myosin VA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-117487054-4	chr7	117486558	117487558	+	992.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175645, intron 2 of 11)	MIR|SINE|MIR	106079.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-40844319-4	chr13	40843821	40844821	+	992.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-15447.0	NM_023887	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75154357-4	chr11	75153872	75154872	+	992.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 15 of 18)	intron (NM_001002764, intron 15 of 18)	13780.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95687927-4	chr3	95687402	95688402	+	992.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144899)	promoter-TSS (NM_144899)	15.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0.0	3.5	1.5	0.0	0.0	0.0
Merged-chr7-19841522-4	chr7	19841001	19842001	+	992.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10502.0	NM_001270489	100502736.0	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44496272-3	chr11	44495790	44496790	+	992.033325	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22674.0	NM_028862	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	19.0	30.0	24.5	4.5	3.5	5.5
Merged-chr10-117893340-4	chr10	117892846	117893846	+	992.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32113.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105694322-6	chr5	105693864	105694864	+	992.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-5605.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	22.5	75.5	34.0	30.0	62.0	37.5
Merged-chr4-126259173-2	chr4	126258673	126259673	+	992.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-2854.0	NM_001145970	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	43.5	37.0	30.0	43.0	41.5	30.0
Merged-chr8-122907964-1	chr8	122907464	122908464	+	992.0	f1_balb.idr	intron (NR_037865, intron 4 of 13)	intron (NR_037865, intron 4 of 13)	59590.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	18.0	4.0	10.0	6.0	4.0	11.0
Merged-chr7-19385861-2	chr7	19385361	19386361	+	992.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030759)	promoter-TSS (NR_030759)	-782.0	NR_030759	100124438.0		NR_030759	ENSMUSG00000076315	Mir343	Mirn343|mmu-mir-343	microRNA 343	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115987533-2	chr6	115987033	115988033	+	992.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026376, intron 1 of 35)	intron (NM_026376, intron 1 of 35)	7472.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151074994-2	chr1	151074494	151075494	+	992.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63040.0	NR_038011	402734.0	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89443889-2	chr3	89443389	89444389	+	992.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146131, intron 5 of 10)	B3|SINE|B2	7185.0	NM_146131	229534.0	Mm.65906	NM_146131	ENSMUSG00000042613	Pbxip1	4732463H20Rik	pre B cell leukemia transcription factor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103032053-2	chr11	103031553	103032553	+	992.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008707, intron 1 of 11)	intron (NM_008707, intron 1 of 11)	3510.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75198305-2	chr14	75197805	75198805	+	992.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 3 of 16)	URR1B|DNA|hAT-Charlie	-43982.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65737306-4	chr17	65736805	65737805	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	35447.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31637910-2	chr2	31637410	31638410	+	992.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2127.0	NM_001123362	381359.0	Mm.379512	NM_001123362	ENSMUSG00000079466	Prdm12	Gm998	PR domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40301276-4	chr4	40300771	40301771	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11961.0	NR_040663	75819.0	Mm.399244	NR_040663	ENSMUSG00000087137	4930509K18Rik	-	RIKEN cDNA 4930509K18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-66475485-2	chr18	66474985	66475985	+	992.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16881.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124586822-3	chr8	124586318	124587318	+	992.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023709, intron 1 of 19)	intron (NM_023709, intron 1 of 19)	10707.0	NM_023709	73647.0	Mm.6209	NM_023709	ENSMUSG00000031981	Capn9	2200003B16Rik|GC36|nCL-4|nCL4	calpain 9	protein-coding	0.0	6.5	5.0	1.5	24.5	11.0
Merged-chr2-174437080-4	chr2	174436594	174437594	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022325, intron 2 of 5)	intron (NM_022325, intron 2 of 5)	1945.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-110541518-4	chr13	110541029	110542029	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	146485.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	1.5	9.0	7.5	2.5	2.0	6.0
Merged-chr11-75165525-4	chr11	75165019	75166019	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001098203, exon 2 of 2)	exon (NM_001098203, exon 2 of 2)	2633.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149099769-4	chr4	149099237	149100237	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019781)	promoter-TSS (NM_019781)	75.0	NM_019781	56273.0	Mm.184172	NM_019781	ENSMUSG00000028975	Pex14	Pex14p|R75137	peroxisomal biogenesis factor 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135628192-4	chr3	135627685	135628685	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 6 of 24)	intron (NM_008689, intron 6 of 24)	63362.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	12.0	38.0	41.5	21.0	43.5	35.5
Merged-chr4-89354044-4	chr4	89353529	89354529	+	992.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132431, intron 2 of 9)	intron (NR_132431, intron 2 of 9)	-42997.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	1.5	7.5	2.0	3.5	11.0	9.0
Merged-chr17-35117708-1	chr17	35117208	35118208	+	992.0	f1_c57bl6.idr	exon (NM_001303476, exon 6 of 7)	exon (NM_001303476, exon 6 of 7)	-2308.0	NM_148939	266614.0	Mm.104680	NM_148939	ENSMUSG00000043807	Ly6g5b	-	lymphocyte antigen 6 complex, locus G5B	protein-coding	0.0	0.0	2.0	0.0	2.0	2.0
Merged-chr18-83936788-2	chr18	83936288	83937288	+	992.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	149774.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43672331-3	chr5	43671840	43672840	+	992.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359906, intron 4 of 37)	intron (NM_001359906, intron 4 of 37)	9961.0	NM_001359903	231214.0	Mm.44434	NM_172274	ENSMUSG00000039765	Cc2d2a	5730509K17Rik|b2b1035Clo	coiled-coil and C2 domain containing 2A	protein-coding	1.0	2.5	1.5	1.0	3.5	8.5
Merged-chr3-133332433-2	chr3	133331933	133332933	+	992.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293641, intron 5 of 11)	intron (NM_001293641, intron 5 of 11)	22323.0	NM_001293641	74776.0	Mm.210305	NM_146141	ENSMUSG00000028013	Ppa2	1110013G13Rik|Sid6306	pyrophosphatase (inorganic) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-15727773-4	chr6	15727260	15728260	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 2 of 4)	intron (NM_175088, intron 2 of 4)	7099.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49243591-4	chr13	49243089	49244089	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028340, intron 1 of 4)	intron (NM_028340, intron 1 of 4)	4705.0	NM_001360772	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103343997-4	chr14	103343499	103344499	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207215, intron 1 of 84)	intron (NM_207215, intron 1 of 84)	2801.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5567493-2	chr17	5566993	5567993	+	992.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	74893.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-87908985-4	chr10	87908474	87909474	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111274, intron 2 of 4)	intron (NM_001111274, intron 2 of 4)	47863.0	NM_001111276	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112630191-2	chr12	112629675	112630675	+	992.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 2 of 12)	B3|SINE|B2	10128.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	8.0	33.5	37.5	17.5	26.5	12.0
Merged-chr19-42144281-3	chr19	42143773	42144773	+	992.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3116.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87446133-4	chr17	87445612	87446612	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007589, intron 1 of 5)	CpG	823.0	NM_001355703	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-171829886-2	chr2	171829386	171830386	+	992.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	132913.0	NR_040509	75655.0	Mm.396203	NR_040509	ENSMUSG00000086823	1700028P15Rik	-	RIKEN cDNA 1700028P15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115677751-2	chr11	115677251	115678251	+	992.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	21783.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109440060-4	chr11	109439568	109440568	+	991.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040680)	promoter-TSS (NR_040680)	-10.0	NR_040680	100503496.0	Mm.265874	NR_040680		Gm45916	-	predicted gene, 45916	ncRNA	4.0	15.5	21.5	5.0	1.5	2.0
Merged-chr18-75503553-4	chr18	75503074	75504074	+	991.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 9 of 11)	intron (NM_201354, intron 9 of 11)	-11071.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	35.0	39.5	55.5	17.5	63.0	24.0
Merged-chr7-75576393-4	chr7	75575891	75576891	+	991.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 3 of 36)	intron (NM_029332, intron 3 of 36)	120857.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47864686-4	chr17	47864169	47865169	+	991.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29978.0	NM_001109973	17240.0	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	0.0	0.0	0.0	0.0	2.5	0.0
Merged-chr1-36072110-4	chr1	36071618	36072618	+	991.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	3718.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150569426-6	chr4	150568862	150569862	+	991.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	CpG	82812.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119228495-4	chr11	119227990	119228990	+	991.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172443)	promoter-TSS (NM_172443)	9.0	NM_001347625	207592.0	Mm.205263	NM_172443	ENSMUSG00000039976	Tbc1d16	B930087K01|BC026530|Tcd1d16	TBC1 domain family, member 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-22142632-6	chr10	22142074	22143074	+	991.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254744, intron 1 of 1)	intron (NM_001254744, intron 1 of 1)	6696.0	NM_001254744	319887.0	Mm.177746	NM_001254744	ENSMUSG00000097327	E030030I06Rik	-	RIKEN cDNA E030030I06 gene	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr4-150060160-3	chr4	150059641	150060641	+	991.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8313.0	NR_029751	723848.0		NR_029751	ENSMUSG00000065493	Mir34a	Mirn34a|mir-34a|mmu-mir-34a	microRNA 34a	ncRNA	4.0	5.0	9.5	20.5	31.5	31.5
Merged-chr11-87751200-4	chr11	87750700	87751700	+	991.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5664.0	NR_029555	387160.0		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	68.0	272.0	144.5	116.5	226.0	227.5
Merged-chr5-115260511-4	chr5	115260012	115261012	+	991.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302449, intron 1 of 16)	intron (NM_001302449, intron 1 of 16)	12383.0	NM_001302448	50849.0	Mm.30051	NM_016698	ENSMUSG00000041740	Rnf10	AA675014|RIE2|mKIAA0262	ring finger protein 10	protein-coding	0.5	10.0	5.5	1.5	8.0	6.0
Merged-chr6-33835423-4	chr6	33834916	33835916	+	991.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 12 of 17)	intron (NM_009148, intron 12 of 17)	-194032.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-69856586-4	chr2	69856079	69857079	+	991.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4983.0	NM_001110145	20823.0	Mm.10508	NM_009278	ENSMUSG00000068882	Ssb	SS-B	Sjogren syndrome antigen B	protein-coding	0.5	11.0	4.0	0.0	18.0	3.0
Merged-chr16-26689926-4	chr16	26689447	26690447	+	991.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152416, intron 4 of 12)	intron (NR_152416, intron 4 of 12)	65555.0	NR_105063	100504628.0	Mm.393275	NR_105063	ENSMUSG00000092545	Gm20319	-	predicted gene, 20319	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150927287-4	chr2	150926785	150927785	+	991.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027014, intron 5 of 6)	intron (NM_027014, intron 5 of 6)	17691.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8685401-4	chr3	8684964	8685964	+	991.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18426.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141766990-4	chr4	141766526	141767526	+	991.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172338, intron 11 of 14)	intron (NM_172338, intron 11 of 14)	20351.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	150.5	355.5	274.5	126.5	198.5	171.0
Merged-chr2-102917616-4	chr2	102917106	102918106	+	991.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15941.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	13.5	17.0	17.5	8.5	25.0	16.0
Merged-chr5-115187393-4	chr5	115186881	115187881	+	991.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310712, intron 1 of 5)	intron (NM_001310712, intron 1 of 5)	-1260.0	NM_001310715	29867.0	Mm.38551	NM_013879	ENSMUSG00000029544	Cabp1	caldendrin	calcium binding protein 1	protein-coding	0.0	0.0	2.5	0.0	0.5	1.0
Merged-chr4-139614683-4	chr4	139614166	139615166	+	991.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205173, intron 7 of 8)	intron (NM_001205173, intron 7 of 8)	-8228.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	15.5	18.5	25.5	8.0	21.0	8.5
Merged-chr17-31077675-4	chr17	31077162	31078162	+	991.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	19968.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	10.5	10.5	11.5	3.5	12.5	19.0
Merged-chr5-125352048-4	chr5	125351566	125352566	+	991.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10972.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	2.0	17.0	8.5	3.5	17.0	11.5
Merged-chr9-46120108-4	chr9	46119638	46120638	+	991.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	107318.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-67267569-3	chr6	67267060	67268060	+	991.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113565, intron 1 of 7)	CpG	581.0	NM_025814	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78803941-7	chr11	78803437	78804437	+	991.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22658.0	NM_001076681	66274.0	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55807154-4	chr1	55806636	55807636	+	991.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124105.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	25.0	85.5	59.5	17.5	42.0	41.5
Merged-chr3-36467816-4	chr3	36467300	36468300	+	991.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009673, intron 2 of 12)	intron (NM_009673, intron 2 of 12)	7724.0	NR_105976	102466786.0		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28015584-4	chr17	28015060	28016060	+	991.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 12 of 24)	intron (NM_181413, intron 12 of 24)	65024.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-118128200-4	chr6	118127707	118128707	+	991.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362149, intron 2 of 7)	intron (NM_001362149, intron 2 of 7)	10623.0	NM_001362149	78752.0	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-138392867-4	chr7	138392350	138393350	+	991.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183289, intron 3 of 11)	intron (NM_183289, intron 3 of 11)	4880.0	NM_183289	70571.0	Mm.334297	NM_183289	ENSMUSG00000091002	Tcerg1l	5730476P14Rik	transcription elongation regulator 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70361646-4	chr14	70361150	70362150	+	991.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-10226.0	NM_001135151	213053.0	Mm.270647	NM_144808	ENSMUSG00000022094	Slc39a14	FAD-123|ZIP-14|Zip14|fad123	solute carrier family 39 (zinc transporter), member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21368421-4	chr9	21367921	21368921	+	991.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277322)	promoter-TSS (NM_001277322)	-111.0	NM_001277322	16201.0	Mm.440026	NM_010561	ENSMUSG00000032178	Ilf3	MBII-26|MPHOSPH4|NF90|NFAR	interleukin enhancer binding factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51401363-4	chr13	51400860	51401860	+	991.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7258.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0.0	0.0	0.0	10.0	17.0	11.5
Merged-chr10-122039774-4	chr10	122039299	122040299	+	991.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081037, intron 1 of 21)	L1M5|LINE|L1	7516.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-124142041-4	chr9	124141522	124142522	+	991.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20479.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32876078-4	chr2	32875565	32876565	+	991.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146119)	promoter-TSS (NM_146119)	-69.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-20829529-4	chr1	20829042	20830042	+	991.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-9230.0	NM_008563	17215.0	Mm.4502	NM_008563	ENSMUSG00000041859	Mcm3	AL033361|C80350|Mcmd|P1|P1-MCM3|p1.m	minichromosome maintenance complex component 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52196317-6	chr3	52195736	52196736	+	991.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72101.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23987425-5	chr16	23986931	23987931	+	991.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009744, intron 1 of 9)	intron (NM_009744, intron 1 of 9)	1421.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79864380-4	chr12	79863883	79864883	+	991.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60350.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58688427-4	chr13	58687940	58688940	+	991.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73871.0	NR_045469	67585.0	Mm.84751	NR_045469	ENSMUSG00000114384	4930455J16Rik	-	RIKEN cDNA 4930455J16 gene	ncRNA	9.5	16.5	5.5	9.0	6.0	10.0
Merged-chr11-54811431-4	chr11	54810944	54811944	+	991.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8475.0	NR_040284	432562.0	Mm.406948	NR_040284	ENSMUSG00000086789	Lyrm7os	Gm12228	LYR motif containing 7, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-75315174-4	chr4	75314660	75315660	+	991.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26|LTR|ERVK	-36868.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62847454-4	chr4	62846940	62847940	+	991.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118134.0	NM_028326	72701.0	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47531387-3	chr19	47530874	47531874	+	991.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175360, intron 2 of 9)	intron (NM_175360, intron 2 of 9)	5745.0	NM_175360	108689.0	Mm.218048	NM_175360	ENSMUSG00000042694	Stn1	0610009H20Rik|2310057J23Rik|AAF-44|AAF44|AI413458|Obfc1|RPA-32	STN1, CST complex subunit	protein-coding	4.5	0.0	1.0	5.0	5.0	6.0
Merged-chr1-161492253-3	chr1	161491747	161492747	+	991.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2410.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	15.0	20.5	26.0	29.0	37.5	21.0
Merged-chr2-51147090-3	chr2	51146601	51147601	+	991.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028810, intron 2 of 4)	intron (NM_028810, intron 2 of 4)	2010.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125305407-3	chr5	125304902	125305902	+	991.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	35692.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-27098219-3	chr9	27097716	27098716	+	991.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023277, exon 9 of 9)	3' UTR (NM_023277, exon 9 of 9)	57205.0	NM_023277	83964.0	Mm.28770	NM_023277	ENSMUSG00000031990	Jam3	1110002N23Rik|JAM-3|JAM-C|Jcam3	junction adhesion molecule 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32328307-3	chr19	32327807	32328807	+	991.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 2 of 9)	intron (NM_144792, intron 2 of 9)	21009.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	1.5	0.0	0.0
Merged-chr7-80024380-6	chr7	80023884	80024884	+	991.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146000)	promoter-TSS (NM_001146000)	-430.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	18.5	29.5	19.5	6.0	20.0	21.5
Merged-chr8-61621470-3	chr8	61620986	61621986	+	991.761902	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	-30317.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	2.5	5.0	2.0	1.5	1.5	0.5
Merged-chr19-21913912-4	chr19	21913408	21914408	+	991.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	135568.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	13.0	19.0	25.0	15.5	11.5	21.0
Merged-chr12-32698911-4	chr12	32698332	32699332	+	991.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121503.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102411923-4	chr11	102411442	102412442	+	991.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20B|DNA|hAT-Charlie	-4425.0	NM_026542	68066.0	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101210291-2	chr15	101209791	101210791	+	991.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_007395, intron 8 of 8)	intron (NM_007395, intron 8 of 8)	-10956.0	NR_045996	105968.0	Mm.120798	NR_045996	ENSMUSG00000115944	AU021063	-	expressed sequence AU021063	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5420003-3	chr13	5419509	5420509	+	991.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	438083.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	2.0	0.0	0.0	0.0	2.5	5.5
Merged-chr7-49250252-4	chr7	49249806	49250806	+	991.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 1 of 37)	intron (NM_175272, intron 1 of 37)	4117.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6568005-4	chr15	6567505	6568505	+	991.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-11842.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166968686-2	chr2	166968186	166969186	+	991.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109905, intron 1 of 11)	intron (NM_001109905, intron 1 of 11)	-3969.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30725101-4	chr13	30724623	30725623	+	991.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24110.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	1.5	6.5	10.0	1.5	6.5	10.0
Merged-chr2-166275581-4	chr2	166275083	166276083	+	991.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033467, intron 1 of 2)	intron (NR_033467, intron 1 of 2)	1675.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-86889791-4	chr10	86889279	86890279	+	991.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 41 of 68)	Lx8|LINE|L1	110774.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-133623443-8	chr3	133622907	133623907	+	991.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79017.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152805068-4	chr2	152804573	152805573	+	991.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	23416.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50841583-4	chr11	50841096	50842096	+	991.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290779)	promoter-TSS (NM_001290779)	-44.0	NM_173387	214779.0	Mm.191846	NM_173387	ENSMUSG00000044296	Zfp879	Znf879	zinc finger protein 879	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-59613984-4	chr1	59613490	59614490	+	991.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013771, intron 13 of 19)	intron (NM_001013771, intron 13 of 19)	56844.0	NM_009460	22218.0	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-136253035-4	chr3	136252543	136253543	+	991.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 3 of 16)	intron (NM_001033350, intron 3 of 16)	73023.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	1.5	7.0	10.0	3.5	3.0	4.5
Merged-chr8-26104685-4	chr8	26104183	26105183	+	991.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207659, intron 2 of 21)	intron (NM_207659, intron 2 of 21)	14541.0	NM_207659	320191.0	Mm.334464	NM_207659	ENSMUSG00000037234	Hook3	5830454D03Rik|AI317159|E330005F07Rik	hook microtubule tethering protein 3	protein-coding	19.0	21.0	15.0	5.0	15.0	17.5
Merged-chr12-105684544-4	chr12	105684047	105685047	+	991.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178613)	promoter-TSS (NM_178613)	694.0	NM_029654	76559.0	Mm.114362	NM_029654	ENSMUSG00000041341	Atg2b	2410024A21Rik|AI047755|AI503411|AW558123|C030004M05Rik|C630028L02Rik|mKIAA4067	autophagy related 2B	protein-coding	24.5	38.5	46.0	7.0	46.5	40.0
Merged-chr10-75146811-4	chr10	75146369	75147369	+	991.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081412, intron 8 of 22)	intron (NM_001081412, intron 8 of 22)	-65204.0	NM_153406	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84860139-4	chr17	84859653	84860653	+	991.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR50|LTR|ERVL	-69367.0	NM_028233	72416.0	Mm.217027	NM_028233	ENSMUSG00000024120	Lrpprc	3110001K13Rik|C76645|Gp130|Lrp130|Lsfc	leucine-rich PPR-motif containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67821441-4	chr5	67820919	67821919	+	991.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	C-rich|Low_complexity|Low_complexity	26012.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31601003-2	chr15	31600503	31601503	+	991.6999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_007637, intron 1 of 10)	intron (NM_007637, intron 1 of 10)	536.0	NM_001348035	12465.0	Mm.282158	NM_007637	ENSMUSG00000022234	Cct5	CCT-epsilon|Ccte|TCP-1-epsilon|TCPE|mKIAA0098	chaperonin containing Tcp1, subunit 5 (epsilon)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-56334480-4	chr13	56333972	56334972	+	991.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-28428.0	NR_046061	100038494.0	Mm.370447	NR_046061	ENSMUSG00000074885	Gm10782	-	predicted gene 10782	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36296667-4	chr18	36296168	36297168	+	991.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3433.0	NM_001267796	109169.0	Mm.426423	NM_001267796	ENSMUSG00000110185	Igip	6330403M23Rik	IgA inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-76396116-4	chr13	76395610	76396610	+	991.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030174, intron 1 of 20)	intron (NM_030174, intron 1 of 20)	11149.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	4.0	21.5	14.0	17.5	31.0	22.0
Merged-chr11-100725640-4	chr11	100725107	100726107	+	991.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305003, intron 1 of 5)	MIR3|SINE|MIR	11757.0	NM_029307	75482.0	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98773022-4	chr11	98772538	98773538	+	991.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145434, intron 1 of 7)	intron (NM_145434, intron 1 of 7)	2339.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-4994394-4	chr17	4993891	4994891	+	991.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085355)	promoter-TSS (NM_001085355)	-683.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83011452-3	chr6	83010951	83011951	+	991.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 7 of 9)	intron (NM_033079, intron 7 of 9)	22020.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	3.5
Merged-chr5-123436334-4	chr5	123435802	123436802	+	991.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133917, intron 1 of 16)	intron (NM_133917, intron 1 of 16)	41504.0	NM_177582	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119329669-4	chr13	119329160	119330160	+	991.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR2b|LTR|Gypsy	79351.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59184281-4	chr2	59183785	59184785	+	991.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	23435.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3574809-2	chr19	3574309	3575309	+	991.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360430, intron 1 of 22)	intron (NM_001360430, intron 1 of 22)	940.0	NM_001360430	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	2.0	2.0	3.5	2.0	1.0	3.0
Merged-chr8-84831673-4	chr8	84831172	84832172	+	991.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183358)	promoter-TSS (NM_183358)	593.0	NR_033145	23863.0	Mm.304252	NM_201227	ENSMUSG00000053226	Dand5	Cerl-2|Cerl2|Cerr2|Dte|GREM3|coco	DAN domain family member 5, BMP antagonist	protein-coding	8.0	29.5	30.5	9.5	39.5	34.5
Merged-chr18-5155566-2	chr18	5155066	5156066	+	991.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10165.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64609124-4	chr17	64608648	64609648	+	991.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	7499.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30482517-2	chr5	30482017	30483017	+	991.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029285, intron 3 of 3)	intron (NM_029285, intron 3 of 3)	16440.0	NM_029285	75434.0	Mm.332291	NM_029285	ENSMUSG00000029182	1700001C02Rik	1700047H18Rik	RIKEN cDNA 1700001C02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12373743-4	chr15	12373244	12374244	+	991.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081064, exon 19 of 24)	exon (NM_001081064, exon 19 of 24)	52248.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79533395-4	chr10	79532904	79533904	+	991.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302389, intron 1 of 5)	CpG	383.0	NM_001302442	50784.0	Mm.28873	NM_015817	ENSMUSG00000052151	Plpp2	Lpp2|PAP2-G|PAP2-gamma|PAP2c|Ppap2c	phospholipid phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114597849-4	chr5	114597352	114598352	+	991.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004180, intron 2 of 2)	B4|SINE|B4	29601.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	0.0	9.5	2.0	4.0	14.5	4.0
Merged-chr5-113872401-4	chr5	113871921	113872921	+	991.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011779, intron 2 of 10)	intron (NM_011779, intron 2 of 10)	36285.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	2.0	6.5	4.0	4.0	6.5	12.0
Merged-chr13-109776287-4	chr13	109775761	109776761	+	991.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 7 of 16)	intron (NM_011056, intron 7 of 16)	-127548.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66179152-4	chr14	66178655	66179655	+	991.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 5 of 30)	intron (NM_001162366, intron 5 of 30)	34669.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116642121-4	chr3	116641592	116642592	+	991.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008246, intron 5 of 11)	intron (NM_008246, intron 5 of 11)	20585.0	NM_008246	15247.0	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	3.0	22.0	15.0	5.5	5.0	7.0
Merged-chr3-139110245-4	chr3	139109741	139110741	+	991.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35040.0	NM_001356388	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	4.0	2.5	1.5	0.0	1.5	1.0
Merged-chr13-45088006-4	chr13	45087517	45088517	+	991.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-85921.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58687950-4	chr15	58687466	58688466	+	991.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	135461.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75734360-4	chr2	75733856	75734856	+	991.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29693.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	64.5	188.0	136.5	56.0	150.5	157.0
Merged-chr1-180268809-4	chr1	180268315	180269315	+	991.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12515.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80215311-4	chr10	80214795	80215795	+	991.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-11303.0	NM_023431	68114.0	Mm.273418	NM_023431	ENSMUSG00000020156	Mum1	2610019J09|9430059D04Rik|UBE-1C2	melanoma associated antigen (mutated) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-89023605-3	chr11	89023103	89024103	+	991.611145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24200.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	208.5	321.5	270.0	131.5	341.5	255.0
Merged-chr17-84238385-3	chr17	84237887	84238887	+	991.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 31 of 37)	intron (NM_183021, intron 31 of 37)	-50440.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21901656-4	chr9	21901135	21902135	+	991.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16548.0	NM_031874	19340.0	Mm.260157	NM_031874	ENSMUSG00000019066	Rab3d	C130057E11Rik	RAB3D, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-20550224-4	chr8	20549732	20550732	+	991.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-64695.0	NM_001270553	100861668.0	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-51636372-4	chr6	51635872	51636872	+	991.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91079.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134076335-4	chr1	134075838	134076838	+	991.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007570, exon 2 of 2)	3' UTR (NM_007570, exon 2 of 2)	2817.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23519091-4	chr13	23518591	23519591	+	991.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Gln-CAA|tRNA|tRNA	-11953.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	0.0	9.5	4.0	3.0	0.0	4.5
Merged-chr6-30229146-4	chr6	30228648	30229648	+	991.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001169576, intron 3 of 4)	intron (NM_001169576, intron 3 of 4)	14655.0	NM_001169577	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	0.0	0.0	4.5	1.0	2.0	5.0
Merged-chr7-122922298-4	chr7	122921797	122922797	+	991.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	48162.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23702891-4	chr13	23702387	23703387	+	991.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010424, exon 6 of 6)	3' UTR (NM_010424, exon 6 of 6)	-4429.0	NM_178208	319155.0	Mm.261662	NM_178208	ENSMUSG00000060678	Hist1h4c	-	histone cluster 1, H4c	protein-coding	48.5	50.5	34.0	9.5	33.0	24.0
Merged-chr16-90349857-4	chr16	90349361	90350361	+	991.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	-36536.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45282686-4	chr9	45282194	45283194	+	991.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13545.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101540892-4	chr7	101540391	101541391	+	991.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14911.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	2.0	7.0	6.0	2.5	38.0	20.0
Merged-chr10-8760696-4	chr10	8760129	8761129	+	991.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	125441.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	53.5	75.5	30.0	21.5	66.0	28.5
Merged-chr13-113359075-4	chr13	113358591	113359591	+	991.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	143753.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-144980953-4	chr4	144980464	144981464	+	991.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 68 of 69)	intron (NM_001276465, intron 68 of 69)	87827.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73039466-4	chr2	73038942	73039942	+	991.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58996.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-86779742-4	chr10	86779277	86780277	+	991.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175331, intron 1 of 13)	intron (NM_175331, intron 1 of 13)	772.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0.0	0.5	2.5	0.0	0.5	2.5
Merged-chr15-27628033-4	chr15	27627542	27628542	+	991.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013792, intron 1 of 6)	intron (NM_001013792, intron 1 of 6)	2651.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108442538-4	chr6	108442047	108443047	+	991.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-47196.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.0	0.0	0.0	0.0	0.5	1.0
Merged-chr1-60070877-4	chr1	60070386	60071386	+	991.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27021.0	NM_021312	57750.0	Mm.281079	NM_021312	ENSMUSG00000026019	Wdr12	4933402C23Rik|Ytm1|Ytm1p	WD repeat domain 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113913735-6	chr13	113913232	113914232	+	991.511108	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	119224.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121973294-4	chr14	121972849	121973849	+	991.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 4 of 8)	intron (NM_026861, intron 4 of 8)	-8156.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	2.0	0.0	0.5	0.0	0.0	1.0
Merged-chr7-13010626-2	chr7	13010126	13011126	+	991.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024699)	promoter-TSS (NM_001024699)	-774.0	NM_001360833	232879.0	Mm.279272	NM_001024699	ENSMUSG00000049600	Zbtb45	BB161562|Gm157|Zfp499	zinc finger and BTB domain containing 45	protein-coding	1.0	2.5	4.5	6.0	22.5	1.5
Merged-chr7-19002184-2	chr7	19001684	19002684	+	991.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145579)	TTS (NM_145579)	-1881.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141213963-4	chr4	141213474	141214474	+	991.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081174)	promoter-TSS (NM_001081174)	18.0	NM_001081174	76166.0	Mm.271064	NM_001081174	ENSMUSG00000073733	Rsg1	6330545A04Rik|Gm723|b2b2804Clo|b2b2827Clo	REM2 and RAB-like small GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167007788-4	chr2	167007296	167008296	+	991.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7517.0	NM_153065	228889.0	Mm.295031	NM_153065	ENSMUSG00000017999	Ddx27	C86129	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50750512-2	chr15	50750012	50751012	+	991.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	138537.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0.0	0.0	0.0	0.0	3.0	0.0
Merged-chr8-10139790-4	chr8	10139284	10140284	+	991.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-14127.0	NM_001319151	244281.0	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45083229-2	chr2	45082729	45083729	+	991.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	27048.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127634291-2	chr10	127633715	127634715	+	991.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-8771.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	22.5	64.5	31.5	24.0	67.0	33.0
Merged-chr10-78184499-2	chr10	78183999	78184999	+	991.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029546, intron 1 of 20)	intron (NM_029546, intron 1 of 20)	650.0	NM_029546	110816.0	Mm.103522	NM_029546	ENSMUSG00000032834	Pwp2	6530411D08Rik|Pwp2h|wdp103	PWP2 periodic tryptophan protein homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80738926-2	chr10	80738426	80739426	+	991.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007460, intron 1 of 30)	B2_Mm2|SINE|B2	3349.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104601380-2	chr8	104600880	104601880	+	991.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001252628)	TTS (NM_001252628)	9912.0	NM_001024606	382051.0	Mm.290750	NM_001024606	ENSMUSG00000048371	Pdp2	4833426J09Rik|Gm1705|mKIAA1348	pyruvate dehyrogenase phosphatase catalytic subunit 2	protein-coding	0.0	0.0	1.0	0.0	0.0	0.5
Merged-chr9-89267968-6	chr9	89267601	89268601	+	991.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56717.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	33.0	93.0	53.0	37.5	103.0	57.0
Merged-chr11-121388431-2	chr11	121387931	121388931	+	991.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139147)	promoter-TSS (NM_139147)	-180.0	NM_139147	217371.0	Mm.281639	NM_139147	ENSMUSG00000025170	Rab40b	SEC4L|rar	Rab40B, member RAS oncogene family	protein-coding	0.0	3.0	0.5	0.0	0.0	3.5
Merged-chr17-65883749-2	chr17	65883267	65884267	+	991.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009067, intron 1 of 9)	intron (NM_009067, intron 1 of 9)	1156.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	18.5	29.0	17.0	4.0	16.0	19.0
Merged-chr18-3507330-2	chr18	3506828	3507828	+	991.5	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_026505)	promoter-TSS (NM_026505)	-629.0	NM_026505	68010.0	Mm.284863	NM_026505	ENSMUSG00000024232	Bambi	2610003H06Rik	BMP and activin membrane-bound inhibitor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17130663-2	chr16	17130163	17131163	+	991.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_022324, exon 3 of 3)	exon (NM_022324, exon 3 of 3)	1720.0	NM_022324	64136.0	Mm.30222	NM_022324	ENSMUSG00000022769	Sdf2l1	-	stromal cell-derived factor 2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90904711-4	chr2	90904156	90905156	+	991.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311116)	promoter-TSS (NM_001311116)	65.0	NM_026688	68349.0	Mm.30113	NM_026688	ENSMUSG00000005510	Ndufs3	0610010M09Rik|CI-30kD	NADH dehydrogenase (ubiquinone) Fe-S protein 3	protein-coding	8.5	15.5	12.5	8.5	18.5	13.0
Merged-chr8-110654232-2	chr8	110653732	110654732	+	991.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151675, intron 12 of 17)	intron (NR_151675, intron 12 of 17)	35665.0	NR_151675	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-69721315-2	chr2	69720815	69721815	+	991.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1773.0	NM_001081086	228005.0	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	3.0	2.0	0.0	0.0	0.0	1.0
Merged-chr7-19268633-2	chr7	19268133	19269133	+	991.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009499, intron 1 of 12)	intron (NM_009499, intron 1 of 12)	3221.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	9.0	32.0	14.5	12.5	37.0	17.0
Merged-chr2-84617962-4	chr2	84617484	84618484	+	991.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355064, intron 5 of 18)	intron (NM_001355064, intron 5 of 18)	31496.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0.0	1.5	2.5	1.0	1.5	0.0
Merged-chr5-144006248-2	chr5	144005748	144006748	+	991.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177682, intron 6 of 14)	ORR1C1|LTR|ERVL-MaLR	8605.0	NM_177682	231874.0	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154140810-2	chr4	154140310	154141310	+	991.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011642)	promoter-TSS (NM_011642)	-602.0	NM_011642	22062.0	Mm.78015	NM_011642	ENSMUSG00000029026	Trp73	TAp73|Tp73|deltaNp73|p73	transformation related protein 73	protein-coding	0.0	11.5	4.5	0.0	11.5	5.0
Merged-chr6-72900510-2	chr6	72900010	72901010	+	991.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019715)	promoter-TSS (NM_019715)	-531.0	NM_019715	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	3.5	19.5	23.5	7.0	10.0	7.0
Merged-chr10-12921826-2	chr10	12921326	12922326	+	991.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_038028, intron 1 of 2)	intron (NR_038028, intron 1 of 2)	1301.0	NR_038027	320273.0	Mm.417706	NR_038027	ENSMUSG00000097378	B230208H11Rik	-	RIKEN cDNA B230208H11 gene	ncRNA	1.5	4.0	2.5	1.5	5.0	3.5
Merged-chr6-97319430-2	chr6	97318872	97319872	+	991.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 12 of 23)	intron (NM_145148, intron 12 of 23)	-66592.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	7.0	3.5	3.0	7.0	1.5	3.5
Merged-chr13-4940046-4	chr13	4939546	4940546	+	991.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-330882.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	5.5	6.5	2.0	1.0	3.5	4.0
Merged-chr8-70767883-5	chr8	70767365	70768365	+	991.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008841)	TTS (NM_008841)	-1202.0	NM_023065	65972.0	Mm.30241	NM_023065		Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	307.5	807.0	576.0	325.5	709.5	505.5
Merged-chr19-45675981-4	chr19	45675474	45676474	+	991.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15781.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	6.0	15.5	4.0	4.5	12.0	4.5
Merged-chr2-18063876-4	chr2	18063419	18064419	+	991.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045539)	promoter-TSS (NR_045539)	-666.0	NM_001252560	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-14884834-4	chr9	14884355	14885355	+	991.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_176807)	TTS (NM_176807)	19096.0	NM_176807	64931.0	Mm.86738	NM_022888	ENSMUSG00000031933	Izumo1r	0910001L11Rik|C86255|Folbp3|Folr4|Juno	IZUMO1 receptor, JUNO	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93945571-4	chr10	93945074	93946074	+	991.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18289.0	NR_029764	723908.0		NR_029764	ENSMUSG00000065607	Mir331	Mirn331|mmu-mir-331	microRNA 331	ncRNA	173.0	273.0	233.0	12.5	8.0	11.5
Merged-chr13-5769858-4	chr13	5769345	5770345	+	991.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88247.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60523938-4	chr18	60523442	60524442	+	991.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2212.0	NM_026302	67665.0	Mm.272801	NM_026302	ENSMUSG00000024603	Dctn4	1110001K06Rik|4930547K17Rik|C130039E17Rik|p62	dynactin 4	protein-coding	64.0	130.5	108.5	95.0	226.5	122.5
Merged-chr4-120053273-4	chr4	120052854	120053854	+	991.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-107852.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3195757-4	chr11	3195244	3196244	+	991.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2281.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34471962-4	chr19	34471438	34472438	+	991.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3197.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45111734-4	chr2	45111260	45112260	+	991.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110571)	promoter-TSS (NR_110571)	-500.0	NR_110571	433424.0	Mm.441408	NR_110571	ENSMUSG00000052248	Zeb2os	Gm13476|Zeb2nat	zinc finger E-box binding homeobox 2, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-10794077-4	chr18	10793562	10794562	+	991.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144860, intron 13 of 20)	intron (NM_144860, intron 13 of 20)	-8510.0	NR_029781	723959.0		NR_029781	ENSMUSG00000106348	Mir1a-2	Mir1-2|Mirn1-2|mir-1a-2|mmu-mir-1-2|mmu-mir-1a-2	microRNA 1a-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29623533-6	chr2	29623074	29624074	+	991.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	3854.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95827687-4	chr11	95827188	95828188	+	991.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153104, intron 1 of 2)	intron (NM_153104, intron 1 of 2)	3188.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60282828-4	chr10	60282338	60283338	+	991.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011179, intron 1 of 14)	intron (NM_011179, intron 1 of 14)	-1623.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170345685-4	chr2	170345176	170346176	+	991.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10685.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98832834-2	chr15	98832334	98833334	+	991.375	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033276, exon 55 of 55)	3' UTR (NM_001033276, exon 55 of 55)	-1326.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113907163-4	chr5	113906650	113907650	+	991.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011779, intron 1 of 10)	MTC|LTR|ERVL-MaLR	1556.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-58116504-4	chr19	58116021	58117021	+	991.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181415, intron 28 of 28)	intron (NM_181415, intron 28 of 28)	65354.0	NR_049196	100885835.0		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	83.5	76.5	38.0	49.0	85.5	94.0
Merged-chr16-13372150-4	chr16	13371675	13372675	+	991.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153588, intron 1 of 14)	intron (NM_153588, intron 1 of 14)	13754.0	NM_153588	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34924580-6	chr17	34924075	34925075	+	991.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023557, intron 13 of 20)	intron (NM_023557, intron 13 of 20)	-6678.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61536700-7	chr18	61536188	61537188	+	991.347595	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177828)	promoter-TSS (NM_177828)	-152.0	NM_177828	328967.0	Mm.488098	NM_177828	ENSMUSG00000045094	Arhgef37	4933429F08Rik	Rho guanine nucleotide exchange factor (GEF) 37	protein-coding	14.5	14.0	28.0	8.0	30.0	21.5
Merged-chr11-106920157-2	chr11	106919657	106920657	+	991.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025481, intron 1 of 18)	CpG	558.0	NM_025481	66313.0	Mm.340955	NM_025481	ENSMUSG00000018363	Smurf2	2810411E22Rik|AI558114|AI649275	SMAD specific E3 ubiquitin protein ligase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-30218161-2	chr17	30217661	30218661	+	991.333374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027060, exon 11 of 11)	3' UTR (NM_027060, exon 11 of 11)	178019.0	NR_030688	623169.0	Mm.440508	NR_030688		Gm6402	EG623169	ribosomal protein S17 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64704707-4	chr9	64704214	64705214	+	991.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134399, intron 23 of 24)	intron (NM_001134399, intron 23 of 24)	33042.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54437478-4	chr11	54436989	54437989	+	991.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173753)	promoter-TSS (NM_173753)	-690.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-69400805-4	chr18	69400317	69401317	+	991.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	54657.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	43.5	80.5	80.5	42.5	70.0	31.0
Merged-chr12-73589295-4	chr12	73588784	73589784	+	991.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 1 of 13)	L1ME2|LINE|L1	4488.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79525228-4	chr3	79524739	79525739	+	991.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	42440.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106563757-4	chr8	106563266	106564266	+	991.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23377.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56257572-3	chr17	56257050	56258050	+	991.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010192, exon 1 of 1)	exon (NM_010192, exon 1 of 1)	757.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-51813276-6	chr17	51812796	51813796	+	991.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163632, intron 1 of 10)	CpG	-1112.0	NM_001357636	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-127975774-4	chr1	127975262	127976262	+	991.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 13 of 20)	intron (NM_001285945, intron 13 of 20)	106989.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	0.0	1.0	1.0	1.0	0.0	1.0
Merged-chr15-84557776-4	chr15	84557264	84558264	+	991.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177630)	promoter-TSS (NM_177630)	59.0	NM_177630	223732.0	Mm.6471	NM_177630	ENSMUSG00000055745	Rtl6	BC058638|Ldoc1l|Mar6|Mart6	retrotransposon Gag like 6	protein-coding	6.0	4.5	1.0	1.0	10.0	7.5
Merged-chr13-54504202-4	chr13	54503675	54504675	+	991.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176987, intron 1 of 9)	CpG	370.0	NM_176987	319719.0	Mm.376151	NM_176987	ENSMUSG00000043183	Simc1	4732471D19Rik	SUMO-interacting motifs containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66846606-4	chr14	66846114	66847114	+	991.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009955, intron 3 of 13)	intron (NM_009955, intron 3 of 13)	21986.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	129.0	311.0	162.5	40.0	125.0	70.5
Merged-chr17-87302384-5	chr17	87301850	87302850	+	991.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 3 of 19)	intron (NM_028639, intron 3 of 19)	19464.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-57800560-4	chr8	57800058	57801058	+	991.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175032, intron 10 of 11)	intron (NM_175032, intron 10 of 11)	-147503.0	NM_144731	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	20.5	31.5	28.5	18.0	16.0	22.0
Merged-chr8-18564815-4	chr8	18564315	18565315	+	991.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30316.0	NM_173189	244329.0	Mm.235296	NM_173189	ENSMUSG00000039842	Mcph1	5430437K10Rik|BRIT1|D030046N04Rik|MCT|Tg(HLA-A2.1)1Enge	microcephaly, primary autosomal recessive 1	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr2-157139052-4	chr2	157138555	157139555	+	991.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3833.0	NM_018851	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34481008-4	chr1	34480494	34481494	+	991.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17418.0	NM_009355	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85490581-4	chr12	85490090	85491090	+	991.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16700.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141663725-3	chr4	141663206	141664206	+	991.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	CpG	409.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	127.5	333.5	291.5	111.5	302.5	242.0
Merged-chr18-38415831-6	chr18	38415354	38416354	+	991.257935	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3053.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29429002-4	chr11	29428502	29429502	+	991.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176841, intron 5 of 31)	MIRb|SINE|MIR	54830.0	NM_176841	108686.0	Mm.338284	NM_176841	ENSMUSG00000032740	Ccdc88a	A430106J12Rik|AI848406|Ape|C130096N06Rik|C330012F17Rik|D130005J21Rik|Girdin|Giv|Grdn|Hkrp1	coiled coil domain containing 88A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92821203-4	chr16	92820650	92821650	+	991.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	MLT1C|LTR|ERVL-MaLR	4924.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3148537-4	chr11	3148042	3149042	+	991.25	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 14 of 32)	intron (NM_030207, intron 14 of 32)	24521.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-89117473-4	chr2	89116973	89117973	+	991.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4963.0	NM_146902	258904.0	Mm.330377	NM_146902	ENSMUSG00000075102	Olfr1221	MOR233-3	olfactory receptor 1221	protein-coding	1.0	2.0	5.0	0.0	5.5	5.5
Merged-chr16-59600416-4	chr16	59599906	59600906	+	991.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36539.0	NR_040564	75145.0	Mm.399348	NR_040564		4930547E14Rik	-	RIKEN cDNA 4930547E14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-15799114-4	chr1	15798614	15799614	+	991.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6532.0	NM_009352	21749.0	Mm.4306	NM_009352	ENSMUSG00000025925	Terf1	Pin2|Trbf1|Trf1	telomeric repeat binding factor 1	protein-coding	42.5	12.0	17.0	16.0	48.0	33.5
Merged-chr3-123256876-4	chr3	123256366	123257366	+	991.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-10630.0	NM_027135	69608.0	Mm.29293	NM_027135	ENSMUSG00000039234	Sec24d	2310020L09Rik|Gm1349	Sec24 related gene family, member D (S. cerevisiae)	protein-coding	4.0	11.5	9.5	0.5	1.0	7.5
Merged-chr17-40873694-4	chr17	40873174	40874174	+	991.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6884.0	NM_027834	71583.0	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding	1.0	8.0	2.0	1.5	2.5	8.5
Merged-chr2-103627368-4	chr2	103626848	103627848	+	991.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	B3|SINE|B2	61038.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	6.5	7.5	10.5	0.0	5.5	16.5
Merged-chr8-120697805-4	chr8	120697316	120698316	+	991.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29496.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-17605857-2	chr15	17605357	17606357	+	991.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	763770.0	NR_045711	70886.0	Mm.399021	NR_045711	ENSMUSG00000098150	4921515E04Rik	-	RIKEN cDNA 4921515E04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34975986-2	chr17	34975486	34976486	+	991.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_013558, intron 1 of 1)	B4|SINE|B4	3283.0	NM_013558	15482.0	Mm.14287	NM_013558	ENSMUSG00000007033	Hspa1l	Hsc70t|Msh5	heat shock protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80923390-2	chr10	80922890	80923890	+	991.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-5145.0	NM_010722	16907.0	Mm.7362	NM_010722	ENSMUSG00000062075	Lmnb2	-	lamin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-72449608-3	chr9	72449102	72450102	+	991.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008613, intron 7 of 9)	intron (NM_008613, intron 7 of 9)	11073.0	NM_008613	17427.0	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	16.0	19.0	14.0	0.0	6.5	1.5
Merged-chr5-125364094-4	chr5	125363600	125364600	+	991.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23006.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100952213-4	chr7	100951695	100952695	+	991.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	12171.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	24.0	61.0	34.0	27.5	61.5	48.5
Merged-chr6-140614114-4	chr6	140613608	140614608	+	991.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8555.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-147022210-4	chr2	147021719	147022719	+	991.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356402, intron 1 of 28)	intron (NM_001356402, intron 1 of 28)	9220.0	NM_001356402	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	27.5	50.0	30.5	14.5	31.5	29.0
Merged-chr2-5116455-4	chr2	5115965	5116965	+	991.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21311.0	NM_028804	74186.0	Mm.274715	NM_028804	ENSMUSG00000026676	Ccdc3	2310045O21Rik	coiled-coil domain containing 3	protein-coding	2.5	3.0	1.5	2.5	1.5	2.0
Merged-chr11-21015107-4	chr11	21014674	21015674	+	991.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76150.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80692966-4	chr10	80692431	80693431	+	991.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	8889.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-57472398-4	chr1	57471912	57472912	+	991.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-65738.0	NM_001302963	68736.0	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154220130-4	chr2	154219623	154220623	+	991.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012392, intron 15 of 15)	intron (NM_001012392, intron 15 of 15)	-3619.0	NM_144890	228802.0	Mm.167411	NM_144890	ENSMUSG00000038572	Bpifb5	Lplunc5	BPI fold containing family B, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29362503-4	chr17	29361984	29362984	+	991.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013710, intron 1 of 15)	intron (NM_013710, intron 1 of 15)	1570.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	12.5	32.5	14.5	13.0	33.0	22.5
Merged-chr5-23387103-4	chr5	23386601	23387601	+	991.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47252.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	4.0	3.0	4.5	5.5	6.5	10.5
Merged-chr9-96723861-4	chr9	96723364	96724364	+	991.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175537, intron 1 of 2)	intron (NM_175537, intron 1 of 2)	-4014.0	NM_001359959	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-78861026-4	chr12	78860546	78861546	+	991.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023721, intron 1 of 8)	intron (NM_023721, intron 1 of 8)	592.0	NM_023721	73834.0	Mm.311549	NM_023721	ENSMUSG00000021114	Atp6v1d	1110004P10Rik|Atp6m|VATD|Vma8	ATPase, H+ transporting, lysosomal V1 subunit D	protein-coding	233.5	523.0	360.5	192.5	599.5	404.5
Merged-chr11-87039478-4	chr11	87038966	87039966	+	991.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025638, intron 7 of 9)	B4A|SINE|B4	34671.0	NM_025638	66569.0	Mm.281887	NM_025638	ENSMUSG00000061666	Gdpd1	2610020H15Rik	glycerophosphodiester phosphodiesterase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-87417129-6	chr14	87416655	87417655	+	991.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253755, intron 1 of 11)	CpG	572.0	NM_001253755	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	19.5	47.0	34.5	8.5	51.0	29.5
Merged-chr11-117824147-2	chr11	117823647	117824647	+	991.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271729, intron 2 of 5)	intron (NM_001271729, intron 2 of 5)	-1772.0	NM_027827	71562.0	Mm.273958	NM_027827	ENSMUSG00000017718	Afmid	9030621K19Rik|Ammd|FKF|KFA|Kf|formylase	arylformamidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97469330-2	chr6	97468827	97469827	+	991.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-10041.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	10.5	39.5	27.5	13.0	38.0	24.0
Merged-chr2-118536702-2	chr2	118536270	118537270	+	991.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331221, intron 3 of 3)	intron (NM_001331221, intron 3 of 3)	7817.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	13.0	25.0	14.0	5.0	15.0	13.0
Merged-chr15-75085628-4	chr15	75085128	75086128	+	991.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	26309.0	NM_001357693	100041546.0	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	1.0	4.5	3.0	0.0	5.0	4.0
Merged-chr9-44326716-6	chr9	44326183	44327183	+	991.138916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007875)	promoter-TSS (NM_007875)	-162.0	NM_007875	13478.0	Mm.18353	NM_007875	ENSMUSG00000032123	Dpagt1	AU021132|Dpagt2|GPT|Gnpta	dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152774774-4	chr1	152774272	152775272	+	991.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026369, exon 4 of 4)	3' UTR (NM_026369, exon 4 of 4)	8230.0	NM_026369	67771.0	Mm.288974	NM_026369	ENSMUSG00000008475	Arpc5	5830443F10Rik|p16-Arc	actin related protein 2/3 complex, subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5429576-4	chr17	5429066	5430066	+	991.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027457, intron 3 of 3)	intron (NM_027457, intron 3 of 3)	10694.0	NM_027457	70544.0	Mm.46654	NM_027457	ENSMUSG00000004945	Tmem242	1110008A10Rik|2310046K16Rik|5730437N04Rik	transmembrane protein 242	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-36156163-2	chr12	36155574	36156574	+	991.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_025840, intron 1 of 11)	intron (NM_025840, intron 1 of 11)	751.0	NM_025840	66912.0	Mm.288669	NM_025840	ENSMUSG00000020547	Bzw2	1110001I24Rik|Bdm2|HSPC028	basic leucine zipper and W2 domains 2	protein-coding	6.0	21.5	11.0	12.5	15.0	22.5
Merged-chr6-72522545-4	chr6	72522056	72523056	+	991.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-21835.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62363838-3	chr9	62363350	62364350	+	991.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 1 of 6)	CpG	22507.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-67563362-4	chr11	67562851	67563851	+	991.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008088, intron 1 of 13)	intron (NM_008088, intron 1 of 13)	-23149.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	4.0	1.0	2.0	5.5	1.5	1.0
Merged-chr7-7296762-2	chr7	7296262	7297262	+	991.083374	f1_balb.idr|f1_c57bl6.idr	exon (NM_011334, exon 3 of 13)	exon (NM_011334, exon 3 of 13)	2074.0	NM_001302386	12727.0	Mm.297883	NM_011334	ENSMUSG00000000605	Clcn4	Clc4-2|Clcn4-2|clC-4	chloride channel, voltage-sensitive 4	protein-coding	2.0	12.5	0.0	0.0	5.5	0.0
Merged-chr3-121580114-4	chr3	121579597	121580597	+	991.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47753.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71382124-4	chr2	71381621	71382621	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-7139.0	NM_026115	107435.0	Mm.272472	NM_026115	ENSMUSG00000027018	Hat1	2410071B14Rik|AA536933|Hat-1|KAT1	histone aminotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-28159111-4	chr15	28158591	28159591	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44675.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111944599-4	chr12	111944107	111945107	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029464)	promoter-TSS (NR_029464)	-125.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-88823989-4	chr18	88823495	88824495	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70212.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67461012-4	chr18	67460515	67461515	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3834.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-43921930-4	chr14	43921423	43922423	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_053112)	TTS (NM_053112)	1445.0	NM_053112	93725.0	Mm.429087	NM_053112	ENSMUSG00000090166	Ear10	Raf2	eosinophil-associated, ribonuclease A family, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55026097-4	chr1	55025561	55026561	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031179, intron 1 of 24)	intron (NM_031179, intron 1 of 24)	1417.0	NM_031179	81898.0	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	72.5	195.5	94.0	110.5	252.5	141.5
Merged-chr1-89580154-4	chr1	89579652	89580652	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	GC_rich|Low_complexity|Low_complexity	103740.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-16898591-4	chr6	16898039	16899039	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031198)	promoter-TSS (NM_031198)	-98.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111166126-4	chr12	111165607	111166607	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286122)	promoter-TSS (NM_001286122)	-263.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34501030-4	chr5	34500525	34501525	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139064, intron 2 of 5)	intron (NM_139064, intron 2 of 5)	12954.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-24438411-3	chr8	24437903	24438903	+	991.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026931, exon 1 of 1)	3' UTR (NM_026931, exon 1 of 1)	543.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23987086-4	chr18	23986568	23987568	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2566.0	NM_011755	22694.0	Mm.290596	NM_011755	ENSMUSG00000063281	Zfp35	Zfp-35|Znf271|mszf13|mszf20-1|mszf28|mszf68	zinc finger protein 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73659937-4	chr12	73659426	73660426	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	75130.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-52726922-4	chr1	52726436	52727436	+	991.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357464, intron 1 of 7)	CpG	382.0	NM_178081	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-38182705-4	chr7	38182188	38183188	+	991.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085385)	promoter-TSS (NM_001085385)	-529.0	NM_001085385	72244.0	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	23.5	4.5	16.0	9.5	17.5	4.5
Merged-chr16-50526133-4	chr16	50525615	50526615	+	991.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040380)	promoter-TSS (NR_040380)	-130.0	NR_040380	619312.0	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131106169-3	chr2	131105678	131106678	+	991.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19413.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	5.5	6.0	20.0	22.0	7.5	20.5
Merged-chr11-3382801-4	chr11	3382287	3383287	+	991.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010718, intron 2 of 15)	intron (NM_010718, intron 2 of 15)	-11383.0	NM_173053	16886.0	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	0.5	1.5	0.0	0.0	1.5	0.0
Merged-chr2-155563112-4	chr2	155562606	155563606	+	991.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008180)	TTS (NM_008180)	-6176.0	NR_040613	74945.0	Mm.401956	NR_040613	ENSMUSG00000086529	Acss2os	4930471I20Rik	acyl-CoA synthetase short-chain family member 2, opposite strand	ncRNA	1.0	14.0	16.0	3.5	31.0	19.0
Merged-chr16-21319063-4	chr16	21318573	21319573	+	991.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14283.0	NR_131983	76222.0	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6974662-8	chr19	6974116	6975116	+	991.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008889)	promoter-TSS (NM_008889)	-432.0	NM_008889	18938.0	Mm.140	NM_008889	ENSMUSG00000056612	Ppp1r14b	AOM172|PHI-1|PLCB3N|Png	protein phosphatase 1, regulatory (inhibitor) subunit 14B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94625912-4	chr16	94625401	94626401	+	991.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	intron (NM_001113389, intron 2 of 11)	14482.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-104604950-2	chr7	104604450	104605450	+	991.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7771.0	NM_146820	258817.0	Mm.377706	NM_146820	ENSMUSG00000051182	Olfr655	MOR38-1	olfactory receptor 655	protein-coding	0.0	2.5	0.0	0.0	0.0	0.0
Merged-chr14-60284585-2	chr14	60284085	60285085	+	991.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144843, intron 4 of 13)	L1_Mur3|LINE|L1	19380.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	39.0	106.5	48.0	23.5	102.0	19.0
Merged-chr3-8637412-2	chr3	8636912	8637912	+	991.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	9361.0	NR_153352	102635065.0		NR_153352	ENSMUSG00000104102	Gm32496	-	predicted gene, 32496	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-94602029-2	chr6	94601529	94602529	+	991.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026255, intron 9 of 9)	intron (NM_026255, intron 9 of 9)	4386.0	NR_106008	102466992.0		NR_106008	ENSMUSG00000098531	Mir7041	Gm27872|mmu-mir-7041	microRNA 7041	ncRNA	2.5	0.0	2.5	0.0	2.0	0.0
Merged-chr6-81986720-3	chr6	81986228	81987228	+	991.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-20779.0	NM_026490	56284.0	Mm.276293	NM_026490	ENSMUSG00000030045	Mrpl19	9030416F12Rik|9130412E02Rik|D6Ertd157e|MRP-L15|RLX1|Rpml15	mitochondrial ribosomal protein L19	protein-coding	0.0	10.5	2.5	8.5	2.0	3.0
Merged-chr7-31032543-1	chr7	31032043	31033043	+	991.0	f1_c57bl6.idr	TTS (NM_001111073)	TTS (NM_001111073)	7774.0	NR_106017	102465635.0		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	12.0	63.0	50.0	24.5	66.5	47.5
Merged-chr1-84286924-3	chr1	84286420	84287420	+	991.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2275.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60937824-2	chr11	60937324	60938324	+	991.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008928, intron 1 of 11)	intron (NM_008928, intron 1 of 11)	5767.0	NM_008928	26397.0	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46928882-4	chr8	46928391	46929391	+	991.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57996.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114563771-2	chr7	114563271	114564271	+	991.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177382)	promoter-TSS (NM_177382)	-799.0	NM_177382	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	6.0	38.5	24.5	6.5	7.5	15.0
Merged-chr14-122650217-2	chr14	122649717	122650717	+	991.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 8 of 24)	intron (NR_153443, intron 8 of 24)	115889.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70554568-2	chr14	70554068	70555068	+	991.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021877, exon 2 of 20)	5' UTR (NM_021877, exon 2 of 20)	512.0	NM_021877	15460.0	Mm.7598	NM_021877	ENSMUSG00000022096	Hr	ALUNC|AU|N|ba|bldy|hr|rh|rh-bmh|rhino	hairless	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44390191-4	chr11	44389701	44390701	+	991.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9862.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	5.0	0.0	0.5	0.0	5.0	7.0
Merged-chr6-97446770-2	chr6	97446270	97447270	+	991.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	12516.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32555759-4	chr4	32555262	32556262	+	991.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109661, intron 2 of 4)	L1MA9|LINE|L1	15900.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	24.5	47.0	35.0	24.0	76.0	35.0
Merged-chr6-37352123-2	chr6	37351623	37352623	+	991.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 8 of 11)	intron (NM_178661, intron 8 of 11)	-52147.0	NM_001347104	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49169977-3	chr13	49169482	49170482	+	991.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17565.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86952014-1	chr15	86951514	86952514	+	991.0	f1_c57bl6.idr	Intergenic	B4|SINE|B4	-592285.0	NM_001252310	106014.0	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	1.0	0.0	0.5	2.0	0.0	0.5
Merged-chr7-139248746-1	chr7	139248246	139249246	+	991.0	f0_balb.idr	intron (NM_001098636, intron 1 of 2)	CpG	264.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	18.0	73.5	67.0	14.5	60.0	63.5
Merged-chr11-117112425-2	chr11	117111925	117112925	+	991.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2747.0	NR_029459	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-177794649-2	chr1	177794149	177795149	+	991.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007422, intron 1 of 12)	intron (NM_007422, intron 1 of 12)	1860.0	NM_007422	11566.0	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45015585-2	chr7	45015085	45016085	+	991.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008422, intron 1 of 10)	intron (NM_001008422, intron 1 of 10)	664.0	NM_001008422	233208.0	Mm.28298	NM_001008422	ENSMUSG00000038406	Scaf1	AI480556|SR-A1	SR-related CTD-associated factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96580889-2	chr3	96580389	96581389	+	991.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001293701, exon 3 of 7)	exon (NM_001293701, exon 3 of 7)	13292.0	NM_027241	69870.0	Mm.292739	NM_027241	ENSMUSG00000028104	Polr3gl	2010003I19Rik	polymerase (RNA) III (DNA directed) polypeptide G like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24735867-2	chr17	24735367	24736367	+	991.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346668)	promoter-TSS (NM_001346668)	-726.0	NM_013759	27361.0	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-25846764-4	chr16	25846278	25847278	+	991.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127262, intron 2 of 10)	intron (NM_001127262, intron 2 of 10)	44862.0	NM_001127264	22061.0	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59424831-2	chr2	59424331	59425331	+	991.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38149.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-100492023-2	chr10	100491523	100492523	+	991.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146009, intron 4 of 52)	intron (NM_146009, intron 4 of 52)	3734.0	NM_146009	216274.0	Mm.229114	NM_146009	ENSMUSG00000019971	Cep290	BC004690|Nphp6|b2b1454Clo|b2b1752Clo	centrosomal protein 290	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136134179-2	chr1	136133679	136134679	+	991.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	2789.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110997427-4	chr9	110996902	110997902	+	991.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152179, intron 2 of 6)	intron (NR_152179, intron 2 of 6)	-7689.0	NM_153100	235636.0	Mm.441138	NM_153100	ENSMUSG00000066319	Rtp3	Tmem7	receptor transporter protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-143035553-3	chr2	143035064	143036064	+	991.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27505.0	NM_021335	20639.0	Mm.1323	NM_021335	ENSMUSG00000008333	Snrpb2	2810052G09Rik	U2 small nuclear ribonucleoprotein B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96099573-2	chr3	96099073	96100073	+	991.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4954.0	NM_001025613	229603.0	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23584481-4	chr13	23583963	23584963	+	990.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178194, exon 2 of 2)	3' UTR (NM_178194, exon 2 of 2)	1507.0	NM_001290530	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64771389-4	chr9	64770863	64771863	+	990.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33607.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166980335-4	chr2	166979862	166980862	+	990.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109905, intron 1 of 11)	URR1B|DNA|hAT-Charlie	-15645.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103604397-4	chr2	103603880	103604880	+	990.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	38070.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-80314988-4	chr8	80314493	80315493	+	990.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-179052.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-144007540-4	chr1	144007058	144008058	+	990.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3409.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72735375-4	chr6	72734856	72735856	+	990.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079822, intron 3 of 12)	intron (NM_001079822, intron 3 of 12)	53689.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64185389-3	chr15	64184893	64185893	+	990.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 5 of 28)	Lx9|LINE|L1	-124945.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	25.0	69.5	50.0	18.0	26.5	22.0
Merged-chr7-107259378-3	chr7	107258889	107259889	+	990.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49944.0	NM_029660	76572.0	Mm.128134	NM_029660	ENSMUSG00000073894	Rbmxl2	1700012H05Rik|Hnrnpg-t	RNA binding motif protein, X-linked-like 2	protein-coding	0.0	0.0	0.0	2.0	1.0	1.5
Merged-chr11-54028207-4	chr11	54027684	54028684	+	990.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330304)	promoter-TSS (NM_001330304)	-80.0	NM_001330304	30805.0	Mm.274590	NM_019687	ENSMUSG00000020334	Slc22a4	Octn1	solute carrier family 22 (organic cation transporter), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55318695-5	chr13	55318210	55319210	+	990.919983	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008739)	TTS (NM_008739)	3270.0	NM_009000	19336.0	Mm.220923	NM_009000	ENSMUSG00000034789	Rab24	6530406O07Rik	RAB24, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-124071704-4	chr9	124071208	124072208	+	990.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30475.0	NM_009915	12772.0	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180246382-4	chr1	180245877	180246877	+	990.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011183)	promoter-TSS (NM_011183)	-427.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5208009-4	chr6	5207518	5208518	+	990.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14072.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69682950-4	chr11	69682450	69683450	+	990.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163571)	promoter-TSS (NM_001163571)	-866.0	NM_001163571	80886.0	Mm.284592	NM_030702	ENSMUSG00000005204	Senp3	AA408656|Smt3ip|Smt3ip1	SUMO/sentrin specific peptidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-48924967-4	chr2	48924476	48925476	+	990.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149356, intron 8 of 13)	intron (NR_149356, intron 8 of 13)	24291.0	NM_001177313	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69035993-4	chr11	69035498	69036498	+	990.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281465, intron 22 of 22)	intron (NM_001281465, intron 22 of 22)	-9639.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-8427834-4	chr6	8427267	8428267	+	990.892822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001302353, exon 5 of 5)	3' UTR (NM_001302353, exon 5 of 5)	81394.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53311203-6	chr19	53310724	53311724	+	990.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360348)	promoter-TSS (NM_001360348)	-221.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10990109-4	chr16	10989588	10990588	+	990.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	B3A|SINE|B2	3033.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-20018226-4	chr3	20017734	20018734	+	990.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 8 of 16)	MTD|LTR|ERVL-MaLR	17076.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-112990927-4	chr10	112990420	112991420	+	990.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61894.0	NM_001033474	382423.0	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132	ataxin 7-like 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81389564-4	chr10	81389082	81390082	+	990.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3235.0	NR_105878	102466763.0		NR_105878	ENSMUSG00000098811	Mir6913	Gm27788|mmu-mir-6913	microRNA 6913	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36714302-2	chr18	36713777	36714777	+	990.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	12538.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	5.0	5.0	5.0	0.5	6.0	2.5
Merged-chr11-55470628-8	chr11	55470089	55471089	+	990.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013716, intron 1 of 11)	intron (NM_013716, intron 1 of 11)	837.0	NM_013716	27041.0	Mm.39631	NM_013716	ENSMUSG00000018583	G3bp1	AI849976|B430204O07|C87777|G3bp|mKIAA4115	GTPase activating protein (SH3 domain) binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124116197-4	chr5	124115721	124116721	+	990.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025671)	TTS (NM_025671)	113.0	NM_144509	65105.0	Mm.29430	NM_144509	ENSMUSG00000029404	Arl6ip4	AA408210|AA408365|Aip-4|Srp25	ADP-ribosylation factor-like 6 interacting protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-8057010-2	chr5	8056510	8057510	+	990.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080974, intron 1 of 7)	intron (NM_001080974, intron 1 of 7)	468.0	NM_001080974	109552.0	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-10408342-4	chr10	10407846	10408846	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 13 of 36)	intron (NM_001127353, intron 13 of 36)	63968.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-59133801-3	chr12	59133305	59134305	+	990.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165253, intron 1 of 22)	intron (NM_001165253, intron 1 of 22)	2352.0	NM_001165253	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	4.0	0.0	0.0	4.0	0.0	0.0
Merged-chr8-35433952-4	chr8	35433385	35434385	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58144.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	2.5	0.0	2.0	1.0	5.5	0.5
Merged-chr13-100408465-4	chr13	100407966	100408966	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008670, exon 16 of 16)	3' UTR (NM_008670, exon 16 of 16)	44398.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	4.0	7.0	0.0	11.0	4.0	2.0
Merged-chr12-80435191-4	chr12	80434706	80435706	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177267, intron 1 of 8)	CpG	1395.0	NM_177267	320808.0	Mm.220310	NM_177267	ENSMUSG00000049106	Dcaf5	9430020B07Rik|AI325023|AI430035|AI848110|AW124614|BCRG2|BCRP2|Wdr22	DDB1 and CUL4 associated factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88128665-4	chr7	88128163	88129163	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001143834, intron 10 of 10)	intron (NM_001143834, intron 10 of 10)	-149422.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36934356-4	chr16	36933887	36934887	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008225)	promoter-TSS (NM_008225)	-596.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-127258872-4	chr6	127258365	127259365	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49102.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27579450-4	chr3	27578942	27579942	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 4 of 26)	intron (NM_001356953, intron 4 of 26)	5553.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95533521-4	chr10	95533031	95534031	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080560, intron 1 of 3)	RLTR17|LTR|ERVK	18369.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73304873-4	chr12	73304384	73305384	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037717, intron 3 of 15)	intron (NM_001037717, intron 3 of 15)	18036.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	0.0	7.5	4.0	3.5	9.5	3.0
Merged-chr7-29044416-3	chr7	29043910	29044910	+	990.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009109, intron 83 of 105)	intron (NM_009109, intron 83 of 105)	39284.0	NR_035489	100316710.0		NR_035489	ENSMUSG00000089219	Mir1963	mir-1963|mmu-mir-1963	microRNA 1963	ncRNA	33.0	69.0	69.0	32.5	127.5	88.0
Merged-chr8-70213202-4	chr8	70212675	70213675	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001007570)	promoter-TSS (NM_001007570)	-894.0	NM_001007570	73095.0	Mm.185413	NM_001007570	ENSMUSG00000002346	Slc25a42	2900084M01Rik	solute carrier family 25, member 42	protein-coding	78.5	205.0	143.0	71.0	213.5	144.0
Merged-chr15-98728146-3	chr15	98727600	98728600	+	990.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357893)	promoter-TSS (NM_001357893)	98.0	NM_024169	66120.0	Mm.30729	NM_024169	ENSMUSG00000003355	Fkbp11	1110002O23Rik|FKBP-11	FK506 binding protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85885204-4	chr12	85884680	85885680	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 12 of 32)	MTD|LTR|ERVL-MaLR	60230.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45033736-4	chr17	45033226	45034226	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178652, intron 7 of 11)	intron (NM_178652, intron 7 of 11)	-152841.0	NM_029257	75341.0	Mm.386821	NM_029257		4930564C03Rik	-	RIKEN cDNA 4930564C03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-29947037-4	chr5	29946506	29947506	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66108.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111930537-4	chr12	111930066	111931066	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13916.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-42350895-6	chr6	42350384	42351384	+	990.8148189999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289618, intron 2 of 9)	intron (NM_001289618, intron 2 of 9)	1056.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101367650-4	chr15	101367130	101368130	+	990.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028770, intron 1 of 8)	intron (NM_028770, intron 1 of 8)	-1722.0	NR_035462	100316694.0		NR_035462	ENSMUSG00000088459	Mir1941	mmu-mir-1941	microRNA 1941	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80027124-4	chr7	80026697	80027697	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	CpG	969.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75901600-4	chr18	75901102	75902102	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145356, intron 2 of 4)	intron (NM_145356, intron 2 of 4)	81424.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	58.0	112.5	81.0	6.5	11.5	9.5
Merged-chr7-110372700-4	chr7	110372219	110373219	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 19 of 40)	intron (NM_177324, intron 19 of 40)	151016.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77520783-4	chr11	77520306	77521306	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026185)	TTS (NM_026185)	5689.0	NM_026185	67477.0	Mm.432526	NM_026185	ENSMUSG00000000686	Abhd15	1300007F04Rik	abhydrolase domain containing 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80628844-4	chr7	80628337	80629337	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173863, intron 3 of 14)	intron (NM_173863, intron 3 of 14)	-7180.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	9.0	18.5	26.0	16.5	34.5	8.5
Merged-chr18-67736996-4	chr18	67736488	67737488	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12367.0	NM_008977	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	18.0	17.0	7.0	5.0	21.5	16.5
Merged-chr5-64835460-4	chr5	64834972	64835972	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31949.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25370417-4	chr15	25369914	25370914	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	43350.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-26828566-4	chr10	26828072	26829072	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	L3b|LINE|CR1	56060.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-44858309-4	chr12	44857802	44858802	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144552, intron 5 of 5)	intron (NM_144552, intron 5 of 5)	216181.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101172103-4	chr11	101171609	101172609	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346769)	promoter-TSS (NM_001346769)	-737.0	NM_001346769	217198.0	Mm.273254	NM_146030	ENSMUSG00000035172	Plekhh3	BC020025	pleckstrin homology domain containing, family H (with MyTH4 domain) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-109838817-4	chr7	109838305	109839305	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020052, intron 7 of 21)	intron (NM_020052, intron 7 of 21)	26874.0	NM_020052	56788.0	Mm.40447	NM_020052	ENSMUSG00000007279	Scube2	4932442O19Rik|Cegf1|Cegp1	signal peptide, CUB domain, EGF-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-63941723-4	chr7	63941218	63942218	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2803.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	7.0	41.0	15.0	1.5	32.5	11.5
Merged-chr7-29769904-4	chr7	29769386	29770386	+	990.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023750, intron 1 of 4)	intron (NM_023750, intron 1 of 4)	1334.0	NM_023750	74352.0	Mm.251083	NM_023750	ENSMUSG00000046185	Zfp84	2210410P13Rik|4633401C23Rik|AI415447|BB081605|C86188|KRAB18|Zfp69	zinc finger protein 84	protein-coding	3.5	46.5	22.0	16.5	46.0	37.0
Merged-chr7-19227396-4	chr7	19226909	19227909	+	990.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207525)	promoter-TSS (NM_207525)	-980.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	152.0	338.5	280.5	206.5	339.0	292.5
Merged-chr2-177206505-4	chr2	177205997	177206997	+	990.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	205541.0	NM_001362250	628147.0	Mm.374080	NM_001362250		Gm2004	100039000	predicted gene 2004	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13647840-4	chr8	13647365	13648365	+	990.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	29722.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	99.5	115.0	124.5	91.5	137.0	125.0
Merged-chr2-166826412-2	chr2	166825912	166826912	+	990.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085495, intron 1 of 38)	MIRb|SINE|MIR	20831.0	NM_001085495	99371.0	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76589320-4	chr11	76588781	76589781	+	990.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11542.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	68.5	83.5	87.5	15.0	79.5	42.0
Merged-chr5-122145925-4	chr5	122145448	122146448	+	990.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-7886.0	NM_183307	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	6.0	45.5	27.0	4.5	22.0	23.0
Merged-chr2-77238804-4	chr2	77238313	77239313	+	990.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175465, intron 3 of 17)	intron (NM_175465, intron 3 of 17)	41779.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166472749-2	chr2	166472249	166473249	+	990.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25298.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-31967759-4	chr12	31967263	31968263	+	990.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011158, intron 6 of 10)	intron (NM_011158, intron 6 of 10)	-17518.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	7.0	0.0	0.0	7.0	0.0	2.5
Merged-chr12-80107365-3	chr12	80106875	80107875	+	990.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007564)	TTS (NM_007564)	5638.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0.0	9.5	5.0	0.0	14.5	1.0
Merged-chr4-45455314-3	chr4	45454809	45455809	+	990.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 3 of 5)	intron (NM_001033306, intron 3 of 5)	-46543.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	0.0	0.0	2.0	0.0	0.0	2.0
Merged-chr2-143093859-4	chr2	143093357	143094357	+	990.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15464.0	NM_020595	57329.0	Mm.157751	NM_020595	ENSMUSG00000027416	Otor	CDRAP|Fdp|MIA|MIAL	otoraplin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-69595930-4	chr18	69595423	69596423	+	990.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	249763.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27863526-4	chr3	27863000	27864000	+	990.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32868.0	NM_001164437	208613.0	Mm.59189	NM_001164437	ENSMUSG00000043164	Tmem212	E030011K20Rik|Gm564	transmembrane protein 212	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44998665-4	chr7	44998089	44999089	+	990.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045611, intron 1 of 7)	intron (NR_045611, intron 1 of 7)	941.0	NM_016849	54131.0	Mm.3960	NM_016849	ENSMUSG00000003184	Irf3	C920001K05Rik|IRF-3	interferon regulatory factor 3	protein-coding	40.0	62.5	49.0	12.0	37.5	36.0
Merged-chr17-34123663-4	chr17	34123160	34124160	+	990.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010386, intron 1 of 5)	intron (NM_010386, intron 1 of 5)	828.0	NM_010386	14998.0	Mm.16373	NM_010386	ENSMUSG00000037649	H2-DMa	H-2Ma|H2-Ma	histocompatibility 2, class II, locus DMa	protein-coding	163.0	392.5	261.0	114.0	249.0	221.0
Merged-chr13-44869625-4	chr13	44869119	44870119	+	990.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205043, intron 3 of 17)	LSU-rRNA_Hsa|rRNA|rRNA	132477.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-14048669-4	chr10	14048175	14049175	+	990.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	82296.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.0	6.5	3.0	0.0	2.0	3.0
Merged-chr19-36349148-7	chr19	36348541	36349541	+	990.693848	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-30026.0	NM_029508	76073.0	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50560708-4	chr9	50560179	50561179	+	990.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025687, intron 1 of 4)	intron (NM_025687, intron 1 of 4)	589.0	NM_025687	66654.0	Mm.442255	NM_025687	ENSMUSG00000032065	Tex12	5730518K06Rik	testis expressed gene 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60789467-4	chr18	60788948	60789948	+	990.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14401.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	33.0	44.5	56.0	13.5	33.5	26.5
Merged-chr7-102246114-4	chr7	102245591	102246591	+	990.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	4027.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	17.5	36.5	38.5	20.0	51.0	48.0
Merged-chr9-3022204-4	chr9	3021696	3022696	+	990.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	16547.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121265577-3	chr9	121265075	121266075	+	990.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177589, intron 4 of 36)	intron (NM_177589, intron 4 of 36)	11597.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	0.0	0.0	1.0	2.5	2.5	3.0
Merged-chr5-148995262-4	chr5	148994771	148995771	+	990.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102383)	promoter-TSS (NR_102383)	-56.0	NR_102384	319982.0	Mm.33303	NR_102383	ENSMUSG00000106951	5930430L01Rik	-	RIKEN cDNA 5930430L01 gene	ncRNA	10.5	7.5	14.5	12.0	7.5	11.0
Merged-chr11-116784405-4	chr11	116783897	116784897	+	990.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8890.0	NM_011371	20445.0	Mm.436887	NM_011371	ENSMUSG00000009588	St6galnac1	Siat7a	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1	protein-coding	3.0	17.5	21.0	53.0	111.0	105.0
Merged-chr13-19828272-4	chr13	19827763	19828763	+	990.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4006.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	9.5	5.5	3.5	0.0	7.5	1.0
Merged-chr15-62055326-5	chr15	62054891	62055891	+	990.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	16134.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99247344-4	chr10	99246838	99247838	+	990.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-15893.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132748932-4	chr4	132748451	132749451	+	990.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133888, intron 1 of 7)	intron (NM_133888, intron 1 of 7)	8220.0	NM_133888	100340.0	Mm.287187	NM_133888	ENSMUSG00000028885	Smpdl3b	1110054A24Rik|AU045240|Asml3b	sphingomyelin phosphodiesterase, acid-like 3B	protein-coding	14.0	19.5	27.5	30.5	82.0	37.5
Merged-chr19-12011795-4	chr19	12011317	12012317	+	990.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24923.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103796556-4	chr2	103796110	103797110	+	990.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111292, intron 1 of 16)	CpG	468.0	NM_001111290	53872.0	Mm.427589	NM_016739	ENSMUSG00000027184	Caprin1	AL022980|Caprin-1|Gpiap|Gpiap1|Mmgpip137|P137|rng105	cell cycle associated protein 1	protein-coding	42.5	73.5	63.5	36.0	105.0	82.0
Merged-chr6-8420250-4	chr6	8419735	8420735	+	990.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302353, intron 4 of 4)	intron (NM_001302353, intron 4 of 4)	88926.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75701972-4	chr7	75701469	75702469	+	990.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 16 of 36)	intron (NM_029332, intron 16 of 36)	-146369.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29484845-4	chr6	29484306	29485306	+	990.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029985, intron 34 of 37)	intron (NM_001029985, intron 34 of 37)	13369.0	NM_001145360	668210.0	Mm.420607	NM_001145360	ENSMUSG00000090685	Gm9047	EG668210	predicted gene 9047	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-72797252-4	chr9	72796746	72797746	+	990.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10028.0	NM_175485	235472.0	Mm.31696	NM_175485	ENSMUSG00000036030	Prtg	A230098A12Rik|Igdcc5	protogenin	protein-coding	1.0	3.0	0.5	1.0	1.5	0.5
Merged-chr12-85471173-2	chr12	85470673	85471673	+	990.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2717.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53062343-2	chr4	53061841	53062841	+	990.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 31 of 49)	intron (NM_013454, intron 31 of 49)	50461.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	1.5	1.0
Merged-chr8-105332770-4	chr8	105332290	105333290	+	990.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 13 of 21)	intron (NM_177699, intron 13 of 21)	6426.0	NM_025486	66320.0	Mm.29990	NM_025486	ENSMUSG00000014856	Tmem208	1700006C06Rik|2610030K20Rik|Hspc171	transmembrane protein 208	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-102700358-4	chr13	102699863	102700863	+	990.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360519, intron 1 of 2)	intron (NM_001360519, intron 1 of 2)	6805.0	NM_008533	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	11.0	63.5	35.5	11.0	62.5	35.5
Merged-chr11-104231332-4	chr11	104230830	104231830	+	990.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010838)	promoter-TSS (NM_010838)	-106.0	NM_001038609	17762.0	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109341748-4	chr3	109341246	109342246	+	990.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 1 of 26)	intron (NM_020505, intron 1 of 26)	1063.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.5	2.5	2.0	0.0	0.0	0.5
Merged-chr11-29692233-4	chr11	29691715	29692715	+	990.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194053)	promoter-TSS (NM_194053)	-683.0	NM_194053	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	13.0	37.5	29.0	8.5	17.0	22.0
Merged-chr7-126643413-4	chr7	126642915	126643915	+	990.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-5894.0	NM_029339	75565.0	Mm.45686	NM_029339	ENSMUSG00000030714	Sgf29	1700023O11Rik|9530025I05Rik|Ccdc101	SAGA complex associated factor 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47924538-4	chr17	47923933	47924933	+	990.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001110824, exon 1 of 17)	5' UTR (NM_001110824, exon 1 of 17)	199.0	NM_028767	74123.0	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	10.0	6.0	6.5	10.0	6.0	6.5
Merged-chr6-108214734-4	chr6	108214239	108215239	+	990.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 2 of 61)	intron (NM_010585, intron 2 of 61)	1643.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	2.0	2.0	5.0	0.0	4.0	6.5
Merged-chr15-6705761-4	chr15	6705261	6706261	+	990.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2620.0	NM_030168	78757.0	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-107478143-4	chr8	107477630	107478630	+	990.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025830, intron 4 of 23)	intron (NM_025830, intron 4 of 23)	41732.0	NM_025830	66894.0	Mm.390058	NM_025830	ENSMUSG00000031930	Wwp2	1300010O06Rik|AA690238|AIP2|AW554328	WW domain containing E3 ubiquitin protein ligase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158132117-2	chr2	158131608	158132608	+	990.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 5 of 12)	intron (NM_009373, intron 5 of 12)	14284.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	2.5	21.5	2.5	6.5	12.5	2.0
Merged-chr1-77488145-3	chr1	77487663	77488663	+	990.6000369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007936, intron 3 of 17)	intron (NM_007936, intron 3 of 17)	8605.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	1.0	0.0	5.0	1.0	0.0	4.5
Merged-chr6-125294183-4	chr6	125293672	125294672	+	990.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	-8091.0	NM_009446	22144.0	Mm.270295	NM_009446	ENSMUSG00000067702	Tuba3a	AI528779|M[a]3|Tuba3	tubulin, alpha 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8515671-4	chr4	8515159	8516159	+	990.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19985.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-65019009-4	chr13	65018502	65019502	+	990.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14056.0	NM_001083890	238683.0	Mm.295543	NM_001083890	ENSMUSG00000074849	Spata31d1c	4932441B19Rik|Fam75d1c	spermatogenesis associated 31 subfamily D, member 1C	protein-coding	48.0	72.5	40.5	26.0	49.5	54.0
Merged-chr2-118554543-4	chr2	118553978	118554978	+	990.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4792.0	NM_138313	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	0.0	1.5	0.5	6.0	1.5	5.5
Merged-chr8-23207885-4	chr8	23207407	23208407	+	990.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018743, intron 1 of 12)	CpG	546.0	NM_018743	102247.0	Mm.200898	NM_018743	ENSMUSG00000031545	Gpat4	AU041707|AW545732|Agpat6|Tsarg7	glycerol-3-phosphate acyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110097347-4	chr7	110096752	110097752	+	990.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24807.0	NM_001355058	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62005083-4	chr11	62004593	62005593	+	990.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310526, intron 1 of 7)	intron (NM_001310526, intron 1 of 7)	48330.0	NM_001310526	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4920789-4	chr16	4920308	4921308	+	990.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 9 of 17)	intron (NM_001357062, intron 9 of 17)	-18303.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41764087-4	chr19	41763600	41764600	+	990.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17139.0	NR_040320	100502871.0	Mm.394485	NR_040320		Gm19424	-	predicted gene, 19424	ncRNA	11.0	12.0	16.5	2.5	0.5	0.5
Merged-chr4-99152355-4	chr4	99151853	99152853	+	990.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31438.0	NM_026082	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	61.0	92.5	98.0	61.0	103.0	118.5
Merged-chr16-17201197-7	chr16	17200672	17201672	+	990.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009456, intron 1 of 3)	CpG	320.0	NM_009456	22195.0	Mm.3074	NM_009456	ENSMUSG00000038965	Ube2l3	C79827|UbcM4|Ubce7	ubiquitin-conjugating enzyme E2L 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121427243-4	chr14	121426708	121427708	+	990.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47978.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0.0	0.0	1.5	0.0	1.5	2.5
Merged-chr11-116654487-3	chr11	116653987	116654987	+	990.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030206)	promoter-TSS (NM_030206)	-174.0	NM_030206	114886.0	Mm.34598	NM_030206	ENSMUSG00000020810	Cygb	3110001K20Rik|HGb|Staap	cytoglobin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14859657-4	chr8	14859249	14860249	+	990.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28787.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105259949-4	chr8	105259454	105260454	+	990.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033161, exon 3 of 5)	exon (NM_001033161, exon 3 of 5)	4640.0	NM_001033161	71609.0	Mm.264255	NM_001033161	ENSMUSG00000031887	Tradd	9130005N23Rik|AA930854	TNFRSF1A-associated via death domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-109288360-4	chr13	109287851	109288851	+	990.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-36393.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180432050-4	chr1	180431558	180432558	+	990.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081227)	TTS (NM_001081227)	51446.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119091073-4	chr11	119090585	119091585	+	990.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4848.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83703493-4	chr17	83702974	83703974	+	990.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2689.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119977039-4	chr9	119976529	119977529	+	990.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153287, exon 2 of 5)	exon (NM_153287, exon 2 of 5)	5994.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-20932821-4	chr5	20932311	20933311	+	990.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080977, intron 1 of 7)	PB1|SINE|Alu	-18178.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171019814-4	chr1	171019313	171020313	+	990.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144559, intron 2 of 4)	intron (NM_144559, intron 2 of 4)	887.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116100573-4	chr11	116100073	116101073	+	990.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9662.0	NM_001205081	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40586753-2	chr12	40586253	40587253	+	990.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	Lx7|LINE|L1	140700.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-87439137-4	chr12	87438662	87439662	+	990.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102565, intron 2 of 5)	intron (NM_001102565, intron 2 of 5)	-1405.0	NR_037228	100526546.0		NR_037228	ENSMUSG00000105428	Mir3068	mir-3068|mmu-mir-3068	microRNA 3068	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126793631-2	chr7	126793131	126794131	+	990.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1084.0	NM_019674	56420.0	Mm.41998	NM_019674	ENSMUSG00000030697	Ppp4c	1110002D08Rik|AU016079|PP-X|PP4C|Ppx|pp4	protein phosphatase 4, catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45562974-2	chr17	45562474	45563474	+	990.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357105)	promoter-TSS (NM_001357105)	-962.0	NM_001357105	73836.0	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53269577-2	chr4	53269077	53270077	+	990.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033139, intron 1 of 1)	RMER1B|Other|Other	655.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3388267-2	chr19	3387767	3388767	+	990.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039658)	promoter-TSS (NM_001039658)	-590.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-65328121-4	chr14	65327623	65328623	+	990.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30553.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	0.0	0.0	1.0	0.0	1.5	0.5
Merged-chr7-30265237-4	chr7	30264740	30265740	+	990.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_146186, exon 9 of 33)	exon (NM_146186, exon 9 of 33)	-14854.0	NR_144498	108167416.0	Mm.471845	NR_144498		LOC108167416	-	uncharacterized LOC108167416	ncRNA	45.0	63.5	27.5	36.5	57.0	76.5
Merged-chr18-75368571-2	chr18	75368071	75369071	+	990.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001042660, exon 1 of 4)	5' UTR (NM_001042660, exon 1 of 4)	1206.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82990438-2	chr15	82989938	82990938	+	990.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31142.0	NR_037241	100526477.0		NR_037241	ENSMUSG00000092751	Mir3080	mmu-mir-3080	microRNA 3080	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167744129-4	chr2	167743623	167744623	+	990.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52946.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80034984-2	chr10	80034484	80035484	+	990.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025554)	TTS (NM_025554)	4675.0	NM_025554	66420.0	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120270935-2	chr10	120270435	120271435	+	990.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	43875.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-12057606-2	chr2	12057106	12058106	+	990.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-243640.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-3401488-2	chr13	3400988	3401988	+	990.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-76815.0	NR_015522	76937.0	Mm.487240	NR_015522	ENSMUSG00000097709	2810429I04Rik	AI256682	RIKEN cDNA 2810429I04 gene	ncRNA	0.0	6.0	2.0	1.5	0.0	0.5
Merged-chr4-142098525-4	chr4	142098038	142099038	+	990.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14234.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	31.5	79.5	87.0	49.0	69.0	90.0
Merged-chr13-58446731-2	chr13	58446231	58447231	+	990.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43388.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108759969-2	chr12	108759469	108760469	+	990.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	-33342.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	8.5	6.0	1.0	8.5	6.0	1.0
Merged-chr7-126528327-2	chr7	126527827	126528827	+	990.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-24890.0	NM_183020	233871.0	Mm.231450	NM_183020	ENSMUSG00000032637	Atxn2l	A2D|A2LG|A2RP|A2lp|Atxnl2	ataxin 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78379442-2	chr17	78378942	78379942	+	990.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199448, intron 7 of 7)	intron (NM_199448, intron 7 of 7)	38710.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32086172-2	chr5	32085672	32086672	+	990.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50300.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84840490-2	chr2	84839990	84840990	+	990.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083809)	promoter-TSS (NM_001083809)	-136.0	NM_001083809	72401.0	Mm.22716	NM_024497	ENSMUSG00000027075	Slc43a1	2610016F07Rik|AA986141|Lat3|PB39|Pov1|R00504	solute carrier family 43, member 1	protein-coding	0.0	5.0	0.0	0.0	0.0	1.0
Merged-chr4-41194149-2	chr4	41193649	41194649	+	990.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026275)	TTS (NM_026275)	58128.0	NM_026275	67615.0	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	0.5	0.0	0.0	0.5	0.0	3.5
Merged-chr6-88861166-4	chr6	88860668	88861668	+	990.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347327, intron 2 of 7)	ORR1E|LTR|ERVL-MaLR	12876.0	NM_176973	319655.0	Mm.302613	NM_176973	ENSMUSG00000033152	Podxl2	D130074J02Rik|PODLX2	podocalyxin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84849551-2	chr18	84849051	84850051	+	990.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD2|LINE|L1	-1787.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24640800-6	chr10	24640361	24641361	+	990.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008813, exon 25 of 25)	3' UTR (NM_008813, exon 25 of 25)	45419.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-144940365-4	chr7	144939842	144940842	+	990.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007631)	promoter-TSS (NM_007631)	-417.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	4.0	33.0	29.5	6.5	24.0	9.5
Merged-chr13-58288024-4	chr13	58287531	58288531	+	990.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001360894, exon 15 of 15)	exon (NM_001360894, exon 15 of 15)	-13843.0	NM_019832	56278.0	Mm.296625	NM_019832	ENSMUSG00000021552	Gkap1	42kDa|4933400B15Rik|D13Ertd340e|Gkap42	G kinase anchoring protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27439344-4	chr3	27438857	27439857	+	990.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 24 of 26)	intron (NM_001356953, intron 24 of 26)	68006.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17878674-4	chr17	17878170	17879170	+	990.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013521, intron 1 of 1)	L1_Mus4|LINE|L1	5269.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-91051246-4	chr8	91050777	91051777	+	990.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001310530, exon 38 of 38)	exon (NM_001310530, exon 38 of 38)	-18780.0	NM_001282001	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	20.5	51.0	26.0	16.0	30.0	25.0
Merged-chr1-171057515-4	chr1	171057019	171058019	+	990.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356511, intron 3 of 4)	intron (NM_001356511, intron 3 of 4)	1875.0	NM_001356511	14131.0	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	11.0	71.0	52.5	22.0	48.5	38.5
Merged-chr11-68443490-4	chr11	68443019	68444019	+	990.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	11394.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-76256597-4	chr13	76256127	76257127	+	990.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-128334.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	4.5	4.5	17.5	33.0	52.0	47.0
Merged-chr19-10881754-4	chr19	10881236	10882236	+	990.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134142)	promoter-TSS (NM_134142)	7.0	NM_134142	68539.0	Mm.251890	NM_134142	ENSMUSG00000034659	Tmem109	1110006I15Rik|AA958958|C77652	transmembrane protein 109	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-99478766-4	chr4	99478252	99479252	+	990.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-177547.0	NM_010425	15221.0	Mm.4758	NM_010425	ENSMUSG00000067261	Foxd3	CWH3|Genesis|Hfh2	forkhead box D3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40765128-3	chr9	40764645	40765645	+	990.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 2 of 6)	B2_Mm2|SINE|B2	-36128.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	22.0	46.5	30.0	1.0	45.0	35.0
Merged-chr7-12987407-3	chr7	12986903	12987903	+	990.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009512)	TTS (NM_009512)	9555.0	NM_001168561	269870.0	Mm.62083	NM_175558	ENSMUSG00000033961	Zfp446	A630035I11Rik|A930031C22|AA120513|AV306632	zinc finger protein 446	protein-coding	3.5	18.0	11.0	0.0	5.5	3.5
Merged-chr9-106394870-3	chr9	106394371	106395371	+	990.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26239.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	0.0	5.5	5.0	0.5	0.0	1.0
Merged-chr14-58072142-4	chr14	58071581	58072581	+	990.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013518)	promoter-TSS (NM_013518)	-605.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35186165-7	chr17	35185661	35186661	+	990.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010734, intron 3 of 3)	intron (NM_010734, intron 3 of 3)	2279.0	NM_010734	16988.0	Mm.19379	NM_010734	ENSMUSG00000073412	Lst1	B144	leukocyte specific transcript 1	protein-coding	26.0	58.0	87.0	44.5	62.0	61.5
Merged-chr7-128237282-4	chr7	128236776	128237776	+	990.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146205)	promoter-TSS (NM_146205)	-81.0	NM_146205	233912.0	Mm.475117	NM_146205	ENSMUSG00000042178	Armc5	AW049683|BC032200	armadillo repeat containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-79981132-3	chr18	79980631	79981631	+	990.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65764.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	46.0	13.5	10.0	43.5	29.0	30.5
Merged-chr18-30583634-4	chr18	30583132	30584132	+	990.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	310767.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	12.5	3.5	8.5	17.5	12.5	3.5
Merged-chr3-157635859-4	chr3	157635366	157636366	+	990.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011196, intron 2 of 2)	intron (NM_011196, intron 2 of 2)	68974.0	NM_011196	19218.0	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74308820-4	chr1	74308335	74309335	+	990.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039509, intron 2 of 9)	RMER2|LTR|ERV1	-4499.0	NM_027154	69660.0	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126824835-4	chr8	126824334	126825334	+	990.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24186.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	1.0	21.5	12.5	19.5	13.5	12.5
Merged-chr9-70650466-4	chr9	70649954	70650954	+	990.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172772, intron 1 of 8)	intron (NM_172772, intron 1 of 8)	6720.0	NM_172772	235461.0	Mm.170855	NM_172772	ENSMUSG00000042444	Mindy2	AI465301|B230380D07Rik|Fam63b|mKIAA1164	MINDY lysine 48 deubiquitinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34794010-4	chr13	34793531	34794531	+	990.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	54389.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124219311-4	chr8	124218821	124219821	+	990.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC4|LINE|L1	-12073.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	32.0	77.0	44.5	28.5	96.0	61.5
Merged-chr5-96854652-2	chr5	96854140	96855140	+	990.416626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	61255.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	16.5	28.5	9.0	21.5	46.0	32.5
Merged-chr3-27461269-4	chr3	27460767	27461767	+	990.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 18 of 26)	intron (NM_001356953, intron 18 of 26)	89916.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145359782-3	chr6	145359426	145360426	+	990.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27699.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	0.0	0.0	5.5	68.5	204.5	188.5
Merged-chr19-10869747-4	chr19	10869200	10870200	+	990.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133804)	promoter-TSS (NM_133804)	79.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157094086-3	chr2	157093563	157094563	+	990.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177439, intron 4 of 5)	intron (NM_001177439, intron 4 of 5)	7008.0	NM_001177439	383766.0	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96334822-4	chr10	96334341	96335341	+	990.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108634.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108827763-4	chr6	108827257	108828257	+	990.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138677)	promoter-TSS (NM_138677)	-884.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	4.5	21.5	14.0	8.5	28.5	15.0
Merged-chr17-17454828-4	chr17	17454361	17455361	+	990.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025681, intron 5 of 5)	intron (NM_025681, intron 5 of 5)	52175.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100494721-4	chr7	100494240	100495240	+	990.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011671, intron 2 of 7)	intron (NM_011671, intron 2 of 7)	1382.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	64.0	180.0	67.0	77.0	214.5	125.0
Merged-chr15-99093455-4	chr15	99092955	99093955	+	990.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5727.0	NM_001024702	239659.0	Mm.309917	NM_001024702	ENSMUSG00000001076	C1ql4	C1qtnf11|CTRP11	complement component 1, q subcomponent-like 4	protein-coding	1.0	0.0	1.5	0.0	0.0	0.0
Merged-chr15-53419899-2	chr15	53419399	53420399	+	990.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73716.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116448921-2	chr4	116448421	116449421	+	990.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042743, intron 1 of 29)	intron (NM_001042743, intron 1 of 29)	15260.0	NM_001042743	17776.0	Mm.9287	NM_008641	ENSMUSG00000003810	Mast2	MAST205|Mtssk	microtubule associated serine/threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147236143-2	chr4	147235643	147236643	+	990.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	L1_Mus3|LINE|L1	60277.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113515281-4	chr13	113514788	113515788	+	990.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12444.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67607569-4	chr18	67607104	67608104	+	990.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33751.0	NM_001357523	225659.0	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	21.0	38.0	31.5	52.5	33.5	34.5
Merged-chr13-55892488-4	chr13	55891982	55892982	+	990.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61057.0	NM_011097	18740.0	Mm.135195	NM_011097	ENSMUSG00000021506	Pitx1	Bft|P-OTX|Potx|Ptx1	paired-like homeodomain transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153748522-4	chr1	153748018	153749018	+	990.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011882)	promoter-TSS (NM_011882)	-908.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-130337630-3	chr6	130337105	130338105	+	990.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289605)	promoter-TSS (NM_001289605)	21.0	NM_001289605	16634.0	Mm.425338	NM_010648	ENSMUSG00000067591	Klra3	5E6|Ly49c|NK-2.1|Nk-2|Nk2|Nk2.1	killer cell lectin-like receptor, subfamily A, member 3	protein-coding	0.0	0.0	1.5	0.0	0.5	1.5
Merged-chr17-55761228-4	chr17	55760722	55761722	+	990.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139138, intron 2 of 16)	MERV1_LTR|LTR|ERV1	11238.0	NM_139138	52614.0	Mm.210497	NM_139138	ENSMUSG00000032915	Adgre4	D17Ertd479e|Egf-tm7|Emr4|Fire|Gpr127	adhesion G protein-coupled receptor E4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32373356-4	chr4	32372819	32373819	+	990.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44116.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	1.0	11.5	4.0	3.5	0.0	0.5
Merged-chr10-93889795-4	chr10	93889252	93890252	+	990.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019648, exon 2 of 12)	5' UTR (NM_019648, exon 2 of 12)	1450.0	NM_019648	56307.0	Mm.289329	NM_019648	ENSMUSG00000036112	Metap2	4930584B20Rik|A930035J23Rik|AI047573|AL024412|AU014659|Amp2|Mnpep|p67|p67eIF2	methionine aminopeptidase 2	protein-coding	14.5	53.5	36.5	3.5	27.0	25.5
Merged-chr18-80322683-7	chr18	80322121	80323121	+	990.2976070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001190373, exon 3 of 4)	exon (NM_001190373, exon 3 of 4)	41633.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55432509-4	chr13	55431989	55432989	+	990.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-5685.0	NM_021489	58992.0	Mm.42224	NM_021489	ENSMUSG00000021492	F12	FXII|HAF	coagulation factor XII (Hageman factor)	protein-coding	19.0	9.5	5.0	2.5	0.5	4.0
Merged-chr12-9007224-4	chr12	9006721	9007721	+	990.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172470, intron 15 of 27)	intron (NM_172470, intron 15 of 27)	-22776.0	NM_029321	75516.0	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86257591-4	chr11	86257114	86258114	+	990.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027421)	promoter-TSS (NM_027421)	-46.0	NM_027421	70422.0	Mm.171304	NM_027421	ENSMUSG00000018068	Ints2	2810417D08Rik|AA408260|AI987735|mKIAA1287	integrator complex subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67548278-6	chr10	67547813	67548813	+	990.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001005419, exon 1 of 1)	exon (NM_001005419, exon 1 of 1)	642.0	NM_001005419	211488.0	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36621247-3	chr16	36620726	36621726	+	990.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 2 of 7)	intron (NM_019388, intron 2 of 7)	44851.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-43767107-4	chr11	43766602	43767602	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-19129.0	NM_133795	66827.0	Mm.271974	NM_133795	ENSMUSG00000041278	Ttc1	4833412C19Rik|C79328|TPR1	tetratricopeptide repeat domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-97660979-6	chr1	97660484	97661484	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355072, exon 1 of 3)	5' UTR (NM_001355072, exon 1 of 3)	692.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20914123-4	chr11	20913607	20914607	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82999.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	5.5	2.5	0.0	0.0	2.0	0.0
Merged-chr1-152585720-4	chr1	152585223	152586223	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	39494.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147960381-4	chr4	147959900	147960900	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19505.0	NM_029841	77034.0	Mm.183076	NM_029841	ENSMUSG00000044496	2510039O18Rik	Kiaa2013	RIKEN cDNA 2510039O18 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125282697-4	chr8	125282181	125283181	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	210152.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	16.5	18.0	29.5	17.5	13.5	35.5
Merged-chr12-86906547-4	chr12	86905967	86906967	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21653.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-91178833-4	chr15	91178337	91179337	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011994, intron 4 of 9)	intron (NM_011994, intron 4 of 9)	13170.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121371630-4	chr3	121371132	121372132	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54909.0	NM_028044	71994.0	Mm.275555	NM_028044	ENSMUSG00000053931	Cnn3	1600014M03Rik|C85854|Calpo3	calponin 3, acidic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23104096-4	chr16	23103604	23104604	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-3364.0	NR_152586	13682.0	Mm.260084	NM_013506	ENSMUSG00000022884	Eif4a2	4833432N07Rik|BM-010|Ddx2b|Eif4|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87623884-4	chr1	87623406	87624406	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	3594.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25623143-4	chr15	25622630	25623630	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 1 of 40)	CpG	580.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124637257-4	chr6	124636750	124637750	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1165.0	NM_173864	317677.0	Mm.483270	NM_173864	ENSMUSG00000079343	C1s2	C1sb|EG317677|Gm5077	complement component 1, s subcomponent 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40663260-4	chr19	40662766	40663766	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	3496.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	24.0	46.5	35.5	30.0	18.5	28.0
Merged-chr19-11102119-4	chr19	11101634	11102634	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027058, intron 5 of 6)	intron (NM_027058, intron 5 of 6)	-21031.0	NM_022430	64381.0	Mm.34460	NM_022430	ENSMUSG00000024730	Ms4a8a	2010004L09Rik|AI481240|CD20L5|Ms4a8	membrane-spanning 4-domains, subfamily A, member 8A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21054735-4	chr5	21054241	21055241	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011203, intron 1 of 17)	intron (NM_011203, intron 1 of 17)	1170.0	NM_001356591	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95996120-4	chr3	95995631	95996631	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023320)	promoter-TSS (NM_023320)	-292.0	NM_023320	67220.0	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44519168-9	chr11	44518798	44519798	+	990.2222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166553)	promoter-TSS (NM_001166553)	-79.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-136742898-4	chr3	136742396	136743396	+	990.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	72830.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30152298-4	chr14	30151777	30152777	+	990.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 8 of 46)	intron (NM_001083616, intron 8 of 46)	129644.0	NM_175343	218865.0	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87329971-4	chr3	87329483	87330483	+	990.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-27898.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	45.5	179.5	123.0	33.0	58.5	33.5
Merged-chr16-87655205-4	chr16	87654697	87655697	+	990.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43757.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	5.5	8.5	8.0	4.5	16.5	8.0
Merged-chr10-80744447-4	chr10	80743977	80744977	+	990.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-2202.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54990444-6	chr18	54990018	54991018	+	990.194458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175751)	promoter-TSS (NM_175751)	-338.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129230407-4	chr6	129229911	129230911	+	990.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7634.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75370591-2	chr18	75370091	75371091	+	990.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042660, intron 1 of 3)	intron (NM_001042660, intron 1 of 3)	3226.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122629195-4	chr2	122628708	122629708	+	990.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1417.0	NM_001033256	214616.0	Mm.271306	NM_001033256		Spata5l1	AV141009|C130039A10Rik	spermatogenesis associated 5-like 1	protein-coding	9.5	2.0	7.0	8.0	14.0	7.5
Merged-chr5-90682071-4	chr5	90681555	90682555	+	990.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41528.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165641603-4	chr1	165641111	165642111	+	990.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7070.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91272996-4	chr2	91272476	91273476	+	990.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001311144)	TTS (NM_001311144)	7861.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	4.0	16.0	4.0	1.0	14.5	16.0
Merged-chr8-94955292-4	chr8	94954813	94955813	+	990.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-21796.0	NM_001198894	14766.0	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0.0	15.0	12.0	2.0	0.0	7.0
Merged-chr5-92491014-4	chr5	92490527	92491527	+	990.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	14630.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-13598465-4	chr6	13597961	13598961	+	990.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155435, intron 1 of 3)	intron (NR_155435, intron 1 of 3)	9637.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	19.5	44.0	26.5	20.5	35.5	35.5
Merged-chr1-155442650-2	chr1	155442150	155443150	+	990.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25206.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-3025531-4	chr9	3025031	3026031	+	990.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	13212.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-143146971-4	chr6	143146465	143147465	+	990.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153819, intron 5 of 8)	intron (NR_153819, intron 5 of 8)	6966.0	NR_153819	102633311.0	Mm.333484	NR_153819		Gm31108	Gm31169	predicted gene, 31108	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31342701-4	chr15	31342195	31343195	+	990.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027496, intron 1 of 3)	intron (NM_027496, intron 1 of 3)	25064.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86732269-4	chr17	86731775	86732775	+	990.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21589.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.0	7.5	11.0	1.0	7.5	21.5
Merged-chr14-33319708-4	chr14	33319224	33320224	+	990.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 4 of 10)	CpG	91300.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102434608-2	chr12	102434108	102435108	+	990.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	ORR1A2|LTR|ERVL-MaLR	5205.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	10.0	11.5	6.0	11.0	24.0	18.0
Merged-chr17-56814532-4	chr17	56814039	56815039	+	990.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009056, intron 1 of 16)	intron (NM_009056, intron 1 of 16)	16469.0	NM_009056	19725.0	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-48528697-4	chr13	48528200	48529200	+	990.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7414.0	NR_029656	387247.0		NR_029656	ENSMUSG00000065453	Mirlet7d	Mirnlet7d|let-7d|mmu-let-7d	microRNA let7d	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55125098-4	chr13	55124608	55125608	+	990.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012017, intron 5 of 6)	intron (NM_012017, intron 5 of 6)	19799.0	NM_012017	26919.0	Mm.22795	NM_012017	ENSMUSG00000021481	Zfp346	Jaz|Znf346	zinc finger protein 346	protein-coding	8.0	3.5	3.0	3.5	5.0	5.0
Merged-chr12-85492287-4	chr12	85491805	85492805	+	990.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18415.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6779804-2	chr17	6779304	6780304	+	990.0833130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 1 of 12)	intron (NM_009510, intron 1 of 12)	2976.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118103061-4	chr11	118102568	118103568	+	990.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167746, intron 20 of 80)	intron (NM_001167746, intron 20 of 80)	26151.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113978463-4	chr6	113977978	113978978	+	990.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009723, intron 2 of 21)	intron (NM_009723, intron 2 of 21)	-43797.0	NM_001347365	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60977990-4	chr18	60977499	60978499	+	990.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009792, exon 4 of 7)	exon (NM_009792, exon 4 of 7)	14445.0	NM_001286809	12322.0	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-77550347-4	chr8	77549846	77550846	+	990.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081240, intron 1 of 11)	MER20|DNA|hAT-Charlie	949.0	NM_001081240	102182.0	Mm.197630	NM_178903	ENSMUSG00000037134	Prmt9	AI931714|Prmt10	protein arginine methyltransferase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-51692920-3	chr15	51692421	51693421	+	990.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	172540.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108958124-4	chr3	108957625	108958625	+	990.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001078646, intron 6 of 7)	intron (NM_001078646, intron 6 of 7)	17568.0	NM_001078646	66715.0	Mm.158124	NM_025723	ENSMUSG00000045662	Henmt1	4921515J06Rik|Hen1|mHEN1	HEN1 methyltransferase homolog 1 (Arabidopsis)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30714804-4	chr13	30714326	30715326	+	990.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34407.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151457309-4	chr1	151456809	151457809	+	990.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026876, intron 13 of 14)	intron (NM_026876, intron 13 of 14)	14916.0	NR_106150	102466847.0		NR_106150	ENSMUSG00000106406	Mir7682	mmu-mir-7682	microRNA 7682	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3357012-4	chr12	3356496	3357496	+	990.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8136.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50752387-4	chr16	50751885	50752885	+	990.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19612.0	NR_028300	68190.0	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152788961-4	chr2	152788482	152789482	+	990.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	34809.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-121075903-6	chr7	121075428	121076428	+	990.0277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021554, intron 4 of 4)	intron (NM_021554, intron 4 of 4)	-1398.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-62940787-4	chr16	62940293	62941293	+	990.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86486.0	NM_011173	19128.0	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108820760-3	chr8	108820252	108821252	+	990.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 3 of 9)	intron (NM_007496, intron 3 of 9)	106108.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.0	0.0	1.0	3.0	6.5	5.0
Merged-chr10-13276540-3	chr10	13276063	13277063	+	990.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359294, intron 2 of 11)	intron (NM_001359294, intron 2 of 11)	47726.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124534808-2	chr5	124534308	124535308	+	990.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-3417.0	NM_021430	75695.0	Mm.41180	NM_021430	ENSMUSG00000029392	Rilpl1	2900002H16Rik|6330559I19Rik|GOSPEL	Rab interacting lysosomal protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168579266-4	chr2	168578763	168579763	+	990.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291169, intron 1 of 10)	intron (NM_001291169, intron 1 of 10)	11102.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	1.0	10.5	6.0	2.0	1.0	10.0
Merged-chr4-135277018-2	chr4	135276518	135277518	+	990.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4258.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96705763-4	chr9	96705272	96706272	+	990.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359959, intron 2 of 2)	intron (NM_001359959, intron 2 of 2)	13673.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-156234400-2	chr4	156233900	156234900	+	990.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198305, intron 1 of 11)	intron (NM_198305, intron 1 of 11)	457.0	NM_198305	231003.0	Mm.423038	NM_198305	ENSMUSG00000078485	Klhl17	AL022703|BC058738	kelch-like 17	protein-coding	0.0	3.5	2.5	0.0	0.0	2.5
Merged-chr9-107645197-2	chr9	107644697	107645697	+	990.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9855.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	1.0	0.0	1.0	1.5	6.0	0.0
Merged-chr12-85468042-2	chr12	85467542	85468542	+	990.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5848.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65352225-1	chr3	65351725	65352725	+	990.0	f1_c57bl6.idr	intron (NM_001357358, intron 8 of 13)	MER5B|DNA|hAT-Charlie	-2796.0	NR_040390	319798.0	Mm.445698	NR_040390		A730090N16Rik	-	RIKEN cDNA A730090N16 gene	ncRNA	7.0	0.0	4.5	3.0	3.5	1.0
Merged-chr13-56177665-2	chr13	56177166	56178166	+	990.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168615, intron 1 of 2)	intron (NM_001168615, intron 1 of 2)	1219.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	13.0	50.5	38.5	37.0	55.0	43.5
Merged-chr9-95640169-4	chr9	95639754	95640754	+	990.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 2 of 8)	intron (NM_029620, intron 2 of 8)	2626.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73688235-2	chr12	73687735	73688735	+	990.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	103439.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47357249-1	chr19	47356749	47357749	+	990.0	f1_c57bl6.idr	intron (NM_008018, intron 5 of 14)	intron (NM_008018, intron 5 of 14)	-83660.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	5.5	0.5	4.0	0.0	1.5	3.5
Merged-chr2-164835038-4	chr2	164834538	164835538	+	990.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038492, intron 5 of 14)	intron (NM_001038492, intron 5 of 14)	1265.0	NM_008906	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99226082-2	chr5	99225582	99226582	+	990.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 10 of 13)	L3|LINE|CR1	26845.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	3.5	3.0	1.5	0.0	6.0	2.0
Merged-chr4-6416176-4	chr4	6415685	6416685	+	990.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 21 of 30)	intron (NM_010945, intron 21 of 30)	38086.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0.0	4.5	0.0	2.0	1.0	1.5
Merged-chr16-31746681-2	chr16	31746181	31747181	+	990.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357281, intron 2 of 22)	RMER1A|Other|Other	-7669.0	NM_001252436	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37657264-4	chr9	37656773	37657773	+	990.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025289)	promoter-TSS (NM_025289)	39.0	NM_025289	21376.0	Mm.28689	NM_025289	ENSMUSG00000011114	Tbrg1	AA408552|AA409675|Niam|Tb-5|mFLJ00213	transforming growth factor beta regulated gene 1	protein-coding	5.0	10.0	5.5	0.0	16.5	8.0
Merged-chr4-98924233-4	chr4	98923711	98924711	+	990.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_146144, exon 1 of 9)	5' UTR (NM_146144, exon 1 of 9)	401.0	NM_001356424	230484.0	Mm.371692	NM_146144	ENSMUSG00000028560	Usp1	-	ubiquitin specific peptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124862989-1	chr5	124862489	124863489	+	990.0	f0_balb.idr	promoter-TSS (NM_144819)	promoter-TSS (NM_144819)	284.0	NM_001081750	269704.0	Mm.138617	NM_001081750	ENSMUSG00000079215	Zfp664	AW060232|D930038J03Rik|ZFOC1|Znf664	zinc finger protein 664	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99151991-2	chr7	99151491	99152491	+	990.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10847.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr10-127640660-2	chr10	127640235	127641235	+	990.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2251.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	2.0	0.0	0.0	9.0	0.0	0.0
Merged-chr4-109981723-2	chr4	109981223	109982223	+	990.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172296, exon 3 of 3)	exon (NM_172296, exon 3 of 3)	3698.0	NM_172296	242620.0	Mm.32825	NM_172296	ENSMUSG00000047143	Dmrta2	Dmrt5	doublesex and mab-3 related transcription factor like family A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45677415-4	chr14	45676890	45677890	+	989.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19247.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	38.0	52.0	43.0	41.5	65.0	52.0
Merged-chr8-81806980-4	chr8	81806481	81807481	+	989.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024617, intron 7 of 24)	intron (NM_001024617, intron 7 of 24)	464419.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.0	1.0	0.0	0.5	0.0	0.0
Merged-chr2-127524583-4	chr2	127524057	127525057	+	989.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2463.0	NR_110989	56461.0	Mm.315292	NM_019789	ENSMUSG00000079056	Kcnip3	4933407H12Rik|AI413860|Csen|DREAM|KChIP3|R74849	Kv channel interacting protein 3, calsenilin	protein-coding	2.0	18.0	7.5	5.0	0.5	7.5
Merged-chr8-125461770-4	chr8	125461274	125462274	+	989.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 10 of 21)	intron (NM_001357372, intron 10 of 21)	31059.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	37.5	124.5	66.5	14.0	23.0	19.5
Merged-chr9-72111213-4	chr9	72110672	72111672	+	989.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253862)	promoter-TSS (NM_001253862)	29.0	NM_001253862	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23438100-4	chr13	23437561	23438561	+	989.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7044.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-33219348-4	chr5	33218829	33219829	+	989.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1091.0	NM_133903	100689.0	Mm.34694	NM_133903	ENSMUSG00000037379	Spon2	2310045I24Rik|AI504350|M-spondin|Mindin|Mspondin	spondin 2, extracellular matrix protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110542095-3	chr11	110541591	110542591	+	989.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62751.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	10.5	7.5	19.0	25.0	13.0	20.5
Merged-chr17-9773941-3	chr17	9773440	9774440	+	989.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045433, intron 2 of 3)	intron (NR_045433, intron 2 of 3)	1926.0	NR_045433	71092.0	Mm.243827	NR_045433		4930452A19Rik	4933424P20Rik	RIKEN cDNA 4930452A19 gene	ncRNA	0.0	0.0	0.0	0.0	1.5	6.0
Merged-chr10-128458518-4	chr10	128458014	128459014	+	989.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106183)	promoter-TSS (NR_106183)	-166.0	NR_106183	102465894.0		NR_106183	ENSMUSG00000098957	Mir8105	Gm27346|mmu-mir-8105	microRNA 8105	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-50642409-4	chr2	50641910	50642910	+	989.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-267274.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107081473-4	chr3	107080980	107081980	+	989.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20087.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128493054-4	chr10	128492596	128493596	+	989.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317220)	promoter-TSS (NM_001317220)	-87.0	NM_001317219	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-97129313-4	chr13	97128814	97129814	+	989.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_021552)	TTS (NM_021552)	8612.0	NM_021552	59050.0	Mm.390634	NM_021552	ENSMUSG00000060739	Nsa2	5730427N09Rik|LNR42|Nsa2p|Tinp1|Yr29	NSA2 ribosome biogenesis homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80054699-4	chr10	80054201	80055201	+	989.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008162, exon 3 of 7)	exon (NM_008162, exon 3 of 7)	682.0	NM_001037741	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51931395-4	chr11	51930889	51931889	+	989.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-36242.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33929484-4	chr17	33928967	33929967	+	989.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009059)	promoter-TSS (NM_009059)	-427.0	NM_009059	19732.0	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	62.0	120.5	102.0	41.0	101.0	77.5
Merged-chr11-119047652-2	chr11	119047145	119048145	+	989.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6732.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr15-36716105-8	chr15	36715608	36716608	+	989.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74824.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136088024-4	chr5	136087531	136088531	+	989.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039103, intron 1 of 19)	intron (NM_001039103, intron 1 of 19)	4115.0	NM_001039103	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-47398048-4	chr11	47397542	47398542	+	989.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18740.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22857287-4	chr11	22856768	22857768	+	989.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	2467.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146162794-4	chr6	146162295	146163295	+	989.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 52 of 56)	intron (NM_019923, intron 52 of 56)	228673.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-58463178-4	chr4	58462687	58463687	+	989.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172989, intron 3 of 3)	intron (NM_172989, intron 3 of 3)	-22089.0	NR_037278	100526502.0		NR_037278	ENSMUSG00000093293	Mir3095	mir-3095|mmu-mir-3095	microRNA 3095	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91092617-4	chr1	91092105	91093105	+	989.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 9 of 22)	intron (NM_008515, intron 9 of 22)	39161.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61373691-3	chr9	61373239	61374239	+	989.866699	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083928, intron 1 of 19)	CpG	1373.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51856483-9	chr11	51856034	51857034	+	989.858032	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357588, intron 1 of 12)	CpG	947.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-117025810-7	chr13	117025283	117026283	+	989.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081009)	promoter-TSS (NM_001081009)	-267.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	7.0	4.5	8.5	7.0	4.5	9.5
Merged-chr7-82811228-4	chr7	82810729	82811729	+	989.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55585.0	NR_046004	77800.0	Mm.444811	NR_046004	ENSMUSG00000086690	4933406J10Rik	A930009F24Rik	RIKEN cDNA 4933406J10 gene	ncRNA	43.0	96.0	43.0	14.5	37.0	16.0
Merged-chr9-22050764-2	chr9	22050264	22051264	+	989.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010487, intron 1 of 6)	CpG	1259.0	NM_010487	15571.0	Mm.390167	NM_010487	ENSMUSG00000003410	Elavl3	2600009P04Rik|Huc|PLE21|mHuC	ELAV like RNA binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75342289-4	chr18	75341787	75342787	+	989.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24801.0	NR_155535	102636262.0	Mm.421168	NR_155535		Gm20544	-	predicted gene 20544	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126755920-4	chr8	126755403	126756403	+	989.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93117.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	12.0	38.5	21.5	19.5	32.5	22.5
Merged-chr2-90474986-4	chr2	90474484	90475484	+	989.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001135657, exon 2 of 26)	exon (NM_001135657, exon 2 of 26)	4190.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97310144-4	chr11	97309650	97310650	+	989.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-5566.0	NM_025927	67036.0	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23855547-4	chr11	23855050	23856050	+	989.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39720.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134081318-4	chr1	134080823	134081823	+	989.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2168.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-40944260-4	chr13	40943772	40944772	+	989.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133219, intron 1 of 2)	RMER10A|LTR|ERVL	26638.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17828744-2	chr17	17828244	17829244	+	989.8000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1444.0	NR_029536	387230.0		NR_029536	ENSMUSG00000065396	Mir99b	Mirn99b|mmu-mir-99b	microRNA 99b	ncRNA	3.0	3.5	3.0	0.0	7.0	6.5
Merged-chr2-128359216-4	chr2	128358689	128359689	+	989.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028590, intron 1 of 2)	ORR1D2|LTR|ERVL-MaLR	70162.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	8.5	49.0	36.5	11.5	61.0	33.0
Merged-chr1-86228940-4	chr1	86228462	86229462	+	989.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027456, intron 19 of 20)	intron (NM_027456, intron 19 of 20)	74182.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83166806-4	chr15	83166306	83167306	+	989.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029787, intron 1 of 8)	intron (NM_029787, intron 1 of 8)	5402.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-127257203-4	chr1	127256687	127257687	+	989.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 2 of 17)	MER77B|LTR|ERVL	52201.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-56616554-4	chr13	56616070	56617070	+	989.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155548, intron 2 of 16)	intron (NR_155548, intron 2 of 16)	6984.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35736620-3	chr17	35736090	35737090	+	989.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-31991.0	NM_007584	12305.0	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	11.0	25.5	2.5	0.0	0.0	0.0
Merged-chr17-85495532-3	chr17	85495026	85496026	+	989.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122870.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-13192323-4	chr4	13191713	13192713	+	989.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	285376.0	NM_001171801	208820.0	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	3.0	0.5	4.5	2.5	0.5	4.0
Merged-chr8-95142610-4	chr8	95142072	95143072	+	989.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145831)	promoter-TSS (NM_001145831)	-32.0	NM_001145831	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-162573914-4	chr1	162573421	162574421	+	989.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016796, intron 1 of 7)	MIRc|SINE|MIR	3093.0	NM_016796	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	29.0	65.5	57.5	20.0	84.5	74.0
Merged-chr19-10690593-4	chr19	10690087	10691087	+	989.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	intron (NM_001361958, intron 1 of 4)	1852.0	NM_001361959	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40435569-4	chr10	40435062	40436062	+	989.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198164, intron 3 of 11)	intron (NM_198164, intron 3 of 11)	86254.0	NM_001291816	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-46821607-4	chr12	46821150	46822150	+	989.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2875.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	5.0	0.0	1.5	7.0	0.0	2.0
Merged-chr2-34783472-4	chr2	34782951	34783951	+	989.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145522, intron 6 of 7)	intron (NM_145522, intron 6 of 7)	11361.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34473227-4	chr1	34472759	34473759	+	989.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011206, intron 13 of 14)	intron (NM_011206, intron 13 of 14)	13513.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31029924-4	chr16	31029422	31030422	+	989.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 2 of 3)	intron (NM_198626, intron 2 of 3)	51510.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	33.0	83.0	61.0	8.0	57.0	63.0
Merged-chr7-16892209-4	chr7	16891723	16892723	+	989.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010320, exon 1 of 4)	5' UTR (NM_010320, exon 1 of 4)	437.0	NM_010320	14709.0	Mm.103770	NM_010320	ENSMUSG00000063594	Gng8	G(y)8	guanine nucleotide binding protein (G protein), gamma 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-14053234-4	chr10	14052746	14053746	+	989.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	86867.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	2.5	22.0	3.5	4.0	11.0	2.0
Merged-chr16-87585772-4	chr16	87585264	87586264	+	989.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144854, intron 4 of 4)	L1MB8|LINE|L1	32434.0	NM_144854	224419.0	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	0.0	7.0	4.0	1.5	4.5	11.5
Merged-chr5-147046484-3	chr5	147045988	147046988	+	989.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	30084.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	2.0	0.0	4.0	2.0	1.5	7.5
Merged-chr4-32359352-3	chr4	32358859	32359859	+	989.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58076.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80207422-4	chr7	80206902	80207902	+	989.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	8961.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	3.5	8.5	2.0	6.5	0.0	7.5
Merged-chr16-94574149-4	chr16	94573658	94574658	+	989.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	3251.0	NM_001113389	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-31812389-4	chr11	31811898	31812898	+	989.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102312, intron 1 of 4)	intron (NR_102312, intron 1 of 4)	12149.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	18.0	17.5	19.5	16.5	4.0	4.5
Merged-chr3-88443067-4	chr3	88442564	88443564	+	989.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013658, intron 10 of 14)	intron (NM_013658, intron 10 of 14)	-2113.0	NR_105978	102465611.0		NR_105978	ENSMUSG00000098655	Mir7011	Gm27677|mmu-mir-7011	microRNA 7011	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112673093-4	chr12	112672602	112673602	+	989.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331107, intron 1 of 13)	intron (NM_001331107, intron 1 of 13)	1174.0	NM_001165894	11651.0	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43808185-4	chr5	43807675	43808675	+	989.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-10718.0	NM_009763	12182.0	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	11.0	11.0	9.5	5.0	18.0	5.5
Merged-chr15-53104192-4	chr15	53103689	53104689	+	989.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 3 of 10)	intron (NM_010162, intron 3 of 10)	241994.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33917642-4	chr16	33917137	33918137	+	989.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 9 of 14)	intron (NM_001145884, intron 9 of 14)	49401.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	3.0	2.0	0.5	1.0	2.0	7.5
Merged-chr11-20232253-4	chr11	20231698	20232698	+	989.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172260, intron 5 of 6)	intron (NM_172260, intron 5 of 6)	17226.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83598205-4	chr6	83597695	83598695	+	989.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25691.0	NM_001362080	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3516908-4	chr5	3516379	3517379	+	989.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 6 of 7)	intron (NM_009873, intron 6 of 7)	-26954.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55561421-2	chr14	55560921	55561921	+	989.6666869999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_133734, exon 2 of 15)	exon (NM_133734, exon 2 of 15)	498.0	NM_001199009	28199.0	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-7399162-3	chr17	7398667	7399667	+	989.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS_Mus|LTR|ERV1	-13862.0	NM_001142539	667055.0	Mm.327371	NM_001142539	ENSMUSG00000056133	Gm9992	-	predicted gene 9992	protein-coding	0.0	0.0	3.0	0.0	0.0	0.0
Merged-chr2-165917755-3	chr2	165917275	165918275	+	989.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32937.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106778793-3	chr11	106778252	106779252	+	989.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_148430, exon 1 of 8)	non-coding (NR_148430, exon 1 of 8)	714.0	NM_001353435	50776.0	Mm.859	NM_015810	ENSMUSG00000020718	Polg2	mtPolB|p55|polG-beta	polymerase (DNA directed), gamma 2, accessory subunit	protein-coding	14.5	36.0	10.5	16.5	39.5	26.0
Merged-chr1-134791213-4	chr1	134790704	134791704	+	989.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081307, intron 18 of 23)	intron (NM_001081307, intron 18 of 23)	12517.0	NR_015606	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102902092-4	chr2	102901592	102902592	+	989.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177785)	promoter-TSS (NM_001177785)	-427.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164878720-4	chr2	164878253	164879253	+	989.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146129)	promoter-TSS (NM_146129)	-615.0	NM_146129	228866.0	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	12.0	24.0	18.0	4.0	16.5	4.0
Merged-chr13-9261933-4	chr13	9261433	9262433	+	989.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14592.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139774552-2	chr5	139774052	139775052	+	989.625	f1_balb.idr|f1_c57bl6.idr	exon (NM_026748, exon 2 of 47)	exon (NM_026748, exon 2 of 47)	1126.0	NM_026748	68510.0	Mm.292942	NM_026748	ENSMUSG00000029547	Ints1	1110015K06Rik	integrator complex subunit 1	protein-coding	0.0	0.0	2.5	0.0	1.5	5.0
Merged-chr5-113636034-4	chr5	113635533	113636533	+	989.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	7570.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	23.0	106.0	57.0	20.5	61.0	66.0
Merged-chr1-54828038-4	chr1	54827562	54828562	+	989.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 2 of 27)	intron (NM_001081433, intron 2 of 27)	98325.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	1.0	0.0	2.0	1.0	0.0	1.5
Merged-chr12-85601112-4	chr12	85600608	85601608	+	989.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 1 of 3)	intron (NM_001205053, intron 1 of 3)	1090.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-68362139-4	chr15	68361643	68362643	+	989.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20854.0	NR_029718	387228.0		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	25.5	77.0	37.0	16.5	56.5	35.0
Merged-chr2-31084642-4	chr2	31084142	31085142	+	989.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 4 of 15)	intron (NM_001355105, intron 4 of 15)	11858.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-4111929-3	chr10	4111445	4112445	+	989.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 26 of 27)	intron (NM_001170785, intron 26 of 27)	101175.0	NR_152620	102632515.0	Mm.416995	NR_152620	ENSMUSG00000111266	Gm30570	-	predicted gene, 30570	ncRNA	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr1-63113716-7	chr1	63113244	63114244	+	989.595215	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045915)	promoter-TSS (NR_045915)	523.0	NM_001081436	227195.0	Mm.74718	NM_001081436	ENSMUSG00000040865	Ino80d	7330405I11|A430093A21Rik|BC010584	INO80 complex subunit D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-40978854-4	chr13	40978337	40979337	+	989.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155347, intron 1 of 4)	MER2|DNA|TcMar-Tigger	-22173.0	NM_026550	68083.0	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125278561-4	chr5	125278044	125279044	+	989.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205082, intron 11 of 11)	intron (NM_001205082, intron 11 of 11)	62550.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58168439-4	chr11	58167908	58168908	+	989.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172558, exon 1 of 28)	exon (NM_172558, exon 1 of 28)	131.0	NM_172558	216766.0	Mm.275349	NM_172558	ENSMUSG00000037275	Gemin5	AA407055|AA407208|AI451603|BB194447|C330013N08	gem nuclear organelle associated protein 5	protein-coding	14.5	35.5	22.0	28.5	29.5	27.0
Merged-chr8-73354431-4	chr8	73353950	73354950	+	989.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010687)	promoter-TSS (NM_010687)	-910.0	NM_010687	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31494627-4	chr14	31494144	31495144	+	989.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028932)	promoter-TSS (NM_028932)	114.0	NM_001359850	67011.0	Mm.291731	NM_025907	ENSMUSG00000021891	Mettl6	1600013P15Rik|AI467521|AU020711	methyltransferase like 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146750022-4	chr5	146749540	146750540	+	989.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 6 of 8)	intron (NM_011669, intron 6 of 8)	44916.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-33464091-3	chr18	33463596	33464596	+	989.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045415)	promoter-TSS (NR_045415)	-67.0	NM_001109988	27528.0	Mm.407415	NM_053078	ENSMUSG00000042834	Nrep	AI325076|D0H4S114|Harp|P311|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100343831-4	chr11	100343352	100344352	+	989.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	9445.0	NM_010257	14459.0	Mm.4767	NM_010257	ENSMUSG00000017165	Gast	GAS	gastrin	protein-coding	2.0	17.5	12.5	5.0	27.0	13.0
Merged-chr9-94818792-4	chr9	94818293	94819293	+	989.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 5 of 15)	intron (NM_177909, intron 5 of 15)	66964.0	NR_106116	102465763.0		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38259446-4	chr15	38258947	38259947	+	989.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	40244.0	NM_008757	18285.0	Mm.252830	NM_008757	ENSMUSG00000061923	Odf1	-	outer dense fiber of sperm tails 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-80665922-4	chr1	80665414	80666414	+	989.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285927)	promoter-TSS (NM_001285927)	-562.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84998037-4	chr8	84997548	84998548	+	989.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001167991, exon 15 of 22)	exon (NM_001167991, exon 15 of 22)	7453.0	NM_001167991	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	13.0	24.5	16.0	12.0	7.0	6.5
Merged-chr1-172521042-4	chr1	172520571	172521571	+	989.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027972)	promoter-TSS (NM_027972)	-59.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	2.5	0.0	0.0	0.0	0.0	2.0
Merged-chr3-68708395-4	chr3	68707870	68708870	+	989.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16946.0	NM_008351	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134135113-4	chr6	134134616	134135616	+	989.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	99416.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.0	10.0	3.0	2.0	1.0	1.0
Merged-chr10-122985677-4	chr10	122985073	122986073	+	989.535706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_029527)	TTS (NR_029527)	151.0	NR_029527	387251.0		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	0.0	2.5	0.0	0.0	1.0	1.0
Merged-chr18-4336440-7	chr18	4335957	4336957	+	989.5064699999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 5 of 7)	intron (NM_007746, intron 5 of 7)	16496.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44879944-2	chr9	44879444	44880444	+	989.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081049, intron 1 of 35)	intron (NM_001081049, intron 1 of 35)	1330.0	NM_001357549	214162.0	Mm.2389	NM_001081049	ENSMUSG00000002028	Kmt2a	6430520K01|ALL-1|All1|Cxxc7|HRX|HTRX1|Mll|Mll1|mKIAA4050	lysine (K)-specific methyltransferase 2A	protein-coding	0.0	2.0	3.0	0.5	7.5	0.0
Merged-chr11-101179519-2	chr11	101179019	101180019	+	989.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_016782, exon 7 of 24)	exon (NM_016782, exon 7 of 24)	3402.0	NM_016782	53321.0	Mm.474527	NM_016782	ENSMUSG00000017167	Cntnap1	AI841080|Caspr|NCP1|Nrxn4|p190|shm	contactin associated protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59036661-2	chr9	59036161	59037161	+	989.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042752)	promoter-TSS (NM_001042752)	-220.0	NM_008684	18007.0	Mm.42249	NM_008684	ENSMUSG00000032340	Neo1	2610028H22Rik|AI327052|D930014N22Rik|Igdcc2	neogenin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-104469723-2	chr14	104469223	104470223	+	989.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1724.0	NM_011143	18996.0	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-97082229-4	chr5	97081751	97082751	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_198422, exon 7 of 7)	3' UTR (NM_198422, exon 7 of 7)	29345.0	NM_001359910	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-125461622-2	chr1	125461122	125462122	+	989.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTCC)n|Simple_repeat|Simple_repeat	-25895.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.0	0.0	3.0	0.0	0.0	3.0
Merged-chr11-79023591-4	chr11	79023090	79024090	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045873)	promoter-TSS (NR_045873)	-7.0	NR_045873	790910.0	Mm.440410	NR_045873		Gm11201	-	predicted gene 11201	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46370821-4	chr18	46370334	46371334	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58906.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53707311-4	chr11	53706808	53707808	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009012)	promoter-TSS (NM_009012)	11.0	NM_009012	19360.0	Mm.4888	NM_009012	ENSMUSG00000020380	Rad50	Mrell|Rad50l	RAD50 double strand break repair protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-45367307-4	chr8	45366796	45367796	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153535, intron 1 of 13)	intron (NM_153535, intron 1 of 13)	14995.0	NM_153535	212326.0	Mm.51259	NM_153535	ENSMUSG00000070044	Fam149a	AW213256|mKIAA4166	family with sequence similarity 149, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161500527-4	chr1	161500021	161501021	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183391, intron 2 of 2)	intron (NM_183391, intron 2 of 2)	5864.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	8.5	31.0	14.0	21.5	18.5	14.0
Merged-chr6-134873279-2	chr6	134872777	134873777	+	989.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167694, intron 3 of 3)	B2_Mm2|SINE|B2	14508.0	NR_074084	14760.0	Mm.4787	NM_008157	ENSMUSG00000032641	Gpr19	-	G protein-coupled receptor 19	protein-coding	0.0	0.0	6.0	0.0	2.0	0.0
Merged-chr3-130729565-4	chr3	130729071	130730071	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005859, intron 1 of 4)	intron (NM_001005859, intron 1 of 4)	758.0	NM_001199350	619547.0	Mm.391636	NM_001199350		Rpl34-ps1	EG619547|Gm10239	ribosomal protein L34, pseudogene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136246596-4	chr5	136246081	136247081	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1641.0	NM_018825	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	7.5	45.5	7.0	1.0	7.5	8.0
Merged-chr8-128083985-2	chr8	128083485	128084485	+	989.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	194240.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113617433-4	chr13	113616924	113617924	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_130796, exon 1 of 2)	exon (NM_130796, exon 1 of 2)	1140.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120507668-2	chr5	120507168	120508168	+	989.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3524.0	NM_001177595	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr5-118560854-4	chr5	118560382	118561382	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 1 of 30)	CpG-11438	163.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112623987-4	chr12	112623517	112624517	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 1 of 12)	intron (NM_007421, intron 1 of 12)	3970.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67334497-3	chr17	67333995	67334995	+	989.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	19964.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119740746-4	chr2	119740207	119741207	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1630.0	NM_146125	228550.0	Mm.65337	NM_146125	ENSMUSG00000027296	Itpka	-	inositol 1,4,5-trisphosphate 3-kinase A	protein-coding	10.0	9.0	12.0	13.0	15.5	11.0
Merged-chr5-146808727-5	chr5	146808095	146809095	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13639.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	61.5	129.5	144.0	61.0	122.5	127.0
Merged-chr15-78895278-2	chr15	78894778	78895778	+	989.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145929)	TTS (NM_145929)	3438.0	NR_105920	102466210.0		NR_105920	ENSMUSG00000099267	Mir6955	Gm27769|mmu-mir-6955	microRNA 6955	ncRNA	16.0	30.0	3.5	9.5	7.0	2.5
Merged-chr2-155050404-2	chr2	155049904	155050904	+	989.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015770, intron 3 of 3)	intron (NM_015770, intron 3 of 3)	24093.0	NM_016661	269378.0	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	9.5	3.0	7.0	6.5	16.0	8.0
Merged-chr11-6475228-7	chr11	6474825	6475825	+	989.464294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011221, exon 1 of 1)	exon (NM_011221, exon 1 of 1)	751.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	42.0	150.0	84.0	42.5	119.5	100.5
Merged-chr18-50126296-4	chr18	50125776	50126776	+	989.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1925.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95574564-4	chr9	95574076	95575076	+	989.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14759.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124613635-4	chr2	124613159	124614159	+	989.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	3363.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115767542-4	chr6	115767044	115768044	+	989.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-5078.0	NM_001168256	94346.0	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46511007-4	chr19	46510509	46511509	+	989.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	9361.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	30.5	126.0	101.5	53.5	134.0	95.0
Merged-chr12-102302425-4	chr12	102301888	102302888	+	989.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	18747.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0.0	2.5	0.5	0.0	4.0	3.5
Merged-chr6-115480473-4	chr6	115479978	115480978	+	989.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 7 of 7)	intron (NM_001308354, intron 7 of 7)	58412.0	NM_011146	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-62760254-4	chr1	62759755	62760755	+	989.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 7 of 16)	intron (NM_001077404, intron 7 of 16)	34477.0	NR_040601	74992.0	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27643234-3	chr3	27642724	27643724	+	989.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173182, intron 1 of 25)	intron (NM_173182, intron 1 of 25)	-58229.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71834505-3	chr17	71834000	71835000	+	989.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271483, intron 13 of 16)	intron (NM_001271483, intron 13 of 16)	52553.0	NM_030179	78785.0	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	5.5	35.0	23.0	39.0	112.0	114.5
Merged-chr5-20749655-4	chr5	20749147	20750147	+	989.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	132477.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115597325-4	chr8	115596818	115597818	+	989.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109576.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112439658-3	chr13	112439163	112440163	+	989.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24407.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	19.0	11.0	4.0	4.5	3.0	2.0
Merged-chr5-77174962-4	chr5	77174456	77175456	+	989.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36249.0	NM_001289767	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr4-46575040-4	chr4	46574538	46575538	+	989.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 1 of 11)	intron (NM_001164804, intron 1 of 11)	-8598.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	8.0	46.5	26.0	18.5	17.0	18.0
Merged-chr13-51107046-4	chr13	51106549	51107549	+	989.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283029, intron 1 of 5)	MTE2b|LTR|ERVL-MaLR	5502.0	NM_001283029	20729.0	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38484873-5	chr2	38484440	38485440	+	989.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26757.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-103214754-4	chr4	103214227	103215227	+	989.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001356276, exon 1 of 12)	exon (NM_001356276, exon 1 of 12)	449.0	NM_001356276	242585.0	Mm.281800	NM_177732	ENSMUSG00000028521	Slc35d1	AI834976|C330011J09|UGTREL7|mKIAA0260	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35554434-3	chr12	35553952	35554952	+	989.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19463.0	NM_001314027	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	9.0	28.5	27.0	5.0	24.0	19.5
Merged-chr15-30520249-4	chr15	30519748	30520748	+	989.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	347655.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85476182-10	chr12	85475623	85476623	+	989.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010234, exon 4 of 4)	exon (NM_010234, exon 4 of 4)	2233.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23954494-2	chr11	23953994	23954994	+	989.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59224.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21698353-2	chr16	21697853	21698853	+	989.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	-3688.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-98109243-4	chr4	98108721	98109721	+	989.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 10 of 10)	intron (NM_010905, intron 10 of 10)	274044.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-13576042-4	chr2	13575552	13576552	+	989.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011701, intron 2 of 8)	intron (NM_011701, intron 2 of 8)	1741.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67173287-4	chr15	67172804	67173804	+	989.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 1 of 8)	MER44A|DNA|TcMar-Tigger	3578.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	33.5	64.5	67.0	47.5	105.0	56.0
Merged-chr4-149737462-3	chr4	149736972	149737972	+	989.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284270, intron 1 of 10)	intron (NM_001284270, intron 1 of 10)	298.0	NM_001284273	230917.0	Mm.266704	NM_177672	ENSMUSG00000044700	Tmem201	AV028368|D4Ertd429e|Net5|Samp1	transmembrane protein 201	protein-coding	9.5	23.5	23.0	7.0	28.0	8.0
Merged-chr6-22003083-4	chr6	22002594	22003594	+	989.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081351, intron 1 of 21)	intron (NM_001081351, intron 1 of 21)	17184.0	NM_001081351	214642.0	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85588695-1	chr1	85588195	85589195	+	989.3333130000001	f1_balb.idr	intron (NM_030194, intron 5 of 11)	intron (NM_030194, intron 5 of 11)	10115.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-137757819-4	chr6	137757323	137758323	+	989.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172733, intron 1 of 8)	MTC|LTR|ERVL-MaLR	3246.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-55624336-3	chr18	55623860	55624860	+	989.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-631769.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100119581-4	chr15	100119058	100120058	+	989.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 2 of 37)	intron (NM_001159361, intron 2 of 37)	-34838.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	5.5	0.5	4.0	5.5	0.5	2.5
Merged-chr8-40610446-4	chr8	40609922	40610922	+	989.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040699, intron 1 of 13)	B3A|SINE|B2	24370.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	9.5	54.5	32.0	2.0	9.5	0.5
Merged-chr6-124712889-2	chr6	124712389	124713389	+	989.3333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013536)	promoter-TSS (NM_013536)	600.0	NM_007531	12034.0	Mm.36241	NM_007531	ENSMUSG00000004264	Phb2	AU044498|BAP|Bap37|Bcap37|REA	prohibitin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-54562346-4	chr8	54561846	54562846	+	989.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029569, intron 1 of 6)	intron (NM_029569, intron 1 of 6)	12015.0	NM_029569	76294.0	Mm.33171	NM_029569	ENSMUSG00000031519	Asb5	1110018D09Rik	ankyrin repeat and SOCs box-containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-89411516-4	chr7	89411027	89412027	+	989.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7161.0	NM_008055	14366.0	Mm.86755	NM_008055	ENSMUSG00000049791	Fzd4	Fz4	frizzled class receptor 4	protein-coding	0.0	0.5	1.0	5.0	14.5	1.0
Merged-chr1-105997484-4	chr1	105996987	105997987	+	989.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122675, intron 1 of 12)	intron (NM_001122675, intron 1 of 12)	7081.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105254284-4	chr8	105253778	105254778	+	989.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001271915, exon 1 of 1)	exon (NM_001271915, exon 1 of 1)	875.0	NM_001271915	97440.0	Mm.489600	NM_178879	ENSMUSG00000069920	B3gnt9	3-Gn-T9|B3gnt9-ps|BGnT-9|C76565|C76566|beta-1|beta3Gn-T9	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55019553-4	chr12	55019070	55020070	+	989.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33234.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	83.0	168.0	107.5	40.0	80.0	67.5
Merged-chr18-49945640-4	chr18	49945130	49946130	+	989.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081371, intron 37 of 42)	intron (NM_001081371, intron 37 of 42)	-33797.0	NM_001177760	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	17.0	14.0	8.5	5.0	13.0	6.0
Merged-chr15-6081484-4	chr15	6080997	6081997	+	989.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR82B|LTR|ERVL	-36793.0	NR_155429	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170133520-4	chr2	170132968	170133968	+	989.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159683, intron 1 of 6)	CpG	-2248.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34827129-4	chr11	34826630	34827630	+	989.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027411, intron 2 of 11)	Tigger7|DNA|TcMar-Tigger	6511.0	NM_027411	70385.0	Mm.194368	NM_027411	ENSMUSG00000069910	Spdl1	1700018I02Rik|2600001J17Rik|2810049B11Rik|AA409762|Ccdc99	spindle apparatus coiled-coil protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-4334468-4	chr10	4333962	4334962	+	989.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031185, intron 2 of 3)	intron (NM_031185, intron 2 of 3)	53013.0	NM_001359811	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118608718-5	chr9	118608106	118609106	+	989.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	1897.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135947133-4	chr4	135946658	135947658	+	989.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357529)	promoter-TSS (NM_001357529)	-248.0	NM_001357529	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-57652593-8	chr8	57652040	57653040	+	989.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040698, intron 1 of 3)	CpG	515.0	NM_001167981	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	3.0	2.5	0.0	0.5	4.0	0.0
Merged-chr8-70867815-2	chr8	70867338	70868338	+	989.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026964)	TTS (NM_026964)	5652.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	0.0	0.0	4.5	3.0	12.0	1.0
Merged-chr15-59819330-4	chr15	59818793	59819793	+	989.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24334.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	39.5	56.0	38.0	20.0	37.0	31.5
Merged-chr13-52638265-2	chr13	52637765	52638765	+	989.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 10 of 13)	intron (NM_011518, intron 10 of 13)	41383.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69223129-4	chr3	69222606	69223606	+	989.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027843, exon 1 of 1)	3' UTR (NM_027843, exon 1 of 1)	687.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	35.0	66.0	48.0	20.0	61.5	29.0
Merged-chr1-193174530-2	chr1	193174030	193175030	+	989.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153137)	TTS (NM_153137)	953.0	NM_181048	319266.0	Mm.482460	NM_181048	ENSMUSG00000079144	A130010J15Rik	-	RIKEN cDNA A130010J15 gene	protein-coding	2.5	8.0	0.5	1.0	1.0	3.5
Merged-chr17-40716462-3	chr17	40715982	40716982	+	989.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-10638.0	NM_001038500	619517.0	Mm.391018	NM_001038500	ENSMUSG00000073396	Esp1	EG619517|Gm6084	exocrine gland secreted peptide 1	protein-coding	3.5	33.5	22.5	19.0	13.5	9.5
Merged-chr15-59430560-3	chr15	59430047	59431047	+	989.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 3 of 4)	intron (NM_001164604, intron 3 of 4)	56349.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	0.0	2.0	0.5	6.0	5.0	4.5
Merged-chr4-133847968-3	chr4	133847461	133848461	+	989.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001285506, exon 21 of 21)	3' UTR (NM_001285506, exon 21 of 21)	26770.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	53.0	106.5	107.5	1.0	16.5	9.5
Merged-chr11-115185132-3	chr11	115184619	115185619	+	989.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025400, intron 2 of 6)	intron (NM_025400, intron 2 of 6)	2197.0	NM_025400	66176.0	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	10.5	48.5	43.0	3.5	11.0	13.5
Merged-chr10-42760431-4	chr10	42759921	42760921	+	989.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1075.0	NM_001359283	140740.0	Mm.214344	NM_153055	ENSMUSG00000019802	Sec63	5730478J10Rik|AI649014|AW319215	SEC63-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73972480-4	chr17	73971952	73972952	+	989.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22256.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-33930763-5	chr8	33930318	33931318	+	989.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286168)	promoter-TSS (NM_001286168)	-955.0	NM_001042675	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	21.0	47.0	40.5	17.0	42.5	21.0
Merged-chr15-99001740-4	chr15	99001211	99002211	+	989.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15746.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-70420695-4	chr4	70420210	70421210	+	989.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10275.0	NM_145990	214444.0	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99563615-4	chr12	99563117	99564117	+	989.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_136760)	promoter-TSS (NR_136760)	-224.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88772622-4	chr3	88772125	88773125	+	989.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018804)	promoter-TSS (NM_018804)	-26.0	NM_018804	229521.0	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	3.0	9.0	5.5	13.0	20.0	13.0
Merged-chr15-98928742-4	chr15	98928254	98929254	+	989.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GCTTG)n|Simple_repeat|Simple_repeat	5636.0	NM_011654	22143.0	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124627910-4	chr2	124627412	124628412	+	989.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	B4A|SINE|B4	17616.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117868094-2	chr4	117867594	117868594	+	989.1666869999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_008135, exon 14 of 14)	exon (NM_008135, exon 14 of 14)	4376.0	NM_001034876	381546.0	Mm.440118	NM_001034876	ENSMUSG00000078588	Ccdc24	Gm1028	coiled-coil domain containing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85510946-4	chr8	85510432	85511432	+	989.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173866, intron 5 of 11)	intron (NM_173866, intron 5 of 11)	18315.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	14.0	42.0	22.5	7.0	17.0	15.5
Merged-chr18-82821666-4	chr18	82821159	82822159	+	989.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID|SINE|ID	-34238.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	6.0	5.0	10.5	6.0	5.5	12.5
Merged-chr13-39923323-4	chr13	39922824	39923824	+	989.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	364687.0	NM_172143	218165.0	Mm.364096	NM_172143	ENSMUSG00000047094	Ofcc1	opo	orofacial cleft 1 candidate 1	protein-coding	0.0	0.0	5.5	1.0	0.0	0.0
Merged-chr13-45326159-4	chr13	45325659	45326659	+	989.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63583.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82613682-2	chr11	82613182	82614182	+	989.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G1|LTR|ERVL-MaLR	-19671.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-6154282-4	chr7	6153771	6154771	+	989.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013012, intron 1 of 2)	intron (NM_001013012, intron 1 of 2)	1700.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16326081-4	chr19	16325597	16326597	+	989.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 3 of 6)	intron (NM_008139, intron 3 of 6)	-11093.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79652469-4	chr11	79651965	79652965	+	989.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175543, intron 3 of 14)	intron (NM_175543, intron 3 of 14)	22621.0	NR_045898	72218.0	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-31559675-3	chr9	31559182	31560182	+	989.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95444.0	NM_144936	235135.0	Mm.390134	NM_144936	ENSMUSG00000041737	Tmem45b	BC018222	transmembrane protein 45b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40727773-3	chr9	40727266	40728266	+	989.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	MTC|LTR|ERVL-MaLR	41802.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	6.5	9.5	4.0	16.5	23.5	8.0
Merged-chr8-59234646-3	chr8	59234147	59235147	+	989.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	322892.0	NM_173411	234290.0	Mm.39244	NM_173411	ENSMUSG00000049946	BC030500	-	cDNA sequence BC030500	protein-coding	9.5	0.5	5.5	4.0	10.0	5.0
Merged-chr10-79925476-4	chr10	79924984	79925984	+	989.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-1559.0	NM_001288626	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	2.0	2.0	0.0	2.0	2.0	0.0
Merged-chr17-50393478-4	chr17	50392976	50393976	+	989.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99856.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	22.0	78.5	26.0	19.5	33.5	25.0
Merged-chr17-5605582-4	chr17	5605094	5606094	+	989.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	112994.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128268118-4	chr8	128267626	128268626	+	989.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10099.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122559235-4	chr8	122558741	122559741	+	989.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7912.0	NM_001357349	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	25.5	56.5	40.0	28.0	56.5	48.5
Merged-chr11-6508673-4	chr11	6508183	6509183	+	989.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178440, intron 18 of 21)	MTD|LTR|ERVL-MaLR	12275.0	NM_178440	246177.0	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	6.5	0.0	3.0	2.5	1.0	5.0
Merged-chr5-64960097-4	chr5	64959597	64960597	+	989.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359180)	promoter-TSS (NM_001359180)	-1.0	NM_011604	21899.0	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	20.5	67.0	39.5	13.5	34.0	29.0
Merged-chr18-69085139-3	chr18	69084647	69085647	+	989.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62874.0	NR_105780	102465187.0		NR_105780	ENSMUSG00000098366	Mir145b	Gm27644|mmu-mir-145b	microRNA 145b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138227525-4	chr5	138227023	138228023	+	989.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013773, intron 1 of 5)	URR1B|DNA|hAT-Charlie	1619.0	NM_001013773	381680.0	Mm.156846	NM_001013773	ENSMUSG00000047592	Nxpe5	-	neurexophilin and PC-esterase domain family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49876315-4	chr16	49875807	49876807	+	989.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 3 of 9)	intron (NM_010581, intron 3 of 9)	20653.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152019301-4	chr1	152018798	152019798	+	989.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 1 of 5)	intron (NM_197990, intron 1 of 5)	71022.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-40927791-4	chr8	40927273	40928273	+	989.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026840, intron 1 of 5)	intron (NM_026840, intron 1 of 5)	1540.0	NM_026840	68797.0	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	7.0	5.5	6.0	1.0	0.0	1.0
Merged-chr10-51491381-12	chr10	51490945	51491945	+	989.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013532, exon 3 of 9)	exon (NM_013532, exon 3 of 9)	547.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128759685-2	chr6	128759181	128760181	+	989.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	28960.0	NM_001159904	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	7.0	1.5	3.0	1.0	4.0	2.0
Merged-chr18-24528423-2	chr18	24527923	24528923	+	989.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360807, intron 1 of 7)	(TTTTG)n|Simple_repeat|Simple_repeat	1781.0	NM_144861	225283.0	Mm.28427	NM_144861	ENSMUSG00000040446	Rprd1a	C77387|mKIAA4077	regulation of nuclear pre-mRNA domain containing 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-79669783-3	chr1	79669266	79670266	+	989.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183027, intron 1 of 4)	intron (NM_183027, intron 1 of 4)	2206.0	NM_183027	252903.0	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67631040-3	chr7	67630542	67631542	+	989.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028143, intron 2 of 9)	intron (NR_028143, intron 2 of 9)	14194.0	NM_175124	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr13-19794672-1	chr13	19794172	19795172	+	989.0	f0_balb.idr	intron (NM_181754, intron 2 of 4)	ORR1B1|LTR|ERVL-MaLR	29585.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	4.0	0.0	2.0	10.5	0.0	5.5
Merged-chr2-101779227-4	chr2	101778727	101779727	+	989.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	18480.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	35.0	54.5	39.0	6.5	14.5	36.5
Merged-chr11-26755791-4	chr11	26755308	26756308	+	989.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-29300.0	NR_002890	654472.0	Mm.347777	NR_002890		Gm12070	-	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	2.5	2.5	3.5	4.5	3.5	2.5
Merged-chr7-31059676-2	chr7	31059176	31060176	+	989.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144556)	promoter-TSS (NM_144556)	-259.0	NM_144556	243914.0	Mm.389870	NM_144556	ENSMUSG00000036560	Lgi4	Lgil3|clp	leucine-rich repeat LGI family, member 4	protein-coding	0.0	1.0	1.0	0.0	3.0	1.0
Merged-chr5-147758868-4	chr5	147758402	147759402	+	989.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32914.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120902732-3	chr11	120902277	120903277	+	989.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027745, intron 6 of 18)	intron (NM_027745, intron 6 of 18)	30095.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87746449-4	chr17	87745966	87746966	+	989.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_199251, exon 2 of 2)	exon (NM_199251, exon 2 of 2)	51528.0	NM_199251	210741.0	Mm.312046	NM_199251	ENSMUSG00000050138	Kcnk12	mntk1	potassium channel, subfamily K, member 12	protein-coding	0.0	1.0	0.0	0.0	0.0	1.0
Merged-chr11-86615859-2	chr11	86615359	86616359	+	989.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 7 of 11)	RMER1B|Other|Other	-31701.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84994023-1	chr1	84993523	84994523	+	989.0	f1_balb.idr	Intergenic	Intergenic	-58940.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133183437-1	chr4	133182937	133183937	+	989.0	f1_balb.idr	intron (NM_153423, intron 2 of 8)	intron (NM_153423, intron 2 of 8)	-12218.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	18.5	63.0	31.5	14.0	68.0	44.0
Merged-chr2-27764345-5	chr2	27763848	27764848	+	989.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53765.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79022901-2	chr11	79022401	79023401	+	989.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045873)	promoter-TSS (NR_045873)	-696.0	NR_045873	790910.0	Mm.440410	NR_045873		Gm11201	-	predicted gene 11201	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-56312391-1	chr8	56311891	56312891	+	989.0	f1_balb.idr	intron (NM_008278, intron 4 of 6)	intron (NM_008278, intron 4 of 6)	17839.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	18.5	19.5	19.5	17.5	34.0	20.5
Merged-chr2-25451376-4	chr2	25450859	25451859	+	989.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5484.0	NM_027085	69454.0	Mm.44194	NM_027085	ENSMUSG00000015093	Clic3	2300003G24Rik	chloride intracellular channel 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47703116-2	chr17	47702616	47703616	+	989.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_144939, exon 7 of 7)	exon (NM_144939, exon 7 of 7)	-1120.0	NR_045913	100126242.0	Mm.392746	NR_045912	ENSMUSG00000086930	Frs3os	4930417B13Rik|Gm14873	fibroblast growth factor receptor substrate 3, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-68464258-2	chr5	68463758	68464758	+	989.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25A|LTR|ERVK	432423.0	NM_001018019	433899.0	Mm.332422	NM_001018019	ENSMUSG00000068082	Grxcr1	Tg(Eno2-Gabrb3)0370Brll|pi|tde	glutaredoxin, cysteine rich 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-14863619-1	chr4	14863119	14864119	+	989.0	f0_balb.idr	promoter-TSS (NM_028264)	promoter-TSS (NM_028264)	-600.0	NM_028264	72519.0	Mm.279158	NM_028264	ENSMUSG00000028221	Tmem55a	2610319K07Rik|AI315591|AV001360|Pip4p2	transmembrane protein 55A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133541318-2	chr4	133540834	133541834	+	989.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010948, intron 1 of 7)	intron (NM_010948, intron 1 of 7)	4693.0	NM_010948	18221.0	Mm.69	NM_010948	ENSMUSG00000028851	Nudc	SIG-92|Silg92	nudC nuclear distribution protein	protein-coding	14.0	6.5	0.0	3.5	1.0	2.0
Merged-chr9-32633168-1	chr9	32632668	32633668	+	989.0	f0_balb.idr	Intergenic	Intergenic	-62874.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.0	0.0	0.0	0.0	2.5	0.0
Merged-chr13-41747110-2	chr13	41746610	41747610	+	989.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100378.0	NM_175417	109254.0	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131979246-3	chr1	131978744	131979744	+	989.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177628, intron 4 of 4)	L3b|LINE|CR1	8635.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125473979-1	chr7	125473479	125474479	+	989.0	f1_c57bl6.idr	intron (NM_001360659, intron 2 of 7)	intron (NM_001360659, intron 2 of 7)	17563.0	NM_001360659	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	22.0	82.5	50.0	15.0	22.5	24.5
Merged-chr8-108691291-2	chr8	108690791	108691791	+	989.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23353.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-75893054-3	chr13	75892558	75893558	+	989.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028493, intron 7 of 11)	intron (NM_028493, intron 7 of 11)	50766.0	NM_028493	73296.0	Mm.276200	NM_028493	ENSMUSG00000021589	Rhobtb3	1700040C17Rik|2610033K01Rik|4930503C18Rik|AI317148|AW208826|mKIAA0878	Rho-related BTB domain containing 3	protein-coding	5.5	9.5	2.0	1.5	2.5	2.0
Merged-chr2-23571945-5	chr2	23571414	23572414	+	988.980957	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001165997, exon 1 of 12)	5' UTR (NM_001165997, exon 1 of 12)	190.0	NM_029773	76857.0	Mm.276415	NM_029773	ENSMUSG00000026771	Spopl	4921517N04Rik|AU014935|BB233739|E430033K04Rik	speckle-type POZ protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-79441648-4	chr14	79441145	79442145	+	988.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10190.0	NM_001034882	432879.0	Mm.308666	NM_001034882	ENSMUSG00000075502	Kbtbd6	EG432879|Gm5465|Zbtbd6	kelch repeat and BTB (POZ) domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-123506996-4	chr3	123506598	123507598	+	988.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008939)	TTS (NM_008939)	968.0	NR_028573	100306957.0	Mm.260791	NR_028573	ENSMUSG00000092730	Snora24	ACA24	small nucleolar RNA, H/ACA box 24	snoRNA	22.5	52.5	17.0	21.5	70.5	18.5
Merged-chr11-44545388-4	chr11	44544887	44545887	+	988.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 4 of 5)	intron (NM_001166553, intron 4 of 5)	26010.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	15.0	40.5	27.0	32.5	49.0	18.0
Merged-chr12-54959771-4	chr12	54959276	54960276	+	988.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013815, intron 3 of 26)	L1MB4|LINE|L1	26560.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	7.5	13.5	5.0	0.0	12.5	4.0
Merged-chr9-45417451-4	chr9	45416944	45417944	+	988.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040732, intron 4 of 4)	intron (NR_040732, intron 4 of 4)	11367.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	3.0	0.0	10.0	2.5	3.0	2.0
Merged-chr16-92825398-4	chr16	92824912	92825912	+	988.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	662.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-92457927-3	chr9	92457447	92458447	+	988.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178711, intron 1 of 8)	CpG	569.0	NM_178711	235527.0	Mm.55289	NM_178711	ENSMUSG00000032377	Plscr4	AV245873	phospholipid scramblase 4	protein-coding	1.0	5.5	10.0	0.0	6.0	9.5
Merged-chr1-55029593-4	chr1	55029084	55030084	+	988.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2106.0	NM_031179	81898.0	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	67.5	210.0	133.0	94.0	259.0	171.0
Merged-chr14-8214849-4	chr14	8214341	8215341	+	988.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001305936, exon 1 of 3)	5' UTR (NM_001305936, exon 1 of 3)	339.0	NM_001305936	71393.0	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-13561403-4	chr2	13560895	13561895	+	988.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12916.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65740507-4	chr17	65740012	65741012	+	988.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	32240.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	23.0	29.0	12.0	19.5	22.5	12.0
Merged-chr17-31071073-4	chr17	31070587	31071587	+	988.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	13393.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4332901-4	chr19	4332398	4333398	+	988.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001984, intron 12 of 20)	intron (NM_001001984, intron 12 of 20)	-26676.0	NM_001290818	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-86881411-4	chr8	86880903	86881903	+	988.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	3855.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	4.5	15.0	11.5	7.5	14.0	15.5
Merged-chr15-6278740-4	chr15	6278250	6279250	+	988.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21039.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64376681-4	chr5	64376172	64377172	+	988.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5|LINE|L1	91270.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	12.5	21.0	30.5	9.0	21.5	20.0
Merged-chr1-171502831-9	chr1	171502270	171503270	+	988.9021	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019484)	promoter-TSS (NM_019484)	-708.0	NM_019484	56009.0	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	151.0	311.0	228.0	84.5	161.0	111.5
Merged-chr13-60660843-4	chr13	60660321	60661321	+	988.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	58610.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	48.5	63.5	77.5	54.0	79.5	97.5
Merged-chr17-43052624-3	chr17	43052123	43053123	+	988.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 3 of 5)	intron (NM_178589, intron 3 of 5)	36068.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	2.0	0.0	0.5	2.0	0.0	1.0
Merged-chr5-90900935-4	chr5	90900440	90901440	+	988.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2959.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	1.5	6.5	7.0	7.0	2.5	2.0
Merged-chr11-102434603-4	chr11	102434103	102435103	+	988.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008175, intron 7 of 12)	intron (NM_008175, intron 7 of 12)	4281.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	4.0	8.5	3.0	1.0	6.5	2.5
Merged-chr12-119377062-4	chr12	119376513	119377513	+	988.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66397.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59225282-4	chr10	59224747	59225747	+	988.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172939, exon 1 of 1)	3' UTR (NM_172939, exon 1 of 1)	3325.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91853717-4	chr16	91853170	91854170	+	988.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 21 of 28)	intron (NM_001110275, intron 21 of 28)	77960.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-100734253-4	chr9	100733772	100734772	+	988.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009282, intron 3 of 33)	intron (NM_009282, intron 3 of 33)	90824.0	NM_001357265	20842.0	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	13.5	26.5	22.5	8.0	31.0	12.0
Merged-chr19-46523213-4	chr19	46522679	46523679	+	988.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	21531.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	27.5	79.5	39.0	28.5	81.5	41.0
Merged-chr4-95212964-6	chr4	95212456	95213456	+	988.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-160734.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145246365-3	chr4	145245829	145246829	+	988.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	541.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132339593-4	chr7	132339099	132340099	+	988.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22371.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-14362172-5	chr16	14361659	14362659	+	988.840027	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008576, intron 1 of 30)	intron (NM_008576, intron 1 of 30)	601.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46400874-2	chr8	46400374	46401374	+	988.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-70163.0	NM_007981	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-119386456-4	chr12	119385957	119386957	+	988.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56953.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29890404-4	chr2	29889885	29890885	+	988.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013615, intron 1 of 16)	CpG	322.0	NM_013615	18286.0	Mm.330116	NM_013615	ENSMUSG00000026790	Odf2	AI848335|MMTEST29	outer dense fiber of sperm tails 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113595663-2	chr13	113595163	113596163	+	988.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	22901.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-15921952-4	chr7	15921414	15922414	+	988.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009156, intron 1 of 5)	intron (NM_009156, intron 1 of 5)	457.0	NM_009156	20364.0	Mm.42829	NM_009156	ENSMUSG00000041571	Selenow	Sepw1|selW	selenoprotein W	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-149247749-4	chr5	149247245	149248245	+	988.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17259.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-96909449-4	chr5	96908964	96909964	+	988.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-11808.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-14913502-4	chr3	14912999	14913999	+	988.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27211.0	NM_009801	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35493725-4	chr2	35493361	35494361	+	988.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32412.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-137582405-4	chr6	137581910	137582910	+	988.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271588, intron 1 of 20)	intron (NM_001271588, intron 1 of 20)	-11401.0	NM_001271587	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69664811-4	chr11	69664353	69665353	+	988.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001291058, exon 5 of 6)	exon (NM_001291058, exon 5 of 6)	1317.0	NM_001291058	12514.0	Mm.15819	NM_009853	ENSMUSG00000018774	Cd68	Lamp4|Scard1|gp110	CD68 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33940516-6	chr17	33940052	33941052	+	988.8095089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020603)	promoter-TSS (NM_020603)	-171.0	NM_020603	57315.0	Mm.2437	NM_020603	ENSMUSG00000024312	Wdr46	2310007I04Rik|Bing4|C78447|C78559	WD repeat domain 46	protein-coding	53.0	199.0	98.0	58.0	167.5	107.0
Merged-chr6-126853236-4	chr6	126852728	126853728	+	988.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009650, exon 1 of 6)	5' UTR (NM_009650, exon 1 of 6)	130.0	NM_009650	11642.0	Mm.87748	NM_009650	ENSMUSG00000030344	Akap3	Prka3	A kinase (PRKA) anchor protein 3	protein-coding	0.0	0.0	3.0	3.0	1.0	0.0
Merged-chr3-152340197-4	chr3	152339698	152340698	+	988.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162375, intron 1 of 13)	CpG	209.0	NM_174868	215708.0	Mm.135018	NM_174868	ENSMUSG00000054942	Miga1	A930038D06|AI852168|C030011O14Rik|Fam73a|Mita1	mitoguardin 1	protein-coding	14.0	16.5	19.5	6.5	12.5	11.0
Merged-chr6-31412698-4	chr6	31412190	31413190	+	988.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013791, intron 1 of 17)	B3|SINE|B2	13862.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91726435-4	chr16	91726002	91727002	+	988.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026994, intron 1 of 11)	intron (NM_026994, intron 1 of 11)	2300.0	NM_026994	66609.0	Mm.109823	NM_026994	ENSMUSG00000058240	Cryzl1	2210407J23Rik|2410006O11Rik|QOH-1	crystallin, zeta (quinone reductase)-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-37043361-4	chr11	37042873	37043873	+	988.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99132.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-37682786-4	chr16	37682282	37683282	+	988.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28414.0	NM_026610	68194.0	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54058941-4	chr6	54058460	54059460	+	988.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	19028.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33916179-2	chr16	33915679	33916679	+	988.785706	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 9 of 14)	intron (NM_001145884, intron 9 of 14)	50859.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114897510-3	chr11	114896998	114897998	+	988.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170758, intron 3 of 6)	RSINE1|SINE|B4	7457.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32672443-3	chr16	32671935	32672935	+	988.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347185)	promoter-TSS (NM_001347185)	-719.0	NM_001347185	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0.0	0.0	1.0	0.0	0.5	0.0
Merged-chr17-74529364-4	chr17	74528852	74529852	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007566, intron 1 of 72)	intron (NM_007566, intron 1 of 72)	1057.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124696018-4	chr6	124695517	124696517	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149320, intron 1 of 11)	intron (NR_149320, intron 1 of 11)	16161.0	NM_013536	14791.0	Mm.6390	NM_013536	ENSMUSG00000004268	Emg1	C2f|Grcc2f	EMG1 N1-specific pseudouridine methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89200023-4	chr3	89199526	89200526	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2899.0	NM_001077411	14466.0	Mm.5031	NM_008094	ENSMUSG00000028048	Gba	GBA1|GC|GCase|GLUC|betaGC	glucosidase, beta, acid	protein-coding	4.0	0.0	0.0	4.0	2.5	0.0
Merged-chr15-80082228-2	chr15	80081728	80082728	+	988.75	f1_balb.idr|f1_c57bl6.idr	TTS (NR_028281)	TTS (NR_028281)	678.0	NR_028281	100302600.0		NR_028281		Snord43	MBII-47	small nucleolar RNA, C/D box 43	snoRNA	24.5	38.0	40.0	15.0	42.5	25.0
Merged-chr7-80343097-4	chr7	80342594	80343594	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026812)	promoter-TSS (NM_026812)	-43.0	NM_026812	68695.0	Mm.21171	NM_026812	ENSMUSG00000030532	Hddc3	1110033O09Rik|C86475|MESH1	HD domain containing 3	protein-coding	0.5	0.0	0.0	2.5	0.0	1.5
Merged-chr16-97961542-4	chr16	97961020	97962020	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175428, intron 1 of 2)	intron (NM_175428, intron 1 of 2)	1102.0	NM_001081685	114565.0	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding	10.0	23.0	26.0	36.5	29.5	22.0
Merged-chr2-167799163-2	chr2	167798663	167799663	+	988.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	107986.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69371409-4	chr12	69370868	69371868	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007481)	promoter-TSS (NM_007481)	-782.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	213.5	502.5	390.0	211.0	614.0	356.0
Merged-chr17-34151179-2	chr17	34150673	34151673	+	988.75	f0_balb.idr|f1_balb.idr	TTS (NM_010388)	TTS (NM_010388)	-2018.0	NM_010387	14999.0	Mm.460938	NM_010387	ENSMUSG00000079547	H2-DMb1	AI385589|H-2Mb1|H2-Mb1	histocompatibility 2, class II, locus Mb1	protein-coding	4.5	7.5	5.0	16.0	20.5	29.0
Merged-chr2-26930603-4	chr2	26930117	26931117	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011512, intron 1 of 5)	intron (NM_011512, intron 1 of 5)	2894.0	NM_011512	20932.0	Mm.300594	NM_011512	ENSMUSG00000014867	Surf4	AL033340|AL033373|Surf-4	surfeit gene 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108204076-4	chr12	108203574	108204574	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009832)	TTS (NM_009832)	24336.0	NM_009832	12454.0	Mm.474441	NM_009832	ENSMUSG00000021258	Ccnk	AW123198|AW413594|CPR4|CycK	cyclin K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94556446-4	chr16	94555944	94556944	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13762.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98734652-4	chr12	98734136	98735136	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011877)	promoter-TSS (NM_011877)	9.0	NM_011877	24000.0	Mm.4420	NM_011877	ENSMUSG00000021009	Ptpn21	PTPD1|PTPRL10	protein tyrosine phosphatase, non-receptor type 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40174459-4	chr4	40173968	40174968	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007386, intron 4 of 20)	intron (NM_007386, intron 4 of 20)	31203.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0.0	5.5	5.0	0.0	8.0	8.0
Merged-chr6-124993539-4	chr6	124993022	124994022	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3198.0	NM_175696	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	0.0	10.5	4.5	2.0	20.0	12.5
Merged-chr1-80757031-4	chr1	80756544	80757544	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	1509.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110854994-4	chr12	110854487	110855487	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028365, intron 1 of 7)	intron (NM_028365, intron 1 of 7)	4708.0	NM_028365	72805.0	Mm.443524	NM_028365	ENSMUSG00000021271	Zfp839	2810455K09Rik	zinc finger protein 839	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89295726-7	chr3	89295249	89296249	+	988.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14798.0	NM_001162425	13636.0	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27680782-4	chr15	27680289	27681289	+	988.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	753.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107904908-4	chr9	107904377	107905377	+	988.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2012.0	NR_109782	19882.0	Mm.3901	NM_009074	ENSMUSG00000032584	Mst1r	CD136|CDw136|Fv-2|Fv2|PTK8|Ron|STK	macrophage stimulating 1 receptor (c-met-related tyrosine kinase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-28540945-2	chr2	28540445	28541445	+	988.7000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145836, intron 2 of 17)	intron (NM_001145836, intron 2 of 17)	7481.0	NM_001145836	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99263704-3	chr7	99263202	99264202	+	988.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_103487, exon 3 of 4)	non-coding (NR_103487, exon 3 of 4)	3516.0	NR_103487	381967.0	Mm.261763	NR_103487	ENSMUSG00000097015	Gm26705	-	predicted gene, 26705	ncRNA	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr5-75981092-3	chr5	75980596	75981596	+	988.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2668.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	0.0	3.5	2.5	0.0	3.5	2.5
Merged-chr13-90932914-1	chr13	90932414	90933414	+	988.6666869999999	f0_balb.idr	Intergenic	Intergenic	9792.0	NM_024175	66475.0	Mm.306302	NM_024175	ENSMUSG00000049517	Rps23	2410044J15Rik	ribosomal protein S23	protein-coding	2.5	7.0	0.5	2.5	6.5	3.5
Merged-chr3-142594749-4	chr3	142594244	142595244	+	988.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010259)	promoter-TSS (NM_010259)	-103.0	NM_010259	14468.0	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9135652-4	chr19	9135150	9136150	+	988.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025610)	promoter-TSS (NM_025610)	-84.0	NM_025610	66514.0	Mm.272847	NM_025610	ENSMUSG00000024654	Asrgl1	2410004D18Rik|ALP|ALP1|AU040643|AW060375	asparaginase like 1	protein-coding	10.0	12.5	10.5	18.0	19.5	18.0
Merged-chr6-35380084-4	chr6	35379580	35380580	+	988.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49234.0	NR_040526	73409.0	Mm.69443	NR_040526	ENSMUSG00000107341	1700065J11Rik	-	RIKEN cDNA 1700065J11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94226206-4	chr11	94225718	94226718	+	988.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14764.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0.0	0.0	4.5	0.0	0.0	1.5
Merged-chr3-89163688-2	chr3	89163188	89164188	+	988.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1107.0	NM_001310016	105943584.0		NM_001310016		Gm45927	Clk2-scamp3|TU52	predicted gene, 45927	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-52396550-3	chr12	52396046	52397046	+	988.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84063.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144720629-3	chr2	144720120	144721120	+	988.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025314, intron 4 of 5)	intron (NM_025314, intron 4 of 5)	-103046.0	NM_025490	66328.0	Mm.45377	NM_025490	ENSMUSG00000027431	Scp2d1	1700010M22Rik	SCP2 sterol-binding domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135734325-4	chr1	135733825	135734825	+	988.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007791, intron 1 of 5)	intron (NM_007791, intron 1 of 5)	5158.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135536558-4	chr1	135536060	135537060	+	988.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173437, intron 2 of 28)	intron (NM_173437, intron 2 of 28)	48795.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30897966-3	chr5	30897477	30898477	+	988.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001048192, intron 12 of 16)	intron (NM_001048192, intron 12 of 16)	8643.0	NM_001294262	231093.0	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94075034-3	chr11	94074534	94075534	+	988.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025430, intron 5 of 25)	MTEb|LTR|ERVL-MaLR	30829.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	13.5	48.5	25.5	6.5	19.5	24.5
Merged-chr15-53373966-4	chr15	53373459	53374459	+	988.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-27776.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88067913-4	chr6	88067422	88068422	+	988.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-16551.0	NM_133933	103963.0	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69838984-2	chr11	69838484	69839484	+	988.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026982, intron 2 of 3)	intron (NM_026982, intron 2 of 3)	459.0	NM_026982	69186.0	Mm.248772	NM_026982	ENSMUSG00000070394	Tmem256	1810027O10Rik|3110009M16Rik	transmembrane protein 256	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134115787-4	chr6	134115292	134116292	+	988.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	80092.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	80.0	147.0	103.5	36.0	56.0	31.5
Merged-chr1-135730481-4	chr1	135729992	135730992	+	988.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007791, intron 1 of 5)	intron (NM_007791, intron 1 of 5)	1325.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6363391-4	chr2	6362885	6363885	+	988.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181399, intron 1 of 13)	intron (NM_181399, intron 1 of 13)	10649.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30591081-4	chr2	30590577	30591577	+	988.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	-3967.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129512332-4	chr2	129511862	129512862	+	988.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177653, intron 1 of 6)	L1_Mus2|LINE|L1	24240.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	70.0	152.5	113.5	49.5	83.5	111.0
Merged-chr9-23597947-4	chr9	23597421	23598421	+	988.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	374845.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-24417848-4	chr19	24417337	24418337	+	988.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008846, intron 3 of 14)	intron (NM_008846, intron 3 of 14)	59637.0	NM_026520	68034.0	Mm.440181	NM_026520	ENSMUSG00000074922	Fam122a	2410124L17Rik|2900009I07Rik|Gm9849	family with sequence similarity 122, member A	protein-coding	30.0	48.5	41.5	17.5	31.5	13.5
Merged-chr3-104968153-4	chr3	104967669	104968669	+	988.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6460.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-56115315-4	chr10	56114777	56115777	+	988.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163833, exon 2 of 2)	exon (NM_001163833, exon 2 of 2)	8360.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-46761384-3	chr14	46760878	46761878	+	988.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360041, intron 1 of 7)	intron (NM_001360041, intron 1 of 7)	837.0	NM_028222	72391.0	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding	4.0	13.5	10.0	4.5	1.0	11.0
Merged-chr2-156411498-3	chr2	156411001	156412001	+	988.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-9408.0	NM_001291122	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	2.0	1.0	1.5	0.0	0.0	0.0
Merged-chr15-39608854-5	chr15	39608310	39609310	+	988.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053271, intron 21 of 26)	Lx2A|LINE|L1	-50701.0	NM_001256384	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80576531-4	chr10	80576036	80577036	+	988.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_078477, intron 1 of 1)	C-rich|Low_complexity|Low_complexity	760.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-80163525-4	chr9	80163014	80164014	+	988.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1520.0	NM_001039546	17920.0	Mm.4040	NM_008662	ENSMUSG00000033577	Myo6	BC029719|Tlc|sv	myosin VI	protein-coding	3.0	2.5	0.0	3.0	3.0	0.0
Merged-chr8-71634503-4	chr8	71634007	71635007	+	988.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 39 of 41)	intron (NM_001029873, intron 39 of 41)	-3401.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	3.5	1.0	0.0	1.5	3.0	4.5
Merged-chr5-31451481-4	chr5	31450980	31451980	+	988.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172993)	promoter-TSS (NM_172993)	-956.0	NM_172993	269639.0	Mm.259127	NM_172993	ENSMUSG00000062761	Zfp512	2500002M11Rik|AI450173|D230008H22|Znf512	zinc finger protein 512	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12010538-4	chr15	12010074	12011074	+	988.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14567.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62111061-4	chr10	62110564	62111564	+	988.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027251)	promoter-TSS (NM_027251)	-14.0	NM_001358252	69894.0	Mm.294126	NM_027251	ENSMUSG00000020083	Fam241b	2010107G23Rik|AA545165	family with sequence similarity 241, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62847895-3	chr9	62847402	62848402	+	988.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033175, intron 5 of 6)	intron (NM_001033175, intron 5 of 6)	9115.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5989241-4	chr19	5988747	5989747	+	988.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007600, exon 22 of 22)	3' UTR (NM_007600, exon 22 of 22)	-3104.0	NM_198650	381203.0	Mm.329638	NM_198650	ENSMUSG00000037451	Slc22a20	Gm963|OAT1-L|mOAT6	solute carrier family 22 (organic anion transporter), member 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128090760-4	chr10	128090255	128091255	+	988.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_016774)	TTS (NM_016774)	-2028.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-55390340-3	chr15	55389836	55390836	+	988.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181277, intron 14 of 47)	intron (NM_181277, intron 14 of 47)	82586.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45591908-4	chr19	45591358	45592358	+	988.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013907, intron 5 of 8)	intron (NM_013907, intron 5 of 8)	31273.0	NM_172639	226162.0	Mm.21978	NM_172639	ENSMUSG00000041035	Dpcd	Ndac	deleted in primary ciliary dyskinesia	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-85194696-4	chr10	85194208	85195208	+	988.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-9654.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25414632-7	chr15	25414125	25415125	+	988.517883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027395)	promoter-TSS (NM_027395)	433.0	NR_027376	432939.0	Mm.146555	NM_001013791		Gm5468	100040583|EG432939	predicted gene 5468	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3166779-4	chr11	3166281	3167281	+	988.5	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 7 of 32)	B3|SINE|B2	26682.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123427141-2	chr4	123426641	123427641	+	988.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 52 of 92)	URR1A|DNA|hAT-Charlie	-15230.0	NM_001167918	442834.0	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39268830-4	chr6	39268310	39269310	+	988.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62037.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27527349-2	chr17	27526849	27527849	+	988.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23816.0	NM_001291045	268934.0	Mm.358940	NM_001013385	ENSMUSG00000063239	Grm4	Gprc1d|mGluR4	glutamate receptor, metabotropic 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5320314-4	chr18	5319810	5320810	+	988.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360447, intron 1 of 4)	L1M4b|LINE|L1	14129.0	NM_178722	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-12499752-4	chr4	12499236	12500236	+	988.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-327721.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102010539-4	chr5	102010037	102011037	+	988.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	MER3|DNA|hAT-Charlie	59384.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	4.0	20.5	13.0	10.5	18.5	19.5
Merged-chr15-76344218-2	chr15	76343718	76344718	+	988.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025567, intron 1 of 6)	intron (NM_025567, intron 1 of 6)	695.0	NM_025567	66445.0	Mm.29196	NM_025567	ENSMUSG00000022551	Cyc1	2610002H19Rik|AA408921|Cyct1	cytochrome c-1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165762094-4	chr1	165761602	165762602	+	988.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11B|LTR|ERVK	-1656.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-5012665-2	chr16	5012165	5013165	+	988.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133185, intron 2 of 10)	intron (NM_133185, intron 2 of 10)	888.0	NM_133185	66049.0	Mm.27792	NM_133185	ENSMUSG00000022540	Rogdi	0610011C19Rik|AU020118|C76152|Lzf	rogdi homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-29772180-2	chr5	29771680	29772680	+	988.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359198, intron 8 of 8)	intron (NM_001359198, intron 8 of 8)	-36244.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45974002-4	chr13	45973526	45974526	+	988.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9035.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119052792-2	chr11	119052292	119053292	+	988.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11879.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-3403308-4	chr9	3402820	3403820	+	988.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027545)	promoter-TSS (NM_027545)	-765.0	NM_027545	244672.0	Mm.245482	NM_027545	ENSMUSG00000025898	Cwf19l2	3230401L03Rik|9030209E10	CWF19-like 2, cell cycle control (S. pombe)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110694645-2	chr12	110694145	110695145	+	988.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010480, exon 4 of 11)	exon (NM_010480, exon 4 of 11)	1750.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19010650-2	chr7	19010150	19011150	+	988.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6585.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-19415211-4	chr2	19414706	19415706	+	988.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30457.0	NM_018809	19213.0	Mm.69647	NM_018809	ENSMUSG00000026735	Ptf1a	PTF1-p48|PTF1p48|bHLHa29	pancreas specific transcription factor, 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70541141-4	chr8	70540653	70541653	+	988.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	1478.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142521507-4	chr3	142521016	142522016	+	988.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153564, exon 11 of 11)	3' UTR (NM_153564, exon 11 of 11)	-8820.0	NM_001083312	229900.0	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	4.5	1.5	5.0	6.0	1.5	5.0
Merged-chr11-85312100-2	chr11	85311600	85312600	+	988.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016910, intron 1 of 5)	intron (NM_016910, intron 1 of 5)	846.0	NM_016910	53892.0	Mm.45609	NM_016910	ENSMUSG00000020525	Ppm1d	AV338790|Wip1	protein phosphatase 1D magnesium-dependent, delta isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-97109817-2	chr9	97109317	97110317	+	988.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138756, intron 1 of 6)	intron (NM_138756, intron 1 of 6)	1224.0	NM_138756	192287.0	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-77303501-2	chr5	77303001	77304001	+	988.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019836, intron 4 of 6)	B2_Mm1a|SINE|B2	6585.0	NM_019836	56412.0	Mm.129136	NM_019836	ENSMUSG00000036285	Noa1	2610024G14Rik|AU022345|AtNOS1|mAtNOS1	nitric oxide associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82752991-2	chr18	82752491	82753491	+	988.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6048.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122627708-2	chr6	122627228	122628228	+	988.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139218, intron 1 of 3)	intron (NM_139218, intron 1 of 3)	1304.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	13.0	9.0	18.5	6.5	7.5	7.0
Merged-chr11-114796191-2	chr11	114795691	114796691	+	988.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028055)	promoter-TSS (NM_028055)	-299.0	NM_028055	72014.0	Mm.38347	NM_028055	ENSMUSG00000000202	Btbd17	1500005I02Rik|Tango10a	BTB (POZ) domain containing 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80977876-4	chr15	80977414	80978414	+	988.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357669, intron 1 of 20)	CpG	149.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-25010558-4	chr5	25010050	25011050	+	988.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 3 of 15)	intron (NM_145401, intron 3 of 15)	-14797.0	NM_001310480	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117209321-4	chr8	117208818	117209818	+	988.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47701.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5723043-4	chr19	5722546	5723546	+	988.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114595, intron 1 of 17)	intron (NM_001114595, intron 1 of 17)	3271.0	NM_001114595	114601.0	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106153696-4	chr11	106153212	106154212	+	988.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 15 of 15)	intron (NM_011947, intron 15 of 15)	6215.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20770205-4	chr10	20769730	20770730	+	988.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45152.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	135.5	362.5	237.5	217.5	352.5	286.0
Merged-chr15-58022977-2	chr15	58022477	58023477	+	988.4166869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_029418, intron 5 of 5)	intron (NM_029418, intron 5 of 5)	11317.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-149174156-4	chr6	149173655	149174655	+	988.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153963, intron 1 of 4)	intron (NR_153963, intron 1 of 4)	14557.0	NM_001356344	232566.0	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding	1.5	1.0	2.0	1.0	1.0	3.0
Merged-chr7-101553498-4	chr7	101553001	101554001	+	988.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007490, intron 2 of 2)	intron (NM_007490, intron 2 of 2)	2301.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	20.5	74.0	55.5	27.5	39.5	26.5
Merged-chr7-127118789-4	chr7	127118329	127119329	+	988.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133686, intron 1 of 3)	RSINE1|SINE|B4	3200.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5115130-4	chr11	5114611	5115611	+	988.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080595, intron 13 of 14)	intron (NM_080595, intron 13 of 14)	14946.0	NM_001290493	279766.0	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	0.0	13.5	2.0	0.0	6.5	0.0
Merged-chr5-8353885-4	chr5	8353388	8354388	+	988.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 2 of 28)	L1_Mus2|LINE|L1	14272.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102417602-4	chr7	102417105	102418105	+	988.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009287, intron 6 of 11)	intron (NM_009287, intron 6 of 11)	-24090.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133012484-2	chr4	133011984	133012984	+	988.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146155, intron 2 of 6)	CpG-10425	978.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105938017-4	chr8	105937434	105938434	+	988.4027710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013640, intron 1 of 7)	intron (NM_013640, intron 1 of 7)	458.0	NM_013640	19171.0	Mm.787	NM_013640	ENSMUSG00000031897	Psmb10	Mecl-1|Mecl1	proteasome (prosome, macropain) subunit, beta type 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66277117-4	chr14	66276610	66277610	+	988.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	3942.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	18.5	6.0	14.5	13.0	12.5	7.5
Merged-chr18-6240848-3	chr18	6240360	6241360	+	988.388855	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_008448, intron 1 of 25)	CpG	664.0	NM_008448	16573.0	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	36.0	77.5	85.5	66.5	109.5	88.0
Merged-chr18-65524712-4	chr18	65524206	65525206	+	988.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 2 of 6)	intron (NR_105742, intron 2 of 6)	-55524.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	9.0	18.5	11.5	4.5	19.5	23.5
Merged-chr17-87156357-4	chr17	87155851	87156851	+	988.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38591.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	31.5	43.0	48.0	111.5	218.5	170.5
Merged-chr13-95639009-4	chr13	95638496	95639496	+	988.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 30 of 35)	intron (NM_027711, intron 30 of 35)	-20530.0	NM_010169	14062.0	Mm.24816	NM_010169	ENSMUSG00000048376	F2r	AI482343|Cf2r|Par1|ThrR	coagulation factor II (thrombin) receptor	protein-coding	62.0	95.5	67.0	2.0	11.0	19.5
Merged-chr11-69663403-4	chr11	69662899	69663899	+	988.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301710)	promoter-TSS (NM_001301710)	356.0	NR_035455	100316840.0		NR_035455	ENSMUSG00000088752	Mir1934	mir-1934|mmu-mir-1934	microRNA 1934	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126696599-4	chr8	126696096	126697096	+	988.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103160.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	10.5	23.5	10.0	7.0	16.5	19.0
Merged-chr10-81405682-4	chr10	81405173	81406173	+	988.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 7 of 8)	intron (NM_026756, intron 7 of 8)	-3902.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81572386-4	chr7	81571976	81572976	+	988.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004185, intron 1 of 9)	intron (NM_001004185, intron 1 of 9)	1184.0	NM_001004185	434204.0	Mm.181641	NM_001004185	ENSMUSG00000045795	Whamm	BB081391|Whdc1|mKIAA1971	WAS protein homolog associated with actin, golgi membranes and microtubules	protein-coding	34.0	110.0	76.0	23.0	100.0	81.5
Merged-chr17-25240033-6	chr17	25239519	25240519	+	988.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163718)	promoter-TSS (NM_001163718)	97.0	NM_172529	214505.0	Mm.38607	NM_172529	ENSMUSG00000035521	Gnptg	6430527N14Rik|A830081F19|AU067667|AU067744|Mdcp1|Tce7	N-acetylglucosamine-1-phosphotransferase, gamma subunit	protein-coding	44.0	35.5	49.5	12.5	46.5	36.0
Merged-chr9-21184150-4	chr9	21183667	21184667	+	988.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310750)	promoter-TSS (NM_001310750)	66.0	NM_001310750	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60407934-2	chr10	60407434	60408434	+	988.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 26 of 68)	intron (NM_001252635, intron 26 of 68)	8208.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73382936-4	chr14	73382414	73383414	+	988.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008410, intron 1 of 5)	intron (NM_008410, intron 1 of 5)	2375.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121362425-2	chr11	121361925	121362925	+	988.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_139147, intron 2 of 5)	intron (NM_139147, intron 2 of 5)	-7978.0	NM_025793	66840.0	Mm.103986	NM_025793	ENSMUSG00000025173	Wdr45b	0610008N23Rik|AA408735|D16Bwg0193e|WIPI-3|Wdr45l	WD repeat domain 45B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-60990284-4	chr14	60989788	60990788	+	988.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013869, intron 5 of 9)	intron (NM_013869, intron 5 of 9)	47699.0	NM_001164155	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-8643529-3	chr13	8643003	8644003	+	988.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110345, intron 3 of 10)	intron (NR_110345, intron 3 of 10)	227541.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-91139605-3	chr5	91139105	91140105	+	988.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009704)	promoter-TSS (NM_009704)	6.0	NM_009704	11839.0	Mm.8039	NM_009704	ENSMUSG00000029378	Areg	AR|Mcub|Sdgf	amphiregulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr2-84467619-3	chr2	84467111	84468111	+	988.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355271, intron 2 of 8)	MLT1B|LTR|ERVL-MaLR	6563.0	NM_011576	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70578517-3	chr14	70578019	70579019	+	988.3333130000001	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_001360474, intron 1 of 2)	intron (NM_001360474, intron 1 of 2)	420.0	NM_001360474	213484.0	Mm.34191	NM_153136	ENSMUSG00000045211	Nudt18	BC036718	nudix (nucleoside diphosphate linked moiety X)-type motif 18	protein-coding	8.5	18.5	24.5	14.0	16.5	29.5
Merged-chr3-65484591-4	chr3	65484093	65485093	+	988.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43854.0	NM_178892	99929.0	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding	0.0	2.0	0.0	0.0	0.0	0.0
Merged-chr12-69682065-7	chr12	69681524	69682524	+	988.3253779999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001135559)	promoter-TSS (NM_001135559)	-172.0	NM_001135559	20663.0	Mm.3770	NM_001135559	ENSMUSG00000034801	Sos2	SOS-2|mSOS-2	SOS Ras/Rho guanine nucleotide exchange factor 2	protein-coding	30.5	17.0	33.0	44.0	45.5	30.5
Merged-chr19-45749269-5	chr19	45748724	45749724	+	988.313416	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008723, intron 1 of 5)	CpG-7591	339.0	NM_008723	18150.0	Mm.1406	NM_008723	ENSMUSG00000056209	Npm3	Nub1	nucleoplasmin 3	protein-coding	0.0	5.5	0.0	0.0	5.0	0.0
Merged-chr8-90840255-4	chr8	90839743	90840743	+	988.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 1 of 39)	MamRep605|LTR?|LTR?	11408.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	44.0	64.5	56.5	33.0	68.0	46.0
Merged-chr12-111671684-4	chr12	111671218	111672218	+	988.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021273, intron 2 of 7)	CpG-3541	620.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12475566-4	chr19	12475062	12476062	+	988.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172442, intron 7 of 8)	intron (NM_172442, intron 7 of 8)	14783.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	72.0	151.0	137.0	15.0	32.0	25.5
Merged-chr13-95038445-4	chr13	95037956	95038956	+	988.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172263, intron 15 of 19)	L1MA4|LINE|L1	62112.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83714178-4	chr11	83713688	83714688	+	988.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_B2|LTR|ERVK	5184.0	NM_007969	14038.0	Mm.1650	NM_007969	ENSMUSG00000000983	Wfdc18	Expi|Kal1|WDNM1	WAP four-disulfide core domain 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-34041155-4	chr12	34040664	34041664	+	988.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	83493.0	NM_011658	22160.0	Mm.3280	NM_011658	ENSMUSG00000035799	Twist1	M-Twist|Pde|Ska10|Ska<m10Jus>|Twist|bHLHa38|pdt	twist basic helix-loop-helix transcription factor 1	protein-coding	0.5	0.0	1.0	0.5	1.0	0.0
Merged-chr13-9878112-4	chr13	9877616	9878616	+	988.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_033269, exon 5 of 5)	exon (NM_033269, exon 5 of 5)	-112795.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47256111-4	chr19	47255618	47256618	+	988.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163480, intron 4 of 5)	intron (NM_001163480, intron 4 of 5)	17471.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	9.0	5.0	11.5	13.0	4.0	4.5
Merged-chr17-23925317-3	chr17	23924832	23925832	+	988.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7874.0	NM_001077633	620253.0	Mm.390964	NM_001077633	ENSMUSG00000057417	Dcpp3	Dcpp-3|EG620253|SPT-3	demilune cell and parotid protein 3	protein-coding	32.5	114.0	40.0	50.5	67.5	32.0
Merged-chr8-121951153-4	chr8	121950706	121951706	+	988.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016812, intron 1 of 13)	CpG	714.0	NM_001285983	53325.0	Mm.287163	NM_016812	ENSMUSG00000025316	Banp	AA408158|SMAR1	BTG3 associated nuclear protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80680263-4	chr10	80679739	80680739	+	988.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3946.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82908404-4	chr11	82907915	82908915	+	988.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145431)	promoter-TSS (NM_145431)	-20.0	NM_145431	217011.0	Mm.29176	NM_145431	ENSMUSG00000020692	Nle1	AL022765|BC018399|Nle|l11Jus1|l11Jus4	notchless homolog 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-100160799-4	chr3	100160266	100161266	+	988.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175552, intron 2 of 26)	intron (NM_175552, intron 2 of 26)	1641.0	NM_175552	269470.0	Mm.24591	NM_175552	ENSMUSG00000033285	Wdr3	AW546279|D030020G18Rik	WD repeat domain 3	protein-coding	9.0	50.5	24.0	17.0	37.5	20.5
Merged-chr13-93007293-4	chr13	93006788	93007788	+	988.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-66016.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	54.0	56.5	84.5	4.0	8.5	2.0
Merged-chr15-81610480-4	chr15	81609983	81610983	+	988.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177821, exon 4 of 31)	exon (NM_177821, exon 4 of 31)	24269.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143329203-4	chr5	143328721	143329721	+	988.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028379)	promoter-TSS (NM_028379)	17.0	NM_001359445	72881.0	Mm.261606	NM_028379	ENSMUSG00000001844	Zdhhc4	1810021D01Rik|2900029I10Rik|DHHC-4	zinc finger, DHHC domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32569405-2	chr4	32568904	32569904	+	988.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_026843, intron 1 of 4)	intron (NR_026843, intron 1 of 4)	2258.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	150.0	282.0	229.0	168.5	438.5	296.0
Merged-chr9-21003458-3	chr9	21002973	21003973	+	988.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357899, intron 3 of 8)	intron (NM_001357899, intron 3 of 8)	736.0	NM_001357899	66163.0	Mm.427576	NM_023167	ENSMUSG00000003299	Mrpl4	1110017G11Rik	mitochondrial ribosomal protein L4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80350457-4	chr10	80349963	80350963	+	988.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-2015.0	NR_104340	66548.0	Mm.71891	NM_025629	ENSMUSG00000043822	Adamtsl5	2010109H09Rik|Thsd6	ADAMTS-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88829789-4	chr6	88829279	88830279	+	988.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	12156.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-12289824-4	chr12	12289329	12290329	+	988.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	27690.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32635116-4	chr17	32634627	32635627	+	988.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001100187, exon 13 of 13)	exon (NM_001100187, exon 13 of 13)	13808.0	NM_001100187	677156.0	Mm.484117	NM_001100187	ENSMUSG00000062464	Cyp4f37	Gm9705	cytochrome P450, family 4, subfamily f, polypeptide 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134027222-4	chr6	134026705	134027705	+	988.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-8495.0	NM_001303102	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	8.5	4.5	11.0	0.0	16.5	2.5
Merged-chr18-12230163-4	chr18	12229642	12230642	+	988.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008720, intron 1 of 24)	intron (NM_008720, intron 1 of 24)	6244.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	18.5	17.0	32.5	16.0	60.0	49.5
Merged-chr2-166030388-4	chr2	166029868	166030868	+	988.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	37731.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	36.0	94.0	48.5	16.0	95.0	67.5
Merged-chr11-75566718-4	chr11	75566153	75567153	+	988.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 9 of 13)	intron (NM_001199284, intron 9 of 13)	15224.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	10.0	16.5	13.0	6.5	2.5	9.5
Merged-chr1-21036046-4	chr1	21035549	21036549	+	988.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177409, intron 2 of 10)	intron (NM_177409, intron 2 of 10)	43176.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	4.5	17.5	10.5	27.5	40.0	20.0
Merged-chr9-55254081-4	chr9	55253572	55254572	+	988.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	LTR37-int|LTR|ERV1	29553.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127448742-4	chr7	127448221	127449221	+	988.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175163, exon 1 of 3)	exon (NM_175163, exon 1 of 3)	437.0	NM_175163	71131.0	Mm.474533	NM_175163	ENSMUSG00000048921	Zfp689	4933416E05Rik|Znf689	zinc finger protein 689	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78887198-4	chr11	78886679	78887679	+	988.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33608.0	NM_010927	18126.0	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74638110-4	chr11	74637617	74638617	+	988.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001013784, exon 4 of 4)	exon (NM_001013784, exon 4 of 4)	-11378.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	3.5	13.5	6.5	6.5	7.0	14.0
Merged-chr4-109214190-3	chr4	109213686	109214686	+	988.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4227.0	NM_001285895	108802.0	Mm.318248	NM_001033226	ENSMUSG00000028558	Calr4	4933403L16Rik|AU017583	calreticulin 4	protein-coding	0.0	2.5	3.5	0.5	2.5	10.5
Merged-chr7-55957999-4	chr7	55957483	55958483	+	988.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023647, intron 1 of 6)	intron (NM_023647, intron 1 of 6)	4510.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	43.5	82.0	65.5	39.0	111.5	50.5
Merged-chr12-35711782-6	chr12	35711251	35712251	+	988.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16633.0	NR_045050	71581.0	Mm.100110	NR_045050	ENSMUSG00000113985	9130015A21Rik	100043575|Gm4527	RIKEN cDNA 9130015A21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-10841285-4	chr8	10840775	10841775	+	988.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41179.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119167785-4	chr2	119167322	119168322	+	988.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177157)	promoter-TSS (NM_177157)	34.0	NM_177157	320415.0	Mm.86373	NM_177157	ENSMUSG00000046814	Gchfr	2010323F13Rik|GFRP|P35	GTP cyclohydrolase I feedback regulator	protein-coding	0.0	12.0	4.0	3.0	9.5	12.0
Merged-chr11-78475464-4	chr11	78474965	78475965	+	988.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168521, intron 7 of 8)	ORR1F|LTR|ERVL-MaLR	9764.0	NM_026740	52466.0	Mm.131618	NM_026740	ENSMUSG00000020829	Slc46a1	1110002C08Rik|D11Ertd18e|HCP1|Pcft	solute carrier family 46, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83170206-2	chr15	83169706	83170706	+	988.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029787, intron 1 of 8)	intron (NM_029787, intron 1 of 8)	2002.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-40956677-4	chr14	40956185	40957185	+	988.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	-8476.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23581028-2	chr13	23580528	23581528	+	988.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175654)	promoter-TSS (NM_175654)	-574.0	NM_175654	319156.0	Mm.260530	NM_175654	ENSMUSG00000061482	Hist1h4d	-	histone cluster 1, H4d	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-66950644-2	chr10	66950144	66951144	+	988.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30260.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27604882-4	chr7	27604384	27605384	+	988.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007434)	promoter-TSS (NM_007434)	-913.0	NM_007434	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	6.5	1.5	17.0	7.5	3.5	7.5
Merged-chr4-150789353-4	chr4	150788850	150789850	+	988.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-64446.0	NM_001356323	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16085273-4	chr19	16084779	16085779	+	988.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47552.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	68.0	226.0	147.5	51.5	140.5	101.0
Merged-chr2-180779778-2	chr2	180779278	180780278	+	988.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2878.0	NM_080641	140489.0	Mm.134062	NM_080641	ENSMUSG00000045493	Bhlhe23	A930001L02Rik|BETA4|Beta3b|Bhlhb4	basic helix-loop-helix family, member e23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135196551-4	chr5	135196060	135197060	+	988.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011714, exon 2 of 19)	exon (NM_011714, exon 2 of 19)	9237.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123135888-6	chr5	123135443	123136443	+	988.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3314.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94521103-2	chr10	94520603	94521603	+	988.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_172051, intron 1 of 3)	intron (NM_172051, intron 1 of 3)	6246.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133423331-2	chr4	133422815	133423815	+	988.083374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001358455, exon 12 of 12)	3' UTR (NM_001358455, exon 12 of 12)	53539.0	NR_039582	100628620.0		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	3.5	4.0	10.0	8.5	5.5	6.5
Merged-chr16-52091079-4	chr16	52090598	52091598	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	59549.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4190826-4	chr11	4190301	4191301	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	3968.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-82814787-4	chr10	82814257	82815257	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038042, intron 1 of 2)	intron (NR_038042, intron 1 of 2)	2634.0	NR_038042	70003.0	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	22.5	73.0	45.0	25.0	49.0	50.5
Merged-chr19-36918975-4	chr19	36918481	36919481	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028263, exon 2 of 2)	exon (NM_028263, exon 2 of 2)	618.0	NM_028263	72514.0	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	1.5	20.0	2.5	3.0	0.0	3.0
Merged-chr8-124434561-4	chr8	124434053	124435053	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_171824)	promoter-TSS (NM_171824)	-617.0	NM_171824	209966.0	Mm.234233	NM_171824	ENSMUSG00000050751	Pgbd5	2900019M05Rik|AI854313	piggyBac transposable element derived 5	protein-coding	0.0	3.0	0.0	0.0	0.0	2.5
Merged-chr18-70652351-4	chr18	70651818	70652818	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84026.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4009312-4	chr18	4008784	4009784	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-156548.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53249748-4	chr18	53249200	53250200	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	4038.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77840690-4	chr15	77840199	77841199	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 1 of 40)	U6|snRNA|snRNA	1476.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75586433-4	chr11	75585931	75586931	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1648.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65565843-3	chr18	65565332	65566332	+	988.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 1 of 6)	intron (NR_105742, intron 1 of 6)	-14398.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-10287669-4	chr10	10287074	10288074	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	184740.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	1.5	0.0	0.0	0.0	1.0	1.0
Merged-chr15-55252598-4	chr15	55252100	55253100	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145470, exon 9 of 9)	3' UTR (NM_145470, exon 9 of 9)	-55150.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-94708468-4	chr9	94707968	94708968	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 2 of 15)	intron (NM_177909, intron 2 of 15)	38576.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-110545617-4	chr13	110545123	110546123	+	988.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150579.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	4.0	6.5	0.5	0.0	3.0	1.5
Merged-chr7-97077162-4	chr7	97076676	97077676	+	988.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4575.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	7.0	28.5	12.5	13.0	7.0	11.0
Merged-chr16-24637581-4	chr16	24637021	24638021	+	988.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-84334.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79520123-4	chr3	79519649	79520649	+	988.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	47530.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84231287-4	chr15	84230797	84231797	+	988.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133167)	promoter-TSS (NM_133167)	-746.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	27.0	27.5	23.0	2.0	33.0	31.5
Merged-chr9-71160799-4	chr9	71160170	71161170	+	988.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073483, intron 1 of 6)	intron (NR_073483, intron 1 of 6)	1963.0	NM_001271843	64008.0	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93401746-4	chr1	93401239	93402239	+	988.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207031, intron 20 of 23)	intron (NM_207031, intron 20 of 23)	27843.0	NM_001271884	404545.0	Mm.297411	NM_207031	ENSMUSG00000034107	Ano7	Ngep|Ngep-L|Pcanap5|Tmem16g	anoctamin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32347801-4	chr11	32347292	32348292	+	988.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177364)	promoter-TSS (NM_177364)	-19.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65580932-8	chr18	65580467	65581467	+	988.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207255, intron 1 of 5)	CpG	737.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36384672-2	chr18	36384172	36385172	+	988.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081365, intron 2 of 2)	intron (NM_001081365, intron 2 of 2)	36048.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122022501-2	chr2	122022005	122023005	+	988.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-6075.0	NM_144545	78655.0	Mm.458184	NM_144545	ENSMUSG00000027236	Eif3j1	1810016I04Rik|2700079K05Rik|AA409117|AA409446|C78575|Eif3j|Eif3j-1|Eif3j-2|Eif3j2|Eif3s1|eIF-3-alpha-A|eIF-3-alpha-B|eIF3-alpha|eIF3-p35|eIF3j-A|eIF3j-B	eukaryotic translation initiation factor 3, subunit J1	protein-coding	2.5	1.0	0.0	2.5	0.0	3.0
Merged-chr11-69998955-4	chr11	69998527	69999527	+	988.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001291127, exon 3 of 4)	exon (NM_001291127, exon 3 of 4)	1565.0	NM_001291127	78246.0	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-106721342-2	chr13	106720842	106721842	+	988.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	215616.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr15-38383566-2	chr15	38383066	38384066	+	988.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82855.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3197794-8	chr11	3197294	3198294	+	988.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4331.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-14668012-2	chr19	14667512	14668512	+	988.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-69829.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110860851-2	chr5	110860351	110861351	+	988.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016681, intron 7 of 14)	intron (NM_016681, intron 7 of 14)	-18952.0	NM_001267622	209683.0	Mm.295660	NM_024477	ENSMUSG00000033209	Ttc28	2310015L07Rik|6030435N04|AI428795|AI851761|BC002262|TPRBK	tetratricopeptide repeat domain 28	protein-coding	1.5	4.0	4.5	6.0	5.0	7.5
Merged-chr10-60260309-4	chr10	60259816	60260816	+	988.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17312.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121353369-2	chr11	121352869	121353869	+	988.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025793, intron 1 of 9)	intron (NM_025793, intron 1 of 9)	1078.0	NM_025793	66840.0	Mm.103986	NM_025793	ENSMUSG00000025173	Wdr45b	0610008N23Rik|AA408735|D16Bwg0193e|WIPI-3|Wdr45l	WD repeat domain 45B	protein-coding	7.5	9.0	11.0	10.5	6.5	8.0
Merged-chr9-118661596-1	chr9	118661096	118662096	+	988.0	f1_balb.idr	intron (NM_133721, intron 7 of 27)	intron (NM_133721, intron 7 of 27)	-50096.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	57.5	99.0	59.0	26.5	77.5	65.5
Merged-chr4-48116458-2	chr4	48115958	48116958	+	988.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-8461.0	NM_026343	67727.0	Mm.171334	NM_026343	ENSMUSG00000061455	Stx17	4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351	syntaxin 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4501188-2	chr2	4500688	4501688	+	988.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 5 of 23)	RSINE1|SINE|B4	-58566.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-32591192-2	chr6	32590692	32591692	+	988.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3000.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52573219-4	chr13	52572720	52573720	+	988.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046069)	promoter-TSS (NR_046069)	5.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98784826-2	chr11	98784326	98785326	+	988.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-9449.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110005567-2	chr7	110005067	110006067	+	988.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_037959, intron 1 of 2)	intron (NR_037959, intron 1 of 2)	1079.0	NR_037959	69781.0	Mm.440728	NR_037959	ENSMUSG00000101585	1600010M07Rik	-	RIKEN cDNA 1600010M07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-28991081-2	chr19	28990581	28991581	+	988.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302380, intron 1 of 6)	intron (NM_001302380, intron 1 of 6)	729.0	NM_025950	67072.0	Mm.78875	NM_025950	ENSMUSG00000024780	Cdc37l1	2700033A15Rik|BB159850|Cdc37l|Harc	cell division cycle 37-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107011159-1	chr11	107010659	107011659	+	988.0	f1_c57bl6.idr	Intergenic	RMER17C-int|LTR|ERVK	-11634.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	6.5	8.5	7.0	2.0	0.0	4.5
Merged-chr7-97029329-4	chr7	97028832	97029832	+	988.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153591, intron 7 of 13)	intron (NM_153591, intron 7 of 13)	-52419.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	15.5	59.5	59.0	28.0	70.5	51.5
Merged-chr2-30660218-2	chr2	30659718	30660718	+	988.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_136917, intron 2 of 3)	MIRc|SINE|MIR	17793.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-5856456-4	chr15	5855960	5856960	+	988.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	188244.0	NR_155428	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103969813-2	chr11	103969313	103970313	+	988.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007477, intron 2 of 4)	intron (NM_007477, intron 2 of 4)	2942.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131448547-4	chr1	131448046	131449046	+	988.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	78815.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	18.5	26.0	13.5	7.5	12.0	14.5
Merged-chr8-94172608-4	chr8	94172091	94173091	+	988.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008630)	promoter-TSS (NM_008630)	-27.0	NM_008630	17750.0	Mm.147226	NM_008630	ENSMUSG00000031762	Mt2	AA409533|MT-II|Mt-2	metallothionein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37613145-4	chr19	37612656	37613656	+	988.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175353, intron 18 of 21)	intron (NM_175353, intron 18 of 21)	62738.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	14.0	16.5	32.5	10.0	35.0	26.5
Merged-chr18-6459519-4	chr18	6458997	6459997	+	988.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007935, intron 2 of 13)	intron (NM_007935, intron 2 of 13)	31149.0	NR_035446	100316773.0		NR_035446	ENSMUSG00000084514	Mir1893	Mirn1893|mmu-mir-1893	microRNA 1893	ncRNA	6.5	9.5	19.0	7.5	9.5	10.5
Merged-chr17-12771207-2	chr17	12770707	12771707	+	988.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027773, intron 1 of 2)	MTD|LTR|ERVL-MaLR	-1501.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0.0	0.5	0.5	3.0	2.5	1.5
Merged-chr11-118458167-2	chr11	118457667	118458667	+	988.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-3172.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38992366-2	chr18	38991866	38992866	+	988.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175164)	promoter-TSS (NM_175164)	-779.0	NM_001361073	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	2.5	4.5	2.0	0.5	4.0	0.0
Merged-chr3-138976835-1	chr3	138976335	138977335	+	988.0	f1_balb.idr	intron (NM_001356388, intron 4 of 13)	L1_Mur3|LINE|L1	98366.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	0.0	0.0	5.5	0.5	0.0	2.0
Merged-chr16-76356129-4	chr16	76355612	76356612	+	988.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	16937.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135130433-4	chr1	135129953	135130953	+	988.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153383, intron 1 of 36)	(A)n|Simple_repeat|Simple_repeat	2122.0	NR_153383	13924.0	Mm.4450	NM_007955		Ptprv	Esp|OST|OST-PTP	protein tyrosine phosphatase, receptor type, V	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80019344-2	chr7	80018844	80019844	+	988.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5470.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	29.5	51.5	48.0	21.0	49.5	36.5
Merged-chr19-6907773-4	chr19	6907248	6908248	+	987.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012021, intron 2 of 5)	intron (NM_012021, intron 2 of 5)	-1950.0	NM_001166370	67674.0	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36303574-4	chr1	36303092	36304092	+	987.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4141.0	NM_001172206	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30878153-4	chr7	30877671	30878671	+	987.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001043317, intron 3 of 15)	PB1D7|SINE|Alu	857.0	NM_009845	12483.0	Mm.260994	NM_009845	ENSMUSG00000030577	Cd22	A530093D23|Lyb-8|Lyb8	CD22 antigen	protein-coding	2.0	9.5	22.0	7.5	20.0	11.5
Merged-chr7-118764159-4	chr7	118763669	118764669	+	987.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027815, intron 8 of 30)	RMER19B|LTR|ERVK	23898.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	15.5	69.5	24.5	14.5	21.0	23.0
Merged-chr2-165946365-4	chr2	165945855	165946855	+	987.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-46282.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	12.0	68.5	13.5	17.5	55.0	55.5
Merged-chr9-65890246-4	chr9	65889767	65890767	+	987.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026515)	promoter-TSS (NM_026515)	-56.0	NM_026515	68026.0	Mm.351273	NM_026515	ENSMUSG00000040204	Pclaf	2810417H13Rik|AA409629|Ns5apt9|Ns5atp9|PAF15|Paf|mKIAA0101|p15(PAF)	PCNA clamp associated factor	protein-coding	0.0	2.0	0.0	0.0	0.0	0.0
Merged-chr3-97628735-4	chr3	97628243	97629243	+	987.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161765)	promoter-TSS (NM_001161765)	-61.0	NM_010232	14263.0	Mm.385180	NM_010232	ENSMUSG00000028088	Fmo5	5033418D19Rik|AI195026	flavin containing monooxygenase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98992701-4	chr15	98992206	98993206	+	987.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6741.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-185350055-3	chr1	185349550	185350550	+	987.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347210, intron 7 of 9)	intron (NM_001347210, intron 7 of 9)	-12994.0	NM_029735	107508.0	Mm.154511	NM_029735	ENSMUSG00000026615	Eprs	2410081F06Rik|3010002K18Rik|C79379|Qprs	glutamyl-prolyl-tRNA synthetase	protein-coding	1.5	1.0	1.0	13.5	14.0	32.5
Merged-chr8-72295220-4	chr8	72294723	72295723	+	987.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-23839.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	117.5	303.0	226.5	174.5	323.0	227.0
Merged-chr7-81862553-4	chr7	81862050	81863050	+	987.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291282)	promoter-TSS (NM_001291282)	-137.0	NM_001291282	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67450301-4	chr17	67449809	67450809	+	987.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95818.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64471758-4	chr17	64471249	64472249	+	987.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	30943.0	NR_105848	102465228.0		NR_105848	ENSMUSG00000098984	Mir6420	Gm28007|mmu-mir-6420	microRNA 6420	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-109406531-3	chr13	109406035	109407035	+	987.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	81791.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73529397-4	chr2	73528909	73529909	+	987.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153138)	promoter-TSS (NM_153138)	78.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90323108-4	chr16	90322598	90323598	+	987.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38595.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44009068-4	chr19	44008587	44009587	+	987.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167905, intron 7 of 7)	intron (NM_001167905, intron 7 of 7)	20160.0	NM_001001446	226143.0	Mm.329866	NM_001001446	ENSMUSG00000025197	Cyp2c23	AW107714|BC034834|Cyp2c44|b2b386Clo	cytochrome P450, family 2, subfamily c, polypeptide 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101837899-4	chr7	101837372	101838372	+	987.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122739)	promoter-TSS (NM_001122739)	-48.0	NM_001122739	16332.0	Mm.476000	NM_010567	ENSMUSG00000032737	Inppl1	51C|SHIP2	inositol polyphosphate phosphatase-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68459677-4	chr11	68459163	68460163	+	987.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	L1ME2|LINE|L1	27538.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-54795461-4	chr1	54794979	54795979	+	987.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 2 of 27)	MTD|LTR|ERVL-MaLR	130908.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35068473-3	chr8	35067969	35068969	+	987.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-102779.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	0.0	8.0	3.5	6.0	5.5	4.0
Merged-chr1-131339916-3	chr1	131339405	131340405	+	987.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 10 of 22)	intron (NM_001081011, intron 10 of 22)	-60342.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145830350-4	chr6	145829873	145830873	+	987.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21990.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-105054491-4	chr13	105053982	105054982	+	987.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_029879, exon 1 of 6)	5' UTR (NM_029879, exon 1 of 6)	448.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80705197-2	chr10	80704697	80705697	+	987.875	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027829, exon 10 of 10)	3' UTR (NM_027829, exon 10 of 10)	2504.0	NM_027829	71564.0	Mm.35802	NM_027829	ENSMUSG00000055862	Izumo4	9030607L17Rik|AI550407	IZUMO family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69126052-4	chr3	69125532	69126532	+	987.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008467, intron 1 of 16)	intron (NM_008467, intron 1 of 16)	1060.0	NM_008467	16649.0	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	86.5	230.0	151.5	49.5	221.5	192.5
Merged-chr10-68472988-4	chr10	68472507	68473507	+	987.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028491, intron 5 of 7)	intron (NM_028491, intron 5 of 7)	68868.0	NM_028491	73287.0	Mm.141830	NM_028491	ENSMUSG00000019945	Cabcoco1	1700040L02Rik	ciliary associated calcium binding coiled-coil 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10765056-4	chr17	10764569	10765569	+	987.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	Lx7|LINE|L1	75122.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47281070-4	chr19	47280586	47281586	+	987.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164717, intron 9 of 13)	intron (NM_001164717, intron 9 of 13)	-7497.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	9.5	25.0	15.5	1.5	0.5	4.5
Merged-chr5-29853261-4	chr5	29852758	29853758	+	987.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117322.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80355008-4	chr11	80354493	80355493	+	987.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_139228, exon 9 of 9)	3' UTR (NM_139228, exon 9 of 9)	23022.0	NM_027472	70591.0	Mm.86860	NM_027472	ENSMUSG00000057181	5730455P16Rik	-	RIKEN cDNA 5730455P16 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42130863-4	chr19	42130396	42131396	+	987.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1903.0	NM_027106	69534.0	Mm.30060	NM_027106	ENSMUSG00000018821	Avpi1	2310008N12Rik|AA410041|VIT32|esu|mVIT32	arginine vasopressin-induced 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106972036-4	chr8	106971529	106972529	+	987.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009229, intron 1 of 6)	intron (NM_009229, intron 1 of 6)	36279.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	5.5	14.5	8.0	14.0	10.0	25.0
Merged-chr5-34187224-4	chr5	34186764	34187764	+	987.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010753, intron 2 of 5)	CpG	446.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	1.0	13.5	9.5	6.5	3.0	8.0
Merged-chr7-81155170-4	chr7	81154664	81155664	+	987.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004184, intron 11 of 17)	intron (NM_001004184, intron 11 of 17)	40365.0	NM_001004184	434203.0	Mm.389909	NM_001004184	ENSMUSG00000025726	Slc28a1	Cnt1	solute carrier family 28 (sodium-coupled nucleoside transporter), member 1	protein-coding	0.0	0.0	1.0	0.0	4.0	3.0
Merged-chr5-130044304-4	chr5	130043782	130044782	+	987.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007761, intron 4 of 5)	intron (NM_007761, intron 4 of 5)	14976.0	NM_007761	12909.0	Mm.18072	NM_007761	ENSMUSG00000025532	Crcp	AL022669	calcitonin gene-related peptide-receptor component protein	protein-coding	3.5	8.5	1.0	0.0	0.5	6.5
Merged-chr3-123481470-4	chr3	123480954	123481954	+	987.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008939, intron 4 of 10)	intron (NM_008939, intron 4 of 10)	26612.0	NR_028573	100306957.0	Mm.260791	NR_028573	ENSMUSG00000092730	Snora24	ACA24	small nucleolar RNA, H/ACA box 24	snoRNA	2.0	9.0	7.0	6.5	3.5	9.0
Merged-chr14-14870667-4	chr14	14870146	14871146	+	987.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195229, intron 21 of 34)	intron (NM_001195229, intron 21 of 34)	49831.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	3.0	6.5	0.0	3.0	9.0	0.0
Merged-chr7-19500493-5	chr7	19499992	19500992	+	987.8444210000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7839.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38436121-2	chr2	38435621	38436621	+	987.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER77B|LTR|ERVL	-75576.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119492301-2	chr13	119491801	119492801	+	987.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177666, intron 1 of 3)	intron (NM_001177666, intron 1 of 3)	3441.0	NM_001177666	633640.0	Mm.46679	NM_001039244	ENSMUSG00000074634	Tmem267	EG633640|Gm7120	transmembrane protein 267	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35233682-2	chr17	35233180	35234180	+	987.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010909, intron 2 of 3)	intron (NM_010909, intron 2 of 3)	-1330.0	NM_001347351	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	69.5	155.5	87.0	24.5	92.0	55.0
Merged-chr3-15284628-4	chr3	15284131	15285131	+	987.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47671.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	34.5	65.5	64.0	39.0	57.5	66.0
Merged-chr15-84923787-3	chr15	84923361	84924361	+	987.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016714, intron 1 of 7)	CpG	433.0	NM_016714	18141.0	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101384664-4	chr7	101384160	101385160	+	987.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027180)	promoter-TSS (NM_027180)	-866.0	NM_027180	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64367792-4	chr1	64367282	64368282	+	987.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-165022.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-46987761-3	chr7	46987254	46988254	+	987.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_033461)	TTS (NR_033461)	11122.0	NR_033461	629141.0	Mm.229259	NR_033461	ENSMUSG00000056509	Gm9999	-	predicted gene 9999	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3169188-3	chr11	3168674	3169674	+	987.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 7 of 32)	B1_Mus1|SINE|Alu	24289.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-143948169-4	chr2	143947646	143948646	+	987.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024281, intron 23 of 23)	intron (NM_024281, intron 23 of 23)	32815.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29371200-4	chr17	29370701	29371701	+	987.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159538, intron 9 of 15)	intron (NM_001159538, intron 9 of 15)	10287.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	16.0	15.5	23.5	7.0	33.5	18.0
Merged-chr1-162563433-4	chr1	162562945	162563945	+	987.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7070.0	NM_001356527	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	2.5	4.0	2.5	3.5	0.0	0.0
Merged-chr11-117168835-4	chr11	117168342	117169342	+	987.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-30819.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65973510-4	chr3	65973014	65974014	+	987.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15265.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	3.0	13.5	10.5	3.0	13.5	11.5
Merged-chr4-98384769-4	chr4	98384266	98385266	+	987.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1501.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-15848203-4	chr13	15847690	15848690	+	987.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155430, intron 3 of 3)	intron (NR_155430, intron 3 of 3)	40947.0	NR_046131	328190.0	Mm.446957	NR_046131	ENSMUSG00000113338	A530046M15Rik	A530046M15	RIKEN cDNA A530046M15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143315167-7	chr5	143314620	143315620	+	987.785706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172726, exon 1 of 6)	5' UTR (NM_172726, exon 1 of 6)	240.0	NM_172726	231868.0	Mm.440105	NM_172726	ENSMUSG00000039244	E130309D02Rik	A630028N22	RIKEN cDNA E130309D02 gene	protein-coding	3.5	13.5	2.0	5.0	7.5	6.0
Merged-chr12-91778637-3	chr12	91778144	91779144	+	987.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	CpG	7792.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67118560-4	chr15	67118063	67119063	+	987.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 3 of 8)	ORR1E|LTR|ERVL-MaLR	58319.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	13.5	28.0	8.0	14.5	20.5	8.5
Merged-chr11-68468174-4	chr11	68467659	68468659	+	987.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	-34860.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171504164-4	chr1	171503671	171504671	+	987.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019484, exon 1 of 1)	exon (NM_019484, exon 1 of 1)	693.0	NM_019484	56009.0	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	39.0	119.0	92.0	81.0	132.0	106.0
Merged-chr7-19095678-2	chr7	19095178	19096178	+	987.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011383, intron 1 of 2)	intron (NM_011383, intron 1 of 2)	1134.0	NM_011383	20475.0	Mm.3410	NM_011383	ENSMUSG00000040841	Six5	Dmahp|MDMAHP|TrexBF	sine oculis-related homeobox 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56254735-2	chr17	56254235	56255235	+	987.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-2058.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-37426029-4	chr6	37425542	37426542	+	987.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	MT2B2|LTR|ERVL	16106.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39778677-4	chr6	39778189	39779189	+	987.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32247.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97580929-4	chr15	97580418	97581418	+	987.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	124904.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30761429-4	chr14	30760932	30761932	+	987.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166531, intron 2 of 21)	L2a|LINE|L2	45817.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	14.5	24.5	26.0	10.0	30.5	21.5
Merged-chr5-125409037-4	chr5	125408533	125409533	+	987.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Asp-GAY|tRNA|tRNA	-19016.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-89902382-4	chr1	89901893	89902893	+	987.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28783.0	NM_010262	14472.0	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29484621-6	chr19	29484071	29485071	+	987.7222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	37416.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87527587-4	chr11	87527081	87528081	+	987.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 18 of 30)	RMER1C|Other|Other	-50808.0	NM_001361936	18952.0	Mm.2214	NM_011129	ENSMUSG00000020486	Sept4	ARTS|Bh5|Pnutl2	septin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-81973834-4	chr11	81973331	81974331	+	987.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5435.0	NM_001034013	11418.0	Mm.234998	NM_007384	ENSMUSG00000020704	Asic2	ACIC2|Accn1|BNC1|BNaC1|BNaC1a|Mdeg	acid-sensing (proton-gated) ion channel 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108404876-4	chr6	108404373	108405373	+	987.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 33 of 61)	L1MB7|LINE|L1	-84870.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34240761-4	chr19	34240261	34241261	+	987.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360716)	TTS (NM_001360716)	8136.0	NM_001360720	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	9.5	2.5	17.5	5.0	17.5	8.5
Merged-chr1-185362925-4	chr1	185362376	185363376	+	987.6785890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029735)	promoter-TSS (NM_029735)	-168.0	NM_029735	107508.0	Mm.154511	NM_029735	ENSMUSG00000026615	Eprs	2410081F06Rik|3010002K18Rik|C79379|Qprs	glutamyl-prolyl-tRNA synthetase	protein-coding	242.0	512.0	451.5	216.5	517.0	463.5
Merged-chr16-4777315-4	chr16	4776797	4777797	+	987.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358082, intron 1 of 5)	intron (NM_001358082, intron 1 of 5)	12165.0	NM_001358078	66626.0	Mm.157648	NM_025670	ENSMUSG00000004071	Cdip1	2700048O17Rik|5730403B10Rik|AU018521|AW742692|CDIP	cell death inducing Trp53 target 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-126607705-4	chr2	126607194	126608194	+	987.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008230, intron 2 of 11)	intron (NM_008230, intron 2 of 11)	10984.0	NM_008230	15186.0	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-84798108-2	chr11	84797608	84798608	+	987.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21407.0	NM_145433	217038.0	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik	mitochondrial rRNA methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-117470648-4	chr7	117470153	117471153	+	987.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175645, intron 1 of 11)	intron (NM_175645, intron 1 of 11)	89674.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123562576-4	chr4	123562085	123563085	+	987.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-53835.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22708732-3	chr8	22708235	22709235	+	987.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-2152.0	NM_001159774	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-80340132-6	chr1	80339626	80340626	+	987.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016716, intron 1 of 15)	intron (NM_016716, intron 1 of 15)	564.0	NM_001313728	26554.0	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127287187-2	chr10	127286687	127287687	+	987.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347171, intron 3 of 12)	intron (NM_001347171, intron 3 of 12)	1831.0	NM_001347171	110962.0	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84854752-3	chr12	84854258	84855258	+	987.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013589, intron 2 of 34)	URR1B|DNA|hAT-Charlie	-21044.0	NR_028577	100303738.0	Mm.479389	NR_028577	ENSMUSG00000092130	D030025P21Rik	-	RIKEN cDNA D030025P21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59439557-4	chr15	59439068	59440068	+	987.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 3 of 4)	ORR1E|LTR|ERVL-MaLR	65370.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	61.5	88.5	67.5	55.5	90.0	76.0
Merged-chr17-33980098-2	chr17	33979600	33980600	+	987.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-1309.0	NR_004446	630499.0	Mm.440940	NM_001081015		H2-K2	EG630499|Gm7035|H-2K1|H-2K1K|H-2K2|H2-K1	histocompatibility 2, K region locus 2	pseudo	95.0	155.0	87.5	4.0	7.0	7.5
Merged-chr9-118764383-2	chr9	118763808	118764808	+	987.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	52616.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	1.0	6.5	5.0	0.0	0.5	1.0
Merged-chr19-56391894-2	chr19	56391394	56392394	+	987.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1856.0	NM_001286552	18175.0	Mm.386769	NM_008733	ENSMUSG00000049134	Nrap	-	nebulin-related anchoring protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98778081-2	chr13	98777581	98778581	+	987.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172591, intron 6 of 25)	intron (NM_172591, intron 6 of 25)	37368.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	2.5	2.0	7.0	1.0	8.5	4.5
Merged-chr3-30594354-2	chr3	30593854	30594854	+	987.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5516.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	0.0	0.0	0.0	0.0	5.5	5.0
Merged-chr5-114127583-4	chr5	114127112	114128112	+	987.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001359940, exon 2 of 4)	exon (NM_001359940, exon 2 of 4)	606.0	NM_001359940	231642.0	Mm.332593	NM_175016	ENSMUSG00000044339	Alkbh2	9530023G02|AU016977|Abh2|mABH2	alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-24547457-4	chr8	24546953	24547953	+	987.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145949, intron 5 of 9)	Lx5c|LINE|L1	28880.0	NM_145949	209176.0	Mm.219580	NM_145949	ENSMUSG00000031549	Ido2	AI265623|C230043N17Rik|Ido-2|Indol1	indoleamine 2,3-dioxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118665664-4	chr9	118665166	118666166	+	987.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 8 of 27)	intron (NM_133721, intron 8 of 27)	-46026.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30944300-7	chr14	30943807	30944807	+	987.642883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1018.0	NM_001306078	16424.0	Mm.3227	NM_008406	ENSMUSG00000006529	Itih1	ITI-HC1|Intin1|Itih-1	inter-alpha trypsin inhibitor, heavy chain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45074746-11	chr19	45074266	45075266	+	987.636353	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362398)	promoter-TSS (NM_001362398)	-475.0	NM_001362398	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122052048-4	chr10	122051540	122052540	+	987.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4725.0	NM_001081037	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-18331237-4	chr14	18330742	18331742	+	987.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009455, intron 1 of 5)	CpG	602.0	NM_009455	22194.0	Mm.4429	NM_009455	ENSMUSG00000021774	Ube2e1	UbcM3|Ubce5|ubcM2	ubiquitin-conjugating enzyme E2E 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65941241-4	chr3	65940734	65941734	+	987.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	17015.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	8.5	6.0	7.5	6.5	4.0	1.5
Merged-chr14-17878628-4	chr14	17878131	17879131	+	987.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-103013.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56883871-4	chr17	56883371	56884371	+	987.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030141, intron 10 of 13)	intron (NM_030141, intron 10 of 13)	8238.0	NM_030141	78625.0	Mm.160106	NM_030141	ENSMUSG00000024209	1700061G19Rik	1700026H02|AI507598	RIKEN cDNA 1700061G19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84975003-4	chr8	84974505	84975505	+	987.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011563)	TTS (NM_011563)	3743.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	100.5	498.0	246.0	189.0	556.0	318.0
Merged-chr4-123618189-4	chr4	123617688	123618688	+	987.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	1768.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34536060-4	chr5	34535559	34536559	+	987.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	-7306.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39026597-3	chr18	39026094	39027094	+	987.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 1 of 21)	intron (NM_001361073, intron 1 of 21)	33449.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132513619-4	chr4	132513137	132514137	+	987.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3181.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113444678-4	chr13	113444197	113445197	+	987.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR40b|LTR|ERVL	58147.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66383546-4	chr9	66383042	66384042	+	987.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145617, intron 3 of 77)	T-rich|Low_complexity|Low_complexity	33092.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32884664-3	chr19	32884159	32885159	+	987.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	127082.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	20.5	29.0	10.5	4.0	10.0	9.5
Merged-chr6-52672796-4	chr6	52672306	52673306	+	987.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER45B|DNA|hAT-Tip100	-32506.0	NM_145567	58875.0	Mm.286458	NM_145567	ENSMUSG00000029776	Hibadh	6430402H10Rik|AI265272	3-hydroxyisobutyrate dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150593994-4	chr4	150593517	150594517	+	987.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	58157.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6715883-4	chr2	6715396	6716396	+	987.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	5766.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117327123-4	chr2	117326622	117327622	+	987.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 2 of 16)	intron (NM_011246, intron 2 of 16)	15755.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-96554361-3	chr7	96553788	96554788	+	987.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 5 of 32)	intron (NM_011858, intron 5 of 32)	-212324.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr17-35439508-3	chr17	35439007	35440007	+	987.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001201460, exon 2 of 7)	exon (NM_001201460, exon 2 of 7)	340.0	NM_001201460	110558.0	Mm.431282	NM_001201460		H2-Q9	H-2Q9|Ped|Qa-2|Qa-9|Qa9	histocompatibility 2, Q region locus 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-89025722-4	chr11	89025215	89026215	+	987.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26312.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	106.0	223.5	199.5	69.0	168.0	152.0
Merged-chr2-71529708-4	chr2	71529193	71530193	+	987.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_002854)	TTS (NR_002854)	248.0	NM_010053	13390.0	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-149891270-4	chr1	149890768	149891768	+	987.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 5 of 17)	intron (NM_008869, intron 5 of 17)	31171.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153496554-4	chr2	153496015	153497015	+	987.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134300, intron 1 of 10)	intron (NM_001134300, intron 1 of 10)	33456.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-82867081-4	chr10	82866582	82867582	+	987.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025499, exon 1 of 1)	exon (NM_025499, exon 1 of 1)	456.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-12983365-4	chr1	12982844	12983844	+	987.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172841, intron 1 of 8)	intron (NM_172841, intron 1 of 8)	7791.0	NM_172841	240726.0	Mm.24481	NM_172841	ENSMUSG00000025938	Slco5a1	4732454B15|A630033C23Rik|AA407151	solute carrier organic anion transporter family, member 5A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90904944-7	chr5	90904391	90905391	+	987.5238039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009140, intron 3 of 3)	intron (NM_009140, intron 3 of 3)	992.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150587299-2	chr4	150586799	150587799	+	987.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	ID_B1|SINE|B4	64875.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45754384-2	chr17	45753884	45754884	+	987.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	19878.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110386247-6	chr5	110385660	110386660	+	987.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142642, intron 5 of 18)	intron (NM_001142642, intron 5 of 18)	967.0	NM_028596	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	1.5	47.0	12.5	1.5	14.5	12.5
Merged-chr9-83443910-2	chr9	83443410	83444410	+	987.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_102437, intron 1 of 2)	RMER1B|Other|Other	-2783.0	NM_029434	75782.0	Mm.199698	NM_027448	ENSMUSG00000032258	Lca5	4930431B11Rik|5730406O13Rik|AV274874|ORF64	Leber congenital amaurosis 5 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29269983-2	chr6	29269483	29270483	+	987.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2505.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80829174-1	chr7	80828674	80829674	+	987.5	f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-25843.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	16.0	18.0	15.0	13.0	25.5	27.5
Merged-chr6-116083433-4	chr6	116082956	116083956	+	987.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	-88451.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-14677182-4	chr19	14676673	14677673	+	987.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11B|LTR|ERVK	-78990.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152832532-4	chr1	152832019	152833019	+	987.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 11 of 15)	RSINE1|SINE|B4	32366.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20743565-2	chr18	20743065	20744065	+	987.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 1 of 8)	RSINE1|SINE|B4	2839.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-47275791-2	chr4	47275291	47276291	+	987.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 14 of 39)	intron (NM_009928, intron 14 of 39)	67779.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85543049-4	chr12	85542562	85543562	+	987.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-56043.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-3745396-2	chr16	3744896	3745896	+	987.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_148924, intron 1 of 5)	intron (NM_148924, intron 1 of 5)	1297.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-83742379-4	chr2	83741865	83742865	+	987.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008402, intron 2 of 29)	Charlie24|DNA|hAT-Charlie	17968.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-35840080-2	chr11	35839580	35840580	+	987.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_170779, intron 22 of 22)	intron (NM_170779, intron 22 of 22)	-5552.0	NM_025936	104458.0	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101975135-2	chr11	101974635	101975635	+	987.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028207, intron 2 of 2)	intron (NM_028207, intron 2 of 2)	-8120.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr8-126842068-2	chr8	126841568	126842568	+	987.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-6952.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35240138-2	chr17	35239638	35240638	+	987.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1608.0	NM_019693	53817.0	Mm.439827	NM_019693	ENSMUSG00000019432	Ddx39b	0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	protein-coding	10.0	30.5	22.0	2.5	34.5	12.0
Merged-chr12-84769988-2	chr12	84769488	84770488	+	987.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 1 of 3)	intron (NM_023409, intron 1 of 3)	3124.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64302304-2	chr1	64301804	64302804	+	987.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER99|DNA|hAT?	-180915.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-102545195-2	chr9	102544695	102545695	+	987.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_024291, exon 11 of 11)	3' UTR (NM_024291, exon 11 of 11)	39057.0	NM_024291	16716.0	Mm.101692	NM_024291	ENSMUSG00000035606	Ky	CD1|D9Mgc44e|ky	kyphoscoliosis peptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99739150-4	chr12	99738652	99739652	+	987.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030172, intron 5 of 5)	intron (NM_030172, intron 5 of 5)	-111178.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8925076-2	chr12	8924576	8925576	+	987.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008640, intron 1 of 6)	intron (NM_008640, intron 1 of 6)	3769.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66153639-2	chr5	66153139	66154139	+	987.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1685.0	NM_001127382	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	14.0	7.0	11.5	14.0	7.5	9.0
Merged-chr3-116126688-4	chr3	116126104	116127104	+	987.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011693, intron 2 of 8)	MIR3|SINE|MIR	3084.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	38.5	45.0	31.5	17.0	65.5	31.5
Merged-chr12-52304122-4	chr12	52303609	52304609	+	987.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029760, intron 9 of 10)	intron (NM_029760, intron 9 of 10)	176500.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	0.5	8.0	22.0	13.0	16.0	16.0
Merged-chr3-60486103-4	chr3	60485576	60486576	+	987.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253713, intron 2 of 9)	intron (NM_001253713, intron 2 of 9)	13246.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80057681-4	chr12	80057191	80058191	+	987.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55322.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-30027889-4	chr17	30027386	30028386	+	987.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151443, intron 1 of 4)	intron (NR_151443, intron 1 of 4)	22847.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0.0	25.0	2.0	0.0	23.0	3.5
Merged-chr10-60245181-4	chr10	60244662	60245662	+	987.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25902.0	NM_016803	53374.0	Mm.12866	NM_016803	ENSMUSG00000057337	Chst3	C6ST|C6ST-1|GST-0	carbohydrate (chondroitin 6/keratan) sulfotransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16175351-4	chr7	16174866	16175866	+	987.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302472)	promoter-TSS (NM_001302472)	-29.0	NM_001277988	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88574177-5	chr10	88573677	88574677	+	987.4466550000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252372, intron 2 of 28)	intron (NM_001252372, intron 2 of 28)	30975.0	NM_001252372	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94173885-3	chr13	94173386	94174386	+	987.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	111395.0	NM_029153	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-126987433-4	chr10	126986937	126987937	+	987.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113470, intron 1 of 7)	intron (NM_001113470, intron 1 of 7)	-8093.0	NR_029803	723962.0		NR_029803	ENSMUSG00000065430	Mir26a-2	Mirn26a-2|mir-26a-2	microRNA 26a-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17722774-4	chr16	17722218	17723218	+	987.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285886, intron 1 of 16)	CpG	182.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101826691-4	chr5	101826197	101827197	+	987.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	61567.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155833989-4	chr4	155833505	155834505	+	987.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025338)	TTS (NM_025338)	2736.0	NM_025338	66077.0	Mm.28999	NM_025338	ENSMUSG00000065990	Aurkaip1	0610033H09Rik|Aip|Akip|MRP-S38	aurora kinase A interacting protein 1	protein-coding	1.0	20.0	4.0	0.0	8.5	4.5
Merged-chr5-100624964-4	chr5	100624444	100625444	+	987.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49312.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	9.5	11.5	4.5	6.0	13.0	5.5
Merged-chr8-10711240-4	chr8	10710735	10711735	+	987.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	171219.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7177012-4	chr9	7176509	7177509	+	987.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029851)	promoter-TSS (NM_029851)	37.0	NM_029851	110350.0	Mm.237596	NM_029851	ENSMUSG00000047193	Dync2h1	4432416O06Rik|AI448217|D030010H02Rik|D330044F14Rik|DHC1b|DHC2|Dnchc2|b2b414Clo|mKIAA1997	dynein cytoplasmic 2 heavy chain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52046226-4	chr3	52045726	52046726	+	987.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	58780.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57555912-4	chr16	57555425	57556425	+	987.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	6683.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	31.0	50.0	42.0	27.5	47.0	38.5
Merged-chr12-118758209-4	chr12	118757679	118758679	+	987.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88150.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87330947-4	chr3	87330361	87331361	+	987.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-27020.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	37.0	141.5	71.5	57.5	166.0	90.0
Merged-chr2-150874736-4	chr2	150874239	150875239	+	987.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 1 of 12)	intron (NR_151505, intron 1 of 12)	29992.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6090511-2	chr19	6090011	6091011	+	987.416626	f1_balb.idr|f1_c57bl6.idr	exon (NM_026410, exon 5 of 6)	exon (NM_026410, exon 5 of 6)	-3908.0	NM_001362427	225852.0	Mm.301487	NM_001362427		Gm550	-	predicted gene 550	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120156631-2	chr6	120156131	120157131	+	987.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	BC1_Mm|scRNA|scRNA	-37192.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75021538-3	chr15	75021038	75022038	+	987.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23507.0	NM_010738	110454.0	Mm.425949	NM_010738	ENSMUSG00000075602	Ly6a	Ly-6A.2|Ly-6A/E|Ly-6E.1|Sca-1|Sca1|TAP	lymphocyte antigen 6 complex, locus A	protein-coding	4.5	12.0	6.0	0.0	0.0	0.0
Merged-chr8-73234182-4	chr8	73233685	73234685	+	987.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010687, intron 1 of 14)	intron (NM_010687, intron 1 of 14)	119355.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-86873284-4	chr8	86872778	86873778	+	987.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	11980.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	20.5	38.5	28.0	14.5	53.5	19.5
Merged-chr6-38982304-4	chr6	38981805	38982805	+	987.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 4 of 12)	MTD|LTR|ERVL-MaLR	63319.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95987163-4	chr3	95986740	95987740	+	987.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045872)	TTS (NR_045872)	1730.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	283.0	609.0	463.0	224.0	620.5	466.0
Merged-chr18-54997748-4	chr18	54997234	54998234	+	987.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5143.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89175636-4	chr15	89175140	89176140	+	987.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	-1689.0	NM_001159521	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125555212-2	chr7	125554699	125555699	+	987.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008700, intron 1 of 10)	MIRc|SINE|MIR	2917.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	190.5	460.0	303.5	96.0	311.0	169.5
Merged-chr16-55504431-2	chr16	55503931	55504931	+	987.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9700.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3641224-4	chr2	3640703	3641703	+	987.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72255.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38812686-3	chr16	38812182	38813182	+	987.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029042, intron 3 of 3)	B3A|SINE|B2	-12479.0	NM_178924	22268.0	Mm.130793	NM_178924	ENSMUSG00000049436	Upk1b	AI413235|Tspan20|UPIb|Upk1	uroplakin 1B	protein-coding	2.5	2.0	1.0	9.0	2.5	2.0
Merged-chr2-156258278-3	chr2	156257799	156258799	+	987.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172674, intron 4 of 17)	B1_Mur4|SINE|Alu	-54174.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	34.0	62.5	42.0	39.5	37.5	37.0
Merged-chr3-130079944-4	chr3	130079451	130080451	+	987.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19044.0	NM_207209	99683.0	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57759173-4	chr10	57758692	57759692	+	987.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25731.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77980839-3	chr11	77980331	77981331	+	987.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1985.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97029928-4	chr11	97029446	97030446	+	987.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146027)	promoter-TSS (NM_146027)	-6.0	NM_146027	217140.0	Mm.46189	NM_146027	ENSMUSG00000020877	Scrn2	AV001119|D11Moh48|SES2	secernin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-56377265-3	chr10	56376756	56377756	+	987.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010288)	promoter-TSS (NM_010288)	-44.0	NM_010288	14609.0	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150750289-3	chr2	150749778	150750778	+	987.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355068, intron 1 of 13)	intron (NM_001355068, intron 1 of 13)	1197.0	NM_172117	12497.0	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45109558-7	chr2	45109158	45110158	+	987.31427	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	CpG	619.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95140988-6	chr8	95140514	95141514	+	987.3110960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010631, intron 1 of 19)	intron (NM_010631, intron 1 of 19)	1526.0	NM_010631	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	1.0	1.5	13.5	0.0	0.0	0.0
Merged-chr3-137955682-4	chr3	137955194	137956194	+	987.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 3 of 8)	MIR|SINE|MIR	25855.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	7.0	17.5	16.5	4.5	25.5	14.0
Merged-chr11-78213281-4	chr11	78212776	78213776	+	987.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009297, exon 29 of 37)	exon (NM_009297, exon 29 of 37)	19884.0	NM_001045516	216974.0	Mm.50974	NM_001045516	ENSMUSG00000044122	Proca1	4933404M19Rik	protein interacting with cyclin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165583735-4	chr1	165583238	165584238	+	987.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50803.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-151999675-4	chr4	151999187	152000187	+	987.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3508.0	NM_172705	230936.0	Mm.25582	NM_172705	ENSMUSG00000047777	Phf13	BC029632|Phf5|SPOC1	PHD finger protein 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3724832-4	chr4	3724272	3725272	+	987.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	(GA)n|Simple_repeat|Simple_repeat	9808.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	31.0	51.5	21.5	6.0	20.0	28.0
Merged-chr12-52637943-4	chr12	52637434	52638434	+	987.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-35612.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	0.0	4.5	1.0	8.0	2.0	0.0
Merged-chr1-173961649-4	chr1	173961198	173962198	+	987.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011940)	TTS (NM_011940)	-19026.0	NM_001302650	15950.0	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Ifi203a|Ifi203b|Mndal	interferon activated gene 203	protein-coding	5.5	15.5	19.0	37.5	60.5	41.0
Merged-chr9-10566008-4	chr9	10565524	10566524	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033359, intron 2 of 20)	intron (NM_001033359, intron 2 of 20)	338702.0	NM_001033359	244682.0	Mm.187021	NM_001033359	ENSMUSG00000039488	Cntn5	6720426O10Rik|A830025P08Rik|Gm507|NB-2	contactin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109420460-2	chr4	109419960	109420960	+	987.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145948, intron 2 of 17)	intron (NM_001145948, intron 2 of 17)	4813.0	NM_001145948	230603.0	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83131847-4	chr8	83131308	83132308	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33544.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33583969-4	chr16	33583357	33584357	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 4 of 11)	intron (NM_001083902, intron 4 of 11)	65262.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166729848-4	chr2	166729350	166730350	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16018.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95778946-4	chr13	95778472	95779472	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 2 of 35)	intron (NM_027711, intron 2 of 35)	82052.0	NM_010170	14064.0	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	20.5	57.0	42.5	1.5	11.0	7.5
Merged-chr19-11602177-4	chr19	11601678	11602678	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026835, intron 2 of 6)	intron (NM_026835, intron 2 of 6)	2626.0	NM_026835	68774.0	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	25.5	48.5	40.0	4.5	6.5	26.0
Merged-chr2-129629771-2	chr2	129629250	129630250	+	987.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291019, intron 7 of 7)	intron (NM_001291019, intron 7 of 7)	34288.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	4.5	29.0	14.5	6.0	7.5	17.5
Merged-chr9-77544864-4	chr9	77544375	77545375	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172528)	promoter-TSS (NM_172528)	-23.0	NM_001146048	214345.0	Mm.28534	NM_172528	ENSMUSG00000032352	Lrrc1	A430093J20Rik|AU016091|D030059I21|mKIAA4018	leucine rich repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56797544-4	chr19	56797042	56798042	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_170757, exon 11 of 15)	exon (NM_170757, exon 11 of 15)	16141.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111166930-2	chr12	111166430	111167430	+	987.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286122, intron 1 of 9)	CpG	560.0	NM_011632	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84516604-4	chr10	84516100	84517100	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17288.0	NM_175451	216197.0	Mm.334999	NM_175451	ENSMUSG00000046841	Ckap4	5630400A09Rik|CLIMP-63|P63	cytoskeleton-associated protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45966171-4	chr4	45965658	45966658	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290475, intron 1 of 16)	intron (NM_001290475, intron 1 of 16)	823.0	NM_001290475	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	4.0	2.0	4.5	2.5	0.0	2.0
Merged-chr11-19839126-4	chr11	19838619	19839619	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-85323.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	0.0	8.0	0.5	1.5	4.0	2.5
Merged-chr15-73512560-4	chr15	73512045	73513045	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081066)	promoter-TSS (NM_001081066)	-15.0	NR_152151	105841.0	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9380866-4	chr18	9380345	9381345	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026484, intron 2 of 9)	intron (NM_026484, intron 2 of 9)	69309.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	14.5	27.0	20.0	12.0	15.5	10.5
Merged-chr1-181840184-4	chr1	181839679	181840679	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133815, intron 1 of 13)	intron (NM_133815, intron 1 of 13)	2222.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101642091-4	chr11	101641631	101642631	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14182.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94355243-4	chr10	94354737	94355737	+	987.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	43288.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-16502107-4	chr5	16501593	16502593	+	987.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51402.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93471397-4	chr2	93470918	93471918	+	987.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8468.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	4.5	0.0	2.5	0.0	2.5	3.5
Merged-chr11-69949026-4	chr11	69948518	69949518	+	987.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009204)	promoter-TSS (NM_009204)	-821.0	NM_001359114	20528.0	Mm.10661	NM_009204	ENSMUSG00000018566	Slc2a4	GT2|Glut-4|Glut4|twgy	solute carrier family 2 (facilitated glucose transporter), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-66906106-4	chr13	66905615	66906615	+	987.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026219)	promoter-TSS (NM_026219)	700.0	NM_001177750	100038538.0	Mm.405005	NM_001177750	ENSMUSG00000074826	Gm10767	-	predicted gene 10767	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17209192-4	chr16	17208677	17209677	+	987.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033338, exon 1 of 1)	exon (NM_001033338, exon 1 of 1)	1042.0	NM_001033338	239731.0	Mm.86671	NM_001033338	ENSMUSG00000071636	Rimbp3	Gm1759|Gm603|RIM-BP3|mKIAA1666	RIMS binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80807435-4	chr10	80806930	80807930	+	987.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007445, exon 5 of 5)	exon (NM_007445, exon 5 of 5)	2182.0	NM_007445	11705.0	Mm.376094	NM_007445	ENSMUSG00000035262	Amh	MIS	anti-Mullerian hormone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34888706-4	chr18	34888216	34889216	+	987.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27509.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53421483-4	chr19	53420947	53421947	+	987.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30813.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124075073-4	chr5	124074574	124075574	+	987.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019875, intron 9 of 11)	intron (NM_019875, intron 9 of 11)	20724.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101412890-4	chr7	101412347	101413347	+	987.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027180)	TTS (NM_027180)	-8844.0	NM_001008548	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	4.0	1.0	2.5	0.0	6.0	9.5
Merged-chr2-155309421-8	chr2	155308929	155309929	+	987.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004721, intron 7 of 11)	intron (NM_001004721, intron 7 of 11)	33065.0	NR_046364	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	42.0	109.0	115.5	35.0	193.5	121.0
Merged-chr1-105866899-4	chr1	105866406	105867406	+	987.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86183.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	1.0	5.5	6.0	2.5	6.5	3.0
Merged-chr14-44091724-4	chr14	44091210	44092210	+	987.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-10944.0	NM_007895	13587.0	Mm.327386	NM_007895	ENSMUSG00000072596	Ear2	EAR-13|EAR-2|ECP|ECP 2|Raf3|Rnase2	eosinophil-associated, ribonuclease A family, member 2	protein-coding	4.5	11.5	19.0	4.5	19.0	20.5
Merged-chr14-55696781-4	chr14	55696306	55697306	+	987.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-14989.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-34231480-2	chr4	34230980	34231980	+	987.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-181413.0	NM_026293	67652.0	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-47378888-4	chr4	47378385	47379385	+	987.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312868, intron 1 of 8)	MTC|LTR|ERVL-MaLR	-7331.0	NM_001312869	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153486978-3	chr1	153486489	153487489	+	987.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007842, intron 1 of 27)	CpG	671.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-140888934-4	chr6	140888418	140889418	+	987.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	262033.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82570871-4	chr11	82570379	82571379	+	987.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62474.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160086564-4	chr2	160086018	160087018	+	987.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69865.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	64.0	102.0	59.0	66.5	114.5	115.5
Merged-chr1-155075187-6	chr1	155074697	155075697	+	987.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151545, intron 3 of 6)	intron (NR_151545, intron 3 of 6)	8067.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155585641-4	chr2	155585151	155586151	+	987.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291111, intron 1 of 11)	MIR|SINE|MIR	7159.0	NM_001291111	14854.0	Mm.252316	NM_008180	ENSMUSG00000027610	Gss	AI314904|GS-A/GS-B|GSH-S	glutathione synthetase	protein-coding	4.0	20.0	27.0	13.0	27.5	20.0
Merged-chr19-12462797-8	chr19	12462322	12463322	+	987.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010821, exon 2 of 2)	exon (NM_010821, exon 2 of 2)	2043.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	186.5	451.5	346.5	212.0	498.5	343.5
Merged-chr5-23435349-7	chr5	23434794	23435794	+	987.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040469)	promoter-TSS (NR_040469)	865.0	NM_026984	69188.0	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	66.5	210.0	122.0	43.5	180.5	124.0
Merged-chr11-82041890-4	chr11	82041395	82042395	+	987.138916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	-3817.0	NM_013654	20306.0	Mm.341574	NM_013654	ENSMUSG00000035373	Ccl7	MCP-3|Scya7|fic|marc|mcp3	chemokine (C-C motif) ligand 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-119058586-7	chr5	119058066	119059066	+	987.127014	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49670.0	NR_040693	73477.0	Mm.410863	NR_040693	ENSMUSG00000100573	1700081H04Rik	-	RIKEN cDNA 1700081H04 gene	ncRNA	52.0	37.5	30.5	12.0	25.5	29.5
Merged-chr11-100441118-4	chr11	100440619	100441619	+	987.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026561)	promoter-TSS (NM_026561)	-30.0	NM_001102650	68106.0	Mm.28738	NM_026561	ENSMUSG00000017176	Nt5c3b	2610037D24Rik|AI841843|C330027I04Rik|Nt5c3l	5'-nucleotidase, cytosolic IIIB	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-22026625-4	chr13	22026179	22027179	+	987.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8964.0	NM_175659	319168.0	Mm.250564	NM_175659	ENSMUSG00000069302	Hist1h2ah	-	histone cluster 1, H2ah	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-43755626-4	chr11	43755122	43756122	+	987.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-7649.0	NM_133795	66827.0	Mm.271974	NM_133795	ENSMUSG00000041278	Ttc1	4833412C19Rik|C79328|TPR1	tetratricopeptide repeat domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12188823-4	chr18	12188311	12189311	+	987.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008720)	TTS (NM_008720)	20081.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	11.0	2.5	11.5	5.5	15.0	5.0
Merged-chr10-17698099-4	chr10	17697600	17698600	+	987.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25128.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-174038698-4	chr1	174038218	174039218	+	987.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-3215.0	NM_146717	258712.0	Mm.223146	NM_146717	ENSMUSG00000045381	Olfr433	MOR123-1	olfactory receptor 433	protein-coding	28.5	68.5	34.0	38.0	48.0	54.5
Merged-chr4-138041743-4	chr4	138041238	138042238	+	987.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	43913.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	43.0	103.5	97.0	30.5	97.0	71.0
Merged-chr18-20694175-4	chr18	20693682	20694682	+	987.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 5 of 8)	intron (NM_019737, intron 5 of 8)	-28922.0	NR_155534	102633478.0		NR_155534	ENSMUSG00000085595	Gm16090	-	predicted gene 16090	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34957022-3	chr7	34956523	34957523	+	987.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 7 of 14)	intron (NM_008820, intron 7 of 14)	44616.0	NM_008820	18624.0	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	0.5	0.5	5.0	0.0	6.0	4.0
Merged-chr10-40301508-4	chr10	40301051	40302051	+	987.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009665, intron 1 of 7)	CpG	635.0	NM_007444	100041585.0	Mm.476925	NM_007444	ENSMUSG00000063953	Amd2	AdoMetDC|Amd1|Amd3	S-adenosylmethionine decarboxylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80731272-4	chr17	80730778	80731778	+	987.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3253.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118768167-4	chr14	118767675	118768675	+	987.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19696.0	NM_001160098	58187.0	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-130818878-4	chr3	130818373	130819373	+	987.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88475.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76948461-4	chr15	76948036	76949036	+	987.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_054099, exon 1 of 4)	5' UTR (NM_054099, exon 1 of 4)	275.0	NM_001347540	117171.0	Mm.322968	NM_054099	ENSMUSG00000063236	1110038F14Rik	-	RIKEN cDNA 1110038F14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8451240-4	chr15	8450742	8451742	+	987.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6779.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100439460-7	chr12	100438947	100439947	+	987.0476070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 5 of 19)	ORR1E|LTR|ERVL-MaLR	81375.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61908651-4	chr8	61908146	61909146	+	987.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5952.0	NM_001293772	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77751315-4	chr9	77750810	77751810	+	987.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3225.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	34.5	94.5	47.5	45.5	61.0	83.0
Merged-chr3-138118570-4	chr3	138118081	138119081	+	987.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355052, intron 7 of 21)	intron (NM_001355052, intron 7 of 21)	13072.0	NM_008642	17777.0	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding	63.0	165.5	123.5	80.0	270.0	174.0
Merged-chr2-167786079-4	chr2	167785596	167786596	+	987.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94919.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-47072743-4	chr7	47072246	47073246	+	987.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10478.0	NR_106023	102465639.0		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-38684662-4	chr5	38684142	38685142	+	987.020874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081144, intron 1 of 3)	CpG	184.0	NM_001177902	100515.0	Mm.38277	NM_001081144	ENSMUSG00000046572	Zfp518b	6820424L24Rik|AA410078|AI661722|Znf518b	zinc finger protein 518B	protein-coding	3.0	0.0	1.0	3.0	6.0	0.5
Merged-chr15-99945127-2	chr15	99944627	99945627	+	987.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13469.0	NM_028180	72277.0	Mm.272766	NM_028180	ENSMUSG00000045350	1700030F18Rik	FAM186A	RIKEN cDNA 1700030F18 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95633528-2	chr3	95633028	95634028	+	987.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	8548.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	34.5	36.5	25.5	12.0	27.5	28.0
Merged-chr2-157850742-2	chr2	157850242	157851242	+	987.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025680, intron 11 of 15)	intron (NM_025680, intron 11 of 15)	-63911.0	NM_198627	277432.0	Mm.441156	NM_198627	ENSMUSG00000037843	Vstm2l	Gm691	V-set and transmembrane domain containing 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35718243-4	chr2	35717801	35718801	+	987.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001602, intron 8 of 13)	intron (NM_001001602, intron 8 of 13)	21569.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135667487-3	chr7	135666978	135667978	+	987.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316681, intron 7 of 17)	intron (NM_001316681, intron 7 of 17)	-15164.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165741841-4	chr1	165741330	165742330	+	987.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21928.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98531038-1	chr7	98530538	98531538	+	987.0	f1_balb.idr	Intergenic	Lx5c|LINE|L1	36816.0	NM_001113379	434215.0	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	2.0	0.0	1.5	0.0	7.0	1.0
Merged-chr17-35090167-3	chr17	35089662	35090662	+	987.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178592, intron 1 of 19)	intron (NM_178592, intron 1 of 19)	871.0	NM_178592	193742.0	Mm.43745	NM_178592	ENSMUSG00000007036	Abhd16a	AI326074|Bat-5|Bat5|D17H6S82E|NG26	abhydrolase domain containing 16A	protein-coding	56.5	135.0	96.0	48.5	139.0	90.0
Merged-chr17-34611748-2	chr17	34611297	34612297	+	987.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163379, exon 6 of 7)	exon (NM_001163379, exon 6 of 7)	2783.0	NM_018862	55979.0	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr18-23802948-2	chr18	23802370	23803370	+	987.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 2 of 7)	intron (NM_001162941, intron 2 of 7)	-1100.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	16.5	26.0	12.0	38.5	32.5	14.0
Merged-chr6-54934066-4	chr6	54933572	54934572	+	987.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171007, intron 8 of 11)	intron (NM_001171007, intron 8 of 11)	37589.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54402323-4	chr12	54401804	54402804	+	987.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10986.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-149387322-1	chr3	149386822	149387822	+	987.0	f1_balb.idr	Intergenic	Intergenic	112585.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.0	2.5	0.0	0.0	0.0	0.0
Merged-chr17-34143662-4	chr17	34143142	34144142	+	987.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1774.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	36.5	84.0	65.0	15.0	108.5	57.5
Merged-chr14-76174519-4	chr14	76173996	76174996	+	987.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63605.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44484098-4	chr13	44483591	44484591	+	987.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	44364.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	14.0	37.5	26.5	3.0	8.5	10.5
Merged-chr1-60181303-2	chr1	60180803	60181803	+	987.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173444, intron 1 of 54)	intron (NM_173444, intron 1 of 54)	704.0	NM_173444	269198.0	Mm.205224	NM_173444	ENSMUSG00000073664	Nbeal1	2310076G13Rik|A530050O19Rik|A530083I02Rik|AI662228|ALS2CR17	neurobeachin like 1	protein-coding	33.5	71.0	51.5	36.5	62.0	91.5
Merged-chr14-30715162-2	chr14	30714659	30715659	+	987.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001166532)	promoter-TSS (NM_001166532)	-8.0	NM_001166531	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	7.5	5.0	19.5	0.0	4.5	5.0
Merged-chr10-94598487-2	chr10	94597987	94598987	+	987.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12288.0	NR_106070	102466817.0		NR_106070	ENSMUSG00000098544	Mir7211	Gm27536|mmu-mir-7211	microRNA 7211	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-92335306-4	chr13	92334791	92335791	+	987.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311120, intron 8 of 23)	intron (NM_001311120, intron 8 of 23)	-19492.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55430828-3	chr1	55430336	55431336	+	987.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	24890.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	14.0	12.0	19.5	40.0	84.0	90.5
Merged-chr13-67109069-1	chr13	67108569	67109569	+	987.0	f1_balb.idr	intron (NM_001256052, intron 2 of 6)	intron (NM_001256052, intron 2 of 6)	4959.0	NM_001256052	432770.0	Mm.124021	NM_001256052	ENSMUSG00000074824	Rslcan18	mszf51	regulator of sex-limitation candidate 18	protein-coding	3.5	26.5	22.0	20.5	36.5	28.5
Merged-chr11-88242010-2	chr11	88241554	88242554	+	987.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	37666.0	NM_001291271	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	1.0	11.5	3.0	7.0	15.0	11.0
Merged-chr15-58249694-2	chr15	58249194	58250194	+	987.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34802.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	26.5	73.5	46.5	31.0	76.0	50.0
Merged-chr7-126826632-2	chr7	126826132	126827132	+	987.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146347, intron 1 of 3)	intron (NM_001146347, intron 1 of 3)	1979.0	NM_001146347	68952.0	Mm.440393	NM_026884	ENSMUSG00000058966	Fam57b	1500016O10Rik|A330104J06Rik|AI413816|AW060769	family with sequence similarity 57, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37514415-2	chr13	37513915	37514915	+	987.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	169070.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	3.5	5.0	15.0	3.0	3.5	4.5
Merged-chr9-65540444-2	chr9	65539944	65540944	+	987.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	39643.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93476220-2	chr10	93475749	93476749	+	987.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008517, intron 14 of 18)	intron (NM_008517, intron 14 of 18)	-12519.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	0.0	7.0	6.5	3.0	5.0	7.5
Merged-chr7-100856440-4	chr7	100855934	100856934	+	987.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177073, intron 1 of 10)	intron (NM_177073, intron 1 of 10)	6979.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126760751-2	chr7	126760251	126761251	+	987.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011952, exon 2 of 9)	exon (NM_011952, exon 2 of 9)	1125.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-77035903-1	chr14	77035403	77036403	+	987.0	f1_balb.idr	promoter-TSS (NM_001310648)	promoter-TSS (NM_001310648)	714.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	127.5	255.5	121.5	48.5	97.0	69.5
Merged-chr19-29253030-4	chr19	29252550	29253550	+	987.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008413, intron 2 of 24)	intron (NM_008413, intron 2 of 24)	1247.0	NM_008413	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101450584-4	chr7	101450077	101451077	+	986.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001143849)	promoter-TSS (NM_001143849)	57.0	NM_001243758	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	0.0	0.5	0.0	7.0	7.0	1.0
Merged-chr11-69931162-4	chr11	69930650	69931650	+	986.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4749.0	NM_016875	53422.0	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118588246-4	chr10	118587759	118588759	+	986.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31734.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75978203-4	chr2	75977705	75978705	+	986.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081228)	promoter-TSS (NM_001081228)	-26.0	NM_001081228	620631.0	Mm.389286	NM_001081228	ENSMUSG00000075272	Ttc30a2	-	tetratricopeptide repeat domain 30A2	protein-coding	4.5	5.5	0.5	0.0	6.0	4.5
Merged-chr9-109118271-4	chr9	109117786	109118786	+	986.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172775, exon 38 of 38)	3' UTR (NM_172775, exon 38 of 38)	22850.0	NM_172775	235611.0	Mm.53862	NM_172775	ENSMUSG00000053646	Plxnb1	2900002G15Rik|AU042020|mKIAA0407	plexin B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-17569467-4	chr14	17568974	17569974	+	986.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91486.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-9411971-4	chr14	9411477	9412477	+	986.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-472118.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0.5	13.5	1.0	6.0	11.0	2.0
Merged-chr10-59268258-4	chr10	59267751	59268751	+	986.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	46329.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-113932235-4	chr9	113931730	113932730	+	986.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013699, intron 2 of 15)	intron (NM_013699, intron 2 of 15)	1296.0	NM_013699	22221.0	Mm.28052	NM_013699	ENSMUSG00000009741	Ubp1	Cp2b|LBP-1a|LBP-1b|NF2d9	upstream binding protein 1	protein-coding	11.0	21.0	27.0	23.0	19.0	41.5
Merged-chr7-96546876-3	chr7	96546406	96547406	+	986.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310762, intron 4 of 32)	intron (NM_001310762, intron 4 of 32)	-204942.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	8.0	13.0	7.5	35.0	45.5	42.5
Merged-chr7-141219436-4	chr7	141218925	141219925	+	986.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025886)	TTS (NM_025886)	2068.0	NR_029793	387206.0		NR_029793	ENSMUSG00000065551	Mir210	Mirn210|mir-210|mmu-mir-210	microRNA 210	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8802384-4	chr17	8801877	8802877	+	986.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011866, intron 1 of 21)	CpG	632.0	NM_011866	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	2.0	7.5	3.0	3.5	14.5	1.5
Merged-chr11-97280523-5	chr11	97280037	97281037	+	986.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008942)	promoter-TSS (NM_008942)	39.0	NM_008942	19155.0	Mm.29824	NM_008942	ENSMUSG00000001441	Npepps	AAP-S|MP100|Psa|R74825|goku	aminopeptidase puromycin sensitive	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-41566171-4	chr3	41565648	41566648	+	986.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130186, intron 1 of 10)	CpG	1268.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	1.5	0.0	4.5	0.0	9.0	5.0
Merged-chr18-65632108-4	chr18	65631602	65632602	+	986.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207255, intron 3 of 5)	intron (NM_207255, intron 3 of 5)	-12487.0	NR_105742	100526497.0		NR_105742	ENSMUSG00000077113	Mir466p	mmu-mir-466p	microRNA 466p	ncRNA	7.0	10.0	2.0	10.0	9.5	3.5
Merged-chr10-13501920-2	chr10	13501420	13502420	+	986.9166869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_025799, intron 1 of 6)	ORR1A2|LTR|ERVL-MaLR	892.0	NM_025799	66848.0	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-101924455-4	chr3	101923952	101924952	+	986.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039371)	promoter-TSS (NM_001039371)	1.0	NM_001039371	242126.0	Mm.90204	NM_001039371	ENSMUSG00000033147	Slc22a15	2610034P21Rik|4930477M19|A530052I06Rik|BB219042	solute carrier family 22 (organic anion/cation transporter), member 15	protein-coding	1.0	1.5	0.0	0.0	4.0	1.0
Merged-chr11-118479755-5	chr11	118479274	118480274	+	986.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153103, intron 3 of 13)	B1_Mus2|SINE|Alu	2942.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-63023301-3	chr10	63022794	63023794	+	986.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079824, intron 1 of 9)	CpG	555.0	NM_001079824	432467.0	Mm.274784	NM_001079824	ENSMUSG00000020069	Hnrnph3	AA693301|AI666703|Hnrph3	heterogeneous nuclear ribonucleoprotein H3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60289733-3	chr2	60289274	60290274	+	986.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5290.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103777582-3	chr14	103777081	103778081	+	986.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66120.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-48550725-4	chr13	48550211	48551211	+	986.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12439.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24069147-4	chr5	24068637	24069637	+	986.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31453.0	NM_026448	52323.0	Mm.273768	NM_026448	ENSMUSG00000028986	Klhl7	2700038B03Rik|D5Ertd363e|SBBI26	kelch-like 7	protein-coding	10.5	10.5	28.5	8.5	5.5	7.0
Merged-chr1-192932040-4	chr1	192931540	192932540	+	986.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301370, intron 5 of 8)	intron (NM_001301370, intron 5 of 8)	-76288.0	NM_198247	214791.0	Mm.22806	NM_198247	ENSMUSG00000016262	Sertad4	4833404A09|C130018M11Rik	SERTA domain containing 4	protein-coding	3.0	10.0	10.5	4.5	11.5	5.0
Merged-chr3-87906788-4	chr3	87906289	87907289	+	986.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331052)	promoter-TSS (NM_001331052)	-61.0	NM_001331051	15191.0	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-119933444-4	chr3	119932936	119933936	+	986.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-150048.0	NM_019550	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	0.0	17.0	11.0	5.0	9.0	3.5
Merged-chr9-23594826-4	chr9	23594325	23595325	+	986.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TAAA)n|Simple_repeat|Simple_repeat	371749.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152613836-4	chr1	152613310	152614310	+	986.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	11407.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-114610135-2	chr2	114609635	114610635	+	986.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025675, intron 3 of 8)	intron (NM_025675, intron 3 of 8)	44829.0	NM_001356438	66632.0	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41261838-2	chr10	41261338	41262338	+	986.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133999, intron 10 of 22)	intron (NM_133999, intron 10 of 22)	41403.0	NM_133999	103199.0	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3649022-4	chr8	3648528	3649528	+	986.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6742.0	NM_001204959	57264.0	Mm.1181	NM_022984	ENSMUSG00000012705	Retn	ADSF|Fizz3|Rstn|Xcp4	resistin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97394692-4	chr6	97394194	97395194	+	986.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	L1MEc|LINE|L1	64592.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72195635-4	chr5	72195138	72196138	+	986.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-7691.0	NR_003966	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29318766-3	chr17	29318269	29319269	+	986.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023734)	promoter-TSS (NM_023734)	-113.0	NM_023734	74116.0	Mm.30950	NM_023734	ENSMUSG00000024011	Pi16	1200009H11Rik|Cripi|PI-16	peptidase inhibitor 16	protein-coding	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr11-114653857-4	chr11	114653355	114654355	+	986.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14688.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-148914078-4	chr6	148913547	148914547	+	986.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17810.0	NM_181541	232560.0	Mm.150568	NM_181541	ENSMUSG00000030309	Caprin2	C1qdc1|Eeg1|rng140	caprin family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-56412210-4	chr8	56411700	56412700	+	986.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72768.0	NR_131020	75123.0	Mm.72666	NR_131020	ENSMUSG00000110310	4930518J21Rik	-	RIKEN cDNA 4930518J21 gene	ncRNA	9.0	0.5	6.5	6.0	4.5	3.0
Merged-chr9-32541417-4	chr9	32540944	32541944	+	986.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008026)	promoter-TSS (NM_008026)	8.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134785100-4	chr1	134784584	134785584	+	986.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081307, intron 18 of 23)	intron (NM_001081307, intron 18 of 23)	18637.0	NR_015606	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94711513-4	chr8	94711023	94712023	+	986.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15281.0	NM_026385	67801.0	Mm.279977	NM_026385	ENSMUSG00000031775	Pllp	0610010I06Rik|AV001002|Plapi|Tm4sf11	plasma membrane proteolipid	protein-coding	2.5	2.0	6.0	4.0	4.0	4.0
Merged-chr12-118296401-4	chr12	118295895	118296895	+	986.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166385, intron 3 of 5)	ID_B1|SINE|B4	5045.0	NM_009239	20688.0	Mm.34699	NM_009239	ENSMUSG00000025323	Sp4	5730497N03Rik|HF-1b|HF1-b	trans-acting transcription factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171270316-4	chr1	171269813	171270813	+	986.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020579)	promoter-TSS (NM_020579)	-15.0	NM_020579	57370.0	Mm.274011	NM_020579	ENSMUSG00000052423	B4galt3	9530061M23Rik|AA104562|AW125175|ESTM26|ESTM6|R74981	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	protein-coding	18.0	34.5	23.0	5.5	8.0	7.5
Merged-chr12-36380408-4	chr12	36379889	36380889	+	986.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1061.0	NM_001289504	75847.0	Mm.261764	NM_178629	ENSMUSG00000043153	Ispd	4930579E17Rik|AV040780	isoprenoid synthase domain containing	protein-coding	23.5	92.5	83.5	18.5	89.5	49.0
Merged-chr2-48975210-4	chr2	48974699	48975699	+	986.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029924, intron 1 of 16)	intron (NM_029924, intron 1 of 16)	-24965.0	NM_001355296	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74826343-4	chr11	74825826	74826826	+	986.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4598.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	38.0	110.5	85.5	61.0	204.0	167.5
Merged-chr1-170996995-4	chr1	170996504	170997504	+	986.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20933.0	NM_001077189	14130.0	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129276678-4	chr6	129276198	129277198	+	986.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1329.0	NM_001033122	12515.0	Mm.74745	NM_001033122	ENSMUSG00000030156	Cd69	5830438K24Rik|AI452015|AIM|VEA	CD69 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118490841-4	chr2	118490321	118491321	+	986.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11125.0	NM_009273	20813.0	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	29.0	36.5	23.5	5.5	13.5	15.5
Merged-chr3-31342754-4	chr3	31342256	31343256	+	986.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32437.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45251446-4	chr9	45250933	45251933	+	986.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15274.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27741595-2	chr2	27741095	27742095	+	986.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 3 of 9)	intron (NM_001290481, intron 3 of 9)	31012.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41571234-4	chr10	41570741	41571741	+	986.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 36 of 47)	intron (NM_001358562, intron 36 of 47)	3225.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43005907-4	chr4	43005394	43006394	+	986.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053081, intron 8 of 13)	intron (NM_053081, intron 8 of 13)	4407.0	NM_001163233	60534.0	Mm.23122	NM_053081	ENSMUSG00000028453	Fancg	AU041407|Xrcc9	Fanconi anemia, complementation group G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86082972-2	chr12	86082472	86083472	+	986.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_029601, intron 1 of 7)	intron (NM_029601, intron 1 of 7)	411.0	NM_001199843	76411.0	Mm.292345	NM_029601	ENSMUSG00000007867	Ift43	1700019E19Rik|R75064	intraflagellar transport 43	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12626252-4	chr13	12625761	12626761	+	986.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003568, intron 2 of 6)	intron (NR_003568, intron 2 of 6)	24134.0	NR_003568	664862.0	Mm.415635	NR_003568		Gpr137b-ps	2310041G17Rik	G protein-coupled receptor 137B, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3933613-2	chr19	3933113	3934113	+	986.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1573.0	NM_019449	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73681940-4	chr12	73681416	73682416	+	986.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	97120.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-94278816-4	chr9	94278302	94279302	+	986.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	259279.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77464698-2	chr11	77464198	77465198	+	986.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_139129, intron 1 of 8)	intron (NM_139129, intron 1 of 8)	785.0	NM_139130	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-61180388-3	chr6	61179911	61180911	+	986.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164316)	promoter-TSS (NM_001164316)	86.0	NM_183310	232035.0	Mm.150324	NM_183310	ENSMUSG00000039578	Ccser1	6230405M12Rik|C130092O11Rik|Fam190a	coiled-coil serine rich 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114542322-3	chr11	114541820	114542820	+	986.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93460.0	NR_027643	319819.0	Mm.50754	NM_177008	ENSMUSG00000062391	4932435O22Rik	-	RIKEN cDNA 4932435O22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50545683-7	chr6	50545195	50546195	+	986.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20779.0	NM_007808	13063.0	Mm.35389	NM_007808	ENSMUSG00000063694	Cycs	-	cytochrome c, somatic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-79394736-4	chr14	79394242	79395242	+	986.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3030.0	NM_145960	211253.0	Mm.35306	NM_145960	ENSMUSG00000022022	Mtrf1	A830062K05Rik|MtRF-1	mitochondrial translational release factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80479845-4	chr17	80479334	80480334	+	986.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009231, intron 1 of 21)	CpG	619.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85519748-4	chr12	85519253	85520253	+	986.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45863.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121791642-4	chr11	121791132	121792132	+	986.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38586.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-48749402-4	chr7	48748924	48749924	+	986.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39579.0	NM_028031	243983.0	Mm.279116	NM_028031	ENSMUSG00000030471	Zdhhc13	2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4	zinc finger, DHHC domain containing 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-70099220-4	chr7	70098724	70099724	+	986.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	238598.0	NR_131145	624549.0	Mm.116344	NR_131144	ENSMUSG00000109097	Gm29683	Gm44536	predicted gene, 29683	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-124121520-4	chr9	124121004	124122004	+	986.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009917)	promoter-TSS (NM_009917)	-39.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156921770-4	chr1	156921299	156922299	+	986.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357391, intron 1 of 19)	intron (NM_001357391, intron 1 of 19)	17588.0	NM_001159966	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	11.0	31.5	10.5	10.5	23.0	10.0
Merged-chr7-90211090-2	chr7	90210583	90211583	+	986.7000119999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	54349.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	0.0	0.5	3.0	3.0	0.0	2.5
Merged-chr14-19968906-4	chr14	19968405	19969405	+	986.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285908, intron 1 of 3)	B1F|SINE|Alu	7788.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59229959-4	chr11	59229455	59230455	+	986.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1688.0	NM_007476	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	9.5	43.5	42.0	38.5	44.5	22.5
Merged-chr4-147437273-2	chr4	147436773	147437773	+	986.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	Lx3_Mus|LINE|L1	-116004.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86654696-4	chr6	86654183	86655183	+	986.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010751, intron 3 of 5)	intron (NM_010751, intron 3 of 5)	14476.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	0.0	4.5	4.5	5.5	0.0	5.0
Merged-chr1-161077383-3	chr1	161076856	161077856	+	986.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131030, intron 2 of 4)	ORR1A3|LTR|ERVL-MaLR	6589.0	NR_131029	70454.0	Mm.248212	NM_027429	ENSMUSG00000026708	Cenpl	2610300B10Rik|AW121806|AW550697|CENP-L	centromere protein L	protein-coding	8.0	49.5	45.5	28.5	54.5	29.0
Merged-chr19-11604819-4	chr19	11604322	11605322	+	986.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026835)	promoter-TSS (NM_026835)	-18.0	NM_026835	68774.0	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	20.0	29.0	37.0	36.5	18.5	55.5
Merged-chr15-37305550-4	chr15	37305050	37306050	+	986.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026496, intron 7 of 15)	intron (NM_026496, intron 7 of 15)	-72391.0	NR_155442	105245924.0	Mm.391911	NR_155441	ENSMUSG00000089804	Gm16136	-	predicted gene 16136	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117483122-4	chr11	117482630	117483630	+	986.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1238.0	NR_130966	432615.0	Mm.126359	NR_130966	ENSMUSG00000069588	Gm11733	-	predicted gene 11733	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35867175-4	chr17	35866673	35867673	+	986.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175242, exon 1 of 3)	5' UTR (NM_175242, exon 1 of 3)	558.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	35.5	45.5	43.0	27.5	97.0	38.0
Merged-chr9-120011742-4	chr9	120011218	120012218	+	986.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	11880.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	0.0	13.0	6.0	3.0	7.5	2.0
Merged-chr10-123085491-4	chr10	123084986	123085986	+	986.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8981.0	NM_001163025	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	21.0	36.5	24.0	2.0	7.0	11.5
Merged-chr7-43985821-4	chr7	43985344	43986344	+	986.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9783.0	NM_010116	13648.0	Mm.440884	NM_010116	ENSMUSG00000059042	Klk1b9	EGF-BP C|Egfbp-3|Egfbp3|KAL|Klk9|kallikrein|mGk-9	kallikrein 1-related peptidase b9	protein-coding	3.5	3.0	3.5	3.5	3.0	3.5
Merged-chr11-109480622-3	chr11	109480116	109481116	+	986.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028710, intron 1 of 13)	intron (NM_028710, intron 1 of 13)	-5276.0	NM_001361975	74008.0	Mm.482224	NM_028710	ENSMUSG00000020604	Arsg	6330406P08Rik|AI846872|ASG	arylsulfatase G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40094982-4	chr10	40094453	40095453	+	986.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	B3A|SINE|B2	47301.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103309058-2	chr15	103308558	103309558	+	986.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_030720, exon 2 of 2)	exon (NM_030720, exon 2 of 2)	1380.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58486803-2	chr13	58486303	58487303	+	986.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83460.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-144299350-4	chr1	144298830	144299830	+	986.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER67B|LTR|ERV1	-50226.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94162681-4	chr13	94162175	94163175	+	986.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 2 of 3)	MTD|LTR|ERVL-MaLR	104879.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-14684940-4	chr14	14684437	14685437	+	986.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18088.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	13.0	28.0	12.5	14.0	30.5	18.5
Merged-chr10-63424644-4	chr10	63424138	63425138	+	986.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-5460.0	NM_177612	216033.0	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112427627-4	chr13	112427128	112428128	+	986.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-36442.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67629072-4	chr10	67628569	67629569	+	986.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57110.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31342176-4	chr15	31341661	31342661	+	986.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027496, intron 1 of 3)	intron (NM_027496, intron 1 of 3)	25598.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-41552973-3	chr3	41552473	41553473	+	986.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2761.0	NM_001130184	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	1.0	2.5	0.5	3.0	3.0	1.5
Merged-chr2-91508610-4	chr2	91508108	91509108	+	986.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172668, exon 37 of 38)	exon (NM_172668, exon 37 of 38)	-18154.0	NM_001165989	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	10.0	41.0	25.5	29.5	26.0	11.5
Merged-chr8-71558430-2	chr8	71557928	71558928	+	986.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001100462, intron 1 of 3)	intron (NM_001100462, intron 1 of 3)	443.0	NM_001100462	434325.0	Mm.33613	NM_001100462	ENSMUSG00000043664	Tmem221	-	transmembrane protein 221	protein-coding	21.0	39.5	44.0	16.0	39.0	15.0
Merged-chr15-74926920-5	chr15	74926509	74927509	+	986.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER31A|LTR|ERV1	-28042.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	27.0	46.0	40.0	20.0	42.0	39.5
Merged-chr7-35051696-4	chr7	35051210	35052210	+	986.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009884, intron 1 of 1)	intron (NM_009884, intron 1 of 1)	4856.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6306558-8	chr19	6306027	6307027	+	986.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033342)	promoter-TSS (NM_001033342)	70.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65699327-4	chr18	65698824	65699824	+	986.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177028, intron 1 of 14)	intron (NM_177028, intron 1 of 14)	1056.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	3.0	21.0	6.5	19.5	34.0	6.5
Merged-chr13-91224662-4	chr13	91224189	91225189	+	986.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025770)	promoter-TSS (NM_025770)	-702.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-59316856-4	chr1	59316326	59317326	+	986.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356389, intron 10 of 13)	intron (NM_001356389, intron 10 of 13)	59920.0	NM_001356389	271697.0	Mm.297713	NM_001033373	ENSMUSG00000026023	Cdk15	Als2cr7|Pftk2	cyclin-dependent kinase 15	protein-coding	10.0	0.0	0.0	0.0	1.0	0.0
Merged-chr8-34816322-4	chr8	34815826	34816826	+	986.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176933, intron 1 of 3)	intron (NM_176933, intron 1 of 3)	8716.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	2.5	6.5	2.0	4.0	4.5	0.5
Merged-chr14-30581417-3	chr14	30580869	30581869	+	986.5833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9220.0	NR_037237	100526475.0		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	66.0	61.5	48.0	0.0	1.5	4.0
Merged-chr9-40392558-4	chr9	40392021	40393021	+	986.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 2 of 20)	intron (NM_001357617, intron 2 of 20)	-16104.0	NM_001357621	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97415682-4	chr15	97415164	97416164	+	986.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-168377.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43180625-4	chr5	43180115	43181115	+	986.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 5 of 7)	intron (NR_028417, intron 5 of 7)	-52848.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	17.5	6.5	18.0	16.0	2.5	13.0
Merged-chr1-85896906-4	chr1	85896415	85897415	+	986.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022417, intron 1 of 5)	intron (NM_022417, intron 1 of 5)	2405.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132813152-4	chr7	132812635	132813635	+	986.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_212473)	promoter-TSS (NM_212473)	61.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93309785-4	chr10	93309300	93310300	+	986.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001322265, intron 1 of 4)	intron (NM_001322265, intron 1 of 4)	1359.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	5.0	2.0	19.0	34.0	94.0	71.0
Merged-chr1-189922352-4	chr1	189921860	189922860	+	986.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026796)	promoter-TSS (NM_026796)	-69.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	0.0	5.0	5.0	0.0	5.5	3.0
Merged-chr19-56724608-4	chr19	56724082	56725082	+	986.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007419, exon 1 of 1)	3' UTR (NM_007419, exon 1 of 1)	2210.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	15.5	33.5	19.5	3.0	10.0	4.0
Merged-chr9-64173506-4	chr9	64172996	64173996	+	986.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026507)	promoter-TSS (NM_026507)	109.0	NM_024212	67891.0	Mm.280083	NM_024212	ENSMUSG00000032399	Rpl4	2010004J23Rik	ribosomal protein L4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97361868-2	chr6	97361368	97362368	+	986.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	intron (NM_145148, intron 6 of 23)	97418.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	8.5	6.5	0.0	8.5	5.5
Merged-chr2-167320559-2	chr2	167320059	167321059	+	986.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	28619.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43514970-2	chr4	43514470	43515470	+	986.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009416, exon 9 of 9)	3' UTR (NM_009416, exon 9 of 9)	-6223.0	NM_001013377	230098.0	Mm.331567	NM_001013377	ENSMUSG00000051517	Arhgef39	E130306D19Rik	Rho guanine nucleotide exchange factor (GEF) 39	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr14-79564390-2	chr14	79563890	79564890	+	986.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286412, intron 3 of 7)	PB1D7|SINE|Alu	-23270.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-80661900-4	chr1	80661457	80662457	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	3395.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61330936-4	chr9	61330443	61331443	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37134.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157071760-3	chr2	157071269	157072269	+	986.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	7496.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66088682-2	chr9	66088182	66089182	+	986.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019727, intron 14 of 14)	intron (NM_019727, intron 14 of 14)	-18951.0	NM_001025612	382083.0	Mm.477103	NM_001025612	ENSMUSG00000039452	Snx22	Gm1120	sorting nexin 22	protein-coding	1.0	1.0	3.0	0.5	3.5	8.0
Merged-chr7-92746344-2	chr7	92745844	92746844	+	986.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029494, intron 1 of 4)	intron (NM_029494, intron 1 of 4)	4630.0	NM_029494	75985.0	Mm.323004	NM_029494	ENSMUSG00000030643	Rab30	5033421K01Rik|AI323892|Rsb30	RAB30, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84201435-4	chr12	84200921	84201921	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	-7406.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64210917-4	chr5	64210378	64211378	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	RSINE1|SINE|B4	-19479.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-52280647-2	chr14	52280147	52281147	+	986.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023434, intron 3 of 9)	URR1B|DNA|hAT-Charlie	-1252.0	NM_172601	76338.0	Mm.32870	NM_172601	ENSMUSG00000022159	Rab2b	1500012D09Rik|4930528G15Rik|A230002G14|D530043M21Rik	RAB2B, member RAS oncogene family	protein-coding	28.5	39.0	42.5	28.5	38.0	44.0
Merged-chr12-54985801-4	chr12	54985308	54986308	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013815, intron 1 of 26)	CpG-3178	528.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-12090378-4	chr16	12089938	12090938	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028277, intron 2 of 4)	intron (NM_028277, intron 2 of 4)	106325.0	NM_001174086	72555.0	Mm.310139	NM_028277	ENSMUSG00000022494	Shisa9	2700045P11Rik|Ckamp44	shisa family member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120043328-4	chr9	120042823	120043823	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19725.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-193860418-2	chr1	193859918	193860918	+	986.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR85c|LTR|Gypsy?	-352888.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145257257-2	chr7	145256710	145257710	+	986.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_132642, exon 19 of 24)	non-coding (NR_132642, exon 19 of 24)	26801.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	3.0	0.0	4.0	5.0	1.5	1.0
Merged-chr8-71470598-2	chr8	71470098	71471098	+	986.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001294259, intron 1 of 3)	intron (NM_001294259, intron 1 of 3)	1404.0	NR_122114	66498.0	Mm.260360	NM_025600	ENSMUSG00000074247	Dda1	1500034J01Rik|1700095J19Rik|R74921	DET1 and DDB1 associated 1	protein-coding	2.0	14.5	0.0	1.0	12.0	3.0
Merged-chr15-8168416-2	chr15	8167916	8168916	+	986.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162906)	promoter-TSS (NM_001162906)	-690.0	NM_001162906	73692.0	Mm.164436	NM_001162906	ENSMUSG00000039801	2410089E03Rik	4732468D17Rik|Hug|Jbts17|b2b012Clo	RIKEN cDNA 2410089E03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-142076593-2	chr4	142076093	142077093	+	986.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-7705.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71486168-8	chr17	71485641	71486641	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10798.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	81.5	211.0	139.0	67.0	155.5	143.5
Merged-chr2-150922355-4	chr2	150921849	150922849	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027014, intron 4 of 6)	Lx9|LINE|L1	12755.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-112367937-4	chr2	112367408	112368408	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026519, exon 1 of 5)	5' UTR (NM_026519, exon 1 of 5)	119.0	NM_026519	68032.0	Mm.220942	NM_026519	ENSMUSG00000027131	Emc4	2610318K02Rik|Tmem85	ER membrane protein complex subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50130911-4	chr11	50130406	50131406	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290759)	promoter-TSS (NM_001290759)	-454.0	NM_001290759	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34792176-4	chr13	34791648	34792648	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52506.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32115371-4	chr16	32114856	32115856	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15554.0	NM_025892	66994.0	Mm.22990	NM_025892	ENSMUSG00000035790	Cep19	1500031L02Rik|AI428934|AL022620	centrosomal protein 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-69987771-4	chr9	69987268	69988268	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1698.0	NM_016787	12175.0	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11187371-4	chr2	11186887	11187887	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	15005.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87418903-2	chr1	87418403	87419403	+	986.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146112, intron 15 of 28)	intron (NM_146112, intron 15 of 28)	-24174.0	NM_001110227	100040591.0	Mm.443539	NM_001110227	ENSMUSG00000079436	Kcnj13	-	potassium inwardly-rectifying channel, subfamily J, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11188210-2	chr8	11187710	11188710	+	986.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-124595.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-13377452-2	chr13	13376952	13377952	+	986.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031999, intron 1 of 6)	intron (NM_031999, intron 1 of 6)	16172.0	NM_031999	83924.0	Mm.379269	NM_031999	ENSMUSG00000021306	Gpr137b	AI788917|AU016435|AW546472|C730041E01|C80550|C80741|D13Abb1e|Tm7sf1	G protein-coupled receptor 137B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8663002-2	chr3	8662502	8663502	+	986.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010423)	TTS (NM_010423)	4036.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-93963210-4	chr11	93962687	93963687	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008704, intron 3 of 4)	intron (NM_008704, intron 3 of 4)	5334.0	NM_008704	18102.0	Mm.439702	NM_008704	ENSMUSG00000037601	Nme1	AL024257|NDPK-A|NM23-M1|NM23A	NME/NM23 nucleoside diphosphate kinase 1	protein-coding	6.0	10.0	9.0	2.5	15.0	2.0
Merged-chr6-15845499-2	chr6	15844999	15845999	+	986.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	124838.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180251814-2	chr2	180251314	180252314	+	986.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5565.0	NM_025587	66481.0	Mm.289669	NM_025587	ENSMUSG00000039001	Rps21	1810049N11Rik|2410030A14Rik	ribosomal protein S21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-126928344-3	chr10	126927844	126928844	+	986.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-26973.0	NM_001358970	68876.0	Mm.276769	NM_026858	ENSMUSG00000025436	Atp23	1110068E08Rik|2410012H02Rik|Xrcc6bp1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24732500-2	chr17	24732000	24733000	+	986.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025425)	promoter-TSS (NM_025425)	-185.0	NM_025425	66211.0	Mm.46198	NM_025425	ENSMUSG00000002500	Rpl3l	1110057H16Rik	ribosomal protein L3-like	protein-coding	2.5	3.0	5.0	2.5	3.0	2.0
Merged-chr14-66848878-4	chr14	66848384	66849384	+	986.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009955, intron 3 of 13)	intron (NM_009955, intron 3 of 13)	19716.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	1.0	9.0	9.5	2.0	5.0	5.5
Merged-chr10-89444411-4	chr10	89443909	89444909	+	986.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284344)	promoter-TSS (NM_001284344)	-442.0	NM_001033331	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	6.0	15.5	19.5	17.5	16.5	17.0
Merged-chr4-108327184-4	chr4	108326749	108327749	+	986.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027250)	promoter-TSS (NM_027250)	-903.0	NM_027250	69893.0	Mm.28354	NM_027250	ENSMUSG00000048351	Coa7	2010305A19Rik|AI451324|D4Ertd796e|Selrc1	cytochrome c oxidase assembly factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22130663-4	chr9	22130179	22131179	+	986.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007388)	promoter-TSS (NM_007388)	-81.0	NM_007388	11433.0	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-91302331-4	chr5	91301809	91302809	+	986.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-19233.0	NR_040428	100503265.0	Mm.125059	NR_040428	ENSMUSG00000107198	Gm19619	-	predicted gene, 19619	ncRNA	0.0	6.5	0.0	0.0	2.5	0.0
Merged-chr6-116123041-4	chr6	116122520	116123520	+	986.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	MERVL_2A-int|LTR|ERVL	70354.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87622022-4	chr1	87621501	87622501	+	986.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	1689.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44457344-4	chr10	44456818	44457818	+	986.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007548, intron 1 of 6)	intron (NM_007548, intron 1 of 6)	1430.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-97769371-6	chr1	97768885	97769885	+	986.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026250)	promoter-TSS (NM_026250)	707.0	NM_173760	227399.0	Mm.220817	NM_173760	ENSMUSG00000040648	Ppip5k2	AW555814|Cfap160|D330021B20|Hisppd1|Vip2|mKIAA0433	diphosphoinositol pentakisphosphate kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109027300-3	chr3	109026807	109027807	+	986.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163567, exon 1 of 11)	exon (NM_001163567, exon 1 of 11)	300.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	52.5	72.0	92.0	30.5	54.0	31.0
Merged-chr11-77786413-4	chr11	77785850	77786850	+	986.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011586, intron 1 of 39)	intron (NM_011586, intron 1 of 39)	9115.0	NM_001291212	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-8638185-4	chr18	8637683	8638683	+	986.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-574673.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	4.5	27.0	13.0	2.0	7.0	1.5
Merged-chr2-162939812-4	chr2	162939321	162940321	+	986.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3644.0	NM_001081338	241764.0	Mm.187086	NM_001081338	ENSMUSG00000035576	L3mbtl1	C630004G01|L3mbtl|mKIAA0681	L3MBTL1 histone methyl-lysine binding protein	protein-coding	3.5	9.5	10.0	5.5	0.5	9.5
Merged-chr10-80420823-4	chr10	80420348	80421348	+	986.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164153, intron 5 of 18)	intron (NM_001164153, intron 5 of 18)	12805.0	NM_001164150	21423.0	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-70568828-3	chr16	70568340	70569340	+	986.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 15 of 15)	intron (NM_028803, intron 15 of 15)	-47585.0	NR_040474	52645.0	Mm.188475	NR_040474		D16Ertd519e	-	DNA segment, Chr 16, ERATO Doi 519, expressed	ncRNA	0.0	6.0	0.0	0.0	7.0	1.0
Merged-chr1-171233538-4	chr1	171233037	171234037	+	986.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010185, intron 1 of 4)	intron (NM_010185, intron 1 of 4)	812.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	59.0	198.5	123.0	46.5	136.0	73.5
Merged-chr15-96712226-4	chr15	96711700	96712700	+	986.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12472.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-45699052-4	chr11	45698544	45699544	+	986.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A2|LTR|ERVL	-109039.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120537289-4	chr8	120536798	120537798	+	986.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145896)	promoter-TSS (NM_001145896)	-111.0	NM_001145896	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	31.5	22.5	7.5	6.5	21.5	14.0
Merged-chr11-115066019-2	chr11	115065519	115066519	+	986.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3980.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	5.0	18.0	13.5	5.0	14.0	7.0
Merged-chr4-66828868-4	chr4	66828378	66829378	+	986.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021297, intron 1 of 2)	intron (NM_021297, intron 1 of 2)	1327.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	42.5	101.0	77.0	26.0	137.0	77.5
Merged-chr8-117454492-4	chr8	117454079	117455079	+	986.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 17 of 20)	intron (NM_028941, intron 17 of 20)	1556.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110416626-6	chr5	110416076	110417076	+	986.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142642, intron 3 of 18)	(TG)n|Simple_repeat|Simple_repeat	-29449.0	NM_028596	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	0.0	2.0	0.0	0.0	2.0	1.5
Merged-chr11-69055925-2	chr11	69055425	69056425	+	986.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3850.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	3.5	3.5	7.5	3.5	3.5	7.5
Merged-chr4-155201726-2	chr4	155201226	155202226	+	986.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	20809.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	10.5	37.5	22.0	3.5	21.5	10.5
Merged-chr18-82917700-4	chr18	82917194	82918194	+	986.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_033307)	TTS (NR_033307)	2866.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106562959-4	chr11	106562447	106563447	+	986.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198292, intron 2 of 11)	MTEb|LTR|ERVL-MaLR	49983.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-40435246-3	chr6	40434829	40435829	+	986.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356375, intron 1 of 8)	CpG	806.0	NM_001356375	243780.0	Mm.333006	NM_175528	ENSMUSG00000037172	E330009J07Rik	AI841796|Lchn|mKIAA1147	RIKEN cDNA E330009J07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37872269-4	chr1	37871741	37872741	+	986.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037918)	promoter-TSS (NM_001037918)	35.0	NM_001037918	623661.0	Mm.138000	NM_001037918	ENSMUSG00000037216	Lipt1	EG623661	lipoyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-30088625-4	chr18	30088117	30089117	+	986.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-184248.0	NM_181414	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-78560305-4	chr16	78559801	78560801	+	986.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040569)	promoter-TSS (NR_040569)	-15.0	NR_040569	75818.0	Mm.410817	NR_040569		4930478L05Rik	-	RIKEN cDNA 4930478L05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4419904-4	chr16	4419320	4420320	+	986.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001291910, exon 1 of 12)	5' UTR (NM_001291910, exon 1 of 12)	678.0	NM_001291910	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149701596-4	chr4	149701124	149702124	+	986.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029837)	promoter-TSS (NM_001029837)	5.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	136.5	262.0	232.5	125.0	375.5	200.0
Merged-chr3-108286404-3	chr3	108285903	108286903	+	986.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019972, intron 1 of 19)	intron (NM_019972, intron 1 of 19)	2339.0	NM_019972	20661.0	Mm.157119	NM_019972	ENSMUSG00000068747	Sort1	2900053A11Rik|AI852375|Ntr3|Ntsr3	sortilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181365992-3	chr2	181365511	181366511	+	986.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165991)	promoter-TSS (NM_001165991)	588.0	NM_001048148	229007.0	Mm.87720	NM_144894	ENSMUSG00000027582	Zgpat	1500006I01Rik|BC021513	zinc finger, CCCH-type with G patch domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-92985083-7	chr7	92984567	92985567	+	986.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94812.0	NM_021427	58238.0	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-131293265-4	chr6	131292724	131293724	+	986.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025564)	promoter-TSS (NM_025564)	20.0	NM_001327860	66441.0	Mm.46623	NM_025564	ENSMUSG00000030188	Magohb	2010012C16Rik|Mago|Magoh|Magoh-rs1	mago homolog B, exon junction complex core component	protein-coding	102.0	213.5	157.0	59.0	130.0	133.5
Merged-chr7-140954867-4	chr7	140954360	140955360	+	986.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030694)	TTS (NM_030694)	1101.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-32913248-4	chr13	32912765	32913765	+	986.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15125.0	NM_173051	380839.0	Mm.250802	NM_173051	ENSMUSG00000079049	Serpinb1c	EIC|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1c	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106255969-6	chr11	106255475	106256475	+	986.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008950)	promoter-TSS (NM_008950)	109.0	NM_025310	56095.0	Mm.29795	NM_025310	ENSMUSG00000020706	Ftsj3	AA537063|AU045295|C79843|D11Ertd400e|Epcs3	FtsJ RNA methyltransferase homolog 3 (E. coli)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-47319664-4	chr4	47319143	47320143	+	986.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33579.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-131278339-4	chr6	131277832	131278832	+	986.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	14912.0	NM_001327860	66441.0	Mm.46623	NM_025564	ENSMUSG00000030188	Magohb	2010012C16Rik|Mago|Magoh|Magoh-rs1	mago homolog B, exon junction complex core component	protein-coding	59.0	49.5	55.5	35.5	93.0	44.0
Merged-chr1-149961656-4	chr1	149961173	149962173	+	986.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008869)	promoter-TSS (NM_008869)	-383.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32032228-4	chr9	32031703	32032703	+	986.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-83933.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88682232-7	chr10	88681781	88682781	+	986.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011461, intron 1 of 5)	B1_Mus1|SINE|Alu	742.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	99.5	245.5	189.5	75.0	189.5	168.5
Merged-chr11-96873286-3	chr11	96872792	96873792	+	986.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22899.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25436377-4	chr7	25435876	25436876	+	986.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015569, intron 4 of 6)	intron (NR_015569, intron 4 of 6)	-23490.0	NM_153576	232983.0	Mm.10545	NM_153576	ENSMUSG00000060188	Cxcl17	VCC-1|Vcc1	chemokine (C-X-C motif) ligand 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108766643-4	chr12	108766150	108767150	+	986.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26661.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-37934973-4	chr18	37934456	37935456	+	986.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305981, intron 1 of 28)	CpG	520.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-16131749-4	chr2	16131241	16132241	+	986.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310455, intron 33 of 38)	L2|LINE|L2	-224563.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116777245-3	chr4	116776733	116777733	+	986.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146151, intron 4 of 10)	L2|LINE|L2	30326.0	NM_026654	68276.0	Mm.30534	NM_026654	ENSMUSG00000028688	Toe1	4930584N22Rik|4933424D16Rik|AI413517	target of EGR1, member 1 (nuclear)	protein-coding	1.5	1.0	5.0	0.0	2.0	4.5
Merged-chr11-103262593-4	chr11	103262094	103263094	+	986.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	4807.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-93484431-2	chr15	93483931	93484931	+	986.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358750, intron 6 of 6)	ID_B1|SINE|B4	85967.0	NM_001285863	223828.0	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-74825889-4	chr2	74825411	74826411	+	986.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016804)	promoter-TSS (NM_016804)	99.0	NM_016804	53375.0	Mm.292613	NM_016804	ENSMUSG00000027099	Mtx2	1500012G02Rik	metaxin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-7086177-4	chr1	7085694	7086694	+	986.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2726.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79002661-4	chr3	79002169	79003169	+	986.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	142218.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	8.5	15.5	24.0	5.0	18.5	8.0
Merged-chr12-52701351-3	chr12	52700851	52701851	+	986.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198111, intron 1 of 13)	intron (NM_198111, intron 1 of 13)	1968.0	NM_198111	238161.0	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	0.0	0.0	0.0	3.0	0.0	0.0
Merged-chr2-145832800-7	chr2	145832315	145833315	+	986.238098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	46699.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45082910-10	chr7	45082419	45083419	+	986.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026555)	TTS (NM_026555)	9294.0	NM_026555	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-17932051-4	chr2	17931554	17932554	+	986.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64904.0	NM_026627	68231.0	Mm.23887	NM_026627	ENSMUSG00000062651	H2al2a	1700113O17Rik|H2A.Bbd|H2A.L.2|H2afb1|H2al2|TSEG-1|Tseg1	H2A histone family member L2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127792840-4	chr3	127792347	127793347	+	986.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356430, intron 2 of 2)	intron (NM_001356430, intron 2 of 2)	2190.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	98.0	380.0	224.5	122.5	300.5	183.5
Merged-chr1-193170077-4	chr1	193169577	193170577	+	986.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016851, exon 8 of 8)	3' UTR (NM_016851, exon 8 of 8)	-3392.0	NM_001160360	319266.0	Mm.482460	NM_181048	ENSMUSG00000079144	A130010J15Rik	-	RIKEN cDNA A130010J15 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64060555-5	chr15	64060087	64061087	+	986.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144846)	promoter-TSS (NM_144846)	-139.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	64.5	163.5	193.0	54.5	186.0	165.0
Merged-chr19-6976737-2	chr19	6976237	6977237	+	986.1999509999999	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360288)	TTS (NM_001360288)	1689.0	NM_008889	18938.0	Mm.140	NM_008889	ENSMUSG00000056612	Ppp1r14b	AOM172|PHI-1|PLCB3N|Png	protein phosphatase 1, regulatory (inhibitor) subunit 14B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75060438-4	chr10	75059963	75060963	+	986.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081412)	promoter-TSS (NM_001081412)	-433.0	NM_001081412	110279.0	Mm.333722	NM_001081412	ENSMUSG00000009681	Bcr	5133400C09Rik|AI561783|AI853148|mKIAA3017	breakpoint cluster region	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122438161-4	chr8	122437663	122438663	+	986.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028354, intron 5 of 10)	intron (NR_028354, intron 5 of 10)	-5223.0	NM_007806	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87332200-4	chr3	87331662	87332662	+	986.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B2|LTR|ERVK	-25719.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	89.0	106.0	109.5	139.0	364.0	247.5
Merged-chr1-59904191-3	chr1	59903688	59904688	+	986.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8818.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	12.5	0.0	0.5	3.5	5.0	6.0
Merged-chr1-167349322-4	chr1	167348845	167349845	+	986.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019993)	promoter-TSS (NM_019993)	-646.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-48270512-4	chr2	48270013	48271013	+	986.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-543596.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-30570355-4	chr17	30569850	30570850	+	986.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172618, intron 1 of 11)	MTD|LTR|ERVL-MaLR	5937.0	NM_172618	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	2.0	14.5	7.5	1.0	23.0	1.5
Merged-chr7-122087750-4	chr7	122087248	122088248	+	986.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028177, exon 5 of 5)	3' UTR (NM_028177, exon 5 of 5)	14100.0	NR_153798	70316.0	Mm.3014	NM_028177	ENSMUSG00000030869	Ndufab1	2210401F17Rik|2310039H15Rik|2610003B19Rik|8kDa|9130423F15Rik|ACP|CI-SDAP|SDAP	NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46896842-4	chr8	46896340	46897340	+	986.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-90047.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96338792-4	chr10	96338284	96339284	+	986.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112577.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115058916-2	chr11	115058416	115059416	+	986.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172050, intron 1 of 3)	intron (NM_172050, intron 1 of 3)	3123.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107017701-2	chr4	107017201	107018201	+	986.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_198438, intron 5 of 16)	intron (NM_198438, intron 5 of 16)	49165.0	NM_025500	56280.0	Mm.29517	NM_025500	ENSMUSG00000028622	Mrpl37	2300004O14Rik|AI132596|MRP-L2|Rpml2	mitochondrial ribosomal protein L37	protein-coding	1.0	0.0	1.0	0.0	0.0	2.0
Merged-chr10-127581831-2	chr10	127581331	127582331	+	986.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_008512, exon 20 of 89)	exon (NM_008512, exon 20 of 89)	39317.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	12.0	0.5	4.5	0.5	11.0	8.0
Merged-chr12-82446745-4	chr12	82446233	82447233	+	986.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 21 of 23)	ORR1A4|LTR|ERVL-MaLR	135384.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88534326-2	chr3	88533826	88534826	+	986.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029890, intron 1 of 1)	intron (NM_001029890, intron 1 of 1)	1931.0	NM_001029890	72640.0	Mm.275154	NM_001029890	ENSMUSG00000074480	Mex3a	2700083E18Rik|Gm411|Rkhd4	mex3 RNA binding family member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-81669392-6	chr17	81668847	81669847	+	986.138916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	69040.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121507503-4	chr10	121506968	121507968	+	986.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31218.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	20.0	39.5	37.0	26.0	54.5	61.0
Merged-chr17-84850638-4	chr17	84850118	84851118	+	986.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-59832.0	NM_028233	72416.0	Mm.217027	NM_028233	ENSMUSG00000024120	Lrpprc	3110001K13Rik|C76645|Gp130|Lrp130|Lsfc	leucine-rich PPR-motif containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77785882-4	chr11	77785367	77786367	+	986.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011586, intron 1 of 39)	intron (NM_011586, intron 1 of 39)	8632.0	NM_001291212	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-105055640-4	chr13	105055142	105056142	+	986.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029879)	promoter-TSS (NM_029879)	-712.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94154683-4	chr13	94154155	94155155	+	986.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	96859.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-53374863-2	chr10	53374363	53375363	+	986.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204983, intron 1 of 12)	B1_Mur1|SINE|Alu	4988.0	NM_001204983	100038725.0	Mm.441403	NM_001204983	ENSMUSG00000038594	Cep85l	Gm9766	centrosomal protein 85-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-58417035-3	chr3	58416558	58417558	+	986.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081229, exon 1 of 4)	exon (NM_001081229, exon 1 of 4)	2338.0	NM_001347233	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91380455-3	chr16	91379984	91380984	+	986.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 1 of 7)	intron (NM_001347258, intron 1 of 7)	7701.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34315665-3	chr1	34315189	34316189	+	986.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117510.0	NR_039562	100628580.0		NR_039562	ENSMUSG00000092852	Mir5103	mir-5103|mmu-mir-5103|mu-mir-5103	microRNA 5103	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84423138-3	chr8	84422628	84423628	+	986.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252060, intron 1 of 47)	intron (NM_001252060, intron 1 of 47)	7764.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	0.0	0.0	2.0	7.5	53.0	23.5
Merged-chr10-8007448-4	chr10	8006949	8007949	+	986.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51326.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr13-112361822-4	chr13	112361312	112362312	+	986.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168403, intron 8 of 11)	L1MD3|LINE|L1	73294.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	3.5	0.0	0.0	0.0	4.5	1.0
Merged-chr16-27388410-4	chr16	27387919	27388919	+	986.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026202)	promoter-TSS (NM_026202)	-537.0	NM_001025615	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127610771-4	chr10	127610261	127611261	+	986.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 2 of 88)	intron (NM_008512, intron 2 of 88)	10387.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	8.0	22.5	27.5	8.0	22.5	13.5
Merged-chr3-84259813-4	chr3	84259317	84260317	+	986.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271727)	promoter-TSS (NM_001271727)	-38.0	NM_001271727	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46609812-4	chr19	46609319	46610319	+	986.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177812, intron 2 of 4)	intron (NM_001177812, intron 2 of 4)	10713.0	NM_146099	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	68.5	184.0	136.0	18.5	63.0	53.5
Merged-chr2-168557050-4	chr2	168556566	168557566	+	986.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037177, intron 3 of 6)	intron (NM_001037177, intron 3 of 6)	33299.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-60830279-4	chr14	60829771	60830771	+	986.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027436, intron 12 of 18)	MTD|LTR|ERVL-MaLR	45705.0	NR_040642	70478.0	Mm.274650	NM_027436	ENSMUSG00000021993	Mipep	5730405E07Rik|MIP	mitochondrial intermediate peptidase	protein-coding	12.5	33.0	25.5	19.5	35.0	22.5
Merged-chr3-97681002-6	chr3	97680502	97681502	+	986.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9560.0	NR_106084	102466229.0		NR_106084	ENSMUSG00000098381	Mir7225	Gm27499|mmu-mir-7225	microRNA 7225	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4457895-4	chr2	4457392	4458392	+	986.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	56916.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91411023-4	chr16	91410518	91411518	+	986.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008349, intron 2 of 6)	MTE2a|LTR|ERVL-MaLR	4783.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	12.5	37.0	24.5	6.0	9.0	16.5
Merged-chr13-101697019-4	chr13	101696514	101697514	+	986.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 7 of 15)	intron (NM_001077495, intron 7 of 15)	-4384.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3505730-4	chr5	3505219	3506219	+	986.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-38114.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75168932-8	chr11	75168409	75169409	+	986.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001098203)	promoter-TSS (NM_001098203)	-757.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-97924059-4	chr4	97923556	97924556	+	986.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	146430.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63111829-4	chr14	63111332	63112332	+	986.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER2|DNA|TcMar-Tigger	-10630.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120767387-2	chr8	120766887	120767887	+	986.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28748.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-88728556-2	chr9	88728122	88729122	+	986.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007536, intron 1 of 1)	intron (NM_007536, intron 1 of 1)	3228.0	NM_007536	12047.0	Mm.378888	NM_007536	ENSMUSG00000099974	Bcl2a1d	A1-d	B cell leukemia/lymphoma 2 related protein A1d	protein-coding	1.0	0.5	4.0	1.0	0.5	1.0
Merged-chr13-58067385-3	chr13	58066884	58067884	+	986.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195075, intron 6 of 16)	intron (NM_001195075, intron 6 of 16)	35044.0	NM_001195075	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	26.0	78.5	34.5	25.0	27.5	34.0
Merged-chr13-3525924-4	chr13	3525384	3526384	+	986.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12191.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	21.5	32.5	20.5	26.0	19.0	25.5
Merged-chr9-57259934-4	chr9	57259423	57260423	+	986.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028820, intron 1 of 2)	intron (NM_028820, intron 1 of 2)	2676.0	NM_028820	74211.0	Mm.428905	NM_028820	ENSMUSG00000032300	1700017B05Rik	AA682102|D9Ertd278e	RIKEN cDNA 1700017B05 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105898635-4	chr3	105898264	105899264	+	986.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	(TCCC)n|Simple_repeat|Simple_repeat	-5657.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	10.0	30.5	9.0	7.0	40.0	24.5
Merged-chr13-6906186-4	chr13	6905708	6906708	+	986.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-257437.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103967350-2	chr11	103966847	103967847	+	986.0	f0_balb.idr|f0_c57.idr	5' UTR (NM_007477, exon 1 of 5)	5' UTR (NM_007477, exon 1 of 5)	476.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3769913-2	chr19	3769413	3770413	+	986.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167889, intron 2 of 10)	intron (NM_001167889, intron 2 of 10)	2492.0	NM_001167885	225888.0	Mm.278578	NM_144871	ENSMUSG00000045098	Kmt5b	AA117471|C630029K18Rik|Suv4-20h1|Suv420h1	lysine methyltransferase 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87525360-4	chr6	87524835	87525835	+	986.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	7924.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	1.0	20.5	14.0	2.0	10.0	8.5
Merged-chr2-70982593-2	chr2	70982093	70983093	+	986.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 3 of 9)	ORR1C1|LTR|ERVL-MaLR	35781.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46545932-2	chr17	46545432	46546432	+	986.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_020493)	TTS (NM_020493)	456.0	NM_001081335	78309.0	Mm.329076	NM_001081335	ENSMUSG00000040327	Cul9	1810035I07Rik|Cul-9|Parc|mKIAA0708	cullin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124230646-1	chr8	124230146	124231146	+	986.0	f1_balb.idr	promoter-TSS (NM_139272)	promoter-TSS (NM_139272)	-748.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	94.5	202.5	104.0	38.0	197.5	99.5
Merged-chr15-98739220-2	chr15	98738720	98739720	+	986.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007478, exon 5 of 5)	3' UTR (NM_007478, exon 5 of 5)	-11022.0	NM_024169	66120.0	Mm.30729	NM_024169	ENSMUSG00000003355	Fkbp11	1110002O23Rik|FKBP-11	FK506 binding protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16669860-1	chr1	16669360	16670360	+	986.0	f1_balb.idr	intron (NM_027415, intron 2 of 2)	B1_Mur2|SINE|Alu	4669.0	NM_026392	70397.0	Mm.194225	NM_026392	ENSMUSG00000025940	Tmem70	1110020A09Rik|2210416J16Rik	transmembrane protein 70	protein-coding	13.5	27.0	11.0	3.5	7.0	12.5
Merged-chr3-105688259-2	chr3	105687759	105688759	+	986.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017397)	promoter-TSS (NM_017397)	-688.0	NM_017397	53975.0	Mm.272826	NM_017397	ENSMUSG00000027905	Ddx20	GEMIN3|dp103	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	protein-coding	71.0	183.5	148.5	99.0	187.0	144.5
Merged-chr11-68440238-4	chr11	68439725	68440725	+	986.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	8100.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-40060442-3	chr15	40059932	40060932	+	986.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155348, intron 2 of 2)	intron (NR_155348, intron 2 of 2)	15244.0	NR_155348	102636079.0	Mm.421381	NR_155348	ENSMUSG00000115142	Gm33251	-	predicted gene, 33251	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32343421-4	chr4	32342917	32343917	+	986.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74018.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146738777-2	chr5	146738277	146739277	+	986.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 8 of 8)	ORR1D1|LTR|ERVL-MaLR	56179.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0.0	3.0	1.5	1.0	1.0	0.0
Merged-chr10-88337201-2	chr10	88336701	88337701	+	986.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 3 of 6)	URR1B|DNA|hAT-Charlie	19874.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160725991-2	chr2	160725491	160726491	+	986.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5319.0	NM_021280	18803.0	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61801270-2	chr14	61800770	61801770	+	986.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118897.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	34.5	94.5	84.5	41.5	82.0	88.5
Merged-chr10-81168552-2	chr10	81168052	81169052	+	986.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021501)	promoter-TSS (NM_021501)	-832.0	NM_021501	59004.0	Mm.34428	NM_021501	ENSMUSG00000004934	Pias4	PIASY|Pias-gamma|Piasg	protein inhibitor of activated STAT 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6376580-2	chr11	6376080	6377080	+	986.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18545.0	NM_001005867	52915.0	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-151645027-2	chr5	151644527	151645527	+	986.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027009, intron 5 of 8)	intron (NM_027009, intron 5 of 8)	6181.0	NM_027009	69263.0	Mm.12553	NM_027009	ENSMUSG00000033970	Rfc3	2810416I22Rik|38kDa|AU022547|Recc3	replication factor C (activator 1) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26973498-2	chr2	26972998	26973998	+	986.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290463)	promoter-TSS (NM_001290463)	82.0	NM_001290465	279028.0	Mm.330084	NM_001001322	ENSMUSG00000014852	Adamts13	ADAM-TS13|ADAMTS-13|Gm710|vWF-CP	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-63047704-2	chr11	63047204	63048204	+	986.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13955.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83631294-4	chr11	83630774	83631774	+	986.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18104.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3684794-2	chr4	3684223	3685223	+	986.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	B4A|SINE|B4	6602.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	30.5	93.0	59.0	9.5	47.5	27.5
Merged-chr10-117431285-1	chr10	117430785	117431785	+	986.0	f1_c57bl6.idr	Intergenic	Intergenic	16150.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	1.5	0.0	4.5	0.0	0.0	0.0
Merged-chr17-30000095-1	chr17	29999595	30000595	+	986.0	f1_balb.idr	Intergenic	B1F1|SINE|Alu	-4944.0	NM_148926	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	8.5	0.5	2.5	0.0	3.5	1.0
Merged-chr15-27908963-2	chr15	27908463	27909463	+	986.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 3 of 56)	intron (NM_001081302, intron 3 of 56)	116885.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103182314-4	chr15	103181811	103182811	+	985.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-19027.0	NM_027885	71726.0	Mm.254820	NM_027885	ENSMUSG00000036061	Smug1	1200013B09Rik|A930006H09Rik|C85220	single-strand selective monofunctional uracil DNA glycosylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70730281-4	chr8	70729776	70730776	+	985.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201607, intron 3 of 16)	CpG	6212.0	NM_201607	110385.0	Mm.255180	NM_201607	ENSMUSG00000031842	Pde4c	Dpde1|E130301F19Rik|dunce	phosphodiesterase 4C, cAMP specific	protein-coding	8.5	5.5	3.0	12.5	10.0	3.0
Merged-chr12-104751642-4	chr12	104751118	104752118	+	985.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148948, intron 1 of 26)	CpG	334.0	NM_148948	192119.0	Mm.21135	NM_148948	ENSMUSG00000041415	Dicer1	1110006F08Rik|D12Ertd7e|mKIAA0928	dicer 1, ribonuclease type III	protein-coding	8.0	25.0	20.0	5.0	10.5	16.0
Merged-chr16-33915233-4	chr16	33914750	33915750	+	985.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 9 of 14)	intron (NM_001145884, intron 9 of 14)	51788.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11430966-4	chr8	11430476	11431476	+	985.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009932, intron 29 of 47)	intron (NM_009932, intron 29 of 47)	-46953.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122356671-4	chr7	122356171	122357171	+	985.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	L1MB2|LINE|L1	67546.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-75687699-4	chr12	75687193	75688193	+	985.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-18156.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-123025317-4	chr7	123024804	123025804	+	985.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54740.0	NM_175023	19647.0	Mm.4480	NM_011247	ENSMUSG00000030779	Rbbp6	4933422O15Rik|AI316869|BB233631|C030034J04Rik|C77662|P2P-R|PACT	retinoblastoma binding protein 6, ubiquitin ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128312504-4	chr7	128311996	128312996	+	985.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14365.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50340827-3	chr6	50340320	50341320	+	985.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027881, intron 9 of 21)	MTC|LTR|ERVL-MaLR	42017.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	10.0	2.0	9.0	0.0	2.0	4.0
Merged-chr2-163939815-3	chr2	163939321	163940321	+	985.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21138.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	9.0	23.0	7.5	7.0	21.0	14.5
Merged-chr10-53435388-3	chr10	53434857	53435857	+	985.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25475.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-140987088-7	chr4	140986574	140987574	+	985.9387820000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029097, exon 1 of 29)	exon (NM_029097, exon 1 of 29)	201.0	NM_001164366	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-29950600-4	chr5	29950114	29951114	+	985.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA9|LINE|L1	-62500.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-73808733-4	chr18	73808247	73809247	+	985.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145494, intron 1 of 15)	intron (NM_145494, intron 1 of 15)	6645.0	NM_145494	107029.0	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	23.5	37.0	24.5	25.0	41.0	15.0
Merged-chr8-82843889-4	chr8	82843385	82844385	+	985.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19471.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	2.0	14.0	13.0	6.5	6.0	7.0
Merged-chr12-72761781-4	chr12	72761270	72762270	+	985.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008910, intron 1 of 5)	CpG	559.0	NM_008910	19042.0	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109657445-6	chr4	109656969	109657969	+	985.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	7903.0	NM_007671	12580.0	Mm.1912	NM_007671	ENSMUSG00000028551	Cdkn2c	C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c	cyclin dependent kinase inhibitor 2C	protein-coding	0.0	2.5	2.0	0.0	4.0	3.5
Merged-chr3-31425593-4	chr3	31425101	31426101	+	985.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-115282.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85083665-4	chr8	85083170	85084170	+	985.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010764, intron 1 of 23)	intron (NM_010764, intron 1 of 23)	401.0	NM_010764	17159.0	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	37.5	60.5	48.5	42.5	48.0	38.5
Merged-chr8-117303778-4	chr8	117303283	117304283	+	985.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-45387.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33963889-4	chr16	33963382	33964382	+	985.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009471, exon 2 of 6)	exon (NM_009471, exon 2 of 6)	3156.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41468469-4	chr13	41467987	41468987	+	985.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	18873.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	2.5	0.0	0.0	0.5	0.0	0.0
Merged-chr4-130960291-2	chr4	130959791	130960791	+	985.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15906.0	NM_010769	17180.0	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91850316-2	chr16	91849816	91850816	+	985.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 20 of 28)	intron (NM_001110275, intron 20 of 28)	81314.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15021694-3	chr17	15021191	15022191	+	985.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001123372, intron 11 of 11)	intron (NM_001123372, intron 11 of 11)	-11507.0	NM_198104	21647.0	Mm.440445	NM_011560	ENSMUSG00000079707	Tcte3	D17Leh117c|LC2|Tcte-3|Tctex-2|Tctex-4|Tctex2|Tctex4	t-complex-associated testis expressed 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10848973-4	chr17	10848459	10849459	+	985.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317726, intron 1 of 6)	intron (NM_001317726, intron 1 of 6)	8600.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84842999-4	chr3	84842495	84843495	+	985.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177773, intron 1 of 13)	RLTR31B2|LTR|ERVK	-21150.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	8.0	8.0	11.0	1.5	6.5	7.0
Merged-chr12-3391078-4	chr12	3390589	3391589	+	985.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008445, intron 5 of 7)	intron (NM_008445, intron 5 of 7)	25957.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-78219356-4	chr12	78218808	78219808	+	985.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7347.0	NM_172952	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68475846-4	chr11	68475348	68476348	+	985.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 3 of 18)	intron (NM_177320, intron 3 of 18)	-27171.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17111128-4	chr16	17110633	17111633	+	985.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252445, intron 1 of 19)	CpG	119.0	NM_001252445	66053.0	Mm.253614	NM_144954	ENSMUSG00000022771	Ppil2	0610009L05Rik|1700016N17Rik|4921520K19Rik|4930511F14Rik|AA589416|C130078A06Rik|CYC4	peptidylprolyl isomerase (cyclophilin)-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90222449-6	chr16	90221962	90222962	+	985.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011434, intron 1 of 4)	intron (NM_011434, intron 1 of 4)	1720.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87590736-4	chr6	87590226	87591226	+	985.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021381)	promoter-TSS (NM_021381)	17.0	NM_001355655	58182.0	Mm.333226	NM_021381	ENSMUSG00000049409	Prokr1	EG-VEGFR1|Gpr73|Pk-r1|Pkr1	prokineticin receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85080196-2	chr8	85079696	85080696	+	985.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001493)	promoter-TSS (NM_001001493)	550.0	NM_026399	67836.0	Mm.334680	NM_026399	ENSMUSG00000005150	Wdr83	1500041N16Rik|Morg1	WD repeat domain containing 83	protein-coding	11.5	15.0	7.0	9.0	13.0	13.5
Merged-chr14-64658537-4	chr14	64658048	64659048	+	985.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081177, intron 1 of 39)	intron (NM_001081177, intron 1 of 39)	6017.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	1.0	5.0	5.0	1.0	5.0	6.5
Merged-chr2-167717010-4	chr2	167716527	167717527	+	985.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25850.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90450390-2	chr2	90449890	90450890	+	985.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 15 of 23)	B4A|SINE|B4	28784.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	1.0	3.0	2.5	1.0	0.0	3.5
Merged-chr5-43879990-4	chr5	43879499	43880499	+	985.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	T-rich|Low_complexity|Low_complexity	11190.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	32.5	84.5	52.5	34.5	88.0	43.0
Merged-chr11-44382297-4	chr11	44381800	44382800	+	985.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17763.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	10.5	4.5	0.5	2.0	1.5	2.5
Merged-chr11-121434952-4	chr11	121434451	121435451	+	985.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022014)	promoter-TSS (NM_022014)	-2.0	NM_001038699	63828.0	Mm.266448	NM_022014	ENSMUSG00000025175	Fn3k	2310074G21Rik	fructosamine 3 kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36167833-4	chr17	36167313	36168313	+	985.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081032, intron 2 of 7)	CpG-6350	724.0	NM_001081032	667977.0	Mm.441651	NM_001081032	ENSMUSG00000073402	Gm8909	EG667977|H2-Tw5l|H2-gs17	predicted gene 8909	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6227272-4	chr4	6226762	6227762	+	985.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	36157.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	33.5	20.0	44.5	20.0	6.0	13.5
Merged-chr8-120618278-4	chr8	120617734	120618734	+	985.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308449, intron 2 of 3)	intron (NM_001308449, intron 2 of 3)	16148.0	NM_197988	68918.0	Mm.473736	NM_197988	ENSMUSG00000043687	1190005I06Rik	-	RIKEN cDNA 1190005I06 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119837988-4	chr8	119837522	119838522	+	985.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	2557.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120153721-4	chr2	120153214	120154214	+	985.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 1 of 5)	intron (NM_133838, intron 1 of 5)	861.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	88.5	266.5	199.5	126.0	324.5	237.5
Merged-chr4-3679941-7	chr4	3679477	3680477	+	985.761902	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	1856.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	37.0	160.5	63.5	40.5	180.0	85.0
Merged-chr11-21079931-4	chr11	21079430	21080430	+	985.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11394.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39623366-4	chr18	39622878	39623878	+	985.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-136133.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90900386-4	chr5	90899874	90900874	+	985.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3525.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	6.5	18.0	12.5	5.5	12.0	9.0
Merged-chr3-8964123-4	chr3	8963560	8964560	+	985.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025261)	promoter-TSS (NM_001025261)	86.0	NM_001025262	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-26253563-4	chr7	26253076	26254076	+	985.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13255.0	NM_001167540	100312477.0	Mm.480246	NM_001167540	ENSMUSG00000046130	Vmn1r184	-	vomeronasal 1 receptor, 184	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66882047-4	chr9	66881559	66882559	+	985.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	37646.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108847196-4	chr8	108846652	108847652	+	985.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 3 of 9)	intron (NM_007496, intron 3 of 9)	-89708.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	15.5	81.0	50.0	17.0	21.0	22.5
Merged-chr5-21218113-4	chr5	21217592	21218592	+	985.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 6 of 26)	Tigger17a|DNA|TcMar-Tigger	31825.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142766369-4	chr3	142765863	142766863	+	985.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145546, intron 1 of 6)	intron (NM_145546, intron 1 of 6)	1116.0	NM_145546	229906.0	Mm.271756	NM_145546	ENSMUSG00000028271	Gtf2b	-	general transcription factor IIB	protein-coding	2.5	7.5	0.5	0.0	5.0	0.0
Merged-chr4-40773327-4	chr4	40772829	40773829	+	985.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15444.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27075673-3	chr2	27075173	27076173	+	985.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3512.0	NM_025376	66139.0	Mm.330087	NM_025376	ENSMUSG00000009214	Mymk	1110002H13Rik|AI131587|Tmem8c|myomaker	myomaker, myoblast fusion factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29414661-4	chr19	29414151	29415151	+	985.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 1 of 5)	intron (NM_021396, intron 1 of 5)	3732.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-159900141-4	chr2	159899628	159900628	+	985.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47213.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	1.0	3.5	1.5	4.0	2.0	5.5
Merged-chr1-10232431-4	chr1	10231877	10232877	+	985.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001102430, exon 1 of 38)	exon (NM_001102430, exon 1 of 38)	293.0	NM_001102430	211673.0	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87638394-4	chr1	87637896	87638896	+	985.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	18084.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97592052-3	chr11	97591560	97592560	+	985.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6451.0	NR_045496	69729.0	Mm.233452	NR_045496	ENSMUSG00000085860	2410003L11Rik	-	RIKEN cDNA 2410003L11 gene	ncRNA	1.0	0.0	4.5	0.5	0.0	7.5
Merged-chr14-21832238-4	chr14	21831716	21832716	+	985.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011695, intron 2 of 9)	intron (NM_011695, intron 2 of 9)	655.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	128.5	204.5	133.5	121.0	225.5	104.5
Merged-chr9-63960568-4	chr9	63960105	63961105	+	985.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	61454.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46088055-3	chr4	46087567	46088567	+	985.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021883, intron 4 of 9)	intron (NM_021883, intron 4 of 9)	48845.0	NM_021883	21916.0	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	10.5	1.0	5.5	25.0	45.0	33.0
Merged-chr5-124862152-1	chr5	124861652	124862652	+	985.6666869999999	f1_balb.idr	promoter-TSS (NM_144819)	promoter-TSS (NM_144819)	69.0	NM_144819	215707.0	Mm.389693	NM_144819	ENSMUSG00000037979	Ccdc92	AW050178|D5Bwg0834e	coiled-coil domain containing 92	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr7-89309255-5	chr7	89308735	89309735	+	985.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 2 of 14)	ORR1F|LTR|ERVL-MaLR	29552.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4908950-2	chr16	4908450	4909450	+	985.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 2 of 17)	Lx5c|LINE|L1	22850.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41367372-4	chr19	41366886	41367886	+	985.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	17684.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	17.0	29.5	41.5	13.0	34.5	26.5
Merged-chr15-82806852-2	chr15	82806352	82807352	+	985.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	-12607.0	NM_029562	76279.0	Mm.439931	NM_029562	ENSMUSG00000022445	Cyp2d26	1300006E06Rik	cytochrome P450, family 2, subfamily d, polypeptide 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-69853075-4	chr14	69852585	69853585	+	985.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 3 of 6)	intron (NM_028560, intron 3 of 6)	12678.0	NM_028526	73523.0	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98972373-2	chr11	98971873	98972873	+	985.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361954, intron 6 of 7)	intron (NM_001361954, intron 6 of 7)	7501.0	NM_001361954	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-109298275-4	chr13	109297810	109298810	+	985.662476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-26434.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-75735680-5	chr12	75735189	75736189	+	985.628601	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030750)	promoter-TSS (NM_030750)	40.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25301180-4	chr12	25300683	25301683	+	985.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	172009.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	28.0	55.5	45.5	4.5	10.5	19.5
Merged-chr8-95806969-4	chr8	95806377	95807377	+	985.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015574)	promoter-TSS (NR_015574)	47.0	NR_015574	319960.0	Mm.386996	NR_015574	ENSMUSG00000074136	4930513N10Rik	-	RIKEN cDNA 4930513N10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-159232979-4	chr1	159232514	159233514	+	985.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011931, intron 1 of 19)	intron (NM_011931, intron 1 of 19)	814.0	NM_011931	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	97.5	179.0	136.0	31.5	122.0	104.5
Merged-chr5-107754905-4	chr5	107754395	107755395	+	985.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007964, intron 17 of 17)	intron (NM_007964, intron 17 of 17)	-29090.0	NM_001267621	14581.0	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-195032400-4	chr1	195031881	195032881	+	985.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015566, intron 7 of 7)	intron (NR_015566, intron 7 of 7)	-4659.0	NR_029809	723963.0		NR_029809	ENSMUSG00000065412	Mir29b-2	Mirn29b-2|mir-29b-2	microRNA 29b-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-60537266-4	chr3	60536756	60537756	+	985.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	36077.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	21.5	41.0	14.0	16.0	34.0	22.5
Merged-chr10-122564689-4	chr10	122564182	122565182	+	985.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040616)	TTS (NR_040616)	5209.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-33302252-4	chr12	33301762	33302762	+	985.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033436)	promoter-TSS (NM_001033436)	-253.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	13.0	74.0	65.0	36.5	52.0	51.5
Merged-chr4-155529502-4	chr4	155528999	155529999	+	985.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160016, intron 3 of 11)	B1_Mur4|SINE|Alu	-32882.0	NM_138671	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	8.0	13.0	6.0	6.5	11.0	2.5
Merged-chr10-117363275-4	chr10	117362768	117363768	+	985.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013391, intron 3 of 9)	B2_Mm2|SINE|B2	13705.0	NM_001013391	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128492163-2	chr10	128491663	128492663	+	985.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317217, intron 4 of 6)	intron (NM_001317217, intron 4 of 6)	846.0	NM_001317220	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31172270-4	chr2	31171809	31172809	+	985.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178760, intron 5 of 17)	intron (NM_178760, intron 5 of 17)	19993.0	NM_178760	277463.0	Mm.236074	NM_178760	ENSMUSG00000000194	Gpr107	9930033D15Rik|AI790205|C530034M11|mKIAA1624	G protein-coupled receptor 107	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-96998305-6	chr5	96997740	96998740	+	985.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 1 of 15)	intron (NM_080708, intron 1 of 15)	551.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-52817796-4	chr1	52817303	52818303	+	985.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008384)	promoter-TSS (NM_008384)	-115.0	NM_008384	16329.0	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	4.5	3.5	3.5	14.5	4.0	4.5
Merged-chr1-65180006-4	chr1	65179523	65180523	+	985.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010497)	promoter-TSS (NM_010497)	-881.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-29453450-4	chr16	29452970	29453970	+	985.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164613, intron 13 of 21)	intron (NM_001164613, intron 13 of 21)	-74738.0	NM_175650	268878.0	Mm.9823	NM_175650	ENSMUSG00000048939	Atp13a5	C630015F21Rik	ATPase type 13A5	protein-coding	1.5	0.5	4.0	2.0	1.5	10.5
Merged-chr16-44026459-4	chr16	44025959	44026959	+	985.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359085, intron 5 of 16)	L1M4|LINE|L1	1486.0	NM_001172107	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78810343-4	chr15	78809804	78810804	+	985.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G|LTR|ERVL-MaLR	-7262.0	NM_130859	105844.0	Mm.17629	NM_130859	ENSMUSG00000033170	Card10	AI449026|Bimp1|Carma3	caspase recruitment domain family, member 10	protein-coding	7.5	1.5	0.0	4.5	4.5	3.0
Merged-chr9-64824882-4	chr9	64824380	64825380	+	985.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162917, intron 2 of 34)	intron (NM_001162917, intron 2 of 34)	13869.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-157445062-3	chr1	157444573	157445573	+	985.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13495.0	NM_001356418	226527.0	Mm.215960	NM_001033284	ENSMUSG00000033488	Cryzl2	-	crystallin zeta like 2	protein-coding	0.5	0.0	0.5	0.0	2.5	0.5
Merged-chr13-95844478-4	chr13	95843979	95844979	+	985.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	47443.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	104.0	351.0	157.5	34.0	104.5	64.5
Merged-chr4-129335953-4	chr4	129335448	129336448	+	985.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025970)	promoter-TSS (NM_025970)	-78.0	NM_025970	67106.0	Mm.36575	NM_025970	ENSMUSG00000057572	Zbtb8os	2010001H09Rik|2310028N13Rik|AI851226|Arch|Archm	zinc finger and BTB domain containing 8 opposite strand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8098911-4	chr3	8098406	8099406	+	985.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa-int|LTR|ERVL-MaLR	-144019.0	NR_040587	75476.0	Mm.491752	NR_040587	ENSMUSG00000100010	1700010I02Rik	-	RIKEN cDNA 1700010I02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97787859-10	chr15	97787401	97788401	+	985.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026353, intron 1 of 2)	intron (NM_026353, intron 1 of 2)	3536.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153899150-2	chr1	153898650	153899650	+	985.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106194)	promoter-TSS (NR_106194)	-776.0	NR_106194	102466257.0		NR_106194	ENSMUSG00000099227	Mir8114	Gm27382|mmu-mir-8114	microRNA 8114	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-6248626-3	chr6	6248117	6249117	+	985.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_136906)	promoter-TSS (NR_136906)	-42.0	NR_136906	101056138.0	Mm.389085	NR_136904	ENSMUSG00000093482	Gm20619	-	predicted gene 20619	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-14881573-4	chr3	14881075	14882075	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER44D|DNA|TcMar-Tigger	-4694.0	NM_001357334	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	7.0	0.0	4.0	1.0	1.5	2.5
Merged-chr4-134714165-4	chr4	134713657	134714657	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	-9867.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11008081-7	chr8	11007564	11008564	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081212, exon 1 of 2)	exon (NM_001081212, exon 1 of 2)	214.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-69220774-2	chr17	69220274	69221274	+	985.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	56432.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-16621026-4	chr10	16620522	16621522	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	474760.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	3.0	3.0	0.0	1.5	0.0	0.5
Merged-chr10-19526523-4	chr10	19526024	19527024	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31881.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98357852-2	chr7	98357341	98358341	+	985.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001168541, intron 2 of 3)	intron (NM_001168541, intron 2 of 3)	3447.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	33.5	96.5	115.5	40.0	117.5	119.5
Merged-chr18-39737437-4	chr18	39736935	39737935	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36062.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71658593-2	chr8	71658093	71659093	+	985.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001029873, exon 10 of 42)	exon (NM_001029873, exon 10 of 42)	13164.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.5	0.5
Merged-chr3-79181851-4	chr3	79181356	79182356	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31063.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	26.0	37.5	42.0	11.5	23.0	19.5
Merged-chr7-43664627-2	chr7	43664127	43665127	+	985.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-4466.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64096232-4	chr15	64095730	64096730	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 26 of 28)	MIR|SINE|MIR	-35782.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	11.0	31.0	15.0	7.0	31.5	21.5
Merged-chr19-40658531-2	chr19	40658031	40659031	+	985.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	-1239.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.0	6.0	0.0	1.0	0.5	5.5
Merged-chr1-156559357-4	chr1	156558873	156559873	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 1 of 12)	CpG	586.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	36.0	115.0	80.0	15.0	70.5	41.0
Merged-chr1-86038360-4	chr1	86037840	86038840	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7523.0	NM_001144993	72792.0	Mm.54981	NM_001144992	ENSMUSG00000026227	2810459M11Rik	-	RIKEN cDNA 2810459M11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94240349-4	chr16	94239841	94240841	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 5 of 10)	L1MB4|LINE|L1	49950.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8165740-4	chr17	8165244	8166244	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201230, intron 1 of 11)	CpG	226.0	NM_201230	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139242638-4	chr4	139242145	139243145	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 2 of 9)	intron (NM_001037761, intron 2 of 9)	48534.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	34.5	106.0	70.0	43.5	82.0	104.0
Merged-chr10-96328662-4	chr10	96328149	96329149	+	985.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	102442.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23745610-4	chr13	23745104	23746104	+	985.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175653)	promoter-TSS (NM_175653)	-83.0	NM_175653	319148.0	Mm.262517	NM_175653	ENSMUSG00000069310	Hist1h3c	H3-143	histone cluster 1, H3c	protein-coding	102.5	140.0	101.5	42.5	192.0	89.5
Merged-chr10-34195061-4	chr10	34194555	34195555	+	985.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	12496.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124026585-4	chr5	124026084	124027084	+	985.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	5676.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	5.0	24.5	10.5	14.0	21.5	12.0
Merged-chr13-21734998-4	chr13	21734491	21735491	+	985.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178210)	promoter-TSS (NM_178210)	-43.0	NM_178210	319159.0		NM_178210	ENSMUSG00000067455	Hist1h4j	-	histone cluster 1, H4j	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34463029-4	chr1	34462537	34463537	+	985.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011206, intron 2 of 14)	intron (NM_011206, intron 2 of 14)	3291.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-54211950-4	chr5	54211443	54212443	+	985.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138049.0	NR_038045	330086.0	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13	predicted gene 10440	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29528038-8	chr6	29527567	29528567	+	985.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311083, intron 1 of 9)	intron (NM_001311083, intron 1 of 9)	-1215.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-14869448-3	chr14	14868940	14869940	+	985.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195229, intron 21 of 34)	HAL1|LINE|L1	48625.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	6.0	0.0	2.0	0.5	1.5	2.0
Merged-chr17-43060889-3	chr17	43060377	43061377	+	985.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 3 of 5)	intron (NM_178589, intron 3 of 5)	44322.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	18.5	99.0	88.5	92.5	220.5	163.0
Merged-chr15-96757650-3	chr15	96757147	96758147	+	985.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57919.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75586452-4	chr10	75586009	75587009	+	985.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008116)	TTS (NM_008116)	-2872.0	NM_011820	23887.0	Mm.257927	NM_011820	ENSMUSG00000006344	Ggt5	AI551243|GGL|GGT-REL|Ggtla1	gamma-glutamyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108629748-4	chr12	108629254	108630254	+	985.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163395, intron 1 of 12)	RLTR14|LTR|ERV1	-5999.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90461104-4	chr7	90460602	90461602	+	985.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-3894.0	NM_025460	66271.0	Mm.28963	NM_025460	ENSMUSG00000030615	Tmem126a	1810020E01Rik	transmembrane protein 126A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-54076462-7	chr10	54075974	54076974	+	985.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008548)	promoter-TSS (NM_008548)	552.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80327514-4	chr11	80327012	80328012	+	985.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139228, intron 4 of 8)	intron (NM_139228, intron 4 of 8)	26600.0	NM_139228	246104.0	Mm.194148	NM_139228	ENSMUSG00000017692	Rhbdl3	AI847581|Rhbdl4|Rhomr1|Vrho	rhomboid like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144933266-4	chr3	144932738	144933738	+	985.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033199)	promoter-TSS (NM_001033199)	-709.0	NM_001033199	99709.0	Mm.440040	NM_001033199	ENSMUSG00000074195	Clca4b	AI747448|Clca7	chloride channel accessory 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83998456-4	chr8	83997957	83998957	+	985.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081415, exon 1 of 5)	exon (NM_001081415, exon 1 of 5)	785.0	NM_001081415	666704.0	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118353767-4	chr11	118353254	118354254	+	985.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011594, intron 1 of 4)	intron (NM_011594, intron 1 of 4)	1657.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164952810-2	chr2	164952310	164953310	+	985.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013599, intron 9 of 12)	intron (NM_013599, intron 9 of 12)	4591.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-66894815-3	chr4	66894327	66895327	+	985.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67276.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0.0	0.0	1.0	0.0	2.5	0.5
Merged-chr7-66355711-4	chr7	66355229	66356229	+	985.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 2 of 33)	intron (NM_146191, intron 2 of 33)	25995.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	42.5	169.0	90.0	75.0	131.5	85.0
Merged-chr1-95339820-4	chr1	95339324	95340324	+	985.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	26196.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-90310509-4	chr15	90310008	90311008	+	985.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-43202.0	NR_155426	102640415.0	Mm.394352	NR_155426	ENSMUSG00000116204	Gm36480	-	predicted gene, 36480	ncRNA	2.0	1.0	5.5	12.5	1.0	9.0
Merged-chr5-99571165-4	chr5	99570665	99571665	+	985.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	157895.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17562076-4	chr16	17561577	17562577	+	985.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029053)	promoter-TSS (NM_029053)	192.0	NM_001159561	18440.0	Mm.8032	NM_011028	ENSMUSG00000022758	P2rx6	P2rxl1|P2x6|P2xm	purinergic receptor P2X, ligand-gated ion channel, 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83653958-6	chr7	83653441	83654441	+	985.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 13 of 18)	intron (NM_001360088, intron 13 of 18)	1554.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	4.0	8.0	1.0	4.0	12.0	0.0
Merged-chr4-150013770-8	chr4	150013192	150014192	+	985.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4669.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	124.5	220.0	225.0	111.0	161.0	143.5
Merged-chr9-41136708-4	chr9	41136191	41137191	+	985.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	21371.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	24.0	42.0	25.5	58.5	94.0	58.5
Merged-chr17-27629495-2	chr17	27629033	27630033	+	985.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025963)	TTS (NM_025963)	5709.0	NM_025963	67097.0	Mm.275810	NM_025963	ENSMUSG00000052146	Rps10	2210402A09Rik	ribosomal protein S10	protein-coding	0.0	4.5	0.0	0.0	1.5	2.5
Merged-chr16-91462888-4	chr16	91462374	91463374	+	985.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-2230.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	36.0	193.0	104.5	57.0	162.0	79.5
Merged-chr17-29671206-4	chr17	29670694	29671694	+	985.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028791, intron 2 of 23)	MTD-int|LTR|ERVL-MaLR	10599.0	NM_028791	74157.0	Mm.390979	NM_028791	ENSMUSG00000024019	Cmtr1	1300018I05Rik|AI451264|Ftsjd2|MTr1	cap methyltransferase 1	protein-coding	2.5	5.0	8.0	0.0	13.0	1.0
Merged-chr3-126650569-4	chr3	126650075	126651075	+	985.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	53624.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	6.0	19.0	16.0	15.0	7.0	11.0
Merged-chr3-158061715-4	chr3	158061245	158062245	+	985.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359763, intron 11 of 13)	intron (NM_001359763, intron 11 of 13)	25063.0	NM_001289524	67144.0	Mm.358704	NM_024194	ENSMUSG00000063052	Lrrc40	2610040E16Rik|AI837674	leucine rich repeat containing 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23548841-4	chr17	23548327	23549327	+	985.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Arg-AGG|tRNA|tRNA	-1972.0	NR_126485	320020.0	Mm.445111	NR_126484		6330415G19Rik	-	RIKEN cDNA 6330415G19 gene	ncRNA	4.0	9.5	4.0	4.0	9.5	2.0
Merged-chr4-88708211-2	chr4	88707711	88708711	+	985.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14297.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29039801-4	chr7	29039302	29040302	+	985.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009109, intron 87 of 105)	MER91B|DNA|hAT-Tip100	43892.0	NR_035489	100316710.0		NR_035489	ENSMUSG00000089219	Mir1963	mir-1963|mmu-mir-1963	microRNA 1963	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61375320-4	chr10	61374811	61375811	+	985.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013753, intron 1 of 19)	intron (NM_013753, intron 1 of 19)	8212.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-46905893-4	chr1	46905393	46906393	+	985.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356417, intron 1 of 10)	intron (NM_001356417, intron 1 of 10)	19883.0	NM_001356417	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-70872279-4	chr6	70871788	70872788	+	985.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010121, intron 2 of 16)	intron (NM_010121, intron 2 of 16)	27773.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-92939262-3	chr13	92938765	92939765	+	985.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94478.0	NM_001162945	382793.0	Mm.296770	NM_001162945	ENSMUSG00000021704	Mtx3	4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514	metaxin 3	protein-coding	6.0	5.5	9.5	0.0	8.5	0.0
Merged-chr17-4742502-4	chr17	4741992	4742992	+	985.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	107512.0	NR_130984	75117.0	Mm.429393	NR_130984		4930517M08Rik	-	RIKEN cDNA 4930517M08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16255601-4	chr7	16255110	16256110	+	985.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001173550, intron 1 of 1)	B3A|SINE|B2	3728.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	50.5	73.0	51.0	38.0	60.0	61.0
Merged-chr18-61632509-4	chr18	61632021	61633021	+	985.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7132.0	NR_045420	545261.0	Mm.426593	NR_045420	ENSMUSG00000098098	Bvht	Braveheart|Gm20748	braveheart long non-coding RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40630270-4	chr19	40629773	40630773	+	985.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	L1M4a1|LINE|L1	17907.0	NM_001304721	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	58.5	164.0	163.5	88.0	167.5	138.0
Merged-chr13-23430932-4	chr13	23430426	23431426	+	985.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015492)	promoter-TSS (NR_015492)	91.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89389239-4	chr3	89388686	89389686	+	985.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009565, intron 1 of 2)	intron (NM_009565, intron 1 of 2)	-1515.0	NM_001355206	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11533592-4	chr19	11533079	11534079	+	985.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3270.0	NM_025658	66607.0	Mm.441056	NM_025658	ENSMUSG00000024678	Ms4a4d	2210417J23Rik	membrane-spanning 4-domains, subfamily A, member 4D	protein-coding	2.0	2.5	1.5	0.0	4.5	2.5
Merged-chr18-60891381-4	chr18	60890887	60891887	+	985.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20853.0	NM_001038499	545260.0	Mm.20147	NM_001038499	ENSMUSG00000036412	Arsi	BC020108	arylsulfatase i	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146767855-3	chr5	146767368	146768368	+	985.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 2 of 8)	intron (NM_011669, intron 2 of 8)	27088.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0.0	21.0	2.0	0.0	0.5	2.0
Merged-chr3-100530385-7	chr3	100529880	100530880	+	985.253967	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41188.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	10.5	17.5	32.0	1.5	12.5	10.5
Merged-chr15-81142355-4	chr15	81141848	81142848	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 1 of 13)	intron (NM_001082536, intron 1 of 13)	-37301.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	3.0	0.0	0.5	1.5	0.0	0.5
Merged-chr9-57485936-2	chr9	57485436	57486436	+	985.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17876.0	NM_001301635	56807.0	Mm.102278	NM_020270	ENSMUSG00000040722	Scamp5	Sc5	secretory carrier membrane protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97867362-4	chr6	97866866	97867866	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	60308.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-65565668-4	chr4	65565168	65566168	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207109, intron 17 of 22)	intron (NM_207109, intron 17 of 22)	-39318.0	NM_053084	69807.0	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-22744897-4	chr2	22744407	22745407	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-29420.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-16900965-4	chr12	16900462	16901462	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009072, intron 1 of 32)	intron (NM_009072, intron 1 of 32)	5984.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	10.0	5.0	8.0	4.5	6.5	3.5
Merged-chr3-116290318-4	chr3	116289809	116290809	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001173553, intron 13 of 13)	intron (NM_001173553, intron 13 of 13)	-36825.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138345130-4	chr4	138344658	138345658	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028176, intron 2 of 3)	intron (NM_028176, intron 2 of 3)	-18862.0	NM_026880	68943.0	Mm.18539	NM_026880	ENSMUSG00000028756	Pink1	1190006F07Rik|AU042772|AW557854|BRPK|mFLJ00387	PTEN induced putative kinase 1	protein-coding	5.0	0.0	1.5	0.0	6.5	4.0
Merged-chr6-72742592-4	chr6	72742084	72743084	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079822, intron 3 of 12)	intron (NM_001079822, intron 3 of 12)	46461.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36516785-2	chr18	36516245	36517245	+	985.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010415)	promoter-TSS (NM_010415)	-940.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	1.0	1.0	0.0	5.0	6.5	0.0
Merged-chr17-65771199-4	chr17	65770670	65771670	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	1582.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	78.5	89.5	81.5	64.5	84.0	51.5
Merged-chr11-61774962-4	chr11	61774471	61775471	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013881)	TTS (NM_013881)	-12883.0	NM_001164243	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83322133-4	chr6	83321628	83322628	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-3911.0	NM_145571	232157.0	Mm.29500	NM_145571	ENSMUSG00000043131	Mob1a	4022402H07Rik|MOB1|MOB4B|Mobk1b|Mobkl1b	MOB kinase activator 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155490562-4	chr4	155490066	155491066	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160017)	promoter-TSS (NM_001160017)	-795.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	165.5	456.0	357.0	162.0	482.5	328.5
Merged-chr17-70709381-3	chr17	70708861	70709861	+	985.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360665, intron 9 of 14)	intron (NM_001360665, intron 9 of 14)	137416.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.0	4.5	4.0	3.0	6.5	1.0
Merged-chr9-48444034-3	chr9	48443533	48444533	+	985.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10311.0	NR_026561	667933.0	Mm.491076	NR_026561		Gm8884	EG667933	predicted gene 8884	ncRNA	0.0	0.0	1.0	0.0	0.5	2.0
Merged-chr11-96034848-4	chr11	96034334	96035334	+	985.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033568)	promoter-TSS (NM_033568)	-51.0	NM_033568	27681.0	Mm.372235	NM_033568	ENSMUSG00000006058	Snf8	D11Moh34	SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)	protein-coding	4.5	9.5	10.5	4.5	7.5	2.0
Merged-chr9-78427546-4	chr9	78427066	78428066	+	985.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	15671.0	NR_125721	214763.0	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88714969-4	chr10	88714464	88715464	+	985.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16137.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134690464-4	chr5	134689973	134690973	+	985.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1883.0	NM_010717	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-68168000-4	chr15	68167503	68168503	+	985.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152182, intron 8 of 13)	intron (NR_152182, intron 8 of 13)	90853.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155068165-4	chr4	155067670	155068670	+	985.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042407, intron 2 of 5)	intron (NM_001042407, intron 2 of 5)	1140.0	NM_001042407	668173.0	Mm.133114	NM_001042407	ENSMUSG00000029047	Pex10	AV128229|Gm142	peroxisomal biogenesis factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-26773186-4	chr10	26772662	26773662	+	985.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	650.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152622984-4	chr1	152622439	152623439	+	985.1979369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	2278.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161594828-4	chr1	161594332	161595332	+	985.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	100175.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	3.5	35.0	9.0	6.5	42.0	10.5
Merged-chr1-16618026-8	chr1	16617525	16618525	+	985.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271016, intron 1 of 6)	intron (NM_001271016, intron 1 of 6)	1313.0	NM_025773	66799.0	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92985910-6	chr1	92985423	92986423	+	985.172241	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_022320, exon 2 of 2)	3' UTR (NM_022320, exon 2 of 2)	7020.0	NM_022320	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67736805-4	chr10	67736309	67737309	+	985.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-164850.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-83842655-4	chr3	83842148	83843148	+	985.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1040.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	3.0	18.5	17.0	13.0	12.0	7.5
Merged-chr1-155901511-4	chr1	155901018	155902018	+	985.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001039184, exon 24 of 38)	exon (NM_001039184, exon 24 of 38)	71737.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	73.5	187.5	118.5	18.0	31.0	23.5
Merged-chr17-57194071-4	chr17	57193543	57194543	+	985.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019418, exon 1 of 4)	exon (NM_019418, exon 1 of 4)	138.0	NM_019418	50930.0	Mm.483369	NM_019418	ENSMUSG00000005824	Tnfsf14	HVEM-L|HVEML|LIGHT|LTg|Ly113|Tnlg1d	tumor necrosis factor (ligand) superfamily, member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85080668-2	chr8	85080168	85081168	+	985.1666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026399)	promoter-TSS (NM_026399)	78.0	NM_026399	67836.0	Mm.334680	NM_026399	ENSMUSG00000005150	Wdr83	1500041N16Rik|Morg1	WD repeat domain containing 83	protein-coding	31.0	66.0	31.5	60.5	66.5	66.5
Merged-chr3-98083143-4	chr3	98082627	98083627	+	985.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 5 of 33)	RSINE1|SINE|B4	69589.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34501785-4	chr5	34501304	34502304	+	985.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139064, intron 2 of 5)	intron (NM_139064, intron 2 of 5)	12175.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-21650079-4	chr17	21649513	21650513	+	985.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166497)	promoter-TSS (NM_001166497)	-598.0	NM_001166497	73229.0	Mm.296733	NM_001166497	ENSMUSG00000035868	Zfp983	3110052M02Rik|mszf57|mszf71	zinc finger protein 983	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-7753357-4	chr6	7752843	7753843	+	985.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60161.0	NM_012055	27053.0	Mm.2942	NM_012055	ENSMUSG00000029752	Asns	-	asparagine synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64422242-3	chr13	64421777	64422777	+	985.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-10276.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	3.0	3.5	1.0	3.0	2.0	1.5
Merged-chr15-102517195-4	chr15	102516672	102517672	+	985.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009582)	promoter-TSS (NM_009582)	-168.0	NM_009582	26404.0	Mm.172897	NM_009582	ENSMUSG00000023050	Map3k12	DLK|MUK|Zpk	mitogen-activated protein kinase kinase kinase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102460292-2	chr12	102459797	102460797	+	985.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8837.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	4.0	12.0	9.5	1.5	0.0	5.0
Merged-chr13-60673871-2	chr13	60673424	60674424	+	985.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	B2_Mm2|SINE|B2	71713.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	103.5	307.0	195.5	127.0	273.0	200.0
Merged-chr18-82530302-4	chr18	82529802	82530802	+	985.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025245, intron 3 of 3)	intron (NM_001025245, intron 3 of 3)	-24161.0	NM_001025258	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70466405-4	chr11	70465911	70466911	+	985.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001348337)	TTS (NM_001348337)	-6427.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40853173-4	chr4	40852680	40853680	+	985.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	1357.0	NM_022305	14595.0	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	13.0	61.0	48.0	30.5	51.0	38.5
Merged-chr5-139826912-4	chr5	139826404	139827404	+	985.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356963)	promoter-TSS (NM_001356963)	-10.0	NM_025604	66506.0	Mm.29070	NM_025604	ENSMUSG00000029551	Psmg3	1810042K04Rik|4930403H09Rik|AI303239	proteasome (prosome, macropain) assembly chaperone 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-121509345-4	chr1	121508913	121509913	+	985.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010483)	TTS (NM_010483)	19052.0	NM_010483	15564.0	Mm.4833	NM_010483	ENSMUSG00000050534	Htr5b	5-Ht5b	5-hydroxytryptamine (serotonin) receptor 5B	protein-coding	18.5	77.0	68.0	10.0	24.0	38.5
Merged-chr1-131672570-4	chr1	131672083	131673083	+	985.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007799, intron 9 of 9)	intron (NM_007799, intron 9 of 9)	-16112.0	NM_001311096	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	2.5	1.0	1.5	2.5	5.5	3.0
Merged-chr12-36364523-4	chr12	36364025	36365025	+	985.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16925.0	NM_001289504	75847.0	Mm.261764	NM_178629	ENSMUSG00000043153	Ispd	4930579E17Rik|AV040780	isoprenoid synthase domain containing	protein-coding	15.5	12.5	10.5	1.5	8.5	1.0
Merged-chr6-32588488-3	chr6	32587991	32588991	+	985.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175750)	promoter-TSS (NM_175750)	-299.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30597307-6	chr16	30596783	30597783	+	985.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2440.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11479300-9	chr8	11478784	11479784	+	985.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011227)	promoter-TSS (NM_011227)	-785.0	NM_011227	19332.0	Mm.37632	NM_011227	ENSMUSG00000031504	Rab20	AA536966|D8Ertd350e	RAB20, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51063916-4	chr14	51063436	51064436	+	985.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Leu-CTY|tRNA|tRNA	-6694.0	NM_001011875	497106.0	Mm.379740	NM_001011875	ENSMUSG00000068407	Rnase12	Rai1	ribonuclease, RNase A family, 12 (non-active)	protein-coding	52.5	120.0	83.0	61.5	107.5	78.5
Merged-chr2-5772660-4	chr2	5772161	5773161	+	985.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57899.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	5.5	2.0	1.5	5.0	3.0	6.0
Merged-chr3-142478554-4	chr3	142478051	142479051	+	985.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18383.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	2.0	5.0	2.5	2.0	0.0	0.5
Merged-chr4-72201809-4	chr4	72201305	72202305	+	985.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285529)	promoter-TSS (NM_001285529)	561.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-13659361-4	chr17	13658915	13659915	+	985.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	-101126.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	12.0	63.0	47.5	11.0	59.0	41.0
Merged-chr2-165993794-4	chr2	165993275	165994275	+	985.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	1138.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-144971220-4	chr4	144970737	144971737	+	985.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78100.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-154794794-4	chr1	154794261	154795261	+	985.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-68841.0	NM_009782	12290.0	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35327077-4	chr2	35326570	35327570	+	985.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013515, intron 1 of 6)	intron (NM_013515, intron 1 of 6)	9939.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67278648-4	chr18	67278138	67279138	+	985.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10585.0	NM_053261	114663.0	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	3.5	1.0	0.0	3.5	1.0	0.0
Merged-chr2-143978644-4	chr2	143978164	143979164	+	985.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024281, intron 2 of 23)	intron (NM_024281, intron 2 of 23)	32599.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-21517058-4	chr17	21516712	21517712	+	985.0714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18327.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66801727-4	chr15	66801228	66802228	+	985.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029841, intron 1 of 7)	intron (NM_001029841, intron 1 of 7)	30101.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152573251-4	chr1	152572743	152573743	+	985.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	51974.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125376066-4	chr5	125375575	125376575	+	985.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13942.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	9.5	4.0	0.5	4.5	21.0	15.5
Merged-chr13-112792157-4	chr13	112791671	112792671	+	985.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8606.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133182860-3	chr4	133182356	133183356	+	985.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 2 of 8)	B1F2|SINE|Alu	-12799.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	38.0	78.0	72.0	69.0	125.5	94.0
Merged-chr6-26304411-4	chr6	26303909	26304909	+	985.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	372983.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95821162-4	chr16	95820665	95821665	+	985.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77548.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115488315-4	chr5	115487807	115488807	+	985.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3823.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	5.5	59.5	24.5	5.5	28.0	28.0
Merged-chr1-191095761-4	chr1	191095251	191096251	+	985.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-2663.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	12.0	24.0	20.0	19.0	19.5	7.0
Merged-chr10-94552327-4	chr10	94551822	94552822	+	985.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359760, intron 1 of 3)	intron (NM_001359760, intron 1 of 3)	1402.0	NM_001359760	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	12.0	25.5	6.0	12.5	23.5	6.5
Merged-chr16-84584068-4	chr16	84583561	84584561	+	985.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95728.0	NR_040537	78023.0	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	15.0	57.5	50.5	2.0	0.5	6.0
Merged-chr12-111694533-4	chr12	111694002	111695002	+	985.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16397.0	NM_177374	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8822721-4	chr4	8822204	8823204	+	985.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 7 of 36)	intron (NM_001355382, intron 7 of 36)	71380.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75104501-4	chr8	75103936	75104936	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-5073.0	NM_001302540	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	10.0	6.0	6.0	8.0	16.0	8.0
Merged-chr13-23402237-2	chr13	23401737	23402737	+	985.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21629.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87038399-4	chr6	87037901	87038901	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4445.0	NM_013528	14583.0	Mm.19893	NM_013528	ENSMUSG00000029992	Gfpt1	2810423A18Rik|AI324119|AI449986|GFA|GFAT|GFAT1|GFAT1m|Gfpt	glutamine fructose-6-phosphate transaminase 1	protein-coding	17.0	93.0	23.5	20.5	77.0	55.5
Merged-chr15-78977017-2	chr15	78976517	78977517	+	985.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138579, intron 11 of 23)	intron (NM_138579, intron 11 of 23)	-6039.0	NM_001024716	110253.0	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-72736547-1	chr1	72736047	72737047	+	985.0	f0_balb.idr	Intergenic	Intergenic	25287.0	NM_009084	19981.0	Mm.21529	NM_009084	ENSMUSG00000046330	Rpl37a	-	ribosomal protein L37a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56958051-4	chr17	56957571	56958571	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175731, intron 4 of 5)	intron (NM_175731, intron 4 of 5)	-22683.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115300339-4	chr5	115299902	115300902	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131932)	promoter-TSS (NR_131932)	588.0	NM_019682	56455.0	Mm.256858	NM_019682	ENSMUSG00000009013	Dynll1	Dlc8|Dnclc1|Pin	dynein light chain LC8-type 1	protein-coding	15.0	26.5	21.5	17.0	25.5	20.0
Merged-chr9-114799875-2	chr9	114799375	114800375	+	985.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027294, intron 1 of 3)	intron (NM_027294, intron 1 of 3)	-17882.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr3-66981267-4	chr3	66980777	66981777	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302359)	promoter-TSS (NM_001302359)	-136.0	NM_001302359	20429.0	Mm.39093	NM_013665	ENSMUSG00000027833	Shox2	6330543G17Rik|OG12|Og12x|Prx3|SHOT	short stature homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137890814-4	chr4	137890342	137891342	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	28605.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	5.5	21.0	1.0	4.0	1.0	4.5
Merged-chr8-70633798-1	chr8	70633298	70634298	+	985.0	f1_c57bl6.idr	Intergenic	Intergenic	-1342.0	NM_001330687	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	44.5	51.0	56.0	2.0	33.0	25.5
Merged-chr2-50837803-1	chr2	50837303	50838303	+	985.0	f0_balb.idr	Intergenic	Intergenic	-71881.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-83074783-4	chr13	83074341	83075341	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-376508.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	8.5	18.0	18.5	15.5	18.0	18.0
Merged-chr10-53431213-4	chr10	53430729	53431729	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21347.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147521087-2	chr4	147520587	147521587	+	985.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32190.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35136405-2	chr17	35135905	35136905	+	985.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252469, intron 2 of 23)	intron (NM_001252469, intron 2 of 23)	691.0	NM_001252469	224727.0	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90461534-4	chr16	90461030	90462030	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015755, intron 4 of 10)	intron (NM_015755, intron 4 of 10)	75133.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30604688-4	chr16	30604192	30605192	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4969.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128778546-2	chr10	128778046	128779046	+	985.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-12364.0	NM_001164197	58223.0	Mm.131266	NM_021412	ENSMUSG00000025355	Mmp19	-	matrix metallopeptidase 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127286441-2	chr10	127285950	127286950	+	985.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_033072, exon 6 of 13)	exon (NM_033072, exon 6 of 13)	2568.0	NM_001347171	110962.0	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	0.0	0.0	0.5	0.0	2.5	0.0
Merged-chr2-51089518-4	chr2	51089070	51090070	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59541.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-146221443-2	chr2	146220943	146221943	+	985.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016889)	promoter-TSS (NM_016889)	-554.0	NM_016889	53626.0	Mm.379070	NM_016889	ENSMUSG00000068154	Insm1	IA-1	insulinoma-associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30624741-2	chr13	30624241	30625241	+	985.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045975)	TTS (NR_045975)	9698.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166677297-2	chr2	166676797	166677797	+	985.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	36535.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125542061-4	chr7	125541547	125542547	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10235.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	12.5	16.5	20.5	6.5	11.5	10.0
Merged-chr6-29436965-2	chr6	29436465	29437465	+	985.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081185, intron 1 of 47)	intron (NM_001081185, intron 1 of 47)	3709.0	NM_001311074	68794.0	Mm.39046	NM_026839	ENSMUSG00000068699	Flnc	1110055E19Rik|ABP-280|ABPL|Fln2	filamin C, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120116962-2	chr5	120116462	120117462	+	985.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028762, intron 1 of 23)	MTD|LTR|ERVL-MaLR	449.0	NM_028762	74111.0	Mm.41022	NM_028762	ENSMUSG00000029594	Rbm19	1200009A02Rik|AV302714|NPO	RNA binding motif protein 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-112433563-4	chr2	112433063	112434063	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21462.0	NM_133749	73024.0	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93100664-2	chr1	93100164	93101164	+	985.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001294149, intron 1 of 47)	CpG	1210.0	NM_001294149	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99088472-4	chr15	99087954	99088954	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024702)	promoter-TSS (NM_001024702)	-726.0	NM_001024702	239659.0	Mm.309917	NM_001024702	ENSMUSG00000001076	C1ql4	C1qtnf11|CTRP11	complement component 1, q subcomponent-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80069343-4	chr12	80068835	80069835	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43678.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59669025-4	chr13	59668525	59669525	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035122, intron 1 of 9)	intron (NM_001035122, intron 1 of 9)	6759.0	NM_001035122	105348.0	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21172372-4	chr13	21171887	21172887	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Gln-CAG|tRNA|tRNA	-7544.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	6.0	5.0	2.0	6.0	6.0	2.5
Merged-chr12-75817714-3	chr12	75817201	75818201	+	985.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005510)	promoter-TSS (NM_001005510)	-617.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-54924377-2	chr1	54923877	54924877	+	985.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	2010.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71537469-4	chr6	71536956	71537956	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-6396.0	NM_001361405	66700.0	Mm.181278	NM_025783	ENSMUSG00000053119	Chmp3	25.1|4921505F14Rik|9130011K15Rik|CGI-49|D6Ertd286e|NEDF|Vps24	charged multivesicular body protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89405189-4	chr6	89404681	89405681	+	984.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 5 of 6)	intron (NM_001167736, intron 5 of 6)	-42568.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24481942-4	chr7	24481446	24482446	+	984.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153112)	promoter-TSS (NM_153112)	-77.0	NM_153112	260299.0	Mm.178322	NM_153112	ENSMUSG00000054793	Cadm4	Igdf4c|Igsf4c|Tsll2	cell adhesion molecule 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20211957-4	chr13	20211442	20212442	+	984.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 4 of 21)	intron (NM_080288, intron 4 of 21)	121435.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	8.0	46.5	21.0	10.5	15.5	7.5
Merged-chr5-110978586-4	chr5	110978093	110979093	+	984.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	-25551.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85131791-4	chr11	85131278	85132278	+	984.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029934, intron 1 of 33)	intron (NM_001029934, intron 1 of 33)	8177.0	NM_001029934	237898.0	Mm.178524	NM_001029934	ENSMUSG00000000804	Usp32	2900074J03Rik|6430526O11Rik|AW045245	ubiquitin specific peptidase 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-19963904-4	chr11	19963410	19964410	+	984.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	39468.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33564815-4	chr17	33564320	33565320	+	984.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053214, intron 1 of 27)	intron (NM_053214, intron 1 of 27)	9113.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	123.5	257.5	155.0	79.0	140.0	141.5
Merged-chr11-84880699-4	chr11	84880206	84881206	+	984.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077636)	promoter-TSS (NM_001077636)	-421.0	NM_001077636	70325.0	Mm.390414	NM_027388	ENSMUSG00000045140	Pigw	2610044A17Rik|Gwt1	phosphatidylinositol glycan anchor biosynthesis, class W	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44538394-4	chr13	44537894	44538894	+	984.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98667.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	0.5	2.5	6.0	0.0	0.5	4.0
Merged-chr5-124598707-4	chr5	124598227	124599227	+	984.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026486)	promoter-TSS (NM_026486)	-22.0	NM_026486	67978.0	Mm.1158	NM_026486		Tctn2	4432405B04Rik|Tect2	tectonic family member 2	protein-coding	2.0	0.0	5.5	5.0	1.0	2.0
Merged-chr7-90132580-4	chr7	90132077	90133077	+	984.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	2364.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	170.0	341.5	258.0	164.0	358.0	245.5
Merged-chr3-107062873-3	chr3	107062388	107063388	+	984.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23384.0	NR_033498	229694.0	Mm.347584	NM_173787	ENSMUSG00000056145	AI504432	A230102G19	expressed sequence AI504432	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139371375-4	chr5	139370876	139371876	+	984.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	-1631.0	NR_029768	723898.0		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148408237-4	chr2	148407699	148408699	+	984.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009378)	promoter-TSS (NM_009378)	-11.0	NM_009378	21824.0	Mm.24096	NM_009378	ENSMUSG00000074743	Thbd	AI385582|CD141|TM	thrombomodulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3178115-2	chr11	3177608	3178608	+	984.916626	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 5 of 32)	intron (NM_030207, intron 5 of 32)	15355.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-106805073-4	chr6	106804567	106805567	+	984.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4980.0	NM_175357	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-169774621-3	chr2	169774105	169775105	+	984.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	140959.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	1.5	10.0	6.5	0.0	0.0	1.5
Merged-chr5-5749349-4	chr5	5748836	5749836	+	984.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027399)	promoter-TSS (NM_027399)	-19.0	NM_027399	70358.0	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-42837724-4	chr9	42837232	42838232	+	984.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175481, intron 1 of 20)	intron (NM_175481, intron 1 of 20)	106639.0	NM_175481	110637.0	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80483733-4	chr18	80483240	80484240	+	984.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14073.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-85801404-3	chr16	85800922	85801922	+	984.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009621, intron 1 of 8)	intron (NM_009621, intron 1 of 8)	1691.0	NM_009621	11504.0	Mm.1421	NM_009621	ENSMUSG00000022893	Adamts1	ADAM-TS1|ADAMTS|ADAMTS-1|C3-C5|METH-1|METH1	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90029396-8	chr7	90029007	90030007	+	984.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 1 of 5)	intron (NR_110365, intron 1 of 5)	348.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89391975-4	chr3	89391493	89392493	+	984.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355211)	promoter-TSS (NM_001355211)	76.0	NM_001355211	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191288938-4	chr1	191288430	191289430	+	984.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29188.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0.5	4.5	0.0	0.0	0.0	0.0
Merged-chr6-142519356-2	chr6	142518856	142519856	+	984.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11399.0	NM_001316322	16832.0	Mm.9745	NM_008492	ENSMUSG00000030246	Ldhb	AI790582|H-Ldh|LDH-B|LDH-H|Ldh-2|Ldh2	lactate dehydrogenase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65539160-2	chr9	65538660	65539660	+	984.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40927.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22155774-4	chr9	22155293	22156293	+	984.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1053.0	NM_001082532	66268.0	Mm.28924	NM_025457	ENSMUSG00000010607	Pigyl	1810008A14Rik|PIG-Y|Pigy	phosphatidylinositol glycan anchor biosynthesis, class Y-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102246290-6	chr15	102245785	102246785	+	984.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001042727, exon 1 of 8)	5' UTR (NM_001042727, exon 1 of 8)	215.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-48227876-4	chr13	48227374	48228374	+	984.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102303, intron 1 of 2)	CpG	-33553.0	NM_031166	15904.0	Mm.458006	NM_031166	ENSMUSG00000021379	Id4	Idb4|bHLHb27	inhibitor of DNA binding 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-89575651-4	chr1	89575167	89576167	+	984.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	108225.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-6145088-4	chr18	6144569	6145569	+	984.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8971.0	NM_001039692	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	14.5	69.0	27.5	49.5	43.5	57.5
Merged-chr1-120524369-4	chr1	120523863	120524863	+	984.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19339.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	1.5	3.0	0.5	1.0	2.5	0.5
Merged-chr3-142621351-4	chr3	142620857	142621857	+	984.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010260, intron 1 of 10)	Lx8|LINE|L1	694.0	NM_010260	14469.0	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-70386369-4	chr16	70385896	70386896	+	984.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 2 of 15)	MLTR14|LTR|ERV1	72447.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	19.0	72.5	61.5	8.0	49.0	27.5
Merged-chr18-82815350-4	chr18	82814854	82815854	+	984.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-40543.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38950599-4	chr2	38950073	38951073	+	984.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172854, intron 4 of 7)	intron (NM_172854, intron 4 of 7)	18593.0	NM_172854	241327.0	Mm.103491	NM_172854	ENSMUSG00000046618	Olfml2a	4932431K08Rik|mFLJ00237	olfactomedin-like 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32202306-3	chr16	32201804	32202804	+	984.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	22504.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-7501875-3	chr3	7501370	7502370	+	984.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1556.0	NM_173181	67306.0	Mm.332366	NM_173181	ENSMUSG00000043542	Zc2hc1a	3110050N22Rik|AI790358|AU023959|Fam164a	zinc finger, C2HC-type containing 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102447660-3	chr11	102447133	102448133	+	984.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199200)	promoter-TSS (NM_199200)	30.0	NM_199200	217219.0	Mm.259924	NM_199200	ENSMUSG00000034685	Fam171a2	-	family with sequence similarity 171, member A2	protein-coding	0.0	3.0	3.5	0.0	0.0	1.5
Merged-chr4-3483787-3	chr4	3483277	3484277	+	984.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY3-int|LTR|ERVK	-53313.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	4.5	0.0	1.5	7.5	0.0	0.0
Merged-chr13-10251957-4	chr13	10251464	10252464	+	984.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 1 of 4)	L1MC1|LINE|L1	108839.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123128594-4	chr5	123128130	123129130	+	984.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175092, intron 2 of 4)	intron (NM_175092, intron 2 of 4)	3999.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-15154986-3	chr10	15154485	15155485	+	984.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	394696.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96219295-4	chr3	96218762	96219762	+	984.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178213)	promoter-TSS (NM_178213)	-654.0	NM_178213	621893.0		NM_178213	ENSMUSG00000063689	Hist2h2ab	EG621893|H2a-613a	histone cluster 2, H2ab	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5142686-4	chr18	5142193	5143193	+	984.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23038.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85712824-4	chr12	85712283	85713283	+	984.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26063.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-143225093-4	chr6	143224594	143225594	+	984.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20794.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181275493-4	chr2	181274977	181275977	+	984.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198169, intron 2 of 9)	intron (NM_198169, intron 2 of 9)	12489.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-103376576-4	chr5	103376072	103377072	+	984.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29974.0	NR_152117	75519.0	Mm.416851	NR_152117	ENSMUSG00000105426	1700021F02Rik	Gm42618	RIKEN cDNA 1700021F02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94333577-2	chr8	94333077	94334077	+	984.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001205311, exon 5 of 25)	exon (NM_001205311, exon 5 of 25)	4369.0	NM_001205311	20497.0	Mm.25804	NM_019415	ENSMUSG00000031766	Slc12a3	AI035291|NCC|NCCT|TSC	solute carrier family 12, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55459950-4	chr12	55459455	55460455	+	984.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32692.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47595707-4	chr17	47595210	47596210	+	984.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 4 of 6)	intron (NM_001081635, intron 4 of 6)	2243.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-20295123-4	chr3	20294626	20295626	+	984.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19393.0	NM_029706	76703.0	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40733545-4	chr9	40733080	40734080	+	984.708374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	47616.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	1.5	3.0	0.5	11.0	53.5	22.0
Merged-chr6-113334249-4	chr6	113333743	113334743	+	984.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_149720)	TTS (NR_149720)	7267.0	NM_010957	18294.0	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-97062305-4	chr5	97061797	97062797	+	984.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 11 of 15)	intron (NM_080708, intron 11 of 15)	49299.0	NM_001359910	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	5.5	36.5	25.0	3.5	36.5	19.0
Merged-chr6-52160243-4	chr6	52159746	52160746	+	984.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131181, intron 1 of 1)	intron (NR_131181, intron 1 of 1)	1722.0	NR_131181	105242658.0	Mm.372521	NR_131181	ENSMUSG00000087658	Hotairm1	Gm15051|Hoxaas1	Hoxa transcript antisense RNA, myeloid-specific 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-93758291-4	chr6	93757798	93758798	+	984.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029850, intron 8 of 23)	Tigger7|DNA|TcMar-Tigger	154665.0	NR_104594	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	25.5	48.0	39.5	46.0	148.5	82.5
Merged-chr1-39615002-4	chr1	39614491	39615491	+	984.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36191.0	NM_170597	263764.0	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61257729-4	chr9	61257219	61258219	+	984.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	36090.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71873922-7	chr2	71873421	71874421	+	984.6904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360002)	promoter-TSS (NM_001360002)	697.0	NM_172665	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	29.5	116.0	93.0	22.5	43.5	62.5
Merged-chr6-108832427-4	chr6	108831920	108832920	+	984.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138677, intron 1 of 11)	intron (NM_138677, intron 1 of 11)	3779.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	13.5	7.0	9.5	6.0	5.0	4.5
Merged-chr1-131963041-7	chr1	131962543	131963543	+	984.68573	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001177628, exon 1 of 5)	5' UTR (NM_001177628, exon 1 of 5)	128.0	NM_001177628	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-30498747-3	chr3	30498203	30499203	+	984.672241	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361034, intron 1 of 16)	intron (NM_001361034, intron 1 of 16)	10972.0	NM_001361034	14013.0	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	0.0	1.5	0.0	1.0	2.0	11.0
Merged-chr8-72712750-4	chr8	72712268	72713268	+	984.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_176940, exon 19 of 19)	3' UTR (NM_176940, exon 19 of 19)	-10502.0	NM_001113248	20467.0	Mm.2137	NM_009188	ENSMUSG00000031622	Sin3b	2810430C10Rik	transcriptional regulator, SIN3B (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-94582690-4	chr1	94582189	94583189	+	984.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-214753.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114229454-2	chr11	114228954	114229954	+	984.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	31196.0	NR_045930	73536.0	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132107205-4	chr2	132106730	132107730	+	984.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	37878.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25539523-4	chr9	25539044	25540044	+	984.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	57947.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91477819-4	chr16	91477322	91478322	+	984.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-7393.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122295737-4	chr3	122295248	122296248	+	984.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2045.0	NR_030439	791077.0		NR_030439	ENSMUSG00000076456	Mir760	Mirn760|mir-760|mmu-mir-760	microRNA 760	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38247416-3	chr18	38246939	38247939	+	984.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015475, intron 1 of 3)	Lx8|LINE|L1	2759.0	NR_015475	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	0.0	8.5	3.0	7.0	10.0	0.0
Merged-chr4-32288636-5	chr4	32288181	32289181	+	984.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-128754.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105139621-4	chr5	105139114	105140114	+	984.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256005)	promoter-TSS (NM_001256005)	-28.0	NM_001359080	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	31.5	73.5	48.5	8.0	31.5	31.5
Merged-chr14-54410330-6	chr14	54409838	54410838	+	984.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253680)	promoter-TSS (NM_001253680)	-866.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	85.5	263.0	191.0	96.5	218.5	168.0
Merged-chr11-95851798-2	chr11	95851320	95852320	+	984.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6997.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	61.0	152.5	129.5	84.5	134.5	123.0
Merged-chr3-36064729-4	chr3	36064216	36065216	+	984.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-1263.0	NM_172678	229211.0	Mm.260997	NM_172678	ENSMUSG00000027710	Acad9	2600017P15Rik|4732402K02|C630012L17Rik|NPD002	acyl-Coenzyme A dehydrogenase family, member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101829410-2	chr5	101828910	101829910	+	984.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64280.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	2.0	1.0	2.5	0.0	0.0	0.0
Merged-chr3-148202394-4	chr3	148201908	148202908	+	984.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E2|LTR|ERVL-MaLR	752227.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	3.5	1.0	1.0	4.5	5.5	4.5
Merged-chr2-145741793-4	chr2	145741304	145742304	+	984.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 3 of 3)	intron (NR_033220, intron 3 of 3)	40609.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-41951249-4	chr9	41950768	41951768	+	984.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125945.0	NM_001357261	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	3.5	0.0	4.0	0.0	0.0	6.0
Merged-chr2-166684237-4	chr2	166683701	166684701	+	984.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	29631.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-113664621-4	chr9	113664137	113665137	+	984.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164678, intron 12 of 17)	intron (NM_001164678, intron 12 of 17)	43622.0	NM_001164678	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66908184-4	chr9	66907670	66908670	+	984.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	11535.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117064515-2	chr10	117064015	117065015	+	984.599976	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007636)	promoter-TSS (NM_007636)	-663.0	NM_007636	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-183978794-4	chr1	183978261	183979261	+	984.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	55237.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124790271-4	chr2	124789777	124790777	+	984.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136696.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-26626805-4	chr14	26626311	26627311	+	984.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285467, intron 16 of 19)	intron (NM_001285467, intron 16 of 19)	-11323.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108650714-4	chr12	108650207	108651207	+	984.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 3 of 14)	L1M5|LINE|L1	-7913.0	NR_029771	723909.0		NR_029771	ENSMUSG00000065436	Mir342	Mirn342|mmu-mir-342	microRNA 342	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64269689-4	chr5	64269197	64270197	+	984.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 5 of 18)	intron (NM_001289514, intron 5 of 18)	39340.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	37.5	90.5	32.5	34.5	49.0	41.0
Merged-chr5-66105571-4	chr5	66105071	66106071	+	984.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-7392.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25537904-4	chr8	25537401	25538401	+	984.5750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079909, intron 2 of 16)	intron (NM_001079909, intron 2 of 16)	18182.0	NR_110510	102633315.0	Mm.437828	NR_110510	ENSMUSG00000086134	Gm16159	-	predicted gene 16159	ncRNA	2.0	5.0	7.0	7.5	9.5	7.5
Merged-chr11-54802428-4	chr11	54801915	54802915	+	984.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14712.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11172339-4	chr2	11171836	11172836	+	984.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008859)	promoter-TSS (NM_008859)	-46.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141722200-4	chr4	141721696	141722696	+	984.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017966, intron 1 of 9)	intron (NM_001017966, intron 1 of 9)	1223.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	120.5	321.0	216.0	74.5	246.0	143.5
Merged-chr17-6001570-4	chr17	6001070	6002070	+	984.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357667, intron 4 of 24)	intron (NM_001357667, intron 4 of 24)	-6010.0	NM_001290698	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56290342-7	chr17	56289798	56290798	+	984.5238039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025836, intron 1 of 7)	intron (NM_025836, intron 1 of 7)	213.0	NM_025836	66905.0	Mm.311696	NM_025836	ENSMUSG00000024197	Plin3	1300012C15Rik|M6prbp1|Tip47	perilipin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116077631-4	chr11	116077150	116078150	+	984.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347642)	TTS (NM_001347642)	311.0	NM_001009573	70450.0	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67700971-4	chr10	67700456	67701456	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-128997.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28780311-3	chr7	28779816	28780816	+	984.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022432, intron 8 of 15)	intron (NM_022432, intron 8 of 15)	1198.0	NR_040339	100503790.0	Mm.446894	NR_040339		Gm19897	-	predicted gene, 19897	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-181540621-4	chr1	181540106	181541106	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29155.0	NM_207280	403180.0	Mm.220754	NM_207280	ENSMUSG00000050625	Ccdc121	6530421E24Rik|Gm755	coiled-coil domain containing 121	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9160609-2	chr13	9160109	9161109	+	984.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 13 of 17)	B4|SINE|B4	66728.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107296157-4	chr9	107295650	107296650	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009895)	promoter-TSS (NM_009895)	-509.0	NM_009895	12700.0	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	10.0	23.0	23.0	7.5	5.0	7.5
Merged-chr14-118178537-4	chr14	118178067	118179067	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	41440.0	NM_021434	58245.0	Mm.275411	NM_021434	ENSMUSG00000022131	Gpr180	AB041545|E130016I23Rik|Itr	G protein-coupled receptor 180	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89356573-4	chr15	89356070	89357070	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178919)	promoter-TSS (NM_178919)	851.0	NM_001271601	52683.0	Mm.143167	NM_001115132	ENSMUSG00000008690	Ncaph2	-	non-SMC condensin II complex, subunit H2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54844596-4	chr12	54844117	54845117	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18260.0	NM_007688	12632.0	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	2.0	8.5	2.0	2.5	4.0	0.0
Merged-chr8-122470207-2	chr8	122469707	122470707	+	984.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033142, exon 2 of 6)	exon (NM_001033142, exon 2 of 6)	5857.0	NM_001033142	68718.0	Mm.34356	NM_001033142	ENSMUSG00000014470	Rnf166	1110031E24Rik|AW555115|Zfp313l	ring finger protein 166	protein-coding	3.0	10.5	1.0	0.0	7.5	0.0
Merged-chr5-52742247-4	chr5	52741734	52742734	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025951, intron 1 of 9)	intron (NM_025951, intron 1 of 9)	660.0	NM_025951	67073.0	Mm.248647	NM_025951	ENSMUSG00000029186	Pi4k2b	2610042N09Rik|4933409G22Rik	phosphatidylinositol 4-kinase type 2 beta	protein-coding	19.0	65.0	50.0	41.0	54.0	57.5
Merged-chr11-71253560-2	chr11	71253060	71254060	+	984.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_027858, intron 7 of 12)	intron (NR_027858, intron 7 of 12)	-22827.0	NM_001040696	637515.0	Mm.390402	NM_001039680	ENSMUSG00000070390	Nlrp1b	Nalp1b	NLR family, pyrin domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103374112-4	chr11	103373605	103374605	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 7 of 11)	intron (NM_183034, intron 7 of 11)	-10413.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-127608738-4	chr5	127608235	127609235	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133895, intron 2 of 7)	intron (NM_133895, intron 2 of 7)	8657.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-72536937-2	chr14	72536437	72537437	+	984.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	173066.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-5359467-3	chr5	5358971	5359971	+	984.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	B3A|SINE|B2	20780.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	52.5	115.0	67.0	63.0	106.0	71.5
Merged-chr5-52833281-2	chr5	52832781	52833781	+	984.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024213)	promoter-TSS (NM_024213)	-854.0	NM_024213	52206.0	Mm.272568	NM_024213	ENSMUSG00000029176	Anapc4	2610306D21Rik|APC4|D5Ertd249e	anaphase promoting complex subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58017021-2	chr15	58016521	58017521	+	984.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B4|LTR|ERVL	17273.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111785702-4	chr10	111785199	111786199	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	88677.0	NR_046029	629206.0	Mm.391444	NR_046029	ENSMUSG00000112533	Gm20758	-	predicted gene, 20758	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87349897-4	chr3	87349407	87350407	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-7974.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	33.5	51.5	58.5	31.0	101.0	74.5
Merged-chr9-101076198-2	chr9	101075698	101076698	+	984.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001100451, intron 1 of 1)	intron (NM_001100451, intron 1 of 1)	1436.0	NM_001100451	77853.0	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	MSL complex subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49178072-4	chr13	49177580	49178580	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-9467.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77737730-6	chr9	77737368	77738368	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-16667.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	38.5	64.0	80.5	59.0	182.5	145.0
Merged-chr10-88354405-2	chr10	88353905	88354905	+	984.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 1 of 6)	ID|SINE|ID	2670.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-64836326-2	chr16	64835826	64836826	+	984.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347245, intron 1 of 8)	intron (NM_001347245, intron 1 of 8)	15397.0	NM_001347245	72020.0	Mm.25960	NM_028059	ENSMUSG00000047141	Zfp654	1600021C16Rik|1810008K20Rik|433036|Gm5488|Znf654	zinc finger protein 654	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92217414-4	chr1	92216910	92217910	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-37069.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	2.0	6.0	1.0	2.0	5.0	1.0
Merged-chr4-123342904-4	chr4	123342412	123343412	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001256019, exon 1 of 7)	5' UTR (NM_001256019, exon 1 of 7)	340.0	NM_001256019	12163.0	Mm.439749	NM_007558	ENSMUSG00000032726	Bmp8a	Bmp7r1|OP-2|OP2	bone morphogenetic protein 8a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29522990-4	chr6	29522483	29523483	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3642.0	NM_001311083	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-42351620-2	chr6	42351120	42352120	+	984.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011777, exon 5 of 10)	exon (NM_011777, exon 5 of 10)	1792.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81607356-2	chr10	81606856	81607856	+	984.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_030677, intron 2 of 2)	ORR1B1-int|LTR|ERVL-MaLR	1048.0	NR_030677	268319.0	Mm.131825	NM_001033363	ENSMUSG00000074862	BC025920	-	zinc finger protein pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33815589-3	chr17	33815076	33816076	+	984.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030697, intron 1 of 10)	B2_Mm1a|SINE|B2	5053.0	NM_030697	80880.0	Mm.196330	NM_030697	ENSMUSG00000042099	Kank3	0610013D04Rik|Ankrd47|D17Ertd288e|NG28	KN motif and ankyrin repeat domains 3	protein-coding	15.5	15.0	9.5	34.5	52.5	47.5
Merged-chr8-20557767-3	chr8	20557307	20558307	+	984.466675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-57120.0	NM_001270553	100861668.0	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59239421-4	chr4	59238913	59239913	+	984.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20638.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	4.5	3.0	5.0	2.5	10.0	6.5
Merged-chr12-32765863-4	chr12	32765347	32766347	+	984.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54488.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	23.0	27.5	27.0	24.0	66.5	26.5
Merged-chr14-57713023-4	chr14	57712518	57713518	+	984.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015771, intron 2 of 7)	intron (NM_015771, intron 2 of 7)	21400.0	NM_153382	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-4902950-4	chr6	4902474	4903474	+	984.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181595)	promoter-TSS (NM_181595)	-346.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-24424434-4	chr8	24423933	24424933	+	984.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	14513.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	6.0	14.0	7.5	1.5	7.5	5.0
Merged-chr12-112873771-4	chr12	112873284	112874284	+	984.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12868.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167348081-4	chr2	167347577	167348577	+	984.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	1101.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148069932-4	chr4	148069440	148070440	+	984.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	A-rich|Low_complexity|Low_complexity	18124.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-156067740-4	chr4	156067242	156068242	+	984.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7940.0	NR_132444	100415901.0	Mm.437006	NR_132444	ENSMUSG00000086549	Gm13648	-	predicted gene 13648	ncRNA	5.0	9.5	10.5	0.0	22.5	7.0
Merged-chr11-120360240-4	chr11	120359721	120360721	+	984.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1313.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184738087-4	chr1	184737585	184738585	+	984.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5592.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	3.5	0.0	0.0	1.5	0.0	0.0
Merged-chr8-83144786-4	chr8	83144248	83145248	+	984.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-20604.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	65.0	75.5	39.0	145.0	292.0	187.0
Merged-chr3-52453300-4	chr3	52452801	52453801	+	984.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63663.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135982491-2	chr5	135981990	135982990	+	984.4166869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_011776, intron 1 of 7)	intron (NM_011776, intron 1 of 7)	2385.0	NM_011776	22788.0	Mm.1381	NM_011776	ENSMUSG00000004948	Zp3	Zp-3	zona pellucida glycoprotein 3	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr19-24971512-4	chr19	24971003	24972003	+	984.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9887.0	NM_146097	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	0.0	0.0	2.0	12.5	3.0	7.5
Merged-chr2-52862126-4	chr2	52861614	52862614	+	984.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	4246.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-117048598-4	chr13	117048103	117049103	+	984.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1N2|LTR|ERVL-MaLR	-23087.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	1.0	6.0	3.0	0.0	5.5	0.0
Merged-chr8-111525355-4	chr8	111524865	111525865	+	984.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-3258.0	NM_176923	319481.0	Mm.247294	NM_176923	ENSMUSG00000031959	Wdr59	5430401O09Rik|Cdw12	WD repeat domain 59	protein-coding	3.5	15.0	8.0	0.5	16.0	0.0
Merged-chr7-80200137-3	chr7	80199613	80200613	+	984.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	1672.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-69141062-4	chr14	69140558	69141558	+	984.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30744.0	NM_010920	18092.0	Mm.390691	NM_010920	ENSMUSG00000044186	Nkx2-6	AV044928|Nkx-2.6|Nkx2.6|Tix|tinman	NK2 homeobox 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149690216-4	chr4	149689731	149690731	+	984.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029837, intron 1 of 23)	intron (NM_001029837, intron 1 of 23)	8477.0	NM_001164050	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	2.0	33.0	13.0	2.0	16.5	8.0
Merged-chr19-28680044-5	chr19	28679528	28680528	+	984.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305671)	promoter-TSS (NM_001305671)	49.0	NM_001305671	226075.0	Mm.223508	NM_175459	ENSMUSG00000052942	Glis3	4833409N03Rik|E330013K21Rik	GLIS family zinc finger 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89179081-4	chr15	89178574	89179574	+	984.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	1714.0	NM_001284506	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-125438154-4	chr1	125437660	125438660	+	984.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2433.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36940405-4	chr16	36939919	36940919	+	984.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008225, intron 3 of 13)	intron (NM_008225, intron 3 of 13)	5436.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167691549-4	chr2	167691036	167692036	+	984.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015500, intron 1 of 1)	intron (NR_015500, intron 1 of 1)	359.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96646292-4	chr10	96645818	96646818	+	984.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29317.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-76024842-4	chr13	76024319	76025319	+	984.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6107.0	NM_001131069	218341.0	Mm.266515	NM_178916	ENSMUSG00000043190	Rfesd	AI256775|D030068K09	Rieske (Fe-S) domain containing	protein-coding	20.5	26.5	17.0	10.0	3.0	13.0
Merged-chr5-67823848-4	chr5	67823311	67824311	+	984.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	23620.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	5.0	0.0	1.0	0.0	4.5	7.5
Merged-chr12-32724662-4	chr12	32724148	32725148	+	984.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95687.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44239647-2	chr9	44239147	44240147	+	984.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1030.0	NM_001360344	270150.0	Mm.347681	NM_001081369	ENSMUSG00000070306	Ccdc153	-	coiled-coil domain containing 153	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-130795003-4	chr3	130794483	130795483	+	984.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64585.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69802972-4	chr11	69802483	69803483	+	984.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027913)	promoter-TSS (NR_027913)	-686.0	NR_027913	74341.0	Mm.280165	NR_027913		G630025P09Rik	4632403M07Rik	RIKEN cDNA G630025P09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13662110-10	chr9	13661568	13662568	+	984.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173776)	promoter-TSS (NM_173776)	-392.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166492031-4	chr2	166491523	166492523	+	984.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	44572.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152556844-4	chr1	152556339	152557339	+	984.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 5 of 17)	intron (NM_016846, intron 5 of 17)	68378.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-99763538-3	chr14	99763037	99764037	+	984.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	386259.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0.0	14.0	2.0	9.0	10.5	7.0
Merged-chr17-73971538-4	chr17	73971051	73972051	+	984.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21355.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153900754-2	chr1	153900254	153901254	+	984.3333130000001	f1_balb.idr|f1_c57bl6.idr	TTS (NR_106194)	TTS (NR_106194)	825.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-44988351-8	chr14	44987860	44988860	+	984.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008964, exon 1 of 2)	5' UTR (NM_008964, exon 1 of 2)	249.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-137852440-4	chr1	137851925	137852925	+	984.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-114030.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43040736-4	chr17	43040242	43041242	+	984.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 3 of 5)	RSINE1|SINE|B4	24187.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	18.5	38.5	31.0	15.0	24.0	43.0
Merged-chr4-139235729-3	chr4	139235237	139236237	+	984.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	41626.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	41.5	173.5	122.5	47.5	70.0	72.5
Merged-chr12-3892891-4	chr12	3892381	3893381	+	984.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 1 of 17)	intron (NM_153743, intron 1 of 17)	1137.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50449768-4	chr15	50449281	50450281	+	984.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	439268.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	18.0	14.5	9.0	3.0	9.0	5.0
Merged-chr1-170165101-4	chr1	170164611	170165611	+	984.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133806, intron 2 of 10)	MTEa|LTR|ERVL-MaLR	9853.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79224154-2	chr11	79223654	79224654	+	984.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	18870.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-142508868-4	chr6	142508362	142509362	+	984.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302765)	promoter-TSS (NM_001302765)	-905.0	NM_001316322	16832.0	Mm.9745	NM_008492	ENSMUSG00000030246	Ldhb	AI790582|H-Ldh|LDH-B|LDH-H|Ldh-2|Ldh2	lactate dehydrogenase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122258687-4	chr7	122258179	122259179	+	984.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30446.0	NM_001316672	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129514491-4	chr2	129513962	129514962	+	984.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177653, intron 1 of 6)	intron (NM_177653, intron 1 of 6)	22140.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	84.5	279.5	154.5	78.0	257.5	121.0
Merged-chr2-18765812-4	chr2	18765331	18766331	+	984.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4969.0	NR_126079	100041479.0	Mm.393659	NR_126079	ENSMUSG00000092353	Gm3363	-	predicted gene 3363	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25332482-4	chr17	25331965	25332965	+	984.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13097.0	NM_031187	100503895.0	Mm.3301	NM_031187	ENSMUSG00000024173	Tpsab1	MMCP-7|Mcp-7|Mcp7|Mcpt7	tryptase alpha/beta 1	protein-coding	2.5	1.5	7.5	2.0	12.0	9.0
Merged-chr10-14959288-4	chr10	14958796	14959796	+	984.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	199007.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150217292-4	chr4	150216809	150217809	+	984.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-16174.0	NM_009802	12353.0	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	1.0	5.5	2.0	2.5	5.5	1.0
Merged-chr7-99782162-4	chr7	99781676	99782676	+	984.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15012.0	NM_146356	258353.0	Mm.377450	NM_146356	ENSMUSG00000073997	Olfr521	MOR101-2	olfactory receptor 521	protein-coding	34.5	56.5	20.5	42.5	65.0	30.0
Merged-chr15-30617073-4	chr15	30616584	30617584	+	984.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	MLT1B|LTR|ERVL-MaLR	-422042.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3963838-7	chr11	3963276	3964276	+	984.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022889)	promoter-TSS (NM_022889)	-199.0	NM_022889	64934.0	Mm.28659	NM_022889	ENSMUSG00000020430	Pes1	-	pescadillo ribosomal biogenesis factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121251966-4	chr5	121251371	121252371	+	984.28125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181421, intron 1 of 75)	intron (NM_181421, intron 1 of 75)	31652.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	4.5	30.0	17.0	18.5	12.5	21.5
Merged-chr11-51289799-5	chr11	51289321	51290321	+	984.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153393)	promoter-TSS (NM_153393)	-99.0	NM_153393	237759.0	Mm.154093	NM_153393	ENSMUSG00000063564	Col23a1	2810458L13Rik|AI429655	collagen, type XXIII, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-62840704-4	chr14	62840205	62841205	+	984.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	2984.0	NR_106174	102465889.0		NR_106174	ENSMUSG00000099245	Mir8098	Gm27462|mmu-mir-8098	microRNA 8098	ncRNA	27.5	49.0	30.5	15.0	28.5	27.0
Merged-chr11-83942126-4	chr11	83941693	83942693	+	984.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030096, exon 1 of 15)	exon (NM_030096, exon 1 of 15)	103.0	NM_030096	78394.0	Mm.280544	NM_030096	ENSMUSG00000020677	Ddx52	2700029C06Rik|ROK1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 52	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-56114077-4	chr9	56113591	56114591	+	984.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	24115.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118230150-4	chr11	118229645	118230645	+	984.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-17403.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16002394-4	chr7	16001915	16002915	+	984.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-2920.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129572766-4	chr2	129572266	129573266	+	984.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20073.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	19.0	42.0	23.0	11.0	10.0	16.5
Merged-chr13-55017588-2	chr13	55017057	55018057	+	984.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001206392, intron 1 of 17)	intron (NM_001206392, intron 1 of 17)	3262.0	NM_001206390	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	46.0	131.5	101.0	35.5	61.5	50.0
Merged-chr10-93357666-4	chr10	93357149	93358149	+	984.238098	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	21438.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	6.5	16.5	10.0	65.5	213.0	137.0
Merged-chr11-3172506-7	chr11	3171985	3172985	+	984.228577	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 6 of 32)	B3|SINE|B2	20978.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80963423-3	chr10	80962914	80963914	+	984.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	33323.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121416886-4	chr14	121416402	121417402	+	984.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37672.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73095256-4	chr17	73094757	73095757	+	984.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12728.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122593521-4	chr6	122593025	122594025	+	984.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031159, intron 3 of 7)	intron (NM_031159, intron 3 of 7)	8919.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34278322-4	chr13	34277822	34278822	+	984.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	66860.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182960266-4	chr1	182959763	182960763	+	984.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016928, intron 1 of 3)	intron (NM_016928, intron 1 of 3)	5475.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0.0	0.0	0.0	0.0	5.5	2.5
Merged-chr3-106684963-4	chr3	106684474	106685474	+	984.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039478)	promoter-TSS (NM_001039478)	-13.0	NM_001039478	321000.0	Mm.259638	NM_028081	ENSMUSG00000056260	Lrif1	2010012G17Rik|4933421E11Rik|AI450568	ligand dependent nuclear receptor interacting factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92430912-4	chr16	92430407	92431407	+	984.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-30829.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-127151784-4	chr6	127151267	127152267	+	984.1785890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009829)	promoter-TSS (NM_009829)	-719.0	NM_009829	12444.0	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75876113-4	chr15	75875615	75876615	+	984.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	12608.0	NM_001282443	223645.0		NM_001282443	ENSMUSG00000098678	Mroh6	Gm19570	maestro heat-like repeat family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-142015253-5	chr4	142014728	142015728	+	984.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2670.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-65019493-4	chr13	65018992	65019992	+	984.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13566.0	NM_001083890	238683.0	Mm.295543	NM_001083890	ENSMUSG00000074849	Spata31d1c	4932441B19Rik|Fam75d1c	spermatogenesis associated 31 subfamily D, member 1C	protein-coding	36.5	67.0	38.5	25.0	53.5	61.5
Merged-chr15-6402946-4	chr15	6402444	6403444	+	984.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	16196.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-48331629-3	chr5	48331125	48332125	+	984.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40767.0	NM_025755	66768.0	Mm.29409	NM_025755	ENSMUSG00000029089	Pacrgl	4933428G09Rik	PARK2 co-regulated-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34248928-3	chr17	34248428	34249428	+	984.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10023.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	0.0	1.0	0.0	0.0	6.0	0.0
Merged-chr7-4723865-4	chr7	4723368	4724368	+	984.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177887, exon 4 of 5)	exon (NM_177887, exon 4 of 5)	1214.0	NM_001142792	330460.0	Mm.361851	NM_177887	ENSMUSG00000046456	Tmem150b	A630041N19|Tmem224	transmembrane protein 150B	protein-coding	0.0	0.5	2.0	3.5	2.5	4.5
Merged-chr14-105221249-2	chr14	105220749	105221749	+	984.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37424.0	NM_029561	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-105501095-4	chr14	105500597	105501597	+	984.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045921, intron 1 of 2)	intron (NR_045921, intron 1 of 2)	2309.0	NR_045921	74864.0	Mm.159344	NR_045921	ENSMUSG00000022116	4930449E01Rik	-	RIKEN cDNA 4930449E01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-56197678-4	chr13	56197185	56198185	+	984.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18800.0	NM_001168615	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	2.0	7.5	0.5	3.0	9.0	0.5
Merged-chr2-6713723-4	chr2	6713241	6714241	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	7921.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123393975-4	chr5	123393472	123394472	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177582)	promoter-TSS (NM_177582)	-826.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-45860580-4	chr1	45860087	45861087	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65007.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131548730-4	chr1	131548216	131549216	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20813.0	NM_175382	108900.0	Mm.31278	NM_175382	ENSMUSG00000055184	Fam72a	2700049P18Rik|P17	family with sequence similarity 72, member A	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr4-130520420-4	chr4	130519902	130520902	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53634.0	NM_025998	67149.0	Mm.423029	NM_025998	ENSMUSG00000078532	Nkain1	2610200G18Rik|2810426C15Rik	Na+/K+ transporting ATPase interacting 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-31634045-4	chr12	31633533	31634533	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007530, intron 1 of 6)	RSINE1|SINE|B4	564.0	NM_007530	12033.0	Mm.242379	NM_007530	ENSMUSG00000020650	Bcap29	AW208404|Bap29	B cell receptor associated protein 29	protein-coding	3.5	13.5	7.0	8.0	9.5	10.5
Merged-chr10-78063341-4	chr10	78062833	78063833	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001284199, exon 6 of 6)	exon (NM_001284199, exon 6 of 6)	-6035.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-20992776-4	chr2	20992254	20993254	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1-int|LTR|ERVL-MaLR	23880.0	NR_033225	433408.0	Mm.386941	NR_033225		Gm13375	-	predicted gene 13375	ncRNA	0.0	0.0	0.0	0.0	8.0	0.0
Merged-chr11-23357523-4	chr11	23357043	23358043	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190401, intron 10 of 79)	intron (NM_001190401, intron 10 of 79)	50648.0	NM_001190401	17847.0	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-79284187-4	chr18	79283660	79284660	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-174769.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	8.0	5.5	8.5	2.0	4.5	2.0
Merged-chr15-96593291-4	chr15	96592850	96593850	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166456, intron 4 of 15)	intron (NM_001166456, intron 4 of 15)	48612.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-35827937-4	chr11	35827397	35828397	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025936, intron 3 of 14)	intron (NM_025936, intron 3 of 14)	6631.0	NM_025936	104458.0	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111977793-4	chr10	111977271	111978271	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178610, intron 5 of 9)	intron (NM_178610, intron 5 of 9)	5076.0	NM_178610	52705.0	Mm.34606	NM_178610	ENSMUSG00000063334	Krr1	2610511F02Rik|AI255219|AI428520|D10Ertd773e|Hrb2	KRR1, small subunit (SSU) processome component, homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44351458-4	chr7	44350946	44351946	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034115, intron 23 of 24)	intron (NM_001034115, intron 23 of 24)	23584.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-67568438-4	chr3	67567937	67568937	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14331.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64804185-4	chr5	64803695	64804695	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	CpG	672.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21713629-7	chr19	21713124	21714124	+	984.119019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	60315.0	NM_146096	226016.0	Mm.28796	NM_146096	ENSMUSG00000047368	Abhd17b	5730446C15Rik|Cgi67|Fam108b|Fam108b1	abhydrolase domain containing 17B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5975843-3	chr17	5975332	5976332	+	984.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001113353, exon 2 of 27)	exon (NM_001113353, exon 2 of 27)	246.0	NM_011523	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-14585476-4	chr19	14584981	14585981	+	984.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302951, intron 4 of 19)	intron (NM_001302951, intron 4 of 19)	11732.0	NM_001302951	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120123192-3	chr1	120122762	120123762	+	984.0888669999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172074, intron 1 of 4)	intron (NM_001172074, intron 1 of 4)	2075.0	NM_001172074	73103.0	Mm.271602	NM_028439	ENSMUSG00000026388	3110009E18Rik	-	RIKEN cDNA 3110009E18 gene	protein-coding	32.5	52.0	31.0	20.5	72.5	34.5
Merged-chr16-91045738-2	chr16	91045238	91046238	+	984.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1359.0	NR_152264	67367.0	Mm.347	NM_026110	ENSMUSG00000022974	Paxbp1	1810007M14Rik|C21orf66|Gcfc|Gcfc1|Pax3/7bp	PAX3 and PAX7 binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-37788903-2	chr8	37788400	37789400	+	984.083374	f0_balb.idr|f1_balb.idr	intron (NM_145841, intron 2 of 7)	intron (NM_145841, intron 2 of 7)	463302.0	NR_029884	723860.0		NR_029884	ENSMUSG00000065457	Mir383	Mirn383|mir-383|mmu-mir-383	microRNA 383	ncRNA	0.0	0.0	0.0	3.0	4.5	1.5
Merged-chr4-125132583-2	chr4	125132083	125133083	+	984.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4702.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.0	0.0	0.0	0.0	0.5	2.0
Merged-chr17-43534990-4	chr17	43534496	43535496	+	984.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001254953, exon 3 of 3)	exon (NM_001254953, exon 3 of 3)	8643.0	NM_001254953	100043332.0	Mm.17626	NM_001254953	ENSMUSG00000096140	Ankrd66	AU041848|D730048J04Rik|Gm4368	ankyrin repeat domain 66	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-69635214-4	chr2	69634715	69635715	+	984.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12040.0	NM_028284	72569.0	Mm.252136	NM_028284	ENSMUSG00000063145	Bbs5	1700049I01Rik|2700023J09Rik	Bardet-Biedl syndrome 5 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80652467-4	chr7	80651943	80652943	+	984.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173863, intron 2 of 14)	intron (NM_173863, intron 2 of 14)	16426.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	21.5	21.0	17.0	14.5	31.0	23.0
Merged-chr9-95559945-4	chr9	95559497	95560497	+	984.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198414, exon 1 of 1)	exon (NM_198414, exon 1 of 1)	180.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-52734368-3	chr1	52733862	52734862	+	984.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-7004.0	NM_001357464	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	3.0	9.0	1.0	0.0	2.5	2.0
Merged-chr7-12909669-4	chr7	12909149	12910149	+	984.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001001447)	TTS (NM_001001447)	11840.0	NM_001290441	232878.0	Mm.40706	NM_001001447	ENSMUSG00000054715	Zscan22	AW227621|D530006B18Rik|Hkr2	zinc finger and SCAN domain containing 22	protein-coding	0.0	0.0	0.0	2.5	2.5	0.5
Merged-chr18-39620062-4	chr18	39619567	39620567	+	984.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132822.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-17983370-4	chr13	17982867	17983867	+	984.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9984.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45392227-4	chr13	45391731	45392731	+	984.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153789, intron 2 of 6)	intron (NM_153789, intron 2 of 6)	2489.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-110627828-4	chr13	110627332	110628332	+	984.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	232788.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	5.5	0.0	0.0	0.5	0.5	0.0
Merged-chr7-143686312-4	chr7	143685814	143686814	+	984.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024290)	promoter-TSS (NM_024290)	-439.0	NR_131763	79201.0	Mm.290780	NM_024290	ENSMUSG00000037613	Tnfrsf23	SOB|TNFRSFH23|Tnfrh1|Tnfrsf1al1|mDcTRAILR1|mSOB	tumor necrosis factor receptor superfamily, member 23	protein-coding	3.0	15.5	7.5	3.0	12.5	6.0
Merged-chr19-37436642-4	chr19	37436124	37437124	+	984.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008245, intron 1 of 3)	intron (NM_008245, intron 1 of 3)	1783.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	3.0	20.5	13.0	16.0	24.5	13.5
Merged-chr5-20864762-4	chr5	20864253	20865253	+	984.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172992, intron 1 of 17)	intron (NM_172992, intron 1 of 17)	17371.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129314107-4	chr2	129313607	129314607	+	984.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-4135.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	25.5	28.5	12.5	11.5	51.0	14.5
Merged-chr5-99358186-4	chr5	99357683	99358683	+	984.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-105256.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125088841-6	chr6	125088345	125089345	+	984.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7136.0	NM_001346610	107932.0	Mm.333388	NM_145979	ENSMUSG00000063870	Chd4	9530019N15Rik|AA617397|BC005710|D6Ertd380e|Mi-2beta|mKIAA4075	chromodomain helicase DNA binding protein 4	protein-coding	2.0	12.0	3.5	4.5	9.0	0.5
Merged-chr6-129559438-4	chr6	129558901	129559901	+	984.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18885.0	NM_153590	243655.0	Mm.30968	NM_153590	ENSMUSG00000050241	Klre1	Klre-1|NKG2I	killer cell lectin-like receptor family E member 1	protein-coding	0.5	5.0	2.0	0.0	4.0	0.0
Merged-chr16-31933795-8	chr16	31933266	31934266	+	984.03125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172822)	promoter-TSS (NM_172822)	-85.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86955885-3	chr11	86955378	86956378	+	984.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005341, intron 2 of 4)	intron (NM_001005341, intron 2 of 4)	37884.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173848059-1	chr1	173847559	173848559	+	984.0	f0_balb.idr	Intergenic	Lx|LINE|L1	32128.0	NM_001170853	100040462.0	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	3.0	5.0	1.0	3.0	0.0	2.0
Merged-chr3-82725796-2	chr3	82725296	82726296	+	984.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150687.0	NM_001277170	633285.0	Mm.265114	NM_001146328	ENSMUSG00000033882	Rbm46	EG633285|Gm761	RNA binding motif protein 46	protein-coding	0.0	0.0	2.5	0.0	0.0	0.0
Merged-chr7-4793644-2	chr7	4793144	4794144	+	984.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009081, intron 3 of 4)	CpG-12617	679.0	NM_009081	19943.0	Mm.379002	NM_009081	ENSMUSG00000030432	Rpl28	D7Wsu21e	ribosomal protein L28	protein-coding	2.0	13.0	8.0	2.5	8.5	5.5
Merged-chr2-163535122-4	chr2	163534619	163535619	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312906, intron 1 of 10)	intron (NM_001312906, intron 1 of 10)	6602.0	NR_027970	68314.0	Mm.46190	NM_197983	ENSMUSG00000046840	Hnf4aos	0610008F07Rik	hepatic nuclear factor 4 alpha, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9505183-6	chr18	9504675	9505675	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55021.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	7.0	19.0	3.5	6.0	2.0	18.5
Merged-chr7-34812907-4	chr7	34812384	34813384	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175140)	promoter-TSS (NM_175140)	-173.0	NM_175140	68947.0	Mm.29380	NM_175140	ENSMUSG00000060402	Chst8	1500011J21Rik|AI426009	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	protein-coding	0.0	2.0	0.5	0.0	0.0	1.5
Merged-chr12-32709589-4	chr12	32709095	32710095	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-110740.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80769818-4	chr12	80769331	80770331	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9116.0	NM_001008423	380768.0	Mm.29367	NM_001008423	ENSMUSG00000062961	Ccdc177	Gm1568	coiled-coil domain containing 177	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122647045-2	chr5	122646545	122647545	+	984.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038845, intron 1 of 12)	intron (NM_001038845, intron 1 of 12)	3134.0	NM_001038887	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139208439-4	chr4	139207950	139208950	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	14339.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	109.0	185.0	139.5	52.0	96.0	133.5
Merged-chr10-80606566-2	chr10	80606066	80607066	+	984.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001100606, exon 2 of 2)	exon (NM_001100606, exon 2 of 2)	-2694.0	NR_105877	102465550.0		NR_105877	ENSMUSG00000099283	Mir6912	Gm27990|mmu-mir-6912	microRNA 6912	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34056681-4	chr11	34056163	34057163	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 3 of 20)	intron (NM_010696, intron 3 of 20)	9735.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	5.0	11.5	6.0	10.5	5.5	2.5
Merged-chr17-32966241-3	chr17	32965745	32966745	+	984.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033585)	promoter-TSS (NR_033585)	414.0	NM_153063	224691.0	Mm.328953	NM_153063	ENSMUSG00000053600	Zfp472	KRIM-1|Krim-1A|Krim-1B|Krim1	zinc finger protein 472	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173708115-2	chr2	173707615	173708615	+	984.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6967.0	NR_105758	102465173.0		NR_105758	ENSMUSG00000098588	Mir6340	Gm27909|mmu-mir-6340	microRNA 6340	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-54982729-1	chr1	54982229	54983229	+	984.0	f1_c57bl6.idr	Intergenic	Intergenic	44749.0	NM_031179	81898.0	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	0.0	0.0	6.5	2.5	0.0	7.5
Merged-chr11-60936154-4	chr11	60935657	60936657	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008928, intron 1 of 11)	MIRb|SINE|MIR	4100.0	NM_008928	26397.0	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-101733523-2	chr2	101733038	101734038	+	984.0	f0_balb.idr|f1_balb.idr	intron (NM_001355625, intron 7 of 8)	intron (NM_001355625, intron 7 of 8)	55118.0	NM_001303273	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	32.0	43.5	34.0	12.0	49.0	33.5
Merged-chr7-110715817-4	chr7	110715290	110716290	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52416.0	NM_001276301	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21744667-2	chr14	21744167	21745167	+	984.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001007268, intron 4 of 7)	intron (NM_001007268, intron 4 of 7)	-1788.0	NM_013849	27389.0	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5953541-4	chr19	5953054	5954054	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 6 of 17)	intron (NM_001164057, intron 6 of 17)	10652.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	37.5	43.0	24.5	12.0	17.5	14.0
Merged-chr18-61083248-4	chr18	61082756	61083756	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001146268, exon 23 of 23)	exon (NM_001146268, exon 23 of 23)	-22316.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.5	0.0	3.5	3.0	0.0	4.5
Merged-chr3-146158546-4	chr3	146158059	146159059	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 1 of 13)	B4|SINE|B4	8385.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	9.5	24.5	8.5	6.0	19.5	6.5
Merged-chr6-30402280-1	chr6	30401780	30402780	+	984.0	f0_c57.idr	intron (NM_001311087, intron 1 of 8)	CpG	425.0	NM_001311087	76788.0	Mm.277308	NM_029742	ENSMUSG00000029775	Klhdc10	2410127E18Rik|AI593221|mKIAA0265	kelch domain containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75832469-6	chr10	75831994	75832994	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010361, exon 4 of 5)	exon (NM_010361, exon 4 of 5)	2387.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104359759-2	chr8	104359259	104360259	+	984.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153582, intron 1 of 3)	intron (NM_153582, intron 1 of 3)	19165.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130075090-4	chr5	130074543	130075543	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013837, intron 1 of 5)	intron (NM_013837, intron 1 of 5)	1717.0	NM_013837	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80020206-2	chr7	80019706	80020706	+	984.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4608.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59294827-4	chr4	59294329	59295329	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	34778.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135640175-2	chr3	135639675	135640675	+	984.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 6 of 24)	intron (NM_008689, intron 6 of 24)	51372.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26544573-3	chr17	26544090	26545090	+	984.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16922.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0.0	7.0	0.0	0.0	0.0	4.5
Merged-chr7-83632440-2	chr7	83631963	83632963	+	984.0	f0_c57.idr|f1_balb.idr	intron (NM_023377, intron 1 of 5)	intron (NM_023377, intron 1 of 5)	446.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	0.5	16.5	16.0	13.0	21.5	4.0
Merged-chr9-70740185-4	chr9	70739675	70740675	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007399, exon 5 of 16)	exon (NM_007399, exon 5 of 16)	61193.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-52463691-4	chr18	52463154	52464154	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2039.0	NM_026040	67222.0	Mm.100617	NM_026040	ENSMUSG00000024528	Srfbp1	2810036K01Rik|p49/STRAP	serum response factor binding protein 1	protein-coding	3.5	9.0	2.5	6.0	1.5	7.0
Merged-chr1-138964143-3	chr1	138963643	138964643	+	984.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166501, intron 1 of 21)	intron (NM_001166501, intron 1 of 21)	434.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3915309-2	chr12	3914809	3915809	+	984.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001271753)	TTS (NM_001271753)	23565.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70064457-2	chr14	70063957	70064957	+	984.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12988.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-149220397-3	chr3	149219871	149220871	+	984.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54366.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	2.0	9.0	4.0	13.0	5.0	9.5
Merged-chr6-5361650-2	chr6	5361150	5362150	+	984.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-21736.0	NM_023048	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45267560-4	chr13	45267063	45268063	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3b|LINE|CR1	-122179.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	19.0	95.0	65.5	49.5	104.5	75.0
Merged-chr8-103055424-2	chr8	103054924	103055924	+	984.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-270313.0	NM_009866	12552.0	Mm.1571	NM_009866	ENSMUSG00000031673	Cdh11	Cad11|OSF-4	cadherin 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3936618-4	chr19	3936112	3937112	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019449, intron 3 of 10)	intron (NM_019449, intron 3 of 10)	1426.0	NM_001161428	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124671119-4	chr6	124670620	124671620	+	983.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149320, intron 1 of 11)	intron (NR_149320, intron 1 of 11)	8016.0	NM_145130	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84614201-4	chr12	84613724	84614724	+	983.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008992, intron 3 of 18)	intron (NM_008992, intron 3 of 18)	3242.0	NM_008992	19300.0	Mm.229109	NM_008992	ENSMUSG00000021240	Abcd4	P69r|P70R|Pxmp1l	ATP-binding cassette, sub-family D (ALD), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132977009-4	chr4	132976515	132977515	+	983.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010208, intron 1 of 12)	intron (NM_010208, intron 1 of 12)	2920.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-84015427-4	chr6	84014934	84015934	+	983.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 1 of 54)	intron (NM_001077694, intron 1 of 54)	-3952.0	NM_001310152	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39420035-4	chr10	39419537	39420537	+	983.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	50238.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31905955-4	chr17	31905468	31906468	+	983.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50164.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108726575-4	chr3	108726069	108727069	+	983.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-4270.0	NM_029522	76123.0	Mm.226941	NM_029522	ENSMUSG00000027883	Gpsm2	6230410J09Rik|LGN|Pins	G-protein signalling modulator 2 (AGS3-like, C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-117584685-4	chr6	117584212	117585212	+	983.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	89477.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-150598988-4	chr5	150598488	150599488	+	983.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001362416)	TTS (NM_001362416)	-4463.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117418833-6	chr10	117418339	117419339	+	983.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28596.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	1.5	2.0	1.5	2.0	2.5	4.5
Merged-chr5-114128267-4	chr5	114127754	114128754	+	983.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359940)	promoter-TSS (NM_001359940)	-36.0	NM_001359941	231642.0	Mm.332593	NM_175016	ENSMUSG00000044339	Alkbh2	9530023G02|AU016977|Abh2|mABH2	alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89270537-4	chr3	89270037	89271037	+	983.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009057)	promoter-TSS (NM_009057)	33.0	NM_009057	19729.0	Mm.17958	NM_009057	ENSMUSG00000027953	Slc50a1	MmSWEET1|Rag1ap1|Rga	solute carrier family 50 (sugar transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27356343-4	chr14	27355838	27356838	+	983.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	-5051.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	8.0	21.0	13.0	7.0	20.0	21.5
Merged-chr5-92503550-4	chr5	92503027	92504027	+	983.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	2130.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97278127-4	chr6	97277620	97278620	+	983.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25340.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	5.5	3.0	9.5	1.0	2.5	4.0
Merged-chr1-9548826-4	chr1	9548324	9549324	+	983.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357377, intron 2 of 14)	intron (NM_001357377, intron 2 of 14)	876.0	NM_001357376	76187.0	Mm.28514	NM_175236	ENSMUSG00000025911	Adhfe1	6330565B14Rik|AI043035|Adh8|HOT	alcohol dehydrogenase, iron containing, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57483065-4	chr16	57482598	57483598	+	983.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-66144.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	6.5	15.5	6.0	5.5	26.5	7.5
Merged-chr5-115347764-4	chr5	115347262	115348262	+	983.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007748, intron 2 of 2)	intron (NM_007748, intron 2 of 2)	1193.0	NM_007748	12861.0	Mm.43415	NM_007748	ENSMUSG00000041697	Cox6a1	VIaL	cytochrome c oxidase subunit VIa polypeptide 1	protein-coding	13.5	9.0	3.5	1.5	5.0	2.5
Merged-chr5-141084498-4	chr5	141084006	141085006	+	983.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-83910.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	5.5	33.0	22.5	18.5	28.0	18.0
Merged-chr16-87716529-4	chr16	87716030	87717030	+	983.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 2 of 4)	intron (NM_007520, intron 2 of 4)	17576.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-98406545-3	chr14	98406039	98407039	+	983.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-236774.0	NM_007826	13134.0	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund family transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-81703944-3	chr17	81703440	81704440	+	983.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	34447.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-6774854-4	chr18	6774333	6775333	+	983.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181070, intron 2 of 6)	intron (NM_181070, intron 2 of 6)	9666.0	NM_001278447	19330.0	Mm.132802	NM_181070	ENSMUSG00000073639	Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34606458-4	chr17	34605938	34606938	+	983.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163379, intron 1 of 6)	intron (NM_001163379, intron 1 of 6)	577.0	NM_001163379	55979.0	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	10.5	12.0	3.5	0.0	19.5	9.0
Merged-chr19-16140269-4	chr19	16139774	16140774	+	983.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	7443.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19317500-2	chr7	19317000	19318000	+	983.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7455.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57785955-4	chr10	57785384	57786384	+	983.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021272, intron 2 of 3)	intron (NM_021272, intron 2 of 3)	961.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60638427-4	chr18	60637928	60638928	+	983.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14123.0	NM_177340	104027.0	Mm.252321	NM_177340	ENSMUSG00000043079	Synpo	9030217H17Rik|9130229N11|9330140I15Rik|AW046661	synaptopodin	protein-coding	0.0	2.5	0.5	0.0	2.5	0.5
Merged-chr17-13544206-4	chr17	13543725	13544725	+	983.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045436, intron 2 of 4)	RLTR11B|LTR|ERVK	9869.0	NR_045436	72578.0	Mm.46549	NR_045436	ENSMUSG00000038347	2700054A10Rik	-	RIKEN cDNA 2700054A10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-185277174-3	chr1	185276675	185277675	+	983.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163754, exon 30 of 35)	exon (NM_001163754, exon 30 of 35)	34200.0	NR_035529	100316737.0		NR_035529	ENSMUSG00000105770	Mir664	mir-664|mmu-mir-664	microRNA 664	ncRNA	0.0	0.0	0.0	2.0	1.0	0.0
Merged-chr4-95307302-4	chr4	95306800	95307800	+	983.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-250207.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	9.5	11.5	10.0	0.0	2.0	8.5
Merged-chr6-136718962-4	chr6	136718448	136719448	+	983.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145067, intron 18 of 25)	MER44B|DNA|TcMar-Tigger	-57055.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	12.5	25.0	33.0	0.5	11.0	5.0
Merged-chr7-120851755-4	chr7	120851252	120852252	+	983.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267711, intron 1 of 17)	intron (NM_001267711, intron 1 of 17)	563.0	NM_001267711	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80159243-4	chr10	80158783	80159783	+	983.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_021565)	TTS (NM_021565)	-8556.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-51963427-4	chr9	51962915	51963915	+	983.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001301728, exon 1 of 4)	exon (NM_001301728, exon 1 of 4)	187.0	NM_001301728	14148.0	Mm.1061	NM_007996	ENSMUSG00000032051	Fdx1	-	ferredoxin 1	protein-coding	1.5	0.0	0.5	9.5	0.0	2.5
Merged-chr8-120750772-4	chr8	120750256	120751256	+	983.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301811, intron 6 of 8)	intron (NM_001301811, intron 6 of 8)	12117.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-96849133-3	chr7	96848629	96849629	+	983.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 22 of 32)	L1MA5A|LINE|L1	-47580.0	NR_045874	791381.0	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	-	predicted gene 15413	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-121179058-4	chr2	121178569	121179569	+	983.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110985, intron 6 of 18)	L1_Mur3|LINE|L1	7901.0	NM_001290824	51885.0	Mm.383499	NM_153387	ENSMUSG00000027263	Tubgcp4	4932441P04Rik|76p|D2Ertd435e|GCP-4	tubulin, gamma complex associated protein 4	protein-coding	26.0	39.5	14.5	27.5	29.5	18.0
Merged-chr1-33873772-4	chr1	33873263	33874263	+	983.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 3 of 6)	intron (NM_177235, intron 3 of 6)	33858.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-5809453-4	chr5	5808959	5809959	+	983.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60142.0	NM_027399	70358.0	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-24271793-7	chr19	24271233	24272233	+	983.785706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008044, intron 3 of 4)	intron (NM_008044, intron 3 of 4)	8853.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	2.5	27.0	16.0	6.0	25.0	16.5
Merged-chr2-131171588-3	chr2	131171085	131172085	+	983.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027641, exon 7 of 7)	3' UTR (NM_027641, exon 7 of 7)	3225.0	NM_027641	70997.0	Mm.252722	NM_027641	ENSMUSG00000027329	Spef1	4931426K16Rik|Clamp	sperm flagellar 1	protein-coding	0.0	0.5	0.0	13.0	14.5	10.5
Merged-chr8-40961916-4	chr8	40961403	40962403	+	983.758301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026840, intron 2 of 5)	intron (NM_026840, intron 2 of 5)	35670.0	NM_026840	68797.0	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	6.0	0.0	4.0	2.0	0.0	2.0
Merged-chr5-135913403-4	chr5	135912892	135913892	+	983.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018871, intron 1 of 1)	MTD|LTR|ERVL-MaLR	21249.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108537483-4	chr3	108536987	108537987	+	983.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029314)	promoter-TSS (NM_029314)	-97.0	NM_029314	75504.0	Mm.271255	NM_029314	ENSMUSG00000027886	1700013F07Rik	-	RIKEN cDNA 1700013F07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-50498535-4	chr2	50498037	50499037	+	983.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13C2|LTR|ERVK	143512.0	NR_154590	102634280.0		NR_154590		Gm48908	-	predicted gene 48908	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94116470-4	chr10	94115962	94116962	+	983.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 8 of 20)	intron (NM_053072, intron 8 of 20)	-31469.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	3.0	5.5	7.5	3.0	7.5	5.5
Merged-chr12-111696522-4	chr12	111696016	111697016	+	983.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16437.0	NM_001324481	70369.0	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-100641307-4	chr3	100640799	100641799	+	983.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010763, intron 5 of 12)	intron (NM_010763, intron 5 of 12)	44174.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-14534128-4	chr7	14533643	14534643	+	983.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045120, intron 12 of 12)	intron (NR_045120, intron 12 of 12)	28028.0	NM_001244031	627280.0	Mm.372763	NM_001039146	ENSMUSG00000100586	Vmn1r90	B430211C08Rik	vomeronasal 1 receptor 90	protein-coding	18.5	11.0	15.5	0.0	17.5	4.5
Merged-chr11-105592086-4	chr11	105591565	105592565	+	983.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181071, intron 1 of 25)	intron (NM_181071, intron 1 of 25)	2079.0	NM_181071	77097.0	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-42576107-6	chr13	42575537	42576537	+	983.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104762.0	NM_001302635	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.0	0.0	3.0	0.0	0.0	0.0
Merged-chr1-165770933-2	chr1	165770433	165771433	+	983.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_149310, intron 4 of 4)	intron (NR_149310, intron 4 of 4)	7175.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86170401-4	chr15	86169908	86170908	+	983.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-15320.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147434130-2	chr4	147433630	147434630	+	983.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	RMER17C|LTR|ERVK	-119147.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5445588-4	chr17	5445098	5446098	+	983.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5338.0	NM_027457	70544.0	Mm.46654	NM_027457	ENSMUSG00000004945	Tmem242	1110008A10Rik|2310046K16Rik|5730437N04Rik	transmembrane protein 242	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4269212-3	chr19	4268728	4269728	+	983.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356620)	promoter-TSS (NM_001356620)	5.0	NM_001356620	245857.0	Mm.248388	NM_198113	ENSMUSG00000034616	Ssh3	SSH-3|SSH-3L	slingshot protein phosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-19027398-3	chr11	19026904	19027904	+	983.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-8435.0	NM_010789	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11219515-3	chr8	11219003	11220003	+	983.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009931, intron 33 of 51)	intron (NM_009931, intron 33 of 51)	-93302.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121370575-4	chr3	121370070	121371070	+	983.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55971.0	NM_028044	71994.0	Mm.275555	NM_028044	ENSMUSG00000053931	Cnn3	1600014M03Rik|C85854|Calpo3	calponin 3, acidic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100743475-4	chr15	100742981	100743981	+	983.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-10744.0	NR_045782	619313.0	Mm.123436	NR_045781	ENSMUSG00000116504	I730030J21Rik	-	RIKEN cDNA I730030J21 gene	ncRNA	0.0	5.5	2.0	0.0	8.0	0.0
Merged-chr11-101253770-4	chr11	101253282	101254282	+	983.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284414)	promoter-TSS (NM_001284414)	75.0	NM_026776	28084.0	Mm.301020	NM_026776	ENSMUSG00000078656	Vps25	1110020N13Rik|AW107467|D11Wsu68e	vacuolar protein sorting 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-66346140-4	chr8	66345639	66346639	+	983.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 4 of 7)	Lx5|LINE|L1	-40162.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-72170726-4	chr2	72170228	72171228	+	983.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355478, intron 3 of 26)	ORR1B2|LTR|ERVL-MaLR	-114909.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	12.5	13.0	8.5	1.0	12.0	4.5
Merged-chr10-125995069-4	chr10	125994579	125995579	+	983.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177152, intron 4 of 18)	ORR1E|LTR|ERVL-MaLR	28860.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	1.5	10.0	0.0	0.0	0.0	0.0
Merged-chr11-95042307-4	chr11	95041802	95042802	+	983.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133667)	promoter-TSS (NM_133667)	-931.0	NM_133667	18604.0	Mm.29768	NM_133667	ENSMUSG00000038967	Pdk2	-	pyruvate dehydrogenase kinase, isoenzyme 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88333628-6	chr10	88333114	88334114	+	983.677795	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 4 of 6)	intron (NM_027878, intron 4 of 6)	23461.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97363519-4	chr11	97363020	97364020	+	983.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138657, intron 1 of 9)	intron (NM_138657, intron 1 of 9)	969.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152178800-2	chr4	152178300	152179300	+	983.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_133348, intron 1 of 8)	CpG	700.0	NM_133348	70025.0	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-129914216-4	chr5	129913723	129914723	+	983.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001359308)	TTS (NM_001359308)	5683.0	NM_026916	69034.0	Mm.211372	NM_026916	ENSMUSG00000095789	Nupr1l	1810010E01Rik|4930579G22Rik|Nupr2	nuclear protein transcriptional regulator 1 like	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr7-121047467-2	chr7	121046967	121047967	+	983.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_021554, intron 1 of 4)	B2_Mm2|SINE|B2	13022.0	NM_021554	59052.0	Mm.29122	NM_021554	ENSMUSG00000030876	Mettl9	0610012D09Rik|AA517660|Drev|MNCb-5680	methyltransferase like 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106099349-4	chr1	106098852	106099852	+	983.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72172.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70869670-4	chr8	70869186	70870186	+	983.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026964, intron 2 of 4)	intron (NM_026964, intron 2 of 4)	3804.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	0.0	1.0	1.0	0.0	2.5	0.5
Merged-chr3-139025266-4	chr3	139024774	139025774	+	983.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 2 of 13)	intron (NM_001356388, intron 2 of 13)	49927.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	35.0	94.0	23.0	22.0	39.0	34.5
Merged-chr19-40895230-3	chr19	40894757	40895757	+	983.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_106167)	TTS (NR_106167)	552.0	NM_028319	72672.0	Mm.313523	NM_028319	ENSMUSG00000049164	Zfp518a	2810401C22Rik|6330417C12Rik|AI426493|Zfp518|Znf518|Znf518a|mKIAA0335	zinc finger protein 518A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-14577121-4	chr1	14576626	14577626	+	983.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	178840.0	NM_001360810	17681.0	Mm.5820	NM_010827	ENSMUSG00000025930	Msc	MyoR|bHLHa22	musculin	protein-coding	1.5	3.0	0.0	5.5	1.5	1.0
Merged-chr19-36375459-6	chr19	36374940	36375940	+	983.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3627.0	NM_029508	76073.0	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80069521-7	chr7	80068935	80069935	+	983.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045695, intron 2 of 2)	intron (NR_045695, intron 2 of 2)	5822.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	4.5	18.5	23.0	15.5	40.5	24.5
Merged-chr14-27178362-3	chr14	27177853	27178853	+	983.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	intron (NM_001289686, intron 2 of 12)	34360.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94392558-1	chr11	94392058	94393058	+	983.6666869999999	f0_c57.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	418.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	61.5	128.5	85.0	59.5	112.0	95.5
Merged-chr4-150589225-3	chr4	150588739	150589739	+	983.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	62935.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73160950-3	chr2	73160465	73161465	+	983.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030091, intron 4 of 7)	ORR1D2|LTR|ERVL-MaLR	53482.0	NM_030091	67059.0	Mm.22661	NM_025942	ENSMUSG00000027108	Ola1	2510025G09Rik|2810405J23Rik|2810409H07Rik|Gtpbp9|PTD004	Obg-like ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75283842-2	chr14	75283342	75284342	+	983.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026083)	promoter-TSS (NM_026083)	-524.0	NM_001359875	67302.0	Mm.74704	NM_026083	ENSMUSG00000022000	Zc3h13	2600010B19Rik|3110050K21Rik|4930570G11Rik|C87618	zinc finger CCCH type containing 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100108086-4	chr13	100107602	100108602	+	983.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011353)	promoter-TSS (NM_011353)	83.0	NM_011353	20365.0	Mm.286177	NM_011353	ENSMUSG00000021643	Serf1	4F5|Msmac1|m4F5	small EDRK-rich factor 1	protein-coding	13.0	3.0	0.0	0.5	0.0	0.5
Merged-chr17-46892708-4	chr17	46892206	46893206	+	983.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178385)	TTS (NM_178385)	2085.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88191277-4	chr3	88190762	88191762	+	983.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13477.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83317605-4	chr6	83317060	83318060	+	983.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008638)	promoter-TSS (NM_008638)	44.0	NM_008638	17768.0	Mm.443	NM_008638	ENSMUSG00000005667	Mthfd2	AW558851|NMDMC	methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98389971-4	chr15	98389481	98390481	+	983.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8464.0	NR_015496	73302.0	Mm.272760	NR_015496	ENSMUSG00000099353	1700031M16Rik	4930413L20Rik	RIKEN cDNA 1700031M16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3719605-4	chr19	3719162	3720162	+	983.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11251.0	NM_001358257	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-75767814-4	chr16	75767333	75768333	+	983.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-1015.0	NM_030201	110920.0	Mm.26704	NM_030201	ENSMUSG00000032932	Hspa13	1600002I10Rik|AV006182|B230217N24Rik|Stch	heat shock protein 70 family, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-14959612-3	chr10	14959120	14960120	+	983.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	199331.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-137833306-4	chr3	137832804	137833804	+	983.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31183.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	1.5	6.5	2.0	0.0	0.0	3.5
Merged-chr15-103393746-4	chr15	103393256	103394256	+	983.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26965.0	NM_001314041	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107892175-4	chr13	107891683	107892683	+	983.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2119.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.0	0.0	1.5	13.0	81.0	41.0
Merged-chr4-141545130-4	chr4	141544609	141545609	+	983.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1053.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	76.0	119.0	116.5	76.5	156.5	114.5
Merged-chr10-80922100-4	chr10	80921639	80922639	+	983.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3894.0	NM_010722	16907.0	Mm.7362	NM_010722	ENSMUSG00000062075	Lmnb2	-	lamin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95053973-4	chr4	95053440	95054440	+	983.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1718.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	23.0	137.0	49.0	29.5	81.0	46.0
Merged-chr10-59328041-4	chr10	59327529	59328529	+	983.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316370, intron 1 of 13)	intron (NM_001316370, intron 1 of 13)	4733.0	NM_001316370	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67369809-4	chr18	67369307	67370307	+	983.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20924.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	1.0	4.0	0.5	1.0	0.0	0.0
Merged-chr11-106429841-4	chr11	106429358	106430358	+	983.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 4 of 21)	intron (NM_023913, intron 4 of 21)	-47077.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77626655-4	chr15	77626164	77627164	+	983.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16622.0	NM_001143686	328563.0	Mm.17957	NM_001143686	ENSMUSG00000091694	Apol11b	A330102K04Rik	apolipoprotein L 11b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120493287-4	chr9	120492748	120493748	+	983.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026892, intron 1 of 3)	intron (NM_026892, intron 1 of 3)	642.0	NM_026892	68969.0	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117119338-8	chr11	117118795	117119795	+	983.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 2 of 16)	RSINE1|SINE|B4	4123.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130295690-3	chr2	130295170	130296170	+	983.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110513)	promoter-TSS (NM_001110513)	-269.0	NM_001110513	228598.0	Mm.32582	NM_152993	ENSMUSG00000053552	Ebf4	Ebf3|O/E-4|Olf-1	early B cell factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34133314-4	chr7	34132814	34133814	+	983.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207212)	promoter-TSS (NM_207212)	-46.0	NM_207212	101543.0	Mm.422738	NM_207212	ENSMUSG00000036459	Wtip	-	WT1-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40650286-4	chr19	40649794	40650794	+	983.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	L1MC3|LINE|L1	-9476.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	7.0	33.0	18.0	21.5	30.5	13.5
Merged-chr12-101758847-4	chr12	101758370	101759370	+	983.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361987, intron 9 of 10)	intron (NM_001361987, intron 9 of 10)	-40347.0	NM_001082976	74413.0	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-52453190-4	chr16	52452691	52453691	+	983.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331110)	promoter-TSS (NM_001331110)	-110.0	NM_001331110	11658.0	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153292625-6	chr2	153292133	153293133	+	983.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008444, intron 1 of 8)	intron (NM_008444, intron 1 of 8)	1217.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-42693068-4	chr6	42692570	42693570	+	983.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029930)	promoter-TSS (NM_029930)	30.0	NM_029930	77574.0	Mm.24652	NM_029930	ENSMUSG00000036667	Tcaf1	2810407D09Rik|3321401G04Rik|A230020K05Rik|AI848529|Fam115a	TRPM8 channel-associated factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55122146-4	chr14	55121643	55122643	+	983.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5208.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59392180-3	chr15	59391619	59392619	+	983.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 2 of 4)	intron (NM_001164604, intron 2 of 4)	17921.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126320645-2	chr4	126320145	126321145	+	983.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133883, intron 1 of 5)	intron (NM_133883, intron 1 of 5)	1058.0	NM_133883	100206.0	Mm.11285	NM_133883	ENSMUSG00000042558	Adprhl2	AI836109|Arh3	ADP-ribosylhydrolase like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119818029-4	chr13	119817537	119818537	+	983.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	12180.0	NM_001001449	380878.0	Mm.327311	NM_001001449	ENSMUSG00000094237	AF067063	-	cDNA sequence AF067063	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107466138-4	chr11	107465631	107466631	+	983.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	B4|SINE|B4	4589.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	1.0	1.5	2.0	0.5	2.0	1.0
Merged-chr8-55348178-2	chr8	55347678	55348678	+	983.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	393450.0	NM_001253756	234267.0	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81322651-2	chr10	81322151	81323151	+	983.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_027381, exon 2 of 9)	exon (NM_027381, exon 2 of 9)	1548.0	NM_027381	70312.0	Mm.87628	NM_027381	ENSMUSG00000034889	Cactin	2510012J08Rik	cactin, spliceosome C complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4963515-2	chr16	4963015	4964015	+	983.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271586)	promoter-TSS (NM_001271586)	722.0	NM_028301	72615.0	Mm.290628	NM_028301	ENSMUSG00000022515	Anks3	2700067D09Rik|C81345|mKIAA1977	ankyrin repeat and sterile alpha motif domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154246584-2	chr4	154245980	154246980	+	983.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162977, intron 5 of 36)	intron (NM_001162977, intron 5 of 36)	53415.0	NM_001112744	230972.0	Mm.38481	NM_001112744	ENSMUSG00000029032	Arhgef16	-	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding	0.0	0.0	2.0	2.0	6.5	0.0
Merged-chr4-46391561-2	chr4	46391061	46392061	+	983.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2124.0	NM_001347095	74753.0	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	0.0	0.0	0.0	3.0	11.0	1.5
Merged-chr17-56468394-2	chr17	56467894	56468894	+	983.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252455, intron 1 of 27)	intron (NM_001252455, intron 1 of 27)	-6173.0	NM_001252456	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3349091-2	chr12	3348591	3349591	+	983.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CATA)n|Simple_repeat|Simple_repeat	-16041.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25215403-4	chr12	25214896	25215896	+	983.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86222.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21643352-2	chr16	21642852	21643852	+	983.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 46 of 46)	intron (NM_001081366, intron 46 of 46)	51313.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-14784690-2	chr18	14784183	14785183	+	983.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001100449, intron 1 of 14)	intron (NM_001100449, intron 1 of 14)	1438.0	NM_001100449	72504.0	Mm.312233	NM_001100449	ENSMUSG00000054321	Taf4b	105kDa|2610524B04Rik|4932409F03Rik|AW987595|TAFII-105|TAFII105|Taf2c2	TATA-box binding protein associated factor 4b	protein-coding	4.5	0.5	2.0	2.0	0.0	8.0
Merged-chr13-90089125-4	chr13	90088625	90089625	+	983.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025335)	promoter-TSS (NM_025335)	483.0	NM_028012	108138.0	Mm.37531	NM_028012	ENSMUSG00000021615	Xrcc4	2310057B22Rik|AW413319|AW545101	X-ray repair complementing defective repair in Chinese hamster cells 4	protein-coding	37.5	47.5	37.5	16.0	50.0	51.0
Merged-chr16-10300915-2	chr16	10300415	10301415	+	983.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007929, intron 1 of 4)	intron (NM_007929, intron 1 of 4)	13053.0	NM_007929	13731.0	Mm.246009	NM_007929	ENSMUSG00000022505	Emp2	XMP	epithelial membrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137741447-6	chr5	137740894	137741894	+	983.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347505)	promoter-TSS (NM_001347505)	-226.0	NM_001347505	243300.0	Mm.74750	NM_175521	ENSMUSG00000045348	Nyap1	6430598A04Rik	neuronal tyrosine-phosphorylated phosphoinositide 3-kinase adaptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-16011378-2	chr13	16010878	16011878	+	983.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008380)	promoter-TSS (NM_008380)	-473.0	NM_008380	16323.0	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-52764240-4	chr1	52763746	52764746	+	983.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36888.0	NM_001357464	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	11.0	33.0	26.0	15.0	28.5	14.0
Merged-chr8-126768804-2	chr8	126768304	126769304	+	983.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-80216.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60852057-4	chr2	60851586	60852586	+	983.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	29352.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19921095-4	chr7	19920592	19921592	+	983.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027514)	promoter-TSS (NM_027514)	51.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-52835326-2	chr5	52834826	52835826	+	983.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024213, intron 1 of 27)	B3|SINE|B2	1191.0	NM_024213	52206.0	Mm.272568	NM_024213	ENSMUSG00000029176	Anapc4	2610306D21Rik|APC4|D5Ertd249e	anaphase promoting complex subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-19316362-4	chr2	19315858	19316858	+	983.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A-int|LTR|ERVK	-27959.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115593419-2	chr6	115592919	115593919	+	983.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001101431)	promoter-TSS (NM_001101431)	-843.0	NM_001101431	70291.0	Mm.133694	NM_001101431	ENSMUSG00000068011	Mkrn2os	2510049J12Rik	makorin, ring finger protein 2, opposite strand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58478615-4	chr13	58478117	58479117	+	983.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75274.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111744227-4	chr12	111743722	111744722	+	983.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163388, intron 4 of 5)	intron (NM_001163388, intron 4 of 5)	-14627.0	NM_001361612	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59452688-4	chr4	59452185	59453185	+	983.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR40|LTR|ERVK	-14052.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-32168395-4	chr14	32167904	32168904	+	983.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019744, intron 1 of 9)	intron (NM_019744, intron 1 of 9)	2615.0	NM_019744	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76408380-4	chr16	76407878	76408878	+	983.4249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR42-int|LTR|ERVK	-34551.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-16538207-4	chr5	16537723	16538723	+	983.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15272.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126201880-4	chr4	126201388	126202388	+	983.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356456)	promoter-TSS (NM_001356456)	822.0	NM_001356455	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	100.5	339.0	143.5	101.0	253.5	173.5
Merged-chr10-24641574-4	chr10	24641080	24642080	+	983.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008813, exon 25 of 25)	3' UTR (NM_008813, exon 25 of 25)	46138.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-68978843-4	chr2	68978350	68979350	+	983.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 3 of 10)	intron (NM_001347161, intron 3 of 10)	117409.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78894810-2	chr15	78894308	78895308	+	983.416626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145929)	TTS (NM_145929)	2968.0	NR_105920	102466210.0		NR_105920	ENSMUSG00000099267	Mir6955	Gm27769|mmu-mir-6955	microRNA 6955	ncRNA	11.5	29.5	2.5	7.5	6.0	1.5
Merged-chr14-61744135-3	chr14	61743622	61744622	+	983.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-61749.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	3.5	6.5	2.0	5.5	10.0	11.0
Merged-chr8-11113434-3	chr8	11112936	11113936	+	983.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105006.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55351233-3	chr4	55350667	55351667	+	983.388855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009011, intron 1 of 9)	intron (NM_009011, intron 1 of 9)	1125.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	66.0	177.5	191.0	57.0	117.5	129.5
Merged-chr14-55677701-4	chr14	55677185	55678185	+	983.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177992, intron 8 of 9)	intron (NM_177992, intron 8 of 9)	4132.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143466419-4	chr7	143465898	143466898	+	983.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5348.0	NM_001161624	12577.0	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127587277-4	chr2	127586806	127587806	+	983.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029963)	promoter-TSS (NM_029963)	-120.0	NM_029963	77721.0	Mm.274601	NM_029963	ENSMUSG00000027374	Mrps5	1620401I16Rik|AI850294	mitochondrial ribosomal protein S5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31152327-4	chr2	31151794	31152794	+	983.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040334)	promoter-TSS (NR_040334)	-3.0	NR_040334	320973.0	Mm.384284	NR_040334		D330023K18Rik	-	RIKEN cDNA D330023K18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-13532741-2	chr17	13532241	13533241	+	983.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_045437, intron 2 of 3)	intron (NR_045437, intron 2 of 3)	11285.0	NR_030763	272667.0	Mm.444718	NR_030763	ENSMUSG00000079711	Smok4a	4930513D10Rik|Smok2c	sperm motility kinase 4A	pseudo	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr9-113991066-2	chr9	113990566	113991566	+	983.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_178624, intron 5 of 14)	intron (NM_178624, intron 5 of 14)	35685.0	NM_178624	72179.0	Mm.386808	NM_178624	ENSMUSG00000032507	Fbxl2	2810423A21Rik|Fbl3	F-box and leucine-rich repeat protein 2	protein-coding	1.0	0.0	1.0	1.0	0.0	0.5
Merged-chr4-141618677-4	chr4	141618162	141619162	+	983.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145987)	promoter-TSS (NM_145987)	-29.0	NR_151462	213989.0	Mm.34891	NM_145987	ENSMUSG00000043085	Tmem82	-	transmembrane protein 82	protein-coding	4.5	6.5	5.0	3.5	6.0	2.5
Merged-chr6-149357293-4	chr6	149356785	149357785	+	983.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB3_1-LTR_MM|LTR|ERVK	47871.0	NM_001289662	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75150880-4	chr11	75150397	75151397	+	983.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 15 of 18)	B4A|SINE|B4	17255.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-78397120-4	chr2	78396618	78397618	+	983.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	159571.0	NM_177843	329436.0	Mm.235448	NM_177843		Gm14461	A830093M07	predicted gene 14461	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-113430318-4	chr11	113429818	113430818	+	983.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027216, intron 5 of 9)	MLT1C|LTR|ERVL-MaLR	135497.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	10.0	2.0	2.5	10.5	15.0	14.0
Merged-chr3-121602267-4	chr3	121601783	121602783	+	983.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41202.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-36094327-3	chr4	36093824	36094824	+	983.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165999, intron 5 of 7)	intron (NM_001165999, intron 5 of 7)	-249120.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	0.0	0.0	1.0	0.0	2.5	0.0
Merged-chr14-45080014-4	chr14	45079517	45080517	+	983.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR1a|LTR|Gypsy	91906.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145098589-4	chr7	145098067	145099067	+	983.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109552.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	0.0	1.0	3.5	0.0	4.0	6.0
Merged-chr6-38913103-4	chr6	38912605	38913605	+	983.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5881.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62343136-4	chr9	62342587	62343587	+	983.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 1 of 6)	CpG	1744.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80713011-4	chr18	80712539	80713539	+	983.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164109)	promoter-TSS (NM_001164109)	32.0	NM_001164109	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39458994-4	chr10	39458488	39459488	+	983.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122893, intron 3 of 13)	intron (NM_001122893, intron 3 of 13)	89189.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31382580-4	chr14	31382072	31383072	+	983.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 3 of 7)	intron (NM_001347585, intron 3 of 7)	35105.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120515694-4	chr11	120515164	120516164	+	983.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15063.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28430715-4	chr7	28430221	28431221	+	983.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175021, intron 1 of 12)	intron (NM_175021, intron 1 of 12)	5470.0	NM_175021	233033.0	Mm.54120	NM_175021	ENSMUSG00000109336	Samd4b	BC042901	sterile alpha motif domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-7217220-4	chr15	7216709	7217709	+	983.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289496, intron 20 of 22)	intron (NM_001289496, intron 20 of 22)	76667.0	NM_013584	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88637791-4	chr8	88637290	88638290	+	983.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1662.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	0.0	6.0	4.0	7.5	9.0	2.0
Merged-chr16-38701979-4	chr16	38701474	38702474	+	983.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	11061.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40851692-4	chr4	40851190	40852190	+	983.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	-1552.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-114885360-3	chr13	114884856	114885856	+	983.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008396, intron 3 of 29)	intron (NM_008396, intron 3 of 29)	46744.0	NM_008396	16398.0	Mm.5007	NM_008396	ENSMUSG00000015533	Itga2	CD49B|DX5|GPIa	integrin alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88278302-6	chr1	88277794	88278794	+	983.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198652)	promoter-TSS (NM_198652)	-715.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-56912897-3	chr10	56912396	56913396	+	983.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	480915.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86203552-5	chr15	86203049	86204049	+	983.2666630000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10910.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77517195-4	chr10	77516692	77517692	+	983.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1379.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3158787-4	chr11	3158326	3159326	+	983.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 10 of 32)	B1_Mur1|SINE|Alu	34637.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10996701-4	chr16	10996188	10997188	+	983.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-3567.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-93771709-4	chr13	93771135	93772135	+	983.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009712)	promoter-TSS (NM_009712)	-44.0	NM_009712	11881.0	Mm.300178	NM_009712	ENSMUSG00000042082	Arsb	1110007C02Rik|AI480648|As-1|As-1r|As-1s|As-1t|As1|As1-r|As1-s|As1-t|Asr-1|Ast-1	arylsulfatase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-4922823-4	chr17	4922311	4923311	+	983.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72263.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-97511034-5	chr13	97510552	97511552	+	983.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28351.0	NR_110431	100039691.0	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55230619-2	chr19	55230119	55231119	+	983.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 5 of 20)	intron (NM_001081076, intron 5 of 20)	10617.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9027997-4	chr4	9027497	9028497	+	983.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-241296.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0.0	0.0	0.5	1.5	3.5	0.0
Merged-chr5-64412567-4	chr5	64412055	64413055	+	983.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55387.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	8.5	20.0	10.5	8.0	33.5	12.5
Merged-chr16-49939100-4	chr16	49938590	49939590	+	983.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16740.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-22165816-4	chr10	22165302	22166302	+	983.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359809, intron 1 of 7)	intron (NM_001359809, intron 1 of 7)	7193.0	NM_009016	19368.0	Mm.458004	NM_009016		Raet1a	RAE-1alpha|Rae1alpha|Raet1	retinoic acid early transcript 1, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-76132244-4	chr5	76131753	76132753	+	983.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8020.0	NM_020611	57357.0	Mm.289446	NM_020611	ENSMUSG00000029233	Srd5a3	1110025P14Rik|A430076C09|AV364670|AW987574|D730040M03Rik|H5ar|S5AR 3|Srd5a2l	steroid 5 alpha-reductase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168978238-4	chr2	168977743	168978743	+	983.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040326)	promoter-TSS (NR_040326)	-26.0	NR_040326	75508.0	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	3.5	2.0	2.5	0.0	0.0	0.0
Merged-chr11-50237569-2	chr11	50237069	50238069	+	983.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313968, intron 1 of 4)	intron (NM_001313968, intron 1 of 4)	963.0	NM_001313968	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75092318-4	chr11	75091802	75092802	+	983.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 13 of 18)	intron (NM_001002764, intron 13 of 18)	-26311.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98761320-4	chr15	98760824	98761824	+	983.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007478, intron 1 of 4)	intron (NM_007478, intron 1 of 4)	1668.0	NM_001355510	11842.0	Mm.221298	NM_007478	ENSMUSG00000051853	Arf3	5430400P17Rik|AI854770	ADP-ribosylation factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32818735-4	chr18	32818249	32819249	+	983.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021367, intron 4 of 4)	intron (NM_021367, intron 4 of 4)	1889.0	NR_033206	53603.0	Mm.143716	NM_021367	ENSMUSG00000024379	Tslp	-	thymic stromal lymphopoietin	protein-coding	27.5	49.0	67.0	36.5	31.5	28.5
Merged-chr1-54438963-4	chr1	54438460	54439460	+	983.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033194)	promoter-TSS (NM_001033194)	66.0	NM_001033194	98488.0	Mm.25856	NM_001033194	ENSMUSG00000041303	Gtf3c3	TF3C-gamma|TFIIIC102	general transcription factor IIIC, polypeptide 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-41563365-4	chr3	41562858	41563858	+	983.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172303)	promoter-TSS (NM_172303)	-25.0	NM_172303	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180423478-4	chr1	180423030	180424030	+	983.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081175, exon 8 of 8)	3' UTR (NM_001081175, exon 8 of 8)	59974.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122870120-4	chr6	122869628	122870628	+	983.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4429.0	NM_026267	67602.0	Mm.288114	NM_026267	ENSMUSG00000030327	Necap1	1200016B17Rik|AI747569|mFLJ00061	NECAP endocytosis associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12990926-4	chr17	12990420	12991420	+	983.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175394, intron 1 of 5)	B3|SINE|B2	1339.0	NM_001113533	60532.0	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47918696-4	chr19	47918189	47919189	+	983.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001738, intron 1 of 1)	intron (NM_001001738, intron 1 of 1)	610.0	NM_001001738	414801.0	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	59.5	116.5	80.5	38.5	112.5	78.5
Merged-chr16-93683152-4	chr16	93682629	93683629	+	983.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173047)	promoter-TSS (NM_173047)	-90.0	NM_173047	109857.0	Mm.4512	NM_173047	ENSMUSG00000022947	Cbr3	1110001J05Rik|C81353	carbonyl reductase 3	protein-coding	10.5	9.0	8.5	9.0	7.0	9.5
Merged-chr19-59042884-4	chr19	59042380	59043380	+	983.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 3 of 16)	intron (NM_001114312, intron 3 of 16)	33189.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17770743-4	chr6	17770258	17771258	+	983.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	intron (NM_022332, intron 1 of 15)	21588.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102424911-4	chr11	102424404	102425404	+	983.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5418.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92019522-4	chr16	92019012	92020012	+	983.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-38810.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55024421-4	chr13	55023905	55024905	+	983.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3020.0	NM_001033245	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	9.5	2.5	4.0	3.5	20.0	14.5
Merged-chr10-117941051-5	chr10	117940494	117941494	+	983.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045342, intron 3 of 3)	intron (NR_045342, intron 3 of 3)	15535.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	94.0	192.0	173.0	75.0	151.5	160.0
Merged-chr14-51896023-3	chr14	51895527	51896527	+	983.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001039676, exon 4 of 4)	3' UTR (NM_001039676, exon 4 of 4)	2417.0	NM_001039676	214922.0	Mm.281343	NM_001039676	ENSMUSG00000072572	Slc39a2	F730005G13Rik|Gm1789|Gm289|Zip2	solute carrier family 39 (zinc transporter), member 2	protein-coding	18.5	3.0	1.0	26.0	18.0	13.5
Merged-chr19-10818715-4	chr19	10818220	10819220	+	983.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009852, intron 1 of 12)	intron (NM_009852, intron 1 of 12)	11338.0	NM_001037801	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38939273-4	chr6	38938766	38939766	+	983.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	intron (NM_011539, intron 1 of 12)	20280.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-71006282-4	chr12	71005767	71006767	+	983.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045055, intron 3 of 3)	intron (NR_045055, intron 3 of 3)	9556.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	6.5	5.0	15.0	5.0	1.5	7.5
Merged-chr11-20301563-2	chr11	20301063	20302063	+	983.1666869999999	f1_balb.idr|f1_c57bl6.idr	TTS (NM_018861)	TTS (NM_018861)	31150.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91361439-4	chr2	91360948	91361948	+	983.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175123, intron 3 of 8)	intron (NM_175123, intron 3 of 8)	83266.0	NM_001311144	228356.0	Mm.386861	NM_175123	ENSMUSG00000040591	1110051M20Rik	AI586322	RIKEN cDNA 1110051M20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65864848-2	chr5	65864348	65865348	+	983.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	1279.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	28.5	78.0	26.0	28.5	78.5	26.0
Merged-chr11-21549958-4	chr11	21549462	21550462	+	983.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21972.0	NM_008618	17449.0	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	17.5	55.0	29.5	22.5	37.5	32.5
Merged-chr17-35065044-4	chr17	35064526	35065526	+	983.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_001462, exon 1 of 1)	non-coding (NR_001462, exon 1 of 1)	589.0	NR_001462	114763.0	Mm.491064	NR_001462		G6bos	G6b|NG31	G6b opposite strand	ncRNA	5.0	0.0	7.5	3.0	0.0	0.5
Merged-chr2-129175809-4	chr2	129175328	129176328	+	983.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4845.0	NR_045264	100048701.0	Mm.428544	NR_045264	ENSMUSG00000084826	AI847159	-	expressed sequence AI847159	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-51030364-4	chr9	51029872	51030872	+	983.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-21299.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98833199-4	chr12	98832728	98833728	+	983.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081191, intron 21 of 43)	intron (NM_001081191, intron 21 of 43)	62206.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102898862-4	chr2	102898389	102899389	+	983.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	2776.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	62.0	98.0	71.5	64.5	104.5	92.0
Merged-chr6-108528184-4	chr6	108527684	108528684	+	983.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 60 of 61)	intron (NM_010585, intron 60 of 61)	38441.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.0	0.0	0.0	1.0	6.0	2.5
Merged-chr4-115825450-4	chr4	115824942	115825942	+	983.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	-2650.0	NM_175308	100465.0	Mm.35571	NM_175308	ENSMUSG00000028709	Mob3c	AW822253|D130076I06Rik|Mobkl2c	MOB kinase activator 3C	protein-coding	15.0	17.5	13.5	4.5	18.5	7.5
Merged-chr9-123840492-4	chr9	123839988	123840988	+	983.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110253, intron 3 of 17)	intron (NM_001110253, intron 3 of 17)	11173.0	NM_148925	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-14109858-4	chr16	14109362	14110362	+	983.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081154, exon 27 of 27)	3' UTR (NM_001081154, exon 27 of 27)	49412.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27702404-4	chr15	27701895	27702895	+	983.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20853.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-56885405-4	chr14	56884894	56885894	+	983.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1209.0	NM_177627	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-57029821-3	chr18	57029335	57030335	+	983.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54456.0	NM_029909	77422.0	Mm.256874	NM_029909	ENSMUSG00000024592	C330018D20Rik	AU018666	RIKEN cDNA C330018D20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-54019699-4	chr5	54019185	54020185	+	983.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	21162.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27237415-4	chr3	27236892	27237892	+	983.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 3 of 4)	intron (NM_178772, intron 3 of 4)	54388.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10486943-4	chr16	10486437	10487437	+	983.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243760, intron 1 of 18)	intron (NM_001243760, intron 1 of 18)	-1241.0	NM_007575	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135240503-4	chr4	135239996	135240996	+	983.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	32264.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135267145-4	chr4	135266643	135267643	+	983.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	5617.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-117360360-3	chr3	117359927	117360927	+	983.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177664, exon 1 of 7)	5' UTR (NM_177664, exon 1 of 7)	449.0	NM_177664	229791.0	Mm.140138	NM_177664	ENSMUSG00000044667	Plppr4	A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455	phospholipid phosphatase related 4	protein-coding	11.5	0.0	1.5	10.0	0.0	0.0
Merged-chr4-63391459-4	chr4	63390954	63391954	+	983.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 4 of 21)	intron (NM_001045514, intron 4 of 21)	6786.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-72366176-4	chr2	72365682	72366682	+	983.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 4 of 19)	intron (NM_023057, intron 4 of 19)	80481.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117238317-2	chr11	117237817	117238817	+	983.0833130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 2 of 11)	intron (NM_001113486, intron 2 of 11)	-27929.0	NM_001113487	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-63497385-4	chr15	63496876	63497876	+	983.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17768.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	15.5	8.0	7.5	5.5	3.0	10.5
Merged-chr2-52967122-4	chr2	52966621	52967621	+	983.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	109253.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3151209-3	chr11	3150659	3151659	+	983.055542	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 14 of 32)	intron (NM_030207, intron 14 of 32)	27138.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70563880-3	chr11	70563368	70564368	+	983.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 1 of 30)	intron (NM_016713, intron 1 of 30)	987.0	NM_016713	50932.0	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	1.5	0.0	0.0	0.0	6.0	0.0
Merged-chr3-7366485-3	chr3	7365986	7366986	+	983.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008862)	promoter-TSS (NM_008862)	-118.0	NM_008862	18767.0	Mm.3193	NM_008862	ENSMUSG00000027499	Pkia	AI415001|PKIalpha	protein kinase inhibitor, alpha	protein-coding	5.5	0.0	1.5	13.5	5.5	8.5
Merged-chr5-64289425-4	chr5	64288914	64289914	+	983.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 11 of 18)	intron (NM_001289514, intron 11 of 18)	59057.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	3.0	0.0	6.0	2.0	1.0	2.0
Merged-chr8-14643246-4	chr8	14642733	14643733	+	983.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 4 of 15)	MTE2a|LTR|ERVL-MaLR	-245303.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	3.5	13.0	2.0	3.5	13.0	2.0
Merged-chr10-62530394-4	chr10	62529911	62530911	+	983.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2966.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95944056-3	chr13	95943548	95944548	+	983.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52126.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	3.0	13.5	5.0	1.0	6.5	0.0
Merged-chr6-54048982-4	chr6	54048485	54049485	+	983.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	9053.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	24.5	20.0	9.5	4.5	19.0	11.0
Merged-chr2-117019729-1	chr2	117019229	117020229	+	983.0	f1_c57bl6.idr	Intergenic	Intergenic	-101342.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	4.0	17.5	6.0	0.0	6.0	1.5
Merged-chr8-108900776-2	chr8	108900276	108901276	+	983.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 4 of 9)	intron (NM_007496, intron 4 of 9)	-36084.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	11.5	10.0	7.0	10.5	4.0	29.0
Merged-chr5-96163008-3	chr5	96162514	96163514	+	983.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1024.0	NM_144910	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	7.0	12.0	9.0	4.0	13.5	12.0
Merged-chr16-45375987-3	chr16	45375475	45376475	+	983.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33078.0	NM_001358443	17470.0	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	4.5	4.5	5.5	12.0	5.0	20.5
Merged-chr11-3175756-4	chr11	3175193	3176193	+	983.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 6 of 32)	B2_Mm1t|SINE|B2	17770.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	2.0	0.0	0.0	2.0	1.5	0.5
Merged-chr19-29365520-2	chr19	29365020	29366020	+	983.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1918.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-17813831-2	chr14	17813331	17814331	+	983.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 1 of 9)	intron (NM_001113417, intron 1 of 9)	152871.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37047707-2	chr9	37047207	37048207	+	983.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 2 of 12)	intron (NM_001029838, intron 2 of 12)	99615.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73421512-4	chr15	73421023	73422023	+	983.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358046, intron 1 of 34)	intron (NM_001358046, intron 1 of 34)	1668.0	NM_007982	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-9871096-2	chr2	9870596	9871596	+	983.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355111, intron 3 of 5)	intron (NM_001355111, intron 3 of 5)	7504.0	NM_001355110	14462.0	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46935624-2	chr8	46935124	46936124	+	983.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51263.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59544449-1	chr9	59543949	59544949	+	983.0	f0_balb.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	4909.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27184566-2	chr14	27184066	27185066	+	983.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	intron (NM_001289686, intron 2 of 12)	40573.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29400297-2	chr17	29399796	29400796	+	983.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	39382.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	1.0	1.0	1.0	0.0	1.5	5.5
Merged-chr2-72285865-5	chr2	72285447	72286447	+	983.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 1 of 19)	CpG	246.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95955673-4	chr13	95955174	95956174	+	983.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER63B|DNA|hAT-Blackjack	-63752.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	4.0	18.0	21.5	8.5	27.0	10.5
Merged-chr11-85324102-3	chr11	85323587	85324587	+	983.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016910, intron 1 of 5)	intron (NM_016910, intron 1 of 5)	12833.0	NM_016910	53892.0	Mm.45609	NM_016910	ENSMUSG00000020525	Ppm1d	AV338790|Wip1	protein phosphatase 1D magnesium-dependent, delta isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-106683855-3	chr12	106683361	106684361	+	983.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32463.0	NR_015512	71033.0	Mm.159404	NR_015512	ENSMUSG00000085820	4933406K04Rik	4930426M03Rik|4930485I22Rik|4933427G14Rik	RIKEN cDNA 4933406K04 gene	ncRNA	0.0	0.0	0.0	4.0	0.0	0.0
Merged-chr4-3689837-2	chr4	3689337	3690337	+	983.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	MTD|LTR|ERVL-MaLR	11716.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80684500-2	chr18	80683999	80684999	+	983.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 2 of 9)	intron (NM_198429, intron 2 of 9)	23674.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	15.5	8.5	15.5	16.0	10.5	8.5
Merged-chr7-108954433-2	chr7	108953933	108954933	+	983.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	20018.0	NM_025344	66085.0	Mm.182962	NM_025344	ENSMUSG00000031029	Eif3f	0610037M02Rik|AA409853|Eif3s5	eukaryotic translation initiation factor 3, subunit F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79634705-3	chr2	79634191	79635191	+	983.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080558)	promoter-TSS (NM_080558)	-734.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	18.5	70.0	27.5	58.0	95.5	50.5
Merged-chr11-43375167-4	chr11	43374671	43375671	+	983.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029558)	promoter-TSS (NR_029558)	-710.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91052154-3	chr2	91051657	91052657	+	983.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	-1859.0	NM_008948	19182.0	Mm.289832	NM_008948	ENSMUSG00000002102	Psmc3	TBP-1	proteasome (prosome, macropain) 26S subunit, ATPase 3	protein-coding	4.0	5.0	12.5	3.0	15.0	10.0
Merged-chr10-44553833-4	chr10	44553330	44554330	+	983.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-95082.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96411024-4	chr11	96410514	96411514	+	983.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45256.0	NM_008266	15407.0	Mm.890	NM_008266	ENSMUSG00000018973	Hoxb1	Hox-2.9	homeobox B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75153834-1	chr11	75153334	75154334	+	983.0	f1_c57bl6.idr	intron (NM_001002764, intron 15 of 18)	intron (NM_001002764, intron 15 of 18)	14318.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	26.0	21.5	21.0	26.0	24.0	32.0
Merged-chr12-112952665-2	chr12	112952165	112953165	+	983.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10523.0	NM_001316724	66174.0	Mm.7070	NM_025399	ENSMUSG00000002804	Nudt14	1110030M18Rik|UGPPase	nudix (nucleoside diphosphate linked moiety X)-type motif 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12501045-3	chr19	12500532	12501532	+	983.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172442, exon 1 of 9)	exon (NM_172442, exon 1 of 9)	964.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63860874-2	chr14	63860374	63861374	+	983.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028228, intron 1 of 6)	intron (NM_028228, intron 1 of 6)	562.0	NM_028228	72400.0	Mm.379214	NM_028228	ENSMUSG00000021958	Pinx1	2210403I16Rik|2610028A01Rik|67-11-3|AU024023|LPTS|LPTS1	PIN2/TERF1 interacting, telomerase inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136621413-1	chr4	136620913	136621913	+	983.0	f1_c57bl6.idr	Intergenic	Intergenic	-1208.0	NM_001243262	242707.0	Mm.448979	NM_001243262	ENSMUSG00000070683	Lactbl1	-	lactamase, beta-like 1	protein-coding	0.0	2.5	1.0	0.0	0.0	1.0
Merged-chr10-37136556-2	chr10	37136056	37137056	+	983.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008538, exon 2 of 2)	exon (NM_008538, exon 2 of 2)	2370.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34248693-2	chr10	34248193	34249193	+	983.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33497.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135907096-4	chr5	135906606	135907606	+	983.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	19187.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45308150-4	chr19	45307628	45308628	+	982.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55606.0	NM_001360122	12234.0	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	2.0	3.0	2.5	2.0	0.0	2.5
Merged-chr11-77802767-4	chr11	77802268	77803268	+	982.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291214, intron 1 of 38)	intron (NM_001291214, intron 1 of 38)	1470.0	NM_001291215	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166900982-4	chr2	166900486	166901486	+	982.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5110.0	NM_023565	110750.0	Mm.22417	NM_023565	ENSMUSG00000002718	Cse1l	2610100P18Rik|AA407533|Capts|Cas|Xpo2	chromosome segregation 1-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-76675550-4	chr5	76675053	76676053	+	982.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83839.0	NM_199032	381644.0	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-116726229-4	chr10	116725727	116726727	+	982.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045345, intron 1 of 2)	intron (NR_045345, intron 1 of 2)	2950.0	NR_045345	72286.0	Mm.396207	NR_045345	ENSMUSG00000100198	1700030O20Rik	-	RIKEN cDNA 1700030O20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88282856-4	chr8	88282360	88283360	+	982.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001109756)	promoter-TSS (NM_001109756)	-132.0	NM_001109756	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	6.5	17.5	12.0	10.5	11.0	7.0
Merged-chr10-127177937-4	chr10	127177461	127178461	+	982.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177615, exon 5 of 17)	exon (NM_177615, exon 5 of 17)	2684.0	NM_177615	216441.0	Mm.248373	NM_177615	ENSMUSG00000040441	Slc26a10	C78409|D630010I07	solute carrier family 26, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146781362-4	chr3	146780862	146781862	+	982.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164200)	promoter-TSS (NM_001164200)	54.0	NM_001164200	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111923682-4	chr8	111923199	111924199	+	982.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033321, intron 2 of 6)	ORR1E|LTR|ERVL-MaLR	10114.0	NM_001357348	234740.0	Mm.87513	NM_001033321	ENSMUSG00000031951	Tmem231	4932417I16Rik|Gm178	transmembrane protein 231	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-80272094-4	chr8	80271581	80272581	+	982.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-214073.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99107029-4	chr7	99106511	99107511	+	982.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 3 of 14)	intron (NM_178635, intron 3 of 14)	34133.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	3.5	27.5	26.5	5.5	21.0	9.5
Merged-chr3-88023033-4	chr3	88022556	88023556	+	982.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022031, intron 6 of 6)	CpG	4455.0	NM_022031	73940.0	Mm.294467	NM_022031	ENSMUSG00000004894	Hapln2	4930401E20Rik|Bral1	hyaluronan and proteoglycan link protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75429200-4	chr11	75428701	75429701	+	982.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6578.0	NM_011340	20317.0	Mm.2044	NM_011340	ENSMUSG00000000753	Serpinf1	AI195227|EPC-1|Pedf|Pedfl|Sdf3	serine (or cysteine) peptidase inhibitor, clade F, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110385476-4	chr5	110384977	110385977	+	982.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142642, intron 5 of 18)	intron (NM_001142642, intron 5 of 18)	1650.0	NM_028596	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	0.5	13.5	12.0	0.0	7.0	6.5
Merged-chr7-120677506-4	chr7	120676982	120677982	+	982.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164580)	promoter-TSS (NM_001164580)	-138.0	NM_001164580	233812.0	Mm.276479	NM_001164580	ENSMUSG00000046096	Mosmo	Atthog	modulator of smoothened	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97452405-4	chr6	97451886	97452886	+	982.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	6900.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	54.0	93.0	41.0	42.0	80.5	34.5
Merged-chr6-28880978-5	chr6	28880428	28881428	+	982.8666380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 18 of 23)	intron (NM_019776, intron 18 of 23)	-49181.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-48840489-4	chr6	48839972	48840972	+	982.857178	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_023056, exon 1 of 7)	5' UTR (NM_023056, exon 1 of 7)	516.0	NM_023056	65963.0	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-42301416-4	chr13	42300902	42301902	+	982.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010104)	promoter-TSS (NM_010104)	-74.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85990337-2	chr12	85989837	85990837	+	982.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	88704.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28769253-2	chr7	28768753	28769753	+	982.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_022432, intron 2 of 15)	L1ME3G|LINE|L1	2501.0	NM_001122766	64383.0	Mm.272443	NM_022432	ENSMUSG00000015149	Sirt2	5730427M03Rik|SIR2L2|Sir2l	sirtuin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-117470302-2	chr7	117469799	117470799	+	982.833374	f0_balb.idr|f0_c57.idr	intron (NM_175645, intron 1 of 11)	intron (NM_175645, intron 1 of 11)	89320.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73444888-2	chr14	73444388	73445388	+	982.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-59599.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114931264-4	chr11	114930772	114931772	+	982.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199221, intron 1 of 3)	intron (NM_199221, intron 1 of 3)	3114.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-97607332-4	chr13	97606834	97607834	+	982.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47334.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69159722-4	chr12	69159234	69160234	+	982.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009093)	promoter-TSS (NM_009093)	-548.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	119.5	268.0	175.0	92.0	214.5	116.0
Merged-chr11-83020116-2	chr11	83019616	83020616	+	982.8000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_181545, intron 1 of 5)	intron (NM_181545, intron 1 of 5)	606.0	NM_001167743	276950.0	Mm.491599	NM_181545	ENSMUSG00000035208	Slfn8	-	schlafen 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11540352-4	chr19	11539856	11540856	+	982.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025658, intron 1 of 6)	intron (NM_025658, intron 1 of 6)	3507.0	NM_025658	66607.0	Mm.441056	NM_025658	ENSMUSG00000024678	Ms4a4d	2210417J23Rik	membrane-spanning 4-domains, subfamily A, member 4D	protein-coding	19.5	47.0	11.5	8.0	44.5	18.5
Merged-chr17-84361154-4	chr17	84360654	84361654	+	982.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 26 of 37)	intron (NM_183021, intron 26 of 37)	105054.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131981795-4	chr1	131981263	131982263	+	982.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145977, exon 5 of 5)	3' UTR (NM_145977, exon 5 of 5)	11154.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28951882-4	chr17	28951377	28952377	+	982.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356299)	promoter-TSS (NM_001356299)	-559.0	NM_001356300	66989.0	Mm.435	NM_025888	ENSMUSG00000005936	Kctd20	2410004N11Rik|AI451943|AW541186|D17Ertd562e	potassium channel tetramerisation domain containing 20	protein-coding	28.0	66.0	78.5	38.0	67.5	56.5
Merged-chr18-17726533-4	chr18	17726052	17727052	+	982.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-145562.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28432232-4	chr17	28431745	28432745	+	982.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 3 of 10)	MER90a|LTR|ERV1	53904.0	NM_010220	14229.0	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124202352-4	chr6	124201867	124202867	+	982.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001104642, intron 3 of 5)	intron (NM_001104642, intron 3 of 5)	29417.0	NM_001104642	232367.0	Mm.469872	NM_001104642	ENSMUSG00000072778	Vmn2r27	EG232367	vomeronasal 2, receptor27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46869683-4	chr19	46869188	46870188	+	982.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102471, intron 5 of 6)	intron (NM_001102471, intron 5 of 6)	92663.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110731979-3	chr11	110731361	110732361	+	982.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-236172.0	NM_010604	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-135947595-3	chr6	135947082	135948082	+	982.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008171, intron 4 of 14)	intron (NM_008171, intron 4 of 14)	225929.0	NM_008171	14812.0	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	0.5	1.0	11.0	1.0	11.0	2.0
Merged-chr4-9643168-3	chr4	9642675	9643675	+	982.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	542.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	56.5	81.5	57.5	33.0	47.5	41.0
Merged-chr5-99215435-4	chr5	99214907	99215907	+	982.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37520.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5520153-4	chr17	5519658	5520658	+	982.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	27558.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-100742230-4	chr10	100741721	100742721	+	982.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152765)	promoter-TSS (NR_152765)	-586.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70426721-4	chr8	70426233	70427233	+	982.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004062, intron 1 of 13)	intron (NM_001004062, intron 1 of 13)	12840.0	NM_001004062	382056.0	Mm.227767	NM_001004062	ENSMUSG00000003575	Crtc1	AI413414|Mect1|R74955|TORC1|mKIAA0616	CREB regulated transcription coactivator 1	protein-coding	14.0	4.5	4.0	14.0	6.5	2.5
Merged-chr17-7925413-4	chr17	7924898	7925898	+	982.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145968)	promoter-TSS (NM_145968)	-602.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0.5	4.0	0.0	1.0	2.5	1.0
Merged-chr16-65631557-2	chr16	65631057	65632057	+	982.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-68860.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165680556-4	chr1	165680036	165681036	+	982.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	27558.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59236127-4	chr10	59235623	59236623	+	982.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14201.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150673046-3	chr4	150672529	150673529	+	982.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20855.0	NM_173774	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122305625-4	chr7	122305112	122306112	+	982.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	16487.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66272509-3	chr15	66272012	66273012	+	982.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152923, intron 1 of 14)	intron (NM_152923, intron 1 of 14)	13712.0	NM_152923	110862.0	Mm.255585	NM_152923	ENSMUSG00000056258	Kcnq3	-	potassium voltage-gated channel, subfamily Q, member 3	protein-coding	0.0	3.5	10.5	6.0	5.5	14.5
Merged-chr2-130907003-2	chr2	130906501	130907501	+	982.6666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015523)	promoter-TSS (NR_015523)	506.0	NM_009730	11990.0	Mm.119936	NM_009730	ENSMUSG00000027312	Atrn	AW558010|Mgca|mg	attractin	protein-coding	0.5	6.5	0.0	10.0	10.5	3.5
Merged-chr1-194962394-4	chr1	194961902	194962902	+	982.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033564, intron 2 of 4)	intron (NR_033564, intron 2 of 4)	14557.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101397367-2	chr7	101396867	101397867	+	982.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 16 of 33)	intron (NM_001040111, intron 16 of 33)	2979.0	NM_198096	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60732541-3	chr18	60732086	60733086	+	982.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	555.0	NM_001348102	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	12.5	37.5	22.5	18.0	49.0	26.5
Merged-chr16-24137487-4	chr16	24136993	24137993	+	982.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54803.0	NR_155457	108168278.0	Mm.417246	NR_155457		Gm46545	-	predicted gene, 46545	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61571015-6	chr18	61570530	61571530	+	982.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357500, intron 4 of 9)	intron (NM_001357500, intron 4 of 9)	15757.0	NM_146087	93687.0	Mm.26908	NM_146087	ENSMUSG00000024576	Csnk1a1	2610208K14Rik|4632404G05Rik|5430427P18Rik|CK1a|Csnk1a	casein kinase 1, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-59179259-4	chr17	59178764	59179764	+	982.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEi|LINE|L1	-165942.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66360455-4	chr9	66359960	66360960	+	982.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145617, intron 1 of 77)	intron (NM_145617, intron 1 of 77)	10010.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-7897949-4	chr17	7897456	7898456	+	982.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28044.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118247560-6	chr11	118247102	118248102	+	982.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	990.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87750455-4	chr6	87750010	87751010	+	982.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159697, intron 3 of 7)	intron (NM_001159697, intron 3 of 7)	19641.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	4.0	2.0	6.0	6.5	20.5	15.0
Merged-chr10-80098783-4	chr10	80098269	80099269	+	982.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359637, intron 1 of 3)	intron (NM_001359637, intron 1 of 3)	2418.0	NM_001359635	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32540891-4	chr9	32540381	32541381	+	982.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	CpG	571.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20056493-4	chr10	20056004	20057004	+	982.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008580, exon 9 of 30)	exon (NM_008580, exon 9 of 30)	-92416.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122642302-4	chr10	122641800	122642800	+	982.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6039.0	NR_105839	102465223.0		NR_105839	ENSMUSG00000098522	Mir6412	Gm27364|mmu-mir-6412	microRNA 6412	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8980971-4	chr19	8980475	8981475	+	982.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8309.0	NR_104460	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	6.5	4.5	0.0	0.0	12.5	5.0
Merged-chr9-22054932-4	chr9	22054451	22055451	+	982.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310759)	TTS (NM_001310759)	-2928.0	NM_010487	15571.0	Mm.390167	NM_010487	ENSMUSG00000003410	Elavl3	2600009P04Rik|Huc|PLE21|mHuC	ELAV like RNA binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76943202-4	chr12	76942689	76943689	+	982.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361663, intron 3 of 4)	intron (NM_001361663, intron 3 of 4)	19059.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-91112311-3	chr8	91111803	91112803	+	982.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001302337, exon 10 of 10)	3' UTR (NM_001302337, exon 10 of 10)	21436.0	NM_001358938	14339.0	Mm.324588	NM_010241	ENSMUSG00000031667	Aktip	AL023020|Fif|Ft|Ft1|Fts	thymoma viral proto-oncogene 1 interacting protein	protein-coding	14.0	35.0	14.0	21.5	39.5	24.0
Merged-chr7-28528053-5	chr7	28527463	28528463	+	982.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5127.0	NM_177396	338374.0	Mm.246799	NM_177396	ENSMUSG00000060747	Ifnl3	IFL-1|IL-28B|INF-alpha|INF-lambda|Il28|Il28b	interferon lambda 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35380130-4	chr8	35379626	35380626	+	982.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177741, intron 1 of 1)	intron (NM_177741, intron 1 of 1)	4385.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	17.5	20.0	28.5	21.5	40.5	37.0
Merged-chr8-116975940-4	chr8	116975435	116976435	+	982.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027103, intron 1 of 2)	intron (NM_027103, intron 1 of 2)	2718.0	NM_001357254	69528.0	Mm.272846	NM_027103	ENSMUSG00000031847	1700030J22Rik	-	RIKEN cDNA 1700030J22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25593662-4	chr8	25593166	25594166	+	982.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173012, intron 3 of 10)	intron (NM_173012, intron 3 of 10)	3821.0	NM_173012	270035.0	Mm.268349	NM_173012	ENSMUSG00000037363	Letm2	6030453H13|D030041N04Rik	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40564437-4	chr12	40563923	40564923	+	982.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	118370.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98711717-4	chr7	98711231	98712231	+	982.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355114, intron 4 of 5)	intron (NM_001355114, intron 4 of 5)	8484.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64290100-4	chr5	64289574	64290574	+	982.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 11 of 18)	intron (NM_001289514, intron 11 of 18)	59717.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	12.5	16.5	8.0	0.0	10.5	6.0
Merged-chr10-93594143-4	chr10	93593637	93594637	+	982.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045810, intron 1 of 3)	intron (NR_045810, intron 1 of 3)	-4479.0	NM_027246	69878.0	Mm.259642	NM_027246	ENSMUSG00000020018	Snrpf	2010013O18Rik|SMF|sm-F|snRNP-F	small nuclear ribonucleoprotein polypeptide F	protein-coding	1.5	6.0	5.5	4.0	2.0	4.5
Merged-chr19-5512380-4	chr19	5511865	5512865	+	982.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1848.0	NM_001024560	225861.0	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46899505-3	chr19	46899003	46900003	+	982.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029810, intron 5 of 17)	intron (NM_029810, intron 5 of 17)	62848.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	21.0	2.0	14.0	21.0	1.5	10.5
Merged-chr6-50375839-4	chr6	50375345	50376345	+	982.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163645, intron 2 of 21)	intron (NM_001163645, intron 2 of 21)	6992.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	42.5	55.0	22.5	23.0	23.0	8.5
Merged-chr3-133542242-4	chr3	133541734	133542734	+	982.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040400, intron 1 of 10)	intron (NM_001040400, intron 1 of 10)	2156.0	NM_001040400	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110772724-4	chr7	110772234	110773234	+	982.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009667, exon 1 of 15)	5' UTR (NM_009667, exon 1 of 15)	130.0	NM_009667	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.5	0.0	0.0	0.0	0.0	0.5
Merged-chr5-127621326-4	chr5	127620824	127621824	+	982.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3932.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35123466-4	chr8	35122955	35123955	+	982.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157765.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	13.0	55.0	63.0	25.5	13.5	7.5
Merged-chr10-43504525-4	chr10	43504028	43505028	+	982.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359600, intron 3 of 3)	intron (NM_001359600, intron 3 of 3)	11363.0	NM_001359600	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95793966-4	chr15	95793463	95794463	+	982.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	3120.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8358395-4	chr10	8357888	8358888	+	982.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 2 of 7)	intron (NM_177387, intron 2 of 7)	160437.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0.0	1.0	0.0	2.5	0.0	0.0
Merged-chr15-73023077-4	chr15	73022603	73023603	+	982.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029640, intron 6 of 21)	intron (NM_029640, intron 6 of 21)	32709.0	NM_029640	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50430424-8	chr16	50429806	50430806	+	982.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 1 of 16)	CpG	2083.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46042447-2	chr19	46041947	46042947	+	982.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113408, intron 1 of 10)	intron (NM_001113408, intron 1 of 10)	-2826.0	NM_010697	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127936447-2	chr7	127935947	127936947	+	982.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001319147, exon 8 of 15)	exon (NM_001319147, exon 8 of 15)	-6334.0	NM_133351	76560.0	Mm.5875	NM_133351	ENSMUSG00000030800	Prss8	2410039E18Rik|AI313909|C79772|CAP1|fr|mCAP1	protease, serine 8 (prostasin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-93956379-2	chr11	93955879	93956879	+	982.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008705)	promoter-TSS (NM_008705)	-123.0	NM_008705	18103.0	Mm.1260	NM_008705	ENSMUSG00000020857	Nme2	NM23-H2|NM23B|nm23-M2	NME/NM23 nucleoside diphosphate kinase 2	protein-coding	47.0	58.5	38.0	17.5	45.0	38.0
Merged-chr11-54304075-2	chr11	54303575	54304575	+	982.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144823)	promoter-TSS (NM_144823)	-129.0	NM_144823	216739.0	Mm.267478	NM_144823	ENSMUSG00000020333	Acsl6	A330035H04Rik|AW050338|Facl6|LACS|Lacsl|mKIAA0837	acyl-CoA synthetase long-chain family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69124737-2	chr8	69124237	69125237	+	982.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	16216.0	NM_199364	211134.0	Mm.409446	NM_199364	ENSMUSG00000036306	Lzts1	F37|FEZ1|PSD-Zip70	leucine zipper, putative tumor suppressor 1	protein-coding	5.0	5.5	4.0	1.5	5.5	5.0
Merged-chr5-100587818-4	chr5	100587306	100588306	+	982.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15601.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22658714-4	chr8	22658212	22659212	+	982.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010546)	TTS (NM_010546)	-5275.0	NM_011130	18970.0	Mm.123211	NM_011130	ENSMUSG00000031536	Polb	A430088C08Rik	polymerase (DNA directed), beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105715748-2	chr8	105715248	105716248	+	982.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027469)	TTS (NM_027469)	7459.0	NM_027655	71046.0	Mm.280888	NM_027655	ENSMUSG00000013158	4933405L10Rik	-	RIKEN cDNA 4933405L10 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20370646-2	chr16	20370146	20371146	+	982.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013790, intron 17 of 29)	B2_Mm2|SINE|B2	-45242.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75368090-2	chr18	75367590	75368590	+	982.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001042660, exon 1 of 4)	5' UTR (NM_001042660, exon 1 of 4)	725.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38286057-2	chr18	38285557	38286557	+	982.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1656.0	NM_017378	53601.0	Mm.12862	NM_017378	ENSMUSG00000024440	Pcdh12	Pcdh14|VE-cad-2	protocadherin 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64392669-4	chr5	64392190	64393190	+	982.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75252.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	46.0	55.0	57.5	50.0	63.5	41.5
Merged-chr16-17199827-2	chr16	17199327	17200327	+	982.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009456, intron 1 of 3)	intron (NM_009456, intron 1 of 3)	1665.0	NM_009456	22195.0	Mm.3074	NM_009456	ENSMUSG00000038965	Ube2l3	C79827|UbcM4|Ubce7	ubiquitin-conjugating enzyme E2L 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36334568-3	chr15	36334056	36335056	+	982.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51409.0	NM_001357631	30945.0	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25787771-2	chr7	25787271	25788271	+	982.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 1 of 19)	intron (NM_009465, intron 1 of 19)	962.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90446600-4	chr3	90446127	90447127	+	982.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12991.0	NM_178876	229543.0	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	9.5	21.5	8.5	16.0	27.0	8.5
Merged-chr16-36817512-4	chr16	36817010	36818010	+	982.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134111, intron 2 of 5)	intron (NM_134111, intron 2 of 5)	-8805.0	NM_001113405	106389.0	Mm.432078	NM_134111	ENSMUSG00000022838	Eaf2	AW048865|FESTA-L|FESTA-S|Festa|Traits|U19	ELL associated factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91972909-2	chr2	91972409	91973409	+	982.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-9346.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	59.5	63.0	41.5	34.0	97.5	79.5
Merged-chr10-20594632-2	chr10	20594132	20595132	+	982.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 2 of 12)	intron (NM_013875, intron 2 of 12)	-46304.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-34259581-2	chr4	34259081	34260081	+	982.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-209514.0	NM_026293	67652.0	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107015235-2	chr11	107014735	107015735	+	982.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12988.0	NM_001163473	69066.0	Mm.40679	NM_001163473	ENSMUSG00000078607	1810010H24Rik	-	RIKEN cDNA 1810010H24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-48788832-4	chr11	48788334	48789334	+	982.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11526.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130284037-4	chr4	130283542	130284542	+	982.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-8456.0	NM_172702	230779.0	Mm.45132	NM_172702	ENSMUSG00000023232	Serinc2	2310004K20Rik|AW121759|FKSG84|TDE2|Tde2l	serine incorporator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-92964362-4	chr13	92963854	92964854	+	982.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	X7B_LINE|LINE|CR1	-108950.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122662712-4	chr5	122662203	122663203	+	982.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038845, intron 5 of 12)	Lx8|LINE|L1	12279.0	NM_001284402	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73037885-4	chr2	73037382	73038382	+	982.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57436.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102156346-4	chr11	102155835	102156835	+	982.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029649)	promoter-TSS (NM_029649)	72.0	NM_029649	76547.0	Mm.46529	NM_029649	ENSMUSG00000020921	Tmem101	2610511E22Rik	transmembrane protein 101	protein-coding	3.5	6.5	5.5	6.5	15.5	9.0
Merged-chr3-109062610-4	chr3	109062107	109063107	+	982.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17892.0	NM_029054	74686.0	Mm.307948	NM_029054	ENSMUSG00000027880	Slc25a54	4930443G12Rik|SCaMC-1like	solute carrier family 25, member 54	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45358403-3	chr13	45357898	45358898	+	982.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31344.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	4.5	2.0	4.0	6.5	5.5	3.0
Merged-chr10-43424684-3	chr10	43424187	43425187	+	982.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168289, intron 7 of 7)	intron (NM_001168289, intron 7 of 7)	-54453.0	NM_199028	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136569736-4	chr1	136569250	136570250	+	982.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55151.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98818745-4	chr7	98818241	98819241	+	982.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16371.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-100138710-4	chr10	100138149	100139149	+	982.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122828.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63368916-4	chr4	63368539	63369539	+	982.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 21 of 21)	intron (NM_001045514, intron 21 of 21)	6590.0	NM_011016	18406.0	Mm.14173	NM_011016	ENSMUSG00000061540	Orm2	Agp1|Orm-2	orosomucoid 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27026976-4	chr2	27026470	27027470	+	982.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177627, intron 2 of 8)	intron (NM_001177627, intron 2 of 8)	1028.0	NM_172659	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30783532-4	chr2	30783027	30784027	+	982.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	18210.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34607978-4	chr6	34607477	34608477	+	982.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 1 of 13)	intron (NM_001347100, intron 1 of 13)	9473.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	15.5	24.5	19.5	14.5	10.0	23.5
Merged-chr17-86973067-6	chr17	86972608	86973608	+	982.4074099999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	9997.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	23.0	32.0	16.0	14.0	15.0	11.5
Merged-chr6-145792618-3	chr6	145792121	145793121	+	982.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15762.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-126690809-4	chr3	126690246	126691246	+	982.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 3 of 18)	intron (NM_001025438, intron 3 of 18)	93795.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	26.0	44.5	13.5	2.5	18.5	9.0
Merged-chr17-10372434-6	chr17	10371924	10372924	+	982.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	47822.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42275461-6	chr10	42274912	42275912	+	982.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019740, exon 2 of 4)	exon (NM_019740, exon 2 of 4)	1330.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-14990258-3	chr17	14989758	14990758	+	982.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001123370, intron 11 of 11)	intron (NM_001123370, intron 11 of 11)	11394.0	NM_001123370	100041574.0	Mm.393767	NM_001123370	ENSMUSG00000036552	9030025P20Rik	D17Zt9e	RIKEN cDNA 9030025P20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119395106-3	chr9	119394606	119395606	+	982.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7072.0	NM_007397	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	13.5	26.5	16.0	0.0	3.5	11.5
Merged-chr5-66140172-4	chr5	66139697	66140697	+	982.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	10781.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	16.0	51.0	38.0	50.0	57.0	28.0
Merged-chr14-55728470-4	chr14	55727981	55728981	+	982.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6218.0	NM_001360387	56187.0	Mm.87216	NM_019519	ENSMUSG00000040472	Rabggta	gm	Rab geranylgeranyl transferase, a subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-57399039-4	chr14	57398552	57399552	+	982.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030004)	promoter-TSS (NM_030004)	-569.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45038200-4	chr14	45037679	45038679	+	982.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	50068.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-46963447-4	chr7	46962947	46963947	+	982.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4929.0	NM_001040695	54122.0	Mm.1999	NM_016855	ENSMUSG00000043262	Uevld	8430408E05Rik|Attp	UEV and lactate/malate dehyrogenase domains	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152746675-2	chr1	152746175	152747175	+	982.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	-3876.0	NM_001081197	71281.0	Mm.158650	NM_001081197	ENSMUSG00000055547	Apobec4	4933431M11Rik	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113597755-2	chr13	113597255	113598255	+	982.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	20809.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97164454-4	chr7	97163959	97164959	+	982.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	82708.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-51556776-4	chr6	51556267	51557267	+	982.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361577, intron 1 of 6)	L1MB2|LINE|L1	11474.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74506691-3	chr1	74506171	74507171	+	982.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310662)	promoter-TSS (NM_001310662)	611.0	NM_021383	58184.0	Mm.291708	NM_021383	ENSMUSG00000026174	Cnot9	2610007F23Rik|AI593551|Fl10|Rqcd1	CCR4-NOT transcription complex, subunit 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25592013-4	chr2	25591523	25592523	+	982.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024616, intron 7 of 14)	intron (NM_001024616, intron 7 of 14)	-11924.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120565556-4	chr2	120565036	120566036	+	982.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1677.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	22.0	46.5	25.0	23.0	46.5	25.5
Merged-chr11-75171737-4	chr11	75171228	75172228	+	982.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1473.0	NM_010430	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75130429-4	chr14	75129997	75130997	+	982.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001247984)	promoter-TSS (NM_001247984)	386.0	NM_027581	70859.0	Mm.320289	NM_027581	ENSMUSG00000021997	Lrrc63	4921509B22Rik	leucine rich repeat containing 63	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59435873-4	chr15	59435386	59436386	+	982.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 3 of 4)	intron (NM_001164604, intron 3 of 4)	61688.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	22.5	56.5	44.0	24.0	65.5	55.5
Merged-chr18-5821563-4	chr18	5821075	5822075	+	982.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	228928.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27600870-4	chr3	27600354	27601354	+	982.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 4 of 26)	intron (NM_001356953, intron 4 of 26)	-15859.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73693565-4	chr12	73693072	73694072	+	982.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 4 of 13)	B3|SINE|B2	108776.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-60954801-4	chr8	60954311	60955311	+	982.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173876)	promoter-TSS (NM_173876)	-12.0	NM_173876	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9486131-4	chr18	9485661	9486661	+	982.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36007.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	17.0	6.0	7.5	9.0	9.0	9.5
Merged-chr1-36927790-4	chr1	36927290	36928290	+	982.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 1 of 40)	intron (NM_018872, intron 1 of 40)	11737.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-79290799-4	chr14	79290315	79291315	+	982.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025427, intron 3 of 4)	intron (NM_025427, intron 3 of 4)	10820.0	NM_025427	66214.0	Mm.29811	NM_025427	ENSMUSG00000022018	Rgcc	1190002H23Rik|Rgc-32|Rgc32	regulator of cell cycle	protein-coding	9.0	1.0	13.0	0.0	24.0	8.0
Merged-chr15-100683174-4	chr15	100682587	100683587	+	982.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033612, intron 4 of 7)	B3A|SINE|B2	4833.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	1.5	2.0	6.0	0.0	9.0	4.5
Merged-chr16-20325517-3	chr16	20325035	20326035	+	982.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183158)	promoter-TSS (NM_183158)	-131.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127777704-3	chr7	127777215	127778215	+	982.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178029, intron 1 of 18)	CpG	326.0	NM_178029	233904.0	Mm.435494	NM_010940	ENSMUSG00000042308	Setd1a	BC010250|KMT2F|Nsccn1|mKIAA0339|mNSC1	SET domain containing 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24426767-4	chr5	24426270	24427270	+	982.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253892)	promoter-TSS (NM_001253892)	-751.0	NM_001253892	20535.0	Mm.4580	NM_009207	ENSMUSG00000028962	Slc4a2	Ae2|B3RP	solute carrier family 4 (anion exchanger), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-67945536-4	chr14	67945016	67946016	+	982.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11944.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105165213-2	chr4	105164713	105165713	+	982.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 1 of 5)	intron (NM_080555, intron 1 of 5)	7866.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-5334142-4	chr5	5333646	5334646	+	982.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	ORR1D2|LTR|ERVL-MaLR	46105.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	17.5	28.5	13.5	17.0	36.5	23.0
Merged-chr15-97784874-4	chr15	97784366	97785366	+	982.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026353, intron 1 of 2)	CpG	501.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128913795-4	chr6	128913276	128914276	+	982.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVK26-int|LTR|ERVK	18069.0	NR_106107	102465757.0		NR_106107	ENSMUSG00000098359	Mir7649	mmu-mir-7649	microRNA 7649	ncRNA	4.0	17.0	4.5	5.0	13.5	19.5
Merged-chr2-45107759-4	chr2	45107277	45108277	+	982.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	2500.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47609384-4	chr17	47608877	47609877	+	982.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016859, intron 1 of 6)	L2|LINE|L2	2115.0	NM_016859	53414.0	Mm.472101	NM_016859	ENSMUSG00000023988	Bysl	Bys|Enp1	bystin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-55326759-4	chr9	55326271	55327271	+	982.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357568)	promoter-TSS (NM_001357568)	-142.0	NM_172923	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117856387-4	chr10	117855871	117856871	+	982.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10397.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	2.5	0.0	6.0	2.5	0.5	5.5
Merged-chr16-90743864-4	chr16	90743353	90744353	+	982.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029844, intron 1 of 2)	intron (NM_029844, intron 1 of 2)	5529.0	NM_029844	77037.0	Mm.22455	NM_029844	ENSMUSG00000039956	Mrap	1110025G12Rik|C21ORF61|Falp|ORF61	melanocortin 2 receptor accessory protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-126661192-4	chr3	126660677	126661677	+	982.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	64226.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	6.5	20.5	13.0	15.0	18.5	10.5
Merged-chr12-112620649-4	chr12	112620175	112621175	+	982.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 1 of 12)	intron (NM_007421, intron 1 of 12)	628.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127406667-7	chr7	127406115	127407115	+	982.214294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001167832, exon 1 of 3)	5' UTR (NM_001167832, exon 1 of 3)	207.0	NM_146203	233893.0	Mm.297097	NM_146203	ENSMUSG00000045757	Zfp764	8030466O12Rik	zinc finger protein 764	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-93128077-4	chr5	93127570	93128570	+	982.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009818, intron 1 of 9)	intron (NM_001009818, intron 1 of 9)	34654.0	NM_001347377	52398.0	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	1.5	0.0	2.5	0.5	2.0	0.0
Merged-chr4-117219044-4	chr4	117218551	117219551	+	982.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145637, intron 7 of 12)	intron (NM_001145637, intron 7 of 12)	32866.0	NM_001145637	381544.0	Mm.23504	NM_001033774	ENSMUSG00000060268	Armh1	1700012C08Rik|Gm1661|Gm1662|Ncrna00082	armadillo-like helical domain containing 1	protein-coding	0.0	0.0	1.5	0.0	8.0	0.5
Merged-chr14-60757456-4	chr14	60756944	60757944	+	982.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033272, intron 11 of 12)	intron (NM_001033272, intron 11 of 12)	-10690.0	NM_183175	239126.0	Mm.319636	NM_183175	ENSMUSG00000071347	C1qtnf9	9130217G22Rik|CTRP9|Ciqtnf9	C1q and tumor necrosis factor related protein 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132811103-4	chr7	132810595	132811595	+	982.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	2101.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58705518-4	chr15	58705058	58706058	+	982.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117869.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133873089-4	chr4	133872577	133873577	+	982.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009097, intron 2 of 21)	intron (NM_009097, intron 2 of 21)	1654.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	10.5	88.5	20.0	34.5	51.0	24.0
Merged-chr9-7272424-4	chr9	7271927	7272927	+	982.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008607)	promoter-TSS (NM_008607)	-87.0	NM_008607	17386.0	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120836641-2	chr7	120836141	120837141	+	982.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-6190.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-12906848-4	chr4	12906358	12907358	+	982.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173746)	promoter-TSS (NM_173746)	21.0	NM_001171801	208820.0	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120777707-4	chr5	120777216	120778216	+	982.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145226)	promoter-TSS (NM_145226)	-57.0	NM_145226	246727.0	Mm.204887	NM_145226	ENSMUSG00000032661	Oas3	Oasl10	2'-5' oligoadenylate synthetase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95141875-4	chr8	95141375	95142375	+	982.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010631, intron 1 of 19)	intron (NM_010631, intron 1 of 19)	665.0	NM_010631	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114883603-4	chr6	114883098	114884098	+	982.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 3 of 5)	intron (NM_001356371, intron 3 of 5)	38223.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61202081-4	chr10	61201559	61202559	+	982.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081127, intron 19 of 21)	intron (NM_001081127, intron 19 of 21)	26797.0	NM_023064	65971.0	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-3028771-2	chr9	3028251	3029251	+	982.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	9992.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105565523-4	chr8	105565009	105566009	+	982.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013477, intron 1 of 7)	intron (NM_013477, intron 1 of 7)	555.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160353956-4	chr2	160353437	160354437	+	982.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13128.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	15.0	40.0	39.5	10.5	39.5	34.5
Merged-chr11-46096935-4	chr11	46096418	46097418	+	982.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291890, intron 4 of 22)	intron (NM_001291890, intron 4 of 22)	-5352.0	NR_106177	102465996.0		NR_106177	ENSMUSG00000098942	Mir8100	Gm27638|mmu-mir-8100	microRNA 8100	ncRNA	0.0	0.0	1.5	3.0	0.5	0.0
Merged-chr11-114853291-4	chr11	114852779	114853779	+	982.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_147217, intron 1 of 3)	intron (NM_147217, intron 1 of 3)	1249.0	NM_147217	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38553637-4	chr15	38553150	38554150	+	982.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045757, intron 2 of 2)	ORR1A4|LTR|ERVL-MaLR	-34384.0	NM_018745	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12273060-4	chr13	12272498	12273498	+	982.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033268, intron 18 of 20)	ID2|SINE|ID	-14885.0	NM_001081128	238505.0	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-47056475-4	chr7	47055980	47056980	+	982.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5840.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121111343-4	chr8	121110857	121111857	+	982.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-2978.0	NM_001166482	234814.0	Mm.31690	NM_172761	ENSMUSG00000031816	Mthfsd	AW049977|BC052066|C920004D05	methenyltetrahydrofolate synthetase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136964796-4	chr6	136964226	136965226	+	982.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10203.0	NM_023898	78600.0	Mm.290622	NM_023898	ENSMUSG00000064330	Pde6h	A930033D18Rik|PDEgamma	phosphodiesterase 6H, cGMP-specific, cone, gamma	protein-coding	22.0	82.0	43.5	13.0	25.0	31.0
Merged-chr13-49203585-2	chr13	49203085	49204085	+	982.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_026738, intron 5 of 5)	intron (NM_026738, intron 5 of 5)	12441.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117844403-4	chr10	117843905	117844905	+	982.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	1569.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126729050-2	chr7	126728550	126729550	+	982.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A1|LTR|ERVL-MaLR	-24234.0	NM_009898	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34344252-2	chr17	34343752	34344752	+	982.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010381, intron 1 of 3)	intron (NM_010381, intron 1 of 3)	393.0	NM_010381	100504404.0	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	0.0	5.5	2.0	6.5	30.5	8.0
Merged-chr4-3775062-4	chr4	3774541	3775541	+	982.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	60077.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	30.5	41.0	36.5	9.0	24.5	20.0
Merged-chr18-56433283-4	chr18	56432794	56433794	+	982.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	1162.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38338175-4	chr6	38337663	38338663	+	982.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028864, intron 2 of 8)	intron (NM_028864, intron 2 of 8)	16440.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-185193721-4	chr1	185193209	185194209	+	982.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10459.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	8.0	5.0	12.0	6.0	6.5	13.5
Merged-chr14-61599537-4	chr14	61599022	61600022	+	982.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023233)	promoter-TSS (NM_023233)	10.0	NM_023233	66597.0	Mm.491258	NM_023233	ENSMUSG00000035235	Trim13	3110001L12Rik|CAR|LEU5|RNF77|Rfp2	tripartite motif-containing 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7142472-4	chr10	7141971	7142971	+	982.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172546, intron 5 of 12)	intron (NM_172546, intron 5 of 12)	69766.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	0.0	0.0	0.0	4.5	0.0	4.0
Merged-chr17-67384786-4	chr17	67384285	67385285	+	982.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-30294.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.0	2.0	3.0	0.0	0.0	0.0
Merged-chr17-84083625-6	chr17	84083092	84084092	+	982.055542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045458, intron 2 of 5)	intron (NR_045458, intron 2 of 5)	4932.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19105209-4	chr10	19104709	19105709	+	982.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36540.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.0	15.5	1.0	0.0	5.0	3.5
Merged-chr10-22000721-4	chr10	22000158	22001158	+	982.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001161850)	TTS (NM_001161850)	5992.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105384384-4	chr8	105383864	105384864	+	982.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301173, intron 15 of 15)	intron (NM_001301173, intron 15 of 15)	8983.0	NM_001081333	102075.0	Mm.32034	NM_175321	ENSMUSG00000014782	Plekhg4	4931414L13Rik|AI448583|mFLJ00068	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-9953116-4	chr1	9952613	9953613	+	982.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8995.0	NR_024067	73824.0	Mm.28311	NR_024067	ENSMUSG00000098234	Snhg6	1110008H02Rik	small nucleolar RNA host gene 6	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31758961-4	chr5	31758453	31759453	+	982.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 3 of 11)	intron (NM_144541, intron 3 of 11)	60903.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12592102-4	chr19	12591584	12592584	+	982.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015503, intron 1 of 1)	intron (NR_015503, intron 1 of 1)	4482.0	NR_015503	74333.0	Mm.329744	NR_015503	ENSMUSG00000086213	A330040F15Rik	-	RIKEN cDNA A330040F15 gene	ncRNA	5.5	29.5	10.5	3.5	1.0	2.0
Merged-chr13-4650413-4	chr13	4649905	4650905	+	982.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41241.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	0.0	1.5	0.0	3.5	7.0	1.0
Merged-chr13-37833716-4	chr13	37833203	37834203	+	982.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	6310.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	12.0	7.0	5.0	12.0	22.5	13.5
Merged-chr17-40708962-4	chr17	40708477	40709477	+	982.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur1|LINE|L1	-18143.0	NM_001038500	619517.0	Mm.391018	NM_001038500	ENSMUSG00000073396	Esp1	EG619517|Gm6084	exocrine gland secreted peptide 1	protein-coding	30.0	48.0	9.0	7.5	19.5	22.5
Merged-chr7-47074020-2	chr7	47073520	47074520	+	982.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9204.0	NR_106023	102465639.0		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16739150-2	chr7	16738650	16739650	+	982.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198613, intron 1 of 4)	intron (NM_198613, intron 1 of 4)	706.0	NM_198613	232910.0	Mm.333597	NM_198613	ENSMUSG00000008036	Ap2s1	AI043088	adaptor-related protein complex 2, sigma 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69892659-1	chr12	69892159	69893159	+	982.0	f0_balb.idr	promoter-TSS (NM_178628)	promoter-TSS (NM_178628)	-446.0	NM_178628	73991.0	Mm.474462	NM_178628	ENSMUSG00000021066	Atl1	4930435M24Rik|Adfsp|Fsp1|Spg3|Spg3a	atlastin GTPase 1	protein-coding	8.0	6.5	15.0	2.0	20.0	17.5
Merged-chr19-53315159-2	chr19	53314659	53315659	+	982.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	intron (NM_001360348, intron 1 of 5)	3714.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-125696433-3	chr2	125695891	125696891	+	982.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199022, intron 1 of 11)	intron (NM_199022, intron 1 of 11)	23291.0	NM_025613	58521.0	Mm.425101	NM_025613	ENSMUSG00000091337	Eid1	2610002K20Rik|Cri1|EID-1|ORF12|PNAS-22|PTD014	EP300 interacting inhibitor of differentiation 1	protein-coding	0.0	2.5	1.0	8.0	2.5	0.0
Merged-chr6-92092809-1	chr6	92092309	92093309	+	982.0	f0_balb.idr	5' UTR (NM_001347342, exon 1 of 15)	5' UTR (NM_001347342, exon 1 of 15)	376.0	NM_001347342	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111892491-2	chr8	111891991	111892991	+	982.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019950, intron 1 of 1)	intron (NM_019950, intron 1 of 1)	-15816.0	NM_025781	66817.0	Mm.345350	NM_025781	ENSMUSG00000031953	Tmem170	9030409E16Rik|AA403674|D8Bwg1414e|Tmem170a	transmembrane protein 170	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79407384-2	chr15	79406884	79407884	+	982.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-4081.0	NM_172608	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147471431-4	chr5	147470920	147471920	+	982.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028291, intron 4 of 18)	intron (NM_028291, intron 4 of 18)	41264.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	3.5	7.0	2.5	11.0	1.0	9.5
Merged-chr7-64048541-4	chr7	64048034	64049034	+	982.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-105301.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58795511-4	chr1	58795065	58796065	+	982.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009812, exon 1 of 9)	5' UTR (NM_009812, exon 1 of 9)	191.0	NM_009812	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-63894899-2	chr17	63894399	63895399	+	982.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286415, intron 1 of 17)	BGLII|LTR|ERVK	16833.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-55101338-4	chr3	55100824	55101824	+	982.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D1|LTR|ERVK	-10784.0	NM_001144988	229285.0	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|Spart|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr2-167921689-2	chr2	167921189	167922189	+	982.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10638.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-143213258-2	chr4	143212758	143213758	+	982.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081355)	promoter-TSS (NM_001081355)	-549.0	NM_001256380	110593.0	Mm.332020	NM_001081355	ENSMUSG00000057637	Prdm2	4833427P12Rik|E330024L24Rik|Gm1033|Gm19732|KMT8|Riz|Riz1|Znfpr1c1	PR domain containing 2, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144198887-2	chr2	144198387	144199387	+	982.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9597.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116135591-2	chr9	116135091	116136091	+	982.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	39772.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132340511-2	chr1	132340011	132341011	+	982.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	24386.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69502966-2	chr12	69502466	69503466	+	982.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27416.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	63.5	192.5	136.5	69.5	99.5	79.0
Merged-chr12-79007226-1	chr12	79006726	79007726	+	982.0	f0_balb.idr	promoter-TSS (NM_178745)	promoter-TSS (NM_178745)	51.0	NM_178745	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73934529-2	chr17	73934029	73935029	+	982.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 6 of 35)	intron (NM_011723, intron 6 of 35)	15667.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-80716200-4	chr1	80715700	80716700	+	982.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	42353.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180983233-4	chr1	180982737	180983737	+	982.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR22_Mus|LTR|ERVK	34332.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106936174-1	chr8	106935674	106936674	+	982.0	f0_balb.idr	exon (NM_009229, exon 1 of 7)	exon (NM_009229, exon 1 of 7)	424.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44504333-4	chr11	44503882	44504882	+	981.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14582.0	NM_028862	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	1.0	7.0	11.5	0.0	4.0	12.5
Merged-chr16-16574676-4	chr16	16574160	16575160	+	981.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	-14441.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88562575-4	chr1	88562064	88563064	+	981.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_037971)	TTS (NR_037971)	11047.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105986559-4	chr1	105986035	105987035	+	981.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151625, intron 2 of 2)	intron (NR_151625, intron 2 of 2)	3747.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	10.0	15.5	15.5	0.0	5.5	8.0
Merged-chr19-24990616-4	chr19	24990110	24991110	+	981.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8919.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	52.0	136.5	97.5	37.5	99.5	75.0
Merged-chr1-36357340-4	chr1	36356848	36357848	+	981.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172652, intron 5 of 20)	intron (NM_172652, intron 5 of 20)	-8590.0	NR_105863	102465541.0		NR_105863	ENSMUSG00000098680	Mir6898	Gm27816|mmu-mir-6898	microRNA 6898	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46339840-4	chr19	46339339	46340339	+	981.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1179.0	NM_001164292	67116.0	Mm.218848	NM_024192	ENSMUSG00000036748	Cuedc2	3010002G01Rik	CUE domain containing 2	protein-coding	23.5	98.0	53.5	23.5	69.5	47.0
Merged-chr2-18989036-4	chr2	18988538	18989538	+	981.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	9083.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124857248-3	chr8	124856778	124857778	+	981.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025615, intron 2 of 6)	MurERV4-int|LTR|ERVK	5751.0	NM_025615	66523.0	Mm.436864	NM_025615	ENSMUSG00000031984	2810004N23Rik	3110004G14Rik|Ayu21-55|Gt(pU21)55Imeg|GtAyu21-55	RIKEN cDNA 2810004N23 gene	protein-coding	4.5	14.0	4.0	38.5	98.5	65.0
Merged-chr17-10328598-4	chr17	10328165	10329165	+	981.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045461, intron 2 of 2)	intron (NR_045461, intron 2 of 2)	4063.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-39785544-7	chr15	39785034	39786034	+	981.9206539999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164466, intron 8 of 9)	intron (NM_001164466, intron 8 of 9)	-11511.0	NR_045788	100503072.0	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	-	predicted gene 16291	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64852883-4	chr5	64852373	64853373	+	981.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1|DNA|hAT-Tip100	49350.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-19971030-4	chr14	19970533	19971533	+	981.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285908, intron 1 of 3)	intron (NM_001285908, intron 1 of 3)	5660.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-44759233-4	chr18	44758730	44759730	+	981.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001085373, exon 2 of 19)	exon (NM_001085373, exon 2 of 19)	52952.0	NM_001085373	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	113.5	158.0	166.0	75.5	208.0	145.0
Merged-chr10-84571305-4	chr10	84570811	84571811	+	981.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5636.0	NM_146008	216198.0	Mm.296142	NM_146008	ENSMUSG00000020034	Tcp11l2	E430026E19Rik	t-complex 11 (mouse) like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr10-37397638-8	chr10	37397136	37398136	+	981.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-258710.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100500023-4	chr5	100499513	100500513	+	981.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359914, intron 1 of 13)	CpG	626.0	NM_172714	231506.0	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145211727-4	chr6	145211222	145212222	+	981.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177222)	promoter-TSS (NM_177222)	575.0	NM_001362057	67636.0	Mm.486359	NM_133688	ENSMUSG00000040370	Etfrf1	4930469P12Rik|AL022899|Ghiso|Lyrm5	electron transfer flavoprotein regulatory factor 1	protein-coding	228.0	501.5	519.0	121.5	359.5	337.5
Merged-chr1-43735530-4	chr1	43735020	43736020	+	981.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024283, intron 1 of 3)	MTD|LTR|ERVL-MaLR	4918.0	NM_024283	78896.0	Mm.50109	NM_024283	ENSMUSG00000026051	1500015O10Rik	Ecrg4	RIKEN cDNA 1500015O10 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113285137-4	chr6	113284643	113285643	+	981.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170673, intron 6 of 19)	intron (NM_170673, intron 6 of 19)	2836.0	NM_170673	211232.0	Mm.65597	NM_170673	ENSMUSG00000030270	Cpne9	A730016F12Rik|mKIAA4217	copine family member IX	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19216460-4	chr10	19215954	19216954	+	981.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Zaphod|DNA|hAT-Tip100	49216.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	18.5	53.0	40.5	18.5	54.5	39.0
Merged-chr15-84685660-3	chr15	84685153	84686153	+	981.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146061, intron 1 of 7)	intron (NM_146061, intron 1 of 7)	4655.0	NM_146061	109270.0	Mm.291372	NM_146061	ENSMUSG00000036106	Prr5	AU043908|Arhgap8|C030017C09Rik|C78947|Protor-1|Protor1	proline rich 5 (renal)	protein-coding	0.0	0.0	0.0	0.0	3.5	0.5
Merged-chr1-91259987-3	chr1	91259493	91260493	+	981.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355764, intron 3 of 10)	URR1A|DNA|hAT-Charlie	9427.0	NM_001355764	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	3.0	1.5	3.5	2.0	1.5	3.0
Merged-chr5-140736340-3	chr5	140735848	140736848	+	981.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	intron (NM_173405, intron 2 of 7)	12221.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108371636-4	chr6	108371077	108372077	+	981.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 13 of 61)	intron (NM_010585, intron 13 of 61)	-118166.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.0	0.0	2.0	0.0	6.5	1.5
Merged-chr11-67966441-4	chr11	67965948	67966948	+	981.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361351)	promoter-TSS (NM_001361351)	-10.0	NM_001361352	55943.0	Mm.3973	NM_018768	ENSMUSG00000020903	Stx8	0610007H08Rik|1110002H11Rik|4930571E13Rik|CARB	syntaxin 8	protein-coding	57.0	101.0	61.0	38.0	93.5	57.0
Merged-chr7-90055007-4	chr7	90054516	90055516	+	981.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25857.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	0.5	12.5	6.5	0.5	9.0	3.5
Merged-chr1-154104388-4	chr1	154103885	154104885	+	981.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	-96802.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-41765006-6	chr15	41764505	41765505	+	981.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 3 of 17)	intron (NR_152565, intron 3 of 17)	-23990.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-97962037-3	chr5	97961539	97962539	+	981.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133738, intron 11 of 16)	intron (NM_133738, intron 11 of 16)	68923.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110529190-4	chr9	110528679	110529679	+	981.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-3418.0	NM_001081340	235626.0	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79685621-2	chr15	79685121	79686121	+	981.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028792, intron 1 of 3)	intron (NM_028792, intron 1 of 3)	2251.0	NM_028792	74158.0	Mm.323393	NM_028792	ENSMUSG00000022426	Josd1	1300006C06Rik|mKIAA0063	Josephin domain containing 1	protein-coding	2.0	1.0	2.0	0.0	1.0	0.0
Merged-chr1-153918696-4	chr1	153918197	153919197	+	981.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18768.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125348628-4	chr5	125348133	125349133	+	981.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-7539.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	24.0	77.0	50.0	50.5	159.0	88.0
Merged-chr11-99187001-4	chr11	99186496	99187496	+	981.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31919.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0.5	5.0	6.5	2.5	10.5	2.0
Merged-chr8-104370607-4	chr8	104370143	104371143	+	981.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153582, intron 1 of 3)	L1MC4|LINE|L1	25164.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-127982227-4	chr8	127981765	127982765	+	981.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	295960.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	1.0	1.5	11.5	0.0	0.0	9.0
Merged-chr5-8349737-4	chr5	8349216	8350216	+	981.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	18444.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108401746-4	chr6	108401278	108402278	+	981.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 32 of 61)	intron (NM_010585, intron 32 of 61)	-87965.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23519654-3	chr13	23519154	23520154	+	981.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Gln-CAA|tRNA|tRNA	-11390.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90909171-4	chr5	90908668	90909668	+	981.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5269.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	1.0	7.0	2.0	0.0	6.0	3.0
Merged-chr19-16404573-4	chr19	16404069	16405069	+	981.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-31098.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9181231-4	chr13	9180729	9181729	+	981.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87348.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-105898936-4	chr14	105898395	105899395	+	981.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2076.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97818307-4	chr6	97817798	97818798	+	981.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	11240.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	35.5	35.0	43.0	28.0	56.5	31.5
Merged-chr9-31926035-4	chr9	31925546	31926546	+	981.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12761.0	NM_013800	12023.0	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-40971458-4	chr13	40970961	40971961	+	981.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155347, intron 1 of 4)	intron (NR_155347, intron 1 of 4)	-29549.0	NM_026550	68083.0	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128785133-4	chr4	128784622	128785622	+	981.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081098, intron 6 of 8)	intron (NM_001081098, intron 6 of 8)	20990.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61086384-4	chr18	61085890	61086890	+	981.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-19182.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75823983-4	chr2	75823476	75824476	+	981.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8201.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0.5	11.5	9.5	2.0	0.0	2.5
Merged-chr13-56711959-4	chr13	56711479	56712479	+	981.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164042, intron 1 of 6)	L1MB7|LINE|L1	8311.0	NM_001164042	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	11.0	18.0	24.5	5.5	17.5	10.5
Merged-chr1-65473346-4	chr1	65472852	65473852	+	981.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_A|LINE|L1	162095.0	NM_139270	213527.0	Mm.294225	NM_139270	ENSMUSG00000025946	Pth2r	Pthr2	parathyroid hormone 2 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24776407-4	chr13	24775894	24776894	+	981.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	-14457.0	NM_020567	57441.0	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152548172-4	chr1	152547676	152548676	+	981.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 8 of 17)	MTEb|LTR|ERVL-MaLR	77041.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45098997-3	chr7	45098504	45099504	+	981.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357117, intron 4 of 6)	B3|SINE|B2	4818.0	NM_001357117	14132.0	Mm.3303	NM_010189	ENSMUSG00000003420	Fcgrt	FcRn	Fc receptor, IgG, alpha chain transporter	protein-coding	0.0	17.0	20.0	11.0	20.5	27.5
Merged-chr3-152114989-3	chr3	152114487	152115487	+	981.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016867, intron 3 of 5)	intron (NM_016867, intron 3 of 5)	50913.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184853466-4	chr1	184852948	184853948	+	981.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7601.0	NM_133684	67247.0	Mm.177724	NM_133684	ENSMUSG00000073481	Marc2	2810484M10Rik|Mosc2|mARC1	mitochondrial amidoxime reducing component 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56699880-4	chr19	56699383	56700383	+	981.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22489.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71301019-4	chr17	71300510	71301510	+	981.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	10001.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	37.5	144.5	88.5	89.5	202.0	122.0
Merged-chr13-81230332-4	chr13	81229834	81230834	+	981.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 85 of 89)	intron (NM_054053, intron 85 of 89)	266260.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44126647-4	chr16	44126143	44127143	+	981.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	12616.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31131787-2	chr14	31131287	31132287	+	981.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2857.0	NM_001308464	66487.0	Mm.379116	NM_001308091	ENSMUSG00000058351	Smim4	2010107H07Rik|Gm41122	small integral membrane protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57768447-2	chr6	57767947	57768947	+	981.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 3 of 4)	intron (NM_146168, intron 3 of 4)	56678.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97359485-2	chr6	97358985	97359985	+	981.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	L1MC4|LINE|L1	99801.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127362619-4	chr2	127362100	127363100	+	981.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009633)	promoter-TSS (NM_009633)	-686.0	NM_009633	11552.0	Mm.347390	NM_009633	ENSMUSG00000058620	Adra2b	Adra-2b|[a]2B|a2b-AR|alpha2-C2|alpha2B	adrenergic receptor, alpha 2b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8569869-4	chr11	8569352	8570352	+	981.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	94683.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	2.0	0.0	0.0	1.5	1.0
Merged-chr17-6272180-3	chr17	6271678	6272678	+	981.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033178, intron 1 of 16)	intron (NM_001033178, intron 1 of 16)	1708.0	NM_001033178	77106.0	Mm.381893	NM_001033178	ENSMUSG00000038141	Tmem181a	5930418K15Rik|C76977|Gpr178|Tmem181|mKIAA1423	transmembrane protein 181A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-80310844-4	chr4	80310347	80311347	+	981.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-523366.0	NM_031202	22178.0	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding	16.0	13.5	23.0	16.5	14.5	13.0
Merged-chr13-49684164-4	chr13	49683656	49684656	+	981.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172015, intron 1 of 33)	intron (NM_172015, intron 1 of 33)	2026.0	NM_172015	105148.0	Mm.21118	NM_172015	ENSMUSG00000037851	Iars	2510016L12Rik|AI327140|AU044614|E430001P04Rik|ILRS	isoleucine-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55964192-4	chr4	55963695	55964695	+	981.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-431720.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8847853-4	chr11	8847325	8848325	+	981.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	163366.0	NM_001303610	15574.0	Mm.42201	NM_008316	ENSMUSG00000020413	Hus1	-	HUS1 checkpoint clamp component	protein-coding	0.0	0.0	2.0	0.0	0.0	5.0
Merged-chr5-122669300-4	chr5	122668799	122669799	+	981.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038845, intron 8 of 12)	B4A|SINE|B4	-13298.0	NR_106195	102465902.0		NR_106195	ENSMUSG00000099324	Mir8115	Gm28012|mmu-mir-8115	microRNA 8115	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-181232821-4	chr1	181232320	181233320	+	981.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20842.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-127151315-4	chr4	127150801	127151801	+	981.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17903.0	NM_198618	242667.0	Mm.331885	NM_198618	ENSMUSG00000042388	Dlgap3	BC058433|DAP-3|DAP3|Prpl8|Sapap3	DLG associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100878854-3	chr12	100878358	100879358	+	981.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001177673, exon 3 of 3)	exon (NM_001177673, exon 3 of 3)	20666.0	NM_001177674	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122087291-3	chr7	122086795	122087795	+	981.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028177, exon 5 of 5)	3' UTR (NM_028177, exon 5 of 5)	14553.0	NR_153798	70316.0	Mm.3014	NM_028177	ENSMUSG00000030869	Ndufab1	2210401F17Rik|2310039H15Rik|2610003B19Rik|8kDa|9130423F15Rik|ACP|CI-SDAP|SDAP	NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-39817206-4	chr15	39816722	39817722	+	981.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164466, intron 7 of 9)	intron (NM_001164466, intron 7 of 9)	20177.0	NR_045788	100503072.0	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	-	predicted gene 16291	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66831133-4	chr9	66830645	66831645	+	981.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026674, intron 2 of 5)	intron (NM_026674, intron 2 of 5)	3561.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40277832-4	chr12	40277322	40278322	+	981.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	54458.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138279428-2	chr4	138278919	138279919	+	981.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_010623, intron 5 of 14)	intron (NM_010623, intron 5 of 14)	17168.0	NM_010623	16559.0	Mm.271936	NM_010623	ENSMUSG00000028758	Kif17	5930435E01Rik|AW492270|Kif17b|mKIAA1405	kinesin family member 17	protein-coding	2.0	15.0	4.0	0.0	4.0	0.5
Merged-chr2-165884757-4	chr2	165884256	165885256	+	981.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252584)	promoter-TSS (NM_001252584)	82.0	NM_001252584	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-119880543-4	chr7	119880039	119881039	+	981.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163703, intron 1 of 2)	intron (NM_001163703, intron 1 of 2)	14919.0	NM_173408	233805.0	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	0.5	6.5	6.0	7.0	4.0	4.5
Merged-chr1-75251721-4	chr1	75251198	75252198	+	981.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359281, intron 19 of 22)	intron (NM_001359281, intron 19 of 22)	12073.0	NM_001359281	19275.0	Mm.2902	NM_008985	ENSMUSG00000026204	Ptprn	IA-2|mIA-A|mKIAA4064	protein tyrosine phosphatase, receptor type, N	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156065488-8	chr2	156064995	156065995	+	981.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_139151, exon 1 of 12)	exon (NM_139151, exon 1 of 12)	282.0	NM_139151	245865.0	Mm.330713	NM_139151	ENSMUSG00000038180	Spag4	1700041K21Rik|MNCb-0953|Sun4|mKIAA4118	sperm associated antigen 4	protein-coding	9.5	25.5	15.5	3.5	16.0	14.5
Merged-chr2-132029245-4	chr2	132028729	132029729	+	981.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175445, intron 1 of 10)	CpG	759.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-113422660-7	chr11	113422131	113423131	+	981.642883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027216, intron 5 of 9)	intron (NM_027216, intron 5 of 9)	143184.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	4.0	8.5	5.0	11.0	93.5	55.5
Merged-chr13-51136604-4	chr13	51136103	51137103	+	981.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011462, intron 1 of 3)	intron (NM_011462, intron 1 of 3)	2285.0	NM_011462	20729.0	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-107869873-4	chr5	107869370	107870370	+	981.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007964, intron 1 of 17)	intron (NM_007964, intron 1 of 17)	5237.0	NM_007964	14020.0	Mm.35796	NM_007964	ENSMUSG00000011831	Evi5	NB4S	ecotropic viral integration site 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129701674-4	chr4	129701173	129702173	+	981.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4828.0	NM_001356378	230770.0	Mm.257157	NM_199305	ENSMUSG00000053730	Tmem39b	6330509E05Rik|BC037095	transmembrane protein 39b	protein-coding	13.0	41.0	25.0	13.5	34.0	22.5
Merged-chr12-117586252-4	chr12	117585725	117586725	+	981.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 7 of 27)	intron (NM_175930, intron 7 of 27)	69746.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	1.0	6.0	7.0	5.0	10.0	0.0
Merged-chr10-41475458-2	chr10	41474958	41475958	+	981.625	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164433)	promoter-TSS (NM_001164433)	-856.0	NM_001164433	171580.0	Mm.290431	NM_138315	ENSMUSG00000019823	Mical1	MICAL|MICAL-1|Nical	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34092801-4	chr17	34092294	34093294	+	981.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046183, intron 2 of 4)	intron (NR_046183, intron 2 of 4)	415.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	39.0	100.0	58.5	18.0	44.5	16.5
Merged-chr5-65357150-4	chr5	65356653	65357653	+	981.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031180, intron 1 of 4)	Charlie21a|DNA|hAT-Charlie	8742.0	NM_031180	83379.0	Mm.45274	NM_031180	ENSMUSG00000029195	Klb	AV071179|betaKlotho	klotho beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24338457-4	chr13	24337943	24338943	+	981.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284519, intron 2 of 17)	MTEa|LTR|ERVL-MaLR	11039.0	NM_001111110	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28207725-4	chr17	28207234	28208234	+	981.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027185)	promoter-TSS (NM_027185)	-44.0	NM_027185	23853.0	Mm.204731	NM_027185	ENSMUSG00000002257	Def6	2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6	differentially expressed in FDCP 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-115332611-3	chr10	115332116	115333116	+	981.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCa|LINE|L1	-17025.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144004943-4	chr2	144004445	144005445	+	981.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	6318.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76114796-4	chr14	76114296	76115296	+	981.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013745, intron 3 of 9)	intron (NM_013745, intron 3 of 9)	3905.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6490311-4	chr11	6489786	6490786	+	981.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14210.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	5.0	0.0	0.0	0.0	0.5	1.0
Merged-chr3-8691766-8	chr3	8691283	8692283	+	981.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-24745.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79520904-4	chr11	79520373	79521373	+	981.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077496, intron 1 of 1)	intron (NM_001077496, intron 1 of 1)	2889.0	NM_001077496	216984.0	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	17.0	108.0	61.5	27.0	119.5	41.5
Merged-chr3-146154050-4	chr3	146153552	146154552	+	981.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 1 of 13)	intron (NM_001005846, intron 1 of 13)	3878.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39763678-4	chr18	39763194	39764194	+	981.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9803.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191850963-4	chr1	191850479	191851479	+	981.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	29506.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	12.0	26.0	27.0	25.5	25.0	40.5
Merged-chr2-30514982-4	chr2	30514472	30515472	+	981.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40773.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5568985-4	chr19	5568514	5569514	+	981.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033448, exon 2 of 2)	exon (NM_001033448, exon 2 of 2)	990.0	NM_001033448	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100087516-4	chr12	100087026	100088026	+	981.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24805.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41606965-4	chr13	41606442	41607442	+	981.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163572, intron 1 of 2)	intron (NM_001163572, intron 1 of 2)	726.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36133266-4	chr1	36132769	36133769	+	981.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	11044.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-72752211-4	chr11	72751708	72752708	+	981.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009671, exon 15 of 25)	exon (NM_009671, exon 15 of 25)	43631.0	NM_001024926	192986.0	Mm.194755	NM_001024926	ENSMUSG00000057778	Cyb5d2	9330151E16Rik|Gm2	cytochrome b5 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124022546-4	chr5	124022046	124023046	+	981.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	9714.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	137.0	287.0	249.5	121.5	295.5	183.0
Merged-chr3-26866787-4	chr3	26866314	26867314	+	981.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029150, intron 5 of 10)	RMER19B|LTR|ERVK	229183.0	NM_027583	70862.0	Mm.330943	NM_027583	ENSMUSG00000039335	Spata16	4921511F01Rik|4930503K02Rik|Nyd-sp12	spermatogenesis associated 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41086915-4	chr19	41086401	41087401	+	981.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011904, intron 19 of 20)	intron (NM_011904, intron 19 of 20)	-9788.0	NM_153520	226115.0	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70799484-2	chr8	70798984	70799984	+	981.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1349.0	NR_106099	102466823.0		NR_106099	ENSMUSG00000099031	Mir7240	Gm27487|mmu-mir-7240	microRNA 7240	ncRNA	1.5	0.0	5.0	0.0	0.0	3.5
Merged-chr2-157426332-3	chr2	157425831	157426831	+	981.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 1 of 13)	intron (NM_001025395, intron 1 of 13)	2038.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	3.0	12.0	9.0	3.5	14.5	7.0
Merged-chr7-80270075-2	chr7	80269575	80270575	+	981.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_178070, exon 1 of 23)	exon (NM_178070, exon 1 of 23)	420.0	NM_178070	233405.0	Mm.322870	NM_178070	ENSMUSG00000030534	Vps33b	-	vacuolar protein sorting 33B	protein-coding	0.5	1.5	0.0	0.5	1.0	0.5
Merged-chr13-37718531-4	chr13	37718015	37719015	+	981.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-107523.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	5.5	10.0	1.0	0.0	1.5
Merged-chr6-34709482-4	chr6	34708990	34709990	+	981.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145575)	promoter-TSS (NM_145575)	46.0	NM_145575	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-110940540-2	chr13	110940040	110941040	+	981.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36694.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31463270-2	chr16	31462770	31463770	+	981.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33494.0	NR_152205	100047123.0	Mm.466711	NR_152205		Gm15743	-	predicted gene 15743	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-104835028-2	chr12	104834528	104835528	+	981.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040682, intron 1 of 12)	intron (NM_001040682, intron 1 of 12)	30048.0	NR_104436	94040.0	Mm.244078	NM_053155	ENSMUSG00000021097	Clmn	9330188N17Rik|AI428889|AI788815|mKIAA1188	calmin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75151487-2	chr8	75150987	75151987	+	981.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41978.0	NM_008566	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25132526-4	chr7	25132020	25133020	+	981.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163555)	promoter-TSS (NM_001163555)	-60.0	NM_001163554	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55227283-4	chr19	55226765	55227765	+	981.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 8 of 20)	intron (NM_001081076, intron 8 of 20)	13971.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-51220756-4	chr17	51220270	51221270	+	981.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41418.0	NM_001285991	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49203978-2	chr13	49203478	49204478	+	981.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026738, exon 4 of 6)	exon (NM_026738, exon 4 of 6)	12048.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88563046-2	chr5	88562547	88563547	+	981.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1993.0	NM_001289774	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83292299-2	chr11	83291799	83292799	+	981.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_028363, intron 2 of 2)	intron (NR_028363, intron 2 of 2)	600.0	NR_028363	613254.0	Mm.383758	NR_028363	ENSMUSG00000093483	AA465934	-	expressed sequence AA465934	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136416448-4	chr1	136415952	136416952	+	981.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024328)	promoter-TSS (NR_024328)	-933.0	NR_024328	320054.0	Mm.208000	NR_024328	ENSMUSG00000097403	9230116N13Rik	-	RIKEN cDNA 9230116N13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32563762-2	chr4	32563262	32564262	+	981.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109661, intron 3 of 4)	MTC|LTR|ERVL-MaLR	7900.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	22.0	97.0	50.5	54.5	75.5	67.5
Merged-chr15-83040250-7	chr15	83039761	83040761	+	981.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6864.0	NM_001271411	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42018404-4	chr10	42017898	42018898	+	981.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034858)	promoter-TSS (NM_001034858)	-16.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103346860-4	chr11	103346364	103347364	+	981.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045346, exon 3 of 4)	non-coding (NR_045346, exon 3 of 4)	2111.0	NR_045346	653030.0	Mm.440684	NR_045346	ENSMUSG00000085887	Arhgap27os3	F830206d12rik|Gm11648	Rho GTPase activating protein 27, opposite strand 3	ncRNA	0.5	0.0	7.5	3.5	2.5	0.5
Merged-chr3-47885655-3	chr3	47885155	47886155	+	981.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	141104.0	NR_040408	666202.0	Mm.465057	NR_040408	ENSMUSG00000103257	Gm7977	EG666202	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide pseudogene	pseudo	2.5	0.0	3.5	5.0	2.0	6.0
Merged-chr11-70185327-3	chr11	70184842	70185842	+	981.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	18719.0	NM_010796	17312.0	Mm.252405	NM_010796	ENSMUSG00000000318	Clec10a	CD301a|M-ASGP-BP-1|Mgl|Mgl1	C-type lectin domain family 10, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92309764-7	chr5	92309229	92310229	+	981.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172713, intron 1 of 21)	CpG	295.0	NM_172713	231452.0	Mm.86564	NM_172713	ENSMUSG00000029415	Sdad1	4931421J16|AA591032|AW538460	SDA1 domain containing 1	protein-coding	82.5	130.0	123.0	72.0	100.5	116.0
Merged-chr13-51398881-4	chr13	51398358	51399358	+	981.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD2|LINE|L1	-9760.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145865539-4	chr6	145865014	145866014	+	981.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024469)	promoter-TSS (NM_024469)	-94.0	NM_001271768	79362.0	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52287624-4	chr2	52287136	52288136	+	981.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010889, intron 36 of 156)	intron (NM_010889, intron 36 of 156)	-3366.0	NR_040620	78049.0	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-108015357-4	chr13	108014878	108015878	+	981.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29096.0	NM_001048250	75616.0	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	2.5	0.0	2.5	11.0	4.0	3.5
Merged-chr9-45406286-4	chr9	45405844	45406844	+	981.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007503, intron 1 of 5)	(TG)n|Simple_repeat|Simple_repeat	267.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	6.5	8.5	15.0	1.5	0.0	8.0
Merged-chr13-41469725-4	chr13	41469224	41470224	+	981.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	17636.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86272907-4	chr15	86272399	86273399	+	981.408325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 4 of 12)	L1M4c|LINE|L1	-4776.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71208875-4	chr6	71208391	71209391	+	981.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9012.0	NM_017399	14080.0	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94760500-4	chr11	94760001	94761001	+	981.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001105561, intron 1 of 4)	intron (NM_001105561, intron 1 of 4)	681.0	NM_001105561	217122.0	Mm.24063	NM_183153		Gm11545	A430060F13Rik|C86086	predicted gene 11545	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91861527-4	chr16	91861013	91862013	+	981.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 25 of 28)	intron (NM_001110275, intron 25 of 28)	70117.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127831929-4	chr2	127831434	127832434	+	981.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113179)	promoter-TSS (NM_001113179)	-75.0	NM_009772	12235.0	Mm.2185	NM_009772	ENSMUSG00000027379	Bub1	AL022991|Bub1a|C80208|D2Xrf87	BUB1, mitotic checkpoint serine/threonine kinase	protein-coding	5.0	0.0	2.0	5.0	0.0	2.0
Merged-chr2-101679380-4	chr2	101678916	101679916	+	981.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303273, intron 1 of 6)	intron (NM_001303273, intron 1 of 6)	996.0	NM_001303273	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-59264199-4	chr3	59263710	59264710	+	981.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 35 of 43)	intron (NM_177855, intron 35 of 43)	-1225.0	NM_001357010	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	119.0	235.0	185.5	107.0	241.5	162.5
Merged-chr6-51525313-4	chr6	51524811	51525811	+	981.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361581, intron 1 of 6)	intron (NM_001361581, intron 1 of 6)	1051.0	NM_001361580	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	4.0	3.0	1.5	0.0	3.0	4.5
Merged-chr14-70205107-4	chr14	70204590	70205590	+	981.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271408)	promoter-TSS (NM_001271408)	-467.0	NM_001271408	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102192557-4	chr15	102192057	102193057	+	981.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359128, intron 3 of 15)	L2|LINE|L2	-3514.0	NM_144942	246277.0	Mm.296382	NM_144942	ENSMUSG00000023044	Csad	Csd	cysteine sulfinic acid decarboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116854708-2	chr11	116854201	116855201	+	981.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178620, intron 2 of 12)	intron (NM_178620, intron 2 of 12)	701.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	40.0	40.0	63.0	21.0	25.5	26.5
Merged-chr1-57850042-3	chr1	57849538	57850538	+	981.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164566, intron 1 of 11)	intron (NM_001164566, intron 1 of 11)	4467.0	NM_001164566	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	29.0	20.5	31.0	28.0	67.5	78.0
Merged-chr6-114358414-3	chr6	114357904	114358904	+	981.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-39532.0	NM_001317125	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17408302-4	chr6	17407789	17408789	+	981.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55668.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	9.0	7.0	3.5	1.5	6.0	1.0
Merged-chr17-88063067-4	chr17	88062572	88063572	+	981.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081034, intron 1 of 22)	intron (NM_001081034, intron 1 of 22)	1860.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19008813-3	chr10	19008333	19009333	+	981.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166402, intron 1 of 7)	intron (NM_001166402, intron 1 of 7)	3130.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	11.5	59.5	37.5	7.0	54.0	21.5
Merged-chr8-106148455-3	chr8	106147949	106148949	+	981.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1905.0	NM_133792	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-17999860-4	chr5	17999360	18000360	+	981.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 4 of 7)	intron (NM_001081143, intron 4 of 7)	37290.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-69861166-4	chr2	69860653	69861653	+	981.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355265)	promoter-TSS (NM_001355265)	-409.0	NM_001110145	20823.0	Mm.10508	NM_009278	ENSMUSG00000068882	Ssb	SS-B	Sjogren syndrome antigen B	protein-coding	51.5	118.0	81.5	37.0	66.5	66.0
Merged-chr12-116436373-4	chr12	116435898	116436898	+	981.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133762, intron 17 of 28)	Lx8|LINE|L1	30996.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	0.0	1.5	7.5	3.5	3.0	7.5
Merged-chr3-119806311-4	chr3	119805785	119806785	+	981.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-22897.0	NM_019550	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95941949-4	chr10	95941429	95942429	+	981.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001932, intron 1 of 28)	intron (NM_001001932, intron 1 of 28)	1266.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82857060-4	chr18	82856565	82857565	+	981.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_125720, intron 2 of 2)	MIRc|SINE|MIR	1168.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27378567-4	chr14	27378061	27379061	+	981.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 3 of 10)	intron (NM_027871, intron 3 of 10)	17172.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	19.0	28.0	14.0	12.0	20.0	14.0
Merged-chr16-76224140-6	chr16	76223601	76224601	+	981.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	101488.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78080364-4	chr11	78079869	78080869	+	981.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022313)	promoter-TSS (NM_022313)	14.0	NM_022313	57837.0	Mm.21096	NM_022313	ENSMUSG00000020832	Eral1	2610524P08Rik|9130407C09Rik|AU019798|Era|M-ERA|MERA-S|MERA-W	Era (G-protein)-like 1 (E. coli)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-32965354-4	chr13	32964872	32965872	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011454)	promoter-TSS (NM_011454)	-141.0	NM_011454	20708.0	Mm.36526	NM_011454	ENSMUSG00000042842	Serpinb6b	NK13|Spi12|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6b	protein-coding	5.5	0.5	1.5	0.0	0.0	0.5
Merged-chr15-59390466-4	chr15	59390004	59391004	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 2 of 4)	B1_Mm|SINE|Alu	16306.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102700937-4	chr2	102700429	102701429	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077514, intron 1 of 10)	intron (NM_001077514, intron 1 of 10)	-5509.0	NM_011393	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	19.5	22.5	10.0	32.5	35.5	19.5
Merged-chr15-78595001-4	chr15	78594497	78595497	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-2050.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-57433024-4	chr8	57432517	57433517	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22906.0	NM_009136	20284.0	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	0.0	0.0	1.0	0.0	4.5	5.0
Merged-chr19-29816362-4	chr19	29815848	29816848	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3374.0	NM_177721	240614.0	Mm.125503	NM_177721	ENSMUSG00000074909	Ranbp6	C630001B19	RAN binding protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128741159-4	chr2	128740686	128741686	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 4 of 18)	intron (NM_008587, intron 4 of 18)	42271.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	26.0	65.0	51.0	14.0	51.5	42.0
Merged-chr6-37223934-4	chr6	37223449	37224449	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	76027.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26352814-2	chr2	26352314	26353314	+	981.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001139504)	promoter-TSS (NM_001139504)	-704.0	NM_001139504	52838.0	Mm.31239	NM_026828	ENSMUSG00000075467	Dnlz	1110034G11Rik|D2Bwg1335e|HEP1	DNL-type zinc finger	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6459681-4	chr2	6459097	6460097	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106861.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135767673-4	chr7	135767171	135768171	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51292.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102285540-2	chr11	102285040	102286040	+	981.25	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001302505, exon 1 of 3)	5' UTR (NM_001302505, exon 1 of 3)	601.0	NM_001302505	72053.0	Mm.101274	NM_028076	ENSMUSG00000034757	Tmub2	2010008E23Rik	transmembrane and ubiquitin-like domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155562937-4	chr4	155562442	155563442	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159637)	promoter-TSS (NM_001159637)	561.0	NM_138671	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	49.5	154.5	82.5	48.5	141.0	57.5
Merged-chr19-59052218-4	chr19	59051712	59052712	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 2 of 16)	intron (NM_001114312, intron 2 of 16)	23857.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70576971-4	chr14	70576475	70577475	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360475)	promoter-TSS (NM_001360475)	-849.0	NM_153136	213484.0	Mm.34191	NM_153136	ENSMUSG00000045211	Nudt18	BC036718	nudix (nucleoside diphosphate linked moiety X)-type motif 18	protein-coding	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr7-141369081-4	chr7	141368573	141369573	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3963.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	12.5	21.0	6.5	9.0	12.5	9.5
Merged-chr4-133928937-6	chr4	133928421	133929421	+	981.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	39070.0	NM_016957	15331.0	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	41.5	90.0	68.5	28.5	76.5	66.5
Merged-chr4-53440869-3	chr4	53440374	53441374	+	981.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133891, intron 1 of 15)	CpG	461.0	NM_133891	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	4.0	14.5	4.0	2.5	6.5	6.5
Merged-chr5-138195178-4	chr5	138194648	138195648	+	981.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177878, exon 1 of 1)	exon (NM_177878, exon 1 of 1)	834.0	NM_177878	330216.0	Mm.19719	NM_177878	ENSMUSG00000049285	Mblac1	-	metallo-beta-lactamase domain containing 1	protein-coding	33.0	107.0	75.0	53.5	109.5	76.5
Merged-chr5-99237347-4	chr5	99236822	99237822	+	981.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145839, intron 4 of 13)	intron (NM_145839, intron 4 of 13)	15605.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69091241-4	chr8	69090730	69091730	+	981.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007509, intron 1 of 13)	intron (NM_007509, intron 1 of 13)	-2008.0	NM_153054	110877.0	Mm.19301	NM_153054	ENSMUSG00000036330	Slc18a1	4832416I10Rik|Vat1|Vmat1	solute carrier family 18 (vesicular monoamine), member 1	protein-coding	24.0	40.5	30.5	9.0	74.0	19.0
Merged-chr3-133335313-4	chr3	133334810	133335810	+	981.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293641, intron 5 of 11)	intron (NM_001293641, intron 5 of 11)	25200.0	NM_001293641	74776.0	Mm.210305	NM_146141	ENSMUSG00000028013	Ppa2	1110013G13Rik|Sid6306	pyrophosphatase (inorganic) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83454018-4	chr6	83453510	83454510	+	981.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347313, intron 2 of 11)	intron (NM_001347313, intron 2 of 11)	2382.0	NM_001347313	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57970354-4	chr15	57969855	57970855	+	981.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081396)	TTS (NM_001081396)	-15548.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103587873-4	chr3	103587370	103588370	+	981.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276676, intron 3 of 6)	intron (NM_001276676, intron 3 of 6)	11744.0	NM_001276681	54524.0	Mm.88818	NM_018800	ENSMUSG00000027849	Syt6	3110037A08Rik|AW048930|sytVI	synaptotagmin VI	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40707687-4	chr19	40707185	40708185	+	981.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	BGLII_B2|LTR|ERVK	47915.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	29.5	82.5	39.0	27.0	69.5	51.0
Merged-chr12-86817761-4	chr12	86817249	86818249	+	981.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67065.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140514117-4	chr5	140513615	140514615	+	981.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021528, intron 1 of 1)	B4A|SINE|B4	8506.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121392927-2	chr5	121392427	121393427	+	981.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5055.0	NM_172722	231713.0	Mm.33919	NM_172722	ENSMUSG00000042719	Naa25	4833422K13Rik|A630046C11|AI450868|C330023M02Rik|Mdm20	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding	0.0	0.0	4.0	1.5	0.5	0.0
Merged-chr16-36709014-3	chr16	36708514	36709514	+	981.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 2 of 7)	intron (NM_001285788, intron 2 of 7)	15036.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117209801-4	chr10	117209299	117210299	+	981.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14708.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117432638-4	chr10	117432128	117433128	+	981.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14807.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	0.0	1.0	1.5	0.0	6.0	5.5
Merged-chr8-111538370-4	chr8	111537867	111538867	+	981.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168623)	promoter-TSS (NM_001168623)	24.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	2.5	3.5	0.5	0.0	0.0	0.0
Merged-chr10-12919456-4	chr10	12918964	12919964	+	981.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038028, intron 2 of 2)	intron (NR_038028, intron 2 of 2)	3663.0	NR_038027	320273.0	Mm.417706	NR_038027	ENSMUSG00000097378	B230208H11Rik	-	RIKEN cDNA B230208H11 gene	ncRNA	1.0	3.5	2.0	1.0	0.0	1.5
Merged-chr7-114890293-4	chr7	114889796	114890796	+	981.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58354.0	NR_040317	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	0.0	2.0	0.5	1.5	4.0	3.0
Merged-chr13-46906141-4	chr13	46905653	46906653	+	981.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010617, intron 2 of 37)	intron (NM_010617, intron 2 of 37)	23565.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	79.5	155.5	110.5	27.5	30.5	36.5
Merged-chr18-49521708-4	chr18	49521215	49522215	+	981.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45-int|LTR|ERVK	-1574.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-69662358-4	chr18	69661855	69662855	+	981.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 15 of 19)	intron (NM_001361128, intron 15 of 19)	-263204.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-52000009-4	chr11	51999491	52000491	+	981.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009458, intron 1 of 5)	intron (NM_009458, intron 1 of 5)	475.0	NM_009458	22210.0	Mm.384918	NM_009458	ENSMUSG00000020390	Ube2b	E2-14k|HR6B|Rad6b|mHR6B	ubiquitin-conjugating enzyme E2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23305418-4	chr11	23304910	23305910	+	981.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1485.0	NM_001190401	17847.0	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120303126-3	chr14	120302615	120303615	+	981.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	-3337.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108784321-6	chr6	108783820	108784820	+	981.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026011, intron 1 of 6)	intron (NM_026011, intron 1 of 6)	1261.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	9.0	26.0	23.5	5.0	16.5	19.0
Merged-chr16-35768545-4	chr16	35768018	35769018	+	981.1083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	intron (NM_153550, intron 1 of 8)	838.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	5.5	40.0	34.5	21.5	53.5	30.0
Merged-chr1-191092510-7	chr1	191092006	191093006	+	981.095215	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5908.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	96.5	157.5	147.0	68.5	151.0	130.0
Merged-chr16-32533327-4	chr16	32532800	32533800	+	981.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37019.0	NM_199309	245308.0	Mm.76859	NM_199309	ENSMUSG00000052363	Zdhhc19	Gm1744|Gm616	zinc finger, DHHC domain containing 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-56222225-4	chr4	56221692	56222692	+	981.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	519233.0	NM_025271	11471.0	Mm.251434	NM_025271	ENSMUSG00000070980	Actl7b	Gm26657|Tact1	actin-like 7b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-10858080-4	chr8	10857582	10858582	+	981.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24372.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57898138-4	chr15	57897628	57898628	+	981.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5710.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75599947-4	chr18	75599458	75600458	+	981.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 6 of 11)	RMER1C|Other|Other	85313.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	4.0	15.0	5.5	10.5	6.5	6.0
Merged-chr4-144905289-4	chr4	144904796	144905796	+	981.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	12159.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68193056-3	chr10	68192478	68193478	+	981.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 3 of 9)	intron (NM_023598, intron 3 of 9)	85748.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-101740250-4	chr12	101739742	101740742	+	981.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21719.0	NM_001082976	74413.0	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding	10.0	10.0	12.5	3.5	17.0	13.0
Merged-chr13-101719657-6	chr13	101719150	101720150	+	981.048584	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	-27020.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45047550-4	chr2	45047039	45048039	+	981.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-24362.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68519559-4	chr11	68519055	68520055	+	981.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004435, intron 1 of 19)	intron (NM_001004435, intron 1 of 19)	16536.0	NR_126154	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39412271-4	chr10	39411760	39412760	+	981.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	42461.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93167233-4	chr2	93166731	93167731	+	981.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20317.0	NM_001356536	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56763572-4	chr17	56763077	56764077	+	981.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1174.0	NM_001360405	224907.0	Mm.293973	NM_144858	ENSMUSG00000007603	Dus3l	AI662135|AW557805	dihydrouridine synthase 3-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80114728-4	chr10	80114223	80115223	+	981.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-1080.0	NM_001301853	20869.0	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54360991-7	chr14	54360500	54361500	+	981.0285640000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026936, intron 1 of 9)	CpG	159.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	238.5	569.0	529.5	187.0	466.5	353.5
Merged-chr8-10831002-4	chr8	10830482	10831482	+	981.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51472.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-115692620-4	chr3	115692008	115693008	+	981.011902	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22547.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	21.0	44.5	34.5	6.0	48.0	17.5
Merged-chr5-43868019-5	chr5	43867601	43868601	+	981.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007646)	promoter-TSS (NM_007646)	-708.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	383.5	727.0	543.5	198.5	466.5	374.5
Merged-chr13-64373885-4	chr13	64373364	64374364	+	981.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3344.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	4.5	10.0	11.0	3.0	4.0	9.0
Merged-chr19-43771644-4	chr19	43771135	43772135	+	981.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-10673.0	NM_013806	12780.0	Mm.39054	NM_013806	ENSMUSG00000025194	Abcc2	AI173996|Abc30|Cmoat|Mrp2|cMRP	ATP-binding cassette, sub-family C (CFTR/MRP), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31435324-5	chr14	31434851	31435851	+	981.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 1 of 8)	CpG	749.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-80316166-1	chr2	80315666	80316666	+	981.0	f1_c57bl6.idr	intron (NM_024181, intron 1 of 22)	intron (NM_024181, intron 1 of 22)	700.0	NM_024181	66861.0	Mm.21762	NM_024181	ENSMUSG00000027006	Dnajc10	1200006L06Rik|D2Ertd706e|ERdj5|JPDI	DnaJ heat shock protein family (Hsp40) member C10	protein-coding	22.5	46.0	23.0	12.5	60.0	31.5
Merged-chr11-94212133-3	chr11	94211597	94212597	+	981.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009427, intron 1 of 1)	intron (NM_009427, intron 1 of 1)	643.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94648125-4	chr16	94647623	94648623	+	981.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	intron (NM_001113389, intron 2 of 11)	36704.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47910999-2	chr17	47910499	47911499	+	981.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028767, intron 1 of 16)	intron (NM_028767, intron 1 of 16)	13633.0	NM_028767	74123.0	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	0.0	0.0	0.0	1.5	0.0	2.5
Merged-chr17-50675418-4	chr17	50674973	50675973	+	981.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 5 of 5)	intron (NM_013880, intron 5 of 5)	-23208.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	79.0	54.5	74.0	38.0	53.5	44.0
Merged-chr2-174311125-2	chr2	174310625	174311625	+	981.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310085, intron 2 of 12)	intron (NM_001310085, intron 2 of 12)	13266.0	NM_001310085	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21268095-1	chr19	21267595	21268595	+	981.0	f1_balb.idr	Intergenic	Intergenic	-4183.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	6.5	11.0	2.5	7.0	0.0	14.5
Merged-chr7-73534992-3	chr7	73534476	73535476	+	981.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	6770.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	21.5	16.5	13.5	9.0	8.0	6.0
Merged-chr11-73107537-2	chr11	73107034	73108034	+	981.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361245, intron 2 of 30)	B2_Mm2|SINE|B2	16939.0	NM_172944	16407.0	Mm.96	NM_008399	ENSMUSG00000005947	Itgae	A530055J10|CD103|aM290|alpha-E1|alpha-M290	integrin alpha E, epithelial-associated	protein-coding	0.0	1.5	0.0	5.0	11.0	1.0
Merged-chr3-36478134-2	chr3	36477634	36478634	+	981.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028183, intron 1 of 2)	intron (NM_028183, intron 1 of 2)	2197.0	NM_028183	72282.0	Mm.55317	NM_028183	ENSMUSG00000027713	1810062G17Rik	-	RIKEN cDNA 1810062G17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-33816791-3	chr18	33816225	33817225	+	981.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013512, intron 18 of 23)	intron (NM_013512, intron 18 of 23)	21833.0	NR_038151	69749.0	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	0.0	0.0	5.0	2.0	4.5	3.5
Merged-chr12-59129769-3	chr12	59129276	59130276	+	981.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165254)	promoter-TSS (NM_001165254)	28.0	NM_001165254	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35520121-3	chr8	35519627	35520627	+	981.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24594.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	30.0	12.5	9.0	2.5	0.0	0.0
Merged-chr15-79505677-2	chr15	79505177	79506177	+	981.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008427)	promoter-TSS (NM_008427)	-436.0	NM_008427	16520.0	Mm.39759	NM_008427	ENSMUSG00000044216	Kcnj4	IRK3|Kcnf2|MB-IRK3	potassium inwardly-rectifying channel, subfamily J, member 4	protein-coding	0.0	0.0	0.0	0.0	3.0	3.0
Merged-chr1-85339926-1	chr1	85339426	85340426	+	981.0	f1_balb.idr	Intergenic	L1Md_A|LINE|L1	-69360.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83730725-4	chr17	83730277	83731277	+	981.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 3 of 16)	Lx8|LINE|L1	24614.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-4388652-3	chr10	4388149	4389149	+	981.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033466)	promoter-TSS (NM_001033466)	-541.0	NM_001033466	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	9.5	17.0	16.0	6.5	15.0	13.0
Merged-chr15-81102394-2	chr15	81101894	81102894	+	981.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	2653.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	46.5	168.0	119.0	68.0	125.0	106.0
Merged-chr4-155891412-2	chr4	155890912	155891912	+	981.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207223)	promoter-TSS (NM_207223)	350.0	NM_001033490	433813.0	Mm.259270	NM_001033490	ENSMUSG00000051557	Pusl1	2810021I11Rik|AI853843|D18346	pseudouridylate synthase-like 1	protein-coding	4.0	21.0	26.0	18.5	17.5	7.5
Merged-chr10-116565731-2	chr10	116565231	116566231	+	981.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359563, intron 1 of 13)	L1M4|LINE|L1	14805.0	NM_001359250	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4873220-4	chr18	4872733	4873733	+	981.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	60747.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105346702-1	chr5	105346202	105347202	+	981.0	f1_balb.idr	promoter-TSS (NM_001039647)	promoter-TSS (NM_001039647)	-226.0	NR_132129	634650.0	Mm.458435	NM_001039647	ENSMUSG00000092021	Gbp11	EG634650|Gm7141	guanylate binding protein 11	protein-coding	1.5	0.0	6.0	3.0	0.5	2.5
Merged-chr9-104490819-4	chr9	104490316	104491316	+	981.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64703.0	NR_035516	100316725.0		NR_035516	ENSMUSG00000089406	Mir2136	mmu-mir-2136	microRNA 2136	ncRNA	2.5	16.5	5.0	4.5	14.0	8.5
Merged-chr9-24500441-2	chr9	24499941	24500941	+	981.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359948, intron 1 of 22)	intron (NM_001359948, intron 1 of 22)	2699.0	NM_001359948	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62983012-2	chr9	62982512	62983512	+	981.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTAA)n|Simple_repeat|Simple_repeat	-2133.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-126950637-2	chr2	126950137	126951137	+	981.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17402.0	NM_023220	66552.0	Mm.269928	NM_023220	ENSMUSG00000027366	Sppl2a	2010106G01Rik|C130089K23Rik	signal peptide peptidase like 2A	protein-coding	0.0	2.0	0.5	7.0	0.0	0.0
Merged-chr11-117062817-2	chr11	117062317	117063317	+	981.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13966.0	NR_027059	76972.0	Mm.309167	NR_027059	ENSMUSG00000086859	Snhg20	2810008D09Rik	small nucleolar RNA host gene 20	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-143984088-2	chr1	143983588	143984588	+	981.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR18B_MM|LTR|ERVK	20061.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96636704-2	chr15	96636204	96637204	+	981.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166458, intron 1 of 15)	intron (NM_001166458, intron 1 of 15)	5258.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88675441-6	chr5	88674911	88675911	+	981.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178700, intron 1 of 9)	CpG	169.0	NM_001098476	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88248357-2	chr7	88247857	88248857	+	981.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29728.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-55167194-4	chr6	55166647	55167647	+	981.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7843.0	NM_009349	21743.0	Mm.299	NM_009349	ENSMUSG00000003477	Inmt	Temt	indolethylamine N-methyltransferase	protein-coding	10.0	7.5	5.0	1.5	5.0	13.0
Merged-chr3-110250181-4	chr3	110249712	110250712	+	980.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_024139, exon 1 of 2)	non-coding (NR_024139, exon 1 of 2)	787.0	NM_178891	99890.0	Mm.36115	NM_178891	ENSMUSG00000049300	Prmt6	AW124876|BB233495|Hrmt1l6	protein arginine N-methyltransferase 6	protein-coding	2.5	18.0	0.0	2.0	11.0	0.0
Merged-chr4-9074584-4	chr4	9074071	9075071	+	980.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-194722.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64095412-4	chr15	64094893	64095893	+	980.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 26 of 28)	intron (NM_001276461, intron 26 of 28)	-34945.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	9.5	11.0	19.0	5.5	13.0	10.5
Merged-chr3-21634993-4	chr3	21634516	21635516	+	980.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57E2|LTR|ERV1	-441636.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8768870-4	chr10	8768375	8769375	+	980.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	117195.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	12.0	9.5	7.0	4.5	7.5	7.5
Merged-chr12-73682892-4	chr12	73682393	73683393	+	980.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	98097.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79120388-8	chr3	79119949	79120949	+	980.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099624, intron 1 of 23)	intron (NM_001099624, intron 1 of 23)	24438.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	74.5	161.5	87.5	36.0	36.5	51.0
Merged-chr19-40305604-3	chr19	40305108	40306108	+	980.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034962, intron 20 of 22)	MIR3|SINE|MIR	-33992.0	NM_016861	54132.0	Mm.5567	NM_016861	ENSMUSG00000055044	Pdlim1	CLP36|Clim1|mClim1	PDZ and LIM domain 1 (elfin)	protein-coding	0.0	0.5	0.0	3.0	2.0	0.5
Merged-chr3-107110420-4	chr3	107109933	107110933	+	980.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008417, exon 3 of 3)	3' UTR (NM_008417, exon 3 of 3)	8866.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	15.0	17.5	22.0	9.5	13.0	16.0
Merged-chr4-129827935-4	chr4	129827427	129828427	+	980.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	7219.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	50.5	100.0	36.0	42.5	128.0	62.5
Merged-chr6-47943183-4	chr6	47942684	47943684	+	980.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027963)	promoter-TSS (NR_027963)	9.0	NR_027963	232785.0	Mm.482185	NR_027963	ENSMUSG00000072653	Zfp783	A230106D06Rik|Gm20494	zinc finger protein 783	ncRNA	0.0	0.0	3.0	6.0	0.0	0.5
Merged-chr3-119779407-4	chr3	119778891	119779891	+	980.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310711, intron 2 of 13)	L1ME2z|LINE|L1	3997.0	NM_001310711	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-37109543-4	chr14	37109019	37110019	+	980.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206684, intron 1 of 2)	intron (NM_001206684, intron 1 of 2)	582.0	NM_001206684	70045.0	Mm.271619	NM_001206684	ENSMUSG00000096001	2610528A11Rik	AW494830|Gpr15l	RIKEN cDNA 2610528A11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59967375-4	chr10	59966879	59967879	+	980.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15609.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41374777-4	chr19	41374277	41375277	+	980.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	10293.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	6.5	5.5	8.0	2.0	13.5	6.5
Merged-chr10-67582091-4	chr10	67581582	67582582	+	980.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10123.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-131272515-4	chr6	131272010	131273010	+	980.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20734.0	NM_001327860	66441.0	Mm.46623	NM_025564	ENSMUSG00000030188	Magohb	2010012C16Rik|Mago|Magoh|Magoh-rs1	mago homolog B, exon junction complex core component	protein-coding	5.5	6.5	5.0	3.0	13.5	10.5
Merged-chr13-23530400-4	chr13	23529927	23530927	+	980.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153173)	promoter-TSS (NM_153173)	-617.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61114549-2	chr18	61114019	61115019	+	980.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 6 of 21)	intron (NM_001037859, intron 6 of 21)	-2949.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	25.0	38.5	17.5	7.0	35.0	26.0
Merged-chr2-165453506-4	chr2	165453014	165454014	+	980.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054055, intron 1 of 12)	intron (NM_054055, intron 1 of 12)	19683.0	NM_054055	114644.0	Mm.250738	NM_054055	ENSMUSG00000018459	Slc13a3	NaDC-3|NaDC3|SDCT2	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	protein-coding	4.0	7.5	6.5	6.0	21.0	8.5
Merged-chr6-83017301-4	chr6	83016794	83017794	+	980.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 7 of 9)	L3|LINE|CR1	16177.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	11.5	13.0	7.5	5.0	7.0	5.0
Merged-chr13-12542271-4	chr13	12541788	12542788	+	980.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21838.0	NM_133643	171211.0	Mm.159671	NM_133643	ENSMUSG00000095105	Edaradd	1810032E07Rik|5830469M23Rik|A630043P06|cr	EDAR (ectodysplasin-A receptor)-associated death domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87540114-2	chr17	87539614	87540614	+	980.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-93179.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	0.0	1.5	1.5	4.5	6.0	12.5
Merged-chr10-60286182-2	chr10	60285682	60286682	+	980.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146124, intron 1 of 13)	intron (NM_001146124, intron 1 of 13)	1721.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28408042-4	chr17	28407533	28408533	+	980.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 8 of 10)	intron (NM_010220, intron 8 of 10)	-42817.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64212366-4	chr5	64211906	64212906	+	980.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-17951.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-36347132-4	chr8	36346624	36347624	+	980.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97608.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	3.0	6.0	1.0	1.0	0.0	0.0
Merged-chr12-85342548-4	chr12	85342034	85343034	+	980.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026775, exon 5 of 5)	3' UTR (NM_026775, exon 5 of 5)	-3172.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30769424-4	chr13	30768916	30769916	+	980.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	20183.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44415305-4	chr13	44414860	44415860	+	980.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-24367.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	32.5	57.0	49.0	30.0	32.5	38.5
Merged-chr7-101871534-4	chr7	101871059	101872059	+	980.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008034)	promoter-TSS (NM_008034)	-771.0	NM_001252552	14275.0	Mm.2135	NM_008034	ENSMUSG00000001827	Folr1	FBP1|Folbp-1|Folbp1	folate receptor 1 (adult)	protein-coding	4.5	39.0	39.5	5.0	37.5	41.0
Merged-chr16-21787823-4	chr16	21787301	21788301	+	980.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023737)	promoter-TSS (NM_023737)	33.0	NM_023737	74147.0	Mm.28100	NM_023737	ENSMUSG00000022853	Ehhadh	1300002P22Rik|HD|L-PBE|LBFP|LBP|MFP|MFP1|PBFE	enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-88954966-4	chr11	88954469	88955469	+	980.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029023, intron 1 of 12)	intron (NM_029023, intron 1 of 12)	473.0	NM_029023	74617.0	Mm.34126	NM_029023	ENSMUSG00000000278	Scpep1	2410018F01Rik|4833411K15Rik|AI957256|Risc	serine carboxypeptidase 1	protein-coding	337.0	621.0	456.5	197.0	374.5	304.5
Merged-chr10-19937114-4	chr10	19936611	19937611	+	980.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	2585.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	7.0	11.5	10.0	14.0	30.0	28.5
Merged-chr17-33771132-4	chr17	33770627	33771627	+	980.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	10448.0	NM_020581	57875.0	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	6.5	12.5	10.0	0.5	7.5	9.5
Merged-chr1-120076498-4	chr1	120075997	120076997	+	980.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-2717.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	19.0	65.0	49.0	39.0	68.5	31.5
Merged-chr2-121807116-4	chr2	121806612	121807612	+	980.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172673)	promoter-TSS (NM_172673)	-55.0	NM_172673	228564.0	Mm.121514	NM_172673	ENSMUSG00000027238	Frmd5	1500032A09Rik|A930004K21Rik|R75430	FERM domain containing 5	protein-coding	0.0	3.0	1.5	1.5	0.0	4.0
Merged-chr9-94605146-4	chr9	94604650	94605650	+	980.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64742.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-50612206-4	chr10	50611715	50612715	+	980.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 3 of 41)	intron (NM_198007, intron 3 of 41)	19546.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84622975-4	chr2	84622507	84623507	+	980.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355067, intron 1 of 15)	intron (NM_001355067, intron 1 of 15)	26473.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	10.5	17.0	7.5	0.5	36.5	14.0
Merged-chr9-114780348-7	chr9	114779649	114780649	+	980.785706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252479, intron 1 of 3)	intron (NM_001252479, intron 1 of 3)	1844.0	NM_133978	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	69.5	173.5	141.5	26.0	44.0	71.0
Merged-chr14-19745992-3	chr14	19745493	19746493	+	980.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5264.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-72286560-3	chr2	72286057	72287057	+	980.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 1 of 19)	intron (NM_023057, intron 1 of 19)	856.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95988288-3	chr3	95987825	95988825	+	980.755554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023320)	TTS (NM_023320)	2815.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	10.0	25.0	10.5	9.0	27.0	11.5
Merged-chr5-129779219-4	chr5	129778688	129779688	+	980.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_133900, exon 3 of 8)	5' UTR (NM_133900, exon 3 of 8)	8065.0	NM_133900	100678.0	Mm.271784	NM_133900	ENSMUSG00000029446	Psph	AI480570|PSP|PSPase	phosphoserine phosphatase	protein-coding	6.5	7.5	5.5	2.5	22.0	2.5
Merged-chr18-60210767-4	chr18	60210286	60211286	+	980.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1291.0	NM_001033767	240327.0	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58021114-2	chr15	58020614	58021614	+	980.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13180.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57764500-4	chr9	57763986	57764986	+	980.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007713, intron 1 of 12)	CpG	1374.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31119222-4	chr2	31118738	31119738	+	980.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 1 of 15)	intron (NM_001355105, intron 1 of 15)	-22738.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102387443-4	chr12	102386934	102387934	+	980.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 8 of 9)	intron (NM_177620, intron 8 of 9)	52379.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97182752-4	chr15	97182274	97183274	+	980.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15530.0	NR_155279	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29940629-4	chr6	29940109	29941109	+	980.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037740, intron 16 of 20)	intron (NM_001037740, intron 16 of 20)	23596.0	NM_001037740	320609.0	Mm.56097	NM_177204	ENSMUSG00000039629	Strip2	D330017J20Rik|Fam40b	striatin interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	2.5	3.0
Merged-chr8-61875479-4	chr8	61874964	61875964	+	980.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 2 of 21)	intron (NM_001293772, intron 2 of 21)	27226.0	NM_001081390	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	5.0	1.5	0.0	5.0	1.5	0.5
Merged-chr14-55079634-2	chr14	55079134	55080134	+	980.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039198, intron 1 of 9)	intron (NM_001039198, intron 1 of 9)	6543.0	NR_004444	432855.0	Mm.490799	NR_004444		Zfhx2os	Zfhx2as	zinc finger homeobox 2, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152687335-2	chr1	152686835	152687835	+	980.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	-62118.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130179376-4	chr2	130178918	130179918	+	980.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009225)	promoter-TSS (NM_009225)	-54.0	NM_009225	20638.0	Mm.88216	NM_009225	ENSMUSG00000027404	Snrpb	AL024368|AU018828|SM-B|SM11|SMB|SNRNP-B	small nuclear ribonucleoprotein B	protein-coding	52.0	78.5	79.5	56.5	74.0	67.5
Merged-chr19-23028401-4	chr19	23027900	23028900	+	980.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112826.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	8.5	2.5	3.5	1.5	8.5	3.0
Merged-chr2-102744114-4	chr2	102743606	102744606	+	980.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153852, exon 3 of 3)	non-coding (NR_153852, exon 3 of 3)	2654.0	NR_153852	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8823857-2	chr4	8823357	8824357	+	980.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 7 of 36)	intron (NM_001355382, intron 7 of 36)	72533.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-46854685-2	chr1	46854185	46855185	+	980.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356417, intron 2 of 10)	intron (NM_001356417, intron 2 of 10)	-1067.0	NM_172653	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25412690-10	chr15	25412178	25413178	+	980.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027395, intron 1 of 1)	CpG	1086.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55764578-5	chr14	55764024	55765024	+	980.7299800000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1438.0	NM_008519	16995.0	Mm.20853	NM_008519	ENSMUSG00000046908	Ltb4r1	BLT1|BLTR|Ltb4r|mBLTR	leukotriene B4 receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-89834643-3	chr13	89834144	89835144	+	980.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31A_Mm|LTR|ERVK	-92132.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	1.5	10.5	2.0	0.0	0.0	0.0
Merged-chr9-27023795-4	chr9	27023280	27024280	+	980.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178027, intron 1 of 5)	intron (NM_178027, intron 1 of 5)	6314.0	NM_178027	69091.0	Mm.218717	NM_178027	ENSMUSG00000031988	Vps26b	1810012I05Rik|2310075A12Rik|AI848392	VPS26 retromer complex component B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95674604-4	chr16	95674097	95675097	+	980.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27810.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45297134-4	chr4	45296628	45297628	+	980.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027266)	promoter-TSS (NM_027266)	-40.0	NM_027266	69934.0	Mm.46761	NM_027266	ENSMUSG00000035601	Trmt10b	2610042J10Rik|Rg9mtd3|Rnmtd3	tRNA methyltransferase 10B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78032230-4	chr11	78031733	78032733	+	980.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183286)	promoter-TSS (NM_183286)	-80.0	NM_183286	70451.0	Mm.390342	NM_183286	ENSMUSG00000020834	Dhrs13	2610209N15Rik	dehydrogenase/reductase (SDR family) member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140105944-4	chr5	140105454	140106454	+	980.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359025, intron 14 of 17)	intron (NM_001359025, intron 14 of 17)	68964.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128058055-4	chr2	128057564	128058564	+	980.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028765, intron 14 of 17)	intron (NM_028765, intron 14 of 17)	-67974.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-85283994-4	chr13	85283510	85284510	+	980.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145452, intron 1 of 24)	(TG)n|Simple_repeat|Simple_repeat	5476.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	2.5	1.0	0.5	5.0	4.5	0.5
Merged-chr11-18011344-4	chr11	18010866	18011866	+	980.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57396.0	NR_131915	102633673.0	Mm.396603	NR_131915	ENSMUSG00000086468	Etaa1os	2900053O20Rik|4930542E09Rik	Ewing tumor-associated antigen 1, opposite strand	ncRNA	2.0	1.0	0.0	0.5	0.0	0.0
Merged-chr14-103342062-4	chr14	103341527	103342527	+	980.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207215, intron 1 of 84)	intron (NM_207215, intron 1 of 84)	4773.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101133192-4	chr15	101132688	101133688	+	980.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277259, intron 3 of 11)	intron (NM_001277259, intron 3 of 11)	4666.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	64.5	143.0	75.0	60.5	138.0	127.0
Merged-chr2-58814665-4	chr2	58814171	58815171	+	980.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M8|LINE|L1	59487.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11016360-4	chr8	11015854	11016854	+	980.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046017, intron 1 of 4)	intron (NR_046017, intron 1 of 4)	-7924.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102223071-4	chr7	102222600	102223600	+	980.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145583)	promoter-TSS (NM_145583)	72.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	9.0	22.0	21.5	5.5	27.0	38.0
Merged-chr1-155049835-2	chr1	155049335	155050335	+	980.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	33429.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-38371900-4	chr3	38371402	38372402	+	980.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112914.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-64966324-4	chr12	64965849	64966849	+	980.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025707)	promoter-TSS (NM_025707)	607.0	NM_177805	328108.0	Mm.138465	NM_177805	ENSMUSG00000035614	Togaram1	A430041B07Rik|BC062107|C130034K06|Fam179b|mKIAA0423	TOG array regulator of axonemal microtubules 1	protein-coding	26.5	21.5	12.5	26.0	45.5	29.5
Merged-chr15-81103870-4	chr15	81103366	81104366	+	980.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	1181.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	78.0	214.5	149.0	118.5	233.0	191.5
Merged-chr13-100452595-4	chr13	100452117	100453117	+	980.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008670, intron 1 of 15)	intron (NM_008670, intron 1 of 15)	247.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5112633-3	chr6	5112144	5113144	+	980.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 8 of 15)	intron (NM_181595, intron 8 of 15)	81302.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-105490892-3	chr10	105490408	105491408	+	980.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177368, intron 1 of 11)	intron (NM_177368, intron 1 of 11)	83571.0	NM_177368	278279.0	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	3.0	15.0	12.0	4.5	4.5	8.5
Merged-chr8-108703895-2	chr8	108703395	108704395	+	980.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CCG)n|Simple_repeat|Simple_repeat	-10749.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	1.5	3.0	8.5	2.5	3.0	8.5
Merged-chr15-64061338-4	chr15	64060806	64061806	+	980.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144846)	promoter-TSS (NM_144846)	-858.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	12.5	26.5	16.5	12.5	26.5	16.5
Merged-chr16-55848045-4	chr16	55847558	55848558	+	980.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134457, intron 5 of 5)	intron (NM_001134457, intron 5 of 5)	-9417.0	NM_001159395	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39267155-4	chr10	39266632	39267632	+	980.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102667.0	NM_001122892	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58324236-4	chr15	58323709	58324709	+	980.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177755)	promoter-TSS (NM_177755)	-40.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	26.0	67.5	45.0	32.0	49.0	26.5
Merged-chr5-117890843-4	chr5	117890310	117891310	+	980.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 2 of 27)	C-rich|Low_complexity|Low_complexity	23971.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-76344954-3	chr10	76344444	76345444	+	980.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081419, intron 1 of 37)	CpG	347.0	NM_001081419	64451.0	Mm.33183	NM_001081419	ENSMUSG00000020231	Dip2a	4931420H10Rik|AI426328|Dip2|Kiaa0184-hp|mKIAA0184	disco interacting protein 2 homolog A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84388861-3	chr10	84388373	84389373	+	980.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 4 of 6)	intron (NM_001004363, intron 4 of 6)	51598.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-82899116-3	chr10	82898622	82899622	+	980.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	32496.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	42.5	78.5	82.5	21.5	20.5	20.0
Merged-chr17-50130539-4	chr17	50130045	50131045	+	980.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	59952.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	5.5	6.0	20.5	8.0	2.5	2.5
Merged-chr14-32121984-2	chr14	32121484	32122484	+	980.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20039.0	NM_020597	17695.0	Mm.2540	NM_020597	ENSMUSG00000021907	Msmb	PIP|PSP94|beta-MSP	beta-microseminoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34778644-4	chr2	34778129	34779129	+	980.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145522)	TTS (NM_145522)	6539.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-42832468-2	chr17	42831982	42832982	+	980.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009847, intron 5 of 17)	intron (NM_009847, intron 5 of 17)	43942.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	7.5	19.0	11.0	8.5	20.5	30.0
Merged-chr15-59649965-4	chr15	59649498	59650498	+	980.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144549, intron 1 of 2)	intron (NM_144549, intron 1 of 2)	1344.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86603923-4	chr11	86603435	86604435	+	980.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 9 of 11)	intron (NM_001356531, intron 9 of 11)	-19777.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94630291-4	chr13	94629791	94630791	+	980.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-158652.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91012717-4	chr12	91012213	91013213	+	980.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181815, intron 24 of 25)	intron (NM_181815, intron 24 of 25)	-33135.0	NR_045858	71349.0	Mm.442093	NR_045858	ENSMUSG00000085004	5430427M07Rik	-	RIKEN cDNA 5430427M07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31115706-4	chr6	31115196	31116196	+	980.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-52603.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102001118-4	chr5	102000612	102001612	+	980.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	68809.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	23.5	55.0	26.5	27.0	56.0	47.0
Merged-chr8-79168143-3	chr8	79167635	79168635	+	980.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 8 of 14)	intron (NM_001294279, intron 8 of 14)	80448.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166041897-4	chr2	166041408	166042408	+	980.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 2 of 22)	intron (NM_008679, intron 2 of 22)	49271.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	10.0	44.5	27.0	6.0	58.0	16.5
Merged-chr2-25628746-7	chr2	25628183	25629183	+	980.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007995)	promoter-TSS (NM_007995)	-709.0	NM_007995	14133.0	Mm.10510	NM_007995	ENSMUSG00000026938	Fcna	Fcn1	ficolin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129794127-3	chr4	129793569	129794569	+	980.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26410.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	5.5	21.5	10.5	6.5	13.5	12.0
Merged-chr5-146772168-4	chr5	146771676	146772676	+	980.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	22780.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	8.0	15.0	13.0	4.5	13.0	6.0
Merged-chr1-165669105-4	chr1	165668614	165669614	+	980.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	-34573.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-40835824-4	chr11	40835345	40836345	+	980.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-80559.0	NM_009831	12450.0	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	3.5	0.0	5.5	2.5	1.0	8.0
Merged-chr18-39319878-4	chr18	39319370	39320370	+	980.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 20 of 21)	intron (NM_001361073, intron 20 of 21)	167375.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	12.0	4.5	1.0	3.5	0.0	0.0
Merged-chr5-125380082-3	chr5	125379600	125380600	+	980.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9917.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	2.0	0.0	3.0	12.5	4.5	6.0
Merged-chr11-69063759-6	chr11	69063323	69064323	+	980.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4048.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139232627-4	chr4	139232122	139233122	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	38511.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	46.0	129.0	65.5	60.5	83.0	96.0
Merged-chr19-10059962-2	chr19	10059462	10060462	+	980.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_021890)	TTS (NM_021890)	18414.0	NM_021890	60527.0	Mm.253875	NM_021890	ENSMUSG00000024664	Fads3	AI464531	fatty acid desaturase 3	protein-coding	0.5	0.0	1.0	0.0	0.0	1.0
Merged-chr6-28867752-4	chr6	28867250	28868250	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 16 of 23)	intron (NM_019776, intron 16 of 23)	-36003.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100663577-2	chr15	100663077	100664077	+	980.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270537, intron 1 of 10)	RSINE1|SINE|B4	5923.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	9.5	2.0	3.5	25.5	14.0	5.5
Merged-chr3-84679075-4	chr3	84678581	84679581	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177260, intron 1 of 6)	intron (NM_177260, intron 1 of 6)	12889.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-58563300-4	chr14	58562809	58563809	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	490623.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101246244-2	chr11	101245744	101246744	+	980.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019444)	promoter-TSS (NM_019444)	-90.0	NM_019444	54409.0	Mm.260698	NM_019444	ENSMUSG00000001240	Ramp2	-	receptor (calcitonin) activity modifying protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-13543794-4	chr2	13543294	13544294	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010067, intron 1 of 10)	intron (NM_010067, intron 1 of 10)	870.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112327325-2	chr5	112326825	112327825	+	980.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018783, intron 1 of 13)	B1_Mur4|SINE|Alu	956.0	NM_018783	54723.0	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	2.5	6.0	0.0	6.0	5.5	7.0
Merged-chr2-116991565-2	chr2	116991065	116992065	+	980.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91413.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28671357-4	chr7	28670859	28671859	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-21490.0	NM_207238	233040.0	Mm.116116	NM_207238	ENSMUSG00000037463	Fbxo27	E130008B10Rik|FBG5|Gm161	F-box protein 27	protein-coding	10.5	20.5	22.0	5.0	17.0	14.0
Merged-chr8-10414990-2	chr8	10414490	10415490	+	980.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001319151, intron 16 of 34)	intron (NM_001319151, intron 16 of 34)	261079.0	NM_001319151	244281.0	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51981686-2	chr3	51981186	51982186	+	980.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	123320.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-68121289-2	chr8	68120696	68121696	+	980.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-146622.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	5.0	7.5	2.0	2.0	0.5	0.0
Merged-chr11-115491826-4	chr11	115491285	115492285	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015807)	promoter-TSS (NM_015807)	29.0	NM_015807	50773.0	Mm.390379	NM_015807	ENSMUSG00000020736	Nt5c	Dnt|Dnt1|Umph-2|Umph2	5',3'-nucleotidase, cytosolic	protein-coding	25.5	38.0	62.0	18.5	38.5	20.5
Merged-chr15-66818393-4	chr15	66817812	66818812	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	13517.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	5.0	20.5	4.5	16.5	7.0	16.5
Merged-chr16-4559932-4	chr16	4559421	4560421	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031182)	promoter-TSS (NM_031182)	-201.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79768136-2	chr10	79767636	79768636	+	980.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-1184.0	NR_027505	70294.0	Mm.466670	NM_144528	ENSMUSG00000035890	Rnf126	2610010O19Rik	ring finger protein 126	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142445050-2	chr5	142444550	142445550	+	980.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 2 of 8)	intron (NM_199068, intron 2 of 8)	-18881.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71102679-4	chr17	71102181	71103181	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083934, intron 24 of 36)	intron (NM_001083934, intron 24 of 36)	-80851.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	10.0	23.0	27.0	8.0	13.5	3.5
Merged-chr13-51399799-2	chr13	51399299	51400299	+	980.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-8819.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126625586-4	chr7	126625081	126626081	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019738)	promoter-TSS (NM_019738)	-111.0	NM_019738	56312.0	Mm.18742	NM_019738	ENSMUSG00000030717	Nupr1	2310032H04Rik|Com1|p8	nuclear protein transcription regulator 1	protein-coding	4.0	27.5	8.5	2.0	1.5	14.5
Merged-chr7-45461667-2	chr7	45461167	45462167	+	980.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007527)	TTS (NM_007527)	-1781.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0.0	5.0	8.0	5.5	1.5	5.0
Merged-chr10-127650953-2	chr10	127650453	127651453	+	980.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009284, exon 6 of 22)	exon (NM_009284, exon 6 of 22)	7967.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	0.0	0.0	0.0	5.5	0.5	0.0
Merged-chr9-101035670-2	chr9	101035170	101036170	+	980.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025835)	promoter-TSS (NM_025835)	-786.0	NM_025835	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	20.5	42.0	23.5	32.5	46.5	73.5
Merged-chr7-16848745-2	chr7	16848245	16849245	+	980.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001252458, exon 5 of 19)	exon (NM_001252458, exon 5 of 19)	5680.0	NM_178900	101540.0	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-15705919-2	chr9	15705419	15706419	+	980.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	-3819.0	NM_001357566	234967.0	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41283367-2	chr13	41282867	41283867	+	980.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33523.0	NM_001135577	108934.0	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-55783219-2	chr3	55782719	55783719	+	980.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010750, exon 1 of 1)	exon (NM_010750, exon 1 of 1)	709.0	NM_010750	17116.0	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70969417-2	chr11	70968917	70969917	+	980.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252413)	promoter-TSS (NM_001252413)	556.0	NM_172394	19069.0	Mm.288962	NM_172394	ENSMUSG00000040667	Nup88	Nup84|Prei2	nucleoporin 88	protein-coding	16.5	28.0	26.0	4.0	23.0	19.0
Merged-chr15-75888714-2	chr15	75888214	75889214	+	980.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282443)	promoter-TSS (NM_001282443)	9.0	NM_001282443	223645.0		NM_001282443	ENSMUSG00000098678	Mroh6	Gm19570	maestro heat-like repeat family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95984408-2	chr3	95983908	95984908	+	980.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1102.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	6.0	9.0	13.5	17.0	35.0	17.0
Merged-chr15-74958736-2	chr15	74958236	74959236	+	980.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164036, exon 4 of 4)	3' UTR (NM_001164036, exon 4 of 4)	3630.0	NM_001164040	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	5.0	35.0	19.5	22.0	64.5	22.0
Merged-chr10-81290043-2	chr10	81289543	81290543	+	980.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282095, intron 1 of 20)	intron (NM_001282095, intron 1 of 20)	1224.0	NM_013769	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74376470-8	chr1	74375928	74376928	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013612, intron 2 of 14)	intron (NM_013612, intron 2 of 14)	1225.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146794252-4	chr5	146793758	146794758	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	(CCCCAG)n|Simple_repeat|Simple_repeat	698.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67357317-2	chr17	67356817	67357817	+	980.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2826.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50227864-2	chr11	50227364	50228364	+	980.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145926, intron 1 of 14)	intron (NM_145926, intron 1 of 14)	2529.0	NM_145926	103534.0	Mm.86759	NM_145926	ENSMUSG00000036620	Mgat4b	AA407995|GnTIVb	mannoside acetylglucosaminyltransferase 4, isoenzyme B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64046506-4	chr15	64046009	64047009	+	980.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	13255.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114461819-6	chr7	114461318	114462318	+	980.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011055, intron 1 of 15)	intron (NM_011055, intron 1 of 15)	46564.0	NM_011055	18576.0	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	17.5	28.0	12.5	19.5	18.5	21.0
Merged-chr10-43919200-4	chr10	43918668	43919668	+	980.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152603, intron 4 of 7)	intron (NR_152603, intron 4 of 7)	17361.0	NM_130892	170728.0	Mm.390253	NM_130892	ENSMUSG00000019864	Rtn4ip1	D10Ertd690e|NIMP	reticulon 4 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-65378471-4	chr16	65377939	65378939	+	980.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-142190.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38981522-4	chr6	38981015	38982015	+	980.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	intron (NM_011539, intron 3 of 12)	62529.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-105810029-4	chr7	105809548	105810548	+	980.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025301, exon 3 of 3)	exon (NM_025301, exon 3 of 3)	1039.0	NM_025301	27397.0	Mm.44225	NM_025301	ENSMUSG00000030879	Mrpl17	MRP-L26|Rpml26	mitochondrial ribosomal protein L17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120830800-4	chr7	120830295	120831295	+	980.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12036.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103096866-3	chr14	103096354	103097354	+	980.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360342, intron 1 of 4)	intron (NM_001360342, intron 1 of 4)	2150.0	NM_001360341	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-128615634-3	chr1	128615159	128616159	+	980.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23360.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	22.0	31.0	9.5	32.5	42.5	38.5
Merged-chr6-71125349-2	chr6	71124849	71125849	+	980.4166869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19031.0	NM_001033929	232078.0	Mm.37547	NM_178413	ENSMUSG00000054474	Thnsl2	BC051244|TSH2	threonine synthase-like 2 (bacterial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105294120-4	chr5	105293618	105294618	+	980.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194336)	promoter-TSS (NM_194336)	-419.0	NM_194336	100702.0	Mm.491210	NM_194336	ENSMUSG00000104713	Gbp6	AI595338|Mpa2l	guanylate binding protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-89215925-4	chr7	89215437	89216437	+	980.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 5 of 14)	MTC|LTR|ERVL-MaLR	122850.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73142035-4	chr14	73141536	73142536	+	980.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170694)	promoter-TSS (NM_001170694)	-474.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67069163-4	chr10	67068656	67069656	+	980.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 1 of 7)	intron (NM_178606, intron 1 of 7)	27832.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18608977-4	chr2	18608472	18609472	+	980.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63490.0	NM_147778	12238.0	Mm.249586	NM_147778	ENSMUSG00000051154	Commd3	AW550818|Bup|D2Ertd542e	COMM domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34138238-4	chr10	34137735	34138735	+	980.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5|LINE|L1	-10263.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-11765106-4	chr15	11764624	11765624	+	980.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	140550.0	NM_008728	18162.0	Mm.25259	NM_008728	ENSMUSG00000022206	Npr3	ANP-C|ANPR-C|EF-2|NPR-C|lgj|stri	natriuretic peptide receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78450303-4	chr15	78449793	78450793	+	980.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355601, intron 10 of 17)	intron (NM_001355601, intron 10 of 17)	18341.0	NM_001355601	71753.0	Mm.34056	NM_027902	ENSMUSG00000016942	Tmprss6	1300008A22Rik	transmembrane serine protease 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84670752-4	chr2	84670254	84671254	+	980.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037279)	promoter-TSS (NM_001037279)	-46.0	NM_001037279	72657.0	Mm.259293	NM_001033166	ENSMUSG00000076437	Selenoh	2700094K13Rik|Selh	selenoprotein H	protein-coding	5.5	21.0	3.0	3.5	23.5	4.5
Merged-chr6-131244688-4	chr6	131244180	131245180	+	980.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008462, intron 2 of 7)	intron (NM_008462, intron 2 of 7)	2682.0	NM_001170851	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	47.0	109.5	67.0	41.5	102.0	59.0
Merged-chr12-25251927-4	chr12	25251419	25252419	+	980.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122745.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	3.5	8.5	1.0	0.0	0.0	4.0
Merged-chr1-138939882-4	chr1	138939364	138940364	+	980.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-23845.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120903464-4	chr11	120902975	120903975	+	980.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027745, intron 5 of 18)	intron (NM_027745, intron 5 of 18)	29397.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	8.5	4.0	16.0	2.5	4.0	1.5
Merged-chr14-25646302-4	chr14	25645818	25646818	+	980.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310666, intron 10 of 23)	intron (NM_001310666, intron 10 of 23)	42805.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	3.0	13.0	9.0	6.0	37.0	8.5
Merged-chr13-37873687-4	chr13	37873095	37874095	+	980.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	-14839.0	NR_033218	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120405604-4	chr4	120405146	120406146	+	980.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013883, intron 1 of 16)	CpG	365.0	NM_013883	29871.0	Mm.427014	NM_013883	ENSMUSG00000000085	Scmh1	AI315320|AI851618|Scml1|Scml3	sex comb on midleg homolog 1	protein-coding	9.5	25.0	11.0	2.0	33.5	13.5
Merged-chr11-103178320-4	chr11	103177804	103178804	+	980.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019679, intron 1 of 26)	intron (NM_019679, intron 1 of 26)	7166.0	NM_019679	57778.0	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32389836-4	chr18	32389326	32390326	+	980.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 1 of 17)	intron (NM_001360876, intron 1 of 17)	-11542.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60305419-4	chr10	60304915	60305915	+	980.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 65 of 68)	intron (NM_001252635, intron 65 of 68)	20954.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.0	0.0	0.0	2.0	3.0	0.0
Merged-chr8-4214551-4	chr8	4214039	4215039	+	980.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_207203, exon 6 of 7)	exon (NM_207203, exon 6 of 7)	2773.0	NM_207203	73072.0	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	0.0	0.0	0.0	1.0	1.5	1.0
Merged-chr15-59501672-4	chr15	59501157	59502157	+	980.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	127459.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	15.5	22.5	20.0	5.0	6.0	0.0
Merged-chr10-7600807-4	chr10	7600313	7601313	+	980.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359742, intron 3 of 5)	intron (NM_001359742, intron 3 of 5)	11013.0	NM_001359743	237253.0	Mm.206759	NM_172784	ENSMUSG00000019796	Lrp11	1700034J19Rik|6330533B21|9830160H19Rik	low density lipoprotein receptor-related protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76552841-2	chr15	76552341	76553341	+	980.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13898.0	NM_029643	52710.0	Mm.28597	NM_029643	ENSMUSG00000022560	Slc52a2	2010003P03Rik|D15Ertd747e|GPCR42|Gpr172b|PAR2|mRFT1	solute carrier protein 52, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90136996-4	chr7	90136498	90137498	+	980.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	B2_Mm1t|SINE|B2	6785.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	25.0	76.0	40.5	46.0	60.0	69.5
Merged-chr2-121484665-2	chr2	121484157	121485157	+	980.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10634.0	NM_001081975	100034361.0	Mm.270393	NM_001081975	ENSMUSG00000048222	Mfap1b	-	microfibrillar-associated protein 1B	protein-coding	5.0	0.0	1.0	0.0	0.0	2.0
Merged-chr17-86978670-4	chr17	86978181	86979181	+	980.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145491, intron 2 of 4)	ORR1A4|LTR|ERVL-MaLR	15570.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	13.5	16.5	17.0	5.5	13.0	24.0
Merged-chr9-120191527-2	chr9	120191027	120192027	+	980.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41785.0	NR_153959	17433.0	Mm.432562	NM_008614	ENSMUSG00000032517	Mobp	AI835053|AI839848|MOBP155|MOBP170|MOBP69|MOBP73|MOBP81|R74645	myelin-associated oligodendrocytic basic protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156730653-4	chr2	156730146	156731146	+	980.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042487, intron 1 of 6)	intron (NM_001042487, intron 1 of 6)	9367.0	NM_001042487	228836.0	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	DLG associated protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96001219-4	chr3	96000715	96001715	+	980.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013841, intron 14 of 14)	intron (NM_013841, intron 14 of 14)	-5376.0	NM_023320	67220.0	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44401890-3	chr19	44401386	44402386	+	980.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009127, exon 4 of 6)	exon (NM_009127, exon 4 of 6)	5823.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.0	0.0	0.0	3.5	0.0	0.0
Merged-chr3-84598147-4	chr3	84597643	84598643	+	980.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4569.0	NM_207278	403175.0	Mm.83086	NM_207278	ENSMUSG00000047819	Tigd4	C130063O11Rik|Gm418	tigger transposable element derived 4	protein-coding	0.0	5.0	0.0	0.0	0.0	0.0
Merged-chr11-73007931-2	chr11	73007431	73008431	+	980.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_008771, intron 1 of 11)	intron (NM_008771, intron 1 of 11)	8786.0	NM_008771	18436.0	Mm.25722	NM_008771	ENSMUSG00000020787	P2rx1	AI323649|BB122383|P2x|Pdcd3|RP-2	purinergic receptor P2X, ligand-gated ion channel, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117413362-4	chr11	117412858	117413858	+	980.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-1031.0	NR_132097	105827746.0	Mm.388009	NR_132097	ENSMUSG00000086588	Gm11729	-	predicted gene 11729	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28528178-4	chr17	28527677	28528677	+	980.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2684.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-118930741-4	chr12	118930248	118931248	+	980.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029961, intron 11 of 27)	intron (NM_029961, intron 11 of 27)	35673.0	NM_029961	77706.0	Mm.261496	NM_029961	ENSMUSG00000072791	Abcb5	9230106F14Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84582200-3	chr3	84581732	84582732	+	980.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293801, intron 1 of 7)	intron (NM_001293801, intron 1 of 7)	393.0	NM_001293801	99889.0	Mm.316536	NM_001081093	ENSMUSG00000074513	Arfip1	2310030I10Rik|Arfaptin|D3Ertd598e	ADP-ribosylation factor interacting protein 1	protein-coding	18.0	35.0	25.0	5.0	32.0	25.5
Merged-chr2-163918667-2	chr2	163918167	163919167	+	980.3333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183023)	promoter-TSS (NM_183023)	16.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	0.0	2.0	0.0	0.0	0.0	0.5
Merged-chr6-7800240-3	chr6	7799740	7800740	+	980.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-44984.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77868585-4	chr18	77868060	77869060	+	980.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 6 of 14)	ID2|SINE|ID	-69907.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89378695-6	chr3	89378244	89379244	+	980.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001355206, exon 4 of 4)	3' UTR (NM_001355206, exon 4 of 4)	8927.0	NM_001355212	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25426727-4	chr10	25426229	25427229	+	980.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013511, intron 1 of 19)	intron (NM_013511, intron 1 of 19)	18361.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	10.5	1.5	1.0	5.0	2.5	4.0
Merged-chr14-79482421-4	chr14	79481914	79482914	+	980.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 1 of 8)	intron (NM_007920, intron 1 of 8)	-1146.0	NM_018765	22380.0	Mm.476813	NM_018765	ENSMUSG00000022023	Wbp4	AW545037|BB101031|FBP21	WW domain binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128176658-4	chr10	128176160	128177160	+	980.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019711)	promoter-TSS (NM_019711)	-92.0	NM_019711	56516.0	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	7.0	36.0	12.0	18.0	31.5	27.5
Merged-chr18-77065792-4	chr18	77065302	77066302	+	980.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001164168, exon 1 of 14)	5' UTR (NM_001164168, exon 1 of 14)	122.0	NM_001164170	17344.0	Mm.6370	NM_008602	ENSMUSG00000025423	Pias2	6330408K17Rik|AI462206|ARIP3|AU018068|Dib|Miz1|PIASxalpha|PIASxb|PIASxbeta|SIZ2	protein inhibitor of activated STAT 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76192049-4	chr16	76191566	76192566	+	980.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER92-int|LTR|ERV1	69453.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74896600-4	chr11	74896116	74897116	+	980.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197943, intron 1 of 22)	CpG	464.0	NM_197943	97761.0	Mm.245894	NM_197943	ENSMUSG00000038351	Sgsm2	D630003G22Rik|R74628|Rutbc1|mKIAA0397	small G protein signaling modulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-38864211-4	chr12	38863776	38864776	+	980.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347379, intron 11 of 11)	intron (NM_001347379, intron 11 of 11)	80565.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116811837-4	chr11	116811319	116812319	+	980.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347633, intron 3 of 4)	intron (NM_001347633, intron 3 of 4)	16227.0	NM_026280	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	0.0	0.5	3.0	0.0	0.5	3.0
Merged-chr11-99073956-4	chr11	99073423	99074423	+	980.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172564, exon 7 of 13)	exon (NM_172564, exon 7 of 13)	15383.0	NM_172564	217169.0	Mm.262067	NM_172564	ENSMUSG00000017607	Tns4	9930017A07Rik|AA589547|AU016405|Cten	tensin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76194383-4	chr14	76193879	76194879	+	980.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57083.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53803267-4	chr11	53802765	53803765	+	980.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	32792.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4446786-4	chr2	4446272	4447272	+	980.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	45796.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65361160-4	chr9	65360635	65361635	+	980.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111145)	promoter-TSS (NM_001111145)	75.0	NM_001111145	208080.0	Mm.291862	NM_001111145	ENSMUSG00000086228	Ubap1l	Gm514	ubiquitin-associated protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106037123-4	chr1	106036633	106037633	+	980.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TAAA)n|Simple_repeat|Simple_repeat	46727.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35063525-4	chr18	35063026	35064026	+	980.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-55386.0	NM_009818	12385.0	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73532426-2	chr7	73531926	73532926	+	980.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	B1_Mus2|SINE|Alu	9320.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29546366-4	chr11	29545858	29546858	+	980.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133767)	TTS (NM_133767)	-1592.0	NM_028504	73324.0	Mm.69388	NM_028504	ENSMUSG00000020461	Clhc1	1700034F02Rik	clathrin heavy chain linker domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80209592-4	chr11	80209090	80210090	+	980.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163355, intron 1 of 19)	intron (NM_001163355, intron 1 of 19)	535.0	NM_021536	59040.0	Mm.489674	NM_021536	ENSMUSG00000017686	Rhot1	2210403N23Rik|AA415293|AF244542|AI834919|Arht1|C430039G08Rik|Miro1	ras homolog family member T1	protein-coding	12.5	3.0	1.0	3.0	13.5	7.0
Merged-chr13-63566368-4	chr13	63565895	63566895	+	980.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008957)	promoter-TSS (NM_008957)	-660.0	NM_008957	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5716961-4	chr13	5716471	5717471	+	980.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	141121.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75835650-4	chr15	75835163	75836163	+	980.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172121, intron 3 of 11)	intron (NM_172121, intron 3 of 11)	6245.0	NM_172121	223642.0	Mm.209800	NM_172121	ENSMUSG00000075600	Zc3h3	BC049953|Kiaa0150|Smicl|Zc3hdc3	zinc finger CCCH type containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-10876042-4	chr15	10875514	10876514	+	980.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	46963.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134152142-4	chr6	134151632	134152632	+	980.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	116432.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.0	4.0	0.0	0.0	0.0	2.0
Merged-chr1-177470317-4	chr1	177469789	177470789	+	980.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24468.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35192268-4	chr12	35191704	35192704	+	980.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2693.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	6.5	17.5	11.0	1.0	18.5	3.0
Merged-chr10-127739560-5	chr10	127739089	127740089	+	980.18573	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198035)	promoter-TSS (NM_198035)	51.0	NM_198035	320080.0	Mm.27258	NM_198035	ENSMUSG00000044617	Zbtb39	7030401O21Rik|mKIAA0352	zinc finger and BTB domain containing 39	protein-coding	0.0	2.5	4.5	0.0	8.5	4.0
Merged-chr3-7496750-4	chr3	7496247	7497247	+	980.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6679.0	NM_173181	67306.0	Mm.332366	NM_173181	ENSMUSG00000043542	Zc2hc1a	3110050N22Rik|AI790358|AU023959|Fam164a	zinc finger, C2HC-type containing 1A	protein-coding	8.0	23.0	6.0	5.5	25.0	1.0
Merged-chr12-70112989-4	chr12	70112489	70113489	+	980.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104397)	promoter-TSS (NR_104397)	-954.0	NR_104397	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	14.5	62.5	26.5	15.5	63.0	55.5
Merged-chr2-132111520-4	chr2	132111015	132112015	+	980.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	33593.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-111219850-3	chr5	111219350	111220350	+	980.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 6 of 22)	intron (NM_001267622, intron 6 of 22)	-110847.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	0.5	1.0	4.0	3.0	2.0	2.0
Merged-chr10-93567269-4	chr10	93566783	93567783	+	980.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359749, intron 5 of 13)	intron (NM_001359749, intron 5 of 13)	12402.0	NM_001359749	237465.0	Mm.477086	NM_175488	ENSMUSG00000036168	Ccdc38	4933417K05Rik	coiled-coil domain containing 38	protein-coding	0.0	5.5	2.0	0.0	8.5	1.5
Merged-chr16-93833742-4	chr16	93833234	93834234	+	980.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045529, intron 1 of 16)	intron (NM_001045529, intron 1 of 16)	1613.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	17.5	66.5	63.5	15.0	43.5	40.0
Merged-chr1-153510583-4	chr1	153510078	153511078	+	980.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028749, intron 10 of 11)	intron (NM_028749, intron 10 of 11)	-22918.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-95922990-3	chr5	95922477	95923477	+	980.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	-33962.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164486411-5	chr2	164485916	164486916	+	980.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026797)	promoter-TSS (NM_026797)	-39.0	NM_026797	52840.0	Mm.256927	NM_026797	ENSMUSG00000017734	Dbndd2	1110017A21Rik|2900022J10Rik|AU041050|AW048677|D2Bwg0891e|Nkip|R74724	dysbindin (dystrobrevin binding protein 1) domain containing 2	protein-coding	0.5	5.0	5.0	4.0	5.0	4.5
Merged-chr4-70546075-4	chr4	70545585	70546585	+	980.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-11157.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122246206-2	chr3	122245703	122246703	+	980.166626	f0_balb.idr|f0_c57.idr	intron (NM_008129, intron 1 of 6)	CpG	646.0	NM_008129	14630.0	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55508894-2	chr4	55508391	55509391	+	980.166626	f0_balb.idr|f1_balb.idr	Intergenic	MTEb|LTR|ERVL-MaLR	23584.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	15.5	13.0	7.5	51.5	58.0	38.0
Merged-chr7-30072733-5	chr7	30072176	30073176	+	980.159973	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177889, intron 1 of 6)	CpG	147.0	NM_177889	330502.0	Mm.295906	NM_177889	ENSMUSG00000098022	Zfp82	A030010D05|Krab16|Mszf3|Zfp-82	zinc finger protein 82	protein-coding	13.0	19.5	12.0	17.5	35.5	6.0
Merged-chr6-98993414-4	chr6	98992922	98993922	+	980.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 8 of 17)	intron (NM_001197321, intron 8 of 17)	34876.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39420172-7	chr6	39419623	39420623	+	980.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311109)	promoter-TSS (NM_001311109)	246.0	NM_018810	54484.0	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-75791015-4	chr13	75790522	75791522	+	980.1416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48863.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	11.5	35.5	9.5	8.5	17.0	7.5
Merged-chr11-32560602-4	chr11	32560107	32561107	+	980.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	27341.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	68.5	171.0	120.0	104.0	186.0	170.5
Merged-chr11-117200898-4	chr11	117200381	117201381	+	980.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 1 of 11)	intron (NM_001113486, intron 1 of 11)	1220.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128626378-4	chr10	128625866	128626866	+	980.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013765, intron 1 of 3)	CpG	140.0	NM_013765	27370.0	Mm.32118	NM_013765	ENSMUSG00000025362	Rps26	-	ribosomal protein S26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120307769-4	chr11	120307259	120308259	+	980.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39654.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-30593916-4	chr3	30593408	30594408	+	980.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	5962.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	0.0	0.0	0.0	0.0	8.0	8.0
Merged-chr8-80943977-4	chr8	80943474	80944474	+	980.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4A|LINE|L1	-63455.0	NM_001301298	14388.0	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	7.0	1.0	4.0	1.0	3.5	5.5
Merged-chr5-102003560-4	chr5	102002973	102003973	+	980.107178	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	66448.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	9.5	22.5	17.5	10.5	23.0	38.5
Merged-chr12-80835076-4	chr12	80834651	80835651	+	980.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178682, intron 2 of 5)	Lx5|LINE|L1	44619.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.0	1.5	2.5	0.0	0.5	1.0
Merged-chr9-35421456-4	chr9	35420963	35421963	+	980.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-30613.0	NM_021339	57810.0	Mm.80509	NM_021339	ENSMUSG00000038119	Cdon	CDO|Cd0|Orcam	cell adhesion molecule-related/down-regulated by oncogenes	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-79293966-4	chr18	79293479	79294479	+	980.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-184588.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13554947-4	chr9	13554392	13555392	+	980.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65097.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0.0	8.0	0.5	0.0	2.0	0.0
Merged-chr1-184590844-4	chr1	184590355	184591355	+	980.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33164.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76859451-4	chr11	76858951	76859951	+	980.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12443.0	NM_007754	12874.0	Mm.276736	NM_007754	ENSMUSG00000020841	Cpd	AA960140|AW322530|D830034L15Rik	carboxypeptidase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-86947731-3	chr10	86947232	86948232	+	980.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 17 of 68)	L2a|LINE|L2	60210.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90891188-5	chr5	90890691	90891691	+	980.080017	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008176)	promoter-TSS (NM_008176)	-54.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0.0	0.0	1.5	0.0	0.0	1.5
Merged-chr4-136450004-4	chr4	136449510	136450510	+	980.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-19751.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	20.5	20.0	38.5	41.5	106.0	96.0
Merged-chr16-30067023-4	chr16	30066544	30067544	+	980.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008235, exon 4 of 4)	exon (NM_008235, exon 4 of 4)	1687.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-123333303-4	chr3	123332796	123333796	+	980.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027135, intron 10 of 22)	intron (NM_027135, intron 10 of 22)	52694.0	NM_201638	210529.0	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding	134.5	188.5	172.5	52.5	76.5	74.5
Merged-chr11-106613980-4	chr11	106613472	106614472	+	980.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1042.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77816219-4	chr11	77815694	77816694	+	980.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291213, intron 2 of 40)	intron (NM_001291213, intron 2 of 40)	14896.0	NM_001291215	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41674488-4	chr10	41674002	41675002	+	980.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 8 of 47)	B4A|SINE|B4	41961.0	NM_001358562	75973.0	Mm.228517	NM_029493	ENSMUSG00000075225	Ccdc162	5033413D22Rik|Ccdc162p|Gm29096|Gm61|Gm6976	coiled-coil domain containing 162	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-99665624-4	chr6	99665161	99666161	+	980.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025829, intron 1 of 6)	intron (NM_025829, intron 1 of 6)	1110.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6782169-4	chr17	6781651	6782651	+	980.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 1 of 12)	intron (NM_009510, intron 1 of 12)	629.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	6.5	6.5	6.0	5.0	2.0	10.0
Merged-chr11-59518399-4	chr11	59517917	59518917	+	980.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11777.0	NM_172941	268417.0	Mm.239793	NM_172941	ENSMUSG00000020472	Zkscan17	Nizp1|Zfp496|Znf496	zinc finger with KRAB and SCAN domains 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73726172-4	chr15	73725613	73726613	+	980.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	1183.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-4355287-2	chr13	4354790	4355790	+	980.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR1B-int|LTR|ERV1	-75891.0	NM_013777	622402.0	Mm.27447	NM_013777	ENSMUSG00000021211	Akr1c12	AI266976|Akra	aldo-keto reductase family 1, member C12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120093719-4	chr1	120093221	120094221	+	980.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19941.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	2.0	5.5	1.5	0.0	0.0	0.0
Merged-chr13-36735077-2	chr13	36734572	36735572	+	980.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153529)	promoter-TSS (NM_153529)	-595.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	2.5	3.0	0.0	0.0	1.0	1.0
Merged-chr17-83903618-4	chr17	83903100	83904100	+	980.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49182.0	NR_155491	320021.0	Mm.379475	NR_155490		C430042M11Rik	-	RIKEN cDNA C430042M11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-10873622-1	chr4	10873122	10874122	+	980.0	f1_balb.idr	promoter-TSS (NM_026005)	promoter-TSS (NM_026005)	-876.0	NM_026005	67157.0	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	12.0	5.0	6.5	9.0	0.5	4.0
Merged-chr9-53704580-4	chr9	53704032	53705032	+	980.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175562, intron 1 of 1)	intron (NM_175562, intron 1 of 1)	1700.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23741010-2	chr17	23740474	23741474	+	980.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023824)	promoter-TSS (NM_023824)	-644.0	NM_023824	76498.0	Mm.491253	NM_023824	ENSMUSG00000023909	Paqr4	1500004C10Rik	progestin and adipoQ receptor family member IV	protein-coding	6.5	8.5	14.5	12.5	12.5	35.0
Merged-chr11-118165450-2	chr11	118164950	118165950	+	980.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001112699, exon 13 of 13)	3' UTR (NM_001112699, exon 13 of 13)	-36231.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86660750-4	chr6	86660240	86661240	+	980.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010751, intron 3 of 5)	intron (NM_010751, intron 3 of 5)	8419.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	4.0	0.5	4.0	6.5	3.0	3.5
Merged-chr16-33989797-2	chr16	33989297	33990297	+	980.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177357, exon 54 of 60)	exon (NM_177357, exon 54 of 60)	-22759.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-99401445-3	chr6	99400944	99401944	+	980.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053202, intron 1 of 18)	intron (NM_053202, intron 1 of 18)	33901.0	NM_053202	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-57953046-4	chr4	57952564	57953564	+	980.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011660, intron 1 of 4)	intron (NM_011660, intron 1 of 4)	3347.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92831499-2	chr1	92830999	92831999	+	980.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016696)	promoter-TSS (NM_016696)	-146.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55303315-4	chr12	55302803	55303803	+	980.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021529)	promoter-TSS (NM_021529)	-303.0	NM_021529	59032.0	Mm.427307	NM_021529	ENSMUSG00000021022	Ppp2r3c	4930511A21Rik|5730412A08Rik|G4-1|G5pr	protein phosphatase 2, regulatory subunit B'', gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126023756-4	chr4	126023347	126024347	+	980.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045561)	promoter-TSS (NR_045561)	-812.0	NR_045561	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145019447-3	chr4	145018910	145019910	+	980.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 66 of 69)	intron (NM_001276465, intron 66 of 69)	126273.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45106629-6	chr2	45106165	45107165	+	980.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	3612.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98662252-1	chr11	98661752	98662752	+	980.0	f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-2099.0	NM_021347	57911.0	Mm.458085	NM_021347	ENSMUSG00000017204	Gsdma	BB149167|Gsdm|Gsdm1|Gsdma1|H312E	gasdermin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97320623-2	chr6	97320032	97321032	+	980.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 12 of 23)	ID_B1|SINE|B4	-67752.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	2.0	3.5	1.0	4.0	2.0	2.5
Merged-chr4-6364653-2	chr4	6364153	6365153	+	980.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-1027.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	3.5	3.0	1.0	0.0	1.0	0.0
Merged-chr5-124582735-4	chr5	124582226	124583226	+	980.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181410, intron 2 of 12)	intron (NM_181410, intron 2 of 12)	3578.0	NM_181410	209357.0	Mm.185467	NM_181410	ENSMUSG00000029387	Gtf2h3	34kDa|5033417D07Rik|BTF2|BTF2 p34|C730029A10|D5Ertd679e|TFIIH	general transcription factor IIH, polypeptide 3	protein-coding	0.0	6.0	11.5	0.0	11.0	7.0
Merged-chr8-22498128-3	chr8	22497638	22498638	+	980.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011394, intron 1 of 10)	intron (NM_011394, intron 1 of 10)	-21259.0	NM_001146117	102032.0	Mm.378231	NM_001012667	ENSMUSG00000031534	Smim19	AI316807|BG694986|EST-c39	small integral membrane protein 19	protein-coding	0.0	3.5	6.0	0.5	1.0	0.0
Merged-chr18-66519399-4	chr18	66518912	66519912	+	980.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15234.0	NR_040528	100503565.0	Mm.98256	NR_040528		Gm9926	-	predicted gene 9926	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-28540790-1	chr10	28540290	28541290	+	980.0	f0_balb.idr	intron (NM_001359356, intron 13 of 30)	intron (NM_001359356, intron 13 of 30)	-127570.0	NM_001305663	210757.0	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-92899722-3	chr13	92899170	92900170	+	980.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54883.0	NM_001162945	382793.0	Mm.296770	NM_001162945	ENSMUSG00000021704	Mtx3	4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514	metaxin 3	protein-coding	12.0	18.5	12.5	0.0	0.0	1.0
Merged-chr15-97834006-2	chr15	97833506	97834506	+	980.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	-2239.0	NM_001204276	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-179847938-4	chr1	179847435	179848435	+	980.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43920.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3141904-3	chr11	3141366	3142366	+	980.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 21 of 32)	intron (NM_030207, intron 21 of 32)	17845.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37605879-4	chr1	37605374	37606374	+	980.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-64858.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-83910986-6	chr10	83910510	83911510	+	979.984131	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	188145.0	NM_001145198	69784.0	Mm.271188	NM_001145198	ENSMUSG00000087651	1500009L16Rik	2700050C19Rik|OCC-1	RIKEN cDNA 1500009L16 gene	protein-coding	15.0	9.0	8.5	0.0	3.0	3.0
Merged-chr4-88696629-4	chr4	88696126	88697126	+	979.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5358.0	NM_008336	15974.0	Mm.377093	NM_008336	ENSMUSG00000100079	Ifnab	-	interferon alpha B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62970514-4	chr9	62970011	62971011	+	979.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 1 of 13)	intron (NM_019663, intron 1 of 13)	10368.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146798223-4	chr5	146797725	146798725	+	979.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3269.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	6.5	12.0	6.5	0.0	1.0	3.5
Merged-chr9-121919150-4	chr9	121918648	121919648	+	979.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2843.0	NM_010012	13124.0	Mm.20889	NM_010012	ENSMUSG00000050445	Cyp8b1	-	cytochrome P450, family 8, subfamily b, polypeptide 1	protein-coding	0.5	3.5	3.0	3.5	14.5	7.0
Merged-chr10-81404924-4	chr10	81404329	81405329	+	979.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008688, exon 8 of 10)	exon (NM_008688, exon 8 of 10)	-4746.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-70704629-4	chr2	70704188	70705188	+	979.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43179.0	NM_027352	70231.0	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124787178-3	chr6	124786669	124787669	+	979.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7442.0	NM_001302555	16977.0	Mm.3207	NM_013588	ENSMUSG00000030125	Lrrc23	4921537K05Rik|B7|Lrpb7	leucine rich repeat containing 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35780525-4	chr17	35780000	35781000	+	979.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045459, exon 3 of 3)	non-coding (NR_045459, exon 3 of 3)	8050.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	6.0	28.5	14.0	13.5	9.5	7.5
Merged-chr2-124703551-4	chr2	124703070	124704070	+	979.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	49989.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12640679-4	chr18	12640151	12641151	+	979.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2882.0	NM_028341	72747.0	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40040302-4	chr12	40039806	40040806	+	979.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2319.0	NM_001039515	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60020044-4	chr2	60019528	60020528	+	979.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 2 of 35)	MTE2b|LTR|ERVL-MaLR	105712.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84334464-4	chr17	84333957	84334957	+	979.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 27 of 37)	intron (NM_183021, intron 27 of 37)	131751.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-14939329-2	chr4	14938829	14939829	+	979.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356579, intron 3 of 5)	intron (NM_001356579, intron 3 of 5)	8688.0	NM_001243100	100038514.0	Mm.331495	NM_001243100		Gm11837	-	predicted gene 11837	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72547619-2	chr8	72547119	72548119	+	979.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_027485, intron 1 of 2)	CpG	691.0	NM_027485	70625.0	Mm.235885	NM_027485	ENSMUSG00000045248	Med26	5730493L18Rik|AI414941|AW495270|Crsp7	mediator complex subunit 26	protein-coding	6.0	19.0	18.5	16.0	17.5	16.5
Merged-chr1-88225875-2	chr1	88225375	88226375	+	979.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1145.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-48690804-4	chr2	48690297	48691297	+	979.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123312.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85691482-4	chr11	85690990	85691990	+	979.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	28254.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-87841774-4	chr10	87841282	87842282	+	979.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16483.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-118376633-4	chr5	118376139	118377139	+	979.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131412.0	NM_001081236	76792.0	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-40939226-4	chr13	40938720	40939720	+	979.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133219, intron 1 of 2)	intron (NM_133219, intron 1 of 2)	21586.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23799582-4	chr13	23799086	23800086	+	979.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7441.0	NM_144836	218103.0	Mm.24030	NM_144836	ENSMUSG00000036110	Slc17a2	C730032N17Rik|NPT3	solute carrier family 17 (sodium phosphate), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25474157-4	chr14	25473667	25474667	+	979.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	14982.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100304848-4	chr15	100304417	100305417	+	979.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027334)	promoter-TSS (NM_027334)	100.0	NM_027334	70152.0	Mm.488086	NM_027334	ENSMUSG00000054619	Mettl7a1	2210414H16Rik|3300001H21Rik|Aam-B|Mettl7a|UbiE1	methyltransferase like 7A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25322253-4	chr15	25321745	25322745	+	979.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91519.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-90973433-4	chr1	90972941	90973941	+	979.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3821.0	NM_008998	19329.0	Mm.279780	NM_008998	ENSMUSG00000026304	Rab17	AW413472	RAB17, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-45795871-4	chr11	45795376	45796376	+	979.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12207.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-34343221-4	chr14	34342738	34343738	+	979.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008133, intron 12 of 12)	intron (NM_008133, intron 12 of 12)	-1817.0	NR_027380	100041231.0	Mm.425871	NR_027380		Gm3219	-	B-cell CLL/lymphoma 7C pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62251235-4	chr11	62250724	62251724	+	979.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007413, intron 1 of 1)	intron (NM_007413, intron 1 of 1)	2240.0	NM_007413	11541.0	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50824316-4	chr14	50823773	50824773	+	979.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009351, exon 55 of 55)	exon (NM_009351, exon 55 of 55)	16357.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	33.5	69.5	62.0	22.0	19.0	34.0
Merged-chr4-155944483-4	chr4	155943988	155944988	+	979.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284312, intron 1 of 7)	intron (NM_001284312, intron 1 of 7)	330.0	NM_001284312	140499.0	Mm.371673	NM_021402	ENSMUSG00000023286	Ube2j2	1200007B18Rik|2400008G19Rik|5730472G04Rik|AL022923|NCUBE-2|Ubc6|Ubc6p	ubiquitin-conjugating enzyme E2J 2	protein-coding	76.0	233.5	177.0	36.0	119.0	97.5
Merged-chr7-46607904-4	chr7	46607405	46608405	+	979.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013789, intron 8 of 10)	intron (NM_013789, intron 8 of 10)	31902.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23284627-4	chr16	23284140	23285140	+	979.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-5830.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-105122963-4	chr9	105122467	105123467	+	979.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8838.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	26.5	67.0	62.0	58.5	113.0	53.5
Merged-chr4-149698571-5	chr4	149698089	149699089	+	979.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001164050, exon 1 of 24)	5' UTR (NM_001164050, exon 1 of 24)	119.0	NM_001164050	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	56.0	240.5	167.0	145.0	283.0	183.0
Merged-chr7-141491105-4	chr7	141490602	141491602	+	979.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252588, intron 4 of 7)	intron (NM_001252588, intron 4 of 7)	14722.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43576534-4	chr17	43576036	43577036	+	979.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	8085.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	4.0	6.0	12.5	5.5	16.0	9.5
Merged-chr7-101538722-4	chr7	101538230	101539230	+	979.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17072.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	80.5	157.0	106.5	65.5	151.0	116.5
Merged-chr7-25790801-4	chr7	25790310	25791310	+	979.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2077.0	NM_001190975	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101657912-4	chr11	101657416	101658416	+	979.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7625.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3698205-4	chr12	3697710	3698710	+	979.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 9 of 17)	B4|SINE|B4	-108770.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-114815544-4	chr9	114815060	114816060	+	979.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027294, intron 1 of 3)	intron (NM_027294, intron 1 of 3)	28592.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	0.0	0.0	2.0	2.0	0.0	5.0
Merged-chr4-99211837-4	chr4	99211337	99212337	+	979.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175029, intron 1 of 10)	intron (NM_175029, intron 1 of 10)	17690.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	31.5	86.0	52.5	16.5	80.0	35.0
Merged-chr7-111383876-4	chr7	111383380	111384380	+	979.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-261205.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-128044419-4	chr1	128043966	128044966	+	979.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 3 of 20)	intron (NM_001285945, intron 3 of 20)	58005.0	NM_027678	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120737453-4	chr8	120736972	120737972	+	979.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008320, intron 1 of 8)	intron (NM_008320, intron 1 of 8)	1114.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117958419-4	chr11	117957945	117958945	+	979.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10921.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51553225-4	chr3	51552667	51553667	+	979.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080793, intron 1 of 7)	intron (NM_080793, intron 1 of 7)	-6590.0	NR_033624	100039684.0	Mm.387178	NR_033624		5031434O11Rik	AI481280|Gm2370	RIKEN cDNA 5031434O11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99126479-7	chr15	99125962	99126962	+	979.761902	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139140)	promoter-TSS (NM_139140)	-383.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140608132-6	chr5	140607708	140608708	+	979.758301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008494, intron 1 of 7)	intron (NM_008494, intron 1 of 7)	867.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38381443-4	chr6	38380923	38381923	+	979.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153600)	promoter-TSS (NM_153600)	-101.0	NM_153600	264134.0	Mm.253446	NM_153600	ENSMUSG00000056832	Ttc26	9330141E21Rik|9430097H08Rik|Ift56|hop|hpy	tetratricopeptide repeat domain 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69127762-4	chr3	69127259	69128259	+	979.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008467)	promoter-TSS (NM_008467)	-667.0	NM_008467	16649.0	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	48.0	163.0	102.0	71.5	196.5	145.5
Merged-chr11-94328413-4	chr11	94327924	94328924	+	979.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027799, intron 1 of 4)	CpG	423.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3381888-4	chr5	3381337	3382337	+	979.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	37944.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	1.5	2.5	2.0	11.5	4.5	2.0
Merged-chr3-69633616-4	chr3	69633112	69634112	+	979.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34652.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	0.5	12.0	16.5	9.0	22.0	8.5
Merged-chr15-97908305-4	chr15	97907750	97908750	+	979.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009504)	promoter-TSS (NM_009504)	46.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97428270-4	chr11	97427784	97428784	+	979.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21876.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr19-40728919-4	chr19	40728411	40729411	+	979.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 7 of 9)	intron (NM_001304721, intron 7 of 9)	69141.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37443028-4	chr19	37442462	37443462	+	979.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8121.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	4.5	1.0	2.0	13.5	5.0	7.5
Merged-chr6-117816432-4	chr6	117815911	117816911	+	979.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24770.0	NM_001346649	232337.0	Mm.290847	NM_177684	ENSMUSG00000059689	Zfp637	AI646709|BC021601|Znf32	zinc finger protein 637	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54160844-4	chr6	54160332	54161332	+	979.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	-104026.0	NM_001311133	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	6.5	16.5	7.0	0.5	19.0	12.0
Merged-chr7-114164500-4	chr7	114164053	114165053	+	979.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	-46772.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	0.0	0.0	1.0	0.0	3.5	0.0
Merged-chr2-32590404-4	chr2	32589903	32590903	+	979.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011373, intron 2 of 4)	intron (NM_011373, intron 2 of 4)	3325.0	NM_011373	20448.0	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5680329-4	chr18	5679814	5680814	+	979.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360981, intron 2 of 8)	Lx9|LINE|L1	87667.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	5.0	2.0	0.0	0.0	0.0	0.5
Merged-chr10-81175188-4	chr10	81174704	81175704	+	979.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1427.0	NM_007907	13629.0	Mm.2903	NM_007907	ENSMUSG00000034994	Eef2	Ef-2	eukaryotic translation elongation factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-74555006-4	chr7	74554480	74555480	+	979.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023908)	promoter-TSS (NM_023908)	-200.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124857153-4	chr6	124856664	124857664	+	979.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013534, intron 1 of 14)	CpG	523.0	NM_013534	14789.0	Mm.35708	NM_013534	ENSMUSG00000023191	P3h3	BC016431|Grcb|Leprel2	prolyl 3-hydroxylase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57409883-4	chr17	57409362	57410362	+	979.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 7 of 22)	intron (NM_001355722, intron 7 of 22)	51176.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-63923660-3	chr15	63923176	63924176	+	979.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_029414, intron 9 of 10)	intron (NR_029414, intron 9 of 10)	9215.0	NR_029414	74460.0	Mm.390801	NR_029414	ENSMUSG00000100127	Gsdmcl-ps	4933426G20Rik	gasdermin C-like, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6721184-4	chr2	6720708	6721708	+	979.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	454.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40743851-4	chr9	40743292	40744292	+	979.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	-57481.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	21.0	49.5	45.5	157.0	225.5	163.5
Merged-chr10-28463939-3	chr10	28463441	28464441	+	979.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359356, intron 7 of 30)	intron (NM_001359356, intron 7 of 30)	-204419.0	NM_001305663	210757.0	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-81059043-4	chr1	81058540	81059540	+	979.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17910.0	NM_001356399	241134.0	Mm.313904	NM_172849	ENSMUSG00000054976	Nyap2	9430031J16Rik|Jr6|Kiaa1486	neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-99655799-6	chr6	99655320	99656320	+	979.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025829, intron 1 of 6)	ORR1E|LTR|ERVL-MaLR	10951.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35683721-3	chr8	35683226	35684226	+	979.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-94706.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	7.5	12.5	3.5	6.0	24.5	11.5
Merged-chr9-57421416-4	chr9	57420900	57421900	+	979.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152145, intron 3 of 6)	intron (NR_152145, intron 3 of 6)	18336.0	NM_001357913	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-67932772-3	chr14	67932248	67933248	+	979.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177780, intron 1 of 51)	intron (NM_177780, intron 1 of 51)	824.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30043513-4	chr14	30043011	30044011	+	979.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 45 of 46)	intron (NM_001083616, intron 45 of 46)	20878.0	NM_175343	218865.0	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	0.0	2.0	1.5	0.0	3.5	1.0
Merged-chr17-71250162-5	chr17	71249645	71250645	+	979.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164885)	TTS (NM_001164885)	45491.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	2.5	6.0	10.0	12.0	17.0	42.0
Merged-chr13-56609545-4	chr13	56609065	56610065	+	979.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009369)	promoter-TSS (NM_009369)	-21.0	NM_009369	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	3.5	13.0	12.0	2.0	5.5	2.0
Merged-chr6-113700923-2	chr6	113700423	113701423	+	979.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347356, intron 2 of 7)	intron (NM_001347356, intron 2 of 7)	3873.0	NM_001033463	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	14.0	8.5	5.5	7.0	1.5	7.5
Merged-chr14-40931308-4	chr14	40930797	40931797	+	979.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	16912.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27202079-4	chr3	27201550	27202550	+	979.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	19046.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134955335-2	chr1	134954835	134955835	+	979.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081307, intron 1 of 23)	intron (NM_001081307, intron 1 of 23)	605.0	NM_001081307	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-129940950-4	chr5	129940446	129941446	+	979.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_B_Mam|LINE|RTE-X	-1163.0	NM_001001327	69568.0	Mm.288718	NM_027121	ENSMUSG00000066735	Vkorc1l1	2310024K08Rik	vitamin K epoxide reductase complex, subunit 1-like 1	protein-coding	58.5	142.5	123.0	62.5	163.5	121.5
Merged-chr14-55778099-4	chr14	55777612	55778612	+	979.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080435, intron 10 of 25)	intron (NM_080435, intron 10 of 25)	5960.0	NM_080435	104110.0	Mm.287010	NM_080435	ENSMUSG00000022220	Adcy4	mKIAA4004	adenylate cyclase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77974551-4	chr10	77974051	77975051	+	979.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4099.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101069027-4	chr4	101068550	101069550	+	979.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183024)	promoter-TSS (NM_183024)	12.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129421448-4	chr6	129420963	129421963	+	979.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205363, intron 6 of 6)	MTC|LTR|ERVL-MaLR	12601.0	NM_001205364	232414.0	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122274953-4	chr5	122274424	122275424	+	979.6124880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9474.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120881318-3	chr9	120880800	120881800	+	979.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	33950.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122741013-4	chr10	122740515	122741515	+	979.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	MTC|LTR|ERVL-MaLR	61700.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	24.0	34.0	31.5	17.0	26.0	35.0
Merged-chr11-63135848-4	chr11	63135348	63136348	+	979.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302255, intron 3 of 4)	intron (NM_001302255, intron 3 of 4)	3045.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126721821-4	chr7	126721260	126722260	+	979.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-16944.0	NM_009898	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107205333-4	chr3	107204827	107205827	+	979.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	16405.0	NM_001111143	229697.0	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	2.5	10.0	5.0	3.0	0.5	4.5
Merged-chr6-29263770-4	chr6	29263282	29264282	+	979.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8706.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88436936-4	chr3	88436416	88437416	+	979.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163491, exon 15 of 15)	exon (NM_001163491, exon 15 of 15)	4035.0	NR_105978	102465611.0		NR_105978	ENSMUSG00000098655	Mir7011	Gm27677|mmu-mir-7011	microRNA 7011	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29166407-4	chr6	29165907	29166907	+	979.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1683.0	NM_133925	68272.0	Mm.40802	NM_026650	ENSMUSG00000029701	Rbm28	2810480G15Rik|AI503051	RNA binding motif protein 28	protein-coding	3.0	4.0	2.5	0.0	0.5	0.0
Merged-chr7-67985216-4	chr7	67984718	67985718	+	979.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 1 of 20)	L1MB3|LINE|L1	32961.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-92928373-4	chr12	92927870	92928870	+	979.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	516453.0	NR_126436	75295.0	Mm.243878	NR_126436	ENSMUSG00000113164	4930559C10Rik	-	RIKEN cDNA 4930559C10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-14035042-4	chr10	14034545	14035545	+	979.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	MER20|DNA|hAT-Charlie	68666.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	7.5	18.5	15.5	4.0	36.0	18.0
Merged-chr8-104116635-4	chr8	104116117	104117117	+	979.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 2 of 11)	intron (NM_009868, intron 2 of 11)	-10744.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30024886-4	chr16	30024404	30025404	+	979.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045878, intron 3 of 3)	intron (NR_045878, intron 3 of 3)	14575.0	NR_045878	71528.0	Mm.297640	NR_045878		9030404E10Rik	-	RIKEN cDNA 9030404E10 gene	ncRNA	5.0	3.5	12.5	3.0	3.5	7.0
Merged-chr6-127574195-4	chr6	127573681	127574681	+	979.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3794.0	NM_001033464	381812.0	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71315521-4	chr2	71315032	71316032	+	979.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 5 of 17)	intron (NM_172436, intron 5 of 17)	52022.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25980880-4	chr8	25980367	25981367	+	979.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029037, exon 5 of 5)	3' UTR (NM_029037, exon 5 of 5)	-4123.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	49.5	59.0	35.5	32.0	56.5	40.0
Merged-chr2-27739679-4	chr2	27739147	27740147	+	979.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 2 of 9)	intron (NM_001290481, intron 2 of 9)	29064.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-102846683-4	chr13	102846166	102847166	+	979.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 5 of 28)	intron (NM_175171, intron 5 of 28)	86411.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88030620-4	chr6	88030119	88031119	+	979.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293652, intron 1 of 7)	intron (NM_001293652, intron 1 of 7)	-10824.0	NM_001293654	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134115155-4	chr6	134114659	134115659	+	979.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	79459.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	102.5	214.5	129.5	45.0	72.0	55.0
Merged-chr13-94381619-4	chr13	94381117	94382117	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009680, intron 1 of 26)	intron (NM_009680, intron 1 of 26)	22657.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132683224-2	chr7	132682724	132683724	+	979.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 6 of 6)	intron (NM_029609, intron 6 of 6)	72581.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180104584-4	chr2	180104077	180105077	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133849)	promoter-TSS (NM_133849)	-170.0	NM_133849	99296.0	Mm.285360	NM_133849	ENSMUSG00000039059	Hrh3	AW049250|H3R|HH3R	histamine receptor H3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30865340-2	chr14	30864840	30865840	+	979.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028839, intron 3 of 7)	intron (NM_028839, intron 3 of 7)	-13917.0	NM_181390	66175.0	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	4.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10480628-2	chr16	10480128	10481128	+	979.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243760, intron 1 of 18)	intron (NM_001243760, intron 1 of 18)	556.0	NM_001302618	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70777926-2	chr8	70777426	70778426	+	979.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029440)	TTS (NR_029440)	1064.0	NR_029440	72093.0	Mm.271208	NR_029440		2010320M18Rik	-	RIKEN cDNA 2010320M18 gene	ncRNA	12.0	30.5	25.5	3.0	29.5	23.0
Merged-chr13-13329125-2	chr13	13328625	13329625	+	979.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	64499.0	NM_031999	83924.0	Mm.379269	NM_031999	ENSMUSG00000021306	Gpr137b	AI788917|AU016435|AW546472|C730041E01|C80550|C80741|D13Abb1e|Tm7sf1	G protein-coupled receptor 137B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-14971251-4	chr14	14970759	14971759	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195229, intron 29 of 34)	intron (NM_001195229, intron 29 of 34)	150444.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr7-100930857-2	chr7	100930357	100931357	+	979.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081116, exon 1 of 21)	exon (NM_001081116, exon 1 of 21)	1304.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr6-114659697-4	chr6	114659199	114660199	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 2 of 19)	intron (NM_001253718, intron 2 of 19)	16602.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16128928-4	chr19	16128422	16129422	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3909.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	1.0	9.5	3.0	1.0	6.5	3.5
Merged-chr2-35399098-2	chr2	35398598	35399598	+	979.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1924.0	NM_001272040	74854.0	Mm.159338	NM_001080709	ENSMUSG00000079421	4930402F06Rik	-	RIKEN cDNA 4930402F06 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-121508944-4	chr1	121508441	121509441	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010483)	TTS (NM_010483)	19524.0	NM_010483	15564.0	Mm.4833	NM_010483	ENSMUSG00000050534	Htr5b	5-Ht5b	5-hydroxytryptamine (serotonin) receptor 5B	protein-coding	33.5	119.0	105.0	23.0	65.5	45.0
Merged-chr2-104495615-2	chr2	104495115	104496115	+	979.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1126.0	NM_001145824	15259.0	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	0.0	0.0	1.0	3.5	0.0	0.0
Merged-chr10-57835635-2	chr10	57835135	57836135	+	979.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	41091.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146757434-4	chr5	146756899	146757899	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 3 of 8)	intron (NM_011669, intron 3 of 8)	37557.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34460259-4	chr1	34459741	34460741	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011206, intron 1 of 14)	intron (NM_011206, intron 1 of 14)	495.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55498239-2	chr12	55497739	55498739	+	979.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5592.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141857656-4	chr4	141857190	141858190	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025994)	TTS (NM_025994)	-11331.0	NM_001033875	76701.0	Mm.489680	NM_001033875	ENSMUSG00000062478	Ctrc	1810044E12Rik	chymotrypsin C (caldecrin)	protein-coding	19.5	91.5	68.5	22.5	35.5	35.0
Merged-chr3-96159646-2	chr3	96159146	96160146	+	979.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001025614, exon 12 of 12)	3' UTR (NM_001025614, exon 12 of 12)	-2324.0	NM_181409	194126.0	Mm.268536	NM_181409	ENSMUSG00000045934	Mtmr11	AI035306|BC051083|Cra	myotubularin related protein 11	protein-coding	0.5	6.0	6.5	0.0	0.0	3.5
Merged-chr12-52851000-4	chr12	52850512	52851512	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198111, intron 2 of 13)	intron (NM_198111, intron 2 of 13)	151629.0	NM_198111	238161.0	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	6.5	23.0	14.5	8.5	8.5	3.5
Merged-chr9-66886451-2	chr9	66885951	66886951	+	979.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	33254.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32352909-2	chr2	32352409	32353409	+	979.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010065, intron 1 of 20)	CpG	420.0	NM_001301737	13429.0	Mm.44736	NM_010065	ENSMUSG00000026825	Dnm1	AI838169|Dnm|Ftfl|mKIAA4093	dynamin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77397478-2	chr10	77396978	77397978	+	979.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024838, intron 1 of 11)	intron (NM_001024838, intron 1 of 11)	20795.0	NM_130895	110532.0	Mm.276815	NM_130895	ENSMUSG00000020262	Adarb1	1700057H01Rik|AW124433|AW558573|Adar2|BB220382|D10Bwg0447e|Red1	adenosine deaminase, RNA-specific, B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98619336-4	chr10	98618832	98619832	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-267465.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71684420-4	chr17	71683942	71684942	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177087, intron 1 of 19)	intron (NM_177087, intron 1 of 19)	11181.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65434373-2	chr9	65433873	65434873	+	979.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1409.0	NM_027134	69606.0	Mm.287956	NM_027134	ENSMUSG00000059183	Mtfmt	2310020P08Rik	mitochondrial methionyl-tRNA formyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90276392-4	chr9	90275900	90276900	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5631.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	109.0	168.0	169.5	72.0	146.0	101.5
Merged-chr17-78382903-5	chr17	78382453	78383453	+	979.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360407, intron 7 of 9)	intron (NM_001360407, intron 7 of 9)	35199.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-150598354-4	chr5	150597796	150598796	+	979.464294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	-3771.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-42306557-4	chr9	42306063	42307063	+	979.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42263.0	NM_172769	235293.0	Mm.32700	NM_172769	ENSMUSG00000032018	Sc5d	A830037K02|A830073K23Rik|Sc5dl	sterol-C5-desaturase	protein-coding	2.0	2.0	6.5	1.5	21.5	0.0
Merged-chr4-59806728-4	chr4	59806216	59807216	+	979.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	intron (NM_172468, intron 1 of 8)	1066.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124542613-4	chr6	124542101	124543101	+	979.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001097617)	promoter-TSS (NM_001097617)	-242.0	NM_001097617	50908.0	Mm.219527	NM_144938	ENSMUSG00000038521	C1s1	AA959438|AI255193|AI327365|C1s|C1sa	complement component 1, s subcomponent 1	protein-coding	0.0	4.0	2.0	7.0	9.0	0.0
Merged-chr4-132798122-4	chr4	132797636	132798636	+	979.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1772.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25498077-4	chr2	25497582	25498582	+	979.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027062)	TTS (NM_027062)	2424.0	NM_027062	69379.0	Mm.24596	NM_027062	ENSMUSG00000015083	C8g	-	complement component 8, gamma polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30550545-4	chr16	30550044	30551044	+	979.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172614)	promoter-TSS (NM_172614)	34.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20251420-4	chr11	20250940	20251940	+	979.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-2016.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	0.0	4.5	3.5	1.0	2.5	0.5
Merged-chr13-49292120-4	chr13	49291620	49292620	+	979.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 3 of 17)	L1M4c|LINE|L1	17088.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-58567289-4	chr18	58566788	58567788	+	979.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081072, intron 1 of 9)	Lx7|LINE|L1	11048.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	49.5	142.0	67.5	39.0	183.0	111.0
Merged-chr1-182951505-3	chr1	182951005	182952005	+	979.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3283.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	5.5	0.0	1.0	0.0	9.0	0.0
Merged-chr3-109031661-3	chr3	109031142	109032142	+	979.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-4035.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62185129-3	chr11	62184628	62185628	+	979.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029936, intron 10 of 12)	intron (NM_001029936, intron 10 of 12)	-63856.0	NM_007413	11541.0	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-24467858-4	chr18	24467362	24468362	+	979.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3009.0	NM_026529	68046.0	Mm.276574	NM_026529	ENSMUSG00000024273	2700062C07Rik	AI195775|C87515	RIKEN cDNA 2700062C07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94935335-4	chr8	94934838	94935838	+	979.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033468, intron 6 of 11)	MLT1K|LTR|ERVL-MaLR	11644.0	NM_001145972	382045.0	Mm.334726	NM_001033468	ENSMUSG00000061577	Adgrg5	Gm1109|Gpr114|PGR27	adhesion G protein-coupled receptor G5	protein-coding	0.0	0.0	0.0	4.5	0.0	1.0
Merged-chr11-79527508-4	chr11	79526998	79527998	+	979.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033711, exon 2 of 2)	exon (NM_001033711, exon 2 of 2)	3111.0	NM_146023	101488212.0	Mm.439665	NM_146023	ENSMUSG00000070354	Evi2	Evi2a-evi2b|Gm21975	ecotropic viral integration site 2	protein-coding	5.0	18.5	6.0	4.0	13.0	9.0
Merged-chr9-98330334-3	chr9	98329832	98330832	+	979.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357445, intron 1 of 3)	intron (NM_001357445, intron 1 of 3)	33762.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180401332-4	chr1	180400824	180401824	+	979.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-70775.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167922051-4	chr2	167921560	167922560	+	979.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10267.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155122063-2	chr1	155121563	155122563	+	979.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22427.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16885362-7	chr7	16884826	16885826	+	979.404785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081655, exon 4 of 4)	exon (NM_001081655, exon 4 of 4)	-6460.0	NM_010320	14709.0	Mm.103770	NM_010320	ENSMUSG00000063594	Gng8	G(y)8	guanine nucleotide binding protein (G protein), gamma 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-17641066-3	chr18	17640570	17641570	+	979.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60080.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73038586-4	chr2	73038098	73039098	+	979.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58152.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-69223653-4	chr17	69223153	69224153	+	979.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	53553.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4283890-4	chr19	4283396	4284396	+	979.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026720)	promoter-TSS (NM_026720)	-759.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-65064803-4	chr14	65064305	65065305	+	979.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360385, intron 3 of 5)	RMER10B|LTR|ERVL	33301.0	NM_018788	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0.0	2.5	0.0	0.0	0.0	0.0
Merged-chr2-58923291-4	chr2	58922786	58923786	+	979.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 10 of 13)	RMER19C|LTR|ERVK	168102.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95688618-4	chr11	95688109	95689109	+	979.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21652.0	NM_008831	18673.0	Mm.263862	NM_008831	ENSMUSG00000038845	Phb	Bap32	prohibitin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62407959-4	chr4	62407450	62408450	+	979.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027297)	promoter-TSS (NM_027297)	673.0	NM_139291	66440.0	Mm.109930	NM_139291	ENSMUSG00000066149	Cdc26	2010012C09Rik	cell division cycle 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-8766386-4	chr16	8765903	8766903	+	979.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28061.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-115850160-4	chr4	115849659	115850659	+	979.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355174, intron 2 of 11)	intron (NM_001355174, intron 2 of 11)	10961.0	NM_001355174	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111033984-4	chr9	111033494	111034494	+	979.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008522, intron 13 of 16)	RSINE1|SINE|B4	14702.0	NM_008522	17002.0	Mm.282359	NM_008522	ENSMUSG00000032496	Ltf	Csp82|Lf|MMS10R|Ms10r	lactotransferrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63614313-4	chr9	63613818	63614818	+	979.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	11672.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141623948-4	chr4	141623431	141624431	+	979.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013780)	promoter-TSS (NM_001013780)	-97.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	2.0	25.5	3.5	2.5	14.5	2.5
Merged-chr8-107294408-4	chr8	107293899	107294899	+	979.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286260, intron 1 of 12)	CpG	929.0	NM_133957	54446.0	Mm.390057	NM_018823	ENSMUSG00000003847	Nfat5	AI225870|B130038B15Rik|CAG-8|CAG80|NFATL1|OREBP|TonEBP|mKIAA0827|nfatz	nuclear factor of activated T cells 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-55784729-4	chr7	55784235	55785235	+	979.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-9390.0	NM_001360874	233276.0	Mm.284306	NM_146190	ENSMUSG00000033790	Tubgcp5	B130010C12Rik|GCP5|mKIAA1899	tubulin, gamma complex associated protein 5	protein-coding	1.5	0.0	1.0	1.0	5.0	1.5
Merged-chr9-113026818-4	chr9	113026304	113027304	+	979.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	560348.0	NR_040760	102688.0	Mm.394901	NR_040760	ENSMUSG00000109890	AU023762	-	expressed sequence AU023762	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-194672028-4	chr1	194671540	194672540	+	979.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008882, intron 3 of 31)	intron (NM_008882, intron 3 of 31)	52211.0	NM_008882	18845.0	Mm.2251	NM_008882	ENSMUSG00000026640	Plxna2	2810428A13Rik|AA589422|AW457381|OCT|PlexA2|Plxn2|mKIAA0463	plexin A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112679256-3	chr12	112678821	112679821	+	979.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001100460, intron 1 of 1)	CpG	481.0	NM_001100460	382639.0	Mm.11350	NM_001100460	ENSMUSG00000037638	Zbtb42	EG382639|Gm5188|simiRP58	zinc finger and BTB domain containing 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13889730-3	chr8	13889274	13890274	+	979.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359059, intron 1 of 2)	intron (NM_001359059, intron 1 of 2)	497.0	NM_001359059	66423.0	Mm.29063	NM_025556	ENSMUSG00000031458	Coprs	1700029I03Rik|2410022L05Rik|AA409325|AI256813|C85432|Copr5	coordinator of PRMT5, differentiation stimulator	protein-coding	4.5	32.0	10.5	4.5	34.0	10.5
Merged-chr7-74497401-4	chr7	74496884	74497884	+	979.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038643, intron 2 of 10)	ORR1E|LTR|ERVL-MaLR	57396.0	NM_023908	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88794904-3	chr10	88794405	88795405	+	979.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175158, intron 22 of 61)	intron (NM_175158, intron 22 of 61)	31909.0	NM_175158	70683.0	Mm.29631	NM_175158	ENSMUSG00000004356	Utp20	3830408P06Rik|AA617408|Drim|mDRIM|mDRIN	UTP20 small subunit processome component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-140768378-4	chr6	140767895	140768895	+	979.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	141510.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111990118-4	chr8	111989630	111990630	+	979.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357185, intron 2 of 8)	intron (NM_001357185, intron 2 of 8)	2172.0	NM_001357184	30947.0	Mm.282162	NM_013925	ENSMUSG00000031949	Adat1	MMADAT1	adenosine deaminase, tRNA-specific 1	protein-coding	0.0	0.0	2.0	0.0	11.5	2.0
Merged-chr10-117313330-4	chr10	117312823	117313823	+	979.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20455.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14055794-3	chr2	14055292	14056292	+	979.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013935, exon 1 of 7)	exon (NM_013935, exon 1 of 7)	243.0	NM_001012396	30963.0	Mm.241205	NM_013935	ENSMUSG00000063275	Hacd1	Ptpla	3-hydroxyacyl-CoA dehydratase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146288177-4	chr5	146287752	146288752	+	979.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359991, intron 6 of 12)	intron (NM_001359991, intron 6 of 12)	57002.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52634555-4	chr3	52634074	52635074	+	979.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105150.0	NR_038079	329639.0	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24707634-4	chr17	24707149	24708149	+	979.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145396)	promoter-TSS (NM_145396)	4.0	NM_145396	213773.0	Mm.100353	NM_145396	ENSMUSG00000040688	Tbl3	9430070M15Rik	transducin (beta)-like 3	protein-coding	165.0	328.5	262.5	91.5	236.5	139.5
Merged-chr1-33503042-4	chr1	33502561	33503561	+	979.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008922, intron 10 of 13)	intron (NM_008922, intron 10 of 13)	166733.0	NM_008922	19076.0	Mm.27705	NM_008922	ENSMUSG00000026134	Prim2	AI323589	DNA primase, p58 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155472894-4	chr2	155472397	155473397	+	979.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32114.0	NM_019825	56406.0	Mm.27592	NM_019825	ENSMUSG00000038369	Ncoa6	AIB3|ASC-2|ASC2|NRC|Ncoa7|PRIP|RAP250|mKIAA0181	nuclear receptor coactivator 6	protein-coding	30.0	67.0	47.0	21.0	63.0	61.0
Merged-chr6-31075879-4	chr6	31075383	31076383	+	979.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12790.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50109034-3	chr15	50108472	50109472	+	979.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	780077.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	1.5	2.5	3.0	1.0	2.0	2.5
Merged-chr16-38729804-4	chr16	38729315	38730315	+	979.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12444.0	NR_152434	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-84180218-4	chr11	84179734	84180734	+	979.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12758.0	NM_001037932	628813.0	Mm.390389	NM_001037932	ENSMUSG00000051452	Gm11437	AI463690	predicted gene 11437	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-144005836-4	chr1	144005315	144006315	+	979.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1666.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153163706-4	chr2	153163217	153164217	+	979.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	intron (NM_133847, intron 1 of 17)	2416.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-45651685-4	chr16	45651185	45652185	+	979.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145389, intron 1 of 5)	MTD|LTR|ERVL-MaLR	2433.0	NM_145389	212998.0	Mm.97511	NM_145389	ENSMUSG00000033187	BC016579	-	cDNA sequence, BC016579	protein-coding	6.0	10.0	26.0	7.0	5.0	0.0
Merged-chr10-122535334-4	chr10	122534833	122535833	+	979.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34558.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	2.0	4.0	3.5	1.0	0.0	6.5
Merged-chr13-37338037-4	chr13	37337506	37338506	+	979.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7339.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73645311-4	chr15	73644775	73645775	+	979.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-20531.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152790353-4	chr1	152789861	152790861	+	979.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-9792.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-149343953-4	chr6	149343431	149344431	+	979.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34517.0	NM_001289662	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33382558-2	chr16	33382058	33383058	+	979.2000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358570, intron 1 of 8)	intron (NM_001358570, intron 1 of 8)	1256.0	NM_001358570	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-102899452-4	chr13	102898962	102899962	+	979.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	139207.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29151747-4	chr11	29151265	29152265	+	979.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027869, intron 18 of 27)	ORR1D2|LTR|ERVL-MaLR	21014.0	NM_027869	71701.0	Mm.211131	NM_027869	ENSMUSG00000020464	Pnpt1	1200003F12Rik|Old35|PNPase|Pnptl1	polyribonucleotide nucleotidyltransferase 1	protein-coding	23.5	43.5	15.5	41.5	51.5	23.0
Merged-chr6-125071284-4	chr6	125070848	125071848	+	979.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163268)	promoter-TSS (NM_001163268)	71.0	NM_001163268	381810.0	Mm.333386	NM_001163268	ENSMUSG00000067714	Lpar5	GPR93|Gm1072|Gpr92|LPA5	lysophosphatidic acid receptor 5	protein-coding	3.5	28.0	25.0	16.5	27.5	22.5
Merged-chr2-24367141-4	chr2	24366645	24367645	+	979.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355231)	promoter-TSS (NM_001355231)	-530.0	NM_001355231	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-43841242-4	chr10	43840730	43841730	+	979.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B1|LTR|ERVK	15323.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-121272685-4	chr6	121272185	121273185	+	979.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26779.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	0.0	9.0	6.0	0.0	5.5	9.5
Merged-chr4-55631331-4	chr4	55630808	55631808	+	979.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-98833.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	17.5	51.0	39.5	23.0	42.0	26.5
Merged-chr2-167377319-2	chr2	167376819	167377819	+	979.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28141.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81138978-2	chr10	81138478	81139478	+	979.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010731, intron 1 of 2)	intron (NM_010731, intron 1 of 2)	2707.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8864665-4	chr12	8864166	8865166	+	979.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56641.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-176801097-4	chr1	176800584	176801584	+	979.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099637, intron 1 of 19)	intron (NM_001099637, intron 1 of 19)	6040.0	NM_001099637	545389.0	Mm.269991	NM_001024722	ENSMUSG00000057335	Cep170	4933426L22Rik|A330004A13Rik|AI195353	centrosomal protein 170	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84957878-4	chr1	84957369	84958369	+	979.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-22786.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73054061-4	chr12	73053586	73054586	+	979.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7374.0	NM_009189	20471.0	Mm.4645	NM_009189	ENSMUSG00000051367	Six1	BB138287	sine oculis-related homeobox 1	protein-coding	0.0	1.5	0.0	0.0	2.5	1.0
Merged-chr2-36232210-4	chr2	36231714	36232714	+	979.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 2 of 10)	intron (NM_008969, intron 2 of 10)	1788.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100613829-4	chr15	100613376	100614376	+	979.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045701)	TTS (NR_045701)	1234.0	NR_045701	78445.0	Mm.44383	NR_045701	ENSMUSG00000097093	C330013E15Rik	-	RIKEN cDNA C330013E15 gene	ncRNA	78.5	131.0	42.5	44.5	106.5	86.5
Merged-chr5-121835544-4	chr5	121835005	121836005	+	979.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001306127, intron 1 of 8)	intron (NM_001306127, intron 1 of 8)	599.0	NM_001306126	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97361694-4	chr7	97361254	97362254	+	979.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-9863.0	NM_199035	381903.0	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	0.0	0.0	3.5	2.0	0.0	0.0
Merged-chr4-86902624-4	chr4	86902112	86903112	+	979.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290543, intron 4 of 5)	intron (NM_001290543, intron 4 of 5)	28198.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	3.0	0.0	1.0	2.5	8.0	2.0
Merged-chr11-101582256-4	chr11	101581764	101582764	+	979.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144830)	promoter-TSS (NM_144830)	22.0	NM_144830	217203.0	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-73176583-4	chr11	73176127	73177127	+	979.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029564)	promoter-TSS (NM_029564)	381.0	NM_001168470	66048.0	Mm.73608	NM_025318	ENSMUSG00000047260	Emc6	0610009E20Rik|0610025L18Rik|Tmem93	ER membrane protein complex subunit 6	protein-coding	7.5	8.5	10.5	9.0	18.5	10.5
Merged-chr11-85310793-4	chr11	85310297	85311297	+	979.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016910)	promoter-TSS (NM_016910)	-457.0	NM_016910	53892.0	Mm.45609	NM_016910	ENSMUSG00000020525	Ppm1d	AV338790|Wip1	protein phosphatase 1D magnesium-dependent, delta isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67431016-4	chr17	67430528	67431528	+	979.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76537.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140418787-4	chr5	140418276	140419276	+	979.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133916)	promoter-TSS (NM_133916)	-529.0	NM_133916	27979.0	Mm.21671	NM_133916	ENSMUSG00000056076	Eif3b	AL033316|AL033334|AL033369|AW208965|D5Wsu45e|EIF3-ETA|EIF3-P110|EIF3-P116|Eif3s9|PRT1	eukaryotic translation initiation factor 3, subunit B	protein-coding	50.5	53.0	100.0	18.5	68.0	91.5
Merged-chr13-85508001-4	chr13	85507514	85508514	+	979.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-218528.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	17.0	17.0	22.5	3.0	45.0	13.5
Merged-chr5-143048392-4	chr5	143047887	143048887	+	979.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	64633.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105564939-4	chr8	105564390	105565390	+	979.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013477, intron 1 of 7)	B2_Mm1t|SINE|B2	1174.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-59670245-4	chr1	59669730	59670730	+	979.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009460, intron 1 of 4)	intron (NM_009460, intron 1 of 4)	604.0	NM_009460	22218.0	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94578157-4	chr10	94577630	94578630	+	979.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177026, intron 1 of 3)	intron (NM_177026, intron 1 of 3)	1867.0	NM_177026	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3780559-4	chr4	3780044	3781044	+	979.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	B3A|SINE|B2	55111.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	1.0	15.0	6.0	11.0	2.0	6.0
Merged-chr2-32353339-4	chr2	32352843	32353843	+	979.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_125959)	promoter-TSS (NR_125959)	-14.0	NM_010065	13429.0	Mm.44736	NM_010065	ENSMUSG00000026825	Dnm1	AI838169|Dnm|Ftfl|mKIAA4093	dynamin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47708214-7	chr9	47707715	47708715	+	979.0238039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	109993.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	35.0	69.5	44.5	44.5	66.0	50.0
Merged-chr4-129785383-4	chr4	129784865	129785865	+	979.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35114.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0.5	15.0	2.5	7.0	28.5	17.5
Merged-chr7-55852575-4	chr7	55852083	55853083	+	979.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 1 of 30)	MTD|LTR|ERVL-MaLR	10512.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37540585-2	chr1	37540085	37541085	+	979.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 1 of 15)	CpG	431.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114259511-2	chr6	114259011	114260011	+	979.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23124.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78606694-2	chr15	78606194	78607194	+	979.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028195, intron 4 of 12)	intron (NM_028195, intron 4 of 12)	9647.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	5.5	23.5	18.0	3.0	13.0	13.0
Merged-chr17-70971173-1	chr17	70970673	70971673	+	979.0	f1_c57bl6.idr	Intergenic	MER34|LTR|ERV1	19343.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	16.5	12.5	26.5	11.0	12.0	8.0
Merged-chr2-10142859-1	chr2	10142359	10143359	+	979.0	f0_balb.idr	Intergenic	Intergenic	-10684.0	NM_172471	209378.0	Mm.313876	NM_172471	ENSMUSG00000025780	Itih5	4631408O11Rik|5430408M01Rik|E130106B02	inter-alpha (globulin) inhibitor H5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65686331-2	chr18	65685831	65686831	+	979.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361052, intron 8 of 8)	intron (NM_001361052, intron 8 of 8)	-11937.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	5.5	3.0	7.0	12.0	58.0	34.0
Merged-chr3-126663589-4	chr3	126663061	126664061	+	979.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	66610.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	91.5	133.5	92.5	52.0	116.5	86.0
Merged-chr13-99197128-2	chr13	99196628	99197628	+	979.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	12305.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91405242-2	chr16	91404742	91405742	+	979.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008349)	promoter-TSS (NM_008349)	-993.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100588694-2	chr11	100588194	100589194	+	979.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019795, intron 9 of 13)	PB1D10|SINE|Alu	12803.0	NM_001146318	12799.0	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-153958063-4	chr4	153957566	153958566	+	979.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163019, intron 1 of 2)	intron (NM_001163019, intron 1 of 2)	829.0	NM_001163019	97159.0	Mm.7066	NM_175287	ENSMUSG00000047613	A430005L14Rik	C79672	RIKEN cDNA A430005L14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-30507736-2	chr18	30507236	30508236	+	979.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	234871.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	9.5	21.0	31.0	4.5	32.0	23.5
Merged-chr1-131671307-4	chr1	131670795	131671795	+	979.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007799, intron 7 of 9)	intron (NM_007799, intron 7 of 9)	-17400.0	NM_001311096	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	0.0	6.5	23.0	0.0	9.5	13.5
Merged-chr1-170885465-4	chr1	170884950	170885950	+	979.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356485)	promoter-TSS (NM_001356485)	90.0	NR_151476	80915.0	Mm.34365	NM_023173	ENSMUSG00000026659	Dusp12	1190004O14Rik|AA027408|AW049275|ESTM36|LMW-DSP4|T-DSP4|VH1|mVH1	dual specificity phosphatase 12	protein-coding	2.0	0.0	0.5	2.0	0.0	0.5
Merged-chr7-43626150-2	chr7	43625650	43626650	+	979.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8589.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-13356603-2	chr14	13356103	13357103	+	979.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028052, intron 2 of 5)	intron (NM_028052, intron 2 of 5)	71823.0	NM_028052	72003.0	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70761223-4	chr9	70760724	70761724	+	979.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007399, intron 9 of 15)	intron (NM_007399, intron 9 of 15)	82242.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-95669295-2	chr1	95668795	95669795	+	979.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1701.0	NM_001159745	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83602862-2	chr8	83602362	83603362	+	979.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5313.0	NM_018808	81489.0	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	0.0	0.0	3.5	6.0	6.5	10.5
Merged-chr8-111562620-4	chr8	111562125	111563125	+	979.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168623, intron 1 of 4)	intron (NM_001168623, intron 1 of 4)	24282.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	28.0	93.0	53.0	47.5	100.0	59.5
Merged-chr6-30454088-2	chr6	30453588	30454588	+	979.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001311087, exon 9 of 9)	3' UTR (NM_001311087, exon 9 of 9)	-6897.0	NR_131049	69337.0	Mm.396168	NR_131049	ENSMUSG00000085470	1700012C14Rik	-	RIKEN cDNA 1700012C14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70473417-2	chr11	70472917	70473917	+	979.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13433.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97737830-3	chr3	97737336	97738336	+	979.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 24 of 46)	intron (NM_001039376, intron 24 of 46)	30178.0	NM_178080	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118164745-2	chr11	118164245	118165245	+	979.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001112699, exon 13 of 13)	3' UTR (NM_001112699, exon 13 of 13)	-35526.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72515213-2	chr6	72514713	72515713	+	979.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29178.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77491280-4	chr11	77490816	77491816	+	979.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1638.0	NM_172945	268445.0	Mm.39296	NM_172945	ENSMUSG00000037907	Ankrd13b	AW124583|B930093C12Rik	ankyrin repeat domain 13b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-56831256-3	chr4	56830761	56831761	+	979.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018761, intron 8 of 18)	intron (NM_018761, intron 8 of 18)	-28930.0	NM_026079	230233.0	Mm.282743	NM_026079	ENSMUSG00000028431	Ikbkap	3110040G09Rik|6030413P05|C78473|Elp1|IKAP	inhibitor of kappa light polypeptide enhancer in B cells, kinase complex-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51100852-7	chr13	51100333	51101333	+	979.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029463)	promoter-TSS (NR_029463)	-47.0	NM_001283028	20729.0	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89338401-2	chr6	89337901	89338901	+	979.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008881, intron 9 of 31)	intron (NM_008881, intron 9 of 31)	24212.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44407916-4	chr19	44407416	44408416	+	979.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009127)	promoter-TSS (NM_009127)	-207.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-74724839-3	chr7	74724341	74725341	+	979.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-170061.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	2.5	6.5	6.5	14.5	42.5	6.5
Merged-chr8-46868419-4	chr8	46867919	46868919	+	978.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-118468.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120955841-4	chr4	120955340	120956340	+	978.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4139.0	NM_001005788	381549.0	Mm.331840	NM_001005788	ENSMUSG00000064141	Zfp69	Gm1029|Krab2|Zfp63	zinc finger protein 69	protein-coding	2.5	0.0	0.5	0.0	1.5	2.5
Merged-chr5-43848485-4	chr5	43848010	43849010	+	978.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20299.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	17.0	33.5	19.5	26.0	49.5	27.0
Merged-chr2-38944938-3	chr2	38944436	38945436	+	978.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172854, intron 2 of 7)	intron (NM_172854, intron 2 of 7)	12956.0	NM_172854	241327.0	Mm.103491	NM_172854	ENSMUSG00000046618	Olfml2a	4932431K08Rik|mFLJ00237	olfactomedin-like 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-26587756-4	chr11	26587260	26588260	+	978.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027260, intron 2 of 12)	intron (NM_027260, intron 2 of 12)	6160.0	NM_027260	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	31.0	45.5	63.5	21.0	31.0	46.0
Merged-chr14-20372052-4	chr14	20371552	20372552	+	978.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024512, intron 7 of 13)	MTD|LTR|ERVL-MaLR	16858.0	NM_134081	108671.0	Mm.2871	NM_134081	ENSMUSG00000021811	Dnajc9	5330419I01Rik|AU020082	DnaJ heat shock protein family (Hsp40) member C9	protein-coding	3.0	0.0	2.5	0.0	1.0	2.5
Merged-chr16-45757627-4	chr16	45757129	45758129	+	978.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357078, intron 13 of 16)	intron (NM_001357078, intron 13 of 16)	-14674.0	NM_172511	213012.0	Mm.247453	NM_172511	ENSMUSG00000033157	Abhd10	-	abhydrolase domain containing 10	protein-coding	10.5	12.0	28.0	16.5	8.0	8.0
Merged-chr10-78148142-4	chr10	78147623	78148623	+	978.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	21645.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61143505-4	chr10	61143030	61144030	+	978.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009163, intron 2 of 14)	intron (NM_009163, intron 2 of 14)	4154.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67514248-4	chr15	67513747	67514747	+	978.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	287478.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93095987-4	chr10	93095490	93096490	+	978.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-14394.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	33.5	23.5	35.5	7.5	10.0	40.5
Merged-chr12-35042083-4	chr12	35041568	35042568	+	978.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5121.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	35.5	75.5	75.5	45.0	100.0	77.5
Merged-chr8-120742721-4	chr8	120742210	120743210	+	978.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301811, intron 2 of 8)	intron (NM_001301811, intron 2 of 8)	4071.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111134806-3	chr10	111134304	111135304	+	978.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-29998.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58712415-4	chr16	58711926	58712926	+	978.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6298.0	NM_001162955	71223.0	Mm.359970	NM_001162955	ENSMUSG00000047293	Gpr15	4933439K08Rik	G protein-coupled receptor 15	protein-coding	35.0	121.0	71.0	39.0	91.5	47.0
Merged-chr8-70131325-4	chr8	70130841	70131841	+	978.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104434)	promoter-TSS (NR_104434)	14.0	NM_001025587	75692.0	Mm.161167	NM_001025586	ENSMUSG00000071078	Nr2c2ap	2310073E15Rik	nuclear receptor 2C2-associated protein	protein-coding	61.5	160.0	96.0	39.5	95.0	64.5
Merged-chr9-89259122-4	chr9	89258619	89259619	+	978.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEg|LINE|L1	47735.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	22.5	12.0	23.0	21.0	12.0	22.5
Merged-chr17-34304450-4	chr17	34303952	34304952	+	978.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1415.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	96.0	309.5	156.5	143.5	324.0	166.0
Merged-chr13-34082742-4	chr13	34082269	34083269	+	978.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-4761.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	9.0	0.5	4.5	2.5	13.0	14.0
Merged-chr13-34089258-4	chr13	34088816	34089816	+	978.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046184, intron 3 of 4)	intron (NR_046184, intron 3 of 4)	-11308.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	27.0	76.5	51.5	19.0	62.0	49.5
Merged-chr8-70560300-4	chr8	70559787	70560787	+	978.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	20612.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	10.0	14.0	9.5	17.5	19.0	10.5
Merged-chr8-26979204-4	chr8	26978716	26979716	+	978.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001101502, exon 2 of 2)	exon (NM_001101502, exon 2 of 2)	1880.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-24620588-4	chr4	24620099	24621099	+	978.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355618, intron 9 of 9)	intron (NM_001355618, intron 9 of 9)	124148.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-59206785-4	chr3	59206208	59207208	+	978.857178	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	4174.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-33492512-4	chr8	33492024	33493024	+	978.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8213.0	NR_033589	628431.0	Mm.376526	NR_033589		Hmgb1-rs17	Hmg1-rs17	high mobility group box 1, related sequence 17	pseudo	17.0	15.0	18.0	0.0	8.5	4.0
Merged-chr17-50510656-6	chr17	50510236	50511236	+	978.8412480000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	1189.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	31.5	32.5	34.0	26.5	38.5	36.0
Merged-chr18-56708347-4	chr18	56707832	56708832	+	978.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010721, exon 1 of 11)	exon (NM_010721, exon 1 of 11)	519.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109799474-4	chr8	109798964	109799964	+	978.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301211, intron 1 of 22)	intron (NM_001301211, intron 1 of 22)	20881.0	NM_001301211	11765.0	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80775450-4	chr7	80774988	80775988	+	978.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	B3|SINE|B2	27843.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	174.0	349.0	314.0	201.0	407.0	320.0
Merged-chr14-54863631-4	chr14	54863147	54864147	+	978.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177705, intron 1 of 1)	intron (NM_001177705, intron 1 of 1)	511.0	NM_001177705	239099.0	Mm.280994	NM_183174	ENSMUSG00000057156	Homez	mKIAA1443	homeodomain leucine zipper-encoding gene	protein-coding	46.0	100.0	49.0	22.5	101.0	61.0
Merged-chr12-77288703-4	chr12	77288221	77289221	+	978.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252614, intron 3 of 12)	intron (NM_001252614, intron 3 of 12)	49982.0	NR_045554	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128418232-4	chr7	128417753	128418753	+	978.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026418)	promoter-TSS (NM_026418)	-81.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70974328-4	chr17	70973836	70974836	+	978.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023402, exon 4 of 4)	exon (NM_023402, exon 4 of 4)	16180.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25740132-3	chr7	25739664	25740664	+	978.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178089, intron 7 of 7)	MIR|SINE|MIR	14595.0	NM_144922	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-19901288-4	chr4	19900789	19901789	+	978.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175406, intron 2 of 7)	intron (NM_175406, intron 2 of 7)	21277.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168539246-4	chr2	168538760	168539760	+	978.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037177, intron 3 of 6)	MER3|DNA|hAT-Charlie	51105.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70541139-3	chr14	70540638	70541638	+	978.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4113.0	NM_180588	72549.0	Mm.46742	NM_180588	ENSMUSG00000033589	Reep4	2700029E10Rik	receptor accessory protein 4	protein-coding	10.0	7.0	5.5	16.0	3.0	8.0
Merged-chr4-141562451-4	chr4	141561946	141562946	+	978.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16284.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	12.0	12.5	14.5	0.5	4.5	15.0
Merged-chr13-32802639-4	chr13	32802094	32803094	+	978.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030215, exon 1 of 7)	exon (NM_030215, exon 1 of 7)	564.0	NM_030215	78903.0	Mm.286680	NM_030215	ENSMUSG00000021400	Wrnip1	4833444L21Rik|WHIP|Wrnip	Werner helicase interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45095311-3	chr9	45094813	45095813	+	978.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005421, intron 6 of 10)	intron (NM_001005421, intron 6 of 10)	16130.0	NM_001005421	270152.0	Mm.190461	NM_001005421	ENSMUSG00000048534	Jaml	AMICA|Amica1|Crea7|Gm638	junction adhesion molecule like	protein-coding	0.0	0.5	1.5	0.0	17.5	22.5
Merged-chr4-121197183-4	chr4	121196678	121197678	+	978.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346660, intron 1 of 7)	intron (NM_001346660, intron 1 of 7)	17906.0	NM_001346660	109263.0	Mm.215745	NM_001081013	ENSMUSG00000049878	Rlf	9230110M18Rik|AI195322|MommeD8	rearranged L-myc fusion sequence	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-77041748-4	chr16	77041249	77042249	+	978.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 3 of 23)	intron (NM_013918, intron 3 of 23)	27680.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-105294298-4	chr13	105293713	105294713	+	978.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360891, intron 1 of 7)	CpG	272.0	NM_001360890	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71866064-4	chr2	71865569	71866569	+	978.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 3 of 3).2	(T)n|Simple_repeat|Simple_repeat	-7155.0	NM_172665	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	32.0	32.0	19.5	10.0	16.5	19.5
Merged-chr9-107985282-4	chr9	107984764	107985764	+	978.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026597, intron 1 of 1)	intron (NM_026597, intron 1 of 1)	652.0	NM_026597	68176.0	Mm.76166	NM_026597	ENSMUSG00000042106	Fam212a	6230427J02Rik|Inka1	family with sequence similarity 212, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34762342-4	chr5	34761857	34762857	+	978.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010414, intron 1 of 66)	intron (NM_010414, intron 1 of 66)	617.0	NM_010414	15194.0	Mm.209071	NM_010414	ENSMUSG00000029104	Htt	AI256365|C430023I11Rik|Hd|Hdh|IT15	huntingtin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-104523670-4	chr14	104523179	104524179	+	978.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1013.0	NM_026047	72486.0	Mm.291811	NM_026047	ENSMUSG00000022120	Rnf219	2610206B13Rik|2810449K13Rik|AI451544	ring finger protein 219	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120038809-4	chr1	120038304	120039304	+	978.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012322, intron 5 of 13)	intron (NM_001012322, intron 5 of 13)	31824.0	NM_001012322	319229.0	Mm.189223	NM_001012322	ENSMUSG00000026387	Sctr	6530402O03Rik	secretin receptor	protein-coding	8.5	13.0	26.5	3.0	23.0	5.0
Merged-chr18-39416597-3	chr18	39416089	39417089	+	978.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008173, intron 6 of 7)	intron (NM_008173, intron 6 of 7)	70656.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	3.0	10.0	11.5	11.0	12.0	3.0
Merged-chr8-125829067-3	chr8	125828581	125829581	+	978.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175561, intron 17 of 33)	MTD|LTR|ERVL-MaLR	-68833.0	NR_155422	102632990.0	Mm.429446	NR_155422		A730098A19Rik	-	RIKEN cDNA A730098A19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129914374-3	chr2	129913881	129914881	+	978.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97959.0	NM_009374	21818.0	Mm.2961	NM_009374	ENSMUSG00000027401	Tgm3	AI893889|TG E|TG(E)|TGE|TGase E|TGase-3|we	transglutaminase 3, E polypeptide	protein-coding	0.5	16.0	10.0	63.0	187.5	156.0
Merged-chr11-118232284-4	chr11	118231811	118232811	+	978.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	16281.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29925747-4	chr6	29925259	29926259	+	978.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037740, intron 4 of 20)	intron (NM_001037740, intron 4 of 20)	8746.0	NM_001037740	320609.0	Mm.56097	NM_177204	ENSMUSG00000039629	Strip2	D330017J20Rik|Fam40b	striatin interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-115101890-4	chr13	115101334	115102334	+	978.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033228, exon 1 of 29)	5' UTR (NM_001033228, exon 1 of 29)	130.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-37083527-4	chr17	37083022	37084022	+	978.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2714.0	NM_146477	258469.0	Mm.271392	NM_146477	ENSMUSG00000056600	Olfr90	MOR256-21|bM573K1.2	olfactory receptor 90	protein-coding	12.0	5.5	5.5	6.0	7.0	5.5
Merged-chr12-111436676-7	chr12	111436152	111437152	+	978.7261960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6009.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104375435-4	chr8	104374933	104375933	+	978.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153582, intron 1 of 3)	intron (NM_153582, intron 1 of 3)	20374.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-115148741-4	chr13	115148235	115149235	+	978.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46771.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128850113-4	chr6	128849624	128850624	+	978.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001254946, exon 3 of 3)	exon (NM_001254946, exon 3 of 3)	-23809.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-92881443-4	chr8	92880924	92881924	+	978.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357375, intron 7 of 12)	intron (NM_001357375, intron 7 of 12)	-19971.0	NM_027112	69543.0	Mm.440514	NM_027112	ENSMUSG00000078144	Capns2	2310005G05Rik|30K-2	calpain, small subunit 2	protein-coding	6.5	29.5	10.5	7.5	1.0	2.5
Merged-chr10-98608633-4	chr10	98608133	98609133	+	978.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-256766.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46820082-4	chr11	46819591	46820591	+	978.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178759, intron 5 of 8)	intron (NM_178759, intron 5 of 8)	9292.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	30.5	75.0	67.5	43.0	46.5	60.0
Merged-chr4-85591246-4	chr4	85590747	85591747	+	978.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	385791.0	NM_019535	20404.0	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding	7.5	5.5	10.0	0.0	8.0	0.0
Merged-chr7-38071229-3	chr7	38070726	38071726	+	978.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36264.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	0.0	3.5	5.5	13.5	43.5	21.5
Merged-chr19-44332456-4	chr19	44331940	44332940	+	978.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183216)	promoter-TSS (NM_183216)	-886.0	NM_183216	329065.0	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-97534560-3	chr9	97534076	97535076	+	978.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022319, intron 6 of 17)	intron (NM_022319, intron 6 of 17)	-164618.0	NM_030219	78911.0	Mm.108347	NM_030219	ENSMUSG00000032451	Trim42	4930486B16Rik	tripartite motif-containing 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-90057859-4	chr13	90057321	90058321	+	978.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028012, intron 3 of 7)	Charlie24|DNA|hAT-Charlie	31787.0	NM_028012	108138.0	Mm.37531	NM_028012	ENSMUSG00000021615	Xrcc4	2310057B22Rik|AW413319|AW545101	X-ray repair complementing defective repair in Chinese hamster cells 4	protein-coding	27.5	36.5	29.0	23.0	35.5	36.5
Merged-chr18-42510169-3	chr18	42509671	42510671	+	978.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-1316.0	NM_001039474	56070.0	Mm.270511	NM_001039474	ENSMUSG00000024498	Tcerg1	2410022J09Rik|2900090C16Rik|AI428505|CA150b|FBP23|FBP28|Taf2s|ca150|p144	transcription elongation regulator 1 (CA150)	protein-coding	12.0	6.5	10.0	1.0	28.5	11.5
Merged-chr16-35803817-3	chr16	35803266	35804266	+	978.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152314, intron 3 of 8)	intron (NR_152314, intron 3 of 8)	33380.0	NM_175111	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	0.0	2.0	1.0	0.0	3.5	2.5
Merged-chr7-112240941-1	chr7	112240441	112241441	+	978.6666869999999	f0_balb.idr	intron (NM_001193305, intron 2 of 25)	intron (NM_001193305, intron 2 of 25)	15105.0	NM_001193305	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	0.0	3.5	0.0	12.0	0.0	4.0
Merged-chr2-143867484-4	chr2	143867080	143868080	+	978.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4407.0	NM_001291061	12075.0	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31170084-3	chr6	31169570	31170570	+	978.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	48404.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75487767-2	chr11	75487267	75488267	+	978.6666869999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_138659, exon 2 of 42)	exon (NM_138659, exon 2 of 42)	990.0	NM_138659	192159.0	Mm.3757	NM_138659	ENSMUSG00000020850	Prpf8	AU019467|D11Bwg0410e|DBF3/PRP8|Prp8|Sfprp8l	pre-mRNA processing factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99566979-2	chr12	99566479	99567479	+	978.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_136760, intron 2 of 3)	intron (NR_136760, intron 2 of 3)	3138.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22859130-4	chr11	22858697	22859697	+	978.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001169114, intron 1 of 1)	CpG	538.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-53893237-4	chr10	53892734	53893734	+	978.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-142325.0	NM_001081428	75906.0	Mm.436785	NM_001081428	ENSMUSG00000019856	Fam184a	3110012E06Rik|4930438C08Rik|4930589M24Rik	family with sequence similarity 184, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151312681-4	chr1	151312194	151313194	+	978.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31792.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125569075-4	chr8	125568549	125569549	+	978.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	814.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	90.5	270.0	161.5	76.5	184.0	98.5
Merged-chr6-28864804-4	chr6	28864342	28865342	+	978.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 16 of 23)	intron (NM_019776, intron 16 of 23)	-33095.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110974936-3	chr12	110974441	110975441	+	978.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3677.0	NM_001361917	74251.0	Mm.250989	NM_175207	ENSMUSG00000037904	Ankrd9	2500003O20Rik	ankyrin repeat domain 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99982449-3	chr7	99981949	99982949	+	978.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1991.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46589335-3	chr19	46588833	46589833	+	978.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053196, intron 6 of 11)	intron (NM_053196, intron 6 of 11)	-9773.0	NM_001177812	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	12.0	34.5	55.5	8.5	0.0	9.0
Merged-chr10-111673039-9	chr10	111672563	111673563	+	978.607422	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78790.0	NR_045344	71321.0	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-100224386-4	chr14	100223885	100224885	+	978.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74589.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	1.0	4.0	4.0	2.5	12.0	10.5
Merged-chr15-78247853-4	chr15	78247343	78248343	+	978.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008677, intron 1 of 9)	intron (NM_008677, intron 1 of 9)	3032.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	56.0	132.0	58.5	66.0	179.5	118.5
Merged-chr9-58249760-4	chr9	58249204	58250204	+	978.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311088)	promoter-TSS (NM_001311088)	82.0	NM_008884	18854.0	Mm.392123	NM_008884	ENSMUSG00000036986	Pml	1200009E24Rik|AI661194|Trim19	promyelocytic leukemia	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19472601-4	chr7	19472091	19473091	+	978.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14097.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	2.5	11.0	10.0	6.5	10.5	7.5
Merged-chr6-97398563-4	chr6	97398070	97399070	+	978.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	60716.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56734170-4	chr19	56733647	56734647	+	978.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11775.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72551410-4	chr5	72550907	72551907	+	978.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153351, intron 4 of 21)	intron (NR_153351, intron 4 of 21)	8238.0	NM_001359837	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125385816-4	chr6	125385321	125386321	+	978.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3b|LINE|CR1	-5317.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	23.0	13.5	19.5	2.5	8.0	2.5
Merged-chr15-76904254-7	chr15	76903776	76904776	+	978.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012053, intron 1 of 5)	CpG	205.0	NM_012053	26961.0	Mm.30066	NM_012053	ENSMUSG00000003970	Rpl8	-	ribosomal protein L8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117447266-2	chr8	117446766	117447766	+	978.5625	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 12 of 20)	intron (NM_028941, intron 12 of 20)	-5757.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-54054392-4	chr10	54053910	54054910	+	978.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 2 of 12)	MTD|LTR|ERVL-MaLR	21386.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12039412-4	chr17	12038898	12039898	+	978.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016694, intron 10 of 11)	intron (NM_016694, intron 10 of 11)	-79886.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	0.0	6.5	2.5	2.0	0.5	2.5
Merged-chr12-99964561-4	chr12	99964069	99965069	+	978.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146037)	promoter-TSS (NM_146037)	70.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102229869-4	chr7	102229359	102230359	+	978.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111937, intron 2 of 5)	intron (NR_111937, intron 2 of 5)	6831.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	6.5	5.0	6.5	4.0	13.0	12.5
Merged-chr2-102974244-4	chr2	102973725	102974725	+	978.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72560.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	4.5	3.0	11.0	1.0	10.5	10.0
Merged-chr13-99030787-4	chr13	99030302	99031302	+	978.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46237.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143050467-4	chr5	143049982	143050982	+	978.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	PB1D11|SINE|Alu	62538.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127299595-4	chr3	127299094	127300094	+	978.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	109464.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	12.0	26.5	28.5	10.5	12.0	15.5
Merged-chr18-74216915-2	chr18	74216415	74217415	+	978.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028868, intron 1 of 14)	intron (NM_028868, intron 1 of 14)	703.0	NM_028868	74322.0	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	1.0	17.0	3.0	7.0	11.0	10.0
Merged-chr19-12431098-2	chr19	12430598	12431598	+	978.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019540, exon 2 of 2)	3' UTR (NM_019540, exon 2 of 2)	3193.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	0.5	0.5	0.0	0.0	0.0	0.5
Merged-chr5-24475141-2	chr5	24474641	24475641	+	978.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359881, intron 1 of 15)	CpG	22964.0	NM_139153	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94571111-9	chr16	94570686	94571686	+	978.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	279.0	NM_001113389	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-119371511-4	chr12	119371019	119372019	+	978.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71891.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145371810-2	chr2	145371310	145372310	+	978.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053195, intron 2 of 16)	intron (NM_053195, intron 2 of 16)	129199.0	NM_053195	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122349104-2	chr2	122348606	122349606	+	978.5	f0_c57.idr|f1_c57bl6.idr	3' UTR (NM_001013829, exon 6 of 6)	3' UTR (NM_001013829, exon 6 of 6)	19812.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	4.0	10.5	1.0	7.0	7.5	4.5
Merged-chr2-167957967-2	chr2	167957467	167958467	+	978.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	25640.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97745413-2	chr7	97744913	97745913	+	978.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7166.0	NM_175105	66333.0	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	0.0	0.0	2.5	0.0	0.0	2.0
Merged-chr12-85466598-2	chr12	85466098	85467098	+	978.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-7292.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139018409-2	chr5	139017909	139018909	+	978.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001253890, exon 11 of 11)	3' UTR (NM_001253890, exon 11 of 11)	-23456.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59540802-2	chr11	59540302	59541302	+	978.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359638)	promoter-TSS (NM_001359638)	-767.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117298383-4	chr8	117297877	117298877	+	978.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	41358.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-100155713-2	chr6	100155213	100156213	+	978.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131645.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-35223208-4	chr4	35222708	35223708	+	978.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081343, intron 1 of 10)	intron (NM_001081343, intron 1 of 10)	2672.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144288292-2	chr2	144287792	144288792	+	978.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17388.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150751326-2	chr2	150750826	150751826	+	978.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355068, intron 1 of 13)	intron (NM_001355068, intron 1 of 13)	2245.0	NM_172117	12497.0	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100962125-2	chr7	100961625	100962625	+	978.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	2241.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	30.5	45.5	47.0	18.5	59.5	40.0
Merged-chr9-20951564-2	chr9	20951064	20952064	+	978.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199432, intron 1 of 38)	intron (NM_001199432, intron 1 of 38)	1059.0	NM_001199433	13433.0	Mm.128580	NM_010066	ENSMUSG00000004099	Dnmt1	Cxxc9|Dnmt|Dnmt1o|MCMT|MTase|Met-1|Met1|MommeD2|m.MmuI	DNA methyltransferase (cytosine-5) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-41639885-4	chr15	41639379	41640379	+	978.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 2 of 17)	intron (NR_152565, intron 2 of 17)	-149116.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9115261-2	chr4	9114761	9115761	+	978.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-154032.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23790070-2	chr17	23789602	23790602	+	978.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-3886.0	NM_001357140	76917.0	Mm.269613	NM_029798	ENSMUSG00000023911	Flywch2	2810417J12Rik|3010014L17Rik|AW548203	FLYWCH family member 2	protein-coding	34.5	19.5	34.0	6.5	9.0	17.0
Merged-chr10-80143751-2	chr10	80143251	80144251	+	978.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347092, intron 1 of 2)	intron (NM_001347092, intron 1 of 2)	1436.0	NM_025313	66043.0	Mm.278560	NM_025313	ENSMUSG00000003072	Atp5d	0610008F14Rik|1500000I11Rik|AA960090|AI876556|AU020773|Atp5f1d|C85518	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-26961773-4	chr11	26961288	26962288	+	978.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	176680.0	NR_002890	654472.0	Mm.347777	NR_002890		Gm12070	-	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	1.0	2.0	0.5	0.0	2.5	0.5
Merged-chr11-51650901-4	chr11	51650396	51651396	+	978.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027958)	promoter-TSS (NR_027958)	-58.0	NR_027958	97775.0	Mm.220299	NM_175289	ENSMUSG00000052563	D930048N14Rik	AI315703|R75254	RIKEN cDNA D930048N14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96734861-2	chr3	96734361	96735361	+	978.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026406, intron 1 of 8)	intron (NM_026406, intron 1 of 8)	7250.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44805425-2	chr13	44804925	44805925	+	978.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205043, intron 1 of 17)	intron (NM_001205043, intron 1 of 17)	74154.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122890555-2	chr8	122890080	122891080	+	978.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037865, exon 10 of 14)	non-coding (NR_037865, exon 10 of 14)	42206.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	9.0	0.0	0.0	0.5	0.0	0.0
Merged-chr6-81443391-4	chr6	81442919	81443919	+	978.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	452244.0	NR_106091	102465711.0		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA	1.0	2.5	7.0	0.0	5.0	0.0
Merged-chr2-22795569-4	chr2	22795076	22796076	+	978.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	RLTR13C1|LTR|ERVK	21249.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-74919332-4	chr14	74918838	74919838	+	978.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	28539.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120055644-4	chr1	120055162	120056162	+	978.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012322, intron 11 of 13)	intron (NM_001012322, intron 11 of 13)	18118.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	10.5	30.0	23.5	2.5	18.5	11.0
Merged-chr5-113649846-4	chr5	113649323	113650323	+	978.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	567.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58512195-4	chr13	58511704	58512704	+	978.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	98673.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0.0	3.0	3.0	1.0	1.0	0.0
Merged-chr12-84130155-4	chr12	84129657	84130657	+	978.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028821, intron 4 of 7)	ORR1G|LTR|ERVL-MaLR	15829.0	NM_001346528	105000.0	Mm.101525	NM_028821	ENSMUSG00000042523	Dnal1	1700010H15Rik|AW121714|Dnalc1|E330027P08Rik	dynein, axonemal, light chain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-101906040-4	chr12	101905531	101906531	+	978.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028446, intron 1 of 20)	intron (NM_028446, intron 1 of 20)	-6636.0	NR_152255	100504056.0	Mm.416837	NR_152255		Gm20036	-	predicted gene, 20036	ncRNA	14.5	22.5	7.0	7.0	6.5	13.0
Merged-chr10-20662527-4	chr10	20662015	20663015	+	978.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 1 of 12)	RLTR28B|LTR|ERVL	62563.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-68888332-4	chr2	68887790	68888790	+	978.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	intron (NM_001347161, intron 1 of 10)	26849.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79158421-4	chr3	79157938	79158938	+	978.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-12563.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	6.0	23.0	6.0	22.5	30.0	13.0
Merged-chr12-79646795-4	chr12	79646304	79647304	+	978.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	277929.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35643941-4	chr8	35643441	35644441	+	978.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-54921.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	62.0	68.0	34.0	19.0	86.5	55.5
Merged-chr16-4679177-4	chr16	4678656	4679656	+	978.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030205, intron 1 of 27)	CpG	564.0	NM_030205	78885.0	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135907624-3	chr5	135907198	135908198	+	978.4285890000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_018871)	TTS (NM_018871)	19779.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-98396071-4	chr4	98395581	98396581	+	978.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005784, intron 1 of 19)	CpG	255.0	NM_172696	12695.0	Mm.90218	NM_007704	ENSMUSG00000061859	Patj	Cipp|Inadl	PATJ, crumbs cell polarity complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-54060023-4	chr10	54059511	54060511	+	978.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 2 of 12)	intron (NM_008548, intron 2 of 12)	15785.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8729075-4	chr3	8728524	8729524	+	978.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61986.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138928959-4	chr1	138928458	138929458	+	978.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34751.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25140469-4	chr17	25139938	25140938	+	978.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317404, intron 1 of 24)	intron (NM_001317404, intron 1 of 24)	3807.0	NM_001317404	26373.0	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	10.5	29.0	18.5	12.0	24.0	13.5
Merged-chr8-88694450-4	chr8	88693910	88694910	+	978.408325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2618.0	NM_001128170	74256.0	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	3.5	1.5	0.5	0.5	7.0	1.0
Merged-chr2-181917632-4	chr2	181917178	181918178	+	978.392822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53318.0	NM_025901	67005.0	Mm.271986	NM_025901	ENSMUSG00000038628	Polr3k	12.3kDa|1500004O14Rik|AI196849|AU014893|C11|RPC10|RPC11	polymerase (RNA) III (DNA directed) polypeptide K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40660488-3	chr19	40659951	40660951	+	978.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	681.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137850462-4	chr5	137849978	137850978	+	978.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7571.0	NM_133209	170741.0	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-19952561-4	chr5	19952053	19953053	+	978.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015823, intron 1 of 21)	intron (NM_015823, intron 1 of 21)	45035.0	NM_015823	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111107593-4	chr10	111107084	111108084	+	978.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-57218.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-4935311-4	chr5	4934794	4935794	+	978.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 11 of 14)	intron (NM_011074, intron 11 of 14)	-177078.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117362141-4	chr8	117361626	117362626	+	978.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	12956.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41303831-4	chr10	41303327	41304327	+	978.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133999)	promoter-TSS (NM_133999)	-586.0	NM_133999	103199.0	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58512523-6	chr16	58512216	58513216	+	978.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 1 of 10)	intron (NM_001357433, intron 1 of 10)	10710.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112275442-2	chr5	112274942	112275942	+	978.357178	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1249.0	NM_001326590	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	3.0	6.5	2.0	1.5	1.5	3.5
Merged-chr9-113725776-4	chr9	113725282	113726282	+	978.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15691.0	NM_001286599	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-97548729-4	chr13	97548249	97549249	+	978.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11251.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	2.0	26.5	9.5	15.5	20.5	15.0
Merged-chr8-106151917-4	chr8	106151318	106152318	+	978.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357319, intron 1 of 5)	intron (NM_001357319, intron 1 of 5)	1464.0	NM_001357319	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131095133-2	chr1	131094633	131095633	+	978.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	2710.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	21.0	90.5	77.0	45.5	127.5	76.5
Merged-chr1-166921164-4	chr1	166920652	166921652	+	978.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78578.0	NR_037988	100503962.0	Mm.216842	NR_037988	ENSMUSG00000102548	Gm16701	-	predicted gene, 16701	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-38260486-4	chr5	38259950	38260950	+	978.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001356960, exon 1 of 5)	exon (NM_001356960, exon 1 of 5)	265.0	NM_025480	66309.0	Mm.256185	NM_025480	ENSMUSG00000067365	Tmem128	2810021O14Rik	transmembrane protein 128	protein-coding	170.5	505.5	416.0	99.5	319.0	247.5
Merged-chr10-77608800-3	chr10	77608300	77609300	+	978.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301671, intron 1 of 3)	intron (NM_001301671, intron 1 of 3)	2202.0	NM_001301671	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-52270614-3	chr18	52270119	52271119	+	978.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-60917.0	NM_026286	67634.0	Mm.179144	NM_026286	ENSMUSG00000024510	Ftmt	4930447C24Rik|FerH|Fth3|MtF	ferritin mitochondrial	protein-coding	5.0	2.0	0.5	0.0	0.0	0.5
Merged-chr8-40294006-3	chr8	40293510	40294510	+	978.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7057.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	6.5	13.0	15.5	11.0	54.0	12.5
Merged-chr6-87993003-4	chr6	87992511	87993511	+	978.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11328.0	NR_026990	434064.0	Mm.371796	NR_026990	ENSMUSG00000084950	Gm5577	EG434064	predicted gene 5577	ncRNA	0.0	1.0	0.0	0.0	1.0	0.0
Merged-chr5-45926157-4	chr5	45925650	45926650	+	978.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_110478)	TTS (NR_110478)	6259.0	NR_110478	78106.0	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA	13.0	19.0	17.0	5.5	16.0	26.5
Merged-chr2-33371009-3	chr2	33370505	33371505	+	978.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290570, intron 1 of 16)	(CCA)n|Simple_repeat|Simple_repeat	489.0	NM_001290570	241308.0	Mm.274249	NM_175211	ENSMUSG00000038831	Ralgps1	5830418G11Rik|AI853783|AI854138|RALGEF2|RALGPS1A|RalGEF 2|mKIAA0351	Ral GEF with PH domain and SH3 binding motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45897810-4	chr13	45897309	45898309	+	978.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	67182.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27857154-4	chr17	27856626	27857626	+	978.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080769, intron 1 of 20)	CpG	619.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	50.5	66.5	25.5	11.5	80.0	61.5
Merged-chr10-121498842-10	chr10	121498328	121499328	+	978.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22578.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	39.5	79.0	46.5	36.0	131.5	116.0
Merged-chr4-134511013-4	chr4	134510516	134511516	+	978.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081099)	promoter-TSS (NM_001081099)	17.0	NM_001081099	69885.0	Mm.141592	NM_001081099	ENSMUSG00000078521	Aunip	2610002D18Rik|Clhc1	aurora kinase A and ninein interacting protein	protein-coding	1.5	16.0	10.0	2.5	1.5	9.0
Merged-chr9-45238283-4	chr9	45237776	45238776	+	978.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 1 of 4)	intron (NM_001198971, intron 1 of 4)	28431.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	24.0	34.0	14.0	16.5	21.5	22.5
Merged-chr14-50062348-5	chr14	50061875	50062875	+	978.2999880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	22304.0	NM_146316	258313.0	Mm.463727	NM_146316	ENSMUSG00000060523	Olfr726	MOR246-4	olfactory receptor 726	protein-coding	18.5	33.5	8.5	1.5	0.0	1.0
Merged-chr11-78159289-4	chr11	78158778	78159778	+	978.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009423, exon 7 of 7)	3' UTR (NM_009423, exon 7 of 7)	6272.0	NM_009423	22032.0	Mm.390418	NM_009423	ENSMUSG00000017386	Traf4	A530032M13Rik|CART1|msp2	TNF receptor associated factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23679377-4	chr11	23678837	23679837	+	978.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033654, intron 4 of 17)	intron (NM_001033654, intron 4 of 17)	13361.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	0.0	0.5	1.0	0.0	10.0	3.0
Merged-chr11-67564379-4	chr11	67563873	67564873	+	978.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008088, intron 1 of 13)	intron (NM_008088, intron 1 of 13)	-22127.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	1.5	6.5	4.0	3.5	4.0	3.5
Merged-chr19-12441678-3	chr19	12441186	12442186	+	978.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13781.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	54.5	146.5	75.0	49.0	87.5	63.5
Merged-chr2-157049128-4	chr2	157048623	157049623	+	978.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164663, intron 3 of 14)	intron (NM_001164663, intron 3 of 14)	30142.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107837797-4	chr13	107837300	107838300	+	978.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	52264.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	15.5	64.0	40.5	26.5	55.5	28.5
Merged-chr17-35235100-4	chr17	35234606	35235606	+	978.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347351)	promoter-TSS (NM_001347351)	96.0	NM_001347351	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	99.5	232.5	210.0	85.0	216.0	169.0
Merged-chr11-78178626-4	chr11	78178144	78179144	+	978.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106113)	promoter-TSS (NR_106113)	-14.0	NM_001291236	68385.0	Mm.390375	NM_026708	ENSMUSG00000019437	Tlcd1	-	TLC domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6292242-4	chr19	6291722	6292722	+	978.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	-14235.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-77280277-4	chr2	77279784	77280784	+	978.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175465, intron 1 of 17)	CpG	308.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-33986992-4	chr10	33986491	33987491	+	978.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_015526)	TTS (NR_015526)	8064.0	NR_015526	414093.0	Mm.156915	NR_015526	ENSMUSG00000112280	A830082N09Rik	Gm17567	RIKEN cDNA A830082N09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-82122699-4	chr12	82122194	82123194	+	978.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47322.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110887634-4	chr9	110887097	110888097	+	978.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153354, intron 8 of 25)	intron (NR_153354, intron 8 of 25)	7275.0	NM_001146060	235633.0	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	11.0	12.5	10.0	4.0	9.5	16.5
Merged-chr1-80453230-4	chr1	80452743	80453743	+	978.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040460, intron 2 of 2)	intron (NR_040460, intron 2 of 2)	7311.0	NR_040460	72208.0	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan	RIKEN cDNA 1700016L21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79928273-4	chr10	79927775	79928775	+	978.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001288625, intron 1 of 8)	intron (NM_001288625, intron 1 of 8)	934.0	NM_001288625	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-28123265-4	chr5	28122758	28123758	+	978.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42438.0	NM_010134	13799.0	Mm.4298	NM_010134	ENSMUSG00000039095	En2	BB131122|En-2	engrailed 2	protein-coding	0.0	0.0	6.5	0.0	4.0	0.0
Merged-chr5-136140172-4	chr5	136139686	136140686	+	978.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028070, exon 3 of 3)	exon (NM_028070, exon 3 of 3)	1405.0	NM_028070	72041.0	Mm.294725	NM_028070	ENSMUSG00000039754	Alkbh4	2010004B12Rik|Abj4	alkB homolog 4, lysine demethylase	protein-coding	0.0	4.0	3.0	0.0	0.5	1.5
Merged-chr2-117123023-5	chr2	117122535	117123535	+	978.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277256, intron 1 of 4)	intron (NM_001277256, intron 1 of 4)	1964.0	NM_033524	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117146394-4	chr4	117145893	117146893	+	978.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8181.0	NR_028524	100217424.0		NR_028524	ENSMUSG00000065680	Snord38a	MBII-329	small nucleolar RNA, C/D box 38A	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84838861-4	chr1	84838358	84839358	+	978.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025386)	promoter-TSS (NM_025386)	446.0	NM_133975	14897.0	Mm.209265	NM_133975	ENSMUSG00000026219	Trip12	1110036I07Rik|6720416K24Rik|AA410158|Gtl6|TRIP-12	thyroid hormone receptor interactor 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101327447-4	chr15	101326940	101327940	+	978.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34228.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32572327-4	chr4	32571816	32572816	+	978.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_026843)	promoter-TSS (NR_026843)	-654.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	37.5	134.5	93.0	34.0	116.5	101.5
Merged-chr18-5127429-4	chr18	5126924	5127924	+	978.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	38307.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-78299356-4	chr12	78298905	78299905	+	978.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172952, intron 1 of 23)	L1_Mur1|LINE|L1	72750.0	NM_145965	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57549820-4	chr16	57549320	57550320	+	978.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	578.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-77442240-4	chr1	77441768	77442768	+	978.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007936, intron 4 of 17)	intron (NM_007936, intron 4 of 17)	54500.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165883140-4	chr2	165882638	165883638	+	978.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281926)	promoter-TSS (NM_001281926)	-860.0	NM_001281926	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100719436-4	chr11	100718938	100719938	+	978.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305003, intron 2 of 5)	intron (NM_001305003, intron 2 of 5)	5588.0	NM_029307	75482.0	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141264274-2	chr7	141263774	141264774	+	978.1666869999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_016850, exon 7 of 10)	exon (NM_016850, exon 7 of 10)	2150.0	NM_001252601	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20622533-4	chr16	20622021	20623021	+	978.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177940, intron 2 of 18)	intron (NM_177940, intron 2 of 18)	-1243.0	NM_028420	73047.0	Mm.425977	NM_028420	ENSMUSG00000051146	Camk2n2	2900075A18Rik	calcium/calmodulin-dependent protein kinase II inhibitor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35183545-4	chr9	35183074	35184074	+	978.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177847)	TTS (NM_001177847)	-7587.0	NM_027030	69305.0	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	14.5	24.5	20.5	19.5	15.0	33.5
Merged-chr1-92753891-3	chr1	92753390	92754390	+	978.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-77755.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44832305-4	chr7	44831809	44832809	+	978.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_053074)	TTS (NM_053074)	-3979.0	NM_010215	14204.0	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64231005-4	chr5	64230482	64231482	+	978.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	625.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91743207-4	chr16	91742687	91743687	+	978.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	13816.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-96856123-3	chr7	96855608	96856608	+	978.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 24 of 32)	intron (NM_011858, intron 24 of 32)	-54559.0	NR_045874	791381.0	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	-	predicted gene 15413	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-39838067-4	chr5	39837572	39838572	+	978.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-193441.0	NM_010474	15476.0	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-17946295-4	chr2	17945783	17946783	+	978.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50675.0	NM_026627	68231.0	Mm.23887	NM_026627	ENSMUSG00000062651	H2al2a	1700113O17Rik|H2A.Bbd|H2A.L.2|H2afb1|H2al2|TSEG-1|Tseg1	H2A histone family member L2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21333101-4	chr11	21332604	21333604	+	978.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290634, intron 4 of 9)	MIRb|SINE|MIR	11571.0	NR_035454	100316753.0		NR_035454	ENSMUSG00000089555	Mir1933	mir-1933|mmu-mir-1933	microRNA 1933	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106090859-4	chr11	106090274	106091274	+	978.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 1 of 15)	B1_Mur2|SINE|Alu	5872.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-46735975-4	chr13	46735466	46736466	+	978.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8117.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	158.5	299.0	287.0	196.0	279.0	303.5
Merged-chr8-94703599-4	chr8	94703102	94704102	+	978.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7360.0	NM_026385	67801.0	Mm.279977	NM_026385	ENSMUSG00000031775	Pllp	0610010I06Rik|AV001002|Plapi|Tm4sf11	plasma membrane proteolipid	protein-coding	0.0	3.5	3.0	2.0	7.0	5.0
Merged-chr11-99202070-2	chr11	99201570	99202570	+	978.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	28947.0	NM_020618	57376.0	Mm.379086	NM_020618	ENSMUSG00000037935	Smarce1	2810417B20Rik|5830412H02Rik|9030408N19Rik|Baf27	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding	9.5	4.5	2.5	9.5	4.5	2.5
Merged-chr18-8757593-2	chr18	8757093	8758093	+	978.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-455263.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-4025486-2	chr15	4024986	4025986	+	978.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024188)	promoter-TSS (NM_024188)	-942.0	NM_024188	67041.0	Mm.13445	NM_024188	ENSMUSG00000022186	Oxct1	2610008O03Rik|Oxct|Oxct2a|Scot-s	3-oxoacid CoA transferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124755047-2	chr2	124754547	124755547	+	978.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	101466.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33894685-4	chr16	33894189	33895189	+	978.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 5 of 14)	ORR1D2|LTR|ERVL-MaLR	65024.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3915593-4	chr7	3915085	3916085	+	978.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011087)	promoter-TSS (NM_011087)	-84.0	NR_028115	18726.0	Mm.440989	NM_011090	ENSMUSG00000030427	Lilra6	7M1|Pira3	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72172837-4	chr5	72172328	72173328	+	978.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4639.0	NM_001356614	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141681981-4	chr4	141681484	141682484	+	978.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3732.0	NM_023544	69994.0	Mm.441022	NM_023544	ENSMUSG00000040715	Rsc1a1	1700027M01Rik|Rs1	regulatory solute carrier protein, family 1, member 1	protein-coding	14.0	13.5	18.5	7.0	14.5	19.5
Merged-chr16-45158322-4	chr16	45157812	45158812	+	978.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026402)	promoter-TSS (NM_026402)	361.0	NM_001356453	74102.0	Mm.264984	NM_028756	ENSMUSG00000022664	Slc35a5	1010001J06Rik|AU021179|BB097433|D16Ertd450e|D730043G07Rik	solute carrier family 35, member A5	protein-coding	8.0	22.0	17.0	18.5	29.5	19.5
Merged-chr6-128604675-4	chr6	128604172	128605172	+	978.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18262.0	NM_001159902	17057.0	Mm.16729	NM_010737	ENSMUSG00000030361	Klrb1a	Ly55a|NKR-P1.7|NKR-P1A|NKRP12|Nkrp1-a|Nkrp1a|ly-55A	killer cell lectin-like receptor subfamily B member 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-110594330-4	chr8	110593833	110594833	+	978.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172916, intron 79 of 86)	intron (NM_172916, intron 79 of 86)	-24234.0	NR_151674	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86480549-6	chr6	86480069	86481069	+	978.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131125, intron 1 of 4)	intron (NR_131125, intron 1 of 4)	261.0	NR_131125	320486.0	Mm.391625	NR_131125	ENSMUSG00000085589	A430078I02Rik	T25621	RIKEN cDNA A430078I02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21268433-4	chr14	21267909	21268909	+	978.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134079, intron 6 of 10)	RMER19B|LTR|ERVK	192257.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	1.5	4.5	1.5	6.5	2.5	2.0
Merged-chr17-47408498-4	chr17	47408028	47409028	+	978.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6183.0	NM_001172091	75462.0	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	7.0	14.0	18.5	0.0	34.5	7.5
Merged-chr19-56556174-4	chr19	56555647	56556647	+	978.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025811, intron 2 of 10)	intron (NM_025811, intron 2 of 10)	7886.0	NM_025811	66866.0	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58066974-3	chr13	58066467	58067467	+	978.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195075, intron 6 of 16)	intron (NM_001195075, intron 6 of 16)	35461.0	NM_001195075	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	26.0	78.5	34.5	25.0	27.5	34.0
Merged-chr6-50973537-3	chr6	50973046	50974046	+	978.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	197431.0	NR_045984	319981.0	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58453227-4	chr13	58452705	58453705	+	978.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49862.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17883898-4	chr17	17883403	17884403	+	978.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013521)	promoter-TSS (NM_013521)	36.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	15.0	9.0	11.0	19.5	17.0	6.5
Merged-chr17-24895206-4	chr17	24894735	24895735	+	978.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163102)	promoter-TSS (NM_001163102)	115.0	NM_023260	79044.0	Mm.328851	NM_023260	ENSMUSG00000038880	Mrps34	0610007F04Rik|5330430D13Rik|AV001970|Tce2	mitochondrial ribosomal protein S34	protein-coding	21.0	71.5	41.5	25.0	67.0	32.5
Merged-chr18-34247106-4	chr18	34246623	34247623	+	978.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360979)	promoter-TSS (NM_001360979)	-571.0	NM_001360980	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	23.5	53.0	53.0	9.0	48.0	27.0
Merged-chr3-146500666-4	chr3	146500185	146501185	+	978.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027617)	promoter-TSS (NM_027617)	849.0	NM_010318	14707.0	Mm.140804	NM_010318	ENSMUSG00000068523	Gng5	G(y)5	guanine nucleotide binding protein (G protein), gamma 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120515440-4	chr5	120514929	120515929	+	978.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 2 of 13)	RSINE1|SINE|B4	4237.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19958373-4	chr10	19957878	19958878	+	978.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	23852.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171843109-4	chr1	171842554	171843554	+	978.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289470, intron 2 of 8)	L1_Mur3|LINE|L1	3357.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	49.5	148.5	52.0	50.5	128.0	56.5
Merged-chr5-109548974-4	chr5	109548492	109549492	+	978.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10001.0	NM_016715	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	0.0	11.0	1.0	0.0	2.0	1.0
Merged-chr12-83999501-4	chr12	83999007	84000007	+	978.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9995.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3324138-4	chr19	3323631	3324631	+	978.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 1 of 18)	CpG	830.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102233815-4	chr7	102233338	102234338	+	978.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111937, intron 2 of 5)	intron (NR_111937, intron 2 of 5)	10810.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr11-62810585-4	chr11	62810080	62811080	+	978.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9673.0	NM_053169	94092.0	Mm.117087	NM_053169	ENSMUSG00000047821	Trim16	9130006M08Rik|AI482483|EBBP	tripartite motif-containing 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113650557-4	chr5	113650012	113651012	+	978.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008153)	promoter-TSS (NM_008153)	-122.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59211912-4	chr2	59211433	59212433	+	978.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	L3|LINE|CR1	51083.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47877595-4	chr6	47877124	47878124	+	978.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146175)	promoter-TSS (NM_146175)	69.0	NM_146175	101095.0	Mm.440186	NM_146175	ENSMUSG00000025821	Zfp282	AI449432|C81429|E430019K09Rik|HUB1	zinc finger protein 282	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17889880-4	chr17	17889375	17890375	+	978.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008039, intron 1 of 1)	intron (NM_008039, intron 1 of 1)	2051.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136962758-4	chr5	136962267	136963267	+	978.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025562, intron 1 of 4)	intron (NM_025562, intron 1 of 4)	690.0	NM_025562	66437.0	Mm.25849	NM_025562	ENSMUSG00000019054	Fis1	2010003O14Rik|Ttc11	fission, mitochondrial 1	protein-coding	0.0	1.0	6.5	2.5	0.0	0.0
Merged-chr19-55586217-4	chr19	55585726	55586726	+	978.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	Tigger19a|DNA|TcMar-Tigger	115978.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170912449-4	chr1	170911940	170912940	+	978.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029984, intron 2 of 5)	intron (NM_001029984, intron 2 of 5)	501.0	NM_001029984	435653.0	Mm.337931	NM_001029984	ENSMUSG00000070524	Fcrlb	FREB-2|FREB2|FcRL2|Fcrlm2|Fcry|mFCRL2	Fc receptor-like B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-64718863-4	chr11	64718356	64719356	+	978.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-260179.0	NM_023479	68626.0	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	18.5	12.0	11.5	15.5	8.5	5.5
Merged-chr9-58204786-4	chr9	58204328	58205328	+	978.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161541)	promoter-TSS (NM_001161541)	-509.0	NM_001161541	320563.0	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-56272473-4	chr9	56271973	56272973	+	978.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172924, intron 3 of 6)	intron (NM_172924, intron 3 of 6)	-111403.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-140621053-2	chr6	140620553	140621553	+	978.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR88b|LTR|Gypsy?	-1610.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5636978-2	chr17	5636478	5637478	+	978.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	144378.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3162107-3	chr11	3161626	3162626	+	978.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 9 of 32)	intron (NM_030207, intron 9 of 32)	31337.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132662697-2	chr7	132662197	132663197	+	978.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 6 of 6)	RMER19B|LTR|ERVK	52054.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75178838-7	chr14	75178280	75179280	+	978.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	42355.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55766960-1	chr14	55766460	55767460	+	978.0	f1_balb.idr	intron (NM_008519, intron 1 of 1)	B1_Mus2|SINE|Alu	998.0	NM_008519	16995.0	Mm.20853	NM_008519	ENSMUSG00000046908	Ltb4r1	BLT1|BLTR|Ltb4r|mBLTR	leukotriene B4 receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-61407079-4	chr3	61406617	61407617	+	978.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	42610.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51889796-3	chr11	51889301	51890301	+	978.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-32171.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77367344-2	chr15	77366844	77367844	+	978.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31766.0	NM_029419	75761.0	Mm.232636	NM_029419	ENSMUSG00000010601	Apol7a	9130022K13Rik|Apol3	apolipoprotein L 7a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32064126-4	chr16	32063647	32064647	+	978.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177326, intron 1 of 14)	LTR16E2|LTR|ERVL	15195.0	NM_177326	224105.0	Mm.234204	NM_177326	ENSMUSG00000022781	Pak2	5330420P17Rik|A130002K10Rik|AI836325|D16Ertd269e|PAK-2|mKIAA4182	p21 (RAC1) activated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107168867-4	chr13	107168381	107169381	+	978.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146311.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64725515-2	chr17	64725015	64726015	+	978.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 16 of 21)	intron (NM_008549, intron 16 of 21)	-41596.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-121332875-1	chr7	121332375	121333375	+	978.0	f0_c57.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-59421.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74839819-2	chr11	74839319	74840319	+	978.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010813, intron 4 of 5)	intron (NM_010813, intron 4 of 5)	8895.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-162932814-2	chr2	162932314	162933314	+	978.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026499, intron 2 of 5)	intron (NM_026499, intron 2 of 5)	1306.0	NM_026499	67996.0	Mm.24042	NM_026499	ENSMUSG00000016921	Srsf6	1210001E11Rik|AI314910|AW146126|Sfrs6	serine/arginine-rich splicing factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-31738191-2	chr11	31737691	31738691	+	978.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66329.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	2.0	1.0	0.0	2.5	0.0	0.0
Merged-chr5-68033586-4	chr5	68033060	68034060	+	978.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001018019, intron 1 of 3)	intron (NM_001018019, intron 1 of 3)	1725.0	NM_001018019	433899.0	Mm.332422	NM_001018019	ENSMUSG00000068082	Grxcr1	Tg(Eno2-Gabrb3)0370Brll|pi|tde	glutaredoxin, cysteine rich 1	protein-coding	2.5	4.5	2.5	0.0	20.5	0.0
Merged-chr12-98271225-5	chr12	98270727	98271727	+	978.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008152, intron 1 of 1)	Lx2B2|LINE|L1	2592.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144560967-2	chr2	144560474	144561474	+	978.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355379, intron 2 of 19)	B2_Mm1a|SINE|B2	-3925.0	NM_001281816	27054.0	Mm.248492	NM_019787	ENSMUSG00000027429	Sec23b	-	SEC23 homolog B, COPII coat complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31855617-3	chr17	31855116	31856116	+	978.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010831, intron 1 of 13)	CpG-6228	188.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	0.0	1.0	0.5	1.0	2.5	5.5
Merged-chr19-45313550-1	chr19	45313050	45314050	+	978.0	f1_c57bl6.idr	Intergenic	Intergenic	-50184.0	NM_001360122	12234.0	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	5.0	0.0	0.0	0.0	0.0	4.5
Merged-chr15-77839061-4	chr15	77838556	77839556	+	978.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	3119.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171531518-2	chr1	171531018	171532018	+	978.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010584, exon 4 of 8)	exon (NM_010584, exon 4 of 8)	3776.0	NM_010584	16429.0	Mm.247426	NM_010584	ENSMUSG00000038209	Itln1	IntL|Itln|Itln2|Itln3|Itln5|Itlna|Lfr	intelectin 1 (galactofuranose binding)	protein-coding	0.0	0.0	2.0	0.0	0.0	1.0
Merged-chr17-57343133-2	chr17	57342633	57343633	+	978.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-15553.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120523830-2	chr5	120523330	120524330	+	978.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 8 of 13)	G-rich|Low_complexity|Low_complexity	12638.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0.0	1.0	1.5	0.0	2.5	1.0
Merged-chr1-55058200-1	chr1	55057700	55058700	+	978.0	f1_c57bl6.idr	intron (NM_026424, intron 1 of 3)	Lx8|LINE|L1	5430.0	NM_001039710	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	11.5	0.5	5.0	13.0	0.0	5.0
Merged-chr1-161877748-2	chr1	161877237	161878237	+	978.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1055.0	NM_001357402	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	37.0	64.0	59.0	22.0	100.0	73.5
Merged-chr2-25177198-2	chr2	25176698	25177698	+	978.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3560.0	NM_025980	67122.0	Mm.46539	NM_025980	ENSMUSG00000078202	Nrarp	2700054M22Rik	Notch-regulated ankyrin repeat protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39527646-4	chr1	39527142	39528142	+	978.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8059.0	NM_028043	52846.0	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85234607-3	chr11	85234102	85235102	+	978.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028329)	promoter-TSS (NR_028329)	518.0	NM_025825	66884.0	Mm.271997	NM_025825	ENSMUSG00000018481	Appbp2	1300003O07Rik|AI465480|PAT1	amyloid beta precursor protein (cytoplasmic tail) binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-26041518-4	chr16	26041031	26042031	+	978.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173379, intron 1 of 14)	intron (NM_173379, intron 1 of 14)	64253.0	NM_173379	210530.0	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80770474-1	chr7	80769974	80770974	+	978.0	f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	B1_Mur2|SINE|Alu	32857.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	1.0	17.5	17.0	16.0	10.5	11.0
Merged-chr11-61929109-2	chr11	61928609	61929609	+	978.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019921, intron 1 of 14)	intron (NM_019921, intron 1 of 14)	1148.0	NM_019921	56697.0	Mm.274404	NM_019921	ENSMUSG00000047804	Akap10	1500031L16Rik|B130049N18Rik|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-46091131-2	chr9	46090631	46091631	+	978.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 1 of 24)	MTB_Mm|LTR|ERVL-MaLR	78311.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75060718-2	chr15	75060218	75061218	+	978.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-11881.0	NM_001252056	17067.0	Mm.1583	NM_010741	ENSMUSG00000079018	Ly6c1	AA682074|AA959465|Ly-6C|Ly-6C1|Ly6c	lymphocyte antigen 6 complex, locus C1	protein-coding	10.5	7.0	0.0	0.0	1.5	7.0
Merged-chr5-123915060-2	chr5	123914560	123915560	+	978.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026603, intron 2 of 7)	intron (NM_026603, intron 2 of 7)	7785.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	4.0	3.0	2.5	5.5	6.0	6.0
Merged-chr10-50691200-2	chr10	50690700	50691700	+	978.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 14 of 41)	Lx3A|LINE|L1	98531.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50211744-4	chr11	50211231	50212231	+	977.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011018)	promoter-TSS (NM_011018)	-911.0	NM_011018	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-114639514-4	chr9	114639018	114640018	+	977.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153585, intron 1 of 19)	intron (NM_153585, intron 1 of 19)	682.0	NM_153585	78893.0	Mm.283708	NM_153585	ENSMUSG00000056167	Cnot10	2600001P13Rik	CCR4-NOT transcription complex, subunit 10	protein-coding	3.0	4.0	4.5	3.5	5.0	11.5
Merged-chr18-61224466-4	chr18	61223975	61224975	+	977.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146086, intron 1 of 21)	intron (NM_146086, intron 1 of 21)	3976.0	NM_146086	225600.0	Mm.391106	NM_146086	ENSMUSG00000024575	Pde6a	Pdea|nmf282	phosphodiesterase 6A, cGMP-specific, rod, alpha	protein-coding	46.0	102.0	59.0	37.5	79.5	42.0
Merged-chr9-27109672-4	chr9	27109165	27110165	+	977.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023277, intron 1 of 8)	intron (NM_023277, intron 1 of 8)	45756.0	NM_023277	83964.0	Mm.28770	NM_023277	ENSMUSG00000031990	Jam3	1110002N23Rik|JAM-3|JAM-C|Jcam3	junction adhesion molecule 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27615524-6	chr3	27614953	27615953	+	977.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 4 of 26)	intron (NM_001356953, intron 4 of 26)	-30458.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34841925-4	chr19	34841403	34842403	+	977.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114339, intron 1 of 6)	ID_B1|SINE|B4	-21130.0	NR_029783	723826.0		NR_029783	ENSMUSG00000065594	Mir107	Mirn107|mir-107|mmu-mir-107	microRNA 107	ncRNA	7.0	13.5	5.5	15.0	7.0	7.5
Merged-chr3-60527102-4	chr3	60526604	60527604	+	977.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	MIRc|SINE|MIR	25925.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	119.0	255.0	177.0	87.5	145.5	121.0
Merged-chr3-144704147-4	chr3	144703641	144704641	+	977.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 5 of 10)	intron (NM_001282037, intron 5 of 10)	16194.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120873136-3	chr7	120872640	120873640	+	977.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267710, intron 2 of 17)	intron (NM_001267710, intron 2 of 17)	21951.0	NM_001267711	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84455385-4	chr2	84454901	84455901	+	977.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355271, intron 3 of 8)	intron (NM_001355271, intron 3 of 8)	18773.0	NM_011576	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	18.0	10.5	7.5	4.0	12.0	1.0
Merged-chr12-55495276-4	chr12	55494781	55495781	+	977.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2634.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87471614-4	chr11	87471105	87472105	+	977.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	44014.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57888241-4	chr9	57887719	57888719	+	977.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAAA)n|Simple_repeat|Simple_repeat	-22767.0	NM_027086	69459.0	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43531821-2	chr4	43531321	43532321	+	977.916626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011602, exon 57 of 57)	3' UTR (NM_011602, exon 57 of 57)	-8267.0	NM_001277875	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	0.0	8.5	0.0	1.0	0.0	4.0
Merged-chr19-56530415-2	chr19	56529927	56530927	+	977.916626	f0_balb.idr|f1_balb.idr	intron (NR_153440, intron 9 of 9)	intron (NR_153440, intron 9 of 9)	17695.0	NM_001360437	55947.0	Mm.2805	NM_018831	ENSMUSG00000025077	Dclre1a	2810043H12Rik|AU022226|Pso2|Smn1a|Snm1|mKIAA0086	DNA cross-link repair 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73401319-4	chr14	73400813	73401813	+	977.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16024.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-105424485-4	chr11	105424011	105425011	+	977.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039242, intron 4 of 5)	intron (NM_001039242, intron 4 of 5)	32224.0	NM_172568	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	6.5	13.5	8.0	0.0	0.0	1.0
Merged-chr14-33398269-4	chr14	33397783	33398783	+	977.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310452, intron 4 of 10)	intron (NM_001310452, intron 4 of 10)	12741.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-177711197-4	chr1	177710702	177711702	+	977.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25B|LTR|ERVK	-18612.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76306349-4	chr12	76305858	76306858	+	977.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138745, intron 21 of 27)	intron (NM_138745, intron 21 of 27)	-18533.0	NM_001101471	238276.0	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-11214892-3	chr12	11214392	11215392	+	977.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5944.0	NM_019544	56184.0	Mm.117113	NM_019544	ENSMUSG00000047002	Msgn1	Msgn|pMsgn1	mesogenin 1	protein-coding	2.5	2.0	3.0	0.5	1.0	3.0
Merged-chr3-60580098-4	chr3	60579588	60580588	+	977.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	RMER10A|LTR|ERVL	78909.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	33.5	52.0	33.5	27.5	44.0	31.5
Merged-chr13-73469584-4	chr13	73469046	73470046	+	977.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145376, intron 1 of 13)	intron (NM_145376, intron 1 of 13)	2163.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5138915-4	chr17	5138393	5139393	+	977.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	143819.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182282314-4	chr1	182281822	182282822	+	977.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360783)	promoter-TSS (NM_001360783)	-127.0	NM_001360783	13244.0	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-31761027-4	chr18	31760530	31761530	+	977.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001242430, exon 1 of 8)	5' UTR (NM_001242430, exon 1 of 8)	414.0	NM_001242430	225339.0	Mm.290804	NM_153515	ENSMUSG00000041915	Ammecr1l	5430429D03Rik|AU022236|AU040755|AW111353|E230022H04Rik	AMME chromosomal region gene 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-60961232-4	chr1	60960729	60961729	+	977.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16685.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	5.5	19.0	10.5	5.5	19.0	11.5
Merged-chr6-29781961-4	chr6	29781467	29782467	+	977.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	intron (NM_001171000, intron 1 of 16)	13524.0	NM_001171000	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36733825-5	chr18	36733373	36734373	+	977.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-1197.0	NM_028036	71983.0	Mm.135188	NM_028036	ENSMUSG00000006850	Tmco6	2410015B03Rik	transmembrane and coiled-coil domains 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3760434-4	chr2	3759915	3760915	+	977.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	46957.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58514549-2	chr16	58514049	58515049	+	977.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 1 of 10)	intron (NM_001357433, intron 1 of 10)	8877.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128333820-2	chr2	128333320	128334320	+	977.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_028590, intron 1 of 2)	MTE2b|LTR|ERVL-MaLR	95531.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	1.5	0.0	0.0	1.0	0.0	0.5
Merged-chr6-108504424-2	chr6	108503924	108504924	+	977.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 53 of 61)	B4A|SINE|B4	14681.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	36.5	134.5	103.5	73.0	163.0	149.0
Merged-chr9-44319292-2	chr9	44318792	44319792	+	977.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359259, intron 1 of 13)	intron (NM_001359259, intron 1 of 13)	990.0	NM_001359259	71764.0	Mm.491174	NM_027909	ENSMUSG00000032120	C2cd2l	1300006O23Rik|Tmem24	C2 calcium-dependent domain containing 2-like	protein-coding	0.5	7.5	9.0	5.5	19.0	8.5
Merged-chr13-49324469-4	chr13	49323962	49324962	+	977.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15254.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-81933017-2	chr3	81932541	81933541	+	977.833374	f0_balb.idr|f0_c57.idr	intron (NM_177662, intron 1 of 7)	intron (NM_177662, intron 1 of 7)	440.0	NM_177662	229445.0	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|AI118514	cathepsin O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73187033-2	chr14	73186533	73187533	+	977.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	19818.0	NR_030459	751541.0		NR_030459	ENSMUSG00000076121	Mir687	Mirn687|mir-687|mmu-mir-687	microRNA 687	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152531759-6	chr1	152531168	152532168	+	977.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 13 of 17)	intron (NM_016846, intron 13 of 17)	93549.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83659518-3	chr6	83659021	83660021	+	977.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3405.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	9.5	43.5	28.5	74.5	117.0	118.5
Merged-chr7-98360242-4	chr7	98359728	98360728	+	977.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168540, intron 1 of 2)	intron (NM_001168540, intron 1 of 2)	1060.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	15.5	63.5	44.5	20.5	44.0	41.5
Merged-chr5-97061688-4	chr5	97061189	97062189	+	977.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 11 of 15)	intron (NM_080708, intron 11 of 15)	49907.0	NM_001359910	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	5.5	28.5	20.0	3.5	21.0	15.0
Merged-chr11-59201788-4	chr11	59201299	59202299	+	977.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126101)	promoter-TSS (NR_126101)	632.0	NR_037964	72203.0	Mm.339566	NR_037964		2610507I01Rik	5033414D05Rik	RIKEN cDNA 2610507I01 gene	ncRNA	79.0	262.5	171.0	178.0	393.5	271.5
Merged-chr13-98255212-4	chr13	98254736	98255736	+	977.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178918, intron 6 of 12)	intron (NM_178918, intron 6 of 12)	7756.0	NM_178918	105372.0	Mm.28221	NM_178918	ENSMUSG00000041747	Utp15	AW544865	UTP15 small subunit processome component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111041358-4	chr12	111040839	111041839	+	977.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198023, intron 2 of 11)	intron (NM_198023, intron 2 of 11)	1541.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56709876-4	chr18	56709306	56710306	+	977.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010721, intron 1 of 10)	B3|SINE|B2	1993.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.0	13.0	2.5	0.0	8.5	0.5
Merged-chr2-156719091-4	chr2	156718649	156719649	+	977.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040505, intron 1 of 3)	MTB_Mm|LTR|ERVL-MaLR	1760.0	NR_040505	74846.0	Mm.443946	NR_040505	ENSMUSG00000086638	4930405A21Rik	-	RIKEN cDNA 4930405A21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100893624-4	chr11	100893112	100894112	+	977.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_213660, intron 20 of 23)	intron (NM_213660, intron 20 of 23)	33128.0	NM_001164062	20850.0	Mm.277403	NM_011488	ENSMUSG00000004043	Stat5a	AA959963|STAT5	signal transducer and activator of transcription 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-13961746-5	chr14	13961245	13962245	+	977.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025435)	promoter-TSS (NM_025435)	107.0	NM_001359901	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	10.5	12.5	14.5	16.0	11.5	24.0
Merged-chr5-125189754-5	chr5	125189212	125190212	+	977.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-10498.0	NM_001253904	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	1.5	23.0	4.0	1.5	13.0	1.0
Merged-chr17-74668105-4	chr17	74667598	74668598	+	977.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007566, intron 62 of 72)	intron (NM_007566, intron 62 of 72)	-49652.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72329620-4	chr5	72329094	72330094	+	977.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122756, intron 16 of 21)	intron (NM_001122756, intron 16 of 21)	126251.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-86935451-4	chr5	86934957	86935957	+	977.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	-8954.0	NM_152811	71773.0	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40788970-4	chr12	40788473	40789473	+	977.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 31 of 52)	intron (NM_172803, intron 31 of 52)	-235117.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115000277-4	chr11	114999742	115000742	+	977.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134158, intron 2 of 3)	intron (NM_134158, intron 2 of 3)	1638.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84252275-4	chr2	84251773	84252773	+	977.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	172993.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	22.0	25.5	26.0	13.0	6.5	10.0
Merged-chr15-31332800-3	chr15	31332281	31333281	+	977.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027496, intron 1 of 3)	MTEa-int|LTR|ERVL-MaLR	34978.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99247702-8	chr5	99247166	99248166	+	977.7589109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	5261.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102442036-2	chr12	102441536	102442536	+	977.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2223.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	19.5	33.0	26.0	18.5	29.0	13.5
Merged-chr16-38399644-2	chr16	38399144	38400144	+	977.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_134102, intron 9 of 10)	intron (NM_134102, intron 9 of 10)	33501.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-79924755-4	chr7	79924255	79925255	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027420)	TTS (NM_027420)	-4115.0	NM_009682	11778.0	Mm.220173	NM_009682	ENSMUSG00000063801	Ap3s2	[s]3B	adaptor-related protein complex 3, sigma 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-97663050-4	chr1	97662547	97663547	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1029.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-105053346-4	chr9	105052850	105053850	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053159)	promoter-TSS (NM_053159)	82.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	81.0	174.5	137.5	127.0	271.5	181.5
Merged-chr2-79621594-4	chr2	79621097	79622097	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-13828.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	19.5	20.0	6.5	15.0	32.5	14.0
Merged-chr3-61416694-4	chr3	61416197	61417197	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52190.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-144890788-4	chr4	144890276	144891276	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2051.0	NM_001172424	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52298137-4	chr2	52297627	52298627	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010889, intron 27 of 156)	intron (NM_010889, intron 27 of 156)	7125.0	NR_040620	78049.0	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-49107332-4	chr6	49106826	49107826	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023670, intron 8 of 14)	intron (NM_023670, intron 8 of 14)	33531.0	NM_029353	75593.0	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-17159970-4	chr11	17159457	17160457	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024459, intron 1 of 5)	CpG	659.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	35.5	91.0	58.0	36.0	92.0	61.5
Merged-chr12-112628085-2	chr12	112627585	112628585	+	977.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 1 of 12)	intron (NM_007421, intron 1 of 12)	8038.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149303391-4	chr4	149302904	149303904	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008441, intron 1 of 20)	intron (NM_008441, intron 1 of 20)	4294.0	NM_207682	16561.0	Mm.402393	NM_008441	ENSMUSG00000063077	Kif1b	A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204	kinesin family member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115539137-4	chr6	115538641	115539641	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5563.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-77969404-4	chr17	77968901	77969901	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16|LTR|ERVK	-230847.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-22081226-3	chr17	22080729	22081729	+	977.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	84748.0	NM_177596	210853.0	Mm.441622	NM_177596	ENSMUSG00000063383	Zfp947	6720451E15|EG210853|Gm4769	zinc finger protein 947	protein-coding	8.0	0.0	6.0	0.0	0.0	0.0
Merged-chr1-155505168-3	chr1	155504660	155505660	+	977.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21951.0	NR_132128	433367.0	Mm.359304	NR_132128	ENSMUSG00000073535	Gm5532	EG433367	predicted gene 5532	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103117310-7	chr11	103116785	103117785	+	977.710876	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_138753, exon 1 of 1)	exon (NM_138753, exon 1 of 1)	960.0	NM_138753	192231.0	Mm.8763	NM_138753	ENSMUSG00000048878	Hexim1	7330426E13Rik|CLP-1|Clp1|HIS1	hexamethylene bis-acetamide inducible 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51511077-4	chr3	51510566	51511566	+	977.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27100.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-105651340-4	chr7	105650833	105651833	+	977.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153393, intron 4 of 4)	intron (NR_153393, intron 4 of 4)	10888.0	NM_001360054	14356.0	Mm.220330	NM_019502	ENSMUSG00000089847	Timm10b	Fxc1|Tim10b|Tim9b	translocase of inner mitochondrial membrane 10B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-72014032-4	chr1	72013514	72014514	+	977.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8819.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124874531-4	chr6	124873989	124874989	+	977.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013488, intron 3 of 9)	MTE2b|LTR|ERVL-MaLR	-10506.0	NM_001355257	14788.0	Mm.2514	NM_013533	ENSMUSG00000038390	Gpr162	A-2|BC031437|Grca	G protein-coupled receptor 162	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53424841-4	chr19	53424320	53425320	+	977.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34186.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14272289-4	chr2	14271775	14272775	+	977.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 9 of 29)	intron (NM_008625, intron 9 of 29)	11272.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32803736-3	chr16	32803230	32804230	+	977.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6295.0	NM_001145874	224116.0	Mm.153301	NM_146071	ENSMUSG00000035638	Muc20	BC026367	mucin 20	protein-coding	0.0	0.0	0.0	1.0	0.0	1.0
Merged-chr8-120488843-3	chr8	120488326	120489326	+	977.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198671)	promoter-TSS (NM_198671)	-40.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106356671-4	chr9	106356167	106357167	+	977.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-11965.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	15.0	36.5	20.5	9.0	6.5	13.5
Merged-chr16-91466765-3	chr16	91466242	91467242	+	977.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_077219, intron 1 of 1)	intron (NR_077219, intron 1 of 1)	1638.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	21.5	34.5	8.0	6.5	11.5	4.0
Merged-chr7-142342021-3	chr7	142341516	142342516	+	977.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177265, intron 3 of 3)	ORR1E|LTR|ERVL-MaLR	30243.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	6.0	25.0	26.0	0.0	9.5	2.0
Merged-chr15-63270563-3	chr15	63270065	63271065	+	977.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	209043.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163597907-2	chr2	163597407	163598407	+	977.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4407.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121746456-2	chr11	121745956	121746956	+	977.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR72_RN|LTR|ERV1	44029.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49179336-2	chr13	49178836	49179836	+	977.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8211.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51452324-2	chr10	51451820	51452820	+	977.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL1|LINE|L1	-28292.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-91195267-4	chr10	91194759	91195759	+	977.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-23640.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-81057924-4	chr3	81057414	81058414	+	977.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	MT2A|LTR|ERVL	21498.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	11.0	26.5	27.0	11.0	27.5	27.5
Merged-chr15-53399827-4	chr15	53399339	53400339	+	977.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-53656.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83668129-4	chr17	83667644	83668644	+	977.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-36249.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-42077179-4	chr13	42076685	42077685	+	977.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 2 of 8)	ORR1D2|LTR|ERVL-MaLR	25164.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-52424805-4	chr12	52424291	52425291	+	977.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55818.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118362620-3	chr11	118362113	118363113	+	977.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7202.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45593275-4	chr7	45592761	45593761	+	977.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18085.0	NR_038165	71661.0	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11542829-4	chr2	11542335	11543335	+	977.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	B3A|SINE|B2	11094.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6242303-4	chr15	6241789	6242789	+	977.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57500.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6871803-4	chr19	6871302	6872302	+	977.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13591.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-36496966-4	chr3	36496471	36497471	+	977.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9838.0	NR_040590	329623.0	Mm.490730	NR_040590	ENSMUSG00000085320	Gm11548	E330009D11	predicted gene 11548	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27979313-4	chr7	27978725	27979725	+	977.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081021)	promoter-TSS (NM_001081021)	-68.0	NM_001081021	338354.0	Mm.389873	NM_001081021	ENSMUSG00000063047	Zfp780b	B230208L21Rik	zinc finger protein 780B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54140250-4	chr11	54139757	54140757	+	977.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	39333.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-9882030-4	chr10	9881522	9882522	+	977.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081344, intron 2 of 25)	MTB_Mm|LTR|ERVL-MaLR	19018.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	5.0	5.0	1.0	0.0	0.0	8.5
Merged-chr17-32993140-4	chr17	32992677	32993677	+	977.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045559)	promoter-TSS (NM_001045559)	38.0	NM_001045559	240067.0	Mm.246667	NM_199020	ENSMUSG00000053390	Zfp952	BC057593|C920016K16Rik	zinc finger protein 952	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23571817-4	chr13	23571324	23572324	+	977.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178187)	promoter-TSS (NM_178187)	424.0	NM_178196	319181.0	Mm.261673	NM_178196	ENSMUSG00000058385	Hist1h2bg	-	histone cluster 1, H2bg	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-15764326-4	chr6	15763837	15764837	+	977.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	43676.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-52297597-2	chr11	52297097	52298097	+	977.5833130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14583.0	NM_001313981	21414.0	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166688176-4	chr2	166687644	166688644	+	977.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	25688.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-103824842-4	chr5	103824343	103825343	+	977.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133919, intron 7 of 19)	intron (NM_133919, intron 7 of 19)	70270.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128226531-4	chr7	128226005	128227005	+	977.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10852.0	NM_146205	233912.0	Mm.475117	NM_146205	ENSMUSG00000042178	Armc5	AW049683|BC032200	armadillo repeat containing 5	protein-coding	2.5	30.0	11.5	2.5	8.5	24.0
Merged-chr9-40710222-3	chr9	40709784	40710784	+	977.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	B3A|SINE|B2	24320.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	3.5	5.0	4.5	65.5	123.0	122.0
Merged-chr1-153549630-4	chr1	153549087	153550087	+	977.5476070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028749, intron 1 of 11)	CpG	127.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62430634-4	chr10	62430139	62431139	+	977.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359806, intron 13 of 14)	intron (NM_001359806, intron 13 of 14)	-8182.0	NM_145419	216019.0	Mm.213213	NM_145419	ENSMUSG00000020080	Hkdc1	BC016235	hexokinase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100925793-4	chr12	100925281	100926281	+	977.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026681, intron 25 of 29)	intron (NM_026681, intron 25 of 29)	-17583.0	NM_001177673	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-26806521-4	chr9	26806012	26807012	+	977.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310768)	promoter-TSS (NM_001310768)	-44.0	NM_153803	244757.0	Mm.293696	NM_153803	ENSMUSG00000036395	Glb1l2	-	galactosidase, beta 1-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-145205310-4	chr5	145204794	145205794	+	977.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001167944, exon 1 of 4)	5' UTR (NM_001167944, exon 1 of 4)	735.0	NM_001359188	22757.0	Mm.332842	NM_016683	ENSMUSG00000055991	Zkscan5	AI132486|AI326970|Zfp95|hKraba1	zinc finger with KRAB and SCAN domains 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-28413735-4	chr15	28413225	28414225	+	977.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133365, intron 65 of 78)	intron (NM_133365, intron 65 of 78)	209959.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143424074-4	chr5	143423578	143424578	+	977.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20258.0	NM_025841	66913.0	Mm.181880	NM_025841	ENSMUSG00000079111	Kdelr2	1110007A14Rik	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6335537-4	chr2	6335041	6336041	+	977.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080548, intron 1 of 14)	intron (NM_001080548, intron 1 of 14)	12784.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-144244372-3	chr1	144243918	144244918	+	977.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_015811)	TTS (NM_015811)	4686.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171111310-5	chr1	171110841	171111841	+	977.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10320.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	48.5	140.0	134.0	35.5	142.5	115.0
Merged-chr11-68973645-6	chr11	68973157	68974157	+	977.5277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001285442, exon 1 of 5)	exon (NM_001285442, exon 1 of 5)	198.0	NM_021329	57785.0	Mm.143774	NM_021329	ENSMUSG00000032892	Rangrf	2400006H24Rik|Mog1|Rangnrf	RAN guanine nucleotide release factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74916330-2	chr15	74915830	74916830	+	977.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34626.0	NM_025929	67038.0	Mm.154566	NM_025929	ENSMUSG00000063522	2010109I03Rik	Ly6m	RIKEN cDNA 2010109I03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102578875-4	chr11	102578378	102579378	+	977.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040286, exon 2 of 3)	non-coding (NR_040286, exon 2 of 3)	241.0	NR_040286	100040792.0	Mm.277966	NR_040286	ENSMUSG00000078640	Gm11627	-	predicted gene 11627	ncRNA	0.0	1.5	0.5	0.0	1.5	0.5
Merged-chr12-85467148-4	chr12	85466664	85467664	+	977.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6726.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33400385-4	chr16	33399876	33400876	+	977.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358569)	promoter-TSS (NM_001358569)	-69.0	NM_001358569	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48275095-4	chr17	48274573	48275573	+	977.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172623, exon 6 of 6)	3' UTR (NM_172623, exon 6 of 6)	10778.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	31.0	76.0	55.0	26.5	54.0	39.0
Merged-chr2-154547799-2	chr2	154547302	154548302	+	977.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021546, intron 5 of 12)	intron (NM_021546, intron 5 of 12)	-1102.0	NM_029305	75480.0	Mm.440434	NM_029305	ENSMUSG00000038523	1700003F12Rik	-	RIKEN cDNA 1700003F12 gene	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr16-20371914-4	chr16	20371396	20372396	+	977.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013790, intron 17 of 29)	intron (NM_013790, intron 17 of 29)	-46492.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62010678-2	chr11	62010178	62011178	+	977.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310526, intron 1 of 7)	intron (NM_001310526, intron 1 of 7)	53915.0	NM_001310526	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-73571654-2	chr18	73571154	73572154	+	977.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1051.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-46185313-2	chr9	46184813	46185813	+	977.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 6 of 24)	intron (NM_027498, intron 6 of 24)	-43317.0	NM_009692	11806.0	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117120853-2	chr5	117120353	117121353	+	977.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199685, intron 1 of 20)	intron (NM_001199685, intron 1 of 20)	724.0	NM_001199685	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	0.5	1.0	8.5	0.0	2.0	6.0
Merged-chr9-98987126-2	chr9	98986626	98987626	+	977.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011810, intron 1 of 4)	intron (NM_011810, intron 1 of 4)	753.0	NM_001122851	23873.0	Mm.74605	NM_011810	ENSMUSG00000032463	Faim	-	Fas apoptotic inhibitory molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116020726-4	chr11	116020277	116021277	+	977.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	3727.0	NM_008211	15081.0	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	0.0	4.5	11.5	0.0	5.0	11.5
Merged-chr19-41895737-4	chr19	41895249	41896249	+	977.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199447, intron 1 of 33)	intron (NM_199447, intron 1 of 33)	404.0	NM_199447	107094.0	Mm.276044	NM_199447	ENSMUSG00000035049	Rrp12	AA408556|AA536972|mKIAA0690	ribosomal RNA processing 12 homolog (S. cerevisiae)	protein-coding	18.0	57.0	31.0	13.0	36.5	21.0
Merged-chr13-12466751-2	chr13	12466251	12467251	+	977.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5013.0	NM_001291057	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-105691061-4	chr7	105690555	105691555	+	977.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	45529.0	NM_025897	101867.0	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102076950-2	chr7	102076450	102077450	+	977.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011644, intron 3 of 21)	B2_Mm2|SINE|B2	5731.0	NM_011644	102443351.0	Mm.292904	NM_011644	ENSMUSG00000070425	Xntrpc	Xndr-trpc2	Xndc1-transient receptor potential cation channel, subfamily C, member 2 readthrough	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr9-35122689-2	chr9	35122189	35123189	+	977.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_029475, intron 2 of 5)	intron (NR_029475, intron 2 of 5)	-5825.0	NM_009178	20443.0	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	SIAT4-C|ST3Gal IV|ST3GalIV|Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27741021-2	chr2	27740521	27741521	+	977.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 2 of 9)	intron (NM_001290481, intron 2 of 9)	30438.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-75822385-2	chr6	75821885	75822885	+	977.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1420092.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	0.0	0.0	4.5	0.0	0.0	0.0
Merged-chr15-6709266-2	chr15	6708766	6709766	+	977.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030168, intron 2 of 37)	CpG-4767	885.0	NM_030168	78757.0	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64323688-2	chr5	64323188	64324188	+	977.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 13 of 18)	intron (NM_001289514, intron 13 of 18)	93331.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	19.0	5.0	5.0	0.5	2.0	3.5
Merged-chr13-52603444-4	chr13	52602953	52603953	+	977.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 1 of 13)	intron (NM_011518, intron 1 of 13)	6571.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43529265-2	chr7	43528765	43529765	+	977.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021293, intron 5 of 5)	intron (NM_021293, intron 5 of 5)	3906.0	NM_001111058	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34564561-4	chr1	34564070	34565070	+	977.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3627.0	NM_009356	21756.0	Mm.14418	NM_009356	ENSMUSG00000037529	Prss40	Tesp2	protease, serine 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5220156-2	chr17	5219656	5220656	+	977.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	MER53|DNA|hAT	198611.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-121447320-2	chr2	121446821	121447821	+	977.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-1877.0	NM_011354	378702.0	Mm.262252	NM_011354	ENSMUSG00000074884	Serf2	C80083|Msmac1l|m4F5rel	small EDRK-rich factor 2	protein-coding	11.5	12.5	13.5	4.5	10.5	13.5
Merged-chr2-126609841-2	chr2	126609341	126610341	+	977.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008230, intron 2 of 11)	MuRRS-int|LTR|ERV1	8837.0	NM_008230	15186.0	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	0.0	0.5	0.0	0.0	2.5	0.0
Merged-chr10-82854886-2	chr10	82854386	82855386	+	977.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042523, intron 1 of 14)	L2|LINE|L2	-4320.0	NM_001042513	50493.0	Mm.210155	NM_015762	ENSMUSG00000020250	Txnrd1	TR|TR1|TrxR1	thioredoxin reductase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41445871-4	chr19	41445348	41446348	+	977.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60778.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	16.0	19.0	12.0	7.0	23.0	8.5
Merged-chr1-64119776-7	chr1	64119278	64120278	+	977.488098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	1611.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-51468746-5	chr6	51468253	51469253	+	977.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016806, intron 1 of 10)	intron (NM_016806, intron 1 of 10)	1141.0	NR_104468	53379.0	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	125.0	396.0	259.0	147.5	370.0	265.0
Merged-chr8-33733043-6	chr8	33732556	33733556	+	977.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167922, intron 1 of 7)	intron (NM_001167922, intron 1 of 7)	717.0	NM_001167922	68153.0	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding	61.5	107.5	103.0	60.0	122.0	87.0
Merged-chr10-12997296-4	chr10	12996794	12997794	+	977.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11156.0	NM_175102	66125.0	Mm.29743	NM_175102	ENSMUSG00000078348	Sf3b5	10kDa|1110005L13Rik|AU043053|Sf3b10	splicing factor 3b, subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107378355-4	chr11	107377859	107378859	+	977.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	92361.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-60492427-4	chr9	60491915	60492915	+	977.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040426, intron 2 of 17)	CT-rich|Low_complexity|Low_complexity	18620.0	NM_001040426	207596.0	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-43410480-4	chr11	43409987	43410987	+	977.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15494.0	NM_013917	30939.0	Mm.6856	NM_013917	ENSMUSG00000020415	Pttg1	AW555095|C87862|Pttg|Pttg3	pituitary tumor-transforming gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58829038-4	chr15	58828523	58829523	+	977.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-5596.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32562874-3	chr11	32562381	32563381	+	977.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	29615.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	8.0	24.0	14.0	5.5	10.0	15.5
Merged-chr19-53496810-3	chr19	53496306	53497306	+	977.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-32010.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	3.5	16.0	2.5	7.0	15.0	5.0
Merged-chr1-149958081-4	chr1	149957663	149958663	+	977.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	3127.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30423033-7	chr7	30422497	30423497	+	977.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172142)	promoter-TSS (NM_172142)	-278.0	NM_172142	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	116.0	237.5	163.5	156.5	200.5	162.0
Merged-chr16-20085782-4	chr16	20085269	20086269	+	977.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11785.0	NM_029436	75785.0	Mm.392450	NM_029436	ENSMUSG00000062901	Klhl24	1110046J11Rik|4930429H24Rik|6530402O20Rik|C85082	kelch-like 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25297513-4	chr7	25296910	25297910	+	977.40625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008776, exon 2 of 6)	exon (NM_008776, exon 2 of 6)	545.0	NM_008776	18476.0	Mm.597	NM_008776	ENSMUSG00000005447	Pafah1b3	Pafahg|mus[g]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-93595839-5	chr15	93595319	93596319	+	977.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033217)	promoter-TSS (NM_001033217)	72.0	NM_001033217	106042.0	Mm.150314	NM_001033217	ENSMUSG00000036158	Prickle1	1110058P22Rik|AW215793|Prickle|b2b019Clo|mpk1	prickle planar cell polarity protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29396363-4	chr17	29395834	29396834	+	977.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35420.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	62.0	184.0	101.5	42.5	188.0	87.5
Merged-chr7-80402202-4	chr7	80401687	80402687	+	977.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081454, intron 1 of 15)	CpG	625.0	NM_011046	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	9.5	37.5	17.5	7.5	31.0	11.5
Merged-chr15-78246340-4	chr15	78245862	78246862	+	977.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008677, intron 1 of 9)	intron (NM_008677, intron 1 of 9)	1551.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	85.0	113.5	93.0	70.5	187.0	131.0
Merged-chr17-3160864-4	chr17	3160360	3161360	+	977.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134123, intron 4 of 19)	CT-rich|Low_complexity|Low_complexity	45888.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91132267-4	chr2	91131764	91132764	+	977.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008653, intron 22 of 31)	intron (NM_008653, intron 22 of 31)	14120.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	0.5	0.0	8.0	6.0	6.0	6.5
Merged-chr14-120762395-4	chr14	120761833	120762833	+	977.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-148861.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-85574221-3	chr17	85573721	85574721	+	977.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44175.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17727930-4	chr10	17727384	17728384	+	977.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4656.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.0	0.0	2.5	0.0	0.0	2.5
Merged-chr1-45865543-4	chr1	45865027	45866027	+	977.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60067.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59862583-4	chr4	59862095	59863095	+	977.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 2 of 8)	L1_Mus4|LINE|L1	52461.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	2.5	8.5	4.5	2.0	6.0	3.5
Merged-chr12-35038790-4	chr12	35038292	35039292	+	977.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8397.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	51.0	96.0	68.0	46.0	119.0	54.5
Merged-chr17-35254903-4	chr17	35254406	35255406	+	977.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	3617.0	NR_106169	102465886.0		NR_106169	ENSMUSG00000098269	Mir8094	Gm27513|mmu-mir-8094	microRNA 8094	ncRNA	3.5	15.5	2.5	4.0	13.0	12.5
Merged-chr14-73446140-3	chr14	73445644	73446644	+	977.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60855.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52999650-4	chr2	52999128	53000128	+	977.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	141760.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-31211191-3	chr9	31210691	31211691	+	977.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357698, intron 1 of 17)	CpG	657.0	NM_001357698	11804.0	Mm.19133	NM_009691	ENSMUSG00000031996	Aplp2	AI790698|APLP-2|CDEBP	amyloid beta (A4) precursor-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57525787-4	chr9	57525293	57526293	+	977.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007747, intron 1 of 4)	ID_B1|SINE|B4	4561.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140795051-3	chr5	140794546	140795546	+	977.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 1 of 3)	intron (NM_010302, intron 1 of 3)	35385.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-41238315-4	chr12	41237825	41238825	+	977.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	214235.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30699950-4	chr2	30699458	30700458	+	977.30835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-21252.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-105923028-3	chr14	105922525	105923525	+	977.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26206.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-171329095-4	chr2	171328594	171329594	+	977.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	597287.0	NM_001163686	76829.0	Mm.41633	NM_029761	ENSMUSG00000027560	Dok5	2700055C10Rik	docking protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-95924714-4	chr5	95924189	95925189	+	977.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32250.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52038034-4	chr2	52037552	52038552	+	977.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009398)	promoter-TSS (NM_009398)	-61.0	NM_009398	21930.0	Mm.3509	NM_009398	ENSMUSG00000053475	Tnfaip6	TSG-6|Tnfip6|Tsg6	tumor necrosis factor alpha induced protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36471125-4	chr18	36470659	36471659	+	977.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-16664.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	9.0	10.0	7.5	0.5	8.5	7.5
Merged-chr14-62892701-4	chr14	62892210	62893210	+	977.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 2 of 11)	intron (NM_175546, intron 2 of 11)	27168.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	14.5	40.5	16.5	11.0	35.5	9.5
Merged-chr19-17125570-4	chr19	17125090	17126090	+	977.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_181348, exon 9 of 20)	exon (NM_181348, exon 9 of 20)	169472.0	NM_181348	353211.0	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	2.0	20.5	19.5	3.5	42.0	22.5
Merged-chr19-56703241-4	chr19	56702736	56703736	+	977.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19136.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5911638-4	chr13	5911156	5912156	+	977.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	50167.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122372871-3	chr3	122372374	122373374	+	977.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46883.0	NM_013867	29815.0	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	10.0	5.0	4.0	2.0	14.5	5.5
Merged-chr6-129088752-4	chr6	129088247	129089247	+	977.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	12156.0	NM_153506	232409.0	Mm.30870	NM_153506	ENSMUSG00000030155	Clec2e	Clra|clr-a	C-type lectin domain family 2, member e	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-135252706-7	chr6	135252228	135253228	+	977.257141	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080553, intron 1 of 5)	intron (NM_001080553, intron 1 of 5)	1608.0	NM_010352	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	2.0	1.0	0.5	2.5	1.0	7.5
Merged-chr13-81238140-4	chr13	81237637	81238637	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 85 of 89)	intron (NM_054053, intron 85 of 89)	274063.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-72390130-4	chr2	72389646	72390646	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178084)	TTS (NM_178084)	-86073.0	NM_025866	66953.0	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118104185-4	chr11	118103701	118104701	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167746, intron 19 of 80)	MER74A|LTR|ERVL	25018.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-11718363-4	chr18	11717869	11718869	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081223, intron 8 of 18)	intron (NM_001081223, intron 8 of 18)	61020.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35907622-4	chr16	35907138	35908138	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30832.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60803075-4	chr18	60802557	60803557	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010545)	promoter-TSS (NM_010545)	-792.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	207.5	499.5	244.5	120.5	521.5	267.5
Merged-chr11-113617825-4	chr11	113617324	113618324	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1657.0	NM_009217	20606.0		NM_009217	ENSMUSG00000047904	Sstr2	SRIF-1|SS2R|SSTR-2|Smstr-2|Smstr2|sst2	somatostatin receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81015320-2	chr15	81014820	81015820	+	977.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 13 of 13)	intron (NM_001082536, intron 13 of 13)	37555.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6454902-4	chr2	6454408	6455408	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102172.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50321484-4	chr11	50320987	50321987	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110500, intron 1 of 14)	intron (NM_001110500, intron 1 of 14)	4186.0	NM_001110499	12330.0	Mm.248827	NM_007597	ENSMUSG00000020368	Canx	1110069N15Rik|AI988026|Cnx|D11Ertd153e	calnexin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21237257-4	chr9	21236750	21237750	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016679, exon 1 of 5)	exon (NM_016679, exon 1 of 5)	2082.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-115816075-4	chr3	115815567	115816567	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71992.0	NR_027894	68161.0	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	15.5	38.5	31.5	17.5	73.0	31.5
Merged-chr1-157445586-4	chr1	157445090	157446090	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12978.0	NM_001356418	226527.0	Mm.215960	NM_001033284	ENSMUSG00000033488	Cryzl2	-	crystallin zeta like 2	protein-coding	3.5	16.0	6.0	2.5	21.0	15.5
Merged-chr11-50285419-4	chr11	50284915	50285915	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 1 of 4)	RLTR20B2|LTR|ERVK	6921.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77806943-4	chr9	77806443	77807443	+	977.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52408.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	2.0	3.5	0.5	2.0	2.0	4.0
Merged-chr13-92651142-4	chr13	92650633	92651633	+	977.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172588, intron 1 of 11)	MIRb|SINE|MIR	39995.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-79920643-4	chr7	79920140	79921140	+	977.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009682)	promoter-TSS (NM_009682)	0.0	NM_009682	11778.0	Mm.220173	NM_009682	ENSMUSG00000063801	Ap3s2	[s]3B	adaptor-related protein complex 3, sigma 2 subunit	protein-coding	0.0	5.0	3.0	6.5	0.0	3.5
Merged-chr9-32680317-4	chr9	32679794	32680794	+	977.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-15748.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34780667-4	chr2	34780155	34781155	+	977.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145522, exon 7 of 8)	exon (NM_145522, exon 7 of 8)	8565.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44514289-4	chr9	44513791	44514791	+	977.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007551, exon 2 of 2)	exon (NM_007551, exon 2 of 2)	12130.0	NM_007551	12145.0	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	43.5	57.0	47.5	24.5	50.0	41.5
Merged-chr10-127572736-3	chr10	127572216	127573216	+	977.2000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 31 of 88)	intron (NM_008512, intron 31 of 88)	-38157.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	3.0	4.5	2.5	4.0	3.0	4.5
Merged-chr14-70062299-5	chr14	70061897	70062897	+	977.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15048.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-117778728-4	chr14	117778223	117779223	+	977.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011821, intron 4 of 8)	intron (NM_011821, intron 4 of 8)	175124.0	NR_105747	102465148.0		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12131485-4	chr18	12130984	12131984	+	977.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024182, intron 1 of 12)	intron (NM_024182, intron 1 of 12)	2634.0	NM_024182	66878.0	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	5.5	17.0	8.0	0.0	20.5	9.0
Merged-chr4-53521714-4	chr4	53521192	53522192	+	977.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133891, intron 4 of 15)	L1MB3|LINE|L1	81279.0	NM_133891	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105877654-4	chr3	105877152	105878152	+	977.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	L1MEc|LINE|L1	6794.0	NM_001174169	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	28.5	38.0	25.5	26.5	33.0	23.5
Merged-chr19-45574067-3	chr19	45573534	45574534	+	977.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172639, intron 4 of 5)	intron (NM_172639, intron 4 of 5)	13449.0	NM_172639	226162.0	Mm.21978	NM_172639	ENSMUSG00000041035	Dpcd	Ndac	deleted in primary ciliary dyskinesia	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32450000-4	chr2	32449503	32450503	+	977.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194335)	promoter-TSS (NM_194335)	-454.0	NM_194335	71254.0	Mm.102341	NM_194335	ENSMUSG00000039164	Naif1	2310007O20Rik|4933440H19Rik	nuclear apoptosis inducing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-26637258-4	chr11	26636717	26637717	+	977.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-43297.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	34.0	66.0	89.5	53.0	26.0	22.5
Merged-chr19-55571577-2	chr19	55571077	55572077	+	977.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	Tigger5b|DNA|TcMar-Tigger	130627.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-66332393-4	chr8	66331886	66332886	+	977.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 4 of 7)	Lx8b|LINE|L1	-53915.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128782392-4	chr2	128781873	128782873	+	977.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 13 of 18)	intron (NM_008587, intron 13 of 18)	-35930.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	15.0	44.5	24.5	17.0	52.0	31.0
Merged-chr6-86503692-4	chr6	86503190	86504190	+	977.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15463.0	NR_040292	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85288638-4	chr12	85288132	85289132	+	977.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172414)	promoter-TSS (NM_172414)	41.0	NM_172414	72350.0	Mm.158810	NM_172414	ENSMUSG00000045064	Zc2hc1c	2810002I04Rik|AV046379|Fam164c	zinc finger, C2HC-type containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-118179762-4	chr6	118179273	118180273	+	977.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080780, intron 4 of 18)	intron (NM_001080780, intron 4 of 18)	17971.0	NM_009050	19713.0	Mm.57199	NM_009050	ENSMUSG00000030110	Ret	PTC|RET51|RET9|c-Ret	ret proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-41618610-4	chr3	41618093	41619093	+	977.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53713.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	8.5	11.5	1.5	3.0	7.5	3.0
Merged-chr11-75168206-4	chr11	75167678	75168678	+	977.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001098203)	promoter-TSS (NM_001098203)	-26.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	1.0	6.0	23.5	20.5	9.0	8.5
Merged-chr16-94239334-4	chr16	94238843	94239843	+	977.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 5 of 10)	intron (NM_001360045, intron 5 of 10)	50948.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88496525-3	chr17	88496025	88497025	+	977.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33599.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	1.0	8.5	4.5	6.0	1.0	3.5
Merged-chr8-3631722-4	chr8	3631211	3632211	+	977.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357168, intron 1 of 18)	intron (NM_001357168, intron 1 of 18)	602.0	NM_011503	20911.0	Mm.7247	NM_011503	ENSMUSG00000004626	Stxbp2	C79054|Munc-18-2|Munc-18b|Munc18b|Sxtbp2|Sxtp2|Unc18-2|Unc18b|muSec1	syntaxin binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23912252-4	chr18	23911763	23912763	+	977.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42425.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88097922-4	chr7	88097419	88098419	+	977.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081414, intron 9 of 9)	intron (NM_001081414, intron 9 of 9)	-180166.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50050533-4	chr11	50050041	50051041	+	977.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 1 of 7)	intron (NM_001290750, intron 1 of 7)	-19161.0	NR_029769	723845.0		NR_029769	ENSMUSG00000065417	Mir340	Mirn340|mir-340|mmu-mir-340	microRNA 340	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21351864-4	chr5	21351360	21352360	+	977.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	MusHAL1|LINE|L1	-20813.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-59317597-4	chr1	59317100	59318100	+	977.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356389, intron 10 of 13)	intron (NM_001356389, intron 10 of 13)	60694.0	NM_001356389	271697.0	Mm.297713	NM_001033373	ENSMUSG00000026023	Cdk15	Als2cr7|Pftk2	cyclin-dependent kinase 15	protein-coding	10.0	0.0	1.0	0.0	4.5	3.5
Merged-chr17-8163531-3	chr17	8163024	8164024	+	977.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1994.0	NM_001197046	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66839593-4	chr7	66839095	66840095	+	977.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033877)	promoter-TSS (NM_001033877)	-140.0	NM_001033877	233332.0	Mm.445763	NM_001033877	ENSMUSG00000058145	Adamts17	AU023434	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4061329-4	chr19	4060787	4061787	+	977.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1840.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-137119036-3	chr2	137118538	137119538	+	977.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2518.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38110801-3	chr16	38110297	38111297	+	977.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 1 of 11)	RSINE1|SINE|B4	-21537.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	1.0	12.5	12.0	0.0	1.5	8.5
Merged-chr17-71479706-3	chr17	71479201	71480201	+	977.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-4358.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	9.0	10.5	3.5	2.0	0.0	0.0
Merged-chr1-157008861-3	chr1	157008362	157009362	+	977.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69236.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	43.0	80.5	62.0	60.0	72.0	90.5
Merged-chr17-79015969-3	chr17	79015469	79016469	+	977.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171004, intron 1 of 18)	intron (NM_001171004, intron 1 of 18)	4847.0	NM_001171004	75292.0	Mm.252776	NM_029239	ENSMUSG00000024070	Prkd3	4930557O20Rik|5730497N19Rik|PKD3|Pkcnu|Prkcn	protein kinase D3	protein-coding	11.5	4.0	2.5	2.0	2.5	3.0
Merged-chr19-55820430-4	chr19	55819922	55820922	+	977.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-74899.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24384688-4	chr5	24384177	24385177	+	977.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008713)	TTS (NM_008713)	7466.0	NM_001002897	213948.0	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125406657-4	chr5	125406157	125407157	+	977.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16640.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125306561-4	chr5	125306061	125307061	+	977.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	PB1D9|SINE|Alu	34533.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121450096-4	chr5	121449611	121450611	+	977.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026129, intron 1 of 2)	intron (NM_026129, intron 1 of 2)	2363.0	NM_026129	67397.0	Mm.154570	NM_026129	ENSMUSG00000029616	Erp29	1200015M03Rik|2810446M09Rik|AW209030|Erp28|Erp31|PDI-Db	endoplasmic reticulum protein 29	protein-coding	12.0	52.0	23.0	20.5	35.0	12.5
Merged-chr6-135065508-4	chr6	135064992	135065992	+	977.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181444)	promoter-TSS (NM_181444)	-170.0	NM_181444	232431.0	Mm.23575	NM_181444	ENSMUSG00000046733	Gprc5a	Rai3|Raig1	G protein-coupled receptor, family C, group 5, member A	protein-coding	2.0	7.0	5.0	7.0	0.0	5.0
Merged-chr18-46357102-4	chr18	46356598	46357598	+	977.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45170.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127058412-4	chr10	127057923	127058923	+	977.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033262, intron 1 of 3)	intron (NM_001033262, intron 1 of 3)	1761.0	NM_001033262	216438.0	Mm.37892	NM_001033262	ENSMUSG00000040502	March9	AI608492|BC019560	membrane-associated ring finger (C3HC4) 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99267535-4	chr5	99267019	99268019	+	977.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14592.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	72.0	134.0	105.5	25.5	106.5	71.5
Merged-chr5-31571515-4	chr5	31571006	31572006	+	977.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102275)	promoter-TSS (NR_102275)	-109.0	NR_102275	100740.0	Mm.23370	NR_102275		AI839979	-	expressed sequence AI839979	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-24493606-4	chr12	24493120	24494120	+	977.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4961.0	NM_020614	21340.0	Mm.39082	NM_020614	ENSMUSG00000059669	Taf1b	4930408G01Rik|A230108M10Rik|TAFI68|Tafi86|p63	TATA-box binding protein associated factor, RNA polymerase I, B	protein-coding	14.5	22.0	28.0	14.0	14.5	18.5
Merged-chr4-62265631-4	chr4	62265123	62266123	+	977.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20806.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59534216-2	chr11	59533716	59534716	+	977.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7353.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53529777-4	chr19	53529250	53530250	+	977.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085390, intron 1 of 3)	intron (NM_001085390, intron 1 of 3)	432.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-109289048-4	chr14	109288546	109289546	+	977.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-374807.0	NM_199065	76965.0	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88200247-6	chr8	88199707	88200707	+	977.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001164497, exon 2 of 13)	exon (NM_001164497, exon 2 of 13)	994.0	NM_001164498	214627.0	Mm.491211	NM_001164497	ENSMUSG00000036779	Papd5	5730445M16Rik|5830428A09	PAP associated domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35007809-2	chr17	35007309	35008309	+	977.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011690, intron 8 of 29)	B3|SINE|B2	6902.0	NM_011690	22321.0	Mm.28420	NM_011690	ENSMUSG00000007029	Vars	Bat6|D17H6S56E|G7a|Vars2	valyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55792094-4	chr19	55791612	55792612	+	977.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	50302.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83656906-2	chr11	83656406	83657406	+	977.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5678.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152040047-2	chr4	152039547	152040547	+	977.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_131076, intron 1 of 10)	MIR|SINE|MIR	726.0	NM_028727	74035.0	Mm.275803	NM_028727	ENSMUSG00000028948	Nol9	4632412I24Rik|6030462G04Rik|AI449622|AW490720	nucleolar protein 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108618361-1	chr6	108617861	108618861	+	977.0	f0_balb.idr	intron (NR_104577, intron 1 of 6)	intron (NR_104577, intron 1 of 6)	4806.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	1.0	0.0	0.0	0.0	0.0	1.0
Merged-chr8-84065754-2	chr8	84065254	84066254	+	977.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1082.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	50.0	90.0	70.5	41.0	108.5	63.0
Merged-chr5-140613425-2	chr5	140612925	140613925	+	977.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008494, intron 6 of 7)	intron (NM_008494, intron 6 of 7)	6084.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117794754-2	chr10	117794254	117795254	+	977.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2049.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148400334-4	chr5	148399846	148400846	+	977.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007513)	promoter-TSS (NM_007513)	-442.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6911711-2	chr19	6911211	6912211	+	977.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026306)	TTS (NM_026306)	-1605.0	NM_001358444	54683.0	Mm.279782	NM_012021	ENSMUSG00000024953	Prdx5	AOEB166|AOPP|PLP|Pmp20|Prdx6|PrxV	peroxiredoxin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6456276-4	chr11	6455766	6456766	+	977.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-11823.0	NM_001347064	77605.0	Mm.27624	NM_029938	ENSMUSG00000041126	H2afv	C530002L11Rik|H2a.z-2|H2av|Tg(Wnt1-cre)11Rth|Wnt1-Cre|Wnt1::Cre|Wnt1cre	H2A histone family, member V	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12558346-4	chr19	12557831	12558831	+	976.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-15179.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20403687-4	chr11	20403181	20404181	+	976.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-70968.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116319207-4	chr11	116318683	116319683	+	976.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12433.0	NM_001347636	53413.0	Mm.22530	NM_016857	ENSMUSG00000020792	Exoc7	Exo70|sec70	exocyst complex component 7	protein-coding	0.0	11.0	5.5	1.5	6.0	3.5
Merged-chr15-62104800-4	chr15	62104297	62105297	+	976.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	65540.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-83972335-4	chr12	83971831	83972831	+	976.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15530.0	NM_134188	171210.0	Mm.371675	NM_134188	ENSMUSG00000021226	Acot2	AA571646|MTE-I|Mte1	acyl-CoA thioesterase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116531449-4	chr7	116530962	116531962	+	976.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360375, intron 11 of 14)	intron (NM_001360375, intron 11 of 14)	27093.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-75835709-4	chr3	75835194	75836194	+	976.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121255.0	NM_175193	73124.0	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-5051675-4	chr7	5051229	5052229	+	976.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026900, intron 1 of 1)	CpG	197.0	NM_026900	68992.0	Mm.41484	NM_026900	ENSMUSG00000055633	Zfp580	1500015O20Rik|AI838225|Znf580	zinc finger protein 580	protein-coding	2.5	5.5	8.5	3.5	4.5	11.5
Merged-chr13-97567847-4	chr13	97567388	97568388	+	976.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046157, intron 2 of 2)	intron (NR_046157, intron 2 of 2)	7888.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52823964-4	chr13	52823464	52824464	+	976.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4b|LINE|L1	-66759.0	NR_027893	105404.0	Mm.184173	NR_027893		BB123696	-	expressed sequence BB123696	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48101098-4	chr17	48100641	48101641	+	976.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10763.0	NR_110485	320638.0	Mm.404482	NR_110485		A730006G06Rik	-	RIKEN cDNA A730006G06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-57973719-4	chr13	57973222	57974222	+	976.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	49478.0	NR_030544	100124491.0		NR_030544	ENSMUSG00000077962	Mir874	Mirn874|mir-874|mmu-mir-874	microRNA 874	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53760140-2	chr11	53759640	53760640	+	976.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3514.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28698335-4	chr17	28697844	28698844	+	976.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	5776.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-64987010-4	chr18	64986479	64987479	+	976.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	-36548.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	33.5	27.0	56.5	28.5	58.0	35.5
Merged-chr10-37192220-7	chr10	37191739	37192739	+	976.904785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53313.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-107277654-4	chr8	107277160	107278160	+	976.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).3	intron (NR_039557, intron 2 of 3).3	-15810.0	NM_018823	54446.0	Mm.390057	NM_018823	ENSMUSG00000003847	Nfat5	AI225870|B130038B15Rik|CAG-8|CAG80|NFATL1|OREBP|TonEBP|mKIAA0827|nfatz	nuclear factor of activated T cells 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98026668-3	chr11	98026174	98027174	+	976.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159483)	promoter-TSS (NM_001159483)	-36.0	NM_001159483	19921.0	Mm.10247	NM_009078	ENSMUSG00000017404	Rpl19	-	ribosomal protein L19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32147679-3	chr4	32147182	32148182	+	976.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	183575.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	6.0	8.5	7.0	6.0	20.0	11.5
Merged-chr7-34272676-3	chr7	34272170	34273170	+	976.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172741, intron 1 of 12)	intron (NM_172741, intron 1 of 12)	12939.0	NM_172741	233103.0	Mm.491097	NM_172741	ENSMUSG00000066571	4931406P16Rik	AA553327|mKIAA0355	RIKEN cDNA 4931406P16 gene	protein-coding	1.0	1.5	2.5	0.0	0.5	0.5
Merged-chr6-120480568-3	chr6	120480085	120481085	+	976.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 12 of 12)	intron (NM_008359, intron 12 of 12)	13222.0	NM_033567	94047.0	Mm.23088	NM_033567	ENSMUSG00000094626	Tmem121b	AW048664|Cecr6	transmembrane protein 121B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112298358-4	chr5	112297871	112298871	+	976.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	21680.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	9.0	32.5	12.5	9.5	23.5	21.5
Merged-chr18-4921515-4	chr18	4921021	4922021	+	976.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109035.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136618777-4	chr1	136618294	136619294	+	976.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6107.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46273765-4	chr18	46273269	46274269	+	976.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172627, intron 2 of 8)	intron (NM_172627, intron 2 of 8)	7081.0	NM_172627	225467.0	Mm.262096	NM_172627	ENSMUSG00000024477	Pggt1b	2010207C17Rik|2610100E13|AI451237|AI551093|BGG1|GGT1	protein geranylgeranyltransferase type I, beta subunit	protein-coding	30.5	73.0	34.5	20.5	42.0	29.5
Merged-chr16-30968626-4	chr16	30968150	30969150	+	976.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 3 of 3)	intron (NM_198626, intron 3 of 3)	112782.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	29.5	42.0	36.0	48.0	113.0	74.5
Merged-chr7-102222437-4	chr7	102221938	102222938	+	976.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145583)	promoter-TSS (NM_145583)	-590.0	NR_111938	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	3.5	0.5	2.0	1.0	8.5	1.5
Merged-chr17-56443463-4	chr17	56443003	56444003	+	976.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252455, intron 6 of 27)	intron (NM_001252455, intron 6 of 27)	18718.0	NM_001252456	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-45011613-4	chr12	45011131	45012131	+	976.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144552, intron 2 of 5)	intron (NM_144552, intron 2 of 5)	62852.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	11.5	5.0	3.0	0.0	0.0	0.5
Merged-chr11-95830462-2	chr11	95829962	95830962	+	976.875	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163464, exon 8 of 8)	3' UTR (NM_001163464, exon 8 of 8)	5962.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-90238816-4	chr11	90238307	90239307	+	976.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10669.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101583190-6	chr11	101582591	101583591	+	976.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359325, intron 1 of 7)	MT2B|LTR|ERVL	792.0	NM_001359325	217203.0	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32040476-4	chr17	32039983	32040983	+	976.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028244, intron 1 of 15)	RSINE1|SINE|B4	4321.0	NM_028244	72462.0	Mm.102761	NM_028244	ENSMUSG00000058392	Rrp1b	2600005C20Rik|D030064A17|Kiaa0179|mKIAA0179	ribosomal RNA processing 1 homolog B (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69071188-4	chr8	69070657	69071657	+	976.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153054, intron 5 of 16)	intron (NM_153054, intron 5 of 16)	-17579.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	18.0	20.0	19.5	90.5	185.5	82.5
Merged-chr9-40323491-2	chr9	40322991	40323991	+	976.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	-2168.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123136604-4	chr5	123136118	123137118	+	976.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3989.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	19.5	20.0	25.5	27.0	35.0	35.0
Merged-chr13-74463290-4	chr13	74462762	74463762	+	976.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30688.0	NM_146231	235956.0		NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129470541-2	chr6	129470041	129471041	+	976.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_020008, intron 2 of 5)	intron (NM_020008, intron 2 of 5)	2238.0	NM_001309637	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	18.5	77.0	44.5	34.5	68.5	42.5
Merged-chr9-62913697-7	chr9	62913212	62914212	+	976.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 6 of 13)	MIRc|SINE|MIR	-51688.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67263056-4	chr17	67262559	67263559	+	976.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	91400.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-47224075-4	chr13	47223645	47224645	+	976.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 3 of 7)	intron (NM_146042, intron 3 of 7)	30142.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	56.0	134.0	56.5	85.0	129.0	84.5
Merged-chr11-21220920-4	chr11	21220421	21221421	+	976.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18111.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25157389-4	chr12	25156888	25157888	+	976.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28214.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	3.0	14.0	4.0	5.0	16.0	3.0
Merged-chr1-166137702-4	chr1	166137207	166138207	+	976.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360925, intron 1 of 5)	intron (NM_001360925, intron 1 of 5)	7486.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31164372-5	chr14	31163813	31164813	+	976.7999880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138672, intron 1 of 68)	intron (NM_138672, intron 1 of 68)	4328.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29468842-4	chr19	29468355	29469355	+	976.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	intron (NM_021396, intron 5 of 5)	53132.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-91141740-4	chr10	91141253	91142253	+	976.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17790.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-108031468-4	chr5	108030966	108031966	+	976.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-34208.0	NM_001359088	17765.0	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	2.5	6.0	1.5	1.0	6.0	1.5
Merged-chr8-79447508-4	chr8	79446991	79447991	+	976.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48023.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26502023-4	chr17	26501509	26502509	+	976.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	6463.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	8.5	23.5	10.0	7.0	9.5	7.5
Merged-chr5-87204520-7	chr5	87204064	87205064	+	976.785706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	50224.0	NM_053215	112417.0	Mm.160362	NM_053215	ENSMUSG00000057425	Ugt2b37	0610033E06Rik	UDP glucuronosyltransferase 2 family, polypeptide B37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98813511-3	chr11	98813028	98814028	+	976.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138660, intron 3 of 13)	intron (NM_138660, intron 3 of 13)	-3439.0	NR_033551	100037262.0	Mm.442062	NR_033551	ENSMUSG00000075576	Gm12359	-	predicted gene 12359	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75484883-3	chr10	75484384	75485384	+	976.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32497.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155764136-4	chr2	155763639	155764639	+	976.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11203.0	NM_010808	17391.0	Mm.389325	NM_010808	ENSMUSG00000027612	Mmp24	AU040325|MMP-21|MT5-MMP|MT5MMP|MTMMP5	matrix metallopeptidase 24	protein-coding	5.0	17.0	15.0	4.5	12.5	2.5
Merged-chr3-95662511-4	chr3	95662007	95663007	+	976.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008562, exon 3 of 3)	3' UTR (NM_008562, exon 3 of 3)	3786.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133872669-4	chr4	133872176	133873176	+	976.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009097, intron 2 of 21)	intron (NM_009097, intron 2 of 21)	2055.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	20.0	71.5	12.0	31.0	50.5	22.5
Merged-chr16-4782683-4	chr16	4782192	4783192	+	976.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358082, intron 1 of 5)	intron (NM_001358082, intron 1 of 5)	6770.0	NM_001358078	66626.0	Mm.157648	NM_025670	ENSMUSG00000004071	Cdip1	2700048O17Rik|5730403B10Rik|AU018521|AW742692|CDIP	cell death inducing Trp53 target 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-31950985-4	chr19	31950487	31951487	+	976.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82226.0	NM_001081074	69865.0	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-4996515-4	chr17	4996062	4997062	+	976.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 1 of 19)	CpG-5917	1488.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-69702734-4	chr9	69702222	69703222	+	976.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58218.0	NM_022378	64290.0	Mm.440890	NM_022378	ENSMUSG00000059246	Foxb1	C43|Fkh5|Foxb1a|Foxb1b|Hfh-e5.1|Mf3|Twh	forkhead box B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111771525-4	chr10	111771023	111772023	+	976.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102853.0	NR_046029	629206.0	Mm.391444	NR_046029	ENSMUSG00000112533	Gm20758	-	predicted gene, 20758	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-93195870-4	chr5	93195355	93196355	+	976.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017367, intron 2 of 6)	intron (NM_017367, intron 2 of 6)	10640.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	2.0	19.0	8.5	3.5	8.5	10.5
Merged-chr11-105901710-4	chr11	105901201	105902201	+	976.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181071, intron 17 of 25)	intron (NM_181071, intron 17 of 25)	42786.0	NM_007805	13056.0	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	8.5	10.5	9.5	2.0	3.0	3.5
Merged-chr7-31181392-4	chr7	31180899	31181899	+	976.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16|LTR|ERVK	19041.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	0.0	8.0	3.5	0.0	7.5	6.5
Merged-chr14-64753574-4	chr14	64753081	64754081	+	976.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081177, intron 21 of 39)	intron (NM_001081177, intron 21 of 39)	101050.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	3.0	0.0	2.0	3.0	0.0	2.0
Merged-chr11-117878999-4	chr11	117878514	117879514	+	976.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5488.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29391445-4	chr19	29390950	29391950	+	976.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19469.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-16213479-4	chr4	16212975	16213975	+	976.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045765, intron 3 of 6)	Lx8b|LINE|L1	49365.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-130231631-4	chr10	130231114	130232114	+	976.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20486.0	NM_146300	258297.0	Mm.377419	NM_146300	ENSMUSG00000045559	Olfr827	MOR210-5	olfactory receptor 827	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155162901-4	chr4	155162369	155163369	+	976.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	59666.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117783241-4	chr11	117782718	117783718	+	976.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001195088, exon 2 of 16)	exon (NM_001195088, exon 2 of 16)	560.0	NM_001195088	217356.0	Mm.116675	NM_181856	ENSMUSG00000050106	Tmc8	EVIN2|Ever2|mFLJ00400	transmembrane channel-like gene family 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-105781529-4	chr12	105781019	105782019	+	976.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030187, intron 17 of 17)	intron (NM_030187, intron 17 of 17)	-3178.0	NM_011112	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	26.0	18.0	58.0	16.0	49.0	45.0
Merged-chr6-116631173-4	chr6	116630656	116631656	+	976.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2157.0	NM_026057	67255.0	Mm.18810	NM_026057	ENSMUSG00000059878	Zfp422	2900028O21Rik|AU041373|KOX15|Krox-25-2|Krox-26|Krox25|Krox26|Znf22	zinc finger protein 422	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166294329-4	chr2	166293822	166294822	+	976.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033467, intron 2 of 2)	intron (NR_033467, intron 2 of 2)	20414.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3275998-4	chr7	3275476	3276476	+	976.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13062.0	NM_001093764	50918.0	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107142977-4	chr3	107142495	107143495	+	976.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40148.0	NM_001081140	242151.0	Mm.245155	NM_001081140	ENSMUSG00000042861	Kcna10	Gm1962|Kcna8|Kv1.8	potassium voltage-gated channel, shaker-related subfamily, member 10	protein-coding	0.0	3.0	4.0	2.5	5.0	5.0
Merged-chr7-30562813-3	chr7	30562281	30563281	+	976.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170760)	promoter-TSS (NM_170760)	403.0	NM_025498	66340.0	Mm.86557	NM_025498	ENSMUSG00000036835	Psenen	1700023M09Rik|Pen-2	presenilin enhancer gamma secretase subunit	protein-coding	50.5	62.5	57.0	53.0	102.0	94.5
Merged-chr15-57980908-4	chr15	57980435	57981435	+	976.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4968.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27193518-3	chr3	27192967	27193967	+	976.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	10463.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126688179-4	chr8	126687700	126688700	+	976.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94764.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.0	1.0	2.5	0.0	1.0	1.5
Merged-chr16-57244062-2	chr16	57243563	57244563	+	976.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12597.0	NM_001358433	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	0.0	3.0	1.0	0.0	1.5	1.0
Merged-chr4-154025992-4	chr4	154025486	154026486	+	976.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163722)	promoter-TSS (NM_001163722)	58.0	NM_001163722	68859.0	Mm.477488	NM_001033144	ENSMUSG00000078350	Smim1	0610011H04Rik|1190007F08Rik|2700009I11Rik	small integral membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-140908802-4	chr7	140908318	140909318	+	976.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_015583)	TTS (NR_015583)	2754.0	NR_015583	212965.0	Mm.387212	NR_015583	ENSMUSG00000109628	BC024386	BC039766	cDNA sequence BC023486	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21610068-4	chr9	21609564	21610564	+	976.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1735.0	NR_003372	666043.0	Mm.247282	NR_003372		Gm7904	EG666043	predicted gene 7904	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80151903-4	chr10	80151405	80152405	+	976.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347117, intron 4 of 7)	intron (NM_001347117, intron 4 of 7)	2223.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28693673-4	chr7	28693198	28694198	+	976.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207238, intron 2 of 5)	intron (NM_207238, intron 2 of 5)	554.0	NM_001163702	233040.0	Mm.116116	NM_207238	ENSMUSG00000037463	Fbxo27	E130008B10Rik|FBG5|Gm161	F-box protein 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47649613-2	chr6	47649113	47650113	+	976.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5481.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-7626968-4	chr18	7626439	7627439	+	976.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161620)	promoter-TSS (NM_001161620)	-76.0	NM_001161620	75739.0	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	5.0	7.0	13.0	0.0	0.0	2.5
Merged-chr5-64391614-4	chr5	64391130	64392130	+	976.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76312.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	3.5	28.5	10.0	13.5	34.5	23.0
Merged-chr7-123394273-4	chr7	123393778	123394778	+	976.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025304, intron 1 of 10)	intron (NM_025304, intron 1 of 10)	-13539.0	NM_001355050	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59156481-3	chr15	59155968	59156968	+	976.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR50|LTR|ERVL	-74442.0	NM_144800	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	1.0	1.5	3.0	0.0	0.0	0.0
Merged-chr13-60670088-3	chr13	60669602	60670602	+	976.611084	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	67891.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	17.0	44.0	39.5	31.0	33.0	40.5
Merged-chr6-43384548-3	chr6	43384045	43385045	+	976.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 8 of 8)	intron (NM_013861, intron 8 of 8)	-57884.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26604417-4	chr2	26603930	26604930	+	976.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026212)	promoter-TSS (NM_026212)	-13.0	NM_026212	67512.0	Mm.24244	NM_026212	ENSMUSG00000026922	Agpat2	2510002J07Rik|AV000834|BSCL|BSCL1|LPAAB|LPAAT-beta	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158176553-4	chr2	158176069	158177069	+	976.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-15439.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19062040-2	chr3	19061540	19062540	+	976.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	101055.0	NM_028840	74252.0	Mm.200383	NM_028840	ENSMUSG00000027599	Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138195700-4	chr5	138195200	138196200	+	976.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177878)	TTS (NM_177878)	1386.0	NM_177878	330216.0	Mm.19719	NM_177878	ENSMUSG00000049285	Mblac1	-	metallo-beta-lactamase domain containing 1	protein-coding	33.0	120.0	78.0	64.0	148.0	87.0
Merged-chr16-48833840-4	chr16	48833345	48834345	+	976.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8707.0	NM_020509	57262.0	Mm.441868	NM_020509	ENSMUSG00000061100	Retnla	1810019L16Rik|Fizz-1|Fizz1|HIMF|RELM-alpha|RELMa|RELMalpha|Xcp2	resistin like alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99903056-4	chr12	99902561	99903561	+	976.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028354, intron 6 of 15)	intron (NM_028354, intron 6 of 15)	18546.0	NM_028354	104884.0	Mm.312323	NM_028354	ENSMUSG00000021177	Tdp1	2810481F14Rik|4921509N21Rik|AI838772|AW493413|E430034L06Rik|MLZ-501|SCAN1	tyrosyl-DNA phosphodiesterase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36590086-4	chr16	36589602	36590602	+	976.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-27968.0	NM_013803	12374.0	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63803237-4	chr9	63802734	63803734	+	976.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45240.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-114652589-4	chr4	114652095	114653095	+	976.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-169125.0	NR_033617	433746.0	Mm.388908	NR_033617	ENSMUSG00000055198	Gm12830	-	predicted gene 12830	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28168856-4	chr7	28168342	28169342	+	976.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007991)	promoter-TSS (NM_007991)	-906.0	NM_007991	14113.0	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35837054-4	chr17	35836479	35837479	+	976.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011655, intron 1 of 3)	intron (NM_011655, intron 1 of 3)	1322.0	NM_011655	22154.0	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	18.5	58.5	39.0	11.0	56.5	24.5
Merged-chr10-17989286-4	chr10	17988798	17989798	+	976.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33792.0	NM_001359560	73112.0	Mm.276041	NM_028440	ENSMUSG00000078453	Abracl	1700028I04Rik|3110003A17Rik	ABRA C-terminal like	protein-coding	6.0	16.5	14.0	9.0	43.0	9.0
Merged-chr11-80137001-3	chr11	80136491	80137491	+	976.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183275, exon 4 of 4)	exon (NM_183275, exon 4 of 4)	5162.0	NM_183275	68550.0	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5820440-3	chr18	5819939	5820939	+	976.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	227792.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	0.5	3.5	1.0	4.5	3.5	5.0
Merged-chr8-84799321-4	chr8	84798830	84799830	+	976.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081982, intron 1 of 9)	CpG	1008.0	NM_010906	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	0.0	16.5	9.5	8.0	14.0	6.0
Merged-chr3-61321868-4	chr3	61321387	61322387	+	976.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42620.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	1.5	0.0	7.5	4.0	2.0	2.5
Merged-chr16-70329686-4	chr16	70329169	70330169	+	976.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 1 of 15)	intron (NM_028803, intron 1 of 15)	15720.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	31.0	54.0	39.5	16.0	40.0	36.0
Merged-chr7-101074694-4	chr7	101074111	101075111	+	976.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-34164.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-10912808-4	chr4	10912295	10913295	+	976.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38297.0	NM_026005	67157.0	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	24.5	13.5	1.0	27.5	10.5	3.0
Merged-chr11-69325805-4	chr11	69325295	69326295	+	976.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010599)	promoter-TSS (NM_010599)	-463.0	NM_010599	16499.0	Mm.232472	NM_010599	ENSMUSG00000018470	Kcnab3	C330022D06Rik|Kcnab4|mKv(beta)4	potassium voltage-gated channel, shaker-related subfamily, beta member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51091612-4	chr14	51091100	51092100	+	976.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021472, intron 1 of 1)	intron (NM_021472, intron 1 of 1)	523.0	NM_021472	58809.0	Mm.202665	NM_021472	ENSMUSG00000021876	Rnase4	C730049F20Rik|Rab1	ribonuclease, RNase A family 4	protein-coding	26.0	128.5	43.0	26.0	99.0	67.5
Merged-chr6-100210919-4	chr6	100210453	100211453	+	976.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76405.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165917411-4	chr2	165916909	165917909	+	976.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-32571.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	3.5	21.0	10.5	16.0	27.5	15.0
Merged-chr17-10344881-4	chr17	10344483	10345483	+	976.5277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20381.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36518018-4	chr15	36517515	36518515	+	976.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025712, intron 11 of 13)	B3|SINE|B2	-21224.0	NM_175134	68839.0	Mm.396537	NM_175134	ENSMUSG00000048307	Ankrd46	1110054N06Rik|AI314978|AI987733	ankyrin repeat domain 46	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29054056-4	chr17	29053550	29054550	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21390.0	NR_036613	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	1.5	7.5	4.0	1.5	9.5	7.5
Merged-chr2-166825160-2	chr2	166824660	166825660	+	976.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085495, intron 1 of 38)	intron (NM_001085495, intron 1 of 38)	19579.0	NM_001085495	99371.0	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77130697-4	chr10	77130178	77131178	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009929, intron 2 of 41)	intron (NM_009929, intron 2 of 41)	-16973.0	NM_001109991	12822.0	Mm.4352	NM_009929	ENSMUSG00000001435	Col18a1	-	collagen, type XVIII, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33929919-4	chr17	33929430	33930430	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009059)	promoter-TSS (NM_009059)	36.0	NM_009059	19732.0	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	31.0	89.5	56.0	23.5	83.5	51.5
Merged-chr13-97711855-2	chr13	97711355	97712355	+	976.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	35556.0	NR_152140	403201.0	Mm.110162	NR_152140		5330416C01Rik	Gm532	RIKEN cDNA 5330416C01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-98057141-4	chr3	98056629	98057629	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 2 of 33)	intron (NM_010928, intron 2 of 33)	43591.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36721752-2	chr16	36721252	36722252	+	976.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 6 of 7)	intron (NM_001285788, intron 6 of 7)	27774.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145291555-4	chr6	145291058	145292058	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41006.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	5.0	34.0	11.5	37.5	49.0	12.0
Merged-chr17-5711547-4	chr17	5711060	5712060	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 3 of 8)	intron (NM_146073, intron 3 of 8)	-87097.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46129915-2	chr17	46129415	46130415	+	976.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029338, intron 4 of 4)	intron (NM_029338, intron 4 of 4)	14283.0	NM_029338	75564.0	Mm.17993	NM_029338	ENSMUSG00000023966	Rsph9	1700027N10Rik	radial spoke head 9 homolog (Chlamydomonas)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38186423-2	chr18	38185923	38186923	+	976.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23339.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90882673-2	chr5	90882173	90883173	+	976.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-8572.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	9.5	43.0	24.5	15.5	50.5	44.5
Merged-chr10-19031153-4	chr10	19030654	19031654	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15744.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	18.5	21.5	10.5	10.5	15.5	10.0
Merged-chr14-36969878-2	chr14	36969378	36970378	+	976.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1114.0	NM_027045	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-91223174-4	chr13	91222668	91223668	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025770, intron 1 of 7)	intron (NM_025770, intron 1 of 7)	819.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4606659-2	chr16	4606159	4607159	+	976.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031184, intron 1 of 6)	intron (NM_031184, intron 1 of 6)	11946.0	NM_031184	83396.0	Mm.134072	NM_031184	ENSMUSG00000014303	Glis2	Gli5|Klf16|Nkl	GLIS family zinc finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98946283-4	chr10	98945794	98946794	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	31142.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101355166-4	chr4	101354687	101355687	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040640, intron 1 of 3)	intron (NR_040640, intron 1 of 3)	1061.0	NR_040708	77866.0	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83855373-2	chr7	83854873	83855873	+	976.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	28968.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	5.0	13.0	3.5	1.0	0.0	6.0
Merged-chr5-36831282-2	chr5	36830782	36831782	+	976.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008550)	promoter-TSS (NM_008550)	-633.0	NM_008550	17160.0	Mm.761	NM_008550	ENSMUSG00000029119	Man2b2	mKIAA0935	mannosidase 2, alpha B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-108318851-4	chr4	108318359	108319359	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9293.0	NM_027250	69893.0	Mm.28354	NM_027250	ENSMUSG00000048351	Coa7	2010305A19Rik|AI451324|D4Ertd796e|Selrc1	cytochrome c oxidase assembly factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121376062-4	chr10	121375550	121376550	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 3 of 13)	intron (NM_029364, intron 3 of 13)	10960.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97999385-4	chr11	97998860	97999860	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3187.0	NR_152188	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-99218640-3	chr13	99218136	99219136	+	976.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	33813.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85114324-2	chr1	85113824	85114824	+	976.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4471.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50112957-4	chr6	50112470	50113470	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361248, intron 1 of 13)	intron (NM_001361248, intron 1 of 13)	2110.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65674997-2	chr9	65674497	65675497	+	976.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1551.0	NM_010952	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	0.0	1.5	0.5	0.0	1.5	0.5
Merged-chr12-100108441-2	chr12	100107941	100108941	+	976.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3890.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65022189-2	chr9	65021689	65022689	+	976.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021345)	promoter-TSS (NM_021345)	-472.0	NM_021345	57874.0	Mm.308180	NM_021345	ENSMUSG00000033629	Hacd3	4930523M17Rik|AW742319|B-ind1|Hcad3|Hspc121|Ptplad1	3-hydroxyacyl-CoA dehydratase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-30860878-3	chr3	30860366	30861366	+	976.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286994, intron 1 of 3)	Lx8b|LINE|L1	4916.0	NM_001286994	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10025710-4	chr19	10025225	10026225	+	976.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153790, intron 1 of 10)	intron (NR_153790, intron 1 of 10)	7531.0	NM_001347430	74760.0	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-66700333-4	chr1	66699819	66700819	+	976.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025683)	promoter-TSS (NM_025683)	-512.0	NM_025683	66646.0	Mm.240912	NM_025683	ENSMUSG00000026005	Rpe	2810429B02Rik|5730518J08Rik	ribulose-5-phosphate-3-epimerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44522132-4	chr9	44521650	44522650	+	976.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007551, intron 1 of 1)	intron (NM_007551, intron 1 of 1)	4271.0	NM_007551	12145.0	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr6-136716277-4	chr6	136715786	136716786	+	976.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145067, intron 18 of 25)	intron (NM_145067, intron 18 of 25)	-54393.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	5.5	19.0	8.5	7.5	1.5	4.0
Merged-chr11-55106830-4	chr11	55106239	55107239	+	976.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010299, intron 2 of 3)	intron (NM_010299, intron 2 of 3)	8754.0	NM_010299	14667.0	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120972030-4	chr6	120971449	120972449	+	976.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270475, intron 21 of 31)	intron (NM_001270475, intron 21 of 31)	13105.0	NR_138099	215458.0	Mm.122399	NR_138099		LOC215458	-	uncharacterized LOC215458	ncRNA	6.0	2.0	1.0	0.0	8.5	0.5
Merged-chr4-133941659-4	chr4	133941158	133942158	+	976.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26333.0	NM_016957	15331.0	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	16.5	13.5	19.5	13.0	44.5	38.0
Merged-chr7-143037523-4	chr7	143037021	143038021	+	976.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015529, intron 2 of 3)	ORR1D2|LTR|ERVL-MaLR	-15229.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	13.0	32.5	17.5	22.5	18.0	15.5
Merged-chr15-80445086-3	chr15	80444608	80445608	+	976.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6505.0	NR_155274	102633578.0	Mm.397484	NR_155274	ENSMUSG00000115888	Gm31369	-	predicted gene, 31369	ncRNA	18.5	30.5	19.0	0.0	1.0	7.0
Merged-chr11-21729257-3	chr11	21728756	21729756	+	976.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145425, intron 12 of 17)	intron (NM_145425, intron 12 of 17)	156975.0	NM_145425	216560.0	Mm.138090	NM_145425	ENSMUSG00000020319	Wdpcp	AV249152	WD repeat containing planar cell polarity effector	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-64958314-4	chr18	64957837	64958837	+	976.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	-65190.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	86.0	147.0	108.0	22.0	57.0	36.5
Merged-chr4-43047420-4	chr4	43046911	43047911	+	976.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1191.0	NM_172691	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	4.5	12.0	24.5	14.5	41.0	15.5
Merged-chr12-32339965-4	chr12	32339477	32340477	+	976.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-38812.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-72838370-4	chr17	72837873	72838873	+	976.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357370, intron 1 of 2)	intron (NM_001357370, intron 1 of 2)	325.0	NM_001357371	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	35.5	64.5	69.0	43.0	79.0	91.5
Merged-chr11-106135319-4	chr11	106134814	106135814	+	976.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 6 of 15)	intron (NM_011947, intron 6 of 15)	24613.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-115052835-4	chr4	115052344	115053344	+	976.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3582.0	NM_011527	21349.0	Mm.239869	NM_011527	ENSMUSG00000028717	Tal1	Hpt|SCL/tal-1|Scl|bHLHa17|tal-1	T cell acute lymphocytic leukemia 1	protein-coding	0.0	0.0	0.5	0.0	0.0	1.0
Merged-chr19-60755928-4	chr19	60755432	60756432	+	976.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178421)	promoter-TSS (NM_178421)	-55.0	NM_178421	332397.0	Mm.186390	NM_178421	ENSMUSG00000072437	Nanos1	NOS-1	nanos C2HC-type zinc finger 1	protein-coding	0.0	2.0	0.0	0.0	0.0	3.0
Merged-chr13-28953037-5	chr13	28952517	28953517	+	976.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009238, exon 1 of 1)	exon (NM_009238, exon 1 of 1)	682.0	NM_009238	20677.0	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-45092585-4	chr12	45092074	45093074	+	976.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18091.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77441768-4	chr11	77441244	77442244	+	976.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 12 of 14)	intron (NM_177710, intron 12 of 14)	-22169.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19999921-4	chr10	19999391	20000391	+	976.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 1 of 29)	C-rich|Low_complexity|Low_complexity	65365.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-55293571-4	chr3	55293075	55294075	+	976.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357475, intron 3 of 16)	intron (NM_001357475, intron 3 of 16)	51211.0	NM_001357466	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-62642699-4	chr17	62642204	62643204	+	976.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010109, intron 2 of 3)	intron (NM_010109, intron 2 of 3)	238613.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115343791-4	chr6	115343289	115344289	+	976.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17162.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88586329-4	chr1	88585791	88586791	+	976.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	34774.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-90841653-4	chr8	90841166	90842166	+	976.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 1 of 39)	intron (NM_177224, intron 1 of 39)	12831.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	36.5	58.0	54.0	32.0	110.0	46.0
Merged-chr8-117282758-4	chr8	117282267	117283267	+	976.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	25748.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182512012-4	chr1	182511516	182512516	+	976.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009794, intron 2 of 20)	intron (NM_009794, intron 2 of 20)	5594.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95681244-2	chr10	95680744	95681744	+	976.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12D|LTR|ERVK	-117098.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73040203-4	chr2	73039687	73040687	+	976.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59741.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81542036-3	chr10	81541532	81542532	+	976.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010301, intron 1 of 6)	intron (NM_010301, intron 1 of 6)	3014.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71002670-4	chr2	71002191	71003191	+	976.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 2 of 9)	intron (NM_145524, intron 2 of 9)	15683.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86215631-3	chr15	86215110	86216110	+	976.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 1 of 12)	intron (NM_145476, intron 1 of 12)	1151.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135806815-4	chr5	135806309	135807309	+	976.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11297.0	NM_021403	58212.0	Mm.271230	NM_021403	ENSMUSG00000039860	Srrm3	2900083I11Rik|AB041661|SRm300-like|Srrm2l	serine/arginine repetitive matrix 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-193200704-4	chr1	193200215	193201215	+	976.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153137, intron 2 of 15)	intron (NM_153137, intron 2 of 15)	831.0	NM_153137	215243.0	Mm.261259	NM_153137	ENSMUSG00000037318	Traf3ip3	6030423D04Rik|AI115021|T3jam	TRAF3 interacting protein 3	protein-coding	0.0	5.0	2.5	0.0	5.0	4.5
Merged-chr10-17669624-4	chr10	17669101	17670101	+	976.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53627.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4847258-3	chr16	4846759	4847759	+	976.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030192, intron 1 of 15)	intron (NM_030192, intron 1 of 15)	11843.0	NM_030192	78809.0	Mm.325551	NM_030192	ENSMUSG00000022518	4930562C15Rik	-	RIKEN cDNA 4930562C15 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-116268078-3	chr8	116267568	116268568	+	976.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-236947.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-35063123-4	chr4	35062629	35063629	+	976.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 2 of 3)	intron (NM_178061, intron 2 of 3)	-88926.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39572353-3	chr18	39571870	39572870	+	976.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-85125.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152397156-4	chr3	152396719	152397719	+	976.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287139, intron 1 of 13)	intron (NM_001287139, intron 1 of 13)	535.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	5.5	35.0	32.0	5.5	37.5	35.5
Merged-chr10-67031391-4	chr10	67030900	67031900	+	976.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110511, intron 3 of 6)	intron (NR_110511, intron 3 of 6)	26325.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118736284-4	chr10	118735789	118736789	+	976.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	132614.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-14102063-4	chr10	14101549	14102549	+	976.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010437, intron 2 of 8)	intron (NM_010437, intron 2 of 8)	135670.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.0	4.0	0.0	0.0	2.0	4.0
Merged-chr10-98954755-4	chr10	98954132	98955132	+	976.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	39480.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29853608-4	chr7	29853100	29854100	+	976.30835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173738)	promoter-TSS (NM_173738)	48.0	NM_173738	233057.0	Mm.296864	NM_173738	ENSMUSG00000050855	Zfp940	-	zinc finger protein 940	protein-coding	7.0	37.0	27.5	19.0	30.5	20.5
Merged-chr18-34223697-6	chr18	34223206	34224206	+	976.305542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007462, intron 1 of 15)	intron (NM_007462, intron 1 of 15)	-1934.0	NR_040534	633395.0	Mm.414290	NR_040534	ENSMUSG00000073607	Gm10548	-	ribosomal protein L29 pseudogene	pseudo	17.5	49.5	52.5	27.5	51.0	46.5
Merged-chr7-84272470-4	chr7	84271985	84272985	+	976.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007488, intron 12 of 18)	intron (NM_007488, intron 12 of 18)	-120592.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30252276-4	chr16	30251765	30252765	+	976.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15267.0	NM_027904	71756.0	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88167255-4	chr4	88166707	88167707	+	976.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081184, intron 5 of 43)	intron (NM_001081184, intron 5 of 43)	45167.0	NR_030478	735282.0		NR_030478	ENSMUSG00000070077	Mir491	Mirn491|mir-491|mmu-mir-491	microRNA 491	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84974422-4	chr8	84973925	84974925	+	976.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011563, exon 6 of 6)	3' UTR (NM_011563, exon 6 of 6)	4323.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	44.0	144.0	102.5	57.0	129.5	70.0
Merged-chr4-101685348-4	chr4	101684859	101685859	+	976.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32048.0	NM_001122899	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	32.5	25.5	56.0	4.0	6.0	9.5
Merged-chr19-40401344-4	chr19	40400745	40401745	+	976.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034962, intron 2 of 22)	intron (NM_001034962, intron 2 of 22)	1065.0	NM_001034964	20411.0	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr2-119873064-8	chr2	119872481	119873481	+	976.2604369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-24247.0	NM_001164274	29808.0	Mm.87532	NM_013720	ENSMUSG00000033943	Mga	AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5	MAX gene associated	protein-coding	1.0	0.0	5.0	5.5	26.0	12.5
Merged-chr12-79319486-4	chr12	79318988	79319988	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 5 of 10)	L1MEc|LINE|L1	22137.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	8.0	13.0	16.0	18.5	10.5	13.0
Merged-chr1-74201223-4	chr1	74200727	74201727	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA9|LINE|L1	5393.0	NR_035449	100316687.0		NR_035449	ENSMUSG00000087820	Mir1928	mmu-mir-1928	microRNA 1928	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-14291452-4	chr16	14290959	14291959	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161775)	promoter-TSS (NM_001161775)	-51.0	NM_013607	17880.0	Mm.250705	NM_013607	ENSMUSG00000018830	Myh11	AV071570|SM1|SM2|smMHC	myosin, heavy polypeptide 11, smooth muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91661740-2	chr12	91661240	91662240	+	976.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	RMER4B|LTR|ERVK	-71253.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106501413-4	chr11	106500907	106501907	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_030703)	TTS (NR_030703)	416.0	NR_030703	100216537.0		NR_030703	ENSMUSG00000065126	Snord104	-	small nucleolar RNA, C/D box 104	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138012291-2	chr4	138011769	138012769	+	976.25	f0_balb.idr|f1_balb.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	14444.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	10.0	21.0	11.0	46.0	111.5	132.5
Merged-chr2-57116106-4	chr2	57115607	57116607	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139509, intron 1 of 7)	intron (NM_001139509, intron 1 of 7)	-1069.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82845903-4	chr11	82845397	82846397	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164569, intron 1 of 7)	intron (NM_001164569, intron 1 of 7)	-16854.0	NM_026097	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132121306-4	chr2	132120798	132121798	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	B3|SINE|B2	23810.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79813973-4	chr12	79813468	79814468	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009014, exon 11 of 11)	3' UTR (NM_009014, exon 11 of 11)	110765.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84313237-4	chr3	84312721	84313721	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	-8446.0	NM_001271726	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55467049-4	chr12	55466564	55467564	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25583.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-174343696-4	chr2	174343151	174344151	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077507, intron 5 of 10)	intron (NM_001077507, intron 5 of 10)	13562.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120768764-4	chr8	120768279	120769279	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30140.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94545682-4	chr10	94545186	94546186	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172051, intron 1 of 3)	intron (NM_172051, intron 1 of 3)	-5186.0	NM_001359761	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99254849-4	chr5	99254348	99255348	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1921.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136794360-3	chr6	136793834	136794834	+	976.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10097.0	NM_175652	320332.0	Mm.246720	NM_175652	ENSMUSG00000096010	Hist4h4	B130044J01Rik	histone cluster 4, H4	protein-coding	0.5	3.5	1.5	1.5	3.0	0.0
Merged-chr11-116866424-3	chr11	116865940	116866940	+	976.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178620, intron 9 of 12)	intron (NM_178620, intron 9 of 12)	12440.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	24.5	32.5	57.5	25.5	25.5	31.0
Merged-chr9-80723850-3	chr9	80723360	80724360	+	976.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-258422.0	NM_022016	63859.0	Mm.422780	NM_022016	ENSMUSG00000032343	Impg1	A930015H12Rik|IMP150|SPACR	interphotoreceptor matrix proteoglycan 1	protein-coding	0.0	0.0	3.5	0.0	0.0	1.0
Merged-chr13-67331304-4	chr13	67330801	67331801	+	976.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177622, intron 1 of 4)	ID_B1|SINE|B4	1259.0	NM_177622	218314.0	Mm.289695	NM_177622	ENSMUSG00000057842	Zfp595	A230042K10Rik|Rslcan23	zinc finger protein 595	protein-coding	8.5	31.5	12.0	13.5	35.5	15.5
Merged-chr17-70829801-4	chr17	70829318	70830318	+	976.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER45B|DNA|hAT-Tip100	16959.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-102913780-4	chr9	102913282	102914282	+	976.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	78862.0	NM_001284258	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-28963978-4	chr19	28963486	28964486	+	976.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028922)	promoter-TSS (NM_028922)	66.0	NM_028922	74411.0	Mm.441887	NM_028922	ENSMUSG00000040105	Plpp6	4932443D16Rik|Ppapdc2	phospholipid phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35333755-2	chr2	35333255	35334255	+	976.2000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_013515, intron 1 of 6)	B1_Mur4|SINE|Alu	3254.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-16638683-5	chr11	16638263	16639263	+	976.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113440.0	NM_207655	13649.0	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	10.5	8.0	9.0	4.0	4.5	11.5
Merged-chr2-152335487-4	chr2	152334987	152335987	+	976.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A2|LTR|ERVK	-2848.0	NM_019705	24105.0	Mm.182145	NM_019705	ENSMUSG00000027466	Rbck1	AL033326|HOIL-1|HOIL-1L|UIP28|Ubce7ip3	RanBP-type and C3HC4-type zinc finger containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-60589602-4	chr3	60589082	60590082	+	976.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	88403.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	35.5	53.5	37.5	9.5	49.5	36.5
Merged-chr1-24613074-3	chr1	24612573	24613573	+	976.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25636.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125116746-4	chr8	125116265	125117265	+	976.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 3 of 12)	intron (NM_174854, intron 3 of 12)	62570.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	10.0	6.0	6.0	7.0	15.0	14.0
Merged-chr9-62838050-4	chr9	62837563	62838563	+	976.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033175)	promoter-TSS (NM_001033175)	-724.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115505138-4	chr6	115504625	115505625	+	976.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39579.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-121464707-4	chr1	121464207	121465207	+	976.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029955, intron 11 of 23)	intron (NM_029955, intron 11 of 23)	33640.0	NM_029955	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	47.0	59.5	63.0	11.0	23.5	16.0
Merged-chr2-51014455-4	chr2	51013963	51014963	+	976.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	104779.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153492704-4	chr2	153492216	153493216	+	976.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134300, intron 1 of 10)	CpG	37255.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-46134818-3	chr13	46134321	46135321	+	976.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138900.0	NM_001005422	380842.0	Mm.188108	NM_001005422	ENSMUSG00000063529	Stmnd1	Gm1574	stathmin domain containing 1	protein-coding	5.5	3.5	5.0	6.0	6.5	5.5
Merged-chr7-25719490-4	chr7	25718985	25719985	+	976.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028771)	promoter-TSS (NM_028771)	-432.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-108225440-4	chr11	108224947	108225947	+	976.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	B4|SINE|B4	118441.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0.0	0.0	0.0	1.0	10.5	0.0
Merged-chr15-66969843-4	chr15	66969365	66970365	+	976.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008681)	promoter-TSS (NM_008681)	-224.0	NM_008681	17988.0	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	0.0	2.0	4.0	0.0	0.0	5.0
Merged-chr5-17821623-4	chr5	17821120	17822120	+	976.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159557, intron 4 of 15)	intron (NM_001159557, intron 4 of 15)	14276.0	NM_001159555	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96552167-4	chr15	96551673	96552673	+	976.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89789.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-48492098-4	chr9	48491593	48492593	+	976.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144948, intron 3 of 4)	intron (NM_144948, intron 3 of 4)	3237.0	NM_001326355	67010.0	Mm.76911	NM_144948	ENSMUSG00000042396	Rbm7	1200007M24Rik|1500011D06Rik|AU041934|AW554393	RNA binding motif protein 7	protein-coding	34.5	26.5	25.0	41.5	41.0	22.0
Merged-chr6-85029859-3	chr6	85029359	85030359	+	976.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 1 of 21)	intron (NM_177077, intron 1 of 21)	39654.0	NM_177077	75914.0	Mm.159621	NM_177077	ENSMUSG00000033769	Exoc6b	4930569O18Rik|G430127E12Rik|Sec15b|Sec15l2|mKIAA0919	exocyst complex component 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61911096-4	chr8	61910588	61911588	+	976.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8394.0	NM_001293772	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25016847-4	chr17	25016348	25017348	+	976.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134126, exon 1 of 30)	5' UTR (NM_134126, exon 1 of 30)	762.0	NM_134126	106633.0	Mm.32802	NM_134126	ENSMUSG00000024169	Ift140	AI661311|Tce5|Wdtc2|mKIAA0590	intraflagellar transport 140	protein-coding	159.5	365.5	189.0	201.0	324.5	239.5
Merged-chr1-9826053-4	chr1	9825535	9826535	+	976.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177547, intron 1 of 16)	intron (NM_177547, intron 1 of 16)	-22246.0	NM_001037759	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	5.0	11.0	8.0	5.0	11.0	8.0
Merged-chr4-102575321-2	chr4	102574821	102575821	+	976.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	5261.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	6.5	4.5	2.0	5.0	4.5	3.0
Merged-chr10-40499501-4	chr10	40498982	40499982	+	976.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70880.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-72809201-4	chr15	72808712	72809712	+	976.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_002864, exon 1 of 1)	non-coding (NR_002864, exon 1 of 1)	1112.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	13.0	60.0	59.0	0.0	0.0	7.0
Merged-chr2-58184330-4	chr2	58183812	58184812	+	976.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20338.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130291658-4	chr2	130291143	130292143	+	976.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4296.0	NM_001110513	228598.0	Mm.32582	NM_152993	ENSMUSG00000053552	Ebf4	Ebf3|O/E-4|Olf-1	early B cell factor 4	protein-coding	6.0	4.5	4.5	5.0	2.0	2.5
Merged-chr9-122886902-4	chr9	122886416	122887416	+	976.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1555.0	NM_001177505	382118.0	Mm.86999	NM_001177505	ENSMUSG00000063488	Zkscan7	BC042569|Zfp167	zinc finger with KRAB and SCAN domains 7	protein-coding	23.5	78.5	53.0	29.5	58.0	28.0
Merged-chr19-24967173-4	chr19	24966661	24967661	+	976.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5545.0	NM_146097	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	85.0	214.5	157.5	109.5	237.0	156.5
Merged-chr2-155107461-4	chr2	155106948	155107948	+	976.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-7369.0	NR_040634	100504268.0	Mm.410858	NR_040634	ENSMUSG00000087254	2310005A03Rik	-	RIKEN cDNA 2310005A03 gene	ncRNA	9.5	58.5	13.5	16.5	47.0	21.0
Merged-chr9-44076908-4	chr9	44076395	44077395	+	976.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198092, intron 2 of 12)	intron (NM_198092, intron 2 of 12)	7466.0	NM_016808	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135192083-4	chr3	135191575	135192575	+	976.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20488.0	NM_173762	229841.0	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-140863702-4	chr2	140863191	140864191	+	976.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 4 of 18)	intron (NM_001013802, intron 4 of 18)	-192215.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160627362-4	chr2	160626959	160627959	+	976.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18438.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130921408-6	chr4	130920905	130921905	+	976.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	8071.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171102675-10	chr1	171102170	171103170	+	976.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-18991.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	13.0	47.5	19.0	5.0	17.5	4.5
Merged-chr17-34931941-3	chr17	34931371	34932371	+	976.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010893, intron 1 of 5)	intron (NM_010893, intron 1 of 5)	618.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71866771-3	chr2	71866264	71867264	+	976.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 3 of 3).2	intron (NR_039557, intron 3 of 3).2	-6460.0	NM_172665	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	51.0	42.5	60.5	7.5	19.5	4.5
Merged-chr17-28510629-4	chr17	28510145	28511145	+	976.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20216.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103033014-4	chr11	103032557	103033557	+	976.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008707, intron 1 of 11)	intron (NM_008707, intron 1 of 11)	4514.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-50657524-4	chr10	50657025	50658025	+	976.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 11 of 41)	intron (NM_198007, intron 11 of 41)	64856.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-89458081-4	chr4	89457595	89458595	+	976.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132431, intron 7 of 9)	intron (NR_132431, intron 7 of 9)	-147063.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69607070-4	chr3	69606586	69607586	+	976.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8126.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	44.5	147.0	105.0	67.0	153.0	73.0
Merged-chr5-53929672-4	chr5	53929153	53930153	+	976.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68870.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39613175-4	chr10	39612727	39613727	+	976.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134000, exon 1 of 9)	5' UTR (NM_134000, exon 1 of 9)	293.0	NM_134000	103213.0	Mm.436686	NM_134000	ENSMUSG00000019842	Traf3ip2	AI429613|Act1|CIKS	TRAF3 interacting protein 2	protein-coding	0.0	4.5	1.5	0.0	4.5	1.5
Merged-chr2-152789683-4	chr2	152789175	152790175	+	976.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	35502.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50869673-4	chr15	50869174	50870174	+	976.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032000, intron 1 of 5)	CpG	19375.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	40.0	80.0	89.0	29.5	152.0	85.5
Merged-chr16-33414410-4	chr16	33413886	33414886	+	976.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358569, intron 1 of 8)	B3A|SINE|B2	13941.0	NM_001358569	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-86894666-4	chr3	86894168	86895168	+	976.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195500, intron 2 of 11)	intron (NM_001195500, intron 2 of 11)	26216.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	2.5	0.5	0.5	3.5	0.5	2.0
Merged-chr1-172426976-4	chr1	172426479	172427479	+	976.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-48381.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	3.0	0.5	4.0	9.5	7.5	6.0
Merged-chr5-134102086-4	chr5	134101604	134102604	+	976.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030719, intron 1 of 8)	intron (NM_030719, intron 1 of 8)	2356.0	NM_030719	80909.0	Mm.45218	NM_030719	ENSMUSG00000015944	Gatsl2	7530428J21Rik|AW742413|Castor2|Gats|Gatsl1	GATS protein-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-44076192-4	chr17	44075698	44076698	+	976.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-2604.0	NM_001168620	83965.0	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	14.0	12.5	12.5	7.5	16.0	7.5
Merged-chr5-134531843-4	chr5	134531348	134532348	+	976.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039162, intron 2 of 15)	intron (NM_001039162, intron 2 of 15)	20586.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11126730-2	chr4	11126230	11127230	+	976.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151526, exon 3 of 3)	non-coding (NR_151526, exon 3 of 3)	2772.0	NR_151526	100503518.0	Mm.102270	NR_151526	ENSMUSG00000086765	Gm11827	-	predicted gene 11827	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76945638-4	chr11	76945090	76946090	+	976.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178645)	promoter-TSS (NM_178645)	-66.0	NM_178645	104184.0	Mm.399785	NM_178645	ENSMUSG00000020840	Blmh	AI035728|Bh|Bmh	bleomycin hydrolase	protein-coding	5.5	21.0	20.5	18.5	35.5	23.5
Merged-chr1-183439220-3	chr1	183438729	183439729	+	976.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19981.0	NM_001308052	78772.0	Mm.29003	NM_030175	ENSMUSG00000053461	Hhipl2	4930507C10Rik|AW208802|Hhip3	hedgehog interacting protein-like 2	protein-coding	0.0	0.0	0.0	4.0	0.0	0.0
Merged-chr3-46450410-2	chr3	46449910	46450910	+	976.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-2469.0	NM_001101479	241989.0	Mm.119234	NM_001101479	ENSMUSG00000090919	Pabpc4l	C330050A14Rik|EG241989	poly(A) binding protein, cytoplasmic 4-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97214310-2	chr15	97213810	97214810	+	976.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-32797.0	NM_172293	239647.0	Mm.130036	NM_172293	ENSMUSG00000044250	Pced1b	Fam113b	PC-esterase domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24881890-2	chr17	24881390	24882390	+	976.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001355396)	TTS (NM_001355396)	3120.0	NM_008340	16005.0	Mm.3135	NM_008340	ENSMUSG00000046070	Igfals	ALS|Albs|mKIAA4111	insulin-like growth factor binding protein, acid labile subunit	protein-coding	0.0	0.5	4.0	0.5	0.0	0.0
Merged-chr11-77410074-4	chr11	77409566	77410566	+	976.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291190, intron 4 of 13)	intron (NM_001291190, intron 4 of 13)	-53847.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95700514-3	chr9	95700019	95701019	+	976.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	49839.0	NM_001311123	22063.0	Mm.149633	NM_011643	ENSMUSG00000032839	Trpc1	Mtrp1|Trp1|Trrp1	transient receptor potential cation channel, subfamily C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-21217562-2	chr1	21217062	21218062	+	976.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1013.0	NM_001290679	75712.0	Mm.304763	NM_029398	ENSMUSG00000025933	Tmem14a	5730496E24Rik|C85783|PTD011	transmembrane protein 14A	protein-coding	0.5	0.5	0.0	0.5	0.5	0.0
Merged-chr3-137853463-4	chr3	137852974	137853974	+	976.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-11013.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	1.0	18.0	8.0	0.0	0.0	0.5
Merged-chr1-34441330-2	chr1	34440830	34441830	+	976.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178601, intron 2 of 8)	B3A|SINE|B2	1501.0	NM_178601	27993.0	Mm.289667	NM_178601	ENSMUSG00000026127	Imp4	AA409888|AV031295|D1Wsu40e	IMP4, U3 small nucleolar ribonucleoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17811226-4	chr6	17810747	17811747	+	976.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	RLTR40|LTR|ERVK	62077.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134558045-3	chr4	134557513	134558513	+	976.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5847.0	NM_029100	74777.0	Mm.29773	NM_029100	ENSMUSG00000050989	Selenon	1110019I12Rik|AI414492|SelN|Sepn1	selenoprotein N	protein-coding	1.5	18.0	4.0	15.0	4.5	8.0
Merged-chr6-118134867-3	chr6	118134388	118135388	+	976.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030165, intron 1 of 7)	intron (NM_030165, intron 1 of 7)	3942.0	NM_001362149	78752.0	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25010481-2	chr7	25009981	25010981	+	976.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008168, exon 20 of 20)	exon (NM_008168, exon 20 of 20)	-4544.0	NM_001290469	232975.0	Mm.44101	NM_144921	ENSMUSG00000040907	Atp1a3	Atpa-2	ATPase, Na+/K+ transporting, alpha 3 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-8095563-4	chr14	8095069	8096069	+	976.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2642.0	NM_145458	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-194985999-4	chr1	194985501	194986501	+	976.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-9042.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61450902-2	chr10	61450402	61451402	+	976.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010124, intron 1 of 2)	intron (NM_010124, intron 1 of 2)	1767.0	NM_010124	13688.0	Mm.259516	NM_010124	ENSMUSG00000020091	Eif4ebp2	2810011I19Rik|4E-BP2|AA792569|BC010348|PHAS-II	eukaryotic translation initiation factor 4E binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150891480-4	chr4	150890980	150891980	+	976.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	18441.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100016427-2	chr13	100015927	100016927	+	976.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030026)	promoter-TSS (NM_030026)	-788.0	NM_030026	78038.0	Mm.137327	NM_030026	ENSMUSG00000021646	Mccc2	4930552N12Rik|MCCB	methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65532152-2	chr9	65531652	65532652	+	976.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	47935.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88700504-7	chr1	88699988	88700988	+	976.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177305, exon 1 of 1)	3' UTR (NM_177305, exon 1 of 1)	1703.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58528805-2	chr15	58528305	58529305	+	976.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	113337.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	0.0	0.0	0.0	4.5	0.0	0.0
Merged-chr13-14061057-2	chr13	14060557	14061557	+	976.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331178, intron 1 of 4)	Lx3B|LINE|L1	2431.0	NM_001331119	14593.0	Mm.148039	NM_010282	ENSMUSG00000021302	Ggps1	1810026C22Rik|9530089B04Rik|AI843169|C79210	geranylgeranyl diphosphate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103217871-4	chr11	103217353	103218353	+	976.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177801, intron 1 of 4)	(CACCG)n|Simple_repeat|Simple_repeat	579.0	NM_177801	328019.0	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-53626323-4	chr8	53625857	53626857	+	975.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146208, intron 1 of 9)	intron (NM_146208, intron 1 of 9)	12708.0	NM_146208	234258.0	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-110599785-4	chr13	110599291	110600291	+	975.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	204747.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-23006426-4	chr2	23005917	23006917	+	975.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	Lx8|LINE|L1	33824.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134418670-4	chr1	134418161	134419161	+	975.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001306069, intron 1 of 7)	intron (NM_001306069, intron 1 of 7)	2997.0	NM_001306069	72674.0	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70753720-4	chr17	70753229	70754229	+	975.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	93048.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13964674-4	chr8	13964173	13965173	+	975.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361630, intron 2 of 3)	intron (NM_001361630, intron 2 of 3)	10104.0	NM_173744	72148.0	Mm.5727	NM_173744	ENSMUSG00000050052	Tdrp	2610019F03Rik	testis development related protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32268865-4	chr17	32268367	32269367	+	975.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286630, intron 1 of 19)	intron (NM_001286630, intron 1 of 19)	15256.0	NM_198094	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-36547480-4	chr13	36546979	36547979	+	975.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	186998.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	12.5	19.0	28.5	11.5	18.5	18.0
Merged-chr7-68130104-4	chr7	68129601	68130601	+	975.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	134132.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76529887-4	chr11	76529382	76530382	+	975.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198894, intron 1 of 22)	intron (NM_198894, intron 1 of 22)	-20463.0	NM_198018	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-118381534-4	chr5	118381010	118382010	+	975.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136283.0	NM_001081236	76792.0	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72402051-4	chr6	72401554	72402554	+	975.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-11387.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66079541-4	chr5	66079023	66080023	+	975.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	18656.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	15.0	13.5	6.0	8.5	2.0	9.5
Merged-chr13-30987105-4	chr13	30986608	30987608	+	975.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13061.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44416198-3	chr13	44415689	44416689	+	975.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23538.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	29.5	92.0	52.0	31.5	116.0	65.0
Merged-chr9-55310366-4	chr9	55309850	55310850	+	975.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16563.0	NM_172923	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9707623-4	chr18	9707123	9708123	+	975.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130449)	promoter-TSS (NM_130449)	-25.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	9.0	12.0	15.0	15.0	44.5	19.0
Merged-chr14-45291842-4	chr14	45291321	45292321	+	975.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015774, intron 13 of 15)	intron (NM_015774, intron 13 of 15)	26751.0	NM_015774	50527.0	Mm.387108	NM_015774	ENSMUSG00000021831	Ero1l	ERO1-L|Ero1a	ERO1-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-51552684-2	chr5	51552184	51553184	+	975.916626	f1_balb.idr|f1_c57bl6.idr	intron (NR_132764, intron 1 of 12)	intron (NR_132764, intron 1 of 12)	1237.0	NR_027710	19017.0	Mm.259072	NM_008904	ENSMUSG00000029167	Ppargc1a	A830037N07Rik|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	protein-coding	0.0	11.5	8.0	4.0	10.5	2.5
Merged-chr15-53416450-4	chr15	53415923	53416923	+	975.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-70240.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-40862456-5	chr8	40862012	40863012	+	975.900024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001044740, exon 1 of 12)	5' UTR (NM_001044740, exon 1 of 12)	145.0	NM_001044740	11988.0	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.5	1.0	6.0	0.0	0.0	0.0
Merged-chr10-62945339-4	chr10	62944830	62945830	+	975.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175194, exon 9 of 9)	3' UTR (NM_175194, exon 9 of 9)	-1699.0	NR_152862	327762.0	Mm.21492	NM_177372	ENSMUSG00000036875	Dna2	Dna2l|E130315B21Rik	DNA replication helicase/nuclease 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139575448-4	chr4	139575031	139576031	+	975.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001205173, exon 1 of 9)	exon (NM_001205173, exon 1 of 9)	811.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	25.5	15.0	9.5	6.5	0.0	2.5
Merged-chr3-96227582-4	chr3	96227081	96228081	+	975.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR18D_MM|LTR|ERVK	6509.0	NM_178214	319190.0	Mm.439791	NM_178214	ENSMUSG00000068854	Hist2h2be	AV127319|H2b-613|T25626	histone cluster 2, H2be	protein-coding	0.0	1.5	0.0	2.5	0.0	0.5
Merged-chr17-36951150-4	chr17	36950644	36951644	+	975.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029632, intron 1 of 2)	intron (NM_029632, intron 1 of 2)	648.0	NM_029632	76497.0	Mm.46176	NM_029632	ENSMUSG00000036398	Ppp1r11	1500041B02Rik|AV117883|Hcgv|Tcte5|Tctex-5|Tctex5	protein phosphatase 1, regulatory (inhibitor) subunit 11	protein-coding	52.5	112.0	117.0	24.0	155.5	129.5
Merged-chr5-92363343-3	chr5	92362834	92363834	+	975.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038116)	promoter-TSS (NR_038116)	-38.0	NR_038116	56066.0	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	1.5	0.5	1.5	0.0	2.0	6.5
Merged-chr3-152568889-3	chr3	152568405	152569405	+	975.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355635, intron 6 of 8)	intron (NM_001355635, intron 6 of 8)	-98008.0	NR_040386	99542.0	Mm.394921	NR_040386	ENSMUSG00000097745	AI115009	-	expressed sequence AI115009	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-79936707-4	chr7	79936209	79937209	+	975.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1445.0	NM_027420	70420.0	Mm.34266	NM_027420	ENSMUSG00000039043	Arpin	2610034B18Rik	actin-related protein 2/3 complex inhibitor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-37412971-4	chr4	37412470	37413470	+	975.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	163567.0	NR_151605	102636890.0	Mm.109154	NR_151605	ENSMUSG00000086026	Gm12374	-	predicted gene 12374	ncRNA	8.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120527698-4	chr5	120527198	120528198	+	975.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 11 of 13)	intron (NM_001177595, intron 11 of 13)	16506.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	1.0	3.0	0.5	0.5	3.0	3.5
Merged-chr2-127832331-4	chr2	127831840	127832840	+	975.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113179)	promoter-TSS (NM_001113179)	-481.0	NM_009772	12235.0	Mm.2185	NM_009772	ENSMUSG00000027379	Bub1	AL022991|Bub1a|C80208|D2Xrf87	BUB1, mitotic checkpoint serine/threonine kinase	protein-coding	5.0	1.5	4.0	5.0	2.5	5.0
Merged-chr9-50552405-4	chr9	50551896	50552896	+	975.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133217, intron 1 of 11)	intron (NM_133217, intron 1 of 11)	1266.0	NM_001359610	170752.0	Mm.390149	NM_133217	ENSMUSG00000032066	Bco2	B-diox-II|Bcdo2|Bcmo2|CMO2	beta-carotene oxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-86887043-4	chr10	86886519	86887519	+	975.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 42 of 68)	intron (NM_138673, intron 42 of 68)	108014.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38297466-4	chr18	38296955	38297955	+	975.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164621, intron 1 of 9)	MIR|SINE|MIR	650.0	NM_001164621	56736.0	Mm.228903	NM_020012	ENSMUSG00000060450	Rnf14	2310075C09Rik|2610005D23Rik|AA986456|AU041447|D18Ertd188e|D7Bwg0165e|Triad2	ring finger protein 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132809872-4	chr4	132809325	132810325	+	975.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13461.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-48504359-4	chr6	48503852	48504852	+	975.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015597)	promoter-TSS (NR_015597)	13.0	NR_027808	58894.0	Mm.31983	NR_015597	ENSMUSG00000107476	Zfp862-ps	4732460K03Rik|AI448302|Zfp862|mKIAA0543	zinc finger protein 862, pseudogene	pseudo	24.5	33.5	32.5	13.5	10.5	13.5
Merged-chr9-55255184-4	chr9	55254679	55255679	+	975.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	LTR37-int|LTR|ERV1	28446.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149628496-2	chr4	149627961	149628961	+	975.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_023051, intron 4 of 18)	intron (NM_023051, intron 4 of 18)	27106.0	NR_105990	102465983.0		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53160897-2	chr4	53160397	53161397	+	975.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1002.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23807138-2	chr17	23806638	23807638	+	975.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175229, intron 1 of 13)	CpG	3951.0	NM_175229	75956.0	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	0.5	6.0	9.5	7.0	5.0	6.0
Merged-chr9-44361247-2	chr9	44360700	44361700	+	975.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027889, intron 1 of 15)	intron (NM_027889, intron 1 of 15)	470.0	NM_001357393	71732.0	Mm.295013	NM_027889	ENSMUSG00000032127	Vps11	1200011A11Rik	VPS11, CORVET/HOPS core subunit	protein-coding	14.0	28.0	20.0	12.5	33.0	23.5
Merged-chr2-75725097-4	chr2	75724611	75725611	+	975.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20448.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	5.5	24.5	5.0	4.5	33.5	9.5
Merged-chr12-100480187-2	chr12	100479687	100480687	+	975.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 3 of 19)	intron (NM_001033213, intron 3 of 19)	40635.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163713399-4	chr2	163712887	163713887	+	975.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 3 of 4)	intron (NM_001039390, intron 3 of 4)	19350.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-97662491-4	chr1	97661979	97662979	+	975.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133825)	promoter-TSS (NM_133825)	-461.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30942788-4	chr2	30942269	30943269	+	975.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10232.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	16.5	17.0	20.0	13.0	21.0	24.5
Merged-chr9-31248023-4	chr9	31247512	31248512	+	975.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23389.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83879535-4	chr7	83879028	83880028	+	975.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030705)	TTS (NM_030705)	4813.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	30.0	121.0	72.0	67.5	92.5	91.0
Merged-chr19-11818854-3	chr19	11818369	11819369	+	975.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153434, exon 1 of 12)	non-coding (NR_153434, exon 1 of 12)	534.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	86.0	277.0	174.5	83.5	270.5	180.5
Merged-chr13-95685921-3	chr13	95685430	95686430	+	975.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 14 of 35)	intron (NM_027711, intron 14 of 35)	-10990.0	NM_010170	14064.0	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	0.0	4.0	2.0	5.0	5.0	3.5
Merged-chr9-31446125-3	chr9	31445629	31446629	+	975.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144936, intron 1 of 5)	intron (NM_144936, intron 1 of 5)	18109.0	NM_144936	235135.0	Mm.390134	NM_144936	ENSMUSG00000041737	Tmem45b	BC018222	transmembrane protein 45b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53563098-4	chr15	53562570	53563570	+	975.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	51209.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43801639-4	chr19	43801135	43802135	+	975.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013806, intron 7 of 31)	intron (NM_013806, intron 7 of 31)	19327.0	NM_013806	12780.0	Mm.39054	NM_013806	ENSMUSG00000025194	Abcc2	AI173996|Abc30|Cmoat|Mrp2|cMRP	ATP-binding cassette, sub-family C (CFTR/MRP), member 2	protein-coding	0.0	4.5	2.5	2.0	3.0	2.5
Merged-chr19-42072359-3	chr19	42071857	42072857	+	975.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	14013.0	NM_198108	226123.0	Mm.259441	NM_198108	ENSMUSG00000049670	Morn4	-	MORN repeat containing 4	protein-coding	5.0	6.0	7.0	16.5	35.5	19.0
Merged-chr6-124759488-4	chr6	124759008	124760008	+	975.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001302642)	TTS (NM_001302642)	-3021.0	NM_007881	13498.0	Mm.333380	NM_007881	ENSMUSG00000004263	Atn1	Atr1|Drpla|atrophin-1	atrophin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180273011-3	chr2	180272492	180273492	+	975.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145851, intron 1 of 9)	intron (NM_145851, intron 1 of 9)	473.0	NM_145851	252966.0	Mm.386884	NM_145851	ENSMUSG00000038990	Cables2	ik3-2	CDK5 and Abl enzyme substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98897724-4	chr10	98897216	98898216	+	975.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16926.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-119395741-6	chr6	119395222	119396222	+	975.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197985, intron 1 of 7)	intron (NM_197985, intron 1 of 7)	-6988.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0.0	0.0	0.0	1.0	0.0	1.0
Merged-chr17-25678158-4	chr17	25677744	25678744	+	975.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38928.0	NM_022422	64337.0	Mm.171123	NM_022422	ENSMUSG00000025739	Gng13	1500031D04Rik|AB030194|Ggamma13	guanine nucleotide binding protein (G protein), gamma 13	protein-coding	24.0	64.5	64.0	54.5	49.0	54.5
Merged-chr7-63929313-4	chr7	63928769	63929769	+	975.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	9646.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	6.0	29.0	15.0	6.5	15.0	15.0
Merged-chr12-84876974-4	chr12	84876479	84877479	+	975.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013589)	promoter-TSS (NM_013589)	-484.0	NM_013589	16997.0	Mm.3900	NM_013589	ENSMUSG00000002020	Ltbp2	AW208642	latent transforming growth factor beta binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38927315-4	chr2	38926797	38927797	+	975.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010264)	promoter-TSS (NM_010264)	-836.0	NM_010264	14536.0	Mm.439703	NM_010264	ENSMUSG00000063972	Nr6a1	1700113M01Rik|Gcnf|NCNF|RTR	nuclear receptor subfamily 6, group A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150625582-4	chr4	150625082	150626082	+	975.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26592.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	7.0	0.0	0.0	4.0	0.0	1.0
Merged-chr1-181014908-4	chr1	181014428	181015428	+	975.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010145, intron 1 of 8)	intron (NM_010145, intron 1 of 8)	2641.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-92861627-3	chr13	92861111	92862111	+	975.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16824.0	NM_001162945	382793.0	Mm.296770	NM_001162945	ENSMUSG00000021704	Mtx3	4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514	metaxin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11239732-3	chr2	11239232	11240232	+	975.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 4 of 17)	intron (NM_008859, intron 4 of 17)	67350.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90589573-4	chr2	90589056	90590056	+	975.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8909.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5870054-4	chr13	5869551	5870551	+	975.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011803, exon 4 of 4)	3' UTR (NM_011803, exon 4 of 4)	8562.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3236859-4	chr12	3236351	3237351	+	975.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015551, intron 1 of 6)	intron (NR_015551, intron 1 of 6)	1060.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12114696-2	chr15	12114196	12115196	+	975.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-3155.0	NM_011767	22763.0	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-142508025-4	chr6	142507551	142508551	+	975.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302765)	promoter-TSS (NM_001302765)	-94.0	NM_001316322	16832.0	Mm.9745	NM_008492	ENSMUSG00000030246	Ldhb	AI790582|H-Ldh|LDH-B|LDH-H|Ldh-2|Ldh2	lactate dehydrogenase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97664251-2	chr11	97663751	97664751	+	975.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_139311, intron 1 of 19)	intron (NM_139311, intron 1 of 19)	839.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111446115-2	chr12	111445615	111446615	+	975.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_009396, exon 3 of 12)	exon (NM_009396, exon 3 of 12)	3454.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119616727-2	chr13	119616227	119617227	+	975.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7092.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-13356186-4	chr14	13355684	13356684	+	975.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028052, intron 2 of 5)	intron (NM_028052, intron 2 of 5)	71404.0	NM_028052	72003.0	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-74246369-2	chr13	74245869	74246869	+	975.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317351, intron 3 of 9)	intron (NM_001317351, intron 3 of 9)	-37669.0	NM_177333	211446.0	Mm.261859	NM_177333	ENSMUSG00000034152	Exoc3	2810050O03Rik|E430013E20Rik|Sec6|Sec6l1	exocyst complex component 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-82924801-4	chr1	82924293	82925293	+	975.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85333.0	NM_001347077	15463.0	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60259861-4	chr10	60259368	60260368	+	975.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17760.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-85506928-4	chr13	85506481	85507481	+	975.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-217495.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100531072-4	chr12	100530555	100531555	+	975.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-10233.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92870390-4	chr16	92869904	92870904	+	975.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44330.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37776932-4	chr13	37776438	37777438	+	975.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49100.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-72462045-4	chr12	72461558	72462558	+	975.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030070, intron 10 of 24)	intron (NM_030070, intron 10 of 24)	19809.0	NM_001142729	78257.0	Mm.266280	NM_030070	ENSMUSG00000021090	Lrrc9	4921529O18Rik|4930432K16Rik	leucine rich repeat containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101213760-4	chr4	101213243	101214243	+	975.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 1 of 24)	MIR|SINE|MIR	51539.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-65458445-4	chr16	65457989	65458989	+	975.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-62140.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	0.0	0.5	1.0	0.0	0.0	1.0
Merged-chr9-100400559-4	chr9	100400073	100401073	+	975.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85900.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	4.0	9.0	5.5	15.5	2.0	0.5
Merged-chr11-117344562-3	chr11	117344067	117345067	+	975.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113488, intron 1 of 9)	intron (NM_001113488, intron 1 of 9)	12254.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-25058031-4	chr19	25057534	25058534	+	975.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 2 of 47)	intron (NM_028785, intron 2 of 47)	58505.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	19.5	12.0	26.5	6.5	19.0	30.5
Merged-chr2-152737022-3	chr2	152736509	152737509	+	975.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010495, exon 2 of 2)	exon (NM_010495, exon 2 of 2)	758.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	43.0	104.5	70.0	43.5	92.0	60.0
Merged-chr5-32996022-3	chr5	32995524	32996524	+	975.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22792.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	10.0	12.5	8.5	13.5	15.5	10.0
Merged-chr9-42944744-6	chr9	42944260	42945260	+	975.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175481)	promoter-TSS (NM_175481)	-389.0	NM_175481	110637.0	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-85645371-2	chr15	85644871	85645871	+	975.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58402.0	NR_110483	102800312.0	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5509980-2	chr11	5509482	5510482	+	975.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10659.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	56.5	87.5	77.0	14.5	30.0	16.0
Merged-chr15-73513019-2	chr15	73512519	73513519	+	975.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_152151, intron 1 of 23)	intron (NR_152151, intron 1 of 23)	459.0	NM_001081066	105841.0	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84999646-4	chr2	84999171	85000171	+	975.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145526, exon 11 of 12)	exon (NM_145526, exon 11 of 12)	11456.0	NM_016914	53856.0	Mm.19943	NM_016914	ENSMUSG00000027072	Prg3	MBP2|MBPH	proteoglycan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40504204-4	chr12	40503699	40504699	+	975.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	L1M2|LINE|L1	58146.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-116433906-4	chr12	116433388	116434388	+	975.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133762, intron 16 of 28)	intron (NM_133762, intron 16 of 28)	28486.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	66.0	127.5	127.0	2.0	11.5	13.0
Merged-chr16-30188204-4	chr16	30187695	30188695	+	975.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79337.0	NM_027904	71756.0	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44598882-4	chr10	44598401	44599401	+	975.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140153.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118506213-4	chr9	118505712	118506712	+	975.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018748)	promoter-TSS (NM_018748)	-106.0	NM_018748	54214.0	Mm.10409	NM_018748	ENSMUSG00000038708	Golga4	AI225887|AU019508|Olp-1	golgi autoantigen, golgin subfamily a, 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101937380-2	chr5	101936880	101937880	+	975.625	f1_balb.idr|f1_c57bl6.idr	exon (NM_172882, exon 14 of 67)	exon (NM_172882, exon 14 of 67)	132541.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38131264-3	chr16	38130760	38131760	+	975.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 1 of 11)	MLT1D|LTR|ERVL-MaLR	-42000.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	47.5	108.5	64.5	39.0	122.5	99.5
Merged-chr11-32650548-4	chr11	32650048	32651048	+	975.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271349, intron 1 of 11)	intron (NM_001271349, intron 1 of 11)	7993.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	15.5	11.5	19.0	7.0	18.5	10.0
Merged-chr11-74491330-4	chr11	74490832	74491832	+	975.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	MIRb|SINE|MIR	98826.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35201207-4	chr17	35200724	35201724	+	975.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013693, intron 1 of 3)	intron (NM_013693, intron 1 of 3)	783.0	NM_013693	21926.0	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	45.5	164.0	98.5	35.0	186.5	94.5
Merged-chr2-26133091-4	chr2	26132560	26133560	+	975.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6483.0	NM_001256522	109299.0	Mm.389259	NM_001256521		Tmem250-ps	AI551216|C330006A16Rik	transmembrane protein 250, pseudogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113680198-4	chr6	113679722	113680722	+	975.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 8 of 11)	intron (NM_001113553, intron 8 of 11)	-16828.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44721423-4	chr9	44720920	44721920	+	975.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153537, intron 4 of 21)	CpG	13778.0	NM_153537	102693.0	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-126702180-4	chr6	126701678	126702678	+	975.5750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38496.0	NM_013568	16494.0	Mm.62535	NM_013568	ENSMUSG00000038077	Kcna6	Kv1.6|MK1.6	potassium voltage-gated channel, shaker-related, subfamily, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66102985-4	chr5	66102479	66103479	+	975.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	B4|SINE|B4	-4800.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-82866512-4	chr10	82866026	82867026	+	975.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025499)	promoter-TSS (NM_025499)	-100.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98334155-4	chr7	98333670	98334670	+	975.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12962.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-51408551-4	chr17	51408045	51409045	+	975.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037268, intron 3 of 4)	intron (NR_037268, intron 3 of 4)	39724.0	NR_046166	328837.0	Mm.236143	NR_046166		C330011F03Rik	C330011F03	RIKEN cDNA C330011F03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-22817749-4	chr17	22817176	22818176	+	975.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030709)	promoter-TSS (NR_030709)	71.0	NR_030709	100042679.0	Mm.484007	NR_030709		Gm16386	EG545191|Gm21017	zinc finger protein 946 pseudogene	pseudo	7.0	22.5	11.5	7.0	15.5	30.5
Merged-chr15-36695742-4	chr15	36695236	36696236	+	975.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-86763.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106815600-4	chr11	106815082	106816082	+	975.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177088, exon 15 of 20)	exon (NM_177088, exon 15 of 20)	26330.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	1.0	1.5	0.5	2.0	1.0	0.0
Merged-chr6-35236573-4	chr6	35236077	35237077	+	975.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027513, intron 34 of 42)	intron (NM_027513, intron 34 of 42)	-16122.0	NR_015608	67705.0	Mm.228046	NR_015608	ENSMUSG00000073155	1810058I24Rik	AI414869|AI848234	RIKEN cDNA 1810058I24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10489269-4	chr16	10488782	10489782	+	975.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243761)	promoter-TSS (NM_001243761)	-499.0	NM_001243761	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66907721-3	chr9	66907223	66908223	+	975.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	11982.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101412079-3	chr7	101411520	101412520	+	975.5277710000001	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027180, exon 30 of 30)	3' UTR (NM_027180, exon 30 of 30)	-9671.0	NM_001008548	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	0.0	0.0	1.0	2.5	3.5	2.0
Merged-chr2-68873912-4	chr2	68873401	68874401	+	975.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	intron (NM_001347161, intron 1 of 10)	12460.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81264729-5	chr13	81264236	81265236	+	975.5200199999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 85 of 89)	L1PB4|LINE|L1	300662.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-8462007-4	chr8	8461520	8462520	+	975.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	198753.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106133376-2	chr8	106132876	106133876	+	975.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176838, intron 9 of 14)	intron (NM_176838, intron 9 of 14)	-2024.0	NR_040345	69771.0	Mm.393274	NR_040344		1810019D21Rik	-	RIKEN cDNA 1810019D21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112353647-2	chr13	112353147	112354147	+	975.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168403, intron 7 of 11)	intron (NM_001168403, intron 7 of 11)	65129.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	7.5	0.0	0.0	2.5	0.5	1.0
Merged-chr2-167352174-2	chr2	167351674	167352674	+	975.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12C|LTR|ERVK	-2996.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106058069-2	chr8	106057569	106058569	+	975.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1534.0	NM_010901	18021.0	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-15972984-2	chr7	15972484	15973484	+	975.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081418, intron 13 of 13)	intron (NM_001081418, intron 13 of 13)	-5449.0	NM_153068	259300.0	Mm.138215	NM_153068	ENSMUSG00000074364	Ehd2	BC027084|C130052H20Rik	EH-domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85491307-2	chr12	85490807	85491807	+	975.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17417.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-18197411-4	chr10	18196878	18197878	+	975.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195036, intron 3 of 20)	intron (NM_001195036, intron 3 of 20)	13512.0	NM_001195036	100045792.0	Mm.380617	NM_001195036	ENSMUSG00000071392	Ect2l	C330021H03Rik|Gm10331	epithelial cell transforming sequence 2 oncogene-like	protein-coding	6.0	1.5	0.0	5.0	5.5	0.0
Merged-chr12-41347586-2	chr12	41347086	41348086	+	975.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	RMER1B|Other|Other	138471.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-15956378-2	chr4	15955878	15956878	+	975.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1589.0	NM_013752	27354.0	Mm.20866	NM_013752	ENSMUSG00000028224	Nbn	Nbs1	nibrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6257765-2	chr19	6257265	6258265	+	975.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_194348, intron 31 of 39)	intron (NM_194348, intron 31 of 39)	-6878.0	NR_029830	723957.0		NR_029830	ENSMUSG00000065582	Mir194-2	Mirn194-2|mir-194-2	microRNA 194-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114691499-2	chr5	114691001	114692001	+	975.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019821)	promoter-TSS (NM_019821)	-566.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	0.5	17.0	7.0	0.5	17.0	1.5
Merged-chr8-4292839-2	chr8	4292339	4293339	+	975.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010485, intron 5 of 5)	intron (NM_010485, intron 5 of 5)	-16934.0	NM_011592	21856.0	Mm.195249	NM_011592	ENSMUSG00000002949	Timm44	0710005E20Rik|D8Ertd118e|Mimt44|Tim44	translocase of inner mitochondrial membrane 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109665920-6	chr4	109665413	109666413	+	975.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007671)	promoter-TSS (NM_007671)	-541.0	NM_007671	12580.0	Mm.1912	NM_007671	ENSMUSG00000028551	Cdkn2c	C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c	cyclin dependent kinase inhibitor 2C	protein-coding	1.5	15.0	10.0	10.0	29.0	8.0
Merged-chr11-121738726-2	chr11	121738226	121739226	+	975.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36299.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35254040-2	chr17	35253540	35254540	+	975.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001252457)	TTS (NM_001252457)	2751.0	NR_106169	102465886.0		NR_106169	ENSMUSG00000098269	Mir8094	Gm27513|mmu-mir-8094	microRNA 8094	ncRNA	0.0	1.0	0.0	0.0	0.5	1.0
Merged-chr7-67374649-2	chr7	67374149	67375149	+	975.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1791.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81511845-3	chr15	81511294	81512294	+	975.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45478.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75911876-2	chr15	75911376	75912376	+	975.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178646, exon 1 of 1)	3' UTR (NM_178646, exon 1 of 1)	2141.0	NM_178646	105734.0	Mm.275583	NM_178646	ENSMUSG00000103906	Tigd5	AA409802|AA409995|AI666797	tigger transposable element derived 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43866036-2	chr13	43865536	43866536	+	975.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80924.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-5299877-2	chr9	5299377	5300377	+	975.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009807, intron 3 of 9)	intron (NM_009807, intron 3 of 9)	1360.0	NM_009807	12362.0	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-130821891-2	chr7	130821391	130822391	+	975.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081038, intron 14 of 15)	intron (NM_001081038, intron 14 of 15)	-43833.0	NM_133942	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83534393-2	chr11	83533893	83534893	+	975.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-3875.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57219458-2	chr16	57218958	57219958	+	975.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 1 of 17)	intron (NM_026254, intron 1 of 17)	12008.0	NM_026254	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108443515-4	chr6	108443014	108444014	+	975.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-46229.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74439696-4	chr1	74439201	74440201	+	975.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176972, intron 25 of 25)	intron (NM_176972, intron 25 of 25)	30317.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-109555951-2	chr5	109555466	109556466	+	975.4833369999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164735, intron 5 of 7)	CpG-11313	3027.0	NM_016715	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	0.0	6.0	4.0	2.0	5.0	4.5
Merged-chr10-44679748-4	chr10	44679256	44680256	+	975.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-221008.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130917805-4	chr4	130917316	130918316	+	975.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	4482.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-107661367-4	chr7	107660863	107661863	+	975.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008905, intron 3 of 24)	intron (NM_008905, intron 3 of 24)	-4115.0	NM_001357437	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-125731941-4	chr2	125731458	125732458	+	975.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7810.0	NM_199022	271849.0	Mm.425101	NM_199022	ENSMUSG00000035109	Shc4	6230417E10Rik|9930029B02Rik|Gm685|RaLP	SHC (Src homology 2 domain containing) family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-143142031-4	chr4	143141521	143142521	+	975.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256380, intron 7 of 7)	intron (NM_001256380, intron 7 of 7)	-5859.0	NR_105988	102465618.0		NR_105988	ENSMUSG00000106597	Mir7021	mmu-mir-7021	microRNA 7021	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117806881-2	chr10	117806391	117807391	+	975.4500119999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-14186.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93475203-4	chr2	93474710	93475710	+	975.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12260.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0.0	0.0	2.5	0.0	0.0	0.0
Merged-chr1-171823369-4	chr1	171822844	171823844	+	975.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16353.0	NM_001252472	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	71.0	110.0	154.0	122.0	166.0	151.0
Merged-chr17-87260968-3	chr17	87260416	87261416	+	975.4166869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139295, intron 1 of 3)	ORR1A2-int|LTR|ERVL-MaLR	5031.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	18.0	19.0	34.5	8.5	10.5	7.5
Merged-chr19-56725320-2	chr19	56724820	56725820	+	975.4166869999999	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007419)	TTS (NM_007419)	2948.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115764241-6	chr6	115763734	115764734	+	975.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1768.0	NM_001168256	94346.0	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55028656-4	chr11	55028153	55029153	+	975.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 1 of 24)	intron (NR_138556, intron 1 of 24)	4818.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40971970-4	chr4	40971459	40972459	+	975.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290448, intron 1 of 15)	B3|SINE|B2	1016.0	NM_023739	74164.0	Mm.247456	NM_023739	ENSMUSG00000028423	Nfx1	1300017N15Rik|3000003M19Rik|NFX.1|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75089096-4	chr8	75088567	75089567	+	975.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4551.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	19.0	69.5	50.0	47.0	53.0	36.0
Merged-chr15-6571081-4	chr15	6570562	6571562	+	975.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8785.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103857544-3	chr3	103857046	103858046	+	975.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-2249.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	155.0	388.5	223.0	18.0	66.5	26.0
Merged-chr1-136578418-4	chr1	136577926	136578926	+	975.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46475.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128337930-4	chr2	128337410	128338410	+	975.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028590, intron 1 of 2)	B4|SINE|B4	91441.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	30.0	56.5	49.0	41.5	108.5	63.0
Merged-chr6-29525320-2	chr6	29524820	29525820	+	975.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1305.0	NM_001311083	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-174085197-4	chr2	174084697	174085697	+	975.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102424, intron 2 of 8)	intron (NM_001102424, intron 2 of 8)	8146.0	NM_001102423	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84340327-4	chr10	84339813	84340813	+	975.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100158.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-149235268-4	chr5	149234759	149235759	+	975.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-29745.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145115609-4	chr6	145115136	145116136	+	975.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281981)	promoter-TSS (NM_001281981)	0.0	NM_001281980	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	25.5	35.0	38.5	11.5	35.0	41.5
Merged-chr19-8799327-2	chr19	8798827	8799827	+	975.375	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026329)	promoter-TSS (NM_026329)	-770.0	NM_026329	67710.0	Mm.22117	NM_026329	ENSMUSG00000071662	Polr2g	2410046K11Rik|A230108L04Rik|C76415|RBP7|Rpo2-7l	polymerase (RNA) II (DNA directed) polypeptide G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32491229-4	chr19	32490767	32491767	+	975.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010799, intron 1 of 4)	intron (NM_010799, intron 1 of 4)	5498.0	NM_010799	17330.0	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6222229-4	chr4	6221737	6222737	+	975.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31132.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	101.5	186.5	172.0	4.0	17.0	6.5
Merged-chr14-118947374-4	chr14	118946867	118947867	+	975.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008929, intron 1 of 11)	intron (NM_008929, intron 1 of 11)	9435.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-81536946-4	chr18	81536420	81537420	+	975.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	455160.0	NR_039589	100628596.0		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24596790-5	chr5	24596347	24597347	+	975.3466800000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025891, exon 3 of 13)	exon (NM_025891, exon 3 of 13)	4733.0	NR_030423	735264.0		NR_030423	ENSMUSG00000076387	Mir671	Mirn671|mmu-mir-671	microRNA 671	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54985857-4	chr18	54985378	54986378	+	975.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	4302.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60837999-4	chr11	60837449	60838449	+	975.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172112, intron 1 of 6)	intron (NM_001172112, intron 1 of 6)	7318.0	NM_145428	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61934818-3	chr11	61934325	61935325	+	975.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	-4568.0	NM_019921	56697.0	Mm.274404	NM_019921	ENSMUSG00000047804	Akap10	1500031L16Rik|B130049N18Rik|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19954157-4	chr3	19953670	19954670	+	975.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2884.0	NM_001276250	12870.0	Mm.13787	NM_007752	ENSMUSG00000003617	Cp	D3Ertd555e	ceruloplasmin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-109287038-2	chr2	109286538	109287538	+	975.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_139303, intron 1 of 16)	Lx9|LINE|L1	6300.0	NM_139303	228421.0	Mm.274086	NM_139303	ENSMUSG00000027115	Kif18a	AU024633|B130001M12Rik|gcd2	kinesin family member 18A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8736177-4	chr3	8735693	8736693	+	975.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69155.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0.5	2.0	12.0	0.0	0.0	2.5
Merged-chr7-127208236-3	chr7	127207704	127208704	+	975.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347655)	promoter-TSS (NM_001347655)	264.0	NM_144522	68449.0	Mm.41420	NM_144522	ENSMUSG00000042492	Tbc1d10b	1110003P22Rik|C87963	TBC1 domain family, member 10b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-30031242-4	chr19	30030715	30031715	+	975.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144873, intron 1 of 15)	CpG	702.0	NM_144873	109113.0	Mm.313364	NM_144873	ENSMUSG00000024817	Uhrf2	2310065A22Rik|AI426270|AW214556|D130071B19Rik|Nirf	ubiquitin-like, containing PHD and RING finger domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-35647646-4	chr13	35647145	35648145	+	975.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-12217.0	NM_009881	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120628069-4	chr11	120627504	120628504	+	975.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010756)	TTS (NM_010756)	-3002.0	NM_153056	209011.0	Mm.292957	NM_153056	ENSMUSG00000025138	Sirt7	-	sirtuin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120095702-2	chr6	120095202	120096202	+	975.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	L1MB5|LINE|L1	2322.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129818899-4	chr4	129818445	129819445	+	975.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1534.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	142.5	179.5	200.5	105.5	258.0	194.5
Merged-chr13-17781995-4	chr13	17781505	17782505	+	975.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027118, intron 1 of 13)	L1_Mus3|LINE|L1	23092.0	NM_001081058	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	10.5	16.0	11.0	0.0	3.5	6.0
Merged-chr10-41615631-4	chr10	41615132	41616132	+	975.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 24 of 47)	intron (NM_001358562, intron 24 of 47)	47616.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-35755540-4	chr5	35755044	35756044	+	975.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2336.0	NM_001177697	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	4.5	0.0	3.5	0.0	0.5	3.0
Merged-chr2-58802665-4	chr2	58802185	58803185	+	975.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47501.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164860984-4	chr2	164860471	164861471	+	975.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3263.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	0.5	7.5	3.5	1.5	4.5	5.5
Merged-chr4-46390670-4	chr4	46390160	46391160	+	975.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1223.0	NM_001347095	74753.0	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116464811-4	chr4	116464311	116465311	+	975.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008641)	promoter-TSS (NM_008641)	-630.0	NM_008641	17776.0	Mm.9287	NM_008641	ENSMUSG00000003810	Mast2	MAST205|Mtssk	microtubule associated serine/threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111554788-4	chr9	111554280	111555280	+	975.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	115699.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	30.0	36.5	42.5	4.0	9.0	13.0
Merged-chr8-120792871-4	chr8	120792375	120793375	+	975.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54236.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165855800-4	chr2	165855309	165856309	+	975.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	2364.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20732496-3	chr11	20731996	20732996	+	975.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181411, intron 1 of 8)	L1MD2|LINE|L1	9060.0	NM_001290545	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	9.5	0.0	6.0	0.0	7.0	2.5
Merged-chr3-81046700-3	chr3	81046200	81047200	+	975.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	10284.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	9.5	36.0	13.0	16.5	18.0	25.0
Merged-chr5-41449663-4	chr5	41449172	41450172	+	975.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	258019.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	13.0	26.5	8.0	11.5	15.5	10.0
Merged-chr16-57530727-4	chr16	57530228	57531228	+	975.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-18514.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	3.5	8.5	5.5	1.5	3.5	4.0
Merged-chr2-71043526-4	chr2	71042998	71043998	+	975.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 1 of 9)	MTD|LTR|ERVL-MaLR	12108.0	NM_145524	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121722684-4	chr11	121722161	121723161	+	975.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20234.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-56222619-4	chr4	56222121	56223121	+	975.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	518804.0	NM_025271	11471.0	Mm.251434	NM_025271	ENSMUSG00000070980	Actl7b	Gm26657|Tact1	actin-like 7b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5521577-4	chr11	5521042	5522042	+	975.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013842, intron 1 of 4)	CpG	901.0	NM_001271730	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	39.0	124.0	108.5	43.0	159.5	87.0
Merged-chr4-139579185-4	chr4	139578678	139579678	+	975.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	4458.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	34.5	117.5	90.5	4.0	15.5	13.5
Merged-chr5-120558976-4	chr5	120558483	120559483	+	975.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145853, intron 3 of 27)	intron (NM_145853, intron 3 of 27)	29630.0	NM_145853	252972.0	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72323260-4	chr8	72322768	72323768	+	975.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4206.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	18.0	143.5	65.5	34.5	120.5	96.0
Merged-chr7-16255112-2	chr7	16254612	16255612	+	975.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001173550, intron 1 of 1)	intron (NM_001173550, intron 1 of 1)	4226.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	90.5	190.5	112.5	92.5	193.5	140.5
Merged-chr5-72844543-3	chr5	72844040	72845040	+	975.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 1 of 17)	L1MB5|LINE|L1	23908.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128565393-4	chr10	128564922	128565922	+	975.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011119, intron 1 of 11)	CpG	512.0	NM_011119	18813.0	Mm.4742	NM_011119	ENSMUSG00000025364	Pa2g4	38kDa|AA672939|Ebp1|Plfap	proliferation-associated 2G4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-57950161-4	chr4	57949670	57950670	+	975.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011660, intron 3 of 4)	intron (NM_011660, intron 3 of 4)	6241.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59612011-4	chr15	59611537	59612537	+	975.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36617.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	23.5	22.0	22.5	23.0	9.5	12.0
Merged-chr15-35724720-4	chr15	35724232	35725232	+	975.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177151, intron 34 of 61)	intron (NM_177151, intron 34 of 61)	-63685.0	NR_030606	100124469.0		NR_030606	ENSMUSG00000077890	Mir875	Mirn875|mir-875|mmu-mir-875	microRNA 875	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106549251-4	chr1	106548740	106549740	+	975.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	-2609.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-148933315-4	chr3	148932824	148933824	+	975.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081298, intron 1 of 23)	intron (NM_001081298, intron 1 of 23)	21311.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-13424718-4	chr1	13424219	13425219	+	975.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-50636.0	NM_008678	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0.0	14.5	7.5	6.5	6.5	9.5
Merged-chr8-104176111-4	chr8	104175630	104176630	+	975.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001141925, intron 1 of 4)	intron (NM_001141925, intron 1 of 4)	5617.0	NM_001141925	65115.0	Mm.41849	NM_001141922	ENSMUSG00000031872	Bean1	Bean	brain expressed, associated with Nedd4, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167351097-4	chr2	167350596	167351596	+	975.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1918.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40638743-4	chr19	40638241	40639241	+	975.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	-21029.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	165.5	327.0	254.5	87.5	284.5	231.0
Merged-chr11-49253249-3	chr11	49252761	49253761	+	975.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110148, intron 3 of 3)	MLT1G3|LTR|ERVL-MaLR	2709.0	NM_001110150	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8594778-4	chr11	8594285	8595285	+	975.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 3 of 30)	URR1A|DNA|hAT-Charlie	69750.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41263798-4	chr13	41263310	41264310	+	975.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001135577, intron 1 of 1)	intron (NM_001135577, intron 1 of 1)	13966.0	NM_001135577	108934.0	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57761437-4	chr15	57760934	57761934	+	975.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 1 of 3)	intron (NM_199449, intron 1 of 3)	66767.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8140435-4	chr17	8139954	8140954	+	975.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026611, intron 4 of 8)	intron (NM_026611, intron 4 of 8)	7334.0	NM_001083938	100037283.0	Mm.426736	NM_001083938	ENSMUSG00000095687	Rnaset2a	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-83728567-4	chr2	83728087	83729087	+	975.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008402, intron 1 of 29)	intron (NM_008402, intron 1 of 29)	4190.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	23.5	42.5	26.0	26.0	37.0	23.0
Merged-chr7-35157690-3	chr7	35157203	35158203	+	975.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28682.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	1.0	2.5	4.5	2.0	4.0	3.5
Merged-chr15-5106540-2	chr15	5106040	5107040	+	975.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163138, intron 2 of 3)	B2_Mm2|SINE|B2	1993.0	NM_001163138	239319.0	Mm.31252	NM_001163138	ENSMUSG00000041849	Card6	D730008L15	caspase recruitment domain family, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-112728886-4	chr6	112728376	112729376	+	975.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080448, intron 20 of 21)	intron (NM_080448, intron 20 of 21)	-32206.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152881080-4	chr2	152880572	152881572	+	975.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001141976, exon 9 of 18)	exon (NM_001141976, exon 9 of 18)	16005.0	NR_049195	100885834.0		NR_049195	ENSMUSG00000093746	Mir5622	Gm24421|mmu-mir-5622	microRNA 5622	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66341731-2	chr9	66341231	66342231	+	975.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-8719.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47769917-2	chr17	47769417	47770417	+	975.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-15827.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-21261801-4	chr2	21261312	21262312	+	975.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56088.0	NM_177588	208967.0	Mm.268841	NM_177588	ENSMUSG00000048550	Thnsl1	AW413632	threonine synthase-like 1 (bacterial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-104982702-4	chr5	104982205	104983205	+	975.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030239)	promoter-TSS (NM_030239)	12.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	21.5	32.5	37.0	29.5	18.0	19.5
Merged-chr2-122763216-4	chr2	122762722	122763722	+	975.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2137.0	NM_001162503	59010.0	Mm.28986	NM_021507	ENSMUSG00000005803	Sqor	0610039J17Rik|4930557M22Rik|Sqrdl	sulfide quinone oxidoreductase	protein-coding	28.0	17.0	19.5	5.0	0.0	9.5
Merged-chr12-85959606-4	chr12	85959091	85960091	+	975.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	119450.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46077891-8	chr11	46077434	46078434	+	975.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291890, intron 3 of 22)	intron (NM_001291890, intron 3 of 22)	21950.0	NM_001291891	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-38307854-4	chr5	38307346	38308346	+	975.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11663.0	NM_013503	13492.0	Mm.167154	NM_013503	ENSMUSG00000039358	Drd5	D5R|Drd-5|Drd1b|Gpcr1	dopamine receptor D5	protein-coding	0.0	0.5	0.0	0.0	0.5	0.0
Merged-chr17-71300553-4	chr17	71300075	71301075	+	975.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	10436.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	14.5	34.0	12.5	12.5	55.0	31.0
Merged-chr2-60124841-4	chr2	60124341	60125341	+	975.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 1 of 35)	intron (NM_001001182, intron 1 of 35)	899.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5493959-4	chr17	5493440	5494440	+	975.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	1340.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47561014-4	chr6	47560517	47561517	+	975.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146689, intron 3 of 19)	intron (NM_001146689, intron 3 of 19)	34013.0	NM_001146689	14056.0	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116635603-3	chr11	116635107	116636107	+	975.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-8588.0	NM_172572	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127713258-4	chr7	127712764	127713764	+	975.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301283, intron 1 of 2)	intron (NM_001301283, intron 1 of 2)	327.0	NM_001301283	13019.0	Mm.389954	NM_007795	ENSMUSG00000042340	Ctf1	CT-1	cardiotrophin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83128200-4	chr15	83127697	83128697	+	975.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 7 of 7)	intron (NM_001347082, intron 7 of 7)	-5396.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63712828-4	chr9	63712322	63713322	+	975.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	45172.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191396248-4	chr1	191395746	191396746	+	975.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144880, exon 1 of 13)	exon (NM_144880, exon 1 of 13)	795.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	16.0	34.0	37.5	17.0	53.5	44.0
Merged-chr13-20798110-4	chr13	20797615	20798615	+	975.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012054, intron 1 of 20)	intron (NM_012054, intron 1 of 20)	4002.0	NM_012054	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	134.5	252.0	220.5	52.0	107.0	92.5
Merged-chr4-36289344-4	chr4	36288847	36289847	+	975.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165999, intron 3 of 7)	intron (NM_001165999, intron 3 of 7)	356106.0	NR_030545	100124458.0		NR_030545	ENSMUSG00000077851	Mir876	Mirn876|mir-876|mmu-mir-876	microRNA 876	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83302172-2	chr11	83301672	83302672	+	975.0833130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001035854)	promoter-TSS (NM_001035854)	-525.0	NM_027915	71770.0	Mm.39053	NM_027915	ENSMUSG00000035152	Ap2b1	1300012O03Rik|AI788979|AP105B	adaptor-related protein complex 2, beta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27345707-4	chr3	27345216	27346216	+	975.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25635.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-69576517-4	chr18	69576012	69577012	+	975.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	230352.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24202892-4	chr16	24202380	24203380	+	975.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120190.0	NR_155457	108168278.0	Mm.417246	NR_155457		Gm46545	-	predicted gene, 46545	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62450339-4	chr15	62449817	62450817	+	975.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-230866.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-9629888-4	chr15	9629399	9630399	+	975.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305042, intron 25 of 36)	intron (NM_001305042, intron 25 of 36)	-100023.0	NM_008372	16197.0	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29079054-4	chr17	29078513	29079513	+	975.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_036469, exon 1 of 2)	non-coding (NR_036469, exon 1 of 2)	113.0	NR_036469	100504267.0	Mm.438550	NR_036469	ENSMUSG00000085912	Trp53cor1	Gm16197|linc-p21|lincRNA-p21	tumor protein p53 pathway corepressor 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122807268-4	chr10	122806758	122807758	+	975.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 3 of 9)	intron (NM_001110218, intron 3 of 9)	127943.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120631351-4	chr11	120630866	120631866	+	975.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010756, intron 1 of 2)	intron (NM_010756, intron 1 of 2)	2181.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-82797607-4	chr6	82797098	82798098	+	975.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23144.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-71113413-3	chr14	71112914	71113914	+	975.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	-137859.0	NR_046075	100043132.0	Mm.399336	NR_046075	ENSMUSG00000115139	Gm4251	-	predicted gene 4251	ncRNA	3.0	23.5	6.0	9.0	5.0	3.5
Merged-chr5-21034678-4	chr5	21034184	21035184	+	975.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001356590, exon 1 of 19)	5' UTR (NM_001356590, exon 1 of 19)	563.0	NM_001356592	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-66849111-4	chr6	66848603	66849603	+	975.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43771.0	NM_001166720	546903.0	Mm.484975	NM_001166720	ENSMUSG00000093755	Vmn1r39	EG546903|Gm5993	vomeronasal 1 receptor 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-137405910-4	chr6	137405413	137406413	+	975.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 12 of 26)	intron (NM_011216, intron 12 of 26)	-4808.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44582648-4	chr9	44582153	44583153	+	975.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22239.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	11.0	3.0	8.0	15.5	12.0	7.0
Merged-chr1-191110072-4	chr1	191109567	191110567	+	975.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11653.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	59.5	182.5	98.0	75.0	218.0	148.0
Merged-chr5-142932478-4	chr5	142931963	142932963	+	975.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25709.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20180745-7	chr13	20180106	20181106	+	975.035706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	ORR1F|LTR|ERVL-MaLR	90099.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	33.0	64.5	51.5	20.0	86.5	56.5
Merged-chr13-49326463-4	chr13	49325966	49326966	+	975.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15083.0	NM_001039179	76895.0	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	BICD cargo adaptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59016594-7	chr15	59016079	59017079	+	975.0326539999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	T-rich|Low_complexity|Low_complexity	65447.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-141013575-4	chr5	141013048	141014048	+	975.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12952.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20816656-4	chr18	20816161	20817161	+	975.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001361188)	TTS (NM_001361188)	-70257.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22467783-3	chr9	22467276	22468276	+	975.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018739, intron 1 of 5)	CpG	580.0	NM_018739	55934.0	Mm.38235	NM_018739	ENSMUSG00000032239	Rp9	PAP-1|Rp9h	retinitis pigmentosa 9 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136451085-4	chr6	136450588	136451588	+	975.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35519.0	NM_001201390	100502936.0	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	24.5	55.5	24.0	11.5	83.0	27.0
Merged-chr7-80208942-3	chr7	80208481	80209481	+	975.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	10540.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91197745-2	chr2	91197245	91198245	+	975.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2629.0	NM_001177730	22259.0	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3132244-4	chr11	3131766	3132766	+	975.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_003517)	TTS (NR_003517)	8245.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98793262-1	chr7	98792762	98793762	+	975.0	f0_balb.idr	Intergenic	Intergenic	-41850.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.0	2.0	0.5	0.5	0.0	7.5
Merged-chr19-11447429-2	chr19	11446929	11447929	+	975.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021718, intron 1 of 6)	intron (NM_021718, intron 1 of 6)	3871.0	NM_021718	60361.0	Mm.33957	NM_021718	ENSMUSG00000056290	Ms4a4b	AI463180|Chandra|Ly116	membrane-spanning 4-domains, subfamily A, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-121981646-4	chr7	121981099	121982099	+	975.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033318)	promoter-TSS (NM_001033318)	94.0	NM_001033318	233824.0	Mm.442015	NM_001033318	ENSMUSG00000034951	Cog7	5630400E24Rik|Gm167	component of oligomeric golgi complex 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88250096-2	chr1	88249596	88250596	+	975.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 28 of 41)	intron (NM_001281466, intron 28 of 41)	19312.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-88821030-2	chr13	88820530	88821530	+	975.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010103)	promoter-TSS (NM_010103)	-442.0	NM_010103	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76540335-4	chr12	76539834	76540834	+	975.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	6774.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15831408-2	chr17	15830908	15831908	+	975.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4822.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0.0	0.0	0.5	0.0	5.0	0.0
Merged-chr1-106984210-2	chr1	106983713	106984713	+	975.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172852, intron 3 of 7)	intron (NM_172852, intron 3 of 7)	3229.0	NM_172852	241196.0	Mm.110886	NM_172852	ENSMUSG00000048775	Serpinb13	5430417G24|HUR7|HURPIN|PI13|headpin	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 13	protein-coding	0.0	3.0	0.0	0.0	2.0	1.5
Merged-chr12-8260468-3	chr12	8259971	8260971	+	975.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172401, intron 4 of 6)	intron (NM_172401, intron 4 of 6)	41483.0	NM_001312876	238057.0	Mm.271308	NM_013527	ENSMUSG00000037660	Gdf7	BMP12	growth differentiation factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167976224-2	chr2	167975724	167976724	+	975.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 8 of 8)	intron (NM_011201, intron 8 of 8)	34369.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-84103938-2	chr7	84103438	84104438	+	975.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-17433.0	NM_030728	80982.0	Mm.160389	NM_030728	ENSMUSG00000052353	Cemip	12H19.01.T7|6330404C01Rik|9930013L23Rik|AY007814|Kiaa1199	cell migration inducing protein, hyaluronan binding	protein-coding	0.0	2.5	0.0	0.0	2.5	0.0
Merged-chr6-59023746-2	chr6	59023246	59024246	+	975.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153574, intron 1 of 17)	intron (NM_153574, intron 1 of 17)	756.0	NM_153574	58909.0	Mm.28813	NM_153574	ENSMUSG00000037709	Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70073705-2	chr14	70073205	70074205	+	975.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3740.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-144981849-4	chr7	144981311	144982311	+	975.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41886.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	0.0	0.0	0.0	0.0	6.5	7.0
Merged-chr14-63137562-2	chr14	63137062	63138062	+	975.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 5 of 9)	Tigger7|DNA|TcMar-Tigger	15100.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-139068413-1	chr1	139067913	139068913	+	975.0	f0_balb.idr	intron (NM_001166501, intron 9 of 21)	GA-rich|Low_complexity|Low_complexity	90756.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88231347-4	chr7	88230856	88231856	+	975.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46729.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	23.0	54.5	40.5	37.0	57.5	45.5
Merged-chr5-67841673-2	chr5	67841173	67842173	+	975.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	5758.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-60899362-3	chr1	60898829	60899829	+	975.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9696.0	NM_009843	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	2.0	11.0	8.0	0.0	0.0	2.0
Merged-chr4-86149988-2	chr4	86149488	86150488	+	975.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029967, intron 3 of 27)	L1Md_F2|LINE|L1	96073.0	NM_029967	77739.0	Mm.331690	NM_029967	ENSMUSG00000066113	Adamtsl1	5930437A14Rik|6720426B09Rik|ADAMTSL-1	ADAMTS-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-76095050-1	chr13	76094550	76095550	+	975.0	f1_balb.idr	intron (NM_029847, intron 1 of 7)	intron (NM_029847, intron 1 of 7)	3610.0	NM_001360843	77041.0	Mm.196399	NM_029847	ENSMUSG00000021592	Arsk	2810429K17Rik|4833414G15Rik	arylsulfatase K	protein-coding	2.0	2.5	0.5	0.0	5.0	4.5
Merged-chr8-119809629-2	chr8	119809129	119810129	+	975.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028071, exon 4 of 4)	3' UTR (NM_028071, exon 4 of 4)	30950.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-69177264-4	chr17	69176743	69177743	+	974.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	17887.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41346630-4	chr4	41346103	41347103	+	974.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-2393.0	NM_001355509	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78160155-4	chr10	78159655	78160655	+	974.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9613.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9099496-4	chr13	9099004	9100004	+	974.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 1 of 17)	intron (NM_172585, intron 1 of 17)	5623.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-33040971-4	chr12	33040478	33041478	+	974.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024478, intron 15 of 19)	intron (NM_001024478, intron 15 of 19)	51897.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	27.0	31.0	34.0	17.5	16.5	18.5
Merged-chr9-66069806-4	chr9	66069307	66070307	+	974.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025612)	promoter-TSS (NM_001025612)	-76.0	NM_001025612	382083.0	Mm.477103	NM_001025612	ENSMUSG00000039452	Snx22	Gm1120	sorting nexin 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-30480666-4	chr9	30480143	30481143	+	974.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53314.0	NM_028874	102607.0	Mm.35084	NM_028874	ENSMUSG00000031993	Snx19	3526401K03Rik|AI195321|AI848208|mKIAA0254	sorting nexin 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4348970-8	chr18	4348491	4349491	+	974.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007746, exon 2 of 8)	exon (NM_007746, exon 2 of 8)	3962.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-41158283-4	chr9	41157758	41158758	+	974.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176860)	promoter-TSS (NM_176860)	-196.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	41.0	65.5	72.0	28.5	38.0	35.0
Merged-chr3-152555287-4	chr3	152554788	152555788	+	974.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355635, intron 6 of 8)	intron (NM_001355635, intron 6 of 8)	-111625.0	NR_040386	99542.0	Mm.394921	NR_040386	ENSMUSG00000097745	AI115009	-	expressed sequence AI115009	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-41019870-4	chr8	41019338	41020338	+	974.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015457, intron 2 of 2)	B3|SINE|B2	2370.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	67.5	111.0	78.0	51.0	117.0	51.5
Merged-chr3-9849979-4	chr3	9849478	9850478	+	974.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16299.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	10.5	29.0	17.0	11.5	6.5	4.0
Merged-chr11-69123629-4	chr11	69123152	69124152	+	974.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_033041)	TTS (NM_033041)	-2725.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	12.5	63.0	57.0	10.0	104.0	47.5
Merged-chr7-74645776-4	chr7	74645261	74646261	+	974.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90981.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31225078-4	chr15	31224617	31225617	+	974.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146057, intron 1 of 3)	intron (NM_146057, intron 1 of 3)	732.0	NM_146057	223453.0	Mm.222867	NM_146057	ENSMUSG00000039168	Dap	4921531N22Rik|AI789753|AU040360	death-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-157101302-4	chr1	157100799	157101799	+	974.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305061, intron 5 of 8)	intron (NM_001305061, intron 5 of 8)	7351.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	44.5	30.0	14.5	18.5	8.0	8.0
Merged-chr8-83739389-4	chr8	83738863	83739863	+	974.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 1 of 19)	intron (NM_011925, intron 1 of 19)	1948.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	156.5	383.0	266.5	137.5	367.5	216.5
Merged-chr10-93946090-4	chr10	93945609	93946609	+	974.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17754.0	NR_029764	723908.0		NR_029764	ENSMUSG00000065607	Mir331	Mirn331|mmu-mir-331	microRNA 331	ncRNA	207.0	354.5	248.5	12.5	12.5	29.0
Merged-chr3-95106252-2	chr3	95105752	95106752	+	974.9166869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293707, intron 1 of 14)	intron (NM_001293707, intron 1 of 14)	678.0	NM_008847	18720.0	Mm.296409	NM_008847	ENSMUSG00000028126	Pip5k1a	PI4P5K-I[a]|PIP5K1-alpha|PIP5KIalpha|Pipk5a	phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102037294-5	chr2	102036808	102037808	+	974.8800050000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178886, intron 4 of 5)	MIRb|SINE|MIR	149152.0	NM_178886	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	6.0	0.0	0.0	0.0	5.0	1.0
Merged-chr5-135466082-4	chr5	135465582	135466582	+	974.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	-71536.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69125378-4	chr11	69124897	69125897	+	974.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011786)	promoter-TSS (NM_011786)	-980.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	14.5	125.0	59.0	28.0	102.0	54.0
Merged-chr10-10554427-4	chr10	10553920	10554920	+	974.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026405, intron 1 of 2)	intron (NM_026405, intron 1 of 2)	3787.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90072486-4	chr3	90072011	90073011	+	974.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293748)	promoter-TSS (NM_001293748)	-140.0	NM_001293748	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120019650-4	chr1	120019133	120020133	+	974.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012322, intron 1 of 13)	intron (NM_001012322, intron 1 of 13)	12653.0	NM_001012322	319229.0	Mm.189223	NM_001012322	ENSMUSG00000026387	Sctr	6530402O03Rik	secretin receptor	protein-coding	18.0	47.0	23.0	11.0	31.5	36.0
Merged-chr14-30200513-4	chr14	30200017	30201017	+	974.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 3 of 46)	intron (NM_001083616, intron 3 of 46)	152969.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139742854-4	chr5	139742353	139743353	+	974.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-6520.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68521568-4	chr11	68521072	68522072	+	974.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004435, intron 2 of 19)	intron (NM_001004435, intron 2 of 19)	18553.0	NR_126154	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-58742866-2	chr7	58742366	58743366	+	974.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009728, intron 2 of 20)	MTEb|LTR|ERVL-MaLR	84664.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-18625028-6	chr3	18624571	18625571	+	974.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-144594.0	NR_040544	73959.0	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91399120-4	chr16	91398615	91399615	+	974.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 7 of 7)	intron (NM_001347258, intron 7 of 7)	-7120.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-76897146-4	chr8	76896645	76897645	+	974.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028579, intron 1 of 1)	intron (NR_028579, intron 1 of 1)	3476.0	NR_028579	102640923.0	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	-	predicted gene 10649	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124476002-4	chr5	124475507	124476507	+	974.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030259, intron 1 of 3)	(TG)n|Simple_repeat|Simple_repeat	2228.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134319742-3	chr6	134319242	134320242	+	974.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153848, intron 4 of 8)	MLT1B|LTR|ERVL-MaLR	-76587.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0.0	9.5	9.5	9.0	51.0	26.5
Merged-chr4-135307093-4	chr4	135306598	135307598	+	974.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34338.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-97313135-4	chr10	97312641	97313641	+	974.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110337.0	NR_039547	100628616.0		NR_039547	ENSMUSG00000105557	Mir3966	mmu-mir-3966|mu-mir-3966	microRNA 3966	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20373000-4	chr16	20372497	20373497	+	974.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013790, intron 16 of 29)	intron (NM_013790, intron 16 of 29)	-47593.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95416862-4	chr4	95416360	95417360	+	974.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140647.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139382929-4	chr5	139382393	139383393	+	974.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	2254.0	NM_030258	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-138145019-5	chr3	138144334	138145334	+	974.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348197, intron 1 of 8)	intron (NM_001348197, intron 1 of 8)	1035.0	NM_001348197	108943.0	Mm.471692	NM_175389	ENSMUSG00000004127	Trmt10a	3110023L08Rik|AA794508|Rg9mtd2|Rnmtd2	tRNA methyltransferase 10A	protein-coding	0.0	0.0	0.5	0.0	0.0	1.0
Merged-chr15-67039615-4	chr15	67039159	67040159	+	974.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70018.0	NM_008681	17988.0	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	5.5	13.5	3.5	18.5	39.5	40.5
Merged-chr3-81107050-4	chr3	81106528	81107528	+	974.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	70612.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	35.5	50.0	55.5	62.0	77.0	53.5
Merged-chr14-121378457-4	chr14	121377962	121378962	+	974.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145465, intron 1 of 10)	CpG	768.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	13.5	38.5	40.0	9.5	32.0	27.5
Merged-chr7-129995704-4	chr7	129995201	129996201	+	974.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	33536.0	NR_046077	100043150.0	Mm.334264	NR_046077	ENSMUSG00000108504	Gm4265	-	predicted gene 4265	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81603022-4	chr10	81602508	81603508	+	974.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-2108.0	NM_001346695	114606.0	Mm.206764	NM_053254	ENSMUSG00000034758	Tle6	1810057E06Rik|Grg6	transducin-like enhancer of split 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25283822-4	chr7	25283323	25284323	+	974.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027882, intron 1 of 19)	intron (NM_027882, intron 1 of 19)	1644.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97929688-4	chr3	97929174	97930174	+	974.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033779)	promoter-TSS (NM_001033779)	-499.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11530228-3	chr2	11529720	11530720	+	974.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	23709.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6268303-4	chr19	6267800	6268800	+	974.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3456.0	NR_029720	387187.0		NR_029720	ENSMUSG00000065523	Mir192	Mirn192|mir-192|mmu-mir-192	microRNA 192	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86431144-2	chr1	86430644	86431644	+	974.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	4815.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96393901-4	chr9	96393374	96394374	+	974.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-29443.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	4.0	25.5	14.0	4.0	25.5	13.5
Merged-chr19-45782776-4	chr19	45782216	45783216	+	974.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023799, intron 1 of 15)	intron (NM_023799, intron 1 of 15)	837.0	NR_151594	76055.0	Mm.122725	NM_023799	ENSMUSG00000025220	Mgea5	Hy5|Ncoat|OGA	meningioma expressed antigen 5 (hyaluronidase)	protein-coding	17.5	26.0	10.0	15.0	12.0	9.0
Merged-chr17-34837683-4	chr17	34837162	34838162	+	974.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019442)	promoter-TSS (NM_019442)	643.0	NM_001163770	112403.0	Mm.275309	NM_033613	ENSMUSG00000040482	Dxo	Dom3z|NG6	decapping exoribonuclease	protein-coding	59.5	146.0	80.5	54.0	81.5	100.5
Merged-chr18-4349790-4	chr18	4349332	4350332	+	974.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 1 of 7)	intron (NM_007746, intron 1 of 7)	3121.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85554536-4	chr8	85554022	85555022	+	974.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019794, intron 1 of 8)	intron (NM_019794, intron 1 of 8)	749.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	21.0	49.5	46.5	29.5	97.0	40.0
Merged-chr17-56674241-4	chr17	56673738	56674738	+	974.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252467, intron 1 of 13)	URR1B|DNA|hAT-Charlie	1013.0	NM_027933	71810.0	Mm.29608	NM_027933	ENSMUSG00000002372	Ranbp3	2610024N24Rik|AA408221	RAN binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155065965-4	chr1	155065448	155066448	+	974.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151545, intron 3 of 6)	intron (NR_151545, intron 3 of 6)	17316.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62181753-4	chr15	62181255	62182255	+	974.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 3 of 6)	intron (NR_132746, intron 3 of 6)	37696.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4460302-4	chr2	4459828	4460828	+	974.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	59352.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87280117-4	chr17	87279621	87280621	+	974.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015506, intron 2 of 4)	MER110-int|LTR|ERV1	2693.0	NR_015506	74597.0	Mm.63783	NR_015506	ENSMUSG00000085287	4833418N02Rik	-	RIKEN cDNA 4833418N02 gene	ncRNA	2.0	15.5	2.0	8.0	16.5	5.0
Merged-chr10-80597290-4	chr10	80596784	80597784	+	974.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-5596.0	NM_001100606	100113398.0	Mm.273170	NM_001100606	ENSMUSG00000113640	Adat3	A430024H01Rik	adenosine deaminase, tRNA-specific 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139974529-3	chr7	139974040	139975040	+	974.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347613, intron 5 of 5)	intron (NM_001347613, intron 5 of 5)	4215.0	NM_001347614	381933.0	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-115714378-3	chr3	115713882	115714882	+	974.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007901, intron 1 of 1)	intron (NM_007901, intron 1 of 1)	673.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	2.5	2.0	0.0	3.0	2.0	0.0
Merged-chr14-25393111-3	chr14	25392611	25393611	+	974.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-66074.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116693751-4	chr6	116693246	116694246	+	974.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178768, exon 5 of 5)	3' UTR (NM_178768, exon 5 of 5)	-19910.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70778205-4	chr14	70777664	70778664	+	974.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010071, exon 5 of 5)	3' UTR (NM_010071, exon 5 of 5)	3783.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	7.0	33.5	26.5	49.0	52.5	56.0
Merged-chr4-150110533-4	chr4	150110036	150111036	+	974.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-8808.0	NM_019741	56485.0	Mm.260220	NM_019741	ENSMUSG00000028976	Slc2a5	AI526984|Glut5|Slc5a	solute carrier family 2 (facilitated glucose transporter), member 5	protein-coding	58.0	134.5	72.0	15.0	60.5	32.5
Merged-chr1-191438628-4	chr1	191438134	191439134	+	974.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151615, intron 5 of 5)	intron (NR_151615, intron 5 of 5)	26414.0	NR_151615	102634668.0		NR_151615		Gm32200	-	predicted gene, 32200	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35274886-4	chr17	35274397	35275397	+	974.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11774.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	5.5	0.0	1.5	5.5	0.0	1.5
Merged-chr9-21410084-4	chr9	21409589	21410589	+	974.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045742, intron 1 of 4)	intron (NR_045742, intron 1 of 4)	1631.0	NR_045742	330902.0	Mm.437044	NR_045742	ENSMUSG00000097665	Gm16853	4930565O14	predicted gene, 16853	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119142396-4	chr4	119141894	119142894	+	974.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	31462.0	NM_001145935	195522.0	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	3.5	2.0	7.5	5.0	2.5	6.5
Merged-chr4-138083302-4	chr4	138082796	138083796	+	974.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355700, intron 2 of 30)	intron (NM_001355700, intron 2 of 30)	55222.0	NR_126429	73563.0	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	16.5	51.0	30.5	10.0	2.0	17.5
Merged-chr16-21412804-4	chr16	21412309	21413309	+	974.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10309.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100883377-4	chr12	100882874	100883874	+	974.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177674, intron 2 of 2)	intron (NM_001177674, intron 2 of 2)	16150.0	NM_001177674	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-45853112-4	chr11	45852619	45853619	+	974.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045520, intron 1 of 11)	intron (NM_001045520, intron 1 of 11)	1155.0	NM_001045520	216705.0	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41507096-4	chr4	41506588	41507588	+	974.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253788, intron 4 of 5)	CpG	676.0	NM_028624	73721.0	Mm.45614	NM_028624	ENSMUSG00000028441	1110017D15Rik	Cbe1|Smrp1	RIKEN cDNA 1110017D15 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32912604-4	chr2	32912097	32913097	+	974.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146119, intron 5 of 13)	intron (NM_146119, intron 5 of 13)	36463.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135826255-5	chr3	135825769	135826769	+	974.679993	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001135150, exon 2 of 9)	5' UTR (NM_001135150, exon 2 of 9)	479.0	NM_001135150	67547.0	Mm.30239	NM_026228	ENSMUSG00000053897	Slc39a8	4933419D20Rik|AA986696|BIGM103|ZIP-8|Zip8	solute carrier family 39 (metal ion transporter), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114678524-2	chr11	114678024	114679024	+	974.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	3056.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-45666362-4	chr16	45665865	45666865	+	974.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172455, intron 12 of 17)	Lx7|LINE|L1	-12247.0	NM_145389	212998.0	Mm.97511	NM_145389	ENSMUSG00000033187	BC016579	-	cDNA sequence, BC016579	protein-coding	3.5	5.0	8.0	8.0	2.0	8.5
Merged-chr17-5232470-3	chr17	5231972	5232972	+	974.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	186295.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170155111-4	chr2	170154589	170155589	+	974.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12414.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102408024-4	chr11	102407528	102408528	+	974.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026542)	promoter-TSS (NM_026542)	-511.0	NM_026542	68066.0	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-143710596-4	chr1	143710101	143711101	+	974.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	-7708.0	NM_145991	214498.0	Mm.156727	NM_145991	ENSMUSG00000026361	Cdc73	8430414L16Rik|C130030P16Rik|C81219|Hrpt2	cell division cycle 73, Paf1/RNA polymerase II complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129631299-2	chr2	129630808	129631808	+	974.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291021, exon 6 of 6)	3' UTR (NM_001291021, exon 6 of 6)	35846.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	47.5	59.0	51.0	19.5	60.0	47.0
Merged-chr14-22101741-2	chr14	22101241	22102241	+	974.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 2 of 6)	intron (NM_028275, intron 2 of 6)	82029.0	NM_028275	76633.0	Mm.489898	NM_028275	ENSMUSG00000063458	Lrmda	1700112E06Rik|2700009F18Rik	leucine rich melanocyte differentiation associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53094489-2	chr4	53093989	53094989	+	974.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 8 of 49)	intron (NM_013454, intron 8 of 49)	65406.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123563786-4	chr9	123563293	123564293	+	974.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357485, intron 7 of 19)	intron (NM_001357485, intron 7 of 19)	34040.0	NM_030692	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47001529-2	chr14	47001029	47002029	+	974.666626	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001163433, exon 1 of 12)	5' UTR (NM_001163433, exon 1 of 12)	189.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	0.0	9.5	7.0	0.0	11.0	4.5
Merged-chr7-102028176-4	chr7	102027682	102028682	+	974.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 6 of 8)	intron (NM_029211, intron 6 of 8)	-10027.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	13.0	14.5	12.5	11.5	23.0	18.0
Merged-chr3-87351229-4	chr3	87350693	87351693	+	974.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6688.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	145.5	489.0	315.5	80.5	207.5	142.5
Merged-chr5-102009884-4	chr5	102009370	102010370	+	974.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172882, exon 3 of 67)	5' UTR (NM_172882, exon 3 of 67)	60051.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	22.5	41.0	53.0	23.0	65.5	40.5
Merged-chr4-3692988-4	chr4	3692490	3693490	+	974.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	ORR1G|LTR|ERVL-MaLR	14869.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	1.0	15.5	5.0	0.0	9.5	10.5
Merged-chr13-33964596-4	chr13	33964058	33965058	+	974.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163241)	promoter-TSS (NM_001163241)	-101.0	NM_001163239	18105.0	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	N-ribosyldihydronicotinamide quinone reductase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-25084017-3	chr5	25083515	25084515	+	974.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 1 of 15)	intron (NM_145401, intron 1 of 15)	16627.0	NM_145401	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-74974236-4	chr18	74973743	74974743	+	974.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110446, intron 5 of 6)	ID_B1|SINE|B4	7304.0	NR_110446	71545.0	Mm.488094	NR_110446		9030625G05Rik	-	RIKEN cDNA 9030625G05 gene	ncRNA	0.0	8.0	3.0	0.0	7.5	0.0
Merged-chr7-45538720-5	chr7	45538110	45539110	+	974.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148927, intron 8 of 19)	intron (NM_148927, intron 8 of 19)	12280.0	NM_148927	69217.0	Mm.274158	NM_148927	ENSMUSG00000040428	Plekha4	2410005C22Rik|C88169|Pepp1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding	26.0	38.5	21.0	20.0	28.5	21.5
Merged-chr16-44243467-4	chr16	44242963	44243963	+	974.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198034, intron 24 of 24)	intron (NM_198034, intron 24 of 24)	70066.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61310233-4	chr9	61309802	61310802	+	974.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16493.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78373975-4	chr17	78373446	78374446	+	974.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 16 of 16)	intron (NM_015800, intron 16 of 16)	44206.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58636761-4	chr11	58636252	58637252	+	974.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3713.0	NM_001039047	216781.0	Mm.339507	NM_001039047	ENSMUSG00000037124	Trim58	Gm16|Gm1783	tripartite motif-containing 58	protein-coding	15.0	11.5	9.5	21.5	58.0	27.0
Merged-chr17-81433295-4	chr17	81432802	81433802	+	974.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 5 of 8)	intron (NR_104580, intron 5 of 8)	305085.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79940915-4	chr10	79940404	79941404	+	974.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001288625, intron 3 of 8)	intron (NM_001288625, intron 3 of 8)	13563.0	NM_001288625	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-19986891-4	chr14	19986417	19987417	+	974.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9668.0	NM_001285909	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21181640-4	chr9	21181131	21182131	+	974.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183408, intron 1 of 14)	CpG	-2470.0	NM_001310750	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30062638-7	chr2	30062157	30063157	+	974.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023871, intron 1 of 7)	intron (NM_023871, intron 1 of 7)	661.0	NM_023871	56086.0	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-63253365-4	chr13	63252855	63253855	+	974.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	13326.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67115765-4	chr10	67115260	67116260	+	974.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11498.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-26438978-3	chr12	26438414	26439414	+	974.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	17538.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.0	13.5	6.5	98.5	223.0	147.5
Merged-chr15-67147556-3	chr15	67147054	67148054	+	974.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 2 of 8)	intron (NM_009177, intron 2 of 8)	29328.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155384093-4	chr1	155383585	155384585	+	974.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011273, intron 2 of 14)	intron (NM_011273, intron 2 of 14)	33359.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23706902-4	chr17	23706420	23707420	+	974.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19416.0	NM_023058	268930.0	Mm.182193	NM_023058	ENSMUSG00000023908	Pkmyt1	6230424P17|AW209059|Myt1	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	9.5	19.0	18.5	7.5	76.5	32.0
Merged-chr10-34235560-4	chr10	34235071	34236071	+	974.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28020.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116625598-4	chr7	116625071	116626071	+	974.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	121202.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34672160-4	chr7	34671661	34672661	+	974.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16652.0	NM_001360818	233107.0	Mm.76761	NM_146188	ENSMUSG00000030499	Kctd15	BC031749	potassium channel tetramerisation domain containing 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11685575-4	chr11	11685083	11686083	+	974.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301868)	promoter-TSS (NM_001301868)	-342.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-71334230-4	chr14	71333724	71334724	+	974.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	82951.0	NR_046076	100043132.0	Mm.399336	NR_046075	ENSMUSG00000115139	Gm4251	-	predicted gene 4251	ncRNA	0.0	13.0	5.0	2.5	1.0	0.0
Merged-chr1-91187544-4	chr1	91187027	91188027	+	974.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168392, intron 1 of 3)	intron (NM_001168392, intron 1 of 3)	7705.0	NM_001168392	51801.0	Mm.3272	NM_016894	ENSMUSG00000034353	Ramp1	9130218E19Rik	receptor (calcitonin) activity modifying protein 1	protein-coding	6.0	25.5	13.0	13.5	6.0	11.5
Merged-chr1-36589684-2	chr1	36589184	36590184	+	974.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 10 of 14)	intron (NM_001126046, intron 10 of 14)	3648.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61267424-4	chr9	61266893	61267893	+	974.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045334, intron 3 of 4)	intron (NR_045334, intron 3 of 4)	26416.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137935512-2	chr4	137935012	137936012	+	974.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 6 of 19)	(TCTG)n|Simple_repeat|Simple_repeat	-57944.0	NM_001256198	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	2.5	11.0	0.0	5.5	19.0	1.5
Merged-chr18-38192483-2	chr18	38191983	38192983	+	974.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17279.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0.0	2.5	1.5	0.0	9.0	1.5
Merged-chr7-45340417-2	chr7	45339917	45340917	+	974.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029741, intron 28 of 29)	ZP3AR|Satellite|Satellite	5148.0	NM_010473	15464.0	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115085029-2	chr11	115084529	115085529	+	974.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6402.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89088440-2	chr3	89087940	89088940	+	974.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028188, intron 8 of 10)	intron (NM_028188, intron 8 of 10)	1591.0	NM_001083808	72296.0	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-72117731-2	chr2	72117231	72118231	+	974.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355478, intron 1 of 26)	intron (NM_001355478, intron 1 of 26)	63114.0	NM_001204166	56508.0	Mm.196153	NM_019688	ENSMUSG00000049044	Rapgef4	1300003D15Rik|5730402K07Rik|6330581N18Rik|EPAC 2|Epac-2|Epac2|mKIAA4040	Rap guanine nucleotide exchange factor (GEF) 4	protein-coding	11.0	6.0	2.0	7.5	11.0	0.0
Merged-chr5-34535636-2	chr5	34535136	34536136	+	974.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	B1_Mus1|SINE|Alu	-7729.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27005838-4	chr17	27005338	27006338	+	974.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12197.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32556621-4	chr11	32556193	32557193	+	974.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	23427.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	48.0	150.5	104.5	118.0	172.5	139.5
Merged-chr17-5940334-2	chr17	5939834	5940834	+	974.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113353)	promoter-TSS (NM_001113353)	-946.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-52168137-2	chr19	52167637	52168637	+	974.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96160.0	NM_008386	16333.0	Mm.46269	NM_008386	ENSMUSG00000035804	Ins1	Ins-1|Ins2-rs1	insulin I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55822670-4	chr14	55822181	55823181	+	974.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2114.0	NM_001168346	73181.0	Mm.27908	NM_023699	ENSMUSG00000023411	Nfatc4	3110041H08Rik|AW107667|AW546455|Nfat3	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-11160891-2	chr14	11160391	11161391	+	974.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 1 of 9)	intron (NM_001360141, intron 1 of 9)	1144.0	NM_010210	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85092447-2	chr12	85091947	85092947	+	974.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175198, intron 2 of 4)	intron (NM_175198, intron 2 of 4)	3168.0	NM_001361239	73422.0	Mm.311944	NM_175198	ENSMUSG00000042320	Prox2	1700058C01Rik	prospero homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-61344717-4	chr3	61344207	61345207	+	974.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-19800.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69979800-2	chr11	69979300	69980300	+	974.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018740, intron 4 of 8)	intron (NM_018740, intron 4 of 8)	530.0	NM_001253700	54351.0	Mm.13430	NM_018740	ENSMUSG00000018565	Elp5	Derp6|Rai12	elongator acetyltransferase complex subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52567961-2	chr3	52567461	52568461	+	974.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50997.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	0.0	0.0	0.0	0.0	5.0	0.0
Merged-chr6-92987953-3	chr6	92987445	92988445	+	974.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	47363.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	0.0	0.0	1.0	19.5	33.5	7.0
Merged-chr4-59544924-4	chr4	59544416	59545416	+	974.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178164, intron 1 of 13)	intron (NM_178164, intron 1 of 13)	4448.0	NM_178164	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-28959681-3	chr13	28959178	28960178	+	974.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5979.0	NM_009238	20677.0	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64000510-2	chr7	64000010	64001010	+	974.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-61595.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-42881278-2	chr9	42880778	42881778	+	974.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175481, intron 1 of 20)	L1MB3|LINE|L1	63093.0	NM_175481	110637.0	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11818037-2	chr19	11817543	11818543	+	974.5	f0_balb.idr|f0_c57.idr	intron (NM_011502, intron 1 of 10)	MIRb|SINE|MIR	1360.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	34.5	120.5	75.5	75.5	140.0	124.5
Merged-chr9-21299294-2	chr9	21298794	21299794	+	974.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009678, exon 8 of 11)	exon (NM_009678, exon 8 of 11)	-8085.0	NM_009878	12581.0	Mm.29020	NM_009878	ENSMUSG00000096472	Cdkn2d	INK4d|p19|p19INK4d	cyclin dependent kinase inhibitor 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-105766871-2	chr7	105766371	105767371	+	974.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162943, intron 2 of 20)	Tigger17a|DNA|TcMar-Tigger	-14636.0	NM_009906	12751.0	Mm.20837	NM_009906	ENSMUSG00000030894	Tpp1	Cln2|LPIC|TPP-1|TPP-I	tripeptidyl peptidase I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158155790-4	chr2	158155292	158156292	+	974.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9400.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21239145-6	chr11	21238653	21239653	+	974.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_139061, exon 1 of 23)	5' UTR (NM_139061, exon 1 of 23)	121.0	NM_001290628	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	12.0	38.0	21.5	2.0	1.0	0.0
Merged-chr10-8862140-4	chr10	8861650	8862650	+	974.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	L2|LINE|L2	23920.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	2.5	1.0	0.5	0.0	0.0	0.5
Merged-chr4-108406575-4	chr4	108406075	108407075	+	974.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_024198, exon 1 of 3)	exon (NM_024198, exon 1 of 3)	138.0	NM_024198	67305.0	Mm.20164	NM_024198	ENSMUSG00000028597	Gpx7	3110050F08Rik|AI327032|GPX6	glutathione peroxidase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129237039-4	chr6	129236546	129237546	+	974.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040268, intron 2 of 3)	MTE2a|LTR|ERVL-MaLR	999.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57335434-4	chr17	57334921	57335921	+	974.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-23265.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27676927-4	chr2	27676423	27677423	+	974.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011305)	promoter-TSS (NM_011305)	-278.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57504892-4	chr16	57504396	57505396	+	974.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-44346.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	8.0	7.5	7.5	8.0	7.5	7.5
Merged-chr13-110896085-4	chr13	110895571	110896571	+	974.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131194, intron 2 of 2)	intron (NR_131194, intron 2 of 2)	-7428.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109030817-4	chr3	109030317	109031317	+	974.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3210.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22683814-4	chr16	22683310	22684310	+	974.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26579.0	NM_001346673	110197.0	Mm.194986	NM_138650	ENSMUSG00000022861	Dgkg	2900055E17Rik|90kDa|AI854428|Dagk3|E430001K23Rik|mKIAA4131	diacylglycerol kinase, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-44910301-3	chr4	44909794	44910794	+	974.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138590, intron 6 of 8)	intron (NM_138590, intron 6 of 8)	-71100.0	NM_080289	76238.0	Mm.196574	NM_080289	ENSMUSG00000035637	Grhpr	1110059D05Rik|6430629L09Rik|Glxr	glyoxylate reductase/hydroxypyruvate reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72580584-3	chr5	72580100	72581100	+	974.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_174877, exon 1 of 4)	exon (NM_174877, exon 1 of 4)	484.0	NM_174877	317755.0	Mm.11934	NM_174877	ENSMUSG00000063935	Zar1	-	zygote arrest 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-172437778-4	chr2	172437272	172438272	+	974.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2806.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-51372931-4	chr2	51372435	51373435	+	974.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64965.0	NR_130155	73375.0	Mm.396227	NR_130155	ENSMUSG00000086007	1700057H21Rik	-	RIKEN cDNA 1700057H21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96655689-4	chr15	96655177	96656177	+	974.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-12764.0	NM_001166458	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45005929-4	chr14	45005439	45006439	+	974.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17828.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103929983-4	chr14	103929506	103930506	+	974.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85530.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61499355-4	chr11	61498863	61499863	+	974.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-5097.0	NM_001291034	23939.0	Mm.38172	NM_011841	ENSMUSG00000001034	Mapk7	BMK-1|BMK1|ERK-5|ERK5|Erk5-T|PRKM7|b2b2346Clo	mitogen-activated protein kinase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-136368772-4	chr3	136368307	136369307	+	974.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42741.0	NM_001033350	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-93230743-4	chr13	93230227	93231227	+	974.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-38310.0	NM_001361537	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	36.5	67.5	38.5	29.0	33.0	38.0
Merged-chr11-107405803-4	chr11	107405299	107406299	+	974.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	RSINE1|SINE|B4	64921.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	9.5	8.0	15.5	5.5	24.0	18.5
Merged-chr4-132270154-6	chr4	132269650	132270650	+	974.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002865)	promoter-TSS (NR_002865)	36.0	NR_002865	353373.0	Mm.424675	NR_002865		Rnu11	MBII-407|Mirn801|mir-801|mmu-mir-801	U11 small nuclear RNA	snRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-85952117-7	chr10	85951619	85952619	+	974.3843380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145422, intron 3 of 11)	intron (NM_145422, intron 3 of 11)	5674.0	NM_145422	28088.0	Mm.9257	NM_145422	ENSMUSG00000001783	Rtcb	AI255213|AI463255|D10Wsu52e|FAAP|HSPC117	RNA 2',3'-cyclic phosphate and 5'-OH ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-103443720-4	chr12	103443159	103444159	+	974.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281830)	promoter-TSS (NM_001281830)	21.0	NM_029803	76933.0	Mm.271275	NM_029803	ENSMUSG00000079017	Ifi27l2a	2310061N23Rik|Ifi27|Isg12|Isg12(b1)	interferon, alpha-inducible protein 27 like 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147957222-4	chr5	147956721	147957721	+	974.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029920)	promoter-TSS (NM_029920)	-99.0	NM_001359503	77521.0	Mm.244177	NM_029920	ENSMUSG00000029651	Mtus2	5730592G18Rik|A730013O20Rik|AU067634|C130038G02Rik|Cazip|Gm763|mKIAA0774	microtubule associated tumor suppressor candidate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76631287-4	chr11	76630803	76631803	+	974.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-41167.0	NM_177182	320522.0	Mm.131585	NM_177182	ENSMUSG00000044243	Bhlha9	A830053O21Rik|Fingerin	basic helix-loop-helix family, member a9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-113747367-4	chr11	113746877	113747877	+	974.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163346, intron 1 of 1)	intron (NM_001163346, intron 1 of 1)	3783.0	NM_020006	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-33768210-4	chr1	33767697	33768697	+	974.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359274, intron 12 of 13)	intron (NM_001359274, intron 12 of 13)	-10447.0	NM_145392	213539.0	Mm.247037	NM_145392	ENSMUSG00000042215	Bag2	2610042A13Rik|BC016230	BCL2-associated athanogene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14340578-4	chr2	14340111	14341111	+	974.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47787.0	NM_001012305	277468.0	Mm.44662	NM_001012305	ENSMUSG00000036949	Slc39a12	AW046938|Gm731	solute carrier family 39 (zinc transporter), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84110187-4	chr17	84109691	84110691	+	974.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31531.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75686294-4	chr7	75685800	75686800	+	974.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 13 of 36)	intron (NM_029332, intron 13 of 36)	-162038.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60933653-4	chr11	60933120	60934120	+	974.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008928, intron 1 of 11)	intron (NM_008928, intron 1 of 11)	1563.0	NM_008928	26397.0	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31208420-4	chr6	31207918	31208918	+	974.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	intron (NR_110469, intron 1 of 3)	10056.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143526898-4	chr5	143526381	143527381	+	974.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347530, intron 1 of 6)	intron (NM_001347530, intron 1 of 6)	1112.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6074103-4	chr19	6073592	6074592	+	974.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081041, intron 2 of 9)	intron (NM_001081041, intron 2 of 9)	3095.0	NM_001081041	68505.0	Mm.227361	NM_001081041	ENSMUSG00000024799	Vps51	1110014N23Rik|3110057M17Rik|AI837850|Ffr	VPS51 GARP complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131427160-4	chr2	131426663	131427663	+	974.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-64699.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25621403-4	chr2	25620902	25621902	+	974.3583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001109993, exon 2 of 4)	exon (NM_001109993, exon 2 of 4)	600.0	NM_001040130	51875.0	Mm.271147	NM_001040130	ENSMUSG00000026939	Tmem141	1110065P14Rik|AI663999|D2Ertd217e	transmembrane protein 141	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88802445-4	chr10	88801937	88802937	+	974.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175158, intron 18 of 61)	MIR|SINE|MIR	24377.0	NM_175158	70683.0	Mm.29631	NM_175158	ENSMUSG00000004356	Utp20	3830408P06Rik|AA617408|Drim|mDRIM|mDRIN	UTP20 small subunit processome component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86584435-6	chr6	86583980	86584980	+	974.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43694.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-127153558-3	chr6	127153032	127154032	+	974.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040275, intron 1 of 1)	intron (NR_040275, intron 1 of 1)	-2484.0	NM_009829	12444.0	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	0.0	1.5	3.0	0.0	1.5	3.0
Merged-chr10-80694807-4	chr10	80694319	80695319	+	974.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	7001.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135307688-3	chr4	135307189	135308189	+	974.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34929.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-114869538-3	chr14	114869034	114870034	+	974.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37569.0	NR_045661	75822.0	Mm.410813	NR_045661	ENSMUSG00000115320	4930524C18Rik	-	RIKEN cDNA 4930524C18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-22423693-3	chr6	22423149	22424149	+	974.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67568.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89436931-4	chr3	89436385	89437385	+	974.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146131, intron 1 of 10)	intron (NM_146131, intron 1 of 10)	181.0	NM_146131	229534.0	Mm.65906	NM_146131	ENSMUSG00000042613	Pbxip1	4732463H20Rik	pre B cell leukemia transcription factor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31228919-3	chr5	31228434	31229434	+	974.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8389.0	NM_008014	14208.0	Mm.14501	NM_008014	ENSMUSG00000029147	Ppm1g	AI385652|Fin13	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122131298-4	chr5	122130800	122131800	+	974.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183307, intron 2 of 12)	intron (NM_183307, intron 2 of 12)	3593.0	NM_001289811	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	2.0	5.5	0.5	7.5	1.0	2.0
Merged-chr11-98948541-4	chr11	98948038	98949038	+	974.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177302, intron 2 of 9)	L1MB8|LINE|L1	8827.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50074295-4	chr6	50073785	50074785	+	974.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR16B_MM|LTR|ERVK	-35956.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	1.5	6.5	9.0	8.0	27.0	44.5
Merged-chr10-99599561-1	chr10	99599061	99600061	+	974.3333130000001	f0_c57.idr	Intergenic	IAPLTR2_Mm|LTR|ERVK	-9610.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117984777-3	chr2	117984275	117985275	+	974.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	126427.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8816929-4	chr10	8816426	8817426	+	974.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	69144.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132335156-4	chr1	132334659	132335659	+	974.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19034.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108401902-4	chr3	108401382	108402382	+	974.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004177, intron 9 of 33)	intron (NM_001004177, intron 9 of 33)	13612.0	NM_017392	53883.0	Mm.39728	NM_017392	ENSMUSG00000068740	Celsr2	Adgrc2|EGFL2|Flamingo1|flamingo|mKIAA0279|mfmi1	cadherin, EGF LAG seven-pass G-type receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79361425-2	chr15	79361021	79362021	+	974.2999880000001	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001253817, exon 9 of 9)	3' UTR (NM_001253817, exon 9 of 9)	13119.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	1.5	0.5	1.0	0.0	1.0	0.0
Merged-chr10-60388541-4	chr10	60388051	60389051	+	974.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 30 of 68)	intron (NM_001252635, intron 30 of 68)	-11175.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47455523-4	chr6	47454991	47455991	+	974.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355550, intron 1 of 21)	intron (NM_001355550, intron 1 of 21)	734.0	NM_001355550	26965.0	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	Cul-1	cullin 1	protein-coding	26.0	61.0	41.0	29.0	54.0	60.0
Merged-chr9-75630872-4	chr9	75630368	75631368	+	974.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027309, intron 1 of 2)	intron (NM_027309, intron 1 of 2)	5136.0	NM_027309	70082.0	Mm.19119	NM_027309	ENSMUSG00000032184	Lysmd2	2210402C18Rik|AV033872|AW538442	LysM, putative peptidoglycan-binding, domain containing 2	protein-coding	11.0	22.0	26.0	5.5	15.5	13.5
Merged-chr7-29784016-4	chr7	29783524	29784524	+	974.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360207)	promoter-TSS (NM_001360207)	56.0	NM_001360209	22693.0	Mm.292690	NM_013705	ENSMUSG00000047473	Zfp30	2610306P15Rik|Zfp-30	zinc finger protein 30	protein-coding	8.0	16.0	5.0	3.5	22.5	14.5
Merged-chr1-78489199-4	chr1	78488723	78489723	+	974.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102757)	promoter-TSS (NR_102757)	-326.0	NM_011811	23874.0	Mm.17898	NM_011811	ENSMUSG00000026245	Farsb	C76708|Farsa|Farsl|Farslb|Frsb	phenylalanyl-tRNA synthetase, beta subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69699534-4	chr3	69699033	69700033	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22522.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118275242-4	chr11	118274720	118275720	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033528, intron 9 of 20)	intron (NM_001033528, intron 9 of 20)	15024.0	NM_001033528	72344.0	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79059500-4	chr8	79058992	79059992	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 1 of 14)	intron (NM_001294279, intron 1 of 14)	31055.0	NM_178267	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165120526-4	chr1	165120030	165121030	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28600.0	NR_040480	75857.0	Mm.109021	NR_040480	ENSMUSG00000102408	4930568G15Rik	-	RIKEN cDNA 4930568G15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122901853-4	chr5	122901349	122902349	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003953, intron 12 of 22)	intron (NM_001003953, intron 12 of 22)	-1499.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	4.5	19.0	21.0	3.5	18.0	30.5
Merged-chr19-11808636-4	chr19	11808129	11809129	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	10774.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	2.5	16.5	4.0	10.5	14.0	15.0
Merged-chr1-152870967-3	chr1	152870462	152871462	+	974.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005507, intron 1 of 21)	intron (NM_001005507, intron 1 of 21)	31683.0	NM_001359257	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53038814-2	chr4	53038314	53039314	+	974.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 44 of 49)	intron (NM_013454, intron 44 of 49)	26934.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94413213-4	chr11	94412723	94413723	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009783, intron 33 of 35)	intron (NM_009783, intron 33 of 35)	-20247.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-20424315-4	chr8	20423818	20424818	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028428, intron 1 of 5)	CpG	496.0	NR_028428	381598.0	Mm.359054	NM_001024708	ENSMUSG00000071793	2610005L07Rik	2810038F24Rik|6720476A01Rik	cadherin 11 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5568381-4	chr19	5567889	5568889	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033448, exon 1 of 2)	5' UTR (NM_001033448, exon 1 of 2)	365.0	NM_001033448	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44127257-2	chr16	44126757	44127757	+	974.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	L1M2|LINE|L1	12002.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-111059592-4	chr5	111059096	111060096	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	55452.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	4.5	13.0	5.5	8.5	18.5	9.0
Merged-chr11-53810389-2	chr11	53809889	53810889	+	974.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	39916.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106242947-4	chr9	106242445	106243445	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020559, intron 3 of 10)	intron (NM_020559, intron 3 of 10)	4785.0	NM_001291835	11655.0	Mm.290578	NM_020559	ENSMUSG00000032786	Alas1	ALAS|ALAS-N|Alas-1|Alas-h	aminolevulinic acid synthase 1	protein-coding	7.5	35.0	25.5	13.0	17.0	10.0
Merged-chr13-111536607-4	chr13	111536107	111537107	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151444, intron 1 of 1)	intron (NR_151444, intron 1 of 1)	13302.0	NR_151444	102636218.0	Mm.343364	NR_151444	ENSMUSG00000085634	Gm15290	-	predicted gene 15290	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-70855725-4	chr6	70855196	70856196	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313918, intron 1 of 2)	L2|LINE|L2	11181.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-140395963-3	chr2	140395482	140396482	+	974.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028387, intron 1 of 3)	CpG	547.0	NM_028387	72899.0	Mm.229466	NM_028387	ENSMUSG00000068205	Macrod2	1110033L15Rik|2610107G07Rik|2900006F19Rik	MACRO domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134559753-3	chr6	134559285	134560285	+	974.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 1 of 22)	intron (NM_008514, intron 1 of 22)	7128.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	45.0	83.0	76.0	26.0	76.5	60.0
Merged-chr11-75163738-4	chr11	75163189	75164189	+	974.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001098203)	TTS (NM_001098203)	4463.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	3.0	4.5	5.5	3.0	4.5	5.5
Merged-chr14-121798503-4	chr14	121797949	121798949	+	974.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134074)	promoter-TSS (NM_134074)	-715.0	NM_134074	105445.0	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-37871492-4	chr6	37870999	37871999	+	974.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145076, intron 1 of 18)	CpG	688.0	NM_145076	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26505605-4	chr17	26505142	26506142	+	974.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013642)	TTS (NM_013642)	2830.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	43.5	95.5	49.0	44.5	55.5	9.0
Merged-chr1-183297002-5	chr1	183296496	183297496	+	974.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181732)	promoter-TSS (NM_181732)	-64.0	NM_181732	108909.0	Mm.290502	NM_145626	ENSMUSG00000042901	Aida	2610208M17Rik|BC004835	axin interactor, dorsalization associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-93774002-3	chr13	93773488	93774488	+	974.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009712, intron 1 of 7)	intron (NM_009712, intron 1 of 7)	2309.0	NM_009712	11881.0	Mm.300178	NM_009712	ENSMUSG00000042082	Arsb	1110007C02Rik|AI480648|As-1|As-1r|As-1s|As-1t|As1|As1-r|As1-s|As1-t|Asr-1|Ast-1	arylsulfatase B	protein-coding	5.5	0.0	0.0	23.5	39.0	18.0
Merged-chr11-116490422-5	chr11	116489901	116490901	+	974.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026364)	promoter-TSS (NM_026364)	-55.0	NM_026364	67763.0	Mm.25125	NM_026364	ENSMUSG00000015869	Prpsap1	5730409F23Rik|PAP39	phosphoribosyl pyrophosphate synthetase-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120510853-4	chr11	120510350	120511350	+	974.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	19013.0	NM_013770	27376.0	Mm.3991	NM_013770	ENSMUSG00000025792	Slc25a10	Dic	solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76646188-4	chr11	76645667	76646667	+	974.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26303.0	NM_177182	320522.0	Mm.131585	NM_177182	ENSMUSG00000044243	Bhlha9	A830053O21Rik|Fingerin	basic helix-loop-helix family, member a9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-10683302-4	chr8	10682803	10683803	+	974.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	199151.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-84916393-4	chr11	84915893	84916893	+	974.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005223)	promoter-TSS (NM_001005223)	-27.0	NM_001005223	448850.0	Mm.379733	NM_001005223	ENSMUSG00000020526	Znhit3	Myohd1|TRIP-3|Trip3	zinc finger, HIT type 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96812602-4	chr3	96812131	96813131	+	974.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163497, intron 1 of 3)	MIRb|SINE|MIR	1890.0	NM_018767	54215.0	Mm.34693	NM_018767	ENSMUSG00000038304	Cd160	AU045688|By55	CD160 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75268744-4	chr11	75268227	75269227	+	974.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177708)	TTS (NM_177708)	74734.0	NM_177708	237847.0	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-52525058-4	chr12	52524555	52525555	+	974.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009706, intron 1 of 5)	intron (NM_009706, intron 1 of 5)	8978.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	9.5	11.5	6.0	9.0	7.5	10.5
Merged-chr18-38845754-2	chr18	38845254	38846254	+	974.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010197, intron 3 of 3)	intron (NM_010197, intron 3 of 3)	-46702.0	NM_001033789	545253.0	Mm.244585	NM_001033789	ENSMUSG00000036452	Gm5820	EG545253	predicted gene 5820	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-93355291-4	chr13	93354809	93355809	+	974.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_147176, intron 4 of 9)	intron (NM_147176, intron 4 of 9)	47275.0	NM_152134	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119299056-2	chr11	119298519	119299519	+	974.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_138669, intron 1 of 11)	B1_Mus2|SINE|Alu	1024.0	NM_138669	192170.0	Mm.197555	NM_138669	ENSMUSG00000025580	Eif4a3	2400003O03Rik|Ddx48|eIF4A-III|mKIAA0111	eukaryotic translation initiation factor 4A3	protein-coding	5.0	10.5	26.5	18.0	54.0	22.5
Merged-chr2-90939955-4	chr2	90939470	90940470	+	974.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017368)	promoter-TSS (NM_017368)	-427.0	NM_198683	13046.0	Mm.29495	NM_017368	ENSMUSG00000005506	Celf1	1600010O03Rik|AA407467|Brunol2|CUG-BP|CUG-BP1|CUGBP|Cugbp1|D2Wsu101e|HNAB50|NAB50	CUGBP, Elav-like family member 1	protein-coding	0.5	14.0	11.5	1.5	23.0	10.5
Merged-chr5-114685584-2	chr5	114685084	114686084	+	974.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_019821, intron 1 of 4)	intron (NM_019821, intron 1 of 4)	5351.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	0.0	1.0	0.0	2.5	0.0	1.5
Merged-chr3-129970110-4	chr3	129969551	129970551	+	974.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001293644, exon 1 of 7)	exon (NM_001293644, exon 1 of 7)	155.0	NM_025779	66815.0	Mm.31056	NM_025779	ENSMUSG00000027994	Mcub	9030408N13Rik|Ccdc109b	mitochondrial calcium uniporter dominant negative beta subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88465277-4	chr3	88464783	88465783	+	974.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4101.0	NM_001163489	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134534502-4	chr4	134534026	134535026	+	974.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029759, intron 1 of 6)	CpG	570.0	NM_001355188	76824.0	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	13.5	22.5	13.0	2.5	19.5	12.5
Merged-chr11-44601122-3	chr11	44600618	44601618	+	974.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER44B|DNA|TcMar-Tigger	14801.0	NR_126460	75389.0	Mm.261421	NR_126460	ENSMUSG00000086501	4930597A21Rik	-	RIKEN cDNA 4930597A21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120463956-6	chr6	120463415	120464415	+	974.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 1 of 12)	intron (NM_008359, intron 1 of 12)	718.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46630533-4	chr4	46630028	46631028	+	974.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198664, intron 3 of 12)	intron (NM_198664, intron 3 of 12)	19671.0	NM_198664	381605.0	Mm.331595	NM_198664	ENSMUSG00000039813	Tbc1d2	A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1	TBC1 domain family, member 2	protein-coding	8.5	2.0	6.5	6.5	14.0	10.5
Merged-chr11-6561047-4	chr11	6560562	6561562	+	974.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190344, intron 1 of 9)	intron (NM_001190344, intron 1 of 9)	879.0	NM_001190344	216527.0	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	10.0	44.0	14.0	26.0	35.5	28.0
Merged-chr13-100678047-2	chr13	100677547	100678547	+	974.083374	f1_balb.idr|f1_c57bl6.idr	exon (NM_183115, exon 2 of 12)	exon (NM_183115, exon 2 of 12)	8566.0	NM_001168386	76041.0	Mm.23977	NM_183115	ENSMUSG00000048924	Ccdc125	5830436D01Rik|AL023012	coiled-coil domain containing 125	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43058898-4	chr4	43058393	43059393	+	974.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310758)	promoter-TSS (NM_001310758)	-60.0	NM_021468	22249.0	Mm.128892	NM_021468	ENSMUSG00000028456	Unc13b	Munc13-1|Munc13-2|Unc13a|Unc13h1|Unc13h2	unc-13 homolog B (C. elegans)	protein-coding	1.5	1.5	3.0	0.0	0.0	1.0
Merged-chr19-11469452-4	chr19	11468947	11469947	+	974.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028595)	promoter-TSS (NM_028595)	79.0	NM_028595	73656.0	Mm.440719	NM_028595	ENSMUSG00000079419	Ms4a6c	2200009H22Rik|2210417N07Rik	membrane-spanning 4-domains, subfamily A, member 6C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45530086-4	chr4	45529696	45530696	+	974.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033306, exon 1 of 6)	exon (NM_001033306, exon 1 of 6)	632.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	24.5	58.5	37.0	49.5	39.0	33.0
Merged-chr19-40629122-4	chr19	40628616	40629616	+	974.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	16750.0	NM_001304721	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	6.0	6.5	37.5	15.5	28.0	52.0
Merged-chr13-56631524-4	chr13	56631041	56632041	+	974.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155548, intron 10 of 16)	intron (NR_155548, intron 10 of 16)	21955.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37419621-4	chr1	37419131	37420131	+	974.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_198006, exon 3 of 3)	3' UTR (NM_198006, exon 3 of 3)	10472.0	NM_198006	76178.0	Mm.28085	NM_198006	ENSMUSG00000026112	Coa5	1700001A24Rik|6330578E17Rik|Pet191	cytochrome C oxidase assembly factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111056126-4	chr9	111055628	111056628	+	974.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001302376, exon 3 of 3)	exon (NM_001302376, exon 3 of 3)	1116.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	25.5	60.5	35.5	27.0	77.5	47.0
Merged-chr8-26888257-4	chr8	26887748	26888748	+	974.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-63825.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44607472-4	chr10	44606972	44607972	+	974.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-148724.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48825695-4	chr17	48825199	48826199	+	974.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-106883.0	NM_027452	70530.0	Mm.133607	NM_027452	ENSMUSG00000040490	Lrfn2	5730420O05Rik|SALM1|mKIAA1246	leucine rich repeat and fibronectin type III domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-22363752-4	chr6	22363233	22364233	+	974.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7652.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-109058413-8	chr9	109057987	109058987	+	974.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026381)	TTS (NM_026381)	764.0	NM_001012236	22040.0	Mm.439964	NM_011637	ENSMUSG00000049734	Trex1	AU041952	three prime repair exonuclease 1	protein-coding	19.5	42.0	35.5	24.0	43.0	32.5
Merged-chr1-190911096-3	chr1	190910617	190911617	+	974.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178775, intron 1 of 14)	intron (NM_178775, intron 1 of 14)	653.0	NM_178775	320119.0	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	90.0	172.0	124.0	100.0	202.0	208.5
Merged-chr16-31192021-4	chr16	31191515	31192515	+	974.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030138, intron 1 of 22)	intron (NM_030138, intron 1 of 22)	9223.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-72476176-4	chr2	72475653	72476653	+	974.044067	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025866)	promoter-TSS (NM_025866)	-66.0	NM_025866	66953.0	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-99211188-4	chr13	99210667	99211667	+	974.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	26344.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99979718-4	chr12	99979203	99980203	+	974.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	Lx7|LINE|L1	15204.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44104600-4	chr19	44104106	44105106	+	974.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162410, intron 1 of 20)	intron (NM_001162410, intron 1 of 20)	2871.0	NM_007700	12675.0	Mm.3996	NM_007700	ENSMUSG00000025199	Chuk	AI256658|Chuk1|Fbx24|Fbxo24|IKBKA|IKK alpha|IKK1|Ikka|NFKBIKA	conserved helix-loop-helix ubiquitous kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143056719-4	chr5	143056211	143057211	+	974.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	56309.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110678200-4	chr9	110677713	110678713	+	974.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	RLTR28|LTR|ERVL	21710.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13841568-4	chr8	13841068	13842068	+	974.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3479.0	NM_153093	231201.0	Mm.423959	NM_153093	ENSMUSG00000057116	AF366264	Susp4	cDNA sequence AF366264	protein-coding	1.5	13.5	6.0	0.0	10.5	9.0
Merged-chr13-55693497-4	chr13	55693005	55694005	+	974.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181278, intron 1 of 1)	CpG	381.0	NM_181278	78521.0	Mm.28449	NM_181278	ENSMUSG00000045767	B230219D22Rik	AA119856|D530037I19Rik	RIKEN cDNA B230219D22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-90231803-4	chr11	90231296	90232296	+	974.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER103C|DNA|hAT-Charlie	-17680.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83081693-7	chr17	83081172	83082172	+	974.040833	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3447.0	NR_045094	100503434.0	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25424655-2	chr7	25424155	25425155	+	974.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_015569, intron 4 of 6)	intron (NR_015569, intron 4 of 6)	-11769.0	NM_153576	232983.0	Mm.10545	NM_153576	ENSMUSG00000060188	Cxcl17	VCC-1|Vcc1	chemokine (C-X-C motif) ligand 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-69706076-4	chr9	69705567	69706567	+	974.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54873.0	NM_022378	64290.0	Mm.440890	NM_022378	ENSMUSG00000059246	Foxb1	C43|Fkh5|Foxb1a|Foxb1b|Hfh-e5.1|Mf3|Twh	forkhead box B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91133735-2	chr2	91133235	91134235	+	974.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008653, intron 24 of 31)	B3|SINE|B2	15591.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	2.5	0.0	0.0	2.5	10.5	0.0
Merged-chr17-34262291-1	chr17	34261791	34262791	+	974.0	f1_balb.idr	promoter-TSS (NM_207105)	promoter-TSS (NM_207105)	-936.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	210.5	624.5	429.5	225.0	670.0	367.5
Merged-chr9-99180995-2	chr9	99180495	99181495	+	974.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-40784.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	13.0	43.5	30.0	10.5	55.5	23.5
Merged-chr4-16168611-4	chr4	16168097	16169097	+	974.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045765, intron 1 of 6)	intron (NR_045765, intron 1 of 6)	4487.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80136161-2	chr12	80135661	80136661	+	974.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3317.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr13-43482008-4	chr13	43481508	43482508	+	974.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1035.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	33.5	29.0	42.0	33.5	29.0	42.5
Merged-chr10-12841718-3	chr10	12841171	12842171	+	974.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 1 of 73)	B4A|SINE|B4	20064.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	2.5	4.5	1.0	3.5	1.0	3.5
Merged-chr12-51687669-2	chr12	51687169	51688169	+	974.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172098, intron 1 of 15)	ID_B1|SINE|B4	-3297.0	NM_001329699	11782.0	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-94583061-3	chr6	94582550	94583550	+	974.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026255, intron 6 of 9)	intron (NM_026255, intron 6 of 9)	23365.0	NR_106008	102466992.0		NR_106008	ENSMUSG00000098531	Mir7041	Gm27872|mmu-mir-7041	microRNA 7041	ncRNA	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr8-23157415-2	chr8	23156915	23157915	+	974.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029002, intron 2 of 2)	intron (NM_029002, intron 2 of 2)	4144.0	NM_029002	74561.0	Mm.290028	NM_029002	ENSMUSG00000063672	Nkx6-3	9130417I07Rik|Nkx6.3	NK6 homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30594971-4	chr2	30594464	30595464	+	974.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030137)	promoter-TSS (NM_030137)	-80.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34906286-2	chr6	34905786	34906786	+	974.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013366, intron 4 of 14)	B3A|SINE|B2	4545.0	NM_001013366	101240.0	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123916401-2	chr4	123915901	123916901	+	974.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-1032.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	4.5	17.0	16.0	2.0	11.5	13.5
Merged-chr2-119305178-2	chr2	119304678	119305678	+	974.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16436.0	NM_172269	228545.0	Mm.294761	NM_172269	ENSMUSG00000034216	Vps18	9930024E13Rik	VPS18 CORVET/HOPS core subunit	protein-coding	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr9-102982610-4	chr9	102982114	102983114	+	974.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-25875.0	NM_033314	24059.0	Mm.207106	NM_033314	ENSMUSG00000032548	Slco2a1	2310021C19Rik|Pgt|Slc21a2|mPgt	solute carrier organic anion transporter family, member 2a1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152770493-2	chr2	152769998	152770998	+	974.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289739, intron 2 of 4)	B1_Mus1|SINE|Alu	16325.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149167324-4	chr4	149166845	149167845	+	974.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081274)	promoter-TSS (NM_001081274)	-640.0	NM_001081274	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67843946-2	chr5	67843446	67844446	+	974.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	3485.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48337048-4	chr17	48336546	48337546	+	974.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9355.0	NM_031254	83433.0	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11376609-3	chr19	11376128	11377128	+	974.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310331, intron 1 of 6)	intron (NM_001310331, intron 1 of 6)	1140.0	NM_001310331	666907.0		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43960501-4	chr4	43960013	43961013	+	974.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027450, intron 1 of 4)	B4A|SINE|B4	2811.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-55888795-2	chr7	55888295	55889295	+	974.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 11 of 30)	intron (NM_011370, intron 11 of 30)	46724.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4184703-2	chr11	4184203	4185203	+	974.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-2130.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-135188770-1	chr6	135188270	135189270	+	974.0	f1_c57bl6.idr	intron (NR_040296, intron 1 of 4)	B4A|SINE|B4	290.0	NR_040296	100502888.0	Mm.437844	NR_040296	ENSMUSG00000108239	Gm19434	-	predicted gene, 19434	ncRNA	10.0	49.0	28.0	25.5	39.0	31.5
Merged-chr15-83173054-1	chr15	83172554	83173554	+	974.0	f0_balb.idr	promoter-TSS (NM_029787)	promoter-TSS (NM_029787)	-846.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-33847746-2	chr9	33847246	33848246	+	974.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-194625.0	NR_040744	77119.0	Mm.367930	NR_040744	ENSMUSG00000098758	7630403G23Rik	TH-cre|Tg(Th-cre)1Tmd	RIKEN cDNA 7630403G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-103927617-4	chr5	103927101	103928101	+	974.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16342.0	NM_001359986	246293.0	Mm.179871	NM_178741	ENSMUSG00000029312	Klhl8	2310001P09Rik|D5Ertd431e	kelch-like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-15888623-2	chr16	15888123	15889123	+	974.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_146068)	TTS (NM_146068)	1337.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3660606-1	chr4	3660106	3661106	+	974.0	f1_c57bl6.idr	intron (NR_040643, intron 3 of 3)	L1_Mus2|LINE|L1	4100.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	21.0	27.5	9.5	10.5	25.0	14.5
Merged-chr11-96318602-4	chr11	96318076	96319076	+	973.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010459, exon 1 of 2)	5' UTR (NM_010459, exon 1 of 2)	309.0	NM_010459	15412.0	Mm.3546	NM_010459	ENSMUSG00000038692	Hoxb4	Hox-2.6	homeobox B4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13796811-4	chr16	13796322	13797322	+	973.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039521, intron 10 of 17)	intron (NM_001039521, intron 10 of 17)	16123.0	NM_001039521	106298.0	Mm.288606	NM_001039521	ENSMUSG00000022682	Rrn3	AL023001|E130302O19Rik|R75565|TIF-1A|Tif1a	RRN3 RNA polymerase I transcription factor homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21321780-4	chr11	21321284	21322284	+	973.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_139061)	TTS (NM_139061)	22891.0	NR_035454	100316753.0		NR_035454	ENSMUSG00000089555	Mir1933	mir-1933|mmu-mir-1933	microRNA 1933	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105685085-4	chr5	105684590	105685590	+	973.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14879.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr2-12382812-4	chr2	12382309	12383309	+	973.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355537, intron 8 of 13)	intron (NM_001355537, intron 8 of 13)	36651.0	NM_001355537	66960.0	Mm.34059	NM_024185	ENSMUSG00000026767	Mindy3	1810041E18Rik|2310047O13Rik|5830410F13Rik|AI447827|AW111958|Fam188a	MINDY lysine 48 deubiquitinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79524862-4	chr15	79524373	79525373	+	973.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_134090, exon 3 of 5)	exon (NM_134090, exon 3 of 5)	8044.0	NM_152806	67040.0	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	4.0	2.0	6.5	4.0	6.0	3.0
Merged-chr12-17711585-4	chr12	17711089	17712089	+	973.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	MTC|LTR|ERVL-MaLR	20780.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	42.5	199.5	132.0	54.0	186.5	133.5
Merged-chr9-60794429-3	chr9	60793907	60794907	+	973.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028283)	promoter-TSS (NM_028283)	-35.0	NM_001357408	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54900108-4	chr18	54899620	54900620	+	973.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 3 of 8)	intron (NM_001360787, intron 3 of 8)	90060.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29485279-4	chr6	29484770	29485770	+	973.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029985, intron 32 of 37)	intron (NM_001029985, intron 32 of 37)	13833.0	NM_001145360	668210.0	Mm.420607	NM_001145360	ENSMUSG00000090685	Gm9047	EG668210	predicted gene 9047	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44459468-4	chr10	44459052	44460052	+	973.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007548)	promoter-TSS (NM_007548)	-804.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32607507-4	chr11	32606981	32607981	+	973.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 12 of 18)	L1MD|LINE|L1	-35074.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	2.0	2.0	1.5	8.0	1.0	1.0
Merged-chr10-67566373-4	chr10	67565854	67566854	+	973.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3654.0	NR_155445	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153346421-4	chr2	153345916	153346916	+	973.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040318)	promoter-TSS (NR_040318)	277.0	NM_001039939	228790.0	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69448586-2	chr12	69448086	69449086	+	973.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26964.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	44.5	133.0	64.0	42.0	113.0	90.5
Merged-chr19-33007791-3	chr19	33007290	33008290	+	973.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-149322.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62429856-4	chr4	62429362	62430362	+	973.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153504, intron 2 of 2)	intron (NM_153504, intron 2 of 2)	4864.0	NM_153504	76072.0	Mm.169565	NM_153504	ENSMUSG00000063851	Rnf183	5830442J12Rik	ring finger protein 183	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62229973-4	chr18	62229472	62230472	+	973.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49872.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	7.0	20.0	18.0	13.0	3.5	2.5
Merged-chr6-17652327-4	chr6	17651799	17652799	+	973.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007604, intron 3 of 9)	ORR1E|LTR|ERVL-MaLR	15289.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	2.0	22.5	9.0	2.0	22.5	9.5
Merged-chr13-98810383-4	chr13	98809885	98810885	+	973.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172591, intron 1 of 25)	intron (NM_172591, intron 1 of 25)	5064.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	36.0	38.0	51.5	35.0	49.5	43.0
Merged-chr3-19310232-4	chr3	19309751	19310751	+	973.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122759, intron 1 of 12)	intron (NM_001122759, intron 1 of 12)	1071.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68475407-4	chr11	68474885	68475885	+	973.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 2 of 18)	intron (NM_177320, intron 2 of 18)	-27634.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98831664-4	chr10	98831160	98832160	+	973.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82982.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133651670-4	chr4	133651194	133652194	+	973.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J-int|LTR|ERVL-MaLR	-18265.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	58.5	130.5	104.0	58.0	100.0	114.0
Merged-chr3-30904812-4	chr3	30904304	30905304	+	973.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001165955, exon 14 of 14)	3' UTR (NM_001165955, exon 14 of 14)	48854.0	NM_001286994	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25427088-4	chr2	25426585	25427585	+	973.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013524)	TTS (NM_013524)	-1589.0	NM_007379	11305.0	Mm.2210	NM_007379	ENSMUSG00000026944	Abca2	AI413825|Abc2|D2H0S1474E|mKIAA1062	ATP-binding cassette, sub-family A (ABC1), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114906878-4	chr11	114906389	114907389	+	973.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	16848.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134615449-4	chr6	134614940	134615940	+	973.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026345, intron 3 of 3)	intron (NM_026345, intron 3 of 3)	17048.0	NM_026345	67729.0	Mm.57648	NM_026345	ENSMUSG00000032718	Mansc1	9130403P13Rik	MANSC domain containing 1	protein-coding	21.5	24.0	9.5	23.5	31.5	16.5
Merged-chr7-45175046-2	chr7	45174546	45175546	+	973.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_182993, exon 12 of 12)	3' UTR (NM_182993, exon 12 of 12)	1743.0	NR_106022	102465638.0		NR_106022	ENSMUSG00000106470	Mir7055	mmu-mir-7055	microRNA 7055	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117325736-4	chr11	117325260	117326260	+	973.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-5955.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80112103-2	chr12	80111608	80112608	+	973.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007564, intron 1 of 1)	intron (NM_007564, intron 1 of 1)	905.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	21.0	49.0	34.5	33.5	76.0	37.0
Merged-chr16-93454422-2	chr16	93453922	93454922	+	973.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_040494, intron 1 of 2)	intron (NR_040494, intron 1 of 2)	4450.0	NR_040494	72264.0	Mm.396204	NR_040494	ENSMUSG00000099968	1700029J03Rik	-	RIKEN cDNA 1700029J03 gene	ncRNA	0.5	2.5	0.0	0.5	1.5	0.0
Merged-chr8-104103665-4	chr8	104103158	104104158	+	973.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 1 of 11)	intron (NM_009868, intron 1 of 11)	2033.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165770428-4	chr1	165769926	165770926	+	973.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149310, intron 3 of 4)	intron (NR_149310, intron 3 of 4)	6668.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20212866-4	chr13	20212375	20213375	+	973.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 4 of 21)	MIRb|SINE|MIR	122368.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	14.0	24.5	17.0	7.5	10.0	4.0
Merged-chr3-158077582-4	chr3	158077094	158078094	+	973.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40912.0	NM_001289524	67144.0	Mm.358704	NM_024194	ENSMUSG00000063052	Lrrc40	2610040E16Rik|AI837674	leucine rich repeat containing 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8982547-4	chr3	8982086	8983086	+	973.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-18440.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	28.0	80.0	58.5	14.0	55.5	32.5
Merged-chr17-29497223-4	chr17	29496692	29497692	+	973.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6147.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	5.5	0.5	7.0	1.5	0.5	2.5
Merged-chr15-57693199-4	chr15	57692712	57693712	+	973.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1455.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147337031-2	chr4	147336531	147337531	+	973.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	L1_Mus1|LINE|L1	161165.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103815746-3	chr14	103815243	103816243	+	973.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007904, exon 7 of 7)	3' UTR (NM_007904, exon 7 of 7)	27958.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-92668436-4	chr13	92667916	92668916	+	973.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172588, intron 2 of 11)	intron (NM_172588, intron 2 of 11)	57278.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44991144-4	chr16	44990638	44991638	+	973.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47460.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21194526-4	chr14	21194022	21195022	+	973.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134079, intron 4 of 10)	MER76|LTR|ERVL	118370.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83732962-4	chr17	83732469	83733469	+	973.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 3 of 16)	B3A|SINE|B2	26806.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80706616-4	chr17	80706122	80707122	+	973.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360278, intron 1 of 33)	intron (NM_001360278, intron 1 of 33)	21403.0	NM_001360278	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101974680-4	chr15	101974174	101975174	+	973.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20387.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58280686-4	chr9	58280176	58281176	+	973.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30|LTR|ERV1	27512.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-82513301-4	chr4	82512843	82513843	+	973.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_137202, intron 1 of 1)	CpG	5354.0	NR_137202	102635783.0	Mm.41666	NR_137202		Gm11266	-	predicted gene 11266	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54965398-4	chr11	54964907	54965907	+	973.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-2467.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-69586701-4	chr18	69586191	69587191	+	973.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	240531.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191186002-7	chr1	191185531	191186531	+	973.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2698.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46349041-4	chr19	46348559	46349559	+	973.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040418)	promoter-TSS (NR_040418)	-71.0	NR_040418	75579.0	Mm.436708	NR_040418		2310034G01Rik	-	RIKEN cDNA 2310034G01 gene	ncRNA	9.5	1.5	4.5	0.0	1.5	2.0
Merged-chr13-103921553-4	chr13	103921076	103922076	+	973.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289474)	promoter-TSS (NM_001289474)	-990.0	NM_001005868	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-73160308-4	chr11	73159804	73160804	+	973.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033321)	promoter-TSS (NM_033321)	-226.0	NM_033321	94045.0	Mm.156893	NM_033321	ENSMUSG00000005950	P2rx5	P2X5	purinergic receptor P2X, ligand-gated ion channel, 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133196406-2	chr4	133195879	133196879	+	973.785706	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105984)	TTS (NR_105984)	724.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	4.0	2.0	3.5	9.0	4.0	8.5
Merged-chr15-93379476-3	chr15	93378977	93379977	+	973.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	18857.0	NM_001347097	67197.0	Mm.293181	NM_026025	ENSMUSG00000022635	Zcrb1	2700088M22Rik|Madp-1	zinc finger CCHC-type and RNA binding motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92398378-4	chr5	92397874	92398874	+	973.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181728, intron 2 of 7)	intron (NM_181728, intron 2 of 7)	10240.0	NM_001310665	109979.0	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr4-99716101-2	chr4	99715601	99716601	+	973.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081264, intron 1 of 14)	B1F2|SINE|Alu	471.0	NM_001081264	320438.0	Mm.32408	NM_001081264	ENSMUSG00000073792	Alg6	E230028F23Rik	asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-20509405-4	chr3	20508917	20509917	+	973.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-142240.0	NM_175086	11608.0	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141165033-4	chr7	141164519	141165519	+	973.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172100, intron 2 of 9)	intron (NM_001172100, intron 2 of 9)	3667.0	NM_001172101	107702.0	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-76409583-4	chr6	76409087	76410087	+	973.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	-832890.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168956056-3	chr2	168955538	168956538	+	973.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009564)	promoter-TSS (NM_009564)	-451.0	NM_009564	22722.0	Mm.2095	NM_009564	ENSMUSG00000027551	Zfp64	-	zinc finger protein 64	protein-coding	35.5	84.0	41.0	27.5	69.0	32.5
Merged-chr16-17276302-4	chr16	17275808	17276808	+	973.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177473)	promoter-TSS (NM_177473)	8.0	NM_177473	224019.0	Mm.246388	NM_177473	ENSMUSG00000055692	Tmem191c	4933405M22Rik|D16Bwg1494e|MNCb-4137	transmembrane protein 191C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107983794-2	chr9	107983294	107984294	+	973.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026597)	TTS (NM_026597)	2122.0	NM_026597	68176.0	Mm.76166	NM_026597	ENSMUSG00000042106	Fam212a	6230427J02Rik|Inka1	family with sequence similarity 212, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155367823-4	chr2	155367354	155368354	+	973.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-10430.0	NM_001004721	228812.0	Mm.5434	NM_001004721	ENSMUSG00000038383	Pigu	5430426F17Rik|BC028278|Cdc91l1	phosphatidylinositol glycan anchor biosynthesis, class U	protein-coding	37.0	85.0	63.0	21.0	59.5	27.5
Merged-chr3-41375374-3	chr3	41374877	41375877	+	973.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	117822.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31657572-2	chr17	31657072	31658072	+	973.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_024187, intron 1 of 7)	B3A|SINE|B2	1182.0	NM_024187	108121.0	Mm.379289	NM_024187	ENSMUSG00000061613	U2af1	2010107D16Rik	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69924270-2	chr11	69923770	69924770	+	973.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2312.0	NM_001166593	276770.0	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-65470781-4	chr16	65470303	65471303	+	973.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-49826.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	0.0	4.5	4.5	2.5	0.0	0.5
Merged-chr6-83417549-7	chr6	83417066	83418066	+	973.738098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347313, intron 3 of 11)	B1_Mus2|SINE|Alu	-16464.0	NR_105793	102465194.0		NR_105793	ENSMUSG00000099045	Mir6374	Gm27292|mmu-mir-6374	microRNA 6374	ncRNA	34.0	75.0	64.5	18.5	55.5	38.5
Merged-chr4-139741937-3	chr4	139741448	139742448	+	973.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011039, intron 8 of 8)	MTD|LTR|ERVL-MaLR	88410.0	NM_031873	83770.0	Mm.190612	NM_031873	ENSMUSG00000028738	Tas1r2	Gpr71|T1r2|TR2	taste receptor, type 1, member 2	protein-coding	12.5	45.5	71.0	2.0	6.0	8.5
Merged-chr17-27819480-2	chr17	27818942	27819942	+	973.714294	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033279, intron 1 of 4)	intron (NM_001033279, intron 1 of 4)	1100.0	NM_001033279	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	46.5	65.0	46.0	33.5	84.0	80.0
Merged-chr16-36718670-4	chr16	36718222	36719222	+	973.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285791, intron 5 of 6)	intron (NM_001285791, intron 5 of 6)	24744.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0.0	0.5	0.0	10.5	5.0	4.5
Merged-chr19-44591294-4	chr19	44590797	44591797	+	973.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28443.0	NM_176958	319594.0	Mm.145278	NM_176958	ENSMUSG00000036450	Hif1an	2310046M24Rik|A830014H24Rik|FIH|FIH1	hypoxia-inducible factor 1, alpha subunit inhibitor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34662230-4	chr19	34661744	34662744	+	973.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	21355.0	NM_008331	15957.0	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-4041985-4	chr10	4041491	4042491	+	973.7083130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 17 of 27)	intron (NM_001170785, intron 17 of 27)	68916.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	5.0	4.5	8.0	3.0	3.5	1.0
Merged-chr5-115532135-4	chr5	115531644	115532644	+	973.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	25468.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116093867-4	chr11	116093364	116094364	+	973.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6869.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-17748880-3	chr18	17748422	17749422	+	973.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-167932.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57605692-3	chr16	57605240	57606240	+	973.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025599, intron 1 of 9)	intron (NM_025599, intron 1 of 9)	1127.0	NM_025599	66497.0	Mm.425976	NM_025599	ENSMUSG00000022748	Cmss1	1110001A06Rik|2610528E23Rik|4930572F24Rik|AV099812|AV122629	cms small ribosomal subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166773804-2	chr2	166773304	166774304	+	973.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19963.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73462546-3	chr2	73462057	73463057	+	973.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-8668.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100609981-4	chr12	100609486	100610486	+	973.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153587, intron 5 of 17)	intron (NM_153587, intron 5 of 17)	-89164.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-186703703-4	chr1	186703210	186704210	+	973.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001329107, intron 1 of 7)	intron (NM_001329107, intron 1 of 7)	2279.0	NM_009367	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30796288-2	chr5	30795788	30796788	+	973.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001356948, exon 13 of 13)	exon (NM_001356948, exon 13 of 13)	-18353.0	NM_133350	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167700954-4	chr2	167700432	167701432	+	973.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9755.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85526261-2	chr8	85525761	85526761	+	973.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173866, exon 12 of 12)	3' UTR (NM_173866, exon 12 of 12)	29010.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	1.5	0.5	1.5	6.5	0.5	4.5
Merged-chr3-57749054-4	chr3	57748498	57749498	+	973.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357080, intron 2 of 10)	intron (NM_001357080, intron 2 of 10)	12941.0	NR_130743	24017.0	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-7278300-4	chr7	7277786	7278786	+	973.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003555)	promoter-TSS (NR_003555)	3.0	NR_003555	76229.0	Mm.387947	NM_001113468	ENSMUSG00000095730	Vmn2r29	6430701C03Rik	vomeronasal 2, receptor 29	protein-coding	9.0	14.5	22.5	7.0	4.0	18.0
Merged-chr19-37509928-4	chr19	37509439	37510439	+	973.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40479.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	7.0	16.0	5.0	1.0	9.0	12.0
Merged-chr4-106529942-4	chr4	106529441	106530441	+	973.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31097.0	NM_053272	74754.0	Mm.133370	NM_053272	ENSMUSG00000034926	Dhcr24	2310076D10Rik|5830417J06Rik|mKIAA0018	24-dehydrocholesterol reductase	protein-coding	0.0	2.0	0.0	0.0	2.0	0.0
Merged-chr2-65391532-4	chr2	65391014	65392014	+	973.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-27114.0	NR_105755	102466151.0		NR_105755	ENSMUSG00000099184	Mir6337	Gm27877|mmu-mir-6337	microRNA 6337	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-33932075-4	chr11	33931590	33932590	+	973.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190886, intron 1 of 7)	intron (NM_001190886, intron 1 of 7)	-30923.0	NM_031169	16533.0	Mm.6206	NM_031169	ENSMUSG00000020155	Kcnmb1	BKbeta1	potassium large conductance calcium-activated channel, subfamily M, beta member 1	protein-coding	0.0	0.5	4.0	0.0	2.0	5.0
Merged-chr10-19570389-4	chr10	19569910	19570910	+	973.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21539.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	47.0	93.5	56.5	29.0	90.0	68.0
Merged-chr4-132805612-6	chr4	132805184	132806184	+	973.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR42-int|LTR|ERVK	-9320.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97942578-4	chr11	97942091	97943091	+	973.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163608, intron 7 of 13)	intron (NM_001163608, intron 7 of 13)	43855.0	NM_028199	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	2.5	5.0	6.5	2.5	5.0	7.5
Merged-chr16-29991330-4	chr16	29990734	29991734	+	973.6124880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12110.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	8.5	4.0	6.5	4.0	11.0	5.0
Merged-chr3-75743826-3	chr3	75743323	75744323	+	973.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88092.0	NR_040539	69193.0	Mm.374088	NR_040539	ENSMUSG00000099370	Platr10	2410007B07Rik	pluripotency associated transcript 10	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-78048602-4	chr18	78048099	78049099	+	973.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001101038, exon 3 of 6)	exon (NM_001101038, exon 3 of 6)	8669.0	NM_001101038	620235.0	Mm.35607	NM_001101038	ENSMUSG00000091055	Siglec15	Cd33l3|EG620235|SIGLEC-I	sialic acid binding Ig-like lectin 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19217719-4	chr7	19217224	19218224	+	973.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175668, intron 1 of 1)	ID4_|SINE|ID	5186.0	NM_175668	319197.0	Mm.135984	NM_175668	ENSMUSG00000044317	Gpr4	-	G protein-coupled receptor 4	protein-coding	0.0	1.5	1.5	3.5	2.5	2.0
Merged-chr2-22965619-4	chr2	22965111	22966111	+	973.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 3 of 10)	intron (NM_001077190, intron 3 of 10)	70089.0	NM_001355467	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-156228017-4	chr4	156227511	156228511	+	973.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008233, intron 2 of 15)	intron (NM_001008233, intron 2 of 15)	531.0	NM_001008233	231002.0	Mm.423124	NM_001008233	ENSMUSG00000078485	Plekhn1	BC025458	pleckstrin homology domain containing, family N member 1	protein-coding	11.0	28.0	27.5	12.0	26.0	15.5
Merged-chr7-140956604-4	chr7	140956071	140957071	+	973.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030694)	promoter-TSS (NM_030694)	-610.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78277496-3	chr11	78276991	78277991	+	973.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002004, intron 24 of 38)	intron (NM_001002004, intron 24 of 38)	-13350.0	NM_001287206	216976.0	Mm.477146	NM_001045522		BC030499	BC037104|Sgk494	cDNA sequence BC030499	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27291155-4	chr3	27290658	27291658	+	973.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-25919.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152779238-4	chr1	152778752	152779752	+	973.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12710.0	NM_026369	67771.0	Mm.288974	NM_026369	ENSMUSG00000008475	Arpc5	5830443F10Rik|p16-Arc	actin related protein 2/3 complex, subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72145282-2	chr6	72144782	72145782	+	973.5833130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 4 of 6)	B4A|SINE|B4	-22085.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93187513-4	chr2	93187021	93188021	+	973.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356535)	promoter-TSS (NM_001356535)	-27.0	NM_001356536	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73723234-4	chr12	73722729	73723729	+	973.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 10 of 13)	ORR1D1|LTR|ERVL-MaLR	138433.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-24166641-3	chr19	24166136	24167136	+	973.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011597, intron 1 of 22)	intron (NM_011597, intron 1 of 22)	7553.0	NM_001198985	21873.0	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	31.0	15.0	23.5	2.5	4.5	6.5
Merged-chr6-8770597-3	chr6	8770124	8771124	+	973.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010492, intron 1 of 13)	intron (NM_010492, intron 1 of 13)	7860.0	NM_010492	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103389916-4	chr11	103389438	103390438	+	973.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 4 of 11)	L1M2|LINE|L1	22726.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	36.5	13.5	16.5	23.5	14.5	35.0
Merged-chr2-117962138-4	chr2	117961635	117962635	+	973.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	140207.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	37.0	76.0	45.5	39.0	80.0	44.5
Merged-chr4-94768841-3	chr4	94768341	94769341	+	973.544434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013690, intron 1 of 22)	ORR1E|LTR|ERVL-MaLR	29552.0	NM_001290551	21687.0	Mm.14313	NM_013690	ENSMUSG00000006386	Tek	AA517024|Cd202b|Hyk|STK1|Tie-2|Tie2	TEK receptor tyrosine kinase	protein-coding	1.0	6.5	5.5	11.5	19.0	10.0
Merged-chr15-77358876-4	chr15	77358430	77359430	+	973.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40180.0	NM_029419	75761.0	Mm.232636	NM_029419	ENSMUSG00000010601	Apol7a	9130022K13Rik|Apol3	apolipoprotein L 7a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180251423-4	chr2	180250923	180251923	+	973.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5956.0	NM_025587	66481.0	Mm.289669	NM_025587	ENSMUSG00000039001	Rps21	1810049N11Rik|2410030A14Rik	ribosomal protein S21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34952661-8	chr17	34952131	34953131	+	973.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027943)	promoter-TSS (NR_027943)	-160.0	NR_015536	68763.0	Mm.28895	NR_015536	ENSMUSG00000092203	1110038B12Rik	0610009C20Rik|0910001G04Rik	RIKEN cDNA 1110038B12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84983569-1	chr8	84983069	84984069	+	973.5	f1_balb.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-4821.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	10.0	70.0	35.0	7.5	24.0	29.5
Merged-chr1-151689182-4	chr1	151688671	151689671	+	973.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 5 of 13)	intron (NM_022018, intron 5 of 13)	65556.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62036954-2	chr15	62036454	62037454	+	973.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1032.0	NR_132747	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16117418-2	chr7	16116918	16117918	+	973.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025898, exon 11 of 11)	3' UTR (NM_025898, exon 11 of 11)	-2458.0	NM_133727	70394.0	Mm.41101	NM_133727	ENSMUSG00000006021	Kptn	2310042D10Rik|2E4|C030013F01Rik	kaptin	protein-coding	0.0	0.0	1.0	0.0	2.0	0.0
Merged-chr19-32903918-4	chr19	32903420	32904420	+	973.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146343.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	17.5	8.5	17.5	6.0	6.0	20.0
Merged-chr1-92061874-4	chr1	92061376	92062376	+	973.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207225, intron 2 of 26)	intron (NM_207225, intron 2 of 26)	118465.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-3373155-4	chr13	3372699	3373699	+	973.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105104.0	NR_015522	76937.0	Mm.487240	NR_015522	ENSMUSG00000097709	2810429I04Rik	AI256682	RIKEN cDNA 2810429I04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10501896-2	chr16	10501396	10502396	+	973.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001243761, exon 2 of 19)	exon (NM_001243761, exon 2 of 19)	12115.0	NM_001243761	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100669565-4	chr15	100669076	100670076	+	973.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001270537)	promoter-TSS (NM_001270537)	-76.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	23.0	46.0	42.5	38.5	44.0	43.5
Merged-chr19-5639590-2	chr19	5639125	5640125	+	973.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009045, intron 4 of 10)	(CAAG)n|Simple_repeat|Simple_repeat	2135.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	3.0	2.5	2.5	4.5	0.0	6.0
Merged-chr9-66907181-2	chr9	66906681	66907681	+	973.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	12524.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29891589-2	chr2	29891089	29892089	+	973.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355136, intron 2 of 21)	intron (NM_001355136, intron 2 of 21)	1526.0	NM_013615	18286.0	Mm.330116	NM_013615	ENSMUSG00000026790	Odf2	AI848335|MMTEST29	outer dense fiber of sperm tails 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59578023-4	chr9	59577540	59578540	+	973.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175235)	promoter-TSS (NM_175235)	-297.0	NM_175235	76183.0	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5804615-4	chr2	5804072	5805072	+	973.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356502, intron 8 of 11)	intron (NM_001356502, intron 8 of 11)	-40462.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	11.0	26.0	19.0	29.0	54.0	35.0
Merged-chr9-78488636-2	chr9	78488136	78489136	+	973.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6912.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41374001-2	chr19	41373501	41374501	+	973.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	11069.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-28972705-2	chr16	28972205	28973205	+	973.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43007.0	NM_177718	239796.0	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58989667-3	chr15	58989149	58990149	+	973.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	55839.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-46014509-4	chr9	46013998	46014998	+	973.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	1678.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-82045343-3	chr6	82044844	82045844	+	973.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145570, intron 1 of 2)	intron (NM_145570, intron 1 of 2)	3716.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	12.0	0.5	7.0	18.0	53.0	27.5
Merged-chr11-85821931-2	chr11	85821431	85822431	+	973.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_077059, intron 1 of 4)	intron (NR_077059, intron 1 of 4)	10457.0	NR_077059	69909.0	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116719116-4	chr6	116718607	116719607	+	973.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2349.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-10849712-4	chr8	10849261	10850261	+	973.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32693.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-26649405-2	chr11	26648905	26649905	+	973.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-55485.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103324155-4	chr15	103323662	103324662	+	973.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356627, intron 2 of 7)	intron (NM_001356627, intron 2 of 7)	10176.0	NM_001356627	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64753704-4	chr17	64753222	64754222	+	973.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008549, exon 22 of 22)	3' UTR (NM_008549, exon 22 of 22)	-13389.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91065774-4	chr2	91065299	91066299	+	973.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290765, intron 3 of 9)	intron (NM_001290765, intron 3 of 9)	4516.0	NM_026721	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	0.0	0.5	3.0	6.0	0.0	2.5
Merged-chr12-86796067-4	chr12	86795574	86796574	+	973.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61705.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-7113085-4	chr1	7112585	7113585	+	973.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183028, intron 1 of 5)	intron (NM_183028, intron 1 of 5)	24165.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40310091-3	chr12	40309587	40310587	+	973.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	86723.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-48445517-4	chr6	48445054	48446054	+	973.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085415)	promoter-TSS (NM_001085415)	271.0	NM_020589	68910.0	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	1.5	12.0	3.0	0.0	2.5	2.5
Merged-chr1-181922246-4	chr1	181921763	181922763	+	973.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010135, exon 7 of 15)	exon (NM_010135, exon 7 of 15)	-79862.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84660182-4	chr8	84659706	84660706	+	973.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2646.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.0	26.5	12.0	9.5	13.5	18.0
Merged-chr10-80510500-4	chr10	80509978	80510978	+	973.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139226, intron 1 of 1)	intron (NM_139226, intron 1 of 1)	15572.0	NM_139226	246086.0	Mm.250572	NM_139226	ENSMUSG00000045518	Onecut3	OC-3|Oc3	one cut domain, family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34647617-4	chr17	34647120	34648120	+	973.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017406, intron 1 of 17)	CpG	474.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	81.5	145.0	99.5	107.5	192.0	169.0
Merged-chr4-132555147-4	chr4	132554653	132555653	+	973.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8914.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167747645-4	chr2	167747144	167748144	+	973.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56467.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28697534-4	chr17	28697026	28698026	+	973.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	4958.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-7693184-3	chr6	7692649	7693649	+	973.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012055)	promoter-TSS (NM_012055)	33.0	NM_012055	27053.0	Mm.2942	NM_012055	ENSMUSG00000029752	Asns	-	asparagine synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55253777-5	chr19	55253223	55254223	+	973.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027976, exon 1 of 22)	5' UTR (NM_027976, exon 1 of 22)	354.0	NM_027976	433256.0	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-89346237-4	chr7	89345725	89346725	+	973.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 2 of 14)	MLT1J|LTR|ERVL-MaLR	-7438.0	NM_001360745	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55655021-4	chr19	55654529	55655529	+	973.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	47175.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	17.5	59.5	56.5	17.5	63.0	58.0
Merged-chr6-127147873-4	chr6	127147353	127148353	+	973.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009829, intron 2 of 4)	intron (NM_009829, intron 2 of 4)	-1536.0	NR_040274	77558.0	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171442125-4	chr1	171441627	171442627	+	973.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172647, intron 1 of 9)	intron (NM_172647, intron 1 of 9)	4566.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	12.0	10.5	9.0	12.0	10.5	8.0
Merged-chr10-8883910-4	chr10	8883405	8884405	+	973.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	2165.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	39.5	46.0	26.0	21.5	71.0	35.0
Merged-chr1-106374344-2	chr1	106373844	106374844	+	973.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 12 of 16)	Lx7|LINE|L1	172287.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-79521888-2	chr14	79521388	79522388	+	973.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	6214.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13600315-4	chr8	13599825	13600825	+	973.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 4 of 23)	intron (NM_009025, intron 4 of 23)	-37864.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123827751-3	chr5	123827252	123828252	+	973.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37764.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	2.5	0.0	0.0	2.5	0.0	3.5
Merged-chr19-5847585-3	chr19	5847097	5848097	+	973.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2117.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	45.5	107.5	66.5	54.5	103.5	88.0
Merged-chr14-62800204-3	chr14	62799703	62800703	+	973.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045503, intron 2 of 6)	MLT2B4|LTR|ERVL	-37487.0	NM_175546	268752.0	Mm.1960	NM_175546	ENSMUSG00000014547	Wdfy2	5830485M08|B130024L21Rik|ProF|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding	0.0	16.5	0.5	0.0	16.5	0.5
Merged-chr1-182368956-3	chr1	182368460	182369460	+	973.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27354.0	NM_175127	67948.0	Mm.30737	NM_175127	ENSMUSG00000047539	Fbxo28	4833428J17Rik|5730505P19Rik|D1Ertd578e|Fbx28|mKIAA0483	F-box protein 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182928624-4	chr1	182928086	182929086	+	973.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26202.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-150593841-7	chr5	150593323	150594323	+	973.3214109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133898, intron 1 of 4)	CpG	702.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120150526-4	chr11	120150027	120151027	+	973.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361699, intron 1 of 16)	intron (NM_001361699, intron 1 of 16)	824.0	NM_001361698	72055.0	Mm.253403	NM_024249	ENSMUSG00000061306	Slc38a10	1810073N04Rik	solute carrier family 38, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106418836-4	chr11	106418333	106419333	+	973.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023913, exon 10 of 22)	exon (NM_023913, exon 10 of 22)	-36052.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11485466-4	chr19	11484975	11485975	+	973.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6563.0	NM_001164202	666926.0	Mm.486382	NM_001164202	ENSMUSG00000058470	Gm8369	EG666926	predicted gene 8369	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83271681-4	chr11	83271192	83272192	+	973.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15034.0	NM_001166028	237890.0	Mm.297670	NM_001166028	ENSMUSG00000082101	Slfn14	Gm20|Slfn14-ps	schlafen 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-58568478-4	chr4	58567984	58568984	+	973.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14993.0	NM_010336	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-44383170-4	chr18	44382649	44383649	+	973.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027490, intron 1 of 10)	intron (NM_027490, intron 1 of 10)	2649.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71287625-6	chr17	71287069	71288069	+	973.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	(CCA)n|Simple_repeat|Simple_repeat	23442.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	68.5	173.5	102.5	182.0	294.0	184.5
Merged-chr4-150136888-4	chr4	150136390	150137390	+	973.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019741, intron 7 of 13)	intron (NM_019741, intron 7 of 13)	-12082.0	NM_001085529	435818.0	Mm.359648	NM_001085529	ENSMUSG00000062064	Slc2a7	-	solute carrier family 2 (facilitated glucose transporter), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180222240-3	chr1	180221719	180222719	+	973.2666630000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	23731.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0.0	2.5	0.0	0.0	2.5	0.0
Merged-chr11-61839524-7	chr11	61839007	61840007	+	973.26532	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013881, intron 5 of 26)	B1_Mur4|SINE|Alu	15585.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9107559-4	chr13	9107067	9108067	+	973.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 1 of 17)	intron (NM_172585, intron 1 of 17)	13686.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107628148-2	chr9	107627641	107628641	+	973.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008138, intron 1 of 8)	intron (NM_008138, intron 1 of 8)	7201.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	22.5	34.0	32.0	4.5	30.0	34.0
Merged-chr6-124319722-4	chr6	124319230	124320230	+	973.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170395, intron 10 of 16)	intron (NM_001170395, intron 10 of 16)	15079.0	NM_053094	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25297879-2	chr10	25297394	25298394	+	973.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 1 of 7)	intron (NM_018747, intron 1 of 7)	1269.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	39.0	23.0	29.5	18.0	11.0	15.5
Merged-chr4-137724327-4	chr4	137723803	137724803	+	973.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_138592)	promoter-TSS (NR_138592)	-158.0	NR_138592	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	11.0	24.5	74.5	19.5	51.5	62.0
Merged-chr12-73359725-3	chr12	73359220	73360220	+	973.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49843.0	NR_046013	380765.0	Mm.490476	NR_046013	ENSMUSG00000056359	D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	0.0	1.5	0.5	1.5	0.0	0.0
Merged-chr12-85531151-2	chr12	85530651	85531651	+	973.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57261.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59457377-4	chr15	59456872	59457872	+	973.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	83174.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	1.0	3.0	3.5	2.0	11.5	4.0
Merged-chr9-85369722-4	chr9	85369252	85370252	+	973.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42602.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	18.5	46.0	19.5	27.0	65.5	24.0
Merged-chr4-126110196-2	chr4	126109734	126110734	+	973.25	f0_balb.idr|f0_c57.idr	intron (NM_028800, intron 1 of 10)	intron (NM_028800, intron 1 of 10)	6277.0	NM_001145827	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124264538-3	chr2	124264030	124265030	+	973.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 2 of 20)	intron (NM_001290997, intron 2 of 20)	-42172.0	NR_040612	75946.0	Mm.415059	NR_040612	ENSMUSG00000086954	4930583P06Rik	-	RIKEN cDNA 4930583P06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37206890-6	chr19	37206403	37207403	+	973.2222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164337)	promoter-TSS (NM_001164337)	568.0	NM_198300	208922.0	Mm.391176	NM_198300	ENSMUSG00000039652	Cpeb3	4831444O18Rik|CPE-BP3|mKIAA0940	cytoplasmic polyadenylation element binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12170438-3	chr17	12169942	12170942	+	973.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026644, intron 2 of 8)	intron (NM_026644, intron 2 of 8)	51158.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	3.0	0.0	3.0	6.0	0.0	6.0
Merged-chr9-78430686-4	chr9	78430176	78431176	+	973.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_125721, exon 5 of 5)	non-coding (NR_125721, exon 5 of 5)	12561.0	NR_125721	214763.0	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93918510-4	chr16	93918015	93919015	+	973.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019500)	TTS (NM_019500)	11052.0	NM_001165925	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	6.0	2.5	4.5	0.0	0.0	2.5
Merged-chr5-123139263-4	chr5	123138838	123139838	+	973.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2855.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84314740-4	chr3	84314238	84315238	+	973.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9963.0	NM_001271726	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115814105-4	chr11	115813598	115814598	+	973.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080643)	promoter-TSS (NM_080643)	-506.0	NM_080643	140721.0	Mm.383737	NM_080643	ENSMUSG00000034471	Caskin2	1600028L06Rik|mKIAA1139	CASK-interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27677717-4	chr3	27677211	27678211	+	973.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173182, intron 1 of 25)	intron (NM_173182, intron 1 of 25)	32741.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132796363-4	chr4	132795881	132796881	+	973.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033308)	promoter-TSS (NM_001033308)	-17.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-43703250-5	chr10	43702753	43703753	+	973.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A2|LTR|ERVK	-42905.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95850723-4	chr10	95850225	95851225	+	973.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89938.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44229542-4	chr13	44229017	44230017	+	973.1875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13030.0	NR_045088	100503592.0	Mm.184925	NR_045088	ENSMUSG00000113186	A330076C08Rik	-	RIKEN cDNA A330076C08 gene	ncRNA	7.5	0.0	1.0	4.0	6.5	4.5
Merged-chr8-71495130-4	chr8	71494619	71495619	+	973.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7016.0	NM_032544	70359.0	Mm.142112	NM_032544	ENSMUSG00000007610	Gtpbp3	2410009F13Rik|AI607903	GTP binding protein 3	protein-coding	2.5	6.5	0.0	0.0	3.0	0.0
Merged-chr17-71292120-3	chr17	71291642	71292642	+	973.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	18869.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	12.0	6.0	4.0	3.0	7.5	1.0
Merged-chr7-45204590-4	chr7	45204096	45205096	+	973.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_201374, exon 1 of 20)	exon (NM_201374, exon 1 of 20)	296.0	NM_201374	384619.0	Mm.214931	NM_201374	ENSMUSG00000038292	Ccdc155	Gm1434|KASH5	coiled-coil domain containing 155	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88293989-7	chr8	88293451	88294451	+	973.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037724)	promoter-TSS (NM_001037724)	-253.0	NM_001037724	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	1.5	3.0	0.0	6.0	1.0	4.0
Merged-chr2-160057678-4	chr2	160057162	160058162	+	973.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41009.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152884158-3	chr3	152883667	152884667	+	973.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	98040.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	0.0	1.0	0.0	0.5	3.0	1.5
Merged-chr12-41417788-3	chr12	41417306	41418306	+	973.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	68251.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-22826432-4	chr2	22825917	22826917	+	973.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 4 of 13)	ORR1E|LTR|ERVL-MaLR	52090.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80156934-4	chr11	80156430	80157430	+	973.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 2 of 10)	intron (NM_172133, intron 2 of 10)	2768.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74808319-4	chr1	74807820	74808820	+	973.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16301.0	NM_009518	22409.0	Mm.5130	NM_009518	ENSMUSG00000026167	Wnt10a	-	wingless-type MMTV integration site family, member 10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-166360360-4	chr1	166359864	166360864	+	973.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18803.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75841848-4	chr14	75841298	75842298	+	973.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	3166.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80325001-7	chr12	80324510	80325510	+	973.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-64629.0	NM_001346669	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-105363065-4	chr11	105362559	105363559	+	973.1416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172568, intron 11 of 11)	CpG	70413.0	NM_008626	17534.0	Mm.235616	NM_008626	ENSMUSG00000020695	Mrc2	Endo180|mKIAA0709|uPARAP	mannose receptor, C type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88633587-4	chr8	88633076	88634076	+	973.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027840, intron 1 of 3)	MTEa|LTR|ERVL-MaLR	2552.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	70.0	155.5	94.0	2.0	15.5	3.0
Merged-chr3-81039912-4	chr3	81039423	81040423	+	973.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	3507.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	3.0	13.5	9.5	4.0	19.5	15.5
Merged-chr5-122131816-4	chr5	122131336	122132336	+	973.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183307, intron 2 of 12)	intron (NM_183307, intron 2 of 12)	3057.0	NM_001289811	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120580356-4	chr11	120579858	120580858	+	973.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133796, exon 2 of 6)	exon (NM_133796, exon 2 of 6)	1262.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-28677617-4	chr19	28677120	28678120	+	973.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045330)	promoter-TSS (NR_045330)	-604.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-37258755-3	chr6	37258260	37259260	+	973.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	41216.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160363351-3	chr2	160362851	160363851	+	973.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010658)	TTS (NM_010658)	3714.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-78869799-3	chr2	78869291	78870291	+	973.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151458, exon 1 of 7)	non-coding (NR_151458, exon 1 of 7)	113.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-65629389-4	chr16	65628882	65629882	+	973.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66685.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	3.0	3.0	2.0	6.5	3.5	3.0
Merged-chr4-59040678-3	chr4	59040236	59041236	+	973.095215	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025277, intron 2 of 2)	intron (NM_025277, intron 2 of 2)	5580.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	11.0	4.0	5.0	13.5	30.0	15.5
Merged-chr2-124642375-4	chr2	124641874	124642874	+	973.087524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	-11207.0	NM_199240	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	8.0	20.0	7.5	5.5	13.0	5.5
Merged-chr4-147399029-2	chr4	147398529	147399529	+	973.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	RMER17D2|LTR|ERVK	-154248.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64118927-4	chr1	64118433	64119433	+	973.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	2456.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43466625-4	chr4	43466124	43467124	+	973.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11998.0	NM_007654	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	51.0	201.5	88.5	96.5	130.5	133.0
Merged-chr1-84321593-4	chr1	84321100	84322100	+	973.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-36955.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-100703417-4	chr3	100702894	100703894	+	973.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17921.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-14132041-4	chr16	14131534	14132534	+	973.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081154, intron 15 of 26)	intron (NM_001081154, intron 15 of 26)	27240.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-25436270-4	chr5	25435775	25436775	+	973.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081383, intron 2 of 58)	PB1D9|SINE|Alu	62508.0	NM_001081383	231051.0	Mm.332268	NM_001081383	ENSMUSG00000038056	Kmt2c	E330008K23Rik|HALR|Mll3|mKIAA1506	lysine (K)-specific methyltransferase 2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136543311-4	chr6	136542819	136543819	+	973.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	24468.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	30.5	26.5	52.5	9.0	15.0	31.5
Merged-chr3-122638831-4	chr3	122638333	122639333	+	973.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19119.0	NM_001114665	214459.0	Mm.209491	NM_153118	ENSMUSG00000039735	Fnbp1l	2610318I01Rik|AW548221|TOCA1|toca-1	formin binding protein 1-like	protein-coding	5.5	5.5	3.0	4.5	4.0	2.5
Merged-chr3-51662844-4	chr3	51662350	51663350	+	973.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174995, intron 1 of 4)	intron (NM_174995, intron 1 of 4)	1671.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70894169-6	chr14	70893695	70894695	+	973.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302095, intron 1 of 6)	intron (NM_001302095, intron 1 of 6)	4088.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	10.5	13.5	9.0	7.5	23.0	12.5
Merged-chr10-25443788-3	chr10	25443291	25444291	+	973.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013511, exon 3 of 20)	exon (NM_013511, exon 3 of 20)	35423.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-102658603-3	chr13	102658104	102659104	+	973.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34943.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	15.0	61.5	27.5	0.0	7.5	1.5
Merged-chr1-165192409-4	chr1	165191918	165192918	+	973.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151711, intron 1 of 6)	(T)n|Simple_repeat|Simple_repeat	2015.0	NM_145512	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-71165286-4	chr9	71164790	71165790	+	973.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2001.0	NM_022026	64008.0	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54839209-4	chr18	54838666	54839666	+	973.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	151014.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	5.0	24.5	25.0	0.0	4.0	11.5
Merged-chr7-97376121-4	chr7	97375608	97376608	+	973.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199035, intron 2 of 12)	intron (NM_199035, intron 2 of 12)	4491.0	NM_199035	381903.0	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	7.0	9.0	6.0	5.0	6.5	3.0
Merged-chr15-39945183-4	chr15	39944681	39945681	+	973.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1187.0	NM_172814	239393.0	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84798779-4	chr2	84798228	84799228	+	973.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019949)	promoter-TSS (NM_019949)	-100.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	0.0	3.0	3.5	0.0	0.5	0.5
Merged-chr11-74988287-4	chr11	74987778	74988778	+	973.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 9 of 18)	intron (NM_001002764, intron 9 of 18)	62406.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75853649-4	chr10	75853153	75854153	+	973.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6597.0	NM_010798	17319.0	Mm.2326	NM_010798	ENSMUSG00000033307	Mif	GIF|Glif	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24151450-4	chr10	24150933	24151933	+	973.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016797, intron 1 of 9)	intron (NM_016797, intron 1 of 9)	2116.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62106707-4	chr15	62106194	62107194	+	973.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	67437.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20795768-2	chr18	20795268	20796268	+	973.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-49364.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-32396301-3	chr3	32395791	32396791	+	973.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30626.0	NM_009517	22401.0	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53068174-2	chr4	53067674	53068674	+	973.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 28 of 49)	intron (NM_013454, intron 28 of 49)	56294.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21916043-2	chr16	21915543	21916543	+	973.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172821, intron 9 of 12)	Lx8|LINE|L1	24074.0	NM_172821	71751.0	Mm.420837	NM_172821	ENSMUSG00000033618	Map3k13	C130026N12Rik|LZK	mitogen-activated protein kinase kinase kinase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-3234930-1	chr16	3234430	3235430	+	973.0	f1_balb.idr	Intergenic	Intergenic	-357468.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71164722-2	chr17	71164222	71165222	+	973.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-18810.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	1.0	0.0	0.5	0.0	0.0	0.5
Merged-chr3-81058710-4	chr3	81058216	81059216	+	973.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	22300.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	12.5	19.0	18.5	11.5	31.0	26.0
Merged-chr1-165649239-2	chr1	165648739	165649739	+	973.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178593, exon 7 of 7)	3' UTR (NM_178593, exon 7 of 7)	-14698.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87470596-2	chr6	87470096	87471096	+	973.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175476, exon 6 of 11)	exon (NM_175476, exon 6 of 11)	25731.0	NR_104483	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22857664-2	chr11	22857164	22858164	+	973.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	2071.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117218686-4	chr4	117218199	117219199	+	973.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145637, intron 7 of 12)	intron (NM_001145637, intron 7 of 12)	33218.0	NM_001145637	381544.0	Mm.23504	NM_001033774	ENSMUSG00000060268	Armh1	1700012C08Rik|Gm1661|Gm1662|Ncrna00082	armadillo-like helical domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19075249-2	chr7	19074749	19075749	+	973.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010058)	promoter-TSS (NM_010058)	-951.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155512601-2	chr2	155512095	155513095	+	973.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144786, intron 1 of 14)	intron (NM_144786, intron 1 of 14)	2251.0	NM_144786	207182.0	Mm.41757	NM_144786	ENSMUSG00000027603	Ggt7	1110017C11Rik|6330563L03Rik|Ggtl3	gamma-glutamyltransferase 7	protein-coding	0.0	2.0	4.5	10.0	0.0	3.5
Merged-chr4-136135284-1	chr4	136134784	136135784	+	973.0	f1_balb.idr	Intergenic	CpG	-8538.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	8.0	11.5	11.0	6.5	6.0	9.5
Merged-chr11-121701563-2	chr11	121701063	121702063	+	973.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144797)	promoter-TSS (NM_144797)	-864.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62507053-2	chr4	62506553	62507553	+	973.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008525, exon 12 of 12)	3' UTR (NM_008525, exon 12 of 12)	-4853.0	NM_024257	72748.0	Mm.41506	NM_024257	ENSMUSG00000038422	Hdhd3	2810435D12Rik	haloacid dehalogenase-like hydrolase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136180161-4	chr4	136179651	136180651	+	973.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305399)	promoter-TSS (NM_001305399)	-631.0	NM_001305399	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	6.5	25.0	8.5	15.5	35.0	34.0
Merged-chr11-60879601-4	chr11	60879046	60880046	+	973.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168507)	promoter-TSS (NM_001168507)	-508.0	NM_001168507	216821.0	Mm.28063	NM_173453	ENSMUSG00000043284	Tmem11	5730466P16Rik|AA409091	transmembrane protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5501231-1	chr11	5500731	5501731	+	973.0	f1_balb.idr	Intergenic	Intergenic	-19410.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	7.0	0.5	5.0	8.0	0.0	2.0
Merged-chr3-127550644-1	chr3	127550144	127551144	+	973.0	f1_c57bl6.idr	intron (NM_138593, intron 1 of 12)	intron (NM_138593, intron 1 of 12)	2705.0	NM_138593	28036.0	Mm.291032	NM_138593	ENSMUSG00000027968	Larp7	C330027G06Rik|D3Wsu161e	La ribonucleoprotein domain family, member 7	protein-coding	10.5	0.0	0.0	0.0	9.0	2.0
Merged-chr12-105733533-4	chr12	105733047	105734047	+	973.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030187, intron 6 of 17)	intron (NM_030187, intron 6 of 17)	27565.0	NM_030187	78801.0	Mm.36006	NM_030187	ENSMUSG00000041323	Ak7	4930502N02Rik|AK 7	adenylate kinase 7	protein-coding	0.0	1.5	0.5	1.0	3.5	5.0
Merged-chr3-135420735-4	chr3	135420236	135421236	+	973.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025902, intron 1 of 2)	intron (NM_025902, intron 1 of 2)	2697.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-174109892-3	chr2	174109404	174110404	+	973.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_213733)	promoter-TSS (NM_213733)	-447.0	NM_213733	228961.0	Mm.295629	NM_213733	ENSMUSG00000039263	Npepl1	BC023239|C85514|mKIAA1974	aminopeptidase-like 1	protein-coding	10.0	10.0	14.0	3.0	1.5	10.5
Merged-chr7-25132112-2	chr7	25131612	25132612	+	973.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163556, intron 1 of 13)	intron (NM_001163556, intron 1 of 13)	348.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9033095-1	chr3	9032595	9033595	+	973.0	f1_c57bl6.idr	Intergenic	Intergenic	-28372.0	NM_001357075	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	17.5	71.0	28.5	6.0	17.0	5.5
Merged-chr7-30634825-4	chr7	30634323	30635323	+	973.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007959, exon 4 of 6)	exon (NM_007959, exon 4 of 6)	1029.0	NM_007959	14008.0	Mm.4829	NM_007959	ENSMUSG00000006311	Etv2	Etsrp71	ets variant 2	protein-coding	0.0	1.0	0.0	0.0	1.0	0.0
Merged-chr17-26513295-4	chr17	26512808	26513808	+	972.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4836.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	47.0	37.5	37.0	21.5	30.0	36.0
Merged-chr13-51848080-4	chr13	51847580	51848580	+	972.970215	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011817, exon 4 of 4)	3' UTR (NM_011817, exon 4 of 4)	1405.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152677277-4	chr1	152676774	152677774	+	972.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	-52057.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40415249-4	chr9	40414736	40415736	+	972.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 1 of 20)	intron (NM_001357617, intron 1 of 20)	-38819.0	NM_001357621	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	40.5	37.5	81.5	32.5	44.0	43.5
Merged-chr6-51858037-4	chr6	51857548	51858548	+	972.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	154501.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69368942-6	chr11	69368459	69369459	+	972.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146019, intron 1 of 39)	CpG	467.0	NM_146019	216848.0	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	46.0	77.0	88.0	34.5	106.0	83.0
Merged-chr7-96977420-4	chr7	96976934	96977934	+	972.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153591, intron 5 of 13)	intron (NM_153591, intron 5 of 13)	25907.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-46144667-4	chr6	46144192	46145192	+	972.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004357, intron 8 of 23)	A-rich|Low_complexity|Low_complexity	1084631.0	NM_001004357	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	18.5	25.5	15.0	17.5	29.5	6.0
Merged-chr9-15010469-4	chr9	15009975	15010975	+	972.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019482, intron 2 of 4)	intron (NM_019482, intron 2 of 4)	35003.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105800786-3	chr3	105800273	105801273	+	972.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145541, intron 1 of 7)	CpG	608.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	47.5	115.0	116.0	16.5	104.0	62.0
Merged-chr10-8953160-3	chr10	8952663	8953663	+	972.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67093.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	13.0	6.5	4.5	0.0	2.0	1.5
Merged-chr9-120927414-4	chr9	120926921	120927921	+	972.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040753, intron 2 of 2)	intron (NR_040753, intron 2 of 2)	3381.0	NR_040753	78060.0	Mm.463884	NR_040753	ENSMUSG00000086365	4930593C16Rik	-	RIKEN cDNA 4930593C16 gene	ncRNA	3.0	12.0	5.5	3.5	10.0	11.0
Merged-chr12-25093453-5	chr12	25092949	25093949	+	972.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010496)	TTS (NM_010496)	2643.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	27.0	72.0	30.5	28.5	69.0	37.0
Merged-chr1-44064825-2	chr1	44064325	44065325	+	972.9166869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37616.0	NM_029368	75623.0	Mm.348017	NM_029368	ENSMUSG00000026049	Tex30	1700029F09Rik|3110030D08Rik	testis expressed 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-78236768-4	chr13	78236203	78237203	+	972.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045195)	TTS (NR_045195)	-37830.0	NM_010151	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-74704569-4	chr5	74704055	74705055	+	972.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1652.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-17163647-4	chr19	17163133	17164133	+	972.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181348, intron 9 of 19)	intron (NM_181348, intron 9 of 19)	175872.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-37231333-4	chr6	37230829	37231829	+	972.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	68647.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130170788-4	chr5	130170284	130171284	+	972.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1035.0	NM_001199059	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3188472-2	chr11	3187968	3188968	+	972.916626	f0_balb.idr|f0_c57.idr	intron (NM_030207, intron 2 of 32)	intron (NM_030207, intron 2 of 32)	4995.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63277180-4	chr4	63276693	63277693	+	972.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025685, intron 18 of 60)	intron (NM_025685, intron 18 of 60)	20342.0	NR_030477	735262.0		NR_030477	ENSMUSG00000070102	Mir455	Mirn455|mir-455|mmu-mir-455	microRNA 455	ncRNA	2.5	10.5	11.0	0.0	5.0	14.5
Merged-chr11-76253305-3	chr11	76252800	76253800	+	972.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9564.0	NM_183263	67390.0	Mm.24886	NM_183263	ENSMUSG00000038046	Mrm3	4833420N02Rik|AI255153|HC90|Rnmtl1	mitochondrial rRNA methyltransferase 3	protein-coding	2.0	14.5	8.0	16.5	1.0	7.0
Merged-chr4-88701771-3	chr4	88701280	88702280	+	972.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10512.0	NM_008336	15974.0	Mm.377093	NM_008336	ENSMUSG00000100079	Ifnab	-	interferon alpha B	protein-coding	3.5	20.5	15.0	9.0	14.5	12.5
Merged-chr12-110841821-3	chr12	110841335	110842335	+	972.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011973)	promoter-TSS (NM_011973)	806.0	NR_152102	66709.0	Mm.390504	NR_152102		4921507G05Rik	-	RIKEN cDNA 4921507G05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22809581-4	chr11	22809089	22810089	+	972.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50146.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-19161737-4	chr8	19161234	19162234	+	972.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3847.0	NM_153115	78128.0	Mm.229357	NM_153115	ENSMUSG00000079842	Spag11a	9230111C08Rik|Bin1b|EP2Q|EP2e|Spag11	sperm associated antigen 11A	protein-coding	50.5	64.0	62.0	34.0	59.0	35.0
Merged-chr9-32672563-4	chr9	32672066	32673066	+	972.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23476.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120039841-4	chr11	120039372	120040372	+	972.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	1909.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	76.5	92.0	81.0	70.5	141.5	135.0
Merged-chr12-85389265-4	chr12	85388752	85389752	+	972.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14535.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84465064-4	chr1	84464561	84465561	+	972.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152915, intron 7 of 12)	intron (NM_152915, intron 7 of 12)	-180416.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170806369-4	chr1	170805876	170806876	+	972.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 9 of 15)	intron (NM_001081304, intron 9 of 15)	61395.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24928192-4	chr10	24927729	24928729	+	972.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007482)	promoter-TSS (NM_007482)	-759.0	NM_007482	11846.0	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	21.5	95.0	51.5	20.5	48.0	40.5
Merged-chr10-26762703-4	chr10	26762199	26763199	+	972.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9813.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90892167-2	chr5	90891667	90892667	+	972.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008176, intron 3 of 3)	intron (NM_008176, intron 3 of 3)	922.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0.0	0.0	3.0	0.0	3.5	1.5
Merged-chr15-102516719-2	chr15	102516219	102517219	+	972.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163643, intron 1 of 15)	CpG	285.0	NM_001163643	26404.0	Mm.172897	NM_009582	ENSMUSG00000023050	Map3k12	DLK|MUK|Zpk	mitogen-activated protein kinase kinase kinase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35027299-4	chr18	35026804	35027804	+	972.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72953.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	1.5	3.0	3.5	0.0	0.0	2.0
Merged-chr11-98121893-6	chr11	98121329	98122329	+	972.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028149, intron 2 of 14)	intron (NM_028149, intron 2 of 14)	27787.0	NM_028149	72194.0	Mm.218350	NM_028149	ENSMUSG00000020883	Fbxl20	2610511F20Rik|4632423N09Rik|AI849362|AL117906|C86145|Fbl2|Scr|mKIAA4147	F-box and leucine-rich repeat protein 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-164136139-4	chr1	164135644	164136644	+	972.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011347, intron 8 of 15)	intron (NM_011347, intron 8 of 15)	-15691.0	NM_007976	14067.0	Mm.12900	NM_007976	ENSMUSG00000026579	F5	AI173222|Cf-5|Cf5	coagulation factor V	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88521914-4	chr3	88521417	88522417	+	972.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10478.0	NM_001029890	72640.0	Mm.275154	NM_001029890	ENSMUSG00000074480	Mex3a	2700083E18Rik|Gm411|Rkhd4	mex3 RNA binding family member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102060475-4	chr5	102059980	102060980	+	972.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	9441.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98339231-4	chr7	98338724	98339724	+	972.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18016.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	11.5	11.0	14.5	8.5	10.0	14.0
Merged-chr4-32560441-4	chr4	32559978	32560978	+	972.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_026843, exon 5 of 5)	non-coding (NR_026843, exon 5 of 5)	11184.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	14.5	61.0	47.0	57.5	61.0	33.5
Merged-chr5-31602597-4	chr5	31602113	31603113	+	972.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11338.0	NM_025796	66845.0	Mm.120763	NM_025796	ENSMUSG00000106918	Mrpl33	0610009M10Rik|L33mt|MRP-L33	mitochondrial ribosomal protein L33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116266816-4	chr6	116266332	116267332	+	972.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290339, intron 1 of 6)	L1MC1|LINE|L1	300.0	NM_001290339	67492.0	Mm.272772	NM_001081317	ENSMUSG00000042213	Zfand4	Anubl1	zinc finger, AN1-type domain 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59413397-4	chr15	59412910	59413910	+	972.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 2 of 4)	intron (NM_001164604, intron 2 of 4)	39212.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31291071-4	chr17	31290562	31291562	+	972.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4421.0	NM_153062	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109257792-4	chr4	109257285	109258285	+	972.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22153.0	NM_001033226	108802.0	Mm.318248	NM_001033226	ENSMUSG00000028558	Calr4	4933403L16Rik|AU017583	calreticulin 4	protein-coding	11.5	1.5	5.5	1.0	13.5	21.5
Merged-chr15-62166043-4	chr15	62165551	62166551	+	972.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003368, intron 4 of 8)	intron (NR_003368, intron 4 of 8)	53400.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	4.5	10.5	11.0	4.5	10.5	11.0
Merged-chr2-128342470-4	chr2	128341951	128342951	+	972.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028590, intron 1 of 2)	intron (NR_028590, intron 1 of 2)	86900.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	24.0	22.0	16.0	14.5	33.0	27.5
Merged-chr14-30550032-4	chr14	30549507	30550507	+	972.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009388, intron 1 of 13)	intron (NM_009388, intron 1 of 13)	876.0	NM_009388	21881.0	Mm.290692	NM_009388	ENSMUSG00000021957	Tkt	p68	transketolase	protein-coding	28.0	89.0	71.5	37.0	84.5	108.5
Merged-chr2-27745016-3	chr2	27744518	27745518	+	972.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 4 of 9)	intron (NM_001290481, intron 4 of 9)	34435.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135255026-3	chr4	135254566	135255566	+	972.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	17694.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-19705858-4	chr14	19705367	19706367	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45390.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32953529-4	chr19	32953030	32954030	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	195953.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-22700116-4	chr10	22699613	22700613	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178934, intron 4 of 4)	intron (NM_178934, intron 4 of 4)	29319.0	NR_106123	102465768.0		NR_106123	ENSMUSG00000098714	Mir7663	Gm28034|mmu-mir-7663	microRNA 7663	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84274057-4	chr18	84273573	84274573	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 8 of 8)	intron (NM_001033341, intron 8 of 8)	185915.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98120462-4	chr7	98119959	98120959	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256081)	promoter-TSS (NM_001256081)	-966.0	NM_008663	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	0.0	0.5	0.5	1.0	0.0	0.0
Merged-chr2-30440829-2	chr2	30440329	30441329	+	972.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_138748, intron 8 of 9)	intron (NM_138748, intron 8 of 9)	24779.0	NM_138748	110854.0	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-62843483-4	chr5	62842990	62843990	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 6 of 8)	Tigger5b|DNA|TcMar-Tigger	29667.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	50.5	83.5	46.0	30.0	61.0	26.0
Merged-chr1-89575134-4	chr1	89574641	89575641	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	108751.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108047138-4	chr3	108046644	108047644	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2285.0	NM_001160411	14865.0	Mm.31203	NM_026764	ENSMUSG00000027890	Gstm4	1110004G14Rik|GSTM7-7|Gstb-4|Gstb4	glutathione S-transferase, mu 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29149066-4	chr11	29148571	29149571	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027869, intron 18 of 27)	intron (NM_027869, intron 18 of 27)	18320.0	NM_027869	71701.0	Mm.211131	NM_027869	ENSMUSG00000020464	Pnpt1	1200003F12Rik|Old35|PNPase|Pnptl1	polyribonucleotide nucleotidyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-69635899-4	chr2	69635354	69636354	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-11401.0	NM_028284	72569.0	Mm.252136	NM_028284	ENSMUSG00000063145	Bbs5	1700049I01Rik|2700023J09Rik	Bardet-Biedl syndrome 5 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87530400-4	chr6	87529970	87530970	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	2789.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	1.0	1.5	1.5	1.0	1.5	1.5
Merged-chr5-88596230-4	chr5	88595728	88596728	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 2 of 13)	MTD|LTR|ERVL-MaLR	12715.0	NM_001359209	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-82751195-4	chr6	82750697	82751697	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 2 of 17)	intron (NM_013820, intron 2 of 17)	23257.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	6.5	27.0	27.0	0.0	17.0	18.0
Merged-chr7-93013470-4	chr7	93012967	93013967	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-66412.0	NM_021427	58238.0	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3923045-4	chr19	3922552	3923552	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026316, intron 2 of 9)	intron (NM_026316, intron 2 of 9)	6664.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61321455-4	chr18	61320967	61321967	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133249, intron 2 of 11)	intron (NM_133249, intron 2 of 11)	76433.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32735461-4	chr12	32734949	32735949	+	972.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	FordPrefect|DNA|hAT-Tip100	-84886.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65608951-4	chr17	65608448	65609448	+	972.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355402, intron 1 of 6)	Lx8|LINE|L1	4607.0	NM_001355402	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85177311-4	chr12	85176764	85177764	+	972.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008827)	promoter-TSS (NM_008827)	49.0	NM_008827	18654.0	Mm.4809	NM_008827	ENSMUSG00000004791	Pgf	AI854365|PIGF|Plgf	placental growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31184686-4	chr6	31184181	31185181	+	972.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 1 of 2)	intron (NR_110470, intron 1 of 2)	33793.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-149221614-4	chr5	149221119	149222119	+	972.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37059.0	NM_001359957	231915.0	Mm.29402	NM_001013378	ENSMUSG00000041264	Uspl1	E430026A01Rik	ubiquitin specific peptidase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-19604692-4	chr4	19604184	19605184	+	972.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025476, intron 8 of 9)	intron (NM_025476, intron 8 of 9)	29618.0	NM_025476	66302.0	Mm.440686	NM_025476	ENSMUSG00000028229	Rmdn1	Fam82b|RMD-1	regulator of microtubule dynamics 1	protein-coding	5.0	21.5	15.0	4.0	6.0	13.5
Merged-chr2-103153476-4	chr2	103152973	103153973	+	972.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79798.0	NM_019735	56369.0	Mm.24772	NM_019735	ENSMUSG00000010911	Apip	APIP2|CGI-29|Mmrp19	APAF1 interacting protein	protein-coding	0.0	3.5	0.5	0.0	0.0	0.0
Merged-chr14-56690906-4	chr14	56690402	56691402	+	972.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153396, intron 9 of 12)	intron (NR_153396, intron 9 of 12)	10098.0	NR_046209	100503823.0	Mm.474486	NR_046209		Gm16973	-	predicted gene, 16973	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-135198049-4	chr6	135197549	135198549	+	972.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028982)	promoter-TSS (NM_028982)	-51.0	NM_001362111	74525.0	Mm.34182	NM_028982	ENSMUSG00000030207	Fam234b	8430419L09Rik|mKIAA1467	family with sequence similarity 234, member B	protein-coding	20.0	13.0	10.0	16.0	9.0	11.5
Merged-chr6-134752442-4	chr6	134751928	134752928	+	972.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130447, intron 3 of 6)	intron (NM_130447, intron 3 of 6)	-39932.0	NR_151454	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	3.5	4.0	7.5	3.0	7.0	9.0
Merged-chr10-99461280-3	chr10	99460792	99461792	+	972.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147879.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57546567-4	chr16	57546069	57547069	+	972.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-2673.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-75398894-4	chr1	75398395	75399395	+	972.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085370, intron 4 of 38)	intron (NM_001085370, intron 4 of 38)	-1190.0	NM_001173477	11790.0	Mm.275397	NM_007463	ENSMUSG00000026207	Speg	AW125581|Apeg1|BPEG|D1Bwg1450e|SPEGalpha|SPEGbeta|mKIAA1297	SPEG complex locus	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35202604-4	chr17	35202103	35203103	+	972.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001278601)	promoter-TSS (NM_001278601)	-596.0	NM_001278601	21926.0	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	5.0	15.0	5.0	6.0	15.0	5.0
Merged-chr1-62679157-3	chr1	62678653	62679653	+	972.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24164.0	NM_001077406	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32237268-6	chr2	32236714	32237714	+	972.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145145, intron 1 of 19)	intron (NM_145145, intron 1 of 19)	531.0	NM_145145	99011.0	Mm.31192	NM_145145	ENSMUSG00000039254	Pomt1	AI505244	protein-O-mannosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43779182-4	chr13	43778658	43779658	+	972.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5954.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50361921-4	chr17	50361414	50362414	+	972.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68294.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58211125-4	chr11	58210620	58211620	+	972.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3857.0	NM_019440	54396.0	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	12.5	22.0	13.5	90.5	141.0	92.5
Merged-chr14-40933331-6	chr14	40932833	40933833	+	972.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	14876.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-129879351-4	chr3	129878859	129879859	+	972.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104611, intron 1 of 4)	intron (NR_104611, intron 1 of 4)	753.0	NM_023196	66350.0	Mm.151951	NM_023196	ENSMUSG00000027999	Pla2g12a	2310004B05Rik|GXII|GXII-1|GXII-1-PLA2|Pla2g12|Rossy|mGXII-1	phospholipase A2, group XIIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100575070-6	chr11	100574560	100575560	+	972.589294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146318)	promoter-TSS (NM_001146318)	121.0	NM_009923	12799.0	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93485236-2	chr10	93484714	93485714	+	972.583374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001313897)	TTS (NM_001313897)	-3554.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	51.0	48.5	51.0	63.5	140.5	102.5
Merged-chr4-16120861-4	chr4	16120360	16121360	+	972.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42783.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-17982858-4	chr13	17982363	17983363	+	972.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10488.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-107269408-4	chr8	107268869	107269869	+	972.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).3	MTE2b|LTR|ERVL-MaLR	13205.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131235115-4	chr2	131234618	131235618	+	972.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144888, intron 1 of 6)	intron (NM_144888, intron 1 of 6)	1055.0	NM_144888	228607.0	Mm.287226	NM_144888	ENSMUSG00000037523	Mavs	D430028G21Rik|IPS-1|Visa|cardif	mitochondrial antiviral signaling protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5809076-4	chr19	5808556	5809556	+	972.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6384.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67213852-4	chr17	67213363	67214363	+	972.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	140596.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.0	2.5	6.0	9.0	4.5	7.0
Merged-chr7-80064463-4	chr7	80063959	80064959	+	972.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045695, intron 2 of 2)	intron (NR_045695, intron 2 of 2)	10798.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	22.0	34.0	35.5	14.0	59.0	35.5
Merged-chr10-20666757-4	chr10	20666253	20667253	+	972.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 1 of 12)	intron (NM_013875, intron 1 of 12)	58325.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107832970-4	chr13	107832465	107833465	+	972.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	ORR1B2|LTR|ERVL-MaLR	57099.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	16.0	54.5	41.0	23.5	30.0	41.5
Merged-chr4-145218044-4	chr4	145217567	145218567	+	972.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 9 of 9)	intron (NM_011610, intron 9 of 9)	-23062.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122994641-4	chr5	122994153	122995153	+	972.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045820, intron 2 of 2)	intron (NR_045820, intron 2 of 2)	5299.0	NR_045820	109202.0	Mm.30769	NM_175405	ENSMUSG00000056735	A930024E05Rik	-	RIKEN cDNA A930024E05 gene	ncRNA	6.0	4.0	10.0	14.0	2.5	9.0
Merged-chr11-40135215-3	chr11	40134706	40135706	+	972.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	557476.0	NM_134017	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	2.5	6.0	8.0	1.5	13.5	4.0
Merged-chr3-55549593-3	chr3	55549105	55550105	+	972.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87877.0	NM_001357476	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107526787-3	chr9	107526267	107527267	+	972.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020263, exon 36 of 39)	exon (NM_020263, exon 36 of 39)	-7178.0	NM_019704	56395.0	Mm.260153	NM_019704	ENSMUSG00000010045	Tmem115	C78915|Pl6|Pp6	transmembrane protein 115	protein-coding	1.0	1.0	0.0	0.5	0.0	2.5
Merged-chr5-136173772-4	chr5	136173307	136174307	+	972.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3151.0	NM_178751	269717.0	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106308374-4	chr9	106307882	106308882	+	972.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 9 of 10)	intron (NM_027354, intron 9 of 10)	27321.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	87.5	144.0	92.0	55.5	87.0	72.0
Merged-chr4-135236878-4	chr4	135236374	135237374	+	972.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 2 of 5)	intron (NM_013885, intron 2 of 5)	35886.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80457465-4	chr7	80456951	80457951	+	972.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042527, intron 21 of 21)	MIR3|SINE|MIR	-52015.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	4.5	8.0	20.0	1.0	8.0	17.5
Merged-chr3-27691649-4	chr3	27691158	27692158	+	972.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 1 of 26)	intron (NM_001356953, intron 1 of 26)	18794.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152086811-6	chr4	152086309	152087309	+	972.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104381)	promoter-TSS (NR_104381)	-54.0	NR_104381	269608.0	Mm.332102	NM_001004156	ENSMUSG00000039713	Plekhg5	BC023181|Syx	pleckstrin homology domain containing, family G (with RhoGef domain) member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91089230-4	chr2	91088753	91089753	+	972.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7425.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-93736830-4	chr11	93736332	93737332	+	972.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	148934.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128500284-2	chr10	128499784	128500784	+	972.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_131151, intron 1 of 1)	ID|SINE|ID	1037.0	NR_131151	654440.0	Mm.441262	NR_131150	ENSMUSG00000097353	A430046D13Rik	-	Riken cDNA A430046D13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94289844-2	chr16	94289344	94290344	+	972.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139145, intron 1 of 10)	intron (NM_139145, intron 1 of 10)	447.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46607694-4	chr19	46607202	46608202	+	972.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177812, intron 2 of 4)	intron (NM_001177812, intron 2 of 4)	8596.0	NM_146099	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	48.5	77.0	47.0	6.5	42.0	24.5
Merged-chr1-121430435-2	chr1	121429878	121430878	+	972.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025156)	promoter-TSS (NM_001025156)	-689.0	NM_001025156	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	37.5	58.0	81.0	21.5	19.5	28.0
Merged-chr4-116074293-2	chr4	116073793	116074793	+	972.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153521)	promoter-TSS (NM_153521)	777.0	NM_025641	66576.0	Mm.181721	NM_025641	ENSMUSG00000063882	Uqcrh	2210416J04Rik|2310021J10Rik|2610041P16Rik	ubiquinol-cytochrome c reductase hinge protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-36853374-3	chr3	36852892	36853892	+	972.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_A|LINE|L1	-9714.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32957212-2	chr19	32956712	32957712	+	972.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	199635.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-137824880-2	chr6	137824380	137825380	+	972.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172733, intron 6 of 8)	intron (NM_172733, intron 6 of 8)	70303.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-171719393-2	chr2	171718893	171719893	+	972.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	243406.0	NR_040509	75655.0	Mm.396203	NR_040509	ENSMUSG00000086823	1700028P15Rik	-	RIKEN cDNA 1700028P15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143017996-2	chr7	143017496	143018496	+	972.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020286, intron 7 of 7)	intron (NM_020286, intron 7 of 7)	12337.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82764641-2	chr18	82764141	82765141	+	972.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5602.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-55964145-2	chr17	55963645	55964645	+	972.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_028381, exon 4 of 8)	exon (NM_028381, exon 4 of 8)	-4744.0	NR_108021	100504333.0	Mm.391908	NR_108021	ENSMUSG00000097077	Gm16712	-	predicted gene, 16712	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42150036-2	chr19	42149536	42150536	+	972.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183195, intron 1 of 1)	intron (NM_183195, intron 1 of 1)	2647.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17000120-4	chr12	16999606	17000606	+	972.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172574)	promoter-TSS (NM_172574)	12.0	NM_172574	217430.0	Mm.379451	NM_172574	ENSMUSG00000045679	Pqlc3	C78076|E030024M05Rik	PQ loop repeat containing	protein-coding	0.0	0.0	0.0	5.5	5.5	4.5
Merged-chr11-116274546-2	chr11	116274052	116275052	+	972.5	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146032)	promoter-TSS (NM_146032)	-335.0	NM_146032	217337.0	Mm.29655	NM_146032	ENSMUSG00000020780	Srp68	2610024I03Rik	signal recognition particle 68	protein-coding	40.5	111.5	79.0	50.0	90.5	79.5
Merged-chr16-33920176-2	chr16	33919676	33920676	+	972.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010580, exon 10 of 15)	exon (NM_010580, exon 10 of 15)	46862.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73814238-2	chr13	73813738	73814738	+	972.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 24 of 24)	intron (NM_001360694, intron 24 of 24)	33393.0	NM_028186	72293.0	Mm.45506	NM_028186	ENSMUSG00000021567	Nkd2	2210403L10Rik|AW212591|mNkd2	naked cuticle 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53029199-2	chr4	53028699	53029699	+	972.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17319.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-37884969-2	chr18	37884469	37885469	+	972.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007858, intron 16 of 26)	intron (NM_007858, intron 16 of 26)	-30309.0	NR_105945	102465592.0		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-20890593-3	chr1	20890097	20891097	+	972.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040492)	promoter-TSS (NR_040492)	49.0	NM_028829	74229.0	Mm.40780	NM_028829	ENSMUSG00000025931	Paqr8	1700019B16Rik|3110001D06Rik	progestin and adipoQ receptor family member VIII	protein-coding	3.0	6.5	3.5	2.5	7.0	12.0
Merged-chr12-91008398-4	chr12	91007893	91008893	+	972.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181815, intron 25 of 25)	intron (NM_181815, intron 25 of 25)	-37455.0	NR_045858	71349.0	Mm.442093	NR_045858	ENSMUSG00000085004	5430427M07Rik	-	RIKEN cDNA 5430427M07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94645516-4	chr10	94645085	94646085	+	972.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	43028.0	NR_015524	67723.0	Mm.116284	NR_015524		Cep83os	4932415G12Rik|Ccdc41os1	centrosomal protein 83, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44599687-6	chr10	44599151	44600151	+	972.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140903.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100729471-4	chr15	100728945	100729945	+	972.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161767)	promoter-TSS (NM_001161767)	-69.0	NM_172451	207839.0	Mm.22969	NM_172451	ENSMUSG00000037280	Galnt6	4632410F13|AW047994|GalNAc-T6	polypeptide N-acetylgalactosaminyltransferase 6	protein-coding	98.5	196.0	162.5	86.0	193.0	206.5
Merged-chr6-84590459-4	chr6	84589973	84590973	+	972.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175475, intron 1 of 6)	intron (NM_175475, intron 1 of 6)	3337.0	NM_175475	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119103149-4	chr9	119102646	119103646	+	972.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177117, intron 1 of 36)	intron (NM_177117, intron 1 of 36)	668.0	NM_177117	320256.0	Mm.110648	NM_177117	ENSMUSG00000038060	Dlec1	D630005C06Rik	deleted in lung and esophageal cancer 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35425260-3	chr17	35424735	35425735	+	972.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023124, exon 2 of 5)	exon (NM_023124, exon 2 of 5)	358.0	NM_207648	110557.0	Mm.439827	NM_207648	ENSMUSG00000073409	H2-Q6	0610037M15Rik|H-2Q6|Qa-6|Qa6	histocompatibility 2, Q region locus 6	protein-coding	7.5	35.5	15.5	8.0	47.0	22.0
Merged-chr9-121846870-3	chr9	121846398	121847398	+	972.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER2|DNA|TcMar-Tigger	-7437.0	NM_028384	100502861.0	Mm.335550	NM_028384	ENSMUSG00000079235	Ccdc13	2900041A11Rik|Gm188	coiled-coil domain containing 13	protein-coding	22.0	3.5	9.5	7.5	12.5	13.5
Merged-chr7-44262943-4	chr7	44262452	44263452	+	972.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1474.0	NR_152170	628854.0	Mm.451981	NR_152170		Gm15517	-	predicted gene 15517	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83277603-7	chr17	83277045	83278045	+	972.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62262.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-143074161-4	chr6	143073695	143074695	+	972.4249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362117, intron 7 of 26)	intron (NM_001362117, intron 7 of 26)	25957.0	NM_001362118	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58652745-4	chr1	58652295	58653295	+	972.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045007, intron 1 of 1)	intron (NR_045007, intron 1 of 1)	154.0	NR_045007	100504501.0	Mm.440933	NR_045007	ENSMUSG00000102059	Gm20257	-	caspase 8 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-104794635-4	chr13	104794142	104795142	+	972.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360094, intron 9 of 13)	intron (NM_001360094, intron 9 of 13)	22311.0	NM_026072	67285.0	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5493511-4	chr17	5492971	5493971	+	972.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_146073, exon 1 of 9)	exon (NM_146073, exon 1 of 9)	871.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-17002575-4	chr7	17002081	17003081	+	972.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7993.0	NM_001101535	434130.0	Mm.459162	NM_001101535	ENSMUSG00000041117	Ccdc8	-	coiled-coil domain containing 8	protein-coding	11.5	1.5	3.5	4.0	5.5	2.5
Merged-chr1-36279349-4	chr1	36278857	36279857	+	972.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5932.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51353526-2	chr3	51353026	51354026	+	972.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-12882.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152081975-4	chr2	152081464	152082464	+	972.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001160410, exon 1 of 2)	5' UTR (NM_001160410, exon 1 of 2)	435.0	NM_001160410	545474.0	Mm.214317	NM_001160410	ENSMUSG00000060257	Scrt2	AW060659	scratch family zinc finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25874883-4	chr17	25874410	25875410	+	972.392822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026686)	promoter-TSS (NM_026686)	-590.0	NM_026686	68347.0	Mm.35098	NM_026686	ENSMUSG00000025731	Mettl26	0610011F06Rik	methyltransferase like 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98801615-3	chr11	98801113	98802113	+	972.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001361932)	TTS (NM_001361932)	2959.0	NM_001361934	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124493641-4	chr5	124493190	124494190	+	972.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021430, exon 7 of 7)	3' UTR (NM_021430, exon 7 of 7)	10535.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97993100-4	chr15	97992596	97993596	+	972.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113515, intron 15 of 52)	intron (NM_001113515, intron 15 of 52)	11628.0	NM_031163	12824.0	Mm.2423	NM_031163	ENSMUSG00000022483	Col2a1	Col2|Col2a|Col2a-1|Del1|Dmm|Lpk|Rgsc856	collagen, type II, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110615386-4	chr7	110614894	110615894	+	972.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177324)	promoter-TSS (NM_177324)	-474.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167678998-2	chr2	167678498	167679498	+	972.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9917.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96967761-4	chr11	96967268	96968268	+	972.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030220, intron 1 of 6)	intron (NM_030220, intron 1 of 6)	9920.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49306946-4	chr13	49306443	49307443	+	972.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 1 of 17)	intron (NM_015759, intron 1 of 17)	2265.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38511899-4	chr2	38511451	38512451	+	972.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159631)	promoter-TSS (NM_001159631)	75.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90895900-2	chr5	90895400	90896400	+	972.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	4655.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0.0	0.0	6.0	3.0	8.5	1.5
Merged-chr2-152738005-7	chr2	152737568	152738568	+	972.357117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010495)	TTS (NM_010495)	1817.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135540470-4	chr1	135539969	135540969	+	972.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173437, intron 1 of 28)	intron (NM_173437, intron 1 of 28)	44886.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84286315-4	chr10	84285801	84286801	+	972.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	154170.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61564221-3	chr11	61563728	61564728	+	972.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252189, intron 1 of 8)	intron (NM_001252189, intron 1 of 8)	15459.0	NM_010148	13855.0	Mm.139695	NM_010148	ENSMUSG00000001036	Epn2	9530051D10Rik|AA536924|Ibp2	epsin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-9463809-5	chr15	9463308	9464308	+	972.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029341, intron 4 of 4)	intron (NM_029341, intron 4 of 4)	27780.0	NM_029341	75568.0	Mm.82143	NM_029341	ENSMUSG00000039676	Capsl	1700028N11Rik|AW125205	calcyphosine-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81810270-4	chr15	81809801	81810801	+	972.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153484, intron 1 of 3)	intron (NM_153484, intron 1 of 3)	-1113.0	NM_017376	21685.0	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4133122-1	chr12	4132622	4133622	+	972.3333130000001	f0_balb.idr	promoter-TSS (NM_001159536)	promoter-TSS (NM_001159536)	-275.0	NM_001159537	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-42574354-4	chr13	42573857	42574857	+	972.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106442.0	NM_001302635	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-71353903-3	chr10	71353409	71354409	+	972.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027184, intron 1 of 5)	intron (NM_027184, intron 1 of 5)	6146.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87521425-4	chr6	87520889	87521889	+	972.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	ORR1F|LTR|ERVL-MaLR	11870.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	2.5	3.0	2.0	1.0	2.5	2.5
Merged-chr11-11686759-2	chr11	11686259	11687259	+	972.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025597, intron 1 of 7)	intron (NM_001025597, intron 1 of 7)	834.0	NM_001025597	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5705088-4	chr19	5704599	5705599	+	972.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010609, intron 1 of 2)	intron (NM_010609, intron 1 of 2)	628.0	NM_010609	16530.0	Mm.440033	NM_010609	ENSMUSG00000024936	Kcnk7	2310014G03Rik|Kcnk6|Kcnk8|Knot|Mlk3	potassium channel, subfamily K, member 7	protein-coding	2.5	0.0	2.5	0.5	0.0	0.0
Merged-chr6-114874384-7	chr6	114873888	114874888	+	972.2958980000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 3 of 5)	intron (NM_001356371, intron 3 of 5)	47433.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-5872253-4	chr15	5871765	5872765	+	972.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	172439.0	NR_155428	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20645431-4	chr18	20644940	20645940	+	972.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155534, intron 1 of 2)	RMER5|LTR|ERV1	-19810.0	NM_013697	22139.0	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31880619-4	chr5	31880131	31881131	+	972.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 6 of 11)	MTD|LTR|ERVL-MaLR	182581.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24781268-4	chr5	24780762	24781762	+	972.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-23419.0	NM_153076	214301.0	Mm.63484	NM_153076	ENSMUSG00000038135	Crygn	-	crystallin, gamma N	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120796358-4	chr8	120795858	120796858	+	972.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57719.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34725551-3	chr19	34725048	34726048	+	972.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172838, intron 1 of 6)	intron (NM_172838, intron 1 of 6)	21563.0	NM_172838	240638.0	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	1.5	1.0	2.0	0.0	5.0	7.0
Merged-chr8-105856106-3	chr8	105855752	105856752	+	972.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021513, exon 1 of 1)	exon (NM_021513, exon 1 of 1)	1149.0	NM_021513	59016.0	Mm.286598	NM_021513	ENSMUSG00000036442	Thap11	2810036E22Rik|AB041579|CTG-B43a|CTG-B45d|Ronin	THAP domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32011360-3	chr4	32010870	32011870	+	972.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009316, intron 14 of 16)	L1MA5A|LINE|L1	47263.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	10.0	0.0	3.0	4.5	2.5	0.5
Merged-chr8-6119655-3	chr8	6119172	6120172	+	972.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1014385.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	2.0	19.5	7.0	3.5	5.0	2.5
Merged-chr13-43549959-4	chr13	43549454	43550454	+	972.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081059, intron 4 of 8)	intron (NM_001081059, intron 4 of 8)	10237.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	24.5	59.5	29.0	12.5	58.5	43.5
Merged-chr13-97442508-4	chr13	97442003	97443003	+	972.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110432, intron 1 of 1)	intron (NR_110432, intron 1 of 1)	7533.0	NR_110432	100039691.0	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124477342-4	chr5	124476846	124477846	+	972.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030259, intron 1 of 3)	B3|SINE|B2	889.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76283507-4	chr16	76283007	76284007	+	972.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89542.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-176708165-4	chr2	176707651	176708651	+	972.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001099327)	promoter-TSS (NM_001099327)	-202.0	NM_001099327	100043387.0	Mm.444048	NM_001099327	ENSMUSG00000078878	Gm14305	-	predicted gene 14305	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-69538474-4	chr13	69537975	69538975	+	972.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4611.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	0.0	2.0	1.5	27.5	23.0	21.0
Merged-chr8-121580627-4	chr8	121580138	121581138	+	972.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1832.0	NM_133765	76454.0	Mm.24829	NM_133765	ENSMUSG00000052934	Fbxo31	1110003O08Rik|2310046N15Rik|Fbx14|Fbxo14	F-box protein 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28175530-4	chr7	28175011	28176011	+	972.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007991, intron 4 of 8)	intron (NM_007991, intron 4 of 8)	-3972.0	NM_001037957	13549.0	Mm.57249	NM_010092	ENSMUSG00000002409	Dyrk1b	Mirk	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20948446-2	chr10	20947946	20948946	+	972.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-4101.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-137302749-4	chr6	137302257	137303257	+	972.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 1 of 26)	intron (NM_011216, intron 1 of 26)	50458.0	NM_001164401	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	6.5	2.0	10.5	2.0	0.0	0.5
Merged-chr14-76703640-4	chr14	76703191	76704191	+	972.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26123.0	NR_015485	73272.0	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA	4.0	8.5	10.5	3.5	9.5	1.0
Merged-chr12-44283546-3	chr12	44283029	44284029	+	972.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026164, exon 2 of 10)	exon (NM_026164, exon 2 of 10)	14375.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-160861371-3	chr1	160860873	160861873	+	972.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45038.0	NM_001024952	381305.0	Mm.329667	NM_001024952	ENSMUSG00000040423	Rc3h1	5730557L09Rik|Gm551|N28103|mKIAA2025	RING CCCH (C3H) domains 1	protein-coding	1.0	0.0	6.5	11.0	11.5	6.5
Merged-chr13-85376545-4	chr13	85375993	85376993	+	972.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87007.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	25.5	11.5	16.0	12.5	7.5	10.5
Merged-chr10-59969966-4	chr10	59969522	59970522	+	972.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18252.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-10910657-4	chr8	10910170	10911170	+	972.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10748.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5713720-4	chr19	5713224	5714224	+	972.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114595, intron 11 of 17)	intron (NM_001114595, intron 11 of 17)	9253.0	NM_010609	16530.0	Mm.440033	NM_010609	ENSMUSG00000024936	Kcnk7	2310014G03Rik|Kcnk6|Kcnk8|Knot|Mlk3	potassium channel, subfamily K, member 7	protein-coding	16.5	38.5	29.5	16.5	21.0	21.5
Merged-chr5-30871955-4	chr5	30871434	30872434	+	972.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144525, intron 4 of 16)	intron (NM_144525, intron 4 of 16)	2355.0	NM_144525	68796.0	Mm.205169	NM_144525	ENSMUSG00000038828	Tmem214	1110039B18Rik|4921530J21Rik|AI841294|AU018742|C76280	transmembrane protein 214	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165881119-4	chr2	165880608	165881608	+	972.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252587, intron 1 of 11)	intron (NM_001252587, intron 1 of 11)	1170.0	NM_001281926	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	23.5	104.0	51.0	19.0	91.5	65.5
Merged-chr9-7785785-4	chr9	7785303	7786303	+	972.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152989, intron 3 of 5)	intron (NR_152989, intron 3 of 5)	1413.0	NR_049191	100885830.0		NR_049191	ENSMUSG00000093615	Mir5618	Gm23685|mmu-mir-5618	microRNA 5618	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88593434-4	chr3	88592936	88593936	+	972.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13828.0	NM_025448	66256.0	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|SSR-beta|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163645815-5	chr2	163645260	163646260	+	972.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012032)	promoter-TSS (NM_012032)	-617.0	NM_012032	26943.0	Mm.218473	NM_012032	ENSMUSG00000017707	Serinc3	AA959945|AA960047|AIGP1|DIFF33|TMS-1|Tde1	serine incorporator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-63129659-4	chr11	63129149	63130149	+	972.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302261, intron 1 of 3)	intron (NM_001302261, intron 1 of 3)	667.0	NM_001302261	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67427693-7	chr5	67427181	67428181	+	972.1904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001164806, exon 1 of 5)	5' UTR (NM_001164806, exon 1 of 5)	118.0	NM_001164806	666938.0	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	0.0	0.0	6.5	4.5	8.5	9.0
Merged-chr7-113197354-4	chr7	113196786	113197786	+	972.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10179.0	NM_001243048	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	14.5	8.0	0.5	0.0	0.0	2.0
Merged-chr17-69396415-4	chr17	69395937	69396937	+	972.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12633.0	NM_009547	22666.0	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25487184-4	chr14	25486700	25487700	+	972.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	28015.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-27176983-4	chr8	27176475	27177475	+	972.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2329.0	NM_001080813	75767.0	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-190927945-4	chr1	190927445	190928445	+	972.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357131)	promoter-TSS (NM_001357131)	-545.0	NM_001357132	52477.0	Mm.289914	NM_021421	ENSMUSG00000026634	Angel2	2610307I21Rik|5730410O10Rik|AI845692|D1Ertd396e|D1Ertd654e	angel homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4247477-4	chr18	4246972	4247972	+	972.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	81640.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134090516-4	chr6	134090024	134091024	+	972.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	54824.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	15.5	10.5	11.0	11.0	9.5	11.5
Merged-chr11-5732880-4	chr11	5732410	5733410	+	972.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361588, intron 1 of 6)	intron (NM_001361588, intron 1 of 6)	8266.0	NM_001361590	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	25.0	12.5	31.0	9.0	54.0	10.5
Merged-chr11-100360411-4	chr11	100359914	100360914	+	972.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-4273.0	NM_010404	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126481901-2	chr7	126481401	126482401	+	972.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5454.0	NM_172745	233870.0	Mm.197829	NM_172745	ENSMUSG00000073838	Tufm	2300002G02Rik|C76308|C76389|EF-TuMT|EFTU	Tu translation elongation factor, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-12483224-2	chr4	12482724	12483724	+	972.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-311209.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134765249-4	chr4	134764742	134765742	+	972.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145554, intron 1 of 8)	B1_Mus2|SINE|Alu	2762.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-88924507-3	chr18	88923988	88924988	+	972.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30281.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87397326-4	chr17	87396831	87397831	+	972.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029298, intron 5 of 6)	intron (NM_029298, intron 5 of 6)	30410.0	NM_029298	75467.0	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-54668926-4	chr3	54668416	54669416	+	972.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23899.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	14.5	19.5	15.5	12.0	25.5	7.5
Merged-chr5-148477745-4	chr5	148477274	148478274	+	972.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	73899.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43466137-4	chr4	43465635	43466635	+	972.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11509.0	NM_007654	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	52.5	130.5	66.0	78.5	74.5	86.0
Merged-chr14-74848332-4	chr14	74847834	74848834	+	972.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 2 of 19)	intron (NM_001033439, intron 2 of 19)	99543.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-48767995-4	chr2	48767484	48768484	+	972.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-46125.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-34195667-4	chr12	34195175	34196175	+	972.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 23 of 27)	MusHAL1|LINE|L1	238004.0	NM_011658	22160.0	Mm.3280	NM_011658	ENSMUSG00000035799	Twist1	M-Twist|Pde|Ska10|Ska<m10Jus>|Twist|bHLHa38|pdt	twist basic helix-loop-helix transcription factor 1	protein-coding	4.5	5.5	9.5	2.0	6.5	10.0
Merged-chr2-163743459-4	chr2	163742971	163743971	+	972.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001272052, intron 1 of 11)	intron (NM_001272052, intron 1 of 11)	6768.0	NM_007398	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84674905-3	chr3	84674402	84675402	+	972.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177260, intron 1 of 6)	U8|snRNA|snRNA	8710.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134076869-6	chr1	134076347	134077347	+	972.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007570, exon 2 of 2)	3' UTR (NM_007570, exon 2 of 2)	2308.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-112299877-3	chr7	112299390	112300390	+	972.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001193305, intron 3 of 25)	intron (NM_001193305, intron 3 of 25)	-68418.0	NM_027587	100504195.0	Mm.291129	NM_027587	ENSMUSG00000030771	Micalcl	4921517J23Rik	MICAL C-terminal like	protein-coding	1.0	1.5	1.0	7.0	0.0	0.0
Merged-chr5-147051065-3	chr5	147050561	147051561	+	972.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	25511.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	9.5	29.0	16.5	5.5	39.0	23.0
Merged-chr8-120110432-4	chr8	120109905	120110905	+	972.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3747.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95658141-4	chr3	95657639	95658639	+	972.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008562)	promoter-TSS (NM_008562)	-582.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34132628-4	chr7	34132129	34133129	+	972.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_207212, exon 1 of 8)	exon (NM_207212, exon 1 of 8)	639.0	NM_207212	101543.0	Mm.422738	NM_207212	ENSMUSG00000036459	Wtip	-	WT1-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-14864750-4	chr4	14864254	14865254	+	972.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028264, intron 1 of 6)	intron (NM_028264, intron 1 of 6)	535.0	NM_028264	72519.0	Mm.279158	NM_028264	ENSMUSG00000028221	Tmem55a	2610319K07Rik|AI315591|AV001360|Pip4p2	transmembrane protein 55A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35452606-3	chr2	35452096	35453096	+	972.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	8853.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61854409-7	chr11	61853913	61854913	+	972.0714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013881, intron 1 of 26)	CpG	679.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3194219-4	chr11	3193720	3194720	+	972.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030207)	promoter-TSS (NM_030207)	-757.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50775405-4	chr9	50774993	50775993	+	972.0595089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133981, exon 1 of 15)	exon (NM_133981, exon 1 of 15)	268.0	NR_045601	102580.0	Mm.160035	NM_133981	ENSMUSG00000032059	Alg9	8230402H15Rik|AI747665|B430313H07Rik|Dibd1	asparagine-linked glycosylation 9 (alpha 1,2 mannosyltransferase)	protein-coding	26.5	40.5	28.5	15.0	67.0	9.0
Merged-chr4-124802080-4	chr4	124801584	124802584	+	972.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008636)	promoter-TSS (NM_008636)	-465.0	NM_008636	17764.0	Mm.272397	NM_008636	ENSMUSG00000028890	Mtf1	MTF-1|Thyls	metal response element binding transcription factor 1	protein-coding	23.0	64.5	29.0	38.5	49.0	33.5
Merged-chr7-99976537-4	chr7	99976044	99977044	+	972.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175388, intron 1 of 5)	intron (NM_175388, intron 1 of 5)	3914.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	6.5	10.0	2.5	2.0	8.0	2.5
Merged-chr5-43181664-4	chr5	43181169	43182169	+	972.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 5 of 7)	intron (NR_028417, intron 5 of 7)	-51794.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	5.5	21.5	23.5	9.5	21.5	25.5
Merged-chr4-53239072-4	chr4	53238573	53239573	+	972.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-7123.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75513502-4	chr11	75513005	75514005	+	972.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004157)	promoter-TSS (NM_001004157)	-36.0	NM_001004157	380713.0	Mm.10486	NM_001004157	ENSMUSG00000038188	Scarf1	AA986099|SREC|SREC-I|mKIAA0149	scavenger receptor class F, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41628260-5	chr4	41627742	41628742	+	972.0285640000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175138, intron 13 of 19)	(CA)n|Simple_repeat|Simple_repeat	12060.0	NM_027147	69638.0	Mm.372459	NM_027147	ENSMUSG00000028445	Enho	1110065P19Rik|2310040A07Rik	energy homeostasis associated	protein-coding	4.5	10.0	4.0	1.5	11.0	2.5
Merged-chr7-17074076-2	chr7	17073576	17074576	+	972.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007676)	promoter-TSS (NM_007676)	36.0	NM_007676	26436.0	Mm.143686	NM_007676	ENSMUSG00000066760	Psg16	Cea11|PSG|bCEA	pregnancy specific glycoprotein 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100583309-4	chr5	100582803	100583803	+	972.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11098.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	2.0	12.0	10.0	2.0	13.0	6.5
Merged-chr2-31075363-4	chr2	31074877	31075877	+	972.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	21123.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-7294803-2	chr7	7294256	7295256	+	972.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001302386, exon 4 of 11)	exon (NM_001302386, exon 4 of 11)	4080.0	NM_001302386	12727.0	Mm.297883	NM_011334	ENSMUSG00000000605	Clcn4	Clc4-2|Clcn4-2|clC-4	chloride channel, voltage-sensitive 4	protein-coding	0.0	0.0	0.0	0.0	1.0	0.5
Merged-chr11-111101932-4	chr11	111101474	111102474	+	972.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	35810.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	15.0	9.5	17.0	19.5	34.0	11.5
Merged-chr4-132563499-4	chr4	132563019	132564019	+	972.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081211)	promoter-TSS (NM_001081211)	-548.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40193130-2	chr9	40192630	40193630	+	972.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153114, intron 1 of 6)	intron (NR_153114, intron 1 of 6)	814.0	NM_030713	80902.0	Mm.132196	NM_030713	ENSMUSG00000025602	Zfp202	C130037E22Rik|Znf202	zinc finger protein 202	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9878977-4	chr3	9878485	9879485	+	972.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45306.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	16.5	64.0	44.5	27.5	26.5	15.0
Merged-chr19-3706969-2	chr19	3706469	3707469	+	972.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1324.0	NM_001358256	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173783921-4	chr2	173783391	173784391	+	972.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019806, exon 6 of 6)	3' UTR (NM_019806, exon 6 of 6)	46320.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32787569-4	chr19	32787057	32788057	+	972.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 2 of 8)	MTC|LTR|ERVL-MaLR	29980.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	36.5	80.0	56.0	43.0	46.5	79.5
Merged-chr19-29504529-2	chr19	29504029	29505029	+	972.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015567, exon 4 of 4)	non-coding (NR_015567, exon 4 of 4)	17458.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180426858-2	chr1	180426358	180427358	+	972.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56646.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11475529-4	chr4	11475015	11476015	+	972.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10443.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45450745-2	chr7	45450245	45451245	+	972.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030678, intron 12 of 15)	B3|SINE|B2	9141.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-24619897-4	chr4	24619406	24620406	+	972.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355618, intron 9 of 9)	RMER15|LTR|ERVL	123455.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	1.0	4.5	6.0	2.0	4.0	6.5
Merged-chr11-22000715-2	chr11	22000215	22001215	+	972.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011023, intron 2 of 4)	intron (NM_011023, intron 2 of 4)	936.0	NM_011023	18423.0	Mm.129663	NM_011023	ENSMUSG00000005917	Otx1	A730044F23Rik|jv	orthodenticle homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76153501-2	chr14	76153001	76154001	+	972.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	42610.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99266142-5	chr10	99265719	99266719	+	972.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026268, exon 3 of 3)	exon (NM_026268, exon 3 of 3)	2988.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4154792-2	chr19	4154292	4155292	+	972.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011778)	TTS (NM_011778)	146.0	NM_016933	19265.0	Mm.271937	NM_016933	ENSMUSG00000045826	Ptprcap	AI605264|CD-45-AP|LPAP|LSM-1	protein tyrosine phosphatase, receptor type, C polypeptide-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-63155930-1	chr15	63155430	63156430	+	972.0	f0_balb.idr	Intergenic	Intergenic	323678.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	3.0	0.0	3.0	0.0	1.0	0.0
Merged-chr12-51593552-2	chr12	51593052	51594052	+	972.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007728, exon 1 of 11)	5' UTR (NM_007728, exon 1 of 11)	211.0	NM_001198835	12810.0	Mm.21325	NM_007728	ENSMUSG00000020953	Coch	AW122937|Coch-5B2|D12H14S564E	cochlin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-24617511-4	chr4	24617011	24618011	+	972.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033531, exon 10 of 10)	exon (NM_001033531, exon 10 of 10)	121060.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	0.0	0.0	6.5	0.5	8.5	9.0
Merged-chr13-54686564-2	chr13	54686064	54687064	+	972.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027396, intron 1 of 10)	intron (NR_027396, intron 1 of 10)	1244.0	NM_001146025	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	1.0	0.5	0.5	3.0	1.5	3.5
Merged-chr18-64488413-2	chr18	64487913	64488913	+	972.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007998, intron 1 of 10)	intron (NM_007998, intron 1 of 10)	685.0	NM_007998	14151.0	Mm.1070	NM_007998	ENSMUSG00000024588	Fech	AI894116|Fcl|fch	ferrochelatase	protein-coding	0.0	0.0	0.0	8.0	3.0	1.5
Merged-chr17-27053495-2	chr17	27052995	27053995	+	972.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3809.0	NM_080553	16440.0	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71268145-2	chr17	71267646	71268646	+	972.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357338, intron 4 of 7)	intron (NM_001357338, intron 4 of 7)	42865.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	4.0	5.5	2.5	4.5	9.0	8.0
Merged-chr12-55472272-2	chr12	55471772	55472772	+	972.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20375.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20398581-3	chr13	20398087	20399087	+	972.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 15 of 21)	intron (NM_080288, intron 15 of 21)	-74403.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84864878-4	chr1	84864382	84865382	+	971.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025386, intron 1 of 3)	intron (NM_025386, intron 1 of 3)	25041.0	NM_025386	66153.0	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11559811-4	chr19	11559284	11560284	+	971.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22935.0	NM_025658	66607.0	Mm.441056	NM_025658	ENSMUSG00000024678	Ms4a4d	2210417J23Rik	membrane-spanning 4-domains, subfamily A, member 4D	protein-coding	44.0	97.5	49.5	9.5	89.0	26.0
Merged-chr18-61211021-4	chr18	61210536	61211536	+	971.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007885, intron 1 of 3)	intron (NM_007885, intron 1 of 3)	560.0	NM_007885	13521.0	Mm.24803	NM_007885	ENSMUSG00000034320	Slc26a2	Dtd|ST-OB	solute carrier family 26 (sulfate transporter), member 2	protein-coding	4.0	0.0	0.5	0.0	0.0	0.0
Merged-chr11-110970659-4	chr11	110970152	110971152	+	971.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010604, intron 1 of 1)	MIRb|SINE|MIR	2619.0	NM_001252207	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	21.0	60.0	38.5	29.0	65.5	62.5
Merged-chr1-161076447-4	chr1	161075893	161076893	+	971.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131030, intron 2 of 4)	B1F2|SINE|Alu	5626.0	NR_131029	70454.0	Mm.248212	NM_027429	ENSMUSG00000026708	Cenpl	2610300B10Rik|AW121806|AW550697|CENP-L	centromere protein L	protein-coding	147.0	324.5	249.5	104.5	129.5	129.5
Merged-chr9-41122520-4	chr9	41122025	41123025	+	971.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	ID4|SINE|ID	35537.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	20.5	82.5	55.0	24.5	109.0	48.5
Merged-chr11-98051803-4	chr11	98051312	98052312	+	971.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146028, intron 1 of 10)	intron (NM_146028, intron 1 of 10)	1650.0	NM_146028	217154.0	Mm.181008	NM_146028	ENSMUSG00000017400	Stac2	24b2|24b2/STAC2|AW240854	SH3 and cysteine rich domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19118400-3	chr7	19117910	19118910	+	971.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1449.0	NM_175530	243867.0	Mm.230830	NM_175530	ENSMUSG00000050428	Fbxo46	20D7-FC4|4932704E22Rik|Fbxo34l	F-box protein 46	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56153914-4	chr17	56153406	56154406	+	971.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8585.0	NM_025566	66443.0	Mm.2312	NM_025566	ENSMUSG00000044469	Tnfaip8l1	2600017J23Rik|TIPE1	tumor necrosis factor, alpha-induced protein 8-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182369647-4	chr1	182369173	182370173	+	971.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28067.0	NM_175127	67948.0	Mm.30737	NM_175127	ENSMUSG00000047539	Fbxo28	4833428J17Rik|5730505P19Rik|D1Ertd578e|Fbx28|mKIAA0483	F-box protein 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21115933-4	chr19	21115449	21116449	+	971.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11239.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	3.0	25.0	21.0	12.5	28.5	15.0
Merged-chr10-41476424-4	chr10	41475915	41476915	+	971.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001164433, exon 1 of 23)	5' UTR (NM_001164433, exon 1 of 23)	101.0	NM_138315	171580.0	Mm.290431	NM_138315	ENSMUSG00000019823	Mical1	MICAL|MICAL-1|Nical	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55735307-4	chr14	55734799	55735799	+	971.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	10385.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-70990366-4	chr2	70989872	70990872	+	971.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 3 of 9)	intron (NM_145524, intron 3 of 9)	28002.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138229739-4	chr5	138229229	138230229	+	971.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001013773, exon 2 of 6)	5' UTR (NM_001013773, exon 2 of 6)	3825.0	NM_001013773	381680.0	Mm.156846	NM_001013773	ENSMUSG00000047592	Nxpe5	-	neurexophilin and PC-esterase domain family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-56506125-4	chr9	56505639	56506639	+	971.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87520.0	NM_025812	66867.0	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-79715762-4	chr7	79715229	79716229	+	971.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1543.0	NM_001291222	16576.0	Mm.101633	NM_010626	ENSMUSG00000050382	Kif7	-	kinesin family member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117873433-4	chr11	117872933	117873933	+	971.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027919)	promoter-TSS (NM_027919)	93.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146805185-4	chr5	146804694	146805694	+	971.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10238.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	25.0	56.5	36.5	14.0	68.0	36.0
Merged-chr1-181257074-5	chr1	181256586	181257586	+	971.914307	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45108.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-127015768-4	chr4	127015278	127016278	+	971.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5523.0	NR_045010	71514.0	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79611293-4	chr2	79610796	79611796	+	971.892822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24129.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	0.0	0.5	0.5	4.5	10.5	7.0
Merged-chr8-72485986-3	chr8	72485492	72486492	+	971.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177766, intron 4 of 5)	intron (NM_177766, intron 4 of 5)	6622.0	NM_177766	270066.0	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	36.5	57.0	52.0	4.5	19.0	12.0
Merged-chr7-66309528-5	chr7	66309053	66310053	+	971.888855	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 6 of 33)	MER89|LTR|ERV1	72171.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117320761-4	chr10	117320294	117321294	+	971.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27926.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142908278-4	chr5	142907846	142908846	+	971.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1592.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44109305-4	chr16	44108804	44109804	+	971.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358203, intron 6 of 14)	intron (NM_001358203, intron 6 of 14)	29955.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95641333-4	chr9	95640833	95641833	+	971.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 2 of 8)	intron (NM_029620, intron 2 of 8)	3705.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	18.0	16.5	12.5	9.0	27.5	9.5
Merged-chr5-3146759-4	chr5	3146260	3147260	+	971.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-197133.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104701150-4	chr3	104700643	104701643	+	971.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62479.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57424367-4	chr16	57423871	57424871	+	971.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	71094.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	4.5	20.5	26.5	3.0	23.0	11.0
Merged-chr11-116019354-6	chr11	116018821	116019821	+	971.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5183.0	NM_008211	15081.0	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	0.0	7.5	0.0	0.0	4.0	4.0
Merged-chr3-142527634-4	chr3	142527136	142528136	+	971.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2700.0	NM_001083312	229900.0	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	2.0	8.0	1.5	5.5	2.5	8.5
Merged-chr11-62646363-4	chr11	62645861	62646861	+	971.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198861, intron 1 of 3)	intron (NM_198861, intron 1 of 3)	1688.0	NM_001357955	192976.0	Mm.339972	NM_198861	ENSMUSG00000046417	Lrrc75a	Fam211a	leucine rich repeat containing 75A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-76565529-4	chr5	76565032	76566032	+	971.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359370, intron 17 of 19)	B3A|SINE|B2	-26182.0	NM_199032	381644.0	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135634071-4	chr1	135633592	135634592	+	971.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	36316.0	NR_151586	215714.0	Mm.472859	NM_175447		Gm4793	EG215714	predicted gene 4793	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-83946721-4	chr10	83946226	83947226	+	971.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153971.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-23851430-3	chr10	23850927	23851927	+	971.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011979)	promoter-TSS (NM_011979)	-35.0	NM_011979	26464.0	Mm.27334	NM_011979	ENSMUSG00000020010	Vnn3	-	vanin 3	protein-coding	10.5	8.0	18.0	2.0	0.0	1.5
Merged-chr19-44146431-4	chr19	44145937	44146937	+	971.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028607)	promoter-TSS (NM_028607)	9.0	NM_028607	73689.0	Mm.124685	NM_028607	ENSMUSG00000057506	Bloc1s2	2410089B13Rik|BLOS2|Bloc1s2a	biogenesis of lysosomal organelles complex-1, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-15924594-3	chr19	15924097	15925097	+	971.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205339)	promoter-TSS (NM_001205339)	25.0	NM_001205339	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	5.5	29.5	13.5	7.0	17.5	19.5
Merged-chr14-64834047-5	chr14	64833457	64834457	+	971.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 6 of 9)	intron (NM_177338, intron 6 of 9)	115900.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-14832235-4	chr9	14831728	14832728	+	971.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018736, intron 18 of 19)	intron (NM_018736, intron 18 of 19)	-27982.0	NM_001310734	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59381819-3	chr10	59381316	59382316	+	971.822205	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR1_Mm|LTR|ERVK	-21869.0	NM_023530	69836.0	Mm.30268	NM_023530	ENSMUSG00000009646	Pla2g12b	2010002E04Rik|Fksg71|Pla2g13|hlb218	phospholipase A2, group XIIB	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-103725907-4	chr5	103725365	103726365	+	971.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28297.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3515430-4	chr8	3514920	3515920	+	971.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015801)	promoter-TSS (NM_015801)	36.0	NM_015801	50767.0	Mm.23085	NM_015801	ENSMUSG00000004565	Pnpla6	AI661849|MSws|Nte	patatin-like phospholipase domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97026230-4	chr11	97025717	97026717	+	971.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_133649, exon 1 of 2)	non-coding (NR_133649, exon 1 of 2)	201.0	NR_133649	100127433.0	Mm.156282	NR_133649	ENSMUSG00000087067	Gm11532	Sp6os	predicted gene 11532	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191085104-4	chr1	191084519	191085519	+	971.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_198654)	TTS (NM_198654)	-13395.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	59.0	157.5	115.0	44.0	179.5	104.5
Merged-chr15-76879195-4	chr15	76878698	76879698	+	971.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358816)	promoter-TSS (NM_001358816)	-55.0	NM_145916	223669.0	Mm.38948	NM_145916	ENSMUSG00000033669	Zfp7	KRAB20|KRAB7|Krox-2|Zfp-7|Zfp65|Zfp80|Zfp86-rs1|mszf73-2	zinc finger protein 7	protein-coding	0.0	0.0	1.5	0.0	10.0	14.5
Merged-chr9-21989449-4	chr9	21988945	21989945	+	971.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023622)	promoter-TSS (NM_023622)	8.0	NM_023622	71746.0	Mm.110594	NM_023622	ENSMUSG00000040146	Rgl3	1300003D20Rik|mFLJ00153	ral guanine nucleotide dissociation stimulator-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76871373-3	chr15	76870851	76871851	+	971.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001007568)	promoter-TSS (NM_001007568)	84.0	NM_001007568	71591.0	Mm.38195	NM_001007568	ENSMUSG00000022526	Zfp251	9130001M19Rik|AV339307	zinc finger protein 251	protein-coding	4.0	7.0	15.0	18.0	16.0	14.0
Merged-chr1-85961113-4	chr1	85960596	85961596	+	971.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033290)	promoter-TSS (NM_001033290)	-41.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17655696-4	chr10	17655204	17656204	+	971.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67524.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	3.0	12.0	5.5	4.0	12.5	13.0
Merged-chr1-176224038-4	chr1	176223543	176224543	+	971.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357846, intron 1 of 8)	intron (NM_001357846, intron 1 of 8)	-10101.0	NM_001195816	319455.0	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding	7.0	26.0	15.0	15.0	30.5	5.0
Merged-chr15-80635031-4	chr15	80634581	80635581	+	971.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010815, intron 2 of 6)	intron (NM_010815, intron 2 of 6)	-10992.0	NR_105922	102466773.0		NR_105922	ENSMUSG00000098631	Mir6957	Gm27895|mmu-mir-6957	microRNA 6957	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-115746641-4	chr9	115746132	115747132	+	971.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-162823.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	0.5	0.0	15.5	0.0	11.0	0.5
Merged-chr10-127164783-4	chr10	127164289	127165289	+	971.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008080)	promoter-TSS (NM_008080)	-367.0	NR_045166	14421.0	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-26669021-4	chr14	26668521	26669521	+	971.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_106132)	TTS (NR_106132)	587.0	NR_106132	102465773.0		NR_106132	ENSMUSG00000098751	Mir7672	Gm27314|mmu-mir-7672	microRNA 7672	ncRNA	15.5	36.5	26.0	7.0	35.0	17.5
Merged-chr9-50529358-2	chr9	50528858	50529858	+	971.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011220)	promoter-TSS (NM_011220)	-717.0	NM_011220	19286.0	Mm.35856	NM_011220	ENSMUSG00000032067	Pts	PTPS	6-pyruvoyl-tetrahydropterin synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80560962-4	chr17	80560465	80561465	+	971.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360144, intron 1 of 9)	intron (NM_001360144, intron 1 of 9)	2869.0	NM_001033443	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-102906300-8	chr13	102905800	102906800	+	971.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	146045.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36962443-7	chr1	36961963	36962963	+	971.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22936.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-85369629-4	chr6	85369119	85370119	+	971.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003955, intron 1 of 5)	intron (NM_001003955, intron 1 of 5)	5015.0	NM_177466	52055.0	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-58657553-4	chr3	58657059	58658059	+	971.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	5517.0	NR_004433	666680.0	Mm.422212	NR_004433		Gm8234	AU022133	spermine synthase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-76352110-4	chr10	76351610	76352610	+	971.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008787, intron 41 of 41)	ORR1E|LTR|ERVL-MaLR	-6819.0	NM_001081419	64451.0	Mm.33183	NM_001081419	ENSMUSG00000020231	Dip2a	4931420H10Rik|AI426328|Dip2|Kiaa0184-hp|mKIAA0184	disco interacting protein 2 homolog A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-39641763-4	chr8	39641252	39642252	+	971.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113326, intron 1 of 9)	intron (NM_001113326, intron 1 of 9)	926.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	18.5	53.0	49.0	22.5	34.0	21.0
Merged-chr1-155322375-4	chr1	155321869	155322869	+	971.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011273, intron 7 of 14)	intron (NM_011273, intron 7 of 14)	95075.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-40855975-4	chr11	40855471	40856471	+	971.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-100685.0	NM_009831	12450.0	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	2.0	6.5	5.5	0.5	1.5	3.0
Merged-chr18-83423239-4	chr18	83422745	83423745	+	971.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97361.0	NR_045361	70960.0	Mm.410834	NR_045361		4921531P14Rik	1700108N05Rik	RIKEN cDNA 4921531P14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60712309-4	chr18	60711807	60712807	+	971.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348100, intron 2 of 14)	intron (NM_001348100, intron 2 of 14)	15259.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45661002-4	chr7	45660501	45661501	+	971.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271993, intron 1 of 2)	intron (NM_001271993, intron 1 of 2)	5393.0	NM_018876	14344.0	Mm.290046	NM_018876	ENSMUSG00000055978	Fut2	-	fucosyltransferase 2	protein-coding	0.0	0.0	1.0	0.0	0.0	0.5
Merged-chr7-43660880-4	chr7	43660390	43661390	+	971.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031181)	promoter-TSS (NM_031181)	-729.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83103201-4	chr8	83102755	83103755	+	971.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62097.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	118.5	251.0	210.5	118.5	289.5	289.5
Merged-chr11-85667729-4	chr11	85667235	85668235	+	971.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	52009.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21213978-4	chr5	21213480	21214480	+	971.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 5 of 26)	intron (NR_153365, intron 5 of 26)	27713.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94236917-4	chr16	94236424	94237424	+	971.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 5 of 10)	intron (NM_001360045, intron 5 of 10)	53367.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-116243250-4	chr8	116242757	116243757	+	971.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-261758.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35516282-2	chr17	35515782	35516782	+	971.6666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146248)	promoter-TSS (NM_146248)	542.0	NM_001163764	106795.0	Mm.11434	NM_025674	ENSMUSG00000050410	Tcf19	5730403J10Rik|AW495861	transcription factor 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51534822-4	chr10	51534321	51535321	+	971.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	43923.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50970697-3	chr9	50970238	50971238	+	971.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178710, intron 3 of 15)	intron (NM_178710, intron 3 of 15)	38335.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41502553-3	chr13	41502076	41503076	+	971.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-15216.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-90494327-3	chr6	90493829	90494829	+	971.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31753.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32492546-3	chr17	32491980	32492980	+	971.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177307, exon 14 of 14)	3' UTR (NM_177307, exon 14 of 14)	-13982.0	NM_001101445	208285.0	Mm.311422	NM_001101445	ENSMUSG00000091586	Cyp4f17	EG208285	cytochrome P450, family 4, subfamily f, polypeptide 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-83343373-4	chr10	83342865	83343865	+	971.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-5548.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-35515705-4	chr15	35515199	35516199	+	971.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177151, intron 17 of 61)	intron (NM_177151, intron 17 of 61)	144153.0	NM_177151	666173.0	Mm.309250	NM_177151	ENSMUSG00000037646	Vps13b	1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|mKIAA0532|mKIAA5032	vacuolar protein sorting 13B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33758146-4	chr17	33757632	33758632	+	971.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008997, intron 1 of 4)	intron (NM_008997, intron 1 of 4)	2354.0	NM_008997	19326.0	Mm.387587	NM_008997	ENSMUSG00000077450	Rab11b	A730055L17Rik	RAB11B, member RAS oncogene family	protein-coding	0.0	4.0	5.5	0.0	3.0	0.5
Merged-chr3-26932596-4	chr3	26932085	26933085	+	971.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029150, intron 10 of 10)	intron (NM_029150, intron 10 of 10)	221269.0	NM_007900	13605.0	Mm.261453	NM_007900	ENSMUSG00000027699	Ect2	AI528536	ect2 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9556546-3	chr3	9556037	9557037	+	971.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133218, intron 2 of 8)	intron (NM_133218, intron 2 of 8)	53548.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	11.5	16.0	5.5	7.5	3.5	8.5
Merged-chr16-33418076-3	chr16	33417569	33418569	+	971.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358569, intron 1 of 8)	MTE2b|LTR|ERVL-MaLR	17624.0	NM_001358569	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116653833-2	chr11	116653333	116654333	+	971.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_030206, exon 1 of 4)	exon (NM_030206, exon 1 of 4)	480.0	NM_030206	114886.0	Mm.34598	NM_030206	ENSMUSG00000020810	Cygb	3110001K20Rik|HGb|Staap	cytoglobin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131972710-4	chr1	131972194	131973194	+	971.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145977, intron 1 of 4)	intron (NM_145977, intron 1 of 4)	2085.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	3.5	46.0	31.0	14.5	27.0	27.0
Merged-chr10-86685505-4	chr10	86685007	86686007	+	971.65625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015572)	promoter-TSS (NR_015572)	-20.0	NR_015572	66263.0	Mm.392261	NR_015572	ENSMUSG00000097412	1810014B01Rik	-	RIKEN cDNA 1810014B01 gene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84482040-4	chr2	84481536	84482536	+	971.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR18B_MM|LTR|ERVK	-5261.0	NM_001177320	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52444128-4	chr3	52443638	52444638	+	971.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72826.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104574764-4	chr9	104574258	104575258	+	971.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	5275.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	3.0	14.0	13.0	13.0	23.0	25.0
Merged-chr8-120669053-4	chr8	120668539	120669539	+	971.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010926)	promoter-TSS (NM_010926)	719.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-133547050-4	chr3	133546533	133547533	+	971.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2643.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69266495-4	chr11	69265997	69266997	+	971.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29475.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146780147-4	chr5	146779611	146780611	+	971.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	B4A|SINE|B4	14845.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	18.5	45.5	22.0	14.5	17.5	11.5
Merged-chr10-9876026-4	chr10	9875558	9876558	+	971.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081344, intron 2 of 25)	MTC|LTR|ERVL-MaLR	24982.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	1.0	0.0	3.5	0.5	0.0	0.5
Merged-chr11-118227852-4	chr11	118227350	118228350	+	971.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-15108.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-28215477-7	chr6	28214973	28215973	+	971.619019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	46128.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34863522-16	chr18	34863001	34864001	+	971.6145630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007913, exon 2 of 2)	exon (NM_007913, exon 2 of 2)	2294.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-33912756-4	chr1	33912254	33913254	+	971.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276764, intron 2 of 102)	intron (NM_001276764, intron 2 of 102)	4529.0	NM_001276764	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97786175-4	chr15	97785644	97786644	+	971.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026353, intron 1 of 2)	intron (NM_026353, intron 1 of 2)	1779.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-28858194-3	chr13	28857692	28858692	+	971.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045054, intron 2 of 7)	intron (NR_045054, intron 2 of 7)	27230.0	NR_045054	72518.0	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59402027-4	chr2	59401524	59402524	+	971.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15342.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-57013597-2	chr19	57013097	57014097	+	971.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5022.0	NM_001177797	226250.0	Mm.226284	NM_146102	ENSMUSG00000025083	Afap1l2	AU041783|C86904|mKIAA1914	actin filament associated protein 1-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88280808-2	chr7	88280308	88281308	+	971.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009982, intron 1 of 6)	intron (NM_009982, intron 1 of 6)	2723.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46672925-4	chr8	46672409	46673409	+	971.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55618.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129462198-4	chr6	129461710	129462710	+	971.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_132130, exon 6 of 6)	non-coding (NR_132130, exon 6 of 6)	-10210.0	NM_175526	243653.0	Mm.131289	NM_175526	ENSMUSG00000033082	Clec1a	5930406N14Rik	C-type lectin domain family 1, member a	protein-coding	1.0	3.5	4.5	0.0	8.5	2.5
Merged-chr3-95174340-4	chr3	95173815	95174815	+	971.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011351)	TTS (NM_011351)	9976.0	NM_011351	20360.0	Mm.23662	NM_011351	ENSMUSG00000038777	Sema6c	Semay|mKIAA1869	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-80168305-4	chr2	80167804	80168804	+	971.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38646.0	NM_001355140	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	4.5	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96379229-4	chr10	96378744	96379744	+	971.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153037.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3721664-3	chr4	3721156	3722156	+	971.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	L1MC1|LINE|L1	6692.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	62.0	76.5	93.0	51.5	97.0	67.5
Merged-chr13-63246664-3	chr13	63246136	63247136	+	971.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	6607.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-109613951-4	chr7	109613439	109614439	+	971.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001326, intron 1 of 19)	intron (NM_001001326, intron 1 of 19)	2629.0	NR_037617	76954.0	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-13553863-4	chr13	13553371	13554371	+	971.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-36538.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-158076829-4	chr3	158076340	158077340	+	971.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40158.0	NM_001289524	67144.0	Mm.358704	NM_024194	ENSMUSG00000063052	Lrrc40	2610040E16Rik|AI837674	leucine rich repeat containing 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-31902466-4	chr11	31901984	31902984	+	971.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290678, intron 2 of 7)	intron (NM_001290678, intron 2 of 7)	31544.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	10.0	12.0	13.0	3.0	23.5	12.5
Merged-chr12-30597134-4	chr12	30596628	30597628	+	971.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12685.0	NM_172049	211986.0	Mm.34035	NM_172049	ENSMUSG00000043061	Tmem18	BC024093	transmembrane protein 18	protein-coding	14.5	10.5	0.0	0.0	0.0	7.5
Merged-chr16-20549036-2	chr16	20548536	20549536	+	971.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030670)	promoter-TSS (NR_030670)	433.0	NM_013852	27406.0	Mm.27135	NM_013852	ENSMUSG00000003234	Abcf3	AI326318|AU016058|BB119416	ATP-binding cassette, sub-family F (GCN20), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21952897-2	chr9	21952397	21953397	+	971.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2856.0	NM_025870	66962.0	Mm.46647	NM_025870	ENSMUSG00000051238	Swsap1	2310047B19Rik	SWIM type zinc finger 7 associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120916669-4	chr11	120916157	120917157	+	971.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027745, intron 3 of 18)	intron (NM_027745, intron 3 of 18)	16215.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8962473-2	chr4	8961973	8962973	+	971.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	211149.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	12.5	3.5	6.0	2.5	0.0	2.0
Merged-chr2-4876348-2	chr2	4875849	4876849	+	971.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5215.0	NM_175400	109079.0	Mm.34329	NM_175400	ENSMUSG00000026662	Sephs1	1110046B24Rik|AA589574|AI505014|AW111620|SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr2-153240287-2	chr2	153239787	153240787	+	971.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018807, intron 1 of 2)	intron (NM_018807, intron 1 of 2)	1071.0	NM_018807	54711.0	Mm.103199	NM_018807	ENSMUSG00000051413	Plagl2	AU018672|AW552839|mKIAA0198	pleiomorphic adenoma gene-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30557114-2	chr7	30556614	30557614	+	971.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001290569, exon 5 of 9)	exon (NM_001290569, exon 5 of 9)	2532.0	NM_029377	75660.0	Mm.379242	NM_029377	ENSMUSG00000036845	Lin37	1810054G18Rik	lin-37 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83666681-3	chr8	83666171	83667171	+	971.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013641)	promoter-TSS (NM_013641)	27.0	NM_013641	19216.0	Mm.213000	NM_013641	ENSMUSG00000019464	Ptger1	EP1|Ptgerep1	prostaglandin E receptor 1 (subtype EP1)	protein-coding	9.5	6.0	4.0	1.0	13.0	3.0
Merged-chr2-166615681-2	chr2	166615181	166616181	+	971.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 7 of 39)	intron (NM_177782, intron 7 of 39)	51159.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52297581-2	chr2	52297081	52298081	+	971.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010889, intron 27 of 156)	intron (NM_010889, intron 27 of 156)	6579.0	NR_040620	78049.0	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166446057-4	chr2	166445530	166446530	+	971.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1421.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49702235-2	chr11	49701735	49702735	+	971.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_212484, intron 2 of 11)	intron (NM_212484, intron 2 of 11)	419.0	NM_001290741	104625.0	Mm.247113	NM_212484	ENSMUSG00000020362	Cnot6	CCR4	CCR4-NOT transcription complex, subunit 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56775235-2	chr19	56774735	56775735	+	971.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38448.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	11.0	15.5	13.0	4.0	2.5	2.0
Merged-chr2-6359830-4	chr2	6359333	6360333	+	971.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181399, intron 1 of 13)	MER3|DNA|hAT-Charlie	7097.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54900560-4	chr14	54900038	54901038	+	971.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6395.0	NM_019402	54196.0	Mm.7723	NM_019402	ENSMUSG00000022194	Pabpn1	PAB2|Pabp3|mPABII	poly(A) binding protein, nuclear 1	protein-coding	7.5	27.0	12.0	1.0	28.0	8.5
Merged-chr11-29885386-4	chr11	29884881	29885881	+	971.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 5 of 41)	intron (NM_146016, intron 5 of 41)	-59713.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	2.0	16.0	10.0	0.5	19.5	6.0
Merged-chr12-85663013-2	chr12	85662513	85663513	+	971.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23707.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114912292-2	chr11	114911792	114912792	+	971.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	22094.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102828646-4	chr14	102828137	102829137	+	971.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153995.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-33824710-2	chr3	33824210	33825210	+	971.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026222, intron 11 of 19)	intron (NM_026222, intron 11 of 19)	19600.0	NM_026222	51938.0	Mm.275710	NM_026222	ENSMUSG00000027676	Ccdc39	4921507O14Rik|AI447426|AI844750|D3Ertd789e|b2b1304Clo|b2b1735Clo|b2b2025.1Clo|prh	coiled-coil domain containing 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76477833-2	chr15	76477333	76478333	+	971.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013481)	promoter-TSS (NM_013481)	471.0	NR_138589	15499.0	Mm.347444	NM_008296	ENSMUSG00000022556	Hsf1	AA960185|HSTF|HSTF 1|Hsf1alpha|Hsf1beta	heat shock factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95231329-2	chr3	95230829	95231829	+	971.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038708, intron 1 of 4)	intron (NM_001038708, intron 1 of 4)	2386.0	NM_001038708	57912.0	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8190072-2	chr17	8189572	8190572	+	971.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_201230, intron 9 of 11)	intron (NM_201230, intron 9 of 11)	24554.0	NM_201230	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-69225656-2	chr17	69225156	69226156	+	971.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	51550.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11503286-4	chr2	11502790	11503790	+	971.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	CpG	-1200.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66284617-2	chr15	66284121	66285121	+	971.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_152923, intron 1 of 14)	intron (NM_152923, intron 1 of 14)	1603.0	NM_152923	110862.0	Mm.255585	NM_152923	ENSMUSG00000056258	Kcnq3	-	potassium voltage-gated channel, subfamily Q, member 3	protein-coding	0.0	0.0	2.0	0.0	0.0	5.0
Merged-chr9-14274687-2	chr9	14274187	14275187	+	971.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1614.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101905278-2	chr11	101904778	101905778	+	971.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10924.0	NM_010791	17285.0	Mm.3404	NM_010791	ENSMUSG00000001493	Meox1	AI385561|D330041M02Rik|Mox-1|Mox1	mesenchyme homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6574722-4	chr15	6574127	6575127	+	971.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5220.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-44207777-2	chr12	44207277	44208277	+	971.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013760, intron 2 of 2)	intron (NM_013760, intron 2 of 2)	2291.0	NM_013760	27362.0	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8763519-4	chr19	8763032	8764032	+	971.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016813, intron 3 of 20)	intron (NM_016813, intron 3 of 20)	6415.0	NM_001276704	53319.0	Mm.7271	NM_016813	ENSMUSG00000010097	Nxf1	Mex67|Mvb1|Tap	nuclear RNA export factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43102203-4	chr5	43101700	43102700	+	971.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-131263.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	1.5	2.0	5.5	1.5	0.0	6.0
Merged-chr13-21945263-4	chr13	21944766	21945766	+	971.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360886, intron 1 of 5)	CpG	166.0	NM_001360886	193452.0	Mm.187446	NM_183014	ENSMUSG00000006720	Zfp184	4930500C15Rik	zinc finger protein 184 (Kruppel-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26237187-4	chr17	26236705	26237705	+	971.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	7037.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	24.0	64.0	66.0	47.0	60.5	76.0
Merged-chr19-41982972-4	chr19	41982464	41983464	+	971.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	MIR3|SINE|MIR	1201.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	12.5	49.0	27.0	14.5	36.5	31.5
Merged-chr4-130899541-4	chr4	130899049	130900049	+	971.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13785.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41530158-4	chr10	41529671	41530671	+	971.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016898, exon 6 of 6)	3' UTR (NM_016898, exon 6 of 6)	10671.0	NM_016898	53599.0	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105643207-3	chr4	105642691	105643691	+	971.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	485844.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	16.0	9.0	22.0	31.5	35.5	35.5
Merged-chr12-12316912-4	chr12	12316438	12317438	+	971.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 2 of 11)	MLTR14|LTR|ERV1	54799.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	10.0	59.5	31.5	17.0	29.0	30.5
Merged-chr12-40273502-4	chr12	40273011	40274011	+	971.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50147.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106172821-7	chr1	106172349	106173349	+	971.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133821, exon 1 of 17)	exon (NM_133821, exon 1 of 17)	980.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86585790-4	chr11	86585263	86586263	+	971.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 11 of 11)	intron (NM_001356531, intron 11 of 11)	-1605.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30987899-4	chr13	30987383	30988383	+	971.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13836.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-127836811-4	chr1	127836299	127837299	+	971.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011737, intron 2 of 9)	MLT1A0|LTR|ERVL-MaLR	3491.0	NM_011737	22625.0	Mm.246566	NM_011737	ENSMUSG00000051590	Map3k19	Ysk4	mitogen-activated protein kinase kinase kinase 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-75824796-4	chr13	75824314	75825314	+	971.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15071.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	34.0	34.5	33.5	22.5	32.5	18.5
Merged-chr11-97051341-2	chr11	97050841	97051841	+	971.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310509, intron 1 of 22)	intron (NM_001310509, intron 1 of 22)	521.0	NM_001081434	71240.0	Mm.190450	NM_001081434	ENSMUSG00000038534	Osbpl7	4933437E18Rik	oxysterol binding protein-like 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151958672-4	chr1	151958171	151959171	+	971.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 3 of 5)	L1M3|LINE|L1	131649.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70738384-4	chr17	70737891	70738891	+	971.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	108386.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.0	0.0	0.0	1.5	1.0	2.0
Merged-chr3-142470212-4	chr3	142469696	142470696	+	971.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26738.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43554522-3	chr1	43554030	43555030	+	971.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010879, exon 4 of 5)	exon (NM_010879, exon 4 of 5)	108779.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36320160-4	chr18	36319654	36320654	+	971.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	20053.0	NM_001267796	109169.0	Mm.426423	NM_001267796	ENSMUSG00000110185	Igip	6330403M23Rik	IgA inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77605487-4	chr10	77604985	77605985	+	971.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_125904)	promoter-TSS (NR_125904)	-612.0	NM_001301672	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-91271378-4	chr10	91270876	91271876	+	971.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50757.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6141592-4	chr19	6141091	6142091	+	971.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019722)	promoter-TSS (NM_019722)	-454.0	NM_019722	56327.0	Mm.21071	NM_019722	ENSMUSG00000024944	Arl2	2610009M23Rik|AI115441|AW553335	ADP-ribosylation factor-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-109230988-4	chr2	109230477	109231477	+	971.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029790, intron 2 of 5)	intron (NM_029790, intron 2 of 5)	47313.0	NM_029790	76894.0	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152597089-4	chr1	152596593	152597593	+	971.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	28124.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34072269-4	chr17	34071771	34072771	+	971.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-20108.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	22.0	59.5	49.0	1.0	18.0	7.0
Merged-chr16-10192948-4	chr16	10192445	10193445	+	971.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153123)	promoter-TSS (NM_153123)	39.0	NM_029253	75329.0	Mm.108729	NM_029253	ENSMUSG00000039200	Atf7ip2	4930558K11Rik|BC018510|Get-1|PSM2	activating transcription factor 7 interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-33120177-4	chr19	33119705	33120705	+	971.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36907.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120652151-5	chr2	120651690	120652690	+	971.3599849999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CGTG)n|Simple_repeat|Simple_repeat	42595.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	80.5	121.5	119.5	48.0	72.0	63.5
Merged-chr2-145881218-4	chr2	145880764	145881764	+	971.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 11 of 12)	intron (NM_028724, intron 11 of 12)	-21977.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	21.0	50.5	35.0	13.5	30.0	36.0
Merged-chr15-103260564-4	chr15	103259920	103260920	+	971.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2017.0	NM_001302341	18022.0	Mm.457989	NM_008685	ENSMUSG00000058794	Nfe2	NF-E2|NF-E2/P45|p45|p45NFE2|p45nf-e2	nuclear factor, erythroid derived 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10335201-5	chr17	10334683	10335683	+	971.338074	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10581.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86889662-2	chr12	86889162	86890162	+	971.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4848.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6384196-3	chr15	6383687	6384687	+	971.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	-2561.0	NM_023118	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-28516297-3	chr10	28515788	28516788	+	971.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359356, intron 13 of 30)	intron (NM_001359356, intron 13 of 30)	-152072.0	NM_001305663	210757.0	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51890521-4	chr11	51890031	51891031	+	971.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-32901.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160348285-4	chr2	160347783	160348783	+	971.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18782.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-22357640-3	chr10	22357132	22358132	+	971.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	ORR1D1|LTR|ERVL-MaLR	-4262.0	NM_020030	56554.0	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86179021-4	chr1	86178525	86179525	+	971.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027456, intron 9 of 20)	intron (NM_027456, intron 9 of 20)	24245.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104639044-3	chr3	104638555	104639555	+	971.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009196, intron 1 of 4)	CpG	391.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27116819-4	chr14	27116326	27117326	+	971.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27167.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.0	0.0	2.0	1.5	2.5	0.0
Merged-chr4-55350554-3	chr4	55350051	55351051	+	971.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009011, intron 1 of 9)	CpG	509.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	120.0	255.5	276.0	73.0	236.0	231.5
Merged-chr2-27717087-2	chr2	27716587	27717587	+	971.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	6504.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70370680-4	chr14	70370169	70371169	+	971.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19245.0	NM_001135151	213053.0	Mm.270647	NM_144808	ENSMUSG00000022094	Slc39a14	FAD-123|ZIP-14|Zip14|fad123	solute carrier family 39 (zinc transporter), member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105018997-4	chr3	105018500	105019500	+	971.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 3 of 5)	intron (NM_030249, intron 3 of 5)	33953.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130810314-4	chr4	130809816	130810816	+	971.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	17779.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142765980-4	chr3	142765472	142766472	+	971.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145546, intron 1 of 6)	intron (NM_145546, intron 1 of 6)	725.0	NM_145546	229906.0	Mm.271756	NM_145546	ENSMUSG00000028271	Gtf2b	-	general transcription factor IIB	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29494589-4	chr19	29494111	29495111	+	971.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	27376.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152696951-4	chr2	152696451	152697451	+	971.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010376, intron 10 of 11)	intron (NM_010376, intron 10 of 11)	9803.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	8.5	14.5	36.0	9.0	19.5	12.5
Merged-chr1-95644278-4	chr1	95643783	95644783	+	971.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159745, intron 3 of 3)	MIR3|SINE|MIR	23311.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-13037536-4	chr7	13037045	13038045	+	971.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243968)	promoter-TSS (NM_001243968)	82.0	NM_001243968	22192.0	Mm.196580	NM_145578	ENSMUSG00000005575	Ube2m	2510040H03Rik|UBC12|Ubc-rs2	ubiquitin-conjugating enzyme E2M	protein-coding	4.0	18.5	13.0	0.0	23.0	14.5
Merged-chr7-98341576-4	chr7	98341084	98342084	+	971.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19704.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-81432925-4	chr17	81432429	81433429	+	971.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 5 of 8)	intron (NR_104580, intron 5 of 8)	305458.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150624084-2	chr4	150623475	150624475	+	971.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28199.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	1.0	6.0	10.0	2.5	1.0	0.0
Merged-chr10-84534272-4	chr10	84533947	84534947	+	971.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175451)	promoter-TSS (NM_175451)	-559.0	NM_175451	216197.0	Mm.334999	NM_175451	ENSMUSG00000046841	Ckap4	5630400A09Rik|CLIMP-63|P63	cytoskeleton-associated protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-105751641-4	chr7	105751154	105752154	+	971.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009906, exon 3 of 13)	exon (NM_009906, exon 3 of 13)	581.0	NM_009906	12751.0	Mm.20837	NM_009906	ENSMUSG00000030894	Tpp1	Cln2|LPIC|TPP-1|TPP-I	tripeptidyl peptidase I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52221780-4	chr6	52221244	52222244	+	971.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3171.0	NM_010455	15404.0	Mm.294826	NM_010455	ENSMUSG00000038236	Hoxa7	AV118143|Hox-1.1|M6	homeobox A7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101678884-2	chr11	101678384	101679384	+	971.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13343.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19685507-2	chr7	19685007	19686007	+	971.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4047.0	NM_001309799	105886299.0	Mm.28394	NM_001309799	ENSMUSG00000109350	Gm44805	Apoc4-apoc2	predicted gene 44805	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-17977041-4	chr13	17976538	17977538	+	971.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16313.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-35689010-4	chr5	35688466	35689466	+	971.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-9186.0	NM_030127	78558.0	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127662986-2	chr10	127662486	127663486	+	971.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008668, intron 5 of 6)	intron (NM_008668, intron 5 of 6)	3717.0	NM_001122895	17937.0	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22437701-4	chr11	22437192	22438192	+	971.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74591.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36307247-4	chr1	36306756	36307756	+	971.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033310)	promoter-TSS (NR_033310)	-477.0	NM_001172206	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95963243-4	chr15	95962746	95963746	+	971.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 17 of 19)	MIRc|SINE|MIR	116307.0	NR_126493	402773.0	Mm.210567	NM_001033483	ENSMUSG00000078925	D030018L15Rik	-	nuclear receptor coactivator 2 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89210251-3	chr15	89209738	89210738	+	971.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1321.0	NM_026813	71474.0	Mm.184055	NM_026813	ENSMUSG00000036561	Ppp6r2	1110033O10Rik|8430411H09Rik|B230107H12Rik|Pp6r2|Saps2	protein phosphatase 6, regulatory subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-146959504-5	chr2	146959038	146960038	+	971.213318	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033298, intron 12 of 13)	intron (NM_001033298, intron 12 of 13)	-53461.0	NM_001356403	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	3.5	7.5	0.0	0.0	4.0	7.0
Merged-chr7-16951469-4	chr7	16950971	16951971	+	971.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6789.0	NM_001099636	434128.0	Mm.483018	NM_001099636	ENSMUSG00000070802	Pnmal2	EG434128	PNMA-like 2	protein-coding	0.0	1.5	0.5	0.0	1.5	0.5
Merged-chr7-88230938-4	chr7	88230459	88231459	+	971.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCc|LINE|L1	-47126.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	31.0	65.5	56.5	44.0	77.5	62.5
Merged-chr11-97309534-4	chr11	97309022	97310022	+	971.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6194.0	NM_025927	67036.0	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	4.0	1.0	1.0	2.0	10.5	9.0
Merged-chr19-24281841-4	chr19	24281345	24282345	+	971.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1259.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	2.5	14.0	15.0	2.0	1.5	2.5
Merged-chr19-46478950-4	chr19	46478447	46479447	+	971.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 10 of 11)	intron (NM_001025391, intron 10 of 11)	-22701.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	15.5	19.0	15.5	4.5	1.5	15.0
Merged-chr14-69805486-5	chr14	69805004	69806004	+	971.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153514)	promoter-TSS (NM_153514)	41.0	NM_153514	246710.0	Mm.102367	NM_153514	ENSMUSG00000022075	Rhobtb2	Dbc2|E130206H14Rik|mKIAA0717	Rho-related BTB domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114526446-4	chr7	114525950	114526950	+	971.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011055, intron 11 of 15)	Lx7|LINE|L1	36522.0	NR_110407	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	11.0	16.5	15.5	4.0	9.0	4.0
Merged-chr12-111592646-4	chr12	111592130	111593130	+	971.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_022801, exon 2 of 16)	exon (NM_022801, exon 2 of 16)	18120.0	NM_022801	17169.0	Mm.260504	NM_021516	ENSMUSG00000007411	Mark3	1600015G02Rik|A430080F22Rik|C-TAK1|ETK-1|ETK1|Emk2|MPK10	MAP/microtubule affinity regulating kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103683082-4	chr2	103682589	103683589	+	971.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 2 of 16)	intron (NM_178890, intron 2 of 16)	78181.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	3.0	21.5	9.5	4.5	19.0	8.0
Merged-chr18-68220453-4	chr18	68219942	68220942	+	971.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	L1M4b|LINE|L1	-7504.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88604891-2	chr3	88604391	88605391	+	971.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-11316.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	3.5	6.5	0.5	11.0	5.0	2.0
Merged-chr11-21549361-2	chr11	21548861	21549861	+	971.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	22573.0	NM_008618	17449.0	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	0.0	2.0	0.0	0.0	6.0	0.5
Merged-chr19-8833113-2	chr19	8832613	8833613	+	971.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081196, exon 14 of 14)	3' UTR (NM_001081196, exon 14 of 14)	-4354.0	NM_001136064	14705.0	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-56224701-2	chr4	56224201	56225201	+	971.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	516724.0	NM_025271	11471.0	Mm.251434	NM_025271	ENSMUSG00000070980	Actl7b	Gm26657|Tact1	actin-like 7b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65490636-4	chr18	65490233	65491233	+	971.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	59736.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	3.0	6.5	0.5	14.0	17.0	27.5
Merged-chr6-112778384-4	chr6	112777906	112778906	+	971.1416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080448, intron 5 of 21)	MIR3|SINE|MIR	-81736.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-106681128-4	chr5	106680627	106681627	+	971.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026856, intron 1 of 6)	intron (NM_026856, intron 1 of 6)	15703.0	NM_026856	52397.0	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	1.5	0.0	0.0	0.5	0.0	5.5
Merged-chr6-113642956-4	chr6	113642490	113643490	+	971.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 1 of 11)	intron (NM_001113553, intron 1 of 11)	4523.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59551230-4	chr9	59550712	59551712	+	971.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	11672.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62324046-4	chr10	62323525	62324525	+	971.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010438, intron 4 of 21)	Lx5b|LINE|L1	16396.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108444174-4	chr3	108443669	108444669	+	971.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011319, intron 1 of 11)	intron (NM_011319, intron 1 of 11)	1090.0	NM_011319	20226.0	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156264171-4	chr1	156263668	156264668	+	971.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134741, intron 14 of 17)	ORR1F|LTR|ERVL-MaLR	39180.0	NM_001134741	214575.0	Mm.252800	NM_001134741	ENSMUSG00000060985	Tdrd5	Gm103	tudor domain containing 5	protein-coding	3.0	2.5	2.5	11.0	3.0	6.5
Merged-chr2-70091349-4	chr2	70090852	70091852	+	971.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177376, intron 2 of 34)	MLT1B|LTR|ERVL-MaLR	52226.0	NM_177376	329421.0	Mm.99648	NM_177376	ENSMUSG00000042064	Myo3b	A430065P19Rik	myosin IIIB	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70376350-4	chr11	70375849	70376849	+	971.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEf|LINE|L1	-24318.0	NM_009660	11687.0	Mm.4584	NM_009660	ENSMUSG00000018924	Alox15	12-LO|12/15-LO|15-LOX|Alox12l|L-12LO	arachidonate 15-lipoxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-73321283-3	chr11	73320783	73321783	+	971.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023113, intron 2 of 5)	RLTR45|LTR|ERVK	3354.0	NM_023113	11484.0	Mm.293574	NM_023113	ENSMUSG00000020774	Aspa	Acy-2|Acy2|nur7	aspartoacylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31224659-3	chr6	31224155	31225155	+	971.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040260, intron 1 of 5)	L2c|LINE|L2	4304.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96263839-3	chr10	96263335	96264335	+	971.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37628.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117505351-4	chr5	117504870	117505870	+	971.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 2 of 19)	intron (NM_001312914, intron 2 of 19)	91368.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91444670-4	chr2	91444171	91445171	+	971.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311144)	promoter-TSS (NM_001311144)	43.0	NM_001311144	228356.0	Mm.386861	NM_175123	ENSMUSG00000040591	1110051M20Rik	AI586322	RIKEN cDNA 1110051M20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45790774-4	chr19	45790278	45791278	+	971.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7225.0	NM_023799	76055.0	Mm.122725	NM_023799	ENSMUSG00000025220	Mgea5	Hy5|Ncoat|OGA	meningioma expressed antigen 5 (hyaluronidase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19301773-9	chr7	19301267	19302267	+	971.050903	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008036)	TTS (NM_008036)	8278.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118050491-4	chr10	118049988	118050988	+	971.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91299.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	17.0	44.5	49.0	18.0	36.5	23.0
Merged-chr17-80180203-4	chr17	80179714	80180714	+	971.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176963, intron 4 of 6)	intron (NM_176963, intron 4 of 6)	27091.0	NM_001195486	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148956269-4	chr5	148955784	148956784	+	971.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6034.0	NR_040686	71473.0	Mm.90306	NR_040686	ENSMUSG00000079069	8430423G03Rik	-	RIKEN cDNA 8430423G03 gene	ncRNA	14.5	8.0	8.0	4.5	13.5	13.5
Merged-chr5-150895998-2	chr5	150895498	150896498	+	971.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-56609.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34910486-2	chr7	34909986	34910986	+	971.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1921.0	NM_008820	18624.0	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45314170-4	chr9	45313675	45314675	+	971.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4925.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	3.0	19.0	8.0	0.5	0.0	5.0
Merged-chr15-53344687-3	chr15	53344223	53345223	+	971.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010162, exon 1 of 11)	exon (NM_010162, exon 1 of 11)	1460.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58542035-3	chr9	58541545	58542545	+	971.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1105.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109105399-2	chr4	109104899	109105899	+	971.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133885, intron 4 of 22)	intron (NM_133885, intron 4 of 22)	12637.0	NM_173350	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	1.5	9.5	8.0	1.0	5.0	5.0
Merged-chr9-85361238-2	chr9	85360738	85361738	+	971.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34088.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88082867-4	chr3	88082377	88083377	+	971.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033484, intron 1 of 37)	intron (NM_001033484, intron 1 of 37)	826.0	NM_001033484	404710.0	Mm.331133	NM_001033484	ENSMUSG00000028068	Iqgap3	AI593484|D030034H08	IQ motif containing GTPase activating protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63141150-2	chr14	63140650	63141650	+	971.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 8 of 9)	ORR1C2|LTR|ERVL-MaLR	18688.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3345254-3	chr12	3344774	3345774	+	971.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-19858.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154436763-4	chr2	154436248	154437248	+	971.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172860, intron 1 of 10)	CpG	264.0	NM_009823	12396.0	Mm.29914	NM_009823	ENSMUSG00000038533	Cbfa2t2	A430091M07|C330013D05Rik|Cbfa2t2h|MTGR1	core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72536844-2	chr6	72536344	72537344	+	971.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-7547.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152325145-2	chr4	152324645	152325645	+	971.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102292)	promoter-TSS (NR_102292)	-581.0	NM_001277114	19934.0	Mm.307846	NM_009079	ENSMUSG00000028936	Rpl22	2700038K18Rik	ribosomal protein L22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53095487-2	chr4	53094987	53095987	+	971.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 8 of 49)	intron (NM_013454, intron 8 of 49)	64408.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64249962-2	chr7	64249462	64250462	+	971.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105844)	TTS (NR_105844)	137.0	NR_105844	102465226.0		NR_105844	ENSMUSG00000098910	Mir6416	Gm27746|mmu-mir-6416	microRNA 6416	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123860084-3	chr8	123859624	123860624	+	971.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028536)	promoter-TSS (NM_028536)	85.0	NM_028536	73420.0	Mm.157746	NM_028536	ENSMUSG00000031971	Ccsap	1700054N08Rik|AI853424	centriole, cilia and spindle associated protein	protein-coding	30.0	45.0	33.5	28.5	60.0	48.5
Merged-chr10-80146237-2	chr10	80145737	80146737	+	971.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025313)	TTS (NM_025313)	-2035.0	NM_001305798	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40220126-2	chr12	40219626	40220626	+	971.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013562, intron 1 of 11)	intron (NM_013562, intron 1 of 11)	2685.0	NR_035459	100316693.0		NR_035459	ENSMUSG00000089371	Mir1938	mir-1938|mmu-mir-1938	microRNA 1938	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101235975-2	chr15	101235475	101236475	+	971.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10789.0	NR_045328	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25408994-2	chr10	25408494	25409494	+	971.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013511, intron 1 of 19)	intron (NM_013511, intron 1 of 19)	626.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0.0	5.0	2.5	0.0	5.5	1.0
Merged-chr8-119841614-2	chr8	119841114	119842114	+	971.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1035.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115064897-2	chr11	115064397	115065397	+	971.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-2858.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6415070-2	chr11	6414570	6415570	+	971.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008907)	promoter-TSS (NM_008907)	-800.0	NM_008907	268373.0	Mm.5246	NM_008907	ENSMUSG00000071866	Ppia	2700098C05|Cphn|CyP-18|CypA	peptidylprolyl isomerase A	protein-coding	2.0	2.0	0.5	0.0	6.0	0.0
Merged-chr1-170510390-2	chr1	170509890	170510890	+	971.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 2 of 9)	intron (NM_001109985, intron 2 of 9)	46720.0	NM_027528	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95795930-2	chr15	95795430	95796430	+	971.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	5087.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-113742675-2	chr9	113742175	113743175	+	971.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114347, intron 1 of 39)	intron (NM_001114347, intron 1 of 39)	1202.0	NM_001114347	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64141026-4	chr7	64140509	64141509	+	971.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12826.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30605515-2	chr2	30605015	30606015	+	971.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030137, intron 1 of 1)	intron (NM_030137, intron 1 of 1)	10471.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-143992752-4	chr1	143992360	143993360	+	971.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	11289.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64002129-4	chr15	64001627	64002627	+	970.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144846, intron 1 of 11)	intron (NM_144846, intron 1 of 11)	-4061.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-46846418-4	chr7	46845924	46846924	+	970.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136069)	promoter-TSS (NM_001136069)	620.0	NR_102727	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25993544-4	chr15	25993034	25994034	+	970.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144523, intron 4 of 5)	intron (NM_144523, intron 4 of 5)	9168.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72394564-4	chr6	72394040	72395040	+	970.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3873.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-35705734-4	chr15	35705253	35706253	+	970.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177151, intron 33 of 61)	intron (NM_177151, intron 33 of 61)	-44706.0	NR_030606	100124469.0		NR_030606	ENSMUSG00000077890	Mir875	Mirn875|mir-875|mmu-mir-875	microRNA 875	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-28414209-3	chr10	28413720	28414720	+	970.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359356, intron 7 of 30)	intron (NM_001359356, intron 7 of 30)	-254140.0	NM_001305663	210757.0	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-40714070-3	chr11	40713570	40714570	+	970.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013552, exon 11 of 18)	exon (NM_013552, exon 11 of 18)	-18867.0	NM_001199274	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	5.0	0.0	0.0	2.0	1.0	1.0
Merged-chr2-165914493-4	chr2	165914012	165915012	+	970.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29674.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	1.0	14.0	4.0	3.0	2.0	4.5
Merged-chr1-64956746-4	chr1	64956219	64957219	+	970.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001039493, exon 1 of 8)	5' UTR (NM_001039493, exon 1 of 8)	105.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95694040-4	chr3	95693558	95694558	+	970.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6141.0	NM_001301705	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	5.5	8.5	8.0	2.0	8.5	2.0
Merged-chr1-191166449-4	chr1	191165957	191166957	+	970.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-1640.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126537487-4	chr8	126536986	126537986	+	970.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55950.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152428473-4	chr1	152427955	152428955	+	970.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177756, intron 1 of 11)	intron (NM_177756, intron 1 of 11)	28588.0	NM_177756	269132.0	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-38114626-4	chr3	38114110	38115110	+	970.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93509.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165285802-4	chr2	165285316	165286316	+	970.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252575, intron 1 of 9)	intron (NM_001252575, intron 1 of 9)	1971.0	NM_001252574	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155049190-4	chr1	155048702	155049702	+	970.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34062.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-114964384-4	chr13	114963844	114964844	+	970.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033228, intron 28 of 28)	intron (NM_001033228, intron 28 of 28)	-32244.0	NM_008396	16398.0	Mm.5007	NM_008396	ENSMUSG00000015533	Itga2	CD49B|DX5|GPIa	integrin alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-108627218-4	chr5	108626727	108627727	+	970.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359923, intron 1 of 22)	intron (NM_001359923, intron 1 of 22)	2550.0	NM_001359924	231580.0	Mm.276647	NM_153569	ENSMUSG00000062234	Gak	D130045N16Rik	cyclin G associated kinase	protein-coding	4.0	22.0	9.0	5.0	5.5	2.0
Merged-chr4-136898027-5	chr4	136897623	136898623	+	970.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007572, intron 1 of 2)	(CCCTAA)n|Simple_repeat|Simple_repeat	721.0	NM_007572	12259.0	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	152.0	437.0	342.5	190.5	457.0	333.0
Merged-chr4-11579253-4	chr4	11578750	11579750	+	970.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256142)	promoter-TSS (NM_001256142)	-412.0	NM_001256142	100503583.0	Mm.249437	NM_001256142	ENSMUSG00000094595	Fsbp	-	fibrinogen silencer binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-145743227-3	chr3	145742728	145743728	+	970.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15464.0	NM_026993	69219.0	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25248484-6	chr7	25247981	25248981	+	970.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010155, intron 1 of 3)	intron (NM_010155, intron 1 of 3)	2277.0	NM_010155	13875.0	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-44313827-3	chr2	44313313	44314313	+	970.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 12 of 14)	intron (NM_001301831, intron 12 of 14)	-248489.0	NR_040622	320872.0	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-111176729-3	chr5	111176207	111177207	+	970.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	-153990.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	0.5	1.5	2.0	36.5	21.5	26.5
Merged-chr11-115279929-3	chr11	115279413	115280413	+	970.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-2944.0	NM_007997	14149.0	Mm.4719	NM_007997	ENSMUSG00000018861	Fdxr	AR	ferredoxin reductase	protein-coding	28.0	23.0	39.0	6.5	5.5	6.5
Merged-chr6-128201545-3	chr6	128201041	128202041	+	970.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17738.0	NR_077223	330427.0	Mm.426356	NR_077223	ENSMUSG00000107879	9330102E08Rik	-	RIKEN cDNA 9330102E08 gene	ncRNA	1.5	14.0	6.0	45.0	106.0	49.0
Merged-chr3-101806343-4	chr3	101805852	101806852	+	970.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29871.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29500547-4	chr19	29500049	29501049	+	970.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21438.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122600933-4	chr6	122600411	122601411	+	970.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134391, intron 1 of 7)	intron (NM_001134391, intron 1 of 7)	1533.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	162.5	368.0	240.5	81.0	267.5	145.5
Merged-chr16-24578649-4	chr16	24578152	24579152	+	970.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 4 of 12)	intron (NM_178665, intron 4 of 12)	49338.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-100439292-4	chr3	100438803	100439803	+	970.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12898.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-62558389-4	chr17	62557897	62558897	+	970.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	322920.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122409166-4	chr2	122408664	122409664	+	970.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31656.0	NM_172980	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	107.5	216.5	152.5	93.5	219.0	145.5
Merged-chr13-101656018-4	chr13	101655519	101656519	+	970.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	36611.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128097904-4	chr10	128097363	128098363	+	970.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054078, intron 2 of 29)	intron (NM_054078, intron 2 of 29)	5080.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-146402942-2	chr2	146402452	146403452	+	970.833374	f0_balb.idr|f1_balb.idr	intron (NM_001033348, intron 21 of 40)	intron (NM_001033348, intron 21 of 40)	109052.0	NM_001033348	241694.0	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding	0.0	3.0	2.5	5.0	12.5	7.5
Merged-chr9-56266688-4	chr9	56266186	56267186	+	970.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172924, intron 3 of 6)	intron (NM_172924, intron 3 of 6)	-105616.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16142668-4	chr19	16142175	16143175	+	970.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	9844.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-16216440-1	chr12	16215940	16216940	+	970.8333130000001	f0_balb.idr	Intergenic	Intergenic	373330.0	NM_015763	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	0.0	2.5	5.0	5.5	26.5	27.0
Merged-chr6-127330404-4	chr6	127329912	127330912	+	970.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22445.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0.0	1.5	2.5	0.0	0.0	0.0
Merged-chr13-83064937-4	chr13	83064434	83065434	+	970.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-366601.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	2.0	4.0	2.0	1.0	2.0	4.5
Merged-chr16-10950730-4	chr16	10950233	10951233	+	970.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35936.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156278857-3	chr2	156278354	156279354	+	970.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172674, intron 9 of 17)	intron (NM_172674, intron 9 of 17)	-33619.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	3.5	4.0	0.5	3.5	2.5	6.0
Merged-chr4-74357740-4	chr4	74357240	74358240	+	970.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356561, intron 15 of 20)	intron (NM_001356561, intron 15 of 20)	105861.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17520852-4	chr6	17520360	17521360	+	970.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008591, intron 4 of 21)	intron (NM_008591, intron 4 of 21)	56903.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	0.0	8.5	3.5	11.0	29.0	13.5
Merged-chr17-6107500-4	chr17	6106957	6107957	+	970.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001103181, intron 1 of 13)	intron (NM_001103181, intron 1 of 13)	627.0	NM_001103181	68842.0	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	0.0	8.5	9.0	1.5	0.0	20.0
Merged-chr18-5162198-4	chr18	5161724	5162724	+	970.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_153824)	TTS (NR_153824)	3507.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64274817-7	chr13	64274303	64275303	+	970.789124	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172587, exon 1 of 14)	5' UTR (NM_172587, exon 1 of 14)	185.0	NM_172587	218294.0	Mm.25335	NM_172587	ENSMUSG00000033102	Cdc14b	2810432N10Rik|A530086E13Rik|AA472821|CDC14B3|Cdc14B1	CDC14 cell division cycle 14B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4848828-7	chr11	4848358	4849358	+	970.785706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010898, intron 1 of 15)	CpG	686.0	NM_001252250	18016.0	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	50.0	143.5	98.0	38.5	92.5	78.0
Merged-chr7-122127962-3	chr7	122127429	122128429	+	970.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001289842, exon 4 of 12)	exon (NM_001289842, exon 4 of 12)	5017.0	NM_001289844	233826.0	Mm.38348	NM_172744	ENSMUSG00000044702	Palb2	BC066140	partner and localizer of BRCA2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106332930-3	chr9	106332431	106333431	+	970.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 10 of 10)	intron (NM_027354, intron 10 of 10)	-35701.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	25.5	41.0	20.5	7.0	6.0	6.5
Merged-chr7-100502748-3	chr7	100502236	100503236	+	970.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153527)	TTS (NM_153527)	9378.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	11.5	22.0	14.0	9.5	10.0	9.5
Merged-chr13-102849278-3	chr13	102848771	102849771	+	970.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 5 of 28)	MLT1E3|LTR|ERVL-MaLR	89016.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108895814-4	chr3	108895322	108896322	+	970.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5814.0	NM_001165965	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	0.0	3.0	5.0	0.5	5.5	3.5
Merged-chr17-49423057-4	chr17	49422554	49423554	+	970.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5310.0	NM_028464	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	3.5	10.0	14.5	6.0	12.5	15.5
Merged-chr11-3168544-2	chr11	3168033	3169033	+	970.75	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 7 of 32)	(TG)n|Simple_repeat|Simple_repeat	24930.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145271203-1	chr7	145270703	145271703	+	970.75	f1_c57bl6.idr	intron (NR_132643, intron 7 of 22)	intron (NR_132643, intron 7 of 22)	12808.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	4.5	7.5	12.5	7.5	6.5	6.5
Merged-chr18-4258333-4	chr18	4257789	4258789	+	970.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	92457.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-137115519-3	chr2	137115038	137116038	+	970.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013822, exon 2 of 26)	exon (NM_013822, exon 2 of 26)	982.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-9186636-4	chr5	9186114	9187114	+	970.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24838.0	NR_152861	23857.0	Mm.22480	NM_011806	ENSMUSG00000042508	Dmtf1	Dimp|Dmp1	cyclin D binding myb-like transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31044331-2	chr3	31043831	31044831	+	970.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008857, intron 14 of 17)	intron (NM_008857, intron 14 of 17)	5365.0	NR_105975	102465610.0		NR_105975	ENSMUSG00000098890	Mir7008	Gm27752|mmu-mir-7008	microRNA 7008	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-57657061-4	chr18	57656569	57657569	+	970.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311063, intron 5 of 5)	MTD|LTR|ERVL-MaLR	-18484.0	NR_045360	70157.0	Mm.490532	NR_045360		2210409D07Rik	-	RIKEN cDNA 2210409D07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52756402-4	chr3	52755883	52756883	+	970.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038079, intron 1 of 3)	intron (NR_038079, intron 1 of 3)	16659.0	NR_038079	329639.0	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	28.0	27.5	16.5	11.0	13.0	6.0
Merged-chr6-124279610-3	chr6	124279103	124280103	+	970.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25048.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-112217370-3	chr7	112216847	112217847	+	970.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-8489.0	NM_177282	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	4.5	0.0	1.5	6.0	0.0	3.0
Merged-chr8-120324804-4	chr8	120324340	120325340	+	970.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96610.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-91402907-3	chr5	91402412	91403412	+	970.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007568)	promoter-TSS (NM_007568)	82.0	NM_007568	12223.0	Mm.2024	NM_007568	ENSMUSG00000082361	Btc	Bcn	betacellulin, epidermal growth factor family member	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23719585-3	chr17	23719023	23720023	+	970.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6813.0	NM_023058	268930.0	Mm.182193	NM_023058	ENSMUSG00000023908	Pkmyt1	6230424P17|AW209059|Myt1	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	2.5	7.5	11.0	10.5	35.0	14.5
Merged-chr18-37655729-4	chr18	37655229	37656229	+	970.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301259, intron 1 of 3)	intron (NM_001301259, intron 1 of 3)	-6216.0	NM_033584	93709.0	Mm.247203	NM_033584	ENSMUSG00000103144	Pcdhga1	-	protocadherin gamma subfamily A, 1	protein-coding	2.5	5.5	6.0	2.5	5.5	6.0
Merged-chr10-19088599-4	chr10	19088083	19089083	+	970.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53166.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.0	6.0	7.5	6.0	4.0	4.0
Merged-chr4-119119017-4	chr4	119118526	119119526	+	970.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011400, intron 1 of 9)	intron (NM_011400, intron 1 of 9)	10281.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117731410-4	chr10	117730948	117731948	+	970.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	14910.0	NM_029875	215436.0	Mm.256753	NM_029875	ENSMUSG00000060181	Slc35e3	9330166G04Rik|AI481200	solute carrier family 35, member E3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29168144-4	chr19	29167659	29168659	+	970.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32880.0	NR_029778	724062.0		NR_029778	ENSMUSG00000065556	Mir101b	Mirn101b|mir-101b	microRNA 101b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99240754-4	chr5	99240274	99241274	+	970.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145839, intron 4 of 13)	intron (NM_145839, intron 4 of 13)	12153.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47621203-4	chr6	47620697	47621697	+	970.69165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26167.0	NM_007971	14056.0	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	0.0	1.0	0.0	0.0	2.5	2.0
Merged-chr14-16427796-4	chr14	16427272	16428272	+	970.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009409, intron 33 of 35)	intron (NM_009409, intron 33 of 35)	62566.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81338780-3	chr10	81338284	81339284	+	970.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148951, intron 4 of 5)	RSINE1|SINE|B4	4482.0	NM_148951	209047.0	Mm.218755	NM_148951	ENSMUSG00000034872	Gipc3	Ahl5|Rgs19ip3	GIPC PDZ domain containing family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9491286-4	chr18	9490841	9491841	+	970.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41187.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	2.5	2.0	4.5	9.0	17.0	6.5
Merged-chr16-93808093-2	chr16	93807593	93808593	+	970.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357118, intron 34 of 35)	intron (NM_001357118, intron 34 of 35)	-13192.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21377066-4	chr19	21376560	21377560	+	970.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95601.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	0.0	2.0	3.5	5.0	10.5	1.5
Merged-chr17-28251773-3	chr17	28251286	28252286	+	970.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 2 of 7)	intron (NM_011145, intron 2 of 7)	19032.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4230832-2	chr12	4230332	4231332	+	970.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361641, intron 2 of 5)	intron (NM_001361641, intron 2 of 5)	3133.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-53437436-4	chr5	53436918	53437918	+	970.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118361.0	NM_001080928	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87256450-3	chr17	87255952	87256952	+	970.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176808, intron 4 of 4)	intron (NM_176808, intron 4 of 4)	9495.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	88.5	82.0	121.5	183.0	173.0	177.5
Merged-chr2-129381271-3	chr2	129380762	129381762	+	970.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-10123.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	139.5	335.5	158.5	132.5	316.0	156.0
Merged-chr6-30301039-3	chr6	30300534	30301534	+	970.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009459, intron 1 of 6)	intron (NM_009459, intron 1 of 6)	3505.0	NM_009459	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32249932-4	chr19	32249364	32250364	+	970.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 3 of 9)	intron (NM_144792, intron 3 of 9)	-38851.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55951734-4	chr16	55951291	55952291	+	970.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14484.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59749719-4	chr9	59749177	59750177	+	970.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172069, intron 1 of 2)	intron (NM_001172069, intron 1 of 2)	972.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101379856-4	chr7	101379281	101380281	+	970.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040112, intron 1 of 30)	intron (NM_001040112, intron 1 of 30)	1659.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	13.5	45.0	26.5	24.5	51.5	46.5
Merged-chr10-60835070-4	chr10	60834531	60835531	+	970.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3450.0	NM_001359273	107449.0	Mm.290433	NM_029770	ENSMUSG00000020099	Unc5b	6330415E02Rik|A630020F16|D10Bwg0792e|Unc5h2	unc-5 netrin receptor B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88371948-2	chr10	88371448	88372448	+	970.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7464.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30600150-4	chr7	30599632	30600632	+	970.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1223.0	NR_153655	58206.0	Mm.116789	NM_021397	ENSMUSG00000006310	Zbtb32	4930524C15Rik|FAXF|FAZF|PLZP|Rog|Tzfp	zinc finger and BTB domain containing 32	protein-coding	5.0	4.0	4.5	4.0	4.5	1.0
Merged-chr9-66213777-4	chr9	66213267	66214267	+	970.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010019, intron 2 of 11)	intron (NM_010019, intron 2 of 11)	55541.0	NM_010019	13143.0	Mm.304472	NM_010019	ENSMUSG00000032380	Dapk2	-	death-associated protein kinase 2	protein-coding	3.0	7.5	1.0	5.0	8.0	2.5
Merged-chr1-185238639-4	chr1	185238101	185239101	+	970.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163754, intron 7 of 34)	intron (NM_001163754, intron 7 of 34)	-4325.0	NR_034044	100217449.0	Mm.429560	NR_034044	ENSMUSG00000077571	Snora36b	MBI-87	small nucleolar RNA, H/ACA box 36B	snoRNA	13.0	30.0	20.0	12.5	15.0	27.5
Merged-chr15-27671818-4	chr15	27671334	27672334	+	970.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	9708.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50661673-4	chr9	50661164	50662164	+	970.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1884.0	NM_145614	235339.0	Mm.285076	NM_145614	ENSMUSG00000000168	Dlat	6332404G05Rik|DLTA|PDC-E2	dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	protein-coding	0.0	11.0	4.0	2.0	6.0	6.0
Merged-chr10-41587367-5	chr10	41586822	41587822	+	970.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 32 of 47)	intron (NM_001358562, intron 32 of 47)	19306.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88656182-4	chr8	88655702	88656702	+	970.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 2 of 12)	intron (NM_145857, intron 2 of 12)	8855.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	0.5	3.0	8.0	4.0	3.0	8.5
Merged-chr11-99230496-5	chr11	99230029	99231029	+	970.5904539999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_020618, exon 1 of 11)	5' UTR (NM_020618, exon 1 of 11)	488.0	NM_020618	57376.0	Mm.379086	NM_020618	ENSMUSG00000037935	Smarce1	2810417B20Rik|5830412H02Rik|9030408N19Rik|Baf27	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-42244680-4	chr13	42244235	42245235	+	970.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56741.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73567202-4	chr2	73566703	73567703	+	970.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007389, intron 7 of 8)	intron (NM_007389, intron 7 of 8)	13135.0	NM_007389	11435.0	Mm.4583	NM_007389	ENSMUSG00000027107	Chrna1	AI385656|AI608266|Achr-1|Acra	cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86963326-2	chr11	86962826	86963826	+	970.5833130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005341, intron 2 of 4)	intron (NM_001005341, intron 2 of 4)	30436.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129823456-4	chr4	129822971	129823971	+	970.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	2763.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	29.0	57.0	27.5	29.5	81.0	49.5
Merged-chr12-31921227-4	chr12	31920703	31921703	+	970.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163126, intron 21 of 22)	intron (NM_001163126, intron 21 of 22)	29042.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	3.0	4.5	6.0	0.0	4.0	4.0
Merged-chr10-82666633-4	chr10	82666149	82667149	+	970.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029102, intron 3 of 9)	L2c|LINE|L2	24001.0	NM_029102	74782.0	Mm.191281	NM_029102	ENSMUSG00000020251	Glt8d2	1110021D20Rik	glycosyltransferase 8 domain containing 2	protein-coding	0.0	6.0	2.0	0.0	1.5	1.5
Merged-chr17-47923717-4	chr17	47923222	47924222	+	970.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028767, intron 1 of 16)	CpG	910.0	NM_028767	74123.0	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	10.0	6.0	6.5	10.0	6.0	6.5
Merged-chr1-34467719-4	chr1	34467184	34468184	+	970.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011206, intron 5 of 14)	C-rich|Low_complexity|Low_complexity	7938.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75463044-4	chr11	75462520	75463520	+	970.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029739)	promoter-TSS (NR_029739)	-696.0	NR_029739	387141.0		NR_029739	ENSMUSG00000065529	Mir22	Mirn22|mmu-mir-22	microRNA 22	ncRNA	10.5	12.5	11.5	6.5	4.5	20.0
Merged-chr2-11288622-4	chr2	11288125	11289125	+	970.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 15 of 17)	intron (NM_008859, intron 15 of 17)	-50864.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-16554565-4	chr16	16554061	16555061	+	970.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	5658.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36751842-4	chr5	36751324	36752324	+	970.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3145.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65364366-3	chr9	65363865	65364865	+	970.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111145, intron 1 of 6)	intron (NM_001111145, intron 1 of 6)	3305.0	NM_001111145	208080.0	Mm.291862	NM_001111145	ENSMUSG00000086228	Ubap1l	Gm514	ubiquitin-associated protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63560268-4	chr4	63559814	63560814	+	970.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144905)	promoter-TSS (NM_144905)	87.0	NM_144905	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-19416647-6	chr14	19416159	19417159	+	970.507935	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	185928.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94604482-2	chr10	94603982	94604982	+	970.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR78|LTR|ERV1	-18283.0	NR_106070	102466817.0		NR_106070	ENSMUSG00000098544	Mir7211	Gm27536|mmu-mir-7211	microRNA 7211	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82126825-4	chr15	82126350	82127350	+	970.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310435)	TTS (NM_001310435)	-1072.0	NM_172428	76457.0	Mm.440373	NM_172428	ENSMUSG00000068114	Ccdc134	2310042L06Rik|AW208859	coiled-coil domain containing 134	protein-coding	97.0	180.5	91.0	58.5	136.0	78.0
Merged-chr9-83599646-4	chr9	83599140	83600140	+	970.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172507, exon 4 of 4)	3' UTR (NM_172507, exon 4 of 4)	51302.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	15.5	16.5	11.5	10.0	17.0	9.5
Merged-chr10-81435126-2	chr10	81434626	81435626	+	970.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7953.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152799608-2	chr1	152799108	152800108	+	970.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010877)	promoter-TSS (NM_010877)	-545.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103375901-2	chr15	103375401	103376401	+	970.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9110.0	NM_001314041	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-114907852-2	chr4	114907352	114908352	+	970.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008593, exon 1 of 1)	exon (NM_008593, exon 1 of 1)	1046.0	NM_008593	17301.0	Mm.7997	NM_008593	ENSMUSG00000055210	Foxd2	AI426778|Mf2	forkhead box D2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164874645-2	chr2	164874135	164875135	+	970.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4733.0	NM_146129	228866.0	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	11.0	10.0	4.0	0.0	2.5	3.5
Merged-chr12-76521436-2	chr12	76520936	76521936	+	970.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	11776.0	NR_039597	100628604.0		NR_039597	ENSMUSG00000092738	Mir5135	mir-5135|mmu-mir-5135|mu-mir-5135	microRNA 5135	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60175939-2	chr11	60175439	60176439	+	970.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037764, intron 1 of 4)	CpG	24678.0	NR_105886	102465555.0		NR_105886	ENSMUSG00000098547	Mir6921	Gm27352|mmu-mir-6921	microRNA 6921	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112084641-4	chr13	112084150	112085150	+	970.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-203801.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0.0	0.0	4.0	8.5	0.0	0.0
Merged-chr8-88273302-2	chr8	88272802	88273802	+	970.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007406, intron 1 of 27)	intron (NM_007406, intron 1 of 27)	899.0	NM_007406	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	2.5	0.0	6.0	2.5	0.0	2.0
Merged-chr10-68098313-1	chr10	68097813	68098813	+	970.5	f1_balb.idr	exon (NM_023598, exon 10 of 10)	exon (NM_023598, exon 10 of 10)	118743.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	0.0	0.5	1.0	0.0	0.0	1.5
Merged-chr7-45562867-2	chr7	45562367	45563367	+	970.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025330, intron 5 of 8)	intron (NM_025330, intron 5 of 8)	-7286.0	NM_009737	12036.0	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat(m)|Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44858893-4	chr10	44858388	44859388	+	970.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-208326.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90749850-4	chr2	90749365	90750365	+	970.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018828, intron 2 of 16)	ORR1B1|LTR|ERVL-MaLR	4495.0	NM_018828	55935.0	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-69158011-2	chr17	69157511	69158511	+	970.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013813, intron 1 of 21)	intron (NM_013813, intron 1 of 21)	1267.0	NM_013813	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92181867-2	chr1	92181367	92182367	+	970.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1526.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0.0	1.0	3.5	3.5	3.0	8.5
Merged-chr11-85141363-2	chr11	85140863	85141863	+	970.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1408.0	NM_001029934	237898.0	Mm.178524	NM_001029934	ENSMUSG00000000804	Usp32	2900074J03Rik|6430526O11Rik|AW045245	ubiquitin specific peptidase 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-116958192-2	chr13	116957692	116958692	+	970.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	67324.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9484669-4	chr18	9484169	9485169	+	970.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-34515.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	4.0	13.0	3.5	4.0	24.5	7.5
Merged-chr15-103309866-2	chr15	103309366	103310366	+	970.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030720, intron 1 of 1)	intron (NM_030720, intron 1 of 1)	572.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118900582-3	chr14	118900088	118901088	+	970.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360411, intron 11 of 21)	intron (NM_001360411, intron 11 of 21)	22203.0	NM_001360413	66573.0	Mm.87456	NM_025943	ENSMUSG00000042156	Dzip1	2510025K24Rik|2810422M04Rik	DAZ interacting protein 1	protein-coding	0.0	4.5	1.0	0.0	0.5	0.0
Merged-chr10-7834511-4	chr10	7833997	7834997	+	970.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172785, intron 1 of 5)	intron (NM_172785, intron 1 of 5)	-1884.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	127.0	250.0	222.0	154.5	215.5	178.0
Merged-chr10-58529483-4	chr10	58528963	58529963	+	970.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162956, intron 10 of 15)	MTD|LTR|ERVL-MaLR	31526.0	NM_001162956	76138.0	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123697427-2	chr5	123696923	123697923	+	970.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027494)	TTS (NM_027494)	-13062.0	NM_001359222	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	1.0	0.5	5.0	0.0	6.5	5.0
Merged-chr4-138024851-3	chr4	138024358	138025358	+	970.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	27033.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	7.0	13.5	9.0	26.5	58.5	44.0
Merged-chr1-184562457-4	chr1	184561958	184562958	+	970.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4767.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	37.5	75.0	32.0	26.5	67.0	43.0
Merged-chr18-23809020-4	chr18	23808500	23809500	+	970.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	5030.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36068568-4	chr16	36068081	36069081	+	970.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027342, intron 1 of 4)	intron (NM_027342, intron 1 of 4)	2934.0	NM_027342	70186.0	Mm.212991	NM_027342	ENSMUSG00000003955	Fam162a	2310056P07Rik|HGTD-P	family with sequence similarity 162, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107101770-4	chr13	107101271	107102271	+	970.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79201.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-63813045-4	chr11	63812561	63813561	+	970.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR10D2|LTR|ERVK	109223.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	5.5	2.0	5.5	1.0	14.0	4.0
Merged-chr2-45194480-4	chr2	45193953	45194953	+	970.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77011.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-57639267-3	chr1	57638762	57639762	+	970.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-135599.0	NM_144882	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-26798162-3	chr10	26797654	26798654	+	970.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	25642.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	23.0	39.0	37.0	42.5	55.5	37.5
Merged-chr14-64327636-4	chr14	64327074	64328074	+	970.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253715, intron 1 of 4)	MLT1F1|LTR|ERVL-MaLR	89382.0	NM_001253716	110265.0	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-21953636-4	chr3	21953142	21954142	+	970.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123010.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-69320944-4	chr10	69320442	69321442	+	970.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31970.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24595858-4	chr16	24595349	24596349	+	970.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 4 of 12)	intron (NM_178665, intron 4 of 12)	66535.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-125123188-4	chr2	125122714	125123714	+	970.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162418, intron 1 of 14)	CpG	446.0	NM_001162417	17876.0	Mm.18535	NM_010852	ENSMUSG00000027201	Myef2	9430071B01|mKIAA1341	myelin basic protein expression factor 2, repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25156635-2	chr9	25156135	25157135	+	970.4166869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4854.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-70645026-4	chr18	70644494	70645494	+	970.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	76702.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128097351-3	chr10	128096875	128097875	+	970.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054078, intron 2 of 29)	CpG	4592.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26661919-4	chr17	26661414	26662414	+	970.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-14482.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8664134-12	chr11	8663625	8664625	+	970.4027710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	CpG	410.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	21.0	67.5	45.5	23.5	32.5	20.5
Merged-chr4-140699822-4	chr4	140699287	140700287	+	970.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1686.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	4.0	4.0	4.0	8.0	11.5	22.0
Merged-chr1-80614316-4	chr1	80613806	80614806	+	970.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 4 of 55)	RLTR20A4|LTR|ERVK	51046.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31314204-4	chr6	31313700	31314700	+	970.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040261, intron 3 of 4)	intron (NR_040261, intron 3 of 4)	84573.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106234197-3	chr9	106233705	106234705	+	970.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020559, intron 10 of 10)	intron (NM_020559, intron 10 of 10)	11607.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	8.0	20.0	12.0	17.0	12.5	25.5
Merged-chr9-90270603-7	chr9	90270140	90271140	+	970.380981	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_194334, exon 1 of 13)	exon (NM_194334, exon 1 of 13)	129.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	135.5	167.5	184.0	136.0	168.0	151.5
Merged-chr12-55552808-4	chr12	55552297	55553297	+	970.37854	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44-int|LTR|ERVK	-12408.0	NM_001277340	79459.0	Mm.392781	NM_001277340	ENSMUSG00000063129	Aldoart2	4933425L11Rik|Aldo1-ps1|Aldoa-ps1	aldolase 1 A, retrogene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69038526-4	chr8	69038013	69039013	+	970.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153054, exon 17 of 17)	3' UTR (NM_153054, exon 17 of 17)	-50223.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	23.5	54.5	49.5	15.5	51.0	39.5
Merged-chr2-18649008-4	chr2	18648446	18649446	+	970.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23516.0	NM_147778	12238.0	Mm.249586	NM_147778	ENSMUSG00000051154	Commd3	AW550818|Bup|D2Ertd542e	COMM domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-89351697-4	chr4	89351196	89352196	+	970.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132431, intron 2 of 9)	intron (NR_132431, intron 2 of 9)	-40664.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	4.5	3.5	0.0	0.0	14.0	7.5
Merged-chr1-75188119-4	chr1	75187618	75188618	+	970.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003917, intron 5 of 15)	intron (NM_001003917, intron 5 of 15)	3892.0	NM_001003917	245860.0	Mm.238266	NM_001003917	ENSMUSG00000033124	Atg9a	AU019532|Apg9l1|Atg9|Atg9l1	autophagy related 9A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112688551-4	chr12	112688094	112689094	+	970.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9754.0	NM_001100460	382639.0	Mm.11350	NM_001100460	ENSMUSG00000037638	Zbtb42	EG382639|Gm5188|simiRP58	zinc finger and BTB domain containing 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29053119-4	chr2	29052612	29053612	+	970.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166705, intron 1 of 5)	intron (NM_001166705, intron 1 of 5)	1954.0	NM_001166705	329375.0	Mm.425079	NM_001085514	ENSMUSG00000079502	Cfap77	1700101E01Rik|Gm823	cilia and flagella associated protein 77	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84832376-5	chr8	84831971	84832971	+	970.3666380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033145)	promoter-TSS (NR_033145)	189.0	NM_183358	102060.0	Mm.489649	NM_183358	ENSMUSG00000033751	Gadd45gip1	2310040G17Rik|AI425883|Crif1|MRP-L59|Plinp1	growth arrest and DNA-damage-inducible, gamma interacting protein 1	protein-coding	22.0	55.5	43.5	18.0	66.0	51.0
Merged-chr12-87488928-4	chr12	87488440	87489440	+	970.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-16641.0	NM_025507	66354.0	Mm.271174	NM_025507	ENSMUSG00000021039	Snw1	2310008B08Rik|AW048543|NCoA-62|SKIP|Skiip	SNW domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95347136-2	chr13	95346636	95347636	+	970.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16525.0	NR_034043	100217450.0	Mm.442313	NR_034043	ENSMUSG00000088108	Snora47	MBI-115	small nucleolar RNA, H/ACA box 47	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-51696909-4	chr15	51696402	51697402	+	970.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	168559.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr7-68112795-4	chr7	68112322	68113322	+	970.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	151411.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	4.5	5.5	12.0	4.0	25.5	13.0
Merged-chr9-118664662-5	chr9	118664057	118665057	+	970.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 8 of 27)	intron (NM_133721, intron 8 of 27)	-47135.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	40.0	110.0	98.0	48.0	107.5	82.5
Merged-chr16-33381340-3	chr16	33380843	33381843	+	970.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358570)	promoter-TSS (NM_001358570)	41.0	NM_001358570	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80011985-3	chr15	80011559	80012559	+	970.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011057, intron 1 of 6)	intron (NM_011057, intron 1 of 6)	2749.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	5.0	9.0	19.0	14.5	19.0	44.5
Merged-chr10-86883474-4	chr10	86882954	86883954	+	970.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 44 of 68)	intron (NM_138673, intron 44 of 68)	104449.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143511739-3	chr5	143511249	143512249	+	970.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347530, intron 3 of 6)	intron (NM_001347530, intron 3 of 6)	16244.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81925733-1	chr15	81925233	81926233	+	970.3333130000001	f1_balb.idr	intron (NM_030229, intron 1 of 5)	intron (NM_030229, intron 1 of 5)	480.0	NM_030229	78929.0	Mm.215115	NM_030229	ENSMUSG00000022476	Polr3h	5031409G22Rik|RPC8	polymerase (RNA) III (DNA directed) polypeptide H	protein-coding	20.0	6.5	15.5	21.0	7.0	15.5
Merged-chr13-16912443-4	chr13	16911936	16912936	+	970.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138654, intron 13 of 13)	intron (NM_138654, intron 13 of 13)	782329.0	NM_138654	192136.0	Mm.364180	NM_138654	ENSMUSG00000055137	Sugct	5033411D12Rik|D17907	succinyl-CoA glutarate-CoA transferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-14597465-7	chr19	14596883	14597883	+	970.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302951)	promoter-TSS (NM_001302951)	-170.0	NM_001302951	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6679182-3	chr11	6678697	6679697	+	970.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18961.0	NR_028586	100041311.0	Mm.388018	NR_028586	ENSMUSG00000086373	Gm11978	-	predicted gene 11978	pseudo	0.0	0.0	0.0	0.0	0.0	3.0
Merged-chr19-9071630-4	chr19	9071156	9072156	+	970.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104460, intron 6 of 6)	intron (NR_104460, intron 6 of 6)	16300.0	NM_011681	22287.0	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-24178917-4	chr18	24178427	24179427	+	970.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-26417.0	NM_013814	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73201813-4	chr12	73201321	73202321	+	970.30835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008612, intron 6 of 7)	intron (NM_008612, intron 6 of 7)	78104.0	NM_008612	17420.0	Mm.246750	NM_008612	ENSMUSG00000021103	Mnat1	E130115E11Rik|MAT1|P36	menage a trois 1	protein-coding	7.0	0.0	3.5	6.0	3.0	0.0
Merged-chr4-99208640-4	chr4	99208141	99209141	+	970.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175029, intron 1 of 10)	RLTR49|LTR|ERVK	14494.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	22.0	77.0	49.5	11.0	42.0	39.5
Merged-chr12-70471557-4	chr12	70471071	70472071	+	970.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037248, intron 2 of 4)	intron (NR_037248, intron 2 of 4)	18417.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	5.0	19.0	13.5	13.5	22.0	20.5
Merged-chr18-69570497-4	chr18	69569991	69570991	+	970.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	224331.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107556402-5	chr9	107555825	107556825	+	970.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019713, intron 1 of 4)	intron (NM_019713, intron 1 of 4)	1742.0	NM_019713	56289.0	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	68.5	133.5	97.5	45.5	123.5	81.5
Merged-chr5-43102792-4	chr5	43102294	43103294	+	970.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130669.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	3.5	13.0	9.0	4.5	2.5	10.0
Merged-chr5-124531065-7	chr5	124530509	124531509	+	970.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021430, exon 1 of 7)	5' UTR (NM_021430, exon 1 of 7)	382.0	NM_021430	75695.0	Mm.41180	NM_021430	ENSMUSG00000029392	Rilpl1	2900002H16Rik|6330559I19Rik|GOSPEL	Rab interacting lysosomal protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31867014-3	chr16	31866531	31867531	+	970.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357281, intron 21 of 22)	L1M4c|LINE|L1	-11779.0	NM_013900	30060.0	Mm.30988	NM_013900	ENSMUSG00000022780	Meltf	CD228|MTf|Mfi2	melanotransferrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34850956-6	chr1	34850431	34851431	+	970.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145516, intron 1 of 7)	intron (NM_145516, intron 1 of 7)	942.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-13575325-6	chr2	13574759	13575759	+	970.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011701, intron 1 of 8)	intron (NM_011701, intron 1 of 8)	948.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-32184286-4	chr14	32183819	32184819	+	970.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016897, intron 6 of 6)	intron (NM_016897, intron 6 of 6)	17572.0	NM_016897	53600.0	Mm.303703	NM_016897	ENSMUSG00000013701	Timm23	Tim23	translocase of inner mitochondrial membrane 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115530208-4	chr8	115529701	115530701	+	970.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	176693.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-65605601-2	chr4	65605101	65606101	+	970.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161782, intron 1 of 1)	intron (NM_001161782, intron 1 of 1)	615.0	NM_001161782	69807.0	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-34238685-4	chr15	34238149	34239149	+	970.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033521, intron 1 of 6)	CpG	623.0	NM_033521	114128.0	Mm.197518	NM_033521	ENSMUSG00000022257	Laptm4b	C330023P13Rik|LAPTM4beta	lysosomal-associated protein transmembrane 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78580603-3	chr15	78580114	78581114	+	970.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155437, intron 1 of 1)	intron (NR_155437, intron 1 of 1)	975.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	10.5	29.5	10.0	2.5	25.0	10.5
Merged-chr3-13582431-2	chr3	13581931	13582931	+	970.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357034, intron 1 of 7)	L1_Mus2|LINE|L1	70434.0	NR_040598	75203.0	Mm.490940	NR_040598		4930539N22Rik	-	RIKEN cDNA 4930539N22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13962547-2	chr10	13962050	13963050	+	970.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3525.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	9.0	3.0	0.0	10.5	3.0	3.0
Merged-chr10-44632927-4	chr10	44632389	44633389	+	970.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-174141.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27019125-2	chr17	27018628	27019628	+	970.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007523)	TTS (NM_007523)	1093.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	4.5	2.0	6.0	1.0	1.5	3.0
Merged-chr12-85604534-4	chr12	85604028	85605028	+	970.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 1 of 3)	intron (NM_001205053, intron 1 of 3)	4510.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-137969397-3	chr2	137968918	137969918	+	970.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-287166.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-174029610-3	chr1	174029048	174030048	+	970.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172648, intron 1 of 6)	intron (NM_172648, intron 1 of 6)	2207.0	NM_172648	226695.0	Mm.425061	NM_172648	ENSMUSG00000054203	Ifi205	D3|D3cDNA|Ifi205a	interferon activated gene 205	protein-coding	16.5	38.0	30.0	26.5	25.5	25.0
Merged-chr14-57264156-4	chr14	57263650	57264650	+	970.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130539.0	NM_001010937	14623.0	Mm.25652	NM_008128	ENSMUSG00000040055	Gjb6	AA958971|Cx30|D14Bwg0506e	gap junction protein, beta 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-26068475-4	chr12	26068005	26069005	+	970.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	142000.0	NR_131149	629481.0	Mm.390460	NR_131149	ENSMUSG00000113550	Gm29687	-	predicted gene, 29687	ncRNA	1.0	1.5	0.0	3.0	0.0	11.0
Merged-chr18-53059279-4	chr18	53058763	53059763	+	970.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117029.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83223496-4	chr11	83222980	83223980	+	970.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015519)	promoter-TSS (NR_015519)	-96.0	NR_015519	100043636.0	Mm.295569	NR_015519	ENSMUSG00000087107	AI662270	AW496474	expressed sequence AI662270	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19180930-4	chr7	19180421	19181421	+	970.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162996)	promoter-TSS (NM_001162996)	-249.0	NM_001162996	72205.0	Mm.154121	NM_028153	ENSMUSG00000040811	Eml2	1600029N02Rik|EMAP-2	echinoderm microtubule associated protein like 2	protein-coding	0.0	0.0	3.0	0.0	1.0	2.0
Merged-chr10-108163002-5	chr10	108162447	108163447	+	970.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027892, intron 1 of 25)	intron (NM_027892, intron 1 of 25)	547.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134595016-5	chr6	134594445	134595445	+	970.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	-28032.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	3.0	32.0	19.0	25.0	42.0	37.0
Merged-chr1-171466769-4	chr1	171466243	171467243	+	970.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	29182.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	39.0	100.5	98.5	24.0	102.5	70.0
Merged-chr1-62703415-8	chr1	62702970	62703970	+	970.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010939, exon 1 of 16)	5' UTR (NM_010939, exon 1 of 16)	153.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121587609-4	chr10	121587104	121588104	+	970.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019786)	promoter-TSS (NM_019786)	-810.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8776131-4	chr10	8775622	8776622	+	970.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	109948.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	22.0	34.5	22.0	18.0	19.5	24.5
Merged-chr8-128558187-3	chr8	128557684	128558684	+	970.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127470.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	9.5	16.5	21.0	34.0	62.0	71.5
Merged-chr7-66175969-4	chr7	66175463	66176463	+	970.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66448.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11762227-4	chr11	11761712	11762712	+	970.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025597, intron 7 of 7)	intron (NM_001025597, intron 7 of 7)	46750.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	7.5	51.5	51.0	16.5	61.0	41.0
Merged-chr9-122257187-3	chr9	122256666	122257666	+	970.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133979, exon 9 of 13)	exon (NM_133979, exon 9 of 13)	16862.0	NR_106185	102465896.0		NR_106185	ENSMUSG00000098922	Mir8106	Gm27594|mmu-mir-8106	microRNA 8106	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-15128539-3	chr3	15128029	15129029	+	970.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	157328.0	NR_040550	77127.0	Mm.195792	NR_040549	ENSMUSG00000098008	A930001A20Rik	-	RIKEN cDNA A930001A20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21453895-4	chr11	21453397	21454397	+	970.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57283.0	NR_028259	237694.0	Mm.72926	NM_172792	ENSMUSG00000078962	4932414J04Rik	-	RIKEN cDNA 4932414J04 gene	ncRNA	4.0	36.0	3.0	21.0	17.5	6.5
Merged-chr18-75305388-2	chr18	75304888	75305888	+	970.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8059.0	NR_045393	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-19761121-2	chr16	19760621	19761621	+	970.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_054052, intron 2 of 3)	CpG	887.0	NM_001159407	108105.0	Mm.33935	NM_054052	ENSMUSG00000022686	B3gnt5	beta3GnT5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64715468-4	chr17	64714964	64715964	+	970.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 16 of 21)	intron (NM_008549, intron 16 of 21)	-51647.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-61393185-4	chr3	61392660	61393660	+	970.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	28653.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4189843-4	chr12	4189334	4190334	+	970.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 3 of 21)	intron (NM_001159537, intron 3 of 21)	44131.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-37010556-4	chr16	37010040	37011040	+	970.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1246.0	NM_029977	77782.0	Mm.259114	NM_029977	ENSMUSG00000034206	Polq	A430110D14Rik	polymerase (DNA directed), theta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38227888-4	chr18	38227414	38228414	+	970.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME3Cz|LINE|L1	-18152.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0.0	10.5	10.0	0.0	7.5	9.5
Merged-chr8-46817424-4	chr8	46816907	46817907	+	970.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 5 of 7)	intron (NR_152560, intron 5 of 7)	77662.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-17335048-4	chr19	17334572	17335572	+	970.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	4433.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	58.5	232.0	125.0	23.0	42.0	34.5
Merged-chr5-77246349-4	chr5	77245862	77246862	+	970.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19132.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16043658-4	chr7	16043149	16044149	+	970.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28196.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-26244023-4	chr7	26243541	26244541	+	970.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22790.0	NM_001167540	100312477.0	Mm.480246	NM_001167540	ENSMUSG00000046130	Vmn1r184	-	vomeronasal 1 receptor, 184	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118370646-4	chr10	118370143	118371143	+	970.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70403.0	NM_008337	15978.0	Mm.240327	NM_008337	ENSMUSG00000055170	Ifng	IFN-g|Ifg	interferon gamma	protein-coding	0.0	6.5	4.0	0.0	0.0	2.5
Merged-chr8-126917702-3	chr8	126917197	126918197	+	970.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28224.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-140112397-7	chr7	140111929	140112929	+	970.108826	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_053119, exon 3 of 8)	exon (NM_053119, exon 3 of 8)	3994.0	NM_053119	93747.0	Mm.24452	NM_053119	ENSMUSG00000025465	Echs1	C80529	enoyl Coenzyme A hydratase, short chain, 1, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-66973351-4	chr6	66972874	66973874	+	970.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177560, intron 3 of 4)	intron (NM_001177560, intron 3 of 4)	-63225.0	NR_040278	320172.0	Mm.449039	NR_040278	ENSMUSG00000087231	E230016M11Rik	-	RIKEN cDNA E230016M11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79372864-7	chr8	79372392	79373392	+	970.095215	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	26576.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144693290-4	chr3	144692772	144693772	+	970.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 9 of 10)	intron (NM_001282037, intron 9 of 10)	27063.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32394554-4	chr18	32394033	32395033	+	970.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 1 of 17)	LTR16B|LTR|ERVL	-16249.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55233743-4	chr19	55233269	55234269	+	970.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 3 of 20)	intron (NM_001081076, intron 3 of 20)	7467.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34242549-7	chr5	34242050	34243050	+	970.0476070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 2 of 12)	intron (NM_001015039, intron 2 of 12)	45774.0	NM_001015039	231125.0	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-101892301-4	chr12	101891803	101892803	+	970.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028446, intron 7 of 20)	intron (NM_028446, intron 7 of 20)	-20364.0	NR_152255	100504056.0	Mm.416837	NR_152255		Gm20036	-	predicted gene, 20036	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47755152-4	chr19	47754647	47755647	+	970.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106165)	promoter-TSS (NR_106165)	10.0	NR_106165	102465883.0		NR_106165	ENSMUSG00000099069	Mir8090	Gm27862|mmu-mir-8090	microRNA 8090	ncRNA	8.5	16.5	9.5	0.5	11.0	11.0
Merged-chr6-124957530-4	chr6	124957015	124958015	+	970.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164089)	TTS (NM_001164089)	8023.0	NM_012003	26894.0	Mm.244536	NM_012003	ENSMUSG00000030127	Cops7a	D6Ertd35e|SGN7a	COP9 signalosome subunit 7A	protein-coding	14.0	11.0	22.0	15.5	36.0	23.0
Merged-chr11-106994464-4	chr11	106993941	106994941	+	970.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010655, intron 3 of 10)	Lx8|LINE|L1	5084.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	41.5	80.5	48.5	13.0	6.0	10.5
Merged-chr7-122159426-4	chr7	122158998	122159998	+	970.0285640000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011121)	promoter-TSS (NM_011121)	63.0	NM_011121	18817.0	Mm.16525	NM_011121	ENSMUSG00000030867	Plk1	Plk|STPK13	polo like kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101978683-4	chr15	101978193	101979193	+	970.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24406.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-131352917-1	chr6	131352417	131353417	+	970.0	f1_c57bl6.idr	Intergenic	Intergenic	35533.0	NM_139117	56449.0	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	0.5	0.5	2.5	1.5	4.0	1.5
Merged-chr9-99107847-4	chr9	99107367	99108367	+	970.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 2 of 23)	intron (NM_029094, intron 2 of 23)	32344.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-69524304-1	chr13	69523804	69524804	+	970.0	f1_c57bl6.idr	intron (NM_198600, intron 1 of 12)	intron (NM_198600, intron 1 of 12)	9560.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	3.5	14.0	6.5	15.5	14.0	5.0
Merged-chr19-21441036-3	chr19	21440512	21441512	+	970.0	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_010266, intron 1 of 13)	L1MC4|LINE|L1	31649.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	0.5	10.5	5.0	0.0	0.0	4.0
Merged-chr8-70870940-1	chr8	70870440	70871440	+	970.0	f1_balb.idr	intron (NM_026964, intron 1 of 4)	intron (NM_026964, intron 1 of 4)	2550.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	0.5	1.0	2.0	5.0	3.0	5.0
Merged-chr14-31398262-2	chr14	31397762	31398762	+	970.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	(TG)n|Simple_repeat|Simple_repeat	19415.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76614544-4	chr12	76614028	76615028	+	970.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013675, intron 15 of 35)	intron (NM_013675, intron 15 of 35)	-66603.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120352109-2	chr11	120351609	120352609	+	970.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_038126)	TTS (NR_038126)	3431.0	NR_038126	66838.0	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100121052-4	chr7	100120595	100121595	+	970.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133692, intron 1 of 11)	intron (NM_133692, intron 1 of 11)	405.0	NM_133692	67967.0	Mm.37562	NM_133692	ENSMUSG00000030726	Pold3	2410142G14Rik|C85233|P66|P68	polymerase (DNA-directed), delta 3, accessory subunit	protein-coding	17.5	39.0	49.5	25.0	79.5	58.0
Merged-chr9-45244078-5	chr9	45243592	45244592	+	970.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 3 of 4)	intron (NM_001198971, intron 3 of 4)	22615.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	14.0	36.0	20.0	13.0	35.5	19.5
Merged-chr13-37894398-1	chr13	37893898	37894898	+	970.0	f0_balb.idr	non-coding (NR_033615, exon 4 of 10)	non-coding (NR_033615, exon 4 of 10)	5527.0	NM_001177869	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116416386-3	chr6	116415883	116416883	+	970.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009662, intron 7 of 13)	ORR1E|LTR|ERVL-MaLR	44795.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6188015-3	chr11	6187551	6188551	+	970.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173748, intron 2 of 5)	intron (NM_173748, intron 2 of 5)	12400.0	NM_173748	209586.0	Mm.25321	NM_173748	ENSMUSG00000053838	Nudcd3	AI427847|BC024322|mKIAA1068	NudC domain containing 3	protein-coding	1.0	0.5	0.0	1.0	1.0	0.0
Merged-chr18-61229841-3	chr18	61229335	61230335	+	970.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146086, intron 1 of 21)	intron (NM_146086, intron 1 of 21)	9336.0	NM_146086	225600.0	Mm.391106	NM_146086	ENSMUSG00000024575	Pde6a	Pdea|nmf282	phosphodiesterase 6A, cGMP-specific, rod, alpha	protein-coding	1.5	8.0	0.0	0.0	0.5	3.0
Merged-chr3-132154449-3	chr3	132153956	132154956	+	970.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020265, intron 1 of 3)	intron (NM_020265, intron 1 of 3)	69164.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-73276284-2	chr10	73275784	73276784	+	970.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-189579.0	NR_040646	327768.0	Mm.417745	NR_040646	ENSMUSG00000111994	A330049N07Rik	-	RIKEN cDNA A330049N07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47003903-1	chr19	47003403	47004403	+	970.0	f0_balb.idr	intron (NM_001164363, intron 1 of 17)	Lx8b|LINE|L1	-10795.0	NM_146100	226180.0	Mm.276251	NM_146100	ENSMUSG00000034336	Ina	AV028420|NF-66|NF66	internexin neuronal intermediate filament protein, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76536337-2	chr15	76535837	76536837	+	970.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013909, exon 8 of 9)	exon (NM_013909, exon 8 of 9)	2409.0	NM_013909	30840.0	Mm.275279	NM_013909	ENSMUSG00000022559	Fbxl6	AU021795|Fbl6	F-box and leucine-rich repeat protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-41038689-4	chr3	41038168	41039168	+	970.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44378.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131212378-2	chr2	131211878	131212878	+	970.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355593, intron 2 of 2)	intron (NM_001355593, intron 2 of 2)	2018.0	NR_110992	69596.0	Mm.2937	NM_027129	ENSMUSG00000068264	Ap5s1	0610038L13Rik|2310035K24Rik|AW060727|sigma5	adaptor-related protein 5 complex, sigma 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90216204-1	chr9	90215704	90216704	+	970.0	f1_balb.idr	intron (NM_194334, intron 9 of 12)	intron (NM_194334, intron 9 of 12)	53226.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	9.5	15.5	18.5	3.0	17.5	20.5
Merged-chr12-16867419-1	chr12	16866919	16867919	+	970.0	f1_c57bl6.idr	Intergenic	Intergenic	-27559.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	1.0	10.0	5.0	1.0	12.5	9.0
Merged-chr17-13682808-4	chr17	13682304	13683304	+	970.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77737.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	0.0	7.0	2.0	1.0	4.5	5.5
Merged-chr2-26454898-2	chr2	26454398	26455398	+	970.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152209, intron 1 of 2)	intron (NR_152209, intron 1 of 2)	8974.0	NR_152207	100125929.0	Mm.392411	NR_152207		0610009E02Rik	-	RIKEN cDNA 0610009E02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137072776-3	chr5	137072248	137073248	+	970.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008871)	promoter-TSS (NM_008871)	-476.0	NM_008871	18787.0	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	0.5	0.0	6.0	3.5	0.0	5.0
Merged-chr12-111376786-3	chr12	111376270	111377270	+	970.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183016, intron 1 of 36)	intron (NM_183016, intron 1 of 36)	948.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-48895667-2	chr13	48895167	48896167	+	970.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033268, intron 12 of 17)	intron (NM_001033268, intron 12 of 17)	-24782.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70679521-1	chr9	70679021	70680021	+	970.0	f0_balb.idr	intron (NM_007399, intron 1 of 15)	CpG	539.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87324257-1	chr17	87323757	87324757	+	970.0	f1_balb.idr	intron (NM_028639, intron 8 of 19)	intron (NM_028639, intron 8 of 19)	41371.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr3-121723217-7	chr3	121722707	121723707	+	969.9892580000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010171)	promoter-TSS (NM_010171)	-330.0	NM_010171	14066.0	Mm.273188	NM_010171	ENSMUSG00000028128	F3	AA409063|CD142|Cf-3|Cf3|TF	coagulation factor III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136683370-4	chr1	136682888	136683888	+	969.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045324)	promoter-TSS (NR_045324)	-8.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-85497094-4	chr9	85496607	85497607	+	969.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-169957.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	6.5	11.0	4.0	0.0	22.0	14.0
Merged-chr9-107312976-4	chr9	107312471	107313471	+	969.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16312.0	NM_001317354	12700.0	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	76.5	137.0	67.0	45.0	63.5	31.0
Merged-chr7-141579211-3	chr7	141578662	141579662	+	969.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357068, intron 1 of 21)	intron (NM_001357068, intron 1 of 21)	16982.0	NM_007459	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113152035-4	chr12	113151499	113152499	+	969.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007763)	promoter-TSS (NM_007763)	-13.0	NM_007763	12925.0	Mm.272368	NM_007763	ENSMUSG00000006360	Crip1	CRHP|CRP1|Crip	cysteine-rich protein 1 (intestinal)	protein-coding	17.0	28.5	17.5	15.5	24.5	15.5
Merged-chr18-89607625-4	chr18	89607131	89608131	+	969.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039173, intron 1 of 7)	B4A|SINE|B4	161505.0	NM_001039173	623279.0	Mm.447164	NM_001039173	ENSMUSG00000073514	Dok6	Dok-6	docking protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-10556040-4	chr10	10555554	10556554	+	969.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026405, intron 1 of 2)	intron (NM_026405, intron 1 of 2)	2153.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98966827-4	chr10	98966384	98967384	+	969.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	51732.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63385977-4	chr4	63385468	63386468	+	969.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 6 of 21)	intron (NM_001045514, intron 6 of 21)	12272.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101357906-2	chr7	101357409	101358409	+	969.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	9840.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	1.0	0.5	12.0	0.0	26.0	6.0
Merged-chr10-24823967-5	chr10	24823459	24824459	+	969.904785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134005, intron 4 of 24)	intron (NM_134005, intron 4 of 24)	12236.0	NM_134005	209558.0	Mm.338425	NM_134005	ENSMUSG00000019989	Enpp3	AI876438|CD203c	ectonucleotide pyrophosphatase/phosphodiesterase 3	protein-coding	32.5	92.0	38.0	39.0	63.0	28.5
Merged-chr1-91096696-4	chr1	91096207	91097207	+	969.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 10 of 22)	intron (NM_008515, intron 10 of 22)	43263.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8567351-4	chr11	8566837	8567837	+	969.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	97198.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	102.0	164.5	117.5	105.5	258.5	184.5
Merged-chr19-42753829-3	chr19	42753332	42754332	+	969.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C2|LTR|ERVK	-1057.0	NM_029011	74580.0	Mm.329858	NM_029011	ENSMUSG00000060224	Pyroxd2	3830409H07Rik|4833409A17Rik	pyridine nucleotide-disulphide oxidoreductase domain 2	protein-coding	3.5	0.5	1.0	2.0	0.5	0.0
Merged-chr7-43310626-3	chr7	43310116	43311116	+	969.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027264, intron 2 of 4)	intron (NM_027264, intron 2 of 4)	2684.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134994347-3	chr6	134993883	134994883	+	969.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12382.0	NM_001109914	381823.0	Mm.296104	NM_001109914	ENSMUSG00000090698	Apold1	Gm1075	apolipoprotein L domain containing 1	protein-coding	12.0	10.0	1.5	1.5	20.0	7.0
Merged-chr4-143288631-3	chr4	143288149	143289149	+	969.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010329, intron 1 of 5)	intron (NM_010329, intron 1 of 5)	10915.0	NM_010329	14726.0	Mm.2976	NM_010329	ENSMUSG00000028583	Pdpn	E11|Gp38|OTS-8|RANDAM-2|T1-alpha|T1a|T1alpha	podoplanin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31100215-4	chr3	31099701	31100701	+	969.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039090, intron 2 of 6)	intron (NM_001039090, intron 2 of 6)	5143.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150860716-4	chr4	150860220	150861220	+	969.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133753, intron 1 of 3)	intron (NM_133753, intron 1 of 3)	5650.0	NM_133753	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22348729-4	chr16	22348222	22349222	+	969.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53734.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92487451-4	chr5	92486956	92487956	+	969.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	18201.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30282946-4	chr7	30282403	30283403	+	969.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_144498, intron 2 of 2)	RMER19B|LTR|ERVK	-2482.0	NM_146186	233064.0	Mm.271677	NM_146186	ENSMUSG00000037020	Wdr62	2310038K02Rik|b2b1508Clo	WD repeat domain 62	protein-coding	26.0	63.5	42.5	68.0	141.0	132.5
Merged-chr9-102792013-3	chr9	102791487	102792487	+	969.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42933.0	NM_013649	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	10.5	0.5	0.5	0.0	6.5	6.5
Merged-chr7-7210018-4	chr7	7209510	7210510	+	969.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145577)	promoter-TSS (NM_145577)	-12.0	NM_145577	232855.0	Mm.360403	NM_145577	ENSMUSG00000066838	Zfp772	-	zinc finger protein 772	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3432758-4	chr5	3432255	3433255	+	969.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 4 of 7)	intron (NM_009873, intron 4 of 7)	88862.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49189231-4	chr13	49188690	49189690	+	969.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013610, intron 1 of 3)	intron (NM_013610, intron 1 of 3)	1643.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160252130-4	chr2	160251623	160252623	+	969.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	75371.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37472830-4	chr19	37472334	37473334	+	969.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	7580.0	NR_131009	78640.0	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	3.0	17.5	13.5	0.0	9.0	11.5
Merged-chr1-134091239-2	chr1	134090739	134091739	+	969.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12084.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-118548286-2	chr4	118547786	118548786	+	969.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4560.0	NM_172383	230678.0	Mm.23639	NM_172383	ENSMUSG00000050854	Tmem125	6330530A05Rik|AV223516	transmembrane protein 125	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100453332-3	chr13	100452821	100453821	+	969.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008670)	promoter-TSS (NM_008670)	-457.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19183614-4	chr3	19183127	19184127	+	969.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3693.0	NM_001253390	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-32544311-4	chr6	32543803	32544803	+	969.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 1 of 31)	intron (NM_175750, intron 1 of 31)	33162.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111036393-4	chr12	111035894	111036894	+	969.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3404.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109255405-4	chr4	109254868	109255868	+	969.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001285895)	TTS (NM_001285895)	19736.0	NM_001033226	108802.0	Mm.318248	NM_001033226	ENSMUSG00000028558	Calr4	4933403L16Rik|AU017583	calreticulin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-93428539-5	chr13	93428049	93429049	+	969.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71259.0	NM_021310	57748.0	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding	8.5	13.0	0.0	8.5	15.0	0.0
Merged-chr19-47138309-4	chr19	47137808	47138808	+	969.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133746)	promoter-TSS (NM_133746)	-14.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	0.0	1.5	1.0	0.0	5.0	1.5
Merged-chr3-104460328-3	chr3	104459827	104460827	+	969.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025067, intron 17 of 17)	B4A|SINE|B4	51591.0	NM_001025067	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	4.5	14.0	7.0	13.0	15.0	10.5
Merged-chr8-84709305-4	chr8	84708772	84709772	+	969.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081982, intron 9 of 9)	intron (NM_001081982, intron 9 of 9)	7815.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-10869183-7	chr15	10868650	10869650	+	969.816345	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40099.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19203165-4	chr7	19202660	19203660	+	969.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347582, intron 20 of 21)	intron (NM_001347582, intron 20 of 21)	-9378.0	NM_175668	319197.0	Mm.135984	NM_175668	ENSMUSG00000044317	Gpr4	-	G protein-coupled receptor 4	protein-coding	5.0	10.0	1.0	5.5	0.0	3.0
Merged-chr3-14832981-3	chr3	14832461	14833461	+	969.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24596.0	NM_009799	12346.0	Mm.273195	NM_009799	ENSMUSG00000027556	Car1	AW555628|Ca1|Car-1	carbonic anhydrase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	4.5
Merged-chr7-89337988-4	chr7	89337483	89338483	+	969.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 2 of 14)	intron (NM_001360746, intron 2 of 14)	804.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-65549132-4	chr16	65548619	65549619	+	969.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026879, intron 2 of 5)	CYRA11_Mm|Unknown|Y-chromosome	13578.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17764277-3	chr12	17763852	17764852	+	969.761902	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	73543.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	9.0	9.5	9.5	9.0	10.0	2.0
Merged-chr11-19493444-5	chr11	19492905	19493905	+	969.753357	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	428130.0	NR_046037	74059.0	Mm.292321	NR_046037	ENSMUSG00000086025	4933406G16Rik	-	RIKEN cDNA 4933406G16 gene	ncRNA	1.0	5.0	4.5	1.0	0.0	1.5
Merged-chr9-108564271-2	chr9	108563771	108564771	+	969.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011830, intron 9 of 13)	intron (NM_011830, intron 9 of 13)	3071.0	NM_023247	66706.0	Mm.29471	NM_023247	ENSMUSG00000070283	Ndufaf3	4733401H18Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-78054113-4	chr2	78053613	78054613	+	969.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_108098, intron 1 of 6)	MER34A|LTR|ERV1	2936.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109357863-4	chr3	109357366	109358366	+	969.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 1 of 26)	intron (NM_020505, intron 1 of 26)	17183.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98693620-4	chr13	98693117	98694117	+	969.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025606, intron 1 of 3)	intron (NM_001025606, intron 1 of 3)	1214.0	NM_001025606	380863.0	Mm.28264	NM_001025606	ENSMUSG00000052485	Tmem171	Gm905	transmembrane protein 171	protein-coding	16.0	19.5	10.5	12.5	13.5	5.5
Merged-chr1-94581597-2	chr1	94581097	94582097	+	969.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-215845.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-37142037-4	chr3	37141538	37142538	+	969.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B5_MM|LTR|ERVK	-16084.0	NM_008366	16183.0	Mm.14190	NM_008366	ENSMUSG00000027720	Il2	Il-2	interleukin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-62283802-4	chr1	62283302	62284302	+	969.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081050, intron 16 of 22)	intron (NM_001081050, intron 16 of 22)	-147693.0	NR_151537	105243940.0		NR_151537		Pard3bos2	Gm12747	par-3 family cell polarity regulator beta, opposite strand 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-86861749-4	chr8	86861236	86862236	+	969.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030563, exon 2 of 7)	exon (NM_030563, exon 2 of 7)	23522.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	8.0	37.0	21.5	8.5	37.0	22.0
Merged-chr3-68870499-2	chr3	68869999	68870999	+	969.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001167996, exon 1 of 1)	3' UTR (NM_001167996, exon 1 of 1)	913.0	NM_001167996	68725.0	Mm.45741	NM_001167996	ENSMUSG00000046999	1110032F04Rik	AI115547	RIKEN cDNA 1110032F04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5661671-4	chr19	5661142	5662142	+	969.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164480, intron 1 of 16)	intron (NM_001164480, intron 1 of 16)	2065.0	NM_001164482	20469.0	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160018553-4	chr2	160018056	160019056	+	969.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040499, intron 1 of 3)	intron (NR_040499, intron 1 of 3)	1903.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45652564-4	chr19	45652067	45653067	+	969.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013907, intron 1 of 8)	intron (NM_013907, intron 1 of 8)	7626.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	0.0	3.5	0.5	0.0	0.0	1.5
Merged-chr11-61564824-3	chr11	61564334	61565334	+	969.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252189, intron 1 of 8)	intron (NM_001252189, intron 1 of 8)	14853.0	NM_010148	13855.0	Mm.139695	NM_010148	ENSMUSG00000001036	Epn2	9530051D10Rik|AA536924|Ibp2	epsin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79210135-3	chr8	79209640	79210640	+	969.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026315)	TTS (NM_026315)	38443.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151264978-3	chr1	151264481	151265481	+	969.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79505.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132109599-4	chr2	132109066	132110066	+	969.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	B3A|SINE|B2	35542.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27289206-4	chr2	27288700	27289700	+	969.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 11 of 29)	intron (NR_133905, intron 11 of 29)	-41897.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44512208-4	chr9	44511746	44512746	+	969.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030256)	TTS (NM_030256)	13110.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	10.0	31.5	26.0	13.0	29.0	16.5
Merged-chr17-44710069-4	chr17	44709574	44710574	+	969.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271627, intron 4 of 7)	intron (NM_001271627, intron 4 of 7)	26102.0	NR_073425	12393.0	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103972113-3	chr2	103971670	103972670	+	969.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142336, intron 2 of 3)	intron (NM_001142336, intron 2 of 3)	1883.0	NM_001142335	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-59265054-4	chr3	59264558	59265558	+	969.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177855, exon 36 of 44)	exon (NM_177855, exon 36 of 44)	-2073.0	NM_001357010	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	23.0	28.5	46.0	15.0	60.5	35.0
Merged-chr9-16313465-4	chr9	16312957	16313957	+	969.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 1 of 24)	ID_B1|SINE|B4	64774.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85533810-4	chr12	85533297	85534297	+	969.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	59907.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121249944-4	chr9	121249461	121250461	+	969.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177589, intron 15 of 36)	intron (NM_177589, intron 15 of 36)	27211.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	4.0	25.5	15.0	0.5	1.0	7.5
Merged-chr10-118407031-4	chr10	118406530	118407530	+	969.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34016.0	NM_008337	15978.0	Mm.240327	NM_008337	ENSMUSG00000055170	Ifng	IFN-g|Ifg	interferon gamma	protein-coding	4.0	2.0	0.0	0.0	0.0	0.0
Merged-chr3-152800239-3	chr3	152799744	152800744	+	969.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86144.0	NM_025662	329777.0	Mm.331447	NM_025662	ENSMUSG00000039047	Pigk	3000001O05Rik|Gm38470|PIG-K	phosphatidylinositol glycan anchor biosynthesis, class K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83124051-2	chr15	83123551	83124551	+	969.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1250.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-77275282-4	chr2	77274780	77275780	+	969.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175465, intron 1 of 17)	intron (NM_175465, intron 1 of 17)	5312.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-75769091-2	chr16	75768591	75769591	+	969.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-2273.0	NM_030201	110920.0	Mm.26704	NM_030201	ENSMUSG00000032932	Hspa13	1600002I10Rik|AV006182|B230217N24Rik|Stch	heat shock protein 70 family, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35256624-2	chr17	35256124	35257124	+	969.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5335.0	NR_106169	102465886.0		NR_106169	ENSMUSG00000098269	Mir8094	Gm27513|mmu-mir-8094	microRNA 8094	ncRNA	0.0	3.0	4.5	0.0	5.5	2.5
Merged-chr17-28217250-2	chr17	28216750	28217750	+	969.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_027185, intron 2 of 10)	intron (NM_027185, intron 2 of 10)	9472.0	NM_027185	23853.0	Mm.204731	NM_027185	ENSMUSG00000002257	Def6	2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6	differentially expressed in FDCP 6	protein-coding	0.0	0.5	0.0	0.0	0.5	0.0
Merged-chr16-30974734-4	chr16	30974237	30975237	+	969.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 3 of 3)	L1MA9|LINE|L1	106695.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	33.5	56.5	50.5	38.0	81.5	48.5
Merged-chr11-78165571-4	chr11	78165062	78166062	+	969.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009423)	promoter-TSS (NM_009423)	-12.0	NM_009423	22032.0	Mm.390418	NM_009423	ENSMUSG00000017386	Traf4	A530032M13Rik|CART1|msp2	TNF receptor associated factor 4	protein-coding	1.5	1.0	0.5	1.5	3.0	0.0
Merged-chr7-31097796-4	chr7	31097286	31098286	+	969.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001276269)	TTS (NM_001276269)	13211.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	5.0	0.5	6.0	0.0	6.0	3.5
Merged-chr12-79072721-4	chr12	79072214	79073214	+	969.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181073, intron 20 of 28)	intron (NM_181073, intron 20 of 28)	16956.0	NM_029988	110417.0	Mm.268317	NM_029988	ENSMUSG00000021120	Pigh	2210416H01Rik|A930028P05Rik	phosphatidylinositol glycan anchor biosynthesis, class H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19747496-4	chr7	19746981	19747981	+	969.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008990, intron 1 of 8)	intron (NM_008990, intron 1 of 8)	2092.0	NM_008990	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-38718293-4	chr9	38717790	38718790	+	969.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172767)	promoter-TSS (NM_172767)	22.0	NM_172767	67776.0	Mm.290950	NM_172767	ENSMUSG00000023186	Vwa5a	5830475I06Rik|AW552491|BCSC-1|E130119J22|Loh11cr2a	von Willebrand factor A domain containing 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121334743-4	chr10	121334275	121335275	+	969.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361015, intron 2 of 12)	intron (NM_001361015, intron 2 of 12)	16869.0	NM_001361015	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101848090-4	chr7	101847584	101848584	+	969.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303239, intron 2 of 5)	ORR1B1|LTR|ERVL-MaLR	-2753.0	NM_008035	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50939160-4	chr14	50938667	50939667	+	969.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12B|LTR|ERVK	-5136.0	NM_013632	18950.0	Mm.17932	NM_013632	ENSMUSG00000115338	Pnp	AL024301|AU015798|Np|Np-1|Np-2|Pnp1	purine-nucleoside phosphorylase	protein-coding	8.0	30.0	25.5	25.5	52.5	29.5
Merged-chr17-6948564-5	chr17	6948029	6949029	+	969.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083945)	promoter-TSS (NM_001083945)	-173.0	NM_001083945	100037282.0	Mm.29830	NM_001083945	ENSMUSG00000023806	Rsph3b	Rshl2b	radial spoke 3B homolog (Chlamydomonas)	protein-coding	4.5	15.0	8.0	0.5	4.5	1.5
Merged-chr12-87262867-4	chr12	87262371	87263371	+	969.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142581, intron 2 of 18)	MTD|LTR|ERVL-MaLR	1373.0	NM_134044	104799.0	Mm.208750	NM_134044	ENSMUSG00000021038	Vipas39	6720456H09Rik|9330175H22Rik|AI413782|SPE-39|Spe39|Vipar|hSPE-39	VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45241151-2	chr7	45240651	45241651	+	969.589294	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001324535, exon 1 of 13)	5' UTR (NM_001324535, exon 1 of 13)	398.0	NM_001324535	381884.0	Mm.490944	NM_001324535	ENSMUSG00000094152	Slc6a16	Gm1084	solute carrier family 6, member 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38190694-4	chr18	38190184	38191184	+	969.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19078.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64941761-4	chr17	64941272	64942272	+	969.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-105701.0	NM_030031	78057.0	Mm.109380	NM_030031	ENSMUSG00000024088	4930583I09Rik	-	RIKEN cDNA 4930583I09 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53253942-2	chr18	53253442	53254442	+	969.5833130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	8280.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-28417706-4	chr13	28417205	28418205	+	969.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	275221.0	NM_023746	28078.0	Mm.155058	NM_023746	ENSMUSG00000017064	Prl5a1	1600013P04Rik|D13Wsu14e|Ghd24|PLP-L|Prlpl	prolactin family 5, subfamily a, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31387423-2	chr14	31386923	31387923	+	969.5714109999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 3 of 7)	intron (NM_001347585, intron 3 of 7)	30254.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45984588-4	chr19	45984082	45985082	+	969.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198296, intron 1 of 25)	MTC|LTR|ERVL-MaLR	-13555.0	NR_152221	100174921.0	Mm.487206	NR_152221		4930505N22Rik	-	RIKEN cDNA 4930505N22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69257991-4	chr11	69257486	69258486	+	969.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20964.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84706915-4	chr8	84706434	84707434	+	969.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081981, exon 11 of 11)	3' UTR (NM_001081981, exon 11 of 11)	5477.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	10.5	34.5	13.0	34.5	28.0	9.5
Merged-chr11-69401387-4	chr11	69400898	69401898	+	969.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017426, intron 17 of 22)	intron (NM_001017426, intron 17 of 22)	-3164.0	NM_025915	67020.0	Mm.390406	NM_025915	ENSMUSG00000045377	Tmem88	2600017H02Rik	transmembrane protein 88	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71487858-4	chr8	71487357	71488357	+	969.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_032544)	promoter-TSS (NM_032544)	-246.0	NM_032544	70359.0	Mm.142112	NM_032544	ENSMUSG00000007610	Gtpbp3	2410009F13Rik|AI607903	GTP binding protein 3	protein-coding	12.0	45.5	23.5	21.0	27.0	35.5
Merged-chr9-113780256-4	chr9	113779766	113780766	+	969.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114347, intron 6 of 39)	Lx9|LINE|L1	-13064.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-61415423-4	chr3	61414899	61415899	+	969.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50892.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184048862-4	chr1	184048361	184049361	+	969.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022019, intron 2 of 3)	intron (NM_022019, intron 2 of 3)	14480.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-107500673-2	chr1	107500173	107501173	+	969.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-10750.0	NM_001174170	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-129524038-2	chr7	129523538	129524538	+	969.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67825.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23438680-2	chr13	23438180	23439180	+	969.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7663.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91487075-2	chr2	91486575	91487575	+	969.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172668, exon 19 of 38)	exon (NM_172668, exon 19 of 38)	29544.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34761163-2	chr5	34760663	34761663	+	969.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010414)	promoter-TSS (NM_010414)	-577.0	NM_010414	15194.0	Mm.209071	NM_010414	ENSMUSG00000029104	Htt	AI256365|C430023I11Rik|Hd|Hdh|IT15	huntingtin	protein-coding	0.0	18.5	10.5	9.0	11.0	1.5
Merged-chr16-36654114-2	chr16	36653614	36654614	+	969.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	11963.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74535788-2	chr15	74535288	74536288	+	969.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359759, intron 2 of 30)	intron (NM_001359759, intron 2 of 30)	19592.0	NM_001359759	107831.0	Mm.43133	NM_174991	ENSMUSG00000034730	Adgrb1	B830018M07Rik|Bai1|R75078|mKIAA4089	adhesion G protein-coupled receptor B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106154213-2	chr8	106153713	106154713	+	969.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357319, intron 1 of 5)	B1_Mus1|SINE|Alu	3859.0	NM_001357319	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83732457-2	chr8	83732006	83733006	+	969.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 4 of 19)	B1_Mur2|SINE|Alu	-8522.0	NR_106188	102465897.0		NR_106188	ENSMUSG00000098465	Mir1668	Gm27590|mmu-mir-1668	microRNA 1668	ncRNA	19.0	19.5	8.5	4.5	6.0	10.0
Merged-chr4-139236241-4	chr4	139235710	139236710	+	969.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	42099.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	50.5	143.5	124.5	42.0	77.5	60.5
Merged-chr14-76331403-2	chr14	76330903	76331903	+	969.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	79941.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5496979-2	chr19	5496479	5497479	+	969.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362042, intron 9 of 11)	intron (NM_001362042, intron 9 of 11)	6524.0	NM_007687	12631.0	Mm.329655	NM_007687	ENSMUSG00000056201	Cfl1	AA959946|Cof	cofilin 1, non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11711318-2	chr11	11710818	11711818	+	969.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301865, intron 3 of 6)	CT-rich|Low_complexity|Low_complexity	21141.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102456114-2	chr15	102455614	102456614	+	969.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3056.0	NM_001170911	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102023218-2	chr7	102022718	102023718	+	969.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 8 of 8)	intron (NM_029211, intron 8 of 8)	-5063.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90271676-4	chr9	90271194	90272194	+	969.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194334)	promoter-TSS (NM_194334)	-925.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	13.0	61.5	27.0	37.5	40.0	39.0
Merged-chr8-13624968-3	chr8	13624461	13625461	+	969.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 2 of 23)	intron (NM_009025, intron 2 of 23)	52626.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90455051-2	chr2	90454551	90455551	+	969.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 11 of 23)	ORR1D1|LTR|ERVL-MaLR	24123.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91396811-2	chr16	91396339	91397339	+	969.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 7 of 7)	intron (NM_001347258, intron 7 of 7)	-9396.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-65262451-4	chr14	65261950	65262950	+	969.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021458)	promoter-TSS (NM_021458)	13.0	NM_021458	14365.0	Mm.214687	NM_021458	ENSMUSG00000007989	Fzd3	AU020229|D930050A07Rik|Fz3	frizzled class receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-172444436-2	chr2	172443936	172444936	+	969.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025542, intron 1 of 8)	ORR1E|LTR|ERVL-MaLR	3858.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70239346-3	chr9	70238841	70239841	+	969.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	31991.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-159201424-4	chr1	159200902	159201902	+	969.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-30798.0	NM_001360878	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	52.0	90.0	28.0	9.5	18.0	15.5
Merged-chr19-44406972-2	chr19	44406472	44407472	+	969.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009127, intron 1 of 5)	URR1B|DNA|hAT-Charlie	737.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-89485118-2	chr10	89484618	89485618	+	969.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009108, intron 2 of 8)	intron (NM_009108, intron 2 of 8)	21540.0	NM_001163700	20186.0	Mm.3095	NM_009108	ENSMUSG00000047638	Nr1h4	AI957360|Fxr|HRR1|RIP14|Rxrip14	nuclear receptor subfamily 1, group H, member 4	protein-coding	0.0	0.0	4.5	1.0	7.0	0.0
Merged-chr7-45097684-4	chr7	45097203	45098203	+	969.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357117, intron 4 of 6)	intron (NM_001357117, intron 4 of 6)	-5490.0	NM_001355045	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	34.5	52.0	45.0	23.5	52.0	54.5
Merged-chr17-28258777-2	chr17	28258277	28259277	+	969.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 2 of 7)	intron (NM_011145, intron 2 of 7)	-12931.0	NR_045427	69050.0	Mm.486938	NR_045427	ENSMUSG00000002250	1810013A23Rik	-	RIKEN cDNA 1810013A23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-48834747-2	chr16	48834247	48835247	+	969.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-7805.0	NM_020509	57262.0	Mm.441868	NM_020509	ENSMUSG00000061100	Retnla	1810019L16Rik|Fizz-1|Fizz1|HIMF|RELM-alpha|RELMa|RELMalpha|Xcp2	resistin like alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24651332-4	chr10	24650793	24651793	+	969.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008813, exon 20 of 25)	exon (NM_008813, exon 20 of 25)	55851.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	13.5	50.0	22.5	30.0	66.5	50.0
Merged-chr5-65561294-4	chr5	65560812	65561812	+	969.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310618, intron 1 of 4)	RLTR26_Mus|LTR|ERVK	24067.0	NM_001310619	53323.0	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55494865-2	chr12	55494365	55495365	+	969.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2218.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43873347-2	chr7	43872847	43873847	+	969.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7825.0	NM_019928	56640.0	Mm.42080	NM_019928	ENSMUSG00000006948	Klk4	ESMP1|KLK-L1|PSTS|Prss17	kallikrein related-peptidase 4 (prostase, enamel matrix, prostate)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72153607-4	chr6	72153114	72154114	+	969.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011375, exon 7 of 7)	exon (NM_011375, exon 7 of 7)	-30417.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120086332-2	chr11	120085832	120086832	+	969.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009734, intron 1 of 25)	intron (NM_009734, intron 1 of 25)	495.0	NM_009734	12009.0	Mm.2556	NM_009734	ENSMUSG00000039781	Cep131	AZ1|Azi|Azi1	centrosomal protein 131	protein-coding	8.5	2.0	2.0	0.0	1.0	2.0
Merged-chr14-64637589-4	chr14	64637097	64638097	+	969.4874880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14934.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34805140-6	chr8	34804514	34805514	+	969.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2596.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	1.5	8.5	7.5	0.5	7.5	8.5
Merged-chr4-116627972-4	chr4	116627473	116628473	+	969.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016777)	promoter-TSS (NM_016777)	-22.0	NM_016777	50927.0	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109271973-4	chr4	109271477	109272477	+	969.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8298.0	NM_007943	13858.0	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	0.0	3.0	1.5	1.5	0.0	8.5
Merged-chr4-41773684-4	chr4	41773188	41774188	+	969.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_154591, intron 2 of 4)	CpG-9830	413.0	NM_001361246	20301.0	Mm.335946	NM_011336	ENSMUSG00000073888	Ccl27a	ALP|AW558992|CTACK|CTAK|Ccl27|ESkine|ILC|PESKY|Scya27|Scya27a	chemokine (C-C motif) ligand 27A	protein-coding	10.5	26.0	1.5	0.0	0.0	0.0
Merged-chr4-102944518-3	chr4	102944008	102945008	+	969.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285859, intron 17 of 23)	intron (NM_001285859, intron 17 of 23)	-41871.0	NM_001163767	67344.0	Mm.111346	NM_026100	ENSMUSG00000028523	Tctex1d1	1700055O19Rik	Tctex1 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128428254-4	chr2	128427754	128428754	+	969.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	1097.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	78.5	222.0	204.5	62.0	132.0	129.0
Merged-chr11-94031450-4	chr11	94030953	94031953	+	969.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027569, intron 2 of 28)	intron (NM_027569, intron 2 of 28)	-12752.0	NM_001025430	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	26.5	60.0	19.5	10.0	51.0	38.0
Merged-chr2-158028455-7	chr2	158027985	158028985	+	969.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291136)	promoter-TSS (NM_001291136)	-12.0	NM_001291134	70470.0	Mm.290810	NM_027434	ENSMUSG00000027651	Rprd1b	2610304G08Rik|2810446G03Rik|Crept	regulation of nuclear pre-mRNA domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-76691004-4	chr2	76690507	76691507	+	969.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031256, intron 6 of 7)	intron (NM_031256, intron 6 of 7)	15692.0	NM_031256	83435.0	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88578804-4	chr10	88578318	88579318	+	969.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252372, intron 2 of 28)	intron (NM_001252372, intron 2 of 28)	26334.0	NM_001252372	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-39230956-3	chr12	39230455	39231455	+	969.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	447244.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	6.0	5.0	2.0	6.0	3.0	1.0
Merged-chr6-120152998-4	chr6	120152569	120153569	+	969.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	B1_Mm|SINE|Alu	-40754.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-150176797-3	chr5	150176296	150177296	+	969.4166869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83134.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	7.0	9.0	7.5	0.0	0.0	1.0
Merged-chr1-171817163-4	chr1	171816665	171817665	+	969.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22532.0	NM_001252472	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	21.5	26.0	31.0	13.5	39.5	43.0
Merged-chr2-49554948-4	chr2	49554384	49555384	+	969.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64430.0	NM_008449	16574.0	Mm.256342	NM_008449	ENSMUSG00000026764	Kif5c	KINN|Khc|NKHC|NKHC2	kinesin family member 5C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91763984-3	chr12	91763489	91764489	+	969.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	B1_Mur3|SINE|Alu	22447.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31081187-3	chr17	31080678	31081678	+	969.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	23484.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	11.0	19.5	16.0	3.0	15.0	13.5
Merged-chr3-14381780-3	chr3	14381282	14382282	+	969.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18665.0	NR_033591	622229.0	Mm.486084	NR_033591		Gm6300	EG622229	solute carrier family 7 (cationic amino acid transporter, y+ system), member pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25357941-4	chr2	25357442	25358442	+	969.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1610.0	NM_031843	83768.0	Mm.21440	NM_031843	ENSMUSG00000026958	Dpp7	DPPII|Dpp2|QPP	dipeptidylpeptidase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3191777-16	chr11	3191252	3192252	+	969.3797609999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 1 of 32)	RCHARR1|DNA|hAT-Charlie	1711.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-14725199-4	chr9	14724661	14725661	+	969.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177905, intron 8 of 18)	intron (NM_177905, intron 8 of 18)	15572.0	NM_177905	330890.0	Mm.334969	NM_177905	ENSMUSG00000036912	Piwil4	9230101H05Rik|Miwi2	piwi-like RNA-mediated gene silencing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29318888-4	chr11	29318386	29319386	+	969.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	-55286.0	NM_176841	108686.0	Mm.338284	NM_176841	ENSMUSG00000032740	Ccdc88a	A430106J12Rik|AI848406|Ape|C130096N06Rik|C330012F17Rik|D130005J21Rik|Girdin|Giv|Grdn|Hkrp1	coiled coil domain containing 88A	protein-coding	2.0	2.0	4.5	5.0	1.0	8.0
Merged-chr7-58686805-4	chr7	58686297	58687297	+	969.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009728, intron 1 of 20)	MTD|LTR|ERVL-MaLR	28595.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	11.0	9.0	14.5	0.0	4.5	11.5
Merged-chr10-51414746-4	chr10	51414255	51415255	+	969.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65857.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101882472-4	chr7	101881990	101882990	+	969.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291353, intron 1 of 5)	intron (NM_001291353, intron 1 of 5)	1165.0	NM_001291353	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-131975328-4	chr4	131974828	131975828	+	969.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 10 of 20)	intron (NM_183428, intron 10 of 20)	53557.0	NM_001201367	623230.0	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50560976-2	chr6	50560476	50561476	+	969.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5498.0	NM_007808	13063.0	Mm.35389	NM_007808	ENSMUSG00000063694	Cycs	-	cytochrome c, somatic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54039549-3	chr6	54039065	54040065	+	969.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163640)	promoter-TSS (NM_001163640)	-367.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41437586-3	chr13	41437089	41438089	+	969.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	49771.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150915444-3	chr4	150914956	150915956	+	969.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4699.0	NM_011612	21942.0	Mm.244187	NM_011612	ENSMUSG00000028965	Tnfrsf9	4-1BB|A930040I11Rik|AA408498|AI325004|CDw137|Cd137|ILA|Ly63	tumor necrosis factor receptor superfamily, member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99965798-4	chr12	99965324	99966324	+	969.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_146037, exon 2 of 3)	5' UTR (NM_146037, exon 2 of 3)	1325.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94667098-1	chr8	94666598	94667598	+	969.3333130000001	f0_balb.idr	promoter-TSS (NM_024269)	promoter-TSS (NM_024269)	7.0	NM_024269	107566.0	Mm.393247	NM_024191	ENSMUSG00000031776	Arl2bp	1700010P10Rik|1700027H16Rik|6330544B05Rik|AI482273|AI849834|BART|Bart1	ADP-ribosylation factor-like 2 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72184649-1	chr5	72184149	72185149	+	969.3333130000001	f0_balb.idr	Intergenic	Intergenic	-16460.0	NM_001356614	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32754893-4	chr19	32754408	32755408	+	969.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2669.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60281848-2	chr10	60281348	60282348	+	969.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_011179, intron 1 of 14)	intron (NM_011179, intron 1 of 14)	-2613.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132261595-4	chr4	132261103	132262103	+	969.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020273)	promoter-TSS (NM_020273)	-54.0	NM_001122992	56809.0	Mm.103489	NM_020273	ENSMUSG00000028901	Gmeb1	1110050A04Rik|AI256615|AI481278	glucocorticoid modulatory element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97925019-4	chr15	97924540	97925540	+	969.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16744.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70020896-4	chr11	70020394	70021394	+	969.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007864, intron 1 of 19)	intron (NM_007864, intron 1 of 19)	2289.0	NM_007864	13385.0	Mm.27256	NM_007864	ENSMUSG00000020886	Dlg4	Dlgh4|PSD-95|PSD95|SAP90|SAP90A	discs large MAGUK scaffold protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38290458-4	chr2	38289958	38290958	+	969.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-3074.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132713674-4	chr7	132713222	132714222	+	969.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175268, exon 5 of 5)	3' UTR (NM_175268, exon 5 of 5)	63194.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40587207-4	chr19	40586697	40587697	+	969.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153554, intron 1 of 18)	intron (NM_153554, intron 1 of 18)	1266.0	NM_019698	56454.0	Mm.233117	NM_019698	ENSMUSG00000025007	Aldh18a1	2810433K04Rik|AI429789|Pycs	aldehyde dehydrogenase 18 family, member A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-105990435-4	chr11	105989951	105990951	+	969.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_207624)	TTS (NM_207624)	-4224.0	NM_001101453	217246.0	Mm.296699	NM_001101453	ENSMUSG00000101605	Ace3	EG217246	angiotensin I converting enzyme (peptidyl-dipeptidase A) 3	protein-coding	10.0	11.0	6.0	10.0	11.0	4.0
Merged-chr17-88517749-4	chr17	88517243	88518243	+	969.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-12381.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61384308-4	chr18	61383822	61384822	+	969.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133249, intron 1 of 11)	intron (NM_133249, intron 1 of 11)	13578.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	16.0	52.5	36.5	12.0	75.0	35.5
Merged-chr6-43645352-3	chr6	43644848	43645848	+	969.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 2 of 8)	intron (NM_013861, intron 2 of 8)	20930.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84228717-4	chr3	84228219	84229219	+	969.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271726, intron 1 of 11)	intron (NM_001271726, intron 1 of 11)	-7842.0	NM_030706	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	7.0	17.5	17.5	5.5	19.5	12.0
Merged-chr11-51677938-4	chr11	51677445	51678445	+	969.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	10689.0	NM_025319	66050.0	Mm.35693	NM_025319	ENSMUSG00000007777	0610009B22Rik	-	RIKEN cDNA 0610009B22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125380768-2	chr6	125380268	125381268	+	969.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198604)	promoter-TSS (NM_198604)	-264.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr10-84163928-4	chr10	84163420	84164420	+	969.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63223.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35048560-4	chr17	35048043	35049043	+	969.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1700.0	NM_033444	114584.0	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	33.5	72.5	30.0	26.0	73.5	49.0
Merged-chr9-45301315-2	chr9	45300815	45301815	+	969.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17785.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7347353-4	chr9	7346828	7347828	+	969.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001320076)	promoter-TSS (NM_001320076)	-46.0	NM_001320076	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-106016829-3	chr12	106016325	106017325	+	969.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029843, intron 1 of 13)	intron (NM_001029843, intron 1 of 13)	6562.0	NM_001029843	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113690615-4	chr6	113690117	113691117	+	969.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 10 of 11)	RLTR35B_MM|LTR|ERVL	-6433.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89858347-4	chr3	89857848	89858848	+	969.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172530, exon 6 of 6)	3' UTR (NM_172530, exon 6 of 6)	26978.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117990172-4	chr11	117989674	117990674	+	969.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151726, intron 1 of 9)	intron (NR_151726, intron 1 of 9)	3317.0	NR_151726	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81212407-4	chr7	81211887	81212887	+	969.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1417.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	4.0	12.5	11.5	4.0	12.5	12.0
Merged-chr14-25473704-3	chr14	25473248	25474248	+	969.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	14563.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67372296-3	chr7	67371789	67372789	+	969.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 1 of 11)	CpG	569.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-5115278-3	chr5	5114771	5115771	+	969.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 6 of 14)	intron (NM_011074, intron 6 of 14)	150797.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.0	7.0	1.0	0.0	0.0	0.0
Merged-chr8-71668815-3	chr8	71668304	71669304	+	969.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 1 of 41)	intron (NM_001029873, intron 1 of 41)	2953.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	2.0	3.0	0.0	0.0	0.0	0.0
Merged-chr6-42310845-4	chr6	42310329	42311329	+	969.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013491, intron 18 of 22)	intron (NM_013491, intron 18 of 22)	13811.0	NM_001286584	76156.0	Mm.234314	NM_029528	ENSMUSG00000029861	Fam131b	6330503C03Rik|6530406I18Rik|AV277466	family with sequence similarity 131, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-15848577-4	chr3	15848056	15849056	+	969.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001173459)	promoter-TSS (NM_001173459)	-69.0	NM_001173459	100038947.0	Mm.330924	NM_001173459	ENSMUSG00000074677	LOC100038947	-	signal-regulatory protein beta 1-like	protein-coding	13.0	18.0	45.0	10.5	17.0	11.5
Merged-chr17-57219284-4	chr17	57218719	57219719	+	969.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009778, intron 19 of 40)	B4A|SINE|B4	-1991.0	NR_105944	102465591.0		NR_105944	ENSMUSG00000099066	Mir6978	Gm27858|mmu-mir-6978	microRNA 6978	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146784424-4	chr3	146783922	146784922	+	969.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011100, intron 1 of 9)	intron (NM_011100, intron 1 of 9)	-3006.0	NM_001164200	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67644415-4	chr10	67643901	67644901	+	969.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72442.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-123354541-4	chr7	123354025	123355025	+	969.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	15390.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91685967-5	chr6	91685373	91686373	+	969.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 1 of 14)	MIRb|SINE|MIR	1806.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-97478836-4	chr16	97478347	97479347	+	969.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020622, intron 3 of 7)	intron (NM_020622, intron 3 of 7)	-15941.0	NR_003520	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83418281-4	chr6	83417757	83418757	+	969.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347313, intron 3 of 11)	intron (NM_001347313, intron 3 of 11)	-17155.0	NR_105793	102465194.0		NR_105793	ENSMUSG00000099045	Mir6374	Gm27292|mmu-mir-6374	microRNA 6374	ncRNA	13.5	27.0	26.5	5.0	14.5	10.5
Merged-chr6-65590346-4	chr6	65589869	65590869	+	969.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001495)	promoter-TSS (NM_001001495)	-29.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73622068-4	chr15	73621568	73622568	+	969.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033219, intron 1 of 7)	A-rich|Low_complexity|Low_complexity	2676.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65484127-4	chr5	65483610	65484610	+	969.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133697, intron 1 of 4)	MLT-int|LTR|ERVL-MaLR	8725.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4492718-4	chr2	4492230	4493230	+	969.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 4 of 23)	intron (NM_001177843, intron 4 of 23)	-67024.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88292363-2	chr1	88291863	88292863	+	969.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-14349.0	NM_134252	171382.0	Mm.218753	NM_134252	ENSMUSG00000036251	Trpm8	CMR1|LTRPC6|LTrpC-6|TRPP8|Trp-p8	transient receptor potential cation channel, subfamily M, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-16738116-3	chr6	16737604	16738604	+	969.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	160337.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120352807-4	chr11	120352274	120353274	+	969.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4096.0	NR_038126	66838.0	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112278504-2	chr5	112278004	112279004	+	969.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	ID_B1|SINE|B4	1813.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155972514-4	chr1	155972082	155973082	+	969.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039184, intron 1 of 37)	intron (NM_001039184, intron 1 of 37)	673.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	8.5	38.0	20.5	2.0	26.5	20.0
Merged-chr8-13666116-3	chr8	13665619	13666619	+	969.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	11468.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-17896211-4	chr2	17895717	17896717	+	969.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	100741.0	NM_026627	68231.0	Mm.23887	NM_026627	ENSMUSG00000062651	H2al2a	1700113O17Rik|H2A.Bbd|H2A.L.2|H2afb1|H2al2|TSEG-1|Tseg1	H2A histone family member L2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145229307-4	chr4	145228817	145229817	+	969.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	17553.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-127439944-4	chr8	127439488	127440488	+	969.125	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033620, intron 20 of 24)	intron (NM_033620, intron 20 of 24)	140336.0	NM_001013580	93742.0	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	27.0	30.5	38.0	0.0	4.0	0.0
Merged-chr13-21735494-4	chr13	21735002	21736002	+	969.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178210)	TTS (NM_178210)	468.0	NM_178210	319159.0		NM_178210	ENSMUSG00000067455	Hist1h4j	-	histone cluster 1, H4j	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-115848211-4	chr4	115847680	115848680	+	969.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285487, intron 2 of 14)	intron (NM_001285487, intron 2 of 14)	8982.0	NM_001355174	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	6.0	27.5	24.0	18.5	73.5	31.0
Merged-chr7-139219265-4	chr7	139218768	139219768	+	969.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001143755, intron 4 of 8)	intron (NM_001143755, intron 4 of 8)	-5961.0	NM_001162540	57740.0	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	30.5	42.0	44.5	38.0	40.5	44.0
Merged-chr1-172512422-2	chr1	172511925	172512925	+	969.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8705.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	7.0	18.5	23.0	1.5	5.0	7.0
Merged-chr17-53584105-4	chr17	53583610	53584610	+	969.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190846)	promoter-TSS (NM_001190846)	-16.0	NM_001190846	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129594883-4	chr2	129594515	129595515	+	969.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355160)	promoter-TSS (NM_001355160)	-447.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	362.5	805.0	656.0	291.0	831.5	449.0
Merged-chr1-167393822-4	chr1	167393304	167394304	+	969.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025569)	promoter-TSS (NM_025569)	-7.0	NM_025569	66447.0	Mm.218286	NM_025569	ENSMUSG00000026688	Mgst3	2010012L10Rik|2010306B17Rik|2700004G04Rik|AA516734|GST-III	microsomal glutathione S-transferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35442283-4	chr2	35441779	35442779	+	969.087524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	19170.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132602005-4	chr2	132601506	132602506	+	969.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033469, intron 1 of 3)	intron (NR_033469, intron 1 of 3)	3810.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55730343-4	chr14	55729837	55730837	+	969.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8074.0	NM_001360387	56187.0	Mm.87216	NM_019519	ENSMUSG00000040472	Rabggta	gm	Rab geranylgeranyl transferase, a subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20741047-4	chr18	20740552	20741552	+	969.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	5352.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-78580232-4	chr2	78579722	78580722	+	969.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-288825.0	NM_009454	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27977395-3	chr17	27976953	27977953	+	969.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286041, intron 3 of 23)	intron (NM_001286041, intron 3 of 23)	68147.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	0.0	0.0	0.0	0.5	0.0	2.5
Merged-chr6-47979145-4	chr6	47978650	47979650	+	969.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25760.0	NM_178898	101197.0	Mm.241063	NM_178898	ENSMUSG00000045466	Zfp956	AI894139	zinc finger protein 956	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111557740-4	chr12	111557251	111558251	+	969.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16651.0	NR_045295	100504687.0	Mm.26072	NR_045295	ENSMUSG00000096995	2810029C07Rik	AU017849	RIKEN cDNA 2810029C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-28777983-4	chr19	28777504	28778504	+	969.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-57162.0	NM_009199	20510.0	Mm.246670	NM_009199	ENSMUSG00000024935	Slc1a1	D130048G10Rik|EAAC1|EAAC2|EAAT3|MEAAC1	solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119034401-4	chr11	119033915	119034915	+	969.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	6498.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-47032550-4	chr11	47032078	47033078	+	969.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 6 of 7)	L2|LINE|L2	221779.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	0.0	8.5	13.5	3.0	6.0	6.0
Merged-chr18-80739084-4	chr18	80738579	80739579	+	969.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015805, intron 27 of 28)	intron (NM_015805, intron 27 of 28)	-26008.0	NM_001164110	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8980496-2	chr3	8979996	8980996	+	969.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-16350.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	13.0	9.5	7.0	9.5	11.5	13.0
Merged-chr6-88522392-2	chr6	88521892	88522892	+	969.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-3592.0	NM_016906	53421.0	Mm.28375	NM_016906	ENSMUSG00000030082	Sec61a1	AA408394|AA410007|Sec61a	Sec61 alpha 1 subunit (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-6280995-3	chr6	6280527	6281527	+	969.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_136906, exon 3 of 3)	non-coding (NR_136906, exon 3 of 3)	32368.0	NR_136905	101056138.0	Mm.389085	NR_136904	ENSMUSG00000093482	Gm20619	-	predicted gene 20619	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140640464-2	chr5	140639964	140640964	+	969.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308040, intron 1 of 12)	MTC|LTR|ERVL-MaLR	8567.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-35836247-2	chr11	35835747	35836747	+	969.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1719.0	NM_025936	104458.0	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139456425-2	chr7	139455925	139456925	+	969.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183144, intron 2 of 15)	intron (NM_183144, intron 2 of 15)	55931.0	NM_001355162	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72347584-6	chr6	72347069	72348069	+	969.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026696, intron 1 of 3)	CpG	252.0	NM_026696	68364.0	Mm.52711	NM_026696	ENSMUSG00000058706	0610030E20Rik	1500031N04Rik|2810411C16Rik|AI461894	RIKEN cDNA 0610030E20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108592203-2	chr8	108591703	108592703	+	969.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7526.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119023300-2	chr11	119022800	119023800	+	969.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007623, exon 2 of 5)	exon (NM_007623, exon 2 of 5)	279.0	NM_007623	12416.0	Mm.14547	NM_007623	ENSMUSG00000025577	Cbx2	M33|MOD2|pc	chromobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8705104-4	chr15	8704600	8705600	+	969.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148938, intron 2 of 9)	intron (NM_148938, intron 2 of 9)	5707.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-16083314-3	chr4	16082820	16083820	+	969.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69432.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62339526-4	chr10	62339011	62340011	+	969.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010438, intron 4 of 21)	intron (NM_010438, intron 4 of 21)	910.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34238914-3	chr17	34238435	34239435	+	969.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010389)	promoter-TSS (NM_010389)	30.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	52.5	103.5	35.0	14.0	27.5	17.5
Merged-chr9-20879670-2	chr9	20879170	20880170	+	969.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145154)	promoter-TSS (NM_145154)	40.0	NM_145154	70726.0	Mm.34019	NM_145154	ENSMUSG00000038742	Angptl6	6330404E11Rik|AGF|ARP3|Arp5	angiopoietin-like 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110609576-2	chr9	110609076	110610076	+	969.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081340, intron 18 of 20)	RLTR49|LTR|ERVK	14817.0	NM_026012	67169.0	Mm.46680	NM_026012	ENSMUSG00000032491	Nradd	2610311B09Rik|BB104149|NRDD|NRH2|PLAIDD	neurotrophin receptor associated death domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61753921-2	chr9	61753421	61754421	+	969.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	160589.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11733366-2	chr2	11732866	11733866	+	969.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_073192, exon 5 of 5)	non-coding (NR_073192, exon 5 of 5)	27654.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-136674196-2	chr3	136673696	136674696	+	969.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	4130.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55452275-3	chr11	55451776	55452776	+	969.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 2 of 3)	intron (NM_009720, intron 2 of 3)	8932.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155819950-2	chr2	155819450	155820450	+	969.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015528)	promoter-TSS (NR_015528)	-747.0	NR_015528	613262.0	Mm.330707	NR_015528	ENSMUSG00000074649	BC029722	-	cDNA sequence BC029722	ncRNA	64.5	172.5	137.0	52.0	101.0	92.5
Merged-chr2-4651726-2	chr2	4651226	4652226	+	969.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026045, intron 1 of 9)	intron (NM_026045, intron 1 of 9)	409.0	NM_026045	67229.0	Mm.38529	NM_026045	ENSMUSG00000039449	Prpf18	2810441A10Rik	pre-mRNA processing factor 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99376600-2	chr5	99376100	99377100	+	969.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	MIRb|SINE|MIR	-123673.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9874175-4	chr13	9873674	9874674	+	969.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108853.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110590241-2	chr7	110589741	110590741	+	969.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 1 of 40)	intron (NM_177324, intron 1 of 40)	24679.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-140767858-4	chr6	140767360	140768360	+	969.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	140975.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9094822-1	chr13	9094322	9095322	+	969.0	f0_balb.idr	intron (NM_172585, intron 1 of 17)	intron (NM_172585, intron 1 of 17)	941.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85390512-2	chr12	85390012	85391012	+	969.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-15795.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154940769-2	chr4	154940271	154941271	+	969.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-12694.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	0.0	0.0	1.0	1.0	10.5	9.5
Merged-chr16-31944786-2	chr16	31944286	31945286	+	969.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172822, exon 3 of 3)	exon (NM_172822, exon 3 of 3)	3735.0	NR_027897	106264.0	Mm.347369	NM_025320	ENSMUSG00000107002	0610012G03Rik	AI839730	RIKEN cDNA 0610012G03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26964070-4	chr8	26963587	26964587	+	969.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-13249.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99981938-2	chr7	99981438	99982438	+	969.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1480.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112016197-2	chr13	112015697	112016697	+	969.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME3|LINE|L1	148261.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-121986685-2	chr7	121986185	121987185	+	969.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028758)	TTS (NM_028758)	-4992.0	NM_001033318	233824.0	Mm.442015	NM_001033318	ENSMUSG00000034951	Cog7	5630400E24Rik|Gm167	component of oligomeric golgi complex 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41974261-4	chr19	41973773	41974773	+	969.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028152, intron 1 of 30)	intron (NM_028152, intron 1 of 30)	6863.0	NM_028152	72199.0	Mm.218940	NM_028152	ENSMUSG00000025159	Mms19	2410001K24Rik|2610042O15Rik|AI316855|C79368|C86341|Mms19l	MMS19 (MET18 S. cerevisiae)	protein-coding	37.5	63.0	51.5	37.0	77.0	27.5
Merged-chr16-75426620-2	chr16	75426120	75427120	+	969.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31_Mur|LTR|ERVK	159441.0	NM_001252513	320355.0	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-53690143-4	chr17	53689656	53690656	+	968.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028232)	promoter-TSS (NM_028232)	-841.0	NM_028232	72415.0	Mm.153202	NM_028232	ENSMUSG00000023940	Sgo1	3300001M08Rik|C81037|Sgol1	shugoshin 1	protein-coding	51.0	129.5	107.0	28.0	39.5	41.5
Merged-chr15-84968894-4	chr15	84968381	84969381	+	968.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	-17258.0	NR_037206	100526461.0		NR_037206	ENSMUSG00000080441	Mir1249	mir-1249|mmu-mir-1249	microRNA 1249	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11689095-4	chr11	11688595	11689595	+	968.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025597, intron 1 of 7)	intron (NM_001025597, intron 1 of 7)	-1082.0	NM_001301865	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60978476-4	chr18	60977969	60978969	+	968.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177407, intron 15 of 17)	intron (NM_177407, intron 15 of 17)	14915.0	NM_001286809	12322.0	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59449961-4	chr11	59449434	59450434	+	968.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037992)	promoter-TSS (NR_037992)	100.0	NM_001356454	67826.0	Mm.26680	NM_144521	ENSMUSG00000009894	Snap47	1110031B06Rik|SNAP-47	synaptosomal-associated protein, 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113649600-4	chr6	113649094	113650094	+	968.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	11127.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35546931-4	chr9	35546416	35547416	+	968.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013932, exon 9 of 12)	exon (NM_013932, exon 9 of 12)	11554.0	NM_013932	30959.0	Mm.291723	NM_013932	ENSMUSG00000032101	Ddx25	AW047046|GRTH	DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6029447-4	chr15	6028922	6029922	+	968.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155428, intron 2 of 2)	intron (NR_155428, intron 2 of 2)	15282.0	NR_155428	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97815974-3	chr6	97815502	97816502	+	968.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	8944.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	21.5	48.0	28.0	5.0	22.0	13.0
Merged-chr19-12007844-4	chr19	12007337	12008337	+	968.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	28903.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	1.0	9.0	2.0	1.0	9.0	1.5
Merged-chr2-128967879-4	chr2	128967392	128968392	+	968.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178404, intron 1 of 11)	GC_rich|Low_complexity|Low_complexity	490.0	NM_178404	78751.0	Mm.26377	NM_178404	ENSMUSG00000042851	Zc3h6	4631426G04Rik|4833425H18Rik|AU024389|AW060453|Zc3hdc6|mKIAA2035	zinc finger CCCH type containing 6	protein-coding	0.0	5.5	2.0	0.0	6.0	1.0
Merged-chr11-103005280-4	chr11	103004768	103005768	+	968.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026551, intron 1 of 4)	intron (NM_026551, intron 1 of 4)	-5347.0	NR_105896	102466988.0		NR_105896	ENSMUSG00000098613	Mir6931	Gm27303|mmu-mir-6931	microRNA 6931	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-81538356-4	chr17	81537863	81538863	+	968.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	ORR1E|LTR|ERVL-MaLR	200024.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46806994-4	chr11	46806482	46807482	+	968.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3817.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	0.5	5.5	0.0	1.0	14.5	1.5
Merged-chr15-78931786-4	chr15	78931281	78932281	+	968.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3152.0	NM_133800	97961.0	Mm.157216	NM_133800	ENSMUSG00000033099	Nol12	C78541|Nop25	nucleolar protein 12	protein-coding	5.5	14.0	0.0	6.0	5.0	0.0
Merged-chr14-7972148-4	chr14	7971691	7972691	+	968.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007870, intron 6 of 7)	intron (NM_007870, intron 6 of 7)	21991.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38997264-4	chr18	38996735	38997735	+	968.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 1 of 21)	intron (NM_001361073, intron 1 of 21)	4090.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44837092-4	chr7	44836561	44837561	+	968.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171024, intron 4 of 8)	intron (NM_001171024, intron 4 of 8)	773.0	NM_010215	14204.0	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	0.5	31.5	15.5	5.5	33.5	8.5
Merged-chr16-91358930-2	chr16	91358430	91359430	+	968.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-13853.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-28292863-4	chr6	28292372	28293372	+	968.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31271.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117292380-2	chr8	117291880	117292880	+	968.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	35361.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100395429-4	chr11	100394934	100395934	+	968.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010593, intron 1 of 13)	intron (NM_010593, intron 1 of 13)	2356.0	NM_010593	16480.0	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157368220-2	chr2	157367720	157368720	+	968.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026968, intron 1 of 2)	MER44B|DNA|TcMar-Tigger	626.0	NM_026968	69161.0	Mm.228619	NM_026968	ENSMUSG00000063019	Manbal	1810024K12Rik|AI836500	mannosidase, beta A, lysosomal-like	protein-coding	99.0	219.5	160.5	97.5	149.0	156.0
Merged-chr2-32776283-2	chr2	32775783	32776783	+	968.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290567)	promoter-TSS (NM_001290567)	462.0	NM_178595	329384.0	Mm.268037	NM_178595	ENSMUSG00000053746	Ptrh1	2210013M04Rik|AW046744	peptidyl-tRNA hydrolase 1 homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-19750638-3	chr14	19750135	19751135	+	968.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008695)	promoter-TSS (NM_008695)	-622.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	12.5	21.5	37.0	24.0	64.5	38.5
Merged-chr10-120848922-3	chr10	120848422	120849422	+	968.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177092, intron 4 of 6)	intron (NM_177092, intron 4 of 6)	-8707.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-9101624-3	chr5	9101122	9102122	+	968.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081029, intron 2 of 4)	intron (NM_001081029, intron 2 of 4)	885.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123683846-4	chr5	123683300	123684300	+	968.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359224, intron 1 of 18)	CpG	561.0	NM_019765	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	25.5	51.0	61.0	24.0	34.0	49.0
Merged-chr15-59041809-4	chr15	59041282	59042282	+	968.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	40244.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115634271-4	chr11	115633773	115634773	+	968.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5978.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31803882-4	chr16	31803396	31804396	+	968.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357281, intron 8 of 22)	intron (NM_001357281, intron 8 of 22)	49546.0	NM_001252436	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11843661-4	chr16	11843147	11844147	+	968.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146067, intron 2 of 3)	intron (NM_146067, intron 2 of 3)	-57717.0	NR_033509	791359.0	Mm.227592	NR_033509	ENSMUSG00000055015	Gm9961	-	predicted gene 9961	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-8807349-3	chr5	8806840	8807840	+	968.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011075, intron 4 of 27)	intron (NM_011075, intron 4 of 27)	-8817.0	NR_152132	330031.0	Mm.389059	NR_152132		Gm5106	A230021K14|EG330031	predicted gene 5106	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-21962317-3	chr17	21961790	21962790	+	968.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025373)	promoter-TSS (NM_001025373)	174.0	NM_001199048	73233.0	Mm.311219	NM_001199048	ENSMUSG00000071267	Zfp942	3110048L19Rik	zinc finger protein 942	protein-coding	89.5	205.5	145.0	45.0	110.5	71.0
Merged-chr19-43723624-4	chr19	43723133	43724133	+	968.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053103, intron 9 of 12)	intron (NM_053103, intron 9 of 12)	29367.0	NM_144874	226139.0	Mm.248237	NM_144874	ENSMUSG00000040018	Cox15	2900026G05Rik	cytochrome c oxidase assembly protein 15	protein-coding	6.0	4.0	4.5	0.0	0.0	3.0
Merged-chr4-132514095-4	chr4	132513595	132514595	+	968.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3639.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	5.5	13.0	9.5	9.5	13.0	5.0
Merged-chr7-90023669-3	chr7	90023143	90024143	+	968.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5516.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	97.0	193.0	113.5	75.0	152.0	83.5
Merged-chr6-47757820-5	chr6	47757400	47758400	+	968.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4975.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116202953-4	chr4	116202458	116203458	+	968.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-18458.0	NM_001355585	18710.0	Mm.253819	NM_181585	ENSMUSG00000028698	Pik3r3	AA414954|p55|p55pik	phosphoinositide-3-kinase regulatory subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-65475910-4	chr7	65475425	65476425	+	968.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-104681.0	NM_009386	21872.0	Mm.4342	NM_009386	ENSMUSG00000030516	Tjp1	ZO1	tight junction protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43445888-8	chr1	43445401	43446401	+	968.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010879, exon 1 of 5)	5' UTR (NM_010879, exon 1 of 5)	150.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111426234-4	chr12	111425706	111426706	+	968.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028807, exon 8 of 13)	exon (NM_028807, exon 8 of 13)	8761.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4067295-4	chr7	4066792	4067792	+	968.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4088.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5579597-4	chr2	5579107	5580107	+	968.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	96439.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	9.5	9.5	5.0	6.0	5.5	5.0
Merged-chr2-92058663-4	chr2	92058180	92059180	+	968.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-34510.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137300475-2	chr4	137299975	137300975	+	968.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009523)	TTS (NM_009523)	22840.0	NM_009523	22417.0	Mm.20355	NM_009523	ENSMUSG00000036856	Wnt4	Wnt-4	wingless-type MMTV integration site family, member 4	protein-coding	1.5	1.5	13.5	5.5	4.5	5.5
Merged-chr18-38013935-4	chr18	38013432	38014432	+	968.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14963.0	NM_001205336	106952.0	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51844837-4	chr13	51844314	51845314	+	968.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1861.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-90508519-4	chr18	90508020	90509020	+	968.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAP1-MM_LTR|LTR|ERVK	-1634.0	NM_198295	67988.0	Mm.268041	NM_198295	ENSMUSG00000024614	Tmx3	6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830	thioredoxin-related transmembrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-87839628-4	chr10	87839125	87840125	+	968.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18640.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-93094098-4	chr5	93093567	93094567	+	968.744019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009818, intron 1 of 9)	CpG	651.0	NM_001347377	52398.0	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	11.5	4.5	4.0	6.0	3.5	4.5
Merged-chr8-103970180-3	chr8	103969694	103970694	+	968.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-131431.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41989960-4	chr19	41989477	41990477	+	968.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	ID_B1|SINE|B4	8214.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	3.5	10.5	4.5	0.0	12.5	1.5
Merged-chr2-164075239-4	chr2	164074743	164075743	+	968.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021420, intron 1 of 10)	intron (NM_021420, intron 1 of 10)	1065.0	NM_021420	58231.0	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79852383-4	chr10	79851886	79852886	+	968.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_029447, exon 1 of 1)	non-coding (NR_029447, exon 1 of 1)	-2046.0	NM_001077363	19205.0	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95135846-4	chr3	95135361	95136361	+	968.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153121, intron 1 of 2)	intron (NM_153121, intron 1 of 2)	1773.0	NM_153121	217779.0	Mm.341945	NM_153121	ENSMUSG00000053769	Lysmd1	2610022K04Rik|AI415311	LysM, putative peptidoglycan-binding, domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-24499710-4	chr9	24499207	24500207	+	968.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359948, intron 1 of 22)	MTE2a|LTR|ERVL-MaLR	3433.0	NM_001359948	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50576217-4	chr17	50575713	50576713	+	968.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	66666.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	40.0	40.5	40.5	66.5	93.5	98.5
Merged-chr1-120020632-4	chr1	120020149	120021149	+	968.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012322, intron 1 of 13)	MTD|LTR|ERVL-MaLR	13669.0	NM_001012322	319229.0	Mm.189223	NM_001012322	ENSMUSG00000026387	Sctr	6530402O03Rik	secretin receptor	protein-coding	9.0	20.0	14.0	5.5	31.5	12.0
Merged-chr3-89905612-4	chr3	89905102	89906102	+	968.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	7594.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31193979-4	chr14	31193411	31194411	+	968.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347583, intron 3 of 13)	intron (NM_001347583, intron 3 of 13)	12915.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-4978432-4	chr6	4977898	4978898	+	968.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	75078.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-108079635-4	chr11	108079130	108080130	+	968.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 3 of 16)	intron (NM_011101, intron 3 of 16)	82782.0	NR_106082	102465705.0		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	0.5	0.0	0.0	0.5	0.0	0.0
Merged-chr13-111979577-3	chr13	111979085	111980085	+	968.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111649.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	9.5	17.5	14.0	43.5	89.0	40.5
Merged-chr19-37474557-4	chr19	37474060	37475060	+	968.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	9306.0	NR_131009	78640.0	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	10.0	10.0	5.5	9.0	18.5	11.0
Merged-chr16-87479210-3	chr16	87478707	87479707	+	968.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_024258, exon 14 of 18)	exon (NM_024258, exon 14 of 18)	16662.0	NM_009840	12469.0	Mm.328673	NM_009840	ENSMUSG00000025613	Cct8	AI132397|Cctq|Tcpq	chaperonin containing Tcp1, subunit 8 (theta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4304194-3	chr18	4303716	4304716	+	968.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48737.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117167445-4	chr4	117166943	117167943	+	968.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290662, intron 10 of 19)	intron (NM_001290662, intron 10 of 19)	-11311.0	NM_009098	20116.0	Mm.260904	NM_009098	ENSMUSG00000047675	Rps8	-	ribosomal protein S8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65096253-3	chr5	65095756	65096756	+	968.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-11312.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64720735-3	chr17	64720207	64721207	+	968.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 16 of 21)	intron (NM_008549, intron 16 of 21)	-46404.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96620942-4	chr10	96620381	96621381	+	968.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007569, exon 2 of 2)	3' UTR (NM_007569, exon 2 of 2)	3880.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128689956-4	chr4	128689450	128690450	+	968.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 1 of 14)	intron (NM_018774, intron 1 of 14)	1212.0	NM_018774	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46313317-4	chr18	46312828	46313828	+	968.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1400.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	0.5	5.5	0.0	1.5	2.0	3.5
Merged-chr11-4989328-3	chr11	4988811	4989811	+	968.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243044, intron 1 of 21)	intron (NM_001243044, intron 1 of 21)	2487.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0.0	5.0	2.5	0.0	5.0	2.0
Merged-chr19-41775978-4	chr19	41775493	41776493	+	968.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027667, intron 9 of 11)	L1MB2|LINE|L1	26091.0	NM_001163495	71085.0	Mm.21646	NM_027667	ENSMUSG00000025154	Arhgap19	4933411B03Rik|AI120128|AW546831|mFLJ00368	Rho GTPase activating protein 19	protein-coding	60.0	175.0	153.5	14.0	34.5	34.0
Merged-chr17-88452606-4	chr17	88452109	88453109	+	968.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355742, intron 1 of 5)	L1Md_F2|LINE|L1	11905.0	NM_001355742	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45255465-4	chr13	45254956	45255956	+	968.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-134286.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-25726577-3	chr6	25726069	25727069	+	968.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36589.0	NM_010338	14763.0	Mm.409670	NM_010338	ENSMUSG00000039904	Gpr37	AI848630|Pael-R	G protein-coupled receptor 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23804875-4	chr17	23804251	23805251	+	968.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175229, intron 1 of 13)	intron (NM_175229, intron 1 of 13)	1564.0	NM_175229	75956.0	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	51.5	200.5	120.0	45.0	157.0	131.5
Merged-chr4-108461750-4	chr4	108461261	108462261	+	968.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175472, intron 2 of 30)	intron (NM_175472, intron 2 of 30)	2335.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	2.0	7.5	10.0	2.0	7.5	10.5
Merged-chr2-166569362-2	chr2	166568862	166569862	+	968.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_177782, exon 38 of 40)	exon (NM_177782, exon 38 of 40)	4840.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-53386923-4	chr9	53386420	53387420	+	968.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212445, intron 1 of 7)	intron (NM_212445, intron 1 of 7)	2897.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8029041-4	chr10	8028552	8029552	+	968.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-72929.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110179414-4	chr7	110178896	110179896	+	968.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42307.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98699637-4	chr15	98699153	98700153	+	968.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8574.0	NM_153518	105833.0	Mm.26205	NM_153518	ENSMUSG00000003354	Ccdc65	4933417K04Rik|AI428139|AU020178|NYD-SP28	coiled-coil domain containing 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114903302-6	chr11	114902825	114903825	+	968.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13284.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	1.5	1.5	2.5	2.0	3.0	2.5
Merged-chr1-14823562-5	chr1	14823141	14824141	+	968.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67675.0	NM_010827	17681.0	Mm.5820	NM_010827	ENSMUSG00000025930	Msc	MyoR|bHLHa22	musculin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99168591-4	chr10	99168083	99169083	+	968.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	60448.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129578728-4	chr4	129578247	129579247	+	968.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182783)	promoter-TSS (NM_182783)	-167.0	NM_182783	230766.0	Mm.20377	NM_182783	ENSMUSG00000050493	Fam167b	SEC	family with sequence similarity 167, member B	protein-coding	16.5	35.5	27.0	13.5	37.5	28.0
Merged-chr3-65943500-4	chr3	65943004	65944004	+	968.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14745.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	1.5	18.5	11.0	1.0	6.0	15.0
Merged-chr8-26980085-4	chr8	26979613	26980613	+	968.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001101502, exon 2 of 2)	3' UTR (NM_001101502, exon 2 of 2)	2777.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117308462-4	chr8	117307946	117308946	+	968.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-40724.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38342470-4	chr6	38342011	38343011	+	968.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028864, intron 1 of 8)	intron (NM_028864, intron 1 of 8)	12092.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85987427-4	chr1	85986924	85987924	+	968.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-26369.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43535877-4	chr1	43535391	43536391	+	968.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 3 of 4)	L3|LINE|CR1	90140.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94813990-4	chr13	94813519	94814519	+	968.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009321, intron 1 of 3)	intron (NM_009321, intron 1 of 3)	25076.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60268766-3	chr18	60268266	60269266	+	968.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001034859, exon 2 of 2)	3' UTR (NM_001034859, exon 2 of 2)	4501.0	NM_001034859	225594.0	Mm.329460	NM_001034859	ENSMUSG00000068606	Gm4841	EG225594|Ifgga3	predicted gene 4841	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4257091-3	chr18	4256634	4257634	+	968.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	91302.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156524271-4	chr2	156523784	156524784	+	968.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291122, intron 14 of 20)	intron (NM_001291122, intron 14 of 20)	-23292.0	NM_026661	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	7.5	0.0	2.5	3.5	5.0	2.0
Merged-chr3-88504542-4	chr3	88504052	88505052	+	968.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1200.0	NM_001002011	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52612342-4	chr3	52611834	52612834	+	968.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEd|LINE|L1	95370.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	0.0	0.5	0.0	0.0	2.0	2.0
Merged-chr12-3572375-7	chr12	3571862	3572862	+	968.514282	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_149729)	promoter-TSS (NR_149729)	-29.0	NM_001162465	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-103749733-2	chr5	103749233	103750233	+	968.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4429.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171408894-2	chr1	171408425	171409425	+	968.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001005508, exon 12 of 12)	exon (NM_001005508, exon 12 of 12)	-2388.0	NM_001305678	22278.0	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	13.0	9.5	13.0	19.0	10.5	17.0
Merged-chr2-164493696-4	chr2	164493150	164494150	+	968.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026797)	TTS (NM_026797)	-3875.0	NM_133779	78928.0	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding	27.5	40.5	38.5	39.0	93.0	42.5
Merged-chr16-91402650-2	chr16	91402150	91403150	+	968.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010509, intron 8 of 8)	intron (NM_010509, intron 8 of 8)	-3585.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69667920-2	chr11	69667420	69668420	+	968.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159375, intron 9 of 10)	intron (NM_001159375, intron 9 of 10)	-1750.0	NR_110993	12514.0	Mm.15819	NM_009853	ENSMUSG00000018774	Cd68	Lamp4|Scard1|gp110	CD68 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117583479-2	chr8	117582979	117583979	+	968.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 12 of 32)	intron (NM_172285, intron 12 of 32)	85204.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117864905-4	chr11	117864430	117865430	+	968.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001085535, exon 4 of 4)	3' UTR (NM_001085535, exon 4 of 4)	4178.0	NM_001085535	546519.0	Mm.385578	NM_001085535	ENSMUSG00000070330	Tmem235	Cldn27|Gm12581	transmembrane protein 235	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71205754-2	chr8	71205252	71206252	+	968.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_131056, intron 1 of 4)	intron (NR_131056, intron 1 of 4)	1196.0	NR_131056	330796.0	Mm.258257	NR_131056		Gm38415	E230016D10	predicted gene, 38415	ncRNA	34.5	38.5	33.0	14.5	52.0	41.0
Merged-chr11-75141697-2	chr11	75141197	75142197	+	968.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 14 of 18)	intron (NM_001002764, intron 14 of 18)	26455.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	9.0	4.0	11.0	0.5	19.5	4.5
Merged-chr10-67534796-2	chr10	67534296	67535296	+	968.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-3073.0	NM_010118	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5256239-4	chr6	5255715	5256715	+	968.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173006)	promoter-TSS (NM_173006)	18.0	NM_173006	269823.0	Mm.9122	NM_173006	ENSMUSG00000029759	Pon3	2810004E20|AI786302	paraoxonase 3	protein-coding	0.0	7.0	0.0	1.0	6.5	0.0
Merged-chr1-52952381-2	chr1	52951881	52952881	+	968.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144953, intron 1 of 1)	intron (NM_144953, intron 1 of 1)	459.0	NM_144953	67080.0	Mm.236287	NM_144953	ENSMUSG00000043629	1700019D03Rik	2410136C24Rik|AA410151|smAKAP	RIKEN cDNA 1700019D03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17586282-2	chr6	17585782	17586782	+	968.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50728.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0.5	17.0	2.0	0.0	2.5	0.0
Merged-chr8-84501765-4	chr8	84501256	84502256	+	968.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252060, intron 3 of 47)	intron (NM_001252060, intron 3 of 47)	86392.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	3.5	21.5	23.5	13.0	28.0	18.0
Merged-chr5-5574205-2	chr5	5573705	5574705	+	968.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033499, intron 1 of 1)	intron (NR_033499, intron 1 of 1)	406.0	NR_033499	667705.0	Mm.376656	NR_033499	ENSMUSG00000073234	Gm8773	EG667705|Gm29287	predicted gene 8773	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101360645-4	chr7	101360151	101361151	+	968.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	12582.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	15.5	37.5	27.5	9.5	56.0	22.5
Merged-chr4-40947413-2	chr4	40946913	40947913	+	968.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171739, intron 1 of 6)	intron (NM_001171739, intron 1 of 6)	881.0	NM_009736	12017.0	Mm.688	NM_009736	ENSMUSG00000028416	Bag1	BAG-1|Rap46	BCL2-associated athanogene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74020078-2	chr17	74019578	74020578	+	968.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053188, intron 4 of 4)	intron (NM_053188, intron 4 of 4)	27838.0	NM_053188	94224.0	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32200812-5	chr12	32200278	32201278	+	968.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020272, intron 3 of 10)	intron (NM_020272, intron 3 of 10)	7560.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	5.0	4.5	0.5	0.5	2.5	1.5
Merged-chr5-90020300-4	chr5	90019784	90020784	+	968.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-136950.0	NM_001081401	330119.0	Mm.133062	NM_177872	ENSMUSG00000043635	Adamts3	1100001H14Rik|6330442E02Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	protein-coding	19.0	27.0	11.0	6.0	11.0	6.0
Merged-chr5-92436232-4	chr5	92435750	92436750	+	968.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5A|LINE|L1	-1051.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45599614-4	chr17	45599144	45600144	+	968.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199115)	promoter-TSS (NM_001199115)	-41.0	NM_001199115	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120108861-2	chr6	120108361	120109361	+	968.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	15481.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110705969-4	chr12	110705468	110706468	+	968.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-9573.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-108447206-4	chr5	108446710	108447710	+	968.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172883, intron 1 of 9)	intron (NM_172883, intron 1 of 9)	1890.0	NM_001359977	243197.0	Mm.106818	NM_172883	ENSMUSG00000029490	Mfsd7a	4732482E20Rik|Mfsd7|Slc49a3	major facilitator superfamily domain containing 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-40410053-3	chr1	40409550	40410550	+	968.4722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVL-int|LTR|ERVL	-19520.0	NM_001294171	17082.0	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-140955500-4	chr7	140954967	140955967	+	968.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030694, intron 1 of 1)	intron (NM_030694, intron 1 of 1)	494.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91056234-4	chr16	91055736	91056736	+	968.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028905, exon 3 of 3)	exon (NM_028905, exon 3 of 3)	-11857.0	NR_152264	67367.0	Mm.347	NM_026110	ENSMUSG00000022974	Paxbp1	1810007M14Rik|C21orf66|Gcfc|Gcfc1|Pax3/7bp	PAX3 and PAX7 binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21689364-4	chr16	21688862	21689862	+	968.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001881, intron 1 of 1)	ORR1D2|LTR|ERVL-MaLR	5303.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-17885495-4	chr14	17884859	17885859	+	968.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-96285.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-84597139-4	chr11	84596664	84597664	+	968.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71504.0	NR_038057	78365.0	Mm.260345	NR_038057	ENSMUSG00000087211	Lhx1os	1500016L03Rik|Lhx1as	LIM homeobox 1, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-148645066-4	chr6	148644570	148645570	+	968.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-30761.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-46013240-4	chr9	46012786	46013786	+	968.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357241)	promoter-TSS (NM_001357241)	466.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-99205365-4	chr6	99204864	99205864	+	968.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	61151.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-148444867-3	chr6	148444332	148445332	+	968.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347518)	promoter-TSS (NM_001347518)	-480.0	NM_001347518	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31761861-4	chr2	31761351	31762351	+	968.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	1678.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106704156-4	chr11	106703650	106704650	+	968.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 2 of 14)	intron (NM_001305158, intron 2 of 14)	11131.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182707686-4	chr1	182707186	182708186	+	968.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	41494.0	NM_001033547	433386.0	Mm.338103	NM_001033547	ENSMUSG00000043429	Ccdc185	4922505E12Rik	coiled-coil domain containing 185	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27715547-4	chr15	27715054	27716054	+	968.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34012.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79864974-4	chr3	79864473	79865473	+	968.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20957.0	NM_133187	68659.0	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	0.0	4.0	3.0	0.0	3.5	4.0
Merged-chr14-14068823-4	chr14	14068318	14069318	+	968.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139227, intron 4 of 11)	intron (NM_139227, intron 4 of 11)	52086.0	NM_025550	66413.0	Mm.27591	NM_025550	ENSMUSG00000021737	Psmd6	2400006A19Rik	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-31918739-6	chr18	31918193	31919193	+	968.4097289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6790.0	NM_026006	67158.0	Mm.31537	NM_026006	ENSMUSG00000044982	Sft2d3	2610206C24Rik|AI847965|AW046173	SFT2 domain containing 3	protein-coding	3.0	11.0	6.0	3.5	11.0	6.0
Merged-chr13-58503792-4	chr13	58503292	58504292	+	968.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100449.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117083640-4	chr11	117083144	117084144	+	968.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6296.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27042473-4	chr14	27041973	27042973	+	968.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134437, intron 1 of 12)	intron (NM_134437, intron 1 of 12)	3472.0	NM_134437	171463.0	Mm.206726	NM_027265	ENSMUSG00000040717	Il17rd	2810004A10Rik|AI428510|Sef|Sef-S	interleukin 17 receptor D	protein-coding	4.5	0.0	4.0	9.0	0.0	4.0
Merged-chr7-141308830-4	chr7	141308309	141309309	+	968.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016874, intron 10 of 11)	intron (NM_016874, intron 10 of 11)	16803.0	NM_007878	13491.0	Mm.41075	NM_007878	ENSMUSG00000025496	Drd4	AW125663|D4R|Drd-4	dopamine receptor D4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88213637-2	chr1	88213137	88214137	+	968.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_201645, intron 1 of 4)	intron (NM_201645, intron 1 of 4)	1678.0	NM_201645	394436.0	Mm.300095	NM_201645	ENSMUSG00000089960	Ugt1a1	Gnt1|UDPGT 1-1|UGT1A01|Udpgt-1a|UgtBr1	UDP glucuronosyltransferase 1 family, polypeptide A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90125955-4	chr3	90125443	90126443	+	968.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029937, intron 7 of 39)	intron (NM_029937, intron 7 of 39)	21811.0	NM_029937	77595.0	Mm.159949	NM_029937	ENSMUSG00000027939	Nup210l	4930548O11Rik|R26-EGFP|Tg(Gt(ROSA)26Sor-EGFP)130910Eps	nucleoporin 210-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-104859809-2	chr5	104859308	104860308	+	968.333374	f0_c57.idr|f1_c57bl6.idr	5' UTR (NM_001039231, exon 1 of 5)	5' UTR (NM_001039231, exon 1 of 5)	219.0	NR_155269	626391.0	Mm.385405	NM_001039231	ENSMUSG00000072774	Zfp951	C230055K05Rik|Gm38611	zinc finger protein 951	protein-coding	19.0	42.0	47.0	1.5	11.5	2.5
Merged-chr12-111172932-2	chr12	111172432	111173432	+	968.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286122, intron 1 of 9)	intron (NM_001286122, intron 1 of 9)	6562.0	NM_011632	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23953857-2	chr16	23953357	23954357	+	968.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23063.0	NM_001008230	224055.0	Mm.39248	NM_001008230	ENSMUSG00000047531	Rtp2	Gm605	receptor transporter protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127578243-4	chr10	127577772	127578772	+	968.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 21 of 88)	intron (NM_008512, intron 21 of 88)	42876.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52825728-4	chr6	52825217	52826217	+	968.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 2 of 4)	intron (NM_173406, intron 2 of 4)	83903.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97826682-4	chr11	97826211	97827211	+	968.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010688, intron 4 of 6)	intron (NM_010688, intron 4 of 6)	-14069.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	12.0	15.5	24.5	1.0	21.5	6.0
Merged-chr4-149666087-3	chr4	149665585	149666585	+	968.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029837, intron 2 of 23)	ID_B1|SINE|B4	-2769.0	NM_001164052	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	2.5	2.5	8.5	3.5	3.5	2.5
Merged-chr3-146058414-4	chr3	146057933	146058933	+	968.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172864, intron 16 of 22)	intron (NM_172864, intron 16 of 22)	49603.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39650936-4	chr1	39650420	39651420	+	968.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_170597, exon 1 of 4)	exon (NM_170597, exon 1 of 4)	262.0	NM_170597	263764.0	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39538430-4	chr6	39537937	39538937	+	968.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172477, intron 1 of 18)	intron (NM_172477, intron 1 of 18)	19397.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-53011437-3	chr2	53010946	53011946	+	968.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	153578.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121184689-3	chr3	121184178	121185178	+	968.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12983.0	NM_025637	66568.0	Mm.263163	NM_025637	ENSMUSG00000028133	Rwdd3	2510027J23Rik|3110037C01Rik|AI035684|AI662458|Rsume|X2CR1	RWD domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-101597407-4	chr3	101596902	101597902	+	968.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	7305.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83134916-4	chr15	83134404	83135404	+	968.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 3 of 7)	intron (NM_001347082, intron 3 of 7)	-12103.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26231233-4	chr17	26230723	26231723	+	968.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	13019.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	68.0	185.0	147.5	76.5	192.5	137.5
Merged-chr2-25587957-4	chr2	25587450	25588450	+	968.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024616, intron 8 of 14)	intron (NM_001024616, intron 8 of 14)	-7851.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-79558033-4	chr14	79557531	79558531	+	968.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 2 of 8)	intron (NM_007920, intron 2 of 8)	-29629.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116491260-4	chr7	116490766	116491766	+	968.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-13103.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129877522-7	chr4	129877033	129878033	+	968.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28693.0	NR_045190	319894.0	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	143.5	337.0	246.0	148.5	274.5	196.0
Merged-chr12-102877586-6	chr12	102877095	102878095	+	968.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172806, intron 1 of 11)	CpG	811.0	NM_172806	238386.0	Mm.63456	NM_172806	ENSMUSG00000041702	Btbd7	5730507E09Rik|8030448M07|E130118E17Rik|FUP1|mKIAA1525	BTB (POZ) domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76778722-6	chr14	76778202	76779202	+	968.2666630000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18571.0	NR_153763	73883.0	Mm.489041	NR_153763		4930431P22Rik	-	RIKEN cDNA 4930431P22 gene	ncRNA	1.0	17.0	10.5	8.5	3.0	0.5
Merged-chr1-88265039-3	chr1	88264508	88265508	+	968.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040291, exon 5 of 5)	non-coding (NR_040291, exon 5 of 5)	4400.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-81860244-4	chr12	81859747	81860747	+	968.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_018814, exon 1 of 36)	5' UTR (NM_018814, exon 1 of 36)	217.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-17090318-4	chr7	17089841	17090841	+	968.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310628, intron 1 of 5)	intron (NM_001310628, intron 1 of 5)	16301.0	NM_007676	26436.0	Mm.143686	NM_007676	ENSMUSG00000066760	Psg16	Cea11|PSG|bCEA	pregnancy specific glycoprotein 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35166525-2	chr17	35166026	35167026	+	968.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-1649.0	NM_020027	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	6.5	5.5	8.5	3.0	7.0	5.5
Merged-chr17-34044438-2	chr17	34043938	34044938	+	968.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009926, intron 4 of 63)	MIRc|SINE|MIR	5300.0	NM_001317722	12815.0	Mm.20230	NM_009926	ENSMUSG00000024330	Col11a2	-	collagen, type XI, alpha 2	protein-coding	3.5	2.5	1.0	0.0	4.0	1.5
Merged-chr8-47674485-4	chr8	47673984	47674984	+	968.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023503, intron 1 of 1)	CpG	675.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-15519942-4	chr8	15519448	15520448	+	968.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	462295.0	NM_008664	17930.0	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41358842-4	chr4	41358351	41359351	+	968.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355508, intron 1 of 6)	intron (NM_001355508, intron 1 of 6)	6888.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70755967-4	chr8	70755456	70756456	+	968.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009001, exon 2 of 5)	exon (NM_009001, exon 2 of 5)	1277.0	NM_001166399	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	19.0	41.5	31.0	15.5	36.5	26.5
Merged-chr6-138095311-4	chr6	138094803	138095803	+	968.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15387.0	NM_177787	277898.0	Mm.269823	NM_177787	ENSMUSG00000044378	Slc15a5	9830102E05Rik	solute carrier family 15, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31474093-4	chr15	31473589	31474589	+	968.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172606, intron 20 of 25)	intron (NM_172606, intron 20 of 25)	-20400.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115072288-4	chr5	115071794	115072794	+	968.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029012, intron 2 of 10)	RSINE1|SINE|B4	35668.0	NM_001271591	100502825.0	Mm.361657	NM_001271590		Rpl37rt	EyeLinc4|Gm13826	ribosomal protein L37, retrotransposed	protein-coding	0.0	4.5	2.5	2.5	6.0	1.0
Merged-chr12-40469141-4	chr12	40468628	40469628	+	968.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	23075.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-58534571-4	chr2	58534090	58535090	+	968.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110204, intron 2 of 12)	intron (NM_001110204, intron 2 of 12)	26820.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73492423-3	chr15	73491916	73492916	+	968.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20144.0	NR_152151	105841.0	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117908446-3	chr4	117907907	117908907	+	968.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146152, intron 2 of 19)	intron (NM_146152, intron 2 of 19)	6592.0	NM_146152	230673.0	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	2.5	0.5	8.0	2.5	2.0	8.5
Merged-chr18-8677672-4	chr18	8677180	8678180	+	968.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-535176.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	44.5	152.5	95.5	17.5	47.0	31.5
Merged-chr3-115818905-4	chr3	115818421	115819421	+	968.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69138.0	NR_027894	68161.0	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122697493-3	chr5	122697044	122698044	+	968.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10000.0	NM_001310720	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	10.0	1.0	7.0	33.0	37.0	16.5
Merged-chr3-88624324-3	chr3	88623859	88624859	+	968.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 1 of 21)	intron (NM_001198913, intron 1 of 21)	2965.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	14.0	24.5	21.0	9.5	49.0	36.5
Merged-chr15-8589852-3	chr15	8589352	8590352	+	968.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	120955.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62554827-2	chr10	62554327	62555327	+	968.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23630.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102354140-2	chr12	102353640	102354640	+	968.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 4 of 9)	intron (NM_177620, intron 4 of 9)	70499.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	88.0	142.5	94.0	34.5	43.0	62.0
Merged-chr2-22861441-4	chr2	22860953	22861953	+	968.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 10 of 13)	intron (NM_019456, intron 10 of 13)	-34069.0	NM_019501	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158546975-2	chr2	158546475	158547475	+	968.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145015, intron 12 of 14)	intron (NM_001145015, intron 12 of 14)	34179.0	NM_001145015	545481.0	Mm.125371	NM_001145015	ENSMUSG00000074625	Arhgap40	C20orf95|Gm14203	Rho GTPase activating protein 40	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr11-87764503-2	chr11	87764028	87765028	+	968.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172449, intron 5 of 31)	CpG-2413	3987.0	NM_172449	207777.0	Mm.342019	NM_172449	ENSMUSG00000034156	Tspoap1	Bzrap1|D230016K05|PRAX-1|mKIAA0612	TSPO associated protein 1	protein-coding	0.0	0.0	3.5	0.0	8.0	4.0
Merged-chr13-60701975-4	chr13	60701384	60702384	+	968.15625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	intron (NM_134062, intron 3 of 26)	84480.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	3.5	26.5	10.5	5.0	26.5	10.5
Merged-chr19-11966445-5	chr19	11965954	11966954	+	968.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033174, intron 1 of 13)	intron (NM_001033174, intron 1 of 13)	610.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-72212273-4	chr1	72211775	72212775	+	968.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357488)	promoter-TSS (NM_001357488)	32.0	NM_001005423	381269.0	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56777193-4	chr19	56776677	56777677	+	968.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36506.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18687580-4	chr16	18687069	18688069	+	968.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57631.0	NM_213614	18951.0	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9388101-4	chr13	9387501	9388501	+	968.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	111476.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80383876-4	chr11	80383312	80384312	+	968.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045038, intron 1 of 16)	intron (NR_045038, intron 1 of 16)	533.0	NM_001130171	22680.0	Mm.401332	NM_011751	ENSMUSG00000017421	Zfp207	8430401D15Rik|BuGZ|Zep|Znf207	zinc finger protein 207	protein-coding	71.5	142.0	119.5	56.0	166.0	124.0
Merged-chr7-29767232-4	chr7	29766778	29767778	+	968.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1274.0	NM_023750	74352.0	Mm.251083	NM_023750	ENSMUSG00000046185	Zfp84	2210410P13Rik|4633401C23Rik|AI415447|BB081605|C86188|KRAB18|Zfp69	zinc finger protein 84	protein-coding	1.0	16.0	18.0	5.5	29.0	13.5
Merged-chr7-96413726-3	chr7	96413210	96414210	+	968.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 2 of 32)	intron (NM_011858, intron 2 of 32)	-71746.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	5.5	5.5	10.0	17.5	17.0	19.5
Merged-chr8-24427722-4	chr8	24427216	24428216	+	968.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11230.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87151664-4	chr3	87151158	87152158	+	968.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170985, intron 1 of 15)	intron (NM_001170985, intron 1 of 15)	23089.0	NM_001170985	170643.0	Mm.89552	NM_130867	ENSMUSG00000041734	Kirrel	6720469N11Rik|Kirrel1|Neph1	kirre like nephrin family adhesion molecule 1	protein-coding	0.0	0.0	1.0	0.0	1.5	0.0
Merged-chr10-93171336-4	chr10	93170821	93171821	+	968.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146239, intron 1 of 16)	ORR1E|LTR|ERVL-MaLR	8536.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	6.0	41.5	19.5	44.5	26.5	28.0
Merged-chr7-35554923-4	chr7	35554437	35555437	+	968.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033080, intron 1 of 2)	intron (NM_033080, intron 1 of 2)	991.0	NM_033080	110959.0	Mm.410206	NM_033080	ENSMUSG00000034875	Nudt19	D7Rp2|D7Rp2-r|D7Rp2-s|D7Rp2e|RP2-r|RP2-s	nudix (nucleoside diphosphate linked moiety X)-type motif 19	protein-coding	5.0	9.5	6.5	5.0	11.0	6.5
Merged-chr11-100369967-4	chr11	100369468	100370468	+	968.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010593, exon 14 of 14)	3' UTR (NM_010593, exon 14 of 14)	-13827.0	NM_010404	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-12091059-4	chr16	12090579	12091579	+	968.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028277, intron 2 of 4)	Tigger9b|DNA|TcMar-Tigger	106966.0	NM_001174086	72555.0	Mm.310139	NM_028277	ENSMUSG00000022494	Shisa9	2700045P11Rik|Ckamp44	shisa family member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127538051-4	chr10	127537563	127538563	+	968.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008512)	TTS (NM_008512)	-3504.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84086659-4	chr18	84086169	84087169	+	968.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081300)	promoter-TSS (NM_001081300)	-107.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35124947-4	chr7	35124442	35125442	+	968.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5649.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-27058455-4	chr8	27057983	27058983	+	968.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15928.0	NM_054057	114863.0	Mm.277501	NM_054057	ENSMUSG00000031485	Plpbp	1700024N20Rik|2200002F22Rik|Prosc	pyridoxal phosphate binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54742590-3	chr14	54742080	54743080	+	968.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	-30406.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	11.5	29.5	52.0	26.0	14.0	48.5
Merged-chr6-136742516-3	chr6	136741987	136742987	+	968.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145067, intron 10 of 25)	intron (NM_145067, intron 10 of 25)	39255.0	NM_145067	14917.0	Mm.222729	NM_145067	ENSMUSG00000042638	Gucy2c	AI893437|GC-C|Gcc	guanylate cyclase 2c	protein-coding	15.0	16.0	0.5	12.5	15.5	12.5
Merged-chr12-36188450-3	chr12	36187977	36188977	+	968.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146033, intron 7 of 9)	intron (NM_146033, intron 7 of 9)	29741.0	NM_027699	71156.0	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	0.0	2.0	10.0	0.0	7.0	4.5
Merged-chr5-4962167-4	chr5	4961679	4962679	+	968.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 10 of 14)	intron (NM_011074, intron 10 of 14)	-203963.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59265839-4	chr4	59265362	59266362	+	968.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105031, intron 3 of 3)	intron (NR_105031, intron 3 of 3)	5811.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	6.0	14.5	17.5	5.5	25.0	15.5
Merged-chr17-34308300-4	chr17	34307847	34308847	+	968.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010382, intron 1 of 5)	intron (NM_010382, intron 1 of 5)	2480.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	17.0	51.5	40.0	26.5	210.5	48.5
Merged-chr13-51710934-4	chr13	51710424	51711424	+	968.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013660, intron 11 of 15)	intron (NM_013660, intron 11 of 15)	59216.0	NM_029279	75420.0	Mm.275981	NM_029279	ENSMUSG00000035139	Secisbp2	2210413N07Rik|2810012K13Rik|SBP2	SECIS binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3703952-4	chr2	3703450	3704450	+	968.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9508.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31315829-4	chr15	31315339	31316339	+	968.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357922, intron 1 of 2)	intron (NM_001357922, intron 1 of 2)	51920.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-89871664-4	chr16	89871143	89872143	+	968.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 6 of 27)	intron (NM_009384, intron 6 of 27)	-53291.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11065004-2	chr16	11064504	11065504	+	968.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1294.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-118513758-2	chr1	118513258	118514258	+	968.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359347, intron 20 of 40)	RSINE1|SINE|B4	-54493.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	2.5	3.5	0.5	2.5	3.5	0.5
Merged-chr5-135013315-3	chr5	135012818	135013818	+	968.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_026688)	promoter-TSS (NR_026688)	-161.0	NR_026688	69812.0	Mm.18422	NR_026688	ENSMUSG00000085042	Abhd11os	2010001M06Rik|AI462243|Wbscr26|Wnscr26	abhydrolase domain containing 11, opposite strand	ncRNA	0.0	0.0	3.0	0.0	0.0	3.0
Merged-chr11-74828128-2	chr11	74827628	74828628	+	968.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2796.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	7.0	35.0	12.5	9.5	27.5	15.0
Merged-chr17-34002326-2	chr17	34001827	34002827	+	968.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-1980.0	NM_001347346	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	10.0	6.0	8.5	0.0	3.0	0.5
Merged-chr4-59096592-4	chr4	59096096	59097096	+	968.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61440.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	0.0	1.5	0.0	0.0	2.5	1.0
Merged-chr10-16412458-4	chr10	16411960	16412960	+	968.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	620683.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-57524893-2	chr14	57524393	57525393	+	968.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145837)	promoter-TSS (NM_145837)	64.0	NM_145837	239114.0	Mm.390726	NM_145837	ENSMUSG00000050222	Il17d	AI462269|IL-17D	interleukin 17D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111967210-4	chr13	111966703	111967703	+	968.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	99267.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	11.0	13.0	21.5	16.0	21.0	28.0
Merged-chr11-117447986-2	chr11	117447486	117448486	+	968.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-26269.0	NR_136918	667423.0	Mm.383716	NR_136918	ENSMUSG00000083705	Gm8624	EG667423|EyeLinc11	ribosomal protein S23 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-149020060-2	chr3	149019560	149020560	+	968.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65425.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr12-112956040-4	chr12	112955547	112956547	+	968.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13905.0	NM_001316724	66174.0	Mm.7070	NM_025399	ENSMUSG00000002804	Nudt14	1110030M18Rik|UGPPase	nudix (nucleoside diphosphate linked moiety X)-type motif 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72216044-4	chr8	72215506	72216506	+	968.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3169.0	NM_001080812	234421.0	Mm.211247	NM_001080812	ENSMUSG00000074240	Cib3	C730014M21Rik|Gm1107|KIP3	calcium and integrin binding family member 3	protein-coding	7.0	25.5	1.5	7.0	12.0	17.0
Merged-chr6-52471764-4	chr6	52471245	52472245	+	968.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20706.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128763074-2	chr6	128762574	128763574	+	968.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25567.0	NM_001159904	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-67723379-1	chr13	67722879	67723879	+	968.0	f1_c57bl6.idr	intron (NM_145622, intron 1 of 3)	intron (NM_145622, intron 1 of 3)	5794.0	NM_145622	235907.0	Mm.440123	NM_145622	ENSMUSG00000071281	Zfp65	KRAB5|Zfp71-rs1|pz114	zinc finger protein 65	protein-coding	10.0	18.0	11.5	11.0	21.0	16.5
Merged-chr12-34433595-3	chr12	34433098	34434098	+	968.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 5 of 27)	intron (NM_001271386, intron 5 of 27)	95291.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-37140770-3	chr3	37140287	37141287	+	968.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14833.0	NM_008366	16183.0	Mm.14190	NM_008366	ENSMUSG00000027720	Il2	Il-2	interleukin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121877455-3	chr8	121876959	121877959	+	968.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30227.0	NM_011404	20539.0	Mm.22374	NM_011404	ENSMUSG00000040010	Slc7a5	4F2LC|D0H16S474E|LAT1|TA1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 5	protein-coding	2.5	18.5	10.0	9.5	0.0	0.0
Merged-chr13-43752581-4	chr13	43752042	43753042	+	968.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57D|LTR|ERV1	-32570.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	52.0	56.5	37.5	32.0	46.0	40.5
Merged-chr7-125511620-1	chr7	125511120	125512120	+	968.0	f1_c57bl6.idr	Intergenic	Intergenic	-20078.0	NM_026330	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	0.0	16.5	6.5	3.0	0.0	8.5
Merged-chr8-70241152-1	chr8	70240652	70241652	+	968.0	f1_c57bl6.idr	intron (NM_172755, intron 2 of 10)	intron (NM_172755, intron 2 of 10)	-6730.0	NM_133972	76813.0	Mm.383251	NM_133972	ENSMUSG00000002343	Armc6	2410153K17Rik|AW554412	armadillo repeat containing 6	protein-coding	2.5	2.5	10.0	0.0	0.0	2.0
Merged-chr2-68350869-4	chr2	68350362	68351362	+	968.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 10 of 17)	intron (NM_016866, intron 10 of 17)	121119.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137510295-4	chr5	137509787	137510787	+	968.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CGG)n|Simple_repeat|Simple_repeat	-7858.0	NM_028753	74097.0	Mm.290242	NM_028753	ENSMUSG00000029715	Pop7	0610037N12Rik|AI852017|Rpp20	processing of precursor 7, ribonuclease P family, (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31200198-9	chr16	31199647	31200647	+	968.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030138, intron 1 of 22)	intron (NM_030138, intron 1 of 22)	1091.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	25.5	39.0	58.0	11.5	17.0	13.0
Merged-chr19-56455906-4	chr19	56455365	56456365	+	968.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5772.0	NM_001164263	226245.0	Mm.156742	NM_172641	ENSMUSG00000035818	Plekhs1	9930023K05Rik	pleckstrin homology domain containing, family S member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3676985-2	chr8	3676485	3677485	+	968.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025701, intron 1 of 1)	intron (NM_025701, intron 1 of 1)	508.0	NM_025701	66682.0	Mm.29090	NM_025701	ENSMUSG00000040236	Trappc5	4021401A16Rik|TRS31	trafficking protein particle complex 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91851036-2	chr16	91850536	91851536	+	968.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 21 of 28)	intron (NM_001110275, intron 21 of 28)	80594.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	26.0	61.0	35.5	9.5	33.5	23.5
Merged-chr16-31945293-2	chr16	31944793	31945793	+	968.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172822, exon 3 of 3)	exon (NM_172822, exon 3 of 3)	3228.0	NR_027897	106264.0	Mm.347369	NM_025320	ENSMUSG00000107002	0610012G03Rik	AI839730	RIKEN cDNA 0610012G03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31114411-4	chr2	31113904	31114904	+	968.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 1 of 15)	MT2B|LTR|ERVL	-17904.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35754970-4	chr16	35754476	35755476	+	967.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	MTD|LTR|ERVL-MaLR	14380.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	22.0	48.5	43.5	27.5	86.0	39.0
Merged-chr3-106573384-4	chr3	106572878	106573878	+	967.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025582, intron 6 of 6)	intron (NM_001025582, intron 6 of 6)	-25576.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95773664-4	chr15	95773165	95774165	+	967.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-17178.0	NM_175344	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-55311754-4	chr9	55311264	55312264	+	967.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15149.0	NM_172923	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20361903-4	chr16	20361400	20362400	+	967.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013790, intron 24 of 29)	RLTR9E|LTR|ERVK	-36496.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105019893-4	chr3	105019387	105020387	+	967.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 3 of 5)	intron (NM_030249, intron 3 of 5)	33066.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24800083-4	chr13	24799577	24800577	+	967.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1580.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114571348-4	chr11	114570840	114571840	+	967.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97203.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88500060-4	chr5	88499564	88500564	+	967.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017468, intron 9 of 9)	intron (NM_017468, intron 9 of 9)	12089.0	NM_017468	13801.0	Mm.8014	NM_017468	ENSMUSG00000029286	Enam	abte	enamelin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21696873-4	chr10	21696354	21697354	+	967.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6009.0	NR_045843	432436.0	Mm.244553	NM_001004162	ENSMUSG00000056716	Gm5420	EG432436	predicted gene 5420	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34027363-4	chr17	34026891	34027891	+	967.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008202)	TTS (NM_008202)	664.0	NM_013543	14979.0	Mm.275452	NM_013543	ENSMUSG00000073422	H2-Ke6	D17H6S112E|H-2Ke6|Hsd17b8|Ke-6|Ke6|Ring2	H2-K region expressed gene 6	protein-coding	27.5	52.5	26.0	10.0	28.0	15.5
Merged-chr5-122684123-4	chr5	122683610	122684610	+	967.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001284402, exon 13 of 13)	3' UTR (NM_001284402, exon 13 of 13)	1513.0	NR_106195	102465902.0		NR_106195	ENSMUSG00000099324	Mir8115	Gm28012|mmu-mir-8115	microRNA 8115	ncRNA	123.0	240.5	245.5	68.5	137.0	82.5
Merged-chr3-135424058-4	chr3	135423586	135424586	+	967.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025902)	promoter-TSS (NM_025902)	-653.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5727876-6	chr19	5727433	5728433	+	967.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_181452)	TTS (NM_181452)	-1616.0	NM_053252	114601.0	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	9.0	17.5	19.0	3.5	32.5	19.5
Merged-chr4-149665567-3	chr4	149665062	149666062	+	967.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029837, intron 2 of 23)	intron (NM_001029837, intron 2 of 23)	-2246.0	NM_001164052	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80313809-3	chr10	80313315	80314315	+	967.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011789, exon 14 of 14)	exon (NM_011789, exon 14 of 14)	6733.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36992464-4	chr17	36991958	36992958	+	967.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER34-int|LTR|ERV1	-2954.0	NM_001115075	240095.0	Mm.246609	NM_001115075	ENSMUSG00000024459	H2-M5	CRW2|D130003B22Rik|H-2M5	histocompatibility 2, M region locus 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-92804526-4	chr13	92804018	92805018	+	967.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9700.0	NM_011582	21828.0	Mm.20865	NM_011582	ENSMUSG00000021702	Thbs4	TSP4	thrombospondin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-18010488-4	chr5	18009950	18010950	+	967.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 5 of 7)	intron (NM_001081143, intron 5 of 7)	47880.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69261455-4	chr11	69260976	69261976	+	967.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24454.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-68070762-4	chr7	68070245	68071245	+	967.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 2 of 20)	L1MD|LINE|L1	118488.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	7.0	13.5	21.0	5.5	7.5	7.0
Merged-chr10-95703213-7	chr10	95702713	95703713	+	967.8639529999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139067.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62549930-4	chr10	62549432	62550432	+	967.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22487.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121985152-2	chr9	121984653	121985653	+	967.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289559, intron 1 of 2)	intron (NM_001289559, intron 1 of 2)	10873.0	NM_001289559	215494.0	Mm.402151	NM_153540	ENSMUSG00000066235	Pomgnt2	Ago61|C85492|Gtdc2	protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2	protein-coding	3.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66708739-4	chr15	66708221	66709221	+	967.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 22 of 47)	MIRc|SINE|MIR	37951.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90136430-2	chr7	90135932	90136932	+	967.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	URR1A|DNA|hAT-Charlie	6219.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	22.0	67.5	28.0	38.0	41.0	46.0
Merged-chr15-41603498-4	chr15	41602986	41603986	+	967.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 2 of 17)	intron (NR_152565, intron 2 of 17)	154383.0	NM_001358977	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134925973-2	chr4	134925473	134926473	+	967.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_023665, intron 3 of 4)	intron (NM_023665, intron 3 of 4)	2348.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86618722-4	chr11	86618221	86619221	+	967.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 7 of 11)	intron (NM_001356531, intron 7 of 11)	-34563.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11637288-4	chr2	11636789	11637789	+	967.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5503.0	NM_008367	16184.0	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25188476-6	chr17	25187970	25188970	+	967.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001197024)	promoter-TSS (NM_001197024)	70.0	NM_001197024	74154.0	Mm.267353	NM_028789	ENSMUSG00000015127	Unkl	1300004G08Rik	unkempt family like zinc finger	protein-coding	28.5	30.5	39.5	16.5	34.0	32.0
Merged-chr3-61442364-6	chr3	61441850	61442850	+	967.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77843.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55518121-2	chr12	55517621	55518621	+	967.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25474.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5511657-4	chr17	5511155	5512155	+	967.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	19055.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136675932-4	chr1	136675427	136676427	+	967.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7469.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119422237-3	chr8	119421746	119422746	+	967.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14916.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54617993-4	chr14	54617461	54618461	+	967.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011186)	promoter-TSS (NM_011186)	34.0	NM_011186	19173.0	Mm.8911	NM_011186	ENSMUSG00000022193	Psmb5	-	proteasome (prosome, macropain) subunit, beta type 5	protein-coding	54.0	290.0	142.0	71.5	168.5	149.5
Merged-chr8-39620493-4	chr8	39620046	39621046	+	967.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113326, intron 4 of 9)	RMER6A|LTR|ERVK	22132.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	71.5	163.5	105.5	69.0	177.5	98.0
Merged-chr1-80641985-4	chr1	80641470	80642470	+	967.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 2 of 55)	intron (NM_175291, intron 2 of 55)	23382.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85087578-1	chr1	85087078	85088078	+	967.7999880000001	f1_balb.idr	TTS (NM_213615)	TTS (NM_213615)	22275.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-70871678-4	chr6	70871167	70872167	+	967.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010121, intron 2 of 16)	intron (NM_010121, intron 2 of 16)	27152.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45700910-4	chr7	45700378	45701378	+	967.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009800, intron 2 of 8)	intron (NM_009800, intron 2 of 8)	911.0	NM_009800	12348.0	Mm.27736	NM_009800	ENSMUSG00000003273	Car11	Ca11	carbonic anhydrase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26076332-4	chr8	26075846	26076846	+	967.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207659, intron 6 of 21)	intron (NM_207659, intron 6 of 21)	-6263.0	NR_110583	76604.0	Mm.437190	NR_110583	ENSMUSG00000085437	1700047A11Rik	4930554C15Rik	RIKEN cDNA 1700047A11 gene	ncRNA	0.0	0.5	4.5	0.0	1.5	2.0
Merged-chr13-20232282-4	chr13	20231758	20232758	+	967.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 4 of 21)	intron (NM_080288, intron 4 of 21)	141751.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123891183-4	chr5	123890652	123891652	+	967.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11132.0	NM_175520	243270.0	Mm.33362	NM_175520	ENSMUSG00000049241	Hcar1	Gpr81	hydrocarboxylic acid receptor 1	protein-coding	4.0	2.0	5.5	7.0	8.5	4.0
Merged-chr7-116328038-4	chr7	116327534	116328534	+	967.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER63D|DNA|hAT-Blackjack	6156.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33524110-4	chr17	33523602	33524602	+	967.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172619)	promoter-TSS (NM_172619)	17.0	NM_001329147	224697.0	Mm.29304	NM_172619	ENSMUSG00000024299	Adamts10	9430006O18|AW045948|Adam-ts10|Adamts-10|Znmp	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10	protein-coding	0.0	4.0	4.5	5.5	3.0	2.0
Merged-chr13-109547905-3	chr13	109547410	109548410	+	967.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	Lx6|LINE|L1	223166.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.0	0.0	1.5	0.0	0.0	1.0
Merged-chr11-118398438-2	chr11	118397938	118398938	+	967.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_011150, exon 3 of 6)	exon (NM_011150, exon 3 of 6)	3521.0	NM_011150	19039.0	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-58288969-4	chr4	58288449	58289449	+	967.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037128, intron 1 of 14)	intron (NM_001037128, intron 1 of 14)	2987.0	NM_010944	18198.0	Mm.16148	NM_010944	ENSMUSG00000057280	Musk	Mdk4|Mlk|Nsk1|Nsk2|Nsk3	muscle, skeletal, receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108765001-4	chr8	108764504	108765504	+	967.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	50360.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34908845-2	chr6	34908345	34909345	+	967.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013366, intron 2 of 14)	ID_B1|SINE|B4	1986.0	NM_001013366	101240.0	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27178224-3	chr17	27177722	27178722	+	967.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20A2B_MM|LTR|ERVK	-10458.0	NM_173027	271424.0	Mm.209679	NM_173027	ENSMUSG00000024210	Ip6k3	D830007E07Rik|Ihpk3	inositol hexaphosphate kinase 3	protein-coding	2.0	2.5	10.0	5.0	15.0	15.0
Merged-chr18-62069026-4	chr18	62068522	62069522	+	967.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110959.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-42897616-4	chr9	42897146	42898146	+	967.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175481, intron 1 of 20)	CpG	46725.0	NM_175481	110637.0	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46680340-4	chr17	46679870	46680870	+	967.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102392)	promoter-TSS (NR_102392)	-83.0	NM_001277310	17256.0	Mm.329083	NM_010787	ENSMUSG00000002768	Mea1	Mea-1	male enhanced antigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34814947-2	chr11	34814447	34815447	+	967.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_027411, intron 10 of 11)	intron (NM_027411, intron 10 of 11)	18694.0	NM_027411	70385.0	Mm.194368	NM_027411	ENSMUSG00000069910	Spdl1	1700018I02Rik|2600001J17Rik|2810049B11Rik|AA409762|Ccdc99	spindle apparatus coiled-coil protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27984585-4	chr3	27984102	27985102	+	967.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 1 of 25)	intron (NM_008875, intron 1 of 25)	431.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-115163117-4	chr13	115162601	115163601	+	967.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61137.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-30749697-4	chr10	30749177	30750177	+	967.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 2 of 14)	intron (NM_001358842, intron 2 of 14)	53649.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-107921584-4	chr5	107921067	107922067	+	967.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 2 of 4)	intron (NM_026062, intron 2 of 4)	21039.0	NM_016980	100503670.0	Mm.277897	NM_016980	ENSMUSG00000058558	Rpl5	U21RNA	ribosomal protein L5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117776107-4	chr10	117775608	117776608	+	967.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134010, intron 11 of 27)	MTC|LTR|ERVL-MaLR	16597.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-102664236-4	chr13	102663744	102664744	+	967.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29303.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	2.0	10.5	4.0	2.0	10.0	9.5
Merged-chr12-44181443-3	chr12	44180931	44181931	+	967.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28637.0	NM_013760	27362.0	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	0.5	2.0	1.0	4.0	2.0	1.0
Merged-chr2-148073940-3	chr2	148073444	148074444	+	967.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26975.0	NM_010446	15376.0	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	9.5	19.5	14.5	6.0	3.5	5.0
Merged-chr3-98084023-7	chr3	98083508	98084508	+	967.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 5 of 33)	intron (NM_010928, intron 5 of 33)	70470.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-84351456-4	chr11	84350966	84351966	+	967.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133360, intron 43 of 53)	intron (NM_133360, intron 43 of 53)	156028.0	NM_133360	107476.0	Mm.31374	NM_133360	ENSMUSG00000020532	Acaca	A530025K05Rik|Acac|Acc1|Gm738	acetyl-Coenzyme A carboxylase alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43378413-4	chr7	43377916	43378916	+	967.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27075.0	NM_145581	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32773964-4	chr12	32773467	32774467	+	967.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46368.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	12.0	18.5	3.5	8.5	15.5	3.5
Merged-chr9-35541660-4	chr9	35541156	35542156	+	967.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013932)	TTS (NM_013932)	16814.0	NM_013932	30959.0	Mm.291723	NM_013932	ENSMUSG00000032101	Ddx25	AW047046|GRTH	DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-51523990-4	chr6	51523480	51524480	+	967.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127349)	promoter-TSS (NM_001127349)	77.0	NM_001127349	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	35.5	76.0	57.5	50.0	123.0	106.5
Merged-chr14-76216645-4	chr14	76216137	76217137	+	967.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34825.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9946681-4	chr3	9946183	9947183	+	967.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65902.0	NM_001272097	16592.0	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	10.0	17.0	21.0	1.0	8.0	26.5
Merged-chr19-46186727-3	chr19	46186229	46187229	+	967.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178930, intron 3 of 39)	intron (NM_178930, intron 3 of 39)	34171.0	NM_178930	107338.0	Mm.271620	NM_178930	ENSMUSG00000025224	Gbf1	1700083E03Rik|AI035702|AW049900|mKIAA0248	golgi-specific brefeldin A-resistance factor 1	protein-coding	2.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127398266-4	chr2	127397762	127398762	+	967.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26937.0	NM_001081089	215456.0	Mm.440454	NM_001081089	ENSMUSG00000046338	Gpat2	A530057A03Rik|Gm116|xGPAT1	glycerol-3-phosphate acyltransferase 2, mitochondrial	protein-coding	34.5	33.5	14.0	1.5	56.5	31.0
Merged-chr11-54693917-3	chr11	54693411	54694411	+	967.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252496, intron 28 of 28)	intron (NM_001252496, intron 28 of 28)	93792.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181240619-4	chr2	181240127	181241127	+	967.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183162, exon 2 of 19)	exon (NM_183162, exon 2 of 19)	1400.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67406582-4	chr18	67406078	67407078	+	967.654785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027130, intron 16 of 16)	MIR|SINE|MIR	15847.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	22.0	51.0	66.5	28.5	24.0	11.0
Merged-chr9-106448709-3	chr9	106448238	106449238	+	967.6333619999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029631)	promoter-TSS (NM_029631)	98.0	NM_029631	76491.0	Mm.335427	NM_029631	ENSMUSG00000042073	Abhd14b	1810013B01Rik	abhydrolase domain containing 14b	protein-coding	17.0	30.0	30.5	16.5	6.0	1.5
Merged-chr3-107097568-4	chr3	107097086	107098086	+	967.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3981.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	17.0	60.5	70.5	26.0	45.5	44.0
Merged-chr5-135667007-4	chr5	135666497	135667497	+	967.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-22148.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	1.5	4.5	6.5	0.0	8.5	2.5
Merged-chr2-153649678-4	chr2	153649259	153650259	+	967.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271744, intron 1 of 22)	CpG	310.0	NM_001271747	13436.0	Mm.89772	NM_010068	ENSMUSG00000027478	Dnmt3b	MmuIIIB	DNA methyltransferase 3B	protein-coding	0.5	3.0	0.5	5.0	3.5	0.0
Merged-chr13-80960712-4	chr13	80960201	80961201	+	967.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3373.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-26991223-4	chr3	26990714	26991714	+	967.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	162640.0	NM_007900	13605.0	Mm.261453	NM_007900	ENSMUSG00000027699	Ect2	AI528536	ect2 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21141437-4	chr5	21140947	21141947	+	967.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34832.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-21449881-4	chr17	21449380	21450380	+	967.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308323)	promoter-TSS (NM_001308323)	-494.0	NM_001308323	22709.0	Mm.293030	NM_009558	ENSMUSG00000023892	Zfp51	Zfp-51|zfec12	zinc finger protein 51	protein-coding	0.0	5.0	0.0	0.0	0.0	0.0
Merged-chr1-151572048-4	chr1	151571552	151572552	+	967.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	679.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107342595-4	chr11	107342116	107343116	+	967.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	MTC|LTR|ERVL-MaLR	128104.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40521330-4	chr9	40520828	40521828	+	967.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 1 of 20)	intron (NM_001357617, intron 1 of 20)	10055.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	8.5	5.5	15.0	4.5	5.0	8.5
Merged-chr7-127615186-4	chr7	127614699	127615699	+	967.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177226)	promoter-TSS (NM_177226)	73.0	NR_155450	320683.0	Mm.156718	NM_177226	ENSMUSG00000045639	Zfp629	9330199A09Rik|Znf629	zinc finger protein 629	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-68954068-4	chr8	68953569	68954569	+	967.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73514.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	32.5	79.0	56.0	31.5	53.0	44.5
Merged-chr7-30909037-4	chr7	30908543	30909543	+	967.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001346085, exon 5 of 11)	exon (NM_001346085, exon 5 of 11)	5278.0	NM_001346089	17136.0	Mm.241355	NM_010758	ENSMUSG00000036634	Mag	Gma|siglec-4a	myelin-associated glycoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113840630-3	chr5	113840135	113841135	+	967.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-10134.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	3.0	6.5	8.5	1.0	4.5	3.5
Merged-chr9-116166422-4	chr9	116165908	116166908	+	967.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009371, intron 1 of 7)	intron (NM_009371, intron 1 of 7)	8955.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	27.5	44.0	36.5	16.5	65.0	45.0
Merged-chr9-122785421-4	chr9	122784911	122785911	+	967.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199736, intron 12 of 19)	intron (NM_001199736, intron 12 of 19)	-20136.0	NM_001013405	382117.0	Mm.215892	NM_001013405	ENSMUSG00000046603	Tcaim	D9Ertd402e|Gm1129|TOAG-1	T cell activation inhibitor, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-117031842-3	chr13	117031340	117032340	+	967.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6324.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37489466-3	chr13	37488986	37489986	+	967.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	144141.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	25.0	64.5	34.5	0.5	10.5	3.0
Merged-chr12-88408416-3	chr12	88407910	88408910	+	967.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361601, intron 3 of 8)	BC1_Mm|scRNA|scRNA	-31087.0	NR_045888	71818.0	Mm.490789	NR_045888	ENSMUSG00000113434	3200001D21Rik	-	RIKEN cDNA 3200001D21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82751416-4	chr18	82750924	82751924	+	967.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7615.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	0.5	2.0	6.0	0.0	0.0	6.0
Merged-chr10-78471124-4	chr10	78470603	78471603	+	967.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6155.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-52120467-4	chr12	52119967	52120967	+	967.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029760, intron 3 of 10)	intron (NM_029760, intron 3 of 10)	22721.0	NM_029760	76826.0	Mm.244781	NM_029760	ENSMUSG00000035142	Nubpl	2410170E07Rik	nucleotide binding protein-like	protein-coding	0.0	0.0	0.0	0.0	1.5	2.5
Merged-chr15-73137549-4	chr15	73137073	73138073	+	967.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 3 of 18)	intron (NM_153178, intron 3 of 18)	47161.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139378053-4	chr5	139377563	139378563	+	967.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033147, exon 1 of 1)	non-coding (NR_033147, exon 1 of 1)	366.0	NR_033147	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38432959-7	chr16	38432431	38433431	+	967.5238039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134102, exon 1 of 11)	5' UTR (NM_134102, exon 1 of 11)	214.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr4-55817251-4	chr4	55816761	55817761	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-284786.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41307465-2	chr10	41306965	41307965	+	967.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4224.0	NM_133999	103199.0	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-69254591-4	chr10	69254089	69255089	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252637, intron 4 of 10)	MIRb|SINE|MIR	41395.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77185185-3	chr11	77184681	77185681	+	967.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176965, intron 1 of 17)	intron (NM_176965, intron 1 of 17)	3787.0	NM_176965	319634.0	Mm.108786	NM_176965	ENSMUSG00000050944	Efcab5	4930563A03Rik	EF-hand calcium binding domain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31219134-4	chr6	31218664	31219664	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110471)	promoter-TSS (NR_110471)	-690.0	NR_110470	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45675306-3	chr19	45674808	45675808	+	967.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15115.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	6.0	15.5	4.0	4.5	12.0	4.5
Merged-chr17-17543375-2	chr17	17542877	17543877	+	967.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 13 of 17)	RMER13A|LTR|ERVK	81112.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	0.0	0.0	1.0	0.0	2.5	2.0
Merged-chr18-80938238-4	chr18	80937737	80938737	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20A2B_MM|LTR|ERVK	-4179.0	NM_015805	50771.0	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding	2.5	2.5	1.0	2.5	2.5	0.0
Merged-chr10-98805246-4	chr10	98804746	98805746	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109396.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-83537649-4	chr9	83537157	83538157	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-10681.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	42.5	92.0	72.0	45.5	81.5	48.5
Merged-chr17-33925193-2	chr17	33924698	33925698	+	967.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025313, intron 3 of 7)	intron (NM_001025313, intron 3 of 7)	-4696.0	NM_009059	19732.0	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	0.0	2.5	2.0	1.5	3.5	0.5
Merged-chr8-80058395-2	chr8	80057895	80058895	+	967.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020259)	promoter-TSS (NM_020259)	-387.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139195980-2	chr4	139195480	139196480	+	967.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	1869.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	14.0	53.5	28.5	21.5	44.0	35.0
Merged-chr15-100633656-2	chr15	100633156	100634156	+	967.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033872, intron 2 of 3)	intron (NM_001033872, intron 2 of 3)	1903.0	NM_001285414	207818.0	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24594608-2	chr7	24594108	24595108	+	967.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023154, intron 3 of 7)	intron (NM_023154, intron 3 of 7)	-6967.0	NM_001033205	101544.0	Mm.20117	NM_001033205	ENSMUSG00000066721	Zfp575	AI326876|Znf575	zinc finger protein 575	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87023625-4	chr17	87023102	87024102	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008838, intron 2 of 5)	intron (NM_008838, intron 2 of 5)	1799.0	NM_008838	18701.0	Mm.219685	NM_008838	ENSMUSG00000024145	Pigf	-	phosphatidylinositol glycan anchor biosynthesis, class F	protein-coding	44.5	122.0	87.5	11.5	70.0	59.5
Merged-chr15-59799438-3	chr15	59798939	59799939	+	967.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4480.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45050325-4	chr14	45049843	45050843	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62232.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83044547-2	chr6	83044047	83045047	+	967.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013586, intron 4 of 13)	intron (NM_013586, intron 4 of 13)	-5164.0	NR_106007	102465630.0		NR_106007	ENSMUSG00000099035	Mir7040	Gm27489|mmu-mir-7040	microRNA 7040	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-26128598-4	chr11	26128103	26129103	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027973, intron 1 of 5)	intron (NR_027973, intron 1 of 5)	-73637.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	9.5	9.5	9.0	15.0	12.5	14.5
Merged-chr6-113441368-4	chr6	113440846	113441846	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1171.0	NM_001205025	67767.0	Mm.2053	NM_026365	ENSMUSG00000051256	Jagn1	5830427H10Rik	jagunal homolog 1	protein-coding	0.0	0.0	10.5	0.0	0.0	10.5
Merged-chr3-146118229-4	chr3	146117732	146118732	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3559.0	NM_134160	171166.0	Mm.114683	NM_134160	ENSMUSG00000036853	Mcoln3	6720490O21Rik|TRPML3|Va	mucolipin 3	protein-coding	4.0	23.0	14.5	13.0	7.5	6.5
Merged-chr5-25318855-2	chr5	25318355	25319355	+	967.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081383, intron 35 of 58)	Lx2B2|LINE|L1	72482.0	NM_001359890	231050.0	Mm.246718	NM_144908	ENSMUSG00000038072	Galnt11	A430075I06Rik|AI648252|E430002F06Rik	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106154169-2	chr11	106153669	106154669	+	967.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011947, exon 16 of 16)	exon (NM_011947, exon 16 of 16)	5758.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27565308-4	chr17	27564825	27565825	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002895, intron 1 of 4)	intron (NM_001002895, intron 1 of 4)	402.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37172007-2	chr19	37171507	37172507	+	967.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198300, intron 2 of 10)	(CA)n|Simple_repeat|Simple_repeat	-1836.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-106316655-4	chr4	106316148	106317148	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183225, exon 1 of 68)	exon (NM_183225, exon 1 of 68)	435.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	1.0	1.5	6.0	6.0	1.0	9.0
Merged-chr9-45265482-2	chr9	45264982	45265982	+	967.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_136903, intron 3 of 5)	intron (NR_136903, intron 3 of 5)	1225.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-20132951-3	chr3	20132472	20133472	+	967.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355261, intron 5 of 7)	intron (NM_001355261, intron 5 of 7)	22144.0	NM_001355261	27357.0	Mm.6375	NM_013755	ENSMUSG00000019528	Gyg	AU017667|GN1|Gyg1	glycogenin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103515241-4	chr15	103514748	103515748	+	967.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001285890, exon 1 of 15)	5' UTR (NM_001285890, exon 1 of 15)	271.0	NM_001285890	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106678396-4	chr1	106677872	106678872	+	967.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009741, intron 1 of 1)	L1MB3|LINE|L1	35918.0	NM_009741	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83656162-4	chr6	83655669	83656669	+	967.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016751)	promoter-TSS (NM_016751)	-53.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	26.5	50.0	53.0	43.0	87.0	60.5
Merged-chr14-21654033-4	chr14	21653535	21654535	+	967.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017479, intron 12 of 16)	MTD|LTR|ERVL-MaLR	60541.0	NM_001013826	435391.0	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110102099-4	chr5	110101600	110102600	+	967.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281812, intron 4 of 6)	intron (NM_001281812, intron 4 of 6)	1541.0	NM_001281812	403178.0	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-166459093-4	chr1	166458593	166459593	+	967.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3605.0	NR_151518	102636226.0	Mm.412602	NR_151518		Gm33354	-	predicted gene, 33354	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11771024-2	chr19	11770534	11771534	+	967.4500119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_025606, intron 2 of 3)	intron (NM_025606, intron 2 of 3)	619.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	3.5	11.0	14.0	9.5	13.0	5.0
Merged-chr11-117707025-4	chr11	117706520	117707520	+	967.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 3 of 21)	MTC|LTR|ERVL-MaLR	52731.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-115458263-4	chr9	115457699	115458699	+	967.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76380.0	NR_130329	100316675.0		NR_130329	ENSMUSG00000080409	Mir467h	Mirn467h|mmu-mir-467h	microRNA 467h	ncRNA	32.0	31.5	34.5	12.5	1.5	13.0
Merged-chr1-9546305-6	chr1	9545796	9546796	+	967.422241	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021511, exon 1 of 1)	exon (NM_021511, exon 1 of 1)	888.0	NM_021511	59014.0	Mm.29061	NM_021511	ENSMUSG00000061024	Rrs1	5730466A07Rik|AA415037|D1Ertd701e|Rrr	ribosome biogenesis regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67359786-4	chr17	67359270	67360270	+	967.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5279.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-89599507-4	chr10	89599035	89600035	+	967.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182959, intron 3 of 11)	intron (NM_182959, intron 3 of 11)	280.0	NM_001310710	216227.0	Mm.233921	NM_182959	ENSMUSG00000019935	Slc17a8	BC042593|Vglut3	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8	protein-coding	8.5	15.0	9.5	1.0	10.0	6.5
Merged-chr10-121290177-3	chr10	121289679	121290679	+	967.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361015, intron 8 of 12)	intron (NM_001361015, intron 8 of 12)	21217.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	3.0	1.0	0.0	6.0	2.5	1.5
Merged-chr18-34889053-4	chr18	34888597	34889597	+	967.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27890.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105798499-4	chr5	105797986	105798986	+	967.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122768, intron 2 of 2)	L2c|LINE|L2	-78082.0	NR_030777	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	14.5	16.5	0.5	10.0	4.0	0.0
Merged-chr17-70989678-4	chr17	70989183	70990183	+	967.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023402, intron 1 of 3)	intron (NM_023402, intron 1 of 3)	833.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120948487-4	chr11	120948012	120949012	+	967.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030696)	promoter-TSS (NM_030696)	28.0	NM_030696	80879.0	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84985943-4	chr15	84985433	84986433	+	967.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	2038.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113031598-4	chr12	113031089	113032089	+	967.3500369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081170, intron 1 of 23)	ORR1F|LTR|ERVL-MaLR	17081.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76768759-4	chr16	76768255	76769255	+	967.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155453, intron 1 of 3)	intron (NR_155453, intron 1 of 3)	10337.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-80949889-2	chr8	80949389	80950389	+	967.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	65017.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	80.5	180.0	103.0	102.0	248.0	120.5
Merged-chr1-152841390-2	chr1	152840890	152841890	+	967.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005507, intron 18 of 21)	intron (NM_001005507, intron 18 of 21)	41237.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160578919-2	chr2	160578419	160579419	+	967.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66978.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-59198401-2	chr19	59197901	59198901	+	967.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21247.0	NM_207261	332396.0	Mm.329947	NM_207261	ENSMUSG00000040901	Kcnk18	Gm781|Tresk|Tresk-2|Trik	potassium channel, subfamily K, member 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105640971-3	chr4	105640433	105641433	+	967.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	483586.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	3.5	3.0	1.5	2.0	14.5	6.0
Merged-chr1-135660311-3	chr1	135659801	135660801	+	967.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59762.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-80822366-4	chr1	80821889	80822889	+	967.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63836.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35174291-3	chr2	35173784	35174784	+	967.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012018, intron 39 of 43)	MTD|LTR|ERVL-MaLR	26836.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36025696-3	chr18	36025201	36026201	+	967.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167891, intron 5 of 9)	L2|LINE|L2	60871.0	NR_110349	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51710831-3	chr3	51710371	51711371	+	967.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	49692.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-47217470-4	chr13	47216959	47217959	+	967.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 2 of 7)	intron (NM_146042, intron 2 of 7)	23456.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	26.5	49.5	21.5	12.5	30.0	28.0
Merged-chr12-46818843-7	chr12	46818317	46819317	+	967.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021361)	promoter-TSS (NM_021361)	-42.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57559186-3	chr16	57558693	57559693	+	967.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	9951.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-43369377-3	chr11	43368871	43369871	+	967.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	5090.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-93701696-3	chr14	93701194	93702194	+	967.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081377, intron 2 of 4)	intron (NM_001081377, intron 2 of 4)	188975.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	18.0	31.5	8.0	1.0	3.0	7.5
Merged-chr7-128633372-4	chr7	128632870	128633870	+	967.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178641, intron 1 of 19)	intron (NM_178641, intron 1 of 19)	22005.0	NM_178641	101490.0	Mm.490344	NM_178641	ENSMUSG00000042105	Inpp5f	5830435P03Rik|AI115354|AW561896|SAC2|cI-27|hSAC2|mKIAA0966	inositol polyphosphate-5-phosphatase F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90259957-4	chr16	90259466	90260466	+	967.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346799, intron 4 of 19)	intron (NM_001346799, intron 4 of 19)	24520.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19122420-4	chr10	19121899	19122899	+	967.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19350.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	34.5	32.0	10.5	39.5	56.0	30.0
Merged-chr12-73632962-4	chr12	73632455	73633455	+	967.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	48159.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	7.5	0.0	7.0	0.5	11.0	3.5
Merged-chr8-69089967-4	chr8	69089462	69090462	+	967.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153054)	promoter-TSS (NM_153054)	-740.0	NM_153054	110877.0	Mm.19301	NM_153054	ENSMUSG00000036330	Slc18a1	4832416I10Rik|Vat1|Vmat1	solute carrier family 18 (vesicular monoamine), member 1	protein-coding	45.5	80.5	52.0	38.5	76.5	49.0
Merged-chr5-90685965-4	chr5	90685457	90686457	+	967.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45430.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	2.0	7.5	4.5	4.5	5.0	5.0
Merged-chr11-98217138-4	chr11	98216623	98217623	+	967.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026952, intron 2 of 12)	intron (NM_026952, intron 2 of 12)	13818.0	NM_001109626	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8792571-4	chr10	8792066	8793066	+	967.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 4 of 19)	intron (NM_175155, intron 4 of 19)	93504.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.0	0.0	0.5	0.0	0.0	2.0
Merged-chr11-110268661-4	chr11	110268159	110269159	+	967.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_147219)	TTS (NM_147219)	-16883.0	NM_001166557	76184.0	Mm.159704	NM_147218	ENSMUSG00000044749	Abca6	6330565N06Rik	ATP-binding cassette, sub-family A (ABC1), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12135199-4	chr17	12134768	12135768	+	967.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026644, intron 1 of 8)	intron (NM_026644, intron 1 of 8)	15984.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137747621-3	chr5	137747109	137748109	+	967.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029805, exon 2 of 6)	exon (NM_029805, exon 2 of 6)	1640.0	NM_029805	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103718448-2	chr14	103717948	103718948	+	967.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19016.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6309618-2	chr19	6309118	6310118	+	967.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033342, intron 3 of 36)	intron (NM_001033342, intron 3 of 36)	3161.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-177982774-4	chr1	177982268	177983268	+	967.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8630.0	NR_155538	545391.0	Mm.442974	NM_001034899	ENSMUSG00000091476	Gm16432	EG545391|EG666250	predicted gene 16432	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35220765-4	chr17	35220249	35221249	+	967.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010909, exon 4 of 4)	exon (NM_010909, exon 4 of 4)	-14261.0	NM_001347351	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	3.0	20.0	4.0	6.0	44.0	5.0
Merged-chr12-99647087-4	chr12	99646581	99647581	+	967.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR50A|LTR|ERVK	-19107.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23774281-4	chr17	23773781	23774781	+	967.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2679.0	NM_001357994	224613.0	Mm.328835	NM_153791	ENSMUSG00000040097	Flywch1	E030034P13Rik|mKIAA1552	FLYWCH-type zinc finger 1	protein-coding	1.0	14.5	9.5	0.0	10.0	2.5
Merged-chr4-135829198-4	chr4	135828639	135829639	+	967.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-26932.0	NM_001284196	14105.0	Mm.10229	NM_010178	ENSMUSG00000028676	Srsf10	FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124299055-4	chr2	124298604	124299604	+	967.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 3 of 20)	intron (NM_001290997, intron 3 of 20)	-76746.0	NR_040612	75946.0	Mm.415059	NR_040612	ENSMUSG00000086954	4930583P06Rik	-	RIKEN cDNA 4930583P06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-29944139-4	chr16	29943622	29944622	+	967.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35002.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-67554044-3	chr3	67553554	67554554	+	967.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28714.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	0.0	11.0	6.0	0.0	0.0	2.5
Merged-chr17-29837664-4	chr17	29837208	29838208	+	967.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081160, intron 13 of 15)	intron (NM_001081160, intron 13 of 15)	50174.0	NM_001081160	74762.0	Mm.40901	NM_001081160	ENSMUSG00000043557	Mdga1	1200011I03Rik|GPIM|Mamdc3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding	0.5	0.0	0.0	0.0	1.5	0.5
Merged-chr5-65120089-4	chr5	65119563	65120563	+	967.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347355, intron 1 of 10)	ORR1D2|LTR|ERVL-MaLR	-11168.0	NM_001359401	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-42096251-4	chr13	42095746	42096746	+	967.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	44225.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116193097-4	chr6	116192638	116193638	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 1 of 5)	CpG	236.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33180125-4	chr16	33179599	33180599	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4972.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55874097-4	chr14	55873608	55874608	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001040072, exon 8 of 8)	3' UTR (NM_001040072, exon 8 of 8)	10148.0	NM_019820	56410.0	Mm.97163	NM_019820	ENSMUSG00000040380	Cbln3	-	cerebellin 3 precursor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27451459-4	chr7	27450966	27451966	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290525)	promoter-TSS (NM_001290525)	-952.0	NM_001290525	233016.0	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	6.0	23.5	9.5	6.0	8.5	8.5
Merged-chr18-5101533-4	chr18	5101056	5102056	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347449, intron 22 of 30)	MRLTR33|LTR|ERVK	54967.0	NM_001347449	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34126047-4	chr7	34125535	34126535	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207212, intron 1 of 7)	ORR1E|LTR|ERVL-MaLR	7233.0	NM_207212	101543.0	Mm.422738	NM_207212	ENSMUSG00000036459	Wtip	-	WT1-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119418234-3	chr9	119417741	119418741	+	967.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007397, intron 1 of 9)	intron (NM_007397, intron 1 of 9)	16063.0	NM_001313757	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	29.5	49.0	38.5	10.5	16.0	7.0
Merged-chr15-79455015-4	chr15	79454511	79455511	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12868.0	NM_001359863	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60817040-4	chr10	60816543	60817543	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029770, intron 1 of 16)	intron (NM_029770, intron 1 of 16)	14538.0	NM_029770	107449.0	Mm.290433	NM_029770	ENSMUSG00000020099	Unc5b	6330415E02Rik|A630020F16|D10Bwg0792e|Unc5h2	unc-5 netrin receptor B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-61994465-4	chr12	61993956	61994956	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR3-int|LTR|ERVK	471289.0	NM_001310586	238205.0	Mm.28802	NM_178714	ENSMUSG00000035653	Lrfn5	AI427653|AI604817|C130061B21|mKIAA4208	leucine rich repeat and fibronectin type III domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-67041998-4	chr6	67041495	67042495	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040278, intron 1 of 6)	intron (NR_040278, intron 1 of 6)	-4588.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137373896-4	chr4	137373397	137374397	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16138.0	NM_001243769	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	23.5	96.0	23.0	19.0	81.5	42.0
Merged-chr1-105863253-3	chr1	105862815	105863815	+	967.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82592.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4600129-4	chr11	4599626	4600626	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-5311.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-48862099-3	chr13	48861602	48862602	+	967.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011078, intron 1 of 21)	ORR1F|LTR|ERVL-MaLR	8783.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-3025851-2	chr9	3025352	3026352	+	967.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	12891.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9428135-2	chr13	9427635	9428635	+	967.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	151610.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17527545-3	chr10	17527052	17528052	+	967.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-195676.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.0	0.0	3.0	0.0	0.0	0.0
Merged-chr12-35579030-4	chr12	35578535	35579535	+	967.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44046.0	NM_001314027	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	1.0	0.0	1.0	1.0	0.0	2.5
Merged-chr15-96568498-4	chr15	96568000	96569000	+	967.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR37-int|LTR|ERV1	73462.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100757744-4	chr11	100757259	100758259	+	967.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081194, exon 2 of 17)	exon (NM_001081194, exon 2 of 17)	2019.0	NM_001081194	380728.0	Mm.297539	NM_001081194	ENSMUSG00000035355	Kcnh4	BEC2	potassium voltage-gated channel, subfamily H (eag-related), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35114723-4	chr9	35114232	35115232	+	967.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-1996.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118857240-3	chr10	118856748	118857748	+	967.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11655.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	8.0	19.0	9.5	8.5	20.5	24.0
Merged-chr2-12318902-3	chr2	12318424	12319424	+	967.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16980.0	NM_001001309	241226.0	Mm.329997	NM_001001309	ENSMUSG00000026768	Itga8	AI447669	integrin alpha 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10434295-4	chr16	10433816	10434816	+	967.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013778, intron 1 of 6)	intron (NM_001013778, intron 1 of 6)	13046.0	NM_001359069	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21569332-7	chr11	21568851	21569851	+	967.095215	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316675, intron 1 of 8)	intron (NM_001316675, intron 1 of 8)	2583.0	NM_008618	17449.0	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	90.0	217.5	135.5	66.0	177.0	164.0
Merged-chr8-75071854-4	chr8	75071464	75072464	+	967.09375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21654.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.0	0.5	7.0	4.5	0.0	2.5
Merged-chr11-97546089-4	chr11	97545604	97546604	+	967.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 3 of 19)	(CA)n|Simple_repeat|Simple_repeat	29022.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125729956-4	chr8	125729446	125730446	+	967.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-4257.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84042283-4	chr8	84041778	84042778	+	967.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_173184)	TTS (NM_173184)	297.0	NM_016671	50931.0	Mm.38386	NM_016671	ENSMUSG00000005465	Il27ra	CRL1|IL-27R|Tccr|WSX-1|Wsx1|zcytor1	interleukin 27 receptor, alpha	protein-coding	4.5	4.5	2.0	1.0	2.0	5.0
Merged-chr5-113221379-2	chr5	113220879	113221879	+	967.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5530.0	NM_001033428	333048.0	Mm.332586	NM_001033428	ENSMUSG00000066964	Tmem211	Gm854	transmembrane protein 211	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85710365-4	chr11	85709865	85710865	+	967.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045875, intron 1 of 5)	intron (NR_045875, intron 1 of 5)	9379.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111446456-4	chr10	111445958	111446958	+	967.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26769.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-127271361-4	chr1	127270866	127271866	+	967.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 2 of 17)	intron (NM_145128, intron 2 of 17)	66380.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3350526-4	chr12	3350006	3351006	+	967.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14626.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-9908131-4	chr10	9907641	9908641	+	967.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7101.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-22085586-4	chr14	22085082	22086082	+	967.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 2 of 6)	intron (NM_028275, intron 2 of 6)	65870.0	NM_028275	76633.0	Mm.489898	NM_028275	ENSMUSG00000063458	Lrmda	1700112E06Rik|2700009F18Rik	leucine rich melanocyte differentiation associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-9677131-4	chr10	9676631	9677631	+	967.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1923.0	NM_177271	320825.0	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding	0.0	5.5	0.5	0.0	0.0	1.0
Merged-chr1-59608591-4	chr1	59608094	59609094	+	967.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013771, intron 13 of 19)	intron (NM_001013771, intron 13 of 19)	62240.0	NM_009460	22218.0	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	0.0	21.5	17.0	0.0	9.0	14.0
Merged-chr1-128548418-3	chr1	128547898	128548898	+	967.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43901.0	NM_009911	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	10.5	17.0	8.0	2.5	3.5	7.5
Merged-chr10-22070352-3	chr10	22069879	22070879	+	967.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2300.0	NM_053264	114671.0	Mm.288194	NM_053264	ENSMUSG00000069712	4930444G20Rik	-	RIKEN cDNA 4930444G20 gene	protein-coding	7.5	4.0	4.0	2.5	0.0	0.5
Merged-chr14-75075428-4	chr14	75074923	75075923	+	967.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	55460.0	NM_027581	70859.0	Mm.320289	NM_027581	ENSMUSG00000021997	Lrrc63	4921509B22Rik	leucine rich repeat containing 63	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101453446-4	chr15	101452900	101453900	+	967.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025487, intron 4 of 4)	intron (NM_025487, intron 4 of 4)	5655.0	NM_025487	66322.0	Mm.158111	NM_025487	ENSMUSG00000063971	Krt88	1700011A15Rik	keratin 88	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115473819-4	chr11	115473299	115474299	+	967.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001080934, exon 4 of 4)	3' UTR (NM_001080934, exon 4 of 4)	-1868.0	NM_177778	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	1.0	3.5	0.0	1.0	5.0	0.5
Merged-chr1-157008277-4	chr1	157007737	157008737	+	967.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68611.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	58.0	116.5	84.0	126.0	76.5	113.0
Merged-chr15-79039107-4	chr15	79038607	79039607	+	967.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013847)	TTS (NM_013847)	-2778.0	NM_015738	14429.0	Mm.390805	NM_015738	ENSMUSG00000114755	Galr3	Galnr3	galanin receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-7457642-4	chr4	7457161	7458161	+	967.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103027.0	NR_040645	71510.0	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95826119-4	chr15	95825596	95826596	+	967.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155276, intron 1 of 1)	intron (NR_155276, intron 1 of 1)	3976.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51101601-4	chr13	51101092	51102092	+	967.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029463)	promoter-TSS (NR_029463)	45.0	NM_001283029	20729.0	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20642622-4	chr9	20642085	20643085	+	967.0238039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153857)	promoter-TSS (NR_153857)	-132.0	NM_001361025	66177.0	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-5191261-2	chr10	5190761	5191761	+	967.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001079686, intron 2 of 54)	intron (NM_001079686, intron 2 of 54)	3446.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91112694-3	chr2	91112193	91113193	+	967.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011355, intron 2 of 4)	intron (NM_011355, intron 2 of 4)	-5451.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	10.0	43.5	34.5	14.0	15.0	14.5
Merged-chr3-136784000-2	chr3	136783500	136784500	+	967.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	113934.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115646690-2	chr11	115646190	115647190	+	967.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 5 of 5)	intron (NM_001313936, intron 5 of 5)	-18395.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-28481170-4	chr13	28480658	28481658	+	967.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045054, intron 7 of 7)	intron (NR_045054, intron 7 of 7)	229715.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6290288-2	chr11	6289788	6290788	+	967.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1309.0	NM_010956	18293.0	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	1.0	0.0	0.0	1.0	0.0	0.0
Merged-chr7-49396630-1	chr7	49396130	49397130	+	967.0	f0_c57.idr	intron (NM_175272, intron 3 of 37)	B2_Mm2|SINE|B2	150441.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-66933743-3	chr13	66933263	66934263	+	967.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025547)	promoter-TSS (NM_025547)	-691.0	NM_025547	66410.0	Mm.347939	NM_025547	ENSMUSG00000021519	Mterf3	2410017I18Rik|Mterfd1	mitochondrial transcription termination factor 3	protein-coding	2.0	2.0	0.5	4.5	11.5	8.5
Merged-chr1-64052567-3	chr1	64052059	64053059	+	967.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033563, intron 2 of 3)	intron (NM_033563, intron 2 of 3)	-10058.0	NR_105864	102466760.0		NR_105864	ENSMUSG00000098487	Mir6899	Gm27384|mmu-mir-6899	microRNA 6899	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122614936-4	chr10	122614436	122615436	+	967.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33403.0	NR_105839	102465223.0		NR_105839	ENSMUSG00000098522	Mir6412	Gm27364|mmu-mir-6412	microRNA 6412	ncRNA	12.5	38.0	29.5	12.0	35.5	31.0
Merged-chr1-184741496-1	chr1	184740996	184741996	+	967.0	f1_balb.idr	Intergenic	Intergenic	-9003.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	2.5	3.5	0.0	0.0	0.0	0.5
Merged-chr1-164138837-4	chr1	164138335	164139335	+	967.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011347, intron 9 of 15)	intron (NM_011347, intron 9 of 15)	-13000.0	NM_007976	14067.0	Mm.12900	NM_007976	ENSMUSG00000026579	F5	AI173222|Cf-5|Cf5	coagulation factor V	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39242880-2	chr6	39242380	39243380	+	967.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-36107.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123859374-6	chr8	123858790	123859790	+	967.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028536, exon 2 of 4)	exon (NM_028536, exon 2 of 4)	919.0	NM_028536	73420.0	Mm.157746	NM_028536	ENSMUSG00000031971	Ccsap	1700054N08Rik|AI853424	centriole, cilia and spindle associated protein	protein-coding	41.0	58.0	65.0	74.0	69.0	58.5
Merged-chr10-81413073-2	chr10	81412573	81413573	+	967.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 2 of 8)	intron (NM_026756, intron 2 of 8)	3224.0	NR_106141	102465778.0		NR_106141	ENSMUSG00000105379	Mir1191b	mmu-mir-1191b	microRNA 1191b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10968184-2	chr16	10967684	10968684	+	967.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	ID_B1|SINE|B4	24937.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172335343-3	chr1	172334831	172335831	+	967.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5879.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	57.0	139.0	96.0	105.0	249.5	212.5
Merged-chr9-118714875-1	chr9	118714375	118715375	+	967.0	f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	3183.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	13.0	17.5	7.5	0.0	18.0	9.5
Merged-chr1-9631182-4	chr1	9630690	9631690	+	967.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015470)	promoter-TSS (NR_015470)	-98.0	NR_015470	72481.0	Mm.279818	NR_015470	ENSMUSG00000079671	2610203C22Rik	2310007M24Rik	RIKEN cDNA 2610203C22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-110266928-2	chr8	110266428	110267428	+	967.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172916)	promoter-TSS (NM_172916)	-49.0	NM_172916	244653.0	Mm.444803	NM_172916	ENSMUSG00000059854	Hydin	1700034M11Rik|4930545D19Rik|4932703P14|672398|A830061H17|AC069308.21gm4|Gm9558|hy-3|hy3|hyrh	HYDIN, axonemal central pair apparatus protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125106428-3	chr5	125105957	125106957	+	967.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011424, intron 5 of 46)	intron (NM_011424, intron 5 of 46)	72757.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0.5	0.0	2.0	3.0	0.0	0.0
Merged-chr2-145739159-2	chr2	145738659	145739659	+	967.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 3 of 3)	URR1B|DNA|hAT-Charlie	37964.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111648542-2	chr12	111648042	111649042	+	967.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022801, intron 15 of 15)	B3|SINE|B2	23796.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75674715-2	chr10	75674215	75675215	+	967.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172549, intron 29 of 36)	intron (NM_172549, intron 29 of 36)	-30707.0	NM_027890	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8511207-4	chr12	8510723	8511723	+	967.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H2|LTR|ERVL-MaLR	-11214.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	36.0	100.5	57.0	8.5	16.5	13.0
Merged-chr8-37791780-1	chr8	37791280	37792280	+	967.0	f0_balb.idr	intron (NM_145841, intron 2 of 7)	Lx6|LINE|L1	460422.0	NR_029884	723860.0		NR_029884	ENSMUSG00000065457	Mir383	Mirn383|mir-383|mmu-mir-383	microRNA 383	ncRNA	0.0	5.0	2.5	12.0	0.0	1.0
Merged-chr6-21959521-2	chr6	21959021	21960021	+	967.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311061, intron 4 of 11)	Lx9|LINE|L1	9906.0	NM_023626	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99516401-1	chr5	99515901	99516901	+	967.0	f0_balb.idr	intron (NR_030692, intron 2 of 3)	MTD|LTR|ERVL-MaLR	212659.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134231647-4	chr5	134231124	134232124	+	966.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1999.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102566628-4	chr4	102566116	102567116	+	966.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-3444.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	3.5	7.0	1.5	8.5	6.5	3.0
Merged-chr4-115785000-4	chr4	115784448	115785448	+	966.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_181040, exon 1 of 9)	5' UTR (NM_181040, exon 1 of 9)	134.0	NM_181040	230649.0	Mm.109600	NM_181040	ENSMUSG00000028710	Atpaf1	6330547J17Rik|AI593252|ATP11|ATP11p	ATP synthase mitochondrial F1 complex assembly factor 1	protein-coding	14.5	9.5	13.5	14.5	9.5	13.5
Merged-chr15-95791743-4	chr15	95791281	95792281	+	966.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	938.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111471334-4	chr10	111470819	111471819	+	966.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-1908.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-46927265-4	chr1	46926766	46927766	+	966.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1490.0	NM_001356417	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	33.0	59.0	46.0	53.5	80.0	70.5
Merged-chr4-137879788-4	chr4	137879245	137880245	+	966.9166869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	17508.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	25.5	15.5	32.5	2.0	2.0	7.0
Merged-chr19-60999825-3	chr19	60999346	61000346	+	966.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 2 of 15)	intron (NM_018869, intron 2 of 15)	110097.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	8.5	28.0	20.5	16.5	18.5	18.0
Merged-chr13-114818823-4	chr13	114818327	114819327	+	966.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113375, intron 1 of 5)	intron (NM_001113375, intron 1 of 5)	590.0	NM_001113374	17434.0	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141558389-4	chr7	141557885	141558885	+	966.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-3795.0	NM_001357068	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-28405367-4	chr15	28404872	28405872	+	966.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133365, intron 61 of 78)	intron (NM_133365, intron 61 of 78)	201606.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-8736168-4	chr16	8735656	8736656	+	966.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003918, intron 1 of 30)	intron (NM_001003918, intron 1 of 30)	2186.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33138685-4	chr2	33138163	33139163	+	966.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290570, intron 16 of 16)	intron (NM_001290570, intron 16 of 16)	-7227.0	NM_001355201	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99254024-4	chr5	99253505	99254505	+	966.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1078.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25249109-4	chr12	25248615	25249615	+	966.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	119941.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	3.0	25.5	7.0	15.5	4.0	6.5
Merged-chr5-139668662-4	chr5	139668152	139669152	+	966.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67681.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	0.0	12.5	3.5	0.0	21.5	8.0
Merged-chr9-48161982-4	chr9	48161477	48162477	+	966.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR67B|LTR|ERVL	178921.0	NM_030069	78252.0	Mm.31626	NM_030069	ENSMUSG00000032028	Nxpe2	4432416J03Rik|AI323362|Fam55b	neurexophilin and PC-esterase domain family, member 2	protein-coding	9.5	14.0	3.5	11.5	17.0	8.0
Merged-chr5-146824739-4	chr5	146824247	146825247	+	966.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8143.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	64.0	111.0	108.0	17.0	59.0	44.0
Merged-chr19-44384650-4	chr19	44384155	44385155	+	966.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	23054.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	7.0	6.5	12.0	9.0	15.5	5.5
Merged-chr17-80130890-4	chr17	80130387	80131387	+	966.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176963, intron 1 of 6)	intron (NM_176963, intron 1 of 6)	3416.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17871139-4	chr17	17870687	17871687	+	966.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	12752.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	103.0	257.5	157.0	56.0	203.5	118.5
Merged-chr9-103337157-4	chr9	103336657	103337657	+	966.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176979, intron 19 of 27)	intron (NM_176979, intron 19 of 27)	27822.0	NM_001134427	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	0.0	12.5	2.0	0.0	3.0	2.5
Merged-chr13-94322646-4	chr13	94322126	94323126	+	966.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	36297.0	NR_045619	328309.0	Mm.174191	NM_183205	ENSMUSG00000042857	Gm9776	A530089L17	predicted gene 9776	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107149187-2	chr3	107148687	107149687	+	966.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33956.0	NM_001081140	242151.0	Mm.245155	NM_001081140	ENSMUSG00000042861	Kcna10	Gm1962|Kcna8|Kv1.8	potassium voltage-gated channel, shaker-related subfamily, member 10	protein-coding	0.0	6.0	0.0	0.0	3.0	0.0
Merged-chr1-88230816-2	chr1	88230316	88231316	+	966.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 5 of 41)	intron (NM_001281466, intron 5 of 41)	3796.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-30963279-2	chr17	30962779	30963779	+	966.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177465, intron 2 of 21)	intron (NM_177465, intron 2 of 21)	8596.0	NM_177465	52020.0	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-58691447-4	chr3	58690967	58691967	+	966.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009174, exon 1 of 2)	exon (NM_009174, exon 1 of 2)	921.0	NM_009174	20439.0	Mm.2847	NM_009174	ENSMUSG00000036432	Siah2	AA415433|Sinh2	siah E3 ubiquitin protein ligase 2	protein-coding	9.5	13.0	16.5	7.5	17.0	19.0
Merged-chr2-167293509-4	chr2	167293030	167294030	+	966.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52993.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102432914-4	chr12	102432415	102433415	+	966.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	intron (NM_011175, intron 1 of 13)	6898.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	21.0	22.5	20.5	20.5	22.5	19.0
Merged-chr8-70720835-4	chr8	70720283	70721283	+	966.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195253, intron 2 of 3)	RLTR25B|LTR|ERVK	2240.0	NM_001195253	100502950.0	Mm.52981	NM_001195253	ENSMUSG00000095026	Gm3336	100041434|2410018E23Rik	predicted gene 3336	protein-coding	15.0	30.5	40.0	9.0	1.0	0.5
Merged-chr2-29632387-4	chr2	29631880	29632880	+	966.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	L1MB3|LINE|L1	12660.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	3.5	0.0	0.0	1.0
Merged-chr15-85131999-4	chr15	85131513	85132513	+	966.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080470)	promoter-TSS (NM_080470)	-56.0	NM_080470	140557.0	Mm.182737	NM_080470	ENSMUSG00000022432	Smc1b	SMC-1B|SMC1beta|Smc1l2	structural maintenance of chromosomes 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31934641-2	chr16	31934141	31935141	+	966.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_172822, intron 1 of 2)	intron (NM_172822, intron 1 of 2)	790.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-116951549-4	chr13	116951056	116952056	+	966.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	73960.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	15.5	39.5	30.0	8.0	32.5	19.0
Merged-chr9-35175922-5	chr9	35175339	35176339	+	966.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027030, exon 1 of 6)	exon (NM_027030, exon 1 of 6)	148.0	NM_027030	69305.0	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	92.0	151.0	124.5	45.5	172.0	98.0
Merged-chr2-181276217-4	chr2	181275723	181276723	+	966.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198169, intron 2 of 9)	intron (NM_198169, intron 2 of 9)	11743.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-43303194-4	chr9	43302710	43303710	+	966.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-7553.0	NM_023655	72169.0	Mm.273277	NM_023655	ENSMUSG00000032013	Trim29	1110047J21Rik|2810431N19Rik|4732461M22Rik|AI119726	tripartite motif-containing 29	protein-coding	2.5	4.5	4.0	1.5	18.5	6.0
Merged-chr1-37357328-4	chr1	37356824	37357824	+	966.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	-11893.0	NM_172971	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-10459348-4	chr10	10458842	10459842	+	966.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	12972.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	161.0	439.5	231.0	148.0	268.0	201.0
Merged-chr1-180293270-4	chr1	180292769	180293769	+	966.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36969.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32489536-4	chr11	32489030	32490030	+	966.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361561, intron 1 of 1)	B4A|SINE|B4	34160.0	NM_173784	327900.0	Mm.260956	NM_173784	ENSMUSG00000044949	Ubtd2	4930571L24|9630054F20Rik|AI645720	ubiquitin domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135575667-3	chr5	135575164	135576164	+	966.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2615.0	NM_001356630	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	0.0	0.0	6.0	5.5	16.0	0.0
Merged-chr4-149462413-3	chr4	149461917	149462917	+	966.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-7449.0	NM_022020	63954.0	Mm.46023	NM_022020	ENSMUSG00000028996	Rbp7	1110002J23Rik|CRBP-III	retinol binding protein 7, cellular	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29488707-3	chr17	29488206	29489206	+	966.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2339.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	48.5	137.5	86.5	55.0	135.0	92.0
Merged-chr10-121034031-4	chr10	121033542	121034542	+	966.770874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011915)	promoter-TSS (NM_011915)	38.0	NM_011915	24117.0	Mm.32831	NM_011915	ENSMUSG00000020218	Wif1	AW107799|WIF-1	Wnt inhibitory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81416964-4	chr10	81416470	81417470	+	966.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106141)	promoter-TSS (NR_106141)	-673.0	NR_106141	102465778.0		NR_106141	ENSMUSG00000105379	Mir1191b	mmu-mir-1191b	microRNA 1191b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117629414-4	chr10	117628947	117629947	+	966.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027468)	promoter-TSS (NM_027468)	-53.0	NM_027468	70574.0	Mm.339332	NM_027468	ENSMUSG00000020183	Cpm	1110060I01Rik|5730456K23Rik|AA589379|E030045M14Rik	carboxypeptidase M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134705901-4	chr6	134705394	134706394	+	966.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170479, intron 3 of 3)	intron (NM_001170479, intron 3 of 3)	64954.0	NM_026371	67774.0	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	50.5	122.5	90.5	43.0	82.0	61.0
Merged-chr15-100228344-4	chr15	100227861	100228861	+	966.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007497, intron 1 of 6)	CpG	502.0	NM_007497	11908.0	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	16.5	37.0	41.5	13.0	25.0	26.0
Merged-chr1-72106297-4	chr1	72105700	72106700	+	966.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101005.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8702007-4	chr11	8701537	8702537	+	966.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37502.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	13.5	25.0	20.0	1.0	16.0	14.0
Merged-chr9-123850250-4	chr9	123849763	123850763	+	966.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148925, intron 1 of 18)	intron (NM_148925, intron 1 of 18)	1398.0	NM_148925	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125378320-4	chr6	125377843	125378843	+	966.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198604, intron 3 of 16)	intron (NM_198604, intron 3 of 16)	2161.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	1.0	3.5	1.0	0.0	0.0	0.5
Merged-chr1-62724676-4	chr1	62724174	62725174	+	966.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	21357.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75802108-4	chr2	75801610	75802610	+	966.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30067.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-67778665-3	chr13	67778171	67779171	+	966.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-1022.0	NM_028402	72958.0	Mm.53849	NM_028402	ENSMUSG00000090659	Zfp493	2900054J07Rik|Rslcan12	zinc finger protein 493	protein-coding	40.5	171.5	105.0	19.0	50.0	65.0
Merged-chr7-114016449-4	chr7	114015957	114016957	+	966.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145584, intron 6 of 15)	intron (NM_145584, intron 6 of 15)	101324.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	8.5	3.5	2.5	1.5	2.5	9.5
Merged-chr12-35153202-3	chr12	35152706	35153706	+	966.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41691.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	0.0	0.0	1.5	1.5	24.0	3.5
Merged-chr7-118488334-4	chr7	118487863	118488863	+	966.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033380, exon 1 of 1)	3' UTR (NM_001033380, exon 1 of 1)	3612.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	51.5	113.0	68.5	51.0	81.0	90.0
Merged-chr5-105545204-4	chr5	105544687	105545687	+	966.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	RLTR17|LTR|ERVK	25716.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	3.0	5.0	4.5	7.0	4.0	8.5
Merged-chr14-10430093-4	chr14	10429601	10430601	+	966.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 4 of 9)	intron (NM_001360141, intron 4 of 9)	23357.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-55209204-4	chr18	55208693	55209693	+	966.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-216602.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	5.0	0.0	0.0	0.0	0.0	1.0
Merged-chr15-55291993-4	chr15	55291498	55292498	+	966.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15752.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-81037563-4	chr3	81036984	81037984	+	966.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019971, exon 1 of 6)	exon (NM_019971, exon 1 of 6)	1068.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	4.0	14.5	16.0	10.5	10.5	16.5
Merged-chr5-101766957-4	chr5	101766453	101767453	+	966.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173370, intron 1 of 12)	intron (NM_173370, intron 1 of 12)	1823.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40577366-4	chr9	40576852	40577852	+	966.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45969.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	27.5	40.5	53.0	50.0	100.5	56.5
Merged-chr19-16133555-7	chr19	16133018	16134018	+	966.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	CpG	687.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53563227-3	chr11	53562727	53563727	+	966.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B2|LTR|ERVK	-4142.0	NM_008443	16568.0	Mm.88694	NM_008443	ENSMUSG00000018395	Kif3a	Kif3|Kifl|Kns3	kinesin family member 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107229154-3	chr11	107228641	107229641	+	966.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 7 of 9)	B4A|SINE|B4	-39760.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5777026-4	chr13	5776458	5777458	+	966.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81134.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117132930-2	chr4	117132430	117133430	+	966.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_013807, exon 4 of 15)	exon (NM_013807, exon 4 of 15)	1033.0	NM_013807	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	6.5	9.0	3.0	13.0	5.5	9.5
Merged-chr14-46790520-2	chr14	46790020	46791020	+	966.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2163.0	NM_009919	12793.0	Mm.3261	NM_009919	ENSMUSG00000015759	Cnih1	0610007J15|CNIH-1|Cnih	cornichon family AMPA receptor auxiliary protein 1	protein-coding	1.0	5.5	10.0	8.0	16.0	2.0
Merged-chr7-44855361-2	chr7	44854861	44855861	+	966.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001290695)	TTS (NM_001290695)	-1785.0	NM_021549	59047.0	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	15.5	45.5	22.5	8.5	17.5	16.5
Merged-chr6-128648751-4	chr6	128648302	128649302	+	966.662476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13583.0	NM_053165	94071.0	Mm.197689	NM_053165	ENSMUSG00000030364	Clec2h	Clrf|clr-f	C-type lectin domain family 2, member h	protein-coding	13.5	31.5	27.0	11.0	37.5	24.5
Merged-chr12-82470778-4	chr12	82470281	82471281	+	966.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID|SINE|ID	-146144.0	NM_001310478	50779.0	Mm.126176	NM_015812	ENSMUSG00000021219	Rgs6	-	regulator of G-protein signaling 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45473339-4	chr4	45472836	45473836	+	966.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 2 of 5)	intron (NM_001033306, intron 2 of 5)	57492.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	0.0	8.0	1.0	0.0	0.0	2.5
Merged-chr12-3691161-5	chr12	3690705	3691705	+	966.6333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 9 of 17)	RLTR10D2|LTR|ERVK	-115775.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35039795-4	chr12	35039304	35040304	+	966.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7385.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	78.0	120.5	100.5	100.0	97.5	81.0
Merged-chr9-106280580-4	chr9	106280075	106281075	+	966.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027354)	promoter-TSS (NM_027354)	-486.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	74.0	111.0	105.5	45.5	137.0	124.5
Merged-chr4-150156389-4	chr4	150155891	150156891	+	966.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085529, intron 4 of 11)	intron (NM_001085529, intron 4 of 11)	7419.0	NM_001085529	435818.0	Mm.359648	NM_001085529	ENSMUSG00000062064	Slc2a7	-	solute carrier family 2 (facilitated glucose transporter), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4841605-3	chr12	4841090	4842090	+	966.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016863)	promoter-TSS (NM_016863)	5.0	NM_016863	14226.0	Mm.20453	NM_016863	ENSMUSG00000020635	Fkbp1b	12.6kDa|AW494148|FKBP12.6|calstabin2	FK506 binding protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-4394115-3	chr10	4393542	4394542	+	966.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-5934.0	NM_001033466	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	30.5	23.0	25.0	22.5	32.0	17.0
Merged-chr11-116869857-4	chr11	116869377	116870377	+	966.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178620, intron 10 of 12)	intron (NM_178620, intron 10 of 12)	15877.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	7.0	42.5	15.5	5.0	17.0	6.5
Merged-chr4-133174528-4	chr4	133174012	133175012	+	966.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	-21143.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	65.0	128.0	117.5	56.5	151.0	107.0
Merged-chr2-148523149-4	chr2	148522647	148523647	+	966.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79612.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-98513477-4	chr6	98512976	98513976	+	966.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-170722.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	6.5	1.0	10.5	6.5	2.5	8.0
Merged-chr13-18808435-5	chr13	18808024	18809024	+	966.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 7 of 28)	intron (NM_172120, intron 7 of 28)	91232.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67182780-4	chr10	67182281	67183281	+	966.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 2 of 25)	intron (NM_207221, intron 2 of 25)	-2969.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65493084-4	chr9	65492606	65493606	+	966.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30405.0	NM_001357813	27965.0	Mm.272475	NM_138584	ENSMUSG00000032388	Spg21	ACP33|BM-019|C78576|D9Wsu18e|GL010|MAST	SPG21, maspardin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-72547393-4	chr11	72546895	72547895	+	966.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029932, intron 1 of 11)	intron (NM_029932, intron 1 of 11)	2851.0	NM_029932	77577.0	Mm.46185	NM_029932	ENSMUSG00000020798	Spns3	9830002I17Rik	spinster homolog 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68725199-4	chr10	68724683	68725683	+	966.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	1437.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108913038-4	chr12	108912542	108913542	+	966.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	18770.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-45678885-4	chr11	45678384	45679384	+	966.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-129199.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0.0	5.0	0.0	0.5	1.0	1.5
Merged-chr3-115992258-4	chr3	115991735	115992735	+	966.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023214, intron 3 of 10)	intron (NM_023214, intron 3 of 10)	12333.0	NR_130332	100316705.0		NR_130332	ENSMUSG00000089261	Mir669n	mmu-mir-669n	microRNA 669n	ncRNA	23.0	63.5	55.5	39.0	61.5	43.0
Merged-chr3-126611089-3	chr3	126610585	126611585	+	966.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	14134.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	22.5	76.5	48.0	52.0	67.0	71.0
Merged-chr3-19474253-3	chr3	19473750	19474750	+	966.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34345.0	NM_001163536	66326.0	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	14.0	13.0	6.0	3.5	17.5	0.0
Merged-chr8-126692420-3	chr8	126691949	126692949	+	966.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99013.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.0	0.0	1.5	3.0	0.0	1.0
Merged-chr3-51720445-3	chr3	51719955	51720955	+	966.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	RMER19A|LTR|ERVK	59276.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39737888-4	chr18	39737385	39738385	+	966.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35612.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97400518-4	chr11	97400013	97401013	+	966.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37962.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	2.0	2.5	0.5	1.0	6.5	0.0
Merged-chr8-85298709-4	chr8	85298212	85299212	+	966.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019716)	promoter-TSS (NM_019716)	785.0	NM_022997	65114.0	Mm.296520	NM_022997	ENSMUSG00000031696	Vps35	AI647796|Mem3	VPS35 retromer complex component	protein-coding	36.5	164.5	133.5	75.5	193.5	182.5
Merged-chr11-8708841-4	chr11	8708345	8709345	+	966.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44310.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-99024783-4	chr6	99024288	99025288	+	966.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 4 of 17)	intron (NM_001197321, intron 4 of 17)	3510.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127091771-3	chr7	127091269	127092269	+	966.5277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178901, intron 1 of 1)	intron (NM_178901, intron 1 of 1)	333.0	NM_178901	101602.0	Mm.490357	NM_178901	ENSMUSG00000045165	AI467606	-	expressed sequence AI467606	protein-coding	4.0	6.5	6.0	4.0	6.5	7.0
Merged-chr11-100388813-2	chr11	100388313	100389313	+	966.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010593, intron 1 of 13)	intron (NM_010593, intron 1 of 13)	8977.0	NM_010593	16480.0	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-94700209-3	chr6	94699677	94700677	+	966.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008377)	promoter-TSS (NM_008377)	-32.0	NM_008377	16206.0	Mm.245210	NM_008377	ENSMUSG00000030029	Lrig1	D6Bwg0781e|Img|LIG-1	leucine-rich repeats and immunoglobulin-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67216801-2	chr7	67216301	67217301	+	966.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_131044, intron 2 of 2)	MLTR14|LTR|ERV1	5657.0	NR_131044	76628.0	Mm.384589	NR_131043	ENSMUSG00000097527	1700112J16Rik	-	RIKEN cDNA 1700112J16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101263967-2	chr15	101263467	101264467	+	966.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2879.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	3.0	4.0	5.0	6.5	0.5	2.5
Merged-chr3-90268862-2	chr3	90268362	90269362	+	966.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356483, intron 4 of 27)	intron (NM_001356483, intron 4 of 27)	-1287.0	NR_105979	102465612.0		NR_105979	ENSMUSG00000099199	Mir7012	Gm27370|mmu-mir-7012	microRNA 7012	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170166462-2	chr2	170165962	170166962	+	966.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-23787.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-4126572-4	chr10	4126057	4127057	+	966.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 26 of 27)	intron (NM_001170785, intron 26 of 27)	86563.0	NR_152620	102632515.0	Mm.416995	NR_152620	ENSMUSG00000111266	Gm30570	-	predicted gene, 30570	ncRNA	5.0	5.5	9.5	7.0	25.5	6.0
Merged-chr9-65101890-2	chr9	65101390	65102390	+	966.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290315, intron 1 of 19)	CpG	404.0	NM_001290315	56741.0	Mm.209041	NM_020043	ENSMUSG00000032816	Igdcc4	DDM36|Nope	immunoglobulin superfamily, DCC subclass, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-6718848-2	chr10	6718348	6719348	+	966.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11C_MM|LTR|ERVK	-39745.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	0.0	0.0	0.0	2.5	0.0	1.5
Merged-chr4-53127783-4	chr4	53127308	53128308	+	966.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 4 of 49)	intron (NM_013454, intron 4 of 49)	32087.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48232704-4	chr17	48232207	48233207	+	966.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021406)	promoter-TSS (NM_021406)	-32.0	NM_001347399	58217.0	Mm.248352	NM_021406	ENSMUSG00000042265	Trem1	-	triggering receptor expressed on myeloid cells 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108002058-4	chr9	108001579	108002579	+	966.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013785)	promoter-TSS (NM_013785)	-569.0	NM_013785	27399.0	Mm.276155	NM_013785	ENSMUSG00000032594	Ip6k1	1200016D08Rik|AU022776|Ihpk1|InsP6|InsP6k1|Itpk6	inositol hexaphosphate kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-101665445-4	chr2	101664943	101665943	+	966.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12977.0	NM_009424	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-140940795-2	chr7	140940295	140941295	+	966.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145387)	promoter-TSS (NM_145387)	-596.0	NR_153832	212974.0	Mm.260139	NM_145387	ENSMUSG00000062031	Pgghg	5730511L01Rik|Athl1|BC023151	protein glucosylgalactosylhydroxylysine glucosidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26469048-2	chr17	26468547	26469547	+	966.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39425.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	1.5	0.0	1.5	0.0	1.0	0.5
Merged-chr7-88279722-4	chr7	88279201	88280201	+	966.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009982, intron 1 of 6)	B1_Mus1|SINE|Alu	1616.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-114953619-4	chr13	114953111	114954111	+	966.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-21511.0	NM_008396	16398.0	Mm.5007	NM_008396	ENSMUSG00000015533	Itga2	CD49B|DX5|GPIa	integrin alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128093328-4	chr10	128092833	128093833	+	966.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054078, intron 1 of 29)	CpG	550.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15804581-4	chr17	15804017	15805017	+	966.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22069.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	17.0	9.5	2.0	9.0	3.5	3.5
Merged-chr2-76367389-4	chr2	76366892	76367892	+	966.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2592.0	NM_153405	241490.0	Mm.33310	NM_153405	ENSMUSG00000042369	Rbm45	Drb1|Drbp1|G430095G15Rik	RNA binding motif protein 45	protein-coding	12.0	1.5	13.5	3.5	2.0	6.0
Merged-chr4-89265712-4	chr4	89265186	89266186	+	966.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	16506.0	NM_001040654	12578.0	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin dependent kinase inhibitor 2A	protein-coding	6.0	0.0	0.5	0.0	0.0	0.0
Merged-chr10-69888633-4	chr10	69888126	69889126	+	966.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170729, intron 16 of 40)	intron (NM_170729, intron 16 of 40)	-36906.0	NM_170687	11735.0	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33337365-4	chr16	33336903	33337903	+	966.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43333.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129596523-3	chr2	129596026	129597026	+	966.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	1064.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	226.0	599.0	376.5	230.0	631.5	441.5
Merged-chr19-11807449-3	chr19	11806947	11807947	+	966.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	11956.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	18.5	0.0	8.5	13.0	24.0	18.5
Merged-chr16-4370250-4	chr16	4369787	4370787	+	966.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009624, intron 2 of 10)	intron (NM_009624, intron 2 of 10)	50211.0	NM_001291910	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55416289-4	chr12	55415770	55416770	+	966.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310583, intron 6 of 6)	intron (NM_001310583, intron 6 of 6)	17445.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88433568-4	chr4	88433073	88434073	+	966.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025760, intron 3 of 6)	intron (NM_025760, intron 3 of 6)	5353.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	6.0	21.5	2.0	1.0	2.0	3.0
Merged-chr7-101028736-4	chr7	101028236	101029236	+	966.3916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16683.0	NM_001302346	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109352525-3	chr3	109352013	109353013	+	966.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 1 of 26)	MIRc|SINE|MIR	11830.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79587483-3	chr8	79586983	79587983	+	966.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52193.0	NM_001256033	73945.0	Mm.34348	NM_001081164	ENSMUSG00000036990	Otud4	4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046	OTU domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-20933642-3	chr1	20933144	20934144	+	966.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355122, intron 2 of 2)	intron (NM_001355122, intron 2 of 2)	15804.0	NM_001355122	74229.0	Mm.40780	NM_028829	ENSMUSG00000025931	Paqr8	1700019B16Rik|3110001D06Rik	progestin and adipoQ receptor family member VIII	protein-coding	9.0	4.0	3.0	5.5	0.0	4.0
Merged-chr19-17346489-3	chr19	17346108	17347108	+	966.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	-7103.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	17.0	52.0	36.5	46.0	89.0	73.5
Merged-chr1-4907214-4	chr1	4906747	4907747	+	966.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48919.0	NM_001159751	21399.0	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-115091437-2	chr13	115090937	115091937	+	966.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033228, intron 1 of 28)	intron (NM_001033228, intron 1 of 28)	-1279.0	NM_134058	105083.0	Mm.486295	NM_134058	ENSMUSG00000042275	Pelo	AA409897|AI852218	pelota mRNA surveillance and ribosome rescue factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-63916550-4	chr7	63916058	63917058	+	966.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256311)	promoter-TSS (NM_001256311)	-299.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	3.5	7.5	19.5	5.5	28.0	34.5
Merged-chr7-45117732-4	chr7	45117237	45118237	+	966.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4020.0	NR_029560	387168.0		NR_029560	ENSMUSG00000065495	Mir150	Mirn150|mir-150|mmu-mir-150	microRNA 150	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-48992811-8	chr16	48992283	48993283	+	966.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027341, intron 1 of 30)	intron (NM_027341, intron 1 of 30)	1329.0	NM_027341	224170.0	Mm.275138	NM_027341	ENSMUSG00000064061	Dzip3	2310047C04Rik|2A-HUB|6430549P11Rik|A230104G20	DAZ interacting protein 3, zinc finger	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105732668-4	chr5	105732183	105733183	+	966.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122768, intron 2 of 2)	intron (NM_001122768, intron 2 of 2)	31873.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	12.0	37.0	23.5	16.0	12.5	15.5
Merged-chr9-116182322-4	chr9	116181818	116182818	+	966.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-6862.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	12.0	42.0	49.0	36.5	103.5	73.5
Merged-chr14-54426331-4	chr14	54425797	54426797	+	966.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026851)	promoter-TSS (NM_026851)	-612.0	NM_026851	68836.0	Mm.248163	NM_026851	ENSMUSG00000010406	Mrpl52	1110047B07Rik	mitochondrial ribosomal protein L52	protein-coding	2.5	1.5	2.5	13.0	2.5	1.0
Merged-chr1-131092449-4	chr1	131091961	131092961	+	966.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	5382.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	4.0	14.5	13.5	3.5	11.5	13.5
Merged-chr15-59811748-4	chr15	59811243	59812243	+	966.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16784.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-91194756-4	chr15	91194245	91195245	+	966.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-2738.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135511045-2	chr4	135510545	135511545	+	966.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_030189, intron 3 of 8)	intron (NM_030189, intron 3 of 8)	15058.0	NM_030189	78806.0	Mm.374844	NM_030189	ENSMUSG00000028801	Stpg1	4930403G18Rik|4930555I21Rik|Mapo2	sperm tail PG rich repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83632919-2	chr11	83632419	83633419	+	966.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16459.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-55198607-2	chr6	55198107	55199107	+	966.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4776.0	NM_177883	330323.0	Mm.268997	NM_177883	ENSMUSG00000038022	Mindy4	C330043M08Rik|Fam188b|Gm1406	MINDY lysine 48 deubiquitinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140419900-2	chr5	140419400	140420400	+	966.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133916, intron 1 of 18)	intron (NM_133916, intron 1 of 18)	595.0	NM_133916	27979.0	Mm.21671	NM_133916	ENSMUSG00000056076	Eif3b	AL033316|AL033334|AL033369|AW208965|D5Wsu45e|EIF3-ETA|EIF3-P110|EIF3-P116|Eif3s9|PRT1	eukaryotic translation initiation factor 3, subunit B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30603982-2	chr2	30603482	30604482	+	966.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_030137, intron 1 of 1)	intron (NM_030137, intron 1 of 1)	8938.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-60538728-4	chr3	60538222	60539222	+	966.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	37543.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	19.0	58.5	24.0	15.0	47.0	29.0
Merged-chr13-45625954-3	chr13	45625446	45626446	+	966.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 5 of 6)	MIRb|SINE|MIR	118502.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87745409-4	chr6	87744923	87745923	+	966.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159697, intron 2 of 7)	intron (NM_001159697, intron 2 of 7)	14554.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	7.0	6.0	6.5	7.5	2.5	8.0
Merged-chr6-53995724-4	chr6	53995234	53996234	+	966.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110484, intron 1 of 3)	MLT1H2|LTR|ERVL-MaLR	17043.0	NR_110484	320178.0	Mm.320413	NR_110484	ENSMUSG00000108060	4921529L05Rik	4930590G02Rik	RIKEN cDNA 4921529L05 gene	ncRNA	19.0	20.5	13.0	1.0	5.5	3.0
Merged-chr1-152809103-4	chr1	152808621	152809621	+	966.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 2 of 15)	RSINE1|SINE|B4	8968.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90040515-4	chr9	90040013	90041013	+	966.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-13754.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	4.0	10.0	6.0	10.0	1.0	15.5
Merged-chr18-68337447-4	chr18	68336950	68337950	+	966.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013596)	promoter-TSS (NM_013596)	-153.0	NM_013596	17203.0	Mm.8003	NM_013596	ENSMUSG00000007480	Mc5r	-	melanocortin 5 receptor	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr18-38372659-4	chr18	38372178	38373178	+	966.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-33685.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161976604-4	chr1	161976100	161977100	+	966.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204904, intron 1 of 6)	intron (NM_001204904, intron 1 of 6)	3036.0	NM_001204904	75368.0	Mm.108728	NM_001204904	ENSMUSG00000086277	4930558K02Rik	-	RIKEN cDNA 4930558K02 gene	protein-coding	4.0	7.5	4.5	6.0	11.0	7.0
Merged-chr6-53996785-3	chr6	53996292	53997292	+	966.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110484, intron 2 of 3)	intron (NR_110484, intron 2 of 3)	18101.0	NR_110484	320178.0	Mm.320413	NR_110484	ENSMUSG00000108060	4921529L05Rik	4930590G02Rik	RIKEN cDNA 4921529L05 gene	ncRNA	35.0	90.5	36.5	5.0	32.5	17.0
Merged-chr7-67444817-6	chr7	67444231	67445231	+	966.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71873.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	35.5	89.5	58.0	24.0	76.5	39.0
Merged-chr7-141370148-4	chr7	141369635	141370635	+	966.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5025.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118121251-4	chr10	118120751	118121751	+	966.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20536.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0.5	0.0	0.0	4.5	0.0	0.0
Merged-chr2-167688275-4	chr2	167687774	167688774	+	966.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009883)	promoter-TSS (NM_009883)	-641.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85408298-4	chr8	85407785	85408785	+	966.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025722)	TTS (NM_025722)	24556.0	NR_033144	66714.0	Mm.272748	NM_025722	ENSMUSG00000036934	4921524J17Rik	-	RIKEN cDNA 4921524J17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14324839-4	chr2	14324318	14325318	+	966.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 25 of 29)	RLTR16B_MM|LTR|ERVK	-63580.0	NM_001012305	277468.0	Mm.44662	NM_001012305	ENSMUSG00000036949	Slc39a12	AW046938|Gm731	solute carrier family 39 (zinc transporter), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107313412-3	chr9	107312918	107313918	+	966.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16759.0	NM_001317354	12700.0	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	88.0	160.5	79.5	54.5	83.0	43.5
Merged-chr14-122633322-6	chr14	122632810	122633810	+	966.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 7 of 24)	intron (NR_153443, intron 7 of 24)	98982.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74638597-4	chr11	74638084	74639084	+	966.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001013784, exon 4 of 4)	3' UTR (NM_001013784, exon 4 of 4)	-10911.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62812924-4	chr9	62812439	62813439	+	966.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-1291.0	NM_010193	14155.0	Mm.24069	NM_010193	ENSMUSG00000032244	Fem1b	mKIAA0396	feminization 1 homolog b (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-137736897-2	chr6	137736397	137737397	+	966.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011499, intron 2 of 9)	intron (NM_011499, intron 2 of 9)	1815.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25535585-4	chr8	25535084	25536084	+	966.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079909, intron 2 of 16)	intron (NM_001079909, intron 2 of 16)	16825.0	NM_001079908	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	0.0	5.5	5.5	2.5	6.0	2.0
Merged-chr9-84545571-4	chr9	84545051	84546051	+	966.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-228847.0	NR_040739	75253.0	Mm.401984	NR_040739	ENSMUSG00000099724	4930554C24Rik	-	RIKEN cDNA 4930554C24 gene	ncRNA	62.5	73.0	77.0	9.5	11.0	45.0
Merged-chr13-23717732-4	chr13	23717222	23718222	+	966.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_1B-I_MM-int|LTR|ERVK	-6868.0	NM_010424	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	10.5	41.5	14.5	3.0	30.5	17.5
Merged-chr7-43677401-2	chr7	43676901	43677901	+	966.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145582, exon 3 of 3)	3' UTR (NM_145582, exon 3 of 3)	5370.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78176645-4	chr9	78176144	78177144	+	966.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040401, exon 2 of 4)	non-coding (NR_040401, exon 2 of 4)	730.0	NR_040401	320295.0	Mm.131285	NR_040401	ENSMUSG00000097574	C920006O11Rik	-	RIKEN cDNA C920006O11 gene	ncRNA	222.0	556.5	460.0	241.0	579.5	448.5
Merged-chr3-137846736-4	chr3	137846248	137847248	+	966.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR35B_MM|LTR|ERVL	-17739.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	0.0	11.5	1.0	4.5	5.5	2.0
Merged-chr9-96365606-4	chr9	96365117	96366117	+	966.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1186.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	7.5	9.0	2.0	5.0	4.0	8.5
Merged-chr9-90126875-4	chr9	90126377	90127377	+	966.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12057.0	NM_024431	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	0.0	0.0	4.0	1.0	4.5	0.0
Merged-chr1-53816618-4	chr1	53816127	53817127	+	966.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 28 of 28)	MTE2b|LTR|ERVL-MaLR	-31412.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89160172-4	chr3	89159666	89160666	+	966.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008227)	promoter-TSS (NM_008227)	-9.0	NM_008227	15168.0	Mm.389461	NM_008227	ENSMUSG00000028051	Hcn3	BCNG-4|Bcng4|Hac3|Hcn4	hyperpolarization-activated, cyclic nucleotide-gated K+ 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-47306528-3	chr18	47306011	47307011	+	966.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311097, intron 1 of 17)	intron (NM_001311097, intron 1 of 17)	62357.0	NM_018744	20358.0	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-78549004-3	chr14	78548508	78549508	+	966.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12148.0	NM_001164503	219181.0	Mm.89413	NM_001164503	ENSMUSG00000022016	Akap11	6330501D17Rik|AKAP220|Gm80|PRKA11|mKIAA0629	A kinase (PRKA) anchor protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16045500-2	chr7	16045000	16046000	+	966.214294	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26345.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	5.5	20.0	3.0	4.5	27.0	6.5
Merged-chr5-103746935-4	chr5	103746439	103747439	+	966.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7223.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-74362333-4	chr13	74361866	74362866	+	966.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001168658, exon 4 of 4)	3' UTR (NM_001168658, exon 4 of 4)	1634.0	NM_001033042	432779.0	Mm.324679	NM_001033042	ENSMUSG00000021579	Lrrc14b	AI595366	leucine rich repeat containing 14B	protein-coding	8.0	0.0	0.0	1.0	0.0	0.5
Merged-chr2-32710600-4	chr2	32710098	32711098	+	966.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130860, intron 2 of 6)	intron (NM_130860, intron 2 of 6)	2186.0	NM_130860	107951.0	Mm.27557	NM_130860	ENSMUSG00000009555	Cdk9	PITALRE	cyclin-dependent kinase 9 (CDC2-related kinase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-63923669-4	chr11	63923170	63924170	+	966.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1386.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32083769-4	chr2	32083265	32084265	+	966.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175511)	promoter-TSS (NM_175511)	-60.0	NM_175511	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46039235-4	chr4	46038729	46039729	+	966.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021883)	promoter-TSS (NM_021883)	7.0	NM_021883	21916.0	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-28263263-2	chr3	28262763	28263763	+	966.2000119999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163007)	promoter-TSS (NM_001163007)	49.0	NM_026910	665113.0	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-13875161-4	chr6	13874682	13875682	+	966.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045995, intron 1 of 2)	MTE2a|LTR|ERVL-MaLR	3613.0	NR_045995	76311.0	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97949835-4	chr15	97949316	97950316	+	966.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14413.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108518200-4	chr9	108517703	108518703	+	966.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175143, intron 1 of 9)	intron (NM_175143, intron 1 of 9)	1116.0	NM_175143	69232.0	Mm.335449	NM_175143	ENSMUSG00000006673	Qrich1	2610028H07Rik|b2b2404Clo	glutamine-rich 1	protein-coding	50.5	160.0	162.0	58.0	153.0	139.5
Merged-chr17-35980791-3	chr17	35980260	35981260	+	966.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282013)	promoter-TSS (NM_001282013)	805.0	NM_008136	14670.0	Mm.335754	NM_008136	ENSMUSG00000024429	Gnl1	Gna-rs1|Gnal1	guanine nucleotide binding protein-like 1	protein-coding	0.0	10.0	4.5	3.0	0.0	0.5
Merged-chr1-180889977-4	chr1	180889464	180890464	+	966.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3144.0	NM_177099	320202.0	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102347555-4	chr7	102347060	102348060	+	966.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009287, intron 1 of 11)	intron (NM_009287, intron 1 of 11)	79736.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71000513-2	chr17	71000013	71001013	+	966.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026064, intron 1 of 3)	intron (NM_026064, intron 1 of 3)	2020.0	NM_026064	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	13.5	0.0	5.0	7.0	8.5	4.5
Merged-chr18-34391027-4	chr18	34390531	34391531	+	966.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-17616.0	NM_007874	13476.0	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-18009342-4	chr5	18008820	18009820	+	966.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 5 of 7)	intron (NM_001081143, intron 5 of 7)	46750.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101785360-4	chr11	101784853	101785853	+	966.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316366)	promoter-TSS (NM_001316366)	-43.0	NM_001316365	18612.0	Mm.5025	NM_008815	ENSMUSG00000017724	Etv4	AW414408|Pea-3|Pea3	ets variant 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128611082-4	chr4	128610577	128611577	+	966.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177758)	promoter-TSS (NM_177758)	-979.0	NM_177758	269585.0	Mm.153291	NM_177758	ENSMUSG00000061894	Zscan20	C130001F22|Zfp31|Zkscan20	zinc finger and SCAN domains 20	protein-coding	19.5	40.0	40.0	40.5	45.5	36.5
Merged-chr1-132355944-4	chr1	132355424	132356424	+	966.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001311108)	TTS (NM_001311108)	12024.0	NM_001311108	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36649935-4	chr15	36649439	36650439	+	966.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40966.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110190263-4	chr7	110189757	110190757	+	966.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31446.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150648122-4	chr2	150647624	150648624	+	966.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080575, intron 2 of 13)	B3A|SINE|B2	-19370.0	NR_040331	109344.0	Mm.440012	NR_040331	ENSMUSG00000087406	E130215H24Rik	-	RIKEN cDNA E130215H24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89170259-4	chr15	89169735	89170735	+	966.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159521, intron 3 of 37)	intron (NM_001159521, intron 3 of 37)	3716.0	NM_001159521	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81284975-2	chr10	81284475	81285475	+	966.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282095, intron 1 of 20)	intron (NM_001282095, intron 1 of 20)	806.0	NM_001282096	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3179104-3	chr11	3178605	3179605	+	966.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 5 of 32)	intron (NM_030207, intron 5 of 32)	14358.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153557571-4	chr2	153557081	153558081	+	966.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27610.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	3.0	3.5	9.0	12.0	8.0	6.5
Merged-chr14-55788329-4	chr14	55787854	55788854	+	966.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019955, exon 2 of 10)	exon (NM_019955, exon 2 of 10)	503.0	NM_001164107	56532.0	Mm.46612	NM_019955	ENSMUSG00000022221	Ripk3	2610528K09Rik|AW107945|Rip3	receptor-interacting serine-threonine kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95752704-4	chr16	95752201	95753201	+	966.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50294.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81409561-4	chr10	81409059	81410059	+	966.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152732)	promoter-TSS (NR_152732)	-16.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-51083814-4	chr15	51083314	51084314	+	966.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-193773.0	NM_032000	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	5.5	1.5	4.5	0.5	1.0	10.5
Merged-chr16-90396387-4	chr16	90395875	90396875	+	966.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015755, intron 1 of 10)	intron (NM_015755, intron 1 of 10)	9978.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-103893225-4	chr13	103892722	103893722	+	966.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005868, intron 1 of 26)	intron (NM_001005868, intron 1 of 26)	27364.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73488890-4	chr13	73488398	73489398	+	966.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145376, exon 3 of 14)	exon (NM_145376, exon 3 of 14)	21515.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86740229-4	chr12	86739737	86740737	+	966.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195767, intron 3 of 14)	B3A|SINE|B2	5868.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114851012-4	chr11	114850501	114851501	+	966.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110337)	promoter-TSS (NM_001110337)	-531.0	NM_001110337	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124710325-4	chr2	124709805	124710805	+	966.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	56724.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118148776-9	chr11	118148342	118149342	+	966.0793460000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19623.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26887127-7	chr8	26886645	26887645	+	966.0714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-62722.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-5473682-3	chr16	5473165	5474165	+	966.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-217709.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-69346645-4	chr18	69346174	69347174	+	966.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 1 of 19)	intron (NM_001361128, intron 1 of 19)	514.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	15.0	28.0	12.5	8.5	14.5	6.0
Merged-chr11-118474068-4	chr11	118473567	118474567	+	966.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII|LTR|ERVK	-2765.0	NM_172573	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138923112-4	chr1	138922614	138923614	+	966.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-40595.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110703303-5	chr12	110702780	110703780	+	966.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6885.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25692182-2	chr7	25691682	25692682	+	966.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011577, intron 1 of 6)	B3|SINE|B2	5180.0	NM_011577	21803.0	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19627820-2	chr7	19627320	19628320	+	966.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009046, intron 2 of 10)	RMER17C|LTR|ERVK	1618.0	NM_001290457	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35211682-1	chr9	35211182	35212182	+	966.0	f0_c57.idr	promoter-TSS (NM_001291449)	promoter-TSS (NM_001291449)	479.0	NM_026130	67398.0	Mm.284688	NM_026130	ENSMUSG00000032042	Srpr	1300011P19Rik|D11Mgi27|Srpra	signal recognition particle receptor ('docking protein')	protein-coding	102.0	271.5	246.5	106.0	199.0	174.5
Merged-chr4-53045928-2	chr4	53045428	53046428	+	966.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 38 of 49)	intron (NM_013454, intron 38 of 49)	34048.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92640243-2	chr1	92639743	92640743	+	966.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163425, intron 1 of 2)	intron (NM_001163425, intron 1 of 2)	1705.0	NR_028108	66915.0	Mm.30179	NM_001163425	ENSMUSG00000073616	Cops9	1110002M09Rik|Myeov2	COP9 signalosome subunit 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156593506-4	chr1	156593007	156594007	+	966.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	34720.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	6.5	3.0	11.0	2.5	0.0	0.5
Merged-chr9-114844884-2	chr9	114844384	114845384	+	966.0	f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_027294)	promoter-TSS (NM_027294)	-732.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	32.5	52.5	60.0	53.5	121.5	113.0
Merged-chr18-53177354-4	chr18	53176838	53177838	+	966.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357463, intron 1 of 15)	intron (NM_001357463, intron 1 of 15)	1046.0	NM_026386	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97727366-3	chr15	97726880	97727880	+	966.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168693, intron 1 of 9)	intron (NM_001168693, intron 1 of 9)	4025.0	NM_001168693	19011.0	Mm.1001	NM_008902	ENSMUSG00000022468	Endou	Pp11r|Tcl-30	endonuclease, polyU-specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102108983-2	chr15	102108483	102109483	+	966.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355636, intron 11 of 28)	intron (NM_001355636, intron 11 of 28)	6049.0	NM_153533	209039.0	Mm.29389	NM_153533	ENSMUSG00000037003	Tns2	C1-ten|Tenc1|nep|nph	tensin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80001823-2	chr10	80001323	80002323	+	966.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347081, intron 11 of 45)	intron (NM_001347081, intron 11 of 45)	4208.0	NM_013850	27403.0	Mm.103351	NM_013850	ENSMUSG00000035722	Abca7	ABCX|Abc51	ATP-binding cassette, sub-family A (ABC1), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125279951-4	chr6	125279457	125280457	+	966.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009446, intron 4 of 4)	intron (NM_009446, intron 4 of 4)	6124.0	NM_009446	22144.0	Mm.270295	NM_009446	ENSMUSG00000067702	Tuba3a	AI528779|M[a]3|Tuba3	tubulin, alpha 3A	protein-coding	6.5	0.0	1.0	0.0	1.0	4.5
Merged-chr1-93824809-2	chr1	93824309	93825309	+	966.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178882)	promoter-TSS (NM_178882)	-431.0	NM_178882	98314.0	Mm.383401	NM_178882	ENSMUSG00000073609	D2hgdh	AA408776|AA408778|AI325464	D-2-hydroxyglutarate dehydrogenase	protein-coding	15.5	18.0	4.0	6.5	10.5	14.0
Merged-chr6-98959504-3	chr6	98959010	98960010	+	966.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 10 of 17)	intron (NM_001197321, intron 10 of 17)	68788.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30162097-2	chr2	30161597	30162597	+	966.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9427.0	NM_007931	13804.0	Mm.474473	NM_007931	ENSMUSG00000015337	Endog	-	endonuclease G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-17858515-2	chr5	17858015	17859015	+	966.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	RMER1B|Other|Other	-8723.0	NM_001159556	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59809166-1	chr15	59808666	59809666	+	966.0	f0_c57.idr	Intergenic	Intergenic	-14207.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	148.5	306.5	237.0	98.5	251.0	224.0
Merged-chr3-75277650-4	chr3	75277162	75278162	+	966.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-7584.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17183045-2	chr16	17182545	17183545	+	966.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009456, intron 1 of 3)	MT2A|LTR|ERVL	18447.0	NM_009456	22195.0	Mm.3074	NM_009456	ENSMUSG00000038965	Ube2l3	C79827|UbcM4|Ubce7	ubiquitin-conjugating enzyme E2L 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8532361-1	chr11	8531861	8532861	+	966.0	f1_balb.idr	intron (NM_001083587, intron 11 of 30)	intron (NM_001083587, intron 11 of 30)	132174.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	7.0	0.0	1.0	2.0	0.0	11.5
Merged-chr18-34850625-2	chr18	34850125	34851125	+	966.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10036.0	NM_144865	225362.0	Mm.293588	NM_144865	ENSMUSG00000038555	Reep2	-	receptor accessory protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61671242-4	chr9	61670743	61671743	+	966.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	243267.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74364432-3	chr1	74363915	74364915	+	966.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033345, intron 5 of 9)	intron (NM_001033345, intron 5 of 9)	2307.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-84020712-4	chr6	84020219	84021219	+	966.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310152, intron 1 of 53)	intron (NM_001310152, intron 1 of 53)	1333.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8841840-2	chr4	8841340	8842340	+	966.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 18 of 36)	L1MB7|LINE|L1	90516.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132610760-4	chr4	132610269	132611269	+	966.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28277.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	15.0	47.0	30.0	25.5	31.0	26.5
Merged-chr3-137863406-2	chr3	137862906	137863906	+	966.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1081.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-90323443-4	chr15	90322991	90323991	+	965.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-30219.0	NR_155426	102640415.0	Mm.394352	NR_155426	ENSMUSG00000116204	Gm36480	-	predicted gene, 36480	ncRNA	14.5	98.0	39.5	31.5	70.0	62.0
Merged-chr3-105789989-4	chr3	105789480	105790480	+	965.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145541, intron 1 of 7)	MTD|LTR|ERVL-MaLR	11401.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	0.0	8.0	6.0	1.5	7.0	2.5
Merged-chr6-34359229-4	chr6	34358735	34359735	+	965.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008012, intron 4 of 9)	intron (NM_008012, intron 4 of 9)	5089.0	NM_008012	14187.0	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-151322128-4	chr5	151321623	151322623	+	965.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-46552.0	NR_045700	625175.0	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165286581-4	chr2	165286071	165287071	+	965.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252575, intron 1 of 9)	intron (NM_001252575, intron 1 of 9)	1216.0	NM_001252574	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-104888176-4	chr2	104887697	104888697	+	965.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177600, intron 1 of 17)	MIRb|SINE|MIR	1873.0	NM_177600	211936.0	Mm.416538	NM_177600	ENSMUSG00000045106	Ccdc73	2210415I11Rik|4931417A20|AV080665|BC095976	coiled-coil domain containing 73	protein-coding	0.0	8.0	0.0	0.0	9.0	0.0
Merged-chr1-21078642-4	chr1	21078187	21079187	+	965.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177409, intron 1 of 10)	intron (NM_177409, intron 1 of 10)	538.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	3.0	7.5	14.0	8.0	11.0	4.0
Merged-chr2-32737266-4	chr2	32736753	32737753	+	965.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027529, intron 2 of 2)	intron (NM_027529, intron 2 of 2)	3763.0	NM_027529	70730.0	Mm.401360	NM_027529	ENSMUSG00000009551	6330409D20Rik	AA517851	RIKEN cDNA 6330409D20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59481919-3	chr15	59481417	59482417	+	965.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	107719.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	0.0	2.0	0.5	6.5	11.5	1.0
Merged-chr19-25052471-4	chr19	25051955	25052955	+	965.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 2 of 47)	intron (NM_028785, intron 2 of 47)	52926.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	1.0	2.5	14.5	7.5	17.5	10.5
Merged-chr17-56810443-4	chr17	56809962	56810962	+	965.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009056, intron 1 of 16)	intron (NM_009056, intron 1 of 16)	20546.0	NM_009056	19725.0	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81009043-2	chr15	81008543	81009543	+	965.9285890000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_134091, intron 10 of 21)	intron (NM_134091, intron 10 of 21)	31278.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-58568525-4	chr18	58568059	58569059	+	965.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081072, intron 1 of 9)	intron (NM_001081072, intron 1 of 9)	12319.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	4.5	14.5	12.0	5.0	8.5	11.0
Merged-chr1-165734491-4	chr1	165733982	165734982	+	965.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19-int|LTR|ERVK	-26388.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23272989-4	chr16	23272431	23273431	+	965.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-17539.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-20198102-4	chr3	20197606	20198606	+	965.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24253.0	NR_105974	102465609.0		NR_105974	ENSMUSG00000099105	Mir7007	Gm27897|mmu-mir-7007	microRNA 7007	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17712733-8	chr12	17712234	17713234	+	965.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	L1MC5a|LINE|L1	21925.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	113.5	329.0	220.0	103.5	234.0	181.5
Merged-chr2-129597278-10	chr2	129596823	129597823	+	965.8916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	1861.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	116.5	294.5	162.0	129.0	195.5	156.5
Merged-chr5-8347601-3	chr5	8347100	8348100	+	965.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	20560.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-119047412-3	chr10	119046944	119047944	+	965.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152787, intron 2 of 3)	MTC|LTR|ERVL-MaLR	3055.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	7.5	0.0	5.5	0.0	4.0	0.0
Merged-chr18-11840747-3	chr18	11840242	11841242	+	965.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035447)	promoter-TSS (NR_035447)	-304.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	20.0	0.5	1.0	20.0	1.5	1.0
Merged-chr1-134803791-4	chr1	134803275	134804275	+	965.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015606)	promoter-TSS (NR_015606)	-54.0	NR_015606	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97171894-4	chr7	97171406	97172406	+	965.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	90155.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	40.0	118.5	85.0	33.5	73.0	63.5
Merged-chr13-17977856-4	chr13	17977345	17978345	+	965.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15506.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117087717-4	chr2	117087234	117088234	+	965.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33337.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-80026228-4	chr2	80025703	80026703	+	965.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	12699.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	12.0	30.0	6.5	12.0	30.5	6.5
Merged-chr14-73179317-4	chr14	73178807	73179807	+	965.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134083, intron 14 of 14)	intron (NM_134083, intron 14 of 14)	27544.0	NR_030459	751541.0		NR_030459	ENSMUSG00000076121	Mir687	Mirn687|mir-687|mmu-mir-687	microRNA 687	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-15262545-4	chr10	15262071	15263071	+	965.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB2_1A-I_MM-int|LTR|ERVK	502282.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88281343-2	chr7	88280843	88281843	+	965.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009982, intron 1 of 6)	intron (NM_009982, intron 1 of 6)	3258.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	5.0	17.5	10.5	11.5	19.0	10.0
Merged-chr3-89869776-2	chr3	89869276	89870276	+	965.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001310676, exon 10 of 10)	3' UTR (NM_001310676, exon 10 of 10)	38406.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64775666-4	chr9	64775168	64776168	+	965.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35343.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36922270-4	chr1	36921784	36922784	+	965.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 1 of 40)	intron (NM_018872, intron 1 of 40)	17243.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-172439497-2	chr2	172438997	172439997	+	965.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1081.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25045104-2	chr17	25044612	25045612	+	965.8333130000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_134126, exon 13 of 30)	exon (NM_134126, exon 13 of 30)	29026.0	NM_134126	106633.0	Mm.32802	NM_134126	ENSMUSG00000024169	Ift140	AI661311|Tce5|Wdtc2|mKIAA0590	intraflagellar transport 140	protein-coding	7.0	14.5	18.0	0.5	7.0	6.0
Merged-chr16-13438108-4	chr16	13437623	13438623	+	965.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11400.0	NR_030549	100124432.0		NR_030549	ENSMUSG00000076972	Mir193b	Mir193|Mirn193b|mir-193b	microRNA 193b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45076841-3	chr19	45076318	45077318	+	965.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001362398, exon 3 of 6)	exon (NM_001362398, exon 3 of 6)	731.0	NM_001362397	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19012057-6	chr10	19011403	19012403	+	965.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166402)	promoter-TSS (NM_001166402)	60.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	7.5	12.0	8.0	5.5	15.5	9.0
Merged-chr19-46523793-5	chr19	46523329	46524329	+	965.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22181.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	30.0	92.0	48.5	33.0	92.0	54.0
Merged-chr10-78303770-4	chr10	78303287	78304287	+	965.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053014, intron 2 of 9)	intron (NM_053014, intron 2 of 9)	36420.0	NR_106119	102465765.0		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31402839-4	chr14	31402271	31403271	+	965.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	MTD|LTR|ERVL-MaLR	14906.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-47231277-4	chr13	47230752	47231752	+	965.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 4 of 7)	intron (NM_146042, intron 4 of 7)	37249.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	93.5	163.0	172.5	60.0	229.0	193.0
Merged-chr7-81860759-4	chr7	81860249	81861249	+	965.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111910, intron 1 of 7)	intron (NR_111910, intron 1 of 7)	1748.0	NM_145375	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-92856453-4	chr8	92855954	92856954	+	965.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357375, intron 1 of 12)	intron (NM_001357375, intron 1 of 12)	1121.0	NM_001357374	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	57.5	157.5	85.0	47.0	173.5	103.5
Merged-chr8-70793029-3	chr8	70792546	70793546	+	965.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199308)	promoter-TSS (NM_199308)	-613.0	NM_199308	546071.0	Mm.250731	NM_199308	ENSMUSG00000031833	Mast3	BC024265|mKIAA0561	microtubule associated serine/threonine kinase 3	protein-coding	1.5	8.5	6.0	2.5	8.0	4.0
Merged-chr18-77822016-3	chr18	77821511	77822511	+	965.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 1 of 14)	intron (NM_013831, intron 1 of 14)	-25621.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	1.0	10.5	6.0	0.0	0.0	0.5
Merged-chr18-77805672-4	chr18	77805182	77806182	+	965.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 1 of 14)	Tigger7|DNA|TcMar-Tigger	-9292.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	0.0	2.5	3.0	0.5	2.5	5.0
Merged-chr6-115722426-4	chr6	115721927	115722927	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	36572.0	NM_144805	94346.0	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33920902-4	chr17	33920408	33921408	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025313, intron 3 of 7)	intron (NM_001025313, intron 3 of 7)	1430.0	NM_009318	21356.0	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	13.0	54.0	7.0	12.5	35.5	29.0
Merged-chr16-92696828-4	chr16	92696337	92697337	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009821, exon 1 of 5)	5' UTR (NM_009821, exon 1 of 5)	492.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32198921-4	chr9	32198435	32199435	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195632, intron 9 of 21)	(CAAAA)n|Simple_repeat|Simple_repeat	-25314.0	NM_177379	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-5319975-4	chr5	5319479	5320479	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	-53911.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	40.5	50.0	37.5	25.5	56.5	32.5
Merged-chr13-51071539-4	chr13	51071049	51072049	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29178.0	NR_029463	77428.0	Mm.405630	NR_029463		9430083A17Rik	-	RIKEN cDNA 9430083A17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95907066-4	chr15	95906573	95907573	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 3 of 19)	intron (NM_175344, intron 3 of 19)	-77001.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76550454-2	chr15	76549954	76550954	+	965.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	11511.0	NM_029643	52710.0	Mm.28597	NM_029643	ENSMUSG00000022560	Slc52a2	2010003P03Rik|D15Ertd747e|GPCR42|Gpr172b|PAR2|mRFT1	solute carrier protein 52, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101155254-4	chr4	101154756	101155756	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 22 of 24)	intron (NM_146145, intron 22 of 24)	86218.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41334714-4	chr19	41334199	41335199	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	50371.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	42.5	101.5	64.0	25.5	74.5	47.5
Merged-chr18-20815559-4	chr18	20815047	20816047	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69143.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34149754-4	chr8	34149278	34150278	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	-3039.0	NM_026609	68192.0	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	84.0	105.5	97.5	50.5	101.5	77.0
Merged-chr10-111031644-4	chr10	111031147	111032147	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21581.0	NM_172554	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130293712-4	chr2	130293237	130294237	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2202.0	NM_001110513	228598.0	Mm.32582	NM_152993	ENSMUSG00000053552	Ebf4	Ebf3|O/E-4|Olf-1	early B cell factor 4	protein-coding	2.0	4.0	4.0	13.5	3.5	15.5
Merged-chr16-87737294-3	chr16	87736747	87737747	+	965.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_Mur|LTR|ERVK	38293.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.0	0.5	2.0	0.0	0.5	0.0
Merged-chr7-101093388-4	chr7	101092871	101093871	+	965.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15404.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8913326-4	chr4	8912807	8913807	+	965.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161983.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-32920794-4	chr15	32920325	32921325	+	965.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008304, exon 1 of 5)	5' UTR (NM_008304, exon 1 of 5)	102.0	NM_008304	15529.0	Mm.234266	NM_008304	ENSMUSG00000022261	Sdc2	4833414L08Rik|AA960457|Hspg1|Synd2|syndecan-2	syndecan 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62494944-4	chr11	62494443	62495443	+	965.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039536, intron 2 of 6)	intron (NM_001039536, intron 2 of 6)	36483.0	NM_001039536	327942.0	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109059643-3	chr4	109059130	109060130	+	965.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146150, intron 27 of 30)	intron (NM_146150, intron 27 of 30)	41975.0	NR_030432	791075.0		NR_030432	ENSMUSG00000076444	Mir761	Mirn761|mir-761|mmu-mir-761	microRNA 761	ncRNA	8.0	6.0	5.5	0.5	1.5	9.0
Merged-chr9-100489087-3	chr9	100488576	100489576	+	965.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2603.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	0.0	3.0	2.5	7.5	11.0	10.5
Merged-chr11-116694742-3	chr11	116694179	116695179	+	965.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009180)	promoter-TSS (NM_009180)	-19.0	NM_009180	20446.0	Mm.3947	NM_009180	ENSMUSG00000057286	St6galnac2	II|ST6GalNAc|Siat7|Siat7b	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12371371-4	chr15	12370846	12371846	+	965.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081064, intron 20 of 23)	intron (NM_001081064, intron 20 of 23)	49850.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11513701-4	chr19	11513205	11514205	+	965.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4854.0	NM_027209	69774.0	Mm.436639	NM_027209	ENSMUSG00000024677	Ms4a6b	1810027D10Rik	membrane-spanning 4-domains, subfamily A, member 6B	protein-coding	7.5	17.0	10.5	8.5	17.5	7.5
Merged-chr15-59654657-4	chr15	59654155	59655155	+	965.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144549, exon 3 of 3)	exon (NM_144549, exon 3 of 3)	6001.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-27378250-3	chr10	27377758	27378758	+	965.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008481, intron 4 of 63)	intron (NM_008481, intron 4 of 63)	-11608.0	NR_131034	75855.0	Mm.402080	NR_131034	ENSMUSG00000101636	4930579H20Rik	-	RIKEN cDNA 4930579H20 gene	ncRNA	0.0	2.0	11.0	11.5	11.5	10.5
Merged-chr13-88810293-3	chr13	88809788	88810788	+	965.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11184.0	NM_010103	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44494670-3	chr10	44494168	44495168	+	965.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35920.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-29772849-3	chr5	29772351	29773351	+	965.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359198, intron 8 of 8)	intron (NM_001359198, intron 8 of 8)	-36915.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114906352-2	chr11	114905852	114906852	+	965.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	16311.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-133132160-4	chr1	133131676	133132676	+	965.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133819, exon 1 of 2)	exon (NM_133819, exon 1 of 2)	1010.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-127202449-4	chr1	127201962	127202962	+	965.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2524.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.0	1.0	1.5	0.0	1.5	6.0
Merged-chr16-77128865-4	chr16	77128372	77129372	+	965.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114803.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136194563-4	chr1	136194069	136195069	+	965.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001329610, intron 12 of 22)	L1MEf|LINE|L1	18259.0	NM_001329610	76422.0	Mm.159735	NM_001329610		Mroh3	2310006M14Rik	maestro heat-like repeat family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52204526-4	chr6	52204025	52205025	+	965.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010453)	promoter-TSS (NM_010453)	62.0	NM_010453	15402.0	Mm.173	NM_010453	ENSMUSG00000038253	Hoxa5	Hox-1.3	homeobox A5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108148065-4	chr3	108147571	108148571	+	965.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001305461)	TTS (NM_001305461)	-1919.0	NM_010306	14679.0	Mm.271703	NM_010306	ENSMUSG00000000001	Gnai3	AI158965|AW537698|Galphai3|Gnai-3	guanine nucleotide binding protein (G protein), alpha inhibiting 3	protein-coding	0.0	1.0	1.5	0.0	1.0	1.5
Merged-chr17-87055062-3	chr17	87054584	87055584	+	965.644409	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29523.0	NM_019936	56724.0	Mm.109329	NM_019936	ENSMUSG00000024146	Cript	1200020A08Rik|AA589469	cysteine-rich PDZ-binding protein	protein-coding	3.5	4.5	16.5	4.0	4.5	0.0
Merged-chr11-32561789-6	chr11	32561297	32562297	+	965.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	28531.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	19.0	21.0	34.5	21.0	29.0	31.5
Merged-chr16-87654395-4	chr16	87653910	87654910	+	965.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44544.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64186038-4	chr15	64185563	64186563	+	965.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	-125615.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	27.0	95.0	58.0	26.5	57.5	52.5
Merged-chr9-66158204-4	chr9	66157685	66158685	+	965.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010019)	promoter-TSS (NM_010019)	-41.0	NM_010019	13143.0	Mm.304472	NM_010019	ENSMUSG00000032380	Dapk2	-	death-associated protein kinase 2	protein-coding	0.0	0.5	1.0	3.5	5.0	1.0
Merged-chr7-46839027-4	chr7	46838500	46839500	+	965.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6804.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-43673798-4	chr2	43673300	43674300	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289593, intron 12 of 12)	intron (NM_001289593, intron 12 of 12)	-75024.0	NM_001301832	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111837001-4	chr10	111836518	111837518	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37358.0	NR_046029	629206.0	Mm.391444	NR_046029	ENSMUSG00000112533	Gm20758	-	predicted gene, 20758	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-92337094-4	chr13	92336606	92337606	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311120, intron 8 of 23)	(CACCT)n|Simple_repeat|Simple_repeat	-17677.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	7.5	20.5	5.0	11.5	56.5	20.5
Merged-chr14-70168111-4	chr14	70167621	70168621	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145978, intron 6 of 9)	intron (NM_145978, intron 6 of 9)	-8619.0	NM_001004155	268759.0	Mm.12148	NM_001004155	ENSMUSG00000044551	9930012K11Rik	-	RIKEN cDNA 9930012K11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5605077-4	chr13	5604575	5605575	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	253017.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35127049-4	chr17	35126558	35127558	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_033477, exon 3 of 3)	5' UTR (NM_033477, exon 3 of 3)	656.0	NM_033477	114585.0	Mm.42070	NM_033477	ENSMUSG00000043311	D17H6S53E	G4|NG34	DNA segment, Chr 17, human D6S53E	protein-coding	2.0	9.0	5.0	2.5	10.5	3.0
Merged-chr19-10709564-4	chr19	10709080	10710080	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361959, intron 2 of 3)	intron (NM_001361959, intron 2 of 3)	8812.0	NM_001361964	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-179834238-4	chr1	179833737	179834737	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30222.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30521920-4	chr16	30521415	30522415	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357415, intron 10 of 11)	intron (NM_001357415, intron 10 of 11)	28663.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	4.0	5.5	4.5	3.5	5.5	17.5
Merged-chr6-34956459-4	chr6	34955952	34956952	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025573, intron 4 of 7)	intron (NM_001025573, intron 4 of 7)	21547.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-54449031-4	chr1	54448500	54449500	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9974.0	NM_001033194	98488.0	Mm.25856	NM_001033194	ENSMUSG00000041303	Gtf3c3	TF3C-gamma|TFIIIC102	general transcription factor IIIC, polypeptide 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62191683-4	chr18	62191190	62192190	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11590.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	27.0	92.0	66.0	67.0	112.0	79.5
Merged-chr7-45800690-4	chr7	45800202	45801202	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005511, intron 14 of 15)	intron (NM_001005511, intron 14 of 15)	13614.0	NM_011181	19158.0	Mm.272130	NM_011181	ENSMUSG00000003269	Cyth2	ARNO|CLM2|Pscd2	cytohesin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr15-79436768-4	chr15	79436248	79437248	+	965.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359863, intron 2 of 10)	intron (NM_001359863, intron 2 of 10)	5070.0	NM_001289899	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11022982-4	chr4	11022486	11023486	+	965.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15367.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-157297390-3	chr3	157296891	157297891	+	965.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039094, intron 6 of 6)	intron (NM_001039094, intron 6 of 6)	236699.0	NR_152231	381498.0	Mm.402095	NR_152231	ENSMUSG00000105834	4930592C13Rik	Gm1657|Gm43159	RIKEN cDNA 4930592C13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77253011-3	chr10	77252511	77253511	+	965.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6212.0	NR_026944	100169878.0	Mm.420901	NR_026944	ENSMUSG00000078444	Gm10941	-	predicted gene 10941	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50390335-4	chr17	50389849	50390849	+	965.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-96729.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	22.0	77.0	49.0	8.5	22.0	21.5
Merged-chr3-148982528-4	chr3	148982086	148983086	+	965.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27951.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.0	0.0	6.5	5.0	10.0	5.0
Merged-chr10-57731822-4	chr10	57731322	57732322	+	965.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039050, intron 4 of 4)	intron (NM_001039050, intron 4 of 4)	-53101.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31418227-4	chr15	31417755	31418755	+	965.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35434.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-140679896-4	chr4	140679392	140680392	+	965.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13987.0	NM_001112722	72754.0	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	0.0	11.0	0.5	3.5	1.5	0.0
Merged-chr4-134307745-4	chr4	134307230	134308230	+	965.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7390.0	NM_001039048	433766.0	Mm.331961	NM_001039048	ENSMUSG00000028834	Trim63	MuRF1|RF1|Rnf28	tripartite motif-containing 63	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr11-59392515-4	chr11	59392009	59393009	+	965.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16856.0	NM_001045521	216797.0	Mm.339586	NM_001045521	ENSMUSG00000049291	Prss38	Gm249|Mpn2	protease, serine 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-97055819-4	chr5	97055299	97056299	+	965.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 9 of 15)	intron (NM_080708, intron 9 of 15)	55797.0	NM_001359910	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104039954-4	chr9	104039472	104040472	+	965.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028721, intron 24 of 26)	AT_rich|Low_complexity|Low_complexity	23149.0	NM_025692	66663.0	Mm.224935	NM_025692	ENSMUSG00000032557	Uba5	5730525G14Rik|AW240750|Ube1dc1	ubiquitin-like modifier activating enzyme 5	protein-coding	2.0	8.5	4.5	3.0	6.5	8.0
Merged-chr16-20538110-4	chr16	20537608	20538608	+	965.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302970, intron 2 of 10)	intron (NM_001302970, intron 2 of 10)	2628.0	NM_009679	11773.0	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-71849613-4	chr11	71849073	71850073	+	965.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	90549.0	NR_045942	73816.0	Mm.390391	NR_045942	ENSMUSG00000085528	4930401O10Rik	-	RIKEN cDNA 4930401O10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21853569-4	chr14	21853062	21854062	+	965.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176925, intron 2 of 2)	intron (NM_176925, intron 2 of 2)	-4652.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	9.5	23.0	8.5	9.5	23.0	6.5
Merged-chr15-61983122-2	chr15	61982622	61983622	+	965.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2219.0	NM_001177354	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93647232-2	chr2	93646732	93647732	+	965.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007442, intron 1 of 3)	CpG	4798.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	1.0	0.0	0.0	2.0	0.0	0.0
Merged-chr9-20690697-4	chr9	20690199	20691199	+	965.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357639, intron 1 of 5)	L1_Mus1|LINE|L1	36304.0	NM_001357635	244723.0	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-7876088-2	chr15	7875588	7876588	+	965.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081402, intron 17 of 17)	intron (NM_001081402, intron 17 of 17)	60538.0	NM_001301357	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128798104-2	chr4	128797604	128798604	+	965.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081098, intron 1 of 8)	intron (NM_001081098, intron 1 of 8)	8008.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101378573-2	chr7	101378073	101379073	+	965.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040112, intron 1 of 30)	intron (NM_001040112, intron 1 of 30)	451.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75760859-4	chr11	75760355	75761355	+	965.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009536, intron 5 of 5)	intron (NM_009536, intron 5 of 5)	27968.0	NM_009536	22627.0	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	4.0	0.0	2.0	0.0	0.0	2.0
Merged-chr8-72135778-4	chr8	72135265	72136265	+	965.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001491, intron 1 of 7)	CpG	473.0	NM_001001491	326618.0	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	53.5	72.0	45.0	40.5	78.5	54.5
Merged-chr18-36375367-2	chr18	36374867	36375867	+	965.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081365, intron 2 of 2)	intron (NM_001081365, intron 2 of 2)	26743.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31187120-2	chr14	31186620	31187620	+	965.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_022656, exon 10 of 21)	exon (NM_022656, exon 10 of 21)	-18479.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115334681-3	chr6	115334180	115335180	+	965.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA7|LINE|L1	-26271.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-9907256-4	chr1	9906762	9907762	+	965.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1376.0	NM_177722	240697.0	Mm.259800	NM_177722	ENSMUSG00000046101	Mcmdc2	6030422M02Rik	minichromosome maintenance domain containing 2	protein-coding	7.5	0.5	0.5	0.0	1.0	3.5
Merged-chr3-142562217-2	chr3	142561717	142562717	+	965.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355403, intron 3 of 11)	RMER17C|LTR|ERVK	1861.0	NM_001289493	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	5.0	2.5	2.5	2.0	9.5	3.0
Merged-chr2-93473374-2	chr2	93472874	93473874	+	965.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(ATG)n|Simple_repeat|Simple_repeat	-10424.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	5.5	0.0	1.0	6.0	0.0	0.0
Merged-chr3-16551743-2	chr3	16551243	16552243	+	965.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-265351.0	NR_153388	102632048.0	Mm.417635	NR_153388		Gm30223	-	predicted gene, 30223	ncRNA	1.0	2.5	1.0	1.0	2.5	1.0
Merged-chr19-14668651-4	chr19	14668136	14669136	+	965.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70453.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87517273-4	chr6	87516778	87517778	+	965.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	15981.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	17.5	23.5	15.5	18.0	43.5	13.5
Merged-chr6-124380383-4	chr6	124379874	124380874	+	965.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-15888.0	NR_131162	72268.0	Mm.420740	NR_131162		1700027F06Rik	-	RIKEN cDNA 1700027F06 gene	ncRNA	0.0	3.5	0.0	0.0	0.0	0.0
Merged-chr17-25681827-4	chr17	25681286	25682286	+	965.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35386.0	NM_022422	64337.0	Mm.171123	NM_022422	ENSMUSG00000025739	Gng13	1500031D04Rik|AB030194|Ggamma13	guanine nucleotide binding protein (G protein), gamma 13	protein-coding	6.0	10.0	9.5	24.0	11.0	7.5
Merged-chr17-25728484-2	chr17	25727984	25728984	+	965.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028009, intron 2 of 5)	intron (NM_028009, intron 2 of 5)	767.0	NM_001357176	106707.0	Mm.24603	NM_028009	ENSMUSG00000041199	Rpusd1	2310051D06Rik|AU019540|Rlucl	RNA pseudouridylate synthase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44066584-4	chr16	44066086	44067086	+	965.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	-24578.0	NM_001359085	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119338526-2	chr9	119338026	119339026	+	965.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010851, intron 2 of 5)	intron (NM_010851, intron 2 of 5)	1514.0	NM_010851	17874.0	Mm.213003	NM_010851	ENSMUSG00000032508	Myd88	-	myeloid differentiation primary response gene 88	protein-coding	9.5	7.5	7.5	8.0	40.0	9.5
Merged-chr2-128688435-2	chr2	128687935	128688935	+	965.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1040.0	NM_008569	17222.0	Mm.277408	NM_008569	ENSMUSG00000014355	Anapc1	2610021O03Rik|AI047775|AI853536|AW547281|Apc1|Mcpr|tsg24	anaphase promoting complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47227813-2	chr19	47227313	47228313	+	965.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021360, intron 1 of 5)	intron (NM_021360, intron 1 of 5)	-1030.0	NM_001163480	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	2.5
Merged-chr1-152535964-2	chr1	152535464	152536464	+	965.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 12 of 17)	intron (NM_016846, intron 12 of 17)	89253.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-73473772-4	chr16	73473270	73474270	+	965.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	810621.0	NM_019413	19876.0	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115629796-2	chr11	115629315	115630315	+	965.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1520.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113673124-2	chr5	113672624	113673624	+	965.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-22734.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30009800-3	chr16	30009304	30010304	+	965.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033631, intron 1 of 2)	intron (NR_033631, intron 1 of 2)	1137.0	NR_033631	100043102.0	Mm.30797	NR_033631	ENSMUSG00000097184	4632428C04Rik	Gm4231	RIKEN cDNA 4632428C04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71633342-4	chr8	71632827	71633827	+	965.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 39 of 41)	intron (NM_001029873, intron 39 of 41)	-2221.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	13.0	5.0	3.5	14.0	11.0	2.0
Merged-chr16-94223247-5	chr16	94222770	94223770	+	965.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 6 of 10)	intron (NM_001360045, intron 6 of 10)	67021.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117952292-4	chr10	117951792	117952792	+	965.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26833.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101906582-4	chr13	101906078	101907078	+	965.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138361.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-135474362-4	chr2	135473869	135474869	+	965.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019677, exon 33 of 33)	3' UTR (NM_019677, exon 33 of 33)	108851.0	NR_015544	320684.0	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120835284-4	chr14	120834699	120835699	+	965.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-75995.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118638857-4	chr9	118638372	118639372	+	965.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	32163.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-49567820-4	chr4	49567314	49568314	+	965.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18268.0	NM_144903	230163.0	Mm.482116	NM_144903	ENSMUSG00000028307	Aldob	Aldo-2|Aldo2|BC016435	aldolase B, fructose-bisphosphate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-26015376-4	chr18	26014875	26015875	+	965.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-261218.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77537857-3	chr10	77537378	77538378	+	965.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 1 of 15)	intron (NM_008404, intron 1 of 15)	7530.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73898897-3	chr12	73898405	73899405	+	965.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2419.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19024860-4	chr7	19024335	19025335	+	965.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360713, intron 1 of 22)	intron (NM_001360713, intron 1 of 22)	458.0	NM_026605	68188.0	Mm.130902	NM_026605	ENSMUSG00000023118	Sympk	1500016F02Rik|4632415H16Rik|AA125406|AI449890|SPK|SYM	symplekin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43185006-4	chr5	43184513	43185513	+	965.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 5 of 7)	ORR1E|LTR|ERVL-MaLR	-48450.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	9.0	40.0	33.5	10.5	32.5	35.5
Merged-chr6-16896643-4	chr6	16896152	16897152	+	965.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 1 of 6)	Lx3C|LINE|L1	1789.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139220501-4	chr7	139219999	139220999	+	965.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001143755, intron 4 of 8)	intron (NM_001143755, intron 4 of 8)	-7192.0	NM_001162540	57740.0	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	28.5	27.0	31.5	14.5	8.5	4.5
Merged-chr3-59175441-4	chr3	59174930	59175930	+	965.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	19674.0	NM_001302203	84111.0	Mm.60267	NM_032399	ENSMUSG00000051431	Gpr87	-	G protein-coupled receptor 87	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5401693-4	chr18	5401209	5402209	+	965.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66902.0	NM_001360447	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73613305-4	chr12	73612809	73613809	+	965.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	28513.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	10.5	39.0	32.0	20.0	27.5	31.5
Merged-chr11-70166566-4	chr11	70166064	70167064	+	965.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010796)	promoter-TSS (NM_010796)	-59.0	NM_001204252	17312.0	Mm.252405	NM_010796	ENSMUSG00000000318	Clec10a	CD301a|M-ASGP-BP-1|Mgl|Mgl1	C-type lectin domain family 10, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-16104476-4	chr16	16103981	16104981	+	965.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 5 of 18)	RMER1B|Other|Other	42370.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4295572-4	chr19	4295049	4296049	+	965.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	10673.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76377954-4	chr12	76377456	76378456	+	965.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178744, intron 1 of 1)	intron (NM_178744, intron 1 of 1)	7690.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119076731-5	chr9	119076347	119077347	+	965.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019676, intron 3 of 14)	intron (NM_019676, intron 3 of 14)	11414.0	NM_001293648	18799.0	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding	12.0	4.0	14.0	4.5	11.5	9.5
Merged-chr19-33102207-3	chr19	33101715	33102715	+	965.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54897.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36483959-3	chr5	36483455	36484455	+	965.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025725)	promoter-TSS (NM_025725)	330.0	NM_001170454	231151.0	Mm.421558	NM_001170454	ENSMUSG00000029196	Tada2b	AA474455|Gm145	transcriptional adaptor 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10862327-2	chr19	10861827	10862827	+	965.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_133804, intron 7 of 10)	intron (NM_133804, intron 7 of 10)	7452.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63765243-4	chr4	63764724	63765724	+	965.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20111.0	NM_177371	326623.0	Mm.208152	NM_177371	ENSMUSG00000050395	Tnfsf15	Tl1|Tl1a|Tnlg1b|Vegi	tumor necrosis factor (ligand) superfamily, member 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44858103-4	chr7	44857612	44858612	+	965.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290764, intron 2 of 16)	intron (NM_001290764, intron 2 of 16)	709.0	NM_001290767	59047.0	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	4.0	0.0	8.5	5.5	4.0	2.5
Merged-chr7-3675102-4	chr7	3674573	3675573	+	965.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_181820, exon 4 of 15)	exon (NM_181820, exon 4 of 15)	2480.0	NM_181820	353499.0	Mm.360398	NM_181820	ENSMUSG00000019734	Tmc4	-	transmembrane channel-like gene family 4	protein-coding	1.0	0.0	0.0	0.5	0.0	0.0
Merged-chr12-86082543-4	chr12	86082054	86083054	+	965.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199843)	promoter-TSS (NM_001199843)	-7.0	NM_029601	76411.0	Mm.292345	NM_029601	ENSMUSG00000007867	Ift43	1700019E19Rik|R75064	intraflagellar transport 43	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-54074892-11	chr10	54074386	54075386	+	965.339417	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008548, exon 2 of 13)	exon (NM_008548, exon 2 of 13)	910.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151568924-2	chr1	151568424	151569424	+	965.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-2449.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12947923-4	chr18	12947444	12948444	+	965.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6103.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86364049-4	chr15	86363506	86364506	+	965.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358062, intron 6 of 9)	intron (NM_001358062, intron 6 of 9)	86331.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-76393303-3	chr13	76392807	76393807	+	965.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030174, intron 1 of 20)	intron (NM_030174, intron 1 of 20)	8346.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	19.0	9.0	3.0	3.0	10.5	18.5
Merged-chr10-8885393-3	chr10	8884888	8885888	+	965.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	682.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	61.0	168.0	98.0	50.5	92.0	55.0
Merged-chr18-9494004-3	chr18	9493496	9494496	+	965.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43842.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-137919108-3	chr3	137918613	137919613	+	965.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019920, intron 2 of 6)	intron (NM_019920, intron 2 of 6)	558.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	64.5	88.5	79.0	35.5	110.0	88.5
Merged-chr4-148498842-4	chr4	148498325	148499325	+	965.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039554, intron 1 of 4)	B2_Mm1t|SINE|B2	1637.0	NM_001039554	654812.0	Mm.388929	NM_001039554	ENSMUSG00000028989	Angptl7	-	angiopoietin-like 7	protein-coding	7.0	30.0	24.5	24.0	76.5	55.5
Merged-chr8-56328399-4	chr8	56327901	56328901	+	965.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33849.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	41.5	16.5	15.0	12.0	13.0	11.0
Merged-chr1-191025505-3	chr1	191025037	191026037	+	965.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027298, exon 1 of 2)	non-coding (NR_027298, exon 1 of 2)	186.0	NR_027298	100125339.0	Mm.472263	NR_027298	ENSMUSG00000097845	A230020J21Rik	-	RIKEN cDNA A230020J21 gene	ncRNA	1.0	17.0	14.0	3.5	9.5	8.0
Merged-chr8-36995459-4	chr8	36994994	36995994	+	965.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001039220)	TTS (NM_001039220)	1919.0	NM_001039220	621080.0	Mm.373292	NM_001039220	ENSMUSG00000074384	AI429214	-	expressed sequence AI429214	protein-coding	16.0	39.5	32.5	20.5	33.0	29.5
Merged-chr1-131153159-4	chr1	131152648	131153648	+	965.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136070)	promoter-TSS (NM_001136070)	-59.0	NM_001136070	16865.0	Mm.276294	NM_010709	ENSMUSG00000026427	Eif2d	D1Ertd5e|Lgtn	eukaryotic translation initiation factor 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-75558652-6	chr9	75558194	75559194	+	965.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357828, intron 1 of 10)	intron (NM_001357828, intron 1 of 10)	963.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102867868-4	chr14	102867361	102868361	+	965.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114771.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102907071-4	chr14	102906560	102907560	+	965.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75572.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34511280-4	chr19	34510801	34511801	+	965.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	16173.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32534278-4	chr17	32533778	32534778	+	965.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2279.0	NM_001356302	70101.0	Mm.30504	NM_024442	ENSMUSG00000048440	Cyp4f16	2310021J05Rik|AI746515	cytochrome P450, family 4, subfamily f, polypeptide 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102032039-4	chr7	102031555	102032555	+	965.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 4 of 8)	intron (NM_029211, intron 4 of 8)	-13900.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-72984385-4	chr2	72983886	72984886	+	965.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045269, intron 1 of 2)	intron (NR_045269, intron 1 of 2)	-3940.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55754444-3	chr13	55753944	55754944	+	965.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028281, intron 2 of 3)	intron (NM_028281, intron 2 of 3)	27076.0	NM_028281	72562.0	Mm.28145	NM_028281	ENSMUSG00000021496	Pcbd2	2700061N24Rik|Dcoh2|Dcohm	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2	protein-coding	1.0	0.0	0.0	0.0	0.0	0.5
Merged-chr5-149274779-8	chr5	149274287	149275287	+	965.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308462, intron 2 of 3)	MT2B|LTR|ERVL	9783.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38467584-4	chr16	38467073	38468073	+	965.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359898, intron 1 of 5)	intron (NM_001359898, intron 1 of 5)	8640.0	NM_009855	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-11276722-7	chr12	11276209	11277209	+	965.2551269999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361252, intron 4 of 9)	(TG)n|Simple_repeat|Simple_repeat	10823.0	NM_025695	67241.0	Mm.173953	NM_025695	ENSMUSG00000020608	Smc6	2810489L22Rik|3830418C19Rik|AA990493|AU018782|AW742439|SMC-6|Smc6l1|mKIAA4103	structural maintenance of chromosomes 6	protein-coding	9.0	0.5	1.5	7.5	20.0	7.5
Merged-chr13-3637051-4	chr13	3636546	3637546	+	965.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267724, intron 1 of 3)	intron (NM_001267724, intron 1 of 3)	3014.0	NM_001267724	142688.0	Mm.253061	NM_178283	ENSMUSG00000033781	Asb13	2210015B19Rik|6430573K02Rik|Asb-13|C85285	ankyrin repeat and SOCS box-containing 13	protein-coding	23.0	60.5	42.0	15.0	52.0	26.0
Merged-chr17-12252338-4	chr17	12251834	12252834	+	965.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357722, intron 11 of 25)	RLTR44A|LTR|ERVK	66326.0	NM_011948	26407.0	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-33316637-4	chr12	33316120	33317120	+	965.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033436, intron 1 of 7)	intron (NM_001033436, intron 1 of 7)	14105.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	8.0	27.5	9.5	7.5	4.0	9.0
Merged-chr7-31157183-4	chr7	31156665	31157665	+	965.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5193.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97523325-4	chr6	97522828	97523828	+	965.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-35508.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	10.0	7.5	6.0	4.5	7.0	13.0
Merged-chr13-24633326-4	chr13	24632812	24633812	+	965.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178658, intron 1 of 13)	(CAAAA)n|Simple_repeat|Simple_repeat	-5336.0	NM_001080381	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132151143-4	chr2	132150640	132151640	+	965.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5820.0	NM_001355430	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65844659-4	chr9	65844149	65845149	+	965.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357872, intron 12 of 13)	intron (NM_001357872, intron 12 of 13)	-17085.0	NM_172536	214812.0	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38823990-4	chr6	38823483	38824483	+	965.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 1 of 14)	intron (NM_010433, intron 1 of 14)	13328.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82128697-2	chr15	82128197	82129197	+	965.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_137170, intron 1 of 5)	MIRc|SINE|MIR	722.0	NR_137170	76457.0	Mm.440373	NM_172428	ENSMUSG00000068114	Ccdc134	2310042L06Rik|AW208859	coiled-coil domain containing 134	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79658040-3	chr15	79657536	79658536	+	965.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029407, intron 1 of 17)	intron (NM_029407, intron 1 of 17)	920.0	NM_029407	75729.0	Mm.78946	NM_029407	ENSMUSG00000042564	Fam227a	4933432B09Rik	family with sequence similarity 227, member A	protein-coding	0.0	5.0	0.5	2.5	0.0	0.0
Merged-chr8-57596096-4	chr8	57595580	57596580	+	965.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 1 of 11)	intron (NM_001167981, intron 1 of 11)	-55673.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	0.0	1.0	2.0	0.0	2.5	2.0
Merged-chr5-72891678-4	chr5	72891191	72892191	+	965.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22671.0	NM_001113423	75991.0	Mm.121285	NM_153567	ENSMUSG00000036087	Slain2	5033405K12Rik|8030444K12Rik|AI596370	SLAIN motif family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125551273-4	chr7	125550778	125551778	+	965.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1004.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	0.0	3.0	3.0	0.0	1.0	2.5
Merged-chr7-12910369-4	chr7	12909878	12910878	+	965.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11933.0	NM_009095	20103.0	Mm.5291	NM_009095	ENSMUSG00000012848	Rps5	AA617411	ribosomal protein S5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128337398-4	chr2	128336900	128337900	+	965.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028590, intron 1 of 2)	intron (NR_028590, intron 1 of 2)	91951.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	16.5	8.5	14.0	15.5	52.0	26.5
Merged-chr5-105528232-3	chr5	105527768	105528768	+	965.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 1 of 3)	intron (NM_133897, intron 1 of 3)	8797.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	3.0	1.5	5.0	8.0	13.5	19.5
Merged-chr10-19017337-2	chr10	19016837	19017837	+	965.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1927.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95682027-4	chr9	95681541	95682541	+	965.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 5 of 8)	MTB_Mm|LTR|ERVL-MaLR	44413.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-140701947-4	chr4	140701450	140702450	+	965.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173867, intron 1 of 12)	CpG	477.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-78918405-4	chr12	78917912	78918912	+	965.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11474.0	NM_013738	27260.0	Mm.103380	NM_013738	ENSMUSG00000021118	Plek2	-	pleckstrin 2	protein-coding	1.5	0.0	3.5	0.0	0.0	2.0
Merged-chr2-180996618-2	chr2	180996124	180997124	+	965.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_028518, intron 8 of 35)	intron (NM_028518, intron 8 of 35)	10089.0	NM_028518	73368.0	Mm.345095	NM_028518	ENSMUSG00000016356	Col20a1	1700051I12Rik	collagen, type XX, alpha 1	protein-coding	3.5	0.0	1.5	1.0	0.0	1.0
Merged-chr6-6216591-3	chr6	6216096	6217096	+	965.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177572, intron 1 of 17)	intron (NM_001177572, intron 1 of 17)	577.0	NM_015829	50799.0	Mm.24513	NM_015829	ENSMUSG00000015112	Slc25a13	AI785475|Ctrn	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95826999-2	chr15	95826499	95827499	+	965.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_155276, intron 1 of 1)	intron (NR_155276, intron 1 of 1)	3073.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115700426-4	chr11	115699927	115700927	+	965.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313937)	promoter-TSS (NM_001313937)	-499.0	NM_001313936	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-6163190-4	chr18	6162704	6163704	+	965.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27106.0	NM_001039692	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105747374-4	chr1	105746815	105747815	+	965.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173187, intron 26 of 28)	intron (NM_173187, intron 26 of 28)	-33408.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	18.0	49.0	17.0	13.0	43.0	36.5
Merged-chr13-113036090-4	chr13	113035601	113036601	+	965.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_030452)	TTS (NR_030452)	118.0	NR_030452	735309.0		NR_030452	ENSMUSG00000076146	Mir449c	Mirn449b|Mirn449c|mir-449c	microRNA 449c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-60273529-4	chr14	60273002	60274002	+	965.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144843, intron 1 of 13)	intron (NM_144843, intron 1 of 13)	8297.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5841404-11	chr17	5840857	5841857	+	965.113647	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025664)	promoter-TSS (NM_025664)	-23.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-33619064-3	chr8	33618552	33619552	+	965.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178648)	TTS (NM_178648)	19431.0	NM_017374	19053.0	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	18.5	51.0	39.5	1.0	1.5	2.5
Merged-chr12-3745941-3	chr12	3745426	3746426	+	965.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 12 of 17)	intron (NM_001162465, intron 12 of 17)	-61054.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119809730-4	chr13	119809249	119810249	+	965.1083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18627.0	NM_001302550	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76350637-4	chr15	76350106	76351106	+	965.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164608)	promoter-TSS (NM_001164608)	504.0	NM_025340	106025.0	Mm.41463	NM_025340	ENSMUSG00000022552	Sharpin	0610041B22Rik|AW121341|RBCKL1|SIPL1|cpdm	SHANK-associated RH domain interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105894848-4	chr3	105894316	105895316	+	965.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-9605.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129741394-4	chr4	129740907	129741907	+	965.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011317, intron 1 of 8)	CpG	896.0	NM_011317	20218.0	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	2.0	16.0	12.0	0.5	14.0	14.5
Merged-chr6-135261304-4	chr6	135260798	135261798	+	965.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6962.0	NM_001080553	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	1.5	1.0	1.0	4.0	15.0	0.5
Merged-chr14-73120186-4	chr14	73119690	73120690	+	965.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22320.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45489849-4	chr4	45489347	45490347	+	965.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	40981.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	3.0	7.5	1.0	3.0	7.5	1.0
Merged-chr12-69364197-4	chr12	69363706	69364706	+	965.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7030.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53437511-4	chr4	53437002	53438002	+	965.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2911.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	1.5	2.0	1.0	0.0	8.0	2.0
Merged-chr2-30708025-4	chr2	30707507	30708507	+	965.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-13203.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127289067-3	chr3	127288564	127289564	+	965.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	RMER5|LTR|ERV1	119994.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	14.5	17.0	19.0	0.0	2.0	5.0
Merged-chr16-76217846-3	chr16	76217330	76218330	+	965.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	95217.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5034793-4	chr2	5034294	5035294	+	965.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356487, intron 8 of 13)	intron (NM_001356487, intron 8 of 13)	-22003.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24851605-4	chr17	24851101	24852101	+	965.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159626, intron 1 of 8)	intron (NM_001159626, intron 1 of 8)	934.0	NM_001159626	14651.0	Mm.43784	NM_024284	ENSMUSG00000024158	Hagh	BC019817|Glo-2|Glo2|Rsp29	hydroxyacyl glutathione hydrolase	protein-coding	50.5	111.5	97.0	79.0	151.0	142.0
Merged-chr11-106076504-4	chr11	106076002	106077002	+	965.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8400.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-4054626-4	chr6	4054123	4055123	+	965.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7039.0	NR_131108	78034.0	Mm.243851	NR_131108	ENSMUSG00000107681	4930528H21Rik	Gm43986	RIKEN cDNA 4930528H21 gene	ncRNA	2.0	1.5	1.0	1.0	5.5	1.5
Merged-chr7-141395028-4	chr7	141394528	141395528	+	965.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011528, intron 1 of 7)	intron (NM_011528, intron 1 of 7)	2868.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-68361266-4	chr15	68360771	68361771	+	965.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19982.0	NR_029718	387228.0		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	26.0	64.0	49.5	16.5	58.0	26.0
Merged-chr2-120159081-4	chr2	120158588	120159588	+	965.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4513.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	11.5	33.0	17.5	10.0	22.5	18.5
Merged-chr1-184235788-4	chr1	184235287	184236287	+	965.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	201406.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65884568-2	chr3	65884070	65885070	+	965.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73679.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	5.0	0.0	0.0	0.0	3.5	0.0
Merged-chr2-30730959-2	chr2	30730459	30731459	+	965.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9749.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-33856306-2	chr14	33855806	33856806	+	965.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-45023.0	NR_131113	218902.0	Mm.107791	NR_131113	ENSMUSG00000115751	4930503F20Rik	4930453C15	RIKEN cDNA 4930503F20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71529199-2	chr2	71528699	71529699	+	965.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010053)	promoter-TSS (NM_010053)	-246.0	NM_010053	13390.0	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-138885770-3	chr7	138885266	138886266	+	965.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23740.0	NM_009760	12176.0	Mm.378890	NM_009760	ENSMUSG00000078566	Bnip3	Nip3	BCL2/adenovirus E1B interacting protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49198051-2	chr13	49197551	49198551	+	965.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10504.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3128452-2	chr11	3127942	3128942	+	965.0	f0_balb.idr|f1_balb.idr	intron (NR_003517, intron 3 of 6)	intron (NR_003517, intron 3 of 6)	4421.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32361613-2	chr4	32361113	32362113	+	965.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR16|LTR|ERVK	-55822.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106318335-2	chr9	106317903	106318903	+	965.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 9 of 10)	intron (NM_027354, intron 9 of 10)	37342.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	2.5	4.0	6.5	12.0	15.0	6.5
Merged-chr13-81233069-4	chr13	81232542	81233542	+	965.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 85 of 89)	MIR|SINE|MIR	268968.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46834105-2	chr8	46833605	46834605	+	965.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008391, intron 6 of 8)	intron (NM_008391, intron 6 of 8)	94360.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99994628-3	chr12	99994125	99995125	+	965.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	30126.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141162147-2	chr4	141161647	141162647	+	965.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172518, intron 1 of 9)	intron (NM_172518, intron 1 of 9)	14225.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80789623-2	chr7	80789123	80790123	+	965.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	13708.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100837330-3	chr13	100836837	100837837	+	965.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3910.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127420793-4	chr10	127420307	127421307	+	965.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168293)	promoter-TSS (NM_001168293)	-60.0	NM_027900	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-115312415-4	chr10	115311932	115312932	+	965.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024454, intron 1 of 6)	intron (NM_024454, intron 1 of 6)	3159.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34929170-2	chr18	34928670	34929670	+	965.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144866, intron 2 of 10)	intron (NM_144866, intron 2 of 10)	2833.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84734014-4	chr2	84733519	84734519	+	965.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005342)	promoter-TSS (NM_001005342)	-185.0	NM_001005342	241525.0	Mm.486398	NM_001005342	ENSMUSG00000034059	Ypel4	-	yippee like 4	protein-coding	3.5	0.0	1.0	0.0	0.0	0.0
Merged-chr3-118064144-2	chr3	118063644	118064644	+	965.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-195208.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25743030-3	chr8	25742543	25743543	+	965.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361595, intron 7 of 15)	B3A|SINE|B2	11237.0	NM_028102	72108.0	Mm.246875	NM_028102	ENSMUSG00000061313	Ddhd2	2010305K11Rik|SAMWD1|mKIAA0725	DDHD domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6300548-3	chr19	6300058	6301058	+	965.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010119)	TTS (NM_010119)	-5899.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-75444598-2	chr9	75444098	75445098	+	965.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039522, intron 1 of 11)	intron (NM_001039522, intron 1 of 11)	3074.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	3.0	0.0	1.0	0.0	1.5	0.0
Merged-chr12-26436564-3	chr12	26436105	26437105	+	965.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19847.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	6.5	20.5	9.5	42.0	93.0	87.0
Merged-chr2-72372485-2	chr2	72371985	72372985	+	965.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 7 of 19)	intron (NM_023057, intron 7 of 19)	86784.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117520180-2	chr5	117519680	117520680	+	965.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 3 of 19)	intron (NM_001312914, intron 3 of 19)	106178.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0.0	0.0	2.0	0.0	1.0	5.5
Merged-chr15-68009771-2	chr15	68009271	68010271	+	965.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	249085.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0.0	4.0	0.0	0.0	0.0	0.5
Merged-chr13-54206446-3	chr13	54205928	54206928	+	965.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153432, intron 1 of 3)	intron (NR_153432, intron 1 of 3)	14295.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	0.0	3.0	1.5	0.0	10.0	1.0
Merged-chr4-8804107-3	chr4	8803618	8804618	+	965.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 3 of 36)	intron (NM_001355382, intron 3 of 36)	52794.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	4.0	6.5	0.0	1.0	5.0	1.0
Merged-chr13-81689921-2	chr13	81689421	81690421	+	965.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081176, intron 3 of 7)	Lx7|LINE|L1	21092.0	NM_001081176	67486.0	Mm.279781	NM_001081176	ENSMUSG00000035834	Polr3g	2310047G20Rik|AV275904|RPC32|RPC7	polymerase (RNA) III (DNA directed) polypeptide G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-30506976-4	chr17	30506501	30507501	+	964.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172618, intron 6 of 11)	intron (NM_172618, intron 6 of 11)	69286.0	NM_172618	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27982728-4	chr3	27982196	27983196	+	964.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164056, intron 2 of 26)	intron (NM_001164056, intron 2 of 26)	-1475.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134630604-4	chr6	134630088	134631088	+	964.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026345, intron 1 of 3)	Charlie4a|DNA|hAT-Charlie	1900.0	NM_026345	67729.0	Mm.57648	NM_026345	ENSMUSG00000032718	Mansc1	9130403P13Rik	MANSC domain containing 1	protein-coding	10.5	1.5	5.5	8.5	2.0	3.0
Merged-chr2-167377911-4	chr2	167377398	167378398	+	964.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28720.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64676432-4	chr5	64675928	64676928	+	964.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65729.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	2.5	11.5	9.5	3.5	5.5	4.0
Merged-chr16-94590478-4	chr16	94589975	94590975	+	964.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	19568.0	NM_001113389	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118483500-4	chr11	118482990	118483990	+	964.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153103, intron 7 of 13)	intron (NR_153103, intron 7 of 13)	6658.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130030019-3	chr2	130029527	130030527	+	964.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009374, exon 7 of 13)	exon (NM_009374, exon 7 of 13)	-13619.0	NR_105757	102466628.0		NR_105757	ENSMUSG00000098347	Mir6339	Gm27848|mmu-mir-6339	microRNA 6339	ncRNA	8.0	16.0	5.0	0.0	1.5	3.0
Merged-chr13-21832143-4	chr13	21831634	21832634	+	964.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175657).2	promoter-TSS (NM_175657).2	24.0	NM_175657	319161.0	Mm.261664	NM_175657	ENSMUSG00000069305	Hist1h4n	-	histone cluster 1, H4n	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164007101-4	chr2	164006607	164007607	+	964.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018753, intron 1 of 5)	RLTR26B_MM|LTR|ERVK	11910.0	NM_018753	54401.0	Mm.34319	NM_018753	ENSMUSG00000018326	Ywhab	1300003C17Rik|14-3-3b	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	protein-coding	3.5	4.0	4.5	10.0	4.5	7.5
Merged-chr18-56754906-3	chr18	56754427	56755427	+	964.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47114.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76091712-4	chr15	76091197	76092197	+	964.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358359)	promoter-TSS (NM_001358359)	-7.0	NM_001358359	223649.0	Mm.101946	NM_144847	ENSMUSG00000075590	Nrbp2	BC011468	nuclear receptor binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8787820-4	chr11	8787317	8788317	+	964.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123282.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139204794-4	chr4	139204273	139205273	+	964.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	10662.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	33.0	113.5	87.5	31.0	58.5	50.5
Merged-chr6-87537046-4	chr6	87536516	87537516	+	964.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3757.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	8.5	0.5	4.0	4.5	16.0	7.0
Merged-chr1-144245898-3	chr1	144245369	144246369	+	964.892883	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015811, intron 4 of 4)	intron (NM_015811, intron 4 of 4)	3235.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123283144-3	chr8	123282641	123283641	+	964.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016925, intron 28 of 42)	B1F1|SINE|Alu	-28919.0	NM_028200	72325.0	Mm.276193	NM_028200	ENSMUSG00000001062	Vps9d1	1300018I17Rik|2410004N05Rik|5DOS1|Vsp9d1	VPS9 domain containing 1	protein-coding	5.5	13.0	5.5	6.0	10.5	7.0
Merged-chr10-127167453-4	chr10	127166948	127167948	+	964.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027739, intron 3 of 9)	intron (NM_027739, intron 3 of 9)	1617.0	NM_001358578	14421.0	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-13603329-4	chr6	13602805	13603805	+	964.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028990, exon 2 of 5)	exon (NM_028990, exon 2 of 5)	4793.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120883606-2	chr10	120883179	120884179	+	964.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_177092, intron 1 of 6)	GA-rich|Low_complexity|Low_complexity	15292.0	NM_177092	320183.0	Mm.169755	NM_177092	ENSMUSG00000051236	Msrb3	D430026P16Rik|I-8-23|MsrB2	methionine sulfoxide reductase B3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138231669-3	chr5	138231169	138232169	+	964.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013773, intron 2 of 5)	intron (NM_001013773, intron 2 of 5)	5765.0	NM_001013773	381680.0	Mm.156846	NM_001013773	ENSMUSG00000047592	Nxpe5	-	neurexophilin and PC-esterase domain family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95433639-4	chr3	95433132	95434132	+	964.8583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009709)	promoter-TSS (NM_009709)	-758.0	NM_009709	11863.0	Mm.250265	NM_009709	ENSMUSG00000015522	Arnt	D3Ertd557e|Drnt|ESTM42|Hif1b|W08714|bHLHe2|mKIAA4051	aryl hydrocarbon receptor nuclear translocator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38313552-2	chr2	38313052	38314052	+	964.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25729.0	NM_001290646	16870.0	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115624238-4	chr5	115623741	115624741	+	964.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7575.0	NR_027810	66123.0	Mm.133063	NM_021417	ENSMUSG00000107121	1110006O24Rik	-	RIKEN cDNA 1110006O24 gene	ncRNA	0.0	8.5	8.0	0.0	1.5	3.5
Merged-chr16-22353860-4	chr16	22353361	22354361	+	964.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58873.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-110597673-3	chr13	110597186	110598186	+	964.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	202642.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111726352-4	chr8	111725868	111726868	+	964.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009954, intron 1 of 6)	intron (NM_009954, intron 1 of 6)	5768.0	NM_001198839	12927.0	Mm.3758	NM_009954	ENSMUSG00000031955	Bcar1	AI385681|Cas|Crkas	breast cancer anti-estrogen resistance 1	protein-coding	1.0	1.5	4.5	1.0	1.5	3.5
Merged-chr18-57844699-3	chr18	57844177	57845177	+	964.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34001.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	5.0	59.0	30.5	13.5	53.5	28.0
Merged-chr16-76786607-4	chr16	76786118	76787118	+	964.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7526.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-133525659-5	chr3	133525115	133526115	+	964.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040400, intron 1 of 10)	B1_Mus1|SINE|Alu	18775.0	NM_001040400	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27373646-4	chr2	27373158	27374158	+	964.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 1 of 29)	MTC|LTR|ERVL-MaLR	53950.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44242780-4	chr16	44242201	44243201	+	964.792847	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198034, intron 24 of 24)	intron (NM_198034, intron 24 of 24)	69304.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180045529-4	chr2	180045030	180046030	+	964.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178750, intron 1 of 10)	intron (NM_178750, intron 1 of 10)	3047.0	NM_178750	269397.0	Mm.63068	NM_178750	ENSMUSG00000039086	Ss18l1	A230053O16Rik|CREST	SS18, nBAF chromatin remodeling complex subunit like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-53863688-4	chr10	53863198	53864198	+	964.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112789.0	NM_001081428	75906.0	Mm.436785	NM_001081428	ENSMUSG00000019856	Fam184a	3110012E06Rik|4930438C08Rik|4930589M24Rik	family with sequence similarity 184, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-107866603-4	chr5	107866112	107867112	+	964.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007964, intron 1 of 17)	HAL1|LINE|L1	8495.0	NM_007964	14020.0	Mm.35796	NM_007964	ENSMUSG00000011831	Evi5	NB4S	ecotropic viral integration site 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123635593-4	chr4	123635091	123636091	+	964.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	19171.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-59617336-4	chr16	59616806	59617806	+	964.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019665, intron 7 of 7)	intron (NM_019665, intron 7 of 7)	-19639.0	NR_040564	75145.0	Mm.399348	NR_040564		4930547E14Rik	-	RIKEN cDNA 4930547E14 gene	ncRNA	19.0	3.0	5.5	12.0	1.0	10.0
Merged-chr18-79327756-4	chr18	79327199	79328199	+	964.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-218308.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132317592-4	chr1	132317097	132318097	+	964.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195025, intron 1 of 7)	intron (NM_001195025, intron 1 of 7)	1472.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-26438112-3	chr4	26437613	26438613	+	964.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91461.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56981223-3	chr18	56980687	56981687	+	964.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-5808.0	NM_029909	77422.0	Mm.256874	NM_029909	ENSMUSG00000024592	C330018D20Rik	AU018666	RIKEN cDNA C330018D20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-31732443-3	chr11	31731918	31732918	+	964.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60556.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	106.0	277.0	217.5	0.0	22.5	11.5
Merged-chr11-62606449-2	chr11	62605949	62606949	+	964.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357955, intron 3 of 3)	intron (NM_001357955, intron 3 of 3)	1919.0	NR_028541	100217444.0		NR_028541		Snord65	MBII-135|snoRNA135	small nucleolar RNA, C/D box 65	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-68756985-4	chr7	68756492	68757492	+	964.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-7754.0	NM_025549	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-69223423-4	chr10	69222978	69223978	+	964.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252638, intron 2 of 11)	intron (NM_001252638, intron 2 of 11)	10284.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-19926740-4	chr11	19926250	19927250	+	964.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	2308.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	17.0	41.0	33.0	47.0	79.5	47.5
Merged-chr9-89179584-4	chr9	89179082	89180082	+	964.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19691.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	0.0	0.0	3.0	0.0	0.0	1.0
Merged-chr5-62765904-4	chr5	62765395	62766395	+	964.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178407, exon 1 of 33)	5' UTR (NM_178407, exon 1 of 33)	282.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81208227-4	chr13	81207707	81208707	+	964.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 85 of 89)	intron (NM_054053, intron 85 of 89)	244133.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24745739-4	chr17	24745235	24746235	+	964.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7253.0	NM_001357342	328779.0	Mm.328848	NM_001012402	ENSMUSG00000039628	Hs3st6	3-OST-6	heparan sulfate (glucosamine) 3-O-sulfotransferase 6	protein-coding	0.0	0.0	4.0	6.5	5.0	0.5
Merged-chr5-115977869-4	chr5	115977364	115978364	+	964.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007708, intron 27 of 46)	ORR1D2|LTR|ERVL-MaLR	46564.0	NM_031869	19079.0	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	15.0	11.5	15.0	13.0	16.5	13.5
Merged-chr18-39635845-4	chr18	39635295	39636295	+	964.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137702.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40501658-4	chr9	40501165	40502165	+	964.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 1 of 20)	intron (NM_001357617, intron 1 of 20)	29718.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	1.5	6.5	7.5	4.0	27.0	11.5
Merged-chr12-85477471-4	chr12	85476950	85477950	+	964.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010234)	TTS (NM_010234)	3560.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120818231-4	chr8	120817708	120818708	+	964.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79569.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35623199-3	chr2	35622703	35623703	+	964.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290641, intron 1 of 15)	intron (NM_001290641, intron 1 of 15)	1222.0	NM_001114124	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54092398-3	chr11	54091893	54092893	+	964.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8531.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3353548-4	chr8	3353046	3354046	+	964.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033378, exon 1 of 11)	5' UTR (NM_001033378, exon 1 of 11)	131.0	NM_001033378	319493.0	Mm.234565	NM_001033378	ENSMUSG00000074497	A430078G23Rik	-	RIKEN cDNA A430078G23 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134779529-6	chr4	134779020	134780020	+	964.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11516.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-127330344-3	chr8	127329823	127330823	+	964.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013580, intron 3 of 13)	intron (NM_001013580, intron 3 of 13)	30671.0	NM_001013580	93742.0	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64093501-3	chr5	64093037	64094037	+	964.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025700, intron 1 of 13)	intron (NM_025700, intron 1 of 13)	598.0	NM_001356964	66681.0	Mm.2325	NM_025700	ENSMUSG00000029171	Pgm1	3230402E02Rik|Pgm-1|Pgm2	phosphoglucomutase 1	protein-coding	5.0	12.5	4.0	5.0	12.0	4.0
Merged-chr11-89006609-4	chr11	89006131	89007131	+	964.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009546, intron 2 of 8)	MLT1J|LTR|ERVL-MaLR	7228.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	26.0	29.0	38.0	7.0	25.0	24.0
Merged-chr9-99458849-2	chr9	99458349	99459349	+	964.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001165957, intron 1 of 9)	intron (NM_001165957, intron 1 of 9)	2606.0	NM_001165957	623534.0	Mm.484967	NM_001165957		Nme9	Txndc6	NME/NM23 family member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152475840-2	chr3	152475340	152476340	+	964.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081277, intron 12 of 13)	intron (NM_001081277, intron 12 of 13)	79156.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4493040-4	chr7	4492564	4493564	+	964.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029834, intron 3 of 21)	intron (NM_029834, intron 3 of 21)	8616.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-45858232-4	chr1	45857713	45858713	+	964.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63047.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113750282-4	chr6	113749846	113750846	+	964.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001036684, intron 19 of 19)	intron (NM_001036684, intron 19 of 19)	-9665.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84191069-4	chr17	84190529	84191529	+	964.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_183021, exon 38 of 38)	3' UTR (NM_183021, exon 38 of 38)	-3082.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24692594-4	chr17	24692085	24693085	+	964.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023040)	TTS (NM_023040)	-2636.0	NM_011522	20974.0	Mm.26032	NM_011522	ENSMUSG00000007021	Syngr3	-	synaptogyrin 3	protein-coding	10.0	30.0	25.5	6.5	22.5	8.5
Merged-chr5-118633257-4	chr5	118632762	118633762	+	964.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	72543.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.5	9.0	7.0	2.5	11.5	8.0
Merged-chr4-155708742-4	chr4	155708234	155709234	+	964.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026899, intron 1 of 4)	B2_Mm2|SINE|B2	3919.0	NM_026899	68991.0	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21006899-4	chr11	21006394	21007394	+	964.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84430.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	12.5	21.0	14.0	11.0	26.5	11.5
Merged-chr5-38509014-4	chr5	38508521	38509521	+	964.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-6869.0	NM_145559	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-30600853-4	chr3	30600380	30601380	+	964.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1010.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31025717-4	chr2	31025213	31026213	+	964.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177649)	TTS (NM_001177649)	43434.0	NM_028846	74270.0	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70991954-4	chr12	70991468	70992468	+	964.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045055, exon 4 of 4)	non-coding (NR_045055, exon 4 of 4)	17345.0	NM_011184	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	0.0	13.0	4.5	1.0	13.0	6.5
Merged-chr12-8432968-5	chr12	8432382	8433382	+	964.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67127.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	9.0	6.0	4.5	6.5	4.5	5.0
Merged-chr8-105606706-4	chr8	105606193	105607193	+	964.589294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081241, intron 1 of 21)	intron (NM_001081241, intron 1 of 21)	1464.0	NM_001081241	75687.0	Mm.41261	NM_001081241	ENSMUSG00000038604	Ripor1	2310066E14Rik|AI837433|Fam65a	RHO family interacting cell polarization regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-74908486-4	chr14	74908001	74909001	+	964.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	39376.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86213363-6	chr15	86212816	86213816	+	964.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1143.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-52750049-7	chr18	52749569	52750569	+	964.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17742.0	NM_026408	67847.0	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119976790-5	chr4	119976341	119977341	+	964.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	(TC)n|Simple_repeat|Simple_repeat	162163.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	17.0	23.0	6.5	9.5	18.0	20.0
Merged-chr4-150030789-4	chr4	150030204	150031204	+	964.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21681.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	1.0	5.0	5.0	1.5	7.5	3.0
Merged-chr12-111915008-4	chr12	111914510	111915510	+	964.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6955.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143061240-3	chr5	143060741	143061741	+	964.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	51779.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103009445-3	chr2	103008941	103009941	+	964.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER63C|DNA|hAT-Blackjack	64072.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	58.5	113.0	54.5	39.5	109.5	82.0
Merged-chr13-43478717-3	chr13	43478235	43479235	+	964.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019930, intron 1 of 13)	intron (NM_019930, intron 1 of 13)	2238.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43872820-4	chr5	43872319	43873319	+	964.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	MLT1H-int|LTR|ERVL-MaLR	4010.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	83.5	143.5	128.5	44.5	198.0	114.0
Merged-chr13-60722893-4	chr13	60722392	60723392	+	964.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 10 of 26)	intron (NM_134062, intron 10 of 26)	63472.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	15.5	39.0	26.5	44.5	57.5	50.5
Merged-chr7-27508770-4	chr7	27508273	27509273	+	964.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019412, intron 5 of 5)	B3|SINE|B2	9449.0	NM_019412	19153.0	Mm.10119	NM_019412	ENSMUSG00000053198	Prx	L-Periaxin	periaxin	protein-coding	0.0	11.0	4.0	4.0	10.0	1.0
Merged-chr9-90109574-4	chr9	90109088	90110088	+	964.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039147, intron 2 of 12)	intron (NM_001039147, intron 2 of 12)	5232.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	6.0	26.0	21.0	4.0	20.5	19.0
Merged-chr14-25606791-4	chr14	25606291	25607291	+	964.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 6 of 23)	CpG	3278.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	16.0	12.5	3.0	0.5	10.5	5.0
Merged-chr17-33033299-4	chr17	33032775	33033775	+	964.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028543, intron 1 of 3)	intron (NM_028543, intron 1 of 3)	106.0	NM_028543	73451.0	Mm.129453	NM_028543	ENSMUSG00000067430	Zfp763	1700065O13Rik|AI839635	zinc finger protein 763	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8997077-2	chr3	8996594	8997594	+	964.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	L1_Mus1|LINE|L1	7110.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121176403-2	chr11	121175887	121176887	+	964.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16116.0	NM_145440	217369.0	Mm.20122	NM_145440	ENSMUSG00000039321	Uts2r	Gpr14|UR-2-R|UTR|UTR2	urotensin 2 receptor	protein-coding	1.0	1.5	2.5	3.5	0.0	0.0
Merged-chr15-81687693-2	chr15	81687193	81688193	+	964.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_110362, exon 17 of 17)	non-coding (NR_110362, exon 17 of 17)	9594.0	NM_001164320	214685.0	Mm.393287	NM_001164320	ENSMUSG00000063765	Chadl	AY100452|D930017K21Rik	chondroadherin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44110169-2	chr9	44109669	44110669	+	964.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001190314)	TTS (NM_001190314)	2860.0	NM_001190319	235312.0	Mm.227110	NM_145613	ENSMUSG00000079592	C1qtnf5	Ctrp5	C1q and tumor necrosis factor related protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75166975-2	chr11	75166476	75167476	+	964.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001098203, exon 2 of 2)	exon (NM_001098203, exon 2 of 2)	1176.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0.0	0.0	0.0	1.5	2.5	0.0
Merged-chr2-31715908-4	chr2	31715386	31716386	+	964.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283047, intron 2 of 11)	intron (NM_001283047, intron 2 of 11)	27349.0	NM_001283046	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44768022-2	chr13	44767522	44768522	+	964.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205043, intron 1 of 17)	B4A|SINE|B4	36751.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70618687-2	chr11	70618187	70619187	+	964.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009603, intron 2 of 11)	intron (NM_009603, intron 2 of 11)	507.0	NM_009603	11448.0	Mm.4980	NM_009603	ENSMUSG00000014609	Chrne	AChrepsilon|Acre|nAChRE	cholinergic receptor, nicotinic, epsilon polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184542504-4	chr1	184541995	184542995	+	964.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040472, intron 2 of 5)	intron (NR_040472, intron 2 of 5)	15196.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95709807-2	chr16	95709307	95710307	+	964.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011809, exon 3 of 10)	exon (NM_011809, exon 3 of 10)	7400.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20349121-4	chr10	20348612	20349612	+	964.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027930, intron 2 of 6)	MTC|LTR|ERVL-MaLR	1293.0	NM_027930	71804.0	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	35.5	42.5	42.0	15.0	22.0	16.5
Merged-chr10-81316289-2	chr10	81315789	81316789	+	964.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293646, intron 17 of 18)	intron (NM_001293646, intron 17 of 18)	-4814.0	NM_027381	70312.0	Mm.87628	NM_027381	ENSMUSG00000034889	Cactin	2510012J08Rik	cactin, spliceosome C complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37693038-2	chr19	37692538	37693538	+	964.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001105201, exon 6 of 6)	exon (NM_001105201, exon 6 of 6)	-4770.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	7.5	0.0	0.5	1.5	13.0	2.0
Merged-chr7-114194991-4	chr7	114194503	114195503	+	964.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	59677.0	NM_033370	70349.0	Mm.277024	NM_033370	ENSMUSG00000030754	Copb1	2610019B04Rik	coatomer protein complex, subunit beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97083737-2	chr7	97083237	97084237	+	964.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	ID_B1|SINE|B4	1986.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	19.0	28.5	32.5	12.0	9.5	10.5
Merged-chr1-195018358-3	chr1	195017847	195018847	+	964.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015566, intron 1 of 7)	intron (NR_015566, intron 1 of 7)	948.0	NR_015566	320977.0	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44987519-2	chr7	44987019	44988019	+	964.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045266, intron 1 of 1)	RSINE1|SINE|B4	619.0	NR_045266	100502630.0	Mm.490013	NR_045266	ENSMUSG00000087138	Gm15545	-	predicted gene 15545	ncRNA	40.0	115.5	83.0	38.0	130.5	81.0
Merged-chr1-92682068-2	chr1	92681568	92682568	+	964.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33227.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-6411097-2	chr9	6410597	6411597	+	964.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-144550.0	NM_027942	71829.0	Mm.141452	NM_027942	ENSMUSG00000047619	Ddi1	1700011N24Rik	DNA-damage inducible 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97400133-2	chr6	97399633	97400633	+	964.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	59153.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37535232-4	chr19	37534743	37535743	+	964.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15175.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	4.0	5.0	2.5	0.5	9.0	2.5
Merged-chr17-64747147-2	chr17	64746647	64747647	+	964.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 20 of 21)	intron (NM_008549, intron 20 of 21)	-19964.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26201031-2	chr17	26200563	26201563	+	964.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008113, intron 1 of 5)	CpG	287.0	NM_008113	14570.0	Mm.1383	NM_008113	ENSMUSG00000073433	Arhgdig	Gdi5|RIP2|Rho-GDI-3|Rho-GDI2	Rho GDP dissociation inhibitor (GDI) gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35922552-4	chr16	35922074	35923074	+	964.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	-15896.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43528460-2	chr19	43527960	43528960	+	964.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3855.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	0.0	4.0	0.0	0.0	5.0	0.0
Merged-chr3-135580620-2	chr3	135580120	135581120	+	964.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95009.0	NM_027288	110173.0	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	2.0	0.0	1.5	3.5	0.0	1.5
Merged-chr11-82819534-2	chr11	82819034	82820034	+	964.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001007465, intron 1 of 6)	B3A|SINE|B2	9509.0	NM_026097	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86147882-2	chr12	86147382	86148382	+	964.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029601, intron 4 of 7)	B4A|SINE|B4	-21459.0	NR_046081	328136.0	Mm.312050	NR_046081	ENSMUSG00000097543	Gm805	-	predicted gene 805	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87697626-2	chr16	87697126	87698126	+	964.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1328.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167720237-2	chr2	167719737	167720737	+	964.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29060.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29766301-1	chr6	29765801	29766801	+	964.5	f1_balb.idr	Intergenic	B2_Mm1a|SINE|B2	-2142.0	NM_021414	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	4.0	8.0	1.0	5.0	4.5	4.0
Merged-chr15-41163801-4	chr15	41163290	41164290	+	964.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9911.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-121452218-4	chr2	121451711	121452711	+	964.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_110986, exon 3 of 3)	non-coding (NR_110986, exon 3 of 3)	3013.0	NR_110986	378702.0	Mm.262252	NM_011354	ENSMUSG00000074884	Serf2	C80083|Msmac1l|m4F5rel	small EDRK-rich factor 2	protein-coding	9.0	31.5	29.0	6.0	39.5	28.5
Merged-chr13-60728644-2	chr13	60728144	60729144	+	964.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 15 of 26)	intron (NM_134062, intron 15 of 26)	57720.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-101045934-4	chr9	101045431	101046431	+	964.462524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16B2|LTR|ERVL	-11047.0	NM_025835	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-133526513-4	chr3	133526017	133527017	+	964.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040400, intron 1 of 10)	L1MCa|LINE|L1	17873.0	NM_001040400	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75055890-3	chr10	75055395	75056395	+	964.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5001.0	NM_001081412	110279.0	Mm.333722	NM_001081412	ENSMUSG00000009681	Bcr	5133400C09Rik|AI561783|AI853148|mKIAA3017	breakpoint cluster region	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-118459273-3	chr5	118458808	118459808	+	964.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C2|LTR|ERVK	-101411.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49755433-3	chr11	49754933	49755933	+	964.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38722.0	NM_013529	14584.0	Mm.24402	NM_013529	ENSMUSG00000020363	Gfpt2	AI480523|GFAT2	glutamine fructose-6-phosphate transaminase 2	protein-coding	0.0	1.0	2.5	1.0	7.5	3.5
Merged-chr4-141637737-3	chr4	141637273	141638273	+	964.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033150, intron 6 of 19)	intron (NM_001033150, intron 6 of 19)	-13939.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	12.0	24.0	9.5	19.0	34.5	23.5
Merged-chr16-14378812-4	chr16	14378288	14379288	+	964.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008576, intron 1 of 30)	intron (NM_008576, intron 1 of 30)	17230.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	10.0	10.5	5.5	1.5	6.5	1.0
Merged-chr12-98677613-4	chr12	98677106	98678106	+	964.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011877, exon 19 of 19)	3' UTR (NM_011877, exon 19 of 19)	49464.0	NM_001289574	104871.0	Mm.210053	NM_178914	ENSMUSG00000021007	Spata7	AI661438|B230306G18Rik|HSD3	spermatogenesis associated 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43546196-4	chr7	43545696	43546696	+	964.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13025.0	NM_021293	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13555834-4	chr9	13555310	13556310	+	964.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64179.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0.0	0.0	3.0	0.0	2.0	1.5
Merged-chr18-46601509-3	chr18	46601006	46602006	+	964.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010120, intron 2 of 2)	intron (NM_010120, intron 2 of 2)	3802.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46772738-4	chr17	46772204	46773204	+	964.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025966)	promoter-TSS (NM_025966)	69.0	NM_025966	67101.0	Mm.358702	NM_025966	ENSMUSG00000062619	2310039H08Rik	-	RIKEN cDNA 2310039H08 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-45410284-4	chr8	45409782	45410782	+	964.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357316)	promoter-TSS (NM_001357316)	98.0	NM_001357316	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59003443-4	chr13	59002949	59003949	+	964.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	195752.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	98.5	212.0	158.5	98.5	215.0	148.5
Merged-chr2-112197060-4	chr2	112196564	112197564	+	964.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	41166.0	NM_001011802	258022.0	Mm.377330	NM_001011802	ENSMUSG00000049758	Olfr1318	MOR245-16	olfactory receptor 1318	protein-coding	0.0	1.5	2.0	9.5	6.0	3.5
Merged-chr14-106669513-4	chr14	106669013	106670013	+	964.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-182993.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	20.5	13.5	25.0	17.5	15.0	33.5
Merged-chr11-31734305-4	chr11	31733775	31734775	+	964.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62413.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	7.0	2.0	12.0	0.0	2.0	5.0
Merged-chr3-22091945-4	chr3	22091451	22092451	+	964.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	RLTR23|LTR|ERV1	15299.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158258158-4	chr2	158257667	158258667	+	964.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177850)	promoter-TSS (NM_177850)	-74.0	NM_177850	329547.0	Mm.260883	NM_177850	ENSMUSG00000052922	Bpi	9230105K17Rik|Bpifd1	bactericidal permeablility increasing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-122138864-4	chr9	122138353	122139353	+	964.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357775, intron 4 of 7)	L1M5|LINE|L1	21394.0	NM_001357776	20623.0	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45075042-4	chr14	45074556	45075556	+	964.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86945.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-86862451-7	chr8	86861959	86862959	+	964.371399	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	22799.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	13.5	66.5	35.0	18.0	64.0	34.0
Merged-chr1-131937866-4	chr1	131937388	131938388	+	964.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25027.0	NM_001177628	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36031954-4	chr17	36031446	36032446	+	964.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010398, intron 2 of 6)	intron (NM_010398, intron 2 of 6)	755.0	NM_010398	15040.0	Mm.439648	NM_010398	ENSMUSG00000067212	H2-T23	37b|37c|H-2T23|H2-Qa1|Qa-1|Qa-1(b)|Qa1|Qed-1|T18c|T18c(37)|T23b|T23d	histocompatibility 2, T region locus 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26571106-4	chr17	26570616	26571616	+	964.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	9604.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	3.0	1.5	2.0	0.0	0.0	0.0
Merged-chr11-82100417-4	chr11	82099922	82100922	+	964.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1423.0	NM_011331	20293.0	Mm.867	NM_011331	ENSMUSG00000035352	Ccl12	MCP-5|Scya12	chemokine (C-C motif) ligand 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-24938812-3	chr8	24938316	24939316	+	964.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153397, intron 1 of 21)	MTD|LTR|ERVL-MaLR	9988.0	NM_001293693	353188.0	Mm.269223	NM_153397	ENSMUSG00000037437	Adam32	-	a disintegrin and metallopeptidase domain 32	protein-coding	1.0	3.0	0.0	0.0	2.5	0.0
Merged-chr2-164389755-4	chr2	164389251	164390251	+	964.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252563, intron 10 of 10)	CpG	-13443.0	NM_009036	19668.0	Mm.473794	NM_009036	ENSMUSG00000017007	Rbpjl	RBP-L|Rbpsuhl	recombination signal binding protein for immunoglobulin kappa J region-like	protein-coding	1.0	0.0	2.5	0.0	1.0	2.0
Merged-chr10-14085997-4	chr10	14085470	14086470	+	964.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010437, intron 2 of 8)	intron (NM_010437, intron 2 of 8)	119591.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	29.0	53.5	22.0	22.5	36.5	26.5
Merged-chr16-30388168-3	chr16	30387585	30388585	+	964.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128096, intron 1 of 33)	CpG	445.0	NM_001128094	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	41.0	69.5	25.5	19.0	25.5	25.5
Merged-chr6-70804801-4	chr6	70804283	70805283	+	964.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12608.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100254797-3	chr7	100254308	100255308	+	964.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027629, intron 4 of 13)	intron (NM_027629, intron 4 of 13)	-9736.0	NR_033563	14777.0	Mm.57225	NR_033563		Gpx2-ps1	AU041318	glutathione peroxidase 2, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27656942-4	chr3	27656441	27657441	+	964.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173182, intron 1 of 25)	intron (NM_173182, intron 1 of 25)	53511.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-57762703-3	chr19	57762201	57763201	+	964.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181415, intron 24 of 28)	intron (NM_181415, intron 24 of 28)	151667.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	2.0	3.0	6.0	4.5	9.5	2.5
Merged-chr2-152709274-4	chr2	152708775	152709775	+	964.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001159551)	TTS (NM_001159551)	22127.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	34.5	88.5	48.0	10.5	38.5	13.0
Merged-chr8-26907698-4	chr8	26907141	26908141	+	964.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69695.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-81927978-3	chr12	81927462	81928462	+	964.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018814, intron 6 of 35)	intron (NM_018814, intron 6 of 35)	67932.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-10962568-4	chr4	10962072	10963072	+	964.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45047.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	13.5	15.5	22.5	13.0	32.5	12.0
Merged-chr10-96342694-4	chr10	96342188	96343188	+	964.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116481.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31077019-3	chr2	31076526	31077526	+	964.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	MTD|LTR|ERVL-MaLR	19474.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130549311-4	chr4	130548819	130549819	+	964.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025998, intron 1 of 6)	(A)n|Simple_repeat|Simple_repeat	24717.0	NM_025998	67149.0	Mm.423029	NM_025998	ENSMUSG00000078532	Nkain1	2610200G18Rik|2810426C15Rik	Na+/K+ transporting ATPase interacting 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97357792-3	chr11	97357289	97358289	+	964.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4762.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	10.5	0.5	0.5	0.0	0.0	0.0
Merged-chr10-19693052-8	chr10	19692506	19693506	+	964.3312380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19581.0	NM_172786	237313.0	Mm.234667	NM_172786	ENSMUSG00000020007	Il20ra	E230031K19	interleukin 20 receptor, alpha	protein-coding	2.0	10.5	20.5	4.5	13.5	20.0
Merged-chr4-19576610-4	chr4	19576144	19577144	+	964.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025476, intron 1 of 9)	intron (NM_025476, intron 1 of 9)	1578.0	NM_025476	66302.0	Mm.440686	NM_025476	ENSMUSG00000028229	Rmdn1	Fam82b|RMD-1	regulator of microtubule dynamics 1	protein-coding	39.0	55.0	20.5	16.0	38.0	30.5
Merged-chr12-35641132-4	chr12	35640620	35641620	+	964.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	45184.0	NR_045051	71581.0	Mm.100110	NR_045050	ENSMUSG00000113985	9130015A21Rik	100043575|Gm4527	RIKEN cDNA 9130015A21 gene	ncRNA	9.0	3.0	2.0	11.0	16.5	1.5
Merged-chr4-66843468-4	chr4	66842982	66843982	+	964.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021297, exon 3 of 3)	3' UTR (NM_021297, exon 3 of 3)	15931.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	8.0	10.0	17.0	23.5	20.0	16.5
Merged-chr2-91140506-2	chr2	91140006	91141006	+	964.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177719, intron 33 of 34)	intron (NM_001177719, intron 33 of 34)	22362.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127577712-2	chr10	127577212	127578212	+	964.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 22 of 88)	intron (NM_008512, intron 22 of 88)	-43153.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58231950-4	chr9	58231468	58232468	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178087, intron 4 of 8)	intron (NM_178087, intron 4 of 8)	10818.0	NR_105806	102466639.0		NR_105806	ENSMUSG00000098886	Mir6385	Gm28021|mmu-mir-6385	microRNA 6385	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117181819-4	chr5	117181357	117182357	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	48269.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31181835-4	chr14	31181339	31182339	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022656, intron 13 of 20)	intron (NM_022656, intron 13 of 20)	-13198.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99511923-4	chr12	99511422	99512422	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51919.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86678660-2	chr12	86678160	86679160	+	964.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177354)	promoter-TSS (NM_177354)	-40.0	NM_177354	238328.0	Mm.216101	NM_177354	ENSMUSG00000021256	Vash1	AI834978|D930046M13Rik|G630009D10Rik	vasohibin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120954156-4	chr6	120953658	120954658	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270475, intron 27 of 31)	intron (NM_001270475, intron 27 of 31)	-4686.0	NR_138099	215458.0	Mm.122399	NR_138099		LOC215458	-	uncharacterized LOC215458	ncRNA	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr6-124737192-4	chr6	124736700	124737700	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077705, intron 1 of 15)	MIRb|SINE|MIR	1509.0	NM_001077705	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	27.5	39.5	45.0	6.0	50.5	29.0
Merged-chr18-4239669-4	chr18	4239166	4240166	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73834.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70158727-4	chr8	70158232	70159232	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045484, intron 1 of 8)	CpG	5971.0	NM_001045484	17259.0	Mm.432505	NM_008578	ENSMUSG00000079033	Mef2b	AI451606	myocyte enhancer factor 2B	protein-coding	3.0	1.5	14.5	8.0	0.0	1.0
Merged-chr6-72261472-4	chr6	72260974	72261974	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25897.0	NM_153778	71093.0	Mm.87449	NM_153778	ENSMUSG00000037621	Atoh8	4933425C05Rik|Hath6|Math6|bHLHa21|okadin	atonal bHLH transcription factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134117179-4	chr4	134116658	134117658	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026257, intron 8 of 14)	intron (NM_026257, intron 8 of 14)	11595.0	NM_080559	73723.0	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	29.0	47.0	41.0	8.5	11.5	7.0
Merged-chr11-118312477-4	chr11	118312000	118313000	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011594, intron 3 of 4)	intron (NM_011594, intron 3 of 4)	-22256.0	NM_001033528	72344.0	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122550370-4	chr8	122549876	122550876	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037298, intron 1 of 50)	intron (NM_001037298, intron 1 of 50)	953.0	NM_001037298	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	10.0	32.0	23.0	14.0	38.0	17.5
Merged-chr4-15234778-4	chr4	15234266	15235266	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16|LTR|ERVK	-31054.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-82629277-4	chr10	82628766	82629766	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011561)	promoter-TSS (NM_011561)	-572.0	NM_001358517	21665.0	Mm.284252	NM_011561	ENSMUSG00000034674	Tdg	E130317C12Rik|JZA-3|Jza1	thymine DNA glycosylase	protein-coding	63.5	195.5	98.5	51.5	103.0	73.5
Merged-chr18-32834192-3	chr18	32833681	32834681	+	964.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045381, intron 1 of 4)	intron (NR_045381, intron 1 of 4)	-3044.0	NM_001110016	225348.0	Mm.38816	NM_144863	ENSMUSG00000038299	Wdr36	5730444A13Rik|Ta-wdrp	WD repeat domain 36	protein-coding	16.5	13.5	7.5	24.0	38.0	9.0
Merged-chr6-108277116-3	chr6	108276590	108277590	+	964.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 4 of 61)	intron (NM_010585, intron 4 of 61)	63994.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	0.0	1.0	0.5	0.0	0.5	2.5
Merged-chr2-163580352-3	chr2	163579846	163580846	+	964.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21968.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68446043-3	chr10	68445543	68446543	+	964.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028491, intron 5 of 7)	intron (NM_028491, intron 5 of 7)	95832.0	NM_028491	73287.0	Mm.141830	NM_028491	ENSMUSG00000019945	Cabcoco1	1700040L02Rik	ciliary associated calcium binding coiled-coil 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-42103801-4	chr13	42103321	42104321	+	964.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	51800.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132178800-4	chr4	132178304	132179304	+	964.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33452.0	NM_145393	213541.0	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH domain family 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69657806-4	chr3	69657300	69658300	+	964.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58840.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	2.5	21.5	14.0	9.5	28.5	13.0
Merged-chr2-35506833-4	chr2	35506330	35507330	+	964.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45381.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-52100657-4	chr1	52100163	52101163	+	964.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308266, intron 18 of 24)	intron (NM_001308266, intron 18 of 24)	-18775.0	NM_001357627	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-142748464-4	chr6	142747960	142748960	+	964.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TGGGGG)n|Simple_repeat|Simple_repeat	-8226.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-49031446-4	chr6	49030955	49031955	+	964.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5063.0	NM_053110	93695.0	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-133755129-3	chr3	133754619	133755619	+	964.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-210729.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90140454-4	chr7	90139944	90140944	+	964.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	10231.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	19.0	23.0	35.5	17.5	32.5	39.0
Merged-chr3-136703076-4	chr3	136702577	136703577	+	964.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	33011.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	1.5	4.0	1.5	1.5	4.5	1.5
Merged-chr18-35058542-3	chr18	35058042	35059042	+	964.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60370.0	NM_009818	12385.0	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	0.0	0.0	1.0	0.0	0.0	0.5
Merged-chr11-98795823-4	chr11	98795319	98796319	+	964.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001361932, exon 1 of 3)	5' UTR (NM_001361932, exon 1 of 3)	303.0	NM_028722	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35498480-4	chr8	35497972	35498972	+	964.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-2939.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	0.5	2.5	0.0	4.0	6.0	2.0
Merged-chr5-134607322-4	chr5	134606814	134607814	+	964.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020044, intron 3 of 12)	intron (NM_020044, intron 3 of 12)	7711.0	NM_022964	56743.0	Mm.391375	NM_020044	ENSMUSG00000040751	Lat2	AW125574|LAB|NTAL|WSCR5|Wbscr15|Wbscr5	linker for activation of T cells family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101268728-2	chr15	101268184	101269184	+	964.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010444, intron 1 of 6)	intron (NM_010444, intron 1 of 6)	1838.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	2.0	6.0	0.0	0.5	1.0	0.0
Merged-chr4-148083701-2	chr4	148083201	148084201	+	964.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009642, intron 2 of 4)	intron (NM_009642, intron 2 of 4)	4363.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-8839355-4	chr13	8838822	8839822	+	964.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039388, intron 9 of 13)	intron (NM_001039388, intron 9 of 13)	31722.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94502308-4	chr16	94501808	94502808	+	964.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 5 of 7)	intron (NM_007834, intron 5 of 7)	24321.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123926295-4	chr9	123925799	123926799	+	964.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42393.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8924512-4	chr12	8924019	8925019	+	964.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008640, intron 1 of 6)	intron (NM_008640, intron 1 of 6)	3212.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142284812-4	chr7	142284314	142285314	+	964.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_1-I_MM-int|LTR|ERVK	-10451.0	NM_001199309	100043627.0	Mm.388589	NM_001199309	ENSMUSG00000056885	Gm4559	-	predicted gene 4559	protein-coding	0.0	19.0	5.0	5.5	2.5	4.0
Merged-chr10-24636142-4	chr10	24635644	24636644	+	964.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40702.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89643189-2	chr6	89642689	89643689	+	964.125	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001178058)	promoter-TSS (NM_001178058)	-799.0	NM_001178060	232223.0	Mm.229332	NM_153162	ENSMUSG00000000811	Txnrd3	AI196535|TGR|TR2	thioredoxin reductase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40762478-4	chr9	40761940	40762940	+	964.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 2 of 6)	B1_Mus1|SINE|Alu	-38833.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	29.5	62.5	41.5	47.5	165.0	82.0
Merged-chr10-19522378-3	chr10	19521877	19522877	+	964.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27734.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-12455311-3	chr5	12454803	12455803	+	964.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028882, intron 2 of 17)	intron (NM_028882, intron 2 of 17)	72137.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-55431102-3	chr6	55430614	55431614	+	964.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-20864.0	NM_001025372	11517.0	Mm.44245	NM_007407	ENSMUSG00000029778	Adcyap1r1	2900024I10Rik|AI846590|PAC1|PAC1R|PACAP1-R	adenylate cyclase activating polypeptide 1 receptor 1	protein-coding	0.0	6.0	0.0	0.0	2.0	9.5
Merged-chr4-106328908-4	chr4	106328410	106329410	+	964.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183225, intron 1 of 67)	MTEb|LTR|ERVL-MaLR	12697.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155488921-4	chr4	155488428	155489428	+	964.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2433.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-22402271-3	chr4	22401808	22402808	+	964.0833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172988, intron 5 of 8)	ORR1B1|LTR|ERVL-MaLR	44765.0	NR_104380	269514.0	Mm.40708	NM_172988	ENSMUSG00000040410	Fbxl4	AI836810|FBL4|FBL5	F-box and leucine-rich repeat protein 4	protein-coding	7.0	0.0	3.5	7.0	10.0	0.5
Merged-chr11-5734570-4	chr11	5734058	5735058	+	964.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361588, intron 1 of 6)	intron (NM_001361588, intron 1 of 6)	6618.0	NM_001361590	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	23.5	59.0	25.0	18.5	38.5	40.0
Merged-chr5-134458871-4	chr5	134458378	134459378	+	964.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2162.0	NM_001081464	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76562330-4	chr11	76561810	76562810	+	964.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198894, intron 1 of 22)	intron (NM_198894, intron 1 of 22)	9074.0	NM_198895	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	5.0	0.5	2.0	0.0	0.0	0.5
Merged-chr10-26374239-4	chr10	26373807	26374807	+	964.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347467)	promoter-TSS (NM_001347467)	-235.0	NM_001359254	237339.0	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	L3MBTL3 histone methyl-lysine binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-143975452-4	chr2	143974978	143975978	+	964.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024281, intron 2 of 23)	intron (NM_024281, intron 2 of 23)	35785.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40974233-4	chr9	40973735	40974735	+	964.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019465, intron 9 of 9)	MTEa|LTR|ERVL-MaLR	-9682.0	NM_001357359	70989.0	Mm.335087	NM_001081121	ENSMUSG00000032023	Jhy	4931429I11Rik|BB239335	junctional cadherin complex regulator	protein-coding	0.0	2.5	0.0	4.5	0.0	0.5
Merged-chr8-26896079-3	chr8	26895581	26896581	+	964.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-71658.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13314145-3	chr9	13313641	13314641	+	964.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	67185.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	13.0	6.5	20.0	12.0	31.5	16.0
Merged-chr7-35167162-4	chr7	35166667	35167667	+	964.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-19218.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	15.5	9.0	3.0	1.0	14.0	6.0
Merged-chr7-130968688-4	chr7	130968193	130969193	+	964.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019564, intron 3 of 8)	intron (NM_019564, intron 3 of 8)	32490.0	NM_019564	56213.0	Mm.30156	NM_019564	ENSMUSG00000006205	Htra1	AI429470|HTRA|L56|Prss11|RSPP11	HtrA serine peptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11465067-4	chr19	11464618	11465618	+	964.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4250.0	NM_001166376	73656.0	Mm.440719	NM_028595	ENSMUSG00000079419	Ms4a6c	2200009H22Rik|2210417N07Rik	membrane-spanning 4-domains, subfamily A, member 6C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54376108-4	chr14	54375600	54376600	+	964.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 6 of 11)	intron (NM_011405, intron 6 of 11)	15259.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	9.0	8.5	17.5	6.5	31.5	39.5
Merged-chr10-34167182-4	chr10	34166691	34167691	+	964.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 2 of 5)	MLT1C|LTR|ERVL-MaLR	-39219.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-25805128-4	chr16	25804634	25805634	+	964.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127262, intron 1 of 10)	intron (NM_001127262, intron 1 of 10)	3218.0	NM_001127264	22061.0	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-109845107-4	chr5	109844589	109845589	+	964.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10947.0	NR_027964	667213.0	Mm.454429	NR_027964	ENSMUSG00000105044	Gm10416	EG667213	zinc finger protein pseudogene	pseudo	1.5	11.5	8.0	4.5	0.5	8.0
Merged-chr2-75590347-4	chr2	75589841	75590841	+	964.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68918.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116031844-2	chr11	116031344	116032344	+	964.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286006, intron 1 of 15)	intron (NM_001286006, intron 1 of 15)	1528.0	NM_172569	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152602036-2	chr1	152601536	152602536	+	964.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	23181.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74432369-2	chr17	74431869	74432869	+	964.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 8 of 8)	B3|SINE|B2	26739.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85332972-1	chr1	85332472	85333472	+	964.0	f1_balb.idr	Intergenic	Intergenic	-62406.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134918610-4	chr4	134918126	134919126	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-3710.0	NM_027935	71817.0	Mm.88349	NM_027935	ENSMUSG00000028822	Tmem50a	3200001F09Rik|CAM|Smp1	transmembrane protein 50A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-89486102-4	chr4	89485610	89486610	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132431, intron 7 of 9)	intron (NR_132431, intron 7 of 9)	-175078.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	2.0	2.0	0.0	0.0	1.0	2.0
Merged-chr4-107139990-2	chr4	107139490	107140490	+	964.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025617, intron 4 of 4)	intron (NM_025617, intron 4 of 4)	38376.0	NM_025617	66526.0	Mm.246956	NM_025617	ENSMUSG00000028619	Tceanc2	2210010B22Rik|2210012G02Rik|6330404A07Rik|AU015593|Tdeanc2	transcription elongation factor A (SII) N-terminal and central domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99226510-2	chr15	99226010	99227010	+	964.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010601, exon 2 of 15)	exon (NM_010601, exon 2 of 15)	1534.0	NM_010601	16512.0	Mm.374793	NM_010601	ENSMUSG00000037579	Kcnh3	AU019351|C030044P22Rik|Elk2|Kv12.2|Melk2	potassium voltage-gated channel, subfamily H (eag-related), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55936578-2	chr19	55936078	55937078	+	964.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41257.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-85189797-4	chr17	85189296	85190296	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028576, intron 3 of 10)	intron (NM_028576, intron 3 of 10)	99096.0	NM_028576	73582.0	Mm.260753	NM_028576	ENSMUSG00000071037	Camkmt	1700106N22Rik|AI480743|AV099781|CLNMT|CaM KMT	calmodulin-lysine N-methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90906667-4	chr5	90906140	90907140	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009140)	TTS (NM_009140)	2741.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	1.0	0.0	0.5	0.0	0.0	0.0
Merged-chr6-72395082-4	chr6	72394585	72395585	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4418.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75318427-3	chr10	75317929	75318929	+	964.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331095, intron 1 of 2)	intron (NM_001331095, intron 1 of 2)	829.0	NM_001331095	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-24245160-2	chr18	24244660	24245660	+	964.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361200, intron 3 of 12)	RMER5|LTR|ERV1	39166.0	NM_001160404	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135710467-4	chr7	135709976	135710976	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081117, intron 4 of 13)	intron (NM_001081117, intron 4 of 13)	5903.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62503517-2	chr4	62503017	62504017	+	964.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1317.0	NM_024257	72748.0	Mm.41506	NM_024257	ENSMUSG00000038422	Hdhd3	2810435D12Rik	haloacid dehalogenase-like hydrolase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136116483-2	chr4	136116021	136117021	+	964.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-27301.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	20.5	29.5	32.5	16.5	36.5	43.5
Merged-chr11-118211228-3	chr11	118210736	118211736	+	964.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	1506.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35169320-2	chr17	35168820	35169820	+	964.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4443.0	NM_020027	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	1.5	15.0	4.0	7.0	10.0	6.0
Merged-chr12-84846014-2	chr12	84845514	84846514	+	964.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013589, intron 3 of 34)	Tigger7|DNA|TcMar-Tigger	-29788.0	NR_028577	100303738.0	Mm.479389	NR_028577	ENSMUSG00000092130	D030025P21Rik	-	RIKEN cDNA D030025P21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4166572-2	chr19	4166072	4167072	+	964.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134148, intron 9 of 9)	intron (NM_134148, intron 9 of 9)	-3189.0	NR_153659	58988.0	Mm.271937	NM_021485	ENSMUSG00000024830	Rps6kb2	S6K-beta-2|S6K2	ribosomal protein S6 kinase, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79327484-4	chr15	79326994	79327994	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016915, intron 1 of 15)	intron (NM_016915, intron 1 of 15)	877.0	NM_016915	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	0.0	1.5	0.5	0.0	1.0	1.0
Merged-chr11-74522774-4	chr11	74522311	74523311	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	CpG	67347.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100070404-2	chr5	100069904	100070904	+	964.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7558.0	NR_045993	76003.0	Mm.447060	NR_045993	ENSMUSG00000086259	Tmem150cos	5830403M04Rik	transmembrane protein 150C, opposite strand	ncRNA	0.0	0.5	0.0	0.0	1.5	0.0
Merged-chr17-17515776-2	chr17	17515276	17516276	+	964.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	108713.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	2.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-61772238-3	chr1	61771729	61772729	+	964.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081050, intron 2 of 22)	intron (NM_001081050, intron 2 of 22)	133405.0	NM_001081050	72823.0	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79889588-4	chr10	79889099	79890099	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-1254.0	NM_001329541	11537.0	Mm.4407	NM_013459	ENSMUSG00000061780	Cfd	Adn|DF	complement factor D (adipsin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5953043-2	chr19	5952543	5953543	+	964.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 7 of 17)	intron (NM_001164057, intron 7 of 17)	11163.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	33.0	37.5	22.5	11.0	15.5	11.5
Merged-chr9-120020394-3	chr9	120019886	120020886	+	964.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011724, intron 1 of 2)	intron (NM_011724, intron 1 of 2)	3212.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167060872-4	chr2	167060379	167061379	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033196, intron 1 of 13)	intron (NM_001033196, intron 1 of 13)	-2055.0	NR_138563	68949.0	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76369414-2	chr16	76368914	76369914	+	964.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	3635.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-31174822-1	chr9	31174322	31175322	+	964.0	f0_balb.idr	intron (NM_001357698, intron 3 of 17)	intron (NM_001357698, intron 3 of 17)	37026.0	NM_001357698	11804.0	Mm.19133	NM_009691	ENSMUSG00000031996	Aplp2	AI790698|APLP-2|CDEBP	amyloid beta (A4) precursor-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29032056-3	chr17	29031576	29032576	+	964.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013663)	promoter-TSS (NM_013663)	-584.0	NM_013663	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47139898-3	chr17	47139353	47140353	+	964.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1089.0	NM_001097623	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152038456-7	chr1	152037952	152038952	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 1 of 5)	intron (NM_197990, intron 1 of 5)	51868.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16816812-4	chr7	16816334	16817334	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173430)	promoter-TSS (NM_173430)	-102.0	NM_173430	243853.0	Mm.39703	NM_173430	ENSMUSG00000048920	Fkrp	A830029B19Rik|AI842067|AI847300|LGMD1I|MDC1C	fukutin related protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80181650-2	chr10	80181150	80182150	+	964.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007909, intron 1 of 3)	intron (NM_007909, intron 1 of 3)	2168.0	NM_007909	13637.0	Mm.1478	NM_007909	ENSMUSG00000003070	Efna2	CEK7L|Elf1|Epl6|Eplg6|Lerk6	ephrin A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127312438-4	chr10	127311915	127312915	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001171582)	promoter-TSS (NM_001171582)	-629.0	NM_001171582	216443.0	Mm.28173	NM_001003913	ENSMUSG00000040354	Mars	Metrs|Mtrns	methionine-tRNA synthetase	protein-coding	41.5	190.5	145.0	52.0	195.5	139.5
Merged-chr5-135106849-4	chr5	135106350	135107350	+	963.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152880)	promoter-TSS (NR_152880)	-41.0	NR_152881	58805.0	Mm.34213	NM_021455	ENSMUSG00000005373	Mlxipl	ChREBP|Mlx|WS-bHLH|Wbscr14|bHLHd14	MLX interacting protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4065104-4	chr19	4064609	4065609	+	963.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	-5662.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129625211-4	chr2	129624707	129625707	+	963.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355158, intron 7 of 8)	intron (NM_001355158, intron 7 of 8)	29745.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	18.0	33.5	25.0	5.5	27.0	13.5
Merged-chr10-117866336-4	chr10	117865829	117866829	+	963.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20355.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140110494-4	chr5	140109920	140110920	+	963.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359025, intron 14 of 17)	intron (NM_001359025, intron 14 of 17)	64498.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111071257-4	chr12	111070762	111071762	+	963.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198023, intron 2 of 11)	intron (NM_198023, intron 2 of 11)	31464.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96758034-4	chr15	96757561	96758561	+	963.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58333.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-33320239-4	chr14	33319686	33320686	+	963.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 4 of 10)	CpG	90838.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120424499-3	chr2	120423950	120424950	+	963.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172672, intron 6 of 23)	intron (NM_172672, intron 6 of 23)	-20334.0	NM_001110496	211499.0	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	10.5	25.0	33.0	15.5	7.0	9.0
Merged-chr11-114909162-4	chr11	114908658	114909658	+	963.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19117.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101544104-2	chr11	101543604	101544604	+	963.9166869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_009764, intron 2 of 22)	intron (NM_009764, intron 2 of 22)	7851.0	NM_009764	12189.0	Mm.244975	NM_009764	ENSMUSG00000017146	Brca1	-	breast cancer 1, early onset	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-74935472-4	chr9	74934934	74935934	+	963.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17446.0	NM_001359816	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	3.5	2.0	9.5	3.5	3.0	3.5
Merged-chr19-46979661-6	chr19	46979107	46980107	+	963.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164363, intron 1 of 17)	intron (NM_001164363, intron 1 of 17)	-10040.0	NM_001164365	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	4.0	10.5	8.0	1.0	15.5	1.0
Merged-chr4-6369938-4	chr4	6369436	6370436	+	963.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	4256.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	15.0	69.0	37.5	17.0	68.5	45.0
Merged-chr18-5819106-4	chr18	5818620	5819620	+	963.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	226473.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	2.0	2.5	5.5	3.5	8.5	3.0
Merged-chr5-22917430-3	chr5	22916979	22917979	+	963.9166869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359998, intron 1 of 3)	intron (NM_001359998, intron 1 of 3)	-170595.0	NR_027362	330052.0	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	12.0	25.5	17.5	8.0	0.0	1.0
Merged-chr1-154117606-3	chr1	154117096	154118096	+	963.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83591.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11138457-3	chr8	11137952	11138952	+	963.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-130022.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136919099-4	chr5	136918579	136919579	+	963.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015555)	promoter-TSS (NR_015555)	-67.0	NR_015555	66752.0	Mm.135764	NR_015555	ENSMUSG00000097908	4933404O12Rik	AW494809	RIKEN cDNA 4933404O12 gene	ncRNA	19.0	20.5	18.0	12.0	34.5	15.5
Merged-chr4-9705940-4	chr4	9705441	9706441	+	963.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-36597.0	NM_001290367	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	7.0	2.0	0.0	0.0	4.0	1.0
Merged-chr15-90667050-4	chr15	90666550	90667550	+	963.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033851, intron 1 of 3)	intron (NM_001033851, intron 1 of 3)	12338.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	0.5	22.0	3.5	5.0	31.0	15.5
Merged-chr1-37344661-3	chr1	37344089	37345089	+	963.875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	-24628.0	NM_172971	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-54555253-4	chr9	54554736	54555736	+	963.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019686, intron 1 of 5)	intron (NM_019686, intron 1 of 5)	4843.0	NM_019686	56506.0	Mm.42192	NM_019686	ENSMUSG00000037493	Cib2	2810434I23Rik|AI449053	calcium and integrin binding family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88643022-4	chr1	88642523	88643523	+	963.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59168.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64266812-4	chr15	64266298	64267298	+	963.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	45875.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31135775-4	chr2	31135282	31136282	+	963.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 1 of 15)	intron (NM_001355105, intron 1 of 15)	6226.0	NM_001355106	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46528778-6	chr19	46528225	46529225	+	963.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27077.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	4.5	8.5	10.5	1.0	11.0	12.0
Merged-chr16-23985542-4	chr16	23985050	23986050	+	963.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009744, intron 1 of 9)	intron (NM_009744, intron 1 of 9)	3302.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31949225-3	chr16	31948758	31949758	+	963.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027897)	promoter-TSS (NR_027897)	712.0	NM_026554	68092.0	Mm.290027	NM_026554	ENSMUSG00000022774	Ncbp2	20kDa|5930413E18Rik|AA536802|AI843301|C79367	nuclear cap binding protein subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-78901664-4	chr12	78901149	78902149	+	963.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013738, intron 1 of 8)	intron (NM_013738, intron 1 of 8)	5289.0	NM_013738	27260.0	Mm.103380	NM_013738	ENSMUSG00000021118	Plek2	-	pleckstrin 2	protein-coding	0.0	0.5	0.0	0.0	0.0	1.5
Merged-chr15-55388288-4	chr15	55387794	55388794	+	963.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181277, intron 13 of 47)	intron (NM_181277, intron 13 of 47)	80544.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75255533-4	chr11	75255035	75256035	+	963.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177708, intron 1 of 1)	intron (NM_177708, intron 1 of 1)	61542.0	NM_177708	237847.0	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	19.5	32.5	11.5	8.5	28.0	18.5
Merged-chr9-13443686-4	chr9	13443184	13444184	+	963.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12323.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	0.5	16.5	12.5	0.0	0.0	3.0
Merged-chr16-31294000-4	chr16	31293485	31294485	+	963.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18708.0	NM_025800	66849.0	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|I-2|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	10.5	25.5	25.5	2.0	12.0	6.5
Merged-chr2-163736117-4	chr2	163735614	163736614	+	963.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001272052, intron 2 of 11)	intron (NM_001272052, intron 2 of 11)	14125.0	NM_007398	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	1.0	0.0	4.0	1.0	1.5	5.5
Merged-chr2-168473083-3	chr2	168472629	168473629	+	963.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117236.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	2.5	0.5	20.0	8.5	11.0	12.0
Merged-chr13-43094768-3	chr13	43094267	43095267	+	963.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001302636, exon 7 of 13)	exon (NM_001302636, exon 7 of 13)	-28072.0	NM_001005748	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	2.0	1.0	1.0	5.0	6.5	1.0
Merged-chr14-75060732-4	chr14	75060217	75061217	+	963.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	44690.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136246082-4	chr5	136245574	136246574	+	963.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1134.0	NM_018825	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	15.5	35.5	34.0	14.5	15.0	24.5
Merged-chr1-125474327-4	chr1	125473821	125474821	+	963.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-38594.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141161611-4	chr4	141161109	141162109	+	963.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172518, intron 1 of 9)	intron (NM_172518, intron 1 of 9)	13687.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100860847-4	chr5	100860347	100861347	+	963.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172715, intron 3 of 12)	intron (NM_172715, intron 3 of 12)	14618.0	NM_172715	231510.0	Mm.271911	NM_172715	ENSMUSG00000029314	Gpat3	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|Agpat9|GPAT-3|mGPAT3	glycerol-3-phosphate acyltransferase 3	protein-coding	3.0	3.0	6.5	3.5	0.0	9.5
Merged-chr8-117482478-4	chr8	117481974	117482974	+	963.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-15801.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-9118756-4	chr15	9118272	9119272	+	963.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 7 of 9)	L2|LINE|L2	21682.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-9072212-6	chr15	9071631	9072631	+	963.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040395, intron 1 of 12)	intron (NM_001040395, intron 1 of 12)	871.0	NM_001040395	68646.0	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-3478161-4	chr13	3477671	3478671	+	963.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015522)	promoter-TSS (NR_015522)	-132.0	NR_015522	76937.0	Mm.487240	NR_015522	ENSMUSG00000097709	2810429I04Rik	AI256682	RIKEN cDNA 2810429I04 gene	ncRNA	0.0	2.5	2.0	0.0	0.0	2.0
Merged-chr16-76399873-4	chr16	76399352	76400352	+	963.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26025.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123137806-4	chr5	123137310	123138310	+	963.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4383.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	5.5	25.5	24.5	9.5	14.0	12.5
Merged-chr16-92714985-4	chr16	92714484	92715484	+	963.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-17655.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153981039-3	chr1	153980514	153981514	+	963.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81085.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-89178153-3	chr7	89177650	89178650	+	963.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 6 of 14)	intron (NM_001360746, intron 6 of 14)	160637.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69977678-4	chr12	69977188	69978188	+	963.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022028, intron 2 of 4)	MLT1F1|LTR|ERVL-MaLR	9314.0	NM_022028	64010.0	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	1.5	3.0	0.0	3.5	1.0	1.0
Merged-chr11-95859700-2	chr11	95859176	95860176	+	963.75	f0_balb.idr|f0_c57.idr	intron (NR_045187, intron 1 of 1)	CpG	859.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	60.5	140.0	88.5	60.0	127.0	93.0
Merged-chr15-82337179-2	chr15	82336679	82337679	+	963.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008669, intron 3 of 9)	intron (NM_008669, intron 3 of 9)	1647.0	NM_001355546	17939.0	Mm.20325	NM_008669	ENSMUSG00000022453	Naga	-	N-acetyl galactosaminidase, alpha	protein-coding	0.0	0.0	0.0	7.5	0.0	2.0
Merged-chr3-94583649-2	chr3	94583149	94584149	+	963.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029721)	promoter-TSS (NM_029721)	-933.0	NM_029721	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	14.0	33.0	37.0	7.5	20.5	37.0
Merged-chr6-87809804-4	chr6	87809340	87810340	+	963.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133717)	promoter-TSS (NM_133717)	-83.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-107717478-2	chr5	107716978	107717978	+	963.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010278, exon 6 of 6)	3' UTR (NM_010278, exon 6 of 6)	6865.0	NM_010278	14581.0	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80202115-4	chr7	80201607	80202607	+	963.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	3666.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	3.5	10.0	4.0	5.5	11.0	4.0
Merged-chr7-16299801-4	chr7	16299294	16300294	+	963.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9789.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0.0	7.0	0.5	0.0	0.5	0.5
Merged-chr15-89075418-4	chr15	89074903	89075903	+	963.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355617)	promoter-TSS (NM_001355617)	451.0	NR_040417	69120.0	Mm.276391	NR_040417	ENSMUSG00000087331	1810021B22Rik	-	RIKEN cDNA 1810021B22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59856927-4	chr13	59856450	59857450	+	963.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33803.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	10.0	41.5	28.5	69.0	142.0	110.5
Merged-chr3-67512998-4	chr3	67512500	67513500	+	963.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164763, intron 1 of 5)	intron (NM_001164763, intron 1 of 5)	2523.0	NM_001164763	109222.0	Mm.38002	NM_001164763	ENSMUSG00000049404	Rarres1	5430417P09Rik|AI662122	retinoic acid receptor responder (tazarotene induced) 1	protein-coding	1.5	8.5	1.5	8.0	2.5	2.0
Merged-chr1-156672923-4	chr1	156672402	156673402	+	963.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023141, intron 2 of 5)	RMER17C|LTR|ERVK	1437.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	9.5	9.0	1.5	1.0	5.5	10.5
Merged-chr2-52296966-4	chr2	52296443	52297443	+	963.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010889, intron 27 of 156)	intron (NM_010889, intron 27 of 156)	5941.0	NR_040620	78049.0	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110285325-2	chr5	110284825	110285825	+	963.6999509999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011132)	promoter-TSS (NM_011132)	843.0	NM_008993	19301.0	Mm.21853	NM_008993	ENSMUSG00000029499	Pxmp2	22kDa|PMP22	peroxisomal membrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-148810730-3	chr3	148810235	148811235	+	963.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	143900.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.0	13.5	3.0	0.0	13.5	5.0
Merged-chr3-95655751-4	chr3	95655266	95656266	+	963.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2955.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.0	2.5	2.0	0.0	10.0	3.5
Merged-chr15-83134418-4	chr15	83133848	83134848	+	963.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 3 of 7)	intron (NM_001347082, intron 3 of 7)	-11547.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36752166-4	chr16	36751671	36752671	+	963.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021301, intron 21 of 21)	intron (NM_021301, intron 21 of 21)	32791.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25303687-4	chr12	25303199	25304199	+	963.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	174525.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	8.0	20.5	12.5	8.5	15.5	9.5
Merged-chr9-26783631-3	chr9	26783126	26784126	+	963.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153803, intron 6 of 19)	Lx8|LINE|L1	22842.0	NM_001310768	244757.0	Mm.293696	NM_153803	ENSMUSG00000036395	Glb1l2	-	galactosidase, beta 1-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81222049-4	chr13	81221562	81222562	+	963.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 85 of 89)	L1_Mur3|LINE|L1	257988.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94585961-3	chr11	94585457	94586457	+	963.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153807, intron 1 of 15)	B3|SINE|B2	15829.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	5.5	4.0	7.5	7.0	24.5	24.5
Merged-chr6-98846453-4	chr6	98845942	98846942	+	963.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	181856.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54993308-3	chr18	54992828	54993828	+	963.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360787)	promoter-TSS (NM_001360787)	-737.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122257264-3	chr7	122256756	122257756	+	963.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31869.0	NM_001316672	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80696121-4	chr10	80695615	80696615	+	963.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	5705.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	1.0	7.0	5.0	1.5	4.0	3.5
Merged-chr2-160020592-2	chr2	160020092	160021092	+	963.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NR_040499, intron 1 of 3)	intron (NR_040499, intron 1 of 3)	3939.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91375147-4	chr16	91374658	91375658	+	963.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 1 of 7)	ORR1C2|LTR|ERVL-MaLR	2375.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	5.5	6.0	15.0	15.5	27.0	15.5
Merged-chr6-122653281-4	chr6	122652771	122653771	+	963.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26847.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135630144-4	chr3	135629653	135630653	+	963.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 6 of 24)	intron (NM_008689, intron 6 of 24)	61394.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	7.5	17.0	9.0	6.0	14.5	9.5
Merged-chr3-103130484-4	chr3	103129970	103130970	+	963.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177857, intron 1 of 18)	intron (NM_177857, intron 1 of 18)	2914.0	NM_177857	329727.0	Mm.293641	NM_177857	ENSMUSG00000007379	Dennd2c	A930010I20Rik	DENN/MADD domain containing 2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-19955874-4	chr11	19955367	19956367	+	963.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	B4|SINE|B4	31425.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99169177-6	chr10	99168692	99169692	+	963.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	61057.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-79672029-4	chr1	79671531	79672531	+	963.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183027)	promoter-TSS (NM_183027)	-59.0	NM_183027	252903.0	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	0.0	0.0	3.0	0.0	4.5	2.5
Merged-chr6-15715195-4	chr6	15714691	15715691	+	963.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_1B-I_MM-int|LTR|ERVK	-5470.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80998090-7	chr7	80997608	80998608	+	963.619019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178707, intron 1 of 9)	intron (NM_178707, intron 1 of 9)	4424.0	NM_178707	233410.0	Mm.29525	NM_178707	ENSMUSG00000005621	Zfp592	A730014M16Rik|Znf592	zinc finger protein 592	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114813001-4	chr11	114812604	114813604	+	963.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14180.0	NM_181749	217302.0	Mm.269127	NM_181749	ENSMUSG00000034677	Gpr142	PGR2	G protein-coupled receptor 142	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70447598-4	chr11	70447109	70448109	+	963.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4322.0	NM_025397	66172.0	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-78630688-5	chr8	78630194	78631194	+	963.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009981, intron 5 of 10)	intron (NM_001009981, intron 5 of 10)	121366.0	NM_001282108	76775.0	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172377227-4	chr1	172376711	172377711	+	963.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026234, exon 1 of 1)	exon (NM_026234, exon 1 of 1)	680.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	24.0	54.0	40.5	36.0	69.0	32.5
Merged-chr15-102311662-4	chr15	102311158	102312158	+	963.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356312, intron 13 of 30)	PB1D10|SINE|Alu	-14458.0	NM_027044	56612.0	Mm.158264	NM_020031	ENSMUSG00000001289	Pfdn5	1190001O17Rik|1700010A06Rik|D15Ertd697e|Eig1|MM-1	prefoldin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80963818-4	chr10	80963319	80964319	+	963.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	33728.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75170623-4	chr10	75170114	75171114	+	963.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081412, intron 16 of 22)	intron (NM_001081412, intron 16 of 22)	-41459.0	NM_153406	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26090456-4	chr17	26089922	26090922	+	963.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011933)	promoter-TSS (NM_011933)	-258.0	NM_011933	26378.0	Mm.292869	NM_011933	ENSMUSG00000036775	Decr2	-	2-4-dienoyl-Coenzyme A reductase 2, peroxisomal	protein-coding	2.0	11.5	6.0	2.0	20.5	3.0
Merged-chr11-62559116-4	chr11	62558611	62559611	+	963.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7380.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-98319929-3	chr5	98319397	98320397	+	963.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9407.0	NM_001024614	75784.0	Mm.443240	NM_001024614	ENSMUSG00000057816	1700007G11Rik	4930428O21Rik	RIKEN cDNA 1700007G11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80035662-3	chr15	80035140	80036140	+	963.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20832.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	94.0	175.0	113.0	93.0	224.0	201.0
Merged-chr16-17561324-3	chr16	17560835	17561835	+	963.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011028)	promoter-TSS (NM_011028)	-88.0	NM_001145435	74685.0	Mm.38634	NM_029053	ENSMUSG00000022759	Lrrc74b	4930451C15Rik|mCG12354|mCP17390	leucine rich repeat containing 74B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-99224475-4	chr4	99223990	99224990	+	963.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001145967, exon 7 of 11)	exon (NM_001145967, exon 7 of 11)	30343.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40744416-4	chr9	40743927	40744927	+	963.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	-56846.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	28.0	44.0	33.0	128.5	162.0	115.0
Merged-chr6-86572579-4	chr6	86572053	86573053	+	963.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	45152.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129585795-4	chr2	129585299	129586299	+	963.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7040.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	172.5	273.0	193.0	93.0	272.5	180.5
Merged-chr17-13905782-4	chr17	13905275	13906275	+	963.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010806)	TTS (NM_010806)	-42598.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73140737-4	chr14	73140210	73141210	+	963.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1800.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21136590-4	chr9	21136120	21137120	+	963.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5345.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76195806-4	chr15	76195319	76196319	+	963.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201394)	promoter-TSS (NM_201394)	-109.0	NM_201394	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166553676-4	chr2	166553184	166554184	+	963.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10838.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95951245-4	chr13	95950750	95951750	+	963.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59328.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	4.0	0.0	8.5	1.5	5.5	2.5
Merged-chr5-134182904-2	chr5	134182404	134183404	+	963.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1134.0	NM_001359852	114674.0	Mm.218744	NM_053266	ENSMUSG00000015942	Gtf2ird2	1700012P16Rik	GTF2I repeat domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-27264356-4	chr8	27263884	27264884	+	963.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007918, intron 1 of 2)	intron (NM_007918, intron 1 of 2)	4057.0	NM_007918	13685.0	Mm.6700	NM_007918	ENSMUSG00000031490	Eif4ebp1	4e-bp1|AA959816|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-107057445-1	chr8	107056945	107057945	+	963.5	f1_balb.idr	promoter-TSS (NM_139229)	promoter-TSS (NM_139229)	568.0	NR_028367	66164.0	Mm.334789	NM_025391	ENSMUSG00000031917	Nip7	1110017C15Rik|6330509M23Rik|AA408773|AA410017|PEachy	NIP7, nucleolar pre-rRNA processing protein	protein-coding	20.0	58.0	33.5	13.5	27.5	37.0
Merged-chr19-10173655-4	chr19	10173169	10174169	+	963.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9219.0	NM_146094	76267.0	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	5.5	37.0	24.5	5.5	63.5	46.5
Merged-chr5-112286484-2	chr5	112285984	112286984	+	963.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	9793.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-126631729-2	chr3	126631225	126632225	+	963.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	34774.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	5.5	20.0	7.0	2.0	2.0	12.0
Merged-chr10-80902660-2	chr10	80902160	80903160	+	963.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010722, exon 12 of 12)	3' UTR (NM_010722, exon 12 of 12)	-1691.0	NM_013895	30055.0	Mm.142132	NM_013895	ENSMUSG00000020219	Timm13	D10Ertd378e|Tim9|Timm9	translocase of inner mitochondrial membrane 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25666878-2	chr14	25666378	25667378	+	963.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310666)	TTS (NM_001310666)	-27292.0	NM_134084	105675.0	Mm.41656	NM_134084	ENSMUSG00000021868	Ppif	AW457192|CyP-D|CyP-F|CypD|PPIase	peptidylprolyl isomerase F (cyclophilin F)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-140952858-2	chr7	140952358	140953358	+	963.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2619.0	NM_053088	73835.0	Mm.389989	NM_053088	ENSMUSG00000025489	Ifitm5	1110003J06Rik|AW213665|Bril|DSPA1|Hrmp1|Hrtm1	interferon induced transmembrane protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-33337338-3	chr14	33336837	33337837	+	963.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 4 of 10)	intron (NM_153800, intron 4 of 10)	73687.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-10495442-4	chr7	10494924	10495924	+	963.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009577)	promoter-TSS (NM_009577)	-43.0	NM_009577	22775.0	Mm.49441	NM_009577	ENSMUSG00000030393	Zik1	-	zinc finger protein interacting with K protein 1	protein-coding	0.0	0.5	1.0	0.0	8.0	1.0
Merged-chr5-144752618-2	chr5	144752118	144753118	+	963.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177735, intron 2 of 7)	intron (NM_177735, intron 2 of 7)	8960.0	NM_177735	243339.0	Mm.126793	NM_177735	ENSMUSG00000043388	Tmem130	BC067004|C130036G08	transmembrane protein 130	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-41315152-4	chr12	41314666	41315666	+	963.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	170891.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-97441357-4	chr13	97440802	97441802	+	963.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110432, intron 1 of 1)	MLT1D|LTR|ERVL-MaLR	6332.0	NR_110432	100039691.0	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95739559-4	chr3	95739070	95740070	+	963.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252653)	promoter-TSS (NM_001252653)	-1.0	NM_001252653	13601.0	Mm.3433	NM_007899	ENSMUSG00000028108	Ecm1	AI663821|p85	extracellular matrix protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31173529-2	chr14	31173029	31174029	+	963.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022656, intron 18 of 20)	intron (NM_022656, intron 18 of 20)	-4888.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125726841-5	chr8	125726462	125727462	+	963.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-7241.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57142265-2	chr9	57141765	57142765	+	963.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028636)	TTS (NM_028636)	6040.0	NM_028347	72774.0	Mm.35749	NM_028347	ENSMUSG00000032298	Neil1	2810450N13Rik|NEH1|Nei1	nei endonuclease VIII-like 1 (E. coli)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-94058503-4	chr1	94057999	94058999	+	963.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-5946.0	NM_008798	18566.0	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167714411-2	chr2	167713911	167714911	+	963.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23234.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-54913055-2	chr1	54912555	54913555	+	963.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	13332.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181600039-2	chr2	181599539	181600539	+	963.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172676)	promoter-TSS (NM_172676)	-892.0	NM_172676	229011.0	Mm.205422	NM_172676	ENSMUSG00000038605	Samd10	D930033N23Rik|E130318E08	sterile alpha motif domain containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-4612872-4	chr10	4612381	4613381	+	963.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007956, intron 1 of 8)	intron (NM_007956, intron 1 of 8)	892.0	NM_007956	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116681160-4	chr11	116680670	116681670	+	963.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009180, intron 6 of 8)	intron (NM_009180, intron 6 of 8)	6573.0	NR_028570	100216538.0		NR_028570	ENSMUSG00000065094	Snord1a	snR38	small nucleolar RNA, C/D box 1A	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81905204-4	chr15	81904712	81905712	+	963.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080633, intron 7 of 17)	Tigger20a|DNA|TcMar-Tigger	21001.0	NM_030229	78929.0	Mm.215115	NM_030229	ENSMUSG00000022476	Polr3h	5031409G22Rik|RPC8	polymerase (RNA) III (DNA directed) polypeptide H	protein-coding	0.0	1.0	1.0	0.0	0.0	2.5
Merged-chr2-154300706-4	chr2	154300186	154301186	+	963.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-6558.0	NM_001025574	433492.0	Mm.330682	NM_001025574	ENSMUSG00000067996	Bpifb9b	5430413K10Rik|AI413838	BPI fold containing family B, member 9B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117231444-4	chr2	117230955	117231955	+	963.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18284.0	NM_026620	68215.0	Mm.219389	NM_026620	ENSMUSG00000027349	Fam98b	2610510H03Rik	family with sequence similarity 98, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51224192-3	chr11	51223696	51224696	+	963.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3778.0	NR_110444	71297.0	Mm.390420	NR_110444	ENSMUSG00000086646	Platr20	5133400J02Rik	pluripotency associated transcript 20	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79177323-4	chr3	79176790	79177790	+	963.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31415.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	21.5	53.5	54.0	22.0	76.0	51.5
Merged-chr11-87426447-4	chr11	87425975	87426975	+	963.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031386, intron 1 of 30)	intron (NM_031386, intron 1 of 30)	-1116.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27332806-4	chr7	27332307	27333307	+	963.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175641, intron 4 of 32)	intron (NM_175641, intron 4 of 32)	841.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32363701-4	chr4	32363167	32364167	+	963.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53768.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-10978167-4	chr4	10977665	10978665	+	963.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29454.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	16.0	87.0	50.0	31.5	57.5	33.5
Merged-chr17-78419369-4	chr17	78418843	78419843	+	963.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1191.0	NM_001285940	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49454792-4	chr7	49454268	49455268	+	963.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 7 of 37)	intron (NM_175272, intron 7 of 37)	182067.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125623316-4	chr7	125622770	125623770	+	963.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021887, intron 2 of 8)	intron (NM_021887, intron 2 of 8)	19841.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	25.5	51.0	34.0	60.0	167.5	108.0
Merged-chr2-6258656-4	chr2	6258163	6259163	+	963.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 3 of 6)	intron (NR_040333, intron 3 of 6)	-45669.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	17.5	11.0	7.0	3.5	9.5	12.5
Merged-chr6-129469003-3	chr6	129468484	129469484	+	963.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_132130, exon 3 of 6)	non-coding (NR_132130, exon 3 of 6)	3795.0	NM_001309637	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	19.5	38.0	27.5	23.5	26.0	18.0
Merged-chr1-85986984-4	chr1	85986501	85987501	+	963.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25946.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-60608970-4	chr19	60608475	60609475	+	963.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger8|DNA|TcMar-Tigger	-27952.0	NM_001172096	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	1.5	0.5	4.5	0.5	0.0	7.5
Merged-chr2-45028306-4	chr2	45027801	45028801	+	963.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	MIRc|SINE|MIR	-5124.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35265394-2	chr17	35264894	35265894	+	963.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_001267808, intron 7 of 11)	intron (NM_001267808, intron 7 of 11)	2271.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	3.0	1.0	1.5	0.0	4.0	2.5
Merged-chr13-41819666-4	chr13	41819153	41820153	+	963.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145875, intron 2 of 6)	intron (NM_001145875, intron 2 of 6)	27835.0	NM_175417	109254.0	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3913643-4	chr4	3913138	3914138	+	963.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019969, intron 2 of 5)	intron (NM_019969, intron 2 of 5)	24767.0	NM_019969	56711.0	Mm.331467	NM_019969	ENSMUSG00000003282	Plag1	-	pleiomorphic adenoma gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-30513333-4	chr18	30512815	30513815	+	963.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	240450.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130785124-4	chr2	130784626	130785626	+	963.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029432, intron 11 of 36)	intron (NM_029432, intron 11 of 36)	18975.0	NR_024097	100043766.0	Mm.447040	NR_024097		Gm14057	-	Ppp1r14c pseudogene	pseudo	17.0	29.0	18.5	40.0	89.5	40.5
Merged-chr18-62985455-4	chr18	62984977	62985977	+	963.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028017, intron 5 of 11)	intron (NM_028017, intron 5 of 11)	7561.0	NM_028017	108123.0	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116109670-4	chr11	116109180	116110180	+	963.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172570, exon 1 of 6)	exon (NM_172570, exon 1 of 6)	555.0	NM_001205081	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-79485752-4	chr14	79485257	79486257	+	963.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 1 of 8)	L1M3|LINE|L1	-4489.0	NM_018765	22380.0	Mm.476813	NM_018765	ENSMUSG00000022023	Wbp4	AW545037|BB101031|FBP21	WW domain binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96675637-4	chr9	96675143	96676143	+	963.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43802.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	2.0	3.0	4.0	4.5	4.5	0.0
Merged-chr19-6987687-4	chr19	6987227	6988227	+	963.357117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001185164)	promoter-TSS (NM_001185164)	-76.0	NM_011697	22340.0	Mm.15607	NM_011697	ENSMUSG00000024962	Vegfb	VEGF-B|Vrf	vascular endothelial growth factor B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100991153-4	chr7	100990656	100991656	+	963.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20842.0	NM_001302347	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	32.0	35.0	9.0	6.5	29.0	29.5
Merged-chr4-141761785-4	chr4	141761290	141762290	+	963.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172338)	TTS (NM_172338)	15115.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	18.5	33.5	22.0	29.5	51.5	39.5
Merged-chr8-75108741-4	chr8	75108291	75109291	+	963.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008566)	promoter-TSS (NM_008566)	-718.0	NM_001302540	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	8.0	31.0	26.0	20.5	67.0	23.5
Merged-chr6-53460136-4	chr6	53459624	53460624	+	963.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 5 of 10)	intron (NM_001327821, intron 5 of 10)	-113250.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-37483681-3	chr17	37483154	37484154	+	963.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347387)	promoter-TSS (NM_001347387)	-100.0	NM_001347387	14990.0	Mm.329041	NM_008204	ENSMUSG00000016283	H2-M2	H-2M2|Thy19.4	histocompatibility 2, M region locus 2	protein-coding	0.0	1.0	0.0	0.0	0.0	0.5
Merged-chr18-46152606-4	chr18	46152085	46153085	+	963.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46233.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	3.5	23.5	1.5	0.5	2.0	8.5
Merged-chr12-3365215-4	chr12	3364716	3365716	+	963.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008445)	promoter-TSS (NM_008445)	84.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27960635-3	chr15	27960155	27961155	+	963.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	ORR1D2|LTR|ERVL-MaLR	65193.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-55711087-3	chr7	55710610	55711610	+	963.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57074.0	NM_001310740	233274.0	Mm.44425	NM_178706	ENSMUSG00000051504	Siglech	6430529G09Rik|Siglec-H	sialic acid binding Ig-like lectin H	protein-coding	2.5	0.0	1.0	6.0	2.0	3.5
Merged-chr1-105977562-6	chr1	105977060	105978060	+	963.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4a2|LINE|L1	12722.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	10.5	42.0	31.0	20.0	23.5	18.0
Merged-chr7-75669601-4	chr7	75669063	75670063	+	963.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 10 of 36)	intron (NM_029332, intron 10 of 36)	-178775.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	30.0	86.0	30.0	26.0	70.5	28.0
Merged-chr10-117715372-4	chr10	117714879	117715879	+	963.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30D_MM|LTR|ERV1	-4621.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16618735-4	chr1	16618231	16619231	+	963.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271016, intron 1 of 6)	CpG	607.0	NM_025773	66799.0	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-47690059-4	chr8	47689559	47690559	+	963.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14900.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88420843-4	chr10	88420351	88421351	+	963.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004164, intron 7 of 20)	intron (NM_001004164, intron 7 of 20)	-38736.0	NM_011517	20962.0	Mm.297977	NM_011517	ENSMUSG00000020059	Sycp3	Cor1|Scp3	synaptonemal complex protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-9989836-4	chr2	9989335	9990335	+	963.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027748, intron 2 of 6)	intron (NM_027748, intron 2 of 6)	58774.0	NM_027748	209361.0	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35914686-2	chr17	35914169	35915169	+	963.2666630000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361455, intron 2 of 5)	intron (NM_001361455, intron 2 of 5)	1771.0	NM_001361455	66973.0	Mm.29484	NM_025878	ENSMUSG00000024436	Mrps18b	2400002C15Rik|MRP-S18-2|S18mt-b	mitochondrial ribosomal protein S18B	protein-coding	8.0	2.5	0.0	0.0	0.5	0.0
Merged-chr6-59174181-4	chr6	59173656	59174656	+	963.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-34714.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109451633-4	chr3	109451129	109452129	+	963.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	110946.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	29.5	47.5	49.0	24.5	79.0	74.5
Merged-chr2-34976617-4	chr2	34976128	34977128	+	963.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-14856.0	NM_001326601	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44320871-4	chr9	44320356	44321356	+	963.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027909)	promoter-TSS (NM_027909)	-574.0	NM_027909	71764.0	Mm.491174	NM_027909	ENSMUSG00000032120	C2cd2l	1300006O23Rik|Tmem24	C2 calcium-dependent domain containing 2-like	protein-coding	1.0	5.5	0.0	0.0	0.0	0.0
Merged-chr19-9976392-4	chr19	9975905	9976905	+	963.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4195.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	9.0	19.0	12.5	9.0	19.0	12.5
Merged-chr19-32594124-3	chr19	32593621	32594621	+	963.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1594.0	NM_001201470	23972.0	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83020867-4	chr11	83020385	83021385	+	963.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167743)	promoter-TSS (NM_001167743)	-75.0	NM_181545	276950.0	Mm.491599	NM_181545	ENSMUSG00000035208	Slfn8	-	schlafen 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118147405-5	chr11	118146925	118147925	+	963.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18206.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59231800-4	chr2	59231305	59232305	+	963.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	70955.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-69079523-4	chr17	69079018	69080018	+	963.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355732, intron 1 of 21)	intron (NM_001355732, intron 1 of 21)	3841.0	NM_001355732	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155116713-3	chr4	155116214	155117214	+	963.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356327, intron 10 of 12)	intron (NM_001356327, intron 10 of 12)	30110.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59530848-4	chr15	59530341	59531341	+	963.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-117813.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	7.0	0.0	7.5	10.0	3.5	2.0
Merged-chr7-90138577-4	chr7	90138087	90139087	+	963.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	8374.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	13.0	34.5	24.0	10.0	37.5	15.5
Merged-chr7-98082623-4	chr7	98082124	98083124	+	963.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008663, intron 18 of 48)	intron (NM_008663, intron 18 of 48)	26624.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	19.0	42.5	24.0	33.5	45.5	55.0
Merged-chr17-26229993-4	chr17	26229481	26230481	+	963.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	14261.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	43.5	47.0	19.5	38.5	32.5	46.0
Merged-chr4-132505475-4	chr4	132504981	132505981	+	963.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144907, intron 1 of 9)	intron (NM_144907, intron 1 of 9)	4975.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	7.0	7.0	6.5	4.5	5.5	6.0
Merged-chr7-80454975-4	chr7	80454450	80455450	+	963.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007550)	TTS (NM_007550)	-49514.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0.0	0.5	1.0	0.0	2.0	2.0
Merged-chr1-74250318-4	chr1	74249835	74250835	+	963.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 4 of 10)	intron (NM_001357387, intron 4 of 10)	13818.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108612166-4	chr8	108611661	108612661	+	963.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27484.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	1.0	18.0	4.5	7.5	12.5	8.0
Merged-chr12-59217706-2	chr12	59217206	59218206	+	963.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033156, intron 1 of 3)	B1_Mur4|SINE|Alu	1777.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37689666-4	chr19	37689155	37690155	+	963.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001105201, intron 4 of 5)	intron (NM_001105201, intron 4 of 5)	3975.0	NM_001105201	546726.0	Mm.457750	NM_001105201	ENSMUSG00000062432	Cyp26c1	EG546726	cytochrome P450, family 26, subfamily c, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-38183158-4	chr7	38182664	38183664	+	963.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028166)	promoter-TSS (NM_028166)	-53.0	NM_001085385	72244.0	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	29.5	17.0	21.5	7.5	21.0	5.0
Merged-chr1-92652705-4	chr1	92652183	92653183	+	963.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3842.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32940880-4	chr5	32940385	32941385	+	963.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025426, intron 28 of 42)	intron (NM_001025426, intron 28 of 42)	77164.0	NM_001170567	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	26.0	31.5	47.5	25.0	37.0	26.0
Merged-chr10-14042886-4	chr10	14042335	14043335	+	963.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	76456.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	82.5	91.5	89.0	73.0	166.5	163.5
Merged-chr8-82941802-4	chr8	82941274	82942274	+	963.125	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 1 of 6)	L1MB2|LINE|L1	78418.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	4.5	23.0	5.0	4.0	19.5	13.5
Merged-chr17-29082139-4	chr17	29081633	29082633	+	963.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3007.0	NR_036469	100504267.0	Mm.438550	NR_036469	ENSMUSG00000085912	Trp53cor1	Gm16197|linc-p21|lincRNA-p21	tumor protein p53 pathway corepressor 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153749812-2	chr1	153749299	153750299	+	963.125	f0_balb.idr|f0_c57.idr	intron (NM_011882, intron 1 of 8)	intron (NM_011882, intron 1 of 8)	373.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103019259-4	chr2	103018733	103019733	+	963.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54280.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	0.0	1.5	3.0	0.0	0.0	0.0
Merged-chr9-32507713-4	chr9	32507200	32508200	+	963.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	33752.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-176818341-4	chr1	176817834	176818834	+	963.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 1 of 18)	intron (NM_001357390, intron 1 of 18)	3674.0	NM_029756	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11786822-3	chr19	11786324	11787324	+	963.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011502, intron 5 of 10)	intron (NM_011502, intron 5 of 10)	16409.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	5.0	14.0	2.0	6.0	12.5	20.0
Merged-chr5-149690043-3	chr5	149689534	149690534	+	963.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081204, intron 1 of 14)	intron (NM_001081204, intron 1 of 14)	11777.0	NM_001081204	381694.0	Mm.45060	NM_001081204	ENSMUSG00000051950	B3glct	B3galtl|Gm1057	beta-3-glucosyltransferase	protein-coding	8.0	6.0	11.5	4.0	31.0	16.0
Merged-chr4-34081315-3	chr4	34080792	34081792	+	963.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31225.0	NM_026293	67652.0	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80439956-3	chr7	80439454	80440454	+	963.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1b|LINE|L1	-34518.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	8.0	15.5	11.0	0.0	9.0	4.5
Merged-chr18-65691602-4	chr18	65691100	65692100	+	963.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6668.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	47.0	75.0	53.0	52.0	107.5	72.5
Merged-chr16-24919900-4	chr16	24919401	24920401	+	963.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-139738.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43538867-4	chr17	43538365	43539365	+	963.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254953, intron 2 of 2)	intron (NM_001254953, intron 2 of 2)	4774.0	NM_001254953	100043332.0	Mm.17626	NM_001254953	ENSMUSG00000096140	Ankrd66	AU041848|D730048J04Rik|Gm4368	ankyrin repeat domain 66	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135686910-4	chr1	135686402	135687402	+	963.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33161.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-97087424-6	chr5	97086914	97087914	+	963.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_080708, exon 16 of 16)	exon (NM_080708, exon 16 of 16)	24182.0	NM_001359910	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-26814084-4	chr14	26813566	26814566	+	963.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80538.0	NM_001170748	142687.0	Mm.138259	NM_080856	ENSMUSG00000021898	Asb14	Asb-14	ankyrin repeat and SOCS box-containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113659851-4	chr6	113659331	113660331	+	963.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	21364.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72815956-3	chr8	72815452	72816452	+	963.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010687, exon 15 of 15)	exon (NM_010687, exon 15 of 15)	54293.0	NM_007975	14065.0	Mm.12948	NM_007975	ENSMUSG00000050147	F2rl3	PAR4	coagulation factor II (thrombin) receptor-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12999301-3	chr17	12998806	12999806	+	963.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-6767.0	NM_175394	60532.0	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24300948-4	chr7	24300419	24301419	+	963.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001199321)	TTS (NM_001199321)	-1370.0	NM_009561	22719.0	Mm.12832	NM_009561	ENSMUSG00000050605	Zfp61	-	zinc finger protein 61	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-14131249-4	chr10	14130779	14131779	+	963.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010437, exon 4 of 9)	exon (NM_010437, exon 4 of 9)	164900.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-27435102-4	chr16	27434595	27435595	+	963.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025615, intron 5 of 9)	intron (NM_001025615, intron 5 of 9)	46139.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9837134-4	chr19	9836633	9837633	+	963.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	62400.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167057813-4	chr2	167057321	167058321	+	963.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033196, intron 2 of 13)	intron (NM_001033196, intron 2 of 13)	-5113.0	NR_138563	68949.0	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-74780066-4	chr18	74779534	74780534	+	963.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177470, intron 1 of 9)	intron (NM_177470, intron 1 of 9)	822.0	NM_177470	52538.0	Mm.245724	NM_177470	ENSMUSG00000036880	Acaa2	0610011L04Rik|AI255831|AI265397|D18Ertd240e	acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-29454972-4	chr16	29454459	29455459	+	963.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172613, intron 11 of 29)	intron (NM_172613, intron 11 of 29)	-76227.0	NM_175650	268878.0	Mm.9823	NM_175650	ENSMUSG00000048939	Atp13a5	C630015F21Rik	ATPase type 13A5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72164511-4	chr6	72163968	72164968	+	963.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41271.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134857092-2	chr4	134856592	134857592	+	963.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-3747.0	NM_025382	66146.0	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61|Maco1	transmembrane protein 57	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88295240-2	chr8	88294740	88295740	+	963.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037724, intron 2 of 27)	intron (NM_001037724, intron 2 of 27)	1036.0	NM_001037724	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	16.5	27.0	12.0	18.0	10.0	12.5
Merged-chr12-79295353-1	chr12	79294853	79295853	+	963.0	f1_c57bl6.idr	intron (NM_001008550, intron 2 of 41)	B1_Mm|SINE|Alu	929.0	NM_001008550	211978.0	Mm.297919	NM_001008550	ENSMUSG00000066440	Zfyve26	4930465A13|9330197E15Rik|A630028O16Rik|Gm893|mKIAA0321	zinc finger, FYVE domain containing 26	protein-coding	1.5	5.0	5.5	1.5	1.5	0.0
Merged-chr11-95346501-2	chr11	95346001	95347001	+	963.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172543, intron 1 of 7)	intron (NM_172543, intron 1 of 7)	9483.0	NM_172543	215512.0	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-88709688-2	chr9	88709187	88710187	+	963.0	f0_balb.idr|f0_c57.idr	intron (NM_001359992, intron 2 of 2)	intron (NM_001359992, intron 2 of 2)	9900.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-37010222-4	chr8	37009738	37010738	+	963.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126063, intron 2 of 2)	intron (NR_126063, intron 2 of 2)	14000.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	25.5	53.0	75.0	30.5	56.5	65.5
Merged-chr5-109553287-2	chr5	109552787	109553787	+	963.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5706.0	NM_016715	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	1.5	0.5	0.0	1.5	3.0	0.0
Merged-chr14-19768870-4	chr14	19768375	19769375	+	963.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008695, exon 4 of 21)	exon (NM_008695, exon 4 of 21)	17618.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129401524-2	chr2	129401024	129402024	+	963.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30385.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	2.0	0.0	2.0	7.0	8.5	1.5
Merged-chr7-63933997-4	chr7	63933489	63934489	+	963.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	4926.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-55106733-4	chr15	55106217	55107217	+	963.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045093, intron 4 of 4)	intron (NR_045093, intron 4 of 4)	-5600.0	NM_145470	97998.0	Mm.295397	NM_145470	ENSMUSG00000022419	Deptor	Depdc6	DEP domain containing MTOR-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32862588-2	chr5	32862088	32863088	+	963.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR42-int|LTR|ERVK	-1133.0	NM_177786	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	0.0	0.0	3.0	0.0	0.0	3.0
Merged-chr3-90249432-2	chr3	90248932	90249932	+	963.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013901, exon 3 of 4)	exon (NM_013901, exon 3 of 4)	1240.0	NM_013901	30791.0	Mm.294709	NM_013901	ENSMUSG00000052310	Slc39a1	Zip1|Zirtl	solute carrier family 39 (zinc transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64702436-2	chr9	64701936	64702936	+	963.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134399, intron 23 of 24)	intron (NM_001134399, intron 23 of 24)	35320.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-77795413-2	chr17	77794913	77795913	+	963.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B4_MM|LTR|ERVK	-404835.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-106236873-4	chr7	106236394	106237394	+	963.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21554.0	NM_029000	74558.0	Mm.458429	NM_029000	ENSMUSG00000045868	Gvin1	9130002C22Rik|9830104F22Rik|Iigs1|VLIG|VLIG-1	GTPase, very large interferon inducible 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-144854253-2	chr5	144853753	144854753	+	963.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081362, intron 68 of 70)	intron (NM_001081362, intron 68 of 70)	42563.0	NR_106006	102465629.0		NR_106006	ENSMUSG00000098822	Mir7039	Gm27824|mmu-mir-7039	microRNA 7039	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21159895-2	chr9	21159395	21160395	+	963.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-5819.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164868151-2	chr2	164867659	164868659	+	963.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-10451.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	65.5	109.5	124.0	60.5	164.0	101.5
Merged-chr5-139017609-1	chr5	139017109	139018109	+	963.0	f0_c57.idr	3' UTR (NM_001253890, exon 11 of 11)	3' UTR (NM_001253890, exon 11 of 11)	-22656.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122057176-2	chr10	122056676	122057676	+	963.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B1|LTR|ERVL	-9861.0	NM_001081037	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-87470466-4	chr12	87470005	87471005	+	963.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025507, intron 1 of 13)	MTB_Mm|LTR|ERVL-MaLR	1794.0	NM_025507	66354.0	Mm.271174	NM_025507	ENSMUSG00000021039	Snw1	2310008B08Rik|AW048543|NCoA-62|SKIP|Skiip	SNW domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4397903-3	chr19	4397366	4398366	+	963.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001984)	promoter-TSS (NM_001001984)	-789.0	NM_001001984	225876.0	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-55754577-4	chr17	55754077	55755077	+	963.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139138, intron 1 of 16)	L1_Mus2|LINE|L1	4593.0	NM_139138	52614.0	Mm.210497	NM_139138	ENSMUSG00000032915	Adgre4	D17Ertd479e|Egf-tm7|Emr4|Fire|Gpr127	adhesion G protein-coupled receptor E4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-62458550-4	chr3	62458036	62459036	+	963.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081295, intron 12 of 13)	intron (NM_001081295, intron 12 of 13)	48452.0	NM_028136	72162.0	Mm.224233	NM_028136	ENSMUSG00000027770	Dhx36	2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488	DEAH (Asp-Glu-Ala-His) box polypeptide 36	protein-coding	0.0	0.5	0.5	0.0	0.0	1.0
Merged-chr5-117307855-4	chr5	117307354	117308354	+	963.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-11412.0	NM_001033311	231668.0	Mm.298603	NM_001033311	ENSMUSG00000066894	Vsig10	-	V-set and immunoglobulin domain containing 10	protein-coding	0.0	0.5	0.5	2.0	0.5	1.0
Merged-chr17-35082745-1	chr17	35082245	35083245	+	963.0	f1_c57bl6.idr	intron (NM_001163192, intron 3 of 5)	intron (NM_001163192, intron 3 of 5)	2850.0	NM_001163192	433099.0	Mm.328993	NM_001163192	ENSMUSG00000034923	Ly6g6f	CJ068215	lymphocyte antigen 6 complex, locus G6F	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr5-5508010-2	chr5	5507510	5508510	+	963.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_022890, exon 4 of 4)	exon (NM_022890, exon 4 of 4)	6779.0	NM_001193660	64945.0	Mm.40132	NM_022890	ENSMUSG00000046798	Cldn12	-	claudin 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128379642-2	chr10	128379142	128380142	+	963.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172790, intron 5 of 27)	intron (NM_172790, intron 5 of 27)	2518.0	NM_172790	237615.0	Mm.440177	NM_172790	ENSMUSG00000014498	Ankrd52	6430544C07|G431002C21Rik	ankyrin repeat domain 52	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120137188-2	chr2	120136688	120137688	+	963.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 1 of 5)	ID_B1|SINE|B4	17387.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23827921-1	chr17	23827421	23828421	+	963.0	f1_c57bl6.idr	intron (NM_026305, intron 2 of 3)	intron (NM_026305, intron 2 of 3)	1188.0	NM_026305	67673.0	Mm.153758	NM_026305	ENSMUSG00000055839	Elob	0610040H15Rik|Tceb2	elongin B	protein-coding	10.0	3.0	15.0	9.0	3.0	4.0
Merged-chr1-86217916-1	chr1	86217416	86218416	+	963.0	f0_balb.idr	intron (NM_027456, intron 19 of 20)	intron (NM_027456, intron 19 of 20)	63136.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-45941614-2	chr8	45941114	45942114	+	963.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033246, exon 6 of 7)	exon (NM_001033246, exon 6 of 7)	6965.0	NM_001033246	212392.0	Mm.296649	NM_001033246	ENSMUSG00000071104	Ccdc110	Gm172	coiled-coil domain containing 110	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86165863-2	chr15	86165363	86166363	+	963.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145475, exon 2 of 13)	exon (NM_145475, exon 2 of 13)	-19865.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-145649645-8	chr3	145649192	145650192	+	962.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010516, intron 1 of 4)	CpG	293.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-62760115-10	chr14	62759639	62760639	+	962.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045503)	promoter-TSS (NR_045503)	-362.0	NR_045503	71000.0	Mm.399410	NR_045503	ENSMUSG00000097775	4931440J10Rik	-	RIKEN cDNA 4931440J10 gene	ncRNA	25.0	83.0	40.0	25.5	80.0	41.5
Merged-chr10-13299361-4	chr10	13298861	13299861	+	962.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	24928.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35337661-4	chr2	35337150	35338150	+	962.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013515)	promoter-TSS (NM_013515)	-641.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35740515-4	chr18	35740018	35741018	+	962.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289592)	promoter-TSS (NM_001289592)	36.0	NM_028261	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112335789-3	chr13	112335186	112336186	+	962.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168403, intron 5 of 11)	MIR|SINE|MIR	47168.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	5.5	13.0	3.0	9.5	2.0	4.5
Merged-chr5-140737408-3	chr5	140736896	140737896	+	962.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	intron (NM_173405, intron 2 of 7)	13269.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137293454-4	chr5	137292925	137293925	+	962.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106196)	promoter-TSS (NR_106196)	-355.0	NR_106196	102466887.0		NR_106196	ENSMUSG00000099145	Mir8116	Gm27485|mmu-mir-8116	microRNA 8116	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55835976-4	chr16	55835493	55836493	+	962.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030612, intron 2 of 13)	intron (NM_030612, intron 2 of 13)	2648.0	NM_030612	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112671880-4	chr13	112671384	112672384	+	962.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178746, intron 2 of 14)	Kanga1|DNA|TcMar-Tc2	11118.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170326999-4	chr2	170326501	170327501	+	962.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29360.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35330975-4	chr2	35330464	35331464	+	962.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013515, intron 1 of 6)	intron (NM_013515, intron 1 of 6)	6045.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47712696-9	chr9	47712253	47713253	+	962.892395	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	105455.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	67.0	145.0	133.5	73.5	123.5	80.5
Merged-chr4-32055365-4	chr4	32054917	32055917	+	962.8916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91310.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	16.5	33.0	32.5	15.0	32.5	36.0
Merged-chr5-105520087-3	chr5	105519547	105520547	+	962.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 1 of 3)	intron (NM_133897, intron 1 of 3)	576.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-113445690-3	chr2	113445256	113446256	+	962.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 2 of 16)	intron (NM_001285459, intron 2 of 16)	4692.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	19.5	33.5	32.5	40.0	84.0	49.5
Merged-chr15-6557119-4	chr15	6556610	6557610	+	962.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22737.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31005073-4	chr17	31004581	31005581	+	962.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177465, intron 20 of 21)	intron (NM_177465, intron 20 of 21)	50398.0	NM_177465	52020.0	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	30.0	21.5	11.5	28.0	42.0	22.5
Merged-chr16-30502711-4	chr16	30502194	30503194	+	962.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47884.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr16-78198924-4	chr16	78198402	78199402	+	962.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER119|DNA|hAT-Charlie	56552.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72881418-4	chr6	72880901	72881901	+	962.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019715, intron 1 of 6)	intron (NM_019715, intron 1 of 6)	17891.0	NM_001347231	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	5.0	0.0	1.5	1.5	0.0	4.5
Merged-chr7-114301692-3	chr7	114301187	114302187	+	962.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_A_Mam|LINE|RTE-X	-25571.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	11.5	9.0	8.0	14.5	24.5	17.0
Merged-chr8-80738467-4	chr8	80737997	80738997	+	962.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053124, intron 1 of 23)	CpG	962.0	NM_053124	93762.0	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22545942-4	chr16	22545429	22546429	+	962.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346673, intron 19 of 23)	intron (NM_001346673, intron 19 of 23)	-13745.0	NR_106170	102465887.0		NR_106170	ENSMUSG00000099071	Mir8095	Gm27566|mmu-mir-8095	microRNA 8095	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94524180-2	chr16	94523680	94524680	+	962.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 1 of 7)	intron (NM_007834, intron 1 of 7)	2449.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46487678-2	chr19	46487178	46488178	+	962.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_015752, exon 12 of 12)	3' UTR (NM_015752, exon 12 of 12)	-13970.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34807052-3	chr2	34806539	34807539	+	962.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164769, exon 7 of 7)	3' UTR (NM_001164769, exon 7 of 7)	-7127.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113015261-4	chr12	113014794	113015794	+	962.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081170, intron 1 of 23)	intron (NM_001081170, intron 1 of 23)	786.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54729948-4	chr6	54729446	54730446	+	962.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48322.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7041657-2	chr10	7041157	7042157	+	962.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-18472.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32930964-4	chr5	32930451	32931451	+	962.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025426, intron 25 of 42)	intron (NM_001025426, intron 25 of 42)	67230.0	NM_001170567	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	11.0	10.0	20.5	19.0	25.5	21.5
Merged-chr14-21812924-4	chr14	21812433	21813433	+	962.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18628.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106564462-4	chr11	106563964	106564964	+	962.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198292, intron 2 of 11)	intron (NM_198292, intron 2 of 11)	48466.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99225429-4	chr12	99224911	99225911	+	962.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 4 of 5)	intron (NM_183186, intron 4 of 5)	-62603.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47683083-3	chr9	47682606	47683606	+	962.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	135102.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	11.0	6.0	12.5	20.5	44.5	58.0
Merged-chr6-106283898-4	chr6	106283388	106284388	+	962.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109749, intron 5 of 25)	intron (NM_001109749, intron 5 of 25)	165123.0	NM_001109751	269784.0	Mm.321683	NM_173004	ENSMUSG00000064293	Cntn4	9630050B05|Axcam|BIG-2	contactin 4	protein-coding	3.0	1.5	2.0	3.5	3.0	2.5
Merged-chr2-94267106-4	chr2	94266588	94267588	+	962.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5689.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114100241-4	chr5	114099738	114100738	+	962.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033202)	promoter-TSS (NM_001033202)	-95.0	NM_001033202	100756.0	Mm.240421	NM_001033202	ENSMUSG00000029592	Usp30	6330590F17Rik|AI851327|D5Ertd483e	ubiquitin specific peptidase 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64929243-4	chr1	64928742	64929742	+	962.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 2 of 7)	RMER1B|Other|Other	27582.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-57775096-3	chr1	57774596	57775596	+	962.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144882, intron 1 of 13)	CpG	235.0	NM_144882	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	1.5	1.5	0.5	0.0	3.0	0.0
Merged-chr11-117087588-4	chr11	117087086	117088086	+	962.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	10238.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70373194-6	chr8	70372779	70373779	+	962.763916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016685)	promoter-TSS (NM_016685)	-269.0	NM_016685	12845.0	Mm.45071	NM_016685	ENSMUSG00000031849	Comp	TSP5	cartilage oligomeric matrix protein	protein-coding	0.0	2.5	3.0	0.0	0.0	1.0
Merged-chr18-80478232-4	chr18	80477735	80478735	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26D_MM|LTR|ERVK	-8568.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13531170-4	chr8	13530663	13531663	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31298.0	NM_025601	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84936643-4	chr2	84936146	84937146	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021398)	promoter-TSS (NM_021398)	0.0	NM_021398	58207.0	Mm.290729	NM_021398	ENSMUSG00000027074	Slc43a3	Eeg1|SEEEG-1	solute carrier family 43, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83619212-3	chr11	83618716	83619716	+	962.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 5 of 8)	intron (NR_036453, intron 5 of 8)	-26129.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149647539-2	chr4	149647039	149648039	+	962.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001290989, exon 18 of 18)	exon (NM_001290989, exon 18 of 18)	8028.0	NR_105990	102465983.0		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	3.5	0.0	0.0	1.5	0.0	0.0
Merged-chr10-87857382-4	chr10	87856892	87857892	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001314010)	promoter-TSS (NM_001314010)	-873.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-70889232-4	chr2	70888706	70889706	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-63726.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-55259979-4	chr9	55259477	55260477	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	intron (NM_032002, intron 3 of 7)	23648.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34306593-4	chr17	34306085	34307085	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010382, intron 1 of 5)	intron (NM_010382, intron 1 of 5)	718.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	194.5	591.5	316.5	296.0	687.0	421.5
Merged-chr17-70680062-3	chr17	70679563	70680563	+	962.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360665, intron 9 of 14)	(CA)n|Simple_repeat|Simple_repeat	118316.0	NM_001128181	224997.0	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	DLG associated protein 1	protein-coding	1.0	2.0	2.5	1.0	2.0	2.5
Merged-chr9-72965523-4	chr9	72965021	72966021	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163725, intron 4 of 6)	B1F|SINE|Alu	6736.0	NM_001163725	67685.0	Mm.31817	NM_026314	ENSMUSG00000092192	Dyx1c1	1700010I24Rik|Dnaaf4|EKN1|b2b811.1Clo|b2b811Clo	dyslexia susceptibility 1 candidate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114689840-4	chr5	114689346	114690346	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019821, intron 1 of 4)	intron (NM_019821, intron 1 of 4)	1089.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	40.0	207.0	106.0	29.5	106.0	62.5
Merged-chr11-113649565-4	chr11	113649094	113650094	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013581)	promoter-TSS (NM_013581)	65.0	NM_013581	16834.0	Mm.261620	NM_013581	ENSMUSG00000018661	Cog1	6030445I15|Ldlb|mKIAA1381	component of oligomeric golgi complex 1	protein-coding	6.0	20.0	6.5	6.0	20.0	6.5
Merged-chr19-53264011-4	chr19	53263513	53264513	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8808.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-56757466-4	chr4	56756974	56757974	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026079, intron 34 of 36)	intron (NM_026079, intron 34 of 36)	14052.0	NM_009611	11470.0	Mm.30959	NM_009611	ENSMUSG00000070979	Actl7a	Tact2	actin-like 7a	protein-coding	61.5	140.0	133.0	8.5	13.0	0.0
Merged-chr1-134344800-2	chr1	134344300	134345300	+	962.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-11872.0	NM_001144855	68507.0	Mm.295105	NM_001144855	ENSMUSG00000026458	Ppfia4	100042382|1110008G13Rik|AI448359|AI852265|C81506|Gm3812	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-121004849-4	chr4	121004328	121005328	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	12419.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	66.0	168.0	118.5	21.0	63.0	58.0
Merged-chr1-191422919-4	chr1	191422422	191423422	+	962.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25881.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-85374168-3	chr6	85373664	85374664	+	962.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177466, exon 1 of 5)	exon (NM_177466, exon 1 of 5)	470.0	NM_177466	52055.0	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75696998-4	chr18	75696531	75697531	+	962.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 1 of 11)	CpG	665.0	NM_201354	269037.0	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	0.0	5.0	4.0	0.5	0.0	3.0
Merged-chr17-24212464-4	chr17	24211972	24212972	+	962.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3085.0	NM_010947	18209.0	Mm.259542	NM_010947	ENSMUSG00000036473	Ntn3	Ntn2l	netrin 3	protein-coding	11.5	9.5	0.5	1.5	4.5	1.5
Merged-chr5-102055872-8	chr5	102055393	102056393	+	962.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	14028.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-72795688-4	chr11	72795179	72796179	+	962.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045536)	promoter-TSS (NM_001045536)	160.0	NM_001024926	192986.0	Mm.194755	NM_001024926	ENSMUSG00000057778	Cyb5d2	9330151E16Rik|Gm2	cytochrome b5 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-90050017-4	chr13	90049520	90050520	+	962.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028012, intron 3 of 7)	RLTR18-int|LTR|ERVK	39588.0	NM_028012	108138.0	Mm.37531	NM_028012	ENSMUSG00000021615	Xrcc4	2310057B22Rik|AW413319|AW545101	X-ray repair complementing defective repair in Chinese hamster cells 4	protein-coding	2.0	1.0	4.0	0.5	1.5	0.5
Merged-chr4-155481510-4	chr4	155480980	155481980	+	962.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9881.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97997546-4	chr11	97997045	97998045	+	962.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1372.0	NR_152188	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128221154-4	chr7	128220666	128221666	+	962.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14800.0	NM_009943	12862.0	Mm.43824	NM_009943	ENSMUSG00000030785	Cox6a2	CoxVIaH|VIaH	cytochrome c oxidase subunit VIa polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-87826555-4	chr4	87826064	87827064	+	962.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027326, intron 5 of 10)	intron (NM_027326, intron 5 of 10)	-20241.0	NM_029931	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-156108859-10	chr4	156108380	156109380	+	962.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1118.0	NM_145557	230996.0	Mm.318925	NM_145557	ENSMUSG00000059939	9430015G10Rik	-	RIKEN cDNA 9430015G10 gene	protein-coding	16.5	57.0	47.5	17.0	54.0	41.0
Merged-chr16-18443636-3	chr16	18443118	18444118	+	962.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001353143, intron 8 of 16)	intron (NM_001353143, intron 8 of 16)	-16902.0	NM_001111062	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54651232-4	chr14	54650723	54651723	+	962.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_038053, exon 2 of 6)	non-coding (NR_038053, exon 2 of 6)	712.0	NR_038053	75913.0	Mm.474799	NR_038053		4930579G18Rik	-	RIKEN cDNA 4930579G18 gene	ncRNA	0.5	4.0	19.0	1.0	25.0	0.0
Merged-chr10-40437375-3	chr10	40436876	40437876	+	962.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291817, intron 4 of 11)	L1_Mus2|LINE|L1	88068.0	NM_001291816	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55430771-4	chr13	55430282	55431282	+	962.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-3978.0	NM_021489	58992.0	Mm.42224	NM_021489	ENSMUSG00000021492	F12	FXII|HAF	coagulation factor XII (Hageman factor)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53799494-3	chr4	53798984	53799984	+	962.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19779.0	NM_009317	21350.0	Mm.56955	NM_009317	ENSMUSG00000028417	Tal2	bHLHa19	T cell acute lymphocytic leukemia 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-36700067-4	chr13	36699551	36700551	+	962.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	34426.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	0.0	5.0	1.5	3.5	0.5	1.5
Merged-chr10-80245860-4	chr10	80245374	80246374	+	962.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023431)	TTS (NM_023431)	-3578.0	NM_029272	75406.0	Mm.28712	NM_029272	ENSMUSG00000020153	Ndufs7	1010001M04Rik	NADH dehydrogenase (ubiquinone) Fe-S protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-81579930-4	chr17	81579442	81580442	+	962.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	158445.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31613920-4	chr15	31613402	31614402	+	962.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356313, intron 5 of 5)	intron (NM_001356313, intron 5 of 5)	11786.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50931611-4	chr11	50931063	50932063	+	962.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013744)	promoter-TSS (NM_013744)	72.0	NM_013744	27274.0	Mm.74670	NM_013744	ENSMUSG00000020335	Zfp354b	Kid2|Tcf17l1|Znf354b	zinc finger protein 354B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-64876786-4	chr14	64876274	64877274	+	962.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 4 of 9)	Lx5c|LINE|L1	73083.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-82326660-4	chr12	82326163	82327163	+	962.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 4 of 23)	intron (NM_001167983, intron 4 of 23)	15314.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49781818-4	chr16	49781325	49782325	+	962.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73829.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122459803-4	chr7	122459346	122460346	+	962.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 5 of 16)	intron (NM_001316672, intron 5 of 16)	170721.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-62821739-4	chr5	62821227	62822227	+	962.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 2 of 8)	intron (NM_001170705, intron 2 of 8)	7904.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	14.5	40.5	20.0	12.5	40.0	23.0
Merged-chr1-191119104-4	chr1	191118578	191119578	+	962.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20664.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	60.0	126.0	92.0	151.5	307.5	207.0
Merged-chr17-64723400-4	chr17	64722905	64723905	+	962.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 16 of 21)	Lx8|LINE|L1	-43706.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64052237-4	chr15	64051720	64052720	+	962.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	7544.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29380725-6	chr17	29380186	29381186	+	962.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	19772.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	68.5	138.5	114.0	92.5	214.0	144.0
Merged-chr14-7964665-4	chr14	7964169	7965169	+	962.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007870)	TTS (NM_007870)	29513.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45528535-2	chr7	45528036	45529036	+	962.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_148927, intron 1 of 19)	intron (NM_148927, intron 1 of 19)	2206.0	NM_148927	69217.0	Mm.274158	NM_148927	ENSMUSG00000040428	Plekha4	2410005C22Rik|C88169|Pepp1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31391945-2	chr3	31391445	31392445	+	962.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-81626.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27766249-4	chr3	27765746	27766746	+	962.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55794.0	NM_173182	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-95646231-3	chr1	95645711	95646711	+	962.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159745, intron 3 of 3)	intron (NM_001159745, intron 3 of 3)	21383.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51433202-4	chr10	51432726	51433726	+	962.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47386.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-83947673-4	chr3	83947179	83948179	+	962.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172681, intron 7 of 34)	intron (NM_172681, intron 7 of 34)	92482.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-57611775-4	chr19	57611305	57612305	+	962.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181415, intron 1 of 28)	CpG	771.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	0.0	6.5	8.0	2.5	14.5	4.0
Merged-chr5-24604924-4	chr5	24604425	24605425	+	962.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2923.0	NM_025891	66993.0	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-40910961-4	chr8	40910468	40911468	+	962.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007514, intron 7 of 11)	intron (NM_007514, intron 7 of 11)	-15265.0	NM_026840	68797.0	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.0	6.5	0.0	3.0	1.5	0.0
Merged-chr14-26455077-4	chr14	26454583	26455583	+	962.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 12 of 22)	intron (NM_001310445, intron 12 of 22)	79541.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30967705-7	chr2	30967200	30968200	+	962.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144884, exon 1 of 5)	exon (NM_144884, exon 1 of 5)	218.0	NM_144884	30931.0	Mm.154994	NM_144884	ENSMUSG00000026849	Tor1a	DQ2|Dyt1|torsinA	torsin family 1, member A (torsin A)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28907420-4	chr7	28906910	28907910	+	962.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021895, intron 8 of 20)	intron (NM_021895, intron 8 of 20)	25754.0	NM_001110807	60594.0	Mm.476990	NM_021894	ENSMUSG00000054083	Capn12	CANP 12	calpain 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20712384-4	chr11	20711873	20712873	+	962.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181411, intron 2 of 8)	intron (NM_181411, intron 2 of 8)	29183.0	NM_001290545	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	25.0	60.0	24.5	13.0	52.0	38.0
Merged-chr9-78110325-4	chr9	78109834	78110834	+	962.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163780, intron 1 of 13)	intron (NM_001163780, intron 1 of 13)	1142.0	NM_001163780	56542.0	Mm.288719	NM_019987	ENSMUSG00000009828	Ick	2210420N10Rik|AI848300|Mrk	intestinal cell kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60315983-3	chr2	60315490	60316490	+	962.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013825, intron 27 of 34)	intron (NM_013825, intron 27 of 34)	-31506.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105269783-4	chr8	105269288	105270288	+	962.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256044)	promoter-TSS (NM_001256044)	-13.0	NM_011939	26386.0	Mm.89204	NM_011939	ENSMUSG00000033249	Hsf4	HSF 4|HSTF 4|HSTF4|ldis1|mHSF4	heat shock transcription factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-3259304-4	chr15	3258793	3259793	+	962.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-11474.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-41587789-4	chr3	41587279	41588279	+	962.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130184, intron 2 of 10)	intron (NM_001130184, intron 2 of 10)	22899.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	7.5	18.5	19.0	14.5	12.0	16.5
Merged-chr18-46621682-3	chr18	46621173	46622173	+	962.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23969.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54303245-6	chr13	54302721	54303721	+	962.522217	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-68128.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-35749363-4	chr13	35748846	35749846	+	962.520874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001123386, intron 1 of 6)	Lx9|LINE|L1	7944.0	NM_001123386	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128704505-8	chr2	128703965	128704965	+	962.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	B2_Mm2|SINE|B2	5550.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-151979953-7	chr2	151979449	151980449	+	962.507935	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146127, intron 1 of 1)	CpG	270.0	NM_146127	73847.0	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80703317-2	chr10	80702817	80703817	+	962.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027829, intron 3 of 9)	intron (NM_027829, intron 3 of 9)	624.0	NM_027829	71564.0	Mm.35802	NM_027829	ENSMUSG00000055862	Izumo4	9030607L17Rik|AI550407	IZUMO family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60674481-4	chr13	60673956	60674956	+	962.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	72245.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	86.0	199.0	129.0	91.5	172.5	120.0
Merged-chr6-149132527-4	chr6	149132035	149133035	+	962.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8978.0	NM_001252096	320204.0	Mm.274099	NM_177101	ENSMUSG00000039958	Etfbkmt	4833442J19Rik|AI256744|ETFB-KMT|Mettl20	electron transfer flavoprotein beta subunit lysine methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94408868-4	chr10	94408367	94409367	+	962.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	96918.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112589127-3	chr12	112588630	112589630	+	962.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198411, intron 1 of 22)	intron (NM_198411, intron 1 of 22)	346.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147564375-4	chr5	147563864	147564864	+	962.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010228, exon 30 of 30)	exon (NM_010228, exon 30 of 30)	134208.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	4.5	8.5	6.0	1.5	4.5	2.0
Merged-chr3-106484142-3	chr3	106483638	106484638	+	962.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033207, intron 1 of 1)	intron (NR_033207, intron 1 of 1)	1688.0	NM_001278941	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	18.0	79.5	24.0	39.5	64.0	39.0
Merged-chr6-72151049-2	chr6	72150549	72151549	+	962.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 6 of 6)	GA-rich|Low_complexity|Low_complexity	-27852.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-76001377-3	chr3	76000871	76001871	+	962.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-44422.0	NM_001291069	73124.0	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72151949-2	chr6	72151449	72152449	+	962.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 6 of 6)	intron (NM_001035228, intron 6 of 6)	-28752.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-108005312-2	chr5	108004812	108005812	+	962.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18235.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44733703-2	chr9	44733203	44734203	+	962.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153537, intron 1 of 21)	CpG	1495.0	NM_153537	102693.0	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-16805626-2	chr12	16805126	16806126	+	962.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-4740.0	NM_015764	268527.0	Mm.428062	NM_015764	ENSMUSG00000036523	Greb1	5730583K22Rik|9130004E13|AF180470|AU023194|mKIAA0575	gene regulated by estrogen in breast cancer protein	protein-coding	6.0	0.0	3.5	0.0	1.0	0.0
Merged-chr8-41018660-2	chr8	41018160	41019160	+	962.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_015457, intron 1 of 2)	intron (NR_015457, intron 1 of 2)	1192.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	38.5	71.5	43.5	8.0	21.0	14.0
Merged-chr18-34933357-2	chr18	34932857	34933857	+	962.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	-1354.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152809572-2	chr1	152809072	152810072	+	962.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 2 of 15)	MTA_Mm|LTR|ERVL-MaLR	9419.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88174102-2	chr3	88173602	88174602	+	962.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045997, intron 2 of 2)	intron (NR_045997, intron 2 of 2)	3683.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115508129-7	chr5	115507572	115508572	+	962.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	1396.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	32.5	140.0	120.5	126.5	333.0	243.0
Merged-chr4-88450288-4	chr4	88449759	88450759	+	962.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11333.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	0.0	6.5	7.0	2.0	2.5	0.5
Merged-chr13-92030889-4	chr13	92030390	92031390	+	962.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42848.0	NM_009027	19418.0	Mm.248630	NM_009027	ENSMUSG00000021708	Rasgrf2	6330417G04Rik|AW048350|Grf2|Ras-GRF2	RAS protein-specific guanine nucleotide-releasing factor 2	protein-coding	2.5	14.5	1.0	10.0	3.5	7.5
Merged-chr6-112759084-4	chr6	112758582	112759582	+	962.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080448, intron 11 of 21)	intron (NM_080448, intron 11 of 21)	-62412.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90198075-4	chr9	90197553	90198553	+	962.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003911, intron 23 of 23)	intron (NM_001003911, intron 23 of 23)	35075.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128455481-4	chr10	128454980	128455980	+	962.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3200.0	NR_106183	102465894.0		NR_106183	ENSMUSG00000098957	Mir8105	Gm27346|mmu-mir-8105	microRNA 8105	ncRNA	3.0	3.0	10.5	3.0	1.0	6.5
Merged-chr5-135705528-4	chr5	135705045	135706045	+	962.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 1 of 15)	B4A|SINE|B4	16400.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37890350-4	chr13	37889848	37890848	+	962.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 2 of 9)	intron (NM_001039188, intron 2 of 9)	1477.0	NM_001177869	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160157291-4	chr2	160156767	160157767	+	962.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	140614.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-10025973-4	chr3	10025475	10026475	+	962.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13390.0	NM_001272098	16592.0	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	16.5	38.5	15.0	10.5	9.0	6.0
Merged-chr13-22044356-4	chr13	22043865	22044865	+	962.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178198)	TTS (NM_178198)	1135.0	NM_178198	319183.0	Mm.371766	NM_178198	ENSMUSG00000069300	Hist1h2bj	-	histone cluster 1, H2bj	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr2-33908568-3	chr2	33908068	33909068	+	962.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20622.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47883305-3	chr17	47882816	47883816	+	962.4111330000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028767, intron 3 of 16)	intron (NM_028767, intron 3 of 16)	41316.0	NM_028767	74123.0	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	0.0	0.0	0.0	0.0	3.5	0.5
Merged-chr3-31414138-4	chr3	31413726	31414726	+	962.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103907.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115164592-4	chr11	115164113	115165113	+	962.3875119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012030, intron 1 of 5)	intron (NM_012030, intron 1 of 5)	1272.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	20.5	44.0	19.0	3.5	23.0	15.0
Merged-chr4-43010280-4	chr4	43009751	43010751	+	962.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163233)	promoter-TSS (NM_001163233)	50.0	NM_001163233	60534.0	Mm.23122	NM_053081	ENSMUSG00000028453	Fancg	AU041407|Xrcc9	Fanconi anemia, complementation group G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-8861134-4	chr13	8860628	8861628	+	962.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172445, exon 2 of 14)	exon (NM_172445, exon 2 of 14)	9916.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51984442-4	chr14	51983936	51984936	+	962.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198249)	promoter-TSS (NM_198249)	-397.0	NM_001145921	268739.0	Mm.9239	NM_198249	ENSMUSG00000004562	Arhgef40	E130112L23Rik|Gm669|Solo	Rho guanine nucleotide exchange factor (GEF) 40	protein-coding	5.5	2.0	1.0	3.0	0.0	0.5
Merged-chr17-29362125-4	chr17	29361627	29362627	+	962.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013710, intron 1 of 15)	intron (NM_013710, intron 1 of 15)	1213.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	2.5	4.0	2.5	7.0	20.5	8.0
Merged-chr7-25280842-2	chr7	25280342	25281342	+	962.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302811, intron 2 of 20)	intron (NM_001302811, intron 2 of 20)	-1337.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79154190-3	chr3	79153690	79154690	+	962.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-8315.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	23.0	39.0	30.5	17.5	35.5	13.5
Merged-chr13-91599796-3	chr13	91599284	91600284	+	962.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 4 of 15)	MTC|LTR|ERVL-MaLR	138687.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	0.0	0.0	2.5	0.0	0.0	1.0
Merged-chr5-74618690-4	chr5	74618185	74619185	+	962.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359074, intron 5 of 10)	intron (NM_001359074, intron 5 of 10)	59187.0	NM_001159580	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	1.5	12.0	0.5	4.5	11.5	7.0
Merged-chr5-100608086-4	chr5	100607583	100608583	+	962.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35878.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	10.5	20.0	7.5	6.0	20.0	17.0
Merged-chr10-42501421-2	chr10	42500921	42501921	+	962.3333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017472)	promoter-TSS (NM_017472)	-633.0	NM_017472	54198.0	Mm.277870	NM_017472	ENSMUSG00000019804	Snx3	SDP3	sorting nexin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25530559-4	chr14	25530069	25531069	+	962.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 2 of 23)	intron (NM_183208, intron 2 of 23)	-3870.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17612447-3	chr6	17611945	17612945	+	962.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-24565.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-64627346-4	chr14	64626854	64627854	+	962.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-25177.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	19.5	7.5	8.5	3.0	2.5	9.5
Merged-chr13-52588023-4	chr13	52587512	52588512	+	962.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198977, intron 1 of 13)	MLT1A1|LTR|ERVL-MaLR	4575.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75609903-7	chr7	75609392	75610392	+	962.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029332, exon 7 of 37)	exon (NM_029332, exon 7 of 37)	154358.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	5.0	7.5	2.0	42.0	34.0	24.5
Merged-chr17-65950753-3	chr17	65950253	65951253	+	962.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023053, intron 1 of 4)	CpG	434.0	NM_023053	65960.0	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	0.0	0.0	2.0	1.5	2.0	2.0
Merged-chr13-9255241-3	chr13	9254710	9255710	+	962.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-21315.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108692679-6	chr9	108692288	108693288	+	962.305542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008924, intron 1 of 10)	CpG	645.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56265119-6	chr17	56264549	56265549	+	962.305542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8256.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69058434-4	chr11	69057830	69058830	+	962.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1445.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	1.5	4.5	6.5	0.0	1.0	1.5
Merged-chr6-26454548-4	chr6	26454056	26455056	+	962.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	523130.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87083878-4	chr17	87083354	87084354	+	962.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23825.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	10.0	22.0	28.0	9.0	21.5	25.0
Merged-chr11-29647954-4	chr11	29647440	29648440	+	962.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44958.0	NM_194053	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	2.5	32.5	12.0	1.0	1.5	5.5
Merged-chr19-44416403-4	chr19	44415902	44416902	+	962.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8693.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	1.5	9.0	1.0	2.0	1.0	0.0
Merged-chr1-64621460-4	chr1	64620945	64621945	+	962.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger5b|DNA|TcMar-Tigger	-4277.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-106652063-4	chr7	106651567	106652567	+	962.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7422.0	NM_001277182	434223.0	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	83.0	328.5	159.5	62.5	176.5	53.5
Merged-chr3-27081511-5	chr3	27081029	27082029	+	962.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4A|LINE|L1	72325.0	NM_007900	13605.0	Mm.261453	NM_007900	ENSMUSG00000027699	Ect2	AI528536	ect2 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57803315-4	chr6	57802809	57803809	+	962.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 1 of 4)	Lx8|LINE|L1	21816.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78442071-2	chr9	78441571	78442571	+	962.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_125721, intron 1 of 4)	intron (NR_125721, intron 1 of 4)	1166.0	NR_125721	214763.0	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-58202823-4	chr19	58202330	58203330	+	962.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93374.0	NR_040449	791347.0	Mm.452208	NR_040449		Gm10007	-	predicted gene 10007	ncRNA	3.0	0.0	4.5	0.0	0.0	1.0
Merged-chr18-30160452-3	chr18	30159937	30160937	+	962.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112428.0	NM_181414	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	0.5	1.5	9.0	0.5	1.5	9.0
Merged-chr15-100762113-4	chr15	100761606	100762606	+	962.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021530, intron 1 of 24)	CpG	359.0	NM_021530	59033.0	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	16.0	1.0	1.5	0.0	8.0	1.5
Merged-chr2-128871867-4	chr2	128871325	128872325	+	962.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024237, intron 1 of 7)	intron (NM_024237, intron 1 of 7)	7893.0	NM_024237	70370.0	Mm.5107	NM_024237	ENSMUSG00000027386	Fbln7	1600015H20Rik|AI464334|TM14	fibulin 7	protein-coding	2.0	0.0	4.5	3.5	5.0	6.5
Merged-chr9-86478541-4	chr9	86478014	86479014	+	962.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177208, intron 1 of 38)	intron (NM_177208, intron 1 of 38)	11360.0	NM_177208	320615.0	Mm.245500	NM_177208	ENSMUSG00000034973	Dopey1	B130005I07Rik|BC035275|C130028L17|D9Ertd809e	dopey family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49181828-2	chr13	49181328	49182328	+	962.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5719.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30405965-4	chr14	30405476	30406476	+	962.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028981, intron 1 of 46)	intron (NM_028981, intron 1 of 46)	-52060.0	NR_131095	77710.0	Mm.410773	NR_131095		4831407H17Rik	-	RIKEN cDNA 4831407H17 gene	ncRNA	0.0	4.0	0.5	0.0	11.0	0.0
Merged-chr6-148436607-4	chr6	148436124	148437124	+	962.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198967, intron 1 of 19)	intron (NM_198967, intron 1 of 19)	7728.0	NM_198967	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	1.0	11.5	3.0	22.0	11.0	13.0
Merged-chr10-13835874-3	chr10	13835376	13836376	+	962.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025446, intron 1 of 5)	intron (NM_025446, intron 1 of 5)	33081.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	4.0	9.0	2.5	4.0	8.5	11.5
Merged-chr4-85695388-3	chr4	85694887	85695887	+	962.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie5|DNA|hAT-Charlie	-358528.0	NM_029967	77739.0	Mm.331690	NM_029967	ENSMUSG00000066113	Adamtsl1	5930437A14Rik|6720426B09Rik|ADAMTSL-1	ADAMTS-like 1	protein-coding	2.5	0.0	2.0	3.0	4.0	2.0
Merged-chr9-107575090-3	chr9	107574589	107575589	+	962.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1838.0	NM_008317	15586.0	Mm.475658	NM_008317	ENSMUSG00000010051	Hyal1	Hya1|Hyal-1	hyaluronoglucosaminidase 1	protein-coding	17.5	46.5	23.5	11.5	16.0	27.0
Merged-chr3-144698589-3	chr3	144698082	144699082	+	962.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019464, intron 5 of 8)	intron (NM_019464, intron 5 of 8)	21753.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84363406-4	chr1	84362898	84363898	+	962.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78753.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-121280373-4	chr7	121279879	121280879	+	962.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-111917.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84705620-4	chr2	84705129	84706129	+	962.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144887, intron 2 of 11)	intron (NM_144887, intron 2 of 11)	9535.0	NM_144887	228136.0	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-20348390-4	chr3	20347886	20348886	+	962.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175086, intron 1 of 1)	MusHAL1|LINE|L1	18791.0	NM_175086	11608.0	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-89747668-4	chr10	89747107	89748107	+	962.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029166, intron 1 of 20)	intron (NM_029166, intron 1 of 20)	2616.0	NM_029166	75089.0	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125084594-4	chr6	125084100	125085100	+	962.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11381.0	NM_001346610	107932.0	Mm.333388	NM_145979	ENSMUSG00000063870	Chd4	9530019N15Rik|AA617397|BC005710|D6Ertd380e|Mi-2beta|mKIAA4075	chromodomain helicase DNA binding protein 4	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr18-6135144-3	chr18	6134637	6135637	+	962.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039692, intron 1 of 18)	intron (NM_001039692, intron 1 of 18)	961.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	38.0	120.5	83.5	19.5	107.0	92.0
Merged-chr7-25278430-4	chr7	25277900	25278900	+	962.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302811, intron 2 of 20)	CpG	-3779.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-15202413-4	chr18	15201919	15202919	+	962.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50973.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114131632-4	chr5	114131129	114132129	+	962.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040691, intron 2 of 6)	CpG	473.0	NM_011677	22256.0	Mm.1393	NM_011677	ENSMUSG00000029591	Ung	UNG1|UNG2	uracil DNA glycosylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-110733487-4	chr10	110733002	110734002	+	962.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11937.0	NM_001358560	52679.0	Mm.11747	NM_178609	ENSMUSG00000020185	E2f7	A630014C11Rik|D10Ertd739e|E2F-7	E2F transcription factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99723365-4	chr15	99722870	99723870	+	962.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010271, exon 8 of 8)	3' UTR (NM_010271, exon 8 of 8)	1104.0	NR_155353	102638434.0	Mm.364438	NR_155353		Gm16537	-	predicted gene 16537	ncRNA	11.0	37.5	18.0	11.5	57.0	22.0
Merged-chr8-128453702-4	chr8	128453189	128454189	+	962.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358959, intron 6 of 16)	intron (NM_001358959, intron 6 of 16)	94448.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	19.5	31.0	21.5	15.0	11.5	24.0
Merged-chr15-39933610-4	chr15	39933103	39934103	+	962.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172814, intron 1 of 6)	intron (NM_172814, intron 1 of 6)	10391.0	NM_001347036	239393.0	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-71040598-4	chr12	71040094	71041094	+	962.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081195, intron 8 of 23)	PB1|SINE|Alu	24627.0	NM_001081195	238247.0	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56773701-3	chr19	56773237	56774237	+	962.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	39946.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101070566-4	chr7	101070060	101071060	+	962.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38215.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	16.0	25.0	13.0	19.5	24.0	15.0
Merged-chr10-70213866-4	chr10	70213389	70214389	+	962.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304739, intron 1 of 2)	intron (NM_001304739, intron 1 of 2)	9225.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90107141-4	chr9	90106638	90107638	+	962.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039147, intron 3 of 12)	intron (NM_001039147, intron 3 of 12)	7682.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	9.0	11.5	5.0	0.0	6.5	0.5
Merged-chr15-59823338-3	chr15	59822843	59823843	+	962.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28384.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.0	0.5	0.0	0.0	3.0	0.0
Merged-chr12-12301358-4	chr12	12300848	12301848	+	962.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	Lx8|LINE|L1	39209.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	22.5	101.0	57.0	41.5	67.0	45.0
Merged-chr12-104836405-4	chr12	104835916	104836916	+	962.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040682, intron 1 of 12)	Lx7|LINE|L1	28660.0	NR_104436	94040.0	Mm.244078	NM_053155	ENSMUSG00000021097	Clmn	9330188N17Rik|AI428889|AI788815|mKIAA1188	calmin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44587482-4	chr9	44586993	44587993	+	962.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17399.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-192981955-2	chr1	192981428	192982428	+	962.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301370, intron 3 of 8)	intron (NM_001301370, intron 3 of 8)	53847.0	NM_001301370	329324.0	Mm.76710	NM_181546	ENSMUSG00000016200	Syt14	B230320I09Rik|sytXIV	synaptotagmin XIV	protein-coding	9.0	6.5	6.0	9.5	4.5	5.0
Merged-chr19-5693316-2	chr19	5692830	5693830	+	962.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_022012, intron 3 of 11)	intron (NM_022012, intron 3 of 11)	4199.0	NM_022012	26403.0	Mm.185026	NM_022012	ENSMUSG00000004054	Map3k11	2610017K16Rik|Mlk3|PTK1|SPRK	mitogen-activated protein kinase kinase kinase 11	protein-coding	17.5	9.0	21.0	1.0	48.0	10.5
Merged-chr19-25672324-4	chr19	25671811	25672811	+	962.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045347)	promoter-TSS (NR_045347)	-72.0	NR_045347	100503074.0	Mm.140012	NR_045347	ENSMUSG00000101089	2610016A17Rik	2610317C19Rik	RIKEN cDNA 2610016A17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-64886673-4	chr18	64886179	64887179	+	962.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1077.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	3.5	5.5	4.5	2.0	5.0	1.5
Merged-chr5-135909163-4	chr5	135908637	135909637	+	962.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018871, exon 2 of 2)	3' UTR (NM_018871, exon 2 of 2)	21218.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83566236-4	chr7	83565722	83566722	+	962.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18709.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	0.0	8.5	4.0	0.0	7.5	3.5
Merged-chr4-140952450-4	chr4	140951927	140952927	+	962.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008812, exon 16 of 16)	3' UTR (NM_008812, exon 16 of 16)	5475.0	NR_045911	100126227.0	Mm.404073	NR_045911	ENSMUSG00000087698	Gm13031	-	predicted gene 13031	ncRNA	7.5	15.0	10.5	0.0	1.5	1.5
Merged-chr13-37854231-10	chr13	37853709	37854709	+	962.1166380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	26816.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-74040158-3	chr13	74039662	74040662	+	962.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028959, exon 11 of 12)	exon (NM_028959, exon 11 of 12)	22123.0	NM_028959	74470.0	Mm.73234	NM_028959	ENSMUSG00000021572	Cep72	2610029E11Rik|4933440J22Rik	centrosomal protein 72	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21172811-3	chr13	21172309	21173309	+	962.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7122.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	2.5	2.5	0.0	2.5	2.5	0.0
Merged-chr1-88631673-4	chr1	88631167	88632167	+	962.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70524.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83735375-2	chr8	83734922	83735922	+	962.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 1 of 19)	RLTR11C_MM|LTR|ERVK	5889.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	10.0	11.0	13.5	7.5	6.5	7.5
Merged-chr7-31158755-4	chr7	31158268	31159268	+	962.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-3590.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79852939-4	chr3	79852438	79853438	+	962.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-10276.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	1.0	4.0	11.0	4.5	9.0	9.0
Merged-chr8-24438969-4	chr8	24438467	24439467	+	962.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026931)	promoter-TSS (NM_026931)	-21.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120454259-4	chr6	120453772	120454772	+	962.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8925.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	19.0	26.0	42.0	29.0	42.0	50.5
Merged-chr17-87602376-4	chr17	87601849	87602849	+	962.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33630.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	39.0	53.0	47.5	8.0	38.0	31.5
Merged-chr11-70805238-11	chr11	70804757	70805757	+	962.0575560000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045526, intron 1 of 4)	intron (NM_001045526, intron 1 of 4)	7304.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-7100744-4	chr1	7100246	7101246	+	962.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183028, intron 1 of 5)	intron (NM_183028, intron 1 of 5)	11826.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-80655377-4	chr1	80654890	80655890	+	962.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	9962.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52191994-4	chr6	52191541	52192541	+	962.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008265)	promoter-TSS (NM_008265)	-338.0	NM_008265	15401.0	Mm.439647	NM_008265	ENSMUSG00000000942	Hoxa4	AV206827|Hox-1.4	homeobox A4	protein-coding	0.0	0.0	0.5	0.0	1.0	0.0
Merged-chr3-105001571-4	chr3	105001062	105002062	+	962.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163332)	TTS (NM_001163332)	-39853.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3190110-9	chr11	3189620	3190620	+	962.0184939999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 1 of 32)	RLTR33|LTR|ERVK	3343.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-33664650-3	chr8	33664142	33665142	+	962.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010344, intron 1 of 12)	RLTR6_Mm|LTR|ERV1	11404.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	8.5	17.0	19.0	2.0	12.5	10.5
Merged-chr2-164798761-3	chr2	164798247	164799247	+	962.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133240, intron 3 of 5)	B2_Mm2|SINE|B2	6134.0	NM_133240	170789.0	Mm.277878	NM_133240	ENSMUSG00000017307	Acot8	PTE-2|Pte1	acyl-CoA thioesterase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125393861-4	chr7	125393429	125394429	+	962.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25068.0	NM_001145759	75861.0	Mm.349600	NM_001145759		4930571K23Rik	AI428146	RIKEN cDNA 4930571K23 gene	protein-coding	1.0	5.5	0.0	0.0	0.0	0.5
Merged-chr8-70606731-3	chr8	70606252	70607252	+	962.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133772, intron 1 of 16)	intron (NM_133772, intron 1 of 16)	1562.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	2.5	7.5	4.0	7.0	16.0	5.0
Merged-chr4-150472718-3	chr4	150472220	150473220	+	962.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 6 of 22)	intron (NM_001085492, intron 6 of 22)	179454.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	3.0	0.0	1.0	3.0	0.0	1.0
Merged-chr8-119827335-8	chr8	119826839	119827839	+	962.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	13240.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45588414-2	chr7	45587914	45588914	+	962.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243052, intron 9 of 10)	intron (NM_001243052, intron 9 of 10)	-13238.0	NR_038165	71661.0	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79048894-4	chr2	79048398	79049398	+	962.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	179220.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77547259-2	chr10	77546759	77547759	+	962.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008404, exon 5 of 16)	exon (NM_008404, exon 5 of 16)	16911.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-51096026-2	chr2	51095526	51096526	+	962.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53085.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-42790534-1	chr18	42790034	42791034	+	962.0	f0_balb.idr	intron (NM_028392, intron 1 of 8)	intron (NM_028392, intron 1 of 8)	108972.0	NR_073583	72930.0	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr18-38993579-3	chr18	38993060	38994060	+	962.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175164, exon 1 of 23)	exon (NM_175164, exon 1 of 23)	415.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36067212-2	chr1	36066712	36067712	+	962.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1188.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11690504-2	chr2	11690004	11691004	+	962.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008367, exon 8 of 8)	3' UTR (NM_008367, exon 8 of 8)	-14789.0	NM_001271498	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25626919-2	chr2	25626419	25627419	+	962.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007995, intron 4 of 9)	intron (NM_007995, intron 4 of 9)	1055.0	NM_007995	14133.0	Mm.10510	NM_007995	ENSMUSG00000026938	Fcna	Fcn1	ficolin A	protein-coding	12.5	24.5	20.5	12.0	22.5	19.0
Merged-chr6-134791893-4	chr6	134791407	134792407	+	962.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151454)	promoter-TSS (NR_151454)	-453.0	NR_151454	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	117.0	291.0	208.5	107.0	222.5	187.0
Merged-chr16-17656605-2	chr16	17656105	17657105	+	962.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285886, intron 8 of 16)	intron (NM_001285886, intron 8 of 16)	10135.0	NM_001166164	72315.0	Mm.297777	NM_001166164	ENSMUSG00000041617	Ccdc74a	2310015A05Rik	coiled-coil domain containing 74A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-72961069-4	chr17	72960566	72961566	+	962.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	42761.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0.0	1.0	0.0	0.0	0.5	0.0
Merged-chr6-108168124-3	chr6	108167627	108168627	+	962.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145937, intron 3 of 8)	ORR1E|LTR|ERVL-MaLR	17456.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	4.5	3.0	4.5	8.5	9.0	14.0
Merged-chr12-110936492-2	chr12	110935992	110936992	+	962.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175336, intron 11 of 20)	intron (NM_175336, intron 11 of 20)	42126.0	NM_001361917	74251.0	Mm.250989	NM_175207	ENSMUSG00000037904	Ankrd9	2500003O20Rik	ankyrin repeat domain 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22286538-3	chr11	22286012	22287012	+	962.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252515, intron 1 of 24)	intron (NM_001252515, intron 1 of 24)	283.0	NM_153078	216565.0	Mm.491265	NM_153078	ENSMUSG00000042302	Ehbp1	AF424697|Flj21950|NACSIN	EH domain binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-136428015-2	chr3	136427515	136428515	+	962.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21334.0	NR_040592	70055.0	Mm.261063	NR_040592	ENSMUSG00000099508	1700030L20Rik	-	RIKEN cDNA 1700030L20 gene	ncRNA	0.0	0.5	0.0	2.0	1.0	4.0
Merged-chr13-62855661-2	chr13	62855161	62856161	+	962.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007994, intron 1 of 6)	MTD|LTR|ERVL-MaLR	2709.0	NM_007994	14120.0	Mm.391871	NM_007994	ENSMUSG00000021456	Fbp2	Fbp-1|Fbp1|Rae-30	fructose bisphosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102434118-2	chr12	102433618	102434618	+	962.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	intron (NM_011175, intron 1 of 13)	5695.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	12.0	33.0	34.0	12.0	35.5	35.5
Merged-chr4-133187026-1	chr4	133186526	133187526	+	962.0	f1_c57bl6.idr	intron (NM_153423, intron 4 of 8)	B3A|SINE|B2	-8629.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	4.5	15.0	2.5	0.0	17.0	3.0
Merged-chr6-40576007-4	chr6	40575519	40576519	+	962.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021364, exon 6 of 6)	3' UTR (NM_021364, exon 6 of 6)	4631.0	NM_146383	258381.0	Mm.377469	NM_146383	ENSMUSG00000045514	Olfr460	MOR120-2	olfactory receptor 460	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103339155-2	chr15	103338655	103339655	+	962.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013866, intron 1 of 7)	intron (NM_013866, intron 1 of 7)	931.0	NM_013866	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64882802-2	chr5	64882302	64883302	+	962.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	49897.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90708620-2	chr3	90708066	90709066	+	962.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12845.0	NM_001281852	20202.0	Mm.2128	NM_009114	ENSMUSG00000056071	S100a9	60B8Ag|AW546964|BEE22|Cagb|GAGB|L1Ag|MRP14|p14	S100 calcium binding protein A9 (calgranulin B)	protein-coding	5.0	0.0	2.5	6.5	0.0	0.0
Merged-chr3-88464604-4	chr3	88464111	88465111	+	962.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-3429.0	NM_001163489	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99244331-3	chr5	99243807	99244807	+	962.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 1 of 13)	B1_Mur3|SINE|Alu	8620.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36827879-1	chr16	36827379	36828379	+	962.0	f0_balb.idr	promoter-TSS (NM_177128)	promoter-TSS (NM_177128)	380.0	NM_001113401	106389.0	Mm.432078	NM_134111	ENSMUSG00000022838	Eaf2	AW048865|FESTA-L|FESTA-S|Festa|Traits|U19	ELL associated factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-31841327-1	chr9	31840827	31841827	+	962.0	f0_balb.idr	Intergenic	Intergenic	71958.0	NM_013800	12023.0	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20537563-5	chr16	20537146	20538146	+	962.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009679, exon 2 of 11)	5' UTR (NM_009679, exon 2 of 11)	2166.0	NM_009679	11773.0	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91845568-2	chr12	91845068	91846068	+	962.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039089, intron 1 of 20)	intron (NM_001039089, intron 1 of 20)	3589.0	NM_001039089	20338.0	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106658209-2	chr11	106657709	106658709	+	962.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001032378, intron 13 of 13)	intron (NM_001032378, intron 13 of 13)	-45279.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119110294-2	chr4	119109770	119110770	+	962.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011400, intron 1 of 9)	intron (NM_011400, intron 1 of 9)	1525.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	5.5	5.0	7.0	0.0	4.5	2.5
Merged-chr11-63925481-4	chr11	63924979	63925979	+	961.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3195.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	0.0	0.0	0.5	3.0	0.0	1.0
Merged-chr10-121351332-4	chr10	121350797	121351797	+	961.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001361015, exon 1 of 13)	exon (NM_001361015, exon 1 of 13)	347.0	NM_001361015	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	2.0	0.0	3.0	2.0	0.0	2.5
Merged-chr1-156673744-4	chr1	156673234	156674234	+	961.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023141, intron 1 of 5)	intron (NM_023141, intron 1 of 5)	605.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	112.5	133.5	146.0	103.5	290.0	189.0
Merged-chr11-103354226-4	chr11	103353729	103354729	+	961.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205236, intron 3 of 17)	intron (NM_001205236, intron 3 of 17)	9463.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	7.5	31.5	5.0	7.0	7.0	14.0
Merged-chr12-84389098-4	chr12	84388617	84389617	+	961.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001026214, intron 6 of 15)	intron (NM_001026214, intron 6 of 15)	11817.0	NM_001286058	12499.0	Mm.10211	NM_007647	ENSMUSG00000021236	Entpd5	AI196558|AI987697|Cd39l4|ER-UDPase|NTPDase-5|NTPDase5|Pcph|mNTPase	ectonucleoside triphosphate diphosphohydrolase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-119444327-4	chr6	119443830	119444830	+	961.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009525, intron 3 of 4)	intron (NM_009525, intron 3 of 4)	5056.0	NM_001271757	22419.0	Mm.321818	NM_009525	ENSMUSG00000030170	Wnt5b	AW545702|Wnt-5b	wingless-type MMTV integration site family, member 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-81926071-4	chr3	81925572	81926572	+	961.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6529.0	NM_177662	229445.0	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|AI118514	cathepsin O	protein-coding	2.5	1.0	3.0	2.5	2.5	3.0
Merged-chr16-89844763-4	chr16	89844261	89845261	+	961.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 12 of 27)	intron (NM_009384, intron 12 of 27)	-26409.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79566846-4	chr3	79566354	79567354	+	961.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	825.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145187626-4	chr6	145187078	145188078	+	961.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177222, intron 9 of 15)	MTEa|LTR|ERVL-MaLR	23392.0	NM_177222	320662.0	Mm.207779	NM_177222	ENSMUSG00000043541	Casc1	A230084G12Rik|Las1	cancer susceptibility candidate 1	protein-coding	8.0	12.5	7.0	2.5	1.0	2.0
Merged-chr1-74304609-4	chr1	74304109	74305109	+	961.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027154)	promoter-TSS (NM_027154)	-273.0	NM_027154	69660.0	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24878036-4	chr5	24877538	24878538	+	961.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 8 of 15)	intron (NM_145401, intron 8 of 15)	-24531.0	NR_040684	71161.0	Mm.443533	NR_040684	ENSMUSG00000086446	Prkag2os1	4933426D04Rik	protein kinase, AMP-activated, gamma 2 non-catalytic subunit, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101029581-4	chr7	101029073	101030073	+	961.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17520.0	NM_001302346	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114892270-4	chr6	114891753	114892753	+	961.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	29568.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18858747-4	chr16	18858248	18859248	+	961.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17889.0	NM_010922	18100.0	Mm.20918	NM_010922	ENSMUSG00000022706	Mrpl40	Nlvcf	mitochondrial ribosomal protein L40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-108458312-4	chr4	108457806	108458806	+	961.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1120.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117158525-4	chr8	117158024	117159024	+	961.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081151, intron 1 of 10)	CpG	389.0	NM_001081151	209239.0	Mm.132992	NM_001081151	ENSMUSG00000052557	Gan	A330045G18|gigaxonin	giant axonal neuropathy	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60923283-4	chr2	60922776	60923776	+	961.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	39928.0	NM_020296	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-140751188-4	chr6	140750684	140751684	+	961.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	124299.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65518034-4	chr3	65517533	65518533	+	961.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-10414.0	NM_178892	99929.0	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding	15.5	22.0	9.0	1.0	9.0	8.5
Merged-chr12-85343747-2	chr12	85343247	85344247	+	961.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 4 of 4)	PB1D10|SINE|Alu	-4385.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35199348-4	chr9	35198895	35199895	+	961.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177845, intron 1 of 6)	intron (NM_001177845, intron 1 of 6)	510.0	NM_001177847	117149.0	Mm.23987	NM_054096	ENSMUSG00000032041	Tirap	AA407980|C130027E04Rik|Mal|Tlr4ap|Wyatt	toll-interleukin 1 receptor (TIR) domain-containing adaptor protein	protein-coding	31.0	59.5	40.0	30.5	46.0	41.5
Merged-chr1-34860411-3	chr1	34859913	34860913	+	961.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357425, intron 2 of 8)	MLTR14|LTR|ERV1	10424.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60290588-3	chr10	60290098	60291098	+	961.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146124, intron 1 of 13)	intron (NM_001146124, intron 1 of 13)	6137.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146897146-4	chr5	146896653	146897653	+	961.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51504.0	NM_025652	66596.0	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	6.5	5.5	0.0	0.0	5.5	0.0
Merged-chr8-71297004-4	chr8	71296510	71297510	+	961.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	24296.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	66.0	159.5	96.5	71.0	168.0	63.0
Merged-chr17-33992022-4	chr17	33991556	33992556	+	961.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	8277.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	2.0	11.0	5.0	14.5	18.5	24.0
Merged-chr2-16170586-4	chr2	16170076	16171076	+	961.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310455, intron 35 of 38)	intron (NM_001310455, intron 35 of 38)	-185728.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-55149252-4	chr9	55148750	55149750	+	961.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346657)	promoter-TSS (NM_001346657)	-119.0	NM_180600	109161.0	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-143079235-5	chr6	143078702	143079702	+	961.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362118, intron 6 of 25)	intron (NM_001362118, intron 6 of 25)	20950.0	NM_001362118	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82976145-4	chr18	82975636	82976636	+	961.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183033, intron 2 of 5)	intron (NM_183033, intron 2 of 5)	-55576.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3154379-5	chr11	3153884	3154884	+	961.840027	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 13 of 32)	intron (NM_030207, intron 13 of 32)	30363.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59750078-2	chr9	59749578	59750578	+	961.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172069, intron 1 of 2)	intron (NM_001172069, intron 1 of 2)	571.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-104450924-3	chr2	104450406	104451406	+	961.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010434, intron 2 of 15)	L2a|LINE|L2	-21966.0	NR_035432	100316678.0		NR_035432	ENSMUSG00000084516	Mir1902	Mirn1902|mmu-mir-1902	microRNA 1902	ncRNA	2.0	0.0	3.0	2.0	6.5	5.5
Merged-chr6-124839848-2	chr6	124839348	124840348	+	961.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_013530, intron 1 of 9)	intron (NM_013530, intron 1 of 9)	427.0	NM_013530	14695.0	Mm.68889	NM_013530	ENSMUSG00000023439	Gnb3	Gnb-3	guanine nucleotide binding protein (G protein), beta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23846616-4	chr11	23846130	23847130	+	961.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48640.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124741113-3	chr2	124740608	124741608	+	961.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87527.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34435429-4	chr19	34434928	34435928	+	961.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39707.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-15063574-3	chr18	15063071	15064071	+	961.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142731)	promoter-TSS (NM_001142731)	11.0	NM_001142731	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0.0	0.0	2.0	0.0	0.0	1.5
Merged-chr5-140749229-3	chr5	140748723	140749723	+	961.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_173405, exon 7 of 8)	exon (NM_173405, exon 7 of 8)	25096.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-35030518-3	chr15	35030018	35031018	+	961.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357821, intron 7 of 11)	intron (NM_001357821, intron 7 of 11)	125288.0	NM_001357821	56274.0	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123043490-4	chr8	123043002	123044002	+	961.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045268, exon 1 of 1)	non-coding (NR_045268, exon 1 of 1)	927.0	NR_045268	100503178.0	Mm.294938	NR_045268	ENSMUSG00000099881	2810013P06Rik	-	RIKEN cDNA 2810013P06 gene	ncRNA	16.0	98.0	37.0	7.0	62.0	28.5
Merged-chr7-139208199-4	chr7	139207708	139208708	+	961.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162540, intron 1 of 11)	intron (NM_001162540, intron 1 of 11)	-4780.0	NM_027164	76612.0	Mm.17757	NM_027164	ENSMUSG00000015980	Lrrc27	1700071K18Rik|2310044E02Rik	leucine rich repeat containing 27	protein-coding	17.0	6.0	7.0	3.0	4.0	4.0
Merged-chr4-10968039-4	chr4	10967519	10968519	+	961.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39600.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	0.0	2.5	0.0	2.5	16.0	8.0
Merged-chr11-115564317-4	chr11	115563848	115564848	+	961.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001002929)	promoter-TSS (NM_001002929)	-96.0	NM_001002929	445007.0	Mm.4379	NM_001002929	ENSMUSG00000020739	Nup85	Pcnt1|frount	nucleoporin 85	protein-coding	18.5	61.0	36.5	29.5	64.5	35.0
Merged-chr12-86801362-3	chr12	86800878	86801878	+	961.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67009.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55404633-3	chr1	55404153	55405153	+	961.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1293.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr12-102663571-3	chr12	102663080	102664080	+	961.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 2 of 9)	intron (NM_172584, intron 2 of 9)	21440.0	NR_035457	100316812.0		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98735544-3	chr12	98735041	98736041	+	961.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011877)	promoter-TSS (NM_011877)	-896.0	NM_011877	24000.0	Mm.4420	NM_011877	ENSMUSG00000021009	Ptpn21	PTPD1|PTPRL10	protein tyrosine phosphatase, non-receptor type 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45627008-4	chr17	45626514	45627514	+	961.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24912.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-118498496-4	chr1	118498007	118499007	+	961.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359330, intron 9 of 39)	intron (NM_001359330, intron 9 of 39)	-39242.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-45881747-3	chr18	45881247	45882247	+	961.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040342, intron 2 of 3)	intron (NR_040342, intron 2 of 3)	163513.0	NR_040342	107003.0	Mm.395148	NR_040342		A330093E20Rik	AU043608	RIKEN cDNA A330093E20 gene	ncRNA	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr14-79034722-3	chr14	79034204	79035204	+	961.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027906, intron 20 of 44)	intron (NM_027906, intron 20 of 44)	164486.0	NR_152203	100043765.0	Mm.435553	NR_152203	ENSMUSG00000115111	Gm4632	-	predicted gene 4632	ncRNA	1.5	9.5	13.0	27.5	34.5	21.5
Merged-chr10-22334184-3	chr10	22333694	22334694	+	961.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	L1_Mus1|LINE|L1	27474.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0.0	8.0	3.0	6.0	3.5	6.0
Merged-chr12-104471750-4	chr12	104471261	104472261	+	961.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010351, intron 2 of 2)	intron (NM_010351, intron 2 of 2)	1475.0	NM_010351	14836.0	Mm.129	NM_010351	ENSMUSG00000021095	Gsc	-	goosecoid homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-90509508-4	chr18	90509012	90510012	+	961.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198295)	promoter-TSS (NM_198295)	-642.0	NM_198295	67988.0	Mm.268041	NM_198295	ENSMUSG00000024614	Tmx3	6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830	thioredoxin-related transmembrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104234495-4	chr9	104234054	104235054	+	961.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 5 of 56)	intron (NM_001359740, intron 5 of 56)	28376.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-57598535-4	chr18	57598017	57599017	+	961.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311063, intron 5 of 5)	ORR1E|LTR|ERVL-MaLR	40068.0	NR_045360	70157.0	Mm.490532	NR_045360		2210409D07Rik	-	RIKEN cDNA 2210409D07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51837522-4	chr13	51837014	51838014	+	961.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9161.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-161108580-4	chr2	161108100	161109100	+	961.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126509, intron 1 of 35)	CpG	486.0	NM_173368	71389.0	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3909871-2	chr12	3909371	3910371	+	961.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001271753, exon 23 of 23)	3' UTR (NM_001271753, exon 23 of 23)	18127.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-46742912-4	chr14	46742436	46743436	+	961.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-17605.0	NM_001360041	72391.0	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding	7.0	20.0	16.0	30.0	26.5	20.5
Merged-chr15-68260190-4	chr15	68259687	68260687	+	961.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1331.0	NM_198644	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	16.5	72.0	55.5	26.0	80.5	64.0
Merged-chr11-16507581-4	chr11	16507100	16508100	+	961.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011343, intron 1 of 3)	intron (NM_011343, intron 1 of 3)	884.0	NM_011343	20335.0	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-87056026-4	chr5	87055540	87056540	+	961.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_3-LTR_MM|LTR|ERVK	36515.0	NM_001029867	231396.0	Mm.439851	NM_001029867	ENSMUSG00000070704	Ugt2b36	-	UDP glucuronosyltransferase 2 family, polypeptide B36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118596157-4	chr10	118595645	118596645	+	961.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39620.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	10.0	2.5	8.0	14.5	7.0	9.0
Merged-chr5-41627701-4	chr5	41627206	41628206	+	961.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310589, intron 6 of 6)	intron (NM_001310589, intron 6 of 6)	79985.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	1.5	16.0	11.5	1.5	10.5	6.0
Merged-chr3-117995581-4	chr3	117995089	117996089	+	961.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126653.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	0.0	2.5	0.0	2.0	1.0	0.0
Merged-chr10-117277958-4	chr10	117277452	117278452	+	961.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_017372, exon 4 of 4)	3' UTR (NM_017372, exon 4 of 4)	4320.0	NM_017372	17105.0	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77954583-3	chr18	77954097	77955097	+	961.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195633, intron 4 of 43)	intron (NM_001195633, intron 4 of 43)	16130.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137883529-3	chr5	137883041	137884041	+	961.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11783.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107056528-4	chr13	107056034	107057034	+	961.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	33964.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0.0	2.5	0.0	0.0	2.0	0.0
Merged-chr6-82969579-4	chr6	82969062	82970062	+	961.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 3 of 9)	L1MCa|LINE|L1	22640.0	NM_033079	110958.0	Mm.100652	NM_033079	ENSMUSG00000030041	M1ap	D6Mm5e	meiosis 1 associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-78913140-3	chr7	78912615	78913615	+	961.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291220)	promoter-TSS (NM_001291220)	-309.0	NM_001291221	57444.0	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6518782-4	chr19	6518277	6519277	+	961.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 21 of 22)	intron (NM_001205234, intron 21 of 22)	24293.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-150674370-4	chr5	150673808	150674808	+	961.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175310, intron 1 of 34)	CpG	481.0	NM_001346503	100710.0	Mm.32959	NM_175310	ENSMUSG00000034021	Pds5b	AI646570|AS3|AW212954|Aprin|Tg(Wap-ERBB2)229Wzw|WAP-Her-2|mKIAA0979	PDS5 cohesin associated factor B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105620673-4	chr5	105620181	105621181	+	961.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79288.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121744048-10	chr11	121743566	121744566	+	961.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41639.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86632614-4	chr4	86632104	86633104	+	961.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20549.0	NM_173400	230376.0	Mm.74730	NM_173400	ENSMUSG00000038047	Haus6	6230416J20Rik|9830144E06|D4Ertd27e|mKIAA1574	HAUS augmin-like complex, subunit 6	protein-coding	0.0	5.0	2.0	0.0	0.0	0.0
Merged-chr2-58566689-4	chr2	58566078	58567078	+	961.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289660)	promoter-TSS (NM_001289660)	250.0	NM_001110205	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-5063321-2	chr7	5062821	5063821	+	961.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205231, intron 1 of 11)	intron (NM_001205231, intron 1 of 11)	1178.0	NM_001205231	22185.0	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	6.5	36.5	25.5	21.0	11.0	17.5
Merged-chr2-30128995-4	chr2	30128488	30129488	+	961.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4377.0	NM_001290503	227693.0	Mm.44526	NM_178694	ENSMUSG00000039686	Zer1	C230075L19Rik|Zyg11bl	zyg-11 related, cell cycle regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134374728-3	chr5	134374223	134375223	+	961.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081462, intron 22 of 29)	intron (NM_001081462, intron 22 of 29)	48269.0	NR_039544	100628570.0		NR_039544	ENSMUSG00000093311	Mir3965	mmu-mir-3965|mu-mir-3965	microRNA 3965	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29765301-4	chr17	29764798	29765798	+	961.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48281.0	NM_001163741	68597.0	Mm.390979	NM_026782	ENSMUSG00000024018	Ccdc167	1110021J02Rik	coiled-coil domain containing 167	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3899138-4	chr19	3898644	3899644	+	961.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136091, intron 10 of 19)	intron (NM_001136091, intron 10 of 19)	6086.0	NM_016921	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-19733517-4	chr14	19732977	19733977	+	961.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17780.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19740521-2	chr7	19740021	19741021	+	961.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008990, intron 1 of 8)	intron (NM_008990, intron 1 of 8)	9052.0	NM_008990	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83034061-4	chr6	83033551	83034551	+	961.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291799)	promoter-TSS (NM_001291799)	-173.0	NM_013586	16950.0	Mm.380433	NM_013586	ENSMUSG00000000693	Loxl3	Lor2|Loxl2	lysyl oxidase-like 3	protein-coding	27.5	65.0	46.5	50.0	97.0	54.5
Merged-chr2-103965714-4	chr2	103965217	103966217	+	961.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142337, intron 1 of 3)	intron (NM_001142337, intron 1 of 3)	-3840.0	NM_001142336	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156720129-4	chr2	156719630	156720630	+	961.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042488)	promoter-TSS (NM_001042488)	779.0	NR_040505	74846.0	Mm.443946	NR_040505	ENSMUSG00000086638	4930405A21Rik	-	RIKEN cDNA 4930405A21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73939161-3	chr17	73938653	73939653	+	961.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 4 of 35)	MTE2b|LTR|ERVL-MaLR	11043.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-20255309-3	chr3	20254819	20255819	+	961.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029706, intron 9 of 10)	MER20|DNA|hAT-Charlie	-13138.0	NM_007753	12873.0	Mm.1135	NM_007753	ENSMUSG00000001865	Cpa3	MC-CPA	carboxypeptidase A3, mast cell	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-32319317-3	chr6	32318837	32319837	+	961.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-191804.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	1.0	2.5	3.0	4.0	5.0	4.5
Merged-chr9-55395870-4	chr9	55395364	55396364	+	961.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172923, intron 3 of 10)	intron (NM_172923, intron 3 of 10)	68951.0	NM_001357568	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131364610-4	chr1	131364113	131365113	+	961.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 4 of 22)	intron (NM_001081011, intron 4 of 22)	-85050.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40099506-4	chr10	40098934	40099934	+	961.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	L1MC1|LINE|L1	42820.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170343884-7	chr2	170343415	170344415	+	961.5476070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12446.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112752414-4	chr13	112751924	112752924	+	961.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48353.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115879908-4	chr6	115879379	115880379	+	961.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167763, intron 5 of 28)	intron (NM_001167763, intron 5 of 28)	26351.0	NM_031177	81896.0	Mm.333335	NM_031177	ENSMUSG00000030323	Ift122	C86139|Wdr10|sopb	intraflagellar transport 122	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165459803-6	chr1	165459298	165460298	+	961.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028759, intron 1 of 18)	CpG	665.0	NM_028759	74106.0	Mm.227605	NM_028759	ENSMUSG00000026571	Dcaf6	1200006M05Rik|Iqwd1|PC326	DDB1 and CUL4 associated factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52985581-4	chr13	52985082	52986082	+	961.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4543.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	0.0	0.0	0.5	0.0	0.0	1.0
Merged-chr8-25037524-2	chr8	25037024	25038024	+	961.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081187, intron 2 of 8)	intron (NM_001081187, intron 2 of 8)	1438.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	0.0	0.0	0.0	0.0	2.5	4.5
Merged-chr19-45004080-2	chr19	45003580	45004580	+	961.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011976)	TTS (NM_011976)	-1583.0	NM_001348254	226153.0	Mm.105585	NM_153796	ENSMUSG00000025209	Twnk	D19Ertd626e|PEO|Peo1|Twinl	twinkle mtDNA helicase	protein-coding	7.5	5.0	7.5	1.0	0.0	3.5
Merged-chr10-32175270-2	chr10	32174770	32175770	+	961.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025286, intron 3 of 3)	intron (NM_001025286, intron 3 of 3)	-565545.0	NM_001146349	268291.0	Mm.295212	NM_001146349	ENSMUSG00000063760	Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-123171770-2	chr6	123171270	123172270	+	961.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1253.0	NM_001004159	381809.0	Mm.333372	NM_001004159	ENSMUSG00000067767	Clec4b2	Aplra1|F830043G12Rik|mDCAR1	C-type lectin domain family 4, member b2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-38039022-2	chr1	38038522	38039522	+	961.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198303, intron 12 of 23)	intron (NM_198303, intron 12 of 23)	41012.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-34568761-2	chr14	34568261	34569261	+	961.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039071, intron 5 of 12)	intron (NM_001039071, intron 5 of 12)	19846.0	NM_001039074	24131.0	Mm.29733	NM_011918	ENSMUSG00000021798	Ldb3	AW742271|PDLIM6|ZASP	LIM domain binding 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28747730-2	chr7	28747230	28748230	+	961.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023637, intron 6 of 15)	intron (NM_023637, intron 6 of 15)	5762.0	NM_023637	71984.0	Mm.333725	NM_023637	ENSMUSG00000070699	Sars2	2410015F05Rik|D7Ertd353e|SerRS|SerRSmt	seryl-aminoacyl-tRNA synthetase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116336371-4	chr7	116335859	116336859	+	961.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011083)	TTS (NM_011083)	-2169.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46290881-2	chr19	46290381	46291381	+	961.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-13856.0	NM_001177369	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128755067-2	chr2	128754567	128755567	+	961.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 6 of 18)	intron (NM_008587, intron 6 of 18)	56152.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	5.5	12.5	10.5	9.5	14.5	8.5
Merged-chr2-37704312-2	chr2	37703812	37704812	+	961.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16028.0	NR_039590	100628597.0		NR_039590	ENSMUSG00000092958	Mir5128	mir-5128|mmu-mir-5128|mu-mir-5128	microRNA 5128	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90456535-2	chr2	90456035	90457035	+	961.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 10 of 23)	MIRb|SINE|MIR	22639.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135244519-2	chr4	135244019	135245019	+	961.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	28241.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-26199251-2	chr6	26198751	26199751	+	961.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	267825.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34013551-4	chr1	34013054	34014054	+	961.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134448, intron 1 of 97)	intron (NM_134448, intron 1 of 97)	1729.0	NM_134448	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11418471-4	chr16	11417964	11418964	+	961.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 9 of 20)	intron (NM_028964, intron 9 of 20)	12816.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134211458-3	chr6	134210948	134211948	+	961.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	175748.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152122820-3	chr3	152122310	152123310	+	961.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016867, intron 3 of 5)	ORR1C1|LTR|ERVL-MaLR	43090.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16382549-2	chr19	16382049	16383049	+	961.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 6 of 6)	MTD|LTR|ERVL-MaLR	-53118.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171276540-3	chr1	171276037	171277037	+	961.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008911)	TTS (NM_008911)	4649.0	NM_008911	19044.0	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	0.0	0.0	0.0	3.5	13.0	8.5
Merged-chr1-157380925-4	chr1	157380432	157381432	+	961.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177644, intron 1 of 17)	intron (NM_177644, intron 1 of 17)	-31420.0	NR_027984	69953.0	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	15.0	46.0	28.5	29.5	56.0	45.0
Merged-chr16-90142835-2	chr16	90142335	90143335	+	961.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033476, exon 1 of 1)	non-coding (NR_033476, exon 1 of 1)	598.0	NR_033476	100038709.0	Mm.484070	NR_033476		Gm10789	-	predicted gene 10789	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115512470-2	chr5	115511968	115512968	+	961.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	5792.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	7.0	26.0	25.5	40.0	118.0	58.5
Merged-chr13-59779440-2	chr13	59778940	59779940	+	961.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153538, intron 26 of 27)	intron (NM_153538, intron 26 of 27)	9474.0	NR_015349	13996.0	Mm.490435	NR_015349		Etohd2	AW491659	ethanol decreased 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106376437-3	chr1	106375926	106376926	+	961.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 13 of 16)	intron (NM_133821, intron 13 of 16)	170205.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15830902-4	chr17	15830413	15831413	+	961.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4327.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0.0	0.0	0.5	0.0	5.0	0.0
Merged-chr7-68157619-4	chr7	68157118	68158118	+	961.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	106615.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126571252-4	chr8	126570726	126571726	+	961.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22210.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44407581-3	chr13	44407072	44408072	+	961.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie4a|DNA|hAT-Charlie	-32155.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	9.5	15.5	4.0	9.5	6.0	8.0
Merged-chr3-37744089-7	chr3	37743581	37744581	+	961.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19721.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-63545854-4	chr15	63545316	63546316	+	961.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-66208.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	32.0	28.5	55.5	22.0	20.0	17.0
Merged-chr3-32508977-8	chr3	32508492	32509492	+	961.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1558.0	NM_001161818	67778.0	Mm.285620	NM_144519	ENSMUSG00000027667	Zfp639	6230400O18Rik|ANC-2H01|ZASC1|Znf639	zinc finger protein 639	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-100958625-2	chr10	100958127	100959127	+	961.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR10D2|LTR|ERVK	-216992.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	0.0	0.0	1.5	0.0	6.5	4.0
Merged-chr12-80279637-4	chr12	80279154	80280154	+	961.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-19273.0	NM_001346669	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43249374-4	chr4	43248879	43249879	+	961.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081413, intron 24 of 39)	intron (NM_001081413, intron 24 of 39)	-17780.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	7.5	5.5	7.5	34.0	27.5	49.5
Merged-chr15-27884556-4	chr15	27884031	27885031	+	961.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 9 of 56)	intron (NM_001081302, intron 9 of 56)	141317.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101417393-4	chr11	101416897	101417897	+	961.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144829)	promoter-TSS (NM_144829)	36.0	NM_144829	69684.0	Mm.146283	NM_144829	ENSMUSG00000075528	Aarsd1	1110069E20Rik|2310044P18Rik|AA589600|AlaX|AlaXp-II	alanyl-tRNA synthetase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-59036948-3	chr19	59036459	59037459	+	961.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 5 of 16)	intron (NM_001114312, intron 5 of 16)	39110.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35135837-3	chr8	35135321	35136321	+	961.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-170131.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	27.0	24.0	16.0	7.0	3.5	4.0
Merged-chr10-42153032-3	chr10	42152531	42153531	+	961.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	123711.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-90977062-4	chr8	90976554	90977554	+	961.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001310530, exon 4 of 38)	exon (NM_001310530, exon 4 of 38)	44805.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	28.0	56.0	40.5	45.0	50.5	42.5
Merged-chr2-143847100-4	chr2	143846597	143847597	+	961.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291061, intron 3 of 7)	LTR16E1|LTR|ERVL	16076.0	NM_009751	12075.0	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76957350-4	chr12	76956813	76957813	+	961.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146176, intron 1 of 3)	intron (NM_001146176, intron 1 of 3)	4935.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38949217-4	chr6	38948724	38949724	+	961.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 2 of 12)	intron (NM_011539, intron 2 of 12)	30238.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13644381-4	chr8	13643935	13644935	+	961.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	33152.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	42.5	75.0	51.5	44.5	93.0	56.0
Merged-chr18-57085205-3	chr18	57084705	57085705	+	961.355591	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47885.0	NM_001001979	70417.0	Mm.297863	NM_001001979	ENSMUSG00000024593	Megf10	3000002B06Rik|Gm331	multiple EGF-like-domains 10	protein-coding	0.0	3.5	2.5	0.0	0.0	0.0
Merged-chr12-69455767-4	chr12	69455262	69456262	+	961.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19788.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	16.5	26.5	20.5	25.0	39.0	32.0
Merged-chr1-172463528-4	chr1	172463027	172464027	+	961.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11833.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	7.5	21.5	6.0	7.5	12.0	4.0
Merged-chr18-78021407-4	chr18	78020915	78021915	+	961.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195633, intron 36 of 43)	intron (NM_001195633, intron 36 of 43)	35853.0	NM_001101038	620235.0	Mm.35607	NM_001101038	ENSMUSG00000091055	Siglec15	Cd33l3|EG620235|SIGLEC-I	sialic acid binding Ig-like lectin 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-67463968-4	chr13	67463463	67464463	+	961.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-12339.0	NM_177712	238692.0	Mm.486478	NM_177712	ENSMUSG00000069206	Zfp874a	C330011K17Rik|Rslcan15|Zfp874	zinc finger protein 874a	protein-coding	0.0	9.5	2.0	0.0	1.5	3.5
Merged-chr1-156467824-4	chr1	156467334	156468334	+	961.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 1 of 15)	intron (NM_009230, intron 1 of 15)	6494.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	112.0	167.5	192.0	96.5	118.0	109.5
Merged-chr7-92653517-4	chr7	92653015	92654015	+	961.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029078, intron 8 of 15)	B1_Mus1|SINE|Alu	-16373.0	NM_028665	73845.0	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	10.5	3.0	13.0	21.0	0.0	15.0
Merged-chr7-89979743-3	chr7	89979241	89980241	+	961.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021876, intron 1 of 11)	intron (NM_021876, intron 1 of 11)	1235.0	NM_021876	13626.0	Mm.380914	NM_021876	ENSMUSG00000030619	Eed	l(7)5Rn|l7Rn5|lusk	embryonic ectoderm development	protein-coding	30.0	148.0	90.0	48.5	135.0	89.5
Merged-chr1-119502703-4	chr1	119502203	119503203	+	961.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022327, intron 1 of 4)	RSINE1|SINE|B4	2079.0	NM_022327	64143.0	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-83526375-4	chr4	83525864	83526864	+	961.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355549, intron 1 of 24)	intron (NM_001355549, intron 1 of 24)	819.0	NM_001355378	320226.0	Mm.180032	NM_029117	ENSMUSG00000052407	Ccdc171	4930418J05Rik|4930473A06Rik|A330015D16Rik	coiled-coil domain containing 171	protein-coding	23.0	28.0	34.0	16.5	35.5	27.5
Merged-chr14-19976719-4	chr14	19976204	19977204	+	961.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285911)	promoter-TSS (NM_001285911)	-11.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37913292-3	chr13	37912797	37913797	+	961.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 6 of 9)	intron (NM_001039188, intron 6 of 9)	24426.0	NM_001177869	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-66132104-3	chr2	66131596	66132596	+	961.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7303.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121833879-7	chr5	121833521	121834521	+	961.292542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001306127, intron 1 of 8)	intron (NM_001306127, intron 1 of 8)	2083.0	NM_001306126	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-57394173-4	chr1	57393673	57394673	+	961.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037742, intron 3 of 7)	intron (NM_001037742, intron 3 of 7)	-12375.0	NM_001081181	68115.0	Mm.275428	NM_001081181	ENSMUSG00000025971	Maip1	9430016H08Rik|AA409999|C78988	matrix AAA peptidase interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7207590-4	chr10	7207083	7208083	+	961.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172546, intron 1 of 12)	intron (NM_172546, intron 1 of 12)	4654.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	8.5	35.5	20.0	7.5	10.5	8.0
Merged-chr2-144550813-3	chr2	144550311	144551311	+	961.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015754)	promoter-TSS (NM_015754)	48.0	NM_015754	26450.0	Mm.440564	NM_015754	ENSMUSG00000027428	Rbbp9	Bog	retinoblastoma binding protein 9, serine hydrolase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-114133581-4	chr8	114133087	114134087	+	961.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290182)	promoter-TSS (NM_001290182)	13.0	NM_024437	67528.0	Mm.27889	NM_024437	ENSMUSG00000031767	Nudt7	1300007B24Rik|2210404C19Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 7	protein-coding	3.0	1.5	1.5	0.0	5.0	6.0
Merged-chr8-72297166-4	chr8	72296675	72297675	+	961.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21887.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	106.5	271.5	280.5	69.5	282.5	229.0
Merged-chr1-149827194-4	chr1	149826697	149827697	+	961.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95242.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94290291-4	chr16	94289798	94290798	+	961.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360045)	promoter-TSS (NM_001360045)	-7.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35208572-4	chr8	35208105	35209105	+	961.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-167136.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	9.0	22.5	9.0	1.5	0.0	1.5
Merged-chr7-45741406-4	chr7	45740869	45741869	+	961.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360784, intron 1 of 5)	MTD|LTR|ERVL-MaLR	1109.0	NM_001360784	54200.0	Mm.271634	NM_017465	ENSMUSG00000003271	Sult2b1	AI326997|BB173635|ST2B1|SULT2B	sulfotransferase family, cytosolic, 2B, member 1	protein-coding	17.0	35.0	5.0	0.0	1.5	0.0
Merged-chr6-116006952-4	chr6	116006451	116007451	+	961.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11946.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-58284666-4	chr14	58284149	58285149	+	961.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	211963.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86277559-4	chr15	86277045	86278045	+	961.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358062)	promoter-TSS (NM_001358062)	-130.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102801697-4	chr4	102801186	102802186	+	961.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144906, intron 1 of 23)	L1MB8|LINE|L1	41551.0	NM_001285859	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	8.0	25.0	6.0	19.5	10.0	1.0
Merged-chr8-19703429-3	chr8	19702975	19703975	+	961.238098	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-26101.0	NM_001270553	100861668.0	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-24336601-3	chr19	24336091	24337091	+	961.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008846, intron 13 of 14)	intron (NM_008846, intron 13 of 14)	-56005.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	5.0	20.5	18.0	9.5	16.5	5.5
Merged-chr4-154189121-3	chr4	154188626	154189626	+	961.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162977, intron 3 of 36)	intron (NM_001162977, intron 3 of 36)	18413.0	NM_001162977	230971.0	Mm.275216	NM_172273	ENSMUSG00000057751	Megf6	2600001P17Rik|Egfl3	multiple EGF-like-domains 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94223857-3	chr10	94223353	94224353	+	961.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24844.0	NM_025551	66414.0	Mm.27886	NM_025551	ENSMUSG00000020022	Ndufa12	2410011G03Rik|AW112974	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12	protein-coding	1.5	0.0	3.0	3.0	18.0	7.5
Merged-chr17-35279463-3	chr17	35278973	35279973	+	961.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie4z|DNA|hAT-Charlie	16350.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr10-80033339-4	chr10	80032830	80033830	+	961.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	6329.0	NM_025554	66420.0	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6978799-4	chr17	6978311	6979311	+	961.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026611).2	promoter-TSS (NM_026611).2	-49.0	NM_026611	68195.0	Mm.181237	NM_026611	ENSMUSG00000094724	Rnaset2b	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-122838610-4	chr4	122838118	122839118	+	961.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008917, intron 1 of 8)	L2b|LINE|L2	2391.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120469911-4	chr6	120469366	120470366	+	961.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 1 of 12)	intron (NM_008359, intron 1 of 12)	6669.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-122923154-4	chr9	122922650	122923650	+	961.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009544)	promoter-TSS (NM_009544)	72.0	NM_009544	22646.0	Mm.290595	NM_009544	ENSMUSG00000057895	Zfp105	AW557864	zinc finger protein 105	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-50406125-4	chr3	50405638	50406638	+	961.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011990, intron 6 of 11)	intron (NM_011990, intron 6 of 11)	37475.0	NM_011990	26570.0	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	23.5	6.5	6.5	17.0	12.5	24.0
Merged-chr11-4596832-4	chr11	4596320	4597320	+	961.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2005.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10266641-4	chr19	10266128	10267128	+	961.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 5 of 19)	intron (NM_198114, intron 5 of 19)	-25880.0	NM_001033481	225908.0	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	0.0	3.0	0.5	0.0	0.0	0.0
Merged-chr4-132963681-4	chr4	132963196	132964196	+	961.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10399.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-47077573-2	chr7	47077073	47078073	+	961.1666869999999	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013643)	TTS (NM_013643)	5651.0	NR_106023	102465639.0		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117259459-6	chr8	117258917	117259917	+	961.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	2398.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126882944-2	chr8	126882444	126883444	+	961.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	33924.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139468182-2	chr5	139467682	139468682	+	961.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7648.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66277133-7	chr9	66276625	66277625	+	961.157166	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73325.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-94509457-4	chr6	94508938	94509938	+	961.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026255, intron 2 of 9)	intron (NM_026255, intron 2 of 9)	9124.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	41.0	49.0	56.5	44.5	87.5	46.0
Merged-chr4-123632324-4	chr4	123631815	123632815	+	961.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	15895.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	2.5	5.0	12.5	7.5	21.0	7.0
Merged-chr1-131915878-4	chr1	131915360	131916360	+	961.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145804, intron 1 of 6)	intron (NM_001145804, intron 1 of 6)	5402.0	NM_175294	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125418953-4	chr6	125418462	125419462	+	961.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38458.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	3.5	0.0	0.0	2.0	0.0	0.0
Merged-chr1-155087118-3	chr1	155086625	155087625	+	961.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3861.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-70568930-4	chr18	70568422	70569422	+	961.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001311071, exon 1 of 3)	exon (NM_001311071, exon 1 of 3)	630.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-65675829-4	chr11	65675322	65676322	+	961.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59010.0	NR_030417	791070.0		NR_030417	ENSMUSG00000076460	Mir744	Mirn744|mir-744|mmu-mir-744	microRNA 744	ncRNA	0.0	0.0	1.0	3.0	2.0	9.5
Merged-chr12-75833640-4	chr12	75833125	75834125	+	961.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005510, intron 1 of 115)	intron (NM_001005510, intron 1 of 115)	15307.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95652463-10	chr3	95652086	95653086	+	961.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6135.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	27.0	142.5	74.0	52.0	119.0	74.0
Merged-chr11-120784232-4	chr11	120783723	120784723	+	961.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009053)	promoter-TSS (NM_009053)	-19.0	NM_009053	19719.0	Mm.871	NM_009053	ENSMUSG00000025158	Rfng	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81620436-4	chr10	81619936	81620936	+	961.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6886.0	NM_001163430	50721.0	Mm.25643	NM_181586	ENSMUSG00000034748	Sirt6	2810449N18Rik|AI043036|Sir2l6	sirtuin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64752416-3	chr17	64751957	64752957	+	961.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008549, exon 22 of 22)	exon (NM_008549, exon 22 of 22)	-14654.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99203753-4	chr10	99203264	99204264	+	961.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59467.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-48750581-4	chr7	48750073	48751073	+	961.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38430.0	NM_028031	243983.0	Mm.279116	NM_028031	ENSMUSG00000030471	Zdhhc13	2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4	zinc finger, DHHC domain containing 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132151803-4	chr2	132151295	132152295	+	961.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-6475.0	NM_001355430	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52079414-4	chr13	52078909	52079909	+	961.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17332.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-82901622-4	chr10	82901128	82902128	+	961.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35002.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	13.5	6.0	4.5	2.5	20.0	1.5
Merged-chr5-43293318-4	chr5	43292808	43293808	+	961.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57954.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-52502321-4	chr12	52501828	52502828	+	961.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13749.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	17.5	35.0	15.0	4.0	17.0	8.0
Merged-chr15-34181823-4	chr15	34181317	34182317	+	961.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56209.0	NM_033521	114128.0	Mm.197518	NM_033521	ENSMUSG00000022257	Laptm4b	C330023P13Rik|LAPTM4beta	lysosomal-associated protein transmembrane 4B	protein-coding	0.0	5.5	0.0	0.5	4.5	4.5
Merged-chr17-34317421-3	chr17	34316907	34317907	+	961.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010382)	TTS (NM_010382)	-8268.0	NM_001033978	381091.0	Mm.139204	NM_001033978	ENSMUSG00000067341	H2-Eb2	A130038H09Rik|H-2Eb2|Ia-5|Ia5|Iebeta2	histocompatibility 2, class II antigen E beta2	protein-coding	8.0	37.5	14.5	10.0	40.5	19.0
Merged-chr17-40790037-4	chr17	40789550	40790550	+	961.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204071, intron 4 of 9)	MLT1D|LTR|ERVL-MaLR	4096.0	NM_001204071	22024.0	Mm.1296	NM_009420	ENSMUSG00000023930	Crisp2	CRISP-2|GAPDL5|Tpx-1|Tpx1	cysteine-rich secretory protein 2	protein-coding	4.0	1.5	1.5	2.0	4.0	6.5
Merged-chr9-55272166-4	chr9	55271683	55272683	+	961.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	MTD|LTR|ERVL-MaLR	11442.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-50014739-4	chr18	50014235	50015235	+	961.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	-16249.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	22.0	32.5	24.5	32.0	48.5	26.5
Merged-chr3-60531460-4	chr3	60530974	60531974	+	961.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	30295.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	12.0	19.5	8.5	22.5	57.0	45.5
Merged-chr10-58350829-4	chr10	58350368	58351368	+	961.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026148, intron 1 of 9)	intron (NM_026148, intron 1 of 9)	-1095.0	NM_001359116	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80416733-4	chr18	80416236	80417236	+	961.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 12 of 12)	intron (NM_026295, intron 12 of 12)	-52482.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	3.0	20.0	14.0	2.5	10.5	14.0
Merged-chr11-93980022-4	chr11	93979523	93980523	+	961.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11502.0	NM_008704	18102.0	Mm.439702	NM_008704	ENSMUSG00000037601	Nme1	AL024257|NDPK-A|NM23-M1|NM23A	NME/NM23 nucleoside diphosphate kinase 1	protein-coding	9.5	29.5	17.5	7.5	25.5	12.5
Merged-chr10-21855498-4	chr10	21854974	21855974	+	961.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26710.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.0	5.0	0.5	0.0	6.0	0.5
Merged-chr10-128092550-7	chr10	128092058	128093058	+	961.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054078)	promoter-TSS (NM_054078)	-225.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0.5	4.0	2.5	0.5	4.0	2.5
Merged-chr18-34651375-1	chr18	34650875	34651875	+	961.0	f1_balb.idr	intron (NM_178347, intron 2 of 15)	CpG	361.0	NM_178347	52563.0	Mm.196638	NM_178347	ENSMUSG00000024370	Cdc23	6030435O18|D18Ertd243e	CDC23 cell division cycle 23	protein-coding	7.5	26.5	20.0	9.5	11.5	28.0
Merged-chr7-80229879-4	chr7	80229391	80230391	+	961.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291276, intron 1 of 4)	PB1D10|SINE|Alu	2914.0	NM_001291276	23991.0	Mm.30217	NM_011870	ENSMUSG00000030538	Cib1	Cibkip|Kip|Prkdcip	calcium and integrin binding 1 (calmyrin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99171358-4	chr9	99170866	99171866	+	961.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31155.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34907865-2	chr2	34907365	34908365	+	961.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028716, intron 3 of 14)	intron (NM_028716, intron 3 of 14)	6111.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85575030-4	chr12	85574538	85575538	+	961.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-24067.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-43284443-3	chr9	43283935	43284935	+	961.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24556.0	NM_001243261	235302.0	Mm.135745	NM_001243261		D630033O11Rik	Gm588	RIKEN cDNA D630033O11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86541787-3	chr4	86541295	86542295	+	961.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081096, intron 1 of 3)	intron (NM_001081096, intron 1 of 3)	16508.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	0.0	4.0	1.0	0.0	3.0	0.0
Merged-chr6-29274501-2	chr6	29274001	29275001	+	961.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023516, intron 1 of 1)	intron (NM_023516, intron 1 of 1)	1875.0	NM_023516	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-61376823-2	chr1	61376323	61377323	+	961.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1609.0	NR_040483	77341.0	Mm.402964	NR_040483	ENSMUSG00000085447	9530026F06Rik	-	RIKEN cDNA 9530026F06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-129437861-3	chr3	129437365	129438365	+	961.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4192.0	NR_033594	435755.0	Mm.430561	NR_033594	ENSMUSG00000105712	Pou5f1-rs4	EG435755|Gm5712|Oct4P1|Otf3-rs4|Otf3d	POU domain, class 5, transcription factor 1, related sequence 4	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124664765-2	chr2	124664265	124665265	+	961.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172537, exon 17 of 17)	exon (NM_172537, exon 17 of 17)	11184.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8569142-3	chr15	8568644	8569644	+	961.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-124681.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88083924-2	chr3	88083424	88084424	+	961.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033484, intron 1 of 37)	intron (NM_001033484, intron 1 of 37)	1873.0	NM_001033484	404710.0	Mm.331133	NM_001033484	ENSMUSG00000028068	Iqgap3	AI593484|D030034H08	IQ motif containing GTPase activating protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-44180625-3	chr1	44180130	44181130	+	961.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011729, exon 15 of 15)	exon (NM_011729, exon 15 of 15)	32886.0	NM_011729	22592.0	Mm.2213	NM_011729	ENSMUSG00000026048	Ercc5	Xpg	excision repair cross-complementing rodent repair deficiency, complementation group 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64095885-2	chr15	64095385	64096385	+	961.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 26 of 28)	ORR1C2|LTR|ERVL-MaLR	-35437.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	9.5	11.0	19.0	5.5	13.0	10.5
Merged-chr10-115806127-4	chr10	115805615	115806615	+	961.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-11169.0	NM_001168680	216350.0	Mm.22270	NM_146010	ENSMUSG00000034127	Tspan8	C76990|E330007O21Rik|Tm4sf3	tetraspanin 8	protein-coding	0.0	0.5	3.5	0.0	3.0	2.0
Merged-chr1-39369358-2	chr1	39368858	39369858	+	961.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252219, intron 2 of 4)	intron (NM_001252219, intron 2 of 4)	1507.0	NM_001252218	114641.0	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-66533473-2	chr6	66532973	66533973	+	961.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1748.0	NM_019499	56150.0	Mm.489653	NM_019499	ENSMUSG00000029910	Mad2l1	AA673185|MAD2	MAD2 mitotic arrest deficient-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130892468-2	chr4	130891968	130892968	+	961.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20866.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34198545-4	chr7	34198035	34199035	+	961.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-1865.0	NM_001360710	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53113970-3	chr15	53113478	53114478	+	961.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	232205.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11547234-2	chr8	11546734	11547734	+	961.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359137, intron 3 of 14)	intron (NM_001359137, intron 3 of 14)	3537.0	NM_024248	71941.0	Mm.196576	NM_024248	ENSMUSG00000056228	Cars2	2310051N18Rik|2410044A07Rik|D530030H10Rik|cysRS	cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20293990-1	chr16	20293490	20294490	+	961.0	f0_balb.idr	intron (NM_001005767, intron 3 of 9)	intron (NM_001005767, intron 3 of 9)	8372.0	NM_001005767	381038.0	Mm.371737	NM_001005767	ENSMUSG00000033918	Parl	D16Ertd607e|PRO2207|PSARL1|PSENIP2|Psarl	presenilin associated, rhomboid-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-115777291-3	chr9	115776785	115777785	+	961.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-132170.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	8.5	0.0	0.5	0.0	0.0	2.5
Merged-chr10-62577657-2	chr10	62577157	62578157	+	961.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028197, intron 1 of 6)	intron (NM_028197, intron 1 of 6)	800.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-149826349-4	chr1	149825861	149826861	+	961.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13C1|LTR|ERVK	96078.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-164603129-2	chr1	164602629	164603629	+	961.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	99822.0	NR_151593	102635083.0	Mm.98705	NR_151593	ENSMUSG00000097281	Gm26685	-	predicted gene, 26685	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50025792-3	chr17	50025309	50026309	+	961.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 7 of 9)	ORR1G|LTR|ERVL-MaLR	164688.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	3.5	3.0	17.0	10.0	14.5	2.0
Merged-chr8-80880535-4	chr8	80880024	80881024	+	961.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301298)	promoter-TSS (NM_001301298)	-5.0	NM_001301298	14388.0	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	2.0	17.0	8.5	0.5	15.0	4.0
Merged-chr10-80932383-4	chr10	80931895	80932895	+	960.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008655)	TTS (NM_008655)	2304.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22548375-4	chr16	22547887	22548887	+	960.9874880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346673, intron 19 of 23)	intron (NM_001346673, intron 19 of 23)	-16203.0	NR_106170	102465887.0		NR_106170	ENSMUSG00000099071	Mir8095	Gm27566|mmu-mir-8095	microRNA 8095	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19199287-4	chr3	19198808	19199808	+	960.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356295, intron 1 of 7)	intron (NM_001356295, intron 1 of 7)	11013.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108893402-6	chr12	108892857	108893857	+	960.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177602)	promoter-TSS (NM_177602)	-146.0	NM_011710	22375.0	Mm.38433	NM_011710	ENSMUSG00000021266	Wars	TrpRS|WRS	tryptophanyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100574572-4	chr5	100574072	100575072	+	960.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-2367.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	8.0	0.0	2.0	0.0	6.0	8.5
Merged-chr9-95603077-4	chr9	95602580	95603580	+	960.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34548.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45049896-4	chr9	45049401	45050401	+	960.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357727, intron 5 of 5)	intron (NM_001357727, intron 5 of 5)	-5280.0	NM_001093749	319742.0	Mm.49611	NM_176993	ENSMUSG00000070305	Mpzl3	5430427F17Rik|A530065I17Rik|rc|ruf	myelin protein zero-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105498928-3	chr5	105498427	105499427	+	960.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-20544.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14242581-4	chr2	14242049	14243049	+	960.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 2 of 29)	intron (NM_008625, intron 2 of 29)	13135.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92956812-4	chr1	92956306	92957306	+	960.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	-6216.0	NR_015525	100037260.0	Mm.442236	NR_015525	ENSMUSG00000100632	9430060I03Rik	-	RIKEN cDNA 9430060I03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25461259-8	chr14	25460650	25461650	+	960.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	1965.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	1.5	0.0	1.0	2.5	0.0	4.5
Merged-chr11-106657093-4	chr11	106656594	106657594	+	960.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001032378, intron 13 of 13)	intron (NM_001032378, intron 13 of 13)	-44164.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-97714898-4	chr1	97714403	97715403	+	960.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173760, intron 25 of 27)	intron (NM_173760, intron 25 of 27)	-52885.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73568007-2	chr7	73567507	73568507	+	960.9166869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9612.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126665932-4	chr8	126665397	126666397	+	960.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72461.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.0	14.0	6.5	4.5	0.5	5.0
Merged-chr17-6697358-4	chr17	6696855	6697855	+	960.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183370, intron 1 of 12)	intron (NM_183370, intron 1 of 12)	8283.0	NM_183370	83672.0	Mm.442201	NM_031395	ENSMUSG00000041831	Sytl3	A430092N21|Slp3|Slp3-a|Slp3-b|mFLJ00307	synaptotagmin-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61751838-2	chr11	61751338	61752338	+	960.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_144806, intron 5 of 11)	B3|SINE|B2	10250.0	NM_144806	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27929490-4	chr7	27928983	27929983	+	960.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028538)	promoter-TSS (NM_028538)	-53.0	NM_028538	73430.0	Mm.379224	NM_028538	ENSMUSG00000070709	Zfp974	1700049G17Rik|AV321011|BB026409	zinc finger protein 974	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80203730-4	chr7	80203219	80204219	+	960.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	5278.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	7.5	9.5	5.5	1.0	3.5	5.0
Merged-chr8-84567200-3	chr8	84566682	84567682	+	960.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252060, intron 20 of 47)	intron (NM_001252060, intron 20 of 47)	95670.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	1.5	1.5	1.0	9.0	16.0	33.5
Merged-chr9-62977400-4	chr9	62976899	62977899	+	960.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 1 of 13)	intron (NM_019663, intron 1 of 13)	3480.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55488808-4	chr4	55488306	55489306	+	960.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16B|LTR|ERVL	43669.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	3.5	10.5	1.5	2.0	10.0	2.0
Merged-chr13-54207249-4	chr13	54206740	54207740	+	960.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153432, intron 1 of 3)	intron (NR_153432, intron 1 of 3)	15107.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	5.5	1.5	7.5	0.0	12.0	2.0
Merged-chr17-13898037-4	chr17	13897550	13898550	+	960.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151731, intron 31 of 33)	intron (NR_151731, intron 31 of 33)	-50323.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5566251-4	chr17	5565749	5566749	+	960.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	MTE2a|LTR|ERVL-MaLR	73649.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3904154-2	chr19	3903654	3904654	+	960.857178	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136091, intron 3 of 19)	intron (NM_001136091, intron 3 of 19)	1076.0	NM_016921	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-117462252-4	chr6	117461773	117462773	+	960.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32962.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102414100-2	chr11	102413600	102414600	+	960.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-6583.0	NM_026542	68066.0	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5589139-4	chr17	5588624	5589624	+	960.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	96524.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91062581-4	chr1	91062077	91063077	+	960.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	9133.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84935766-4	chr10	84935285	84936285	+	960.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013441, intron 2 of 8)	intron (NM_001013441, intron 2 of 8)	18172.0	NM_183172	237422.0	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49997430-3	chr11	49996930	49997930	+	960.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-27901.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99364679-3	chr5	99364167	99365167	+	960.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-111740.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	30.5	46.5	49.5	27.0	49.0	52.5
Merged-chr18-32353310-4	chr18	32352862	32353862	+	960.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-23855.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-38814144-3	chr12	38813668	38814668	+	960.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163154, intron 2 of 9)	intron (NM_001163154, intron 2 of 9)	30457.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41505878-3	chr13	41505348	41506348	+	960.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18488.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59393366-4	chr2	59392861	59393861	+	960.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-6679.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106155302-4	chr8	106154808	106155808	+	960.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357319, intron 2 of 5)	intron (NM_001357319, intron 2 of 5)	4954.0	NM_001357319	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61132958-4	chr18	61132440	61133440	+	960.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134134, intron 20 of 20)	intron (NM_134134, intron 20 of 20)	15472.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-94513002-4	chr9	94512487	94513487	+	960.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	25094.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	30.0	47.0	27.0	30.0	47.5	27.0
Merged-chr12-86887770-4	chr12	86887265	86888265	+	960.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2951.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3519508-4	chr2	3519040	3520040	+	960.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177647, intron 2 of 3)	intron (NM_177647, intron 2 of 3)	6475.0	NM_177647	227526.0	Mm.211455	NM_177647	ENSMUSG00000039496	Cdnf	9330140G23|Armetl1	cerebral dopamine neurotrophic factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129301512-3	chr2	129301133	129302133	+	960.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010554, intron 6 of 6)	intron (NM_010554, intron 6 of 6)	4263.0	NR_040371	100503468.0	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	-	predicted gene 14023	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79172599-4	chr3	79172113	79173113	+	960.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26738.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	58.5	157.5	110.0	79.5	169.5	79.5
Merged-chr3-88664306-4	chr3	88663791	88664791	+	960.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	-11149.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73621861-2	chr7	73621361	73622361	+	960.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-63466.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102037705-4	chr5	102037180	102038180	+	960.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	32241.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	29.5	59.0	48.0	25.0	52.5	48.5
Merged-chr12-101718196-2	chr12	101717696	101718696	+	960.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082976, intron 1 of 11)	CpG	327.0	NM_001082976	74413.0	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding	0.0	1.0	3.5	1.5	0.0	2.0
Merged-chr8-54507918-4	chr8	54507425	54508425	+	960.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22073.0	NM_029701	76687.0	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik|SPC22/23	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25736799-4	chr14	25736301	25737301	+	960.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 2 of 3)	intron (NM_001101433, intron 2 of 3)	32055.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55386622-4	chr11	55386136	55387136	+	960.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33444.0	NM_009242	20692.0	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53904033-4	chr19	53903509	53904509	+	960.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168491, intron 1 of 11)	CpG	658.0	NM_001168491	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157138307-7	chr2	157137823	157138823	+	960.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3101.0	NM_018851	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128411100-4	chr7	128410530	128411530	+	960.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 1 of 4)	intron (NM_026418, intron 1 of 4)	7142.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100145328-4	chr13	100144834	100145834	+	960.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126182, intron 15 of 15)	intron (NM_001126182, intron 15 of 15)	20479.0	NM_011420	20595.0	Mm.2025	NM_011420	ENSMUSG00000021645	Smn1	AI849087|Gemin1|Smn	survival motor neuron 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120887896-4	chr4	120887403	120888403	+	960.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182929, intron 5 of 7)	intron (NM_182929, intron 5 of 7)	33104.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	9.0	1.0	11.0	8.5	6.0	5.5
Merged-chr17-49384455-3	chr17	49383966	49384966	+	960.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43898.0	NM_028464	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	0.0	0.5	1.5	0.0	0.5	1.5
Merged-chr14-33194421-4	chr14	33193938	33194938	+	960.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9372.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76324820-3	chr12	76324324	76325324	+	960.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001101471)	promoter-TSS (NM_001101471)	-67.0	NM_001101471	238276.0	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85465094-4	chr12	85464594	85465594	+	960.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8796.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80612103-3	chr18	80611651	80612651	+	960.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 9 of 9)	intron (NM_198429, intron 9 of 9)	-67605.0	NR_028424	100039348.0	Mm.254722	NR_028424		Gm2176	A430076E10Rik	glucosamine-6-phosphate deaminase 1 pseudogene	pseudo	5.5	9.0	2.0	2.5	10.0	4.0
Merged-chr16-35932377-4	chr16	35931894	35932894	+	960.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001013371, exon 3 of 5)	exon (NM_001013371, exon 3 of 5)	-6076.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	4.0	6.0	6.0	0.0	0.0	0.5
Merged-chr17-44736228-3	chr17	44735743	44736743	+	960.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271630)	promoter-TSS (NM_001271630)	-67.0	NM_001271631	12393.0	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34709773-3	chr13	34709280	34710280	+	960.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29862.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152511457-4	chr1	152510947	152511947	+	960.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177756)	TTS (NM_177756)	111580.0	NM_177756	269132.0	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-166349948-3	chr1	166349468	166350468	+	960.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-29199.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108341327-3	chr6	108340829	108341829	+	960.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 5 of 61)	intron (NM_010585, intron 5 of 61)	128233.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	3.0	1.0	3.0	1.0	28.0	11.5
Merged-chr17-47851073-2	chr17	47850573	47851573	+	960.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16382.0	NM_001109973	17240.0	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	2.0	0.0	1.0	0.5	0.0	1.5
Merged-chr16-91841628-4	chr16	91841135	91842135	+	960.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 19 of 28)	intron (NM_001110275, intron 19 of 28)	89995.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68430686-4	chr11	68430197	68431197	+	960.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1428.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100543902-4	chr15	100543374	100544374	+	960.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355497, intron 2 of 15)	IAPEY3-int|LTR|ERVK	8134.0	NM_033476	21422.0	Mm.219040	NM_033476	ENSMUSG00000009733	Tfcp2	CP-2|CP2|D230015P20Rik|LBP-1c|LBP-1d|LBP1|LSF|Tcfcp2|UBP-1	transcription factor CP2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150844926-4	chr2	150844389	150845389	+	960.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 4 of 12)	intron (NR_151505, intron 4 of 12)	-2319.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103514260-4	chr15	103513753	103514753	+	960.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285890)	promoter-TSS (NM_001285890)	-724.0	NM_001285890	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	3.0	1.0	1.5	2.0	1.0	2.0
Merged-chr3-115766362-4	chr3	115765855	115766855	+	960.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51300.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	3.5	2.5	5.0	6.5	0.0	1.5
Merged-chr5-117159980-4	chr5	117159490	117160490	+	960.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	26402.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	99.0	160.5	150.0	45.0	156.0	107.5
Merged-chr9-116384371-4	chr9	116383869	116384869	+	960.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	195189.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-35120315-4	chr4	35119807	35120807	+	960.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-31748.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57777227-4	chr10	57776710	57777710	+	960.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7713.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55797453-4	chr4	55796958	55797958	+	960.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-264983.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77832789-4	chr15	77832294	77833294	+	960.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	9381.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135914395-4	chr5	135913898	135914898	+	960.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018871, intron 1 of 1)	intron (NM_018871, intron 1 of 1)	20243.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84424059-3	chr10	84423549	84424549	+	960.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 1 of 6)	intron (NM_001004363, intron 1 of 6)	16422.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145277068-4	chr6	145276571	145277571	+	960.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26519.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	110.0	202.0	175.0	128.5	334.0	258.0
Merged-chr3-32297440-4	chr3	32296942	32297942	+	960.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68047.0	NR_027966	67576.0	Mm.435324	NR_027966		4930429B21Rik	-	RIKEN cDNA 4930429B21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37751719-4	chr13	37751208	37752208	+	960.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74330.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	6.5	24.0	25.0	7.0	37.5	24.5
Merged-chr10-94122278-4	chr10	94121776	94122776	+	960.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 9 of 20)	intron (NM_053072, intron 9 of 20)	-25655.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	40.5	107.0	53.5	33.0	56.0	30.5
Merged-chr19-14387933-4	chr19	14387394	14388394	+	960.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48056.0	NR_152176	667433.0	Mm.128913	NR_152176		Gm8630	EG667433	predicted gene 8630	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102040309-4	chr11	102039807	102040807	+	960.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1204.0	NM_001160711	52685.0	Mm.266885	NM_027987	ENSMUSG00000017309	Cd300lg	2310016B05Rik|Clm9|D11Ertd736e	CD300 molecule like family member G	protein-coding	0.0	0.0	1.0	1.5	0.0	0.0
Merged-chr14-46883617-4	chr14	46883066	46884066	+	960.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 1 of 12)	CpG	601.0	NM_001037221	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	27.5	97.5	66.0	16.5	49.0	37.5
Merged-chr8-4404415-3	chr8	4403922	4404922	+	960.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	54834.0	NM_009138	20300.0	Mm.7275	NM_009138	ENSMUSG00000023235	Ccl25	A130072A22Rik|AI852536|CKb15|Scya25|TECK	chemokine (C-C motif) ligand 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35269851-4	chr7	35269319	35270319	+	960.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B2|LTR|ERVK	48621.0	NM_026181	67471.0	Mm.358705	NM_026181	ENSMUSG00000063808	Gpatch1	1300003A17Rik|ECGP|Gpatc1	G patch domain containing 1	protein-coding	0.0	3.0	3.5	0.0	5.5	3.5
Merged-chr4-121016055-4	chr4	121015559	121016559	+	960.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	1188.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	1.0	28.5	12.0	6.0	26.0	15.0
Merged-chr5-122268198-4	chr5	122267685	122268685	+	960.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3725.0	NM_001039153	654470.0	Mm.28804	NM_001039153	ENSMUSG00000038593	Tctn1	G730031O11Rik|Tect1	tectonic family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107548503-2	chr11	107548003	107549003	+	960.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198298, intron 1 of 31)	intron (NM_198298, intron 1 of 31)	543.0	NM_198298	78455.0	Mm.272047	NM_198298	ENSMUSG00000020721	Helz	3110078M01Rik|9430093I07Rik|9630002H22Rik|AI851979|DRHC	helicase with zinc finger domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65288386-2	chr9	65287886	65288886	+	960.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-5874.0	NM_011802	270166.0	Mm.30088	NM_011802	ENSMUSG00000015357	Clpx	AU014732|E330029I21	caseinolytic mitochondrial matrix peptidase chaperone subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-103336888-4	chr12	103336413	103337413	+	960.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 3 of 9)	intron (NM_023049, intron 3 of 9)	19088.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50887911-2	chr15	50887411	50888411	+	960.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_032000, intron 1 of 5)	intron (NM_032000, intron 1 of 5)	1138.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	13.5	17.5	17.5	28.5	30.5	19.0
Merged-chr11-101087970-2	chr11	101087470	101088470	+	960.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159384, intron 2 of 6)	intron (NM_001159384, intron 2 of 6)	680.0	NM_001159384	21428.0	Mm.628	NM_011550	ENSMUSG00000017801	Mlx	Tcfl4|Tf4|bHLHd13	MAX-like protein X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103177815-2	chr11	103177315	103178315	+	960.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019679, intron 1 of 26)	intron (NM_019679, intron 1 of 26)	6677.0	NM_019679	57778.0	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30679243-2	chr5	30678743	30679743	+	960.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B2|LTR|ERVL	12357.0	NR_126074	12615.0	Mm.290563	NM_007681	ENSMUSG00000029177	Cenpa	Cenp-A	centromere protein A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146245912-2	chr5	146245412	146246412	+	960.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153599, intron 1 of 12)	intron (NM_153599, intron 1 of 12)	14662.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-89034715-2	chr11	89034215	89035215	+	960.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	26033.0	NM_019505	56077.0	Mm.153695	NM_019505	ENSMUSG00000000276	Dgke	C87606|DAGK6|DGK	diacylglycerol kinase, epsilon	protein-coding	11.5	12.0	13.5	3.0	11.5	1.5
Merged-chr18-65694343-2	chr18	65693905	65694905	+	960.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3863.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	146.5	268.0	201.5	138.5	256.5	235.0
Merged-chr10-91154123-4	chr10	91153664	91154664	+	960.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080129, intron 4 of 8)	intron (NM_001080129, intron 4 of 8)	16386.0	NM_001283048	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	1.0	5.0	0.5	0.5	2.0	0.5
Merged-chr16-75856154-2	chr16	75855654	75856654	+	960.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	53112.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23718075-4	chr13	23717575	23718575	+	960.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7221.0	NM_010424	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	20.5	50.5	23.5	5.5	70.0	36.0
Merged-chr16-91059541-2	chr16	91059041	91060041	+	960.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163695, intron 1 of 1)	MLT1K|LTR|ERVL-MaLR	9604.0	NM_001163695	74387.0	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117870618-2	chr4	117870118	117871118	+	960.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034876, intron 4 of 7)	intron (NM_001034876, intron 4 of 7)	1852.0	NM_001034876	381546.0	Mm.440118	NM_001034876	ENSMUSG00000078588	Ccdc24	Gm1028	coiled-coil domain containing 24	protein-coding	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46060534-2	chr11	46060034	46061034	+	960.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009616, intron 1 of 22)	L2a|LINE|L2	4550.0	NM_001291891	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44509637-2	chr9	44509137	44510137	+	960.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_030256, exon 9 of 9)	exon (NM_030256, exon 9 of 9)	10501.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101657401-4	chr4	101656888	101657888	+	960.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175036, intron 3 of 3)	(A)n|Simple_repeat|Simple_repeat	9605.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	107.5	250.5	139.5	83.5	167.0	181.5
Merged-chr17-24708041-2	chr17	24707534	24708534	+	960.5	f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_145396)	promoter-TSS (NM_145396)	-381.0	NM_145396	213773.0	Mm.100353	NM_145396	ENSMUSG00000040688	Tbl3	9430070M15Rik	transducin (beta)-like 3	protein-coding	170.0	290.0	245.5	78.5	164.5	103.0
Merged-chr8-120502571-2	chr8	120502071	120503071	+	960.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	13705.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-43319901-2	chr14	43319401	43320401	+	960.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27910.0	NM_027940	71826.0	Mm.335855	NM_027940	ENSMUSG00000095384	1700001F09Rik	Gm10377	RIKEN cDNA 1700001F09 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-109703185-2	chr7	109702685	109703685	+	960.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020616)	promoter-TSS (NM_020616)	-552.0	NM_020616	57373.0	Mm.334138	NM_020616	ENSMUSG00000031023	Akip1	BCA3|C11orf17|D7H11orf17|D930014E17Rik|ICRFP703B1614Q5.6|ORF27	A kinase (PRKA) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106888512-2	chr9	106888012	106889012	+	960.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029103, exon 4 of 4)	3' UTR (NM_029103, exon 4 of 4)	-1512.0	NM_175402	109095.0	Mm.431589	NM_175402	ENSMUSG00000074102	Rbm15b	1810017N16Rik	RNA binding motif protein 15B	protein-coding	4.0	24.0	12.0	1.5	5.0	16.5
Merged-chr11-119057020-4	chr11	119056458	119057458	+	960.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16045.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7383712-2	chr19	7383212	7384212	+	960.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167831)	promoter-TSS (NM_001167831)	-686.0	NM_001167831	68229.0	Mm.34766	NM_001033139	ENSMUSG00000024970	Spindoc	1700105P06Rik|AI846148|SPIN-DOC	spindlin interactor and repressor of chromatin binding	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-44614209-3	chr17	44613702	44614702	+	960.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271627, intron 6 of 7)	intron (NM_001271627, intron 6 of 7)	121974.0	NR_073425	12393.0	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32187345-4	chr4	32186873	32187873	+	960.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	223266.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	18.0	12.5	21.0	10.0	25.0	17.5
Merged-chr1-74053290-4	chr1	74052800	74053800	+	960.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289895, intron 3 of 32)	intron (NM_001289895, intron 3 of 32)	71147.0	NM_027884	21961.0	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145801078-3	chr6	145800581	145801581	+	960.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7302.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-95381214-4	chr1	95380711	95381711	+	960.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	UCON29|DNA|PiggyBac?	67583.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120977993-4	chr10	120977496	120978496	+	960.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081193, exon 1 of 13)	exon (NM_001081193, exon 1 of 13)	1334.0	NM_001081193	380664.0	Mm.339371	NM_001081193	ENSMUSG00000048661	Lemd3	AI316861|Man1	LEM domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51417952-4	chr13	51417453	51418453	+	960.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010101, intron 1 of 1)	intron (NM_010101, intron 1 of 1)	9335.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-24700626-4	chr1	24700118	24701118	+	960.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026719, intron 3 of 15)	intron (NM_026719, intron 3 of 15)	21700.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-87325642-4	chr12	87325148	87326148	+	960.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011479, intron 9 of 11)	intron (NM_011479, intron 9 of 11)	-25943.0	NM_001290302	217738.0	Mm.219363	NM_001290302	ENSMUSG00000050671	Ism2	Gm264|Thsd3	isthmin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146125021-4	chr6	146124511	146125511	+	960.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 55 of 56)	intron (NM_019923, intron 55 of 56)	190889.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124928559-4	chr2	124928064	124929064	+	960.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139563.0	NM_175034	317750.0	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24165737-4	chr16	24165242	24166242	+	960.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83052.0	NR_155457	108168278.0	Mm.417246	NR_155457		Gm46545	-	predicted gene, 46545	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17767102-3	chr10	17766603	17767603	+	960.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29116.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	4.0	5.0	1.0	13.0	27.5	18.5
Merged-chr16-4584715-3	chr16	4584195	4585195	+	960.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-10018.0	NM_031184	83396.0	Mm.134072	NM_031184	ENSMUSG00000014303	Glis2	Gli5|Klf16|Nkl	GLIS family zinc finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3926833-3	chr8	3926334	3927334	+	960.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026972)	promoter-TSS (NM_026972)	7.0	NM_001037800	69165.0	Mm.175163	NM_026972	ENSMUSG00000065987	Cd209b	1810030I22Rik|DC-SIGNR1|OtB7|SIGNR1|mSIGNR1	CD209b antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9612035-4	chr4	9611536	9612536	+	960.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 3 of 22)	intron (NM_001290367, intron 3 of 22)	31681.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	4.5	4.5	1.0	1.0	0.0	0.5
Merged-chr2-122452698-4	chr2	122452220	122453220	+	960.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356532, intron 10 of 17)	ID_B1|SINE|B4	11900.0	NM_001356532	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	29.5	24.5	22.0	36.0	38.5	39.5
Merged-chr3-144699790-4	chr3	144699301	144700301	+	960.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019464, intron 5 of 8)	intron (NM_019464, intron 5 of 8)	20534.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47621710-4	chr19	47621204	47622204	+	960.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164639, intron 9 of 17)	intron (NM_001164639, intron 9 of 17)	41685.0	NM_001164639	20874.0	Mm.281011	NM_009289	ENSMUSG00000025060	Slk	9A2|AV021402|AW411554|Etk4|SMAK|Stk2|mKIAA0204|mSLK	STE20-like kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4410089-4	chr7	4409601	4410601	+	960.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR15|LTR|ERVK	-12357.0	NM_001163014	243816.0	Mm.248662	NM_001163014	ENSMUSG00000078810	Gp6	9830166G18Rik|Gm469|Gpvi	glycoprotein 6 (platelet)	protein-coding	16.5	18.5	5.5	4.5	10.5	7.5
Merged-chr10-118768002-4	chr10	118767497	118768497	+	960.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100906.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	2.0	0.5	2.0	2.0	0.0	1.0
Merged-chr16-22015782-4	chr16	22015288	22016288	+	960.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027488, intron 3 of 16)	intron (NR_027488, intron 3 of 16)	6304.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98572982-4	chr10	98572459	98573459	+	960.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR78|LTR|ERV1	-221092.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-12934118-4	chr2	12933610	12934610	+	960.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008961, intron 1 of 4)	intron (NM_008961, intron 1 of 4)	10069.0	NM_001305437	19212.0	Mm.229322	NM_008961	ENSMUSG00000026730	Pter	AI790318|Mpr56-1	phosphotriesterase related	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58544229-4	chr13	58543752	58544752	+	960.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66625.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80172210-2	chr10	80171710	80172710	+	960.416626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027207)	promoter-TSS (NM_027207)	-734.0	NM_027207	69770.0	Mm.302754	NM_027207	ENSMUSG00000035595	1600002K03Rik	-	RIKEN cDNA 1600002K03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35739752-4	chr16	35739252	35740252	+	960.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 2 of 8)	intron (NM_153550, intron 2 of 8)	29604.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	3.5	16.0	11.0	3.0	12.5	6.5
Merged-chr5-20969177-4	chr5	20968681	20969681	+	960.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17359.0	NM_001080977	242860.0	Mm.254286	NM_001080977	ENSMUSG00000039968	Rsbn1l	8430412F05Rik|AI447441|C330002G24Rik	round spermatid basic protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87982994-3	chr3	87982498	87983498	+	960.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11905.0	NM_016701	18008.0	Mm.331129	NM_016701	ENSMUSG00000004891	Nes	AA166324|C78523|ESTM46|Ifaprc2|Marc2|RC2	nestin	protein-coding	1.0	13.5	0.0	0.0	7.0	0.0
Merged-chr12-84969141-3	chr12	84968665	84969665	+	960.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178065, intron 1 of 19)	intron (NM_178065, intron 1 of 19)	1721.0	NM_178065	68497.0	Mm.24446	NM_178065	ENSMUSG00000042350	Arel1	1110018G07Rik|AI649076|AW610792|Kiaa0317|mKIAA0317	apoptosis resistant E3 ubiquitin protein ligase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-4903606-3	chr6	4903137	4904137	+	960.380981	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 1 of 15)	CpG	317.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50898186-4	chr14	50897688	50898688	+	960.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4933.0	NM_001166651	546611.0	Mm.390692	NM_001166651	ENSMUSG00000090799	Klhl33	EG546611	kelch-like 33	protein-coding	4.5	18.5	19.5	2.0	21.0	18.5
Merged-chr14-33057739-4	chr14	33057254	33058254	+	960.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146022, intron 36 of 58)	intron (NM_001146022, intron 36 of 58)	66372.0	NM_026253	67580.0	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83058936-4	chr11	83058424	83059424	+	960.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-6188.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164085895-4	chr2	164085396	164086396	+	960.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021420, intron 3 of 10)	intron (NM_021420, intron 3 of 10)	11718.0	NM_021420	58231.0	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5882174-4	chr19	5881662	5882662	+	960.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134154, intron 4 of 5)	intron (NM_134154, intron 4 of 5)	4340.0	NM_001361974	107375.0	Mm.5323	NM_134154	ENSMUSG00000024818	Slc25a45	AW491445	solute carrier family 25, member 45	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20885700-4	chr14	20885203	20886203	+	960.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43695.0	NM_009502	22330.0	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125638980-4	chr7	125638484	125639484	+	960.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35555.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	4.5	10.5	10.0	3.5	11.0	14.5
Merged-chr7-19458213-4	chr7	19457759	19458759	+	960.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172279, intron 1 of 16)	CpG	235.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82716906-2	chr18	82716406	82717406	+	960.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-3375.0	NR_039572	100628586.0		NR_039572	ENSMUSG00000092638	Mir5112	mmu-mir-5112|mu-mir-5112	microRNA 5112	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97501194-2	chr6	97500694	97501694	+	960.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	B2_Mm2|SINE|B2	-13374.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	2.0	4.0	0.0	0.5
Merged-chr18-6107971-4	chr18	6107459	6108459	+	960.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039692, intron 3 of 18)	intron (NM_001039692, intron 3 of 18)	28139.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	19.5	21.0	22.5	14.0	32.5	17.5
Merged-chr6-38892251-4	chr6	38891748	38892748	+	960.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16058.0	NM_001294143	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51839808-3	chr13	51839309	51840309	+	960.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6866.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-5860926-3	chr5	5860430	5861430	+	960.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-111613.0	NM_027399	70358.0	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74924099-3	chr15	74923590	74924590	+	960.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30961.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	12.0	72.5	44.5	79.5	182.0	97.0
Merged-chr13-60594443-4	chr13	60593936	60594936	+	960.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-7511.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145599422-4	chr6	145598895	145599895	+	960.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16568.0	NM_009449	22147.0	Mm.270295	NM_009449	ENSMUSG00000067338	Tuba3b	M[a]7|Tuba7	tubulin, alpha 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141157633-4	chr4	141157041	141158041	+	960.3273929999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172518, intron 1 of 9)	B1F|SINE|Alu	9619.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-59241754-4	chr3	59241265	59242265	+	960.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 20 of 43)	intron (NM_177855, intron 20 of 43)	21220.0	NM_027571	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	13.5	7.0	15.0	16.0	18.0	4.5
Merged-chr19-32651244-4	chr19	32650731	32651731	+	960.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011864, intron 8 of 12)	intron (NM_011864, intron 8 of 12)	31226.0	NM_011864	23972.0	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6391729-4	chr11	6391216	6392216	+	960.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3409.0	NM_001005867	52915.0	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69245878-4	chr11	69245403	69246403	+	960.30835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8881.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117326419-4	chr11	117325907	117326907	+	960.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-5308.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6209752-4	chr4	6209244	6210244	+	960.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026534, intron 6 of 7)	L3|LINE|CR1	18639.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109120926-4	chr4	109120427	109121427	+	960.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355190, intron 2 of 21)	L1MC1|LINE|L1	-2891.0	NM_001134791	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-56286831-3	chr8	56286311	56287311	+	960.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7741.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4560765-4	chr16	4560258	4561258	+	960.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1038.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42146424-4	chr19	42145920	42146920	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183195)	promoter-TSS (NM_183195)	-969.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25139005-4	chr17	25138492	25139492	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317404, intron 1 of 24)	B4|SINE|B4	2361.0	NM_001317404	26373.0	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	37.0	120.0	46.5	19.0	67.0	53.5
Merged-chr10-39258511-4	chr10	39258025	39259025	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-94731.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8974012-4	chr3	8973523	8974523	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-9877.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	26.0	88.5	60.5	27.5	53.0	39.0
Merged-chr2-36235092-4	chr2	36234591	36235591	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 2 of 10)	intron (NM_008969, intron 2 of 10)	4665.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97373378-4	chr15	97372917	97373917	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 4 of 5)	intron (NM_172293, intron 4 of 5)	-126130.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24090518-3	chr10	24090033	24091033	+	960.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001010837)	TTS (NM_001010837)	1761.0	NM_001010837	382348.0	Mm.377897	NM_001010837	ENSMUSG00000100186	Taar8b	Gm1149|taR-8b	trace amine-associated receptor 8B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-137570907-4	chr6	137570423	137571423	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271595)	promoter-TSS (NM_001271595)	86.0	NM_001271595	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-14017904-4	chr10	14017394	14018394	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	51515.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	11.5	13.0	0.5	0.0	8.5	0.5
Merged-chr4-47262188-4	chr4	47261677	47262677	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 9 of 39)	intron (NM_009928, intron 9 of 39)	54165.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4112346-4	chr19	4111829	4112829	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_075078, exon 22 of 24)	non-coding (NR_075078, exon 22 of 24)	9246.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67599546-4	chr10	67599025	67600025	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER58A|DNA|hAT-Charlie	-27566.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99053047-4	chr7	99052550	99053550	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 6 of 14)	RLTR25B|LTR|ERVK	88094.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0.0	3.0	1.5	0.5	1.5	1.5
Merged-chr3-88592895-4	chr3	88592432	88593432	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13324.0	NM_025448	66256.0	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|SSR-beta|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	7.0	10.0	5.5	3.5	24.5	19.5
Merged-chr5-117138740-4	chr5	117138222	117139222	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	5134.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	12.0	14.5	12.0	12.0	14.0	13.0
Merged-chr4-115835717-4	chr4	115835201	115836201	+	960.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175308, exon 4 of 4)	3' UTR (NM_175308, exon 4 of 4)	-3497.0	NM_001285488	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	2.5	1.0	6.5	5.0	3.0	11.0
Merged-chr17-34364839-4	chr17	34364349	34365349	+	960.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_079835, intron 6 of 8)	intron (NM_079835, intron 6 of 8)	10027.0	NM_079835	547431.0	Mm.441007	NM_079835	ENSMUSG00000024340	Btnl2	BTL-II|BTLN2|Btl2|Gm315|NG9	butyrophilin-like 2	protein-coding	126.5	278.0	184.0	99.0	188.5	124.0
Merged-chr2-18903841-4	chr2	18903301	18904301	+	960.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355149, intron 3 of 10)	intron (NM_001355149, intron 3 of 10)	94320.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109420956-4	chr4	109420445	109421445	+	960.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145948, intron 2 of 17)	intron (NM_001145948, intron 2 of 17)	5298.0	NM_001145948	230603.0	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-21938238-4	chr3	21937731	21938731	+	960.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138421.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	12.0	4.0	1.5	0.0	9.0
Merged-chr8-110619373-4	chr8	110618870	110619870	+	960.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151675, intron 1 of 17)	intron (NR_151675, intron 1 of 17)	803.0	NR_151675	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	12.0	25.0	9.5	6.5	15.0	13.0
Merged-chr7-143465117-4	chr7	143464618	143465618	+	960.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4068.0	NM_001161624	12577.0	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67458084-4	chr7	67457561	67458561	+	960.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	-85203.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	41.0	43.0	53.0	7.0	25.5	28.0
Merged-chr7-98106790-4	chr7	98106277	98107277	+	960.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008663, intron 3 of 48)	intron (NM_008663, intron 3 of 48)	2471.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	8.0	11.0	21.5	7.5	14.0	5.0
Merged-chr8-70601429-4	chr8	70600938	70601938	+	960.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133772, intron 4 of 16)	CpG	6876.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	14.5	42.5	25.0	8.5	24.5	16.0
Merged-chr10-61267582-4	chr10	61267071	61268071	+	960.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081127, intron 2 of 21)	intron (NM_001081127, intron 2 of 21)	5867.0	NM_001081127	237360.0	Mm.333252	NM_001081127	ENSMUSG00000059901	Adamts14	Adamts-14|TS14	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45971302-4	chr13	45970806	45971806	+	960.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6315.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171559012-4	chr1	171558495	171559495	+	960.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018729)	promoter-TSS (NM_018729)	-198.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	0.0	8.5	11.0	2.0	3.0	7.0
Merged-chr7-27545235-4	chr7	27544723	27545723	+	960.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011116, exon 2 of 14)	5' UTR (NM_011116, exon 2 of 14)	7995.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-12050687-3	chr11	12050167	12051167	+	960.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13247.0	NM_010345	14783.0	Mm.273117	NM_010345	ENSMUSG00000020176	Grb10	5730571D09Rik|AI325020|Meg1|mKIAA0207	growth factor receptor bound protein 10	protein-coding	6.5	2.5	1.5	2.0	0.0	0.0
Merged-chr4-119663627-3	chr4	119663133	119664133	+	960.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-4688.0	NM_008191	14916.0	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101963959-6	chr11	101963474	101964474	+	960.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_024449, exon 2 of 2)	exon (NM_024449, exon 2 of 2)	3041.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47503972-2	chr17	47503472	47504472	+	960.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-1079.0	NM_001081636	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163750075-5	chr2	163749550	163750550	+	960.161926	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001272052, intron 1 of 11)	CpG	189.0	NM_007398	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101936124-4	chr7	101935623	101936623	+	960.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR4_MM-int|LTR|ERV1	-2266.0	NM_001162974	69358.0	Mm.214841	NM_027053	ENSMUSG00000064307	Lrrc51	1700008D07Rik|Lrtomt	leucine rich repeat containing 51	protein-coding	0.5	11.0	6.5	0.0	10.0	6.0
Merged-chr4-126430480-4	chr4	126429974	126430974	+	960.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153402)	promoter-TSS (NM_153402)	-932.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72615374-4	chr6	72614946	72615946	+	960.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009443, intron 2 of 3)	intron (NM_009443, intron 2 of 3)	1302.0	NM_009444	22135.0	Mm.246563	NM_009444		Tgoln2	TGN38B|TGN41|TGN46|Ttgn2	trans-golgi network protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43556116-4	chr4	43555631	43556631	+	960.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011602, intron 3 of 56)	intron (NM_011602, intron 3 of 56)	6452.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	7.0	3.5	10.0	4.0	4.0	10.0
Merged-chr6-38901372-4	chr6	38900877	38901877	+	960.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17609.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36699733-4	chr18	36699243	36700243	+	960.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3818.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	2.5	1.5	4.5	1.0	5.5	9.0
Merged-chr13-58622822-3	chr13	58622316	58623316	+	960.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11939.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29130260-3	chr2	29129737	29130737	+	960.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198033, exon 4 of 26)	exon (NM_198033, exon 4 of 26)	5245.0	NM_198033	269254.0	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25813763-3	chr17	25813268	25814268	+	960.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164225, intron 1 of 5)	intron (NM_001164225, intron 1 of 5)	4683.0	NM_001164225	214931.0	Mm.152289	NM_001164225	ENSMUSG00000025738	Fbxl16	BC042620|Scirr1	F-box and leucine-rich repeat protein 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69416015-6	chr11	69415530	69416530	+	960.0912480000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2355.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73038682-4	chr17	73038168	73039168	+	960.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	-69317.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-116011876-4	chr5	116011378	116012378	+	960.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12550.0	NM_031869	19079.0	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	9.0	3.0	5.0	4.5	22.0	11.5
Merged-chr6-48841413-4	chr6	48840919	48841919	+	960.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164209)	promoter-TSS (NM_001164209)	-45.0	NM_001164208	65963.0	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76948903-4	chr12	76948435	76949435	+	960.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361663, intron 3 of 4)	intron (NM_001361663, intron 3 of 4)	13313.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90251716-4	chr3	90251245	90252245	+	960.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013901, exon 4 of 4)	exon (NM_013901, exon 4 of 4)	-2113.0	NR_151631	74343.0	Mm.35627	NM_028881	ENSMUSG00000027936	Crtc2	4632407F12Rik|Torc2	CREB regulated transcription coactivator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118868025-4	chr9	118867520	118868520	+	960.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 9 of 13)	intron (NM_001113514, intron 9 of 13)	-58516.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	45.0	139.5	101.5	62.0	137.0	149.0
Merged-chr15-84987378-5	chr15	84986885	84987885	+	960.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	586.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103003398-4	chr11	103002911	103003911	+	960.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026551, intron 1 of 4)	intron (NM_026551, intron 1 of 4)	-3490.0	NR_105896	102466988.0		NR_105896	ENSMUSG00000098613	Mir6931	Gm27303|mmu-mir-6931	microRNA 6931	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-14641871-4	chr9	14641348	14642348	+	960.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21174.0	NR_152172	665374.0	Mm.387249	NR_152172	ENSMUSG00000111085	Gm7607	EG665374	predicted gene 7607	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108061546-4	chr3	108061056	108062056	+	960.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16697.0	NM_001160411	14865.0	Mm.31203	NM_026764	ENSMUSG00000027890	Gstm4	1110004G14Rik|GSTM7-7|Gstb-4|Gstb4	glutathione S-transferase, mu 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173062171-4	chr2	173061719	173062719	+	960.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40317.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-58304082-3	chr4	58303572	58304572	+	960.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037130, intron 5 of 12)	intron (NM_001037130, intron 5 of 12)	18110.0	NM_010944	18198.0	Mm.16148	NM_010944	ENSMUSG00000057280	Musk	Mdk4|Mlk|Nsk1|Nsk2|Nsk3	muscle, skeletal, receptor tyrosine kinase	protein-coding	2.0	0.0	2.5	2.0	0.0	2.5
Merged-chr6-124782699-4	chr6	124782205	124783205	+	960.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21A|LTR|ERV1	-2978.0	NM_001302555	16977.0	Mm.3207	NM_013588	ENSMUSG00000030125	Lrrc23	4921537K05Rik|B7|Lrpb7	leucine rich repeat containing 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48322545-4	chr17	48322044	48323044	+	960.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177083, intron 5 of 5)	intron (NM_177083, intron 5 of 5)	6382.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25834189-2	chr17	25833689	25834689	+	960.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019719)	promoter-TSS (NM_019719)	-828.0	NM_019719	56424.0	Mm.277599	NM_019719	ENSMUSG00000039615	Stub1	0610033N24Rik|2210017D18Rik|2310040B03Rik|AW046544|Chip	STIP1 homology and U-Box containing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89321408-2	chr3	89320908	89321908	+	960.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010108, intron 1 of 4)	CpG	1471.0	NM_010108	13638.0	Mm.331159	NM_010108	ENSMUSG00000028039	Efna3	AW494418|EFL-2|Ehk1-L|Epl3|LERK-3	ephrin A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-64692042-2	chr14	64691542	64692542	+	960.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081177, intron 2 of 39)	intron (NM_001081177, intron 2 of 39)	39511.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66177975-2	chr14	66177475	66178475	+	960.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 8 of 30)	intron (NM_001162366, intron 8 of 30)	35849.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41773814-3	chr19	41773310	41774310	+	960.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027667, intron 10 of 11)	MTD|LTR|ERVL-MaLR	26849.0	NR_040320	100502871.0	Mm.394485	NR_040320		Gm19424	-	predicted gene, 19424	ncRNA	211.0	400.5	242.0	102.0	196.0	170.5
Merged-chr3-95973074-2	chr3	95972574	95973574	+	960.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12436.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	13.0	10.5	2.0	13.0	11.0	2.0
Merged-chr15-93628153-2	chr15	93627653	93628653	+	960.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32262.0	NM_001033217	106042.0	Mm.150314	NM_001033217	ENSMUSG00000036158	Prickle1	1110058P22Rik|AW215793|Prickle|b2b019Clo|mpk1	prickle planar cell polarity protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31066590-2	chr6	31066090	31067090	+	960.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger1|DNA|TcMar-Tigger	-3497.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19714705-2	chr7	19714205	19715205	+	960.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109748, intron 1 of 8)	intron (NM_001109748, intron 1 of 8)	724.0	NM_001109748	53333.0	Mm.61682	NM_016871	ENSMUSG00000002984	Tomm40	AW539759|Mom35|Tom40	translocase of outer mitochondrial membrane 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-37144670-2	chr6	37144170	37145170	+	960.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 2 of 32)	intron (NM_001347104, intron 2 of 32)	155306.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113099715-2	chr5	113099215	113100215	+	960.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172884, intron 2 of 7)	intron (NM_172884, intron 2 of 7)	-18131.0	NM_001359009	12962.0	Mm.378899	NM_021352	ENSMUSG00000029352	Crybb3	AI852419	crystallin, beta B3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130248075-4	chr5	130247570	130248570	+	960.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023248, intron 4 of 4)	intron (NM_023248, intron 4 of 4)	7460.0	NM_023248	66711.0	Mm.280484	NM_023248	ENSMUSG00000025337	Sbds	4733401P19Rik|AI836084|CGI-97|SDS	SBDS ribosome maturation factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120575394-2	chr2	120574894	120575894	+	960.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009222, intron 1 of 7)	B3A|SINE|B2	7723.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	14.5	54.0	22.5	20.5	34.0	23.0
Merged-chr4-89349771-2	chr4	89349285	89350285	+	960.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_132431, intron 2 of 9)	intron (NR_132431, intron 2 of 9)	-38753.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	0.0	0.0	0.0	0.0	1.5	0.5
Merged-chr15-98894135-3	chr15	98893654	98894654	+	960.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007857, exon 3 of 3)	exon (NM_007857, exon 3 of 3)	4386.0	NM_007857	13363.0	Mm.324688	NM_007857	ENSMUSG00000023000	Dhh	C78960	desert hedgehog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-178350983-4	chr1	178350495	178351495	+	960.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13180.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88634498-2	chr5	88633998	88634998	+	960.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 10 of 13)	intron (NM_001359208, intron 10 of 13)	41082.0	NM_001098476	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	0.0	0.0	0.0	0.0	5.5	0.0
Merged-chr14-118147003-2	chr14	118146503	118147503	+	960.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021434, intron 2 of 8)	intron (NM_021434, intron 2 of 8)	9876.0	NM_021434	58245.0	Mm.275411	NM_021434	ENSMUSG00000022131	Gpr180	AB041545|E130016I23Rik|Itr	G protein-coupled receptor 180	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35705123-3	chr8	35704642	35705642	+	960.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-116122.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	2.5	0.0	0.0	3.5	6.5	4.0
Merged-chr3-133626818-4	chr3	133626289	133627289	+	960.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82399.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70024244-2	chr14	70023744	70024744	+	960.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 4 of 6)	B4A|SINE|B4	-53201.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61696058-3	chr10	61695557	61696557	+	960.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001272090, exon 1 of 4)	exon (NM_001272090, exon 1 of 4)	471.0	NR_073587	71767.0	Mm.71514	NM_027912	ENSMUSG00000020087	Tysnd1	1300019N10Rik	trypsin domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94944370-2	chr10	94943870	94944870	+	960.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_018797, exon 1 of 31)	exon (NM_018797, exon 1 of 31)	208.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-15269032-4	chr4	15268408	15269408	+	959.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181401, intron 1 of 2)	intron (NM_181401, intron 1 of 2)	3088.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105586903-4	chr5	105586408	105587408	+	959.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	67437.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35836385-4	chr17	35835880	35836880	+	959.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011655, intron 2 of 3)	intron (NM_011655, intron 2 of 3)	1921.0	NM_011655	22154.0	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	3.0	13.0	5.5	0.0	12.5	1.5
Merged-chr13-45600708-3	chr13	45600206	45601206	+	959.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 5 of 6)	ORR1F|LTR|ERVL-MaLR	93262.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66813085-4	chr15	66812571	66813571	+	959.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	18758.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22444551-3	chr16	22444058	22445058	+	959.93335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4988.0	NM_023794	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181598984-4	chr2	181598527	181599527	+	959.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172676, exon 1 of 5)	5' UTR (NM_172676, exon 1 of 5)	120.0	NM_172676	229011.0	Mm.205422	NM_172676	ENSMUSG00000038605	Samd10	D930033N23Rik|E130318E08	sterile alpha motif domain containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155762056-4	chr2	155761543	155762543	+	959.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10826.0	NM_011171	19124.0	Mm.3243	NM_011171	ENSMUSG00000027611	Procr	AI325044|Ccca|Ccd41|Epcr	protein C receptor, endothelial	protein-coding	25.5	97.0	50.5	24.0	81.0	65.0
Merged-chr16-24193508-4	chr16	24193007	24194007	+	959.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110817.0	NR_155457	108168278.0	Mm.417246	NR_155457		Gm46545	-	predicted gene, 46545	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86582366-4	chr11	86581874	86582874	+	959.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1784.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102381839-4	chr12	102381294	102382294	+	959.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 7 of 9)	MER63A|DNA|hAT-Blackjack	58019.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70437098-4	chr11	70436528	70437528	+	959.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145429, intron 6 of 14)	intron (NM_145429, intron 6 of 14)	-1227.0	NR_106064	102465670.0		NR_106064	ENSMUSG00000099109	Mir7115	Gm27902|mmu-mir-7115	microRNA 7115	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82765406-4	chr18	82764892	82765892	+	959.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6353.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-13565155-2	chr3	13564655	13565655	+	959.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357034, intron 1 of 7)	L1_Mus2|LINE|L1	87710.0	NR_040598	75203.0	Mm.490940	NR_040598		4930539N22Rik	-	RIKEN cDNA 4930539N22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105145921-4	chr5	105145411	105146411	+	959.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6325.0	NM_001359080	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	10.5	32.0	10.5	10.5	18.0	5.5
Merged-chr18-67324521-4	chr18	67324019	67325019	+	959.8916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033214, exon 2 of 4)	non-coding (NR_033214, exon 2 of 4)	-19045.0	NM_007702	12683.0	Mm.449	NM_007702	ENSMUSG00000024526	Cidea	AW212747	cell death-inducing DNA fragmentation factor, alpha subunit-like effector A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-57244355-3	chr12	57243843	57244843	+	959.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164370, intron 1 of 9)	intron (NM_001164370, intron 1 of 9)	13918.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64064991-3	chr7	64064472	64065472	+	959.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G3|LTR|ERVL-MaLR	-88863.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137857339-3	chr4	137856867	137857867	+	959.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4870.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	7.5	6.0	6.0	3.5	6.5	4.0
Merged-chr11-46035289-3	chr11	46034795	46035795	+	959.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER119|DNA|hAT-Charlie	-19207.0	NM_001291890	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	0.0	8.0	7.0	2.0	0.0	0.0
Merged-chr13-112602780-4	chr13	112602296	112603296	+	959.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145885, intron 18 of 21)	intron (NM_001145885, intron 18 of 21)	-22134.0	NM_139299	218624.0	Mm.380801	NM_139299	ENSMUSG00000050377	Il31ra	CRL3|GLM-R|GPL|Glmr|NR10	interleukin 31 receptor A	protein-coding	13.0	12.0	10.0	2.0	15.5	12.5
Merged-chr2-91723215-4	chr2	91722703	91723703	+	959.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6935.0	NM_172669	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	18.0	46.5	31.0	31.5	58.0	44.5
Merged-chr14-16248717-4	chr14	16248222	16249222	+	959.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362433)	promoter-TSS (NM_001362433)	454.0	NM_001359882	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	4.5	0.5	4.0	4.5	4.0	1.5
Merged-chr7-107668734-4	chr7	107668240	107669240	+	959.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357437, intron 1 of 23)	intron (NM_001357437, intron 1 of 23)	3262.0	NM_001357436	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45101956-4	chr13	45101426	45102426	+	959.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99830.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	6.5	13.0	3.0	2.5	5.0	9.0
Merged-chr13-107893227-2	chr13	107892727	107893727	+	959.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-3163.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44602917-2	chr9	44602417	44603417	+	959.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1975.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0.0	0.0	0.0	1.5	0.0	1.0
Merged-chr17-86970516-2	chr17	86970016	86971016	+	959.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	7405.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	3.0	7.0	6.0	0.0	6.0	0.0
Merged-chr13-45457544-3	chr13	45457003	45458003	+	959.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49941.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	2.5	15.5	6.0	5.0	8.5	8.0
Merged-chr11-94133547-4	chr11	94133120	94134120	+	959.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-77834.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10280747-2	chr19	10280247	10281247	+	959.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	24130.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87854786-3	chr1	87854227	87855227	+	959.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_136921)	promoter-TSS (NR_136921)	-428.0	NR_136921	100503175.0	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-133480667-4	chr2	133480174	133481174	+	959.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71485.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99349491-3	chr10	99348985	99349985	+	959.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86254.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115642848-2	chr11	115642348	115643348	+	959.819458	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14553.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97798266-4	chr7	97797768	97798768	+	959.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357364, intron 1 of 14)	L2c|LINE|L2	9727.0	NM_001357364	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	10.0	16.5	3.0	11.0	9.0	10.5
Merged-chr13-23712188-4	chr13	23711677	23712677	+	959.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1323.0	NM_010424	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	57.0	85.5	40.5	40.5	77.0	30.5
Merged-chr9-83562466-4	chr9	83561979	83562979	+	959.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	14141.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	37.5	83.0	79.0	33.0	93.0	59.5
Merged-chr13-44722216-4	chr13	44721724	44722724	+	959.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8550.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46828583-4	chr8	46828085	46829085	+	959.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008391, intron 6 of 8)	intron (NM_008391, intron 6 of 8)	88840.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25704907-4	chr7	25704418	25705418	+	959.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011577, exon 7 of 7)	exon (NM_011577, exon 7 of 7)	14135.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	26.0	25.0	37.0	26.5	29.5	37.5
Merged-chr2-75964645-4	chr2	75964145	75965145	+	959.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13534.0	NM_001081228	620631.0	Mm.389286	NM_001081228	ENSMUSG00000075272	Ttc30a2	-	tetratricopeptide repeat domain 30A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64128132-3	chr15	64127633	64128633	+	959.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 17 of 28)	intron (NM_001276461, intron 17 of 28)	-67685.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34468419-7	chr1	34467884	34468884	+	959.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011206, intron 6 of 14)	intron (NM_011206, intron 6 of 14)	8638.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119943899-3	chr11	119943362	119944362	+	959.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037754, intron 1 of 13)	intron (NM_001037754, intron 1 of 13)	770.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	0.5	3.5	2.0	3.5	0.0	3.0
Merged-chr10-88720043-4	chr10	88719553	88720553	+	959.758301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11048.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	7.5	9.0	16.0	6.5	13.5	9.5
Merged-chr13-107676578-4	chr13	107676069	107677069	+	959.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER121|DNA|TcMar?	-10828.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-28420917-4	chr15	28420399	28421399	+	959.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133365, intron 66 of 78)	intron (NM_133365, intron 66 of 78)	217133.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-26996182-3	chr10	26995688	26996688	+	959.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008481, intron 57 of 63)	intron (NM_008481, intron 57 of 63)	223676.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.0	1.0	0.5	0.0	5.0	0.0
Merged-chr3-87334860-4	chr3	87334375	87335375	+	959.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23006.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	121.5	352.5	224.0	99.0	298.5	181.0
Merged-chr8-73242248-4	chr8	73241736	73242736	+	959.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010687, intron 1 of 14)	intron (NM_010687, intron 1 of 14)	111304.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	1.5	8.0	0.0	1.5	8.0	0.0
Merged-chr5-123063671-2	chr5	123063171	123064171	+	959.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-12604.0	NM_001039723	330189.0	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50024741-4	chr17	50024234	50025234	+	959.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 7 of 9)	intron (NM_181397, intron 7 of 9)	165763.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	30.0	80.0	85.5	44.0	96.0	118.5
Merged-chr19-3986532-4	chr19	3986037	3987037	+	959.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302482)	promoter-TSS (NM_001302482)	-33.0	NM_001302479	71670.0	Mm.29735	NM_027857	ENSMUSG00000024866	Acy3	0610006H10Rik|AA3|AAIII|AW107362|Acy-3|HCBP1	aspartoacylase (aminoacylase) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115858855-2	chr11	115858355	115859355	+	959.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	34797.0	NM_001252532	217325.0	Mm.290450	NM_145438	ENSMUSG00000020782	Llgl2	9130006H11Rik|Llglh2	LLGL2 scribble cell polarity complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84180874-4	chr12	84180400	84181400	+	959.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	B4A|SINE|B4	13115.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-43640757-4	chr6	43640201	43641201	+	959.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 2 of 8)	intron (NM_013861, intron 2 of 8)	25577.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50291034-4	chr11	50290521	50291521	+	959.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 1 of 4)	intron (NM_175334, intron 1 of 4)	1315.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-43578525-4	chr16	43578017	43579017	+	959.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 5 of 6)	intron (NM_181058, intron 5 of 6)	-62138.0	NR_030576	100124467.0		NR_030576	ENSMUSG00000076372	Mir568	Mirn568|mmu-mir-568	microRNA 568	ncRNA	0.0	3.0	1.0	0.0	0.0	0.0
Merged-chr19-42019043-4	chr19	42018553	42019553	+	959.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	RLTR34B_MM|LTR|ERVK	-16985.0	NM_020033	56642.0	Mm.143737	NM_020033	ENSMUSG00000025172	Ankrd2	Arpp|mArpp	ankyrin repeat domain 2 (stretch responsive muscle)	protein-coding	21.0	49.0	33.0	33.5	74.0	33.0
Merged-chr7-106612896-4	chr7	106612406	106613406	+	959.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277180, intron 2 of 2)	intron (NM_001277180, intron 2 of 2)	31739.0	NM_001277179	434223.0	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	6.5	19.5	5.5	16.5	18.0	8.5
Merged-chr15-98089553-4	chr15	98089057	98090057	+	959.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144851, intron 1 of 17)	intron (NM_144851, intron 1 of 17)	-3032.0	NM_001163488	18642.0	Mm.272582	NM_021514	ENSMUSG00000033065	Pfkm	AI131669|ATP-PFK|PFK-A|PFK-M|Pfk-4|Pfk4|Pfka|Pfkx	phosphofructokinase, muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35779712-4	chr17	35779228	35780228	+	959.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045459, intron 2 of 2)	intron (NR_045459, intron 2 of 2)	7278.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	4.5	0.5	8.0	2.5	0.5	4.0
Merged-chr19-46641631-4	chr19	46641113	46642113	+	959.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177813, intron 1 of 3)	intron (NM_001177813, intron 1 of 3)	18212.0	NM_001177813	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	1.0	15.5	3.0	1.0	13.0	6.0
Merged-chr4-132336055-4	chr4	132335559	132336559	+	959.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133878, intron 4 of 9)	intron (NM_133878, intron 4 of 9)	-6521.0	NM_027925	71787.0	Mm.239183	NM_027925	ENSMUSG00000028898	Trnau1ap	1110007F05Rik|AA387999|Secp43|Trspap1|WI1-2643G14.2	tRNA selenocysteine 1 associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26638857-4	chr17	26638364	26639364	+	959.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 8 of 9)	intron (NM_026170, intron 8 of 9)	-37532.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-17003680-2	chr11	17003180	17004180	+	959.7000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	5038.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15938183-4	chr17	15937658	15938658	+	959.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-111572.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0.0	0.5	0.0	0.0	0.0	2.0
Merged-chr6-93127618-4	chr6	93127118	93128118	+	959.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	187036.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-111227498-4	chr11	111226978	111227978	+	959.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	161314.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-31155987-4	chr7	31155498	31156498	+	959.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4827.0	NR_153431	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4271003-3	chr11	4270488	4271488	+	959.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008501, exon 4 of 4)	3' UTR (NM_008501, exon 4 of 4)	4192.0	NM_001039537	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8610621-4	chr11	8610142	8611142	+	959.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	53893.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106657624-2	chr11	106657124	106658124	+	959.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001032378, intron 13 of 13)	B4A|SINE|B4	-44694.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-85117628-4	chr16	85117128	85118128	+	959.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 2 of 15)	intron (NM_001198825, intron 2 of 15)	56079.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	0.0	24.5	3.0	0.0	1.0	11.0
Merged-chr1-163930575-3	chr1	163930073	163931073	+	959.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286003, intron 1 of 13)	intron (NM_001286003, intron 1 of 13)	808.0	NM_028776	240880.0	Mm.389213	NM_028776	ENSMUSG00000026584	Scyl3	1200016D23Rik|6030457O16|AW214499|Pace1	SCY1-like 3 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88368070-4	chr17	88367563	88368563	+	959.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72641.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	20.5	61.5	21.0	12.0	17.0	29.0
Merged-chr5-32137339-4	chr5	32136850	32137850	+	959.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008037, intron 1 of 3)	intron (NM_008037, intron 1 of 3)	878.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-36931835-3	chr9	36931223	36932223	+	959.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 6 of 12)	intron (NM_001029838, intron 6 of 12)	98149.0	NM_001357611	235180.0	Mm.5264	NM_183171	ENSMUSG00000032118	Fez1	UNC-76|UNC76	fasciculation and elongation protein zeta 1 (zygin I)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118220857-4	chr11	118220359	118221359	+	959.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-8117.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31085092-3	chr6	31084588	31085588	+	959.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21995.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45195891-2	chr2	45195391	45196391	+	959.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-78449.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134094631-2	chr4	134094131	134095131	+	959.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013706, intron 1 of 1)	intron (NM_013706, intron 1 of 1)	442.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	46.0	192.5	135.5	9.5	40.0	17.5
Merged-chr16-90885573-4	chr16	90885060	90886060	+	959.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027627, intron 4 of 6)	intron (NM_027627, intron 4 of 6)	49289.0	NM_026502	68001.0	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123935580-4	chr9	123935073	123936073	+	959.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33119.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66817185-4	chr15	66816670	66817670	+	959.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	14659.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118489808-4	chr9	118489258	118490258	+	959.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11569.0	NM_010136	13813.0	Mm.200692	NM_010136	ENSMUSG00000032446	Eomes	C77258|TBR-2|Tbr2	eomesodermin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73135144-4	chr15	73134641	73135641	+	959.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 3 of 18)	ORR1B1|LTR|ERVL-MaLR	44729.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65717590-4	chr5	65717092	65718092	+	959.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19736.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	12.0	20.0	18.0	4.0	15.0	13.0
Merged-chr4-123957387-4	chr4	123956879	123957879	+	959.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39946.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	0.0	0.0	1.5	0.0	2.0	1.0
Merged-chr3-52257993-4	chr3	52257499	52258499	+	959.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10338.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0.5	1.0	2.5	0.5	1.0	2.5
Merged-chr6-33273116-4	chr6	33272625	33273625	+	959.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347089, intron 2 of 9)	B1F|SINE|Alu	23997.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98267812-4	chr12	98267308	98268308	+	959.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008152)	promoter-TSS (NM_008152)	-827.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-86678519-3	chr14	86677991	86678991	+	959.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019670, intron 27 of 27)	intron (NM_019670, intron 27 of 27)	432521.0	NR_040457	75155.0	Mm.399239	NR_040457	ENSMUSG00000115271	4930529K09Rik	4930507G21Rik	RIKEN cDNA 4930529K09 gene	ncRNA	5.0	2.5	11.0	0.5	5.5	16.5
Merged-chr8-11107418-3	chr8	11106907	11107907	+	959.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98977.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118534524-4	chr7	118534019	118535019	+	959.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1163.0	NM_009940	12850.0	Mm.20634	NM_009940	ENSMUSG00000030652	Coq7	clk-1	demethyl-Q 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71376673-6	chr2	71376236	71377236	+	959.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-9182.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135544975-4	chr1	135544476	135545476	+	959.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173437, intron 1 of 28)	intron (NM_173437, intron 1 of 28)	40379.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129608786-4	chr4	129608303	129609303	+	959.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029748)	TTS (NM_029748)	5454.0	NM_001195730	100504491.0	Mm.482597	NM_001195730	ENSMUSG00000078552	Dcdc2b	Gm12964|Gm1366	doublecortin domain containing 2b	protein-coding	6.5	7.5	7.5	20.0	59.0	36.5
Merged-chr4-47057392-4	chr4	47056897	47057897	+	959.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356426)	promoter-TSS (NM_001356426)	-91.0	NM_001356426	75691.0	Mm.86866	NM_001024136	ENSMUSG00000066191	Anks6	2210417J20Rik|Ankrd14|Gm635|SamCystin|Samd6|b2b1801.1Clo	ankyrin repeat and sterile alpha motif domain containing 6	protein-coding	10.5	0.0	0.0	0.0	0.0	0.0
Merged-chr1-12992435-5	chr1	12991988	12992988	+	959.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1353.0	NM_172841	240726.0	Mm.24481	NM_172841	ENSMUSG00000025938	Slco5a1	4732454B15|A630033C23Rik|AA407151	solute carrier organic anion transporter family, member 5A1	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr11-63788222-4	chr11	63787687	63788687	+	959.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134097.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	12.5	46.0	29.0	22.0	15.5	20.5
Merged-chr6-124859960-4	chr6	124859442	124860442	+	959.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013533, intron 3 of 4)	intron (NM_013533, intron 3 of 4)	-2255.0	NM_013534	14789.0	Mm.35708	NM_013534	ENSMUSG00000023191	P3h3	BC016431|Grcb|Leprel2	prolyl 3-hydroxylase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-3034185-2	chr9	3033685	3034685	+	959.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	4558.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124847465-4	chr6	124846952	124847952	+	959.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013534, intron 9 of 14)	intron (NM_013534, intron 9 of 14)	-7177.0	NM_013530	14695.0	Mm.68889	NM_013530	ENSMUSG00000023439	Gnb3	Gnb-3	guanine nucleotide binding protein (G protein), beta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135973837-4	chr4	135973310	135974310	+	959.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1216.0	NM_011942	26394.0	Mm.34302	NM_011942	ENSMUSG00000028670	Lypla2	LysoII	lysophospholipase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120948559-4	chr1	120948056	120949056	+	959.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-138849.0	NR_038008	98452.0	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81225209-4	chr13	81224700	81225700	+	959.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 85 of 89)	intron (NM_054053, intron 85 of 89)	261126.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-71850592-4	chr11	71850104	71851104	+	959.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	89518.0	NR_045942	73816.0	Mm.390391	NR_045942	ENSMUSG00000085528	4930401O10Rik	-	RIKEN cDNA 4930401O10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93944360-3	chr10	93943857	93944857	+	959.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19506.0	NR_029764	723908.0		NR_029764	ENSMUSG00000065607	Mir331	Mirn331|mmu-mir-331	microRNA 331	ncRNA	52.5	74.5	69.0	5.0	6.0	20.0
Merged-chr16-33837483-3	chr16	33837003	33838003	+	959.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 1 of 14)	intron (NM_001145884, intron 1 of 14)	7838.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19696585-3	chr7	19696069	19697069	+	959.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009696, exon 4 of 4)	exon (NM_009696, exon 4 of 4)	1829.0	NM_001305819	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124360757-4	chr6	124360247	124361247	+	959.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3661.0	NM_001177502	76921.0	Mm.425335	NM_001177502	ENSMUSG00000079346	1700013D24Rik	-	RIKEN cDNA 1700013D24 gene	protein-coding	0.0	9.5	0.0	8.0	24.0	4.5
Merged-chr15-81045544-4	chr15	81045034	81046034	+	959.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	59513.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	8.0	38.0	14.0	28.0	31.0	32.5
Merged-chr1-52648313-4	chr1	52647829	52648829	+	959.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_024590, intron 7 of 8)	intron (NR_024590, intron 7 of 8)	17624.0	NM_001142647	227094.0	Mm.83541	NM_172654	ENSMUSG00000043015	Nemp2	5330401P04Rik|9830163O08|Tmem194b	nuclear envelope integral membrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr19-26605964-5	chr19	26605525	26606525	+	959.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011416, intron 1 of 32)	CpG	865.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	1.5	10.5	5.5	0.0	0.0	0.0
Merged-chr2-30784589-6	chr2	30784070	30785070	+	959.522217	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17167.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116243907-4	chr9	116243428	116244428	+	959.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54748.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	4.0	4.0	3.5	3.5	21.5	7.5
Merged-chr10-51527984-6	chr10	51527468	51528468	+	959.513916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16-int|LTR|ERVK	37070.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4002151-2	chr19	4001651	4002651	+	959.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025529)	TTS (NM_025529)	-1234.0	NM_021791	60425.0	Mm.266972	NM_021791	ENSMUSG00000024871	Doc2g	D830013O18Rik	double C2, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50162462-2	chr11	50161962	50162962	+	959.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029745, intron 17 of 20)	intron (NM_029745, intron 17 of 20)	-12389.0	NM_026543	68067.0	Mm.40828	NM_026543	ENSMUSG00000020381	Mrnip	2900016G09Rik|3010026O09Rik|AI851514|AW475975	MRN complex interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-86732070-2	chr10	86731570	86732570	+	959.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153595)	TTS (NM_153595)	19305.0	NM_153595	103220.0	Mm.440762	NM_153595	ENSMUSG00000044937	Ttc41	AI449705|AU041509|Gnn	tetratricopeptide repeat domain 41	protein-coding	0.0	5.5	1.5	0.0	5.5	1.5
Merged-chr1-173447336-2	chr1	173446834	173447834	+	959.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 2 of 8)	L1MC1|LINE|L1	26730.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	2.5	11.5	18.0	10.0	5.0	10.0
Merged-chr2-164797142-2	chr2	164796642	164797642	+	959.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133240, intron 3 of 5)	intron (NM_133240, intron 3 of 5)	7739.0	NM_133240	170789.0	Mm.277878	NM_133240	ENSMUSG00000017307	Acot8	PTE-2|Pte1	acyl-CoA thioesterase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99224577-2	chr12	99224077	99225077	+	959.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 4 of 5)	RMER10A|LTR|ERVL	-61769.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-26511145-2	chr19	26510645	26511645	+	959.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94015.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155413614-4	chr1	155413120	155414120	+	959.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011273, intron 1 of 14)	intron (NM_011273, intron 1 of 14)	3824.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137747172-2	chr5	137746672	137747672	+	959.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029805, exon 2 of 6)	exon (NM_029805, exon 2 of 6)	1203.0	NM_029805	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59659927-4	chr9	59659419	59660419	+	959.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253883, intron 1 of 10)	intron (NM_001253883, intron 1 of 10)	3551.0	NM_011099	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141619110-3	chr4	141618600	141619600	+	959.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145987)	promoter-TSS (NM_145987)	-467.0	NR_151462	213989.0	Mm.34891	NM_145987	ENSMUSG00000043085	Tmem82	-	transmembrane protein 82	protein-coding	4.0	6.5	4.5	3.5	6.0	2.5
Merged-chr15-101298701-2	chr15	101298201	101299201	+	959.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5489.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58687838-4	chr13	58687309	58688309	+	959.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	74502.0	NR_045469	67585.0	Mm.84751	NR_045469	ENSMUSG00000114384	4930455J16Rik	-	RIKEN cDNA 4930455J16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-149040300-2	chr6	149039800	149040800	+	959.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177192, intron 6 of 20)	intron (NM_177192, intron 6 of 20)	61380.0	NM_177192	320560.0	Mm.426874	NM_177192	ENSMUSG00000030313	Dennd5b	9330160C06Rik|AI852444|D030011O10Rik|Gm17524	DENN/MADD domain containing 5B	protein-coding	2.5	2.5	1.0	7.0	2.0	2.5
Merged-chr2-129570395-4	chr2	129569911	129570911	+	959.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-22428.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	22.0	84.0	50.5	10.0	44.5	29.5
Merged-chr3-97775936-4	chr3	97775385	97776385	+	959.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 8 of 46)	intron (NM_001039376, intron 8 of 46)	-7871.0	NR_110360	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8849636-4	chr10	8849134	8850134	+	959.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	RSINE1|SINE|B4	36436.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	6.5	18.0	14.0	9.0	34.5	16.5
Merged-chr14-17879664-4	chr14	17879185	17880185	+	959.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-101959.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56689372-4	chr19	56688875	56689875	+	959.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32997.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111062645-4	chr8	111062143	111063143	+	959.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6304.0	NM_028274	72544.0	Mm.24174	NM_028274	ENSMUSG00000109941	Exosc6	2610510N21Rik|C76919|Mtr3	exosome component 6	protein-coding	13.5	7.5	1.5	1.0	10.5	2.5
Merged-chr2-61514208-3	chr2	61513703	61514703	+	959.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64383.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136170289-4	chr1	136169787	136170787	+	959.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 30 of 34)	intron (NM_001039472, intron 30 of 34)	38897.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59598799-4	chr9	59598305	59599305	+	959.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361099, intron 2 of 10)	(TTC)n|Simple_repeat|Simple_repeat	9517.0	NM_001311092	76183.0	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-17967475-4	chr14	17966969	17967969	+	959.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 4 of 9)	intron (NM_001113417, intron 4 of 9)	-14175.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7852063-4	chr10	7851556	7852556	+	959.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172785, intron 2 of 5)	intron (NM_172785, intron 2 of 5)	15675.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	17.5	15.0	10.5	18.5	23.5	23.5
Merged-chr5-34637183-4	chr5	34636690	34637690	+	959.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356979)	promoter-TSS (NM_001356979)	22.0	NM_001356978	68294.0	Mm.34564	NM_026660	ENSMUSG00000001082	Mfsd10	0610009O03Rik|Tetran	major facilitator superfamily domain containing 10	protein-coding	23.0	44.0	39.5	13.5	28.0	30.5
Merged-chr18-23753112-6	chr18	23752573	23753573	+	959.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126066)	promoter-TSS (NR_126066)	-652.0	NM_001162941	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5841705-6	chr19	5841227	5842227	+	959.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_003513)	TTS (NR_003513)	3751.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32716278-3	chr9	32715769	32716769	+	959.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038642, intron 1 of 6)	intron (NM_001038642, intron 1 of 6)	20227.0	NM_001038642	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	2.0	1.0	13.0	6.0	3.5	3.5
Merged-chr13-113756003-3	chr13	113755494	113756494	+	959.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-38514.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-30198126-6	chr11	30197679	30198679	+	959.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009260)	promoter-TSS (NM_009260)	78.0	NM_009260	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	14.5	21.5	21.5	12.0	18.5	22.5
Merged-chr9-90253732-4	chr9	90253233	90254233	+	959.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	17036.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148084396-4	chr4	148083888	148084888	+	959.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301281, intron 1 of 4)	intron (NM_001301281, intron 1 of 4)	3676.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-3982909-4	chr15	3982411	3983411	+	959.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145930, exon 6 of 6)	3' UTR (NM_145930, exon 6 of 6)	-3338.0	NM_134099	106052.0	Mm.234191	NM_134099	ENSMUSG00000022184	Fbxo4	1700096C12Rik|AI851261|AW494535|Fbx4	F-box protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5572485-4	chr19	5571976	5572976	+	959.3583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4452.0	NM_001033448	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21996906-5	chr10	21996472	21997472	+	959.349976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011361, intron 7 of 11)	intron (NM_011361, intron 7 of 11)	2306.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	23.5	41.5	32.0	21.0	44.0	22.0
Merged-chr10-30660753-4	chr10	30660249	30661249	+	959.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 10 of 14)	intron (NM_001358842, intron 10 of 14)	-4882.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79238329-2	chr3	79237829	79238829	+	959.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_045502, intron 1 of 2)	intron (NR_045502, intron 1 of 2)	25410.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110114844-2	chr7	110114344	110115344	+	959.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7215.0	NM_001355058	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85025203-3	chr8	85024704	85025704	+	959.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357202)	promoter-TSS (NM_001357202)	83.0	NM_001357203	56495.0	Mm.41475	NM_019652	ENSMUSG00000052456	Asna1	1810048H22Rik|ArsA	arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	protein-coding	292.5	433.5	351.0	162.0	388.0	313.5
Merged-chr13-34088392-3	chr13	34087878	34088878	+	959.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046184, intron 4 of 4)	intron (NR_046184, intron 4 of 4)	-10370.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	1.0	0.5	0.0	0.0	5.0	1.0
Merged-chr17-3205133-3	chr17	3204634	3205634	+	959.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90162.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99244830-2	chr5	99244330	99245330	+	959.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	8097.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	27.0	57.5	40.5	27.0	58.0	39.5
Merged-chr10-41523978-4	chr10	41523468	41524468	+	959.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016898, intron 3 of 5)	intron (NM_016898, intron 3 of 5)	4468.0	NM_016898	53599.0	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-99486064-3	chr6	99485616	99486616	+	959.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347345, intron 1 of 19)	intron (NM_001347345, intron 1 of 19)	34877.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98773887-3	chr12	98773385	98774385	+	959.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160108, intron 1 of 6)	intron (NM_001160108, intron 1 of 6)	2863.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-117497320-3	chr6	117496831	117497831	+	959.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152214, intron 2 of 2)	RMER19B|LTR|ERVK	2096.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-75414484-3	chr9	75413993	75414993	+	959.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040719, intron 3 of 3)	intron (NR_040719, intron 3 of 3)	4309.0	NR_040719	71274.0	Mm.399152	NR_040719	ENSMUSG00000097021	4933433G15Rik	4921522K19Rik	RIKEN cDNA 4933433G15 gene	ncRNA	5.0	9.5	15.0	4.0	5.5	2.0
Merged-chr5-3491989-3	chr5	3491497	3492497	+	959.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-51836.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83657283-3	chr6	83656776	83657776	+	959.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1160.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	18.5	63.5	37.0	60.5	134.5	83.5
Merged-chr1-20941562-3	chr1	20941064	20942064	+	959.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10062.0	NM_027974	71877.0	Mm.29178	NM_027974	ENSMUSG00000041809	Efhc1	1700029F22Rik|mRib72-1|myoclonin1	EF-hand domain (C-terminal) containing 1	protein-coding	2.5	5.0	0.0	11.0	38.5	7.0
Merged-chr11-60116143-3	chr11	60115626	60116626	+	959.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009021, intron 1 of 5)	PB1D10|SINE|Alu	11113.0	NM_009021	19377.0	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123257266-4	chr5	123256768	123257768	+	959.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29078.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3434853-4	chr12	3434352	3435352	+	959.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270988, intron 1 of 11)	intron (NM_001270988, intron 1 of 11)	7995.0	NM_172421	75302.0	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2, transcriptional regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-100734765-4	chr3	100734270	100735270	+	959.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-49297.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	0.5	5.0	0.0	1.0	0.0	0.0
Merged-chr3-94997136-4	chr3	94996633	94997633	+	959.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293715, intron 8 of 11)	intron (NM_001293715, intron 8 of 11)	-7035.0	NR_105980	102465613.0		NR_105980	ENSMUSG00000099033	Mir7013	Gm27488|mmu-mir-7013	microRNA 7013	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51270615-4	chr3	51270118	51271118	+	959.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 4 of 9)	intron (NM_023502, intron 4 of 9)	-6143.0	NR_073429	67746.0	Mm.441177	NR_073429	ENSMUSG00000087440	4930577N17Rik	-	RIKEN cDNA 4930577N17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106421961-4	chr9	106421458	106422458	+	959.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7453.0	NM_001324533	19944.0	Mm.288696	NM_009082	ENSMUSG00000048758	Rpl29	Rpl43	ribosomal protein L29	protein-coding	0.0	8.5	11.5	12.0	0.5	9.5
Merged-chr2-5741078-4	chr2	5740569	5741569	+	959.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26307.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	5.5	27.0	16.5	4.0	27.5	17.0
Merged-chr10-91188136-3	chr10	91187630	91188630	+	959.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16511.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87901138-3	chr1	87900629	87901629	+	959.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177646, intron 3 of 29)	intron (NM_177646, intron 3 of 29)	-46830.0	NR_136921	100503175.0	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97212769-4	chr15	97212286	97213286	+	959.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34321.0	NM_172293	239647.0	Mm.130036	NM_172293	ENSMUSG00000044250	Pced1b	Fam113b	PC-esterase domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73892143-4	chr2	73891645	73892645	+	959.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025093, intron 1 of 14)	CpG	494.0	NM_001284371	11909.0	Mm.209903	NM_009715	ENSMUSG00000027104	Atf2	Atf-2|CRE-BP|Creb2|D130078H02Rik|D18875|Tg(Gzma-Klra1)7Wum|mXBP	activating transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28374284-4	chr7	28373811	28374811	+	959.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1649.0	NM_001083912	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-19777051-4	chr14	19776531	19777531	+	959.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008695, intron 4 of 20)	intron (NM_008695, intron 4 of 20)	25774.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115697923-4	chr6	115697407	115698407	+	959.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21272.0	NM_029780	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88828857-4	chr15	88828346	88829346	+	959.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9200.0	NM_029720	76737.0	Mm.292567	NM_029720	ENSMUSG00000023272	Creld2	5730592L21Rik|C85758	cysteine-rich with EGF-like domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5508440-2	chr2	5507940	5508940	+	959.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290375, intron 2 of 10)	B4|SINE|B4	129050.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	1.0	1.5	3.0	0.5	4.5	2.5
Merged-chr16-36674600-4	chr16	36674093	36675093	+	959.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8516.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124657563-3	chr2	124657044	124658044	+	959.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199241, intron 8 of 17)	intron (NM_199241, intron 8 of 17)	3963.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34855850-4	chr1	34855345	34856345	+	959.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357425, intron 2 of 8)	(TTTTG)n|Simple_repeat|Simple_repeat	5856.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88403089-2	chr3	88402589	88403589	+	959.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_025928, intron 1 of 4)	intron (NM_025928, intron 1 of 4)	7308.0	NM_001310605	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-25662835-3	chr5	25662363	25663363	+	959.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	42934.0	NM_020570	57434.0	Mm.143767	NM_020570	ENSMUSG00000028933	Xrcc2	4921524O04Rik|8030409M04Rik|RAD51|RecA	X-ray repair complementing defective repair in Chinese hamster cells 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-58446024-3	chr10	58445510	58446510	+	959.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011240)	promoter-TSS (NM_011240)	-842.0	NM_011240	19386.0	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-100618690-3	chr3	100618180	100619180	+	959.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010763, intron 7 of 12)	intron (NM_010763, intron 7 of 12)	66793.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-39881289-4	chr13	39880794	39881794	+	959.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	406717.0	NM_172143	218165.0	Mm.364096	NM_172143	ENSMUSG00000047094	Ofcc1	opo	orofacial cleft 1 candidate 1	protein-coding	11.5	0.0	1.0	11.5	0.0	1.0
Merged-chr5-41525680-4	chr5	41525185	41526185	+	959.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	182006.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	17.5	13.5	10.5	0.5	6.0	13.0
Merged-chr2-166967143-3	chr2	166966632	166967632	+	959.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109905, intron 1 of 11)	intron (NM_001109905, intron 1 of 11)	-2415.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34727430-6	chr2	34726908	34727908	+	959.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151469, intron 4 of 26)	intron (NR_151469, intron 4 of 26)	27824.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24490682-4	chr10	24490176	24491176	+	959.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104766.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108854656-3	chr8	108854166	108855166	+	959.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 3 of 9)	intron (NM_007496, intron 3 of 9)	-82194.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0.5	5.5	0.0	1.0	7.0	2.0
Merged-chr6-54780753-4	chr6	54780239	54781239	+	959.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36177.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	21.5	25.0	37.0	22.0	34.5	24.0
Merged-chr5-99414144-2	chr5	99413644	99414644	+	959.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-161217.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69673817-2	chr11	69673317	69674317	+	959.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_030702, intron 10 of 10)	intron (NM_030702, intron 10 of 10)	-1394.0	NM_001159375	13681.0	Mm.26680	NM_144958	ENSMUSG00000059796	Eif4a1	BM-010|Ddx2a|Eif4	eukaryotic translation initiation factor 4A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30014742-4	chr5	30014247	30015247	+	959.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001314054, intron 2 of 4)	intron (NM_001314054, intron 2 of 4)	1633.0	NM_031168	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40218589-4	chr12	40218099	40219099	+	959.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013562, intron 1 of 11)	intron (NM_013562, intron 1 of 11)	4212.0	NR_035459	100316693.0		NR_035459	ENSMUSG00000089371	Mir1938	mir-1938|mmu-mir-1938	microRNA 1938	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-40746461-4	chr3	40745958	40746958	+	959.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011020, intron 1 of 18)	intron (NM_011020, intron 1 of 18)	845.0	NM_011020	18415.0	Mm.39330	NM_011020	ENSMUSG00000025757	Hspa4l	94kDa|AI461691|APG-1|Osp94	heat shock protein 4 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45114725-4	chr2	45114204	45115204	+	959.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_110572)	TTS (NR_110572)	-1425.0	NM_015753	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34532782-4	chr10	34532279	34533279	+	959.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358769, intron 2 of 8)	MTD|LTR|ERVL-MaLR	49379.0	NM_010237	14302.0	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117852122-4	chr2	117851628	117852628	+	959.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040631, intron 2 of 5)	intron (NR_040631, intron 2 of 5)	30200.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	16.5	58.0	25.5	24.0	41.0	24.0
Merged-chr11-103308084-4	chr11	103307590	103308590	+	959.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	36612.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	135.0	261.0	161.0	61.0	166.0	163.5
Merged-chr7-90352386-4	chr7	90351851	90352851	+	959.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040085, intron 2 of 18)	MIR3|SINE|MIR	-34630.0	NM_001040087	83671.0	Mm.26751	NM_031394	ENSMUSG00000030616	Sytl2	AI266830|Slp2|mKIAA1597	synaptotagmin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100004794-4	chr12	100004300	100005300	+	959.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	MTE2a|LTR|ERVL-MaLR	40301.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7264973-3	chr10	7264476	7265476	+	959.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52739.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	0.5	13.5	0.0	6.0	27.0	25.0
Merged-chr6-108449113-3	chr6	108448651	108449651	+	959.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-40592.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	51.0	66.0	100.5	53.0	66.0	105.0
Merged-chr6-8744557-3	chr6	8744048	8745048	+	959.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252266, intron 3 of 11)	intron (NM_001252266, intron 3 of 11)	13910.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95775724-3	chr4	95775223	95776223	+	959.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029347, intron 8 of 10)	intron (NM_029347, intron 8 of 10)	191312.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	0.0	1.5	0.0	1.0	0.0	0.0
Merged-chr8-122913392-3	chr8	122912898	122913898	+	959.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 3 of 12)	intron (NM_001081379, intron 3 of 12)	65024.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	20.0	19.0	15.5	7.0	0.0	4.0
Merged-chr6-39462992-4	chr6	39462490	39463490	+	959.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172477, exon 19 of 19)	3' UTR (NM_172477, exon 19 of 19)	42612.0	NR_152168	621427.0	Mm.389742	NR_152168	ENSMUSG00000068601	Gm10244	Anmkrn1	predicted gene 10244	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96256097-4	chr3	96255599	96256599	+	959.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7218.0	NM_033596	97122.0	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-111210716-4	chr11	111210213	111211213	+	959.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	144549.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	9.0	0.0	2.5	0.0	5.0	2.5
Merged-chr16-84955631-4	chr16	84955121	84956121	+	959.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 15 of 15)	intron (NM_001198825, intron 15 of 15)	-16590.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-70864471-4	chr6	70863974	70864974	+	959.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010121, intron 2 of 16)	intron (NM_010121, intron 2 of 16)	19959.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57712832-4	chr10	57712312	57713312	+	959.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008863, intron 4 of 5)	intron (NM_008863, intron 4 of 5)	61831.0	NM_001190402	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20915833-4	chr10	20915343	20916343	+	959.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36704.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	12.0	0.5	4.5	0.0	12.0	9.0
Merged-chr15-99065848-4	chr15	99065361	99066361	+	959.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_B|LTR|ERVK	8808.0	NR_155351	102637490.0	Mm.421289	NR_155351	ENSMUSG00000116371	Gm34284	-	predicted gene, 34284	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32455918-4	chr11	32455430	32456430	+	959.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361561, intron 1 of 1)	CpG	560.0	NM_173784	327900.0	Mm.260956	NM_173784	ENSMUSG00000044949	Ubtd2	4930571L24|9630054F20Rik|AI645720	ubiquitin domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160569710-4	chr2	160569178	160570178	+	959.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76219.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30790233-4	chr16	30789737	30790737	+	959.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	190514.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102361397-1	chr12	102360897	102361897	+	959.0	f1_balb.idr	intron (NM_177620, intron 5 of 9)	intron (NM_177620, intron 5 of 9)	77756.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	4.0	20.0	8.0	5.0	7.5	4.0
Merged-chr2-174072406-1	chr2	174071906	174072906	+	959.0	f1_c57bl6.idr	Intergenic	Charlie22a|DNA|hAT-Charlie	-4645.0	NM_172675	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86587145-4	chr1	86586675	86587675	+	959.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172974, exon 2 of 8)	5' UTR (NM_172974, exon 2 of 8)	4254.0	NM_001360887	26895.0	Mm.12973	NM_172974	ENSMUSG00000026240	Cops7b	D1Wsu66e|E130114M23	COP9 signalosome subunit 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20897527-1	chr13	20897027	20898027	+	959.0	f1_c57bl6.idr	intron (NM_012054, intron 4 of 20)	intron (NM_012054, intron 4 of 20)	103414.0	NM_012054	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	3.0	3.0	11.5	2.0	5.5	2.5
Merged-chr4-89129516-4	chr4	89129014	89130014	+	959.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1288.0	NR_151607	102637941.0	Mm.366358	NR_151607		Gm12602	-	predicted gene 12602	ncRNA	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr3-87885010-2	chr3	87884536	87885536	+	959.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_033573, exon 1 of 7)	exon (NM_033573, exon 1 of 7)	526.0	NM_033573	94315.0	Mm.35089	NM_033573	ENSMUSG00000004895	Prcc	-	papillary renal cell carcinoma (translocation-associated)	protein-coding	23.0	73.0	40.0	16.5	29.5	47.0
Merged-chr11-29789354-2	chr11	29788861	29789861	+	959.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 24 of 41)	intron (NM_146016, intron 24 of 41)	36307.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	9.0	4.0	4.0	3.0	1.0	4.0
Merged-chr9-25309906-2	chr9	25309406	25310406	+	959.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57014.0	NM_001359738	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6602110-2	chr15	6601610	6602610	+	959.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011815, intron 1 of 17)	intron (NM_011815, intron 1 of 17)	22263.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-35178034-1	chr6	35177534	35178534	+	959.0	f0_c57.idr	intron (NM_027513, intron 1 of 42)	CpG	418.0	NM_027513	70699.0	Mm.261208	NM_027513	ENSMUSG00000038759	Nup205	3830404O05Rik|AV248391|mKIAA0225	nucleoporin 205	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36745370-2	chr18	36744870	36745870	+	959.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010885)	promoter-TSS (NM_010885)	714.0	NM_011879	24010.0	Mm.30234	NM_011879	ENSMUSG00000024474	Ik	MuRED	IK cytokine	protein-coding	42.5	102.5	85.5	49.0	84.0	96.0
Merged-chr17-23981782-2	chr17	23981290	23982290	+	959.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6560.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	49.0	105.0	73.0	25.0	113.0	85.5
Merged-chr2-128820718-1	chr2	128820218	128821218	+	959.0	f1_c57bl6.idr	intron (NM_001355629, intron 1 of 18)	intron (NM_001355629, intron 1 of 18)	2415.0	NM_001355629	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	16.0	29.0	30.5	6.5	25.5	8.0
Merged-chr7-78895134-2	chr7	78894634	78895634	+	959.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162939)	promoter-TSS (NM_001162939)	-793.0	NM_026531	68048.0	Mm.34109	NM_026531	ENSMUSG00000030609	Aen	2700083B06Rik|Isg20l1	apoptosis enhancing nuclease	protein-coding	0.5	0.0	0.0	0.5	0.0	0.0
Merged-chr2-132180872-1	chr2	132180372	132181372	+	959.0	f0_balb.idr	Intergenic	Intergenic	-35552.0	NM_001355430	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4123395-4	chr11	4122904	4123904	+	959.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-4675.0	NM_144520	67815.0	Mm.253922	NM_144520	ENSMUSG00000003585	Sec14l2	1300013M05Rik|Spf|TAP	SEC14-like lipid binding 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25317468-2	chr7	25316968	25317968	+	959.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001160400, exon 1 of 41)	5' UTR (NM_001160400, exon 1 of 41)	304.0	NM_001160400	269878.0	Mm.38527	NM_001160400	ENSMUSG00000045039	Megf8	AW049492|Egfl4|b2b1702.2Clo|b2b1702Clo|b2b288Clo|m687Ddg|mKIAA0817	multiple EGF-like-domains 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39520546-3	chr10	39520052	39521052	+	959.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122893, intron 5 of 13)	intron (NM_001122893, intron 5 of 13)	-92382.0	NM_134000	103213.0	Mm.436686	NM_134000	ENSMUSG00000019842	Traf3ip2	AI429613|Act1|CIKS	TRAF3 interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6475504-4	chr19	6474984	6475984	+	959.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 9 of 22)	intron (NM_001205234, intron 9 of 22)	56746.0	NM_001205234	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67381685-1	chr7	67381185	67382185	+	959.0	f1_balb.idr	Intergenic	MER44B|DNA|TcMar-Tigger	-8827.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.0	0.0	3.5	0.0	6.0	1.5
Merged-chr4-53429477-2	chr4	53428970	53429970	+	959.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-10943.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	9.5	0.0	5.0	15.5	3.5	7.0
Merged-chr12-17776316-1	chr12	17775816	17776816	+	959.0	f1_c57bl6.idr	intron (NM_001361645, intron 2 of 4)	(TG)n|Simple_repeat|Simple_repeat	85507.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	6.5	9.0	18.5	0.0	8.5	4.5
Merged-chr6-86398216-2	chr6	86397716	86398716	+	959.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1066.0	NM_025823	66881.0	Mm.30849	NM_025823	ENSMUSG00000029998	Pcyox1	1200015P13Rik|AI115532|AI448340|PCL1|Pcly	prenylcysteine oxidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-77911599-4	chr14	77911093	77912093	+	959.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029495, intron 1 of 11)	intron (NM_029495, intron 1 of 11)	7354.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125515675-4	chr6	125515157	125516157	+	959.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20897.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	0.0	12.5	6.5	11.0	23.0	6.5
Merged-chr11-76441233-2	chr11	76440733	76441733	+	959.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 15 of 21)	MTC|LTR|ERVL-MaLR	27232.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	1.0	7.0	0.0	0.0	3.0	0.0
Merged-chr2-120431681-2	chr2	120431181	120432181	+	959.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172672, intron 10 of 23)	RSINE1|SINE|B4	-27565.0	NM_001110496	211499.0	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3498842-2	chr5	3498342	3499342	+	959.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-44991.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-53482837-1	chr17	53482337	53483337	+	959.0	f1_c57bl6.idr	intron (NM_025887, intron 1 of 5)	T-rich|Low_complexity|Low_complexity	3603.0	NM_025887	271457.0	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	11.0	21.5	13.5	6.0	6.0	23.5
Merged-chr14-31496263-4	chr14	31495737	31496737	+	959.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028932, intron 1 of 5)	intron (NM_028932, intron 1 of 5)	1158.0	NM_028932	74427.0	Mm.491208	NM_028932	ENSMUSG00000021890	Eaf1	4933403C17Rik|AI666536	ELL associated factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-24780795-1	chr12	24780295	24781295	+	959.0	f0_balb.idr	Intergenic	Intergenic	-50804.0	NM_026037	67216.0	Mm.167671	NM_026037	ENSMUSG00000020646	Mboat2	2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2	membrane bound O-acyltransferase domain containing 2	protein-coding	3.5	8.0	10.5	21.5	29.5	17.5
Merged-chr3-144232143-4	chr3	144231637	144232637	+	959.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26882.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149654427-2	chr4	149653927	149654927	+	959.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029837, intron 16 of 23)	intron (NM_001029837, intron 16 of 23)	1140.0	NR_105990	102465983.0		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	0.0	1.0	2.0	0.0	0.0	0.0
Merged-chr1-85905386-2	chr1	85904886	85905886	+	959.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_022417, exon 3 of 6)	exon (NM_022417, exon 3 of 6)	10876.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	1.0	0.5	0.0	3.0	0.0	0.5
Merged-chr3-108123471-3	chr3	108122969	108123969	+	959.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010306, intron 3 of 8)	intron (NM_010306, intron 3 of 8)	22683.0	NM_010306	14679.0	Mm.271703	NM_010306	ENSMUSG00000000001	Gnai3	AI158965|AW537698|Galphai3|Gnai-3	guanine nucleotide binding protein (G protein), alpha inhibiting 3	protein-coding	0.0	5.0	9.0	4.0	3.5	1.0
Merged-chr5-67827132-4	chr5	67826643	67827643	+	959.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	L3|LINE|CR1	20288.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96334185-2	chr10	96333685	96334685	+	959.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	107978.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36400679-2	chr18	36400179	36401179	+	959.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52055.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr11-57677536-3	chr11	57677043	57678043	+	959.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134189, intron 1 of 11)	intron (NM_134189, intron 1 of 11)	-28049.0	NR_153850	78762.0	Mm.362149	NR_153850		4933424L21Rik	-	RIKEN cDNA 4933424L21 gene	ncRNA	16.5	19.0	27.5	9.0	29.5	52.0
Merged-chr5-136086360-7	chr5	136085871	136086871	+	958.9761960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039103, intron 1 of 19)	intron (NM_001039103, intron 1 of 19)	2455.0	NM_001039103	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95836198-4	chr16	95835719	95836719	+	958.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040485, intron 3 of 3)	intron (NR_040485, intron 3 of 3)	62494.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91581898-4	chr12	91581399	91582399	+	958.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175335, intron 2 of 8)	intron (NM_175335, intron 2 of 8)	7750.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51595328-4	chr10	51594836	51595836	+	958.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4876.0	NM_029894	77296.0	Mm.30588	NM_029894	ENSMUSG00000019909	Fam162b	9430073N08Rik	family with sequence similarity 162, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125501414-3	chr6	125500941	125501941	+	958.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6681.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	11.5	2.0	8.0	5.5	9.5	6.5
Merged-chr9-110452711-4	chr9	110452212	110453212	+	958.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360306, intron 2 of 9)	intron (NM_001360306, intron 2 of 9)	23982.0	NM_001360306	270201.0	Mm.41744	NM_177771	ENSMUSG00000054792	Klhl18	A930041K15|AW545966	kelch-like 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126901292-4	chr8	126900787	126901787	+	958.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44634.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134676285-4	chr5	134675851	134676851	+	958.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010717, intron 2 of 15)	intron (NM_010717, intron 2 of 15)	1897.0	NM_001305875	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86078603-4	chr12	86078102	86079102	+	958.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009368, exon 1 of 7)	5' UTR (NM_009368, exon 1 of 7)	439.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98807863-4	chr13	98807370	98808370	+	958.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172591, intron 1 of 25)	intron (NM_172591, intron 1 of 25)	7579.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	4.5	14.0	20.5	1.5	7.0	13.0
Merged-chr15-36791827-4	chr15	36791318	36792318	+	958.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253807)	promoter-TSS (NM_001253807)	-886.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82422249-4	chr18	82421753	82422753	+	958.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15476.0	NM_008082	14427.0	Mm.6219	NM_008082	ENSMUSG00000024553	Galr1	Galnr1	galanin receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31060747-6	chr3	31060275	31061275	+	958.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21809.0	NR_105975	102465610.0		NR_105975	ENSMUSG00000098890	Mir7008	Gm27752|mmu-mir-7008	microRNA 7008	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85111482-4	chr12	85110997	85111997	+	958.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030225, intron 1 of 14)	intron (NM_030225, intron 1 of 14)	664.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-66158740-4	chr2	66158214	66159214	+	958.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33921.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108182980-4	chr8	108182467	108183467	+	958.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	401710.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	7.5	0.0	0.0	0.0	2.0	0.0
Merged-chr10-41473403-2	chr10	41472903	41473903	+	958.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2911.0	NM_001164433	171580.0	Mm.290431	NM_138315	ENSMUSG00000019823	Mical1	MICAL|MICAL-1|Nical	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11244420-4	chr19	11243919	11244919	+	958.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045317, intron 1 of 2)	intron (NR_045317, intron 1 of 2)	21732.0	NM_007641	12482.0	Mm.4046	NM_007641	ENSMUSG00000024673	Ms4a1	AA960661|Cd20|Ly-44|Ms4a2	membrane-spanning 4-domains, subfamily A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74874681-4	chr17	74874255	74875255	+	958.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-130774.0	NM_019919	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	0.0	5.0	0.0	0.0	1.0	2.5
Merged-chr17-7931764-4	chr17	7931257	7932257	+	958.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145968, intron 8 of 9)	intron (NM_145968, intron 8 of 9)	5757.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25592277-4	chr9	25591775	25592775	+	958.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 6 of 7)	intron (NM_026189, intron 6 of 7)	110678.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88304650-4	chr7	88304148	88305148	+	958.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009982, intron 5 of 6)	intron (NM_009982, intron 5 of 6)	26563.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	6.5	17.0	6.0	13.5	1.0	17.5
Merged-chr2-119336094-4	chr2	119335598	119336598	+	958.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019454)	TTS (NM_019454)	-9901.0	NR_030683	100043609.0	Mm.185068	NR_030683	ENSMUSG00000074912	Gm14207	Dll4	predicted gene 14207	ncRNA	29.5	25.0	15.0	29.5	30.5	32.5
Merged-chr6-134225711-4	chr6	134225198	134226198	+	958.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 4 of 8)	intron (NM_001303102, intron 4 of 8)	-170631.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111675899-4	chr12	111675386	111676386	+	958.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2219.0	NM_001099792	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-105485147-4	chr11	105484658	105485658	+	958.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-28423.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-142861189-4	chr2	142860681	142861681	+	958.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 3 of 26)	intron (NM_001355123, intron 3 of 26)	40283.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20868741-4	chr9	20868250	20869250	+	958.841675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175687, exon 1 of 8)	5' UTR (NM_175687, exon 1 of 8)	108.0	NM_175687	319278.0	Mm.249932	NM_175687	ENSMUSG00000038884	A230050P20Rik	RyDEN	RIKEN cDNA A230050P20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10946864-4	chr19	10946356	10947356	+	958.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023731, intron 1 of 3)	intron (NM_023731, intron 1 of 3)	2410.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96497570-2	chr3	96497070	96498070	+	958.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27615.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	0.0	1.0	0.0	0.0	1.0	0.0
Merged-chr14-17966625-2	chr14	17966125	17967125	+	958.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 4 of 9)	intron (NM_001113417, intron 4 of 9)	-15019.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64011137-2	chr9	64010637	64011637	+	958.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 2 of 3)	intron (NM_008542, intron 2 of 3)	10922.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-106155408-4	chr14	106154926	106155926	+	958.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49228.0	NR_073203	212085.0	Mm.78128	NM_198601	ENSMUSG00000022113	Trim52	4921513B05Rik	tripartite motif-containing 52	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-42910628-4	chr17	42910123	42911123	+	958.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-34199.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38440879-2	chr18	38440379	38441379	+	958.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	21972.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54619102-4	chr11	54618590	54619590	+	958.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 7 of 28)	intron (NM_001252494, intron 7 of 28)	22944.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53206080-3	chr15	53205591	53206591	+	958.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	140092.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128519534-3	chr8	128519053	128520053	+	958.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	160312.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	1.0	0.5	3.0	2.5	0.0	2.5
Merged-chr13-64306296-4	chr13	64305786	64306786	+	958.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025370, intron 4 of 5)	intron (NM_025370, intron 4 of 5)	6424.0	NM_025370	66129.0	Mm.491110	NM_025370	ENSMUSG00000021482	Aaed1	1110018J18Rik|AI849003	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding	0.0	0.0	1.0	8.5	5.5	3.0
Merged-chr17-48408585-3	chr17	48408038	48409038	+	958.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110832, intron 1 of 9)	intron (NM_001110832, intron 1 of 9)	1282.0	NM_001110832	18044.0	Mm.4929	NM_010913	ENSMUSG00000023994	Nfya	AA407810|Cbf-b|SEZ-10|SEZ10	nuclear transcription factor-Y alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46852670-6	chr8	46852167	46853167	+	958.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112922.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141057206-4	chr7	141056701	141057701	+	958.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4073.0	NM_177897	330671.0	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-41468080-3	chr3	41467613	41468613	+	958.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	25086.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106901618-4	chr1	106901110	106902110	+	958.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32839.0	NM_027971	71869.0	Mm.321740	NM_027971	ENSMUSG00000059956	Serpinb12	2300003F07Rik|4833409F13Rik	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90465407-5	chr3	90464765	90465765	+	958.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008727, exon 1 of 22)	exon (NM_008727, exon 1 of 22)	601.0	NM_008727	18160.0	Mm.4627	NM_008727	ENSMUSG00000027931	Npr1	AI893888|GC-A|NPR-A|NPRA|Pndr	natriuretic peptide receptor 1	protein-coding	0.0	2.5	0.0	1.5	0.0	2.0
Merged-chr17-31305074-4	chr17	31304560	31305560	+	958.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242427, intron 2 of 19)	intron (NM_001242427, intron 2 of 19)	8836.0	NM_001242427	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85379432-4	chr12	85378935	85379935	+	958.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-4718.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-74402551-3	chr18	74402050	74403050	+	958.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30|LTR|ERV1	-40069.0	NM_201600	17919.0	Mm.260098	NM_008661	ENSMUSG00000025885	Myo5b	AI661750|mKIAA1119	myosin VB	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74454497-3	chr17	74454007	74455007	+	958.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 1 of 8)	RLTR26B_MM|LTR|ERVK	4601.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-57847294-9	chr3	57846763	57847763	+	958.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019410, intron 1 of 2)	CpG	494.0	NM_019410	18645.0	Mm.271744	NM_019410	ENSMUSG00000027805	Pfn2	Pfn	profilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181930874-4	chr2	181930361	181931361	+	958.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR33|LTR|ERVK	-60365.0	NM_001205282	672125.0	Mm.489571	NM_001205282	ENSMUSG00000098505	Gm14496	-	predicted gene 14496	protein-coding	0.0	0.0	1.5	0.0	0.0	1.5
Merged-chr6-51178654-4	chr6	51178141	51179141	+	958.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	91269.0	NR_029719	387166.0		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	0.0	4.5	1.0	0.5	4.0	1.5
Merged-chr6-73210620-4	chr6	73210123	73211123	+	958.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164669, intron 2 of 76)	ORR1D1|LTR|ERVL-MaLR	11008.0	NM_001164669	330355.0	Mm.333166	NM_001164669	ENSMUSG00000052861	Dnah6	9830168K20|A730004I20Rik|Dnahc6|mKIAA1697|mdhc6	dynein, axonemal, heavy chain 6	protein-coding	1.0	0.0	1.5	0.0	0.0	0.0
Merged-chr6-17779005-4	chr6	17778575	17779575	+	958.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	B3A|SINE|B2	29905.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	1.0	15.5	1.0	7.0	1.0	2.5
Merged-chr11-20740614-4	chr11	20740106	20741106	+	958.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181411, intron 1 of 8)	intron (NM_181411, intron 1 of 8)	950.0	NM_001290545	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	67.0	128.0	113.0	66.5	148.0	78.5
Merged-chr16-38550211-4	chr16	38549688	38550688	+	958.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001300827)	promoter-TSS (NM_001300827)	68.0	NR_153380	224143.0	Mm.284366	NM_172380	ENSMUSG00000034064	Poglut1	9630046K23Rik|Clp46|Ktelc1|Rumi|wsnp	protein O-glucosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75564789-4	chr11	75564277	75565277	+	958.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 9 of 13)	intron (NM_001199284, intron 9 of 13)	13348.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	22.5	122.5	63.5	40.0	127.5	71.0
Merged-chr10-37138488-2	chr10	37137988	37138988	+	958.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_008538, exon 1 of 2)	exon (NM_008538, exon 1 of 2)	438.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	11.5	42.5	28.0	11.5	40.5	29.5
Merged-chr18-65704214-4	chr18	65703848	65704848	+	958.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177028, intron 1 of 14)	intron (NM_177028, intron 1 of 14)	6080.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	26.0	17.5	20.0	13.5	46.0	28.5
Merged-chr3-122122266-4	chr3	122121769	122122769	+	958.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007378, intron 19 of 49)	intron (NM_007378, intron 19 of 49)	77809.0	NM_007378	11304.0	Mm.3918	NM_007378	ENSMUSG00000028125	Abca4	AW050280|Abc10|Abcr|D430003I15Rik|RmP	ATP-binding cassette, sub-family A (ABC1), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-84211647-3	chr7	84211175	84212175	+	958.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59782.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	5.0	4.0	13.0	0.0	0.0	1.5
Merged-chr4-124696036-4	chr4	124695570	124696570	+	958.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2516.0	NM_026031	67205.0	Mm.259121	NM_026031	ENSMUSG00000028907	Utp11	2700082D03Rik|CGI-94|Cgi94|Utp11l	UTP11 small subunit processome component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96636661-4	chr9	96636119	96637119	+	958.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5116.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	0.0	2.5	1.5	0.0	2.5	0.0
Merged-chr17-88112032-4	chr17	88111544	88112544	+	958.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13468.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88334132-4	chr10	88333634	88334634	+	958.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 4 of 6)	intron (NM_027878, intron 4 of 6)	22941.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59728751-2	chr9	59728251	59729251	+	958.7000119999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	20987.0	NM_001033498	546134.0	Mm.297580	NM_001033498	ENSMUSG00000074259	Gramd2	BC064463|Gramd2a	GRAM domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70653325-4	chr11	70652815	70653815	+	958.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011072, intron 1 of 2)	G-rich|Low_complexity|Low_complexity	1335.0	NM_011072	18643.0	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-109139583-3	chr7	109139058	109140058	+	958.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302205, intron 3 of 3)	intron (NM_001302205, intron 3 of 3)	30954.0	NM_001302206	109594.0	Mm.360145	NM_057173	ENSMUSG00000036111	Lmo1	Rbtn-1|Rbtn1|Ttg1	LIM domain only 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29147657-4	chr11	29147151	29148151	+	958.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027869, intron 17 of 27)	intron (NM_027869, intron 17 of 27)	16900.0	NM_027869	71701.0	Mm.211131	NM_027869	ENSMUSG00000020464	Pnpt1	1200003F12Rik|Old35|PNPase|Pnptl1	polyribonucleotide nucleotidyltransferase 1	protein-coding	54.5	118.0	128.0	4.0	34.0	18.5
Merged-chr15-84254341-6	chr15	84253850	84254850	+	958.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	Tigger17c|DNA|TcMar-Tigger	22307.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	13.5	29.5	30.5	11.5	4.5	3.5
Merged-chr3-30572488-3	chr3	30571964	30572964	+	958.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19-int|LTR|ERVK	27406.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	10.0	4.5	18.0	4.5	13.0	12.0
Merged-chr2-102750144-3	chr2	102749663	102750663	+	958.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077514, intron 6 of 10)	intron (NM_001077514, intron 6 of 10)	-3403.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90255989-3	chr9	90255525	90256525	+	958.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	14744.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	5.0	0.0	12.5	5.0	6.0	5.0
Merged-chr1-95613556-3	chr1	95613065	95614065	+	958.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009183, intron 4 of 4)	intron (NM_009183, intron 4 of 4)	54029.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73234710-4	chr14	73234215	73235215	+	958.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 17 of 26)	intron (NM_009029, intron 17 of 26)	-3176.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-5241896-3	chr15	5241384	5242384	+	958.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136079, intron 2 of 2)	intron (NM_001136079, intron 2 of 2)	2303.0	NM_001136079	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13833986-4	chr10	13833547	13834547	+	958.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025446, intron 1 of 5)	intron (NM_025446, intron 1 of 5)	34910.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	115.0	175.0	155.0	27.5	65.5	68.5
Merged-chr4-89458786-4	chr4	89458267	89459267	+	958.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132431, intron 7 of 9)	intron (NR_132431, intron 7 of 9)	-147735.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33818897-2	chr17	33818446	33819446	+	958.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_030697, exon 5 of 11)	exon (NM_030697, exon 5 of 11)	5616.0	NM_016844	54127.0	Mm.352374	NM_016844	ENSMUSG00000067288	Rps28	-	ribosomal protein S28	protein-coding	4.0	9.5	6.0	0.0	10.0	5.5
Merged-chr2-34779584-7	chr2	34779100	34780100	+	958.657166	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145522, intron 7 of 7)	intron (NM_145522, intron 7 of 7)	7510.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24896501-4	chr17	24895997	24896997	+	958.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019730)	promoter-TSS (NM_019730)	-3.0	NM_019730	79059.0	Mm.430765	NM_019730	ENSMUSG00000073435	Nme3	1810009F08Rik|AI413736|DR-nm23|Ndk3|Nm23-DR|Nm23-M3	NME/NM23 nucleoside diphosphate kinase 3	protein-coding	10.5	17.0	9.5	15.0	27.0	15.5
Merged-chr5-72820802-4	chr5	72820298	72821298	+	958.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	47650.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67194323-4	chr17	67193843	67194843	+	958.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	160116.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	14.5	24.5	26.5	11.5	22.5	19.0
Merged-chr19-46484294-4	chr19	46483795	46484795	+	958.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 11 of 11)	intron (NM_001025391, intron 11 of 11)	-17353.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95810610-4	chr16	95810112	95811112	+	958.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88101.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154159180-4	chr4	154158636	154159636	+	958.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151647, intron 3 of 3)	intron (NR_151647, intron 3 of 3)	1548.0	NR_151647	67808.0	Mm.288737	NM_026388	ENSMUSG00000029030	Tprgl	1200015A19Rik|Svap30|Tprg1l|mover	transformation related protein 63 regulated like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-97772783-4	chr4	97772253	97773253	+	958.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-4873.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-12161417-4	chr5	12160911	12161911	+	958.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-221755.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64299024-2	chr5	64298515	64299515	+	958.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 11 of 18)	intron (NM_001289514, intron 11 of 18)	68658.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	42.5	59.0	80.5	1.0	11.0	0.5
Merged-chr14-78790599-3	chr14	78790098	78791098	+	958.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57869.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.0	0.0	0.0	0.0	1.5	0.0
Merged-chr16-33902102-4	chr16	33901599	33902599	+	958.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 7 of 14)	intron (NM_001145884, intron 7 of 14)	64939.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93081204-4	chr1	93080660	93081660	+	958.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294150, intron 1 of 46)	intron (NM_001294150, intron 1 of 46)	1320.0	NM_001294150	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35165807-3	chr17	35165307	35166307	+	958.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020027)	promoter-TSS (NM_020027)	-930.0	NM_020027	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58804411-3	chr9	58803952	58804952	+	958.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-19060.0	NM_001081192	330953.0	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88868287-6	chr4	88867715	88868715	+	958.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	11986.0	NM_177348	230405.0	Mm.246593	NM_177348	ENSMUSG00000045364	Ifne	Ifn-tau-1|Ifne1|Ifnt1|Infe1	interferon epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-186182750-3	chr1	186182245	186183245	+	958.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65435.0	NM_146106	226791.0	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73511206-3	chr2	73510707	73511707	+	958.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	RSINE1|SINE|B4	18280.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39774670-4	chr10	39774168	39775168	+	958.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011264, intron 1 of 31)	intron (NM_011264, intron 1 of 31)	42508.0	NM_011264	19714.0	Mm.439723	NM_011264	ENSMUSG00000019841	Rev3l	Rev|Rev3|Sez4	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47395633-4	chr19	47395115	47396115	+	958.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 3 of 14)	intron (NM_008018, intron 3 of 14)	68796.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	2.5	3.5	17.0	5.5	2.5	11.5
Merged-chr17-34398298-4	chr17	34397758	34398758	+	958.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001177)	promoter-TSS (NM_001001177)	-562.0	NM_001001177	407788.0	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	15.0	73.0	25.0	0.0	39.5	22.0
Merged-chr7-80500348-4	chr7	80499836	80500836	+	958.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042527, intron 7 of 21)	intron (NM_001042527, intron 7 of 21)	34662.0	NM_007550	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4573499-4	chr2	4573011	4574011	+	958.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 3 of 11)	MTD|LTR|ERVL-MaLR	13757.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-45390025-4	chr16	45389534	45390534	+	958.5125119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358443, intron 4 of 4)	intron (NM_001358443, intron 4 of 4)	19019.0	NM_001358443	17470.0	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	2.0	3.5	6.0	1.5	1.0	1.0
Merged-chr6-136721210-4	chr6	136720679	136721679	+	958.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145067, intron 16 of 25)	B4A|SINE|B4	-59286.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	0.5	16.0	4.5	8.0	4.5	6.5
Merged-chr19-46649879-2	chr19	46649351	46650351	+	958.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177813, intron 2 of 3)	intron (NM_001177813, intron 2 of 3)	23149.0	NM_007809	13074.0	Mm.1262	NM_007809	ENSMUSG00000003555	Cyp17a1	Cyp17|p450c17	cytochrome P450, family 17, subfamily a, polypeptide 1	protein-coding	4.0	1.5	7.5	0.0	13.5	3.0
Merged-chr10-80034200-4	chr10	80033674	80034674	+	958.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	5485.0	NM_025554	66420.0	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97303271-2	chr6	97302771	97303771	+	958.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 18 of 23)	intron (NM_145148, intron 18 of 23)	-50491.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68459127-2	chr11	68458627	68459627	+	958.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	27002.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55217785-4	chr19	55217275	55218275	+	958.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 12 of 20)	intron (NM_001081076, intron 12 of 20)	23461.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92038131-4	chr16	92037622	92038622	+	958.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20200.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45051594-2	chr2	45051094	45052094	+	958.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-28417.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139488470-2	chr5	139487970	139488970	+	958.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3979.0	NM_001159908	100494.0	Mm.24521	NM_133349	ENSMUSG00000053581	Zfand2a	AA407930|AU016206|Airap	zinc finger, AN1-type domain 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124328662-2	chr5	124328162	124329162	+	958.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277867)	promoter-TSS (NM_001277867)	573.0	NM_001134717	72650.0	Mm.121658	NM_028310	ENSMUSG00000047635	2810006K23Rik	-	RIKEN cDNA 2810006K23 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84284597-4	chr1	84284108	84285108	+	958.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001003948)	promoter-TSS (NM_001003948)	37.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70110931-3	chr12	70110490	70111490	+	958.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286079, intron 1 of 28)	intron (NM_001286079, intron 1 of 28)	639.0	NR_104398	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	0.0	1.0	0.0	2.5	28.0	5.0
Merged-chr2-174463643-2	chr2	174463143	174464143	+	958.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025983, intron 1 of 2)	intron (NM_025983, intron 1 of 2)	458.0	NM_025983	67126.0	Mm.20841	NM_025983	ENSMUSG00000016252	Atp5e	2410043G19Rik|ATPE|AV000645|Atp5f1e	ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135720635-2	chr5	135720135	135721135	+	958.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 2 of 15)	intron (NM_008898, intron 2 of 15)	15254.0	NR_106001	102466791.0		NR_106001	ENSMUSG00000099197	Mir7034	Gm27372|mmu-mir-7034	microRNA 7034	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99012898-2	chr10	99012398	99013398	+	958.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 15 of 21)	intron (NM_001359507, intron 15 of 21)	-94184.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65190756-2	chr18	65190247	65191247	+	958.5	f0_c57.idr|f1_c57bl6.idr	intron (NM_001114386, intron 19 of 30)	intron (NM_001114386, intron 19 of 30)	-58114.0	NR_029600	387231.0		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	7.5	12.0	10.0	0.0	5.5	0.0
Merged-chr14-27414126-2	chr14	27413626	27414626	+	958.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14708.0	NM_028945	218850.0	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-33008700-2	chr5	33008200	33009200	+	958.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10116.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	2.0	1.0	0.0	2.5	4.5	6.0
Merged-chr7-27328182-2	chr7	27327682	27328682	+	958.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113549, intron 7 of 29)	intron (NM_001113549, intron 7 of 29)	5466.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90275561-10	chr9	90275065	90276065	+	958.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-4796.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	52.0	204.5	117.0	79.0	170.5	105.5
Merged-chr18-64510257-4	chr18	64509779	64510779	+	958.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142950, intron 6 of 14)	intron (NM_001142950, intron 6 of 14)	6278.0	NM_027350	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45179474-4	chr9	45178976	45179976	+	958.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145403, intron 6 of 12)	intron (NM_145403, intron 6 of 12)	-16290.0	NM_001198971	408059.0	Mm.249297	NM_001198971	ENSMUSG00000091996	BC049352	SMIM35	cDNA sequence BC049352	protein-coding	16.0	59.0	24.0	41.0	81.0	65.0
Merged-chr7-91457402-3	chr7	91456905	91457905	+	958.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011807, intron 2 of 22)	intron (NM_011807, intron 2 of 22)	366619.0	NM_011807	23859.0	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs large MAGUK scaffold protein 2	protein-coding	0.0	3.0	0.0	0.0	0.0	0.0
Merged-chr2-162930012-3	chr2	162929473	162930473	+	958.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1535.0	NM_026499	67996.0	Mm.24042	NM_026499	ENSMUSG00000016921	Srsf6	1210001E11Rik|AI314910|AW146126|Sfrs6	serine/arginine-rich splicing factor 6	protein-coding	1.5	8.0	7.0	12.5	11.0	5.5
Merged-chr4-126204868-4	chr4	126204361	126205361	+	958.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2151.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	87.0	216.0	98.0	46.5	136.5	76.0
Merged-chr7-141370763-4	chr7	141370263	141371263	+	958.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-5653.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75775897-4	chr2	75775395	75776395	+	958.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56282.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	35.0	114.5	56.0	20.5	42.0	53.0
Merged-chr13-41601204-4	chr13	41600722	41601722	+	958.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-4994.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180970556-2	chr2	180970038	180971038	+	958.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145760, intron 2 of 13)	intron (NM_145760, intron 2 of 13)	3238.0	NM_001177706	228998.0	Mm.33765	NM_145760	ENSMUSG00000027575	Arfgap1	AI115377|Arf1gap	ADP-ribosylation factor GTPase activating protein 1	protein-coding	8.0	26.0	20.0	7.5	6.5	4.5
Merged-chr8-121643594-5	chr8	121643034	121644034	+	958.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080855, intron 1 of 12)	intron (NM_080855, intron 1 of 12)	8399.0	NM_080855	142682.0	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62575437-4	chr11	62574947	62575947	+	958.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011706, intron 1 of 15)	intron (NM_011706, intron 1 of 15)	961.0	NM_011706	22368.0	Mm.288064	NM_011706	ENSMUSG00000018507	Trpv2	GRC|OTRPC2|VRL-1|Vrl1	transient receptor potential cation channel, subfamily V, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23659058-4	chr11	23658571	23659571	+	958.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023651, intron 1 of 3)	intron (NM_023651, intron 1 of 3)	-6603.0	NM_028956	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111145720-4	chr9	111145196	111146196	+	958.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027742, intron 3 of 13)	intron (NM_027742, intron 3 of 13)	27585.0	NM_001164838	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-78507396-4	chr1	78506875	78507875	+	958.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3685.0	NM_026713	68393.0	Mm.41325	NM_026713	ENSMUSG00000012187	Mogat1	0610030A14Rik|1110064N14Rik|Dgat2l|Dgat2l1|MGAT1|WI1-2612I11.1|mDC2	monoacylglycerol O-acyltransferase 1	protein-coding	1.0	0.0	4.0	1.5	3.0	1.5
Merged-chr10-110918946-8	chr10	110918438	110919438	+	958.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1238.0	NM_007792	13008.0	Mm.2020	NM_007792	ENSMUSG00000020186	Csrp2	AW551867|Crp2|SmLim	cysteine and glycine-rich protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84037102-4	chr3	84036550	84037550	+	958.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172681, intron 2 of 34)	intron (NM_172681, intron 2 of 34)	3111.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-38433722-4	chr3	38433205	38434205	+	958.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51111.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98948102-4	chr11	98947580	98948580	+	958.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177302, intron 2 of 9)	L1MB8|LINE|L1	8369.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98725335-4	chr10	98724833	98725833	+	958.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-189309.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-63996696-3	chr15	63996198	63997198	+	958.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144846, intron 1 of 11)	intron (NM_144846, intron 1 of 11)	1368.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116216900-3	chr9	116216416	116217416	+	958.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	27736.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	0.5	2.0	0.0	2.5	7.5	1.5
Merged-chr6-108696055-4	chr6	108695559	108696559	+	958.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35125.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131698968-4	chr1	131698482	131699482	+	958.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311096, intron 4 of 4)	intron (NM_001311096, intron 4 of 4)	10287.0	NM_145509	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	16.5	35.5	20.0	4.5	24.5	27.0
Merged-chr13-25562874-3	chr13	25562367	25563367	+	958.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-292871.0	NM_009513	22360.0	Mm.4766	NM_009513	ENSMUSG00000048978	Nrsn1	Neurensin-1|Neuro-p24|Vmp	neurensin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-66494996-3	chr8	66494496	66495496	+	958.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8466.0	NM_001357208	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161361867-3	chr1	161361372	161362372	+	958.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33566.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	0.0	2.0	0.0	0.5	0.0	1.0
Merged-chr10-67097989-3	chr10	67097484	67098484	+	958.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204915)	promoter-TSS (NM_001204915)	-996.0	NM_178606	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55838310-4	chr1	55837794	55838794	+	958.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92947.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43303000-4	chr1	43302491	43303491	+	958.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106230.0	NM_001289533	14200.0	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21602155-4	chr9	21601669	21602669	+	958.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6160.0	NR_003372	666043.0	Mm.247282	NR_003372		Gm7904	EG666043	predicted gene 7904	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62480615-5	chr4	62480110	62481110	+	958.2999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138653, intron 1 of 6)	intron (NM_138653, intron 1 of 6)	543.0	NM_138653	192120.0	Mm.29808	NM_138653	ENSMUSG00000028392	Bspry	-	B-box and SPRY domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64900432-4	chr5	64899933	64900933	+	958.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32266.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-15297477-4	chr10	15296961	15297961	+	958.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-494316.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181090329-4	chr2	181089844	181090844	+	958.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003824, intron 10 of 16)	intron (NM_001003824, intron 10 of 16)	44945.0	NM_001006668	16536.0	Mm.40615	NM_010611	ENSMUSG00000016346	Kcnq2	HNSPC|KQT2|Nmf134	potassium voltage-gated channel, subfamily Q, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123667664-3	chr4	123667179	123668179	+	958.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_136925, exon 2 of 4)	non-coding (NR_136925, exon 2 of 4)	1798.0	NR_136925	102633214.0	Mm.399387	NR_136925		Gm12925	-	predicted gene 12925	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-50438223-3	chr3	50437706	50438706	+	958.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011990, intron 2 of 11)	intron (NM_011990, intron 2 of 11)	5407.0	NM_011990	26570.0	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.5	9.5	4.5	0.0	0.5	3.0
Merged-chr13-48967251-8	chr13	48966747	48967747	+	958.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015601)	promoter-TSS (NR_015601)	581.0	NM_001033268	218236.0	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59294369-4	chr9	59293876	59294876	+	958.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359282, intron 1 of 6)	intron (NM_001359282, intron 1 of 6)	2804.0	NM_028121	72141.0	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81399492-2	chr10	81398992	81399992	+	958.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008688, exon 10 of 10)	3' UTR (NM_008688, exon 10 of 10)	6428.0	NM_001099917	72273.0	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-118428712-4	chr4	118428197	118429197	+	958.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039175, intron 1 of 6)	intron (NM_001039175, intron 1 of 6)	604.0	NM_019422	54325.0	Mm.282096	NM_019422	ENSMUSG00000006390	Elovl1	AA407424|BB151133|Ssc1	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	protein-coding	19.5	48.0	40.0	19.0	65.5	51.0
Merged-chr17-33702378-4	chr17	33701856	33702856	+	958.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252480, intron 3 of 4)	B1F2|SINE|Alu	16321.0	NM_145486	224703.0	Mm.311439	NM_145486	ENSMUSG00000079557	March2	9530046H09Rik|MARCH-II	membrane-associated ring finger (C3HC4) 2	protein-coding	5.5	2.0	3.5	2.5	2.0	3.0
Merged-chr19-4127705-2	chr19	4127205	4128205	+	958.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001078649, intron 4 of 7)	intron (NM_001078649, intron 4 of 7)	1745.0	NM_025889	66990.0	Mm.276255	NM_025889		Tmem134	2410001H17Rik|AI463452	transmembrane protein 134	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55315928-4	chr19	55315432	55316432	+	958.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293685)	promoter-TSS (NM_001293685)	104.0	NM_001360595	66980.0	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6	zinc finger, DHHC domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138265176-4	chr5	138264681	138265681	+	958.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347507, exon 4 of 4)	3' UTR (NM_001347507, exon 4 of 4)	-1129.0	NM_153161	231807.0	Mm.164493	NM_153161	ENSMUSG00000036948	BC037034	-	cDNA sequence BC037034	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-16181413-4	chr3	16180919	16181919	+	958.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-1746.0	NM_001358043	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	7.0	18.5	9.0	5.5	6.0	6.0
Merged-chr12-69790677-4	chr12	69790180	69791180	+	958.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183294)	promoter-TSS (NM_183294)	27.0	NM_183294	71091.0	Mm.132325	NM_183294	ENSMUSG00000020990	Cdkl1	4933411O17Rik	cyclin-dependent kinase-like 1 (CDC2-related kinase)	protein-coding	0.0	1.5	0.0	0.0	1.0	0.0
Merged-chr17-34631590-2	chr17	34631090	34632090	+	958.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_030890, intron 2 of 3)	intron (NM_030890, intron 2 of 3)	1904.0	NM_030890	260297.0	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31|SynDIG4	proline-rich transmembrane protein 1	protein-coding	6.0	2.5	3.5	0.0	6.0	5.0
Merged-chr7-98178910-4	chr7	98178411	98179411	+	958.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007602)	promoter-TSS (NM_007602)	-637.0	NM_007602	12337.0	Mm.326847	NM_007602	ENSMUSG00000035547	Capn5	nCL-3	calpain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107986575-4	chr9	107986070	107987070	+	958.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026597)	promoter-TSS (NM_026597)	-654.0	NM_026597	68176.0	Mm.76166	NM_026597	ENSMUSG00000042106	Fam212a	6230427J02Rik|Inka1	family with sequence similarity 212, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85608574-2	chr1	85608077	85609077	+	958.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013817, intron 1 of 16)	intron (NM_001013817, intron 1 of 16)	-4686.0	NM_175397	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171053562-4	chr1	171053050	171054050	+	958.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356511, intron 4 of 4)	intron (NM_001356511, intron 4 of 4)	5844.0	NM_001356511	14131.0	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	9.0	45.0	30.5	3.5	42.0	34.5
Merged-chr12-117385508-4	chr12	117385005	117386005	+	958.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48493.0	NR_044987	432713.0	Mm.459210	NR_044987	ENSMUSG00000101930	Gm5441	-	predicted gene 5441	ncRNA	5.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46842448-4	chr11	46841949	46842949	+	958.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178759, intron 8 of 8)	(A)n|Simple_repeat|Simple_repeat	31650.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	30.0	54.0	47.0	46.5	50.0	95.0
Merged-chr9-90261515-3	chr9	90261012	90262012	+	958.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	9257.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29416535-3	chr17	29416050	29417050	+	958.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55636.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	4.0	0.0	0.5	4.0	0.0	0.5
Merged-chr6-115523178-3	chr6	115522676	115523676	+	958.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21528.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144188392-4	chr2	144187940	144188940	+	958.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136884, intron 1 of 3)	(TG)n|Simple_repeat|Simple_repeat	850.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-113770534-4	chr7	113770039	113771039	+	958.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145584, intron 1 of 15)	intron (NM_145584, intron 1 of 15)	4541.0	NM_145584	233744.0	Mm.334160	NM_145584	ENSMUSG00000038156	Spon1	AI666765|AW455831|BC020531|D330035F22Rik|FSP	spondin 1, (f-spondin) extracellular matrix protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-60663208-4	chr19	60662707	60663707	+	958.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-82184.0	NM_001172096	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	15.5	17.0	15.5	4.5	21.5	8.5
Merged-chr3-79438438-4	chr3	79437954	79438954	+	958.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142953, intron 3 of 4)	intron (NM_001142953, intron 3 of 4)	93078.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44016386-4	chr16	44015886	44016886	+	958.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153528)	promoter-TSS (NM_153528)	50.0	NM_153528	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25461962-4	chr14	25461475	25462475	+	958.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	2790.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	8.5	33.0	16.0	11.5	25.5	27.5
Merged-chr6-97489025-4	chr6	97488527	97489527	+	958.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-1207.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	82.5	230.0	165.5	67.0	203.5	172.0
Merged-chr2-43561390-4	chr2	43560896	43561896	+	958.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289593, intron 1 of 12)	intron (NM_001289593, intron 1 of 12)	6071.0	NM_027552	70789.0	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25096981-4	chr8	25096492	25097492	+	958.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 1 of 11)	intron (NM_031257, intron 1 of 11)	4819.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4144091-4	chr19	4143585	4144585	+	958.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_206973, exon 2 of 2)	3' UTR (NM_206973, exon 2 of 2)	4286.0	NM_206973	269053.0	Mm.131677	NM_206973	ENSMUSG00000044724	Gpr152	A930009H15Rik|Gm673	G protein-coupled receptor 152	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114930076-2	chr6	114929576	114930576	+	958.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	-8255.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152344134-6	chr2	152343625	152344625	+	958.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175093)	promoter-TSS (NM_175093)	-65.0	NM_175093	228775.0	Mm.276018	NM_144554	ENSMUSG00000032715	Trib3	Ifld2|Nipk|SINK|SKIP3|TRB-3|Trb3	tribbles pseudokinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70755194-4	chr8	70754687	70755687	+	958.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166399, intron 1 of 4)	CpG	508.0	NM_001166399	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	17.5	13.5	31.0	4.5	7.5	12.0
Merged-chr16-94568023-2	chr16	94567523	94568523	+	958.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2183.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99213976-3	chr5	99213494	99214494	+	958.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38933.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	36.0	41.5	35.5	36.0	40.5	35.0
Merged-chr17-23960562-4	chr17	23960045	23961045	+	958.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5272.0	NM_001077421	638345.0	Mm.46428	NM_001077421	ENSMUSG00000024125	Sbpl	2310068J22Rik	spermine binding protein-like	protein-coding	7.5	14.5	2.0	0.0	4.0	0.0
Merged-chr6-134531484-4	chr6	134530986	134531986	+	958.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 2 of 22)	intron (NM_008514, intron 2 of 22)	35427.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	74.5	161.0	94.5	57.0	84.0	57.0
Merged-chr17-84028705-4	chr17	84028220	84029220	+	958.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30168.0	NR_130994	78148.0	Mm.243918	NR_130994		8430430B14Rik	-	RIKEN cDNA 8430430B14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6602635-4	chr15	6602129	6603129	+	958.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011815, intron 1 of 17)	intron (NM_011815, intron 1 of 17)	22782.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34653599-4	chr13	34653109	34654109	+	958.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025831)	promoter-TSS (NM_025831)	686.0	NR_105041	101056149.0	Mm.421309	NR_105041	ENSMUSG00000086786	Gm15908	-	predicted gene 15908	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78069746-4	chr10	78069246	78070246	+	958.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015790, intron 1 of 6)	CpG	378.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64048700-4	chr13	64048206	64049206	+	958.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40495.0	NM_008291	15487.0	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	3.0	0.0	1.0	0.0	0.0	4.0
Merged-chr10-130228479-3	chr10	130227979	130228979	+	958.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17351.0	NM_146300	258297.0	Mm.377419	NM_146300	ENSMUSG00000045559	Olfr827	MOR210-5	olfactory receptor 827	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88622295-4	chr10	88621796	88622796	+	958.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17144.0	NM_175418	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	13.0	46.0	28.5	27.0	75.0	50.5
Merged-chr9-61513585-3	chr9	61513018	61514018	+	958.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	141152.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108627585-4	chr12	108627073	108628073	+	958.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163395, intron 1 of 12)	intron (NM_001163395, intron 1 of 12)	-8180.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-116894062-4	chr2	116893538	116894538	+	958.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR3|LTR|Gypsy	-6114.0	NR_040336	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87499107-8	chr3	87498622	87499622	+	958.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113238, intron 11 of 11)	intron (NM_001113238, intron 11 of 11)	-26456.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	46.5	190.5	141.5	48.5	160.0	199.5
Merged-chr2-124577100-4	chr2	124576585	124577585	+	958.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-33211.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-37955590-4	chr18	37955103	37956103	+	958.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153793)	promoter-TSS (NM_153793)	44.0	NM_153793	225392.0	Mm.233516	NM_153793	ENSMUSG00000044024	Rell2	4631403P03Rik|ependolin	RELT-like 2	protein-coding	6.0	3.5	5.0	1.0	3.5	12.0
Merged-chr10-95357928-4	chr10	95357441	95358441	+	958.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045337, intron 1 of 2)	ORR1F|LTR|ERVL-MaLR	21665.0	NR_045337	69629.0	Mm.250542	NR_045337	ENSMUSG00000100550	2310039L15Rik	A53T-syn|G2-3|PrPsynA53T|Tg(Prnp-SNCA*A53T)23Mkle	RIKEN cDNA 2310039L15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-118066335-3	chr6	118065833	118066833	+	958.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027526)	promoter-TSS (NM_027526)	-52.0	NM_027526	70727.0	Mm.87660	NM_027526	ENSMUSG00000030134	Rasgef1a	6330404M18Rik|AI835194	RasGEF domain family, member 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22438890-3	chr16	22438415	22439415	+	958.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358428)	promoter-TSS (NM_001358428)	-547.0	NM_001358428	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118118585-4	chr7	118118098	118119098	+	958.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019419)	TTS (NM_019419)	-2451.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	28.5	67.5	55.5	29.0	78.0	73.5
Merged-chr11-94128083-4	chr11	94127541	94128541	+	958.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83413.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43711287-4	chr19	43710819	43711819	+	958.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053103, intron 5 of 12)	intron (NM_053103, intron 5 of 12)	21630.0	NM_053103	93685.0	Mm.248237	NM_053103	ENSMUSG00000025192	Entpd7	1810012B13Rik|1810020C02Rik|2810003F23Rik|LALP1|Lysal2	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding	18.0	38.0	35.5	9.5	28.0	16.0
Merged-chr9-106353979-4	chr9	106353482	106354482	+	958.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14650.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	0.0	6.0	1.0	4.0	1.0	2.0
Merged-chr11-119419509-4	chr11	119418999	119419999	+	958.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29027.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	12.0	12.5	10.5	0.5	2.5	17.5
Merged-chr1-156532213-4	chr1	156531715	156532715	+	958.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ETnERV-int|LTR|ERVK	-26572.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	54.0	95.0	76.5	33.0	84.5	54.5
Merged-chr16-37947367-2	chr16	37946867	37947867	+	958.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153394, intron 1 of 9)	intron (NM_153394, intron 1 of 9)	30871.0	NM_153394	239845.0	Mm.228018	NM_153394	ENSMUSG00000046961	Gpr156	Gababl	G protein-coupled receptor 156	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126796589-3	chr7	126796098	126797098	+	958.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001177308, exon 5 of 9)	exon (NM_001177308, exon 5 of 9)	2580.0	NM_001177307	11674.0	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56023975-2	chr17	56023475	56024475	+	958.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013664, intron 1 of 9)	intron (NM_013664, intron 1 of 9)	12662.0	NM_013664	20405.0	Mm.1773	NM_013664	ENSMUSG00000003200	Sh3gl1	C77078|EEN|SH3P8|Sh3d2b	SH3-domain GRB2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115001062-2	chr11	115000579	115001579	+	958.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134158, intron 1 of 3)	intron (NM_134158, intron 1 of 3)	801.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-115018604-4	chr7	115018092	115019092	+	958.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67318.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	13.5	37.0	30.5	24.5	17.5	7.5
Merged-chr19-45227162-2	chr19	45226662	45227662	+	958.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8074.0	NM_010691	16814.0	Mm.116815	NM_010691	ENSMUSG00000025216	Lbx1	Lbx1h	ladybird homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94725034-4	chr16	94724536	94725536	+	958.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	113617.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19406104-2	chr7	19405604	19406604	+	958.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2000.0	NM_001286039	232943.0	Mm.213403	NM_146182	ENSMUSG00000040714	Klc3	BC017147|Klct	kinesin light chain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56502746-2	chr18	56502246	56503246	+	958.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026240, exon 14 of 14)	3' UTR (NM_026240, exon 14 of 14)	-35393.0	NR_106160	102465790.0		NR_106160	ENSMUSG00000099196	Mir1258	Gm27371|mmu-mir-1258	microRNA 1258	ncRNA	0.0	0.0	0.5	0.0	10.0	2.5
Merged-chr10-94093599-3	chr10	94093097	94094097	+	958.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 5 of 20)	intron (NM_053072, intron 5 of 20)	-54334.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	35.5	74.0	39.5	9.5	5.5	12.5
Merged-chr11-17212272-1	chr11	17211772	17212772	+	958.0	f0_c57.idr	promoter-TSS (NM_025443)	promoter-TSS (NM_025443)	379.0	NM_178909	103784.0	Mm.298132	NM_178909	ENSMUSG00000078970	Wdr92	AI553587|HZGJ	WD repeat domain 92	protein-coding	30.0	103.0	70.0	27.0	102.5	78.0
Merged-chr4-88721191-2	chr4	88720691	88721691	+	958.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172871, exon 1 of 1)	exon (NM_172871, exon 1 of 1)	1317.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167367555-4	chr2	167367044	167368044	+	958.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18366.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73688624-2	chr12	73688124	73689124	+	958.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	103828.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46795514-4	chr8	46795029	46796029	+	958.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 2 of 7)	B1_Mur3|SINE|Alu	55784.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78326619-3	chr15	78326119	78327119	+	958.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358854, intron 2 of 14)	intron (NM_001358854, intron 2 of 14)	629.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	23.5	16.0	18.0	3.0	3.0	0.0
Merged-chr12-56440595-4	chr12	56440069	56441069	+	958.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88851.0	NR_045082	104798.0	Mm.310950	NR_045082	ENSMUSG00000112343	Sfta3-ps	AI413669|E030019B13Rik|Nanci	surfactant associated 3, pseudogene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110888022-4	chr9	110887523	110888523	+	958.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153354, intron 8 of 25)	intron (NR_153354, intron 8 of 25)	7701.0	NM_001146060	235633.0	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	10.0	16.5	16.0	1.5	13.5	23.5
Merged-chr2-76406515-2	chr2	76406015	76407015	+	958.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145525)	promoter-TSS (NM_145525)	7.0	NM_001290733	99031.0	Mm.240435	NM_145525	ENSMUSG00000042359	Osbpl6	1110062M20Rik|AI596402|ORP-6|mKIAA4128	oxysterol binding protein-like 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43745316-1	chr5	43744816	43745816	+	958.0	f0_balb.idr	exon (NM_001159963, exon 11 of 11)	exon (NM_001159963, exon 11 of 11)	36833.0	NM_001159963	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99338340-2	chr5	99337840	99338840	+	958.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	ORR1A2|LTR|ERVL-MaLR	-85413.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31200813-3	chr5	31200316	31201316	+	958.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175311, exon 3 of 4)	exon (NM_175311, exon 3 of 4)	1226.0	NM_001177901	101023.0	Mm.45033	NM_175311	ENSMUSG00000043059	Zfp513	AW990386|D430028M17Rik|Znf513	zinc finger protein 513	protein-coding	20.0	49.5	24.0	15.0	25.0	24.0
Merged-chr10-68251466-1	chr10	68250966	68251966	+	958.0	f1_balb.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	27260.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	5.0	17.0	6.0	5.5	13.0	13.0
Merged-chr5-93194033-2	chr5	93193533	93194533	+	958.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_017367, intron 2 of 6)	intron (NM_017367, intron 2 of 6)	12462.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	11.0	19.5	11.5	8.0	8.5	6.5
Merged-chr16-75866378-2	chr16	75865878	75866878	+	958.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023380, intron 7 of 7)	Lx4A|LINE|L1	42888.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-30719012-6	chr10	30718494	30719494	+	958.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 3 of 14)	intron (NM_001358842, intron 3 of 14)	-63127.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75839503-5	chr18	75839070	75840070	+	957.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145356, intron 1 of 4)	intron (NM_145356, intron 1 of 4)	19392.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	41.0	31.0	41.5	0.5	1.5	3.5
Merged-chr14-55763247-4	chr14	55762749	55763749	+	957.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_020490)	TTS (NM_020490)	1821.0	NM_020490	57260.0	Mm.159670	NM_020490	ENSMUSG00000040432	Ltb4r2	5830462O07Rik|BLT2|LTB4-R 2|LTB4-R-2|LTB4-R2	leukotriene B4 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-9002209-4	chr12	9001704	9002704	+	957.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172470, intron 12 of 27)	intron (NM_172470, intron 12 of 27)	-27793.0	NM_029321	75516.0	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-20005812-4	chr3	20005297	20006297	+	957.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276250, intron 19 of 19)	intron (NM_001276250, intron 19 of 19)	29513.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155273525-3	chr2	155273008	155274008	+	957.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2856.0	NM_025735	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	12.0	0.0	4.0	4.0	20.0	6.5
Merged-chr11-120624905-4	chr11	120624383	120625383	+	957.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105901)	promoter-TSS (NR_105901)	-7.0	NR_105901	102465565.0		NR_105901	ENSMUSG00000098282	Mir6936	Gm27574|mmu-mir-6936	microRNA 6936	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45162334-5	chr7	45161890	45162890	+	957.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1531.0	NM_182993	72961.0	Mm.255631	NM_182993	ENSMUSG00000070570	Slc17a7	2900052E22Rik|AI851913|Vglut1	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7	protein-coding	2.0	0.0	0.5	0.0	1.5	1.5
Merged-chr19-41313922-4	chr19	41313420	41314420	+	957.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 8 of 16)	intron (NM_031376, intron 8 of 16)	-49916.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	9.5	12.0	9.0	0.0	19.0	14.5
Merged-chr16-91347587-4	chr16	91347070	91348070	+	957.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25213.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45464399-4	chr9	45463893	45464893	+	957.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-33161.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-164218327-3	chr1	164217797	164218797	+	957.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007976, intron 24 of 24)	intron (NM_007976, intron 24 of 24)	-30749.0	NM_001276455	116914.0	Mm.35444	NM_054087	ENSMUSG00000040918	Slc19a2	AV276020|AW322295|DDA1|THTR1|TRMA|ThTr-1	solute carrier family 19 (thiamine transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-17319963-4	chr19	17319496	17320496	+	957.87915	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	19509.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	65.5	139.5	93.0	40.0	74.5	27.5
Merged-chr3-8632014-4	chr3	8631512	8632512	+	957.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153352, intron 2 of 2)	intron (NR_153352, intron 2 of 2)	3961.0	NR_153352	102635065.0		NR_153352	ENSMUSG00000104102	Gm32496	-	predicted gene, 32496	ncRNA	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr19-47399177-4	chr19	47398676	47399676	+	957.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 2 of 14)	intron (NM_008018, intron 2 of 14)	65235.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	4.5	19.0	13.5	7.0	9.5	17.0
Merged-chr10-117747746-4	chr10	117747239	117748239	+	957.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1381.0	NM_029875	215436.0	Mm.256753	NM_029875	ENSMUSG00000060181	Slc35e3	9330166G04Rik|AI481200	solute carrier family 35, member E3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-58606930-4	chr6	58606433	58607433	+	957.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011920, intron 1 of 15)	intron (NM_011920, intron 1 of 15)	10261.0	NM_011920	26357.0	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118481598-4	chr7	118481076	118482076	+	957.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10399.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	70.0	142.0	119.0	60.0	54.5	65.0
Merged-chr3-107034961-4	chr3	107034441	107035441	+	957.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1221.0	NM_008418	16491.0	Mm.30640	NM_008418	ENSMUSG00000047959	Kcna3	Kca1-3|Kv1.3|Mk-3	potassium voltage-gated channel, shaker-related subfamily, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99149250-4	chr7	99148732	99149732	+	957.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8088.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0.0	0.0	0.0	7.5	0.0	0.0
Merged-chr14-61697136-5	chr14	61696619	61697619	+	957.849976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-14746.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	52.5	124.0	97.0	55.5	134.0	73.5
Merged-chr2-71543140-4	chr2	71542647	71543647	+	957.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010054)	TTS (NM_010054)	3607.0	NM_010054	13392.0	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51307786-3	chr13	51307288	51308288	+	957.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100830.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91852964-4	chr16	91852466	91853466	+	957.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 21 of 28)	L2b|LINE|L2	78664.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81024743-4	chr13	81024245	81025245	+	957.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015587, intron 1 of 1)	IAPEY3-int|LTR|ERVK	60671.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29879880-3	chr11	29879383	29880383	+	957.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 7 of 41)	intron (NM_146016, intron 7 of 41)	-54215.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	4.5	5.0	9.5	5.5	4.0	3.5
Merged-chr11-95520912-4	chr11	95520414	95521414	+	957.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6349.0	NM_130858	104079.0	Mm.22970	NM_130858	ENSMUSG00000046719	Nxph3	-	neurexophilin 3	protein-coding	2.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30671455-8	chr14	30670958	30671958	+	957.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177815, intron 6 of 12)	intron (NM_177815, intron 6 of 12)	17083.0	NM_177815	328370.0	Mm.259657	NM_177815	ENSMUSG00000052395	Rft1	D930025H04	RFT1 homolog	protein-coding	75.0	89.0	75.0	57.5	86.5	85.0
Merged-chr6-53390604-4	chr6	53390116	53391116	+	957.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 4 of 10)	L4_B_Mam|LINE|RTE-X	103313.0	NM_001327821	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	17.5	24.0	11.0	10.0	26.5	24.0
Merged-chr6-57533695-4	chr6	57533109	57534109	+	957.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175523, intron 1 of 6)	intron (NM_175523, intron 1 of 6)	1817.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-136892893-4	chr2	136892382	136893382	+	957.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028834, intron 1 of 7)	intron (NM_028834, intron 1 of 7)	714.0	NM_001355669	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152428757-4	chr3	152428235	152429235	+	957.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001287139, exon 4 of 14)	exon (NM_001287139, exon 4 of 14)	32051.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-47330392-3	chr18	47329895	47330895	+	957.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311097, intron 1 of 17)	intron (NM_001311097, intron 1 of 17)	38473.0	NM_018744	20358.0	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133751726-4	chr4	133751229	133752229	+	957.7625119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080819, intron 1 of 19)	intron (NM_001080819, intron 1 of 19)	1882.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	32.0	53.5	39.0	21.5	51.0	51.0
Merged-chr10-70181592-4	chr10	70181111	70182111	+	957.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111121, intron 6 of 8)	intron (NM_001111121, intron 6 of 8)	-23053.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-46043165-3	chr13	46042698	46043698	+	957.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	UCON26|Unknown|Unknown	-78207.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0.0	0.0	0.5	1.5	0.0	0.0
Merged-chr19-40744835-2	chr19	40744334	40745334	+	957.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85064.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	5.5	2.0	0.0	0.0	0.0	7.5
Merged-chr4-105207120-4	chr4	105206619	105207619	+	957.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 2 of 5)	intron (NM_080555, intron 2 of 5)	49772.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	4.0	10.0	7.5	2.0	7.0	6.0
Merged-chr11-118980548-4	chr11	118980050	118981050	+	957.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-7631.0	NM_001359574	238011.0	Mm.244114	NM_001030291	ENSMUSG00000046697	Enpp7	Alk-SMase|Gm254	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58750208-4	chr15	58749710	58750710	+	957.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73217.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141092446-4	chr7	141091894	141092894	+	957.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023059, exon 7 of 10)	exon (NM_023059, exon 7 of 10)	8152.0	NM_023059	24058.0	Mm.38017	NM_023059	ENSMUSG00000025494	Sigirr	AI256711|TIR8	single immunoglobulin and toll-interleukin 1 receptor (TIR) domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87112043-4	chr1	87111526	87112526	+	957.710693	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10420.0	NM_001081082	76768.0	Mm.58068	NM_001081082	ENSMUSG00000079440	Alpi	2010001C14Rik|Akp6|gIAP	alkaline phosphatase, intestinal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95849798-4	chr4	95849311	95850311	+	957.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113412, intron 14 of 15)	intron (NM_001113412, intron 14 of 15)	117224.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	3.0	6.5	6.0	2.0	5.0	0.5
Merged-chr3-59185799-4	chr3	59185292	59186292	+	957.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302203, intron 1 of 2)	intron (NM_001302203, intron 1 of 2)	9312.0	NM_001302203	84111.0	Mm.60267	NM_032399	ENSMUSG00000051431	Gpr87	-	G protein-coupled receptor 87	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109406545-8	chr4	109406070	109407070	+	957.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153392)	promoter-TSS (NM_153392)	-313.0	NR_131195	102635290.0	Mm.427859	NR_131195		Ttc39aos1	Gm12750|lincRNA-EPS	Ttc39a opposite strand RNA 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105478455-4	chr4	105477972	105478972	+	957.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	321125.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	30.0	72.5	82.5	39.0	75.0	86.0
Merged-chr8-13840320-4	chr8	13839816	13840816	+	957.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2227.0	NM_153093	231201.0	Mm.423959	NM_153093	ENSMUSG00000057116	AF366264	Susp4	cDNA sequence AF366264	protein-coding	3.5	19.5	17.0	10.0	33.5	12.5
Merged-chr12-76016845-4	chr12	76016356	76017356	+	957.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005510, intron 66 of 115)	LTR55|LTR|ERVL?	107753.0	NR_039560	100628610.0		NR_039560	ENSMUSG00000092922	Mir5101	mmu-mir-5101|mu-mir-5101	microRNA 5101	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138965211-3	chr1	138964705	138965705	+	957.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166501, intron 1 of 21)	intron (NM_001166501, intron 1 of 21)	1496.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24533779-4	chr17	24533277	24534277	+	957.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177375)	promoter-TSS (NM_177375)	-30.0	NM_177375	328778.0	Mm.266033	NM_177375	ENSMUSG00000079657	Rab26	A830020M03Rik	RAB26, member RAS oncogene family	protein-coding	0.0	0.5	0.5	8.0	0.0	3.0
Merged-chr12-112631658-4	chr12	112631131	112632131	+	957.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 2 of 12)	intron (NM_007421, intron 2 of 12)	11584.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81125346-4	chr13	81124848	81125848	+	957.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	161274.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141617475-4	chr4	141616994	141617994	+	957.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151462, intron 2 of 5)	intron (NR_151462, intron 2 of 5)	1139.0	NM_145987	213989.0	Mm.34891	NM_145987	ENSMUSG00000043085	Tmem82	-	transmembrane protein 82	protein-coding	9.5	15.0	14.5	0.5	8.5	7.0
Merged-chr8-72268519-4	chr8	72268017	72269017	+	957.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28499.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	41.0	107.5	93.5	117.0	243.0	146.0
Merged-chr11-86819416-4	chr11	86818945	86819945	+	957.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11785.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166190005-3	chr2	166189477	166190477	+	957.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	-34294.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128111329-4	chr8	128110855	128111855	+	957.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	166870.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-82918149-3	chr8	82917649	82918649	+	957.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 1 of 6)	intron (NM_177378, intron 1 of 6)	54793.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	13.0	3.0	14.0	34.0	24.0	39.5
Merged-chr15-77096469-3	chr15	77095965	77096965	+	957.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_108037)	TTS (NR_108037)	12067.0	NR_108037	74303.0	Mm.444304	NR_108037	ENSMUSG00000097267	1700109K24Rik	4933425G21Rik	RIKEN cDNA 1700109K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34325311-3	chr17	34324824	34325824	+	957.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033978)	promoter-TSS (NM_001033978)	-351.0	NM_001033978	381091.0	Mm.139204	NM_001033978	ENSMUSG00000067341	H2-Eb2	A130038H09Rik|H-2Eb2|Ia-5|Ia5|Iebeta2	histocompatibility 2, class II antigen E beta2	protein-coding	4.5	54.5	50.5	22.0	6.0	5.0
Merged-chr9-25504920-4	chr9	25504425	25505425	+	957.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	23328.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53420011-3	chr19	53419509	53420509	+	957.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER58A|DNA|hAT-Charlie	-29375.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38602164-3	chr2	38601665	38602665	+	957.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011187, intron 6 of 7)	intron (NM_011187, intron 6 of 7)	41741.0	NM_011187	19177.0	Mm.389251	NM_011187	ENSMUSG00000026750	Psmb7	AU020723|MC14	proteasome (prosome, macropain) subunit, beta type 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81121251-3	chr7	81120756	81121756	+	957.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004184, intron 4 of 17)	intron (NM_001004184, intron 4 of 17)	6457.0	NM_001004184	434203.0	Mm.389909	NM_001004184	ENSMUSG00000025726	Slc28a1	Cnt1	solute carrier family 28 (sodium-coupled nucleoside transporter), member 1	protein-coding	0.0	0.0	8.5	0.0	0.5	0.0
Merged-chr5-135960956-2	chr5	135960456	135961456	+	957.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001160366, exon 11 of 11)	exon (NM_001160366, exon 11 of 11)	13520.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	2.0	7.0	5.0	0.0	6.0	7.5
Merged-chr7-80143526-4	chr7	80143027	80144027	+	957.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28177.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	23.0	43.0	32.0	19.0	9.0	9.5
Merged-chr19-58107027-4	chr19	58106532	58107532	+	957.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181415, intron 28 of 28)	MIRc|SINE|MIR	55865.0	NR_049196	100885835.0		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	2.0	0.5	2.5	7.0	0.0	4.0
Merged-chr15-38247344-4	chr15	38246842	38247842	+	957.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28139.0	NM_008757	18285.0	Mm.252830	NM_008757	ENSMUSG00000061923	Odf1	-	outer dense fiber of sperm tails 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102887256-4	chr2	102886756	102887756	+	957.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	14409.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43230068-4	chr17	43229552	43230552	+	957.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40295.0	NM_133776	77596.0	Mm.159950	NM_133776	ENSMUSG00000041293	Adgrf1	5031409J19Rik|Gpr110|KPG_009	adhesion G protein-coupled receptor F1	protein-coding	0.0	3.5	1.5	0.0	2.0	3.0
Merged-chr10-81450298-4	chr10	81449810	81450810	+	957.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22821.0	NM_001311127	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32305893-4	chr12	32305391	32306391	+	957.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-72898.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-59907183-4	chr1	59906680	59907680	+	957.6124880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-5826.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	4.0	8.0	13.0	0.0	6.0	8.0
Merged-chr3-87000346-3	chr3	86999887	87000887	+	957.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1047.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13602727-2	chr8	13602197	13603197	+	957.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 4 of 23)	intron (NM_009025, intron 4 of 23)	-40236.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0.0	0.0	6.5	2.0	6.0	3.5
Merged-chr14-52014921-4	chr14	52014444	52015444	+	957.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253695)	promoter-TSS (NM_001253695)	-386.0	NM_001253695	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	2.0	17.5	12.5	5.5	7.0	9.5
Merged-chr18-68131423-4	chr18	68130934	68131934	+	957.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-96512.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	17.5	19.0	4.5	11.5	13.0	5.0
Merged-chr9-123942224-4	chr9	123941753	123942753	+	957.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26439.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34868493-4	chr6	34867999	34868999	+	957.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197986, intron 1 of 1)	intron (NM_197986, intron 1 of 1)	5353.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100487514-3	chr7	100487016	100488016	+	957.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5842.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.0	11.5	7.0	2.5	10.0	10.0
Merged-chr19-42110732-3	chr19	42110226	42111226	+	957.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145501, intron 4 of 8)	L1MC4|LINE|L1	18267.0	NM_027106	69534.0	Mm.30060	NM_027106	ENSMUSG00000018821	Avpi1	2310008N12Rik|AA410041|VIT32|esu|mVIT32	arginine vasopressin-induced 1	protein-coding	31.5	13.0	12.0	8.0	17.0	22.0
Merged-chr6-123260381-3	chr6	123259903	123260903	+	957.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1704.0	NM_001163161	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-110805243-3	chr10	110804738	110805738	+	957.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045979, intron 2 of 2)	intron (NR_045979, intron 2 of 2)	59799.0	NM_178609	52679.0	Mm.11747	NM_178609	ENSMUSG00000020185	E2f7	A630014C11Rik|D10Ertd739e|E2F-7	E2F transcription factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121801370-4	chr11	121800883	121801883	+	957.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-28835.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94405465-3	chr11	94404969	94405969	+	957.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12493.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5800255-7	chr19	5799734	5800734	+	957.5238039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_002847, exon 1 of 1)	non-coding (NR_002847, exon 1 of 1)	2438.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	36.5	40.5	35.5	27.0	42.5	38.5
Merged-chr9-45267196-5	chr9	45266763	45267763	+	957.511108	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106054)	promoter-TSS (NR_106054)	-556.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91974016-2	chr2	91973516	91974516	+	957.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10453.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0.0	0.0	5.0	2.0	13.0	5.0
Merged-chr4-29322757-2	chr4	29322257	29323257	+	957.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	254678.0	NR_151693	102634169.0		NR_151693		Gm11917	-	predicted gene 11917	ncRNA	0.0	3.0	0.0	0.0	0.0	0.0
Merged-chr6-65153705-2	chr6	65153205	65154205	+	957.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-8975.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63134604-2	chr14	63134104	63135104	+	957.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 3 of 9)	L2|LINE|L2	12142.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	7.5	0.5	3.0	4.5	20.0	7.5
Merged-chr8-85072139-4	chr8	85071672	85072672	+	957.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039514, intron 1 of 8)	intron (NM_001039514, intron 1 of 8)	415.0	NM_001039514	330817.0	Mm.193086	NM_201408	ENSMUSG00000060038	Dhps	Dhs	deoxyhypusine synthase	protein-coding	122.0	281.0	232.0	124.0	341.5	266.5
Merged-chr4-134092643-4	chr4	134092130	134093130	+	957.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001162970)	TTS (NM_001162970)	2443.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	8.0	19.0	12.0	3.0	1.5	2.0
Merged-chr10-60281216-2	chr10	60280716	60281716	+	957.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011179, intron 1 of 14)	ID4_|SINE|ID	-3245.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127535576-2	chr10	127535079	127536079	+	957.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-1020.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	9.0	3.0	4.0	7.0	0.0	5.0
Merged-chr13-23742461-2	chr13	23741961	23742961	+	957.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	A-rich|Low_complexity|Low_complexity	3060.0	NM_175653	319148.0	Mm.262517	NM_175653	ENSMUSG00000069310	Hist1h3c	H3-143	histone cluster 1, H3c	protein-coding	0.0	21.0	6.5	5.0	6.5	4.5
Merged-chr3-96246697-3	chr3	96246206	96247206	+	957.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178216).2	promoter-TSS (NM_178216).2	6.0	NM_054045	97114.0	Mm.358797	NM_054045	ENSMUSG00000081058	Hist2h3c2	H3-614|H3.2-614|Hist2h3c2-ps|Hist2h3ca1|M32461	histone cluster 2, H3c2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21547211-4	chr5	21546726	21547726	+	957.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199632, intron 11 of 20)	intron (NM_001199632, intron 11 of 20)	3699.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-38594308-4	chr12	38593816	38594816	+	957.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045943, intron 1 of 8)	intron (NR_045943, intron 1 of 8)	20205.0	NR_045943	73867.0	Mm.78933	NR_045943	ENSMUSG00000112967	4930428E07Rik	-	RIKEN cDNA 4930428E07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107597176-2	chr9	107596676	107597676	+	957.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_111986)	TTS (NR_111986)	8226.0	NM_009153	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	12.5	32.0	29.0	20.0	22.0	5.5
Merged-chr1-88264445-2	chr1	88263945	88264945	+	957.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172505)	TTS (NM_172505)	4963.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133419724-2	chr4	133419228	133420228	+	957.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016981, intron 6 of 11)	intron (NM_016981, intron 6 of 11)	49952.0	NR_039582	100628620.0		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	0.0	1.5	3.5	0.0	0.0	3.0
Merged-chr1-134063725-8	chr1	134063212	134064212	+	957.4874880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15443.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-150840815-4	chr5	150840309	150841309	+	957.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111798.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-113654238-3	chr2	113653746	113654746	+	957.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 13 of 16)	intron (NM_001285459, intron 13 of 16)	-30844.0	NM_001287818	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	3.0	13.5	6.5	2.0	6.5	4.0
Merged-chr8-64946626-4	chr8	64946113	64947113	+	957.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028427)	promoter-TSS (NM_028427)	-572.0	NM_001163747	73067.0	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-63709296-4	chr18	63708786	63709786	+	957.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014981, intron 1 of 27)	intron (NM_001014981, intron 1 of 27)	591.0	NM_001014981	104082.0	Mm.30850	NM_001014981	ENSMUSG00000040560	Wdr7	AI462727|TRAG|mKIAA0541	WD repeat domain 7	protein-coding	20.0	27.0	32.5	20.5	26.0	32.5
Merged-chr1-74715717-4	chr1	74715220	74716220	+	957.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024264, intron 1 of 8)	intron (NM_024264, intron 1 of 8)	2185.0	NM_024264	104086.0	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103255381-4	chr15	103254857	103255857	+	957.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008685)	promoter-TSS (NM_008685)	82.0	NM_008685	18022.0	Mm.457989	NM_008685	ENSMUSG00000058794	Nfe2	NF-E2|NF-E2/P45|p45|p45NFE2|p45nf-e2	nuclear factor, erythroid derived 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111074134-4	chr9	111073624	111074624	+	957.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-16606.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3414482-4	chr19	3413975	3414975	+	957.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001329667)	promoter-TSS (NM_001329667)	69.0	NM_001329667	14419.0	Mm.4655	NM_010253	ENSMUSG00000024907	Gal	Galn	galanin	protein-coding	3.5	2.0	6.0	5.5	1.0	24.5
Merged-chr5-66041495-4	chr5	66041001	66042001	+	957.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 3 of 6)	Lx9|LINE|L1	-37216.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69235367-4	chr11	69234867	69235867	+	957.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008192, intron 3 of 18)	C-rich|Low_complexity|Low_complexity	1655.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73531740-4	chr7	73531221	73532221	+	957.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	B4A|SINE|B4	10025.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60710902-3	chr18	60710418	60711418	+	957.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348100, intron 2 of 14)	intron (NM_001348100, intron 2 of 14)	16648.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0.0	0.0	1.0	1.5	0.0	0.0
Merged-chr12-10755239-3	chr12	10754724	10755724	+	957.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	-292589.0	NR_045860	71457.0	Mm.95280	NR_045860	ENSMUSG00000113620	7420701I03Rik	-	RIKEN cDNA 7420701I03 gene	ncRNA	5.5	0.5	3.5	0.0	0.0	0.5
Merged-chr11-107595035-3	chr11	107594548	107595548	+	957.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198298, intron 5 of 31)	intron (NM_198298, intron 5 of 31)	-42674.0	NR_105897	102465562.0		NR_105897	ENSMUSG00000098497	Mir6932	Gm27691|mmu-mir-6932	microRNA 6932	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43709851-4	chr19	43709338	43710338	+	957.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053103, intron 5 of 12)	intron (NM_053103, intron 5 of 12)	20149.0	NM_053103	93685.0	Mm.248237	NM_053103	ENSMUSG00000025192	Entpd7	1810012B13Rik|1810020C02Rik|2810003F23Rik|LALP1|Lysal2	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding	19.5	35.0	45.0	1.0	3.5	13.5
Merged-chr3-133585109-4	chr3	133584632	133585632	+	957.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-40742.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23985205-4	chr17	23984702	23985702	+	957.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-9972.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	13.5	4.0	6.0	0.0	0.0	5.5
Merged-chr17-57359869-4	chr17	57359327	57360327	+	957.427734	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 1 of 22)	intron (NM_001355722, intron 1 of 22)	1141.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88719171-4	chr3	88718658	88719658	+	957.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028056, intron 3 of 5)	intron (NR_028056, intron 3 of 5)	2304.0	NR_028056	19769.0	Mm.4009	NM_009069	ENSMUSG00000028057	Rit1	RIBB|ROC1|Rit	Ras-like without CAAX 1	protein-coding	9.5	41.5	29.5	13.0	28.5	31.0
Merged-chr4-32983475-4	chr4	32983016	32984016	+	957.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027491, exon 1 of 7)	exon (NM_027491, exon 1 of 7)	518.0	NM_027491	52187.0	Mm.300814	NM_027491	ENSMUSG00000028278	Rragd	5730543C08Rik|AI467523|C030003H22Rik|D4Ertd174e	Ras-related GTP binding D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70213235-4	chr14	70212729	70213729	+	957.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5558.0	NM_011366	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-51785101-4	chr17	51784590	51785590	+	957.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357637, intron 6 of 10)	intron (NM_001357637, intron 6 of 10)	26964.0	NM_001163630	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.0	0.0	3.0	2.0	11.5	7.5
Merged-chr7-73596609-4	chr7	73596089	73597089	+	957.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-38194.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	7.5	38.5	23.0	12.0	40.5	20.0
Merged-chr7-7300707-4	chr7	7300211	7301211	+	957.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_126157, exon 1 of 3)	non-coding (NR_126157, exon 1 of 3)	140.0	NR_126157	12727.0	Mm.297883	NM_011334	ENSMUSG00000000605	Clcn4	Clc4-2|Clcn4-2|clC-4	chloride channel, voltage-sensitive 4	protein-coding	3.5	7.5	5.5	0.0	5.0	4.0
Merged-chr7-139249076-4	chr7	139248605	139249605	+	957.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098636, intron 1 of 2)	intron (NM_001098636, intron 1 of 2)	623.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	5.5	31.0	34.0	10.0	35.5	23.0
Merged-chr8-35792137-5	chr8	35791627	35792627	+	957.392395	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	34432.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	46.5	77.0	54.0	14.5	29.5	29.5
Merged-chr18-13301309-3	chr18	13300796	13301796	+	957.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	294306.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	2.0	1.5	1.5	0.0	0.0	0.5
Merged-chr9-40329242-3	chr9	40328780	40329780	+	957.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151734, intron 2 of 18)	intron (NR_151734, intron 2 of 18)	-4192.0	NR_040728	73558.0	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-149241186-4	chr5	149240733	149241733	+	957.3875119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23771.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-139065425-4	chr1	139064923	139065923	+	957.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166501, intron 9 of 21)	intron (NM_001166501, intron 9 of 21)	87766.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56673151-4	chr19	56672627	56673627	+	957.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie5|DNA|hAT-Charlie	-49245.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-79993663-7	chr18	79993205	79994205	+	957.369019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53190.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	55.5	134.0	111.5	54.0	158.0	161.5
Merged-chr15-100153247-4	chr15	100152783	100153783	+	957.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 5 of 37)	intron (NM_001159361, intron 5 of 37)	-1113.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-62685451-4	chr2	62684946	62685946	+	957.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145523, intron 3 of 7)	intron (NM_145523, intron 3 of 7)	21119.0	NM_145523	227960.0	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-141018016-2	chr5	141017516	141018516	+	957.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17420.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135461297-2	chr1	135460797	135461797	+	957.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_173437, intron 13 of 28)	intron (NM_173437, intron 13 of 28)	-6614.0	NR_049188	100885827.0		NR_049188	ENSMUSG00000093515	Mir1231	Gm23720|mir-1231|mmu-mir-1231	microRNA 1231	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97351333-3	chr15	97350831	97351831	+	957.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 3 of 5)	intron (NM_172293, intron 3 of 5)	-104044.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83016209-3	chr15	83015708	83016708	+	957.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028728, intron 2 of 5)	intron (NM_028728, intron 2 of 5)	6930.0	NM_028728	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	18.5	29.5	10.0	1.5	2.5	1.5
Merged-chr2-35289191-3	chr2	35288673	35289673	+	957.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206368, intron 3 of 16)	intron (NM_001206368, intron 3 of 16)	6793.0	NM_146120	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13156049-3	chr8	13155548	13156548	+	957.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3113.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30718461-4	chr2	30717950	30718950	+	957.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2760.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51926406-4	chr11	51925896	51926896	+	957.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41235.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96612104-3	chr9	96611603	96612603	+	957.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053268, intron 1 of 23)	L2|LINE|L2	19400.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-125667300-3	chr2	125666797	125667797	+	957.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199022, intron 5 of 11)	intron (NM_199022, intron 5 of 11)	-5803.0	NM_025613	58521.0	Mm.425101	NM_025613	ENSMUSG00000091337	Eid1	2610002K20Rik|Cri1|EID-1|ORF12|PNAS-22|PTD014	EP300 interacting inhibitor of differentiation 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37435482-4	chr19	37434986	37435986	+	957.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008245, intron 1 of 3)	CpG	645.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	0.0	1.0	1.5	0.0	1.0	2.0
Merged-chr11-100761838-4	chr11	100761328	100762328	+	957.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010410, exon 2 of 2)	exon (NM_010410, exon 2 of 2)	1103.0	NM_010410	15171.0	Mm.10096	NM_010410	ENSMUSG00000045471	Hcrt	PPOX	hypocretin	protein-coding	3.5	7.5	3.0	0.0	2.5	0.5
Merged-chr4-148168532-4	chr4	148168021	148169021	+	957.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7853.0	NM_176848	230904.0	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	4.5	7.5	4.0	2.0	5.0	2.5
Merged-chr15-90623705-4	chr15	90623204	90624204	+	957.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357979, intron 3 of 18)	intron (NM_001357979, intron 3 of 18)	55684.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	4.5	0.0	4.5	6.0	4.0	0.0
Merged-chr15-96564036-4	chr15	96563539	96564539	+	957.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	77923.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24380147-3	chr7	24379697	24380697	+	957.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163510, intron 4 of 8)	intron (NM_001163510, intron 4 of 8)	9934.0	NM_008433	16534.0	Mm.9911	NM_008433	ENSMUSG00000054342	Kcnn4	IK1|IKCA1|KCA4|KCa3.1|SK4|SKCas|mIKCa1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	protein-coding	2.0	14.0	5.0	2.5	1.0	3.0
Merged-chr11-73084523-3	chr11	73084020	73085020	+	957.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025818)	TTS (NM_025818)	-6063.0	NM_001361245	16407.0	Mm.96	NM_008399	ENSMUSG00000005947	Itgae	A530055J10|CD103|aM290|alpha-E1|alpha-M290	integrin alpha E, epithelial-associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65538367-4	chr9	65537887	65538887	+	957.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41700.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80777256-5	chr7	80776810	80777810	+	957.2666630000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	26021.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	27.0	86.0	38.5	23.5	25.5	42.0
Merged-chr16-4316225-4	chr16	4315694	4316694	+	957.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009624, intron 3 of 10)	intron (NM_009624, intron 3 of 10)	86965.0	NR_003628	436332.0	Mm.478141	NM_001013830	ENSMUSG00000089645	Gm5766	EG436332	ribosomal protein L7a pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43818894-4	chr5	43818430	43819430	+	957.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009763)	promoter-TSS (NM_009763)	37.0	NM_009763	12182.0	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	22.0	0.0	2.0	2.5	1.0	11.5
Merged-chr13-67728789-4	chr13	67728268	67729268	+	957.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027969)	promoter-TSS (NR_027969)	405.0	NM_145622	235907.0	Mm.440123	NM_145622	ENSMUSG00000071281	Zfp65	KRAB5|Zfp71-rs1|pz114	zinc finger protein 65	protein-coding	0.5	8.5	1.5	0.0	0.0	0.0
Merged-chr9-123953779-4	chr9	123953299	123954299	+	957.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	14893.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-108178589-4	chr10	108178095	108179095	+	957.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027892, intron 1 of 25)	RSINE1|SINE|B4	16195.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80598197-4	chr10	80597712	80598712	+	957.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-4668.0	NM_001100606	100113398.0	Mm.273170	NM_001100606	ENSMUSG00000113640	Adat3	A430024H01Rik	adenosine deaminase, tRNA-specific 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113645799-4	chr5	113645257	113646257	+	957.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	-2154.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113695929-4	chr6	113695431	113696431	+	957.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172161)	TTS (NM_172161)	-1119.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124922703-4	chr8	124922190	124923190	+	957.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053207, intron 1 of 4)	URR1A|DNA|hAT-Charlie	24804.0	NM_001111141	244666.0	Mm.482915	NM_001111141	ENSMUSG00000031986	Sprtn	Gm505	SprT-like N-terminal domain	protein-coding	25.0	97.0	25.5	45.5	145.5	86.0
Merged-chr12-31917517-4	chr12	31917028	31918028	+	957.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163126, intron 19 of 22)	intron (NM_001163126, intron 19 of 22)	32717.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	2.5	5.5	8.5	4.5	9.0	1.0
Merged-chr3-148248830-4	chr3	148248344	148249344	+	957.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	705791.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-69526470-5	chr13	69525922	69526922	+	957.23999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198600, intron 1 of 12)	intron (NM_198600, intron 1 of 12)	7442.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	10.5	33.0	48.0	44.0	128.0	74.5
Merged-chr5-125484213-7	chr5	125483670	125484670	+	957.228577	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030210, intron 2 of 17)	B2_Mm1a|SINE|B2	8297.0	NM_030210	78894.0	Mm.431573	NM_030210	ENSMUSG00000029482	Aacs	2210408B16Rik|SUR5	acetoacetyl-CoA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126596091-3	chr7	126595566	126596566	+	957.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1156.0	NM_145636	246779.0	Mm.222632	NM_145636	ENSMUSG00000044701	Il27	IL-27|IL-27p28|Il30|p28	interleukin 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140722377-3	chr5	140721878	140722878	+	957.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1749.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-82246613-4	chr12	82246090	82247090	+	957.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 2 of 23)	L1M4c|LINE|L1	-64759.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88584637-4	chr10	88584117	88585117	+	957.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175418, intron 2 of 28)	intron (NM_175418, intron 2 of 28)	20535.0	NM_001252372	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28807058-4	chr7	28806544	28807544	+	957.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3846.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-51879362-3	chr7	51878849	51879849	+	957.1904910000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008087, exon 1 of 8)	5' UTR (NM_008087, exon 1 of 8)	382.0	NM_001330607	14453.0	Mm.207360	NM_008087	ENSMUSG00000030498	Gas2	Gas-2	growth arrest specific 2	protein-coding	1.5	3.0	4.0	1.0	1.0	0.5
Merged-chr2-84426640-4	chr2	84426052	84427052	+	957.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1286.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	15.5	25.0	12.0	15.5	25.5	12.0
Merged-chr3-32398608-4	chr3	32398103	32399103	+	957.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32938.0	NM_009517	22401.0	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125408145-4	chr5	125407651	125408651	+	957.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18134.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	11.0	2.0	0.5	16.0	2.0	0.5
Merged-chr1-85090754-1	chr1	85090254	85091254	+	957.1666869999999	f1_balb.idr	intron (NM_213615, intron 5 of 6)	Lx2B2|LINE|L1	19099.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83037892-4	chr15	83037403	83038403	+	957.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger16a|DNA|TcMar-Tigger	-4506.0	NM_001271411	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-23763018-4	chr1	23762500	23763500	+	957.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172124, exon 1 of 4)	exon (NM_172124, exon 1 of 4)	1074.0	NM_172124	280645.0	Mm.471661	NM_172124	ENSMUSG00000026156	B3gat2	GlcAT-S|Glcats	beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-5311514-2	chr9	5311014	5312014	+	957.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007609, intron 1 of 8)	RLTR17|LTR|ERVK	2665.0	NM_007609	12363.0	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119905245-2	chr11	119904745	119905745	+	957.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 2)	intron (NR_039557, intron 2 of 2)	-8565.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84788490-4	chr2	84787975	84788975	+	957.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10353.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40310396-4	chr10	40309890	40310890	+	957.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-8202.0	NM_009665	11702.0	Mm.253533	NM_009665	ENSMUSG00000075232	Amd1	AdoMetDC|Amd-1|SAMDC|SAMDC 1|adoMetDC1	S-adenosylmethionine decarboxylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-26439507-4	chr12	26438958	26439958	+	957.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16994.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	3.0	4.5	16.0	142.5	282.5	180.0
Merged-chr7-17063111-4	chr7	17062597	17063597	+	957.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162950)	promoter-TSS (NM_001162950)	-670.0	NM_001162950	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr19-41932751-4	chr19	41932246	41933246	+	957.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023740)	promoter-TSS (NM_023740)	568.0	NM_001164561	66583.0	Mm.289086	NM_025644	ENSMUSG00000034321	Exosc1	2610035C18Rik|2610104C07Rik|2610312F07Rik|AI447561	exosome component 1	protein-coding	14.0	34.5	31.5	15.5	32.0	10.5
Merged-chr13-56145654-2	chr13	56145154	56146154	+	957.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10104.0	NM_001159513	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr5-88399982-4	chr5	88399500	88400500	+	957.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23892.0	NM_027793	71421.0	Mm.79700	NM_027793	ENSMUSG00000029282	Amtn	5430427O21Rik	amelotin	protein-coding	1.0	0.0	0.5	0.0	2.0	0.0
Merged-chr13-9330853-3	chr13	9330343	9331343	+	957.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	54318.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50697300-3	chr15	50696835	50697835	+	957.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	191714.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	12.0	14.0	7.5	34.0	30.5	17.0
Merged-chr5-113703549-3	chr5	113703049	113704049	+	957.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033216, intron 2 of 2)	intron (NR_033216, intron 2 of 2)	21223.0	NR_033216	381707.0	Mm.159016	NR_033216	ENSMUSG00000042184	1700069L16Rik	1700096P12Rik	RIKEN cDNA 1700069L16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4617007-4	chr2	4616523	4617523	+	957.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35112.0	NM_026045	67229.0	Mm.38529	NM_026045	ENSMUSG00000039449	Prpf18	2810441A10Rik	pre-mRNA processing factor 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27688321-4	chr15	27687864	27688864	+	957.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6822.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84460120-4	chr2	84459612	84460612	+	957.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355271, intron 2 of 8)	intron (NM_001355271, intron 2 of 8)	14062.0	NM_011576	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-58362768-4	chr3	58362285	58363285	+	957.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-51935.0	NM_001081229	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19843766-4	chr7	19843267	19844267	+	957.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8236.0	NM_001270489	100502736.0	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-45882363-3	chr1	45881845	45882845	+	957.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43249.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35709797-3	chr8	35709302	35710302	+	957.0833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116757.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	12.0	20.5	9.5	4.5	9.0	9.0
Merged-chr13-93755318-4	chr13	93754819	93755819	+	957.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MRLTR33|LTR|ERVK	-16360.0	NM_009712	11881.0	Mm.300178	NM_009712	ENSMUSG00000042082	Arsb	1110007C02Rik|AI480648|As-1|As-1r|As-1s|As-1t|As1|As1-r|As1-s|As1-t|Asr-1|Ast-1	arylsulfatase B	protein-coding	2.5	0.0	1.0	0.0	5.0	0.5
Merged-chr11-113339908-3	chr11	113339401	113340401	+	957.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027216, intron 6 of 9)	intron (NM_027216, intron 6 of 9)	-130232.0	NR_040276	319871.0	Mm.383743	NR_040276	ENSMUSG00000085421	4732490B19Rik	-	RIKEN cDNA 4732490B19 gene	ncRNA	0.0	1.0	0.0	0.0	1.5	0.0
Merged-chr13-112003315-4	chr13	112002778	112003778	+	957.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	135342.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	8.0	4.0	13.0	4.5	2.5	11.5
Merged-chr9-124146509-4	chr9	124146003	124147003	+	957.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	24960.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71744983-4	chr2	71744478	71745478	+	957.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	25561.0	NR_037979	381371.0	Mm.330284	NM_201366	ENSMUSG00000064263	Platr26	Gm1631	pluripotency associated transcript 26	ncRNA	7.0	1.5	7.5	14.5	3.0	6.0
Merged-chr4-127235995-4	chr4	127235532	127236532	+	957.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198618, intron 11 of 11)	CpG	-7752.0	NM_030252	80284.0	Mm.139607	NM_030252	ENSMUSG00000042380	Smim12	BC003266	small integral membrane protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6476986-10	chr17	6476480	6477480	+	957.01001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-25986.0	NR_033520	547127.0	Mm.297552	NM_001045538		Tmem181b-ps	Tmem181b	transmembrane protein 181B, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-52063538-2	chr11	52063038	52064038	+	957.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166654, intron 13 of 13)	intron (NM_001166654, intron 13 of 13)	-35286.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-68437245-2	chr2	68436745	68437745	+	957.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 1 of 17)	intron (NM_016866, intron 1 of 17)	34736.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88551433-2	chr4	88550933	88551933	+	957.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	6812.0	NM_206870	242517.0	Mm.377261	NM_206870	ENSMUSG00000096011	Ifna15	Gm12597|Ifnaa|MuIFN-alpha-A	interferon alpha 15	protein-coding	0.5	0.5	1.5	0.5	0.5	1.5
Merged-chr15-80707210-4	chr15	80706714	80707714	+	957.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4099.0	NM_144812	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88117209-3	chr7	88116723	88117723	+	957.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001143834, intron 10 of 10)	intron (NM_001143834, intron 10 of 10)	-160862.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103655828-4	chr2	103655310	103656310	+	957.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	89500.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	0.0	8.0	3.5	6.0	9.0	6.5
Merged-chr9-57644598-4	chr9	57644129	57645129	+	957.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 2 of 14)	intron (NM_001304761, intron 2 of 14)	1024.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88551702-1	chr3	88551202	88552202	+	957.0	f1_c57bl6.idr	TTS (NM_001362368)	TTS (NM_001362368)	1249.0	NR_155543	83409.0	Mm.41680	NM_031248	ENSMUSG00000028062	Lamtor2	2010111E04Rik|AL022628|Mapbpip|P14|Rab25|Robld3	late endosomal/lysosomal adaptor, MAPK and MTOR activator 2	protein-coding	15.5	7.0	4.0	6.0	14.0	4.5
Merged-chr12-75729004-2	chr12	75728504	75729504	+	957.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030750, intron 1 of 2)	B3A|SINE|B2	6725.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24536504-1	chr17	24536004	24537004	+	957.0	f1_c57bl6.idr	Intergenic	Intergenic	-2757.0	NM_177375	328778.0	Mm.266033	NM_177375	ENSMUSG00000079657	Rab26	A830020M03Rik	RAB26, member RAS oncogene family	protein-coding	2.5	2.0	1.0	0.0	0.5	8.0
Merged-chr2-35984945-2	chr2	35984445	35985445	+	957.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-5321.0	NM_029774	74410.0	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84021840-2	chr12	84021340	84022340	+	957.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR2a|LTR|ERVK	12338.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-121109535-2	chr7	121109035	121110035	+	957.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139310, intron 9 of 28)	(CAAAA)n|Simple_repeat|Simple_repeat	26097.0	NM_139310	246190.0	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102451099-4	chr15	102450595	102451595	+	957.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356575, intron 7 of 11)	intron (NM_001356575, intron 7 of 11)	5728.0	NM_144547	110542.0	Mm.60331	NM_144547	ENSMUSG00000023047	Amhr2	Misiir|Misrii|Mrii	anti-Mullerian hormone type 2 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6709837-2	chr15	6709337	6710337	+	957.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030168, intron 2 of 37)	intron (NM_030168, intron 2 of 37)	1456.0	NM_030168	78757.0	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-88832638-2	chr18	88832138	88833138	+	957.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61569.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-10848292-4	chr8	10847807	10848807	+	957.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34147.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123283795-4	chr4	123283170	123284170	+	957.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001356377, exon 1 of 14)	exon (NM_001356377, exon 1 of 14)	759.0	NM_130881	230721.0	Mm.277091	NM_130881	ENSMUSG00000011257	Pabpc4	-	poly(A) binding protein, cytoplasmic 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-55854788-2	chr7	55854288	55855288	+	957.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164661, intron 2 of 31)	intron (NM_001164661, intron 2 of 31)	12717.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	11.0	1.5	1.5	1.5	5.0	5.5
Merged-chr6-122605653-2	chr6	122605153	122606153	+	957.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008108, exon 2 of 2)	3' UTR (NM_008108, exon 2 of 2)	-3209.0	NM_001134391	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr4-124700593-4	chr4	124700097	124701097	+	957.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010213)	promoter-TSS (NM_010213)	-102.0	NM_010213	14201.0	Mm.331856	NM_010213	ENSMUSG00000032643	Fhl3	SLIM2	four and a half LIM domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-163975285-4	chr1	163974788	163975788	+	957.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357049, intron 10 of 24)	intron (NM_001357049, intron 10 of 24)	19508.0	NM_001357049	381306.0	Mm.28152	NM_201364	ENSMUSG00000041406	BC055324	-	cDNA sequence BC055324	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102073212-2	chr15	102072712	102073712	+	957.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145625)	promoter-TSS (NM_145625)	-561.0	NM_145625	75705.0	Mm.290022	NM_145625	ENSMUSG00000058655	Eif4b	2310046H11Rik|AL024095|C85189|Eif4a2	eukaryotic translation initiation factor 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138686070-4	chr5	138685568	138686568	+	956.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63209.0	NM_183025	243308.0	Mm.36612	NM_183025	ENSMUSG00000056014	A430033K04Rik	C86988	RIKEN cDNA A430033K04 gene	protein-coding	3.0	1.0	7.0	0.0	7.0	5.5
Merged-chr8-123855264-4	chr8	123854755	123855755	+	956.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028536, intron 2 of 3)	HAL1|LINE|L1	4954.0	NM_028536	73420.0	Mm.157746	NM_028536	ENSMUSG00000031971	Ccsap	1700054N08Rik|AI853424	centriole, cilia and spindle associated protein	protein-coding	10.0	13.5	16.0	9.5	40.0	25.0
Merged-chr8-122463961-4	chr8	122463396	122464396	+	956.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3204.0	NM_013914	30927.0	Mm.103673	NM_013914	ENSMUSG00000006587	Snai3	AI643946|Smuc|Zfp293	snail family zinc finger 3	protein-coding	0.0	1.5	7.0	12.5	2.5	1.5
Merged-chr15-77931829-4	chr15	77931331	77932331	+	956.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2837.0	NM_019913	56551.0	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-115236442-4	chr9	115235965	115236965	+	956.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45605.0	NR_029430	111186.0	Mm.484753	NR_029430		Stmn1-rs1	Lag-rs1|Lap18-rs1	stathmin 1, related sequence 1	pseudo	13.5	13.5	11.0	0.0	1.5	10.0
Merged-chr14-67899010-4	chr14	67898518	67899518	+	956.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177780, intron 1 of 51)	intron (NM_177780, intron 1 of 51)	34554.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	4.5	13.5	3.5	9.5	0.0	8.0
Merged-chr2-120446603-3	chr2	120446100	120447100	+	956.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172672, intron 17 of 23)	intron (NM_172672, intron 17 of 23)	-16993.0	NM_001177799	12335.0	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	11.0	9.5	9.0	1.0	2.5	11.5
Merged-chr8-85500680-4	chr8	85500192	85501192	+	956.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173866, intron 2 of 11)	intron (NM_173866, intron 2 of 11)	8075.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-53937329-3	chr5	53936812	53937812	+	956.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H2|LTR|ERVL-MaLR	-61211.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120098582-4	chr7	120098077	120099077	+	956.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3849.0	NM_145586	233806.0	Mm.257952	NM_145586	ENSMUSG00000030917	Tmem159	8430420C20Rik	transmembrane protein 159	protein-coding	0.5	2.5	0.0	0.0	2.5	0.0
Merged-chr16-30465017-4	chr16	30464544	30465544	+	956.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-76514.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	10.0	33.5	21.5	2.0	29.5	15.5
Merged-chr4-43384257-3	chr4	43383757	43384757	+	956.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037709, intron 1 of 11)	intron (NM_001037709, intron 1 of 11)	2275.0	NM_001037709	100213.0	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	101.0	178.5	195.5	4.0	16.5	23.5
Merged-chr4-108790688-4	chr4	108790187	108791187	+	956.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9599.0	NM_001347163	230597.0	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	5.0	9.5	3.5	2.5	11.0	2.5
Merged-chr5-34695716-4	chr5	34695214	34696214	+	956.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019497, intron 5 of 15)	intron (NM_019497, intron 5 of 15)	35335.0	NM_019497	14772.0	Mm.117076	NM_019497	ENSMUSG00000052783	Grk4	A830025H08Rik|GRK|Gprk2l|Gprk4	G protein-coupled receptor kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-52319283-4	chr12	52318826	52319826	+	956.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	161283.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	32.5	32.0	29.5	25.0	59.5	68.5
Merged-chr7-4753060-4	chr7	4752560	4753560	+	956.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183406)	promoter-TSS (NM_183406)	34.0	NR_110411	333182.0	Mm.29625	NM_183405	ENSMUSG00000051811	Cox6b2	1700067P11Rik|BC048670|COXVIB2	cytochrome c oxidase subunit VIb polypeptide 2	protein-coding	0.0	0.0	4.0	0.0	0.0	2.0
Merged-chr19-47900732-4	chr19	47900267	47901267	+	956.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001738, intron 1 of 1)	intron (NM_001001738, intron 1 of 1)	18532.0	NM_001001738	414801.0	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	9.5	21.0	3.0	0.0	3.5	8.5
Merged-chr3-79491842-4	chr3	79491347	79492347	+	956.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 10 of 16)	intron (NM_001162999, intron 10 of 16)	75832.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59164180-4	chr4	59163675	59164675	+	956.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25375.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	0.0	1.0	1.0	0.0	0.0	1.5
Merged-chr1-100180244-2	chr1	100179747	100180747	+	956.833374	f0_balb.idr|f0_c57.idr	intron (NM_172851, intron 10 of 23)	L1Md_F2|LINE|L1	407482.0	NM_172851	241175.0	Mm.251301	NM_172851	ENSMUSG00000067028	Cntnap5b	C230078M14Rik|Caspr5-2	contactin associated protein-like 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76897987-4	chr11	76897475	76898475	+	956.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6570.0	NM_025655	66601.0	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59001404-3	chr13	59000899	59001899	+	956.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	193702.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	17.0	21.5	15.5	10.5	17.5	16.0
Merged-chr17-46751168-2	chr17	46750668	46751668	+	956.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_028065, intron 1 of 5)	intron (NM_028065, intron 1 of 5)	1046.0	NM_001305989	72029.0	Mm.240325	NM_028065	ENSMUSG00000023973	Cnpy3	1600025D17Rik|2410050O22Rik|AI413153|CAG4A|ERDA5|PRAT4A|Tnrc5	canopy FGF signaling regulator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63678311-3	chr9	63677808	63678808	+	956.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	75662.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39010233-3	chr18	39009746	39010746	+	956.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 1 of 21)	intron (NM_001361073, intron 1 of 21)	17101.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95832818-4	chr8	95832309	95833309	+	956.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20682.0	NM_172758	234595.0	Mm.29267	NM_172758	ENSMUSG00000036534	Slc38a7	D430050E18	solute carrier family 38, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-72467198-4	chr11	72466720	72467720	+	956.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153060, intron 2 of 12)	MIRc|SINE|MIR	7807.0	NM_001276383	216892.0	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138341904-4	chr5	138341404	138342404	+	956.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61395.0	NM_016964	50878.0	Mm.285609	NM_016964	ENSMUSG00000036928	Stag3	SA-2	stromal antigen 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5785211-8	chr17	5784700	5785700	+	956.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13457.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-64966800-3	chr12	64966326	64967326	+	956.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177805, exon 1 of 20)	exon (NM_177805, exon 1 of 20)	1084.0	NM_177805	328108.0	Mm.138465	NM_177805	ENSMUSG00000035614	Togaram1	A430041B07Rik|BC062107|C130034K06|Fam179b|mKIAA0423	TOG array regulator of axonemal microtubules 1	protein-coding	26.5	21.5	12.5	26.0	45.5	29.5
Merged-chr10-67704813-3	chr10	67704308	67705308	+	956.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132849.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79983602-6	chr10	79982771	79983771	+	956.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359632, intron 1 of 9)	intron (NM_001359632, intron 1 of 9)	989.0	NM_001359632	216157.0	Mm.29442	NM_001003949	ENSMUSG00000013858	Tmem259	AC087114.7gm2|ORF61|R32184_3|mFLJ00277	transmembrane protein 259	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29620443-2	chr6	29619943	29620943	+	956.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10594.0	NM_001347079	320938.0	Mm.276381	NM_177296	ENSMUSG00000012535	Tnpo3	5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133	transportin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-74913758-4	chr14	74913288	74914288	+	956.828552	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	34089.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81214147-4	chr7	81213608	81214608	+	956.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 1 of 21)	CpG	304.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74955371-9	chr15	74954931	74955931	+	956.8037109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001164036, exon 1 of 4)	5' UTR (NM_001164036, exon 1 of 4)	325.0	NM_001164040	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	22.0	53.5	76.0	14.0	101.5	58.5
Merged-chr3-126436351-4	chr3	126435859	126436859	+	956.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173451, intron 1 of 1)	intron (NM_173451, intron 1 of 1)	72507.0	NM_173451	271970.0	Mm.317021	NM_173451	ENSMUSG00000046561	Arsj	9330196J05Rik|D830047F08	arylsulfatase J	protein-coding	2.0	14.5	23.0	12.0	17.0	17.5
Merged-chr7-126554201-4	chr7	126553708	126554708	+	956.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146200, intron 15 of 20)	RSINE1|SINE|B4	12158.0	NM_146200	56347.0	Mm.22776	NM_146200	ENSMUSG00000030738	Eif3c	110kDa|3230401O13Rik|Eif3s8|NIPIL(A3)|NipilA3|Xs|Xsl	eukaryotic translation initiation factor 3, subunit C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58770327-4	chr1	58769836	58770836	+	956.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25038.0	NM_009812	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165646578-3	chr1	165646086	165647086	+	956.7777710000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-12045.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24531626-7	chr7	24531112	24532112	+	956.761902	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153134, exon 2 of 3)	exon (NM_153134, exon 2 of 3)	964.0	NM_153134	210146.0	Mm.41108	NM_153134	ENSMUSG00000041037	Irgq	AF322649|FKSG27|Irgq1	immunity-related GTPase family, Q	protein-coding	1.0	1.0	4.5	2.0	1.5	4.5
Merged-chr10-57637207-4	chr10	57636708	57637708	+	956.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039051, intron 1 of 4)	intron (NM_001039051, intron 1 of 4)	5227.0	NM_001039051	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-60940782-4	chr1	60940287	60941287	+	956.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31762.0	NM_001281976	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	8.0	23.0	25.0	8.5	13.0	37.0
Merged-chr11-116643440-4	chr11	116642926	116643926	+	956.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10887.0	NM_030206	114886.0	Mm.34598	NM_030206	ENSMUSG00000020810	Cygb	3110001K20Rik|HGb|Staap	cytoglobin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-25521674-2	chr5	25521174	25522174	+	956.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	5607.0	NM_198621	242891.0	Mm.291521	NM_198621	ENSMUSG00000038044	Cct8l1	Gm443	chaperonin containing TCP1, subunit 8 (theta)-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180043879-4	chr2	180043378	180044378	+	956.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178750, intron 1 of 10)	intron (NM_178750, intron 1 of 10)	1395.0	NM_178750	269397.0	Mm.63068	NM_178750	ENSMUSG00000039086	Ss18l1	A230053O16Rik|CREST	SS18, nBAF chromatin remodeling complex subunit like 1	protein-coding	0.0	0.0	0.5	0.0	7.0	1.0
Merged-chr12-111417587-4	chr12	111417090	111418090	+	956.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028807, exon 1 of 13)	5' UTR (NM_028807, exon 1 of 13)	145.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-69128986-4	chr2	69128481	69129481	+	956.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-6819.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27933679-4	chr7	27933198	27934198	+	956.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4268.0	NM_028538	73430.0	Mm.379224	NM_028538	ENSMUSG00000070709	Zfp974	1700049G17Rik|AV321011|BB026409	zinc finger protein 974	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108656828-2	chr6	108656328	108657328	+	956.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_104577, intron 1 of 6)	intron (NR_104577, intron 1 of 6)	-3801.0	NM_011498	20893.0	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92092745-2	chr5	92092245	92093245	+	956.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-9001.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	18.0	7.0	9.5	1.0	7.0	16.0
Merged-chr12-100615340-4	chr12	100614837	100615837	+	956.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153587, intron 5 of 17)	intron (NM_153587, intron 5 of 17)	-94515.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10318836-4	chr17	10318332	10319332	+	956.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159517, exon 1 of 8)	exon (NM_001159517, exon 1 of 8)	529.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122880128-4	chr8	122879606	122880606	+	956.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31732.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	3.0	4.5	0.0	13.5	1.5	0.0
Merged-chr2-127341228-4	chr2	127340685	127341685	+	956.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291003)	promoter-TSS (NM_001291003)	-451.0	NM_001291003	215095.0	Mm.31313	NM_172539	ENSMUSG00000050468	Astl	7420700F21|C87576|Sas1b	astacin-like metalloendopeptidase (M12 family)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-56888117-4	chr14	56887617	56888617	+	956.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177627, intron 2 of 2)	intron (NM_177627, intron 2 of 2)	1274.0	NM_001360643	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111035837-4	chr9	111035336	111036336	+	956.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008522, intron 14 of 16)	intron (NM_008522, intron 14 of 16)	16544.0	NM_008522	17002.0	Mm.282359	NM_008522	ENSMUSG00000032496	Ltf	Csp82|Lf|MMS10R|Ms10r	lactotransferrin	protein-coding	0.0	15.0	3.5	3.5	6.5	2.0
Merged-chr5-30135311-3	chr5	30134808	30135808	+	956.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178878, intron 7 of 19)	MTC|LTR|ERVL-MaLR	19672.0	NM_178878	97212.0	Mm.200497	NM_178878	ENSMUSG00000025745	Hadha	C77020|Mtpa	hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21945032-4	chr10	21944556	21945556	+	956.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 2 of 13)	PB1D9|SINE|Alu	-33616.0	NM_001161847	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36277457-4	chr1	36276961	36277961	+	956.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4036.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95142000-3	chr3	95141496	95142496	+	956.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027206, intron 1 of 1)	intron (NM_027206, intron 1 of 1)	364.0	NM_027206	69769.0	Mm.34368	NM_027206	ENSMUSG00000013707	Tnfaip8l2	1810019A08Rik|AW610835|TIPE2	tumor necrosis factor, alpha-induced protein 8-like 2	protein-coding	23.5	38.0	28.5	8.5	45.0	34.5
Merged-chr7-97112645-2	chr7	97112145	97113145	+	956.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	30894.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	3.0	0.5	0.0	0.0	2.0	1.5
Merged-chr12-21389638-3	chr12	21389132	21390132	+	956.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011739)	TTS (NM_011739)	-16000.0	NM_009615	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	24.0	16.5	32.5	4.5	8.0	1.0
Merged-chr13-55517212-3	chr13	55516761	55517761	+	956.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3815.0	NM_001114088	67399.0	Mm.275648	NM_026131	ENSMUSG00000021493	Pdlim7	LMP	PDZ and LIM domain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-31350441-3	chr12	31349952	31350952	+	956.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007861, intron 1 of 13)	intron (NM_007861, intron 1 of 13)	1019.0	NM_007861	13382.0	Mm.3131	NM_007861	ENSMUSG00000020664	Dld	-	dihydrolipoamide dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114282785-4	chr6	114282260	114283260	+	956.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178703, exon 1 of 16)	5' UTR (NM_178703, exon 1 of 16)	125.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8998515-4	chr3	8998016	8999016	+	956.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	5688.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	28.5	63.5	51.0	13.5	74.0	41.5
Merged-chr1-160246142-3	chr1	160245614	160246614	+	956.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038621, intron 4 of 8)	intron (NM_001038621, intron 4 of 8)	-33222.0	NM_009786	12301.0	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	2.5	2.5	2.0	3.5	12.0	2.0
Merged-chr9-100711121-3	chr9	100710619	100711619	+	956.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009282, intron 2 of 33)	intron (NM_009282, intron 2 of 33)	67671.0	NM_001357265	20842.0	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	9.0	2.0	5.0	10.0	0.0	2.5
Merged-chr7-110381773-3	chr7	110381271	110382271	+	956.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 17 of 40)	intron (NM_177324, intron 17 of 40)	160068.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28720926-3	chr17	28720412	28721412	+	956.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168513, intron 3 of 11)	intron (NM_001168513, intron 3 of 11)	28344.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154687023-4	chr2	154686532	154687532	+	956.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	30006.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113999169-2	chr5	113998650	113999650	+	956.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4585.0	NM_010018	13142.0	Mm.20115	NM_010018	ENSMUSG00000042096	Dao	AI987963|DAAO|DAMOX|Dao-1|Dao1	D-amino acid oxidase	protein-coding	1.0	15.0	9.0	5.0	15.5	7.0
Merged-chr6-94509895-4	chr6	94509417	94510417	+	956.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026255, intron 2 of 9)	intron (NM_026255, intron 2 of 9)	9603.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	32.5	38.0	39.0	42.0	91.0	58.5
Merged-chr12-72408117-2	chr12	72407552	72408552	+	956.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_153457, intron 1 of 8)	intron (NM_153457, intron 1 of 8)	1002.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	3.5	6.5	0.5	0.0	8.0	0.0
Merged-chr9-22390131-2	chr9	22389631	22390631	+	956.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028390)	promoter-TSS (NM_028390)	-925.0	NM_028390	68743.0	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-128632788-4	chr1	128632345	128633345	+	956.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40546.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	38.5	66.5	47.0	22.5	22.0	39.5
Merged-chr10-9722792-4	chr10	9722295	9723295	+	956.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38073.0	NR_038036	620417.0	Mm.378085	NR_038036	ENSMUSG00000111901	Gm6150	-	predicted gene 6150	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128168156-4	chr8	128167666	128168666	+	956.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	110059.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166682671-4	chr2	166682178	166683178	+	956.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	31154.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34777452-12	chr2	34776944	34777944	+	956.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_022310)	TTS (NM_022310)	5354.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71301510-4	chr17	71301016	71302016	+	956.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	9495.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	36.5	131.5	87.0	91.0	169.0	103.0
Merged-chr6-54163024-4	chr6	54162538	54163538	+	956.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	-101820.0	NM_001311133	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	17.0	10.0	7.0	7.0	5.5	15.5
Merged-chr9-119093589-4	chr9	119093072	119094072	+	956.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_121571)	promoter-TSS (NR_121571)	-70.0	NM_019676	18799.0	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99001528-4	chr9	99001016	99002016	+	956.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011810, intron 4 of 4)	intron (NM_011810, intron 4 of 4)	15143.0	NM_001122851	23873.0	Mm.74605	NM_011810	ENSMUSG00000032463	Faim	-	Fas apoptotic inhibitory molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-64989653-4	chr18	64989166	64990166	+	956.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	-33861.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122059748-4	chr5	122059177	122060177	+	956.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9826.0	NM_001312908	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23821850-4	chr11	23821349	23822349	+	956.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50879.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160060273-4	chr2	160059783	160060783	+	956.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43630.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	17.0	5.0	9.0	5.0	16.0	22.0
Merged-chr9-104764117-3	chr9	104763598	104764598	+	956.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028719, intron 2 of 15)	GA-rich|Low_complexity|Low_complexity	194615.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	4.0	0.0	0.0	0.0	6.5	1.0
Merged-chr7-120948297-4	chr7	120947819	120948819	+	956.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025298)	TTS (NM_025298)	30575.0	NM_001164096	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54714289-4	chr14	54713782	54714782	+	956.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2108.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	7.0	6.0	15.0	1.5	7.0	5.0
Merged-chr9-64340647-4	chr9	64340148	64341148	+	956.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172519)	promoter-TSS (NM_172519)	125.0	NM_001177784	213550.0	Mm.268341	NM_172519	ENSMUSG00000032396	Dis3l	AV340375	DIS3 like exosome 3'-5' exoribonuclease	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94372883-4	chr10	94372372	94373372	+	956.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	60923.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34079791-4	chr17	34079315	34080315	+	956.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12564.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	26.5	5.0	1.5	1.0	17.0	6.0
Merged-chr11-85525825-3	chr11	85525337	85526337	+	956.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 16 of 25)	intron (NM_138681, intron 16 of 25)	172673.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99139672-4	chr9	99139154	99140154	+	956.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 1 of 23)	CpG	557.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-47349923-4	chr4	47349411	47350411	+	956.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3311.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-81126893-4	chr3	81126398	81127398	+	956.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	90482.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	5.5	51.0	45.0	15.0	38.0	47.5
Merged-chr19-8715000-6	chr19	8714490	8715490	+	956.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161413, intron 1 of 9)	intron (NM_001161413, intron 1 of 9)	-1093.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-144203107-4	chr1	144202611	144203611	+	956.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25739.0	NM_153171	246709.0	Mm.38271	NM_153171	ENSMUSG00000051079	Rgs13	-	regulator of G-protein signaling 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31401107-4	chr14	31400604	31401604	+	956.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	16573.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41360698-2	chr19	41360198	41361198	+	956.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	RMER1B|Other|Other	24372.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	7.0	13.5	14.5	0.0	16.0	19.0
Merged-chr16-52182223-4	chr16	52181718	52182718	+	956.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 13 of 17)	intron (NM_001033238, intron 13 of 17)	150669.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53594444-2	chr4	53593944	53594944	+	956.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133891, intron 15 of 15)	intron (NM_133891, intron 15 of 15)	-37027.0	NM_176966	319636.0	Mm.103464	NM_176966	ENSMUSG00000054752	Fsd1l	A230072O16Rik|Ccdc10|Csdufd1|Fsd1nl	fibronectin type III and SPRY domain containing 1-like	protein-coding	0.0	0.0	6.5	0.0	0.0	0.0
Merged-chr18-76931226-2	chr18	76930726	76931726	+	956.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025409, intron 1 of 2)	intron (NM_025409, intron 1 of 2)	1199.0	NM_025409	66191.0	Mm.28593	NM_025409	ENSMUSG00000090000	Ier3ip1	1110057H19Rik|AI644142|AL022842|AL022863|AV026606	immediate early response 3 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64040888-2	chr5	64040388	64041388	+	956.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-4085.0	NR_045384	74757.0	Mm.159329	NR_045384	ENSMUSG00000106219	5830416I19Rik	-	RIKEN cDNA 5830416I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113667889-2	chr6	113667389	113668389	+	956.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172161, intron 3 of 12)	intron (NM_172161, intron 3 of 12)	-29161.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55645102-4	chr4	55644592	55645592	+	956.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112617.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.5	6.0	0.5	2.0	15.5	0.0
Merged-chr10-78203273-2	chr10	78202773	78203773	+	956.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081055, intron 14 of 22)	intron (NM_001081055, intron 14 of 22)	-18124.0	NM_029546	110816.0	Mm.103522	NM_029546	ENSMUSG00000032834	Pwp2	6530411D08Rik|Pwp2h|wdp103	PWP2 periodic tryptophan protein homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11484484-2	chr8	11483984	11484984	+	956.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5985.0	NM_011227	19332.0	Mm.37632	NM_011227	ENSMUSG00000031504	Rab20	AA536966|D8Ertd350e	RAB20, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-97283022-4	chr10	97282521	97283521	+	956.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER121|DNA|TcMar?	-140457.0	NR_039547	100628616.0		NR_039547	ENSMUSG00000105557	Mir3966	mmu-mir-3966|mu-mir-3966	microRNA 3966	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147398552-2	chr4	147398052	147399052	+	956.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	RMER17D2|LTR|ERVK	-154725.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156146786-2	chr2	156146286	156147286	+	956.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164216)	TTS (NM_001164216)	2553.0	NM_025946	67067.0	Mm.371623	NM_025946	ENSMUSG00000067847	Romo1	2010100O12Rik|AI853864	reactive oxygen species modulator 1	protein-coding	20.5	30.0	10.0	9.5	71.5	59.5
Merged-chr13-37540769-2	chr13	37540269	37541269	+	956.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	195424.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100676750-2	chr15	100676250	100677250	+	956.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033612, intron 6 of 7)	intron (NM_033612, intron 6 of 7)	-7250.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	1.0	3.0	9.5	2.0	1.0	11.0
Merged-chr11-79705159-2	chr11	79704659	79705659	+	956.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6810.0	NR_029579	387188.0		NR_029579	ENSMUSG00000065395	Mir193a	Mir193|Mirn193|mir-193a|mmu-mir-193|mmu-mir-193a	microRNA 193a	ncRNA	6.5	48.0	16.0	11.0	29.0	4.5
Merged-chr4-107989146-4	chr4	107988650	107989650	+	956.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146255, intron 2 of 10)	intron (NM_146255, intron 2 of 10)	20816.0	NM_146255	242607.0	Mm.192040	NM_146255	ENSMUSG00000008932	Slc1a7	A930031E15Rik|Eaat5	solute carrier family 1 (glutamate transporter), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-105299412-2	chr13	105298912	105299912	+	956.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4927.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63480318-2	chr4	63479818	63480818	+	956.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008791, intron 1 of 12)	MIR|SINE|MIR	15673.0	NM_001008793	73750.0	Mm.300397	NM_028640	ENSMUSG00000039137	Whrn	1110035G07Rik|AW122018|AW742671|C430046P22Rik|Dfnb31|Ush2d|wi	whirlin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65497653-3	chr18	65497200	65498200	+	956.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	66703.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	2.5	7.0	2.5	6.0	29.0	35.0
Merged-chr8-119876809-4	chr8	119876311	119877311	+	956.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_146219, exon 5 of 5)	exon (NM_146219, exon 5 of 5)	14506.0	NM_146219	234796.0	Mm.86446	NM_146219	ENSMUSG00000031828	Klhl36	-	kelch-like 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109455323-4	chr8	109454827	109455827	+	956.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38700.0	NM_019938	56523.0	Mm.42166	NM_019938	ENSMUSG00000031727	Pmfbp1	1700016D22Rik|F77|Stap	polyamine modulated factor 1 binding protein 1	protein-coding	3.0	5.5	7.0	3.0	6.5	6.5
Merged-chr8-13646896-4	chr8	13646380	13647380	+	956.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	30707.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	26.0	51.5	19.0	26.0	37.5	36.5
Merged-chr5-139285540-4	chr5	139285026	139286026	+	956.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	32029.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57555125-4	chr16	57554630	57555630	+	956.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	5888.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	23.5	43.5	43.0	18.5	60.0	17.5
Merged-chr7-19635560-3	chr7	19635081	19636081	+	956.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019649, intron 10 of 13)	intron (NM_019649, intron 10 of 13)	-6143.0	NM_009046	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41930077-3	chr10	41929557	41930557	+	956.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 12 of 17)	RSINE1|SINE|B4	42618.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132030208-4	chr4	132029661	132030661	+	956.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	L1MC5|LINE|L1	18917.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3710598-4	chr4	3710000	3711000	+	956.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	-4464.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	15.5	81.5	27.5	12.0	62.5	32.0
Merged-chr10-79695394-4	chr10	79694876	79695876	+	956.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008504)	TTS (NM_008504)	1550.0	NM_001302499	16904.0	Mm.378960	NM_008504	ENSMUSG00000054206	Gzmm	Lmet1|MMET-1	granzyme M (lymphocyte met-ase 1)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26691474-4	chr17	26690968	26691968	+	956.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025272, intron 2 of 3)	intron (NM_025272, intron 2 of 3)	15072.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128981313-4	chr4	128980798	128981798	+	956.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11926.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54973036-4	chr6	54972520	54973520	+	956.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172729)	promoter-TSS (NM_172729)	-408.0	NM_172729	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	52.5	55.5	34.5	26.0	40.0	35.0
Merged-chr17-48275639-4	chr17	48275110	48276110	+	956.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172623)	TTS (NM_172623)	11315.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	75.5	131.5	99.0	43.5	89.5	83.5
Merged-chr4-12245146-4	chr4	12244657	12245657	+	956.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73142.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-37062879-2	chr8	37062379	37063379	+	956.416626	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38641.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	1.5	4.0	8.0	5.0	0.0	2.5
Merged-chr2-58055554-2	chr2	58055054	58056054	+	956.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2802.0	NM_029972	77767.0	Mm.91712	NM_029972	ENSMUSG00000026830	Ermn	A330104H05Rik|AI854460|ermin|mKIAA1189	ermin, ERM-like protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130878685-4	chr4	130878171	130879171	+	956.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34663.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53237698-3	chr15	53237201	53238201	+	956.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	108482.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33562485-4	chr17	33561993	33562993	+	956.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053214, intron 1 of 27)	intron (NM_053214, intron 1 of 27)	6786.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	68.5	93.5	132.5	72.0	109.5	94.5
Merged-chr12-32855191-2	chr12	32854691	32855691	+	956.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31075.0	NR_045032	100504486.0	Mm.440246	NR_045032		Gdap10	Gdap-ps	ganglioside-induced differentiation-associated-protein 10	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136714328-4	chr6	136713813	136714813	+	956.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145067, intron 19 of 25)	MIR3|SINE|MIR	-52420.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	21.0	21.0	36.0	14.5	29.0	13.5
Merged-chr10-19014235-10	chr10	19013661	19014661	+	956.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009397, intron 1 of 8)	(CAAAA)n|Simple_repeat|Simple_repeat	1249.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30051376-4	chr7	30050881	30051881	+	956.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178733)	promoter-TSS (NM_178733)	15.0	NM_011748	243906.0	Mm.347644	NM_011748	ENSMUSG00000053985	Zfp14	4732429I09Rik|Krox-9|Zfp-14|mKIAA1559	zinc finger protein 14	protein-coding	18.0	4.5	4.5	8.0	0.0	6.0
Merged-chr12-76676541-3	chr12	76676054	76677054	+	956.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013675, intron 1 of 35)	intron (NM_013675, intron 1 of 35)	33993.0	NM_013675	20741.0	Mm.32881	NM_013675	ENSMUSG00000021061	Sptb	AI842465|D330027P03Rik|Gm1301|Spnb-1|Spnb1|ja|jaundiced|mKIAA4219	spectrin beta, erythrocytic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75467979-3	chr11	75467433	75468433	+	956.3833619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291156)	promoter-TSS (NM_001291156)	-117.0	NM_001291156	380712.0	Mm.41393	NM_027249	ENSMUSG00000038217	Tlcd2	-	TLC domain containing 2	protein-coding	0.0	0.0	3.5	0.5	17.0	11.5
Merged-chr14-66791983-4	chr14	66791462	66792462	+	956.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76638.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	5.0	0.0	0.5	0.0	0.0	2.0
Merged-chr11-83705436-4	chr11	83704937	83705937	+	956.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081957, intron 2 of 2)	intron (NM_001081957, intron 2 of 2)	1381.0	NM_001081957	100034251.0	Mm.24097	NM_001081957	ENSMUSG00000069792	Wfdc17	Amwap|Gm11428	WAP four-disulfide core domain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-8494600-4	chr6	8494096	8495096	+	956.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14565.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-112000322-4	chr7	111999795	112000795	+	956.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	-23211.0	NM_133758	74996.0	Mm.16974	NM_133758	ENSMUSG00000059263	Usp47	4930502N04Rik|A630020C16Rik	ubiquitin specific peptidase 47	protein-coding	3.0	18.5	4.0	8.5	8.5	3.0
Merged-chr2-60323676-4	chr2	60323244	60324244	+	956.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013825, intron 24 of 34)	intron (NM_013825, intron 24 of 34)	-39260.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30397164-2	chr16	30396674	30397674	+	956.366699	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8644.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	4.5	17.0	13.0	1.0	8.0	3.5
Merged-chr1-144320214-4	chr1	144319725	144320725	+	956.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71121.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61971287-3	chr9	61970795	61971795	+	956.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 4 of 7)	intron (NM_028748, intron 4 of 7)	-24496.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93566359-4	chr2	93565815	93566815	+	956.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-76119.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	0.0	3.0	0.5	0.0	2.5	0.0
Merged-chr9-61056478-4	chr9	61055979	61056979	+	956.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39410.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108695463-3	chr6	108694974	108695974	+	956.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34540.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46979124-4	chr19	46978610	46979610	+	956.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164363, intron 1 of 17)	RSINE1|SINE|B4	-9543.0	NM_001164365	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	4.0	6.0	6.0	6.5	9.0	1.5
Merged-chr6-4545922-2	chr6	4545422	4546422	+	956.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40304.0	NM_007743	12843.0	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	1.5	0.0	2.0	1.5	0.0	1.5
Merged-chr7-99155530-3	chr7	99155021	99156021	+	956.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026384, intron 7 of 7)	intron (NM_026384, intron 7 of 7)	-14377.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119917249-3	chr11	119916773	119917773	+	956.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085498, intron 6 of 7)	intron (NM_001085498, intron 6 of 7)	3463.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67528382-7	chr7	67527926	67528926	+	956.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028144, intron 8 of 8)	intron (NR_028144, intron 8 of 8)	116810.0	NM_175124	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	32.5	79.0	56.0	60.5	110.5	63.5
Merged-chr4-39611235-4	chr4	39610753	39611753	+	956.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	160960.0	NM_001081095	75471.0	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding	8.0	16.5	9.0	21.0	10.0	13.0
Merged-chr6-24600277-3	chr6	24599763	24600763	+	956.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053098, intron 1 of 2)	intron (NM_053098, intron 1 of 2)	2492.0	NM_053098	93677.0	Mm.332941	NM_053098	ENSMUSG00000029683	Lmod2	C-Lmod	leiomodin 2 (cardiac)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95211991-4	chr4	95211476	95212476	+	956.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-159754.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79109334-7	chr15	79108812	79109812	+	956.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177461, exon 1 of 16)	exon (NM_177461, exon 1 of 16)	329.0	NM_177461	27008.0	Mm.196480	NM_177461	ENSMUSG00000033039	Micall1	AI448246|D15Mit260|D15N2e|EST573322|EST820961|MIRab13|mKIAA1668	microtubule associated monooxygenase, calponin and LIM domain containing -like 1	protein-coding	30.0	88.0	49.0	55.5	104.5	94.5
Merged-chr19-57611321-4	chr19	57610808	57611808	+	956.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_181415, exon 1 of 29)	5' UTR (NM_181415, exon 1 of 29)	274.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	21.0	18.0	28.0	2.5	11.0	3.0
Merged-chr4-131920366-4	chr4	131919930	131920930	+	956.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102393)	promoter-TSS (NR_102393)	-401.0	NR_102393	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166447489-4	chr2	166446993	166447993	+	956.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015558)	promoter-TSS (NR_015558)	42.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129423880-4	chr6	129423378	129424378	+	956.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172732, exon 6 of 6)	3' UTR (NM_172732, exon 6 of 6)	15016.0	NM_001205364	232414.0	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96642605-7	chr15	96642174	96643174	+	956.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134086)	promoter-TSS (NM_134086)	239.0	NM_001166458	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-174471025-3	chr2	174470518	174471518	+	956.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025531, intron 1 of 5)	intron (NM_025531, intron 1 of 5)	1923.0	NM_025531	66390.0	Mm.182294	NM_025531	ENSMUSG00000016257	Prelid3b	2310042G06Rik|AA407013|Slmo2	PRELI domain containing 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34800048-3	chr19	34799548	34800548	+	956.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	20725.0	NR_029783	723826.0		NR_029783	ENSMUSG00000065594	Mir107	Mirn107|mir-107|mmu-mir-107	microRNA 107	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-52468277-3	chr18	52467796	52468796	+	956.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026040, intron 1 of 7)	intron (NM_026040, intron 1 of 7)	2603.0	NM_026040	67222.0	Mm.100617	NM_026040	ENSMUSG00000024528	Srfbp1	2810036K01Rik|p49/STRAP	serum response factor binding protein 1	protein-coding	26.5	52.0	48.5	6.0	11.0	2.5
Merged-chr18-73703186-4	chr18	73702652	73703652	+	956.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155448)	promoter-TSS (NR_155448)	589.0	NM_008540	17128.0	Mm.100399	NM_008540	ENSMUSG00000024515	Smad4	AW743858|D18Wsu70e|DPC4|Madh4	SMAD family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-55121204-4	chr15	55120718	55121718	+	956.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145470, intron 1 of 8)	intron (NM_145470, intron 1 of 8)	-7636.0	NR_045093	100503794.0	Mm.360519	NR_045093	ENSMUSG00000053749	Gm9920	-	predicted gene 9920	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63985319-4	chr9	63984810	63985810	+	956.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	36749.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21011177-4	chr9	21010666	21011666	+	956.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-4774.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29867858-2	chr2	29867358	29868358	+	956.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1636.0	NM_207298	99151.0	Mm.296336	NM_207298	ENSMUSG00000039787	Cercam	2600006K01Rik|AL024097|Ceecam1	cerebral endothelial cell adhesion molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43875596-4	chr4	43875088	43876088	+	956.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016678)	promoter-TSS (NM_016678)	58.0	NM_016678	53614.0	Mm.331573	NM_016678	ENSMUSG00000028476	Reck	St15|mRECK	reversion-inducing-cysteine-rich protein with kazal motifs	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-21139420-4	chr2	21138919	21139919	+	956.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65946.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-109987029-3	chr7	109986559	109987559	+	956.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153525)	promoter-TSS (NM_153525)	-829.0	NM_153525	233724.0	Mm.43212	NM_153525	ENSMUSG00000047554	Tmem41b	1500015G02Rik|1500031M19Rik|AU018901|D7Ertd70e|D7Ertd743e	transmembrane protein 41B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114281854-4	chr7	114281332	114282332	+	956.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-5716.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	0.0	1.0	0.5	0.0	0.5	1.5
Merged-chr4-6427584-4	chr4	6427081	6428081	+	956.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 10 of 30)	intron (NM_010945, intron 10 of 30)	26690.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92385422-2	chr16	92384922	92385922	+	956.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2739.0	NR_105054	101056236.0	Mm.149108	NR_105054		Gm29805	-	predicted gene, 29805	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15830308-4	chr17	15829823	15830823	+	956.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3737.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40681315-4	chr12	40680801	40681801	+	956.241699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 12 of 52)	intron (NM_172803, intron 12 of 52)	235248.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20998511-4	chr9	20997964	20998964	+	956.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4273.0	NM_023167	66163.0	Mm.427576	NM_023167	ENSMUSG00000003299	Mrpl4	1110017G11Rik	mitochondrial ribosomal protein L4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127008356-4	chr7	127007847	127008847	+	956.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080638, intron 1 of 14)	intron (NM_080638, intron 1 of 14)	6247.0	NM_080638	78388.0	Mm.228797	NM_080638	ENSMUSG00000030681	Mvp	2310009M24Rik|LRP|VAULT1	major vault protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111759875-3	chr12	111759380	111760380	+	956.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361610, intron 1 of 14)	intron (NM_001361610, intron 1 of 14)	1012.0	NM_001025361	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59864890-3	chr4	59864393	59865393	+	956.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 2 of 8)	intron (NM_172468, intron 2 of 8)	50163.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	8.5	32.0	23.0	8.5	32.0	23.0
Merged-chr16-42190438-3	chr16	42189996	42190996	+	956.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112973.0	NR_105858	102466172.0		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-30035274-4	chr6	30034781	30035781	+	956.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-12707.0	NM_001164228	18181.0	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	0.0	1.5	2.5	0.0	6.5	2.0
Merged-chr2-14224568-4	chr2	14224056	14225056	+	956.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-4858.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117897951-4	chr10	117897454	117898454	+	956.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27505.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	32.0	90.0	64.0	30.0	158.0	54.5
Merged-chr14-56811151-4	chr14	56810612	56811612	+	956.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152252)	promoter-TSS (NR_152252)	352.0	NM_001253753	219105.0	Mm.473172	NM_144842	ENSMUSG00000040123	Zmym5	9830124H08Rik	zinc finger, MYM-type 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117338687-3	chr11	117338170	117339170	+	956.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113488, intron 1 of 9)	intron (NM_001113488, intron 1 of 9)	6357.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-118044453-3	chr3	118043956	118044956	+	956.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-175520.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135283526-4	chr1	135283044	135284044	+	956.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159624, intron 1 of 9)	CpG	540.0	NM_145417	215615.0	Mm.291048	NM_145417	ENSMUSG00000041926	Rnpep	-	arginyl aminopeptidase (aminopeptidase B)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84582014-4	chr1	84581537	84582537	+	956.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152915, intron 3 of 12)	intron (NM_152915, intron 3 of 12)	-113802.0	NR_039588	100628595.0		NR_039588	ENSMUSG00000093254	Mir5126	mir-5126|mmu-mir-5126|mu-mir-5126	microRNA 5126	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24171316-4	chr17	24170801	24171801	+	956.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-1623.0	NM_001361531	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	172.5	388.5	251.0	84.5	215.5	164.0
Merged-chr6-35544517-4	chr6	35544022	35545022	+	956.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1I-int|LTR|ERVL-MaLR	-4634.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123921949-6	chr4	123921496	123922496	+	956.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017475, intron 3 of 6)	intron (NM_017475, intron 3 of 6)	4563.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	45.5	64.5	61.0	14.5	54.0	44.0
Merged-chr11-75155331-3	chr11	75154819	75155819	+	956.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 15 of 18)	intron (NM_001002764, intron 15 of 18)	12833.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0.5	2.0	7.0	3.5	4.0	2.0
Merged-chr11-103264683-3	chr11	103264205	103265205	+	956.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	2696.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-99142401-4	chr14	99141914	99142914	+	956.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029320, intron 9 of 17)	intron (NM_029320, intron 9 of 17)	-42644.0	NR_153390	72662.0	Mm.163339	NM_028315	ENSMUSG00000033166	Dis3	2810028N01Rik	DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118098463-4	chr14	118097964	118098964	+	956.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	34301.0	NM_029578	76355.0	Mm.251537	NM_029578	ENSMUSG00000022130	Tgds	2610017J16Rik|2610025M23Rik|AI648925	TDP-glucose 4,6-dehydratase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-72319344-3	chr4	72318843	72319843	+	956.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	118099.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34637591-2	chr17	34637092	34638092	+	956.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7291.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	79.0	160.0	93.5	61.0	127.0	104.0
Merged-chr11-49848583-4	chr11	49848079	49849079	+	956.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016961, intron 1 of 11)	intron (NM_016961, intron 1 of 11)	1828.0	NM_016961	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-34514297-2	chr14	34513797	34514797	+	956.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_030062, intron 2 of 2)	intron (NM_030062, intron 2 of 2)	8504.0	NM_030062	78243.0	Mm.117483	NM_030062	ENSMUSG00000021797	9230112D13Rik	-	RIKEN cDNA 9230112D13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79883884-4	chr10	79883381	79884381	+	956.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011178)	TTS (NM_011178)	-2431.0	NM_015779	50701.0	Mm.262194	NM_015779	ENSMUSG00000020125	Elane	Ela2|F430011M15Rik|NE	elastase, neutrophil expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85084615-5	chr8	85084008	85085008	+	956.14447	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010764, intron 2 of 23)	intron (NM_010764, intron 2 of 23)	1239.0	NM_010764	17159.0	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	54.5	68.0	95.0	35.5	82.0	114.0
Merged-chr11-55039797-4	chr11	55039309	55040309	+	956.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6338.0	NM_013472	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110420717-4	chr11	110420212	110421212	+	956.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	21610.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-89268996-4	chr9	89268493	89269493	+	956.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57609.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-98351583-4	chr9	98351081	98352081	+	956.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357445, intron 1 of 3)	intron (NM_001357445, intron 1 of 3)	55011.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	37.0	43.0	66.0	71.5	126.0	86.5
Merged-chr14-65345239-4	chr14	65344744	65345744	+	956.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13432.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	35.5	92.5	61.0	16.5	41.0	22.0
Merged-chr18-38404470-4	chr18	38403978	38404978	+	956.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR48|LTR|ERV1	-14429.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46127993-4	chr11	46127477	46128477	+	956.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311209)	promoter-TSS (NM_001311209)	73.0	NM_001311209	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55925143-3	chr4	55924635	55925635	+	956.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-392660.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45449045-2	chr7	45448545	45449545	+	956.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_030678, intron 12 of 15)	intron (NM_030678, intron 12 of 15)	10841.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-105466967-4	chr11	105466466	105467466	+	956.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10231.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33978115-4	chr17	33977636	33978636	+	956.0833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_004446, intron 2 of 5)	CpG-6269	655.0	NR_004446	630499.0	Mm.440940	NM_001081015		H2-K2	EG630499|Gm7035|H-2K1|H-2K1K|H-2K2|H2-K1	histocompatibility 2, K region locus 2	pseudo	75.0	251.0	134.0	75.5	212.5	108.5
Merged-chr4-108068131-4	chr4	108067625	108068625	+	956.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011327, intron 12 of 15)	intron (NM_011327, intron 12 of 15)	-19232.0	NR_105823	102465213.0		NR_105823	ENSMUSG00000098980	Mir6397	Gm28004|mmu-mir-6397	microRNA 6397	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143043510-4	chr5	143043008	143044008	+	956.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	69512.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-105397665-4	chr14	105397157	105398157	+	956.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29902.0	NR_045859	71362.0	Mm.410781	NR_045859	ENSMUSG00000115548	5430440P10Rik	-	RIKEN cDNA 5430440P10 gene	ncRNA	0.0	0.0	1.0	0.0	3.0	2.0
Merged-chr3-131894593-4	chr3	131894159	131895159	+	956.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-190633.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	9.5	9.0	18.0	14.5	0.5	9.0
Merged-chr5-64959232-4	chr5	64958693	64959693	+	956.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359180, intron 1 of 1)	intron (NM_001359180, intron 1 of 1)	903.0	NM_001359180	21899.0	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117352908-4	chr2	117352404	117353404	+	956.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10027.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-27253821-4	chr8	27253278	27254278	+	956.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-6549.0	NM_007918	13685.0	Mm.6700	NM_007918	ENSMUSG00000031490	Eif4ebp1	4e-bp1|AA959816|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding	8.0	5.0	0.0	0.0	0.5	0.0
Merged-chr19-6668748-4	chr19	6668225	6669225	+	956.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-125655.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125440745-4	chr5	125440245	125441245	+	956.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029752)	promoter-TSS (NM_029752)	-823.0	NM_001359486	76809.0	Mm.290720	NM_029752	ENSMUSG00000037905	Bri3bp	2410150I18Rik|AI841257|AW742481	Bri3 binding protein	protein-coding	1.5	0.0	0.0	0.0	0.0	0.0
Merged-chr11-71159654-4	chr11	71159158	71160158	+	956.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040696, intron 12 of 14)	CT-rich|Low_complexity|Low_complexity	-14954.0	NM_001004142	195046.0	Mm.240227	NM_001004142	ENSMUSG00000069830	Nlrp1a	CARD7|DEFCAP|Gm14|Gm15|NAC|Nalp1|Nalp1a|Nlrp1|PP1044	NLR family, pyrin domain containing 1A	protein-coding	3.0	42.0	31.5	37.0	51.0	26.0
Merged-chr6-39527959-4	chr6	39527461	39528461	+	956.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172477, intron 1 of 18)	ORR1C2|LTR|ERVL-MaLR	29873.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-38864874-3	chr12	38864377	38865377	+	956.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347379, intron 11 of 11)	intron (NM_001347379, intron 11 of 11)	81166.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148454305-3	chr2	148453812	148454812	+	956.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10777.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	1.0	2.5	2.5	1.0	2.5	2.5
Merged-chr3-41228726-1	chr3	41228226	41229226	+	956.0	f0_balb.idr	Intergenic	Intergenic	-145680.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137045457-2	chr5	137044957	137045957	+	956.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007457, intron 1 of 4)	intron (NM_007457, intron 1 of 4)	651.0	NM_007457	11769.0	Mm.833	NM_007457	ENSMUSG00000004849	Ap1s1	AP19	adaptor protein complex AP-1, sigma 1	protein-coding	4.0	2.5	1.5	0.0	6.5	8.0
Merged-chr10-67234241-2	chr10	67233741	67234741	+	956.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 13 of 25)	L1_Mur2|LINE|L1	48491.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87255453-2	chr3	87254954	87255954	+	956.0	f0_balb.idr|f1_balb.idr	intron (NM_030707, intron 6 of 7)	B4A|SINE|B4	8070.0	NM_030707	80891.0	Mm.45173	NM_030707	ENSMUSG00000015852	Fcrls	2810439C17Rik|9330158F12|FcRH2sc|Fcrh2|IFGP2|IgSR|MMAN-g|Msr2|moFcRH2sc	Fc receptor-like S, scavenger receptor	protein-coding	3.5	5.0	4.0	22.5	1.5	12.0
Merged-chr7-19235229-4	chr7	19234717	19235717	+	956.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207525, intron 1 of 1)	ID_B1|SINE|B4	6828.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50238034-2	chr11	50237534	50238534	+	956.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313968, intron 1 of 4)	intron (NM_001313968, intron 1 of 4)	498.0	NM_001313968	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131446739-4	chr1	131446237	131447237	+	956.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	80624.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	16.0	13.5	17.5	16.0	13.5	17.5
Merged-chr3-8756619-2	chr3	8756119	8757119	+	956.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89581.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70597277-2	chr14	70596735	70597735	+	956.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194345, intron 1 of 16)	intron (NM_194345, intron 1 of 16)	2600.0	NM_194345	239170.0	Mm.247582	NM_194345	ENSMUSG00000022095	Fam160b2	G430067P06Rik|Rai16	family with sequence similarity 160, member B2	protein-coding	0.0	3.0	1.0	1.5	0.0	5.5
Merged-chr18-56875424-3	chr18	56874931	56875931	+	956.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177115, intron 1 of 4)	MTD|LTR|ERVL-MaLR	50117.0	NM_177115	320253.0	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-107662204-2	chr7	107661704	107662704	+	956.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008905, intron 3 of 24)	intron (NM_008905, intron 3 of 24)	-3274.0	NM_001357437	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4867042-2	chr7	4866548	4867548	+	956.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026158)	promoter-TSS (NM_026158)	-869.0	NM_026158	67441.0	Mm.41385	NM_026158	ENSMUSG00000052605	Isoc2b	0610042E07Rik|AI553388|Isoc2	isochorismatase domain containing 2b	protein-coding	143.0	304.0	206.5	66.5	198.0	153.5
Merged-chr2-60907838-2	chr2	60907338	60908338	+	956.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-26400.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128171313-4	chr8	128170795	128171795	+	956.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106930.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-19985868-2	chr14	19985368	19986368	+	956.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8619.0	NM_001285909	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160084934-4	chr2	160084447	160085447	+	956.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68294.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	69.5	73.5	58.0	86.5	132.5	106.0
Merged-chr6-51586155-2	chr6	51585655	51586655	+	956.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361577, intron 5 of 6)	intron (NM_001361577, intron 5 of 6)	40862.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53216596-3	chr15	53216107	53217107	+	956.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	129576.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46828922-3	chr8	46828422	46829422	+	956.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008391, intron 6 of 8)	intron (NM_008391, intron 6 of 8)	89177.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172308316-2	chr1	172307760	172308760	+	956.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4107.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	0.5	2.0	0.0	6.0	3.5	14.5
Merged-chr13-51115950-4	chr13	51115433	51116433	+	956.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283029, intron 1 of 5)	intron (NM_001283029, intron 1 of 5)	14386.0	NM_001283029	20729.0	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128393077-4	chr7	128392576	128393576	+	956.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 3 of 4)	intron (NM_026418, intron 3 of 4)	25096.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	46.0	88.5	73.0	45.5	88.0	76.5
Merged-chr13-51316471-3	chr13	51315969	51316969	+	956.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-92149.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-77116904-4	chr8	77116402	77117402	+	956.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083906, intron 3 of 8)	intron (NM_001083906, intron 3 of 8)	214394.0	NM_001083906	110784.0	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61957762-2	chr9	61957262	61958262	+	956.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 7 of 7)	intron (NM_028748, intron 7 of 7)	-10963.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72154169-4	chr6	72153645	72154645	+	955.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011375, exon 7 of 7)	3' UTR (NM_011375, exon 7 of 7)	-30948.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105169880-4	chr1	105169382	105170382	+	955.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-186125.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	4.5	2.5	11.0	4.5	2.5	11.0
Merged-chr6-71444948-4	chr6	71444448	71445448	+	955.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-4311.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171038563-4	chr1	171038061	171039061	+	955.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19635.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-3084821-4	chr17	3084333	3085333	+	955.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003519)	promoter-TSS (NR_003519)	-650.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148708216-4	chr5	148707721	148708721	+	955.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-33619.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31466505-4	chr15	31465992	31466992	+	955.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172606, intron 23 of 25)	intron (NM_172606, intron 23 of 25)	-12803.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91740375-3	chr16	91739877	91740877	+	955.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	11006.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-68062217-4	chr18	68061761	68062761	+	955.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	129088.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102742768-4	chr15	102742267	102743267	+	955.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4142.0	NR_104334	102216269.0		NR_104334		Gm38436	Cistr|Cistr-act	predicted gene, 38436	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-14800074-4	chr14	14799566	14800566	+	955.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360516)	TTS (NM_001360516)	-20749.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	44.5	89.5	48.5	60.0	88.0	53.5
Merged-chr10-83922234-4	chr10	83921726	83922726	+	955.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	178471.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136570747-4	chr1	136570255	136571255	+	955.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54146.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29126714-4	chr7	29126220	29127220	+	955.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1569.0	NM_009109	20190.0	Mm.439745	NM_009109	ENSMUSG00000030592	Ryr1	AI528790|RYR-1|Ryr|skrr	ryanodine receptor 1, skeletal muscle	protein-coding	0.0	3.0	1.0	0.0	1.5	1.0
Merged-chr1-172191690-4	chr1	172191185	172192185	+	955.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151641, intron 11 of 13)	intron (NR_151641, intron 11 of 13)	15119.0	NM_001329871	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	0.0	2.0	0.5	0.0	0.0	1.0
Merged-chr10-4612082-3	chr10	4611597	4612597	+	955.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_126357, exon 1 of 8)	non-coding (NR_126357, exon 1 of 8)	108.0	NM_007956	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-61137654-3	chr2	61137147	61138147	+	955.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-162496.0	NR_045335	100038493.0	Mm.388076	NR_045335	ENSMUSG00000075325	Gm13582	-	predicted gene 13582	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77664291-3	chr10	77663775	77664775	+	955.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-22294.0	NM_001287074	252974.0	Mm.221237	NM_145855	ENSMUSG00000069581	Tspear	C330046G03Rik|ORF65|TSP-EAR|Tnep1	thrombospondin type laminin G domain and EAR repeats	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4258406-4	chr8	4257911	4258911	+	955.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183315, exon 2 of 2)	exon (NM_183315, exon 2 of 2)	863.0	NM_183315	330695.0	Mm.34210	NM_183315	ENSMUSG00000048644	Ctxn1	BC028881|Ctxn	cortexin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-80881917-4	chr13	80881409	80882409	+	955.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1475.0	NR_153410	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118118127-4	chr7	118117619	118118619	+	955.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019419)	TTS (NM_019419)	-1972.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	17.0	38.0	34.0	16.5	47.5	52.0
Merged-chr10-118581537-4	chr10	118581037	118582037	+	955.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25012.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-45024111-4	chr16	45023603	45024603	+	955.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69908.0	NM_026439	67896.0	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30137118-4	chr14	30136619	30137619	+	955.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 9 of 46)	intron (NM_001083616, intron 9 of 46)	114486.0	NM_175343	218865.0	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39562855-4	chr6	39562384	39563384	+	955.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5050.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84183545-4	chr15	84183041	84184041	+	955.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054088, intron 7 of 7)	intron (NM_054088, intron 7 of 7)	-8692.0	NM_178614	68653.0	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38420276-4	chr18	38419777	38420777	+	955.8583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	1370.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157838433-4	chr2	157837944	157838944	+	955.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025680, intron 11 of 15)	intron (NM_025680, intron 11 of 15)	-76209.0	NM_198627	277432.0	Mm.441156	NM_198627	ENSMUSG00000037843	Vstm2l	Gm691	V-set and transmembrane domain containing 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43554826-4	chr13	43554323	43555323	+	955.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081059, intron 2 of 8)	intron (NM_001081059, intron 2 of 8)	5368.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	20.0	87.5	35.0	47.0	138.0	50.0
Merged-chr15-5607619-6	chr15	5607123	5608123	+	955.8472289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111305.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16029541-7	chr19	16029044	16030044	+	955.839294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44469.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16315392-2	chr7	16314892	16315892	+	955.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133234, intron 3 of 3)	B1_Mur4|SINE|Alu	5809.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr15-7863740-4	chr15	7863228	7864228	+	955.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48178.0	NM_001301357	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77466587-2	chr11	77466087	77467087	+	955.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_139130, exon 4 of 10)	exon (NM_139130, exon 4 of 10)	2674.0	NM_139130	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47743208-2	chr17	47742701	47743701	+	955.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	B3|SINE|B2	5270.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.0	4.0	0.0	0.0	0.0	1.5
Merged-chr10-45018169-4	chr10	45017587	45018587	+	955.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49127.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6968664-2	chr19	6968164	6969164	+	955.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290349, intron 1 of 30)	intron (NM_001290349, intron 1 of 30)	1150.0	NM_008874	18797.0	Mm.273204	NM_008874	ENSMUSG00000024960	Plcb3	mKIAA4098	phospholipase C, beta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-35741958-4	chr13	35741441	35742441	+	955.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001123386, intron 1 of 6)	CpG	539.0	NM_001123386	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37778303-4	chr13	37777786	37778786	+	955.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-47752.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	9.0	25.0	23.5	24.0	50.5	25.5
Merged-chr15-95826617-3	chr15	95826113	95827113	+	955.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155276, intron 1 of 1)	intron (NR_155276, intron 1 of 1)	3459.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52424407-4	chr2	52423887	52424887	+	955.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182994, intron 1 of 5)	CpG	487.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125252907-4	chr6	125252409	125253409	+	955.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-12616.0	NR_015527	73870.0	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32647464-3	chr2	32646971	32647971	+	955.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146348, intron 1 of 14)	intron (NM_001146348, intron 1 of 14)	876.0	NM_001146348	13805.0	Mm.225297	NM_007932	ENSMUSG00000026814	Eng	AI528660|AI662476|CD105|Endo|S-endoglin	endoglin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36849668-4	chr17	36849179	36850179	+	955.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025599, intron 2 of 9)	intron (NM_001025599, intron 2 of 9)	12533.0	NM_001286726	22670.0	Mm.34587	NM_030698	ENSMUSG00000024457	Trim26	AI462198|Zfp173|Zfp1736	tripartite motif-containing 26	protein-coding	11.0	19.0	19.0	21.0	18.0	15.0
Merged-chr17-25823641-4	chr17	25823142	25824142	+	955.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173741)	promoter-TSS (NM_173741)	15.0	NM_173741	268933.0	Mm.95512	NM_173741	ENSMUSG00000025737	Wdr24	BC037651	WD repeat domain 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-72660553-4	chr11	72660046	72661046	+	955.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025985, intron 1 of 5)	PB1D9|SINE|Alu	-29456.0	NM_009671	11736.0	Mm.10313	NM_009671	ENSMUSG00000020790	Ankfy1	Ankhzn|ZFYVE14|mKIAA1255	ankyrin repeat and FYVE domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64003333-4	chr15	64002823	64003823	+	955.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144846, intron 1 of 11)	GA-rich|Low_complexity|Low_complexity	-5257.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116350895-3	chr9	116350424	116351424	+	955.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161744.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-66142429-4	chr2	66141869	66142869	+	955.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17576.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99026426-4	chr15	99025943	99026943	+	955.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3448.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101708641-4	chr11	101708130	101709130	+	955.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24326.0	NM_144831	217207.0	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116175898-4	chr4	116175400	116176400	+	955.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2528.0	NM_001099295	67323.0	Mm.45442	NM_001099295	ENSMUSG00000078593	1700042G07Rik	-	RIKEN cDNA 1700042G07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32164073-4	chr17	32163574	32164574	+	955.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008716, intron 2 of 32)	intron (NM_008716, intron 2 of 32)	2778.0	NM_008716	18131.0	Mm.439741	NM_008716	ENSMUSG00000038146	Notch3	AW229011|N3|hpbk	notch 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7936720-4	chr10	7936230	7937230	+	955.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138667, intron 1 of 6)	intron (NM_138667, intron 1 of 6)	16335.0	NM_001359534	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-41376184-4	chr8	41375704	41376704	+	955.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1507.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	39.0	138.0	105.5	20.5	70.5	29.5
Merged-chr9-114690341-4	chr9	114689837	114690837	+	955.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146229, intron 2 of 12)	intron (NM_146229, intron 2 of 12)	1506.0	NM_146229	235661.0	Mm.128627	NM_146229	ENSMUSG00000032435	Dync1li1	1110053F02Rik|Dnclic1|LIC-1	dynein cytoplasmic 1 light intermediate chain 1	protein-coding	6.5	0.0	3.5	5.5	2.0	2.0
Merged-chr14-54578387-4	chr14	54577896	54578896	+	955.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010590)	promoter-TSS (NM_010590)	-735.0	NM_010590	16475.0	Mm.100253	NM_010590	ENSMUSG00000022178	Ajuba	Jub	ajuba LIM protein	protein-coding	26.5	84.5	67.0	6.0	43.5	21.0
Merged-chr12-102730554-4	chr12	102730060	102731060	+	955.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1O|LTR|ERVL-MaLR	13101.0	NM_001142937	64113.0	Mm.291222	NM_022323	ENSMUSG00000096458	Moap1	AA987038|Map-1|Pnma4	modulator of apoptosis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-15065366-4	chr14	15064858	15065858	+	955.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	244543.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43061420-3	chr17	43060941	43061941	+	955.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 3 of 5)	intron (NM_178589, intron 3 of 5)	44886.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	13.5	78.5	41.5	66.0	144.5	101.5
Merged-chr14-47533834-4	chr14	47533352	47534352	+	955.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34582.0	NM_172599	100504663.0	Mm.287279	NM_172599	ENSMUSG00000037526	Atg14	4832427M01|Atg14L|D14Ertd114e|D14Ertd436e	autophagy related 14	protein-coding	70.0	110.0	136.5	7.0	21.0	12.5
Merged-chr3-79559313-4	chr3	79558813	79559813	+	955.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	8366.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-5576806-4	chr15	5576294	5577294	+	955.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045274, intron 2 of 4)	intron (NR_045274, intron 2 of 4)	80476.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142570863-3	chr3	142570351	142571351	+	955.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355403, intron 10 of 11)	intron (NM_001355403, intron 10 of 11)	10495.0	NM_001289493	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-17528053-3	chr11	17527553	17528553	+	955.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	270365.0	NM_001330649	57316.0	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-29841046-4	chr5	29840533	29841533	+	955.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105097.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46544746-3	chr18	46544264	46545264	+	955.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-18793.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-15729421-1	chr6	15728921	15729921	+	955.6666869999999	f0_balb.idr	intron (NM_175088, intron 2 of 4)	intron (NM_175088, intron 2 of 4)	8760.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46212687-2	chr18	46212187	46213187	+	955.6666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178872)	promoter-TSS (NM_178872)	-80.0	NM_178872	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136675567-3	chr1	136675060	136676060	+	955.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-7836.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5807322-3	chr17	5806834	5807834	+	955.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7844.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63429897-2	chr4	63429397	63430397	+	955.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008791, intron 7 of 12)	intron (NM_001008791, intron 7 of 12)	-26452.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99455822-3	chr5	99455287	99456287	+	955.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	MTC|LTR|ERVL-MaLR	-202860.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37830906-3	chr13	37830405	37831405	+	955.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	3512.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34866114-2	chr18	34865614	34866614	+	955.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4907.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30848665-5	chr5	30848105	30849105	+	955.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133350, intron 1 of 6)	L1MC4a|LINE|L1	-13202.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-100474175-3	chr9	100473660	100474660	+	955.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033543, intron 2 of 6)	intron (NM_001033543, intron 2 of 6)	12313.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64927608-4	chr1	64927105	64928105	+	955.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 2 of 7)	intron (NM_001039493, intron 2 of 7)	29219.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71789241-2	chr8	71788743	71789743	+	955.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63562.0	NM_028715	74015.0	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	0.0	3.0	0.0	0.0	0.0	2.0
Merged-chr16-43979831-6	chr16	43979292	43980292	+	955.634277	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001007460)	promoter-TSS (NM_001007460)	-742.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72163344-4	chr6	72162877	72163877	+	955.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40180.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-41135036-4	chr9	41134529	41135529	+	955.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	23033.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	18.0	47.5	31.0	25.0	22.5	33.0
Merged-chr11-77508270-4	chr11	77507763	77508763	+	955.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001004144)	TTS (NM_001004144)	5010.0	NM_001024920	216964.0	Mm.341211	NM_001024920	ENSMUSG00000044328	Trp53i13	2410019G02Rik|Tp53i13	transformation related protein 53 inducible protein 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55077491-4	chr11	55076977	55077977	+	955.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177471, intron 1 of 6)	intron (NM_177471, intron 1 of 6)	654.0	NM_177471	52570.0	Mm.22361	NM_177471	ENSMUSG00000049588	Ccdc69	2210021E03Rik|D11Ertd461e	coiled-coil domain containing 69	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119300344-4	chr2	119299859	119300859	+	955.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11617.0	NM_172269	228545.0	Mm.294761	NM_172269	ENSMUSG00000034216	Vps18	9930024E13Rik	VPS18 CORVET/HOPS core subunit	protein-coding	0.0	1.5	0.5	2.5	1.0	6.0
Merged-chr10-54052625-4	chr10	54052149	54053149	+	955.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 2 of 12)	MTD|LTR|ERVL-MaLR	23147.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128410712-2	chr10	128410212	128411212	+	955.599976	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104288)	promoter-TSS (NR_104288)	-161.0	NM_001358972	69917.0	Mm.46614	NM_027257	ENSMUSG00000025374	Nabp2	2610036N15Rik|Obfc2b|SSB1	nucleic acid binding protein 2	protein-coding	10.0	48.5	11.5	15.0	21.0	20.5
Merged-chr4-139203581-4	chr4	139203080	139204080	+	955.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	ID_B1|SINE|B4	9469.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	29.5	94.0	45.5	10.0	33.5	25.5
Merged-chr5-112249829-4	chr5	112249367	112250367	+	955.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021351, intron 3 of 5)	intron (NM_021351, intron 3 of 5)	2651.0	NM_001312884	12959.0	Mm.40324	NM_021351	ENSMUSG00000066975	Cryba4	-	crystallin, beta A4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57565810-4	chr9	57565308	57566308	+	955.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022813, intron 1 of 8)	intron (NM_022813, intron 1 of 8)	4864.0	NM_022813	24044.0	Mm.286069	NM_022813	ENSMUSG00000040188	Scamp2	AI875466|Sc2	secretory carrier membrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44434833-4	chr10	44434314	44435314	+	955.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23934.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114209076-4	chr11	114208582	114209582	+	955.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10824.0	NR_045930	73536.0	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-48548523-4	chr13	48548017	48549017	+	955.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-10245.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111778722-4	chr13	111778211	111779211	+	955.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	30282.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	8.0	0.0	3.5	0.0	5.0	1.0
Merged-chr6-43623636-3	chr6	43623135	43624135	+	955.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 2 of 8)	Lx7|LINE|L1	42643.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-82744535-3	chr7	82744042	82745042	+	955.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_046004, exon 3 of 4)	non-coding (NR_046004, exon 3 of 4)	11102.0	NR_046004	77800.0	Mm.444811	NR_046004	ENSMUSG00000086690	4933406J10Rik	A930009F24Rik	RIKEN cDNA 4933406J10 gene	ncRNA	0.0	12.0	2.0	6.5	3.5	0.0
Merged-chr4-63823347-4	chr4	63822841	63823841	+	955.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR104_Mam|LTR|Gypsy	37943.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-10229776-4	chr18	10229265	10230265	+	955.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47973.0	NM_009071	19877.0	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34621105-4	chr19	34620620	34621620	+	955.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053217, intron 2 of 2)	MTD|LTR|ERVL-MaLR	8691.0	NM_001362130	112419.0	Mm.440727	NM_053217	ENSMUSG00000067297	Ifit1bl2	2010002M12Rik|AW412491|Ifit1b	interferon induced protein with tetratricopeptide repeats 1B like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67260188-4	chr17	67259687	67260687	+	955.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	94272.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	109.0	201.5	96.5	29.0	58.5	52.5
Merged-chr9-4443096-4	chr9	4442614	4443614	+	955.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113180, intron 14 of 16)	B2_Mm2|SINE|B2	66562.0	NM_145609	78100.0	Mm.206549	NM_145609	ENSMUSG00000041124	Msantd4	8430410K20Rik|Mysantd4	Myb/SANT-like DNA-binding domain containing 4 with coiled-coils	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40832391-4	chr10	40831880	40832880	+	955.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027879, exon 15 of 15)	3' UTR (NM_027879, exon 15 of 15)	50763.0	NM_027879	71713.0	Mm.46063	NM_027879	ENSMUSG00000038446	Cdc40	1200003H23Rik|EHB3|PRP17	cell division cycle 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83899917-6	chr8	83899437	83900437	+	955.5238039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181039)	promoter-TSS (NM_181039)	-161.0	NM_181039	330814.0	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	11.0	5.5	4.5	0.0	0.0	4.0
Merged-chr8-85036047-4	chr8	85035534	85036534	+	955.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145390)	promoter-TSS (NM_145390)	-881.0	NM_145390	212999.0	Mm.220357	NM_145390	ENSMUSG00000031691	Tnpo2	1110034O24Rik|AA414969|AI464345|AI852433|IPO3|Knpb2b|Kpnb2b|TRN2	transportin 2 (importin 3, karyopherin beta 2b)	protein-coding	30.0	140.0	111.5	85.0	133.0	83.5
Merged-chr3-95669880-2	chr3	95669380	95670380	+	955.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	11159.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	42.5	52.5	39.5	35.0	37.0	31.5
Merged-chr6-124743060-2	chr6	124742560	124743560	+	955.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007881, exon 10 of 10)	3' UTR (NM_007881, exon 10 of 10)	-1981.0	NM_013535	14790.0	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166195215-4	chr2	166194704	166195704	+	955.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39521.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116029495-4	chr11	116028994	116029994	+	955.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172569)	promoter-TSS (NM_172569)	-822.0	NM_001286006	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-40356139-3	chr1	40355642	40356642	+	955.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356478, intron 8 of 10)	intron (NM_001356478, intron 8 of 10)	31553.0	NM_133193	107527.0	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23608518-2	chr16	23608018	23609018	+	955.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1401.0	NM_023386	67775.0	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117478294-3	chr4	117477777	117478777	+	955.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025739, intron 2 of 14)	intron (NM_025739, intron 2 of 14)	18775.0	NM_025739	66743.0	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	0.0	0.0	0.5	2.5	0.5	1.0
Merged-chr19-53392615-2	chr19	53392115	53393115	+	955.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1981.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-80063780-2	chr2	80063287	80064287	+	955.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	MIR|SINE|MIR	-24885.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	1.0	0.0	0.0	2.5	4.5	1.5
Merged-chr4-130785590-2	chr4	130785090	130786090	+	955.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6947.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32919795-2	chr2	32919295	32920295	+	955.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_146119, exon 8 of 14)	exon (NM_146119, exon 8 of 14)	41460.0	NM_199302	227738.0	Mm.248037	NM_199302	ENSMUSG00000026792	Lrsam1	-	leucine rich repeat and sterile alpha motif containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-172399046-2	chr2	172398546	172399546	+	955.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080820, intron 1 of 6)	intron (NM_001080820, intron 1 of 6)	5252.0	NM_001276423	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131037328-4	chr2	131036824	131037824	+	955.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3074.0	NR_105969	102465606.0		NR_105969	ENSMUSG00000098686	Mir6973b	Gm27815|mmu-mir-6973b	microRNA 6973b	ncRNA	10.5	20.0	24.5	7.0	34.0	22.5
Merged-chr2-165856879-2	chr2	165856379	165857379	+	955.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	1294.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	29.0	57.0	38.5	16.0	77.0	24.5
Merged-chr8-34744377-3	chr8	34743883	34744883	+	955.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63227.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	5.5	38.5	17.0	5.5	20.0	5.0
Merged-chr12-86893901-4	chr12	86893407	86894407	+	955.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9093.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-30206378-2	chr17	30205878	30206878	+	955.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356265, intron 5 of 5)	intron (NM_001356265, intron 5 of 5)	189802.0	NR_030688	623169.0	Mm.440508	NR_030688		Gm6402	EG623169	ribosomal protein S17 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-65561945-2	chr16	65561445	65562445	+	955.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026879, intron 1 of 5)	intron (NM_026879, intron 1 of 5)	752.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36743470-2	chr18	36742970	36743970	+	955.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010885, intron 2 of 2)	B1F|SINE|Alu	1117.0	NM_010885	17991.0	Mm.29867	NM_010885	ENSMUSG00000014294	Ndufa2	AV000592|B8|C1-B8|CI-B8	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25076273-3	chr9	25075792	25076792	+	955.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75489.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34391523-2	chr7	34391023	34392023	+	955.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1818.0	NM_025948	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6362319-2	chr19	6361819	6362819	+	955.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1371.0	NM_011750	22668.0	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107754760-2	chr13	107754260	107755260	+	955.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 5 of 14)	ORR1D2|LTR|ERVL-MaLR	67363.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129414327-3	chr2	129413823	129414823	+	955.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43184.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	1.5	25.5	16.5	77.5	195.0	67.5
Merged-chr15-94680854-4	chr15	94680346	94681346	+	955.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178789, intron 2 of 7)	RMER1A|Other|Other	51661.0	NM_178789	320709.0	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89456912-4	chr3	89456392	89457392	+	955.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310640, intron 1 of 3)	intron (NM_001310640, intron 1 of 3)	-2226.0	NM_026784	68603.0	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96570872-3	chr3	96570370	96571370	+	955.477783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4069.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	8.5	32.0	43.5	16.5	41.0	40.5
Merged-chr11-63093607-4	chr11	63093130	63094130	+	955.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027660, intron 7 of 7)	intron (NM_027660, intron 7 of 7)	31971.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184083275-3	chr1	184082775	184083775	+	955.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48894.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180698270-3	chr1	180697759	180698759	+	955.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1225.0	NM_013729	27217.0	Mm.103647	NM_013729	ENSMUSG00000026497	Mixl1	Mm1|Mml	Mix1 homeobox-like 1 (Xenopus laevis)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25900753-4	chr15	25900244	25901244	+	955.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 3 of 8)	intron (NM_001034851, intron 3 of 8)	-32808.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26360143-4	chr2	26359650	26360650	+	955.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037747)	promoter-TSS (NM_001037747)	-603.0	NM_001037747	332579.0	Mm.330064	NM_001037747	ENSMUSG00000026928	Card9	Gm782	caspase recruitment domain family, member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72096379-4	chr6	72095858	72096858	+	955.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1250.0	NM_001035228	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93962370-4	chr10	93961867	93962867	+	955.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001304572, exon 12 of 12)	3' UTR (NM_001304572, exon 12 of 12)	1496.0	NR_029764	723908.0		NR_029764	ENSMUSG00000065607	Mir331	Mirn331|mmu-mir-331	microRNA 331	ncRNA	178.5	356.5	283.5	59.0	122.0	99.5
Merged-chr19-32954448-4	chr19	32953942	32954942	+	955.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	196865.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180911429-2	chr1	180910929	180911929	+	955.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7155.0	NM_133705	69051.0	Mm.274180	NM_133705	ENSMUSG00000026520	Pycr2	1810018M05Rik|P5cr2	pyrroline-5-carboxylate reductase family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55446909-2	chr13	55446409	55447409	+	955.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038018, intron 1 of 15)	intron (NM_001038018, intron 1 of 15)	1578.0	NM_001112711	26385.0	Mm.10193	NM_011938	ENSMUSG00000074886	Grk6	Gprk6	G protein-coupled receptor kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134729005-4	chr4	134728506	134729506	+	955.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-24716.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6479175-4	chr2	6478662	6479662	+	955.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	126426.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119167832-3	chr4	119167342	119168342	+	955.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6014.0	NM_001145935	195522.0	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	7.0	7.5	0.0	0.0	8.5	5.0
Merged-chr6-137704453-3	chr6	137703948	137704948	+	955.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30634.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41016091-4	chr19	41015593	41016593	+	955.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4415.0	NR_155302	100861913.0	Mm.35204	NR_155302		C330026H20Rik	-	RIKEN cDNA C330026H20 gene	ncRNA	11.5	8.5	14.5	20.5	48.0	29.0
Merged-chr6-32591547-4	chr6	32591037	32592037	+	955.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3345.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5806120-4	chr19	5805624	5806624	+	955.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3452.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-111066568-4	chr11	111066080	111067080	+	955.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008425, intron 1 of 1)	intron (NM_008425, intron 1 of 1)	416.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	41.5	68.0	77.0	37.5	63.5	26.5
Merged-chr7-29491211-3	chr7	29490710	29491710	+	955.361084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081028, intron 2 of 22)	intron (NM_001081028, intron 2 of 22)	14250.0	NM_001081028	74206.0	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65376246-3	chr18	65375764	65376764	+	955.35553	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037294, intron 2 of 12)	intron (NM_001037294, intron 2 of 12)	17624.0	NM_001037294	225638.0	Mm.296528	NM_001037294	ENSMUSG00000032845	Alpk2	Gm549|Hak	alpha-kinase 2	protein-coding	3.5	0.0	2.0	5.5	0.0	2.0
Merged-chr5-105684151-4	chr5	105683641	105684641	+	955.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-15828.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.5	1.0	5.0	7.0	33.5	6.0
Merged-chr7-16153673-2	chr7	16153173	16154173	+	955.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347561, intron 7 of 8)	intron (NM_001347561, intron 7 of 8)	-21722.0	NM_001277988	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	0.0	1.0	0.5	0.0	1.0	0.0
Merged-chr1-177441102-3	chr1	177440678	177441678	+	955.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1173.0	NM_001355099	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14262330-4	chr2	14261844	14262844	+	955.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 6 of 29)	intron (NM_008625, intron 6 of 29)	1341.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123478576-4	chr8	123478110	123479110	+	955.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028260, intron 1 of 15)	RMER15|LTR|ERVL	748.0	NR_028260	114896.0	Mm.287475	NM_054070	ENSMUSG00000031967	Afg3l1	1700047G05Rik|3110061K15Rik	AFG3-like AAA ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31593680-4	chr14	31593167	31594167	+	955.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-16284.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-16358019-3	chr9	16357518	16358518	+	955.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 1 of 24)	intron (NM_001080814, intron 1 of 24)	20213.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92868642-4	chr16	92868068	92869068	+	955.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42494.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128133861-3	chr6	128133329	128134329	+	955.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175414, intron 1 of 8)	intron (NM_175414, intron 1 of 8)	9749.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	5.0	12.5	1.5	2.5	11.5	7.0
Merged-chr1-171607353-4	chr1	171606855	171607855	+	955.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102726)	promoter-TSS (NR_102726)	-21.0	NR_102726	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	4.0	25.0	23.5	5.5	12.5	17.5
Merged-chr1-180390993-4	chr1	180390485	180391485	+	955.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-60436.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-54925805-6	chr1	54925324	54926324	+	955.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	CpG	563.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122619095-3	chr3	122618590	122619590	+	955.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114665, intron 1 of 15)	CpG	624.0	NM_153118	214459.0	Mm.209491	NM_153118	ENSMUSG00000039735	Fnbp1l	2610318I01Rik|AW548221|TOCA1|toca-1	formin binding protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32151452-3	chr2	32150950	32151950	+	955.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172661, intron 1 of 29)	CpG	302.0	NM_001159634	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106453624-4	chr9	106453107	106454107	+	955.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021567)	promoter-TSS (NM_021567)	-231.0	NM_021567	59092.0	Mm.286394	NM_021567	ENSMUSG00000023495	Pcbp4	1200003L19Rik|AlphaCP-4	poly(rC) binding protein 4	protein-coding	4.0	6.0	2.5	0.0	0.0	0.5
Merged-chr18-46963096-5	chr18	46962554	46963554	+	955.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178377, intron 2 of 6)	intron (NM_178377, intron 2 of 6)	4178.0	NM_178377	69456.0	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2|Tg(Vav1-icre)A2Kio|Vav-cre|Vav-iCre|Vav1-Cre|VavCre	COMM domain containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17554331-4	chr12	17553860	17554860	+	955.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9487.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	6.0	0.0	5.5	10.0	0.5	3.0
Merged-chr5-121385112-4	chr5	121384608	121385608	+	955.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172275, intron 1 of 11)	intron (NM_172275, intron 1 of 11)	301.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	116.5	280.5	211.0	108.5	279.5	174.0
Merged-chr5-122285842-3	chr5	122285340	122286340	+	955.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177242, intron 1 of 5)	intron (NM_177242, intron 1 of 5)	1442.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21419402-4	chr10	21418915	21419915	+	955.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	42115.0	NM_178713	237320.0	Mm.90181	NM_178713	ENSMUSG00000037542	Aldh8a1	Raldh4	aldehyde dehydrogenase 8 family, member A1	protein-coding	0.0	24.0	1.5	3.5	4.0	0.0
Merged-chr16-22116274-4	chr16	22115772	22116772	+	955.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	RMER1C|Other|Other	47027.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69923214-4	chr3	69922675	69923675	+	955.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	-63281.0	NM_001286959	66183.0	Mm.45481	NM_133675	ENSMUSG00000043461	Sptssb	1110032A04Rik|ADMP|Sssptb	serine palmitoyltransferase, small subunit B	protein-coding	3.0	6.5	1.0	0.0	1.0	0.5
Merged-chr9-53693917-4	chr9	53693412	53694412	+	955.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175562, intron 1 of 1)	ORR1B1|LTR|ERVL-MaLR	12320.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-6624748-4	chr1	6624233	6625233	+	955.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001244693, intron 2 of 22)	MTD|LTR|ERVL-MaLR	-105318.0	NR_045189	240690.0	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150672933-4	chr2	150672417	150673417	+	955.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4677.0	NM_080575	68738.0	Mm.7044	NM_080575	ENSMUSG00000027452	Acss1	1110032O15Rik|AI788978|Acas2|Acas2l|AceCS2	acyl-CoA synthetase short-chain family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-56689933-4	chr14	56689419	56690419	+	955.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153396, intron 9 of 12)	intron (NR_153396, intron 9 of 12)	11081.0	NR_046209	100503823.0	Mm.474486	NR_046209		Gm16973	-	predicted gene, 16973	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-34714400-3	chr12	34713908	34714908	+	955.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-185519.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	77.0	142.0	87.0	67.5	142.5	115.5
Merged-chr4-129623938-4	chr4	129623449	129624449	+	955.270874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025455)	promoter-TSS (NM_025455)	-41.0	NM_025455	66264.0	Mm.383215	NM_025455	ENSMUSG00000028795	Ccdc28b	1110002E08Rik|1810010N17Rik	coiled coil domain containing 28B	protein-coding	71.5	163.0	116.0	76.0	152.5	73.0
Merged-chr11-70490393-4	chr11	70489876	70490876	+	955.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	-14898.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51853698-6	chr13	51853283	51854283	+	955.255554	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7108.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45221760-4	chr9	45221268	45222268	+	955.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 1 of 4)	intron (NM_001198971, intron 1 of 4)	-17693.0	NM_145403	214523.0	Mm.436756	NM_145403	ENSMUSG00000032091	Tmprss4	mCAP2	transmembrane protease, serine 4	protein-coding	3.0	30.5	19.5	4.5	26.0	5.0
Merged-chr2-166676649-4	chr2	166676157	166677157	+	955.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	37175.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-23969091-4	chr5	23968580	23969580	+	955.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053090, intron 10 of 10)	intron (NM_053090, intron 10 of 10)	61232.0	NM_001310471	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	8.5	18.0	18.5	13.0	17.5	7.5
Merged-chr12-85963881-4	chr12	85963370	85964370	+	955.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	115171.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128779092-4	chr10	128778597	128779597	+	955.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11813.0	NM_001164197	58223.0	Mm.131266	NM_021412	ENSMUSG00000025355	Mmp19	-	matrix metallopeptidase 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-118360046-4	chr4	118359526	118360526	+	955.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026601)	promoter-TSS (NM_026601)	27.0	NR_003946	68180.0	Mm.193212	NM_026601	ENSMUSG00000006395	Hyi	2700033B16Rik|6430559E15Rik|HT036	hydroxypyruvate isomerase (putative)	protein-coding	30.5	88.5	38.0	123.5	190.5	247.5
Merged-chr8-126542280-3	chr8	126541824	126542824	+	955.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51112.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.0	10.5	0.0	0.0	10.5	0.5
Merged-chr11-89021688-3	chr11	89021223	89022223	+	955.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	22320.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	115.5	261.5	192.5	121.5	292.0	239.5
Merged-chr14-103550637-4	chr14	103550134	103551134	+	955.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022886, intron 8 of 30)	intron (NM_022886, intron 8 of 30)	37293.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8889452-4	chr12	8888958	8889958	+	955.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31849.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	0.0	0.5	0.0	0.0	0.5	0.0
Merged-chr7-126725853-4	chr7	126725352	126726352	+	955.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-21036.0	NM_009898	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-102889109-4	chr13	102888601	102889601	+	955.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	128846.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-126613746-4	chr3	126613250	126614250	+	955.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	16799.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	89.0	140.0	141.0	55.5	128.5	79.5
Merged-chr9-60602174-4	chr9	60601693	60602693	+	955.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311095, intron 12 of 15)	intron (NM_001311095, intron 12 of 15)	-56311.0	NR_040463	100504561.0	Mm.410770	NR_040463	ENSMUSG00000111761	9230112J17Rik	-	RIKEN cDNA 9230112J17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72812480-4	chr5	72811978	72812978	+	955.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	55970.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75905647-4	chr15	75905160	75906160	+	955.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029663, intron 2 of 9)	intron (NM_029663, intron 2 of 9)	3684.0	NM_001285433	66656.0	Mm.258927	NM_023240	ENSMUSG00000055762	Eef1d	EF-1-delta	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102973084-7	chr2	102972569	102973569	+	955.1825560000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71404.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	1.5	12.5	6.5	3.5	15.5	2.0
Merged-chr11-121848076-4	chr11	121847548	121848548	+	955.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17830.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43668829-3	chr7	43668316	43669316	+	955.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-3215.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-67359269-4	chr14	67358767	67359767	+	955.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045961, intron 3 of 5)	intron (NR_045961, intron 3 of 5)	38475.0	NR_045961	73977.0	Mm.414915	NR_045961	ENSMUSG00000093472	4930438E09Rik	-	RIKEN cDNA 4930438E09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-12044757-4	chr5	12044257	12045257	+	955.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	126714.0	NM_001177510	545732.0	Mm.389066	NM_001177510	ENSMUSG00000067848	4933402N22Rik	-	RIKEN cDNA 4933402N22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52990595-2	chr2	52990095	52991095	+	955.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	132727.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15803652-4	chr17	15803171	15804171	+	955.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22915.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	12.0	15.0	11.5	18.0	10.0	10.0
Merged-chr19-3686757-4	chr19	3686245	3687245	+	955.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008513)	promoter-TSS (NM_008513)	-181.0	NM_008513	16973.0	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85013428-4	chr8	85012929	85013929	+	955.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_052011, exon 2 of 10)	non-coding (NR_052011, exon 2 of 10)	979.0	NM_001130194	212989.0	Mm.215154	NM_001130194	ENSMUSG00000052819	Best2	Vmd2l1	bestrophin 2	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr1-119895185-3	chr1	119894691	119895691	+	955.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17977.0	NM_175106	66343.0	Mm.49942	NM_175106	ENSMUSG00000036975	Tmem177	2300008B03Rik	transmembrane protein 177	protein-coding	1.0	3.0	0.0	0.0	0.0	0.0
Merged-chr11-94162243-2	chr11	94161743	94162743	+	955.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49211.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	1.0	0.0	1.5	1.0	0.0	1.5
Merged-chr17-80175187-4	chr17	80174684	80175684	+	955.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176963, intron 4 of 6)	intron (NM_176963, intron 4 of 6)	32121.0	NM_001195486	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88698493-4	chr1	88697972	88698972	+	955.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177305, exon 1 of 1)	3' UTR (NM_177305, exon 1 of 1)	3719.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11343294-4	chr19	11342785	11343785	+	955.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR78|LTR|ERV1	-7139.0	NM_027836	109225.0	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144679394-4	chr3	144678882	144679882	+	955.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	40953.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	1.0	3.0	11.0	10.5	33.0	18.0
Merged-chr5-117373619-4	chr5	117373103	117374103	+	955.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021539, intron 4 of 8)	intron (NM_021539, intron 4 of 8)	15420.0	NM_028128	72151.0	Mm.27997	NM_028128	ENSMUSG00000029363	Rfc5	2610020K06Rik|2610209F07Rik|36.5kDa|36kDa|Recc5	replication factor C (activator 1) 5	protein-coding	7.5	28.0	6.5	1.5	9.0	11.0
Merged-chr14-64310063-4	chr14	64309546	64310546	+	955.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253714, intron 1 of 4)	intron (NM_001253714, intron 1 of 4)	106910.0	NM_001253716	110265.0	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30749931-4	chr13	30749441	30750441	+	955.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347508, intron 1 of 8)	intron (NM_001347508, intron 1 of 8)	708.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38679587-5	chr16	38679161	38680161	+	955.080017	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	33374.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3672136-4	chr8	3671661	3672661	+	955.0714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357661, intron 1 of 1)	intron (NM_001357661, intron 1 of 1)	230.0	NM_001357661	100503924.0	Mm.415621	NM_001357661	ENSMUSG00000089665	Fcor	2400009B08Rik	Foxo1 corepressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129928656-3	chr4	129928165	129929165	+	955.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22439.0	NR_045190	319894.0	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	0.0	3.5	0.0	3.0	1.5	0.5
Merged-chr3-30823667-3	chr3	30823173	30824173	+	955.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	30797.0	NM_001357528	69276.0	Mm.26017	NM_027016	ENSMUSG00000027706	Sec62	3100002M17Rik|AI844545|AW545092|Dtrp1|HTP1|Tloc1	SEC62 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-121281043-4	chr7	121280555	121281555	+	955.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111241.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-97115708-4	chr9	97115216	97116216	+	955.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4675.0	NM_138756	192287.0	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52574408-4	chr13	52573848	52574848	+	955.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1123.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19669589-4	chr7	19669100	19670100	+	955.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4320.0	NM_001309795	11813.0	Mm.28394	NM_001277944	ENSMUSG00000002992	Apoc2	apo-CII|apoC-II	apolipoprotein C-II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50369632-4	chr11	50369152	50370152	+	955.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8067.0	NM_021510	59013.0	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54690557-2	chr13	54690057	54691057	+	955.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027396, intron 1 of 10)	intron (NR_027396, intron 1 of 10)	-2357.0	NM_001146027	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25091956-1	chr12	25091456	25092456	+	955.0	f0_balb.idr	Intergenic	URR1A|DNA|hAT-Charlie	4136.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	11.0	1.0	8.0	0.5	16.0	5.5
Merged-chr13-59780186-2	chr13	59779686	59780686	+	955.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153538, intron 26 of 27)	(T)n|Simple_repeat|Simple_repeat	10220.0	NR_015349	13996.0	Mm.490435	NR_015349		Etohd2	AW491659	ethanol decreased 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128738876-2	chr2	128738376	128739376	+	955.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 4 of 18)	intron (NM_008587, intron 4 of 18)	39961.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	18.0	42.5	15.5	14.0	34.5	19.5
Merged-chr15-6578803-2	chr15	6578303	6579303	+	955.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1044.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125001787-2	chr6	125001287	125002287	+	955.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145926, intron 5 of 5)	intron (NM_001145926, intron 5 of 5)	3177.0	NM_001145926	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30283155-2	chr16	30282655	30283655	+	955.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028973)	promoter-TSS (NM_028973)	99.0	NM_028973	74488.0	Mm.290677	NM_028973	ENSMUSG00000052316	Lrrc15	5430427N11Rik|LIB	leucine rich repeat containing 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130004371-2	chr5	130003871	130004871	+	955.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1322.0	NM_001357027	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr14-45212659-2	chr14	45212159	45213159	+	955.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310534, intron 3 of 20)	B1_Mus2|SINE|Alu	6766.0	NM_172597	70561.0	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62215715-2	chr10	62215215	62216215	+	955.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 1 of 7)	intron (NM_197996, intron 1 of 7)	15503.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43256365-4	chr4	43255876	43256876	+	955.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081413, intron 29 of 39)	intron (NM_001081413, intron 29 of 39)	-10783.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	14.5	37.0	27.0	20.0	46.5	41.5
Merged-chr15-27661833-2	chr15	27661333	27662333	+	955.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 4 of 6)	L1ME1|LINE|L1	19709.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3415553-2	chr7	3415053	3416053	+	955.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133190)	TTS (NM_133190)	487.0	NR_128566	104795667.0		NR_128566	ENSMUSG00000094210	Gm23450	Mir935|mmu-mir-935	predicted gene, 23450	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52828026-2	chr13	52827526	52828526	+	955.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-70821.0	NR_027893	105404.0	Mm.184173	NR_027893		BB123696	-	expressed sequence BB123696	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75053186-4	chr11	75052684	75053684	+	955.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 12 of 18)	intron (NM_001002764, intron 12 of 18)	12807.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76856207-2	chr11	76855707	76856707	+	955.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-9199.0	NM_007754	12874.0	Mm.276736	NM_007754	ENSMUSG00000020841	Cpd	AA960140|AW322530|D830034L15Rik	carboxypeptidase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90771979-1	chr5	90771479	90772479	+	955.0	f1_balb.idr	promoter-TSS (NM_019932)	promoter-TSS (NM_019932)	-456.0	NM_019932	56744.0	Mm.332490	NM_019932	ENSMUSG00000029373	Pf4	Cxcl4|Scyb4	platelet factor 4	protein-coding	108.5	137.0	109.5	68.0	122.0	105.0
Merged-chr8-115487949-2	chr8	115487449	115488449	+	955.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	218945.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56998825-2	chr17	56998325	56999325	+	955.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008954)	TTS (NM_008954)	1280.0	NM_008954	19197.0	Mm.86487	NM_008954	ENSMUSG00000002664	Pspn	PSP	persephin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19570955-4	chr10	19570472	19571472	+	955.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-20977.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	37.5	62.0	61.0	31.5	82.5	65.5
Merged-chr8-92852742-2	chr8	92852242	92853242	+	955.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008610, exon 13 of 13)	3' UTR (NM_008610, exon 13 of 13)	-2591.0	NM_173014	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	62.0	139.0	93.5	39.5	87.5	88.0
Merged-chr3-105686538-1	chr3	105686038	105687038	+	955.0	f1_c57bl6.idr	intron (NM_017397, intron 2 of 10)	intron (NM_017397, intron 2 of 10)	1033.0	NM_017397	53975.0	Mm.272826	NM_017397	ENSMUSG00000027905	Ddx20	GEMIN3|dp103	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	protein-coding	11.0	8.0	17.0	7.0	5.0	13.5
Merged-chr5-66134879-2	chr5	66134379	66135379	+	955.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	16099.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.0	1.5	8.5	0.0	3.5	1.5
Merged-chr10-128271016-2	chr10	128270516	128271516	+	955.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133997)	TTS (NM_133997)	518.0	NM_019963	20847.0	Mm.293120	NM_019963	ENSMUSG00000040033	Stat2	1600010G07Rik|AW496480	signal transducer and activator of transcription 2	protein-coding	24.5	38.0	26.5	14.5	45.5	18.5
Merged-chr1-153952153-1	chr1	153951653	153952653	+	955.0	f0_balb.idr	Intergenic	MLTR14|LTR|ERV1	52224.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16929803-2	chr7	16929303	16930303	+	955.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-5771.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11772478-2	chr2	11771978	11772978	+	955.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348235, intron 1 of 20)	intron (NM_001348235, intron 1 of 20)	5107.0	NM_001348234	50755.0	Mm.24088	NM_015792	ENSMUSG00000058594	Fbxo18	AU015756|Fbh1|Fbx18	F-box protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82047427-6	chr15	82046904	82047904	+	955.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011482, intron 1 of 2)	CpG	194.0	NM_011482	20826.0	Mm.299312	NM_011482	ENSMUSG00000063480	Snu13	FA-1|Fta1|Nhp2l1|Ssfa1	SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5)	protein-coding	118.5	369.0	324.0	99.5	250.5	155.0
Merged-chr11-69272575-2	chr11	69272075	69273075	+	955.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35553.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150048036-2	chr4	150047530	150048530	+	955.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20424.0	NR_029751	723848.0		NR_029751	ENSMUSG00000065493	Mir34a	Mirn34a|mir-34a|mmu-mir-34a	microRNA 34a	ncRNA	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-103337294-3	chr12	103336788	103337788	+	955.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 3 of 9)	intron (NM_023049, intron 3 of 9)	18713.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111550389-4	chr8	111549935	111550935	+	954.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168623, intron 1 of 4)	intron (NM_001168623, intron 1 of 4)	12092.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	11.0	15.5	22.5	25.5	36.5	17.5
Merged-chr19-37180704-4	chr19	37180169	37181169	+	954.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045329, intron 2 of 2)	intron (NR_045329, intron 2 of 2)	-4606.0	NM_001290826	208922.0	Mm.391176	NM_198300	ENSMUSG00000039652	Cpeb3	4831444O18Rik|CPE-BP3|mKIAA0940	cytoplasmic polyadenylation element binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6562518-4	chr11	6561960	6562960	+	954.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190344, intron 2 of 9)	intron (NM_001190344, intron 2 of 9)	2277.0	NM_001190344	216527.0	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	24.0	52.0	29.5	23.0	49.0	36.5
Merged-chr19-12002374-4	chr19	12001898	12002898	+	954.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34342.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60217813-3	chr2	60217307	60218307	+	954.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020575, intron 1 of 9)	intron (NM_020575, intron 1 of 9)	7871.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-169918620-3	chr2	169918100	169919100	+	954.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	44587.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	10.0	19.0	5.0	4.0	2.5	3.0
Merged-chr9-9238999-4	chr9	9238502	9239502	+	954.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027823)	promoter-TSS (NM_027823)	11.0	NM_027823	71544.0	Mm.334955	NM_027823	ENSMUSG00000050730	Arhgap42	9030420J04Rik|BE136619	Rho GTPase activating protein 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128728610-4	chr4	128728100	128729100	+	954.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195083, intron 1 of 6)	intron (NM_001195083, intron 1 of 6)	1029.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	54.5	96.5	82.5	56.5	172.5	74.5
Merged-chr19-14596503-4	chr19	14596007	14597007	+	954.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302951, intron 2 of 19)	intron (NM_001302951, intron 2 of 19)	706.0	NM_001302951	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-75726531-3	chr12	75726059	75727059	+	954.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030750, intron 1 of 2)	intron (NM_030750, intron 1 of 2)	9170.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153174493-4	chr2	153174014	153175014	+	954.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	L1ME1|LINE|L1	13213.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72224641-4	chr5	72224162	72225162	+	954.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 1 of 22)	intron (NR_003966, intron 1 of 22)	21319.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69546952-2	chr11	69546452	69547452	+	954.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 1 of 85)	intron (NM_001081330, intron 1 of 85)	2156.0	NM_001081330	327954.0	Mm.247478	NM_177617	ENSMUSG00000005237	Dnah2	2900022L05Rik|4930564A01|D130094J20|D330014H01Rik|Dnahc2|Dnhd3	dynein, axonemal, heavy chain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80095088-2	chr7	80094508	80095508	+	954.900024	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173011, exon 11 of 11)	3' UTR (NM_173011, exon 11 of 11)	-19751.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-19843581-3	chr13	19843089	19844089	+	954.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19332.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	5.5	14.5	10.0	3.5	28.5	11.0
Merged-chr4-12021411-3	chr4	12020913	12021913	+	954.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54839.0	NR_040577	100503636.0	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54392725-4	chr14	54392229	54393229	+	954.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	RSINE1|SINE|B4	16743.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	6.5	11.0	27.0	6.5	9.5	40.0
Merged-chr7-30917416-4	chr7	30916914	30917914	+	954.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-2492.0	NM_010758	17136.0	Mm.241355	NM_010758	ENSMUSG00000036634	Mag	Gma|siglec-4a	myelin-associated glycoprotein	protein-coding	3.5	1.5	2.5	0.0	5.0	1.0
Merged-chr15-90305178-4	chr15	90304672	90305672	+	954.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48538.0	NR_155426	102640415.0	Mm.394352	NR_155426	ENSMUSG00000116204	Gm36480	-	predicted gene, 36480	ncRNA	0.5	6.5	4.0	11.5	1.5	8.5
Merged-chr11-86357418-4	chr11	86356907	86357907	+	954.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080931, intron 1 of 29)	CpG	118.0	NM_001080931	327987.0	Mm.341886	NM_001080931	ENSMUSG00000034297	Med13	1110067M05Rik|D030023K18|Thrap1|Trap240	mediator complex subunit 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-54358959-4	chr3	54358488	54359488	+	954.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2119.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	2.0	4.0	0.0	1.0	3.5	2.5
Merged-chr5-92349657-6	chr5	92349183	92350183	+	954.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021274)	promoter-TSS (NM_021274)	-794.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	133.5	347.0	183.5	75.0	208.5	122.0
Merged-chr11-50286570-4	chr11	50286071	50287071	+	954.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 1 of 4)	intron (NM_175334, intron 1 of 4)	5765.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-85489901-4	chr13	85489395	85490395	+	954.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-200409.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	16.0	34.0	15.5	1.5	24.5	13.5
Merged-chr2-166001578-2	chr2	166001078	166002078	+	954.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	8941.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	1.5	9.0	4.5	6.5	10.0	10.0
Merged-chr13-8645465-4	chr13	8644988	8645988	+	954.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110345, intron 3 of 10)	intron (NR_110345, intron 3 of 10)	225556.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-101542565-4	chr14	101542076	101543076	+	954.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	66615.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5145968-4	chr2	5145469	5146469	+	954.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028804, intron 2 of 2)	MTD|LTR|ERVL-MaLR	8193.0	NM_028804	74186.0	Mm.274715	NM_028804	ENSMUSG00000026676	Ccdc3	2310045O21Rik	coiled-coil domain containing 3	protein-coding	4.0	3.0	4.0	0.0	7.5	3.0
Merged-chr10-67620226-4	chr10	67619722	67620722	+	954.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-48263.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6442513-4	chr2	6442028	6443028	+	954.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001080548, exon 15 of 15)	3' UTR (NM_001080548, exon 15 of 15)	89792.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128635724-2	chr4	128635224	128636224	+	954.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17105.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	7.5	0.0	6.5	1.0	0.0	0.5
Merged-chr2-116922794-4	chr2	116922288	116923288	+	954.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22636.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-89228313-4	chr9	89227801	89228801	+	954.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359993, intron 2 of 2)	L1MB2|LINE|L1	16917.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	2.5	15.0	28.0	6.5	14.0	6.5
Merged-chr5-113787152-2	chr5	113786652	113787652	+	954.8000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13200.0	NM_146162	231633.0	Mm.41681	NM_146162	ENSMUSG00000054675	Tmem119	AW208946|BC025600|obif	transmembrane protein 119	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20879736-4	chr10	20879224	20880224	+	954.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72823.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	2.5	0.0	1.5	0.0	0.0	2.0
Merged-chr8-70868714-4	chr8	70868215	70869215	+	954.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026964, intron 4 of 4)	CpG	4775.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	1.5	15.5	5.0	2.0	22.5	20.5
Merged-chr4-56055275-4	chr4	56054775	56055775	+	954.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-522800.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78608990-4	chr15	78608485	78609485	+	954.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028195, intron 6 of 12)	MIRb|SINE|MIR	11938.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	21.0	45.0	82.5	17.0	76.0	71.5
Merged-chr2-120309413-4	chr2	120308899	120309899	+	954.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024145, intron 7 of 19)	intron (NM_001024145, intron 7 of 19)	4766.0	NM_001024145	271844.0	Mm.24880	NM_001024145	ENSMUSG00000046971	Pla2g4f	4732472I07Rik|Gm647|Pla2zeta	phospholipase A2, group IVF	protein-coding	1.5	5.5	6.5	1.5	5.5	6.5
Merged-chr5-96803264-4	chr5	96802760	96803760	+	954.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013470, intron 2 of 12)	intron (NM_013470, intron 2 of 12)	9875.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	39.0	54.0	47.5	53.0	88.5	72.5
Merged-chr1-36789612-4	chr1	36789106	36790106	+	954.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	10622.0	NM_001289612	22637.0	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153553716-4	chr1	153553222	153554222	+	954.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4008.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59867399-4	chr13	59866877	59867877	+	954.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44230.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr9-104234010-4	chr9	104233506	104234506	+	954.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 5 of 56)	intron (NM_001359740, intron 5 of 56)	28924.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-41072874-4	chr9	41072348	41073348	+	954.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	6658.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	41.5	73.0	61.0	13.5	41.5	57.5
Merged-chr17-35738030-4	chr17	35737528	35738528	+	954.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33429.0	NM_007584	12305.0	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	7.0	1.5	4.0	1.5	8.0	1.0
Merged-chr15-59520667-4	chr15	59520161	59521161	+	954.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-127993.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	4.5	0.0	3.0	6.5	5.5
Merged-chr9-114785551-4	chr9	114785060	114786060	+	954.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	-3567.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	21.5	88.0	50.5	13.0	29.5	37.0
Merged-chr2-75638341-4	chr2	75637842	75638842	+	954.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR6_Mm|LTR|ERV1	-20917.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	3.5	14.0	12.0	0.0	0.0	0.0
Merged-chr9-95170295-4	chr9	95169801	95170801	+	954.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 14 of 15)	intron (NM_177909, intron 14 of 15)	236969.0	NM_018763	54371.0	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	2.5	8.0	5.0	1.5	10.5	3.0
Merged-chr12-117480392-2	chr12	117479895	117480895	+	954.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36084.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	9.0	13.0	20.5	9.0	13.0	19.5
Merged-chr11-94550348-4	chr11	94549846	94550846	+	954.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1139.0	NM_001013381	237926.0	Mm.342275	NM_001013381	ENSMUSG00000039096	Rsad1	B430319G23|BC056485	radical S-adenosyl methionine domain containing 1	protein-coding	0.0	0.0	3.5	5.0	0.5	0.0
Merged-chr10-80747589-4	chr10	80747093	80748093	+	954.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5318.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101085455-2	chr11	101084955	101085955	+	954.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_155015, intron 5 of 8)	intron (NR_155015, intron 5 of 8)	-1835.0	NM_011550	21428.0	Mm.628	NM_011550	ENSMUSG00000017801	Mlx	Tcfl4|Tf4|bHLHd13	MAX-like protein X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128546485-4	chr10	128545974	128546974	+	954.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134003, intron 2 of 2)	intron (NM_134003, intron 2 of 2)	1270.0	NM_134003	103284.0	Mm.68289	NM_134003	ENSMUSG00000039810	Zc3h10	AI790326	zinc finger CCCH type containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35752349-2	chr17	35751807	35752807	+	954.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20143.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	34.5	59.5	57.0	11.5	28.0	28.5
Merged-chr13-73467983-3	chr13	73467469	73468469	+	954.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145376, intron 1 of 13)	intron (NM_145376, intron 1 of 13)	586.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-60666027-4	chr19	60665546	60666546	+	954.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER58A|DNA|hAT-Charlie	-85023.0	NM_001172096	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	7.0	4.5	5.0	16.0	19.0	2.5
Merged-chr6-29252321-4	chr6	29251846	29252846	+	954.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20142.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-107597775-4	chr7	107597286	107598286	+	954.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008905, intron 1 of 24)	intron (NM_008905, intron 1 of 24)	2735.0	NM_008905	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-32588169-4	chr6	32587656	32588656	+	954.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175750)	promoter-TSS (NM_175750)	36.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-68976230-4	chr3	68975748	68976748	+	954.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026641, intron 5 of 19)	intron (NM_026641, intron 5 of 19)	28322.0	NM_026641	68259.0	Mm.389451	NM_026641	ENSMUSG00000027778	Ift80	4921524P20Rik|Wdr56|mKIAA1374	intraflagellar transport 80	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84549301-4	chr10	84548803	84549803	+	954.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040658, exon 3 of 4)	non-coding (NR_040658, exon 3 of 4)	4035.0	NR_040658	442847.0	Mm.128292	NR_040658	ENSMUSG00000097076	Platr7	C330046G13Rik	pluripotency associated transcript 7	ncRNA	28.5	28.0	20.0	28.5	28.0	20.0
Merged-chr16-48865196-4	chr16	48864674	48865674	+	954.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7434.0	NM_181596	245195.0	Mm.231288	NM_181596	ENSMUSG00000022651	Retnlg	Fizz3|Relmg|Xcp1	resistin like gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47529818-3	chr9	47529314	47530314	+	954.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310841)	promoter-TSS (NM_001310841)	-356.0	NM_001310841	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	31.0	33.5	56.0	19.0	37.5	35.0
Merged-chr2-165858230-3	chr2	165857729	165858729	+	954.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252585)	promoter-TSS (NM_001252585)	-56.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101840596-3	chr5	101840084	101841084	+	954.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 66 of 66)	L1M2|LINE|L1	75454.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.0	2.0	0.0	0.0	2.0	0.0
Merged-chr2-28619089-3	chr2	28618586	28619586	+	954.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160406, intron 1 of 6)	intron (NM_001160406, intron 1 of 6)	2896.0	NM_008114	14582.0	Mm.373385	NM_008114	ENSMUSG00000026815	Gfi1b	Gfi-1B	growth factor independent 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120443439-4	chr1	120442918	120443918	+	954.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	61606.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	1.0	1.5	2.5	1.0	1.5	2.5
Merged-chr6-100163943-4	chr6	100163464	100164464	+	954.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	123394.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86183672-3	chr15	86183187	86184187	+	954.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-2041.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45091377-3	chr7	45090930	45091930	+	954.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355045, intron 2 of 6)	intron (NM_001355045, intron 2 of 6)	783.0	NM_026555	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	2.0	2.5	11.0	2.0	2.5	11.0
Merged-chr16-17276812-3	chr16	17276342	17277342	+	954.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177473, exon 3 of 10)	exon (NM_177473, exon 3 of 10)	542.0	NM_177473	224019.0	Mm.246388	NM_177473	ENSMUSG00000055692	Tmem191c	4933405M22Rik|D16Bwg1494e|MNCb-4137	transmembrane protein 191C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125353069-4	chr6	125352580	125353580	+	954.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011609, intron 1 of 9)	intron (NM_011609, intron 1 of 9)	3357.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138656884-2	chr5	138656352	138657352	+	954.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33993.0	NM_183025	243308.0	Mm.36612	NM_183025	ENSMUSG00000056014	A430033K04Rik	C86988	RIKEN cDNA A430033K04 gene	protein-coding	2.0	0.0	1.5	5.5	2.0	1.5
Merged-chr10-31609555-3	chr10	31609102	31610102	+	954.6587519999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001146349, exon 1 of 6)	5' UTR (NM_001146349, exon 1 of 6)	123.0	NM_001146349	268291.0	Mm.295212	NM_001146349	ENSMUSG00000063760	Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157081987-6	chr2	157081448	157082448	+	954.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2683.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8795552-4	chr10	8795043	8796043	+	954.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 4 of 19)	intron (NM_175155, intron 4 of 19)	90527.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116877335-4	chr4	116876910	116877910	+	954.642822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029912)	promoter-TSS (NM_001029912)	8.0	NM_001029912	74464.0	Mm.218946	NM_001029912	ENSMUSG00000033948	Zswim5	4933426E21Rik|AI503093|mKIAA1511	zinc finger SWIM-type containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31429864-4	chr16	31429340	31430340	+	954.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152205)	promoter-TSS (NR_152205)	-64.0	NR_152205	100047123.0	Mm.466711	NR_152205		Gm15743	-	predicted gene 15743	ncRNA	0.0	0.0	2.0	1.5	6.5	2.0
Merged-chr7-28808398-4	chr7	28807903	28808903	+	954.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2487.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3711885-4	chr8	3711386	3712386	+	954.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8765.0	NM_029465	75863.0	Mm.109183	NM_029465	ENSMUSG00000074491	Clec4g	4930572L20Rik	C-type lectin domain family 4, member g	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-83564409-3	chr9	83563907	83564907	+	954.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	16069.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	10.5	21.0	16.0	10.5	24.5	18.5
Merged-chr5-139483669-4	chr5	139483159	139484159	+	954.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159908, intron 1 of 6)	intron (NM_001159908, intron 1 of 6)	832.0	NM_133349	100494.0	Mm.24521	NM_133349	ENSMUSG00000053581	Zfand2a	AA407930|AU016206|Airap	zinc finger, AN1-type domain 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-89581150-7	chr1	89580665	89581665	+	954.595215	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	CpG	102727.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-16637199-4	chr10	16636704	16637704	+	954.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	458578.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124721027-2	chr6	124720527	124721527	+	954.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077705, intron 15 of 15)	intron (NM_001077705, intron 15 of 15)	-2637.0	NR_029792	723944.0		NR_029792	ENSMUSG00000065462	Mir200c	Mirn200c|mir-200c	microRNA 200c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105171575-4	chr8	105171096	105172096	+	954.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161456, intron 2 of 4)	CpG-14413	922.0	NM_001161458	12400.0	Mm.2018	NM_022309	ENSMUSG00000031885	Cbfb	AI893578|PEA2|PEBP2b|Pebp2|Pebpb2	core binding factor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11544559-4	chr2	11544065	11545065	+	954.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	9364.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-28487046-4	chr6	28486548	28487548	+	954.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 1 of 23)	intron (NM_019776, intron 1 of 23)	6700.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-57357192-4	chr14	57356686	57357686	+	954.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030004, intron 3 of 7)	intron (NM_030004, intron 3 of 7)	41297.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-80855225-4	chr5	80854710	80855710	+	954.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-165361.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.0	0.0	2.0	1.0	3.0	1.0
Merged-chr8-10596463-4	chr8	10595930	10596930	+	954.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001319151, intron 33 of 34)	intron (NM_001319151, intron 33 of 34)	286024.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-108405936-4	chr4	108405447	108406447	+	954.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024198, intron 1 of 2)	intron (NM_024198, intron 1 of 2)	766.0	NM_024198	67305.0	Mm.20164	NM_024198	ENSMUSG00000028597	Gpx7	3110050F08Rik|AI327032|GPX6	glutathione peroxidase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8359616-3	chr12	8359061	8360061	+	954.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	46128.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	4.5	11.0	8.5	3.5	13.0	2.0
Merged-chr8-72320927-4	chr8	72320438	72321438	+	954.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008452, exon 3 of 3)	3' UTR (NM_008452, exon 3 of 3)	1876.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	49.0	179.0	102.0	81.5	197.0	136.0
Merged-chr2-117842561-4	chr2	117842075	117843075	+	954.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040631, intron 2 of 5)	intron (NR_040631, intron 2 of 5)	20647.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123343623-4	chr8	123343095	123344095	+	954.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172287, intron 1 of 14)	intron (NM_172287, intron 1 of 14)	10882.0	NM_172287	234857.0	Mm.150200	NM_172287	ENSMUSG00000010154	Spire2	BC026502|Spir-2|Spir2	spire type actin nucleation factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-42978583-4	chr5	42978080	42979080	+	954.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-254883.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21446963-4	chr13	21446470	21447470	+	954.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_151504)	TTS (NR_151504)	1810.0	NR_035441	100316752.0		NR_035441	ENSMUSG00000084590	Mir1896	Mirn1896|mmu-mir-1896	microRNA 1896	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111083518-4	chr10	111083034	111084034	+	954.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73468.0	NM_172554	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	0.0	8.5	4.0	0.0	0.5	3.5
Merged-chr10-37194312-5	chr10	37193859	37194859	+	954.507141	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55433.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30786291-3	chr13	30785790	30786790	+	954.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37057.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69327722-2	chr11	69327222	69328222	+	954.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010599, intron 1 of 13)	intron (NM_010599, intron 1 of 13)	1464.0	NM_010599	16499.0	Mm.232472	NM_010599	ENSMUSG00000018470	Kcnab3	C330022D06Rik|Kcnab4|mKv(beta)4	potassium voltage-gated channel, shaker-related subfamily, beta member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51456638-4	chr10	51456137	51457137	+	954.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23975.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131501775-3	chr1	131501268	131502268	+	954.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	25593.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0.0	2.0	0.0	0.0	2.0	1.0
Merged-chr5-142931303-2	chr5	142930803	142931803	+	954.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24549.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87671586-2	chr16	87671086	87672086	+	954.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27368.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-65111151-4	chr1	65110613	65111613	+	954.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175293, intron 5 of 7)	RLTR33|LTR|ERVK	-7750.0	NM_007774	12964.0	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-55238322-4	chr18	55237806	55238806	+	954.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-245715.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	3.0	14.0	0.5	2.0	3.0	5.5
Merged-chr8-27043465-4	chr8	27042989	27043989	+	954.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039077, intron 1 of 4)	intron (NM_001039077, intron 1 of 4)	934.0	NM_054057	114863.0	Mm.277501	NM_054057	ENSMUSG00000031485	Plpbp	1700024N20Rik|2200002F22Rik|Prosc	pyridoxal phosphate binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127742089-3	chr10	127741604	127742604	+	954.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198035, exon 2 of 2)	exon (NM_198035, exon 2 of 2)	2566.0	NM_198035	320080.0	Mm.27258	NM_198035	ENSMUSG00000044617	Zbtb39	7030401O21Rik|mKIAA0352	zinc finger and BTB domain containing 39	protein-coding	2.0	6.5	7.0	0.0	1.0	11.0
Merged-chr1-191292577-2	chr1	191292077	191293077	+	954.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25541.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80997384-4	chr17	80996894	80997894	+	954.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026516, intron 3 of 3)	intron (NM_026516, intron 3 of 3)	52762.0	NM_026516	68027.0	Mm.357108	NM_026516	ENSMUSG00000024245	Tmem178	2810417M05Rik|Tmem178a	transmembrane protein 178	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155831532-2	chr2	155831032	155832032	+	954.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_027788, exon 2 of 4)	exon (NM_027788, exon 2 of 4)	3322.0	NM_027788	71405.0	Mm.260918	NM_027788	ENSMUSG00000074647	Fam83c	5530400B04Rik	family with sequence similarity 83, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	6.5
Merged-chr16-13831746-2	chr16	13831246	13832246	+	954.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346109, intron 5 of 7)	intron (NM_001346109, intron 5 of 7)	12495.0	NM_001346111	18203.0	Mm.380410	NM_010946	ENSMUSG00000022681	Ntan1	PNAA|PNAD	N-terminal Asn amidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97590907-4	chr15	97590409	97591409	+	954.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114913.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121766160-3	chr3	121765668	121766668	+	954.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008991, intron 20 of 22)	intron (NM_008991, intron 20 of 22)	42631.0	NM_010171	14066.0	Mm.273188	NM_010171	ENSMUSG00000028128	F3	AA409063|CD142|Cf-3|Cf3|TF	coagulation factor III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80489934-3	chr11	80489435	80490435	+	954.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177390, intron 21 of 21)	intron (NM_177390, intron 21 of 21)	12912.0	NM_009871	12569.0	Mm.142275	NM_009871	ENSMUSG00000048895	Cdk5r1	Cdk5r|D11Bwg0379e|p25|p35	cyclin-dependent kinase 5, regulatory subunit 1 (p35)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-58160709-4	chr18	58160224	58161224	+	954.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010181, intron 5 of 64)	intron (NM_010181, intron 5 of 64)	49202.0	NM_010181	14119.0	Mm.20271	NM_010181	ENSMUSG00000024598	Fbn2	BC063774|Fib-2|mKIAA4226|sne|sy	fibrillin 2	protein-coding	11.5	8.0	15.5	6.5	6.0	13.5
Merged-chr6-56608396-3	chr6	56607885	56608885	+	954.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96314.0	NM_025520	66373.0	Mm.25642	NM_025520	ENSMUSG00000091625	Lsm5	2010208O10Rik|2310034K10Rik	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-52395473-2	chr11	52394973	52395973	+	954.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153117)	promoter-TSS (NM_153117)	-955.0	NM_153117	213673.0	Mm.291979	NM_153117	ENSMUSG00000036275	9530068E07Rik	C85061|Kct2	RIKEN cDNA 9530068E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-84545375-3	chr4	84544889	84545889	+	954.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172870, intron 2 of 5)	CpG	129697.0	NM_172870	242509.0	Mm.190774	NM_172870	ENSMUSG00000028487	Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103018817-2	chr3	103018317	103019317	+	954.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-1729.0	NM_001310693	229663.0	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44274665-2	chr10	44274165	44275165	+	954.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358596, intron 1 of 6)	B1F|SINE|Alu	6326.0	NM_001358596	11793.0	Mm.22264	NM_053069	ENSMUSG00000038160	Atg5	2010107M05Rik|3110067M24Rik|AW319544|Apg5l|Atg5l|C88337|Paddy	autophagy related 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31292562-2	chr5	31292062	31293062	+	954.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_022424, exon 7 of 7)	3' UTR (NM_022424, exon 7 of 7)	-1448.0	NM_026298	67661.0	Mm.293023	NM_026298	ENSMUSG00000038564	Ift172	4930553F24Rik|Slb|avc1|wim	intraflagellar transport 172	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140609759-4	chr5	140609274	140610274	+	954.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008494, intron 1 of 7)	intron (NM_008494, intron 1 of 7)	2433.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-12497980-2	chr4	12497480	12498480	+	954.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-325965.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128570025-2	chr10	128569525	128570525	+	954.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010153, intron 27 of 27)	intron (NM_010153, intron 27 of 27)	-4091.0	NM_011119	18813.0	Mm.4742	NM_011119	ENSMUSG00000025364	Pa2g4	38kDa|AA672939|Ebp1|Plfap	proliferation-associated 2G4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32874445-2	chr2	32873945	32874945	+	954.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-1689.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-150674853-2	chr5	150674353	150675353	+	954.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175310, intron 1 of 34)	intron (NM_175310, intron 1 of 34)	1026.0	NM_001346503	100710.0	Mm.32959	NM_175310	ENSMUSG00000034021	Pds5b	AI646570|AS3|AW212954|Aprin|Tg(Wap-ERBB2)229Wzw|WAP-Her-2|mKIAA0979	PDS5 cohesin associated factor B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-84163775-4	chr7	84163267	84164267	+	954.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11874.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-174086533-4	chr2	174086023	174087023	+	954.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102424, intron 2 of 8)	intron (NM_001102424, intron 2 of 8)	9472.0	NM_001102423	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-87368271-4	chr4	87367792	87368792	+	954.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137752.0	NM_172426	76376.0	Mm.490487	NM_172426	ENSMUSG00000037996	Slc24a2	2810021B17Rik|6330417K15Rik|AI847460|Nckx2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80011683-4	chr7	80011163	80012163	+	954.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-13151.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75820215-4	chr18	75819704	75820704	+	954.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145356)	promoter-TSS (NM_145356)	26.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr4-24597141-4	chr4	24596597	24597597	+	954.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149739, intron 22 of 24)	intron (NR_149739, intron 22 of 24)	100646.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	2.0	1.0	3.0	2.5	4.5	3.0
Merged-chr11-34048886-5	chr11	34048491	34049491	+	954.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 1 of 20)	intron (NM_010696, intron 1 of 20)	2063.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14233136-4	chr2	14232623	14233623	+	954.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 1 of 29)	L2c|LINE|L2	3709.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25790830-3	chr14	25790326	25791326	+	954.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21970.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-115924545-3	chr3	115924046	115925046	+	954.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027193, intron 5 of 7)	intron (NM_027193, intron 5 of 7)	36363.0	NM_027193	69740.0	Mm.5915	NM_027193	ENSMUSG00000033554	Dph5	2410012M04Rik|AU045680|C80186	diphthamide biosynthesis 5	protein-coding	6.0	8.0	12.5	7.5	50.5	33.0
Merged-chr4-97778482-6	chr4	97778003	97779003	+	954.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 1 of 10)	CpG	877.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20307789-3	chr14	20307284	20308284	+	954.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001359868, exon 6 of 10)	exon (NM_001359868, exon 6 of 10)	13094.0	NR_153364	67725.0	Mm.317636	NM_026341	ENSMUSG00000021809	Nudt13	4933433B15Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-108157977-4	chr10	108157460	108158460	+	954.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR1a|LTR|Gypsy	-4440.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29530363-4	chr6	29529937	29530937	+	954.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252382, intron 1 of 8)	intron (NM_001252382, intron 1 of 8)	1155.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106648513-4	chr11	106647931	106648931	+	954.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35501.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104402430-4	chr9	104401926	104402926	+	954.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23687.0	NR_035516	100316725.0		NR_035516	ENSMUSG00000089406	Mir2136	mmu-mir-2136	microRNA 2136	ncRNA	5.5	0.0	5.0	10.0	4.0	5.5
Merged-chr18-60523481-4	chr18	60522986	60523986	+	954.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2668.0	NM_026302	67665.0	Mm.272801	NM_026302	ENSMUSG00000024603	Dctn4	1110001K06Rik|4930547K17Rik|C130039E17Rik|p62	dynactin 4	protein-coding	36.5	94.5	81.5	95.5	206.0	108.5
Merged-chr4-127148033-4	chr4	127147554	127148554	+	954.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21150.0	NM_198618	242667.0	Mm.331885	NM_198618	ENSMUSG00000042388	Dlgap3	BC058433|DAP-3|DAP3|Prpl8|Sapap3	DLG associated protein 3	protein-coding	0.0	1.5	3.0	0.0	1.5	3.0
Merged-chr9-118677498-2	chr9	118676998	118677998	+	954.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 11 of 27)	intron (NM_133721, intron 11 of 27)	-34194.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	1.5	7.5	1.0	1.0
Merged-chr2-151974306-4	chr2	151973803	151974803	+	954.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289151)	promoter-TSS (NM_001289151)	-322.0	NM_028666	73847.0	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53439111-4	chr4	53438619	53439619	+	954.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1294.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	10.0	19.0	6.0	26.5	37.5	14.0
Merged-chr11-22969686-4	chr11	22969199	22970199	+	954.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144514, intron 1 of 2)	intron (NM_144514, intron 1 of 2)	-2306.0	NM_011663	22183.0	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	0.0	0.0	0.0	3.5	5.5	0.0
Merged-chr6-73059936-4	chr6	73059419	73060419	+	954.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164669, intron 61 of 76)	MTEa|LTR|ERVL-MaLR	-101171.0	NM_001190327	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-58040267-4	chr4	58039754	58040754	+	954.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31130.0	NM_026132	67402.0	Mm.87357	NM_026132	ENSMUSG00000038709	Txndc8	4930429J24Rik|Sptrx-3|Sptrx3|Trx6	thioredoxin domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132018363-4	chr2	132017852	132018852	+	954.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175445, intron 1 of 10)	intron (NM_175445, intron 1 of 10)	11636.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100931747-4	chr11	100931241	100932241	+	954.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_213660, intron 1 of 23)	intron (NM_213660, intron 1 of 23)	7799.0	NM_213660	20848.0	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61498400-4	chr14	61497910	61498910	+	954.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045714, intron 2 of 2)	intron (NR_045714, intron 2 of 2)	5722.0	NR_045714	75349.0	Mm.233613	NR_045714	ENSMUSG00000115656	4930556J02Rik	-	RIKEN cDNA 4930556J02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122408644-4	chr2	122408113	122409113	+	954.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-32207.0	NM_172980	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	67.5	162.0	92.0	69.5	150.5	104.5
Merged-chr6-57766251-2	chr6	57765751	57766751	+	954.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 3 of 4)	Lx5c|LINE|L1	58874.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-80722851-4	chr1	80722359	80723359	+	954.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	35694.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91788694-2	chr12	91788194	91789194	+	954.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2258.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64367180-3	chr1	64366679	64367679	+	954.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-165625.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124666583-3	chr2	124666106	124667106	+	954.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172537, exon 17 of 17)	3' UTR (NM_172537, exon 17 of 17)	13025.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-22743700-4	chr10	22743194	22744194	+	954.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12247.0	NM_011603	237336.0	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	0.0	6.5	3.5	4.5	18.0	16.5
Merged-chr8-123280768-5	chr8	123280276	123281276	+	954.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016925, intron 30 of 42)	L1MB7|LINE|L1	-26554.0	NM_028200	72325.0	Mm.276193	NM_028200	ENSMUSG00000001062	Vps9d1	1300018I17Rik|2410004N05Rik|5DOS1|Vsp9d1	VPS9 domain containing 1	protein-coding	28.0	135.5	90.0	5.0	9.5	20.5
Merged-chr14-77823034-3	chr14	77822536	77823536	+	954.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24068.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	28.0	18.5	14.0	19.5	9.0	3.5
Merged-chr6-83636105-3	chr6	83635605	83636605	+	954.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20011.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	31.0	51.0	46.5	29.0	49.5	45.5
Merged-chr9-66876719-3	chr9	66876240	66877240	+	954.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	-42034.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53151169-3	chr4	53150680	53151680	+	954.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	8715.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5576012-6	chr17	5575422	5576422	+	954.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	L2a|LINE|L2	83322.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-3665548-4	chr13	3665053	3666053	+	954.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31521.0	NM_001267724	142688.0	Mm.253061	NM_178283	ENSMUSG00000033781	Asb13	2210015B19Rik|6430573K02Rik|Asb-13|C85285	ankyrin repeat and SOCS box-containing 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12540153-4	chr19	12539663	12540663	+	954.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33347.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-46168934-3	chr9	46168437	46169437	+	954.305542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 4 of 24)	intron (NM_027498, intron 4 of 24)	-59693.0	NM_009692	11806.0	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-90965726-8	chr8	90965192	90966192	+	954.3035890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 4 of 39)	L1MC4a|LINE|L1	33443.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	107.5	259.5	199.5	85.0	194.0	206.5
Merged-chr8-92846771-4	chr8	92846277	92847277	+	954.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008610, intron 11 of 12)	intron (NM_008610, intron 11 of 12)	-8556.0	NM_173014	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	4.5	5.0	10.0	21.5	1.5	6.5
Merged-chr10-13513514-4	chr10	13513019	13514019	+	954.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025799, intron 6 of 6)	intron (NM_025799, intron 6 of 6)	12491.0	NM_025799	66848.0	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71632286-3	chr6	71631786	71632786	+	954.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362200, intron 1 of 25)	CpG	400.0	NM_173001	104263.0	Mm.260479	NM_173001	ENSMUSG00000053470	Kdm3a	1700105C21Rik|C230043E16Rik|JHDM2a|Jmjd1|Jmjd1a|KDM2A|TGSA|Tsga	lysine (K)-specific demethylase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173534721-4	chr2	173534173	173535173	+	954.255981	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12081.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145215525-4	chr4	145215027	145216027	+	954.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011610, exon 10 of 10)	3' UTR (NM_011610, exon 10 of 10)	-20522.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165645885-2	chr1	165645385	165646385	+	954.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11344.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-32856674-2	chr14	32856174	32857174	+	954.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361602)	promoter-TSS (NM_001361602)	-82.0	NM_178791	320736.0	Mm.187910	NM_178791	ENSMUSG00000050666	Vstm4	E130203B14Rik	V-set and transmembrane domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3180811-2	chr11	3180312	3181312	+	954.25	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 4 of 32)	PB1D10|SINE|Alu	12651.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100877314-2	chr7	100876814	100877814	+	954.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081116, intron 18 of 20)	intron (NM_001081116, intron 18 of 20)	5095.0	NR_037289	100526508.0		NR_037289	ENSMUSG00000093296	Mir3102	mmu-mir-3102	microRNA 3102	ncRNA	0.5	0.0	2.0	1.5	1.5	1.0
Merged-chr8-111299465-4	chr8	111298947	111299947	+	954.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146218, intron 1 of 12)	intron (NM_146218, intron 1 of 12)	775.0	NM_146218	234736.0	Mm.334816	NM_146218	ENSMUSG00000033596	Rfwd3	BC027246	ring finger and WD repeat domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9486566-4	chr18	9486085	9487085	+	954.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36431.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	8.0	1.0	5.5	0.0	3.0	7.5
Merged-chr15-27627450-2	chr15	27626950	27627950	+	954.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013792, intron 1 of 6)	intron (NM_001013792, intron 1 of 6)	3243.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4238136-3	chr7	4237638	4238638	+	954.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081239, exon 3 of 6)	exon (NM_001081239, exon 3 of 6)	384.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	122.0	232.5	171.5	115.0	263.0	201.0
Merged-chr15-6622708-4	chr15	6622197	6623197	+	954.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155272, intron 3 of 6)	MER77|LTR|ERVL	31606.0	NR_155272	102632231.0	Mm.444780	NR_155272		LOC102632231	-	uncharacterized LOC102632231	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108316380-4	chr8	108315908	108316908	+	954.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	268269.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-72533075-2	chr9	72532576	72533576	+	954.2000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033536, intron 1 of 8)	intron (NM_001033536, intron 1 of 8)	836.0	NM_001033536	319758.0	Mm.32081	NM_001033536	ENSMUSG00000037674	Rfx7	2510005N23Rik|9930116O05Rik|D130086K05Rik|Rfxdc2	regulatory factor X, 7	protein-coding	12.5	20.0	16.5	2.0	13.0	14.0
Merged-chr15-83561306-4	chr15	83560831	83561831	+	954.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	-2242.0	NM_009775	12257.0	Mm.1508	NM_009775	ENSMUSG00000041736	Tspo	Bzrp|IBP|PBR|Tspo1	translocator protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100791649-4	chr12	100791145	100792145	+	954.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361017, intron 3 of 14)	intron (NM_001361017, intron 3 of 14)	12588.0	NM_145448	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-26375202-8	chr10	26374676	26375676	+	954.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172787)	promoter-TSS (NM_172787)	43.0	NM_172787	237339.0	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	L3MBTL3 histone methyl-lysine binding protein	protein-coding	15.5	11.5	4.0	16.0	12.0	4.5
Merged-chr1-82291579-4	chr1	82291100	82292100	+	954.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010570)	promoter-TSS (NM_010570)	-161.0	NM_010570	16367.0	Mm.4952	NM_010570	ENSMUSG00000055980	Irs1	G972R|IRS-1	insulin receptor substrate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-82261770-4	chr12	82261278	82262278	+	954.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 2 of 23)	intron (NM_001167983, intron 2 of 23)	-49571.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49133001-3	chr7	49132521	49133521	+	954.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_154465, intron 3 of 3)	intron (NR_154465, intron 3 of 3)	29137.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-93248868-3	chr13	93248365	93249365	+	954.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54892.0	NM_147176	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	1.5	10.0	3.0	3.0	5.0	0.5
Merged-chr1-177110814-4	chr1	177110306	177111306	+	954.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011785, intron 2 of 12)	intron (NM_011785, intron 2 of 12)	137961.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64275806-4	chr13	64275272	64276272	+	954.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172587)	promoter-TSS (NM_172587)	-784.0	NM_172587	218294.0	Mm.25335	NM_172587	ENSMUSG00000033102	Cdc14b	2810432N10Rik|A530086E13Rik|AA472821|CDC14B3|Cdc14B1	CDC14 cell division cycle 14B	protein-coding	2.5	18.5	10.5	19.5	45.0	41.0
Merged-chr1-65177163-4	chr1	65176661	65177661	+	954.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111320, intron 1 of 8)	intron (NM_001111320, intron 1 of 8)	1981.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97989397-2	chr11	97988897	97989897	+	954.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NR_152188)	TTS (NR_152188)	-2951.0	NM_001163608	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-99937451-3	chr4	99936964	99937964	+	954.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028132, intron 1 of 10)	intron (NM_028132, intron 1 of 10)	8013.0	NM_028132	72157.0	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127609835-5	chr10	127609345	127610345	+	954.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 3 of 88)	intron (NM_008512, intron 3 of 88)	11303.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	13.0	41.5	33.0	10.0	30.0	10.0
Merged-chr14-61666061-4	chr14	61665560	61666560	+	954.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	16313.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79123018-4	chr12	79122508	79123508	+	954.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7780.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	0.0	1.5	0.0	1.0	0.0	0.0
Merged-chr5-32748190-3	chr5	32747697	32748697	+	954.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177298, intron 3 of 7)	intron (NM_177298, intron 3 of 7)	-1855.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	1.5	1.5	1.5	7.0	1.0	7.5
Merged-chr12-79050997-3	chr12	79050507	79051507	+	954.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181073, intron 4 of 28)	intron (NM_181073, intron 4 of 28)	21844.0	NM_181073	211945.0	Mm.478321	NM_181073	ENSMUSG00000060716	Plekhh1	AV308913|C77772|D630024D12Rik|mKIAA1200	pleckstrin homology domain containing, family H (with MyTH4 domain) member 1	protein-coding	4.0	0.0	3.0	4.0	3.5	6.5
Merged-chr3-108382020-6	chr3	108381526	108382526	+	954.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040560, intron 2 of 2)	intron (NR_040560, intron 2 of 2)	1715.0	NR_040560	100038453.0	Mm.214328	NR_040560	ENSMUSG00000074281	Gm12522	-	predicted gene 12522	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156201658-4	chr2	156201169	156202169	+	954.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172674, intron 1 of 17)	B3|SINE|B2	5022.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	28.0	60.5	23.0	47.0	74.0	56.5
Merged-chr5-21202295-4	chr5	21201780	21202780	+	954.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 3 of 26)	intron (NR_153365, intron 3 of 26)	16013.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20610724-4	chr16	20610225	20611225	+	954.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177940)	promoter-TSS (NM_177940)	36.0	NM_001357404	208624.0	Mm.24950	NM_145939	ENSMUSG00000033809	Alg3	D16Ertd36e|not	asparagine-linked glycosylation 3 (alpha-1,3-mannosyltransferase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50379390-4	chr6	50378892	50379892	+	954.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163645, intron 2 of 21)	intron (NM_001163645, intron 2 of 21)	3445.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83814312-4	chr7	83813809	83814809	+	954.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19470.0	NM_029335	75556.0	Mm.17649	NM_029335	ENSMUSG00000011154	Cfap161	1700026D08Rik|AW047638|AW551802	cilia and flagella associated protein 161	protein-coding	0.0	0.0	4.5	0.0	0.5	0.0
Merged-chr19-11293109-4	chr19	11292627	11293627	+	954.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045317, intron 2 of 2)	intron (NR_045317, intron 2 of 2)	-9314.0	NM_183190	269063.0	Mm.268940	NM_183190	ENSMUSG00000054523	Ms4a5	-	membrane-spanning 4-domains, subfamily A, member 5	protein-coding	60.0	106.5	90.0	30.0	89.0	84.5
Merged-chr10-10424555-4	chr10	10424041	10425041	+	954.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 10 of 36)	MLT2B4|LTR|ERVL	47773.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56010926-4	chr17	56010408	56011408	+	954.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026530, intron 3 of 12)	intron (NM_026530, intron 3 of 12)	1707.0	NM_026530	68047.0	Mm.358710	NM_026530	ENSMUSG00000003199	Mpnd	E130307M08Rik	MPN domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57563422-3	chr16	57562947	57563947	+	954.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	14205.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44313293-4	chr19	44312813	44313813	+	954.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	10142.0	NR_039574	100628619.0		NR_039574	ENSMUSG00000093315	Mir5114	mmu-mir-5114|mu-mir-5114	microRNA 5114	ncRNA	14.5	55.0	35.5	9.0	26.0	15.5
Merged-chr17-71137210-4	chr17	71136748	71137748	+	954.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46284.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80139030-6	chr10	80138539	80139539	+	954.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036582, intron 1 of 10)	CpG	328.0	NR_036582	100503659.0	Mm.485395	NM_015761	ENSMUSG00000035640	Cbarp	9630008F14|Dos|R29144/1	calcium channel, voltage-dependent, beta subunit associated regulatory protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-112091118-6	chr6	112090654	112091654	+	954.0277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119554.0	NR_027865	67336.0	Mm.378014	NR_027865	ENSMUSG00000100219	1700054K19Rik	-	RIKEN cDNA 1700054K19 gene	ncRNA	6.5	12.0	9.5	15.5	16.5	20.5
Merged-chr6-53968608-4	chr6	53968106	53969106	+	954.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027749, intron 2 of 12)	intron (NM_027749, intron 2 of 12)	10067.0	NM_027749	71287.0	Mm.158654	NM_027749	ENSMUSG00000052955	Cpvl	4933436L16Rik|HVLP	carboxypeptidase, vitellogenic-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-181256443-4	chr1	181255970	181256970	+	954.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44492.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-46905210-4	chr13	46904742	46905742	+	954.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010617, intron 2 of 37)	intron (NM_010617, intron 2 of 37)	24476.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	26.0	123.5	85.5	29.5	57.0	26.5
Merged-chr5-122345228-2	chr5	122344728	122345728	+	954.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144912, intron 4 of 10)	B1_Mur1|SINE|Alu	8967.0	NM_144912	231724.0	Mm.255587	NM_144912	ENSMUSG00000038569	Rad9b	A630082N15Rik|BC021784	RAD9 checkpoint clamp component B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-82691624-4	chr7	82691139	82692139	+	954.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175317, intron 12 of 19)	intron (NM_175317, intron 12 of 19)	43025.0	NM_175317	101592.0	Mm.238020	NM_175317	ENSMUSG00000038563	Efl1	4932434J20Rik|6030468D11Rik|AI451340|AU019507|AU022896|D7Ertd791e|Eftud1	elongation factor like GPTase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69686651-2	chr11	69686151	69687151	+	954.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011614, exon 7 of 7)	3' UTR (NM_011614, exon 7 of 7)	-1097.0	NM_023517	69583.0	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-81634463-2	chr9	81633963	81634963	+	954.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040397, intron 1 of 3)	intron (NR_040397, intron 1 of 3)	-1911.0	NM_010482	15551.0	Mm.445308	NM_010482	ENSMUSG00000049511	Htr1b	-	5-hydroxytryptamine (serotonin) receptor 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77296280-2	chr10	77295780	77296780	+	954.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024838, intron 10 of 11)	intron (NM_001024838, intron 10 of 11)	36980.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23953745-4	chr11	23953256	23954256	+	954.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13C2|LTR|ERVK	-58486.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-133113729-2	chr2	133113229	133114229	+	954.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-167693.0	NM_198029	241639.0	Mm.209784	NM_198029	ENSMUSG00000027356	Fermt1	5830467P10Rik|Kindlin-1	fermitin family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6534070-3	chr15	6533561	6534561	+	954.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45786.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102444336-2	chr12	102443836	102444836	+	954.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4523.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	21.5	98.0	61.0	25.0	98.0	75.0
Merged-chr9-108501761-2	chr9	108501261	108502261	+	954.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027804)	TTS (NM_027804)	-6244.0	NM_133794	97541.0	Mm.272427	NM_133794	ENSMUSG00000032604	Qars	1110018N24Rik|1200016L19Rik|C80286|GLNRS	glutaminyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4573874-3	chr2	4573387	4574387	+	954.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 3 of 11)	intron (NM_001177844, intron 3 of 11)	14133.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72764150-3	chr5	72763679	72764679	+	954.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001113460, exon 14 of 19)	exon (NM_001113460, exon 14 of 19)	-11402.0	NM_001122754	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4_JH584295_random-595-1	chr4_JH584295_random	95	1095	+	954.0	f0_c57.idr		Intergenic											0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5528590-2	chr19	5528090	5529090	+	954.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18073.0	NM_001024560	225861.0	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	4.0	7.5	10.0	6.0	11.5	4.0
Merged-chr15-31460781-4	chr15	31460298	31461298	+	954.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172606, intron 25 of 25)	intron (NM_172606, intron 25 of 25)	-7109.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36513639-2	chr18	36513134	36514134	+	954.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010415, intron 2 of 5)	intron (NM_010415, intron 2 of 5)	2171.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	15.0	23.5	22.5	12.5	20.0	27.0
Merged-chr2-180256421-3	chr2	180255909	180256909	+	954.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025587)	promoter-TSS (NM_025587)	-970.0	NM_025587	66481.0	Mm.289669	NM_025587	ENSMUSG00000039001	Rps21	1810049N11Rik|2410030A14Rik	ribosomal protein S21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10252263-2	chr19	10251763	10252763	+	954.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 16 of 19)	intron (NM_198114, intron 16 of 19)	-11515.0	NM_001033481	225908.0	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37248751-1	chr10	37248251	37249251	+	954.0	f0_balb.idr	Intergenic	RMER19B|LTR|ERVK	-109825.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58870143-4	chr15	58869682	58870682	+	954.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2467.0	NM_026642	68260.0	Mm.278805	NM_026642	ENSMUSG00000037085	Trmt12	4632406N01Rik|AI449275|Tyw2	tRNA methyltranferase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-40958943-2	chr3	40958443	40959443	+	954.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040399, intron 1 of 9)	RMER1B|Other|Other	8312.0	NM_001040399	214048.0	Mm.46782	NM_027663	ENSMUSG00000025762	Larp1b	1700108L22Rik|4933421B21Rik|AA690246|Larp2	La ribonucleoprotein domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65555260-2	chr9	65554760	65555760	+	954.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153119, exon 6 of 6)	3' UTR (NM_153119, exon 6 of 6)	24827.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23778725-2	chr17	23778225	23779225	+	954.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357140, intron 2 of 2)	intron (NM_001357140, intron 2 of 2)	-7123.0	NM_001357994	224613.0	Mm.328835	NM_153791	ENSMUSG00000040097	Flywch1	E030034P13Rik|mKIAA1552	FLYWCH-type zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr13-20292523-4	chr13	20292041	20293041	+	954.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 13 of 21)	intron (NM_080288, intron 13 of 21)	-180449.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	28.0	23.5	11.0	7.5	21.0	21.5
Merged-chr9-66213011-3	chr9	66212504	66213504	+	954.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010019, intron 2 of 11)	intron (NM_010019, intron 2 of 11)	54778.0	NM_010019	13143.0	Mm.304472	NM_010019	ENSMUSG00000032380	Dapk2	-	death-associated protein kinase 2	protein-coding	4.0	1.5	3.5	11.0	4.0	2.0
Merged-chr17-32111335-3	chr17	32110836	32111836	+	954.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19913.0	NR_027316	435518.0	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-110617938-2	chr8	110617438	110618438	+	954.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146216)	promoter-TSS (NM_146216)	-629.0	NR_151674	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115061305-2	chr11	115060805	115061805	+	954.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172050, intron 1 of 3)	intron (NM_172050, intron 1 of 3)	734.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9084123-2	chr13	9083623	9084623	+	954.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-9758.0	NM_001311117	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46516503-2	chr19	46516003	46517003	+	954.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_053100)	TTS (NM_053100)	14855.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80169215-4	chr18	80168719	80169719	+	954.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-17020.0	NR_131039	105246506.0	Mm.392326	NR_131039		LOC105246506	-	uncharacterized LOC105246506	ncRNA	39.5	64.5	57.0	34.5	63.0	54.5
Merged-chr19-46322380-2	chr19	46321880	46322880	+	954.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347454, exon 6 of 18)	exon (NM_001347454, exon 6 of 18)	4486.0	NM_001347454	73728.0	Mm.268532	NM_028627	ENSMUSG00000037126	Psd	1110007H17Rik|A930015K15|Efa6|Efa6a|Psdl|mKIAA2011	pleckstrin and Sec7 domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17215209-4	chr10	17214705	17215705	+	953.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119423.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	36.0	29.5	36.5	51.0	41.5	34.0
Merged-chr16-25022738-4	chr16	25022253	25023253	+	953.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36886.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64341114-4	chr9	64340624	64341624	+	953.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177784)	promoter-TSS (NM_001177784)	133.0	NM_001001295	213550.0	Mm.268341	NM_172519	ENSMUSG00000032396	Dis3l	AV340375	DIS3 like exosome 3'-5' exoribonuclease	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-67170481-4	chr6	67170014	67171014	+	953.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96465.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46793077-4	chr11	46792583	46793583	+	953.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	-17716.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78264594-6	chr17	78264084	78265084	+	953.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 2 of 16)	Tigger12A|DNA|TcMar-Tigger	64336.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69072881-5	chr11	69072209	69073209	+	953.93335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028566)	promoter-TSS (NR_028566)	-717.0	NR_028566	100216530.0	Mm.453052	NR_028566	ENSMUSG00000064899	Snord118	MBI-34	small nucleolar RNA, C/D box 118	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27038447-4	chr17	27037947	27038947	+	953.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9188.0	NM_027544	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	44.0	95.0	58.5	0.0	3.0	1.0
Merged-chr5-112298827-3	chr5	112298319	112299319	+	953.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	22128.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	8.0	10.0	7.5	4.0	15.5	11.0
Merged-chr11-118222552-4	chr11	118222051	118223051	+	953.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-9809.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69679317-4	chr11	69678823	69679823	+	953.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030702, intron 2 of 10)	intron (NM_030702, intron 2 of 10)	2647.0	NM_030702	80886.0	Mm.284592	NM_030702	ENSMUSG00000005204	Senp3	AA408656|Smt3ip|Smt3ip1	SUMO/sentrin specific peptidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74931809-4	chr15	74931310	74932310	+	953.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23241.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	155.0	328.5	156.5	58.0	126.5	97.5
Merged-chr17-63374386-4	chr17	63373898	63374898	+	953.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 5 of 8)	MTA_Mm|LTR|ERVL-MaLR	-61425.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-83831298-4	chr9	83830787	83831787	+	953.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3402.0	NM_009445	22137.0	Mm.1904	NM_009445	ENSMUSG00000038379	Ttk	AL022661|Esk1|Mps1|PYT|esk	Ttk protein kinase	protein-coding	16.5	55.0	29.5	13.5	53.5	25.0
Merged-chr2-167497478-4	chr2	167496945	167497945	+	953.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030743, intron 1 of 7)	B3|SINE|B2	-4571.0	NM_001356523	263876.0	Mm.34342	NM_170756	ENSMUSG00000047030	Spata2	AI504642|mKIAA0757	spermatogenesis associated 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3421060-4	chr5	3420538	3421538	+	953.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 3 of 7)	intron (NM_009873, intron 3 of 7)	77145.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94597847-4	chr10	94597355	94598355	+	953.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11656.0	NR_106070	102466817.0		NR_106070	ENSMUSG00000098544	Mir7211	Gm27536|mmu-mir-7211	microRNA 7211	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74307653-4	chr1	74307151	74308151	+	953.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039509, intron 2 of 9)	B1_Mur2|SINE|Alu	-3315.0	NM_027154	69660.0	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80688041-4	chr10	80687544	80688544	+	953.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 3 of 3)	B3|SINE|B2	-11751.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69501355-2	chr12	69500855	69501855	+	953.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25805.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	11.5	13.0	4.0	8.0	16.5	9.5
Merged-chr1-105891209-4	chr1	105890692	105891692	+	953.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99090.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40129384-3	chr10	40128897	40129897	+	953.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	12857.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76581429-4	chr11	76580981	76581981	+	953.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-3742.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	27.5	12.0	6.0	9.0	16.5	6.5
Merged-chr12-80642927-3	chr12	80642433	80643433	+	953.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347409, intron 1 of 4)	intron (NM_001347409, intron 1 of 4)	1178.0	NM_007951	13877.0	Mm.246551	NM_007951	ENSMUSG00000021131	Erh	Mer|Prei1	ERH mRNA splicing and mitosis factor	protein-coding	0.5	3.5	9.5	1.5	21.0	2.0
Merged-chr19-8982873-4	chr19	8982438	8983438	+	953.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6346.0	NR_104460	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-21535676-6	chr17	21535201	21536201	+	953.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_144515, exon 1 of 5)	5' UTR (NM_144515, exon 1 of 5)	162.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	25.0	46.5	66.0	10.5	47.5	39.0
Merged-chr13-73804653-4	chr13	73804169	73805169	+	953.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 17 of 24)	intron (NM_001360694, intron 17 of 24)	40972.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	0.5	7.0	13.5	11.5	18.0	13.0
Merged-chr17-5402229-4	chr17	5401729	5402729	+	953.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16538.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75832257-3	chr15	75831732	75832732	+	953.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172121, intron 3 of 11)	ID_B1|SINE|B4	9676.0	NM_172121	223642.0	Mm.209800	NM_172121	ENSMUSG00000075600	Zc3h3	BC049953|Kiaa0150|Smicl|Zc3hdc3	zinc finger CCCH type containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122465148-4	chr8	122464653	122465653	+	953.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033142)	TTS (NM_001033142)	-4461.0	NM_013914	30927.0	Mm.103673	NM_013914	ENSMUSG00000006587	Snai3	AI643946|Smuc|Zfp293	snail family zinc finger 3	protein-coding	7.5	14.5	5.0	4.5	8.5	4.5
Merged-chr13-4777043-4	chr13	4776533	4777533	+	953.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-167869.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	3.0	7.0	0.0	0.5	4.0	1.0
Merged-chr18-37984493-4	chr18	37983991	37984991	+	953.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139206, intron 18 of 32)	intron (NM_139206, intron 18 of 32)	6454.0	NR_105946	102466913.0		NR_105946	ENSMUSG00000098297	Mir6980	Gm27969|mmu-mir-6980	microRNA 6980	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72556340-4	chr5	72555840	72556840	+	953.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133921, exon 3 of 23)	exon (NM_133921, exon 3 of 23)	3305.0	NM_001359837	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53218901-3	chr4	53218409	53219409	+	953.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27287.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59974820-3	chr10	59974339	59975339	+	953.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23069.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39553243-8	chr18	39552738	39553738	+	953.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65993.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-105590127-4	chr11	105589680	105590680	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_181071, exon 1 of 26)	5' UTR (NM_181071, exon 1 of 26)	194.0	NM_181071	77097.0	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-99194698-4	chr4	99194212	99195212	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175029, intron 1 of 10)	intron (NM_175029, intron 1 of 10)	565.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	178.5	301.5	277.5	113.0	292.0	223.0
Merged-chr1-162477975-4	chr1	162477475	162478475	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172646)	promoter-TSS (NM_172646)	59.0	NM_172646	103967.0	Mm.441620	NM_172646	ENSMUSG00000040265	Dnm3	9630020E24Rik|AW061159|B230343F03Rik|C530045C17|Dyna III|mKIAA0820	dynamin 3	protein-coding	7.0	0.5	5.0	1.5	0.5	5.0
Merged-chr11-120457193-4	chr11	120456754	120457754	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152807)	promoter-TSS (NM_152807)	816.0	NM_001356385	66431.0	Mm.45063	NM_025560	ENSMUSG00000039670	Oxld1	1810049H13Rik	oxidoreductase like domain containing 1	protein-coding	1.5	39.0	7.5	4.0	22.5	8.5
Merged-chr11-32224997-4	chr11	32224489	32225489	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1516.0	NM_010822	268395.0	Mm.263161	NM_010822	ENSMUSG00000020287	Mpg	9830006D05|AI326268|APNG|Aag|Mid1	N-methylpurine-DNA glycosylase	protein-coding	0.0	0.0	5.5	0.0	1.0	1.0
Merged-chr4-63568124-4	chr4	63567637	63568637	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144905, intron 4 of 9)	MIRb|SINE|MIR	7910.0	NM_144905	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-103364389-2	chr9	103363866	103364866	+	953.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_175833, intron 1 of 4)	RSINE1|SINE|B4	613.0	NM_001134427	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	17.0	37.5	32.5	11.0	31.0	34.5
Merged-chr2-4598112-2	chr2	4597612	4598612	+	953.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 7 of 11)	(TC)n|Simple_repeat|Simple_repeat	38358.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139978740-4	chr7	139978234	139979234	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347613)	promoter-TSS (NM_001347613)	21.0	NM_001347614	381933.0	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95507052-4	chr10	95506552	95507552	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-5103.0	NM_001359477	67270.0	Mm.30008	NM_026065	ENSMUSG00000062981	Mrpl42	2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|L42mt|MRP-L31|MRP-L42|MRP-S32|PTD007|Rpml31|S32mt	mitochondrial ribosomal protein L42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38679065-4	chr16	38678573	38679573	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 1 of 11)	RCHARR1|DNA|hAT-Charlie	33962.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	2.0	4.0	0.0	0.0	5.0	0.0
Merged-chr11-70506618-4	chr11	70506122	70507122	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029360, intron 1 of 4)	intron (NM_029360, intron 1 of 4)	1348.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155470621-4	chr1	155470112	155471112	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-53168.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53089148-2	chr4	53088648	53089648	+	953.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 11 of 49)	intron (NM_013454, intron 11 of 49)	70747.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.5	0.0	1.5	0.0	0.0	8.0
Merged-chr10-61122504-4	chr10	61121994	61122994	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009163, intron 3 of 14)	intron (NM_009163, intron 3 of 14)	25190.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-69667935-4	chr16	69667433	69668433	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	132448.0	NR_130991	78110.0	Mm.211406	NR_130991	ENSMUSG00000107073	4930428D20Rik	Gm43265	RIKEN cDNA 4930428D20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25282305-4	chr17	25281802	25282802	+	953.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31B2|LTR|ERVK	-7992.0	NM_011665	22196.0	Mm.240044	NM_011665	ENSMUSG00000015120	Ube2i	5830467E05Rik|UBC9|Ubce2i|Ubce9	ubiquitin-conjugating enzyme E2I	protein-coding	14.0	6.0	2.5	8.0	11.5	13.5
Merged-chr11-58307737-4	chr11	58307200	58308200	+	953.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_182996, exon 2 of 12)	exon (NM_182996, exon 2 of 12)	631.0	NM_001040686	103836.0	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	21.5	10.5	16.0	0.0	5.5	1.0
Merged-chr10-81464509-3	chr10	81463994	81464994	+	953.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176954, intron 9 of 11)	CpG-1367	8637.0	NM_001311127	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25785027-4	chr7	25784528	25785528	+	953.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 4 of 19)	intron (NM_009465, intron 4 of 19)	3705.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86145046-7	chr17	86144492	86145492	+	953.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030133, intron 1 of 20)	CpG	183.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	3.5	3.0	1.5	3.5	9.0	5.0
Merged-chr10-57721795-2	chr10	57721295	57722295	+	953.7000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_008863, intron 4 of 5)	B1_Mm|SINE|Alu	-63128.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-129586187-4	chr5	129585675	129586675	+	953.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011846, intron 1 of 9)	intron (NM_011846, intron 1 of 9)	2006.0	NM_011846	23948.0	Mm.42047	NM_011846	ENSMUSG00000029436	Mmp17	MT4-MMP|MT4MMP|MTMMP4	matrix metallopeptidase 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33746294-4	chr17	33745789	33746789	+	953.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008997, exon 5 of 5)	3' UTR (NM_008997, exon 5 of 5)	14197.0	NM_008997	19326.0	Mm.387587	NM_008997	ENSMUSG00000077450	Rab11b	A730055L17Rik	RAB11B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126588808-4	chr8	126588324	126589324	+	953.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164598, exon 2 of 2)	3' UTR (NM_001164598, exon 2 of 2)	4612.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-8351477-4	chr5	8350974	8351974	+	953.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	16686.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22478352-3	chr9	22477855	22478855	+	953.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178415, intron 2 of 22)	intron (NM_178415, intron 2 of 22)	2640.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118038550-3	chr10	118038055	118039055	+	953.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103232.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	7.5	2.0	0.0	2.0	11.0	25.5
Merged-chr14-17899783-3	chr14	17899268	17900268	+	953.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-81876.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	30.0	18.5	9.5	12.0	8.0	13.0
Merged-chr12-104124269-4	chr12	104123815	104124815	+	953.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3681.0	NM_173024	271047.0	Mm.120265	NM_173024	ENSMUSG00000066364	Serpina3b	6A1|A030003A19Rik	serine (or cysteine) peptidase inhibitor, clade A, member 3B	protein-coding	7.0	4.0	9.0	3.5	8.5	16.0
Merged-chr18-46298840-4	chr18	46298336	46299336	+	953.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160399, intron 2 of 9)	Lx8|LINE|L1	13092.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-24492728-4	chr12	24492230	24493230	+	953.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5851.0	NM_020614	21340.0	Mm.39082	NM_020614	ENSMUSG00000059669	Taf1b	4930408G01Rik|A230108M10Rik|TAFI68|Tafi86|p63	TATA-box binding protein associated factor, RNA polymerase I, B	protein-coding	14.0	20.0	6.5	4.5	22.5	6.0
Merged-chr16-91416477-3	chr16	91415997	91416997	+	953.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008349, intron 4 of 6)	MLT1A1|LTR|ERVL-MaLR	10262.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19305282-3	chr7	19304845	19305845	+	953.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347586, intron 3 of 4)	intron (NM_001347586, intron 3 of 4)	4700.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27366387-3	chr2	27365891	27366891	+	953.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	61217.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-57772621-4	chr14	57772104	57773104	+	953.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3d|LINE|L1	-25585.0	NM_009119	20220.0	Mm.30173	NM_009119	ENSMUSG00000021963	Sap18	C530046K05Rik|D11Ertd539e|EMegR4|Sap18a|Sinbp1	Sin3-associated polypeptide 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20479950-4	chr14	20479459	20480459	+	953.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009674, exon 1 of 13)	5' UTR (NM_009674, exon 1 of 13)	174.0	NM_001110794	11750.0	Mm.280231	NM_009674	ENSMUSG00000021814	Anxa7	AI265384|AI316497|Anx7|synexin	annexin A7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59456734-4	chr15	59456227	59457227	+	953.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	82529.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	29.5	23.0	21.5	35.0	21.5	22.5
Merged-chr12-102376665-2	chr12	102376165	102377165	+	953.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 7 of 9)	intron (NM_177620, intron 7 of 9)	63148.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22517771-4	chr16	22517246	22518246	+	953.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_130988)	TTS (NR_130988)	6266.0	NR_130988	78082.0	Mm.243927	NR_130988	ENSMUSG00000089874	9230117E06Rik	-	RIKEN cDNA 9230117E06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97422357-4	chr15	97421846	97422846	+	953.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-175059.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128036095-3	chr10	128035594	128036594	+	953.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013608, intron 1 of 7)	CpG	748.0	NM_001113199	17938.0	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-75978410-3	chr5	75977938	75978938	+	953.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010612)	promoter-TSS (NM_010612)	-10.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36121409-4	chr1	36120903	36121903	+	953.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22910.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-64834699-4	chr14	64834219	64835219	+	953.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 6 of 9)	intron (NM_177338, intron 6 of 9)	115138.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37860541-4	chr1	37860043	37861043	+	953.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290720, intron 1 of 17)	ORR1B2|LTR|ERVL-MaLR	4539.0	NM_207228	211484.0	Mm.332756	NM_207228	ENSMUSG00000060771	Tsga10	4933432N21Rik|AI843383|Gm217|Mtsga10	testis specific 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-52480747-4	chr12	52480267	52481267	+	953.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_136881)	promoter-TSS (NR_136881)	-158.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77686677-4	chr11	77686212	77687212	+	953.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024205, intron 1 of 3)	intron (NM_001024205, intron 1 of 3)	573.0	NM_001024205	68564.0	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27801639-2	chr15	27801139	27802139	+	953.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 34 of 56)	intron (NM_001081302, intron 34 of 56)	-120097.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83456003-4	chr6	83455488	83456488	+	953.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347313, intron 1 of 11)	CpG	404.0	NM_001347313	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117115332-6	chr5	117114858	117115858	+	953.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122666, intron 1 of 12)	intron (NM_001122666, intron 1 of 12)	635.0	NM_001122666	71954.0	Mm.34456	NM_178622	ENSMUSG00000066900	Suds3	2400003N08Rik|2410008L21Rik|AU067672|mSds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	protein-coding	9.5	34.5	27.5	18.5	36.5	20.5
Merged-chr17-24721721-2	chr17	24721215	24722215	+	953.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_002897)	TTS (NR_002897)	926.0	NR_002897	104366.0	Mm.157452	NR_002897	ENSMUSG00000077709	Snora64	MBI-29|Rnu64	small nucleolar RNA, H/ACA box 64	snoRNA	29.5	76.5	34.5	9.0	50.5	26.5
Merged-chr10-67316300-2	chr10	67315800	67316800	+	953.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31019.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10863136-2	chr19	10862636	10863636	+	953.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133804, intron 7 of 10)	intron (NM_133804, intron 7 of 10)	6643.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91660837-4	chr12	91660333	91661333	+	953.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	-70346.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56756820-2	chr18	56756320	56757320	+	953.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49007.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99978217-2	chr7	99977717	99978717	+	953.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175388, intron 1 of 5)	PB1D10|SINE|Alu	2241.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-75847097-2	chr13	75846597	75847597	+	953.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053108, intron 1 of 2)	intron (NM_053108, intron 1 of 2)	7211.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	0.0	21.5	0.0	4.5	9.0	6.0
Merged-chr9-14383358-2	chr9	14382858	14383858	+	953.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2116.0	NM_028013	71946.0	Mm.41423	NM_028013	ENSMUSG00000037419	Endod1	2210414F18Rik|2310067E08Rik|C85344	endonuclease domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101985365-1	chr11	101984865	101985865	+	953.5	f1_c57bl6.idr	promoter-TSS (NM_028207)	promoter-TSS (NM_028207)	-574.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	3.0	38.5	5.5	14.0	18.5	9.0
Merged-chr17-35047278-4	chr17	35046785	35047785	+	953.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146215)	promoter-TSS (NM_001146215)	-540.0	NM_001146215	17687.0	Mm.24192	NM_013600	ENSMUSG00000007035	Msh5	Mut5	mutS homolog 5	protein-coding	26.5	102.0	46.5	38.0	117.0	55.5
Merged-chr15-86208837-2	chr15	86208337	86209337	+	953.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-5622.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101680040-2	chr13	101679540	101680540	+	953.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001077495)	TTS (NM_001077495)	12590.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155564787-2	chr4	155564287	155565287	+	953.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355599, intron 1 of 10)	intron (NM_001355599, intron 1 of 10)	972.0	NM_001355599	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78351778-4	chr15	78351289	78352289	+	953.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007780)	TTS (NM_007780)	3190.0	NR_106137	102465776.0		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	3.5	13.5	8.0	8.0	9.0	4.5
Merged-chr2-4391352-4	chr2	4390849	4391849	+	953.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172475, intron 1 of 22)	ORR1F|LTR|ERVL-MaLR	-9627.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9820591-2	chr18	9820091	9821091	+	953.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 2 of 9)	B3A|SINE|B2	112943.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117057747-2	chr8	117057247	117058247	+	953.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 11 of 42)	intron (NM_029686, intron 11 of 42)	24702.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125579184-1	chr7	125578684	125579684	+	953.5	f1_c57bl6.idr	3' UTR (NM_001008700, exon 11 of 11)	3' UTR (NM_001008700, exon 11 of 11)	-24245.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	8.0	6.0	10.0	8.0	27.0	2.5
Merged-chr5-144221622-2	chr5	144221122	144222122	+	953.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027410, intron 1 of 24)	intron (NM_027410, intron 1 of 24)	1993.0	NM_001356992	70381.0	Mm.239412	NM_027410	ENSMUSG00000066621	Tecpr1	2210010N04Rik|mKIAA1358	tectonin beta-propeller repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23895437-2	chr13	23894937	23895937	+	953.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_121611, exon 13 of 13)	non-coding (NR_121611, exon 13 of 13)	19570.0	NM_177016	319848.0	Mm.97959	NM_177016	ENSMUSG00000021336	Slc17a4	9130214H05Rik	solute carrier family 17 (sodium phosphate), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90695544-2	chr5	90695044	90696044	+	953.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55017.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	11.5	9.5	15.0	11.0	10.0	15.0
Merged-chr4-74297113-4	chr4	74296596	74297596	+	953.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356561, intron 3 of 20)	intron (NM_001356561, intron 3 of 20)	45217.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94264129-2	chr13	94263629	94264629	+	953.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346609, intron 1 of 8)	intron (NM_001346609, intron 1 of 8)	21152.0	NM_029153	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114929811-4	chr11	114929315	114930315	+	953.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199221, intron 1 of 3)	intron (NM_199221, intron 1 of 3)	4571.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144048053-4	chr3	144047541	144048541	+	953.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	154291.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17666795-4	chr12	17666287	17667287	+	953.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24022.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	1.0	1.0	0.0	4.0	15.0	1.0
Merged-chr3-61367248-3	chr3	61366745	61367745	+	953.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028712, exon 1 of 1)	3' UTR (NM_028712, exon 1 of 1)	2738.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172004608-3	chr1	172004079	172005079	+	953.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_033509, exon 8 of 8)	3' UTR (NM_033509, exon 8 of 8)	22716.0	NM_033509	93840.0	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	VANGL planar cell polarity 2	protein-coding	0.0	5.0	2.5	10.5	18.5	7.5
Merged-chr14-122191182-3	chr14	122190680	122191680	+	953.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029556, intron 1 of 7)	intron (NM_029556, intron 1 of 7)	9486.0	NM_029556	69634.0	Mm.34608	NM_029556	ENSMUSG00000025545	Clybl	0610033J05Rik|2310014M14Rik|AI256068|Clb	citrate lyase beta like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34077775-4	chr17	34077268	34078268	+	953.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14611.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	9.5	27.0	25.5	4.5	8.5	14.5
Merged-chr19-53020273-4	chr19	53019801	53020801	+	953.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133216, intron 3 of 20)	intron (NM_133216, intron 3 of 20)	-9545.0	NR_105834	102465220.0		NR_105834	ENSMUSG00000098730	Mir6407	Gm27832|mmu-mir-6407	microRNA 6407	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129370369-7	chr2	129369895	129370895	+	953.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008361, intron 1 of 6)	intron (NM_008361, intron 1 of 6)	493.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	27.0	107.0	58.0	71.0	168.0	86.5
Merged-chr8-4493952-4	chr8	4493433	4494433	+	953.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026058, intron 1 of 10)	intron (NM_026058, intron 1 of 10)	528.0	NM_026058	67260.0	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83649011-3	chr7	83648544	83649544	+	953.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 15 of 18)	intron (NM_001360088, intron 15 of 18)	6451.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	5.0	5.5	29.0	5.0	16.0	9.0
Merged-chr15-6396133-4	chr15	6395646	6396646	+	953.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	9398.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35573998-4	chr12	35573510	35574510	+	953.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39021.0	NM_001314027	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34140082-4	chr18	34139580	34140580	+	953.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-80904.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104285953-2	chr9	104285453	104286453	+	953.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-23023.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90490473-4	chr2	90489968	90490968	+	953.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-11294.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	47.0	99.0	53.0	23.0	47.5	59.0
Merged-chr4-88032634-8	chr4	88031887	88032887	+	953.412476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027326, intron 1 of 10)	CpG	1020.0	NM_027326	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126584003-2	chr7	126583503	126584503	+	953.400024	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001329789)	promoter-TSS (NM_001329789)	-767.0	NM_009907	12752.0	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139382137-3	chr5	139381656	139382656	+	953.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	1517.0	NM_030258	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75459326-4	chr11	75458844	75459844	+	953.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-2195.0	NR_030711	100042498.0	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93090433-4	chr10	93089943	93090943	+	953.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8847.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	0.0	24.5	5.0	0.0	9.5	7.0
Merged-chr9-116241602-3	chr9	116241144	116242144	+	953.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52464.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	7.5	0.0	4.0	0.0	0.0	3.0
Merged-chr10-84390933-3	chr10	84390441	84391441	+	953.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 4 of 6)	intron (NM_001004363, intron 4 of 6)	49530.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93429701-3	chr10	93429218	93430218	+	953.3777470000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3389.0	NR_106161	102465791.0		NR_106161	ENSMUSG00000098679	Mir7688	Gm27874|mmu-mir-7688	microRNA 7688	ncRNA	4.5	3.0	0.0	0.0	0.5	0.0
Merged-chr3-87337271-4	chr3	87336787	87337787	+	953.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-20594.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	23.5	114.5	72.5	28.5	67.0	33.0
Merged-chr3-93506090-4	chr3	93505574	93506574	+	953.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14422.0	NM_016740	20195.0	Mm.280038	NM_016740	ENSMUSG00000027907	S100a11	EMAPI|Emap1|S100a14|S100c|cal	S100 calcium binding protein A11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116828064-4	chr11	116827569	116828569	+	953.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026280)	promoter-TSS (NM_026280)	-23.0	NM_026280	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	3.0	4.0	1.5	5.0	18.0	6.0
Merged-chr8-72836096-4	chr8	72835575	72836575	+	953.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317391, intron 13 of 15)	intron (NM_001317391, intron 13 of 15)	74416.0	NM_007975	14065.0	Mm.12948	NM_007975	ENSMUSG00000050147	F2rl3	PAR4	coagulation factor II (thrombin) receptor-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-105164928-4	chr14	105164439	105165439	+	953.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134077, intron 1 of 20)	MTEa|LTR|ERVL-MaLR	12388.0	NM_134077	74213.0	Mm.474531	NM_134077	ENSMUSG00000022119	Rbm26	1700009P03Rik|AI447318|C230097K14Rik|C86225|MLZ-393|Pro1777|Se70-2	RNA binding motif protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148820604-2	chr5	148820104	148821104	+	953.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5B|DNA|hAT-Charlie	42641.0	NR_131106	78015.0	Mm.243839	NR_131106	ENSMUSG00000085740	4930505K14Rik	-	RIKEN cDNA 4930505K14 gene	ncRNA	0.0	0.0	1.0	2.0	0.5	1.0
Merged-chr10-68134735-4	chr10	68134246	68135246	+	953.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 5 of 9)	intron (NM_023598, intron 5 of 9)	143980.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	4.0	37.0	14.5	24.0	43.5	24.0
Merged-chr11-3171468-2	chr11	3170965	3171965	+	953.333374	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 6 of 32)	B1_Mur1|SINE|Alu	21998.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129344615-4	chr6	129344123	129345123	+	953.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5621.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-89481935-3	chr7	89481437	89482437	+	953.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35649.0	NM_029614	76453.0	Mm.250438	NM_029614	ENSMUSG00000039405	Prss23	2310046G15Rik|4930479H08Rik|AI790574|Spuve	protease, serine 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136450519-3	chr4	136450023	136451023	+	953.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19238.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	20.5	17.0	42.0	49.0	116.0	90.5
Merged-chr2-132596675-2	chr2	132596175	132597175	+	953.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1521.0	NR_033468	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128126602-3	chr2	128126121	128127121	+	953.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284410)	promoter-TSS (NM_001284410)	583.0	NM_009754	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171409363-3	chr1	171408873	171409873	+	953.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001005508, exon 12 of 12)	3' UTR (NM_001005508, exon 12 of 12)	-1940.0	NM_001305678	22278.0	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	2.0	18.0	13.5	18.0	13.5	15.0
Merged-chr16-5431881-4	chr16	5431368	5432368	+	953.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-175912.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83650639-3	chr6	83650117	83651117	+	953.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016751, intron 4 of 6)	intron (NM_016751, intron 4 of 6)	5499.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	26.0	60.0	44.5	30.5	46.0	43.5
Merged-chr4-148045002-4	chr4	148044480	148045480	+	953.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027809, intron 4 of 12)	intron (NR_027809, intron 4 of 12)	3791.0	NM_001161798	17769.0	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	methylenetetrahydrofolate reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111699463-4	chr12	111698977	111699977	+	953.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13476.0	NM_001324481	70369.0	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163575499-4	chr2	163574946	163575946	+	953.2976070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26868.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81132098-4	chr13	81131543	81132543	+	953.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	167969.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-62354579-4	chr14	62354082	62355082	+	953.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026001, intron 5 of 10)	L1M2|LINE|L1	22514.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	14.5	4.0	4.5	8.0	1.0	0.5
Merged-chr4-87653619-4	chr4	87653095	87654095	+	953.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	152728.0	NM_001286158	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85841587-4	chr8	85841083	85842083	+	953.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028007)	promoter-TSS (NM_028007)	581.0	NM_199446	102093.0	Mm.237296	NM_199446	ENSMUSG00000036879	Phkb	AI463271	phosphorylase kinase beta	protein-coding	8.5	18.5	18.0	13.0	15.0	12.0
Merged-chr11-53758204-4	chr11	53757694	53758694	+	953.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5460.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71260537-3	chr17	71260029	71261029	+	953.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357338, intron 4 of 7)	B1F|SINE|Alu	50482.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	2.0	10.5	1.0	14.5	47.5	34.0
Merged-chr7-145115010-2	chr7	145114510	145115510	+	953.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93109.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	1.5	1.5	2.5	0.5	1.0	0.0
Merged-chr5-140381326-4	chr5	140380822	140381822	+	953.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172277, intron 1 of 10)	intron (NM_172277, intron 1 of 10)	7986.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98357429-4	chr7	98356924	98357924	+	953.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168541, intron 2 of 3)	intron (NM_001168541, intron 2 of 3)	3864.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	18.0	70.5	78.5	21.0	70.5	79.0
Merged-chr9-41162608-4	chr9	41162093	41163093	+	953.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-4531.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	64.0	160.5	107.0	6.5	76.5	65.5
Merged-chr13-37827864-4	chr13	37827353	37828353	+	953.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	CpG	460.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20841618-3	chr10	20841117	20842117	+	953.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-110930.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103330699-2	chr11	103330199	103331199	+	953.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133715)	TTS (NM_133715)	14003.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54989271-4	chr18	54988779	54989779	+	953.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 1 of 8)	intron (NM_001360787, intron 1 of 8)	901.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107322931-4	chr11	107322438	107323438	+	953.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	-133557.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30689506-3	chr16	30689015	30690015	+	953.244446	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	89792.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	64.5	191.0	94.5	18.0	24.5	24.5
Merged-chr4-120826893-4	chr4	120826363	120827363	+	953.2416380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001048168, intron 1 of 9)	intron (NM_001048168, intron 1 of 9)	-1122.0	NM_008692	18046.0	Mm.318389	NM_008692	ENSMUSG00000032897	Nfyc	-	nuclear transcription factor-Y gamma	protein-coding	7.0	6.5	1.5	0.0	4.0	1.0
Merged-chr2-16356401-6	chr2	16355881	16356881	+	953.2315060000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026162)	promoter-TSS (NM_026162)	77.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150508865-3	chr4	150508369	150509369	+	953.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001085492, exon 9 of 23)	exon (NM_001085492, exon 9 of 23)	143305.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	2.5	5.5	4.5	8.5	6.0	9.5
Merged-chr1-37318140-3	chr1	37317643	37318643	+	953.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	18305.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120049572-4	chr9	120049070	120050070	+	953.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009987, exon 2 of 2)	3' UTR (NM_009987, exon 2 of 2)	18726.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	13.0	11.0	20.0	17.0	26.0	26.0
Merged-chr7-98531782-3	chr7	98531264	98532264	+	953.2000119999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	37542.0	NM_001113379	434215.0	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	0.0	0.5	0.0	0.0	4.0	1.0
Merged-chr6-94222382-3	chr6	94221908	94222908	+	953.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130996, intron 1 of 1)	intron (NR_130996, intron 1 of 1)	15034.0	NR_130996	78178.0	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-90870539-4	chr8	90870047	90871047	+	953.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	41712.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	11.5	30.0	31.0	12.5	48.0	30.0
Merged-chr5-24908310-4	chr5	24907815	24908815	+	953.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310480, intron 3 of 13)	CpG	194.0	NM_001170556	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25298183-4	chr7	25297656	25298656	+	953.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008776)	promoter-TSS (NM_008776)	-170.0	NM_001357350	18476.0	Mm.597	NM_008776	ENSMUSG00000005447	Pafah1b3	Pafahg|mus[g]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-46724581-2	chr13	46724081	46725081	+	953.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_175749, intron 1 of 21)	intron (NM_175749, intron 1 of 21)	3268.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	2.0	4.0	5.5	2.0	4.5	5.5
Merged-chr2-35841745-4	chr2	35841240	35842240	+	953.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029774, intron 6 of 9)	intron (NM_029774, intron 6 of 9)	22550.0	NR_040618	77665.0	Mm.400558	NR_040618	ENSMUSG00000086449	9030204H09Rik	-	RIKEN cDNA 9030204H09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-77002631-3	chr16	77002110	77003110	+	953.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8271.0	NR_040573	76601.0	Mm.396217	NR_040573	ENSMUSG00000100857	1700041M19Rik	-	RIKEN cDNA 1700041M19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43396983-4	chr7	43396500	43397500	+	953.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11280.0	NM_172900	243958.0	Mm.24444	NM_172900	ENSMUSG00000030468	Siglecg	9830164H23|A630096C01Rik|Siglec-G|Siglec10|mSiglec-G	sialic acid binding Ig-like lectin G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36753251-3	chr16	36752755	36753755	+	953.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021301, intron 19 of 21)	intron (NM_021301, intron 19 of 21)	31707.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78897088-2	chr11	78896588	78897588	+	953.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-23699.0	NM_010927	18126.0	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-25793218-4	chr13	25792709	25793709	+	953.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	173107.0	NR_045062	100503530.0	Mm.86763	NR_045062	ENSMUSG00000086531	Gm11351	-	predicted gene 11351	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-24554652-4	chr8	24554130	24555130	+	953.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145949, intron 2 of 9)	intron (NM_145949, intron 2 of 9)	21703.0	NM_145949	209176.0	Mm.219580	NM_145949	ENSMUSG00000031549	Ido2	AI265623|C230043N17Rik|Ido-2|Indol1	indoleamine 2,3-dioxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27767004-13	chr2	27766478	27767478	+	953.1538699999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56395.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47004120-7	chr14	47003600	47004600	+	953.152405	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163433, intron 1 of 11)	intron (NM_001163433, intron 1 of 11)	2760.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	5.0	5.0	35.5	7.5	20.5	16.5
Merged-chr10-16593087-4	chr10	16592586	16593586	+	953.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	502696.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17393490-4	chr17	17392974	17393974	+	953.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025934, exon 10 of 10)	exon (NM_025934, exon 10 of 10)	-9212.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	69.5	200.5	200.5	67.5	182.5	155.5
Merged-chr7-49121480-4	chr7	49120951	49121951	+	953.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_154465)	TTS (NR_154465)	40707.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108710922-4	chr9	108710410	108711410	+	953.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008924, intron 1 of 10)	intron (NM_008924, intron 1 of 10)	18767.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31560158-4	chr17	31559666	31560666	+	953.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-4607.0	NR_027493	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-33270786-4	chr5	33270290	33271290	+	953.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198860, intron 1 of 9)	intron (NM_001198860, intron 1 of 9)	4214.0	NM_001310535	13016.0	Mm.7286	NM_013502	ENSMUSG00000037373	Ctbp1	BARS|CtBP3/BARS|D4S115h|D5H4S115|D5H4S115E	C-terminal binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32715357-4	chr19	32714872	32715872	+	953.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-3074.0	NM_026487	67979.0	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40325174-4	chr9	40324664	40325664	+	953.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	-3841.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44385333-4	chr19	44384839	44385839	+	953.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	22370.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	30.5	75.5	53.0	48.5	64.5	54.0
Merged-chr8-31031839-4	chr8	31031346	31032346	+	953.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57681.0	NM_025869	66959.0	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80676050-4	chr10	80675556	80676556	+	953.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021462, intron 1 of 13)	CpG-1308	237.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-29737090-4	chr5	29736607	29737607	+	953.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359198, intron 1 of 8)	intron (NM_001359198, intron 1 of 8)	-1171.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121312714-2	chr9	121312214	121313214	+	953.083374	f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	15212.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	6.0	2.0	3.5	2.0	1.5	0.5
Merged-chr3-90245466-4	chr3	90244973	90245973	+	953.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1961.0	NM_030080	78284.0	Mm.299952	NM_030080	ENSMUSG00000027938	Creb3l4	1700012K17Rik|5330432F22Rik|AIBZIP|AV040530|AV258827|CREB4|JAL|TISP40|acre1	cAMP responsive element binding protein 3-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-13173720-3	chr15	13173231	13174231	+	953.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007666)	promoter-TSS (NM_007666)	-56.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.0	3.5	6.0	3.0	3.5	6.5
Merged-chr3-127625479-4	chr3	127624983	127625983	+	953.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7653.0	NM_009718	11924.0	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding	1.0	2.0	1.5	0.0	1.5	1.0
Merged-chr6-37842958-4	chr6	37842480	37843480	+	953.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27831.0	NM_001272064	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-56576633-6	chr14	56576130	56577130	+	953.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145978, intron 1 of 34)	intron (NM_001145978, intron 1 of 34)	1011.0	NM_001145978	328417.0	Mm.379357	NM_001145978	ENSMUSG00000054509	Parp4	Adprtl1|C030027K23Rik|E230037B21Rik|Gm743|PARPL|PH5P|VAULT3|VPARP|p193	poly (ADP-ribose) polymerase family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112282893-4	chr5	112282368	112283368	+	953.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	6177.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30973875-4	chr5	30973371	30974371	+	953.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_053085, exon 3 of 3)	3' UTR (NM_053085, exon 3 of 3)	5194.0	NM_053085	69852.0	Mm.57874	NM_053085	ENSMUSG00000006642	Tcf23	2010002O16Rik|Out|bHLHa24	transcription factor 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-22297435-3	chr10	22296943	22297943	+	953.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-9277.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	4.5	2.5	2.0	6.5	13.5	4.5
Merged-chr13-41079625-4	chr13	41079099	41080099	+	953.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145802, intron 1 of 11)	CpG	107.0	NM_001145803	17152.0	Mm.8149	NM_008547	ENSMUSG00000021363	Mak	A930010O05Rik	male germ cell-associated kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79612943-4	chr12	79612452	79613452	+	953.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	311781.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-109220563-7	chr2	109220069	109221069	+	953.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029790, intron 2 of 5)	intron (NM_029790, intron 2 of 5)	57721.0	NM_029790	76894.0	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-78865047-4	chr7	78864539	78865539	+	953.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17828.0	NM_029585	76375.0	Mm.250541	NM_029585	ENSMUSG00000030610	Det1	2610034H20Rik	de-etiolated homolog 1 (Arabidopsis)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109011019-4	chr3	109010529	109011529	+	953.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163567, intron 1 of 10)	intron (NM_001163567, intron 1 of 10)	16578.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	1.0	5.0	3.0	6.5	7.5	4.5
Merged-chr9-44482711-4	chr9	44482205	44483205	+	953.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357490)	promoter-TSS (NM_001357490)	-120.0	NM_001357490	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40882992-4	chr10	40882501	40883501	+	953.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031877)	promoter-TSS (NM_031877)	142.0	NM_027879	71713.0	Mm.46063	NM_027879	ENSMUSG00000038446	Cdc40	1200003H23Rik|EHB3|PRP17	cell division cycle 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17939020-4	chr16	17938532	17939532	+	953.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10813.0	NM_153150	13358.0	Mm.229291	NM_153150	ENSMUSG00000003528	Slc25a1	1300019P08Rik|2610100G11Rik|AI194714|Ctp|Dgsj|Slc20a3	solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29360388-4	chr6	29359882	29360882	+	953.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_184053, intron 2 of 6)	intron (NM_184053, intron 2 of 6)	12276.0	NM_007594	12321.0	Mm.392075	NM_007594	ENSMUSG00000029767	Calu	9530075H20Rik	calumenin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-55869407-4	chr7	55868905	55869905	+	953.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164661, intron 2 of 31)	ORR1B2|LTR|ERVL-MaLR	27334.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	6.5	7.0	10.0	6.5	4.5	2.0
Merged-chr14-75837688-4	chr14	75837183	75838183	+	953.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	7281.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121494225-4	chr3	121493726	121494726	+	953.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145394, intron 10 of 14)	intron (NM_145394, intron 10 of 14)	38118.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66119048-4	chr7	66118551	66119551	+	953.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081163, intron 1 of 2)	intron (NM_001081163, intron 1 of 2)	9536.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-111067031-4	chr11	111066530	111067530	+	953.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008425, intron 1 of 1)	intron (NM_008425, intron 1 of 1)	866.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	18.0	35.0	46.5	13.5	34.0	7.5
Merged-chr7-81290726-4	chr7	81290209	81291209	+	953.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 3 of 21)	MER105|DNA|DNA	54525.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31105395-2	chr6	31104895	31105895	+	953.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-42302.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138340092-1	chr4	138339592	138340592	+	953.0	f1_balb.idr	intron (NM_028176, intron 3 of 3)	intron (NM_028176, intron 3 of 3)	-13796.0	NM_026880	68943.0	Mm.18539	NM_026880	ENSMUSG00000028756	Pink1	1190006F07Rik|AU042772|AW557854|BRPK|mFLJ00387	PTEN induced putative kinase 1	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr11-43358007-2	chr11	43357507	43358507	+	953.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16454.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16016149-2	chr7	16015649	16016649	+	953.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER91B|DNA|hAT-Tip100	-16654.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	10.0	39.0	14.5	10.0	29.5	20.0
Merged-chr10-75313905-2	chr10	75313405	75314405	+	953.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2972.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92093899-4	chr5	92093408	92094408	+	953.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-10164.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-89081498-1	chr7	89080998	89081998	+	953.0	f0_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	257289.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90302492-2	chr7	90301992	90302992	+	953.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_110348, exon 1 of 9)	non-coding (NR_110348, exon 1 of 9)	137.0	NR_110348	83671.0	Mm.26751	NM_031394	ENSMUSG00000030616	Sytl2	AI266830|Slp2|mKIAA1597	synaptotagmin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95828940-4	chr15	95828451	95829451	+	953.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155276, intron 1 of 1)	intron (NR_155276, intron 1 of 1)	1121.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141072153-2	chr7	141071653	141072653	+	953.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177897)	TTS (NM_177897)	-6076.0	NM_001162924	56460.0	Mm.350037	NM_019762	ENSMUSG00000054065	Pkp3	2310056L12Rik	plakophilin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76630209-3	chr11	76629684	76630684	+	953.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42286.0	NM_177182	320522.0	Mm.131585	NM_177182	ENSMUSG00000044243	Bhlha9	A830053O21Rik|Fingerin	basic helix-loop-helix family, member a9	protein-coding	0.0	1.0	2.5	4.5	1.5	2.0
Merged-chr9-5299366-3	chr9	5298837	5299837	+	953.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009807, exon 2 of 10)	exon (NM_009807, exon 2 of 10)	820.0	NM_009807	12362.0	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-85596822-1	chr13	85596322	85597322	+	953.0	f0_balb.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-307336.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	5.0	0.0	1.0	2.5	0.0	0.0
Merged-chr16-33912960-2	chr16	33912460	33913460	+	953.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 9 of 14)	intron (NM_001145884, intron 9 of 14)	54078.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128490302-2	chr10	128489802	128490802	+	953.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010860)	TTS (NM_010860)	2707.0	NM_001317220	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141009903-2	chr7	141009403	141010403	+	953.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025378, intron 1 of 1)	intron (NM_025378, intron 1 of 1)	841.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-74143843-2	chr10	74143343	74144343	+	953.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142748, intron 3 of 25)	RLTR41C|LTR|ERV1	321976.0	NM_001142735	11994.0	Mm.338933	NM_023115	ENSMUSG00000052613	Pcdh15	BB078305|Gm9815|Ush1f|av|nmf19|roda	protocadherin 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135787975-2	chr1	135787475	135788475	+	953.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11446.0	NM_021467	21952.0	Mm.44379	NM_021467	ENSMUSG00000026418	Tnni1	2700018B22Rik|AI747285|ssTnI	troponin I, skeletal, slow 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34044137-4	chr13	34043632	34044632	+	953.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026512, intron 1 of 6)	MTD|LTR|ERVL-MaLR	6491.0	NM_026512	68021.0	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	2.0	2.0	1.5	0.0	4.5	7.5
Merged-chr11-70541062-2	chr11	70540562	70541562	+	953.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361935, intron 2 of 23)	intron (NM_001361935, intron 2 of 23)	790.0	NM_001302476	18806.0	Mm.260177	NM_008876	ENSMUSG00000020828	Pld2	PLD1C	phospholipase D2	protein-coding	15.5	38.0	12.5	15.5	34.5	12.5
Merged-chr10-44361938-2	chr10	44361438	44362438	+	953.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358596, intron 6 of 6)	intron (NM_001358596, intron 6 of 6)	2262.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-24275302-1	chr6	24274802	24275802	+	953.0	f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-107210.0	NM_019481	55961.0	Mm.19299	NM_019481	ENSMUSG00000029700	Slc13a1	AI314066|AI987826|NaSi-1|Nas1	solute carrier family 13 (sodium/sulfate symporters), member 1	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr14-101658354-3	chr14	101657875	101658875	+	953.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016723, intron 2 of 8)	intron (NM_016723, intron 2 of 8)	4408.0	NM_016723	50933.0	Mm.275970	NM_016723	ENSMUSG00000022111	Uchl3	-	ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128333471-2	chr7	128332971	128333971	+	953.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-35340.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr12-57211821-3	chr12	57211300	57212300	+	953.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14328.0	NM_172577	217593.0	Mm.32835	NM_172577	ENSMUSG00000035472	Slc25a21	9930033G19Rik|A630030I10|BB158148	solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167761007-3	chr2	167760530	167761530	+	953.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69853.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21978258-2	chr9	21977758	21978758	+	953.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023622, intron 9 of 18)	B3A|SINE|B2	11195.0	NM_023622	71746.0	Mm.110594	NM_023622	ENSMUSG00000040146	Rgl3	1300003D20Rik|mFLJ00153	ral guanine nucleotide dissociation stimulator-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75065491-4	chr14	75065008	75066008	+	953.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	49481.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-75878108-3	chr13	75877606	75878606	+	953.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028493, intron 9 of 11)	intron (NM_028493, intron 9 of 11)	38220.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	0.0	1.5	1.5	4.0	10.0	7.0
Merged-chr9-21717583-2	chr9	21717083	21718083	+	953.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5993.0	NM_001252658	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	0.0	0.0	0.0	0.0	19.5	11.0
Merged-chr19-53406027-4	chr19	53405557	53406557	+	953.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15423.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	3.5	1.0	2.0	2.5	1.0	1.0
Merged-chr1-43241417-2	chr1	43240917	43241917	+	953.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44656.0	NM_001289533	14200.0	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29806904-2	chr11	29806404	29807404	+	953.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 17 of 41)	Lx8|LINE|L1	18764.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122067815-2	chr7	122067315	122068315	+	953.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026140)	promoter-TSS (NM_026140)	617.0	NM_138589	28018.0	Mm.282122	NM_138589	ENSMUSG00000030870	Ubfd1	AI467302|D7Wsu105e|D7Wsu128e|Ubph	ubiquitin family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-4079392-3	chr10	4078899	4079899	+	953.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 20 of 27)	intron (NM_001170785, intron 20 of 27)	106324.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-91461978-4	chr13	91461482	91462482	+	953.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 1 of 15)	CpG	885.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr12-111401648-3	chr12	111401146	111402146	+	953.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5163.0	NM_001101503	380787.0	Mm.125602	NM_001101503	ENSMUSG00000087075	Lbhd2	A230065H16Rik|Gm898|Lbh2	LBH domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-162665705-4	chr1	162665197	162666197	+	952.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7478.0	NM_001177581	100038657.0	Mm.416999	NM_001177581	ENSMUSG00000091060	Myocos	7420461P10Rik	myocilin opposite strand	protein-coding	18.0	33.5	10.5	10.5	18.0	12.5
Merged-chr16-57487931-4	chr16	57487426	57488426	+	952.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-61316.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	31.5	23.5	52.5	40.5	58.0	56.0
Merged-chr7-119879381-4	chr7	119878875	119879875	+	952.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163703, intron 1 of 2)	intron (NM_001163703, intron 1 of 2)	16083.0	NM_173408	233805.0	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	7.0	5.0	0.5	0.0	9.0	1.5
Merged-chr18-46472942-4	chr18	46472452	46473452	+	952.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7136.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110417415-4	chr12	110416868	110417868	+	952.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-29811.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-99182678-4	chr11	99182206	99183206	+	952.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27629.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98269845-4	chr12	98269342	98270342	+	952.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008152, intron 1 of 1)	intron (NM_008152, intron 1 of 1)	1207.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25241147-7	chr8	25240630	25241630	+	952.9285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39588.0	NM_177089	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-27106260-2	chr9	27105760	27106760	+	952.9166869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_023277, intron 2 of 8)	intron (NM_023277, intron 2 of 8)	49161.0	NM_023277	83964.0	Mm.28770	NM_023277	ENSMUSG00000031990	Jam3	1110002N23Rik|JAM-3|JAM-C|Jcam3	junction adhesion molecule 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116681670-4	chr6	116681171	116682171	+	952.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7835.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-79355032-4	chr17	79354546	79355546	+	952.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026514)	promoter-TSS (NM_026514)	45.0	NM_026514	260409.0	Mm.140601	NM_026514	ENSMUSG00000036533	Cdc42ep3	3200001F04Rik|AA986861|Borg2|Cep3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding	0.0	2.5	3.0	0.0	1.0	0.0
Merged-chr6-33982881-4	chr6	33982386	33983386	+	952.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46562.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95163395-4	chr4	95162865	95163865	+	952.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111143.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-67211919-4	chr14	67211423	67212423	+	952.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21369.0	NM_010095	13592.0	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116440184-3	chr6	116439677	116440677	+	952.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009662, intron 3 of 13)	intron (NM_009662, intron 3 of 13)	21001.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-23908434-3	chr5	23907946	23908946	+	952.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56213.0	NR_028536	100217436.0		NR_028536		Snord93	Gm22397|MBII-336	small nucleolar RNA, C/D box 93	snoRNA	5.0	3.0	4.5	7.5	21.5	14.0
Merged-chr5-29786363-3	chr5	29785862	29786862	+	952.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001037940, exon 10 of 10)	3' UTR (NM_001037940, exon 10 of 10)	-50426.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33906377-3	chr16	33905892	33906892	+	952.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 8 of 14)	intron (NM_001145884, intron 8 of 14)	60646.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-159783424-3	chr2	159782920	159783920	+	952.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-163921.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	24.0	43.5	26.5	17.0	18.5	13.5
Merged-chr4-120914719-4	chr4	120914217	120915217	+	952.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10288.0	NM_028457	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	12.5	9.0	15.0	2.5	22.0	9.0
Merged-chr15-88868013-4	chr15	88867531	88868531	+	952.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	5837.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23988056-4	chr16	23987591	23988591	+	952.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009744, intron 1 of 9)	CpG	761.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-119050155-4	chr10	119049650	119050650	+	952.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152787, exon 2 of 4)	non-coding (NR_152787, exon 2 of 4)	349.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73147117-4	chr15	73146583	73147583	+	952.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	37864.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11036265-4	chr16	11035729	11036729	+	952.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27331.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-19983115-4	chr16	19982610	19983610	+	952.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183390)	promoter-TSS (NM_183390)	-61.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-87732200-4	chr10	87731702	87732702	+	952.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126063.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.0	4.5	3.5	0.0	3.5	3.5
Merged-chr17-52725358-4	chr17	52724862	52725862	+	952.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001031811, intron 1 of 15)	intron (NM_001031811, intron 1 of 15)	122653.0	NM_001031811	211468.0	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35209538-5	chr2	35209134	35210134	+	952.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8514.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87753391-2	chr11	87752891	87753891	+	952.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3473.0	NR_029555	387160.0		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	0.0	5.0	0.0	7.0	11.0	3.0
Merged-chr16-44760358-4	chr16	44759858	44760858	+	952.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5378.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84647781-4	chr3	84647272	84648272	+	952.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18420.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-88068301-9	chr11	88067744	88068744	+	952.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016686)	promoter-TSS (NM_016686)	-35.0	NM_016686	22344.0	Mm.46628	NM_016686	ENSMUSG00000018377	Vezf1	AI848691|AW046909|db1	vascular endothelial zinc finger 1	protein-coding	5.0	46.5	21.0	12.5	13.0	27.0
Merged-chr3-18625690-3	chr3	18625185	18626185	+	952.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-145208.0	NR_040544	73959.0	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114509042-3	chr7	114508546	114509546	+	952.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011055, intron 7 of 15)	intron (NM_011055, intron 7 of 15)	53926.0	NR_110407	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	4.5
Merged-chr15-29824376-3	chr15	29823879	29824879	+	952.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110975.0	NR_039542	100628607.0		NR_039542	ENSMUSG00000092639	Mir3964	mmu-mir-3964|mu-mir-3964	microRNA 3964	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-80079789-4	chr2	80079266	80080266	+	952.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	-40864.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	6.5	7.5	2.5	0.5	9.0	0.0
Merged-chr17-71215378-4	chr17	71214856	71215856	+	952.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357791, intron 2 of 19)	intron (NM_001357791, intron 2 of 19)	10702.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	19.0	52.5	58.5	22.0	77.5	62.5
Merged-chr3-79229563-4	chr3	79229071	79230071	+	952.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045502, intron 1 of 2)	intron (NR_045502, intron 1 of 2)	16652.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	17.0	17.5	13.0	10.0	17.5	12.0
Merged-chr13-97295528-4	chr13	97295002	97296002	+	952.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54397.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69850133-3	chr11	69849636	69850636	+	952.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_031880)	TTS (NM_031880)	3492.0	NR_033133	70310.0	Mm.28874	NM_023564	ENSMUSG00000019461	Plscr3	2210403O21Rik|2610037N06Rik|ESTM3|X83310	phospholipid scramblase 3	protein-coding	0.0	5.0	3.5	6.0	20.0	15.5
Merged-chr10-94480649-3	chr10	94480158	94481158	+	952.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-34199.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-16457308-3	chr14	16456798	16457798	+	952.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289760, intron 5 of 9)	intron (NM_001289760, intron 5 of 9)	92092.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4865256-3	chr7	4864761	4865761	+	952.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026158, intron 1 of 5)	B2_Mm2|SINE|B2	918.0	NM_026158	67441.0	Mm.41385	NM_026158	ENSMUSG00000052605	Isoc2b	0610042E07Rik|AI553388|Isoc2	isochorismatase domain containing 2b	protein-coding	6.0	20.5	4.5	14.5	15.5	5.5
Merged-chr1-30948563-4	chr1	30948079	30949079	+	952.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011200, intron 1 of 5)	intron (NM_011200, intron 1 of 5)	1131.0	NR_002688	433406.0	Mm.389003	NR_002688		Gm13363	-	predicted gene 13363	pseudo	0.0	5.0	1.5	0.0	6.0	0.0
Merged-chr11-69365104-4	chr11	69364611	69365611	+	952.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146019, intron 1 of 39)	intron (NM_146019, intron 1 of 39)	4315.0	NM_146019	216848.0	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	28.0	24.0	21.0	28.5	19.0	25.0
Merged-chr2-102878220-4	chr2	102877711	102878711	+	952.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	23454.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	12.5	20.5	9.0	12.5	29.5	4.5
Merged-chr6-54955266-4	chr6	54954824	54955824	+	952.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172729, intron 1 of 11)	intron (NM_172729, intron 1 of 11)	16337.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	3.0	50.0	2.5	0.0	4.0	4.0
Merged-chr2-131479123-4	chr2	131478604	131479604	+	952.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	-12758.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-78849767-4	chr14	78849293	78850293	+	952.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027906, intron 1 of 44)	intron (NM_027906, intron 1 of 44)	615.0	NM_173758	219189.0	Mm.159651	NM_027906	ENSMUSG00000058997	Vwa8	1300010F03Rik|4932416F07Rik|AI957255|Kiaa0564|mKIAA0564	von Willebrand factor A domain containing 8	protein-coding	6.0	19.5	18.0	17.5	11.0	14.0
Merged-chr4-15269730-4	chr4	15269181	15270181	+	952.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181401, intron 1 of 2)	intron (NM_181401, intron 1 of 2)	3861.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34103049-4	chr17	34102562	34103562	+	952.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-7753.0	NR_046183	414076.0	Mm.473092	NR_046183	ENSMUSG00000098197	BC051537	-	cDNA sequence BC051537	ncRNA	123.0	362.5	194.5	52.5	129.5	60.5
Merged-chr5-86792920-3	chr5	86792416	86793416	+	952.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	-11350.0	NM_001347375	231386.0	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62045690-4	chr18	62045212	62046212	+	952.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	92637.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	115.5	203.5	136.0	114.5	188.5	97.5
Merged-chr7-45007380-2	chr7	45006911	45007911	+	952.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001008422, exon 7 of 11)	exon (NM_001008422, exon 7 of 11)	5076.0	NR_106021	102466218.0		NR_106021	ENSMUSG00000098839	Mir7054	Gm27557|mmu-mir-7054	microRNA 7054	ncRNA	0.0	0.0	6.5	0.0	10.0	0.0
Merged-chr11-32586144-3	chr11	32585651	32586651	+	952.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 4 of 18)	intron (NM_009288, intron 4 of 18)	52885.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-70330855-4	chr16	70330356	70331356	+	952.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 1 of 15)	intron (NM_028803, intron 1 of 15)	16907.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	4.5	8.0	15.0	2.5	2.0	0.5
Merged-chr6-29785967-4	chr6	29785472	29786472	+	952.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	L1M2|LINE|L1	17529.0	NM_001171000	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0.0	0.5	0.5	0.5	3.5	0.0
Merged-chr6-86594840-4	chr6	86594335	86595335	+	952.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-33339.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44832493-4	chr16	44832001	44833001	+	952.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207244, intron 2 of 5)	intron (NM_207244, intron 2 of 5)	11773.0	NM_207244	239849.0	Mm.445045	NM_207244	ENSMUSG00000062082	Cd200r4	F630107N04Rik|MCD200RLa	CD200 receptor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72155912-3	chr6	72155445	72156445	+	952.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-32748.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34117380-7	chr17	34116894	34117894	+	952.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204973, intron 2 of 12)	B1_Mus1|SINE|Alu	2506.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	21.5	57.5	43.0	17.5	81.0	36.0
Merged-chr8-83698457-4	chr8	83697899	83698899	+	952.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177262, intron 1 of 21)	intron (NM_177262, intron 1 of 21)	780.0	NM_177262	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	48.5	63.0	33.5	17.5	75.5	42.0
Merged-chr16-24434207-4	chr16	24433707	24434707	+	952.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 1 of 12)	intron (NM_178665, intron 1 of 12)	-13884.0	NM_001145952	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-49065735-4	chr14	49065233	49066233	+	952.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144535)	promoter-TSS (NM_144535)	-816.0	NM_001360070	74385.0	Mm.379235	NM_144535	ENSMUSG00000036291	Ap5m1	4932432K03Rik|Mu5|Mudeng	adaptor-related protein complex 5, mu 1 subunit	protein-coding	71.5	223.0	213.0	89.0	281.0	121.5
Merged-chr2-128422867-4	chr2	128422371	128423371	+	952.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	B3A|SINE|B2	6480.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	4.5	16.5	12.5	4.5	16.0	8.5
Merged-chr6-50303721-4	chr6	50303218	50304218	+	952.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027881, intron 18 of 21)	L1MA8|LINE|L1	-41949.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147871672-4	chr5	147871162	147872162	+	952.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025624, intron 4 of 5)	intron (NM_025624, intron 4 of 5)	11034.0	NM_025624	66537.0	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111337772-7	chr8	111337297	111338297	+	952.7023929999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310613, intron 1 of 10)	intron (NM_001310613, intron 1 of 10)	408.0	NM_001310613	74568.0	Mm.207971	NM_029005	ENSMUSG00000012519	Mlkl	9130019I15Rik	mixed lineage kinase domain-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136139640-2	chr4	136139140	136140140	+	952.7000119999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-4182.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	2.5	5.0	1.5	0.0	12.5	1.0
Merged-chr2-3323342-4	chr2	3322846	3323846	+	952.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008708, intron 11 of 13)	intron (NM_008708, intron 11 of 13)	9282.0	NM_001013376	227522.0	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97842937-4	chr7	97842458	97843458	+	952.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011035)	promoter-TSS (NM_011035)	19.0	NM_011035	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	25.0	39.5	46.0	12.5	26.0	20.0
Merged-chr4-32545643-3	chr4	32545076	32546076	+	952.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109661, intron 2 of 4)	MTE2b|LTR|ERVL-MaLR	26086.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150397475-4	chr4	150396982	150397982	+	952.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 1 of 22)	intron (NM_001085492, intron 1 of 22)	115566.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	1.0	3.5	8.0	11.0	10.5	3.5
Merged-chr9-99560542-2	chr9	99560042	99561042	+	952.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_028768, intron 1 of 21)	B1F2|SINE|Alu	8357.0	NM_001166138	74125.0	Mm.234823	NM_028768	ENSMUSG00000032468	Armc8	1200015K23Rik|Gid5|HSPC056	armadillo repeat containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-10556780-2	chr10	10556280	10557280	+	952.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_026405, intron 1 of 2)	intron (NM_026405, intron 1 of 2)	1427.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65533193-4	chr3	65532659	65533659	+	952.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178892, intron 2 of 5)	intron (NM_178892, intron 2 of 5)	-3745.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	12.5	39.0	33.0	13.5	40.0	28.0
Merged-chr1-93013627-3	chr1	93013125	93014125	+	952.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7291.0	NM_177587	208760.0	Mm.235537	NM_177587	ENSMUSG00000045091	Aqp12	AB084104|mAQP12	aquaporin 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-150165846-4	chr1	150165342	150166342	+	952.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110420)	promoter-TSS (NR_110420)	-894.0	NR_110420	102639566.0	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53921624-4	chr18	53921215	53922215	+	952.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152809, intron 6 of 12)	intron (NM_152809, intron 6 of 12)	59602.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	62.5	110.0	85.0	57.0	97.5	50.5
Merged-chr18-5805777-4	chr18	5805257	5806257	+	952.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AmnSINE2|SINE|Deu	213110.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	32.0	18.0	20.0	28.5	67.0	40.5
Merged-chr1-179507173-2	chr1	179506673	179507673	+	952.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_027188, intron 1 of 11)	B2_Mm2|SINE|B2	10868.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100747162-3	chr15	100746660	100747660	+	952.666626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-14423.0	NR_045782	619313.0	Mm.123436	NR_045781	ENSMUSG00000116504	I730030J21Rik	-	RIKEN cDNA I730030J21 gene	ncRNA	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr17-34954804-2	chr17	34954304	34955304	+	952.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2333.0	NR_015536	68763.0	Mm.28895	NR_015536	ENSMUSG00000092203	1110038B12Rik	0610009C20Rik|0910001G04Rik	RIKEN cDNA 1110038B12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-85716197-2	chr15	85715697	85716697	+	952.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8878.0	NR_029727	387245.0		NR_029727	ENSMUSG00000065564	Mirlet7b	Mirnlet7b|let-7b|mmu-let-7b	microRNA let7b	ncRNA	0.0	0.0	6.0	3.5	0.0	2.0
Merged-chr6-39377613-4	chr6	39377083	39378083	+	952.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155076)	promoter-TSS (NR_155076)	124.0	NM_001361619	72144.0	Mm.482167	NM_028123	ENSMUSG00000029924	Slc37a3	2610507O21Rik|AU044904	solute carrier family 37 (glycerol-3-phosphate transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-83524334-3	chr13	83523812	83524812	+	952.638855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347568)	promoter-TSS (NM_001347568)	-431.0	NM_001347567	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr13-52595010-4	chr13	52594508	52595508	+	952.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198977, intron 1 of 13)	intron (NM_001198977, intron 1 of 13)	-1874.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	4.5	5.5	6.0	3.0	1.0	2.0
Merged-chr13-21714928-4	chr13	21714420	21715420	+	952.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178199)	TTS (NM_178199)	1223.0	NM_178199	319185.0		NM_178199	ENSMUSG00000094338	Hist1h2bl	H2b-291a	histone cluster 1, H2bl	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27057116-4	chr17	27056634	27057634	+	952.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080553)	promoter-TSS (NM_080553)	-170.0	NM_080553	16440.0	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100557215-4	chr5	100556720	100557720	+	952.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139198, intron 3 of 4)	intron (NM_139198, intron 3 of 4)	14985.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	17.0	47.5	27.0	6.0	5.0	2.0
Merged-chr1-23259841-4	chr1	23259335	23260335	+	952.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12434.0	NR_029533	387225.0		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32225336-3	chr19	32224830	32225830	+	952.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 4 of 9)	intron (NM_144792, intron 4 of 9)	-14317.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38382721-4	chr15	38382167	38383167	+	952.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie15a|DNA|hAT-Charlie	-81956.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97995943-4	chr6	97995446	97996446	+	952.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001178049, intron 4 of 9)	intron (NM_001178049, intron 4 of 9)	4163.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73764644-2	chr13	73764144	73765144	+	952.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 1 of 24)	intron (NM_001360694, intron 1 of 24)	947.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60280052-4	chr10	60279568	60280568	+	952.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011179, intron 1 of 14)	B4A|SINE|B4	2440.0	NM_001146121	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6223242-3	chr4	6222740	6223740	+	952.5833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32135.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	33.5	64.5	65.5	7.0	16.5	12.5
Merged-chr6-125071887-4	chr6	125071383	125072383	+	952.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163268, intron 1 of 1)	intron (NM_001163268, intron 1 of 1)	606.0	NM_001163268	381810.0	Mm.333386	NM_001163268	ENSMUSG00000067714	Lpar5	GPR93|Gm1072|Gpr92|LPA5	lysophosphatidic acid receptor 5	protein-coding	10.0	42.0	39.5	21.0	41.5	28.5
Merged-chr11-57934494-4	chr11	57934014	57935014	+	952.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74550.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	4.5	0.0	0.0	1.0	2.0	1.5
Merged-chr12-112875762-4	chr12	112875271	112876271	+	952.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14855.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129791200-3	chr4	129790692	129791692	+	952.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29287.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	4.5	24.5	18.5	49.0	57.0	30.0
Merged-chr5-29843008-3	chr5	29842504	29843504	+	952.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107068.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-9907692-3	chr10	9907175	9908175	+	952.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6635.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61367805-3	chr9	61367313	61368313	+	952.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4553.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47727267-4	chr9	47726734	47727734	+	952.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	90974.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	51.0	127.5	65.5	62.5	123.5	75.5
Merged-chr5-35670672-4	chr5	35670172	35671172	+	952.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042615, intron 2 of 6)	intron (NM_001042615, intron 2 of 6)	9108.0	NM_001042615	78558.0	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-74949086-4	chr14	74948600	74949600	+	952.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1223.0	NM_001033439	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81862101-3	chr7	81861587	81862587	+	952.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291282)	promoter-TSS (NM_001291282)	-600.0	NM_001291282	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	4.5	12.0	10.5	11.0	14.0	10.5
Merged-chr7-129859860-3	chr7	129859364	129860364	+	952.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102301.0	NR_046077	100043150.0	Mm.334264	NR_046077	ENSMUSG00000108504	Gm4265	-	predicted gene 4265	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57057104-2	chr17	57056604	57057604	+	952.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025877, intron 2 of 9)	intron (NM_025877, intron 2 of 9)	2759.0	NM_025877	66972.0	Mm.23720	NM_025877	ENSMUSG00000046329	Slc25a23	2310067G05Rik|SCaMC-3	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97205759-2	chr3	97205259	97206259	+	952.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029933, exon 10 of 10)	exon (NM_029933, exon 10 of 10)	21605.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135960005-2	chr5	135959499	135960499	+	952.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001160366)	TTS (NM_001160366)	14477.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	0.0	0.0	2.5	15.0	4.0	4.5
Merged-chr3-97948830-2	chr3	97948330	97949330	+	952.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033779, intron 1 of 1)	intron (NM_001033779, intron 1 of 1)	18657.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81049822-2	chr15	81049322	81050322	+	952.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	B3|SINE|B2	55225.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	1.5	0.0	2.5	1.5	0.0	2.5
Merged-chr17-57013363-2	chr17	57012863	57013863	+	952.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2075.0	NM_133801	98053.0	Mm.24632	NM_133801	ENSMUSG00000002658	Gtf2f1	2810405L04Rik|C76800|RAP74	general transcription factor IIF, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-85131854-2	chr6	85131354	85132354	+	952.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5760.0	NM_001034902	545861.0	Mm.321419	NM_001034902	ENSMUSG00000072952	Gm5878	EG545861	predicted gene 5878	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53821776-2	chr11	53821276	53822276	+	952.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 2 of 3)	intron (NR_033332, intron 2 of 3)	37480.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19630158-2	chr7	19629658	19630658	+	952.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009046)	promoter-TSS (NM_009046)	-720.0	NM_009046	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74808534-4	chr17	74808031	74809031	+	952.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152817, intron 13 of 19)	intron (NM_152817, intron 13 of 19)	90781.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	1.0	5.5	3.5	2.0	0.0	0.0
Merged-chr15-53413631-2	chr15	53413131	53414131	+	952.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-67448.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80507555-2	chr10	80507055	80508055	+	952.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139226, intron 1 of 1)	intron (NM_139226, intron 1 of 1)	12649.0	NM_139226	246086.0	Mm.250572	NM_139226	ENSMUSG00000045518	Onecut3	OC-3|Oc3	one cut domain, family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-28350281-4	chr3	28349777	28350777	+	952.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026910, intron 1 of 32)	intron (NM_026910, intron 1 of 32)	-69666.0	NR_130342	100628591.0		NR_130342	ENSMUSG00000092990	Mir466q	Mir446q|mmu-mir-466q|mu-mir-446q	microRNA 466q	ncRNA	9.5	16.0	48.0	3.0	0.0	1.5
Merged-chr9-63719729-2	chr9	63719229	63720229	+	952.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	MIRc|SINE|MIR	38265.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161443883-4	chr1	161443352	161444352	+	952.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48414.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	0.0	1.0	2.5	1.0	5.0	0.0
Merged-chr16-22313812-2	chr16	22313312	22314312	+	952.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18824.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-103347193-4	chr9	103346649	103347649	+	952.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176979, intron 27 of 27)	RSINE1|SINE|B4	17830.0	NM_001134427	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	1.0	33.5	15.0	12.5	7.5	0.5
Merged-chr18-11027678-2	chr18	11027178	11028178	+	952.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-24832.0	NM_010258	14465.0	Mm.329287	NM_010258	ENSMUSG00000005836	Gata6	AA410133|GATA-6	GATA binding protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11342897-2	chr8	11342397	11343397	+	952.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009932, intron 3 of 47)	intron (NM_009932, intron 3 of 47)	-30071.0	NM_009931	12826.0	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-58830605-2	chr7	58830105	58831105	+	952.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	172403.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70791186-2	chr11	70790686	70791686	+	952.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001045526, exon 5 of 5)	3' UTR (NM_001045526, exon 5 of 5)	21375.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115939816-2	chr11	115939316	115940316	+	952.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020483, intron 3 of 10)	intron (NM_020483, intron 3 of 10)	6157.0	NM_020483	57230.0	Mm.267810	NM_020483	ENSMUSG00000020755	Sap30bp	2700016D05Rik|Hcngp	SAP30 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101083537-2	chr13	101083037	101084037	+	952.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-148590.0	NR_046158	328324.0	Mm.402274	NR_046158	ENSMUSG00000114590	5930438M14Rik	5930438M14	RIKEN cDNA 5930438M14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122683244-2	chr10	122682848	122683848	+	952.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	4033.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0.0	0.5	0.5	0.0	0.0	0.0
Merged-chr2-102741878-4	chr2	102741381	102742381	+	952.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077514, intron 4 of 10)	intron (NM_001077514, intron 4 of 10)	4879.0	NR_153852	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-33460510-2	chr4	33460010	33461010	+	952.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305273, intron 14 of 15)	intron (NM_001305273, intron 14 of 15)	22429.0	NR_106198	102465904.0		NR_106198	ENSMUSG00000098310	Mir8118	Gm27954|mmu-mir-8118	microRNA 8118	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129876730-2	chr4	129876230	129877230	+	952.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29496.0	NR_045190	319894.0	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	25.0	79.0	74.0	43.0	35.5	55.5
Merged-chr4-147908507-2	chr4	147908007	147909007	+	952.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-3598.0	NM_001285921	170731.0	Mm.154312	NM_133201	ENSMUSG00000029020	Mfn2	D630023P19Rik|Fzo	mitofusin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-144895985-3	chr7	144895470	144896470	+	952.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008003)	promoter-TSS (NM_008003)	-562.0	NM_008003	14170.0	Mm.3904	NM_008003	ENSMUSG00000031073	Fgf15	FGF19	fibroblast growth factor 15	protein-coding	0.0	1.0	1.0	0.0	7.5	0.5
Merged-chr6-16857235-3	chr6	16856733	16857733	+	952.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 2 of 6)	intron (NM_031198, intron 2 of 6)	41208.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146438236-3	chr6	146437757	146438757	+	952.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 2 of 56)	intron (NM_019923, intron 2 of 56)	63966.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	10.0	11.5	10.0	0.0	0.5	0.5
Merged-chr1-88582021-2	chr1	88581521	88582521	+	952.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30504.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21982393-2	chr14	21981893	21982893	+	952.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7208.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-133130042-4	chr1	133129539	133130539	+	952.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1127.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	94.0	183.5	99.5	50.0	195.0	160.5
Merged-chr11-102437772-4	chr11	102437254	102438254	+	952.4750369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008175)	TTS (NM_008175)	7432.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.5	11.0	1.5	1.0	1.0	0.0
Merged-chr5-16973562-6	chr5	16973149	16974149	+	952.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	419748.0	NM_001289461	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3503957-4	chr5	3503465	3504465	+	952.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-39868.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61052380-4	chr14	61051874	61052874	+	952.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1-int|LTR|ERVL-MaLR	-5519.0	NM_013869	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40430775-4	chr12	40430266	40431266	+	952.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172575, intron 1 of 12)	intron (NM_172575, intron 1 of 12)	15024.0	NM_172575	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165948232-4	chr2	165947758	165948758	+	952.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44379.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	88.0	249.5	166.5	68.0	195.0	149.5
Merged-chr10-13961666-4	chr10	13961170	13962170	+	952.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-4405.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	4.0	4.0	4.0	3.0	8.0	4.5
Merged-chr15-79757284-4	chr15	79756792	79757792	+	952.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045069, exon 4 of 4)	non-coding (NR_045069, exon 4 of 4)	14594.0	NR_045069	100504191.0	Mm.421420	NR_045069	ENSMUSG00000087543	Gm16576	-	predicted gene 16576	ncRNA	2.5	28.0	15.0	11.5	16.5	19.5
Merged-chr12-105821471-3	chr12	105820960	105821960	+	952.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011112, intron 15 of 21)	intron (NM_011112, intron 15 of 21)	36763.0	NM_001347440	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	5.5	6.5	4.5	0.0	4.0	5.5
Merged-chr18-84848687-3	chr18	84848189	84849189	+	952.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD2|LINE|L1	-2649.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75032013-3	chr11	75031495	75032495	+	952.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 10 of 18)	intron (NM_001002764, intron 10 of 18)	33996.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35117170-3	chr7	35116646	35117646	+	952.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2147.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	0.0	0.5	6.0	0.5	9.5	9.0
Merged-chr10-105273327-4	chr10	105272795	105273795	+	952.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177368, intron 8 of 11)	intron (NM_177368, intron 8 of 11)	301184.0	NM_177368	278279.0	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	9.0	25.0	8.5	19.0	19.0	31.5
Merged-chr3-27283547-4	chr3	27283062	27284062	+	952.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33515.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65535574-4	chr5	65535095	65536095	+	952.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1650.0	NM_016786	53323.0	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37504453-4	chr19	37503957	37504957	+	952.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	39203.0	NR_131009	78640.0	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-52418733-4	chr10	52418258	52419258	+	952.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030250, intron 1 of 4)	intron (NM_030250, intron 1 of 4)	1211.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148772968-4	chr4	148772458	148773458	+	952.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-31434.0	NM_001159344	69743.0	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr11-88235583-4	chr11	88235089	88236089	+	952.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	31201.0	NM_001291271	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	4.0	20.0	17.5	11.0	0.0	6.0
Merged-chr2-11553063-4	chr2	11552548	11553548	+	952.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	881.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-30712676-4	chr10	30712180	30713180	+	952.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 3 of 14)	intron (NM_001358842, intron 3 of 14)	-56813.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17612834-4	chr6	17612313	17613313	+	952.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24197.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90783871-4	chr5	90783384	90784384	+	952.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2217.0	NM_203320	330122.0	Mm.244289	NM_203320	ENSMUSG00000029379	Cxcl3	Dcip1|Gm1960	chemokine (C-X-C motif) ligand 3	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr7-25219203-4	chr7	25218714	25219714	+	952.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207677, intron 1 of 4)	CpG	645.0	NM_207677	67379.0	Mm.280594	NM_026117	ENSMUSG00000054499	Dedd2	2410050E11Rik|FLAME-3	death effector domain-containing DNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-99041210-5	chr11	99040753	99041753	+	952.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010517)	promoter-TSS (NM_010517)	9.0	NM_010517	16010.0	Mm.233799	NM_010517	ENSMUSG00000017493	Igfbp4	AI875747|Deb2|IBP-4|IGFBP-4	insulin-like growth factor binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81848501-4	chr15	81848007	81849007	+	952.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_020507, exon 2 of 2)	3' UTR (NM_020507, exon 2 of 2)	9819.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70777394-4	chr11	70776884	70777884	+	952.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12937.0	NM_177565	193043.0	Mm.40966	NM_177565	ENSMUSG00000043602	Zfp3	AI854635|B230309J24|Fnp-1|Zfp-3	zinc finger protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-48823803-4	chr11	48823301	48824301	+	952.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Val-GTY|tRNA|tRNA	-2337.0	NM_053166	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-89145586-4	chr4	89145055	89146055	+	952.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024433, intron 1 of 7)	intron (NM_024433, intron 1 of 7)	8185.0	NM_024433	66902.0	Mm.28500	NM_024433	ENSMUSG00000062937	Mtap	1300019I21Rik|MSAP	methylthioadenosine phosphorylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11929573-4	chr4	11929069	11930069	+	952.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36144.0	NM_001098231	381511.0	Mm.331489	NM_001033453	ENSMUSG00000049225	Pdp1	Gm1024|Ppm2c	pyruvate dehyrogenase phosphatase catalytic subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102290234-4	chr2	102289721	102290721	+	952.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103761.0	NM_001290784	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99382656-2	chr7	99382156	99383156	+	952.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_201352, intron 1 of 17)	intron (NM_201352, intron 1 of 17)	1138.0	NM_001362166	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	0.0	0.0	2.0	1.5	0.0	0.5
Merged-chr8-88635616-1	chr8	88635116	88636116	+	952.3333130000001	f1_c57bl6.idr	intron (NM_027840, intron 1 of 3)	intron (NM_027840, intron 1 of 3)	512.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	138.5	298.5	243.5	46.0	129.0	90.5
Merged-chr12-100440282-3	chr12	100439771	100440771	+	952.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 5 of 19)	intron (NM_001033213, intron 5 of 19)	80551.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150473775-4	chr4	150473176	150474176	+	952.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 6 of 22)	intron (NM_001085492, intron 6 of 22)	178498.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72364284-2	chr6	72363784	72364784	+	952.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331167, intron 1 of 5)	B2_Mm2|SINE|B2	-1852.0	NM_001331173	66510.0	Mm.170023	NM_025607	ENSMUSG00000055850	Rnf181	1700047F16Rik|2500002L14Rik|6230415N01Rik|C77350	ring finger protein 181	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122379965-4	chr5	122379471	122380471	+	952.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024216, intron 3 of 7)	intron (NM_024216, intron 3 of 7)	7463.0	NM_024216	68080.0	Mm.266328	NM_024216	ENSMUSG00000029464	Gpn3	A930018B01Rik|Atpbd1c|D5Ertd708e	GPN-loop GTPase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-90224307-3	chr11	90223774	90224774	+	952.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-25202.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95525141-4	chr10	95524627	95525627	+	952.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080560, intron 1 of 3)	intron (NM_080560, intron 1 of 3)	9965.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-31105336-4	chr7	31104880	31105880	+	952.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110252, intron 5 of 13)	intron (NM_001110252, intron 5 of 13)	5617.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	6.5	27.5	22.0	3.0	10.0	13.5
Merged-chr7-75501001-4	chr7	75500512	75501512	+	952.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 1 of 36)	MTE2a|LTR|ERVL-MaLR	45478.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73554347-4	chr12	73553824	73554824	+	952.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5841.0	NR_044985	73644.0	Mm.369885	NR_044985	ENSMUSG00000113800	2210039B01Rik	-	RIKEN cDNA 2210039B01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115297606-4	chr11	115297098	115298098	+	952.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178035)	promoter-TSS (NM_178035)	-52.0	NM_178035	328035.0	Mm.21995	NM_178035	ENSMUSG00000044788	Fads6	BC044804	fatty acid desaturase domain family, member 6	protein-coding	0.0	0.0	3.5	0.0	0.0	0.0
Merged-chr15-38710971-4	chr15	38710460	38711460	+	952.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17556.0	NR_131206	105463124.0	Mm.432448	NR_131206	ENSMUSG00000115620	Gm45924	Borg	predicted gene, 45924	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108825152-4	chr6	108824618	108825618	+	952.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3523.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	17.5	29.0	10.5	17.0	28.5	9.5
Merged-chr6-29279181-4	chr6	29278693	29279693	+	952.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1948.0	NM_001101486	245884.0	Mm.33683	NM_001101486	ENSMUSG00000079652	Fam71f2	AI507611|GARI	family with sequence similarity 71, member F2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119269261-3	chr11	119268790	119269790	+	952.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008064, intron 1 of 19)	MER21C|LTR|ERVL	1327.0	NM_008064	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	37.5	55.0	71.5	48.0	94.5	100.5
Merged-chr16-36665133-6	chr16	36664563	36665563	+	952.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	1014.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81257401-4	chr10	81256853	81257853	+	952.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285854)	promoter-TSS (NM_001285854)	54.0	NM_001285853	17179.0	Mm.2918	NM_010768	ENSMUSG00000004933	Matk	CHK|HYL|Ntk|p56ntk	megakaryocyte-associated tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-44047979-4	chr14	44047419	44048419	+	952.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41501.0	NM_001011876	630952.0		NM_001011876	ENSMUSG00000072598	Ang6	EG630952	angiogenin, ribonuclease A family, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98943537-4	chr11	98943018	98944018	+	952.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177303, intron 1 of 8)	intron (NM_001177303, intron 1 of 8)	3807.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-62711187-4	chr5	62710686	62711686	+	952.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 7 of 32)	intron (NM_178407, intron 7 of 32)	54991.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17275416-4	chr10	17274915	17275915	+	952.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-179633.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0.0	0.5	2.0	3.0	5.0	5.0
Merged-chr10-41958847-4	chr10	41958334	41959334	+	952.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 10 of 17)	intron (NM_001034858, intron 10 of 17)	59548.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57705878-4	chr15	57705365	57706365	+	952.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 1 of 3)	intron (NM_199449, intron 1 of 3)	11198.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105265418-4	chr8	105264918	105265918	+	952.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033161)	promoter-TSS (NM_001033161)	770.0	NM_015821	50788.0	Mm.334764	NM_015821	ENSMUSG00000033313	Fbxl8	FBL8	F-box and leucine-rich repeat protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-73752199-4	chr18	73751692	73752692	+	952.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053255, intron 1 of 3)	intron (NM_053255, intron 1 of 3)	2287.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	70.0	138.0	139.0	49.0	116.5	83.0
Merged-chr10-81377123-2	chr10	81376623	81377623	+	952.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_019757, intron 1 of 13)	intron (NM_019757, intron 1 of 13)	1247.0	NM_019757	56371.0	Mm.24202	NM_019757	ENSMUSG00000020235	Fzr1	AW108046|Cdh1|FZR|FZR2|Fyr|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42245081-4	chr10	42244580	42245580	+	952.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	31662.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51223905-2	chr3	51223405	51224405	+	952.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009834)	promoter-TSS (NM_009834)	-542.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96173117-4	chr10	96172603	96173603	+	952.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53104.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-77905533-4	chr14	77905051	77906051	+	952.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029495, intron 1 of 11)	intron (NM_029495, intron 1 of 11)	1312.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	2.0	9.0	8.0	2.0	8.5	6.0
Merged-chr17-28375746-2	chr17	28375246	28376246	+	952.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10530.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125167236-2	chr6	125166736	125167736	+	952.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289726)	promoter-TSS (NM_001289726)	-769.0	NM_001289726	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	24.0	43.5	38.5	9.5	24.5	27.0
Merged-chr10-61068590-2	chr10	61068090	61069090	+	952.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20741.0	NM_025273	13180.0	Mm.39473	NM_025273	ENSMUSG00000020098	Pcbd1	Dcoh|Pcbd|Pcd|Phs	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89089570-2	chr15	89089070	89090070	+	952.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_027905, exon 1 of 9)	exon (NM_027905, exon 1 of 9)	532.0	NM_027905	223776.0	Mm.44763	NM_027905	ENSMUSG00000035757	Selenoo	1300018J18Rik|Selo	selenoprotein O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-106770976-4	chr4	106770509	106771509	+	952.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025590, intron 2 of 15)	intron (NM_025590, intron 2 of 15)	28822.0	NM_025590	329910.0	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	0.0	10.5	5.0	0.5	2.0	0.5
Merged-chr15-102471775-4	chr15	102471271	102472271	+	952.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001174073, intron 1 of 12)	intron (NM_001174073, intron 1 of 12)	1139.0	NM_001174073	18521.0	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114838111-4	chr6	114837621	114838621	+	952.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 19 of 19)	MTD|LTR|ERVL-MaLR	83700.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21711058-4	chr13	21710565	21711565	+	952.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Met-i|tRNA|tRNA	5078.0	NM_178199	319185.0		NM_178199	ENSMUSG00000094338	Hist1h2bl	H2b-291a	histone cluster 1, H2bl	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139734975-4	chr5	139734481	139735481	+	952.212524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174850, intron 1 of 16)	intron (NM_174850, intron 1 of 16)	1352.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	7.0	17.0	17.5	8.0	25.0	17.5
Merged-chr14-79511770-4	chr14	79511276	79512276	+	952.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 1 of 8)	ORR1E|LTR|ERVL-MaLR	-3898.0	NM_001286412	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-107564841-4	chr1	107564351	107565351	+	952.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_B|LTR|ERVK	-25155.0	NM_011459	20725.0	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16019629-4	chr7	16019107	16020107	+	952.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	-20112.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	6.0	7.5	1.5	9.0	18.0	8.5
Merged-chr10-57570466-4	chr10	57570008	57571008	+	952.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-37979.0	NM_019760	56442.0	Mm.29344	NM_019760	ENSMUSG00000019877	Serinc1	1500011D18Rik|AI315070|AIGP-2|TMS-2|Tde1l|Tde2|Tms2|mKIAA1253	serine incorporator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8964990-4	chr3	8964507	8965507	+	952.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025261)	promoter-TSS (NM_001025261)	-861.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-128643676-4	chr1	128643147	128644147	+	952.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51348.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	6.5	21.0	5.0	15.5	15.5	9.5
Merged-chr3-41405025-4	chr3	41404518	41405518	+	952.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88181.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100848218-4	chr11	100847677	100848677	+	952.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113563, intron 1 of 18)	intron (NM_001113563, intron 1 of 18)	2408.0	NM_001113563	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141514465-4	chr4	141513958	141514958	+	952.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347235, intron 3 of 14)	intron (NM_001347235, intron 3 of 14)	24139.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	46.0	211.5	105.0	14.5	27.5	25.0
Merged-chr19-10949785-4	chr19	10949275	10950275	+	952.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023731)	promoter-TSS (NM_023731)	-509.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69580839-3	chr11	69580397	69581397	+	952.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127233, intron 1 of 10)	intron (NM_001127233, intron 1 of 10)	538.0	NM_001127233	22059.0	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46479761-2	chr19	46479261	46480261	+	952.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 10 of 11)	intron (NM_001025391, intron 10 of 11)	-21887.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-68692156-3	chr18	68691666	68692666	+	952.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-47234.0	NR_105774	102465183.0		NR_105774	ENSMUSG00000099300	Mir6356	Gm27461|mmu-mir-6356	microRNA 6356	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-53200706-4	chr2	53200194	53201194	+	952.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022989, intron 2 of 3)	intron (NM_022989, intron 2 of 3)	8610.0	NM_022989	65103.0	Mm.37623	NM_022989	ENSMUSG00000026960	Arl6ip6	2310057C01Rik|2610529A11Rik|Aip-6	ADP-ribosylation factor-like 6 interacting protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81024041-4	chr15	81023553	81024553	+	952.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 4 of 13)	intron (NM_001082536, intron 4 of 13)	46288.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155122856-3	chr4	155122380	155123380	+	952.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356327, intron 10 of 12)	intron (NM_001356327, intron 10 of 12)	36276.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73039291-2	chr17	73038795	73039795	+	952.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68690.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	7.5	13.0	9.5	7.5	10.0	8.5
Merged-chr3-31149787-2	chr3	31149287	31150287	+	952.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008770)	promoter-TSS (NM_008770)	-133.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46497713-4	chr4	46497216	46498216	+	952.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053179, intron 2 of 5)	intron (NM_053179, intron 2 of 5)	8387.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-42987582-4	chr4	42987091	42988091	+	952.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009503, intron 7 of 16)	RLTR12B|LTR|ERVK	12916.0	NM_009503	269523.0	Mm.245976	NM_009503	ENSMUSG00000028452	Vcp	3110001E05|CDC48|p97|p97/VCP	valosin containing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19821495-2	chr7	19820995	19821995	+	952.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_033601, intron 1 of 8)	intron (NM_033601, intron 1 of 8)	1260.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-65794535-4	chr11	65794014	65795014	+	952.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6155.0	NM_001316367	26398.0	Mm.412922	NM_009157	ENSMUSG00000033352	Map2k4	JNKK1|MEK4|MKK4|PRKMK4|Sek1|Serk1	mitogen-activated protein kinase kinase 4	protein-coding	1.0	0.0	6.0	1.0	1.0	0.5
Merged-chr10-61492269-4	chr10	61491783	61492783	+	952.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153542, intron 2 of 4)	intron (NM_153542, intron 2 of 4)	16450.0	NM_153542	216011.0	Mm.136116	NM_153542	ENSMUSG00000037151	Lrrc20	BC036304	leucine rich repeat containing 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-39777339-7	chr15	39776796	39777796	+	952.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022722, intron 9 of 9)	intron (NM_022722, intron 9 of 9)	-19749.0	NR_045788	100503072.0	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	-	predicted gene 16291	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-34683612-4	chr12	34683116	34684116	+	952.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-154727.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	31.5	11.0	14.0	14.0	28.0	16.0
Merged-chr15-90678691-4	chr15	90678194	90679194	+	952.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033851, intron 1 of 3)	intron (NM_001033851, intron 1 of 3)	694.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	1.0	14.0	7.0	0.5	0.5	2.5
Merged-chr3-9128584-3	chr3	9128066	9129066	+	952.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66602.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63974850-3	chr9	63974339	63975339	+	952.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	47220.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23751740-3	chr18	23751250	23752250	+	952.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162942)	promoter-TSS (NM_001162942)	555.0	NR_126066	100502834.0	Mm.213614	NR_126066	ENSMUSG00000086287	Gm15972	-	predicted gene 15972	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-142339186-4	chr6	142338690	142339690	+	952.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6507.0	NM_183165	232491.0	Mm.490474	NM_183165	ENSMUSG00000041671	Pyroxd1	-	pyridine nucleotide-disulphide oxidoreductase domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14837779-4	chr8	14837262	14838262	+	952.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 13 of 15)	intron (NM_172910, intron 13 of 15)	-50774.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-34551362-7	chr4	34550872	34551872	+	952.0979609999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007589, intron 1 of 4)	intron (NM_001007589, intron 1 of 4)	757.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57353866-4	chr16	57353365	57354365	+	952.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	588.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	2.0	3.0	3.0	5.5	0.5	0.0
Merged-chr4-55476410-2	chr4	55475916	55476916	+	952.083374	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	56059.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.0	0.0	4.0	3.0	0.0	2.0
Merged-chr2-130750704-4	chr2	130750204	130751204	+	952.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029432, intron 20 of 36)	RMER10A|LTR|ERVL	-53185.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	3.0	6.5	7.5	4.0	4.5	1.5
Merged-chr6-88904955-8	chr6	88904472	88905472	+	952.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011906, intron 1 of 11)	intron (NM_011906, intron 1 of 11)	2721.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99266508-4	chr5	99266007	99267007	+	952.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13580.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	35.5	58.0	40.5	28.0	48.5	18.5
Merged-chr12-112631012-3	chr12	112630519	112631519	+	952.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 2 of 12)	MTD|LTR|ERVL-MaLR	10972.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122145546-4	chr5	122145052	122146052	+	952.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7490.0	NM_183307	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	9.0	62.5	45.5	8.0	30.0	32.5
Merged-chr11-43632764-4	chr11	43632246	43633246	+	952.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31184.0	NM_008375	16204.0	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	21.0	50.0	29.5	48.0	77.0	58.5
Merged-chr9-13774900-4	chr9	13774403	13775403	+	952.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_024025, intron 1 of 15)	RodERV21-int|LTR|ERV1	25722.0	NM_023858	77116.0	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-10835279-4	chr8	10834823	10835823	+	952.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47131.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70695891-4	chr8	70695421	70696421	+	952.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1818.0	NM_010592	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	75.5	139.5	104.0	50.0	234.0	125.5
Merged-chr1-35971610-4	chr1	35971117	35972117	+	952.0125119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-96783.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53827003-4	chr4	53826506	53827506	+	952.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028053, intron 1 of 5)	Charlie1b|DNA|hAT-Charlie	961.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-29903631-3	chr16	29903135	29904135	+	952.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75489.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88145441-2	chr3	88144941	88145941	+	952.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	3069.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60375868-2	chr18	60375368	60376368	+	952.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146275)	promoter-TSS (NM_001146275)	-161.0	NM_001146275	60440.0	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64087717-4	chr9	64087215	64088215	+	952.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040743, intron 2 of 2)	intron (NR_040743, intron 2 of 2)	6954.0	NR_040743	76814.0	Mm.243771	NR_040743		Scarletltr	2600006L11Rik	Scarletltr, erythroid developmental long intergenic non-protein coding transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88127924-1	chr15	88127424	88128424	+	952.0	f1_balb.idr	Intergenic	Intergenic	-186950.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	1.5	0.0	6.0	180.0	306.0	238.0
Merged-chr11-68637308-2	chr11	68636808	68637808	+	952.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	50271.0	NM_177779	276920.0	Mm.123046	NM_177779	ENSMUSG00000045915	Ccdc42	A530001H01Rik	coiled-coil domain containing 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-174434825-2	chr2	174434325	174435325	+	952.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022325, intron 2 of 5)	intron (NM_022325, intron 2 of 5)	4214.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165300562-3	chr2	165300049	165301049	+	952.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302754, intron 9 of 19)	intron (NM_001302754, intron 9 of 19)	-12711.0	NR_045544	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	0.0	2.5	3.5	0.0	1.5	0.0
Merged-chr2-129303398-2	chr2	129302898	129303898	+	952.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010554, intron 5 of 6)	(TC)n|Simple_repeat|Simple_repeat	6028.0	NR_040371	100503468.0	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	-	predicted gene 14023	ncRNA	34.5	32.0	19.0	12.0	17.0	10.0
Merged-chr10-19098963-5	chr10	19098537	19099537	+	952.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42712.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	44.0	77.0	42.5	23.5	62.5	42.5
Merged-chr7-27590219-2	chr7	27589719	27590719	+	952.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1333.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-145691657-3	chr3	145691152	145692152	+	952.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3b|LINE|CR1	-41667.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81127768-3	chr10	81127259	81128259	+	952.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8512.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130221243-2	chr5	130220743	130221743	+	952.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081394, intron 1 of 6)	RMER15|LTR|ERVL	-1092.0	NM_027854	71667.0	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	0.0	0.0	0.0	1.5	5.0	0.5
Merged-chr15-66846120-4	chr15	66845613	66846613	+	952.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 45 of 47)	intron (NM_009375, intron 45 of 47)	-14284.0	NM_009192	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32191152-4	chr12	32190655	32191655	+	952.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020272, intron 10 of 10)	intron (NM_020272, intron 10 of 10)	17183.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	5.5	5.5	8.0	0.0	5.0	7.0
Merged-chr5-96179253-2	chr5	96178753	96179753	+	952.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-17263.0	NM_144910	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72597196-2	chr6	72596696	72597696	+	952.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144917, intron 1 of 12)	intron (NM_144917, intron 1 of 12)	1217.0	NM_144917	232089.0	Mm.167232	NM_144917	ENSMUSG00000056698	Elmod3	AI844780|C330008I15Rik|RBM29|Rbed1	ELMO/CED-12 domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-130900813-2	chr7	130900313	130901313	+	952.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133942, intron 5 of 9)	intron (NM_133942, intron 5 of 9)	-7455.0	NR_106028	102466219.0		NR_106028	ENSMUSG00000104914	Mir7061	mmu-mir-7061	microRNA 7061	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35378667-2	chr17	35378164	35379164	+	952.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001143689)	promoter-TSS (NM_001143689)	-953.0	NM_001143689	15015.0	Mm.464284	NM_001143689	ENSMUSG00000035929	H2-Q4	H-2Q4|H2-Gs10|Qa-4|Qa4|Qat-4|Qb-1|Qb1	histocompatibility 2, Q region locus 4	protein-coding	6.5	2.0	10.0	0.0	1.0	12.0
Merged-chr5-59723110-2	chr5	59722610	59723610	+	952.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	262892.0	NR_040683	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70499452-2	chr8	70498952	70499952	+	952.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_018827, exon 4 of 9)	exon (NM_018827, exon 4 of 9)	6321.0	NM_018827	12931.0	Mm.335584	NM_018827	ENSMUSG00000007888	Crlf1	CLF-1|CRLM-3|CRLM3|NR6|NR6.1	cytokine receptor-like factor 1	protein-coding	0.0	0.0	2.5	0.0	0.0	1.5
Merged-chr3-90494960-2	chr3	90494460	90495460	+	952.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3947.0	NM_133854	20615.0	Mm.331182	NM_133854	ENSMUSG00000001018	Snapin	25kDa|AA407989|AV026596|Bloc1s7|Snap25bp|Snapap	SNAP-associated protein	protein-coding	2.0	3.0	4.0	0.0	2.5	2.5
Merged-chr6-108874615-2	chr6	108874072	108875072	+	952.0	f0_balb.idr|f1_balb.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	45931.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	6.0	4.0	9.0	4.0	5.5	7.0
Merged-chr10-75894973-2	chr10	75894473	75895473	+	952.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358984, intron 4 of 5)	intron (NM_001358984, intron 4 of 5)	1575.0	NM_001358985	70377.0	Mm.275878	NM_024440	ENSMUSG00000009092	Derl3	1810006I20Rik|1810063P04Rik|IZP6|derlin-3	Der1-like domain family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156177361-2	chr2	156176862	156177862	+	952.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001291114, exon 3 of 17)	exon (NM_001291114, exon 3 of 17)	2218.0	NM_001291115	170791.0	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding	16.5	21.5	11.0	11.5	19.5	8.0
Merged-chr2-122156192-5	chr2	122155829	122156829	+	952.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026251, intron 2 of 17)	intron (NM_026251, intron 2 of 17)	-4371.0	NM_080510	70928.0	Mm.379188	NM_080510	ENSMUSG00000033368	Trim69	4921519C19Rik|Rnf36|Trif|Trimless	tripartite motif-containing 69	protein-coding	31.5	55.0	26.5	5.5	55.0	33.5
Merged-chr10-26827669-4	chr10	26827164	26828164	+	951.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	55152.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122557187-4	chr6	122556700	122557700	+	951.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009645, intron 1 of 4)	intron (NM_009645, intron 1 of 4)	3391.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	9.0	15.5	1.5	7.0	0.0	4.0
Merged-chr5-41707170-4	chr5	41706667	41707667	+	951.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132325, intron 1 of 5)	intron (NR_132325, intron 1 of 5)	524.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	19.0	32.0	24.0	22.0	27.5	24.5
Merged-chr5-72723596-4	chr5	72723084	72724084	+	951.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289494, intron 5 of 13)	intron (NM_001289494, intron 5 of 13)	13018.0	NM_013698	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70392715-3	chr9	70392200	70393200	+	951.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 26 of 27)	intron (NM_181072, intron 26 of 27)	13053.0	NR_049200	100885839.0		NR_049200	ENSMUSG00000093763	Mir5626	Gm25590|mir-5626|mmu-mir-5626	microRNA 5626	ncRNA	0.0	0.0	0.0	4.0	0.0	9.0
Merged-chr18-67491025-4	chr18	67490546	67491546	+	951.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_176832, exon 14 of 14)	3' UTR (NM_176832, exon 14 of 14)	26197.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	1.0	1.5	2.5	3.5	9.0	5.0
Merged-chr11-97985488-4	chr11	97984974	97985974	+	951.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163608, intron 1 of 13)	intron (NM_001163608, intron 1 of 13)	972.0	NM_028199	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-135184003-4	chr6	135183499	135184499	+	951.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	-4481.0	NR_040296	100502888.0	Mm.437844	NR_040296	ENSMUSG00000108239	Gm19434	-	predicted gene, 19434	ncRNA	45.5	83.0	41.5	17.5	8.0	8.5
Merged-chr18-80555948-4	chr18	80555439	80556439	+	951.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11393.0	NR_028424	100039348.0	Mm.254722	NR_028424		Gm2176	A430076E10Rik	glucosamine-6-phosphate deaminase 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103246523-4	chr11	103246016	103247016	+	951.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	20885.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139387457-2	chr5	139386957	139387957	+	951.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	-2447.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55205255-4	chr13	55204755	55205755	+	951.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-4527.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-115311455-4	chr10	115310939	115311939	+	951.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024454, intron 1 of 6)	intron (NM_024454, intron 1 of 6)	4152.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-92253987-3	chr2	92253469	92254469	+	951.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109690, intron 3 of 15)	intron (NM_001109690, intron 3 of 15)	32407.0	NM_001109690	192285.0	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1	PHD finger protein 21A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97238683-4	chr3	97238175	97239175	+	951.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-11311.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0.0	0.0	0.0	0.5	0.0	0.5
Merged-chr11-28188346-4	chr11	28187838	28188838	+	951.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	395986.0	NM_001166661	216613.0	Mm.93759	NM_181577	ENSMUSG00000032878	Ccdc85a	-	coiled-coil domain containing 85A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-47081445-4	chr7	47080927	47081927	+	951.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163565, intron 11 of 13)	intron (NM_001163565, intron 11 of 13)	1797.0	NR_106023	102465639.0		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95618566-4	chr13	95618074	95619074	+	951.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010169)	promoter-TSS (NM_010169)	-108.0	NM_010169	14062.0	Mm.24816	NM_010169	ENSMUSG00000048376	F2r	AI482343|Cf2r|Par1|ThrR	coagulation factor II (thrombin) receptor	protein-coding	0.0	1.0	0.5	0.0	0.0	0.0
Merged-chr1-151703053-4	chr1	151702545	151703545	+	951.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 9 of 13)	intron (NM_022018, intron 9 of 13)	51682.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-151563725-3	chr2	151563215	151564215	+	951.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8908.0	NM_145535	228765.0	Mm.32068	NM_145535	ENSMUSG00000027456	Sdcbp2	-	syndecan binding protein (syntenin) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50158684-2	chr17	50158184	50159184	+	951.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	31813.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21024718-3	chr5	21024217	21025217	+	951.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356591, intron 1 of 16)	intron (NM_001356591, intron 1 of 16)	10530.0	NM_001356592	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87466219-4	chr11	87465721	87466721	+	951.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	ORR1B1|LTR|ERVL-MaLR	38630.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4940354-4	chr7	4939864	4940864	+	951.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173008, intron 12 of 13)	intron (NM_173008, intron 12 of 13)	14520.0	NM_173008	269855.0	Mm.44190	NM_173008	ENSMUSG00000035279	Ssc5d	A430110N23Rik|S5D-SRCRB	scavenger receptor cysteine rich family, 5 domains	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116556111-6	chr4	116555627	116556627	+	951.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177670)	promoter-TSS (NM_177670)	-184.0	NM_177670	230657.0	Mm.291484	NM_177670	ENSMUSG00000055900	Tmem69	A630048M13Rik	transmembrane protein 69	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65766086-4	chr17	65765588	65766588	+	951.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	MTD|LTR|ERVL-MaLR	6664.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	5.5	44.5	15.5	4.5	33.0	12.5
Merged-chr2-91081098-7	chr2	91080589	91081589	+	951.8095089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10774.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	38.0	54.5	65.0	35.0	47.5	73.5
Merged-chr16-78200280-4	chr16	78199781	78200781	+	951.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55173.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26437510-5	chr17	26436970	26437970	+	951.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081656, intron 2 of 4)	intron (NM_001081656, intron 2 of 4)	22505.0	NM_001081656	240055.0	Mm.133211	NM_001081656	ENSMUSG00000034413	Neurl1b	C230078M08Rik|EG240055	neuralized E3 ubiquitin protein ligase 1B	protein-coding	219.5	432.5	355.0	34.0	125.0	66.5
Merged-chr10-69260180-4	chr10	69259668	69260668	+	951.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252637, intron 4 of 10)	intron (NM_001252637, intron 4 of 10)	46974.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101349628-4	chr4	101349156	101350156	+	951.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040708, intron 1 of 1)	intron (NR_040708, intron 1 of 1)	-2629.0	NR_029537	387143.0		NR_029537	ENSMUSG00000065451	Mir101a	Mirn101|Mirn101a|miR-101|mir-101a	microRNA 101a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-78312917-4	chr3	78312417	78313417	+	951.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	831970.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.0	0.0	1.5	1.0	1.0	2.0
Merged-chr17-29492466-3	chr17	29491915	29492915	+	951.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008842, intron 4 of 5)	intron (NM_008842, intron 4 of 5)	1370.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	91.0	206.5	160.5	63.0	217.5	165.5
Merged-chr11-54963038-3	chr11	54962576	54963576	+	951.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199276)	promoter-TSS (NM_001199276)	-136.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82526306-4	chr11	82525807	82526807	+	951.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107046.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171377312-4	chr1	171376836	171377836	+	951.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122680, intron 1 of 7)	intron (NM_001122680, intron 1 of 7)	7163.0	NM_001122680	71740.0	Mm.263414	NM_027893	ENSMUSG00000006411	Nectin4	1200017F15Rik|Prr4|Pvrl4	nectin cell adhesion molecule 4	protein-coding	2.5	1.5	6.0	0.0	0.0	0.0
Merged-chr13-45977100-4	chr13	45976620	45977620	+	951.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12129.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-71896094-4	chr9	71895612	71896612	+	951.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253864)	promoter-TSS (NM_001253864)	-16.0	NM_001253863	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-38010264-4	chr13	38009775	38010775	+	951.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027724, intron 11 of 12)	intron (NM_027724, intron 11 of 12)	-16067.0	NM_001360842	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	0.0	3.5	5.5	0.0	0.0	0.0
Merged-chr4-40267876-4	chr4	40267371	40268371	+	951.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134097, intron 2 of 2)	intron (NM_134097, intron 2 of 2)	-1708.0	NM_001349093	100504309.0	Mm.392019	NM_001349093		Smim27	2010003O02Rik|Toporsos	small integral membrane protein 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-108636394-4	chr5	108635883	108636883	+	951.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359426, intron 1 of 9)	intron (NM_001359426, intron 1 of 9)	6573.0	NM_001359426	72392.0	Mm.258324	NM_028223	ENSMUSG00000013495	Tmem175	3010001K23Rik|AI504381|mTMEM175	transmembrane protein 175	protein-coding	0.0	1.5	0.5	0.0	1.5	0.5
Merged-chr9-25522000-4	chr9	25521423	25522423	+	951.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	40326.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136583857-4	chr5	136583351	136584351	+	951.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16361.0	NM_001291238	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114479983-4	chr7	114479487	114480487	+	951.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011055, intron 1 of 15)	intron (NM_011055, intron 1 of 15)	64733.0	NM_011055	18576.0	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	2.0	7.5	4.0	14.0	7.0	13.0
Merged-chr7-4203996-4	chr7	4203518	4204518	+	951.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33736.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75530550-4	chr11	75530057	75531057	+	951.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1137.0	NM_001199284	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93072619-4	chr1	93072130	93073130	+	951.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294150, intron 8 of 46)	intron (NM_001294150, intron 8 of 46)	9850.0	NM_001294150	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12132900-4	chr18	12132361	12133361	+	951.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024182, intron 1 of 12)	intron (NM_024182, intron 1 of 12)	4011.0	NM_024182	66878.0	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	4.5	14.5	10.0	4.5	14.5	10.0
Merged-chr11-52097202-4	chr11	52096701	52097701	+	951.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1623.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52767495-4	chr3	52766979	52767979	+	951.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038079, intron 1 of 3)	intron (NR_038079, intron 1 of 3)	27755.0	NR_038079	329639.0	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91021264-4	chr16	91020774	91021774	+	951.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152264, intron 15 of 17)	intron (NR_152264, intron 15 of 17)	-9966.0	NM_001164483	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50632821-4	chr16	50632303	50633303	+	951.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040566, intron 3 of 4)	intron (NR_040566, intron 3 of 4)	-41649.0	NM_027046	69339.0	Mm.422869	NM_027046	ENSMUSG00000050685	Ccdc54	1700007N18Rik|AI644412|BB013989|NYD-SP17	coiled-coil domain containing 54	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-28844176-4	chr13	28843682	28844682	+	951.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045054, intron 2 of 7)	intron (NR_045054, intron 2 of 7)	41240.0	NR_045054	72518.0	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120742561-4	chr2	120742060	120743060	+	951.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024856, intron 15 of 15)	intron (NM_001024856, intron 15 of 15)	-11043.0	NM_026891	68968.0	Mm.2289	NM_026891	ENSMUSG00000027284	Cdan1	1500015A01Rik|AI448026|AW492297|CDA-I|CDA1|CDAI	congenital dyserythropoietic anemia, type I (human)	protein-coding	16.5	14.5	10.5	38.5	60.0	32.5
Merged-chr12-31954425-4	chr12	31953933	31954933	+	951.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4188.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	2.5	23.5	33.5	8.0	5.5	7.0
Merged-chr8-106972923-5	chr8	106972420	106973420	+	951.675537	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009229, intron 1 of 6)	intron (NM_009229, intron 1 of 6)	37170.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	31.0	36.5	30.5	29.0	55.0	47.5
Merged-chr13-81402581-3	chr13	81402097	81403097	+	951.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 77 of 89)	L1MDa|LINE|L1	230547.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-86884747-3	chr8	86884244	86885244	+	951.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	CpG	514.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	31.0	92.5	63.0	23.5	96.0	80.0
Merged-chr13-37965527-5	chr13	37964945	37965945	+	951.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28763.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	3.0	15.5	9.5	5.0	62.0	36.5
Merged-chr2-129197848-3	chr2	129197385	129198385	+	951.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159593)	promoter-TSS (NM_001159593)	-888.0	NM_015747	20515.0	Mm.272675	NM_015747	ENSMUSG00000027397	Slc20a1	AI607883|Glvr-1|Glvr1	solute carrier family 20, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106193090-3	chr11	106192598	106193598	+	951.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252449, intron 1 of 10)	intron (NM_001252449, intron 1 of 10)	505.0	NM_001252448	72149.0	Mm.403722	NM_028126	ENSMUSG00000069631	Strada	2610019A05Rik|6030402H20Rik|AI480680|E130112C09Rik	STE20-related kinase adaptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105515508-4	chr5	105514984	105515984	+	951.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3987.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	15.0	22.5	7.5	16.5	31.5	24.0
Merged-chr16-95800797-3	chr16	95800294	95801294	+	951.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97919.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116085641-3	chr3	116085136	116086136	+	951.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44052.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114527978-3	chr7	114527477	114528477	+	951.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011055, intron 12 of 15)	intron (NM_011055, intron 12 of 15)	34995.0	NR_110407	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39559615-3	chr18	39559094	39560094	+	951.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72349.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100504779-2	chr7	100504254	100505254	+	951.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_153527, intron 5 of 7)	intron (NM_153527, intron 5 of 7)	10061.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	54.0	129.5	87.0	19.5	13.5	22.5
Merged-chr3-88477936-4	chr3	88477438	88478438	+	951.662476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15374.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5941538-4	chr17	5940997	5941997	+	951.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001113353, exon 1 of 27)	exon (NM_001113353, exon 1 of 27)	217.0	NM_001113352	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65480596-4	chr5	65480095	65481095	+	951.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133697, intron 1 of 4)	ID_B1|SINE|B4	12240.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10689712-2	chr19	10689212	10690212	+	951.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	intron (NM_001361958, intron 1 of 4)	977.0	NM_001361959	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116130382-4	chr3	116129878	116130878	+	951.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011693)	promoter-TSS (NM_011693)	-690.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	31.0	107.0	76.0	54.5	65.0	76.5
Merged-chr2-61512253-4	chr2	61511760	61512760	+	951.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-66326.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144337435-4	chr2	144336934	144337934	+	951.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-5354.0	NM_026924	107586.0	Mm.252750	NM_026924	ENSMUSG00000037279	Ovol2	1700108N11Rik|1810007D21Rik|M-OVO|M-OVO-A|M-OVO-B|MOVO|Ovo2|Zfp339|movo2	ovo like zinc finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-17428022-4	chr14	17427501	17428501	+	951.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-232959.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55505160-4	chr1	55504657	55505657	+	951.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	Lx8|LINE|L1	99211.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	7.0	21.5	18.0	13.0	15.5	18.5
Merged-chr18-21300326-4	chr18	21299800	21300800	+	951.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033445)	promoter-TSS (NM_001033445)	-161.0	NM_001033445	381126.0	Mm.312276	NM_001033445	ENSMUSG00000042680	Garem1	C86169|Fam59a|Garem|Gm944|mKIAA4238	GRB2 associated regulator of MAPK1 subtype 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-110753960-3	chr13	110753477	110754477	+	951.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-149522.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	0.0	2.0	0.5	0.0	1.5	0.0
Merged-chr6-125163869-5	chr6	125163275	125164275	+	951.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289726, intron 2 of 6)	intron (NM_001289726, intron 2 of 6)	1998.0	NM_008084	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	3.0	4.0	8.0	2.5	7.5	3.0
Merged-chr2-167334581-2	chr2	167334081	167335081	+	951.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	14597.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121808428-4	chr11	121807928	121808928	+	951.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21790.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37048094-4	chr19	37047646	37048646	+	951.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198300, intron 9 of 10)	B3A|SINE|B2	122067.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	25.0	24.5	28.5	1.0	0.5	3.0
Merged-chr1-80676439-4	chr1	80675949	80676949	+	951.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	-11097.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80150193-4	chr18	80149677	80150677	+	951.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175028, intron 1 of 3)	intron (NM_175028, intron 1 of 3)	1305.0	NM_175028	240442.0	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27388566-4	chr14	27388062	27389062	+	951.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 7 of 10)	intron (NM_027871, intron 7 of 10)	27173.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	2.0	21.5	21.5	0.0	9.5	11.5
Merged-chr19-34682744-3	chr19	34682272	34683272	+	951.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172838, intron 2 of 6)	Lx7|LINE|L1	41883.0	NM_008331	15957.0	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	0.5	5.5	9.5	4.5	2.5	7.5
Merged-chr3-98051919-3	chr3	98051395	98052395	+	951.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 2 of 33)	intron (NM_010928, intron 2 of 33)	38357.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28601928-3	chr7	28601428	28602428	+	951.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3744.0	NM_027470	70584.0	Mm.21876	NM_027470	ENSMUSG00000030602	Pak4	5730488L07Rik|AW555722|mKIAA1142	p21 (RAC1) activated kinase 4	protein-coding	6.0	2.0	4.5	2.0	8.5	1.0
Merged-chr17-29494739-7	chr17	29494312	29495312	+	951.5476070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008842, exon 6 of 6)	3' UTR (NM_008842, exon 6 of 6)	3767.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	1.0	28.0	5.5	0.0	8.5	7.0
Merged-chr18-65692344-4	chr18	65691845	65692845	+	951.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5923.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	28.0	106.0	76.5	24.5	73.5	79.0
Merged-chr5-105560008-5	chr5	105559580	105560580	+	951.5200199999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	40609.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145201761-4	chr4	145201367	145202367	+	951.5089109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-6862.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43786232-2	chr5	43785732	43786732	+	951.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-4083.0	NM_178729	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	2.5	0.0	4.0	0.0	4.5	4.5
Merged-chr4-141500770-4	chr4	141500265	141501265	+	951.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347235, intron 3 of 14)	intron (NM_001347235, intron 3 of 14)	37832.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	7.0	40.0	9.0	0.0	1.5	8.5
Merged-chr16-78239914-2	chr16	78239414	78240414	+	951.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15540.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24750459-2	chr5	24749959	24750959	+	951.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153076)	TTS (NM_153076)	7384.0	NM_153076	214301.0	Mm.63484	NM_153076	ENSMUSG00000038135	Crygn	-	crystallin, gamma N	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-32784401-7	chr14	32783929	32784929	+	951.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1534.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-16182070-2	chr3	16181570	16182570	+	951.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1095.0	NM_001358043	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128318949-2	chr10	128318449	128319449	+	951.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001252327, exon 24 of 26)	exon (NM_001252327, exon 24 of 26)	-3510.0	NM_019953	56530.0	Mm.44220	NM_019953	ENSMUSG00000025381	Cnpy2	5330432A10Rik|AW229003|D10Bwg1546e|Tmem4|Zsig9	canopy FGF signaling regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-133444934-4	chr2	133444430	133445430	+	951.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107229.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70958460-3	chr17	70957970	70958970	+	951.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	32046.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100175176-4	chr15	100174692	100175692	+	951.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172819, intron 13 of 32)	intron (NM_172819, intron 13 of 32)	12844.0	NR_037311	100499528.0		NR_037311	ENSMUSG00000092752	Mir3473a	Mir3473|mir-3473a|mmu-mir-3473|mmu-mir-3473a	microRNA 3473a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127471855-4	chr7	127471354	127472354	+	951.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145589, exon 1 of 11)	5' UTR (NM_145589, exon 1 of 11)	240.0	NM_145589	233895.0	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80341081-4	chr7	80340611	80341611	+	951.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133952)	promoter-TSS (NM_133952)	-892.0	NM_133952	101869.0	Mm.243024	NM_133952	ENSMUSG00000030533	Unc45a	AW538196	unc-45 myosin chaperone A	protein-coding	13.5	14.0	19.5	26.0	13.0	30.5
Merged-chr17-84328659-3	chr17	84328161	84329161	+	951.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 28 of 37)	intron (NM_183021, intron 28 of 37)	137547.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87360586-4	chr3	87360074	87361074	+	951.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009690, intron 1 of 5)	intron (NM_009690, intron 1 of 5)	2693.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	92.0	224.0	159.5	81.0	259.5	136.0
Merged-chr3-55349535-2	chr3	55349035	55350035	+	951.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357475, intron 3 of 16)	intron (NM_001357475, intron 3 of 16)	107171.0	NM_001357466	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-68638462-2	chr3	68637962	68638962	+	951.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52182.0	NM_001159424	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94329437-3	chr16	94328933	94329933	+	951.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133229, intron 2 of 3)	intron (NM_133229, intron 2 of 3)	1011.0	NM_133229	170765.0	Mm.42604	NM_133229	ENSMUSG00000022941	Ripply3	Dscr6	ripply transcriptional repressor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101229282-2	chr15	101228782	101229782	+	951.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019518, intron 4 of 7)	intron (NM_019518, intron 4 of 7)	-4096.0	NR_045328	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50875877-4	chr14	50875364	50876364	+	951.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5310.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	15.0	23.5	20.0	8.5	8.0	13.5
Merged-chr15-79324292-2	chr15	79323759	79324759	+	951.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016915, intron 1 of 15)	intron (NM_016915, intron 1 of 15)	4112.0	NM_016915	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	41.5	75.5	28.0	13.0	40.5	39.0
Merged-chr7-38108471-2	chr7	38107955	38108955	+	951.5	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007633)	promoter-TSS (NM_007633)	-965.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	31.5	58.0	74.0	22.0	47.5	62.5
Merged-chr4-135967644-2	chr4	135967144	135968144	+	951.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011942)	TTS (NM_011942)	3919.0	NM_001356493	74246.0	Mm.247946	NM_178389	ENSMUSG00000028671	Gale	2310002A12Rik|AI323962	galactose-4-epimerase, UDP	protein-coding	0.0	0.0	5.0	0.0	0.0	2.0
Merged-chr4-32658134-2	chr4	32657634	32658634	+	951.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081392, intron 1 of 101)	URR1B|DNA|hAT-Charlie	1015.0	NM_001081392	100019.0	Mm.24627	NM_133874	ENSMUSG00000058006	Mdn1	4833432B22Rik|A130070M06|AA958993|D4Abb1e|Gm135	midasin AAA ATPase 1	protein-coding	1.5	6.5	1.5	0.0	4.0	0.0
Merged-chr12-65173834-2	chr12	65173335	65174335	+	951.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1255.0	NM_172578	217653.0	Mm.21144	NM_172578	ENSMUSG00000047534	Mis18bp1	6720403H11|C79407|Knl2|mKIAA1903	MIS18 binding protein 1	protein-coding	21.5	48.5	27.0	15.5	38.5	23.5
Merged-chr1-33964820-3	chr1	33964315	33965315	+	951.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276764, intron 2 of 102)	intron (NM_001276764, intron 2 of 102)	-47010.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-20702094-11	chr5	20701671	20702671	+	951.4772949999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001170745, exon 21 of 21)	3' UTR (NM_001170745, exon 21 of 21)	179953.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20743024-7	chr18	20742534	20743534	+	951.4761960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	3370.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102839288-3	chr2	102838787	102839787	+	951.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 6 of 13)	intron (NM_001039150, intron 6 of 13)	62378.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	18.0	14.0	9.0	16.0	19.0	10.5
Merged-chr5-148595534-4	chr5	148595051	148596051	+	951.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42763.0	NM_001359199	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	12.0	20.0	10.5	10.5	21.0	8.5
Merged-chr7-113180446-4	chr7	113179968	113180968	+	951.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-26997.0	NM_001243048	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	0.0	6.0	8.0	6.5	6.0	9.5
Merged-chr4-128971263-4	chr4	128970762	128971762	+	951.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8807.0	NM_001301841	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-113441921-7	chr2	113441445	113442445	+	951.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001285459, exon 1 of 17)	exon (NM_001285459, exon 1 of 17)	881.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-57622017-4	chr19	57621523	57622523	+	951.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181415, intron 1 of 28)	L1ME1|LINE|L1	10989.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	0.0	11.0	7.0	14.0	29.0	24.5
Merged-chr19-5622107-4	chr19	5621620	5622620	+	951.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-12026.0	NM_178637	81601.0	Mm.228930	NM_178637	ENSMUSG00000024926	Kat5	AI839539|CPLA2|Htatip|Htatip1|PLIP|Tip55|Tip60	K(lysine) acetyltransferase 5	protein-coding	39.5	107.0	66.5	36.5	50.5	53.0
Merged-chr10-95532417-4	chr10	95531892	95532892	+	951.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080560, intron 1 of 3)	intron (NM_080560, intron 1 of 3)	17230.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108333645-3	chr12	108333139	108334139	+	951.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010010)	promoter-TSS (NM_010010)	-677.0	NM_010010	13116.0	Mm.41911	NM_010010	ENSMUSG00000021259	Cyp46a1	CH24H|Cyp46	cytochrome P450, family 46, subfamily a, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117320143-4	chr11	117319650	117320650	+	951.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-11565.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-18619276-4	chr8	18618722	18619722	+	951.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173189, intron 3 of 13)	B3|SINE|B2	24091.0	NM_173189	244329.0	Mm.235296	NM_173189	ENSMUSG00000039842	Mcph1	5430437K10Rik|BRIT1|D030046N04Rik|MCT|Tg(HLA-A2.1)1Enge	microcephaly, primary autosomal recessive 1	protein-coding	0.5	0.0	0.0	0.0	0.0	1.0
Merged-chr14-54433869-6	chr14	54433525	54434525	+	951.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008608, intron 1 of 9)	intron (NM_008608, intron 1 of 9)	2427.0	NM_008608	17387.0	Mm.280175	NM_008608	ENSMUSG00000000957	Mmp14	AI325305|MMP-X1|MT-MMP-1|MT1-MMP|sabe	matrix metallopeptidase 14 (membrane-inserted)	protein-coding	5.5	7.0	12.0	5.5	9.5	15.0
Merged-chr15-8710569-6	chr15	8710129	8711129	+	951.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_148938, exon 1 of 10)	5' UTR (NM_148938, exon 1 of 10)	178.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-115694314-4	chr3	115693826	115694826	+	951.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20729.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.0	0.0	3.5	5.0	1.0	11.5
Merged-chr6-129103337-4	chr6	129102850	129103850	+	951.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2447.0	NM_153506	232409.0	Mm.30870	NM_153506	ENSMUSG00000030155	Clec2e	Clra|clr-a	C-type lectin domain family 2, member e	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11990094-4	chr4	11989602	11990602	+	951.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040577, intron 4 of 4)	intron (NR_040577, intron 4 of 4)	23528.0	NR_040577	100503636.0	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65533573-4	chr9	65533070	65534070	+	951.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	46517.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	10.0	25.5	28.5	12.0	40.0	25.0
Merged-chr9-45245610-4	chr9	45245052	45246052	+	951.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 4 of 4)	intron (NM_001198971, intron 4 of 4)	21155.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53466742-4	chr11	53466196	53467196	+	951.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027917, intron 7 of 7)	CpG	9491.0	NM_027917	71774.0	Mm.274370	NM_027917	ENSMUSG00000018387	Shroom1	Apx|Shrm1	shroom family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34411278-2	chr17	34410767	34411767	+	951.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163855, intron 1 of 23)	intron (NM_001163855, intron 1 of 23)	12447.0	NM_001163855	407788.0	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	1.0	4.5	0.0	1.0	0.0	0.0
Merged-chr8-94199303-2	chr8	94198803	94199803	+	951.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-15261.0	NM_001357266	71805.0	Mm.458170	NM_172410	ENSMUSG00000032939	Nup93	2410008G02Rik	nucleoporin 93	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25686307-2	chr7	25685807	25686807	+	951.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011577)	promoter-TSS (NM_011577)	-695.0	NM_011577	21803.0	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119996096-4	chr2	119995584	119996584	+	951.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355293, intron 1 of 30)	intron (NM_001355293, intron 1 of 30)	-21433.0	NR_106125	102466842.0		NR_106125	ENSMUSG00000098632	Mir7665	Gm27478|mmu-mir-7665	microRNA 7665	ncRNA	9.0	13.5	21.5	8.0	29.0	15.5
Merged-chr7-66106824-2	chr7	66106324	66107324	+	951.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2691.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85600505-3	chr12	85600031	85601031	+	951.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 1 of 3)	intron (NM_001205053, intron 1 of 3)	513.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32519290-2	chr9	32518790	32519790	+	951.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	22162.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-17539517-3	chr14	17539014	17540014	+	951.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121446.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-48001957-3	chr2	48001463	48002463	+	951.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-812146.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57162639-2	chr9	57162139	57163139	+	951.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4340.0	NM_025417	66199.0	Mm.41687	NM_025417	ENSMUSG00000032299	Commd4	1110039H05Rik	COMM domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116183567-1	chr9	116183067	116184067	+	951.3333130000001	f0_balb.idr	Intergenic	Intergenic	-5613.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	60.5	155.5	132.0	118.0	276.5	191.5
Merged-chr3-83798015-4	chr3	83797516	83798516	+	951.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31695.0	NM_009144	20319.0	Mm.19155	NM_009144	ENSMUSG00000027996	Sfrp2	AI851596|Sdf5	secreted frizzled-related protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-82811752-4	chr7	82811260	82812260	+	951.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-55573.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	67.0	105.5	63.5	15.0	41.0	22.0
Merged-chr9-96438047-6	chr9	96437528	96438528	+	951.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40647.0	NM_011279	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-40694951-4	chr11	40694398	40695398	+	951.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001199274, exon 1 of 7)	5' UTR (NM_001199274, exon 1 of 7)	305.0	NM_001199274	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62866859-4	chr11	62866372	62867372	+	951.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033669, intron 8 of 12)	MIR|SINE|MIR	-12583.0	NM_001356520	67510.0	Mm.9806	NM_026210	ENSMUSG00000014177	Tvp23b	1810036I24Rik|Fam18b|Fam18b1	trans-golgi network vesicle protein 23B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-130065694-3	chr3	130065201	130066201	+	951.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-4794.0	NM_207209	99683.0	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89045821-3	chr6	89045294	89046294	+	951.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50316.0	NR_134978	232217.0	Mm.281744	NM_175017	ENSMUSG00000055403	4933427D06Rik	-	RIKEN cDNA 4933427D06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-177260565-4	chr1	177260057	177261057	+	951.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11790.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	5.5	17.0	11.5	11.5	21.0	13.5
Merged-chr7-138845746-4	chr7	138845211	138846211	+	951.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026391)	promoter-TSS (NM_026391)	556.0	NM_001045483	69546.0	Mm.31598	NM_027115	ENSMUSG00000041775	Mapk1ip1	2310009E07Rik|AU043776|MISS	mitogen-activated protein kinase 1 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99375841-2	chr7	99375340	99376340	+	951.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5678.0	NM_001362168	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	8.0	12.0	9.5	8.0	6.5	11.5
Merged-chr5-139363930-2	chr5	139363430	139364430	+	951.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 3 of 4)	intron (NM_028469, intron 3 of 4)	5815.0	NR_029768	723898.0		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64172907-4	chr9	64172374	64173374	+	951.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026507)	promoter-TSS (NM_026507)	57.0	NM_026507	68014.0	Mm.335237	NM_026507	ENSMUSG00000032400	Zwilch	2310031L18Rik	zwilch kinetochore protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-56737264-4	chr10	56736759	56737759	+	951.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	305278.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29491904-4	chr17	29491385	29492385	+	951.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008842, exon 4 of 6)	exon (NM_008842, exon 4 of 6)	840.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	27.5	82.5	61.0	23.5	85.5	59.0
Merged-chr3-95667453-4	chr3	95666983	95667983	+	951.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	8762.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	42.5	88.0	55.5	23.0	60.0	46.0
Merged-chr1-184808366-3	chr1	184807873	184808873	+	951.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290273, intron 1 of 6)	intron (NM_001290273, intron 1 of 6)	2927.0	NM_001290273	66112.0	Mm.272457	NM_001081361	ENSMUSG00000026621	Marc1	1300013F15Rik|Mosc1	mitochondrial amidoxime reducing component 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118102174-4	chr10	118101732	118102732	+	951.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39555.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	3.5	23.0	29.0	22.5	18.5	11.0
Merged-chr9-32211584-4	chr9	32211067	32212067	+	951.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195632, intron 10 of 21)	MTC|LTR|ERVL-MaLR	-12682.0	NM_177379	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80727632-4	chr17	80727166	80728166	+	951.229126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360278, intron 1 of 33)	CpG	359.0	NM_001360278	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54474803-3	chr14	54474287	54475287	+	951.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1313.0	NM_080726	140743.0	Mm.274727	NM_080726	ENSMUSG00000022176	Rem2	AW411893	rad and gem related GTP binding protein 2	protein-coding	9.0	18.0	5.0	6.0	21.0	13.5
Merged-chr16-85114881-3	chr16	85114380	85115380	+	951.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 2 of 15)	intron (NM_001198825, intron 2 of 15)	58827.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	15.5	18.0	21.5	15.0	18.0	21.5
Merged-chr2-84602431-3	chr2	84601941	84602941	+	951.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007615, exon 20 of 20)	3' UTR (NM_007615, exon 20 of 20)	47039.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	1.5	27.0	4.5	5.0	9.0	6.5
Merged-chr10-123360671-3	chr10	123360159	123361159	+	951.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252387, intron 1 of 4)	intron (NM_001252387, intron 1 of 4)	96583.0	NM_001252387	268354.0	Mm.51939	NM_182807	ENSMUSG00000044071	Fam19a2	6330575M02|FAM19A2 TAFA-2|Sam2|TAFA2|Tafa-2	family with sequence similarity 19, member A2	protein-coding	1.5	0.0	1.0	1.5	2.0	2.0
Merged-chr7-19178367-2	chr7	19177869	19178869	+	951.214294	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347582, intron 1 of 21)	intron (NM_001347582, intron 1 of 21)	1948.0	NM_001347582	72205.0	Mm.154121	NM_028153	ENSMUSG00000040811	Eml2	1600029N02Rik|EMAP-2	echinoderm microtubule associated protein like 2	protein-coding	0.0	0.0	2.0	0.0	0.0	1.0
Merged-chr15-9132762-4	chr15	9132244	9133244	+	951.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 2 of 9)	intron (NM_013787, intron 2 of 9)	7710.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180225867-4	chr2	180225380	180226380	+	951.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081171)	promoter-TSS (NM_001081171)	-21.0	NM_001081171	16776.0	Mm.4339	NM_001081171	ENSMUSG00000015647	Lama5	AA408760|AA408762|AI853660|[a]5|laminin-511|mKIAA0533	laminin, alpha 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-104053168-4	chr5	104052662	104053662	+	951.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028794, intron 2 of 7)	intron (NM_028794, intron 2 of 7)	5159.0	NR_049192	100885831.0		NR_049192	ENSMUSG00000093690	Mir5619	Gm23866|mir-5619|mmu-mir-5619	microRNA 5619	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94772118-4	chr8	94771627	94772627	+	951.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009142)	promoter-TSS (NM_009142)	-53.0	NM_009142	20312.0	Mm.103711	NM_009142	ENSMUSG00000031778	Cx3cl1	AB030188|ABCD-3|AI848747|CX3C|Cxc3|D8Bwg0439e|Scyd1	chemokine (C-X3-C motif) ligand 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136954531-4	chr5	136953968	136954968	+	951.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347504, intron 1 of 3)	intron (NM_001347504, intron 1 of 3)	1193.0	NM_001347504	66437.0	Mm.25849	NM_025562	ENSMUSG00000019054	Fis1	2010003O14Rik|Ttc11	fission, mitochondrial 1	protein-coding	4.5	7.0	15.5	5.5	31.0	18.5
Merged-chr4-140957982-4	chr4	140957483	140958483	+	951.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045911)	promoter-TSS (NR_045911)	-81.0	NR_045911	100126227.0	Mm.404073	NR_045911	ENSMUSG00000087698	Gm13031	-	predicted gene 13031	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101858597-4	chr7	101858089	101859089	+	951.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008034, exon 7 of 7)	exon (NM_008034, exon 7 of 7)	-1399.0	NM_001303239	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68465061-4	chr10	68464550	68465550	+	951.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028491, intron 5 of 7)	intron (NM_028491, intron 5 of 7)	76825.0	NM_028491	73287.0	Mm.141830	NM_028491	ENSMUSG00000019945	Cabcoco1	1700040L02Rik	ciliary associated calcium binding coiled-coil 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58618436-4	chr1	58617934	58618934	+	951.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32037.0	NM_025597	66495.0	Mm.2033	NM_025597	ENSMUSG00000026032	Ndufb3	2700033I16Rik|CI-B12	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3861890-4	chr12	3861387	3862387	+	951.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045884, exon 2 of 4)	non-coding (NR_045884, exon 2 of 4)	357.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-142467361-5	chr1	142466851	142467851	+	951.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-1173346.0	NM_020025	26878.0	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34519827-4	chr19	34519318	34520318	+	951.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	7656.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32138863-4	chr19	32138366	32139366	+	951.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 7 of 9)	intron (NM_144792, intron 7 of 9)	-35726.0	NM_018830	54447.0	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34792775-4	chr13	34792281	34793281	+	951.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53139.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12894881-2	chr13	12894381	12895381	+	951.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-94802.0	NM_011118	18812.0	Mm.457984	NM_011118	ENSMUSG00000056457	Prl2c3	Ghd1|MRP-2|MRP-3|Mrpplf3|PLF-2|PLF-3|Plf2|Prl2c4|mrp/plf3	prolactin family 2, subfamily c, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102283825-3	chr15	102283324	102284324	+	951.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4368.0	NM_134100	106073.0	Mm.287740	NM_134100	ENSMUSG00000045665	Mfsd5	AA409375|AW556797|D15Mgi27	major facilitator superfamily domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26885169-4	chr17	26884664	26885664	+	951.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31927.0	NM_053173	16580.0	Mm.491138	NM_016761	ENSMUSG00000024301	Kifc5b	Hset|KNSL2|Kifc5a	kinesin family member C5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74807509-3	chr17	74807034	74808034	+	951.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152817, intron 13 of 19)	intron (NM_152817, intron 13 of 19)	89784.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	2.5	12.0	2.0	4.0	12.0	2.0
Merged-chr11-53737760-4	chr11	53737279	53738279	+	951.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16985.0	NM_010558	16191.0	Mm.4461	NM_010558	ENSMUSG00000036117	Il5	Il-5	interleukin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-19873765-4	chr4	19873301	19874301	+	951.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48765.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-139919073-4	chr2	139918578	139919578	+	951.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110352, intron 9 of 12)	Lx8|LINE|L1	147727.0	NM_001159640	75812.0	Mm.293449	NM_175225	ENSMUSG00000039033	Tasp1	4930485D02Rik|AW986064	taspase, threonine aspartase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135085323-2	chr5	135084823	135085823	+	951.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4567.0	NM_001359237	58805.0	Mm.34213	NM_021455	ENSMUSG00000005373	Mlxipl	ChREBP|Mlx|WS-bHLH|Wbscr14|bHLHd14	MLX interacting protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80940671-7	chr10	80940136	80941136	+	951.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10545.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36090223-4	chr1	36089724	36090724	+	951.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	21824.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79726336-4	chr10	79725837	79726837	+	951.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008226, intron 3 of 7)	intron (NM_008226, intron 3 of 7)	9703.0	NM_008226	15166.0	Mm.12956	NM_008226	ENSMUSG00000020331	Hcn2	BCNG2|HAC1|trls	hyperpolarization-activated, cyclic nucleotide-gated K+ 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135399682-4	chr1	135399179	135400179	+	951.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357578, intron 15 of 24)	intron (NM_001357578, intron 15 of 24)	-24616.0	NM_175259	77552.0	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78745722-4	chr11	78745230	78746230	+	951.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5999.0	NM_197989	69109.0	Mm.341420	NM_197989	ENSMUSG00000049489	Fam58b	1810009O10Rik|Ccnq|Fam58a	family with sequence similarity 58, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37825974-4	chr13	37825469	37826469	+	951.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033615)	promoter-TSS (NR_033615)	-69.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-3976435-3	chr10	3975937	3976937	+	951.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 1 of 27)	ORR1E|LTR|ERVL-MaLR	3362.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135715787-3	chr5	135715283	135716283	+	951.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 1 of 15)	intron (NM_008898, intron 1 of 15)	20106.0	NR_106001	102466791.0		NR_106001	ENSMUSG00000099197	Mir7034	Gm27372|mmu-mir-7034	microRNA 7034	ncRNA	0.0	5.0	1.5	0.5	0.0	2.0
Merged-chr3-95459307-3	chr3	95458806	95459806	+	951.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037737, intron 3 of 21)	intron (NM_001037737, intron 3 of 21)	24916.0	NM_001037737	11863.0	Mm.250265	NM_009709	ENSMUSG00000015522	Arnt	D3Ertd557e|Drnt|ESTM42|Hif1b|W08714|bHLHe2|mKIAA4051	aryl hydrocarbon receptor nuclear translocator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31133855-4	chr3	31133357	31134357	+	951.1083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-16063.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-118477866-4	chr5	118477356	118478356	+	951.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82863.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-9798147-5	chr1	9797676	9798676	+	951.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177547)	promoter-TSS (NM_177547)	46.0	NM_177547	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	43.5	50.0	71.0	28.5	84.0	61.0
Merged-chr4-150568780-4	chr4	150568254	150569254	+	951.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	83420.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	1.0	9.0	3.0	9.5	4.0	8.5
Merged-chr10-118110222-4	chr10	118109737	118110737	+	951.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31550.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126254977-4	chr4	126254452	126255452	+	951.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145970, intron 1 of 16)	intron (NM_001145970, intron 1 of 16)	1367.0	NM_144941	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	24.5	39.5	22.0	14.0	28.5	19.5
Merged-chr18-5945180-4	chr18	5944665	5945665	+	951.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	190933.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	8.0	12.0	2.0	31.0	34.0	54.5
Merged-chr2-31259096-4	chr2	31258558	31259558	+	951.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019681, intron 1 of 7)	intron (NM_019681, intron 1 of 7)	13135.0	NM_019681	14299.0	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-79821672-4	chr7	79821178	79822178	+	951.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008486)	TTS (NM_008486)	10951.0	NM_008589	17293.0	Mm.31472	NM_008589	ENSMUSG00000030543	Mesp2	bHLHc6	mesoderm posterior 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116130952-5	chr3	116130491	116131491	+	951.080017	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1303.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	38.0	75.5	44.5	58.5	36.0	32.5
Merged-chr12-79613736-7	chr12	79613159	79614159	+	951.0714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	311074.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-117036503-4	chr13	117036007	117037007	+	951.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10991.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35078046-4	chr17	35077531	35078531	+	951.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027366, intron 2 of 2)	intron (NM_027366, intron 2 of 2)	1089.0	NM_027366	70274.0	Mm.250491	NM_027366	ENSMUSG00000013766	Ly6g6e	2310011I02Rik|G6e	lymphocyte antigen 6 complex, locus G6E	protein-coding	48.5	54.5	71.0	19.5	52.0	35.5
Merged-chr2-170311166-4	chr2	170310674	170311674	+	951.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45187.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41371492-4	chr19	41371000	41372000	+	951.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	L1MA9|LINE|L1	13570.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	9.5	52.0	19.5	9.5	23.5	21.0
Merged-chr9-50699255-2	chr9	50698755	50699755	+	951.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178118, intron 5 of 19)	CpG	28729.0	NM_178118	330938.0	Mm.82598	NM_178118	ENSMUSG00000032064	Dixdc1	4930563F16Rik|BC048182|Ccd1|Ccd1Aalpha1L|Ccd1Abeta1L|Ccd1BalphaL|Ccd1BbetaL|Ccd1CL|mKIAA1735	DIX domain containing 1	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr2-158161065-2	chr2	158160565	158161565	+	951.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14673.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47561745-2	chr6	47561245	47562245	+	951.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146689, intron 3 of 19)	intron (NM_001146689, intron 3 of 19)	33285.0	NM_001146689	14056.0	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-77268982-2	chr16	77268482	77269482	+	951.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60346.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54808361-4	chr11	54807846	54808846	+	951.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11573.0	NR_040284	432562.0	Mm.406948	NR_040284	ENSMUSG00000086789	Lyrm7os	Gm12228	LYR motif containing 7, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133844425-3	chr4	133843985	133844985	+	951.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	30246.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	1.0	4.5	5.5	11.5	5.0	14.5
Merged-chr4-147418413-2	chr4	147417913	147418913	+	951.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	-134864.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-36898626-1	chr6	36898126	36899126	+	951.0	f0_balb.idr	intron (NM_001347104, intron 27 of 32)	intron (NM_001347104, intron 27 of 32)	-88447.0	NM_008973	19242.0	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3412051-2	chr7	3411551	3412551	+	951.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133190, intron 2 of 3)	CpG	-3015.0	NR_128566	104795667.0		NR_128566	ENSMUSG00000094210	Gm23450	Mir935|mmu-mir-935	predicted gene, 23450	ncRNA	0.5	1.5	0.0	0.5	1.5	0.0
Merged-chr6-92940984-3	chr6	92940481	92941481	+	951.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	399.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	2.5	1.5	1.5	8.5	10.0	8.5
Merged-chr6-122560548-4	chr6	122560037	122561037	+	951.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009645, intron 2 of 4)	(CA)n|Simple_repeat|Simple_repeat	6728.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	7.0	1.0	14.0	3.0	19.5	14.5
Merged-chr8-22806637-4	chr8	22806139	22807139	+	951.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122820)	promoter-TSS (NM_001122820)	-985.0	NM_001122820	64933.0	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	21.5	100.0	36.5	16.0	37.5	28.0
Merged-chr17-50876615-4	chr17	50876117	50877117	+	951.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 13 of 21)	intron (NM_028162, intron 13 of 21)	177936.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21999751-4	chr14	21999212	22000212	+	951.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-10111.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70140364-1	chr8	70139864	70140864	+	951.0	f1_c57bl6.idr	promoter-TSS (NM_001309841)	promoter-TSS (NM_001309841)	87.0	NM_001309841	72368.0	Mm.644	NM_001145552	ENSMUSG00000002345	Borcs8	2310045N01Rik|Mef2bnb	BLOC-1 related complex subunit 8	protein-coding	8.0	37.5	29.5	18.5	22.0	20.0
Merged-chr15-83147930-2	chr15	83147430	83148430	+	951.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 1 of 7)	intron (NM_001347082, intron 1 of 7)	1448.0	NM_178627	73826.0	Mm.23758	NM_178627	ENSMUSG00000041815	Poldip3	1110008P04Rik|AA408269|AL022852|C77954|PDIP46|SKAR|mKIAA1649	polymerase (DNA-directed), delta interacting protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-43339846-1	chr9	43339346	43340346	+	951.0	f1_balb.idr	Intergenic	Intergenic	29083.0	NM_023655	72169.0	Mm.273277	NM_023655	ENSMUSG00000032013	Trim29	1110047J21Rik|2810431N19Rik|4732461M22Rik|AI119726	tripartite motif-containing 29	protein-coding	1.0	0.0	2.0	5.5	0.0	0.5
Merged-chr15-100766276-1	chr15	100765776	100766776	+	951.0	f1_balb.idr	intron (NM_021530, intron 1 of 24)	intron (NM_021530, intron 1 of 24)	4529.0	NM_021530	59033.0	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	0.0	0.0	1.0	1.5	0.0	0.0
Merged-chr5-64293865-2	chr5	64293365	64294365	+	951.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 11 of 18)	MT2B2|LTR|ERVL	63508.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	3.0	7.5	7.5	0.0	6.5	6.0
Merged-chr11-21369715-3	chr11	21369209	21370209	+	951.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290634, intron 1 of 9)	intron (NM_001290634, intron 1 of 9)	920.0	NM_139297	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	2.5	26.0	6.0	2.0	22.5	24.5
Merged-chr17-86162762-2	chr17	86162261	86163261	+	951.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5024.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	0.0	2.0	2.5	0.0	4.5	2.0
Merged-chr7-123396988-2	chr7	123396488	123397488	+	951.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025304, intron 1 of 10)	intron (NM_025304, intron 1 of 10)	-10829.0	NM_001355050	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-67573093-2	chr3	67572593	67573593	+	951.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9675.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	0.0	0.5	3.5	0.0	3.0	0.0
Merged-chr5-123453869-2	chr5	123453369	123454369	+	951.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133917, exon 17 of 17)	3' UTR (NM_133917, exon 17 of 17)	28232.0	NM_029594	76399.0	Mm.75049	NM_029594	ENSMUSG00000029437	Il31	1700013B14Rik	interleukin 31	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr18-57352531-4	chr18	57352056	57353056	+	951.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-2177.0	NM_028447	73137.0	Mm.29889	NM_028447	ENSMUSG00000024594	Prrc1	1190002C06Rik|2310058D16Rik|3110038B19Rik|9430085A19Rik	proline-rich coiled-coil 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43751862-2	chr19	43751362	43752362	+	951.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144874, intron 1 of 8)	intron (NM_144874, intron 1 of 8)	1138.0	NM_144874	226139.0	Mm.248237	NM_144874	ENSMUSG00000040018	Cox15	2900026G05Rik	cytochrome c oxidase assembly protein 15	protein-coding	10.5	11.0	8.0	7.0	14.0	16.5
Merged-chr11-101640248-2	chr11	101639748	101640748	+	951.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	12299.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-166002326-1	chr1	166001826	166002826	+	951.0	f0_balb.idr	intron (NM_198932, intron 1 of 15)	CpG	308.0	NM_011137	18986.0	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18923289-1	chr2	18922789	18923789	+	951.0	f0_balb.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	74832.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94473892-2	chr11	94473392	94474392	+	951.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001112813, exon 1 of 35)	5' UTR (NM_001112813, exon 1 of 35)	306.0	NM_001177888	12291.0	Mm.29585	NM_009783	ENSMUSG00000020866	Cacna1g	Cav3.1d|[a]1G|a1G|alpha-1G|mKIAA1123	calcium channel, voltage-dependent, T type, alpha 1G subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-183436626-1	chr1	183436126	183437126	+	951.0	f1_balb.idr	3' UTR (NM_030175, exon 9 of 9)	3' UTR (NM_030175, exon 9 of 9)	17378.0	NM_001308052	78772.0	Mm.29003	NM_030175	ENSMUSG00000053461	Hhipl2	4930507C10Rik|AW208802|Hhip3	hedgehog interacting protein-like 2	protein-coding	0.0	1.0	0.0	3.0	2.5	0.0
Merged-chr7-16075007-2	chr7	16074507	16075507	+	951.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001099277, intron 1 of 15)	B3A|SINE|B2	3162.0	NM_001099277	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	2.0	0.0	0.0	2.0	0.0	0.0
Merged-chr5-3362188-4	chr5	3361674	3362674	+	950.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	18281.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3424337-4	chr12	3423846	3424846	+	950.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030694, intron 1 of 2)	intron (NR_030694, intron 1 of 2)	2401.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63494942-4	chr4	63494428	63495428	+	950.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028640, exon 1 of 12)	exon (NM_028640, exon 1 of 12)	1063.0	NM_001008793	73750.0	Mm.300397	NM_028640	ENSMUSG00000039137	Whrn	1110035G07Rik|AW122018|AW742671|C430046P22Rik|Dfnb31|Ush2d|wi	whirlin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11668497-4	chr11	11667997	11668997	+	950.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17428.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167715233-4	chr2	167714720	167715720	+	950.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24043.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164792541-4	chr2	164792060	164793060	+	950.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133240)	TTS (NM_133240)	6539.0	NM_133924	101113.0	Mm.295647	NM_133924	ENSMUSG00000050373	Snx21	5730407K14Rik|AI481716	sorting nexin family member 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-100458463-4	chr9	100457971	100458971	+	950.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033543, exon 7 of 7)	3' UTR (NM_001033543, exon 7 of 7)	28002.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	18.0	68.0	47.0	43.0	69.5	71.5
Merged-chr11-117827539-2	chr11	117827039	117828039	+	950.944458	f1_balb.idr|f1_c57bl6.idr	intron (NM_027827, intron 1 of 10)	B1_Mur2|SINE|Alu	-1525.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-28621906-4	chr2	28621419	28622419	+	950.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008114)	promoter-TSS (NM_008114)	63.0	NM_008114	14582.0	Mm.373385	NM_008114	ENSMUSG00000026815	Gfi1b	Gfi-1B	growth factor independent 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-36360262-4	chr12	36359761	36360761	+	950.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-21189.0	NM_001289504	75847.0	Mm.261764	NM_178629	ENSMUSG00000043153	Ispd	4930579E17Rik|AV040780	isoprenoid synthase domain containing	protein-coding	0.0	0.5	7.0	0.0	1.5	2.0
Merged-chr9-40583738-4	chr9	40583235	40584235	+	950.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52352.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	1.0	7.0	6.5	0.0	4.0	1.5
Merged-chr4-62283590-4	chr4	62283063	62284063	+	950.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2866.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133613775-4	chr4	133613272	133614272	+	950.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017968, intron 4 of 7)	intron (NM_001017968, intron 4 of 7)	-11604.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	13.0	37.5	29.5	80.5	134.5	147.5
Merged-chr9-40563578-9	chr9	40563027	40564027	+	950.9111330000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-32144.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	21.5	53.0	34.5	35.5	27.0	24.5
Merged-chr12-102720959-3	chr12	102720439	102721439	+	950.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16070.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13902348-4	chr16	13901880	13902880	+	950.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289562)	promoter-TSS (NM_001289562)	765.0	NM_001039533	94184.0	Mm.171484	NM_053181	ENSMUSG00000022680	Pdxdc1	2210010A19Rik|AA415817|Kiaa0251-hp	pyridoxal-dependent decarboxylase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-69575487-4	chr18	69574965	69575965	+	950.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	229305.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60840377-4	chr13	60839904	60840904	+	950.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24012.0	NM_178098	214639.0	Mm.19839	NM_178098	ENSMUSG00000050345	4930486L24Rik	AW545031	RIKEN cDNA 4930486L24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-10419105-4	chr3	10418572	10419572	+	950.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029068, exon 8 of 8)	3' UTR (NM_029068, exon 8 of 8)	21058.0	NM_029068	74718.0	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107347593-4	chr4	107347085	107348085	+	950.839294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205156, intron 7 of 8)	intron (NM_001205156, intron 7 of 8)	-20199.0	NM_028355	72787.0	Mm.28478	NM_028355	ENSMUSG00000028614	Ndc1	2810475A17Rik|AI450313|Tmem48|sks	NDC1 transmembrane nucleoporin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81499630-2	chr10	81499130	81500130	+	950.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_010102, exon 1 of 1)	exon (NM_010102, exon 1 of 1)	507.0	NM_010102	13611.0	Mm.33065	NM_010102	ENSMUSG00000044199	S1pr4	Edg6|Lpc1|S1p4	sphingosine-1-phosphate receptor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30797767-2	chr2	30797267	30798267	+	950.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_028487, intron 4 of 6)	intron (NR_028487, intron 4 of 6)	3970.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-15986327-4	chr16	15985791	15986791	+	950.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 7 of 18)	AT_rich|Low_complexity|Low_complexity	99005.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23416725-3	chr11	23416227	23417227	+	950.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190401, intron 35 of 79)	L1MC4|LINE|L1	81312.0	NM_001290655	268390.0	Mm.13148	NM_172391	ENSMUSG00000020288	Ahsa2	-	AHA1, activator of heat shock protein ATPase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-52655369-4	chr1	52654875	52655875	+	950.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133829)	TTS (NM_133829)	24670.0	NM_001142647	227094.0	Mm.83541	NM_172654	ENSMUSG00000043015	Nemp2	5330401P04Rik|9830163O08|Tmem194b	nuclear envelope integral membrane protein 2	protein-coding	1.0	14.5	9.5	6.0	13.5	18.5
Merged-chr10-59735636-4	chr10	59735133	59736133	+	950.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359267, intron 3 of 11)	intron (NM_001359267, intron 3 of 11)	33070.0	NM_001291443	216001.0	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96251332-4	chr3	96250851	96251851	+	950.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4651.0	NM_054045	97114.0	Mm.358797	NM_054045	ENSMUSG00000081058	Hist2h3c2	H3-614|H3.2-614|Hist2h3c2-ps|Hist2h3ca1|M32461	histone cluster 2, H3c2	protein-coding	4.0	12.0	6.5	3.5	4.0	12.5
Merged-chr7-46059112-4	chr7	46058597	46059597	+	950.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153057, intron 15 of 30)	intron (NM_153057, intron 15 of 30)	25401.0	NM_153057	211548.0	Mm.274811	NM_153057	ENSMUSG00000030835	Nomo1	D7Ertd156e|Nomo|pM5	nodal modulator 1	protein-coding	6.5	9.0	10.5	5.0	18.0	6.5
Merged-chr10-99332814-4	chr10	99332326	99333326	+	950.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69595.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136071527-4	chr4	136070887	136071887	+	950.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-18016.0	NM_025919	67025.0	Mm.276856	NM_025919	ENSMUSG00000059291	Rpl11	2010203J19Rik	ribosomal protein L11	protein-coding	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr5-43841691-9	chr5	43841244	43842244	+	950.796326	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009763, intron 8 of 8)	intron (NM_009763, intron 8 of 8)	22851.0	NM_009763	12182.0	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	20.5	34.5	33.0	26.0	56.0	33.0
Merged-chr11-114747975-4	chr11	114747494	114748494	+	950.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034878, intron 8 of 12)	intron (NM_001034878, intron 8 of 12)	-17395.0	NM_001102615	286942.0	Mm.308713	NM_001102615	ENSMUSG00000010021	Kif19a	Kif19	kinesin family member 19A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-88472161-4	chr12	88471641	88472641	+	950.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB7_1-LTR_MM|LTR|ERVK	-94818.0	NR_045888	71818.0	Mm.490789	NR_045888	ENSMUSG00000113434	3200001D21Rik	-	RIKEN cDNA 3200001D21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116827986-4	chr4	116827479	116828479	+	950.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6471.0	NM_146256	242642.0	Mm.279897	NM_146256	ENSMUSG00000043155	Hpdl	A830048M07Rik|BC034099|Gloxd1	4-hydroxyphenylpyruvate dioxygenase-like	protein-coding	1.0	2.5	3.0	2.0	0.5	1.5
Merged-chr16-51926839-4	chr16	51926352	51927352	+	950.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	60435.0	NR_153657	629091.0	Mm.364775	NR_153657		Gm29686	-	predicted gene, 29686	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19467782-4	chr7	19467276	19468276	+	950.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-9282.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	36.5	51.0	78.0	36.0	54.0	80.0
Merged-chr1-64324194-4	chr1	64323704	64324704	+	950.787476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-202815.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47453883-3	chr6	47453388	47454388	+	950.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012042)	promoter-TSS (NM_012042)	156.0	NM_001355551	26965.0	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	Cul-1	cullin 1	protein-coding	5.0	27.0	12.0	0.0	12.5	4.0
Merged-chr9-75283020-3	chr9	75282506	75283506	+	950.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081322, intron 25 of 40)	intron (NM_001081322, intron 25 of 40)	-23282.0	NM_010313	14697.0	Mm.17604	NM_010313	ENSMUSG00000032192	Gnb5	GBS|Gbeta5|flr	guanine nucleotide binding protein (G protein), beta 5	protein-coding	0.0	2.0	0.5	0.0	7.0	1.5
Merged-chr11-70472968-3	chr11	70472465	70473465	+	950.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12981.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77919336-3	chr9	77918835	77919835	+	950.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134255, intron 1 of 7)	(TG)n|Simple_repeat|Simple_repeat	1970.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.0	3.0	2.5	2.5	0.0	0.5
Merged-chr8-41298548-4	chr8	41298046	41299046	+	950.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023662, intron 22 of 37)	L1MA5A|LINE|L1	58787.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	11.5	23.5	23.5	4.5	20.0	11.0
Merged-chr11-75629486-2	chr11	75628986	75629986	+	950.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008850)	TTS (NM_008850)	-1534.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	1.0	6.0	5.0	1.0	7.0	4.0
Merged-chr2-125788493-4	chr2	125787998	125788998	+	950.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5628.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	33.0	42.0	24.5	39.0	45.0	38.5
Merged-chr4-19682706-4	chr4	19682200	19683200	+	950.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_074090, intron 2 of 24)	intron (NR_074090, intron 2 of 24)	26304.0	NM_177327	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-3725970-4	chr13	3725568	3726568	+	950.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78250.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	1.0	0.5	2.0	0.0	1.5	5.0
Merged-chr17-29393689-6	chr17	29393136	29394136	+	950.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32722.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	8.5	3.5	15.0	9.5	4.0	11.5
Merged-chr4-150898898-4	chr4	150898390	150899390	+	950.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020569, intron 6 of 6)	intron (NM_020569, intron 6 of 6)	11031.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117202429-7	chr4	117201921	117202921	+	950.738098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19797.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88396033-4	chr3	88395524	88396524	+	950.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025928, exon 4 of 5)	exon (NM_025928, exon 4 of 5)	-11558.0	NM_007541	12096.0	Mm.389459	NM_007541	ENSMUSG00000074483	Bglap	BGP|Bglap1|OC|OG1|mOC-A	bone gamma carboxyglutamate protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113812865-4	chr5	113812365	113813365	+	950.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-12513.0	NM_146162	231633.0	Mm.41681	NM_146162	ENSMUSG00000054675	Tmem119	AW208946|BC025600|obif	transmembrane protein 119	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-72084374-4	chr12	72083867	72084867	+	950.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026038, intron 1 of 4)	intron (NM_026038, intron 1 of 4)	946.0	NM_026038	67217.0	Mm.286120	NM_026038	ENSMUSG00000019718	L3hypdh	2810055F11Rik	L-3-hydroxyproline dehydratase (trans-)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86293518-4	chr17	86292992	86293992	+	950.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	-6314.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	0.0	0.0	1.5	0.0	1.0	0.5
Merged-chr15-39606680-4	chr15	39606185	39607185	+	950.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053271, intron 21 of 26)	intron (NM_053271, intron 21 of 26)	-52826.0	NM_001256384	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116231405-3	chr7	116230905	116231905	+	950.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305185, intron 3 of 26)	intron (NM_001305185, intron 3 of 26)	6371.0	NM_001305186	233765.0	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-53668457-3	chr7	53667946	53668946	+	950.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	223443.0	NR_105746	102466619.0		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-77468880-3	chr1	77468390	77469390	+	950.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007936, intron 3 of 17)	intron (NM_007936, intron 3 of 17)	27878.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29419040-3	chr19	29418508	29419508	+	950.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 1 of 5)	intron (NM_021396, intron 1 of 5)	8089.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-113648358-4	chr11	113647824	113648824	+	950.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1205.0	NM_013581	16834.0	Mm.261620	NM_013581	ENSMUSG00000018661	Cog1	6030445I15|Ldlb|mKIAA1381	component of oligomeric golgi complex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150981562-4	chr2	150981070	150982070	+	950.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207204, intron 1 of 23)	intron (NM_207204, intron 1 of 23)	27828.0	NM_207204	78177.0	Mm.120911	NM_207204	ENSMUSG00000068115	Ninl	4930519N13Rik|Gm1004|Gm1634|mKIAA0980	ninein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47646869-3	chr17	47646391	47647391	+	950.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198421, intron 1 of 6)	B3|SINE|B2	16201.0	NM_198421	224836.0	Mm.59393	NM_198421	ENSMUSG00000090115	Usp49	C330046L10Rik|Gm545	ubiquitin specific peptidase 49	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101465963-3	chr7	101465452	101466452	+	950.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152192, intron 3 of 31)	intron (NR_152192, intron 3 of 31)	-9424.0	NR_029791	387157.0		NR_029791	ENSMUSG00000065446	Mir139	Mirn139|mir-139|mmu-mir-139	microRNA 139	ncRNA	17.5	3.5	26.0	12.5	33.0	40.0
Merged-chr3-105050058-4	chr3	105049534	105050534	+	950.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 1 of 5)	MTD|LTR|ERVL-MaLR	2919.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-37589751-4	chr6	37589258	37590258	+	950.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59585.0	NM_145364	208665.0	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34875973-2	chr13	34875495	34876495	+	950.666626	f0_balb.idr|f0_c57.idr	intron (NM_013830, intron 1 of 14)	CpG	501.0	NM_013830	19134.0	Mm.10027	NM_013830	ENSMUSG00000021413	Prpf4b	2610037H07|Prp4|Prp4k|Prpk|cbp143	pre-mRNA processing factor 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-103092405-4	chr9	103091913	103092913	+	950.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19661.0	NM_173781	270192.0	Mm.490252	NM_173781	ENSMUSG00000032549	Rab6b	9630015C03|AI844641|C330006L04Rik|D9Bwg0185e	RAB6B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-6712474-4	chr10	6711973	6712973	+	950.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46120.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88309937-4	chr4	88309440	88310440	+	950.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081184, intron 21 of 43)	intron (NM_001081184, intron 21 of 43)	128986.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	5.0	0.0	0.5	3.5	5.5	0.5
Merged-chr8-80265128-4	chr8	80264639	80265639	+	950.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-207131.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59594756-4	chr4	59594206	59595206	+	950.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301367, intron 5 of 11)	MTC|LTR|ERVL-MaLR	13143.0	NM_024255	72479.0	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	10.0	8.0	14.5	0.0	23.0	2.5
Merged-chr15-31572518-4	chr15	31572034	31573034	+	950.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181588, intron 1 of 5)	MTD|LTR|ERVL-MaLR	3701.0	NM_181588	69574.0	Mm.28108	NM_181588	ENSMUSG00000022235	Cmbl	2310016A09Rik	carboxymethylenebutenolidase-like (Pseudomonas)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184824748-4	chr1	184824252	184825252	+	950.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133684, intron 4 of 7)	intron (NM_133684, intron 4 of 7)	-2264.0	NR_035502	100316821.0		NR_035502	ENSMUSG00000088559	Mir1981	mir-1981|mmu-mir-1981	microRNA 1981	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122463815-7	chr14	122463264	122464264	+	950.595215	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022987, intron 1 of 1)	CpG	1894.0	NM_022987	65100.0	Mm.390761	NM_022987	ENSMUSG00000041703	Zic5	1700049L20Rik|Opr	zinc finger protein of the cerebellum 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143048132-4	chr7	143047618	143048618	+	950.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110355, intron 1 of 4)	MTC|LTR|ERVL-MaLR	-4632.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	0.0	2.0	4.5	2.0	2.0	1.5
Merged-chr17-56339035-2	chr17	56338535	56339535	+	950.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172132, intron 1 of 22)	intron (NM_172132, intron 1 of 22)	12985.0	NM_001357909	193796.0	Mm.45047	NM_172132	ENSMUSG00000024201	Kdm4b	4732474L06Rik|Jmjd2b	lysine (K)-specific demethylase 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3980535-4	chr19	3980057	3981057	+	950.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177438, intron 8 of 9)	intron (NM_001177438, intron 8 of 9)	-6013.0	NM_001302479	71670.0	Mm.29735	NM_027857	ENSMUSG00000024866	Acy3	0610006H10Rik|AA3|AAIII|AW107362|Acy-3|HCBP1	aspartoacylase (aminoacylase) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-42875735-4	chr17	42875230	42876230	+	950.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009847, intron 1 of 17)	intron (NM_009847, intron 1 of 17)	694.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	49.5	218.0	123.0	74.5	126.5	120.0
Merged-chr1-127213701-3	chr1	127213242	127214242	+	950.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	8756.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.0	20.5	8.5	0.0	13.0	5.5
Merged-chr10-3697701-3	chr10	3697197	3698197	+	950.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42680.0	NM_001159942	213783.0	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	0.0	9.5	4.0	2.5	0.0	1.0
Merged-chr17-5887029-3	chr17	5886525	5887525	+	950.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025664, exon 2 of 18)	exon (NM_025664, exon 2 of 18)	45645.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101759731-3	chr11	101759209	101760209	+	950.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144831, intron 18 of 22)	intron (NM_144831, intron 18 of 22)	25601.0	NM_008815	18612.0	Mm.5025	NM_008815	ENSMUSG00000017724	Etv4	AW414408|Pea-3|Pea3	ets variant 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-115715038-4	chr3	115714501	115715501	+	950.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007901)	promoter-TSS (NM_007901)	54.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	2.5	2.0	0.0	3.0	2.0	0.0
Merged-chr8-71569221-4	chr8	71568745	71569745	+	950.5499880000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357181)	promoter-TSS (NM_001357181)	-352.0	NM_001357181	26457.0	Mm.38165	NM_011977	ENSMUSG00000031808	Slc27a1	FATP1|Fatp	solute carrier family 27 (fatty acid transporter), member 1	protein-coding	30.5	21.5	28.5	15.5	69.5	40.5
Merged-chr8-60963000-4	chr8	60962505	60963505	+	950.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007711, intron 1 of 11)	intron (NM_007711, intron 1 of 11)	-8206.0	NM_173876	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61310567-4	chr14	61310067	61311067	+	950.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177337, intron 1 of 1)	intron (NM_177337, intron 1 of 1)	814.0	NM_177337	219144.0	Mm.206566	NM_177337	ENSMUSG00000043157	Arl11	ARLTS1|C730007L20Rik	ADP-ribosylation factor-like 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109869145-4	chr8	109868648	109869648	+	950.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122594, intron 1 of 18)	CpG	545.0	NM_001122594	244650.0	Mm.23494	NM_001122594	ENSMUSG00000031732	Phlpp2	AI481772|C130044A18Rik|Phlppl	PH domain and leucine rich repeat protein phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61802066-4	chr14	61801548	61802548	+	950.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-119675.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	36.5	57.0	35.0	39.5	61.0	41.0
Merged-chr15-76235399-2	chr15	76234899	76235899	+	950.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163576, intron 8 of 9)	B3A|SINE|B2	-4021.0	NM_011117	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115135074-4	chr11	115134553	115135553	+	950.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163753, intron 1 of 8)	intron (NM_001163753, intron 1 of 8)	-1061.0	NM_145634	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-94613520-2	chr3	94613020	94614020	+	950.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011656, exon 13 of 13)	3' UTR (NM_011656, exon 13 of 13)	-30804.0	NM_029721	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	3.0	6.0	6.5	2.0	5.0	2.5
Merged-chr5-76525936-3	chr5	76525451	76526451	+	950.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-3356.0	NM_001359372	69940.0	Mm.403233	NM_027270	ENSMUSG00000036435	Exoc1	2810407P21Rik|A730011E05Rik|SEC3|Sec3l1|Sec3p	exocyst complex component 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118790823-3	chr2	118790292	118791292	+	950.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_170593, exon 8 of 8)	exon (NM_170593, exon 8 of 8)	11073.0	NM_170593	214240.0	Mm.221499	NM_170593	ENSMUSG00000040035	Disp2	AI840597|B230210L08Rik|DispB|mKIAA1742	dispatched RND tramsporter family member 2	protein-coding	10.0	0.0	1.0	5.5	0.0	2.5
Merged-chr12-84614739-4	chr12	84614229	84615229	+	950.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008992, intron 3 of 18)	intron (NM_008992, intron 3 of 18)	2737.0	NM_008992	19300.0	Mm.229109	NM_008992	ENSMUSG00000021240	Abcd4	P69r|P70R|Pxmp1l	ATP-binding cassette, sub-family D (ALD), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93079629-1	chr10	93079129	93080129	+	950.5	f0_c57.idr	intron (NM_001347060, intron 1 of 67)	MTD|LTR|ERVL-MaLR	1967.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78442228-2	chr10	78441728	78442728	+	950.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172134, intron 9 of 10)	intron (NM_172134, intron 9 of 10)	2929.0	NR_105873	102466762.0		NR_105873	ENSMUSG00000098279	Mir6908	Gm27827|mmu-mir-6908	microRNA 6908	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32971545-2	chr2	32971045	32972045	+	950.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8244.0	NR_002898	104367.0	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-85465430-2	chr9	85464930	85465930	+	950.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138280.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0.0	3.5	0.0	0.0	0.0	0.0
Merged-chr13-81231118-2	chr13	81230618	81231618	+	950.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 85 of 89)	Lx2B2|LINE|L1	267044.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-19942822-2	chr4	19942322	19943322	+	950.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20256.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-23999708-2	chr5	23999206	24000206	+	950.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001310471, intron 2 of 10)	intron (NM_001310471, intron 2 of 10)	30606.0	NM_001310471	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	9.0	14.5	6.0	14.5	4.5	16.0
Merged-chr3-137879497-4	chr3	137878988	137879988	+	950.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033155, intron 1 of 7)	RSINE1|SINE|B4	11813.0	NM_001033155	70604.0	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	18.5	40.5	37.5	23.0	41.5	41.0
Merged-chr4-95686998-2	chr4	95686498	95687498	+	950.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029347, intron 5 of 10)	intron (NM_029347, intron 5 of 10)	107577.0	NM_029347	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73908134-2	chr13	73907634	73908634	+	950.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29633.0	NM_027182	69716.0	Mm.275095	NM_027182	ENSMUSG00000021569	Trip13	2410002G23Rik|D13Ertd328e	thyroid hormone receptor interactor 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87002294-2	chr6	87001794	87002794	+	950.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177762, exon 20 of 20)	3' UTR (NM_177762, exon 20 of 20)	-7542.0	NM_001170591	56748.0	Mm.23809	NM_020045	ENSMUSG00000029993	Nfu1	0610006G17Rik|CGI-33|Hirip5	NFU1 iron-sulfur cluster scaffold	protein-coding	1.0	0.0	0.0	0.0	1.5	0.0
Merged-chr2-27011441-2	chr2	27010941	27011941	+	950.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243240, intron 1 of 2)	intron (NM_001243240, intron 1 of 2)	1515.0	NM_001243239	381356.0	Mm.150270	NM_029862	ENSMUSG00000015488	Cacfd1	5930434B04Rik|mFwe	calcium channel flower domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167631293-4	chr2	167630864	167631864	+	950.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311131, intron 1 of 4)	CpG	641.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82869703-2	chr11	82869203	82870203	+	950.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164569, intron 1 of 7)	intron (NM_001164569, intron 1 of 7)	1041.0	NM_001164570	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	16.5	8.0	3.0	12.5	11.5	3.5
Merged-chr9-63135933-2	chr9	63135433	63136433	+	950.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11047.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134561552-2	chr1	134561052	134562052	+	950.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_152895, intron 1 of 26)	CpG	1374.0	NM_152895	75605.0	Mm.28995	NM_152895	ENSMUSG00000042207	Kdm5b	2010009J12Rik|2210016I17Rik|AW556288|D1Ertd202e|Jarid1b|PLU-1|PUT1|Plu1|RBBP2H1A|Rb-Bp2|mKIAA4034	lysine (K)-specific demethylase 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70687196-4	chr11	70686697	70687697	+	950.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190379, intron 1 of 20)	intron (NM_001190379, intron 1 of 20)	908.0	NM_001190376	216874.0	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102721399-4	chr12	102720906	102721906	+	950.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16537.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92281203-2	chr5	92280703	92281703	+	950.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3022.0	NM_025972	67111.0	Mm.28890	NM_025972	ENSMUSG00000029413	Naaa	2210023K21Rik|3830414F09Rik|Asahl	N-acylethanolamine acid amidase	protein-coding	0.0	1.0	1.0	0.0	6.0	2.0
Merged-chr4-145198583-2	chr4	145198083	145199083	+	950.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3578.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr9-108003737-2	chr9	108003237	108004237	+	950.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013785, intron 1 of 5)	intron (NM_013785, intron 1 of 5)	1089.0	NM_013785	27399.0	Mm.276155	NM_013785	ENSMUSG00000032594	Ip6k1	1200016D08Rik|AU022776|Ihpk1|InsP6|InsP6k1|Itpk6	inositol hexaphosphate kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-4016445-4	chr15	4015970	4016970	+	950.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045740)	TTS (NR_045740)	-9958.0	NM_024188	67041.0	Mm.13445	NM_024188	ENSMUSG00000022186	Oxct1	2610008O03Rik|Oxct|Oxct2a|Scot-s	3-oxoacid CoA transferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71406857-4	chr8	71406361	71407361	+	950.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310502, intron 3 of 8)	intron (NM_001310502, intron 3 of 8)	849.0	NM_172756	234396.0	Mm.216549	NM_172756	ENSMUSG00000046295	Ankle1	8430438L13Rik|Ankrd41|C430003I23|Lem3	ankyrin repeat and LEM domain containing 1	protein-coding	1.5	19.5	3.5	0.0	2.0	0.5
Merged-chr19-33119142-4	chr19	33118647	33119647	+	950.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16B1|LTR|ERVL	-37965.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88186124-4	chr4	88185628	88186628	+	950.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081184, intron 10 of 43)	intron (NM_001081184, intron 10 of 43)	64088.0	NR_030478	735282.0		NR_030478	ENSMUSG00000070077	Mir491	Mirn491|mir-491|mmu-mir-491	microRNA 491	ncRNA	1.5	1.0	2.0	7.0	1.5	3.5
Merged-chr2-91183307-4	chr2	91182811	91183811	+	950.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145527)	promoter-TSS (NM_145527)	-264.0	NM_145527	228355.0	Mm.36410	NM_145527	ENSMUSG00000040687	Madd	9630059K23Rik|IG20	MAP-kinase activating death domain	protein-coding	9.0	27.0	12.5	13.0	37.5	13.5
Merged-chr19-7268919-4	chr19	7268428	7269428	+	950.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_054048, exon 2 of 13)	5' UTR (NM_054048, exon 2 of 13)	649.0	NM_001320554	104383.0	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25759842-4	chr14	25759333	25760333	+	950.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 1 of 3)	intron (NM_001101433, intron 1 of 3)	9023.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-29892525-4	chr5	29892014	29893014	+	950.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120600.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5801443-4	chr2	5800957	5801957	+	950.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133837, intron 10 of 12)	intron (NM_133837, intron 10 of 12)	-43577.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-95647054-4	chr1	95646554	95647554	+	950.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159745, intron 3 of 3)	intron (NM_001159745, intron 3 of 3)	20540.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-87688025-4	chr10	87687530	87688530	+	950.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	166235.0	NM_008777	18478.0	Mm.263539	NM_008777	ENSMUSG00000020051	Pah	AW106920	phenylalanine hydroxylase	protein-coding	6.0	10.0	2.0	0.0	7.0	4.5
Merged-chr7-45536227-4	chr7	45535727	45536727	+	950.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148927, intron 6 of 19)	RMER16_Mm|LTR|ERVK	9897.0	NM_148927	69217.0	Mm.274158	NM_148927	ENSMUSG00000040428	Plekha4	2410005C22Rik|C88169|Pepp1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding	6.0	37.0	11.0	12.0	18.5	4.5
Merged-chr5-113810243-4	chr5	113809753	113810753	+	950.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	-9901.0	NM_146162	231633.0	Mm.41681	NM_146162	ENSMUSG00000054675	Tmem119	AW208946|BC025600|obif	transmembrane protein 119	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70842719-8	chr9	70842219	70843219	+	950.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	MIR3|SINE|MIR	92089.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43711762-4	chr19	43711276	43712276	+	950.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_053103, exon 6 of 13)	exon (NM_053103, exon 6 of 13)	22087.0	NM_053103	93685.0	Mm.248237	NM_053103	ENSMUSG00000025192	Entpd7	1810012B13Rik|1810020C02Rik|2810003F23Rik|LALP1|Lysal2	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding	15.0	35.5	35.5	7.0	25.5	16.0
Merged-chr5-43845231-3	chr5	43844707	43845707	+	950.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23602.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	14.0	32.0	20.5	12.0	27.5	25.5
Merged-chr10-84060755-3	chr10	84060256	84061256	+	950.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152790, intron 2 of 4)	intron (NR_152790, intron 2 of 4)	39941.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126004202-4	chr4	126003689	126004689	+	950.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20470.0	NR_045561	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-114973403-4	chr4	114972921	114973921	+	950.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025647, intron 1 of 5)	intron (NM_025647, intron 1 of 5)	13807.0	NM_025647	66588.0	Mm.294159	NM_025647	ENSMUSG00000028719	Cmpk1	0610011D08Rik|CK|Cmpk|UMP-CMPk	cytidine monophosphate (UMP-CMP) kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12469001-4	chr19	12468495	12469495	+	950.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172442, exon 9 of 9)	3' UTR (NM_172442, exon 9 of 9)	8216.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	3.0	12.5	19.5	11.0	31.0	26.0
Merged-chr11-107675885-4	chr11	107675406	107676406	+	950.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198298, intron 30 of 31)	intron (NM_198298, intron 30 of 31)	38184.0	NR_105897	102465562.0		NR_105897	ENSMUSG00000098497	Mir6932	Gm27691|mmu-mir-6932	microRNA 6932	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88601432-4	chr5	88600929	88601929	+	950.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289777, intron 3 of 14)	Tigger7|DNA|TcMar-Tigger	17916.0	NM_001359209	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64617744-4	chr1	64617239	64618239	+	950.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025964)	promoter-TSS (NM_025964)	-571.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-44105459-4	chr14	44104929	44105929	+	950.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS4|LTR|ERV1	2542.0	NM_017388	53876.0	Mm.327386	NM_017388		Ear3	Rnase3|mR3	eosinophil-associated, ribonuclease A family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-53568398-4	chr17	53567842	53568842	+	950.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151733, intron 1 of 16)	intron (NR_151733, intron 1 of 16)	1371.0	NR_151733	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31121219-4	chr6	31120712	31121712	+	950.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	L1MA4|LINE|L1	-58119.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61915174-2	chr9	61914674	61915674	+	950.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018853)	promoter-TSS (NM_018853)	-664.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147073142-3	chr5	147072641	147073641	+	950.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	3431.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	11.5	9.5	4.0	31.0	76.0	43.0
Merged-chr17-86677087-3	chr17	86676587	86677587	+	950.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76777.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-36214686-4	chr2	36214188	36215188	+	950.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-15738.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93029604-2	chr16	93029104	93030104	+	950.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-203530.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23630418-3	chr17	23629922	23630922	+	950.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001320258, exon 10 of 10)	3' UTR (NM_001320258, exon 10 of 10)	14847.0	NM_001033339	240047.0	Mm.235343	NM_001033339	ENSMUSG00000023903	Mmp25	F730048C11Rik|Leukolysin|MMP20|MT6-MMP	matrix metallopeptidase 25	protein-coding	0.0	0.0	1.5	2.0	0.0	0.0
Merged-chr7-16782153-3	chr7	16781581	16782581	+	950.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009201, exon 1 of 9)	exon (NM_009201, exon 1 of 9)	735.0	NM_009201	20514.0	Mm.1056	NM_009201	ENSMUSG00000001918	Slc1a5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC|Slc1a7	solute carrier family 1 (neutral amino acid transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62470631-4	chr11	62470135	62471135	+	950.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039536, intron 1 of 6)	L1MB4|LINE|L1	12175.0	NM_001039536	327942.0	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126803812-4	chr8	126803296	126804296	+	950.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45224.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-64962535-4	chr18	64961981	64962981	+	950.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	-61046.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	27.5	35.5	49.0	41.0	18.0	26.0
Merged-chr9-108443532-4	chr9	108443027	108444027	+	950.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004192, intron 2 of 3)	intron (NM_001004192, intron 2 of 3)	7045.0	NM_001004192	434439.0	Mm.78372	NM_001004192	ENSMUSG00000050641	BC048562	-	cDNA sequence BC048562	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60536581-4	chr11	60536074	60537074	+	950.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-1109.0	NM_172943	268420.0	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57283991-4	chr17	57283506	57284506	+	950.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 1 of 25)	intron (NM_001163816, intron 1 of 25)	4906.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	45.5	171.5	98.5	75.0	139.0	102.0
Merged-chr3-95972391-4	chr3	95971887	95972887	+	950.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13123.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	10.0	60.5	39.5	12.0	60.0	43.5
Merged-chr7-100150606-4	chr7	100150146	100151146	+	950.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8631.0	NM_026010	67164.0	Mm.46777	NM_026010	ENSMUSG00000030725	Lipt2	2610209A20Rik	lipoyl(octanoyl) transferase 2 (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63084137-2	chr14	63083637	63084637	+	950.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	29064.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158046514-4	chr2	158046026	158047026	+	950.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027434, intron 3 of 6)	intron (NM_027434, intron 3 of 6)	18029.0	NM_001291135	70470.0	Mm.290810	NM_027434	ENSMUSG00000027651	Rprd1b	2610304G08Rik|2810446G03Rik|Crept	regulation of nuclear pre-mRNA domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95341080-4	chr4	95340570	95341570	+	950.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-216437.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128360250-2	chr6	128359750	128360750	+	950.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001326585, intron 1 of 2)	ID_B1|SINE|B4	2572.0	NM_001326586	72440.0	Mm.143908	NM_197981	ENSMUSG00000048668	Rhno1	2510047L19Rik|5930416I19Rik	RAD9-HUS1-RAD1 interacting nuclear orphan 1	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr18-23909886-2	chr18	23909386	23910386	+	950.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44802.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-64883281-4	chr14	64882812	64883812	+	950.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 4 of 9)	L1MC1|LINE|L1	66545.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	1.0	9.5	9.5	2.5	23.5	9.5
Merged-chr4-155491735-4	chr4	155491231	155492231	+	950.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160017, intron 1 of 10)	CpG	370.0	NM_001160016	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124907965-4	chr6	124907463	124908463	+	950.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008479, intron 5 of 7)	intron (NM_008479, intron 5 of 7)	3742.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62351547-4	chr15	62351037	62352037	+	950.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132086.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	6.0	1.5	9.5	5.5	2.5	4.5
Merged-chr8-25102157-8	chr8	25101750	25102750	+	950.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031257)	promoter-TSS (NM_031257)	71.0	NR_155282	74744.0	Mm.117802	NR_155282		5830408C22Rik	2700026D01Rik	RIKEN cDNA 5830408C22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100133690-3	chr15	100133191	100134191	+	950.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 3 of 37)	intron (NM_001159361, intron 3 of 37)	-20705.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29621438-3	chr6	29620936	29621936	+	950.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11587.0	NM_001347079	320938.0	Mm.276381	NM_177296	ENSMUSG00000012535	Tnpo3	5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133	transportin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-141018474-4	chr5	141017969	141018969	+	950.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17873.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140771888-4	chr5	140771384	140772384	+	950.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 2 of 3)	intron (NM_010302, intron 2 of 3)	47757.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50240532-5	chr11	50240055	50241055	+	950.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2023.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-124711088-4	chr4	124710596	124711596	+	950.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3765.0	NM_029157	75062.0	Mm.25779	NM_029157	ENSMUSG00000028902	Sf3a3	4930512K19Rik|60kDa	splicing factor 3a, subunit 3	protein-coding	0.5	3.5	5.0	1.0	9.5	6.5
Merged-chr15-31542125-4	chr15	31541602	31542602	+	950.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11065.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29848962-4	chr17	29848488	29849488	+	950.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081160, intron 6 of 15)	intron (NM_001081160, intron 6 of 15)	38894.0	NM_001081160	74762.0	Mm.40901	NM_001081160	ENSMUSG00000043557	Mdga1	1200011I03Rik|GPIM|Mamdc3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-57512900-3	chr8	57512399	57513399	+	950.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008252, intron 2 of 4)	intron (NM_008252, intron 2 of 4)	1056.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-34701721-4	chr4	34701207	34702207	+	950.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347062, intron 11 of 12)	ORR1E|LTR|ERVL-MaLR	-14269.0	NM_011895	24060.0	Mm.281885	NM_011895	ENSMUSG00000028293	Slc35a1	AA408150|AI314851	solute carrier family 35 (CMP-sialic acid transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35117062-4	chr18	35116566	35117566	+	950.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1846.0	NM_009818	12385.0	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103488992-4	chr2	103488491	103489491	+	950.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3838.0	NM_009804	12359.0	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	11.0	13.5	48.5	17.0	13.5	34.5
Merged-chr7-29523862-3	chr7	29523371	29524371	+	950.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18411.0	NM_001081028	74206.0	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79869986-4	chr11	79869480	79870480	+	950.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92407.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88107818-3	chr17	88107297	88108297	+	950.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-17715.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141137990-4	chr4	141137494	141138494	+	950.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277195, intron 1 of 3)	intron (NM_001277195, intron 1 of 3)	1802.0	NR_102344	213491.0	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26895778-2	chr17	26895278	26896278	+	950.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21313.0	NM_053173	16580.0	Mm.491138	NM_016761	ENSMUSG00000024301	Kifc5b	Hset|KNSL2|Kifc5a	kinesin family member C5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101801477-4	chr13	101801038	101802038	+	950.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33321.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47594327-4	chr17	47593817	47594817	+	950.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 3 of 6)	intron (NM_001081635, intron 3 of 6)	850.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-79955042-4	chr17	79954531	79955531	+	950.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58908.0	NM_001286647	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113047537-4	chr6	113046976	113047976	+	950.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001355266, exon 2 of 10)	exon (NM_001355266, exon 2 of 10)	1174.0	NM_008188	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-85290864-4	chr13	85290357	85291357	+	950.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1371.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	15.0	26.5	15.0	10.0	9.0	7.0
Merged-chr3-27198786-4	chr3	27198290	27199290	+	950.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	15786.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-101377158-3	chr3	101376709	101377709	+	950.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207205)	promoter-TSS (NM_207205)	84.0	NM_207205	78908.0	Mm.257997	NM_207205	ENSMUSG00000042035	Igsf3	1700016K10Rik|2810035F16Rik|4833439O17Rik|mKIAA0466	immunoglobulin superfamily, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21599153-3	chr19	21598676	21599676	+	950.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025423, intron 2 of 3)	intron (NM_025423, intron 2 of 3)	53615.0	NM_025423	66206.0	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114893968-5	chr11	114893486	114894486	+	950.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347654, intron 2 of 6)	intron (NM_001347654, intron 2 of 6)	3945.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-175693581-4	chr1	175693088	175694088	+	950.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010098)	promoter-TSS (NM_010098)	-956.0	NM_010098	13603.0	Mm.32744	NM_010098	ENSMUSG00000026525	Opn3	ERO|Ecpn	opsin 3	protein-coding	10.0	2.5	2.0	3.5	0.0	3.5
Merged-chr6-4618121-4	chr6	4617622	4618622	+	950.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145398, intron 5 of 17)	intron (NM_145398, intron 5 of 17)	17056.0	NM_145398	213819.0	Mm.270703	NM_145398	ENSMUSG00000015189	Casd1	Cas1|Cast1|SOAT	CAS1 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-112490308-3	chr2	112489812	112490812	+	950.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2652.0	NM_028844	74268.0	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135722379-4	chr5	135721856	135722856	+	950.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 2 of 15)	intron (NM_008898, intron 2 of 15)	13533.0	NR_106001	102466791.0		NR_106001	ENSMUSG00000099197	Mir7034	Gm27372|mmu-mir-7034	microRNA 7034	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129209308-4	chr6	129208820	129209820	+	950.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28705.0	NM_053109	93694.0	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-109343766-4	chr13	109343277	109344277	+	950.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	19033.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.0	0.0	0.0	1.0	0.0	0.5
Merged-chr11-120571282-4	chr11	120570762	120571762	+	950.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011032, intron 2 of 10)	intron (NM_011032, intron 2 of 10)	1991.0	NM_011032	18453.0	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	17.0	41.5	21.0	35.0	68.0	44.0
Merged-chr11-69118079-4	chr11	69117639	69118639	+	950.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2314.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	18.5	45.5	20.0	30.0	29.5	50.0
Merged-chr11-3167564-4	chr11	3167102	3168102	+	950.05835	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 7 of 32)	RLTR21|LTR|ERVK	25861.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-75553875-4	chr9	75553368	75554368	+	950.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357828, intron 1 of 10)	intron (NM_001357828, intron 1 of 10)	5789.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	2.0	9.5	6.0	3.5	0.0	3.0
Merged-chr10-86731222-4	chr10	86730726	86731726	+	950.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153595, exon 5 of 5)	exon (NM_153595, exon 5 of 5)	18461.0	NM_153595	103220.0	Mm.440762	NM_153595	ENSMUSG00000044937	Ttc41	AI449705|AU041509|Gnn	tetratricopeptide repeat domain 41	protein-coding	0.0	5.5	1.5	0.0	5.5	1.5
Merged-chr6-72636286-4	chr6	72635781	72636781	+	950.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009332, intron 4 of 11)	intron (NM_009332, intron 4 of 11)	6450.0	NR_040421	100038714.0	Mm.321330	NR_040421		Gm15401	-	predicted gene 15401	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-51939862-4	chr12	51939348	51940348	+	950.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177171, intron 11 of 35)	intron (NM_177171, intron 11 of 35)	31473.0	NM_177171	320487.0	Mm.131941	NM_177171	ENSMUSG00000035181	Heatr5a	C230081H03Rik|D930036F22Rik|mKIAA1316	HEAT repeat containing 5A	protein-coding	30.0	28.0	32.5	25.0	43.0	27.5
Merged-chr15-98807951-4	chr15	98807383	98808383	+	950.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013741)	promoter-TSS (NM_001013741)	42.0	NM_001013741	13199.0	Mm.390810	NM_001013741	ENSMUSG00000059213	Ddn	Gm748	dendrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78939194-4	chr17	78938694	78939694	+	950.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028611, intron 3 of 9)	intron (NM_028611, intron 3 of 9)	2059.0	NM_028611	73694.0	Mm.104959	NM_028611	ENSMUSG00000024082	Ndufaf7	2410091C18Rik|AL033374|PRO1853	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 7	protein-coding	16.0	5.0	10.5	2.5	2.0	1.5
Merged-chr19-23139845-2	chr19	23139345	23140345	+	950.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1381.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43610587-2	chr19	43610087	43611087	+	950.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1738.0	NM_008699	18089.0	Mm.56994	NM_008699	ENSMUSG00000044220	Nkx2-3	Nkx-2.3|Nkx2.3|tinman	NK2 homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-56134326-2	chr13	56133826	56134826	+	950.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159513, intron 1 of 8)	intron (NM_001159513, intron 1 of 8)	1224.0	NM_012015	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	3.0	7.0	5.0	3.0	17.5	4.5
Merged-chr9-121336247-2	chr9	121335747	121336747	+	950.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	-30711.0	NM_001357973	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56770801-4	chr19	56770301	56771301	+	950.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42882.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	5.5	3.5	5.0	0.5	3.5	1.5
Merged-chr4-86658725-2	chr4	86658225	86659225	+	950.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007408, intron 6 of 7)	intron (NM_007408, intron 6 of 7)	11334.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	1.0	1.0	9.0	5.0	10.5	6.0
Merged-chr6-92293187-2	chr6	92292690	92293690	+	950.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-48540.0	NM_009426	22044.0	Mm.1363	NM_009426	ENSMUSG00000005892	Trh	Pro-TRH|Trf	thyrotropin releasing hormone	protein-coding	5.0	10.5	14.5	1.0	1.0	2.5
Merged-chr19-56718302-2	chr19	56717802	56718802	+	950.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4070.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167684167-2	chr2	167683667	167684667	+	950.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-4748.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31064296-2	chr17	31063796	31064796	+	950.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 1 of 14)	intron (NM_009593, intron 1 of 14)	6602.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-79548461-3	chr14	79547965	79548965	+	950.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 2 of 8)	Lx5|LINE|L1	32791.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121282000-1	chr14	121281500	121282500	+	950.0	f1_c57bl6.idr	intron (NM_134082, intron 26 of 26)	intron (NM_134082, intron 26 of 26)	33294.0	NR_155502	320268.0	Mm.435974	NR_155502		B930095G15Rik	-	RIKEN cDNA B930095G15 gene	ncRNA	6.5	1.5	3.0	6.0	8.0	2.0
Merged-chr9-45520720-2	chr9	45520220	45521220	+	950.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-89488.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84608227-1	chr2	84607727	84608727	+	950.0	f1_c57bl6.idr	intron (NM_001355064, intron 16 of 18)	intron (NM_001355064, intron 16 of 18)	41253.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	4.0	5.5	2.0	1.0	6.5	1.5
Merged-chr2-128444336-4	chr2	128443839	128444839	+	950.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14988.0	NR_028590	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	12.5	17.5	28.5	2.5	7.5	25.0
Merged-chr2-128774606-2	chr2	128774106	128775106	+	950.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 9 of 18)	Tigger6a|DNA|TcMar-Tigger	-43697.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	9.0	11.0	11.5	1.0	11.0	9.5
Merged-chr12-102158836-1	chr12	102158336	102159336	+	950.0	f0_balb.idr	intron (NM_172152, intron 2 of 16)	intron (NM_172152, intron 2 of 16)	30109.0	NM_172152	238384.0	Mm.312448	NM_172152	ENSMUSG00000041771	Slc24a4	A930002M03Rik|AW492432|NCKX4	solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	protein-coding	0.0	0.0	1.0	2.5	2.5	2.0
Merged-chr4-59785253-2	chr4	59784753	59785753	+	950.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1398.0	NM_001013577	66209.0	Mm.51988	NM_001013577	ENSMUSG00000038544	Inip	1110054O05Rik|2610312O17Rik|AA399876|Ssbip1	INTS3 and NABP interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13245395-2	chr9	13244895	13245895	+	950.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033181, exon 1 of 1)	exon (NM_001033181, exon 1 of 1)	346.0	NM_001033181	77532.0	Mm.459434	NM_001033181	ENSMUSG00000079083	Jrkl	C030035D04Rik|HHMJG	Jrk-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59291599-2	chr15	59291099	59292099	+	950.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15349.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	3.5	0.0	1.0	0.0	0.0	0.0
Merged-chr2-26473351-2	chr2	26472851	26473851	+	950.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 17 of 33)	intron (NM_008714, intron 17 of 33)	-3232.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29816442-2	chr2	29815942	29816942	+	950.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011989, exon 13 of 13)	3' UTR (NM_011989, exon 13 of 13)	-10947.0	NM_026615	68205.0	Mm.20273	NM_026615	ENSMUSG00000069020	Urm1	2900073H19Rik	ubiquitin related modifier 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-99066181-3	chr11	99065686	99066686	+	950.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172564, exon 13 of 13)	3' UTR (NM_172564, exon 13 of 13)	23120.0	NM_172564	217169.0	Mm.262067	NM_172564	ENSMUSG00000017607	Tns4	9930017A07Rik|AA589547|AU016405|Cten	tensin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5756266-2	chr17	5755766	5756766	+	950.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42391.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18924249-2	chr2	18923749	18924749	+	950.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	MLT1A|LTR|ERVL-MaLR	73872.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-79663626-3	chr17	79663131	79664131	+	950.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201361, intron 5 of 10)	(TG)n|Simple_repeat|Simple_repeat	48731.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-46521726-1	chr13	46521226	46522226	+	950.0	f0_balb.idr	intron (NM_026056, intron 1 of 12)	L1MA5|LINE|L1	19823.0	NM_026056	67252.0	Mm.44529	NM_026056	ENSMUSG00000021373	Cap2	2810452G09Rik|AV045235	CAP, adenylate cyclase-associated protein, 2 (yeast)	protein-coding	0.0	2.5	3.0	2.0	4.0	0.0
Merged-chr16-11439668-4	chr16	11439172	11440172	+	950.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 11 of 20)	intron (NM_028964, intron 11 of 20)	34024.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113633045-2	chr5	113632545	113633545	+	950.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	10558.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27691187-7	chr2	27690645	27691645	+	949.9904789999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	13944.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144695297-3	chr2	144694764	144695764	+	949.977783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025314, intron 4 of 5)	intron (NM_025314, intron 4 of 5)	95311.0	NM_025314	66044.0	Mm.28109	NM_025314	ENSMUSG00000027430	Dtd1	0610006H08Rik|DTD|DUE-B|Hars2	D-tyrosyl-tRNA deacylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-34700392-4	chr16	34699898	34700898	+	949.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172824, intron 5 of 12)	intron (NM_172824, intron 5 of 12)	9782.0	NM_172824	239839.0	Mm.272045	NM_172824	ENSMUSG00000022833	Ccdc14	G630039H03Rik	coiled-coil domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-16229106-4	chr9	16228622	16229622	+	949.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	149109.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54699629-3	chr6	54699124	54700124	+	949.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001289740, exon 3 of 3)	3' UTR (NM_001289740, exon 3 of 3)	18000.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	5.5	7.5	4.0	0.0	0.0	2.5
Merged-chr9-90061122-4	chr9	90060623	90061623	+	949.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312649, intron 2 of 10)	intron (NM_001312649, intron 2 of 10)	6856.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	91.0	219.0	131.0	118.5	287.5	199.0
Merged-chr2-140783578-3	chr2	140783083	140784083	+	949.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 3 of 18)	intron (NM_001013802, intron 3 of 18)	-112107.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58273141-4	chr9	58272634	58273634	+	949.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19970.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4873932-4	chr11	4873414	4874414	+	949.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008698)	promoter-TSS (NM_008698)	-37.0	NM_008698	18082.0	Mm.293716	NM_008698	ENSMUSG00000034285	Nipsnap1	-	nipsnap homolog 1	protein-coding	0.0	0.0	0.5	1.0	5.5	3.0
Merged-chr5-14049226-3	chr5	14048731	14049731	+	949.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011348, intron 1 of 16)	L3|LINE|CR1	23955.0	NM_011348	20349.0	Mm.134093	NM_011348	ENSMUSG00000063531	Sema3e	6430702L12|AA408817|Semah|mKIAA0331	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132007364-4	chr4	132006863	132007863	+	949.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001128606, exon 2 of 18)	exon (NM_001128606, exon 2 of 18)	41715.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160093351-4	chr2	160092830	160093830	+	949.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76677.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	20.0	43.5	31.5	4.5	10.5	14.0
Merged-chr4-102720192-4	chr4	102719706	102720706	+	949.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-39929.0	NM_001285860	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-59496113-4	chr1	59495618	59496618	+	949.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13971.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	25.0	19.5	14.5	7.5	8.0	11.5
Merged-chr13-94301236-7	chr13	94300718	94301718	+	949.897949	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15387.0	NM_001346609	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117878418-3	chr11	117877935	117878935	+	949.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4909.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8888379-4	chr10	8887878	8888878	+	949.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2308.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.5	8.5	14.0	4.0	23.5	18.5
Merged-chr15-79752009-4	chr15	79751482	79752482	+	949.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045069, intron 3 of 3)	intron (NR_045069, intron 3 of 3)	9284.0	NR_045069	100504191.0	Mm.421420	NR_045069	ENSMUSG00000087543	Gm16576	-	predicted gene 16576	ncRNA	6.0	2.5	2.0	0.0	1.5	7.5
Merged-chr10-84147531-4	chr10	84147043	84148043	+	949.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46846.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-68880552-4	chr8	68880035	68881035	+	949.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008509)	promoter-TSS (NM_008509)	-20.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	1.0	9.0	16.0	2.5	5.5	29.0
Merged-chr19-59073259-4	chr19	59072739	59073739	+	949.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 1 of 16)	intron (NM_001114312, intron 1 of 16)	2830.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-77878053-5	chr14	77877544	77878544	+	949.8666380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3127.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	87.5	205.5	99.0	52.5	49.5	36.5
Merged-chr2-166976555-4	chr2	166976070	166977070	+	949.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109905, intron 1 of 11)	intron (NM_001109905, intron 1 of 11)	-11853.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21479168-4	chr13	21478663	21479663	+	949.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001039115, exon 1 of 3)	exon (NM_001039115, exon 1 of 3)	314.0	NM_001039115	544922.0	Mm.441300	NM_001039115	ENSMUSG00000054931	Zkscan4	AI841875|Gm11272	zinc finger with KRAB and SCAN domains 4	protein-coding	17.0	20.0	17.0	42.0	81.5	61.5
Merged-chr1-105686870-2	chr1	105686370	105687370	+	949.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029349, intron 2 of 27)	intron (NM_029349, intron 2 of 27)	23009.0	NM_029349	227446.0	Mm.337339	NM_029349	ENSMUSG00000026319	2310035C23Rik	6430401N10|Kiaa1468|Relch|mKIAA1468	RIKEN cDNA 2310035C23 gene	protein-coding	2.0	0.0	1.0	2.5	4.5	1.0
Merged-chr13-109423288-2	chr13	109422788	109423788	+	949.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	MLT1I|LTR|ERVL-MaLR	98544.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103744375-2	chr3	103743801	103744801	+	949.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NR_125731)	TTS (NR_125731)	-6300.0	NM_133859	99543.0	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	4.0	0.0	2.5	1.5	30.0	7.0
Merged-chr5-139388345-4	chr5	139387838	139388838	+	949.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	-1566.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31353641-4	chr6	31353146	31354146	+	949.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45127.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-96433907-3	chr13	96433407	96434407	+	949.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042714, intron 8 of 13)	intron (NM_001042714, intron 8 of 13)	37253.0	NM_001042714	271144.0	Mm.470057	NM_001042714	ENSMUSG00000047117	Ankdd1b	9330128J19Rik	ankyrin repeat and death domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100527210-3	chr11	100526754	100527754	+	949.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134037, intron 1 of 27)	CpG	746.0	NM_134037	104112.0	Mm.282039	NM_134037	ENSMUSG00000020917	Acly	A730098H14Rik|AW538652	ATP citrate lyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68130033-7	chr10	68129594	68130594	+	949.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 5 of 9)	intron (NM_023598, intron 5 of 9)	148632.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	20.5	22.0	15.5	23.0	38.0	17.5
Merged-chr6-97506480-4	chr6	97505983	97506983	+	949.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-18663.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	8.0	18.5	24.0	12.0	26.0	22.0
Merged-chr2-37426199-4	chr2	37425698	37426698	+	949.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_146253, exon 2 of 2)	3' UTR (NM_146253, exon 2 of 2)	-3295.0	NM_001290642	319817.0	Mm.288785	NM_001100591	ENSMUSG00000075376	Rc3h2	2900024N03Rik|9430019J22Rik|D930043C02Rik|Mnab|Rnf164	ring finger and CCCH-type zinc finger domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36564759-4	chr5	36564274	36565274	+	949.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 2 of 13)	MTEb|LTR|ERVL-MaLR	17623.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	27.5	61.5	32.0	13.5	45.5	21.0
Merged-chr11-70254174-4	chr11	70253707	70254707	+	949.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007440, intron 2 of 13)	intron (NM_007440, intron 2 of 13)	1163.0	NM_001331118	11684.0	Mm.12286	NM_007440	ENSMUSG00000000320	Alox12	9930022G08Rik|Alox12p|P-12LO	arachidonate 12-lipoxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83632982-4	chr6	83632454	83633454	+	949.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	23162.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109410751-4	chr11	109410193	109411193	+	949.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15253.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-89740945-4	chr13	89740431	89741431	+	949.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081249, intron 1 of 14)	intron (NM_001081249, intron 1 of 14)	1581.0	NM_001081249	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	1.5	0.0	0.0	0.0	1.0	0.0
Merged-chr9-24516981-3	chr9	24516471	24517471	+	949.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13831.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-133758027-3	chr3	133757530	133758530	+	949.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-213640.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55836880-4	chr1	55836379	55837379	+	949.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-94362.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	0.0	2.0	0.0	0.0	0.0	4.5
Merged-chr12-8507536-4	chr12	8507045	8508045	+	949.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7536.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	28.0	49.5	38.0	12.5	17.0	23.5
Merged-chr7-142919426-4	chr7	142918934	142919934	+	949.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19468.0	NM_009377	21823.0	Mm.1292	NM_009377	ENSMUSG00000000214	Th	-	tyrosine hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-70640404-2	chr18	70639904	70640904	+	949.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72112.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0.0	0.0	0.5	0.5	3.0	0.0
Merged-chr1-183510950-4	chr1	183510444	183511444	+	949.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91696.0	NM_001308052	78772.0	Mm.29003	NM_030175	ENSMUSG00000053461	Hhipl2	4930507C10Rik|AW208802|Hhip3	hedgehog interacting protein-like 2	protein-coding	7.0	9.5	11.0	4.5	13.0	21.0
Merged-chr14-47648407-4	chr14	47647909	47648909	+	949.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347524)	promoter-TSS (NM_001347524)	-902.0	NM_001347527	16709.0	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	52.5	91.5	100.5	36.5	130.5	81.0
Merged-chr15-100599529-4	chr15	100599032	100600032	+	949.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304965, intron 1 of 10)	CpG	452.0	NM_001304965	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	24.5	108.5	77.5	24.5	119.0	73.0
Merged-chr13-92526131-3	chr13	92525632	92526632	+	949.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173392, intron 1 of 17)	intron (NM_173392, intron 1 of 17)	4678.0	NM_173392	218441.0	Mm.259585	NM_173392	ENSMUSG00000021706	Zfyve16	AI035632|B130024H06Rik|B130031L15|mKIAA0305	zinc finger, FYVE domain containing 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23557891-4	chr16	23557392	23558392	+	949.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	-37077.0	NM_001359083	17174.0	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-48047268-4	chr4	48046773	48047773	+	949.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015743, intron 1 of 7)	CpG	1968.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90084080-4	chr3	90083587	90084587	+	949.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357581, intron 1 of 8)	intron (NM_001357581, intron 1 of 8)	4566.0	NM_001293749	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	23.0	38.5	21.5	3.5	53.5	36.5
Merged-chr11-117198260-4	chr11	117197777	117198777	+	949.6979369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1384.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-62845262-4	chr14	62844773	62845773	+	949.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	7552.0	NR_106174	102465889.0		NR_106174	ENSMUSG00000099245	Mir8098	Gm27462|mmu-mir-8098	microRNA 8098	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25848195-4	chr7	25847689	25848689	+	949.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31659.0	NM_028775	74134.0	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86220374-4	chr15	86219934	86220934	+	949.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 1 of 12)	intron (NM_145476, intron 1 of 12)	5975.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103371174-2	chr11	103370674	103371674	+	949.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 8 of 11)	MIRb|SINE|MIR	-7482.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0.0	1.0	1.0	0.0	1.5	7.0
Merged-chr16-50529740-5	chr16	50529225	50530225	+	949.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040379, intron 1 of 5)	intron (NR_040379, intron 1 of 5)	1223.0	NR_040379	619312.0	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140806492-3	chr5	140805985	140806985	+	949.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 1 of 3)	intron (NM_010302, intron 1 of 3)	23946.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59553703-3	chr4	59553196	59554196	+	949.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4332.0	NM_144904	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	1.5	2.0	1.0	1.5	2.0	1.0
Merged-chr1-192137154-3	chr1	192136644	192137644	+	949.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033536, intron 1 of 3)	CpG	246.0	NR_033536	100038712.0	Mm.474908	NR_033536	ENSMUSG00000097316	Gm10516	-	predicted gene 10516	ncRNA	11.5	12.5	19.0	10.5	15.0	12.0
Merged-chr10-84109888-4	chr10	84109375	84110375	+	949.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-9178.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	5.0	1.0	4.0	0.0	0.0	2.0
Merged-chr14-76328058-2	chr14	76327558	76328558	+	949.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	76596.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-51178207-3	chr17	51177723	51178723	+	949.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 1 of 21)	intron (NM_028162, intron 1 of 21)	1129.0	NM_028162	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-5050951-3	chr16	5050466	5051466	+	949.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356320, intron 1 of 16)	intron (NM_001356320, intron 1 of 16)	909.0	NM_001356320	170644.0	Mm.66356	NM_026666	ENSMUSG00000039473	Ubn1	1110029L11Rik|2610108L02Rik|AA673476|AW124741	ubinuclein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163754491-3	chr2	163753995	163754995	+	949.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4256.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	3.0	17.5	9.5	6.0	17.0	12.0
Merged-chr3-51648542-4	chr3	51648085	51649085	+	949.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12594.0	NM_174995	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-79732890-3	chr7	79732387	79733387	+	949.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113471)	promoter-TSS (NM_001113471)	-111.0	NM_001113471	103968.0	Mm.254917	NM_175640	ENSMUSG00000030546	Plin1	6030432J05Rik|Peri|Plin	perilipin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-22933772-4	chr2	22933282	22934282	+	949.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019501, intron 9 of 10)	intron (NM_019501, intron 9 of 10)	38260.0	NM_001355467	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32087811-4	chr16	32087312	32088312	+	949.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024464, intron 3 of 5)	intron (NM_024464, intron 3 of 5)	-8470.0	NM_177326	224105.0	Mm.234204	NM_177326	ENSMUSG00000022781	Pak2	5330420P17Rik|A130002K10Rik|AI836325|D16Ertd269e|PAK-2|mKIAA4182	p21 (RAC1) activated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106858225-4	chr9	106857720	106858720	+	949.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001015507, exon 14 of 23)	exon (NM_001015507, exon 14 of 23)	28780.0	NM_175402	109095.0	Mm.431589	NM_175402	ENSMUSG00000074102	Rbm15b	1810017N16Rik	RNA binding motif protein 15B	protein-coding	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr17-17915150-3	chr17	17914642	17915642	+	949.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27318.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-113645903-4	chr2	113645407	113646407	+	949.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 13 of 16)	intron (NM_001285459, intron 13 of 16)	-39183.0	NM_001287818	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	5.5	37.0	25.5	2.0	30.0	23.0
Merged-chr6-21955509-4	chr6	21955033	21956033	+	949.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311061, intron 4 of 11)	Lx8|LINE|L1	5918.0	NM_023626	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90085560-4	chr3	90085137	90086137	+	949.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357581, intron 1 of 8)	intron (NM_001357581, intron 1 of 8)	6116.0	NM_001293749	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	9.0	48.5	22.5	17.5	23.5	33.0
Merged-chr8-94184521-4	chr8	94184022	94185022	+	949.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5433.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99549905-4	chr7	99549364	99550364	+	949.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178220, intron 1 of 14)	intron (NM_178220, intron 1 of 14)	-2405.0	NR_029760	723840.0		NR_029760	ENSMUSG00000065571	Mir326	Mirn326|mir-326|mmu-mir-326	microRNA 326	ncRNA	13.5	27.0	16.0	21.0	17.0	21.0
Merged-chr15-78588429-2	chr15	78587929	78588929	+	949.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-6840.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	38.0	84.0	50.0	30.0	74.5	52.0
Merged-chr14-122223861-4	chr14	122223359	122224359	+	949.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029556, intron 1 of 7)	intron (NM_029556, intron 1 of 7)	9779.0	NR_015532	68245.0	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	4.5	0.0	1.0	0.0	0.0	1.0
Merged-chr7-30698310-3	chr7	30697804	30698804	+	949.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026961)	promoter-TSS (NM_026961)	-622.0	NM_026961	69147.0	Mm.307035	NM_026961	ENSMUSG00000013083	2200002J24Rik	-	RIKEN cDNA 2200002J24 gene	protein-coding	1.5	0.0	1.0	0.0	0.0	1.0
Merged-chr19-46522073-4	chr19	46521571	46522571	+	949.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	20423.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-79995795-4	chr18	79995243	79996243	+	949.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3-int|LTR|ERVL-MaLR	-51152.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	0.5	29.5	11.0	20.0	47.5	20.5
Merged-chr8-94195067-4	chr8	94194584	94195584	+	949.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	15995.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45523000-6	chr7	45522445	45523445	+	949.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008807)	TTS (NM_008807)	3323.0	NM_008654	17872.0	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21036301-4	chr5	21035801	21036801	+	949.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011203, intron 1 of 17)	RSINE1|SINE|B4	-1054.0	NM_001356590	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-82699773-4	chr10	82699243	82700243	+	949.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081218, intron 1 of 14)	CpG	736.0	NM_001081218	67933.0	Mm.127405	NM_026462	ENSMUSG00000020246	Hcfc2	1700129L13Rik|AU019838|fkls	host cell factor C2	protein-coding	10.0	17.5	8.0	5.5	6.0	18.0
Merged-chr9-64072137-4	chr9	64071632	64072632	+	949.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8629.0	NR_040743	76814.0	Mm.243771	NR_040743		Scarletltr	2600006L11Rik	Scarletltr, erythroid developmental long intergenic non-protein coding transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120087920-3	chr4	120087419	120088419	+	949.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 3 of 8)	L1M4|LINE|L1	-73287.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52269169-3	chr3	52268677	52269677	+	949.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019739, exon 1 of 3)	exon (NM_019739, exon 1 of 3)	840.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79050841-3	chr2	79050338	79051338	+	949.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	181160.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-49620105-4	chr4	49619610	49620610	+	949.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11950.0	NM_001163263	109331.0	Mm.24765	NM_182999	ENSMUSG00000028309	Rnf20	4833430L21Rik|AW540162|C79397|mKIAA4116	ring finger protein 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119991453-4	chr11	119990925	119991925	+	949.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037754, intron 6 of 13)	intron (NM_001037754, intron 6 of 13)	-23342.0	NR_037225	100526518.0		NR_037225	ENSMUSG00000105524	Mir3065	mir-3065|mmu-mir-3065	microRNA 3065	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80323041-4	chr10	80322536	80323536	+	949.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008793, exon 12 of 15)	exon (NM_008793, exon 12 of 15)	-2488.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100570653-4	chr11	100570144	100571144	+	949.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028918, intron 11 of 11)	intron (NM_028918, intron 11 of 11)	-4295.0	NM_009923	12799.0	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113017607-4	chr12	113017103	113018103	+	949.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081170, intron 1 of 23)	intron (NM_001081170, intron 1 of 23)	3095.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28395784-2	chr17	28395284	28396284	+	949.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-30568.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76799617-4	chr15	76799115	76800115	+	949.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	18555.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	9.5	18.0	11.5	5.0	11.0	17.5
Merged-chr6-50559038-2	chr6	50558538	50559538	+	949.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7436.0	NM_007808	13063.0	Mm.35389	NM_007808	ENSMUSG00000063694	Cycs	-	cytochrome c, somatic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77533510-2	chr10	77533010	77534010	+	949.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 1 of 15)	intron (NM_008404, intron 1 of 15)	3162.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120596980-2	chr11	120596480	120597480	+	949.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011568, intron 2 of 5)	intron (NM_011568, intron 2 of 5)	1385.0	NM_011568	21681.0	Mm.1886	NM_011568	ENSMUSG00000025134	Alyref	Aly|Ref1|Ref1-I|Refbp1|Tho4|Thoc4	Aly/REF export factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99436536-4	chr9	99436040	99437040	+	949.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008624, exon 1 of 6)	5' UTR (NM_008624, exon 1 of 6)	172.0	NM_008624	17532.0	Mm.2045	NM_008624	ENSMUSG00000032470	Mras	2900078C09Rik|AI326250	muscle and microspikes RAS	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40688633-2	chr19	40688133	40689133	+	949.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	B4A|SINE|B4	28863.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	7.5	11.0	1.0	2.5	0.0	4.5
Merged-chr19-46374520-2	chr19	46374020	46375020	+	949.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029186, exon 9 of 9)	exon (NM_029186, exon 9 of 9)	17640.0	NM_029186	75146.0	Mm.159290	NM_029186	ENSMUSG00000025227	Mfsd13a	4930449A08Rik|4930538D17Rik|Tmem180	major facilitator superfamily domain containing 13a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35002408-2	chr17	35001908	35002908	+	949.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011690, intron 2 of 29)	MTD|LTR|ERVL-MaLR	1501.0	NM_011690	22321.0	Mm.28420	NM_011690	ENSMUSG00000007029	Vars	Bat6|D17H6S56E|G7a|Vars2	valyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-72323239-4	chr2	72322740	72323740	+	949.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 2 of 19)	intron (NM_023057, intron 2 of 19)	37539.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9113952-4	chr13	9113442	9114442	+	949.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 1 of 17)	intron (NM_172585, intron 1 of 17)	20061.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5880135-2	chr11	5879635	5880635	+	949.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1879.0	NM_008894	18972.0	Mm.35788	NM_008894	ENSMUSG00000020471	Pold2	50kDa|p50|po1D2	polymerase (DNA directed), delta 2, regulatory subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-50029975-4	chr18	50029492	50030492	+	949.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360935)	promoter-TSS (NM_001360935)	-992.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0.0	3.5	6.0	3.0	16.0	11.5
Merged-chr7-143629734-4	chr7	143629260	143630260	+	949.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153817, exon 2 of 2)	non-coding (NR_153817, exon 2 of 2)	1690.0	NR_153817	414103.0	Mm.446579	NR_153817		E230032D23Rik	-	RIKEN cDNA E230032D23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-33089773-2	chr13	33089273	33090273	+	949.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173052, intron 4 of 6)	intron (NM_173052, intron 4 of 6)	5670.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	4.5	0.5	6.5	1.5	0.5	6.0
Merged-chr13-37803388-4	chr13	37802889	37803889	+	949.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-22649.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106232628-3	chr1	106232126	106233126	+	949.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	60757.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-73646483-4	chr16	73645980	73646980	+	949.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	695587.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81088001-2	chr10	81087501	81088501	+	949.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145365, intron 8 of 11)	B4A|SINE|B4	10871.0	NM_145365	208677.0	Mm.294693	NM_145365	ENSMUSG00000035041	Creb3l3	BC010786|CREB-H|D10Bur1e	cAMP responsive element binding protein 3-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120855629-2	chr4	120855129	120856129	+	949.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_182929, intron 1 of 7)	intron (NM_182929, intron 1 of 7)	830.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	1.0	4.0	5.0	1.0	3.5	6.5
Merged-chr10-25219376-2	chr10	25218876	25219876	+	949.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 7 of 7)	intron (NM_018747, intron 7 of 7)	-19206.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102356972-2	chr12	102356468	102357468	+	949.5	f0_c57.idr|f1_c57bl6.idr	intron (NM_177620, intron 4 of 9)	intron (NM_177620, intron 4 of 9)	73327.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	9.5	19.5	26.0	7.0	11.5	12.5
Merged-chr18-12927583-3	chr18	12927044	12928044	+	949.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207530, intron 4 of 27)	intron (NM_207530, intron 4 of 27)	14297.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108178456-4	chr12	108177964	108178964	+	949.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028262, intron 1 of 12)	CpG	820.0	NM_028262	52690.0	Mm.159185	NM_028262	ENSMUSG00000056770	Setd3	2610102I01Rik|2610305M23Rik|6030490B17Rik|D12Ertd771e	SET domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84390509-4	chr10	84390033	84391033	+	949.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 4 of 6)	intron (NM_001004363, intron 4 of 6)	49938.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13866861-4	chr16	13866360	13867360	+	949.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039533, intron 8 of 22)	intron (NM_001039533, intron 8 of 22)	36285.0	NM_001039533	94184.0	Mm.171484	NM_053181	ENSMUSG00000022680	Pdxdc1	2210010A19Rik|AA415817|Kiaa0251-hp	pyridoxal-dependent decarboxylase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-67376237-4	chr6	67375742	67376742	+	949.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008354)	promoter-TSS (NM_008354)	-54.0	NM_008354	16162.0	Mm.188337	NM_008354	ENSMUSG00000018341	Il12rb2	A930027I18Rik|IL-12RB2|Ifnm	interleukin 12 receptor, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141642258-4	chr4	141641772	141642772	+	949.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 3 of 18)	intron (NM_001347237, intron 3 of 18)	-18438.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	100.0	120.0	144.0	18.0	35.5	30.5
Merged-chr3-20026709-3	chr3	20026185	20027185	+	949.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 4 of 16)	intron (NM_080634, intron 4 of 16)	8625.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-59028140-3	chr19	59027654	59028654	+	949.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 8 of 16)	intron (NM_001114312, intron 8 of 16)	47915.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-137807774-4	chr2	137807276	137808276	+	949.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-448808.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40543712-4	chr12	40543183	40544183	+	949.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	97630.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87028953-4	chr3	87028462	87029462	+	949.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-29622.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	5.0	60.0	32.0	24.5	41.0	48.0
Merged-chr5-113873120-4	chr5	113872601	113873601	+	949.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011779, intron 2 of 10)	intron (NM_011779, intron 2 of 10)	35605.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	1.0	5.5	9.5	0.0	5.5	9.5
Merged-chr8-70600745-6	chr8	70600182	70601182	+	949.4249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133772, intron 4 of 16)	intron (NM_133772, intron 4 of 16)	6201.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	1.0	23.0	4.5	0.0	0.5	1.5
Merged-chr7-121078030-4	chr7	121077519	121078519	+	949.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3489.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24159080-4	chr17	24158581	24159581	+	949.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172935, intron 3 of 10)	intron (NM_172935, intron 3 of 10)	4652.0	NM_172935	245847.0	Mm.87319	NM_172935	ENSMUSG00000036820	Amdhd2	5730457F11Rik	amidohydrolase domain containing 2	protein-coding	2.5	2.5	1.0	6.5	9.0	9.5
Merged-chr6-129366072-4	chr6	129365571	129366571	+	949.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177686)	TTS (NM_177686)	15827.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24622757-4	chr10	24622256	24623256	+	949.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	27314.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127793464-7	chr3	127793061	127794061	+	949.404785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356430, intron 2 of 2)	intron (NM_001356430, intron 2 of 2)	2904.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	59.0	380.5	230.5	147.5	254.5	164.5
Merged-chr6-149409093-4	chr6	149408614	149409614	+	949.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009753, exon 1 of 9)	5' UTR (NM_009753, exon 1 of 9)	130.0	NM_009753	12121.0	Mm.177181	NM_009753	ENSMUSG00000003452	Bicd1	B830009D06Rik|bic-D 1	BICD cargo adaptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98957958-3	chr13	98957468	98958468	+	949.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26597.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	80.0	116.0	95.5	15.0	8.0	6.0
Merged-chr13-51908761-4	chr13	51908268	51909268	+	949.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62093.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128855607-4	chr2	128855112	128856112	+	949.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8320.0	NM_024237	70370.0	Mm.5107	NM_024237	ENSMUSG00000027386	Fbln7	1600015H20Rik|AI464334|TM14	fibulin 7	protein-coding	20.0	59.5	25.5	16.0	59.5	27.5
Merged-chr18-68189950-4	chr18	68189452	68190452	+	949.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-37994.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110627444-4	chr7	110626915	110627915	+	949.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009627)	promoter-TSS (NM_009627)	-242.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152813855-4	chr1	152813380	152814380	+	949.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 3 of 15)	RLTR28|LTR|ERVL	13727.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21842330-4	chr16	21841835	21842835	+	949.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47988.0	NR_037957	100043489.0	Mm.326535	NR_037957	ENSMUSG00000097290	1300002E11Rik	1500026P21Rik	RIKEN cDNA 1300002E11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-100998247-6	chr3	100997704	100998704	+	949.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167906, intron 8 of 8)	(GA)n|Simple_repeat|Simple_repeat	-28541.0	NM_001013026	74044.0	Mm.270961	NM_001013026	ENSMUSG00000033222	Ttf2	4632434F22Rik|8030447N19|AV218430	transcription termination factor, RNA polymerase II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-151070006-4	chr5	151069514	151070514	+	949.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359985, intron 3 of 12)	intron (NM_001359985, intron 3 of 12)	117407.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-99028441-2	chr6	99027941	99028941	+	949.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001197322)	promoter-TSS (NM_001197322)	-143.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-179845064-4	chr1	179844555	179845555	+	949.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41040.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107244274-2	chr11	107243774	107244774	+	949.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 6 of 9)	intron (NR_153311, intron 6 of 9)	-54893.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156841945-2	chr1	156841454	156842454	+	949.333374	f0_balb.idr|f1_balb.idr	intron (NM_028333, intron 1 of 4)	intron (NM_028333, intron 1 of 4)	2931.0	NM_028333	72713.0	Mm.389206	NM_028333	ENSMUSG00000033544	Angptl1	2810039D03Rik|ANG3|ANGPT3|ANGY|ARP1	angiopoietin-like 1	protein-coding	7.0	0.0	11.0	11.5	2.5	23.0
Merged-chr11-105181977-3	chr11	105181449	105182449	+	949.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027956)	promoter-TSS (NR_027956)	422.0	NM_001294329	24086.0	Mm.126976	NM_011903	ENSMUSG00000020694	Tlk2	4933403M19Rik|PKU-alpha|PKUalpha|Tlk	tousled-like kinase 2 (Arabidopsis)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44765777-4	chr16	44765292	44766292	+	949.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021325)	promoter-TSS (NM_021325)	56.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120149998-3	chr11	120149495	120150495	+	949.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361699, intron 1 of 16)	intron (NM_001361699, intron 1 of 16)	1356.0	NM_001361698	72055.0	Mm.253403	NM_024249	ENSMUSG00000061306	Slc38a10	1810073N04Rik	solute carrier family 38, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142272701-4	chr3	142272137	142273137	+	949.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190854, intron 8 of 12)	PB1D11|SINE|Alu	-103212.0	NM_001277216	12167.0	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99781557-4	chr7	99781051	99782051	+	949.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14387.0	NM_146356	258353.0	Mm.377450	NM_146356	ENSMUSG00000073997	Olfr521	MOR101-2	olfactory receptor 521	protein-coding	4.0	23.5	12.0	7.0	24.0	21.5
Merged-chr5-110809390-3	chr5	110808887	110809887	+	949.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347394, intron 1 of 27)	intron (NM_001347394, intron 1 of 27)	694.0	NM_009469	22241.0	Mm.271898	NM_009469	ENSMUSG00000029512	Ulk1	AU041434|Unc51.1|mKIAA0722	unc-51 like kinase 1	protein-coding	2.5	30.5	25.5	5.5	19.0	19.5
Merged-chr5-146231736-3	chr5	146231243	146232243	+	949.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001359990, exon 1 of 13)	exon (NM_001359990, exon 1 of 13)	493.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	0.0	6.0	7.0	5.5	2.5	2.0
Merged-chr11-77688002-3	chr11	77687493	77688493	+	949.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024205, intron 1 of 3)	intron (NM_001024205, intron 1 of 3)	1854.0	NM_001024205	68564.0	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31397854-3	chr14	31397391	31398391	+	949.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	19786.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-122896869-2	chr4	122896369	122897369	+	949.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-10793.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	5.5	8.0	12.0	4.0	6.0	0.5
Merged-chr1-92749601-3	chr1	92749101	92750101	+	949.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82044.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44360803-3	chr10	44360330	44361330	+	949.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358596, intron 6 of 6)	intron (NM_001358596, intron 6 of 6)	1154.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132591745-3	chr2	132591238	132592238	+	949.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-6458.0	NR_033468	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31190779-4	chr6	31190282	31191282	+	949.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 1 of 2)	intron (NR_110470, intron 1 of 2)	27692.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25448132-4	chr8	25447622	25448622	+	949.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	-70637.0	NM_001079909	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119436250-4	chr8	119435760	119436760	+	949.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027950)	promoter-TSS (NM_027950)	-902.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-45595527-4	chr11	45595005	45596005	+	949.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-212578.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr10-17775318-4	chr10	17774831	17775831	+	949.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20888.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	29.5	57.0	36.0	15.5	43.0	33.0
Merged-chr18-42762128-3	chr18	42761537	42762537	+	949.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028392, intron 1 of 8)	intron (NM_028392, intron 1 of 8)	137469.0	NR_073583	72930.0	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12806413-3	chr19	12805913	12806913	+	949.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134152, intron 2 of 8)	intron (NM_134152, intron 2 of 8)	7834.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	29.5	34.5	55.0	73.5	138.5	87.5
Merged-chr8-126581004-4	chr8	126580510	126581510	+	949.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	12426.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	3.5	6.5	3.5	2.5	10.0	7.0
Merged-chr4-53826459-4	chr4	53825965	53826965	+	949.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028053, intron 1 of 5)	intron (NM_028053, intron 1 of 5)	420.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-12557286-3	chr4	12556786	12557786	+	949.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-349551.0	NM_173746	208820.0	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122641591-4	chr10	122641092	122642092	+	949.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6747.0	NR_105839	102465223.0		NR_105839	ENSMUSG00000098522	Mir6412	Gm27364|mmu-mir-6412	microRNA 6412	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144569757-3	chr3	144569211	144570211	+	949.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053102)	promoter-TSS (NM_053102)	505.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119126595-3	chr11	119126088	119127088	+	949.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27549.0	NR_105899	102465563.0		NR_105899	ENSMUSG00000098704	Mir6934	Gm27523|mmu-mir-6934	microRNA 6934	ncRNA	0.0	0.0	0.0	4.0	5.0	0.5
Merged-chr12-52049547-4	chr12	52049050	52050050	+	949.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21487.0	NM_008159	14762.0	Mm.12890	NM_008159	ENSMUSG00000035148	Gpr33	-	G protein-coupled receptor 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168229527-8	chr2	168229045	168230045	+	949.212524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132310, intron 1 of 11)	intron (NR_132310, intron 1 of 11)	834.0	NM_010072	13480.0	Mm.422657	NM_010072	ENSMUSG00000078919	Dpm1	AI118379|AI194292	dolichol-phosphate (beta-D) mannosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71224514-4	chr6	71224023	71225023	+	949.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160127, intron 6 of 9)	intron (NM_001160127, intron 6 of 9)	24644.0	NM_017399	14080.0	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70841193-4	chr9	70840686	70841686	+	949.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	93622.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	14.0	31.5	17.5	13.0	32.0	17.5
Merged-chr17-67340513-4	chr17	67340026	67341026	+	949.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	ID_B1|SINE|B4	13933.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37209148-4	chr19	37208665	37209665	+	949.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027314, intron 1 of 5)	intron (NM_027314, intron 1 of 5)	1620.0	NM_001164336	69104.0	Mm.175989	NM_027314	ENSMUSG00000023307	March5	1810015H18Rik|2310008I22Rik|2700055A20Rik|5730499H23Rik|E130202O05Rik|MARCH-V|MITOL|Marchv|Rnf153	membrane-associated ring finger (C3HC4) 5	protein-coding	9.0	2.0	1.5	7.5	2.0	1.5
Merged-chr9-35268494-3	chr9	35267993	35268993	+	949.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175411)	promoter-TSS (NM_175411)	612.0	NM_028040	71989.0	Mm.273515	NM_028040	ENSMUSG00000032044	Rpusd4	2410001E19Rik	RNA pseudouridylate synthase domain containing 4	protein-coding	0.5	2.0	0.0	16.0	5.0	9.5
Merged-chr12-55430160-4	chr12	55429675	55430675	+	949.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	31350.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-172477940-3	chr2	172477458	172478458	+	949.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5404.0	NM_029608	76426.0	Mm.46148	NM_029608	ENSMUSG00000027505	Fam209	1700029J11Rik	family with sequence similarity 209	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-20944365-4	chr17	20943860	20944860	+	949.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-1094.0	NM_016891	51792.0	Mm.294138	NM_016891	ENSMUSG00000007564	Ppp2r1a	6330556D22Rik|PP2A|PR65	protein phosphatase 2, regulatory subunit A, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163698268-3	chr2	163697721	163698721	+	949.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011106, intron 1 of 3)	intron (NM_011106, intron 1 of 3)	4184.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96660924-6	chr15	96660382	96661382	+	949.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-17969.0	NM_001166458	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81327906-2	chr7	81327406	81328406	+	949.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 19 of 21)	intron (NM_008803, intron 19 of 21)	17328.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-125371045-2	chr1	125370612	125371612	+	949.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie18a|DNA|hAT-Charlie	64615.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr8-69921611-2	chr8	69921111	69922111	+	949.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 3 of 12)	intron (NM_001286450, intron 3 of 12)	-19053.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	18.5	41.0	21.0	18.5	23.0	12.0
Merged-chr2-128395492-4	chr2	128394952	128395952	+	949.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	33899.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95862031-4	chr3	95861531	95862531	+	949.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001355759)	TTS (NM_001355759)	-6146.0	NR_151629	70767.0	Mm.279872	NM_027541	ENSMUSG00000015748	Prpf3	3632413F13Rik	pre-mRNA processing factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133205060-4	chr4	133204519	133205519	+	949.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7517.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	4.5	29.0	31.5	13.5	32.0	24.0
Merged-chr11-20656083-4	chr11	20655582	20656582	+	949.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24105.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	4.5	0.0	2.0	0.0	1.5	0.0
Merged-chr13-45005325-4	chr13	45004809	45005809	+	949.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3213.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74775933-4	chr1	74775430	74776430	+	949.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009526, intron 1 of 3)	intron (NM_009526, intron 1 of 3)	4038.0	NM_009526	22420.0	Mm.268282	NM_009526	ENSMUSG00000033227	Wnt6	AA409270|Wnt-6	wingless-type MMTV integration site family, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100403548-5	chr15	100403193	100404193	+	949.1099849999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008732, intron 9 of 16)	intron (NM_008732, intron 9 of 16)	19362.0	NM_001146161	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	3.5	4.5	14.0	4.0	19.0	24.0
Merged-chr5-123391552-4	chr5	123391047	123392047	+	949.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	-3251.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-121334476-4	chr1	121333983	121334983	+	949.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-1894.0	NM_178082	72999.0	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	0.0	0.5	5.5	3.0	13.0	5.5
Merged-chr7-111370753-4	chr7	111370227	111371227	+	949.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-248052.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53893213-3	chr11	53892723	53893723	+	949.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-1520.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134455629-4	chr5	134455135	134456135	+	949.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081462, intron 1 of 29)	intron (NM_001081462, intron 1 of 29)	627.0	NM_001081465	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78863317-3	chr15	78862801	78863801	+	949.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-7772.0	NM_025622	107753.0	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	33.5	93.0	71.0	38.0	90.0	67.0
Merged-chr7-67962043-4	chr7	67961569	67962569	+	949.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 1 of 20)	intron (NM_010513, intron 1 of 20)	9812.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102430124-5	chr12	102429694	102430694	+	949.048767	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	CT-rich|Low_complexity|Low_complexity	9619.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	18.0	7.0	9.0	10.0	22.5	16.0
Merged-chr10-7052891-4	chr10	7052387	7053387	+	949.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29702.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	20.5	23.0	24.5	52.0	85.0	55.0
Merged-chr4-128983478-4	chr4	128982990	128983990	+	949.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-9734.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-38767357-4	chr12	38766866	38767866	+	949.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11C_MM|LTR|ERVK	-12716.0	NM_001347379	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.0	0.5	0.0	1.0	1.5	0.5
Merged-chr12-3110031-4	chr12	3109531	3110531	+	949.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	-125760.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-48821626-4	chr9	48821129	48822129	+	949.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033324, intron 2 of 6)	intron (NM_001033324, intron 2 of 6)	14316.0	NM_001033324	235320.0	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding	2.0	25.0	17.0	11.5	0.0	3.5
Merged-chr2-181496266-8	chr2	181495768	181496768	+	949.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291201)	promoter-TSS (NM_001291201)	-874.0	NM_001291203	66314.0	Mm.136648	NM_025482	ENSMUSG00000000827	Tpd52l2	2810411G23Rik|AU016537|C86069|D54	tumor protein D52-like 2	protein-coding	69.0	156.5	96.5	77.0	114.5	91.5
Merged-chr6-83653337-8	chr6	83652827	83653827	+	949.0083619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016751, intron 3 of 6)	intron (NM_016751, intron 3 of 6)	2789.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	26.0	53.5	33.5	29.0	57.0	69.5
Merged-chr17-50388940-4	chr17	50388451	50389451	+	949.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95331.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	90.5	130.5	145.5	16.0	38.0	32.0
Merged-chr6-114257846-2	chr6	114257346	114258346	+	949.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24789.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147351094-2	chr4	147350594	147351594	+	949.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	175228.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55447825-2	chr11	55447325	55448325	+	949.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 3 of 3)	B2_Mm1t|SINE|B2	13383.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24573356-2	chr16	24572856	24573856	+	949.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 4 of 12)	intron (NM_178665, intron 4 of 12)	44042.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71474801-1	chr17	71474301	71475301	+	949.0	f0_balb.idr	intron (NM_028887, intron 1 of 47)	CpG	542.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	33.0	44.5	42.5	11.0	35.5	41.5
Merged-chr7-141628964-2	chr7	141628464	141629464	+	949.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357068, intron 17 of 21)	intron (NM_001357068, intron 17 of 21)	8263.0	NR_106030	102466798.0		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-48912363-2	chr6	48911863	48912863	+	949.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7377.0	NM_001161621	76507.0	Mm.213898	NM_029638	ENSMUSG00000029811	Aoc1	1600012D06Rik|Abp1|DAO	amine oxidase, copper-containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85378830-2	chr12	85378330	85379330	+	949.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4113.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-164060251-4	chr1	164059745	164060745	+	949.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B2|LTR|ERVL	-1831.0	NM_001164059	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-52429630-3	chr4	52429133	52430133	+	949.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045175)	TTS (NR_045175)	9331.0	NR_045175	72648.0	Mm.391869	NR_045175	ENSMUSG00000085763	Smc2os	2700081L22Rik	structural maintenance of chromosomes 2, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120112158-2	chr10	120111658	120112658	+	949.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080446, intron 1 of 12)	RLTR17B_Mm|LTR|ERVK	807.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	0.5	4.5	4.5	2.5	5.0	9.0
Merged-chr17-88040961-3	chr17	88040488	88041488	+	949.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081034, intron 1 of 22)	intron (NM_001081034, intron 1 of 22)	23944.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	8.0	7.5	5.5	18.0	59.5	28.5
Merged-chr8-36250850-2	chr8	36250332	36251332	+	949.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1316.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	14.5	46.0	23.0	28.5	46.5	20.0
Merged-chr13-58129997-1	chr13	58129497	58130497	+	949.0	f1_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1441.0	NM_029872	77134.0	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	23.0	45.5	32.5	27.5	32.0	24.5
Merged-chr15-66823148-3	chr15	66822648	66823648	+	949.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	8681.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-6467061-2	chr18	6466561	6467561	+	949.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007935, intron 1 of 13)	intron (NM_007935, intron 1 of 13)	23585.0	NR_035446	100316773.0		NR_035446	ENSMUSG00000084514	Mir1893	Mirn1893|mmu-mir-1893	microRNA 1893	ncRNA	0.0	0.0	0.0	1.0	0.0	0.5
Merged-chr9-44384268-2	chr9	44383737	44384737	+	949.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_021395, exon 9 of 26)	exon (NM_021395, exon 9 of 26)	4747.0	NM_021395	12282.0	Mm.116721	NM_021395	ENSMUSG00000032115	Hyou1	AI415631|CBP-140|Cab140|Grp170|Orp150	hypoxia up-regulated 1	protein-coding	0.0	1.5	0.0	0.0	0.0	0.5
Merged-chr5-21784590-4	chr5	21784083	21785083	+	949.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011188)	promoter-TSS (NM_011188)	582.0	NM_009584	22791.0	Mm.266312	NM_009584	ENSMUSG00000029014	Dnajc2	AU020218|MIDA1|Zrf1|Zrf2	DnaJ heat shock protein family (Hsp40) member C2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-109933287-2	chr9	109932787	109933787	+	949.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205332, intron 1 of 17)	intron (NM_001205332, intron 1 of 17)	1513.0	NM_008633	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129626071-4	chr2	129625573	129626573	+	949.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355158, intron 7 of 8)	intron (NM_001355158, intron 7 of 8)	30611.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	16.0	31.0	6.0	5.5	14.5	26.0
Merged-chr5-136167407-1	chr5	136166907	136167907	+	949.0	f1_c57bl6.idr	intron (NM_178751, intron 1 of 2)	MLTR11B|LTR|ERVK	3249.0	NM_178751	269717.0	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	0.0	0.0	2.5	0.0	0.0	1.0
Merged-chr9-48672045-1	chr9	48671545	48672545	+	949.0	f1_c57bl6.idr	intron (NM_001033324, intron 4 of 6)	intron (NM_001033324, intron 4 of 6)	-66922.0	NM_001311062	18113.0	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	1.0	7.0	0.0	0.0	1.0	0.0
Merged-chr1-77213821-3	chr1	77213313	77214313	+	949.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	282955.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163665283-2	chr2	163664783	163665783	+	949.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 2 of 4)	intron (NM_001039390, intron 2 of 4)	6825.0	NM_001164053	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84868321-2	chr10	84867821	84868821	+	949.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024918, intron 11 of 17)	intron (NM_001024918, intron 11 of 17)	30173.0	NM_027689	71137.0	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr2-32571267-2	chr2	32570767	32571767	+	949.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010073, exon 2 of 4)	exon (NM_010073, exon 2 of 4)	409.0	NM_010073	13481.0	Mm.22001	NM_010073	ENSMUSG00000026810	Dpm2	AW557993|R75484	dolichol-phosphate (beta-D) mannosyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25430578-2	chr2	25430078	25431078	+	949.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007379, intron 1 of 47)	intron (NM_007379, intron 1 of 47)	1904.0	NM_007379	11305.0	Mm.2210	NM_007379	ENSMUSG00000026944	Abca2	AI413825|Abc2|D2H0S1474E|mKIAA1062	ATP-binding cassette, sub-family A (ABC1), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131394680-3	chr1	131394170	131395170	+	949.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 4 of 22)	intron (NM_001081011, intron 4 of 22)	-115107.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	10.0	15.0	20.0	1.5	24.0	11.5
Merged-chr9-111044333-2	chr9	111043833	111044833	+	949.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	12911.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148065281-2	chr4	148064781	148065781	+	949.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22783.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-36775451-2	chr9	36774951	36775951	+	949.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7873.0	NM_008408	16430.0	Mm.2863	NM_008408	ENSMUSG00000032116	Stt3a	AA408947|BB081708|Itm1	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165992012-2	chr2	165991512	165992512	+	949.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008679)	promoter-TSS (NM_008679)	-625.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	3.0	9.5	4.0	1.0	7.0	4.5
Merged-chr17-55955266-2	chr17	55954766	55955766	+	949.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_108021, exon 3 of 3)	non-coding (NR_108021, exon 3 of 3)	2643.0	NM_015766	50498.0	Mm.256798	NM_015766	ENSMUSG00000003206	Ebi3	EBI-3|IL-27	Epstein-Barr virus induced gene 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120308360-2	chr11	120307860	120308860	+	949.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	39053.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122617213-4	chr10	122616699	122617699	+	949.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31140.0	NR_105839	102465223.0		NR_105839	ENSMUSG00000098522	Mir6412	Gm27364|mmu-mir-6412	microRNA 6412	ncRNA	0.0	6.5	3.5	0.5	3.5	3.5
Merged-chr4-141789000-1	chr4	141788500	141789500	+	949.0	f1_c57bl6.idr	exon (NM_172338, exon 2 of 15)	exon (NM_172338, exon 2 of 15)	1644.0	NM_172338	214063.0	Mm.39102	NM_172338	ENSMUSG00000040697	Dnajc16	2900037O03Rik|4732437J24Rik|D030060M24|mKIAA0962	DnaJ heat shock protein family (Hsp40) member C16	protein-coding	0.0	6.5	0.5	0.0	2.5	2.5
Merged-chr8-82997066-4	chr8	82996569	82997569	+	949.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 2 of 6)	intron (NM_177378, intron 2 of 6)	133713.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	25.5	24.5	12.0	24.5	19.5	8.5
Merged-chr9-73044875-4	chr9	73044371	73045371	+	948.979126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023635)	promoter-TSS (NM_023635)	61.0	NM_001301230	11891.0	Mm.34867	NM_023635	ENSMUSG00000032202	Rab27a	2210402C08Rik|2410003M20Rik|4933437C11Rik|ash	RAB27A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9656765-4	chr3	9656262	9657262	+	948.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46677.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127421710-4	chr10	127421208	127422208	+	948.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359246, intron 1 of 23)	intron (NM_001359246, intron 1 of 23)	841.0	NM_001359243	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105746697-4	chr1	105746177	105747177	+	948.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173187, intron 26 of 28)	intron (NM_173187, intron 26 of 28)	-34046.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	3.0	17.0	7.5	5.0	6.0	20.5
Merged-chr15-101316011-4	chr15	101315518	101316518	+	948.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22806.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97994764-5	chr11	97994211	97995211	+	948.9381099999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207231, intron 2 of 5)	intron (NM_207231, intron 2 of 5)	1462.0	NM_207231	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34264869-7	chr17	34264413	34265413	+	948.9285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_207105, exon 2 of 6)	exon (NM_207105, exon 2 of 6)	1686.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	79.0	171.0	101.5	73.5	140.0	74.0
Merged-chr9-120073310-4	chr9	120072787	120073787	+	948.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4991.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-21998329-4	chr6	21997801	21998801	+	948.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081351, intron 1 of 21)	intron (NM_001081351, intron 1 of 21)	12391.0	NM_001081351	214642.0	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119944807-4	chr11	119944282	119945282	+	948.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037754, intron 1 of 13)	intron (NM_001037754, intron 1 of 13)	1690.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	0.5	3.0	1.5	0.0	0.0	1.0
Merged-chr10-7923645-4	chr10	7923152	7924152	+	948.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359534, intron 2 of 6)	intron (NM_001359534, intron 2 of 6)	29413.0	NM_001359534	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108749221-3	chr8	108748709	108749709	+	948.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	34565.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.0	15.5	2.5	2.0	6.0	4.0
Merged-chr19-60819330-3	chr19	60818825	60819825	+	948.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026437, intron 3 of 8)	intron (NM_026437, intron 3 of 8)	7770.0	NM_001347464	67894.0	Mm.26148	NM_026437	ENSMUSG00000024993	Fam45a	1810055E12Rik	family with sequence similarity 45, member A	protein-coding	129.0	236.0	186.5	85.0	176.0	118.5
Merged-chr12-41349601-4	chr12	41349118	41350118	+	948.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	L1MA9|LINE|L1	136439.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-123399080-4	chr7	123398581	123399581	+	948.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025304, intron 1 of 10)	intron (NM_025304, intron 1 of 10)	-8736.0	NM_001355050	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114397878-4	chr6	114397377	114398377	+	948.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317126)	promoter-TSS (NM_001317126)	-59.0	NM_001317125	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-44334218-4	chr2	44333730	44334730	+	948.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 13 of 14)	intron (NM_001301831, intron 13 of 14)	-268906.0	NR_040622	320872.0	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74371899-3	chr11	74371406	74372406	+	948.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7235.0	NM_001011851	258153.0	Mm.376124	NM_001011851	ENSMUSG00000058275	Olfr412	MOR127-5P	olfactory receptor 412	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81520227-4	chr10	81519736	81520736	+	948.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010304, intron 1 of 6)	intron (NM_010304, intron 1 of 6)	3989.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145889431-4	chr2	145888899	145889899	+	948.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13842.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	95.5	245.0	167.0	59.5	153.5	122.5
Merged-chr6-82805187-4	chr6	82804664	82805664	+	948.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER45B|DNA|hAT-Tip100	-30710.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105149681-4	chr4	105149224	105150224	+	948.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER58B|DNA|hAT-Charlie	-7623.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123340402-4	chr4	123339899	123340899	+	948.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007558, intron 1 of 6)	intron (NM_007558, intron 1 of 6)	2853.0	NM_001256019	12163.0	Mm.439749	NM_007558	ENSMUSG00000032726	Bmp8a	Bmp7r1|OP-2|OP2	bone morphogenetic protein 8a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-19892360-4	chr4	19891854	19892854	+	948.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175406, intron 2 of 7)	intron (NM_175406, intron 2 of 7)	30212.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121845725-6	chr5	121845212	121846212	+	948.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3285.0	NM_175474	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32040223-4	chr9	32039702	32040702	+	948.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-75934.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27534876-4	chr17	27534338	27535338	+	948.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21736.0	NM_001166536	15361.0	Mm.4438	NM_016660	ENSMUSG00000046711	Hmga1	AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy	high mobility group AT-hook 1	protein-coding	0.0	8.0	0.0	0.5	0.0	2.5
Merged-chr17-33943546-5	chr17	33943033	33944033	+	948.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020603, intron 7 of 14)	intron (NM_020603, intron 7 of 14)	2810.0	NM_020603	57315.0	Mm.2437	NM_020603	ENSMUSG00000024312	Wdr46	2310007I04Rik|Bing4|C78447|C78559	WD repeat domain 46	protein-coding	32.0	44.0	62.5	22.5	86.0	57.5
Merged-chr4-133707124-4	chr4	133706659	133707659	+	948.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080819, intron 4 of 19)	intron (NM_001080819, intron 4 of 19)	9949.0	NR_106086	102465707.0		NR_106086	ENSMUSG00000104566	Mir7227	mmu-mir-7227	microRNA 7227	ncRNA	4.0	59.0	39.0	29.0	74.0	39.0
Merged-chr12-46710224-3	chr12	46709735	46710735	+	948.788879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021361, intron 4 of 4)	L2a|LINE|L2	108540.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88482242-3	chr7	88481730	88482730	+	948.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028238, intron 2 of 2)	intron (NM_028238, intron 2 of 2)	51957.0	NM_028238	72433.0	Mm.276669	NM_028238	ENSMUSG00000030559	Rab38	2310011F14Rik|AU043391|cht	RAB38, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-81572984-3	chr17	81572487	81573487	+	948.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	RMER19B2|LTR|ERVK	165400.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47672572-3	chr17	47672082	47673082	+	948.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198421, exon 3 of 7)	exon (NM_198421, exon 3 of 7)	-15028.0	NR_045945	100415787.0	Mm.392206	NR_045945	ENSMUSG00000084880	Tomm6os	Gm14872|Prickle4os	translocase of outer mitochondrial membrane 6, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60106171-11	chr11	60105666	60106666	+	948.7727050000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009021, intron 1 of 5)	CpG	1153.0	NM_009021	19377.0	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108784969-4	chr6	108784471	108785471	+	948.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026011, intron 1 of 6)	intron (NM_026011, intron 1 of 6)	1912.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	21.5	34.5	30.0	5.0	22.0	22.5
Merged-chr1-132384455-4	chr1	132383948	132384948	+	948.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178874, intron 1 of 4)	intron (NM_178874, intron 1 of 4)	5870.0	NM_001311107	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0.0	3.5	4.0	2.5	1.5	5.5
Merged-chr4-129051412-4	chr4	129050916	129051916	+	948.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6855.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80161664-4	chr18	80161119	80162119	+	948.767822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-10137.0	NM_175028	240442.0	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36134749-4	chr1	36134240	36135240	+	948.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	9573.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108444813-2	chr3	108444318	108445318	+	948.75	f0_balb.idr|f0_c57.idr	intron (NM_011319, intron 1 of 11)	CpG	441.0	NM_011319	20226.0	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	6.0	10.0	2.5	4.5	26.5	1.0
Merged-chr6-135364562-4	chr6	135364034	135365034	+	948.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001288628, intron 1 of 5)	intron (NM_001288628, intron 1 of 5)	1603.0	NM_001288628	13730.0	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	4.0	1.5	9.5	19.5	22.5	6.5
Merged-chr11-88993781-4	chr11	88993294	88994294	+	948.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5609.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	3.0	19.5	3.5	1.0	11.5	12.5
Merged-chr2-83812692-4	chr2	83812192	83813192	+	948.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175514)	promoter-TSS (NM_175514)	-36.0	NM_175514	241520.0	Mm.330351	NM_175514	ENSMUSG00000048388	Fam171b	D430039N05Rik	family with sequence similarity 171, member B	protein-coding	0.0	4.0	5.0	0.0	2.5	3.5
Merged-chr1-167554245-3	chr1	167553777	167554777	+	948.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44085.0	NM_009107	20183.0	Mm.3475	NM_009107	ENSMUSG00000015843	Rxrg	Nr2b3	retinoid X receptor gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85487954-4	chr12	85487489	85488489	+	948.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14099.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180641191-7	chr1	180640727	180641727	+	948.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_120498)	promoter-TSS (NR_120498)	77.0	NR_120498	72568.0	Mm.275044	NM_175186	ENSMUSG00000058729	Lin9	2700022J23Rik|Bara|Lin-9|TGS|TGS1|mLin-9	lin-9 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138740349-4	chr5	138739844	138740844	+	948.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-14737.0	NM_030565	80752.0	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-107984796-4	chr5	107984279	107985279	+	948.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	ID_B1|SINE|B4	2298.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	36.0	24.0	31.0	15.0	18.5	44.0
Merged-chr5-34519587-4	chr5	34519063	34520063	+	948.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5584.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-6194295-3	chr7	6193785	6194785	+	948.7000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2805.0	NM_178028	232836.0	Mm.246599	NM_178028	ENSMUSG00000034660	Galp	-	galanin-like peptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80151304-4	chr10	80150808	80151808	+	948.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347117, intron 2 of 7)	CT-rich|Low_complexity|Low_complexity	1626.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-125471578-4	chr1	125471171	125472171	+	948.699402	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-35944.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119249172-4	chr11	119248681	119249681	+	948.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175430, intron 11 of 18)	intron (NM_175430, intron 11 of 18)	-18782.0	NM_001159324	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	2.5	3.5	0.0	0.0	0.5	0.0
Merged-chr6-122600365-4	chr6	122599876	122600876	+	948.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134391, intron 1 of 7)	MRLTR33|LTR|ERVK	2068.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	75.0	272.5	132.5	52.5	218.5	83.0
Merged-chr3-105059059-4	chr3	105058544	105059544	+	948.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5898.0	NM_030249	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0.0	2.5	0.0	0.0	0.0	0.0
Merged-chr14-73123957-4	chr14	73123465	73124465	+	948.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18545.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18996982-3	chr2	18996441	18997441	+	948.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	1180.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28444147-4	chr7	28443639	28444639	+	948.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039192, intron 4 of 6)	intron (NM_001039192, intron 4 of 6)	3202.0	NM_001039192	63986.0	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146410398-4	chr6	146409882	146410882	+	948.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 9 of 56)	intron (NM_019923, intron 9 of 56)	91841.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	17.0	44.0	28.0	16.5	37.0	17.5
Merged-chr1-135699600-6	chr1	135699122	135700122	+	948.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20441.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64531337-4	chr17	64530846	64531846	+	948.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045899, intron 1 of 3)	intron (NR_045899, intron 1 of 3)	24244.0	NR_045899	100043582.0	Mm.11170	NR_045899	ENSMUSG00000073377	AU016765	-	expressed sequence AU016765	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90255097-4	chr3	90254636	90255636	+	948.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357152, intron 1 of 9)	intron (NM_001357152, intron 1 of 9)	1278.0	NM_001357152	74343.0	Mm.35627	NM_028881	ENSMUSG00000027936	Crtc2	4632407F12Rik|Torc2	CREB regulated transcription coactivator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43093895-3	chr17	43093409	43094409	+	948.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	64382.0	NR_045155	545207.0	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51843014-4	chr13	51842497	51843497	+	948.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3678.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140568467-4	chr5	140567966	140568966	+	948.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3399.0	NM_030022	77998.0	Mm.160040	NM_030022	ENSMUSG00000036586	Grifin	E130101O17Rik	galectin-related inter-fiber protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59037824-4	chr15	59037320	59038320	+	948.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	44206.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-67876973-4	chr14	67876459	67877459	+	948.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177780, intron 2 of 51)	intron (NM_177780, intron 2 of 51)	-17214.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	3.5	15.0	6.0	9.5	10.5	10.0
Merged-chr19-34420618-4	chr19	34420121	34421121	+	948.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54514.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	26.5	46.5	25.0	17.5	12.0	8.5
Merged-chr2-91205620-4	chr2	91205161	91206161	+	948.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357067, intron 3 of 10)	intron (NM_001357067, intron 3 of 10)	2749.0	NM_007387	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	15.0	40.0	35.5	10.5	48.0	27.0
Merged-chr1-138458297-4	chr1	138457776	138458776	+	948.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161481.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51824093-4	chr10	51823607	51824607	+	948.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-66913.0	NR_045158	71090.0	Mm.72588	NM_027670	ENSMUSG00000062224	4933411G06Rik	-	Sumo1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165062230-4	chr2	165061736	165062736	+	948.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027852, intron 1 of 7)	intron (NR_027852, intron 1 of 7)	6600.0	NM_011611	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	38.0	64.5	43.5	22.0	23.0	24.0
Merged-chr8-33968478-4	chr8	33968000	33969000	+	948.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	-38637.0	NM_001042675	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	2.5	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22433200-4	chr8	22432724	22433724	+	948.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21884.0	NM_020560	57312.0	Mm.289402	NM_020560	ENSMUSG00000031533	Mrps31	1500002D03Rik|AA960481|Imogen38|Imogen44	mitochondrial ribosomal protein S31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119396204-4	chr11	119395701	119396701	+	948.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	5729.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	16.5	24.0	28.0	31.0	24.5	44.5
Merged-chr6-89362675-8	chr6	89362179	89363179	+	948.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008881)	promoter-TSS (NM_008881)	-66.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65680768-4	chr3	65680270	65681270	+	948.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037923, intron 2 of 2)	intron (NM_001037923, intron 2 of 2)	14542.0	NM_001166659	624866.0	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding	0.0	0.0	4.0	1.5	0.0	0.0
Merged-chr5-30840900-4	chr5	30840416	30841416	+	948.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133350, intron 1 of 6)	intron (NM_133350, intron 1 of 6)	-20891.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101627870-4	chr11	101627335	101628335	+	948.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025654)	promoter-TSS (NM_025654)	-114.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160237935-4	chr2	160237431	160238431	+	948.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	89563.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-117900832-4	chr6	117900344	117901344	+	948.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166432, intron 1 of 3)	intron (NM_001166432, intron 1 of 3)	504.0	NM_001166432	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-33162401-4	chr11	33161901	33162901	+	948.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008722, intron 1 of 10)	intron (NM_008722, intron 1 of 10)	805.0	NM_001252261	18148.0	Mm.485384	NM_008722	ENSMUSG00000057113	Npm1	B23|NO38|Npm	nucleophosmin 1	protein-coding	4.0	13.0	8.0	6.5	21.5	14.0
Merged-chr9-77733939-4	chr9	77733446	77734446	+	948.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-20589.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	3.0	10.0	1.0	3.0	10.0	2.0
Merged-chr12-74804278-2	chr12	74803776	74804776	+	948.5	f0_balb.idr|f1_balb.idr	Intergenic	GSAT_MM|Satellite|Satellite	373056.0	NM_172805	238271.0	Mm.44465	NM_172805	ENSMUSG00000034402	Kcnh5	Eag2	potassium voltage-gated channel, subfamily H (eag-related), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-116734851-2	chr10	116734351	116735351	+	948.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_131036, intron 2 of 2)	intron (NR_131036, intron 2 of 2)	5598.0	NR_131036	75878.0	Mm.370607	NR_131036	ENSMUSG00000112924	4930579P08Rik	-	RIKEN cDNA 4930579P08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125355776-2	chr5	125355276	125356276	+	948.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-14682.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.0	0.0	0.0	0.0	2.5	0.0
Merged-chr4-140987726-4	chr4	140987232	140988232	+	948.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164366, intron 1 of 28)	intron (NM_001164366, intron 1 of 28)	859.0	NM_001164366	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-71018157-2	chr12	71017657	71018657	+	948.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081195, intron 2 of 23)	AT_rich|Low_complexity|Low_complexity	2190.0	NM_001081195	238247.0	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78388338-3	chr10	78387843	78388843	+	948.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20202.0	NR_105872	102465547.0		NR_105872	ENSMUSG00000098376	Mir6907	Gm27351|mmu-mir-6907	microRNA 6907	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84680185-2	chr18	84679694	84680694	+	948.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023149, intron 3 of 11)	B2_Mm2|SINE|B2	1865.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54772219-4	chr6	54771722	54772722	+	948.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-44694.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	24.5	30.5	59.0	32.0	25.5	47.5
Merged-chr11-101646273-4	chr11	101645795	101646795	+	948.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18346.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-114797715-4	chr9	114797175	114798175	+	948.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027294, intron 1 of 3)	intron (NM_027294, intron 1 of 3)	-15682.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	0.0	2.5	3.0	1.0	1.5	5.0
Merged-chr12-115621373-2	chr12	115620873	115621873	+	948.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	74421.0	NR_105810	102465205.0		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr3-106474401-4	chr3	106473915	106474915	+	948.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR104_Mam|LTR|Gypsy	-8016.0	NM_001093754	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52743051-2	chr2	52742551	52743551	+	948.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019667)	promoter-TSS (NM_019667)	-902.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-70790500-3	chr6	70789983	70790983	+	948.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009075, intron 1 of 8)	intron (NM_009075, intron 1 of 8)	1692.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-75547041-2	chr9	75546531	75547531	+	948.5	f0_balb.idr|f0_c57.idr	intron (NM_001357828, intron 1 of 10)	intron (NM_001357828, intron 1 of 10)	12626.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	16.5	18.0	29.0	12.0	8.5	10.5
Merged-chr10-51451241-2	chr10	51450741	51451741	+	948.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29371.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-41599916-4	chr3	41599426	41600426	+	948.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130184, intron 6 of 10)	B3|SINE|B2	35046.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr3-9786808-4	chr3	9786298	9787298	+	948.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 1 of 7)	intron (NM_053182, intron 1 of 7)	46881.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87020524-2	chr11	87020024	87021024	+	948.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26762.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-39778292-4	chr15	39777787	39778787	+	948.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022722, intron 9 of 9)	intron (NM_022722, intron 9 of 9)	-18758.0	NR_045788	100503072.0	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	-	predicted gene 16291	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119101722-2	chr9	119101222	119102222	+	948.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177117)	promoter-TSS (NM_177117)	-756.0	NM_177117	320256.0	Mm.110648	NM_177117	ENSMUSG00000038060	Dlec1	D630005C06Rik	deleted in lung and esophageal cancer 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113548469-2	chr5	113547969	113548969	+	948.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1951.0	NM_177292	320916.0	Mm.102783	NM_177292	ENSMUSG00000063430	Wscd2	4933413A10Rik|C530024P05Rik|Gm450	WSC domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-74773429-4	chr18	74772893	74773893	+	948.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	5062.0	NR_028560	100217466.0		NR_028560		Scarna17	MBII-119	small Cajal body-specific RNA 17	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19366275-2	chr7	19365775	19366775	+	948.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001010836, intron 1 of 12)	B2_Mm2|SINE|B2	5059.0	NM_001010836	333654.0	Mm.333640	NM_001010836	ENSMUSG00000040734	Ppp1r13l	AV260376|IASPP|Nkip1|wa3	protein phosphatase 1, regulatory (inhibitor) subunit 13 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40687528-7	chr19	40687126	40688126	+	948.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	27856.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	5.0	33.0	18.5	8.0	9.5	22.5
Merged-chr10-82128100-6	chr10	82127655	82128655	+	948.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163064, intron 1 of 3)	CpG	142.0	NM_001163064	216177.0	Mm.482395	NM_001163064	ENSMUSG00000078435	AU041133	-	expressed sequence AU041133	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-115661251-4	chr3	115660750	115661750	+	948.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53805.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	10.0	0.0	0.0	6.0	0.0	1.0
Merged-chr1-40113355-2	chr1	40112855	40113855	+	948.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010555, intron 4 of 8)	intron (NM_010555, intron 4 of 8)	27262.0	NM_001360800	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-41394600-2	chr8	41394115	41395115	+	948.5	f0_balb.idr|f1_balb.idr	Intergenic	B1_Mus2|SINE|Alu	-19918.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	27.5	2.5	23.5	6.0	35.5	22.0
Merged-chr17-34862676-4	chr17	34862173	34863173	+	948.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142706)	promoter-TSS (NM_001142706)	-159.0	NM_008198	14962.0	Mm.653	NM_008198	ENSMUSG00000090231	Cfb	AI195813|AI255840|B|Bf|C2|Fb|H2-Bf	complement factor B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111553453-3	chr9	111552962	111553962	+	948.466675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114381.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	51.5	83.5	45.0	7.0	19.5	8.0
Merged-chr11-63098830-4	chr11	63098316	63099316	+	948.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30166.0	NM_001302258	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120741219-4	chr8	120740703	120741703	+	948.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301811, intron 2 of 8)	intron (NM_001301811, intron 2 of 8)	2564.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78247951-4	chr11	78247459	78248459	+	948.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359106, intron 1 of 3)	RLTR12E|LTR|ERVK	2208.0	NM_001359106	20316.0	Mm.20755	NM_009143	ENSMUSG00000002064	Sdf2	AI853825	stromal cell derived factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122770984-3	chr5	122770491	122771491	+	948.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199676, intron 1 of 16)	intron (NM_001199676, intron 1 of 16)	8419.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-33030499-4	chr4	33029989	33030989	+	948.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019586)	promoter-TSS (NM_019586)	834.0	NR_036602	100504166.0	Mm.426309	NR_036602	ENSMUSG00000085037	4933421O10Rik	-	RIKEN cDNA 4933421O10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44652185-4	chr9	44651681	44652681	+	948.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21052.0	NM_001277851	58866.0	Mm.45380	NM_021481	ENSMUSG00000032098	Treh	2210412M19Rik	trehalase (brush-border membrane glycoprotein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr1-152606405-4	chr1	152605893	152606893	+	948.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	L3|LINE|CR1	18824.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92648149-8	chr1	92647638	92648638	+	948.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153114, intron 1 of 4)	intron (NM_153114, intron 1 of 4)	703.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-23202790-4	chr1	23202270	23203270	+	948.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69499.0	NR_029533	387225.0		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21666683-3	chr16	21666187	21667187	+	948.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001881, intron 1 of 1)	intron (NM_001001881, intron 1 of 1)	27978.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32499479-3	chr2	32498945	32499945	+	948.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME2|LINE|L1	-35914.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117150126-4	chr10	117149672	117150672	+	948.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1698.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158773025-4	chr2	158772528	158773528	+	948.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027975, intron 1 of 3)	intron (NM_027975, intron 1 of 3)	4929.0	NM_027975	71878.0	Mm.85162	NM_027975	ENSMUSG00000027654	Fam83d	2310007D09Rik|BB104611	family with sequence similarity 83, member D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-32487566-4	chr6	32487071	32488071	+	948.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-23570.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91055138-4	chr1	91054667	91055667	+	948.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	1723.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139330768-4	chr4	139330259	139331259	+	948.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20015.0	NM_025337	110198.0	Mm.482154	NM_025337	ENSMUSG00000028743	Akr7a5	0610025K21Rik|Afar|Afar1|Akr7a2	aldo-keto reductase family 7, member A5 (aflatoxin aldehyde reductase)	protein-coding	11.5	2.5	10.5	3.0	0.0	1.5
Merged-chr9-44723153-4	chr9	44722680	44723680	+	948.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153537, intron 4 of 21)	intron (NM_153537, intron 4 of 21)	12018.0	NM_153537	102693.0	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	3.5	0.0	0.0	0.0	0.0	0.5
Merged-chr5-102072239-4	chr5	102071736	102072736	+	948.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2315.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100915327-2	chr5	100914827	100915827	+	948.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69098.0	NM_172715	231510.0	Mm.271911	NM_172715	ENSMUSG00000029314	Gpat3	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|Agpat9|GPAT-3|mGPAT3	glycerol-3-phosphate acyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171638891-4	chr1	171638376	171639376	+	948.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347184, intron 3 of 5)	intron (NM_001347184, intron 3 of 5)	3024.0	NR_106151	102465784.0		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	9.5	33.0	20.5	19.5	5.5	16.5
Merged-chr4-142095757-4	chr4	142095248	142096248	+	948.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11444.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	1.0	13.5	29.0	11.0	44.0	18.0
Merged-chr12-76551505-3	chr12	76551009	76552009	+	948.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	-3584.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-69265471-4	chr17	69264969	69265969	+	948.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 12 of 21)	intron (NM_001355736, intron 12 of 21)	11737.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8899352-3	chr17	8898858	8899858	+	948.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347321, intron 2 of 21)	intron (NM_001347321, intron 2 of 21)	49373.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34065453-3	chr8	34064951	34065951	+	948.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	42363.0	NM_001293758	22428.0	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	0.0	6.5	6.5	2.0	5.0	4.5
Merged-chr3-104637790-3	chr3	104637302	104638302	+	948.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009196)	promoter-TSS (NM_009196)	-862.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41963011-4	chr10	41962496	41963496	+	948.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 10 of 17)	intron (NM_001034858, intron 10 of 17)	55386.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73445275-1	chr14	73444775	73445775	+	948.3333130000001	f0_balb.idr	Intergenic	Intergenic	-59986.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-18453174-4	chr9	18452706	18453706	+	948.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028935)	TTS (NM_028935)	20353.0	NM_028935	72230.0	Mm.289689	NM_028160	ENSMUSG00000074500	Zfp558	1700007A21Rik|4932704I17Rik|Zfp558-ps	zinc finger protein 558	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24578793-4	chr5	24578287	24579287	+	948.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1320.0	NM_001190443	27407.0	Mm.21629	NM_013853	ENSMUSG00000028953	Abcf2	0710005O05Rik|Drr3|E430001O06	ATP-binding cassette, sub-family F (GCN20), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17409697-3	chr16	17409199	17410199	+	948.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023348, intron 1 of 4)	intron (NM_023348, intron 1 of 4)	-3385.0	NM_001001983	224020.0	Mm.5718	NM_001001983	ENSMUSG00000041720	Pi4ka	Pik4ca	phosphatidylinositol 4-kinase alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55795733-6	chr16	55795274	55796274	+	948.267822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26364.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55479011-7	chr14	55478521	55479521	+	948.257141	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030686, exon 1 of 5)	exon (NM_030686, exon 1 of 5)	263.0	NM_030686	28200.0	Mm.27427	NM_030686	ENSMUSG00000022210	Dhrs4	AI043103|AI790593|CR|D14Ucla2|NDRD|PHCR|PSCD|RRD|mouNRDR	dehydrogenase/reductase (SDR family) member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165703234-4	chr1	165702719	165703719	+	948.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	4875.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76612815-4	chr11	76612366	76613366	+	948.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35127.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	7.0	20.0	9.5	6.5	15.5	14.5
Merged-chr10-59879042-4	chr10	59878525	59879525	+	948.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019965)	promoter-TSS (NM_019965)	-566.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138972645-4	chr1	138972105	138973105	+	948.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	4884.0	NM_181347	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40402431-3	chr19	40401935	40402935	+	948.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034964)	promoter-TSS (NM_001034964)	-125.0	NM_001034964	20411.0	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.0	0.5	2.5	4.0	0.0	0.0
Merged-chr3-8246428-4	chr3	8245918	8246918	+	948.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	216680.0	NR_033512	620966.0	Mm.301719	NR_033512		Gm6194	1700003N22Rik|EG620966	transmembrane protein 189 pseudogene	pseudo	0.0	2.5	0.0	0.0	0.0	1.0
Merged-chr4-126467907-4	chr4	126467401	126468401	+	948.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153403, intron 1 of 18)	intron (NM_153403, intron 1 of 18)	682.0	NM_001317174	236511.0	Mm.30800	NM_153403	ENSMUSG00000041530	Ago1	Eif2c1	argonaute RISC catalytic subunit 1	protein-coding	0.0	0.0	1.5	0.0	1.0	0.5
Merged-chr6-115717826-4	chr6	115717315	115718315	+	948.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41180.0	NM_029780	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134234382-4	chr5	134233902	134234902	+	948.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4777.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118854505-4	chr14	118853929	118854929	+	948.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021386)	promoter-TSS (NM_021386)	-521.0	NM_021386	58187.0	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding	0.0	3.0	0.0	0.0	3.0	0.5
Merged-chr3-142618866-4	chr3	142618359	142619359	+	948.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010259, exon 11 of 11)	3' UTR (NM_010259, exon 11 of 11)	-1804.0	NM_010260	14469.0	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-73001734-4	chr9	73001214	73002214	+	948.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001114328, exon 5 of 8)	exon (NM_001114328, exon 5 of 8)	16210.0	NM_001286544	72278.0	Mm.268475	NM_028181	ENSMUSG00000034563	Ccpg1	1700030B06Rik|1810073J13Rik|9430028F23Rik|AI426686|AI875170|CPR8|D9Ertd392e	cell cycle progression 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118477960-5	chr11	118477470	118478470	+	948.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153103, intron 1 of 13)	ID4|SINE|ID	1138.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86516191-4	chr1	86515699	86516699	+	948.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10358.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-82647379-4	chr10	82646863	82647863	+	948.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011561, exon 8 of 10)	exon (NM_011561, exon 8 of 10)	17521.0	NR_037190	624784.0	Mm.284252	NR_037190		Gm9855	-	thymine DNA glycosylase pseudogene	pseudo	24.5	96.5	24.0	24.5	53.0	16.5
Merged-chr4-119173398-2	chr4	119172898	119173898	+	948.1875	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_183140, exon 1 of 2)	5' UTR (NM_183140, exon 1 of 2)	458.0	NM_001145935	195522.0	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	7.0	31.0	14.0	2.0	5.0	5.5
Merged-chr4-134632459-4	chr4	134631949	134632949	+	948.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 2 of 11)	intron (NM_207237, intron 2 of 11)	-64598.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-33160636-2	chr12	33160136	33161136	+	948.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_028139, intron 2 of 3)	intron (NM_028139, intron 2 of 3)	12950.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	1.0	1.5	2.0	0.0	1.0	0.0
Merged-chr11-46875837-4	chr11	46875351	46876351	+	948.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65052.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	1.5	2.5	2.0	12.0	7.0	3.5
Merged-chr9-44510227-4	chr9	44509723	44510723	+	948.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_030256, exon 9 of 9)	3' UTR (NM_030256, exon 9 of 9)	11087.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134304852-4	chr1	134304349	134305349	+	948.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001144855, intron 23 of 28)	intron (NM_001144855, intron 23 of 28)	14845.0	NM_031189	17928.0	Mm.16528	NM_031189	ENSMUSG00000026459	Myog	MYF4|bHLHc3|myo	myogenin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-54173046-2	chr10	54172546	54173546	+	948.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97124.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-20379482-2	chr8	20378982	20379982	+	948.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16280.0	NM_001177408	100040599.0	Mm.491087	NM_001177408	ENSMUSG00000074449	Gm15319	-	predicted gene 15319	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40874078-2	chr9	40873578	40874578	+	948.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178245)	promoter-TSS (NM_178245)	-49.0	NM_178245	244813.0	Mm.261652	NM_178245	ENSMUSG00000054360	Bsx	Bsx1a|Bsx1b	brain specific homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165671219-2	chr1	165670719	165671719	+	948.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	-36678.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120935242-4	chr9	120934742	120935742	+	948.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007614, intron 1 of 14)	intron (NM_007614, intron 1 of 14)	1664.0	NM_001165902	12387.0	Mm.291928	NM_007614	ENSMUSG00000006932	Ctnnb1	Bfc|Catnb|Mesc	catenin (cadherin associated protein), beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4325791-4	chr18	4325289	4326289	+	948.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27164.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-116974388-4	chr8	116973966	116974966	+	948.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027103, intron 1 of 2)	intron (NM_027103, intron 1 of 2)	4187.0	NM_001357254	69528.0	Mm.272846	NM_027103	ENSMUSG00000031847	1700030J22Rik	-	RIKEN cDNA 1700030J22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31124232-4	chr6	31123767	31124767	+	948.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-61174.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41088481-4	chr19	41087989	41088989	+	948.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011904, intron 19 of 20)	intron (NM_011904, intron 19 of 20)	-11376.0	NM_153520	226115.0	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87356795-4	chr3	87356284	87357284	+	948.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1097.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	119.0	251.0	209.0	74.0	184.0	141.0
Merged-chr11-3194798-4	chr11	3194284	3195284	+	948.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1321.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-57085771-4	chr18	57085221	57086221	+	948.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47369.0	NM_001001979	70417.0	Mm.297863	NM_001001979	ENSMUSG00000024593	Megf10	3000002B06Rik|Gm331	multiple EGF-like-domains 10	protein-coding	0.0	3.5	2.5	0.0	0.0	0.0
Merged-chr7-18873527-4	chr7	18873033	18874033	+	948.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11157.0	NM_009402	21946.0	Mm.21855	NM_009402	ENSMUSG00000030413	Pglyrp1	PGRP|PGRP-S|Pglyrp|Tag7|Tasg7|Tnfsf3l	peptidoglycan recognition protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100323780-4	chr11	100323270	100324270	+	948.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3821.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-101759939-4	chr12	101759437	101760437	+	948.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361987, intron 9 of 10)	intron (NM_001361987, intron 9 of 10)	-41414.0	NM_001082976	74413.0	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding	2.0	4.5	2.0	11.5	3.5	2.5
Merged-chr8-94093081-3	chr8	94092582	94093582	+	948.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026116, intron 1 of 16)	intron (NM_026116, intron 1 of 16)	5729.0	NM_026116	67378.0	Mm.292107	NM_026116	ENSMUSG00000031755	Bbs2	2410125H22Rik|AI447581	Bardet-Biedl syndrome 2 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70635672-4	chr8	70635164	70636164	+	948.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3208.0	NM_001330687	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	87.0	133.0	118.0	37.5	40.5	45.5
Merged-chr7-64061340-4	chr7	64060860	64061860	+	948.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92475.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140616368-4	chr5	140615847	140616847	+	948.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008494)	TTS (NM_008494)	9006.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61706646-4	chr10	61706133	61707133	+	948.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-8630.0	NM_178058	71361.0	Mm.286309	NM_153779	ENSMUSG00000020085	Aifm2	5430437E11Rik|Amid|D730001I10Rik|PRG3	apoptosis-inducing factor, mitochondrion-associated 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37893219-3	chr13	37892719	37893719	+	948.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 3 of 9)	intron (NM_001039188, intron 3 of 9)	4348.0	NM_001177869	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39226725-4	chr6	39226254	39227254	+	948.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19981.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111189335-4	chr10	111188818	111189818	+	948.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003717, intron 1 of 22)	MTC|LTR|ERVL-MaLR	24516.0	NM_175489	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100500713-6	chr7	100500100	100501100	+	948.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011671)	TTS (NM_011671)	7242.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85687005-7	chr12	85686449	85687449	+	948.0714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016767, exon 1 of 3)	exon (NM_016767, exon 1 of 3)	229.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136070159-4	chr4	136069662	136070662	+	948.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16791.0	NM_025919	67025.0	Mm.276856	NM_025919	ENSMUSG00000059291	Rpl11	2010203J19Rik	ribosomal protein L11	protein-coding	0.5	3.0	0.5	0.0	0.0	0.0
Merged-chr9-58954614-3	chr9	58954133	58955133	+	948.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008684, intron 7 of 28)	LTR41|LTR|ERVL	81808.0	NM_001042752	18007.0	Mm.42249	NM_008684	ENSMUSG00000032340	Neo1	2610028H22Rik|AI327052|D930014N22Rik|Igdcc2	neogenin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5726281-6	chr13	5725822	5726822	+	948.055542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131770.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-52674921-4	chr5	52674412	52675412	+	948.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-5211.0	NM_172490	211006.0	Mm.244719	NM_172490	ENSMUSG00000029173	Sepsecs	AA986712|D5Ertd135e|SLA|SecS	Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase	protein-coding	1.5	5.0	2.5	2.0	1.5	0.0
Merged-chr11-117727326-4	chr11	117726821	117727821	+	948.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 5 of 21)	intron (NM_198022, intron 5 of 21)	52327.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-37050490-10	chr17	37050052	37051052	+	948.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019439, intron 5 of 22)	intron (NM_019439, intron 5 of 22)	4586.0	NM_019439	54393.0	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135773952-4	chr7	135773449	135774449	+	948.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57570.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-92024546-4	chr2	92024059	92025059	+	948.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011957)	promoter-TSS (NM_011957)	-389.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-112437474-1	chr14	112436974	112437974	+	948.0	f1_balb.idr	Intergenic	ORR1A1|LTR|ERVL-MaLR	762359.0	NM_198865	75409.0	Mm.235097	NM_029273	ENSMUSG00000033214	Slitrk5	2610019D03Rik	SLIT and NTRK-like family, member 5	protein-coding	0.0	0.0	2.5	0.0	0.0	0.0
Merged-chr2-156841422-2	chr2	156840922	156841922	+	948.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291124, intron 1 of 3)	intron (NM_001291124, intron 1 of 3)	1415.0	NM_173396	228839.0	Mm.315625	NM_173396	ENSMUSG00000062175	Tgif2	4921501K24|5730599O09Rik|C80753|C81206	TGFB-induced factor homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-64941980-4	chr16	64941500	64942500	+	948.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008310, intron 2 of 2)	RLTR14|LTR|ERV1	89999.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-82364520-1	chr3	82364020	82365020	+	948.0	f1_c57bl6.idr	intron (NM_001356457, intron 4 of 13)	intron (NM_001356457, intron 4 of 13)	6333.0	NM_001356457	213582.0	Mm.271269	NM_001081230	ENSMUSG00000033900	Map9	5033421J10Rik|5330427D05Rik|ASAP|Mtap9	microtubule-associated protein 9	protein-coding	12.5	0.0	2.0	0.0	7.0	0.0
Merged-chr5-143520652-2	chr5	143520152	143521152	+	948.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347530, intron 1 of 6)	intron (NM_001347530, intron 1 of 6)	7341.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-92873524-2	chr7	92873024	92874024	+	948.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355126, intron 1 of 5)	intron (NM_001355126, intron 1 of 5)	723.0	NM_001355126	74041.0	Mm.26468	NM_028729	ENSMUSG00000030641	Ddias	4632434I11Rik|noxin	DNA damage-induced apoptosis suppressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111436007-2	chr12	111435507	111436507	+	948.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-6654.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-122014449-2	chr9	122013949	122014949	+	948.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18423.0	NM_153540	215494.0	Mm.402151	NM_153540	ENSMUSG00000066235	Pomgnt2	Ago61|C85492|Gtdc2	protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84219809-2	chr8	84219309	84220309	+	948.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172503, intron 11 of 13)	intron (NM_172503, intron 11 of 13)	-10902.0	NR_037294	100526528.0		NR_037294	ENSMUSG00000105458	Mir3074-2	mir-3074-2|mmu-mir-3074-2	microRNA 3074-2	ncRNA	5.5	45.0	18.5	15.0	20.5	8.0
Merged-chr2-30350969-2	chr2	30350469	30351469	+	948.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346806, intron 3 of 12)	L1M4a2|LINE|L1	8347.0	NM_139302	227700.0	Mm.33343	NM_139302	ENSMUSG00000026860	Sh3glb2	SPAS-1	SH3-domain GRB2-like endophilin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-60491234-2	chr9	60490734	60491734	+	948.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040426, intron 2 of 17)	intron (NM_001040426, intron 2 of 17)	19801.0	NM_001040426	207596.0	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32717040-1	chr11	32716540	32717540	+	948.0	f0_balb.idr	intron (NM_001271347, intron 3 of 12)	intron (NM_001271347, intron 3 of 12)	74485.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	2.0	0.0	5.5	3.0	0.0	3.0
Merged-chr7-98883584-2	chr7	98883084	98884084	+	948.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44739.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr4-105268891-4	chr4	105268398	105269398	+	948.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111551.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-17913617-2	chr15	17913117	17914117	+	948.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	456010.0	NR_045711	70886.0	Mm.399021	NR_045711	ENSMUSG00000098150	4921515E04Rik	-	RIKEN cDNA 4921515E04 gene	ncRNA	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr15-101146476-6	chr15	101146017	101147017	+	948.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17995.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	3.0	4.5	7.0	1.0	5.0	4.0
Merged-chr11-49982533-2	chr11	49982033	49983033	+	948.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-42798.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-59133209-2	chr12	59132709	59133709	+	948.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001165253, intron 1 of 22)	B3A|SINE|B2	1756.0	NM_001165253	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32163230-2	chr16	32162730	32163730	+	948.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_146069, exon 2 of 4)	5' UTR (NM_146069, exon 2 of 4)	2364.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93042098-2	chr16	93041598	93042598	+	948.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-216024.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-63240252-2	chr17	63239752	63240752	+	948.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 6 of 8)	intron (NM_015794, intron 6 of 8)	72721.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45242777-2	chr9	45242277	45243277	+	948.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 2 of 4)	intron (NM_001198971, intron 2 of 4)	23930.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-50803311-2	chr18	50802811	50803811	+	948.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-234612.0	NM_026108	67365.0	Mm.158150	NM_026108	ENSMUSG00000048875	Pudp	1700121L12Rik|GS1|Hdhd1|Hdhd1a	pseudouridine 5-phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73741988-3	chr15	73741450	73742450	+	948.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	-6076.0	NM_008975	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19579442-2	chr7	19578942	19579942	+	948.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022409, intron 2 of 2)	intron (NM_022409, intron 2 of 2)	2155.0	NM_022409	63872.0	Mm.23310	NM_022409	ENSMUSG00000011267	Zfp296	2210018A16Rik|Znf296	zinc finger protein 296	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31754893-2	chr16	31754393	31755393	+	948.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001252436, exon 1 of 23)	exon (NM_001252436, exon 1 of 23)	543.0	NM_001252436	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118629805-2	chr9	118629305	118630305	+	948.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 3 of 27)	intron (NM_133721, intron 3 of 27)	23096.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-33110964-4	chr12	33110443	33111443	+	948.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_015602)	TTS (NR_015602)	-18068.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	12.0	10.5	8.5	1.0	5.5	12.5
Merged-chr11-118265853-2	chr11	118265353	118266353	+	948.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033528, intron 15 of 20)	intron (NM_001033528, intron 15 of 20)	-17261.0	NM_011180	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61119317-3	chr9	61118779	61119779	+	948.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-13893.0	NR_105026	66785.0	Mm.158134	NR_105026	ENSMUSG00000111807	4933433G08Rik	-	RIKEN cDNA 4933433G08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93834233-2	chr16	93833733	93834733	+	948.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045529, intron 1 of 16)	intron (NM_001045529, intron 1 of 16)	2112.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	3.5	15.5	18.0	3.5	15.5	18.0
Merged-chr4-156210964-2	chr4	156210464	156211464	+	948.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-4963.0	NM_172417	74183.0	Mm.431343	NM_172417	ENSMUSG00000078486	Perm1	2310042D19Rik	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding	0.0	1.5	0.5	0.0	0.0	0.0
Merged-chr10-67714099-2	chr10	67713599	67714599	+	948.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-142140.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96293510-3	chr3	96292987	96293987	+	948.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010186, intron 2 of 5)	intron (NM_010186, intron 2 of 5)	482.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	40.0	104.0	113.5	33.0	95.5	79.5
Merged-chr3-30860252-2	chr3	30859752	30860752	+	948.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286994, intron 1 of 3)	L1_Mus2|LINE|L1	4302.0	NM_001286994	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72474604-2	chr8	72474079	72475079	+	948.0	f0_balb.idr|f0_c57.idr	intron (NM_001359024, intron 2 of 17)	intron (NM_001359024, intron 2 of 17)	654.0	NM_001359024	27967.0	Mm.30136	NM_138585	ENSMUSG00000052488	Cherp	5730408I11Rik|D8Wsu96e|DAN16|Scaf6	calcium homeostasis endoplasmic reticulum protein	protein-coding	30.5	160.0	119.0	66.5	143.0	111.0
Merged-chr15-100681127-1	chr15	100680627	100681627	+	948.0	f1_c57bl6.idr	intron (NM_033612, intron 6 of 7)	intron (NM_033612, intron 6 of 7)	6793.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	1.5	16.5	4.5	14.5	0.0	3.5
Merged-chr12-32017776-4	chr12	32017272	32018272	+	948.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011158, intron 2 of 10)	intron (NM_011158, intron 2 of 10)	43507.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	2.0	4.5	9.5	0.5	0.5	4.0
Merged-chr5-111141652-4	chr5	111141166	111142166	+	948.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	137522.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	33.5	66.0	42.5	61.5	58.5	43.0
Merged-chr14-64046678-2	chr14	64046178	64047178	+	948.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38732.0	NM_001081063	71037.0	Mm.19977	NM_001081063	ENSMUSG00000034623	Prss55	4933401F05Rik	protease, serine 55	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115489025-4	chr5	115488551	115489551	+	948.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4567.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	94.5	211.5	125.0	95.5	163.5	122.0
Merged-chr19-11107965-4	chr19	11107457	11108457	+	948.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027058, intron 4 of 6)	intron (NM_027058, intron 4 of 6)	22921.0	NM_027058	69369.0	Mm.391200	NM_027058	ENSMUSG00000024729	1700017D01Rik	-	RIKEN cDNA 1700017D01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152793484-4	chr2	152792974	152793974	+	947.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	35015.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89422767-4	chr6	89422276	89423276	+	947.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 4 of 6)	intron (NM_001167736, intron 4 of 6)	-60163.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111233958-4	chr8	111233466	111234466	+	947.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 1 of 25)	intron (NM_009149, intron 1 of 25)	25236.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27454918-4	chr7	27454378	27455378	+	947.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290525, intron 1 of 4)	L1MB8|LINE|L1	2460.0	NM_001290525	233016.0	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	33.5	42.0	36.5	29.5	37.0	25.0
Merged-chr11-34008687-7	chr11	34008230	34009230	+	947.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-15537.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-55203783-4	chr6	55203278	55204278	+	947.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142781, intron 1 of 17)	intron (NM_001142781, intron 1 of 17)	395.0	NM_001142781	330323.0	Mm.268997	NM_177883	ENSMUSG00000038022	Mindy4	C330043M08Rik|Fam188b|Gm1406	MINDY lysine 48 deubiquitinase 4	protein-coding	8.0	25.5	7.0	1.5	1.0	3.5
Merged-chr11-97801180-4	chr11	97800695	97801695	+	947.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010688, intron 1 of 6)	intron (NM_010688, intron 1 of 6)	1630.0	NM_010688	16796.0	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	13.5	31.0	34.5	7.5	31.0	31.0
Merged-chr1-64297023-4	chr1	64296521	64297521	+	947.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	-175632.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97957698-3	chr3	97957214	97958214	+	947.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033779, intron 1 of 1)	RSINE1|SINE|B4	27541.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-68582142-4	chr14	68581643	68582643	+	947.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021475)	promoter-TSS (NM_021475)	-71.0	NM_021475	58860.0	Mm.36742	NM_021475	ENSMUSG00000022057	Adamdec1	2210414L24Rik|AI574231|Dcsn	ADAM-like, decysin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83215770-7	chr17	83215306	83216306	+	947.9285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_134117, exon 1 of 7)	exon (NM_134117, exon 1 of 7)	523.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65466315-4	chr18	65465830	65466830	+	947.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172833, intron 12 of 15)	intron (NM_172833, intron 12 of 15)	35333.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-10129848-4	chr14	10129331	10130331	+	947.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 5 of 9)	intron (NM_001360141, intron 5 of 9)	245736.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136660045-4	chr6	136659561	136660561	+	947.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025806, intron 1 of 10)	intron (NM_025806, intron 1 of 10)	1832.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	90.5	241.0	244.5	65.5	240.5	146.0
Merged-chr9-119963436-4	chr9	119962922	119963922	+	947.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028735, intron 21 of 28)	intron (NM_028735, intron 21 of 28)	19601.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12473911-4	chr13	12473408	12474408	+	947.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133643, exon 6 of 6)	3' UTR (NM_133643, exon 6 of 6)	-12170.0	NM_001291057	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76950504-4	chr12	76950002	76951002	+	947.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361663, intron 3 of 4)	intron (NM_001361663, intron 3 of 4)	11746.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-99899718-2	chr14	99899218	99900218	+	947.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010636, intron 6 of 6)	intron (NM_010636, intron 6 of 6)	250078.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-11407573-4	chr15	11407058	11408058	+	947.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7900.0	NM_033074	110960.0	Mm.286061	NM_033074	ENSMUSG00000022241	Tars	D15Wsu59e|ThrRS	threonyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65907184-4	chr17	65906673	65907673	+	947.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-21418.0	NM_009067	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-92879609-3	chr7	92879053	92880053	+	947.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028243, intron 1 of 8)	intron (NM_028243, intron 1 of 8)	4300.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-9238501-3	chr9	9238000	9239000	+	947.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045754, intron 2 of 3)	intron (NR_045754, intron 2 of 3)	513.0	NM_027823	71544.0	Mm.334955	NM_027823	ENSMUSG00000050730	Arhgap42	9030420J04Rik|BE136619	Rho GTPase activating protein 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28192853-3	chr17	28192344	28193344	+	947.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357995, intron 2 of 13)	intron (NM_001357995, intron 2 of 13)	-14934.0	NM_027185	23853.0	Mm.204731	NM_027185	ENSMUSG00000002257	Def6	2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6	differentially expressed in FDCP 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92318789-4	chr5	92318281	92319281	+	947.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33C|LTR|ERVL	-8757.0	NM_172713	231452.0	Mm.86564	NM_172713	ENSMUSG00000029415	Sdad1	4931421J16|AA591032|AW538460	SDA1 domain containing 1	protein-coding	1.0	28.5	28.5	8.0	44.0	27.5
Merged-chr12-85345113-4	chr12	85344588	85345588	+	947.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 3 of 4)	intron (NM_026775, intron 3 of 4)	-5726.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-43349683-4	chr11	43349168	43350168	+	947.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	24793.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-54353454-4	chr3	54352974	54353974	+	947.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7633.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155812974-2	chr4	155812480	155813480	+	947.833374	f0_balb.idr|f0_c57.idr	intron (NM_207678, intron 1 of 10)	CpG	491.0	NM_207678	56036.0	Mm.23492	NM_018856	ENSMUSG00000029068	Ccnl2	1700010A01Rik|1810019L15Rik|2010319M22Rik|AA409936|AW261738|Ania-6b|HCLA-150|Pcee|SB138	cyclin L2	protein-coding	61.0	128.5	100.0	42.5	64.5	84.5
Merged-chr13-93300783-4	chr13	93300306	93301306	+	947.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2951.0	NM_147176	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-92192039-4	chr2	92191542	92192542	+	947.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035480)	promoter-TSS (NR_035480)	65.0	NR_035480	100316756.0		NR_035480	ENSMUSG00000088639	Mir1955	mir-1955|mmu-mir-1955	microRNA 1955	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90257556-4	chr9	90257039	90258039	+	947.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	13230.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	6.0	14.5	8.5	0.0	2.5	6.0
Merged-chr14-19916056-3	chr14	19915574	19916574	+	947.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285910, intron 1 of 2)	intron (NM_001285910, intron 1 of 2)	60619.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94380674-2	chr16	94380174	94381174	+	947.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_009441, intron 1 of 45)	intron (NM_009441, intron 1 of 45)	-9659.0	NM_001159617	56176.0	Mm.474449	NM_019543	ENSMUSG00000022940	Pigp	Dcrc|Dscr5	phosphatidylinositol glycan anchor biosynthesis, class P	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54937920-3	chr18	54937429	54938429	+	947.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	52251.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35232913-4	chr2	35232436	35233436	+	947.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-23423.0	NM_001206367	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-106016473-4	chr12	106015966	106016966	+	947.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029843, intron 1 of 13)	L1MD|LINE|L1	6203.0	NM_001029843	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35000257-4	chr17	34999638	35000638	+	947.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011690)	promoter-TSS (NM_011690)	608.0	NM_033075	110956.0	Mm.22506	NM_033075		D17H6S56E-5	G7e	DNA segment, Chr 17, human D6S56E 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83039356-4	chr11	83038853	83039853	+	947.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355513, intron 1 of 5)	B2_Mm2|SINE|B2	689.0	NR_073523	237887.0	Mm.341645	NM_181542	ENSMUSG00000072621	Slfn10-ps	Slfn10|mFLJ00257	schlafen 10, pseudogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64172326-4	chr13	64171822	64172822	+	947.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019986, intron 2 of 7)	intron (NM_019986, intron 2 of 7)	10456.0	NM_019986	56541.0	Mm.40989	NM_019986	ENSMUSG00000021476	Habp4	4933413D03Rik|4933428J01Rik	hyaluronic acid binding protein 4	protein-coding	3.5	13.0	23.5	4.0	27.0	30.0
Merged-chr6-122340594-4	chr6	122340079	122341079	+	947.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073364)	promoter-TSS (NR_073364)	-352.0	NM_001271579	13619.0	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35338396-4	chr12	35337888	35338888	+	947.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143491.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	5.5	6.5	12.5	5.0	9.0	7.0
Merged-chr11-115613473-4	chr11	115613025	115614025	+	947.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243584)	promoter-TSS (NM_001243584)	-556.0	NM_001243587	69674.0	Mm.390387	NM_027162	ENSMUSG00000020743	Mif4gd	1110014L05Rik|2310075G12Rik	MIF4G domain containing	protein-coding	2.5	2.0	5.5	0.0	12.5	7.5
Merged-chr14-74704023-4	chr14	74703488	74704488	+	947.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172812, intron 2 of 2)	intron (NM_172812, intron 2 of 2)	-28309.0	NM_001285423	13885.0	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98917673-4	chr11	98917189	98918189	+	947.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025779, intron 9 of 11)	intron (NM_001025779, intron 9 of 11)	9538.0	NM_011799	23834.0	Mm.20912	NM_011799	ENSMUSG00000017499	Cdc6	CDC18L	cell division cycle 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17558151-3	chr16	17557638	17558638	+	947.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145435, intron 4 of 7)	intron (NM_001145435, intron 4 of 7)	3109.0	NM_029053	74685.0	Mm.38634	NM_029053	ENSMUSG00000022759	Lrrc74b	4930451C15Rik|mCG12354|mCP17390	leucine rich repeat containing 74B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86446303-3	chr15	86445812	86446812	+	947.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358062, intron 8 of 9)	MTC|LTR|ERVL-MaLR	168637.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131174842-4	chr2	131174344	131175344	+	947.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027641)	promoter-TSS (NM_027641)	-34.0	NM_027641	70997.0	Mm.252722	NM_027641	ENSMUSG00000027329	Spef1	4931426K16Rik|Clamp	sperm flagellar 1	protein-coding	6.5	15.0	5.5	9.0	8.0	7.5
Merged-chr11-34427410-4	chr11	34426908	34427908	+	947.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 27 of 51)	intron (NM_033374, intron 27 of 51)	112586.0	NM_001025382	574403.0	Mm.444796	NM_001025382	ENSMUSG00000069911	Fam196b	EG574403|Gm6041	family with sequence similarity 196, member B	protein-coding	25.5	9.0	4.0	16.0	7.5	11.5
Merged-chr10-94525136-4	chr10	94524631	94525631	+	947.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172051, intron 1 of 3)	intron (NM_172051, intron 1 of 3)	10274.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-89269889-4	chr7	89269381	89270381	+	947.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 4 of 14)	intron (NM_001360746, intron 4 of 14)	68906.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30679155-4	chr2	30678658	30679658	+	947.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1147.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-44759843-4	chr18	44759333	44760333	+	947.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085373, intron 1 of 18)	intron (NM_001085373, intron 1 of 18)	52349.0	NM_001085373	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	103.0	173.0	149.0	61.0	192.5	136.5
Merged-chr16-31759556-4	chr16	31759051	31760051	+	947.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252436, intron 1 of 22)	intron (NM_001252436, intron 1 of 22)	5201.0	NM_001252436	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39446818-4	chr18	39446322	39447322	+	947.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	40423.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124854906-3	chr6	124854416	124855416	+	947.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013534, exon 4 of 15)	exon (NM_013534, exon 4 of 15)	2771.0	NM_013534	14789.0	Mm.35708	NM_013534	ENSMUSG00000023191	P3h3	BC016431|Grcb|Leprel2	prolyl 3-hydroxylase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-66124272-7	chr2	66123735	66124735	+	947.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015736, intron 1 of 10)	CpG	558.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-145117049-4	chr5	145116557	145117557	+	947.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023142, intron 1 of 9)	intron (NM_023142, intron 1 of 9)	2801.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173535457-4	chr2	173534968	173535968	+	947.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	12876.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	4.5	17.5	13.0	6.5	12.5	7.0
Merged-chr10-43123619-4	chr10	43123115	43124115	+	947.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175407, intron 4 of 6)	Lx6|LINE|L1	50915.0	NM_175407	109205.0	Mm.153750	NM_175407	ENSMUSG00000038248	Sobp	2900009C16Rik|5330439J01Rik|JXC1|jc	sine oculis binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49204547-3	chr11	49204033	49205033	+	947.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024846, intron 1 of 4)	intron (NM_001024846, intron 1 of 4)	1033.0	NM_009562	22720.0	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12862558-3	chr18	12862087	12863087	+	947.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001252493, exon 1 of 15)	5' UTR (NM_001252493, exon 1 of 15)	126.0	NM_001252493	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173879433-3	chr1	173878928	173879928	+	947.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170853, intron 2 of 9)	intron (NM_001170853, intron 2 of 9)	759.0	NM_001170853	100040462.0	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	107.5	293.5	141.0	221.5	503.5	267.5
Merged-chr2-181409792-4	chr2	181409278	181410278	+	947.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028125)	TTS (NM_028125)	14610.0	NM_027656	72147.0	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-50443730-4	chr3	50443275	50444275	+	947.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011990)	promoter-TSS (NM_011990)	-162.0	NM_011990	26570.0	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.0	0.0	0.5	0.0	0.0	3.0
Merged-chr9-107553352-2	chr9	107552852	107553852	+	947.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243748, intron 1 of 5)	ID_B1|SINE|B4	-1231.0	NM_019713	56289.0	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	2.5	12.5	4.0	5.0	4.5	5.5
Merged-chr2-22743690-2	chr2	22743190	22744190	+	947.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TGAG)n|Simple_repeat|Simple_repeat	-30637.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53758840-2	chr11	53758340	53759340	+	947.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4814.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4212976-4	chr19	4212509	4213509	+	947.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1229.0	NR_132308	105948585.0	Mm.32518	NR_132308		Gm45928	Clcf1-pold4	predicted gene, 45928	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79356490-2	chr15	79355990	79356990	+	947.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304832, intron 1 of 2)	RSINE1|SINE|B4	8088.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-156255155-4	chr4	156254651	156255651	+	947.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355709, intron 1 of 10)	intron (NM_001355709, intron 1 of 10)	191.0	NM_001355709	231004.0	Mm.406833	NM_173736	ENSMUSG00000096351	Samd11	BC026991|mr-s	sterile alpha motif domain containing 11	protein-coding	0.0	0.0	2.5	0.0	0.0	1.0
Merged-chr9-61967435-3	chr9	61966938	61967938	+	947.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 5 of 7)	intron (NM_028748, intron 5 of 7)	-20639.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118651057-4	chr9	118650571	118651571	+	947.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	44362.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	27.5	41.0	25.5	17.5	63.0	29.0
Merged-chr8-57574621-4	chr8	57574128	57575128	+	947.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 2 of 11)	intron (NM_001167981, intron 2 of 11)	62785.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81072468-4	chr13	81071975	81072975	+	947.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015587, intron 1 of 1)	ERVB5_1-I_MM-int|LTR|ERVK	108401.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120262661-2	chr11	120262160	120263160	+	947.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_198423, intron 3 of 27)	intron (NM_198423, intron 3 of 27)	29713.0	NM_198423	268515.0	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	0.5	1.5	0.0	0.5	0.0	0.0
Merged-chr19-10820314-4	chr19	10819793	10820793	+	947.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009852, intron 1 of 12)	L1MC4|LINE|L1	9765.0	NM_001037801	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166657326-3	chr2	166656829	166657829	+	947.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	56503.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68555505-3	chr11	68555001	68556001	+	947.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146004)	promoter-TSS (NM_146004)	-685.0	NM_146004	215723.0	Mm.131205	NM_146004	ENSMUSG00000048329	Mfsd6l	-	major facilitator superfamily domain containing 6-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32784503-4	chr2	32784024	32785024	+	947.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025619)	promoter-TSS (NM_025619)	-119.0	NM_025619	227736.0	Mm.441499	NM_025619	ENSMUSG00000038987	Cfap157	1700019L03Rik	cilia and flagella associated protein 157	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-53848774-4	chr1	53848286	53849286	+	947.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106149)	promoter-TSS (NR_106149)	-638.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	29.5	38.5	31.5	26.0	36.0	30.5
Merged-chr10-125314258-4	chr10	125313761	125314761	+	947.5750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 1 of 5)	intron (NM_001358496, intron 1 of 5)	-5445.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59959478-4	chr9	59958958	59959958	+	947.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001101600)	TTS (NM_001101600)	8164.0	NM_001101600	665389.0	Mm.335214	NM_001101600		Gm7616	EG665389	predicted gene 7616	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22928996-4	chr11	22928437	22929437	+	947.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361661, intron 2 of 2)	MTE2b|LTR|ERVL-MaLR	-43068.0	NM_011663	22183.0	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	0.0	0.0	1.5	0.0	1.5	3.0
Merged-chr13-119366362-3	chr13	119365869	119366869	+	947.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008710, exon 12 of 17)	exon (NM_008710, exon 12 of 17)	42642.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24035118-4	chr5	24034590	24035590	+	947.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4400.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	49.5	147.0	87.5	48.0	91.5	92.5
Merged-chr10-21651652-4	chr10	21651149	21652149	+	947.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39196.0	NR_045843	432436.0	Mm.244553	NM_001004162	ENSMUSG00000056716	Gm5420	EG432436	predicted gene 5420	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8059739-4	chr10	8059232	8060232	+	947.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103609.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	8.5	14.5	10.5	10.0	19.5	4.5
Merged-chr16-20412788-4	chr16	20412283	20413283	+	947.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176839, intron 2 of 6)	intron (NM_176839, intron 2 of 6)	13611.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-12084150-4	chr4	12083687	12084687	+	947.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110955, intron 2 of 28)	RodERV21-int|LTR|ERV1	3770.0	NM_177861	329795.0	Mm.475125	NM_177861	ENSMUSG00000049488	Tmem67	5330408M12Rik|B230117O07|b2b1163.1Clo|b2b1291.1Clo	transmembrane protein 67	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-112012069-3	chr8	112011608	112012608	+	947.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130868)	promoter-TSS (NM_001130868)	749.0	NM_020584	57321.0	Mm.213064	NM_020584	ENSMUSG00000033430	Terf2ip	Rap1	telomeric repeat binding factor 2, interacting protein	protein-coding	0.0	1.5	4.0	0.0	1.5	6.0
Merged-chr2-94165024-3	chr2	94164539	94165539	+	947.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7130.0	NM_019657	56348.0	Mm.22505	NM_019657	ENSMUSG00000027195	Hsd17b12	2610510O05Rik|AI172963|KIK-I|Kik1	hydroxysteroid (17-beta) dehydrogenase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-35079792-4	chr13	35079277	35080277	+	947.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85633.0	NM_001110331	23986.0	Mm.491141	NM_011868	ENSMUSG00000021417	Eci2	Acbd2|Drs1|Hca88|Peci	enoyl-Coenzyme A delta isomerase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77621683-3	chr10	77621164	77622164	+	947.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019803)	promoter-TSS (NM_019803)	-657.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-67478712-1	chr4	67478212	67479212	+	947.5	f0_balb.idr	Intergenic	MIR3|SINE|MIR	651161.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56271215-2	chr17	56270715	56271715	+	947.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_174989, exon 2 of 2)	exon (NM_174989, exon 2 of 2)	5552.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94721956-2	chr13	94721456	94722456	+	947.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66987.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79499653-2	chr3	79499153	79500153	+	947.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 8 of 16)	MusHAL1|LINE|L1	68026.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93346078-2	chr1	93345592	93346592	+	947.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105867)	promoter-TSS (NR_105867)	0.0	NR_105867	102465544.0		NR_105867	ENSMUSG00000106302	Mir6902	mmu-mir-6902	microRNA 6902	ncRNA	0.0	0.0	0.0	1.5	2.0	0.5
Merged-chr9-99376922-2	chr9	99376421	99377421	+	947.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-18391.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	5.0	7.5	5.0	0.0	3.5	4.5
Merged-chr12-86147462-3	chr12	86146960	86147960	+	947.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029601, intron 4 of 7)	L2b|LINE|L2	-21881.0	NR_046081	328136.0	Mm.312050	NR_046081	ENSMUSG00000097543	Gm805	-	predicted gene 805	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118544409-2	chr2	118543907	118544907	+	947.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_138603, exon 1 of 2)	non-coding (NR_138603, exon 1 of 2)	180.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	0.5	0.0	0.0	0.0	5.0	1.0
Merged-chr4-122898521-4	chr4	122898012	122899012	+	947.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12436.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-102023871-2	chr13	102023371	102024371	+	947.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-255654.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5117604-4	chr19	5117101	5118101	+	947.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045528, intron 1 of 15)	CpG	807.0	NR_045528	16594.0	Mm.271648	NM_008451	ENSMUSG00000024862	Klc2	8030455F02Rik|AW212649|KLC 2|KLC-2	kinesin light chain 2	protein-coding	0.0	0.0	3.0	0.0	4.5	3.0
Merged-chr6-125147634-2	chr6	125147134	125148134	+	947.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039669, intron 1 of 9)	intron (NM_001039669, intron 1 of 9)	2410.0	NM_001302779	320678.0	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	8.0	79.0	40.5	22.0	76.5	45.0
Merged-chr11-69584680-2	chr11	69584180	69585180	+	947.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127233, intron 1 of 10)	intron (NM_001127233, intron 1 of 10)	4321.0	NM_001127233	22059.0	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-105048879-3	chr13	105048401	105049401	+	947.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029879, intron 2 of 5)	intron (NM_029879, intron 2 of 5)	6029.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92669725-4	chr16	92669228	92670228	+	947.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 4 of 6)	RMER17C|LTR|ERVK	27601.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101472333-2	chr11	101471833	101472833	+	947.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009708)	TTS (NM_009708)	4158.0	NM_009708	11858.0	Mm.378883	NM_009708	ENSMUSG00000001313	Rnd2	Arhn|Rohn|rho7	Rho family GTPase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-66861902-3	chr4	66861408	66862408	+	947.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34357.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	6.0	2.5	11.5	5.5	4.5	8.5
Merged-chr12-116485757-4	chr12	116485251	116486251	+	947.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011215)	promoter-TSS (NM_011215)	31.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	0.0	0.0	4.5	0.0	0.0	2.5
Merged-chr10-117829150-2	chr10	117828650	117829650	+	947.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	16824.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78271715-3	chr15	78271217	78272217	+	947.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13132.0	NR_106137	102465776.0		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	1.0	14.0	4.5	0.0	1.0	1.5
Merged-chr7-49178336-3	chr7	49177853	49178853	+	947.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	-16195.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38521628-2	chr16	38521128	38522128	+	947.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024273, intron 1 of 6)	PB1D7|SINE|Alu	1035.0	NM_024273	76916.0	Mm.132231	NM_024273	ENSMUSG00000002846	Timmdc1	2810021C21Rik|4930455C21Rik|AV135763	translocase of inner mitochondrial membrane domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20982187-4	chr11	20981725	20982725	+	947.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109099.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	4.0	2.0	1.5	4.0	2.0	1.5
Merged-chr3-8992920-2	chr3	8992420	8993420	+	947.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	MLT1F1|LTR|ERVL-MaLR	11284.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	17.5	33.0	31.5	23.5	32.5	46.0
Merged-chr10-117879369-6	chr10	117878851	117879851	+	947.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33377.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92000987-4	chr5	92000494	92001494	+	947.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13521.0	NM_001177577	381651.0	Mm.332494	NM_001177577	ENSMUSG00000096035	Odaph	Gm1045|Gm1045-a|Gm1045-b	odontogenesis associated phosphoprotein	protein-coding	0.0	0.0	2.5	0.0	0.0	0.0
Merged-chr3-121262960-3	chr3	121262370	121263370	+	947.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355678, exon 1 of 8)	5' UTR (NM_001355678, exon 1 of 8)	289.0	NM_001355678	99887.0	Mm.26088	NM_178936	ENSMUSG00000028132	Tmem56	4930577M16Rik|AU018104|AW109744|C730036B01Rik	transmembrane protein 56	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71596095-4	chr8	71595584	71596584	+	947.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025396, exon 5 of 5)	exon (NM_025396, exon 5 of 5)	-1562.0	NM_001166213	100037278.0	Mm.482159	NM_001166213	ENSMUSG00000043243	Fam129c	Bcnp1	family with sequence similarity 129, member C	protein-coding	1.5	12.5	8.5	2.0	15.5	14.5
Merged-chr2-68907840-4	chr2	68907359	68908359	+	947.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	L1MB3|LINE|L1	46418.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142373876-3	chr7	142373379	142374379	+	947.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347541)	promoter-TSS (NM_001347541)	-133.0	NM_001347541	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	9.0	11.0	20.0	0.5	4.0	4.5
Merged-chr8-11466283-3	chr8	11465785	11466785	+	947.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-11644.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-150840309-4	chr5	150839793	150840793	+	947.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112314.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101051457-4	chr7	101050941	101051941	+	947.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39388.0	NM_001302346	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17281727-4	chr6	17281193	17282193	+	947.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016900, intron 1 of 2)	intron (NM_016900, intron 1 of 2)	508.0	NM_016900	12390.0	Mm.396075	NM_016900	ENSMUSG00000000058	Cav2	AI447843	caveolin 2	protein-coding	0.0	0.0	1.0	3.5	0.0	4.0
Merged-chr3-95609413-4	chr3	95608855	95609855	+	947.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146133, intron 3 of 4)	intron (NM_146133, intron 3 of 4)	-15625.0	NM_019561	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	0.5	23.0	14.0	0.5	23.5	14.0
Merged-chr18-84849119-4	chr18	84848618	84849618	+	947.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2220.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96620076-5	chr10	96619567	96620567	+	947.405701	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007569, exon 2 of 2)	3' UTR (NM_007569, exon 2 of 2)	3066.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149820730-3	chr4	149820238	149821238	+	947.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46471.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0.0	0.0	0.0	0.0	0.0	3.0
Merged-chr12-100053805-4	chr12	100053311	100054311	+	947.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	ORR1F|LTR|ERVL-MaLR	-58520.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21160873-4	chr13	21160363	21161363	+	947.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17808.0	NM_146534	258527.0	Mm.271440	NM_146534	ENSMUSG00000045474	Olfr1368	MOR256-15	olfactory receptor 1368	protein-coding	4.0	6.0	0.5	2.0	0.0	0.5
Merged-chr16-57558404-4	chr16	57557879	57558879	+	947.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	9137.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	19.5	52.0	40.0	28.0	53.5	42.0
Merged-chr9-57561940-4	chr9	57561441	57562441	+	947.3583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022813, intron 1 of 8)	intron (NM_022813, intron 1 of 8)	997.0	NM_022813	24044.0	Mm.286069	NM_022813	ENSMUSG00000040188	Scamp2	AI875466|Sc2	secretory carrier membrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76411015-2	chr11	76410515	76411515	+	947.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_111896, intron 2 of 3)	intron (NR_111896, intron 2 of 3)	3872.0	NM_019818	56322.0	Mm.18803	NM_019818	ENSMUSG00000020843	Timm22	Tim22	translocase of inner mitochondrial membrane 22	protein-coding	3.0	1.5	0.0	2.0	2.0	0.5
Merged-chr5-122778998-4	chr5	122778520	122779520	+	947.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199676, intron 1 of 16)	CpG	390.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150473036-4	chr4	150472560	150473560	+	947.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 6 of 22)	intron (NM_001085492, intron 6 of 22)	179114.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36988615-3	chr1	36988109	36989109	+	947.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-49082.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-91234951-3	chr10	91234442	91235442	+	947.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14323.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-48853896-4	chr16	48853386	48854386	+	947.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	11334.0	NM_020509	57262.0	Mm.441868	NM_020509	ENSMUSG00000061100	Retnla	1810019L16Rik|Fizz-1|Fizz1|HIMF|RELM-alpha|RELMa|RELMalpha|Xcp2	resistin like alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128715688-7	chr2	128715178	128716178	+	947.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	16763.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	8.5	30.0	30.5	13.0	8.0	22.5
Merged-chr6-110041629-3	chr6	110041137	110042137	+	947.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-603875.0	NM_001346640	108073.0	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	3.0	2.5	6.5	1.0	2.5	6.0
Merged-chr2-148572935-4	chr2	148572442	148573442	+	947.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99673.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19281876-3	chr7	19281373	19282373	+	947.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013648)	promoter-TSS (NM_013648)	-751.0	NM_013648	20167.0	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-53098337-3	chr3	53097832	53098832	+	947.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175386, intron 2 of 3)	intron (NM_175386, intron 2 of 3)	56785.0	NM_175386	108927.0	Mm.118617	NM_175386	ENSMUSG00000048332	Lhfp	2810489O06Rik|AI194968|Lhfpl6	lipoma HMGIC fusion partner	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127398517-3	chr3	127398016	127399016	+	947.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327939, intron 1 of 45)	intron (NM_001327939, intron 1 of 45)	10542.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	9.0	33.5	14.5	2.0	1.0	0.5
Merged-chr7-16005165-3	chr7	16004660	16005660	+	947.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5665.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86497450-4	chr6	86496955	86497955	+	947.326416	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-9228.0	NR_040292	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-56121844-4	chr4	56121296	56122296	+	947.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-589321.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-60173311-4	chr1	60172811	60173811	+	947.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7288.0	NM_173444	269198.0	Mm.205224	NM_173444	ENSMUSG00000073664	Nbeal1	2310076G13Rik|A530050O19Rik|A530083I02Rik|AI662228|ALS2CR17	neurobeachin like 1	protein-coding	3.0	6.0	5.5	2.5	0.0	3.5
Merged-chr11-77196967-4	chr11	77196473	77197473	+	947.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-8005.0	NM_176965	319634.0	Mm.108786	NM_176965	ENSMUSG00000050944	Efcab5	4930563A03Rik	EF-hand calcium binding domain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-42397431-4	chr6	42396924	42397924	+	947.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2814.0	NM_001001452	387514.0	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134727292-4	chr5	134726765	134727765	+	947.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007925, intron 10 of 36)	intron (NM_007925, intron 10 of 36)	20058.0	NM_007925	13717.0	Mm.275320	NM_007925	ENSMUSG00000029675	Eln	AI385707|AI480567|E030024M20Rik	elastin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52468548-4	chr3	52468021	52469021	+	947.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-48443.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31472989-4	chr15	31472468	31473468	+	947.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172606, intron 20 of 25)	PB1D7|SINE|Alu	-19279.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121947137-2	chr8	121946507	121947507	+	947.291626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2095.0	NM_007608	12352.0	Mm.116761	NM_007608	ENSMUSG00000025317	Car5a	CAV|Ca5a|Car5	carbonic anhydrase 5a, mitochondrial	protein-coding	0.5	0.0	1.0	3.0	0.0	0.5
Merged-chr3-7613052-5	chr3	7612522	7613522	+	947.2800289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313890)	promoter-TSS (NM_001313890)	-129.0	NM_001313890	16196.0	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	1.0	7.5	1.5	4.5	1.0	0.0
Merged-chr16-25052573-3	chr16	25052059	25053059	+	947.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7080.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-116505514-4	chr10	116505016	116506016	+	947.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359253, intron 2 of 11)	intron (NM_001359253, intron 2 of 11)	22433.0	NM_001359253	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33744862-3	chr16	33744359	33745359	+	947.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 10 of 14)	intron (NM_175256, intron 10 of 14)	-49178.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-43757289-4	chr10	43756752	43757752	+	947.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040581, intron 1 of 3)	intron (NR_040581, intron 1 of 3)	11094.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-116951113-4	chr8	116950616	116951616	+	947.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177700, intron 1 of 3)	intron (NM_177700, intron 1 of 3)	7723.0	NM_177700	234776.0	Mm.259736	NM_177700	ENSMUSG00000047388	Atmin	Asciz|gpg6|mKIAA0431	ATM interactor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35055035-6	chr7	35054549	35055549	+	947.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009884, intron 1 of 1)	intron (NM_009884, intron 1 of 1)	1517.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81782416-2	chr13	81781916	81782916	+	947.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007684)	promoter-TSS (NM_007684)	-831.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133660212-2	chr4	133659695	133660695	+	947.25	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	12452.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	102.5	121.0	116.0	121.0	200.5	159.5
Merged-chr13-78163578-2	chr13	78163078	78164078	+	947.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163419, exon 10 of 10)	exon (NM_001163419, exon 10 of 10)	32871.0	NM_001347538	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97883682-4	chr11	97883183	97884183	+	947.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081435, intron 1 of 10)	CpG	471.0	NM_001081435	72973.0	Mm.245939	NM_001081435	ENSMUSG00000070336	Fbxo47	2900052P03Rik|Gm1562	F-box protein 47	protein-coding	9.0	37.0	24.5	14.0	34.5	32.0
Merged-chr4-125063006-2	chr4	125062506	125063506	+	947.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_175223, intron 3 of 5)	B1_Mur1|SINE|Alu	2651.0	NM_175223	75563.0	Mm.50304	NM_175223	ENSMUSG00000042707	Dnali1	1700023A09Rik|AW049135	dynein, axonemal, light intermediate polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111049274-4	chr9	111048757	111049757	+	947.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7987.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-34730175-4	chr4	34729675	34730675	+	947.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027041)	promoter-TSS (NM_027041)	31.0	NM_027041	69329.0	Mm.389548	NM_027041	ENSMUSG00000028294	Cfap206	1700003M02Rik|AU024269	cilia and flagella associated protein 206	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71195239-4	chr17	71194742	71195742	+	947.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	-9412.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	8.5	23.5	18.0	3.5	19.0	24.0
Merged-chr4-149398438-3	chr4	149397936	149398936	+	947.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022022, intron 2 of 26)	intron (NM_022022, intron 2 of 26)	28195.0	NM_022022	63958.0	Mm.415260	NM_022022	ENSMUSG00000028960	Ube4b	4930551I19Rik|4933406G05Rik|AU014668|D4Bwg0973e|UFD2|UFD2a|Ufd2p|mKIAA0684	ubiquitination factor E4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131760271-3	chr1	131759804	131760804	+	947.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177243, intron 12 of 20)	intron (NM_177243, intron 12 of 20)	16282.0	NM_177243	320718.0	Mm.482704	NM_177243	ENSMUSG00000042268	Slc26a9	E030002L01Rik	solute carrier family 26, member 9	protein-coding	4.0	0.0	0.0	0.0	2.0	0.0
Merged-chr3-145105120-3	chr3	145104621	145105621	+	947.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6015.0	NM_178697	229933.0	Mm.331420	NM_178697	ENSMUSG00000036960	Clca2	4732440A06|AI586120|Clca5	chloride channel accessory 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-90728836-4	chr6	90728358	90729358	+	947.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356440, intron 1 of 13)	intron (NM_001356440, intron 1 of 13)	-12329.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118599830-4	chr10	118599331	118600331	+	947.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-43306.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	82.0	107.5	120.5	48.0	145.0	112.5
Merged-chr1-181852631-4	chr1	181852116	181853116	+	947.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10215.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-86929153-4	chr10	86928675	86929675	+	947.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 25 of 68)	intron (NM_138673, intron 25 of 68)	78767.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-33765738-4	chr1	33765225	33766225	+	947.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359275, intron 14 of 15)	intron (NM_001359275, intron 14 of 15)	-7975.0	NM_145392	213539.0	Mm.247037	NM_145392	ENSMUSG00000042215	Bag2	2610042A13Rik|BC016230	BCL2-associated athanogene 2	protein-coding	0.0	3.0	1.5	2.0	11.0	0.5
Merged-chr5-118636972-4	chr5	118636493	118637493	+	947.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	76274.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	2.5	0.0	5.0	3.0	0.5	6.5
Merged-chr16-19969639-4	chr16	19969154	19970154	+	947.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183390, intron 1 of 6)	intron (NM_183390, intron 1 of 6)	13395.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47634939-4	chr9	47634461	47635461	+	947.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	104609.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	108.5	189.0	124.0	47.5	65.5	90.0
Merged-chr10-81303931-3	chr10	81303453	81304453	+	947.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	10990.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82866672-4	chr11	82866166	82867166	+	947.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164569, intron 1 of 7)	intron (NM_001164569, intron 1 of 7)	4078.0	NM_001164570	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75513375-4	chr10	75512879	75513879	+	947.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347201, intron 1 of 5)	intron (NM_001347201, intron 1 of 5)	4002.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119339472-3	chr8	119338954	119339954	+	947.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5084.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113556699-4	chr13	113556203	113557203	+	947.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-53859.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65418355-4	chr3	65417863	65418863	+	947.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25810.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr9-90240986-2	chr9	90240486	90241486	+	947.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	29783.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102511123-4	chr4	102510642	102511642	+	947.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-58918.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89361871-4	chr6	89361445	89362445	+	947.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008881, intron 1 of 31)	CpG	668.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134513830-6	chr1	134513300	134514300	+	947.14447	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19140.0	NM_145510	98710.0	Mm.198119	NM_145510	ENSMUSG00000042229	Rabif	AI842864|AW549708|E130318E12Rik|MSS4|RASGFR3	RAB interacting factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-42150097-4	chr13	42149610	42150610	+	947.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 3 of 8)	intron (NM_007772, intron 3 of 8)	98089.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-10396284-4	chr10	10395778	10396778	+	947.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 21 of 36)	intron (NM_001127353, intron 21 of 36)	76036.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97299526-3	chr6	97299017	97300017	+	947.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 20 of 23)	ORR1F|LTR|ERVL-MaLR	-46737.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	29.0	67.5	30.0	3.5	15.5	24.5
Merged-chr1-71103692-3	chr1	71103205	71104205	+	947.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007525)	promoter-TSS (NM_007525)	-733.0	NM_007525	12021.0	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	-	BRCA1 associated RING domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99539454-4	chr7	99538917	99539917	+	947.107178	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178220, intron 1 of 14)	intron (NM_178220, intron 1 of 14)	3931.0	NM_177231	109689.0	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	6.0	2.5	7.0	5.5	9.0	6.5
Merged-chr1-183671446-4	chr1	183670938	183671938	+	947.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77539.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	5.0	5.5	7.5	4.0	4.5	3.5
Merged-chr4-142076046-4	chr4	142075476	142076476	+	947.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-8322.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-74494516-4	chr13	74493998	74494998	+	947.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146231)	promoter-TSS (NM_146231)	-548.0	NM_146231	235956.0		NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34682247-4	chr6	34681741	34682741	+	947.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 2 of 13)	intron (NM_001347100, intron 2 of 13)	-27203.0	NM_145575	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25609205-4	chr8	25608712	25609712	+	947.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001735, intron 1 of 9)	intron (NM_001001735, intron 1 of 9)	6928.0	NM_001308482	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139407273-6	chr5	139406761	139407761	+	947.0793460000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177000, intron 1 of 1)	intron (NM_177000, intron 1 of 1)	874.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116195458-4	chr11	116194993	116195993	+	947.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271898, intron 2 of 13)	intron (NM_001271898, intron 2 of 13)	-3362.0	NM_027107	69535.0	Mm.390347	NM_027107	ENSMUSG00000020778	Ten1	2310004N24Rik	TEN1 telomerase capping complex subunit	protein-coding	6.5	5.0	6.5	5.0	5.5	2.0
Merged-chr3-96767251-4	chr3	96766743	96767743	+	947.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026406, intron 3 of 8)	ORR1D1-int|LTR|ERVL-MaLR	39632.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91099072-4	chr1	91098575	91099575	+	947.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 10 of 22)	intron (NM_008515, intron 10 of 22)	45631.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	3.5	13.5	10.5	3.0	12.0	15.0
Merged-chr8-69193474-4	chr8	69192986	69193986	+	947.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15560.0	NM_001013379	234358.0	Mm.334577	NM_001013379	ENSMUSG00000059897	Zfp930	-	zinc finger protein 930	protein-coding	7.0	51.0	36.0	14.5	38.5	21.5
Merged-chr19-45961913-4	chr19	45961406	45962406	+	947.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198296, intron 8 of 25)	intron (NM_198296, intron 8 of 25)	-36231.0	NR_152221	100174921.0	Mm.487206	NR_152221		4930505N22Rik	-	RIKEN cDNA 4930505N22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137594801-4	chr4	137594295	137595295	+	947.0125119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355588, intron 1 of 26)	intron (NM_001355588, intron 1 of 26)	623.0	NM_130879	170707.0	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	44.5	63.0	67.5	3.5	18.5	19.5
Merged-chr5-66019310-2	chr5	66018810	66019810	+	947.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001127382, exon 8 of 8)	exon (NM_001127382, exon 8 of 8)	-15025.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-88606943-1	chr2	88606443	88607443	+	947.0	f1_balb.idr	Intergenic	L1_Mus2|LINE|L1	15137.0	NM_146772	258768.0	Mm.377683	NM_146772	ENSMUSG00000068808	Olfr1189	MOR237-2	olfactory receptor 1189	protein-coding	0.0	0.5	2.0	4.5	0.0	2.0
Merged-chr12-84173183-2	chr12	84172683	84173683	+	947.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163502, exon 2 of 13)	exon (NM_001163502, exon 2 of 13)	20832.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61091301-2	chr9	61090801	61091801	+	947.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14085.0	NR_105026	66785.0	Mm.158134	NR_105026	ENSMUSG00000111807	4933433G08Rik	-	RIKEN cDNA 4933433G08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24519025-2	chr16	24518525	24519525	+	947.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 3 of 12)	intron (NM_178665, intron 3 of 12)	-10289.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4304906-1	chr19	4304406	4305406	+	947.0	f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	1316.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	6.5	47.5	23.0	4.5	28.5	35.0
Merged-chr11-100699756-2	chr11	100699256	100700256	+	947.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030150, intron 7 of 12)	PB1D10|SINE|Alu	4515.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27067348-2	chr3	27066848	27067848	+	947.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC4a|LINE|L1	86506.0	NM_007900	13605.0	Mm.261453	NM_007900	ENSMUSG00000027699	Ect2	AI528536	ect2 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-138493914-4	chr3	138493421	138494421	+	947.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4539.0	NM_175224	75624.0	Mm.26833	NM_175224	ENSMUSG00000005813	Metap1	1700029C17Rik|AW047992|mKIAA0094	methionyl aminopeptidase 1	protein-coding	3.0	2.0	3.5	1.5	3.5	1.5
Merged-chr10-21845452-3	chr10	21844968	21845968	+	947.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1B|DNA|hAT-Tip100	-36716.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	1.0	3.5	4.0	0.0	4.0	0.5
Merged-chr2-166694741-4	chr2	166694231	166695231	+	947.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	ORR1B1|LTR|ERVL-MaLR	19101.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98775810-2	chr10	98775310	98776310	+	947.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138832.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76636821-2	chr15	76636271	76637271	+	947.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183091, intron 9 of 25)	intron (NM_183091, intron 9 of 25)	3158.0	NM_183091	72749.0	Mm.358749	NM_183091	ENSMUSG00000059323	Tonsl	2810439M11Rik|Nfkbil2	tonsoku-like, DNA repair protein	protein-coding	13.5	0.0	0.0	13.5	0.0	0.0
Merged-chr15-101244850-1	chr15	101244350	101245350	+	947.0	f1_balb.idr	Intergenic	Intergenic	-19664.0	NR_045328	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	26.0	72.5	37.0	24.0	45.5	53.5
Merged-chr4-137356233-2	chr4	137355733	137356733	+	947.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009861, intron 1 of 5)	PB1D9|SINE|Alu	1526.0	NM_009861	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	27.5	36.0	33.5	22.0	35.5	23.5
Merged-chr5-121839374-2	chr5	121838874	121839874	+	947.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2515.0	NM_008507	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167698640-2	chr2	167698140	167699140	+	947.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	7463.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81343566-2	chr7	81343066	81344066	+	947.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009092, intron 4 of 4)	intron (NM_009092, intron 4 of 4)	1668.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-149355333-1	chr6	149354833	149355833	+	947.0	f0_c57.idr	Intergenic	Intergenic	45919.0	NM_001289662	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27291601-4	chr3	27291096	27292096	+	947.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-25481.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-35348930-3	chr10	35348424	35349424	+	947.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	865524.0	NM_010237	14302.0	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-52278108-2	chr14	52277608	52278608	+	947.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172601, intron 2 of 7)	B1_Mus1|SINE|Alu	-1038.0	NM_023434	268741.0	Mm.246237	NM_023434	ENSMUSG00000016831	Tox4	5730589K01Rik|A630040M18|AA410149|LCP1	TOX high mobility group box family member 4	protein-coding	0.0	0.0	4.5	0.5	2.0	4.5
Merged-chr7-30563727-4	chr7	30563220	30564220	+	947.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025498)	promoter-TSS (NM_025498)	380.0	NM_170760	233073.0	Mm.34790	NM_170760	ENSMUSG00000078765	U2af1l4	AA407033|AF419339|AI451269|AW553050|U2af26	U2 small nuclear RNA auxiliary factor 1-like 4	protein-coding	6.0	10.5	9.0	3.0	21.0	5.5
Merged-chr6-128425641-2	chr6	128425141	128426141	+	947.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133927)	promoter-TSS (NM_133927)	-731.0	NM_133927	101142.0	Mm.31345	NM_133927	ENSMUSG00000001518	Itfg2	2700050P07Rik|AI646725	integrin alpha FG-GAP repeat containing 2	protein-coding	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr3-107863295-2	chr3	107862795	107863795	+	947.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13935.0	NM_133867	99662.0	Mm.108491	NM_133867	ENSMUSG00000040600	Eps8l3	AI504489|Eps8r3	EPS8-like 3	protein-coding	0.0	0.0	1.0	1.5	2.0	4.5
Merged-chr10-122890636-2	chr10	122890136	122891136	+	947.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 6 of 9)	intron (NM_001110218, intron 6 of 9)	95088.0	NR_029527	387251.0		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41258827-2	chr19	41258327	41259327	+	947.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133352, intron 1 of 14)	B3|SINE|B2	5177.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4193466-4	chr8	4192968	4193968	+	946.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346730, intron 10 of 19)	intron (NM_001346730, intron 10 of 19)	23844.0	NM_207203	73072.0	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30013275-4	chr16	30012773	30013773	+	946.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033631, intron 1 of 2)	intron (NR_033631, intron 1 of 2)	4606.0	NR_033631	100043102.0	Mm.30797	NR_033631	ENSMUSG00000097184	4632428C04Rik	Gm4231	RIKEN cDNA 4632428C04 gene	ncRNA	0.0	15.0	1.0	0.0	5.0	0.0
Merged-chr9-103345745-4	chr9	103345255	103346255	+	946.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_176979, exon 25 of 28)	exon (NM_176979, exon 25 of 28)	19224.0	NM_001134427	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119980067-4	chr4	119979496	119980496	+	946.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	(TG)n|Simple_repeat|Simple_repeat	165318.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	3.0	13.0	15.5	13.5	12.0	14.0
Merged-chr8-3330881-4	chr8	3330386	3331386	+	946.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22529.0	NM_001033378	319493.0	Mm.234565	NM_001033378	ENSMUSG00000074497	A430078G23Rik	-	RIKEN cDNA A430078G23 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45163927-3	chr7	45163422	45164422	+	946.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182993)	promoter-TSS (NM_182993)	1.0	NM_182993	72961.0	Mm.255631	NM_182993	ENSMUSG00000070570	Slc17a7	2900052E22Rik|AI851913|Vglut1	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-6417871-3	chr10	6417364	6418364	+	946.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB7_1-LTR_MM|LTR|ERVK	-340729.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120231889-4	chr10	120231381	120232381	+	946.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025431, exon 3 of 3)	3' UTR (NM_025431, exon 3 of 3)	4821.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59653555-4	chr9	59653048	59654048	+	946.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2820.0	NM_001253883	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132334959-4	chr4	132334460	132335460	+	946.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133878, intron 6 of 9)	intron (NM_133878, intron 6 of 9)	-5422.0	NM_027925	71787.0	Mm.239183	NM_027925	ENSMUSG00000028898	Trnau1ap	1110007F05Rik|AA387999|Secp43|Trspap1|WI1-2643G14.2	tRNA selenocysteine 1 associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141404980-4	chr4	141404478	141405478	+	946.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019701, intron 18 of 19)	intron (NM_019701, intron 18 of 19)	-6272.0	NM_024412	12733.0	Mm.167900	NM_024412	ENSMUSG00000033770	Clcnka	C75963|CLC-K1|Clcnk1	chloride channel, voltage-sensitive Ka	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123940247-4	chr9	123939745	123940745	+	946.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28447.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84778202-4	chr10	84777736	84778736	+	946.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024918, intron 1 of 17)	intron (NM_001024918, intron 1 of 17)	22188.0	NM_001024918	71137.0	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27790199-4	chr17	27789682	27790682	+	946.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033279, intron 2 of 4)	intron (NM_001033279, intron 2 of 4)	30360.0	NM_001033279	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	51.5	59.0	53.5	22.5	66.0	43.5
Merged-chr13-34711637-4	chr13	34711146	34712146	+	946.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27996.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-127248762-4	chr1	127248284	127249284	+	946.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	43798.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40803998-4	chr9	40803487	40804487	+	946.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031165, intron 6 of 8)	intron (NM_031165, intron 6 of 8)	2714.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	25.5	50.5	38.5	9.0	23.0	13.0
Merged-chr8-18950890-5	chr8	18950361	18951361	+	946.909973	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286469)	promoter-TSS (NM_001286469)	10.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69124264-4	chr11	69123737	69124737	+	946.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_033041)	TTS (NM_033041)	-2140.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	24.0	85.0	61.5	21.0	124.0	52.5
Merged-chr2-20962016-3	chr2	20961516	20962516	+	946.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128084, intron 1 of 24)	intron (NM_001128084, intron 1 of 24)	5705.0	NM_001081364	71435.0	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	0.0	0.0	0.0	2.5	0.0	1.0
Merged-chr4-48124486-3	chr4	48123975	48124975	+	946.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026343)	promoter-TSS (NM_026343)	-444.0	NM_026343	67727.0	Mm.171334	NM_026343	ENSMUSG00000061455	Stx17	4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351	syntaxin 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46641280-3	chr17	46640788	46641788	+	946.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357130, intron 3 of 15)	intron (NM_001357130, intron 3 of 15)	4792.0	NM_001357130	74764.0	Mm.279599	NM_029091	ENSMUSG00000003546	Klc4	1200014P03Rik|AA408085|AW146303|Knsl8	kinesin light chain 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23193695-4	chr17	23193203	23194203	+	946.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009555)	promoter-TSS (NM_009555)	-451.0	NM_001357697	22700.0	Mm.437934	NM_009555	ENSMUSG00000002617	Zfp40	CTfin12|NTfin12|Zfp-40	zinc finger protein 40	protein-coding	26.5	18.5	14.0	1.0	36.0	15.5
Merged-chr10-88350036-4	chr10	88349545	88350545	+	946.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 1 of 6)	intron (NM_027878, intron 1 of 6)	7030.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-108099056-4	chr10	108098555	108099555	+	946.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63345.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-27376757-4	chr16	27376254	27377254	+	946.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6515.0	NM_198166	224065.0	Mm.326918	NM_198166	ENSMUSG00000056423	Uts2b	Gm538|U2B|Urp|Uts2d	urotensin 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33780719-4	chr17	33780214	33781214	+	946.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020581, intron 2 of 6)	intron (NM_020581, intron 2 of 6)	861.0	NM_020581	57875.0	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	8.5	17.5	14.5	16.0	11.0	13.0
Merged-chr19-29462061-2	chr19	29461561	29462561	+	946.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	B1_Mm|SINE|Alu	51142.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-108235539-3	chr11	108235042	108236042	+	946.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	108346.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	6.0	6.0	2.0	2.0	8.5	2.5
Merged-chr10-17589322-4	chr10	17588823	17589823	+	946.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-133905.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111108877-4	chr10	111108335	111109335	+	946.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55967.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-22494111-4	chr6	22493619	22494619	+	946.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138038.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27426547-3	chr2	27426078	27427078	+	946.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_133905, exon 1 of 30)	non-coding (NR_133905, exon 1 of 30)	1030.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69264373-2	chr3	69263878	69264878	+	946.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	41959.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	3.0	5.0	1.0	3.0	3.0	3.0
Merged-chr7-6359364-3	chr7	6358864	6359864	+	946.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3944.0	NM_001025163	330463.0	Mm.136456	NM_177888	ENSMUSG00000055150	Zfp78	A330079D15|KRAB12|Zfp77	zinc finger protein 78	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57893470-6	chr15	57893000	57894000	+	946.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR65|LTR|ERV1	-1082.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-56691492-3	chr6	56690986	56691986	+	946.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	13213.0	NM_025520	66373.0	Mm.25642	NM_025520	ENSMUSG00000091625	Lsm5	2010208O10Rik|2310034K10Rik	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-105937306-4	chr12	105936801	105937801	+	946.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72962.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99342662-4	chr5	99342164	99343164	+	946.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	ORR1B1|LTR|ERVL-MaLR	-89737.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	13.0	36.0	21.5	20.5	38.0	9.5
Merged-chr11-80176914-3	chr11	80176416	80177416	+	946.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 9 of 10)	intron (NM_172133, intron 9 of 10)	-6956.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117360745-4	chr5	117360230	117361230	+	946.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021539, intron 1 of 8)	intron (NM_021539, intron 1 of 8)	3425.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	8.5	9.0	11.5	12.5	40.5	14.5
Merged-chr17-29398370-5	chr17	29397971	29398971	+	946.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37557.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	32.5	114.5	76.0	48.5	72.5	73.5
Merged-chr17-45766705-4	chr17	45766206	45767206	+	946.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	32200.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	2.5	0.0	3.0	0.0	1.0	3.0
Merged-chr7-122329786-4	chr7	122329289	122330289	+	946.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	40664.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46770481-4	chr18	46769984	46770984	+	946.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009681, intron 3 of 5)	intron (NM_009681, intron 3 of 5)	28608.0	NM_009681	11777.0	Mm.312536	NM_009681	ENSMUSG00000024480	Ap3s1	-	adaptor-related protein complex 3, sigma 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-151861170-6	chr4	151860659	151861659	+	946.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 1 of 23)	CpG	609.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46045912-4	chr19	46045432	46046432	+	946.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113408)	promoter-TSS (NM_001113408)	-621.0	NM_001113408	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	6.0	19.5	28.5	12.0	11.5	10.5
Merged-chr6-136930960-4	chr6	136930432	136931432	+	946.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301308, intron 2 of 4)	intron (NM_001301308, intron 2 of 4)	8595.0	NM_001301303	11857.0	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	15.0	38.0	13.5	9.5	19.5	20.5
Merged-chr1-80641454-4	chr1	80640957	80641957	+	946.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 2 of 55)	intron (NM_175291, intron 2 of 55)	23895.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73123794-4	chr12	73123294	73124294	+	946.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008612)	promoter-TSS (NM_008612)	77.0	NM_008612	17420.0	Mm.246750	NM_008612	ENSMUSG00000021103	Mnat1	E130115E11Rik|MAT1|P36	menage a trois 1	protein-coding	11.0	8.0	5.0	11.0	11.0	24.0
Merged-chr8-70489695-2	chr8	70489195	70490195	+	946.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2337.0	NM_182991	67937.0	Mm.23002	NM_182991	ENSMUSG00000035964	Tmem59l	5330410G16Rik	transmembrane protein 59-like	protein-coding	1.5	0.0	0.0	3.0	0.5	1.0
Merged-chr7-122010620-4	chr7	122010128	122011128	+	946.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028758, intron 3 of 16)	intron (NM_028758, intron 3 of 16)	10570.0	NM_028758	74105.0	Mm.29619	NM_028758	ENSMUSG00000030872	Gga2	1200007E24Rik|mKIAA1080	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87662572-4	chr11	87662076	87663076	+	946.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172448)	promoter-TSS (NM_172448)	-511.0	NM_172448	207742.0	Mm.440230	NM_172448	ENSMUSG00000034177	Rnf43	4732452J19Rik	ring finger protein 43	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr17-34635867-4	chr17	34635357	34636357	+	946.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6171.0	NM_030890	260297.0	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31|SynDIG4	proline-rich transmembrane protein 1	protein-coding	37.0	68.0	56.5	32.5	58.5	41.5
Merged-chr13-35665673-4	chr13	35665176	35666176	+	946.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009881, intron 1 of 9)	MIR3|SINE|MIR	5814.0	NM_009881	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-83649976-3	chr13	83649454	83650454	+	946.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347576, intron 6 of 10)	intron (NM_001347576, intron 6 of 10)	-71427.0	NR_152244	320203.0	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik|ECONEXIN|EyeLinc1|Visc-1	RIKEN cDNA C130071C03 gene	ncRNA	0.0	0.0	1.0	0.0	0.0	4.0
Merged-chr9-55541112-4	chr9	55540614	55541614	+	946.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027397)	promoter-TSS (NM_027397)	-35.0	NM_027397	104360.0	Mm.273996	NM_027397	ENSMUSG00000032318	Isl2	3110001N10Rik	insulin related protein 2 (islet 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-108348666-4	chr4	108348164	108349164	+	946.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	20512.0	NM_027250	69893.0	Mm.28354	NM_027250	ENSMUSG00000048351	Coa7	2010305A19Rik|AI451324|D4Ertd796e|Selrc1	cytochrome c oxidase assembly factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150075448-2	chr4	150074948	150075948	+	946.7000119999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6994.0	NR_029751	723848.0		NR_029751	ENSMUSG00000065493	Mir34a	Mirn34a|mir-34a|mmu-mir-34a	microRNA 34a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63589471-4	chr9	63588983	63589983	+	946.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030068, intron 3 of 21)	RMER16_Mm|LTR|ERVK	13010.0	NM_030068	78250.0	Mm.444612	NM_030068	ENSMUSG00000037801	Iqch	4921504K03Rik	IQ motif containing H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6062138-4	chr19	6061606	6062606	+	946.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028454)	TTS (NM_028454)	899.0	NM_013859	29805.0	Mm.2310	NM_013859	ENSMUSG00000075227	Znhit2	C11orf5|Fon|ORF6|Znhit2-ps	zinc finger, HIT domain containing 2	protein-coding	17.5	38.0	12.0	6.5	39.5	13.5
Merged-chr8-95427782-4	chr8	95427275	95428275	+	946.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008187, intron 1 of 5)	intron (NM_008187, intron 1 of 5)	7094.0	NM_008187	14894.0	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-125433285-3	chr1	125432811	125433811	+	946.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205386, intron 2 of 12)	intron (NM_001205386, intron 2 of 12)	2416.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-37140338-4	chr3	37139841	37140841	+	946.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA9|LINE|L1	-14387.0	NM_008366	16183.0	Mm.14190	NM_008366	ENSMUSG00000027720	Il2	Il-2	interleukin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41771937-3	chr19	41771441	41772441	+	946.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163495, intron 10 of 10)	intron (NM_001163495, intron 10 of 10)	24980.0	NR_040320	100502871.0	Mm.394485	NR_040320		Gm19424	-	predicted gene, 19424	ncRNA	79.0	127.5	94.5	11.0	15.0	9.0
Merged-chr7-28867822-4	chr7	28867305	28868305	+	946.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3419.0	NM_008496	16858.0	Mm.20973	NM_008496	ENSMUSG00000053522	Lgals7	Galectin-7|Pig1	lectin, galactose binding, soluble 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-138026487-4	chr3	138025975	138026975	+	946.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40913.0	NR_037975	329763.0	Mm.169710	NM_177860	ENSMUSG00000049349	Gm5105	D830013H12|EG329763	predicted gene 5105	ncRNA	1.0	3.0	1.0	0.0	10.5	0.5
Merged-chr14-13917862-3	chr14	13917358	13918358	+	946.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43455.0	NM_001285780	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr2-144268799-2	chr2	144268299	144269299	+	946.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_024225, intron 1 of 12)	intron (NM_024225, intron 1 of 12)	1773.0	NM_024225	69178.0	Mm.273379	NM_024225	ENSMUSG00000027423	Snx5	0910001N05Rik|1810032P22Rik|AU019504|D2Ertd52e	sorting nexin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39372940-4	chr6	39372419	39373419	+	946.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001361617, exon 2 of 17)	5' UTR (NM_001361617, exon 2 of 17)	4516.0	NR_155076	72144.0	Mm.482167	NM_028123	ENSMUSG00000029924	Slc37a3	2610507O21Rik|AU044904	solute carrier family 37 (glycerol-3-phosphate transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26572100-3	chr17	26571583	26572583	+	946.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	10571.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139283159-2	chr5	139282659	139283659	+	946.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	29662.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105253802-4	chr4	105253316	105254316	+	946.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96469.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	4.5	17.5	6.0	4.0	21.5	8.5
Merged-chr4-151860774-2	chr4	151860283	151861283	+	946.666626	f0_balb.idr|f0_c57.idr	intron (NM_001081557, intron 1 of 23)	intron (NM_001081557, intron 1 of 23)	985.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-8636817-2	chr16	8636317	8637317	+	946.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016881)	promoter-TSS (NM_016881)	884.0	NM_025708	66690.0	Mm.10068	NM_025708	ENSMUSG00000043140	Tmem186	2810440M13Rik|4432406C05Rik|AI648175|AW210586	transmembrane protein 186	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56701000-4	chr18	56700492	56701492	+	946.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6821.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-31018367-4	chr9	31017846	31018846	+	946.645874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-12298.0	NM_001115130	235132.0	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25961853-4	chr15	25961339	25962339	+	946.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277317, intron 1 of 6)	intron (NM_001277317, intron 1 of 6)	13612.0	NR_106071	102465698.0		NR_106071	ENSMUSG00000098719	Mir7212	Gm28027|mmu-mir-7212	microRNA 7212	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83530658-4	chr11	83530157	83531157	+	946.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013653)	promoter-TSS (NM_013653)	-139.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70865790-4	chr11	70865290	70866290	+	946.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291143, intron 2 of 18)	intron (NM_001291143, intron 2 of 18)	21029.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	23.5	3.5	6.0	13.0	8.5	7.5
Merged-chr15-98994099-4	chr15	98993606	98994606	+	946.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8141.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118431730-3	chr14	118431190	118432190	+	946.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65812.0	NR_045624	73306.0	Mm.362328	NR_045624	ENSMUSG00000099911	1700044C05Rik	-	RIKEN cDNA 1700044C05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-68898070-3	chr18	68897568	68898568	+	946.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038051, intron 3 of 6)	ORR1E|LTR|ERVL-MaLR	53460.0	NR_038051	78931.0	Mm.160155	NR_038051		4930546C10Rik	-	RIKEN cDNA 4930546C10 gene	ncRNA	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr18-79978287-2	chr18	79977753	79978753	+	946.583374	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-68642.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	3.5	16.5	5.0	55.0	34.5	32.0
Merged-chr7-80370812-4	chr7	80370336	80371336	+	946.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172903, exon 2 of 24)	5' UTR (NM_172903, exon 2 of 24)	539.0	NM_172903	140481.0	Mm.269245	NM_172903	ENSMUSG00000038886	Man2a2	1700052O22Rik|4931438M07Rik|AI480988|MX|Man IIx	mannosidase 2, alpha 2	protein-coding	9.0	41.0	18.0	3.0	23.0	19.0
Merged-chr11-37043952-4	chr11	37043463	37044463	+	946.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99722.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132096027-4	chr2	132095524	132096524	+	946.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355431, intron 2 of 6)	Lx8|LINE|L1	49084.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-115217017-4	chr7	115216550	115217550	+	946.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	265776.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	1.5	5.0	3.5	3.5	5.0	5.5
Merged-chr4-59438195-4	chr4	59437681	59438681	+	946.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 1 of 16)	CpG	452.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0.0	0.0	1.0	1.5	0.0	0.0
Merged-chr2-38536054-4	chr2	38535574	38536574	+	946.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159631, intron 1 of 9)	MIR3|SINE|MIR	24198.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38929289-7	chr18	38928620	38929620	+	946.5578	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033789, intron 3 of 4)	intron (NM_001033789, intron 3 of 4)	-10421.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	0.0	16.5	10.5	0.0	17.5	8.5
Merged-chr2-5966185-3	chr2	5965679	5966679	+	946.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081132, intron 3 of 21)	intron (NM_001081132, intron 3 of 21)	14710.0	NM_001081132	326622.0	Mm.31102	NM_001081132	ENSMUSG00000043241	Upf2	-	UPF2 regulator of nonsense transcripts homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3658149-3	chr12	3657687	3658687	+	946.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 8 of 17)	L2|LINE|L2	85203.0	NM_007886	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77686009-3	chr9	77685433	77686433	+	946.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49201.0	NM_172925	244923.0	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	5.5	1.5	0.5	16.0	11.5	7.5
Merged-chr2-9926978-6	chr2	9926444	9927444	+	946.542847	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027748, intron 4 of 6)	intron (NM_027748, intron 4 of 6)	20795.0	NR_152218	100126244.0	Mm.86343	NR_152218		Gm13262	-	predicted gene 13262	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128062654-4	chr7	128062154	128063154	+	946.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001082960)	promoter-TSS (NM_001082960)	14.0	NM_008401	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98589101-4	chr13	98588606	98589606	+	946.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	48304.0	NM_026685	68344.0	Mm.28766	NM_026685	ENSMUSG00000046082	Tmem174	0610009B10Rik|AA986094	transmembrane protein 174	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-97559091-4	chr13	97558576	97559576	+	946.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046157)	promoter-TSS (NR_046157)	-924.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-5309531-4	chr9	5309012	5310012	+	946.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007609, intron 1 of 8)	intron (NM_007609, intron 1 of 8)	663.0	NM_007609	12363.0	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-53547088-4	chr5	53546584	53547584	+	946.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8695.0	NM_001080928	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	12.0	0.0	3.0	9.0	11.0	4.5
Merged-chr2-120661953-4	chr2	120661448	120662448	+	946.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	52353.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34127876-5	chr10	34127335	34128335	+	946.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175449, exon 1 of 2)	exon (NM_175449, exon 1 of 2)	137.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-79533472-4	chr14	79532966	79533966	+	946.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	17792.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118796952-4	chr7	118796458	118797458	+	946.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027815, intron 18 of 30)	intron (NM_027815, intron 18 of 30)	56687.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	70.5	142.0	106.0	54.5	181.5	114.0
Merged-chr18-38428447-2	chr18	38427947	38428947	+	946.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	9540.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-112718199-4	chr6	112717687	112718687	+	946.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_080448, exon 22 of 22)	3' UTR (NM_080448, exon 22 of 22)	-21517.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74398260-4	chr1	74397751	74398751	+	946.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153088)	TTS (NM_153088)	3941.0	NR_029743	387219.0		NR_029743	ENSMUSG00000065468	Mir26b	Mirn26b|mir-26b|mmu-mir-26b	microRNA 26b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12540426-2	chr13	12539926	12540926	+	946.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-19976.0	NM_133643	171211.0	Mm.159671	NM_133643	ENSMUSG00000095105	Edaradd	1810032E07Rik|5830469M23Rik|A630043P06|cr	EDAR (ectodysplasin-A receptor)-associated death domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150587840-2	chr4	150587340	150588340	+	946.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	64334.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46841790-2	chr8	46841290	46842290	+	946.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 6 of 7)	intron (NR_152560, intron 6 of 7)	102045.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120983088-2	chr11	120982588	120983588	+	946.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027874, intron 2 of 9)	intron (NM_027874, intron 2 of 9)	8245.0	NM_139059	104318.0	Mm.216227	NM_027874	ENSMUSG00000025162	Csnk1d	1200006A05Rik|AA409348|D930010H05Rik	casein kinase 1, delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5871538-4	chr13	5871021	5872021	+	946.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10032.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88132149-4	chr17	88131661	88132661	+	946.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6649.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27652385-2	chr17	27651885	27652885	+	946.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-3206.0	NM_011861	23969.0	Mm.4926	NM_011861	ENSMUSG00000040276	Pacsin1	A830061D09Rik|H74|mKIAA1379|syndapin	protein kinase C and casein kinase substrate in neurons 1	protein-coding	5.0	1.0	0.0	2.0	0.0	0.0
Merged-chr17-32810868-4	chr17	32810366	32811366	+	946.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001267583)	promoter-TSS (NM_001267583)	-935.0	NM_183177	240063.0	Mm.30675	NM_183177	ENSMUSG00000055202	Zfp811	BC052046	zinc finger protein 811	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87359488-4	chr3	87358988	87359988	+	946.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009690, intron 1 of 5)	intron (NM_009690, intron 1 of 5)	1607.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	130.0	282.5	245.0	195.0	352.5	287.0
Merged-chr9-45241620-3	chr9	45241123	45242123	+	946.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 2 of 4)	intron (NM_001198971, intron 2 of 4)	25084.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87703386-2	chr16	87702886	87703886	+	946.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	4432.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	4.5	3.5	0.5	3.5	3.0	0.5
Merged-chr11-48801799-2	chr11	48801299	48802299	+	946.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028563)	promoter-TSS (NR_028563)	-234.0	NR_028563	100216534.0		NR_028563	ENSMUSG00000064725	Snord96a	U96	small nucleolar RNA, C/D box 96A	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44144474-4	chr19	44143974	44144974	+	946.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028607, intron 2 of 4)	intron (NM_028607, intron 2 of 4)	1972.0	NM_028607	73689.0	Mm.124685	NM_028607	ENSMUSG00000057506	Bloc1s2	2410089B13Rik|BLOS2|Bloc1s2a	biogenesis of lysosomal organelles complex-1, subunit 2	protein-coding	0.0	7.5	7.0	0.0	6.0	5.5
Merged-chr16-8676443-2	chr16	8675943	8676943	+	946.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-4290.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4681553-2	chr16	4681053	4682053	+	946.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR33|LTR|ERVK	-1833.0	NM_030205	78885.0	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17909596-3	chr17	17909098	17910098	+	946.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21774.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	26.0	83.5	40.0	27.0	79.0	39.5
Merged-chr15-101275277-2	chr15	101274777	101275777	+	946.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010444)	TTS (NM_010444)	8431.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167977734-2	chr2	167977234	167978234	+	946.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011201, exon 9 of 9)	3' UTR (NM_011201, exon 9 of 9)	32859.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-55961676-4	chr7	55961169	55962169	+	946.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015495)	promoter-TSS (NR_015495)	824.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	24.5	71.5	77.5	11.0	96.5	43.0
Merged-chr11-30084564-2	chr11	30084064	30085064	+	946.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58531.0	NM_146016	237711.0	Mm.445271	NM_146016	ENSMUSG00000044072	Eml6	2900083P10Rik|C230094A16Rik|EMAP-6	echinoderm microtubule associated protein like 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9671396-3	chr4	9670903	9671903	+	946.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2059.0	NM_001290367	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	6.5	9.5	8.0	0.0	16.5	5.0
Merged-chr9-65630214-2	chr9	65629714	65630714	+	946.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028030)	promoter-TSS (NM_028030)	-368.0	NM_028030	71973.0	Mm.29148	NM_028030	ENSMUSG00000032387	Rbpms2	2400008B06Rik|AI316523	RNA binding protein with multiple splicing 2	protein-coding	0.0	0.0	0.0	0.5	0.5	1.0
Merged-chr11-103325366-2	chr11	103324866	103325866	+	946.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19336.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117043789-2	chr11	117043289	117044289	+	946.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32994.0	NR_027059	76972.0	Mm.309167	NR_027059	ENSMUSG00000086859	Snhg20	2810008D09Rik	small nucleolar RNA host gene 20	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116076530-5	chr4	116076095	116077095	+	946.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153521, intron 1 of 9)	CpG	1326.0	NM_153521	230654.0	Mm.3655	NM_153521	ENSMUSG00000028703	Lrrc41	AA409966|AW555107|D630045E04Rik|D730026A16Rik|MUF1	leucine rich repeat containing 41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19300717-4	chr7	19300165	19301165	+	946.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9380.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25792354-4	chr17	25791857	25792857	+	946.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285982)	promoter-TSS (NM_001285982)	30.0	NM_001285982	214917.0	Mm.26783	NM_145410	ENSMUSG00000057411	Fam173a	-	family with sequence similarity 173, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86602347-4	chr11	86601827	86602827	+	946.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 9 of 11)	intron (NM_001356531, intron 9 of 11)	-18169.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23290449-4	chr16	23289965	23290965	+	946.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252506)	promoter-TSS (NM_001252506)	-5.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32761861-3	chr5	32761377	32762377	+	946.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177298, intron 3 of 7)	ORR1B1-int|LTR|ERVL-MaLR	-15535.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	9.0	3.5	1.0	2.0	3.5	0.0
Merged-chr13-31225667-3	chr13	31225164	31226164	+	946.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045957, intron 1 of 2)	L1MA5A|LINE|L1	15422.0	NR_045957	73924.0	Mm.417825	NR_045957	ENSMUSG00000087460	4930401O12Rik	-	RIKEN cDNA 4930401O12 gene	ncRNA	14.5	80.5	61.5	49.0	86.5	66.0
Merged-chr7-19803128-3	chr7	19802641	19803641	+	946.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6332.0	NM_023224	80794.0	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92312469-3	chr5	92311957	92312957	+	946.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2433.0	NM_172713	231452.0	Mm.86564	NM_172713	ENSMUSG00000029415	Sdad1	4931421J16|AA591032|AW538460	SDA1 domain containing 1	protein-coding	4.5	9.0	11.5	0.5	7.5	6.0
Merged-chr2-35732713-3	chr2	35732197	35733197	+	946.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35965.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-83594864-3	chr12	83594364	83595364	+	946.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183154, exon 2 of 12)	exon (NM_183154, exon 2 of 12)	2358.0	NM_001359167	217695.0	Mm.59257	NM_183154	ENSMUSG00000042628	Zfyve1	DFCP1|G630053K23|TAFF1|ZNFN2A1|mKIAA1589	zinc finger, FYVE domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45081275-3	chr7	45080748	45081748	+	946.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	10965.0	NM_026555	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	6.5	4.5	12.0	12.0	9.5	20.0
Merged-chr17-74457818-3	chr17	74457292	74458292	+	946.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 1 of 8)	intron (NM_001033367, intron 1 of 8)	1316.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107860201-4	chr13	107859724	107860724	+	946.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	29840.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-83234735-4	chr4	83234262	83235262	+	946.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 17 of 19)	intron (NM_027238, intron 17 of 19)	89427.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	42.0	76.5	48.5	8.0	67.0	31.0
Merged-chr1-132133661-4	chr1	132133128	132134128	+	946.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008795, intron 1 of 15)	L2|LINE|L2	6057.0	NM_008795	18557.0	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56387955-4	chr19	56387467	56388467	+	946.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198059, intron 3 of 40)	intron (NM_198059, intron 3 of 40)	2071.0	NM_198059	18175.0	Mm.386769	NM_008733	ENSMUSG00000049134	Nrap	-	nebulin-related anchoring protein	protein-coding	0.5	2.5	1.0	0.0	2.5	1.0
Merged-chr5-5184397-4	chr5	5183907	5184907	+	946.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 5 of 14)	L1M4a1|LINE|L1	81661.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	24.0	18.5	24.5	17.5	28.5	25.0
Merged-chr2-171633556-3	chr2	171633057	171634057	+	946.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	329242.0	NR_040509	75655.0	Mm.396203	NR_040509	ENSMUSG00000086823	1700028P15Rik	-	RIKEN cDNA 1700028P15 gene	ncRNA	5.5	0.0	1.5	1.0	0.5	2.5
Merged-chr17-24739522-2	chr17	24739007	24740007	+	946.416626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001346668, exon 2 of 4)	exon (NM_001346668, exon 2 of 4)	2914.0	NM_001346668	27361.0	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	18.0	30.0	33.0	10.0	22.0	17.5
Merged-chr11-3150004-5	chr11	3149441	3150441	+	946.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 14 of 32)	intron (NM_030207, intron 14 of 32)	25920.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100604723-4	chr15	100604170	100605170	+	946.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4686.0	NM_001304965	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	4.0	38.5	15.5	9.0	35.5	9.0
Merged-chr6-37601273-4	chr6	37600784	37601784	+	946.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71111.0	NM_145364	208665.0	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96732202-4	chr10	96731686	96732686	+	946.3916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	115185.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29268661-3	chr6	29268169	29269169	+	946.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3819.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144689455-3	chr3	144688960	144689960	+	946.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019464, exon 9 of 9)	3' UTR (NM_019464, exon 9 of 9)	30875.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106770443-3	chr11	106769980	106770980	+	946.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_148431, intron 7 of 7)	B3|SINE|B2	8986.0	NM_001353435	50776.0	Mm.859	NM_015810	ENSMUSG00000020718	Polg2	mtPolB|p55|polG-beta	polymerase (DNA directed), gamma 2, accessory subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-4601245-4	chr10	4600758	4601758	+	946.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10731.0	NM_001302532	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-8134490-2	chr9	8134021	8135021	+	946.375	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045524)	promoter-TSS (NM_001045524)	-227.0	NM_001045524	234915.0	Mm.101341	NM_001045524	ENSMUSG00000040729	Cep126	mKIAA1377	centrosomal protein 126	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-78163206-4	chr13	78162688	78163688	+	946.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163420, intron 8 of 8)	intron (NM_001163420, intron 8 of 8)	33261.0	NM_001347538	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-7994225-4	chr5	7993717	7994717	+	946.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTTG)n|Simple_repeat|Simple_repeat	33745.0	NM_054098	117167.0	Mm.31403	NM_054098	ENSMUSG00000012428	Steap4	1110021O17Rik|AI481214|Tiarp|Tnfaip9	STEAP family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84107205-4	chr17	84106671	84107671	+	946.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	28511.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20928269-4	chr14	20927762	20928762	+	946.357178	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1136.0	NM_009502	22330.0	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80088832-4	chr15	80088333	80089333	+	946.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2501.0	NM_009303	20972.0	Mm.230301	NM_009303	ENSMUSG00000022415	Syngr1	R75468|Syngr1b|p29	synaptogyrin 1	protein-coding	1.5	4.0	0.0	3.0	14.5	0.0
Merged-chr4-134917209-4	chr4	134916709	134917709	+	946.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-2293.0	NM_027935	71817.0	Mm.88349	NM_027935	ENSMUSG00000028822	Tmem50a	3200001F09Rik|CAM|Smp1	transmembrane protein 50A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27622573-4	chr3	27622076	27623076	+	946.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 3 of 26)	intron (NM_001356953, intron 3 of 26)	-37581.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-121427102-3	chr1	121426613	121427613	+	946.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3954.0	NM_001025156	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	13.0	24.0	14.0	10.5	25.5	17.0
Merged-chr5-92328173-3	chr5	92327667	92328667	+	946.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008599)	promoter-TSS (NM_008599)	-88.0	NM_008599	17329.0	Mm.766	NM_008599	ENSMUSG00000029417	Cxcl9	BB139920|CMK|Mig|MuMIG|Scyb9|crg-10	chemokine (C-X-C motif) ligand 9	protein-coding	4.5	1.5	5.0	19.5	3.5	4.0
Merged-chr16-90456834-4	chr16	90456289	90457289	+	946.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015755, intron 4 of 10)	intron (NM_015755, intron 4 of 10)	70392.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88765788-3	chr5	88765279	88766279	+	946.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007832, intron 1 of 6)	L1ME1|LINE|L1	766.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63668493-3	chr4	63668002	63669002	+	946.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34081.0	NR_151544	102632940.0	Mm.399154	NR_151544	ENSMUSG00000086817	Gm11482	-	predicted gene 11482	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-127859290-4	chr1	127858768	127859768	+	946.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9505.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	47.5	90.0	77.0	12.0	13.5	6.0
Merged-chr1-53852098-3	chr1	53851606	53852606	+	946.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 20 of 28)	IMPB_01|Satellite|Satellite	2682.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	82.5	164.0	126.5	103.0	216.0	147.0
Merged-chr6-135169433-1	chr6	135168933	135169933	+	946.3333130000001	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1218.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	1.0	7.5	4.0	2.5	16.5	6.5
Merged-chr17-74527381-4	chr17	74526869	74527869	+	946.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007566)	promoter-TSS (NM_007566)	-926.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	3.0	27.5	11.5	16.0	26.0	17.0
Merged-chr4-129062904-3	chr4	129062382	129063382	+	946.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 1 of 8)	intron (NM_029219, intron 1 of 8)	4611.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12925967-3	chr18	12925452	12926452	+	946.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207530, intron 4 of 27)	intron (NM_207530, intron 4 of 27)	15889.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102024159-2	chr7	102023659	102024659	+	946.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 6 of 8)	intron (NM_029211, intron 6 of 8)	-6004.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96496882-3	chr10	96496370	96497370	+	946.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120131.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-54642564-3	chr4	54642060	54643060	+	946.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-305385.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	0.0	0.0	1.0	1.5	4.0	3.0
Merged-chr17-28226224-4	chr17	28225736	28226736	+	946.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027185, exon 9 of 11)	exon (NM_027185, exon 9 of 11)	-6518.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21210617-4	chr5	21210132	21211132	+	946.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 5 of 26)	(CA)n|Simple_repeat|Simple_repeat	24365.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34895222-4	chr17	34894629	34895629	+	946.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198886, intron 1 of 1)	CpG	570.0	NM_198886	193736.0	Mm.161119	NM_198886	ENSMUSG00000049823	Zbtb12	BC020447|Bat-9|Bat9|G10|NG35	zinc finger and BTB domain containing 12	protein-coding	1.5	4.0	9.0	3.5	6.5	4.0
Merged-chr9-44258464-4	chr9	44257966	44258966	+	946.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178420, intron 6 of 9)	CT-rich|Low_complexity|Low_complexity	-7002.0	NM_133226	170761.0	Mm.29872	NM_133226	ENSMUSG00000032105	Pdzd3	NaPi-Cap2|Pdzk2	PDZ domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-126492354-3	chr10	126491837	126492837	+	946.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	218054.0	NR_105841	102465224.0		NR_105841	ENSMUSG00000098756	Mir378d	Gm27650|mmu-mir-378d	microRNA 378d	ncRNA	4.0	7.5	1.0	0.5	4.0	1.5
Merged-chr18-49576487-3	chr18	49575984	49576984	+	946.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53195.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-137969375-3	chr3	137968868	137969868	+	946.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 1 of 8)	intron (NM_011932, intron 1 of 8)	12181.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	0.5	4.5	8.0	0.5	4.5	9.0
Merged-chr4-136180576-3	chr4	136180076	136181076	+	946.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305399)	promoter-TSS (NM_001305399)	-206.0	NM_001305399	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	7.0	25.0	4.5	11.5	35.5	35.5
Merged-chr3-146445713-4	chr3	146445218	146446218	+	946.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-4749.0	NM_028836	74245.0	Mm.45396	NM_028836	ENSMUSG00000028189	Ctbs	2210401K11Rik|CTB	chitobiase, di-N-acetyl-	protein-coding	10.5	12.5	22.5	19.5	49.5	28.5
Merged-chr2-37772035-4	chr2	37771542	37772542	+	946.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4207.0	NM_001163566	241324.0	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125103333-4	chr6	125102812	125103812	+	946.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346610, intron 10 of 38)	intron (NM_001346610, intron 10 of 38)	6288.0	NR_106012	102466272.0		NR_106012	ENSMUSG00000098762	Mir7045	Gm27758|mmu-mir-7045	microRNA 7045	ncRNA	3.5	14.5	5.5	15.5	14.0	7.5
Merged-chr8-13624186-4	chr8	13623673	13624673	+	946.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 2 of 23)	intron (NM_009025, intron 2 of 23)	53414.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110449060-4	chr9	110448547	110449547	+	946.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360306, intron 3 of 9)	intron (NM_001360306, intron 3 of 9)	27647.0	NM_001360306	270201.0	Mm.41744	NM_177771	ENSMUSG00000054792	Klhl18	A930041K15|AW545966	kelch-like 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-106794252-4	chr6	106793744	106794744	+	946.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175357, exon 4 of 11)	exon (NM_175357, exon 4 of 11)	5843.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102414668-3	chr12	102414169	102415169	+	946.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 2 of 13)	intron (NM_011175, intron 2 of 13)	25144.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	5.5	23.0	9.0	29.0	49.0	40.0
Merged-chr3-30993268-4	chr3	30992765	30993765	+	946.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-2506.0	NM_008857	18759.0	Mm.291554	NM_008857	ENSMUSG00000037643	Prkci	2310021H13Rik|AI427505|PKClambda|Pkci|Pkcl|Prkcl|aPKClambda|mKIAA4165	protein kinase C, iota	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-83067671-4	chr13	83067175	83068175	+	946.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-369342.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63613774-4	chr9	63613276	63614276	+	946.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	11130.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52625377-4	chr3	52624878	52625878	+	946.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108414.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	5.0	0.5	2.5	6.0	4.0	5.5
Merged-chr7-45173146-2	chr7	45172672	45173672	+	946.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106022)	promoter-TSS (NR_106022)	-131.0	NR_106022	102465638.0		NR_106022	ENSMUSG00000106470	Mir7055	mmu-mir-7055	microRNA 7055	ncRNA	0.0	0.0	0.0	2.5	0.5	0.0
Merged-chr6-137387130-4	chr6	137386628	137387628	+	946.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 7 of 26)	intron (NM_011216, intron 7 of 26)	-23593.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-81591626-4	chr12	81591111	81592111	+	946.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347384, intron 1 of 7)	intron (NM_001347384, intron 1 of 7)	3397.0	NM_001347385	69792.0	Mm.279993	NM_027213	ENSMUSG00000002679	Med6	1500012F11Rik|AU019660|AV213303	mediator complex subunit 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-71735745-4	chr1	71735253	71736253	+	946.229126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82418.0	NR_040308	100042814.0	Mm.405775	NR_040308	ENSMUSG00000073652	Apol7d	Gm15456	apolipoprotein L 7d	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123930970-6	chr9	123930405	123931405	+	946.227783	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	37787.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144692228-4	chr3	144691704	144692704	+	946.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 9 of 10)	intron (NM_001282037, intron 9 of 10)	28131.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-34269320-3	chr4	34268827	34269827	+	946.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-219260.0	NM_026293	67652.0	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98535366-3	chr7	98534852	98535852	+	946.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41130.0	NM_001113379	434215.0	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	6.0	2.5	9.0	8.0	1.5	0.0
Merged-chr5-21056719-3	chr5	21056220	21057220	+	946.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356591)	promoter-TSS (NM_001356591)	-809.0	NM_011203	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90126454-4	chr9	90125952	90126952	+	946.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11632.0	NM_024431	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	9.5	12.0	23.5	3.5	18.5	7.0
Merged-chr3-96567298-4	chr3	96566798	96567798	+	946.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040409)	promoter-TSS (NR_040409)	-497.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	8.0	31.0	16.0	10.0	17.0	16.0
Merged-chr2-19580740-4	chr2	19580234	19581234	+	946.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-26824.0	NM_027600	70909.0	Mm.158488	NM_027600	ENSMUSG00000026734	4921504E06Rik	4921522E24Rik	RIKEN cDNA 4921504E06 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50114552-4	chr11	50114050	50115050	+	946.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 7 of 7)	B3|SINE|B2	-16810.0	NM_001290759	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-58658168-4	chr7	58657677	58658677	+	946.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009728)	promoter-TSS (NM_009728)	-25.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	2.0	2.5	0.0	0.0	0.0	0.5
Merged-chr3-96576381-4	chr3	96575880	96576880	+	946.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9579.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	117.0	362.5	225.0	191.0	262.5	241.5
Merged-chr11-77984419-6	chr11	77983868	77984868	+	946.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174852, intron 2 of 14)	CpG-2283	1552.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9001627-7	chr3	9001180	9002180	+	946.1904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	2524.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	17.0	20.5	32.0	22.0	23.0	27.0
Merged-chr12-91789955-4	chr12	91789455	91790455	+	946.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3519.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105526755-3	chr5	105526265	105527265	+	946.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 1 of 3)	intron (NM_133897, intron 1 of 3)	7294.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	6.0	9.0	7.0	1.0	2.5	5.0
Merged-chr8-61586704-3	chr8	61586152	61587152	+	946.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	B4|SINE|B4	4517.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.0	4.5	6.0	6.0	11.5	4.0
Merged-chr6-135008414-4	chr6	135007926	135008926	+	946.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3186.0	NM_026360	67755.0	Mm.166524	NM_026360	ENSMUSG00000030204	Ddx47	4930588A18Rik|C77285	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	protein-coding	29.5	61.5	38.5	28.5	55.5	54.0
Merged-chr13-83072179-3	chr13	83071678	83072678	+	946.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-373845.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	13.0	25.5	22.5	25.5	22.5	17.5
Merged-chr3-103851088-4	chr3	103850536	103851536	+	946.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142960, intron 3 of 3)	intron (NM_001142960, intron 3 of 3)	-8759.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	18.5	35.0	31.0	20.5	33.0	30.5
Merged-chr1-54586379-4	chr1	54585805	54586805	+	946.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28621.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	22.0	57.5	28.0	20.5	60.0	29.0
Merged-chr3-89216022-4	chr3	89215450	89216450	+	946.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_149740)	promoter-TSS (NR_149740)	-638.0	NR_149740	21827.0	Mm.2114	NM_013691	ENSMUSG00000028047	Thbs3	TSP3|Thbs-3	thrombospondin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34835824-4	chr1	34835315	34836315	+	946.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160236, intron 2 of 6)	intron (NM_001160236, intron 2 of 6)	7235.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127527772-4	chr3	127527294	127528294	+	946.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17295.0	NR_146435	110008574.0		NR_146435		LOC110008574	-	miR-302 host gene	ncRNA	24.0	35.5	57.5	1.5	14.0	15.5
Merged-chr11-58096311-4	chr11	58095782	58096782	+	946.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-7688.0	NM_026949	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	1.5	11.0	7.5	15.0	13.0	34.5
Merged-chr14-45036785-4	chr14	45036298	45037298	+	946.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	48687.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61323241-4	chr18	61322744	61323744	+	946.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133249, exon 2 of 12)	exon (NM_133249, exon 2 of 12)	74656.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	10.0	21.0	20.5	6.0	21.0	42.5
Merged-chr13-45105407-4	chr13	45104975	45105975	+	946.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103379.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	14.5	29.0	44.5	15.5	27.5	13.0
Merged-chr5-31488094-4	chr5	31487590	31488590	+	946.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026296, exon 2 of 2)	exon (NM_026296, exon 2 of 2)	2231.0	NM_026296	67656.0	Mm.23355	NM_026296	ENSMUSG00000029138	4930548H24Rik	AI427865	RIKEN cDNA 4930548H24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-29597296-3	chr16	29596739	29597739	+	946.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133752, intron 5 of 28)	intron (NM_133752, intron 5 of 28)	17905.0	NM_001199177	74143.0	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	7.5	0.5	18.0	5.5	12.5	18.5
Merged-chr16-49954022-3	chr16	49953531	49954531	+	946.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1799.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-73863613-3	chr18	73863112	73864112	+	946.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360973)	promoter-TSS (NM_001360973)	17.0	NM_001360973	71263.0	Mm.126220	NM_027741	ENSMUSG00000064036	Mro	4930507C04Rik|4933435E20Rik	maestro	protein-coding	3.0	1.5	1.0	0.0	0.0	0.0
Merged-chr5-64297271-4	chr5	64296764	64297764	+	946.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 11 of 18)	L1MB2|LINE|L1	66907.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	13.5	28.5	28.0	3.0	16.0	3.0
Merged-chr2-148491338-4	chr2	148490857	148491857	+	946.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47822.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102691328-4	chr12	102690877	102691877	+	946.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	-6357.0	NR_035457	100316812.0		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129297800-4	chr2	129297281	129298281	+	946.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181589)	promoter-TSS (NM_181589)	411.0	NR_040371	100503468.0	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	-	predicted gene 14023	ncRNA	137.0	326.0	227.0	68.5	191.0	156.5
Merged-chr16-23311877-3	chr16	23311383	23312383	+	946.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252506, intron 1 of 6)	L2|LINE|L2	21413.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146093561-3	chr3	146093131	146094131	+	946.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172864, intron 6 of 22)	intron (NM_172864, intron 6 of 22)	14405.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	1.0	0.0	0.0	2.0	3.0	0.0
Merged-chr1-191329184-4	chr1	191328688	191329688	+	946.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025864, intron 2 of 7)	intron (NM_025864, intron 2 of 7)	3223.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	14.5	14.0	10.0	3.5	16.0	2.5
Merged-chr3-52017929-4	chr3	52017436	52018436	+	946.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	87070.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75551152-4	chr7	75550659	75551659	+	946.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 2 of 36)	intron (NM_029332, intron 2 of 36)	95625.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157447653-4	chr2	157447163	157448163	+	946.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 2 of 13)	intron (NM_001025395, intron 2 of 13)	23370.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	7.0	5.5	7.0	6.0	4.0	15.0
Merged-chr17-72788271-4	chr17	72787803	72788803	+	946.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR50|LTR|ERVL	-48325.0	NM_027166	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	0.0	0.5	0.0	0.0	11.0	2.0
Merged-chr10-98708379-4	chr10	98707883	98708883	+	946.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-206259.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134350887-4	chr5	134350392	134351392	+	946.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24438.0	NR_039544	100628570.0		NR_039544	ENSMUSG00000093311	Mir3965	mmu-mir-3965|mu-mir-3965	microRNA 3965	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5566279-2	chr19	5565779	5566779	+	946.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1745.0	NM_001362046	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87294891-2	chr17	87294391	87295391	+	946.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 3 of 19)	(TG)n|Simple_repeat|Simple_repeat	12005.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141475949-2	chr7	141475449	141476449	+	946.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252588)	promoter-TSS (NM_001252588)	-431.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55486429-3	chr12	55485926	55486926	+	946.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	6221.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34577700-3	chr2	34577198	34578198	+	946.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290625, intron 8 of 11)	intron (NM_001290625, intron 8 of 11)	170847.0	NM_001290626	227743.0	Mm.270866	NM_177345	ENSMUSG00000038696	Mapkap1	AI591529|D230039K05Rik|Sin1	mitogen-activated protein kinase associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-23915600-4	chr1	23915115	23916115	+	946.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357395, intron 1 of 10)	RSINE1|SINE|B4	-5879.0	NM_001290683	98366.0	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	27.5	10.5	18.5	13.0	2.0	11.5
Merged-chr2-84538160-4	chr2	84537669	84538669	+	946.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31296.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24165865-2	chr5	24165365	24166365	+	946.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153092, intron 1 of 6)	intron (NM_153092, intron 1 of 6)	902.0	NM_001346582	231042.0	Mm.45513	NM_153092	ENSMUSG00000048439	Nupl2	AV116043|CG1|NLP-1|Nlp1	nucleoporin like 2	protein-coding	10.5	61.5	10.5	15.5	30.0	20.5
Merged-chr8-122419438-1	chr8	122418938	122419938	+	946.0	f1_c57bl6.idr	Intergenic	Intergenic	-2582.0	NM_145834	234836.0	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	4.0	2.5	0.0	0.0	0.0	1.0
Merged-chr3-41905824-4	chr3	41905336	41906336	+	946.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	163218.0	NM_027271	73852.0	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	1.0	10.5	19.5	9.5	18.0	11.0
Merged-chr11-98701924-2	chr11	98701424	98702424	+	946.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009971, intron 2 of 4)	intron (NM_009971, intron 2 of 4)	611.0	NM_009971	12985.0	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98021801-2	chr11	98021301	98022301	+	946.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145121, intron 1 of 13)	intron (NM_145121, intron 1 of 13)	826.0	NM_001282977	12295.0	Mm.41252	NM_031173	ENSMUSG00000020882	Cacnb1	CAB1|Cchb1|Cchlb1	calcium channel, voltage-dependent, beta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137290138-2	chr5	137289638	137290638	+	946.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001290010, exon 2 of 5)	exon (NM_001290010, exon 2 of 5)	1884.0	NM_001290010	11423.0	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-13551437-1	chr3	13550937	13551937	+	946.0	f0_balb.idr	intron (NM_001357034, intron 1 of 7)	intron (NM_001357034, intron 1 of 7)	78638.0	NM_001357036	76897.0	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62182167-2	chr10	62181667	62182667	+	946.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12060.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135972631-4	chr4	135972132	135973132	+	946.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011942)	promoter-TSS (NM_011942)	-38.0	NM_011942	26394.0	Mm.34302	NM_011942	ENSMUSG00000028670	Lypla2	LysoII	lysophospholipase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102433943-2	chr11	102433443	102434443	+	946.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008175, exon 5 of 13)	exon (NM_008175, exon 5 of 13)	3621.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17777201-4	chr12	17776691	17777691	+	946.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361645, intron 2 of 4)	intron (NM_001361645, intron 2 of 4)	86382.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	3.0	26.5	10.0	3.0	17.0	9.0
Merged-chr6-115852448-2	chr6	115851948	115852948	+	946.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010774, intron 1 of 7)	intron (NM_010774, intron 1 of 7)	893.0	NM_010774	17193.0	Mm.259308	NM_010774	ENSMUSG00000030322	Mbd4	Med1	methyl-CpG binding domain protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120046933-2	chr11	120046447	120047447	+	946.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001198785, exon 1 of 14)	exon (NM_001198785, exon 1 of 14)	198.0	NM_001198785	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	2.0	0.0	0.5	6.0	4.5	1.0
Merged-chr11-101581437-7	chr11	101580911	101581911	+	946.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144830)	promoter-TSS (NM_144830)	-831.0	NM_001359326	217203.0	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-104547460-4	chr14	104546969	104547969	+	946.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24803.0	NM_026047	72486.0	Mm.291811	NM_026047	ENSMUSG00000022120	Rnf219	2610206B13Rik|2810449K13Rik|AI451544	ring finger protein 219	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98262247-2	chr13	98261747	98262747	+	946.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271390)	promoter-TSS (NM_001271390)	745.0	NM_178918	105372.0	Mm.28221	NM_178918	ENSMUSG00000041747	Utp15	AW544865	UTP15 small subunit processome component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59240802-3	chr2	59240312	59241312	+	946.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	79962.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137770919-2	chr5	137770419	137771419	+	946.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7985.0	NM_001356989	69871.0	Mm.276058	NM_027242	ENSMUSG00000029725	Ppp1r35	2010007H12Rik|2010011D20Rik|AL024004	protein phosphatase 1, regulatory subunit 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-93163861-2	chr5	93163361	93164361	+	946.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001009818, intron 7 of 9)	intron (NM_001009818, intron 7 of 9)	42634.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	0.0	0.0	0.0	0.0	0.0	4.0
Merged-chr16-18423277-4	chr16	18422780	18423780	+	946.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007744, intron 1 of 4)	intron (NM_007744, intron 1 of 4)	-3137.0	NM_001353143	26462.0	Mm.390906	NM_013711	ENSMUSG00000075704	Txnrd2	AA118373|ESTM573010|TGR|Tr3|Trxr2|Trxrd2	thioredoxin reductase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156575835-2	chr1	156575335	156576335	+	946.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	17048.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	5.5	7.0	9.0	4.5	1.0	5.0
Merged-chr15-78878360-3	chr15	78877853	78878853	+	946.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145929, intron 1 of 16)	intron (NM_145929, intron 1 of 16)	1163.0	NM_145929	106039.0	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	32.5	111.5	58.0	32.5	94.0	63.0
Merged-chr4_GL456216_random-34969-1	chr4_GL456216_random	34469	35469	+	946.0	f0_c57.idr	intron (NM_001033326, intron 6 of 6)	CpG-10796	19088.0	NM_001033326	236082.0	Mm.305345	NM_001033326	ENSMUSG00000063897	Dhrsx	C80877|D4Ertd296e|Dhrsxy|Pscad	dehydrogenase/reductase (SDR family) X chromosome	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56709106-2	chr17	56708606	56709606	+	946.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252467, intron 10 of 13)	intron (NM_001252467, intron 10 of 13)	7815.0	NM_178926	106639.0	Mm.37290	NM_178926	ENSMUSG00000054723	Vmac	AI662250	vimentin-type intermediate filament associated coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28709204-4	chr17	28708698	28709698	+	946.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	16630.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106709436-2	chr11	106708936	106709936	+	946.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 2 of 14)	intron (NM_001305158, intron 2 of 14)	5845.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81400727-2	chr10	81400227	81401227	+	946.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008688, exon 10 of 10)	3' UTR (NM_008688, exon 10 of 10)	7663.0	NM_001099917	72273.0	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37319278-4	chr10	37318776	37319776	+	945.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-180350.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59732859-6	chr9	59732432	59733432	+	945.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17717.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60282252-4	chr10	60281789	60282789	+	945.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011179, intron 1 of 14)	intron (NM_011179, intron 1 of 14)	-2172.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60178349-4	chr2	60177859	60178859	+	945.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31577.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-66710745-4	chr17	66710255	66711255	+	945.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 23 of 32)	intron (NM_001357625, intron 23 of 32)	-3701.0	NR_151453	102639882.0	Mm.443262	NR_151453		1700016K05Rik	-	RIKEN cDNA 1700016K05 gene	ncRNA	8.5	18.0	8.5	1.5	6.5	6.5
Merged-chr14-40975308-4	chr14	40974760	40975760	+	945.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8364.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36145755-3	chr17	36145281	36146281	+	945.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033517, intron 1 of 3)	CpG	763.0	NR_033517	675325.0	Mm.75890	NR_033517	ENSMUSG00000038311	2410017I17Rik	-	RIKEN cDNA 2410017I17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-148609109-4	chr6	148608569	148609569	+	945.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045867, exon 3 of 3)	non-coding (NR_045867, exon 3 of 3)	5240.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-119883340-3	chr6	119882840	119883840	+	945.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19358.0	NM_001166382	19365.0	Mm.149	NM_011236	ENSMUSG00000030166	Rad52	Rad52yh	RAD52 homolog, DNA repair protein	protein-coding	5.0	10.5	9.5	8.0	0.0	8.5
Merged-chr1-75254447-4	chr1	75253943	75254943	+	945.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359281, intron 12 of 22)	intron (NM_001359281, intron 12 of 22)	9328.0	NM_001359281	19275.0	Mm.2902	NM_008985	ENSMUSG00000026204	Ptprn	IA-2|mIA-A|mKIAA4064	protein tyrosine phosphatase, receptor type, N	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73927156-4	chr17	73926590	73927590	+	945.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 6 of 35)	intron (NM_011723, intron 6 of 35)	23106.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132269046-2	chr4	132268546	132269546	+	945.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	1140.0	NR_002865	353373.0	Mm.424675	NR_002865		Rnu11	MBII-407|Mirn801|mir-801|mmu-mir-801	U11 small nuclear RNA	snRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80321138-4	chr10	80320690	80321690	+	945.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025521)	promoter-TSS (NM_025521)	-642.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103470701-4	chr11	103470201	103471201	+	945.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-58037.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	0.0	12.5	3.0	3.5	2.5	2.5
Merged-chr2-160021775-4	chr2	160021297	160022297	+	945.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040499, intron 1 of 3)	intron (NR_040499, intron 1 of 3)	5144.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123478575-8	chr9	123478084	123479084	+	945.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013860)	promoter-TSS (NM_013860)	-117.0	NM_013860	29806.0	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-71730381-3	chr1	71729888	71730888	+	945.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77053.0	NR_040308	100042814.0	Mm.405775	NR_040308	ENSMUSG00000073652	Apol7d	Gm15456	apolipoprotein L 7d	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114291625-4	chr7	114291179	114292179	+	945.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15563.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	19.0	75.0	47.0	39.0	65.0	40.0
Merged-chr6-134927284-5	chr6	134926826	134927826	+	945.841675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1766.0	NR_037956	381822.0	Mm.5935	NR_037955	ENSMUSG00000098318	Lockd	1190002F15Rik|AI120476|Droc	lncRNA downstream of Cdkn1b	ncRNA	44.5	84.0	52.0	38.5	126.0	45.0
Merged-chr16-91538687-4	chr16	91538186	91539186	+	945.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8408.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	64.0	211.5	198.5	34.5	61.5	66.5
Merged-chr17-62737589-2	chr17	62737089	62738089	+	945.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010109, intron 1 of 3)	(CCCTAA)n|Simple_repeat|Simple_repeat	143728.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-139467918-4	chr1	139467420	139468420	+	945.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009791, exon 8 of 28)	exon (NM_009791, exon 8 of 28)	13147.0	NM_009791	12316.0	Mm.168523	NM_009791	ENSMUSG00000033952	Aspm	Calmbp1|D330028K02Rik|MCPH5|Sha1	abnormal spindle microtubule assembly	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125503600-4	chr7	125503107	125504107	+	945.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12065.0	NM_026330	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	11.0	24.0	41.0	8.0	14.5	23.5
Merged-chr18-90602029-4	chr18	90601480	90602480	+	945.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22155.0	NM_001362365	108168395.0	Mm.391131	NM_001362365	ENSMUSG00000110277	Gm45871	-	predicted gene 45871	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-126478307-3	chr2	126477806	126478806	+	945.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 3 of 27)	intron (NM_001359975, intron 3 of 27)	13247.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30772963-7	chr2	30772463	30773463	+	945.8095089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28774.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27768557-5	chr2	27768066	27769066	+	945.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57983.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27699703-4	chr2	27699159	27700159	+	945.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-9633.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-47197484-4	chr11	47196984	47197984	+	945.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 2 of 7)	intron (NM_011891, intron 2 of 7)	181818.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75909554-9	chr15	75909123	75910123	+	945.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285430)	promoter-TSS (NM_001285430)	-67.0	NM_001285429	66656.0	Mm.258927	NM_023240	ENSMUSG00000055762	Eef1d	EF-1-delta	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9708710-3	chr18	9708207	9709207	+	945.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 1 of 9)	intron (NM_130449, intron 1 of 9)	1059.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161139690-4	chr1	161139178	161140178	+	945.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-3034.0	NM_028664	73844.0	Mm.38830	NM_028664	ENSMUSG00000044835	Ankrd45	4933409K03Rik	ankyrin repeat domain 45	protein-coding	7.5	3.0	10.5	19.5	1.0	1.5
Merged-chr2-148531758-4	chr2	148531171	148532171	+	945.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88136.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	50.0	34.5	33.5	46.0	53.0	40.0
Merged-chr5-140331892-4	chr5	140331390	140332390	+	945.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026510)	promoter-TSS (NM_026510)	8.0	NM_026510	68017.0	Mm.38894	NM_026510	ENSMUSG00000029557	Mrm2	2310037B18Rik|Ftsj2	mitochondrial rRNA methyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-116992749-4	chr8	116992215	116993215	+	945.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026572, intron 1 of 4)	intron (NM_026572, intron 1 of 4)	734.0	NM_026572	68133.0	Mm.258462	NM_026572	ENSMUSG00000034424	Gcsh	1100001L02Rik|5730591C18Rik	glycine cleavage system protein H (aminomethyl carrier)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59848219-4	chr11	59847711	59848711	+	945.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_134029, exon 1 of 5)	exon (NM_134029, exon 1 of 5)	138.0	NM_134029	103850.0	Mm.41761	NM_134029	ENSMUSG00000032615	Nt5m	2010013E09Rik|AI846937|dNT-2	5',3'-nucleotidase, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-77444287-2	chr8	77443787	77444787	+	945.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 3 of 22)	intron (NM_030113, intron 3 of 22)	-72769.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107819298-3	chr3	107818814	107819814	+	945.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-57916.0	NM_133867	99662.0	Mm.108491	NM_133867	ENSMUSG00000040600	Eps8l3	AI504489|Eps8r3	EPS8-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-62760404-4	chr5	62759909	62760909	+	945.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 1 of 32)	RSINE1|SINE|B4	5768.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122547534-4	chr5	122547000	122548000	+	945.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45275.0	NR_027838	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	4.0	5.5	18.5	17.5	59.0	14.0
Merged-chr12-112653373-4	chr12	112652860	112653860	+	945.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001165894)	TTS (NM_001165894)	5991.0	NR_105904	102465566.0		NR_105904	ENSMUSG00000098380	Mir6939	Gm27498|mmu-mir-6939	microRNA 6939	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31127347-2	chr14	31126847	31127847	+	945.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308091, intron 1 of 1)	intron (NM_001308091, intron 1 of 1)	1583.0	NM_001308466	66487.0	Mm.379116	NM_001308091	ENSMUSG00000058351	Smim4	2010107H07Rik|Gm41122	small integral membrane protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115533819-4	chr5	115533309	115534309	+	945.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	-25658.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	26.0	41.5	24.0	23.0	47.0	28.0
Merged-chr12-40470531-4	chr12	40470055	40471055	+	945.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	24502.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110815645-4	chr5	110815127	110816127	+	945.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-5546.0	NM_001347394	22241.0	Mm.271898	NM_009469	ENSMUSG00000029512	Ulk1	AU041434|Unc51.1|mKIAA0722	unc-51 like kinase 1	protein-coding	0.0	14.5	27.5	4.0	18.5	19.5
Merged-chr5-38082720-4	chr5	38082219	38083219	+	945.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359398, intron 1 of 9)	intron (NM_001359398, intron 1 of 9)	43489.0	NM_026959	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	9.0	19.5	11.5	3.5	13.5	12.5
Merged-chr16-33520059-4	chr16	33519557	33520557	+	945.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 1 of 11)	intron (NM_001083902, intron 1 of 11)	1462.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16044031-4	chr7	16043543	16044543	+	945.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27802.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115897270-4	chr5	115896793	115897793	+	945.69165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007708, intron 8 of 46)	intron (NM_007708, intron 8 of 46)	51637.0	NM_007708	12704.0	Mm.8321	NM_007708	ENSMUSG00000029516	Cit	C030025P15Rik|CRIK|CRIK-SK|Cit-k	citron	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180387033-4	chr1	180386484	180387484	+	945.6785890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-56435.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153225267-6	chr2	153224780	153225780	+	945.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198617, exon 1 of 1)	exon (NM_198617, exon 1 of 1)	161.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25751740-3	chr15	25751262	25752262	+	945.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 19 of 40)	intron (NM_019472, intron 19 of 40)	-1444.0	NM_001353142	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-9338321-3	chr11	9337807	9338807	+	945.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 27 of 61)	L5|LINE|RTE-X	146365.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	13.5	2.0	10.0	13.0	14.0	18.5
Merged-chr7-122464103-4	chr7	122463605	122464605	+	945.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 5 of 16)	Lx8b|LINE|L1	174980.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118807830-3	chr9	118807317	118808317	+	945.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 4 of 13)	intron (NM_001113514, intron 4 of 13)	96125.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	6.0	21.5	15.0	8.0	12.0	14.5
Merged-chr9-45441243-2	chr9	45440743	45441743	+	945.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081270, intron 1 of 32)	intron (NM_001081270, intron 1 of 32)	-10011.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5794991-6	chr19	5794485	5795485	+	945.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_002847)	TTS (NR_002847)	996.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28327722-3	chr17	28327265	28328265	+	945.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011287)	promoter-TSS (NM_011287)	-706.0	NM_011287	19896.0	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-18782332-3	chr13	18781829	18782829	+	945.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 4 of 28)	intron (NM_172120, intron 4 of 28)	65037.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184662325-2	chr1	184661825	184662825	+	945.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50172.0	NR_040627	74971.0	Mm.410816	NR_040627	ENSMUSG00000092578	4930488B22Rik	-	RIKEN cDNA 4930488B22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62058272-2	chr18	62057772	62058772	+	945.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105197.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134034443-2	chr6	134033914	134034914	+	945.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1286.0	NM_001303102	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	46.5	79.5	74.5	14.5	76.5	58.0
Merged-chr18-62048857-2	chr18	62048357	62049357	+	945.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	95782.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	0.0	1.0	9.5	3.0	0.0	1.5
Merged-chr14-74947837-4	chr14	74947344	74948344	+	945.662476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252132)	promoter-TSS (NM_001252132)	33.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98661473-4	chr15	98660967	98661967	+	945.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080981, intron 1 of 16)	intron (NM_001080981, intron 1 of 16)	1422.0	NM_001080981	74351.0	Mm.45725	NM_001080981	ENSMUSG00000003360	Ddx23	3110082M05Rik|4921506D17Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123611195-7	chr4	123610710	123611710	+	945.642883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 1 of 92)	B1_Mus2|SINE|Alu	-5210.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52858660-7	chr2	52858048	52859048	+	945.642883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	CpG	680.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81785828-3	chr13	81785379	81786379	+	945.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007684, intron 2 of 4)	intron (NM_007684, intron 2 of 4)	2632.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129311763-4	chr2	129311248	129312248	+	945.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1776.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	14.0	28.0	23.0	34.5	70.0	40.5
Merged-chr7-128738177-4	chr7	128737676	128738676	+	945.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145955, intron 1 of 15)	intron (NM_145955, intron 1 of 15)	2253.0	NM_145955	210711.0	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85380523-4	chr12	85379993	85380993	+	945.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-5776.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-115149147-2	chr7	115148669	115149669	+	945.625	f0_c57.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	197895.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	5.0	16.5	18.0	7.5	1.0	15.0
Merged-chr13-93718253-3	chr13	93717761	93718761	+	945.6222529999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028772, intron 13 of 15)	MTE2a|LTR|ERVL-MaLR	914.0	NR_045086	105364.0	Mm.443795	NR_045086	ENSMUSG00000087334	AW495222	-	expressed sequence AW495222	ncRNA	3.0	6.5	9.5	2.5	1.0	0.0
Merged-chr15-79224892-4	chr15	79224397	79225397	+	945.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4276.0	NM_008837	18693.0	Mm.259464	NM_008837	ENSMUSG00000068206	Pick1	Prkcabp	protein interacting with C kinase 1	protein-coding	0.0	2.0	0.5	4.5	0.0	2.0
Merged-chr12-25223754-4	chr12	25223248	25224248	+	945.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94574.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116028504-4	chr11	116027968	116028968	+	945.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1848.0	NM_001286006	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-43715502-4	chr11	43715019	43716019	+	945.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164231, intron 2 of 3)	intron (NM_001164231, intron 2 of 3)	32454.0	NM_133795	66827.0	Mm.271974	NM_133795	ENSMUSG00000041278	Ttc1	4833412C19Rik|C79328|TPR1	tetratricopeptide repeat domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-96510769-4	chr13	96510294	96511294	+	945.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_144624, intron 2 of 10)	intron (NR_144624, intron 2 of 10)	8393.0	NR_144623	27015.0	Mm.89926	NM_012048	ENSMUSG00000021668	Polk	DINP|Dinb1	polymerase (DNA directed), kappa	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-73574049-12	chr18	73573627	73574627	+	945.569458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039214, intron 1 of 1)	intron (NM_001039214, intron 1 of 1)	1422.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57638080-4	chr9	57637574	57638574	+	945.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 2 of 14)	intron (NM_001304761, intron 2 of 14)	7579.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9097182-4	chr4	9096676	9097676	+	945.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-172117.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-23878383-3	chr5	23877847	23878847	+	945.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	26114.0	NR_028536	100217436.0		NR_028536		Snord93	Gm22397|MBII-336	small nucleolar RNA, C/D box 93	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-100415469-3	chr9	100414957	100415957	+	945.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71016.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	3.0	1.5	3.0	0.0	1.0	1.5
Merged-chr1-131094079-4	chr1	131093569	131094569	+	945.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	3774.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	10.0	34.0	14.0	9.0	37.5	19.0
Merged-chr1-89891622-4	chr1	89891104	89892104	+	945.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178119, exon 18 of 18)	3' UTR (NM_178119, exon 18 of 18)	39572.0	NM_010262	14472.0	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-118425629-4	chr4	118425158	118426158	+	945.537476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2435.0	NM_001039175	54325.0	Mm.282096	NM_019422	ENSMUSG00000006390	Elovl1	AA407424|BB151133|Ssc1	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	protein-coding	0.5	23.5	13.5	3.5	12.5	25.0
Merged-chr3-130878995-4	chr3	130878496	130879496	+	945.537476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-148598.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93026435-3	chr16	93025940	93026940	+	945.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-200366.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60479957-4	chr13	60479466	60480466	+	945.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121981.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	17.0	5.5	12.5	0.0	1.0	0.5
Merged-chr1-36709299-6	chr1	36708834	36709834	+	945.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146107, intron 1 of 10)	LFSINE_Vert|SINE|tRNA	591.0	NM_146107	226977.0	Mm.28521	NM_146107	ENSMUSG00000037351	Actr1b	2310066K23Rik|AA960180|AI851923|Arp1b	ARP1 actin-related protein 1B, centractin beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163703148-4	chr2	163702658	163703658	+	945.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011106, intron 1 of 3)	intron (NM_011106, intron 1 of 3)	9121.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5747611-4	chr17	5747174	5748174	+	945.522217	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 8 of 8)	intron (NM_146073, intron 8 of 8)	-50983.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-66807769-4	chr10	66807262	66808262	+	945.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112622.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85483304-4	chr12	85482796	85483796	+	945.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9406.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31223695-2	chr6	31223195	31224195	+	945.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040260, intron 1 of 5)	intron (NR_040260, intron 1 of 5)	3344.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92443837-3	chr16	92443328	92444328	+	945.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	22341.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84387523-4	chr2	84387022	84388022	+	945.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018782, intron 2 of 15)	intron (NM_018782, intron 2 of 15)	37744.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	63.5	190.0	107.5	25.0	64.0	52.5
Merged-chr9-50591913-2	chr9	50591413	50592413	+	945.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11936.0	NM_025848	66925.0	Mm.10406	NM_025848	ENSMUSG00000000171	Sdhd	3110001M13Rik|AVLL5809|C78570|PRO19626	succinate dehydrogenase complex, subunit D, integral membrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8758352-2	chr3	8757852	8758852	+	945.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-91314.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-53668402-2	chr17	53667901	53668901	+	945.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151733, intron 16 of 16)	intron (NR_151733, intron 16 of 16)	20914.0	NM_028232	72415.0	Mm.153202	NM_028232	ENSMUSG00000023940	Sgo1	3300001M08Rik|C81037|Sgol1	shugoshin 1	protein-coding	17.0	2.5	4.5	11.0	2.5	5.5
Merged-chr6-87542811-4	chr6	87542308	87543308	+	945.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9549.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111234260-2	chr10	111233760	111234760	+	945.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003717, intron 3 of 22)	intron (NM_001003717, intron 3 of 22)	-64419.0	NM_027914	71769.0	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122597592-3	chr10	122597003	122598003	+	945.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27612.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	0.0	3.5	2.5	0.5	1.5	5.0
Merged-chr11-106496476-2	chr11	106495976	106496976	+	945.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-4515.0	NR_030703	100216537.0		NR_030703	ENSMUSG00000065126	Snord104	-	small nucleolar RNA, C/D box 104	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118701433-2	chr9	118700933	118701933	+	945.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 15 of 27)	intron (NM_133721, intron 15 of 27)	-10259.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	8.5	5.0	6.0	11.5	10.0	6.0
Merged-chr19-6239185-2	chr19	6238685	6239685	+	945.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-2483.0	NM_194348	329015.0	Mm.277384	NM_194348	ENSMUSG00000024773	Atg2a	1810013C15Rik|A830054M12|BC023754|mKIAA0404	autophagy related 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-82795508-4	chr10	82795006	82796006	+	945.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16617.0	NR_038042	70003.0	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	2.0	2.5	0.0	0.5	0.0	0.5
Merged-chr19-4010363-2	chr19	4009863	4010863	+	945.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133666, intron 3 of 9)	B1_Mus1|SINE|Alu	2392.0	NM_133666	17995.0	Mm.29842	NM_133666	ENSMUSG00000037916	Ndufv1	CI-51kD	NADH dehydrogenase (ubiquinone) flavoprotein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118173204-4	chr11	118172701	118173701	+	945.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 10 of 12)	intron (NM_001112700, intron 10 of 12)	39541.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120712940-2	chr11	120712440	120713440	+	945.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347612, intron 1 of 5)	intron (NM_001347612, intron 1 of 5)	827.0	NM_016665	20892.0	Mm.259716	NM_016665	ENSMUSG00000025144	Cenpx	Stra13	centromere protein X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-89870297-2	chr16	89869797	89870797	+	945.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 6 of 27)	B3|SINE|B2	-51945.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119443008-2	chr8	119442508	119443508	+	945.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_027950, exon 4 of 6)	exon (NM_027950, exon 4 of 6)	-3711.0	NM_054095	117148.0	Mm.356184	NM_054095	ENSMUSG00000031837	Necab2	Efcbp2	N-terminal EF-hand calcium binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44841320-2	chr7	44840820	44841820	+	945.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010215)	TTS (NM_010215)	5032.0	NM_010215	14204.0	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	0.0	0.0	2.0	0.0	0.0	2.0
Merged-chr19-3381465-2	chr19	3380965	3381965	+	945.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 16 of 18)	intron (NM_013495, intron 16 of 18)	-7392.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130221783-2	chr5	130221283	130222283	+	945.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027854)	promoter-TSS (NM_027854)	-552.0	NM_027854	71667.0	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80376373-4	chr10	80375868	80376868	+	945.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6731.0	NR_038088	100568459.0		NR_038088	ENSMUSG00000115783	Bc1	Gm24367	brain cytoplasmic RNA 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95823027-2	chr11	95822527	95823527	+	945.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1473.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113035088-4	chr13	113034606	113035606	+	945.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281487)	promoter-TSS (NM_001281487)	-273.0	NM_001281487	238896.0		NM_001281487	ENSMUSG00000078926	Cdc20b	EG238896|EG622422	cell division cycle 20B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128711028-2	chr4	128710528	128711528	+	945.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 5 of 14)	intron (NM_018774, intron 5 of 14)	-16543.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3622424-4	chr2	3621910	3622910	+	945.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-91048.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90654607-2	chr5	90654112	90655112	+	945.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14085.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	7.0	9.5	13.5	8.0	26.0	4.5
Merged-chr1-95316922-2	chr1	95316422	95317422	+	945.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026321, intron 1 of 2)	intron (NM_026321, intron 1 of 2)	3294.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-66076271-6	chr17	66075734	66076734	+	945.486084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025572, intron 1 of 12)	intron (NM_001025572, intron 1 of 12)	812.0	NM_001025572	106585.0	Mm.34706	NM_001025572	ENSMUSG00000034647	Ankrd12	2900001A12Rik|AI447928|ANCO-2|AV347965|GAC-1|mKIAA0874	ankyrin repeat domain 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-80045143-4	chr2	80044650	80045650	+	945.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	-6248.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	10.0	0.0	3.0	0.0	0.0	1.0
Merged-chr8-11015801-4	chr8	11015258	11016258	+	945.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046017, intron 1 of 4)	intron (NR_046017, intron 1 of 4)	-7328.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118149675-3	chr11	118149160	118150160	+	945.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20441.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-16103121-3	chr4	16102617	16103617	+	945.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60526.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45953739-3	chr17	45953242	45954242	+	945.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71421.0	NM_001110267	22339.0	Mm.282184	NM_009505	ENSMUSG00000023951	Vegfa	Vegf|Vpf	vascular endothelial growth factor A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-43862887-4	chr2	43862368	43863368	+	945.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 5 of 14)	intron (NM_001301831, intron 5 of 14)	114044.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-68096730-4	chr18	68096233	68097233	+	945.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 2 of 5)	intron (NM_172631, intron 2 of 5)	-131213.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.0	1.5	1.0	6.5	5.5	1.0
Merged-chr18-65381919-3	chr18	65381328	65382328	+	945.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037294, intron 1 of 12)	intron (NM_001037294, intron 1 of 12)	12060.0	NM_001037294	225638.0	Mm.296528	NM_001037294	ENSMUSG00000032845	Alpk2	Gm549|Hak	alpha-kinase 2	protein-coding	0.0	5.5	5.0	6.0	12.5	2.0
Merged-chr11-29787614-4	chr11	29787101	29788101	+	945.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 24 of 41)	intron (NM_146016, intron 24 of 41)	38067.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83652215-4	chr6	83651713	83652713	+	945.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016751, intron 4 of 6)	intron (NM_016751, intron 4 of 6)	3903.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	47.0	93.5	100.5	51.5	126.5	96.0
Merged-chr11-63827629-6	chr11	63827141	63828141	+	945.4027710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94643.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	0.5	7.0	1.0	0.0	1.0	0.5
Merged-chr2-153444385-5	chr2	153443905	153444905	+	945.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001986)	promoter-TSS (NM_001001986)	74.0	NM_001001986	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82475126-4	chr18	82474678	82475678	+	945.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010777)	promoter-TSS (NM_010777)	55.0	NM_010777	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-36348305-4	chr19	36347790	36348790	+	945.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30777.0	NM_029508	76073.0	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77743734-4	chr18	77743246	77744246	+	945.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-10276.0	NR_155289	105246501.0	Mm.403904	NR_155289		A330094K24Rik	-	RIKEN cDNA A330094K24 gene	ncRNA	0.0	2.5	2.0	0.0	5.5	0.0
Merged-chr3-95674961-4	chr3	95674457	95675457	+	945.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	12960.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	2.5	0.0	0.0	63.5	170.0	102.0
Merged-chr9-44233406-4	chr9	44232906	44233906	+	945.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 1 of 15)	intron (NM_007619, intron 1 of 15)	640.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	31.5	143.0	85.5	36.5	114.5	74.0
Merged-chr14-118181012-4	chr14	118180520	118181520	+	945.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43893.0	NM_021434	58245.0	Mm.275411	NM_021434	ENSMUSG00000022131	Gpr180	AB041545|E130016I23Rik|Itr	G protein-coupled receptor 180	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36514220-4	chr18	36513783	36514783	+	945.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010415, intron 2 of 5)	intron (NM_010415, intron 2 of 5)	1522.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	3.5	23.0	13.0	11.0	20.5	12.0
Merged-chr6-66929831-4	chr6	66929336	66930336	+	945.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177556, intron 2 of 3)	Lx8|LINE|L1	32945.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139734325-4	chr5	139733849	139734849	+	945.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174850, intron 1 of 16)	intron (NM_174850, intron 1 of 16)	1984.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	39.5	81.0	54.5	27.0	68.0	46.5
Merged-chr3-105850278-3	chr3	105849792	105850792	+	945.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20566.0	NM_027025	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	18.0	27.0	17.5	5.5	10.0	3.5
Merged-chr5-72161291-3	chr5	72160789	72161789	+	945.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178599, intron 3 of 4)	intron (NM_178599, intron 3 of 4)	6900.0	NM_001356611	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-47122240-3	chr7	47121737	47122737	+	945.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013643, intron 1 of 13)	intron (NM_013643, intron 1 of 13)	10361.0	NM_001163565	19259.0	Mm.4654	NM_013643	ENSMUSG00000030854	Ptpn5	Step	protein tyrosine phosphatase, non-receptor type 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139412593-3	chr7	139412083	139413083	+	945.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355162, intron 1 of 15)	intron (NM_001355162, intron 1 of 15)	12089.0	NM_001355162	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125337033-3	chr8	125336532	125337532	+	945.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	155801.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	19.0	15.0	17.0	10.0	7.0	1.5
Merged-chr5-35743444-3	chr5	35742947	35743947	+	945.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3460.0	NM_001359895	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	23.5	43.0	23.5	4.5	10.0	1.0
Merged-chr19-45581470-4	chr19	45580948	45581948	+	945.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013907, intron 6 of 8)	intron (NM_013907, intron 6 of 8)	20863.0	NM_172639	226162.0	Mm.21978	NM_172639	ENSMUSG00000041035	Dpcd	Ndac	deleted in primary ciliary dyskinesia	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49225802-4	chr13	49225287	49226287	+	945.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9761.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30622586-6	chr5	30622126	30623126	+	945.305542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010608, exon 2 of 2)	exon (NM_010608, exon 2 of 2)	-25310.0	NR_049199	100885838.0		NR_049199	ENSMUSG00000093710	Mir5625	Gm23930|mmu-mir-5625	microRNA 5625	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54655628-4	chr12	54655122	54656122	+	945.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134054, intron 1 of 1)	intron (NM_134054, intron 1 of 1)	950.0	NM_134054	104725.0	Mm.485026	NM_134054	ENSMUSG00000044408	Sptssa	1110002B05Rik|AA407909|AA409588|AU041967|Ssspta	serine palmitoyltransferase, small subunit A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121591507-4	chr8	121591016	121592016	+	945.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026160, intron 1 of 3)	intron (NM_026160, intron 1 of 3)	1048.0	NM_026160	67443.0	Mm.28357	NM_026160	ENSMUSG00000031812	Map1lc3b	1010001C15Rik|Atg8|LC3b|Map1lc3	microtubule-associated protein 1 light chain 3 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132305439-4	chr4	132304977	132305977	+	945.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2121.0	NM_001081651	242681.0	Mm.331927	NM_001081651	ENSMUSG00000089687	Rab42	9530096D07Rik|Rab42-ps	RAB42, member RAS oncogene family	protein-coding	0.0	3.0	1.5	26.5	72.0	28.0
Merged-chr8-90834201-4	chr8	90833783	90834783	+	945.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 1 of 39)	intron (NM_177224, intron 1 of 39)	5448.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	31.0	69.0	40.5	32.0	40.5	40.0
Merged-chr2-133467930-4	chr2	133467437	133468437	+	945.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84222.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145767186-3	chr6	145766707	145767707	+	945.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41176.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	14.0	6.5	14.5	1.5	7.5	10.5
Merged-chr5-92489234-3	chr5	92488763	92489763	+	945.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	16394.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-71383751-3	chr10	71383255	71384255	+	945.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347191, exon 6 of 6)	3' UTR (NM_001347191, exon 6 of 6)	35992.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134490197-3	chr4	134489695	134490695	+	945.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME4b|LINE|L1	-6566.0	NM_001285845	71904.0	Mm.142343	NM_027995	ENSMUSG00000037348	Paqr7	2310021M12Rik|AV001994|BB007237|Mpra|PGLP|mPR	progestin and adipoQ receptor family member VII	protein-coding	0.0	0.0	1.5	0.0	13.5	4.5
Merged-chr7-135598639-4	chr7	135598133	135599133	+	945.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316680, intron 1 of 20)	intron (NM_001316680, intron 1 of 20)	5152.0	NM_001316680	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97175927-4	chr6	97175446	97176446	+	945.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081111, exon 2 of 17)	exon (NM_001081111, exon 2 of 17)	3178.0	NM_001081111	232286.0	Mm.30893	NM_001081111	ENSMUSG00000030059	Tmf1	7030402D04Rik|Gm153|Tmf1`	TATA element modulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45236728-4	chr19	45236244	45237244	+	945.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1508.0	NM_010691	16814.0	Mm.116815	NM_010691	ENSMUSG00000025216	Lbx1	Lbx1h	ladybird homeobox 1	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr4-136505968-4	chr4	136505468	136506468	+	945.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024452, intron 1 of 4)	MTC|LTR|ERVL-MaLR	36207.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	16.5	30.5	16.0	17.0	32.5	30.0
Merged-chr1-92679014-4	chr1	92678529	92679529	+	945.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30188.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21035049-4	chr19	21034538	21035538	+	945.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69672.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	18.0	36.0	26.5	18.0	37.0	26.0
Merged-chr10-79681009-2	chr10	79680509	79681509	+	945.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1186.0	NM_001359818	216150.0	Mm.21981	NM_177613	ENSMUSG00000020307	Cdc34	AI327276|E2-CDC34|UBE2R1	cell division cycle 34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74020706-4	chr17	74020201	74021201	+	945.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053188, intron 4 of 4)	intron (NM_053188, intron 4 of 4)	27215.0	NM_053188	94224.0	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-116597170-4	chr12	116596679	116597679	+	945.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011215, intron 2 of 22)	MTE2a|LTR|ERVL-MaLR	111459.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	14.0	13.0	5.0	1.0	3.5	7.0
Merged-chr6-146127011-4	chr6	146126448	146127448	+	945.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 55 of 56)	intron (NM_019923, intron 55 of 56)	192826.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51339820-4	chr3	51339321	51340321	+	945.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 1 of 9)	CpG	823.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91489072-4	chr6	91488566	91489566	+	945.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028766)	TTS (NM_028766)	15315.0	NM_028766	74122.0	Mm.38801	NM_028766	ENSMUSG00000030095	Tmem43	1200015A22Rik|LUMA	transmembrane protein 43	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119805856-4	chr13	119805348	119806348	+	945.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-14726.0	NM_001302550	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25532268-3	chr15	25531770	25532770	+	945.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-90280.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53184904-3	chr11	53184412	53185412	+	945.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177059, intron 15 of 15)	intron (NM_177059, intron 15 of 15)	-64856.0	NR_046047	790909.0	Mm.404626	NR_046047	ENSMUSG00000087668	Gm11186	-	predicted gene 11186	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12520230-3	chr13	12519729	12520729	+	945.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_133643, exon 1 of 6)	5' UTR (NM_133643, exon 1 of 6)	221.0	NM_133643	171211.0	Mm.159671	NM_133643	ENSMUSG00000095105	Edaradd	1810032E07Rik|5830469M23Rik|A630043P06|cr	EDAR (ectodysplasin-A receptor)-associated death domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86967881-3	chr17	86967390	86968390	+	945.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	4779.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	2.5	11.0	6.5	0.0	1.0	0.5
Merged-chr2-113431059-4	chr2	113430579	113431579	+	945.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010230, intron 3 of 19)	intron (NM_010230, intron 3 of 19)	-9985.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.0	3.5	3.5	0.0	3.5	3.5
Merged-chr15-6625999-8	chr15	6625438	6626438	+	945.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155272, intron 3 of 6)	intron (NR_155272, intron 3 of 6)	28365.0	NR_155272	102632231.0	Mm.444780	NR_155272		LOC102632231	-	uncharacterized LOC102632231	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167844194-4	chr2	167843700	167844700	+	945.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88127.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-86961984-4	chr5	86961502	86962502	+	945.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35499.0	NM_152811	71773.0	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67049013-4	chr10	67048517	67049517	+	945.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	43942.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-70875408-4	chr6	70874920	70875920	+	945.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010121, intron 2 of 16)	intron (NM_010121, intron 2 of 16)	30905.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-61986176-4	chr15	61985676	61986676	+	945.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177353, intron 1 of 2)	CpG	835.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108662959-3	chr8	108662456	108663456	+	945.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51688.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr11-50245435-4	chr11	50244932	50245932	+	945.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6900.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191963501-3	chr1	191962995	191963995	+	945.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13875.0	NM_001177900	74023.0	Mm.274393	NM_023727	ENSMUSG00000049353	Rd3	3322402L07Rik|rd-3|rd3	retinal degeneration 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172247703-4	chr1	172247195	172248195	+	945.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013734, intron 7 of 22)	MER21C|LTR|ERVL	10729.0	NM_013734	27222.0	Mm.482392	NM_013734	ENSMUSG00000007107	Atp1a4	-	ATPase, Na+/K+ transporting, alpha 4 polypeptide	protein-coding	3.0	15.5	5.5	5.0	15.0	0.5
Merged-chr7-35150163-3	chr7	35149655	35150655	+	945.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30862.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	0.5	7.5	8.0	4.5	15.0	8.0
Merged-chr11-8589225-2	chr11	8588725	8589725	+	945.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 3 of 30)	intron (NM_001083587, intron 3 of 30)	75310.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47792111-2	chr17	47791611	47792611	+	945.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001161723, exon 9 of 9)	3' UTR (NM_001161723, exon 9 of 9)	6367.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr5-120648123-2	chr5	120647623	120648623	+	945.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359144)	promoter-TSS (NM_001359144)	-689.0	NM_001359144	19415.0	Mm.41209	NM_013832	ENSMUSG00000029602	Rasal1	MRASAL	RAS protein activator like 1 (GAP1 like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96284066-2	chr15	96283566	96284566	+	945.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3456.0	NM_175251	77044.0	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|BAF200|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-13978863-4	chr1	13978344	13979344	+	945.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-191915.0	NR_004447	433273.0	Mm.304088	NR_004447	ENSMUSG00000097711	Gm5523	EG433273	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101311369-5	chr7	101310942	101311942	+	945.1333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5644.0	NM_001360460	56018.0	Mm.28896	NM_019990	ENSMUSG00000030688	Stard10	AV048538|CGI-52|NY-C0-28|PC-TP2|PCTP2|Pctpl|Sdccag28|SdccagG28|TISP-81	START domain containing 10	protein-coding	37.5	91.0	26.5	38.5	57.5	28.5
Merged-chr8-117341378-2	chr8	117340878	117341878	+	945.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	ORR1D1|LTR|ERVL-MaLR	-7792.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101909718-4	chr5	101909240	101910240	+	945.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 27 of 66)	intron (NM_172882, intron 27 of 66)	144610.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25784277-4	chr7	25783793	25784793	+	945.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 4 of 19)	intron (NM_009465, intron 4 of 19)	4440.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28435117-4	chr17	28434624	28435624	+	945.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 3 of 10)	intron (NM_010220, intron 3 of 10)	51025.0	NM_010220	14229.0	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145264404-3	chr7	145263936	145264936	+	945.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132643, intron 13 of 22)	LTR41B|LTR|ERVL	19575.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	13.5	0.0	4.0	0.0	9.5	3.0
Merged-chr11-77446819-4	chr11	77446349	77447349	+	945.1083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 13 of 14)	intron (NM_177710, intron 13 of 14)	-17064.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-13427071-4	chr1	13426621	13427621	+	945.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-53038.0	NM_008678	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0.0	2.0	4.0	0.0	0.0	0.0
Merged-chr11-78712797-4	chr11	78712299	78713299	+	945.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-15374.0	NM_008702	18099.0	Mm.9001	NM_008702	ENSMUSG00000017376	Nlk	AI194375	nemo like kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57743835-4	chr10	57743329	57744329	+	945.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41094.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156356265-3	chr2	156355767	156356767	+	945.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027585, intron 9 of 12)	intron (NM_027585, intron 9 of 12)	36712.0	NR_024329	347740.0	Mm.324242	NR_024329	ENSMUSG00000102869	2900097C17Rik	1810005K14Rik|4930563C06Rik	RIKEN cDNA 2900097C17 gene	ncRNA	30.5	85.0	58.5	0.5	7.0	0.5
Merged-chr17-33980661-4	chr17	33980172	33981172	+	945.033325	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033305)	promoter-TSS (NR_033305)	-820.0	NR_033305	433100.0	Mm.380381	NM_001013793		AA388235	-	expressed sequence AA388235	ncRNA	146.0	404.5	271.5	12.5	6.5	3.5
Merged-chr17-7877560-4	chr17	7877070	7878070	+	945.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48430.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	6.0	4.5	1.5	3.5	4.0	3.0
Merged-chr16-95659709-4	chr16	95659213	95660213	+	945.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42694.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86218223-1	chr1	86217723	86218723	+	945.0	f0_balb.idr	intron (NM_027456, intron 19 of 20)	intron (NM_027456, intron 19 of 20)	63443.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135652409-4	chr7	135651937	135652937	+	945.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015548)	promoter-TSS (NR_015548)	-123.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137333113-2	chr5	137332613	137333613	+	945.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359611, intron 2 of 14)	intron (NM_001359611, intron 2 of 14)	469.0	NM_031406	83704.0	Mm.235625	NM_031406	ENSMUSG00000037344	Slc12a9	CIP1	solute carrier family 12 (potassium/chloride transporters), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146748899-2	chr5	146748421	146749421	+	945.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 6 of 8)	intron (NM_011669, intron 6 of 8)	46035.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	4.0	9.0	9.5	0.5	9.5	7.0
Merged-chr11-103281267-1	chr11	103280767	103281767	+	945.0	f1_c57bl6.idr	Intergenic	Intergenic	-13866.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	0.0	5.5	10.0	0.5	2.5	4.0
Merged-chr17-6154627-3	chr17	6154129	6155129	+	945.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054040, intron 1 of 13)	intron (NM_054040, intron 1 of 13)	16481.0	NM_054040	68842.0	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	0.0	11.5	0.5	0.0	0.0	3.5
Merged-chr5-35757144-3	chr5	35756656	35757656	+	945.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177696)	promoter-TSS (NM_001177696)	-724.0	NM_001177697	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	6.0	13.5	17.5	29.5	59.5	52.0
Merged-chr11-121686480-2	chr11	121685980	121686980	+	945.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13329.0	NM_178664	210004.0	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25242834-2	chr7	25242334	25243334	+	945.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010155, exon 4 of 4)	3' UTR (NM_010155, exon 4 of 4)	-4983.0	NM_001031667	606496.0	Mm.491101	NM_001031667	ENSMUSG00000057177	Gsk3a	2700086H06Rik	glycogen synthase kinase 3 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-57122946-2	chr2	57122446	57123446	+	945.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001139509, intron 1 of 7)	intron (NM_001139509, intron 1 of 7)	1057.0	NM_001139509	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-44977895-3	chr2	44977441	44978441	+	945.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45236.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134770037-2	chr4	134769537	134770537	+	945.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2033.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117082283-2	chr10	117081783	117082783	+	945.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177798, intron 5 of 9)	intron (NM_177798, intron 5 of 9)	-18431.0	NM_007636	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51091073-2	chr14	51090573	51091573	+	945.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021472)	promoter-TSS (NM_021472)	-4.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	33.5	109.0	44.0	25.5	119.0	84.0
Merged-chr7-114079929-2	chr7	114079429	114080429	+	945.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	37852.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	19.5	61.0	50.5	21.5	61.0	28.0
Merged-chr3-121818990-2	chr3	121818490	121819490	+	945.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-3688.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-19712479-3	chr4	19711994	19712994	+	945.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-3490.0	NR_074090	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.0	3.0	10.0	9.0	6.0	4.5
Merged-chr14-65833312-2	chr14	65832812	65833812	+	945.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028039, intron 1 of 10)	intron (NM_028039, intron 1 of 10)	657.0	NM_028039	71988.0	Mm.249280	NM_028039	ENSMUSG00000022034	Esco2	2410004I17Rik|D030072L07Rik	establishment of sister chromatid cohesion N-acetyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79979049-2	chr10	79978549	79979549	+	945.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359632, intron 4 of 9)	intron (NM_001359632, intron 4 of 9)	5211.0	NM_001359632	216157.0	Mm.29442	NM_001003949	ENSMUSG00000013858	Tmem259	AC087114.7gm2|ORF61|R32184_3|mFLJ00277	transmembrane protein 259	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45509867-3	chr7	45509313	45510313	+	945.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163662, exon 2 of 13)	exon (NM_001163662, exon 2 of 13)	595.0	NM_008749	18220.0	Mm.258923	NM_008749	ENSMUSG00000030824	Nucb1	B230337F23Rik|C77483|Calnuc|MTEST82|Nucb	nucleobindin 1	protein-coding	10.5	13.0	22.0	4.5	9.5	19.5
Merged-chr14-27405765-4	chr14	27405265	27406265	+	945.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23069.0	NM_028945	218850.0	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	20.5	8.0	13.5	0.0	10.5	4.0
Merged-chr17-56075582-2	chr17	56075082	56076082	+	945.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024432, intron 1 of 11)	intron (NM_024432, intron 1 of 11)	3751.0	NM_024432	66530.0	Mm.28000	NM_024432	ENSMUSG00000019578	Ubxn6	1200008L11Rik|2210415J11Rik|AU040909|Ubxd1|Ubxdc2	UBX domain protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164960791-3	chr2	164960292	164961292	+	945.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355480)	promoter-TSS (NM_001355480)	-54.0	NM_001355481	57138.0	Mm.252987	NM_020333	ENSMUSG00000017740	Slc12a5	KCC2|mKIAA1176	solute carrier family 12, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32857361-1	chr18	32856861	32857861	+	945.0	f0_balb.idr	intron (NM_001110015, intron 16 of 22)	intron (NM_001110015, intron 16 of 22)	-20074.0	NR_045381	75795.0	Mm.382634	NR_045381	ENSMUSG00000097553	4930455D15Rik	-	RIKEN cDNA 4930455D15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-12729194-3	chr10	12728703	12729703	+	945.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 13 of 73)	intron (NM_011682, intron 13 of 73)	132532.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58475649-3	chr13	58475154	58476154	+	945.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72311.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110999640-4	chr7	110999157	111000157	+	945.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17196.0	NM_194464	17540.0	Mm.250023	NM_010826	ENSMUSG00000005611	Mrvi1	BB115629|Irag|Ris1	MRV integration site 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5017029-4	chr19	5016529	5017529	+	944.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6977.0	NM_007854	13340.0	Mm.4930	NM_007854	ENSMUSG00000024891	Slc29a2	Der12|Ent2|Hnp36	solute carrier family 29 (nucleoside transporters), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69202532-4	chr3	69202027	69203027	+	944.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-19892.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	4.0	29.0	30.0	5.0	4.0	5.5
Merged-chr2-131087288-3	chr2	131086777	131087777	+	944.9722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011426)	promoter-TSS (NM_011426)	-512.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	45.0	73.0	54.5	33.5	133.0	102.5
Merged-chr17-23786120-4	chr17	23785481	23786481	+	944.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029798)	promoter-TSS (NM_029798)	100.0	NM_029798	76917.0	Mm.269613	NM_029798	ENSMUSG00000023911	Flywch2	2810417J12Rik|3010014L17Rik|AW548203	FLYWCH family member 2	protein-coding	3.5	9.0	6.5	1.0	5.0	9.5
Merged-chr6-83599100-4	chr6	83598584	83599584	+	944.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26580.0	NM_001362080	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-59180585-4	chr6	59180078	59181078	+	944.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28292.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79975291-4	chr10	79974783	79975783	+	944.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130455, intron 3 of 8)	intron (NM_130455, intron 3 of 8)	4559.0	NM_130455	170483.0	Mm.391566	NM_130455	ENSMUSG00000035745	Grin3b	GluN3B|NR3B	glutamate receptor, ionotropic, NMDA3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53860193-4	chr4	53859692	53860692	+	944.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028053, exon 6 of 6)	3' UTR (NM_028053, exon 6 of 6)	34147.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12372203-4	chr17	12371709	12372709	+	944.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6400.0	NM_008877	18815.0	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34249966-4	chr17	34249467	34250467	+	944.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11062.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	12.5	42.0	5.5	27.5	107.5	31.0
Merged-chr7-45068072-4	chr7	45067564	45068564	+	944.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163684, intron 1 of 8)	B2_Mm2|SINE|B2	5635.0	NM_025533	66394.0	Mm.272139	NM_025533	ENSMUSG00000003421	Nosip	2310061K06Rik|CGI-25	nitric oxide synthase interacting protein	protein-coding	0.0	0.0	3.0	0.0	0.0	2.5
Merged-chr11-69935667-6	chr11	69935227	69936227	+	944.922241	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347634)	promoter-TSS (NM_001347634)	-172.0	NM_016875	53422.0	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69630126-2	chr11	69629626	69630626	+	944.9166869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2845.0	NM_011814	23879.0	Mm.41930	NM_011814	ENSMUSG00000018765	Fxr2	Fxr2h	fragile X mental retardation, autosomal homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-56296436-4	chr13	56295900	56296900	+	944.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019568, exon 1 of 4)	5' UTR (NM_019568, exon 1 of 4)	151.0	NM_019568	57266.0	Mm.30211	NM_019568	ENSMUSG00000021508	Cxcl14	1110031L23Rik|1200006I23Rik|AI414372|BMAC|BRAK|KS1|Kec|MIP-2g|MIP2gamma|NJAC|Scyb14|bolekine	chemokine (C-X-C motif) ligand 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79356364-4	chr12	79355895	79356895	+	944.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	59044.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113421674-4	chr13	113421171	113422171	+	944.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81173.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19006651-4	chr7	19006097	19007097	+	944.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178757, exon 1 of 1)	3' UTR (NM_178757, exon 1 of 1)	2532.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	0.0	0.5	5.5	3.0	3.0	4.0
Merged-chr10-30380710-3	chr10	30380209	30381209	+	944.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-180169.0	NM_001109747	66311.0	Mm.251779	NM_001109747	ENSMUSG00000075266	Cenpw	2610036L11Rik|Cug2	centromere protein W	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153609798-4	chr2	153609347	153610347	+	944.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22934.0	NM_001195390	99311.0	Mm.294478	NM_133850	ENSMUSG00000056941	Commd7	2310010I22Rik|AW060956|mU3	COMM domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97408072-4	chr6	97407509	97408509	+	944.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 5 of 23)	ORR1A4-int|LTR|ERVL-MaLR	51277.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148573348-4	chr2	148572848	148573848	+	944.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99267.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180392276-4	chr1	180391767	180392767	+	944.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-61718.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-91697163-4	chr13	91696597	91697597	+	944.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 15 of 15)	intron (NM_001360776, intron 15 of 15)	-44424.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13201959-4	chr10	13201505	13202505	+	944.857178	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8868.0	NM_181470	353258.0	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 ribosome biogenesis factor	protein-coding	1.5	1.5	1.0	1.5	8.0	8.0
Merged-chr4-149562669-2	chr4	149562169	149563169	+	944.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_023465, intron 4 of 4)	intron (NM_023465, intron 4 of 4)	17552.0	NM_001141930	67087.0	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	0.0	1.0	1.0	2.5	8.0	1.5
Merged-chr14-71011135-4	chr14	71010656	71011656	+	944.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121049.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	12.0	13.0	6.5	25.5	1.5	8.0
Merged-chr17-29842427-4	chr17	29841915	29842915	+	944.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081160, intron 8 of 15)	intron (NM_001081160, intron 8 of 15)	45467.0	NM_001081160	74762.0	Mm.40901	NM_001081160	ENSMUSG00000043557	Mdga1	1200011I03Rik|GPIM|Mamdc3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121500362-3	chr3	121499870	121500870	+	944.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145394, intron 9 of 14)	intron (NM_145394, intron 9 of 14)	31974.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-12176393-4	chr12	12175841	12176841	+	944.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85798.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	5.5	5.5	8.0	5.0	18.0	9.0
Merged-chr13-24037717-3	chr13	24037203	24038203	+	944.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026825, intron 33 of 37)	intron (NM_026825, intron 33 of 37)	-46489.0	NM_145399	214189.0	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18733745-4	chr16	18733256	18734256	+	944.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-43091.0	NM_013805	12741.0	Mm.22768	NM_013805	ENSMUSG00000041378	Cldn5	AI854493|MBEC1|Tmvcf	claudin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40709407-3	chr9	40708815	40709815	+	944.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	23351.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	0.0	1.5	5.0	68.0	90.5	111.5
Merged-chr1-61649223-4	chr1	61648725	61649725	+	944.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081050, intron 1 of 22)	intron (NM_001081050, intron 1 of 22)	10401.0	NM_001081050	72823.0	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	3.5	0.0	6.5	0.0	0.0	4.5
Merged-chr17-32100301-2	chr17	32099801	32100801	+	944.8000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-8878.0	NR_027316	435518.0	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-72196731-3	chr2	72196219	72197219	+	944.7999880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355478, intron 8 of 26)	ID_B1|SINE|B4	-88918.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	14.0	18.0	20.0	3.5	4.0	3.0
Merged-chr7-102204726-4	chr7	102204220	102205220	+	944.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287166, intron 1 of 19)	MTD|LTR|ERVL-MaLR	5147.0	NM_001287167	269966.0	Mm.439800	NM_022979	ENSMUSG00000063550	Nup98	4732457F17|AI849286|Nup96	nucleoporin 98	protein-coding	2.0	17.5	14.5	2.0	16.5	10.5
Merged-chr12-59207115-5	chr12	59206569	59207569	+	944.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033156, intron 1 of 3)	B1F|SINE|Alu	12414.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	0.5	7.0	1.5	0.0	2.5	1.0
Merged-chr4-155505199-4	chr4	155504714	155505714	+	944.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160017, intron 1 of 10)	intron (NM_001160017, intron 1 of 10)	13853.0	NM_001160016	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	10.0	22.5	28.5	1.5	24.5	27.5
Merged-chr15-76199465-4	chr15	76198965	76199965	+	944.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201392)	promoter-TSS (NM_201392)	-59.0	NM_201392	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58260779-3	chr15	58260288	58261288	+	944.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45896.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31435763-3	chr3	31435267	31436267	+	944.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-125448.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-109437503-3	chr13	109436997	109437997	+	944.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	112753.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	1.0	7.5	1.0	0.0	0.0	3.5
Merged-chr11-89035732-4	chr11	89035220	89036220	+	944.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25028.0	NM_019505	56077.0	Mm.153695	NM_019505	ENSMUSG00000000276	Dgke	C87606|DAGK6|DGK	diacylglycerol kinase, epsilon	protein-coding	13.0	22.5	23.0	6.5	9.0	2.5
Merged-chr1-133033977-7	chr1	133033388	133034388	+	944.7698359999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3301.0	NM_001302802	17248.0	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	28.5	63.0	51.0	30.5	58.0	52.0
Merged-chr2-92185273-10	chr2	92184749	92185749	+	944.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001109691)	promoter-TSS (NM_001109691)	-234.0	NM_001109691	192285.0	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1	PHD finger protein 21A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24517831-4	chr16	24517347	24518347	+	944.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 3 of 12)	intron (NM_178665, intron 3 of 12)	-11467.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-86100869-4	chr5	86100403	86101403	+	944.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310639, intron 7 of 7)	intron (NM_001310639, intron 7 of 7)	29157.0	NM_001310639	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	9.0	13.0	7.5	9.5	9.5	7.0
Merged-chr1-131761597-4	chr1	131761086	131762086	+	944.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177243, intron 12 of 20)	intron (NM_177243, intron 12 of 20)	17564.0	NM_177243	320718.0	Mm.482704	NM_177243	ENSMUSG00000042268	Slc26a9	E030002L01Rik	solute carrier family 26, member 9	protein-coding	0.0	0.0	0.0	1.5	0.0	0.0
Merged-chr19-56548044-4	chr19	56547517	56548517	+	944.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025811)	promoter-TSS (NM_025811)	105.0	NM_001360437	55947.0	Mm.2805	NM_018831	ENSMUSG00000025077	Dclre1a	2810043H12Rik|AU022226|Pso2|Smn1a|Snm1|mKIAA0086	DNA cross-link repair 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107025831-4	chr13	107025327	107026327	+	944.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015471, intron 1 of 3)	RMER6A|LTR|ERVK	3257.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	3.5	1.5	1.0	0.0	3.0	0.5
Merged-chr7-90026199-4	chr7	90025697	90026697	+	944.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2962.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	1.5	1.0	3.5	10.5	1.0	6.5
Merged-chr4-63817749-4	chr4	63817259	63818259	+	944.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	43525.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127746050-4	chr10	127745538	127746538	+	944.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_198035, exon 2 of 2)	3' UTR (NM_198035, exon 2 of 2)	5760.0	NM_007412	11536.0	Mm.2857	NM_007412	ENSMUSG00000058396	Gpr182	AM-R|Admr|G10-D|Gpcr17|Gpcr22|MB10|NOW	G protein-coupled receptor 182	protein-coding	2.5	2.0	5.0	0.0	1.5	5.0
Merged-chr12-33158426-4	chr12	33157896	33158896	+	944.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028139, intron 2 of 3)	intron (NM_028139, intron 2 of 3)	10710.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	15.5	0.0	2.5	2.0	0.0	4.0
Merged-chr11-79658387-4	chr11	79657888	79658888	+	944.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175543, intron 3 of 14)	MIRb|SINE|MIR	16698.0	NR_045898	72218.0	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA	6.0	16.5	5.5	0.0	0.5	2.0
Merged-chr12-3896182-2	chr12	3895682	3896682	+	944.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 3 of 17)	intron (NM_153743, intron 3 of 17)	4438.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165819701-4	chr2	165819198	165820198	+	944.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027230, intron 13 of 23)	intron (NM_027230, intron 13 of 23)	38475.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92755419-4	chr1	92754907	92755907	+	944.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76238.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-16042267-4	chr16	16041747	16042747	+	944.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 6 of 18)	Lx2|LINE|L1	104604.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34800620-4	chr2	34800134	34801134	+	944.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145522)	promoter-TSS (NM_145522)	-722.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80295824-4	chr10	80295304	80296304	+	944.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	3295.0	NM_001310726	20054.0	Mm.643	NM_009091	ENSMUSG00000063457	Rps15	rig	ribosomal protein S15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98907385-3	chr10	98906928	98907928	+	944.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7214.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-83687192-2	chr12	83686692	83687692	+	944.6666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362271)	promoter-TSS (NM_001362271)	-960.0	NM_001362271	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-38028135-3	chr13	38027631	38028631	+	944.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027724, exon 3 of 13)	exon (NM_027724, exon 3 of 13)	8806.0	NM_027724	71213.0	Mm.314688	NM_027724	ENSMUSG00000044566	Cage1	4933427I01Rik|Ctag3	cancer antigen 1	protein-coding	18.0	24.5	35.5	0.0	3.5	3.0
Merged-chr3-95141639-4	chr3	95141138	95142138	+	944.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027206, intron 1 of 1)	intron (NM_027206, intron 1 of 1)	722.0	NM_027206	69769.0	Mm.34368	NM_027206	ENSMUSG00000013707	Tnfaip8l2	1810019A08Rik|AW610835|TIPE2	tumor necrosis factor, alpha-induced protein 8-like 2	protein-coding	15.0	26.0	28.5	6.5	36.0	27.0
Merged-chr7-129403943-4	chr7	129403535	129404535	+	944.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146941.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145857647-3	chr6	145857139	145858139	+	944.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_024469)	TTS (NM_024469)	7781.0	NM_024469	79362.0	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-126483489-3	chr2	126482998	126483998	+	944.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 2 of 27)	intron (NM_001359975, intron 2 of 27)	8055.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50978753-4	chr6	50978255	50979255	+	944.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	202640.0	NR_045984	319981.0	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-57849320-3	chr1	57848823	57849823	+	944.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164566, intron 1 of 11)	MER5A|DNA|hAT-Charlie	3752.0	NM_001164566	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	20.0	7.5	6.0	38.5	49.5	22.5
Merged-chr18-39446135-4	chr18	39445632	39446632	+	944.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	41113.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97148887-2	chr11	97148387	97149387	+	944.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_198100, intron 2 of 8)	intron (NM_198100, intron 2 of 8)	825.0	NM_198100	73174.0	Mm.27882	NM_198100	ENSMUSG00000038517	Tbkbp1	3110043L15Rik|ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-51534019-4	chr6	51533523	51534523	+	944.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361581, intron 1 of 6)	intron (NM_001361581, intron 1 of 6)	9763.0	NM_001361580	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50171114-2	chr17	50170614	50171614	+	944.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 1 of 9)	intron (NM_181397, intron 1 of 9)	19383.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64809522-4	chr5	64809043	64810043	+	944.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	6020.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136124454-4	chr1	136123942	136124942	+	944.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6741.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75548092-4	chr11	75547595	75548595	+	944.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 5 of 13)	L1ME3G|LINE|L1	-3334.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	8.5	37.5	22.5	33.0	50.5	30.0
Merged-chr15-96588814-4	chr15	96588333	96589333	+	944.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166456, intron 8 of 15)	intron (NM_001166456, intron 8 of 15)	53129.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-124056558-4	chr9	124056004	124057004	+	944.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34533.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124579470-4	chr2	124578994	124579994	+	944.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-30802.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99421360-4	chr15	99420828	99421828	+	944.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001001884)	TTS (NM_001001884)	28109.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	14.5	25.5	24.0	16.0	25.0	25.5
Merged-chr14-54449163-4	chr14	54448698	54449698	+	944.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14949.0	NM_022993	65107.0	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	0.0	2.5	3.0	0.0	0.5	0.0
Merged-chr1-162665298-4	chr1	162664796	162665796	+	944.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7077.0	NM_001177581	100038657.0	Mm.416999	NM_001177581	ENSMUSG00000091060	Myocos	7420461P10Rik	myocilin opposite strand	protein-coding	8.5	26.5	6.5	13.5	22.0	5.5
Merged-chr19-10740900-3	chr19	10740398	10741398	+	944.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027805)	promoter-TSS (NR_027805)	-49.0	NR_027805	403202.0	Mm.34482	NM_207529	ENSMUSG00000067577	A430093F15Rik	Gm674	RIKEN cDNA A430093F15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27501825-3	chr17	27501324	27502324	+	944.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013385, intron 1 of 8)	intron (NM_001013385, intron 1 of 8)	1709.0	NM_001013385	268934.0	Mm.358940	NM_001013385	ENSMUSG00000063239	Grm4	Gprc1d|mGluR4	glutamate receptor, metabotropic 4	protein-coding	0.0	0.0	0.0	1.5	0.0	0.0
Merged-chr3-87619292-4	chr3	87618794	87619794	+	944.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360197, intron 1 of 38)	intron (NM_001360197, intron 1 of 38)	1735.0	NM_001360195	213498.0	Mm.287267	NM_001003912	ENSMUSG00000041977	Arhgef11	PDZ-RhoGEF|Prg|RhoGEF|mKIAA0380	Rho guanine nucleotide exchange factor (GEF) 11	protein-coding	29.0	54.5	36.5	42.5	89.0	87.0
Merged-chr6-34876816-3	chr6	34876358	34877358	+	944.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001135611, intron 1 of 3)	intron (NM_001135611, intron 1 of 3)	1207.0	NM_199145	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11280178-9	chr2	11279657	11280657	+	944.552917	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 14 of 17)	intron (NM_008859, intron 14 of 17)	-59332.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122736344-4	chr10	122735880	122736880	+	944.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	57065.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-112183394-3	chr7	112182915	112183915	+	944.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23933.0	NM_001360257	50781.0	Mm.55143	NM_015814	ENSMUSG00000030772	Dkk3	AW061014|C87148|dkk-3|mDkk-3	dickkopf WNT signaling pathway inhibitor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61931202-2	chr11	61930702	61931702	+	944.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019921)	promoter-TSS (NM_019921)	-945.0	NM_019921	56697.0	Mm.274404	NM_019921	ENSMUSG00000047804	Akap10	1500031L16Rik|B130049N18Rik|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5489285-2	chr17	5488785	5489785	+	944.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3315.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121762189-2	chr3	121761689	121762689	+	944.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008991, intron 21 of 22)	MER20|DNA|hAT-Charlie	38652.0	NM_010171	14066.0	Mm.273188	NM_010171	ENSMUSG00000028128	F3	AA409063|CD142|Cf-3|Cf3|TF	coagulation factor III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112283719-4	chr5	112283235	112284235	+	944.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	7044.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-86547092-2	chr3	86546592	86547592	+	944.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011839, exon 1 of 1)	exon (NM_011839, exon 1 of 1)	1191.0	NM_011839	23937.0	Mm.389466	NM_011839	ENSMUSG00000057777	Mab21l2	-	mab-21-like 2 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23552383-2	chr17	23551883	23552883	+	944.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_126484, intron 1 of 1)	intron (NR_126484, intron 1 of 1)	1584.0	NR_126484	320020.0	Mm.445111	NR_126484		6330415G19Rik	-	RIKEN cDNA 6330415G19 gene	ncRNA	0.5	0.0	1.0	2.0	0.0	0.0
Merged-chr17-64330645-2	chr17	64330145	64331145	+	944.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025309, intron 1 of 9)	intron (NM_001025309, intron 1 of 9)	1238.0	NM_144859	224938.0	Mm.489681	NM_144859	ENSMUSG00000024083	Pja2	AI447901|AL022700|Neurodap1|mKIAA0438	praja ring finger ubiquitin ligase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29522586-2	chr6	29522086	29523086	+	944.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4039.0	NM_001311083	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80665368-5	chr10	80664951	80665951	+	944.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021462, exon 14 of 14)	3' UTR (NM_021462, exon 14 of 14)	-8380.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-73470610-2	chr6	73470111	73471111	+	944.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025737)	promoter-TSS (NM_025737)	410.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr2-84820097-3	chr2	84819597	84820597	+	944.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024230, intron 1 of 7)	intron (NM_024230, intron 1 of 7)	2555.0	NM_024230	68678.0	Mm.33452	NM_024230	ENSMUSG00000027077	Smtnl1	1110030K22Rik|CHASM	smoothelin-like 1	protein-coding	4.5	5.5	1.5	4.0	0.5	12.0
Merged-chr11-80200593-2	chr11	80200093	80201093	+	944.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028019)	TTS (NM_028019)	-8462.0	NM_001163354	59040.0	Mm.489674	NM_021536	ENSMUSG00000017686	Rhot1	2210403N23Rik|AA415293|AF244542|AI834919|Arht1|C430039G08Rik|Miro1	ras homolog family member T1	protein-coding	3.5	0.0	0.0	0.5	4.0	1.5
Merged-chr11-69948421-7	chr11	69947918	69948918	+	944.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009204)	promoter-TSS (NM_009204)	-221.0	NM_001359114	20528.0	Mm.10661	NM_009204	ENSMUSG00000018566	Slc2a4	GT2|Glut-4|Glut4|twgy	solute carrier family 2 (facilitated glucose transporter), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60934528-2	chr11	60934028	60935028	+	944.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008928, intron 1 of 11)	intron (NM_008928, intron 1 of 11)	2471.0	NM_008928	26397.0	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133158726-2	chr4	133158226	133159226	+	944.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	28093.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	217.5	405.5	282.5	125.0	302.0	204.0
Merged-chr1-138957277-2	chr1	138956777	138957777	+	944.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6432.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6818428-2	chr2	6817928	6818928	+	944.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 3 of 15)	intron (NM_001110232, intron 3 of 15)	53607.0	NM_001347094	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134703849-4	chr4	134703359	134704359	+	944.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_207237, exon 1 of 12)	5' UTR (NM_207237, exon 1 of 12)	431.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160613846-2	chr2	160613346	160614346	+	944.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32051.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136043956-3	chr4	136043463	136044463	+	944.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7696.0	NR_154592	105245868.0		NR_154592		Gm48909	-	predicted gene, 48909	pseudo	1.0	0.0	0.0	2.0	1.0	6.5
Merged-chr16-94517841-4	chr16	94517305	94518305	+	944.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 1 of 7)	Lx5c|LINE|L1	8824.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25267885-2	chr15	25267385	25268385	+	944.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	145879.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4865867-2	chr7	4865364	4866364	+	944.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026158, intron 1 of 5)	intron (NM_026158, intron 1 of 5)	315.0	NM_026158	67441.0	Mm.41385	NM_026158	ENSMUSG00000052605	Isoc2b	0610042E07Rik|AI553388|Isoc2	isochorismatase domain containing 2b	protein-coding	1.5	41.0	19.0	13.5	36.0	10.5
Merged-chr2-45238336-2	chr2	45237836	45238836	+	944.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120894.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-84196445-3	chr7	84195940	84196940	+	944.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44547.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76748908-3	chr14	76748396	76749396	+	944.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11235.0	NR_153763	73883.0	Mm.489041	NR_153763		4930431P22Rik	-	RIKEN cDNA 4930431P22 gene	ncRNA	5.0	0.0	0.0	0.0	0.0	1.5
Merged-chr11-6178840-3	chr11	6178350	6179350	+	944.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173748, intron 2 of 5)	intron (NM_173748, intron 2 of 5)	-5519.0	NR_029471	100042173.0	Mm.441799	NR_029471		Rps15a-ps6	Gm11968	ribosomal protein S15A, pseudogene 6	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-51509425-4	chr6	51508924	51509924	+	944.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14479.0	NM_001361582	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	21.5	13.0	1.5	3.5	6.5	5.5
Merged-chr5-64811320-3	chr5	64810784	64811784	+	944.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	7761.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-29972964-4	chr5	29972470	29973470	+	944.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40144.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113580486-4	chr13	113579998	113580998	+	944.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38066.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182959355-4	chr1	182958853	182959853	+	944.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016928, intron 1 of 3)	intron (NM_016928, intron 1 of 3)	4565.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120908334-3	chr6	120907828	120908828	+	944.400024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007544, intron 1 of 5)	BGLII|LTR|ERVK	8496.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	2.0	8.0	4.0	3.0	0.5	1.0
Merged-chr7-81904361-4	chr7	81903877	81904877	+	944.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013886, intron 2 of 5)	MLT1J|LTR|ERVL-MaLR	30082.0	NM_013886	29877.0	Mm.392934	NM_013886	ENSMUSG00000025104	Hdgfl3	2700022B06Rik|HRP-3|Hdgfrp3	HDGF like 3	protein-coding	1.0	3.0	4.0	6.0	6.5	5.0
Merged-chr8-10832165-6	chr8	10831706	10832706	+	944.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CCCCCA)n|Simple_repeat|Simple_repeat	50248.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76610539-4	chr16	76610034	76611034	+	944.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61739.0	NR_155449	102632730.0		NR_155449		Gm30726	-	predicted gene, 30726	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25603542-4	chr8	25603106	25604106	+	944.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001735, intron 1 of 9)	intron (NM_001001735, intron 1 of 9)	1322.0	NM_001308482	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71662791-4	chr17	71662312	71663312	+	944.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10449.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54563011-4	chr11	54562521	54563521	+	944.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 5 of 28)	ID_B1|SINE|B4	-33125.0	NM_001252498	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106160205-7	chr11	106159873	106160873	+	944.3618769999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356459)	promoter-TSS (NM_001356459)	-197.0	NM_172397	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120268707-4	chr14	120268196	120269196	+	944.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6973.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62170542-2	chr18	62170042	62171042	+	944.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9439.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91582471-1	chr6	91581971	91582971	+	944.3333130000001	f0_balb.idr	Intergenic	L1MC4a|LINE|L1	66436.0	NM_026309	67678.0	Mm.246693	NM_026309	ENSMUSG00000034192	Lsm3	1010001J12Rik|2610005D18Rik|6030401D18Rik|SMX4|USS2	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-4912261-3	chr5	4911750	4912750	+	944.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 12 of 14)	intron (NM_011074, intron 12 of 14)	-154034.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-132426073-3	chr5	132425570	132426570	+	944.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177047, intron 1 of 19)	ORR1E|LTR|ERVL-MaLR	116273.0	NM_177047	319974.0	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95751187-2	chr11	95750687	95751687	+	944.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_201609, intron 1 of 4)	intron (NM_201609, intron 1 of 4)	2120.0	NM_201609	268469.0	Mm.389038	NM_201609	ENSMUSG00000075595	Zfp652	9530033F24Rik|ZNF652	zinc finger protein 652	protein-coding	0.0	0.5	2.5	0.0	1.5	3.0
Merged-chr14-50842697-4	chr14	50842201	50843201	+	944.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009351, intron 28 of 54)	MTE2b|LTR|ERVL-MaLR	27853.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	35.5	67.5	70.5	17.5	51.0	60.5
Merged-chr10-88379687-3	chr10	88379193	88380193	+	944.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004164, intron 1 of 20)	CpG	281.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43798076-3	chr7	43797562	43798562	+	944.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008940, exon 1 of 5)	5' UTR (NM_008940, exon 1 of 5)	485.0	NM_008940	259277.0	Mm.458023	NM_008940	ENSMUSG00000064023	Klk8	BSP1|NP|Nrpn|Prss19	kallikrein related-peptidase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-66502171-3	chr18	66501703	66502703	+	944.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1975.0	NR_040528	100503565.0	Mm.98256	NR_040528		Gm9926	-	predicted gene 9926	ncRNA	0.0	0.0	0.0	0.0	0.0	4.5
Merged-chr14-121422114-4	chr14	121421624	121422624	+	944.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42894.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88502838-3	chr3	88502340	88503340	+	944.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001111102, exon 1 of 10)	exon (NM_001111102, exon 1 of 10)	512.0	NM_001111102	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-100741763-4	chr10	100741214	100742214	+	944.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152765)	promoter-TSS (NR_152765)	-79.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-114970950-4	chr4	114970451	114971451	+	944.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025647, intron 1 of 5)	intron (NM_025647, intron 1 of 5)	16277.0	NM_025647	66588.0	Mm.294159	NM_025647	ENSMUSG00000028719	Cmpk1	0610011D08Rik|CK|Cmpk|UMP-CMPk	cytidine monophosphate (UMP-CMP) kinase 1	protein-coding	1.5	5.5	8.0	3.0	2.5	7.0
Merged-chr3-75499148-4	chr3	75498676	75499676	+	944.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57676.0	NM_019745	56426.0	Mm.316473	NM_019745	ENSMUSG00000027835	Pdcd10	2410003B13Rik|Ccm3|Tfa15|Tfar15	programmed cell death 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60076952-3	chr2	60076454	60077454	+	944.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 1 of 35)	intron (NM_001001182, intron 1 of 35)	48786.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-15203020-3	chr3	15202517	15203517	+	944.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	129285.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100422687-3	chr12	100422174	100423174	+	944.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 5 of 19)	intron (NM_001033213, intron 5 of 19)	98148.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120932851-4	chr11	120932356	120933356	+	944.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027745)	promoter-TSS (NM_027745)	16.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-83306928-4	chr4	83306436	83307436	+	944.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 1 of 19)	RSINE1|SINE|B4	17253.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57603108-4	chr10	57602619	57603619	+	944.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28862.0	NM_008863	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93577694-4	chr10	93577177	93578177	+	944.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175488, intron 13 of 15)	intron (NM_175488, intron 13 of 15)	-11736.0	NR_045810	74454.0	Mm.410794	NR_045810	ENSMUSG00000097407	4933408J17Rik	-	RIKEN cDNA 4933408J17 gene	ncRNA	1.0	0.0	4.5	0.0	0.0	0.0
Merged-chr2-58281284-3	chr2	58280783	58281783	+	944.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040365, exon 3 of 4)	non-coding (NR_040365, exon 3 of 4)	4504.0	NR_040365	100502932.0	Mm.417207	NR_040365	ENSMUSG00000086995	Gm13544	-	predicted gene 13544	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118216099-6	chr11	118215618	118216618	+	944.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	MTD|LTR|ERVL-MaLR	-3376.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147938917-3	chr4	147938422	147939422	+	944.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1973.0	NM_029841	77034.0	Mm.183076	NM_029841	ENSMUSG00000044496	2510039O18Rik	Kiaa2013	RIKEN cDNA 2510039O18 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3868765-4	chr12	3868246	3869246	+	944.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 4 of 22)	intron (NM_007872, intron 4 of 22)	-6502.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122283554-4	chr8	122283025	122284025	+	944.241699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009569, intron 1 of 9)	intron (NM_009569, intron 1 of 9)	1384.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29248053-3	chr6	29247567	29248567	+	944.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-24421.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119841199-3	chr8	119840736	119841736	+	944.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028071)	promoter-TSS (NM_028071)	-657.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55485953-4	chr12	55485443	55486443	+	944.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	6704.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83082983-4	chr11	83082474	83083474	+	944.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	SRV_MM-int|LTR|ERVK	17862.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-66323223-4	chr8	66322710	66323710	+	944.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 4 of 7)	intron (NM_175188, intron 4 of 7)	-63091.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-17218370-4	chr19	17217866	17218866	+	944.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181348, intron 19 of 19)	intron (NM_181348, intron 19 of 19)	121139.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	44.0	120.5	61.0	20.0	81.0	60.5
Merged-chr17-26235561-4	chr17	26235145	26236145	+	944.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	8597.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	34.0	108.0	78.0	36.0	70.0	35.0
Merged-chr15-78304029-3	chr15	78303529	78304529	+	944.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287389, intron 1 of 11)	intron (NM_001287389, intron 1 of 11)	1692.0	NM_007781	12984.0	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	8.0	20.5	27.0	33.0	30.5	20.0
Merged-chr2-52483689-4	chr2	52483190	52484190	+	944.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	-58816.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180215245-4	chr1	180214754	180215754	+	944.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19234.0	NM_001359268	67426.0	Mm.38330	NM_023341	ENSMUSG00000026489	Coq8a	4632432J16Rik|AI462003|Adck3|Cabc1|mKIAA0451	coenzyme Q8A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-62516341-4	chr17	62515839	62516839	+	944.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	364978.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28810322-3	chr17	28809824	28810824	+	944.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081315, intron 2 of 12)	intron (NM_001081315, intron 2 of 12)	9198.0	NM_001081315	268936.0	Mm.291877	NM_199061	ENSMUSG00000063952	Brpf3	AI413466|AW493400|mKIAA1286	bromodomain and PHD finger containing, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-115210913-2	chr13	115210413	115211413	+	944.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108949.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-35308668-4	chr11	35308175	35309175	+	944.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011412, intron 4 of 35)	intron (NM_011412, intron 4 of 35)	187219.0	NM_011412	20564.0	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit guidance ligand 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-63873657-4	chr17	63873164	63874164	+	944.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 1 of 18)	intron (NM_001037997, intron 1 of 18)	-4402.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-84619853-4	chr11	84619360	84620360	+	944.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME3Cz|LINE|L1	94200.0	NR_038057	78365.0	Mm.260345	NR_038057	ENSMUSG00000087211	Lhx1os	1500016L03Rik|Lhx1as	LIM homeobox 1, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-58735286-4	chr6	58734788	58735788	+	944.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96177.0	NM_001361967	73998.0	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37290224-4	chr10	37289720	37290720	+	944.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-151294.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127993751-4	chr7	127993237	127994237	+	944.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_023258, exon 1 of 3)	5' UTR (NM_023258, exon 1 of 3)	130.0	NM_023258	66824.0	Mm.24163	NM_023258	ENSMUSG00000030793	Pycard	9130417A21Rik|Asc|CARD5|TMS-1|TNS1|masc	PYD and CARD domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11875411-4	chr16	11874911	11875911	+	944.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146067, intron 2 of 3)	intron (NM_146067, intron 2 of 3)	-25953.0	NR_033509	791359.0	Mm.227592	NR_033509	ENSMUSG00000055015	Gm9961	-	predicted gene 9961	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-42011088-4	chr18	42010532	42011532	+	944.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-11983.0	NM_001033426	332309.0	Mm.240520	NM_001033426	ENSMUSG00000073574	Grxcr2	Gm851	glutaredoxin, cysteine rich 2	protein-coding	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr18-15140464-4	chr18	15139957	15140957	+	944.1083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134112, intron 1 of 4)	intron (NM_134112, intron 1 of 4)	10989.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	16.0	0.0	3.5	0.5	4.5	7.5
Merged-chr16-55853086-4	chr16	55852585	55853585	+	944.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134457, intron 4 of 5)	intron (NM_001134457, intron 4 of 5)	-14444.0	NM_001159395	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-91631569-3	chr13	91631023	91632023	+	944.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 4 of 15)	intron (NM_001360776, intron 4 of 15)	-109998.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	10.5	6.5	1.0	7.5	10.5	3.5
Merged-chr1-63567240-4	chr1	63566738	63567738	+	944.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011780, intron 21 of 25)	intron (NM_011780, intron 21 of 25)	119689.0	NM_001081658	241073.0	Mm.297680	NM_001081658	ENSMUSG00000069085	Dytn	Gm215	dystrotelin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134824588-4	chr6	134824017	134825017	+	944.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-5682.0	NM_177687	232430.0	Mm.267010	NM_177687	ENSMUSG00000032652	Crebl2	AI046348|B230205M03	cAMP responsive element binding protein-like 2	protein-coding	0.0	6.5	5.0	0.0	0.0	2.0
Merged-chr3-148978277-4	chr3	148977777	148978777	+	944.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23642.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	2.0	6.0	3.5	9.5	15.5	6.5
Merged-chr18-57052320-3	chr18	57051826	57052826	+	944.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76947.0	NM_029909	77422.0	Mm.256874	NM_029909	ENSMUSG00000024592	C330018D20Rik	AU018666	RIKEN cDNA C330018D20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3650572-5	chr4	3650068	3651068	+	944.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5938.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	0.5	0.0	2.0	3.5	0.0	0.0
Merged-chr14-16454833-4	chr14	16454343	16455343	+	944.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289760, intron 5 of 9)	GA-rich|Low_complexity|Low_complexity	89637.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109458232-3	chr8	109457745	109458745	+	944.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35782.0	NM_019938	56523.0	Mm.42166	NM_019938	ENSMUSG00000031727	Pmfbp1	1700016D22Rik|F77|Stap	polyamine modulated factor 1 binding protein 1	protein-coding	9.5	10.5	10.0	15.0	19.0	24.5
Merged-chr5-115507383-3	chr5	115506844	115507844	+	944.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	668.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	55.5	194.0	117.0	91.5	366.0	207.0
Merged-chr10-14678494-3	chr10	14677989	14678989	+	944.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025418, intron 4 of 7)	intron (NM_025418, intron 4 of 7)	27000.0	NM_025418	66201.0	Mm.227983	NM_025418	ENSMUSG00000019868	Vta1	1110001D18Rik|1110059P08Rik|AU040813|C85340|LIP5|SBP1	vesicle (multivesicular body) trafficking 1	protein-coding	15.0	5.0	3.0	1.5	5.5	0.0
Merged-chr9-88939173-4	chr9	88938642	88939642	+	944.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17778.0	NM_009742	12044.0	Mm.425593	NM_009742	ENSMUSG00000102037	Bcl2a1a	A1|BB218357|Bcl2a1|Bfl-1|Hbpa1	B cell leukemia/lymphoma 2 related protein A1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152608987-4	chr1	152608489	152609489	+	944.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	16228.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-48593047-4	chr4	48592557	48593557	+	944.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021436, intron 1 of 9)	intron (NM_021436, intron 1 of 9)	7883.0	NM_021436	230157.0	Mm.422686	NM_021436	ENSMUSG00000028347	Tmeff1	A830033E11|M7365|TR-1|Tr1	transmembrane protein with EGF-like and two follistatin-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46769538-4	chr8	46769068	46770068	+	944.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	ORR1E|LTR|ERVL-MaLR	29823.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-46881112-4	chr14	46880614	46881614	+	944.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1851.0	NM_028966	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	17.0	37.5	40.5	12.5	22.5	36.5
Merged-chr11-118270442-4	chr11	118269925	118270925	+	944.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033528, intron 13 of 20)	intron (NM_001033528, intron 13 of 20)	19819.0	NM_001033528	72344.0	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-46884945-4	chr14	46884412	46885412	+	944.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028966, exon 2 of 12)	exon (NM_028966, exon 2 of 12)	1947.0	NM_001037221	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	22.0	78.5	60.5	15.0	27.0	23.0
Merged-chr10-75492108-4	chr10	75491639	75492639	+	944.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	25242.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29170227-8	chr7	29169805	29170805	+	944.0104369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182696)	promoter-TSS (NM_182696)	95.0	NM_182694	243897.0	Mm.389886	NM_182694	ENSMUSG00000031493	Ggn	AI593290	gametogenetin	protein-coding	31.0	56.5	59.5	2.0	18.0	24.0
Merged-chr1-92831789-3	chr1	92831285	92832285	+	944.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_016696, exon 1 of 9)	5' UTR (NM_016696, exon 1 of 9)	140.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34051401-1	chr17	34050901	34051901	+	944.0	f1_c57bl6.idr	intron (NM_009926, intron 12 of 63)	intron (NM_009926, intron 12 of 63)	12263.0	NM_001317722	12815.0	Mm.20230	NM_009926	ENSMUSG00000024330	Col11a2	-	collagen, type XI, alpha 2	protein-coding	0.0	1.5	0.0	0.0	3.0	2.5
Merged-chr7-80753901-1	chr7	80753401	80754401	+	944.0	f1_c57bl6.idr	intron (NM_016721, intron 11 of 37)	intron (NM_016721, intron 11 of 37)	49430.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	35.5	69.5	56.5	15.5	125.5	69.0
Merged-chr13-107888169-2	chr13	107887669	107888669	+	944.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	1895.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150025332-2	chr4	150024832	150025832	+	944.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-16309.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	3.0	0.0	1.5	0.0	3.0	0.0
Merged-chr18-80177358-2	chr18	80176858	80177858	+	944.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8881.0	NR_131039	105246506.0	Mm.392326	NR_131039		LOC105246506	-	uncharacterized LOC105246506	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58504909-2	chr16	58504409	58505409	+	944.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 2 of 10)	intron (NM_001357433, intron 2 of 10)	18517.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108768367-2	chr12	108767867	108768867	+	944.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24944.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90128861-2	chr7	90128361	90129361	+	944.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_046006, intron 1 of 3)	intron (NR_046006, intron 1 of 3)	613.0	NR_046006	78329.0	Mm.389940	NR_046006	ENSMUSG00000097162	2310010J17Rik	-	RIKEN cDNA 2310010J17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117342587-3	chr8	117342093	117343093	+	944.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-6577.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61377860-3	chr18	61377356	61378356	+	944.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133249, intron 1 of 11)	intron (NM_133249, intron 1 of 11)	20044.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83651649-2	chr7	83651149	83652149	+	944.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 14 of 18)	intron (NM_001360088, intron 14 of 18)	3846.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	1.0	2.0	2.5	1.0	0.0	1.0
Merged-chr12-32245489-4	chr12	32244994	32245994	+	944.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-36845.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	9.0	2.0	1.5	9.5	12.5	3.5
Merged-chr11-51917246-4	chr11	51916765	51917765	+	944.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-50366.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	16.0	37.0	32.5	16.5	34.5	35.5
Merged-chr7-72166455-3	chr7	72165907	72166907	+	944.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024703, intron 14 of 22)	intron (NM_001024703, intron 14 of 22)	140188.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35554337-2	chr18	35553837	35554837	+	944.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035472)	promoter-TSS (NR_035472)	-230.0	NR_035472	100316700.0		NR_035472	ENSMUSG00000105743	Mir1949	mir-1949|mmu-mir-1949	microRNA 1949	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69158202-1	chr3	69157702	69158702	+	944.0	f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	26969.0	NR_126533	381452.0	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	5.5	1.5	9.0	8.5	10.0	14.5
Merged-chr2-34104133-2	chr2	34103633	34104633	+	944.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_130173, intron 1 of 3)	intron (NR_130173, intron 1 of 3)	3602.0	NR_130173	329387.0	Mm.125817	NR_130173	ENSMUSG00000087461	C230014O12Rik	-	RIKEN cDNA C230014O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32577291-2	chr2	32576791	32577791	+	944.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198191, intron 2 of 9)	intron (NM_198191, intron 2 of 9)	1573.0	NM_198191	227733.0	Mm.78923	NM_198191	ENSMUSG00000046854	Pip5kl1	BC028795	phosphatidylinositol-4-phosphate 5-kinase-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-54601290-3	chr3	54600791	54601791	+	944.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91524.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	23.5	58.5	34.5	0.0	11.5	6.5
Merged-chr12-85673431-2	chr12	85672931	85673931	+	944.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-13289.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123005245-3	chr8	123004749	123005749	+	944.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	37035.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0.0	32.0	12.5	2.5	28.5	5.5
Merged-chr6-120112067-1	chr6	120111567	120112567	+	944.0	f0_c57.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	18687.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-62400342-1	chr7	62399842	62400842	+	944.0	f0_balb.idr	Intergenic	Intergenic	19797.0	NM_011746	22652.0	Mm.146	NM_011746	ENSMUSG00000070527	Mkrn3	D7H15S9-1|Zfp127	makorin, ring finger protein, 3	protein-coding	2.0	3.0	0.0	2.0	3.0	0.0
Merged-chr11-106776342-2	chr11	106775842	106776842	+	944.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001353435, intron 3 of 7)	AT_rich|Low_complexity|Low_complexity	3124.0	NM_001353435	50776.0	Mm.859	NM_015810	ENSMUSG00000020718	Polg2	mtPolB|p55|polG-beta	polymerase (DNA directed), gamma 2, accessory subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-59237813-3	chr1	59237306	59238306	+	944.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028717)	promoter-TSS (NM_028717)	-575.0	NM_028717	74018.0	Mm.272078	NM_028717	ENSMUSG00000026024	Als2	3222402C23Rik|9430073A21Rik|Als2cr6|Alsin|mKIAA1563	alsin Rho guanine nucleotide exchange factor	protein-coding	84.0	135.0	101.0	43.5	148.5	106.0
Merged-chr6-97803837-4	chr6	97803349	97804349	+	944.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3209.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	9.5	29.0	12.5	5.0	15.5	7.0
Merged-chr13-64308194-4	chr13	64307708	64308708	+	944.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025370, intron 4 of 5)	MTD|LTR|ERVL-MaLR	4502.0	NM_025370	66129.0	Mm.491110	NM_025370	ENSMUSG00000021482	Aaed1	1110018J18Rik|AI849003	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding	24.5	52.0	50.5	66.5	175.5	98.0
Merged-chr5-63935620-2	chr5	63935120	63936120	+	944.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145923, intron 3 of 6)	intron (NM_145923, intron 3 of 6)	33277.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-59185921-2	chr14	59185421	59186421	+	944.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7172.0	NM_001004158	380907.0	Mm.81009	NM_001004158	ENSMUSG00000053868	Gm5142	EG380907	predicted gene 5142	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5589834-4	chr6	5589321	5590321	+	943.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93543.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-66393084-4	chr8	66392558	66393558	+	943.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 5 of 7)	intron (NM_175188, intron 5 of 7)	6757.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102243605-4	chr15	102243094	102244094	+	943.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011244, intron 3 of 9)	intron (NM_011244, intron 3 of 9)	2906.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27616372-4	chr15	27615901	27616901	+	943.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001013792, exon 4 of 7)	exon (NM_001013792, exon 4 of 7)	14292.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127114539-4	chr10	127114046	127115046	+	943.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177614, intron 5 of 13)	intron (NM_177614, intron 5 of 13)	6614.0	NM_177614	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79924075-7	chr10	79923616	79924616	+	943.9523929999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	RLTR12A|LTR|ERVK	-2927.0	NM_001288626	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100123699-4	chr7	100123211	100124211	+	943.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2211.0	NM_133692	67967.0	Mm.37562	NM_133692	ENSMUSG00000030726	Pold3	2410142G14Rik|C85233|P66|P68	polymerase (DNA-directed), delta 3, accessory subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95279040-3	chr10	95278539	95279539	+	943.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	MTD|LTR|ERVL-MaLR	44670.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72241718-3	chr5	72241221	72242221	+	943.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 4 of 22)	intron (NR_003966, intron 4 of 22)	38378.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8199246-4	chr17	8198736	8199736	+	943.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33718.0	NM_201230	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	9.5	7.5	11.5	15.0	13.0	6.5
Merged-chr2-170164329-4	chr2	170163803	170164803	+	943.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21628.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.5	1.5	0.0	4.5	3.5	1.0
Merged-chr7-142444329-4	chr7	142443825	142444825	+	943.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009405)	TTS (NM_009405)	1857.0	NM_009405	21953.0	Mm.39469	NM_009405	ENSMUSG00000031097	Tnni2	-	troponin I, skeletal, fast 2	protein-coding	1.5	8.0	4.0	3.0	0.5	3.0
Merged-chr17-6960917-4	chr17	6960417	6961417	+	943.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_147155, intron 1 of 3)	CpG	239.0	NM_147155	380608.0	Mm.371734	NM_147155	ENSMUSG00000052031	Tagap1	2610315E15Rik|AA415005|FKSG15	T cell activation GTPase activating protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-126923792-4	chr3	126923317	126924317	+	943.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001327939, exon 46 of 46)	3' UTR (NM_001327939, exon 46 of 46)	19569.0	NM_001034168	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	6.0	0.0	2.5	2.5	0.0	2.5
Merged-chr9-44213693-4	chr9	44213201	44214201	+	943.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 1 of 15)	intron (NM_007619, intron 1 of 15)	20345.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	5.0	15.5	18.0	18.5	31.5	12.5
Merged-chr1-170176962-4	chr1	170176454	170177454	+	943.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1990.0	NM_001305045	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9110411-4	chr19	9109942	9110942	+	943.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22486.0	NM_011681	22287.0	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	0.0	0.0	0.0	4.0	5.0	3.5
Merged-chr7-101548374-3	chr7	101547858	101548858	+	943.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	7444.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	104.0	230.0	111.5	34.0	106.0	63.0
Merged-chr1-138044711-3	chr1	138044208	138045208	+	943.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78069.0	NR_029820	723890.0		NR_029820	ENSMUSG00000065458	Mir181b-1	Mirn181b-1|mir-181b-1	microRNA 181b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120479509-4	chr14	120479003	120480003	+	943.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029519, intron 1 of 1)	intron (NM_029519, intron 1 of 1)	1042.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53108447-4	chr4	53107947	53108947	+	943.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 6 of 49)	intron (NM_013454, intron 6 of 49)	51448.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-13370045-4	chr15	13369559	13370559	+	943.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-196384.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118546379-4	chr2	118545870	118546870	+	943.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331221, intron 2 of 3)	intron (NM_001331221, intron 2 of 3)	1229.0	NM_001331221	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	13.0	33.0	15.0	6.0	34.5	13.5
Merged-chr7-19239611-4	chr7	19239099	19240099	+	943.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207525, intron 1 of 1)	intron (NM_207525, intron 1 of 1)	11210.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-57404323-4	chr19	57403833	57404833	+	943.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43324.0	NM_145505	226252.0	Mm.358870	NM_145505	ENSMUSG00000033478	Fam160b1	AI450540|mKIAA1600	family with sequence similarity 160, member B1	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr14-56813711-4	chr14	56813197	56814197	+	943.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152252, exon 1 of 1)	non-coding (NR_152252, exon 1 of 1)	1708.0	NR_152252	100503842.0	Mm.297636	NR_152252	ENSMUSG00000100017	2410022M11Rik	-	RIKEN cDNA 2410022M11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167293012-4	chr2	167292507	167293507	+	943.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-52470.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84827674-2	chr2	84827164	84828164	+	943.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_013899, exon 2 of 3)	exon (NM_013899, exon 2 of 3)	643.0	NM_013899	30059.0	Mm.21826	NM_013899	ENSMUSG00000027076	Timm10	Tim13|Timm13a	translocase of inner mitochondrial membrane 10	protein-coding	17.5	1.5	10.0	10.5	9.5	5.5
Merged-chr3-152346840-2	chr3	152346340	152347340	+	943.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355666, intron 1 of 21)	CpG	362.0	NM_001076676	170822.0	Mm.258320	NM_133247	ENSMUSG00000025437	Usp33	9830169D19Rik|AA409780|Vdu1	ubiquitin specific peptidase 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16891111-2	chr7	16890611	16891611	+	943.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010320)	promoter-TSS (NM_010320)	-675.0	NM_010320	14709.0	Mm.103770	NM_010320	ENSMUSG00000063594	Gng8	G(y)8	guanine nucleotide binding protein (G protein), gamma 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163617661-2	chr2	163617161	163618161	+	943.833374	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131225, exon 4 of 4)	non-coding (NR_131225, exon 4 of 4)	10449.0	NM_001305803	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120016898-4	chr4	120016392	120017392	+	943.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-144314.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-94601533-4	chr15	94601033	94602033	+	943.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-11709.0	NM_008971	19230.0	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114979276-3	chr5	114978696	114979696	+	943.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-8134.0	NM_009327	21405.0	Mm.332607	NM_009327	ENSMUSG00000029556	Hnf1a	AI323641|HNF1|HNF1-alpha|HNF1[a]|Hnf-1|Hnf1alpha|LFB1|Tcf-1|Tcf1	HNF1 homeobox A	protein-coding	1.0	0.0	0.0	0.5	2.0	0.0
Merged-chr15-99032876-2	chr15	99032376	99033376	+	943.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_009448, intron 1 of 3)	intron (NM_009448, intron 1 of 3)	2985.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	1.5	4.0	9.5	1.5	13.0	4.5
Merged-chr2-34774245-15	chr2	34773606	34774606	+	943.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_022310, exon 5 of 8)	exon (NM_022310, exon 5 of 8)	2016.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116493976-4	chr11	116493476	116494476	+	943.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3630.0	NM_026364	67763.0	Mm.25125	NM_026364	ENSMUSG00000015869	Prpsap1	5730409F23Rik|PAP39	phosphoribosyl pyrophosphate synthetase-associated protein 1	protein-coding	1.0	0.0	0.0	0.5	1.5	3.0
Merged-chr7-90216122-4	chr7	90215615	90216615	+	943.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49317.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	12.5	19.0	14.5	2.0	1.5	2.0
Merged-chr19-10555785-4	chr19	10555297	10556297	+	943.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277861)	promoter-TSS (NM_001277861)	-34.0	NM_001277860	68642.0	Mm.31236	NM_026798	ENSMUSG00000024667	Tmem216	1110017C22Rik|2810441K11Rik|4921533J23Rik|A930021F15Rik|AI482550	transmembrane protein 216	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-15793727-4	chr6	15793193	15794193	+	943.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 4 of 4)	intron (NM_175088, intron 4 of 4)	73032.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-39910141-4	chr9	39909636	39910636	+	943.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_146613, exon 1 of 1)	exon (NM_146613, exon 1 of 1)	331.0	NM_146613	258606.0	Mm.377588	NM_146613	ENSMUSG00000095390	Olfr229	MOR171-14|Olfr229-ps1|Olfr973|Olfr973-ps1	olfactory receptor 229	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-18821581-4	chr15	18821079	18822079	+	943.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009865, intron 1 of 11)	intron (NM_009865, intron 1 of 11)	1250.0	NM_009865	320873.0	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115565205-4	chr5	115564796	115565796	+	943.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172719)	promoter-TSS (NM_172719)	33.0	NM_172719	231659.0	Mm.153014	NM_172719	ENSMUSG00000041638	Gcn1l1	4932409G22|AL022764|G431004K08Rik|GCN1L|Gcn1|mKIAA0219	GCN1 general control of amino-acid synthesis 1-like 1 (yeast)	protein-coding	7.0	14.5	9.5	2.5	2.0	3.5
Merged-chr9-20980002-4	chr9	20979499	20980499	+	943.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3206.0	NM_010333	14739.0	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-15880355-3	chr9	15879855	15880855	+	943.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5799.0	NM_145712	244701.0	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77624579-2	chr10	77624079	77625079	+	943.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_019803, intron 1 of 5)	MLT1C|LTR|ERVL-MaLR	2258.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96266389-4	chr10	96265900	96266900	+	943.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40193.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-66495886-4	chr8	66495382	66496382	+	943.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9352.0	NM_001357208	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65774074-4	chr3	65773585	65774585	+	943.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166659, intron 7 of 12)	intron (NM_001166659, intron 7 of 12)	107857.0	NM_001166659	624866.0	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-36994373-4	chr8	36993886	36994886	+	943.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001039220, exon 1 of 1)	exon (NM_001039220, exon 1 of 1)	811.0	NM_001039220	621080.0	Mm.373292	NM_001039220	ENSMUSG00000074384	AI429214	-	expressed sequence AI429214	protein-coding	66.5	97.5	82.0	36.0	139.5	116.0
Merged-chr1-88655321-4	chr1	88654828	88655828	+	943.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46863.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54028712-4	chr11	54028225	54029225	+	943.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330304)	promoter-TSS (NM_001330304)	-621.0	NM_001330304	30805.0	Mm.274590	NM_019687	ENSMUSG00000020334	Slc22a4	Octn1	solute carrier family 22 (organic cation transporter), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57231726-4	chr17	57231226	57232226	+	943.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3590.0	NM_009778	12266.0	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-13007148-4	chr17	13006637	13007637	+	943.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013671)	promoter-TSS (NM_013671)	-702.0	NM_013671	20656.0	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86886300-4	chr4	86885783	86886783	+	943.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290543, intron 2 of 5)	intron (NM_001290543, intron 2 of 5)	11869.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	15.5	5.5	7.5	5.0	10.0	4.5
Merged-chr14-70520488-4	chr14	70519986	70520986	+	943.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009755)	promoter-TSS (NM_009755)	186.0	NM_001360021	12153.0	Mm.27757	NM_009755	ENSMUSG00000022098	Bmp1	Pcp|Tld	bone morphogenetic protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-48516116-4	chr13	48515614	48516614	+	943.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2678.0	NM_001164576	67911.0	Mm.251375	NM_026450	ENSMUSG00000050954	Zfp169	1700025J14Rik|4930429A13Rik|BE688704	zinc finger protein 169	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148332781-3	chr5	148332278	148333278	+	943.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007513, intron 12 of 12)	intron (NM_007513, intron 12 of 12)	60037.0	NM_001301424	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23778482-3	chr13	23777986	23778986	+	943.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-4055.0	NM_001029935	214158.0	Mm.314151	NM_001029935	ENSMUSG00000064140	Trim38	Gm23	tripartite motif-containing 38	protein-coding	0.0	2.0	0.0	7.0	3.0	2.0
Merged-chr6-97509611-4	chr6	97509116	97510116	+	943.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-21796.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	12.5	31.0	16.5	9.5	28.5	14.5
Merged-chr8-83783327-4	chr8	83782803	83783803	+	943.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41992.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	1.5	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115508920-4	chr5	115508411	115509411	+	943.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	2235.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	24.5	39.5	44.0	32.0	76.5	55.0
Merged-chr5-21039534-4	chr5	21039020	21040020	+	943.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011203, intron 1 of 17)	CYRA11_Mm|Unknown|Y-chromosome	-4273.0	NM_001356590	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5101040-3	chr18	5100538	5101538	+	943.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347449, intron 22 of 30)	intron (NM_001347449, intron 22 of 30)	54449.0	NM_001347449	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139218603-6	chr4	139218048	139219048	+	943.694458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	24437.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	5.5	48.0	25.5	20.0	43.5	25.5
Merged-chr10-111770174-3	chr10	111769692	111770692	+	943.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	104184.0	NR_046029	629206.0	Mm.391444	NR_046029	ENSMUSG00000112533	Gm20758	-	predicted gene, 20758	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24602719-3	chr5	24602240	24603240	+	943.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025891)	promoter-TSS (NM_025891)	-738.0	NM_025891	66993.0	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-67723968-3	chr13	67723478	67724478	+	943.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145622, intron 1 of 3)	intron (NM_145622, intron 1 of 3)	5195.0	NM_145622	235907.0	Mm.440123	NM_145622	ENSMUSG00000071281	Zfp65	KRAB5|Zfp71-rs1|pz114	zinc finger protein 65	protein-coding	87.5	162.0	127.0	55.0	121.5	139.5
Merged-chr2-79349275-3	chr2	79348793	79349793	+	943.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001048176, intron 5 of 12)	L1_Mur3|LINE|L1	79695.0	NM_001048176	228094.0	Mm.440704	NM_001033295	ENSMUSG00000075256	Cerkl	Gm1958|Rp26	ceramide kinase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-93266322-4	chr5	93265832	93266832	+	943.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1241.0	NM_007635	12452.0	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	57.0	238.0	137.0	64.0	227.0	124.0
Merged-chr11-120355179-4	chr11	120354682	120355682	+	943.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-6352.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35901949-4	chr16	35901460	35902460	+	943.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-30578.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32466613-3	chr9	32466151	32467151	+	943.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 2 of 8)	intron (NM_008026, intron 2 of 8)	72666.0	NM_001168354	56379.0	Mm.390168	NM_019659	ENSMUSG00000041248	Kcnj1	Kir1.1|ROMK|Romk2	potassium inwardly-rectifying channel, subfamily J, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100451335-4	chr13	100450812	100451812	+	943.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008670, intron 1 of 15)	ID_B1|SINE|B4	1552.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9466433-3	chr3	9465937	9466937	+	943.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133218, intron 4 of 8)	intron (NM_133218, intron 4 of 8)	63359.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	1.0	0.0	1.5	0.0	3.0	0.0
Merged-chr14-54412982-2	chr14	54412482	54413482	+	943.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253679, intron 2 of 10)	intron (NM_001253679, intron 2 of 10)	-3510.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	1.5	3.0	6.0	0.0	3.0	1.5
Merged-chr9-59487620-2	chr9	59487120	59488120	+	943.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1246.0	NM_019927	23806.0	Mm.305925	NM_019927	ENSMUSG00000025234	Arih1	AU021774|Ari|Ari1|Hari|Hhari|Ubch7bp|Uip77	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-125063916-2	chr4	125063416	125064416	+	943.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175223, intron 2 of 5)	intron (NM_175223, intron 2 of 5)	1741.0	NM_175223	75563.0	Mm.50304	NM_175223	ENSMUSG00000042707	Dnali1	1700023A09Rik|AW049135	dynein, axonemal, light intermediate polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53196520-4	chr15	53196013	53197013	+	943.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	149670.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79853447-6	chr10	79852815	79853815	+	943.6555789999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_029447, exon 1 of 1)	non-coding (NR_029447, exon 1 of 1)	-1117.0	NM_001077363	19205.0	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-22091304-4	chr3	22090804	22091804	+	943.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	14652.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-24357534-3	chr11	24357012	24358012	+	943.64447	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124397.0	NR_045857	71316.0	Mm.79162	NR_045857	ENSMUSG00000086892	4933430M04Rik	-	RIKEN cDNA 4933430M04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11709559-4	chr16	11709058	11710058	+	943.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 18 of 20)	intron (NM_028964, intron 18 of 20)	-70144.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-86583894-4	chr9	86583386	86584386	+	943.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008615, intron 13 of 13)	intron (NM_008615, intron 13 of 13)	11833.0	NM_027100	69519.0	Mm.272517	NM_027100	ENSMUSG00000032417	Rwdd2a	1700030C20Rik|AI848608|Rwdd2	RWD domain containing 2A	protein-coding	2.0	0.0	1.0	4.0	0.0	0.0
Merged-chr7-43562893-4	chr7	43562394	43563394	+	943.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008549, intron 1 of 4)	intron (NM_001008549, intron 1 of 4)	524.0	NM_001008549	210104.0	Mm.333821	NM_001008549	ENSMUSG00000056592	Zfp658	-	zinc finger protein 658	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107231806-4	chr9	107231307	107232307	+	943.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_153413, exon 1 of 53)	5' UTR (NM_153413, exon 1 of 53)	102.0	NM_153413	208869.0	Mm.150259	NM_153413	ENSMUSG00000039716	Dock3	MOCA|PBP|mKIAA0299	dedicator of cyto-kinesis 3	protein-coding	0.0	12.5	0.0	0.0	0.0	0.0
Merged-chr11-100725091-4	chr11	100724598	100725598	+	943.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305003, intron 1 of 5)	intron (NM_001305003, intron 1 of 5)	11248.0	NM_029307	75482.0	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-137420690-4	chr7	137420143	137421143	+	943.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-9887.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70700799-4	chr11	70700318	70701318	+	943.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252485)	promoter-TSS (NM_001252485)	270.0	NM_153103	16562.0	Mm.99996	NM_153103	ENSMUSG00000020821	Kif1c	B430105J22Rik|D11Bwg1349e|Ltxs1|Orch3	kinesin family member 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34885000-4	chr18	34884460	34885460	+	943.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23753.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131931017-4	chr1	131930500	131931500	+	943.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145804, intron 6 of 6)	intron (NM_001145804, intron 6 of 6)	20542.0	NM_175294	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70131698-4	chr8	70131180	70132180	+	943.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011266, exon 9 of 9)	3' UTR (NM_011266, exon 9 of 9)	353.0	NM_001025587	75692.0	Mm.161167	NM_001025586	ENSMUSG00000071078	Nr2c2ap	2310073E15Rik	nuclear receptor 2C2-associated protein	protein-coding	62.0	161.0	102.0	42.0	98.0	63.5
Merged-chr3-157576137-3	chr3	157575635	157576635	+	943.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359745, intron 1 of 3)	intron (NM_001359745, intron 1 of 3)	9243.0	NM_011196	19218.0	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	1.0	0.0	1.0	1.5	1.5	1.5
Merged-chr15-95810689-4	chr15	95810190	95811190	+	943.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	19382.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-13008900-4	chr17	13008401	13009401	+	943.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013671, intron 2 of 4)	intron (NM_013671, intron 2 of 4)	1062.0	NM_013671	20656.0	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85595326-1	chr1	85594826	85595826	+	943.599976	f1_balb.idr	intron (NM_030194, intron 2 of 11)	intron (NM_030194, intron 2 of 11)	3484.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152541835-4	chr1	152541206	152542206	+	943.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 9 of 17)	B1F|SINE|Alu	83511.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95679006-4	chr10	95678522	95679522	+	943.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-114876.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163987656-4	chr2	163987173	163988173	+	943.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCb|LINE|L1	-7524.0	NM_018753	54401.0	Mm.34319	NM_018753	ENSMUSG00000018326	Ywhab	1300003C17Rik|14-3-3b	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	protein-coding	0.0	0.0	2.0	0.0	0.0	1.0
Merged-chr10-96875903-4	chr10	96875404	96876404	+	943.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-159864.0	NR_045358	75301.0	Mm.108650	NR_045358	ENSMUSG00000111924	4930556N09Rik	-	RIKEN cDNA 4930556N09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30579991-3	chr14	30579480	30580480	+	943.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7831.0	NR_037237	100526475.0		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	160.5	414.0	295.0	63.0	123.0	95.0
Merged-chr15-77836316-3	chr15	77835829	77836829	+	943.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	5846.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-167342029-4	chr1	167341508	167342508	+	943.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7983.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71020011-4	chr2	71019510	71020510	+	943.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 1 of 9)	intron (NM_145524, intron 1 of 9)	-1636.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20893564-4	chr10	20893085	20894085	+	943.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58962.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	23.5	36.0	20.0	16.5	26.0	8.5
Merged-chr10-25434592-4	chr10	25434094	25435094	+	943.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013511, intron 1 of 19)	intron (NM_013511, intron 1 of 19)	26226.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106389861-4	chr1	106389367	106390367	+	943.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133821, exon 16 of 17)	exon (NM_133821, exon 16 of 17)	156764.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0.0	0.5	1.5	4.5	0.5	1.5
Merged-chr11-44526861-4	chr11	44526358	44527358	+	943.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 2 of 5)	intron (NM_001166553, intron 2 of 5)	7481.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32821542-2	chr12	32821085	32822085	+	943.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021524, intron 1 of 10)	intron (NM_021524, intron 1 of 10)	1250.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	160.0	451.0	223.0	115.0	409.5	256.5
Merged-chr8-120071989-2	chr8	120071489	120072489	+	943.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29483.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-13272978-4	chr2	13272473	13273473	+	943.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1558.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81863889-2	chr7	81863389	81864389	+	943.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291282, intron 2 of 9)	intron (NM_001291282, intron 2 of 9)	1202.0	NM_001291282	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	15.0	45.0	27.0	19.0	34.5	25.0
Merged-chr17-88115031-2	chr17	88114531	88115531	+	943.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-10481.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126086367-4	chr7	126085881	126086881	+	943.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3970.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	0.5	2.5	5.0	1.0	1.5	3.5
Merged-chr11-109298184-4	chr11	109297655	109298655	+	943.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011268)	promoter-TSS (NM_011268)	26.0	NM_001165934	19739.0	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr12-113143818-2	chr12	113143318	113144318	+	943.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024223, intron 2 of 6)	intron (NM_024223, intron 2 of 6)	3213.0	NM_001347443	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161894298-3	chr1	161893803	161894803	+	943.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17621.0	NM_001357402	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	19.0	71.5	33.5	19.5	51.5	39.5
Merged-chr6-38805822-3	chr6	38805311	38806311	+	943.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 2 of 14)	intron (NM_010433, intron 2 of 14)	31500.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27693907-3	chr2	27693344	27694344	+	943.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-15448.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32818852-2	chr12	32818329	32819329	+	943.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1506.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	6.5	50.5	26.5	14.5	45.5	21.5
Merged-chr2-160365658-4	chr2	160365116	160366116	+	943.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010658, exon 1 of 1)	3' UTR (NM_010658, exon 1 of 1)	1449.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	19.5	34.0	16.5	16.5	31.5	18.5
Merged-chr10-19850881-3	chr10	19850388	19851388	+	943.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029529, exon 1 of 2)	exon (NM_029529, exon 1 of 2)	571.0	NM_029529	76157.0	Mm.74324	NM_029529	ENSMUSG00000050473	Slc35d3	6230421J19Rik|Frcl1	solute carrier family 35, member D3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43894279-4	chr5	43893804	43894804	+	943.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	25495.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	2.5	2.0	1.5	5.5	8.5	2.5
Merged-chr8-94212813-2	chr8	94212313	94213313	+	943.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-1751.0	NM_001357266	71805.0	Mm.458170	NM_172410	ENSMUSG00000032939	Nup93	2410008G02Rik	nucleoporin 93	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80025893-4	chr15	80025379	80026379	+	943.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11071.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	9.0	19.5	9.0	15.0	40.5	16.5
Merged-chr11-30885428-2	chr11	30884928	30885928	+	943.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175490)	promoter-TSS (NM_175490)	70.0	NM_175490	237716.0	Mm.338361	NM_175490	ENSMUSG00000043999	Gpr75	-	G protein-coupled receptor 75	protein-coding	0.0	0.0	7.5	5.0	1.0	10.5
Merged-chr3-51170419-4	chr3	51169924	51170924	+	943.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54023.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85974221-4	chr12	85973706	85974706	+	943.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	MLT1F|LTR|ERVL-MaLR	104835.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158117034-2	chr2	158116534	158117534	+	943.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009373, exon 13 of 13)	3' UTR (NM_009373, exon 13 of 13)	-25237.0	NR_040609	72340.0	Mm.443395	NR_040609	ENSMUSG00000100860	2010009K17Rik	-	RIKEN cDNA 2010009K17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73424435-2	chr15	73423935	73424935	+	943.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1244.0	NM_001358045	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-37957033-2	chr18	37956533	37957533	+	943.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175684)	TTS (NM_175684)	1474.0	NM_153793	225392.0	Mm.233516	NM_153793	ENSMUSG00000044024	Rell2	4631403P03Rik|ependolin	RELT-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133185433-4	chr4	133184942	133185942	+	943.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 3 of 8)	intron (NM_153423, intron 3 of 8)	-10213.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	34.0	44.0	27.5	27.0	51.0	19.5
Merged-chr10-20398407-4	chr10	20397894	20398894	+	943.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013875, exon 13 of 13)	3' UTR (NM_013875, exon 13 of 13)	50575.0	NM_027930	71804.0	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110625880-7	chr7	110625379	110626379	+	943.4761960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1778.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81519759-4	chr10	81519245	81520245	+	943.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010304, intron 1 of 6)	intron (NM_010304, intron 1 of 6)	4480.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-70091950-4	chr2	70091440	70092440	+	943.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177376, intron 2 of 34)	RLTR14|LTR|ERV1	52814.0	NM_177376	329421.0	Mm.99648	NM_177376	ENSMUSG00000042064	Myo3b	A430065P19Rik	myosin IIIB	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165193468-4	chr1	165192921	165193921	+	943.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151711, intron 1 of 6)	intron (NR_151711, intron 1 of 6)	1012.0	NM_145512	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19270825-4	chr7	19270343	19271343	+	943.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009499, intron 1 of 12)	intron (NM_009499, intron 1 of 12)	1011.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	19.5	46.0	43.0	35.0	64.0	27.5
Merged-chr5-113647929-3	chr5	113647468	113648468	+	943.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	B4|SINE|B4	2422.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	27.5	72.5	43.5	39.0	43.0	48.0
Merged-chr9-59760746-4	chr9	59760263	59761263	+	943.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173018, intron 1 of 43)	intron (NM_173018, intron 1 of 43)	9589.0	NM_173018	270163.0	Mm.249545	NM_173018	ENSMUSG00000039585	Myo9a	4732465J09Rik|C130068I12Rik|C230003M11	myosin IXa	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107102058-4	chr3	107101662	107102662	+	943.435425	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008417, intron 1 of 2)	CpG	595.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	1.5	19.0	24.5	3.0	23.0	18.5
Merged-chr2-76114957-4	chr2	76114464	76115464	+	943.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081033, intron 9 of 19)	intron (NM_001081033, intron 9 of 19)	-132997.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	0.0	0.0	3.5	0.0	0.0	2.0
Merged-chr5-76905023-4	chr5	76904530	76905530	+	943.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173765, intron 1 of 15)	RSINE1|SINE|B4	484.0	NM_173765	231326.0	Mm.39271	NM_173765	ENSMUSG00000055923	Aasdh	A230062G08Rik|A830035E16|Acsf4|U26	aminoadipate-semialdehyde dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122735393-6	chr10	122734819	122735819	+	943.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	56004.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-44029821-4	chr17	44029330	44030330	+	943.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357742, intron 4 of 4)	intron (NM_001357742, intron 4 of 4)	-48972.0	NM_001168620	83965.0	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	10.5	7.5	4.0	14.5	7.5	8.5
Merged-chr11-86356342-4	chr11	86355835	86356835	+	943.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080931, intron 1 of 29)	intron (NM_001080931, intron 1 of 29)	1190.0	NM_001080931	327987.0	Mm.341886	NM_001080931	ENSMUSG00000034297	Med13	1110067M05Rik|D030023K18|Thrap1|Trap240	mediator complex subunit 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70846411-4	chr17	70845905	70846905	+	943.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001164077, exon 1 of 2)	5' UTR (NM_001164077, exon 1 of 2)	372.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-140846969-4	chr2	140846478	140847478	+	943.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 4 of 18)	intron (NM_001013802, intron 4 of 18)	-175502.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95967267-2	chr4	95966767	95967767	+	943.400024	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030014)	promoter-TSS (NM_030014)	-112.0	NM_030014	77963.0	Mm.49994	NM_030014	ENSMUSG00000028572	Hook1	A930033L17Rik|azh	hook microtubule tethering protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4962128-5	chr19	4961700	4962700	+	943.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025553)	promoter-TSS (NM_025553)	-106.0	NM_025553	66419.0	Mm.28494	NM_025553	ENSMUSG00000024902	Mrpl11	2410001P07Rik|L11mt	mitochondrial ribosomal protein L11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110448736-7	chr11	110448255	110449255	+	943.3952640000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	-29760.0	NM_001356347	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-34449546-4	chr12	34449032	34450032	+	943.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 4 of 27)	intron (NM_001271386, intron 4 of 27)	79357.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-115900920-4	chr13	115900429	115901429	+	943.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	408759.0	NM_021459	16392.0	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	37.5	37.0	51.5	46.5	73.5	69.5
Merged-chr8-106959757-4	chr8	106959264	106960264	+	943.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009229, intron 1 of 6)	MTC|LTR|ERVL-MaLR	24014.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-75415175-4	chr12	75414675	75415675	+	943.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175644, intron 2 of 2)	intron (NM_175644, intron 2 of 2)	1606.0	NM_175644	217674.0	Mm.252250	NM_175644	ENSMUSG00000048982	Gphb5	OGH|Zlut1	glycoprotein hormone beta 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17681039-2	chr12	17680539	17681539	+	943.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9770.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	6.0	24.5	4.5	6.5	6.0	10.0
Merged-chr15-98477888-3	chr15	98477401	98478401	+	943.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4782.0	NM_010679	16770.0	Mm.5074	NM_010679	ENSMUSG00000022991	Lalba	AW208827|Lyzg	lactalbumin, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53157445-4	chr4	53156942	53157942	+	943.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	2453.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-67847328-3	chr9	67846863	67847863	+	943.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177184, intron 1 of 84)	intron (NM_177184, intron 1 of 84)	6967.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-61688477-4	chr3	61687975	61688975	+	943.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	323968.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-71017105-3	chr12	71016620	71017620	+	943.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081195, exon 2 of 24)	5' UTR (NM_001081195, exon 2 of 24)	1153.0	NM_001081195	238247.0	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50803639-3	chr15	50803139	50804139	+	943.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	85410.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-107609819-4	chr7	107609310	107610310	+	943.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163557, intron 1 of 25)	intron (NM_001163557, intron 1 of 25)	2966.0	NM_001163557	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127273267-3	chr7	127272741	127273741	+	943.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009266, exon 1 of 1)	exon (NM_009266, exon 1 of 1)	818.0	NM_009266	20768.0	Mm.20294	NM_009266	ENSMUSG00000049091	Sephs2	Sps2|Ysg3	selenophosphate synthetase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87632436-3	chr1	87631983	87632983	+	943.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 1 of 26)	B1F|SINE|Alu	12171.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-58271536-4	chr14	58271028	58272028	+	943.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	198842.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115568571-4	chr8	115568062	115569062	+	943.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	138332.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117201713-3	chr8	117201223	117202223	+	943.285706	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081151, intron 9 of 10)	ID_B1|SINE|B4	43588.0	NM_001081151	209239.0	Mm.132992	NM_001081151	ENSMUSG00000052557	Gan	A330045G18|gigaxonin	giant axonal neuropathy	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-24709477-4	chr18	24708996	24709996	+	943.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175276, exon 1 of 27)	5' UTR (NM_175276, exon 1 of 27)	873.0	NM_001289655	225288.0	Mm.329322	NM_175276	ENSMUSG00000034295	Fhod3	A930009H06Rik|FHOS2|mKIAA1695	formin homology 2 domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125178652-3	chr5	125178163	125179163	+	943.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253905, intron 1 of 42)	CpG	551.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-51551665-6	chr6	51551092	51552092	+	943.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361577, intron 1 of 6)	MTC|LTR|ERVL-MaLR	6299.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55762561-6	chr14	55761972	55762972	+	943.263916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020490, exon 2 of 2)	exon (NM_020490, exon 2 of 2)	1044.0	NM_020490	57260.0	Mm.159670	NM_020490	ENSMUSG00000040432	Ltb4r2	5830462O07Rik|BLT2|LTB4-R 2|LTB4-R-2|LTB4-R2	leukotriene B4 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-193859001-4	chr1	193858499	193859499	+	943.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-351469.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119357082-2	chr2	119356568	119357568	+	943.25	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	5826.0	NM_026929	69065.0	Mm.35083	NM_026929	ENSMUSG00000027313	Chac1	1810008K03Rik	ChaC, cation transport regulator 1	protein-coding	1.0	1.0	0.0	1.0	19.0	2.0
Merged-chr4-88862781-4	chr4	88862271	88863271	+	943.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	12684.0	NM_010502	15962.0	Mm.57127	NM_010502	ENSMUSG00000095498	Ifna1	Ifa1	interferon alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127792362-4	chr3	127791859	127792859	+	943.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356430, intron 2 of 2)	intron (NM_001356430, intron 2 of 2)	1702.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	83.0	242.0	145.0	68.0	237.5	191.0
Merged-chr15-102355548-2	chr15	102355048	102356048	+	943.25	f1_balb.idr|f1_c57bl6.idr	TTS (NR_155425)	TTS (NR_155425)	4721.0	NR_155425	102640093.0	Mm.385825	NR_155425	ENSMUSG00000116402	Gm36246	-	predicted gene, 36246	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-33673375-4	chr8	33672844	33673844	+	943.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010344, intron 4 of 12)	intron (NM_010344, intron 4 of 12)	20106.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	201.5	404.0	316.5	25.0	71.0	56.0
Merged-chr6-88057039-3	chr6	88056544	88057544	+	943.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11774.0	NM_009005	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75259273-4	chr18	75258778	75259778	+	943.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027727, intron 16 of 16)	intron (NM_027727, intron 16 of 16)	38039.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	3.0	4.0	16.5	9.0	9.0	19.5
Merged-chr9-66514344-2	chr9	66513844	66514844	+	943.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001302116)	TTS (NM_001302116)	249.0	NM_175206	74165.0	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87387237-4	chr17	87386731	87387731	+	943.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40510.0	NM_029298	75467.0	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	0.0	0.0	0.0	1.5	0.0	0.0
Merged-chr19-18616750-2	chr19	18616145	18617145	+	943.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	15168.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	24.0	35.0	27.5	15.5	30.5	32.0
Merged-chr3-9881090-4	chr3	9880623	9881623	+	943.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-47444.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	17.5	15.5	20.0	2.0	2.0	0.5
Merged-chr5-125395208-2	chr5	125394708	125395708	+	943.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5191.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62924862-2	chr11	62924369	62925369	+	943.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26324.0	NM_025496	66338.0	Mm.46166	NM_025496	ENSMUSG00000042200	Cdrt4	1700019I23Rik	CMT1A duplicated region transcript 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96400925-4	chr11	96400421	96401421	+	943.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35163.0	NM_008266	15407.0	Mm.890	NM_008266	ENSMUSG00000018973	Hoxb1	Hox-2.9	homeobox B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87758625-11	chr11	87757982	87758982	+	943.242432	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1527.0	NR_106176	102466883.0		NR_106176	ENSMUSG00000065420	Mir142b	Gm27750|mmu-mir-142b	microRNA 142b	ncRNA	22.0	29.5	16.5	11.0	42.0	14.0
Merged-chr12-73658647-4	chr12	73658150	73659150	+	943.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	Charlie1a|DNA|hAT-Charlie	73854.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-76384644-5	chr13	76384055	76385055	+	943.209534	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030174)	promoter-TSS (NM_030174)	-406.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	11.0	0.0	2.0	4.5	4.0	1.0
Merged-chr11-51935252-4	chr11	51934745	51935745	+	943.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-32386.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9645475-4	chr4	9644901	9645901	+	943.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	MTC|LTR|ERVL-MaLR	-1684.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	2.0	0.5	6.5	1.5	9.5	4.5
Merged-chr16-17804700-4	chr16	17804166	17805166	+	943.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153790, intron 8 of 10)	intron (NM_153790, intron 8 of 10)	7384.0	NM_153790	224024.0	Mm.194950	NM_153790	ENSMUSG00000012017	Scarf2	NSR1|SREC-II|SRECRP-1|Scatf1|Srec2|SrecII	scavenger receptor class F, member 2	protein-coding	0.0	0.0	0.0	2.0	1.0	1.0
Merged-chr12-100505631-4	chr12	100505123	100506123	+	943.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 1 of 19)	intron (NM_001033213, intron 1 of 19)	15199.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108309228-5	chr9	108308837	108309837	+	943.2000119999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313961, intron 1 of 5)	intron (NM_001313961, intron 1 of 5)	2540.0	NM_001313962	11848.0	Mm.757	NM_016802	ENSMUSG00000007815	Rhoa	Arha|Arha1|Arha2	ras homolog family member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30767077-4	chr13	30766584	30767584	+	943.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013674)	TTS (NM_013674)	17851.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118042845-3	chr10	118042344	118043344	+	943.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-98943.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	7.5	0.0	1.0	12.0	4.5	16.0
Merged-chr10-84209679-4	chr10	84209199	84210199	+	943.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	-109002.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101060708-4	chr7	101060228	101061228	+	943.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-48047.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	7.0	1.5	3.0	12.0	14.5	10.0
Merged-chr14-74646330-3	chr14	74645840	74646840	+	943.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172812, intron 2 of 2)	intron (NM_172812, intron 2 of 2)	5466.0	NM_172812	15558.0	Mm.214351	NM_172812	ENSMUSG00000034997	Htr2a	5-HT-2|5-HT-2A|E030013E04|Htr-2|Htr2	5-hydroxytryptamine (serotonin) receptor 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31114451-3	chr6	31114001	31115001	+	943.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-51408.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-27366223-3	chr10	27365728	27366728	+	943.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008481, intron 5 of 63)	intron (NM_008481, intron 5 of 63)	-23638.0	NR_131034	75855.0	Mm.402080	NR_131034	ENSMUSG00000101636	4930579H20Rik	-	RIKEN cDNA 4930579H20 gene	ncRNA	6.5	3.5	2.0	10.5	5.5	18.5
Merged-chr6-16855244-3	chr6	16854751	16855751	+	943.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 2 of 6)	intron (NM_031198, intron 2 of 6)	43190.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83830736-4	chr17	83830234	83831234	+	943.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025325)	TTS (NM_025325)	16056.0	NM_025325	107766.0	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-75738643-3	chr12	75738153	75739153	+	943.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2924.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24674423-4	chr5	24673915	24674915	+	943.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	-11400.0	NM_016736	53312.0	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45706078-4	chr7	45705579	45706579	+	943.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016974, intron 1 of 3)	intron (NM_016974, intron 1 of 3)	832.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161170824-4	chr1	161170304	161171304	+	943.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028664)	TTS (NM_028664)	-11490.0	NM_001195189	100502590.0	Mm.449990	NM_001195189	ENSMUSG00000049160	Tex50	4930469G21Rik	testis expressed 50	protein-coding	2.5	1.5	1.0	1.5	7.5	0.5
Merged-chr13-63176185-2	chr13	63175685	63176685	+	943.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 7 of 15)	intron (NM_001289926, intron 7 of 15)	-63844.0	NR_110520	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	6.0	0.0	2.5	6.0	0.0	2.5
Merged-chr4-136895754-6	chr4	136895196	136896196	+	943.1527710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007572)	TTS (NM_007572)	-2782.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	34.0	50.5	20.5	37.0	61.5	43.0
Merged-chr12-35132967-4	chr12	35132484	35133484	+	943.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014973, intron 21 of 25)	intron (NM_001014973, intron 21 of 25)	61913.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	75.0	132.0	92.5	53.0	157.5	97.0
Merged-chr1-86437592-4	chr1	86437063	86438063	+	943.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11234.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-83740694-3	chr18	83740203	83741203	+	943.133301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	345859.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-123465815-4	chr7	123465322	123466322	+	943.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007474, intron 4 of 5)	intron (NM_007474, intron 4 of 5)	3528.0	NM_001109045	11833.0	Mm.273175	NM_007474	ENSMUSG00000030762	Aqp8	AI255744|AQP-8	aquaporin 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21286296-4	chr16	21285855	21286855	+	943.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046162, intron 1 of 4)	intron (NR_046162, intron 1 of 4)	10517.0	NR_046162	328646.0	Mm.404748	NR_046162	ENSMUSG00000096918	Gm16863	A830060N17	predicted gene, 16863	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57632055-4	chr10	57631580	57632580	+	943.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008863)	promoter-TSS (NM_008863)	99.0	NM_001039051	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148509402-4	chr5	148508922	148509922	+	943.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 4 of 6)	intron (NM_001359199, intron 4 of 6)	42251.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0.0	0.0	2.5	1.0	0.5	1.5
Merged-chr9-59585006-4	chr9	59584492	59585492	+	943.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175235, intron 2 of 11)	intron (NM_175235, intron 2 of 11)	-4296.0	NM_001361099	76183.0	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87526437-4	chr3	87525950	87526950	+	943.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286844, intron 1 of 4)	intron (NM_001286844, intron 1 of 4)	872.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	18.5	17.0	14.5	14.0	35.0	28.5
Merged-chr1-193852889-4	chr1	193852392	193853392	+	943.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-345362.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80807551-4	chr12	80807064	80808064	+	943.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	17032.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113493193-4	chr13	113492694	113493694	+	943.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 1 of 6)	intron (NR_045501, intron 1 of 6)	9650.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38472969-3	chr2	38472495	38473495	+	943.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38702.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84148015-4	chr1	84147498	84148498	+	943.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003948, intron 2 of 2)	intron (NM_001003948, intron 2 of 2)	70963.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-47691778-5	chr8	47691226	47692226	+	943.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-16567.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29487549-5	chr19	29487033	29488033	+	943.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34454.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80570916-6	chr10	80570279	80571279	+	943.086121	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_078477, intron 1 of 1)	intron (NM_078477, intron 1 of 1)	6517.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100048356-4	chr15	100047851	100048851	+	943.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	9687.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91715220-4	chr6	91714715	91715715	+	943.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	31148.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-26317231-4	chr13	26316722	26317722	+	943.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-4816.0	NR_045933	73576.0	Mm.45473	NR_045933	ENSMUSG00000084811	1700092E19Rik	-	RIKEN cDNA 1700092E19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-19629043-4	chr2	19628546	19629546	+	943.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28851.0	NR_033642	100041244.0	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34332918-4	chr13	34332440	34333440	+	943.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 1 of 10)	intron (NM_001033167, intron 1 of 10)	12242.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98359518-3	chr11	98359021	98360021	+	943.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021547, intron 1 of 14)	intron (NM_021547, intron 1 of 14)	1153.0	NM_021547	59045.0	Mm.265546	NM_021547	ENSMUSG00000018167	Stard3	Mln64|es64	START domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-5060356-4	chr7	5059873	5060873	+	943.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290432, exon 6 of 6)	exon (NM_001290432, exon 6 of 6)	-1770.0	NM_133671	22185.0	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	17.0	37.0	26.0	12.5	29.0	21.0
Merged-chr6-87547606-4	chr6	87547132	87548132	+	943.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14373.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	1.5	3.5	1.0	3.0	0.0	1.0
Merged-chr2-148048551-6	chr2	148048118	148049118	+	943.0595089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1649.0	NM_010446	15376.0	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	2.0	1.0	11.5	0.0	4.0	4.0
Merged-chr10-93564811-3	chr10	93564319	93565319	+	943.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359749, intron 4 of 13)	intron (NM_001359749, intron 4 of 13)	9938.0	NM_001359749	237465.0	Mm.477086	NM_175488	ENSMUSG00000036168	Ccdc38	4933417K05Rik	coiled-coil domain containing 38	protein-coding	28.0	6.5	2.5	11.0	1.5	1.0
Merged-chr11-54628526-4	chr11	54628047	54629047	+	943.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 11 of 28)	intron (NM_001252494, intron 11 of 28)	32401.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80663770-4	chr10	80663272	80664272	+	943.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6701.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65863502-4	chr3	65863023	65864023	+	943.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94726.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0.0	0.0	0.0	0.0	0.0	5.5
Merged-chr3-108151493-4	chr3	108151010	108152010	+	943.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001305461, exon 2 of 3)	5' UTR (NM_001305461, exon 2 of 3)	3422.0	NM_001305461	229714.0	Mm.73666	NM_175470	ENSMUSG00000046793	Gpr61	-	G protein-coupled receptor 61	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19023555-4	chr7	19023031	19024031	+	943.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026605)	promoter-TSS (NM_026605)	8.0	NM_008260	15377.0	Mm.42260	NM_008260	ENSMUSG00000040891	Foxa3	Hnf-3g|Hnf3g|Tcf-3g|Tcf3g	forkhead box A3	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr4-120950786-2	chr4	120950269	120951269	+	943.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005788, intron 1 of 5)	intron (NM_001005788, intron 1 of 5)	932.0	NM_001005788	381549.0	Mm.331840	NM_001005788	ENSMUSG00000064141	Zfp69	Gm1029|Krab2|Zfp63	zinc finger protein 69	protein-coding	7.0	69.5	50.5	26.5	69.0	62.5
Merged-chr11-85840818-2	chr11	85840318	85841318	+	943.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009324, exon 7 of 7)	exon (NM_009324, exon 7 of 7)	8203.0	NM_009324	21385.0	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98871505-7	chr15	98871020	98872020	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033276)	promoter-TSS (NM_001033276)	-315.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-145211322-1	chr5	145210822	145211822	+	943.0	f1_c57bl6.idr	intron (NM_001359192, intron 2 of 3)	intron (NM_001359192, intron 2 of 3)	6763.0	NM_001359188	22757.0	Mm.332842	NM_016683	ENSMUSG00000055991	Zkscan5	AI132486|AI326970|Zfp95|hKraba1	zinc finger with KRAB and SCAN domains 5	protein-coding	0.0	4.5	0.0	0.0	1.5	0.0
Merged-chr10-40476734-4	chr10	40476230	40477230	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198164, intron 9 of 11)	intron (NM_198164, intron 9 of 11)	-93632.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100662772-2	chr5	100662272	100663272	+	943.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027978, intron 3 of 6)	intron (NM_027978, intron 3 of 6)	11484.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	16.5	39.0	27.5	20.5	23.5	23.0
Merged-chr9-78471221-2	chr9	78470717	78471717	+	943.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026658, intron 11 of 11)	B2_Mm1a|SINE|B2	10507.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152286725-2	chr4	152286225	152287225	+	943.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008237, exon 5 of 5)	3' UTR (NM_008237, exon 5 of 5)	4937.0	NM_008237	15207.0	Mm.3516	NM_008237	ENSMUSG00000028946	Hes3	Hes-3|bHLHb43	hes family bHLH transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-103347165-1	chr12	103346665	103347665	+	943.0	f0_c57.idr	intron (NM_023049, intron 1 of 9)	intron (NM_023049, intron 1 of 9)	8836.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79180368-2	chr3	79179868	79180868	+	943.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32551.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	7.5	16.5	16.5	5.0	7.5	0.5
Merged-chr6-68768794-2	chr6	68768294	68769294	+	943.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	558380.0	NR_004434	19783.0		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79640749-2	chr8	79640249	79641249	+	943.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081164, intron 1 of 20)	intron (NM_001081164, intron 1 of 20)	1073.0	NM_001081164	73945.0	Mm.34348	NM_001081164	ENSMUSG00000036990	Otud4	4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046	OTU domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115602103-2	chr11	115601603	115602603	+	943.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173048, intron 1 of 16)	intron (NM_173048, intron 1 of 16)	1813.0	NM_001252067	260302.0	Mm.119479	NM_173048	ENSMUSG00000020740	Gga3	C230037M19Rik|mKIAA0154	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding	15.5	7.5	16.0	25.0	25.0	29.5
Merged-chr7-45588924-2	chr7	45588424	45589424	+	943.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243052, intron 10 of 10)	intron (NM_001243052, intron 10 of 10)	-13748.0	NR_038165	71661.0	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35183409-3	chr2	35182903	35183903	+	943.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026697, exon 7 of 8)	exon (NM_026697, exon 7 of 8)	17717.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40730887-3	chr9	40730359	40731359	+	943.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	44895.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	0.0	0.0	4.5	23.5	9.0	28.0
Merged-chr7-42505176-2	chr7	42504676	42505676	+	943.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001309388, intron 1 of 6)	intron (NM_001309388, intron 1 of 6)	577.0	NM_001309389	434178.0	Mm.333810	NM_001309388	ENSMUSG00000092416	Zfp141	-	zinc finger protein 141	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23517224-4	chr13	23516723	23517723	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Gly-GGY|tRNA|tRNA	-13821.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38285059-2	chr15	38284559	38285559	+	943.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14841.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145268455-2	chr4	145267955	145268955	+	943.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009401)	TTS (NM_009401)	-21585.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64684301-2	chr17	64683801	64684801	+	943.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 12 of 21)	intron (NM_008549, intron 12 of 21)	82652.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87495163-1	chr16	87494663	87495663	+	943.0	f0_balb.idr	promoter-TSS (NR_040375)	promoter-TSS (NR_040375)	706.0	NM_009840	12469.0	Mm.328673	NM_009840	ENSMUSG00000025613	Cct8	AI132397|Cctq|Tcpq	chaperonin containing Tcp1, subunit 8 (theta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-45921147-2	chr1	45920647	45921647	+	943.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016917, intron 3 of 7)	intron (NM_016917, intron 3 of 7)	4447.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27306911-3	chr2	27306412	27307412	+	943.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 3 of 29)	L1MD|LINE|L1	-59609.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173809482-4	chr1	173808988	173809988	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-42569.0	NM_008329	15951.0	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	11.5	23.0	12.5	3.0	31.0	21.0
Merged-chr11-118463100-2	chr11	118462600	118463600	+	943.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8105.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141871638-4	chr4	141871158	141872158	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025994, intron 1 of 3)	MIR3|SINE|MIR	3262.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	137.0	506.5	346.0	176.0	449.5	335.0
Merged-chr17-28750787-4	chr17	28750285	28751285	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-18532.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119355923-2	chr11	119355435	119356435	+	943.0	f0_c57.idr|f1_balb.idr	promoter-TSS (NM_018822)	promoter-TSS (NM_018822)	378.0	NM_178743	268512.0	Mm.31869	NM_178743	ENSMUSG00000039908	Slc26a11	F630021I08Rik	solute carrier family 26, member 11	protein-coding	32.5	52.5	74.0	11.0	22.5	28.5
Merged-chr7-89216426-4	chr7	89215949	89216949	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 5 of 14)	L1_Rod|LINE|L1	122338.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36274465-2	chr1	36273965	36274965	+	943.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1040.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-176933428-4	chr1	176932939	176933939	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 14 of 18)	intron (NM_001357390, intron 14 of 18)	-97306.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35076719-4	chr7	35076218	35077218	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20152.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-72109197-3	chr7	72108702	72109702	+	943.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024703, intron 19 of 22)	intron (NM_001024703, intron 19 of 22)	-147184.0	NR_126483	102640608.0	Mm.399138	NR_126483	ENSMUSG00000108480	Gm36633	-	predicted gene, 36633	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27856398-7	chr15	27855912	27856912	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 11 of 56)	intron (NM_001081302, intron 11 of 56)	169436.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-179073157-4	chr1	179072663	179073663	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027188, intron 8 of 11)	L3b|LINE|CR1	444878.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122296371-2	chr7	122295871	122296871	+	943.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	7246.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4458484-4	chr2	4457989	4458989	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	57513.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-111864257-1	chr1	111863757	111864757	+	943.0	f0_c57.idr	5' UTR (NM_001081316, exon 1 of 2)	5' UTR (NM_001081316, exon 1 of 2)	661.0	NM_001081316	319901.0	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding	5.0	16.0	32.0	18.0	22.0	27.5
Merged-chr5-140615519-2	chr5	140615019	140616019	+	943.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008494)	TTS (NM_008494)	8178.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40783301-6	chr9	40782830	40783830	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133733, exon 7 of 7)	3' UTR (NM_133733, exon 7 of 7)	-17943.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	14.5	105.0	62.0	28.5	84.5	37.0
Merged-chr12-73445314-3	chr12	73444807	73445807	+	943.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35744.0	NR_046013	380765.0	Mm.490476	NR_046013	ENSMUSG00000056359	D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	0.0	0.0	2.0	0.0	0.0	1.0
Merged-chr11-32553646-1	chr11	32553146	32554146	+	943.0	f1_balb.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	20380.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	74.0	160.5	142.0	71.0	206.5	157.0
Merged-chr2-148407378-6	chr2	148406856	148407856	+	942.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009378, exon 1 of 1)	exon (NM_009378, exon 1 of 1)	832.0	NM_009378	21824.0	Mm.24096	NM_009378	ENSMUSG00000074743	Thbd	AI385582|CD141|TM	thrombomodulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51069818-2	chr14	51069318	51070318	+	942.958374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_207558)	TTS (NM_207558)	1624.0	NM_207558	404319.0	Mm.377276	NM_207558	ENSMUSG00000035932	Olfr750	GA_x5J8B7W5WBF-6267395-6266441|GA_x6K02T2PMLR-6808276-6807281|MOR103-18	olfactory receptor 750	protein-coding	6.0	2.5	2.5	5.0	3.5	1.0
Merged-chr14-121907455-4	chr14	121906968	121907968	+	942.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 3 of 8)	intron (NM_026861, intron 3 of 8)	8306.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	50.0	100.0	40.0	27.5	85.5	41.0
Merged-chr11-95749837-4	chr11	95749325	95750325	+	942.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_201609, exon 1 of 5)	exon (NM_201609, exon 1 of 5)	758.0	NM_201609	268469.0	Mm.389038	NM_201609	ENSMUSG00000075595	Zfp652	9530033F24Rik|ZNF652	zinc finger protein 652	protein-coding	7.0	8.0	6.5	3.5	2.5	10.5
Merged-chr3-115793508-4	chr3	115793047	115794047	+	942.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78492.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167660800-6	chr2	167660311	167661311	+	942.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145538, intron 1 of 5)	intron (NM_145538, intron 1 of 5)	733.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71192193-4	chr17	71191674	71192674	+	942.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	L1MC3|LINE|L1	8196.0	NM_022882	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	22.0	15.5	35.0	10.0	22.5	23.5
Merged-chr16-77174912-4	chr16	77174421	77175421	+	942.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-154407.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64038106-3	chr7	64037595	64038595	+	942.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99180.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98631667-4	chr15	98631154	98632154	+	942.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001044741)	promoter-TSS (NM_001044741)	-674.0	NM_001044741	12297.0	Mm.3544	NM_007581	ENSMUSG00000003352	Cacnb3	Beta3|CAB3|Ca(v)beta3|Cchb3	calcium channel, voltage-dependent, beta 3 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115472900-2	chr11	115472400	115473400	+	942.916626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001080934, exon 4 of 4)	exon (NM_001080934, exon 4 of 4)	-2767.0	NM_177778	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	7.5	17.0	14.0	4.5	28.5	12.0
Merged-chr9-59476818-4	chr9	59476316	59477316	+	942.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045640)	TTS (NR_045640)	4925.0	NR_045640	100504377.0	Mm.446631	NR_045640		Gm20199	-	predicted gene, 20199	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-120300232-3	chr13	120299730	120300730	+	942.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037925)	promoter-TSS (NM_001037925)	-162.0	NM_001037925	625360.0	Mm.327506	NM_001037925	ENSMUSG00000094796	BC147527	-	cDNA sequence BC147527	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-65486375-3	chr7	65485862	65486862	+	942.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95669.0	NR_131060	407810.0	Mm.249337	NR_131060	ENSMUSG00000086662	BC046251	-	cDNA sequence BC046251	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112672036-3	chr12	112671533	112672533	+	942.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331107, intron 1 of 13)	intron (NM_001331107, intron 1 of 13)	2243.0	NM_001165894	11651.0	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19503683-4	chr7	19503180	19504180	+	942.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4651.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-33334031-2	chr12	33333522	33334522	+	942.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033436, intron 2 of 7)	intron (NM_001033436, intron 2 of 7)	31507.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11322754-2	chr4	11322254	11323254	+	942.875	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081201)	promoter-TSS (NM_001081201)	-623.0	NM_001081201	381510.0	Mm.331486	NM_001081201	ENSMUSG00000045205	Dpy19l4	Gm1023|Narg3	dpy-19-like 4 (C. elegans)	protein-coding	0.0	1.0	1.0	5.0	1.5	4.0
Merged-chr5-62763341-4	chr5	62762839	62763839	+	942.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	2838.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	12.5	30.0	14.5	18.0	22.5	17.0
Merged-chr4-57902879-2	chr4	57902379	57903379	+	942.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13385.0	NM_178727	242484.0	Mm.23214	NM_178727	ENSMUSG00000052117	D630039A03Rik	-	RIKEN cDNA D630039A03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-119027331-4	chr14	119026828	119027828	+	942.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081252, intron 26 of 38)	intron (NM_001081252, intron 26 of 38)	-71637.0	NR_153786	102635192.0	Mm.398079	NR_153786		Gm16835	-	predicted gene, 16835	ncRNA	2.5	3.0	1.0	0.0	1.5	4.0
Merged-chr5-117363273-4	chr5	117362755	117363755	+	942.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021539, intron 1 of 8)	intron (NM_021539, intron 1 of 8)	5950.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	21.5	13.0	29.0	30.5	38.5	26.0
Merged-chr3-83995538-4	chr3	83995024	83996024	+	942.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172681, intron 3 of 34)	intron (NM_172681, intron 3 of 34)	44637.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37332854-4	chr13	37332364	37333364	+	942.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12481.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	6.0	13.0	12.0	15.0	8.0	20.5
Merged-chr17-15577530-4	chr17	15577024	15578024	+	942.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14201.0	NM_144809	213389.0	Mm.215162	NM_144809	ENSMUSG00000051977	Prdm9	BC012016|Dsbc1|G1-419-29|Meisetz|PRDM9-B|Rcr1|repro7	PR domain containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125046861-4	chr6	125046358	125047358	+	942.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133345, intron 2 of 7)	intron (NM_133345, intron 2 of 7)	2995.0	NR_130997	78202.0	Mm.445941	NR_130997	ENSMUSG00000108034	4930557K07Rik	Gm43989	RIKEN cDNA 4930557K07 gene	ncRNA	0.0	0.5	1.5	0.0	0.0	0.0
Merged-chr6-30403680-4	chr6	30403196	30404196	+	942.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311087, intron 1 of 8)	intron (NM_001311087, intron 1 of 8)	1841.0	NM_001311087	76788.0	Mm.277308	NM_029742	ENSMUSG00000029775	Klhdc10	2410127E18Rik|AI593221|mKIAA0265	kelch domain containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-44724569-3	chr18	44724061	44725061	+	942.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001085373, exon 3 of 19)	exon (NM_001085373, exon 3 of 19)	-62295.0	NM_001085374	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	3.0	6.0	2.5	1.5	13.0	0.0
Merged-chr6-38982856-4	chr6	38982355	38983355	+	942.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 4 of 12)	ORR1D2|LTR|ERVL-MaLR	63869.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-3344515-4	chr6	3344019	3345019	+	942.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55052.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	38.0	85.0	66.0	12.5	29.0	24.5
Merged-chr10-12867742-3	chr10	12867173	12868173	+	942.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5938.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80688914-7	chr7	80688415	80689415	+	942.828552	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173863)	promoter-TSS (NM_173863)	-38.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	18.0	43.0	59.5	19.5	50.5	34.5
Merged-chr3-94431193-4	chr3	94430693	94431693	+	942.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001357711, exon 14 of 14)	3' UTR (NM_001357711, exon 14 of 14)	5458.0	NM_016901	53814.0	Mm.440422	NM_016901	ENSMUSG00000028141	Oaz3	AZ3|Az-3|Oaz-t	ornithine decarboxylase antizyme 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-48016671-4	chr8	48016129	48017129	+	942.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26078.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-178449294-4	chr1	178448741	178449741	+	942.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026626, intron 2 of 6)	intron (NM_026626, intron 2 of 6)	43223.0	NM_026626	68226.0	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91693664-4	chr6	91693166	91694166	+	942.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 1 of 14)	intron (NM_009320, intron 1 of 14)	9599.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100402083-2	chr11	100401583	100402583	+	942.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_132425, intron 2 of 3)	intron (NR_132425, intron 2 of 3)	3967.0	NR_132425	102635937.0	Mm.421398	NR_132425		Gm12348	-	predicted gene 12348	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97312086-4	chr15	97311593	97312593	+	942.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 3 of 5)	intron (NM_172293, intron 3 of 5)	-64806.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93242344-4	chr10	93241842	93242842	+	942.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_146239)	TTS (NM_146239)	68817.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	20.5	20.0	18.5	18.5	21.5	14.5
Merged-chr10-93180132-4	chr10	93179621	93180621	+	942.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146239, intron 1 of 16)	MTB_Mm|LTR|ERVL-MaLR	17336.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	9.0	2.5	27.5	5.0	14.0	14.5
Merged-chr17-17895592-4	chr17	17895093	17896093	+	942.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7769.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	40.0	79.5	54.0	51.0	56.0	64.0
Merged-chr15-28025148-4	chr15	28024588	28025588	+	942.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	CpG	760.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63642449-4	chr9	63641961	63642961	+	942.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151671, exon 10 of 10)	non-coding (NR_151671, exon 10 of 10)	39815.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91299989-4	chr1	91299561	91300561	+	942.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016717, intron 1 of 11)	intron (NM_016717, intron 1 of 11)	1723.0	NM_016717	50880.0	Mm.25724	NM_016717	ENSMUSG00000026307	Scly	9830169H08|A930015N15Rik|SCL|Scly1|Scly2	selenocysteine lyase	protein-coding	9.5	11.0	15.5	1.5	13.5	23.0
Merged-chr9-85748455-2	chr9	85747968	85748968	+	942.75	f0_balb.idr|f0_c57.idr	intron (NM_175371, intron 1 of 27)	intron (NM_175371, intron 1 of 27)	866.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118870402-4	chr10	118869872	118870872	+	942.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1469.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	27.0	91.5	52.0	65.5	100.5	57.5
Merged-chr2-19038365-4	chr2	19037873	19038873	+	942.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40054.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-37077465-4	chr11	37076950	37077950	+	942.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-133209.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.0	5.5	9.5	3.5	11.5	17.5
Merged-chr12-3812813-4	chr12	3812314	3813314	+	942.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	5654.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122690894-4	chr10	122690396	122691396	+	942.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	11581.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0.0	2.0	3.0	11.0	7.5	4.0
Merged-chr15-75920380-5	chr15	75919829	75920829	+	942.7000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025412, intron 1 of 5)	intron (NM_025412, intron 1 of 5)	1231.0	NM_025412	66194.0	Mm.250599	NM_025412	ENSMUSG00000022571	Pycrl	1110058B13Rik|2700073G24Rik|Pycr3	pyrroline-5-carboxylate reductase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-5514898-4	chr5	5514413	5515413	+	942.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022890)	promoter-TSS (NM_022890)	63.0	NM_022890	64945.0	Mm.40132	NM_022890	ENSMUSG00000046798	Cldn12	-	claudin 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134543439-4	chr4	134542944	134543944	+	942.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029100, intron 6 of 11)	intron (NM_029100, intron 6 of 11)	-8057.0	NM_029759	76824.0	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr3-93547346-4	chr3	93546855	93547855	+	942.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7762.0	NM_009112	20194.0	Mm.1	NM_009112	ENSMUSG00000041959	S100a10	42C|AA409961|AL024248|CAL12|CLP11|Cal1l|p10|p11	S100 calcium binding protein A10 (calpactin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45251844-3	chr9	45251346	45252346	+	942.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14861.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3743986-3	chr4	3743487	3744487	+	942.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 4 of 12)	MIRb|SINE|MIR	29023.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	60.5	114.5	80.5	41.0	77.5	56.0
Merged-chr5-108066192-3	chr5	108065757	108066757	+	942.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253880, intron 1 of 12)	intron (NM_001253880, intron 1 of 12)	583.0	NR_152817	17765.0	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	1.0	2.0	2.5	1.5	5.5	3.0
Merged-chr9-56924762-4	chr9	56924272	56925272	+	942.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175483, intron 1 of 1)	intron (NM_175483, intron 1 of 1)	3599.0	NM_175483	235406.0	Mm.191459	NM_175483	ENSMUSG00000032733	Snx33	E130307J07Rik|Sh3px3	sorting nexin 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25533241-3	chr15	25532698	25533698	+	942.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89352.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-114624817-3	chr2	114624290	114625290	+	942.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025675, intron 3 of 8)	intron (NM_025675, intron 3 of 8)	30174.0	NM_001356438	66632.0	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding	10.0	1.5	2.5	0.0	7.5	4.0
Merged-chr18-21701990-3	chr18	21701492	21702492	+	942.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49624.0	NM_001081403	225266.0	Mm.436836	NM_001081403	ENSMUSG00000042514	Klhl14	6330403N15Rik|AI785250|printor	kelch-like 14	protein-coding	0.0	0.0	0.5	0.0	1.5	1.5
Merged-chr18-24652173-4	chr18	24651664	24652664	+	942.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1527.0	NM_026779	68591.0	Mm.28252	NM_026779	ENSMUSG00000039616	Mocos	1110018O12Rik|HMCS|MCS|MOS	molybdenum cofactor sulfurase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102492598-3	chr14	102492090	102493090	+	942.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	490042.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128103578-2	chr8	128103078	128104078	+	942.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	174647.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-85587946-2	chr10	85587456	85588456	+	942.666626	f0_c57.idr|f1_c57bl6.idr	intron (NM_028709, intron 3 of 16)	intron (NM_028709, intron 3 of 16)	-10455.0	NM_001017525	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	1.5	2.0	6.0	1.0	8.0	2.0
Merged-chr9-120602942-4	chr9	120602462	120603462	+	942.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25631.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42759918-4	chr10	42759417	42760417	+	942.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1579.0	NM_001359283	140740.0	Mm.214344	NM_153055	ENSMUSG00000019802	Sec63	5730478J10Rik|AI649014|AW319215	SEC63-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102204115-4	chr15	102203629	102204629	+	942.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289695)	promoter-TSS (NM_001289695)	129.0	NM_001358674	68744.0	Mm.352945	NM_153194	ENSMUSG00000046897	Zfp740	1110034O07Rik|AW548228|Znf740	zinc finger protein 740	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-8738078-6	chr16	8737570	8738570	+	942.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003918, intron 1 of 30)	CpG	272.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	0.0	0.0	1.5	0.0	2.5	3.0
Merged-chr1-84241601-4	chr1	84241106	84242106	+	942.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003948, intron 1 of 2)	intron (NM_001003948, intron 1 of 2)	-22645.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60928069-4	chr2	60927562	60928562	+	942.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	35142.0	NM_020296	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85444858-4	chr12	85444349	85445349	+	942.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29041.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135010726-4	chr5	135010202	135011202	+	942.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145215, intron 2 of 5)	intron (NM_145215, intron 2 of 5)	1246.0	NR_033794	68758.0	Mm.389700	NM_145215	ENSMUSG00000040532	Abhd11	1110054D16Rik|A630008N09Rik|Wbscr21	abhydrolase domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-76513209-4	chr6	76512705	76513705	+	942.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-729272.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69462136-4	chr12	69461647	69462647	+	942.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13403.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	9.5	19.0	17.0	10.0	9.0	25.5
Merged-chr18-49990491-3	chr18	49989989	49990989	+	942.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	11062.0	NM_001177759	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	1.5	4.5	1.0	0.5	0.5	0.0
Merged-chr6-113469282-4	chr6	113468781	113469781	+	942.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145826, intron 14 of 14)	intron (NM_145826, intron 14 of 14)	-2174.0	NM_178942	171095.0	Mm.213397	NM_134159	ENSMUSG00000030281	Il17rc	1110025H02Rik|Gm19850|IL-17RC|IL17-RC|IL17-RL|Il17rl	interleukin 17 receptor C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-66270834-3	chr18	66270346	66271346	+	942.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178793, intron 2 of 10)	intron (NM_178793, intron 2 of 10)	20992.0	NM_178793	320924.0	Mm.442049	NM_178793	ENSMUSG00000046318	Ccbe1	4933426F18Rik|9430093N24Rik|mKIAA1983	collagen and calcium binding EGF domains 1	protein-coding	8.0	3.0	1.5	4.0	2.0	2.0
Merged-chr19-41982123-4	chr19	41981643	41982643	+	942.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	CpG	380.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	12.5	49.0	27.0	14.5	36.5	31.5
Merged-chr2-128693780-2	chr2	128693280	128694280	+	942.5833130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5135.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102692742-4	chr12	102692242	102693242	+	942.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	-7722.0	NR_035457	100316812.0		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117904164-4	chr5	117903651	117904651	+	942.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 8 of 27)	intron (NM_008712, intron 8 of 27)	37312.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120358077-4	chr11	120357570	120358570	+	942.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3464.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-89339995-4	chr13	89339490	89340490	+	942.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-200646.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	3.0	14.0	24.0	3.0	14.0	24.0
Merged-chr4-40978052-3	chr4	40977551	40978551	+	942.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290448, intron 2 of 15)	intron (NM_001290448, intron 2 of 15)	7108.0	NM_023739	74164.0	Mm.247456	NM_023739	ENSMUSG00000028423	Nfx1	1300017N15Rik|3000003M19Rik|NFX.1|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45105637-3	chr7	45105141	45106141	+	942.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1819.0	NM_010189	14132.0	Mm.3303	NM_010189	ENSMUSG00000003420	Fcgrt	FcRn	Fc receptor, IgG, alpha chain transporter	protein-coding	0.0	0.5	0.5	0.0	7.0	1.5
Merged-chr3-9199116-3	chr3	9198602	9199602	+	942.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51465.0	NM_177660	229055.0	Mm.103262	NM_177660	ENSMUSG00000069114	Zbtb10	4832414A18|AU021107|RINZF	zinc finger and BTB domain containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50751201-3	chr15	50750724	50751724	+	942.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	137825.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	5.0	8.0	0.0	5.5	3.0	8.0
Merged-chr10-19508179-3	chr10	19507672	19508672	+	942.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_152784)	TTS (NR_152784)	13529.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-24568224-4	chr4	24567724	24568724	+	942.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149739, intron 13 of 24)	intron (NR_149739, intron 13 of 24)	71773.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50908385-4	chr14	50907911	50908911	+	942.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15156.0	NM_001166651	546611.0	Mm.390692	NM_001166651	ENSMUSG00000090799	Klhl33	EG546611	kelch-like 33	protein-coding	12.0	44.0	25.5	49.0	57.0	65.0
Merged-chr13-12340784-4	chr13	12340280	12341280	+	942.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033268)	promoter-TSS (NM_033268)	-48.0	NM_033268	11472.0	Mm.37638	NM_033268	ENSMUSG00000052374	Actn2	1110008F24Rik	actinin alpha 2	protein-coding	0.0	0.5	0.0	0.0	1.5	0.0
Merged-chr13-94702811-4	chr13	94702417	94703417	+	942.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-86026.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73046746-4	chr12	73046258	73047258	+	942.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009189)	promoter-TSS (NM_009189)	-46.0	NM_009189	20471.0	Mm.4645	NM_009189	ENSMUSG00000051367	Six1	BB138287	sine oculis-related homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-40904801-3	chr14	40904287	40905287	+	942.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11822.0	NM_177816	328381.0	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23874673-2	chr17	23874175	23875175	+	942.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6201.0	NM_019910	13184.0	Mm.371556	NM_019910	ENSMUSG00000096445	Dcpp1	BC005655|C86550|Dcpp|Dcpp-1|p20	demilune cell and parotid protein 1	protein-coding	4.0	2.5	1.5	0.5	12.5	0.0
Merged-chr2-170175674-2	chr2	170175174	170176174	+	942.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-32999.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80824930-2	chr10	80824430	80825430	+	942.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-1726.0	NM_001301034	18245.0	Mm.398119	NM_008753	ENSMUSG00000035242	Oaz1	AZ-1|AZ1|Antizyme|ODC-Az|Oaz	ornithine decarboxylase antizyme 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-75092651-2	chr16	75092151	75093151	+	942.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001358492, exon 1 of 27)	5' UTR (NM_001358492, exon 1 of 27)	119.0	NM_001358491	268902.0	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-24680615-2	chr1	24680115	24681115	+	942.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310483, intron 1 of 15)	Charlie1a|DNA|hAT-Charlie	1697.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-28341405-2	chr6	28340905	28341905	+	942.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-79804.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117536009-4	chr4	117535497	117536497	+	942.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14327.0	NM_001356404	140546.0	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68715595-4	chr10	68715110	68716110	+	942.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8136.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7472781-2	chr10	7472281	7473281	+	942.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029975, intron 1 of 5)	B1_Mus2|SINE|Alu	696.0	NM_029975	77777.0	Mm.442442	NM_029975	ENSMUSG00000079685	Ulbp1	A430108B07Rik|MULT1	UL16 binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29172245-2	chr11	29171781	29172781	+	942.5	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_134034)	promoter-TSS (NM_134034)	-626.0	NM_134034	104570.0	Mm.276386	NM_134034	ENSMUSG00000020463	Ppp4r3b	AW011752|AW557776|Smek2|mKIAA1387	protein phosphatase 4 regulatory subunit 3B	protein-coding	18.5	26.5	23.5	12.5	16.5	28.0
Merged-chr10-18423708-4	chr10	18423222	18424222	+	942.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173390, intron 1 of 6)	intron (NM_173390, intron 1 of 6)	16047.0	NM_173390	215819.0	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding	1.0	4.5	2.5	0.5	8.5	10.0
Merged-chr5-103725506-2	chr5	103725006	103726006	+	942.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28656.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-123648217-2	chr14	123647717	123648717	+	942.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-11923.0	NM_145467	223272.0	Mm.383176	NM_145467	ENSMUSG00000032925	Itgbl1	B930011D01Rik	integrin, beta-like 1	protein-coding	0.0	1.5	0.0	2.5	0.0	2.0
Merged-chr8-88667082-2	chr8	88666582	88667582	+	942.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 4 of 12)	intron (NM_145857, intron 4 of 12)	19735.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	21.5	76.0	73.0	36.5	105.5	76.5
Merged-chr11-86761744-2	chr11	86761244	86762244	+	942.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4177.0	NM_001356393	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52268503-4	chr13	52268005	52269005	+	942.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	171764.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87353549-2	chr16	87353049	87354049	+	942.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159331)	promoter-TSS (NM_001159331)	-636.0	NM_001159331	67768.0	Mm.296532	NM_026366	ENSMUSG00000044442	N6amt1	5830445C04Rik|Hemk2|Pred28	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-83885227-4	chr12	83884731	83885731	+	942.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073564, intron 1 of 12)	intron (NR_073564, intron 1 of 12)	-8419.0	NM_001272056	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130025207-2	chr5	130024707	130025707	+	942.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133768)	promoter-TSS (NM_133768)	-826.0	NM_133768	109900.0	Mm.23869	NM_133768	ENSMUSG00000025533	Asl	2510006M18Rik|ASAL	argininosuccinate lyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59229535-2	chr11	59229038	59230038	+	942.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5|LINE|L1	-1271.0	NM_007476	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	27.0	84.0	72.0	43.5	73.0	54.0
Merged-chr12-99994224-2	chr12	99993766	99994766	+	942.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	ORR1E|LTR|ERVL-MaLR	29767.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26380540-4	chr2	26379935	26380935	+	942.488098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290419, intron 1 of 23)	CpG	218.0	NM_172339	227644.0	Mm.207460	NM_172339	ENSMUSG00000036281	Snapc4	5730436L13Rik	small nuclear RNA activating complex, polypeptide 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70849414-4	chr11	70848964	70849964	+	942.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291143, intron 2 of 18)	B2_Mm1a|SINE|B2	4703.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	7.0	21.0	14.0	13.5	29.5	11.5
Merged-chr2-156725536-3	chr2	156725033	156726033	+	942.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042487, intron 1 of 6)	intron (NM_001042487, intron 1 of 6)	4254.0	NM_001042487	228836.0	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	DLG associated protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-48833863-4	chr11	48833307	48834307	+	942.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053166, intron 1 of 6)	intron (NM_053166, intron 1 of 6)	-3664.0	NM_001347446	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-42947041-4	chr4	42946543	42947543	+	942.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2824.0	NM_001355438	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	1.5	1.5	1.5	0.0	0.0	3.0
Merged-chr19-41333114-4	chr19	41332609	41333609	+	942.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	MTE2a|LTR|ERVL-MaLR	51961.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	83.0	182.5	160.5	84.5	144.5	151.5
Merged-chr14-7958794-4	chr14	7958297	7959297	+	942.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35385.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104655160-3	chr8	104654654	104655654	+	942.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13426.0	NM_026753	68523.0	Mm.279	NM_026753	ENSMUSG00000031879	Fam96b	1110019N10Rik	family with sequence similarity 96, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46409143-3	chr18	46408646	46409646	+	942.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56670.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	6.5	10.5	8.5	0.0	7.0	2.0
Merged-chr16-94602778-3	chr16	94602281	94603281	+	942.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-8638.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86047799-7	chr12	86047307	86048307	+	942.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081423, intron 33 of 33)	intron (NM_001081423, intron 33 of 33)	31234.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152262169-4	chr3	152261673	152262673	+	942.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199465, intron 1 of 12)	intron (NM_199465, intron 1 of 12)	3622.0	NM_001357206	68810.0	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130782687-4	chr4	130782179	130783179	+	942.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9858.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163929743-4	chr2	163929233	163930233	+	942.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11050.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	39.0	120.5	117.0	73.5	224.0	200.5
Merged-chr5-138694892-3	chr5	138694387	138695387	+	942.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60194.0	NM_030565	80752.0	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	10.0	7.0	4.0	1.0	22.5	15.5
Merged-chr19-36818951-3	chr19	36818443	36819443	+	942.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15289.0	NM_001163635	74493.0	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	5.5	8.0	17.5	3.5	2.0	13.5
Merged-chr14-51084013-4	chr14	51083528	51084528	+	942.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7049.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	25.0	117.5	81.0	71.5	265.0	173.5
Merged-chr2-48537106-3	chr2	48536596	48537596	+	942.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-277013.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	1.5	2.0	1.0	1.5	2.0	1.0
Merged-chr9-88546368-4	chr9	88545872	88546872	+	942.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-1648.0	NM_001163061	71640.0	Mm.259988	NM_001142943	ENSMUSG00000032425	Zfp949	4930422I07Rik|Nczf	zinc finger protein 949	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87187148-4	chr1	87186654	87187654	+	942.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027084, exon 11 of 13)	exon (NM_027084, exon 11 of 13)	-3443.0	NM_021600	11447.0	Mm.2811	NM_021600	ENSMUSG00000026251	Chrnd	Achr-4|Acrd|L10076	cholinergic receptor, nicotinic, delta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-141030872-4	chr2	141030371	141031371	+	942.354126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 5 of 18)	intron (NM_001013802, intron 5 of 18)	-359395.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-151686881-4	chr5	151686370	151687370	+	942.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35662.0	NM_027009	69263.0	Mm.12553	NM_027009	ENSMUSG00000033970	Rfc3	2810416I22Rik|38kDa|AU022547|Recc3	replication factor C (activator 1) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-177139820-4	chr1	177139314	177140314	+	942.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011785, intron 1 of 12)	RMER19B|LTR|ERVK	108953.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73686020-2	chr12	73685520	73686520	+	942.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	101224.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-21422777-3	chr17	21422276	21423276	+	942.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011760)	promoter-TSS (NM_011760)	-451.0	NM_011760	22712.0	Mm.12916	NM_011760	ENSMUSG00000023882	Zfp54	2810034D10Rik|KRAB10|Zfp-54|Zfp76|mszf83	zinc finger protein 54	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54874963-3	chr12	54874463	54875463	+	942.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12086.0	NM_007688	12632.0	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	12.5	4.0	1.0	3.0	1.0	3.0
Merged-chr2-58130238-3	chr2	58129741	58130741	+	942.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_139200, exon 8 of 8)	3' UTR (NM_139200, exon 8 of 8)	29881.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-119238605-5	chr12	119238134	119239134	+	942.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177290)	promoter-TSS (NM_177290)	-358.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-59032287-3	chr12	59031770	59032770	+	942.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	18879.0	NM_025656	66603.0	Mm.35353	NM_025656	ENSMUSG00000060121	Gemin2	Sip1|gemin-2	gem nuclear organelle associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70854078-3	chr8	70853601	70854601	+	942.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032397, intron 3 of 9)	intron (NM_032397, intron 3 of 9)	2907.0	NM_032397	84036.0	Mm.32074	NM_032397	ENSMUSG00000002908	Kcnn1	AI854248|KCa2.1|SK1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	protein-coding	2.5	5.0	4.0	0.5	0.5	3.5
Merged-chr2-173679429-3	chr2	173678928	173679928	+	942.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024436, intron 2 of 6)	intron (NM_024436, intron 2 of 6)	19583.0	NM_024436	19334.0	Mm.275304	NM_024436	ENSMUSG00000027519	Rab22a	3732413A17Rik|AI662177|AW319644|AW550514|E130120E14Rik|Rab22	RAB22A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39387221-3	chr10	39386720	39387720	+	942.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122893, intron 1 of 13)	intron (NM_001122893, intron 1 of 13)	17421.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99009011-3	chr15	99008514	99009514	+	942.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20877.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16227888-3	chr1	16227347	16228347	+	942.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025303)	TTS (NM_025303)	121965.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33920662-2	chr16	33920162	33921162	+	942.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	46376.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137072809-3	chr4	137072301	137073301	+	942.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24106.0	NM_198248	230848.0	Mm.31068	NM_198248	ENSMUSG00000060862	Zbtb40	BC059177|C230087D24|Gm571|mKIAA0478	zinc finger and BTB domain containing 40	protein-coding	13.0	2.0	0.5	3.0	6.5	1.5
Merged-chr9-97572638-3	chr9	97572123	97573123	+	942.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022319, intron 4 of 17)	intron (NM_022319, intron 4 of 17)	-202665.0	NM_030219	78911.0	Mm.108347	NM_030219	ENSMUSG00000032451	Trim42	4930486B16Rik	tripartite motif-containing 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8594858-4	chr3	8594365	8595365	+	942.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33186.0	NR_153352	102635065.0		NR_153352	ENSMUSG00000104102	Gm32496	-	predicted gene, 32496	ncRNA	10.0	12.0	8.5	1.0	16.5	4.5
Merged-chr5-100559566-4	chr5	100559069	100560069	+	942.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139198, intron 3 of 4)	intron (NM_139198, intron 3 of 4)	12636.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0.0	6.5	1.0	0.5	12.5	0.5
Merged-chr16-50449305-4	chr16	50448810	50449810	+	942.30835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-16844.0	NM_001347240	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16403536-6	chr7	16403043	16404043	+	942.305542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198631, intron 1 of 13)	intron (NM_198631, intron 1 of 13)	2347.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120189438-4	chr6	120188935	120189935	+	942.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-4388.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-82888881-4	chr9	82888381	82889381	+	942.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081216, intron 29 of 39)	intron (NM_001081216, intron 29 of 39)	59075.0	NM_001168240	65099.0	Mm.41415	NM_022986	ENSMUSG00000032251	Irak1bp1	4921528N06Rik|AI851240|Aabp3|Aip70|Simpl	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11589383-4	chr19	11588892	11589892	+	942.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026835, intron 5 of 6)	intron (NM_026835, intron 5 of 6)	15412.0	NM_026835	68774.0	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-93861488-4	chr13	93860996	93861996	+	942.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009712, intron 4 of 7)	intron (NM_009712, intron 4 of 7)	70719.0	NR_049198	100885837.0		NR_049198	ENSMUSG00000093480	Mir5624	Gm25075|mir-5624|mmu-mir-5624	microRNA 5624	ncRNA	0.0	8.0	2.5	0.0	1.5	1.5
Merged-chr3-152262897-4	chr3	152262389	152263389	+	942.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199465, intron 1 of 12)	intron (NM_199465, intron 1 of 12)	2906.0	NM_001357206	68810.0	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155694266-3	chr4	155693762	155694762	+	942.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178699)	promoter-TSS (NM_178699)	-80.0	NM_178699	230991.0	Mm.29083	NM_178699	ENSMUSG00000074738	Fndc10	B930041F14Rik|MNCb-3966	fibronectin type III domain containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17692153-4	chr12	17691579	17692579	+	942.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	1270.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	9.5	8.0	9.5	2.0	14.5	11.0
Merged-chr12-111016985-4	chr12	111016472	111017472	+	942.2625119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22574.0	NR_036598	77878.0	Mm.293198	NR_036598	ENSMUSG00000113056	6030440G07Rik	-	RIKEN cDNA 6030440G07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19614546-4	chr10	19614040	19615040	+	942.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-7488.0	NM_178258	237310.0	Mm.331979	NM_178258	ENSMUSG00000039760	Il22ra2	CRF2-10|CRF2-s1|CRF2X|Il-22bp	interleukin 22 receptor, alpha 2	protein-coding	1.5	1.0	0.5	0.0	7.0	0.5
Merged-chr6-113748312-4	chr6	113747714	113748714	+	942.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347365, exon 24 of 24)	3' UTR (NM_001347365, exon 24 of 24)	-7533.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34507412-4	chr18	34506914	34507914	+	942.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146084)	promoter-TSS (NM_146084)	-591.0	NM_146084	225358.0	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	33.0	44.0	24.5	49.0	80.5	38.0
Merged-chr9-50965534-3	chr9	50965048	50966048	+	942.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178710, intron 3 of 15)	intron (NM_178710, intron 3 of 15)	43525.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117092063-4	chr2	117091559	117092559	+	942.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29012.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36164902-4	chr15	36164415	36165415	+	942.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081253)	promoter-TSS (NM_001081253)	-31.0	NM_001081253	78803.0	Mm.26393	NM_175281	ENSMUSG00000048230	Fbxo43	4930533G20Rik|Emi2	F-box protein 43	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50251559-4	chr16	50251064	50252064	+	942.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 7 of 16)	ORR1E|LTR|ERVL-MaLR	-178712.0	NR_045935	224180.0	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123023350-3	chr5	123022842	123023842	+	942.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175423, intron 1 of 1)	intron (NM_175423, intron 1 of 1)	8268.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6018320-4	chr19	6017825	6018825	+	942.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045783, exon 5 of 5)	non-coding (NR_045783, exon 5 of 5)	-2500.0	NM_001110504	12333.0	Mm.6221	NM_007600	ENSMUSG00000024942	Capn1	Capa-1|Capa1|mu-calpin	calpain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38296864-2	chr15	38296364	38297364	+	942.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001289471, exon 3 of 5)	exon (NM_001289471, exon 3 of 5)	3036.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80846940-4	chr7	80846434	80847434	+	942.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31C_MM|LTR|ERVK	-15174.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134070084-4	chr6	134069582	134070582	+	942.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	34382.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94794282-4	chr13	94793763	94794763	+	942.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009321, intron 1 of 3)	intron (NM_009321, intron 1 of 3)	5320.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69101272-2	chr11	69100772	69101772	+	942.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_011065, exon 4 of 23)	exon (NM_011065, exon 4 of 23)	1120.0	NM_001159367	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95705106-19	chr16	95704711	95705711	+	942.236816	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011809, intron 1 of 9)	intron (NM_011809, intron 1 of 9)	2804.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43492425-4	chr4	43491933	43492933	+	942.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037913)	promoter-TSS (NM_001037913)	626.0	NR_001460	19782.0		NR_001460	ENSMUSG00000088088	Rmrp	1110032O22Rik|Rmrpr	RNA component of mitochondrial RNAase P	ncRNA	31.0	71.0	91.5	53.5	102.5	104.0
Merged-chr9-70791642-3	chr9	70791141	70792141	+	942.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	112659.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	0.0	1.0	5.0	5.0	2.5	1.5
Merged-chr8-108715290-3	chr8	108714840	108715840	+	942.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	CpG	696.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-4995533-9	chr17	4995012	4996012	+	942.2037349999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001085355, exon 1 of 20)	exon (NM_001085355, exon 1 of 20)	438.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-81910687-3	chr12	81910184	81911184	+	942.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018814, intron 3 of 35)	intron (NM_018814, intron 3 of 35)	50654.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134799476-4	chr4	134798989	134799989	+	942.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31485.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47127236-3	chr19	47126737	47127737	+	942.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011053, intron 29 of 35)	intron (NM_011053, intron 29 of 35)	11057.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	1.5	12.5	3.0	2.0	13.0	13.0
Merged-chr8-22477441-3	chr8	22476878	22477878	+	942.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001012667)	promoter-TSS (NM_001012667)	-499.0	NM_001146117	102032.0	Mm.378231	NM_001012667	ENSMUSG00000031534	Smim19	AI316807|BG694986|EST-c39	small integral membrane protein 19	protein-coding	39.5	73.5	55.5	20.5	82.5	60.5
Merged-chr12-8517583-2	chr12	8517079	8518079	+	942.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-17570.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	1.0	15.5	4.5	0.0	1.5	0.5
Merged-chr2-10010455-3	chr2	10009971	10010971	+	942.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027748, intron 2 of 6)	intron (NM_027748, intron 2 of 6)	38138.0	NM_027748	209361.0	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-32715347-4	chr3	32714828	32715828	+	942.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019673, intron 4 of 13)	intron (NM_019673, intron 4 of 13)	6782.0	NM_019673	56456.0	Mm.41077	NM_019673	ENSMUSG00000027671	Actl6a	2810432C06Rik|AI851094|ARP4|Actl6|Baf53a|C79802	actin-like 6A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39379955-4	chr6	39379408	39380408	+	942.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1445.0	NM_011226	19331.0	Mm.123866	NM_011226	ENSMUSG00000029923	Rab19	-	RAB19, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115181671-2	chr11	115181196	115182196	+	942.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_012030)	TTS (NM_012030)	5620.0	NM_025400	66176.0	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	12.5	3.0	1.5	11.5	4.5	3.0
Merged-chr15-58215965-2	chr15	58215465	58216465	+	942.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1073.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120714440-2	chr11	120713940	120714940	+	942.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016665)	promoter-TSS (NM_016665)	487.0	NM_153545	217366.0	Mm.347545	NM_153545	ENSMUSG00000025145	Lrrc45	BC023296	leucine rich repeat containing 45	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26446780-2	chr2	26446280	26447280	+	942.125	f1_balb.idr|f1_c57bl6.idr	intron (NR_152209, intron 1 of 2)	intron (NR_152209, intron 1 of 2)	856.0	NR_152207	100125929.0	Mm.392411	NR_152207		0610009E02Rik	-	RIKEN cDNA 0610009E02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-6127261-4	chr7	6126757	6127757	+	942.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28714.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96416564-4	chr9	96416062	96417062	+	942.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52131.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	1.5	4.5	10.0	4.5	1.5	0.0
Merged-chr10-80756390-6	chr10	80755868	80756868	+	942.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199322, intron 1 of 27)	intron (NM_199322, intron 1 of 27)	1165.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50047903-3	chr11	50047395	50048395	+	942.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 1 of 7)	intron (NM_001290750, intron 1 of 7)	-21807.0	NR_029769	723845.0		NR_029769	ENSMUSG00000065417	Mir340	Mirn340|mir-340|mmu-mir-340	microRNA 340	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4944613-3	chr18	4944109	4945109	+	942.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101980.0	NM_153153	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102518017-3	chr4	102517536	102518536	+	942.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-52024.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	47.5	50.0	54.5	32.0	38.0	52.5
Merged-chr16-44349510-3	chr16	44348983	44349983	+	942.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144550, intron 1 of 17)	intron (NM_144550, intron 1 of 17)	2082.0	NM_144550	212514.0	Mm.24035	NM_144550	ENSMUSG00000043065	Spice1	Ccdc52|D16Ertd480e	spindle and centriole associated protein 1	protein-coding	5.0	3.5	5.0	5.0	4.5	5.0
Merged-chr2-170507925-4	chr2	170507426	170508426	+	942.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040367, intron 1 of 2)	intron (NR_040367, intron 1 of 2)	-3304.0	NM_001110152	109054.0	Mm.28808	NM_001013369	ENSMUSG00000052033	Pfdn4	0610025M10Rik|1810063B06Rik|C-1|C1|Pfd4	prefoldin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-105684104-4	chr12	105683611	105684611	+	942.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029654, intron 1 of 41)	intron (NM_029654, intron 1 of 41)	1130.0	NM_029654	76559.0	Mm.114362	NM_029654	ENSMUSG00000041341	Atg2b	2410024A21Rik|AI047755|AI503411|AW558123|C030004M05Rik|C630028L02Rik|mKIAA4067	autophagy related 2B	protein-coding	17.5	20.5	40.0	4.5	23.0	24.5
Merged-chr14-61687896-4	chr14	61687395	61688395	+	942.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5522.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80373086-4	chr18	80372587	80373587	+	942.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8833.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-85571467-4	chr3	85570979	85571979	+	942.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2650.0	NM_144896	229487.0	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	0.0	0.0	3.5	3.0	5.0	0.5
Merged-chr6-7858686-3	chr6	7858183	7859183	+	942.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_052993, intron 1 of 3)	Tigger1|DNA|TcMar-Tigger	13459.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	0.0	1.5	3.0	0.0	0.0	1.5
Merged-chr13-54209635-4	chr13	54209164	54210164	+	942.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153432, intron 1 of 3)	intron (NR_153432, intron 1 of 3)	17531.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	37.0	92.0	46.0	26.5	32.0	38.0
Merged-chr11-106033543-3	chr11	106033041	106034041	+	942.0833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037712, intron 12 of 12)	IAPLTR1_Mm|LTR|ERVK	-3331.0	NM_027946	71833.0	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120231480-4	chr11	120230988	120231988	+	942.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151480, intron 1 of 1)	CpG	129.0	NR_151480	102640779.0	Mm.394084	NM_175248		2900052L18Rik	-	RIKEN cDNA 2900052L18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41594630-4	chr10	41594105	41595105	+	942.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 30 of 47)	MIRb|SINE|MIR	26589.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-54923501-4	chr1	54922956	54923956	+	942.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	MER81|DNA|hAT-Blackjack	2931.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-20891176-4	chr1	20890671	20891671	+	942.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040492)	promoter-TSS (NR_040492)	623.0	NM_028829	74229.0	Mm.40780	NM_028829	ENSMUSG00000025931	Paqr8	1700019B16Rik|3110001D06Rik	progestin and adipoQ receptor family member VIII	protein-coding	4.5	7.0	0.5	2.5	21.5	0.0
Merged-chr12-86079077-4	chr12	86078581	86079581	+	942.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009368)	promoter-TSS (NM_009368)	-40.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25972931-4	chr15	25972452	25973452	+	942.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001277318, exon 7 of 7)	3' UTR (NM_001277318, exon 7 of 7)	-11414.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48270025-4	chr17	48269529	48270529	+	942.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033922, intron 4 of 5)	intron (NM_001033922, intron 4 of 5)	5734.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-83041721-4	chr13	83041242	83042242	+	942.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-343409.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	3.5	2.0	7.5	6.0	6.5	2.5
Merged-chr8-119843625-3	chr8	119843107	119844107	+	942.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3028.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85943543-2	chr12	85943043	85944043	+	942.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 28 of 32)	intron (NM_001347395, intron 28 of 32)	118593.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58691611-2	chr15	58691111	58692111	+	942.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131816.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-25557007-1	chr4	25556507	25557507	+	942.0	f1_balb.idr	Intergenic	Lx|LINE|L1	242996.0	NM_010243	14348.0	Mm.39101	NM_010243	ENSMUSG00000055373	Fut9	AI746471|AU067636|mFUT9|mFuc-TIX	fucosyltransferase 9	protein-coding	2.0	0.0	0.0	1.5	1.5	0.0
Merged-chr13-48966148-4	chr13	48965656	48966656	+	942.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033268, intron 1 of 17)	intron (NM_001033268, intron 1 of 17)	1672.0	NM_001033268	218236.0	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18396681-6	chr16	18396193	18397193	+	942.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001272031, intron 1 of 16)	intron (NM_001272031, intron 1 of 16)	4130.0	NM_001272032	11877.0	Mm.293599	NM_033474	ENSMUSG00000000325	Arvcf	-	armadillo repeat gene deleted in velocardiofacial syndrome	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90483969-1	chr2	90483469	90484469	+	942.0	f1_balb.idr	intron (NM_008982, intron 1 of 23)	RLTR11C_MM|LTR|ERVK	-4795.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	14.5	36.5	21.0	30.0	18.5	15.5
Merged-chr2-91069388-2	chr2	91068888	91069888	+	942.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290765, intron 1 of 9)	MIRb|SINE|MIR	927.0	NM_026721	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102753551-4	chr4	102753041	102754041	+	942.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6594.0	NM_001285860	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	4.0	0.5	4.5	4.5	6.0	16.5
Merged-chr8-85559356-4	chr8	85558867	85559867	+	942.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-4096.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	19.0	28.0	16.5	23.0	27.0	10.5
Merged-chr5-125137275-4	chr5	125136772	125137772	+	942.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011424, intron 1 of 46)	intron (NM_011424, intron 1 of 46)	41942.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	5.5	18.0	3.0	9.5	16.0	18.5
Merged-chr12-24713911-2	chr12	24713411	24714411	+	942.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009104, exon 10 of 10)	3' UTR (NM_009104, exon 10 of 10)	5657.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	1.5	9.0	8.5	2.0	5.0	7.0
Merged-chr1-74964667-4	chr1	74964169	74965169	+	942.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12997.0	NM_010544	16147.0	Mm.439736	NM_010544	ENSMUSG00000006538	Ihh	HHG-2	Indian hedgehog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26477809-2	chr2	26477309	26478309	+	942.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 12 of 33)	intron (NM_008714, intron 12 of 33)	-7690.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-100498463-1	chr14	100497963	100498963	+	942.0	f1_balb.idr	Intergenic	Lx4A|LINE|L1	-348667.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	1.0	0.0	0.5	0.0	0.0	0.0
Merged-chr4-109119811-4	chr4	109119308	109120308	+	942.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355190, intron 2 of 21)	MTD|LTR|ERVL-MaLR	-1772.0	NM_001134791	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59783068-2	chr4	59782568	59783568	+	942.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013577, intron 1 of 4)	B4A|SINE|B4	787.0	NM_001013577	66209.0	Mm.51988	NM_001013577	ENSMUSG00000038544	Inip	1110054O05Rik|2610312O17Rik|AA399876|Ssbip1	INTS3 and NABP interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-7420361-3	chr17	7419863	7420863	+	942.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35058.0	NM_001142539	667055.0	Mm.327371	NM_001142539	ENSMUSG00000056133	Gm9992	-	predicted gene 9992	protein-coding	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110810755-2	chr5	110810255	110811255	+	942.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009469)	promoter-TSS (NM_009469)	-674.0	NM_001347394	22241.0	Mm.271898	NM_009469	ENSMUSG00000029512	Ulk1	AU041434|Unc51.1|mKIAA0722	unc-51 like kinase 1	protein-coding	22.5	55.0	35.0	28.5	43.5	48.0
Merged-chr14-51250504-3	chr14	51250008	51251008	+	942.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5604.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr4-135618186-3	chr4	135617705	135618705	+	942.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8450.0	NR_015613	73937.0	Mm.292326	NM_028688	ENSMUSG00000086788	1700029M20Rik	4930406E24Rik	RIKEN cDNA 1700029M20 gene	ncRNA	6.5	0.0	2.0	0.0	0.0	2.5
Merged-chr14-99299432-2	chr14	99298932	99299932	+	942.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009769, intron 1 of 3)	CpG	741.0	NM_009769	12224.0	Mm.30262	NM_009769	ENSMUSG00000005148	Klf5	4930520J07Rik|Bteb2|CKLF|IKLF	Kruppel-like factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109204547-3	chr4	109204041	109205041	+	942.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2269.0	NM_001346502	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-22778903-2	chr2	22778403	22779403	+	942.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	4576.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39442213-3	chr10	39441712	39442712	+	942.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	L2b|LINE|L2	72413.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-24045838-1	chr6	24045338	24046338	+	942.0	f1_c57bl6.idr	Intergenic	RLTR9F|LTR|ERVK	-75778.0	NM_207022	387347.0	Mm.377909	NM_207022	ENSMUSG00000043865	Tas2r118	Gm465|T2R18|Tas2r16|Tas2r18|mGR18|mt2r40	taste receptor, type 2, member 118	protein-coding	0.0	0.5	1.0	1.0	3.5	1.0
Merged-chr6-17464339-2	chr6	17463839	17464839	+	942.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008591, intron 1 of 21)	intron (NM_008591, intron 1 of 21)	382.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	0.0	2.0	0.0	0.0	0.0	0.0
Merged-chr9-55170940-4	chr9	55170460	55171460	+	942.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346658, intron 3 of 12)	intron (NM_001346658, intron 3 of 12)	20877.0	NM_001346658	109161.0	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95720670-2	chr16	95720170	95721170	+	942.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011809, exon 10 of 10)	3' UTR (NM_011809, exon 10 of 10)	18263.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102453456-2	chr11	102452965	102453965	+	942.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010575, exon 30 of 30)	exon (NM_010575, exon 30 of 30)	-5802.0	NM_199200	217219.0	Mm.259924	NM_199200	ENSMUSG00000034685	Fam171a2	-	family with sequence similarity 171, member A2	protein-coding	0.0	0.0	0.0	0.5	2.5	0.0
Merged-chr4-137865513-1	chr4	137865013	137866013	+	942.0	f1_balb.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	3276.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	7.0	53.5	42.0	29.5	61.5	56.0
Merged-chr12-111462403-3	chr12	111461889	111462889	+	942.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	19728.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74433878-2	chr1	74433376	74434376	+	942.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009509, intron 19 of 19)	B1_Mus1|SINE|Alu	24492.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128767250-2	chr2	128766750	128767750	+	942.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 8 of 18)	intron (NM_008587, intron 8 of 18)	-51053.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	3.5	25.5	38.0	5.5	27.0	11.5
Merged-chr9-123808766-4	chr9	123808273	123809273	+	941.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030712, intron 1 of 1)	intron (NM_030712, intron 1 of 1)	2296.0	NM_030712	80901.0	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-94721221-4	chr1	94720731	94721731	+	941.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76211.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122018481-4	chr7	122017975	122018975	+	941.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028758, intron 1 of 16)	intron (NM_028758, intron 1 of 16)	2723.0	NM_028758	74105.0	Mm.29619	NM_028758	ENSMUSG00000030872	Gga2	1200007E24Rik|mKIAA1080	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding	0.0	6.5	0.0	0.0	0.0	0.0
Merged-chr17-27910896-4	chr17	27910439	27911439	+	941.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	B4A|SINE|B4	1633.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	59.0	218.0	141.0	73.0	182.0	128.5
Merged-chr10-24591980-4	chr10	24591489	24592489	+	941.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3453.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	2.0	0.0	0.5	2.0	0.0	0.5
Merged-chr5-89852962-4	chr5	89852488	89853488	+	941.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081401, intron 3 of 21)	intron (NM_001081401, intron 3 of 21)	30346.0	NM_177872	330119.0	Mm.133062	NM_177872	ENSMUSG00000043635	Adamts3	1100001H14Rik|6330442E02Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	protein-coding	0.0	5.5	2.5	1.0	2.5	2.5
Merged-chr10-51435871-4	chr10	51435351	51436351	+	941.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44761.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79618308-3	chr2	79617795	79618795	+	941.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17130.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	4.5	10.0	8.5	15.5	16.5	26.0
Merged-chr8-14815843-3	chr8	14815332	14816332	+	941.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 9 of 15)	intron (NM_172910, intron 9 of 15)	-72704.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	19.5	46.5	19.5	19.5	60.5	33.5
Merged-chr7-92700310-4	chr7	92699735	92700735	+	941.9404910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30323.0	NM_029078	74737.0	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	2.5	3.0	1.5	0.0	0.0	0.0
Merged-chr5-64102770-3	chr5	64102264	64103264	+	941.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025700, intron 3 of 13)	ID|SINE|ID	9825.0	NM_001356964	66681.0	Mm.2325	NM_025700	ENSMUSG00000029171	Pgm1	3230402E02Rik|Pgm-1|Pgm2	phosphoglucomutase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-5125357-5	chr7	5124899	5125899	+	941.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009028, exon 1 of 1)	exon (NM_009028, exon 1 of 1)	551.0	NM_009028	19428.0	Mm.322186	NM_009028	ENSMUSG00000083649	Rasl2-9	M2|Ran|Ran/M2|Rasl2-9-ps	RAS-like, family 2, locus 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117506733-2	chr5	117506233	117507233	+	941.9285890000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 3 of 19)	B4|SINE|B4	92731.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr2-58533518-4	chr2	58532986	58533986	+	941.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110204, intron 2 of 12)	intron (NM_001110204, intron 2 of 12)	27924.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27213166-4	chr3	27212656	27213656	+	941.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	30152.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129304673-4	chr2	129304164	129305164	+	941.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010554, intron 5 of 6)	intron (NM_010554, intron 5 of 6)	5308.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	12.0	77.0	42.5	40.0	51.5	32.5
Merged-chr3-41563720-4	chr3	41563217	41564217	+	941.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130185)	promoter-TSS (NM_001130185)	-34.0	NM_001130185	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	0.0	1.0	0.0	0.0	8.0	6.5
Merged-chr8-117480695-4	chr8	117480158	117481158	+	941.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17617.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22054504-4	chr9	22054001	22055001	+	941.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310759)	TTS (NM_001310759)	-2478.0	NM_010487	15571.0	Mm.390167	NM_010487	ENSMUSG00000003410	Elavl3	2600009P04Rik|Huc|PLE21|mHuC	ELAV like RNA binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135477090-4	chr3	135476581	135477581	+	941.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8530.0	NM_027288	110173.0	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-10068224-3	chr12	10067726	10068726	+	941.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-301745.0	NM_027588	70881.0	Mm.272843	NM_027588	ENSMUSG00000020622	Nt5c1b	4921514H13Rik|AIRP|CN-IB|cN1B	5'-nucleotidase, cytosolic IB	protein-coding	0.0	3.5	1.0	3.0	5.0	7.0
Merged-chr10-95670051-3	chr10	95669549	95670549	+	941.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-105903.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117916014-3	chr4	117915519	117916519	+	941.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1020.0	NM_146152	230673.0	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78359737-4	chr11	78359234	78360234	+	941.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008238, intron 8 of 8)	intron (NM_008238, intron 8 of 8)	13024.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180303816-4	chr1	180303301	180304301	+	941.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26675.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61799464-4	chr14	61798976	61799976	+	941.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117103.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	27.5	44.0	68.0	30.5	76.5	80.5
Merged-chr15-98708162-4	chr15	98707673	98708673	+	941.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153518)	promoter-TSS (NM_153518)	-54.0	NM_153518	105833.0	Mm.26205	NM_153518	ENSMUSG00000003354	Ccdc65	4933417K04Rik|AI428139|AU020178|NYD-SP28	coiled-coil domain containing 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59732240-2	chr9	59731740	59732740	+	941.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	18409.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41682933-4	chr10	41682438	41683438	+	941.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 5 of 47)	B3A|SINE|B2	33525.0	NM_001358562	75973.0	Mm.228517	NM_029493	ENSMUSG00000075225	Ccdc162	5033413D22Rik|Ccdc162p|Gm29096|Gm61|Gm6976	coiled-coil domain containing 162	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-87416795-4	chr12	87416248	87417248	+	941.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21009.0	NR_037228	100526546.0		NR_037228	ENSMUSG00000105428	Mir3068	mir-3068|mmu-mir-3068	microRNA 3068	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-48100428-4	chr4	48099912	48100912	+	941.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24507.0	NM_026343	67727.0	Mm.171334	NM_026343	ENSMUSG00000061455	Stx17	4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351	syntaxin 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-63896060-4	chr17	63895567	63896567	+	941.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001286415, exon 2 of 18)	5' UTR (NM_001286415, exon 2 of 18)	18001.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-176835076-4	chr1	176834537	176835537	+	941.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037996, exon 1 of 1)	non-coding (NR_037996, exon 1 of 1)	1096.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	10.0	13.5	10.5	6.0	21.5	9.5
Merged-chr10-96706878-4	chr10	96706385	96707385	+	941.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89884.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55449443-3	chr11	55448986	55449986	+	941.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 3 of 3)	intron (NM_009720, intron 3 of 3)	11722.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-79936877-3	chr18	79936377	79937377	+	941.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110018.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	0.0	1.0	2.0	17.5	49.0	56.5
Merged-chr11-43384625-4	chr11	43384133	43385133	+	941.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10172.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98812439-4	chr13	98811949	98812949	+	941.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172591, intron 1 of 25)	L1MB7|LINE|L1	3000.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136980523-4	chr6	136980016	136981016	+	941.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25993.0	NM_023898	78600.0	Mm.290622	NM_023898	ENSMUSG00000064330	Pde6h	A930033D18Rik|PDEgamma	phosphodiesterase 6H, cGMP-specific, cone, gamma	protein-coding	1.5	34.0	14.0	0.0	0.0	16.0
Merged-chr16-45005496-3	chr16	45004983	45005983	+	941.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61805.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-118846730-3	chr12	118846190	118847190	+	941.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177082, intron 1 of 2)	intron (NM_177082, intron 1 of 2)	361.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-144772230-4	chr5	144771721	144772721	+	941.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081362, intron 3 of 70)	intron (NM_001081362, intron 3 of 70)	3429.0	NM_001081362	100683.0	Mm.273570	NM_001081362	ENSMUSG00000045482	Trrap	AI481500	transformation/transcription domain-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122732658-4	chr5	122732134	122733134	+	941.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145358, exon 16 of 16)	3' UTR (NM_145358, exon 16 of 16)	25090.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	4.5	8.5	2.0	4.0	3.0	5.0
Merged-chr2-157131208-4	chr2	157130703	157131703	+	941.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139520, intron 1 of 16)	intron (NM_001139520, intron 1 of 16)	4019.0	NM_001139520	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127171086-4	chr10	127170559	127171559	+	941.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008080, exon 10 of 11)	exon (NM_008080, exon 10 of 11)	5228.0	NM_001358578	14421.0	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-34765921-4	chr4	34765422	34766422	+	941.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-9663.0	NM_001033255	214568.0	Mm.297405	NM_001033255	ENSMUSG00000071015	Gm136	-	predicted gene 136	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122939342-4	chr7	122938829	122939829	+	941.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31130.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93005690-4	chr16	93005176	93006176	+	941.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-179602.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	2.5	1.0	0.0	2.5	1.0	0.0
Merged-chr19-36928174-4	chr19	36927654	36928654	+	941.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080706, intron 1 of 37)	intron (NM_001080706, intron 1 of 37)	2075.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44136416-4	chr7	44135921	44136921	+	941.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008454)	promoter-TSS (NM_008454)	-869.0	NM_008454	16615.0	Mm.440887	NM_008454	ENSMUSG00000038968	Klk1b16	Klk16|mGk-16	kallikrein 1-related peptidase b16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3897347-3	chr12	3896861	3897861	+	941.738098	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001271753, exon 11 of 23)	exon (NM_001271753, exon 11 of 23)	5617.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102317772-10	chr11	102317307	102318307	+	941.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001044383)	promoter-TSS (NM_001044383)	-520.0	NM_001044383	21429.0	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-66952002-4	chr6	66951517	66952517	+	941.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177560, intron 3 of 4)	ORR1D1|LTR|ERVL-MaLR	55126.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9776062-4	chr13	9775554	9776554	+	941.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10733.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86599401-4	chr6	86598922	86599922	+	941.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28752.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11100479-3	chr8	11099972	11100972	+	941.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92042.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-154885706-2	chr3	154885204	154886204	+	941.708374	f0_c57.idr|f1_c57bl6.idr	intron (NM_177066, intron 17 of 24)	intron (NM_177066, intron 17 of 24)	169703.0	NM_177066	435766.0	Mm.210428	NM_177066	ENSMUSG00000040086	Tnni3k	Cark|D830019J24Rik	TNNI3 interacting kinase	protein-coding	5.5	11.0	2.5	5.0	0.5	0.0
Merged-chr14-118713538-4	chr14	118713050	118714050	+	941.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-7331.0	NM_001033336	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21961134-4	chr10	21960619	21961619	+	941.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 2 of 13)	intron (NM_001161845, intron 2 of 13)	-17553.0	NM_001161847	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	5.5	7.5	5.5	12.5	9.0	5.5
Merged-chr12-32944208-4	chr12	32943735	32944735	+	941.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_044986, intron 2 of 5)	intron (NR_044986, intron 2 of 5)	9554.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	3.0	4.5	3.0	2.5	1.0	4.5
Merged-chr2-173738302-4	chr2	173737792	173738792	+	941.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019806, intron 1 of 5)	intron (NM_019806, intron 1 of 5)	721.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36606724-4	chr15	36606194	36607194	+	941.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008774, intron 1 of 14)	intron (NM_008774, intron 1 of 14)	2279.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79400356-4	chr15	79399869	79400869	+	941.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172608, intron 1 of 8)	intron (NM_172608, intron 1 of 8)	2550.0	NM_001253817	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	17.0	21.5	1.0	2.5	10.0	3.0
Merged-chr9-62058281-4	chr9	62057787	62058787	+	941.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_033320, exon 3 of 3)	3' UTR (NM_033320, exon 3 of 3)	12319.0	NM_033320	93683.0	Mm.24411	NM_033320	ENSMUSG00000032252	Glce	1110017N23Rik|AI747411|C130034A12Rik|Hsepi	glucuronyl C5-epimerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117483073-4	chr5	117482552	117483552	+	941.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	69050.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0.0	2.5	1.0	4.0	2.0	7.0
Merged-chr1-131797349-3	chr1	131796866	131797866	+	941.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178079)	promoter-TSS (NM_178079)	-29.0	NM_178079	212933.0	Mm.23844	NM_178079	ENSMUSG00000042251	Pm20d1	4732466D17Rik|AI098026	peptidase M20 domain containing 1	protein-coding	11.0	7.0	2.5	7.0	9.0	1.5
Merged-chr12-91665731-3	chr12	91665259	91666259	+	941.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	-75272.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-85012782-3	chr15	85012264	85013264	+	941.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4377.0	NM_023478	22270.0	Mm.46214	NM_023478	ENSMUSG00000022435	Upk3a	1110017C07Rik|UP3a|UPIII|Upk3	uroplakin 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66114320-4	chr5	66113800	66114800	+	941.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-16121.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	45.5	92.0	77.0	49.0	110.5	63.5
Merged-chr2-160237548-3	chr2	160237041	160238041	+	941.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89953.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61482441-3	chr18	61481944	61482944	+	941.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045419, intron 1 of 3)	intron (NR_045419, intron 1 of 3)	2163.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	16.5	64.0	38.0	15.0	67.5	40.5
Merged-chr5-139408129-3	chr5	139407637	139408637	+	941.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177000, intron 1 of 1)	intron (NM_177000, intron 1 of 1)	1750.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79625026-4	chr11	79624533	79625533	+	941.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175543, intron 3 of 14)	intron (NM_175543, intron 3 of 14)	-1870.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31318672-4	chr6	31318173	31319173	+	941.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040261, intron 3 of 4)	intron (NR_040261, intron 3 of 4)	80100.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-81052530-4	chr3	81052041	81053041	+	941.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	16125.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	59.0	85.5	61.0	47.5	105.5	59.5
Merged-chr13-52578544-9	chr13	52577861	52578861	+	941.6296390000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-5076.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27859487-4	chr3	27858961	27859961	+	941.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36907.0	NM_001164437	208613.0	Mm.59189	NM_001164437	ENSMUSG00000043164	Tmem212	E030011K20Rik|Gm564	transmembrane protein 212	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-160441360-4	chr1	160440848	160441848	+	941.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013862, intron 17 of 20)	intron (NM_013862, intron 17 of 20)	-89777.0	NM_001038621	29809.0	Mm.25833	NM_013862	ENSMUSG00000026721	Rabgap1l	5830411O09Rik|8430421H08Rik|9630005B12Rik|AW049894|HHL|Hh1|mKIAA0471	RAB GTPase activating protein 1-like	protein-coding	2.5	6.0	6.5	2.0	0.5	3.0
Merged-chr3-97202111-4	chr3	97201606	97202606	+	941.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25258.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-145964187-4	chr3	145963670	145964670	+	941.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23700.0	NM_001166064	214804.0	Mm.268854	NM_001166064	ENSMUSG00000036863	Syde2	C430017H16Rik	synapse defective 1, Rho GTPase, homolog 2 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135890068-4	chr4	135889558	135890558	+	941.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5131.0	NM_009924	12802.0	Mm.297251	NM_009924	ENSMUSG00000062585	Cnr2	CB-2|CB2|CB2-R	cannabinoid receptor 2 (macrophage)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35011693-3	chr12	35011197	35012197	+	941.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26936.0	NM_029294	75456.0	Mm.79179	NM_029294	ENSMUSG00000092305	Prps1l1	1700011K15Rik	phosphoribosyl pyrophosphate synthetase 1-like 1	protein-coding	1.0	0.0	1.0	4.5	8.0	3.5
Merged-chr10-94515040-5	chr10	94514554	94515554	+	941.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172051, exon 1 of 4)	exon (NM_172051, exon 1 of 4)	197.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20663171-4	chr10	20662695	20663695	+	941.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 1 of 12)	intron (NM_013875, intron 1 of 12)	61883.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18345393-4	chr16	18344886	18345886	+	941.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359110, intron 1 of 9)	intron (NM_001359110, intron 1 of 9)	-1454.0	NM_001359111	27883.0	Mm.265990	NM_138583	ENSMUSG00000013539	Tango2	D16H22S680E|T10	transport and golgi organization 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-190826642-4	chr1	190826136	190827136	+	941.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178775, intron 8 of 14)	L1MDa|LINE|L1	85134.0	NM_178775	320119.0	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111868100-4	chr13	111867577	111868577	+	941.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_130345, exon 1 of 3)	non-coding (NR_130345, exon 1 of 3)	141.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	8.0	11.0	25.0	7.0	5.5	11.0
Merged-chr5-105655623-3	chr5	105655031	105656031	+	941.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44438.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	2.5	3.5	4.0	23.0	36.5	23.0
Merged-chr9-22165021-4	chr9	22164502	22165502	+	941.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	8156.0	NM_001082532	66268.0	Mm.28924	NM_025457	ENSMUSG00000010607	Pigyl	1810008A14Rik|PIG-Y|Pigy	phosphatidylinositol glycan anchor biosynthesis, class Y-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139400488-4	chr7	139399989	139400989	+	941.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355162)	promoter-TSS (NM_001355162)	-5.0	NM_001355162	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-51239653-3	chr17	51239154	51240154	+	941.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38334.0	NR_037260	100526491.0		NR_037260	ENSMUSG00000105182	Mir669a-9	mmu-mir-669a-9	microRNA 4669a-9	ncRNA	0.0	0.0	0.0	0.0	0.0	3.0
Merged-chr2-155627261-3	chr2	155626784	155627784	+	941.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085378, intron 24 of 41)	intron (NM_001085378, intron 24 of 41)	4404.0	NR_030757	735275.0		NR_030757	ENSMUSG00000076312	Mir499	Mirn499|mir-499|mmu-mir-499	microRNA 499	ncRNA	1.5	8.0	2.5	7.5	12.0	7.5
Merged-chr2-155299666-3	chr2	155299150	155300150	+	941.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004721, intron 8 of 11)	intron (NM_001004721, intron 8 of 11)	23286.0	NR_046364	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	26.5	33.0	50.5	32.0	96.0	82.5
Merged-chr12-35406270-4	chr12	35405774	35406774	+	941.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	128715.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	10.0	23.0	17.5	20.0	12.0	23.0
Merged-chr16-91618998-4	chr16	91618514	91619514	+	941.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138664)	promoter-TSS (NM_138664)	-15.0	NM_138664	246738.0	Mm.101927	NM_138664	ENSMUSG00000039763	Dnajc28	BC020175|ORF28	DnaJ heat shock protein family (Hsp40) member C28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128387459-4	chr2	128386916	128387916	+	941.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	41935.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0.0	6.0	1.0	2.0	2.0	1.0
Merged-chr16-87597724-4	chr16	87597221	87598221	+	941.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44391.0	NM_144854	224419.0	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-99447285-4	chr11	99446785	99447785	+	941.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-9132.0	NM_023256	66809.0	Mm.28042	NM_023256	ENSMUSG00000035775	Krt20	9030623C06Rik|Ck-20|Ck20|K20|Krt21	keratin 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-6916740-4	chr10	6916259	6917259	+	941.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001170802)	TTS (NM_001170802)	63522.0	NM_001347225	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90575245-4	chr2	90574724	90575724	+	941.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	MIRc|SINE|MIR	5423.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37606415-2	chr13	37605915	37606915	+	941.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-219623.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121366671-3	chr10	121366182	121367182	+	941.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 1 of 13)	PB1D9|SINE|Alu	1592.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	39.5	59.0	77.0	24.5	95.5	51.5
Merged-chr11-116011798-2	chr11	116011298	116012298	+	941.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016905, intron 1 of 7)	intron (NM_016905, intron 1 of 7)	921.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4131310-2	chr7	4130810	4131810	+	941.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001305822, exon 10 of 14)	exon (NM_001305822, exon 10 of 14)	5616.0	NR_033548	100037396.0	Mm.447887	NR_033548	ENSMUSG00000085886	D030047H15Rik	Gm15924	RIKEN cDNA D030047H15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-55718864-4	chr17	55718304	55719304	+	941.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-6168.0	NR_151542	72836.0	Mm.177073	NM_028370	ENSMUSG00000024174	Pot1b	2810458H16Rik	protection of telomeres 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25776071-2	chr17	25775571	25776571	+	941.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026238, intron 2 of 10)	intron (NM_026238, intron 2 of 10)	2295.0	NM_026238	67563.0	Mm.24201	NM_026238	ENSMUSG00000002280	Narfl	9030612I22Rik|AI504405|PRN	nuclear prelamin A recognition factor-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95563702-4	chr10	95563199	95564199	+	941.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027722, exon 1 of 5)	exon (NM_027722, exon 1 of 5)	447.0	NM_027722	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70466872-4	chr11	70466433	70467433	+	941.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001348337)	TTS (NM_001348337)	-6949.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-70095979-2	chr10	70095479	70096479	+	941.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1142.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-31635438-2	chr12	31634938	31635938	+	941.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164090)	promoter-TSS (NM_001164090)	-780.0	NM_001164090	12033.0	Mm.242379	NM_007530	ENSMUSG00000020650	Bcap29	AW208404|Bap29	B cell receptor associated protein 29	protein-coding	13.0	26.0	9.0	13.0	25.5	9.5
Merged-chr10-18953743-2	chr10	18953243	18954243	+	941.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58220.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80705464-2	chr15	80704964	80705964	+	941.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(GAA)n|Simple_repeat|Simple_repeat	-5849.0	NM_144812	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124424882-4	chr5	124424390	124425390	+	941.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081203, intron 1 of 31)	CpG	712.0	NM_001359979	243272.0	Mm.23879	NM_145631	ENSMUSG00000038095	Sbno1	9330180L10Rik|AI849128|AW557836|BC021875|Sbno|mSno1|sno	strawberry notch 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116646050-2	chr11	116645550	116646550	+	941.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_030206, exon 4 of 4)	3' UTR (NM_030206, exon 4 of 4)	8263.0	NM_030206	114886.0	Mm.34598	NM_030206	ENSMUSG00000020810	Cygb	3110001K20Rik|HGb|Staap	cytoglobin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3197305-2	chr5	3196805	3197805	+	941.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-146588.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89210955-3	chr3	89210456	89211456	+	941.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357367, intron 2 of 6)	intron (NM_001357367, intron 2 of 6)	3379.0	NM_013604	17827.0	Mm.280943	NM_013604	ENSMUSG00000064068	Mtx1	Gcap6|Mtx	metaxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59185175-2	chr4	59184675	59185675	+	941.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-4375.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr8-120540234-4	chr8	120539731	120540731	+	941.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 1 of 15)	intron (NM_001145896, intron 1 of 15)	1535.0	NR_106159	102466849.0		NR_106159	ENSMUSG00000098280	Mir7687	Gm27573|mmu-mir-7687	microRNA 7687	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29386520-2	chr17	29386020	29387020	+	941.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	25606.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	4.5	6.0	1.0	5.0	2.5	4.5
Merged-chr6-87748180-2	chr6	87747680	87748680	+	941.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159697, intron 2 of 7)	intron (NM_001159697, intron 2 of 7)	17311.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	0.0	0.0	0.5	4.5	0.0	1.0
Merged-chr7-135670835-2	chr7	135670335	135671335	+	941.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001316678, exon 13 of 20)	exon (NM_001316678, exon 13 of 20)	-18521.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81327211-2	chr7	81326711	81327711	+	941.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 19 of 21)	intron (NM_008803, intron 19 of 21)	18023.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-81780268-2	chr12	81779768	81780768	+	941.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001174107, intron 1 of 10)	intron (NM_001174107, intron 1 of 10)	902.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76503290-2	chr11	76502790	76503790	+	941.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198018, intron 1 of 21)	intron (NM_198018, intron 1 of 21)	6129.0	NM_198018	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	3.0	0.0	0.5	0.0	0.0	0.0
Merged-chr4-135352655-4	chr4	135352130	135353130	+	941.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016799, intron 1 of 17)	CpG	584.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20379760-3	chr13	20379259	20380259	+	941.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 15 of 21)	intron (NM_080288, intron 15 of 21)	-93231.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.0	1.0	1.5	0.0	4.0	1.5
Merged-chr12-17772764-2	chr12	17772264	17773264	+	941.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361645, intron 2 of 4)	intron (NM_001361645, intron 2 of 4)	81955.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	6.5	8.5	9.0	1.0	12.0	8.0
Merged-chr6-100144898-2	chr6	100144398	100145398	+	941.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16C|LTR|ERVL	142460.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49839727-2	chr16	49839227	49840227	+	941.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15927.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131239718-5	chr2	131239197	131240197	+	941.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206382, intron 3 of 7)	PB1D10|SINE|Alu	5634.0	NM_144888	228607.0	Mm.287226	NM_144888	ENSMUSG00000037523	Mavs	D430028G21Rik|IPS-1|Visa|cardif	mitochondrial antiviral signaling protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88084723-7	chr6	88084216	88085216	+	941.460327	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133933, exon 1 of 10)	exon (NM_133933, exon 1 of 10)	243.0	NM_133933	103963.0	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58758398-4	chr15	58757903	58758903	+	941.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65024.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-13046305-4	chr7	13045798	13046798	+	941.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290453, intron 5 of 6)	intron (NM_001290453, intron 5 of 6)	-8023.0	NM_001168469	22192.0	Mm.196580	NM_145578	ENSMUSG00000005575	Ube2m	2510040H03Rik|UBC12|Ubc-rs2	ubiquitin-conjugating enzyme E2M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-151981536-4	chr4	151981040	151982040	+	941.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172704, exon 16 of 16)	3' UTR (NM_172704, exon 16 of 16)	7446.0	NM_175152	69876.0	Mm.226820	NM_175152	ENSMUSG00000039759	Thap3	2010013E08Rik|2210418H06Rik	THAP domain containing, apoptosis associated protein 3	protein-coding	0.5	2.5	10.0	0.0	2.0	2.5
Merged-chr3-88651823-4	chr3	88651304	88652304	+	941.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_181817)	TTS (NM_181817)	1338.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5397626-4	chr17	5397120	5398120	+	941.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21147.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83271635-4	chr17	83271092	83272092	+	941.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	56309.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144217441-4	chr2	144216942	144217942	+	941.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28152.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-47235025-4	chr4	47234536	47235536	+	941.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 2 of 39)	intron (NM_009928, intron 2 of 39)	27024.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124279123-3	chr6	124278627	124279627	+	941.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25524.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-5375738-3	chr12	5375237	5376237	+	941.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015579)	promoter-TSS (NR_015579)	-55.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113115451-3	chr12	113114917	113115917	+	941.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346696, intron 2 of 19)	MTE2a|LTR|ERVL-MaLR	17139.0	NM_054081	116870.0	Mm.212577	NM_054081	ENSMUSG00000021144	Mta1	-	metastasis associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86416071-3	chr1	86415582	86416582	+	941.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10247.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38478579-3	chr6	38478061	38479061	+	941.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177185, intron 7 of 16)	intron (NM_177185, intron 7 of 16)	-28764.0	NR_106130	102466843.0		NR_106130	ENSMUSG00000098285	Mir7670	Gm27707|mmu-mir-7670	microRNA 7670	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52491440-3	chr6	52490973	52491973	+	941.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046049)	promoter-TSS (NR_046049)	-978.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-41039038-4	chr3	41038536	41039536	+	941.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44010.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98181515-4	chr15	98181004	98182004	+	941.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13698.0	NM_177716	239650.0	Mm.54140	NM_177716	ENSMUSG00000029875	Ccdc184	5630400A08|AI836003	coiled-coil domain containing 184	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166261989-4	chr2	166261460	166262460	+	941.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11948.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23821126-4	chr11	23820634	23821634	+	941.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50164.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-41122910-4	chr9	41122397	41123397	+	941.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	MIR3|SINE|MIR	35165.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	6.0	2.5	9.5	6.0	20.5	11.0
Merged-chr5-33274028-2	chr5	33273578	33274578	+	941.400024	f0_balb.idr|f0_c57.idr	intron (NM_001198860, intron 1 of 9)	intron (NM_001198860, intron 1 of 9)	926.0	NM_001310535	13016.0	Mm.7286	NM_013502	ENSMUSG00000037373	Ctbp1	BARS|CtBP3/BARS|D4S115h|D5H4S115|D5H4S115E	C-terminal binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8991675-3	chr19	8991259	8992259	+	941.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039959, intron 1 of 5)	intron (NM_001039959, intron 1 of 5)	2475.0	NM_001286518	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90373627-3	chr3	90373121	90374121	+	941.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16317.0	NM_001316688	26568.0	Mm.45519	NM_011988	ENSMUSG00000027932	Slc27a3	Acsvl3|FATP-3|FATP3|Vlcs-3	solute carrier family 27 (fatty acid transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40643455-4	chr10	40642951	40643951	+	941.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133568, intron 3 of 4)	MTC|LTR|ERVL-MaLR	13440.0	NR_133568	70503.0	Mm.252862	NM_027442	ENSMUSG00000063428	Ddo	5330420D20Rik|5730402C02Rik|AI467244	D-aspartate oxidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51719210-4	chr3	51718700	51719700	+	941.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	58021.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19360546-4	chr7	19360049	19361049	+	941.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001010836)	promoter-TSS (NM_001010836)	-667.0	NM_001010836	333654.0	Mm.333640	NM_001010836	ENSMUSG00000040734	Ppp1r13l	AV260376|IASPP|Nkip1|wa3	protein phosphatase 1, regulatory (inhibitor) subunit 13 like	protein-coding	3.0	13.0	3.0	3.0	13.5	12.5
Merged-chr17-26234679-4	chr17	26234175	26235175	+	941.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	B2_Mm2|SINE|B2	9567.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-41300481-3	chr12	41299977	41300977	+	941.3666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	185580.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-192745666-4	chr1	192745153	192746153	+	941.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 3 of 11)	U5|snRNA|snRNA	25566.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	18.5	38.5	16.0	4.5	16.0	12.5
Merged-chr12-69473115-4	chr12	69472600	69473600	+	941.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038060, intron 2 of 4)	intron (NR_038060, intron 2 of 4)	2450.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121082430-4	chr11	121081921	121082921	+	941.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1282.0	NM_145373	209588.0	Mm.69553	NM_145373	ENSMUSG00000025165	Sectm1a	BC010462	secreted and transmembrane 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91645123-2	chr16	91644623	91645623	+	941.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010256, intron 1 of 21)	B1F2|SINE|Alu	1849.0	NM_010256	14450.0	Mm.4505	NM_010256	ENSMUSG00000022962	Gart	Gaps|Prgs	phosphoribosylglycinamide formyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104271884-4	chr9	104271365	104272365	+	941.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8935.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-89866690-3	chr16	89866187	89867187	+	941.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 7 of 27)	intron (NM_009384, intron 7 of 27)	-48335.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87447633-2	chr11	87447133	87448133	+	941.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	20042.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10093633-4	chr17	10093135	10094135	+	941.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	225726.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118175712-3	chr7	118175224	118176224	+	941.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001031814, intron 29 of 62)	L1ME1|LINE|L1	-46099.0	NM_019419	54208.0	Mm.29924	NM_019419	ENSMUSG00000030654	Arl6ip1	AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding	0.5	6.5	7.5	8.0	1.5	3.5
Merged-chr5-123915306-2	chr5	123914806	123915806	+	941.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_026603, intron 3 of 7)	intron (NM_026603, intron 3 of 7)	8031.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	4.0	1.0	1.5	3.0	2.0	4.0
Merged-chr6-65614440-4	chr6	65613921	65614921	+	941.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001495, intron 6 of 7)	MTD|LTR|ERVL-MaLR	24023.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-73019529-4	chr11	73019030	73020030	+	941.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152202)	promoter-TSS (NR_152202)	522.0	NM_018883	55984.0	Mm.9998	NM_018883	ENSMUSG00000020785	Camkk1	AI846603|CaMKKalpha|Camkk	calcium/calmodulin-dependent protein kinase kinase 1, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-115712982-4	chr3	115712489	115713489	+	941.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007901, exon 2 of 2)	5' UTR (NM_007901, exon 2 of 2)	2066.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.0	1.0	2.0	0.0	1.0	2.0
Merged-chr1-54810459-5	chr1	54810043	54811043	+	941.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 2 of 27)	intron (NM_001081433, intron 2 of 27)	115844.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	10.0	35.0	30.5	22.5	52.5	44.0
Merged-chr11-85684492-2	chr11	85683992	85684992	+	941.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	35252.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21986174-4	chr14	21985687	21986687	+	941.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145459, exon 3 of 3)	exon (NM_145459, exon 3 of 3)	3414.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-86296269-4	chr10	86295618	86296618	+	941.28125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164495, intron 6 of 6)	intron (NM_001164495, intron 6 of 6)	-4294.0	NM_011595	21859.0	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.0	1.0	7.0	1.0	6.0	1.0
Merged-chr17-31834857-3	chr17	31834366	31835366	+	941.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	20938.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	12.0	36.0	17.5	0.0	3.0	2.0
Merged-chr17-67585407-3	chr17	67584873	67585873	+	941.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155516, intron 2 of 2)	intron (NR_155516, intron 2 of 2)	43959.0	NR_155516	102640031.0	Mm.421441	NR_155516		Gm36201	-	predicted gene, 36201	ncRNA	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr16-81200654-6	chr16	81200084	81201084	+	941.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010954)	promoter-TSS (NM_010954)	-113.0	NM_001113208	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120077183-3	chr6	120076688	120077688	+	941.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR33|LTR|ERVK	-16192.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.0	0.0	3.5	4.0	0.0	5.0
Merged-chr6-115367459-4	chr6	115366972	115367972	+	941.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 1 of 7)	intron (NM_001308354, intron 1 of 7)	5123.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-104286051-4	chr13	104285525	104286525	+	941.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1810.0	NR_136938	108154.0	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29006338-2	chr7	29005913	29006913	+	941.25	f0_balb.idr|f1_balb.idr	intron (NM_009109, intron 101 of 105)	MTEa|LTR|ERVL-MaLR	23559.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	4.0	8.5	8.5	1.5	21.0	14.5
Merged-chr5-99365375-4	chr5	99364819	99365819	+	941.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-112392.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-70150907-4	chr10	70150392	70151392	+	941.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111121, intron 2 of 8)	intron (NM_001111121, intron 2 of 8)	53771.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96728439-4	chr3	96727938	96728938	+	941.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028925)	promoter-TSS (NM_028925)	827.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34238092-2	chr13	34237592	34238592	+	941.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	75128.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	5.0	8.5	16.0	12.0	7.0	11.0
Merged-chr4-133493962-4	chr4	133493483	133494483	+	941.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081156, intron 1 of 1)	intron (NM_001081156, intron 1 of 1)	4567.0	NM_001081156	69539.0	Mm.151594	NM_001081156	ENSMUSG00000056596	Trnp1	2300002D11Rik|Trnp	TMF1-regulated nuclear protein 1	protein-coding	37.0	86.5	46.0	60.0	123.5	58.5
Merged-chr11-118446057-4	chr11	118445568	118446568	+	941.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045902, intron 2 of 2)	intron (NR_045902, intron 2 of 2)	2534.0	NM_001204130	56745.0	Mm.23845	NM_019959	ENSMUSG00000017446	C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-138966496-4	chr3	138965998	138966998	+	941.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 4 of 13)	intron (NM_001356388, intron 4 of 13)	108703.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	0.0	5.5	4.5	3.5	4.5	3.0
Merged-chr8-70856984-4	chr8	70856441	70857441	+	941.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_032397)	promoter-TSS (NM_032397)	67.0	NM_032397	84036.0	Mm.32074	NM_032397	ENSMUSG00000002908	Kcnn1	AI854248|KCa2.1|SK1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	protein-coding	0.5	5.0	1.0	9.5	0.0	7.5
Merged-chr1-131549207-3	chr1	131548701	131549701	+	941.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21298.0	NM_175382	108900.0	Mm.31278	NM_175382	ENSMUSG00000055184	Fam72a	2700049P18Rik|P17	family with sequence similarity 72, member A	protein-coding	3.0	0.0	2.0	1.0	6.5	1.5
Merged-chr6-87205681-3	chr6	87205203	87206203	+	941.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054041, intron 13 of 17)	intron (NM_054041, intron 13 of 17)	100957.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	1.5	0.0	0.5	6.5	0.0	0.0
Merged-chr15-73505964-3	chr15	73505470	73506470	+	941.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6590.0	NR_152151	105841.0	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106820756-3	chr8	106820249	106821249	+	941.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173037, intron 17 of 17)	B3A|SINE|B2	-49493.0	NM_008217	15118.0	Mm.56986	NM_008217	ENSMUSG00000031910	Has3	-	hyaluronan synthase 3	protein-coding	26.5	38.5	36.5	19.0	5.5	5.0
Merged-chr1-78484618-3	chr1	78484109	78485109	+	941.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001278075, intron 1 of 17)	MLT1F2|LTR|ERVL-MaLR	4288.0	NR_102758	23874.0	Mm.17898	NM_011811	ENSMUSG00000026245	Farsb	C76708|Farsa|Farsl|Farslb|Frsb	phenylalanyl-tRNA synthetase, beta subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8072727-4	chr10	8072194	8073194	+	941.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER31B|LTR|ERV1	-116571.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	13.5	20.5	32.5	22.5	9.0	17.5
Merged-chr10-54040704-7	chr10	54040219	54041219	+	941.214294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 2 of 12)	intron (NM_008548, intron 2 of 12)	35077.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3529913-4	chr4	3529418	3530418	+	941.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7172.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	9.0	10.5	10.0	2.0	28.5	1.5
Merged-chr11-79307207-4	chr11	79306701	79307701	+	941.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32691.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65558405-4	chr17	65557909	65558909	+	941.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17627.0	NM_001289486	381107.0	Mm.141275	NM_001008973	ENSMUSG00000045036	Tmem232	E130009J12Rik|Gm940|Tes13-L|Tes13-S	transmembrane protein 232	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113918215-4	chr13	113917714	113918714	+	941.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	123706.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96244789-3	chr3	96244293	96245293	+	941.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013549)	promoter-TSS (NM_013549)	-664.0	NM_178212	319192.0	Mm.5220	NM_178212	ENSMUSG00000063954	Hist2h2aa2	H2a-614|H2a-615	histone cluster 2, H2aa2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111994431-5	chr10	111993929	111994929	+	941.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028608, intron 1 of 5)	L1MA7|LINE|L1	2835.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31392053-8	chr14	31391549	31392549	+	941.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	ID_B1|SINE|B4	25628.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65538586-3	chr3	65538087	65539087	+	941.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178892, intron 2 of 5)	intron (NM_178892, intron 2 of 5)	-9173.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	2.5	0.0	2.0	0.0	3.5	0.5
Merged-chr7-130819022-4	chr7	130818533	130819533	+	941.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081038, exon 12 of 16)	exon (NM_001081038, exon 12 of 16)	44964.0	NM_001081038	330660.0	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88539042-3	chr15	88538561	88539561	+	941.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61241.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-47023730-4	chr7	47023212	47024212	+	941.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15298.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90460158-2	chr2	90459658	90460658	+	941.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 8 of 23)	intron (NM_008982, intron 8 of 23)	19016.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-101777008-2	chr2	101776500	101777500	+	941.166626	f0_c57.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	MIRb|SINE|MIR	20707.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	37.5	72.0	27.5	6.5	12.0	6.5
Merged-chr6-129369919-4	chr6	129369432	129370432	+	941.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	15571.0	NM_027709	71183.0	Mm.79402	NM_027709	ENSMUSG00000030158	Clec12b	4933425B16Rik	C-type lectin domain family 12, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76239260-4	chr15	76238772	76239772	+	941.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163576, intron 8 of 9)	intron (NM_001163576, intron 8 of 9)	4168.0	NM_001163576	671535.0	Mm.373750	NM_001163575	ENSMUSG00000063268	Parp10	-	poly (ADP-ribose) polymerase family, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119817706-4	chr8	119817220	119818220	+	941.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 3 of 3)	(ACCTG)n|Simple_repeat|Simple_repeat	22859.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-64792764-4	chr14	64792259	64793259	+	941.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081177, intron 37 of 39)	MTC|LTR|ERVL-MaLR	140228.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	1.0	0.0	0.5	1.0	0.0	0.5
Merged-chr1-151683200-4	chr1	151682679	151683679	+	941.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 5 of 13)	intron (NM_022018, intron 5 of 13)	71548.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24131650-4	chr10	24131137	24132137	+	941.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17652.0	NM_001358563	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-64515723-5	chr18	64515153	64516153	+	941.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142950, intron 1 of 14)	intron (NM_001142950, intron 1 of 14)	904.0	NM_027350	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3341533-8	chr5	3340905	3341905	+	941.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2488.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-26205724-4	chr6	26205233	26206233	+	941.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	274307.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-89243907-3	chr7	89243421	89244421	+	941.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001360745, exon 4 of 14)	exon (NM_001360745, exon 4 of 14)	94866.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-12140288-4	chr4	12139786	12140786	+	941.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028226, exon 1 of 3)	5' UTR (NM_028226, exon 1 of 3)	169.0	NM_028226	72397.0	Mm.430709	NM_028226	ENSMUSG00000046667	Rbm12b1	3000004N20Rik|Rbm12b|Rbm12ba	RNA binding motif protein 12 B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31637204-4	chr17	31636526	31637526	+	941.0576169999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178224, intron 1 of 15)	CpG	179.0	NM_144855	12411.0	Mm.206417	NM_144855	ENSMUSG00000024039	Cbs	AI047524|AI303044|HIP4	cystathionine beta-synthase	protein-coding	0.0	0.0	0.5	0.0	5.0	0.0
Merged-chr16-21474837-3	chr16	21474343	21475343	+	941.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 15 of 46)	intron (NM_001081366, intron 15 of 46)	51725.0	NM_001285894	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155840463-3	chr4	155839918	155840918	+	941.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024263, intron 1 of 9)	intron (NM_024263, intron 1 of 9)	738.0	NM_024263	74761.0	Mm.159028	NM_024263	ENSMUSG00000029070	Mxra8	1200013A08Rik|1700095D18Rik|AI131686|Asp3|Dicam	matrix-remodelling associated 8	protein-coding	9.0	10.0	5.5	44.5	85.0	55.0
Merged-chr13-41603579-4	chr13	41603059	41604059	+	941.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2657.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-174077349-4	chr2	174076833	174077833	+	941.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102423, intron 1 of 7)	intron (NM_001102423, intron 1 of 7)	282.0	NM_001102423	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76309689-4	chr15	76309199	76310199	+	941.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2454.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-110561194-4	chr13	110560739	110561739	+	941.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	166195.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0.0	0.5	0.0	0.0	0.5	3.0
Merged-chr9-78340441-2	chr9	78339941	78340941	+	941.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008182, intron 2 of 6)	intron (NM_008182, intron 2 of 6)	6704.0	NM_008182	14858.0	Mm.422778	NM_008182	ENSMUSG00000057933	Gsta2	Gst2-2|Gstc-2|Gstc2	glutathione S-transferase, alpha 2 (Yc2)	protein-coding	3.0	0.0	2.0	2.5	0.0	2.0
Merged-chr2-155541261-4	chr2	155540739	155541739	+	941.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019811, intron 2 of 17)	MIRc|SINE|MIR	15691.0	NR_040613	74945.0	Mm.401956	NR_040613	ENSMUSG00000086529	Acss2os	4930471I20Rik	acyl-CoA synthetase short-chain family member 2, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138125895-1	chr4	138125395	138126395	+	941.0	f1_c57bl6.idr	exon (NM_172703, exon 12 of 35)	exon (NM_172703, exon 12 of 35)	12623.0	NR_126429	73563.0	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	13.5	1.5	8.0	4.0	21.5	12.0
Merged-chr4-35950138-3	chr4	35949633	35950633	+	941.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166000, intron 7 of 8)	MLT1G1|LTR|ERVL-MaLR	-104929.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108634307-2	chr12	108633807	108634807	+	941.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163395, intron 1 of 12)	intron (NM_001163395, intron 1 of 12)	-1446.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81021127-2	chr15	81020627	81021627	+	941.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 6 of 13)	intron (NM_001082536, intron 6 of 13)	43362.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0.0	0.0	7.5	0.0	0.0	3.0
Merged-chr2-6476919-4	chr2	6476412	6477412	+	941.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	124176.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-13370580-4	chr1	13370087	13371087	+	941.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	1842.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	7.5	5.5	1.0	0.0	5.5	0.5
Merged-chr18-62182125-1	chr18	62181625	62182625	+	941.0	f0_balb.idr	intron (NM_001013754, intron 1 of 1)	intron (NM_001013754, intron 1 of 1)	2025.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	16.0	132.0	72.5	21.0	142.0	67.0
Merged-chr15-29417339-2	chr15	29416839	29417839	+	941.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	296065.0	NR_039542	100628607.0		NR_039542	ENSMUSG00000092639	Mir3964	mmu-mir-3964|mu-mir-3964	microRNA 3964	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60748773-2	chr10	60748273	60749273	+	941.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 2 of 5)	intron (NM_023596, intron 2 of 5)	4009.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-91186487-4	chr15	91186063	91187063	+	941.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358967, intron 2 of 9)	intron (NM_001358967, intron 2 of 9)	5444.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59184047-1	chr11	59183547	59184547	+	941.0	f1_c57bl6.idr	promoter-TSS (NM_080454)	promoter-TSS (NM_080454)	-834.0	NM_080454	118454.0	Mm.40016	NM_080454	ENSMUSG00000043448	Gjc2	B230382L12Rik|Cx47|Gja12	gap junction protein, gamma 2	protein-coding	3.0	9.0	5.5	0.5	2.5	1.5
Merged-chr5-20943743-6	chr5	20943222	20944222	+	941.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080977, intron 1 of 7)	intron (NM_001080977, intron 1 of 7)	-7267.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54116447-4	chr6	54115940	54116940	+	941.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	L3|LINE|CR1	76508.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	46.5	95.5	69.5	31.0	63.5	54.0
Merged-chr11-121203447-2	chr11	121202963	121203963	+	941.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001333)	promoter-TSS (NM_001001333)	-970.0	NM_001001333	238023.0	Mm.275130	NM_001001333	ENSMUSG00000039307	Hexdc	BC069960	hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing	protein-coding	2.5	0.0	5.5	12.5	0.0	1.5
Merged-chr4-126883748-4	chr4	126883236	126884236	+	941.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114399, intron 23 of 29)	intron (NM_001114399, intron 23 of 29)	84187.0	NM_001357201	67785.0	Mm.165401	NM_001114399	ENSMUSG00000042446	Zmym4	6330503C17Rik|AI480785|AW493829|CDIR|D630001M21|MYM|Zfp262|Znf262|mKIAA0425	zinc finger, MYM-type 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-107923043-4	chr5	107922539	107923539	+	941.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 2 of 4)	intron (NM_026062, intron 2 of 4)	22511.0	NM_016980	100503670.0	Mm.277897	NM_016980	ENSMUSG00000058558	Rpl5	U21RNA	ribosomal protein L5	protein-coding	2.5	27.0	10.0	14.0	27.0	7.5
Merged-chr17-56476106-1	chr17	56475606	56476606	+	941.0	f0_c57.idr	intron (NM_001252455, intron 1 of 27)	CpG	374.0	NM_001252455	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73014900-2	chr15	73014400	73015400	+	941.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029640, intron 6 of 21)	intron (NM_029640, intron 6 of 21)	40912.0	NM_029640	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-58703481-2	chr2	58702981	58703981	+	941.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289660, intron 1 of 7)	intron (NM_001289660, intron 1 of 7)	-51703.0	NM_001289659	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40811764-2	chr10	40811264	40812264	+	941.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177793)	TTS (NM_177793)	71379.0	NM_027879	71713.0	Mm.46063	NM_027879	ENSMUSG00000038446	Cdc40	1200003H23Rik|EHB3|PRP17	cell division cycle 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35291847-2	chr2	35291347	35292347	+	941.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001206368, intron 4 of 16)	MTD|LTR|ERVL-MaLR	9467.0	NM_146120	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	0.0	2.0	0.0	0.0	2.0	0.0
Merged-chr7-35142877-2	chr7	35142377	35143377	+	941.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23584.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19001334-1	chr10	19000834	19001834	+	941.0	f1_c57bl6.idr	3' UTR (NM_009397, exon 9 of 9)	3' UTR (NM_009397, exon 9 of 9)	10629.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	4.5	3.0	4.0	0.5	7.5	1.5
Merged-chr4-32121710-1	chr4	32121210	32122210	+	941.0	f1_balb.idr	Intergenic	RMER1A|Other|Other	157603.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	6.0	1.5	2.0	1.0	0.0	2.0
Merged-chr3-135601179-1	chr3	135600679	135601679	+	941.0	f1_c57bl6.idr	intron (NM_008689, intron 17 of 24)	intron (NM_008689, intron 17 of 24)	90368.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	13.0	0.0	1.0	10.0	0.0	0.0
Merged-chr11-114676585-4	chr11	114676173	114677173	+	941.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	1205.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36282111-3	chr15	36281600	36282600	+	941.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357631, intron 1 of 7)	intron (NM_001357631, intron 1 of 7)	1047.0	NM_013923	30945.0	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145026769-3	chr4	145026277	145027277	+	941.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 65 of 69)	intron (NM_001276465, intron 65 of 69)	133640.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102427288-2	chr11	102426788	102427788	+	941.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-3034.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6476108-3	chr17	6475605	6476605	+	941.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25111.0	NR_033520	547127.0	Mm.297552	NM_001045538		Tmem181b-ps	Tmem181b	transmembrane protein 181B, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109252435-2	chr3	109251935	109252935	+	941.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-88248.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	3.5	18.0	12.5	10.5	4.0	15.0
Merged-chr7-106551294-6	chr7	106550775	106551775	+	941.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	93370.0	NM_001277179	434223.0	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	15.5	38.5	19.0	75.5	168.0	145.5
Merged-chr6-28483840-2	chr6	28483340	28484340	+	941.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 1 of 23)	intron (NM_019776, intron 1 of 23)	3492.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150828733-3	chr2	150828239	150829239	+	941.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153781, intron 18 of 19)	intron (NM_153781, intron 18 of 19)	13831.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-73436759-3	chr6	73436280	73437280	+	941.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_108032)	TTS (NR_108032)	32887.0	NM_025737	66740.0	Mm.440760	NM_025737	ENSMUSG00000056197	4931417E11Rik	-	RIKEN cDNA 4931417E11 gene	protein-coding	15.0	9.5	12.5	3.5	7.0	3.5
Merged-chr8-61913088-2	chr8	61912588	61913588	+	941.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-10394.0	NM_001293772	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41323979-4	chr19	41323467	41324467	+	940.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 7 of 16)	MIR|SINE|MIR	-59963.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26687222-4	chr8	26686732	26687732	+	940.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137191.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-51833039-4	chr17	51832508	51833508	+	940.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009122)	promoter-TSS (NM_009122)	282.0	NM_001163632	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.0	0.0	6.0	0.0	0.0	0.0
Merged-chr11-69605977-4	chr11	69605492	69606492	+	940.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013415)	promoter-TSS (NM_013415)	-32.0	NM_013415	11932.0	Mm.235204	NM_013415	ENSMUSG00000041329	Atp1b2	Amog|Atpb-2	ATPase, Na+/K+ transporting, beta 2 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108694280-4	chr9	108693814	108694814	+	940.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008924, intron 1 of 10)	L1M4|LINE|L1	2171.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-34430779-3	chr4	34430249	34431249	+	940.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119866.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-14587410-3	chr19	14586896	14587896	+	940.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302951, intron 4 of 19)	intron (NM_001302951, intron 4 of 19)	9817.0	NM_001302951	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34259155-3	chr17	34258568	34259568	+	940.93335	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4159.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.0	8.5	6.0	0.5	13.5	7.0
Merged-chr10-37359241-5	chr10	37358830	37359830	+	940.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-220404.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59774214-3	chr15	59773705	59774705	+	940.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20754.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10967138-4	chr16	10966630	10967630	+	940.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	25991.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-24682097-4	chr1	24681594	24682594	+	940.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310483, intron 1 of 15)	MTC|LTR|ERVL-MaLR	3176.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34654133-2	chr17	34653633	34654633	+	940.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_017406, intron 17 of 17)	intron (NM_017406, intron 17 of 17)	6987.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	4.0	4.0	0.0	4.0	2.0	0.5
Merged-chr7-128209903-4	chr7	128209406	128210406	+	940.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3540.0	NM_009943	12862.0	Mm.43824	NM_009943	ENSMUSG00000030785	Cox6a2	CoxVIaH|VIaH	cytochrome c oxidase subunit VIa polypeptide 2	protein-coding	1.5	0.5	3.0	6.0	0.0	2.0
Merged-chr13-51741023-4	chr13	51740528	51741528	+	940.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281880, intron 2 of 16)	intron (NM_001281880, intron 2 of 16)	52719.0	NM_001281880	20354.0	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-99522153-4	chr6	99521652	99522652	+	940.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-12329	-1159.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97034387-3	chr7	97033887	97034887	+	940.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153591, intron 9 of 13)	L2a|LINE|L2	-47364.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	1.0	11.5	3.0	0.0	14.0	4.0
Merged-chr1-60621982-3	chr1	60621483	60622483	+	940.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55218.0	NM_001045513	77300.0	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	3.5	9.5	5.0	3.5	9.5	5.0
Merged-chr15-75090025-3	chr15	75089533	75090533	+	940.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21904.0	NM_001357693	100041546.0	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	0.0	27.0	1.5	1.5	3.0	0.0
Merged-chr15-79038053-4	chr15	79037545	79038545	+	940.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013847, exon 9 of 9)	3' UTR (NM_013847, exon 9 of 9)	-3840.0	NM_015738	14429.0	Mm.390805	NM_015738	ENSMUSG00000114755	Galr3	Galnr3	galanin receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-70478006-4	chr18	70477474	70478474	+	940.854126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289650, intron 5 of 8)	intron (NM_001289650, intron 5 of 8)	5308.0	NM_001289650	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	15.5	8.0	5.0	1.5	4.5	6.0
Merged-chr13-60742588-2	chr13	60742088	60743088	+	940.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 19 of 26)	intron (NM_134062, intron 19 of 26)	43776.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45416116-2	chr9	45415616	45416616	+	940.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NR_040732)	TTS (NR_040732)	10039.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	3.5	4.5	1.5	3.5	4.5	3.0
Merged-chr12-71886007-2	chr12	71885507	71886507	+	940.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026102, intron 1 of 25)	intron (NM_026102, intron 1 of 25)	-3536.0	NM_001286452	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	0.0	0.0	0.0	0.0	6.0	0.0
Merged-chr5-112277733-2	chr5	112277275	112278275	+	940.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	(TG)n|Simple_repeat|Simple_repeat	1084.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	5.5	7.5	10.5	4.5	9.0	10.5
Merged-chr10-62602860-4	chr10	62602376	62603376	+	940.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019553)	promoter-TSS (NM_019553)	-578.0	NM_019553	56200.0	Mm.413275	NM_019553	ENSMUSG00000020075	Ddx21	AI255159|AL022742|D10Ertd645e|D10Wsu42e	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106223241-4	chr9	106222750	106223750	+	940.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031178, intron 1 of 1)	intron (NM_031178, intron 1 of 1)	652.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	60.5	192.5	158.5	81.5	208.5	133.0
Merged-chr3-144498536-3	chr3	144498051	144499051	+	940.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355234, intron 1 of 6)	intron (NM_001355234, intron 1 of 6)	71665.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84675860-3	chr3	84675358	84676358	+	940.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177260, intron 1 of 6)	intron (NM_177260, intron 1 of 6)	9666.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-14784432-6	chr9	14783855	14784855	+	940.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310728)	promoter-TSS (NM_001310728)	218.0	NM_019683	56503.0	Mm.272618	NM_019683	ENSMUSG00000031931	Ankrd49	AW060934|C86108|Gbif	ankyrin repeat domain 49	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-169934565-4	chr2	169934073	169935073	+	940.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28614.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	0.0	0.0	0.5	0.0	2.0	1.0
Merged-chr19-7268134-4	chr19	7267610	7268610	+	940.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001320554)	promoter-TSS (NM_001320554)	-169.0	NM_001320554	104383.0	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90018695-4	chr7	90018177	90019177	+	940.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B1|LTR|ERVK	-10482.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	72.5	166.5	98.5	67.0	201.0	107.0
Merged-chr5-123150332-4	chr5	123149781	123150781	+	940.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040398, intron 6 of 16)	intron (NM_001040398, intron 6 of 16)	8088.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	9.5	6.0	4.5	11.0	9.0	2.0
Merged-chr13-30750671-4	chr13	30750187	30751187	+	940.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013674, exon 2 of 9)	exon (NM_013674, exon 2 of 9)	1454.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99235133-4	chr5	99234626	99235626	+	940.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145839, intron 4 of 13)	intron (NM_145839, intron 4 of 13)	17801.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-63948593-4	chr11	63948095	63949095	+	940.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-15631.0	NR_131111	78883.0	Mm.410764	NR_131111	ENSMUSG00000086359	9630013K17Rik	-	RIKEN cDNA 9630013K17 gene	ncRNA	0.0	0.0	0.0	2.5	1.0	0.5
Merged-chr6-98575461-4	chr6	98574971	98575971	+	940.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-232717.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72281800-4	chr8	72281287	72282287	+	940.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37275.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	1.0	1.0	1.0	0.5	5.0	0.5
Merged-chr15-68239281-2	chr15	68238781	68239781	+	940.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_152182, intron 1 of 13)	intron (NR_152182, intron 1 of 13)	19575.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	2.5	0.0	3.0	0.0	0.0	0.5
Merged-chr17-31040707-4	chr17	31040222	31041222	+	940.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16972.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	12.5	4.0	15.5	11.5	13.5	13.0
Merged-chr11-89025247-2	chr11	89024747	89025747	+	940.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	25844.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	241.5	445.5	390.0	178.5	440.5	298.5
Merged-chr4-147943124-2	chr4	147942624	147943624	+	940.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_029841, intron 1 of 2)	intron (NM_029841, intron 1 of 2)	2229.0	NM_029841	77034.0	Mm.183076	NM_029841	ENSMUSG00000044496	2510039O18Rik	Kiaa2013	RIKEN cDNA 2510039O18 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50761760-4	chr15	50761260	50762260	+	940.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	127289.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	8.0	8.0	16.5	1.0	7.5	3.0
Merged-chr2-32744827-4	chr2	32744352	32745352	+	940.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001252547, exon 3 of 11)	exon (NM_001252547, exon 3 of 11)	-3836.0	NM_027529	70730.0	Mm.401360	NM_027529	ENSMUSG00000009551	6330409D20Rik	AA517851	RIKEN cDNA 6330409D20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3358124-4	chr2	3357632	3358632	+	940.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145921, intron 3 of 7)	intron (NM_145921, intron 3 of 7)	8437.0	NM_145921	99035.0	Mm.13808	NM_145921	ENSMUSG00000026645	Olah	AI607300|E230009B14Rik|Thedc1	oleoyl-ACP hydrolase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94417886-4	chr10	94417393	94418393	+	940.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	-96964.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70791024-2	chr8	70790524	70791524	+	940.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_199308, intron 1 of 25)	intron (NM_199308, intron 1 of 25)	1409.0	NM_199308	546071.0	Mm.250731	NM_199308	ENSMUSG00000031833	Mast3	BC024265|mKIAA0561	microtubule associated serine/threonine kinase 3	protein-coding	8.0	22.0	28.5	6.5	11.0	22.0
Merged-chr1-71100332-4	chr1	71099748	71100748	+	940.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007525, intron 1 of 10)	intron (NM_007525, intron 1 of 10)	2724.0	NM_007525	12021.0	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	-	BRCA1 associated RING domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135427597-4	chr1	135427090	135428090	+	940.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357578, intron 1 of 24)	intron (NM_001357578, intron 1 of 24)	2901.0	NM_153774	226432.0	Mm.271642	NM_153774	ENSMUSG00000041879	Ipo9	0710008K06Rik|AI845704|C78347|Imp9|Ranbp9	importin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54295915-4	chr13	54295467	54296467	+	940.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75382.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122440052-2	chr8	122439552	122440552	+	940.75	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028354, exon 3 of 11)	non-coding (NR_028354, exon 3 of 11)	3370.0	NM_138656	192156.0	Mm.28146	NM_138656	ENSMUSG00000006517	Mvd	C78718|Mpd	mevalonate (diphospho) decarboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-153260797-4	chr3	153260310	153261310	+	940.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 3 of 4)	intron (NM_011372, intron 3 of 4)	37839.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105496837-3	chr5	105496340	105497340	+	940.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-22631.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118518860-4	chr7	118518324	118519324	+	940.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304758, intron 5 of 6)	intron (NM_001304758, intron 5 of 6)	14532.0	NM_001304758	12850.0	Mm.20634	NM_009940	ENSMUSG00000030652	Coq7	clk-1	demethyl-Q 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115160125-3	chr8	115159597	115160597	+	940.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019573, intron 8 of 8)	intron (NM_019573, intron 8 of 8)	546797.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63411165-4	chr14	63410657	63411657	+	940.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007549, intron 1 of 12)	intron (NM_007549, intron 1 of 12)	6030.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134699196-3	chr1	134698697	134699697	+	940.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009307, intron 2 of 9)	MIRc|SINE|MIR	-10103.0	NM_001355726	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-48707641-3	chr9	48707139	48708139	+	940.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033324, intron 4 of 6)	intron (NM_001033324, intron 4 of 6)	-102516.0	NM_001311062	18113.0	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	0.0	2.0	0.0	3.0	8.5	0.0
Merged-chr16-20014269-3	chr16	20013769	20014769	+	940.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-31220.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165403477-3	chr2	165402976	165403976	+	940.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER102a|DNA|hAT-Charlie	-3082.0	NM_029021	74614.0	Mm.72179	NM_029021	ENSMUSG00000027670	Ocstamp	4833422F24Rik|OC-STAMP	osteoclast stimulatory transmembrane protein	protein-coding	4.0	7.0	18.5	8.5	18.0	24.0
Merged-chr8-56614473-3	chr8	56613965	56614965	+	940.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63331.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37692552-3	chr13	37692049	37693049	+	940.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-133489.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-78050078-4	chr2	78049587	78050587	+	940.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1090.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-58986900-3	chr4	58986396	58987396	+	940.6555789999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025968, intron 1 of 9)	intron (NM_025968, intron 1 of 9)	182.0	NM_025968	67103.0	Mm.34497	NM_025968	ENSMUSG00000028378	Ptgr1	2510002C21Rik|Ltb4dh|Zadh3	prostaglandin reductase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134743856-4	chr6	134743357	134744357	+	940.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130447, intron 3 of 6)	intron (NM_130447, intron 3 of 6)	-48503.0	NR_151454	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	31.5	44.0	39.0	37.5	44.0	51.5
Merged-chr10-40108130-4	chr10	40107610	40108610	+	940.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	34144.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85034873-4	chr8	85034354	85035354	+	940.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2061.0	NM_145390	212999.0	Mm.220357	NM_145390	ENSMUSG00000031691	Tnpo2	1110034O24Rik|AA414969|AI464345|AI852433|IPO3|Knpb2b|Kpnb2b|TRN2	transportin 2 (importin 3, karyopherin beta 2b)	protein-coding	36.5	40.0	24.0	24.5	46.0	34.5
Merged-chr5-99578908-4	chr5	99578405	99579405	+	940.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	150155.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20005675-4	chr10	20005170	20006170	+	940.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 2 of 29)	intron (NM_008580, intron 2 of 29)	71144.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105283324-4	chr8	105282821	105283821	+	940.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001166394, exon 5 of 7)	exon (NM_001166394, exon 5 of 7)	6207.0	NM_001166394	74356.0	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87761859-18	chr11	87761628	87762628	+	940.6239619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172449, intron 1 of 31)	intron (NM_172449, intron 1 of 31)	1587.0	NM_172449	207777.0	Mm.342019	NM_172449	ENSMUSG00000034156	Tspoap1	Bzrap1|D230016K05|PRAX-1|mKIAA0612	TSPO associated protein 1	protein-coding	9.0	1.0	0.0	10.0	0.0	3.5
Merged-chr18-38354341-6	chr18	38353827	38354827	+	940.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15334.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3812691-4	chr4	3812178	3813178	+	940.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	22977.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	17.5	31.0	32.5	15.5	15.0	19.5
Merged-chr1-156676373-4	chr1	156675872	156676872	+	940.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2033.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	24.5	31.5	29.0	14.0	42.5	20.0
Merged-chr2-45231016-4	chr2	45230517	45231517	+	940.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113575.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56745239-4	chr19	56744760	56745760	+	940.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22888.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-106804429-4	chr4	106803923	106804923	+	940.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347159, intron 1 of 15)	intron (NM_001347159, intron 1 of 15)	584.0	NM_001347159	329910.0	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31565471-3	chr17	31564973	31565973	+	940.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016670, intron 1 of 10)	CpG	700.0	NM_016670	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152604433-3	chr1	152603933	152604933	+	940.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	20784.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-15717568-3	chr9	15717117	15718117	+	940.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172289, intron 1 of 10)	intron (NM_172289, intron 1 of 10)	7879.0	NM_172289	234967.0	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13584694-3	chr9	13584174	13585174	+	940.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35315.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60501365-7	chr18	60500894	60501894	+	940.552368	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134133, exon 1 of 2)	5' UTR (NM_134133, exon 1 of 2)	589.0	NM_134133	106878.0	Mm.273197	NM_134133	ENSMUSG00000038059	Smim3	2010002N04Rik|AI195350|AW561905|Nid67|cI-41	small integral membrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136429830-4	chr5	136429338	136430338	+	940.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291238, intron 2 of 22)	intron (NM_001291238, intron 2 of 22)	-54035.0	NR_030500	723975.0		NR_030500	ENSMUSG00000106479	Mir721	Mirn721|miRY|mir-721|mmu-mir-721	microRNA 721	ncRNA	1.0	0.0	0.5	0.0	0.0	0.5
Merged-chr10-117682716-4	chr10	117682211	117683211	+	940.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027468, intron 8 of 8)	B3|SINE|B2	28047.0	NM_010786	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86610412-4	chr11	86609902	86610902	+	940.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 8 of 11)	RSINE1|SINE|B4	-26244.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8843139-4	chr19	8842650	8843650	+	940.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008144, intron 3 of 10)	intron (NM_008144, intron 3 of 10)	2647.0	NM_001290823	14705.0	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62609242-4	chr11	62608747	62609747	+	940.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198861, exon 3 of 4)	exon (NM_198861, exon 3 of 4)	4717.0	NR_028541	100217444.0		NR_028541		Snord65	MBII-135|snoRNA135	small nucleolar RNA, C/D box 65	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-75720218-3	chr12	75719714	75720714	+	940.5277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030750, intron 2 of 2)	B1_Mur1|SINE|Alu	15515.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79982564-4	chr3	79982056	79983056	+	940.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	96626.0	NM_133187	68659.0	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-143168516-4	chr6	143168016	143169016	+	940.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029250, intron 1 of 7)	intron (NM_029250, intron 1 of 7)	1286.0	NM_029250	75320.0	Mm.272548	NM_029250	ENSMUSG00000030275	Etnk1	1110061E11Rik|4930555L11Rik|AI195356|AI841245|C80956|D6Ertd3e|EKI1	ethanolamine kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-79535518-4	chr14	79535029	79536029	+	940.5125119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	19855.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57144417-2	chr9	57143917	57144917	+	940.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028347, intron 5 of 9)	intron (NM_028347, intron 5 of 9)	3888.0	NM_028347	72774.0	Mm.35749	NM_028347	ENSMUSG00000032298	Neil1	2810450N13Rik|NEH1|Nei1	nei endonuclease VIII-like 1 (E. coli)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-48772453-2	chr11	48771953	48772953	+	940.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27907.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-89098288-4	chr11	89097792	89098792	+	940.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	24451.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	2.0	9.5	10.5	0.0	4.5	3.5
Merged-chr9-3015327-4	chr9	3014842	3015842	+	940.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	23401.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118840794-2	chr9	118840294	118841294	+	940.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 6 of 13)	LTR16C|LTR|ERVL	-85742.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85395244-2	chr12	85394744	85395744	+	940.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20527.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117280346-2	chr10	117279846	117280846	+	940.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_017372, intron 2 of 3)	intron (NM_017372, intron 2 of 3)	1926.0	NM_017372	17105.0	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32494831-4	chr19	32494338	32495338	+	940.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010799, intron 3 of 4)	intron (NM_010799, intron 3 of 4)	9069.0	NM_010799	17330.0	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-66962737-3	chr6	66962242	66963242	+	940.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177560, intron 3 of 4)	intron (NM_001177560, intron 3 of 4)	65851.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25367914-2	chr2	25367414	25368414	+	940.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-2251.0	NM_001033293	227620.0	Mm.33797	NM_001033293	ENSMUSG00000026956	Uap1l1	5730445F03Rik	UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32745970-2	chr12	32745470	32746470	+	940.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-74365.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124550999-2	chr5	124550499	124551499	+	940.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019770)	TTS (NM_019770)	-1865.0	NM_001190795	67848.0	Mm.281601	NM_026409	ENSMUSG00000029389	Ddx55	2810021H22Rik|mKIAA1595	DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34349110-2	chr17	34348610	34349610	+	940.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-4465.0	NM_010381	100504404.0	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	11.0	46.5	22.0	17.0	70.0	32.0
Merged-chr10-59864575-2	chr10	59864075	59865075	+	940.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291443)	TTS (NM_001291443)	-15016.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113590974-3	chr13	113590466	113591466	+	940.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27598.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-110667409-2	chr14	110666909	110667909	+	940.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	87740.0	NM_175499	239250.0	Mm.49728	NM_175499	ENSMUSG00000045871	Slitrk6	4832410J21Rik|Sltk6	SLIT and NTRK-like family, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37918778-2	chr13	37918278	37919278	+	940.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033615, intron 8 of 9)	intron (NR_033615, intron 8 of 9)	29907.0	NM_001177869	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99387788-2	chr7	99387288	99388288	+	940.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_201352, intron 2 of 17)	intron (NM_201352, intron 2 of 17)	6270.0	NM_001362166	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr1-33877953-2	chr1	33877453	33878453	+	940.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 3 of 6)	intron (NM_177235, intron 3 of 6)	29668.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32571208-4	chr4	32570701	32571701	+	940.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_026843, intron 1 of 4)	intron (NR_026843, intron 1 of 4)	461.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	185.0	376.5	358.5	146.0	444.0	287.5
Merged-chr8-119635162-2	chr8	119634662	119635662	+	940.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357210, intron 1 of 3)	intron (NM_001357210, intron 1 of 3)	518.0	NM_001357210	66733.0	Mm.358699	NM_025734	ENSMUSG00000045246	Kcng4	4921535I01Rik|AW049024|KV6.3|KV6.4	potassium voltage-gated channel, subfamily G, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-3993756-2	chr15	3993256	3994256	+	940.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145930, intron 1 of 5)	intron (NM_145930, intron 1 of 5)	1996.0	NM_145930	106064.0	Mm.21299	NM_145930	ENSMUSG00000041935	AW549877	AI195826	expressed sequence AW549877	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-143996936-2	chr1	143996436	143997436	+	940.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7213.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-55258042-2	chr9	55257542	55258542	+	940.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	PB1D10|SINE|Alu	25583.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49042507-2	chr13	49042007	49043007	+	940.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290313, intron 28 of 29)	intron (NM_001290313, intron 28 of 29)	74395.0	NR_015601	68128.0	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108556062-3	chr6	108555565	108556565	+	940.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66322.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	10.0	24.5	12.0	10.0	19.5	11.5
Merged-chr11-115617427-2	chr11	115616927	115617927	+	940.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252394, intron 4 of 5)	intron (NM_001252394, intron 4 of 5)	-4458.0	NM_001243587	69674.0	Mm.390387	NM_027162	ENSMUSG00000020743	Mif4gd	1110014L05Rik|2310075G12Rik	MIF4G domain containing	protein-coding	1.0	1.0	0.0	3.0	1.5	0.5
Merged-chr10-24493875-4	chr10	24493366	24494366	+	940.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101576.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141221240-2	chr7	141220740	141221740	+	940.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029793)	TTS (NR_029793)	253.0	NR_029793	387206.0		NR_029793	ENSMUSG00000065551	Mir210	Mirn210|mir-210|mmu-mir-210	microRNA 210	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88701215-4	chr1	88700726	88701726	+	940.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177305, exon 1 of 1)	exon (NM_177305, exon 1 of 1)	965.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46611420-3	chr4	46610908	46611908	+	940.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198664, intron 9 of 12)	intron (NM_198664, intron 9 of 12)	-9479.0	NM_001164804	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98933366-4	chr11	98932865	98933865	+	940.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4331.0	NM_009024	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116071607-4	chr11	116071116	116072116	+	940.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009573, intron 13 of 32)	intron (NM_001009573, intron 13 of 32)	6345.0	NM_001009573	70450.0	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58452419-4	chr13	58451932	58452932	+	940.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49089.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100125597-3	chr15	100125093	100126093	+	940.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 2 of 37)	intron (NM_001159361, intron 2 of 37)	-28803.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27504668-3	chr2	27504153	27505153	+	940.422241	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10494.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105317023-4	chr4	105316514	105317514	+	940.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	159667.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	31.5	31.5	52.5	18.5	31.5	44.5
Merged-chr5-34636686-4	chr5	34636218	34637218	+	940.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001356979, exon 2 of 13)	exon (NM_001356979, exon 2 of 13)	494.0	NM_001356978	68294.0	Mm.34564	NM_026660	ENSMUSG00000001082	Mfsd10	0610009O03Rik|Tetran	major facilitator superfamily domain containing 10	protein-coding	20.0	28.0	31.0	8.5	22.0	23.0
Merged-chr18-70620292-4	chr18	70619801	70620801	+	940.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010773, intron 5 of 6)	intron (NM_010773, intron 5 of 6)	52009.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-69392375-4	chr13	69391843	69392843	+	940.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	141521.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	11.5	14.0	7.0	2.0	0.0	2.0
Merged-chr8-126527473-3	chr8	126526969	126527969	+	940.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52404.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148379683-3	chr5	148379180	148380180	+	940.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007513, intron 1 of 12)	intron (NM_007513, intron 1 of 12)	13135.0	NM_001301424	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	4.5	9.5	0.0	2.0	0.0	1.5
Merged-chr4-140674484-3	chr4	140673981	140674981	+	940.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8576.0	NM_001112722	72754.0	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	1.0	0.5	10.0	0.0	0.5	0.5
Merged-chr8-78908073-3	chr8	78907569	78908569	+	940.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-86917.0	NM_030145	78651.0	Mm.28694	NM_030145	ENSMUSG00000031683	Lsm6	1500031N17Rik|2410088K19Rik|AI747288	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-119313181-4	chr12	119312673	119313673	+	940.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74897.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-30282709-2	chr12	30282165	30283165	+	940.375	f0_balb.idr|f1_balb.idr	intron (NM_001324521, intron 6 of 15)	intron (NM_001324521, intron 6 of 15)	90710.0	NM_172951	268534.0	Mm.279765	NM_172951	ENSMUSG00000020672	Sntg2	2210008K22Rik|9530013L23|BB121248|G2syn|Syn5	syntrophin, gamma 2	protein-coding	0.0	1.5	0.0	3.0	7.5	8.0
Merged-chr8-10172493-4	chr8	10171970	10172970	+	940.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001319151, intron 1 of 34)	intron (NM_001319151, intron 1 of 34)	18559.0	NM_001319151	244281.0	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-56824338-4	chr10	56823887	56824887	+	940.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	392406.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-40722973-4	chr13	40722496	40723496	+	940.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122948, intron 4 of 6)	CpG	-4812.0	NR_125899	102633805.0		NR_125899	ENSMUSG00000097752	Gm26688	Tfap2a-as1	predicted gene, 26688	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73057027-4	chr14	73056515	73057515	+	940.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-7901.0	NM_001162412	70086.0	Mm.158324	NM_133720	ENSMUSG00000033470	Cysltr2	2300001H05Rik|CYSLT2R|Cltr2|Cyslt2	cysteinyl leukotriene receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-36130384-3	chr8	36129860	36130860	+	940.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172911, intron 4 of 5)	intron (NM_172911, intron 4 of 5)	-25650.0	NR_151736	330738.0	Mm.128075	NR_151736	ENSMUSG00000109704	Gm38414	A230084N10|Gm45568	predicted gene, 38414	ncRNA	21.5	13.5	23.5	11.0	11.0	13.0
Merged-chr8-120041042-3	chr8	120040548	120041548	+	940.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310635, intron 14 of 14)	intron (NM_001310635, intron 14 of 14)	48610.0	NM_001310635	78892.0	Mm.264680	NM_030209	ENSMUSG00000031825	Crispld2	1810049K24Rik|Lcrisp2|Lgl1|coffeecrisp	cysteine-rich secretory protein LCCL domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132824164-4	chr4	132823669	132824669	+	940.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18965.0	NM_001355198	100336.0	Mm.105230	NM_146154	ENSMUSG00000028882	Ppp1r8	6330548N22Rik|AU044684|NIPP1	protein phosphatase 1, regulatory (inhibitor) subunit 8	protein-coding	7.5	22.5	21.0	4.0	10.5	11.0
Merged-chr4-88035203-3	chr4	88034717	88035717	+	940.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1810.0	NM_027326	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-90645091-4	chr15	90644569	90645569	+	940.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033851, intron 3 of 3)	intron (NM_001033851, intron 3 of 3)	34319.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	1.5	4.5	2.5	0.5	4.5	6.5
Merged-chr7-90199843-2	chr7	90199339	90200339	+	940.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 19 of 19)	RMER19B|LTR|ERVK	65593.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	6.5	4.0	12.5	15.5	2.0	8.0
Merged-chr12-36308888-3	chr12	36308414	36309414	+	940.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5255.0	NM_025312	66042.0	Mm.43375	NM_025312	ENSMUSG00000036169	Sostdc1	0610006G05Rik|Sostl|USAG-1|Wise|ectodin	sclerostin domain containing 1	protein-coding	1.5	0.0	5.0	1.5	0.0	5.0
Merged-chr8-111182253-4	chr8	111181754	111182754	+	940.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 9 of 25)	intron (NM_009149, intron 9 of 25)	-36756.0	NR_040364	434350.0	Mm.442061	NR_040363		9430091E24Rik	-	RIKEN cDNA 9430091E24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117897378-4	chr10	117896869	117897869	+	940.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-28090.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	36.0	103.0	67.0	20.0	138.0	60.0
Merged-chr13-110907725-4	chr13	110907270	110908270	+	940.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131193, exon 5 of 5)	non-coding (NR_131193, exon 5 of 5)	-3924.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127248603-3	chr2	127248134	127249134	+	940.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025296)	promoter-TSS (NM_025296)	659.0	NM_175145	69470.0	Mm.200889	NM_175145	ENSMUSG00000034850	Tmem127	2310003P10Rik|AI314202|AI317350	transmembrane protein 127	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-70709500-3	chr6	70709046	70710046	+	940.322205	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82629.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102929700-4	chr14	102929185	102930185	+	940.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	52947.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-57330946-4	chr2	57330453	57331453	+	940.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010274, intron 6 of 16)	intron (NM_010274, intron 6 of 16)	92571.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-111165162-4	chr11	111164703	111165703	+	940.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99039.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	0.0	2.0	0.5	2.0	2.5	0.5
Merged-chr19-36919700-4	chr19	36919173	36920173	+	940.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028263)	promoter-TSS (NM_028263)	-74.0	NM_028263	72514.0	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	2.0	33.0	10.5	3.5	13.5	11.0
Merged-chr3-95672663-4	chr3	95672161	95673161	+	940.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13940.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	4.5	14.5	16.0	7.5	27.0	19.5
Merged-chr9-21464009-4	chr9	21463522	21464522	+	940.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 2 of 19)	ID_B1|SINE|B4	32542.0	NR_029585	387194.0		NR_029585	ENSMUSG00000065547	Mir199a-1	Mirn199|Mirn199a-1|mir-199a-1	microRNA 199a-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-97959837-3	chr5	97959332	97960332	+	940.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133738, intron 12 of 16)	MLT1E2|LTR|ERVL-MaLR	71130.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64349853-3	chr7	64349362	64350362	+	940.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177893, intron 11 of 13)	intron (NM_177893, intron 11 of 13)	24233.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97737333-3	chr3	97736845	97737845	+	940.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 24 of 46)	intron (NM_001039376, intron 24 of 46)	30669.0	NM_178080	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42003782-3	chr10	42003257	42004257	+	940.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 3 of 17)	CT-rich|Low_complexity|Low_complexity	14625.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97661629-6	chr11	97661153	97662153	+	940.255554	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1759.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	47.5	87.0	67.5	36.0	114.0	29.0
Merged-chr11-94348143-4	chr11	94347667	94348667	+	940.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 29 of 30)	intron (NM_029600, intron 29 of 30)	20166.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-103345241-4	chr12	103344761	103345761	+	940.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 2 of 9)	intron (NM_023049, intron 2 of 9)	10740.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-13276028-2	chr2	13275528	13276528	+	940.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081084)	TTS (NM_001081084)	-4613.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-181856103-3	chr1	181855652	181856652	+	940.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13751.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120567362-2	chr8	120566862	120567862	+	940.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 5 of 15)	intron (NM_001145896, intron 5 of 15)	21713.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155721786-3	chr4	155721306	155722306	+	940.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026899, intron 2 of 4)	B2_Mm2|SINE|B2	-12998.0	NM_001101506	381582.0	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84881745-4	chr1	84881252	84882252	+	940.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025386, intron 2 of 3)	RMER15|LTR|ERVL	41911.0	NM_025386	66153.0	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120511033-4	chr8	120510533	120511533	+	940.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	PB1D7|SINE|Alu	22167.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123531041-4	chr4	123530537	123531537	+	940.241699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 5 of 92)	intron (NM_001199137, intron 5 of 92)	-85383.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24661579-8	chr7	24661050	24662050	+	940.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030681, exon 1 of 2)	non-coding (NR_030681, exon 1 of 2)	256.0	NR_030681	100043706.0	Mm.483825	NR_030681	ENSMUSG00000108470	Gm4598	-	predicted gene 4598	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59169998-3	chr11	59169507	59170507	+	940.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6262.0	NM_173785	216792.0	Mm.266175	NM_173785	ENSMUSG00000049287	Iba57	4930543L23Rik|A230051G13Rik|C1orf69	IBA57 homolog, iron-sulfur cluster assembly	protein-coding	0.0	2.0	2.5	0.0	9.5	5.0
Merged-chr3-96596946-4	chr3	96596431	96597431	+	940.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024851, intron 1 of 1)	intron (NM_001024851, intron 1 of 1)	295.0	NM_001024851	545554.0	Mm.267664	NM_001024851	ENSMUSG00000049097	Ankrd34a	AW060394|Ankrd34	ankyrin repeat domain 34A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109418325-4	chr4	109417827	109418827	+	940.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145948, intron 2 of 17)	intron (NM_001145948, intron 2 of 17)	2680.0	NM_001145948	230603.0	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6856921-4	chr19	6856428	6857428	+	940.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081291, exon 6 of 27)	exon (NM_001081291, exon 6 of 27)	1283.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54233453-2	chr14	54232948	54233948	+	940.18335	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20481.0	NM_001113358	13135.0	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	1.5	4.0	6.0	7.0	2.5	7.5
Merged-chr2-32132806-4	chr2	32132304	32133304	+	940.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-18344.0	NM_172661	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99474672-4	chr15	99474202	99475202	+	940.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029236)	promoter-TSS (NM_029236)	28.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	84.0	192.0	135.0	57.5	163.0	103.0
Merged-chr12-33332220-4	chr12	33331698	33332698	+	940.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033436, intron 2 of 7)	intron (NM_001033436, intron 2 of 7)	29683.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	1.0	2.5	2.0	0.5	9.5	0.0
Merged-chr4-133276982-2	chr4	133276482	133277482	+	940.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_025667, intron 1 of 5)	intron (NM_025667, intron 1 of 5)	808.0	NM_025667	52174.0	Mm.244748	NM_025667	ENSMUSG00000028857	Tmem222	5730406H10Rik|AA409341|D4Ertd196e	transmembrane protein 222	protein-coding	15.0	45.0	18.0	20.5	45.0	24.0
Merged-chr6-7967622-3	chr6	7967098	7968098	+	940.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122374.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90214712-2	chr7	90214212	90215212	+	940.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50720.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	0.0	4.0	0.0	4.5	0.0	0.5
Merged-chr1-170936472-3	chr1	170935962	170936962	+	940.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8879.0	NM_001160215	98752.0	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-119052643-3	chr10	119052159	119053159	+	940.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR81A|LTR|Gypsy	-2160.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34858166-4	chr18	34857674	34858674	+	940.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-3033.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80117975-2	chr10	80117475	80118475	+	940.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301853, intron 1 of 8)	intron (NM_001301853, intron 1 of 8)	2172.0	NM_001301854	20869.0	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25832757-4	chr15	25832250	25833250	+	940.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10548.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65745626-4	chr9	65745120	65746120	+	940.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172536, intron 2 of 9)	RSINE1|SINE|B4	69072.0	NM_001301307	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	11.5	2.0	8.5	10.5	15.5	17.5
Merged-chr11-20500745-4	chr11	20500247	20501247	+	940.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16D1|LTR|ERVL	-42506.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155224366-4	chr1	155223871	155224871	+	940.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65668.0	NM_021433	58244.0	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30980018-4	chr2	30979549	30980549	+	940.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144885, exon 3 of 9)	exon (NM_144885, exon 3 of 9)	1892.0	NM_144885	227707.0	Mm.235238	NM_144885	ENSMUSG00000026851	BC005624	-	cDNA sequence BC005624	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-43672605-4	chr10	43672099	43673099	+	940.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73559.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51530535-3	chr10	51530021	51531021	+	940.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MuRRS4-int|LTR|ERV1	39623.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83773326-3	chr8	83772819	83773819	+	940.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-32008.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	12.5	7.0	21.0	20.5	20.5	18.5
Merged-chr1-13206995-3	chr1	13206465	13207465	+	940.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 4 of 22)	intron (NM_008678, intron 4 of 22)	-79802.0	NM_001081209	383491.0	Mm.309380	NM_001081209	ENSMUSG00000042414	Prdm14	-	PR domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139298685-3	chr7	139298177	139299177	+	940.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50195.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-53986398-3	chr6	53985825	53986825	+	940.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110484, intron 1 of 3)	intron (NR_110484, intron 1 of 3)	7634.0	NR_110484	320178.0	Mm.320413	NR_110484	ENSMUSG00000108060	4921529L05Rik	4930590G02Rik	RIKEN cDNA 4921529L05 gene	ncRNA	23.0	41.5	32.5	4.0	4.5	0.0
Merged-chr3-149436585-4	chr3	149436088	149437088	+	940.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161851.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.5	0.0	1.0	0.5	0.0	1.0
Merged-chr1-180390567-4	chr1	180390065	180391065	+	940.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-60016.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106394581-4	chr8	106394090	106395090	+	940.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20749.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25110087-3	chr8	25109540	25110540	+	940.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_155282)	TTS (NR_155282)	7861.0	NR_155282	74744.0	Mm.117802	NR_155282		5830408C22Rik	2700026D01Rik	RIKEN cDNA 5830408C22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-35953115-3	chr13	35952618	35953618	+	940.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-14788.0	NM_029628	76487.0	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	4.5	4.5	6.5	3.5	7.0	8.0
Merged-chr10-80340374-4	chr10	80339871	80340871	+	940.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_104339, exon 12 of 12)	non-coding (NR_104339, exon 12 of 12)	8077.0	NM_001285435	66548.0	Mm.71891	NM_025629	ENSMUSG00000043822	Adamtsl5	2010109H09Rik|Thsd6	ADAMTS-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-56944588-4	chr10	56944076	56945076	+	940.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	512595.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166665689-3	chr2	166665195	166666195	+	940.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	RMER15|LTR|ERVL	48137.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98803407-4	chr7	98802949	98803949	+	940.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-31663.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr10-99199712-4	chr10	99199185	99200185	+	940.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63546.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39378175-4	chr10	39377667	39378667	+	940.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122893, intron 1 of 13)	intron (NM_001122893, intron 1 of 13)	8368.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118728528-4	chr2	118728026	118729026	+	940.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290790)	promoter-TSS (NM_001290790)	-88.0	NM_001290790	18796.0	Mm.215156	NM_177568	ENSMUSG00000040061	Plcb2	AI550384|B230205M18Rik|B230399N12	phospholipase C, beta 2	protein-coding	32.5	50.0	55.5	9.5	40.5	63.0
Merged-chr1-59755486-4	chr1	59754987	59755987	+	940.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-8792.0	NM_007561	12168.0	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	19.0	50.5	41.5	19.0	49.0	37.5
Merged-chr5-73279952-2	chr5	73279452	73280452	+	940.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040689, intron 1 of 2)	intron (NR_040689, intron 1 of 2)	4232.0	NR_040689	72276.0	Mm.271215	NR_040687	ENSMUSG00000100175	1700025M24Rik	-	RIKEN cDNA 1700025M24 gene	ncRNA	6.5	0.0	0.0	5.5	0.0	0.0
Merged-chr8-4800811-1	chr8	4800311	4801311	+	940.0	f1_balb.idr	Intergenic	Intergenic	-21244.0	NM_011369	20419.0	Mm.37801	NM_011369	ENSMUSG00000022322	Shcbp1	mPAL	Shc SH2-domain binding protein 1	protein-coding	1.5	1.5	4.0	2.5	1.0	0.0
Merged-chr17-45553982-2	chr17	45553482	45554482	+	940.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1718.0	NM_008690	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-44011924-2	chr4	44011424	44012424	+	940.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290470)	promoter-TSS (NM_001290470)	-719.0	NM_016760	12757.0	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81014071-1	chr13	81013571	81014571	+	940.0	f0_balb.idr	intron (NR_015587, intron 1 of 1)	intron (NR_015587, intron 1 of 1)	49997.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-78234256-2	chr16	78233756	78234756	+	940.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	21198.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61112503-2	chr14	61112003	61113003	+	940.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25954.0	NM_172809	50720.0	Mm.440703	NM_015788	ENSMUSG00000048279	Sacs	A230052M14|DNAJC29|E130115J16Rik	sacsin	protein-coding	0.5	0.0	0.0	0.5	0.0	0.0
Merged-chr8-128456604-3	chr8	128456043	128457043	+	940.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358959, intron 6 of 16)	intron (NM_001358959, intron 6 of 16)	97302.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-105674007-4	chr2	105673530	105674530	+	940.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001244198, intron 1 of 12)	intron (NM_001244198, intron 1 of 12)	-1714.0	NM_001244200	18508.0	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	0.0	0.0	0.5	0.0	0.5	0.0
Merged-chr11-35302433-2	chr11	35301933	35302933	+	940.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011412, intron 4 of 35)	MIRc|SINE|MIR	180977.0	NM_011412	20564.0	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit guidance ligand 3	protein-coding	1.5	2.0	3.0	0.0	1.0	0.0
Merged-chr18-64598139-3	chr18	64597641	64598641	+	940.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001488, intron 2 of 27)	intron (NM_001001488, intron 2 of 27)	62859.0	NM_001001488	54670.0	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42592511-2	chr10	42592011	42593011	+	940.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8923.0	NM_152229	21907.0	Mm.287100	NM_152229	ENSMUSG00000019803	Nr2e1	Mtl1|Mtll|TLL|Tlx|XTLL|fierce|frc|tailless	nuclear receptor subfamily 2, group E, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117477800-2	chr8	117477300	117478300	+	940.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18535.0	NR_106046	102465653.0		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-117091006-1	chr7	117090506	117091506	+	940.0	f1_c57bl6.idr	Intergenic	Intergenic	-289973.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166978572-2	chr2	166978072	166979072	+	940.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109905, intron 1 of 11)	B1_Mus2|SINE|Alu	-13855.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-117534511-2	chr12	117534011	117535011	+	940.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 3 of 27)	intron (NM_175930, intron 3 of 27)	18032.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	8.0	0.0	9.5	4.5	0.0	8.5
Merged-chr3-79179751-3	chr3	79179289	79180289	+	940.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CACAA)n|Simple_repeat|Simple_repeat	-33130.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	8.0	29.0	21.5	15.0	14.5	3.0
Merged-chr12-28732397-3	chr12	28731889	28732889	+	940.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161410, intron 3 of 11)	intron (NM_001161410, intron 3 of 11)	18005.0	NM_001161410	217449.0	Mm.132006	NM_178811	ENSMUSG00000020628	Trappc12	CGI-87|D930014A20Rik|Ttc15	trafficking protein particle complex 12	protein-coding	22.5	45.0	50.5	40.5	68.0	38.5
Merged-chr10-119000293-2	chr10	118999793	119000793	+	940.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50206.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-130691954-2	chr3	130691454	130692454	+	940.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17490.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104675500-3	chr3	104674983	104675983	+	940.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36819.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25319232-1	chr10	25318732	25319732	+	940.0	f0_balb.idr	Intergenic	Intergenic	-20069.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	18.0	99.0	50.0	46.0	89.5	52.5
Merged-chr7-96524025-1	chr7	96523525	96524525	+	940.0	f0_balb.idr	intron (NM_001310762, intron 4 of 32)	intron (NM_001310762, intron 4 of 32)	-182061.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43421955-2	chr4	43421455	43422455	+	940.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_199057, exon 3 of 12)	exon (NM_199057, exon 3 of 12)	7179.0	NM_177377	329831.0	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-15855749-1	chr3	15855249	15856249	+	940.0	f1_c57bl6.idr	Intergenic	Intergenic	-7262.0	NM_001173459	100038947.0	Mm.330924	NM_001173459	ENSMUSG00000074677	LOC100038947	-	signal-regulatory protein beta 1-like	protein-coding	0.0	4.0	3.0	2.5	0.0	1.5
Merged-chr2-27425053-2	chr2	27424553	27425553	+	940.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	2555.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122561547-1	chr10	122561047	122562047	+	940.0	f1_balb.idr	Intergenic	IMPB_01|Satellite|Satellite	8344.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	8.5	29.0	31.5	7.5	25.5	12.0
Merged-chr7-19692711-4	chr7	19692227	19693227	+	939.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007469)	promoter-TSS (NM_007469)	-68.0	NM_007469	11812.0	Mm.182440	NM_007469	ENSMUSG00000040564	Apoc1	Apo-CIB|ApoC-IB|apo-CI|apoC-I	apolipoprotein C-I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80041826-4	chr18	80041317	80042317	+	939.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5078.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	1.0	2.5	0.0	0.0	0.0	1.0
Merged-chr8-123034321-4	chr8	123033814	123034814	+	939.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	7970.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	13.0	10.5	13.0	1.0	5.0	2.5
Merged-chr2-35755961-3	chr2	35755459	35756459	+	939.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029774, intron 9 of 9)	intron (NM_029774, intron 9 of 9)	59227.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111309399-3	chr12	111308865	111309865	+	939.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183016, intron 21 of 36)	intron (NM_183016, intron 21 of 36)	38269.0	NM_033603	93835.0	Mm.197639	NM_033603	ENSMUSG00000021278	Amn	-	amnionless	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-72229168-3	chr1	72228670	72229670	+	939.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14823.0	NR_155355	320933.0	Mm.440953	NR_155355		D230017M19Rik	B930094L07Rik	RIKEN cDNA D230017M19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100458336-4	chr7	100457848	100458848	+	939.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 31 of 32)	intron (NM_001017985, intron 31 of 32)	-14643.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	3.5	6.5	10.0	25.5	26.0	29.0
Merged-chr19-10905488-4	chr19	10904987	10905987	+	939.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001253844, exon 14 of 14)	3' UTR (NM_001253844, exon 14 of 14)	6842.0	NM_001253844	28000.0	Mm.491104	NM_134129	ENSMUSG00000024735	Prpf19	AA617263|AL024362|D19Wsu55e|NMP200|PSO4|Prp19|Snev	pre-mRNA processing factor 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118240645-2	chr11	118240145	118241145	+	939.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	7947.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-176223453-4	chr1	176222957	176223957	+	939.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357846, intron 1 of 8)	intron (NM_001357846, intron 1 of 8)	-9515.0	NM_001195816	319455.0	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding	7.0	33.0	15.5	15.5	31.0	10.0
Merged-chr14-27351198-3	chr14	27350703	27351703	+	939.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	-10186.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	69.0	207.5	109.0	69.0	176.0	126.0
Merged-chr15-6389648-3	chr15	6389177	6390177	+	939.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	2929.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-35220295-3	chr4	35219839	35220839	+	939.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081343, intron 1 of 10)	intron (NM_001081343, intron 1 of 10)	5541.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-57780780-3	chr8	57780284	57781284	+	939.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175032, intron 11 of 11)	intron (NM_175032, intron 11 of 11)	-127729.0	NM_144731	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	2.0	3.0	4.0	0.5	4.5	2.0
Merged-chr7-64049885-4	chr7	64049368	64050368	+	939.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103967.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-51532815-4	chr6	51532330	51533330	+	939.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361581, intron 1 of 6)	intron (NM_001361581, intron 1 of 6)	8570.0	NM_001361580	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	8.5	29.5	20.5	14.0	25.0	23.5
Merged-chr9-37257753-4	chr9	37257252	37258252	+	939.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2014.0	NM_001145960	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27217230-4	chr3	27216757	27217757	+	939.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	34253.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-126682452-4	chr2	126681942	126682942	+	939.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-6105.0	NM_001271470	14391.0	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-50030907-5	chr18	50030253	50031253	+	939.8666380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360935)	promoter-TSS (NM_001360935)	-231.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	7.0	10.5	3.5	5.5	22.0	22.0
Merged-chr11-69432270-4	chr11	69431774	69432774	+	939.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 73 of 85)	intron (NM_001081330, intron 73 of 85)	-18599.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75415440-2	chr18	75414940	75415940	+	939.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48075.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-100031707-4	chr10	100031198	100032198	+	939.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347156, intron 1 of 8)	intron (NM_001347156, intron 1 of 8)	15877.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80055725-2	chr10	80055225	80056225	+	939.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037741, intron 4 of 6)	B3|SINE|B2	1706.0	NM_001037741	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-108638921-2	chr4	108638421	108639421	+	939.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_183300, exon 16 of 16)	3' UTR (NM_183300, exon 16 of 16)	18965.0	NM_177045	319965.0	Mm.151129	NM_177045	ENSMUSG00000028582	Cc2d1b	A830039B04Rik|Freud2	coiled-coil and C2 domain containing 1B	protein-coding	0.0	2.0	2.0	0.0	2.0	2.0
Merged-chr3-132169222-4	chr3	132168684	132169684	+	939.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020265, intron 1 of 3)	intron (NM_020265, intron 1 of 3)	83892.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136218156-4	chr5	136217655	136218655	+	939.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001302938)	TTS (NM_001302938)	-19201.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80640723-3	chr7	80640206	80641206	+	939.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040343, intron 4 of 4)	intron (NR_040343, intron 4 of 4)	4689.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	3.5	20.5	8.0	9.0	25.5	11.5
Merged-chr14-50924025-2	chr14	50923521	50924521	+	939.8333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009687)	promoter-TSS (NM_009687)	872.0	NM_133676	66246.0	Mm.274791	NM_133676	ENSMUSG00000006289	Osgep	1500019L24Rik|GCPL-1|PRSMG1	O-sialoglycoprotein endopeptidase	protein-coding	31.5	63.0	34.0	45.5	85.5	32.5
Merged-chr10-99616000-4	chr10	99615502	99616502	+	939.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038019, intron 1 of 2)	intron (NR_038019, intron 1 of 2)	6831.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26141128-3	chr2	26140634	26141634	+	939.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256521)	promoter-TSS (NM_001256521)	-628.0	NM_001256521	109299.0	Mm.389259	NM_001256521		Tmem250-ps	AI551216|C330006A16Rik	transmembrane protein 250, pseudogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99190070-3	chr7	99189581	99190581	+	939.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7368.0	NM_026384	67800.0	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	2.0	4.5	0.0	0.0	10.5	0.5
Merged-chr14-25832473-4	chr14	25831981	25832981	+	939.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9674.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30772092-4	chr2	30771630	30772630	+	939.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29607.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-121098122-4	chr4	121097627	121098627	+	939.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172700, exon 1 of 10)	5' UTR (NM_172700, exon 1 of 10)	116.0	NM_172700	230709.0	Mm.34399	NM_172700	ENSMUSG00000043207	Zmpste24	A530043O15Rik|D030046F19|FACE1|Face-1|MADB|STE24|Ste24p	zinc metallopeptidase, STE24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53453889-3	chr19	53453408	53454408	+	939.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028427, intron 2 of 9)	intron (NR_028427, intron 2 of 9)	10888.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	0.0	11.5	3.5	9.0	8.5	18.0
Merged-chr2-21215469-4	chr2	21214956	21215956	+	939.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177588)	TTS (NM_177588)	9732.0	NM_177588	208967.0	Mm.268841	NM_177588	ENSMUSG00000048550	Thnsl1	AW413632	threonine synthase-like 1 (bacterial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98322646-4	chr7	98322128	98323128	+	939.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1420.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-77373011-4	chr5	77372511	77373511	+	939.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008048, intron 1 of 4)	intron (NM_008048, intron 1 of 4)	35034.0	NM_001159518	29817.0	Mm.233470	NM_008048	ENSMUSG00000036256	Igfbp7	AGM|Fstl2|Mac25	insulin-like growth factor binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121850135-4	chr8	121849657	121850657	+	939.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20588.0	NM_145605	234825.0	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	0.0	3.0	4.5	0.0	0.5	4.0
Merged-chr5-30849944-4	chr5	30849449	30850449	+	939.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133350, intron 1 of 6)	intron (NM_133350, intron 1 of 6)	-11858.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-22152925-4	chr3	22152452	22153452	+	939.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 2 of 15)	intron (NM_030732, intron 2 of 15)	76300.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-90963506-4	chr15	90962982	90963982	+	939.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016705, intron 22 of 32)	GA-rich|Low_complexity|Low_complexity	-65006.0	NR_033583	20738.0	Mm.431547	NR_033583	ENSMUSG00000116210	Spn-ps	Cd43-ps	sialophorin, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-12287481-6	chr12	12286942	12287942	+	939.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	25303.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5369328-3	chr11	5368835	5369835	+	939.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080924, intron 1 of 8)	intron (NM_001080924, intron 1 of 8)	12405.0	NM_001290501	407821.0	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	1.0	0.0	0.5	0.0	0.0	0.0
Merged-chr8-125587229-3	chr8	125586724	125587724	+	939.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015535, intron 2 of 2)	MTE2b|LTR|ERVL-MaLR	2586.0	NR_015535	75930.0	Mm.195663	NR_015535	ENSMUSG00000110629	4930567H12Rik	4930579P07Rik	RIKEN cDNA 4930567H12 gene	ncRNA	1.5	7.5	5.0	1.0	6.5	3.5
Merged-chr4-65496693-3	chr4	65496197	65497197	+	939.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207109, intron 19 of 22)	intron (NM_207109, intron 19 of 22)	-108289.0	NM_053084	69807.0	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115989128-3	chr6	115988578	115989578	+	939.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026376, intron 1 of 35)	intron (NM_026376, intron 1 of 35)	5927.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53397482-4	chr4	53396984	53397984	+	939.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-42929.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11299529-4	chr2	11298989	11299989	+	939.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 17 of 17)	intron (NM_008859, intron 17 of 17)	-40000.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74711017-4	chr17	74710531	74711531	+	939.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6719.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	41.5	66.0	35.5	9.0	8.0	1.0
Merged-chr9-78479750-2	chr9	78479250	78480250	+	939.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_010106, exon 5 of 8)	exon (NM_010106, exon 5 of 8)	1974.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65990755-4	chr3	65990258	65991258	+	939.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	-32509.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	20.5	13.0	28.5	4.5	12.0	9.5
Merged-chr19-4215360-5	chr19	4214820	4215820	+	939.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310039, intron 1 of 2)	CpG	931.0	NM_001310039	56708.0	Mm.347919	NM_019952	ENSMUSG00000040663	Clcf1	BSF-3|Bsf3|CLC|NNT-1	cardiotrophin-like cytokine factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78303657-3	chr15	78303157	78304157	+	939.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287389, intron 1 of 11)	intron (NM_001287389, intron 1 of 11)	2064.0	NM_007781	12984.0	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	5.0	22.0	10.0	18.0	41.5	11.5
Merged-chr10-93799740-4	chr10	93799218	93800218	+	939.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31837.0	NM_001206851	327799.0	Mm.491598	NM_183199	ENSMUSG00000020020	Usp44	E430004F17Rik	ubiquitin specific peptidase 44	protein-coding	1.5	7.5	4.5	9.0	5.5	0.5
Merged-chr8-70701534-4	chr8	70701082	70702082	+	939.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010592)	TTS (NM_010592)	3843.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	4.5	17.5	8.0	12.0	15.5	10.5
Merged-chr4-103123233-4	chr4	103122741	103123741	+	939.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039081, intron 1 of 12)	intron (NM_001039081, intron 1 of 12)	3851.0	NM_001039081	71148.0	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-132087255-4	chr3	132086781	132087781	+	939.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020265, intron 1 of 3)	intron (NM_020265, intron 1 of 3)	1989.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98541171-4	chr15	98540641	98541641	+	939.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6872.0	NR_153345	69612.0	Mm.229107	NM_133714	ENSMUSG00000022992	Kansl2	2310037I24Rik|B930009D17	KAT8 regulatory NSL complex subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125618190-4	chr7	125617683	125618683	+	939.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021887, intron 1 of 8)	intron (NM_021887, intron 1 of 8)	14754.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	72.0	145.5	142.5	50.5	196.0	120.5
Merged-chr19-5848233-4	chr19	5847751	5848751	+	939.7374880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2771.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	23.5	44.5	41.5	25.0	44.0	43.0
Merged-chr16-90385861-3	chr16	90385361	90386361	+	939.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015755)	promoter-TSS (NM_015755)	-536.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88649523-4	chr3	88648995	88649995	+	939.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3647.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	5.0	31.5	21.0	2.0	36.5	18.0
Merged-chr19-6067166-4	chr19	6066662	6067662	+	939.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081041)	TTS (NM_001081041)	688.0	NM_028454	73166.0	Mm.489613	NM_028454	ENSMUSG00000024799	Tm7sf2	3110041O18Rik|ANG1|C14SR|Dhcr14	transmembrane 7 superfamily member 2	protein-coding	3.0	2.0	1.5	0.0	3.0	0.0
Merged-chr17-5890566-3	chr17	5890065	5891065	+	939.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025664, intron 3 of 17)	intron (NM_025664, intron 3 of 17)	49185.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-43037477-3	chr10	43036974	43037974	+	939.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175407, intron 5 of 6)	intron (NM_175407, intron 5 of 6)	-46312.0	NR_153349	327749.0	Mm.428887	NR_153349		Gm5079	C230040G06	predicted gene 5079	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91498430-4	chr2	91497951	91498951	+	939.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 31 of 37)	intron (NM_172668, intron 31 of 37)	-28311.0	NM_001165989	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	91.5	183.5	135.5	28.0	92.0	32.0
Merged-chr14-79397969-4	chr14	79397465	79398465	+	939.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145960, exon 1 of 11)	5' UTR (NM_145960, exon 1 of 11)	193.0	NM_145960	211253.0	Mm.35306	NM_145960	ENSMUSG00000022022	Mtrf1	A830062K05Rik|MtRF-1	mitochondrial translational release factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-118106904-4	chr4	118106376	118107376	+	939.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285520, intron 2 of 11)	intron (NM_001285520, intron 2 of 11)	28070.0	NM_001285520	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	17.5	32.5	39.0	55.0	99.0	94.5
Merged-chr12-52318657-3	chr12	52318140	52319140	+	939.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	161969.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	20.5	27.0	29.0	39.5	76.5	48.0
Merged-chr18-63864458-3	chr18	63863954	63864954	+	939.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014981, intron 20 of 27)	intron (NM_001014981, intron 20 of 27)	155759.0	NM_001014981	104082.0	Mm.30850	NM_001014981	ENSMUSG00000040560	Wdr7	AI462727|TRAG|mKIAA0541	WD repeat domain 7	protein-coding	0.0	0.0	0.0	0.0	1.0	5.5
Merged-chr18-32285334-4	chr18	32284827	32285827	+	939.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44996.0	NM_133658	13872.0	Mm.282335	NM_133658	ENSMUSG00000024382	Ercc3	BTF2 p89|Ercc-3|XPB	excision repair cross-complementing rodent repair deficiency, complementation group 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108995431-4	chr9	108994931	108995931	+	939.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 1 of 13)	intron (NR_153430, intron 1 of 13)	3529.0	NR_153430	270198.0	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24826574-4	chr16	24826056	24827056	+	939.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 8 of 12)	intron (NM_178665, intron 8 of 12)	104701.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-80636445-3	chr1	80635943	80636943	+	939.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 2 of 55)	intron (NM_175291, intron 2 of 55)	28909.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11740364-3	chr19	11739856	11740856	+	939.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7203.0	NM_008118	14603.0	Mm.456	NM_008118	ENSMUSG00000024682	Gif	AV073125	gastric intrinsic factor	protein-coding	14.0	18.5	23.0	7.0	13.5	10.0
Merged-chr2-104685597-4	chr2	104685113	104686113	+	939.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177190, intron 7 of 9)	intron (NM_177190, intron 7 of 9)	26549.0	NM_177190	320554.0	Mm.249065	NM_177190	ENSMUSG00000027175	Tcp11l1	C130096D04Rik	t-complex 11 like 1	protein-coding	3.0	7.5	3.0	3.5	4.0	2.0
Merged-chr3-88522260-4	chr3	88521758	88522758	+	939.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10137.0	NM_001029890	72640.0	Mm.275154	NM_001029890	ENSMUSG00000074480	Mex3a	2700083E18Rik|Gm411|Rkhd4	mex3 RNA binding family member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-24152118-3	chr18	24151617	24152617	+	939.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30298.0	NM_172625	225280.0	Mm.258973	NM_172625	ENSMUSG00000047989	Ino80c	D030070L09Rik	INO80 complex subunit C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87703843-2	chr16	87703343	87704343	+	939.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	4889.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.0	8.5	3.0	0.0	1.5	5.0
Merged-chr4-155832109-2	chr4	155831587	155832587	+	939.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_025338, intron 2 of 3)	CpG-10779	818.0	NM_025338	66077.0	Mm.28999	NM_025338	ENSMUSG00000065990	Aurkaip1	0610033H09Rik|Aip|Akip|MRP-S38	aurora kinase A interacting protein 1	protein-coding	42.5	105.0	124.0	46.0	101.0	92.0
Merged-chr6-32511634-2	chr6	32511134	32512134	+	939.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_040277, intron 1 of 1)	intron (NR_040277, intron 1 of 1)	493.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12781413-4	chr17	12780897	12781897	+	939.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027784, intron 2 of 2)	intron (NR_027784, intron 2 of 2)	-11691.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10377285-2	chr17	10376785	10377785	+	939.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11B|LTR|ERVK	52683.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69792005-2	chr8	69791505	69792505	+	939.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133224, intron 1 of 25)	PB1D9|SINE|Alu	842.0	NM_133224	170759.0	Mm.186066	NM_133224	ENSMUSG00000031862	Atp13a1	Atp13a|Cgi152|catp	ATPase type 13A1	protein-coding	7.0	31.0	30.0	8.5	56.5	29.5
Merged-chr18-75171443-4	chr18	75170942	75171942	+	939.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027727, intron 13 of 16)	intron (NM_027727, intron 13 of 16)	125875.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-40694471-4	chr11	40693958	40694958	+	939.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199274, intron 1 of 6)	intron (NM_001199274, intron 1 of 6)	745.0	NM_001199274	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-48552573-7	chr13	48552138	48553138	+	939.607117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14366.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51064890-5	chr14	51064312	51065312	+	939.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6630.0	NM_207558	404319.0	Mm.377276	NM_207558	ENSMUSG00000035932	Olfr750	GA_x5J8B7W5WBF-6267395-6266441|GA_x6K02T2PMLR-6808276-6807281|MOR103-18	olfactory receptor 750	protein-coding	47.0	124.5	77.5	22.0	65.5	50.5
Merged-chr11-45546176-5	chr11	45545699	45546699	+	939.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-261884.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	1.5	15.5	10.0	10.5	37.5	16.5
Merged-chr7-116491992-2	chr7	116491492	116492492	+	939.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12377.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-121224084-4	chr6	121223588	121224588	+	939.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017379, intron 4 of 4)	intron (NM_017379, intron 4 of 4)	13354.0	NM_017379	53857.0	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111912515-4	chr12	111912012	111913012	+	939.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4457.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32210624-4	chr19	32210133	32211133	+	939.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	380.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135440277-4	chr4	135439777	135440777	+	939.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-6472.0	NM_022980	53902.0	Mm.331970	NM_022980	ENSMUSG00000059713	Rcan3	AU041093|Csp3|Dscr1l2	regulator of calcineurin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-78894321-4	chr12	78893826	78894826	+	939.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013738, intron 5 of 8)	intron (NM_013738, intron 5 of 8)	12612.0	NM_013738	27260.0	Mm.103380	NM_013738	ENSMUSG00000021118	Plek2	-	pleckstrin 2	protein-coding	4.5	2.5	1.5	8.5	12.5	8.5
Merged-chr7-122415605-4	chr7	122415097	122416097	+	939.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	126472.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10985536-3	chr17	10985040	10986040	+	939.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317726, intron 1 of 6)	intron (NM_001317726, intron 1 of 6)	145181.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95149526-3	chr8	95149010	95150010	+	939.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6970.0	NM_001145831	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-128729725-4	chr1	128729198	128730198	+	939.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-137399.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	14.0	2.0	2.5	3.5	15.0	6.5
Merged-chr6-116228971-4	chr6	116228479	116229479	+	939.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026585, intron 15 of 30)	intron (NM_026585, intron 15 of 30)	20946.0	NM_026585	28006.0	Mm.28524	NM_026585	ENSMUSG00000024104	Washc2	A130095H06|C530005J20Rik|D6Wsu116e|Fam21	WASH complex subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17734254-4	chr6	17733749	17734749	+	939.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289624, intron 1 of 15)	RMER1C|Other|Other	-9343.0	NM_001289627	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81578088-4	chr7	81577577	81578577	+	939.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004185, intron 2 of 9)	intron (NM_001004185, intron 2 of 9)	6785.0	NM_001004185	434204.0	Mm.181641	NM_001004185	ENSMUSG00000045795	Whamm	BB081391|Whdc1|mKIAA1971	WAS protein homolog associated with actin, golgi membranes and microtubules	protein-coding	0.5	0.0	1.0	0.0	1.0	0.0
Merged-chr16-17125161-4	chr16	17124607	17125607	+	939.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358255)	promoter-TSS (NM_001358255)	95.0	NM_183287	70458.0	Mm.234165	NM_183287	ENSMUSG00000049916	2610318N02Rik	AL033325	RIKEN cDNA 2610318N02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102832519-4	chr14	102832016	102833016	+	939.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	150116.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131566330-4	chr1	131565824	131566824	+	939.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR46B|LTR|ERVK	-32790.0	NM_011924	26361.0	Mm.89986	NM_011924	ENSMUSG00000026432	Avpr1b	AVPR3|V3/V1b|VIBR|VPR3	arginine vasopressin receptor 1B	protein-coding	6.0	4.5	4.5	8.5	15.0	4.5
Merged-chr15-101298170-4	chr15	101297665	101298665	+	939.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_033803)	TTS (NR_033803)	4953.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36035485-2	chr17	36034947	36035947	+	939.541626	f1_balb.idr|f1_c57bl6.idr	intron (NR_015618, intron 1 of 1)	intron (NR_015618, intron 1 of 1)	-2746.0	NM_010398	15040.0	Mm.439648	NM_010398	ENSMUSG00000067212	H2-T23	37b|37c|H-2T23|H2-Qa1|Qa-1|Qa-1(b)|Qa1|Qed-1|T18c|T18c(37)|T23b|T23d	histocompatibility 2, T region locus 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98710563-2	chr15	98710063	98711063	+	939.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153518, intron 2 of 7)	B2_Mm2|SINE|B2	2336.0	NM_153518	105833.0	Mm.26205	NM_153518	ENSMUSG00000003354	Ccdc65	4933417K04Rik|AI428139|AU020178|NYD-SP28	coiled-coil domain containing 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-118391137-2	chr1	118390637	118391637	+	939.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359330, intron 1 of 39)	MTD|LTR|ERVL-MaLR	2079.0	NM_001359334	76707.0	Mm.138740	NM_029709	ENSMUSG00000064302	Clasp1	1700030C23Rik|5730583A19Rik|B130045P17Rik|CLASP1alpha	CLIP associating protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106419843-2	chr9	106419343	106420343	+	939.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9568.0	NM_001324533	19944.0	Mm.288696	NM_009082	ENSMUSG00000048758	Rpl29	Rpl43	ribosomal protein L29	protein-coding	2.5	1.0	1.0	0.0	3.5	2.0
Merged-chr7-120831311-4	chr7	120830809	120831809	+	939.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-11522.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50274216-2	chr17	50273716	50274716	+	939.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19404.0	NM_010021	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr5-20950438-2	chr5	20949938	20950938	+	939.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030699)	promoter-TSS (NR_030699)	-551.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70567080-2	chr8	70566580	70567580	+	939.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	MTC|LTR|ERVL-MaLR	-27401.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143821767-2	chr7	143821267	143822267	+	939.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030221, intron 1 of 20)	URR1A|DNA|hAT-Charlie	1085.0	NM_001308095	78914.0	Mm.35104	NM_030221	ENSMUSG00000031090	Nadsyn1	9130012B15Rik	NAD synthetase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-13676691-2	chr17	13676191	13677191	+	939.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83850.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-60588865-1	chr19	60588365	60589365	+	939.5	f0_c57.idr	Intergenic	RLTR45|LTR|ERVK	-7842.0	NM_001172096	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	6.0	8.5	6.0	3.5	6.5	1.0
Merged-chr7-44974545-2	chr7	44974058	44975058	+	939.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252470, intron 1 of 18)	intron (NM_001252470, intron 1 of 18)	293.0	NM_001357670	78070.0	Mm.231465	NM_153679	ENSMUSG00000007783	Cpt1c	6530437J22Rik|9630004I06Rik|CPT I-C|CPT IC|CPT1-B|CPTI-B	carnitine palmitoyltransferase 1c	protein-coding	0.0	8.5	0.0	0.0	0.0	1.0
Merged-chr2-13782290-2	chr2	13781790	13782790	+	939.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145838, intron 2 of 7)	intron (NM_145838, intron 2 of 7)	11230.0	NM_145838	241230.0	Mm.330004	NM_145838	ENSMUSG00000003418	St8sia6	1700007J08Rik|AI314453|AI875066|ST8SiaVI|Siat8f	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55756785-2	chr19	55756285	55757285	+	939.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	14975.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	8.0	5.0	0.0	3.0	0.5
Merged-chr2-166489499-2	chr2	166488999	166489999	+	939.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42048.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-48555743-2	chr6	48555292	48556292	+	939.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177736, intron 1 of 2)	RMER2|LTR|ERV1	993.0	NM_177736	243371.0	Mm.290764	NM_177736	ENSMUSG00000073096	Lrrc61	BC027309	leucine rich repeat containing 61	protein-coding	11.5	18.5	11.0	11.5	14.0	4.5
Merged-chr2-35308291-3	chr2	35307795	35308795	+	939.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_146120)	TTS (NM_146120)	25915.0	NM_146120	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-137648865-2	chr6	137648365	137649365	+	939.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007945, intron 1 of 21)	CpG	420.0	NM_001271588	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70002081-2	chr11	70001581	70002581	+	939.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007888, intron 1 of 14)	B3|SINE|B2	1455.0	NM_007888	13543.0	Mm.5114	NM_007888	ENSMUSG00000020888	Dvl2	-	dishevelled segment polarity protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170349140-2	chr2	170348640	170349640	+	939.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029815, intron 12 of 12)	intron (NM_029815, intron 12 of 12)	-7221.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-46736509-2	chr13	46736009	46737009	+	939.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8660.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	46.0	127.5	124.0	72.5	120.0	123.5
Merged-chr17-28488026-2	chr17	28487526	28488526	+	939.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1877.0	NM_010220	14229.0	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87500312-4	chr3	87499815	87500815	+	939.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001113238, exon 12 of 12)	3' UTR (NM_001113238, exon 12 of 12)	-25263.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	9.5	24.0	18.5	43.0	98.5	83.0
Merged-chr8-83736820-4	chr8	83736310	83737310	+	939.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 1 of 19)	intron (NM_011925, intron 1 of 19)	4501.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	21.0	17.0	18.5	2.5	8.5	6.5
Merged-chr11-80148399-4	chr11	80147925	80148925	+	939.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5737.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152763554-6	chr3	152763015	152764015	+	939.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025662, intron 9 of 10)	Lx8|LINE|L1	49415.0	NM_025662	329777.0	Mm.331447	NM_025662	ENSMUSG00000039047	Pigk	3000001O05Rik|Gm38470|PIG-K	phosphatidylinositol glycan anchor biosynthesis, class K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-28489204-2	chr6	28488704	28489704	+	939.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 1 of 23)	intron (NM_019776, intron 1 of 23)	8856.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-32163618-2	chr14	32163118	32164118	+	939.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033988, intron 1 of 9)	URR1B|DNA|hAT-Charlie	-1968.0	NM_001284319	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46546001-2	chr4	46545501	46546501	+	939.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 5 of 11)	B2_Mm2|SINE|B2	-9860.0	NM_029077	74735.0	Mm.240252	NM_029077	ENSMUSG00000039853	Trim14	5830400N10Rik|pub	tripartite motif-containing 14	protein-coding	0.0	5.5	0.0	0.0	0.0	1.0
Merged-chr13-21935479-3	chr13	21934969	21935969	+	939.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9625.0	NM_183014	193452.0	Mm.187446	NM_183014	ENSMUSG00000006720	Zfp184	4930500C15Rik	zinc finger protein 184 (Kruppel-like)	protein-coding	0.0	0.0	2.5	0.0	0.0	0.0
Merged-chr11-70648797-2	chr11	70648297	70649297	+	939.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316728, intron 3 of 9)	intron (NM_001316728, intron 3 of 9)	1510.0	NM_027445	70510.0	Mm.261818	NM_027445	ENSMUSG00000040746	Rnf167	0610010G05Rik|5730408C10Rik|AU019305|AV328608	ring finger protein 167	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9124306-2	chr4	9123806	9124806	+	939.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-144987.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr1-144247696-4	chr1	144247198	144248198	+	939.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015811, intron 3 of 4)	intron (NM_015811, intron 3 of 4)	1406.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10371597-4	chr17	10371106	10372106	+	939.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47004.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-9926282-4	chr2	9925789	9926789	+	939.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027748, intron 4 of 6)	intron (NM_027748, intron 4 of 6)	20140.0	NR_152218	100126244.0	Mm.86343	NR_152218		Gm13262	-	predicted gene 13262	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144585103-6	chr3	144584581	144585581	+	939.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053102, intron 2 of 4)	intron (NM_053102, intron 2 of 4)	14654.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-13052219-3	chr1	13051729	13052729	+	939.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61094.0	NM_172841	240726.0	Mm.24481	NM_172841	ENSMUSG00000025938	Slco5a1	4732454B15|A630033C23Rik|AA407151	solute carrier organic anion transporter family, member 5A1	protein-coding	0.0	0.0	0.5	2.0	1.5	0.0
Merged-chr4-32531636-3	chr4	32531141	32532141	+	939.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109661, intron 2 of 4)	intron (NM_001109661, intron 2 of 4)	40021.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102230220-3	chr7	102229725	102230725	+	939.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111937, intron 2 of 5)	intron (NR_111937, intron 2 of 5)	7197.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75642455-4	chr15	75641942	75642942	+	939.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	25758.0	NM_011759	22701.0	Mm.87210	NM_011759	ENSMUSG00000047003	Zfp41	CTfin92|Zfp-41	zinc finger protein 41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46883437-4	chr8	46882930	46883930	+	939.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103457.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95707700-4	chr3	95707201	95708201	+	939.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19784.0	NM_001301705	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	1.0	12.5	7.5	16.5	6.5	4.5
Merged-chr8-115571907-4	chr8	115571393	115572393	+	939.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	135001.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121721872-4	chr3	121721374	121722374	+	939.4249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1663.0	NM_010171	14066.0	Mm.273188	NM_010171	ENSMUSG00000028128	F3	AA409063|CD142|Cf-3|Cf3|TF	coagulation factor III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121996935-4	chr5	121996454	121997454	+	939.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007804, intron 2 of 22)	L1MC4a|LINE|L1	50871.0	NM_007804	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73263263-4	chr17	73262756	73263756	+	939.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136040.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr9-32694415-4	chr9	32693910	32694910	+	939.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1632.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	8.0	24.0	8.0	3.0	6.5	10.0
Merged-chr9-44460788-4	chr9	44460303	44461303	+	939.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6036.0	NM_009476	22269.0	Mm.4453	NM_009476	ENSMUSG00000041523	Upk2	AW491716|UPII	uroplakin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44484512-4	chr13	44484017	44485017	+	939.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44790.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	5.0	22.0	15.5	1.0	2.5	6.0
Merged-chr2-4591813-4	chr2	4591323	4592323	+	939.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 5 of 11)	MTEb|LTR|ERVL-MaLR	32069.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111411750-4	chr10	111411256	111412256	+	939.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61471.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20105525-4	chr10	20105014	20106014	+	939.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 18 of 29)	intron (NM_008580, intron 18 of 29)	-43406.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	6.0	27.5	21.0	14.5	24.5	20.5
Merged-chr1-146967669-4	chr1	146967157	146968157	+	939.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	469970.0	NM_001145807	215378.0	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-10883506-3	chr8	10883020	10884020	+	939.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1066.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3384583-3	chr19	3384091	3385091	+	939.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013495, exon 19 of 19)	3' UTR (NM_013495, exon 19 of 19)	-4266.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27344735-4	chr14	27344236	27345236	+	939.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	8699.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	7.5	16.0	10.5	4.5	25.5	0.5
Merged-chr1-131511274-4	chr1	131510759	131511759	+	939.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	16102.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	1.0	5.0	0.5	1.0	0.0	0.5
Merged-chr6-122595847-4	chr6	122595355	122596355	+	939.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031159, intron 3 of 7)	intron (NM_031159, intron 3 of 7)	6589.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	67.5	150.5	90.5	52.0	108.5	51.0
Merged-chr14-93674950-4	chr14	93674454	93675454	+	939.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081377, intron 2 of 4)	intron (NM_001081377, intron 2 of 4)	215715.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	2.5	12.5	7.0	3.0	7.0	7.0
Merged-chr14-70100852-4	chr14	70100339	70101339	+	939.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021328, intron 1 of 8)	intron (NM_021328, intron 1 of 8)	746.0	NM_001360404	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-56034608-4	chr14	56034108	56035108	+	939.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4113.0	NM_010782	17232.0	Mm.436621	NM_010782	ENSMUSG00000071361	Mcpt9	MMCP-1|MMCP-9|MMCP9	mast cell protease 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117177476-4	chr11	117176980	117177980	+	939.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22181.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65390566-2	chr5	65390066	65391066	+	939.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310612)	promoter-TSS (NM_001310612)	865.0	NM_011292	20005.0	Mm.300271	NM_011292	ENSMUSG00000047215	Rpl9	-	ribosomal protein L9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-12610121-2	chr10	12609621	12610621	+	939.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 50 of 73)	intron (NM_011682, intron 50 of 73)	251614.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	3.5	8.5	1.5	2.5	6.5	2.0
Merged-chr11-100327912-4	chr11	100327379	100328379	+	939.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6528.0	NM_010257	14459.0	Mm.4767	NM_010257	ENSMUSG00000017165	Gast	GAS	gastrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129792603-3	chr4	129792104	129793104	+	939.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-27875.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	2.0	73.5	58.0	9.5	18.5	19.0
Merged-chr17-30007076-3	chr17	30006579	30007579	+	939.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151443, intron 1 of 4)	intron (NR_151443, intron 1 of 4)	2040.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	6.5	9.0	20.0	13.0	8.0	11.0
Merged-chr1-172195318-3	chr1	172194838	172195838	+	939.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151641, exon 14 of 14)	non-coding (NR_151641, exon 14 of 14)	11466.0	NM_001329871	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	20.0	21.0	13.5	4.0	3.0	12.5
Merged-chr5-21331719-3	chr5	21331169	21332169	+	939.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 3 of 18)	intron (NM_029195, intron 3 of 18)	-41004.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139393035-3	chr5	139392538	139393538	+	939.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001362206, exon 2 of 2)	exon (NM_001362206, exon 2 of 2)	3134.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0.0	0.0	6.5	0.0	0.0	3.5
Merged-chr7-110122982-4	chr7	110122472	110123472	+	939.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009516, intron 1 of 10)	CpG	913.0	NM_009516	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72420977-4	chr8	72420472	72421472	+	939.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122832, intron 1 of 15)	CpG	502.0	NM_001122832	13859.0	Mm.288894	NM_007944	ENSMUSG00000006276	Eps15l1	9830147J04Rik|AI593686|Eps15-rs|Eps15R	epidermal growth factor receptor pathway substrate 15-like 1	protein-coding	51.5	68.5	67.0	26.5	67.0	49.0
Merged-chr16-23225310-4	chr16	23224838	23225838	+	939.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252505)	promoter-TSS (NM_001252505)	146.0	NR_152126	320099.0	Mm.326729	NR_152126		BC106179	-	cDNA sequence BC106179	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9638206-4	chr13	9637685	9638685	+	939.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 31 of 36)	(CA)n|Simple_repeat|Simple_repeat	125625.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72099460-3	chr6	72098953	72099953	+	939.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	1845.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157425911-3	chr2	157425409	157426409	+	939.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 1 of 13)	intron (NM_001025395, intron 1 of 13)	1616.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	3.0	2.5	3.5	4.0	1.5	6.5
Merged-chr7-45567913-3	chr7	45567397	45568397	+	939.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025330)	TTS (NM_025330)	-2256.0	NM_009737	12036.0	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat(m)|Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64212812-1	chr5	64212312	64213312	+	939.3333130000001	f0_balb.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-17545.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84085270-3	chr18	84084777	84085777	+	939.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081300, intron 1 of 1)	GC_rich|Low_complexity|Low_complexity	1285.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-47242609-4	chr13	47242121	47243121	+	939.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 6 of 7)	intron (NM_146042, intron 6 of 7)	48618.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-76269143-3	chr6	76268647	76269647	+	939.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-973330.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	7.0	3.5	9.0	12.0	23.0	7.5
Merged-chr8-61449033-3	chr8	61448548	61449548	+	939.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-38686.0	NM_145595	234309.0	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134099440-4	chr4	134098941	134099941	+	939.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13C2|LTR|ERVK	-3142.0	NR_045571	67586.0	Mm.282029	NM_026257	ENSMUSG00000012126	Ubxn11	4930506L07Rik|D4Bwg1540e|Soc|Soci|Ubxd5	UBX domain protein 11	protein-coding	77.0	244.0	123.5	81.0	164.5	121.5
Merged-chr4-128670739-4	chr4	128670224	128671224	+	939.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	16022.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78297776-4	chr10	78297288	78298288	+	939.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053014, intron 2 of 9)	intron (NM_053014, intron 2 of 9)	42419.0	NR_106119	102465765.0		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135446150-4	chr5	135445649	135446649	+	939.30835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 8 of 30)	L1MC3|LINE|L1	-51603.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128525287-4	chr10	128524819	128525819	+	939.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011843, intron 1 of 30)	CpG	540.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127397919-4	chr2	127397427	127398427	+	939.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27272.0	NM_001081089	215456.0	Mm.440454	NM_001081089	ENSMUSG00000046338	Gpat2	A530057A03Rik|Gm116|xGPAT1	glycerol-3-phosphate acyltransferase 2, mitochondrial	protein-coding	28.0	26.0	11.5	0.5	39.5	20.0
Merged-chr17-5806128-4	chr17	5805521	5806521	+	939.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6531.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132304207-4	chr7	132303714	132304714	+	939.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029935, intron 1 of 7)	MTEb|LTR|ERVL-MaLR	-11450.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38651666-4	chr15	38651168	38652168	+	939.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-10236.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191199241-3	chr1	191198725	191199725	+	939.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15892.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80671611-3	chr15	80671120	80672120	+	939.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145986)	promoter-TSS (NM_145986)	-227.0	NM_145986	213956.0	Mm.132439	NM_145986	ENSMUSG00000022408	Fam83f	AW544981	family with sequence similarity 83, member F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40221726-4	chr12	40221234	40222234	+	939.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_035459)	TTS (NR_035459)	1077.0	NR_035459	100316693.0		NR_035459	ENSMUSG00000089371	Mir1938	mir-1938|mmu-mir-1938	microRNA 1938	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-43742876-4	chr10	43742370	43743370	+	939.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-3288.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-28517956-4	chr16	28517483	28518483	+	939.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010199, intron 2 of 5)	intron (NM_010199, intron 2 of 5)	46512.0	NM_001357064	14167.0	Mm.7996	NM_010199	ENSMUSG00000022523	Fgf12	AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1	fibroblast growth factor 12	protein-coding	0.0	0.0	1.0	7.5	23.0	6.0
Merged-chr13-24599806-4	chr13	24599308	24600308	+	939.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_024599, intron 1 of 1)	intron (NR_024599, intron 1 of 1)	4959.0	NR_024599	76024.0	Mm.440710	NR_024599		Gm11346	5830431A10Rik|AI447617|Gm11347	X-linked lymphocyte-regulated 5 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-145104179-2	chr3	145103679	145104679	+	939.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5073.0	NM_178697	229933.0	Mm.331420	NM_178697	ENSMUSG00000036960	Clca2	4732440A06|AI586120|Clca5	chloride channel accessory 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114859551-2	chr6	114859051	114860051	+	939.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028835, exon 19 of 19)	3' UTR (NM_028835, exon 19 of 19)	62270.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81534139-4	chr15	81533642	81534642	+	939.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-52072.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	28.5	132.0	81.5	57.0	107.0	68.0
Merged-chr8-33655467-4	chr8	33654990	33655990	+	939.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010344, intron 1 of 12)	intron (NM_010344, intron 1 of 12)	2252.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	66.0	100.5	76.0	14.5	18.0	26.0
Merged-chr3-103393063-2	chr3	103392563	103393563	+	939.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	113770.0	NM_053170	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99632971-4	chr5	99632474	99633474	+	939.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	96086.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98817524-2	chr7	98817024	98818024	+	939.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17588.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-3573956-4	chr13	3573457	3574457	+	939.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_134063, exon 14 of 20)	exon (NM_134063, exon 14 of 20)	35882.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	9.0	11.0	1.5	3.0	2.5	0.0
Merged-chr19-53327950-2	chr19	53327450	53328450	+	939.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	intron (NM_001360348, intron 1 of 5)	-1463.0	NM_010847	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57176487-4	chr16	57175996	57176996	+	939.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 15 of 17)	intron (NM_026254, intron 15 of 17)	-9164.0	NM_023175	52633.0	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146584221-4	chr3	146583783	146584783	+	939.238098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019957, intron 6 of 6)	intron (NM_019957, intron 6 of 6)	-12866.0	NM_009474	22262.0	Mm.10865	NM_009474	ENSMUSG00000028186	Uox	AI663847	urate oxidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116164176-4	chr9	116163666	116164666	+	939.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009371, intron 1 of 7)	intron (NM_009371, intron 1 of 7)	11197.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	10.5	25.0	12.5	13.0	26.0	19.5
Merged-chr12-25189218-3	chr12	25188764	25189764	+	939.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60090.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.0	0.0	0.0	0.0	1.0	0.5
Merged-chr4-135679584-3	chr4	135679094	135680094	+	939.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6863.0	NM_174851	242700.0	Mm.259623	NM_174851	ENSMUSG00000062157	Ifnlr1	CRF2-12|Il28ra	interferon lambda receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7992797-4	chr10	7992287	7993287	+	939.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36664.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137370606-4	chr4	137370151	137371151	+	939.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-12892.0	NM_001243769	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	72.5	139.0	72.5	48.5	127.0	74.5
Merged-chr13-64181123-3	chr13	64180652	64181652	+	939.2000119999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019986, intron 5 of 7)	intron (NM_019986, intron 5 of 7)	19286.0	NM_019986	56541.0	Mm.40989	NM_019986	ENSMUSG00000021476	Habp4	4933413D03Rik|4933428J01Rik	hyaluronic acid binding protein 4	protein-coding	0.0	7.0	9.0	8.5	8.0	6.0
Merged-chr3-127498982-6	chr3	127498524	127499524	+	939.194458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001327938)	promoter-TSS (NM_001327938)	91.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	35.0	91.5	105.0	5.0	2.0	6.5
Merged-chr4-101185469-4	chr4	101184969	101185969	+	939.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 4 of 24)	intron (NM_146145, intron 4 of 24)	79813.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21707231-4	chr14	21706832	21707832	+	939.1726070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013826, intron 1 of 3)	intron (NM_001013826, intron 1 of 3)	7244.0	NM_001013826	435391.0	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	6.5	14.0	19.0	14.0	12.5	9.5
Merged-chr6-21973658-4	chr6	21973182	21974182	+	939.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023626, exon 12 of 12)	exon (NM_023626, exon 12 of 12)	-12228.0	NM_001081351	214642.0	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80165872-4	chr10	80165330	80166330	+	939.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-2009.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-45283329-3	chr16	45282816	45283816	+	939.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER67D|LTR|ERV1	58979.0	NM_177584	208154.0	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	5.5	1.0	1.0	5.5	1.0	1.0
Merged-chr8-88638897-3	chr8	88638410	88639410	+	939.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2782.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	0.0	1.0	3.0	0.0	4.5	0.5
Merged-chr6-99252963-4	chr6	99252460	99253460	+	939.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	13555.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136430352-4	chr1	136429859	136430859	+	939.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026500, intron 4 of 7)	intron (NM_026500, intron 4 of 7)	-14840.0	NR_024328	320054.0	Mm.208000	NR_024328	ENSMUSG00000097403	9230116N13Rik	-	RIKEN cDNA 9230116N13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97246500-3	chr7	97246120	97247120	+	939.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 2 of 9)	intron (NM_001162477, intron 2 of 9)	79344.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	15.5	21.0	7.5	12.0	21.5	8.0
Merged-chr19-9938320-3	chr19	9937834	9938834	+	939.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38801.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	21.0	56.0	34.0	29.0	58.5	32.5
Merged-chr18-34259315-4	chr18	34258830	34259830	+	939.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360979, intron 1 of 15)	B3A|SINE|B2	11636.0	NM_001360979	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	0.0	17.5	3.0	5.5	8.5	0.5
Merged-chr10-40882374-6	chr10	40881913	40882913	+	939.154785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027879, intron 1 of 14)	intron (NM_027879, intron 1 of 14)	730.0	NM_027879	71713.0	Mm.46063	NM_027879	ENSMUSG00000038446	Cdc40	1200003H23Rik|EHB3|PRP17	cell division cycle 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-115092238-4	chr14	115091728	115092728	+	939.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175500)	promoter-TSS (NM_175500)	13.0	NM_175500	103978.0	Mm.320791	NM_175500	ENSMUSG00000022112	Gpc5	A230034F01Rik	glypican 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122038767-3	chr10	122038271	122039271	+	939.1333619999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081037, intron 1 of 21)	MLT1J|LTR|ERVL-MaLR	8544.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	3.5	0.0	0.0	2.0	0.0	0.0
Merged-chr4-148676393-4	chr4	148675899	148676899	+	939.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33082.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	72.0	260.0	91.5	6.0	56.5	38.5
Merged-chr11-11820419-4	chr11	11819936	11820936	+	939.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016672, intron 12 of 14)	intron (NM_016672, intron 12 of 14)	-11474.0	NM_001163360	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	2.0	0.5	0.0	0.0	0.5	0.0
Merged-chr8-79150703-4	chr8	79150198	79151198	+	939.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 8 of 14)	intron (NM_001294279, intron 8 of 14)	97885.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34865383-4	chr18	34864941	34865941	+	939.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007913)	TTS (NM_007913)	4234.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95157859-4	chr4	95157345	95158345	+	939.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105623.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-164075442-3	chr1	164074947	164075947	+	939.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164059, intron 6 of 7)	intron (NM_001164059, intron 6 of 7)	13371.0	NM_011346	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44400336-4	chr10	44399835	44400835	+	939.1083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40659.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-17597298-7	chr15	17596814	17597814	+	939.1047359999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	772313.0	NR_045711	70886.0	Mm.399021	NR_045711	ENSMUSG00000098150	4921515E04Rik	-	RIKEN cDNA 4921515E04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129001578-4	chr6	129001056	129002056	+	939.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015455, intron 1 of 2)	B3|SINE|B2	8595.0	NR_015455	408064.0	Mm.172429	NR_015455		BC064078	-	cDNA sequence BC064078	ncRNA	2.0	0.0	0.0	2.0	0.0	0.0
Merged-chr2-113391178-4	chr2	113390683	113391683	+	939.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285458, intron 2 of 16)	intron (NM_001285458, intron 2 of 16)	-49881.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-63258374-4	chr13	63257864	63258864	+	939.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	18335.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	1.0	17.0	8.0	3.5	8.5	15.5
Merged-chr14-102795930-4	chr14	102795426	102796426	+	939.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	186706.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-97929178-4	chr4	97928687	97929687	+	939.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	151561.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35553390-4	chr12	35552958	35553958	+	939.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18469.0	NM_001314027	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	21.5	49.5	43.5	33.0	41.0	71.5
Merged-chr5-107763841-4	chr5	107763338	107764338	+	939.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007964, intron 17 of 17)	intron (NM_007964, intron 17 of 17)	-38033.0	NM_001267621	14581.0	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-91640423-4	chr13	91639927	91640927	+	939.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 4 of 15)	intron (NM_001360776, intron 4 of 15)	-101094.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	3.0	4.5	4.5	17.0	40.5	25.5
Merged-chr18-24205477-3	chr18	24204976	24205976	+	939.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160404)	promoter-TSS (NM_001160404)	132.0	NM_013814	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5072076-4	chr19	5071551	5072551	+	939.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3973.0	NM_054042	70445.0	Mm.29597	NM_054042	ENSMUSG00000056481	Cd248	2610111G01Rik|AI842296|Cd164l1|Tem1	CD248 antigen, endosialin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-115731795-4	chr4	115731306	115732306	+	939.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6267.0	NM_172698	230648.0	Mm.283565	NM_172698	ENSMUSG00000034210	Efcab14	4732418C07Rik	EF-hand calcium binding domain 14	protein-coding	1.5	1.0	1.5	1.5	1.0	1.5
Merged-chr11-17727814-3	chr11	17727308	17728308	+	939.0277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	226067.0	NM_026576	68145.0	Mm.178684	NM_026576	ENSMUSG00000016984	Etaa1	5730466H23Rik|AA672646	Ewing tumor-associated antigen 1	protein-coding	2.5	13.5	1.0	9.0	4.5	10.0
Merged-chr6-108759565-4	chr6	108759066	108760066	+	939.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23493.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	1.5	0.0	2.5	3.0	14.5	6.5
Merged-chr11-119440465-4	chr11	119439966	119440966	+	939.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49994.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	2.0	4.5	7.0	2.0	4.5	7.0
Merged-chr1-36861833-2	chr1	36861333	36862333	+	939.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 4 of 40)	intron (NM_018872, intron 4 of 40)	77694.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24509109-2	chr13	24508609	24509609	+	939.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73080.0	NM_001286100	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-149624032-1	chr3	149623532	149624532	+	939.0	f0_balb.idr	Intergenic	Intergenic	349295.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32362204-2	chr2	32361704	32362704	+	939.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028412)	promoter-TSS (NM_028412)	-806.0	NM_001252538	68379.0	Mm.170508	NM_028412	ENSMUSG00000039205	Ciz1	0610038H21Rik|2900056O04Rik|LSFR1|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17729717-2	chr16	17729217	17730217	+	939.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6770.0	NM_001040683	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120443577-2	chr11	120443077	120444077	+	939.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145363, intron 1 of 2)	intron (NM_145363, intron 1 of 2)	946.0	NM_145363	208634.0	Mm.209875	NM_145363	ENSMUSG00000039691	Tspan10	Ocsp	tetraspanin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-3230320-2	chr17	3229808	3230808	+	939.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96265.0	NM_001122998	24001.0	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	13.0	0.0	2.0	8.5	0.0	0.0
Merged-chr18-65696526-2	chr18	65696037	65697037	+	939.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-1731.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	6.5	23.5	18.0	31.0	26.0	41.0
Merged-chr14-121927787-1	chr14	121927287	121928287	+	939.0	f1_balb.idr	intron (NM_026861, intron 4 of 8)	intron (NM_026861, intron 4 of 8)	-12013.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	2.5	5.5	2.5	0.0	1.5	14.0
Merged-chr16-44362811-2	chr16	44362311	44363311	+	939.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144550, intron 4 of 17)	L1Md_F2|LINE|L1	15410.0	NM_144550	212514.0	Mm.24035	NM_144550	ENSMUSG00000043065	Spice1	Ccdc52|D16Ertd480e	spindle and centriole associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45455361-2	chr13	45454861	45455861	+	939.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52083.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34684025-3	chr13	34683522	34684522	+	939.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	31099.0	NR_105041	101056149.0	Mm.421309	NR_105041	ENSMUSG00000086786	Gm15908	-	predicted gene 15908	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45722818-2	chr7	45722349	45723349	+	939.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033170, intron 1 of 4)	intron (NM_001033170, intron 1 of 4)	1629.0	NM_001033170	73813.0	Mm.322591	NM_001033170	ENSMUSG00000054161	Fam83e	4930403C10Rik	family with sequence similarity 83, member E	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr15-50695728-4	chr15	50695222	50696222	+	939.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	193327.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	5.5	8.0	3.0	1.0	6.5	7.0
Merged-chr10-98608237-2	chr10	98607737	98608737	+	939.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-256370.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24433616-4	chr16	24433109	24434109	+	939.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 1 of 12)	intron (NM_178665, intron 1 of 12)	-14482.0	NM_001145952	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101300577-3	chr7	101300064	101301064	+	939.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152152, intron 1 of 16)	intron (NR_152152, intron 1 of 16)	1524.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	3.0	0.0	4.5	3.0	0.0	4.5
Merged-chr14-76415550-9	chr14	76415033	76416033	+	939.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207652)	promoter-TSS (NM_207652)	-288.0	NM_207652	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143154898-2	chr7	143154398	143155398	+	939.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008434, intron 2 of 15)	intron (NM_008434, intron 2 of 15)	47644.0	NM_008434	16535.0	Mm.439769	NM_008434	ENSMUSG00000009545	Kcnq1	AW559127|KVLQT1|Kcna9	potassium voltage-gated channel, subfamily Q, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133157392-4	chr4	133156888	133157888	+	939.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	26755.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	176.5	313.5	260.0	80.5	178.0	185.0
Merged-chr5-115486872-2	chr5	115486372	115487372	+	939.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2388.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	1.0	0.0	1.0	2.0	0.0	1.0
Merged-chr7-89405150-3	chr7	89404669	89405669	+	939.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360746)	promoter-TSS (NM_001360746)	803.0	NM_008055	14366.0	Mm.86755	NM_008055	ENSMUSG00000049791	Fzd4	Fz4	frizzled class receptor 4	protein-coding	1.0	2.5	7.5	0.0	9.0	4.5
Merged-chr12-76534963-1	chr12	76534463	76535463	+	939.0	f0_balb.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	1403.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33956243-1	chr17	33955743	33956743	+	939.0	f0_balb.idr	promoter-TSS (NM_011296)	promoter-TSS (NM_011296)	153.0	NM_001357329	224705.0	Mm.448614	NM_172620	ENSMUSG00000024319	Vps52	ARE1|D130068D18|D430041K17Rik|SAC2|Sacm2l|tclw5	VPS52 GARP complex subunit	protein-coding	49.5	76.5	55.0	32.0	85.5	55.5
Merged-chr17-44988063-2	chr17	44987563	44988563	+	939.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178652, intron 3 of 11)	intron (NM_178652, intron 3 of 11)	-107178.0	NM_029257	75341.0	Mm.386821	NM_029257		4930564C03Rik	-	RIKEN cDNA 4930564C03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3910779-2	chr12	3910279	3911279	+	939.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001271753, exon 23 of 23)	3' UTR (NM_001271753, exon 23 of 23)	19035.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37428762-3	chr19	37428301	37429301	+	939.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-6040.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129840254-1	chr4	129839754	129840754	+	939.0	f0_balb.idr	intron (NM_008974, intron 2 of 5)	intron (NM_008974, intron 2 of 5)	19546.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	42.5	46.0	31.5	27.5	58.5	46.5
Merged-chr13-109441061-3	chr13	109440597	109441597	+	939.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	116353.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	2.5	1.5	4.5	0.0	6.5	1.5
Merged-chr6-47781761-4	chr6	47781263	47782263	+	938.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21889.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	26.5	68.0	33.0	14.5	76.5	34.5
Merged-chr12-35317312-4	chr12	35316864	35317864	+	938.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122467.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	34.0	37.5	65.0	35.0	54.0	42.5
Merged-chr19-42094705-3	chr19	42094179	42095179	+	938.9722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145501, intron 1 of 8)	intron (NM_145501, intron 1 of 8)	4244.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	21.5	14.5	1.5	25.5	26.0	24.0
Merged-chr19-17333980-4	chr19	17333470	17334470	+	938.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	5535.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	41.5	105.5	102.5	9.5	15.5	28.5
Merged-chr3-8245922-4	chr3	8245407	8246407	+	938.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	217191.0	NR_033512	620966.0	Mm.301719	NR_033512		Gm6194	1700003N22Rik|EG620966	transmembrane protein 189 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-113761830-4	chr11	113761347	113762347	+	938.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10032.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17643014-4	chr6	17642534	17643534	+	938.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007604, intron 1 of 9)	intron (NM_007604, intron 1 of 9)	6024.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	51.5	27.0	30.0	34.0	63.5	37.5
Merged-chr7-47025638-4	chr7	47025148	47026148	+	938.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17234.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60933042-4	chr10	60932539	60933539	+	938.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033616, intron 1 of 2)	intron (NR_033616, intron 1 of 2)	5093.0	NR_033616	73616.0	Mm.159038	NR_033616	ENSMUSG00000037247	Pldi	1700125F08Rik|Poldi	polymorphic derived intron containing	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-53980059-3	chr10	53979556	53980556	+	938.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 5 of 12)	intron (NM_008548, intron 5 of 12)	95740.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57728515-4	chr10	57728016	57729016	+	938.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039050, intron 4 of 4)	intron (NM_001039050, intron 4 of 4)	-56407.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28433236-4	chr17	28432734	28433734	+	938.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 3 of 10)	B4A|SINE|B4	52915.0	NM_010220	14229.0	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	2.0	6.0	3.5	1.5	1.5	5.5
Merged-chr16-33829565-4	chr16	33829030	33830030	+	938.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010580)	promoter-TSS (NM_010580)	-135.0	NM_010580	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124909956-4	chr2	124909457	124910457	+	938.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-158170.0	NM_175034	317750.0	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78352368-4	chr15	78351886	78352886	+	938.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3787.0	NR_106137	102465776.0		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	2.0	0.5	1.0	8.5	3.5	1.0
Merged-chr11-73224160-3	chr11	73223660	73224660	+	938.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029031, exon 7 of 7)	3' UTR (NM_029031, exon 7 of 7)	-9989.0	NM_001001445	193034.0	Mm.447485	NM_001001445	ENSMUSG00000005952	Trpv1	OTRPC1|TRPV1alpha|TRPV1beta|VR-1|Vr1	transient receptor potential cation channel, subfamily V, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52580579-4	chr13	52580089	52581089	+	938.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2848.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-66822698-4	chr4	66822212	66823212	+	938.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4839.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	16.5	10.0	7.0	5.0	6.0	6.5
Merged-chr17-6055113-2	chr17	6054626	6055626	+	938.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360148, intron 10 of 15)	intron (NM_001360148, intron 10 of 15)	24613.0	NM_001111017	321007.0	Mm.5548	NM_177311	ENSMUSG00000015659	Serac1	4930511N22Rik|D17Ertd141e	serine active site containing 1	protein-coding	2.0	0.5	0.5	4.5	5.0	8.5
Merged-chr13-73970701-4	chr13	73970217	73971217	+	938.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153830, intron 2 of 9)	intron (NR_153830, intron 2 of 9)	6866.0	NM_027704	71164.0	Mm.66995	NM_027704	ENSMUSG00000069189	Zdhhc11	4933421L13Rik|DHHC-11|Zdhhc20	zinc finger, DHHC domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31090004-4	chr17	31089494	31090494	+	938.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	32300.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	2.0	11.5	20.5	0.0	11.0	17.0
Merged-chr6-13073182-4	chr6	13072673	13073673	+	938.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027992, intron 3 of 8)	L2|LINE|L2	3414.0	NM_027992	71900.0	Mm.27742	NM_027992	ENSMUSG00000029571	Tmem106b	2310036D22Rik|5830455K21Rik|6430519M21Rik|AI428776|AI661344	transmembrane protein 106B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29818929-4	chr7	29818402	29819402	+	938.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145880, intron 1 of 4)	intron (NM_001145880, intron 1 of 4)	2830.0	NM_001145880	233056.0	Mm.224766	NM_146185	ENSMUSG00000011427	Zfp790	6330581L23Rik	zinc finger protein 790	protein-coding	23.0	25.5	34.5	10.0	24.0	24.5
Merged-chr4-128806892-4	chr4	128806465	128807465	+	938.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081098)	promoter-TSS (NM_001081098)	-853.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-85246745-2	chr2	85246221	85247221	+	938.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50022.0	NM_001033346	241528.0	Mm.291095	NM_001033346	ENSMUSG00000075224	Lrrc55	A330097E02Rik|Gm351	leucine rich repeat containing 55	protein-coding	7.5	0.5	2.5	15.0	7.0	0.5
Merged-chr4-136172725-2	chr4	136172225	136173225	+	938.833374	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177733, exon 1 of 7)	5' UTR (NM_177733, exon 1 of 7)	451.0	NM_177733	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-36122117-2	chr8	36121574	36122574	+	938.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172911, intron 3 of 5)	intron (NM_172911, intron 3 of 5)	27246.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	45.5	62.0	45.0	47.0	77.0	55.5
Merged-chr12-80131732-2	chr12	80131232	80132232	+	938.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_033514, intron 2 of 2)	intron (NR_033514, intron 2 of 2)	1112.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45087181-2	chr2	45086681	45087681	+	938.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	23096.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-83448008-3	chr9	83447495	83448495	+	938.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102437, intron 2 of 2)	intron (NR_102437, intron 2 of 2)	-6868.0	NM_029434	75782.0	Mm.199698	NM_027448	ENSMUSG00000032258	Lca5	4930431B11Rik|5730406O13Rik|AV274874|ORF64	Leber congenital amaurosis 5 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53568023-4	chr19	53567541	53568541	+	938.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4-int|LTR|ERVK	-32355.0	NM_007790	13006.0	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	0.0	0.0	3.5	0.0	0.0	0.0
Merged-chr6-5165155-4	chr6	5164705	5165705	+	938.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_181595, exon 16 of 16)	3' UTR (NM_181595, exon 16 of 16)	28741.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-99068658-4	chr11	99068182	99069182	+	938.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172564, intron 12 of 12)	B4A|SINE|B4	20624.0	NM_172564	217169.0	Mm.262067	NM_172564	ENSMUSG00000017607	Tns4	9930017A07Rik|AA589547|AU016405|Cten	tensin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155764894-4	chr2	155764481	155765481	+	938.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10361.0	NM_010808	17391.0	Mm.389325	NM_010808	ENSMUSG00000027612	Mmp24	AU040325|MMP-21|MT5-MMP|MT5MMP|MTMMP5	matrix metallopeptidase 24	protein-coding	7.0	11.0	6.0	9.5	19.5	9.5
Merged-chr6-17065585-4	chr6	17065085	17066085	+	938.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207176, intron 1 of 6)	intron (NM_207176, intron 1 of 6)	436.0	NM_207176	21753.0	Mm.436548	NM_011570	ENSMUSG00000029552	Tes	D6Ertd352e|TESS|Tes1|Tes2|testin2	testis derived transcript	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35850547-4	chr8	35850044	35851044	+	938.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23985.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	0.0	4.0	7.5	0.0	0.0	1.0
Merged-chr7-99674430-3	chr7	99673969	99674969	+	938.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175316, intron 7 of 13)	intron (NM_175316, intron 7 of 13)	21340.0	NM_001252531	101488.0	Mm.11249	NM_175316	ENSMUSG00000030737	Slco2b1	AI060904|AI852653|OATP-B|Slc21a9	solute carrier organic anion transporter family, member 2b1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75600353-3	chr15	75599846	75600846	+	938.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3716.0	NM_026730	68453.0	Mm.46367	NM_026730	ENSMUSG00000022579	Gpihbp1	1110002J19Rik|GPI-HBP1	GPI-anchored HDL-binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-103472886-4	chr5	103472389	103473389	+	938.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011204, intron 2 of 47)	intron (NM_011204, intron 2 of 47)	47697.0	NM_011204	19249.0	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79854639-4	chr3	79854141	79855141	+	938.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11979.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	2.5	1.0	5.5	0.0	4.5	0.0
Merged-chr8-108704618-7	chr8	108704141	108705141	+	938.8095089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-10003.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24876756-4	chr5	24876278	24877278	+	938.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 9 of 15)	intron (NM_145401, intron 9 of 15)	-25791.0	NR_040684	71161.0	Mm.443533	NR_040684	ENSMUSG00000086446	Prkag2os1	4933426D04Rik	protein kinase, AMP-activated, gamma 2 non-catalytic subunit, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9556046-4	chr18	9555551	9556551	+	938.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63418.0	NM_007593	26369.0	Mm.195831	NM_007593	ENSMUSG00000050996	Cetn1	caltractin	centrin 1	protein-coding	2.0	13.0	15.0	2.0	13.0	15.0
Merged-chr1-193905936-3	chr1	193905428	193906428	+	938.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	316831.0	NR_040477	74942.0	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32764950-4	chr12	32764455	32765455	+	938.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55380.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	5.5	11.5	8.0	2.5	22.0	5.5
Merged-chr9-46098961-4	chr9	46098450	46099450	+	938.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	86130.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32891347-3	chr17	32890846	32891846	+	938.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207245, intron 1 of 3)	intron (NM_207245, intron 1 of 3)	257.0	NM_207245	240066.0	Mm.26636	NM_207245	ENSMUSG00000095325	Zfp870	AI173952	zinc finger protein 870	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123682569-4	chr5	123682054	123683054	+	938.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359224, intron 1 of 18)	intron (NM_001359224, intron 1 of 18)	1807.0	NM_019765	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181188761-4	chr2	181188255	181189255	+	938.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_151465)	TTS (NR_151465)	1508.0	NM_001356427	66496.0	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3387387-4	chr5	3386893	3387893	+	938.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	43500.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47255103-2	chr19	47254603	47255603	+	938.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163480, intron 4 of 5)	intron (NM_001163480, intron 4 of 5)	18486.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	0.5	0.0	1.0	0.5	0.0	4.0
Merged-chr11-43569869-4	chr11	43569363	43570363	+	938.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045530, intron 3 of 5)	intron (NM_001045530, intron 3 of 5)	31699.0	NM_008375	16204.0	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95825093-4	chr11	95824594	95825594	+	938.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153104, intron 1 of 2)	intron (NM_153104, intron 1 of 2)	594.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99127059-2	chr10	99126559	99127559	+	938.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 3 of 12)	intron (NR_153333, intron 3 of 12)	18924.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24389499-4	chr5	24389005	24390005	+	938.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002897, intron 5 of 13)	intron (NM_001002897, intron 5 of 13)	2638.0	NM_001002897	213948.0	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-33158417-3	chr19	33157922	33158922	+	938.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146342, intron 4 of 4)	MIRb|SINE|MIR	1310.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126754961-4	chr7	126754378	126755378	+	938.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-4748.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28293488-4	chr17	28292992	28293992	+	938.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 3 of 7)	ID_B1|SINE|B4	-19870.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126920568-4	chr8	126920099	126921099	+	938.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25322.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155383346-3	chr2	155382858	155383858	+	938.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178111, intron 1 of 3)	intron (NM_178111, intron 1 of 3)	1502.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	2.0	25.5	17.0	3.5	13.5	13.0
Merged-chr11-69681352-3	chr11	69680864	69681864	+	938.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163571, intron 1 of 10)	intron (NM_001163571, intron 1 of 10)	606.0	NM_030702	80886.0	Mm.284592	NM_030702	ENSMUSG00000005204	Senp3	AA408656|Smt3ip|Smt3ip1	SUMO/sentrin specific peptidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5024519-3	chr19	5023964	5024964	+	938.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007854, intron 1 of 11)	CpG	458.0	NM_007854	13340.0	Mm.4930	NM_007854	ENSMUSG00000024891	Slc29a2	Der12|Ent2|Hnp36	solute carrier family 29 (nucleoside transporters), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-107687969-4	chr5	107687487	107688487	+	938.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	15493.0	NR_045871	654809.0	Mm.399159	NR_045871	ENSMUSG00000106333	4930428O21Rik	-	RIKEN cDNA 4930428O21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152448796-4	chr4	152448297	152449297	+	938.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252655)	promoter-TSS (NM_001252655)	58.0	NM_001252655	16498.0	Mm.388924	NM_010598	ENSMUSG00000028931	Kcnab2	F5|I2rf5|Kcnb3|kv-beta-2	potassium voltage-gated channel, shaker-related subfamily, beta member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53796068-3	chr11	53795561	53796561	+	938.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	25588.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-93265661-4	chr5	93265164	93266164	+	938.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1909.0	NM_007635	12452.0	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	9.5	79.0	37.0	16.5	75.0	42.0
Merged-chr5-105416288-6	chr5	105415789	105416789	+	938.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033550, intron 1 of 4)	CpG	514.0	NM_001033550	433926.0	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	2210408K08Rik|R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141638835-2	chr7	141638335	141639335	+	938.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330001, intron 31 of 33)	intron (NM_001330001, intron 31 of 33)	16484.0	NM_001330001	353328.0	Mm.246621	NM_181729	ENSMUSG00000048191	Muc6	-	mucin 6, gastric	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-37908281-4	chr18	37907768	37908768	+	938.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305980, intron 1 of 27)	intron (NM_001305980, intron 1 of 27)	27208.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106136735-3	chr8	106136270	106137270	+	938.633301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_176838, exon 1 of 15)	5' UTR (NM_176838, exon 1 of 15)	204.0	NM_176838	77411.0	Mm.183003	NM_176838	ENSMUSG00000084128	Esrp2	9530027K23Rik|Rbm35b	epithelial splicing regulatory protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-144931993-4	chr5	144931483	144932483	+	938.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038627, intron 1 of 17)	intron (NM_001038627, intron 1 of 17)	33847.0	NM_001038627	75788.0	Mm.27735	NM_029438	ENSMUSG00000038780	Smurf1	4930431E10Rik|mKIAA1625	SMAD specific E3 ubiquitin protein ligase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-96345327-4	chr16	96344777	96345777	+	938.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16480.0	NM_001177887	72058.0	Mm.119714	NM_028078	ENSMUSG00000000159	Igsf5	2010003D20Rik|JCAM|Jam4	immunoglobulin superfamily, member 5	protein-coding	0.5	6.0	8.5	1.5	2.5	1.5
Merged-chr9-105198901-2	chr9	105198389	105199389	+	938.625	f0_balb.idr|f1_balb.idr	intron (NM_172461, intron 15 of 15)	intron (NM_172461, intron 15 of 15)	-53807.0	NM_028562	73532.0	Mm.23516	NM_028562	ENSMUSG00000032566	1700080E11Rik	AI429110|Tseg8	RIKEN cDNA 1700080E11 gene	protein-coding	6.5	9.5	2.0	4.0	7.0	11.5
Merged-chr1-131126645-3	chr1	131126154	131127154	+	938.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11580.0	NM_145508	226419.0	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	2.5	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73765438-4	chr13	73764936	73765936	+	938.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 1 of 24)	intron (NM_001360694, intron 1 of 24)	1739.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136885499-5	chr4	136884973	136885973	+	938.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009777, intron 1 of 2)	intron (NM_009777, intron 1 of 2)	704.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	96.5	348.5	229.5	124.0	301.0	198.5
Merged-chr14-63126632-2	chr14	63126132	63127132	+	938.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	4170.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125600747-4	chr7	125600246	125601246	+	938.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2683.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	99.5	143.0	168.0	70.0	103.0	80.5
Merged-chr13-63254080-3	chr13	63253581	63254581	+	938.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	14052.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127035669-4	chr3	127035160	127036160	+	938.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 10 of 47)	L2|LINE|L2	-37208.0	NM_178655	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	3.0	14.0	17.5	12.0	7.0	3.0
Merged-chr2-18087822-4	chr2	18087325	18088325	+	938.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010804, intron 3 of 22)	RMER16_Mm|LTR|ERVK	23240.0	NM_001252561	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52698169-4	chr6	52697684	52698684	+	938.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15545.0	NM_025816	52440.0	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20753076-3	chr10	20752576	20753576	+	938.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27998.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153351529-3	chr2	153351029	153352029	+	938.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039939, intron 1 of 11)	intron (NM_001039939, intron 1 of 11)	5390.0	NM_001039939	228790.0	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75371134-3	chr7	75370627	75371627	+	938.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61865.0	NM_153579	64176.0	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126199866-4	chr7	126199381	126200381	+	938.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 1 of 23)	intron (NM_028816, intron 1 of 23)	620.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25389298-4	chr12	25388821	25389821	+	938.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	260147.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.0	5.0	0.0	0.0	5.0	2.0
Merged-chr7-142396293-2	chr7	142395793	142396793	+	938.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8423.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	12.5	30.5	22.5	8.5	23.0	13.5
Merged-chr5-139481305-2	chr5	139480805	139481805	+	938.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133349, intron 3 of 6)	B1_Mur1|SINE|Alu	3186.0	NM_133349	100494.0	Mm.24521	NM_133349	ENSMUSG00000053581	Zfand2a	AA407930|AU016206|Airap	zinc finger, AN1-type domain 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11025095-2	chr8	11024595	11025595	+	938.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_046017, intron 1 of 4)	intron (NR_046017, intron 1 of 4)	-16665.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53109003-2	chr4	53108503	53109503	+	938.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 6 of 49)	intron (NM_013454, intron 6 of 49)	50892.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55460733-4	chr11	55460233	55461233	+	938.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 1 of 3)	intron (NM_009720, intron 1 of 3)	475.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70232112-4	chr12	70231613	70232613	+	938.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045174, exon 2 of 5)	non-coding (NR_045174, exon 2 of 5)	4272.0	NR_045174	414124.0	Mm.416164	NR_045174	ENSMUSG00000085298	F730035M05Rik	-	RIKEN cDNA F730035M05 gene	ncRNA	15.5	21.5	19.0	14.5	10.0	12.5
Merged-chr19-23045111-2	chr19	23044611	23045611	+	938.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96115.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	6.5	1.5	6.5	0.0	1.0	1.0
Merged-chr16-37869388-4	chr16	37868877	37869877	+	938.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177093, intron 1 of 3)	intron (NM_177093, intron 1 of 3)	977.0	NM_177093	320184.0	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64604706-2	chr17	64604206	64605206	+	938.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	3057.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157427944-2	chr2	157427444	157428444	+	938.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 1 of 13)	intron (NM_001025395, intron 1 of 13)	3651.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	9.0	30.5	12.0	13.0	49.5	29.0
Merged-chr2-33426143-4	chr2	33425641	33426641	+	938.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276332, intron 1 of 1)	intron (NM_001276332, intron 1 of 1)	5183.0	NM_001085507	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98871281-2	chr7	98870781	98871781	+	938.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32436.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180976363-2	chr1	180975863	180976863	+	938.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33845.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104602209-2	chr8	104601709	104602709	+	938.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001252628, exon 18 of 18)	exon (NM_001252628, exon 18 of 18)	10741.0	NM_001024606	382051.0	Mm.290750	NM_001024606	ENSMUSG00000048371	Pdp2	4833426J09Rik|Gm1705|mKIAA1348	pyruvate dehyrogenase phosphatase catalytic subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107482616-2	chr11	107482134	107483134	+	938.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025894, intron 1 of 10)	intron (NM_025894, intron 1 of 10)	3106.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	7.0	1.0	1.0	1.5	4.5	1.0
Merged-chr2-94405640-4	chr2	94405139	94406139	+	938.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183106, intron 1 of 24)	(CA)n|Simple_repeat|Simple_repeat	1050.0	NM_183106	74569.0	Mm.248504	NM_183106	ENSMUSG00000027194	Ttc17	9130020K17Rik|D2Bwg1005e	tetratricopeptide repeat domain 17	protein-coding	14.5	69.5	45.5	17.5	77.0	45.0
Merged-chr5-127616293-3	chr5	127615796	127616796	+	938.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133895, intron 1 of 7)	intron (NM_133895, intron 1 of 7)	1096.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-117936084-4	chr6	117935608	117936608	+	938.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033648, intron 2 of 8)	intron (NM_033648, intron 2 of 8)	1227.0	NM_001173372	108017.0	Mm.250392	NM_033648	ENSMUSG00000004988	Fxyd4	0610008I02Rik|AI267073|Chif	FXYD domain-containing ion transport regulator 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60211328-2	chr2	60210828	60211828	+	938.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020575, intron 1 of 9)	B1F1|SINE|Alu	1392.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-31924175-2	chr11	31923675	31924675	+	938.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026252, intron 5 of 9)	intron (NM_026252, intron 5 of 9)	-41458.0	NM_026262	67592.0	Mm.78654	NM_026262	ENSMUSG00000020299	4930524B15Rik	-	RIKEN cDNA 4930524B15 gene	protein-coding	0.0	4.0	3.5	0.0	4.0	5.0
Merged-chr1-62051566-3	chr1	62051035	62052035	+	938.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081050, intron 3 of 22)	intron (NM_001081050, intron 3 of 22)	84574.0	NR_151537	105243940.0		NR_151537		Pard3bos2	Gm12747	par-3 family cell polarity regulator beta, opposite strand 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-72570772-4	chr11	72570259	72571259	+	938.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20513.0	NM_029932	77577.0	Mm.46185	NM_029932	ENSMUSG00000020798	Spns3	9830002I17Rik	spinster homolog 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106809901-2	chr1	106809403	106810403	+	938.5	f0_balb.idr|f1_balb.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	-13178.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	2.0	3.0	1.0	0.0	3.0	0.0
Merged-chr16-33931716-2	chr16	33931216	33932216	+	938.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	ORR1F|LTR|ERVL-MaLR	35322.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-63932615-2	chr7	63932115	63933115	+	938.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	ORR1A2|LTR|ERVL-MaLR	6300.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	14.0	12.0	1.5	10.0	16.0	7.0
Merged-chr18-60713299-2	chr18	60712799	60713799	+	938.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001348101, exon 2 of 15)	5' UTR (NM_001348101, exon 2 of 15)	14267.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121427278-2	chr10	121426778	121427778	+	938.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	B3A|SINE|B2	48972.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	3.0	14.0	9.5	3.0	14.0	9.5
Merged-chr17-15706154-4	chr17	15705659	15706659	+	938.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007690, intron 1 of 35)	intron (NM_007690, intron 1 of 35)	1192.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	40.5	88.5	100.5	67.5	119.0	66.5
Merged-chr13-21222500-2	chr13	21222012	21223012	+	938.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42581.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	0.0	2.5	0.5	0.0	0.0	0.5
Merged-chr10-91209790-2	chr10	91209290	91210290	+	938.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151510, intron 3 of 3)	intron (NR_151510, intron 3 of 3)	10829.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91986990-2	chr2	91986417	91987417	+	938.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011957, intron 9 of 11)	intron (NM_011957, intron 9 of 11)	-23354.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	3.0	0.0	11.0	0.0	1.0	4.0
Merged-chr5-62846455-4	chr5	62845963	62846963	+	938.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 6 of 8)	intron (NM_001170705, intron 6 of 8)	32640.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	2.5	16.5	23.0	5.5	18.5	10.0
Merged-chr10-127119366-2	chr10	127118866	127119866	+	938.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177614, intron 4 of 13)	intron (NM_177614, intron 4 of 13)	1794.0	NM_177614	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24799530-2	chr13	24799030	24800030	+	938.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-2127.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91964692-2	chr16	91964192	91965192	+	938.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33062.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-42262501-2	chr6	42262001	42263001	+	938.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175408, intron 1 of 2)	intron (NM_175408, intron 1 of 2)	531.0	NM_175408	109218.0	Mm.480678	NM_175408	ENSMUSG00000071506	Tmem139	A930027H06Rik	transmembrane protein 139	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104629980-3	chr9	104629478	104630478	+	938.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	60495.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	44.5	79.5	60.5	46.5	91.5	61.0
Merged-chr4-138426884-4	chr4	138426387	138427387	+	938.4874880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7785.0	NM_026689	68350.0	Mm.103413	NM_026689	ENSMUSG00000041241	Mul1	0610009K11Rik|AV000801|Gide	mitochondrial ubiquitin ligase activator of NFKB 1	protein-coding	4.5	0.0	5.0	0.0	0.0	0.0
Merged-chr16-32060041-4	chr16	32059541	32060541	+	938.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177326, intron 1 of 14)	intron (NM_177326, intron 1 of 14)	19301.0	NM_177326	224105.0	Mm.234204	NM_177326	ENSMUSG00000022781	Pak2	5330420P17Rik|A130002K10Rik|AI836325|D16Ertd269e|PAK-2|mKIAA4182	p21 (RAC1) activated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83675610-4	chr17	83675098	83676098	+	938.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-30565.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-85172581-5	chr16	85172048	85173048	+	938.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	1159.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	0.0	15.0	11.5	13.5	20.5	9.0
Merged-chr19-32470227-6	chr19	32469720	32470720	+	938.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15549.0	NM_010799	17330.0	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72955049-4	chr6	72954543	72955543	+	938.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3189.0	NM_001039392	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	12.5	11.0	1.0	2.0	4.0	9.5
Merged-chr11-76605838-4	chr11	76605354	76606354	+	938.462524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-28115.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	29.0	90.0	39.5	19.0	43.0	34.5
Merged-chr8-40424224-3	chr8	40423710	40424710	+	938.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178395, intron 1 of 12)	CpG	395.0	NM_001357249	70546.0	Mm.34326	NM_178395	ENSMUSG00000039470	Zdhhc2	5730415P04Rik|6430583A19Rik|DHHC-2	zinc finger, DHHC domain containing 2	protein-coding	0.0	1.0	0.5	4.5	2.5	0.0
Merged-chr1-176827087-3	chr1	176826582	176827582	+	938.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 3 of 18)	intron (NM_001357390, intron 3 of 18)	9051.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	73.0	147.5	114.5	31.0	93.0	98.0
Merged-chr2-27247391-3	chr2	27246893	27247893	+	938.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138665)	promoter-TSS (NM_138665)	-90.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-125526186-3	chr1	125525680	125526680	+	938.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34415.0	NM_001356294	74150.0	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-45561925-3	chr16	45561432	45562432	+	938.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198106, intron 13 of 27)	intron (NM_198106, intron 13 of 27)	26666.0	NM_198106	208169.0	Mm.277437	NM_198106	ENSMUSG00000033210	Slc9c1	Gm610|NHE-10|Slc9a10|sNHE|spermNHE	solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1	protein-coding	14.0	22.5	18.0	0.0	19.5	4.5
Merged-chr8-123024455-3	chr8	123023940	123024940	+	938.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	17844.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0.0	4.5	6.5	0.5	3.5	3.5
Merged-chr5-31194111-4	chr5	31193638	31194638	+	938.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127355)	promoter-TSS (NM_001127355)	834.0	NM_153680	266781.0	Mm.6118	NM_153680	ENSMUSG00000029146	Snx17	5830447M19Rik|AI790646|D5Ertd260e|b2b1625.1Clo|mKIAA0064	sorting nexin 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-57191025-4	chr2	57190522	57191522	+	938.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	9191.0	NR_040633	75279.0	Mm.401987	NR_040633	ENSMUSG00000086396	4930555B11Rik	-	RIKEN cDNA 4930555B11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25553231-4	chr15	25552714	25553714	+	938.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69336.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108906985-3	chr12	108906478	108907478	+	938.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	12706.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49100609-4	chr11	49100117	49101117	+	938.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C-int|LTR|ERVK	13140.0	NM_146337	258334.0	Mm.390388	NM_146337	ENSMUSG00000047511	Olfr1396	MOR276-2	olfactory receptor 1396	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152265950-3	chr3	152265453	152266453	+	938.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357206)	promoter-TSS (NM_001357206)	-158.0	NM_001357206	68810.0	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-59216393-3	chr12	59215892	59216892	+	938.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033156, intron 1 of 3)	intron (NM_001033156, intron 1 of 3)	3091.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115638406-3	chr8	115637910	115638910	+	938.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68484.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110385663-4	chr7	110385157	110386157	+	938.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 17 of 40)	intron (NM_177324, intron 17 of 40)	163954.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-148989693-4	chr6	148989203	148990203	+	938.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177192, exon 21 of 21)	3' UTR (NM_177192, exon 21 of 21)	-43233.0	NM_001361398	56306.0	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Sinhcaf|Tera	family with sequence similarity 60, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165718532-4	chr1	165718014	165719014	+	938.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10420.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99381333-4	chr15	99380848	99381848	+	938.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-10866.0	NM_001310622	22379.0	Mm.29043	NM_011711	ENSMUSG00000023008	Fmnl3	2700073B04Rik|FBP11|Wbp3|mKIAA2014	formin-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88734319-4	chr15	88733823	88734823	+	938.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033274)	promoter-TSS (NM_001033274)	-104.0	NM_001033274	223770.0	Mm.254438	NM_001033274	ENSMUSG00000022387	Brd1	1110059H06Rik|AI316859|mKIAA4191	bromodomain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9457202-4	chr13	9456701	9457701	+	938.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	ORR1F|LTR|ERVL-MaLR	180676.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-94147239-4	chr1	94146725	94147725	+	938.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94672.0	NM_008798	18566.0	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110365253-2	chr11	110364753	110365753	+	938.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-27537.0	NM_147219	217265.0	Mm.41942	NM_147219	ENSMUSG00000018800	Abca5	ABC13|B930033A02Rik|mKIAA1888	ATP-binding cassette, sub-family A (ABC1), member 5	protein-coding	0.0	2.0	0.0	0.0	2.0	0.0
Merged-chr1-33908399-2	chr1	33907899	33908899	+	938.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310484)	promoter-TSS (NM_001310484)	174.0	NM_001276764	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20832344-2	chr14	20831965	20832965	+	938.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4197.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	2.0	17.5	6.0	2.5	9.5	6.0
Merged-chr6-115993876-3	chr6	115993449	115994449	+	938.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026376, exon 1 of 36)	exon (NM_026376, exon 1 of 36)	1056.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-49756343-3	chr18	49755837	49756837	+	938.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170960)	promoter-TSS (NM_001170960)	-736.0	NM_026854	68857.0	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9099342-4	chr4	9098846	9099846	+	938.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-169947.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88505266-3	chr15	88504762	88505762	+	938.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95040.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-70387545-3	chr16	70387052	70388052	+	938.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 2 of 15)	intron (NM_028803, intron 2 of 15)	73603.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	5.0	9.0	11.5	3.5	12.5	8.5
Merged-chr7-143180942-4	chr7	143180440	143181440	+	938.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008434, intron 2 of 15)	intron (NM_008434, intron 2 of 15)	73686.0	NM_008434	16535.0	Mm.439769	NM_008434	ENSMUSG00000009545	Kcnq1	AW559127|KVLQT1|Kcna9	potassium voltage-gated channel, subfamily Q, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr13-9249876-4	chr13	9249381	9250381	+	938.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-26644.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47610973-3	chr17	47610486	47611486	+	938.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020048)	promoter-TSS (NM_020048)	506.0	NM_016859	53414.0	Mm.472101	NM_016859	ENSMUSG00000023988	Bysl	Bys|Enp1	bystin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57593928-3	chr16	57593416	57594416	+	938.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025599, intron 1 of 9)	intron (NM_025599, intron 1 of 9)	12951.0	NM_025599	66497.0	Mm.425976	NM_025599	ENSMUSG00000022748	Cmss1	1110001A06Rik|2610528E23Rik|4930572F24Rik|AV099812|AV122629	cms small ribosomal subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59822259-4	chr4	59821702	59822702	+	938.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	RMER6A|LTR|ERVK	16552.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	3.0	9.5	10.5	2.5	12.5	12.0
Merged-chr12-35532259-3	chr12	35531730	35532730	+	938.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001314027, intron 1 of 9)	intron (NM_001314027, intron 1 of 9)	2759.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	7.5	15.5	18.0	15.0	11.0	14.0
Merged-chr3-121426522-3	chr3	121426037	121427037	+	938.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028044)	promoter-TSS (NM_028044)	-4.0	NM_028044	71994.0	Mm.275555	NM_028044	ENSMUSG00000053931	Cnn3	1600014M03Rik|C85854|Calpo3	calponin 3, acidic	protein-coding	2.5	3.5	0.0	5.0	2.0	0.0
Merged-chr7-73539200-5	chr7	73538653	73539653	+	938.320007	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_037569)	TTS (NR_037569)	2593.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135941160-2	chr4	135940678	135941678	+	938.2999880000001	f1_balb.idr|f1_c57bl6.idr	TTS (NM_024243)	TTS (NM_024243)	-5270.0	NM_008254	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84855299-4	chr12	84854813	84855813	+	938.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013589, intron 2 of 34)	intron (NM_013589, intron 2 of 34)	-20489.0	NR_028577	100303738.0	Mm.479389	NR_028577	ENSMUSG00000092130	D030025P21Rik	-	RIKEN cDNA D030025P21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100831187-4	chr12	100830680	100831680	+	938.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361023, intron 2 of 11)	intron (NM_001361023, intron 2 of 11)	52123.0	NM_145448	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86969801-4	chr17	86969346	86970346	+	938.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	6735.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	7.0	8.5	4.0	2.5	7.0	1.5
Merged-chr1-189792751-4	chr1	189792279	189793279	+	938.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008976, intron 2 of 18)	intron (NM_008976, intron 2 of 18)	64511.0	NM_008976	19250.0	Mm.4498	NM_008976	ENSMUSG00000026604	Ptpn14	C130080N23Rik|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51842189-2	chr13	51841689	51842689	+	938.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4486.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119178490-4	chr4	119177968	119178968	+	938.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013848, exon 13 of 13)	exon (NM_013848, exon 13 of 13)	-4273.0	NM_001145936	195522.0	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	12.5	10.0	25.0	4.0	0.0	1.5
Merged-chr10-67126464-4	chr10	67125977	67126977	+	938.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207221)	promoter-TSS (NM_207221)	-781.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75574163-2	chr11	75573663	75574663	+	938.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173388, exon 14 of 14)	3' UTR (NM_173388, exon 14 of 14)	-13916.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-58408189-4	chr10	58407697	58408697	+	938.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359116, intron 3 of 9)	MTD|LTR|ERVL-MaLR	13824.0	NM_001346676	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67504158-4	chr18	67503657	67504657	+	938.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194355, intron 8 of 14)	intron (NM_194355, intron 8 of 14)	39308.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	5.5	0.0	4.5	4.5	4.5	0.0
Merged-chr3-136795017-4	chr3	136794485	136795485	+	938.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	124919.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73725519-6	chr15	73725008	73726008	+	938.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001166388, exon 1 of 6)	5' UTR (NM_001166388, exon 1 of 6)	578.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98961160-4	chr11	98960688	98961688	+	938.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001176528, intron 1 of 7)	intron (NM_001176528, intron 1 of 7)	717.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-33041631-3	chr12	33041119	33042119	+	938.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024478, intron 15 of 19)	MIRb|SINE|MIR	51256.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	14.0	38.0	27.5	21.0	17.0	25.0
Merged-chr11-4220771-4	chr11	4220401	4221401	+	938.244019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028022, intron 5 of 8)	intron (NM_028022, intron 5 of 8)	2650.0	NM_028022	71962.0	Mm.7852	NM_028022	ENSMUSG00000020424	Gatsl3	2410008K03Rik|Castor1	GATS protein-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101742863-4	chr13	101742369	101743369	+	938.2416380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	25348.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24460006-4	chr7	24459508	24460508	+	938.2416380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2475.0	NM_011113	18793.0	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103186851-4	chr14	103186354	103187354	+	938.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207215, intron 49 of 84)	Lx6|LINE|L1	-87288.0	NM_001360342	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-186221722-3	chr1	186221306	186222306	+	938.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104496.0	NM_146106	226791.0	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	0.0	0.0	2.0	6.5	0.0	5.5
Merged-chr12-80867191-3	chr12	80866685	80867685	+	938.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 3 of 6)	intron (NM_001242419, intron 3 of 6)	57262.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-12172301-3	chr12	12171802	12172802	+	938.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89837.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0.0	4.0	2.5	12.0	4.5	6.5
Merged-chr5-64202882-3	chr5	64202382	64203382	+	938.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	L1MB8|LINE|L1	-27475.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-92437362-3	chr6	92436836	92437836	+	938.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134461, intron 2 of 7)	intron (NM_001134461, intron 2 of 7)	44056.0	NM_001134460	243548.0	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3659433-4	chr4	3658931	3659931	+	938.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040643, intron 3 of 3)	intron (NR_040643, intron 3 of 3)	2925.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	5.5	2.0	3.0	6.0	4.0	0.0
Merged-chr5-121843506-6	chr5	121843036	121844036	+	938.205566	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-5461.0	NM_175474	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	32.0	33.5	35.5	30.0	32.5	38.0
Merged-chr7-92565052-4	chr7	92564535	92565535	+	938.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025515, intron 1 of 8)	intron (NM_025515, intron 1 of 8)	3886.0	NM_001162918	66365.0	Mm.21173	NM_025515	ENSMUSG00000030613	Ccdc90b	2310015N07Rik|C86558	coiled-coil domain containing 90B	protein-coding	2.0	1.0	1.0	12.5	4.5	6.0
Merged-chr17-47739535-2	chr17	47739035	47740035	+	938.2000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	1604.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	5.0	8.0	4.5	0.0	10.0	9.5
Merged-chr11-76495459-4	chr11	76494917	76495917	+	938.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346670)	promoter-TSS (NM_001346670)	-922.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	13.5	58.0	51.5	15.0	80.5	28.0
Merged-chr19-34633649-4	chr19	34633150	34634150	+	938.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053217, intron 1 of 2)	intron (NM_053217, intron 1 of 2)	-3839.0	NM_001362130	112419.0	Mm.440727	NM_053217	ENSMUSG00000067297	Ifit1bl2	2010002M12Rik|AW412491|Ifit1b	interferon induced protein with tetratricopeptide repeats 1B like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118894034-4	chr10	118893550	118894550	+	938.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25147.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75610696-3	chr7	75610214	75611214	+	938.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029332, exon 7 of 37)	exon (NM_029332, exon 7 of 37)	155180.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	5.5	3.0	3.5	27.5	13.5	17.5
Merged-chr2-26534804-4	chr2	26534295	26535295	+	938.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30868.0	NR_132655	102639736.0		NR_132655		Gm35978	-	predicted gene, 35978	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167931601-3	chr2	167931088	167932088	+	938.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011201)	promoter-TSS (NM_011201)	-739.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40999087-4	chr19	40998566	40999566	+	938.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4531.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96247401-2	chr3	96246901	96247901	+	938.1666869999999	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178216).2	TTS (NM_178216).2	701.0	NM_054045	97114.0	Mm.358797	NM_054045	ENSMUSG00000081058	Hist2h3c2	H3-614|H3.2-614|Hist2h3c2-ps|Hist2h3ca1|M32461	histone cluster 2, H3c2	protein-coding	4.0	3.5	6.0	4.0	3.5	5.5
Merged-chr14-104039086-3	chr14	104038557	104039557	+	938.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11915.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120601503-2	chr5	120601003	120602003	+	938.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029408, intron 2 of 4)	B3A|SINE|B2	11086.0	NM_029096	100764.0	Mm.9654	NM_029096	ENSMUSG00000029600	Rita1	1110008J03Rik|AI853657|C86297|Rita	RBPJ interacting and tubulin associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33944920-2	chr16	33944420	33945420	+	938.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 12 of 14)	intron (NM_001145884, intron 12 of 14)	22118.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-77436832-2	chr8	77436332	77437332	+	938.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 3 of 22)	intron (NM_030113, intron 3 of 22)	-80224.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122007899-4	chr10	122007389	122008389	+	938.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081037, intron 1 of 21)	intron (NM_001081037, intron 1 of 21)	39426.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	3.0	0.0	2.5	3.0	0.0	2.5
Merged-chr2-163710993-4	chr2	163710485	163711485	+	938.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 3 of 4)	intron (NM_001039390, intron 3 of 4)	16948.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-119239286-8	chr10	119238812	119239812	+	938.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027994, intron 1 of 14)	CpG	743.0	NM_027994	71902.0	Mm.203965	NM_027994	ENSMUSG00000020114	Cand1	2310038O07Rik|6330512O03Rik|AI195005|AI846556|D10Ertd516e|Tp120a|mKIAA0829	cullin associated and neddylation disassociated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51338413-6	chr3	51337918	51338918	+	938.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 1 of 9)	L1MB8|LINE|L1	2226.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98953347-4	chr15	98952884	98953884	+	938.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011653, intron 1 of 3)	CpG	117.0	NM_011653	22142.0	Mm.405359	NM_011653	ENSMUSG00000072235	Tuba1a	Tuba-1|Tuba1	tubulin, alpha 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-144312333-4	chr1	144311843	144312843	+	938.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63239.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95293253-4	chr11	95292749	95293749	+	938.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195003, intron 5 of 14)	intron (NM_001195003, intron 5 of 14)	16997.0	NM_001195004	217127.0	Mm.90213	NM_177619	ENSMUSG00000038909	Kat7	Hbo1|Hboa|Myst2	K(lysine) acetyltransferase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21628440-3	chr16	21627953	21628953	+	938.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 45 of 46)	intron (NM_001081366, intron 45 of 46)	66212.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-68145817-3	chr18	68145349	68146349	+	938.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-82097.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31412051-3	chr3	31411549	31412549	+	938.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-101730.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45102826-3	chr9	45102311	45103311	+	938.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005421, intron 8 of 10)	intron (NM_001005421, intron 8 of 10)	-15065.0	NM_001014761	72821.0	Mm.229373	NM_001014761	ENSMUSG00000070304	Scn2b	2810451E09Rik|AI840361|Gm183	sodium channel, voltage-gated, type II, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97797747-3	chr6	97797247	97798247	+	938.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9311.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-74905072-4	chr9	74904548	74905548	+	938.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43127.0	NM_008262	15379.0	Mm.303355	NM_008262	ENSMUSG00000043013	Onecut1	D9Ertd423e|HNF-6|Hfh12|Hnf6|Hnf6b|OC-1|Oc1	one cut domain, family member 1	protein-coding	0.0	2.0	3.5	8.0	7.5	1.5
Merged-chr8-71698694-2	chr8	71698174	71699174	+	938.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028189, intron 1 of 2)	intron (NM_028189, intron 1 of 2)	3126.0	NM_028189	72297.0	Mm.290837	NM_028189	ENSMUSG00000031803	B3gnt3	2210008L19Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding	1.0	9.5	5.5	0.5	11.5	7.0
Merged-chr3-152895144-4	chr3	152894631	152895631	+	938.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	87076.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	1.0	4.0	4.5	0.5	6.0	8.5
Merged-chr17-45619120-4	chr17	45618611	45619611	+	938.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17009.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32989616-3	chr19	32989131	32990131	+	938.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-167481.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	7.0	19.0	15.5	7.0	20.0	17.0
Merged-chr7-44866483-4	chr7	44865959	44866959	+	938.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133949, intron 5 of 11)	intron (NM_133949, intron 5 of 11)	3329.0	NM_133949	84113.0	Mm.42855	NM_133949	ENSMUSG00000038502	Ptov1	1110030G05Rik|AU041779|Gcap3	prostate tumor over expressed gene 1	protein-coding	6.0	0.5	3.5	0.0	1.0	3.5
Merged-chr1-144300843-4	chr1	144300334	144301334	+	938.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-51730.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24142960-4	chr10	24142476	24143476	+	938.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6313.0	NM_001358563	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36612713-4	chr1	36612198	36613198	+	938.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201365, intron 6 of 9)	intron (NM_201365, intron 6 of 9)	-19366.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-17360382-4	chr18	17359895	17360895	+	938.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124913.0	NR_033607	664619.0	Mm.250005	NR_033607		4921533I20Rik	-	PRP18 pre-mRNA processing factor 18 homolog pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50455947-4	chr6	50455484	50456484	+	938.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001347213, exon 1 of 24)	5' UTR (NM_001347213, exon 1 of 24)	186.0	NM_001163645	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-52397710-4	chr11	52397326	52398326	+	938.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153117, intron 1 of 2)	B3A|SINE|B2	1398.0	NM_153117	213673.0	Mm.291979	NM_153117	ENSMUSG00000036275	9530068E07Rik	C85061|Kct2	RIKEN cDNA 9530068E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-60854384-4	chr15	60853886	60854886	+	938.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29306.0	NM_001162926	399603.0	Mm.411968	NM_207269	ENSMUSG00000072568	Fam84b	BF642811|D330050I23Rik	family with sequence similarity 84, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10488055-3	chr16	10487536	10488536	+	938.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007575)	promoter-TSS (NM_007575)	-142.0	NM_007575	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119952511-3	chr11	119951937	119952937	+	938.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037754, intron 1 of 13)	(TTTTG)n|Simple_repeat|Simple_repeat	9345.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121841045-4	chr3	121840512	121841512	+	938.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-25710.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5691982-4	chr2	5691508	5692508	+	938.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	-15962.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	2.0	3.5	1.0	2.5	20.5	3.0
Merged-chr17-73936780-4	chr17	73936287	73937287	+	938.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 4 of 35)	intron (NM_011723, intron 4 of 35)	13409.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-55564928-4	chr15	55564513	55565513	+	938.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168250, intron 5 of 16)	intron (NM_001168250, intron 5 of 16)	7605.0	NM_001168250	105837.0	Mm.390829	NM_134092	ENSMUSG00000022369	Mtbp	AI429604|MDM2BP	Mdm2, transformed 3T3 cell double minute p53 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101959993-4	chr11	101959504	101960504	+	938.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045806, exon 4 of 4)	non-coding (NR_045806, exon 4 of 4)	7011.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62539040-7	chr11	62538494	62539494	+	938.0476070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028448, exon 1 of 5)	exon (NM_028448, exon 1 of 5)	267.0	NM_028448	73139.0	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-16986783-5	chr11	16986355	16987355	+	938.042847	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 6 of 9)	intron (NM_019549, intron 6 of 9)	21863.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54285158-4	chr6	54284663	54285663	+	938.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 7 of 12)	intron (NM_001163640, intron 7 of 12)	12341.0	NM_023543	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	35.0	70.5	58.5	43.5	78.0	58.5
Merged-chr12-8901259-4	chr12	8900724	8901724	+	938.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20083.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89364574-3	chr6	89364072	89365072	+	938.0277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1959.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-66471341-8	chr18	66470809	66471809	+	938.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	12705.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-63914518-4	chr11	63914018	63915018	+	938.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018805, intron 1 of 1)	intron (NM_018805, intron 1 of 1)	7766.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	13.0	16.0	15.0	2.0	4.5	1.5
Merged-chr2-145998238-3	chr2	145997725	145998725	+	938.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63441.0	NM_175280	78774.0	Mm.136347	NM_175280	ENSMUSG00000037143	Cfap61	4930529M08Rik|BB178539|BC024760	cilia and flagella associated protein 61	protein-coding	12.0	3.0	2.5	4.5	4.5	2.5
Merged-chr2-173743751-2	chr2	173743251	173744251	+	938.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019806, intron 1 of 5)	B3|SINE|B2	6180.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	1.0	6.0	0.0	1.0	6.0	0.0
Merged-chr13-113920158-3	chr13	113919650	113920650	+	938.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	125642.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109491756-2	chr3	109491256	109492256	+	938.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	-82251.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.0	1.0	0.0	3.5	4.0	0.0
Merged-chr2-27351351-2	chr2	27350851	27351851	+	938.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 1 of 29)	RMER19B|LTR|ERVK	76257.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-66235340-4	chr17	66234845	66235845	+	938.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111825.0	NM_001348292	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32966223-3	chr2	32965720	32966720	+	938.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	2919.0	NR_002898	104367.0	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	15.5	20.5	20.5	4.0	50.0	22.0
Merged-chr10-51493318-2	chr10	51492818	51493818	+	938.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291894, intron 5 of 8)	intron (NM_001291894, intron 5 of 8)	2420.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6234783-2	chr19	6234283	6235283	+	938.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_198168, exon 2 of 14)	exon (NM_198168, exon 2 of 14)	1057.0	NM_198168	225849.0	Mm.118076	NM_198168	ENSMUSG00000024777	Ppp2r5b	B'beta|BC026670	protein phosphatase 2, regulatory subunit B', beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13552565-2	chr10	13552065	13553065	+	938.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025748)	promoter-TSS (NM_025748)	-342.0	NM_025748	66757.0	Mm.331841	NM_025748	ENSMUSG00000019808	Adat2	4933426M09Rik|Deadc1	adenosine deaminase, tRNA-specific 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-83953909-4	chr12	83953407	83954407	+	938.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023633)	TTS (NM_023633)	3299.0	NM_023633	71952.0	Mm.251483	NM_023633	ENSMUSG00000046791	Riox1	2410016O06Rik|MAPJD|NO66	ribosomal oxygenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101696574-2	chr13	101696074	101697074	+	938.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 7 of 15)	intron (NM_001077495, intron 7 of 15)	-3944.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104280596-2	chr9	104280096	104281096	+	938.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17666.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59879392-4	chr13	59878905	59879905	+	938.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56258.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	28.0	74.5	21.5	12.5	47.5	22.5
Merged-chr7-44309412-2	chr7	44308912	44309912	+	938.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034115)	promoter-TSS (NM_001034115)	-852.0	NM_001034115	243961.0	Mm.360368	NM_001034115	ENSMUSG00000038738	Shank1	-	SH3 and multiple ankyrin repeat domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110412194-2	chr7	110411695	110412695	+	938.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 16 of 40)	intron (NM_177324, intron 16 of 40)	190492.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180710948-3	chr2	180710528	180711528	+	938.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289651, intron 1 of 4)	intron (NM_001289651, intron 1 of 4)	700.0	NM_001289651	76425.0	Mm.41464	NM_029607	ENSMUSG00000027573	Gid8	2310003C23Rik|4833420G11Rik|AI451474|Twa1	GID complex subunit 8	protein-coding	3.5	8.0	7.5	3.5	8.0	5.5
Merged-chr11-104469086-3	chr11	104468589	104469589	+	938.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359634)	promoter-TSS (NM_001359634)	-228.0	NM_001359634	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26360446-2	chr2	26359946	26360946	+	938.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037747)	promoter-TSS (NM_001037747)	-899.0	NM_001037747	332579.0	Mm.330064	NM_001037747	ENSMUSG00000026928	Card9	Gm782	caspase recruitment domain family, member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-99325520-2	chr13	99325015	99326015	+	938.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026873, intron 8 of 9)	intron (NM_026873, intron 8 of 9)	19163.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	0.5	10.0	5.5	0.0	6.5	2.5
Merged-chr3-79539916-4	chr3	79539451	79540451	+	938.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	27728.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-3246443-1	chr16	3245943	3246943	+	938.0	f1_balb.idr	Intergenic	Intergenic	-345955.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121454270-3	chr10	121453780	121454780	+	938.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	21970.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0.0	10.5	0.5	3.0	22.0	2.5
Merged-chr1-176797454-3	chr1	176796955	176797955	+	938.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099637, intron 1 of 19)	intron (NM_001099637, intron 1 of 19)	9669.0	NM_001099637	545389.0	Mm.269991	NM_001024722	ENSMUSG00000057335	Cep170	4933426L22Rik|A330004A13Rik|AI195353	centrosomal protein 170	protein-coding	6.0	0.0	0.0	0.5	2.5	1.0
Merged-chr16-11908883-2	chr16	11908383	11909383	+	938.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033509, intron 2 of 2)	intron (NR_033509, intron 2 of 2)	540.0	NM_146067	223978.0	Mm.86360	NM_146067	ENSMUSG00000065979	Cpped1	C530044N13Rik	calcineurin-like phosphoesterase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152131060-3	chr4	152130552	152131552	+	938.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_207691, exon 4 of 10)	exon (NM_207691, exon 4 of 10)	-2127.0	NM_019585	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80849934-4	chr7	80849412	80850412	+	938.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12196.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	1.5	4.0	0.0	2.0	2.0	0.0
Merged-chr16-92573354-1	chr16	92572854	92573854	+	938.0	f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	75207.0	NM_172469	209195.0	Mm.44747	NM_172469	ENSMUSG00000022949	Clic6	5730466J16Rik|AL022908|AW045520|CLIC1L	chloride intracellular channel 6	protein-coding	10.0	16.0	4.0	0.0	8.0	5.5
Merged-chr8-120322701-2	chr8	120322201	120323201	+	938.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-94471.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139473335-2	chr7	139472835	139473835	+	938.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183144, intron 2 of 15)	intron (NM_183144, intron 2 of 15)	72841.0	NM_001355162	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0.0	2.0	1.5	0.0	3.5	0.0
Merged-chr11-80157883-2	chr11	80157383	80158383	+	938.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 3 of 10)	intron (NM_172133, intron 3 of 10)	3721.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118663623-2	chr9	118663056	118664056	+	938.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 7 of 27)	intron (NM_133721, intron 7 of 27)	-48136.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	94.0	267.5	214.5	60.0	198.0	142.0
Merged-chr4-126035563-4	chr4	126035046	126036046	+	937.9916380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252651, intron 7 of 14)	intron (NM_001252651, intron 7 of 14)	10887.0	NM_001252651	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	6.5	33.5	10.5	2.0	20.5	5.5
Merged-chr18-34373343-8	chr18	34372963	34373963	+	937.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007874)	promoter-TSS (NM_007874)	-48.0	NM_007874	13476.0	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59725746-4	chr9	59725242	59726242	+	937.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17978.0	NM_001033498	546134.0	Mm.297580	NM_001033498	ENSMUSG00000074259	Gramd2	BC064463|Gramd2a	GRAM domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144714783-4	chr2	144714269	144715269	+	937.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025314, intron 4 of 5)	RMER13B|LTR|ERVK	-108897.0	NM_025490	66328.0	Mm.45377	NM_025490	ENSMUSG00000027431	Scp2d1	1700010M22Rik	SCP2 sterol-binding domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-41245096-4	chr3	41244580	41245580	+	937.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-162034.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	17.0	5.0	4.0	21.5	24.0	20.5
Merged-chr10-62311596-4	chr10	62311113	62312113	+	937.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010438, intron 5 of 21)	intron (NM_010438, intron 5 of 21)	28808.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-64657819-3	chr14	64657314	64658314	+	937.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081177, intron 1 of 39)	intron (NM_001081177, intron 1 of 39)	5283.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	5.5	10.0	9.5	4.5	11.5	7.0
Merged-chr2-155696392-4	chr2	155695863	155696863	+	937.9285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3979.0	NM_001163452	56407.0	Mm.234944	NM_019828	ENSMUSG00000038324	Trpc4ap	4833429F06Rik|D2Ertd113e|Trrp4ap|mFLJ00177|truss	transient receptor potential cation channel, subfamily C, member 4 associated protein	protein-coding	51.5	65.5	71.5	26.5	64.0	18.5
Merged-chr8-37011867-4	chr8	37011376	37012376	+	937.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126063, intron 1 of 2)	intron (NR_126063, intron 1 of 2)	12362.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	23.5	46.5	29.5	30.0	42.5	36.0
Merged-chr1-55667147-4	chr1	55666636	55667636	+	937.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	261190.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	5.0	17.5	10.0	6.5	14.5	8.5
Merged-chr18-61314136-2	chr18	61313636	61314636	+	937.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133249, intron 3 of 11)	intron (NM_133249, intron 3 of 11)	83764.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	5.5	5.0	1.0	9.0	5.0	1.5
Merged-chr10-96416837-4	chr10	96416329	96417329	+	937.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	190622.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-129422005-4	chr3	129421465	129422465	+	937.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11708.0	NR_033594	435755.0	Mm.430561	NR_033594	ENSMUSG00000105712	Pou5f1-rs4	EG435755|Gm5712|Oct4P1|Otf3-rs4|Otf3d	POU domain, class 5, transcription factor 1, related sequence 4	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-7858573-3	chr14	7858066	7859066	+	937.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081427, intron 1 of 45)	intron (NM_001081427, intron 1 of 45)	40609.0	NM_134080	286940.0	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65741139-3	chr9	65740637	65741637	+	937.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172536, intron 2 of 9)	intron (NM_172536, intron 2 of 9)	64589.0	NM_001301307	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	0.0	11.5	4.5	26.0	64.0	38.0
Merged-chr12-40447363-3	chr12	40446879	40447879	+	937.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	1326.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59459493-4	chr4	59459011	59460011	+	937.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Zaphod|DNA|hAT-Tip100	-20878.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	19.5	3.5	2.5	4.0	0.0	0.5
Merged-chr18-57675282-4	chr18	57674770	57675770	+	937.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029290, intron 6 of 6)	intron (NM_029290, intron 6 of 6)	-36685.0	NR_045360	70157.0	Mm.490532	NR_045360		2210409D07Rik	-	RIKEN cDNA 2210409D07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53735783-4	chr11	53735290	53736290	+	937.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14996.0	NM_010558	16191.0	Mm.4461	NM_010558	ENSMUSG00000036117	Il5	Il-5	interleukin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97556250-2	chr11	97555688	97556688	+	937.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 1 of 19)	intron (NM_018873, intron 1 of 19)	18938.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	4.5	19.5	17.5	7.0	19.5	9.0
Merged-chr4-117134755-2	chr4	117134255	117135255	+	937.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013807)	promoter-TSS (NM_013807)	-792.0	NM_001313916	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	4.0	12.5	9.0	3.0	24.0	23.5
Merged-chr8-126755484-2	chr8	126755002	126756002	+	937.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93518.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	20.0	36.0	11.0	16.0	21.0	17.0
Merged-chr5-72793812-3	chr5	72793327	72794327	+	937.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	-41050.0	NM_001122754	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-22817530-3	chr14	22817048	22818048	+	937.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-274750.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-22010108-4	chr3	22009611	22010611	+	937.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66541.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6909813-4	chr15	6909365	6910365	+	937.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35552.0	NM_001310469	18414.0	Mm.10760	NM_011019	ENSMUSG00000022146	Osmr	OSMRB	oncostatin M receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-74090481-3	chr13	74089990	74090990	+	937.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28205.0	NM_028959	74470.0	Mm.73234	NM_028959	ENSMUSG00000021572	Cep72	2610029E11Rik|4933440J22Rik	centrosomal protein 72	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165388217-4	chr2	165387662	165388662	+	937.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178411)	promoter-TSS (NM_178411)	97.0	NM_178411	228876.0	Mm.26316	NM_178411	ENSMUSG00000017667	Zfp334	D2Ertd535e	zinc finger protein 334	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122047347-3	chr10	122046749	122047749	+	937.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001242411)	promoter-TSS (NM_001242411)	66.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157011169-3	chr2	157010647	157011647	+	937.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164663, exon 15 of 15)	3' UTR (NM_001164663, exon 15 of 15)	-4072.0	NM_025853	66934.0	Mm.25410	NM_025853	ENSMUSG00000027635	Dsn1	1700022L09Rik|AW552447	DSN1 homolog, MIS12 kinetochore complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38676882-4	chr6	38676378	38677378	+	937.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001101507, exon 3 of 5)	exon (NM_001101507, exon 3 of 5)	13809.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52988063-4	chr2	52987548	52988548	+	937.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	130180.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64197852-4	chr1	64197340	64198340	+	937.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76451.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-57417368-4	chr14	57416860	57417860	+	937.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B1|LTR|ERVL	-6711.0	NM_009376	21821.0	Mm.4653	NM_009376	ENSMUSG00000040040	Ift88	AW552028|Tg737|Tg737Rpw|TgN737Rpw|Ttc10|flexo|fxo|orpk|polaris	intraflagellar transport 88	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65984257-4	chr5	65983758	65984758	+	937.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17134.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33755520-4	chr16	33755018	33756018	+	937.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 12 of 14)	intron (NM_175256, intron 12 of 14)	-38519.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58423909-4	chr15	58423401	58424401	+	937.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145959, intron 4 of 23)	intron (NM_145959, intron 4 of 23)	8433.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	1.5	3.0	7.5	10.0	9.5	7.5
Merged-chr14-77511628-3	chr14	77511122	77512122	+	937.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253759, intron 7 of 19)	Lx5c|LINE|L1	-4754.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	8.0	16.5	9.5	3.5	1.0	3.0
Merged-chr12-85228670-3	chr12	85228102	85229102	+	937.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9121.0	NM_145445	217715.0	Mm.29041	NM_145445	ENSMUSG00000004788	Eif2b2	EIF-2Bbeta|EIF2B	eukaryotic translation initiation factor 2B, subunit 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101325526-3	chr4	101325018	101326018	+	937.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21509.0	NR_029537	387143.0		NR_029537	ENSMUSG00000065451	Mir101a	Mirn101|Mirn101a|miR-101|mir-101a	microRNA 101a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97400064-4	chr7	97399559	97400559	+	937.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024220)	promoter-TSS (NM_024220)	56.0	NM_024220	68197.0	Mm.334031	NM_024220	ENSMUSG00000030647	Ndufc2	1810004I06Rik|2010300P09Rik|G1|R75094	NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2	protein-coding	1.0	4.0	7.5	12.0	29.5	10.5
Merged-chr15-62079612-4	chr15	62079134	62080134	+	937.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	40377.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98938173-2	chr15	98937673	98938673	+	937.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3783.0	NM_011654	22143.0	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3133072-4	chr11	3132556	3133556	+	937.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 30 of 32)	intron (NM_030207, intron 30 of 32)	9035.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87499080-2	chr6	87498580	87499580	+	937.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	-2753.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	35.5	65.5	44.5	43.5	61.0	32.0
Merged-chr4-33251914-3	chr4	33251414	33252414	+	937.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3127.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128427316-2	chr2	128426805	128427805	+	937.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	2046.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	24.0	19.5	13.0	0.0	11.0	2.0
Merged-chr12-83859128-2	chr12	83858628	83859628	+	937.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_073564, intron 2 of 12)	ORR1A2-int|LTR|ERVL-MaLR	-16770.0	NM_010949	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130733666-4	chr2	130733163	130734163	+	937.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029432, intron 27 of 36)	intron (NM_029432, intron 27 of 36)	-36144.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	56.5	120.5	70.5	35.5	147.0	54.0
Merged-chr16-89872423-6	chr16	89871911	89872911	+	937.7222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 6 of 27)	intron (NM_009384, intron 6 of 27)	-54059.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170159071-6	chr2	170158483	170159483	+	937.7222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR2b|LTR|Gypsy	-16308.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-97573769-4	chr13	97573263	97574263	+	937.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046157, intron 2 of 2)	ORR1G|LTR|ERVL-MaLR	13763.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-64941696-4	chr14	64941205	64942205	+	937.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 1 of 9)	intron (NM_177338, intron 1 of 9)	8152.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	7.0	7.5	3.0	7.0	7.5	3.0
Merged-chr9-41102321-4	chr9	41101843	41102843	+	937.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	B1F|SINE|Alu	-22837.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	42.5	150.0	89.5	43.0	63.0	36.5
Merged-chr5-105138336-4	chr5	105137845	105138845	+	937.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008620, intron 1 of 10)	intron (NM_008620, intron 1 of 10)	1241.0	NM_001256005	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	7.5	24.0	15.0	7.0	17.0	13.5
Merged-chr6-113622324-4	chr6	113621831	113622831	+	937.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1690.0	NM_009507	22346.0	Mm.29407	NM_009507	ENSMUSG00000033933	Vhl	Vhlh	von Hippel-Lindau tumor suppressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61689560-4	chr14	61689054	61690054	+	937.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7181.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117344116-4	chr2	117343621	117344621	+	937.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1244.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47538988-4	chr19	47538492	47539492	+	937.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER67A|LTR|ERV1	-1873.0	NM_175360	108689.0	Mm.218048	NM_175360	ENSMUSG00000042694	Stn1	0610009H20Rik|2310057J23Rik|AAF-44|AAF44|AI413458|Obfc1|RPA-32	STN1, CST complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32665469-4	chr19	32664946	32665946	+	937.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011864, exon 13 of 13)	exon (NM_011864, exon 13 of 13)	45441.0	NM_011864	23972.0	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166717343-6	chr2	166716779	166717779	+	937.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-3447.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50490303-4	chr17	50489797	50490797	+	937.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19250.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	4.5	9.0	10.0	2.0	14.0	6.0
Merged-chr10-62507198-3	chr10	62506682	62507682	+	937.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 2 of 3)	ID_B1|SINE|B4	575.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32255153-3	chr19	32254625	32255625	+	937.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 3 of 9)	intron (NM_144792, intron 3 of 9)	-44112.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-47287679-4	chr4	47287180	47288180	+	937.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 22 of 39)	intron (NM_009928, intron 22 of 39)	-65542.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6453053-4	chr4	6452539	6453539	+	937.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 1 of 30)	intron (NM_010945, intron 1 of 30)	1232.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75062208-2	chr8	75061708	75062708	+	937.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136259, intron 12 of 15)	intron (NM_001136259, intron 12 of 15)	28522.0	NM_011622	21968.0	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117777151-2	chr11	117776651	117777651	+	937.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145439, intron 5 of 19)	MTE2a|LTR|ERVL-MaLR	2497.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10969640-4	chr16	10969121	10970121	+	937.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	23500.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66893390-4	chr15	66892896	66893896	+	937.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018865, intron 1 of 4)	intron (NM_018865, intron 1 of 4)	2003.0	NM_018865	22402.0	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	0.0	1.5	0.5	4.0	3.0	0.0
Merged-chr5-64234357-4	chr5	64233850	64234850	+	937.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	L2a|LINE|L2	3993.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	5.0	13.0	10.0	0.5	4.0	5.0
Merged-chr9-15126184-3	chr9	15125682	15126682	+	937.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-14074.0	NM_001164797	244698.0	Mm.325134	NM_001164797	ENSMUSG00000031936	Hephl1	Gm509|Zp|zyklopen	hephaestin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83397493-3	chr17	83396990	83397990	+	937.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357886, intron 1 of 21)	intron (NM_001357886, intron 1 of 21)	46559.0	NM_001357886	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-36685471-4	chr8	36684899	36685899	+	937.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 5 of 17)	intron (NM_001194940, intron 5 of 17)	47655.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	8.0	10.5	25.5	14.5	31.5	15.5
Merged-chr7-25187835-4	chr7	25187354	25188354	+	937.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29871.0	NR_106015	102466794.0		NR_106015	ENSMUSG00000098325	Mir7048	Gm27274|mmu-mir-7048	microRNA 7048	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-8671003-4	chr16	8670505	8671505	+	937.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025821, intron 1 of 3)	intron (NM_025821, intron 1 of 3)	1148.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19047581-4	chr10	19047094	19048094	+	937.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32184.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	8.0	0.0	0.5	0.0	7.0	0.0
Merged-chr6-86447213-6	chr6	86446723	86447723	+	937.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243741, intron 3 of 9)	intron (NM_001243741, intron 3 of 9)	8577.0	NM_001243741	232196.0	Mm.404040	NM_146170	ENSMUSG00000046679	C87436	-	expressed sequence C87436	protein-coding	5.5	6.5	8.5	1.5	4.5	1.5
Merged-chr3-8984807-3	chr3	8984298	8985298	+	937.5277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	MER5A|DNA|hAT-Charlie	19406.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	23.5	44.0	27.0	13.5	39.5	31.0
Merged-chr3-90253419-2	chr3	90252919	90253919	+	937.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028881)	promoter-TSS (NM_028881)	-439.0	NR_151631	74343.0	Mm.35627	NM_028881	ENSMUSG00000027936	Crtc2	4632407F12Rik|Torc2	CREB regulated transcription coactivator 2	protein-coding	2.5	23.5	10.0	4.5	17.0	13.0
Merged-chr5-30105078-2	chr5	30104578	30105578	+	937.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167879)	promoter-TSS (NM_001167879)	-118.0	NM_001167879	242915.0	Mm.332287	NM_001167879	ENSMUSG00000044576	Garem2	Fam59b|Gareml|Gm444	GRB2 associated regulator of MAPK1 subtype 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118240140-2	chr11	118239640	118240640	+	937.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	8452.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83654542-2	chr7	83654049	83655049	+	937.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 13 of 18)	L2c|LINE|L2	946.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	6.5	48.0	19.5	12.0	18.5	20.5
Merged-chr16-3744868-4	chr16	3744359	3745359	+	937.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148924, intron 1 of 5)	intron (NM_148924, intron 1 of 5)	760.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125460029-2	chr8	125459503	125460503	+	937.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 10 of 21)	intron (NM_001357372, intron 10 of 21)	32830.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	24.5	44.0	46.5	9.5	9.5	6.0
Merged-chr10-77271067-4	chr10	77270571	77271571	+	937.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11771.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139615442-2	chr4	139614931	139615931	+	937.5	f0_c57.idr|f1_c57bl6.idr	intron (NM_001205173, intron 8 of 8)	MTD|LTR|ERVL-MaLR	-7463.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	18.0	83.5	45.5	1.0	31.0	6.0
Merged-chr5-92656389-4	chr5	92655912	92656912	+	937.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360020, intron 9 of 9)	intron (NM_001360020, intron 9 of 9)	18715.0	NM_001360018	320696.0	Mm.209991	NM_177230	ENSMUSG00000050050	Ccdc158	4932413O14Rik	coiled-coil domain containing 158	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121116106-4	chr8	121115625	121116625	+	937.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013519)	promoter-TSS (NM_013519)	-46.0	NM_013519	14234.0	Mm.14092	NM_013519	ENSMUSG00000046714	Foxc2	Fkh14|Hfhbf3|MFH-1|Mfh1	forkhead box C2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67005765-2	chr10	67005265	67006265	+	937.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_110511, intron 1 of 6)	B2_Mm2|SINE|B2	690.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	3.5	0.0	0.0	3.5	0.0	1.0
Merged-chr16-97444059-4	chr16	97443557	97444557	+	937.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18848.0	NM_010846	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-17014045-2	chr11	17013545	17014545	+	937.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	-5327.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119453409-2	chr13	119452909	119453909	+	937.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145457, intron 9 of 10)	B1_Mus1|SINE|Alu	-9350.0	NR_153825	67392.0	Mm.390641	NM_026127	ENSMUSG00000062822	4833420G17Rik	2210017J06Rik|5730533D17Rik|AW107518|C85193	RIKEN cDNA 4833420G17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51408716-2	chr13	51408216	51409216	+	937.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010101)	promoter-TSS (NM_010101)	98.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4974773-3	chr11	4974277	4975277	+	937.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243043, intron 1 of 22)	intron (NM_001243043, intron 1 of 22)	-12047.0	NM_001355659	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8842984-3	chr10	8842488	8843488	+	937.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	43082.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	7.5	13.5	14.0	9.0	19.5	12.5
Merged-chr12-32896736-2	chr12	32896236	32897236	+	937.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57053.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-36554796-3	chr19	36554313	36555313	+	937.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172637, exon 1 of 21)	exon (NM_172637, exon 1 of 21)	174.0	NM_172637	226098.0	Mm.61107	NM_172637	ENSMUSG00000041180	Hectd2	4921524L07|A630025O09Rik|AW212605	HECT domain E3 ubiquitin protein ligase 2	protein-coding	3.5	7.0	15.5	1.5	3.0	2.5
Merged-chr2-131244732-2	chr2	131244232	131245232	+	937.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001206382, intron 6 of 7)	intron (NM_001206382, intron 6 of 7)	10669.0	NM_144888	228607.0	Mm.287226	NM_144888	ENSMUSG00000037523	Mavs	D430028G21Rik|IPS-1|Visa|cardif	mitochondrial antiviral signaling protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123027182-2	chr5	123026682	123027682	+	937.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175423, intron 1 of 1)	ID_B1|SINE|B4	12108.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139365393-3	chr5	139364877	139365877	+	937.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	4368.0	NR_029768	723898.0		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7781468-2	chr10	7780968	7781968	+	937.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346750)	promoter-TSS (NM_001346750)	-551.0	NM_001346750	215751.0	Mm.471825	NM_145418	ENSMUSG00000040006	Ginm1	AA589616	glycoprotein integral membrane 1	protein-coding	18.0	8.0	24.0	8.0	31.5	18.5
Merged-chr10-7726690-2	chr10	7726190	7727190	+	937.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011835, intron 1 of 10)	intron (NM_011835, intron 1 of 10)	690.0	NM_011835	23924.0	Mm.28127	NM_011835	ENSMUSG00000019794	Katna1	-	katanin p60 (ATPase-containing) subunit A1	protein-coding	5.5	20.0	17.5	4.0	11.0	8.0
Merged-chr6-39001310-2	chr6	39000810	39001810	+	937.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011539, exon 5 of 13)	exon (NM_011539, exon 5 of 13)	66276.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3333932-2	chr2	3333432	3334432	+	937.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1304.0	NM_001013376	227522.0	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-38296830-3	chr13	38296332	38297332	+	937.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48884.0	NM_007556	12161.0	Mm.385759	NM_007556	ENSMUSG00000039004	Bmp6	D13Wsu115e|Vgr1	bone morphogenetic protein 6	protein-coding	3.5	7.0	9.5	2.5	2.0	10.0
Merged-chr15-86172365-2	chr15	86171865	86172865	+	937.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-13363.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93754092-4	chr1	93753589	93754589	+	937.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174874)	promoter-TSS (NM_174874)	749.0	NM_025920	67026.0	Mm.272356	NM_025920	ENSMUSG00000026279	Thap4	2010320B01Rik	THAP domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98201642-2	chr11	98201142	98202142	+	937.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-1663.0	NM_001109628	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102646310-4	chr12	102645772	102646772	+	937.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 2 of 9)	intron (NM_172584, intron 2 of 9)	38748.0	NR_035457	100316812.0		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3704247-2	chr19	3703747	3704747	+	937.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-4046.0	NM_001358256	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-66649990-8	chr1	66649505	66650505	+	937.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175510, intron 47 of 64)	intron (NM_175510, intron 47 of 64)	-50826.0	NM_025683	66646.0	Mm.240912	NM_025683	ENSMUSG00000026005	Rpe	2810429B02Rik|5730518J08Rik	ribulose-5-phosphate-3-epimerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87311462-2	chr17	87310962	87311962	+	937.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 5 of 19)	intron (NM_028639, intron 5 of 19)	28576.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73612933-2	chr15	73612433	73613433	+	937.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033219, intron 1 of 7)	intron (NM_001033219, intron 1 of 7)	4391.0	NM_001357747	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-42977299-4	chr5	42976801	42977801	+	937.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-256162.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-75874732-3	chr5	75874232	75875232	+	937.4722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103696.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	8.5	0.0	3.0	5.0	15.0	4.0
Merged-chr12-55560262-4	chr12	55559850	55560850	+	937.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4855.0	NM_001277340	79459.0	Mm.392781	NM_001277340	ENSMUSG00000063129	Aldoart2	4933425L11Rik|Aldo1-ps1|Aldoa-ps1	aldolase 1 A, retrogene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116694177-4	chr6	116693679	116694679	+	937.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178768, exon 5 of 5)	3' UTR (NM_178768, exon 5 of 5)	-20343.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108407627-4	chr6	108407119	108408119	+	937.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 35 of 61)	intron (NM_010585, intron 35 of 61)	-82124.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37529779-3	chr9	37529278	37530278	+	937.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136939, intron 1 of 6)	intron (NR_136939, intron 1 of 6)	1689.0	NM_027102	69524.0	Mm.41751	NM_027102	ENSMUSG00000001946	Esam	2310008D05Rik|Esam1|W117m	endothelial cell-specific adhesion molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-16038750-3	chr9	16038255	16039255	+	937.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 3 of 24)	intron (NM_001080814, intron 3 of 24)	-164199.0	NM_145712	244701.0	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152363605-4	chr2	152363088	152364088	+	937.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033505, intron 2 of 4)	intron (NR_033505, intron 2 of 4)	12978.0	NM_001009948	228777.0	Mm.330667	NM_001009948	ENSMUSG00000059361	Nrsn2	Gm123|Neurensin-2	neurensin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78851962-4	chr15	78851478	78852478	+	937.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025622, intron 2 of 3)	intron (NM_025622, intron 2 of 3)	3551.0	NM_025622	107753.0	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	6.0	18.0	1.5	2.0	0.0	1.0
Merged-chr14-46808114-4	chr14	46807603	46808603	+	937.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_022023)	TTS (NM_022023)	14139.0	NM_022023	63985.0	Mm.87312	NM_022023	ENSMUSG00000062014	Gmfb	3110001H22Rik|3110001O16Rik|AI851627|C79176|D14Ertd630e	glia maturation factor, beta	protein-coding	24.5	10.0	1.5	5.0	13.0	3.5
Merged-chr6-108480178-4	chr6	108479675	108480675	+	937.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 46 of 61)	intron (NM_010585, intron 46 of 61)	-9568.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.5	1.0	0.0	0.0	2.0	6.0
Merged-chr1-120099657-4	chr1	120099155	120100155	+	937.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21264.0	NM_001037999	13167.0	Mm.2785	NM_007830	ENSMUSG00000026385	Dbi	ACBD1|Acbp|EP|endozepine	diazepam binding inhibitor	protein-coding	57.0	105.0	43.5	7.5	14.0	4.5
Merged-chr9-65577100-5	chr9	65576634	65577634	+	937.4266359999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 1 of 5)	intron (NM_153119, intron 1 of 5)	2953.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	93.0	289.5	128.0	104.0	264.0	158.0
Merged-chr17-34364007-4	chr17	34363554	34364554	+	937.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_079835, intron 6 of 8)	Lx8|LINE|L1	9232.0	NM_079835	547431.0	Mm.441007	NM_079835	ENSMUSG00000024340	Btnl2	BTL-II|BTLN2|Btl2|Gm315|NG9	butyrophilin-like 2	protein-coding	75.5	179.0	132.5	53.0	114.5	82.0
Merged-chr17-47761150-2	chr17	47760650	47761650	+	937.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	23219.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr7-38155990-2	chr7	38155499	38156499	+	937.416626	f0_c57.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-27218.0	NM_001085385	72244.0	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	2.0	0.0	3.0	1.5	1.0	3.0
Merged-chr7-4922797-4	chr7	4922281	4923281	+	937.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358882)	promoter-TSS (NM_001358882)	-99.0	NM_001358882	269854.0	Mm.42652	NM_201355	ENSMUSG00000035285	Nat14	BC047219	N-acetyltransferase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105148244-4	chr5	105147746	105148746	+	937.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-8660.0	NM_001359080	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	2.0	0.0	0.5	2.0	0.0	0.5
Merged-chr1-75209265-7	chr1	75208770	75209770	+	937.392883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029010, intron 2 of 16)	intron (NM_029010, intron 2 of 16)	1508.0	NM_029010	74577.0	Mm.458319	NM_029010	ENSMUSG00000026200	Glb1l	4833408P15Rik	galactosidase, beta 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24902265-5	chr10	24901588	24902588	+	937.386658	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027347, exon 19 of 29)	exon (NM_027347, exon 19 of 29)	-8576.0	NR_105870	102465545.0		NR_105870	ENSMUSG00000099181	Mir6905	Gm27879|mmu-mir-6905	microRNA 6905	ncRNA	49.5	46.5	47.5	5.0	2.0	1.0
Merged-chr3-105878072-4	chr3	105877579	105878579	+	937.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	7221.0	NM_001174169	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	28.0	18.0	22.5	25.5	14.5	16.0
Merged-chr19-9913366-2	chr19	9912866	9913866	+	937.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	-13833.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107641313-2	chr9	107640824	107641824	+	937.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5982.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	76.5	224.0	177.5	86.5	138.5	208.0
Merged-chr2-18992749-3	chr2	18992247	18993247	+	937.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	RLTR12G|LTR|ERVK	5374.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-127135501-3	chr1	127135023	127136023	+	937.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69463.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	21.0	16.0	17.0	29.0	27.0	17.0
Merged-chr16-78264758-3	chr16	78264270	78265270	+	937.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-9316.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152928802-3	chr3	152928292	152929292	+	937.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	53415.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	0.5	14.0	9.0	2.0	0.0	0.5
Merged-chr4-3954143-3	chr4	3953630	3954630	+	937.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14706.0	NR_104356	66433.0	Mm.27406	NM_181391	ENSMUSG00000042198	Chchd7	1810049H20Rik	coiled-coil-helix-coiled-coil-helix domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38620391-3	chr15	38619892	38620892	+	937.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR53_Mm|LTR|ERVK	-25458.0	NR_045757	69679.0	Mm.416890	NR_045757	ENSMUSG00000102106	2310043O21Rik	-	RIKEN cDNA 2310043O21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86099483-3	chr11	86098987	86099987	+	937.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178309, intron 16 of 19)	intron (NM_178309, intron 16 of 19)	-75137.0	NR_046030	629393.0	Mm.372867	NR_046030		Gm20759	-	predicted gene, 20759	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-60669350-4	chr1	60668850	60669850	+	937.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77038.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	19.5	55.0	33.0	26.5	71.5	33.5
Merged-chr15-94683882-4	chr15	94683384	94684384	+	937.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178789, intron 2 of 7)	intron (NM_178789, intron 2 of 7)	54699.0	NM_178789	320709.0	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134852610-8	chr4	134852094	134853094	+	937.3229369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355499, intron 1 of 11)	CpG	751.0	NM_001355501	66146.0	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61|Maco1	transmembrane protein 57	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191181524-5	chr1	191181019	191182019	+	937.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007498, intron 1 of 3)	intron (NM_007498, intron 1 of 3)	1814.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-72810840-4	chr15	72810335	72811335	+	937.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002864)	promoter-TSS (NR_002864)	-511.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38967407-4	chr6	38966922	38967922	+	937.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	ORR1D2|LTR|ERVL-MaLR	48436.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84913443-7	chr8	84912752	84913752	+	937.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_103491)	promoter-TSS (NR_103491)	-83.0	NR_103491	100503676.0	Mm.437155	NR_103491	ENSMUSG00000003812	Gm38426	-	predicted gene, 38426	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58728477-7	chr1	58727957	58728957	+	937.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 2 of 8)	intron (NM_001355056, intron 2 of 8)	-2095.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-47038206-3	chr13	47037712	47038712	+	937.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016785, intron 3 of 8)	intron (NM_016785, intron 3 of 8)	5005.0	NM_016785	22017.0	Mm.10169	NM_016785	ENSMUSG00000021376	Tpmt	AW106912	thiopurine methyltransferase	protein-coding	33.0	32.0	39.0	4.0	2.5	16.0
Merged-chr11-70790033-4	chr11	70789561	70790561	+	937.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001045526)	TTS (NM_001045526)	22500.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	10.5	8.5	13.5	24.0	18.0	16.0
Merged-chr3-105899953-4	chr3	105899447	105900447	+	937.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-4474.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	3.5	4.0	5.0	0.0	14.5	1.5
Merged-chr18-50034157-3	chr18	50033650	50034650	+	937.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360935, intron 1 of 1)	intron (NM_001360935, intron 1 of 1)	3166.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	6.0	28.5	8.5	8.5	21.0	13.0
Merged-chr1-13336042-4	chr1	13335555	13336555	+	937.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	36374.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45597174-4	chr17	45596587	45597587	+	937.256226	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199115, intron 1 of 12)	intron (NM_001199115, intron 1 of 12)	-1185.0	NM_001199114	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-77448213-2	chr14	77447714	77448714	+	937.25	f0_c57.idr|f1_c57bl6.idr	intron (NM_001253759, intron 5 of 19)	intron (NM_001253759, intron 5 of 19)	58654.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	12.0	18.5	9.0	1.5	6.0	0.0
Merged-chr3-97265184-4	chr3	97264700	97265700	+	937.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-37836.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80250939-2	chr10	80250439	80251439	+	937.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_029272, intron 1 of 7)	ID_B1|SINE|B4	1487.0	NM_029272	75406.0	Mm.28712	NM_029272	ENSMUSG00000020153	Ndufs7	1010001M04Rik	NADH dehydrogenase (ubiquinone) Fe-S protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165060093-4	chr2	165059587	165060587	+	937.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027852, intron 1 of 7)	RSINE1|SINE|B4	4451.0	NM_011611	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	1.5	17.5	5.0	0.0	5.0	0.0
Merged-chr2-122570661-4	chr2	122570175	122571175	+	937.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40602.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	78.0	94.0	63.0	113.5	180.5	168.5
Merged-chr8-71298694-4	chr8	71298203	71299203	+	937.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	L1MB5|LINE|L1	25989.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	2.5	2.5	14.5	4.0	18.0	18.0
Merged-chr1-13328586-4	chr1	13328120	13329120	+	937.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	43809.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-21676807-4	chr2	21676300	21677300	+	937.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004761, intron 5 of 10)	intron (NM_001004761, intron 5 of 10)	309233.0	NM_001004761	241263.0	Mm.166647	NM_175706	ENSMUSG00000045967	Gpr158	5330427M13Rik|mKIAA1136	G protein-coupled receptor 158	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98944593-2	chr11	98944093	98945093	+	937.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177303, intron 1 of 8)	ID_B1|SINE|B4	4882.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100705940-4	chr5	100705442	100706442	+	937.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152803, intron 3 of 11)	Tigger1|DNA|TcMar-Tigger	13774.0	NM_152803	15442.0	Mm.265786	NM_152803	ENSMUSG00000035273	Hpse	HSE1|Hpa|Hpr1	heparanase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-177711561-4	chr1	177711072	177712072	+	937.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-18242.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3787712-3	chr5	3787220	3788220	+	937.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003909, intron 1 of 19)	MER68-int|LTR|ERVL	-14933.0	NM_001289529	70797.0	Mm.130148	NM_001003909	ENSMUSG00000040351	Ankib1	2310061P20Rik|4631416I11Rik|AW494740|C80642|mKIAA1386	ankyrin repeat and IBR domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-17733859-3	chr18	17733367	17734367	+	937.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-152877.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	2.5	0.0	2.5	7.0	0.0	1.5
Merged-chr18-11866277-3	chr18	11865745	11866745	+	937.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022021, intron 1 of 8)	ORR1A3-int|LTR|ERVL-MaLR	-25807.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117348458-4	chr5	117347938	117348938	+	937.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033311, intron 7 of 9)	intron (NM_001033311, intron 7 of 9)	-8867.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr9-3027722-4	chr9	3027205	3028205	+	937.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	11038.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121256615-3	chr10	121256115	121257115	+	937.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53966.0	NR_152796	74647.0	Mm.370609	NR_152796	ENSMUSG00000112846	4930432O09Rik	-	RIKEN cDNA 4930432O09 gene	ncRNA	0.0	7.0	0.0	8.5	34.5	11.0
Merged-chr18-54961478-4	chr18	54960962	54961962	+	937.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	28718.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108203201-4	chr9	108202705	108203705	+	937.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12822.0	NM_007567	12217.0	Mm.20425	NM_007567	ENSMUSG00000032589	Bsn	-	bassoon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122289810-4	chr7	122289272	122290272	+	937.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 1 of 16)	CpG	647.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141301224-4	chr4	141300718	141301718	+	937.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010139)	promoter-TSS (NM_010139)	-3.0	NM_010139	13836.0	Mm.2581	NM_010139	ENSMUSG00000006445	Epha2	AW545284|Eck|Myk2|Sek-2|Sek2	Eph receptor A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-33281928-2	chr4	33281428	33282428	+	937.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR33|LTR|ERVK	-28383.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107830390-2	chr13	107829889	107830889	+	937.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	59675.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	9.0	15.0	13.0	5.5	18.5	17.5
Merged-chr3-41580072-4	chr3	41579574	41580574	+	937.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130186, intron 1 of 10)	intron (NM_001130186, intron 1 of 10)	15194.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	0.0	12.0	8.0	4.5	35.0	10.0
Merged-chr11-17185311-4	chr11	17184802	17185802	+	937.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024459, intron 2 of 5)	L1_Mur3|LINE|L1	26004.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	13.0	48.5	30.0	53.0	47.5	80.5
Merged-chr12-79089570-4	chr12	79089041	79090041	+	937.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029988, exon 1 of 4)	exon (NM_029988, exon 1 of 4)	129.0	NM_029988	110417.0	Mm.268317	NM_029988	ENSMUSG00000021120	Pigh	2210416H01Rik|A930028P05Rik	phosphatidylinositol glycan anchor biosynthesis, class H	protein-coding	3.0	10.5	7.5	3.5	5.0	0.5
Merged-chr1-174236188-4	chr1	174235686	174236686	+	937.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011465, intron 42 of 51)	intron (NM_011465, intron 42 of 51)	14790.0	NM_146715	258710.0	Mm.377647	NM_146715	ENSMUSG00000050788	Olfr419	MOR267-6	olfactory receptor 419	protein-coding	7.0	10.0	7.0	10.0	17.5	6.0
Merged-chr11-5960775-4	chr11	5960275	5961275	+	937.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019661, intron 2 of 6)	intron (NM_019661, intron 2 of 6)	5017.0	NM_019661	56418.0	Mm.294821	NM_019661	ENSMUSG00000002741	Ykt6	0610042I15Rik|1810013M05Rik|AW105923	YKT6 v-SNARE homolog (S. cerevisiae)	protein-coding	33.5	18.0	7.5	37.5	20.5	11.0
Merged-chr16-20621523-4	chr16	20621015	20622015	+	937.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028420)	promoter-TSS (NM_028420)	-237.0	NM_028420	73047.0	Mm.425977	NM_028420	ENSMUSG00000051146	Camk2n2	2900075A18Rik	calcium/calmodulin-dependent protein kinase II inhibitor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-150143700-4	chr1	150143199	150144199	+	937.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	21249.0	NR_110420	102639566.0	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4536699-4	chr12	4536207	4537207	+	937.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12594.0	NR_136891	102634330.0	Mm.402324	NR_136891	ENSMUSG00000112422	Gm31938	-	predicted gene, 31938	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25710041-2	chr7	25709541	25710541	+	937.0833130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9012.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115507572-4	chr6	115507075	115508075	+	937.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-37129.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-101516258-3	chr14	101515755	101516755	+	937.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	92936.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127526876-4	chr10	127526388	127527388	+	937.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183297, exon 2 of 2)	exon (NM_183297, exon 2 of 2)	-4444.0	NM_028230	108037.0	Mm.29890	NM_028230	ENSMUSG00000025403	Shmt2	2700043D08Rik|AA408223|AA986903|SHMT	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-7906676-4	chr15	7906161	7907161	+	937.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081402, intron 13 of 17)	intron (NM_001081402, intron 13 of 17)	91111.0	NM_001301357	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30657984-4	chr13	30657464	30658464	+	937.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2095.0	NM_001037955	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-122337703-3	chr9	122337212	122338212	+	937.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13904.0	NR_152865	67469.0	Mm.280254	NM_026179	ENSMUSG00000032540	Abhd5	1300003D03Rik|2010002J10Rik|CDS|CGI-58|IECN5|NCIE2	abhydrolase domain containing 5	protein-coding	0.0	2.5	0.5	0.0	2.5	0.0
Merged-chr3-54806561-3	chr3	54806069	54807069	+	937.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133231, intron 1 of 2)	intron (NM_133231, intron 1 of 2)	1222.0	NM_133231	170767.0	Mm.185735	NM_133231	ENSMUSG00000036615	Rfxap	5730495K23Rik	regulatory factor X-associated protein	protein-coding	3.0	10.5	18.5	7.0	6.0	18.5
Merged-chr9-63916093-3	chr9	63915626	63916626	+	937.044434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105933.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62510722-4	chr9	62510222	62511222	+	937.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175484, intron 1 of 11)	intron (NM_175484, intron 1 of 11)	26322.0	NM_175484	235431.0	Mm.335229	NM_175484	ENSMUSG00000041729	Coro2b	CLIPINC|E130012P22Rik	coronin, actin binding protein, 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24860496-4	chr16	24860005	24861005	+	937.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 9 of 12)	intron (NM_178665, intron 9 of 12)	138650.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-124080644-4	chr9	124080137	124081137	+	937.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEy-int|LTR|ERVK	-21546.0	NM_009915	12772.0	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109478462-4	chr3	109477955	109478955	+	937.037476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	-95552.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.0	8.5	16.5	11.5	17.5	15.0
Merged-chr5-24684825-5	chr5	24684325	24685325	+	937.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016736)	promoter-TSS (NM_016736)	-990.0	NM_016736	53312.0	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90487537-3	chr2	90486966	90487966	+	937.015869	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	(CA)n|Simple_repeat|Simple_repeat	-8292.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	16.5	50.0	18.5	17.0	41.5	15.5
Merged-chr8-88266255-2	chr8	88265755	88266755	+	937.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6148.0	NM_007406	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0.0	1.5	0.0	0.0	1.5	0.0
Merged-chr7-12951469-1	chr7	12950969	12951969	+	937.0	f1_c57bl6.idr	Intergenic	Intergenic	-14369.0	NM_001362140	243834.0	Mm.133086	NM_178732	ENSMUSG00000004500	Zfp324	A930002M05|D430030K24Rik|ZF5128	zinc finger protein 324	protein-coding	13.0	6.0	1.0	0.5	3.5	5.0
Merged-chr16-33687589-4	chr16	33687105	33688105	+	937.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 1 of 14)	intron (NM_175256, intron 1 of 14)	3139.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114724051-2	chr11	114723551	114724551	+	937.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3361.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	0.0	0.0	0.0	5.5	0.0	0.0
Merged-chr17-34862284-4	chr17	34861792	34862792	+	937.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013484)	TTS (NM_013484)	222.0	NM_001142706	14962.0	Mm.653	NM_008198	ENSMUSG00000090231	Cfb	AI195813|AI255840|B|Bf|C2|Fb|H2-Bf	complement factor B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127770823-3	chr7	127770284	127771284	+	937.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198424, intron 1 of 1)	intron (NM_198424, intron 1 of 1)	969.0	NM_198424	269999.0	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58978783-3	chr15	58978312	58979312	+	937.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	45002.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117462959-2	chr8	117462459	117463459	+	937.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3694.0	NR_106046	102465653.0		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69906152-2	chr11	69905652	69906652	+	937.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013414, intron 8 of 28)	intron (NM_001013414, intron 8 of 28)	4336.0	NM_001013414	216860.0	Mm.268347	NM_001013414	ENSMUSG00000047284	Neurl4	-	neuralized E3 ubiquitin protein ligase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52396794-2	chr3	52396294	52397294	+	937.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120170.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80497918-4	chr15	80497419	80498419	+	937.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163189, intron 4 of 5)	ORR1A2|LTR|ERVL-MaLR	-59316.0	NR_155274	102633578.0	Mm.397484	NR_155274	ENSMUSG00000115888	Gm31369	-	predicted gene, 31369	ncRNA	0.0	0.0	1.0	0.5	0.0	1.0
Merged-chr10-7271626-4	chr10	7271172	7272172	+	937.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59435.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	3.5	9.5	5.0	3.5	7.5	8.5
Merged-chr7-99550539-1	chr7	99550039	99551039	+	937.0	f1_c57bl6.idr	intron (NM_178220, intron 1 of 14)	ORR1D1|LTR|ERVL-MaLR	-1730.0	NR_029760	723840.0		NR_029760	ENSMUSG00000065571	Mir326	Mirn326|mir-326|mmu-mir-326	microRNA 326	ncRNA	11.0	6.5	7.0	8.0	7.5	17.5
Merged-chr19-55301734-2	chr19	55301234	55302234	+	937.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360595, intron 9 of 9)	intron (NM_001360595, intron 9 of 9)	14302.0	NM_001360595	66980.0	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6	zinc finger, DHHC domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80166647-2	chr10	80166147	80167147	+	937.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	B3|SINE|B2	-1192.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-43490187-2	chr10	43489687	43490687	+	937.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199028, intron 1 of 3)	intron (NM_199028, intron 1 of 3)	-2452.0	NM_001359601	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139228710-1	chr4	139228210	139229210	+	937.0	f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	34599.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	25.5	102.5	79.0	30.5	80.0	56.0
Merged-chr7-31103525-1	chr7	31103025	31104025	+	937.0	f1_balb.idr	exon (NM_001276269, exon 5 of 13)	exon (NM_001276269, exon 5 of 13)	7472.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	0.5	12.5	6.5	0.0	12.0	4.5
Merged-chr4-142078205-4	chr4	142077702	142078702	+	937.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-6096.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25266812-2	chr7	25266312	25267312	+	937.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302811)	promoter-TSS (NM_001302811)	-887.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55919749-2	chr19	55919249	55920249	+	937.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142920, intron 11 of 11)	intron (NM_001142920, intron 11 of 11)	24428.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-4533774-1	chr5	4533274	4534274	+	937.0	f0_c57.idr	Intergenic	Intergenic	224442.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156042063-3	chr1	156041568	156042568	+	937.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172843, intron 2 of 6)	intron (NM_172843, intron 2 of 6)	1207.0	NM_022329	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	31.5	99.0	63.5	35.0	73.5	45.5
Merged-chr1-144273187-2	chr1	144272687	144273687	+	937.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24083.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77617480-2	chr10	77616980	77617980	+	937.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_125904, exon 5 of 5)	non-coding (NR_125904, exon 5 of 5)	3771.0	NR_125903	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116006215-2	chr11	116005715	116006715	+	937.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005608, intron 34 of 39)	intron (NM_001005608, intron 34 of 39)	6504.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	1.0	5.0	6.5	1.0	4.0	4.5
Merged-chr5-24360018-1	chr5	24359518	24360518	+	937.0	f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	-4801.0	NM_008713	18127.0	Mm.258415	NM_008713	ENSMUSG00000028978	Nos3	2310065A03Rik|Nos-3|eNOS|ecNOS	nitric oxide synthase 3, endothelial cell	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113322220-3	chr13	113321734	113322734	+	937.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112575.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88308064-2	chr1	88307564	88308564	+	937.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134252, intron 2 of 26)	intron (NM_134252, intron 2 of 26)	1352.0	NM_134252	171382.0	Mm.218753	NM_134252	ENSMUSG00000036251	Trpm8	CMR1|LTRPC6|LTrpC-6|TRPP8|Trp-p8	transient receptor potential cation channel, subfamily M, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-68195215-4	chr18	68194698	68195698	+	936.9874880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-32748.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	16.0	14.5	29.5	11.5	23.0	12.5
Merged-chr9-48984523-3	chr9	48983971	48984971	+	936.977783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175482)	promoter-TSS (NM_175482)	-914.0	NM_001359739	235323.0	Mm.21630	NM_175482	ENSMUSG00000032267	Usp28	9830148O20Rik|AU022237|mKIAA1515	ubiquitin specific peptidase 28	protein-coding	81.0	216.5	128.5	92.0	195.0	136.5
Merged-chr6-148761605-4	chr6	148761113	148762113	+	936.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69854.0	NM_001081113	320727.0	Mm.260105	NM_001081113	ENSMUSG00000040029	Ipo8	6230418K12Rik|Abcc10|C130009K11Rik|MRP7|OM-1|Om1|Ranbp8	importin 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67424128-3	chr15	67423628	67424628	+	936.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	197359.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	1.0	5.5	0.0	0.0	0.0	0.0
Merged-chr2-145510887-4	chr2	145510394	145511394	+	936.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053195, intron 3 of 16)	intron (NM_053195, intron 3 of 16)	44088.0	NM_001037929	627302.0	Mm.445953	NM_001037929		Gm14092	-	predicted gene 14092	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66769880-2	chr15	66769380	66770380	+	936.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 40 of 47)	intron (NM_009375, intron 40 of 47)	61949.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152804698-2	chr2	152804198	152805198	+	936.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	23791.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154207440-2	chr4	154206940	154207940	+	936.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162977, intron 3 of 36)	intron (NM_001162977, intron 3 of 36)	36727.0	NM_001162977	230971.0	Mm.275216	NM_172273	ENSMUSG00000057751	Megf6	2600001P17Rik|Egfl3	multiple EGF-like-domains 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120748286-4	chr11	120747780	120748780	+	936.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-16259.0	NM_007621	12409.0	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84128495-4	chr17	84128018	84129018	+	936.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_B|LTR|ERVK	49858.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-97633072-4	chr1	97632573	97633573	+	936.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	28603.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-62865647-4	chr14	62865158	62866158	+	936.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_105860)	TTS (NR_105860)	116.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	69.5	134.5	92.0	38.0	64.5	42.5
Merged-chr2-124775865-4	chr2	124775237	124776237	+	936.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122156.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-53000534-4	chr2	53000048	53001048	+	936.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	142680.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5200093-3	chr6	5199618	5200618	+	936.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6172.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95137932-3	chr8	95137445	95138445	+	936.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010631, exon 2 of 20)	exon (NM_010631, exon 2 of 20)	4595.0	NM_010631	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	1.0	2.0	1.5	6.5	5.5	0.0
Merged-chr17-5521749-4	chr17	5521258	5522258	+	936.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	29158.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80083429-4	chr17	80082935	80083935	+	936.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21167.0	NM_144802	72692.0	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76363960-4	chr16	76363562	76364562	+	936.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	RLTR15|LTR|ERVK	8987.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-40224973-4	chr1	40224490	40225490	+	936.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008362)	promoter-TSS (NM_008362)	-90.0	NM_008362	16177.0	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134342771-4	chr5	134342283	134343283	+	936.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16329.0	NR_039544	100628570.0		NR_039544	ENSMUSG00000093311	Mir3965	mmu-mir-3965|mu-mir-3965	microRNA 3965	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12011089-4	chr19	12010565	12011565	+	936.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25675.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101352640-3	chr7	101352133	101353133	+	936.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	4564.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	6.0	0.0	0.5	0.0	0.0	0.0
Merged-chr3-149221031-3	chr3	149220586	149221586	+	936.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53651.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	6.5	0.0	7.5	6.5	15.0	8.0
Merged-chr9-44581613-3	chr9	44581128	44582128	+	936.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23264.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	7.5	7.0	7.0	6.5	10.0	5.5
Merged-chr11-82561725-4	chr11	82561219	82562219	+	936.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-71634.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-43351443-2	chr11	43350943	43351943	+	936.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23018.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149638100-4	chr4	149637603	149638603	+	936.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023051, intron 9 of 18)	intron (NM_023051, intron 9 of 18)	17464.0	NR_105990	102465983.0		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-80580952-10	chr2	80580468	80581468	+	936.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355410, exon 1 of 32)	5' UTR (NM_001355410, exon 1 of 32)	214.0	NM_001290745	50884.0	Mm.25203	NM_016965	ENSMUSG00000027002	Nckap1	C79304|H19|Hem-2|Hem2|Nap1|mKIAA0587|mh19|p125Nap1	NCK-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28767846-2	chr7	28767346	28768346	+	936.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_022432, intron 2 of 15)	intron (NM_022432, intron 2 of 15)	1094.0	NM_001122766	64383.0	Mm.272443	NM_022432	ENSMUSG00000015149	Sirt2	5730427M03Rik|SIR2L2|Sir2l	sirtuin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-104459571-4	chr5	104459074	104460074	+	936.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008861, exon 1 of 15)	5' UTR (NM_008861, exon 1 of 15)	117.0	NM_008861	18764.0	Mm.6442	NM_008861	ENSMUSG00000034462	Pkd2	C030034P18Rik|PC2|TRPP2	polycystic kidney disease 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97681987-4	chr3	97681490	97682490	+	936.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8572.0	NR_106084	102466229.0		NR_106084	ENSMUSG00000098381	Mir7225	Gm27499|mmu-mir-7225	microRNA 7225	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125432898-2	chr5	125432398	125433398	+	936.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_203319, intron 1 of 26)	intron (NM_203319, intron 1 of 26)	1150.0	NM_203319	208144.0	Mm.296385	NM_203319	ENSMUSG00000029480	Dhx37	Gm1050|Gm451|mKIAA1517	DEAH (Asp-Glu-Ala-His) box polypeptide 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-113378507-4	chr7	113377998	113378998	+	936.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9159.0	NM_133700	68815.0	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25362410-4	chr10	25361913	25362913	+	936.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 1 of 16)	intron (NM_001358754, intron 1 of 16)	2615.0	NM_001358751	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0.5	19.5	19.5	7.5	7.0	7.0
Merged-chr17-35195444-4	chr17	35194935	35195935	+	936.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_105939)	TTS (NR_105939)	463.0	NR_105939	102465588.0		NR_105939	ENSMUSG00000098291	Mir6973a	Gm27967|mmu-mir-6973a	microRNA 6973a	ncRNA	5.0	10.5	4.0	42.0	94.0	59.5
Merged-chr13-12395844-3	chr13	12395324	12396324	+	936.7333369999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144835, exon 2 of 45)	exon (NM_144835, exon 2 of 45)	449.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181459297-5	chr2	181458681	181459681	+	936.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028125, intron 1 of 2)	CpG	245.0	NM_028125	72147.0	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80734877-4	chr17	80734373	80735373	+	936.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6848.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95325315-6	chr13	95324811	95325811	+	936.7222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028106, exon 1 of 2)	5' UTR (NM_028106, exon 1 of 2)	486.0	NM_028106	72114.0	Mm.3774	NM_028106	ENSMUSG00000041995	Zbed3	0610037K01Rik|2610005H11Rik|AU018975|AU024588	zinc finger, BED type containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-62616109-3	chr5	62615611	62616611	+	936.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 28 of 32)	intron (NM_178407, intron 28 of 32)	150066.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	8.5	0.0	4.0	14.0	3.0	0.5
Merged-chr8-26884590-4	chr8	26884103	26885103	+	936.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60180.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-98060038-4	chr3	98059530	98060530	+	936.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 2 of 33)	intron (NM_010928, intron 2 of 33)	46492.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45708367-4	chr7	45707890	45708890	+	936.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016974, exon 3 of 4)	exon (NM_016974, exon 3 of 4)	3143.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	3.0	3.5	3.5	2.0	5.5	4.0
Merged-chr13-91636993-4	chr13	91636510	91637510	+	936.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 4 of 15)	intron (NM_001360776, intron 4 of 15)	-104511.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	14.0	41.0	20.5	40.5	76.5	25.0
Merged-chr11-61929494-4	chr11	61929002	61930002	+	936.69165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019921, intron 1 of 14)	intron (NM_019921, intron 1 of 14)	755.0	NM_019921	56697.0	Mm.274404	NM_019921	ENSMUSG00000047804	Akap10	1500031L16Rik|B130049N18Rik|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124262862-3	chr6	124262371	124263371	+	936.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31087.0	NM_001104642	232367.0	Mm.469872	NM_001104642	ENSMUSG00000072778	Vmn2r27	EG232367	vomeronasal 2, receptor27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-74983240-3	chr14	74982734	74983734	+	936.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046078, intron 2 of 2)	intron (NR_046078, intron 2 of 2)	8148.0	NR_046078	100043169.0	Mm.145900	NR_046078	ENSMUSG00000115019	Gm4278	-	predicted gene 4278	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58503622-3	chr16	58503131	58504131	+	936.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 2 of 10)	MTD|LTR|ERVL-MaLR	19795.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35865916-4	chr17	35865380	35866380	+	936.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175242)	promoter-TSS (NM_175242)	-248.0	NM_001146710	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	8.5	19.0	16.5	0.0	7.5	9.0
Merged-chr9-124068297-3	chr9	124067798	124068798	+	936.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33885.0	NM_009915	12772.0	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75307215-6	chr18	75306894	75307894	+	936.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10065.0	NR_045393	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145719718-2	chr2	145719218	145720218	+	936.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 2 of 3)	L1_Mur3|LINE|L1	18523.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-85139472-4	chr16	85138978	85139978	+	936.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	34229.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	32.5	79.0	35.0	25.5	67.5	30.5
Merged-chr10-42118716-4	chr10	42118209	42119209	+	936.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100327.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46312186-8	chr11	46311616	46312616	+	936.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001252460, exon 1 of 31)	5' UTR (NM_001252460, exon 1 of 31)	242.0	NM_001252460	76884.0	Mm.154358	NM_133769	ENSMUSG00000020340	Cyfip2	1500004I01Rik|6430511D02Rik|AA930218|AU022376|Pir121|mKIAA1168	cytoplasmic FMR1 interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-5358119-4	chr5	5357585	5358585	+	936.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	22166.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	5.5	10.0	12.0	5.5	0.5	5.0
Merged-chr11-43494221-2	chr11	43493721	43494721	+	936.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19915.0	NM_026979	69183.0	Mm.390374	NM_026979	ENSMUSG00000046491	C1qtnf2	1810033K05Rik|CTRP2	C1q and tumor necrosis factor related protein 2	protein-coding	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr11-59191103-4	chr11	59190607	59191607	+	936.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008193, intron 1 of 7)	intron (NM_008193, intron 1 of 7)	845.0	NM_008193	14923.0	Mm.3624	NM_008193	ENSMUSG00000020444	Guk1	AA409738|AL033299|AL033300|AV026611|Gmk|Guk-1	guanylate kinase 1	protein-coding	62.0	165.5	151.0	74.5	182.5	166.5
Merged-chr2-142900591-4	chr2	142900096	142901096	+	936.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 1 of 26)	intron (NM_001355123, intron 1 of 26)	868.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31438209-2	chr14	31437709	31438709	+	936.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2109.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65820087-3	chr3	65819591	65820591	+	936.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001166659, exon 12 of 13)	exon (NM_001166659, exon 12 of 13)	138158.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	12.0	21.5	11.5	10.0	24.5	18.0
Merged-chr17-70728930-4	chr17	70728455	70729455	+	936.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	(CA)n|Simple_repeat|Simple_repeat	117822.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	3.5	16.5	3.5	10.5	9.0	6.0
Merged-chr14-121279282-4	chr14	121278815	121279815	+	936.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134082, intron 24 of 26)	intron (NM_134082, intron 24 of 26)	30609.0	NR_155502	320268.0	Mm.435974	NR_155502		B930095G15Rik	-	RIKEN cDNA B930095G15 gene	ncRNA	0.0	6.5	0.5	1.5	0.0	0.0
Merged-chr7-19956662-4	chr7	19956150	19957150	+	936.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5907.0	NM_027308	70080.0	Mm.98583	NM_027308	ENSMUSG00000040498	Igsf23	2210010C17Rik	immunoglobulin superfamily, member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58543379-4	chr13	58542892	58543892	+	936.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67485.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4351422-3	chr18	4350910	4351910	+	936.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 1 of 7)	intron (NM_007746, intron 1 of 7)	1543.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170901745-4	chr1	170901248	170902248	+	936.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	11193.0	NM_001029984	435653.0	Mm.337931	NM_001029984	ENSMUSG00000070524	Fcrlb	FREB-2|FREB2|FcRL2|Fcrlm2|Fcry|mFCRL2	Fc receptor-like B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54327843-4	chr6	54327302	54328302	+	936.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030024, intron 1 of 1)	CpG	790.0	NM_030024	78004.0	Mm.41984	NM_030024	ENSMUSG00000045725	Prr15	E130201N16Rik|G90	proline rich 15	protein-coding	3.0	7.0	1.5	1.5	0.0	2.0
Merged-chr4-139205159-4	chr4	139204659	139205659	+	936.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	ORR1D2|LTR|ERVL-MaLR	11048.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	37.5	86.5	56.5	26.0	64.0	43.0
Merged-chr6-127582109-4	chr6	127581632	127582632	+	936.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033464, intron 1 of 6)	intron (NM_001033464, intron 1 of 6)	4157.0	NM_001033464	381812.0	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	0.0	2.0	0.0	0.0	2.0	0.0
Merged-chr3-38421960-3	chr3	38421455	38422455	+	936.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62861.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46515551-3	chr19	46515063	46516063	+	936.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_053100, exon 6 of 6)	exon (NM_053100, exon 6 of 6)	13915.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26012311-4	chr17	26011835	26012835	+	936.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162869, intron 5 of 14)	intron (NM_001162869, intron 5 of 14)	9525.0	NM_153140	215445.0	Mm.41191	NM_153140	ENSMUSG00000037098	Rab11fip3	Cart1|D030060O14Rik|Rab11-FIP3|mKIAA0665	RAB11 family interacting protein 3 (class II)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32489969-4	chr12	32489484	32490484	+	936.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111195.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139229115-2	chr7	139228615	139229615	+	936.541626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001143755)	TTS (NM_001143755)	-15808.0	NM_001162540	57740.0	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	8.0	13.5	9.5	2.0	1.5	1.5
Merged-chr3-31097070-6	chr3	31096574	31097574	+	936.5277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011386, exon 2 of 7)	5' UTR (NM_011386, exon 2 of 7)	2016.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50849456-4	chr9	50848959	50849959	+	936.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7465.0	NM_001034085	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	0.5	0.0	1.0	0.0	0.5	0.0
Merged-chr5-135460331-4	chr5	135459829	135460829	+	936.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 2 of 30)	intron (NM_146001, intron 2 of 30)	-65783.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119818729-2	chr8	119818229	119819229	+	936.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 3 of 3)	intron (NM_028071, intron 3 of 3)	21850.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105566636-2	chr5	105566137	105567137	+	936.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	47166.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116607073-8	chr7	116606569	116607569	+	936.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102700.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21030421-2	chr19	21029888	21030888	+	936.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74322.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0.5	11.0	0.0	1.5	1.5	4.5
Merged-chr19-43646371-1	chr19	43645871	43646871	+	936.5	f0_balb.idr	Intergenic	ID_B1|SINE|B4	-4364.0	NR_152201	100043245.0	Mm.402688	NR_152201		Gm4311	-	predicted gene 4311	ncRNA	0.0	7.5	2.0	5.0	5.5	8.5
Merged-chr11-60143258-3	chr11	60142755	60143755	+	936.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037764, intron 1 of 4)	MIR3|SINE|MIR	3173.0	NM_001037764	19377.0	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-27185114-4	chr5	27184612	27185612	+	936.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207282, intron 1 of 25)	intron (NM_207282, intron 1 of 25)	-76823.0	NM_001136060	13483.0	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	3.0	6.5	3.0	1.5	12.0	2.0
Merged-chr2-25240926-4	chr2	25240432	25241432	+	936.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1035.0	NM_026415	67859.0	Mm.46431	NM_026415	ENSMUSG00000036731	Cysrt1	2310002J15Rik|AV023762	cysteine rich tail 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-30469749-2	chr15	30469249	30470249	+	936.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 2 of 21)	intron (NM_001355502, intron 2 of 21)	297156.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125147457-4	chr5	125146993	125147993	+	936.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011424, intron 1 of 46)	intron (NM_011424, intron 1 of 46)	31721.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	3.0	15.5	9.5	10.5	28.5	14.0
Merged-chr10-37229287-2	chr10	37228787	37229787	+	936.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90361.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-57623872-2	chr19	57623377	57624377	+	936.5	f0_balb.idr|f1_balb.idr	intron (NM_181415, intron 1 of 28)	intron (NM_181415, intron 1 of 28)	12843.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	0.0	0.0	1.0	1.0	7.0	1.5
Merged-chr6-125602696-2	chr6	125602196	125603196	+	936.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 13 of 51)	intron (NM_011708, intron 13 of 51)	49748.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-31951653-2	chr12	31951152	31952152	+	936.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1407.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	25.5	65.0	46.0	28.5	75.5	40.5
Merged-chr3-95511970-4	chr3	95511470	95512470	+	936.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12760.0	NM_007802	13038.0	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	1.5	1.0	2.0	0.0	0.0	2.0
Merged-chr7-19578855-2	chr7	19578355	19579355	+	936.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022409, intron 2 of 2)	B1_Mur1|SINE|Alu	1568.0	NM_022409	63872.0	Mm.23310	NM_022409	ENSMUSG00000011267	Zfp296	2210018A16Rik|Znf296	zinc finger protein 296	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135765585-2	chr5	135765085	135766085	+	936.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289557, intron 3 of 6)	intron (NM_001289557, intron 3 of 6)	12716.0	NM_001289554	76571.0	Mm.247666	NM_029659	ENSMUSG00000019178	Styxl1	1700011C14Rik|Dusp24|Mkstyx	serine/threonine/tyrosine interacting-like 1	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr18-56469434-4	chr18	56468873	56469873	+	936.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	37241.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	0.0	3.0	0.0	0.0	3.0	0.0
Merged-chr19-21067218-2	chr19	21066718	21067718	+	936.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37492.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	14.0	50.0	27.0	37.0	82.0	37.0
Merged-chr9-60985445-2	chr9	60984945	60985945	+	936.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31624.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167624987-2	chr2	167624487	167625487	+	936.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023230, intron 1 of 3)	intron (NM_023230, intron 1 of 3)	7018.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110697844-2	chr12	110697344	110698344	+	936.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1449.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90068942-2	chr9	90068442	90069442	+	936.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312649, intron 8 of 10)	URR1A|DNA|hAT-Charlie	14675.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20967815-2	chr9	20967315	20968315	+	936.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010333, exon 2 of 2)	exon (NM_010333, exon 2 of 2)	-7927.0	NM_001199432	13433.0	Mm.128580	NM_010066	ENSMUSG00000004099	Dnmt1	Cxxc9|Dnmt|Dnmt1o|MCMT|MTase|Met-1|Met1|MommeD2|m.MmuI	DNA methyltransferase (cytosine-5) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-98087059-2	chr3	98086559	98087559	+	936.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 5 of 33)	intron (NM_010928, intron 5 of 33)	73521.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39574492-2	chr6	39573992	39574992	+	936.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_178873, exon 1 of 8)	exon (NM_178873, exon 1 of 8)	616.0	NM_178873	57869.0	Mm.247957	NM_178873	ENSMUSG00000046947	Adck2	AA408112|BB006057	aarF domain containing kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102108082-2	chr15	102107582	102108582	+	936.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355636, intron 10 of 28)	intron (NM_001355636, intron 10 of 28)	5148.0	NM_153533	209039.0	Mm.29389	NM_153533	ENSMUSG00000037003	Tns2	C1-ten|Tenc1|nep|nph	tensin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99541763-4	chr5	99541265	99542265	+	936.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	187295.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	2.0	0.0	2.0	6.0	0.0	7.0
Merged-chr2-154406794-4	chr2	154406266	154407266	+	936.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009228, intron 1 of 7)	MIR3|SINE|MIR	1318.0	NM_009228	20648.0	Mm.1541	NM_009228	ENSMUSG00000027488	Snta1	AW228934|Snt1	syntrophin, acidic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49888370-4	chr16	49887881	49888881	+	936.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 4 of 9)	Tigger6a|DNA|TcMar-Tigger	32727.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108213787-4	chr6	108213280	108214280	+	936.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 1 of 61)	intron (NM_010585, intron 1 of 61)	684.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	0.5	6.5	6.5	0.0	3.5	0.0
Merged-chr3-100534576-4	chr3	100534087	100535087	+	936.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-45395.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	2.0	1.0	2.5	2.0	0.0	0.0
Merged-chr16-19985522-4	chr16	19985019	19986019	+	936.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-2470.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103362948-14	chr11	103362439	103363439	+	936.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205236, intron 1 of 17)	intron (NM_001205236, intron 1 of 17)	753.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	10.0	14.5	25.0	11.5	30.5	12.0
Merged-chr11-63230960-4	chr11	63230462	63231462	+	936.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57D|LTR|ERV1	98159.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-30205809-4	chr6	30205307	30206307	+	936.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	29184.0	NR_038124	100463519.0	Mm.361139	NR_038124		BB283400	BF465573|Rncr4	expressed sequence BB283400	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126797740-6	chr7	126797213	126798213	+	936.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001177308, exon 2 of 9)	exon (NM_001177308, exon 2 of 9)	1465.0	NM_001177307	11674.0	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68844844-4	chr10	68844358	68845358	+	936.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121112.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-33720386-2	chr18	33719902	33720902	+	936.416626	f0_c57.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	-74490.0	NR_038152	69749.0	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	49.5	49.0	16.0	2.5	6.5	2.5
Merged-chr10-14115176-4	chr10	14114667	14115667	+	936.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 4 of 12)	Lx9|LINE|L1	148788.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.0	5.5	4.5	1.0	4.5	9.0
Merged-chr7-81529101-4	chr7	81528599	81529599	+	936.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035501)	promoter-TSS (NR_035501)	-817.0	NR_035501	100316717.0		NR_035501	ENSMUSG00000104618	Mir1839	mir-1839|mmu-mir-1839	microRNA 1839	ncRNA	3.5	10.5	2.5	3.5	10.5	2.5
Merged-chr4-59569766-4	chr4	59569271	59570271	+	936.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-11792.0	NM_001301367	72479.0	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68446130-3	chr11	68445652	68446652	+	936.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	URR1B|DNA|hAT-Charlie	14027.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0.0	0.0	8.0	0.0	3.5	3.0
Merged-chr2-75706594-4	chr2	75706097	75707097	+	936.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1934.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	23.5	30.0	35.5	18.5	29.0	33.5
Merged-chr15-59263666-3	chr15	59263139	59264139	+	936.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43309.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	10.0	7.5	9.5	3.0	9.5	7.5
Merged-chr9-115309202-2	chr9	115308690	115309690	+	936.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_024222, intron 1 of 15)	intron (NM_024222, intron 1 of 15)	1231.0	NM_024222	68292.0	Mm.296158	NM_024222	ENSMUSG00000032437	Stt3b	1300006C19Rik|Simp	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	protein-coding	46.0	64.0	72.0	37.0	55.0	42.5
Merged-chr2-133020624-4	chr2	133020117	133021117	+	936.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74581.0	NM_198029	241639.0	Mm.209784	NM_198029	ENSMUSG00000027356	Fermt1	5830467P10Rik|Kindlin-1	fermitin family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136726876-4	chr1	136726376	136727376	+	936.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30665.0	NR_037986	100503474.0	Mm.428276	NR_037986		Platr22	Gm16880	pluripotency associated transcript 22	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28726786-4	chr7	28726283	28727283	+	936.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310687, intron 2 of 6)	LTR41|LTR|ERVL	9993.0	NM_015796	50760.0	Mm.358659	NM_015796	ENSMUSG00000030598	Fbxo17	Fbg4|Fbx17|Fbxo26	F-box protein 17	protein-coding	2.0	16.5	3.0	6.0	12.0	2.0
Merged-chr12-84004739-4	chr12	84004215	84005215	+	936.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-4787.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-15792959-4	chr6	15792456	15793456	+	936.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 4 of 4)	intron (NM_175088, intron 4 of 4)	72295.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-97009239-4	chr5	97008747	97009747	+	936.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 1 of 15)	intron (NM_080708, intron 1 of 15)	11558.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-136113178-4	chr3	136112717	136113717	+	936.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 7 of 16)	intron (NM_001033350, intron 7 of 16)	212849.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95758632-3	chr3	95758128	95759128	+	936.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3651.0	NR_151588	71807.0	Mm.271754	NM_027931	ENSMUSG00000028107	Tars2	2610024N01Rik|AI429208|Tarsl1|thrRS	threonyl-tRNA synthetase 2, mitochondrial (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97849639-7	chr15	97849144	97850144	+	936.357117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5142.0	NM_001204278	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32620167-4	chr11	32619667	32620667	+	936.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 18 of 18)	intron (NM_009288, intron 18 of 18)	-22388.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	4.5	7.5	6.5	4.5	6.0	6.0
Merged-chr6-149010924-2	chr6	149010424	149011424	+	936.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177192, intron 14 of 20)	intron (NM_177192, intron 14 of 20)	-64454.0	NM_001361398	56306.0	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Sinhcaf|Tera	family with sequence similarity 60, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46524436-4	chr18	46523976	46524976	+	936.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_173423, exon 2 of 3)	exon (NM_173423, exon 2 of 3)	1495.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-36962608-4	chr14	36962096	36963096	+	936.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027045, intron 1 of 10)	intron (NM_027045, intron 1 of 10)	6168.0	NM_027045	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122022456-3	chr8	122021950	122022950	+	936.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016812, intron 12 of 13)	intron (NM_016812, intron 12 of 13)	44426.0	NR_106096	102466915.0		NR_106096	ENSMUSG00000099140	Mir7237	Gm27482|mmu-mir-7237	microRNA 7237	ncRNA	0.0	5.5	9.0	0.0	1.5	1.0
Merged-chr2-27593497-4	chr2	27593007	27594007	+	936.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78360.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80719383-3	chr17	80718846	80719846	+	936.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360278, intron 1 of 33)	Charlie1|DNA|hAT-Charlie	8679.0	NM_001360278	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82845510-4	chr11	82845013	82846013	+	936.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164570, intron 1 of 7)	intron (NM_001164570, intron 1 of 7)	-16470.0	NM_026097	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-43390584-3	chr16	43390093	43391093	+	936.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	29603.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47182297-3	chr17	47181797	47182797	+	936.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 3 of 19)	intron (NM_001097623, intron 3 of 19)	41355.0	NM_001097623	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135887873-4	chr5	135887380	135888380	+	936.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013560)	promoter-TSS (NM_013560)	-39.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-148533736-3	chr6	148533305	148534305	+	936.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80504.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-61138694-3	chr2	61138209	61139209	+	936.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-163558.0	NR_045335	100038493.0	Mm.388076	NR_045335	ENSMUSG00000075325	Gm13582	-	predicted gene 13582	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29442002-3	chr7	29441520	29442520	+	936.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081028, intron 2 of 22)	intron (NM_001081028, intron 2 of 22)	63440.0	NM_001081028	74206.0	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23911519-3	chr13	23911020	23912020	+	936.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177016, intron 1 of 11)	Lx8b|LINE|L1	3487.0	NM_177016	319848.0	Mm.97959	NM_177016	ENSMUSG00000021336	Slc17a4	9130214H05Rik	solute carrier family 17 (sodium phosphate), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-42352115-4	chr6	42351674	42352674	+	936.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289618, intron 4 of 9)	intron (NM_001289618, intron 4 of 9)	2346.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84296554-4	chr2	84296058	84297058	+	936.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	128708.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	1.0	1.5	1.5	6.0	0.0	3.0
Merged-chr17-35001946-5	chr17	35001429	35002429	+	936.2999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011690, intron 2 of 29)	intron (NM_011690, intron 2 of 29)	1022.0	NM_011690	22321.0	Mm.28420	NM_011690	ENSMUSG00000007029	Vars	Bat6|D17H6S56E|G7a|Vars2	valyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72818777-4	chr5	72818308	72819308	+	936.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	MIRb|SINE|MIR	49640.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42026355-4	chr19	42025855	42026855	+	936.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	-9683.0	NM_020033	56642.0	Mm.143737	NM_020033	ENSMUSG00000025172	Ankrd2	Arpp|mArpp	ankyrin repeat domain 2 (stretch responsive muscle)	protein-coding	0.0	1.0	0.0	3.5	2.5	4.0
Merged-chr2-120464935-3	chr2	120464422	120465422	+	936.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040608, intron 1 of 4)	ID4_|SINE|ID	1329.0	NM_007601	12335.0	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	0.0	0.0	2.5	0.0	0.0	2.5
Merged-chr18-60932493-4	chr18	60932026	60933026	+	936.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177407, intron 1 of 17)	intron (NM_177407, intron 1 of 17)	6894.0	NM_177407	12322.0	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0.0	7.5	1.0	0.0	0.0	1.5
Merged-chr10-75151536-4	chr10	75151032	75152032	+	936.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081412, intron 8 of 22)	intron (NM_001081412, intron 8 of 22)	-60541.0	NM_153406	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132714351-3	chr7	132713852	132714852	+	936.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175268, exon 5 of 5)	3' UTR (NM_175268, exon 5 of 5)	62564.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119600173-4	chr13	119599590	119600590	+	936.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177666, intron 2 of 3)	intron (NM_001177666, intron 2 of 3)	-23729.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111572619-2	chr12	111572119	111573119	+	936.25	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045295, exon 2 of 2)	non-coding (NR_045295, exon 2 of 2)	1783.0	NR_045295	100504687.0	Mm.26072	NR_045295	ENSMUSG00000096995	2810029C07Rik	AU017849	RIKEN cDNA 2810029C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19506155-4	chr10	19505662	19506662	+	936.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152784, exon 3 of 4)	non-coding (NR_152784, exon 3 of 4)	11519.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	4.0	0.0	2.5	4.0	0.0	8.0
Merged-chr14-45218063-4	chr14	45217588	45218588	+	936.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310534, intron 2 of 20)	intron (NM_001310534, intron 2 of 20)	1337.0	NM_172597	70561.0	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-98350786-3	chr9	98350310	98351310	+	936.244446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357445, intron 1 of 3)	intron (NM_001357445, intron 1 of 3)	54240.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	14.5	61.0	69.5	63.5	125.0	73.5
Merged-chr2-35397730-4	chr2	35397246	35398246	+	936.2416380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080709)	promoter-TSS (NM_001080709)	-572.0	NM_001272040	74854.0	Mm.159338	NM_001080709	ENSMUSG00000079421	4930402F06Rik	-	RIKEN cDNA 4930402F06 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-12546679-3	chr4	12546187	12547187	+	936.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F-int|LTR|ERVL-MaLR	-360150.0	NM_173746	208820.0	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55544604-4	chr19	55544114	55545114	+	936.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	L1MB8|LINE|L1	157590.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84701753-4	chr8	84701249	84702249	+	936.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008535, exon 1 of 4)	5' UTR (NM_008535, exon 1 of 4)	292.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	24.0	56.5	36.5	16.0	58.5	35.5
Merged-chr2-131196723-4	chr2	131196195	131197195	+	936.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111075, intron 13 of 14)	intron (NM_001111075, intron 13 of 14)	9747.0	NM_001111075	12531.0	Mm.38444	NM_023117	ENSMUSG00000027330	Cdc25b	AI604853	cell division cycle 25B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116127489-2	chr3	116126989	116127989	+	936.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_011693, intron 2 of 8)	intron (NM_011693, intron 2 of 8)	2199.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	16.0	28.5	21.5	15.5	30.0	15.0
Merged-chr2-73487755-3	chr2	73487231	73488231	+	936.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-1978.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119390965-3	chr11	119390474	119391474	+	936.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_035453)	TTS (NR_035453)	502.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	31.5	103.0	78.5	15.0	90.0	58.5
Merged-chr2-58920335-3	chr2	58919808	58920808	+	936.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 10 of 13)	L2a|LINE|L2	165124.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115161168-3	chr11	115160697	115161697	+	936.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163753, exon 9 of 9)	3' UTR (NM_001163753, exon 9 of 9)	-2144.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	34.0	74.5	64.5	27.0	66.0	59.5
Merged-chr17-5025584-4	chr17	5025091	5026091	+	936.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 1 of 19)	intron (NM_001085355, intron 1 of 19)	30517.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115361746-3	chr6	115361199	115362199	+	936.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308354)	promoter-TSS (NM_001308354)	555.0	NM_001308352	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-77464311-3	chr1	77463816	77464816	+	936.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007936, intron 3 of 17)	intron (NM_007936, intron 3 of 17)	32452.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	0.0	0.0	1.5	0.0	0.0	1.0
Merged-chr14-123837601-3	chr14	123837113	123838113	+	936.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145467, intron 3 of 10)	intron (NM_145467, intron 3 of 10)	-150022.0	NR_045479	69393.0	Mm.491348	NR_045479	ENSMUSG00000099994	1700024B18Rik	-	RIKEN cDNA 1700024B18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-15862273-3	chr16	15861709	15862709	+	936.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359003, intron 3 of 3)	intron (NM_001359003, intron 3 of 3)	1160.0	NM_029354	72083.0	Mm.22351	NM_029354	ENSMUSG00000022671	Mzt2	2410018G20Rik|2610001E06Rik|Fam128|Fam128b	mitotic spindle organizing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-121018423-4	chr4	121017935	121018935	+	936.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1188.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	2.0	1.0	2.0	4.5	12.5	3.5
Merged-chr1-152430041-4	chr1	152429533	152430533	+	936.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177756, intron 1 of 11)	L1M3|LINE|L1	30166.0	NM_177756	269132.0	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79351230-2	chr15	79350730	79351730	+	936.0833130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304832, intron 1 of 2)	intron (NM_001304832, intron 1 of 2)	2828.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	11.5	0.0	0.0	0.0	0.0	0.0
Merged-chr6-70769027-3	chr6	70768537	70769537	+	936.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009075, intron 8 of 8)	intron (NM_009075, intron 8 of 8)	23138.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119488009-4	chr13	119487531	119488531	+	936.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039244)	promoter-TSS (NM_001039244)	-8.0	NM_001039244	633640.0	Mm.46679	NM_001039244	ENSMUSG00000074634	Tmem267	EG633640|Gm7120	transmembrane protein 267	protein-coding	2.0	3.0	0.0	0.0	3.0	0.0
Merged-chr15-83295096-4	chr15	83294609	83295609	+	936.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43335.0	NM_001004150	239559.0	Mm.323805	NM_001004150	ENSMUSG00000047878	A4galt	-	alpha 1,4-galactosyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65505996-4	chr18	65505445	65506445	+	936.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	MTC-int|LTR|ERVL-MaLR	-74285.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	12.0	63.0	65.0	84.5	232.0	174.5
Merged-chr3-109425684-3	chr3	109425219	109426219	+	936.0833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	85036.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.0	2.0	2.5	0.0	2.0	0.0
Merged-chr6-93757576-4	chr6	93757059	93758059	+	936.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029850, intron 9 of 23)	intron (NM_001029850, intron 9 of 23)	155404.0	NR_104594	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	35.0	33.0	45.5	45.5	61.0	80.5
Merged-chr4-134624276-4	chr4	134623752	134624752	+	936.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 2 of 11)	intron (NM_207237, intron 2 of 11)	-56401.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-123207663-4	chr7	123207147	123208147	+	936.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7219.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93606804-4	chr16	93606291	93607291	+	936.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1046.0	NM_007620	12408.0	Mm.26940	NM_007620	ENSMUSG00000051483	Cbr1	AW261796|CR|Cbr	carbonyl reductase 1	protein-coding	1.5	0.0	5.0	0.0	3.0	2.0
Merged-chr15-9070453-4	chr15	9069991	9070991	+	936.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286255)	promoter-TSS (NM_001286255)	-769.0	NM_001286255	68646.0	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111676919-4	chr12	111676410	111677410	+	936.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1195.0	NM_001099792	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-60791696-2	chr19	60791196	60792196	+	936.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-1003.0	NM_010123	13669.0	Mm.2238	NM_010123	ENSMUSG00000024991	Eif3a	A830012B05Rik|Csma|Eif3|Eif3s10|mKIAA0139	eukaryotic translation initiation factor 3, subunit A	protein-coding	26.0	38.5	13.0	12.5	21.5	12.0
Merged-chr1-177986910-4	chr1	177986405	177987405	+	936.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4493.0	NR_155538	545391.0	Mm.442974	NM_001034899	ENSMUSG00000091476	Gm16432	EG545391|EG666250	predicted gene 16432	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128770775-2	chr2	128770290	128771290	+	936.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 8 of 18)	intron (NM_008587, intron 8 of 18)	-47513.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	7.0	41.0	27.5	25.5	43.5	23.0
Merged-chr1-24461226-4	chr1	24460730	24461730	+	936.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007733, intron 12 of 50)	intron (NM_007733, intron 12 of 50)	126207.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	7.0	12.0	7.5	9.0	23.5	14.0
Merged-chr6-15754016-4	chr6	15753511	15754511	+	936.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	33350.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-95956991-2	chr5	95956491	95957491	+	936.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018866)	promoter-TSS (NM_018866)	52.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96596499-2	chr3	96595999	96596999	+	936.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024851)	promoter-TSS (NM_001024851)	-137.0	NM_001024851	545554.0	Mm.267664	NM_001024851	ENSMUSG00000049097	Ankrd34a	AW060394|Ankrd34	ankyrin repeat domain 34A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120611150-2	chr11	120610650	120611650	+	936.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347615, exon 11 of 13)	exon (NM_001347615, exon 11 of 13)	2673.0	NM_001347616	208990.0	Mm.29444	NM_153288	ENSMUSG00000044034	Npb	PPL7|mPPL7	neuropeptide B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-98382600-2	chr8	98382100	98383100	+	936.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	-629287.0	NR_110579	100873092.0	Mm.414599	NR_110579	ENSMUSG00000089819	Gm15679	-	predicted gene 15679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84910968-2	chr8	84910468	84911468	+	936.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019945)	TTS (NM_019945)	2344.0	NM_010062	13423.0	Mm.350831	NM_010062	ENSMUSG00000003812	Dnase2a	Dnase2	deoxyribonuclease II alpha	protein-coding	0.5	10.0	2.5	0.5	7.5	4.5
Merged-chr15-59524234-4	chr15	59523745	59524745	+	936.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-124409.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54981145-4	chr12	54980656	54981656	+	936.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013815, intron 2 of 26)	MIRb|SINE|MIR	5180.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-123075983-2	chr10	123075483	123076483	+	936.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_153395, exon 1 of 34)	5' UTR (NM_153395, exon 1 of 34)	522.0	NM_001163024	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57105321-4	chr17	57104837	57105837	+	936.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009404)	promoter-TSS (NM_009404)	-48.0	NM_009404	21950.0	Mm.41171	NM_009404	ENSMUSG00000035678	Tnfsf9	4-1BB-L|4-1BBL|AI848817|Cd137l|Ly63l	tumor necrosis factor (ligand) superfamily, member 9	protein-coding	0.5	7.0	2.5	0.5	0.5	3.0
Merged-chr1-74005046-2	chr1	74004546	74005546	+	936.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289895, intron 4 of 32)	intron (NM_001289895, intron 4 of 32)	119401.0	NM_027884	21961.0	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120868591-3	chr9	120868088	120869088	+	936.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46662.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	6.5	0.0	0.0	6.5	0.0	0.0
Merged-chr16-90380028-2	chr16	90379528	90380528	+	936.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-6369.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64313961-2	chr13	64313461	64314461	+	936.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1251.0	NM_025370	66129.0	Mm.491110	NM_025370	ENSMUSG00000021482	Aaed1	1110018J18Rik|AI849003	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding	2.5	0.0	2.5	6.0	14.0	0.0
Merged-chr11-4117497-2	chr11	4116997	4117997	+	936.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144520, intron 1 of 11)	intron (NM_144520, intron 1 of 11)	1232.0	NM_144520	67815.0	Mm.253922	NM_144520	ENSMUSG00000003585	Sec14l2	1300013M05Rik|Spf|TAP	SEC14-like lipid binding 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79248982-1	chr3	79248482	79249482	+	936.0	f1_balb.idr	intron (NR_045502, intron 2 of 2)	intron (NR_045502, intron 2 of 2)	36063.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	14.5	71.5	21.5	23.0	31.5	8.0
Merged-chr7-99981481-2	chr7	99980981	99981981	+	936.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1023.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-13978373-2	chr1	13977873	13978873	+	936.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-191444.0	NR_004447	433273.0	Mm.304088	NR_004447	ENSMUSG00000097711	Gm5523	EG433273	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165015057-3	chr2	165014531	165015531	+	936.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144892, intron 2 of 7)	intron (NM_144892, intron 2 of 7)	19748.0	NM_144892	228869.0	Mm.233080	NM_144892	ENSMUSG00000039804	Ncoa5	CIA	nuclear receptor coactivator 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151616722-4	chr1	151616243	151617243	+	935.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	RMER19B|LTR|ERVK	45370.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102792794-8	chr4	102792212	102793212	+	935.9739380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144906, intron 1 of 23)	intron (NM_144906, intron 1 of 23)	32577.0	NM_001285859	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	4.5	17.0	6.0	8.5	16.0	17.5
Merged-chr7-36698011-4	chr7	36697529	36698529	+	935.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172298)	promoter-TSS (NM_172298)	-89.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	0.0	6.5	6.0	0.0	3.0	3.0
Merged-chr13-59847762-4	chr13	59847261	59848261	+	935.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-24614.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	9.5	5.0	0.5	0.0	7.0	0.0
Merged-chr11-120720635-4	chr11	120720136	120721136	+	935.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133223)	promoter-TSS (NM_133223)	-832.0	NM_133223	170758.0	Mm.34008	NM_133223	ENSMUSG00000018012	Rac3	Rac1B	Rac family small GTPase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88433698-4	chr1	88433209	88434209	+	935.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26699.0	NM_029269	75396.0	Mm.173058	NM_029269	ENSMUSG00000026295	Spp2	0610038O04Rik|pp-24|spp24	secreted phosphoprotein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51328726-4	chr11	51328229	51329229	+	935.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153393, intron 2 of 28)	intron (NM_153393, intron 2 of 28)	38809.0	NM_153393	237759.0	Mm.154093	NM_153393	ENSMUSG00000063564	Col23a1	2810458L13Rik|AI429655	collagen, type XXIII, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-68593593-4	chr14	68593074	68594074	+	935.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11502.0	NM_021475	58860.0	Mm.36742	NM_021475	ENSMUSG00000022057	Adamdec1	2210414L24Rik|AI574231|Dcsn	ADAM-like, decysin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130829451-3	chr4	130828975	130829975	+	935.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36938.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-71261836-3	chr10	71261323	71262323	+	935.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145420, intron 3 of 6)	intron (NM_145420, intron 3 of 6)	23439.0	NM_145420	216080.0	Mm.270530	NM_145420	ENSMUSG00000019927	Ube2d1	UBCH5	ubiquitin-conjugating enzyme E2D 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37479272-4	chr1	37478770	37479770	+	935.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 5 of 15)	L1M4|LINE|L1	9335.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-174171280-4	chr2	174170780	174171780	+	935.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040530, intron 1 of 3)	Lx8|LINE|L1	12638.0	NR_040530	100038374.0	Mm.127249	NR_040530	ENSMUSG00000074555	Gm10714	-	predicted gene 10714	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-6694651-4	chr10	6694168	6695168	+	935.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63925.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	0.0	0.0	5.0	0.0	0.0	0.5
Merged-chr17-81636965-4	chr17	81636468	81637468	+	935.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	101419.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52628740-4	chr13	52628249	52629249	+	935.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 7 of 13)	intron (NM_011518, intron 7 of 13)	31867.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152406758-7	chr3	152406242	152407242	+	935.9206539999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287139, intron 1 of 13)	B1_Mus1|SINE|Alu	10058.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	59.0	94.5	104.5	25.0	59.0	56.5
Merged-chr19-11055840-4	chr19	11055356	11056356	+	935.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-5290.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14228697-4	chr2	14228193	14229193	+	935.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008625)	promoter-TSS (NM_008625)	-721.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-181015679-4	chr1	181015160	181016160	+	935.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010145, intron 1 of 8)	intron (NM_010145, intron 1 of 8)	1909.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101288691-2	chr7	101288191	101289191	+	935.900024	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001111111)	TTS (NM_001111111)	13397.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80565230-4	chr17	80564738	80565738	+	935.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360144, intron 1 of 9)	MMERVK10D3_I-int|LTR|ERVK	-1404.0	NM_001033443	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79347881-3	chr12	79347378	79348378	+	935.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	50527.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-101715876-4	chr2	101715399	101716399	+	935.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001110849, exon 10 of 10)	3' UTR (NM_001110849, exon 10 of 10)	37479.0	NM_001303273	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	0.0	0.5	0.0	1.5	0.0	0.0
Merged-chr5-92256706-4	chr5	92256205	92257205	+	935.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011148)	promoter-TSS (NM_011148)	-427.0	NM_011148	19023.0	Mm.87155	NM_011148	ENSMUSG00000029410	Ppef2	-	protein phosphatase, EF hand calcium-binding domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140502468-4	chr5	140501953	140502953	+	935.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3156.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21175254-4	chr5	21174735	21175735	+	935.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1044.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98103457-3	chr7	98102947	98103947	+	935.833374	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008663, intron 3 of 48)	intron (NM_008663, intron 3 of 48)	5801.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	8.0	28.5	13.5	3.5	3.0	3.5
Merged-chr10-5289520-3	chr10	5289039	5290039	+	935.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347732, exon 55 of 146)	exon (NM_001347732, exon 55 of 146)	-94832.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70512485-4	chr8	70511998	70512998	+	935.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029366)	TTS (NM_029366)	2012.0	NR_151735	78183.0	Mm.297372	NR_151735		4930522P08Rik	-	RIKEN cDNA 4930522P08 gene	ncRNA	2.5	0.0	7.0	3.5	6.5	1.0
Merged-chr10-56174015-4	chr10	56173516	56174516	+	935.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033385, intron 13 of 32)	intron (NM_001033385, intron 13 of 32)	54673.0	NM_001033385	544696.0	Mm.411188	NM_001033385	ENSMUSG00000038122	Tbc1d32	Bromi|C6orf170|D630037F22Rik|b2b2284Clo	TBC1 domain family, member 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-130715266-6	chr3	130714704	130715704	+	935.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5760.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119358909-4	chr13	119358403	119359403	+	935.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308506, intron 12 of 16)	MTD|LTR|ERVL-MaLR	50108.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106174866-3	chr1	106174372	106175372	+	935.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	3003.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34770752-4	chr11	34770281	34771281	+	935.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 1 of 51)	intron (NM_033374, intron 1 of 51)	13124.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81349332-2	chr10	81348832	81349832	+	935.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163165, intron 3 of 9)	intron (NM_001163165, intron 3 of 9)	1094.0	NM_001163165	15353.0	Mm.38474	NM_010440	ENSMUSG00000020232	Hmg20b	AW610687|BRAF35|Hmgx2|Hmgxb2|Smarce1r	high mobility group 20B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87213374-2	chr1	87212874	87213874	+	935.8333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347083)	promoter-TSS (NM_001347083)	-537.0	NM_001347083	26987.0	Mm.227183	NM_023314	ENSMUSG00000026254	Eif4e2	2700069E09Rik|AI036339|AV129531|D0H0S6743E|Eif4el3	eukaryotic translation initiation factor 4E member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7577551-4	chr9	7577042	7578042	+	935.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310717, intron 5 of 9)	intron (NM_001310717, intron 5 of 9)	6146.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80017595-4	chr10	80017099	80018099	+	935.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347074, intron 1 of 22)	intron (NM_001347074, intron 1 of 22)	684.0	NM_001347074	70719.0	Mm.243954	NM_027521	ENSMUSG00000035697	Arhgap45	6330406L22Rik|AW539505|Ha-1|Hmha1	Rho GTPase activating protein 45	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79905588-3	chr11	79905075	79906075	+	935.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	56812.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	0.0	0.0	2.0	0.0	0.0	1.5
Merged-chr19-42714027-3	chr19	42713510	42714510	+	935.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38765.0	NM_029011	74580.0	Mm.329858	NM_029011	ENSMUSG00000060224	Pyroxd2	3830409H07Rik|4833409A17Rik	pyridine nucleotide-disulphide oxidoreductase domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77543352-4	chr10	77542859	77543859	+	935.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 3 of 15)	MTE2b|LTR|ERVL-MaLR	13011.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-96209471-2	chr5	96208971	96209971	+	935.7999880000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053158)	promoter-TSS (NM_053158)	-644.0	NM_001039084	94061.0	Mm.295499	NM_053158	ENSMUSG00000029486	Mrpl1	2410002L03Rik|5830418D04Rik|AI462572|L1mt	mitochondrial ribosomal protein L1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92370583-4	chr5	92370094	92371094	+	935.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-7298.0	NR_038116	56066.0	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	1.5	22.5	7.5	6.5	26.5	12.0
Merged-chr9-120028037-4	chr9	120027554	120028554	+	935.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4456.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	0.0	13.0	19.0	5.0	15.5	15.0
Merged-chr14-46179218-3	chr14	46178712	46179712	+	935.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95185.0	NR_002875	218963.0	Mm.282093	NR_002875		Gm1821	-	ubiquitin pseudogene	pseudo	10.5	9.0	3.5	22.0	35.0	21.5
Merged-chr7-12881752-3	chr7	12881187	12882187	+	935.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153802, intron 1 of 3)	intron (NM_153802, intron 1 of 3)	509.0	NM_153802	243833.0	Mm.293823	NM_153802	ENSMUSG00000060397	Zfp128	9630016P15Rik|Znf8|mZnf8	zinc finger protein 128	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-190169518-3	chr1	190168993	190169993	+	935.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360827)	promoter-TSS (NM_001360827)	22.0	NM_001360827	19130.0	Mm.132579	NM_008937	ENSMUSG00000010175	Prox1	A230003G05Rik|PROX-1	prospero homeobox 1	protein-coding	1.0	0.0	0.5	0.0	0.0	0.0
Merged-chr4-40721016-3	chr4	40720487	40721487	+	935.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_077221, exon 3 of 3)	non-coding (NR_077221, exon 3 of 3)	1330.0	NR_077221	622208.0	Mm.471544	NR_077221		Gm6297	-	predicted gene 6297	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109335674-4	chr3	109335197	109336197	+	935.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-4986.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	4.0	2.0	1.0	5.0	0.0	7.5
Merged-chr7-24978943-4	chr7	24978436	24979436	+	935.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290469, exon 22 of 23)	exon (NM_001290469, exon 22 of 23)	-6208.0	NM_010261	14470.0	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111821935-3	chr13	111821430	111822430	+	935.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-12937.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	2.0	11.0	0.0	0.0	5.0	0.0
Merged-chr11-115073878-2	chr11	115073378	115074378	+	935.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11839.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67769843-4	chr18	67769337	67770337	+	935.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-5039.0	NM_001360934	72124.0	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	15.5	59.0	45.0	7.0	45.0	16.5
Merged-chr10-78462449-2	chr10	78461949	78462949	+	935.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172134, intron 1 of 10)	RMER1B|Other|Other	2499.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127381144-4	chr10	127380672	127381672	+	935.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359244, intron 1 of 25)	intron (NM_001359244, intron 1 of 25)	504.0	NM_001359244	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	26.5	57.0	43.5	31.0	31.5	41.5
Merged-chr5-23114402-4	chr5	23113891	23114891	+	935.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029990, intron 2 of 2)	intron (NM_029990, intron 2 of 2)	319962.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	2.5	30.5	8.5	14.0	41.0	21.5
Merged-chr17-8901659-4	chr17	8901173	8902173	+	935.7374880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347321, intron 2 of 21)	MTC|LTR|ERVL-MaLR	51688.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47784604-4	chr17	47784088	47785088	+	935.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-1156.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85985925-4	chr1	85985426	85986426	+	935.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24871.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-21186790-7	chr2	21186282	21187282	+	935.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027728, intron 4 of 4)	intron (NM_027728, intron 4 of 4)	18583.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122534804-5	chr10	122534281	122535281	+	935.711121	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35110.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	4.0	4.0	6.0	10.0	15.5	5.0
Merged-chr14-31458703-4	chr14	31458188	31459188	+	935.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22588.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62576004-4	chr11	62575476	62576476	+	935.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011706, exon 2 of 16)	5' UTR (NM_011706, exon 2 of 16)	1490.0	NM_011706	22368.0	Mm.288064	NM_011706	ENSMUSG00000018507	Trpv2	GRC|OTRPC2|VRL-1|Vrl1	transient receptor potential cation channel, subfamily V, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-118136237-4	chr4	118135742	118136742	+	935.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001161823)	TTS (NM_001161823)	-1296.0	NM_001161774	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3442845-4	chr7	3442342	3443342	+	935.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18180.0	NM_133183	54378.0	Mm.424047	NM_133183	ENSMUSG00000078815	Cacng6	2310033H20Rik	calcium channel, voltage-dependent, gamma subunit 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-69537571-4	chr18	69537041	69538041	+	935.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 6 of 19)	intron (NM_001361128, intron 6 of 19)	191381.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64961774-3	chr5	64961276	64962276	+	935.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1680.0	NM_011604	21899.0	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	23.0	95.0	40.0	10.5	79.5	34.0
Merged-chr1-160792316-3	chr1	160791738	160792738	+	935.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013862, intron 1 of 20)	CpG	700.0	NM_013862	29809.0	Mm.25833	NM_013862	ENSMUSG00000026721	Rabgap1l	5830411O09Rik|8430421H08Rik|9630005B12Rik|AW049894|HHL|Hh1|mKIAA0471	RAB GTPase activating protein 1-like	protein-coding	0.0	0.0	1.0	0.0	0.0	2.0
Merged-chr7-79935183-3	chr7	79934681	79935681	+	935.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027420)	promoter-TSS (NM_027420)	83.0	NM_027420	70420.0	Mm.34266	NM_027420	ENSMUSG00000039043	Arpin	2610034B18Rik	actin-related protein 2/3 complex inhibitor	protein-coding	3.5	9.5	5.0	4.0	6.0	0.5
Merged-chr19-53265807-3	chr19	53265306	53266306	+	935.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10601.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118662218-3	chr14	118661725	118662725	+	935.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033336, intron 3 of 30)	intron (NM_001033336, intron 3 of 30)	14706.0	NM_001163675	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	0.0	0.0	10.0	0.0	0.0	9.5
Merged-chr13-111789630-7	chr13	111789123	111790123	+	935.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	19370.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118998778-3	chr11	118998282	118999282	+	935.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10601.0	NM_001359574	238011.0	Mm.244114	NM_001030291	ENSMUSG00000046697	Enpp7	Alk-SMase|Gm254	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46876133-4	chr8	46875636	46876636	+	935.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110751.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3607810-3	chr4	3607310	3608310	+	935.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054089, intron 12 of 12)	intron (NM_054089, intron 12 of 12)	32931.0	NM_054089	116940.0	Mm.171323	NM_054089	ENSMUSG00000028233	Tgs1	D4Ertd800e|Ncoa6ip|Pimt	trimethylguanosine synthase 1	protein-coding	17.5	27.5	25.0	16.0	31.0	29.5
Merged-chr5-135015677-3	chr5	135015176	135016176	+	935.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2519.0	NR_026688	69812.0	Mm.18422	NR_026688	ENSMUSG00000085042	Abhd11os	2010001M06Rik|AI462243|Wbscr26|Wnscr26	abhydrolase domain containing 11, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108474769-3	chr9	108474283	108475283	+	935.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5079.0	NM_008483	16779.0	Mm.27560	NM_008483	ENSMUSG00000052911	Lamb2	AW211941|Lamb-2|Lams|npht	laminin, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145747316-4	chr6	145746772	145747772	+	935.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-61111.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	1.5	2.5	5.0	0.5	2.5	4.0
Merged-chr16-90726893-1	chr16	90726393	90727393	+	935.6666869999999	f0_balb.idr	intron (NM_025642, intron 1 of 4)	intron (NM_025642, intron 1 of 4)	478.0	NM_025642	66578.0	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67437665-3	chr5	67437160	67438160	+	935.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9861.0	NM_001164806	666938.0	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	0.0	0.0	0.0	0.0	1.5	2.0
Merged-chr1-153754844-3	chr1	153754338	153755338	+	935.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011882, exon 4 of 9)	exon (NM_011882, exon 4 of 9)	5412.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-97667482-3	chr1	97666980	97667980	+	935.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31_Mm|LTR|ERVK	-5462.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52442259-3	chr6	52441764	52442764	+	935.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50187.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115601279-4	chr11	115600684	115601684	+	935.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173048, intron 1 of 16)	intron (NM_173048, intron 1 of 16)	2732.0	NM_001252067	260302.0	Mm.119479	NM_173048	ENSMUSG00000020740	Gga3	C230037M19Rik|mKIAA0154	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding	35.0	46.0	56.0	45.5	68.5	64.5
Merged-chr17-45119992-4	chr17	45119503	45120503	+	935.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357320)	TTS (NM_001357320)	-239118.0	NM_029257	75341.0	Mm.386821	NM_029257		4930564C03Rik	-	RIKEN cDNA 4930564C03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43110724-4	chr1	43110216	43111216	+	935.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133818, intron 2 of 3)	ORR1D2|LTR|ERVL-MaLR	12006.0	NM_133818	98404.0	Mm.28817	NM_133818	ENSMUSG00000010290	AI597479	-	expressed sequence AI597479	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64797423-4	chr1	64796916	64797916	+	935.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 7 of 7)	intron (NM_001039493, intron 7 of 7)	-59666.0	NM_022721	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67113534-4	chr10	67113036	67114036	+	935.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13722.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-104041208-4	chr13	104040714	104041714	+	935.6166380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029447, intron 9 of 12)	intron (NM_029447, intron 9 of 12)	68400.0	NM_029447	75805.0	Mm.127692	NM_029447	ENSMUSG00000021710	Nln	4930472G13Rik|C79345	neurolysin (metallopeptidase M3 family)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4230613-4	chr19	4230117	4231117	+	935.6124880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132308, intron 2 of 3)	intron (NR_132308, intron 2 of 3)	-1276.0	NM_027196	69745.0	Mm.32518	NM_027196	ENSMUSG00000024854	Pold4	2410012M21Rik|AI463381|AW060307|Polds|p12	polymerase (DNA-directed), delta 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-83821982-3	chr3	83821484	83822484	+	935.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	19624.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	16.0	0.0	0.0	4.0	0.5	0.0
Merged-chr11-95354301-4	chr11	95353812	95354812	+	935.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172543, intron 1 of 7)	intron (NM_172543, intron 1 of 7)	17294.0	NM_172543	215512.0	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99154381-3	chr12	99153888	99154888	+	935.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8420.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95795698-3	chr10	95795208	95796208	+	935.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-144955.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-86631317-4	chr9	86630808	86631808	+	935.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008615, intron 6 of 13)	intron (NM_008615, intron 6 of 13)	55969.0	NM_001198933	17436.0	Mm.148155	NM_008615	ENSMUSG00000032418	Me1	D9Ertd267e|Mdh-1|Mod-1|Mod1	malic enzyme 1, NADP(+)-dependent, cytosolic	protein-coding	3.0	0.0	0.0	1.5	2.0	0.0
Merged-chr12-103325689-4	chr12	103325166	103326166	+	935.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 7 of 9)	CpG	10707.0	NM_001195726	100504156.0	Mm.425749	NM_001195726	ENSMUSG00000096753	Fam181a	EG544888	family with sequence similarity 181, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55832243-4	chr16	55831751	55832751	+	935.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030612, intron 2 of 13)	intron (NM_030612, intron 2 of 13)	6390.0	NM_030612	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27298459-4	chr3	27297962	27298962	+	935.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18615.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-52043421-4	chr11	52042926	52043926	+	935.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166654, intron 13 of 13)	intron (NM_001166654, intron 13 of 13)	39205.0	NM_001166653	213084.0	Mm.280557	NM_153785	ENSMUSG00000020389	Cdkl3	AI852479|B230379H01Rik	cyclin-dependent kinase-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-14846891-4	chr9	14846365	14847365	+	935.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13345.0	NM_001310734	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101553783-4	chr11	101553285	101554285	+	935.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008676, intron 1 of 23)	intron (NM_008676, intron 1 of 23)	1131.0	NM_001252223	17966.0	Mm.784	NM_008676	ENSMUSG00000017119	Nbr1	mKIAA0049	neighbor of Brca1 gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-114139976-3	chr2	114139490	114140490	+	935.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290788, intron 16 of 33)	intron (NM_001290788, intron 16 of 33)	10580.0	NR_105968	102465982.0		NR_105968	ENSMUSG00000098464	Mir7002	Gm27429|mmu-mir-7002	microRNA 7002	ncRNA	0.0	2.0	0.0	0.0	3.5	0.0
Merged-chr9-22117696-3	chr9	22117220	22118220	+	935.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357309)	promoter-TSS (NM_001357309)	-525.0	NM_001357312	66126.0	Mm.29801	NM_170777	ENSMUSG00000013822	Elof1	1110011K10Rik	ELF1 homolog, elongation factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-36183930-4	chr4	36183441	36184441	+	935.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166000, intron 4 of 8)	intron (NM_001166000, intron 4 of 8)	-338737.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	1.0	0.0	0.5	1.0	0.0	0.5
Merged-chr8-85082286-4	chr8	85081778	85082778	+	935.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010764)	promoter-TSS (NM_010764)	-991.0	NM_010764	17159.0	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	22.0	125.5	45.0	24.5	56.5	47.5
Merged-chr12-55465738-4	chr12	55465239	55466239	+	935.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26908.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8881299-6	chr10	8880766	8881766	+	935.5277710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	4804.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59645462-4	chr2	59644960	59645960	+	935.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198294, intron 1 of 26)	intron (NM_198294, intron 1 of 26)	-1309.0	NM_001290659	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95848110-3	chr13	95847613	95848613	+	935.511108	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	Lx8|LINE|L1	43809.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	34.5	85.5	54.5	8.0	24.0	23.5
Merged-chr5-140619554-4	chr5	140619038	140620038	+	935.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12197.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167692152-5	chr2	167691744	167692744	+	935.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015500, intron 1 of 1)	intron (NR_015500, intron 1 of 1)	1067.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-86890787-2	chr5	86890287	86891287	+	935.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153598, exon 6 of 6)	3' UTR (NM_153598, exon 6 of 6)	16150.0	NM_153598	100727.0	Mm.281844	NM_153598	ENSMUSG00000029260	Ugt2b34	AI788959	UDP glucuronosyltransferase 2 family, polypeptide B34	protein-coding	2.0	6.5	0.0	0.0	1.5	0.0
Merged-chr1-74206672-2	chr1	74206172	74207172	+	935.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035449)	promoter-TSS (NR_035449)	-52.0	NR_035449	100316687.0		NR_035449	ENSMUSG00000087820	Mir1928	mmu-mir-1928	microRNA 1928	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83790218-2	chr17	83789718	83790718	+	935.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 12 of 16)	RLTR28|LTR|ERVL	56572.0	NM_025325	107766.0	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127612218-2	chr10	127611718	127612718	+	935.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 2 of 88)	intron (NM_008512, intron 2 of 88)	8930.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61919304-2	chr8	61918804	61919804	+	935.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8783.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0.0	0.5	0.0	0.0	5.5	3.5
Merged-chr7-100232878-2	chr7	100232378	100233378	+	935.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027629, intron 1 of 13)	intron (NM_027629, intron 1 of 13)	5271.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44983292-4	chr7	44982793	44983793	+	935.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252476, intron 2 of 9)	intron (NM_001252476, intron 2 of 9)	3127.0	NM_001252476	15469.0	Mm.27545	NM_019830	ENSMUSG00000109324	Prmt1	6720434D09Rik|AW214366|Hrmt1l2|Mrmt1	protein arginine N-methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-39039012-3	chr12	39038505	39039505	+	935.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	255294.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163607910-2	chr2	163607380	163608380	+	935.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_131225, intron 2 of 3)	ID_B1|SINE|B4	668.0	NM_001305803	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	3.5	0.0	0.0	0.0	1.0	1.0
Merged-chr2-25197274-2	chr2	25196774	25197774	+	935.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146115)	promoter-TSS (NM_146115)	-461.0	NM_146115	227612.0	Mm.119747	NM_146115	ENSMUSG00000059555	Tor4a	A830007P12Rik	torsin family 4, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-23651525-3	chr9	23651031	23652031	+	935.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	428455.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79401652-2	chr15	79401152	79402152	+	935.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172608, intron 1 of 8)	L2b|LINE|L2	1267.0	NM_001253817	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	0.0	0.0	0.5	0.0	3.0	2.5
Merged-chr10-83362028-2	chr10	83361528	83362528	+	935.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026579, intron 1 of 3)	intron (NM_026579, intron 1 of 3)	1807.0	NM_026579	28109.0	Mm.196210	NM_026579	ENSMUSG00000020255	D10Wsu102e	AI747614|C430041I18Rik	DNA segment, Chr 10, Wayne State University 102, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117233424-4	chr8	117232929	117233929	+	935.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-23590.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66178496-2	chr14	66177996	66178996	+	935.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 7 of 30)	intron (NM_001162366, intron 7 of 30)	35328.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127574887-2	chr10	127574387	127575387	+	935.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 26 of 88)	intron (NM_008512, intron 26 of 88)	-40328.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.0	9.0	1.5	0.5	1.0	1.5
Merged-chr7-66197342-2	chr7	66196842	66197842	+	935.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87827.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99993232-2	chr12	99992732	99993732	+	935.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	28733.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112990625-3	chr13	112990115	112991115	+	935.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081062, exon 3 of 3)	3' UTR (NM_001081062, exon 3 of 3)	2813.0	NM_001081062	218630.0	Mm.25457	NM_001081062	ENSMUSG00000042417	Ccno	C86987|Ccnu|E130318K11|UDG2|Ung2	cyclin O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88268899-3	chr1	88268427	88269427	+	935.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172505, intron 3 of 4)	intron (NM_172505, intron 3 of 4)	481.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180871391-2	chr1	180870891	180871891	+	935.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	20240.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59265398-2	chr4	59264898	59265898	+	935.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_105031, intron 3 of 3)	intron (NR_105031, intron 3 of 3)	5347.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	6.0	14.5	17.5	5.5	25.0	15.5
Merged-chr19-4306409-4	chr19	4305899	4306899	+	935.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130863)	promoter-TSS (NM_130863)	-177.0	NM_001290818	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	12.0	0.0	2.5	2.0	0.0	2.5
Merged-chr19-10277405-4	chr19	10276769	10277769	+	935.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	27608.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-104367117-4	chr11	104366587	104367587	+	935.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 5 of 14)	ID_B1|SINE|B4	75204.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126848853-3	chr8	126848369	126849369	+	935.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151740)	promoter-TSS (NR_151740)	-151.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-71159967-3	chr11	71159466	71160466	+	935.43335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040696, intron 12 of 14)	intron (NM_001040696, intron 12 of 14)	-15262.0	NM_001004142	195046.0	Mm.240227	NM_001004142	ENSMUSG00000069830	Nlrp1a	CARD7|DEFCAP|Gm14|Gm15|NAC|Nalp1|Nalp1a|Nlrp1|PP1044	NLR family, pyrin domain containing 1A	protein-coding	1.0	43.5	24.5	37.0	41.5	23.5
Merged-chr4-129987894-4	chr4	129987417	129988417	+	935.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199696, intron 1 of 28)	CpG	2839.0	NM_173071	230775.0	Mm.262241	NM_173071	ENSMUSG00000028782	Adgrb2	Bai2	adhesion G protein-coupled receptor B2	protein-coding	6.0	0.0	1.0	0.0	1.5	0.0
Merged-chr2-112255333-4	chr2	112254828	112255828	+	935.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172521, intron 2 of 6)	intron (NM_172521, intron 2 of 6)	3963.0	NM_172521	213765.0	Mm.78965	NM_172521	ENSMUSG00000041358	Nutm1	4932438M10|Nut	NUT midline carcinoma, family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-132064166-4	chr3	132063668	132064668	+	935.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21124.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0.0	12.0	5.5	7.5	8.0	0.0
Merged-chr6-72379643-4	chr6	72379190	72380190	+	935.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016872, intron 1 of 2)	intron (NM_016872, intron 1 of 2)	778.0	NM_001080742	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8691761-6	chr4	8691348	8692348	+	935.4027710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277149, intron 1 of 37)	CpG	1442.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-48639391-2	chr2	48638891	48639891	+	935.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-174718.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126504674-2	chr7	126504174	126505174	+	935.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1237.0	NM_183020	233871.0	Mm.231450	NM_183020	ENSMUSG00000032637	Atxn2l	A2D|A2LG|A2RP|A2lp|Atxnl2	ataxin 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30613670-3	chr7	30613135	30614135	+	935.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026815)	promoter-TSS (NM_026815)	-901.0	NM_026815	109637.0	Mm.25471	NM_026815	ENSMUSG00000006313	Upk1a	1110031P12Rik|AU019298|C87192|Tspan21|Upk1	uroplakin 1A	protein-coding	0.0	0.0	0.0	8.5	0.0	0.5
Merged-chr14-61683742-6	chr14	61683166	61684166	+	935.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1293.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41304520-3	chr4	41304026	41305026	+	935.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026893, intron 2 of 8)	intron (NM_026893, intron 2 of 8)	10375.0	NM_026893	68970.0	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91846617-4	chr16	91846098	91847098	+	935.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 19 of 28)	intron (NM_001110275, intron 19 of 28)	85032.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36111745-4	chr17	36111246	36112246	+	935.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271005)	promoter-TSS (NM_001271005)	-70.0	NM_001271005	667803.0	Mm.477808	NM_001271005		H2-T-ps	C920025E04Rik|H2-T11	histocompatibility 2, T region locus, pseudogene	protein-coding	2.5	5.0	1.5	2.5	3.0	1.5
Merged-chr4-139587535-4	chr4	139587037	139588037	+	935.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	12817.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	19.5	16.0	15.0	4.0	12.5	5.0
Merged-chr2-73047190-4	chr2	73046675	73047675	+	935.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66729.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24323593-4	chr13	24323078	24324078	+	935.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3826.0	NM_001284519	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-45439394-4	chr8	45438911	45439911	+	935.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28792.0	NM_126166	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-36132249-5	chr13	36131839	36132839	+	935.339417	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 1 of 5)	intron (NM_001039189, intron 1 of 5)	14696.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	6.5	38.5	14.0	1.5	33.5	23.5
Merged-chr19-47356635-3	chr19	47356114	47357114	+	935.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 5 of 14)	intron (NM_008018, intron 5 of 14)	-83025.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	0.0	3.0	4.5	4.5	12.0	3.5
Merged-chr7-19221573-3	chr7	19221046	19222046	+	935.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175668, exon 2 of 2)	5' UTR (NM_175668, exon 2 of 2)	-6843.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	6.0	14.5	3.5	5.5	0.5	1.5
Merged-chr18-67133646-3	chr18	67133062	67134062	+	935.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010307)	promoter-TSS (NM_010307)	2.0	NM_010307	14680.0	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165682161-4	chr1	165681639	165682639	+	935.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	25955.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27667990-4	chr2	27667474	27668474	+	935.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9227.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97059830-4	chr15	97059329	97060329	+	935.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3873.0	NM_027052	69354.0	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156534136-4	chr1	156533601	156534601	+	935.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-24686.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	19.5	39.0	21.0	55.5	104.5	91.5
Merged-chr11-54755672-3	chr11	54755087	54756087	+	935.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178626, intron 2 of 5)	intron (NM_178626, intron 2 of 5)	32116.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-85346389-4	chr6	85345897	85346897	+	935.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003955, intron 3 of 5)	intron (NM_001003955, intron 3 of 5)	-10024.0	NR_030486	735267.0		NR_030486	ENSMUSG00000076012	Mir705	Mirn705|mmu-mir-705	microRNA 705	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124924480-1	chr8	124923980	124924980	+	935.3333130000001	f0_balb.idr	intron (NM_053207, intron 1 of 4)	MIRc|SINE|MIR	24774.0	NM_053207	112405.0	Mm.140619	NM_053207	ENSMUSG00000031987	Egln1	AI503754|C1orf12|HIF-PH2|HPH-2|Hif-p4h-2|ORF13|Phd2|SM-20	egl-9 family hypoxia-inducible factor 1	protein-coding	1.5	1.0	1.5	4.0	14.0	13.5
Merged-chr2-32009011-3	chr2	32008513	32009513	+	935.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172268, intron 18 of 35)	intron (NM_172268, intron 18 of 35)	34563.0	NM_172268	227720.0	Mm.289686	NM_172268	ENSMUSG00000001855	Nup214	BC039282|CAN|D2H9S46E	nucleoporin 214	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65931467-3	chr5	65930974	65931974	+	935.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35650.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77725732-3	chr9	77725231	77726231	+	935.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-28804.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	34.0	37.0	25.0	12.5	10.5	13.0
Merged-chr10-77523305-4	chr10	77522812	77523812	+	935.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7036.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76406479-4	chr16	76405977	76406977	+	935.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32650.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34172980-5	chr10	34172482	34173482	+	935.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 2 of 5)	intron (NM_172508, intron 2 of 5)	34569.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34741974-4	chr2	34741470	34742470	+	935.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151469, intron 2 of 26)	intron (NR_151469, intron 2 of 26)	13262.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106666832-4	chr11	106666307	106667307	+	935.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 13 of 14)	intron (NM_001305158, intron 13 of 14)	48474.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0.0	1.5	0.0	0.0	0.0	5.5
Merged-chr16-97954448-4	chr16	97953968	97954968	+	935.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001320385, intron 1 of 2)	intron (NM_001320385, intron 1 of 2)	8154.0	NM_001081685	114565.0	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding	0.0	1.5	7.0	1.5	20.5	10.5
Merged-chr10-82818137-4	chr10	82817515	82818515	+	935.267822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038042, intron 1 of 2)	B1F2|SINE|Alu	5892.0	NR_038042	70003.0	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	2.0	11.5	13.0	8.5	16.0	16.5
Merged-chr1-58860866-4	chr1	58860356	58861356	+	935.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58354.0	NM_001277926	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99546404-4	chr7	99545922	99546922	+	935.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178220, intron 1 of 14)	intron (NM_178220, intron 1 of 14)	-5847.0	NR_029760	723840.0		NR_029760	ENSMUSG00000065571	Mir326	Mirn326|mir-326|mmu-mir-326	microRNA 326	ncRNA	43.5	78.5	69.0	24.0	53.5	65.0
Merged-chr3-121293381-4	chr3	121292857	121293857	+	935.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155539, intron 1 of 2)	intron (NR_155539, intron 1 of 2)	1617.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	7.0	0.0	0.5	0.0	0.0	2.0
Merged-chr2-118700345-4	chr2	118699853	118700853	+	935.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081971, exon 1 of 1)	3' UTR (NM_001081971, exon 1 of 1)	3610.0	NM_001081971	383787.0	Mm.35758	NM_001081971	ENSMUSG00000078137	Ankrd63	Gm1337	ankyrin repeat domain 63	protein-coding	0.0	3.5	0.5	0.0	1.0	1.5
Merged-chr1-134063027-2	chr1	134062527	134063527	+	935.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16128.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127129844-4	chr7	127129343	127130343	+	935.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7814.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92254695-4	chr5	92254197	92255197	+	935.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011148, intron 1 of 16)	intron (NM_011148, intron 1 of 16)	1581.0	NM_011148	19023.0	Mm.87155	NM_011148	ENSMUSG00000029410	Ppef2	-	protein phosphatase, EF hand calcium-binding domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118485089-4	chr7	118484539	118485539	+	935.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033380)	TTS (NM_001033380)	6936.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	150.0	215.0	218.0	173.5	251.0	213.5
Merged-chr17-48167273-4	chr17	48166767	48167767	+	935.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113556)	promoter-TSS (NM_001113556)	-10.0	NM_178796	328830.0	Mm.470939	NM_178796	ENSMUSG00000043939	A530064D06Rik	Trem4|pdctrem	RIKEN cDNA A530064D06 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-72779521-4	chr11	72778993	72779993	+	935.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024926, intron 3 of 3)	intron (NM_001024926, intron 3 of 3)	16346.0	NM_001024926	192986.0	Mm.194755	NM_001024926	ENSMUSG00000057778	Cyb5d2	9330151E16Rik|Gm2	cytochrome b5 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78989152-4	chr17	78988651	78989651	+	935.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171004, intron 2 of 18)	intron (NM_001171004, intron 2 of 18)	19354.0	NM_001171005	75292.0	Mm.252776	NM_029239	ENSMUSG00000024070	Prkd3	4930557O20Rik|5730497N19Rik|PKD3|Pkcnu|Prkcn	protein kinase D3	protein-coding	3.5	7.0	2.5	3.5	6.0	6.5
Merged-chr5-136007999-3	chr5	136007479	136008479	+	935.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256096, intron 2 of 10)	ZP3AR|Satellite|Satellite	13179.0	NM_001256098	74198.0	Mm.275574	NM_023742	ENSMUSG00000004947	Dtx2	2610524D08Rik|AA408415|AU022494|Deltex2	deltex 2, E3 ubiquitin ligase	protein-coding	0.0	0.0	0.0	3.0	4.5	2.0
Merged-chr16-11000633-3	chr16	11000127	11001127	+	935.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7506.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	48.0	102.0	52.0	82.5	188.0	90.5
Merged-chr17-56808729-4	chr17	56808222	56809222	+	935.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009056, intron 1 of 16)	intron (NM_009056, intron 1 of 16)	22286.0	NM_009056	19725.0	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121505452-4	chr10	121504950	121505950	+	935.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29200.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	46.5	59.0	65.5	10.5	27.5	28.5
Merged-chr4-130784960-4	chr4	130784467	130785467	+	935.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7570.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152808406-4	chr1	152807944	152808944	+	935.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 2 of 15)	intron (NM_010877, intron 2 of 15)	8291.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113479441-4	chr13	113478923	113479923	+	935.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 3 of 6)	intron (NR_045501, intron 3 of 6)	23421.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78429417-3	chr10	78428904	78429904	+	935.177795	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3734.0	NM_007793	13014.0	Mm.6095	NM_007793	ENSMUSG00000005054	Cstb	AA960480|Stfb	cystatin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84186762-4	chr8	84186292	84187292	+	935.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7831.0	NR_029821	723819.0		NR_029821	ENSMUSG00000065483	Mir181c	Mirn181c|mir-181c	microRNA 181c	ncRNA	37.0	103.0	35.5	15.5	81.0	41.5
Merged-chr13-34282261-3	chr13	34281759	34282759	+	935.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	62923.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122292663-3	chr14	122292179	122293179	+	935.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029556, intron 1 of 7)	intron (NM_029556, intron 1 of 7)	-59041.0	NR_015532	68245.0	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34026271-2	chr17	34025773	34026773	+	935.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_013543, intron 8 of 8)	intron (NM_013543, intron 8 of 8)	-1181.0	NR_029800	723823.0		NR_029800	ENSMUSG00000065555	Mir219a-1	Mir219-1|Mirn219-1|mir-219a-1|mmu-mir-219a-1	microRNA 219a-1	ncRNA	0.0	0.5	0.0	1.5	3.0	3.5
Merged-chr3-27616612-3	chr3	27616085	27617085	+	935.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 4 of 26)	intron (NM_001356953, intron 4 of 26)	-31590.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101061419-3	chr7	101060867	101061867	+	935.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47408.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	4.5	14.0	11.0	20.5	37.0	23.0
Merged-chr2-167769175-2	chr2	167768675	167769675	+	935.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	77998.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	2.0	12.0	0.0	6.0	6.5
Merged-chr2-128377923-4	chr2	128377425	128378425	+	935.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	51426.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	6.0	39.0	29.0	22.5	60.0	16.0
Merged-chr10-117412244-2	chr10	117411744	117412744	+	935.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	35191.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	10.5	36.0	29.5	13.0	14.0	26.0
Merged-chr2-38221180-2	chr2	38220680	38221680	+	935.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146122, intron 2 of 21)	intron (NM_146122, intron 2 of 21)	66204.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25553396-2	chr2	25552896	25553896	+	935.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	-4504.0	NM_021519	59022.0	Mm.29945	NM_021519	ENSMUSG00000015092	Edf1	0610008L11Rik|AA409425	endothelial differentiation-related factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21389286-4	chr16	21388780	21389780	+	935.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-33838.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77623144-5	chr10	77622543	77623543	+	935.159973	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019803, intron 1 of 5)	intron (NM_019803, intron 1 of 5)	722.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72601254-4	chr5	72600763	72601763	+	935.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31_Mur|LTR|ERVK	-13713.0	NM_001024147	545758.0	Mm.332426	NM_001024147	ENSMUSG00000060204	Gm5868	EG545758	predicted gene 5868	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33430946-2	chr2	33430446	33431446	+	935.142822	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085507, intron 1 of 2)	CpG	378.0	NM_001085507	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58669864-4	chr1	58669337	58670337	+	935.1375119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347056, intron 7 of 13)	intron (NM_001347056, intron 7 of 13)	17196.0	NR_045007	100504501.0	Mm.440933	NR_045007	ENSMUSG00000102059	Gm20257	-	caspase 8 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49909670-4	chr16	49909136	49910136	+	935.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 9 of 9)	intron (NM_010581, intron 9 of 9)	-46194.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132555777-4	chr4	132555276	132556276	+	935.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8291.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23521929-3	chr13	23521428	23522428	+	935.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Ser-AGY|tRNA|tRNA	-9116.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	0.0	0.0	3.5	0.0	0.0	0.5
Merged-chr3-69185329-3	chr3	69184821	69185821	+	935.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37098.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4138132-4	chr19	4137643	4138643	+	935.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144532, intron 3 of 5)	MTD|LTR|ERVL-MaLR	1466.0	NM_144532	73660.0	Mm.379226	NM_144532	ENSMUSG00000024842	Cabp4	2410038D05Rik	calcium binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23747028-4	chr17	23746536	23747536	+	935.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1207.0	NM_028416	73016.0	Mm.221319	NM_028416	ENSMUSG00000040680	Kremen2	2900054E04Rik|Krm2	kringle containing transmembrane protein 2	protein-coding	0.0	13.0	6.0	1.0	4.0	3.0
Merged-chr1-186584051-4	chr1	186583541	186584541	+	935.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25360.0	NR_131158	320449.0	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-23149510-6	chr8	23149054	23150054	+	935.074402	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282148)	promoter-TSS (NM_001282148)	31.0	NM_001282148	101056408.0	Mm.475778	NM_001282148		Gm15816	-	predicted gene 15816	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7418068-4	chr19	7417570	7418570	+	935.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175381, intron 1 of 4)	CpG	445.0	NM_175381	108899.0	Mm.386838	NM_175381	ENSMUSG00000053080	2700081O15Rik	AI255177|AI848741|AW742297	RIKEN cDNA 2700081O15 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-31808120-4	chr11	31807654	31808654	+	935.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102312, intron 1 of 4)	intron (NR_102312, intron 1 of 4)	16393.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	9.0	12.5	8.0	5.0	16.0	10.0
Merged-chr16-24603554-4	chr16	24603054	24604054	+	935.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 4 of 12)	intron (NM_178665, intron 4 of 12)	74240.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79087397-4	chr2	79086866	79087866	+	935.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-168060.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5865465-4	chr13	5864946	5865946	+	935.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011803, intron 2 of 3)	intron (NM_011803, intron 2 of 3)	3957.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77805869-4	chr15	77805448	77806448	+	935.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 3 of 40)	intron (NM_022410, intron 3 of 40)	36227.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64369051-6	chr13	64368450	64369450	+	935.0277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009984, intron 2 of 7)	intron (NM_009984, intron 2 of 7)	1570.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	23.5	69.5	22.0	7.0	74.5	39.0
Merged-chr13-91515126-3	chr13	91514617	91515617	+	935.0277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 1 of 15)	intron (NM_001360776, intron 1 of 15)	54020.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	0.0	0.0	2.5	0.0	18.5	1.0
Merged-chr4-156033681-4	chr4	156033234	156034234	+	935.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7412.0	NM_021985	21936.0	Mm.3180	NM_009400	ENSMUSG00000041954	Tnfrsf18	AITR|Gitr	tumor necrosis factor receptor superfamily, member 18	protein-coding	0.0	7.0	4.5	0.0	6.0	4.0
Merged-chr11-115676933-4	chr11	115676424	115677424	+	935.0125119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	22610.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31352753-3	chr15	31352255	31353255	+	935.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027496, intron 1 of 3)	MLT2C2|LTR|ERVL	15004.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98862412-2	chr11	98861912	98862912	+	935.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-1186.0	NM_197940	68524.0	Mm.28661	NM_197940	ENSMUSG00000038013	Wipf2	1110014J05Rik|5730509C05Rik|AA407487|Gm1176|Wich|Wire	WAS/WASL interacting protein family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-114728680-2	chr9	114728180	114729180	+	935.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID|SINE|ID	-2523.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31403215-3	chr3	31402690	31403690	+	935.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92871.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-28514117-2	chr16	28513617	28514617	+	935.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010199, intron 2 of 5)	intron (NM_010199, intron 2 of 5)	50378.0	NM_001357064	14167.0	Mm.7996	NM_010199	ENSMUSG00000022523	Fgf12	AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1	fibroblast growth factor 12	protein-coding	0.0	2.0	0.0	2.0	0.0	1.0
Merged-chr2-59203569-2	chr2	59203069	59204069	+	935.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	42719.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127185773-2	chr7	127185273	127186273	+	935.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10304.0	NM_001285907	70233.0	Mm.28050	NM_027353	ENSMUSG00000042502	Cd2bp2	1500011B02Rik|2410024K20Rik|AW048183	CD2 antigen (cytoplasmic tail) binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160364299-2	chr2	160363799	160364799	+	935.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010658, exon 1 of 1)	3' UTR (NM_010658, exon 1 of 1)	2766.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	2.5	23.5	11.0	7.0	31.5	14.5
Merged-chr15-98507090-2	chr15	98506590	98507590	+	935.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	9616.0	NM_001001807	258502.0	Mm.377539	NM_001001807	ENSMUSG00000054036	Olfr279	MOR122-1|Olfr234|Olfr234-ps1|Olfr279-ps1	olfactory receptor 279	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67318105-3	chr17	67317644	67318644	+	935.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	36315.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90236928-3	chr9	90236394	90237394	+	935.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	33875.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-56712378-3	chr13	56711884	56712884	+	935.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164042, intron 1 of 6)	intron (NM_001164042, intron 1 of 6)	8716.0	NM_001164042	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	0.0	0.5	1.5	0.0	0.0	0.0
Merged-chr14-65358943-2	chr14	65358443	65359443	+	935.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199029, intron 1 of 9)	CpG	267.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139387993-4	chr5	139387477	139388477	+	935.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	-1927.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55809483-1	chr16	55808983	55809983	+	935.0	f0_balb.idr	Intergenic	Intergenic	12655.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102193608-2	chr11	102193108	102194108	+	935.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175935, exon 6 of 6)	exon (NM_175935, exon 6 of 6)	3909.0	NM_175935	68401.0	Mm.22385	NM_175935	ENSMUSG00000034793	G6pc3	0710001K01Rik|AU019276|AU045429|AV128920|AW545836|UGRP	glucose 6 phosphatase, catalytic, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37616842-2	chr9	37616342	37617342	+	935.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011734, exon 2 of 10)	exon (NM_011734, exon 2 of 10)	2995.0	NM_011734	22619.0	Mm.196345	NM_011734	ENSMUSG00000001942	Siae	LSE|Ysg2	sialic acid acetylesterase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-133552877-6	chr2	133552349	133553349	+	935.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007553, exon 1 of 3)	5' UTR (NM_007553, exon 1 of 3)	690.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45023944-2	chr19	45023444	45024444	+	935.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145503, exon 3 of 5)	exon (NM_145503, exon 3 of 5)	5809.0	NM_001130526	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140208579-2	chr5	140208079	140209079	+	935.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152617, intron 10 of 16)	intron (NR_152617, intron 10 of 16)	-33661.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81055749-3	chr13	81055241	81056241	+	935.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015587, intron 1 of 1)	Lx7|LINE|L1	91667.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105748426-4	chr4	105747899	105748899	+	935.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-492814.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79666048-2	chr3	79665575	79666575	+	935.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_212452, intron 9 of 17)	intron (NM_212452, intron 9 of 17)	36996.0	NM_029482	75939.0	Mm.221520	NM_029482	ENSMUSG00000027811	4930579G24Rik	-	RIKEN cDNA 4930579G24 gene	protein-coding	0.0	2.5	0.0	0.0	2.0	1.0
Merged-chr4-33262443-2	chr4	33261943	33262943	+	935.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-13656.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	8.0	4.5	3.0	3.0	12.0	12.5
Merged-chr9-118879719-2	chr9	118879210	118880210	+	935.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 12 of 13)	ORR1D1|LTR|ERVL-MaLR	-46826.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	5.0	16.0	4.0	0.0	7.0	3.0
Merged-chr14-99299066-2	chr14	99298566	99299566	+	935.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009769, exon 1 of 4)	exon (NM_009769, exon 1 of 4)	375.0	NM_009769	12224.0	Mm.30262	NM_009769	ENSMUSG00000005148	Klf5	4930520J07Rik|Bteb2|CKLF|IKLF	Kruppel-like factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20828576-5	chr14	20828080	20829080	+	935.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8082.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	38.5	162.5	104.5	29.5	143.5	121.5
Merged-chr2-164953418-3	chr2	164952911	164953911	+	935.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013599, exon 11 of 13)	exon (NM_013599, exon 11 of 13)	5192.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	0.0	5.0	1.0	0.0	0.0	7.5
Merged-chr16-95955450-3	chr16	95954940	95955940	+	935.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-26363.0	NR_040484	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39417287-2	chr6	39416787	39417787	+	935.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018810, intron 1 of 7)	intron (NM_018810, intron 1 of 7)	2489.0	NM_001311109	54484.0	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112004330-4	chr13	112003835	112004835	+	935.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136399.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-63223273-4	chr10	63222771	63223771	+	934.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19319.0	NM_182992	68802.0	Mm.259767	NM_182992	ENSMUSG00000020067	Mypn	1110056A04Rik|9830112J03|AI853556|mKIAA4170	myopalladin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40737305-4	chr19	40736805	40737805	+	934.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 9 of 9)	intron (NM_001304721, intron 9 of 9)	77535.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	10.0	4.0	5.0	0.0	4.0	10.5
Merged-chr4-133201276-6	chr4	133200742	133201742	+	934.9722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5587.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	7.5	14.0	9.0	4.0	9.5	8.0
Merged-chr9-50522803-4	chr9	50522321	50523321	+	934.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011220, intron 4 of 5)	intron (NM_011220, intron 4 of 5)	5820.0	NM_011220	19286.0	Mm.35856	NM_011220	ENSMUSG00000032067	Pts	PTPS	6-pyruvoyl-tetrahydropterin synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126136956-4	chr4	126136473	126137473	+	934.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 8 of 10)	intron (NM_028800, intron 8 of 10)	-11030.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116136368-4	chr6	116135858	116136858	+	934.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 2 of 5)	intron (NM_177412, intron 2 of 5)	57016.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-124071890-4	chr1	124071391	124072391	+	934.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26332.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	2.0	28.0	11.5	0.0	24.0	10.0
Merged-chr1-171649066-4	chr1	171648559	171649559	+	934.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347184)	promoter-TSS (NM_001347184)	-60.0	NM_001347184	75345.0	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	3.5	7.0	2.5	7.5	8.0	2.0
Merged-chr12-101995064-3	chr12	101994656	101995656	+	934.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016856, intron 8 of 14)	(CA)n|Simple_repeat|Simple_repeat	19182.0	NM_016856	51786.0	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	47.5	51.5	51.5	19.5	13.5	16.0
Merged-chr2-58715101-4	chr2	58714572	58715572	+	934.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289660, intron 1 of 7)	L1MA4A|LINE|L1	-40112.0	NM_001289659	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81427158-3	chr10	81426691	81427691	+	934.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008688)	promoter-TSS (NM_008688)	-18.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24409409-4	chr2	24408887	24409887	+	934.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177611)	TTS (NM_177611)	22771.0	NM_001355232	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12000887-3	chr19	12000388	12001388	+	934.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35044.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102924714-4	chr2	102924212	102925212	+	934.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23047.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	16.5	29.0	28.0	25.0	69.0	26.5
Merged-chr16-44986287-4	chr16	44985802	44986802	+	934.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	42624.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144287353-4	chr2	144286851	144287851	+	934.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16447.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141168016-4	chr7	141167555	141168555	+	934.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172100, intron 1 of 9)	intron (NM_001172100, intron 1 of 9)	631.0	NM_001172101	107702.0	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76887008-4	chr12	76886498	76887498	+	934.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145927, intron 4 of 11)	ORR1E|LTR|ERVL-MaLR	49531.0	NM_145927	110606.0	Mm.151174	NM_145927	ENSMUSG00000033373	Fntb	2010013E13Rik|AA409500	farnesyltransferase, CAAX box, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125199448-4	chr8	125198963	125199963	+	934.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 9 of 12)	intron (NM_174854, intron 9 of 12)	145268.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	16.0	9.5	14.0	17.5	120.5	90.5
Merged-chr2-117314003-4	chr2	117313501	117314501	+	934.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 2 of 16)	intron (NM_011246, intron 2 of 16)	28876.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182520203-3	chr1	182519730	182520730	+	934.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2620.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69044966-5	chr3	69044514	69045514	+	934.8800050000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025863)	promoter-TSS (NM_025863)	-272.0	NM_025863	66949.0	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	0.0	0.0	0.0	5.5	7.5	2.0
Merged-chr19-46510151-2	chr19	46509651	46510651	+	934.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	8503.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138253643-4	chr1	138253136	138254136	+	934.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-20102.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4757049-6	chr16	4756527	4757527	+	934.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357050)	promoter-TSS (NM_001357050)	81.0	NM_001357050	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-68471314-4	chr2	68470759	68471759	+	934.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 1 of 17)	CpG	722.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46889914-3	chr8	46889395	46890395	+	934.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96992.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164641318-4	chr2	164640823	164641823	+	934.8624880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2521.0	NM_001012723	277345.0	Mm.247244	NM_001012723	ENSMUSG00000070530	Wfdc16	BC043944|WAP16	WAP four-disulfide core domain 16	protein-coding	2.0	7.5	4.0	2.0	9.5	2.0
Merged-chr15-77610454-3	chr15	77609960	77610960	+	934.8444210000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB1|LINE|L1	-14335.0	NM_177820	328561.0	Mm.379486	NM_177820	ENSMUSG00000050014	Apol10b	9130218O11Rik	apolipoprotein L 10B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-81950298-4	chr11	81949790	81950790	+	934.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034013, intron 1 of 9)	intron (NM_001034013, intron 1 of 9)	18106.0	NM_001034013	11418.0	Mm.234998	NM_007384	ENSMUSG00000020704	Asic2	ACIC2|Accn1|BNC1|BNaC1|BNaC1a|Mdeg	acid-sensing (proton-gated) ion channel 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119376654-2	chr11	119376154	119377154	+	934.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178743, intron 12 of 16)	intron (NM_178743, intron 12 of 16)	-13818.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120632122-2	chr11	120631622	120632622	+	934.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010756, intron 1 of 2)	intron (NM_010756, intron 1 of 2)	1425.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-73847967-2	chr18	73847467	73848467	+	934.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11418.0	NM_027741	71263.0	Mm.126220	NM_027741	ENSMUSG00000064036	Mro	4930507C04Rik|4933435E20Rik	maestro	protein-coding	0.0	0.5	9.5	0.0	2.5	7.5
Merged-chr3-95986532-4	chr3	95986008	95987008	+	934.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045872, exon 3 of 3)	non-coding (NR_045872, exon 3 of 3)	998.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	133.0	263.0	177.0	112.5	352.0	190.5
Merged-chr9-108341175-4	chr9	108340648	108341648	+	934.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001329528)	TTS (NM_001329528)	2068.0	NM_001329527	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80180656-4	chr7	80180149	80181149	+	934.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6192.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	12.5	107.5	42.5	7.0	28.0	25.5
Merged-chr18-88771208-3	chr18	88770761	88771761	+	934.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122946.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-71863335-3	chr11	71862839	71863839	+	934.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	76783.0	NR_045942	73816.0	Mm.390391	NR_045942	ENSMUSG00000085528	4930401O10Rik	-	RIKEN cDNA 4930401O10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67646847-4	chr10	67646351	67647351	+	934.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74892.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46699370-4	chr19	46698855	46699855	+	934.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025563, intron 1 of 4)	intron (NM_025563, intron 1 of 4)	-8088.0	NM_020577	57344.0	Mm.28566	NM_020577	ENSMUSG00000003559	As3mt	2310045H08Rik|Cyt19	arsenic (+3 oxidation state) methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35298127-4	chr2	35297617	35298617	+	934.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206368, intron 9 of 16)	intron (NM_001206368, intron 9 of 16)	15737.0	NM_146120	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86490118-4	chr6	86489613	86490613	+	934.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1886.0	NR_040292	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52844221-4	chr3	52843749	52844749	+	934.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83417.0	NR_040555	622124.0	Mm.389434	NR_040555	ENSMUSG00000104401	Gm20750	-	predicted gene, 20750	ncRNA	0.5	3.5	4.0	0.0	6.0	0.0
Merged-chr6-48083982-3	chr6	48083480	48084480	+	934.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362062, intron 1 of 5)	intron (NM_001362062, intron 1 of 5)	2613.0	NM_001347142	69228.0	Mm.207555	NM_001163475	ENSMUSG00000057691	Zfp746	2810407L07Rik|AI317225|Znf746	zinc finger protein 746	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85914554-3	chr12	85914064	85915064	+	934.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 19 of 32)	intron (NM_001347395, intron 19 of 32)	89614.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32221802-11	chr11	32221217	32222217	+	934.7727050000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010117, intron 1 of 17)	CpG	576.0	NM_010117	13650.0	Mm.11545	NM_010117	ENSMUSG00000020282	Rhbdf1	C16ORF8|Dist|Dist1|Egfr-rs|mKIAA4242	rhomboid 5 homolog 1	protein-coding	1.0	0.0	0.0	0.0	0.0	3.0
Merged-chr17-36839225-4	chr17	36838737	36839737	+	934.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025599, intron 2 of 9)	Lx4A|LINE|L1	2091.0	NM_001286726	22670.0	Mm.34587	NM_030698	ENSMUSG00000024457	Trim26	AI462198|Zfp173|Zfp1736	tripartite motif-containing 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-69077432-4	chr2	69076926	69077926	+	934.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 8 of 10)	intron (NM_001347161, intron 8 of 10)	-58374.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29171259-4	chr17	29170744	29171744	+	934.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360239, intron 13 of 21)	intron (NM_001360239, intron 13 of 21)	36188.0	NM_001002786	442827.0	Mm.440341	NM_001002786	ENSMUSG00000064147	Rab44	9830134C10Rik	RAB44, member RAS oncogene family	protein-coding	0.0	5.0	0.0	6.5	3.0	3.0
Merged-chr15-84341226-4	chr15	84340716	84341716	+	934.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162500, intron 12 of 12)	intron (NM_001162500, intron 12 of 12)	15097.0	NM_001162500	64099.0	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75630250-2	chr11	75629750	75630750	+	934.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008916)	promoter-TSS (NM_008916)	-770.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35775997-2	chr16	35775497	35776497	+	934.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_152314, intron 1 of 8)	intron (NR_152314, intron 1 of 8)	5611.0	NM_175111	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	12.0	37.0	29.0	13.0	42.0	48.0
Merged-chr11-119728373-2	chr11	119727873	119728873	+	934.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_028898, intron 4 of 33)	RLTR11D|LTR|ERVK	105992.0	NR_045313	319454.0	Mm.442144	NR_045312	ENSMUSG00000085081	Rptoros	A430071A18Rik	regulatory associated protein of MTOR, complex 1, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-105897379-4	chr14	105896873	105897873	+	934.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011897)	promoter-TSS (NM_011897)	-554.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85557727-4	chr8	85557224	85558224	+	934.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2453.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	13.0	98.0	43.5	24.0	73.0	46.0
Merged-chr13-52533855-4	chr13	52533347	52534347	+	934.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3011.0	NM_001024474	68203.0	Mm.29362	NM_001024474	ENSMUSG00000047842	Diras2	2900052J15Rik|AI414999	DIRAS family, GTP-binding RAS-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83131770-4	chr6	83131232	83132232	+	934.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4076.0	NM_001136227	20166.0	Mm.4139	NM_009106	ENSMUSG00000034930	Rtkn	-	rhotekin	protein-coding	4.0	0.0	1.0	4.0	0.0	1.0
Merged-chr1-186705363-4	chr1	186704868	186705868	+	934.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001329107, exon 1 of 8)	5' UTR (NM_001329107, exon 1 of 8)	621.0	NM_009367	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100403113-4	chr13	100402611	100403611	+	934.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49753.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	22.5	62.0	72.0	5.5	14.0	16.0
Merged-chr9-61954923-4	chr9	61954419	61955419	+	934.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028748, exon 8 of 8)	3' UTR (NM_028748, exon 8 of 8)	-8120.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119233747-3	chr4	119233234	119234234	+	934.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042411)	promoter-TSS (NM_001042411)	-95.0	NM_001042411	56401.0	Mm.27961	NM_019782	ENSMUSG00000028641	P3h1	2410024C15Rik|Gros1|Lepre1	prolyl 3-hydroxylase 1	protein-coding	0.0	0.0	6.0	0.0	0.0	2.0
Merged-chr19-18583084-3	chr19	18582578	18583578	+	934.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 9 of 9)	intron (NM_017375, intron 9 of 9)	48735.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	3.5	9.5	6.0	4.5	3.0	5.0
Merged-chr16-84836224-4	chr16	84835725	84836725	+	934.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016755)	promoter-TSS (NM_016755)	-600.0	NM_001302213	11957.0	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167659312-4	chr2	167658828	167659828	+	934.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145538, intron 1 of 5)	intron (NM_145538, intron 1 of 5)	2216.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31118852-3	chr17	31118294	31119294	+	934.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009593)	TTS (NM_009593)	10817.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	0.0	8.5	11.5	0.5	5.0	3.5
Merged-chr10-10733368-3	chr10	10732894	10733894	+	934.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114333, intron 6 of 9)	intron (NM_001114333, intron 6 of 9)	-17652.0	NR_046010	78056.0	Mm.271285	NR_046010	ENSMUSG00000112730	4930567K20Rik	1700038H22Rik	RIKEN cDNA 4930567K20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155582452-3	chr4	155581959	155582959	+	934.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355599, intron 2 of 10)	intron (NM_001355599, intron 2 of 10)	18644.0	NM_001355599	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	3.5	1.5	1.0	1.0	1.0	0.5
Merged-chr16-33832102-3	chr16	33831605	33832605	+	934.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 1 of 14)	intron (NM_001145884, intron 1 of 14)	2440.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55388852-3	chr12	55388435	55389435	+	934.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310583, intron 1 of 6)	intron (NM_001310583, intron 1 of 6)	4713.0	NM_001310583	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8301997-3	chr12	8301501	8302501	+	934.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013527)	promoter-TSS (NM_013527)	-47.0	NM_013527	238057.0	Mm.271308	NM_013527	ENSMUSG00000037660	Gdf7	BMP12	growth differentiation factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75648306-2	chr11	75647758	75648758	+	934.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008916, exon 12 of 12)	3' UTR (NM_008916, exon 12 of 12)	-3251.0	NM_008659	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	0.0	1.0	0.0	0.0	1.0	0.0
Merged-chr14-63125508-2	chr14	63125008	63126008	+	934.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	B1_Mur1|SINE|Alu	3046.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97807472-2	chr6	97806972	97807972	+	934.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	414.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	4.5	16.0	11.5	12.5	25.0	9.0
Merged-chr18-84091728-4	chr18	84091225	84092225	+	934.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146090, intron 1 of 1)	intron (NM_146090, intron 1 of 1)	3567.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37957395-4	chr19	37956883	37957883	+	934.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 21 of 53)	L1MC4|LINE|L1	86194.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81484189-4	chr10	81483714	81484714	+	934.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1505.0	NM_001311124	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83724932-4	chr8	83724429	83725429	+	934.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106188)	promoter-TSS (NR_106188)	-945.0	NR_106188	102465897.0		NR_106188	ENSMUSG00000098465	Mir1668	Gm27590|mmu-mir-1668	microRNA 1668	ncRNA	2.0	21.5	2.5	0.0	3.5	5.5
Merged-chr5-139470612-4	chr5	139470117	139471117	+	934.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001159908)	TTS (NM_001159908)	-10083.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-43383556-4	chr6	43383038	43384038	+	934.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 8 of 8)	intron (NM_013861, intron 8 of 8)	-58891.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75829049-4	chr14	75828547	75829547	+	934.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15917.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-107516895-4	chr7	107516391	107517391	+	934.587524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021889, intron 6 of 6)	Lx8|LINE|L1	-50542.0	NM_172907	244198.0	Mm.77425	NM_172907	ENSMUSG00000051041	Olfml1	6720478C22|AV321997|BC047207|MVAL564|ONT2|mONT2	olfactomedin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11048160-4	chr19	11047601	11048601	+	934.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102366, intron 2 of 2)	intron (NR_102366, intron 2 of 2)	2465.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-159911866-2	chr2	159911370	159912370	+	934.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35471.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	0.0	12.5	5.0	4.5	7.0	7.0
Merged-chr4-34642583-4	chr4	34642070	34643070	+	934.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151507, intron 8 of 19)	MTE2b|LTR|ERVL-MaLR	27613.0	NM_181406	109093.0	Mm.22363	NM_181406	ENSMUSG00000028292	Rars2	1500002I10Rik|PRO1992|Rarsl	arginyl-tRNA synthetase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-144991974-4	chr7	144991466	144992466	+	934.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-52041.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	2.0	5.0	5.5	0.0	13.0	2.0
Merged-chr4-125065658-4	chr4	125065154	125066154	+	934.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175223)	promoter-TSS (NM_175223)	3.0	NM_175223	75563.0	Mm.50304	NM_175223	ENSMUSG00000042707	Dnali1	1700023A09Rik|AW049135	dynein, axonemal, light intermediate polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59717229-4	chr15	59716724	59717724	+	934.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68570.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93961663-8	chr10	93961159	93962159	+	934.5729369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001304572, exon 12 of 12)	3' UTR (NM_001304572, exon 12 of 12)	2204.0	NR_029764	723908.0		NR_029764	ENSMUSG00000065607	Mir331	Mirn331|mmu-mir-331	microRNA 331	ncRNA	189.0	385.5	263.0	90.5	223.5	111.5
Merged-chr17-84116400-3	chr17	84115903	84116903	+	934.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37743.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136141166-3	chr4	136140668	136141668	+	934.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2654.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	62.5	273.5	153.0	53.5	160.5	128.5
Merged-chr3-14871614-3	chr3	14871120	14872120	+	934.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007606, exon 7 of 7)	exon (NM_007606, exon 7 of 7)	8082.0	NM_007606	12350.0	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	9.0	6.0	0.0	4.5	0.0	3.0
Merged-chr17-45750145-3	chr17	45749645	45750645	+	934.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	15639.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr9-62972349-4	chr9	62971887	62972887	+	934.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 1 of 13)	intron (NM_019663, intron 1 of 13)	8492.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59438634-4	chr4	59438116	59439116	+	934.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163288)	promoter-TSS (NM_001163288)	17.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152406169-4	chr3	152405670	152406670	+	934.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287139, intron 1 of 13)	intron (NM_001287139, intron 1 of 13)	9486.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	26.0	42.5	71.5	3.5	12.0	31.0
Merged-chr13-91505638-3	chr13	91505138	91506138	+	934.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 1 of 15)	intron (NM_001360776, intron 1 of 15)	44541.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	0.0	11.5	11.0	2.0	9.5	9.0
Merged-chr16-92823652-4	chr16	92823125	92824125	+	934.526794	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	2449.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103969298-8	chr2	103968769	103969769	+	934.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142336)	promoter-TSS (NM_001142336)	-288.0	NM_001142336	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108536886-8	chr6	108536397	108537397	+	934.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 60 of 61)	intron (NM_010585, intron 60 of 61)	47154.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	24.5	33.5	17.0	12.5	31.0	14.5
Merged-chr16-39109621-2	chr16	39109121	39110121	+	934.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79329.0	NR_153800	102640746.0		NR_153800		Gm36742	-	predicted gene, 36742	ncRNA	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr11-78923271-2	chr11	78922771	78923771	+	934.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010927, intron 2 of 26)	intron (NM_010927, intron 2 of 26)	-1469.0	NM_001313921	18126.0	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23251800-2	chr11	23251300	23252300	+	934.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-4241.0	NM_001035226	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3754030-2	chr2	3753530	3754530	+	934.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	40572.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124446031-5	chr5	124445526	124446526	+	934.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310727)	promoter-TSS (NM_001310727)	527.0	NM_001310723	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137504943-2	chr5	137504443	137505443	+	934.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2514.0	NM_028753	74097.0	Mm.290242	NM_028753	ENSMUSG00000029715	Pop7	0610037N12Rik|AI852017|Rpp20	processing of precursor 7, ribonuclease P family, (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43920029-2	chr19	43919529	43920529	+	934.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028029, intron 1 of 15)	RMER6B|LTR|ERVK	20169.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	3.5	4.0	9.0	4.5	0.0	1.5
Merged-chr6-94536509-4	chr6	94536014	94537014	+	934.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026255, intron 5 of 9)	intron (NM_026255, intron 5 of 9)	36200.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	5.5	5.5	3.0	0.0	7.0	2.5
Merged-chr16-4370751-2	chr16	4370251	4371251	+	934.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009624, intron 2 of 10)	intron (NM_009624, intron 2 of 10)	49747.0	NM_001291910	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136202602-2	chr4	136202102	136203102	+	934.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3763.0	NM_001008232	230837.0	Mm.77788	NM_001008232	ENSMUSG00000036995	Asap3	9430088F20Rik|Ddefl1|Gm140|UPLC1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-35131727-4	chr4	35131205	35132205	+	934.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-20350.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121884759-2	chr3	121884259	121885259	+	934.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-68470.0	NM_172525	214137.0	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64740842-4	chr9	64740322	64741322	+	934.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3066.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-19977731-2	chr14	19977231	19978231	+	934.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285910)	promoter-TSS (NM_001285910)	-482.0	NM_001285909	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108441837-2	chr3	108441337	108442337	+	934.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011319, intron 1 of 11)	intron (NM_011319, intron 1 of 11)	3422.0	NM_011319	20226.0	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	2.0	0.0	1.5
Merged-chr4-145216914-2	chr4	145216414	145217414	+	934.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 9 of 9)	intron (NM_011610, intron 9 of 9)	-21909.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83641246-2	chr6	83640746	83641746	+	934.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1-int|LTR|ERVL-MaLR	14870.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	6.0	21.5	12.0	4.0	28.5	29.5
Merged-chr18-20787240-4	chr18	20786730	20787730	+	934.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40826.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11071321-3	chr8	11070834	11071834	+	934.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62904.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130914846-4	chr4	130914323	130915323	+	934.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	MIR3|SINE|MIR	1489.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-35380793-3	chr13	35380302	35381302	+	934.488892	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-168754.0	NR_126478	75543.0	Mm.489052	NR_126478	ENSMUSG00000113770	1700019C18Rik	-	RIKEN cDNA 1700019C18 gene	ncRNA	1.5	1.0	0.0	0.0	3.0	2.5
Merged-chr11-70874319-4	chr11	70873811	70874811	+	934.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291143, intron 2 of 18)	intron (NM_001291143, intron 2 of 18)	29550.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	5.0	24.0	10.0	27.5	41.0	11.5
Merged-chr7-100520886-4	chr7	100520392	100521392	+	934.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6077.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155755922-4	chr2	155755423	155756423	+	934.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011171)	TTS (NM_011171)	4706.0	NM_011171	19124.0	Mm.3243	NM_011171	ENSMUSG00000027611	Procr	AI325044|Ccca|Ccd41|Epcr	protein C receptor, endothelial	protein-coding	3.5	0.0	0.5	0.0	2.5	3.5
Merged-chr6-124874976-3	chr6	124874476	124875476	+	934.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013488, intron 3 of 9)	intron (NM_013488, intron 3 of 9)	-10993.0	NM_001355257	14788.0	Mm.2514	NM_013533	ENSMUSG00000038390	Gpr162	A-2|BC031437|Grca	G protein-coupled receptor 162	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165707489-3	chr1	165706985	165707985	+	934.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	609.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105948491-3	chr3	105948008	105949008	+	934.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304719, intron 8 of 9)	L2|LINE|L2	-10990.0	NM_027432	70465.0	Mm.5110	NM_027432	ENSMUSG00000000561	Wdr77	2610003I18Rik|2610312E17Rik|C79984|p44/MEP50	WD repeat domain 77	protein-coding	5.0	3.0	4.0	0.0	0.5	2.5
Merged-chr16-21331430-3	chr16	21330922	21331922	+	934.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_131983)	TTS (NR_131983)	1934.0	NR_131983	76222.0	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-121215207-4	chr6	121214704	121215704	+	934.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017379, intron 1 of 4)	intron (NM_017379, intron 1 of 4)	4470.0	NM_017379	53857.0	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51553556-4	chr10	51553052	51554052	+	934.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36908.0	NM_029894	77296.0	Mm.30588	NM_029894	ENSMUSG00000019909	Fam162b	9430073N08Rik	family with sequence similarity 162, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120085235-4	chr6	120084741	120085741	+	934.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-8139.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22860261-3	chr8	22859757	22860757	+	934.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081149, intron 1 of 17)	CpG	718.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60797165-3	chr18	60796668	60797668	+	934.400024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6681.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	6.0	22.0	9.5	1.0	1.0	2.5
Merged-chr16-17131606-4	chr16	17131084	17132084	+	934.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022324, intron 2 of 2)	CpG	799.0	NM_022324	64136.0	Mm.30222	NM_022324	ENSMUSG00000022769	Sdf2l1	-	stromal cell-derived factor 2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123895331-2	chr5	123894823	123895823	+	934.400024	f0_c57.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-11952.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	1.0	7.0	3.5	1.0	1.5	3.5
Merged-chr9-41154199-4	chr9	41153694	41154694	+	934.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	3868.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	26.5	57.0	38.5	15.5	34.0	13.5
Merged-chr15-61988011-6	chr15	61987472	61988472	+	934.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010849, exon 2 of 3)	exon (NM_010849, exon 2 of 3)	2631.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117134245-4	chr5	117133791	117134791	+	934.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	703.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	55.0	93.0	117.0	79.5	127.5	113.5
Merged-chr12-40271406-4	chr12	40270897	40271897	+	934.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	48033.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80661055-2	chr10	80660555	80661555	+	934.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3984.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34765074-4	chr8	34764570	34765570	+	934.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42540.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	8.5	2.5	3.0	2.0	0.5	5.5
Merged-chr8-40491575-4	chr8	40491076	40492076	+	934.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011135)	TTS (NM_011135)	18903.0	NM_001361938	18983.0	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	6.0	20.0	14.5	14.5	67.5	40.5
Merged-chr1-161035791-5	chr1	161035319	161036319	+	934.3666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151478)	promoter-TSS (NR_151478)	903.0	NR_153812	14455.0	Mm.270065	NR_002840	ENSMUSG00000053332	Gas5	Gas-5|Mir5117|Snhg2	growth arrest specific 5	ncRNA	56.0	171.5	129.0	66.5	176.0	126.5
Merged-chr4-135960944-3	chr4	135960457	135961457	+	934.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357530, intron 9 of 9)	intron (NM_001357530, intron 9 of 9)	-2768.0	NM_001356493	74246.0	Mm.247946	NM_178389	ENSMUSG00000028671	Gale	2310002A12Rik|AI323962	galactose-4-epimerase, UDP	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27692402-4	chr3	27691884	27692884	+	934.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 1 of 26)	intron (NM_001356953, intron 1 of 26)	18068.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117147681-4	chr10	117147167	117148167	+	934.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177798, intron 1 of 9)	intron (NM_177798, intron 1 of 9)	807.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63121985-4	chr14	63121491	63122491	+	934.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007798)	promoter-TSS (NM_007798)	-471.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95075313-4	chr10	95074826	95075826	+	934.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70499.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43554671-3	chr17	43554200	43555200	+	934.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11061.0	NM_001254953	100043332.0	Mm.17626	NM_001254953	ENSMUSG00000096140	Ankrd66	AU041848|D730048J04Rik|Gm4368	ankyrin repeat domain 66	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120495092-3	chr8	120494631	120495631	+	934.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	6265.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-35290418-3	chr11	35289905	35290905	+	934.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011412, intron 4 of 35)	intron (NM_011412, intron 4 of 35)	168949.0	NM_011412	20564.0	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit guidance ligand 3	protein-coding	5.0	11.0	4.5	14.0	1.0	6.0
Merged-chr16-35756065-3	chr16	35755569	35756569	+	934.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	intron (NM_153550, intron 1 of 8)	13287.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	20.0	46.0	34.0	23.5	43.0	35.5
Merged-chr4-155122065-3	chr4	155121570	155122570	+	934.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356327, intron 10 of 12)	intron (NM_001356327, intron 10 of 12)	35466.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121382938-4	chr5	121382453	121383453	+	934.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359947, intron 2 of 11)	intron (NM_001359947, intron 2 of 11)	2456.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	5.5	12.5	11.5	16.0	31.5	10.5
Merged-chr13-99315019-4	chr13	99314509	99315509	+	934.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29669.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	6.5	12.0	4.0	6.5	12.0	7.5
Merged-chr18-66291826-3	chr18	66291318	66292318	+	934.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178793)	promoter-TSS (NM_178793)	20.0	NM_178793	320924.0	Mm.442049	NM_178793	ENSMUSG00000046318	Ccbe1	4933426F18Rik|9430093N24Rik|mKIAA1983	collagen and calcium binding EGF domains 1	protein-coding	1.5	0.0	0.0	0.0	0.0	1.5
Merged-chr2-93597956-4	chr2	93597474	93598474	+	934.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44460.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	0.0	3.5	2.0	0.5	0.0	0.5
Merged-chr16-23269667-3	chr16	23269217	23270217	+	934.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-20753.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84590398-4	chr18	84589847	84590847	+	934.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033341)	promoter-TSS (NM_001033341)	-843.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-113703892-2	chr11	113703392	113704392	+	934.2999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_029794, intron 3 of 6)	intron (NM_029794, intron 3 of 6)	5634.0	NM_026682	52670.0	Mm.229207	NM_026682	ENSMUSG00000018727	Cpsf4l	0610010C04Rik|1500000C01Rik|D11Ertd636e	cleavage and polyadenylation specific factor 4-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24781299-4	chr13	24780772	24781772	+	934.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19335.0	NM_020567	57441.0	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23987935-4	chr11	23987470	23988470	+	934.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90086.0	NM_016707	14025.0	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	1.5	0.0	1.5	1.5	0.0	1.5
Merged-chr19-21112018-4	chr19	21111384	21112384	+	934.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7174.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0.0	0.0	0.0	0.0	4.0	0.0
Merged-chr11-90220237-4	chr11	90219797	90220797	+	934.25415	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29179.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	7.5	5.0	1.0	6.0	6.5	0.0
Merged-chr3-107103117-2	chr3	107102624	107103624	+	934.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008417, intron 1 of 2)	intron (NM_008417, intron 1 of 2)	1557.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	10.5	14.0	12.5	13.5	23.5	28.5
Merged-chr16-78232427-4	chr16	78231925	78232925	+	934.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23029.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-135323573-4	chr6	135323045	135324045	+	934.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13161.0	NM_029595	76400.0	Mm.293018	NM_029595	ENSMUSG00000047104	Pbp2	1700023A18Rik|AI326308|Pebp-2|Pebp2	phosphatidylethanolamine binding protein 2	protein-coding	4.0	6.0	0.0	10.0	0.0	2.0
Merged-chr6-94604808-4	chr6	94604383	94605383	+	934.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026255)	TTS (NM_026255)	1532.0	NR_106008	102466992.0		NR_106008	ENSMUSG00000098531	Mir7041	Gm27872|mmu-mir-7041	microRNA 7041	ncRNA	0.5	6.5	2.0	0.0	0.0	1.0
Merged-chr4-145211431-4	chr4	145210892	145211892	+	934.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011610)	TTS (NM_011610)	-16387.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152343541-4	chr2	152343063	152344063	+	934.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175093, intron 1 of 3)	PB1D10|SINE|Alu	497.0	NM_175093	228775.0	Mm.276018	NM_144554	ENSMUSG00000032715	Trib3	Ifld2|Nipk|SINK|SKIP3|TRB-3|Trb3	tribbles pseudokinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-24975609-4	chr12	24975112	24976112	+	934.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081378, intron 1 of 31)	intron (NM_001081378, intron 1 of 31)	680.0	NM_001081378	77480.0	Mm.250641	NM_001081378	ENSMUSG00000036333	Kidins220	3110039L19Rik|AI194387|AI316525|C330002I19Rik|mKIAA1250	kinase D-interacting substrate 220	protein-coding	17.0	55.5	62.0	13.5	53.5	51.0
Merged-chr10-83922804-4	chr10	83922293	83923293	+	934.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	177904.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-99368261-4	chr4	99367766	99368766	+	934.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	174119.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-89197637-4	chr9	89197146	89198146	+	934.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16B2|LTR|ERVL	-1627.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	0.0	2.5	0.0	6.0	12.5	4.5
Merged-chr10-62187081-4	chr10	62186598	62187598	+	934.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_197996, exon 8 of 8)	3' UTR (NM_197996, exon 8 of 8)	7129.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172352582-4	chr1	172352072	172353072	+	934.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	11362.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	9.5	30.5	20.0	20.0	55.0	28.0
Merged-chr11-63078195-4	chr11	63077691	63078691	+	934.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027660, intron 4 of 7)	intron (NM_027660, intron 4 of 7)	16532.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116144554-4	chr4	116144036	116145036	+	934.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026547)	promoter-TSS (NM_026547)	80.0	NM_026547	68075.0	Mm.132803	NM_026547	ENSMUSG00000028701	Lurap1	1520402A15Rik|Lrp35a	leucine rich adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73773099-4	chr12	73772596	73773596	+	934.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 12 of 13)	intron (NM_008856, intron 12 of 13)	-128228.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40764226-4	chr9	40763719	40764719	+	934.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 2 of 6)	intron (NM_133733, intron 2 of 6)	-37054.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	3.5	7.0	9.5	14.5	63.0	33.0
Merged-chr6-72349813-4	chr6	72349330	72350330	+	934.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026696, exon 4 of 4)	3' UTR (NM_026696, exon 4 of 4)	2513.0	NM_026696	68364.0	Mm.52711	NM_026696	ENSMUSG00000058706	0610030E20Rik	1500031N04Rik|2810411C16Rik|AI461894	RIKEN cDNA 0610030E20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24766582-3	chr16	24766068	24767068	+	934.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 8 of 12)	intron (NM_178665, intron 8 of 12)	44713.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92412445-6	chr16	92411852	92412852	+	934.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-12274.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36711756-2	chr1	36711256	36712256	+	934.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-1831.0	NM_146107	226977.0	Mm.28521	NM_146107	ENSMUSG00000037351	Actr1b	2310066K23Rik|AA960180|AI851923|Arp1b	ARP1 actin-related protein 1B, centractin beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117281682-4	chr10	117281183	117282183	+	934.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017372, intron 1 of 3)	intron (NM_017372, intron 1 of 3)	589.0	NM_017372	17105.0	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-71968802-4	chr12	71968299	71969299	+	934.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026102, intron 17 of 25)	intron (NM_026102, intron 17 of 25)	79256.0	NM_001286452	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	0.0	0.5	1.0	0.0	1.5	0.5
Merged-chr6-82769917-4	chr6	82769413	82770413	+	934.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 1 of 17)	intron (NM_013820, intron 1 of 17)	4541.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38760920-4	chr16	38760377	38761377	+	934.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152434, intron 4 of 6)	intron (NR_152434, intron 4 of 6)	18618.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	25.0	42.5	23.0	24.5	40.5	32.0
Merged-chr2-116890527-4	chr2	116890017	116891017	+	934.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355572, intron 10 of 10)	intron (NM_001355572, intron 10 of 10)	-9635.0	NR_040336	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67782151-4	chr15	67781756	67782756	+	934.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	476600.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0.0	10.0	0.5	0.0	0.0	4.0
Merged-chr2-117343605-6	chr2	117343063	117344063	+	934.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011246)	promoter-TSS (NM_011246)	-686.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104165580-3	chr3	104165068	104166068	+	934.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133853, intron 1 of 21)	L2c|LINE|L2	54838.0	NM_133853	99470.0	Mm.264849	NM_133853	ENSMUSG00000052539	Magi3	4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41278721-3	chr19	41278219	41279219	+	934.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 16 of 16)	intron (NM_031376, intron 16 of 16)	-14715.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	3.5	10.0	8.0	5.0	10.0	9.0
Merged-chr6-122310524-4	chr6	122310098	122311098	+	934.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010749, intron 1 of 6)	intron (NM_010749, intron 1 of 6)	1878.0	NM_010749	17113.0	Mm.249225	NM_010749	ENSMUSG00000007458	M6pr	CD-MPR|Mpr46	mannose-6-phosphate receptor, cation dependent	protein-coding	4.0	14.5	12.0	3.0	14.0	6.0
Merged-chr4-46544523-2	chr4	46544023	46545023	+	934.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 6 of 11)	B3|SINE|B2	-8382.0	NM_029077	74735.0	Mm.240252	NM_029077	ENSMUSG00000039853	Trim14	5830400N10Rik|pub	tripartite motif-containing 14	protein-coding	6.5	5.0	0.5	2.5	3.5	3.0
Merged-chr19-44408790-4	chr19	44408302	44409302	+	934.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-1093.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168625252-3	chr2	168624758	168625758	+	934.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15501.0	NR_105971	102466784.0		NR_105971	ENSMUSG00000105496	Mir7004	mmu-mir-7004	microRNA 7004	ncRNA	1.0	0.0	0.0	1.0	3.0	1.0
Merged-chr13-41220481-6	chr13	41219984	41220984	+	934.055542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019423)	promoter-TSS (NM_019423)	-81.0	NM_019423	54326.0	Mm.2567	NM_019423	ENSMUSG00000021364	Elovl2	AI317360|Ssc2	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117175175-4	chr11	117174677	117175677	+	934.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-24484.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105616291-4	chr5	105615720	105616720	+	934.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-83749.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	6.5	24.5	18.5	7.5	14.5	13.5
Merged-chr9-88702344-4	chr9	88701845	88702845	+	934.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359992, intron 2 of 2)	URR1B|DNA|hAT-Charlie	17242.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112871761-4	chr13	112871247	112872247	+	934.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028151, intron 25 of 26)	intron (NM_028151, intron 25 of 26)	55633.0	NM_028151	72198.0	Mm.291029	NM_028151	ENSMUSG00000016018	Skiv2l2	2610528A15Rik|Mtrex|mKIAA0052	superkiller viralicidic activity 2-like 2 (S. cerevisiae)	protein-coding	7.0	1.0	6.0	3.0	10.5	1.0
Merged-chr16-98107301-3	chr16	98106775	98107775	+	934.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24836.0	NR_015491	320586.0	Mm.442230	NR_015491		A630089N07Rik	-	RIKEN cDNA A630089N07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97287476-2	chr6	97286976	97287976	+	934.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001346637, exon 23 of 23)	3' UTR (NM_001346637, exon 23 of 23)	-34696.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	3.0	0.0	0.5	3.0	0.0	0.5
Merged-chr18-61078021-2	chr18	61077521	61078521	+	934.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008809, intron 16 of 22)	intron (NM_008809, intron 16 of 22)	-27551.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134066769-2	chr1	134066269	134067269	+	934.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12386.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-24958722-2	chr19	24958233	24959233	+	934.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146097, intron 1 of 14)	intron (NM_146097, intron 1 of 14)	2883.0	NR_033744	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	7.5	13.5	14.5	4.5	9.5	5.0
Merged-chr19-5486997-2	chr19	5486497	5487497	+	934.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153769, intron 3 of 14)	intron (NR_153769, intron 3 of 14)	1382.0	NM_027877	71711.0	Mm.27697	NM_027877	ENSMUSG00000024906	Mus81	1200008A18Rik|AI182501|AW045863	MUS81 structure-specific endonuclease subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11669235-2	chr11	11668735	11669735	+	934.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16690.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-72448184-2	chr9	72447684	72448684	+	934.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008613, intron 4 of 9)	intron (NM_008613, intron 4 of 9)	9655.0	NM_008613	17427.0	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	3.5	0.5	2.0	1.0	3.5	0.0
Merged-chr5-121425472-1	chr5	121424972	121425972	+	934.0	f1_c57bl6.idr	intron (NM_172722, intron 13 of 23)	intron (NM_172722, intron 13 of 23)	27002.0	NM_026129	67397.0	Mm.154570	NM_026129	ENSMUSG00000029616	Erp29	1200015M03Rik|2810446M09Rik|AW209030|Erp28|Erp31|PDI-Db	endoplasmic reticulum protein 29	protein-coding	6.5	0.0	9.5	0.0	0.0	5.0
Merged-chr10-4384691-2	chr10	4384191	4385191	+	934.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033466, intron 1 of 2)	B1_Mm|SINE|Alu	2784.0	NM_001359811	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-158019785-2	chr3	158019285	158020285	+	934.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001093752, intron 6 of 12)	intron (NM_001093752, intron 6 of 12)	11987.0	NM_001356997	69207.0	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71056601-2	chr2	71056101	71057101	+	934.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145524)	promoter-TSS (NM_145524)	857.0	NM_001165980	75763.0	Mm.281668	NM_198005	ENSMUSG00000041966	Dcaf17	2810055O12Rik|4833418A01Rik|A030004A10Rik|A930009G19Rik|AI448937	DDB1 and CUL4 associated factor 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-33959986-3	chr13	33959484	33960484	+	934.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040707, exon 5 of 5)	non-coding (NR_040707, exon 5 of 5)	-4675.0	NM_001163239	18105.0	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	N-ribosyldihydronicotinamide quinone reductase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80717519-1	chr7	80717019	80718019	+	934.0	f1_balb.idr	intron (NM_016721, intron 36 of 37)	B1_Mus2|SINE|Alu	-28642.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	5.5	5.0	1.5	4.0	8.0	1.5
Merged-chr2-120576277-4	chr2	120575799	120576799	+	934.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009222, intron 1 of 7)	Tigger7|DNA|TcMar-Tigger	8628.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98851480-2	chr15	98850980	98851980	+	934.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033276, exon 34 of 55)	exon (NM_001033276, exon 34 of 55)	19725.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150787445-4	chr2	150786944	150787944	+	934.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153781, intron 1 of 19)	intron (NM_153781, intron 1 of 19)	648.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167419378-4	chr2	167418876	167419876	+	934.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2334.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122218016-2	chr5	122217516	122218516	+	934.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359454, intron 3 of 7)	intron (NM_001359454, intron 3 of 7)	7729.0	NM_028752	74096.0	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12221827-1	chr18	12221327	12222327	+	934.0	f1_balb.idr	exon (NM_008720, exon 3 of 25)	exon (NM_008720, exon 3 of 25)	14559.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	3.0	10.0	17.0	11.0	9.0	3.5
Merged-chr11-97632928-2	chr11	97632428	97633428	+	934.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3212.0	NM_175332	103551.0	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	10.5	29.0	15.0	6.5	54.5	22.0
Merged-chr15-100086798-2	chr15	100086298	100087298	+	934.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_037311, intron 2 of 3)	B3A|SINE|B2	48134.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-24602884-2	chr4	24602384	24603384	+	934.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_199467)	TTS (NM_199467)	106433.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167767914-2	chr2	167767414	167768414	+	934.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76737.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-93184290-1	chr9	93183790	93184790	+	934.0	f0_balb.idr	Intergenic	Intergenic	-178557.0	NR_040756	78349.0	Mm.52612	NR_040756	ENSMUSG00000100294	1700034K08Rik	-	RIKEN cDNA 1700034K08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-76974168-2	chr5	76973668	76974668	+	934.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025691)	promoter-TSS (NM_025691)	-533.0	NM_025691	66661.0	Mm.296976	NM_025691	ENSMUSG00000036323	Srp72	5730576P14Rik|72kDa|AI132477|BC019196|C77589	signal recognition particle 72	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83696890-2	chr8	83696362	83697362	+	934.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177262, intron 1 of 21)	intron (NM_177262, intron 1 of 21)	2317.0	NM_177262	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	60.0	67.5	58.0	24.0	53.0	63.5
Merged-chr10-106345049-2	chr10	106344549	106345549	+	934.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-125261.0	NM_001359673	327814.0	Mm.391424	NM_177373	ENSMUSG00000053825	Ppfia2	5330438O12|B230207K17Rik|E130120L08Rik|mKIAA4112	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98215763-3	chr12	98215262	98216262	+	934.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008079, intron 12 of 16)	intron (NM_008079, intron 12 of 16)	43697.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28370527-2	chr7	28370027	28371027	+	934.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138752, intron 2 of 18)	intron (NM_138752, intron 2 of 18)	2135.0	NM_138752	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110611630-1	chr12	110611130	110612130	+	934.0	f1_c57bl6.idr	intron (NM_030238, intron 1 of 76)	B2_Mm1a|SINE|B2	10235.0	NM_030238	13424.0	Mm.181430	NM_030238	ENSMUSG00000018707	Dync1h1	9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325	dynein cytoplasmic 1 heavy chain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-69732242-1	chr14	69731742	69732742	+	934.0	f0_balb.idr	promoter-TSS (NR_130166)	promoter-TSS (NR_130166)	328.0	NM_134078	105513.0	Mm.159637	NM_134078	ENSMUSG00000034190	Chmp7	4930596K11Rik|6330407G04Rik|AI450338|AW550775	charged multivesicular body protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156989729-1	chr1	156989229	156990229	+	934.0	f0_balb.idr	Intergenic	Lx10|LINE|L1	-50103.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	14.0	5.0	0.0	14.0	3.0	0.0
Merged-chr6-83689590-4	chr6	83689108	83690108	+	934.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11751.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17234746-3	chr16	17234251	17235251	+	934.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178922, intron 1 of 2)	intron (NM_178922, intron 1 of 2)	1164.0	NM_178922	58180.0	Mm.261602	NM_178922	ENSMUSG00000050240	Hic2	AA409108|HRG22|mKIAA1020	hypermethylated in cancer 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134092348-2	chr1	134091848	134092848	+	934.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13193.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-28170656-2	chr3	28170156	28171156	+	934.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-92558.0	NM_001163007	665113.0	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-43701115-3	chr10	43700600	43701600	+	934.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2F|LTR|ERVL	-45058.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37056911-4	chr13	37056399	37057399	+	934.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6655.0	NM_001166391	74145.0	Mm.235105	NM_028784	ENSMUSG00000039109	F13a1	1200014I03Rik|AI462306|F13a	coagulation factor XIII, A1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113793639-2	chr13	113793139	113794139	+	934.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172595)	promoter-TSS (NM_172595)	-869.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84624651-2	chr2	84624151	84625151	+	934.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355064, intron 1 of 18)	intron (NM_001355064, intron 1 of 18)	24829.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	7.0	18.0	10.5	11.5	12.5	12.0
Merged-chr19-8784388-2	chr19	8783888	8784888	+	934.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146092, intron 2 of 11)	intron (NM_146092, intron 2 of 11)	1928.0	NM_146092	225895.0	Mm.220886	NM_146092	ENSMUSG00000003680	Taf6l	2810417N14Rik|BB223262|C530024J06Rik|Paf65a	TATA-box binding protein associated factor 6 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165317571-4	chr2	165317069	165318069	+	934.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080287, intron 1 of 20)	intron (NM_080287, intron 1 of 20)	-1218.0	NM_001302754	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25993212-2	chr8	25992712	25993712	+	934.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029037, intron 1 of 4)	B3|SINE|B2	909.0	NM_029037	74653.0	Mm.17631	NM_029037	ENSMUSG00000037251	Pomk	4930444A02Rik|Sgk196	protein-O-mannose kinase	protein-coding	19.0	43.0	36.0	33.0	46.0	30.5
Merged-chr1-86435498-2	chr1	86434998	86435998	+	934.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9169.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-51938951-1	chr1	51938451	51939451	+	934.0	f0_balb.idr	Intergenic	Intergenic	-22973.0	NM_010863	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	13.5	35.0	29.0	12.0	39.0	39.0
Merged-chr9-37146582-3	chr9	37146052	37147052	+	934.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 1 of 12)	CpG	770.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	0.0	0.0	0.5	1.0	0.0	0.0
Merged-chr3-131228263-2	chr3	131227763	131228763	+	934.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	43838.0	NM_008212	15107.0	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99165288-1	chr7	99164788	99165788	+	934.0	f1_c57bl6.idr	intron (NM_026384, intron 2 of 7)	intron (NM_026384, intron 2 of 7)	17425.0	NM_026384	67800.0	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	0.0	0.0	1.5	0.0	1.5	0.0
Merged-chr17-21579691-4	chr17	21579205	21580205	+	933.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357347, intron 4 of 6)	intron (NM_001357347, intron 4 of 6)	12727.0	NM_001357347	381066.0	Mm.441097	NM_001002008	ENSMUSG00000067931	Zfp948	-	zinc finger protein 948	protein-coding	6.5	3.0	3.0	5.5	0.5	3.5
Merged-chr16-21400116-4	chr16	21399626	21400626	+	933.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22992.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77795613-7	chr18	77795097	77796097	+	933.945557	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152167, intron 1 of 2)	intron (NR_152167, intron 1 of 2)	793.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73031322-3	chr17	73030840	73031840	+	933.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-76645.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	16.0	14.5	16.5	6.5	5.5	12.0
Merged-chr2-167804436-4	chr2	167803862	167804862	+	933.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	113185.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3759049-4	chr4	3758535	3759535	+	933.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	44071.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112466785-4	chr13	112466288	112467288	+	933.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010560, intron 1 of 16)	intron (NM_010560, intron 1 of 16)	2718.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67308296-4	chr7	67307790	67308790	+	933.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 3 of 11)	intron (NM_001357324, intron 3 of 11)	64568.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5988645-4	chr13	5988141	5989141	+	933.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	127152.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97998566-2	chr11	97998066	97999066	+	933.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2393.0	NR_152188	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	2.0	2.0	1.5	2.0	2.0	1.5
Merged-chr4-126440789-4	chr4	126440283	126441283	+	933.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153403, intron 16 of 18)	MIRb|SINE|MIR	-11241.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144459164-4	chr2	144458670	144459670	+	933.915466	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033459)	promoter-TSS (NR_033459)	-110.0	NR_033459	668917.0	Mm.152805	NR_033459	ENSMUSG00000083674	Zfp133-ps	Zfp133	zinc finger protein 133, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-121855596-3	chr2	121855100	121856100	+	933.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11370.0	NM_199038	319996.0	Mm.292109	NM_177054	ENSMUSG00000060227	Casc4	D130060C09Rik|VGFG2573	cancer susceptibility candidate 4	protein-coding	9.5	1.0	8.5	5.0	13.0	4.5
Merged-chr1-43501469-3	chr1	43500991	43501991	+	933.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	ORR1F|LTR|ERVL-MaLR	55740.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35534367-4	chr12	35533853	35534853	+	933.88092	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001314027, intron 1 of 9)	intron (NM_001314027, intron 1 of 9)	636.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	2.0	19.5	17.0	4.0	10.5	11.0
Merged-chr1-128608294-3	chr1	128607795	128608795	+	933.8777470000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15996.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	3.5	0.0	0.0	2.0	10.0	6.0
Merged-chr18-23753675-4	chr18	23753172	23754172	+	933.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162941)	promoter-TSS (NM_001162941)	-53.0	NM_001162941	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	2.5	6.5	5.0	0.0	2.0	1.0
Merged-chr3-142295054-4	chr3	142294551	142295551	+	933.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190852, intron 7 of 15)	intron (NM_001190852, intron 7 of 15)	96799.0	NM_022554	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	8.5	11.0	16.5	0.5	7.0	0.0
Merged-chr2-73513449-4	chr2	73512960	73513960	+	933.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	16027.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58632405-7	chr15	58631903	58632903	+	933.857178	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	191024.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11486261-4	chr8	11485769	11486769	+	933.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7770.0	NM_011227	19332.0	Mm.37632	NM_011227	ENSMUSG00000031504	Rab20	AA536966|D8Ertd350e	RAB20, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62007624-4	chr11	62007225	62008225	+	933.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310526, intron 1 of 7)	intron (NM_001310526, intron 1 of 7)	50962.0	NM_001310526	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80749654-2	chr10	80749256	80750256	+	933.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5447.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135570618-3	chr5	135570112	135571112	+	933.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019577, exon 3 of 3)	3' UTR (NM_019577, exon 3 of 3)	2437.0	NM_019577	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	3.5	11.0	11.5	7.5	36.0	11.5
Merged-chr5-124113155-2	chr5	124112655	124113655	+	933.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361483, intron 2 of 5)	intron (NM_001361483, intron 2 of 5)	834.0	NM_001347478	66627.0	Mm.7050	NM_025671	ENSMUSG00000023707	Ogfod2	1300006G11Rik|5730405M13Rik|AU041636|AW552395	2-oxoglutarate and iron-dependent oxygenase domain containing 2	protein-coding	0.0	1.0	0.0	0.0	1.0	0.0
Merged-chr14-63145496-3	chr14	63144940	63145940	+	933.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007798, exon 10 of 10)	3' UTR (NM_007798, exon 10 of 10)	22978.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64381770-4	chr5	64381264	64382264	+	933.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86178.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	10.5	46.0	19.0	41.0	37.0	32.0
Merged-chr8-126628826-4	chr8	126628350	126629350	+	933.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35414.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.0	6.0	1.5	0.0	4.0	5.5
Merged-chr5-62677559-4	chr5	62677041	62678041	+	933.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 12 of 32)	intron (NM_178407, intron 12 of 32)	88636.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10603039-3	chr19	10602530	10603530	+	933.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145496, intron 1 of 16)	intron (NM_145496, intron 1 of 16)	1228.0	NM_145496	225913.0	Mm.374868	NM_145496	ENSMUSG00000034371	Tkfc	BC021917|Dak	triokinase, FMN cyclase	protein-coding	1.5	3.5	3.5	7.0	3.0	8.5
Merged-chr5-121597530-4	chr5	121597035	121598035	+	933.7958369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178799)	TTS (NM_178799)	-3711.0	NM_001308450	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42615278-3	chr10	42614773	42615773	+	933.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-31685.0	NM_152229	21907.0	Mm.287100	NM_152229	ENSMUSG00000019803	Nr2e1	Mtl1|Mtll|TLL|Tlx|XTLL|fierce|frc|tailless	nuclear receptor subfamily 2, group E, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54735223-3	chr14	54734700	54735700	+	933.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 5 of 10)	intron (NM_016972, intron 5 of 10)	-23026.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	33.0	107.0	84.0	47.5	76.0	79.5
Merged-chr5-96914793-3	chr5	96914295	96915295	+	933.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6477.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	9.0	14.0	11.5	20.0	35.5	19.5
Merged-chr13-52579691-4	chr13	52579176	52580176	+	933.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GGGA)n|Simple_repeat|Simple_repeat	-3761.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69946200-2	chr11	69945700	69946700	+	933.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359114, intron 3 of 10)	intron (NM_001359114, intron 3 of 10)	1990.0	NM_009204	20528.0	Mm.10661	NM_009204	ENSMUSG00000018566	Slc2a4	GT2|Glut-4|Glut4|twgy	solute carrier family 2 (facilitated glucose transporter), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120907603-4	chr5	120907131	120908131	+	933.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145211)	promoter-TSS (NM_145211)	-106.0	NM_145211	246730.0	Mm.14301	NM_145211	ENSMUSG00000052776	Oas1a	L3	2'-5' oligoadenylate synthetase 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41092095-4	chr19	41091583	41092583	+	933.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011904, intron 17 of 20)	intron (NM_011904, intron 17 of 20)	-14970.0	NM_153520	226115.0	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78899830-4	chr15	78899327	78900327	+	933.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316686)	promoter-TSS (NM_001316686)	59.0	NM_009164	20401.0	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	12.5	40.5	24.0	7.5	48.5	35.5
Merged-chr3-87401454-4	chr3	87400996	87401996	+	933.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310545, intron 10 of 10)	intron (NM_001310545, intron 10 of 10)	25109.0	NM_178165	229499.0	Mm.255203	NM_153090	ENSMUSG00000059994	Fcrl1	A230020G22Rik|Bxmas1|Bxmh1|Bxmh1b|Fcrh1|Fcrh1l|Fcrh1s|Ifgp1	Fc receptor-like 1	protein-coding	78.0	244.5	187.0	6.5	21.5	13.5
Merged-chr7-16923408-2	chr7	16922908	16923908	+	933.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_007590, intron 1 of 5)	intron (NM_007590, intron 1 of 5)	624.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-142748118-4	chr6	142747606	142748606	+	933.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8580.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47631753-4	chr6	47631242	47632242	+	933.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23352.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	11.0	33.0	15.5	13.0	39.0	10.5
Merged-chr1-160211842-4	chr1	160211359	160212359	+	933.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009786, intron 1 of 5)	intron (NM_009786, intron 1 of 5)	1033.0	NM_009786	12301.0	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	21.0	42.0	42.0	17.5	40.5	35.5
Merged-chr10-26859183-2	chr10	26858683	26859683	+	933.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 4 of 14)	intron (NM_176837, intron 4 of 14)	86671.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20776840-4	chr10	20776317	20777317	+	933.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51739.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	3.5	10.5	17.5	3.5	16.5	16.5
Merged-chr2-180701252-4	chr2	180700735	180701735	+	933.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291432, intron 1 of 5)	intron (NM_001291432, intron 1 of 5)	867.0	NM_011805	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	5.5	34.0	32.5	11.5	32.5	29.0
Merged-chr2-34914255-4	chr2	34913765	34914765	+	933.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028716)	promoter-TSS (NM_028716)	-289.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-24698085-3	chr1	24697613	24698613	+	933.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026719, intron 3 of 15)	L1M4|LINE|L1	19195.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	7.5	12.0	9.5	8.0	24.0	14.0
Merged-chr3-158032323-6	chr3	158031817	158032817	+	933.7222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001093753)	promoter-TSS (NM_001093753)	-545.0	NM_001093753	69207.0	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	0.0	0.0	0.0	0.0	2.5	0.0
Merged-chr13-42015693-4	chr13	42015197	42016197	+	933.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36324.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137886157-4	chr5	137885644	137886644	+	933.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14386.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-92296618-4	chr2	92296117	92297117	+	933.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109690, intron 3 of 15)	intron (NM_001109690, intron 3 of 15)	74440.0	NM_001290774	228366.0	Mm.31158	NM_172670	ENSMUSG00000040434	Large2	5730485C17Rik|AI891893|Gyltl1b|Largel|mKIAA4105	LARGE xylosyl- and glucuronyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63545880-4	chr4	63545355	63546355	+	933.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024173, intron 1 of 2)	intron (NM_024173, intron 1 of 2)	1090.0	NM_024173	66290.0	Mm.371615	NM_024173	ENSMUSG00000039105	Atp6v1g1	1810024D14Rik|AA960677|ATP6J|Atp6g1|VAG1|Vma10	ATPase, H+ transporting, lysosomal V1 subunit G1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-72938972-4	chr14	72938496	72939496	+	933.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	-86607.0	NR_027860	668489.0	Mm.158324	NR_027860		Gm9199	EG668489	glycine cleavage system protein H (aminomethyl carrier) pseudogene	pseudo	11.5	0.0	4.5	11.5	0.0	5.5
Merged-chr8-83897204-2	chr8	83896712	83897712	+	933.7000119999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2886.0	NM_181039	330814.0	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	5.0	0.0	2.5	3.5	0.0	0.0
Merged-chr17-35023880-4	chr17	35023370	35024370	+	933.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347347, exon 13 of 17)	exon (NM_001347347, exon 13 of 17)	4146.0	NR_028258	78376.0	Mm.390966	NM_023893	ENSMUSG00000036185	Sapcd1	2810436B06Rik|G7d|Ng23	suppressor APC domain containing 1	protein-coding	21.5	48.5	19.0	7.5	45.5	16.0
Merged-chr7-90212953-4	chr7	90212451	90213451	+	933.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52481.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	14.0	22.0	9.0	2.5	10.5	4.5
Merged-chr11-69629009-4	chr11	69628493	69629493	+	933.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3978.0	NM_011814	23879.0	Mm.41930	NM_011814	ENSMUSG00000018765	Fxr2	Fxr2h	fragile X mental retardation, autosomal homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-3004215-1	chr9	3003715	3004715	+	933.6666869999999	f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	34528.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30010413-4	chr16	30009919	30010919	+	933.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033631, intron 1 of 2)	intron (NR_033631, intron 1 of 2)	1752.0	NR_033631	100043102.0	Mm.30797	NR_033631	ENSMUSG00000097184	4632428C04Rik	Gm4231	RIKEN cDNA 4632428C04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-40423728-4	chr8	40423228	40424228	+	933.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357249)	promoter-TSS (NM_001357249)	-87.0	NM_178395	70546.0	Mm.34326	NM_178395	ENSMUSG00000039470	Zdhhc2	5730415P04Rik|6430583A19Rik|DHHC-2	zinc finger, DHHC domain containing 2	protein-coding	1.0	0.0	1.5	0.0	0.0	6.0
Merged-chr5-120498679-3	chr5	120498190	120499190	+	933.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023625, intron 2 of 11)	ID_B1|SINE|B4	4933.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	1.5	3.0	0.5	3.0	3.0	0.5
Merged-chr12-52372965-3	chr12	52372472	52373472	+	933.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	107637.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4803581-3	chr11	4803094	4804094	+	933.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010898, intron 7 of 15)	intron (NM_010898, intron 7 of 15)	29541.0	NM_001252253	18016.0	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	2.5	1.5	1.5	1.5	2.0	5.0
Merged-chr9-54467726-4	chr9	54467236	54468236	+	933.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172771, intron 6 of 43)	L2a|LINE|L2	33890.0	NM_172771	235380.0	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79927423-4	chr10	79927002	79928002	+	933.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001288625, intron 1 of 8)	CpG	161.0	NM_001288625	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86883258-9	chr12	86882774	86883774	+	933.648132	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145836, exon 1 of 1)	exon (NM_145836, exon 1 of 1)	1540.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93217258-4	chr2	93216779	93217779	+	933.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183180, intron 5 of 9)	intron (NM_183180, intron 5 of 9)	29731.0	NM_001025246	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134572979-4	chr5	134572415	134573415	+	933.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_106087)	TTS (NR_106087)	839.0	NR_106087	102465708.0		NR_106087	ENSMUSG00000106323	Mir7228	mmu-mir-7228	microRNA 7228	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-73591598-4	chr16	73591071	73592071	+	933.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	750496.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136554977-4	chr6	136554463	136555463	+	933.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	36112.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	12.0	91.0	58.5	47.5	144.0	92.5
Merged-chr17-88581726-4	chr17	88581248	88582248	+	933.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028658, intron 19 of 21)	intron (NM_028658, intron 19 of 21)	-44807.0	NM_029858	77057.0	Mm.482203	NM_029858	ENSMUSG00000033855	Ston1	4921524J06Rik|C86231|Salf|Sblf	stonin 1	protein-coding	0.0	0.0	1.5	1.5	4.0	2.0
Merged-chr11-108261947-4	chr11	108261464	108262464	+	933.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	L1MB2|LINE|L1	81924.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0.0	0.0	0.0	0.0	1.0	1.0
Merged-chr5-105685963-4	chr5	105685415	105686415	+	933.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-14054.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.0	6.0	0.0	1.0	2.5	4.0
Merged-chr18-24470863-4	chr18	24470387	24471387	+	933.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026529)	promoter-TSS (NM_026529)	16.0	NM_026529	68046.0	Mm.276574	NM_026529	ENSMUSG00000024273	2700062C07Rik	AI195775|C87515	RIKEN cDNA 2700062C07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58888141-4	chr15	58887619	58888619	+	933.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1110.0	NM_175226	75841.0	Mm.4537	NM_175226	ENSMUSG00000037075	Rnf139	4930555P18Rik	ring finger protein 139	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105500081-4	chr8	105499565	105500565	+	933.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-3163.0	NM_175160	70796.0	Mm.100917	NM_175160	ENSMUSG00000039199	Zdhhc1	4432412D04Rik|DHHC-1	zinc finger, DHHC domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43741681-3	chr4	43741193	43742193	+	933.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10166.0	NR_040667	319973.0	Mm.233955	NR_040667		A630077J23Rik	-	RIKEN cDNA A630077J23 gene	ncRNA	13.0	25.0	33.5	29.5	49.0	64.0
Merged-chr14-121318446-3	chr14	121317960	121318960	+	933.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145465, intron 2 of 10)	intron (NM_145465, intron 2 of 10)	60770.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0.0	2.0	4.0	0.0	0.0	2.0
Merged-chr12-85123790-4	chr12	85123275	85124275	+	933.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030225, exon 10 of 15)	exon (NM_030225, exon 10 of 15)	12942.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137883914-4	chr4	137883388	137884388	+	933.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	21651.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	16.5	33.0	13.5	3.5	23.5	7.0
Merged-chr7-98872148-3	chr7	98871646	98872646	+	933.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33301.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr5-105706822-3	chr5	105706341	105707341	+	933.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	6031.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	11.5	4.5	5.0	11.5	4.0	5.0
Merged-chr1-88705308-4	chr1	88704782	88705782	+	933.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3091.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134552223-4	chr4	134551726	134552726	+	933.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029100)	promoter-TSS (NM_029100)	-60.0	NM_029100	74777.0	Mm.29773	NM_029100	ENSMUSG00000050989	Selenon	1110019I12Rik|AI414492|SelN|Sepn1	selenoprotein N	protein-coding	7.5	4.5	12.0	8.0	10.0	12.0
Merged-chr1-170582537-4	chr1	170582037	170583037	+	933.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 1 of 9)	MTE2b|LTR|ERVL-MaLR	7312.0	NM_001109985	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-8686317-4	chr16	8685812	8686812	+	933.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5542.0	NM_001324517	436336.0	Mm.357666	NM_001324517		Gm5767	EG436336|Gm43786	predicted gene 5767	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-195012736-4	chr1	195012244	195013244	+	933.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4655.0	NR_015566	320977.0	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110464114-4	chr11	110463599	110464599	+	933.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	MTE2a|LTR|ERVL-MaLR	-14416.0	NM_001356347	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	9.0	6.0	2.5	5.0	3.0	2.0
Merged-chr10-4601785-4	chr10	4601223	4602223	+	933.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10266.0	NM_001302532	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-123990023-3	chr14	123989494	123990494	+	933.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045479, intron 1 of 3)	intron (NR_045479, intron 1 of 3)	2359.0	NR_045479	69393.0	Mm.491348	NR_045479	ENSMUSG00000099994	1700024B18Rik	-	RIKEN cDNA 1700024B18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27235459-2	chr3	27234959	27235959	+	933.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 3 of 4)	intron (NM_178772, intron 3 of 4)	52455.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55841289-2	chr16	55840789	55841789	+	933.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001134457, exon 6 of 6)	3' UTR (NM_001134457, exon 6 of 6)	-2648.0	NM_001159395	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34188229-2	chr17	34187729	34188729	+	933.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013585)	promoter-TSS (NM_013585)	673.0	NM_013683	21354.0	Mm.482076	NM_013683	ENSMUSG00000037321	Tap1	ABC17|APT1|Abcb2|Ham-1|Ham1|MTP1|PSF1|RING4|TAP|Tap-1|Y3	transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	1.5	42.5	7.0	18.0	13.0	13.0
Merged-chr8-107505251-3	chr8	107504749	107505749	+	933.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025830, intron 6 of 23)	intron (NM_025830, intron 6 of 23)	-45995.0	NR_029553	387158.0		NR_029553	ENSMUSG00000065439	Mir140	Mirn140|mir-140|mmu-mir-140	microRNA 140	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119420583-2	chr11	119420083	119421083	+	933.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30111.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	13.5	7.5	8.0	6.0	5.5	6.5
Merged-chr12-55403830-2	chr12	55403330	55404330	+	933.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011968, intron 1 of 6)	B4A|SINE|B4	5005.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-137416225-3	chr7	137415725	137416725	+	933.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEz-int|LTR|ERVK	-5469.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103720809-4	chr14	103720295	103721295	+	933.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21363.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-8777875-3	chr13	8777371	8778371	+	933.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93173.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170510776-3	chr1	170510262	170511262	+	933.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 2 of 9)	MIRc|SINE|MIR	46348.0	NM_027528	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154019670-4	chr4	154019166	154020166	+	933.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163722)	TTS (NM_001163722)	6378.0	NM_001163722	68859.0	Mm.477488	NM_001033144	ENSMUSG00000078350	Smim1	0610011H04Rik|1190007F08Rik|2700009I11Rik	small integral membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140507143-2	chr5	140506643	140507643	+	933.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021528, intron 1 of 1)	intron (NM_021528, intron 1 of 1)	1534.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4159210-2	chr11	4158710	4159710	+	933.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177616, intron 1 of 12)	ORR1A3-int|LTR|ERVL-MaLR	1083.0	NM_177616	216516.0	Mm.386854	NM_177616	ENSMUSG00000051427	Ccdc157	4930562D19Rik|mKIAA1656	coiled-coil domain containing 157	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72812843-4	chr5	72812334	72813334	+	933.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	55614.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25636400-2	chr14	25635900	25636900	+	933.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 7 of 23)	intron (NM_183208, intron 7 of 23)	32887.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-177795527-4	chr1	177795022	177796022	+	933.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007422, intron 1 of 12)	(A)n|Simple_repeat|Simple_repeat	987.0	NM_007422	11566.0	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53322843-2	chr19	53322343	53323343	+	933.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	ORR1C1|LTR|ERVL-MaLR	-6570.0	NM_010847	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36215729-2	chr17	36215229	36216229	+	933.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25578.0	NM_008208	15043.0	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8681282-3	chr15	8680764	8681764	+	933.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148938, intron 3 of 9)	intron (NM_148938, intron 3 of 9)	29543.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59302887-2	chr10	59302387	59303387	+	933.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERVK10C-int|LTR|ERVK	-20409.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85514663-2	chr8	85514163	85515163	+	933.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173866, intron 6 of 11)	intron (NM_173866, intron 6 of 11)	22046.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	12.0	9.5	7.5	42.0	39.0	4.0
Merged-chr12-31657612-2	chr12	31657112	31658112	+	933.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163126, intron 1 of 22)	RMER1B|Other|Other	2743.0	NM_001163126	238123.0	Mm.173068	NM_001163126	ENSMUSG00000035933	Cog5	5430405C01Rik|C87247|D18362|GOLTC1|GTC90	component of oligomeric golgi complex 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-40294490-4	chr8	40293980	40294980	+	933.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7527.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	0.0	13.0	13.5	11.5	39.5	13.0
Merged-chr1-157536722-2	chr1	157536222	157537222	+	933.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159986, intron 8 of 25)	intron (NM_001159986, intron 8 of 25)	10552.0	NM_001159986	89867.0	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding	6.5	10.0	0.0	4.5	6.0	3.5
Merged-chr5-117494414-7	chr5	117493873	117494873	+	933.480957	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	80371.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	42.0	80.5	85.0	44.5	97.0	128.5
Merged-chr18-54848913-4	chr18	54848418	54849418	+	933.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	141262.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152913240-5	chr3	152912706	152913706	+	933.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	69001.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89807349-4	chr3	89806834	89807834	+	933.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-24036.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191333120-4	chr1	191332612	191333612	+	933.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025864, intron 2 of 7)	L1M2|LINE|L1	7147.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	8.5	9.0	11.0	0.0	2.0	4.5
Merged-chr16-26035723-4	chr16	26035202	26036202	+	933.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173379, intron 1 of 14)	intron (NM_173379, intron 1 of 14)	70082.0	NM_173379	210530.0	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107738214-3	chr9	107737703	107738703	+	933.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27728.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr9-111495881-3	chr9	111495393	111496393	+	933.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	56812.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	0.0	5.0	1.0	0.0	5.0	1.0
Merged-chr1-132316835-5	chr1	132316270	132317270	+	933.4400019999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195025, intron 1 of 7)	intron (NM_001195025, intron 1 of 7)	645.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-153968746-4	chr3	153968260	153969260	+	933.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4676.0	NM_001081263	242259.0	Mm.239962	NM_001081263	ENSMUSG00000028360	Slc44a5	AA117069|Gm422	solute carrier family 44, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-138258123-4	chr2	138257636	138258636	+	933.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025431, intron 1 of 4)	intron (NM_001025431, intron 1 of 4)	1552.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-52082061-4	chr16	52081590	52082590	+	933.4249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	50541.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108549682-4	chr6	108549120	108550120	+	933.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 61 of 61)	(TG)n|Simple_repeat|Simple_repeat	59877.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.0	0.0	2.5	0.0	3.0	1.5
Merged-chr9-58247290-4	chr9	58246826	58247826	+	933.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001311088, exon 2 of 9)	exon (NM_001311088, exon 2 of 9)	2460.0	NM_008884	18854.0	Mm.392123	NM_008884	ENSMUSG00000036986	Pml	1200009E24Rik|AI661194|Trim19	promyelocytic leukemia	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-6055826-4	chr18	6055330	6056330	+	933.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029277, intron 7 of 17)	intron (NM_029277, intron 7 of 17)	80268.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	8.0	1.5	3.5	12.0	7.0	0.0
Merged-chr1-86501232-2	chr1	86500732	86501732	+	933.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25325.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8496883-17	chr12	8496406	8497406	+	933.397034	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007483)	TTS (NM_007483)	3103.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	6.0	29.5	9.5	10.0	26.5	14.5
Merged-chr14-64633590-4	chr14	64633090	64634090	+	933.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18941.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	0.0	1.0	1.5	1.0	2.5	3.5
Merged-chr9-100507756-4	chr9	100507254	100508254	+	933.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324530)	promoter-TSS (NM_001324530)	-898.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	18.0	40.5	14.5	18.0	40.0	15.0
Merged-chr6-117874977-4	chr6	117874446	117875446	+	933.3624880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12065.0	NM_001001792	22685.0	Mm.249661	NM_008616	ENSMUSG00000042097	Zfp239	Mok-2|Mok2|Znf239	zinc finger protein 239	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66895088-2	chr9	66894588	66895588	+	933.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	24617.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59978365-2	chr10	59977865	59978865	+	933.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24440.0	NM_026937	69090.0	Mm.155839	NM_026937	ENSMUSG00000044475	Ascc1	1810015P09Rik|AI550520|ASC1p50|CGI-18	activating signal cointegrator 1 complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95820333-2	chr3	95819835	95820835	+	933.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1382.0	NM_001081293	75137.0	Mm.196275	NM_028328	ENSMUSG00000028106	Rprd2	2810036A19Rik|4930535B03Rik|6720469I21Rik|AL022841|AL022940|AU021304|BB077382|mKIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191313362-2	chr1	191312884	191313884	+	933.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025424, intron 1 of 3)	intron (NM_025424, intron 1 of 3)	4734.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	28.5	116.0	68.5	66.5	72.5	70.0
Merged-chr8-13585485-2	chr8	13584985	13585985	+	933.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 13 of 23)	intron (NM_009025, intron 13 of 23)	-23024.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105566932-3	chr8	105566419	105567419	+	933.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013477)	promoter-TSS (NM_013477)	-855.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-42282748-3	chr13	42282248	42283248	+	933.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18728.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-177338871-3	chr1	177338381	177339381	+	933.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90114.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4548595-3	chr2	4548101	4549101	+	933.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 11 of 23)	intron (NM_001177843, intron 11 of 23)	-11153.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100406273-3	chr15	100405737	100406737	+	933.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008732, intron 6 of 16)	intron (NM_008732, intron 6 of 16)	16818.0	NM_001146161	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	19.5	85.0	114.5	77.5	139.0	104.5
Merged-chr1-92957210-3	chr1	92956698	92957698	+	933.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-6608.0	NR_015525	100037260.0	Mm.442236	NR_015525	ENSMUSG00000100632	9430060I03Rik	-	RIKEN cDNA 9430060I03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122693859-3	chr7	122693346	122694346	+	933.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019430, intron 1 of 3)	intron (NM_019430, intron 1 of 3)	22102.0	NM_019430	54376.0	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5729964-5	chr17	5729442	5730442	+	933.320007	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 7 of 8)	intron (NM_146073, intron 7 of 8)	-68715.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73176732-4	chr15	73176238	73177238	+	933.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	8209.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	3.5	1.0	3.0	3.5	1.0	2.5
Merged-chr8-111177961-4	chr8	111177457	111178457	+	933.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 11 of 25)	intron (NM_009149, intron 11 of 25)	-32459.0	NR_040364	434350.0	Mm.442061	NR_040363		9430091E24Rik	-	RIKEN cDNA 9430091E24 gene	ncRNA	14.0	19.0	4.5	14.0	18.5	5.0
Merged-chr5-121546755-4	chr5	121546257	121547257	+	933.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010765)	promoter-TSS (NM_010765)	-865.0	NM_010765	17165.0	Mm.272206	NM_010765	ENSMUSG00000029454	Mapkapk5	MK5|PRAK	MAP kinase-activated protein kinase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120823469-5	chr11	120822965	120823965	+	933.2999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007988, intron 1 of 42)	intron (NM_007988, intron 1 of 42)	1082.0	NM_007988	14104.0	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107098879-4	chr3	107098380	107099380	+	933.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2687.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	14.5	47.0	45.0	14.5	50.0	46.5
Merged-chr6-89296578-4	chr6	89296113	89297113	+	933.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10888.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8595641-4	chr3	8595131	8596131	+	933.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32420.0	NR_153352	102635065.0		NR_153352	ENSMUSG00000104102	Gm32496	-	predicted gene, 32496	ncRNA	3.5	8.0	3.5	7.0	15.0	7.5
Merged-chr17-5765949-4	chr17	5765457	5766457	+	933.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32700.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-129533889-4	chr3	129533345	129534345	+	933.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130450, intron 2 of 4)	CpG	-1457.0	NR_153368	102639747.0	Mm.393257	NR_153368		Gm35986	-	predicted gene, 35986	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83603641-3	chr11	83603125	83604125	+	933.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 2 of 8)	MLT1G|LTR|ERVL-MaLR	-10538.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-192771163-2	chr1	192770663	192771663	+	933.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144881)	promoter-TSS (NM_144881)	56.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	28.0	24.5	44.0	13.0	29.0	16.0
Merged-chr8-79375036-4	chr8	79374559	79375559	+	933.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 1 of 6)	MIRb|SINE|MIR	24409.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88136248-2	chr3	88135748	88136748	+	933.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-6124.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-63625010-4	chr15	63624528	63625528	+	933.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-145420.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	8.0	24.5	18.5	8.0	25.5	24.0
Merged-chr4-71338816-4	chr4	71338326	71339326	+	933.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-803898.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35979341-5	chr2	35978892	35979892	+	933.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029774, exon 1 of 10)	exon (NM_029774, exon 1 of 10)	232.0	NM_029774	74410.0	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74712989-5	chr1	74712432	74713432	+	933.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024264)	promoter-TSS (NM_024264)	-603.0	NM_024264	104086.0	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22807389-5	chr8	22806857	22807857	+	933.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1703.0	NM_001122820	64933.0	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	26.5	55.0	28.0	15.0	37.5	28.5
Merged-chr9-66939041-4	chr9	66938541	66939541	+	933.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7045.0	NM_001311101	67941.0	Mm.30120	NM_026467	ENSMUSG00000036781	Rps27l	1810034D23Rik	ribosomal protein S27-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66190503-4	chr14	66189992	66190992	+	933.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 2 of 30)	intron (NM_001162366, intron 2 of 30)	23332.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80084700-3	chr7	80084168	80085168	+	933.177795	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 2 of 4)	intron (NM_175433, intron 2 of 4)	-9411.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	10.0	10.5	4.5	2.0	11.5	5.5
Merged-chr9-57862056-4	chr9	57861545	57862545	+	933.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27811.0	NM_019689	56380.0	Mm.425588	NM_019689	ENSMUSG00000004661	Arid3b	Bdp|Dri2	AT rich interactive domain 3B (BRIGHT-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170055689-3	chr2	170055187	170056187	+	933.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15091.0	NR_033634	100043910.0	Mm.468546	NR_033632	ENSMUSG00000097065	A630075F10Rik	4831414D02|Gm4722	RIKEN cDNA A630075F10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106204685-4	chr9	106204196	106205196	+	933.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011876, intron 1 of 8)	intron (NM_011876, intron 1 of 8)	1588.0	NM_011876	23999.0	Mm.274346	NM_011876	ENSMUSG00000023277	Twf2	A6-related|AU014993|Ptk9l|Ptk9r	twinfilin actin binding protein 2	protein-coding	12.0	16.5	7.0	13.5	12.5	12.5
Merged-chr11-34001899-3	chr11	34001381	34002381	+	933.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-8688.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	0.5	4.5	2.0	2.0	5.5	2.0
Merged-chr6-57743530-4	chr6	57743027	57744027	+	933.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	41072.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-70536059-4	chr4	70535540	70536540	+	933.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1112.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21613289-3	chr14	21612776	21613776	+	933.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017479, intron 3 of 16)	intron (NM_017479, intron 3 of 16)	101300.0	NM_001013826	435391.0	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120113655-4	chr10	120113164	120114164	+	933.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080446)	promoter-TSS (NM_080446)	-699.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94225573-2	chr10	94225074	94226074	+	933.125	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	26565.0	NM_025551	66414.0	Mm.27886	NM_025551	ENSMUSG00000020022	Ndufa12	2410011G03Rik|AW112974	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12	protein-coding	12.5	4.0	6.5	6.0	20.0	12.0
Merged-chr2-152707740-4	chr2	152707187	152708187	+	933.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001159551, exon 13 of 13)	3' UTR (NM_001159551, exon 13 of 13)	20539.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	12.0	9.5	17.0	0.0	1.5	1.0
Merged-chr10-117330803-4	chr10	117330345	117331345	+	933.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37977.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	0.0	0.0	1.5	4.0	4.0	3.0
Merged-chr4-134921004-2	chr4	134920504	134921504	+	933.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2621.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94687880-3	chr10	94687385	94688385	+	933.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029852)	promoter-TSS (NM_029852)	728.0	NR_015524	67723.0	Mm.116284	NR_015524		Cep83os	4932415G12Rik|Ccdc41os1	centrosomal protein 83, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3141123-5	chr11	3140586	3141586	+	933.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 21 of 32)	RMER4A|LTR|ERVK	17065.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147417319-2	chr4	147416799	147417799	+	933.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	-135978.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91545775-4	chr16	91545347	91546347	+	933.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1247.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	14.0	65.0	36.5	24.0	32.5	22.5
Merged-chr5-31221674-2	chr5	31221174	31222174	+	933.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1129.0	NM_008014	14208.0	Mm.14501	NM_008014	ENSMUSG00000029147	Ppm1g	AI385652|Fin13	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-24894760-4	chr6	24894267	24895267	+	933.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36770.0	NM_028957	74468.0	Mm.251601	NM_028957	ENSMUSG00000029678	Hyal5	4933439A12Rik	hyaluronoglucosaminidase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22511451-4	chr16	22510948	22511948	+	933.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_130988)	promoter-TSS (NR_130988)	-32.0	NR_130988	78082.0	Mm.243927	NR_130988	ENSMUSG00000089874	9230117E06Rik	-	RIKEN cDNA 9230117E06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171412256-4	chr1	171411759	171412759	+	933.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009480, intron 1 of 9)	intron (NM_009480, intron 1 of 9)	578.0	NM_009480	22278.0	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	59.0	137.0	90.0	49.0	98.5	70.5
Merged-chr18-39639005-4	chr18	39638488	39639488	+	933.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4A|LINE|L1	-134509.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105516200-6	chr8	105515734	105516734	+	933.055542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2512.0	NM_008289	15484.0	Mm.5079	NM_008289	ENSMUSG00000031891	Hsd11b2	11HSD2	hydroxysteroid 11-beta dehydrogenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95676967-4	chr3	95676488	95677488	+	933.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301705, intron 17 of 17)	intron (NM_001301705, intron 17 of 17)	10929.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43563494-4	chr7	43562970	43563970	+	933.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008549, intron 1 of 4)	intron (NM_001008549, intron 1 of 4)	1100.0	NM_001008549	210104.0	Mm.333821	NM_001008549	ENSMUSG00000056592	Zfp658	-	zinc finger protein 658	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-68381333-4	chr2	68380834	68381834	+	933.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 5 of 17)	intron (NM_016866, intron 5 of 17)	90647.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122743114-4	chr2	122742598	122743598	+	933.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019788, intron 2 of 4)	intron (NM_019788, intron 2 of 4)	4593.0	NM_019788	18457.0	Mm.268921	NM_019788	ENSMUSG00000005804	Bloc1s6	BLOC-1|Pldn|Stx13bp1|pa	biogenesis of lysosomal organelles complex-1, subunit 6, pallidin	protein-coding	5.0	30.0	38.0	12.0	28.5	24.5
Merged-chr12-82276032-4	chr12	82275531	82276531	+	933.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 3 of 23)	intron (NM_001167983, intron 3 of 23)	-35318.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-53464702-2	chr3	53464202	53465202	+	933.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173382, intron 1 of 12)	intron (NM_173382, intron 1 of 12)	885.0	NM_173382	212127.0	Mm.491292	NM_173382	ENSMUSG00000049504	Proser1	2810046L04Rik|9330161F11	proline and serine rich 1	protein-coding	0.0	0.0	0.5	0.0	1.0	0.0
Merged-chr3-88325760-2	chr3	88325260	88326260	+	933.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_020003, exon 2 of 6)	exon (NM_020003, exon 2 of 6)	737.0	NM_020003	56700.0	Mm.439922	NM_020003	ENSMUSG00000001418	Glmp	0610031J06Rik|AB027141|NCU-G1	glycosylated lysosomal membrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112116217-4	chr13	112115707	112116707	+	933.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-172244.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0.0	0.0	2.5	0.0	0.0	0.0
Merged-chr18-15595144-2	chr18	15594644	15595644	+	933.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199055, intron 2 of 3)	RLTR20B3|LTR|ERVK	122902.0	NM_199055	71367.0	Mm.329304	NM_199055	ENSMUSG00000047161	Chst9	5430438D01Rik	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-144909955-2	chr7	144909455	144910455	+	933.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5145.0	NM_001357868	72284.0	Mm.273049	NM_028184	ENSMUSG00000031072	Oraov1	2210010N10Rik|TAOS1	oral cancer overexpressed 1	protein-coding	21.5	17.5	9.0	1.0	5.0	9.5
Merged-chr10-60531514-2	chr10	60531014	60532014	+	933.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 8 of 68)	intron (NM_001252635, intron 8 of 68)	131788.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143270051-4	chr5	143269550	143270550	+	933.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017467)	promoter-TSS (NM_017467)	-28.0	NM_017467	54201.0	Mm.6666	NM_017467	ENSMUSG00000046658	Zfp316	Emzf1|Mzf3|Znf316	zinc finger protein 316	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130146061-2	chr5	130145561	130146561	+	933.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172509, intron 1 of 3)	intron (NM_172509, intron 1 of 3)	1173.0	NM_172509	212919.0	Mm.55812	NM_172509	ENSMUSG00000034110	Kctd7	4932409E18|9430010P06Rik	potassium channel tetramerisation domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119049649-2	chr11	119049185	119050185	+	933.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8772.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	2.0	0.0	3.5	0.0	1.5	3.5
Merged-chr5-149454439-2	chr5	149453939	149454939	+	933.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029464, intron 3 of 6)	intron (NM_029464, intron 3 of 6)	14779.0	NM_001310765	75860.0	Mm.159605	NM_029464	ENSMUSG00000029660	Tex26	4930588N13Rik	testis expressed 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-121441230-3	chr1	121440736	121441736	+	933.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029955, intron 3 of 23)	intron (NM_029955, intron 3 of 23)	10169.0	NM_029955	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	6.5	10.5	9.5	3.5	15.5	6.0
Merged-chr11-120795854-2	chr11	120795354	120796354	+	933.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026824, intron 1 of 13)	intron (NM_026824, intron 1 of 13)	541.0	NM_026824	68730.0	Mm.180622	NM_026824	ENSMUSG00000025155	Dus1l	1110032N12Rik	dihydrouridine synthase 1-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57858559-2	chr6	57858059	57859059	+	933.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-14102.0	NM_134183	171201.0	Mm.377179	NM_134183	ENSMUSG00000115343	Vmn1r21	V1rc28	vomeronasal 1 receptor 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4122729-4	chr11	4122247	4123247	+	933.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4018.0	NM_144520	67815.0	Mm.253922	NM_144520	ENSMUSG00000003585	Sec14l2	1300013M05Rik|Spf|TAP	SEC14-like lipid binding 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75678646-2	chr11	75678146	75679146	+	933.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277221)	promoter-TSS (NM_001277221)	-613.0	NM_001277219	12928.0	Mm.280125	NM_133656	ENSMUSG00000017776	Crk	Crk-I|Crk-II|Crk-III|Crk3|CrkIII|Crko|c-Crk|p38	v-crk avian sarcoma virus CT10 oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6289865-2	chr19	6289365	6290365	+	933.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	12969.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-36224781-4	chr2	36224298	36225298	+	933.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	-5628.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66114801-4	chr5	66114308	66115308	+	933.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-16629.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	28.0	73.5	41.5	39.5	70.5	55.5
Merged-chr11-100705190-2	chr11	100704690	100705690	+	933.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030150)	promoter-TSS (NM_030150)	-919.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-10896222-2	chr8	10895722	10896722	+	933.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3700.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-33263906-3	chr15	33263405	33264405	+	933.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176073, intron 3 of 7)	intron (NM_176073, intron 3 of 7)	142034.0	NR_033608	73486.0	Mm.483393	NM_028551	ENSMUSG00000058101	1700084J12Rik	-	ribosomal protein L7-like 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69485823-4	chr12	69485330	69486330	+	933.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10280.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	7.0	13.5	13.0	6.0	45.5	13.5
Merged-chr9-47647746-3	chr9	47647246	47648246	+	933.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	117394.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	2.5	9.5	7.5	11.0	6.0	17.0
Merged-chr2-93180349-2	chr2	93179849	93180849	+	933.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7199.0	NM_001356536	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61466981-2	chr10	61466481	61467481	+	933.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8852.0	NM_153542	216011.0	Mm.136116	NM_153542	ENSMUSG00000037151	Lrrc20	BC036304	leucine rich repeat containing 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5846196-4	chr17	5845700	5846700	+	933.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025664, intron 1 of 17)	L1MEd|LINE|L1	4820.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59735280-1	chr10	59734780	59735780	+	933.0	f0_balb.idr	intron (NM_001359267, intron 3 of 11)	RSINE1|SINE|B4	32717.0	NM_001291443	216001.0	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-97241593-4	chr10	97241059	97242059	+	933.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-181919.0	NR_039547	100628616.0		NR_039547	ENSMUSG00000105557	Mir3966	mmu-mir-3966|mu-mir-3966	microRNA 3966	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44074567-2	chr9	44074067	44075067	+	933.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016808, intron 1 of 12)	intron (NM_016808, intron 1 of 12)	5138.0	NM_016808	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21711511-2	chr13	21711011	21712011	+	933.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4632.0	NM_178199	319185.0		NM_178199	ENSMUSG00000094338	Hist1h2bl	H2b-291a	histone cluster 1, H2bl	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55292585-2	chr19	55292085	55293085	+	933.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027976, intron 17 of 21)	B1_Mus1|SINE|Alu	23451.0	NM_001360595	66980.0	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6	zinc finger, DHHC domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79024537-1	chr12	79024037	79025037	+	933.0	f1_c57bl6.idr	Intergenic	Intergenic	-4626.0	NM_181073	211945.0	Mm.478321	NM_181073	ENSMUSG00000060716	Plekhh1	AV308913|C77772|D630024D12Rik|mKIAA1200	pleckstrin homology domain containing, family H (with MyTH4 domain) member 1	protein-coding	7.0	6.0	0.0	3.5	4.0	1.0
Merged-chr1-136127568-2	chr1	136127068	136128068	+	933.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_046167)	TTS (NR_046167)	3615.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-74889021-2	chr14	74888521	74889521	+	933.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	58856.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103738431-4	chr3	103737933	103738933	+	933.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133859)	promoter-TSS (NM_133859)	-432.0	NM_133859	99543.0	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	3.0	0.0	0.0	1.0	0.0	1.0
Merged-chr11-119253598-1	chr11	119253098	119254098	+	933.0	f1_balb.idr	intron (NM_175430, intron 14 of 18)	intron (NM_175430, intron 14 of 18)	-14365.0	NM_001159324	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	6.5	0.0	3.0	0.0	0.0	0.0
Merged-chr5-123257732-2	chr5	123257232	123258232	+	933.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29542.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	1.0	0.0	2.0	1.0	0.0	0.5
Merged-chr8-90933145-4	chr8	90932655	90933655	+	933.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001310530, exon 1 of 38)	exon (NM_001310530, exon 1 of 38)	906.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	11.5	9.5	4.0	7.5	13.5	22.0
Merged-chr18-38208412-2	chr18	38207912	38208912	+	933.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029357, intron 1 of 2)	intron (NM_029357, intron 1 of 2)	1350.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0.0	1.5	0.5	0.0	1.5	0.5
Merged-chr2-167477228-4	chr2	167476709	167477709	+	932.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_148929)	TTS (NM_148929)	-15436.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-107455427-4	chr8	107454928	107455928	+	932.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025830, intron 2 of 23)	intron (NM_025830, intron 2 of 23)	19030.0	NM_025830	66894.0	Mm.390058	NM_025830	ENSMUSG00000031930	Wwp2	1300010O06Rik|AA690238|AIP2|AW554328	WW domain containing E3 ubiquitin protein ligase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41104618-4	chr19	41104104	41105104	+	932.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011904, intron 12 of 20)	B4|SINE|B4	-27491.0	NM_153520	226115.0	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	8.0	19.5	20.5	5.5	8.5	17.5
Merged-chr7-44527701-4	chr7	44527180	44528180	+	932.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019866, exon 6 of 6)	3' UTR (NM_019866, exon 6 of 6)	-3011.0	NM_146189	233199.0	Mm.358888	NM_146189	ENSMUSG00000038670	Mybpc2	-	myosin binding protein C, fast-type	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-64311858-4	chr14	64311386	64312386	+	932.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253714, intron 1 of 4)	intron (NM_001253714, intron 1 of 4)	105070.0	NM_001253716	110265.0	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-154118572-4	chr1	154118071	154119071	+	932.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82616.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163758364-3	chr2	163757859	163758859	+	932.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8120.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	18.5	17.5	22.0	23.0	25.0	23.0
Merged-chr4-12241105-4	chr4	12240609	12241609	+	932.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69094.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-94283891-4	chr6	94283318	94284318	+	932.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286784)	promoter-TSS (NM_001286784)	99.0	NM_010367	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.0	2.5	1.5	3.5	7.5	2.0
Merged-chr8-11001350-4	chr8	11000838	11001838	+	932.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081212, intron 1 of 1)	intron (NM_001081212, intron 1 of 1)	-6512.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62228500-4	chr18	62227973	62228973	+	932.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48373.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	9.5	32.0	18.0	5.0	17.5	40.0
Merged-chr16-52932169-4	chr16	52931671	52932671	+	932.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-116427.0	NR_040495	73820.0	Mm.60493	NR_040495		4930404A05Rik	-	RIKEN cDNA 4930404A05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27033008-4	chr17	27032518	27033518	+	932.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027544, intron 4 of 5)	intron (NM_027544, intron 4 of 5)	3759.0	NM_027544	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146758119-4	chr5	146757621	146758621	+	932.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 3 of 8)	intron (NM_011669, intron 3 of 8)	36835.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97450916-4	chr6	97450318	97451318	+	932.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	L1_Mus1|LINE|L1	8468.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-153262938-4	chr3	153262438	153263438	+	932.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 3 of 4)	intron (NM_011372, intron 3 of 4)	35711.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-144245065-4	chr1	144244560	144245560	+	932.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_015811, exon 5 of 5)	3' UTR (NM_015811, exon 5 of 5)	4044.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-108252123-4	chr11	108251607	108252607	+	932.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	91781.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65001138-3	chr9	65000612	65001612	+	932.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021345, intron 5 of 10)	intron (NM_021345, intron 5 of 10)	20605.0	NM_021345	57874.0	Mm.308180	NM_021345	ENSMUSG00000033629	Hacd3	4930523M17Rik|AW742319|B-ind1|Hcad3|Hspc121|Ptplad1	3-hydroxyacyl-CoA dehydratase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79137100-3	chr12	79136593	79137593	+	932.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009705, intron 2 of 7)	L2b|LINE|L2	6305.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	5.0	16.5	18.5	16.0	58.0	26.0
Merged-chr8-13758571-3	chr8	13758037	13759037	+	932.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357247, intron 1 of 16)	intron (NM_001357247, intron 1 of 16)	881.0	NM_001357247	69957.0	Mm.182412	NM_027276	ENSMUSG00000038416	Cdc16	2700071J12Rik|2810431D22Rik|APC6	CDC16 cell division cycle 16	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr17-36187761-4	chr17	36187265	36188265	+	932.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008208, intron 3 of 5)	intron (NM_008208, intron 3 of 5)	2386.0	NM_008208	15043.0	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67223027-4	chr10	67222529	67223529	+	932.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 8 of 25)	intron (NM_207221, intron 8 of 25)	37279.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79798430-4	chr10	79797928	79798928	+	932.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023128, intron 1 of 8)	MTE2b|LTR|ERVL-MaLR	4856.0	NM_001161747	18483.0	Mm.34650	NM_023128	ENSMUSG00000035863	Palm	-	paralemmin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-59555195-4	chr14	59554684	59555684	+	932.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	42775.0	NM_001168537	71891.0	Mm.439850	NM_027986	ENSMUSG00000021982	Cdadc1	2310010M10Rik|AI449174|AI463398|BB130816|NYD-SP15	cytidine and dCMP deaminase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-103680525-4	chr5	103680025	103681025	+	932.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	-24793.0	NM_001163550	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-154258780-4	chr1	154258274	154259274	+	932.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_108050, intron 1 of 2)	intron (NR_108050, intron 1 of 2)	-1868.0	NR_040629	78112.0	Mm.401935	NR_040629	ENSMUSG00000099933	4930452N14Rik	-	RIKEN cDNA 4930452N14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43218162-4	chr4	43217654	43218654	+	932.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081413, intron 11 of 39)	intron (NM_001081413, intron 11 of 39)	-49005.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	6.0	8.5	16.5	20.0	33.5	17.0
Merged-chr12-56336065-4	chr12	56335540	56336540	+	932.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145442, intron 6 of 8)	intron (NM_145442, intron 6 of 8)	9854.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-55268754-2	chr15	55268254	55269254	+	932.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38996.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147336041-2	chr4	147335541	147336541	+	932.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	160175.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45337592-2	chr7	45337092	45338092	+	932.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_010473, intron 2 of 5)	intron (NM_010473, intron 2 of 5)	2323.0	NM_010473	15464.0	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-72226377-3	chr1	72225913	72226913	+	932.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	U2|snRNA|snRNA	-14099.0	NM_001357488	381269.0	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-35209775-4	chr13	35209261	35210261	+	932.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_126478)	TTS (NR_126478)	2287.0	NR_126478	75543.0	Mm.489052	NR_126478	ENSMUSG00000113770	1700019C18Rik	-	RIKEN cDNA 1700019C18 gene	ncRNA	0.0	2.5	4.5	0.0	0.0	0.0
Merged-chr9-13525873-4	chr9	13525378	13526378	+	932.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94111.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	5.0	19.0	9.0	11.0	2.0	13.0
Merged-chr13-91517161-4	chr13	91516677	91517677	+	932.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 1 of 15)	ORR1D2|LTR|ERVL-MaLR	56080.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	4.0	6.0	2.0	6.5	5.5	6.0
Merged-chr19-5447727-4	chr19	5447358	5448358	+	932.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010235, exon 1 of 4)	5' UTR (NM_010235, exon 1 of 4)	160.0	NM_010235	14283.0	Mm.6215	NM_010235	ENSMUSG00000024912	Fosl1	AW538199|Fra1|fra-1	fos-like antigen 1	protein-coding	2.5	7.0	0.0	0.0	1.0	0.5
Merged-chr9-61042424-2	chr9	61041924	61042924	+	932.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25355.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-71213868-4	chr9	71213357	71214357	+	932.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110518, intron 2 of 3)	intron (NR_110518, intron 2 of 3)	1384.0	NR_110519	100041660.0	Mm.487231	NR_110518		Gm3458	-	predicted gene 3458	ncRNA	0.0	0.0	8.5	0.0	0.0	0.5
Merged-chr2-156729903-5	chr2	156729431	156730431	+	932.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042487, intron 1 of 6)	intron (NM_001042487, intron 1 of 6)	8652.0	NM_001042487	228836.0	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	DLG associated protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-114210530-1	chr12	114210030	114211030	+	932.7999880000001	f0_balb.idr	Intergenic	Intergenic	258936.0	NR_106062	102465663.0		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	6.0	8.0	1.5	1.5	2.0	3.0
Merged-chr6-5411106-4	chr6	5410571	5411571	+	932.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355662, intron 2 of 4)	intron (NM_001355662, intron 2 of 4)	20661.0	NM_001355662	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	0.0	1.0	0.0	3.0	0.0	0.0
Merged-chr4-11989497-4	chr4	11988996	11989996	+	932.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040577, intron 4 of 4)	intron (NR_040577, intron 4 of 4)	22922.0	NR_040577	100503636.0	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-6940962-4	chr7	6940472	6941472	+	932.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360502, intron 5 of 7)	intron (NM_001360502, intron 5 of 7)	35690.0	NR_036631	116811.0	Mm.381671	NR_036631	ENSMUSG00000108043	Zim3	1700128I23Rik	zinc finger, imprinted 3	ncRNA	1.5	0.0	0.0	1.5	0.0	0.0
Merged-chr1-89078903-4	chr1	89078421	89079421	+	932.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133816, intron 1 of 5)	intron (NM_133816, intron 1 of 5)	8506.0	NM_133816	98402.0	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-5719456-3	chr5	5718945	5719945	+	932.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-24877.0	NM_028734	74051.0	Mm.274956	NM_028734	ENSMUSG00000015653	Steap2	4921538B17Rik|AI930049|AW045895|IPCA-1|IPCA1|PCANAP1|STAMP1|STMP	six transmembrane epithelial antigen of prostate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-11613270-3	chr17	11612775	11613775	+	932.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016694, intron 6 of 11)	intron (NM_016694, intron 6 of 11)	269914.0	NR_045808	52027.0	Mm.442257	NR_045808		D17Ertd648e	-	DNA segment, Chr 17, ERATO Doi 648, expressed	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36920633-4	chr16	36920136	36921136	+	932.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030035, intron 14 of 21)	intron (NM_030035, intron 14 of 21)	-14347.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-103756425-4	chr5	103755961	103756961	+	932.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080798, intron 1 of 19)	intron (NM_001080798, intron 1 of 19)	1888.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-84828385-4	chr11	84827906	84828906	+	932.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046281)	promoter-TSS (NR_046281)	597.0	NM_177564	192970.0	Mm.192213	NM_177564	ENSMUSG00000034449	Dhrs11	-	dehydrogenase/reductase (SDR family) member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-14352767-2	chr14	14352267	14353267	+	932.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008369, intron 10 of 11)	intron (NM_008369, intron 10 of 11)	6272.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	2.0	1.0	0.0	2.0	0.0	0.5
Merged-chr7-102208957-2	chr7	102208457	102209457	+	932.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001287166, intron 1 of 19)	B1_Mur2|SINE|Alu	910.0	NM_001287167	269966.0	Mm.439800	NM_022979	ENSMUSG00000063550	Nup98	4732457F17|AI849286|Nup96	nucleoporin 98	protein-coding	0.5	10.0	9.0	0.0	11.5	6.0
Merged-chr15-97952619-2	chr15	97952119	97953119	+	932.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11610.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122608504-4	chr14	122607994	122608994	+	932.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 6 of 24)	intron (NR_153443, intron 6 of 24)	74166.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86137185-2	chr15	86136711	86137711	+	932.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001205353, exon 19 of 19)	3' UTR (NM_001205353, exon 19 of 19)	-48517.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	2.0	2.0	3.5	0.0	0.5	3.0
Merged-chr5-121220896-2	chr5	121220396	121221396	+	932.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_181421, intron 1 of 75)	CpG	677.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-43388087-4	chr11	43387600	43388600	+	932.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13639.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-60526407-4	chr3	60525916	60526916	+	932.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	25237.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	70.5	194.0	138.0	68.0	132.5	112.5
Merged-chr9-44196567-4	chr9	44196044	44197044	+	932.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 2 of 15)	L1MB5|LINE|L1	37502.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	1.5	4.5	1.0	0.0	1.0	2.5
Merged-chr9-13563679-4	chr9	13563174	13564174	+	932.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56315.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-89718686-4	chr16	89718184	89719184	+	932.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99668.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63437378-5	chr14	63436898	63437898	+	932.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177628, intron 1 of 3)	intron (NM_177628, intron 1 of 3)	1004.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62348353-7	chr4	62347869	62348869	+	932.6904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355385, intron 2 of 27)	intron (NM_001355385, intron 2 of 27)	12227.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82073193-4	chr11	82072706	82073706	+	932.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15374.0	NM_011330	20292.0	Mm.4686	NM_011330	ENSMUSG00000020676	Ccl11	Scya11|eotaxin	chemokine (C-C motif) ligand 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-34111418-4	chr16	34110915	34111915	+	932.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 34 of 59)	L1MB3|LINE|L1	-144377.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-125468143-4	chr1	125467615	125468615	+	932.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32388.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84674021-3	chr12	84673463	84674463	+	932.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24844.0	NM_001033334	627191.0	Mm.152484	NM_001033334	ENSMUSG00000071234	Syndig1l	DSPC1|Gm261|SynDIG2|Tmem90a	synapse differentiation inducing 1 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-22358764-3	chr4	22358268	22359268	+	932.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172988, intron 1 of 8)	intron (NM_172988, intron 1 of 8)	1225.0	NR_104380	269514.0	Mm.40708	NM_172988	ENSMUSG00000040410	Fbxl4	AI836810|FBL4|FBL5	F-box and leucine-rich repeat protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24757982-4	chr13	24757487	24758487	+	932.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020567, intron 2 of 6)	intron (NM_020567, intron 2 of 6)	3950.0	NM_020567	57441.0	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4599950-3	chr12	4599473	4600473	+	932.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198969, intron 1 of 16)	intron (NM_001198969, intron 1 of 16)	6965.0	NM_001198968	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116782812-4	chr11	116782322	116783322	+	932.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CGGGG)n|Simple_repeat|Simple_repeat	-7315.0	NM_011371	20445.0	Mm.436887	NM_011371	ENSMUSG00000009588	St6galnac1	Siat7a	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1	protein-coding	3.5	23.0	11.5	5.5	29.0	16.5
Merged-chr12-111676562-4	chr12	111676068	111677068	+	932.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1537.0	NM_001099792	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-48076888-4	chr4	48076366	48077366	+	932.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015743, intron 7 of 7)	intron (NM_015743, intron 7 of 7)	25620.0	NM_001307989	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-3228361-4	chr15	3227881	3228881	+	932.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42386.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158413453-4	chr2	158412951	158413951	+	932.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291137, intron 1 of 30)	intron (NM_001291137, intron 1 of 30)	3598.0	NM_001291138	228850.0	Mm.398185	NM_177227	ENSMUSG00000027652	Ralgapb	AI507211|B230339M05Rik|p170	Ral GTPase activating protein, beta subunit (non-catalytic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4987444-2	chr11	4986944	4987944	+	932.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243044, intron 1 of 21)	intron (NM_001243044, intron 1 of 21)	620.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	7.0	14.0	15.5	8.0	20.5	18.0
Merged-chr6-67195257-3	chr6	67194764	67195764	+	932.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71715.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143601140-2	chr7	143600640	143601640	+	932.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-1050.0	NM_013742	27267.0	Mm.125659	NM_013742	ENSMUSG00000010755	Cars	CA3	cysteinyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98768510-3	chr13	98767984	98768984	+	932.666626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172591, intron 8 of 25)	intron (NM_172591, intron 8 of 25)	46965.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	9.5	0.5	3.0	6.0	6.5	7.0
Merged-chr2-155818564-2	chr2	155818000	155819000	+	932.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010808)	TTS (NM_010808)	703.0	NR_015528	613262.0	Mm.330707	NR_015528	ENSMUSG00000074649	BC029722	-	cDNA sequence BC029722	ncRNA	21.5	101.5	61.5	28.5	66.5	66.5
Merged-chr10-80699239-2	chr10	80698739	80699739	+	932.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	2581.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32780500-4	chr19	32780026	32781026	+	932.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 2 of 8)	intron (NM_008960, intron 2 of 8)	22949.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44892582-8	chr7	44892077	44893077	+	932.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029365)	promoter-TSS (NM_029365)	-153.0	NM_001331206	75613.0	Mm.157778	NM_029365	ENSMUSG00000002968	Med25	2610034E13Rik|2610529E18Rik|ESTM2	mediator complex subunit 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94304542-4	chr10	94304049	94305049	+	932.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5846.0	NR_033209	215472.0	Mm.255656	NM_174999	ENSMUSG00000053420	Gm4792	E130012K09|EG215472	predicted gene 4792	ncRNA	0.0	0.0	4.0	2.0	9.5	6.5
Merged-chr4-44016320-4	chr4	44015821	44016821	+	932.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080384, intron 2 of 5)	intron (NM_001080384, intron 2 of 5)	3671.0	NM_001290470	12757.0	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44966990-4	chr9	44966509	44967509	+	932.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1409.0	NM_145400	140630.0	Mm.215069	NM_145400	ENSMUSG00000059890	Ube4a	4732444G18Rik|9930123J21Rik|UFD2b	ubiquitination factor E4A	protein-coding	0.0	6.0	14.0	12.5	6.5	5.0
Merged-chr18-62095637-4	chr18	62095066	62096066	+	932.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84415.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0.0	2.5	0.0	6.0	2.0	2.0
Merged-chr14-78725420-3	chr14	78724985	78725985	+	932.609558	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081336, intron 1 of 29)	intron (NM_001081336, intron 1 of 29)	7244.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122724854-4	chr6	122724364	122725364	+	932.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	17299.0	NM_001289828	71950.0	Mm.6047	NM_028016	ENSMUSG00000012396	Nanog	2410002E02Rik|ENK|ecat4	Nanog homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99211143-4	chr10	99210665	99211665	+	932.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC4|LINE|L1	-52066.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116091586-2	chr11	116091086	116092086	+	932.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-4591.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108346069-3	chr3	108345535	108346535	+	932.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019972, intron 13 of 19)	intron (NM_019972, intron 13 of 19)	-18876.0	NM_026831	68753.0	Mm.75201	NM_026831	ENSMUSG00000068745	Mybphl	1110037P11Rik	myosin binding protein H-like	protein-coding	3.0	7.0	8.0	1.5	9.5	4.0
Merged-chr1-20508113-3	chr1	20507611	20508611	+	932.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153179, intron 34 of 66)	intron (NM_153179, intron 34 of 66)	109946.0	NM_153179	241035.0	Mm.249253	NM_153179	ENSMUSG00000043760	Pkhd1	AI118496|AI182499|FPC|Tigm1	polycystic kidney and hepatic disease 1	protein-coding	0.0	1.5	7.0	6.5	0.0	1.0
Merged-chr1-127084102-4	chr1	127083536	127084536	+	932.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120950.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	22.0	43.0	42.0	30.5	30.5	19.5
Merged-chr14-66847298-3	chr14	66846815	66847815	+	932.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009955, intron 3 of 13)	intron (NM_009955, intron 3 of 13)	21285.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	67.0	120.5	66.5	29.5	50.5	22.5
Merged-chr7-125594059-4	chr7	125593538	125594538	+	932.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9391.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	19.5	50.5	26.5	14.5	10.5	7.5
Merged-chr13-113613398-5	chr13	113612839	113613839	+	932.580017	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	5225.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-16071510-4	chr4	16071016	16072016	+	932.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-57628.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55831301-3	chr12	55830825	55831825	+	932.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-5041.0	NM_001037756	52592.0	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84829238-3	chr10	84828740	84829740	+	932.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024918, intron 4 of 17)	ORR1E|LTR|ERVL-MaLR	-8908.0	NM_027689	71137.0	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47842468-4	chr17	47841957	47842957	+	932.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7766.0	NM_001109973	17240.0	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	13.0	11.5	22.0	2.5	12.5	12.5
Merged-chr1-82816191-4	chr1	82815676	82816676	+	932.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23284.0	NM_010472	15463.0	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63411938-8	chr14	63411430	63412430	+	932.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007549, intron 1 of 12)	intron (NM_007549, intron 1 of 12)	5257.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-68879811-4	chr2	68879302	68880302	+	932.537476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	(TG)n|Simple_repeat|Simple_repeat	18361.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32447835-4	chr2	32447343	32448343	+	932.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146118, intron 1 of 10)	intron (NM_146118, intron 1 of 10)	-2614.0	NM_194335	71254.0	Mm.102341	NM_194335	ENSMUSG00000039164	Naif1	2310007O20Rik|4933440H19Rik	nuclear apoptosis inducing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-39545021-4	chr7	39544555	39545555	+	932.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27289.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	82.5	184.5	148.0	38.0	127.0	91.5
Merged-chr17-24206087-2	chr17	24205573	24206573	+	932.5	f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_173186)	promoter-TSS (NM_173186)	-511.0	NM_001163850	224617.0	Mm.301585	NM_173186	ENSMUSG00000036473	Tbc1d24	9630033P11|C530046L02Rik|mKIAA1171	TBC1 domain family, member 24	protein-coding	5.5	42.0	24.0	16.0	30.0	21.5
Merged-chr2-180727781-2	chr2	180727281	180728281	+	932.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183161, intron 1 of 12)	intron (NM_183161, intron 1 of 12)	2442.0	NM_183161	228993.0	Mm.87189	NM_183161	ENSMUSG00000023393	Slc17a9	1700019H03Rik|BC019537|Vnut	solute carrier family 17, member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-58940661-1	chr2	58940161	58941161	+	932.5	f0_balb.idr	intron (NM_001362394, intron 9 of 13)	intron (NM_001362394, intron 9 of 13)	185477.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128245233-2	chr7	128244733	128245733	+	932.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_146205)	TTS (NM_146205)	-1579.0	NM_001289553	21804.0	Mm.3248	NM_009365	ENSMUSG00000030782	Tgfb1i1	ARA55|Hic5|TSC-5|hic-5	transforming growth factor beta 1 induced transcript 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114080600-2	chr7	114080100	114081100	+	932.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	37181.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	3.0	3.5	0.0	3.0	8.5	4.0
Merged-chr6-83673635-4	chr6	83673148	83674148	+	932.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144943, intron 4 of 5)	MLT1I|LTR|ERVL-MaLR	4209.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	7.0	4.5	6.0	10.0	8.0	2.5
Merged-chr11-117121333-4	chr11	117120728	117121728	+	932.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 2 of 16)	intron (NM_001166507, intron 2 of 16)	6056.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-57205788-2	chr1	57205288	57206288	+	932.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_037990, intron 5 of 6)	intron (NR_037990, intron 5 of 6)	9208.0	NR_037990	407809.0	Mm.134505	NR_037990	ENSMUSG00000101429	BC055402	-	cDNA sequence BC055402	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138145764-4	chr1	138145240	138146240	+	932.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	29386.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-34444459-3	chr15	34443980	34444980	+	932.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1204.0	NM_001163485	19946.0	Mm.358632	NM_009083	ENSMUSG00000058600	Rpl30	-	ribosomal protein L30	protein-coding	0.0	3.5	4.0	0.0	3.5	3.0
Merged-chr2-170132195-3	chr2	170131672	170132672	+	932.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033299)	promoter-TSS (NM_001033299)	-952.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81370229-2	chr13	81369729	81370729	+	932.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 83 of 89)	intron (NM_054053, intron 83 of 89)	262915.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126101458-2	chr7	126100958	126101958	+	932.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001311143)	TTS (NM_001311143)	-19047.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31069982-2	chr17	31069482	31070482	+	932.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	12288.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	8.5	12.5	10.0	12.0	14.5	19.0
Merged-chr12-76377335-4	chr12	76376830	76377830	+	932.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178744, intron 1 of 1)	intron (NM_178744, intron 1 of 1)	7064.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127051279-2	chr10	127050779	127051779	+	932.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010009, intron 7 of 8)	intron (NM_010009, intron 7 of 8)	3033.0	NM_010009	13115.0	Mm.6216	NM_010009	ENSMUSG00000006724	Cyp27b1	Cp2b|Cyp1|Cyp27b|Cyp40|P450c1|Pddr|Vdd1|Vddr|VddrI|Vdr	cytochrome P450, family 27, subfamily b, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40612539-2	chr9	40612039	40613039	+	932.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-73425.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23700955-4	chr13	23700460	23701460	+	932.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2502.0	NM_178208	319155.0	Mm.261662	NM_178208	ENSMUSG00000060678	Hist1h4c	-	histone cluster 1, H4c	protein-coding	16.5	29.0	14.0	15.5	18.0	25.5
Merged-chr5-64233874-2	chr5	64233374	64234374	+	932.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	PB1D9|SINE|Alu	3517.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	5.0	13.0	10.0	0.5	4.0	5.0
Merged-chr1-164308468-2	chr1	164307968	164308968	+	932.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025505)	promoter-TSS (NM_025505)	796.0	NM_138314	171567.0	Mm.219428	NM_138314	ENSMUSG00000026575	Nme7	D530024H21Rik|Nm23-M7|Nm23-r7	NME/NM23 family member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60706193-2	chr18	60705693	60706693	+	932.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348100, intron 3 of 14)	intron (NM_001348100, intron 3 of 14)	21373.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	3.5	4.5	8.0	5.0	6.5	14.5
Merged-chr1-93510900-2	chr1	93510400	93511400	+	932.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-1204.0	NM_145519	227377.0	Mm.243091	NM_145519	ENSMUSG00000034066	Farp2	AI465173|BC009153|D030026M03Rik|Fir|mKIAA0793	FERM, RhoGEF and pleckstrin domain protein 2	protein-coding	0.0	0.0	6.5	1.5	3.5	1.0
Merged-chr4-149863715-2	chr4	149863217	149864217	+	932.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89450.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0.0	0.5	9.5	10.5	17.5	9.0
Merged-chr8-48011874-3	chr8	48011374	48012374	+	932.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-21323.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118102444-2	chr7	118101945	118102945	+	932.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13702.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	0.0	2.5	1.0	0.0	3.0	1.0
Merged-chr6-87731897-2	chr6	87731397	87732397	+	932.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159697, intron 1 of 7)	intron (NM_001159697, intron 1 of 7)	1028.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153144960-2	chr2	153144460	153145460	+	932.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 11 of 12)	intron (NM_001172117, intron 11 of 12)	-16341.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8837855-4	chr10	8837343	8838343	+	932.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	48227.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	4.5	23.0	12.5	15.0	15.0	19.5
Merged-chr5-64221200-2	chr5	64220700	64221700	+	932.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	RLTR11B|LTR|ERVK	-9157.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-24707858-3	chr6	24707365	24708365	+	932.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25380.0	NM_028920	74409.0	Mm.87331	NM_028920	ENSMUSG00000029679	Hyal6	4932701A20Rik|Hyal-ps1|Hyalp1	hyaluronoglucosaminidase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139213331-4	chr4	139212840	139213840	+	932.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	19229.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	149.0	368.0	241.0	90.5	178.5	154.5
Merged-chr10-19563544-2	chr10	19563044	19564044	+	932.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28405.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0.0	4.0	3.5	0.5	0.0	5.0
Merged-chr3-95014854-4	chr3	95014362	95015362	+	932.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357863, intron 1 of 8)	CpG	376.0	NM_030074	78266.0	Mm.389478	NM_030074	ENSMUSG00000019338	Zfp687	4931408L03Rik|Znf687|mKIAA1441	zinc finger protein 687	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85700743-4	chr8	85700152	85701152	+	932.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106189)	promoter-TSS (NR_106189)	-253.0	NR_106189	102465898.0		NR_106189	ENSMUSG00000098388	Mir8109	Gm27495|mmu-mir-8109	microRNA 8109	ncRNA	0.0	0.0	0.0	1.5	0.0	0.5
Merged-chr12-85818599-4	chr12	85818082	85819082	+	932.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360813)	TTS (NM_001360813)	6311.0	NM_001360451	58520.0	Mm.143795	NM_021446	ENSMUSG00000021252	Erg28	0610007P14Rik|1190004E09Rik|AU019315|C77855|ORF11	ergosterol biosynthesis 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135762632-4	chr4	135762111	135763111	+	932.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001085509, exon 2 of 37)	exon (NM_001085509, exon 2 of 37)	2896.0	NM_001085509	242702.0	Mm.318639	NM_001085509	ENSMUSG00000037139	Myom3	8430427K15Rik|Gm434	myomesin family, member 3	protein-coding	0.0	6.5	0.0	0.0	0.0	0.0
Merged-chr18-82475947-4	chr18	82475445	82476445	+	932.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025245, intron 1 of 3)	intron (NM_001025245, intron 1 of 3)	822.0	NM_010777	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112870980-4	chr12	112870455	112871455	+	932.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10039.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132974153-4	chr4	132973694	132974694	+	932.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010208)	promoter-TSS (NM_010208)	99.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107274037-4	chr3	107273538	107274538	+	932.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4820.0	NM_026774	68576.0	Mm.290035	NM_026774	ENSMUSG00000087260	Lamtor5	1110003H18Rik|Hbxip|XIP	late endosomal/lysosomal adaptor, MAPK and MTOR activator 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-22212451-3	chr10	22211953	22212953	+	932.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	38551.0	NM_009018	19370.0	Mm.439724	NM_009018		Raet1c	RAE-1gamma	retinoic acid early transcript gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67759856-4	chr7	67759347	67760347	+	932.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201639)	promoter-TSS (NM_201639)	-105.0	NM_207663	233335.0	Mm.60526	NM_183312	ENSMUSG00000030554	Synm	4930412K21Rik|AI852401|Dmn|E130104F11|Syn|Synemin	synemin, intermediate filament protein	protein-coding	0.0	5.0	0.0	0.0	13.0	0.0
Merged-chr2-84113817-4	chr2	84113321	84114321	+	932.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-172595.0	NM_027964	71861.0	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	4.5	8.5	15.5	4.5	14.5	32.0
Merged-chr1-72412891-4	chr1	72412367	72413367	+	932.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105446.0	NM_001357519	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116617849-4	chr11	116617331	116618331	+	932.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	6421.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165461975-4	chr1	165461463	165462463	+	932.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027430, intron 1 of 4)	intron (NM_027430, intron 1 of 4)	755.0	NM_027430	70456.0	Mm.195625	NM_027430	ENSMUSG00000026568	Mpc2	0610006C01Rik|2010002I07Rik|2610205H19Rik|AA108335|Brp44|ESTM43	mitochondrial pyruvate carrier 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-125144393-4	chr4	125143904	125144904	+	932.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16523.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	1.0	0.0	5.5	7.5	5.0	7.0
Merged-chr19-17244391-2	chr19	17243876	17244876	+	932.375	f0_balb.idr|f1_balb.idr	Intergenic	RLTR11A|LTR|ERVK	95129.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	4.0	10.5	7.5	36.5	24.0	44.0
Merged-chr9-116160293-4	chr9	116159843	116160843	+	932.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009371, intron 1 of 7)	intron (NM_009371, intron 1 of 7)	15020.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	22.5	36.0	34.0	43.5	56.0	34.5
Merged-chr4-132753139-2	chr4	132752636	132753636	+	932.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_133888, intron 1 of 7)	intron (NM_133888, intron 1 of 7)	4035.0	NM_133888	100340.0	Mm.287187	NM_133888	ENSMUSG00000028885	Smpdl3b	1110054A24Rik|AU045240|Asml3b	sphingomyelin phosphodiesterase, acid-like 3B	protein-coding	3.5	2.5	4.0	3.5	5.0	2.0
Merged-chr12-52602514-2	chr12	52601949	52602949	+	932.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045910)	promoter-TSS (NR_045910)	-127.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	24.0	8.5	5.0	24.0	8.5	5.0
Merged-chr15-25556412-4	chr15	25555917	25556917	+	932.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66133.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117090225-3	chr11	117089689	117090689	+	932.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12841.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117361690-3	chr8	117361181	117362181	+	932.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	12511.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4197271-4	chr12	4196821	4197821	+	932.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 7 of 21)	MTD|LTR|ERVL-MaLR	36644.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24191620-3	chr10	24191122	24192122	+	932.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31895.0	NM_021509	59012.0	Mm.285934	NM_021509	ENSMUSG00000020000	Moxd1	3230402N08Rik|MNCb-5203	monooxygenase, DBH-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127538986-2	chr10	127538486	127539486	+	932.3333130000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_008512, exon 89 of 89)	exon (NM_008512, exon 89 of 89)	-4427.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	2.0	1.5	4.0	2.0	0.5	3.0
Merged-chr6-31938442-2	chr6	31937942	31938942	+	932.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111846.0	NM_029587	76382.0	Mm.23510	NM_029587	ENSMUSG00000029766	1700012A03Rik	AI429084	RIKEN cDNA 1700012A03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11088747-3	chr4	11088216	11089216	+	932.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12511.0	NM_001085493	76947.0	Mm.275265	NM_001085493	ENSMUSG00000050323	Ndufaf6	2310030N02Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 6	protein-coding	0.0	1.0	0.0	0.0	0.5	1.0
Merged-chr11-118015612-3	chr11	118015106	118016106	+	932.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151726, intron 8 of 9)	intron (NR_151726, intron 8 of 9)	13336.0	NR_105898	102466768.0		NR_105898	ENSMUSG00000098958	Mir6933	Gm27856|mmu-mir-6933	microRNA 6933	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8283072-4	chr17	8282628	8283628	+	932.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018819)	promoter-TSS (NM_018819)	-685.0	NM_018819	55951.0	Mm.288510	NM_018819	ENSMUSG00000023861	Mpc1	0610006G08Rik|3830411I18Rik|Brp44l	mitochondrial pyruvate carrier 1	protein-coding	8.0	42.5	31.0	31.0	48.0	62.0
Merged-chr9-118554697-3	chr9	118554228	118555228	+	932.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018748, intron 14 of 23)	intron (NM_018748, intron 14 of 23)	48410.0	NM_018748	54214.0	Mm.10409	NM_018748	ENSMUSG00000038708	Golga4	AI225887|AU019508|Olp-1	golgi autoantigen, golgin subfamily a, 4	protein-coding	0.0	3.5	1.0	1.0	1.0	2.0
Merged-chr8-105157738-2	chr8	105157238	105158238	+	932.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12936.0	NM_001161457	12400.0	Mm.2018	NM_022309	ENSMUSG00000031885	Cbfb	AI893578|PEA2|PEBP2b|Pebp2|Pebpb2	core binding factor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47650165-2	chr6	47649699	47650699	+	932.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4895.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	0.0	2.0	1.0	0.0	2.0	1.0
Merged-chr10-81570512-2	chr10	81570012	81571012	+	932.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4775.0	NM_019725	21886.0	Mm.38608	NM_019725	ENSMUSG00000034771	Tle2	Grg2|mKIAA4188	transducin-like enhancer of split 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26639989-3	chr17	26639498	26640498	+	932.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 8 of 9)	intron (NM_026170, intron 8 of 9)	-36398.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65653189-4	chr3	65652695	65653695	+	932.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6093.0	NR_106200	102465905.0		NR_106200	ENSMUSG00000098944	Mir8120	Gm27637|mmu-mir-8120	microRNA 8120	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-133543267-4	chr3	133542763	133543763	+	932.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040400, intron 1 of 10)	intron (NM_001040400, intron 1 of 10)	1127.0	NM_001040400	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-77864279-4	chr14	77863767	77864767	+	932.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025384, intron 1 of 5)	intron (NM_025384, intron 1 of 5)	10650.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	33.0	43.5	44.0	9.0	31.0	24.5
Merged-chr9-95560771-8	chr9	95560302	95561302	+	932.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198414, exon 1 of 1)	exon (NM_198414, exon 1 of 1)	985.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-144313565-4	chr1	144313071	144314071	+	932.30835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64467.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115514876-4	chr5	115514381	115515381	+	932.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	8205.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	60.5	357.5	208.0	154.0	356.5	196.0
Merged-chr11-53492213-4	chr11	53491718	53492718	+	932.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12023.0	NM_183173	237761.0	Mm.145208	NM_183173	ENSMUSG00000044352	Sowaha	A830006N08Rik|Ankrd43	sosondowah ankyrin repeat domain family member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87639338-4	chr11	87638837	87639837	+	932.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045527, intron 5 of 5)	CpG	22173.0	NM_001045527	327992.0	Mm.390371	NM_001045527	ENSMUSG00000070345	Hsf5	Gm739|MLZ-220	heat shock transcription factor family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86836560-4	chr11	86836064	86837064	+	932.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28904.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27341649-4	chr14	27341150	27342150	+	932.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	MIRb|SINE|MIR	5613.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	12.5	40.5	26.5	14.0	11.5	6.5
Merged-chr10-67200429-4	chr10	67199909	67200909	+	932.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 3 of 25)	intron (NM_207221, intron 3 of 25)	14659.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21493056-3	chr13	21492554	21493554	+	932.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13470.0	NR_026798	100038371.0	Mm.133328	NR_026798		Zfp389	-	zinc finger protein 389	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-31852101-3	chr11	31851608	31852608	+	932.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18832.0	NM_001290676	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	0.0	2.5	1.0	6.5	4.5	2.5
Merged-chr15-93336401-4	chr15	93335914	93336914	+	932.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028315, exon 2 of 5)	non-coding (NR_028315, exon 2 of 5)	521.0	NR_028315	67057.0	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131867916-3	chr1	131867396	131868396	+	932.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144875, intron 2 of 5)	intron (NM_144875, intron 2 of 5)	619.0	NM_144875	226422.0	Mm.34027	NM_144875	ENSMUSG00000026433	Rab29	Rab7l1	RAB29, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191964351-4	chr1	191963839	191964839	+	932.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-13031.0	NM_001177900	74023.0	Mm.274393	NM_023727	ENSMUSG00000049353	Rd3	3322402L07Rik|rd-3|rd3	retinal degeneration 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-114743647-3	chr9	114743148	114744148	+	932.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026036, intron 3 of 3)	intron (NM_026036, intron 3 of 3)	12445.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	26.5	79.5	25.0	9.0	40.0	30.5
Merged-chr2-84358827-4	chr2	84358325	84359325	+	932.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018782, intron 9 of 15)	intron (NM_018782, intron 9 of 15)	66441.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32798969-4	chr16	32798485	32799485	+	932.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1550.0	NM_001145874	224116.0	Mm.153301	NM_146071	ENSMUSG00000035638	Muc20	BC026367	mucin 20	protein-coding	10.0	4.5	5.0	7.5	6.0	1.0
Merged-chr15-41447378-4	chr15	41446867	41447867	+	932.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358978)	promoter-TSS (NM_001358978)	-115.0	NR_152565	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191153264-4	chr1	191152761	191153761	+	932.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11556.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20054089-4	chr10	20053594	20054594	+	932.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 8 of 29)	intron (NM_008580, intron 8 of 29)	-94826.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130823832-2	chr4	130823332	130824332	+	932.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011520, exon 5 of 5)	3' UTR (NM_011520, exon 5 of 5)	31295.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-38038313-3	chr5	38037740	38038740	+	932.244446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289535)	promoter-TSS (NM_001289535)	-990.0	NM_001289536	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62731852-4	chr11	62731351	62732351	+	932.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2758.0	NM_133208	170740.0	Mm.339982	NM_133208	ENSMUSG00000005267	Zfp287	B230333C16Rik|SKAT-2|Skat2|Znf287|mszf16|mszf74	zinc finger protein 287	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123820710-3	chr5	123820196	123821196	+	932.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042421, intron 63 of 63)	intron (NM_001042421, intron 63 of 63)	44820.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-94268568-3	chr2	94268077	94269077	+	932.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-7178.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136717738-3	chr6	136717274	136718274	+	932.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145067, intron 18 of 25)	intron (NM_145067, intron 18 of 25)	-55881.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	17.5	18.5	9.5	0.0	15.0	1.0
Merged-chr17-78245089-4	chr17	78244593	78245593	+	932.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 2 of 16)	intron (NM_015800, intron 2 of 16)	44845.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96475603-4	chr15	96475120	96476120	+	932.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14777.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116307536-4	chr7	116307032	116308032	+	932.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305185, intron 3 of 26)	CpG	844.0	NM_001305185	233765.0	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90206710-4	chr9	90206216	90207216	+	932.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 12 of 12)	intron (NM_194334, intron 12 of 12)	43738.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-66857475-4	chr10	66856978	66857978	+	932.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62906.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78201443-4	chr17	78200893	78201893	+	932.1845089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 1 of 16)	CpG	1145.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58604779-4	chr15	58604273	58605273	+	932.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	189305.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-5309912-2	chr9	5309412	5310412	+	932.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_007609, intron 1 of 8)	intron (NM_007609, intron 1 of 8)	1063.0	NM_007609	12363.0	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129515182-2	chr4	129514714	129515714	+	932.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008228)	TTS (NM_008228)	1633.0	NM_010807	17357.0	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	8.0	15.5	5.5	2.0	3.0	6.0
Merged-chr6-145339384-2	chr6	145338887	145339887	+	932.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48238.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	35.0	85.5	59.5	20.5	66.5	53.0
Merged-chr6-47786210-2	chr6	47785710	47786710	+	932.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17442.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	0.0	0.0	1.0	0.0	0.0	1.5
Merged-chr8-80031402-4	chr8	80030907	80031907	+	932.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020259, intron 4 of 12)	intron (NM_020259, intron 4 of 12)	26601.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-12085682-4	chr2	12085186	12086186	+	932.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-215560.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18816198-4	chr2	18815682	18816682	+	932.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14364.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69061117-4	chr11	69060625	69061625	+	932.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028005, exon 1 of 1)	3' UTR (NM_028005, exon 1 of 1)	1350.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88741613-4	chr10	88741132	88742132	+	932.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025859, intron 4 of 5)	C-rich|Low_complexity|Low_complexity	10218.0	NM_025859	104303.0	Mm.291247	NM_025859	ENSMUSG00000060904	Arl1	2310008D22Rik|AU019749	ADP-ribosylation factor-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122376468-4	chr2	122375971	122376971	+	932.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7553.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	106.5	303.0	217.5	90.0	295.5	167.5
Merged-chr1-88255583-5	chr1	88255053	88256053	+	932.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001281466, exon 34 of 42)	exon (NM_001281466, exon 34 of 42)	13855.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53117820-4	chr4	53117315	53118315	+	932.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	42080.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8466118-4	chr10	8465630	8466630	+	932.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 1 of 7)	intron (NM_177387, intron 1 of 7)	52695.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108398290-4	chr6	108397786	108398786	+	932.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 30 of 61)	intron (NM_010585, intron 30 of 61)	-91457.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.0	0.0	2.0	6.5	9.5	8.0
Merged-chr4-148625889-3	chr4	148625389	148626389	+	932.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003898, intron 1 of 6)	intron (NM_001003898, intron 1 of 6)	1107.0	NR_027864	230908.0	Mm.22453	NM_145556	ENSMUSG00000041459	Tardbp	1190002A23Rik|C85084|TDP-43|Tdp43	TAR DNA binding protein	protein-coding	57.5	134.5	70.0	74.0	88.5	100.5
Merged-chr1-154096332-4	chr1	154095851	154096851	+	932.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104836.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130803927-4	chr4	130803334	130804334	+	932.0476070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	11297.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65854231-4	chr17	65853750	65854750	+	932.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198949, intron 6 of 9)	intron (NM_001198949, intron 6 of 9)	30673.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	24.0	38.0	17.0	10.0	42.0	29.0
Merged-chr8-22889621-4	chr8	22889126	22890126	+	932.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081149, intron 3 of 17)	intron (NM_001081149, intron 3 of 17)	30087.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	9.5	17.0	17.5	8.0	20.0	17.5
Merged-chr14-25394782-4	chr14	25394280	25395280	+	932.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64405.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-40744394-4	chr3	40743927	40744927	+	932.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1186.0	NM_011020	18415.0	Mm.39330	NM_011020	ENSMUSG00000025757	Hspa4l	94kDa|AI461691|APG-1|Osp94	heat shock protein 4 like	protein-coding	0.0	3.0	0.0	0.0	3.5	0.0
Merged-chr5-99297787-4	chr5	99297295	99298295	+	932.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030692, exon 4 of 4)	non-coding (NR_030692, exon 4 of 4)	-44868.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	30.0	70.5	66.5	24.0	69.5	55.0
Merged-chr6-88832112-4	chr6	88831608	88832608	+	932.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9827.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-30303316-3	chr6	30302794	30303794	+	932.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009459, intron 1 of 6)	intron (NM_009459, intron 1 of 6)	1245.0	NM_009459	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109212667-2	chr4	109212167	109213167	+	932.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5746.0	NM_001285895	108802.0	Mm.318248	NM_001033226	ENSMUSG00000028558	Calr4	4933403L16Rik|AU017583	calreticulin 4	protein-coding	0.0	0.0	0.0	0.0	3.0	2.5
Merged-chr7-19332111-2	chr7	19331611	19332611	+	932.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-12960.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84465751-1	chr8	84465251	84466251	+	932.0	f0_balb.idr	intron (NM_001252060, intron 3 of 47)	RLTR12B|LTR|ERVK	50387.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	0.0	1.0	2.0	0.5	7.5	6.0
Merged-chr18-16686808-2	chr18	16686308	16687308	+	932.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007664, intron 2 of 15)	ORR1F|LTR|ERVL-MaLR	122438.0	NM_007664	12558.0	Mm.257437	NM_007664	ENSMUSG00000024304	Cdh2	CDHN|N-CAD|Ncad	cadherin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6571761-2	chr15	6571261	6572261	+	932.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8086.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53114787-2	chr4	53114287	53115287	+	932.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	MIRc|SINE|MIR	45108.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-30654389-3	chr10	30653863	30654863	+	932.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001358841, exon 12 of 16)	exon (NM_001358841, exon 12 of 16)	1504.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75165917-2	chr11	75165417	75166417	+	932.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001098203, exon 2 of 2)	exon (NM_001098203, exon 2 of 2)	2235.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120903664-4	chr6	120903207	120904207	+	932.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007544, intron 1 of 5)	intron (NM_007544, intron 1 of 5)	13117.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	0.0	1.5	1.5	0.5	2.0	4.0
Merged-chr5-137662025-2	chr5	137661525	137662525	+	932.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178162, intron 5 of 11)	MTD|LTR|ERVL-MaLR	-16311.0	NM_010571	16369.0	Mm.24486	NM_010571	ENSMUSG00000047182	Irs3	AA408304	insulin receptor substrate 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121645085-2	chr9	121644585	121645585	+	932.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011703, intron 1 of 12)	intron (NM_011703, intron 1 of 12)	2369.0	NM_011703	22354.0	Mm.282007	NM_011703	ENSMUSG00000032528	Vipr1	AV071699|VIP-R1|VPAC1	vasoactive intestinal peptide receptor 1	protein-coding	0.0	3.0	1.0	0.0	3.0	0.5
Merged-chr17-36836297-4	chr17	36835883	36836883	+	932.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286727)	promoter-TSS (NM_001286727)	-763.0	NM_001025599	22670.0	Mm.34587	NM_030698	ENSMUSG00000024457	Trim26	AI462198|Zfp173|Zfp1736	tripartite motif-containing 26	protein-coding	74.0	193.5	151.0	69.0	192.0	119.5
Merged-chr16-4084589-2	chr16	4084089	4085089	+	932.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001025432, exon 31 of 31)	exon (NM_001025432, exon 31 of 31)	-6779.0	NM_026508	68015.0	Mm.123366	NM_026508	ENSMUSG00000005981	Trap1	2410002K23Rik|HSP75	TNF receptor-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125622744-1	chr7	125622244	125623244	+	932.0	f1_c57bl6.idr	intron (NM_021887, intron 1 of 8)	intron (NM_021887, intron 1 of 8)	19315.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	29.0	69.0	64.5	90.0	210.0	177.5
Merged-chr3-84745776-1	chr3	84745276	84746276	+	932.0	f0_balb.idr	Intergenic	Intergenic	-69801.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	1.5	0.0	1.5	5.5	0.0	2.5
Merged-chr12-40560913-2	chr12	40560413	40561413	+	932.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	Lx4A|LINE|L1	114860.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-75735096-1	chr12	75734596	75735596	+	932.0	f0_balb.idr	exon (NM_030750, exon 1 of 3)	exon (NM_030750, exon 1 of 3)	633.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107836393-3	chr13	107835888	107836888	+	932.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	53676.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	3.0	8.0	7.5	3.0	6.0	19.0
Merged-chr17-84001371-2	chr17	84000871	84001871	+	932.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_130994, intron 1 of 1)	intron (NR_130994, intron 1 of 1)	2819.0	NR_130994	78148.0	Mm.243918	NR_130994		8430430B14Rik	-	RIKEN cDNA 8430430B14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98058200-2	chr11	98057700	98058700	+	932.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4738.0	NM_146028	217154.0	Mm.181008	NM_146028	ENSMUSG00000017400	Stac2	24b2|24b2/STAC2|AW240854	SH3 and cysteine rich domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89715069-3	chr3	89714571	89715571	+	932.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357958)	promoter-TSS (NM_001357958)	49.0	NM_001038587	56417.0	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|DRADA|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	0.5	4.0	5.5	0.0	8.5	1.0
Merged-chr18-36483355-3	chr18	36482849	36483849	+	932.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-28854.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107546281-1	chr9	107545781	107546781	+	932.0	f1_c57bl6.idr	TTS (NM_018879)	TTS (NM_018879)	-1029.0	NM_053253	114602.0	Mm.28331	NM_053253	ENSMUSG00000010044	Zmynd10	Blu	zinc finger, MYND domain containing 10	protein-coding	1.5	9.5	2.0	0.0	7.0	5.0
Merged-chr7-79612997-2	chr7	79612497	79613497	+	932.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019799, intron 1 of 10)	intron (NM_019799, intron 1 of 10)	4660.0	NM_019799	56315.0	Mm.10909	NM_019799	ENSMUSG00000030549	Rhcg	BB065800	Rhesus blood group-associated C glycoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128284458-2	chr10	128283958	128284958	+	932.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019963, intron 19 of 23)	intron (NM_019963, intron 19 of 23)	13626.0	NM_031252	83430.0	Mm.125482	NM_031252	ENSMUSG00000025383	Il23a	IL-23|p19	interleukin 23, alpha subunit p19	protein-coding	0.0	0.0	0.5	2.0	0.0	2.5
Merged-chr17-8224868-2	chr17	8224368	8225368	+	932.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-11175.0	NM_001190333	12458.0	Mm.8007	NM_009835	ENSMUSG00000040899	Ccr6	CC-CKR-6|CCR-6|Cmkbr6|KY411	chemokine (C-C motif) receptor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71039883-4	chr2	71039369	71040369	+	932.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 1 of 9)	intron (NM_145524, intron 1 of 9)	15737.0	NM_145524	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155058734-4	chr1	155058224	155059224	+	932.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24540.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10685767-2	chr19	10685267	10686267	+	932.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_131163)	TTS (NR_131163)	974.0	NR_131163	72305.0	Mm.383489	NR_131163	ENSMUSG00000114772	2210404E10Rik	-	RIKEN cDNA 2210404E10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173544415-1	chr2	173543915	173544915	+	932.0	f1_c57bl6.idr	Intergenic	Intergenic	21823.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	0.0	0.5	0.0	0.0	1.0	0.0
Merged-chr13-9179381-2	chr13	9178881	9179881	+	932.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	85500.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134719892-4	chr1	134719403	134720403	+	931.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355726, intron 1 of 8)	intron (NM_001355726, intron 1 of 8)	10603.0	NM_001355726	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20507276-4	chr10	20506772	20507772	+	931.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 2 of 12)	intron (NM_013875, intron 2 of 12)	41056.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125620232-4	chr7	125619724	125620724	+	931.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021887, intron 1 of 8)	MTD|LTR|ERVL-MaLR	16795.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	15.5	11.5	25.0	16.5	25.0	19.5
Merged-chr13-45693690-4	chr13	45693178	45694178	+	931.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 5 of 6)	intron (NM_001199304, intron 5 of 6)	186234.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60612353-4	chr13	60611841	60612841	+	931.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	10130.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99526946-4	chr12	99526438	99527438	+	931.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36903.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16139876-4	chr19	16139359	16140359	+	931.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	7028.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	41.5	55.5	59.0	41.0	82.0	64.0
Merged-chr16-30604266-4	chr16	30603752	30604752	+	931.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4529.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-118647606-4	chr5	118647129	118648129	+	931.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	86910.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	7.0	18.0	16.5	14.0	6.5	19.5
Merged-chr6-145101162-3	chr6	145100725	145101725	+	931.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14411.0	NM_001281980	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	1.0	6.0	25.0	15.5	28.5	25.5
Merged-chr9-59578451-3	chr9	59577965	59578965	+	931.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175235, exon 1 of 12)	exon (NM_175235, exon 1 of 12)	128.0	NM_175235	76183.0	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145193617-4	chr6	145193124	145194124	+	931.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177222, intron 7 of 15)	intron (NM_177222, intron 7 of 15)	17346.0	NM_177222	320662.0	Mm.207779	NM_177222	ENSMUSG00000043541	Casc1	A230084G12Rik|Las1	cancer susceptibility candidate 1	protein-coding	13.0	2.5	8.5	5.5	30.0	9.5
Merged-chr11-34776190-4	chr11	34775685	34776685	+	931.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 1 of 51)	intron (NM_033374, intron 1 of 51)	7720.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29708255-4	chr19	29707766	29708766	+	931.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029993)	TTS (NM_029993)	10325.0	NM_029993	77836.0	Mm.138437	NM_029993	ENSMUSG00000024806	Mlana	A930034P04Rik|Mart1	melan-A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20590295-4	chr10	20589801	20590801	+	931.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 2 of 12)	intron (NM_013875, intron 2 of 12)	-41973.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27557050-14	chr17	27556685	27557685	+	931.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039356, intron 2 of 5)	CpG-6152	532.0	NM_001166477	111241.0	Mm.426212	NM_001166476	ENSMUSG00000078249	Hmga1b	Hmga1-rs1|Hmgi-rs1	high mobility group AT-hook 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31613230-2	chr15	31612730	31613730	+	931.9166869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356313, intron 5 of 5)	intron (NM_001356313, intron 5 of 5)	11114.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97781013-4	chr7	97780487	97781487	+	931.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-7554.0	NM_001357365	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	4.0	16.0	16.0	5.0	28.0	5.5
Merged-chr4-101302274-4	chr4	101301760	101302760	+	931.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36978.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102617818-4	chr15	102617289	102618289	+	931.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310067, intron 1 of 11)	intron (NM_001310067, intron 1 of 11)	7675.0	NM_001310070	223922.0	Mm.208714	NM_146065	ENSMUSG00000099083	Atf7	1110012F10Rik|9430065F09Rik|AI549878|C130020M04Rik	activating transcription factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91729901-3	chr16	91729403	91730403	+	931.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	CpG	532.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92981274-3	chr1	92980780	92981780	+	931.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022320, intron 1 of 1)	intron (NM_022320, intron 1 of 1)	2377.0	NM_022320	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58274469-4	chr13	58273979	58274979	+	931.8875119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019832)	promoter-TSS (NM_019832)	-291.0	NM_019832	56278.0	Mm.296625	NM_019832	ENSMUSG00000021552	Gkap1	42kDa|4933400B15Rik|D13Ertd340e|Gkap42	G kinase anchoring protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61946055-4	chr9	61945566	61946566	+	931.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024245, intron 1 of 22)	intron (NM_024245, intron 1 of 22)	733.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69681172-8	chr12	69680710	69681710	+	931.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001135559, intron 1 of 22)	intron (NM_001135559, intron 1 of 22)	642.0	NM_001135559	20663.0	Mm.3770	NM_001135559	ENSMUSG00000034801	Sos2	SOS-2|mSOS-2	SOS Ras/Rho guanine nucleotide exchange factor 2	protein-coding	16.5	70.0	63.0	34.5	47.0	37.0
Merged-chr17-43518918-4	chr17	43518455	43519455	+	931.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-16182.0	NM_008585	17287.0	Mm.5346	NM_008585	ENSMUSG00000023914	Mep1a	AI098089|AW107200|Mep-1|Mep-1a|Mep1	meprin 1 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-35893333-3	chr5	35892839	35893839	+	931.855591	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027373)	promoter-TSS (NM_027373)	20.0	NM_027373	70292.0	Mm.125167	NM_027373	ENSMUSG00000029094	Afap1	2600003E23Rik|9630044L16Rik|AI848729|Afap|mKIAA3018	actin filament associated protein 1	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr4-106429325-4	chr4	106428847	106429847	+	931.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183225, intron 62 of 67)	intron (NM_183225, intron 62 of 67)	34978.0	NM_153565	100102.0	Mm.133268	NM_153565	ENSMUSG00000044254	Pcsk9	AI415265|AI747682|FH3|HCHOLA3|Narc1|PC9	proprotein convertase subtilisin/kexin type 9	protein-coding	0.0	0.0	1.0	0.0	0.0	1.5
Merged-chr7-81305706-2	chr7	81305206	81306206	+	931.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 8 of 21)	intron (NM_008803, intron 8 of 21)	39528.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-55878522-2	chr17	55878022	55879022	+	931.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_144546, intron 1 of 3)	L1MC|LINE|L1	431.0	NM_144546	104349.0	Mm.460659	NM_144546	ENSMUSG00000057835	Zfp119a	AL024077|Mzf13|Zfp119	zinc finger protein 119a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-3000429-4	chr9	2999911	3000911	+	931.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	38332.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-3404616-4	chr9	3404122	3405122	+	931.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027545, intron 1 of 17)	intron (NM_027545, intron 1 of 17)	537.0	NM_027545	244672.0	Mm.245482	NM_027545	ENSMUSG00000025898	Cwf19l2	3230401L03Rik|9030209E10	CWF19-like 2, cell cycle control (S. pombe)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4478694-3	chr7	4478230	4479230	+	931.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290416, exon 19 of 20)	exon (NM_001290416, exon 19 of 20)	-7846.0	NR_028416	320749.0	Mm.396688	NR_028416		D630041G03Rik	-	RIKEN cDNA D630041G03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-113704924-3	chr9	113704442	113705442	+	931.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164678, intron 1 of 17)	intron (NM_001164678, intron 1 of 17)	3317.0	NM_001164678	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140350135-4	chr5	140349618	140350618	+	931.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172277, intron 7 of 10)	intron (NM_172277, intron 7 of 10)	18162.0	NM_001356584	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-115020225-4	chr7	115019691	115020691	+	931.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	68917.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	12.0	58.5	32.5	18.5	31.0	38.5
Merged-chr6-134414255-6	chr6	134413811	134414811	+	931.8174439999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355686)	promoter-TSS (NM_001355686)	-117.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	1.0	25.5	4.0	5.0	19.5	26.0
Merged-chr12-98260182-4	chr12	98259744	98260744	+	931.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008079)	promoter-TSS (NM_008079)	-785.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-25679320-5	chr18	25678830	25679830	+	931.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001146295, exon 2 of 2)	exon (NM_001146295, exon 2 of 2)	418.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160058345-4	chr2	160057845	160058845	+	931.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	41692.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	1.5	2.5	10.5	13.0	5.5	3.5
Merged-chr2-126490815-4	chr2	126490334	126491334	+	931.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 1 of 27)	intron (NM_001359975, intron 1 of 27)	719.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55755628-3	chr16	55755138	55756138	+	931.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66500.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-78889863-3	chr8	78889365	78890365	+	931.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68713.0	NM_030145	78651.0	Mm.28694	NM_030145	ENSMUSG00000031683	Lsm6	1500031N17Rik|2410088K19Rik|AI747288	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-82793802-3	chr10	82793303	82794303	+	931.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16B|LTR|ERVL	-18320.0	NR_038042	70003.0	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	7.5	0.5	4.0	1.5	6.0	2.0
Merged-chr1-84002860-3	chr1	84002346	84003346	+	931.755554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	216115.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153803137-4	chr1	153802650	153803650	+	931.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243223, intron 13 of 20)	intron (NM_001243223, intron 13 of 20)	40991.0	NM_001243223	240816.0	Mm.329340	NM_001243223	ENSMUSG00000042641	Rgsl1	4930415K13Rik|Gm202|Rgsl2	regulator of G-protein signaling like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34136747-2	chr17	34136247	34137247	+	931.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360530, intron 2 of 5)	intron (NM_001360530, intron 2 of 5)	-8669.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	39.0	88.5	92.0	51.0	92.0	65.5
Merged-chr19-24301153-4	chr19	24300667	24301667	+	931.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008846, intron 14 of 14)	intron (NM_008846, intron 14 of 14)	-20581.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	3.5	7.0	9.5	9.0	4.5	0.0
Merged-chr6-145835572-3	chr6	145835060	145836060	+	931.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27177.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-54927506-4	chr1	54926993	54927993	+	931.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1106.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	2.0	4.5	6.5	2.0	5.5	6.5
Merged-chr6-143050393-4	chr6	143049863	143050863	+	931.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362117, intron 11 of 26)	intron (NM_001362117, intron 11 of 26)	49789.0	NM_001362118	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58595006-3	chr15	58594483	58595483	+	931.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	179515.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-8660717-4	chr2	8660221	8661221	+	931.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-528794.0	NR_038180	73438.0	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21658818-4	chr5	21658314	21659314	+	931.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026034, intron 4 of 5)	intron (NM_026034, intron 4 of 5)	12830.0	NM_026034	67211.0	Mm.260782	NM_026034	ENSMUSG00000038525	Armc10	2810037C14Rik|Svh	armadillo repeat containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-22915996-3	chr19	22915507	22916507	+	931.7000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035239, intron 19 of 24)	intron (NM_001035239, intron 19 of 24)	165402.0	NR_029591	387200.0		NR_029591	ENSMUSG00000065507	Mir204	Mirn204|mir-204|mmu-mir-204	microRNA 204	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-45454521-2	chr8	45454021	45455021	+	931.6999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43902.0	NM_126166	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73463843-6	chr2	73463378	73464378	+	931.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-9989.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45658849-3	chr19	45658362	45659362	+	931.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013907, intron 1 of 8)	intron (NM_013907, intron 1 of 8)	1331.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-9470578-4	chr14	9470073	9471073	+	931.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-413522.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	6.0	4.0	0.0	0.0	0.5	1.0
Merged-chr14-48138053-1	chr14	48137553	48138553	+	931.6666869999999	f0_balb.idr	intron (NM_033602, intron 1 of 5)	intron (NM_033602, intron 1 of 5)	17184.0	NM_033602	93834.0	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	8.5	0.0	2.0	10.5	6.5	10.0
Merged-chr1-79760254-4	chr1	79759728	79760728	+	931.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027057, intron 1 of 4)	intron (NM_027057, intron 1 of 4)	1541.0	NM_001111279	69368.0	Mm.293273	NM_027057	ENSMUSG00000073643	Wdfy1	1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435	WD repeat and FYVE domain containing 1	protein-coding	5.0	36.0	51.5	21.5	39.0	26.0
Merged-chr1-125527477-3	chr1	125526974	125527974	+	931.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33121.0	NM_001356294	74150.0	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-53914187-4	chr10	53913675	53914675	+	931.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 11 of 12)	intron (NM_008548, intron 11 of 12)	161621.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3343120-5	chr5	3342633	3343633	+	931.657166	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009873)	promoter-TSS (NM_009873)	-760.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11524027-4	chr2	11523532	11524532	+	931.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	-21942.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126104913-4	chr4	126104377	126105377	+	931.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 1 of 10)	intron (NM_028800, intron 1 of 10)	920.0	NM_001145827	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	19.5	16.5	19.5	10.0	20.0	22.0
Merged-chr8-117121465-4	chr8	117120975	117121975	+	931.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021486, intron 7 of 10)	intron (NM_021486, intron 7 of 10)	25610.0	NM_001163028	63857.0	Mm.174133	NM_021486	ENSMUSG00000031845	Bco1	Bcdo|Bcdo1|Bcmo1|CMO1|Cmoi|beta-CD|betaCMOOX	beta-carotene oxygenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-130900444-4	chr7	130899927	130900927	+	931.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133942, intron 4 of 9)	intron (NM_133942, intron 4 of 9)	-7841.0	NR_106028	102466219.0		NR_106028	ENSMUSG00000104914	Mir7061	mmu-mir-7061	microRNA 7061	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92179843-4	chr1	92179353	92180353	+	931.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207225, intron 1 of 26)	CpG	488.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31285428-4	chr6	31284889	31285889	+	931.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040261, intron 3 of 4)	L2c|LINE|L2	65038.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78915912-4	chr15	78915459	78916459	+	931.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020271, intron 1 of 1)	intron (NM_020271, intron 1 of 1)	2040.0	NM_020271	57028.0	Mm.263169	NM_020271	ENSMUSG00000116165	Pdxp	1600027H05Rik|AB041662|PLPP	pyridoxal (pyridoxine, vitamin B6) phosphatase	protein-coding	1.5	1.0	0.0	1.5	1.0	0.0
Merged-chr19-11263747-4	chr19	11263278	11264278	+	931.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007641, intron 1 of 6)	intron (NM_007641, intron 1 of 6)	2373.0	NM_007641	12482.0	Mm.4046	NM_007641	ENSMUSG00000024673	Ms4a1	AA960661|Cd20|Ly-44|Ms4a2	membrane-spanning 4-domains, subfamily A, member 1	protein-coding	14.0	36.5	30.5	27.5	46.0	27.0
Merged-chr5-122652667-3	chr5	122652165	122653165	+	931.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284402, intron 1 of 12)	intron (NM_001284402, intron 1 of 12)	2241.0	NM_001284402	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	0.5	3.5	4.0	0.0	4.0	1.0
Merged-chr2-163676967-4	chr2	163676465	163677465	+	931.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 2 of 4)	intron (NM_001039390, intron 2 of 4)	-17072.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70693818-4	chr8	70693319	70694319	+	931.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3920.0	NM_010592	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	17.0	31.5	22.0	7.5	20.5	24.0
Merged-chr13-65101479-4	chr13	65100983	65101983	+	931.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083901, intron 2 of 12)	intron (NM_001083901, intron 2 of 12)	11499.0	NM_001083901	66631.0	Mm.239196	NM_133680	ENSMUSG00000038212	Mfsd14b	5730414C17Rik|AU045608|AW539692|Hiatl1	major facilitator superfamily domain containing 14B	protein-coding	1.0	0.0	3.0	2.0	0.0	2.0
Merged-chr17-83335360-4	chr17	83334859	83335859	+	931.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15572.0	NM_001114361	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117069876-4	chr8	117069367	117070367	+	931.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 5 of 42)	intron (NM_029686, intron 5 of 42)	12582.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132477065-4	chr1	132476518	132477518	+	931.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172517)	promoter-TSS (NM_172517)	-349.0	NM_001357486	213464.0	Mm.132868	NM_172517	ENSMUSG00000026439	Rbbp5	4933411J24Rik|C330016J05	retinoblastoma binding protein 5, histone lysine methyltransferase complex subunit	protein-coding	3.5	9.5	19.0	31.5	20.5	15.5
Merged-chr1-156455282-3	chr1	156454796	156455796	+	931.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 3 of 15)	ORR1B1|LTR|ERVL-MaLR	19032.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	6.5	16.0	12.5	16.0	68.0	28.0
Merged-chr9-49109287-3	chr9	49108778	49109778	+	931.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359460, intron 5 of 12)	intron (NM_001359460, intron 5 of 12)	6499.0	NM_030709	80893.0	Mm.72799	NM_030709	ENSMUSG00000032268	Tmprss5	spinesin	transmembrane protease, serine 5 (spinesin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3818153-4	chr12	3817647	3818647	+	931.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	10987.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-113792820-4	chr9	113792315	113793315	+	931.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286603)	promoter-TSS (NM_001286603)	-515.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	7.0	39.5	13.5	5.0	24.0	27.0
Merged-chr8-57587565-4	chr8	57587035	57588035	+	931.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 1 of 11)	intron (NM_001167981, intron 1 of 11)	-64218.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127342499-4	chr10	127342004	127343004	+	931.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010296)	promoter-TSS (NM_010296)	-925.0	NM_010296	14632.0	Mm.391450	NM_010296	ENSMUSG00000025407	Gli1	AV235269|Zfp-5|Zfp5	GLI-Kruppel family member GLI1	protein-coding	9.0	7.5	1.5	7.0	0.5	2.0
Merged-chr18-81572175-4	chr18	81571682	81572682	+	931.520874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	419898.0	NR_039589	100628596.0		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59165982-2	chr2	59165482	59166482	+	931.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	B1_Mus1|SINE|Alu	5132.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65726071-2	chr17	65725571	65726571	+	931.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	46681.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-93276449-3	chr15	93275941	93276941	+	931.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1262.0	NM_001346785	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48325055-2	chr17	48324555	48325555	+	931.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177083, exon 6 of 6)	3' UTR (NM_177083, exon 6 of 6)	8893.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41333805-2	chr19	41333305	41334305	+	931.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	L1MC1|LINE|L1	51265.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	75.5	130.0	99.0	48.5	172.0	108.0
Merged-chr2-91190655-3	chr2	91190159	91191159	+	931.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355279, intron 5 of 9)	intron (NM_001355279, intron 5 of 9)	4376.0	NM_013839	22259.0	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	14.0	16.0	29.0	1.5	10.5	6.0
Merged-chr4-102930857-4	chr4	102930355	102931355	+	931.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144906, intron 17 of 23)	intron (NM_144906, intron 17 of 23)	-55524.0	NM_001163767	67344.0	Mm.111346	NM_026100	ENSMUSG00000028523	Tctex1d1	1700055O19Rik	Tctex1 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-24223733-4	chr18	24223264	24224264	+	931.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361200, intron 1 of 12)	intron (NM_001361200, intron 1 of 12)	17770.0	NM_001160404	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-99914121-2	chr4	99913621	99914621	+	931.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15330.0	NM_028132	72157.0	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136639352-2	chr1	136638852	136639852	+	931.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14451.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-112400298-2	chr7	112399798	112400798	+	931.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027587, intron 7 of 9)	intron (NM_027587, intron 7 of 9)	-27408.0	NM_020606	57342.0	Mm.143763	NM_020606	ENSMUSG00000030770	Parva	2010012A22Rik|5430400F08Rik|AI225929|AU042898|Actp|CH-ILKBP|Parvin	parvin, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158147591-2	chr2	158147091	158148091	+	931.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1199.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60602585-4	chr13	60602052	60603052	+	931.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001285917, exon 2 of 27)	exon (NM_001285917, exon 2 of 27)	341.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	20.0	21.0	39.0	35.5	39.0	38.5
Merged-chr15-3994600-2	chr15	3994100	3995100	+	931.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145930, intron 1 of 5)	intron (NM_145930, intron 1 of 5)	1152.0	NM_145930	106064.0	Mm.21299	NM_145930	ENSMUSG00000041935	AW549877	AI195826	expressed sequence AW549877	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95671303-3	chr10	95670805	95671805	+	931.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107159.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-109751452-2	chr7	109750952	109751952	+	931.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020050, intron 1 of 4)	intron (NM_020050, intron 1 of 4)	811.0	NM_020050	56786.0	Mm.240668	NM_020050	ENSMUSG00000031021	Tmem9b	2310004K06Rik|AW539847|D7H11orf15|ICRFP703B1614Q5.3	TMEM9 domain family, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84840706-2	chr1	84840206	84841206	+	931.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025386, intron 1 of 3)	intron (NM_025386, intron 1 of 3)	865.0	NM_025386	66153.0	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77906919-2	chr9	77906419	77907419	+	931.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-10446.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-70176427-2	chr16	70175927	70176927	+	931.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137522.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	2.0	0.5	0.5	0.0	1.0	1.5
Merged-chr2-12160737-2	chr2	12160237	12161237	+	931.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001309, intron 23 of 29)	intron (NM_001001309, intron 23 of 29)	-140509.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64964925-2	chr5	64964425	64965425	+	931.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4829.0	NM_011604	21899.0	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8592841-2	chr17	8592341	8593341	+	931.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290707, intron 1 of 22)	intron (NM_001290707, intron 1 of 22)	66040.0	NM_001290707	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-5080220-5	chr10	5079692	5080692	+	931.4733279999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079686, intron 37 of 54)	intron (NM_001079686, intron 37 of 54)	-11129.0	NM_022027	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-77354692-4	chr5	77354151	77355151	+	931.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159518, intron 3 of 5)	intron (NM_001159518, intron 3 of 5)	44167.0	NM_153798	231329.0	Mm.273217	NM_153798	ENSMUSG00000029250	Polr2b	Pol2rb|Rpb140|Rpb2	polymerase (RNA) II (DNA directed) polypeptide B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8493527-4	chr12	8493002	8494002	+	931.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6507.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	6.0	6.5	5.5	2.0	7.0	0.0
Merged-chr1-106320805-4	chr1	106320304	106321304	+	931.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 4 of 16)	intron (NM_133821, intron 4 of 16)	148935.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-62725153-3	chr1	62724602	62725602	+	931.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	21785.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180429088-3	chr1	180428596	180429596	+	931.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54408.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105339155-4	chr8	105338656	105339656	+	931.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	8814.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-45924790-4	chr1	45924325	45925325	+	931.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016917, intron 1 of 7)	intron (NM_016917, intron 1 of 7)	769.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120663911-4	chr2	120663398	120664398	+	931.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54303.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	0.0	0.0	1.5	1.5	6.0	5.5
Merged-chr7-84779488-6	chr7	84779031	84780031	+	931.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD2|LINE|L1	-74040.0	NM_146415	258410.0	Mm.484702	NM_146415	ENSMUSG00000070460	Olfr291	MOR254-2	olfactory receptor 291	protein-coding	0.0	9.0	0.0	3.0	30.5	23.0
Merged-chr4-155488449-4	chr4	155487946	155488946	+	931.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2915.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5599158-4	chr17	5598664	5599664	+	931.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	106564.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108426811-5	chr6	108426162	108427162	+	931.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 40 of 61)	intron (NM_010585, intron 40 of 61)	-63081.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.0	1.5	7.5	5.0	5.0	6.5
Merged-chr17-24781066-3	chr17	24780549	24781549	+	931.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23333.0	NM_029197	75178.0	Mm.52592	NM_029197	ENSMUSG00000024155	Meiob	4930528F23Rik|MLZ-675	meiosis specific with OB domains	protein-coding	1.5	7.5	11.5	21.0	112.5	49.0
Merged-chr4-133875290-3	chr4	133874780	133875780	+	931.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285506)	promoter-TSS (NM_001285506)	-549.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	7.0	7.5	18.0	46.0	59.5	33.0
Merged-chr10-87552880-4	chr10	87552375	87553375	+	931.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008777, intron 3 of 12)	intron (NM_008777, intron 3 of 12)	31080.0	NM_008777	18478.0	Mm.263539	NM_008777	ENSMUSG00000020051	Pah	AW106920	phenylalanine hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-81020052-7	chr5	81019582	81020582	+	931.371399	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347367)	promoter-TSS (NM_001347367)	-489.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	8.0	2.0	1.5	0.0	0.0	7.0
Merged-chr4-150570487-3	chr4	150569987	150570987	+	931.3666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	81687.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	31.0	88.5	29.5	18.5	63.0	45.0
Merged-chr7-16056710-4	chr7	16056274	16057274	+	931.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-15071.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	18.0	20.5	6.0	2.5	7.0	10.0
Merged-chr1-130979658-2	chr1	130979158	130980158	+	931.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39543.0	NM_001009940	329244.0	Mm.131480	NM_001009940	ENSMUSG00000016524	Il19	-	interleukin 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21134816-3	chr9	21134316	21135316	+	931.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-3541.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84168244-2	chr15	84167744	84168744	+	931.3333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105816)	promoter-TSS (NR_105816)	-26.0	NR_105816	102466642.0		NR_105816	ENSMUSG00000098882	Mir6392	Gm27431|mmu-mir-6392	microRNA 6392	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184731827-3	chr1	184731285	184732285	+	931.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008250, exon 1 of 4)	exon (NM_008250, exon 1 of 4)	708.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-38013109-4	chr3	38012566	38013566	+	931.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114253.0	NR_040559	626410.0	Mm.389417	NR_040559	ENSMUSG00000106461	Gm20755	-	predicted gene, 20755	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163100689-4	chr2	163100183	163101183	+	931.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11082.0	NM_026630	68236.0	Mm.33648	NM_026630	ENSMUSG00000070708	Gtsf1l	2410116G06Rik	gametocyte specific factor 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56396323-3	chr19	56395813	56396813	+	931.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007611)	promoter-TSS (NM_007611)	-816.0	NM_007611	12369.0	Mm.35687	NM_007611	ENSMUSG00000025076	Casp7	AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7	caspase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83878359-4	chr7	83877846	83878846	+	931.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5995.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	8.5	6.5	15.5	8.0	29.0	23.5
Merged-chr15-76242618-2	chr15	76242118	76243118	+	931.3333130000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163575, exon 4 of 11)	exon (NM_001163575, exon 4 of 11)	822.0	NM_001163576	671535.0	Mm.373750	NM_001163575	ENSMUSG00000063268	Parp10	-	poly (ADP-ribose) polymerase family, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6565979-3	chr2	6565508	6566508	+	931.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 11 of 15)	intron (NM_001110232, intron 11 of 15)	155654.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92801800-4	chr16	92801292	92802292	+	931.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	24282.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5094459-4	chr19	5094045	5095045	+	931.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009920, intron 2 of 5)	intron (NM_009920, intron 2 of 5)	3976.0	NM_001302333	12794.0	Mm.299737	NM_009920	ENSMUSG00000024873	Cnih2	CNIH-2|Cnil	cornichon family AMPA receptor auxiliary protein 2	protein-coding	0.0	0.0	4.0	0.0	2.5	1.0
Merged-chr9-111081011-4	chr9	111080496	111081496	+	931.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23478.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37245718-4	chr9	37245197	37246197	+	931.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145960, intron 1 of 18)	intron (NM_001145960, intron 1 of 18)	10041.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-89202361-4	chr9	89201894	89202894	+	931.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007534, intron 1 of 1)	intron (NM_007534, intron 1 of 1)	3121.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	0.0	0.0	0.0	12.0	18.0	24.5
Merged-chr17-26750127-4	chr17	26749639	26750639	+	931.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029870, intron 4 of 8)	intron (NM_029870, intron 4 of 8)	-30940.0	NM_172149	224630.0	Mm.21795	NM_172149	ENSMUSG00000024191	Bnip1	2010005M06Rik|5930429G21Rik|Sec20	BCL2/adenovirus E1B interacting protein 1	protein-coding	0.0	1.0	1.0	0.5	1.0	1.5
Merged-chr11-79523757-4	chr11	79523257	79524257	+	931.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077496)	promoter-TSS (NM_001077496)	5.0	NM_001077496	216984.0	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	25.5	55.0	29.0	17.5	42.0	14.0
Merged-chr4-10920600-6	chr4	10920181	10921181	+	931.263916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	46183.0	NM_026005	67157.0	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	27.0	60.5	70.5	16.5	37.5	31.0
Merged-chr15-36727896-7	chr15	36727353	36728353	+	931.261902	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C-int|LTR|ERVK	63079.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39901449-7	chr1	39900959	39901959	+	931.261902	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 1 of 29)	CpG	546.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-154105006-4	chr1	154104514	154105514	+	931.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-96173.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143005339-2	chr7	143004839	143005839	+	931.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001128082)	promoter-TSS (NM_001128082)	293.0	NM_001128080	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr10-128524835-2	chr10	128524335	128525335	+	931.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011843, intron 1 of 30)	intron (NM_011843, intron 1 of 30)	1024.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143139058-2	chr7	143138558	143139558	+	931.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008434, intron 1 of 15)	intron (NM_008434, intron 1 of 15)	31804.0	NM_008434	16535.0	Mm.439769	NM_008434	ENSMUSG00000009545	Kcnq1	AW559127|KVLQT1|Kcna9	potassium voltage-gated channel, subfamily Q, member 1	protein-coding	0.0	0.0	0.0	0.0	4.0	0.0
Merged-chr14-120741861-4	chr14	120741351	120742351	+	931.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-169343.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83857345-4	chr7	83856851	83857851	+	931.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26990.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	19.5	12.5	11.5	1.0	7.5	11.5
Merged-chr7-16246154-2	chr7	16245624	16246624	+	931.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007577)	TTS (NM_007577)	-1970.0	NM_176912	319430.0	Mm.239570	NM_176912	ENSMUSG00000074361	C5ar2	C5L2|E030029A11Rik|Gpr77	complement component 5a receptor 2	protein-coding	0.0	5.5	6.5	1.0	5.5	2.5
Merged-chr19-45017510-4	chr19	45017019	45018019	+	931.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130526)	promoter-TSS (NM_001130526)	-616.0	NM_001130526	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148075541-4	chr4	148075032	148076032	+	931.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12532.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-17170135-3	chr11	17169658	17170658	+	931.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024459, intron 1 of 5)	intron (NM_024459, intron 1 of 5)	10860.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-12745495-3	chr2	12744987	12745987	+	931.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-178554.0	NM_008961	19212.0	Mm.229322	NM_008961	ENSMUSG00000026730	Pter	AI790318|Mpr56-1	phosphotriesterase related	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-57196869-3	chr12	57196371	57197371	+	931.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172577, intron 1 of 9)	CpG	601.0	NM_172577	217593.0	Mm.32835	NM_172577	ENSMUSG00000035472	Slc25a21	9930033G19Rik|A630030I10|BB158148	solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21	protein-coding	3.0	0.0	0.0	2.5	0.0	2.5
Merged-chr19-5599396-3	chr19	5598905	5599905	+	931.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2468.0	NM_026616	68209.0	Mm.246200	NM_026616	ENSMUSG00000024925	Rnaseh2c	1500026D16Rik|AYP1	ribonuclease H2, subunit C	protein-coding	0.0	3.0	0.0	4.5	7.5	2.0
Merged-chr3-146331120-4	chr3	146330606	146331606	+	931.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47838.0	NR_033542	100038607.0	Mm.365888	NR_033542	ENSMUSG00000105602	Gm10636	-	predicted gene 10636	ncRNA	0.0	7.0	0.5	1.0	0.0	1.0
Merged-chr11-63806755-4	chr11	63806234	63807234	+	931.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	115550.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	1.0	10.0	12.5	0.0	1.5	0.0
Merged-chr2-126600683-4	chr2	126600195	126601195	+	931.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008230, intron 9 of 11)	intron (NM_008230, intron 9 of 11)	17983.0	NM_008230	15186.0	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134179982-4	chr5	134179460	134180460	+	931.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3193.0	NM_033572	94254.0	Mm.29508	NM_033572	ENSMUSG00000061979	Rcc1l	5730496C04Rik|AU019812|Wbscr16	reculator of chromosome condensation 1 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80995385-4	chr10	80994855	80995855	+	931.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	6010.0	NM_001038655	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119402565-4	chr9	119402088	119403088	+	931.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001313757, exon 1 of 11)	exon (NM_001313757, exon 1 of 11)	410.0	NM_001313757	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	0.0	2.5	1.0	0.0	7.5	0.0
Merged-chr8-104395693-5	chr8	104395113	104396113	+	931.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153582, exon 1 of 4)	exon (NM_153582, exon 1 of 4)	194.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11174039-3	chr8	11173538	11174538	+	931.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138767.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118619997-2	chr9	118619497	118620497	+	931.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	B4A|SINE|B4	13288.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19217049-2	chr10	19216549	19217549	+	931.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	49811.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	10.5	33.5	27.0	10.5	35.0	24.5
Merged-chr5-67821040-3	chr5	67820528	67821528	+	931.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	26403.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65873260-3	chr5	65872797	65873797	+	931.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	9728.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	18.0	24.0	17.0	18.5	23.5	19.5
Merged-chr3-87340498-2	chr3	87340003	87341003	+	931.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-17378.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	26.5	58.0	49.0	21.0	62.5	68.5
Merged-chr17-34260776-2	chr17	34260274	34261274	+	931.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-2453.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	47.5	149.0	60.5	54.0	238.0	107.5
Merged-chr1-166001732-7	chr1	166001115	166002115	+	931.161926	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198932, intron 1 of 15)	CpG	1019.0	NM_011137	18986.0	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122986779-4	chr14	122986425	122987425	+	931.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3642.0	NR_153663	70551.0	Mm.271988	NM_028651	ENSMUSG00000041594	Tmtc4	4930403J22Rik|5730419O14Rik	transmembrane and tetratricopeptide repeat containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43775454-4	chr13	43774925	43775925	+	931.145874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9687.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129310848-4	chr2	129310486	129311486	+	931.142822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1014.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	49.0	206.0	97.5	87.0	222.5	127.5
Merged-chr6-37441151-4	chr6	37440646	37441646	+	931.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	1002.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41568569-4	chr4	41568087	41569087	+	931.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027993, intron 1 of 5)	intron (NM_027993, intron 1 of 5)	940.0	NM_001159583	71901.0	Mm.39215	NM_027993	ENSMUSG00000028439	Fam219a	2310028H24Rik	family with sequence similarity 219, member A	protein-coding	22.5	35.0	59.0	19.0	31.5	49.5
Merged-chr2-143837425-4	chr2	143836951	143837951	+	931.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291061, intron 5 of 7)	intron (NM_001291061, intron 5 of 7)	25722.0	NM_009751	12075.0	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6036361-3	chr19	6035849	6036849	+	931.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10227.0	NM_028769	74126.0	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	4.0	4.0	0.0	5.0	0.0	6.5
Merged-chr11-89028902-4	chr11	89028434	89029434	+	931.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29531.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	226.5	447.0	279.5	63.0	118.0	70.0
Merged-chr1-125430976-3	chr1	125430482	125431482	+	931.0833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205386, intron 2 of 12)	B1F1|SINE|Alu	4745.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-32801045-4	chr13	32800547	32801547	+	931.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030215)	promoter-TSS (NM_030215)	-983.0	NM_030215	78903.0	Mm.286680	NM_030215	ENSMUSG00000021400	Wrnip1	4833444L21Rik|WHIP|Wrnip	Werner helicase interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16222709-3	chr19	16222183	16223183	+	931.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 2 of 6)	intron (NM_008139, intron 2 of 6)	58585.0	NR_033228	595139.0	Mm.405662	NR_033228		E030024N20Rik	9030417F11Rik|Ppia-ps8	peptidylprolyl isomerase A pseudogene 8	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-49364046-4	chr2	49363607	49364607	+	931.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1-int|LTR|ERVL-MaLR	-87379.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80320101-4	chr12	80319604	80320604	+	931.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59723.0	NM_001346669	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136897362-3	chr4	136896888	136897888	+	931.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007572, intron 2 of 2)	MIRc|SINE|MIR	1456.0	NM_007572	12259.0	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	140.0	381.5	383.5	165.5	475.5	402.5
Merged-chr14-99970389-4	chr14	99969882	99970882	+	931.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010636, intron 4 of 6)	intron (NM_010636, intron 4 of 6)	179414.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-44049738-4	chr14	44049245	44050245	+	931.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43327.0	NM_001011876	630952.0		NM_001011876	ENSMUSG00000072598	Ang6	EG630952	angiogenin, ribonuclease A family, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-19673171-4	chr4	19672654	19673654	+	931.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_074089, intron 4 of 23)	intron (NR_074089, intron 4 of 23)	35850.0	NM_177327	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-127169146-3	chr4	127168645	127169645	+	931.0277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198618)	promoter-TSS (NM_198618)	-59.0	NM_198618	242667.0	Mm.331885	NM_198618	ENSMUSG00000042388	Dlgap3	BC058433|DAP-3|DAP3|Prpl8|Sapap3	DLG associated protein 3	protein-coding	2.5	2.0	0.0	0.0	0.0	0.0
Merged-chr10-13104005-4	chr10	13103506	13104506	+	931.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009538, intron 1 of 5)	intron (NM_009538, intron 1 of 5)	13161.0	NR_131912	338438.0		NR_131912		Hymai	-	hydatidiform mole associated and imprinted transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-94658848-4	chr3	94658345	94659345	+	931.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011656)	promoter-TSS (NM_011656)	27.0	NM_001293728	22156.0	Mm.10214	NM_011656	ENSMUSG00000005968	Tuft1	-	tuftelin 1	protein-coding	0.0	0.0	0.0	0.0	2.5	0.0
Merged-chr8-123030171-1	chr8	123029671	123030671	+	931.0	f1_balb.idr	intron (NM_001081379, intron 1 of 12)	(TG)n|Simple_repeat|Simple_repeat	12113.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0.0	3.0	1.5	0.0	0.0	0.0
Merged-chr5-24048006-3	chr5	24047512	24048512	+	931.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17322.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	20.0	43.0	43.5	46.0	49.0	33.5
Merged-chr18-10136594-4	chr18	10136122	10137122	+	931.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009071, intron 4 of 32)	intron (NM_009071, intron 4 of 32)	45170.0	NM_009071	19877.0	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45090382-2	chr2	45089882	45090882	+	931.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	19895.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-60989439-2	chr14	60988939	60989939	+	931.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013869, intron 5 of 9)	intron (NM_013869, intron 5 of 9)	48548.0	NM_001164155	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	3.0	3.0	1.5	0.0	1.5	2.5
Merged-chr3-96579226-2	chr3	96578726	96579726	+	931.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027241, intron 7 of 7)	RSINE1|SINE|B4	-12425.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	13.0	30.5	11.0	13.0	31.0	10.5
Merged-chr14-62328615-4	chr14	62328098	62329098	+	931.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3470.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-13606620-6	chr6	13606185	13607185	+	931.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028990, intron 1 of 4)	L2|LINE|L2	1413.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	33.0	64.0	66.0	32.5	87.0	68.0
Merged-chr15-98729111-2	chr15	98728611	98729611	+	931.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024169)	promoter-TSS (NM_024169)	-913.0	NM_024169	66120.0	Mm.30729	NM_024169	ENSMUSG00000003355	Fkbp11	1110002O23Rik|FKBP-11	FK506 binding protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38947379-2	chr6	38946879	38947879	+	931.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	intron (NM_011539, intron 1 of 12)	28393.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98977503-4	chr15	98977016	98978016	+	931.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8449.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-17880230-2	chr18	17879730	17880730	+	931.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-299240.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125344922-2	chr5	125344422	125345422	+	931.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3828.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	4.0	4.0	1.5	0.0	0.0	0.0
Merged-chr14-55147709-2	chr14	55147209	55148209	+	931.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30774.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28926694-2	chr17	28926194	28927194	+	931.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11370.0	NM_172450	207819.0	Mm.248931	NM_172450	ENSMUSG00000048905	4930539E08Rik	9130014G02	RIKEN cDNA 4930539E08 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35031423-2	chr7	35030923	35031923	+	931.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008820, exon 12 of 15)	exon (NM_008820, exon 12 of 15)	25143.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45572961-2	chr13	45572461	45573461	+	931.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 5 of 6)	intron (NM_001199304, intron 5 of 6)	65517.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-154036961-4	chr1	154036454	154037454	+	931.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137025.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47522659-1	chr17	47522159	47523159	+	931.0	f0_balb.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	17608.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164813821-1	chr2	164813321	164814321	+	931.0	f1_c57bl6.idr	intron (NM_178375, intron 1 of 1)	MTD|LTR|ERVL-MaLR	8707.0	NM_178375	67538.0	Mm.33184	NM_178375	ENSMUSG00000045822	Zswim3	4921517A06Rik|C86566	zinc finger SWIM-type containing 3	protein-coding	1.5	3.5	0.0	1.5	3.5	0.0
Merged-chr19-5638440-2	chr19	5637940	5638940	+	931.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009045, exon 2 of 11)	exon (NM_009045, exon 2 of 11)	950.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	0.0	8.5	0.0	1.5	7.0	3.5
Merged-chr12-33578139-3	chr12	33577649	33578649	+	931.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	148525.0	NM_172253	28071.0	Mm.196472	NM_172253	ENSMUSG00000020561	Twistnb	2410173G11|2810024J17Rik|D16Wsu83e	twist basic helix-loop-helix transcription factor 1 neighbor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116530463-2	chr7	116529963	116530963	+	931.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360375, intron 11 of 14)	intron (NM_001360375, intron 11 of 14)	26094.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49246228-2	chr11	49245728	49246728	+	931.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010794, intron 2 of 2)	intron (NM_010794, intron 2 of 2)	-1249.0	NM_001110149	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121641578-4	chr9	121641070	121642070	+	931.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026915)	promoter-TSS (NM_026915)	23.0	NM_026915	69032.0	Mm.33351	NM_026915	ENSMUSG00000032530	Lyzl4	1810009N24Rik|AI504271|Lyc4|Lyza	lysozyme-like 4	protein-coding	12.5	41.0	16.5	6.0	31.5	24.0
Merged-chr10-52309375-4	chr10	52308862	52309862	+	931.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025705, intron 6 of 10)	intron (NM_025705, intron 6 of 10)	72762.0	NM_053187	94221.0	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37250230-3	chr10	37249744	37250744	+	931.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111318.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-31057494-1	chr7	31056994	31057994	+	931.0	f1_balb.idr	Intergenic	MIR|SINE|MIR	-1838.0	NM_019503	56188.0	Mm.1491	NM_019503	ENSMUSG00000036570	Fxyd1	0610012C17Rik|1110006M24Rik|Plm|Pml	FXYD domain-containing ion transport regulator 1	protein-coding	0.0	1.5	1.0	0.0	0.0	0.5
Merged-chr11-98942900-5	chr11	98942372	98943372	+	931.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177303, intron 1 of 8)	intron (NM_001177303, intron 1 of 8)	3161.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84121541-4	chr17	84121032	84122032	+	931.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42872.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19069675-2	chr7	19069175	19070175	+	931.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031255, intron 5 of 5)	B3A|SINE|B2	-6525.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50931829-4	chr14	50931336	50932336	+	931.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310505)	promoter-TSS (NM_001310505)	-987.0	NM_001310507	219024.0	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161|Pip4p1	transmembrane protein 55b	protein-coding	10.5	30.5	22.5	8.0	14.5	22.5
Merged-chr1-34826090-4	chr1	34825598	34826598	+	930.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160235, intron 3 of 7)	intron (NM_001160235, intron 3 of 7)	16952.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21045672-4	chr5	21045186	21046186	+	930.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011203, intron 1 of 17)	MTD|LTR|ERVL-MaLR	10225.0	NM_001356591	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-109232072-4	chr13	109231584	109232584	+	930.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-92660.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21274950-4	chr19	21274400	21275400	+	930.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009551, intron 1 of 5)	intron (NM_009551, intron 1 of 5)	2622.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	108.5	205.0	219.0	107.0	179.5	205.0
Merged-chr15-25859649-4	chr15	25859134	25860134	+	930.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 1 of 8)	MLT1A1|LTR|ERVL-MaLR	16336.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-3427287-3	chr6	3426782	3427782	+	930.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27711.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	14.0	0.5	3.0	0.0	2.0	1.5
Merged-chr9-95639030-4	chr9	95638531	95639531	+	930.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 2 of 8)	intron (NM_029620, intron 2 of 8)	1403.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-143139666-4	chr6	143139146	143140146	+	930.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153819, intron 5 of 8)	intron (NR_153819, intron 5 of 8)	14285.0	NR_153819	102633311.0	Mm.333484	NR_153819		Gm31108	Gm31169	predicted gene, 31108	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75710407-4	chr10	75709911	75710911	+	930.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172549, intron 26 of 36)	intron (NM_172549, intron 26 of 36)	53946.0	NM_172549	104248.0	Mm.257404	NM_172549	ENSMUSG00000020196	Cabin1	A330070M20Rik|Cain|Ppp3in	calcineurin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-56336729-4	chr12	56336218	56337218	+	930.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145442, intron 6 of 8)	intron (NM_145442, intron 6 of 8)	9176.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72208679-4	chr5	72208172	72209172	+	930.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 1 of 22)	intron (NR_003966, intron 1 of 22)	5329.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-92358198-2	chr8	92357698	92358698	+	930.916626	f1_balb.idr|f1_c57bl6.idr	exon (NM_018826, exon 1 of 3)	exon (NM_018826, exon 1 of 3)	402.0	NM_018826	54352.0	Mm.101153	NM_018826	ENSMUSG00000031737	Irx5	-	Iroquois homeobox 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121605613-4	chr9	121605118	121606118	+	930.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040740, intron 3 of 3)	intron (NR_040740, intron 3 of 3)	18598.0	NR_040740	75384.0	Mm.445955	NR_040740	ENSMUSG00000084995	Lyzl4os	4930589B17Rik|4930596M17Rik	lysozyme-like 4, opposite strand	ncRNA	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-45624035-3	chr11	45623509	45624509	+	930.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-184074.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	6.0	25.5	13.0	41.5	69.0	49.0
Merged-chr3-37584783-3	chr3	37584306	37585306	+	930.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25085.0	NR_130162	75947.0	Mm.109620	NR_130161	ENSMUSG00000085677	4930594O21Rik	-	RIKEN cDNA 4930594O21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109130342-4	chr3	109129853	109130853	+	930.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172685, intron 1 of 9)	intron (NM_172685, intron 1 of 9)	7204.0	NM_172685	229731.0	Mm.33574	NM_172685	ENSMUSG00000040322	Slc25a24	2610016M12Rik	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-89089183-4	chr18	89088686	89089686	+	930.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175542, intron 35 of 48)	ORR1E|LTR|ERVL-MaLR	-108241.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133752869-8	chr4	133752332	133753332	+	930.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001080819, exon 1 of 20)	exon (NM_001080819, exon 1 of 20)	779.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	11.5	43.5	42.0	13.5	48.0	44.5
Merged-chr5-123508330-4	chr5	123507856	123508856	+	930.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001289822)	TTS (NM_001289822)	-2104.0	NM_198611	231727.0	Mm.484068	NM_198611	ENSMUSG00000029431	B3gnt4	1010001G17Rik|BGnT-4	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4	protein-coding	5.0	6.5	0.5	8.5	7.5	9.0
Merged-chr3-31058494-2	chr3	31057999	31058999	+	930.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	19533.0	NR_105975	102465610.0		NR_105975	ENSMUSG00000098890	Mir7008	Gm27752|mmu-mir-7008	microRNA 7008	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84189267-4	chr12	84188773	84189773	+	930.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	4742.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-90492778-4	chr11	90492264	90493264	+	930.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011505, intron 17 of 17)	intron (NM_011505, intron 17 of 17)	-101847.0	NM_172563	217082.0	Mm.158903	NM_172563	ENSMUSG00000003949	Hlf	E230015K02Rik	hepatic leukemia factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-101120429-4	chr10	101119916	101120916	+	930.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-378781.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82270370-3	chr11	82269874	82270874	+	930.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90562.0	NM_011329	20290.0	Mm.1283	NM_011329	ENSMUSG00000020702	Ccl1	BF534335|I-309|P500|Scya1|Tca-3|Tca3	chemokine (C-C motif) ligand 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-12612630-3	chr10	12612143	12613143	+	930.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 50 of 73)	intron (NM_011682, intron 50 of 73)	249092.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	2.5	1.5	1.0	1.5	15.0	1.0
Merged-chr2-181659366-4	chr2	181658886	181659886	+	930.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12254.0	NM_009236	20672.0	Mm.264904	NM_009236	ENSMUSG00000046470	Sox18	AI385749|Ra|Ragl	SRY (sex determining region Y)-box 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98788118-2	chr11	98787618	98788618	+	930.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-7398.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105709707-4	chr3	105709208	105710208	+	930.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163356, intron 1 of 1)	intron (NM_001163356, intron 1 of 1)	4250.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	7.0	7.0	8.0	8.5	6.0	4.5
Merged-chr3-15264625-3	chr3	15264112	15265112	+	930.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67690.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	9.5	3.0	1.0	1.5	0.0	0.5
Merged-chr12-25398923-4	chr12	25398435	25399435	+	930.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	269761.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.5	8.0	3.5	1.5	3.0	0.5
Merged-chr18-38144855-4	chr18	38144364	38145364	+	930.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64898.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137294116-2	chr5	137293616	137294616	+	930.8333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027356)	promoter-TSS (NM_027356)	336.0	NR_106196	102466887.0		NR_106196	ENSMUSG00000099145	Mir8116	Gm27485|mmu-mir-8116	microRNA 8116	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-136708461-4	chr3	136707969	136708969	+	930.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	38403.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69654690-3	chr11	69654232	69655232	+	930.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009235)	promoter-TSS (NM_009235)	-305.0	NM_009235	20670.0	Mm.347499	NM_009235	ENSMUSG00000041287	Sox15	-	SRY (sex determining region Y)-box 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83706626-8	chr17	83706058	83707058	+	930.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 1 of 16)	intron (NM_054082, intron 1 of 16)	395.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-104023711-4	chr5	104023208	104024208	+	930.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1912.0	NM_053262	114664.0	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105066621-5	chr3	105066148	105067148	+	930.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029228)	promoter-TSS (NM_029228)	-196.0	NM_029228	75269.0	Mm.307994	NM_029228	ENSMUSG00000051788	4930564D02Rik	-	RIKEN cDNA 4930564D02 gene	protein-coding	9.0	22.5	18.5	3.5	16.5	13.5
Merged-chr15-63613293-4	chr15	63612775	63613775	+	930.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-133667.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	39.5	63.0	49.0	20.5	67.5	59.5
Merged-chr19-56723967-4	chr19	56723477	56724477	+	930.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007419, exon 1 of 1)	3' UTR (NM_007419, exon 1 of 1)	1605.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	15.5	33.5	19.5	3.0	10.0	4.0
Merged-chr1-157047691-4	chr1	157047233	157048233	+	930.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60917.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	40.5	90.5	74.0	59.0	185.5	101.0
Merged-chr11-69414619-4	chr11	69414100	69415100	+	930.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001017426)	promoter-TSS (NM_001017426)	-925.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	8.0	10.5	8.5	5.0	15.5	14.5
Merged-chr5-22898776-3	chr5	22898286	22899286	+	930.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359998, intron 1 of 3)	MIR3|SINE|MIR	-151902.0	NR_027362	330052.0	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	24.5	23.0	31.5	10.5	4.0	3.5
Merged-chr7-28053659-3	chr7	28053172	28054172	+	930.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3580.0	NM_011874	23996.0	Mm.29582	NM_011874	ENSMUSG00000030603	Psmc4	CIP21|MIP224	proteasome (prosome, macropain) 26S subunit, ATPase, 4	protein-coding	4.0	16.0	2.0	3.0	4.0	1.0
Merged-chr13-30949412-4	chr13	30948902	30949902	+	930.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360093, intron 1 of 28)	intron (NM_001360093, intron 1 of 28)	896.0	NM_001360093	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91528661-2	chr16	91528149	91529149	+	930.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-1105.0	NR_105786	102465190.0		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	0.0	4.5	3.5	9.0	0.0	0.0
Merged-chr16-97996065-8	chr16	97995568	97996568	+	930.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1247.0	NM_001362093	245305.0	Mm.148033	NM_001362093		B230307C23Rik	8030444G23Rik|EG245305	RIKEN cDNA B230307C23 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56289626-2	chr17	56289126	56290126	+	930.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_025836, intron 1 of 7)	intron (NM_025836, intron 1 of 7)	885.0	NM_025836	66905.0	Mm.311696	NM_025836	ENSMUSG00000024197	Plin3	1300012C15Rik|M6prbp1|Tip47	perilipin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89238512-4	chr3	89238011	89239011	+	930.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039466, intron 7 of 8)	intron (NM_001039466, intron 7 of 8)	6502.0	NR_121683	360213.0	Mm.331156	NM_183037	ENSMUSG00000042766	Trim46	TRIFIC	tripartite motif-containing 46	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-116727440-4	chr10	116726970	116727970	+	930.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045345, intron 1 of 2)	L1MDa|LINE|L1	1707.0	NR_045345	72286.0	Mm.396207	NR_045345	ENSMUSG00000100198	1700030O20Rik	-	RIKEN cDNA 1700030O20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68548598-4	chr11	68548100	68549100	+	930.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004435, intron 18 of 19)	intron (NM_001004435, intron 18 of 19)	-7586.0	NM_146004	215723.0	Mm.131205	NM_146004	ENSMUSG00000048329	Mfsd6l	-	major facilitator superfamily domain containing 6-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-96476919-4	chr7	96476403	96477403	+	930.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 3 of 32)	intron (NM_011858, intron 3 of 32)	-134939.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	10.0	12.5	20.0	11.5	24.0	12.0
Merged-chr7-19676896-4	chr7	19676404	19677404	+	930.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277944, intron 1 of 4)	intron (NM_001277944, intron 1 of 4)	1037.0	NM_001277944	11813.0	Mm.28394	NM_001277944	ENSMUSG00000002992	Apoc2	apo-CII|apoC-II	apolipoprotein C-II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6127047-4	chr19	6126662	6127662	+	930.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026912, intron 1 of 7)	intron (NM_026912, intron 1 of 7)	1053.0	NM_026912	69024.0	Mm.329629	NM_026912	ENSMUSG00000024787	Snx15	1500032B08Rik|E130013C21Rik	sorting nexin 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103375480-2	chr11	103374980	103375980	+	930.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 7 of 11)	intron (NM_183034, intron 7 of 11)	-11788.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0.0	0.0	0.5	0.0	0.0	2.0
Merged-chr16-32699950-2	chr16	32699450	32700450	+	930.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26796.0	NM_001289443	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164067284-3	chr2	164066807	164067807	+	930.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291155, intron 1 of 6)	intron (NM_001291155, intron 1 of 6)	3795.0	NM_025996	67145.0	Mm.23173	NM_025996	ENSMUSG00000018322	Tomm34	2610100K07Rik|TOM34	translocase of outer mitochondrial membrane 34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11812174-4	chr11	11811667	11812667	+	930.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3205.0	NM_001163360	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr10-80623735-4	chr10	80623246	80624246	+	930.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134002, intron 1 of 10)	intron (NM_134002, intron 1 of 10)	966.0	NM_134002	103236.0	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104790540-4	chr3	104790047	104791047	+	930.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291859, intron 1 of 4)	intron (NM_001291859, intron 1 of 4)	1513.0	NM_001291859	11853.0	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-82257080-3	chr12	82256554	82257554	+	930.7000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 2 of 23)	intron (NM_001167983, intron 2 of 23)	-54295.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-52141402-4	chr14	52140891	52141891	+	930.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023879, intron 14 of 24)	intron (NM_023879, intron 14 of 24)	30488.0	NM_023879	77945.0	Mm.21662	NM_023879	ENSMUSG00000057132	Rpgrip1	0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding	14.5	17.5	27.5	6.5	4.0	13.0
Merged-chr11-119238302-7	chr11	119237788	119238788	+	930.6785890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175430, intron 6 of 18)	(TTTG)n|Simple_repeat|Simple_repeat	9716.0	NM_175430	207607.0	Mm.189885	NM_175430	ENSMUSG00000039963	Ccdc40	B930008I02Rik	coiled-coil domain containing 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29768988-3	chr6	29768525	29769525	+	930.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	CpG	582.0	NM_001171000	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20836200-3	chr14	20835695	20836695	+	930.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008873)	promoter-TSS (NM_008873)	-467.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	31.5	95.5	72.0	46.0	67.5	49.0
Merged-chr6-129171841-4	chr6	129171356	129172356	+	930.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8759.0	NM_053109	93694.0	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75317251-6	chr10	75316944	75317944	+	930.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331095)	promoter-TSS (NM_001331095)	-156.0	NM_001331095	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11589595-4	chr2	11589108	11590108	+	930.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152824, intron 7 of 11)	intron (NM_152824, intron 7 of 11)	13591.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137645311-3	chr5	137644802	137645802	+	930.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010571, exon 1 of 2)	exon (NM_010571, exon 1 of 2)	412.0	NM_010571	16369.0	Mm.24486	NM_010571	ENSMUSG00000047182	Irs3	AA408304	insulin receptor substrate 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-41494872-3	chr12	41494377	41495377	+	930.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	-8820.0	NM_010733	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40202407-3	chr4	40201905	40202905	+	930.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	37420.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120620916-2	chr5	120620416	120621416	+	930.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028041, intron 10 of 19)	intron (NM_028041, intron 10 of 19)	7786.0	NM_028041	71990.0	Mm.24495	NM_028041	ENSMUSG00000029599	Ddx54	2410015A15Rik|AI414901|DP97	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80497363-4	chr17	80496874	80497874	+	930.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16921.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-95695583-4	chr12	95695090	95696090	+	930.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201518, intron 1 of 1)	CpG	3364.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110993270-4	chr11	110992776	110993776	+	930.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252207, intron 2 of 2)	intron (NM_001252207, intron 2 of 2)	-4211.0	NM_001252209	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	159.5	394.0	278.0	171.5	271.0	260.5
Merged-chr16-14365707-4	chr16	14365215	14366215	+	930.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008576, intron 1 of 30)	intron (NM_008576, intron 1 of 30)	4157.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	2.0	15.0	11.5	5.5	2.5	4.0
Merged-chr4-35240077-4	chr4	35239564	35240564	+	930.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14184.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44286608-4	chr9	44286110	44287110	+	930.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138955, intron 2 of 14)	MIRc|SINE|MIR	1634.0	NM_138955	192663.0	Mm.101876	NM_138955	ENSMUSG00000032131	Abcg4	6430517O04Rik	ATP binding cassette subfamily G member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38360243-4	chr6	38359727	38360727	+	930.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5624.0	NM_028864	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173356242-3	chr2	173355725	173356725	+	930.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	-79692.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158121876-6	chr2	158121431	158122431	+	930.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 10 of 12)	(GA)n|Simple_repeat|Simple_repeat	24461.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-127108464-3	chr6	127107934	127108934	+	930.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177003, intron 1 of 5)	intron (NM_177003, intron 1 of 5)	1118.0	NM_177003	319801.0	Mm.101836	NM_177003	ENSMUSG00000038028	Tigar	9630033F20Rik|AA793651|AI595337|C79710|C85509	Trp53 induced glycolysis repulatory phosphatase	protein-coding	0.0	0.0	0.0	1.0	0.0	6.0
Merged-chr10-127050292-4	chr10	127049774	127050774	+	930.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010009, exon 5 of 9)	exon (NM_010009, exon 5 of 9)	2028.0	NM_010009	13115.0	Mm.6216	NM_010009	ENSMUSG00000006724	Cyp27b1	Cp2b|Cyp1|Cyp27b|Cyp40|P450c1|Pddr|Vdd1|Vddr|VddrI|Vdr	cytochrome P450, family 27, subfamily b, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31447705-4	chr2	31447188	31448188	+	930.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22582.0	NM_007494	11898.0	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52411463-4	chr6	52410969	52411969	+	930.604126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80982.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71251346-4	chr17	71250813	71251813	+	930.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357336)	TTS (NM_001357336)	46659.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	3.0	8.5	5.5	10.0	25.0	25.5
Merged-chr14-47541883-4	chr14	47541383	47542383	+	930.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172599, exon 10 of 10)	3' UTR (NM_172599, exon 10 of 10)	26551.0	NM_172599	100504663.0	Mm.287279	NM_172599	ENSMUSG00000037526	Atg14	4832427M01|Atg14L|D14Ertd114e|D14Ertd436e	autophagy related 14	protein-coding	40.0	77.5	133.0	17.0	55.5	37.0
Merged-chr9-114592490-4	chr9	114591969	114592969	+	930.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153585, intron 18 of 19)	intron (NM_153585, intron 18 of 19)	-28100.0	NM_001042503	636931.0	Mm.17857	NM_001042503	ENSMUSG00000079259	Trim71	2610206G21Rik|AL022943|Gm1127|Lin41|lin-41|mLin41|mlin-41	tripartite motif-containing 71	protein-coding	1.0	6.0	1.0	0.0	0.0	0.0
Merged-chr14-55784050-4	chr14	55783539	55784539	+	930.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361604)	promoter-TSS (NM_001361604)	33.0	NM_080435	104110.0	Mm.287010	NM_080435	ENSMUSG00000022220	Adcy4	mKIAA4004	adenylate cyclase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98307470-3	chr7	98306953	98307953	+	930.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360615, intron 1 of 10)	intron (NM_001360615, intron 1 of 10)	2089.0	NM_001360616	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11231466-4	chr19	11230966	11231966	+	930.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045317, intron 1 of 2)	intron (NR_045317, intron 1 of 2)	34649.0	NR_045317	75138.0	Mm.490787	NR_045317	ENSMUSG00000097091	4930526L06Rik	-	RIKEN cDNA 4930526L06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107935021-3	chr13	107934480	107935480	+	930.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44916.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	11.5	3.5	15.5	9.0	6.5	1.5
Merged-chr5-134227994-8	chr5	134227490	134228490	+	930.5520630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010876, intron 2 of 10)	B1F1|SINE|Alu	1635.0	NM_001286037	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-78206283-5	chr12	78205739	78206739	+	930.542847	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20416.0	NM_172952	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-13839326-4	chr6	13838834	13839834	+	930.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145066, intron 1 of 3)	intron (NM_145066, intron 1 of 3)	608.0	NM_001330666	64450.0	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84479255-4	chr2	84478763	84479763	+	930.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR18-int|LTR|ERVK	-2488.0	NM_001177320	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-144963572-4	chr5	144963090	144964090	+	930.537476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038627, intron 1 of 17)	intron (NM_001038627, intron 1 of 17)	2240.0	NM_001038627	75788.0	Mm.27735	NM_029438	ENSMUSG00000038780	Smurf1	4930431E10Rik|mKIAA1625	SMAD specific E3 ubiquitin protein ligase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25282113-4	chr15	25281608	25282608	+	930.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	131656.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9932460-2	chr19	9931976	9932976	+	930.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-32943.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	19.5	20.5	28.0	12.5	16.5	36.0
Merged-chr2-59246304-3	chr2	59245791	59246791	+	930.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	URR1B|DNA|hAT-Charlie	85441.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129066550-3	chr2	129066040	129067040	+	930.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027192, intron 1 of 6)	intron (NM_027192, intron 1 of 6)	593.0	NM_027192	69737.0	Mm.33909	NM_027192	ENSMUSG00000027394	Ttl	2410003M22Rik|2700049H19Rik|AI848570	tubulin tyrosine ligase	protein-coding	4.5	8.0	0.0	2.0	0.0	3.5
Merged-chr9-85592755-3	chr9	85592270	85593270	+	930.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	156564.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr8-69886404-2	chr8	69885915	69886915	+	930.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026818, intron 2 of 7)	intron (NM_026818, intron 2 of 7)	977.0	NM_026818	68709.0	Mm.334584	NM_026818	ENSMUSG00000044006	Cilp2	1110031K21Rik|AA407300|CLIP-2	cartilage intermediate layer protein 2	protein-coding	6.0	0.0	0.0	0.0	0.5	0.5
Merged-chr15-58472542-4	chr15	58472040	58473040	+	930.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57072.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124812448-2	chr6	124811948	124812948	+	930.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009415, exon 4 of 7)	exon (NM_009415, exon 4 of 7)	1848.0	NM_009415	21991.0	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|TIM|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133662543-3	chr4	133662093	133663093	+	930.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001145956, exon 3 of 3)	exon (NM_001145956, exon 3 of 3)	10054.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	3.5	7.0	0.5	93.0	162.5	125.0
Merged-chr2-71274999-2	chr2	71274499	71275499	+	930.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172436, exon 18 of 18)	3' UTR (NM_172436, exon 18 of 18)	63053.0	NM_010064	13427.0	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-33001850-3	chr13	33001346	33002346	+	930.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-2695.0	NM_009256	20723.0	Mm.245041	NM_009256	ENSMUSG00000045827	Serpinb9	BB283241|CAP-3|CAP3|PI-9|PI9|Spi6|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120467190-4	chr6	120466701	120467701	+	930.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 1 of 12)	intron (NM_008359, intron 1 of 12)	4004.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106335437-2	chr8	106334937	106335937	+	930.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_126090, exon 4 of 4)	non-coding (NR_126090, exon 4 of 4)	2551.0	NM_021491	58994.0	Mm.23298	NM_021491	ENSMUSG00000031906	Smpd3	4631433G07Rik|AI427456|AW537966|fro|nSMase2	sphingomyelin phosphodiesterase 3, neutral	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-93984808-4	chr11	93984299	93985299	+	930.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-11292.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	9.0	43.0	11.5	0.0	7.0	3.5
Merged-chr8-71528438-2	chr8	71527938	71528938	+	930.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	8999.0	NM_198095	69550.0	Mm.260325	NM_198095	ENSMUSG00000046718	Bst2	2310015I10Rik|Bst-2|C87040|CD317|DAMP-1|GREG	bone marrow stromal cell antigen 2	protein-coding	38.5	48.5	37.0	0.0	5.0	9.5
Merged-chr16-95991675-2	chr16	95991175	95992175	+	930.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019537)	promoter-TSS (NM_019537)	-715.0	NM_019537	56088.0	Mm.396248	NM_019537	ENSMUSG00000022913	Psmg1	AW552102|Dscr2	proteasome (prosome, macropain) assembly chaperone 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58248976-4	chr9	58248490	58249490	+	930.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008884, intron 1 of 7)	intron (NM_008884, intron 1 of 7)	796.0	NM_008884	18854.0	Mm.392123	NM_008884	ENSMUSG00000036986	Pml	1200009E24Rik|AI661194|Trim19	promyelocytic leukemia	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163951924-4	chr2	163951407	163952407	+	930.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33224.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr3-9832924-3	chr3	9832414	9833414	+	930.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195031, intron 1 of 8)	intron (NM_001195031, intron 1 of 8)	765.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	25.5	65.5	58.5	32.0	63.0	46.0
Merged-chr13-43547054-4	chr13	43546533	43547533	+	930.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081059, intron 6 of 8)	intron (NM_001081059, intron 6 of 8)	13158.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	0.0	1.0	1.5	1.5	2.0	0.0
Merged-chr14-22020832-7	chr14	22020307	22021307	+	930.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 1 of 6)	intron (NM_028275, intron 1 of 6)	1095.0	NM_028275	76633.0	Mm.489898	NM_028275	ENSMUSG00000063458	Lrmda	1700112E06Rik|2700009F18Rik	leucine rich melanocyte differentiation associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35918801-4	chr16	35918262	35919262	+	930.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19708.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62780618-4	chr4	62780120	62781120	+	930.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106646.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84784704-4	chr12	84784194	84785194	+	930.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013589, intron 34 of 34)	intron (NM_013589, intron 34 of 34)	11424.0	NM_028863	74316.0	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-51606411-4	chr6	51605906	51606906	+	930.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61113.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131018622-5	chr1	131018084	131019084	+	930.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1261.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	11.0	56.0	17.5	6.5	25.5	5.5
Merged-chr2-30934162-4	chr2	30933655	30934655	+	930.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-18846.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-79036113-3	chr18	79035648	79036648	+	930.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053099, intron 2 of 5)	intron (NM_053099, intron 2 of 5)	73243.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163401433-4	chr2	163400924	163401924	+	930.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3431.0	NM_001205076	59091.0	Mm.34459	NM_021566	ENSMUSG00000017817	Jph2	1110002E14Rik|JP-2|Jp2	junctophilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39464014-4	chr1	39463550	39464550	+	930.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357521, intron 1 of 19)	intron (NM_001357521, intron 1 of 19)	14697.0	NM_018775	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11001103-2	chr16	11000603	11001603	+	930.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	-7795.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59455192-4	chr4	59454696	59455696	+	930.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	-16563.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114884129-4	chr11	114883620	114884620	+	930.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5921.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-12115712-4	chr2	12115232	12116232	+	930.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001309, intron 28 of 29)	intron (NM_001001309, intron 28 of 29)	-185514.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93115338-4	chr1	93114854	93115854	+	930.337524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13480.0	NM_001110315	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79721022-3	chr15	79720539	79721539	+	930.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013818, exon 12 of 12)	3' UTR (NM_013818, exon 12 of 12)	21497.0	NM_194342	223697.0	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	24.5	7.0	25.0	4.0	41.5	14.0
Merged-chr8-70607576-5	chr8	70607073	70608073	+	930.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133772, intron 1 of 16)	intron (NM_133772, intron 1 of 16)	741.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	23.5	61.5	37.0	20.0	49.5	28.0
Merged-chr15-3271475-3	chr15	3270991	3271991	+	930.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009155, intron 1 of 4)	intron (NM_009155, intron 1 of 4)	514.0	NM_009155	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-43817960-3	chr14	43817474	43818474	+	930.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007894)	TTS (NM_007894)	1665.0	NM_007894	13586.0	Mm.86948	NM_007894	ENSMUSG00000072601	Ear1	EAR-1|ECP 1|Raf1	eosinophil-associated, ribonuclease A family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64051141-3	chr7	64050600	64051600	+	930.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102735.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0.5	2.0	3.0	4.0	2.0	3.0
Merged-chr15-57883934-3	chr15	57883437	57884437	+	930.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024207, intron 1 of 7)	intron (NM_024207, intron 1 of 7)	8481.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-107707883-3	chr7	107707368	107708368	+	930.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357438, intron 3 of 20)	intron (NM_001357438, intron 3 of 20)	16025.0	NM_001357438	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55825675-3	chr19	55825200	55826200	+	930.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-69621.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	4.5	7.0	0.5	4.0	0.5	7.0
Merged-chr2-170130671-3	chr2	170130172	170131172	+	930.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159683, intron 2 of 6)	CpG	548.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122988511-3	chr10	122987989	122988989	+	930.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-2765.0	NR_029527	387251.0		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44192881-3	chr9	44192387	44193387	+	930.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 2 of 15)	L1MB4|LINE|L1	41159.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	7.0	19.5	13.5	15.5	4.0	5.5
Merged-chr7-27408909-4	chr7	27408394	27409394	+	930.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_032610, exon 14 of 36)	exon (NM_032610, exon 14 of 36)	-12341.0	NM_001199236	80297.0	Mm.459123	NM_032610	ENSMUSG00000011751	Sptbn4	1700022P15Rik|5830426A08Rik|ROSA62|SpbIV|Spnb4|dyn|lnd|nmf261|nmf379|qv	spectrin beta, non-erythrocytic 4	protein-coding	0.0	3.5	0.0	1.5	0.0	0.0
Merged-chr13-55474714-4	chr13	55474229	55475229	+	930.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177372, intron 12 of 13)	intron (NM_001177372, intron 12 of 13)	3047.0	NR_105909	102465569.0		NR_105909	ENSMUSG00000098341	Mir6944	Gm27710|mmu-mir-6944	microRNA 6944	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-113782818-4	chr9	113782319	113783319	+	930.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114347, intron 6 of 39)	L1MB8|LINE|L1	-10511.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44532898-4	chr13	44532412	44533412	+	930.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93185.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	1.5	0.0	0.0	0.0	0.0	2.0
Merged-chr14-17427068-3	chr14	17426560	17427560	+	930.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR42-int|LTR|ERVK	-233900.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110997481-5	chr11	110997077	110998077	+	930.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252209)	promoter-TSS (NM_001252209)	90.0	NM_001252209	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	52.5	104.5	105.5	62.0	102.5	86.0
Merged-chr1-152685757-2	chr1	152685257	152686257	+	930.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	-60540.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4151209-4	chr12	4150707	4151707	+	930.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 2 of 21)	intron (NM_001159537, intron 2 of 21)	17054.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101141325-4	chr15	101140818	101141818	+	930.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277255, intron 11 of 11)	(CTGGGG)n|Simple_repeat|Simple_repeat	12796.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	8.5	18.5	8.0	11.0	26.5	9.5
Merged-chr10-4093008-4	chr10	4092501	4093501	+	930.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 24 of 27)	intron (NM_001170785, intron 24 of 27)	119926.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32333857-2	chr17	32333357	32334357	+	930.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_017476, intron 9 of 13)	intron (NM_017476, intron 9 of 13)	-12619.0	NR_131218	56399.0	Mm.328945	NM_019774	ENSMUSG00000024045	Akap8	1200016A02Rik|AA673585|AKAP-8|AKAP95|AU015639	A kinase (PRKA) anchor protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81550355-4	chr10	81549832	81550832	+	930.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5286.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32447366-4	chr2	32446845	32447845	+	930.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146118, intron 1 of 10)	intron (NM_146118, intron 1 of 10)	-3112.0	NM_194335	71254.0	Mm.102341	NM_194335	ENSMUSG00000039164	Naif1	2310007O20Rik|4933440H19Rik	nuclear apoptosis inducing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-104095892-4	chr2	104095427	104096427	+	930.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001111060, exon 1 of 5)	5' UTR (NM_001111060, exon 1 of 5)	126.0	NM_001111060	12509.0	Mm.247265	NM_007652	ENSMUSG00000032679	Cd59a	AA987121|Cd59|protectin	CD59a antigen	protein-coding	0.0	9.0	3.5	2.5	9.0	5.0
Merged-chr4-53041515-2	chr4	53041015	53042015	+	930.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 43 of 49)	intron (NM_013454, intron 43 of 49)	29635.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138275125-4	chr1	138274625	138275625	+	930.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177397, intron 1 of 2)	intron (NM_177397, intron 1 of 2)	1387.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122911390-2	chr5	122910855	122911855	+	930.25	f0_balb.idr|f1_balb.idr	intron (NM_001003953, intron 12 of 22)	intron (NM_001003953, intron 12 of 22)	-11005.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	0.0	1.0	0.5	6.5	10.0	5.0
Merged-chr14-32781665-4	chr14	32781150	32782150	+	930.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4313.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46601301-7	chr4	46600652	46601652	+	930.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 1 of 11)	intron (NM_001164804, intron 1 of 11)	777.0	NM_001164804	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20740631-4	chr9	20740121	20741121	+	930.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357639, intron 1 of 5)	intron (NM_001357639, intron 1 of 5)	5675.0	NM_001357639	244723.0	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131957922-3	chr1	131957413	131958413	+	930.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5002.0	NM_001177628	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-21963210-3	chr3	21962722	21963722	+	930.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113430.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-114137756-3	chr2	114137260	114138260	+	930.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290788, intron 16 of 33)	L1M3|LINE|L1	12810.0	NR_105968	102465982.0		NR_105968	ENSMUSG00000098464	Mir7002	Gm27429|mmu-mir-7002	microRNA 7002	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-169370908-3	chr1	169370417	169371417	+	930.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	160547.0	NM_023284	66977.0	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-105502530-4	chr11	105502013	105503013	+	930.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45778.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-33859791-4	chr6	33859279	33860279	+	930.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 13 of 17)	MLT1J|LTR|ERVL-MaLR	-169669.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145754144-4	chr2	145753643	145754643	+	930.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_033220)	TTS (NR_033220)	-31973.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73470586-4	chr2	73470086	73471086	+	930.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	15167.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120159337-4	chr6	120158821	120159821	+	930.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-34502.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125410670-4	chr6	125410183	125411183	+	930.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30179.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61931343-4	chr8	61930850	61931850	+	930.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293783, intron 1 of 37)	Lx7|LINE|L1	3263.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32183286-4	chr19	32182793	32183793	+	930.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	L1MC4a|LINE|L1	27720.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30279283-3	chr7	30278822	30279822	+	930.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_144498)	promoter-TSS (NR_144498)	-772.0	NR_144498	108167416.0	Mm.471845	NR_144498		LOC108167416	-	uncharacterized LOC108167416	ncRNA	4.5	3.5	6.5	5.5	20.5	20.0
Merged-chr7-127122019-3	chr7	127121483	127122483	+	930.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133686)	promoter-TSS (NM_133686)	46.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-10456687-2	chr10	10456187	10457187	+	930.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	15627.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	21.0	71.0	64.0	9.0	78.0	54.5
Merged-chr2-104690916-4	chr2	104690418	104691418	+	930.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177190, intron 5 of 9)	MTC|LTR|ERVL-MaLR	21244.0	NM_177190	320554.0	Mm.249065	NM_177190	ENSMUSG00000027175	Tcp11l1	C130096D04Rik	t-complex 11 like 1	protein-coding	9.0	2.5	2.0	0.0	0.0	4.0
Merged-chr19-28010884-6	chr19	28010365	28011365	+	930.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166414, intron 1 of 18)	L1M4b|LINE|L1	301.0	NM_011265	19726.0	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136355162-4	chr4	136354673	136355673	+	930.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43575.0	NM_001355182	74326.0	Mm.31051	NM_028871	ENSMUSG00000066037	Hnrnpr	2610003J05Rik|2610528B01Rik|Hnrpr	heterogeneous nuclear ribonucleoprotein R	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-53433587-4	chr7	53433081	53434081	+	930.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	458308.0	NR_105746	102466619.0		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115611695-4	chr8	115611214	115612214	+	930.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95180.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46457927-4	chr11	46457425	46458425	+	930.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134250, intron 2 of 6)	RMER6B|LTR|ERVK	2994.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	11.0	30.5	18.0	13.0	26.5	7.0
Merged-chr10-127548359-2	chr10	127547859	127548859	+	930.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_008512, exon 70 of 89)	exon (NM_008512, exon 70 of 89)	-13800.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.0	1.5	8.0	0.0	2.5	4.5
Merged-chr7-121059757-3	chr7	121059280	121060280	+	930.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021554, intron 4 of 4)	intron (NM_021554, intron 4 of 4)	14750.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116124270-3	chr6	116123768	116124768	+	930.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	MT2B2|LTR|ERVL	69106.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66868127-2	chr14	66867627	66868627	+	930.125	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034881)	promoter-TSS (NM_001034881)	473.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116053532-4	chr3	116053043	116054043	+	930.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45246.0	NM_001163514	58193.0	Mm.41739	NM_021388	ENSMUSG00000027963	Extl2	3000001D04Rik|AW146439	exostoses (multiple)-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14813512-4	chr8	14813021	14814021	+	930.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 9 of 15)	intron (NM_172910, intron 9 of 15)	-75015.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	3.5	9.0	1.0	6.5	5.0	0.0
Merged-chr6-113850023-4	chr6	113849515	113850515	+	930.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009723, intron 3 of 21)	intron (NM_009723, intron 3 of 21)	41524.0	NM_001036684	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28380297-4	chr7	28379806	28380806	+	930.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1078.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-139503741-2	chr1	139503241	139504241	+	930.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_031164, intron 1 of 11)	intron (NM_031164, intron 1 of 11)	2034.0	NM_031164	14060.0	Mm.30105	NM_031164	ENSMUSG00000026368	F13b	Cf-13b|Cf13b	coagulation factor XIII, beta subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112632490-3	chr12	112631993	112632993	+	930.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 3 of 12)	intron (NM_007421, intron 3 of 12)	-12335.0	NM_001161737	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55686641-4	chr16	55686135	55687135	+	930.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	135503.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87033605-4	chr3	87033097	87034097	+	930.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34257.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	0.0	9.0	4.0	5.5	0.0	0.0
Merged-chr17-80768187-4	chr17	80767669	80768669	+	930.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40144.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0.5	0.0	0.5	0.5	0.0	0.5
Merged-chr5-110448005-4	chr5	110447477	110448477	+	930.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001142642, exon 1 of 19)	exon (NM_001142642, exon 1 of 19)	526.0	NM_001317042	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	7.0	13.0	6.0	9.0	9.5	3.5
Merged-chr2-91965048-4	chr2	91964542	91965542	+	930.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1479.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0.0	0.5	0.5	0.0	0.0	0.0
Merged-chr3-90293707-4	chr3	90293240	90294240	+	930.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	23591.0	NR_105979	102465612.0		NR_105979	ENSMUSG00000099199	Mir7012	Gm27370|mmu-mir-7012	microRNA 7012	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40460003-4	chr12	40459504	40460504	+	930.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	13951.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5787271-2	chr11	5786771	5787771	+	930.0833130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1212.0	NM_001146309	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	4.0	4.0	19.0	13.0	31.0	7.0
Merged-chr1-92774975-3	chr1	92774489	92775489	+	930.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56656.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43327484-4	chr17	43326984	43327984	+	930.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32947.0	NM_001357332	224792.0	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	23.5	29.5	37.0	15.5	26.5	30.5
Merged-chr15-79516399-4	chr15	79515981	79516981	+	930.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134090)	promoter-TSS (NM_134090)	73.0	NM_134090	105785.0	Mm.298199	NM_134090	ENSMUSG00000010830	Kdelr3	AI173274	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3	protein-coding	0.0	0.0	0.0	1.5	0.5	2.5
Merged-chr8-103970666-3	chr8	103970166	103971166	+	930.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-130959.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-16162253-5	chr4	16161745	16162745	+	930.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138102, intron 1 of 11)	intron (NR_138102, intron 1 of 11)	1398.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51137997-3	chr13	51137491	51138491	+	930.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011462, intron 1 of 3)	intron (NM_011462, intron 1 of 3)	3673.0	NM_011462	20729.0	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86822690-3	chr6	86822115	86823115	+	930.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26825.0	NR_028298	67170.0	Mm.119489	NR_028298	ENSMUSG00000100164	2610306M01Rik	-	RIKEN cDNA 2610306M01 gene	ncRNA	1.5	0.0	0.0	0.0	0.0	0.5
Merged-chr19-55709998-4	chr19	55709516	55710516	+	930.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7812.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0.0	0.0	1.0	0.0	5.0	5.5
Merged-chr13-36314453-4	chr13	36313947	36314947	+	930.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 3 of 5)	intron (NM_001039189, intron 3 of 5)	196804.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	2.0	0.0	2.0	0.0	0.0	2.5
Merged-chr10-18048427-4	chr10	18047928	18048928	+	930.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A|LTR|ERVL	-7512.0	NM_009048	19707.0	Mm.4479	NM_009048	ENSMUSG00000019854	Reps1	BB161292	RalBP1 associated Eps domain containing protein	protein-coding	5.0	2.0	12.0	4.0	24.5	13.0
Merged-chr17-70748167-4	chr17	70747639	70748639	+	930.0380859999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	98638.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	81.0	161.5	131.5	96.5	181.5	175.0
Merged-chr4-43520132-4	chr4	43519635	43520635	+	930.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277875, intron 2 of 8)	intron (NM_001277875, intron 2 of 8)	3419.0	NM_009416	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	3.0	3.0	0.0	0.0	2.5	0.0
Merged-chr17-31073978-3	chr17	31073456	31074456	+	930.022217	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	16262.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	247.5	503.0	364.5	241.0	402.5	315.0
Merged-chr3-16210761-4	chr3	16210255	16211255	+	930.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172677, intron 5 of 5)	MLT1F2|LTR|ERVL-MaLR	27590.0	NM_172677	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24617859-2	chr13	24617359	24618359	+	930.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178658, intron 1 of 13)	intron (NM_178658, intron 1 of 13)	3253.0	NM_178658	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72876568-2	chr5	72876068	72877068	+	930.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8120.0	NM_001113460	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56934648-4	chr18	56934155	56935155	+	930.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1605.0	NR_033455	100038410.0	Mm.353669	NR_033455		Gm10536	-	predicted gene 10536	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-169958419-4	chr2	169957917	169958917	+	930.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	4770.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	12.0	29.5	8.0	8.5	19.0	10.0
Merged-chr5-115493152-3	chr5	115492582	115493582	+	930.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8598.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4134608-1	chr8	4134108	4135108	+	930.0	f1_balb.idr	promoter-TSS (NM_027343)	promoter-TSS (NM_027343)	-128.0	NM_027343	70192.0	Mm.390006	NM_027343	ENSMUSG00000079168	Cd209g	2310066I10Rik|AI481039|SIGNR7	CD209g antigen	protein-coding	8.5	2.0	7.5	8.0	0.0	8.0
Merged-chr13-25854651-4	chr13	25854160	25855160	+	930.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER31A|LTR|ERV1	111656.0	NR_045062	100503530.0	Mm.86763	NR_045062	ENSMUSG00000086531	Gm11351	-	predicted gene 11351	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-97205374-6	chr13	97204906	97205906	+	930.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7049.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88407200-4	chr3	88406715	88407715	+	930.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025928, intron 1 of 4)	intron (NM_025928, intron 1 of 4)	3182.0	NM_001310605	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135312503-2	chr4	135312003	135313003	+	930.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39743.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119271133-3	chr2	119270638	119271638	+	930.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145530)	promoter-TSS (NM_145530)	88.0	NM_145530	228543.0	Mm.120274	NM_145530	ENSMUSG00000034226	Rhov	A030005A06Rik|Arhv	ras homolog family member V	protein-coding	1.0	1.5	0.0	0.0	17.0	3.5
Merged-chr5-74947874-2	chr5	74947374	74948374	+	930.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1320.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84760205-2	chr12	84759705	84760705	+	930.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 3 of 3)	intron (NM_023409, intron 3 of 3)	12907.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34316972-2	chr6	34316472	34317472	+	930.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_037965, intron 1 of 9)	intron (NR_037965, intron 1 of 9)	471.0	NR_037965	626009.0	Mm.451	NR_028277		Gm6644	Akr1b3p|EG626009	Akr1b3 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70854788-2	chr17	70854288	70855288	+	930.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1256.0	NM_001164074	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	4.5	5.0	10.5	14.0	9.0	12.5
Merged-chr10-77268658-2	chr10	77268158	77269158	+	930.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_030262, exon 9 of 9)	exon (NM_030262, exon 9 of 9)	9358.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27746829-2	chr2	27746329	27747329	+	930.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 4 of 9)	intron (NM_001290481, intron 4 of 9)	36246.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39243566-3	chr6	39243070	39244070	+	930.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36797.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95682545-4	chr10	95682040	95683040	+	930.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118394.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53138409-2	chr15	53137909	53138909	+	930.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	ID_B1|SINE|B4	207774.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-49609445-3	chr18	49608946	49609946	+	930.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86157.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127717196-4	chr7	127716668	127717668	+	930.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001301283, exon 3 of 3)	exon (NM_001301283, exon 3 of 3)	4231.0	NM_001301283	13019.0	Mm.389954	NM_007795	ENSMUSG00000042340	Ctf1	CT-1	cardiotrophin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-26251505-2	chr7	26251005	26252005	+	930.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B1|LTR|ERVK	-15326.0	NM_001167540	100312477.0	Mm.480246	NM_001167540	ENSMUSG00000046130	Vmn1r184	-	vomeronasal 1 receptor, 184	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8669934-3	chr3	8669431	8670431	+	930.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2893.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-183977483-2	chr1	183976983	183977983	+	930.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56515.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31192663-2	chr14	31192163	31193163	+	930.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347583, intron 3 of 13)	intron (NM_001347583, intron 3 of 13)	14163.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11549648-2	chr2	11549148	11550148	+	930.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	ID_B1|SINE|B4	4281.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86671408-1	chr17	86670908	86671908	+	930.0	f0_balb.idr	Intergenic	Intergenic	-82456.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20861396-4	chr14	20860898	20861898	+	930.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D-int|LTR|ERVL-MaLR	24736.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120579506-2	chr11	120579006	120580006	+	930.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133796, intron 5 of 5)	intron (NM_133796, intron 5 of 5)	2114.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118244057-5	chr11	118243565	118244565	+	930.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	4527.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38650728-4	chr6	38650218	38651218	+	930.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12351.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92905777-2	chr1	92905277	92906277	+	930.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1212.0	NM_175118	67446.0	Mm.46179	NM_175118	ENSMUSG00000047067	Dusp28	0710001B24Rik|AV005521	dual specificity phosphatase 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-174675864-4	chr2	174675362	174676362	+	929.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099328, intron 3 of 4)	intron (NM_001099328, intron 3 of 4)	32328.0	NM_001099328	100043757.0	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	-	zinc finger protein 831	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82840567-4	chr18	82840098	82841098	+	929.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15299.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58797464-4	chr15	58796971	58797971	+	929.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175212, intron 1 of 6)	intron (NM_175212, intron 1 of 6)	25956.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66871705-4	chr14	66871123	66872123	+	929.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001034881)	TTS (NM_001034881)	2773.0	NM_001034881	432870.0	Mm.425890	NM_001034881	ENSMUSG00000075553	Gm5464	EG432870	predicted gene 5464	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-137954321-4	chr3	137953813	137954813	+	929.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 3 of 8)	intron (NM_011932, intron 3 of 8)	27236.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135282900-4	chr4	135282389	135283389	+	929.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10129.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153338918-3	chr2	153338418	153339418	+	929.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6892.0	NR_040318	72326.0	Mm.400102	NR_040318	ENSMUSG00000073236	2500004C02Rik	-	RIKEN cDNA 2500004C02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81058895-3	chr7	81058396	81059396	+	929.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054085, intron 1 of 13)	intron (NM_054085, intron 1 of 13)	1296.0	NM_054085	116904.0	Mm.475768	NM_054085	ENSMUSG00000038763	Alpk3	AW319487|D330016D04|MAK|Midori|mKIAA1330	alpha-kinase 3	protein-coding	0.5	0.0	1.5	0.0	4.5	5.0
Merged-chr7-24270409-4	chr7	24269894	24270894	+	929.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009567)	promoter-TSS (NM_009567)	-24.0	NM_009567	22755.0	Mm.383535	NM_009567	ENSMUSG00000055305	Zfp93	Znf235	zinc finger protein 93	protein-coding	0.0	0.0	3.0	0.0	4.0	0.5
Merged-chr11-80185369-4	chr11	80184947	80185947	+	929.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028019, intron 1 of 4)	L1MB7|LINE|L1	1575.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	82.0	109.5	67.0	73.5	157.5	96.5
Merged-chr19-21785272-4	chr19	21784772	21785772	+	929.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031997, intron 2 of 24)	intron (NM_031997, intron 2 of 24)	6932.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123750452-4	chr8	123749936	123750936	+	929.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16478.0	NR_040702	234863.0	Mm.246601	NR_040702	ENSMUSG00000110599	6030466F02Rik	-	RIKEN cDNA 6030466F02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-3258860-4	chr9	3258360	3259360	+	929.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-59047.0	NR_027988	114673.0	Mm.422774	NM_053265	ENSMUSG00000042360	4930433N12Rik	-	RIKEN cDNA 4930433N12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-148987819-4	chr3	148987333	148988333	+	929.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-33198.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.0	0.0	1.5	2.0	1.5	3.0
Merged-chr15-59705820-4	chr15	59705342	59706342	+	929.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57188.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56264224-4	chr17	56263737	56264737	+	929.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010192)	TTS (NM_010192)	7444.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63606462-2	chr14	63605962	63606962	+	929.916626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173393)	promoter-TSS (NM_173393)	-68.0	NM_173393	219149.0	Mm.32071	NM_173393	ENSMUSG00000035067	Xkr6	2700008G24Rik|BC024502|Xrg6	X-linked Kx blood group related 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79891632-4	chr15	79891142	79892142	+	929.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160415)	promoter-TSS (NM_001160415)	-766.0	NM_001160415	80287.0	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Gm20117|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	29.5	103.0	65.0	48.5	94.0	39.5
Merged-chr15-98517524-4	chr15	98517001	98518001	+	929.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001289437)	TTS (NM_001289437)	2333.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-61984480-4	chr15	61983988	61984988	+	929.8916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010849)	promoter-TSS (NM_010849)	-853.0	NM_001177354	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126569578-3	chr8	126569097	126570097	+	929.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23839.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115262084-4	chr5	115261603	115262603	+	929.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302449, intron 1 of 16)	intron (NM_001302449, intron 1 of 16)	10792.0	NM_001302448	50849.0	Mm.30051	NM_016698	ENSMUSG00000041740	Rnf10	AA675014|RIE2|mKIAA0262	ring finger protein 10	protein-coding	6.0	11.0	17.0	6.0	11.0	17.0
Merged-chr12-5206583-2	chr12	5206083	5207083	+	929.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164493, intron 3 of 13)	intron (NM_001164493, intron 3 of 13)	169099.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64315779-4	chr13	64315314	64316314	+	929.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3104.0	NM_025370	66129.0	Mm.491110	NM_025370	ENSMUSG00000021482	Aaed1	1110018J18Rik|AI849003	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding	4.5	3.5	4.5	0.0	9.5	2.5
Merged-chr1-182281458-3	chr1	182281041	182282041	+	929.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007853, intron 1 of 2)	intron (NM_007853, intron 1 of 2)	654.0	NM_001360783	13244.0	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-150233595-6	chr5	150233080	150234080	+	929.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26350.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3795255-7	chr4	3794717	3795717	+	929.857117	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	40438.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0.0	0.0	1.0	5.5	0.0	0.5
Merged-chr14-118591761-4	chr14	118591307	118592307	+	929.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_105815)	TTS (NR_105815)	665.0	NR_105815	102465208.0		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	5.5	1.5	1.0	3.0	3.5	8.0
Merged-chr2-116980005-4	chr2	116979442	116980442	+	929.841675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79790.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152741314-2	chr2	152740806	152741806	+	929.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTG)n|Simple_repeat|Simple_repeat	5055.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	9.5	31.0	36.5	11.5	16.5	20.0
Merged-chr16-76200442-4	chr16	76199946	76200946	+	929.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77833.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138912464-3	chr1	138911957	138912957	+	929.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35507.0	NR_138576	75546.0	Mm.71176	NR_138576	ENSMUSG00000099808	1700019P21Rik	-	RIKEN cDNA 1700019P21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117042703-4	chr4	117042208	117043208	+	929.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111277, intron 3 of 11)	intron (NM_001111277, intron 3 of 11)	23306.0	NM_001111277	108067.0	Mm.34612	NM_175135	ENSMUSG00000028683	Eif2b3	1190002P15Rik	eukaryotic translation initiation factor 2B, subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91539927-2	chr1	91539434	91540434	+	929.8333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039126)	promoter-TSS (NM_001039126)	-631.0	NM_001039126	65247.0	Mm.234152	NM_023046	ENSMUSG00000026311	Asb1	1700029O08Rik|1700054C17Rik|AI426616|AI851378|mKIAA1146	ankyrin repeat and SOCS box-containing 1	protein-coding	1.5	0.0	3.5	1.5	2.0	5.0
Merged-chr18-50054644-4	chr18	50054177	50055177	+	929.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134131, intron 1 of 1)	intron (NM_134131, intron 1 of 1)	-1015.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	57.0	95.0	76.0	41.0	79.5	56.0
Merged-chr11-61498916-3	chr11	61498436	61499436	+	929.822205	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-4670.0	NM_001291034	23939.0	Mm.38172	NM_011841	ENSMUSG00000001034	Mapk7	BMK-1|BMK1|ERK-5|ERK5|Erk5-T|PRKM7|b2b2346Clo	mitogen-activated protein kinase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-63140005-4	chr13	63139509	63140509	+	929.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 5 of 15)	intron (NM_001289926, intron 5 of 15)	-100020.0	NR_110520	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	8.5	5.5	5.0	21.0	28.5	14.5
Merged-chr2-131264172-2	chr2	131263672	131264672	+	929.8000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NR_149748, intron 1 of 8)	intron (NR_149748, intron 1 of 8)	1333.0	NR_149748	74450.0	Mm.101264	NM_153501	ENSMUSG00000037514	Pank2	4933409I19Rik|AI642621	pantothenate kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5542883-4	chr11	5542371	5543371	+	929.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134033)	promoter-TSS (NM_134033)	-654.0	NM_134033	104479.0	Mm.210403	NM_134033	ENSMUSG00000020482	Ccdc117	1110004K02Rik|1700026O03Rik|AU018638|AU042822|AV173073|BC018601	coiled-coil domain containing 117	protein-coding	7.5	50.0	16.0	16.0	30.5	15.0
Merged-chr2-49349898-4	chr2	49349379	49350379	+	929.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-101607.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34262983-4	chr18	34262471	34263471	+	929.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360980, intron 2 of 16)	intron (NM_001360980, intron 2 of 16)	15277.0	NM_001360979	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	1.5	1.0	0.0	0.0	4.0	2.5
Merged-chr11-46373272-4	chr11	46372776	46373776	+	929.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281966, intron 1 of 16)	Lx8b|LINE|L1	16239.0	NM_001281968	16428.0	Mm.339927	NM_010583	ENSMUSG00000020395	Itk	Emt|Tcsk|Tsk	IL2 inducible T cell kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37814690-3	chr19	37814196	37815196	+	929.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116888.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	6.5	4.5	6.5	6.5	5.0	5.0
Merged-chr12-72694102-3	chr12	72693607	72694607	+	929.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29279.0	NM_025522	66375.0	Mm.289653	NM_025522	ENSMUSG00000021094	Dhrs7	2310016E22Rik|5730564L20Rik|AW061210|Retdsr4|Retsdr4	dehydrogenase/reductase (SDR family) member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-29979387-3	chr13	29978932	29979932	+	929.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010093, intron 1 of 6)	intron (NM_010093, intron 1 of 6)	4959.0	NM_001289920	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27647936-3	chr15	27647442	27648442	+	929.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTTG)n|Simple_repeat|Simple_repeat	-17249.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135400487-4	chr5	135399967	135400967	+	929.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5921.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111386714-4	chr12	111386198	111387198	+	929.758301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8980.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31437150-3	chr17	31436633	31437633	+	929.755554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008804, intron 4 of 18)	intron (NM_008804, intron 4 of 18)	50899.0	NM_001163748	18585.0	Mm.10812	NM_008804	ENSMUSG00000041119	Pde9a	PDE9A1	phosphodiesterase 9A	protein-coding	0.0	1.5	0.0	0.0	1.5	0.0
Merged-chr15-99702502-4	chr15	99702015	99703015	+	929.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031842, intron 1 of 12)	intron (NM_031842, intron 1 of 12)	228.0	NM_031842	83797.0	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	0.0	1.0	1.5	2.0	3.0	3.5
Merged-chr2-159843478-4	chr2	159842967	159843967	+	929.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103874.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	13.5	15.5	20.5	1.0	7.0	3.0
Merged-chr12-86884134-4	chr12	86883650	86884650	+	929.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145836, exon 1 of 1)	5' UTR (NM_145836, exon 1 of 1)	664.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43604692-4	chr7	43604170	43605170	+	929.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	-2499.0	NM_001355131	74400.0	Mm.159188	NM_028913	ENSMUSG00000055102	Zfp819	4930427I11Rik|4933405K07Rik	zinc finger protein 819	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25540374-2	chr9	25539874	25540874	+	929.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	58777.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59339845-4	chr2	59339228	59340228	+	929.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 15 of 20)	intron (NM_175464, intron 15 of 20)	46954.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8934070-4	chr10	8933561	8934561	+	929.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47991.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.0	0.0	0.0	0.5	3.0	0.0
Merged-chr17-56288988-2	chr17	56288488	56289488	+	929.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_025836, intron 1 of 7)	B3A|SINE|B2	1523.0	NM_025836	66905.0	Mm.311696	NM_025836	ENSMUSG00000024197	Plin3	1300012C15Rik|M6prbp1|Tip47	perilipin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-13589591-4	chr13	13589094	13590094	+	929.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010748)	promoter-TSS (NM_010748)	-815.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173018165-3	chr2	173017737	173018737	+	929.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3665.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	0.0	2.0	2.0	0.0	1.0	2.0
Merged-chr6-48537571-3	chr6	48537067	48538067	+	929.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347164)	promoter-TSS (NM_001347164)	-2.0	NM_001347164	76252.0	Mm.30214	NM_133764	ENSMUSG00000039347	Atp6v0e2	0610006O14Rik|NM9.2	ATPase, H+ transporting, lysosomal V0 subunit E2	protein-coding	7.0	9.5	2.0	41.5	76.0	40.0
Merged-chr4-14922195-4	chr4	14921696	14922696	+	929.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7712.0	NM_001356579	100038514.0	Mm.331495	NM_001243100		Gm11837	-	predicted gene 11837	protein-coding	0.0	2.5	0.5	0.0	0.5	0.0
Merged-chr2-167776270-6	chr2	167775762	167776762	+	929.711121	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85085.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45663729-4	chr14	45663200	45664200	+	929.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5557.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	53.5	237.0	118.0	29.0	68.0	36.5
Merged-chr14-67933269-4	chr14	67932751	67933751	+	929.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177780, intron 1 of 51)	CpG	321.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78323135-4	chr11	78322705	78323705	+	929.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009657)	promoter-TSS (NM_009657)	132.0	NM_001303423	11676.0	Mm.7729	NM_009657	ENSMUSG00000017390	Aldoc	AI847350|AU040929|Aldo3|Scrg2	aldolase C, fructose-bisphosphate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64533622-4	chr1	64533128	64534128	+	929.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037726, intron 1 of 6)	CpG	824.0	NM_001037726	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-121073195-6	chr7	121072695	121073695	+	929.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030691, intron 1 of 5)	B4|SINE|B4	1335.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62071490-4	chr15	62071017	62072017	+	929.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	32260.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-186722108-4	chr1	186721577	186722577	+	929.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026041, intron 4 of 4)	intron (NM_026041, intron 4 of 4)	-16088.0	NM_001329107	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84176859-4	chr12	84176352	84177352	+	929.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	17163.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-183294812-4	chr1	183294296	183295296	+	929.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151660, exon 2 of 13)	non-coding (NR_151660, exon 2 of 13)	-2264.0	NM_181732	108909.0	Mm.290502	NM_145626	ENSMUSG00000042901	Aida	2610208M17Rik|BC004835	axin interactor, dorsalization associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39455552-3	chr10	39455077	39456077	+	929.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122893, intron 3 of 13)	intron (NM_001122893, intron 3 of 13)	85778.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30821342-2	chr16	30820842	30821842	+	929.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	221619.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-30494468-3	chr17	30493966	30494966	+	929.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172618, intron 6 of 11)	intron (NM_172618, intron 6 of 11)	81821.0	NM_172618	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102371125-3	chr12	102370572	102371572	+	929.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 6 of 9)	intron (NM_177620, intron 6 of 9)	68741.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	4.0	5.5	7.5	2.0	3.5	9.0
Merged-chr5-135904013-2	chr5	135903513	135904513	+	929.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16094.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80073267-2	chr10	80072767	80073767	+	929.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359635, intron 4 of 31)	intron (NM_001359635, intron 4 of 31)	2172.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94572653-4	chr16	94572146	94573146	+	929.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	1739.0	NM_001113389	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-44351556-4	chr17	44351055	44352055	+	929.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	162983.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-162739487-4	chr1	162738987	162739987	+	929.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081290, intron 1 of 34)	intron (NM_001081290, intron 1 of 34)	1069.0	NM_001081290	226562.0	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	34.0	103.5	53.0	14.5	56.0	58.0
Merged-chr5-29258542-4	chr5	29258056	29259056	+	929.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020295, intron 11 of 16)	intron (NM_020295, intron 11 of 16)	62563.0	NR_110371	56874.0	Mm.87352	NM_021470	ENSMUSG00000029130	Rnf32	1700009J01Rik|2700025B22Rik|4930542N22Rik|Lmbr2	ring finger protein 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27606382-3	chr7	27605854	27606854	+	929.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331109)	promoter-TSS (NM_001331109)	557.0	NM_007434	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	6.0	60.5	29.0	5.5	12.5	1.5
Merged-chr13-37218147-3	chr13	37217676	37218676	+	929.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127169.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	11.0	48.5	25.0	7.0	41.0	12.0
Merged-chr2-22790532-4	chr2	22789995	22790995	+	929.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	16168.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35301983-7	chr17	35301469	35302469	+	929.585693	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18578.0	NM_010390	15006.0	Mm.466882	NM_010390	ENSMUSG00000079507	H2-Q1	H-2Q1|Q1|Q1b|Q1d|Q1k|Qa-1|Qa1|Qed-1	histocompatibility 2, Q region locus 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-65154495-4	chr12	65153998	65154998	+	929.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172578, intron 5 of 13)	L2a|LINE|L2	18082.0	NM_172578	217653.0	Mm.21144	NM_172578	ENSMUSG00000047534	Mis18bp1	6720403H11|C79407|Knl2|mKIAA1903	MIS18 binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78139856-4	chr10	78139341	78140341	+	929.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29927.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181537837-4	chr2	181537338	181538338	+	929.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271584, intron 2 of 5)	intron (NM_001271584, intron 2 of 5)	17353.0	NM_001271584	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79840855-3	chr10	79840360	79841360	+	929.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	ZP3AR|Satellite|Satellite	-13572.0	NM_001077363	19205.0	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32881880-4	chr2	32881318	32882318	+	929.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146119, intron 1 of 13)	intron (NM_146119, intron 1 of 13)	5684.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25445291-4	chr8	25444819	25445819	+	929.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-73440.0	NM_001079909	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64016697-4	chr9	64016199	64017199	+	929.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 1 of 3)	intron (NM_008542, intron 1 of 3)	5360.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-43412948-4	chr11	43412454	43413454	+	929.5750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13027.0	NM_013917	30939.0	Mm.6856	NM_013917	ENSMUSG00000020415	Pttg1	AW555095|C87862|Pttg|Pttg3	pituitary tumor-transforming gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146059601-4	chr3	146059122	146060122	+	929.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172864, intron 16 of 22)	Tigger7|DNA|TcMar-Tigger	48414.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80152770-5	chr10	80152215	80153215	+	929.5599980000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347117, intron 4 of 7)	intron (NM_001347117, intron 4 of 7)	3033.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-157427119-3	chr1	157426626	157427626	+	929.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14531.0	NM_177644	226525.0	Mm.235028	NM_177644	ENSMUSG00000070565	Rasal2	6530401P13|A330066M24Rik	RAS protein activator like 2	protein-coding	2.5	1.0	0.5	0.0	2.0	3.5
Merged-chr7-145029274-4	chr7	145028752	145029752	+	929.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89327.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	18.5	13.0	10.5	7.0	17.0	6.0
Merged-chr3-108904079-4	chr3	108903556	108904556	+	929.537476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001356292, exon 7 of 7)	exon (NM_001356292, exon 7 of 7)	7673.0	NM_025845	66921.0	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	9.0	23.0	14.0	2.5	16.5	21.0
Merged-chr5-33203785-4	chr5	33203278	33204278	+	929.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14460.0	NM_133903	100689.0	Mm.34694	NM_133903	ENSMUSG00000037379	Spon2	2310045I24Rik|AI504350|M-spondin|Mindin|Mspondin	spondin 2, extracellular matrix protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-137395241-4	chr6	137394752	137395752	+	929.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 10 of 26)	intron (NM_011216, intron 10 of 26)	-15469.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24884064-2	chr17	24883565	24884565	+	929.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011956, intron 5 of 6)	intron (NM_011956, intron 5 of 6)	2285.0	NM_001355396	26426.0	Mm.36718	NM_011956	ENSMUSG00000039183	Nubp2	D17Wsu11e	nucleotide binding protein 2	protein-coding	0.0	0.5	3.5	0.0	7.5	3.0
Merged-chr15-98476608-3	chr15	98476026	98477026	+	929.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6157.0	NM_010679	16770.0	Mm.5074	NM_010679	ENSMUSG00000022991	Lalba	AW208827|Lyzg	lactalbumin, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99393254-4	chr10	99392764	99393764	+	929.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	130033.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-77111487-2	chr14	77110987	77111987	+	929.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001310648, exon 7 of 7)	exon (NM_001310648, exon 7 of 7)	-45276.0	NM_001253759	239188.0	Mm.441158	NM_172813	ENSMUSG00000022012	Enox1	B230207J08|D230005D02Rik	ecto-NOX disulfide-thiol exchanger 1	protein-coding	8.5	3.0	1.0	0.0	0.0	8.5
Merged-chr2-91962085-2	chr2	91961585	91962585	+	929.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138306, intron 1 of 30)	intron (NM_138306, intron 1 of 30)	1478.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47184874-2	chr19	47184374	47185374	+	929.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021360, intron 1 of 5)	L1MB5|LINE|L1	6054.0	NM_021360	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr16-20808374-2	chr16	20807874	20808874	+	929.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-73863.0	NM_009379	21832.0	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45585042-3	chr19	45584540	45585540	+	929.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013907, intron 6 of 8)	intron (NM_013907, intron 6 of 8)	24455.0	NM_172639	226162.0	Mm.21978	NM_172639	ENSMUSG00000041035	Dpcd	Ndac	deleted in primary ciliary dyskinesia	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-121077536-2	chr7	121077036	121078036	+	929.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_021554)	TTS (NM_021554)	-3006.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52966426-4	chr2	52965900	52966900	+	929.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	108532.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36071048-2	chr16	36070548	36071548	+	929.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159421)	promoter-TSS (NM_001159421)	467.0	NM_027342	70186.0	Mm.212991	NM_027342	ENSMUSG00000003955	Fam162a	2310056P07Rik|HGTD-P	family with sequence similarity 162, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5508566-2	chr6	5508066	5509066	+	929.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12288.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54002901-2	chr11	54002401	54003401	+	929.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019687, intron 3 of 9)	intron (NM_019687, intron 3 of 9)	-22568.0	NM_019723	56517.0	Mm.154284	NM_019723	ENSMUSG00000063652	Slc22a21	Octn3|Slc22a9	solute carrier family 22 (organic cation transporter), member 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-41287719-2	chr2	41287219	41288219	+	929.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053011, intron 27 of 90)	intron (NM_053011, intron 27 of 90)	1159849.0	NR_105754	102465171.0		NR_105754	ENSMUSG00000098660	Mir6336	Gm27584|mmu-mir-6336	microRNA 6336	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67253094-2	chr18	67252594	67253594	+	929.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M8|LINE|L1	-7264.0	NM_001357518	225651.0	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	Pgap5	metallophosphoesterase 1	protein-coding	6.5	4.5	6.5	2.0	0.5	4.5
Merged-chr15-34083809-2	chr15	34083310	34084310	+	929.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357925, intron 1 of 10)	intron (NM_001357925, intron 1 of 10)	1091.0	NM_001357925	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	54.5	68.0	91.0	37.5	107.0	63.5
Merged-chr12-21370090-2	chr12	21369590	21370590	+	929.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291871, intron 1 of 18)	intron (NM_001291871, intron 1 of 18)	3542.0	NR_102380	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	250.0	444.5	338.5	161.5	388.5	249.0
Merged-chr11-83636777-2	chr11	83636277	83637277	+	929.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12601.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120936519-4	chr9	120936020	120937020	+	929.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007614, intron 1 of 14)	intron (NM_007614, intron 1 of 14)	2942.0	NM_001165902	12387.0	Mm.291928	NM_007614	ENSMUSG00000006932	Ctnnb1	Bfc|Catnb|Mesc	catenin (cadherin associated protein), beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46297391-2	chr17	46296891	46297891	+	929.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286028)	promoter-TSS (NM_001286028)	-92.0	NM_001286028	106565.0	Mm.23633	NM_134120	ENSMUSG00000047428	Dlk2	AI413481|DLK-2|Egfl9	delta like non-canonical Notch ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93375280-6	chr10	93374795	93375795	+	929.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39084.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	5.0	5.5	9.5	64.0	80.5	31.0
Merged-chr8-90881040-4	chr8	90880531	90881531	+	929.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	-51218.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	13.5	9.5	15.5	13.0	18.5	8.5
Merged-chr7-45340813-4	chr7	45340307	45341307	+	929.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029741, intron 27 of 29)	intron (NM_029741, intron 27 of 29)	5538.0	NM_010473	15464.0	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126533524-4	chr4	126532943	126533943	+	929.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153177)	promoter-TSS (NM_153177)	15.0	NM_153177	76850.0	Mm.86705	NM_153177	ENSMUSG00000042500	Ago4	5730550L01Rik|AI481660|Eif2c4	argonaute RISC catalytic subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123893727-4	chr5	123893232	123894232	+	929.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C-int|LTR|ERVK	-13543.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	0.0	4.0	0.5	10.5	10.5	5.5
Merged-chr14-54902343-4	chr14	54901850	54902850	+	929.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	8207.0	NM_019402	54196.0	Mm.7723	NM_019402	ENSMUSG00000022194	Pabpn1	PAB2|Pabp3|mPABII	poly(A) binding protein, nuclear 1	protein-coding	27.0	72.0	68.5	9.5	63.5	37.0
Merged-chr6-94159443-4	chr6	94158923	94159923	+	929.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130996, intron 1 of 1)	intron (NR_130996, intron 1 of 1)	78019.0	NR_130996	78178.0	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44272890-3	chr13	44272389	44273389	+	929.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BLACKJACK|DNA|hAT-Blackjack	-56402.0	NR_045088	100503592.0	Mm.184925	NR_045088	ENSMUSG00000113186	A330076C08Rik	-	RIKEN cDNA A330076C08 gene	ncRNA	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7333617-3	chr10	7333130	7334130	+	929.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121393.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	0.0	6.5	1.0	1.5	6.5	0.0
Merged-chr13-37356203-4	chr13	37355701	37356701	+	929.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	10856.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	59.0	101.0	71.5	62.0	100.0	78.0
Merged-chr13-74807186-3	chr13	74806679	74807679	+	929.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301153, intron 1 of 31)	intron (NM_001301153, intron 1 of 31)	781.0	NM_009817	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	2.5	0.0	1.0	0.0	0.0	0.0
Merged-chr1-174052354-4	chr1	174051839	174052839	+	929.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1964.0	NM_146716	258711.0	Mm.377648	NM_146716	ENSMUSG00000047048	Olfr432	MOR123-2	olfactory receptor 432	protein-coding	13.5	43.0	34.5	33.5	47.5	38.5
Merged-chr15-67048925-3	chr15	67048520	67049520	+	929.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79379.0	NM_008681	17988.0	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	22.0	3.0	1.0	0.0	0.0	3.5
Merged-chr6-4904217-3	chr6	4903713	4904713	+	929.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 1 of 15)	intron (NM_181595, intron 1 of 15)	893.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102074437-3	chr15	102073932	102074932	+	929.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145625, intron 1 of 14)	CpG	659.0	NM_145625	75705.0	Mm.290022	NM_145625	ENSMUSG00000058655	Eif4b	2310046H11Rik|AL024095|C85189|Eif4a2	eukaryotic translation initiation factor 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67473355-4	chr17	67472850	67473850	+	929.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118859.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-116629174-4	chr8	116628662	116629662	+	929.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 1 of 6)	intron (NM_029441, intron 1 of 6)	103829.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112722639-2	chr12	112722139	112723139	+	929.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024602, intron 1 of 18)	CpG	465.0	NM_001024602	217882.0	Mm.23689	NM_001024602	ENSMUSG00000072825	Cep170b	AI466840|AW555464|Kiaa0284|mKIAA0284	centrosomal protein 170B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118163863-4	chr11	118163372	118164372	+	929.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001112699)	TTS (NM_001112699)	-34653.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-44233185-9	chr4	44232685	44233685	+	929.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11918.0	NR_039565	100628618.0		NR_039565	ENSMUSG00000092677	Mir5106	mir-5106|mmu-mir-5106|mu-mir-5106	microRNA 5106	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25054751-3	chr12	25054229	25055229	+	929.388855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081378, intron 31 of 31)	intron (NM_001081378, intron 31 of 31)	41363.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	18.0	30.0	11.5	1.0	1.0	2.5
Merged-chr17-47368837-4	chr17	47368329	47369329	+	929.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146212)	promoter-TSS (NM_001146212)	-58.0	NM_001146212	64657.0	Mm.216250	NM_183086	ENSMUSG00000034729	Mrps10	1110038B19Rik|AW743084|Rpms10	mitochondrial ribosomal protein S10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-26764948-4	chr6	26764446	26765446	+	929.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	833520.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152686094-4	chr1	152685615	152686615	+	929.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	-60898.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55812946-4	chr4	55812396	55813396	+	929.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-280421.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-57800427-4	chr18	57799945	57800945	+	929.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-8112.0	NR_152225	100503033.0	Mm.381112	NR_152224		Gm19519	-	predicted gene, 19519	ncRNA	2.0	16.0	10.0	1.0	16.0	4.5
Merged-chr4-133108062-4	chr4	133107569	133108569	+	929.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22564.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	10.0	22.0	30.0	48.0	30.5	62.5
Merged-chr11-115153955-5	chr11	115153306	115154306	+	929.342834	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021411)	promoter-TSS (NM_021411)	-372.0	NM_021411	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-75270396-2	chr9	75269896	75270896	+	929.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081322, intron 16 of 40)	ORR1D2|LTR|ERVL-MaLR	-35892.0	NM_010313	14697.0	Mm.17604	NM_010313	ENSMUSG00000032192	Gnb5	GBS|Gbeta5|flr	guanine nucleotide binding protein (G protein), beta 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13292547-4	chr8	13292019	13293019	+	929.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172282, intron 2 of 12)	intron (NM_172282, intron 2 of 12)	-4393.0	NM_001042650	102323.0	Mm.368890	NM_001024504	ENSMUSG00000038506	Dcun1d2	AW495713|mFLJ10704	DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20697167-4	chr14	20696661	20697661	+	929.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028428, intron 2 of 2)	intron (NM_028428, intron 2 of 2)	2193.0	NM_028428	73068.0	Mm.277552	NM_028428	ENSMUSG00000039357	Fut11	3110009G03Rik|AI317183	fucosyltransferase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-109985619-4	chr9	109985129	109986129	+	929.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205332, intron 2 of 17)	intron (NM_001205332, intron 2 of 17)	53855.0	NM_008633	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.0	0.0	2.0	0.0	2.0	3.0
Merged-chr16-90293311-2	chr16	90292811	90293811	+	929.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-8808.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8779065-2	chr10	8778565	8779565	+	929.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	B3A|SINE|B2	107005.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67246693-4	chr17	67246270	67247270	+	929.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	107689.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	26.0	54.5	49.0	14.5	12.5	11.5
Merged-chr18-46523696-2	chr18	46523196	46524196	+	929.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_173423, intron 2 of 2)	intron (NM_173423, intron 2 of 2)	2275.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50870924-4	chr15	50870429	50871429	+	929.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032000, intron 1 of 5)	intron (NM_032000, intron 1 of 5)	18120.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	36.5	66.5	62.0	36.5	110.0	82.5
Merged-chr14-77850798-3	chr14	77850292	77851292	+	929.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025384, intron 3 of 5)	intron (NM_025384, intron 3 of 5)	24125.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	196.5	537.0	319.0	165.5	337.5	259.0
Merged-chr15-12197002-4	chr15	12196512	12197512	+	929.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8016.0	NM_001356498	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130254458-4	chr5	130253963	130254963	+	929.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023248, intron 1 of 4)	intron (NM_023248, intron 1 of 4)	1067.0	NM_023248	66711.0	Mm.280484	NM_023248	ENSMUSG00000025337	Sbds	4733401P19Rik|AI836084|CGI-97|SDS	SBDS ribosome maturation factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115995691-3	chr6	115995192	115996192	+	929.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026376)	promoter-TSS (NM_026376)	-687.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-83433064-4	chr4	83432569	83433569	+	929.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029949, intron 3 of 8)	intron (NM_029949, intron 3 of 8)	15345.0	NM_029949	77634.0	Mm.271985	NM_029949	ENSMUSG00000028483	Snapc3	1810020H02Rik|4930558A07Rik|5031401C21Rik|AI414457|E030018J20Rik	small nuclear RNA activating complex, polypeptide 3	protein-coding	0.0	9.5	15.5	7.5	12.5	9.5
Merged-chr7-80184486-6	chr7	80183997	80184997	+	929.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-2344.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	13.0	35.5	17.5	17.5	39.0	8.0
Merged-chr10-128902619-3	chr10	128902131	128903131	+	929.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6288.0	NM_001042580	12512.0	Mm.371552	NM_007653	ENSMUSG00000025351	Cd63	C75951|ME491|Tspan30	CD63 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113691230-4	chr6	113690721	113691721	+	929.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 11 of 11)	intron (NM_001113553, intron 11 of 11)	-5829.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12760413-4	chr18	12759924	12760924	+	929.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252490, intron 10 of 13)	intron (NM_001252490, intron 10 of 13)	19069.0	NM_027687	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-145115907-2	chr5	145115407	145116407	+	929.2999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_023142, intron 1 of 9)	BC1_Mm|scRNA|scRNA	1651.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-133314712-4	chr3	133314198	133315198	+	929.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293641, intron 1 of 11)	intron (NM_001293641, intron 1 of 11)	4588.0	NM_001293641	74776.0	Mm.210305	NM_146141	ENSMUSG00000028013	Ppa2	1110013G13Rik|Sid6306	pyrophosphatase (inorganic) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40776606-4	chr4	40776114	40777114	+	929.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-18729.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77468002-4	chr11	77467506	77468506	+	929.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139130, intron 5 of 9)	CpG	4093.0	NM_139130	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3161399-3	chr11	3160865	3161865	+	929.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 9 of 32)	intron (NM_030207, intron 9 of 32)	32098.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-15815388-3	chr19	15814889	15815889	+	929.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109233.0	NM_001205339	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-156216312-4	chr4	156215799	156216799	+	929.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172417, intron 1 of 3)	intron (NM_172417, intron 1 of 3)	372.0	NM_172417	74183.0	Mm.431343	NM_172417	ENSMUSG00000078486	Perm1	2310042D19Rik	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding	10.5	14.5	13.0	10.5	15.0	11.0
Merged-chr11-77464115-2	chr11	77463615	77464615	+	929.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_139129, intron 1 of 8)	intron (NM_139129, intron 1 of 8)	202.0	NM_139130	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106780791-2	chr11	106780291	106781291	+	929.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007840, exon 13 of 13)	3' UTR (NM_007840, exon 13 of 13)	-1254.0	NM_015810	50776.0	Mm.859	NM_015810	ENSMUSG00000020718	Polg2	mtPolB|p55|polG-beta	polymerase (DNA directed), gamma 2, accessory subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106030547-4	chr1	106030053	106031053	+	929.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001122676, exon 13 of 14)	exon (NM_001122676, exon 13 of 14)	40147.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30728884-2	chr7	30728384	30729384	+	929.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001290631)	TTS (NM_001290631)	650.0	NM_027215	69804.0	Mm.27499	NM_027215	ENSMUSG00000006315	Tmem147	2010004E11Rik|5033425B17Rik|Nifie14	transmembrane protein 147	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12037434-4	chr15	12036919	12037919	+	929.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41412.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71542215-3	chr8	71541709	71542709	+	929.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028617)	promoter-TSS (NM_028617)	-721.0	NM_028617	73711.0	Mm.307770	NM_028617	ENSMUSG00000031813	Mvb12a	1110012M11Rik|Fam125a	multivesicular body subunit 12A	protein-coding	42.0	54.5	65.0	52.5	93.0	81.0
Merged-chr1-44162597-3	chr1	44162099	44163099	+	929.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011729, intron 6 of 14)	intron (NM_011729, intron 6 of 14)	14855.0	NM_011729	22592.0	Mm.2213	NM_011729	ENSMUSG00000026048	Ercc5	Xpg	excision repair cross-complementing rodent repair deficiency, complementation group 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20735601-3	chr18	20735093	20736093	+	929.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	10811.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83010202-4	chr6	83009700	83010700	+	929.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 7 of 9)	RMER6B|LTR|ERVK	23271.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-102895051-4	chr13	102894541	102895541	+	929.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	134786.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-116897017-4	chr2	116896513	116897513	+	929.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3139.0	NR_040336	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-105581325-4	chr7	105580823	105581823	+	929.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001253886, exon 1 of 14)	5' UTR (NM_001253886, exon 1 of 14)	168.0	NM_001253885	11785.0	Mm.38469	NM_009685	ENSMUSG00000037032	Apbb1	Fe65|Rir	amyloid beta (A4) precursor protein-binding, family B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36678525-4	chr18	36677987	36678987	+	929.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083317)	promoter-TSS (NM_001083317)	-728.0	NM_001360989	67843.0	Mm.273350	NM_026404	ENSMUSG00000033272	Slc35a4	2610030J16Rik	solute carrier family 35, member A4	protein-coding	11.5	41.0	39.5	5.0	58.0	20.5
Merged-chr5-130089931-6	chr5	130089455	130090455	+	929.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130476, intron 1 of 5)	intron (NM_001130476, intron 1 of 5)	10585.0	NM_001130476	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	4.5	3.5	7.0	0.0	6.5	5.5
Merged-chr2-52930383-6	chr2	52929941	52930941	+	929.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	72573.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125149421-3	chr6	125148927	125149927	+	929.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039669, intron 1 of 9)	intron (NM_001039669, intron 1 of 9)	4203.0	NM_001302779	320678.0	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	7.0	23.5	8.0	4.5	32.5	13.0
Merged-chr5-120887665-2	chr5	120887165	120888165	+	929.1666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011852)	promoter-TSS (NM_011852)	-52.0	NR_126529	23960.0	Mm.389688	NM_011852	ENSMUSG00000066861	Oas1g	AI449562|L2|Mmu-L|Mmu-L2|Oas1b|Oias-1|Oias1	2'-5' oligoadenylate synthetase 1G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25475001-4	chr14	25474512	25475512	+	929.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	15827.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-140058200-2	chr7	140057700	140058700	+	929.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9112.0	NM_001347609	17703.0	Mm.4816	NM_010836	ENSMUSG00000025469	Msx3	AI323377	msh homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115164051-6	chr11	115163525	115164525	+	929.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012030, intron 1 of 5)	CpG	684.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	103.0	114.0	88.0	35.5	99.5	94.5
Merged-chr5-90661620-4	chr5	90661119	90662119	+	929.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21092.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	7.5	5.5	2.5	0.0	5.5	3.5
Merged-chr10-25116221-3	chr10	25115712	25116712	+	929.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83958.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129472171-4	chr6	129471596	129472596	+	929.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020008, intron 1 of 5)	intron (NM_020008, intron 1 of 5)	683.0	NM_001309637	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	98.5	218.0	158.0	44.5	121.0	76.5
Merged-chr8-3515935-2	chr8	3515435	3516435	+	929.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359123)	promoter-TSS (NM_001359123)	551.0	NM_015801	50767.0	Mm.23085	NM_015801	ENSMUSG00000004565	Pnpla6	AI661849|MSws|Nte	patatin-like phospholipase domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64036577-2	chr1	64036077	64037077	+	929.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_033563, intron 3 of 3)	intron (NM_033563, intron 3 of 3)	5924.0	NR_105864	102466760.0		NR_105864	ENSMUSG00000098487	Mir6899	Gm27384|mmu-mir-6899	microRNA 6899	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9494895-2	chr13	9494395	9495395	+	929.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 2 of 36)	intron (NM_001081426, intron 2 of 36)	218370.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103920375-4	chr14	103919884	103920884	+	929.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75908.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63714855-3	chr9	63714331	63715331	+	929.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	L1MB7|LINE|L1	43163.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94344735-3	chr10	94344186	94345186	+	929.1222529999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	32737.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	8.5	11.0	17.5	4.5	5.5	0.0
Merged-chr2-34782134-3	chr2	34781656	34782656	+	929.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145522, intron 6 of 7)	B1_Mur2|SINE|Alu	10066.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4654659-6	chr7	4654148	4655148	+	929.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172894, intron 1 of 23)	intron (NM_172894, intron 1 of 23)	4302.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61757281-4	chr14	61756787	61757787	+	929.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74914.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	9.0	7.5	8.5	4.5	16.5	10.5
Merged-chr15-73089725-4	chr15	73089242	73090242	+	929.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053068)	promoter-TSS (NM_053068)	-670.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34511206-4	chr1	34510705	34511705	+	929.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12793.0	NM_001360855	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32303858-3	chr4	32303361	32304361	+	929.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113574.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.0	0.0	2.0	0.0	0.0	0.5
Merged-chr15-99835298-4	chr15	99834764	99835764	+	929.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113545, intron 2 of 10)	intron (NM_001113545, intron 2 of 10)	-15115.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73422661-4	chr7	73422171	73423171	+	929.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46897.0	NR_040324	319783.0	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36903760-3	chr17	36903259	36904259	+	929.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146077, intron 3 of 7)	ID_B1|SINE|B4	5629.0	NM_146077	224762.0	Mm.213417	NM_146077	ENSMUSG00000058063	Trim31	BC026666|HCG1|HCGI|RNF	tripartite motif-containing 31	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr6-24160001-3	chr6	24159501	24160501	+	929.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019481, intron 1 of 14)	intron (NM_019481, intron 1 of 14)	8091.0	NM_019481	55961.0	Mm.19299	NM_019481	ENSMUSG00000029700	Slc13a1	AI314066|AI987826|NaSi-1|Nas1	solute carrier family 13 (sodium/sulfate symporters), member 1	protein-coding	0.5	2.0	0.5	2.5	2.5	2.5
Merged-chr19-21053807-3	chr19	21053312	21054312	+	929.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50898.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45229535-4	chr9	45228997	45229997	+	929.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 1 of 4)	intron (NM_001198971, intron 1 of 4)	-25422.0	NM_145403	214523.0	Mm.436756	NM_145403	ENSMUSG00000032091	Tmprss4	mCAP2	transmembrane protease, serine 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8838446-4	chr17	8837939	8838939	+	929.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011866, intron 1 of 21)	intron (NM_011866, intron 1 of 21)	-11546.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75222086-4	chr10	75221595	75222595	+	929.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001145826, exon 2 of 19)	5' UTR (NM_001145826, exon 2 of 19)	9705.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54713088-4	chr14	54712632	54713632	+	929.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207131)	promoter-TSS (NM_207131)	-958.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	20.5	25.5	22.0	1.5	9.5	13.0
Merged-chr12-102458108-1	chr12	102457608	102458608	+	929.0	f1_c57bl6.idr	Intergenic	Intergenic	-11026.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	11.0	4.5	9.0	11.0	7.0	6.5
Merged-chr17-4997424-2	chr17	4996924	4997924	+	929.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 1 of 19)	intron (NM_001085355, intron 1 of 19)	2350.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124737758-2	chr6	124737258	124738258	+	929.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077705, intron 1 of 15)	intron (NM_001077705, intron 1 of 15)	951.0	NM_001077705	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-51973338-2	chr19	51972838	51973838	+	929.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-290959.0	NM_008386	16333.0	Mm.46269	NM_008386	ENSMUSG00000035804	Ins1	Ins-1|Ins2-rs1	insulin I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109471124-2	chr11	109470624	109471624	+	929.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029842, intron 1 of 5)	B1F|SINE|Alu	2105.0	NM_134038	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-36899833-1	chr19	36899333	36900333	+	929.0	f0_c57.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	19766.0	NM_028263	72514.0	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	0.0	0.0	0.0	0.0	4.5	1.0
Merged-chr12-102740480-2	chr12	102739980	102740980	+	929.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001142939, exon 2 of 2)	3' UTR (NM_001142939, exon 2 of 2)	3181.0	NM_001142937	64113.0	Mm.291222	NM_022323	ENSMUSG00000096458	Moap1	AA987038|Map-1|Pnma4	modulator of apoptosis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-35955998-3	chr13	35955499	35956499	+	929.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11907.0	NM_029628	76487.0	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	27.5	50.0	22.5	89.0	88.0	63.5
Merged-chr11-64435222-4	chr11	64434725	64435725	+	929.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178870)	promoter-TSS (NM_178870)	-107.0	NM_178870	15478.0	Mm.340214	NM_178870	ENSMUSG00000047759	Hs3st3a1	3Ost3a|Hs3st3a	heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1	protein-coding	0.0	13.5	11.0	0.0	0.0	0.0
Merged-chr10-42244721-4	chr10	42244218	42245218	+	929.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	32024.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115071126-3	chr11	115070631	115071631	+	929.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-9092.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-33934831-3	chr13	33934334	33935334	+	929.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243192, intron 2 of 7)	intron (NM_001243192, intron 2 of 7)	-1198.0	NR_040707	68808.0	Mm.443347	NR_040707	ENSMUSG00000085457	1110046J04Rik	-	RIKEN cDNA 1110046J04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27697309-3	chr2	27696809	27697809	+	929.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-11983.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34523454-2	chr19	34522954	34523954	+	929.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_021460, exon 3 of 10)	exon (NM_021460, exon 3 of 10)	4020.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57431502-3	chr9	57431030	57432030	+	929.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152145, intron 3 of 6)	intron (NR_152145, intron 3 of 6)	8206.0	NM_001357913	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140758824-2	chr5	140758324	140759324	+	929.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34697.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59615919-2	chr10	59615419	59616419	+	929.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033259, intron 1 of 7)	intron (NM_001033259, intron 1 of 7)	773.0	NM_001033259	215999.0	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46485412-2	chr19	46484912	46485912	+	929.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 11 of 11)	intron (NM_001025391, intron 11 of 11)	-16236.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-41438668-4	chr12	41438163	41439163	+	929.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	47394.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121409807-3	chr10	121409305	121410305	+	929.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_138956)	TTS (NM_138956)	44715.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0.0	5.0	2.5	0.0	0.5	0.0
Merged-chr7-107592917-2	chr7	107592417	107593417	+	929.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2134.0	NM_008905	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43040228-3	chr17	43039731	43040731	+	929.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 3 of 5)	intron (NM_178589, intron 3 of 5)	23676.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	16.0	38.5	30.0	15.0	24.0	39.0
Merged-chr14-76165108-2	chr14	76164608	76165608	+	929.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54217.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-83330607-2	chr10	83330107	83331107	+	929.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177388, intron 1 of 10)	(TG)n|Simple_repeat|Simple_repeat	7210.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128687723-2	chr8	128687223	128688223	+	929.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010578, intron 1 of 15)	intron (NM_010578, intron 1 of 15)	2069.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8844818-2	chr10	8844318	8845318	+	929.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	41252.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	7.5	24.5	16.0	2.0	16.0	15.5
Merged-chr6-7733286-4	chr6	7732787	7733787	+	929.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-40105.0	NM_012055	27053.0	Mm.2942	NM_012055	ENSMUSG00000029752	Asns	-	asparagine synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91456057-4	chr2	91455562	91456562	+	929.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1469.0	NM_172668	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	2.5	0.5	0.0	0.5	2.0	0.0
Merged-chr2-118659138-2	chr2	118658638	118659638	+	929.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4439.0	NM_001033254	214230.0	Mm.241857	NM_001033254	ENSMUSG00000074923	Pak6	4732456M09	p21 (RAC1) activated kinase 6	protein-coding	2.0	1.0	2.5	2.0	0.5	1.0
Merged-chr5-43865969-4	chr5	43865450	43866450	+	929.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2859.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	197.0	415.5	278.5	204.0	442.5	284.5
Merged-chr11-75075579-3	chr11	75075067	75076067	+	929.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 13 of 18)	intron (NM_001002764, intron 13 of 18)	-9576.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21617293-2	chr9	21616793	21617793	+	929.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357764, intron 1 of 34)	MIRb|SINE|MIR	1124.0	NM_001174078	20586.0	Mm.286593	NM_011417	ENSMUSG00000032187	Smarca4	BAF190A|Brg1|HP1-BP72|SNF2beta|SW1/SNF|b2b508.1Clo|b2b692Clo	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126083990-3	chr4	126083443	126084443	+	929.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172701, intron 6 of 9)	ID_B1|SINE|B4	-12710.0	NM_001163266	116748.0	Mm.41865	NM_138721	ENSMUSG00000050188	Lsm10	-	U7 snRNP-specific Sm-like protein LSM10	protein-coding	9.5	7.0	7.0	1.0	6.5	7.0
Merged-chr5-122114438-3	chr5	122113948	122114948	+	929.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183307, intron 9 of 12)	intron (NM_183307, intron 9 of 12)	13497.0	NM_010861	17906.0	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	4.0	5.0	0.0	0.0	0.0	0.0
Merged-chr11-50379206-2	chr11	50378706	50379706	+	929.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347487, intron 2 of 12)	B1_Mus1|SINE|Alu	1487.0	NM_001347487	59013.0	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126227216-4	chr4	126226692	126227692	+	929.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24482.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	9.0	21.0	11.0	1.0	7.0	9.5
Merged-chr5-114567895-4	chr5	114567405	114568405	+	928.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004180)	promoter-TSS (NM_001004180)	-346.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	4.0	0.5	5.0	3.0	2.5	2.5
Merged-chr12-40583943-4	chr12	40583444	40584444	+	928.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	ORR1D2|LTR|ERVL-MaLR	137891.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145212184-4	chr6	145211690	145212690	+	928.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163628, intron 1 of 2)	intron (NM_001163628, intron 1 of 2)	1043.0	NM_001362057	67636.0	Mm.486359	NM_133688	ENSMUSG00000040370	Etfrf1	4930469P12Rik|AL022899|Ghiso|Lyrm5	electron transfer flavoprotein regulatory factor 1	protein-coding	27.0	44.0	45.0	28.5	40.5	37.0
Merged-chr9-103336696-4	chr9	103336178	103337178	+	928.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176979, intron 19 of 27)	Tigger1|DNA|TcMar-Tigger	28301.0	NM_001134427	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	2.5	51.5	7.5	9.0	17.0	4.5
Merged-chr6-90736828-4	chr6	90736322	90737322	+	928.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356440, intron 1 of 13)	CpG	-20293.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-42945368-4	chr9	42944916	42945916	+	928.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1045.0	NM_175481	110637.0	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40069498-3	chr10	40068964	40069964	+	928.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 3 of 5)	intron (NM_001114332, intron 3 of 5)	-44196.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-92457466-3	chr9	92456955	92457955	+	928.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178711)	promoter-TSS (NM_178711)	77.0	NM_178711	235527.0	Mm.55289	NM_178711	ENSMUSG00000032377	Plscr4	AV245873	phospholipid scramblase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87531916-6	chr17	87531496	87532496	+	928.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85061.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	18.5	41.0	27.0	2.5	20.0	14.0
Merged-chr13-98693020-7	chr13	98692433	98693433	+	928.9285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025606, intron 1 of 3)	intron (NM_001025606, intron 1 of 3)	1898.0	NM_001025606	380863.0	Mm.28264	NM_001025606	ENSMUSG00000052485	Tmem171	Gm905	transmembrane protein 171	protein-coding	11.0	12.5	10.5	16.0	27.0	15.0
Merged-chr11-69803915-4	chr11	69803375	69804375	+	928.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027913, exon 1 of 1)	non-coding (NR_027913, exon 1 of 1)	206.0	NR_027913	74341.0	Mm.280165	NR_027913		G630025P09Rik	4632403M07Rik	RIKEN cDNA G630025P09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-94144852-4	chr2	94144358	94145358	+	928.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019657, intron 1 of 10)	intron (NM_019657, intron 1 of 10)	13051.0	NM_019657	56348.0	Mm.22505	NM_019657	ENSMUSG00000027195	Hsd17b12	2610510O05Rik|AI172963|KIK-I|Kik1	hydroxysteroid (17-beta) dehydrogenase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-137293319-3	chr3	137292806	137293806	+	928.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47772.0	NM_001163522	59308.0	Mm.27343	NM_016885	ENSMUSG00000054690	Emcn	0610012K22Rik|AI315669|Muc14	endomucin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83535908-3	chr11	83535481	83536481	+	928.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5463.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-93922718-3	chr13	93922209	93923209	+	928.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009712, intron 6 of 7)	intron (NM_009712, intron 6 of 7)	131932.0	NR_049198	100885837.0		NR_049198	ENSMUSG00000093480	Mir5624	Gm25075|mir-5624|mmu-mir-5624	microRNA 5624	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136084495-4	chr5	136083998	136084998	+	928.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039103, intron 1 of 19)	intron (NM_001039103, intron 1 of 19)	582.0	NM_001039103	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-8114344-4	chr14	8113850	8114850	+	928.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	16139.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-61595759-4	chr3	61595262	61596262	+	928.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	231255.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58301221-4	chr11	58300682	58301682	+	928.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5887.0	NM_182996	103836.0	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	2.5	53.0	10.0	24.0	90.5	56.0
Merged-chr14-75131657-4	chr14	75131146	75132146	+	928.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027581)	promoter-TSS (NM_027581)	523.0	NM_001247984	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93256904-4	chr10	93256408	93257408	+	928.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282967, intron 2 of 3)	intron (NM_001282967, intron 2 of 3)	54251.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	18.5	27.5	18.0	31.5	78.0	55.5
Merged-chr13-111494473-4	chr13	111493955	111494955	+	928.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-4328.0	NM_001361924	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59616664-4	chr2	59616162	59617162	+	928.8624880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198294, intron 1 of 26)	intron (NM_198294, intron 1 of 26)	4620.0	NM_198294	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117066886-3	chr11	117066394	117067394	+	928.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9889.0	NR_027059	76972.0	Mm.309167	NR_027059	ENSMUSG00000086859	Snhg20	2810008D09Rik	small nucleolar RNA host gene 20	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73462928-4	chr2	73462456	73463456	+	928.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-9067.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53033845-2	chr4	53033345	53034345	+	928.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013454, exon 50 of 50)	3' UTR (NM_013454, exon 50 of 50)	21965.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8743058-4	chr10	8742561	8743561	+	928.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 12 of 19)	intron (NM_175155, intron 12 of 19)	143009.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	18.5	15.0	7.0	1.0	8.5	8.0
Merged-chr2-90542266-4	chr2	90541729	90542729	+	928.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	38418.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	32.5	126.0	57.0	32.0	66.5	45.5
Merged-chr2-117264005-2	chr2	117263505	117264505	+	928.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_026620, intron 6 of 7)	intron (NM_026620, intron 6 of 7)	14266.0	NM_026620	68215.0	Mm.219389	NM_026620	ENSMUSG00000027349	Fam98b	2610510H03Rik	family with sequence similarity 98, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111774001-3	chr10	111773499	111774499	+	928.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	100377.0	NR_046029	629206.0	Mm.391444	NR_046029	ENSMUSG00000112533	Gm20758	-	predicted gene, 20758	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-17816358-3	chr5	17815857	17816857	+	928.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159557, intron 5 of 15)	intron (NM_001159557, intron 5 of 15)	19539.0	NM_001159555	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35061113-2	chr2	35060613	35061613	+	928.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_010406, intron 1 of 40)	intron (NM_010406, intron 1 of 40)	328.0	NM_010406	15139.0	Mm.2168	NM_010406	ENSMUSG00000026874	Hc	C5|C5a|He|Hfib2	hemolytic complement	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103359293-4	chr11	103358810	103359810	+	928.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_183288)	TTS (NM_183288)	4382.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0.0	0.0	0.0	9.5	6.0	2.5
Merged-chr10-20839104-4	chr10	20838604	20839604	+	928.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113443.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92368269-8	chr5	92367736	92368736	+	928.8035890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	MTD|LTR|ERVL-MaLR	-4940.0	NR_038116	56066.0	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-28003982-4	chr5	28003465	28004465	+	928.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-67447.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	4.0	25.0	17.0	6.0	29.5	20.0
Merged-chr12-3264578-4	chr12	3264070	3265070	+	928.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 2 of 5)	intron (NM_016676, intron 2 of 5)	28779.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57347906-4	chr16	57347398	57348398	+	928.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025599, intron 1 of 9)	intron (NM_025599, intron 1 of 9)	-5379.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96770166-4	chr3	96769653	96770653	+	928.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026406, intron 3 of 8)	CT-rich|Low_complexity|Low_complexity	42542.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-185205244-4	chr1	185204744	185205744	+	928.787476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163754, intron 1 of 34)	intron (NM_001163754, intron 1 of 34)	1076.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	0.0	13.0	3.0	1.5	21.5	7.0
Merged-chr14-118674863-4	chr14	118674384	118675384	+	928.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163676, intron 1 of 29)	intron (NM_001163676, intron 1 of 29)	2047.0	NM_001163675	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63382021-4	chr14	63381525	63382525	+	928.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007549, intron 6 of 12)	intron (NM_007549, intron 6 of 12)	35162.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85843334-6	chr11	85842871	85843871	+	928.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10756.0	NM_009324	21385.0	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105500443-3	chr5	105499955	105500955	+	928.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19016.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.0	0.0	1.5	0.0	0.0	1.5
Merged-chr18-49552965-4	chr18	49552469	49553469	+	928.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29680.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57761506-4	chr10	57761006	57762006	+	928.758301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23417.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-38719170-4	chr9	38718665	38719665	+	928.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145957, intron 1 of 18)	intron (NM_001145957, intron 1 of 18)	897.0	NM_172767	67776.0	Mm.290950	NM_172767	ENSMUSG00000023186	Vwa5a	5830475I06Rik|AW552491|BCSC-1|E130119J22|Loh11cr2a	von Willebrand factor A domain containing 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-32683384-3	chr14	32682915	32683915	+	928.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195097, intron 1 of 3)	intron (NM_001195097, intron 1 of 3)	1857.0	NM_001195097	100504518.0	Mm.318319	NM_001195097	ENSMUSG00000071540	3425401B19Rik	Cefip	RIKEN cDNA 3425401B19 gene	protein-coding	0.0	3.0	1.0	0.5	1.5	0.0
Merged-chr10-80376986-2	chr10	80376486	80377486	+	928.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-7349.0	NR_038088	100568459.0		NR_038088	ENSMUSG00000115783	Bc1	Gm24367	brain cytoplasmic RNA 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-49485401-4	chr9	49484897	49485897	+	928.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172770, intron 1 of 21)	intron (NM_172770, intron 1 of 21)	828.0	NM_172770	235330.0	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding	0.0	0.0	0.5	14.0	35.0	18.0
Merged-chr17-26487375-4	chr17	26486859	26487859	+	928.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	21113.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	3.5	3.5	8.5	7.0	11.5	5.0
Merged-chr9-70651135-3	chr9	70650621	70651621	+	928.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172772, intron 1 of 8)	RMER5|LTR|ERV1	6053.0	NM_172772	235461.0	Mm.170855	NM_172772	ENSMUSG00000042444	Mindy2	AI465301|B230380D07Rik|Fam63b|mKIAA1164	MINDY lysine 48 deubiquitinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-89774455-3	chr16	89774025	89775025	+	928.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43827.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-101503753-3	chr14	101503267	101504267	+	928.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 3 of 18)	intron (NM_001081278, intron 3 of 18)	105424.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108795290-4	chr12	108794753	108795753	+	928.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009537, intron 1 of 4)	intron (NM_009537, intron 1 of 4)	1942.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-100675120-4	chr6	100674501	100675501	+	928.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-3844.0	NM_181590	72171.0	Mm.256022	NM_181590	ENSMUSG00000035378	Shq1	2810403P18Rik|Grim-1	SHQ1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117712309-4	chr11	117711819	117712819	+	928.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 3 of 21)	intron (NM_198022, intron 3 of 21)	58030.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-115097161-4	chr13	115096643	115097643	+	928.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033228, intron 1 of 28)	intron (NM_001033228, intron 1 of 28)	4821.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100317939-2	chr11	100317439	100318439	+	928.6999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2010.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-65242579-3	chr13	65242121	65243121	+	928.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-36233.0	NM_178364	170936.0	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding	2.0	5.0	5.5	0.0	2.5	1.5
Merged-chr10-20046325-4	chr10	20045832	20046832	+	928.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 7 of 29)	intron (NM_008580, intron 7 of 29)	-102588.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0.0	2.5	0.0	0.0	0.0	0.0
Merged-chr15-67099017-3	chr15	67098527	67099527	+	928.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77855.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	1.0	0.0	0.0	0.0	0.0	1.0
Merged-chr1-167517894-4	chr1	167517468	167518468	+	928.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51188.0	NM_001013382	240899.0	Mm.159799	NM_001013382	ENSMUSG00000040485	Lrrc52	4930413P14Rik	leucine rich repeat containing 52	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22780485-4	chr11	22780056	22781056	+	928.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	79179.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66124246-4	chr9	66123759	66124759	+	928.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019727, intron 1 of 14)	intron (NM_019727, intron 1 of 14)	627.0	NM_019727	56440.0	Mm.271891	NM_019727	ENSMUSG00000032382	Snx1	-	sorting nexin 1	protein-coding	1.5	14.5	3.0	0.0	8.0	12.0
Merged-chr3-149349484-4	chr3	149348944	149349944	+	928.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74707.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.0	3.5	2.5	0.0	0.0	2.0
Merged-chr4-16161585-2	chr4	16161085	16162085	+	928.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_138102, intron 1 of 11)	intron (NR_138102, intron 1 of 11)	2058.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119206744-2	chr11	119206244	119207244	+	928.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347625, intron 3 of 11)	intron (NM_001347625, intron 3 of 11)	21755.0	NM_001347625	207592.0	Mm.205263	NM_172443	ENSMUSG00000039976	Tbc1d16	B930087K01|BC026530|Tcd1d16	TBC1 domain family, member 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19306018-2	chr7	19305518	19306518	+	928.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347586, intron 3 of 4)	intron (NM_001347586, intron 3 of 4)	4027.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-70881120-4	chr6	70880633	70881633	+	928.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010121, intron 4 of 16)	intron (NM_010121, intron 4 of 16)	36618.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110769417-3	chr7	110768909	110769909	+	928.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276301, intron 1 of 14)	intron (NM_001276301, intron 1 of 14)	1203.0	NM_001276301	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120140417-4	chr10	120139920	120140920	+	928.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27455.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	0.5	3.0	8.5	3.0	6.0	0.5
Merged-chr13-69534109-4	chr13	69533603	69534603	+	928.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001169131)	promoter-TSS (NM_001169131)	-239.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	0.0	24.0	5.0	3.0	25.5	10.5
Merged-chr2-103578995-4	chr2	103578498	103579498	+	928.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	L2b|LINE|L2	12688.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67229076-4	chr7	67228571	67229571	+	928.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175215)	TTS (NM_175215)	6455.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-39735381-4	chr15	39734880	39735880	+	928.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10550.0	NM_001289506	75766.0	Mm.159563	NM_029422	ENSMUSG00000022303	Dcstamp	4833414I07Rik|DC-STAMP|FIND|Tm7sf4|mDC-STAMP	dendrocyte expressed seven transmembrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75151050-4	chr8	75150549	75151549	+	928.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41540.0	NM_008566	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	11.0	35.5	11.5	13.0	35.5	12.0
Merged-chr2-32961057-2	chr2	32960557	32961557	+	928.625	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009076)	promoter-TSS (NM_009076)	198.0	NM_199302	227738.0	Mm.248037	NM_199302	ENSMUSG00000026792	Lrsam1	-	leucine rich repeat and sterile alpha motif containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143044170-4	chr5	143043700	143044700	+	928.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	68820.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19124943-4	chr10	19124442	19125442	+	928.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16807.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	3.5	2.0	5.0	7.5	24.5	9.5
Merged-chr1-161071532-4	chr1	161071099	161072099	+	928.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172644)	promoter-TSS (NM_172644)	832.0	NR_131029	70454.0	Mm.248212	NM_027429	ENSMUSG00000026708	Cenpl	2610300B10Rik|AW121806|AW550697|CENP-L	centromere protein L	protein-coding	22.5	59.0	38.0	27.0	78.0	33.5
Merged-chr15-91179452-4	chr15	91178974	91179974	+	928.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011994, intron 3 of 9)	intron (NM_011994, intron 3 of 9)	12533.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-30578254-4	chr12	30577761	30578761	+	928.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6182.0	NM_172049	211986.0	Mm.34035	NM_172049	ENSMUSG00000043061	Tmem18	BC024093	transmembrane protein 18	protein-coding	3.0	0.0	4.0	0.0	0.0	5.0
Merged-chr12-25339844-4	chr12	25339339	25340339	+	928.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	210665.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	27.0	46.0	50.0	23.0	63.0	51.0
Merged-chr10-116572143-4	chr10	116571629	116572629	+	928.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359563, intron 1 of 13)	intron (NM_001359563, intron 1 of 13)	8407.0	NM_001359250	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-81981727-4	chr3	81981217	81982217	+	928.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5989.0	NM_019911	56720.0	Mm.258622	NM_019911	ENSMUSG00000028011	Tdo2	AA407491|TDO|TO|chky	tryptophan 2,3-dioxygenase	protein-coding	4.0	4.0	0.0	2.0	8.5	3.5
Merged-chr1-191163653-3	chr1	191163143	191164143	+	928.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001109759, exon 1 of 1)	exon (NM_001109759, exon 1 of 1)	1174.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-26533998-9	chr14	26533426	26534426	+	928.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001347494, exon 1 of 20)	5' UTR (NM_001347494, exon 1 of 20)	698.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-89753743-3	chr1	89753242	89754242	+	928.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 11 of 16)	intron (NM_001037136, intron 11 of 16)	-69850.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28866055-4	chr7	28865510	28866510	+	928.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008496, intron 3 of 3)	intron (NM_008496, intron 3 of 3)	1624.0	NM_008496	16858.0	Mm.20973	NM_008496	ENSMUSG00000053522	Lgals7	Galectin-7|Pig1	lectin, galactose binding, soluble 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9418805-4	chr13	9418298	9419298	+	928.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	142273.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127618593-7	chr10	127618071	127619071	+	928.535706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 1 of 88)	intron (NM_008512, intron 1 of 88)	2577.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	29.0	64.5	62.5	59.5	85.0	53.5
Merged-chr9-105129985-3	chr9	105129481	105130481	+	928.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029385, exon 3 of 3)	3' UTR (NM_029385, exon 3 of 3)	1824.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	19.0	29.0	14.0	57.0	117.0	83.5
Merged-chr18-54963296-6	chr18	54962800	54963800	+	928.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	26880.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86187987-4	chr17	86187481	86188481	+	928.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 1 of 14)	ORR1C2|LTR|ERVL-MaLR	20196.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-75962911-2	chr16	75962411	75963411	+	928.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-37873.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90210247-2	chr7	90209747	90210747	+	928.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_146194)	TTS (NM_146194)	55185.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-40166561-2	chr15	40166061	40167061	+	928.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_155349, intron 2 of 2)	intron (NR_155349, intron 2 of 2)	3954.0	NR_155349	102636151.0	Mm.321976	NR_155349	ENSMUSG00000115367	Gm33301	-	predicted gene, 33301	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165855272-2	chr1	165854772	165855772	+	928.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113391, intron 2 of 7)	intron (NM_001113391, intron 2 of 7)	66591.0	NM_001113392	12503.0	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54146254-3	chr11	54145759	54146759	+	928.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45335.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134184008-4	chr5	134183505	134184505	+	928.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053266)	promoter-TSS (NM_053266)	-33.0	NM_001359852	114674.0	Mm.218744	NM_053266	ENSMUSG00000015942	Gtf2ird2	1700012P16Rik	GTF2I repeat domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5571371-2	chr17	5570871	5571871	+	928.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	78771.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-11264827-2	chr12	11264327	11265327	+	928.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177331, intron 1 of 13)	intron (NM_177331, intron 1 of 13)	960.0	NM_177331	209334.0	Mm.215295	NM_177331	ENSMUSG00000051235	Gen1	5830483C08Rik	GEN1, Holliday junction 5' flap endonuclease	protein-coding	0.0	0.5	3.0	0.0	0.0	0.0
Merged-chr18-12171882-2	chr18	12171382	12172382	+	928.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029623, intron 3 of 19)	B1_Mus1|SINE|Alu	3152.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32705128-2	chr2	32704628	32705628	+	928.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_130860)	TTS (NM_130860)	7656.0	NM_130860	107951.0	Mm.27557	NM_130860	ENSMUSG00000009555	Cdk9	PITALRE	cyclin-dependent kinase 9 (CDC2-related kinase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67358598-2	chr17	67358098	67359098	+	928.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4107.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80944709-2	chr17	80944209	80945209	+	928.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026516)	promoter-TSS (NM_026516)	77.0	NM_026516	68027.0	Mm.357108	NM_026516	ENSMUSG00000024245	Tmem178	2810417M05Rik|Tmem178a	transmembrane protein 178	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83618574-7	chr11	83618095	83619095	+	928.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 5 of 8)	intron (NR_036453, intron 5 of 8)	-25508.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-93650424-2	chr17	93649924	93650924	+	928.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	451256.0	NM_009625	11516.0	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87386360-2	chr6	87385860	87386860	+	928.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026860, intron 3 of 5)	URR1A|DNA|hAT-Charlie	2575.0	NM_026860	68888.0	Mm.46387	NM_026860	ENSMUSG00000030048	Gkn3	1190003M12Rik	gastrokine 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97424137-2	chr11	97423637	97424637	+	928.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26023.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0.0	0.0	0.5	0.0	0.0	3.5
Merged-chr6-84584502-2	chr6	84584002	84585002	+	928.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177713, intron 2 of 6)	CpG-12217	9308.0	NM_175475	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111941629-2	chr13	111941129	111942129	+	928.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	73693.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77844207-2	chr18	77843707	77844707	+	928.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 2 of 14)	intron (NM_013831, intron 2 of 14)	-47817.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	0.0	0.0	0.0	3.5	0.0	0.0
Merged-chr11-54029207-4	chr11	54028688	54029688	+	928.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1084.0	NM_001330304	30805.0	Mm.274590	NM_019687	ENSMUSG00000020334	Slc22a4	Octn1	solute carrier family 22 (organic cation transporter), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90432866-5	chr3	90432333	90433333	+	928.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145540, exon 1 of 30)	exon (NM_145540, exon 1 of 30)	803.0	NM_145540	229543.0	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	19.0	37.5	35.5	22.5	51.0	40.0
Merged-chr15-75695887-4	chr15	75695391	75696391	+	928.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8397.0	NM_001163465	14787.0	Mm.57052	NM_008164	ENSMUSG00000022580	Rhpn1	BB023497|Grbp|Rhophilin|mKIAA1929	rhophilin, Rho GTPase binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-13332786-4	chr1	13332288	13333288	+	928.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	L1M4|LINE|L1	39641.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88732570-4	chr15	88732080	88733080	+	928.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033274, intron 1 of 12)	intron (NM_001033274, intron 1 of 12)	1639.0	NM_001033274	223770.0	Mm.254438	NM_001033274	ENSMUSG00000022387	Brd1	1110059H06Rik|AI316859|mKIAA4191	bromodomain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77627712-4	chr10	77627215	77628215	+	928.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019803, intron 1 of 5)	intron (NM_019803, intron 1 of 5)	5394.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50299232-4	chr16	50298717	50299717	+	928.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 3 of 16)	intron (NM_027444, intron 3 of 16)	133172.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96303323-4	chr11	96302806	96303806	+	928.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008268)	promoter-TSS (NM_008268)	-206.0	NM_008268	15413.0	Mm.207	NM_008268	ENSMUSG00000038700	Hoxb5	AI385717|Hox-2.1	homeobox B5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61243570-4	chr9	61243071	61244071	+	928.4249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1ME|LINE|L1	50238.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47703862-4	chr9	47703353	47704353	+	928.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	114355.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	49.0	111.0	52.0	39.0	129.5	72.0
Merged-chr17-65737836-4	chr17	65737321	65738321	+	928.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	34931.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	7.0	2.0	2.5	10.5	22.0	14.0
Merged-chr15-25285628-4	chr15	25285117	25286117	+	928.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	128147.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-37998689-4	chr18	37998207	37999207	+	928.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001205336, exon 1 of 33)	5' UTR (NM_001205336, exon 1 of 33)	262.0	NM_001205336	106952.0	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	6.5	18.0	20.0	10.0	21.5	19.5
Merged-chr17-6963160-4	chr17	6962663	6963663	+	928.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2007.0	NM_147155	380608.0	Mm.371734	NM_147155	ENSMUSG00000052031	Tagap1	2610315E15Rik|AA415005|FKSG15	T cell activation GTPase activating protein 1	protein-coding	17.0	56.0	26.5	14.0	48.5	19.5
Merged-chr8-125531844-4	chr8	125531339	125532339	+	928.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	ORR1E|LTR|ERVL-MaLR	38024.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	2.5	3.5	3.5	2.5	2.0	4.0
Merged-chr10-63460539-4	chr10	63460041	63461041	+	928.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164376, intron 1 of 17)	intron (NM_001164376, intron 1 of 17)	3030.0	NM_001164376	216033.0	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150882787-4	chr4	150882289	150883289	+	928.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	27132.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-15933107-4	chr9	15932621	15933621	+	928.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 21 of 24)	intron (NM_001080814, intron 21 of 24)	-58565.0	NM_145712	244701.0	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-108445472-4	chr11	108444954	108445954	+	928.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029606, intron 5 of 27)	intron (NM_029606, intron 5 of 27)	20188.0	NM_029606	76380.0	Mm.344071	NM_029586	ENSMUSG00000020728	Cep112	1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco	centrosomal protein 112	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67700542-4	chr18	67700043	67701043	+	928.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008977, intron 2 of 9)	intron (NM_008977, intron 2 of 9)	24078.0	NM_001127177	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	20.5	87.5	38.5	35.0	77.5	53.5
Merged-chr4-139212308-4	chr4	139211795	139212795	+	928.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	MIRb|SINE|MIR	18184.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	50.0	70.0	83.0	13.0	41.5	29.5
Merged-chr17-12314211-3	chr17	12313754	12314754	+	928.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357722, intron 1 of 25)	intron (NM_001357722, intron 1 of 25)	4406.0	NM_011948	26407.0	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95661017-3	chr3	95660506	95661506	+	928.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008562, exon 3 of 3)	3' UTR (NM_008562, exon 3 of 3)	2285.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33912165-4	chr16	33911684	33912684	+	928.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 9 of 14)	intron (NM_001145884, intron 9 of 14)	54854.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121484340-3	chr10	121483833	121484833	+	928.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-8083.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94838293-3	chr13	94837793	94838793	+	928.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009321, intron 3 of 3)	intron (NM_009321, intron 3 of 3)	-37334.0	NM_011021	18420.0	Mm.42051	NM_011021	ENSMUSG00000021685	Otp	-	orthopedia homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127142336-3	chr2	127141816	127142816	+	928.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355634, intron 1 of 2)	intron (NM_001355634, intron 1 of 2)	274.0	NM_001163528	73338.0	Mm.57559	NM_001163527	ENSMUSG00000074825	Itpripl1	1700041B20Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 1	protein-coding	10.5	35.0	30.0	10.0	32.0	35.0
Merged-chr2-13270836-3	chr2	13270327	13271327	+	928.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009105, intron 2 of 8)	intron (NM_009105, intron 2 of 8)	588.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65202117-3	chr9	65201601	65202601	+	928.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12589.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32893440-4	chr12	32892934	32893934	+	928.30835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	60355.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	13.5	27.5	18.5	19.5	36.5	16.5
Merged-chr2-62648808-4	chr2	62648306	62649306	+	928.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2551.0	NM_001164477	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-10228196-4	chr14	10227723	10228723	+	928.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 5 of 9)	intron (NM_001360141, intron 5 of 9)	225235.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-5708650-4	chr15	5708146	5709146	+	928.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	212328.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-48446128-3	chr6	48445647	48446647	+	928.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085417)	promoter-TSS (NM_001085417)	-322.0	NM_001355746	68910.0	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	2.0	15.0	3.5	0.0	13.5	5.0
Merged-chr8-108748406-3	chr8	108747906	108748906	+	928.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	33762.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-75886479-4	chr16	75885995	75886995	+	928.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023380, intron 2 of 7)	intron (NM_023380, intron 2 of 7)	22771.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84853908-3	chr15	84853378	84854378	+	928.2666630000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356573, intron 2 of 12)	CpG	1221.0	NM_001356573	271305.0	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114276677-4	chr7	114276197	114277197	+	928.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011965)	promoter-TSS (NM_011965)	-581.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	1.0	0.5	3.5	2.0	5.0	0.5
Merged-chr7-19300024-2	chr7	19299524	19300524	+	928.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8955.0	NM_001025364	20167.0	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55696207-3	chr13	55695716	55696716	+	928.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181278, intron 1 of 1)	B4A|SINE|B4	3092.0	NM_181278	78521.0	Mm.28449	NM_181278	ENSMUSG00000045767	B230219D22Rik	AA119856|D530037I19Rik	RIKEN cDNA B230219D22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102906451-4	chr14	102905945	102906945	+	928.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76187.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69848784-2	chr11	69848297	69849297	+	928.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168497, intron 6 of 7)	intron (NM_001168497, intron 6 of 7)	2153.0	NR_033133	70310.0	Mm.28874	NM_023564	ENSMUSG00000019461	Plscr3	2210403O21Rik|2610037N06Rik|ESTM3|X83310	phospholipid scramblase 3	protein-coding	0.0	5.0	5.5	13.0	17.5	12.0
Merged-chr11-116102224-2	chr11	116101724	116102724	+	928.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger16a|DNA|TcMar-Tigger	8011.0	NM_001205081	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-10823039-4	chr18	10822549	10823549	+	928.241699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37497.0	NR_029781	723959.0		NR_029781	ENSMUSG00000106348	Mir1a-2	Mir1-2|Mirn1-2|mir-1a-2|mmu-mir-1-2|mmu-mir-1a-2	microRNA 1a-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30683625-3	chr7	30683121	30684121	+	928.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-12016.0	NR_027848	74927.0	Mm.87326	NM_183108	ENSMUSG00000049761	Pmis2	1700071L20Rik|4930479M11Rik	Pmis2, sperm specific protein	ncRNA	0.0	0.5	0.5	1.5	0.0	5.5
Merged-chr17-5830155-3	chr17	5829653	5830653	+	928.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11227.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-5471323-3	chr16	5470815	5471815	+	928.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-215359.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76538095-3	chr16	76537648	76538648	+	928.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10647.0	NR_155449	102632730.0		NR_155449		Gm30726	-	predicted gene, 30726	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171038124-4	chr1	171037628	171038628	+	928.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	19202.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72822622-3	chr5	72822122	72823122	+	928.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	45826.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44384386-3	chr10	44383884	44384884	+	928.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24708.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-34959663-4	chr4	34959146	34960146	+	928.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 3 of 3)	intron (NM_178061, intron 3 of 3)	-48165.0	NR_040652	73696.0	Mm.1361	NR_040652	ENSMUSG00000085824	Platr9	2410114N07Rik	pluripotency associated transcript 9	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117147396-3	chr5	117146902	117147902	+	928.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	13814.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	12.0	20.5	11.0	19.0	39.0	36.5
Merged-chr3-9666554-2	chr3	9666054	9667054	+	928.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56469.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62342047-2	chr9	62341547	62342547	+	928.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 1 of 6)	CpG	704.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137831298-4	chr5	137830821	137831821	+	928.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153510, exon 3 of 7)	exon (NM_153510, exon 3 of 7)	4957.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117353325-4	chr11	117352820	117353820	+	928.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017380, intron 5 of 9)	intron (NM_017380, intron 5 of 9)	21007.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-31198803-4	chr9	31198315	31199315	+	928.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357698, intron 1 of 17)	intron (NM_001357698, intron 1 of 17)	13033.0	NM_001357698	11804.0	Mm.19133	NM_009691	ENSMUSG00000031996	Aplp2	AI790698|APLP-2|CDEBP	amyloid beta (A4) precursor-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-40476351-4	chr6	40475853	40476853	+	928.1416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212468, intron 3 of 6)	intron (NM_212468, intron 3 of 6)	4885.0	NM_001286663	381760.0	Mm.276356	NM_028358	ENSMUSG00000029911	Ssbp1	2810480P10Rik|G630031O20Rik|MtSSB|mtDBP	single-stranded DNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33785505-4	chr16	33784994	33785994	+	928.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8543.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-36190570-4	chr12	36190067	36191067	+	928.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146033, intron 7 of 9)	intron (NM_146033, intron 7 of 9)	27651.0	NM_027699	71156.0	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136635952-4	chr1	136635490	136636490	+	928.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11089.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34372159-4	chr2	34371675	34372675	+	928.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016768)	promoter-TSS (NM_016768)	-130.0	NM_016768	18516.0	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86202830-4	chr1	86202328	86203328	+	928.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027456, intron 17 of 20)	intron (NM_027456, intron 17 of 20)	48048.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60211032-3	chr11	60210542	60211542	+	928.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358314)	promoter-TSS (NM_001358314)	-571.0	NM_001358314	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-7845785-4	chr6	7845281	7846281	+	928.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_052993, intron 1 of 3)	intron (NM_052993, intron 1 of 3)	557.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88379942-4	chr6	88379455	88380455	+	928.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023060, intron 1 of 6)	intron (NM_023060, intron 1 of 6)	66584.0	NM_023060	65967.0	Mm.333237	NM_023060	ENSMUSG00000033216	Eefsec	Selb|mSelB|sec	eukaryotic elongation factor, selenocysteine-tRNA-specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109249035-4	chr3	109248497	109249497	+	928.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-91686.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	2.5	0.0	1.0	1.5	0.0	0.0
Merged-chr4-75463751-4	chr4	75463242	75464242	+	928.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-185450.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140608921-4	chr5	140608421	140609421	+	928.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008494, intron 1 of 7)	intron (NM_008494, intron 1 of 7)	1580.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84567689-4	chr8	84567195	84568195	+	928.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007578, exon 21 of 47)	exon (NM_007578, exon 21 of 47)	95157.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	4.5	3.0	20.0	9.0	5.0	28.5
Merged-chr16-48863486-3	chr16	48863026	48864026	+	928.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-9082.0	NM_181596	245195.0	Mm.231288	NM_181596	ENSMUSG00000022651	Retnlg	Fizz3|Relmg|Xcp1	resistin like gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-129526218-3	chr7	129525726	129526726	+	928.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65637.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-80263084-4	chr8	80262585	80263585	+	928.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-205077.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108180348-4	chr12	108179865	108180865	+	928.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009832, intron 1 of 11)	intron (NM_009832, intron 1 of 11)	627.0	NM_009832	12454.0	Mm.474441	NM_009832	ENSMUSG00000021258	Ccnk	AW123198|AW413594|CPR4|CycK	cyclin K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-10494193-4	chr7	10493689	10494689	+	928.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009577, intron 2 of 3)	intron (NM_009577, intron 2 of 3)	1192.0	NM_009577	22775.0	Mm.49441	NM_009577	ENSMUSG00000030393	Zik1	-	zinc finger protein interacting with K protein 1	protein-coding	0.0	0.0	1.5	0.0	0.0	0.5
Merged-chr18-74991254-4	chr18	74990733	74991733	+	928.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9244.0	NM_001002239	319195.0	Mm.276337	NM_001002239	ENSMUSG00000062328	Rpl17	-	ribosomal protein L17	protein-coding	0.0	0.0	0.0	7.5	8.0	1.0
Merged-chr11-116535202-2	chr11	116534702	116535702	+	928.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172472, intron 4 of 5)	intron (NM_001172472, intron 4 of 5)	462.0	NM_011451	20698.0	Mm.20944	NM_011451	ENSMUSG00000061878	Sphk1	1110006G24Rik|Sk1|Spk1	sphingosine kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101147303-2	chr15	101146830	101147830	+	928.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18808.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	4.5	4.5	10.0	2.0	6.0	5.0
Merged-chr10-8880230-2	chr10	8879709	8880709	+	928.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	B1F|SINE|Alu	5861.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	39.0	83.0	55.5	36.0	88.0	58.5
Merged-chr3-94814523-3	chr3	94814016	94815016	+	928.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23051.0	NM_001165948	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67127198-4	chr10	67126684	67127684	+	928.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207221)	promoter-TSS (NM_207221)	-74.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-33149101-1	chr4	33148601	33149601	+	928.0	f1_c57bl6.idr	intron (NM_008075, intron 3 of 9)	intron (NM_008075, intron 3 of 9)	16545.0	NM_008075	14408.0	Mm.14116	NM_008075	ENSMUSG00000028280	Gabrr1	GABA-C	gamma-aminobutyric acid (GABA) C receptor, subunit rho 1	protein-coding	0.0	1.0	1.5	0.0	5.5	0.5
Merged-chr10-24633232-2	chr10	24632732	24633732	+	928.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2A|LINE|L1	37790.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27178769-3	chr14	27178290	27179290	+	928.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	MLT1D|LTR|ERVL-MaLR	34797.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132943225-2	chr4	132942725	132943725	+	928.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20674.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	2.0	0.0	0.5	3.5	0.0	0.0
Merged-chr15-38713557-2	chr15	38713057	38714057	+	928.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_131206)	TTS (NR_131206)	14959.0	NR_131206	105463124.0	Mm.432448	NR_131206	ENSMUSG00000115620	Gm45924	Borg	predicted gene, 45924	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3855990-2	chr8	3855490	3856490	+	928.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1704.0	NM_130905	170780.0	Mm.52281	NM_130905	ENSMUSG00000040197	Cd209e	SIGNR4|mSIGNR4	CD209e antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81184717-2	chr10	81184217	81185217	+	928.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190473, intron 2 of 8)	intron (NM_001190473, intron 2 of 8)	799.0	NM_007828	13144.0	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-18954728-2	chr8	18954228	18955228	+	928.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-3753.0	NM_001113350	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51654557-3	chr3	51654085	51655085	+	928.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6594.0	NM_174995	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77713490-3	chr18	77712909	77713909	+	928.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027978)	promoter-TSS (NR_027978)	601.0	NM_178670	212163.0	Mm.23293	NM_178670	ENSMUSG00000047466	8030462N17Rik	Akd2|Ark2N	RIKEN cDNA 8030462N17 gene	protein-coding	0.0	10.0	12.5	6.0	6.5	15.0
Merged-chr14-79559004-2	chr14	79558504	79559504	+	928.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 2 of 8)	B3|SINE|B2	-28656.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23304911-2	chr11	23304411	23305411	+	928.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1984.0	NM_001190401	17847.0	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4162968-1	chr12	4162468	4163468	+	928.0	f0_balb.idr	intron (NM_001159537, intron 2 of 21)	intron (NM_001159537, intron 2 of 21)	28815.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86182077-4	chr15	86181636	86182636	+	928.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-3592.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31021709-2	chr17	31021244	31022244	+	928.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35950.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	5.0	7.5	5.0	4.0	8.5	7.0
Merged-chr6-145275043-1	chr6	145274543	145275543	+	928.0	f1_c57bl6.idr	Intergenic	Intergenic	24491.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	16.5	40.0	20.0	10.5	38.5	30.0
Merged-chr15-79331888-2	chr15	79331388	79332388	+	928.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3517.0	NM_001199023	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-9328612-2	chr11	9328117	9329117	+	928.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 24 of 61)	MTD|LTR|ERVL-MaLR	136675.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	0.0	2.5	3.5	5.5	4.0	3.0
Merged-chr6-17754626-3	chr6	17754134	17755134	+	928.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	intron (NM_022332, intron 1 of 15)	5464.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66139452-2	chr5	66138952	66139952	+	928.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	11526.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	56.5	118.5	120.5	49.0	126.0	79.0
Merged-chr7-118843215-3	chr7	118842728	118843728	+	928.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001168220, exon 5 of 5)	3' UTR (NM_001168220, exon 5 of 5)	12385.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	0.5	4.5	1.0	0.0	0.0	0.0
Merged-chr8-84002836-1	chr8	84002336	84003336	+	928.0	f1_balb.idr	intron (NM_183097, intron 1 of 5)	intron (NM_183097, intron 1 of 5)	1130.0	NM_183097	73453.0	Mm.75101	NM_183097	ENSMUSG00000046408	1700067K01Rik	-	RIKEN cDNA 1700067K01 gene	protein-coding	4.5	2.0	9.0	0.0	15.0	5.0
Merged-chr7-142098014-4	chr7	142097519	142098519	+	928.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2735.0	NM_008748	18218.0	Mm.39725	NM_008748	ENSMUSG00000037887	Dusp8	5530400B01Rik|AI593498|Nttp1	dual specificity phosphatase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100707651-1	chr7	100707151	100708151	+	928.0	f1_c57bl6.idr	intron (NM_001362170, intron 1 of 7)	intron (NM_001362170, intron 1 of 7)	1016.0	NM_001362170	319604.0	Mm.260362	NM_178764	ENSMUSG00000029461	Fam168a	2610030B18Rik|B930006L02Rik|mKIAA0280	family with sequence similarity 168, member A	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr9-85567448-1	chr9	85566948	85567948	+	928.0	f1_c57bl6.idr	Intergenic	Intergenic	181886.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	0.5	10.0	5.0	0.0	7.5	8.0
Merged-chr2-3414435-2	chr2	3413935	3414935	+	928.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355205, intron 1 of 3)	B3A|SINE|B2	4162.0	NM_001355210	104362.0	Mm.2688	NM_008579	ENSMUSG00000026650	Meig1	MLZ-278|Meg1	meiosis expressed gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-55113177-7	chr3	55112666	55113666	+	928.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001144987, intron 1 of 8)	intron (NM_001144987, intron 1 of 8)	1000.0	NM_001144987	229285.0	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|Spart|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-18887116-4	chr10	18886619	18887619	+	928.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42048.0	NM_022032	64058.0	Mm.28209	NM_022032	ENSMUSG00000019851	Perp	1110017A08Rik|KCP1|KRTCAP1|PIGPC1|THW	PERP, TP53 apoptosis effector	protein-coding	1.5	19.0	7.5	0.0	6.0	11.5
Merged-chr15-103165642-4	chr15	103165157	103166157	+	927.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2373.0	NM_027885	71726.0	Mm.254820	NM_027885	ENSMUSG00000036061	Smug1	1200013B09Rik|A930006H09Rik|C85220	single-strand selective monofunctional uracil DNA glycosylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-76430116-4	chr5	76429596	76430596	+	927.962524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53981.0	NR_033501	639545.0	Mm.478255	NR_033501	ENSMUSG00000091204	Gm7271	EG639545	predicted gene 7271	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99297333-4	chr5	99296829	99297829	+	927.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_030692)	TTS (NR_030692)	-44402.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	23.5	48.5	66.5	13.5	52.0	34.5
Merged-chr2-93199005-4	chr2	93198451	93199451	+	927.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001356535, exon 7 of 9)	exon (NM_001356535, exon 7 of 9)	11403.0	NM_001025246	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57441238-4	chr16	57440750	57441750	+	927.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	87973.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-9799143-4	chr1	9798661	9799661	+	927.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177547, intron 1 of 16)	intron (NM_177547, intron 1 of 16)	1031.0	NM_177547	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	61.5	100.5	82.5	51.5	91.0	83.5
Merged-chr3-21961992-4	chr3	21961506	21962506	+	927.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114646.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31373218-4	chr6	31372725	31373725	+	927.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040300, intron 2 of 2)	intron (NR_040300, intron 2 of 2)	25548.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153208323-4	chr2	153207823	153208823	+	927.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 17 of 17)	MTC|LTR|ERVL-MaLR	17118.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-15194562-4	chr3	15194071	15195071	+	927.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137731.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40876931-4	chr4	40876506	40877506	+	927.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22469.0	NM_022305	14595.0	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45724394-4	chr17	45723892	45724892	+	927.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9452.0	NM_028164	72240.0	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding	5.0	0.0	1.0	0.0	0.0	0.0
Merged-chr16-4558086-4	chr16	4557579	4558579	+	927.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031182, intron 1 of 6)	intron (NM_031182, intron 1 of 6)	1641.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96001122-4	chr10	96000624	96001624	+	927.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001932, intron 9 of 28)	intron (NM_001001932, intron 9 of 28)	60461.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31079159-3	chr6	31078648	31079648	+	927.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16055.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118090121-3	chr14	118089619	118090619	+	927.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37873.0	NM_010024	13190.0	Mm.19987	NM_010024	ENSMUSG00000022129	Dct	DT|TRP-2|TRP2|Tyrp-2|Tyrp2|slaty|slt	dopachrome tautomerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-13130894-3	chr14	13130392	13131392	+	927.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3a|LINE|L1	153746.0	NR_121589	328354.0	Mm.252404	NM_177813	ENSMUSG00000051729	Gm5087	C630025C03|EG328354	predicted gene 5087	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-133635746-4	chr7	133635248	133636248	+	927.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1927.0	NM_178115	214764.0	Mm.174044	NM_145995	ENSMUSG00000039990	Edrf1	2700050L05Rik|AU022667|AW558805	erythroid differentiation regulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52073366-2	chr2	52072866	52073866	+	927.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355414, intron 2 of 35)	CpG-8094	529.0	NM_175238	51869.0	Mm.254530	NM_175238	ENSMUSG00000036202	Rif1	5730435J01Rik|6530403D07Rik|AU016181|AW549474|D2Ertd145e	replication timing regulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44552240-2	chr7	44551740	44552740	+	927.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001285517, exon 5 of 10)	exon (NM_001285517, exon 5 of 10)	1725.0	NM_009473	22260.0	Mm.968	NM_009473	ENSMUSG00000060601	Nr1h2	AI194859|LXR|LXRB|LXRBSV|LXRbeta|NER1|OR-1|RIP15|UR|Unr|Unr2	nuclear receptor subfamily 1, group H, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21507826-2	chr9	21507326	21508326	+	927.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001253893)	TTS (NM_001253893)	2068.0	NM_001324510	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8660076-4	chr11	8659592	8660592	+	927.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	4443.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	22.5	35.5	32.5	47.0	86.0	50.5
Merged-chr13-76262637-3	chr13	76262146	76263146	+	927.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-122315.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	0.0	5.0	1.0	1.5	0.0	0.5
Merged-chr3-69691225-4	chr3	69690722	69691722	+	927.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-30833.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	2.5	9.0	3.0	0.0	1.0	1.0
Merged-chr14-21273729-4	chr14	21273233	21274233	+	927.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134079, intron 6 of 10)	MIRc|SINE|MIR	197581.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	0.0	0.5	2.0	0.0	0.0	3.5
Merged-chr2-138246064-4	chr2	138245574	138246574	+	927.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16C|LTR|ERVL	-10510.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66280296-4	chr14	66279791	66280791	+	927.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	761.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	9.0	46.0	27.5	2.0	24.5	13.0
Merged-chr13-102666956-4	chr13	102666452	102667452	+	927.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-26595.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128743153-10	chr2	128742617	128743617	+	927.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 4 of 18)	B3|SINE|B2	44202.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	6.0	9.0	14.0	14.5	22.0	9.0
Merged-chr8-122475272-5	chr8	122474816	122475816	+	927.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153775)	promoter-TSS (NM_153775)	748.0	NM_001033142	68718.0	Mm.34356	NM_001033142	ENSMUSG00000014470	Rnf166	1110031E24Rik|AW555115|Zfp313l	ring finger protein 166	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100421937-5	chr12	100421440	100422440	+	927.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 5 of 19)	intron (NM_001033213, intron 5 of 19)	98882.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-10921101-3	chr15	10920590	10921590	+	927.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31242.0	NM_030888	81799.0	Mm.280158	NM_030888	ENSMUSG00000058914	C1qtnf3	2310005P21Rik|CORS-26|CORS26|CTRP3|Corcs|Cors	C1q and tumor necrosis factor related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87923837-4	chr6	87923340	87924340	+	927.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173737, intron 4 of 6)	intron (NM_173737, intron 4 of 6)	9864.0	NM_173737	232210.0	Mm.246241	NM_173737	ENSMUSG00000030060	Hmces	8430410A17Rik|C85376	5-hydroxymethylcytosine (hmC) binding, ES cell specific	protein-coding	6.5	12.0	1.5	4.5	5.0	10.0
Merged-chr14-102942578-4	chr14	102942038	102943038	+	927.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40094.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88047997-4	chr6	88047497	88048497	+	927.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2727.0	NM_009005	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85945101-3	chr12	85944610	85945610	+	927.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 28 of 32)	Lx9|LINE|L1	120160.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7850790-3	chr10	7850275	7851275	+	927.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172785, intron 2 of 5)	intron (NM_172785, intron 2 of 5)	14394.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	22.0	7.5	19.5	28.5	52.0	48.0
Merged-chr7-102032690-3	chr7	102032194	102033194	+	927.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 4 of 8)	MTC|LTR|ERVL-MaLR	-14539.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33816903-3	chr17	33816443	33817443	+	927.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357162, intron 2 of 5)	intron (NM_001357162, intron 2 of 5)	6420.0	NM_030697	80880.0	Mm.196330	NM_030697	ENSMUSG00000042099	Kank3	0610013D04Rik|Ankrd47|D17Ertd288e|NG28	KN motif and ankyrin repeat domains 3	protein-coding	84.5	200.5	117.0	106.5	268.5	178.5
Merged-chr15-81103049-2	chr15	81102549	81103549	+	927.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	1998.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	32.5	32.0	17.5	35.5	71.0	66.0
Merged-chr4-59368318-4	chr4	59367802	59368802	+	927.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 9 of 16)	intron (NM_001163288, intron 9 of 16)	70331.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	3.5	18.5	5.5	8.5	16.5	21.0
Merged-chr10-13871237-3	chr10	13870731	13871731	+	927.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152745)	promoter-TSS (NR_152745)	-49.0	NR_152745	102634635.0		NR_152745	ENSMUSG00000112172	Gm32172	-	predicted gene, 32172	ncRNA	13.5	8.5	7.0	4.5	11.0	7.0
Merged-chr11-50345669-4	chr11	50345162	50346162	+	927.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12217.0	NR_030529	100049547.0		NR_030529	ENSMUSG00000076450	Mir804	Mirn804|mmu-mir-804	microRNA 804	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55605017-4	chr14	55604507	55605507	+	927.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159418, intron 1 of 8)	B1_Mur1|SINE|Alu	428.0	NM_001159418	16391.0	Mm.2032	NM_008394	ENSMUSG00000002325	Irf9	Irf-9|Isgf3g|p48	interferon regulatory factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135630057-4	chr1	135629499	135630499	+	927.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32223.0	NR_151586	215714.0	Mm.472859	NM_175447		Gm4793	EG215714	predicted gene 4793	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79071847-4	chr15	79071353	79072353	+	927.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3370.0	NM_145139	223691.0	Mm.206404	NM_145139	ENSMUSG00000033047	Eif3l	0610011H21Rik|D15N1e|Eif3eip|Eif3ip|Eif3s6ip|HSP-66Y|PAF67	eukaryotic translation initiation factor 3, subunit L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5636732-4	chr19	5636235	5637235	+	927.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009045)	promoter-TSS (NM_009045)	-755.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	105.5	223.0	181.0	112.5	215.0	159.5
Merged-chr3-148316370-3	chr3	148315870	148316870	+	927.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	638265.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	4.0	4.0	4.0	1.5	5.0	6.0
Merged-chr16-75929721-4	chr16	75929209	75930209	+	927.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20443.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115530658-4	chr5	115530135	115531135	+	927.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	23959.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32184238-4	chr18	32183736	32184736	+	927.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011946, intron 1 of 16)	Lx9|LINE|L1	21147.0	NM_011946	26405.0	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34380503-4	chr7	34379994	34380994	+	927.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025948, intron 1 of 10)	intron (NM_025948, intron 1 of 10)	9211.0	NM_001360654	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11716867-3	chr11	11716371	11717371	+	927.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301865, intron 3 of 6)	intron (NM_001301865, intron 3 of 6)	26694.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.0	1.0	2.5	0.0	0.5	2.0
Merged-chr12-85646305-2	chr12	85645805	85646805	+	927.714233	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40415.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-24215111-4	chr18	24214599	24215599	+	927.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361200, intron 1 of 12)	L1MDa|LINE|L1	9105.0	NM_001160404	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-73044291-4	chr9	73043795	73044795	+	927.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023635)	promoter-TSS (NM_023635)	-515.0	NM_023635	11891.0	Mm.34867	NM_023635	ENSMUSG00000032202	Rab27a	2210402C08Rik|2410003M20Rik|4933437C11Rik|ash	RAB27A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132367820-4	chr1	132367356	132368356	+	927.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311108)	promoter-TSS (NM_001311108)	92.0	NM_001311108	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95564397-7	chr9	95563883	95564883	+	927.676208	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4566.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-39820222-3	chr5	39819737	39820737	+	927.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-175606.0	NM_010474	15476.0	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86671027-4	chr6	86670508	86671508	+	927.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1849.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-42866388-3	chr13	42865891	42866891	+	927.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001302636, exon 1 of 13)	5' UTR (NM_001302636, exon 1 of 13)	144.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165329955-4	chr2	165329478	165330478	+	927.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3499.0	NM_207706	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56253524-3	chr19	56253048	56254048	+	927.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-34364.0	NM_001329936	226243.0	Mm.25791	NM_146101	ENSMUSG00000025075	Habp2	AI035669|FSAP|HABP|HGFAL|PHBP	hyaluronic acid binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-82333778-3	chr3	82333241	82334241	+	927.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24331.0	NM_001081230	213582.0	Mm.271269	NM_001081230	ENSMUSG00000033900	Map9	5033421J10Rik|5330427D05Rik|ASAP|Mtap9	microtubule-associated protein 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-37279047-4	chr12	37278554	37279554	+	927.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178767, intron 3 of 12)	intron (NM_178767, intron 3 of 12)	37415.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	6.0	3.0	0.5	8.5	5.5	2.0
Merged-chr11-113683452-3	chr11	113682952	113683952	+	927.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361593)	promoter-TSS (NM_001361593)	699.0	NM_138598	28081.0	Mm.351688	NM_138598	ENSMUSG00000041629	Fam104a	D11Wsu99e	family with sequence similarity 104, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-26425272-3	chr12	26424823	26425823	+	927.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10061.0	NM_080563	108089.0	Mm.214932	NM_080563	ENSMUSG00000020642	Rnf144a	Rnf144|UIP4|Ubce7ip4	ring finger protein 144A	protein-coding	8.5	0.0	0.0	11.0	22.5	33.0
Merged-chr16-26626215-3	chr16	26625671	26626671	+	927.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152416, intron 2 of 12)	intron (NR_152416, intron 2 of 12)	44466.0	NM_008364	16180.0	Mm.253424	NM_008364	ENSMUSG00000022514	Il1rap	6430709H04Rik|AI255955|AV239853|IL-1RAcP	interleukin 1 receptor accessory protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-49764731-2	chr2	49764231	49765231	+	927.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008449, intron 25 of 25)	intron (NM_008449, intron 25 of 25)	-22955.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-27000195-4	chr9	26999677	27000677	+	927.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025862)	promoter-TSS (NM_025862)	500.0	NM_001326361	77862.0	Mm.16925	NM_144543	ENSMUSG00000035443	Thyn1	D730042P09Rik|HSPC144|MDS012|MY105|Thy28	thymocyte nuclear protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-137473124-4	chr6	137472639	137473639	+	927.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	46756.0	NM_001271589	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139130345-4	chr4	139129856	139130856	+	927.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163006, intron 1 of 3)	CpG	681.0	NR_033745	433771.0	Mm.305990	NM_001163006	ENSMUSG00000050608	Minos1	2310028O11Rik	mitochondrial inner membrane organizing system 1	protein-coding	34.0	112.5	92.0	48.0	174.0	112.5
Merged-chr7-122670992-4	chr7	122670482	122671482	+	927.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019430)	promoter-TSS (NM_019430)	-762.0	NM_019430	54376.0	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-8678021-4	chr18	8677518	8678518	+	927.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-534838.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	36.5	131.0	63.0	14.0	31.0	25.5
Merged-chr14-33240604-4	chr14	33240104	33241104	+	927.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	23781.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70605802-4	chr8	70605298	70606298	+	927.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133772, intron 1 of 16)	intron (NM_133772, intron 1 of 16)	2516.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	0.5	3.0	9.5	4.5	4.0	14.5
Merged-chr11-115657110-4	chr11	115656595	115657595	+	927.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	-28800.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119251032-4	chr2	119250529	119251529	+	927.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13669.0	NM_016907	20732.0	Mm.104955	NM_016907	ENSMUSG00000027315	Spint1	HAI-1	serine protease inhibitor, Kunitz type 1	protein-coding	1.5	1.0	5.0	0.0	1.5	4.0
Merged-chr1-95762411-4	chr1	95761902	95762902	+	927.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45884.0	NR_040479	75381.0	Mm.417807	NR_040479	ENSMUSG00000100777	4930598F16Rik	-	RIKEN cDNA 4930598F16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-15061374-4	chr14	15060877	15061877	+	927.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	240562.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-16897412-3	chr12	16896913	16897913	+	927.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009072, intron 1 of 32)	MTC|LTR|ERVL-MaLR	2435.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	11.5	26.0	18.0	52.5	37.0	46.0
Merged-chr4-128797045-4	chr4	128796549	128797549	+	927.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081098, intron 1 of 8)	L1M5|LINE|L1	9063.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116697598-2	chr6	116697098	116698098	+	927.5833130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_178768, intron 3 of 4)	intron (NM_178768, intron 3 of 4)	19160.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-35764846-4	chr3	35764350	35765350	+	927.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151627, intron 1 of 31)	intron (NR_151627, intron 1 of 31)	10787.0	NM_029570	76295.0	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7244988-3	chr9	7244523	7245523	+	927.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-27491.0	NM_008607	17386.0	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-12471746-4	chr16	12471233	12472233	+	927.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-339657.0	NR_040507	75493.0	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	0.0	1.5	0.0	0.0	1.5	0.5
Merged-chr8-26023910-4	chr8	26023438	26024438	+	927.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_207659, exon 22 of 22)	3' UTR (NM_207659, exon 22 of 22)	-8337.0	NM_008033	14272.0	Mm.3496	NM_008033	ENSMUSG00000015994	Fnta	FTA	farnesyltransferase, CAAX box, alpha	protein-coding	17.0	19.5	21.5	12.5	22.5	28.5
Merged-chr19-4284482-3	chr19	4283980	4284980	+	927.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1343.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-69655651-3	chr18	69655139	69656139	+	927.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 14 of 19)	intron (NM_001361128, intron 14 of 19)	-269920.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-83727715-3	chr9	83727217	83728217	+	927.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36242.0	NR_046066	100039222.0	Mm.405596	NR_046066	ENSMUSG00000100155	Gm2109	-	predicted gene 2109	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-48745175-4	chr9	48744683	48745683	+	927.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033324, intron 2 of 6)	intron (NM_001033324, intron 2 of 6)	90762.0	NM_001033324	235320.0	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding	10.0	14.0	1.5	0.0	0.0	0.0
Merged-chr13-62971056-4	chr13	62970541	62971541	+	927.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 1 of 15)	intron (NM_001289926, intron 1 of 15)	6148.0	NM_001289924	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	1.0	5.0	1.0	4.0	5.0	0.0
Merged-chr13-64439233-4	chr13	64438714	64439714	+	927.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_053180, exon 8 of 8)	3' UTR (NM_053180, exon 8 of 8)	6661.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	6.5	1.5	4.0	6.0	3.5	1.5
Merged-chr3-90710221-4	chr3	90709727	90710727	+	927.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-14506.0	NM_001281852	20202.0	Mm.2128	NM_009114	ENSMUSG00000056071	S100a9	60B8Ag|AW546964|BEE22|Cagb|GAGB|L1Ag|MRP14|p14	S100 calcium binding protein A9 (calgranulin B)	protein-coding	0.0	2.5	0.0	0.0	0.0	0.5
Merged-chr14-13995666-5	chr14	13995223	13996223	+	927.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16768.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	7.5	7.0	4.5	12.0	7.0	4.5
Merged-chr7-30592596-4	chr7	30592111	30593111	+	927.520874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021397, intron 1 of 5)	intron (NM_021397, intron 1 of 5)	331.0	NM_021397	58206.0	Mm.116789	NM_021397	ENSMUSG00000006310	Zbtb32	4930524C15Rik|FAXF|FAZF|PLZP|Rog|Tzfp	zinc finger and BTB domain containing 32	protein-coding	18.5	24.0	6.5	18.5	27.0	10.0
Merged-chr2-153276356-3	chr2	153275858	153276858	+	927.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-15058.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-98297593-5	chr9	98297208	98298208	+	927.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357445, intron 1 of 3)	MTD|LTR|ERVL-MaLR	1138.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67146874-4	chr15	67146356	67147356	+	927.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 2 of 8)	intron (NM_009177, intron 2 of 8)	30026.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6679903-4	chr19	6679416	6680416	+	927.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-136846.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21704684-4	chr16	21704195	21705195	+	927.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10030.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20151494-4	chr11	20151006	20152006	+	927.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1-int|LTR|ERVL-MaLR	-38555.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr2-167367983-4	chr2	167367478	167368478	+	927.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18800.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147349514-2	chr4	147348971	147349971	+	927.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	A-rich|Low_complexity|Low_complexity	173605.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93722955-2	chr1	93722455	93723455	+	927.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025920, intron 3 of 5)	MTD|LTR|ERVL-MaLR	8971.0	NM_001310761	67026.0	Mm.272356	NM_025920	ENSMUSG00000026279	Thap4	2010320B01Rik	THAP domain containing 4	protein-coding	3.0	0.0	1.0	0.5	1.5	6.0
Merged-chr7-28437897-2	chr7	28437397	28438397	+	927.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290550, intron 1 of 5)	B1_Mus2|SINE|Alu	450.0	NM_001290550	63986.0	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118690600-2	chr9	118690080	118691080	+	927.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 14 of 27)	intron (NM_133721, intron 14 of 27)	-21112.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	1.5	8.0	2.0	2.0	0.0	5.0
Merged-chr18-78808088-4	chr18	78807597	78808597	+	927.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053099, intron 4 of 5)	MIRb|SINE|MIR	-211147.0	NM_207651	27411.0	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71609495-2	chr8	71609049	71610049	+	927.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-1475.0	NM_146211	234407.0	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	18.5	15.5	23.0	38.5	65.0	84.5
Merged-chr2-30411076-2	chr2	30410576	30411576	+	927.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007760, intron 2 of 13)	intron (NM_007760, intron 2 of 13)	4672.0	NM_007760	12908.0	Mm.20396	NM_007760	ENSMUSG00000026853	Crat	AW107812|CARAT	carnitine acetyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45889152-3	chr13	45888651	45889651	+	927.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 2 of 6)	(CA)n|Simple_repeat|Simple_repeat	75840.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25584650-2	chr14	25584150	25585150	+	927.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 6 of 23)	intron (NM_183208, intron 6 of 23)	-2154.0	NR_033492	77592.0	Mm.444871	NM_175264		4931406H21Rik	-	RIKEN cDNA 4931406H21 gene	ncRNA	1.0	0.0	0.5	0.0	0.0	0.0
Merged-chr9-99089212-2	chr9	99088712	99089712	+	927.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 7 of 23)	B1_Mus2|SINE|Alu	50999.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117340887-2	chr2	117340387	117341387	+	927.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 1 of 16)	intron (NM_011246, intron 1 of 16)	1990.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81172058-2	chr10	81171558	81172558	+	927.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-4338.0	NM_021501	59004.0	Mm.34428	NM_021501	ENSMUSG00000004934	Pias4	PIASY|Pias-gamma|Piasg	protein inhibitor of activated STAT 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-72759434-2	chr12	72758934	72759934	+	927.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1777.0	NM_008910	19042.0	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32129008-2	chr5	32128508	32129508	+	927.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-7464.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134175905-2	chr5	134175405	134176405	+	927.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033572, intron 1 of 10)	intron (NM_033572, intron 1 of 10)	862.0	NM_033572	94254.0	Mm.29508	NM_033572	ENSMUSG00000061979	Rcc1l	5730496C04Rik|AU019812|Wbscr16	reculator of chromosome condensation 1 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32537768-4	chr2	32537260	32538260	+	927.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153560, intron 1 of 10)	MIRb|SINE|MIR	2401.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27747224-2	chr2	27746724	27747724	+	927.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 4 of 9)	intron (NM_001290481, intron 4 of 9)	36641.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-56163046-4	chr13	56162546	56163546	+	927.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15839.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	0.0	2.0	0.5	0.0	1.0	0.0
Merged-chr8-121586746-2	chr8	121586246	121587246	+	927.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3722.0	NM_026160	67443.0	Mm.28357	NM_026160	ENSMUSG00000031812	Map1lc3b	1010001C15Rik|Atg8|LC3b|Map1lc3	microtubule-associated protein 1 light chain 3 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31365592-2	chr14	31365092	31366092	+	927.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009796, intron 15 of 20)	intron (NM_009796, intron 15 of 20)	28954.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115765309-2	chr6	115764809	115765809	+	927.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CCAA)n|Simple_repeat|Simple_repeat	-2843.0	NM_001168256	94346.0	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16823064-2	chr7	16822564	16823564	+	927.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133789, exon 3 of 18)	exon (NM_133789, exon 3 of 18)	-6332.0	NM_173430	243853.0	Mm.39703	NM_173430	ENSMUSG00000048920	Fkrp	A830029B19Rik|AI842067|AI847300|LGMD1I|MDC1C	fukutin related protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58965274-4	chr11	58964816	58965816	+	927.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_031172, exon 2 of 7)	exon (NM_031172, exon 2 of 7)	1535.0	NM_031172	56631.0	Mm.179733	NM_031172	ENSMUSG00000036964	Trim17	Rnf16|terf	tripartite motif-containing 17	protein-coding	6.5	34.0	5.5	2.0	27.0	9.0
Merged-chr17-42909589-4	chr17	42909083	42910083	+	927.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33159.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	14.0	55.0	47.0	2.5	5.5	3.5
Merged-chr6-125594979-4	chr6	125594486	125595486	+	927.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 10 of 51)	MTD|LTR|ERVL-MaLR	42038.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-31059332-4	chr7	31058858	31059858	+	927.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144556)	promoter-TSS (NM_144556)	-577.0	NM_144556	243914.0	Mm.389870	NM_144556	ENSMUSG00000036560	Lgi4	Lgil3|clp	leucine-rich repeat LGI family, member 4	protein-coding	0.0	1.0	1.0	0.0	3.0	1.0
Merged-chr19-7558928-3	chr19	7558417	7559417	+	927.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362425, intron 2 of 4)	MER97c|DNA|hAT-Tip100	1432.0	NM_001362425	225845.0	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	AdPLA|C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86840066-4	chr11	86839534	86840534	+	927.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32374.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24742261-6	chr17	24741755	24742755	+	927.4398189999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001346668, exon 4 of 4)	3' UTR (NM_001346668, exon 4 of 4)	5662.0	NM_001346668	27361.0	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	25.5	60.5	30.5	27.5	27.0	35.5
Merged-chr19-11999470-4	chr19	11998955	11999955	+	927.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	33611.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	3.5	4.5	0.5	0.0	2.5	1.5
Merged-chr11-94753130-4	chr11	94752621	94753621	+	927.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8061.0	NM_001105561	217122.0	Mm.24063	NM_183153		Gm11545	A430060F13Rik|C86086	predicted gene 11545	protein-coding	7.0	10.5	14.5	18.0	10.5	25.0
Merged-chr5-21367671-4	chr5	21367168	21368168	+	927.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	-5005.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-144956042-3	chr4	144955543	144956543	+	927.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME4b|LINE|L1	62906.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114772886-6	chr5	114772359	114773359	+	927.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_027872)	TTS (NR_027872)	632.0	NM_019834	26431.0	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	79.0	204.5	165.0	45.5	115.5	90.0
Merged-chr15-84979478-4	chr15	84978967	84979967	+	927.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	8504.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-16025247-4	chr3	16024802	16025802	+	927.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	-18970.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69915903-2	chr11	69915403	69916403	+	927.375	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001166596)	TTS (NM_001166596)	1869.0	NM_019726	56310.0	Mm.477738	NM_019726	ENSMUSG00000023170	Gps2	AI505953|GPS-2	G protein pathway suppressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81568806-4	chr15	81568314	81569314	+	927.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17400.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60283313-7	chr2	60282786	60283786	+	927.357117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025422, intron 1 of 4)	intron (NM_025422, intron 1 of 4)	1198.0	NM_025422	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60371745-4	chr10	60371232	60372232	+	927.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001159572, exon 7 of 7)	3' UTR (NM_001159572, exon 7 of 7)	24881.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38336709-3	chr2	38336199	38337199	+	927.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2582.0	NM_001290646	16870.0	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125127993-3	chr6	125127495	125128495	+	927.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346610, intron 37 of 38)	intron (NM_001346610, intron 37 of 38)	-3888.0	NM_138747	110109.0	Mm.29203	NM_138747	ENSMUSG00000038279	Nop2	120kDa|A530002O17|Nol1	NOP2 nucleolar protein	protein-coding	2.5	11.0	5.5	1.0	6.0	9.5
Merged-chr14-40937777-3	chr14	40937287	40938287	+	927.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	10422.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-118645386-2	chr5	118644891	118645891	+	927.3333130000001	f0_c57.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	84672.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	5.0	6.0	8.5	8.0	1.0	2.0
Merged-chr8-72375066-4	chr8	72374570	72375570	+	927.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289859, intron 16 of 21)	PB1D10|SINE|Alu	46404.0	NM_001122832	13859.0	Mm.288894	NM_007944	ENSMUSG00000006276	Eps15l1	9830147J04Rik|AI593686|Eps15-rs|Eps15R	epidermal growth factor receptor pathway substrate 15-like 1	protein-coding	4.0	4.0	5.0	7.5	4.0	2.0
Merged-chr5-23598136-3	chr5	23597635	23598635	+	927.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152854, intron 2 of 14)	MTC|LTR|ERVL-MaLR	18436.0	NM_001359175	20817.0	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	7.5	4.0	3.5	2.0	0.0	0.5
Merged-chr4-95046113-3	chr4	95045624	95046624	+	927.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6098.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14816406-3	chr8	14815894	14816894	+	927.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 9 of 15)	T-rich|Low_complexity|Low_complexity	-72142.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.0	5.0	6.0	0.0	6.0	7.0
Merged-chr11-33115018-3	chr11	33114516	33115516	+	927.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32384.0	NM_008005	14172.0	Mm.339812	NM_008005	ENSMUSG00000057967	Fgf18	D130055P09Rik|FGF-18	fibroblast growth factor 18	protein-coding	0.0	1.0	0.0	0.0	5.0	0.0
Merged-chr12-117379268-3	chr12	117378692	117379692	+	927.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42180.0	NR_044987	432713.0	Mm.459210	NR_044987	ENSMUSG00000101930	Gm5441	-	predicted gene 5441	ncRNA	2.5	10.5	2.5	5.0	7.0	9.0
Merged-chr9-63132280-3	chr9	63131787	63132787	+	927.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14693.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-13756600-3	chr4	13756108	13757108	+	927.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111027, intron 1 of 11)	intron (NM_001111027, intron 1 of 11)	5311.0	NM_001111027	12395.0	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6274434-3	chr19	6273926	6274926	+	927.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2470.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130159986-4	chr5	130159427	130160427	+	927.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11892.0	NM_001199059	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-68859058-3	chr9	68858566	68859566	+	927.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013646, intron 1 of 10)	intron (NM_013646, intron 1 of 10)	93720.0	NR_033299	320440.0	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71020741-3	chr17	71020235	71021235	+	927.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083934, intron 1 of 36)	intron (NM_001083934, intron 1 of 36)	1178.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	9.5	13.5	14.0	7.0	23.0	17.5
Merged-chr11-119084803-3	chr11	119084344	119085344	+	927.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007625, intron 2 of 4)	intron (NM_007625, intron 2 of 4)	1393.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	24.5	68.5	56.5	5.0	10.0	6.0
Merged-chr18-53743865-4	chr18	53743375	53744375	+	927.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178686, intron 2 of 20)	intron (NM_178686, intron 2 of 20)	672.0	NM_178686	225523.0	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding	50.5	53.0	40.0	34.5	60.0	56.5
Merged-chr15-59645878-2	chr15	59645378	59646378	+	927.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33A|LTR|ERVL	-2776.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75174399-2	chr11	75173899	75174899	+	927.3000490000001	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029794)	TTS (NR_029794)	717.0	NR_029546	387150.0		NR_029546	ENSMUSG00000065537	Mir132	Mirn132|mir-132|mmu-mir-132	microRNA 132	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79824577-4	chr10	79824058	79825058	+	927.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030218, intron 1 of 4)	intron (NM_030218, intron 1 of 4)	3537.0	NM_030218	78906.0	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124611415-4	chr2	124610916	124611916	+	927.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	1120.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138066509-4	chr4	138065988	138066988	+	927.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256195, intron 4 of 34)	intron (NM_001256195, intron 4 of 34)	68663.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	134.0	328.5	137.5	75.0	143.5	89.5
Merged-chr11-20915269-4	chr11	20914750	20915750	+	927.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84142.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	4.0	14.5	11.0	2.0	9.5	5.5
Merged-chr14-93654007-3	chr14	93653554	93654554	+	927.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081377, intron 2 of 4)	LTR50|LTR|ERVL	236615.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.0	0.0	0.0	0.5	1.0	7.5
Merged-chr16-76407067-3	chr16	76406565	76407565	+	927.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33238.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-147010850-4	chr1	147010344	147011344	+	927.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	513157.0	NM_001145807	215378.0	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88795432-3	chr10	88794937	88795937	+	927.255554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175158, exon 22 of 62)	exon (NM_175158, exon 22 of 62)	31377.0	NM_175158	70683.0	Mm.29631	NM_175158	ENSMUSG00000004356	Utp20	3830408P06Rik|AA617408|Drim|mDRIM|mDRIN	UTP20 small subunit processome component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-144776091-2	chr7	144775591	144776591	+	927.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37499.0	NM_001242349	101772.0	Mm.26700	NM_178642	ENSMUSG00000031075	Ano1	Tmem16a	anoctamin 1, calcium activated chloride channel	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-59610896-4	chr16	59610405	59611405	+	927.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-26040.0	NR_040564	75145.0	Mm.399348	NR_040564		4930547E14Rik	-	RIKEN cDNA 4930547E14 gene	ncRNA	0.0	5.0	2.5	4.5	1.0	4.5
Merged-chr17-56668972-4	chr17	56668515	56669515	+	927.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4210.0	NM_001252466	71810.0	Mm.29608	NM_027933	ENSMUSG00000002372	Ranbp3	2610024N24Rik|AA408221	RAN binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61040042-4	chr18	61039530	61040530	+	927.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3831.0	NM_009880	12590.0	Mm.144448	NM_009880	ENSMUSG00000024619	Cdx1	Cdx|Cdx-1	caudal type homeobox 1	protein-coding	0.0	0.0	1.0	1.0	7.0	2.0
Merged-chr13-20800815-4	chr13	20800350	20801350	+	927.241699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012054, intron 1 of 20)	MTB_Mm|LTR|ERVL-MaLR	6737.0	NM_012054	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	8.5	21.5	19.0	20.0	27.0	6.5
Merged-chr9-35535261-4	chr9	35534761	35535761	+	927.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	23209.0	NM_013932	30959.0	Mm.291723	NM_013932	ENSMUSG00000032101	Ddx25	AW047046|GRTH	DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-23177503-8	chr10	23176946	23177946	+	927.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010167, intron 3 of 18)	intron (NM_010167, intron 3 of 18)	172444.0	NM_001347372	14051.0	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	9.0	20.0	24.0	1.0	15.5	13.5
Merged-chr7-118448762-4	chr7	118448248	118449248	+	927.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362179)	promoter-TSS (NM_001362179)	-526.0	NM_001362179	110058.0	Mm.156558	NM_138649	ENSMUSG00000058420	Syt17	Bk|sytXVII	synaptotagmin XVII	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155751502-4	chr2	155750914	155751914	+	927.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011171, exon 1 of 4)	exon (NM_011171, exon 1 of 4)	197.0	NM_011171	19124.0	Mm.3243	NM_011171	ENSMUSG00000027611	Procr	AI325044|Ccca|Ccd41|Epcr	protein C receptor, endothelial	protein-coding	8.5	41.5	36.5	24.0	29.5	29.5
Merged-chr2-38545258-4	chr2	38544765	38545765	+	927.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159631, intron 1 of 9)	intron (NM_001159631, intron 1 of 9)	33389.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107810231-4	chr13	107809732	107810732	+	927.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	L1MD3|LINE|L1	79832.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3290988-3	chr11	3290519	3291519	+	927.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001253691, exon 1 of 5)	exon (NM_001253691, exon 1 of 5)	562.0	NM_019574	56218.0	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81171483-4	chr13	81170979	81171979	+	927.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 86 of 89)	intron (NM_054053, intron 86 of 89)	207405.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120098041-4	chr2	120097530	120098530	+	927.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 4 of 5)	intron (NM_133838, intron 4 of 5)	56545.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	5.0	1.0	13.0	2.5	0.5	0.0
Merged-chr5-66363505-4	chr5	66363031	66364031	+	927.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310626, intron 9 of 15)	intron (NM_001310626, intron 9 of 15)	-25866.0	NM_001201416	11787.0	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-115251764-4	chr7	115251265	115252265	+	927.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	300491.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	3.0	5.0	8.0	0.5	3.5	3.0
Merged-chr15-6360349-3	chr15	6359856	6360856	+	927.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	-26392.0	NM_023118	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80033734-3	chr10	80033245	80034245	+	927.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	5914.0	NM_025554	66420.0	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-9166158-2	chr9	9165658	9166658	+	927.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_027823, intron 2 of 22)	intron (NM_027823, intron 2 of 22)	-70130.0	NR_045754	100579151.0	Mm.412450	NR_045754	ENSMUSG00000085253	Gm16833	-	predicted gene, 16833	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121595495-2	chr3	121594995	121595995	+	927.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47990.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95296721-2	chr3	95296221	95297221	+	927.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_199475)	TTS (NM_199475)	10083.0	NM_001085383	71790.0	Mm.218844	NM_023628	ENSMUSG00000015702	Anxa9	1110003P15Rik|2310069F17Rik	annexin A9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46388429-4	chr17	46387923	46388923	+	927.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021346, intron 2 of 7)	intron (NM_021346, intron 2 of 7)	4657.0	NM_021346	57908.0	Mm.439916	NM_021346	ENSMUSG00000015597	Zfp318	2610034E08Rik|D530032D06Rik|TZF|Znf318	zinc finger protein 318	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-44938161-3	chr8	44937686	44938686	+	927.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12022.0	NM_001081286	14107.0	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT atypical cadherin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41386385-9	chr19	41385869	41386869	+	927.1333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1299.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	20.5	93.0	49.5	30.5	83.0	54.5
Merged-chr12-113014517-8	chr12	113014038	113015038	+	927.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291444)	promoter-TSS (NM_001291444)	30.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103146592-4	chr11	103146112	103147112	+	927.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13253.0	NM_027658	71059.0	Mm.273871	NM_027658	ENSMUSG00000043372	Hexim2	4933402L21Rik	hexamethylene bis-acetamide inducible 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73338632-4	chr2	73338136	73339136	+	927.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029022)	TTS (NM_029022)	25984.0	NM_001355711	74616.0	Mm.247457	NM_029022	ENSMUSG00000008226	Scrn3	4833415E20Rik|AI427019|AV002033|Ses3	secernin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-41313605-4	chr12	41313118	41314118	+	927.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	172439.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90777780-4	chr5	90777270	90778270	+	927.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5335.0	NM_019932	56744.0	Mm.332490	NM_019932	ENSMUSG00000029373	Pf4	Cxcl4|Scyb4	platelet factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-65141123-3	chr6	65140634	65141634	+	927.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019455, intron 1 of 5)	intron (NM_019455, intron 1 of 5)	3596.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21018788-2	chr9	21018288	21019288	+	927.111084	f1_balb.idr|f1_c57bl6.idr	intron (NM_010493, intron 1 of 6)	intron (NM_010493, intron 1 of 6)	2848.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191443760-3	chr1	191443269	191444269	+	927.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151615, intron 3 of 5)	intron (NR_151615, intron 3 of 5)	21279.0	NR_151615	102634668.0		NR_151615		Gm32200	-	predicted gene, 32200	ncRNA	3.5	9.0	10.0	1.0	14.5	12.5
Merged-chr7-95791062-4	chr7	95790568	95791568	+	927.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-380176.0	NM_001310762	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96239133-4	chr3	96238620	96239620	+	927.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178216)	promoter-TSS (NM_178216)	7.0	NM_054045	97114.0	Mm.358797	NM_054045	ENSMUSG00000081058	Hist2h3c2	H3-614|H3.2-614|Hist2h3c2-ps|Hist2h3ca1|M32461	histone cluster 2, H3c2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123153042-4	chr5	123152541	123153541	+	927.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040398, intron 7 of 16)	MER3|DNA|hAT-Charlie	10848.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-79846758-4	chr7	79846264	79847264	+	927.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008486, intron 1 of 20)	intron (NM_008486, intron 1 of 20)	1446.0	NM_008486	16790.0	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40245673-4	chr12	40245187	40246187	+	927.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22323.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95825318-4	chr16	95824801	95825801	+	927.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73412.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127849290-4	chr7	127848805	127849805	+	927.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009294)	TTS (NM_009294)	7497.0	NM_009294	20909.0	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	30.0	90.5	56.0	54.5	98.0	76.5
Merged-chr18-12154302-4	chr18	12153814	12154814	+	927.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024182, intron 12 of 12)	intron (NM_024182, intron 12 of 12)	-14416.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29200052-4	chr2	29199570	29200570	+	927.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305805, intron 4 of 7)	intron (NM_001305805, intron 4 of 7)	48029.0	NM_001305805	171171.0	Mm.442448	NM_133500	ENSMUSG00000035513	Ntng2	2610016D08Rik|Lmnt2	netrin G2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-14159972-4	chr16	14159481	14160481	+	927.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081154)	promoter-TSS (NM_001081154)	355.0	NR_030252	723916.0		NR_030252	ENSMUSG00000070074	Mir484	Mirn484|mir-484|mmu-mir-484	microRNA 484	ncRNA	27.0	57.5	42.0	20.0	56.0	51.5
Merged-chr16-23492979-4	chr16	23492474	23493474	+	927.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359083, intron 4 of 10)	MIR3|SINE|MIR	27841.0	NM_008555	17174.0	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43322263-4	chr1	43321746	43322746	+	927.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-123505.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102173886-3	chr12	102173401	102174401	+	927.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172152, intron 2 of 16)	ORR1E|LTR|ERVL-MaLR	45174.0	NM_172152	238384.0	Mm.312448	NM_172152	ENSMUSG00000041771	Slc24a4	A930002M03Rik|AW492432|NCKX4	solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	protein-coding	1.5	13.0	2.5	6.5	16.5	24.0
Merged-chr13-106945720-4	chr13	106945220	106946220	+	927.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1409.0	NM_025447	66254.0	Mm.9563	NM_025447	ENSMUSG00000021692	Dimt1	1500031M22Rik|AV111347|Dimt1l	DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80501101-4	chr7	80500597	80501597	+	927.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042527, intron 7 of 21)	intron (NM_001042527, intron 7 of 21)	33901.0	NM_007550	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	6.5	17.0	13.0	0.0	12.5	14.0
Merged-chr1-153518758-4	chr1	153518237	153519237	+	927.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028749, intron 7 of 11)	B3|SINE|B2	30977.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-51362786-4	chr6	51362286	51363286	+	927.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16924.0	NR_110455	625167.0	Mm.389772	NR_110455	ENSMUSG00000107660	Gm6559	EG625167	predicted gene 6559	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157407786-4	chr2	157407275	157408275	+	927.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16518.0	NM_009271	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0.0	2.0	0.0	0.0	21.0	1.0
Merged-chr11-58225577-2	chr11	58225077	58226077	+	927.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10600.0	NM_019440	54396.0	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	9.0	20.0	12.0	3.5	26.5	14.0
Merged-chr14-73444207-2	chr14	73443707	73444707	+	927.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58918.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131079092-4	chr2	131078601	131079601	+	927.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011426, intron 8 of 20)	intron (NM_011426, intron 8 of 20)	7664.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	1.0	1.0	6.0	0.0	2.5	8.0
Merged-chr4-117121636-2	chr4	117121137	117122137	+	927.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_024078, intron 4 of 6)	intron (NR_024078, intron 4 of 6)	4088.0	NR_024078	78611.0	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	33.0	72.5	59.5	71.5	96.0	111.5
Merged-chr18-60626713-2	chr18	60626213	60627213	+	927.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-2408.0	NM_177340	104027.0	Mm.252321	NM_177340	ENSMUSG00000043079	Synpo	9030217H17Rik|9130229N11|9330140I15Rik|AW046661	synaptopodin	protein-coding	2.0	5.5	2.5	0.0	0.5	0.0
Merged-chr16-4878313-10	chr16	4877858	4878858	+	927.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145359, intron 1 of 2)	intron (NM_145359, intron 1 of 2)	1493.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47893161-1	chr9	47892661	47893661	+	927.0	f0_balb.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	-74953.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	0.0	1.0	0.0	0.0	0.0	2.0
Merged-chr11-101058083-2	chr11	101057583	101058583	+	927.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243049, intron 20 of 20)	intron (NM_001243049, intron 20 of 20)	-12011.0	NM_013792	27419.0	Mm.95452	NM_013792	ENSMUSG00000001751	Naglu	-	alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122622594-1	chr3	122622094	122623094	+	927.0	f1_balb.idr	Intergenic	RSINE1|SINE|B4	-2880.0	NM_001114665	214459.0	Mm.209491	NM_153118	ENSMUSG00000039735	Fnbp1l	2610318I01Rik|AW548221|TOCA1|toca-1	formin binding protein 1-like	protein-coding	29.5	0.0	9.0	0.0	1.0	2.0
Merged-chr8-84211574-2	chr8	84211171	84212171	+	927.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172503, exon 14 of 14)	3' UTR (NM_172503, exon 14 of 14)	-2764.0	NR_037294	100526528.0		NR_037294	ENSMUSG00000105458	Mir3074-2	mir-3074-2|mmu-mir-3074-2	microRNA 3074-2	ncRNA	0.0	1.0	8.5	1.0	2.0	1.0
Merged-chr6-37442961-2	chr6	37442461	37443461	+	927.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178661)	promoter-TSS (NM_178661)	-813.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98972555-4	chr10	98972057	98973057	+	927.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 2 of 21)	intron (NM_001359507, intron 2 of 21)	57405.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23744510-2	chr13	23744058	23745058	+	927.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175653)	TTS (NM_175653)	963.0	NM_175653	319148.0	Mm.262517	NM_175653	ENSMUSG00000069310	Hist1h3c	H3-143	histone cluster 1, H3c	protein-coding	2.5	2.5	1.0	6.0	5.5	0.0
Merged-chr10-121477611-3	chr10	121477110	121478110	+	927.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1360.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	41.0	86.0	48.0	87.0	135.5	120.5
Merged-chr8-94181982-3	chr8	94181576	94182576	+	927.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	2987.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99102703-4	chr7	99102222	99103222	+	927.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 3 of 14)	RMER17C|LTR|ERVK	38422.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	160.0	299.5	216.5	150.0	398.0	248.5
Merged-chr18-84678897-2	chr18	84678397	84679397	+	927.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023149, intron 3 of 11)	intron (NM_023149, intron 3 of 11)	3162.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-127980231-2	chr1	127979731	127980731	+	927.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 12 of 20)	intron (NM_001285945, intron 12 of 20)	111458.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-107447409-2	chr1	107446909	107447909	+	927.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027548, intron 5 of 7)	intron (NM_027548, intron 5 of 7)	24720.0	NM_027548	116872.0	Mm.66015	NM_027548	ENSMUSG00000067001	Serpinb7	4631416M05Rik|megsin|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 7	protein-coding	0.0	11.0	5.5	1.0	14.5	2.0
Merged-chr13-41466386-4	chr13	41465891	41466891	+	927.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	20969.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160361319-2	chr2	160360819	160361819	+	927.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5746.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	12.0	55.0	11.5	18.5	13.5	17.0
Merged-chr19-5479926-2	chr19	5479426	5480426	+	927.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021474, intron 7 of 10)	intron (NM_021474, intron 7 of 10)	5191.0	NM_001164352	58859.0	Mm.276367	NM_021474	ENSMUSG00000024909	Efemp2	0610011K11Rik|Fbln4|MBP1	epidermal growth factor-containing fibulin-like extracellular matrix protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180409697-2	chr1	180409197	180410197	+	927.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	73807.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-85381840-2	chr6	85381340	85382340	+	927.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7206.0	NM_001003955	52055.0	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90581368-5	chr2	90580921	90581921	+	927.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008982)	promoter-TSS (NM_008982)	-774.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120954545-2	chr4	120954056	120955056	+	927.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-2855.0	NM_001005788	381549.0	Mm.331840	NM_001005788	ENSMUSG00000064141	Zfp69	Gm1029|Krab2|Zfp63	zinc finger protein 69	protein-coding	9.5	8.0	3.0	13.0	15.0	5.5
Merged-chr15-80800915-3	chr15	80800422	80801422	+	927.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177124, intron 1 of 21)	intron (NM_177124, intron 1 of 21)	2312.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73806552-2	chr13	73806052	73807052	+	927.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 20 of 24)	intron (NM_001360694, intron 20 of 24)	41079.0	NM_028186	72293.0	Mm.45506	NM_028186	ENSMUSG00000021567	Nkd2	2210403L10Rik|AW212591|mNkd2	naked cuticle 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34879686-4	chr17	34879191	34880191	+	926.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013484, intron 3 of 17)	intron (NM_013484, intron 3 of 17)	2409.0	NM_013484	12263.0	Mm.283217	NM_013484	ENSMUSG00000024371	C2	-	complement component 2 (within H-2S)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5728343-4	chr17	5727837	5728837	+	926.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 7 of 8)	MTC|LTR|ERVL-MaLR	-70320.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49381422-4	chr13	49380923	49381923	+	926.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039179, intron 6 of 6)	intron (NM_001039179, intron 6 of 6)	-39800.0	NR_075085	75678.0	Mm.390586	NM_199056	ENSMUSG00000021385	Ippk	1810043M15Rik|InsP6	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80674849-5	chr10	80674377	80675377	+	926.957153	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021462, intron 2 of 13)	intron (NM_021462, intron 2 of 13)	1416.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-147023808-4	chr2	147023315	147024315	+	926.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356402, intron 1 of 28)	intron (NM_001356402, intron 1 of 28)	10816.0	NM_001356402	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	32.0	36.0	25.5	12.0	48.5	31.0
Merged-chr10-80985759-4	chr10	80985248	80986248	+	926.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038655, intron 2 of 3)	CpG	15617.0	NM_001038655	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-163899809-4	chr1	163899300	163900300	+	926.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305643, intron 19 of 19)	intron (NM_001305643, intron 19 of 19)	-29300.0	NM_001286002	240880.0	Mm.389213	NM_028776	ENSMUSG00000026584	Scyl3	1200016D23Rik|6030457O16|AW214499|Pace1	SCY1-like 3 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23488905-4	chr13	23488416	23489416	+	926.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175938)	promoter-TSS (NM_175938)	-59.0	NM_001289614	238555.0	Mm.129668	NM_175938	ENSMUSG00000053216	Btn2a2	Btn2|D030063K05	butyrophilin, subfamily 2, member A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111455097-4	chr10	111454600	111455600	+	926.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-18127.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-49734614-4	chr2	49734115	49735115	+	926.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008449, intron 15 of 25)	intron (NM_008449, intron 15 of 25)	-53071.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81191534-4	chr10	81191038	81192038	+	926.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190473, intron 6 of 8)	MTC|LTR|ERVL-MaLR	-3153.0	NR_015477	69678.0	Mm.81562	NR_015477		Atcayos	2310050B05Rik	ataxia, cerebellar, Cayman type, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57439713-4	chr9	57439208	57440208	+	926.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357913)	promoter-TSS (NM_001357913)	28.0	NM_001357913	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-15395527-4	chr9	15395016	15396016	+	926.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-37728.0	NM_176976	319675.0	Mm.218317	NM_176976	ENSMUSG00000046111	Cep295	5830418K08Rik|5832426L23Rik|Gm1131|Kiaa1731	centrosomal protein 295	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-88770666-4	chr18	88770173	88771173	+	926.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	123534.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71442236-4	chr6	71441758	71442758	+	926.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1621.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44635448-4	chr10	44635016	44636016	+	926.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-176768.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51048075-3	chr14	51047622	51048622	+	926.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2041.0	NM_001011877	497113.0	Mm.379741	NM_001011877	ENSMUSG00000059648	Rnase11	Raj1	ribonuclease, RNase A family, 11 (non-active)	protein-coding	2.5	11.0	1.5	2.5	0.5	1.0
Merged-chr5-137785261-3	chr5	137784748	137785748	+	926.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144913, exon 1 of 4)	exon (NM_144913, exon 1 of 4)	1453.0	NM_144913	231803.0	Mm.61193	NM_144913	ENSMUSG00000029726	Mepce	Bcdin3|D5Wsu46e	methylphosphate capping enzyme	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-26751054-3	chr10	26750563	26751563	+	926.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21449.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	3.5	0.0	0.0	1.5	0.0	2.0
Merged-chr3-152192335-10	chr3	152191847	152192847	+	926.8800050000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356364, intron 1 of 2)	intron (NM_001356364, intron 1 of 2)	1498.0	NM_025926	67035.0	Mm.46746	NM_025926	ENSMUSG00000028035	Dnajb4	1700029A20Rik|2010306G19Rik|5730460G06Rik	DnaJ heat shock protein family (Hsp40) member B4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-101740699-4	chr12	101740190	101741190	+	926.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-22167.0	NM_001082976	74413.0	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding	23.5	17.5	14.5	5.5	20.5	18.0
Merged-chr15-77846459-4	chr15	77845963	77846963	+	926.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-4288.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32494633-4	chr2	32494140	32495140	+	926.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-40719.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24435518-4	chr16	24435007	24436007	+	926.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 1 of 12)	intron (NM_178665, intron 1 of 12)	-12584.0	NM_001145952	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61046528-4	chr14	61046033	61047033	+	926.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013869, exon 1 of 10)	5' UTR (NM_013869, exon 1 of 10)	322.0	NM_013869	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	0.0	5.0	1.0	4.0	0.0	2.0
Merged-chr4-101328828-4	chr4	101328334	101329334	+	926.841675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18193.0	NR_029537	387143.0		NR_029537	ENSMUSG00000065451	Mir101a	Mirn101|Mirn101a|miR-101|mir-101a	microRNA 101a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7274670-2	chr19	7274170	7275170	+	926.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007928)	TTS (NM_007928)	6391.0	NM_001320554	104383.0	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21017762-3	chr9	21017242	21018242	+	926.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010493, intron 1 of 6)	B1F2|SINE|Alu	1802.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57589963-4	chr9	57589444	57590444	+	926.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027895, intron 1 of 15)	intron (NM_027895, intron 1 of 15)	492.0	NM_027895	71742.0	Mm.155877	NM_027895	ENSMUSG00000032308	Ulk3	1200015E14Rik	unc-51-like kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-67269781-3	chr13	67269256	67270256	+	926.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155551)	promoter-TSS (NR_155551)	-688.0	NM_001001152	238690.0	Mm.306358	NM_001001152	ENSMUSG00000055480	Zfp458	BC062958|Gm33446|Rslcan-7|Znf728|mszf59-2	zinc finger protein 458	protein-coding	8.0	52.0	36.0	4.5	21.5	14.5
Merged-chr3-122247344-3	chr3	122246830	122247830	+	926.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008129, intron 1 of 6)	intron (NM_008129, intron 1 of 6)	1773.0	NM_008129	14630.0	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73411115-4	chr14	73410606	73411606	+	926.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25817.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-164586737-4	chr1	164586248	164587248	+	926.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83441.0	NR_151593	102635083.0	Mm.98705	NR_151593	ENSMUSG00000097281	Gm26685	-	predicted gene, 26685	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44448258-4	chr10	44447764	44448764	+	926.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007548, intron 3 of 6)	intron (NM_007548, intron 3 of 6)	10484.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65671160-3	chr18	65670663	65671663	+	926.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361052, intron 6 of 8)	intron (NM_001361052, intron 6 of 8)	-27105.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	14.5	3.0	8.0	25.5	22.5	32.5
Merged-chr7-4087720-4	chr7	4087223	4088223	+	926.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033568, intron 6 of 8)	intron (NR_033568, intron 6 of 8)	-24519.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-57581815-4	chr18	57581321	57582321	+	926.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029290, intron 3 of 6)	intron (NM_029290, intron 3 of 6)	-29424.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43048608-5	chr5	43048078	43049078	+	926.7800289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-184885.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-56689425-3	chr14	56688896	56689896	+	926.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153396, intron 9 of 12)	intron (NR_153396, intron 9 of 12)	11604.0	NR_046209	100503823.0	Mm.474486	NR_046209		Gm16973	-	predicted gene, 16973	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3238774-6	chr12	3238248	3239248	+	926.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015551, intron 4 of 6)	intron (NR_015551, intron 4 of 6)	2957.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110908011-3	chr12	110907514	110908514	+	926.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175336, intron 3 of 20)	intron (NM_175336, intron 3 of 20)	18750.0	NM_001081057	104859.0	Mm.35583	NM_175336	ENSMUSG00000021275	Tecpr2	4930573I19Rik|AI604920|mKIAA0297	tectonin beta-propeller repeat containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94105746-3	chr10	94105369	94106369	+	926.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 7 of 20)	intron (NM_053072, intron 7 of 20)	-42062.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	14.0	37.0	24.5	0.5	11.0	10.0
Merged-chr11-119955658-4	chr11	119955145	119956145	+	926.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037754, intron 1 of 13)	intron (NM_001037754, intron 1 of 13)	12553.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94638790-4	chr10	94638290	94639290	+	926.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49823.0	NR_015524	67723.0	Mm.116284	NR_015524		Cep83os	4932415G12Rik|Ccdc41os1	centrosomal protein 83, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75704635-4	chr7	75704127	75705127	+	926.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 17 of 36)	intron (NM_029332, intron 17 of 36)	-143711.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101296977-4	chr4	101296492	101297492	+	926.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-31710.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	5.5	7.0	1.5	9.5	3.0	4.5
Merged-chr18-9732209-4	chr18	9731709	9732709	+	926.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	24561.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	52.0	62.5	81.5	75.5	72.5	97.0
Merged-chr2-3349136-4	chr2	3348637	3349637	+	926.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145921, intron 3 of 7)	intron (NM_145921, intron 3 of 7)	12969.0	NM_030063	78245.0	Mm.99733	NM_030063	ENSMUSG00000026644	Acbd7	9230116B18Rik	acyl-Coenzyme A binding domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92136902-3	chr5	92136390	92137390	+	926.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	835.0	NM_001359197	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123027738-4	chr5	123027260	123028260	+	926.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175423, intron 1 of 1)	intron (NM_175423, intron 1 of 1)	12686.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120237402-4	chr11	120236897	120237897	+	926.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198423, intron 2 of 27)	CpG-2934	4450.0	NM_198423	268515.0	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-14533664-3	chr7	14533171	14534171	+	926.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045120, intron 12 of 12)	intron (NR_045120, intron 12 of 12)	28500.0	NM_001244031	627280.0	Mm.372763	NM_001039146	ENSMUSG00000100586	Vmn1r90	B430211C08Rik	vomeronasal 1 receptor 90	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr3-16004075-3	chr3	16003570	16004570	+	926.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081687, intron 1 of 3)	intron (NM_001081687, intron 1 of 3)	2262.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	3.5	15.0	10.5	0.5	4.0	9.5
Merged-chr7-75596247-4	chr7	75595744	75596744	+	926.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 5 of 36)	intron (NM_029332, intron 5 of 36)	140710.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75829646-4	chr14	75829204	75830204	+	926.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15260.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100465678-6	chr7	100465171	100466171	+	926.7037349999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 32 of 32)	intron (NM_001017985, intron 32 of 32)	-7320.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	5.5	28.0	14.5	14.5	47.0	15.0
Merged-chr11-82820909-4	chr11	82820424	82821424	+	926.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007465, intron 1 of 6)	intron (NM_001007465, intron 1 of 6)	8119.0	NM_026097	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28593592-4	chr7	28593066	28594066	+	926.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027470, intron 1 of 9)	intron (NM_027470, intron 1 of 9)	4618.0	NM_027470	70584.0	Mm.21876	NM_027470	ENSMUSG00000030602	Pak4	5730488L07Rik|AW555722|mKIAA1142	p21 (RAC1) activated kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6795224-3	chr17	6794778	6795778	+	926.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-12498.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78574442-4	chr15	78573930	78574930	+	926.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_155437)	TTS (NR_155437)	-1647.0	NM_009008	19354.0	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	Rac family small GTPase 2	protein-coding	3.5	10.0	12.5	3.5	10.0	12.5
Merged-chr17-88257331-4	chr17	88256837	88257837	+	926.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131825.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-68695972-3	chr14	68695484	68696484	+	926.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40142.0	NM_183366	13522.0	Mm.117450	NM_010082	ENSMUSG00000014725	Adam28	C130072N01Rik|D430033C21Rik|Dtgn1|MDC-L|MDCL|TECADAM|eMDCII	a disintegrin and metallopeptidase domain 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100002057-3	chr13	100001580	100002580	+	926.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030026, intron 1 of 16)	intron (NM_030026, intron 1 of 16)	13559.0	NM_030026	78038.0	Mm.137327	NM_030026	ENSMUSG00000021646	Mccc2	4930552N12Rik|MCCB	methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9342256-3	chr3	9341752	9342752	+	926.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAAA)n|Simple_repeat|Simple_repeat	-60826.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-144267751-3	chr5	144267228	144268228	+	926.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025833, intron 12 of 13)	intron (NM_025833, intron 12 of 13)	-9333.0	NR_040432	100504231.0	Mm.441035	NR_040432	ENSMUSG00000086894	Gm15708	-	predicted gene 15708	ncRNA	1.5	0.0	0.0	3.5	0.0	1.0
Merged-chr18-80410506-3	chr18	80410001	80411001	+	926.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 12 of 12)	intron (NM_026295, intron 12 of 12)	-46247.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	2.0	2.0	9.0	8.0	4.5	3.0
Merged-chr9-65534740-3	chr9	65534246	65535246	+	926.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45341.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-9745085-4	chr1	9744583	9745583	+	926.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173443, intron 1 of 2)	intron (NM_173443, intron 1 of 2)	-2565.0	NR_040462	73331.0	Mm.460470	NR_040462		1700034P13Rik	-	RIKEN cDNA 1700034P13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91052349-3	chr1	91051862	91052862	+	926.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-1082.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135318190-4	chr4	135317691	135318691	+	926.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35023.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20825102-4	chr14	20824603	20825603	+	926.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-11559.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	75.0	289.5	139.5	90.5	208.5	127.0
Merged-chr3-89729934-3	chr3	89729474	89730474	+	926.644409	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019655)	promoter-TSS (NM_019655)	-744.0	NM_001146296	56417.0	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|DRADA|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155443536-4	chr2	155443100	155444100	+	926.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2817.0	NM_019825	56406.0	Mm.27592	NM_019825	ENSMUSG00000038369	Ncoa6	AIB3|ASC-2|ASC2|NRC|Ncoa7|PRIP|RAP250|mKIAA0181	nuclear receptor coactivator 6	protein-coding	55.0	78.5	57.5	57.5	81.0	47.0
Merged-chr17-69197892-4	chr17	69197386	69198386	+	926.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	38530.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-14706642-4	chr14	14706046	14707046	+	926.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360513, intron 1 of 25)	intron (NM_001360513, intron 1 of 25)	3521.0	NM_001360509	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	0.0	6.0	3.0	5.5	15.0	16.5
Merged-chr8-36532881-4	chr8	36532336	36533336	+	926.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43645.0	NM_176952	319582.0	Mm.180924	NM_176952	ENSMUSG00000039620	6430573F11Rik	Kiaa1456|TRM9L|Trmt9b	RIKEN cDNA 6430573F11 gene	protein-coding	2.0	18.5	5.0	1.5	14.0	10.0
Merged-chr1-191074029-2	chr1	191073529	191074529	+	926.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_198654, intron 4 of 5)	intron (NM_198654, intron 4 of 5)	11008.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	122.5	307.5	183.0	86.0	355.0	179.5
Merged-chr4-135018230-4	chr4	135017721	135018721	+	926.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87241.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170950817-4	chr1	170950327	170951327	+	926.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-23244.0	NM_001160215	98752.0	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124896922-4	chr8	124896435	124897435	+	926.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111141)	promoter-TSS (NM_001111141)	770.0	NM_198103	102058.0	Mm.347360	NM_198103	ENSMUSG00000074030	Exoc8	AI414418|EXO84|Exo84p|R74783|SEC84	exocyst complex component 8	protein-coding	0.0	1.0	1.5	2.5	0.0	0.0
Merged-chr3-22024386-4	chr3	22023875	22024875	+	926.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52277.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-119917125-4	chr1	119916606	119917606	+	926.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3938.0	NM_175106	66343.0	Mm.49942	NM_175106	ENSMUSG00000036975	Tmem177	2300008B03Rik	transmembrane protein 177	protein-coding	0.0	12.5	0.0	0.0	5.5	0.0
Merged-chr16-89707673-4	chr16	89707179	89708179	+	926.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110673.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-37877864-4	chr18	37877351	37878351	+	926.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007858, intron 16 of 26)	intron (NM_007858, intron 16 of 26)	-23191.0	NR_105945	102465592.0		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	1.5	0.0	3.5	0.0	0.0	1.0
Merged-chr13-43549497-4	chr13	43548913	43549913	+	926.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081059, intron 5 of 8)	intron (NM_001081059, intron 5 of 8)	10778.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	34.5	75.5	51.5	21.5	82.5	65.5
Merged-chr18-65328841-4	chr18	65328361	65329361	+	926.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037294, intron 4 of 12)	MER5A1|DNA|hAT-Charlie	65027.0	NM_001037294	225638.0	Mm.296528	NM_001037294	ENSMUSG00000032845	Alpk2	Gm549|Hak	alpha-kinase 2	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr19-28612459-3	chr19	28611958	28612958	+	926.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175459, intron 2 of 10)	intron (NM_175459, intron 2 of 10)	-65766.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-53449542-3	chr8	53449057	53450057	+	926.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62145.0	NM_001205054	11593.0	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90395166-4	chr2	90394666	90395666	+	926.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F3|LINE|L1	-5474.0	NM_146263	258330.0	Mm.330392	NM_146263	ENSMUSG00000082980	Olfr1274-ps	GA_x5J8B7W2BV0-3116-4045|MOR228-4|MOR228-5|Olfr1274	olfactory receptor 1274, pseudogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3671375-4	chr11	3670879	3671879	+	926.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198162, intron 5 of 25)	intron (NM_198162, intron 5 of 25)	12679.0	NM_198162	74522.0	Mm.139127	NM_198162	ENSMUSG00000034543	Morc2a	8430403M08Rik|Zcwcc1	microrchidia 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80245067-4	chr10	80244547	80245547	+	926.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023431)	TTS (NM_023431)	-4405.0	NM_029272	75406.0	Mm.28712	NM_029272	ENSMUSG00000020153	Ndufs7	1010001M04Rik	NADH dehydrogenase (ubiquinone) Fe-S protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-47221685-4	chr11	47221192	47222192	+	926.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 2 of 7)	MTE2b|LTR|ERVL-MaLR	157610.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5874428-2	chr19	5873928	5874928	+	926.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026169, intron 2 of 10)	MIR3|SINE|MIR	780.0	NM_026169	67457.0	Mm.202092	NM_026169	ENSMUSG00000024816	Frmd8	1200004M23Rik|2310035N23Rik|4931429L16Rik|AU018809	FERM domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111528309-2	chr8	111527809	111528809	+	926.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6202.0	NM_176923	319481.0	Mm.247294	NM_176923	ENSMUSG00000031959	Wdr59	5430401O09Rik|Cdw12	WD repeat domain 59	protein-coding	0.0	0.0	1.0	0.0	1.0	3.0
Merged-chr7-127810711-2	chr7	127810211	127811211	+	926.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_024414, exon 7 of 10)	exon (NM_024414, exon 7 of 10)	10102.0	NM_001040684	101502.0	Mm.157103	NM_133943	ENSMUSG00000042289	Hsd3b7	AI195443|BB098564	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-38084354-2	chr7	38083848	38084848	+	926.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	23142.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	4.5	12.5	4.5	4.5	17.0	12.5
Merged-chr9-65566726-2	chr9	65566226	65567226	+	926.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 2 of 5)	Lx8|LINE|L1	13361.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	2.0	24.0	16.5	12.0	2.5	17.0
Merged-chr2-58850696-3	chr2	58850188	58851188	+	926.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 11 of 13)	MTEa|LTR|ERVL-MaLR	95504.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-29976711-2	chr14	29976211	29977211	+	926.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1626.0	NM_027493	56249.0	Mm.215110	NM_027493	ENSMUSG00000015971	Actr8	5730542K05Rik|ARP8	ARP8 actin-related protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120570452-4	chr8	120569912	120570912	+	926.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 8 of 15)	intron (NM_001145896, intron 8 of 15)	18663.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84087747-4	chr10	84087229	84088229	+	926.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152790, intron 1 of 4)	intron (NR_152790, intron 1 of 4)	12968.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27687355-2	chr2	27686855	27687855	+	926.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	10154.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-68883203-4	chr9	68882714	68883714	+	926.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013646, intron 1 of 10)	intron (NM_013646, intron 1 of 10)	117868.0	NR_033299	320440.0	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180810678-2	chr1	180810178	180811178	+	926.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008210, intron 2 of 3)	B1F|SINE|Alu	2927.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-8115974-4	chr14	8115463	8116463	+	926.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	17752.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132006327-2	chr1	132005827	132006827	+	926.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1278.0	NM_007923	13714.0	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142278243-4	chr3	142277715	142278715	+	926.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190854, intron 7 of 12)	intron (NM_001190854, intron 7 of 12)	-108790.0	NM_001277216	12167.0	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	16.0	71.0	45.0	14.5	9.0	16.0
Merged-chr9-120934139-4	chr9	120933596	120934596	+	926.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007614, intron 1 of 14)	CpG	518.0	NM_001165902	12387.0	Mm.291928	NM_007614	ENSMUSG00000006932	Ctnnb1	Bfc|Catnb|Mesc	catenin (cadherin associated protein), beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54762846-4	chr11	54762366	54763366	+	926.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178626, intron 1 of 5)	intron (NM_178626, intron 1 of 5)	24837.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100060990-2	chr15	100060490	100061490	+	926.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	22326.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-66982766-2	chr3	66982266	66983266	+	926.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302357)	promoter-TSS (NM_001302357)	-995.0	NM_001302357	20429.0	Mm.39093	NM_013665	ENSMUSG00000027833	Shox2	6330543G17Rik|OG12|Og12x|Prx3|SHOT	short stature homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75782656-4	chr7	75782160	75783160	+	926.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65678.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73778263-2	chr12	73777763	73778763	+	926.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001313977)	TTS (NM_001313977)	-123061.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-11054391-2	chr18	11053885	11054885	+	926.5	f0_balb.idr|f1_c57bl6.idr	exon (NM_010258, exon 2 of 7)	exon (NM_010258, exon 2 of 7)	-1818.0	NR_105022	68434.0	Mm.57626	NR_105022	ENSMUSG00000097222	1010001N08Rik	Gata6as	RIKEN cDNA 1010001N08 gene	ncRNA	0.0	4.0	0.0	0.0	4.0	0.0
Merged-chr11-110431676-3	chr11	110431176	110432176	+	926.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	MIRb|SINE|MIR	32574.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25287215-2	chr7	25286715	25287715	+	926.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_027882, exon 8 of 20)	exon (NM_027882, exon 8 of 20)	5036.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30391701-2	chr5	30391201	30392201	+	926.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001100395, intron 12 of 46)	intron (NM_001100395, intron 12 of 46)	50038.0	NM_001033460	381738.0	Mm.389604	NM_001033460	ENSMUSG00000073102	Drc1	Ccdc164|Gm1060|b2b1654Clo	dynein regulatory complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122437330-2	chr8	122436830	122437830	+	926.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_028354, intron 7 of 10)	intron (NR_028354, intron 7 of 10)	-4390.0	NM_007806	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116597257-2	chr11	116596757	116597757	+	926.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172572)	TTS (NM_172572)	3570.0	NM_009591	11298.0	Mm.42233	NM_009591	ENSMUSG00000020804	Aanat	AA-NAT|Nat-2|Nat4|Snat	arylalkylamine N-acetyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128748554-3	chr2	128748014	128749014	+	926.492065	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 4 of 18)	Charlie1|DNA|hAT-Charlie	49599.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	17.0	25.0	19.5	6.0	43.5	15.0
Merged-chr9-90055436-6	chr9	90054846	90055846	+	926.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312649, intron 1 of 10)	AT_rich|Low_complexity|Low_complexity	1079.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	70.5	202.0	112.0	65.5	261.0	123.0
Merged-chr18-46450900-4	chr18	46450406	46451406	+	926.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14910.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60350584-4	chr10	60350018	60351018	+	926.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028732, intron 1 of 6)	intron (NM_028732, intron 1 of 6)	3667.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172588683-4	chr1	172588188	172589188	+	926.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029084, intron 1 of 4)	G-rich|Low_complexity|Low_complexity	1880.0	NM_029084	74748.0	Mm.179812	NM_029084	ENSMUSG00000053318	Slamf8	5830408F06Rik|Blame|SBBI42	SLAM family member 8	protein-coding	24.5	14.0	32.0	13.0	19.0	8.5
Merged-chr6-129211559-3	chr6	129211075	129212075	+	926.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26470.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	12.0	9.5	7.0	12.0	9.5	7.5
Merged-chr7-45181631-3	chr7	45181098	45182098	+	926.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_053256, exon 3 of 3)	exon (NM_053256, exon 3 of 3)	603.0	NM_053256	114640.0	Mm.207078	NM_053256	ENSMUSG00000038300	Pth2	Tifp39|Tip39	parathyroid hormone 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91987749-4	chr2	91987237	91988237	+	926.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011957, intron 8 of 11)	intron (NM_011957, intron 8 of 11)	-24174.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-43349050-3	chr6	43348599	43349599	+	926.422241	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 8 of 8)	Lx8|LINE|L1	-39545.0	NM_130869	18291.0	Mm.17715	NM_130869	ENSMUSG00000029736	Nobox	OG2|Og2x	NOBOX oogenesis homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46617965-4	chr8	46617463	46618463	+	926.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151680)	promoter-TSS (NR_151680)	672.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158864112-4	chr2	158863666	158864666	+	926.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69359.0	NM_001291144	71715.0	Mm.315652	NM_145742	ENSMUSG00000027655	Dhx35	1200009D07Rik|Ddx35	DEAH (Asp-Glu-Ala-His) box polypeptide 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8628922-4	chr11	8628424	8629424	+	926.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	35611.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-129612824-4	chr3	129612296	129613296	+	926.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130450, intron 3 of 4)	intron (NM_130450, intron 3 of 4)	-80408.0	NR_153368	102639747.0	Mm.393257	NR_153368		Gm35986	-	predicted gene, 35986	ncRNA	0.0	8.0	5.0	0.0	10.0	6.5
Merged-chr11-107124626-4	chr11	107124127	107125127	+	926.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359590, intron 1 of 27)	intron (NM_001359590, intron 1 of 27)	7295.0	NM_176850	207165.0	Mm.343986	NM_176850	ENSMUSG00000040481	Bptf	9430093H17Rik|Falz	bromodomain PHD finger transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10693174-4	chr19	10692672	10693672	+	926.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	L1MB3|LINE|L1	4437.0	NM_001361959	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-8863726-5	chr5	8863173	8864173	+	926.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011075, intron 26 of 27)	intron (NM_011075, intron 26 of 27)	-30048.0	NM_008830	18670.0	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-17000577-4	chr11	17000057	17001057	+	926.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	8161.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38233538-4	chr18	38233036	38234036	+	926.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16662.0	NR_015475	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	12.0	25.5	9.5	6.0	13.5	7.0
Merged-chr9-57879384-4	chr9	57878899	57879899	+	926.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31587.0	NM_027086	69459.0	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90603547-4	chr5	90603042	90604042	+	926.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028478, exon 11 of 11)	3' UTR (NM_028478, exon 11 of 11)	36985.0	NM_028478	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	2.0	0.0	0.0	0.0	0.0	0.5
Merged-chr1-120072273-4	chr1	120071798	120072798	+	926.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019432, intron 1 of 1)	C-rich|Low_complexity|Low_complexity	1482.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	13.5	32.0	33.0	9.5	34.5	6.5
Merged-chr16-16560297-3	chr16	16559797	16560797	+	926.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139232)	promoter-TSS (NM_139232)	-78.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34519415-4	chr19	34518913	34519913	+	926.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	8061.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-100882306-4	chr10	100881800	100882800	+	926.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140665.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27354956-4	chr2	27354445	27355445	+	926.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	72663.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-87237061-2	chr12	87236561	87237561	+	926.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027744, intron 2 of 7)	intron (NM_027744, intron 2 of 7)	1540.0	NM_027744	71275.0	Mm.79198	NM_027744	ENSMUSG00000072919	Noxred1	4933437F05Rik	NADP+ dependent oxidoreductase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72350412-3	chr5	72349926	72350926	+	926.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122756, intron 10 of 21)	intron (NM_001122756, intron 10 of 21)	147083.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52631672-2	chr13	52631172	52632172	+	926.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001198977, exon 8 of 14)	exon (NM_001198977, exon 8 of 14)	34790.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102747804-3	chr12	102747301	102748301	+	926.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142939, intron 1 of 1)	intron (NM_001142939, intron 1 of 1)	4041.0	NM_177140	320351.0	Mm.86546	NM_177140	ENSMUSG00000046675	Tmem251	D230037D09Rik	transmembrane protein 251	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38355403-3	chr6	38354984	38355984	+	926.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347122)	promoter-TSS (NM_001347122)	-881.0	NM_028864	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-148221638-3	chr3	148221127	148222127	+	926.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	733008.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	1.0	0.0	2.0	2.0	5.0	9.0
Merged-chr6-48445015-3	chr6	48444493	48445493	+	926.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085415)	promoter-TSS (NM_001085415)	97.0	NM_001085415	68910.0	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	5.0	17.0	1.0	0.5	2.5	8.0
Merged-chr10-127619377-4	chr10	127618886	127619886	+	926.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 1 of 88)	intron (NM_008512, intron 1 of 88)	1762.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100637910-3	chr15	100637510	100638510	+	926.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1070.0	NM_001033872	207818.0	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31022458-4	chr16	31021955	31022955	+	926.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 2 of 3)	intron (NM_198626, intron 2 of 3)	58977.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	4.5	3.0	2.0	8.5	0.0	4.0
Merged-chr14-30870368-3	chr14	30869864	30870864	+	926.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028839, intron 4 of 7)	intron (NM_028839, intron 4 of 7)	-8893.0	NM_181390	66175.0	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	3.5	22.0	16.0	7.0	17.0	45.0
Merged-chr2-152693418-3	chr2	152692904	152693904	+	926.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010376, intron 8 of 11)	intron (NM_010376, intron 8 of 11)	6256.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	3.5	2.5	7.0	8.0	0.0	0.0
Merged-chr6-116142422-4	chr6	116141909	116142909	+	926.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 1 of 5)	Lx8|LINE|L1	50965.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139457562-4	chr5	139456984	139457984	+	926.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 1 of 4)	LTR106_Mam|LTR|LTR	3050.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-125331552-4	chr10	125331053	125332053	+	926.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2590.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80317214-4	chr10	80316731	80317731	+	926.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011789, exon 14 of 14)	3' UTR (NM_011789, exon 14 of 14)	3317.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-80637330-4	chr1	80636820	80637820	+	926.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 2 of 55)	intron (NM_175291, intron 2 of 55)	28032.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-56808942-4	chr10	56808442	56809442	+	926.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	376961.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54464780-3	chr11	54464288	54465288	+	926.177795	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173753, intron 1 of 17)	intron (NM_173753, intron 1 of 17)	26609.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-51663385-4	chr6	51662860	51663860	+	926.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	118067.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-89200495-4	chr9	89200006	89201006	+	926.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007534, intron 1 of 1)	intron (NM_007534, intron 1 of 1)	1233.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	0.0	0.0	0.5	3.0	27.5	21.5
Merged-chr11-114892454-4	chr11	114891941	114892941	+	926.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359812, intron 2 of 7)	RLTR12B2|LTR|ERVK	2400.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4922162-3	chr18	4921706	4922706	+	926.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	109720.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141077871-4	chr4	141077377	141078377	+	926.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149724, intron 1 of 8)	CpG	480.0	NR_149724	66147.0	Mm.21187	NM_025383	ENSMUSG00000028923	Necap2	1110005F07Rik|AA409105|C78898|NECAP-2	NECAP endocytosis associated 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84293719-4	chr18	84293205	84294205	+	926.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 8 of 8)	intron (NM_001033341, intron 8 of 8)	205547.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103915087-4	chr3	103914633	103915633	+	926.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001356556, exon 1 of 8)	exon (NM_001356556, exon 1 of 8)	1013.0	NM_172684	229675.0	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|KDM9|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-83862014-4	chr12	83861496	83862496	+	926.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073564, intron 2 of 12)	intron (NR_073564, intron 2 of 12)	14816.0	NM_001272056	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78751669-4	chr11	78751128	78752128	+	926.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_197989, exon 1 of 1)	exon (NM_197989, exon 1 of 1)	101.0	NM_197989	69109.0	Mm.341420	NM_197989	ENSMUSG00000049489	Fam58b	1810009O10Rik|Ccnq|Fam58a	family with sequence similarity 58, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61982082-4	chr9	61981596	61982596	+	926.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 2 of 7)	intron (NM_028748, intron 2 of 7)	-35297.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122569043-2	chr10	122568543	122569543	+	926.125	f1_balb.idr|f1_c57bl6.idr	intron (NR_040616, intron 1 of 2)	intron (NR_040616, intron 1 of 2)	848.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	21.5	92.0	41.5	16.5	80.0	35.5
Merged-chr19-47463923-8	chr19	47463353	47464353	+	926.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	558.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	30.0	39.0	17.5	19.0	43.5	36.0
Merged-chr6-5104440-3	chr6	5103961	5104961	+	926.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 7 of 15)	intron (NM_181595, intron 7 of 15)	89485.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-35347575-3	chr10	35347072	35348072	+	926.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	864172.0	NM_010237	14302.0	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-97235194-3	chr13	97234685	97235685	+	926.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5920.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-29574472-4	chr5	29573975	29574975	+	926.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133907, intron 1 of 22)	RLTR45|LTR|ERVK	5233.0	NM_133907	100763.0	Mm.137746	NM_133907	ENSMUSG00000039000	Ube3c	AI853514|mKIAA0010	ubiquitin protein ligase E3C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80612112-4	chr10	80611598	80612598	+	926.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019575, intron 5 of 6)	intron (NM_019575, intron 5 of 6)	2838.0	NR_105877	102465550.0		NR_105877	ENSMUSG00000099283	Mir6912	Gm27990|mmu-mir-6912	microRNA 6912	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58401917-4	chr9	58401449	58402449	+	926.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	31445.0	NR_040727	73529.0	Mm.490924	NR_040727	ENSMUSG00000100487	1700072B07Rik	-	RIKEN cDNA 1700072B07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-131271402-4	chr3	131270896	131271896	+	926.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008212, intron 1 of 7)	intron (NM_008212, intron 1 of 7)	705.0	NM_008212	15107.0	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3336062-4	chr2	3335533	3336533	+	926.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030063)	promoter-TSS (NM_030063)	-135.0	NM_030063	78245.0	Mm.99733	NM_030063	ENSMUSG00000026644	Acbd7	9230116B18Rik	acyl-Coenzyme A binding domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85775213-3	chr1	85774710	85775710	+	926.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_108086)	promoter-TSS (NR_108086)	-61.0	NR_108086	77762.0	Mm.434298	NR_108086	ENSMUSG00000100217	9930111H07Rik	-	RIKEN cDNA 9930111H07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117358431-4	chr11	117357905	117358905	+	926.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017380, intron 8 of 9)	intron (NM_017380, intron 8 of 9)	26092.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32813146-4	chr16	32812648	32813648	+	926.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2702.0	NM_001256309	381043.0	Mm.303864	NM_001256309	ENSMUSG00000094430	Smbd1	Gm1743|Gm933	somatomedin B domain containing 1	protein-coding	8.5	18.5	9.5	12.5	14.5	9.5
Merged-chr5-30073549-3	chr5	30073043	30074043	+	926.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033402)	promoter-TSS (NR_033402)	82.0	NR_033402	22171.0	Mm.268395	NM_021288	ENSMUSG00000025747	Tyms	Ts	thymidylate synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26485894-4	chr2	26485379	26486379	+	926.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 2 of 33)	intron (NM_008714, intron 2 of 33)	-15760.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124708317-9	chr2	124707811	124708811	+	926.037048	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54730.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20694675-4	chr16	20694180	20695180	+	926.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133778)	promoter-TSS (NM_133778)	-377.0	NM_133778	78408.0	Mm.196512	NM_133778	ENSMUSG00000050821	Fam131a	2900046G09Rik	family with sequence similarity 131, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-80314130-4	chr8	80313668	80314668	+	926.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-179877.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95021080-2	chr8	95020580	95021580	+	926.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_173036, exon 2 of 12)	exon (NM_173036, exon 2 of 12)	3388.0	NM_173036	54672.0	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167068545-2	chr2	167068045	167069045	+	926.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	3252.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-42343974-2	chr6	42343474	42344474	+	926.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5854.0	NM_001289619	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45656372-2	chr14	45655840	45656840	+	926.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176845, intron 1 of 12)	intron (NM_176845, intron 1 of 12)	1713.0	NR_039593	100628600.0		NR_039593	ENSMUSG00000093167	Mir5131	mmu-mir-5131|mu-mir-5131	microRNA 5131	ncRNA	29.5	34.5	27.0	10.0	0.0	4.0
Merged-chr4-134539359-2	chr4	134538859	134539859	+	926.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029100, exon 12 of 12)	3' UTR (NM_029100, exon 12 of 12)	-3972.0	NM_029759	76824.0	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr8-95419334-3	chr8	95418856	95419856	+	926.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008187)	TTS (NM_008187)	15513.0	NM_008187	14894.0	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	0.0	0.0	0.0	0.0	0.0	2.5
Merged-chr17-34604761-2	chr17	34604267	34605267	+	926.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-1094.0	NM_001163379	55979.0	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118030191-2	chr2	118029691	118030691	+	926.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 7 of 9)	intron (NR_126479, intron 7 of 9)	81011.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	1.0	3.0	1.5	0.0	0.0	0.0
Merged-chr2-154714142-3	chr2	154713641	154714641	+	926.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57115.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	1.5	14.0	5.5	4.5	24.5	11.0
Merged-chr16-4628527-2	chr16	4628027	4629027	+	926.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030205, intron 25 of 27)	intron (NM_030205, intron 25 of 27)	-3581.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141551459-2	chr4	141550970	141551970	+	926.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5308.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	1.0	0.0	7.0	0.0	1.0	1.0
Merged-chr10-80076314-2	chr10	80075814	80076814	+	926.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359636)	promoter-TSS (NM_001359636)	-875.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28705959-2	chr17	28705459	28706459	+	926.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	B3|SINE|B2	13391.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134765681-2	chr4	134765181	134766181	+	926.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145554, intron 1 of 8)	intron (NM_145554, intron 1 of 8)	2323.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-56800486-2	chr16	56799986	56800986	+	926.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-4628.0	NM_172825	239853.0	Mm.258979	NM_172825	ENSMUSG00000022755	Adgrg7	9130020O16Rik|Gpr128	adhesion G protein-coupled receptor G7	protein-coding	0.0	0.0	0.5	2.0	0.0	2.0
Merged-chr7-4532537-4	chr7	4532036	4533036	+	926.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033548)	promoter-TSS (NM_001033548)	-94.0	NM_001033548	436022.0	Mm.425359	NM_001033548	ENSMUSG00000055809	Dnaaf3	6030429G01Rik|b2b1739Clo	dynein, axonemal assembly factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45253295-3	chr9	45252740	45253740	+	926.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008348)	TTS (NM_008348)	13467.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99479602-2	chr12	99479102	99480102	+	926.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-29528.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120360347-3	chr14	120359842	120360842	+	926.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	53890.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83368335-2	chr6	83367835	83368835	+	926.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_183138, exon 11 of 11)	exon (NM_183138, exon 11 of 11)	18851.0	NM_175277	78653.0	Mm.391470	NM_175277	ENSMUSG00000045160	Bola3	1810056O20Rik	bolA-like 3 (E. coli)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21247882-1	chr11	21247382	21248382	+	926.0	f1_c57bl6.idr	intron (NM_001290628, intron 1 of 22)	RMER1B|Other|Other	8850.0	NM_001290628	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	1.0	0.5	7.0	0.0	5.0	3.0
Merged-chr15-57694996-3	chr15	57694502	57695502	+	926.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_199449, exon 1 of 4)	5' UTR (NM_199449, exon 1 of 4)	335.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56704534-2	chr19	56704100	56705100	+	926.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-17772.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr6-115999379-2	chr6	115998879	115999879	+	926.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4374.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-26464577-4	chr12	26464074	26465074	+	926.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4641.0	NM_020557	22169.0	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	16.5	10.0	5.5	0.5	23.0	11.5
Merged-chr1-165193930-4	chr1	165193445	165194445	+	926.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151711, intron 1 of 6)	CpG	488.0	NM_145512	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-69722237-2	chr2	69721737	69722737	+	926.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081086)	promoter-TSS (NM_001081086)	-851.0	NM_001081086	228005.0	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69406058-2	chr11	69405558	69406558	+	926.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001017426, exon 11 of 23)	exon (NM_001017426, exon 11 of 23)	7617.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115503218-1	chr5	115502718	115503718	+	926.0	f1_balb.idr	Intergenic	Intergenic	-3458.0	NM_011223	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	3.5	2.5	2.0	5.0	2.0	3.5
Merged-chr11-85689511-3	chr11	85689008	85690008	+	926.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	30236.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60403050-2	chr10	60402550	60403550	+	926.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164374, exon 2 of 2)	exon (NM_001164374, exon 2 of 2)	3324.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-112781819-2	chr6	112781319	112782319	+	926.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080448, intron 4 of 21)	intron (NM_080448, intron 4 of 21)	-85149.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35257161-2	chr18	35256661	35257661	+	926.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42137.0	NM_178005	107065.0	Mm.39900	NM_178005	ENSMUSG00000071862	Lrrtm2	AI851755|BB129880|C630011A14Rik|mKIAA0416	leucine rich repeat transmembrane neuronal 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11411923-4	chr16	11411413	11412413	+	926.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290148, intron 1 of 13)	RLTR20C2_MM|LTR|ERVK	6265.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-36047884-2	chr2	36047384	36048384	+	926.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026703, intron 1 of 3)	intron (NM_026703, intron 1 of 3)	1408.0	NM_026703	68375.0	Mm.19834	NM_026703	ENSMUSG00000026895	Ndufa8	0610033L03Rik|AW261656	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-89488385-4	chr13	89487890	89488890	+	926.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52246.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	4.5	3.5	5.5	4.5	3.5	5.5
Merged-chr8-36094191-2	chr8	36093694	36094694	+	926.0	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172911)	promoter-TSS (NM_172911)	-634.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	0.0	0.0	1.0	0.0	2.0	6.5
Merged-chr11-117320618-4	chr11	117320094	117321094	+	926.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-11121.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65563870-2	chr9	65563370	65564370	+	926.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 3 of 5)	intron (NM_153119, intron 3 of 5)	16217.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-3022521-2	chr9	3022022	3023022	+	926.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	16221.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102024647-2	chr7	102024147	102025147	+	926.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 6 of 8)	intron (NM_029211, intron 6 of 8)	-6492.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56072450-2	chr17	56071950	56072950	+	926.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_024432, exon 5 of 12)	exon (NM_024432, exon 5 of 12)	6883.0	NM_024432	66530.0	Mm.28000	NM_024432	ENSMUSG00000019578	Ubxn6	1200008L11Rik|2210415J11Rik|AU040909|Ubxd1|Ubxdc2	UBX domain protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-15518036-4	chr19	15517539	15518539	+	926.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	406583.0	NM_001205339	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	3.5	8.5	5.5	2.0	6.0	8.0
Merged-chr14-75788697-2	chr14	75788197	75789197	+	926.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-1660.0	NM_026232	67554.0	Mm.46067	NM_026232	ENSMUSG00000022003	Slc25a30	4933433D23Rik|AV025504|AV221431|AW319655|KMCP1	solute carrier family 25, member 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3786200-2	chr4	3785700	3786700	+	926.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 12 of 12)	intron (NM_001111096, intron 12 of 12)	49455.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0.0	2.5	6.5	3.0	0.0	1.0
Merged-chr7-27273927-4	chr7	27273407	27274407	+	926.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010950, intron 6 of 9)	intron (NM_010950, intron 6 of 9)	15146.0	NM_010950	18223.0	Mm.458153	NM_010950	ENSMUSG00000063160	Numbl	nbl	numb-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-121508535-4	chr1	121508029	121509029	+	926.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19936.0	NM_010483	15564.0	Mm.4833	NM_010483	ENSMUSG00000050534	Htr5b	5-Ht5b	5-hydroxytryptamine (serotonin) receptor 5B	protein-coding	37.5	73.0	62.0	21.5	54.0	15.0
Merged-chr17-80127479-1	chr17	80126979	80127979	+	926.0	f0_c57.idr	promoter-TSS (NM_176963)	promoter-TSS (NM_176963)	8.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70443162-2	chr11	70442662	70443662	+	926.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	4907.0	NR_106064	102465670.0		NR_106064	ENSMUSG00000099109	Mir7115	Gm27902|mmu-mir-7115	microRNA 7115	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117056476-2	chr8	117055985	117056985	+	925.974976	f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 12 of 42)	intron (NM_029686, intron 12 of 42)	25964.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57463518-4	chr10	57463002	57464002	+	925.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22851.0	NR_045353	74928.0	Mm.416643	NR_045353	ENSMUSG00000097370	4930467K11Rik	-	RIKEN cDNA 4930467K11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-102144013-4	chr13	102143520	102144520	+	925.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-375803.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	4.0	2.0	0.0	0.0	1.5	1.5
Merged-chr11-48858157-4	chr11	48857672	48858672	+	925.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13248.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136464133-11	chr6	136463608	136464608	+	925.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	4.5SRNA|scRNA|scRNA	-48539.0	NM_001201390	100502936.0	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	129.0	249.0	194.5	150.5	299.0	261.5
Merged-chr9-21135174-4	chr9	21134662	21135662	+	925.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3887.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29179510-4	chr7	29179013	29180013	+	925.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026545, intron 1 of 6)	intron (NM_026545, intron 1 of 6)	1160.0	NM_026545	57296.0	Mm.273152	NM_026545	ENSMUSG00000030591	Psmd8	6720456J22Rik|AA407360|AL033291|AL033322|AL033323|C76433	proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	protein-coding	14.5	54.0	32.5	21.5	44.5	19.0
Merged-chr5-64317424-4	chr5	64316942	64317942	+	925.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 13 of 18)	intron (NM_001289514, intron 13 of 18)	87085.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	19.0	59.0	36.5	13.0	41.0	11.5
Merged-chr2-168904383-4	chr2	168903853	168904853	+	925.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51234.0	NM_009564	22722.0	Mm.2095	NM_009564	ENSMUSG00000027551	Zfp64	-	zinc finger protein 64	protein-coding	8.0	4.5	0.0	0.0	1.0	1.0
Merged-chr7-100943489-4	chr7	100942977	100943977	+	925.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	LTR108c_Mam|LTR|ERVL	-11316.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	34.5	61.5	67.0	38.5	54.0	63.0
Merged-chr4-119140329-4	chr4	119139832	119140832	+	925.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31587.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	0.0	4.0	3.0	1.5	2.5	6.5
Merged-chr2-11664107-4	chr2	11663598	11664598	+	925.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008367, intron 1 of 7)	intron (NM_008367, intron 1 of 7)	21306.0	NM_008367	16184.0	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86504358-4	chr6	86503868	86504868	+	925.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16141.0	NR_040292	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152197444-4	chr2	152196938	152197938	+	925.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29402.0	NM_007788	12995.0	Mm.23692	NM_007788	ENSMUSG00000074698	Csnk2a1	CK2|Csnk2a1-rs4	casein kinase 2, alpha 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59741707-4	chr10	59741171	59742171	+	925.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359267, intron 4 of 11)	intron (NM_001359267, intron 4 of 11)	39108.0	NM_001291443	216001.0	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156295904-3	chr2	156295395	156296395	+	925.9111330000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172674, intron 13 of 17)	intron (NM_172674, intron 13 of 17)	-16578.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	16.5	59.0	33.5	15.0	33.0	35.5
Merged-chr4-106865516-4	chr4	106864967	106865967	+	925.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46003.0	NM_198438	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	0.5	3.0	2.0	0.0	6.5	5.5
Merged-chr17-5941044-4	chr17	5940501	5941501	+	925.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113353)	promoter-TSS (NM_001113353)	-279.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19957985-4	chr10	19957489	19958489	+	925.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 1 of 29)	MLT1A0|LTR|ERVL-MaLR	23463.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120523312-3	chr4	120522793	120523793	+	925.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355424, intron 12 of 14)	intron (NM_001355424, intron 12 of 14)	-8938.0	NM_177570	194219.0	Mm.29788	NM_177570	ENSMUSG00000047518	Slfnl1	4933406A14Rik	schlafen like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-115314776-3	chr9	115314274	115315274	+	925.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-4353.0	NM_024222	68292.0	Mm.296158	NM_024222	ENSMUSG00000032437	Stt3b	1300006C19Rik|Simp	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	protein-coding	50.0	82.0	61.0	3.5	5.0	4.0
Merged-chr9-48561086-3	chr9	48560572	48561572	+	925.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44051.0	NM_010924	18113.0	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	3.0	6.0	1.5	2.5	19.5	33.0
Merged-chr14-70823284-4	chr14	70822786	70823786	+	925.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29647.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	15.0	10.5	26.0	12.5	39.5	26.5
Merged-chr11-62646782-4	chr11	62646281	62647281	+	925.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198861, intron 1 of 3)	intron (NM_198861, intron 1 of 3)	1268.0	NM_001357955	192976.0	Mm.339972	NM_198861	ENSMUSG00000046417	Lrrc75a	Fam211a	leucine rich repeat containing 75A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137175764-4	chr4	137175274	137176274	+	925.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-10708.0	NR_040443	100503595.0	Mm.421314	NR_040443	ENSMUSG00000085833	Gm13003	-	predicted gene 13003	ncRNA	16.0	17.5	3.0	6.5	0.0	7.0
Merged-chr2-170240281-4	chr2	170239785	170240785	+	925.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97610.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6165333-4	chr11	6164839	6165839	+	925.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173748, intron 2 of 5)	L1MC|LINE|L1	7992.0	NR_029471	100042173.0	Mm.441799	NR_029471		Rps15a-ps6	Gm11968	ribosomal protein S15A, pseudogene 6	pseudo	8.5	15.0	4.0	8.0	8.5	4.0
Merged-chr19-3562899-4	chr19	3562390	3563390	+	925.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360430, intron 1 of 22)	L1M5|LINE|L1	12859.0	NM_001360430	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103403807-6	chr11	103403291	103404291	+	925.8703609999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 2 of 11)	intron (NM_183034, intron 2 of 11)	8873.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	88.5	88.0	103.0	79.5	144.0	90.5
Merged-chr15-102510353-4	chr15	102509851	102510851	+	925.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163643, intron 1 of 15)	MIRb|SINE|MIR	349.0	NM_001358844	26404.0	Mm.172897	NM_009582	ENSMUSG00000023050	Map3k12	DLK|MUK|Zpk	mitogen-activated protein kinase kinase kinase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-177236918-4	chr1	177236422	177237422	+	925.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011785, intron 1 of 12)	B3|SINE|B2	11845.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0.0	2.5	2.0	2.5	3.5	5.0
Merged-chr2-105399237-11	chr2	105398867	105399867	+	925.8485109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009037)	promoter-TSS (NM_009037)	-48.0	NM_009037	19672.0	Mm.4876	NM_009037	ENSMUSG00000005973	Rcn1	Rcn	reticulocalbin 1	protein-coding	0.0	3.0	0.0	0.0	6.5	1.0
Merged-chr11-69621979-4	chr11	69621463	69622463	+	925.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356469)	promoter-TSS (NM_001356469)	-89.0	NM_026991	69215.0	Mm.340410	NM_026991	ENSMUSG00000069835	Sat2	2610016A03Rik|SSAT-2|SSAT2	spermidine/spermine N1-acetyl transferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100960847-4	chr7	100960265	100961265	+	925.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	3601.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	31.0	55.0	65.5	18.0	66.5	49.0
Merged-chr7-16729666-2	chr7	16729166	16730166	+	925.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTRETN_Mm|LTR|ERVK	7737.0	NM_011927	26368.0	Mm.27096	NM_011927	ENSMUSG00000007209	Ceacam9	AA410097|AW545709|Cea-5|Cea5|mmCGM8	carcinoembryonic antigen-related cell adhesion molecule 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123957022-4	chr9	123956512	123957512	+	925.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11680.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5740771-4	chr11	5740279	5741279	+	925.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361588, intron 1 of 6)	CpG	397.0	NM_001361590	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	0.5	3.0	5.0	6.0	1.0	3.0
Merged-chr9-64774528-4	chr9	64774018	64775018	+	925.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36493.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-7090903-2	chr1	7090403	7091403	+	925.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_183028, intron 1 of 5)	intron (NM_183028, intron 1 of 5)	1983.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17234149-4	chr16	17233650	17234650	+	925.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178922, intron 1 of 2)	intron (NM_178922, intron 1 of 2)	563.0	NM_178922	58180.0	Mm.261602	NM_178922	ENSMUSG00000050240	Hic2	AA409108|HRG22|mKIAA1020	hypermethylated in cancer 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107291110-4	chr9	107290678	107291678	+	925.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1301.0	NM_178907	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	2.5	7.5	9.0	0.0	9.5	2.5
Merged-chr11-109650375-4	chr11	109649844	109650844	+	925.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021880)	promoter-TSS (NM_021880)	-577.0	NM_021880	19084.0	Mm.30039	NM_021880	ENSMUSG00000020612	Prkar1a	1300018C22Rik|RIalpha|Tse-1|Tse1	protein kinase, cAMP dependent regulatory, type I, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123663056-4	chr4	123662555	123663555	+	925.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-2826.0	NR_136925	102633214.0	Mm.399387	NR_136925		Gm12925	-	predicted gene 12925	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55763314-4	chr4	55762816	55763816	+	925.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-230841.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8683174-4	chr10	8682670	8683670	+	925.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-164345.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33566405-4	chr17	33565910	33566910	+	925.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053214, intron 1 of 27)	intron (NM_053214, intron 1 of 27)	10703.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	33.0	44.5	48.5	10.0	40.0	28.0
Merged-chr11-59624450-3	chr11	59623953	59624953	+	925.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	11487.0	NM_001011740	257886.0	Mm.457883	NM_001011740	ENSMUSG00000044061	Olfr225	MOR256-51	olfactory receptor 225	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96889018-3	chr11	96888439	96889439	+	925.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27575.0	NM_001308183	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	29.0	88.5	72.0	45.0	140.5	80.5
Merged-chr15-103358067-3	chr15	103357565	103358565	+	925.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001314041, intron 3 of 30)	intron (NM_001314041, intron 3 of 30)	-7540.0	NR_105928	102466775.0		NR_105928	ENSMUSG00000098419	Mir6963	Gm27724|mmu-mir-6963	microRNA 6963	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79293186-4	chr11	79292689	79293689	+	925.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38494.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	5.0	8.0	7.0	1.5	9.5	10.5
Merged-chr19-3084238-2	chr19	3083738	3084738	+	925.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	113465.0	NR_045304	70011.0	Mm.393871	NR_045304	ENSMUSG00000100969	1700030N03Rik	1700087C08Rik	RIKEN cDNA 1700030N03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117877567-2	chr10	117877067	117878067	+	925.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31593.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	1.5	24.0	10.0	1.5	24.0	10.0
Merged-chr4-134759746-4	chr4	134759255	134760255	+	925.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145554, intron 1 of 8)	intron (NM_145554, intron 1 of 8)	8249.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98338483-3	chr7	98337976	98338976	+	925.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17268.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35844125-4	chr16	35843653	35844653	+	925.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039530, intron 12 of 16)	intron (NM_001039530, intron 12 of 16)	27229.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71275938-4	chr2	71275398	71276398	+	925.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 17 of 17)	intron (NM_172436, intron 17 of 17)	63952.0	NM_010064	13427.0	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38455526-4	chr16	38455037	38456037	+	925.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2848.0	NM_007414	11544.0	Mm.20047	NM_007414	ENSMUSG00000002844	Adprh	Arh1	ADP-ribosylarginine hydrolase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-89733097-2	chr10	89732597	89733597	+	925.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359468)	promoter-TSS (NM_001359468)	-802.0	NM_025914	67019.0	Mm.335292	NM_025914	ENSMUSG00000019948	Actr6	2010200J04Rik|AU044443|Arp6|ArpX|CDA12	ARP6 actin-related protein 6	protein-coding	3.0	4.5	6.0	3.5	5.5	2.5
Merged-chr6-142991766-4	chr6	142991253	142992253	+	925.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27301.0	NM_011374	20449.0	Mm.260838	NM_011374	ENSMUSG00000030283	St8sia1	9330109E03Rik|GD3S|Sia-T|Siat8|Siat8a	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100106497-4	chr12	100106010	100107010	+	925.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5821.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60418295-4	chr2	60417797	60418797	+	925.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008867, exon 30 of 30)	3' UTR (NM_008867, exon 30 of 30)	6772.0	NR_046065	100039176.0	Mm.261790	NR_046065	ENSMUSG00000087283	Gm13580	-	predicted gene 13580	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120362877-4	chr2	120362363	120363363	+	925.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173734, intron 17 of 19)	intron (NM_173734, intron 17 of 19)	-9726.0	NM_147153	269338.0	Mm.246131	NM_147153	ENSMUSG00000027291	Vps39	A230065P22Rik|AW743070|Vam6|Vam6P|mVam6	VPS39 HOPS complex subunit	protein-coding	1.5	7.5	5.0	1.5	2.0	3.5
Merged-chr2-150669826-4	chr2	150669335	150670335	+	925.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040331)	TTS (NR_040331)	-1595.0	NM_080575	68738.0	Mm.7044	NM_080575	ENSMUSG00000027452	Acss1	1110032O15Rik|AI788978|Acas2|Acas2l|AceCS2	acyl-CoA synthetase short-chain family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44342183-4	chr10	44341652	44342652	+	925.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001314013, intron 5 of 6)	intron (NM_001314013, intron 5 of 6)	-17524.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-37490507-4	chr7	37490009	37491009	+	925.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172385, intron 5 of 5)	intron (NM_172385, intron 5 of 5)	279243.0	NM_172385	243937.0	Mm.322505	NM_172385	ENSMUSG00000043456	Zfp536	9630010P11Rik|Znf536|mKIAA0390	zinc finger protein 536	protein-coding	8.5	6.5	7.0	6.5	6.5	5.0
Merged-chr2-163643573-3	chr2	163643071	163644071	+	925.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012032, intron 1 of 9)	PB1D7|SINE|Alu	-1279.0	NR_028113	68386.0	Mm.410649	NR_028113	ENSMUSG00000058812	0610039K10Rik	-	RIKEN cDNA 0610039K10 gene	ncRNA	17.0	71.0	47.5	14.0	71.5	45.5
Merged-chr17-13938901-3	chr17	13938418	13939418	+	925.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9455.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27172299-3	chr14	27171802	27172802	+	925.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	MTC|LTR|ERVL-MaLR	28309.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85273928-1	chr1	85273428	85274428	+	925.6666869999999	f1_balb.idr	Intergenic	Intergenic	-3362.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-17858093-3	chr5	17857609	17858609	+	925.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	RMER1B|Other|Other	-8317.0	NM_001159556	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92697930-3	chr16	92697561	92698561	+	925.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009821)	promoter-TSS (NM_009821)	-732.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24903666-2	chr7	24903166	24904166	+	925.6666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130152)	promoter-TSS (NM_001130152)	680.0	NM_001130151	16801.0	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99537128-3	chr7	99536583	99537583	+	925.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178220, intron 1 of 14)	MIR|SINE|MIR	1597.0	NM_177231	109689.0	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	9.5	9.5	2.5	10.0	6.0	7.0
Merged-chr9-99386825-3	chr9	99386330	99387330	+	925.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008624, exon 6 of 6)	3' UTR (NM_008624, exon 6 of 6)	-28300.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64239941-2	chr5	64239469	64240469	+	925.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	9612.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	20.0	79.5	32.5	56.5	82.5	49.5
Merged-chr7-101550001-2	chr7	101549493	101550493	+	925.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	5809.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	154.5	410.0	232.5	72.5	240.0	164.0
Merged-chr19-5851638-2	chr19	5851138	5852138	+	925.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026169, exon 11 of 11)	3' UTR (NM_026169, exon 11 of 11)	-6158.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103332704-4	chr11	103332195	103333195	+	925.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133715, exon 16 of 16)	3' UTR (NM_133715, exon 16 of 16)	12007.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-58611969-4	chr6	58611444	58612444	+	925.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011920, intron 1 of 15)	RMER17C2|LTR|ERVK	15272.0	NM_011920	26357.0	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61443579-4	chr9	61443061	61444061	+	925.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71195.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-13454755-4	chr1	13454264	13455264	+	925.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80681.0	NM_008678	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64021054-5	chr9	64020450	64021450	+	925.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008542, exon 1 of 4)	exon (NM_008542, exon 1 of 4)	1109.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24447507-4	chr13	24447013	24448013	+	925.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111110, intron 11 of 16)	L1MEf|LINE|L1	32391.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156258643-4	chr2	156258145	156259145	+	925.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172674, intron 4 of 17)	intron (NM_172674, intron 4 of 17)	-53828.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	39.5	51.0	30.5	30.0	22.0	32.0
Merged-chr4-11190734-4	chr4	11190241	11191241	+	925.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009830)	promoter-TSS (NM_009830)	-610.0	NM_001037134	12448.0	Mm.35867	NM_009830	ENSMUSG00000028212	Ccne2	-	cyclin E2	protein-coding	0.0	2.0	2.0	1.5	0.0	2.5
Merged-chr6-72851758-3	chr6	72851260	72852260	+	925.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019715, intron 3 of 6)	intron (NM_019715, intron 3 of 6)	47532.0	NM_001347231	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	1.0	1.5	2.0	1.0	1.5	2.0
Merged-chr14-9468847-4	chr14	9468353	9469353	+	925.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	-415242.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	15.0	16.5	17.5	10.5	25.0	20.0
Merged-chr2-165445122-4	chr2	165444632	165445632	+	925.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054055, intron 3 of 12)	intron (NM_054055, intron 3 of 12)	28065.0	NM_054055	114644.0	Mm.250738	NM_054055	ENSMUSG00000018459	Slc13a3	NaDC-3|NaDC3|SDCT2	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	protein-coding	3.0	9.5	1.0	1.0	2.0	0.0
Merged-chr13-45911395-3	chr13	45910886	45911886	+	925.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	53605.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	4.0	23.0	10.5	19.5	69.5	20.5
Merged-chr1-144002149-3	chr1	144001605	144002605	+	925.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009061, intron 4 of 4)	intron (NM_009061, intron 4 of 4)	2044.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-140489727-3	chr6	140489220	140490220	+	925.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144920, intron 3 of 30)	intron (NM_144920, intron 3 of 30)	65621.0	NM_144920	109135.0	Mm.247670	NM_144920	ENSMUSG00000030231	Plekha5	2810431N21Rik|AI428202|AK129423|AMH-Cre|Ayu21-9|Gt(pU21)9Imeg|Pepp2|Tg(AMH-cre)1Flor	pleckstrin homology domain containing, family A member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4471344-3	chr7	4470854	4471854	+	925.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028416)	promoter-TSS (NR_028416)	-470.0	NR_028416	320749.0	Mm.396688	NR_028416		D630041G03Rik	-	RIKEN cDNA D630041G03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36089651-4	chr1	36089150	36090150	+	925.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	21250.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16628291-4	chr7	16627804	16628804	+	925.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136929, intron 2 of 2)	intron (NR_136929, intron 2 of 2)	-13311.0	NM_172739	232906.0	Mm.28646	NM_172739	ENSMUSG00000058230	Arhgap35	6430596G11Rik|AI841135|Grlf1|mKIAA1722|p190A|p190RhoGAP	Rho GTPase activating protein 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170328750-4	chr2	170328273	170329273	+	925.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27588.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37657514-4	chr13	37657010	37658010	+	925.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-168528.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	51.5	97.5	50.5	49.0	83.5	56.0
Merged-chr11-20958485-1	chr11	20957985	20958985	+	925.5	f0_balb.idr	Intergenic	Intergenic	-127377.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	10.5	25.0	2.0	10.5	3.5	5.0
Merged-chr7-55847823-4	chr7	55847318	55848318	+	925.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 1 of 30)	intron (NM_011370, intron 1 of 30)	5747.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163421966-2	chr2	163421466	163422466	+	925.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	2195.0	NR_151490	108168734.0	Mm.440000	NR_151490		2900093K20Rik	-	RIKEN cDNA 2900093K20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37847776-4	chr13	37847287	37848287	+	925.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	20394.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123960973-2	chr4	123960473	123961473	+	925.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43540.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29164582-4	chr17	29164080	29165080	+	925.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360239, intron 16 of 21)	RMER15|LTR|ERVL	29524.0	NM_001002786	442827.0	Mm.440341	NM_001002786	ENSMUSG00000064147	Rab44	9830134C10Rik	RAB44, member RAS oncogene family	protein-coding	0.5	6.0	0.0	6.0	7.0	4.5
Merged-chr19-44887807-2	chr19	44887307	44888307	+	925.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43312.0	NM_172638	226151.0	Mm.212609	NM_172638	ENSMUSG00000036097	Slf2	3632432H19|Fam178a	SMC5-SMC6 complex localization factor 2	protein-coding	0.0	0.0	0.0	4.0	0.5	1.0
Merged-chr18-60775747-2	chr18	60775247	60776247	+	925.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020600, intron 1 of 4)	intron (NM_020600, intron 1 of 4)	1151.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	0.0	9.5	15.0	10.5	20.0	10.0
Merged-chr1-133012504-1	chr1	133012004	133013004	+	925.5	f0_balb.idr	intron (NM_008575, intron 4 of 11)	intron (NM_008575, intron 4 of 11)	12912.0	NR_126506	17248.0	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	2.0	16.0	0.0	0.0	2.5	1.0
Merged-chr3-149461827-4	chr3	149461311	149462311	+	925.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	187074.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32193186-4	chr17	32192688	32193688	+	925.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-3718.0	NM_001347341	71932.0	Mm.176240	NM_001033163	ENSMUSG00000037577	Ephx3	2310063B19Rik|Abhd9|EH3	epoxide hydrolase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25472114-2	chr14	25471614	25472614	+	925.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	ID_B1|SINE|B4	12929.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-23142881-4	chr19	23142399	23143399	+	925.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010638, intron 1 of 1)	intron (NM_010638, intron 1 of 1)	1673.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5804895-3	chr19	5804454	5805454	+	925.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-2282.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-55024069-4	chr9	55023577	55024577	+	925.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145129, intron 3 of 5)	intron (NM_145129, intron 3 of 5)	2482.0	NM_145129	110834.0	Mm.63569	NM_145129	ENSMUSG00000032303	Chrna3	(a)3|A730007P14Rik|Acra-3|Acra3	cholinergic receptor, nicotinic, alpha polypeptide 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110890529-2	chr12	110890029	110891029	+	925.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289510, intron 1 of 19)	intron (NM_001289510, intron 1 of 19)	1265.0	NM_001081057	104859.0	Mm.35583	NM_175336	ENSMUSG00000021275	Tecpr2	4930573I19Rik|AI604920|mKIAA0297	tectonin beta-propeller repeat containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139294253-2	chr4	139293763	139294763	+	925.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151463, exon 11 of 11)	non-coding (NR_151463, exon 11 of 11)	16445.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	2.0	13.5	4.0	5.5	3.5	2.5
Merged-chr6-48539562-4	chr6	48539062	48540062	+	925.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347164, intron 2 of 2)	intron (NM_001347164, intron 2 of 2)	1993.0	NM_133764	76252.0	Mm.30214	NM_133764	ENSMUSG00000039347	Atp6v0e2	0610006O14Rik|NM9.2	ATPase, H+ transporting, lysosomal V0 subunit E2	protein-coding	0.0	0.5	6.0	2.0	0.0	3.5
Merged-chr10-117688443-2	chr10	117687943	117688943	+	925.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001288586)	TTS (NM_001288586)	22315.0	NM_010786	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3393749-2	chr4	3393249	3394249	+	925.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-143341.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	1.0	0.0	0.0	3.0	0.0	0.0
Merged-chr5-88504873-2	chr5	88504373	88505373	+	925.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_017468, exon 10 of 10)	3' UTR (NM_017468, exon 10 of 10)	16898.0	NM_017468	13801.0	Mm.8014	NM_017468	ENSMUSG00000029286	Enam	abte	enamelin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31082022-2	chr6	31081522	31082522	+	925.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18929.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120749375-2	chr5	120748875	120749875	+	925.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347448, intron 1 of 11)	intron (NM_001347448, intron 1 of 11)	473.0	NM_145227	246728.0	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-85430221-4	chr13	85429723	85430723	+	925.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140737.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	4.0	5.0	6.5	5.5	1.5	0.0
Merged-chr10-121316560-4	chr10	121316068	121317068	+	925.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361015, intron 2 of 12)	intron (NM_001361015, intron 2 of 12)	-5172.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	0.0	0.0	1.5	2.0	5.5	1.5
Merged-chr10-19187305-4	chr10	19186805	19187805	+	925.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038022, intron 1 of 1)	intron (NR_038022, intron 1 of 1)	20067.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160375036-4	chr2	160374550	160375550	+	925.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7985.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128067541-4	chr2	128067060	128068060	+	925.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028765, intron 14 of 17)	intron (NM_028765, intron 14 of 17)	-58478.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153234944-3	chr2	153234440	153235440	+	925.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018807, intron 2 of 2)	Charlie15a|DNA|hAT-Charlie	6418.0	NM_018807	54711.0	Mm.103199	NM_018807	ENSMUSG00000051413	Plagl2	AU018672|AW552839|mKIAA0198	pleiomorphic adenoma gene-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-55097345-3	chr15	55096865	55097865	+	925.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-6874.0	NM_001355594	72107.0	Mm.486550	NM_183089	ENSMUSG00000022422	Dscc1	2010006I05Rik|2600005O03Rik|Dcc1	DNA replication and sister chromatid cohesion 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-17878652-3	chr5	17878127	17879127	+	925.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	10332.0	NM_001159558	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66931773-3	chr14	66931257	66932257	+	925.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20549.0	NM_175498	239157.0	Mm.44358	NM_175498	ENSMUSG00000046204	Pnma2	A830049P17Rik|mKIAA0883	paraneoplastic antigen MA2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-41487191-3	chr12	41486676	41487676	+	925.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	-1119.0	NM_010733	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80824075-4	chr10	80823541	80824541	+	925.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2615.0	NM_001301034	18245.0	Mm.398119	NM_008753	ENSMUSG00000035242	Oaz1	AZ-1|AZ1|Antizyme|ODC-Az|Oaz	ornithine decarboxylase antizyme 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84229126-4	chr3	84228611	84229611	+	925.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271726, intron 1 of 11)	intron (NM_001271726, intron 1 of 11)	-8234.0	NM_030706	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	0.5	5.0	5.0	0.5	5.0	5.0
Merged-chr9-107288922-4	chr9	107288418	107289418	+	925.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316691, intron 1 of 7)	intron (NM_001316691, intron 1 of 7)	478.0	NM_001316691	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	42.0	153.5	101.0	13.0	28.0	32.5
Merged-chr17-31139650-4	chr17	31139136	31140136	+	925.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	4646.0	NM_009363	21785.0	Mm.1825	NM_009363	ENSMUSG00000024028	Tff2	SP|mSP	trefoil factor 2 (spasmolytic protein 1)	protein-coding	13.0	0.0	0.5	10.0	4.0	1.5
Merged-chr6-128992938-3	chr6	128992439	128993439	+	925.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015455)	promoter-TSS (NR_015455)	-22.0	NR_015455	408064.0	Mm.172429	NR_015455		BC064078	-	cDNA sequence BC064078	ncRNA	35.5	31.0	41.0	81.0	68.5	88.5
Merged-chr11-117848489-4	chr11	117848024	117849024	+	925.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009689)	promoter-TSS (NM_009689)	-713.0	NM_001012273	11799.0	Mm.8552	NM_009689	ENSMUSG00000017716	Birc5	AAC-11|Api4|TIAP|survivin40	baculoviral IAP repeat-containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74123185-4	chr17	74122698	74123698	+	925.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75282.0	NM_053188	94224.0	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65293230-4	chr9	65292731	65293731	+	925.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1029.0	NM_011802	270166.0	Mm.30088	NM_011802	ENSMUSG00000015357	Clpx	AU014732|E330029I21	caseinolytic mitochondrial matrix peptidase chaperone subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-97699159-4	chr13	97698647	97699647	+	925.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	48264.0	NR_152140	403201.0	Mm.110162	NR_152140		5330416C01Rik	Gm532	RIKEN cDNA 5330416C01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4031157-4	chr18	4030589	4031589	+	925.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-134743.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61176024-3	chr10	61175524	61176524	+	925.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017407, intron 2 of 3)	intron (NM_001017407, intron 2 of 3)	762.0	NM_023064	65971.0	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120073099-4	chr1	120072586	120073586	+	925.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019432, intron 1 of 1)	intron (NM_019432, intron 1 of 1)	694.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	98.0	191.0	176.0	75.5	125.0	122.0
Merged-chr1-174049570-4	chr1	174049044	174050044	+	925.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146716)	promoter-TSS (NM_146716)	-831.0	NM_146716	258711.0	Mm.377648	NM_146716	ENSMUSG00000047048	Olfr432	MOR123-2	olfactory receptor 432	protein-coding	1.5	22.0	9.0	1.5	29.5	8.0
Merged-chr4-40868939-4	chr4	40868443	40869443	+	925.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-14406.0	NM_022305	14595.0	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120432181-4	chr2	120431683	120432683	+	925.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172672, intron 10 of 23)	HAL1|LINE|L1	-28067.0	NM_001110496	211499.0	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-176847613-4	chr1	176847113	176848113	+	925.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 8 of 18)	intron (NM_001357390, intron 8 of 18)	-11480.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	29.0	78.5	34.5	14.0	39.0	22.5
Merged-chr5-147363228-3	chr5	147362738	147363738	+	925.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010229, intron 9 of 23)	intron (NM_010229, intron 9 of 23)	37251.0	NM_010229	14255.0	Mm.194	NM_010229	ENSMUSG00000042817	Flt3	B230315G04|CD135|Flk-2|Flk2|Flt-3|Ly72|wmfl	FMS-like tyrosine kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-164366965-2	chr1	164366465	164367465	+	925.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_138314, intron 9 of 13)	intron (NM_138314, intron 9 of 13)	59293.0	NM_138314	171567.0	Mm.219428	NM_138314	ENSMUSG00000026575	Nme7	D530024H21Rik|Nm23-M7|Nm23-r7	NME/NM23 family member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32405433-2	chr9	32404933	32405933	+	925.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11448.0	NM_001168354	56379.0	Mm.390168	NM_019659	ENSMUSG00000041248	Kcnj1	Kir1.1|ROMK|Romk2	potassium inwardly-rectifying channel, subfamily J, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10023385-4	chr19	10022851	10023851	+	925.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153790, intron 1 of 10)	intron (NR_153790, intron 1 of 10)	5157.0	NM_001347430	74760.0	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	12.0	27.5	29.0	13.0	16.5	24.0
Merged-chr8-25148420-2	chr8	25147920	25148920	+	925.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER34|LTR|ERV1	10813.0	NR_106187	102467006.0		NR_106187	ENSMUSG00000099142	Mir8108	Gm27484|mmu-mir-8108	microRNA 8108	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123064344-2	chr5	123063844	123064844	+	925.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11931.0	NM_001039723	330189.0	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80113818-3	chr12	80113309	80114309	+	925.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007564)	promoter-TSS (NM_007564)	-796.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	14.5	65.5	30.0	21.0	43.0	20.0
Merged-chr7-45405235-4	chr7	45404758	45405758	+	925.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010596)	promoter-TSS (NM_010596)	-702.0	NM_010596	16495.0	Mm.12955	NM_010596	ENSMUSG00000038201	Kcna7	Kv1.7	potassium voltage-gated channel, shaker-related subfamily, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr2-11332138-3	chr2	11331670	11332670	+	925.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7319.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58020305-3	chr15	58019795	58020795	+	925.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13999.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28692092-4	chr17	28691614	28692614	+	925.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357724)	promoter-TSS (NM_001357724)	-454.0	NM_001168513	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46298780-4	chr17	46298262	46299262	+	925.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286013, intron 2 of 5)	intron (NM_001286013, intron 2 of 5)	834.0	NM_001286013	106565.0	Mm.23633	NM_134120	ENSMUSG00000047428	Dlk2	AI413481|DLK-2|Egfl9	delta like non-canonical Notch ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-51376291-3	chr2	51375779	51376779	+	925.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61621.0	NR_130155	73375.0	Mm.396227	NR_130155	ENSMUSG00000086007	1700057H21Rik	-	RIKEN cDNA 1700057H21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70516519-3	chr11	70516018	70517018	+	925.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1902.0	NM_001013607	327956.0	Mm.244514	NM_001013607	ENSMUSG00000020830	Vmo1	Gm741	vitelline membrane outer layer 1 homolog (chicken)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75923453-4	chr15	75922960	75923960	+	925.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-1900.0	NM_025412	66194.0	Mm.250599	NM_025412	ENSMUSG00000022571	Pycrl	1110058B13Rik|2700073G24Rik|Pycr3	pyrroline-5-carboxylate reductase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-15829291-3	chr19	15828805	15829805	+	925.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95317.0	NM_001205339	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5012460-4	chr11	5011967	5012967	+	925.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243043, intron 2 of 22)	intron (NM_001243043, intron 2 of 22)	25643.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69182572-4	chr3	69182083	69183083	+	925.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39836.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	17.0	10.0	3.0	6.0	6.5	14.0
Merged-chr15-27673292-4	chr15	27672777	27673777	+	925.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	8265.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70695251-4	chr12	70694746	70695746	+	925.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130268.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	0.5	1.5	1.5	0.0	5.0	0.5
Merged-chr10-120980345-4	chr10	120979875	120980875	+	925.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1045.0	NM_001081193	380664.0	Mm.339371	NM_001081193	ENSMUSG00000048661	Lemd3	AI316861|Man1	LEM domain containing 3	protein-coding	1.5	4.0	0.0	0.0	7.0	1.0
Merged-chr9-31543582-3	chr9	31543066	31544066	+	925.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79328.0	NM_144936	235135.0	Mm.390134	NM_144936	ENSMUSG00000041737	Tmem45b	BC018222	transmembrane protein 45b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-108011260-3	chr11	108010760	108011760	+	925.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 8 of 16)	intron (NM_011101, intron 8 of 16)	14412.0	NR_106082	102465705.0		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	2.0	4.0	1.5	4.5	3.5	0.5
Merged-chr19-5796212-6	chr19	5795713	5796713	+	925.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_144621)	promoter-TSS (NR_144621)	-232.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128299951-4	chr10	128299447	128300447	+	925.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1863.0	NM_031252	83430.0	Mm.125482	NM_031252	ENSMUSG00000025383	Il23a	IL-23|p19	interleukin 23, alpha subunit p19	protein-coding	0.0	13.5	15.5	8.0	6.5	3.0
Merged-chr2-166012466-4	chr2	166011943	166012943	+	925.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	19806.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	23.5	55.0	32.5	24.0	54.0	27.5
Merged-chr11-36938301-2	chr11	36937801	36938801	+	925.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011856, intron 1 of 28)	intron (NM_011856, intron 1 of 28)	5940.0	NM_001290702	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.5	14.0	0.0
Merged-chr3-149290361-4	chr3	149289860	149290860	+	925.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15623.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43091340-3	chr1	43090770	43091770	+	925.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013025, intron 2 of 12)	intron (NM_001013025, intron 2 of 12)	1216.0	NM_001357299	73122.0	Mm.246069	NM_001013025	ENSMUSG00000070939	Tgfbrap1	3110018K12Rik|AU024090|AU042859|AW742551|Trap1	transforming growth factor, beta receptor associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-30182934-4	chr17	30182441	30183441	+	925.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356265, intron 4 of 5)	intron (NM_001356265, intron 4 of 5)	177902.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147459941-4	chr5	147459447	147460447	+	925.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028291, intron 4 of 18)	intron (NM_028291, intron 4 of 18)	29791.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0.0	0.0	1.0	0.0	0.0	0.5
Merged-chr13-8888750-2	chr13	8888250	8889250	+	925.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_145360, intron 4 of 4)	B3|SINE|B2	3144.0	NM_145360	319554.0	Mm.29847	NM_145360	ENSMUSG00000058258	Idi1	4832416K17Rik|IPPI1	isopentenyl-diphosphate delta isomerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83425458-4	chr8	83424956	83425956	+	925.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009904, intron 13 of 14)	intron (NM_009904, intron 13 of 14)	17206.0	NM_001285992	56367.0	Mm.246911	NM_019708	ENSMUSG00000063253	Scoc	0610011C06Rik|2810002J11Rik|AA415030|SCOCO	short coiled-coil protein	protein-coding	7.0	0.0	6.0	7.0	7.0	1.0
Merged-chr8-106165567-4	chr8	106165078	106166078	+	925.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133792)	TTS (NM_133792)	-3276.0	NR_151676	330836.0	Mm.46749	NM_178798	ENSMUSG00000031904	Slc7a6	AI643885|LAT-2|LAT3|y+LAT-2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102827974-4	chr2	102827465	102828465	+	925.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 11 of 13)	MTC|LTR|ERVL-MaLR	73700.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	8.5	22.5	7.0	9.5	27.5	15.5
Merged-chr19-8968251-2	chr19	8967751	8968751	+	925.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_026007, exon 2 of 10)	exon (NM_026007, exon 2 of 10)	1210.0	NM_026007	67160.0	Mm.247762	NM_026007	ENSMUSG00000071644	Eef1g	2610301D06Rik|AA407312|EF1G	eukaryotic translation elongation factor 1 gamma	protein-coding	25.5	27.0	7.5	6.5	22.0	0.0
Merged-chr5-139338050-4	chr5	139337533	139338533	+	925.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_197980, exon 3 of 3)	3' UTR (NM_197980, exon 3 of 3)	7133.0	NM_197980	68033.0	Mm.261064	NM_197980	ENSMUSG00000045438	Cox19	1810074D02Rik|2810437L13Rik	cytochrome c oxidase assembly protein 19	protein-coding	7.5	12.0	14.0	0.0	0.0	1.0
Merged-chr15-5432230-4	chr15	5431752	5432752	+	925.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64066.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-74018014-3	chr13	74017521	74018521	+	925.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182839, intron 1 of 3)	intron (NM_182839, intron 1 of 3)	8602.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8898483-3	chr10	8897983	8898983	+	925.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12413.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.0	0.0	1.0	9.5	3.5	0.0
Merged-chr2-5417395-3	chr2	5416900	5417900	+	925.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030601, intron 1 of 1)	ID4_|SINE|ID	38010.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-24702554-3	chr1	24702119	24703119	+	925.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026719, intron 3 of 15)	intron (NM_026719, intron 3 of 15)	23701.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0.5	13.5	3.5	1.0	2.5	0.0
Merged-chr9-109021965-3	chr9	109021464	109022464	+	925.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 9 of 13)	intron (NR_153430, intron 9 of 13)	-16603.0	NM_001284332	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19613389-3	chr10	19612939	19613939	+	925.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-8589.0	NM_178258	237310.0	Mm.331979	NM_178258	ENSMUSG00000039760	Il22ra2	CRF2-10|CRF2-s1|CRF2X|Il-22bp	interleukin 22 receptor, alpha 2	protein-coding	7.5	9.5	14.5	7.0	9.5	14.5
Merged-chr10-78156901-4	chr10	78156392	78157392	+	925.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC|LINE|L1	12876.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118494265-4	chr11	118493765	118494765	+	925.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024931, intron 13 of 14)	intron (NM_001024931, intron 13 of 14)	17433.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-32400111-4	chr3	32399574	32400574	+	925.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34409.0	NM_009517	22401.0	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-115329341-4	chr10	115328861	115329861	+	925.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13770.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29442638-4	chr19	29442133	29443133	+	925.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 3 of 5)	intron (NM_021396, intron 3 of 5)	31714.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100601302-7	chr13	100600820	100601820	+	925.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038602, intron 3 of 6)	intron (NM_001038602, intron 3 of 6)	15624.0	NM_178410	218518.0	Mm.25300	NM_178410	ENSMUSG00000021636	Marveld2	BC003296|MARVD2|Mrvldc2|Tric|Trica|Tricb|Tricc	MARVEL (membrane-associating) domain containing 2	protein-coding	16.5	37.0	34.5	16.5	39.0	29.0
Merged-chr11-5509340-4	chr11	5508854	5509854	+	925.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-11287.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	31.0	37.0	26.0	11.5	8.5	13.5
Merged-chr14-32169063-3	chr14	32168563	32169563	+	925.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019744, intron 1 of 9)	intron (NM_019744, intron 1 of 9)	3274.0	NM_019744	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-103474446-4	chr5	103473949	103474949	+	925.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011204, intron 2 of 47)	intron (NM_011204, intron 2 of 47)	49257.0	NM_011204	19249.0	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-28107658-3	chr3	28107157	28108157	+	925.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 20 of 25)	intron (NM_008875, intron 20 of 25)	123486.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111146571-2	chr8	111146071	111147071	+	925.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-1073.0	NR_040364	434350.0	Mm.442061	NR_040363		9430091E24Rik	-	RIKEN cDNA 9430091E24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6270040-4	chr19	6269538	6270538	+	925.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	5194.0	NR_029720	387187.0		NR_029720	ENSMUSG00000065523	Mir192	Mirn192|mir-192|mmu-mir-192	microRNA 192	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90105680-4	chr9	90105196	90106196	+	925.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039147, intron 3 of 12)	intron (NM_001039147, intron 3 of 12)	9124.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	4.5	5.5	4.0	1.0	3.5	5.0
Merged-chr16-55817153-2	chr16	55816653	55817653	+	925.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159395, intron 6 of 12)	(T)n|Simple_repeat|Simple_repeat	4985.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10879704-4	chr16	10879194	10880194	+	925.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35103.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60747942-7	chr18	60747423	60748423	+	925.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	497.0	NM_001348100	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-63511095-4	chr2	63510578	63511578	+	925.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64210.0	NR_152174	667257.0	Mm.417007	NR_152174		Gm8541	EG667257	predicted gene 8541	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-60541260-4	chr3	60540751	60541751	+	925.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	40072.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	5.0	1.5	13.5	8.5	7.0	10.5
Merged-chr18-57636013-4	chr18	57635504	57636504	+	925.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045360, intron 2 of 2)	intron (NR_045360, intron 2 of 2)	2581.0	NR_045360	70157.0	Mm.490532	NR_045360		2210409D07Rik	-	RIKEN cDNA 2210409D07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141440803-4	chr7	141440285	141441285	+	925.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001360523, exon 8 of 16)	exon (NM_001360523, exon 8 of 16)	-2911.0	NM_001360724	68267.0	Mm.33729	NM_026646	ENSMUSG00000019082	Slc25a22	1300006L01Rik|AI060884|Gc1	solute carrier family 25 (mitochondrial carrier, glutamate), member 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-93444649-3	chr3	93444205	93445205	+	925.0888669999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163098, exon 2 of 2)	exon (NM_001163098, exon 2 of 2)	2375.0	NM_001163098	99681.0	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79296315-2	chr11	79295816	79296816	+	925.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41621.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	3.5	0.0	2.0	0.5	5.0	1.5
Merged-chr2-146517076-4	chr2	146516568	146517568	+	925.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5064.0	NM_001033348	241694.0	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding	8.0	15.0	13.0	10.0	18.0	11.5
Merged-chr16-18877873-6	chr16	18877359	18878359	+	925.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010435, intron 1 of 24)	intron (NM_010435, intron 1 of 24)	1109.0	NM_010435	15260.0	Mm.15694	NM_010435	ENSMUSG00000022702	Hira	AA138857|D16Ertd95e|Gm15797|N28177|Tuple1	histone cell cycle regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100195651-4	chr13	100195141	100196141	+	925.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126182, intron 2 of 15)	intron (NM_001126182, intron 2 of 15)	6481.0	NM_001126182	17948.0	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146578768-4	chr6	146578261	146579261	+	925.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138757)	promoter-TSS (NM_138757)	850.0	NM_026218	67529.0	Mm.333499	NM_026218	ENSMUSG00000040242	Fgfr1op2	1500031J01Rik	FGFR1 oncogene partner 2	protein-coding	34.0	90.0	84.5	66.0	141.5	79.5
Merged-chr13-59834908-3	chr13	59834388	59835388	+	925.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11741.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	3.0	8.0	13.5	4.5	25.0	5.5
Merged-chr5-63837268-3	chr5	63836769	63837769	+	925.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	MLT1B|LTR|ERVL-MaLR	24774.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	0.0	1.5	0.0	0.0	1.5	0.0
Merged-chr7-123368601-10	chr7	123368120	123369120	+	925.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	1295.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-52850530-4	chr12	52850037	52851037	+	925.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198111, intron 2 of 13)	intron (NM_198111, intron 2 of 13)	151154.0	NM_198111	238161.0	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	3.0	21.0	10.5	6.0	5.0	1.0
Merged-chr19-10291956-4	chr19	10291456	10292456	+	925.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	12921.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43653405-2	chr4	43652905	43653905	+	925.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026871)	TTS (NM_026871)	189.0	NM_001290462	433700.0	Mm.331569	NM_001007463	ENSMUSG00000066196	Spag8	MH-SPAG8|SMP-1	sperm associated antigen 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116845092-1	chr11	116844592	116845592	+	925.0	f1_c57bl6.idr	intron (NM_028865, intron 1 of 4)	B1_Mm|SINE|Alu	1577.0	NM_028865	74319.0	Mm.429312	NM_028865	ENSMUSG00000090266	Mettl23	1110005A03Rik|1500035B17Rik|4933424L15Rik	methyltransferase like 23	protein-coding	0.5	2.0	0.5	0.0	0.0	0.0
Merged-chr1-171287531-2	chr1	171287031	171288031	+	925.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013919, intron 1 of 12)	intron (NM_013919, intron 1 of 12)	430.0	NM_013919	30941.0	Mm.27510	NM_013919	ENSMUSG00000053483	Usp21	ESTM28|Usp16|Usp23|W53272	ubiquitin specific peptidase 21	protein-coding	4.0	37.5	26.0	17.5	33.0	19.0
Merged-chr7-121160458-2	chr7	121159958	121160958	+	925.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_139310, exon 28 of 29)	exon (NM_139310, exon 28 of 29)	77020.0	NM_139310	246190.0	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5856842-2	chr19	5856342	5857342	+	925.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026169, intron 9 of 10)	intron (NM_026169, intron 9 of 10)	-11362.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-47005372-2	chr7	47004872	47005872	+	925.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175318, intron 1 of 5)	ORR1D1|LTR|ERVL-MaLR	3042.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120876421-4	chr10	120875928	120876928	+	925.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177092, intron 1 of 6)	MLT1I|LTR|ERVL-MaLR	18799.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	0.0	2.0	3.5	0.0	0.0	0.0
Merged-chr11-105978795-3	chr11	105978271	105979271	+	925.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281819, intron 15 of 23)	intron (NM_001281819, intron 15 of 23)	3563.0	NM_009598	11421.0	Mm.754	NM_009598	ENSMUSG00000020681	Ace	AW208573|CD143	angiotensin I converting enzyme (peptidyl-dipeptidase A) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-13296702-2	chr1	13296202	13297202	+	925.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	75727.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-37645594-2	chr18	37645094	37646094	+	925.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301259, intron 1 of 3)	MT2B|LTR|ERVL	-1390.0	NM_175770	24074.0	Mm.236009	NM_175770	ENSMUSG00000051316	Taf7	55kDa|AI607308|BB007175|TAFII55|Taf2f	TATA-box binding protein associated factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96404507-1	chr11	96404007	96405007	+	925.0	f0_balb.idr	Intergenic	Intergenic	38749.0	NM_008266	15407.0	Mm.890	NM_008266	ENSMUSG00000018973	Hoxb1	Hox-2.9	homeobox B1	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr7-83879169-1	chr7	83878669	83879669	+	925.0	f1_c57bl6.idr	Intergenic	Intergenic	5172.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	34.0	114.0	79.0	69.5	101.5	97.0
Merged-chr2-152738835-3	chr2	152738334	152739334	+	925.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2583.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	10.0	26.5	6.5	0.5	24.5	2.0
Merged-chr18-4361315-2	chr18	4360815	4361815	+	925.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040328, intron 2 of 3)	RMER6B|LTR|ERVK	7768.0	NR_040328	73915.0	Mm.482777	NR_040328		4833419F23Rik	-	RIKEN cDNA 4833419F23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-76183363-2	chr5	76182863	76183863	+	925.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011626)	promoter-TSS (NM_011626)	-517.0	NM_011626	21982.0	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34515264-2	chr19	34514764	34515764	+	925.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	12210.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10607843-2	chr17	10607343	10608343	+	925.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	151627.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96963095-2	chr11	96962601	96963601	+	925.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030220, intron 2 of 6)	B4A|SINE|B4	14587.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr10-113027497-1	chr10	113026997	113027997	+	925.0	f0_balb.idr	Intergenic	Intergenic	-98471.0	NM_001033474	382423.0	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132	ataxin 7-like 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45757496-1	chr17	45756996	45757996	+	925.0	f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	22990.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	5.0	7.5	1.0	2.5	8.5	12.0
Merged-chr8-3665248-2	chr8	3664748	3665748	+	925.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026985)	promoter-TSS (NM_026985)	-514.0	NM_026985	69189.0	Mm.175176	NM_026985	ENSMUSG00000013974	Mcemp1	1810033B17Rik	mast cell expressed membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97453359-3	chr6	97452873	97453873	+	925.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	5913.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	9.0	19.5	15.5	8.5	12.0	8.0
Merged-chr17-57340203-2	chr17	57339703	57340703	+	925.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-18483.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.0	0.0	1.0	2.5	2.5	0.0
Merged-chr16-36629940-2	chr16	36629440	36630440	+	925.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	36137.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52623694-2	chr13	52623194	52624194	+	925.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 6 of 13)	intron (NM_011518, intron 6 of 13)	26812.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92398076-6	chr16	92397626	92398626	+	924.9722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	1952.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-84702926-4	chr16	84702430	84703430	+	924.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10093.0	NR_132106	100653389.0	Mm.261808	NR_132106	ENSMUSG00000097418	Mir155hg	Bic|Gm26667	Mir155 host gene (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13470469-4	chr10	13469977	13470977	+	924.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	3919.0	NM_001195065	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0.5	3.5	2.0	1.0	0.5	3.0
Merged-chr15-4042613-4	chr15	4042143	4043143	+	924.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024188, intron 3 of 16)	L2a|LINE|L2	-15237.0	NR_028266	414066.0	Mm.394461	NR_028266		BC037032	-	cDNA Sequence BC037032	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39321627-6	chr10	39321083	39322083	+	924.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48216.0	NM_001122892	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17393129-3	chr16	17392655	17393655	+	924.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001983, intron 1 of 54)	intron (NM_001001983, intron 1 of 54)	-12845.0	NM_023348	67474.0	Mm.271992	NM_023348	ENSMUSG00000022765	Snap29	1300018G05Rik|AI891940|AU020222|BB131856|Gs32	synaptosomal-associated protein 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128124158-4	chr2	128123643	128124643	+	924.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028765)	TTS (NM_028765)	-1895.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	2.0	0.0	0.5	0.0	0.5	0.0
Merged-chr3-88488518-4	chr3	88488016	88489016	+	924.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002011, intron 1 of 11)	intron (NM_001002011, intron 1 of 11)	4796.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-62218250-4	chr14	62217752	62218752	+	924.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74727.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93682542-2	chr16	93682042	93683042	+	924.916626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173047)	promoter-TSS (NM_173047)	-677.0	NM_173047	109857.0	Mm.4512	NM_173047	ENSMUSG00000022947	Cbr3	1110001J05Rik|C81353	carbonyl reductase 3	protein-coding	10.5	9.0	7.5	9.0	7.0	7.5
Merged-chr4-136129547-4	chr4	136129046	136130046	+	924.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-14276.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	9.5	7.0	12.5	4.5	20.0	5.5
Merged-chr17-69075700-4	chr17	69075193	69076193	+	924.8916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355732)	promoter-TSS (NM_001355732)	16.0	NM_001355732	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-65151948-4	chr6	65151448	65152448	+	924.8916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-7218.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88207573-3	chr8	88206973	88207973	+	924.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164499, intron 2 of 11)	L1MD2|LINE|L1	8260.0	NM_001164498	214627.0	Mm.491211	NM_001164497	ENSMUSG00000036779	Papd5	5730445M16Rik|5830428A09	PAP associated domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43565613-4	chr13	43565102	43566102	+	924.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5411.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	2.0	13.5	8.5	9.5	5.0	3.5
Merged-chr1-72236576-4	chr1	72236116	72237116	+	924.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7377.0	NR_155355	320933.0	Mm.440953	NR_155355		D230017M19Rik	B930094L07Rik	RIKEN cDNA D230017M19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113749267-4	chr6	113748735	113749735	+	924.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001036684, intron 19 of 19)	intron (NM_001036684, intron 19 of 19)	-8554.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95557531-4	chr9	95557018	95558018	+	924.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2299.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	1.5	25.5	23.5	19.0	20.0	9.5
Merged-chr9-105139393-4	chr9	105138908	105139908	+	924.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5674.0	NM_028562	73532.0	Mm.23516	NM_028562	ENSMUSG00000032566	1700080E11Rik	AI429110|Tseg8	RIKEN cDNA 1700080E11 gene	protein-coding	15.5	7.0	3.0	13.5	20.5	17.5
Merged-chr9-35114014-4	chr9	35113546	35114546	+	924.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-2682.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59951091-4	chr15	59950594	59951594	+	924.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	65524.0	NM_027668	71088.0	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119848016-4	chr8	119847492	119848492	+	924.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7413.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-144471264-4	chr7	144470764	144471764	+	924.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007803)	promoter-TSS (NM_007803)	-329.0	NM_001252572	13043.0	Mm.205601	NM_007803	ENSMUSG00000031078	Cttn	1110020L01Rik|Ems1	cortactin	protein-coding	33.0	13.5	13.0	38.0	11.5	10.5
Merged-chr7-80636283-2	chr7	80635783	80636783	+	924.833374	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040343, exon 2 of 5)	non-coding (NR_040343, exon 2 of 5)	266.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	2.5	8.5	5.5	5.5	5.0	1.5
Merged-chr14-30695786-4	chr14	30695296	30696296	+	924.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19053.0	NM_019460	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	8.5	23.0	24.0	35.0	34.0	39.5
Merged-chr7-127077133-4	chr7	127076631	127077631	+	924.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14305.0	NM_178901	101602.0	Mm.490357	NM_178901	ENSMUSG00000045165	AI467606	-	expressed sequence AI467606	protein-coding	1.0	3.0	0.0	12.5	6.5	2.0
Merged-chr2-33871582-3	chr2	33871106	33872106	+	924.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 2 of 9)	intron (NM_175184, intron 2 of 9)	16340.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152105597-4	chr3	152105107	152106107	+	924.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016867, intron 4 of 5)	intron (NM_016867, intron 4 of 5)	60293.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92708410-4	chr1	92707900	92708900	+	924.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59559.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133614595-4	chr4	133614069	133615069	+	924.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017968, intron 3 of 7)	intron (NM_001017968, intron 3 of 7)	-12401.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	5.5	28.0	27.5	84.5	104.0	143.0
Merged-chr8-43351163-4	chr8	43350662	43351662	+	924.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44153.0	NM_009556	22702.0	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	0.0	2.5	11.5	4.0	7.0	7.5
Merged-chr9-118723181-3	chr9	118722703	118723703	+	924.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	ORR1D2|LTR|ERVL-MaLR	11511.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	6.5	5.5	12.5	5.5	5.5	14.5
Merged-chr4-105242649-3	chr4	105242165	105243165	+	924.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	85318.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	1.0	8.0	5.5	1.0	8.0	1.0
Merged-chr9-106367183-4	chr9	106366701	106367701	+	924.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1431.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	26.0	81.0	44.5	37.0	40.5	36.0
Merged-chr19-55708116-4	chr19	55707594	55708594	+	924.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5890.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25982793-2	chr2	25982293	25983293	+	924.7999880000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_001276361, exon 1 of 18)	exon (NM_001276361, exon 1 of 18)	489.0	NM_001276360	227634.0	Mm.36834	NM_001115076	ENSMUSG00000026933	Camsap1	9530003A05Rik|C77823|PRO2405	calmodulin regulated spectrin-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6376126-4	chr4	6375623	6376623	+	924.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	10443.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0.0	0.5	2.5	2.0	0.0	3.5
Merged-chr11-57686336-4	chr11	57685825	57686825	+	924.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134189, intron 1 of 11)	intron (NM_134189, intron 1 of 11)	-36831.0	NR_153850	78762.0	Mm.362149	NR_153850		4933424L21Rik	-	RIKEN cDNA 4933424L21 gene	ncRNA	16.0	13.0	19.5	7.0	11.5	25.0
Merged-chr4-62674080-5	chr4	62673471	62674471	+	924.7800289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310706)	promoter-TSS (NM_001310706)	-3.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129861571-3	chr4	129861049	129862049	+	924.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40841.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	27.0	42.0	65.5	11.5	3.5	7.5
Merged-chr7-45638865-3	chr7	45638346	45639346	+	924.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152217)	promoter-TSS (NR_152217)	-88.0	NR_152217	100126243.0	Mm.440600	NR_152217	ENSMUSG00000110357	A030001D20Rik	1110025D03Rik	RIKEN cDNA A030001D20 gene	ncRNA	2.5	2.0	8.0	3.5	5.0	3.0
Merged-chr17-57059568-3	chr17	57059086	57060086	+	924.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025877, exon 1 of 10)	exon (NM_025877, exon 1 of 10)	277.0	NM_025877	66972.0	Mm.23720	NM_025877	ENSMUSG00000046329	Slc25a23	2310067G05Rik|SCaMC-3	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88198448-2	chr8	88197948	88198948	+	924.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164497)	promoter-TSS (NM_001164497)	-765.0	NM_001164499	214627.0	Mm.491211	NM_001164497	ENSMUSG00000036779	Papd5	5730445M16Rik|5830428A09	PAP associated domain containing 5	protein-coding	2.5	4.5	2.5	5.5	5.0	3.5
Merged-chr12-40548020-4	chr12	40547514	40548514	+	924.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	101961.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172331775-4	chr1	172331269	172332269	+	924.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2447.0	NM_001360808	16524.0	Mm.261168	NM_008429	ENSMUSG00000038026	Kcnj9	1700085N21Rik|Girk3|Kir3.3|mbGIRK3	potassium inwardly-rectifying channel, subfamily J, member 9	protein-coding	10.0	26.0	25.0	31.0	63.0	19.5
Merged-chr16-52039049-2	chr16	52038549	52039549	+	924.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 2 of 17)	intron (NM_001033238, intron 2 of 17)	7500.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43017664-4	chr17	43017181	43018181	+	924.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 1 of 5)	intron (NM_178589, intron 1 of 5)	1126.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	24.5	57.0	45.0	26.0	77.5	92.5
Merged-chr13-23401812-4	chr13	23401320	23402320	+	924.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	22046.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92477179-4	chr5	92476687	92477687	+	924.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 2 of 11)	IAPEz-int|LTR|ERVK	18630.0	NR_105843	102466159.0		NR_105843	ENSMUSG00000099160	Mir6415	Gm27714|mmu-mir-6415	microRNA 6415	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167685370-4	chr2	167684876	167685876	+	924.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3539.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110472289-4	chr11	110471776	110472776	+	924.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	-6239.0	NM_001356347	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	7.0	8.0	21.0	0.5	15.5	1.0
Merged-chr10-37137933-6	chr10	37137429	37138429	+	924.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008538, intron 1 of 1)	intron (NM_008538, intron 1 of 1)	997.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	11.5	42.5	28.0	11.5	40.5	29.5
Merged-chr12-3852700-3	chr12	3852268	3853268	+	924.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 3 of 22)	intron (NM_007872, intron 3 of 22)	9476.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8502616-4	chr12	8502101	8503101	+	924.712524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2592.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	34.0	84.5	78.0	40.5	97.5	68.5
Merged-chr2-35214952-4	chr2	35214443	35215443	+	924.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13823.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126707877-4	chr7	126707390	126708390	+	924.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3074.0	NM_009898	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98153068-4	chr15	98152564	98153564	+	924.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170711, intron 1 of 3)	intron (NM_001170711, intron 1 of 3)	-7362.0	NM_001170710	78541.0	Mm.200766	NM_030121	ENSMUSG00000048175	Asb8	4930539L19Rik|AI788835|C430011H06Rik	ankyrin repeat and SOCS box-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22545255-4	chr16	22544771	22545771	+	924.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346673, intron 19 of 23)	intron (NM_001346673, intron 19 of 23)	-13087.0	NR_106170	102465887.0		NR_106170	ENSMUSG00000099071	Mir8095	Gm27566|mmu-mir-8095	microRNA 8095	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55240781-4	chr11	55240290	55241290	+	924.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36450.0	NM_153139	215335.0	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80089438-4	chr11	80088983	80089983	+	924.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029856)	promoter-TSS (NM_001029856)	83.0	NM_001029856	237877.0	Mm.89551	NM_001029856	ENSMUSG00000017550	Atad5	C130052G03Rik|FRAG1|Gm17	ATPase family, AAA domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-57393077-3	chr1	57392586	57393586	+	924.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037742, intron 5 of 7)	intron (NM_001037742, intron 5 of 7)	-13462.0	NM_001081181	68115.0	Mm.275428	NM_001081181	ENSMUSG00000025971	Maip1	9430016H08Rik|AA409999|C78988	matrix AAA peptidase interacting protein 1	protein-coding	6.5	28.0	16.0	3.0	17.5	11.0
Merged-chr16-31929077-3	chr16	31928597	31929597	+	924.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4754.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-39639879-4	chr8	39639424	39640424	+	924.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113326, intron 1 of 9)	intron (NM_001113326, intron 1 of 9)	2754.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	29.0	82.0	73.0	70.5	111.0	51.5
Merged-chr14-30763142-4	chr14	30762637	30763637	+	924.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166531, intron 2 of 21)	MTD|LTR|ERVL-MaLR	47522.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	16.5	13.0	26.0	12.0	25.5	25.5
Merged-chr12-115617321-3	chr12	115617005	115618005	+	924.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78289.0	NR_105810	102465205.0		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3475920-3	chr2	3475366	3476366	+	924.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022724)	promoter-TSS (NM_022724)	-880.0	NR_027509	64707.0	Mm.23483	NM_022724	ENSMUSG00000026646	Suv39h2	4930507K23Rik|AA536750|D030054H19Rik|D2Ertd544e|KMT1B	suppressor of variegation 3-9 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-164081130-3	chr1	164080653	164081653	+	924.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011346)	TTS (NM_011346)	19077.0	NM_011346	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58616197-3	chr15	58615691	58616691	+	924.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	200723.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34908738-3	chr8	34908282	34909282	+	924.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 3 of 26)	intron (NM_175091, intron 3 of 26)	56908.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	13.0	0.5	3.0	2.0	0.5	3.0
Merged-chr7-101838353-2	chr7	101837853	101838853	+	924.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122739)	promoter-TSS (NM_001122739)	-127.0	NM_010567	16332.0	Mm.476000	NM_010567	ENSMUSG00000032737	Inppl1	51C|SHIP2	inositol polyphosphate phosphatase-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99139773-2	chr15	99139273	99140273	+	924.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_139140, intron 1 of 12)	intron (NM_139140, intron 1 of 12)	12928.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158138015-4	chr2	158137515	158138515	+	924.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 3 of 12)	intron (NM_009373, intron 3 of 12)	8377.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155494604-4	chr1	155494097	155495097	+	924.645874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32514.0	NR_132128	433367.0	Mm.359304	NR_132128	ENSMUSG00000073535	Gm5532	EG433367	predicted gene 5532	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114651568-4	chr5	114651038	114652038	+	924.636902	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022017, intron 1 of 15)	intron (NM_022017, intron 1 of 15)	6883.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0.0	0.5	6.0	8.5	8.5	16.0
Merged-chr8-10911219-4	chr8	10910685	10911685	+	924.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11263.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-131264372-4	chr6	131263874	131264874	+	924.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17012.0	NM_008462	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	15.5	20.0	5.5	11.5	14.5	4.0
Merged-chr16-44811749-4	chr16	44811251	44812251	+	924.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8977.0	NM_207244	239849.0	Mm.445045	NM_207244	ENSMUSG00000062082	Cd200r4	F630107N04Rik|MCD200RLa	CD200 receptor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81268902-2	chr10	81268402	81269402	+	924.625	f1_balb.idr|f1_c57bl6.idr	exon (NM_018758, exon 2 of 11)	exon (NM_018758, exon 2 of 11)	730.0	NM_018758	57267.0	Mm.293931	NM_018758	ENSMUSG00000004931	Apba3	AW208791|Mint-3|X11gamma|lin-10|mint3	amyloid beta (A4) precursor protein-binding, family A, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108284612-4	chr9	108284109	108285109	+	924.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5848.0	NM_025449	66257.0	Mm.10407	NM_025449	ENSMUSG00000032606	Nicn1	1500032A17Rik	nicolin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51796573-4	chr3	51796062	51797062	+	924.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	135383.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-45934889-4	chr8	45934407	45935407	+	924.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033246, intron 1 of 6)	intron (NM_001033246, intron 1 of 6)	258.0	NM_001033246	212392.0	Mm.296649	NM_001033246	ENSMUSG00000071104	Ccdc110	Gm172	coiled-coil domain containing 110	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-99667445-4	chr6	99666938	99667938	+	924.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025829)	promoter-TSS (NM_025829)	-667.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-48592518-3	chr4	48591967	48592967	+	924.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021436, intron 1 of 9)	intron (NM_021436, intron 1 of 9)	7293.0	NM_021436	230157.0	Mm.422686	NM_021436	ENSMUSG00000028347	Tmeff1	A830033E11|M7365|TR-1|Tr1	transmembrane protein with EGF-like and two follistatin-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70892845-3	chr8	70892279	70893279	+	924.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053248)	promoter-TSS (NM_053248)	-22.0	NM_053248	114479.0	Mm.172923	NM_053248	ENSMUSG00000000792	Slc5a5	NIS	solute carrier family 5 (sodium iodide symporter), member 5	protein-coding	5.0	1.5	12.0	6.5	12.5	1.0
Merged-chr16-23983391-2	chr16	23982891	23983891	+	924.5833130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_009744, intron 1 of 9)	CpG	-2108.0	NM_001348026	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-59559203-4	chr16	59558713	59559713	+	924.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3461.0	NM_174848	224273.0	Mm.246424	NM_174848	ENSMUSG00000022723	Crybg3	5031404N19|AU022790|Gm9581	beta-gamma crystallin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17796514-4	chr16	17796011	17797011	+	924.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153790)	promoter-TSS (NM_153790)	-771.0	NM_153790	224024.0	Mm.194950	NM_153790	ENSMUSG00000012017	Scarf2	NSR1|SREC-II|SRECRP-1|Scatf1|Srec2|SrecII	scavenger receptor class F, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22530890-4	chr9	22530407	22531407	+	924.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360259, intron 5 of 22)	intron (NM_001360259, intron 5 of 22)	55192.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54391124-3	chr14	54390616	54391616	+	924.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	L1_Mur3|LINE|L1	18356.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	4.0	16.0	14.5	23.0	47.5	58.5
Merged-chr18-65534254-3	chr18	65533684	65534684	+	924.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 1 of 6)	intron (NR_105742, intron 1 of 6)	-46046.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	0.0	2.5	3.5	0.0	1.5	16.0
Merged-chr10-122882797-4	chr10	122882294	122883294	+	924.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 6 of 9)	intron (NM_001110218, intron 6 of 9)	102930.0	NR_029527	387251.0		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	0.0	2.0	5.5	2.5	5.5	4.5
Merged-chr6-8345796-4	chr6	8345420	8346420	+	924.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302354, intron 2 of 3)	(GGGA)n|Simple_repeat|Simple_repeat	86632.0	NM_001302353	100036521.0	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119378785-4	chr11	119378258	119379258	+	924.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178743, intron 15 of 16)	intron (NM_178743, intron 15 of 16)	-11714.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29355050-4	chr19	29354530	29355530	+	924.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026362, intron 3 of 5)	intron (NM_026362, intron 3 of 5)	6841.0	NM_026362	67759.0	Mm.275511	NM_026362	ENSMUSG00000016495	Plgrkt	1110007H22Rik|5033414D02Rik|AI852040|Plg-R(KT)|Plg-RKT	plasminogen receptor, C-terminal lysine transmembrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72109714-4	chr6	72109218	72110218	+	924.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	12110.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-56063367-4	chr8	56062866	56063866	+	924.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080438, intron 5 of 9)	intron (NM_080438, intron 5 of 9)	122541.0	NM_080438	110304.0	Mm.307061	NM_080438	ENSMUSG00000038257	Glra3	-	glycine receptor, alpha 3 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35749994-4	chr17	35749499	35750499	+	924.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22451.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	41.5	115.5	69.0	0.0	14.5	17.5
Merged-chr3-35732441-4	chr3	35731921	35732921	+	924.537476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-21642.0	NR_151626	76295.0	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10456923-3	chr19	10456450	10457450	+	924.5277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001111140, exon 1 of 1)	exon (NM_001111140, exon 1 of 1)	497.0	NM_001111140	278795.0	Mm.490638	NM_001111140	ENSMUSG00000090291	Lrrc10b	Gm705|SerdinR	leucine rich repeat containing 10B	protein-coding	0.0	2.0	0.5	0.0	3.0	0.0
Merged-chr2-124599182-4	chr2	124598683	124599683	+	924.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-11113.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-98204316-2	chr4	98203816	98204816	+	924.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	178949.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-39974319-2	chr15	39973819	39974819	+	924.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11670.0	NR_045719	105976.0	Mm.394885	NR_045719		AU022793	-	expressed sequence AU022793	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116015575-2	chr11	116015075	116016075	+	924.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-2856.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	1.0	0.0	0.0	0.0	0.5	0.0
Merged-chr9-21446407-4	chr9	21445889	21446889	+	924.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 1 of 19)	intron (NM_001357721, intron 1 of 19)	21481.0	NM_001357719	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64391628-2	chr7	64391128	64392128	+	924.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355124)	promoter-TSS (NM_001355124)	608.0	NM_026483	67973.0	Mm.26973	NM_026483	ENSMUSG00000030521	Mphosph10	2810453H10Rik|5730405D16Rik|AI326008	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	protein-coding	3.0	14.5	32.5	1.0	16.0	18.0
Merged-chr17-71223920-2	chr17	71223420	71224420	+	924.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357791, intron 3 of 19)	MTD|LTR|ERVL-MaLR	19266.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	5.0	6.5	7.5	7.5	6.5	3.5
Merged-chr8-71275437-2	chr8	71274937	71275937	+	924.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 1 of 39)	intron (NM_001142322, intron 1 of 39)	2723.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	1.5	11.0	0.0	3.0	0.0	3.0
Merged-chr11-74896187-2	chr11	74895687	74896687	+	924.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_197943, intron 1 of 22)	intron (NM_197943, intron 1 of 22)	893.0	NM_197943	97761.0	Mm.245894	NM_197943	ENSMUSG00000038351	Sgsm2	D630003G22Rik|R74628|Rutbc1|mKIAA0397	small G protein signaling modulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45269071-3	chr13	45268557	45269557	+	924.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120685.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77368335-4	chr15	77367839	77368839	+	924.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30771.0	NM_029419	75761.0	Mm.232636	NM_029419	ENSMUSG00000010601	Apol7a	9130022K13Rik|Apol3	apolipoprotein L 7a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34006509-2	chr18	34006009	34007009	+	924.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013512, intron 1 of 23)	CpG-6813	697.0	NM_013512	13824.0	Mm.3465	NM_013512	ENSMUSG00000024376	Epb41l4a	Epb4.1l4|Epb4.1l4a|NBL4	erythrocyte membrane protein band 4.1 like 4a	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr7-28803159-2	chr7	28802659	28803659	+	924.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7731.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127539454-2	chr10	127538950	127539950	+	924.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 87 of 88)	intron (NM_008512, intron 87 of 88)	-4891.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	2.0	2.0	4.0	2.0	0.5	3.0
Merged-chr10-118162903-1	chr10	118162403	118163403	+	924.5	f0_balb.idr	intron (NM_001162904, intron 12 of 14)	intron (NM_001162904, intron 12 of 14)	21116.0	NM_010785	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	12.0	0.0	2.0	21.5	46.5	19.5
Merged-chr13-96011290-4	chr13	96010729	96011729	+	924.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029210, intron 4 of 12)	intron (NM_029210, intron 4 of 12)	-119307.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0.5	0.0	5.5	0.0	6.0	2.0
Merged-chr9-108048153-2	chr9	108047653	108048653	+	924.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013785, exon 6 of 6)	3' UTR (NM_013785, exon 6 of 6)	-1111.0	NM_177910	331026.0	Mm.22554	NM_177910	ENSMUSG00000070284	Gmppb	AI317178|E430010H19	GDP-mannose pyrophosphorylase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-54811901-2	chr3	54811401	54812401	+	924.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4110.0	NM_133231	170767.0	Mm.185735	NM_133231	ENSMUSG00000036615	Rfxap	5730495K23Rik	regulatory factor X-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73546362-2	chr12	73545862	73546862	+	924.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178715)	promoter-TSS (NM_178715)	33.0	NM_178715	238257.0	Mm.251196	NM_178715	ENSMUSG00000034435	Tmem30b	9130011B11Rik	transmembrane protein 30B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18425410-2	chr16	18424910	18425910	+	924.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111062, intron 1 of 5)	MER67A|LTR|ERV1	-1007.0	NM_001353143	26462.0	Mm.390906	NM_013711	ENSMUSG00000075704	Txnrd2	AA118373|ESTM573010|TGR|Tr3|Trxr2|Trxrd2	thioredoxin reductase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-51982048-1	chr7	51981548	51982548	+	924.5	f0_balb.idr	intron (NM_001330607, intron 7 of 7)	intron (NM_001330607, intron 7 of 7)	23666.0	NR_027704	75744.0	Mm.386823	NM_001160345	ENSMUSG00000074093	Svip	1700006C13Rik|6620401M08Rik	small VCP/p97-interacting protein	protein-coding	0.0	0.0	0.0	0.5	1.0	0.0
Merged-chr2-167933334-2	chr2	167932834	167933834	+	924.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	1007.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-149381923-2	chr6	149381423	149382423	+	924.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR21|LTR|ERVK	-27061.0	NM_001112796	12121.0	Mm.177181	NM_009753	ENSMUSG00000003452	Bicd1	B830009D06Rik|bic-D 1	BICD cargo adaptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66080707-2	chr5	66080207	66081207	+	924.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	17472.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9991469-4	chr19	9990949	9991949	+	924.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011913, intron 6 of 11)	ID_B1|SINE|B4	8803.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	3.5	3.5	7.0	1.0	1.5	2.0
Merged-chr11-22617725-4	chr11	22617276	22618276	+	924.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105493.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	0.0	1.5	2.0	0.0	1.5	2.0
Merged-chr2-19120111-4	chr2	19119626	19120626	+	924.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78992.0	NM_001271563	70882.0	Mm.276696	NM_001081083	ENSMUSG00000037683	Armc3	4921513G22Rik	armadillo repeat containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93888540-6	chr16	93888018	93889018	+	924.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028083, intron 5 of 13)	intron (NM_028083, intron 5 of 13)	4617.0	NM_028083	110749.0	Mm.274222	NM_028083	ENSMUSG00000022945	Chaf1b	2600017H24Rik|C76145|CAF-I p60|CAF-Ip60|CAF1|CAF1A|CAF1P60|MPHOSPH7	chromatin assembly factor 1, subunit B (p60)	protein-coding	1.5	19.5	29.5	0.0	3.0	4.5
Merged-chr9-62857427-3	chr9	62856944	62857944	+	924.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102468)	promoter-TSS (NM_001102468)	-660.0	NM_001102468	75600.0	Mm.440576	NM_138304	ENSMUSG00000032246	Calml4	2010002G05Rik	calmodulin-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47509148-3	chr17	47508626	47509626	+	924.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	4075.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126194340-4	chr7	126193838	126194838	+	924.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 1 of 23)	intron (NM_028816, intron 1 of 23)	6163.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-69509758-4	chr13	69509262	69510262	+	924.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198600, intron 5 of 12)	B2_Mm2|SINE|B2	24102.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	0.0	7.0	1.5	3.5	6.5	5.5
Merged-chr5-72235181-3	chr5	72234669	72235669	+	924.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 3 of 22)	intron (NR_003966, intron 3 of 22)	31826.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50132321-2	chr11	50131821	50132821	+	924.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029745, intron 1 of 20)	intron (NM_029745, intron 1 of 20)	961.0	NM_029745	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91737067-4	chr16	91736608	91737608	+	924.3916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	7737.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-41157251-12	chr9	41156498	41157498	+	924.3784789999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	CpG	1064.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	5.0	0.0	1.0	0.0	5.5	0.0
Merged-chr17-27028049-4	chr17	27027591	27028591	+	924.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149749, intron 1 of 6)	intron (NR_149749, intron 1 of 6)	536.0	NM_007523	12018.0	Mm.2443	NM_007523	ENSMUSG00000057789	Bak1	Bak|N-BAK1|N-Bak	BCL2-antagonist/killer 1	protein-coding	28.5	41.5	48.0	27.0	70.5	39.0
Merged-chr3-121307750-4	chr3	121307224	121308224	+	924.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024178, intron 2 of 3)	intron (NM_024178, intron 2 of 3)	15984.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	4.0	1.5	4.0	0.0	3.0	2.5
Merged-chr12-70227003-4	chr12	70226546	70227546	+	924.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045174)	promoter-TSS (NR_045174)	637.0	NM_133198	110095.0	Mm.256926	NM_133198	ENSMUSG00000021069	Pygl	-	liver glycogen phosphorylase	protein-coding	3.5	3.5	5.5	0.0	4.0	2.0
Merged-chr15-38485654-4	chr15	38485159	38486159	+	924.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4888.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67374131-4	chr7	67373612	67374612	+	924.3583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1254.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34416080-4	chr18	34415580	34416580	+	924.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016927, intron 4 of 14)	intron (NM_016927, intron 4 of 14)	6657.0	NM_016927	53871.0	Mm.445792	NM_016927	ENSMUSG00000014503	Pkd2l2	TRPP5	polycystic kidney disease 2-like 2	protein-coding	6.5	3.5	14.5	5.0	6.0	5.0
Merged-chr4-133729625-3	chr4	133729080	133730080	+	924.3388669999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080819, intron 1 of 19)	intron (NM_001080819, intron 1 of 19)	-12472.0	NR_106086	102465707.0		NR_106086	ENSMUSG00000104566	Mir7227	mmu-mir-7227	microRNA 7227	ncRNA	16.5	29.0	21.5	14.0	10.0	22.5
Merged-chr17-35253367-2	chr17	35252914	35253914	+	924.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019693, intron 10 of 10)	(TG)n|Simple_repeat|Simple_repeat	2125.0	NR_106169	102465886.0		NR_106169	ENSMUSG00000098269	Mir8094	Gm27513|mmu-mir-8094	microRNA 8094	ncRNA	2.5	2.5	0.0	0.0	0.5	1.5
Merged-chr7-17026483-2	chr7	17025983	17026983	+	924.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011155, intron 1 of 12)	L2b|LINE|L2	1431.0	NM_011155	19060.0	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	23.0	57.0	44.5	19.0	66.0	49.0
Merged-chr10-41580032-3	chr10	41579550	41580550	+	924.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 35 of 47)	intron (NM_001358562, intron 35 of 47)	12034.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-82881931-3	chr6	82881424	82882424	+	924.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040520)	promoter-TSS (NR_040520)	-71.0	NR_040520	69652.0	Mm.96357	NR_040520	ENSMUSG00000100291	2310069B03Rik	-	RIKEN cDNA 2310069B03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153131466-2	chr2	153130966	153131966	+	924.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 6 of 12)	intron (NM_001172117, intron 6 of 12)	22998.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166675608-3	chr2	166675118	166676118	+	924.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	38214.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107739049-2	chr9	107738549	107739549	+	924.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28574.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11777403-3	chr11	11776902	11777902	+	924.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31560.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	1.0	1.5	0.0	0.0	4.5	1.0
Merged-chr2-45116051-7	chr2	45115436	45116436	+	924.31427	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355288, intron 1 of 10)	intron (NM_001355288, intron 1 of 10)	1506.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58269027-4	chr9	58268546	58269546	+	924.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	15882.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47506825-4	chr14	47506330	47507330	+	924.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027414, intron 2 of 5)	intron (NR_027414, intron 2 of 5)	34269.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	59.5	105.5	65.0	26.5	19.0	9.5
Merged-chr14-31414898-4	chr14	31414403	31415403	+	924.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	2774.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100006040-4	chr12	100005537	100006537	+	924.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	Charlie2b|DNA|hAT-Charlie	41538.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136946441-4	chr6	136945943	136946943	+	924.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4544.0	NM_001301309	11857.0	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	13.0	11.5	8.5	10.5	0.5	10.0
Merged-chr8-79501425-4	chr8	79500914	79501914	+	924.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101946.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-30975554-4	chr3	30975058	30976058	+	924.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6143.0	NM_001165956	241915.0	Mm.233173	NM_153421	ENSMUSG00000037652	Phc3	E030046K01Rik|Edr3|Hph3	polyhomeotic 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8660987-4	chr11	8660475	8661475	+	924.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	B1F|SINE|Alu	3560.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	26.5	96.5	69.0	69.5	93.0	97.0
Merged-chr16-73908644-3	chr16	73908139	73909139	+	924.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358493, intron 25 of 28)	intron (NM_001358493, intron 25 of 28)	433428.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50213641-4	chr11	50213141	50214141	+	924.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2821.0	NM_011018	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40631458-4	chr19	40630974	40631974	+	924.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	19108.0	NM_001304721	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	44.0	91.5	83.5	26.5	60.5	95.5
Merged-chr12-102517841-4	chr12	102517358	102518358	+	924.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37083.0	NM_007693	12652.0	Mm.4137	NM_007693	ENSMUSG00000021194	Chga	ChrA|cgA	chromogranin A	protein-coding	6.5	0.0	11.5	1.0	2.0	11.0
Merged-chr8-84838507-2	chr8	84838007	84839007	+	924.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001297607, exon 3 of 9)	exon (NM_001297607, exon 3 of 9)	2158.0	NM_001297607	19358.0	Mm.255539	NM_009010	ENSMUSG00000003813	Rad23a	2310040P19Rik|AL024030|HR23A|mHR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-169368963-4	chr1	169368455	169369455	+	924.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	162509.0	NM_023284	66977.0	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96577468-4	chr3	96576968	96577968	+	924.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001293701)	TTS (NM_001293701)	-10667.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	6.5	64.0	36.5	19.5	91.5	52.5
Merged-chr5-134494272-6	chr5	134493708	134494708	+	924.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039162, intron 13 of 15)	intron (NM_001039162, intron 13 of 15)	-37492.0	NM_001081464	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31328007-4	chr3	31327502	31328502	+	924.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17683.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-69196958-4	chr18	69196450	69197450	+	924.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147542.0	NM_013685	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.5	17.5	3.5	0.5	5.0	0.5
Merged-chr2-167765997-2	chr2	167765497	167766497	+	924.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74820.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-68087699-3	chr7	68087195	68088195	+	924.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	135438.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	1.5	0.5	1.5	0.0	0.5	1.5
Merged-chr15-35799617-4	chr15	35799114	35800114	+	924.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177151, intron 39 of 61)	MTB|LTR|ERVL-MaLR	-138567.0	NR_030606	100124469.0		NR_030606	ENSMUSG00000077890	Mir875	Mirn875|mir-875|mmu-mir-875	microRNA 875	ncRNA	5.0	11.0	1.5	6.0	18.5	6.0
Merged-chr10-117677199-4	chr10	117676708	117677708	+	924.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027468, intron 7 of 8)	intron (NM_027468, intron 7 of 8)	33550.0	NM_010786	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.0	0.0	0.0	1.0	0.0	0.5
Merged-chr6-72377138-3	chr6	72376635	72377635	+	924.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016872, intron 1 of 2)	intron (NM_016872, intron 1 of 2)	3333.0	NM_001080742	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45122522-4	chr9	45122057	45123057	+	924.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014761, intron 1 of 3)	intron (NM_001014761, intron 1 of 3)	4681.0	NM_001014761	72821.0	Mm.229373	NM_001014761	ENSMUSG00000070304	Scn2b	2810451E09Rik|AI840361|Gm183	sodium channel, voltage-gated, type II, beta	protein-coding	0.0	0.5	3.0	0.0	0.0	0.0
Merged-chr7-83062252-4	chr7	83061747	83062747	+	924.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86223.0	NM_177895	330578.0	Mm.5796	NM_177895	ENSMUSG00000053528	A530021J07Rik	-	Riken cDNA A530021J07 gene	protein-coding	8.5	10.0	18.0	15.0	30.5	17.5
Merged-chr2-167839435-4	chr2	167838937	167839937	+	924.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92890.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36325288-4	chr15	36324766	36325766	+	924.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR24B_MM|LTR|ERV1	-42119.0	NM_001357631	30945.0	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69415141-4	chr11	69414729	69415729	+	924.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1554.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41451018-2	chr10	41450518	41451518	+	924.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NR_102360, intron 1 of 6)	intron (NR_102360, intron 1 of 6)	660.0	NR_102360	268294.0	Mm.258475	NM_153398	ENSMUSG00000019826	Zbtb24	BC055367|Bif1|Bsg1|ZNF450	zinc finger and BTB domain containing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111539978-4	chr8	111539461	111540461	+	924.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168623, intron 1 of 4)	MIRc|SINE|MIR	1618.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	7.0	2.0	1.0	4.0	2.0	1.0
Merged-chr5-64202476-3	chr5	64201976	64202976	+	924.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-27881.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37232611-3	chr9	37232113	37233113	+	924.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020258, intron 17 of 17)	intron (NM_020258, intron 17 of 17)	23125.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31121800-4	chr6	31121301	31122301	+	924.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-58708.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77786963-2	chr18	77786463	77787463	+	924.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7587.0	NM_013831	19201.0	Mm.57174	NM_013831	ENSMUSG00000025429	Pstpip2	MAYP|cmo	proline-serine-threonine phosphatase-interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88330897-4	chr10	88330407	88331407	+	924.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 4 of 6)	intron (NM_027878, intron 4 of 6)	26168.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7474431-4	chr10	7473934	7474934	+	924.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029975)	promoter-TSS (NM_029975)	-957.0	NM_029975	77777.0	Mm.442442	NM_029975	ENSMUSG00000079685	Ulbp1	A430108B07Rik|MULT1	UL16 binding protein 1	protein-coding	3.0	3.0	2.0	0.0	1.5	4.0
Merged-chr5-128971705-2	chr5	128971205	128972205	+	924.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-18219.0	NM_001310733	231760.0	Mm.233996	NM_001081388	ENSMUSG00000029420	Rimbp2	A930033C01Rik|mKIAA0318	RIMS binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118649209-2	chr9	118648709	118649709	+	924.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	42500.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	31.5	62.0	47.0	31.5	63.0	42.5
Merged-chr17-57287056-2	chr17	57286556	57287556	+	924.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 1 of 25)	intron (NM_001163816, intron 1 of 25)	7956.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	16.5	14.0	18.5	9.5	13.5	15.0
Merged-chr11-77622160-4	chr11	77621673	77622673	+	924.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14358.0	NM_144825	216965.0	Mm.340436	NM_144825	ENSMUSG00000017291	Taok1	2810468K05Rik|AU020252|D130018F14Rik|Map3k16|Markk|Psk2|mKIAA1361	TAO kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75192938-4	chr11	75192391	75193391	+	924.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-1102.0	NM_177708	237847.0	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	0.0	0.5	0.0	0.0	7.0	0.5
Merged-chr17-10394914-7	chr17	10394420	10395420	+	924.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61296.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124443288-4	chr5	124442794	124443794	+	924.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310725, intron 1 of 6)	intron (NM_001310725, intron 1 of 6)	-2205.0	NM_001310723	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-52120580-2	chr1	52120080	52121080	+	924.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205314, intron 2 of 24)	intron (NM_001205314, intron 2 of 24)	958.0	NM_001205313	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40314753-3	chr10	40314258	40315258	+	924.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12570.0	NM_009665	11702.0	Mm.253533	NM_009665	ENSMUSG00000075232	Amd1	AdoMetDC|Amd-1|SAMDC|SAMDC 1|adoMetDC1	S-adenosylmethionine decarboxylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12210900-3	chr17	12210388	12211388	+	924.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026644, intron 5 of 8)	intron (NM_026644, intron 5 of 8)	91604.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	0.0	1.0	4.0	1.5	1.5	0.0
Merged-chr1-5508614-3	chr1	5508121	5509121	+	924.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-79872.0	NM_001204371	18387.0	Mm.7977	NM_011011	ENSMUSG00000025905	Oprk1	K-OR-1|KOR|KOR-1|MSL-1|Oprk2|R21	opioid receptor, kappa 1	protein-coding	7.0	0.5	2.5	2.5	13.0	8.0
Merged-chr1-7114088-4	chr1	7113583	7114583	+	924.1083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183028, intron 1 of 5)	MLTR14|LTR|ERV1	25163.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53386914-4	chr15	53386405	53387405	+	924.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40722.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75136857-4	chr14	75136356	75137356	+	924.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	431.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59525213-4	chr15	59524639	59525639	+	924.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-123515.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-99791030-3	chr13	99790533	99791533	+	924.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	109650.0	NM_013732	27220.0	Mm.75498	NM_013732	ENSMUSG00000021647	Cartpt	Cart	CART prepropeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27220213-4	chr7	27219701	27220701	+	924.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181593, intron 1 of 6)	intron (NM_181593, intron 1 of 6)	8396.0	NM_181593	233011.0	Mm.30963	NM_181593	ENSMUSG00000003752	Itpkc	9130023N17Rik	inositol 1,4,5-trisphosphate 3-kinase C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43557275-3	chr13	43556755	43557755	+	924.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081059, intron 1 of 8)	intron (NM_001081059, intron 1 of 8)	2936.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	1.0	3.0	0.5	0.5	1.5	7.5
Merged-chr17-34312427-4	chr17	34311907	34312907	+	924.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010382, intron 2 of 5)	intron (NM_010382, intron 2 of 5)	6540.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	82.5	217.5	159.0	33.5	89.5	47.5
Merged-chr2-30135086-4	chr2	30134585	30135585	+	924.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146252, intron 2 of 11)	intron (NM_146252, intron 2 of 11)	1339.0	NM_146252	70296.0	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81934172-4	chr15	81933672	81934672	+	924.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2587.0	NM_145473	105859.0	Mm.22524	NM_145473	ENSMUSG00000042109	Csdc2	AI415250|AI481750|Pippin	cold shock domain containing C2, RNA binding	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-9772939-4	chr1	9772444	9773444	+	924.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24562.0	NM_173443	70675.0	Mm.274493	NM_173443	ENSMUSG00000045210	Vcpip1	4932442A08|5730421J18Rik|5730538E15Rik|VCIP135|mKIAA1850	valosin containing protein (p97)/p47 complex interacting protein 1	protein-coding	4.5	1.5	0.5	0.0	0.0	0.5
Merged-chr19-6872804-4	chr19	6872339	6873339	+	924.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-14628.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-83647634-2	chr10	83647134	83648134	+	924.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145220, intron 1 of 20)	(CAAA)n|Simple_repeat|Simple_repeat	1030.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-41042425-3	chr3	41041924	41042924	+	924.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	40622.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132573928-3	chr4	132573464	132574464	+	924.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081211, intron 1 of 1)	(TG)n|Simple_repeat|Simple_repeat	9897.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65382274-2	chr9	65381774	65382774	+	924.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9378.0	NM_028974	74492.0	Mm.159223	NM_028974	ENSMUSG00000054978	Kbtbd13	5430433E21Rik	kelch repeat and BTB (POZ) domain containing 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54981772-2	chr12	54981272	54982272	+	924.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013815, intron 2 of 26)	intron (NM_013815, intron 2 of 26)	4564.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-23142528-2	chr19	23142023	23143023	+	924.0	f0_balb.idr|f0_c57.idr	intron (NM_010638, intron 1 of 1)	CpG	1297.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83408387-3	chr15	83407864	83408864	+	924.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358643, intron 1 of 9)	MTEb|LTR|ERVL-MaLR	24486.0	NM_011862	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-52281793-2	chr14	52281293	52282293	+	924.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023434, intron 3 of 9)	intron (NM_023434, intron 3 of 9)	-2398.0	NM_172601	76338.0	Mm.32870	NM_172601	ENSMUSG00000022159	Rab2b	1500012D09Rik|4930528G15Rik|A230002G14|D530043M21Rik	RAB2B, member RAS oncogene family	protein-coding	5.0	12.5	10.5	16.5	3.5	1.0
Merged-chr11-118396291-2	chr11	118395791	118396791	+	924.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011150, intron 5 of 5)	intron (NM_011150, intron 5 of 5)	5668.0	NM_011150	19039.0	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81235299-3	chr7	81234802	81235802	+	924.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 1 of 21)	intron (NM_008803, intron 1 of 21)	21498.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11156992-3	chr4	11156483	11157483	+	924.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199105, intron 1 of 4)	intron (NM_001199105, intron 1 of 4)	542.0	NM_021897	60599.0	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap|p53DINP1	transformation related protein 53 inducible nuclear protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157944069-2	chr2	157943569	157944569	+	924.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_198627, exon 4 of 4)	exon (NM_198627, exon 4 of 4)	29416.0	NM_198627	277432.0	Mm.441156	NM_198627	ENSMUSG00000037843	Vstm2l	Gm691	V-set and transmembrane domain containing 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90488429-3	chr2	90487932	90488932	+	924.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	B3|SINE|B2	-9258.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	78.0	196.0	124.5	43.0	136.0	121.5
Merged-chr2-156862243-4	chr2	156861766	156862766	+	924.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026124)	promoter-TSS (NM_026124)	679.0	NR_015591	74487.0	Mm.490465	NR_015591	ENSMUSG00000085741	5430405H02Rik	2610307N17Rik	RIKEN cDNA 5430405H02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76722280-3	chr15	76721787	76722787	+	924.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198119)	promoter-TSS (NM_198119)	-114.0	NM_198119	378937.0	Mm.289666	NM_198119	ENSMUSG00000033707	Lrrc24	6430402H13Rik	leucine rich repeat containing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85094171-3	chr12	85093667	85094667	+	924.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001361239, exon 1 of 5)	exon (NM_001361239, exon 1 of 5)	1448.0	NM_001361239	73422.0	Mm.311944	NM_175198	ENSMUSG00000042320	Prox2	1700058C01Rik	prospero homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104501852-2	chr3	104501352	104502352	+	924.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025067, intron 1 of 17)	ORR1E|LTR|ERVL-MaLR	10066.0	NM_001025067	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	5.5	5.0	1.5	0.5	4.5	2.0
Merged-chr6-16842693-3	chr6	16842192	16843192	+	924.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 4 of 6)	intron (NM_031198, intron 4 of 6)	55749.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-33372574-3	chr5	33372086	33373086	+	924.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021500, exon 9 of 9)	3' UTR (NM_021500, exon 9 of 9)	-6110.0	NR_153108	71101.0	Mm.132178	NM_027674	ENSMUSG00000037355	Uvssa	4933407H18Rik|D330017J19Rik|Kiaa1530|mKIAA1530	UV stimulated scaffold protein A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153910607-4	chr1	153910105	153911105	+	924.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008131)	TTS (NM_008131)	10676.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-10714774-4	chr15	10714234	10715234	+	924.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166408)	promoter-TSS (NM_001166408)	-102.0	NR_045063	75259.0	Mm.33928	NR_045063	ENSMUSG00000096971	4930556M19Rik	1700009D01Rik|C130022M03Rik	RIKEN cDNA 4930556M19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120510188-4	chr8	120509659	120510659	+	924.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	21293.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-76115905-2	chr2	76115405	76116405	+	924.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081033, intron 9 of 19)	intron (NM_001081033, intron 9 of 19)	-133938.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	0.0	0.0	0.0	1.5	0.0	2.0
Merged-chr9-77819210-2	chr9	77818710	77819710	+	924.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64675.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	1.0	10.5	2.0	0.5	9.0	2.5
Merged-chr12-80180676-2	chr12	80180176	80181176	+	924.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 11 of 20)	URR1B|DNA|hAT-Charlie	-47832.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64685404-2	chr17	64684904	64685904	+	924.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 12 of 21)	intron (NM_008549, intron 12 of 21)	-81707.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92280528-1	chr5	92280028	92281028	+	924.0	f1_c57bl6.idr	Intergenic	Intergenic	-2347.0	NM_025972	67111.0	Mm.28890	NM_025972	ENSMUSG00000029413	Naaa	2210023K21Rik|3830414F09Rik|Asahl	N-acylethanolamine acid amidase	protein-coding	3.0	43.5	19.0	0.0	8.0	4.0
Merged-chr5-91960163-3	chr5	91959661	91960661	+	924.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026557, intron 1 of 8)	Charlie1a|DNA|hAT-Charlie	2395.0	NR_073442	68098.0	Mm.159453	NM_026557	ENSMUSG00000029397	Rchy1	ARNIP|CHIMP|Pirh2|Zfp363|Znf363	ring finger and CHY zinc finger domain containing 1	protein-coding	0.0	10.5	1.5	0.0	2.0	4.5
Merged-chr10-98782187-2	chr10	98781687	98782687	+	924.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132455.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-4993671-2	chr17	4993171	4994171	+	924.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1403.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-9103742-4	chr5	9103267	9104267	+	924.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081029, intron 2 of 4)	intron (NM_001081029, intron 2 of 4)	3030.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-8017436-3	chr9	8016932	8017932	+	924.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12836.0	NM_001171147	22601.0	Mm.221992	NM_009534	ENSMUSG00000053110	Yap1	AI325207|Yap|Yap65|Yki|Yorkie	yes-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125354977-6	chr6	125354512	125355512	+	924.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011609, intron 1 of 9)	intron (NM_011609, intron 1 of 9)	5289.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	12.0	14.5	16.0	5.0	8.0	13.0
Merged-chr13-5737978-2	chr13	5737478	5738478	+	924.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	120114.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4127192-2	chr19	4126692	4127692	+	924.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001078649, intron 3 of 7)	intron (NM_001078649, intron 3 of 7)	1232.0	NM_025889	66990.0	Mm.276255	NM_025889		Tmem134	2410001H17Rik|AI463452	transmembrane protein 134	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24672378-4	chr17	24671873	24672873	+	924.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348231, intron 1 of 11)	intron (NM_001348231, intron 1 of 11)	2686.0	NM_183149	213753.0	Mm.219581	NM_183149	ENSMUSG00000041130	Zfp598	BC023040|Ntrap|Znf598	zinc finger protein 598	protein-coding	3.5	7.5	12.5	5.0	2.0	18.5
Merged-chr5-92502216-2	chr5	92501716	92502716	+	924.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	3441.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-142082916-4	chr4	142082412	142083412	+	923.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-1386.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-45000988-4	chr10	45000397	45001397	+	923.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66317.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136891988-6	chr4	136891547	136892547	+	923.9722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007574, intron 2 of 2)	MIRb|SINE|MIR	867.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	184.5	377.0	338.0	213.0	334.0	233.0
Merged-chr11-115075791-3	chr11	115075389	115076389	+	923.962952	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13850.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84745758-4	chr8	84745241	84746241	+	923.962524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081982, intron 2 of 9)	intron (NM_001081982, intron 2 of 9)	28628.0	NM_001081981	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	1.5	9.0	11.5	1.5	3.0	3.5
Merged-chr7-126211110-4	chr7	126210612	126211612	+	923.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-10611.0	NM_028816	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53403951-4	chr19	53403490	53404490	+	923.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-13356.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-23555990-4	chr1	23555476	23556476	+	923.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18611.0	NR_151529	105243890.0	Mm.383635	NR_151529		Gm28822	-	predicted gene 28822	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62231578-4	chr18	62231074	62232074	+	923.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51474.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	2.0	27.0	15.5	12.0	16.0	13.0
Merged-chr8-84910139-4	chr8	84909641	84910641	+	923.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010062, intron 5 of 5)	intron (NM_010062, intron 5 of 5)	1517.0	NM_010062	13423.0	Mm.350831	NM_010062	ENSMUSG00000003812	Dnase2a	Dnase2	deoxyribonuclease II alpha	protein-coding	6.5	21.0	9.5	4.5	27.0	14.5
Merged-chr10-67187327-4	chr10	67186825	67187825	+	923.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242396, intron 1 of 24)	intron (NM_001242396, intron 1 of 24)	1575.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-15307010-4	chr9	15306548	15307548	+	923.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199484)	promoter-TSS (NM_001199484)	-600.0	NM_001199484	70984.0	Mm.261842	NM_133732	ENSMUSG00000031938	4931406C07Rik	-	RIKEN cDNA 4931406C07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-39840850-3	chr15	39840349	39841349	+	923.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164466, intron 4 of 9)	intron (NM_001164466, intron 4 of 9)	16621.0	NM_001164466	64705.0	Mm.275974	NM_022722	ENSMUSG00000022304	Dpys	1200017I10Rik|1300004I01Rik|DHP|DHPase	dihydropyrimidinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102704266-6	chr12	102703766	102704766	+	923.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	603.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-101696415-4	chr2	101695930	101696930	+	923.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303273, intron 6 of 6)	intron (NM_001303273, intron 6 of 6)	18010.0	NM_001303273	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-36381002-4	chr12	36380505	36381505	+	923.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289502)	promoter-TSS (NM_001289502)	-445.0	NM_001289504	75847.0	Mm.261764	NM_178629	ENSMUSG00000043153	Ispd	4930579E17Rik|AV040780	isoprenoid synthase domain containing	protein-coding	48.5	158.0	141.0	36.5	148.5	99.5
Merged-chr14-51088660-4	chr14	51088069	51089069	+	923.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2508.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30657922-4	chr2	30657444	30658444	+	923.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_136917)	TTS (NR_136917)	20067.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-83609382-4	chr13	83608883	83609883	+	923.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347569, intron 3 of 10)	intron (NM_001347569, intron 3 of 10)	35776.0	NM_001347569	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	2.0	10.0	0.5	6.0	0.5	0.0
Merged-chr4-86723707-3	chr4	86723149	86724149	+	923.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-24906.0	NM_184088	329877.0	Mm.273718	NM_184088	ENSMUSG00000038024	Dennd4c	1700065A05Rik|AA420392	DENN/MADD domain containing 4C	protein-coding	1.5	0.0	1.0	1.5	1.0	0.0
Merged-chr6-83683094-3	chr6	83682554	83683554	+	923.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5197.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-154540349-3	chr3	154539823	154540823	+	923.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56388.0	NM_009968	12972.0	Mm.374855	NM_009968	ENSMUSG00000028199	Cryz	Sez9	crystallin, zeta	protein-coding	1.5	0.0	0.0	0.0	2.0	6.0
Merged-chr14-27190347-3	chr14	27189849	27190849	+	923.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	intron (NM_001289686, intron 2 of 12)	46356.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101995633-4	chr5	101995143	101996143	+	923.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	74278.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-18794642-4	chr13	18794143	18795143	+	923.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 7 of 28)	intron (NM_172120, intron 7 of 28)	77351.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-63612287-4	chr15	63611794	63612794	+	923.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132686.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	25.5	58.0	29.5	20.0	44.0	29.0
Merged-chr8-115539766-4	chr8	115539279	115540279	+	923.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	167115.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74390776-4	chr1	74390276	74391276	+	923.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153088)	promoter-TSS (NM_153088)	-833.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-169703158-4	chr2	169702640	169703640	+	923.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080455, intron 1 of 1)	B1F|SINE|Alu	69494.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr3-79103957-2	chr3	79103457	79104457	+	923.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001099624, intron 3 of 23)	intron (NM_001099624, intron 3 of 23)	40930.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	11.5	20.5	10.5	48.0	80.0	50.5
Merged-chr2-34715947-2	chr2	34715447	34716447	+	923.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025709, intron 9 of 26)	intron (NM_025709, intron 9 of 26)	39285.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84682798-2	chr18	84682298	84683298	+	923.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289531)	promoter-TSS (NM_001289531)	-739.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90113121-4	chr9	90112649	90113649	+	923.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039147, intron 1 of 12)	intron (NM_001039147, intron 1 of 12)	1671.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	11.0	56.0	35.5	23.0	64.0	19.0
Merged-chr19-10979361-4	chr19	10978902	10979902	+	923.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034898, intron 6 of 6)	intron (NM_001034898, intron 6 of 6)	-4732.0	NM_023529	69826.0	Mm.273404	NM_023529	ENSMUSG00000024731	Ms4a10	2010001N17Rik	membrane-spanning 4-domains, subfamily A, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-80493150-3	chr8	80492709	80493709	+	923.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010369)	promoter-TSS (NM_010369)	-836.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110692665-3	chr9	110692172	110693172	+	923.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 2 of 6)	URR1B|DNA|hAT-Charlie	36169.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	1.0	0.0	3.5	0.0	2.5	0.0
Merged-chr10-111163902-3	chr10	111163391	111164391	+	923.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175489)	promoter-TSS (NM_175489)	-911.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-29195840-3	chr5	29195343	29196343	+	923.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289757)	promoter-TSS (NM_001289757)	-150.0	NM_001289757	56874.0	Mm.87352	NM_021470	ENSMUSG00000029130	Rnf32	1700009J01Rik|2700025B22Rik|4930542N22Rik|Lmbr2	ring finger protein 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151499868-3	chr1	151499363	151500363	+	923.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360844, intron 1 of 8)	intron (NM_001360844, intron 1 of 8)	1128.0	NM_001360845	19821.0	Mm.474038	NM_011277	ENSMUSG00000026484	Rnf2	AI326319|AI450156|AU019207|Ring1B|dinG	ring finger protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50352592-3	chr14	50352081	50353081	+	923.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR41|LTR|ERV1	-5333.0	NM_205819	239081.0	Mm.291512	NM_205819	ENSMUSG00000051969	Tlr11	Gm287	toll-like receptor 11	protein-coding	1.5	0.0	0.0	0.0	0.5	0.0
Merged-chr8-16429943-4	chr8	16429449	16430449	+	923.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053171, intron 7 of 69)	intron (NM_053171, intron 7 of 69)	-261111.0	NR_037214	100526464.0		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA	10.5	2.5	17.5	9.5	9.5	11.5
Merged-chr19-6895765-4	chr19	6895261	6896261	+	923.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44-int|LTR|ERVK	-13937.0	NM_001166370	67674.0	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-74961333-4	chr18	74960838	74961838	+	923.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010720)	promoter-TSS (NM_010720)	-75.0	NM_010720	16891.0	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding	3.5	0.0	0.0	0.0	0.0	0.5
Merged-chr2-103947053-3	chr2	103946571	103947571	+	923.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-10924.0	NM_001142337	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52982790-4	chr2	52982335	52983335	+	923.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	B4A|SINE|B4	124967.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120984655-4	chr7	120984151	120985151	+	923.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028955, intron 1 of 7)	intron (NM_028955, intron 1 of 7)	2142.0	NM_028955	74466.0	Mm.189707	NM_028955	ENSMUSG00000030877	Mfsd13b	4933427G17Rik	major facilitator superfamily domain containing 13B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-35730044-4	chr5	35729546	35730546	+	923.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194344)	promoter-TSS (NM_194344)	-770.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165985418-6	chr2	165984622	165985622	+	923.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-7515.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	6.5	19.0	28.0	6.5	14.0	10.5
Merged-chr17-47156406-4	chr17	47155900	47156900	+	923.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 3 of 19)	intron (NM_001097623, intron 3 of 19)	15458.0	NM_001097623	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40617888-3	chr9	40617380	40618380	+	923.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	-68084.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	11.0	10.0	7.0	0.0	0.0	2.5
Merged-chr18-23885929-3	chr18	23885404	23886404	+	923.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 7 of 7)	tRNA-Ala-GCY_|tRNA|tRNA	-68784.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-7130897-3	chr7	7130388	7131388	+	923.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029584, exon 4 of 4)	3' UTR (NM_029584, exon 4 of 4)	5867.0	NM_029584	76373.0	Mm.159732	NM_029584	ENSMUSG00000063535	Zfp773	2810409K11Rik	zinc finger protein 773	protein-coding	14.0	24.5	31.5	23.0	56.5	59.0
Merged-chr11-115132035-3	chr11	115131531	115132531	+	923.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001169153, intron 1 of 6)	L2|LINE|L2	1961.0	NM_001347648	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr12-76196504-8	chr12	76195952	76196952	+	923.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19193.0	NR_104386	13983.0	Mm.2561	NM_010157	ENSMUSG00000021055	Esr2	ER[b]|ERbeta|Estrb	estrogen receptor 2 (beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120733785-4	chr11	120733245	120734245	+	923.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-1724.0	NM_007621	12409.0	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117285236-4	chr8	117284732	117285732	+	923.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	28213.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5588402-2	chr17	5587902	5588902	+	923.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	95802.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-37197015-3	chr6	37196514	37197514	+	923.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	102962.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-183804433-4	chr1	183803912	183804912	+	923.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151520, intron 2 of 2)	intron (NR_151520, intron 2 of 2)	55435.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	20.0	22.5	30.5	18.0	31.0	23.5
Merged-chr9-110711576-4	chr9	110711073	110712073	+	923.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028312)	TTS (NM_028312)	31037.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108597510-2	chr9	108597010	108598010	+	923.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_028944, exon 1 of 9)	exon (NM_028944, exon 1 of 9)	102.0	NM_028944	74443.0	Mm.226534	NM_028944	ENSMUSG00000006675	P4htm	4933406E20Rik|AI853847|BB128974|HIF-PH4|HPH-4|P4H-TM|Ph-4	prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34588369-4	chr19	34587899	34588899	+	923.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010501, exon 2 of 2)	3' UTR (NM_010501, exon 2 of 2)	4870.0	NM_010501	15959.0	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	9.5	16.0	9.0	12.5	14.0	6.5
Merged-chr8-7954205-4	chr8	7953709	7954709	+	923.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	706564.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	3.0	0.0	0.0	0.0	0.5	4.0
Merged-chr1-180389441-2	chr1	180388941	180389941	+	923.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-58892.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-53818008-4	chr5	53817488	53818488	+	923.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144517, intron 1 of 20)	intron (NM_144517, intron 1 of 20)	8361.0	NM_144517	67249.0	Mm.28823	NM_144517	ENSMUSG00000039178	Tbc1d19	2810453K03Rik	TBC1 domain family, member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11286084-4	chr16	11285582	11286582	+	923.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-27727.0	NM_011608	21935.0	Mm.12935	NM_011608	ENSMUSG00000022496	Tnfrsf17	BCM|BCMA|Tnfrsf13|Tnfrsf13a	tumor necrosis factor receptor superfamily, member 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-114851996-3	chr9	114851497	114852497	+	923.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7845.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	3.0	0.0	2.5	6.5	20.5	20.5
Merged-chr14-122638367-4	chr14	122637848	122638848	+	923.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 7 of 24)	intron (NR_153443, intron 7 of 24)	104020.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-135907714-4	chr6	135907200	135908200	+	923.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008171, intron 5 of 14)	intron (NM_008171, intron 5 of 14)	248787.0	NR_126088	75024.0	Mm.399147	NR_126088	ENSMUSG00000107396	4930425L21Rik	4930473P14Rik	RIKEN cDNA 4930425L21 gene	ncRNA	0.0	9.5	6.5	3.5	3.0	2.5
Merged-chr6-120956444-4	chr6	120955964	120956964	+	923.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270475, intron 27 of 31)	intron (NM_001270475, intron 27 of 31)	-2380.0	NR_138099	215458.0	Mm.122399	NR_138099		LOC215458	-	uncharacterized LOC215458	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55688780-4	chr19	55688283	55689283	+	923.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	13421.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	31.5	106.0	51.5	16.0	59.0	48.0
Merged-chr5-21221087-3	chr5	21220585	21221585	+	923.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 6 of 26)	intron (NR_153365, intron 6 of 26)	34818.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88545465-4	chr17	88544994	88545994	+	923.7160640000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028658, intron 3 of 21)	intron (NM_028658, intron 3 of 21)	15370.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	10.5	46.5	13.5	17.0	6.0	8.5
Merged-chr11-23688282-4	chr11	23687788	23688788	+	923.712524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033654, intron 4 of 17)	ID4_|SINE|ID	22312.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-53010919-3	chr9	53010407	53011407	+	923.711121	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44B|LTR|ERVK	237205.0	NM_029936	77591.0	Mm.133560	NM_029936	ENSMUSG00000053289	Ddx10	4632415A01Rik|AI646054	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-151187168-4	chr5	151186675	151187675	+	923.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153382, intron 1 of 13)	intron (NR_153382, intron 1 of 13)	3018.0	NM_001163493	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9818178-4	chr3	9817676	9818676	+	923.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195031, intron 1 of 8)	intron (NM_001195031, intron 1 of 8)	15503.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	1.0	3.5	5.5	2.0	0.0	0.5
Merged-chr15-81199503-4	chr15	81198940	81199940	+	923.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8587.0	NR_015603	67638.0	Mm.390832	NM_026288	ENSMUSG00000047938	4930483J18Rik	-	RIKEN cDNA 4930483J18 gene	ncRNA	0.0	1.0	1.5	0.5	0.5	1.5
Merged-chr13-70650276-4	chr13	70649693	70650693	+	923.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-12559.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-110018447-4	chr2	110017950	110018950	+	923.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149736, intron 1 of 6)	intron (NR_149736, intron 1 of 6)	633.0	NR_149736	68201.0	Mm.181767	NM_026613	ENSMUSG00000027160	Ccdc34	2810027O19Rik|4930522P10Rik|AI596202	coiled-coil domain containing 34	protein-coding	6.0	12.5	4.0	13.5	2.0	14.0
Merged-chr19-46505466-8	chr19	46504950	46505950	+	923.6875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	3802.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-109278219-3	chr2	109277726	109278726	+	923.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029790)	promoter-TSS (NM_029790)	64.0	NM_029790	76894.0	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93575495-3	chr1	93574982	93575982	+	923.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145519, intron 9 of 26)	intron (NM_145519, intron 9 of 26)	60245.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-57729598-3	chr14	57729076	57730076	+	923.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153382, intron 1 of 1)	intron (NM_153382, intron 1 of 1)	4842.0	NM_153382	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-30922599-3	chr12	30922100	30923100	+	923.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289480, intron 2 of 8)	intron (NM_001289480, intron 2 of 8)	10931.0	NM_013709	24057.0	Mm.218624	NM_013709	ENSMUSG00000020669	Sh3yl1	AI314953|Ray|YSC84	Sh3 domain YSC-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-49597374-6	chr4	49596824	49597824	+	923.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_149725, exon 1 of 3)	non-coding (NR_149725, exon 1 of 3)	146.0	NR_149725	67063.0	Mm.454013	NM_025944	ENSMUSG00000039611	Tmem246	2810432L12Rik|9330170P15Rik|AI835809	transmembrane protein 246	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10558884-3	chr17	10558389	10559389	+	923.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 4 of 4)	Lx8|LINE|L1	102673.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39418060-3	chr1	39417552	39418552	+	923.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018775, intron 2 of 19)	intron (NM_018775, intron 2 of 19)	50201.0	NM_001252218	114641.0	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81836165-3	chr15	81835663	81836663	+	923.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22163.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24304713-3	chr2	24304213	24305213	+	923.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13517.0	NM_153077	215274.0	Mm.218750	NM_153077	ENSMUSG00000046845	Il1f10	-	interleukin 1 family, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79696327-3	chr10	79695886	79696886	+	923.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_038088)	TTS (NR_038088)	2560.0	NM_001302499	16904.0	Mm.378960	NM_008504	ENSMUSG00000054206	Gzmm	Lmet1|MMET-1	granzyme M (lymphocyte met-ase 1)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-31123428-6	chr8	31122891	31123891	+	923.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175136, intron 2 of 5)	intron (NM_175136, intron 2 of 5)	11545.0	NM_175136	68867.0	Mm.29532	NM_175136	ENSMUSG00000039328	Rnf122	1110063C11Rik	ring finger protein 122	protein-coding	18.5	40.5	31.5	14.0	24.0	25.5
Merged-chr2-27727567-2	chr2	27727067	27728067	+	923.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	16984.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82218976-4	chr15	82218471	82219471	+	923.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5409.0	NM_028075	72049.0	Mm.240047	NM_028075	ENSMUSG00000068105	Tnfrsf13c	2010006P15Rik|BAFF-R|Baffr|Bcmd|Bcmd-1|Bcmd1|Lvis22	tumor necrosis factor receptor superfamily, member 13c	protein-coding	0.5	9.5	13.0	0.0	2.0	2.0
Merged-chr5-121204680-6	chr5	121204231	121205231	+	923.638916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011290, intron 1 of 6)	CpG	230.0	NM_011290	19988.0	Mm.262021	NM_011290	ENSMUSG00000029614	Rpl6	Taxreb107	ribosomal protein L6	protein-coding	0.0	0.0	1.0	2.0	7.0	1.5
Merged-chr1-170545561-4	chr1	170545057	170546057	+	923.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 1 of 9)	L1MC4|LINE|L1	11553.0	NM_027528	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106401063-4	chr1	106400575	106401575	+	923.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	145556.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	4.5	5.0	6.0	5.0	9.0	4.0
Merged-chr14-27249394-2	chr14	27248894	27249894	+	923.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 1 of 10)	intron (NM_027871, intron 1 of 10)	11384.0	NM_027871	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5804530-4	chr17	5804039	5805039	+	923.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5049.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95567176-4	chr9	95566673	95567673	+	923.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7356.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59035268-4	chr4	59034890	59035890	+	923.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025277, intron 1 of 2)	CpG	234.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	0.0	0.5	17.5	19.5	73.0	42.5
Merged-chr17-57338202-4	chr17	57337692	57338692	+	923.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20494.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-115738712-8	chr4	115738185	115739185	+	923.59375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172698, exon 1 of 12)	exon (NM_172698, exon 1 of 12)	612.0	NM_172698	230648.0	Mm.283565	NM_172698	ENSMUSG00000034210	Efcab14	4732418C07Rik	EF-hand calcium binding domain 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-56434748-4	chr12	56434240	56435240	+	923.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88846.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80269196-4	chr7	80268671	80269671	+	923.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178070)	promoter-TSS (NM_178070)	-484.0	NM_178070	233405.0	Mm.322870	NM_178070	ENSMUSG00000030534	Vps33b	-	vacuolar protein sorting 33B	protein-coding	2.0	20.5	20.0	6.0	13.5	9.5
Merged-chr14-120307105-4	chr14	120306548	120307548	+	923.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 1 of 8)	intron (NM_001360376, intron 1 of 8)	596.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-96409244-3	chr7	96408760	96409760	+	923.577759	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 2 of 32)	intron (NM_011858, intron 2 of 32)	-67296.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	0.0	6.0	11.5	21.0	9.5	17.0
Merged-chr16-87746929-4	chr16	87746414	87747414	+	923.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	47960.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23224819-4	chr16	23224318	23225318	+	923.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145933)	promoter-TSS (NM_145933)	78.0	NM_145933	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32897699-4	chr12	32897219	32898219	+	923.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56070.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167887893-6	chr2	167887371	167888371	+	923.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44456.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49085037-4	chr11	49084532	49085532	+	923.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271677, intron 1 of 2)	intron (NM_001271677, intron 1 of 2)	-1985.0	NM_001271676	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10965154-4	chr16	10964648	10965648	+	923.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 2 of 3)	intron (NM_019980, intron 2 of 3)	27973.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-19276380-4	chr2	19275824	19276824	+	923.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081083, intron 10 of 19)	intron (NM_001081083, intron 10 of 19)	-67993.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84358035-2	chr8	84357533	84358533	+	923.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57331.0	NM_001252060	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	2.0	2.5	3.0	3.0	0.0	0.0
Merged-chr4-149836187-4	chr4	149835700	149836700	+	923.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-61933.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr5-38470064-4	chr5	38469639	38470639	+	923.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145559, intron 3 of 10)	intron (NM_145559, intron 3 of 10)	10167.0	NM_001102414	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45158361-2	chr7	45157858	45158858	+	923.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285904, intron 4 of 9)	intron (NM_001285904, intron 4 of 9)	2412.0	NM_001285904	68845.0	Mm.181689	NM_029406	ENSMUSG00000003423	Pih1d1	1110061L23Rik|4933413A04Rik|Nop17	PIH1 domain containing 1	protein-coding	1.0	1.0	2.5	0.0	0.0	0.0
Merged-chr5-64235843-2	chr5	64235343	64236343	+	923.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	5486.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-151045995-2	chr4	151045495	151046495	+	923.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1330.0	NM_001289878	18628.0	Mm.121361	NM_011067	ENSMUSG00000028957	Per3	2810049O06Rik|mPer3	period circadian clock 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59802803-2	chr4	59802303	59803303	+	923.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-2847.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-124027503-4	chr9	124027014	124028014	+	923.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009914, intron 1 of 1)	intron (NM_009914, intron 1 of 1)	5543.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-16836291-2	chr12	16835737	16836737	+	923.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25272.0	NM_033270	50496.0	Mm.23296	NM_033270	ENSMUSG00000057469	E2f6	AI462434|E2F6a|E2F6b|EMA	E2F transcription factor 6	protein-coding	4.0	1.5	0.5	0.0	8.5	2.0
Merged-chr18-12971607-2	chr18	12971107	12972107	+	923.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008378)	promoter-TSS (NM_008378)	-316.0	NM_008378	16210.0	Mm.8154	NM_008378	ENSMUSG00000024423	Impact	E430016J11Rik	impact, RWD domain protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29788252-4	chr2	29787745	29788745	+	923.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290496)	promoter-TSS (NM_001290496)	-574.0	NM_001290495	227682.0	Mm.245739	NM_145520	ENSMUSG00000039826	Trub2	G430055L02Rik	TruB pseudouridine (psi) synthase family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98960975-2	chr13	98960482	98961482	+	923.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23583.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	31.0	56.5	40.0	24.0	18.5	17.0
Merged-chr8-10882314-2	chr8	10881814	10882814	+	923.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040705, intron 1 of 5)	intron (NR_040705, intron 1 of 5)	140.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150139933-2	chr4	150139433	150140433	+	923.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_019741, exon 10 of 14)	exon (NM_019741, exon 10 of 14)	-9039.0	NM_001085529	435818.0	Mm.359648	NM_001085529	ENSMUSG00000062064	Slc2a7	-	solute carrier family 2 (facilitated glucose transporter), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101181260-2	chr15	101180760	101181760	+	923.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007395, intron 1 of 8)	intron (NM_007395, intron 1 of 8)	7188.0	NM_007395	11479.0	Mm.308467	NM_007395	ENSMUSG00000000532	Acvr1b	6820432J04|ALK-4|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124521686-2	chr5	124521186	124522186	+	923.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021430, intron 1 of 6)	intron (NM_021430, intron 1 of 6)	9705.0	NM_021430	75695.0	Mm.41180	NM_021430	ENSMUSG00000029392	Rilpl1	2900002H16Rik|6330559I19Rik|GOSPEL	Rab interacting lysosomal protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71439423-2	chr6	71438923	71439923	+	923.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355745, intron 1 of 9)	intron (NM_001355745, intron 1 of 9)	1214.0	NM_001355745	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32437200-2	chr18	32436700	32437700	+	923.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-58916.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-33795556-2	chr18	33795013	33796013	+	923.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013512)	TTS (NM_013512)	621.0	NR_038151	69749.0	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	43.0	106.0	88.0	35.5	115.5	90.0
Merged-chr9-49049755-2	chr9	49049255	49050255	+	923.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5826.0	NM_012039	26951.0	Mm.24791	NM_012039	ENSMUSG00000032264	Zw10	6330566F14Rik|MmZw10	zw10 kinetochore protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74386329-2	chr1	74385829	74386829	+	923.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013612)	TTS (NM_013612)	-5280.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121279854-2	chr14	121279354	121280354	+	923.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_134082, exon 25 of 27)	exon (NM_134082, exon 25 of 27)	31148.0	NR_155502	320268.0	Mm.435974	NR_155502		B930095G15Rik	-	RIKEN cDNA B930095G15 gene	ncRNA	0.0	2.5	0.0	1.5	2.5	0.0
Merged-chr10-39455985-2	chr10	39455485	39456485	+	923.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122893, intron 3 of 13)	intron (NM_001122893, intron 3 of 13)	86186.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55321726-6	chr13	55321038	55322038	+	923.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025596)	promoter-TSS (NM_025596)	442.0	NM_009000	19336.0	Mm.220923	NM_009000	ENSMUSG00000034789	Rab24	6530406O07Rik	RAB24, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11033740-2	chr16	11033240	11034240	+	923.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	24842.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45644652-2	chr7	45644152	45645152	+	923.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172418, intron 9 of 9)	intron (NM_172418, intron 9 of 9)	4675.0	NM_172418	74490.0	Mm.107442	NM_172418	ENSMUSG00000042918	Mamstr	2810022D01Rik|5430432N15Rik|AW743872|Mastr	MEF2 activating motif and SAP domain containing transcriptional regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152030298-2	chr2	152029798	152030798	+	923.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30432.0	NM_001164820	69698.0	Mm.258262	NM_027172	ENSMUSG00000027463	Slc52a3	2310046K01Rik|RFT2	solute carrier protein family 52, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97422744-2	chr6	97422244	97423244	+	923.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 3 of 23)	Lx5c|LINE|L1	36542.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25768501-3	chr14	25767997	25768997	+	923.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 1 of 3)	CpG	359.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61723138-2	chr11	61722638	61723638	+	923.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-2339.0	NM_001033227	109342.0	Mm.441070	NM_001033227	ENSMUSG00000042371	Slc5a10	C330021F16Rik|SGLT5	solute carrier family 5 (sodium/glucose cotransporter), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125342350-4	chr6	125341847	125342847	+	923.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011324, intron 7 of 11)	L1M4|LINE|L1	-7376.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	3.0	9.5	9.5	6.0	5.5	3.0
Merged-chr3-129984953-3	chr3	129984433	129985433	+	923.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207209, intron 22 of 23)	intron (NM_207209, intron 22 of 23)	-14727.0	NM_001293644	66815.0	Mm.31056	NM_025779	ENSMUSG00000027994	Mcub	9030408N13Rik|Ccdc109b	mitochondrial calcium uniporter dominant negative beta subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86240016-2	chr15	86239516	86240516	+	923.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 4 of 12)	intron (NM_145476, intron 4 of 12)	25557.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99315125-3	chr12	99314605	99315605	+	923.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 3 of 5)	intron (NM_183186, intron 3 of 5)	134969.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44718442-4	chr13	44717948	44718948	+	923.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12326.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-81996163-4	chr3	81995644	81996644	+	923.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021370)	promoter-TSS (NM_021370)	-778.0	NM_021370	58170.0	Mm.88839	NM_021370	ENSMUSG00000028008	Asic5	Accn5|Blinac|Inac	acid-sensing (proton-gated) ion channel family member 5	protein-coding	0.0	0.5	0.0	2.0	0.0	0.0
Merged-chr1-43843658-4	chr1	43843117	43844117	+	923.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15909.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155814837-3	chr1	155814338	155815338	+	923.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1939.0	NM_001024945	104009.0	Mm.27035	NM_023268	ENSMUSG00000033684	Qsox1	1300003H02Rik|QSOX|Qscn6|SOx|b2b2673Clo	quiescin Q6 sulfhydryl oxidase 1	protein-coding	3.0	0.0	2.0	12.5	37.5	21.5
Merged-chr2-154402165-3	chr2	154401665	154402665	+	923.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009228, intron 2 of 7)	B3|SINE|B2	5919.0	NM_009228	20648.0	Mm.1541	NM_009228	ENSMUSG00000027488	Snta1	AW228934|Snt1	syntrophin, acidic 1	protein-coding	9.5	17.0	17.0	15.0	13.5	15.5
Merged-chr4-109665281-4	chr4	109664749	109665749	+	923.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007671, exon 1 of 2)	5' UTR (NM_007671, exon 1 of 2)	123.0	NM_007671	12580.0	Mm.1912	NM_007671	ENSMUSG00000028551	Cdkn2c	C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c	cyclin dependent kinase inhibitor 2C	protein-coding	1.5	15.0	10.0	10.0	29.0	8.0
Merged-chr13-96106618-4	chr13	96106118	96107118	+	923.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029210, intron 1 of 12)	MLT1C|LTR|ERVL-MaLR	25959.0	NM_029210	75209.0	Mm.40436	NM_029210	ENSMUSG00000051111	Sv2c	4930527L09Rik|AI841971	synaptic vesicle glycoprotein 2c	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59925427-4	chr2	59924856	59925856	+	923.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 20 of 35)	intron (NM_001001182, intron 20 of 35)	-42750.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55470617-2	chr13	55470117	55471117	+	923.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001030296, intron 1 of 2)	intron (NM_001030296, intron 1 of 2)	6350.0	NM_001030296	432763.0	Mm.315457	NM_001030296	ENSMUSG00000034686	Prr7	XM_484263	proline rich 7 (synaptic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-109685753-7	chr13	109685212	109686212	+	923.404785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-218097.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.0	0.0	0.0	3.0	0.0	0.0
Merged-chr15-103313584-4	chr15	103313099	103314099	+	923.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013866)	TTS (NM_013866)	-3161.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-13409931-4	chr2	13409452	13410452	+	923.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081084, intron 27 of 66)	intron (NM_001081084, intron 27 of 66)	81924.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153796218-3	chr1	153795719	153796719	+	923.355591	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243223, intron 15 of 20)	MTA_Mm|LTR|ERVL-MaLR	46793.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170205622-6	chr2	170205011	170206011	+	923.35553	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62836.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	4.0	23.5	17.0	10.0	11.5	7.0
Merged-chr1-54896804-4	chr1	54896412	54897412	+	923.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	29475.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-24987659-7	chr8	24987153	24988153	+	923.334534	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270996, intron 11 of 21)	Lx4A|LINE|L1	29269.0	NM_001270996	11502.0	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96188338-4	chr10	96187878	96188878	+	923.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37829.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166522734-4	chr2	166522237	166523237	+	923.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41785.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53762351-2	chr11	53761851	53762851	+	923.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	7SLRNA|srpRNA|srpRNA	1303.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4197207-2	chr11	4196707	4197707	+	923.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	10374.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125620455-3	chr8	125619934	125620934	+	923.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35796.0	NR_015535	75930.0	Mm.195663	NR_015535	ENSMUSG00000110629	4930567H12Rik	4930579P07Rik	RIKEN cDNA 4930567H12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-104315779-3	chr12	104315275	104316275	+	923.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101472, intron 1 of 3)	intron (NM_001101472, intron 1 of 3)	1205.0	NM_001101472	238395.0	Mm.436975	NM_001101472	ENSMUSG00000079013	Serpina3j	AI506554|EG238395|Gm4931	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3J	protein-coding	0.0	3.0	0.0	0.5	3.5	1.0
Merged-chr13-42515132-3	chr13	42514624	42515624	+	923.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-165675.0	NM_001302635	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.0	1.0	0.0	0.0	0.0	4.0
Merged-chr7-31112228-3	chr7	31111741	31112741	+	923.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110252, intron 2 of 13)	intron (NM_001110252, intron 2 of 13)	-1244.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	7.5	12.5	9.5	11.5	23.0	7.0
Merged-chr9-71188795-3	chr9	71188288	71189288	+	923.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110517, intron 5 of 5)	MLT1D|LTR|ERVL-MaLR	20012.0	NR_110517	102635087.0	Mm.444536	NR_110517	ENSMUSG00000111429	Gm32511	-	predicted gene, 32511	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83633019-3	chr17	83632520	83633520	+	923.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1125.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-17276708-3	chr19	17276222	17277222	+	923.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62783.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	156.5	360.5	390.0	16.5	5.0	7.5
Merged-chr16-50061618-4	chr16	50061094	50062094	+	923.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045935, intron 1 of 3)	intron (NR_045935, intron 1 of 3)	11258.0	NR_045935	224180.0	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61930845-4	chr11	61930328	61931328	+	923.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019921)	promoter-TSS (NM_019921)	-571.0	NM_019921	56697.0	Mm.274404	NM_019921	ENSMUSG00000047804	Akap10	1500031L16Rik|B130049N18Rik|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-5306798-4	chr16	5306313	5307313	+	923.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-50857.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44018575-4	chr16	44018070	44019070	+	923.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359085, intron 5 of 16)	intron (NM_001359085, intron 5 of 16)	-2134.0	NM_153528	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117110696-4	chr11	117110240	117111240	+	923.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4432.0	NR_029459	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53369939-2	chr19	53369439	53370439	+	923.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008543, intron 4 of 5)	intron (NM_001008543, intron 4 of 5)	20102.0	NM_001356986	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27027522-4	chr2	27026998	27027998	+	923.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177627, intron 1 of 8)	intron (NM_001177627, intron 1 of 8)	500.0	NM_172659	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67302539-4	chr10	67302031	67303031	+	923.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17250.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78895872-4	chr15	78895377	78896377	+	923.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3891.0	NR_133564	20401.0	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	9.5	11.0	1.0	7.0	4.5	4.5
Merged-chr4-83303667-4	chr4	83303149	83304149	+	923.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 1 of 19)	intron (NM_027238, intron 1 of 19)	20540.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	1.5	2.0	1.5	3.5	4.0	8.0
Merged-chr8-25990226-6	chr8	25989683	25990683	+	923.288879	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029037, intron 1 of 4)	intron (NM_029037, intron 1 of 4)	3938.0	NM_029037	74653.0	Mm.17631	NM_029037	ENSMUSG00000037251	Pomk	4930444A02Rik|Sgk196	protein-O-mannose kinase	protein-coding	6.5	17.5	10.5	11.0	10.5	5.0
Merged-chr4-133907420-6	chr4	133907107	133908107	+	923.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19810.0	NM_009097	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	21.5	56.5	49.5	26.5	88.0	52.0
Merged-chr14-25749384-3	chr14	25748887	25749887	+	923.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 2 of 3)	intron (NM_001101433, intron 2 of 3)	19469.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83995833-2	chr8	83995338	83996338	+	923.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001277898, exon 10 of 10)	3' UTR (NM_001277898, exon 10 of 10)	-1834.0	NM_001081415	666704.0	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	0.0	2.5	5.0	0.0	0.0	0.0
Merged-chr1-171561438-4	chr1	171560926	171561926	+	923.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018729, intron 1 of 8)	intron (NM_018729, intron 1 of 8)	2233.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	1.5	1.5	4.0	0.5	0.0	0.5
Merged-chr3-84479612-2	chr3	84479109	84480109	+	923.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205355)	promoter-TSS (NM_001205355)	-118.0	NM_001205355	229474.0	Mm.331107	NM_001033301	ENSMUSG00000041842	Fhdc1	6330505N24Rik|Gm126	FH2 domain containing 1	protein-coding	0.0	0.0	0.0	3.5	1.0	1.0
Merged-chr14-74944845-3	chr14	74944345	74945345	+	923.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	3032.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75841285-2	chr15	75840785	75841785	+	923.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172121, intron 1 of 11)	intron (NM_172121, intron 1 of 11)	623.0	NM_172121	223642.0	Mm.209800	NM_172121	ENSMUSG00000075600	Zc3h3	BC049953|Kiaa0150|Smicl|Zc3hdc3	zinc finger CCCH type containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19302691-4	chr7	19302179	19303179	+	923.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008036)	TTS (NM_008036)	7366.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6277936-4	chr15	6277448	6278448	+	923.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21841.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66144464-4	chr5	66143953	66144953	+	923.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	6525.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	4.5	15.0	6.5	0.0	12.5	4.0
Merged-chr3-38116222-4	chr3	38115731	38116731	+	923.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91888.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27724409-11	chr15	27723916	27724916	+	923.242432	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42874.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-26765085-4	chr14	26764581	26765581	+	923.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR50A|LTR|ERVK	-95235.0	NM_178668	211948.0	Mm.290758	NM_178668	ENSMUSG00000043702	Pde12	2'-PDE|E430028B21Rik	phosphodiesterase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119041875-3	chr11	119041304	119042304	+	923.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013926)	promoter-TSS (NM_013926)	-891.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr7-71872507-3	chr7	71872011	71873011	+	923.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37184.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	10.5	9.0	11.5	7.5	57.0	14.5
Merged-chr13-111807230-3	chr13	111806723	111807723	+	923.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	1770.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	35.0	166.0	94.0	60.0	183.5	84.0
Merged-chr5-92106465-4	chr5	92105960	92106960	+	923.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-22716.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	5.0	1.0	3.5	5.0	1.0	3.5
Merged-chr1-80635893-4	chr1	80635450	80636450	+	923.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 2 of 55)	intron (NM_175291, intron 2 of 55)	29402.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21436315-6	chr9	21435852	21436852	+	923.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 1 of 19)	intron (NM_001357721, intron 1 of 19)	11444.0	NM_001357719	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105056272-4	chr5	105055758	105056758	+	923.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-2697.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-100506866-4	chr9	100506354	100507354	+	923.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324530)	promoter-TSS (NM_001324530)	2.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	52.5	131.5	119.0	82.0	171.5	100.0
Merged-chr13-49194900-3	chr13	49194492	49195492	+	923.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013610, exon 3 of 4)	exon (NM_013610, exon 3 of 4)	7445.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-50910640-3	chr10	50910118	50911118	+	923.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011376, exon 8 of 11)	exon (NM_011376, exon 8 of 11)	14967.0	NM_011376	20464.0	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded family bHLH transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37094312-3	chr9	37093826	37094826	+	923.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 1 of 12)	intron (NM_001029838, intron 1 of 12)	52996.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	0.0	0.0	2.0	1.0	3.0	2.0
Merged-chr15-95801421-4	chr15	95800917	95801917	+	923.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	10574.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119677333-4	chr11	119676828	119677828	+	923.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028898, intron 3 of 33)	intron (NM_028898, intron 3 of 33)	74423.0	NM_028898	74370.0	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	1.5	0.0	0.5	1.5	2.5	0.5
Merged-chr17-28709929-4	chr17	28709405	28710405	+	923.160706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	17337.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105987262-4	chr1	105986757	105987757	+	923.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151625, intron 2 of 2)	B3A|SINE|B2	3025.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	29.5	68.5	65.5	27.5	67.5	54.5
Merged-chr5-64160291-4	chr5	64159843	64160843	+	923.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310611)	promoter-TSS (NM_001310611)	83.0	NM_001310611	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-56865765-3	chr8	56865280	56866280	+	923.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	314646.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84942393-3	chr3	84941880	84942880	+	923.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177774, intron 3 of 12)	intron (NM_001177774, intron 3 of 12)	-9831.0	NM_080428	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122951749-4	chr5	122951205	122952205	+	923.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003953, intron 6 of 22)	intron (NM_001003953, intron 6 of 22)	37394.0	NM_001003953	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	0.0	0.0	1.5	3.5	0.0	0.5
Merged-chr8-94205935-4	chr8	94205450	94206450	+	923.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8614.0	NM_001357266	71805.0	Mm.458170	NM_172410	ENSMUSG00000032939	Nup93	2410008G02Rik	nucleoporin 93	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61432009-3	chr9	61431514	61432514	+	923.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59648.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10521343-4	chr16	10520812	10521812	+	923.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007575, intron 15 of 18)	intron (NM_007575, intron 15 of 18)	21742.0	NM_021428	58239.0	Mm.353006	NM_021428	ENSMUSG00000038055	Dexi	1810029J14Rik|AI836170|AW413143|D16Bwg0586e|Myle	dexamethasone-induced transcript	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40757394-6	chr9	40756902	40757902	+	923.0972289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	-43871.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	24.5	43.5	17.0	10.0	43.5	19.5
Merged-chr9-40809733-7	chr9	40809166	40810166	+	923.095215	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8393.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	15.5	28.5	16.0	13.0	29.5	17.0
Merged-chr3-90292420-4	chr3	90291923	90292923	+	923.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22274.0	NR_105979	102465612.0		NR_105979	ENSMUSG00000099199	Mir7012	Gm27370|mmu-mir-7012	microRNA 7012	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-72564135-4	chr14	72563625	72564625	+	923.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 15 of 25)	intron (NM_207636, intron 15 of 25)	145878.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-74854533-4	chr13	74854043	74855043	+	923.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45783.0	NM_001301153	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	0.0	2.5	0.5	0.0	0.5	0.0
Merged-chr1-151269930-4	chr1	151269427	151270427	+	923.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74559.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4207324-4	chr7	4206824	4207824	+	923.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30430.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31298031-4	chr2	31297479	31298479	+	923.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52056.0	NM_019681	14299.0	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54463269-4	chr14	54462758	54463758	+	923.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022993)	promoter-TSS (NM_022993)	-889.0	NM_022993	65107.0	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	3.5	23.5	1.5	7.0	29.0	9.5
Merged-chr2-158613748-3	chr2	158613253	158614253	+	923.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009508, intron 1 of 1)	intron (NM_009508, intron 1 of 1)	2995.0	NM_009508	22348.0	Mm.143404	NM_009508	ENSMUSG00000037771	Slc32a1	R75019|VGAT|Viaat	solute carrier family 32 (GABA vesicular transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-28057151-4	chr3	28056666	28057666	+	923.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 12 of 25)	intron (NM_008875, intron 12 of 25)	72995.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-190910059-4	chr1	190909550	190910550	+	923.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178775, intron 1 of 14)	intron (NM_178775, intron 1 of 14)	1720.0	NM_178775	320119.0	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	86.5	143.5	108.5	76.5	185.5	153.0
Merged-chr3-109340726-5	chr3	109340306	109341306	+	923.0285640000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_020505, exon 1 of 27)	5' UTR (NM_020505, exon 1 of 27)	123.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	9.0	14.5	15.0	4.0	22.5	5.0
Merged-chr1-161494534-4	chr1	161494048	161495048	+	923.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183391)	promoter-TSS (NM_183391)	-109.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	19.5	7.5	15.0	11.5	20.0	17.0
Merged-chr6-89430888-3	chr6	89430351	89431351	+	923.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 4 of 6)	ORR1F|LTR|ERVL-MaLR	-68238.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119789473-2	chr8	119788973	119789973	+	923.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11057.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142892779-1	chr5	142892279	142893279	+	923.0	f1_balb.idr	intron (NM_001033312, intron 1 of 4)	B1_Mus2|SINE|Alu	2459.0	NM_001033312	231863.0	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38875457-8	chr6	38874961	38875961	+	923.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 1 of 14)	intron (NM_010433, intron 1 of 14)	729.0	NM_010433	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-171982470-2	chr2	171981970	171982970	+	923.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR73|LTR|ERV1	-19671.0	NR_040509	75655.0	Mm.396203	NR_040509	ENSMUSG00000086823	1700028P15Rik	-	RIKEN cDNA 1700028P15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55472813-4	chr4	55472304	55473304	+	923.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-53962.0	NR_040674	100415914.0	Mm.261765	NR_040674	ENSMUSG00000087070	Gm12505	-	predicted gene 12505	ncRNA	0.0	8.0	8.5	9.5	13.5	25.5
Merged-chr18-14713525-4	chr18	14713037	14714037	+	923.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360823, intron 1 of 5)	intron (NM_001360823, intron 1 of 5)	7386.0	NM_001360823	73677.0	Mm.87277	NM_001163609	ENSMUSG00000036743	Psma8	2410072D24Rik	proteasome (prosome, macropain) subunit, alpha type, 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96896055-3	chr11	96895555	96896555	+	923.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20459.0	NM_001308183	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	76.0	128.5	119.0	41.5	40.0	37.5
Merged-chr19-24984615-3	chr19	24984082	24985082	+	923.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14947.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	6.5	12.5	13.5	13.0	25.5	22.5
Merged-chr13-48881532-2	chr13	48881032	48882032	+	923.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033268, intron 17 of 17)	intron (NM_001033268, intron 17 of 17)	-10647.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53332849-2	chr19	53332349	53333349	+	923.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008543, intron 2 of 5)	ORR1D1|LTR|ERVL-MaLR	2441.0	NM_001008543	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99229048-2	chr5	99228548	99229548	+	923.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 9 of 13)	intron (NM_181318, intron 9 of 13)	23879.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143483124-2	chr7	143482624	143483624	+	923.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042760, intron 5 of 10)	intron (NM_001042760, intron 5 of 10)	8008.0	NM_001042760	18400.0	Mm.271740	NM_008767	ENSMUSG00000000154	Slc22a18	AW260131|BWR1A|BWSCR1A|HET|ITM|Impt1|Orctl2|Slc22a1l|TSSC5|p45-BWR1A	solute carrier family 22 (organic cation transporter), member 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143594414-3	chr5	143593912	143594912	+	923.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28035.0	NM_011182	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	0.0	8.5	6.0	1.5	7.0	10.0
Merged-chr17-83513846-1	chr17	83513346	83514346	+	923.0	f0_balb.idr	intron (NM_009187, intron 1 of 2)	intron (NM_009187, intron 1 of 2)	487.0	NM_009187	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142368633-2	chr5	142368133	142369133	+	923.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32864.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-75181080-2	chr17	75180580	75181580	+	923.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019919, intron 5 of 33)	intron (NM_019919, intron 5 of 33)	2299.0	NM_001331235	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53111402-2	chr4	53110902	53111902	+	923.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	48493.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	5.5	7.5	10.5	8.0	8.5	10.5
Merged-chr10-121408493-2	chr10	121407993	121408993	+	923.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21B|LTR|ERVL	43403.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70843242-2	chr9	70842742	70843742	+	923.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	91566.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24152364-4	chr17	24151854	24152854	+	923.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1432.0	NM_001286662	18607.0	Mm.10504	NM_011062	ENSMUSG00000024122	Pdpk1	Pdk1	3-phosphoinositide dependent protein kinase 1	protein-coding	2.5	1.5	1.5	0.0	0.0	1.5
Merged-chr11-86840711-3	chr11	86840223	86841223	+	923.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33063.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-72260074-4	chr11	72259568	72260568	+	923.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004148, intron 4 of 11)	intron (NM_001004148, intron 4 of 11)	6536.0	NM_001004148	237831.0	Mm.340778	NM_001004148	ENSMUSG00000020805	Slc13a5	Indy|NaC2/NaCT|Nact|mINDY	solute carrier family 13 (sodium-dependent citrate transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32271395-2	chr11	32270895	32271895	+	923.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-3688.0	NM_001284359	17168.0	Mm.263161	NM_181569	ENSMUSG00000020289	Nprl3	Aag|CGTHBA|HS-26|HS-40|Mare|Phg|Prox1|m(alpha)RE	nitrogen permease regulator-like 3	protein-coding	0.0	1.0	0.0	3.0	0.0	4.0
Merged-chr10-53377209-4	chr10	53376708	53377708	+	923.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204983, intron 1 of 12)	intron (NM_001204983, intron 1 of 12)	2643.0	NM_001204983	100038725.0	Mm.441403	NM_001204983	ENSMUSG00000038594	Cep85l	Gm9766	centrosomal protein 85-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9810363-1	chr18	9809863	9810863	+	923.0	f0_balb.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	102715.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	4.0	2.0	0.0	2.0	1.0	0.0
Merged-chr13-17992751-2	chr13	17992251	17993251	+	923.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025904, intron 1 of 2)	intron (NM_025904, intron 1 of 2)	600.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34370539-4	chr5	34370029	34371029	+	923.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243123, intron 1 of 20)	CpG	596.0	NM_001243123	231128.0	Mm.286885	NM_001030306	ENSMUSG00000037210	Fam193a	-	family with sequence similarity 193, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10724253-3	chr17	10723758	10724758	+	923.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	115933.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25726646-2	chr17	25726146	25727146	+	923.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145409, intron 3 of 21)	intron (NM_145409, intron 3 of 21)	769.0	NM_145409	214901.0	Mm.102540	NM_145409	ENSMUSG00000019214	Chtf18	6030457M03Rik|CTF18|Chl12	CTF18, chromosome transmission fidelity factor 18	protein-coding	0.0	0.5	1.5	2.5	2.0	0.0
Merged-chr14-107069103-2	chr14	107068603	107069603	+	923.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-582583.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108202738-2	chr3	108202238	108203238	+	923.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175183, intron 11 of 11)	intron (NM_175183, intron 11 of 11)	-1904.0	NM_001081320	72023.0	Mm.246391	NM_028061	ENSMUSG00000048796	Cyb561d1	1600010M23Rik|AI605489|AW457162	cytochrome b-561 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-119489473-2	chr6	119488973	119489973	+	923.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009525, intron 1 of 4)	MTC|LTR|ERVL-MaLR	9805.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144568965-4	chr3	144568482	144569482	+	923.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355234, intron 1 of 6)	intron (NM_001355234, intron 1 of 6)	1234.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117438605-2	chr2	117438105	117439105	+	923.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95728.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120577946-2	chr11	120577446	120578446	+	923.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133796, exon 6 of 6)	3' UTR (NM_133796, exon 6 of 6)	3674.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	0.0	4.0	4.0	0.0	6.0	5.5
Merged-chr18-38445133-2	chr18	38444633	38445633	+	923.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 2 of 7)	B4A|SINE|B4	26226.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-42968884-3	chr4	42968374	42969374	+	923.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1072.0	NM_026088	67317.0	Mm.478018	NM_026088	ENSMUSG00000028451	1700022I11Rik	-	RIKEN cDNA 1700022I11 gene	protein-coding	10.0	61.5	27.5	8.0	2.0	6.5
Merged-chr4-46123785-2	chr4	46123285	46124285	+	923.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355375, intron 6 of 9)	intron (NM_001355375, intron 6 of 9)	14690.0	NM_173033	272027.0	Mm.249594	NM_173033	ENSMUSG00000035495	Tstd2	3010020C06	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	protein-coding	6.5	0.0	0.0	5.0	0.0	2.0
Merged-chr9-63614767-4	chr9	63614247	63615247	+	922.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	12101.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80706804-4	chr18	80706302	80707302	+	922.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 1 of 9)	intron (NM_198429, intron 1 of 9)	1371.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	9.5	8.0	0.0	11.5	6.0	3.5
Merged-chr18-11860578-4	chr18	11860098	11861098	+	922.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022021, intron 1 of 8)	intron (NM_022021, intron 1 of 8)	-20160.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	0.0	7.5	3.0	0.0	12.0	0.0
Merged-chr9-123932533-3	chr9	123932030	123933030	+	922.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	36162.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143634845-3	chr5	143634345	143635345	+	922.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011182, intron 1 of 12)	intron (NM_011182, intron 1 of 12)	12398.0	NM_011182	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11547219-3	chr11	11546683	11547683	+	922.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57917.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	1.0	5.5	2.5	3.5	1.5	2.5
Merged-chr12-44171628-3	chr12	44171130	44172130	+	922.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38438.0	NM_013760	27362.0	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67003130-11	chr10	67002627	67003627	+	922.939392	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1948.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123252050-3	chr5	123251551	123252551	+	922.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23861.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	0.0	5.0	0.5	2.5	1.0	0.0
Merged-chr7-97129456-4	chr7	97128961	97129961	+	922.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	CT-rich|Low_complexity|Low_complexity	47710.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	7.5	27.0	25.5	7.5	27.0	25.0
Merged-chr9-48282694-2	chr9	48282199	48283199	+	922.9166869999999	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	58199.0	NM_030069	78252.0	Mm.31626	NM_030069	ENSMUSG00000032028	Nxpe2	4432416J03Rik|AI323362|Fam55b	neurexophilin and PC-esterase domain family, member 2	protein-coding	14.0	13.0	4.0	6.0	1.0	0.0
Merged-chr11-75738095-4	chr11	75737582	75738582	+	922.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009536, intron 1 of 5)	intron (NM_009536, intron 1 of 5)	5195.0	NM_009536	22627.0	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	7.5	10.5	8.5	3.5	8.5	9.0
Merged-chr13-45507485-4	chr13	45506996	45507996	+	922.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025508)	promoter-TSS (NM_025508)	52.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	0.5	6.5	6.0	1.0	7.5	4.0
Merged-chr11-80302814-4	chr11	80302312	80303312	+	922.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139228, intron 2 of 8)	intron (NM_139228, intron 2 of 8)	1900.0	NM_139228	246104.0	Mm.194148	NM_139228	ENSMUSG00000017692	Rhbdl3	AI847581|Rhbdl4|Rhomr1|Vrho	rhomboid like 3	protein-coding	0.0	2.0	0.5	0.0	0.5	0.0
Merged-chr19-18624074-4	chr19	18623589	18624589	+	922.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	7724.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-108369814-4	chr4	108369308	108370308	+	922.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099303, intron 2 of 2)	B3|SINE|B2	13847.0	NM_001099303	545667.0	Mm.380025	NM_001099303	ENSMUSG00000059816	Fam159a	Shisal2a	family with sequence similarity 159, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100434027-4	chr7	100433539	100434539	+	922.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 23 of 32)	intron (NM_001017985, intron 23 of 32)	-38952.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	20.5	70.5	28.0	31.0	49.5	23.5
Merged-chr2-51981890-4	chr2	51981403	51982403	+	922.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8695.0	NM_001141948	64685.0	Mm.7491	NM_019401	ENSMUSG00000026946	Nmi	-	N-myc (and STAT) interactor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21691857-4	chr16	21691359	21692359	+	922.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001881, intron 1 of 1)	intron (NM_001001881, intron 1 of 1)	2806.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155564977-4	chr1	155564467	155565467	+	922.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026683, intron 2 of 3)	intron (NM_026683, intron 2 of 3)	6847.0	NM_028250	72482.0	Mm.288249	NM_026683	ENSMUSG00000033701	Acbd6	0610010G04Rik|2610100E10Rik	acyl-Coenzyme A binding domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47513844-4	chr14	47513288	47514288	+	922.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027414, intron 4 of 5)	intron (NR_027414, intron 4 of 5)	41227.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	6.0	56.5	26.5	7.5	15.0	5.0
Merged-chr5-99289324-4	chr5	99288832	99289832	+	922.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-36405.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32387899-4	chr19	32387355	32388355	+	922.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001362423, exon 1 of 10)	5' UTR (NM_001362423, exon 1 of 10)	194.0	NM_001362423	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	4.5	23.0	1.5	1.5	8.0	4.5
Merged-chr4-88464789-4	chr4	88464269	88465269	+	922.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25843.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	3.0	2.5	1.0	0.0	0.0	2.0
Merged-chr1-156066772-2	chr1	156066256	156067256	+	922.900024	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001358627, exon 6 of 6)	3' UTR (NM_001358627, exon 6 of 6)	25895.0	NM_022329	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	70.0	108.0	79.0	1.5	0.0	10.0
Merged-chr6-129398481-6	chr6	129397994	129398994	+	922.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204253, intron 1 of 3)	RLTR21|LTR|ERVK	1197.0	NM_001204239	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-53405094-3	chr5	53404559	53405559	+	922.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137953.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-179517172-4	chr1	179516686	179517686	+	922.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027188, intron 1 of 11)	intron (NM_027188, intron 1 of 11)	855.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180226017-4	chr1	180225508	180226508	+	922.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011183)	TTS (NM_011183)	19942.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12461888-4	chr19	12461468	12462468	+	922.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010821, exon 2 of 2)	exon (NM_010821, exon 2 of 2)	1189.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	131.0	313.0	229.5	130.0	324.0	238.5
Merged-chr11-3142608-4	chr11	3142198	3143198	+	922.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 20 of 32)	intron (NM_030207, intron 20 of 32)	18677.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-42433755-4	chr6	42433260	42434260	+	922.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207028)	promoter-TSS (NM_207028)	-775.0	NM_207028	387353.0	Mm.377914	NM_207028	ENSMUSG00000048284	Tas2r126	T2R12|T2R26|Tas2r26|Tas2r41|mGR26|mt2r35	taste receptor, type 2, member 126	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83687304-4	chr11	83686801	83687801	+	922.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16755.0	NM_001081957	100034251.0	Mm.24097	NM_001081957	ENSMUSG00000069792	Wfdc17	Amwap|Gm11428	WAP four-disulfide core domain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191230651-4	chr1	191230154	191231154	+	922.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6200.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	0.0	6.0	0.0	0.0	0.0	0.5
Merged-chr9-55388335-3	chr9	55387795	55388795	+	922.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172923, intron 3 of 10)	intron (NM_172923, intron 3 of 10)	61382.0	NM_001357568	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-66792298-3	chr4	66791829	66792829	+	922.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35222.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-48121239-2	chr6	48120740	48121740	+	922.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34647.0	NM_001362062	69228.0	Mm.207555	NM_001163475	ENSMUSG00000057691	Zfp746	2810407L07Rik|AI317225|Znf746	zinc finger protein 746	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84011371-4	chr8	84010877	84011877	+	922.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_035431)	TTS (NR_035431)	256.0	NR_035431	100316677.0		NR_035431	ENSMUSG00000080665	Mir1199	Mirn1199|mir-1199|mmu-mir-1199	microRNA 1199	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117883736-4	chr10	117883235	117884235	+	922.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-37761.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101214003-3	chr7	101213507	101214507	+	922.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199012, intron 8 of 20)	intron (NM_199012, intron 8 of 20)	88081.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	6.0	13.5	3.5	1.5	0.0	1.0
Merged-chr14-50936694-6	chr14	50936150	50937150	+	922.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2-int|LTR|ERVL-MaLR	-5801.0	NM_001310507	219024.0	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161|Pip4p1	transmembrane protein 55b	protein-coding	22.5	36.0	9.5	22.5	33.5	9.5
Merged-chr7-128225361-3	chr7	128224848	128225848	+	922.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-12009.0	NM_146205	233912.0	Mm.475117	NM_146205	ENSMUSG00000042178	Armc5	AW049683|BC032200	armadillo repeat containing 5	protein-coding	1.0	16.5	4.0	1.5	12.0	11.5
Merged-chr3-107357000-3	chr3	107356524	107357524	+	922.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23735.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-12836667-3	chr10	12836163	12837163	+	922.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 1 of 73)	intron (NM_011682, intron 1 of 73)	25072.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46599693-3	chr19	46599190	46600190	+	922.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146099, intron 1 of 3)	intron (NM_146099, intron 1 of 3)	584.0	NM_146099	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	23.5	42.5	45.0	6.5	65.5	42.5
Merged-chr5-107749635-3	chr5	107749069	107750069	+	922.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007964, intron 17 of 17)	intron (NM_007964, intron 17 of 17)	-23764.0	NM_001267621	14581.0	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166457558-4	chr2	166457046	166458046	+	922.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015558, intron 2 of 2)	intron (NR_015558, intron 2 of 2)	10095.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118766228-4	chr7	118765712	118766712	+	922.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027815, intron 8 of 30)	intron (NM_027815, intron 8 of 30)	25941.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	6.0	0.0	4.5	2.0	23.5	13.0
Merged-chr12-4539679-4	chr12	4539195	4540195	+	922.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	15582.0	NR_136891	102634330.0	Mm.402324	NR_136891	ENSMUSG00000112422	Gm31938	-	predicted gene, 31938	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-35100536-3	chr4	35100004	35101004	+	922.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-51551.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30000797-3	chr7	30000284	30001284	+	922.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167873, intron 6 of 9)	intron (NM_001167873, intron 6 of 9)	16829.0	NM_001167872	243905.0	Mm.322432	NM_001033355	ENSMUSG00000074221	Zfp568	C80731|Gm1691|Znf568|chato	zinc finger protein 568	protein-coding	2.0	4.5	3.0	0.0	5.5	8.5
Merged-chr16-31898496-3	chr16	31897996	31898996	+	922.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013900, exon 16 of 16)	3' UTR (NM_013900, exon 16 of 16)	19686.0	NM_013900	30060.0	Mm.30988	NM_013900	ENSMUSG00000022780	Meltf	CD228|MTf|Mfi2	melanotransferrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3712545-4	chr7	3712068	3713068	+	922.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011095)	TTS (NM_011095)	7814.0	NM_001357394	18733.0	Mm.326531	NM_011095	ENSMUSG00000058818	Pirb	Gp91|LIR-3|Lilrb3|PIR-B	paired Ig-like receptor B	protein-coding	21.5	46.5	30.5	20.0	32.0	40.5
Merged-chr15-90669677-3	chr15	90669162	90670162	+	922.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033851, intron 1 of 3)	intron (NM_001033851, intron 1 of 3)	9726.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	9.5	24.5	12.5	12.5	28.0	15.5
Merged-chr1-174043882-4	chr1	174043379	174044379	+	922.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_146717)	TTS (NM_146717)	1946.0	NM_146717	258712.0	Mm.223146	NM_146717	ENSMUSG00000045381	Olfr433	MOR123-1	olfactory receptor 433	protein-coding	8.5	65.5	52.5	52.0	41.0	32.0
Merged-chr10-41980941-4	chr10	41980448	41981448	+	922.7625119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 5 of 17)	MIRc|SINE|MIR	37434.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34034271-4	chr17	34033718	34034718	+	922.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205214, intron 4 of 9)	intron (NM_001205214, intron 4 of 9)	1868.0	NM_001205215	20182.0	Mm.1243	NM_011306	ENSMUSG00000039656	Rxrb	AL023085|H-2RIIBP|Nr2b2|RCoR-1|Rub	retinoid X receptor beta	protein-coding	3.0	21.0	11.0	8.5	8.5	10.0
Merged-chr1-172368959-4	chr1	172368495	172369495	+	922.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001039484, exon 2 of 2)	exon (NM_001039484, exon 2 of 2)	-7536.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	25.5	47.5	23.0	15.5	60.0	65.0
Merged-chr4-88763585-4	chr4	88763096	88764096	+	922.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	2822.0	NM_001085531	545645.0	Mm.489553	NM_001085531	ENSMUSG00000100505	Gm13283	EG545645	predicted gene 13283	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131494626-3	chr2	131494173	131495173	+	922.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177840, intron 1 of 3)	intron (NM_001177840, intron 1 of 3)	2811.0	NM_001177838	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123412947-2	chr8	123412447	123413447	+	922.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_023279, intron 1 of 3)	intron (NM_023279, intron 1 of 3)	1383.0	NM_023279	22152.0	Mm.40068	NM_023279	ENSMUSG00000062380	Tubb3	3200002H15Rik|M(beta)3|M(beta)6	tubulin, beta 3 class III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156039044-2	chr1	156038520	156039520	+	922.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172843, intron 1 of 6)	B1_Mm|SINE|Alu	-1820.0	NM_001358626	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	7.5	24.0	9.5	2.0	19.0	7.0
Merged-chr14-62844031-4	chr14	62843568	62844568	+	922.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	6347.0	NR_106174	102465889.0		NR_106174	ENSMUSG00000099245	Mir8098	Gm27462|mmu-mir-8098	microRNA 8098	ncRNA	2.5	16.5	17.0	6.0	16.0	19.0
Merged-chr2-129632496-2	chr2	129632017	129633017	+	922.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291021)	TTS (NM_001291021)	37055.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	105.0	290.5	193.5	138.5	286.0	201.0
Merged-chr7-114020853-4	chr7	114020350	114021350	+	922.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145584, intron 7 of 15)	intron (NM_145584, intron 7 of 15)	96931.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	0.0	0.5	0.0	2.5	0.0	0.0
Merged-chr18-61895065-3	chr18	61894562	61895562	+	922.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198649, intron 1 of 22)	intron (NM_198649, intron 1 of 22)	16762.0	NM_198649	319713.0	Mm.329478	NM_198649	ENSMUSG00000032735	Ablim3	AW990719|D930036B08Rik	actin binding LIM protein family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-7316009-4	chr17	7315530	7316530	+	922.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8630.0	NM_011553	21461.0	Mm.264651	NM_011553	ENSMUSG00000071322	Tcp10a	D17Leh66A|D17Leh66aa|Gm10326|T66A-a|Tcp-10a	t-complex protein 10a	protein-coding	10.0	0.0	0.0	10.0	0.0	0.0
Merged-chr15-79343015-4	chr15	79342530	79343530	+	922.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3591.0	NM_001304830	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31369284-3	chr15	31368751	31369751	+	922.7000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1492.0	NM_027496	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56655825-3	chr19	56655324	56656324	+	922.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66548.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69421446-2	chr11	69420946	69421946	+	922.68335	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 84 of 85)	intron (NM_001081330, intron 84 of 85)	-7771.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr3-59208931-5	chr3	59208435	59209435	+	922.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028808, exon 2 of 2)	3' UTR (NM_028808, exon 2 of 2)	1947.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43949023-3	chr5	43948517	43949517	+	922.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32782.0	NM_008009	14181.0	Mm.46053	NM_008009	ENSMUSG00000048373	Fgfbp1	FGF-BP|FGF-BP1|FGFBP-1	fibroblast growth factor binding protein 1	protein-coding	4.5	3.5	0.0	2.5	8.5	0.0
Merged-chr6-146207670-3	chr6	146207137	146208137	+	922.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 45 of 56)	intron (NM_019923, intron 45 of 56)	273515.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56523765-3	chr18	56523262	56524262	+	922.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14377.0	NR_106160	102465790.0		NR_106160	ENSMUSG00000099196	Mir1258	Gm27371|mmu-mir-1258	microRNA 1258	ncRNA	0.0	2.5	0.0	0.0	2.0	0.0
Merged-chr2-118547796-8	chr2	118547288	118548288	+	922.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311140)	promoter-TSS (NM_001311140)	-189.0	NM_001311140	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	2.5	4.5	5.5	3.5	15.0	4.0
Merged-chr2-123887807-3	chr2	123887258	123888258	+	922.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-202211.0	NM_001290997	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-8102763-4	chr14	8102234	8103234	+	922.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	4523.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128968280-3	chr2	128967798	128968798	+	922.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178404, intron 1 of 11)	(T)n|Simple_repeat|Simple_repeat	896.0	NM_178404	78751.0	Mm.26377	NM_178404	ENSMUSG00000042851	Zc3h6	4631426G04Rik|4833425H18Rik|AU024389|AW060453|Zc3hdc6|mKIAA2035	zinc finger CCCH type containing 6	protein-coding	1.0	8.0	4.5	8.5	6.0	2.5
Merged-chr8-25101246-2	chr8	25100746	25101746	+	922.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155282)	promoter-TSS (NR_155282)	565.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79529357-2	chr11	79528829	79529829	+	922.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033711, intron 1 of 1)	intron (NM_001033711, intron 1 of 1)	1280.0	NM_146023	101488212.0	Mm.439665	NM_146023	ENSMUSG00000070354	Evi2	Evi2a-evi2b|Gm21975	ecotropic viral integration site 2	protein-coding	137.0	368.0	197.5	120.0	350.0	212.5
Merged-chr16-91599198-2	chr16	91598698	91599698	+	922.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1518.0	NM_030018	77975.0	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135722294-4	chr1	135721781	135722781	+	922.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360782, intron 1 of 5)	B4A|SINE|B4	2218.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112895970-4	chr12	112895473	112896473	+	922.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCa|LINE|L1	24568.0	NR_105906	102465567.0		NR_105906	ENSMUSG00000098338	Mir6941	Gm27923|mmu-mir-6941	microRNA 6941	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-193145355-4	chr1	193144854	193145854	+	922.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7758.0	NM_016851	54139.0	Mm.273695	NM_016851	ENSMUSG00000026638	Irf6	AI876454|E230028I05Rik|mirf6	interferon regulatory factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107638281-4	chr11	107637788	107638788	+	922.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_105897)	TTS (NR_105897)	566.0	NR_105897	102465562.0		NR_105897	ENSMUSG00000098497	Mir6932	Gm27691|mmu-mir-6932	microRNA 6932	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129562577-3	chr2	129562072	129563072	+	922.599976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25970.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-47225524-4	chr13	47225014	47226014	+	922.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 3 of 7)	intron (NM_146042, intron 3 of 7)	31511.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	84.0	217.0	129.5	63.0	202.5	127.5
Merged-chr5-134519984-2	chr5	134519509	134520509	+	922.5833130000001	f0_balb.idr|f0_c57.idr	intron (NM_001039162, intron 3 of 15)	MTD|LTR|ERVL-MaLR	32425.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8927713-4	chr4	8927219	8928219	+	922.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	176395.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	6.0	1.0	3.0	9.5	1.5	1.5
Merged-chr5-74964427-3	chr5	74963940	74964940	+	922.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045866, intron 4 of 4)	intron (NR_045866, intron 4 of 4)	15246.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	0.0	10.5	1.0	2.0	0.0	1.0
Merged-chr8-41245298-4	chr8	41244803	41245803	+	922.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023662, intron 1 of 37)	RMER6B|LTR|ERVK	5544.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	10.5	16.5	36.0	10.0	9.0	13.5
Merged-chr9-40318970-3	chr9	40318453	40319453	+	922.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	2370.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4856340-3	chr19	4855839	4856839	+	922.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019861, intron 4 of 13)	intron (NM_019861, intron 4 of 13)	1210.0	NM_019861	56464.0	Mm.29561	NM_019861	ENSMUSG00000083282	Ctsf	AI481912	cathepsin F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55702936-4	chr19	55702428	55703428	+	922.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045318)	promoter-TSS (NR_045318)	-724.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	36.0	37.0	34.5	45.0	61.5	31.0
Merged-chr8-117415754-4	chr8	117415278	117416278	+	922.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 4 of 20)	MTD|LTR|ERVL-MaLR	-37245.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6891311-4	chr19	6890808	6891808	+	922.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-18390.0	NM_001166370	67674.0	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-64852695-4	chr16	64852186	64853186	+	922.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347245)	promoter-TSS (NM_001347245)	685.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-58801363-4	chr2	58800853	58801853	+	922.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46169.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107385511-2	chr11	107385011	107386011	+	922.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	B3|SINE|B2	85209.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32118311-2	chr17	32117811	32118811	+	922.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26888.0	NR_027316	435518.0	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7057298-2	chr19	7056798	7057798	+	922.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134147, intron 1 of 10)	intron (NM_134147, intron 1 of 10)	530.0	NM_134147	107227.0	Mm.439977	NM_134147	ENSMUSG00000036278	Macrod1	AI604841|AW743046|D930010J01Rik|Lrp16	MACRO domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64086002-2	chr17	64085502	64086502	+	922.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 16 of 18)	intron (NM_001037997, intron 16 of 18)	-35330.0	NR_130982	68771.0	Mm.443351	NR_130982		1110058D11Rik	-	RIKEN cDNA 1110058D11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50755242-2	chr16	50754769	50755769	+	922.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-22496.0	NR_028300	68190.0	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-66436096-2	chr8	66435596	66436596	+	922.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 6 of 7)	intron (NM_175188, intron 6 of 7)	49795.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86415136-2	chr1	86414636	86415636	+	922.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11193.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35664765-2	chr18	35664265	35665265	+	922.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21A|LTR|ERV1	-2579.0	NM_029485	71242.0	Mm.151498	NM_027733	ENSMUSG00000024352	Spata24	2700012K08Rik|4930583E11Rik|5133400G04Rik|AU016220|TIPT|TIPT2	spermatogenesis associated 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76285685-4	chr15	76285207	76286207	+	922.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028852, intron 4 of 4)	B2_Mm2|SINE|B2	5261.0	NR_037240	100526548.0		NR_037240	ENSMUSG00000093169	Mir3079	mmu-mir-3079	microRNA 3079	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95829379-2	chr11	95828879	95829879	+	922.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163464)	TTS (NM_001163464)	4879.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-83957079-4	chr9	83956598	83957598	+	922.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199195, intron 3 of 10)	intron (NM_199195, intron 3 of 10)	8317.0	NM_199195	12040.0	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-53247560-3	chr9	53247048	53248048	+	922.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029936, intron 1 of 17)	intron (NM_029936, intron 1 of 17)	564.0	NM_029936	77591.0	Mm.133560	NM_029936	ENSMUSG00000053289	Ddx10	4632415A01Rik|AI646054	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132806996-4	chr4	132806500	132807500	+	922.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-10636.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	37.5	94.0	80.0	28.0	138.5	89.0
Merged-chr7-101947341-4	chr7	101946831	101947831	+	922.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-13474.0	NM_001162974	69358.0	Mm.214841	NM_027053	ENSMUSG00000064307	Lrrc51	1700008D07Rik|Lrtomt	leucine rich repeat containing 51	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77489002-2	chr11	77488502	77489502	+	922.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172945, intron 1 of 15)	intron (NM_172945, intron 1 of 15)	676.0	NM_172945	268445.0	Mm.39296	NM_172945	ENSMUSG00000037907	Ankrd13b	AW124583|B930093C12Rik	ankyrin repeat domain 13b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52062664-2	chr13	52062164	52063164	+	922.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34077.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-42248863-4	chr13	42248352	42249352	+	922.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52624.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63357220-4	chr4	63356736	63357736	+	922.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013623, intron 3 of 5)	intron (NM_013623, intron 3 of 5)	1074.0	NM_013623	18407.0	Mm.381399	NM_013623	ENSMUSG00000028359	Orm3	Agp-3|Orm-3	orosomucoid 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191180084-3	chr1	191179509	191180509	+	922.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007498, intron 1 of 3)	intron (NM_007498, intron 1 of 3)	3324.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-74967062-4	chr10	74966592	74967592	+	922.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010311)	promoter-TSS (NM_010311)	-85.0	NM_010311	14687.0	Mm.32595	NM_010311	ENSMUSG00000040009	Gnaz	AI847979|Gz	guanine nucleotide binding protein, alpha z subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70210873-1	chr8	70210373	70211373	+	922.5	f1_balb.idr	intron (NM_001007570, intron 1 of 7)	intron (NM_001007570, intron 1 of 7)	1408.0	NM_001007570	73095.0	Mm.185413	NM_001007570	ENSMUSG00000002346	Slc25a42	2900084M01Rik	solute carrier family 25, member 42	protein-coding	3.0	3.5	3.0	0.0	3.0	1.0
Merged-chr7-97108310-3	chr7	97107805	97108805	+	922.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	26554.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	3.0	11.5	19.0	5.5	18.5	5.5
Merged-chr15-83351466-2	chr15	83350966	83351966	+	922.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-1219.0	NM_001357757	66251.0	Mm.258910	NM_025445	ENSMUSG00000054277	Arfgap3	0610009H19Rik|1810004P07Rik|1810035F16Rik|9130416J18Rik|Arfgap1	ADP-ribosylation factor GTPase activating protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83654861-3	chr6	83654406	83655406	+	922.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016751, intron 2 of 6)	intron (NM_016751, intron 2 of 6)	1210.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	80.5	93.0	181.0	56.5	68.5	183.0
Merged-chr1-87634738-2	chr1	87634238	87635238	+	922.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	14426.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124307056-2	chr6	124306556	124307556	+	922.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_053094, exon 3 of 17)	exon (NM_053094, exon 3 of 17)	2405.0	NM_053094	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45599846-3	chr14	45599371	45600371	+	922.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176845, intron 11 of 12)	intron (NM_176845, intron 11 of 12)	56161.0	NR_045809	67651.0	Mm.55930	NR_045809	ENSMUSG00000115324	4930527F14Rik	-	RIKEN cDNA 4930527F14 gene	ncRNA	0.0	3.5	11.5	0.0	1.5	7.5
Merged-chr9-37460124-2	chr9	37459624	37460624	+	922.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26949.0	NM_001164767	19649.0	Mm.212826	NM_011248	ENSMUSG00000032128	Robo3	Rbig1|Rig-1|Rig1|Robo3a|Robo3b	roundabout guidance receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100653079-2	chr13	100652579	100653579	+	922.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015889, intron 1 of 2)	intron (NM_001015889, intron 1 of 2)	1472.0	NM_001015889	108143.0	Mm.301148	NM_027139	ENSMUSG00000052293	Taf9	2310012M09Rik|AA673500|AU045423|TAFII31|TAFII32|Taf2g	TATA-box binding protein associated factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141031930-4	chr4	141031432	141032432	+	922.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145958, intron 19 of 35)	intron (NM_001145958, intron 19 of 35)	21295.0	NM_008546	17150.0	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34803701-2	chr2	34803201	34804201	+	922.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013890)	TTS (NM_013890)	-3789.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88352857-4	chr10	88352360	88353360	+	922.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 1 of 6)	intron (NM_027878, intron 1 of 6)	4215.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98831334-4	chr12	98830827	98831827	+	922.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081191, intron 21 of 43)	intron (NM_001081191, intron 21 of 43)	60305.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73302231-4	chr17	73301722	73302722	+	922.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97074.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-77092642-4	chr12	77092144	77093144	+	922.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130396.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69374607-3	chr12	69374111	69375111	+	922.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007481, exon 2 of 2)	3' UTR (NM_007481, exon 2 of 2)	2461.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-16160195-3	chr4	16159701	16160701	+	922.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138102, intron 1 of 11)	intron (NR_138102, intron 1 of 11)	3442.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-38503691-3	chr13	38503217	38504217	+	922.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289599, intron 8 of 9)	intron (NM_001289599, intron 8 of 9)	24197.0	NM_001289599	105245.0	Mm.28622	NM_145367	ENSMUSG00000038991	Txndc5	AL022641|ERp46|PC-TRP	thioredoxin domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114934429-4	chr11	114933926	114934926	+	922.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199221)	promoter-TSS (NM_199221)	-40.0	NM_199221	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	10.5	47.5	36.5	17.0	52.0	65.0
Merged-chr7-67342297-2	chr7	67341797	67342797	+	922.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 2 of 11)	intron (NM_001357324, intron 2 of 11)	30561.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75590046-5	chr10	75589591	75590591	+	922.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359425, intron 1 of 7)	intron (NM_001359425, intron 1 of 7)	710.0	NR_153110	23887.0	Mm.257927	NM_011820	ENSMUSG00000006344	Ggt5	AI551243|GGL|GGT-REL|Ggtla1	gamma-glutamyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79448791-3	chr8	79448318	79449318	+	922.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-49350.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-129501573-4	chr7	129501077	129502077	+	922.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-90286.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50593161-4	chr9	50592664	50593664	+	922.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10685.0	NM_025848	66925.0	Mm.10406	NM_025848	ENSMUSG00000000171	Sdhd	3110001M13Rik|AVLL5809|C78570|PRO19626	succinate dehydrogenase complex, subunit D, integral membrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19927006-4	chr7	19926523	19927523	+	922.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5880.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-145119666-4	chr5	145119171	145120171	+	922.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023142, intron 1 of 9)	intron (NM_023142, intron 1 of 9)	5415.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139196700-4	chr4	139196190	139197190	+	922.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	2579.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	30.5	135.0	44.5	51.5	127.0	93.0
Merged-chr3-27939058-4	chr3	27938567	27939567	+	922.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164056, intron 1 of 26)	CpG	387.0	NM_001164056	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27268964-4	chr3	27268435	27269435	+	922.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-48142.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-185196512-4	chr1	185196036	185197036	+	922.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7632.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	14.0	6.5	23.0	5.5	11.5	33.0
Merged-chr12-85659526-4	chr12	85658995	85659995	+	922.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27225.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84925753-2	chr8	84925253	84926253	+	922.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019945, intron 7 of 25)	intron (NM_019945, intron 7 of 25)	11600.0	NM_019945	56527.0	Mm.154614	NM_019945	ENSMUSG00000053693	Mast1	9430008B02Rik|SAST|SAST170	microtubule associated serine/threonine kinase 1	protein-coding	4.5	4.0	0.0	1.0	8.0	5.5
Merged-chr11-107344011-2	chr11	107343511	107344511	+	922.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	126709.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105064606-2	chr5	105064106	105065106	+	922.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-11045.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131253875-3	chr1	131253400	131254400	+	922.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019777)	TTS (NM_019777)	-8722.0	NM_018750	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	0.0	2.5	1.5	0.0	0.0	0.0
Merged-chr13-110363938-4	chr13	110363427	110364427	+	922.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6755.0	NM_177713	238875.0	Mm.30533	NM_177713	ENSMUSG00000046006	Gapt	9830130M13Rik	Grb2-binding adaptor, transmembrane	protein-coding	10.0	9.0	7.5	5.0	0.0	8.0
Merged-chr1-132391785-4	chr1	132391274	132392274	+	922.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178874)	promoter-TSS (NM_178874)	-388.0	NM_178874	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-126979589-6	chr10	126979138	126980138	+	922.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113470, intron 1 of 7)	CpG	921.0	NM_001113470	52468.0	Mm.29490	NM_146012	ENSMUSG00000078429	Ctdsp2	AI586070|D10Ertd73e|OS-4|OS4|SCP2	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-3345448-3	chr6	3344927	3345927	+	922.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54144.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	1.5	3.0	4.0	0.0	0.0	0.0
Merged-chr18-80420265-3	chr18	80419771	80420771	+	922.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 12 of 12)	intron (NM_026295, intron 12 of 12)	49396.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	10.5	16.5	8.5	10.0	12.0	4.0
Merged-chr4-40774863-3	chr4	40774363	40775363	+	922.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16978.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109478769-3	chr3	109478252	109479252	+	922.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	-95255.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.0	8.5	16.5	11.5	17.5	15.0
Merged-chr10-87722505-4	chr10	87722001	87723001	+	922.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-135764.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	7.0	6.0	3.5	3.5	1.0	2.0
Merged-chr13-52277385-4	chr13	52276888	52277888	+	922.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	180647.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30654658-2	chr7	30654155	30655155	+	922.2999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_027999, intron 17 of 18)	intron (NM_027999, intron 17 of 18)	-4427.0	NM_133693	68035.0	Mm.401747	NM_133693	ENSMUSG00000036733	Rbm42	1700003D06Rik|3100004P22Rik	RNA binding motif protein 42	protein-coding	0.5	4.0	1.0	8.5	22.5	14.0
Merged-chr17-8214568-4	chr17	8214044	8215044	+	922.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21499.0	NM_001190333	12458.0	Mm.8007	NM_009835	ENSMUSG00000040899	Ccr6	CC-CKR-6|CCR-6|Cmkbr6|KY411	chemokine (C-C motif) receptor 6	protein-coding	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr4-134922434-4	chr4	134921971	134922971	+	922.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1154.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31440906-4	chr14	31440384	31441384	+	922.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4784.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30385671-4	chr16	30385203	30386203	+	922.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128096, intron 2 of 33)	intron (NM_001128096, intron 2 of 33)	2827.0	NM_001128094	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	19.5	40.0	23.5	16.5	32.0	22.5
Merged-chr5-123133574-4	chr5	123133047	123134047	+	922.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175092)	promoter-TSS (NM_175092)	-918.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171130037-3	chr1	171129522	171130522	+	922.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025321, intron 5 of 5)	intron (NM_025321, intron 5 of 5)	8361.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73600361-4	chr13	73599851	73600851	+	922.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3651.0	NM_146047	218335.0	Mm.30099	NM_146047	ENSMUSG00000021610	Clptm1l	C130052I12Rik|Crr9	CLPTM1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-122901213-4	chr9	122900716	122901716	+	922.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2030.0	NM_001353989	666257.0	Mm.390242	NM_001353989		Gm8008	EG666257|Znf660	predicted gene 8008	protein-coding	12.0	18.5	15.5	11.0	6.0	5.0
Merged-chr9-66877575-4	chr9	66877073	66878073	+	922.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	42132.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43898692-4	chr19	43898204	43899204	+	922.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028029, intron 4 of 15)	intron (NM_028029, intron 4 of 15)	-18936.0	NM_001306088	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30508251-4	chr7	30507748	30508748	+	922.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019546, intron 7 of 9)	intron (NM_019546, intron 7 of 9)	-6874.0	NR_036630	100504207.0	Mm.297831	NM_001004161	ENSMUSG00000062132	Arhgap33os	Gm1082	Rho GTPase activating protein 33, opposite strand	ncRNA	9.0	29.5	37.5	7.0	4.0	4.0
Merged-chr10-7045839-4	chr10	7045339	7046339	+	922.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-22654.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-52748432-4	chr1	52747923	52748923	+	922.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21065.0	NM_001357464	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	14.5	5.5	2.0	3.0	4.0	1.0
Merged-chr8-128680138-3	chr8	128679594	128680594	+	922.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5560.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90386367-4	chr16	90385911	90386911	+	922.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015755)	promoter-TSS (NM_015755)	14.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-19904180-4	chr14	19903697	19904697	+	922.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285910, intron 1 of 2)	intron (NM_001285910, intron 1 of 2)	65272.0	NR_105025	52512.0	Mm.483998	NR_105025	ENSMUSG00000114350	D14Ertd670e	-	DNA segment, Chr 14, ERATO Doi 670, expressed	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-10307794-4	chr3	10307288	10308288	+	922.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6605.0	NM_029310	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58408965-3	chr16	58408482	58409482	+	922.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356484, intron 1 of 15)	CpG	447.0	NM_028523	73379.0	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-41021004-4	chr14	41020518	41021518	+	922.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-7185.0	NM_001316737	70564.0	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-14349789-10	chr14	14349331	14350331	+	922.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008369, intron 5 of 11)	intron (NM_008369, intron 5 of 11)	3336.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117663648-4	chr11	117663152	117664152	+	922.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 1 of 21)	intron (NM_198022, intron 1 of 21)	9363.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-41006473-3	chr8	41005986	41006986	+	922.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 7 of 13)	intron (NM_001005863, intron 7 of 13)	-10982.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	97.0	143.0	114.5	78.0	190.5	97.0
Merged-chr17-33865633-4	chr17	33865141	33866141	+	922.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21092.0	NR_128569	104796139.0		NR_128569	ENSMUSG00000098621	Gm27740	Mir6967-2|mmu-mir-6967-2	predicted gene, 27740	ncRNA	3.0	8.0	8.5	7.0	1.0	7.5
Merged-chr16-30722531-4	chr16	30722030	30723030	+	922.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122807.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	11.5	23.5	9.5	13.0	7.0	10.0
Merged-chr16-33886803-4	chr16	33886298	33887298	+	922.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 5 of 14)	intron (NM_001145884, intron 5 of 14)	57133.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105721259-2	chr3	105720740	105721740	+	922.1666869999999	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175398)	TTS (NM_175398)	15782.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	2.0	3.5	6.5	3.5	0.0	9.0
Merged-chr15-38301780-3	chr15	38301349	38302349	+	922.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1138.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31834219-2	chr17	31833719	31834719	+	922.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21585.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	0.5	10.0	3.5	0.0	2.5	1.0
Merged-chr19-10000650-2	chr19	10000150	10001150	+	922.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011913, intron 1 of 11)	intron (NM_011913, intron 1 of 11)	983.0	NM_011913	24115.0	Mm.31577	NM_011913	ENSMUSG00000037418	Best1	Bmd|Vmd2|mBest1	bestrophin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54630323-5	chr11	54629805	54630805	+	922.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 11 of 28)	(TG)n|Simple_repeat|Simple_repeat	34159.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-33484773-4	chr6	33484257	33485257	+	922.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 9 of 17)	intron (NM_009148, intron 9 of 17)	235629.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5506449-2	chr6	5505949	5506949	+	922.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10171.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76279245-4	chr14	76278744	76279744	+	922.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27782.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100183153-2	chr12	100182653	100183653	+	922.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4815.0	NR_045282	100038378.0	Mm.387075	NR_045282	ENSMUSG00000072884	Gm10433	-	predicted gene 10433	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61209697-2	chr18	61209153	61210153	+	922.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_007885, intron 1 of 3)	intron (NM_007885, intron 1 of 3)	1943.0	NM_007885	13521.0	Mm.24803	NM_007885	ENSMUSG00000034320	Slc26a2	Dtd|ST-OB	solute carrier family 26 (sulfate transporter), member 2	protein-coding	0.0	1.5	3.5	0.0	1.5	7.5
Merged-chr2-129911603-3	chr2	129911069	129912069	+	922.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100771.0	NM_009374	21818.0	Mm.2961	NM_009374	ENSMUSG00000027401	Tgm3	AI893889|TG E|TG(E)|TGE|TGase E|TGase-3|we	transglutaminase 3, E polypeptide	protein-coding	0.0	0.0	1.0	10.5	54.5	26.0
Merged-chr4-55630447-3	chr4	55629942	55630942	+	922.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97967.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	21.5	70.5	37.5	21.5	55.5	46.0
Merged-chr19-21052080-3	chr19	21051575	21052575	+	922.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52635.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191965244-4	chr1	191964734	191965734	+	922.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12136.0	NM_001177900	74023.0	Mm.274393	NM_023727	ENSMUSG00000049353	Rd3	3322402L07Rik|rd-3|rd3	retinal degeneration 3	protein-coding	1.5	0.0	0.0	0.5	0.0	0.5
Merged-chr6-29998969-4	chr6	29998474	29999474	+	922.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	13645.0	NR_040263	76419.0	Mm.84522	NR_040263	ENSMUSG00000045709	Smkr-ps	1700023L04Rik	smal lysine rich protein 1, pseudogene	ncRNA	3.0	19.0	8.0	7.5	8.0	5.5
Merged-chr11-72461796-4	chr11	72461279	72462279	+	922.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153060, intron 3 of 12)	L1ME3Cz|LINE|L1	13248.0	NM_001276383	216892.0	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-133960876-4	chr6	133960390	133961390	+	922.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74810.0	NM_001303102	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	2.5	1.0	1.0	1.0	7.0	2.5
Merged-chr12-102391085-10	chr12	102390555	102391555	+	922.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001161365)	TTS (NM_001161365)	48758.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120795697-4	chr6	120795186	120796186	+	922.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007510, exon 9 of 9)	3' UTR (NM_007510, exon 9 of 9)	21918.0	NM_001081048	71803.0	Mm.425340	NM_001081048	ENSMUSG00000004902	Slc25a18	1500015I14Rik|AW125787	solute carrier family 25 (mitochondrial carrier), member 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120117073-3	chr8	120116553	120117553	+	922.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172286, intron 1 of 12)	L2a|LINE|L2	2901.0	NM_001163761	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80091464-5	chr7	80090895	80091895	+	922.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001146000, exon 6 of 6)	3' UTR (NM_001146000, exon 6 of 6)	-16138.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130786853-2	chr4	130786353	130787353	+	922.0625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5684.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86364602-4	chr6	86364100	86365100	+	922.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1083.0	NM_025591	66488.0	Mm.422972	NM_025591	ENSMUSG00000057497	Fam136a	2010309E21Rik|AW124904|Hyccin	family with sequence similarity 136, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-117198526-4	chr13	117198035	117199035	+	922.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-22038.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78522040-4	chr9	78521534	78522534	+	922.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	-40310.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129069039-4	chr4	129068519	129069519	+	922.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 1 of 8)	intron (NM_029219, intron 1 of 8)	10748.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64190953-4	chr1	64190456	64191456	+	922.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69567.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161479999-3	chr1	161479511	161480511	+	922.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14646.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	7.0	2.0	9.0	0.0	4.5	9.0
Merged-chr19-55702080-2	chr19	55701580	55702580	+	922.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 1 of 3)	intron (NR_045318, intron 1 of 3)	124.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	3.5	27.0	16.0	32.5	19.0	11.5
Merged-chr12-71836150-4	chr12	71835659	71836659	+	922.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026102, intron 1 of 25)	intron (NM_026102, intron 1 of 25)	5091.0	NM_172464	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35765538-4	chr16	35765040	35766040	+	922.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	MER57-int|LTR|ERV1	3816.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	59.5	170.5	57.5	74.5	126.0	81.5
Merged-chr13-111941378-1	chr13	111940878	111941878	+	922.0	f0_balb.idr	Intergenic	PB1D10|SINE|Alu	73442.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22266678-2	chr16	22266178	22267178	+	922.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009186)	promoter-TSS (NM_009186)	-673.0	NM_001330555	20462.0	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145240340-4	chr4	145239829	145240829	+	922.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	6541.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90120003-2	chr16	90119503	90120503	+	922.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22234.0	NR_033476	100038709.0	Mm.484070	NR_033476		Gm10789	-	predicted gene 10789	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-74974676-4	chr7	74974164	74975164	+	922.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55547.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77839672-6	chr15	77839198	77840198	+	922.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	2477.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84884960-2	chr2	84884460	84885460	+	922.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199223, intron 1 of 2)	intron (NM_199223, intron 1 of 2)	1732.0	NM_199223	269295.0	Mm.86447	NM_199223	ENSMUSG00000050896	Rtn4rl2	Ngr2|Ngrh1|Ngrl3	reticulon 4 receptor-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144294463-3	chr2	144293951	144294951	+	922.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	23547.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136150722-2	chr4	136150219	136151219	+	922.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6897.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85625441-1	chr1	85624941	85625941	+	922.0	f1_balb.idr	intron (NM_001013817, intron 7 of 16)	intron (NM_001013817, intron 7 of 16)	-21550.0	NM_175397	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34785383-2	chr2	34784883	34785883	+	922.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145522, intron 5 of 7)	ID_B1|SINE|B4	13293.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70837158-2	chr8	70836658	70837658	+	922.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027560, exon 5 of 8)	exon (NM_027560, exon 5 of 8)	2562.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	10.0	0.0	1.0	0.0	0.0	0.0
Merged-chr19-34553660-4	chr19	34553152	34554152	+	922.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355262, intron 1 of 2)	MLT2F|LTR|ERVL	2564.0	NM_001355262	15958.0	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58996667-4	chr13	58996185	58997185	+	922.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	188988.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	27.0	68.0	58.5	50.0	64.0	67.5
Merged-chr12-102454758-2	chr12	102454253	102455253	+	922.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-14381.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	157.0	252.0	285.0	125.5	218.0	234.0
Merged-chr4-9790757-3	chr4	9790254	9791254	+	922.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030693, intron 3 of 3)	intron (NR_030693, intron 3 of 3)	20169.0	NR_030693	320152.0	Mm.159946	NR_030693		4930412C18Rik	5730591J02Rik	RIKEN cDNA 4930412C18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90213401-2	chr9	90212901	90213901	+	922.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 10 of 12)	intron (NM_194334, intron 10 of 12)	50423.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135237534-2	chr4	135237034	135238034	+	922.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 2 of 5)	intron (NM_013885, intron 2 of 5)	35226.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142559757-3	chr3	142559255	142560255	+	922.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018734)	promoter-TSS (NM_018734)	-289.0	NM_001289492	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	51.0	122.0	42.0	44.0	99.5	61.5
Merged-chr3-80079954-2	chr3	80079454	80080454	+	922.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	194024.0	NM_133187	68659.0	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37861021-2	chr13	37860521	37861521	+	922.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	-27413.0	NR_033218	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92702179-1	chr16	92701679	92702679	+	922.0	f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-4850.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	4.5	6.5	4.5	14.0	16.5	4.5
Merged-chr10-96610139-2	chr10	96609639	96610639	+	922.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6862.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-98436333-2	chr4	98435833	98436833	+	922.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005784, intron 11 of 19)	intron (NM_001005784, intron 11 of 19)	25306.0	NM_001355177	12695.0	Mm.90218	NM_007704	ENSMUSG00000061859	Patj	Cipp|Inadl	PATJ, crumbs cell polarity complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46846673-2	chr8	46846173	46847173	+	922.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152560, exon 8 of 8)	non-coding (NR_152560, exon 8 of 8)	106928.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-63822179-4	chr7	63821686	63822686	+	921.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94671.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110167859-2	chr11	110167400	110168400	+	921.974976	f1_balb.idr|f1_c57bl6.idr	intron (NM_147220, intron 1 of 38)	intron (NM_147220, intron 1 of 38)	253.0	NM_147220	217262.0	Mm.291459	NM_147220	ENSMUSG00000041797	Abca9	D630040K07Rik	ATP-binding cassette, sub-family A (ABC1), member 9	protein-coding	8.0	15.5	15.5	12.5	22.0	14.5
Merged-chr4-141832427-4	chr4	141831939	141832939	+	921.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-6434.0	NM_007919	13706.0	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	15.5	22.0	25.0	3.5	5.5	12.5
Merged-chr17-57017564-4	chr17	57017062	57018062	+	921.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6274.0	NM_133801	98053.0	Mm.24632	NM_133801	ENSMUSG00000002658	Gtf2f1	2810405L04Rik|C76800|RAP74	general transcription factor IIF, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-100948718-4	chr10	100948214	100949214	+	921.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-207079.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-136321541-4	chr7	136321040	136322040	+	921.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27875.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152737441-5	chr2	152736911	152737911	+	921.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010495)	TTS (NM_010495)	1160.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	28.0	67.0	48.0	25.0	46.5	43.5
Merged-chr12-112674540-5	chr12	112674112	112675112	+	921.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165894)	promoter-TSS (NM_001165894)	272.0	NM_001331107	11651.0	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5807265-4	chr18	5806739	5807739	+	921.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	214592.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	1.5	5.5	0.5	1.5	5.0	3.0
Merged-chr1-185207995-4	chr1	185207478	185208478	+	921.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163754, intron 1 of 34)	MTC|LTR|ERVL-MaLR	3810.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153092864-4	chr2	153092362	153093362	+	921.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15606.0	NM_001172117	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	29.0	59.0	39.5	21.0	32.0	33.5
Merged-chr3-22021709-4	chr3	22021225	22022225	+	921.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54927.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-144000510-10	chr1	144000005	144001005	+	921.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009061, exon 5 of 5)	3' UTR (NM_009061, exon 5 of 5)	3644.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-119207435-6	chr12	119206913	119207913	+	921.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177290, intron 2 of 13)	intron (NM_177290, intron 2 of 13)	30863.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34043032-4	chr11	34042526	34043526	+	921.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	A-rich|Low_complexity|Low_complexity	-3902.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67625584-3	chr10	67625103	67626103	+	921.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-53644.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51918058-4	chr11	51917615	51918615	+	921.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49516.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-102694255-5	chr13	102693751	102694751	+	921.8800050000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360519, intron 1 of 2)	intron (NM_001360519, intron 1 of 2)	693.0	NM_008533	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91932123-2	chr2	91931623	91932623	+	921.875	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291482)	promoter-TSS (NM_001291482)	174.0	NM_001291483	17242.0	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-85458562-4	chr9	85458035	85459035	+	921.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-131385.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0.0	0.0	2.0	0.0	0.0	1.5
Merged-chr6-34059965-4	chr6	34059444	34060444	+	921.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028886, intron 6 of 19)	intron (NM_028886, intron 6 of 19)	30496.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87769097-4	chr3	87768589	87769589	+	921.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289601)	promoter-TSS (NM_001289601)	-136.0	NM_152799	73182.0	Mm.158962	NM_028460	ENSMUSG00000028073	Pear1	3110045G13Rik|Jedi-1|Megf12	platelet endothelial aggregation receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118730648-4	chr2	118730143	118731143	+	921.8583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2205.0	NM_001290790	18796.0	Mm.215156	NM_177568	ENSMUSG00000040061	Plcb2	AI550384|B230205M18Rik|B230399N12	phospholipase C, beta 2	protein-coding	3.0	4.0	5.0	1.5	0.0	0.0
Merged-chr5-67607896-4	chr5	67607357	67608357	+	921.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033415)	promoter-TSS (NM_001033415)	-26.0	NM_001033415	330096.0	Mm.442747	NM_001033415	ENSMUSG00000050010	Shisa3	D830007B15Rik	shisa family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9380932-4	chr13	9380441	9381441	+	921.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	104416.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-8255582-3	chr14	8255082	8256082	+	921.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053115, intron 4 of 14)	MER91B|DNA|hAT-Tip100	3257.0	NM_001161667	93732.0	Mm.28700	NM_053115	ENSMUSG00000021751	Acox2	THCCox	acyl-Coenzyme A oxidase 2, branched chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-195040632-4	chr1	195040138	195041138	+	921.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_132621)	TTS (NR_132621)	3091.0	NR_029745	387224.0		NR_029745	ENSMUSG00000065548	Mir29c	Mirn29c|mir-29c|mmu-mir-29c	microRNA 29c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-86852366-3	chr8	86851892	86852892	+	921.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 3 of 6)	intron (NM_030563, intron 3 of 6)	32866.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6030562-4	chr15	6030061	6031061	+	921.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155428, intron 2 of 2)	Lx8b|LINE|L1	14143.0	NR_155428	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34771828-4	chr11	34771339	34772339	+	921.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 1 of 51)	intron (NM_033374, intron 1 of 51)	12066.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83853250-3	chr7	83852753	83853753	+	921.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31088.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr18-62044329-4	chr18	62043860	62044860	+	921.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	91285.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	22.0	50.5	37.5	53.0	86.5	47.5
Merged-chr14-47299044-4	chr14	47298538	47299538	+	921.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178684, intron 1 of 3)	intron (NM_178684, intron 1 of 3)	764.0	NM_001360542	218975.0	Mm.212297	NM_178684	ENSMUSG00000021840	Mapk1ip1l	9130202B12|C130032J12Rik	mitogen-activated protein kinase 1 interacting protein 1-like	protein-coding	2.5	0.0	7.0	6.5	2.5	14.0
Merged-chr8-112927037-4	chr8	112926535	112927535	+	921.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140227.0	NR_033584	791378.0	Mm.350576	NR_033584	ENSMUSG00000110541	Gm10280	-	predicted gene 10280	ncRNA	0.0	8.0	0.0	0.0	0.5	1.0
Merged-chr1-131379186-4	chr1	131378714	131379714	+	921.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 4 of 22)	(A)n|Simple_repeat|Simple_repeat	-99651.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60808520-8	chr18	60807961	60808961	+	921.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042605, intron 3 of 8)	intron (NM_001042605, intron 3 of 8)	-3615.0	NR_039567	100628611.0		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	17.0	70.5	25.0	33.5	48.5	29.0
Merged-chr11-96005852-2	chr11	96005352	96006352	+	921.7999880000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009951)	promoter-TSS (NM_009951)	92.0	NM_009951	140486.0	Mm.294769	NM_009951	ENSMUSG00000013415	Igf2bp1	AL024068|AW549074|CRD-BP|Crdbp|D030026A21Rik|D11Moh40e|D11Moh45|IMP-1|IMP1|Neilsen|ZBP-1|Zbp1|mir-3063	insulin-like growth factor 2 mRNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115470024-4	chr6	115469516	115470516	+	921.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 6 of 7)	intron (NM_001308354, intron 6 of 7)	47950.0	NM_011146	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110886003-4	chr12	110885554	110886554	+	921.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026048, intron 1 of 4)	intron (NM_026048, intron 1 of 4)	3091.0	NM_027223	67236.0	Mm.287157	NM_026048	ENSMUSG00000021276	Cinp	1810047K05Rik|2810452K22Rik	cyclin-dependent kinase 2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98165192-2	chr7	98164692	98165692	+	921.7999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_007602, intron 1 of 12)	intron (NM_007602, intron 1 of 12)	-2850.0	NM_001301250	12337.0	Mm.326847	NM_007602	ENSMUSG00000035547	Capn5	nCL-3	calpain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117874158-4	chr10	117873673	117874673	+	921.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-28199.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83616669-4	chr6	83616179	83617179	+	921.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	39437.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	3.5	25.5	14.5	3.5	13.0	7.0
Merged-chr10-94333518-4	chr10	94333015	94334015	+	921.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	21566.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	3.5	0.0	4.5	4.5	7.5	2.0
Merged-chr2-33131916-4	chr2	33131457	33132457	+	921.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355201)	promoter-TSS (NM_001355201)	-521.0	NM_001355201	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-157019875-4	chr1	157019502	157020502	+	921.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80376.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	45.0	103.0	78.0	77.0	138.5	121.5
Merged-chr16-90712502-4	chr16	90711968	90712968	+	921.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14903.0	NM_025642	66578.0	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88727924-3	chr5	88727426	88728426	+	921.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026735, intron 1 of 5)	L1MC4|LINE|L1	7055.0	NM_026735	68473.0	Mm.35764	NM_026735	ENSMUSG00000006262	Mob1b	1110003E08Rik|AU015450|B230364F10|Mobkl1a	MOB kinase activator 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100204090-3	chr12	100203569	100204569	+	921.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313934, intron 3 of 5)	intron (NM_001313934, intron 3 of 5)	3925.0	NM_001313934	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130501825-3	chr2	130501306	130502306	+	921.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355161, intron 1 of 21)	intron (NM_001355161, intron 1 of 21)	51528.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	37.5	130.5	60.5	40.0	58.5	48.0
Merged-chr13-55622189-3	chr13	55621665	55622665	+	921.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007596)	promoter-TSS (NM_007596)	-840.0	NM_007596	12328.0	Mm.2313	NM_007596	ENSMUSG00000021501	Caml	AI385748|Camlg	calcium modulating ligand	protein-coding	7.5	12.5	17.0	3.5	33.5	10.5
Merged-chr8-31097198-4	chr8	31096702	31097702	+	921.758301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357223)	TTS (NM_001357223)	5552.0	NM_001357223	66959.0	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding	0.0	2.0	0.0	4.5	0.0	2.0
Merged-chr8-120634566-4	chr8	120634022	120635022	+	921.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197988)	promoter-TSS (NM_197988)	-140.0	NM_197988	68918.0	Mm.473736	NM_197988	ENSMUSG00000043687	1190005I06Rik	-	RIKEN cDNA 1190005I06 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98089967-4	chr15	98089475	98090475	+	921.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144851, intron 1 of 17)	B2_Mm2|SINE|B2	-2614.0	NM_001163488	18642.0	Mm.272582	NM_021514	ENSMUSG00000033065	Pfkm	AI131669|ATP-PFK|PFK-A|PFK-M|Pfk-4|Pfk4|Pfka|Pfkx	phosphofructokinase, muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137331101-4	chr5	137330587	137331587	+	921.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359611, intron 4 of 14)	intron (NM_001359611, intron 4 of 14)	2495.0	NM_031406	83704.0	Mm.235625	NM_031406	ENSMUSG00000037344	Slc12a9	CIP1	solute carrier family 12 (potassium/chloride transporters), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59042846-4	chr2	59042354	59043354	+	921.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 1 of 13)	intron (NM_001362394, intron 1 of 13)	117829.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115974794-2	chr11	115974294	115975294	+	921.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133663)	promoter-TSS (NM_133663)	69.0	NM_133663	192897.0	Mm.213873	NM_133663	ENSMUSG00000020758	Itgb4	AA407042|C230078O20|CD104	integrin beta 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91484261-3	chr16	91483719	91484719	+	921.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010508)	promoter-TSS (NM_010508)	-996.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75369869-6	chr18	75369320	75370320	+	921.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042660, intron 1 of 3)	intron (NM_001042660, intron 1 of 3)	2455.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122436812-4	chr8	122436392	122437392	+	921.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028354, intron 8 of 10)	intron (NR_028354, intron 8 of 10)	-3952.0	NM_007806	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19665484-4	chr7	19664997	19665997	+	921.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019649)	promoter-TSS (NM_019649)	-467.0	NM_019649	56457.0	Mm.290960	NM_019649	ENSMUSG00000002981	Clptm1	HS9|N14	cleft lip and palate associated transmembrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150117509-3	chr4	150117015	150118015	+	921.744446	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1829.0	NM_019741	56485.0	Mm.260220	NM_019741	ENSMUSG00000028976	Slc2a5	AI526984|Glut5|Slc5a	solute carrier family 2 (facilitated glucose transporter), member 5	protein-coding	26.0	26.5	34.0	0.0	0.5	3.5
Merged-chr10-20855193-3	chr10	20854649	20855649	+	921.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97398.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30787690-4	chr16	30787186	30788186	+	921.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	187963.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	35.5	55.5	47.0	37.0	19.5	31.5
Merged-chr7-132237770-3	chr7	132237266	132238266	+	921.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001360768, exon 8 of 8)	3' UTR (NM_001360768, exon 8 of 8)	-77898.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142068758-3	chr7	142068267	142069267	+	921.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7733.0	NM_028308	101513.0	Mm.53259	NM_028308	ENSMUSG00000025147	Mob2	1110017M21Rik|2700078K21Rik|AI256456|Mmh	MOB kinase activator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-121135147-3	chr6	121134624	121135624	+	921.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4102.0	NM_001270475	194401.0	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	3.5	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39519657-7	chr18	39518985	39519985	+	921.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32240.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95973591-4	chr13	95973105	95974105	+	921.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029210, intron 12 of 12)	intron (NM_029210, intron 12 of 12)	-81683.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	4.0	18.0	6.0	0.0	9.0	0.0
Merged-chr8-125240753-4	chr8	125240311	125241311	+	921.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 11 of 12)	B3A|SINE|B2	186616.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	0.0	1.5	7.0	2.5	0.0	0.0
Merged-chr13-37678148-4	chr13	37677651	37678651	+	921.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147887.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53862885-4	chr18	53862384	53863384	+	921.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152809, intron 1 of 12)	CpG	771.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	26.0	90.5	67.5	18.5	72.0	54.5
Merged-chr18-76160983-4	chr18	76160492	76161492	+	921.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9560.0	NR_105776	102465184.0		NR_105776	ENSMUSG00000098276	Mir6358	Gm27830|mmu-mir-6358	microRNA 6358	ncRNA	3.0	0.0	2.5	2.0	0.0	3.0
Merged-chr1-91366401-4	chr1	91365934	91366934	+	921.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173395)	promoter-TSS (NM_173395)	4.0	NM_173395	227358.0	Mm.389157	NM_173395	ENSMUSG00000047443	Erfe	4832406C22|Fam132b|myonectin	erythroferrone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53769043-4	chr11	53768608	53769608	+	921.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008390)	promoter-TSS (NM_008390)	-906.0	NM_001159393	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87873219-4	chr1	87872730	87873730	+	921.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177646, intron 1 of 29)	intron (NM_177646, intron 1 of 29)	-18931.0	NR_136921	100503175.0	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59806308-1	chr4	59805808	59806808	+	921.6666869999999	f0_balb.idr	intron (NM_172468, intron 1 of 8)	CpG	658.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-53582024-3	chr17	53581525	53582525	+	921.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151733, intron 1 of 16)	intron (NR_151733, intron 1 of 16)	-2101.0	NM_001190846	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4094563-4	chr11	4094061	4095061	+	921.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026443, intron 1 of 3)	intron (NM_026443, intron 1 of 3)	870.0	NM_026443	67900.0	Mm.41719	NM_026443	ENSMUSG00000004748	Mtfp1	1700020C11Rik|2610507A21Rik|AV005788|Mtp18	mitochondrial fission process 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-33907060-3	chr1	33906539	33907539	+	921.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 1 of 6)	CpG	582.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-28261015-4	chr6	28260531	28261531	+	921.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081678, intron 1 of 5)	CpG	570.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119830847-6	chr8	119830363	119831363	+	921.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	9716.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16519877-4	chr1	16519352	16520352	+	921.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025303)	promoter-TSS (NM_025303)	-550.0	NM_001347045	29819.0	Mm.216257	NM_025303	ENSMUSG00000025920	Stau2	-	staufen double-stranded RNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-48874669-4	chr11	48874184	48875184	+	921.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3264.0	NM_008326	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10722798-3	chr17	10722307	10723307	+	921.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	117384.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0.0	1.5	2.5	0.0	1.5	2.5
Merged-chr4-156199741-2	chr4	156199241	156200241	+	921.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_015783, exon 2 of 2)	exon (NM_015783, exon 2 of 2)	1077.0	NM_015783	100038882.0	Mm.4950	NM_015783	ENSMUSG00000035692	Isg15	G1p2|IGI15|IP17|Irfp|UCRP	ISG15 ubiquitin-like modifier	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96461941-2	chr15	96461441	96462441	+	921.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1098.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-13355619-2	chr14	13355119	13356119	+	921.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028052, intron 2 of 5)	intron (NM_028052, intron 2 of 5)	70839.0	NM_028052	72003.0	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43042062-2	chr4	43041562	43042562	+	921.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_045567, intron 1 of 7)	PB1D10|SINE|Alu	-1761.0	NM_001253354	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	9.0	7.5	11.0	17.0	25.5	12.0
Merged-chr5-30867096-3	chr5	30866599	30867599	+	921.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310516)	TTS (NM_001310516)	-2480.0	NM_144525	68796.0	Mm.205169	NM_144525	ENSMUSG00000038828	Tmem214	1110039B18Rik|4921530J21Rik|AI841294|AU018742|C76280	transmembrane protein 214	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44993549-4	chr16	44993051	44994051	+	921.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49873.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-51094881-4	chr2	51094382	51095382	+	921.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTTG)n|Simple_repeat|Simple_repeat	54229.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-144246657-4	chr1	144246176	144247176	+	921.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015811, intron 3 of 4)	intron (NM_015811, intron 3 of 4)	2428.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21295849-4	chr5	21295341	21296341	+	921.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 17 of 18)	intron (NM_029195, intron 17 of 18)	-76832.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67177959-4	chr15	67177482	67178482	+	921.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1100.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	10.0	24.0	12.0	21.5	29.0	19.0
Merged-chr7-110221269-3	chr7	110220779	110221779	+	921.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009302)	promoter-TSS (NM_009302)	-424.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32624000-3	chr9	32623481	32624481	+	921.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72061.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-22015868-4	chr13	22015356	22016356	+	921.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Val-GTY|tRNA|tRNA	-6115.0	NM_019429	54373.0	Mm.32043	NM_019429	ENSMUSG00000006179	Prss16	AI448615|TSSP	protease, serine 16 (thymus)	protein-coding	0.0	0.0	3.0	0.0	0.0	0.0
Merged-chr7-13302989-4	chr7	13302504	13303504	+	921.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083188, intron 19 of 28)	intron (NM_001083188, intron 19 of 28)	-22663.0	NM_001168504	232889.0	Mm.223639	NM_001004762	ENSMUSG00000033847	Pla2g4c	D7Ertd445e	phospholipase A2, group IVC (cytosolic, calcium-independent)	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr14-31376114-4	chr14	31375624	31376624	+	921.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 6 of 7)	intron (NM_001347585, intron 6 of 7)	39486.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125365814-2	chr6	125365272	125366272	+	921.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_198604, intron 14 of 16)	intron (NM_198604, intron 14 of 16)	14732.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	6.5	1.5	12.5	0.0	18.5	13.0
Merged-chr11-19024643-3	chr11	19024163	19025163	+	921.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5694.0	NM_010789	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	1.0	2.0	1.0	0.0	0.0	0.0
Merged-chr2-114260600-4	chr2	114260110	114261110	+	921.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59178.0	NM_175466	228491.0	Mm.132523	NM_175466	ENSMUSG00000040321	Zfp770	6430601A21Rik|Znf770	zinc finger protein 770	protein-coding	0.0	2.5	1.5	1.5	0.5	1.0
Merged-chr10-100137561-4	chr10	100137056	100138056	+	921.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORSL|DNA|hAT-Tip100	121735.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155683890-4	chr4	155683388	155684388	+	921.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10454.0	NM_178699	230991.0	Mm.29083	NM_178699	ENSMUSG00000074738	Fndc10	B930041F14Rik|MNCb-3966	fibronectin type III domain containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141170063-4	chr7	141169565	141170565	+	921.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172100, intron 1 of 9)	RMER5|LTR|ERV1	-1129.0	NM_145135	107702.0	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114083918-3	chr7	114083430	114084430	+	921.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	33851.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	2.0	11.5	2.5	4.5	11.5	3.5
Merged-chr8-35591929-3	chr8	35591388	35592388	+	921.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-2868.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-33010217-3	chr12	33009702	33010702	+	921.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56016.0	NM_198710	19027.0	Mm.246304	NM_013635	ENSMUSG00000020570	Sypl	AI314763|AI604763|D12Ertd446e|PanI|Pphn|Sypl1	synaptophysin-like protein	protein-coding	3.0	3.0	1.0	0.0	6.5	0.0
Merged-chr6-5509335-3	chr6	5508798	5509798	+	921.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-13020.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36967021-4	chr17	36966500	36967500	+	921.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8408.0	NM_029602	76416.0	Mm.26684	NM_029602	ENSMUSG00000036214	Znrd1as	1700022C21Rik|AI746295|Znrd1-as	zinc ribbon domain containing 1, antisense	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102369427-10	chr12	102368851	102369851	+	921.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001161365, exon 6 of 10)	exon (NM_001161365, exon 6 of 10)	70462.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133615687-3	chr4	133615180	133616180	+	921.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017968, intron 2 of 7)	intron (NM_001017968, intron 2 of 7)	-13512.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	0.0	20.5	28.5	65.0	120.5	243.0
Merged-chr11-94118827-3	chr11	94118353	94119353	+	921.511108	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025428, intron 26 of 26)	intron (NM_001025428, intron 26 of 26)	74648.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30336588-4	chr7	30336097	30337097	+	921.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14222.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	0.0	16.5	2.0	0.0	5.5	0.5
Merged-chr6-38874589-2	chr6	38874089	38875089	+	921.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 1 of 14)	intron (NM_010433, intron 1 of 14)	1601.0	NM_010433	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-56808830-4	chr6	56808325	56809325	+	921.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11012.0	NM_001362213	210973.0	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128739131-2	chr7	128738631	128739631	+	921.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145955, intron 1 of 15)	intron (NM_145955, intron 1 of 15)	1298.0	NM_145955	210711.0	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86683059-2	chr11	86682559	86683559	+	921.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175004)	promoter-TSS (NM_175004)	-924.0	NM_175004	217057.0	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95932481-2	chr3	95931981	95932981	+	921.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253758, intron 1 of 4)	intron (NM_001253758, intron 1 of 4)	3224.0	NM_023210	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77491671-2	chr11	77491171	77492171	+	921.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1741.0	NM_001004144	216963.0	Mm.290182	NM_001004144	ENSMUSG00000011877	Git1	Cat-1|p95Cat	G protein-coupled receptor kinase-interactor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107760058-2	chr13	107759558	107760558	+	921.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	72661.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-148960436-2	chr3	148959936	148960936	+	921.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5801.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	27.0	14.5	21.5	23.0	38.5	27.5
Merged-chr5-105507773-4	chr5	105507239	105508239	+	921.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-11732.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.0	0.5	0.5	11.5	16.5	25.0
Merged-chr15-36173517-2	chr15	36173017	36174017	+	921.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023127)	promoter-TSS (NM_023127)	-493.0	NM_023127	17749.0	Mm.27375	NM_023127	ENSMUSG00000045996	Polr2k	ABC10-alpha|MafY|Mt1a|RPABC4|RPB10alpha|RPB12|RPB7.0	polymerase (RNA) II (DNA directed) polypeptide K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46518189-2	chr18	46517689	46518689	+	921.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173423, intron 2 of 2)	intron (NM_173423, intron 2 of 2)	7782.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26164681-2	chr2	26164181	26165181	+	921.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24175.0	NM_001256521	109299.0	Mm.389259	NM_001256521		Tmem250-ps	AI551216|C330006A16Rik	transmembrane protein 250, pseudogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-102022740-2	chr13	102022240	102023240	+	921.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-254523.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146773235-2	chr5	146772735	146773735	+	921.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	21721.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75706145-2	chr2	75705645	75706645	+	921.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1482.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	23.5	30.0	35.5	18.5	29.0	33.5
Merged-chr15-64092750-4	chr15	64092244	64093244	+	921.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 27 of 28)	intron (NM_001276461, intron 27 of 28)	-32296.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	22.0	26.0	35.5	16.5	47.0	29.5
Merged-chr17-84120729-2	chr17	84120229	84121229	+	921.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G1|LTR|ERVL-MaLR	42069.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58979462-2	chr11	58978960	58979960	+	921.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053168, intron 1 of 5)	intron (NM_053168, intron 1 of 5)	1367.0	NM_053168	94091.0	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	39.5	74.5	74.5	16.0	14.5	6.0
Merged-chr9-95856003-2	chr9	95855503	95856503	+	921.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271569, intron 1 of 1)	intron (NM_001271569, intron 1 of 1)	1514.0	NR_073361	73410.0	Mm.443314	NM_028533	ENSMUSG00000096655	1700065D16Rik	-	RIKEN cDNA 1700065D16 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-106679838-4	chr5	106679361	106680361	+	921.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026856, intron 1 of 6)	intron (NM_026856, intron 1 of 6)	16969.0	NM_026856	52397.0	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	2.0	8.0	11.0	2.0	6.0	8.0
Merged-chr9-25501228-2	chr9	25500728	25501728	+	921.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	19631.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-59227261-2	chr7	59226761	59227761	+	921.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1489.0	NM_001033962	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	2.0	20.5	7.0	2.0	19.0	7.0
Merged-chr5-114379836-2	chr5	114379336	114380336	+	921.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054093)	promoter-TSS (NM_054093)	669.0	NM_001159941	330171.0	Mm.238285	NM_026145	ENSMUSG00000001098	Kctd10	AW536343|C87062|mBACURD3	potassium channel tetramerisation domain containing 10	protein-coding	1.5	1.5	9.5	5.0	19.5	15.0
Merged-chr6-82740396-3	chr6	82739914	82740914	+	921.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 7 of 17)	intron (NM_013820, intron 7 of 17)	34040.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	39.0	28.5	30.0	8.5	7.5	11.5
Merged-chr17-46154523-4	chr17	46154020	46155020	+	921.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025649)	promoter-TSS (NM_025649)	-969.0	NM_025649	66591.0	Mm.272024	NM_025649	ENSMUSG00000034509	Mad2l1bp	0610009D16Rik|2510031P20Rik|AU018945|AW550977|C76045|CMT2A|CMT2B|Mad2lbp|mKIAA0110	MAD2L1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83785598-2	chr11	83785098	83786098	+	921.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31961.0	NM_145432	217026.0	Mm.117874	NM_145432	ENSMUSG00000000976	Heatr6	2700008B19Rik|BB135312|BB249351	HEAT repeat containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-64868134-2	chr18	64867647	64868647	+	921.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19609.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	3.5	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83060676-2	chr11	83060176	83061176	+	921.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4436.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95832089-6	chr11	95831644	95832644	+	921.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153104)	TTS (NM_153104)	7644.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90612368-4	chr2	90611862	90612862	+	921.462524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31715.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102011064-6	chr5	102010556	102011556	+	921.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	58865.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	24.0	13.0	6.0	23.5	12.0	5.5
Merged-chr2-159646125-4	chr2	159645629	159646629	+	921.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-301212.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54589563-4	chr13	54589037	54590037	+	921.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025933)	promoter-TSS (NM_025933)	537.0	NM_178605	28126.0	Mm.439993	NM_178605	ENSMUSG00000025869	Nop16	AA409471|D13Wsu177e	NOP16 nucleolar protein	protein-coding	11.5	10.0	18.5	13.0	10.5	4.5
Merged-chr18-55282485-3	chr18	55281970	55282970	+	921.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-289879.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.5	1.0	6.5	4.5	0.0	0.0
Merged-chr11-59633218-3	chr11	59632732	59633732	+	921.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	20266.0	NM_001011740	257886.0	Mm.457883	NM_001011740	ENSMUSG00000044061	Olfr225	MOR256-51	olfactory receptor 225	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49896376-4	chr16	49895876	49896876	+	921.4249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010581, exon 7 of 10)	exon (NM_010581, exon 7 of 10)	40722.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53118927-4	chr4	53118413	53119413	+	921.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	40982.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	8.5	38.0	10.5	3.0	11.0	21.5
Merged-chr3-88424664-4	chr3	88424170	88425170	+	921.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281795, intron 1 of 3)	intron (NM_001281795, intron 1 of 3)	471.0	NM_178696	229517.0	Mm.301740	NM_178696	ENSMUSG00000050144	Slc25a44	6720482A19|B430110G05Rik	solute carrier family 25, member 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19306830-10	chr7	19306303	19307303	+	921.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347586, intron 2 of 4)	intron (NM_001347586, intron 2 of 4)	3242.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99112302-4	chr9	99111790	99112790	+	921.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 2 of 23)	intron (NM_029094, intron 2 of 23)	27921.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-22722010-4	chr2	22721508	22722508	+	921.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52319.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130629512-4	chr4	130629019	130630019	+	921.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33802.0	NM_030722	80912.0	Mm.440206	NM_030722	ENSMUSG00000028580	Pum1	AA517475|Pumm|mKIAA0099	pumilio RNA-binding family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138620215-4	chr1	138619724	138620724	+	921.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311148)	promoter-TSS (NM_001311148)	-467.0	NM_001311148	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13526435-5	chr9	13525863	13526863	+	921.3666380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93626.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	5.0	25.0	16.5	9.5	12.5	18.0
Merged-chr19-4228484-4	chr19	4228010	4229010	+	921.3624880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132308, intron 2 of 3)	intron (NR_132308, intron 2 of 3)	-3383.0	NM_027196	69745.0	Mm.32518	NM_027196	ENSMUSG00000024854	Pold4	2410012M21Rik|AI463381|AW060307|Polds|p12	polymerase (DNA-directed), delta 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109367438-2	chr11	109366949	109367949	+	921.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010303, intron 2 of 3)	intron (NM_010303, intron 2 of 3)	-3795.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	34.0	78.0	51.5	42.5	68.0	44.5
Merged-chr5-135466859-2	chr5	135466359	135467359	+	921.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	B3|SINE|B2	-72313.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121363169-2	chr10	121362669	121363669	+	921.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	-1921.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	3.0	0.0	0.0	3.0	0.0	0.0
Merged-chr3-88192404-2	chr3	88191904	88192904	+	921.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14619.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143041695-4	chr7	143041210	143042210	+	921.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110355, intron 2 of 4)	intron (NR_110355, intron 2 of 4)	-11040.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	5.5	8.0	17.0	14.5	20.5	24.0
Merged-chr18-83932674-3	chr18	83932160	83933160	+	921.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153902.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98776500-3	chr15	98776015	98777015	+	921.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011718, intron 3 of 4)	CpG	1635.0	NM_011718	22410.0	Mm.4709	NM_011718	ENSMUSG00000022996	Wnt10b	Wnt12	wingless-type MMTV integration site family, member 10B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4083573-3	chr11	4083082	4084082	+	921.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11849.0	NM_026443	67900.0	Mm.41719	NM_026443	ENSMUSG00000004748	Mtfp1	1700020C11Rik|2610507A21Rik|AV005788|Mtp18	mitochondrial fission process 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-138827950-3	chr7	138827438	138828438	+	921.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	18329.0	NM_001045483	69546.0	Mm.31598	NM_027115	ENSMUSG00000041775	Mapk1ip1	2310009E07Rik|AU043776|MISS	mitogen-activated protein kinase 1 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94149856-3	chr11	94149349	94150349	+	921.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H1|LTR|ERVL-MaLR	-61605.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-121408554-7	chr2	121408145	121409145	+	921.328247	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153075, intron 4 of 12)	Lx5c|LINE|L1	5147.0	NM_153075	212670.0	Mm.384318	NM_153075	ENSMUSG00000033486	Catsper2	-	cation channel, sperm associated 2	protein-coding	3.5	18.5	13.0	7.5	11.0	12.5
Merged-chr8-120760060-4	chr8	120759571	120760571	+	921.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21432.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41310769-4	chr4	41310281	41311281	+	921.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026893, intron 2 of 8)	RSINE1|SINE|B4	4120.0	NM_026893	68970.0	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90259183-4	chr16	90258680	90259680	+	921.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346799, intron 4 of 19)	intron (NM_001346799, intron 4 of 19)	25306.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67133799-4	chr17	67133297	67134297	+	921.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 2 of 32)	intron (NM_001357625, intron 2 of 32)	-107562.0	NR_049205	100885844.0		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86538147-3	chr4	86537662	86538662	+	921.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081096, intron 1 of 3)	B2_Mm2|SINE|B2	20141.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-6501448-3	chr18	6500974	6501974	+	921.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007935, intron 1 of 13)	B3|SINE|B2	-10617.0	NM_001276350	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	2.5	0.0	1.0	0.5	3.5	2.5
Merged-chr19-58980009-4	chr19	58979506	58980506	+	921.271423	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175172, intron 14 of 14)	intron (NM_175172, intron 14 of 14)	-36334.0	NM_001327998	73442.0	Mm.39739	NM_175199	ENSMUSG00000025092	Hspa12a	1700063D12Rik|AI118035|AI840429|AW048913|AW556406|D5Mgi40|Gm19925|mKIAA0417	heat shock protein 12A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70764773-5	chr8	70764261	70765261	+	921.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023065, exon 4 of 8)	exon (NM_023065, exon 4 of 8)	1902.0	NM_023065	65972.0	Mm.30241	NM_023065		Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	16.5	47.0	33.0	10.0	39.5	36.0
Merged-chr19-32386755-3	chr19	32386312	32387312	+	921.265869	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 1 of 9)	intron (NM_144792, intron 1 of 9)	1237.0	NM_001362423	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	1.5	0.0	1.0	1.0	0.0	0.5
Merged-chr1-55363560-6	chr1	55363100	55364100	+	921.257935	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029267)	promoter-TSS (NM_029267)	-131.0	NM_029267	75388.0	Mm.483408	NM_029267	ENSMUSG00000025977	Boll	4930554P13Rik|4930597B14Rik	boule homolog, RNA binding protein	protein-coding	2.5	0.0	9.0	0.0	3.5	0.0
Merged-chr3-90251066-4	chr3	90250500	90251500	+	921.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013901, intron 3 of 3)	B1F|SINE|Alu	2808.0	NM_013901	30791.0	Mm.294709	NM_013901	ENSMUSG00000052310	Slc39a1	Zip1|Zirtl	solute carrier family 39 (zinc transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-8644993-4	chr13	8644497	8645497	+	921.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110345, intron 3 of 10)	MIRb|SINE|MIR	226047.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34518109-4	chr5	34517607	34518607	+	921.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4128.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137746540-4	chr5	137746093	137747093	+	921.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023910, intron 1 of 4)	intron (NM_023910, intron 1 of 4)	624.0	NM_029805	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132315625-4	chr7	132315127	132316127	+	921.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028578)	promoter-TSS (NR_028578)	-37.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-12160966-4	chr5	12160444	12161444	+	921.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-222222.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124047188-4	chr5	124046704	124047704	+	921.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-14944.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	1.0	29.5	12.5	0.0	8.0	2.0
Merged-chr2-132575935-2	chr2	132575435	132576435	+	921.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355651, intron 1 of 19)	intron (NM_001355651, intron 1 of 19)	2313.0	NM_001291050	74182.0	Mm.211211	NM_027096	ENSMUSG00000027346	Gpcpd1	2310004G06Rik|2310032D16Rik|AU015213|Gde5|Prei4|mKIAA1434	glycerophosphocholine phosphodiesterase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74159703-4	chr17	74159216	74160216	+	921.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111800.0	NM_053188	94224.0	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27780770-2	chr15	27780270	27781270	+	921.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 34 of 56)	intron (NM_001081302, intron 34 of 56)	-99228.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99297952-3	chr12	99297449	99298449	+	921.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 3 of 5)	MLT1A|LTR|ERVL-MaLR	-135141.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-51044059-3	chr17	51043556	51044556	+	921.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 2 of 21)	intron (NM_028162, intron 2 of 21)	115322.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11705892-4	chr16	11705384	11706384	+	921.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 18 of 20)	intron (NM_028964, intron 18 of 20)	-73818.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5751922-4	chr19	5751412	5752412	+	921.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008520, intron 16 of 27)	intron (NM_008520, intron 16 of 27)	11008.0	NM_008520	16998.0	Mm.182396	NM_008520	ENSMUSG00000024940	Ltbp3	Ltbp2|mFLJ00070	latent transforming growth factor beta binding protein 3	protein-coding	0.0	3.0	0.0	0.0	1.0	0.0
Merged-chr3-79075230-4	chr3	79074713	79075713	+	921.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099624, intron 19 of 23)	intron (NM_001099624, intron 19 of 23)	69674.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	13.0	53.0	30.5	13.0	52.5	34.5
Merged-chr15-78582042-4	chr15	78581533	78582533	+	921.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155437)	promoter-TSS (NR_155437)	-444.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6260659-2	chr19	6260159	6261159	+	921.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_194348, intron 38 of 39)	intron (NM_194348, intron 38 of 39)	-3984.0	NR_029830	723957.0		NR_029830	ENSMUSG00000065582	Mir194-2	Mirn194-2|mir-194-2	microRNA 194-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-5244671-4	chr16	5244160	5245160	+	921.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027446, exon 8 of 8)	3' UTR (NM_027446, exon 8 of 8)	11039.0	NM_145362	208211.0	Mm.34581	NM_145362	ENSMUSG00000039427	Alg1	HMAT1|HMT1	asparagine-linked glycosylation 1 (beta-1,4-mannosyltransferase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114117100-4	chr7	114116599	114117599	+	921.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025846, intron 1 of 5)	CpG	682.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	3.5	3.5	5.5	5.0	12.0	5.5
Merged-chr18-61120111-4	chr18	61119615	61120615	+	921.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 11 of 21)	intron (NM_001037859, intron 11 of 21)	2647.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	1.5	32.5	15.0	5.5	15.5	8.0
Merged-chr13-81371278-4	chr13	81370762	81371762	+	921.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 83 of 89)	Lx6|LINE|L1	261882.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149120140-3	chr4	149119628	149120628	+	921.1333619999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_104263, exon 4 of 4)	non-coding (NR_104263, exon 4 of 4)	6635.0	NM_007745	12854.0	Mm.6204	NM_007745	ENSMUSG00000028971	Cort	CST|PCST	cortistatin	protein-coding	6.0	0.5	8.5	6.0	5.5	4.5
Merged-chr9-7344319-4	chr9	7343820	7344820	+	921.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001320077)	promoter-TSS (NM_001320077)	-77.0	NM_001320077	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-52423194-3	chr10	52422642	52423642	+	921.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030250, intron 1 of 4)	intron (NM_030250, intron 1 of 4)	5595.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6711266-4	chr2	6710764	6711764	+	921.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	L2|LINE|L2	10398.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90133471-4	chr7	90132976	90133976	+	921.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	3263.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	147.5	364.0	224.5	140.5	440.0	222.5
Merged-chr10-67966357-4	chr10	67965850	67966850	+	921.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152797, intron 2 of 2)	intron (NR_152797, intron 2 of 2)	7358.0	NR_152797	75067.0	Mm.416933	NR_152797	ENSMUSG00000112899	4930521O17Rik	-	RIKEN cDNA 4930521O17 gene	ncRNA	19.0	10.5	30.5	4.0	16.0	4.5
Merged-chr6-89050770-4	chr6	89050264	89051264	+	921.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-45346.0	NR_134978	232217.0	Mm.281744	NM_175017	ENSMUSG00000055403	4933427D06Rik	-	RIKEN cDNA 4933427D06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-90492279-4	chr11	90491785	90492785	+	921.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011505, intron 17 of 17)	intron (NM_011505, intron 17 of 17)	-101368.0	NM_172563	217082.0	Mm.158903	NM_172563	ENSMUSG00000003949	Hlf	E230015K02Rik	hepatic leukemia factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73606072-4	chr12	73605582	73606582	+	921.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	MTD|LTR|ERVL-MaLR	21286.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38709366-3	chr16	38708889	38709889	+	921.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	3646.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101296827-4	chr7	101296357	101297357	+	921.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001111111, exon 5 of 18)	exon (NM_001111111, exon 5 of 18)	5231.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47194844-4	chr17	47194369	47195369	+	921.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 3 of 19)	CT-rich|Low_complexity|Low_complexity	-35361.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69127390-4	chr12	69126884	69127884	+	921.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31802.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	0.0	4.0	4.5	0.0	2.0	3.5
Merged-chr4-63683273-4	chr4	63682777	63683777	+	921.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48856.0	NR_151544	102632940.0	Mm.399154	NR_151544	ENSMUSG00000086817	Gm11482	-	predicted gene 11482	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99130227-4	chr7	99129732	99130732	+	921.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 1 of 14)	intron (NM_178635, intron 1 of 14)	10912.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	6.5	16.5	7.0	1.0	17.5	9.0
Merged-chr7-97788615-8	chr7	97788113	97789113	+	921.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357364)	promoter-TSS (NM_001357364)	72.0	NM_001357364	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	2.0	28.0	14.0	7.5	24.5	14.5
Merged-chr10-59296464-4	chr10	59295935	59296935	+	921.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26861.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111081786-2	chr9	111081286	111082286	+	921.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-24268.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71247530-1	chr17	71247030	71248030	+	921.0	f1_c57bl6.idr	3' UTR (NM_001164885, exon 20 of 20)	3' UTR (NM_001164885, exon 20 of 20)	42876.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	3.0	2.5	0.0	2.0	5.5	6.0
Merged-chr2-60948015-3	chr2	60947512	60948512	+	921.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	15192.0	NM_020296	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-89353355-1	chr4	89352855	89353855	+	921.0	f0_balb.idr	intron (NR_132431, intron 2 of 9)	intron (NR_132431, intron 2 of 9)	-42323.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	1.5	5.5	2.0	8.5	0.0	2.0
Merged-chr16-77099297-2	chr16	77098797	77099797	+	921.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 18 of 23)	intron (NM_013918, intron 18 of 23)	85228.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25039952-2	chr8	25039452	25040452	+	921.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081187)	promoter-TSS (NM_001081187)	-990.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	12.5	25.5	4.5	11.0	18.5	10.0
Merged-chr2-28397916-2	chr2	28397416	28398416	+	921.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-50025.0	NM_001005420	241289.0	Mm.330095	NM_001005420	ENSMUSG00000035829	Ppp1r26	Gm347|Kiaa0649|mKIAA0649	protein phosphatase 1, regulatory subunit 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-63901524-2	chr7	63901024	63902024	+	921.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-15333.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr12-111714445-1	chr12	111713945	111714945	+	921.0	f1_balb.idr	intron (NM_001163388, intron 1 of 5)	intron (NM_001163388, intron 1 of 5)	1176.0	NM_026511	68020.0	Mm.425762	NM_026511	ENSMUSG00000037787	Apopt1	1700081D05Rik|2810002N01Rik|Apop-1|Apop1	apoptogenic, mitochondrial 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191270776-2	chr1	191270276	191271276	+	921.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	46322.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57701319-2	chr6	57700819	57701819	+	921.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-1136.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34141557-2	chr17	34141057	34142057	+	921.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3859.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	4.0	7.0	11.0	10.0	5.0	2.5
Merged-chr16-92826898-3	chr16	92826407	92827407	+	921.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111021)	promoter-TSS (NM_001111021)	-833.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-106711631-4	chr7	106711124	106712124	+	921.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB7_1-LTR_MM|LTR|ERVK	4721.0	NM_146598	258591.0	Mm.223117	NM_146598	ENSMUSG00000108948	Olfr695	MOR283-6	olfactory receptor 695	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67329044-2	chr17	67328544	67329544	+	921.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	25415.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158138859-2	chr2	158138359	158139359	+	921.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009373, exon 3 of 13)	exon (NM_009373, exon 3 of 13)	7533.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132800808-2	chr7	132800308	132801308	+	921.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	12388.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-137854693-3	chr2	137854169	137855169	+	921.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-401915.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78362152-2	chr17	78361652	78362652	+	921.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 13 of 16)	intron (NM_015800, intron 13 of 16)	56000.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-19627464-7	chr2	19627006	19628006	+	921.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30391.0	NR_033642	100041244.0	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55969324-3	chr16	55968822	55969822	+	921.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024218, intron 3 of 5)	B1_Mm|SINE|Alu	3047.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106247302-1	chr9	106246802	106247802	+	921.0	f1_balb.idr	5' UTR (NM_001291835, exon 1 of 11)	5' UTR (NM_001291835, exon 1 of 11)	428.0	NM_001291835	11655.0	Mm.290578	NM_020559	ENSMUSG00000032786	Alas1	ALAS|ALAS-N|Alas-1|Alas-h	aminolevulinic acid synthase 1	protein-coding	12.5	18.0	3.5	6.5	9.5	30.0
Merged-chr2-32547831-1	chr2	32547331	32548331	+	921.0	f0_balb.idr	intron (NM_153560, intron 1 of 10)	intron (NM_153560, intron 1 of 10)	12472.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32343684-3	chr12	32343195	32344195	+	921.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-35094.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-157140620-2	chr1	157140119	157141119	+	921.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177644, exon 18 of 18)	3' UTR (NM_177644, exon 18 of 18)	-31939.0	NM_001305063	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	0.0	9.5	10.5	5.0	11.0	12.5
Merged-chr15-86135507-4	chr15	86135047	86136047	+	921.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001205353, exon 19 of 19)	3' UTR (NM_001205353, exon 19 of 19)	-50181.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0.0	5.5	1.5	0.0	2.0	3.5
Merged-chr4-135301354-2	chr4	135300854	135301854	+	921.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28594.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-31818238-3	chr11	31817730	31818730	+	921.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_102310, exon 4 of 4)	non-coding (NR_102310, exon 4 of 4)	6317.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	8.0	8.0	3.5	1.5	18.5	18.5
Merged-chr6-89285912-2	chr6	89285412	89286412	+	921.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131021)	promoter-TSS (NR_131021)	-187.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72513815-2	chr6	72513315	72514315	+	921.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30576.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84660470-4	chr2	84659981	84660981	+	921.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145100, intron 2 of 4)	intron (NM_001145100, intron 2 of 4)	1402.0	NM_001145100	100270744.0	Mm.393636	NM_001145100	ENSMUSG00000086598	Btbd18	Btbd18-ps|Gm13718	BTB (POZ) domain containing 18	protein-coding	0.0	6.5	11.0	0.0	4.0	4.5
Merged-chr14-21502008-2	chr14	21501508	21502508	+	921.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_017479, intron 1 of 16)	intron (NM_017479, intron 1 of 16)	2223.0	NM_017479	54169.0	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	4.5	5.0	5.5	5.0	5.0	5.5
Merged-chr10-67643889-4	chr10	67643372	67644372	+	921.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71913.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-102656501-2	chr13	102656001	102657001	+	921.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37046.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0.0	2.0	1.5	0.0	0.0	0.0
Merged-chr1-64446245-4	chr1	64445752	64446752	+	920.9874880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86552.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46560297-4	chr4	46559742	46560742	+	920.9791869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 2 of 11)	intron (NM_001164804, intron 2 of 11)	6198.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	95.0	131.0	135.5	27.0	51.5	65.0
Merged-chr4-128638683-3	chr4	128638187	128639187	+	920.9722289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16015.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0.0	3.5	1.5	0.0	1.5	2.0
Merged-chr7-130812589-4	chr7	130812122	130813122	+	920.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081038, intron 10 of 15)	intron (NM_001081038, intron 10 of 15)	38553.0	NM_001081038	330660.0	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-60652765-4	chr1	60652299	60653299	+	920.9464109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86034.0	NM_001045513	77300.0	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	10.5	31.0	20.5	25.5	32.5	35.5
Merged-chr12-32767052-4	chr12	32766550	32767550	+	920.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53285.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	2.5	5.0	8.5	8.0	5.0	13.5
Merged-chr5-104005220-4	chr5	104004730	104005730	+	920.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053262, intron 4 of 6)	intron (NM_053262, intron 4 of 6)	16566.0	NM_053262	114664.0	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69208831-4	chr3	69208318	69209318	+	920.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-13601.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	1.5	0.0	3.5	0.5	4.0	0.0
Merged-chr17-87571101-2	chr17	87570639	87571639	+	920.93335	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64840.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0.0	5.0	0.0	1.0	1.5	0.5
Merged-chr13-17755166-4	chr13	17754666	17755666	+	920.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027118, intron 5 of 13)	ORR1E|LTR|ERVL-MaLR	7693.0	NR_035412	100316665.0		NR_035412	ENSMUSG00000080574	Mir466i	Mirn466i|mmu-mir-466i	microRNA 466i	ncRNA	2.5	15.0	8.5	2.5	9.5	10.5
Merged-chr8-94810190-4	chr8	94809681	94810681	+	920.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011332)	promoter-TSS (NM_011332)	-272.0	NM_011332	20295.0	Mm.41988	NM_011332	ENSMUSG00000031780	Ccl17	Abcd-2|Scya17|Scya17l|Tarc	chemokine (C-C motif) ligand 17	protein-coding	2.0	3.0	1.5	6.0	6.0	1.5
Merged-chr10-24468866-4	chr10	24468366	24469366	+	920.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126576.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	3.0	9.5	7.5	3.0	0.5	4.0
Merged-chr2-19388905-4	chr2	19388405	19389405	+	920.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029619, intron 3 of 4)	intron (NM_029619, intron 3 of 4)	17269.0	NM_029619	76467.0	Mm.27166	NM_029619	ENSMUSG00000023094	Msrb2	2310050L06Rik|Mrsb|Msrb|Pilb	methionine sulfoxide reductase B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101649694-3	chr7	101649224	101650224	+	920.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14044.0	NM_009191	20480.0	Mm.3990	NM_009191	ENSMUSG00000001829	Clpb	AL118244|Skd3	ClpB caseinolytic peptidase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182506746-3	chr1	182506253	182507253	+	920.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009794, intron 2 of 20)	intron (NM_009794, intron 2 of 20)	10857.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59768101-2	chr2	59767601	59768601	+	920.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290659, intron 4 of 25)	intron (NM_001290659, intron 4 of 25)	114505.0	NM_001159636	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120901847-4	chr7	120901346	120902346	+	920.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267710, intron 17 of 17)	ORR1E|LTR|ERVL-MaLR	-15898.0	NM_025298	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97421877-3	chr6	97421385	97422385	+	920.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 3 of 23)	intron (NM_145148, intron 3 of 23)	37401.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109546715-3	chr4	109546213	109547213	+	920.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15416.0	NM_026291	67646.0	Mm.45820	NM_026291	ENSMUSG00000060491	4930522H14Rik	1700007J23Rik	RIKEN cDNA 4930522H14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34124376-3	chr17	34123885	34124885	+	920.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010386, intron 1 of 5)	(T)n|Simple_repeat|Simple_repeat	-1133.0	NM_001360530	14998.0	Mm.16373	NM_010386	ENSMUSG00000037649	H2-DMa	H-2Ma|H2-Ma	histocompatibility 2, class II, locus DMa	protein-coding	111.5	371.5	183.5	101.0	182.5	113.0
Merged-chr19-55655714-4	chr19	55655243	55656243	+	920.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	(CAGTG)n|Simple_repeat|Simple_repeat	46461.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	13.5	30.5	32.5	13.5	31.0	32.5
Merged-chr14-73402284-4	chr14	73401904	73402904	+	920.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-17115.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113993281-4	chr5	113992778	113993778	+	920.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198109, intron 1 of 14)	CpG	479.0	NM_198109	231637.0	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot protein phosphatase 1	protein-coding	10.0	22.0	22.5	10.0	22.0	22.5
Merged-chr4-16196839-4	chr4	16196339	16197339	+	920.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045765, intron 2 of 6)	intron (NR_045765, intron 2 of 6)	32729.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71637553-6	chr8	71637034	71638034	+	920.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 35 of 41)	intron (NM_001029873, intron 35 of 41)	-6428.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	2.5	5.0	8.5	5.5	6.0	3.0
Merged-chr2-28464147-4	chr2	28463642	28464642	+	920.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027040, intron 2 of 2)	intron (NM_027040, intron 2 of 2)	2182.0	NM_027040	69327.0	Mm.46470	NM_027040	ENSMUSG00000026831	1700007K13Rik	Rbest47	RIKEN cDNA 1700007K13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-26452979-5	chr11	26452599	26453599	+	920.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102382, intron 7 of 11)	MTD|LTR|ERVL-MaLR	66015.0	NR_102382	67030.0	Mm.18875	NM_025923	ENSMUSG00000004018	Fancl	2010322C19Rik|AW554273|B230118H11Rik|Phf9|Pog|gcd	Fanconi anemia, complementation group L	protein-coding	70.5	48.0	59.0	44.0	63.5	56.5
Merged-chr3-85195275-4	chr3	85194794	85195794	+	920.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-122225.0	NR_040542	73283.0	Mm.489084	NR_040542	ENSMUSG00000099995	1700036G14Rik	-	RIKEN cDNA 1700036G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3289265-4	chr7	3288769	3289769	+	920.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001093764, exon 1 of 3)	5' UTR (NM_001093764, exon 1 of 3)	231.0	NM_001093764	50918.0	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	1.0	12.0	8.0	2.0	10.0	2.5
Merged-chr9-94698234-3	chr9	94697685	94698685	+	920.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 2 of 15)	intron (NM_177909, intron 2 of 15)	28293.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	11.5	19.0	17.5	13.5	27.0	19.5
Merged-chr11-46779994-3	chr11	46779501	46780501	+	920.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_134248)	TTS (NM_134248)	28833.0	NM_134248	171283.0	Mm.17771	NM_134248	ENSMUSG00000040405	Havcr1	AI503787|KIM-1|TIM-1|Tim1|Timd1	hepatitis A virus cellular receptor 1	protein-coding	2.5	0.0	0.0	3.0	0.0	0.0
Merged-chr16-36657850-3	chr16	36657368	36658368	+	920.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	8209.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-103755494-4	chr5	103755004	103756004	+	920.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080798, intron 1 of 19)	intron (NM_001080798, intron 1 of 19)	931.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68721196-4	chr10	68720697	68721697	+	920.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2549.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	8.0	8.5	9.0	6.5	9.5	0.0
Merged-chr1-165769262-4	chr1	165768747	165769747	+	920.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149310, intron 2 of 4)	intron (NR_149310, intron 2 of 4)	5489.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30414807-5	chr7	30414286	30415286	+	920.7999880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011662, intron 3 of 4)	intron (NM_011662, intron 3 of 4)	998.0	NM_011662	22177.0	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	71.5	232.5	94.0	80.0	135.5	111.0
Merged-chr2-28205585-4	chr2	28205103	28206103	+	920.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019498)	promoter-TSS (NM_019498)	-86.0	NM_001038612	56177.0	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-105232635-4	chr14	105232140	105233140	+	920.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26033.0	NM_029561	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	7.0	0.5	0.0	1.0	0.0	0.5
Merged-chr16-78540569-3	chr16	78540045	78541045	+	920.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001252440, exon 5 of 5)	3' UTR (NM_001252440, exon 5 of 5)	-19771.0	NR_040569	75818.0	Mm.410817	NR_040569		4930478L05Rik	-	RIKEN cDNA 4930478L05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3696308-4	chr12	3695787	3696787	+	920.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 9 of 17)	intron (NM_001162465, intron 9 of 17)	-110693.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87285096-2	chr17	87284596	87285596	+	920.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 1 of 19)	intron (NM_028639, intron 1 of 19)	2210.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-144902363-2	chr4	144901863	144902863	+	920.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	MLT1D|LTR|ERVL-MaLR	9226.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85513415-4	chr8	85512889	85513889	+	920.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173866, intron 6 of 11)	MER5A|DNA|hAT-Charlie	20772.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	14.0	20.5	25.0	14.0	19.0	23.0
Merged-chr2-163929049-4	chr2	163928564	163929564	+	920.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-10381.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	49.5	139.0	108.5	117.5	276.5	252.0
Merged-chr14-14686316-4	chr14	14685837	14686837	+	920.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16688.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	9.0	4.0	5.0	0.0	15.5	4.0
Merged-chr10-122680000-4	chr10	122679485	122680485	+	920.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_106182)	TTS (NR_106182)	670.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	107.0	219.5	125.5	91.5	194.5	149.5
Merged-chr2-91921977-4	chr2	91921499	91922499	+	920.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007699)	promoter-TSS (NM_007699)	-190.0	NM_007699	12672.0	Mm.330405	NM_007699	ENSMUSG00000040495	Chrm4	Chrm-4|M4	cholinergic receptor, muscarinic 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87771242-2	chr11	87770700	87771700	+	920.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172449, intron 14 of 31)	intron (NM_172449, intron 14 of 31)	10659.0	NM_172449	207777.0	Mm.342019	NM_172449	ENSMUSG00000034156	Tspoap1	Bzrap1|D230016K05|PRAX-1|mKIAA0612	TSPO associated protein 1	protein-coding	1.0	4.5	1.5	2.0	6.0	0.5
Merged-chr7-98355462-4	chr7	98354959	98355959	+	920.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168541, intron 2 of 3)	intron (NM_001168541, intron 2 of 3)	5829.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110184857-4	chr7	110184368	110185368	+	920.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEi|LINE|L1	-36835.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-105227189-4	chr13	105226670	105227670	+	920.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360891, intron 5 of 7)	Lx9|LINE|L1	65844.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	16.5	13.5	15.5	18.5	19.5	9.0
Merged-chr17-72908973-3	chr17	72908473	72909473	+	920.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TAAA)n|Simple_repeat|Simple_repeat	-9332.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0.0	0.0	5.0	0.0	0.0	1.5
Merged-chr5-90785981-4	chr5	90785465	90786465	+	920.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_203320)	promoter-TSS (NM_203320)	-136.0	NM_203320	330122.0	Mm.244289	NM_203320	ENSMUSG00000029379	Cxcl3	Dcip1|Gm1960	chemokine (C-X-C motif) ligand 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89905206-4	chr3	89904722	89905722	+	920.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	7974.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	6.0	3.5	6.5	1.5	8.0	2.0
Merged-chr16-64907654-4	chr16	64907082	64908082	+	920.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55581.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6367036-3	chr4	6366498	6367498	+	920.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	1318.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34629209-4	chr6	34628709	34629709	+	920.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 1 of 13)	intron (NM_001347100, intron 1 of 13)	30705.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	0.0	12.0	2.5	0.0	5.5	1.5
Merged-chr7-67551437-4	chr7	67550934	67551934	+	920.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028144, intron 5 of 8)	intron (NR_028144, intron 5 of 8)	93802.0	NM_175124	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94364145-3	chr8	94363648	94364648	+	920.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019415, intron 24 of 24)	intron (NM_019415, intron 24 of 24)	-22281.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-56569145-4	chr6	56568636	56569636	+	920.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	135563.0	NM_025520	66373.0	Mm.25642	NM_025520	ENSMUSG00000091625	Lsm5	2010208O10Rik|2310034K10Rik	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64047219-3	chr15	64046727	64047727	+	920.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	12537.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-4787257-3	chr10	4786754	4787754	+	920.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302531, intron 4 of 8)	MLT1B|LTR|ERVL-MaLR	77096.0	NM_001302533	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86473855-2	chr11	86473355	86474355	+	920.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10802.0	NM_029788	76892.0	Mm.262707	NM_029788	ENSMUSG00000020521	Rnft1	0610013E23Rik|AV007605	ring finger protein, transmembrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95551933-2	chr10	95551433	95552433	+	920.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358996, intron 2 of 4)	B2_Mm2|SINE|B2	7388.0	NR_037212	100526463.0		NR_037212	ENSMUSG00000092867	Mir3058	mir-3058|mmu-mir-3058	microRNA 3058	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91934446-2	chr16	91933946	91934946	+	920.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2816.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	1.5	0.0	0.0	1.5
Merged-chr8-106585829-4	chr8	106585325	106586325	+	920.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1318.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164794489-4	chr2	164794000	164795000	+	920.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133240, intron 5 of 5)	intron (NM_133240, intron 5 of 5)	8479.0	NM_133924	101113.0	Mm.295647	NM_133924	ENSMUSG00000050373	Snx21	5730407K14Rik|AI481716	sorting nexin family member 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-50074513-2	chr18	50074057	50075057	+	920.625	f0_balb.idr|f1_balb.idr	intron (NM_134131, intron 1 of 1)	intron (NM_134131, intron 1 of 1)	-20895.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	2.0	5.5	8.0	4.0	5.5	18.5
Merged-chr19-55931433-2	chr19	55930933	55931933	+	920.625	f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 15 of 15)	intron (NR_138565, intron 15 of 15)	36112.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61861187-4	chr11	61860688	61861688	+	920.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie1a|DNA|hAT-Charlie	-6096.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4239086-4	chr18	4238588	4239588	+	920.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73256.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93192921-4	chr16	93192412	93193412	+	920.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	160277.0	NR_040486	69857.0	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56390024-3	chr19	56389534	56390534	+	920.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286552)	promoter-TSS (NM_001286552)	4.0	NM_198059	18175.0	Mm.386769	NM_008733	ENSMUSG00000049134	Nrap	-	nebulin-related anchoring protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34434110-5	chr1	34433576	34434576	+	920.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_039562)	promoter-TSS (NR_039562)	-877.0	NR_039562	100628580.0		NR_039562	ENSMUSG00000092852	Mir5103	mir-5103|mmu-mir-5103|mu-mir-5103	microRNA 5103	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31700394-4	chr16	31699841	31700841	+	920.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357281, intron 1 of 22)	B1_Mus1|SINE|Alu	4793.0	NM_001357281	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-10645913-3	chr8	10645392	10646392	+	920.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	236562.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13189755-4	chr10	13189250	13190250	+	920.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181470, intron 3 of 10)	intron (NM_181470, intron 3 of 10)	3387.0	NM_181470	353258.0	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 ribosome biogenesis factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47589989-4	chr9	47589456	47590456	+	920.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	MIRb|SINE|MIR	59604.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	24.0	11.0	10.5	30.0	21.0	21.5
Merged-chr12-85270432-4	chr12	85269941	85270941	+	920.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304475, intron 1 of 11)	CpG	150.0	NM_001304475	217716.0	Mm.311981	NM_145446	ENSMUSG00000021245	Mlh3	AV125803|BB126472	mutL homolog 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41614327-4	chr4	41613836	41614836	+	920.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175138, exon 11 of 20)	exon (NM_175138, exon 11 of 20)	25966.0	NM_027147	69638.0	Mm.372459	NM_027147	ENSMUSG00000028445	Enho	1110065P19Rik|2310040A07Rik	energy homeostasis associated	protein-coding	4.0	1.0	0.0	5.5	1.0	0.0
Merged-chr2-44961254-4	chr2	44960753	44961753	+	920.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61924.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22883063-3	chr8	22882573	22883573	+	920.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081149, intron 3 of 17)	intron (NM_001081149, intron 3 of 17)	23534.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	0.0	6.0	0.0	6.0	0.0	2.0
Merged-chr16-90386930-3	chr16	90386442	90387442	+	920.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015755, intron 1 of 10)	CpG	545.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10784654-3	chr16	10784175	10785175	+	920.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001271603, exon 2 of 2)	exon (NM_001271603, exon 2 of 2)	861.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-15750267-3	chr6	15749754	15750754	+	920.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	29593.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-24979249-4	chr19	24978774	24979774	+	920.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-17658.0	NM_146097	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	21.5	9.0	14.0	9.5	6.5	16.5
Merged-chr11-79878825-4	chr11	79878300	79879300	+	920.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	83587.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	6.5	23.5	28.5	32.5	18.0	23.0
Merged-chr8-14815262-4	chr8	14814746	14815746	+	920.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 9 of 15)	intron (NM_172910, intron 9 of 15)	-73290.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	34.5	41.5	24.0	23.0	62.5	28.5
Merged-chr17-87155583-4	chr17	87155127	87156127	+	920.529785	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B1|LTR|ERVL	39315.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	33.5	27.0	48.5	136.0	265.0	223.0
Merged-chr19-5801174-4	chr19	5800688	5801688	+	920.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_002847, exon 1 of 1)	non-coding (NR_002847, exon 1 of 1)	1484.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	9.0	23.0	21.5	3.5	12.0	16.0
Merged-chr7-144971193-4	chr7	144970702	144971702	+	920.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31277.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	0.0	0.0	1.5	0.0	3.0	6.0
Merged-chr10-78162707-2	chr10	78162207	78163207	+	920.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_138601, exon 7 of 7)	exon (NM_138601, exon 7 of 7)	7061.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-100531136-4	chr3	100530636	100531636	+	920.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57C2|LTR|ERV1	-41944.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	30.0	52.0	82.5	4.5	23.0	16.5
Merged-chr6-97456830-1	chr6	97456330	97457330	+	920.5	f0_balb.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	2456.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	347.5	740.0	543.5	291.5	640.5	468.0
Merged-chr4-116655777-4	chr4	116655267	116656267	+	920.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4093.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52626043-2	chr13	52625543	52626543	+	920.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 7 of 13)	intron (NM_011518, intron 7 of 13)	29161.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32439357-2	chr2	32438857	32439857	+	920.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146118, intron 1 of 10)	intron (NM_146118, intron 1 of 10)	-8206.0	NM_001164358	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-58325030-2	chr10	58324530	58325530	+	920.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026148, intron 1 of 9)	L1MB3|LINE|L1	1483.0	NM_026148	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-84116456-2	chr6	84115956	84116956	+	920.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 30 of 54)	intron (NM_001077694, intron 30 of 54)	97070.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67585547-2	chr10	67585047	67586047	+	920.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13588.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124900494-2	chr6	124899994	124900994	+	920.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11211.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119444435-3	chr13	119443940	119444940	+	920.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145457, intron 4 of 10)	intron (NM_145457, intron 4 of 10)	15538.0	NM_145457	218693.0	Mm.490243	NM_145457	ENSMUSG00000025451	Paip1	PAIP-1	polyadenylate binding protein-interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113636494-4	chr5	113635998	113636998	+	920.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	7105.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-13537353-2	chr13	13536853	13537853	+	920.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-53056.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38650545-4	chr15	38650043	38651043	+	920.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11361.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-90661425-2	chr6	90660925	90661925	+	920.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001134384, exon 14 of 14)	3' UTR (NM_001134384, exon 14 of 14)	42179.0	NM_001037493	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155598925-2	chr4	155598425	155599425	+	920.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR42-int|LTR|ERVK	-2491.0	NM_177186	320541.0	Mm.306018	NM_177186	ENSMUSG00000042202	Slc35e2	A530082C11Rik|AI957035	solute carrier family 35, member E2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45958717-4	chr19	45958208	45959208	+	920.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198296, intron 9 of 25)	intron (NM_198296, intron 9 of 25)	-39429.0	NR_152221	100174921.0	Mm.487206	NR_152221		4930505N22Rik	-	RIKEN cDNA 4930505N22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109427276-2	chr11	109426776	109427776	+	920.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252193, intron 2 of 7)	intron (NM_001252193, intron 2 of 7)	1056.0	NM_001252193	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	0.0	2.5	3.0	0.0	2.5	3.0
Merged-chr7-121034436-6	chr7	121033884	121034884	+	920.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021554)	promoter-TSS (NM_021554)	-61.0	NM_021554	59052.0	Mm.29122	NM_021554	ENSMUSG00000030876	Mettl9	0610012D09Rik|AA517660|Drev|MNCb-5680	methyltransferase like 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64371780-4	chr5	64371298	64372298	+	920.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96144.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	4.0	0.5	1.0	4.0	0.5	1.5
Merged-chr9-108344349-6	chr9	108343882	108344882	+	920.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3449.0	NM_001311157	22258.0	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-144335870-4	chr1	144335362	144336362	+	920.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86758.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56256966-4	chr19	56256455	56257455	+	920.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30957.0	NM_001329936	226243.0	Mm.25791	NM_146101	ENSMUSG00000025075	Habp2	AI035669|FSAP|HABP|HGFAL|PHBP	hyaluronic acid binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77784459-3	chr11	77783967	77784967	+	920.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011586, intron 1 of 39)	intron (NM_011586, intron 1 of 39)	7232.0	NM_001291212	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124922207-4	chr8	124921737	124922737	+	920.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053207, intron 1 of 4)	intron (NM_053207, intron 1 of 4)	24351.0	NM_001111141	244666.0	Mm.482915	NM_001111141	ENSMUSG00000031986	Sprtn	Gm505	SprT-like N-terminal domain	protein-coding	41.0	97.0	26.5	46.0	95.5	37.5
Merged-chr4-70515665-4	chr4	70515185	70516185	+	920.4249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172694, intron 1 of 5)	intron (NM_172694, intron 1 of 5)	19243.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-12206171-4	chr5	12205669	12206669	+	920.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-176997.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59578236-4	chr10	59577725	59578725	+	920.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033259, intron 1 of 7)	intron (NM_001033259, intron 1 of 7)	38467.0	NM_001033259	215999.0	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75187034-4	chr14	75186520	75187520	+	920.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	50595.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-52094895-4	chr16	52094387	52095387	+	920.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	63338.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117308094-4	chr11	117307599	117308599	+	920.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-23616.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95842140-3	chr13	95841610	95842610	+	920.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	49812.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	3.0	20.0	16.5	13.0	14.0	20.5
Merged-chr11-47020177-3	chr11	47019675	47020675	+	920.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 6 of 7)	intron (NM_011891, intron 6 of 7)	209376.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	9.0	12.0	14.0	9.0	11.0	14.0
Merged-chr15-99416720-4	chr15	99416229	99417229	+	920.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23510.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	3.0	17.5	4.0	0.5	0.5	3.0
Merged-chr4-83274371-4	chr4	83273876	83274876	+	920.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 2 of 19)	intron (NM_027238, intron 2 of 19)	49813.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	5.5	59.0	44.0	54.0	105.0	68.0
Merged-chr3-36771739-4	chr3	36771254	36772254	+	920.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-81587.0	NM_019510	22065.0	Mm.74363	NM_019510	ENSMUSG00000027716	Trpc3	Mwk|Trcp3|Trp3|Trrp3	transient receptor potential cation channel, subfamily C, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4464855-4	chr16	4464316	4465316	+	920.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44318.0	NM_009624	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75881414-2	chr11	75880914	75881914	+	920.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029548, intron 3 of 7)	MLT1A|LTR|ERVL-MaLR	29645.0	NM_029548	380714.0	Mm.425697	NM_029548	ENSMUSG00000020847	Rph3al	Gm1753|Noc2	rabphilin 3A-like (without C2 domains)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-99200889-2	chr4	99200383	99201383	+	920.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175029, intron 1 of 10)	MTD|LTR|ERVL-MaLR	6736.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	2.0	33.5	11.5	0.0	32.5	10.0
Merged-chr18-75283555-2	chr18	75283055	75284055	+	920.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027727, intron 16 of 16)	intron (NM_027727, intron 16 of 16)	13762.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	6.0	3.5	0.5	4.0	0.0	0.0
Merged-chr4-130902895-2	chr4	130902395	130903395	+	920.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10439.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47367462-3	chr14	47366846	47367846	+	920.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6514.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	37.5	42.5	18.0	26.0	39.5	25.0
Merged-chr17-73951154-4	chr17	73950636	73951636	+	920.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011723)	promoter-TSS (NM_011723)	-940.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86283907-3	chr17	86283411	86284411	+	920.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	3267.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	3.5	1.5	4.0	2.0	2.0	3.5
Merged-chr4-47258759-3	chr4	47258256	47259256	+	920.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009928, exon 8 of 40)	exon (NM_009928, exon 8 of 40)	50744.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46106050-4	chr11	46105540	46106540	+	920.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291890, intron 5 of 22)	intron (NM_001291890, intron 5 of 22)	3770.0	NR_106177	102465996.0		NR_106177	ENSMUSG00000098942	Mir8100	Gm27638|mmu-mir-8100	microRNA 8100	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-28013541-3	chr3	28013003	28014003	+	920.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 1 of 25)	intron (NM_008875, intron 1 of 25)	29332.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44495607-3	chr10	44495111	44496111	+	920.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36863.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100728805-3	chr12	100728305	100729305	+	920.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-3685.0	NM_153587	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130918782-6	chr4	130918226	130919226	+	920.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	MIRb|SINE|MIR	5392.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-10602641-3	chr8	10602142	10603142	+	920.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001319151, intron 33 of 34)	ORR1E|LTR|ERVL-MaLR	279812.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-59557208-3	chr14	59556679	59557679	+	920.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40780.0	NM_001168537	71891.0	Mm.439850	NM_027986	ENSMUSG00000021982	Cdadc1	2310010M10Rik|AI449174|AI463398|BB130816|NYD-SP15	cytidine and dCMP deaminase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180974580-4	chr1	180974075	180975075	+	920.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_144794, exon 23 of 23)	3' UTR (NM_144794, exon 23 of 23)	32057.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35639218-3	chr8	35638722	35639722	+	920.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 1 of 2)	MLT1A|LTR|ERVL-MaLR	-50202.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	2.5	18.0	6.5	0.0	1.0	2.0
Merged-chr12-105967219-3	chr12	105966720	105967720	+	920.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43043.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34296849-3	chr17	34296356	34297356	+	920.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9011.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	209.5	571.5	328.0	226.0	606.5	355.0
Merged-chr9-45261676-5	chr9	45261103	45262103	+	920.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136903, intron 4 of 5)	intron (NR_136903, intron 4 of 5)	5104.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	2.0	4.5	4.0	4.0	5.5	5.5
Merged-chr12-25094682-9	chr12	25094176	25095176	+	920.3312380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010496, intron 2 of 2)	intron (NM_010496, intron 2 of 2)	1416.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	169.5	464.0	278.0	220.5	553.0	374.0
Merged-chr17-32143357-4	chr17	32142872	32143872	+	920.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008716, exon 24 of 33)	exon (NM_008716, exon 24 of 33)	23480.0	NM_008716	18131.0	Mm.439741	NM_008716	ENSMUSG00000038146	Notch3	AW229011|N3|hpbk	notch 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-63898901-4	chr11	63898372	63899372	+	920.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018805, intron 1 of 1)	intron (NM_018805, intron 1 of 1)	23412.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35749414-4	chr17	35748848	35749848	+	920.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-23102.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	40.0	75.5	73.0	0.5	14.0	13.5
Merged-chr13-37964770-4	chr13	37964237	37965237	+	920.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29471.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	5.5	12.0	3.5	4.0	28.5	16.0
Merged-chr19-29430680-4	chr19	29430146	29431146	+	920.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 2 of 5)	intron (NM_021396, intron 2 of 5)	19727.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35927620-7	chr18	35927121	35928121	+	920.271423	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37209.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	2.0	0.0	0.0	0.0	1.5	0.0
Merged-chr8-36184273-3	chr8	36183761	36184761	+	920.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28251.0	NR_151736	330738.0	Mm.128075	NR_151736	ENSMUSG00000109704	Gm38414	A230084N10|Gm45568	predicted gene, 38414	ncRNA	1.0	9.5	7.0	1.0	9.5	8.0
Merged-chr5-66299109-4	chr5	66298606	66299606	+	920.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001201413, exon 17 of 17)	3' UTR (NM_001201413, exon 17 of 17)	38265.0	NM_027602	70918.0	Mm.23166	NM_027602	ENSMUSG00000029206	Nsun7	4921525L17Rik	NOL1/NOP2/Sun domain family, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-129532322-4	chr3	129531835	129532835	+	920.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130450)	promoter-TSS (NM_130450)	-51.0	NM_130450	170439.0	Mm.314113	NM_130450	ENSMUSG00000041220	Elovl6	C77826|FAE|LCE	ELOVL family member 6, elongation of long chain fatty acids (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25598346-2	chr8	25597846	25598846	+	920.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173012)	promoter-TSS (NM_173012)	-859.0	NM_173012	270035.0	Mm.268349	NM_173012	ENSMUSG00000037363	Letm2	6030453H13|D030041N04Rik	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163838252-4	chr2	163837764	163838764	+	920.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15486.0	NM_001030292	241769.0	Mm.295337	NM_001030292	ENSMUSG00000035238	Kcnk15	KCNK11|KCNK14|KT3.3|TASK5	potassium channel, subfamily K, member 15	protein-coding	1.5	0.0	1.0	0.0	1.0	1.0
Merged-chr9-70839760-2	chr9	70839260	70840260	+	920.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	95048.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-73711002-4	chr6	73710511	73711511	+	920.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-239990.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70537315-2	chr8	70536805	70537805	+	920.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2370.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	16.0	52.5	25.0	9.0	18.5	24.5
Merged-chr7-128180272-3	chr7	128179747	128180747	+	920.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029872, intron 5 of 30)	intron (NM_001029872, intron 5 of 30)	6301.0	NM_001029872	381924.0	Mm.334257	NM_001029872	ENSMUSG00000070369	Itgad	Cd11d	integrin, alpha D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25275754-2	chr7	25275254	25276254	+	920.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302811, intron 2 of 20)	intron (NM_001302811, intron 2 of 20)	-6425.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-69994878-3	chr9	69994390	69995390	+	920.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008238, intron 1 of 9)	intron (NM_001008238, intron 1 of 9)	5424.0	NM_001008238	12175.0	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134929812-4	chr4	134929303	134930303	+	920.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1177.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51475916-4	chr3	51475402	51476402	+	920.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_053089)	TTS (NM_053089)	-8064.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120564671-4	chr2	120564162	120565162	+	920.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011743)	promoter-TSS (NM_011743)	-803.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	54.0	187.0	100.5	45.0	149.5	97.5
Merged-chr1-36231085-4	chr1	36230576	36231576	+	920.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198899, intron 2 of 40)	intron (NM_198899, intron 2 of 40)	13226.0	NM_198899	320011.0	Mm.261022	NM_198899	ENSMUSG00000037470	Uggt1	0910001L17Rik|A930007H10Rik|AA589501|AI414429|AI448372|C820010P03Rik|GT|UGT1|Ugcgl1	UDP-glucose glycoprotein glucosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101386104-4	chr7	101385655	101386655	+	920.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027180, exon 2 of 30)	exon (NM_027180, exon 2 of 30)	629.0	NM_027180	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	1.5	1.5	0.0	0.0	2.5	0.5
Merged-chr17-3288536-2	chr17	3288032	3289032	+	920.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-38041.0	NM_001122998	24001.0	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	0.0	0.0	3.0	0.0	4.0	1.5
Merged-chr7-127215566-4	chr7	127215175	127216175	+	920.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_017461, exon 8 of 11)	exon (NM_017461, exon 8 of 11)	2770.0	NM_017461	54204.0	Mm.18	NM_017461	ENSMUSG00000000486	Sept1	Diff6|Pnutl3	septin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40431251-3	chr12	40430748	40431748	+	920.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172575, intron 1 of 12)	intron (NM_172575, intron 1 of 12)	14542.0	NM_172575	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-83673305-4	chr2	83672807	83673807	+	920.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28729.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	0.0	2.5	0.5	0.0	2.5	0.5
Merged-chr10-81410811-5	chr10	81410052	81411052	+	920.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152732, intron 1 of 1)	intron (NR_152732, intron 1 of 1)	977.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-101494036-4	chr3	101493548	101494548	+	920.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110659.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr11-63906724-4	chr11	63906275	63907275	+	920.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018805, intron 1 of 1)	intron (NM_018805, intron 1 of 1)	15509.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	31.0	52.5	52.0	23.0	25.0	24.0
Merged-chr6-28319297-4	chr6	28318793	28319793	+	920.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57692.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36462975-4	chr5	36462446	36463446	+	920.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126490, intron 1 of 1)	intron (NR_126490, intron 1 of 1)	1908.0	NR_126490	76710.0	Mm.165495	NR_126488	ENSMUSG00000039563	2210406O10Rik	-	RIKEN cDNA 2210406O10 gene	ncRNA	0.0	2.0	6.5	0.0	0.0	0.0
Merged-chr5-17975424-4	chr5	17974923	17975923	+	920.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 1 of 7)	intron (NM_001081143, intron 1 of 7)	12853.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55767431-4	chr19	55766924	55767924	+	920.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	25614.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-5083975-3	chr7	5083467	5084467	+	920.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001252454, exon 2 of 11)	exon (NM_001252454, exon 2 of 11)	3732.0	NM_001252454	13854.0	Mm.3091	NM_010147	ENSMUSG00000035203	Epn1	AA269831|Ibp1	epsin 1	protein-coding	7.0	26.0	15.5	5.0	50.0	22.5
Merged-chr7-83639267-3	chr7	83638765	83639765	+	920.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023377, intron 5 of 5)	intron (NM_023377, intron 5 of 5)	7248.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68141783-3	chr10	68141293	68142293	+	920.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 4 of 9)	intron (NM_023598, intron 4 of 9)	136933.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	20.5	59.0	25.0	32.5	92.0	44.0
Merged-chr1-89524638-4	chr1	89524177	89525177	+	920.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	69866.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134286367-4	chr4	134285901	134286901	+	920.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146156, intron 1 of 2)	intron (NM_146156, intron 1 of 2)	852.0	NM_001163794	230809.0	Mm.22778	NM_146156	ENSMUSG00000050890	Pdik1l	BC027088|stk35l2	PDLIM1 interacting kinase 1 like	protein-coding	21.0	35.0	28.0	11.5	15.5	19.0
Merged-chr3-96501001-4	chr3	96500504	96501504	+	920.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24181.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	20.0	54.0	28.0	21.5	45.5	17.5
Merged-chr7-97383655-4	chr7	97383158	97384158	+	920.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199035, intron 7 of 12)	intron (NM_199035, intron 7 of 12)	12041.0	NM_199035	381903.0	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	9.5	0.0	5.5	7.5	0.5	3.5
Merged-chr12-9052252-4	chr12	9051752	9052752	+	920.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22255.0	NM_029321	75516.0	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79863596-3	chr11	79863092	79864092	+	920.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98795.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	6.0	2.0	1.0	0.0	0.0	2.5
Merged-chr11-104001705-4	chr11	104001206	104002206	+	920.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34835.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181282393-4	chr2	181281893	181282893	+	920.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198169, intron 1 of 9)	intron (NM_198169, intron 1 of 9)	5573.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181239042-4	chr2	181238535	181239535	+	920.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183162, intron 4 of 18)	L1_Mus3|LINE|L1	2992.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-79562730-8	chr14	79562222	79563222	+	920.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286412, intron 3 of 7)	intron (NM_001286412, intron 3 of 7)	-24938.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94467163-3	chr13	94466679	94467679	+	920.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009680, intron 15 of 26)	intron (NM_009680, intron 15 of 26)	108219.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-43842027-4	chr10	43841518	43842518	+	920.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	16111.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103030420-4	chr11	103029914	103030914	+	920.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008707, intron 1 of 11)	intron (NM_008707, intron 1 of 11)	1871.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86205493-4	chr15	86204983	86205983	+	920.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-8976.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109467457-4	chr3	109466889	109467889	+	920.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	-106618.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	10.0	14.0	23.0	27.0	20.5	20.5
Merged-chr10-128674868-2	chr10	128674368	128675368	+	920.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173733)	promoter-TSS (NM_173733)	-950.0	NM_173733	211389.0	Mm.23352	NM_173733	ENSMUSG00000049858	Suox	SO	sulfite oxidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-79799247-2	chr7	79798747	79799747	+	920.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5657.0	NM_008588	17292.0	Mm.1404	NM_008588	ENSMUSG00000030544	Mesp1	bHLHc5	mesoderm posterior 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-53439092-4	chr10	53438583	53439583	+	920.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	29201.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-107967440-2	chr5	107966940	107967940	+	920.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	intron (NM_026062, intron 1 of 4)	19637.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	2.5	12.0	12.5	7.5	11.0	11.5
Merged-chr17-88043024-3	chr17	88042522	88043522	+	920.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081034, intron 1 of 22)	intron (NM_001081034, intron 1 of 22)	21910.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	26.0	60.0	53.5	36.5	47.0	51.5
Merged-chr1-162550026-4	chr1	162549539	162550539	+	920.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1694.0	NM_144877	71449.0	Mm.270569	NM_144877	ENSMUSG00000026694	Mettl13	5630401D24Rik	methyltransferase like 13	protein-coding	6.0	6.5	2.5	5.5	9.5	3.5
Merged-chr3-79128953-3	chr3	79128468	79129468	+	920.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099624, intron 1 of 23)	intron (NM_001099624, intron 1 of 23)	15919.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-87143314-4	chr5	87142815	87143815	+	920.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-2975.0	NM_009467	22238.0	Mm.291575	NM_009467	ENSMUSG00000054630	Ugt2b5	AI118071|M-1|Udpgt-3|Udpgt2b5|Ugt2b17	UDP glucuronosyltransferase 2 family, polypeptide B5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74926821-2	chr11	74926321	74927321	+	920.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 1 of 18)	intron (NM_001002764, intron 1 of 18)	949.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79695434-3	chr2	79694955	79695955	+	920.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12325.0	NM_172420	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	7.0	17.5	7.5	0.0	7.0	1.0
Merged-chr11-3122964-2	chr11	3122460	3123460	+	920.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A1|LTR|ERVL-MaLR	-1061.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-76676500-2	chr2	76676000	76677000	+	920.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031256, intron 1 of 7)	intron (NM_031256, intron 1 of 7)	1185.0	NM_031256	83435.0	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20846657-2	chr14	20846157	20847157	+	920.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	9995.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	3.5	22.0	11.0	4.5	19.0	4.5
Merged-chr3-153261731-2	chr3	153261231	153262231	+	920.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 3 of 4)	intron (NM_011372, intron 3 of 4)	36918.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-34068086-1	chr15	34067586	34068586	+	920.0	f1_balb.idr	Intergenic	B1_Mur4|SINE|Alu	-14633.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	12.0	12.5	17.5	10.5	7.5	9.0
Merged-chr13-43753241-1	chr13	43752741	43753741	+	920.0	f1_balb.idr	Intergenic	Intergenic	-31871.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	23.0	37.0	22.0	26.0	21.0	14.0
Merged-chr10-121475654-7	chr10	121475085	121476085	+	920.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	CpG	665.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79680795-1	chr15	79680295	79681295	+	920.0	f1_balb.idr	intron (NM_028792, intron 1 of 3)	intron (NM_028792, intron 1 of 3)	7077.0	NM_028792	74158.0	Mm.323393	NM_028792	ENSMUSG00000022426	Josd1	1300006C06Rik|mKIAA0063	Josephin domain containing 1	protein-coding	3.5	4.0	0.0	1.0	0.0	0.0
Merged-chr11-83192285-3	chr11	83191760	83192760	+	920.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011409, intron 1 of 2)	intron (NM_011409, intron 1 of 2)	930.0	NM_011409	20557.0	Mm.290922	NM_011409	ENSMUSG00000018986	Slfn3	-	schlafen 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131423167-6	chr2	131422676	131423676	+	920.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68686.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90213938-2	chr9	90213438	90214438	+	920.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 10 of 12)	intron (NM_194334, intron 10 of 12)	50960.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164803189-2	chr2	164802689	164803689	+	920.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133240, intron 1 of 5)	intron (NM_133240, intron 1 of 5)	1692.0	NM_133240	170789.0	Mm.277878	NM_133240	ENSMUSG00000017307	Acot8	PTE-2|Pte1	acyl-CoA thioesterase 8	protein-coding	0.0	1.5	0.0	9.5	3.5	4.5
Merged-chr5-137485655-2	chr5	137485155	137486155	+	920.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312875, intron 1 of 4)	intron (NM_001312875, intron 1 of 4)	161.0	NM_007942	13856.0	Mm.349116	NM_007942	ENSMUSG00000029711	Epo	-	erythropoietin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27257070-2	chr7	27256570	27257570	+	920.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133770, intron 14 of 14)	ZP3AR|Satellite|Satellite	-1691.0	NM_010950	18223.0	Mm.458153	NM_010950	ENSMUSG00000063160	Numbl	nbl	numb-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69413653-2	chr11	69413228	69414228	+	920.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001017426)	promoter-TSS (NM_001017426)	-53.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.0	2.0	6.0	1.5	0.0	0.0
Merged-chr17-28522700-4	chr17	28522222	28523222	+	920.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8139.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-98050855-3	chr3	98050355	98051355	+	920.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 2 of 33)	intron (NM_010928, intron 2 of 33)	37317.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5039555-1	chr2	5039055	5040055	+	920.0	f1_balb.idr	intron (NM_001356487, intron 6 of 13)	intron (NM_001356487, intron 6 of 13)	24562.0	NM_181848	71648.0	Mm.116942	NM_181848	ENSMUSG00000026672	Optn	4930441O07Rik|FIP2|HYPL|NRP	optineurin	protein-coding	1.5	2.0	7.0	2.0	9.0	0.0
Merged-chr17-67450633-4	chr17	67450131	67451131	+	920.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96140.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110780045-3	chr5	110779507	110780507	+	920.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_152254)	TTS (NR_152254)	589.0	NM_019700	56361.0	Mm.23528	NM_019700	ENSMUSG00000029507	Pus1	A730013B20Rik|MPUS1|mPus1p	pseudouridine synthase 1	protein-coding	29.5	36.5	35.5	20.0	36.0	20.5
Merged-chr9-90246492-2	chr9	90245992	90246992	+	920.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 2 of 12)	intron (NM_194334, intron 2 of 12)	24277.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-148322772-4	chr6	148322281	148323281	+	920.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198967, intron 8 of 19)	intron (NM_198967, intron 8 of 19)	-31875.0	NR_003634	66184.0	Mm.391542	NM_025405	ENSMUSG00000063171	Rps4l	1110033J19Rik|AA407494|Rps4y2	ribosomal protein S4-like	pseudo	0.0	0.0	4.5	0.5	3.0	1.0
Merged-chr4-101161548-2	chr4	101161048	101162048	+	920.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 16 of 24)	intron (NM_146145, intron 16 of 24)	92510.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101131522-1	chr15	101131022	101132022	+	920.0	f1_balb.idr	intron (NM_001277259, intron 3 of 11)	intron (NM_001277259, intron 3 of 11)	3000.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	11.5	18.5	14.0	10.0	10.0	11.0
Merged-chr14-21984965-3	chr14	21984448	21985448	+	920.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145459, exon 3 of 3)	exon (NM_145459, exon 3 of 3)	4653.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8447385-2	chr15	8446885	8447885	+	920.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2922.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121805800-2	chr11	121805300	121806300	+	920.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24418.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-142063130-4	chr4	142062622	142063622	+	919.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-21176.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82147774-4	chr15	82147259	82148259	+	919.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033218, intron 1 of 18)	CpG	490.0	NM_033218	20788.0	Mm.38016	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-52604523-4	chr12	52604028	52605028	+	919.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	U6|snRNA|snRNA	-2206.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	124.0	302.5	290.0	143.5	302.5	258.5
Merged-chr12-73537890-4	chr12	73537388	73538388	+	919.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8507.0	NM_178715	238257.0	Mm.251196	NM_178715	ENSMUSG00000034435	Tmem30b	9130011B11Rik	transmembrane protein 30B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141458551-4	chr7	141458053	141459053	+	919.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025802, intron 5 of 7)	intron (NM_025802, intron 5 of 7)	-2541.0	NM_001025103	213573.0	Mm.386851	NM_001025103	ENSMUSG00000048200	Cracr2b	6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a	calcium release activated channel regulator 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77801143-4	chr18	77800631	77801631	+	919.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 1 of 14)	intron (NM_013831, intron 1 of 14)	-4741.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64232529-5	chr17	64231941	64232941	+	919.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99442.0	NM_144859	224938.0	Mm.489681	NM_144859	ENSMUSG00000024083	Pja2	AI447901|AL022700|Neurodap1|mKIAA0438	praja ring finger ubiquitin ligase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20897359-3	chr9	20896824	20897824	+	919.93335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016876, intron 5 of 10)	B4A|SINE|B4	1266.0	NM_016876	53356.0	Mm.427309	NM_016876	ENSMUSG00000070319	Eif3g	44kDa|D0Jmb4|Eif3s4|TU-189B2|eIF3-p44|p44	eukaryotic translation initiation factor 3, subunit G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24311405-4	chr2	24310905	24311905	+	919.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20209.0	NM_153077	215274.0	Mm.218750	NM_153077	ENSMUSG00000046845	Il1f10	-	interleukin 1 family, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-45923424-3	chr1	45922902	45923902	+	919.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016917, intron 2 of 7)	intron (NM_016917, intron 2 of 7)	2192.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102999003-4	chr2	102998505	102999505	+	919.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74508.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	7.0	3.0	4.0	16.5	5.5	2.0
Merged-chr3-16210121-4	chr3	16209631	16210631	+	919.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172677, intron 5 of 5)	intron (NM_172677, intron 5 of 5)	26966.0	NM_172677	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70969207-4	chr12	70968714	70969714	+	919.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5409.0	NM_001310595	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96326618-4	chr9	96326091	96327091	+	919.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37124.0	NM_001357213	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	5.0	18.5	23.5	2.5	8.5	6.5
Merged-chr5-93264840-4	chr5	93264379	93265379	+	919.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2694.0	NM_007635	12452.0	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	39.5	103.0	42.0	20.5	52.5	19.0
Merged-chr11-88950414-4	chr11	88949910	88950910	+	919.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029023, intron 2 of 12)	intron (NM_029023, intron 2 of 12)	5032.0	NM_029023	74617.0	Mm.34126	NM_029023	ENSMUSG00000000278	Scpep1	2410018F01Rik|4833411K15Rik|AI957256|Risc	serine carboxypeptidase 1	protein-coding	35.0	98.0	63.0	43.0	86.5	111.0
Merged-chr16-24933457-2	chr16	24932960	24933960	+	919.833374	f0_balb.idr|f0_c57.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-126179.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54002425-2	chr11	54001925	54002925	+	919.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019687, intron 3 of 9)	intron (NM_019687, intron 3 of 9)	-22092.0	NM_019723	56517.0	Mm.154284	NM_019723	ENSMUSG00000063652	Slc22a21	Octn3|Slc22a9	solute carrier family 22 (organic cation transporter), member 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167762762-2	chr2	167762262	167763262	+	919.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71585.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143072148-2	chr7	143071624	143072624	+	919.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_020277, exon 25 of 25)	3' UTR (NM_020277, exon 25 of 25)	2756.0	NM_001115085	56844.0	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	0.0	3.0	0.0	0.0	0.5	0.0
Merged-chr8-120119732-2	chr8	120119232	120120232	+	919.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172286, intron 1 of 12)	intron (NM_172286, intron 1 of 12)	5580.0	NM_001163761	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84555628-3	chr2	84555132	84556132	+	919.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-48759.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	8.5	13.0	2.0	6.0	4.5	1.0
Merged-chr17-48270906-4	chr17	48270416	48271416	+	919.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033922, intron 4 of 5)	intron (NM_001033922, intron 4 of 5)	6621.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24608611-2	chr16	24608111	24609111	+	919.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	79297.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117388493-3	chr5	117387985	117388985	+	919.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028128, intron 1 of 10)	intron (NM_028128, intron 1 of 10)	538.0	NM_028128	72151.0	Mm.27997	NM_028128	ENSMUSG00000029363	Rfc5	2610020K06Rik|2610209F07Rik|36.5kDa|36kDa|Recc5	replication factor C (activator 1) 5	protein-coding	4.0	13.5	7.0	6.0	6.5	13.5
Merged-chr12-112897076-3	chr12	112896567	112897567	+	919.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	23474.0	NR_105906	102465567.0		NR_105906	ENSMUSG00000098338	Mir6941	Gm27923|mmu-mir-6941	microRNA 6941	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-27296740-3	chr16	27296245	27297245	+	919.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10896.0	NM_198112	239790.0	Mm.390880	NM_198112	ENSMUSG00000052276	Ostn	Ostc	osteocrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84348283-4	chr3	84347768	84348768	+	919.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31653.0	NR_040752	75309.0	Mm.159497	NR_040752	ENSMUSG00000104004	4930565D16Rik	-	RIKEN cDNA 4930565D16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104410473-3	chr9	104409990	104410990	+	919.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15623.0	NR_035516	100316725.0		NR_035516	ENSMUSG00000089406	Mir2136	mmu-mir-2136	microRNA 2136	ncRNA	0.0	1.0	4.0	5.0	0.5	2.5
Merged-chr4-53158100-4	chr4	53157574	53158574	+	919.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	1821.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66186266-4	chr14	66185763	66186763	+	919.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 5 of 30)	intron (NM_001162366, intron 5 of 30)	27561.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54227052-4	chr14	54226569	54227569	+	919.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26860.0	NM_001113358	13135.0	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.5	0.0	3.5	0.0	6.0	1.5
Merged-chr12-8942048-6	chr12	8941550	8942550	+	919.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5879.0	NM_010770	17182.0	Mm.42226	NM_010770	ENSMUSG00000020583	Matn3	AV009181	matrilin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3482267-4	chr4	3481761	3482761	+	919.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54829.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	0.0	5.5	1.0	4.5	15.0	2.5
Merged-chr3-131965652-3	chr3	131965154	131966154	+	919.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119638.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-62342992-5	chr14	62342579	62343579	+	919.82666	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026001, intron 1 of 10)	intron (NM_026001, intron 1 of 10)	11011.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	24.5	23.5	49.5	18.5	57.0	40.5
Merged-chr11-97279503-6	chr11	97279044	97280044	+	919.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008942, intron 1 of 22)	intron (NM_008942, intron 1 of 22)	1032.0	NM_008942	19155.0	Mm.29824	NM_008942	ENSMUSG00000001441	Npepps	AAP-S|MP100|Psa|R74825|goku	aminopeptidase puromycin sensitive	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54381312-2	chr14	54380862	54381862	+	919.7999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	20521.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	1.5	0.0	6.0	6.0	14.0	5.5
Merged-chr17-31073507-4	chr17	31073002	31074002	+	919.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	15808.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	125.0	191.0	140.0	129.0	206.0	165.5
Merged-chr6-125030677-4	chr6	125030126	125031126	+	919.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130997, intron 1 of 3)	intron (NR_130997, intron 1 of 3)	-9222.0	NM_133345	28019.0	Mm.262547	NM_133345	ENSMUSG00000030330	Ing4	D6Wsu147e|D6Xrf92|p29ING4	inhibitor of growth family, member 4	protein-coding	2.0	13.0	4.5	3.0	8.5	3.0
Merged-chr18-80468599-4	chr18	80468076	80469076	+	919.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 1 of 12)	intron (NM_026295, intron 1 of 12)	1091.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	16.0	44.0	29.5	19.5	39.5	22.0
Merged-chr16-91352260-4	chr16	91351726	91352726	+	919.787476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20557.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	2.5	1.0	3.0	1.5	1.0	4.5
Merged-chr10-84366055-3	chr10	84365663	84366663	+	919.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74308.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89300037-3	chr6	89299486	89300486	+	919.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14261.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-124741885-4	chr4	124741424	124742424	+	919.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126474)	promoter-TSS (NR_126474)	74.0	NR_126474	16330.0	Mm.296202	NM_008385	ENSMUSG00000028894	Inpp5b	5PTase|AW260155|INPP5P	inositol polyphosphate-5-phosphatase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39449306-4	chr10	39448806	39449806	+	919.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	79507.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96035572-3	chr9	96035073	96036073	+	919.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311130, intron 33 of 41)	intron (NM_001311130, intron 33 of 41)	80813.0	NM_011916	24127.0	Mm.291179	NM_011916	ENSMUSG00000032410	Xrn1	Dhm2|exo|mXrn1	5'-3' exoribonuclease 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72220878-2	chr8	72220332	72221332	+	919.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_026455, intron 2 of 3)	intron (NM_026455, intron 2 of 3)	1102.0	NM_026455	67922.0	Mm.28327	NM_026455	ENSMUSG00000003039	Fam32a	2510049I19Rik|AW822030|OTAG-12|Otag12	family with sequence similarity 32, member A	protein-coding	11.5	23.0	24.5	7.0	33.0	31.0
Merged-chr12-100684714-4	chr12	100684199	100685199	+	919.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153587, intron 1 of 17)	L1MB2|LINE|L1	40421.0	NM_001330702	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32319454-4	chr17	32318951	32319951	+	919.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357760, intron 1 of 11)	intron (NM_001357760, intron 1 of 11)	1787.0	NM_001357760	56399.0	Mm.328945	NM_019774	ENSMUSG00000024045	Akap8	1200016A02Rik|AA673585|AKAP-8|AKAP95|AU015639	A kinase (PRKA) anchor protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157070483-4	chr2	157069879	157070879	+	919.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	8886.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125599775-4	chr7	125599291	125600291	+	919.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3638.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	9.5	39.0	21.5	4.0	25.0	23.0
Merged-chr6-115534797-3	chr6	115534262	115535262	+	919.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9942.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135614794-4	chr5	135614210	135615210	+	919.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17944.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	0.0	0.0	0.0	0.0	2.0	3.0
Merged-chr11-70239093-6	chr11	70238534	70239534	+	919.7222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173742, intron 1 of 2)	intron (NM_173742, intron 1 of 2)	818.0	NM_173742	52898.0	Mm.29852	NM_173742	ENSMUSG00000093989	Rnasek	2310033H11Rik|AA571397|D11Bwg0434e	ribonuclease, RNase K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-71785176-3	chr7	71784667	71785667	+	919.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124528.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	5.5	1.5	1.0	5.0	3.0	4.0
Merged-chr5-110284732-4	chr5	110284215	110285215	+	919.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008993, intron 1 of 4)	MTE2b|LTR|ERVL-MaLR	1453.0	NM_008993	19301.0	Mm.21853	NM_008993	ENSMUSG00000029499	Pxmp2	22kDa|PMP22	peroxisomal membrane protein 2	protein-coding	0.0	3.5	1.5	0.0	0.0	0.0
Merged-chr5-73257315-4	chr5	73256851	73257851	+	919.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028194)	promoter-TSS (NM_028194)	-733.0	NM_028194	72313.0	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	36.5	88.5	54.5	33.5	42.5	52.5
Merged-chr1-149939478-3	chr1	149938983	149939983	+	919.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	-17044.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64591898-3	chr17	64591409	64592409	+	919.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9740.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-181237505-3	chr1	181236998	181237998	+	919.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25520.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64077723-3	chr7	64077268	64078268	+	919.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76067.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29912905-3	chr6	29912386	29913386	+	919.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_021414)	TTS (NM_021414)	-4127.0	NM_177204	320609.0	Mm.56097	NM_177204	ENSMUSG00000039629	Strip2	D330017J20Rik|Fam40b	striatin interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96082941-3	chr3	96082441	96083441	+	919.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21586.0	NM_001025613	229603.0	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	0.0	0.0	3.0	0.0	0.0	2.0
Merged-chr1-171688603-2	chr1	171688103	171689103	+	919.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_007649, intron 1 of 3)	MER20|DNA|hAT-Charlie	6611.0	NM_001360767	12506.0	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-90250487-3	chr11	90249996	90250996	+	919.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026178, intron 1 of 6)	intron (NM_026178, intron 1 of 6)	1020.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-45917041-4	chr5	45916547	45917547	+	919.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	15362.0	NR_110478	78106.0	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA	14.0	24.0	24.0	11.0	21.0	8.0
Merged-chr13-113800420-4	chr13	113799919	113800919	+	919.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	5911.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-86884324-4	chr10	86883673	86884673	+	919.62854	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 43 of 68)	intron (NM_138673, intron 43 of 68)	105168.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32827184-4	chr12	32826681	32827681	+	919.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045032)	TTS (NR_045032)	3065.0	NR_045032	100504486.0	Mm.440246	NR_045032		Gdap10	Gdap-ps	ganglioside-induced differentiation-associated-protein 10	ncRNA	6.0	31.5	11.0	7.5	25.0	10.0
Merged-chr10-99085088-4	chr10	99084589	99085589	+	919.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21993.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141867702-4	chr4	141867201	141868201	+	919.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	7219.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	20.5	31.0	14.5	7.0	12.0	22.5
Merged-chr1-144295127-4	chr1	144294614	144295614	+	919.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46010.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73620421-2	chr7	73619921	73620921	+	919.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-62026.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33747665-4	chr16	33747140	33748140	+	919.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 10 of 14)	L1MA6|LINE|L1	-46397.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20424982-4	chr16	20424500	20425500	+	919.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176839, intron 1 of 6)	intron (NM_176839, intron 1 of 6)	1394.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96890746-2	chr11	96890257	96891257	+	919.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA7|LINE|L1	25757.0	NM_001308183	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	12.0	23.0	31.5	19.5	46.5	31.0
Merged-chr2-116923412-3	chr2	116922908	116923908	+	919.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23256.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	5.0	1.5	4.0	0.0	0.0	1.0
Merged-chr14-32077223-4	chr14	32076768	32077768	+	919.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8018.0	NR_104305	105638.0	Mm.2519	NM_172254	ENSMUSG00000021905	Dph3	DELGIP1|DelgipP1|Desr1|KTI11|Zcsl2	diphthamine biosynthesis 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145247304-4	chr6	145246797	145247797	+	919.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021284, intron 1 of 4)	intron (NM_021284, intron 1 of 4)	2934.0	NM_021284	16653.0	Mm.383182	NM_021284	ENSMUSG00000030265	Kras	AI929937|K-Ras|K-Ras 2|K-ras|Ki-ras|Kras-2|Kras2|c-K-ras|c-Ki-ras|p21B|ras	Kirsten rat sarcoma viral oncogene homolog	protein-coding	24.5	46.0	19.0	16.0	18.5	4.0
Merged-chr7-89236300-4	chr7	89235799	89236799	+	919.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 5 of 14)	intron (NM_001360746, intron 5 of 14)	102488.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122383471-4	chr7	122382974	122383974	+	919.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	MTEa|LTR|ERVL-MaLR	94349.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12178463-3	chr18	12177955	12178955	+	919.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029623, intron 5 of 19)	intron (NM_029623, intron 5 of 19)	9725.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	6.5	7.0	11.0	3.5	2.0	7.0
Merged-chr8-83081259-3	chr8	83080774	83081774	+	919.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 6 of 6)	intron (NM_177378, intron 6 of 6)	-84078.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	29.5	74.0	60.5	19.0	44.5	27.5
Merged-chr6-124415930-4	chr6	124415434	124416434	+	919.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175933)	promoter-TSS (NM_175933)	-79.0	NM_001360570	19305.0	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1-BP|PTS1R|PXR1P|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166430140-4	chr2	166429654	166430654	+	919.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17297.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-144898228-5	chr4	144897641	144898641	+	919.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	5004.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46151692-6	chr8	46151203	46152203	+	919.5277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-11948.0	NM_025747	66756.0	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430	cilia and flagella associated protein 97	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-3895892-5	chr13	3895433	3896433	+	919.5200199999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019671, intron 3 of 11)	intron (NM_019671, intron 3 of 11)	-2352.0	NM_001047159	56349.0	Mm.22261	NM_019671	ENSMUSG00000021215	Net1	Net1a|mNET1	neuroepithelial cell transforming gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126057993-4	chr4	126057531	126058531	+	919.5125119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356446)	promoter-TSS (NM_001356446)	-534.0	NM_001356446	230751.0	Mm.38907	NM_172701	ENSMUSG00000042616	Oscp1	1810007P19Rik|5730415O04|6030436A01Rik	organic solute carrier partner 1	protein-coding	6.5	17.0	20.5	12.0	18.0	4.5
Merged-chr15-62165279-4	chr15	62164780	62165780	+	919.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003368, intron 4 of 8)	intron (NR_003368, intron 4 of 8)	54171.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	6.0	19.5	17.0	6.0	21.5	18.0
Merged-chr7-80185488-2	chr7	80184988	80185988	+	919.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1353.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57642473-2	chr9	57641973	57642973	+	919.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 2 of 14)	intron (NM_001304761, intron 2 of 14)	3180.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-40949918-4	chr14	40949430	40950430	+	919.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	L1MC4|LINE|L1	-1721.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128991893-2	chr4	128991393	128992393	+	919.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1331.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65668985-2	chr18	65668407	65669407	+	919.5	f0_balb.idr|f1_balb.idr	intron (NM_001361052, intron 6 of 8)	ID4|SINE|ID	-29361.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	7.5	3.0	14.0	39.0	34.5	41.5
Merged-chr17-17857938-2	chr17	17857441	17858441	+	919.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-2753.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	5.0	4.0	0.0	5.0	0.0	1.0
Merged-chr6-124856690-2	chr6	124856190	124857190	+	919.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013534, intron 1 of 14)	intron (NM_013534, intron 1 of 14)	997.0	NM_013534	14789.0	Mm.35708	NM_013534	ENSMUSG00000023191	P3h3	BC016431|Grcb|Leprel2	prolyl 3-hydroxylase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43931113-3	chr19	43930597	43931597	+	919.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028029, intron 1 of 15)	intron (NM_028029, intron 1 of 15)	9101.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	9.0	55.5	38.5	19.5	23.0	24.0
Merged-chr5-28043141-2	chr5	28042641	28043641	+	919.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28271.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	0.0	1.0	7.5	0.0	6.0	0.0
Merged-chr5-136988278-2	chr5	136987778	136988778	+	919.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027318)	promoter-TSS (NM_027318)	-319.0	NM_027318	70103.0	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	38.0	62.5	50.5	43.5	59.0	62.0
Merged-chr8-105983638-4	chr8	105983142	105984142	+	919.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4223.0	NM_027960	71854.0	Mm.173395	NM_027960	ENSMUSG00000031898	Dpep3	1700018F16Rik|AI507039|MBD-3|MLZ-136	dipeptidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139790691-2	chr5	139790191	139791191	+	919.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010757)	promoter-TSS (NM_010757)	-845.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	14.5	50.5	23.0	5.5	17.0	26.0
Merged-chr2-153275803-2	chr2	153275303	153276303	+	919.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-15613.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64358189-2	chr7	64357689	64358689	+	919.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177893, intron 8 of 13)	L1MB8|LINE|L1	15906.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126253892-2	chr4	126253392	126254392	+	919.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145970, intron 1 of 16)	intron (NM_001145970, intron 1 of 16)	2427.0	NM_144941	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	13.0	19.0	10.5	8.0	30.0	31.0
Merged-chr9-32501598-4	chr9	32501087	32502087	+	919.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	39865.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100739038-2	chr11	100738538	100739538	+	919.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024456)	promoter-TSS (NM_024456)	-823.0	NM_001305003	19345.0	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-101722434-4	chr12	101721949	101722949	+	919.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3926.0	NM_001082976	74413.0	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding	9.5	6.5	1.0	5.5	1.5	0.0
Merged-chr11-120094334-2	chr11	120093834	120094834	+	919.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183137, intron 7 of 12)	intron (NM_183137, intron 7 of 12)	4397.0	NM_183137	78777.0	Mm.23672	NM_183137	ENSMUSG00000025377	Tepsin	2410002I01Rik|Enthd2	TEPSIN, adaptor related protein complex 4 accessory protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3767500-2	chr4	3767000	3768000	+	919.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	52536.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	14.5	14.0	15.0	0.0	33.5	10.5
Merged-chr14-16364201-2	chr14	16363701	16364701	+	919.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1005.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	6.5	53.5	23.0	14.5	75.5	30.5
Merged-chr1-86007984-4	chr1	86007479	86008479	+	919.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13963.0	NM_001122732	70060.0	Mm.196313	NM_027029	ENSMUSG00000026226	Spata3	1700011N12Rik|1700029H01Rik|4930424D10Rik|Mtsarg1|Tsarg1	spermatogenesis associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109995837-2	chr11	109995337	109996337	+	919.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013851)	promoter-TSS (NM_013851)	-21.0	NM_013851	27404.0	Mm.341004	NM_013851	ENSMUSG00000020620	Abca8b	Abca8	ATP-binding cassette, sub-family A (ABC1), member 8b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84716483-2	chr2	84715983	84716983	+	919.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1319.0	NM_144887	228136.0	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	1.0	1.0	2.5	3.0	4.0	6.5
Merged-chr7-126370154-2	chr7	126369654	126370654	+	919.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010689)	promoter-TSS (NM_010689)	-586.0	NM_010689	16797.0	Mm.10280	NM_010689	ENSMUSG00000030742	Lat	p36-38|pp36	linker for activation of T cells	protein-coding	0.0	1.0	0.5	0.0	0.0	0.0
Merged-chr10-67061724-2	chr10	67061224	67062224	+	919.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 2 of 7)	L1MB5|LINE|L1	35264.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-66447626-2	chr3	66447126	66448126	+	919.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-150789.0	NM_145820	72789.0	Mm.443526	NM_028357	ENSMUSG00000027831	Veph1	2810471M23Rik|Veph	ventricular zone expressed PH domain-containing 1	protein-coding	3.0	0.0	0.0	0.0	2.5	0.0
Merged-chr14-112593156-2	chr14	112592656	112593656	+	919.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	918041.0	NM_198865	75409.0	Mm.235097	NM_029273	ENSMUSG00000033214	Slitrk5	2610019D03Rik	SLIT and NTRK-like family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45179809-4	chr14	45179303	45180303	+	919.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310534, intron 7 of 20)	intron (NM_001310534, intron 7 of 20)	39622.0	NM_172597	70561.0	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-35219719-4	chr4	35219210	35220210	+	919.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081343, intron 1 of 10)	intron (NM_001081343, intron 1 of 10)	6170.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-13170154-3	chr2	13169641	13170641	+	919.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009105, intron 7 of 8)	intron (NM_009105, intron 7 of 8)	101274.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47135859-6	chr19	47135349	47136349	+	919.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133746, exon 2 of 3)	exon (NM_133746, exon 2 of 3)	2445.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr1-165132594-3	chr1	165132028	165133028	+	919.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28245.0	NM_032005	83993.0	Mm.190649	NM_032005	ENSMUSG00000026572	Tbx19	AU019250|D1Ertd754e|Tpit	T-box 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25982357-4	chr8	25981846	25982846	+	919.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029037, exon 5 of 5)	3' UTR (NM_029037, exon 5 of 5)	-5602.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	8.0	26.0	26.0	11.0	23.0	23.0
Merged-chr3-69223783-3	chr3	69223256	69224256	+	919.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027843)	TTS (NM_027843)	1337.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	4.5	13.0	26.0	14.0	14.5	17.5
Merged-chr14-16256369-4	chr14	16255862	16256862	+	919.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021504, intron 2 of 11)	MTEb|LTR|ERVL-MaLR	-6554.0	NM_027695	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45558095-4	chr17	45557578	45558578	+	919.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008690, intron 1 of 5)	intron (NM_008690, intron 1 of 5)	2378.0	NM_001304956	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	9.0	25.5	11.5	5.5	12.5	8.5
Merged-chr11-69923212-2	chr11	69922737	69923737	+	919.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1279.0	NM_001166593	276770.0	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105409293-4	chr5	105408785	105409785	+	919.408325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-6490.0	NM_001033550	433926.0	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	2210408K08Rik|R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	5.0	3.5	5.5	9.0	4.0	9.5
Merged-chr11-19018212-4	chr11	19017730	19018730	+	919.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001193271, exon 1 of 13)	exon (NM_001193271, exon 1 of 13)	739.0	NM_001193271	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67998201-3	chr10	67997717	67998717	+	919.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359319, intron 3 of 11)	intron (NM_001359319, intron 3 of 11)	18647.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	6.5	0.0	0.0	0.0	0.0	1.0
Merged-chr1-171815958-4	chr1	171815451	171816451	+	919.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-23746.0	NM_001252472	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	7.5	8.0	15.0	27.5	38.5	62.5
Merged-chr19-45016768-4	chr19	45016150	45017150	+	919.380554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145503, intron 1 of 4)	intron (NM_145503, intron 1 of 4)	1440.0	NM_001130525	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	0.5	3.0	8.5	1.5	7.0	6.0
Merged-chr4-120033155-4	chr4	120032646	120033646	+	919.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 2 of 8)	CpG	-128060.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56849013-4	chr17	56848552	56849552	+	919.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039114, intron 10 of 14)	B1_Mus1|SINE|Alu	-18044.0	NM_027787	19725.0	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95216179-4	chr4	95215697	95216697	+	919.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4_19-int|LTR|ERVK	-163975.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58126770-4	chr11	58126216	58127216	+	919.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166669, intron 24 of 27)	intron (NM_001166669, intron 24 of 27)	22487.0	NM_001356477	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	28.0	45.5	29.0	77.5	132.0	130.0
Merged-chr4-148945825-4	chr4	148945325	148946325	+	919.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027195)	TTS (NM_027195)	6497.0	NR_154553	108168987.0	Mm.393596	NR_154553		Gm13205	AA408865	predicted gene 13205	ncRNA	5.0	3.0	2.0	5.0	24.0	9.0
Merged-chr6-82048150-3	chr6	82047651	82048651	+	919.355591	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145570, intron 1 of 2)	intron (NM_145570, intron 1 of 2)	6523.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	8.5	12.0	5.5	37.0	17.5	32.5
Merged-chr5-96923651-4	chr5	96923062	96924062	+	919.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131152, intron 2 of 2)	intron (NR_131152, intron 2 of 2)	2290.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	6.5	9.0	9.5	9.0	15.5	9.0
Merged-chr2-75965199-4	chr2	75964710	75965710	+	919.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12969.0	NM_001081228	620631.0	Mm.389286	NM_001081228	ENSMUSG00000075272	Ttc30a2	-	tetratricopeptide repeat domain 30A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-83815820-4	chr18	83815328	83816328	+	919.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	270734.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-55250611-3	chr9	55250098	55251098	+	919.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	intron (NM_032002, intron 3 of 7)	33027.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12004925-3	chr19	12004453	12005453	+	919.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER34A1|LTR|ERV1	31787.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69060452-6	chr11	69059952	69060952	+	919.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028005, exon 1 of 1)	exon (NM_028005, exon 1 of 1)	677.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8429979-3	chr12	8429454	8430454	+	919.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70055.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	4.0	0.0	0.0	0.0	0.0	0.5
Merged-chr9-48548451-4	chr9	48547953	48548953	+	919.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC2|LINE|L1	53110.0	NM_001004191	434402.0	Mm.386950	NM_001004191	ENSMUSG00000042293	Gm5617	EG434402	predicted gene 5617	protein-coding	12.5	48.0	39.5	14.5	79.5	31.0
Merged-chr15-63648492-3	chr15	63647992	63648992	+	919.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	160247.0	NM_031378	83492.0	Mm.335619	NM_031378	ENSMUSG00000079025	Gsdmc	Gsdmc1|Mlze	gasdermin C	protein-coding	2.0	12.0	4.5	16.5	8.5	2.0
Merged-chr11-101986121-4	chr11	101985506	101986506	+	919.3020630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1050.0	NM_029287	75437.0	Mm.108632	NM_029287	ENSMUSG00000010841	1700006E09Rik	Cfap97d1	RIKEN cDNA 1700006E09 gene	protein-coding	3.0	11.0	4.0	5.5	6.0	5.0
Merged-chr6-39507623-4	chr6	39507111	39508111	+	919.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172477, intron 3 of 18)	intron (NM_172477, intron 3 of 18)	50223.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156037395-4	chr1	156036893	156037893	+	919.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160018)	promoter-TSS (NM_001160018)	-913.0	NM_001160018	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	108.5	241.0	170.5	73.0	257.5	150.5
Merged-chr10-78600110-4	chr10	78599614	78600614	+	919.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	-8150.0	NM_027875	71709.0	Mm.86439	NM_027875	ENSMUSG00000032714	Syde1	1200008N06Rik|BB043000|mSYD1A	synapse defective 1, Rho GTPase, homolog 1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96102216-4	chr3	96101740	96102740	+	919.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2287.0	NM_001025613	229603.0	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	1.0	14.0	12.5	1.0	11.0	10.5
Merged-chr4-8857649-3	chr4	8857122	8858122	+	919.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 31 of 36)	intron (NM_001355382, intron 31 of 36)	106298.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	1.5	0.0	0.0	0.0	0.0	0.5
Merged-chr8-120711373-4	chr8	120710854	120711854	+	919.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC|LINE|L1	-25004.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55594311-2	chr14	55593811	55594811	+	919.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_194346, exon 6 of 21)	exon (NM_194346, exon 6 of 21)	2569.0	NM_194346	268749.0	Mm.23748	NM_194346	ENSMUSG00000047098	Rnf31	AL033293|BC031509|Flj10111|HOIP|Paul|mFLJ00217	ring finger protein 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108226659-4	chr3	108226160	108227160	+	919.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008596)	promoter-TSS (NM_008596)	-61.0	NM_008596	17306.0	Mm.316885	NM_008596	ENSMUSG00000027887	Sypl2	AI552439|Mg29	synaptophysin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41811199-2	chr10	41810699	41811699	+	919.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001162908, exon 1 of 10)	exon (NM_001162908, exon 1 of 10)	625.0	NM_001162908	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122604239-4	chr10	122603737	122604737	+	919.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34346.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	3.0	6.0	2.5	1.0	3.0	2.0
Merged-chr4-47398422-4	chr4	47397900	47398900	+	919.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312869, intron 3 of 7)	intron (NM_001312869, intron 3 of 7)	12184.0	NM_001312869	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35986531-4	chr16	35986031	35987031	+	919.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008465, intron 1 of 13)	intron (NM_008465, intron 1 of 13)	3168.0	NM_008465	16646.0	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70444890-2	chr11	70444390	70445390	+	919.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6635.0	NR_106064	102465670.0		NR_106064	ENSMUSG00000099109	Mir7115	Gm27902|mmu-mir-7115	microRNA 7115	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62820786-2	chr11	62820286	62821286	+	919.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_053169, exon 1 of 6)	exon (NM_053169, exon 1 of 6)	533.0	NM_053169	94092.0	Mm.117087	NM_053169	ENSMUSG00000047821	Trim16	9130006M08Rik|AI482483|EBBP	tripartite motif-containing 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-51492055-4	chr1	51491628	51492628	+	919.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13729.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51312162-4	chr13	51311664	51312664	+	919.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96454.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103803166-3	chr3	103802712	103803712	+	919.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040412)	promoter-TSS (NR_040412)	83.0	NR_040412	100503157.0	Mm.445554	NR_040412	ENSMUSG00000084997	Gm15471	-	predicted gene 15471	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-72467720-3	chr9	72467209	72468209	+	919.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009359, intron 10 of 11)	intron (NM_009359, intron 10 of 11)	24250.0	NM_009359	21778.0	Mm.14485	NM_009359	ENSMUSG00000090626	Tex9	Gm19407|tsec-1	testis expressed gene 9	protein-coding	13.5	38.5	28.5	4.0	7.0	9.5
Merged-chr7-75681284-4	chr7	75680776	75681776	+	919.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 12 of 36)	intron (NM_029332, intron 12 of 36)	-167062.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-29989760-4	chr16	29989244	29990244	+	919.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10620.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32085760-4	chr5	32085270	32086270	+	919.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50702.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.0	4.5	2.0	0.0	0.0	0.0
Merged-chr16-4757668-4	chr16	4757164	4758164	+	919.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357050, intron 1 of 5)	intron (NM_001357050, intron 1 of 5)	718.0	NM_001357050	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72552879-3	chr5	72552336	72553336	+	919.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153351, intron 3 of 21)	intron (NR_153351, intron 3 of 21)	6809.0	NM_001359837	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-106668377-4	chr14	106667876	106668876	+	919.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-181856.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	6.5	28.0	12.0	20.0	17.0	16.0
Merged-chr17-33823576-2	chr17	33823076	33824076	+	919.1666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_103515)	promoter-TSS (NR_103515)	986.0	NM_016844	54127.0	Mm.352374	NM_016844	ENSMUSG00000067288	Rps28	-	ribosomal protein S28	protein-coding	3.0	7.5	1.0	0.0	0.0	0.5
Merged-chr18-34119193-4	chr18	34118693	34119693	+	919.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101791.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	10.0	38.0	23.0	2.5	13.0	13.0
Merged-chr17-40654016-2	chr17	40653516	40654516	+	919.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	21941.0	NM_001251916	100126766.0	Mm.471591	NM_001251916	ENSMUSG00000093957	Esp3	Gm21945	exocrine gland secreted peptide 3	protein-coding	1.0	9.0	1.5	1.0	9.5	3.5
Merged-chr2-53083452-2	chr2	53082952	53083952	+	919.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 9 of 26)	B2_Mm2|SINE|B2	107735.0	NM_018785	56194.0	Mm.257474	NM_018785	ENSMUSG00000061136	Prpf40a	2810012K09Rik|FBP-11|FBP11|Fnbp11|Fnbp3	pre-mRNA processing factor 40A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180812626-4	chr1	180812123	180813123	+	919.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008210, intron 1 of 3)	CpG	982.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75462768-4	chr18	75462269	75463269	+	919.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 10 of 11)	intron (NM_201354, intron 10 of 11)	-51876.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87960232-4	chr1	87959751	87960751	+	919.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033291, intron 19 of 27)	intron (NM_001033291, intron 19 of 27)	48300.0	NM_001198573	227334.0	Mm.80484	NM_001033291	ENSMUSG00000005501	Usp40	B230215L03Rik|C730029K03	ubiquitin specific peptidase 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44732727-4	chr13	44732238	44733238	+	919.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205043, intron 1 of 17)	intron (NM_001205043, intron 1 of 17)	1467.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66005490-4	chr5	66004981	66005981	+	919.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1196.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87623021-3	chr1	87622510	87623510	+	919.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	2698.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118675928-3	chr9	118675453	118676453	+	919.111084	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 11 of 27)	RMER1B|Other|Other	-35739.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	25.0	103.5	60.0	17.5	22.5	47.5
Merged-chr1-192081224-3	chr1	192080720	192081720	+	919.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011633, intron 1 of 9)	intron (NM_011633, intron 1 of 9)	11379.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99364295-3	chr5	99363807	99364807	+	919.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-111380.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	30.5	46.5	49.5	27.0	49.0	52.5
Merged-chr11-47276871-4	chr11	47276383	47277383	+	919.087524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 2 of 7)	intron (NM_011891, intron 2 of 7)	102419.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75190497-2	chr14	75189997	75190997	+	919.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	-51790.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104077197-4	chr8	104076713	104077713	+	919.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24412.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-72940934-4	chr11	72940396	72941396	+	919.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-20273.0	NM_016745	53313.0	Mm.6306	NM_016745	ENSMUSG00000020788	Atp2a3	SERCA3b|Serca3	ATPase, Ca++ transporting, ubiquitous	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-44014938-4	chr4	44014447	44015447	+	919.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080384, intron 2 of 5)	intron (NM_001080384, intron 2 of 5)	2297.0	NM_001290470	12757.0	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37508174-4	chr19	37507673	37508673	+	919.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42245.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	2.0	7.5	3.0	2.0	6.5	6.5
Merged-chr1-64615088-4	chr1	64614623	64615623	+	919.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025964, exon 2 of 3)	exon (NM_025964, exon 2 of 3)	2045.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47647118-4	chr14	47646621	47647621	+	919.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2190.0	NM_001347527	16709.0	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	37.0	113.0	76.0	34.0	38.5	44.5
Merged-chr11-69067063-3	chr11	69066580	69067580	+	919.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3729.0	NM_025838	66910.0	Mm.33964	NM_025838	ENSMUSG00000020895	Tmem107	1110004B13Rik|2810049P21Rik	transmembrane protein 107	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-74213962-3	chr18	74213456	74214456	+	919.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-2256.0	NM_028868	74322.0	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	13.5	24.0	14.5	20.0	20.0	26.5
Merged-chr1-191850334-3	chr1	191849842	191850842	+	919.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28869.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	51.0	154.5	105.0	51.5	133.0	110.0
Merged-chr3-95142818-4	chr3	95142344	95143344	+	919.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027206)	promoter-TSS (NM_027206)	-484.0	NM_027206	69769.0	Mm.34368	NM_027206	ENSMUSG00000013707	Tnfaip8l2	1810019A08Rik|AW610835|TIPE2	tumor necrosis factor, alpha-induced protein 8-like 2	protein-coding	23.0	39.5	8.5	11.0	35.0	19.5
Merged-chr4-48591064-4	chr4	48590571	48591571	+	919.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021436, intron 1 of 9)	Tigger13a|DNA|TcMar-Tigger	5897.0	NM_021436	230157.0	Mm.422686	NM_021436	ENSMUSG00000028347	Tmeff1	A830033E11|M7365|TR-1|Tr1	transmembrane protein with EGF-like and two follistatin-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-31148186-2	chr8	31147686	31148686	+	919.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-2130.0	NM_144927	234138.0	Mm.349800	NM_144927	ENSMUSG00000031577	Tti2	-	TELO2 interacting protein 2	protein-coding	0.0	1.5	1.0	0.0	0.0	0.0
Merged-chr2-167342190-2	chr2	167341690	167342690	+	919.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	6988.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136904448-1	chr6	136903948	136904948	+	919.0	f0_c57.idr	Intergenic	Intergenic	17732.0	NM_026983	69187.0	Mm.33692	NM_026983	ENSMUSG00000030219	Erp27	1810033M07Rik|1810047B09Rik	endoplasmic reticulum protein 27	protein-coding	6.0	6.0	7.0	0.0	1.0	0.0
Merged-chr3-3829095-2	chr3	3828595	3829595	+	919.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	321065.0	NM_013920	30942.0	Mm.330897	NM_013920	ENSMUSG00000017688	Hnf4g	NR2A2	hepatocyte nuclear factor 4, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45629292-3	chr17	45628795	45629795	+	919.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001013767)	TTS (NM_001013767)	-27193.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73029803-2	chr17	73029302	73030302	+	919.0	f0_balb.idr|f1_balb.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-78183.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	4.5	9.0	3.5	2.0	22.5	15.5
Merged-chr11-115073386-2	chr11	115072886	115073886	+	919.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11347.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129812201-4	chr4	129811674	129812674	+	919.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-8305.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	71.5	232.0	169.0	77.5	190.0	160.5
Merged-chr7-127109333-2	chr7	127108833	127109833	+	919.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133686, intron 1 of 3)	intron (NM_133686, intron 1 of 3)	12696.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115562676-1	chr5	115562176	115563176	+	919.0	f1_c57bl6.idr	intron (NM_007475, intron 6 of 6)	intron (NM_007475, intron 6 of 6)	-2587.0	NM_172719	231659.0	Mm.153014	NM_172719	ENSMUSG00000041638	Gcn1l1	4932409G22|AL022764|G431004K08Rik|GCN1L|Gcn1|mKIAA0219	GCN1 general control of amino-acid synthesis 1-like 1 (yeast)	protein-coding	4.0	7.5	7.0	11.5	6.5	5.5
Merged-chr14-55698287-3	chr14	55697759	55698759	+	919.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14829.0	NM_019984	21816.0	Mm.41964	NM_019984	ENSMUSG00000022218	Tgm1	2310004J08Rik|Tgase1	transglutaminase 1, K polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123045066-2	chr8	123044590	123045590	+	919.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045268)	TTS (NR_045268)	2515.0	NR_045268	100503178.0	Mm.294938	NR_045268	ENSMUSG00000099881	2810013P06Rik	-	RIKEN cDNA 2810013P06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43431879-4	chr4	43431346	43432346	+	919.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2712.0	NM_001162381	329831.0	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	5.5	0.0	2.5	9.0	0.0	0.0
Merged-chr2-166186189-2	chr2	166185689	166186689	+	919.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-30506.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120775880-1	chr5	120775380	120776380	+	919.0	f0_balb.idr	intron (NM_145226, intron 1 of 15)	RLTR11A|LTR|ERVK	1779.0	NM_145226	246727.0	Mm.204887	NM_145226	ENSMUSG00000032661	Oas3	Oasl10	2'-5' oligoadenylate synthetase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5392608-4	chr2	5392109	5393109	+	919.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030601, intron 1 of 1)	intron (NR_030601, intron 1 of 1)	13219.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121582658-2	chr10	121582067	121583067	+	919.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019786, intron 2 of 20)	B3A|SINE|B2	4227.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	6.5	29.5	16.0	13.5	15.0	34.5
Merged-chr8-71614442-1	chr8	71613942	71614942	+	919.0	f1_balb.idr	intron (NM_146211, intron 3 of 11)	intron (NM_146211, intron 3 of 11)	3418.0	NM_146211	234407.0	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	13.5	47.0	60.5	29.5	35.5	25.5
Merged-chr4-102581661-1	chr4	102581161	102582161	+	919.0	f1_balb.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	-5897.0	NM_001177982	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.0	13.0	6.0	0.0	0.0	5.5
Merged-chr2-59336724-3	chr2	59336224	59337224	+	919.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 12 of 20)	intron (NM_175464, intron 12 of 20)	49958.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45129718-3	chr7	45129259	45130259	+	919.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1014.0	NM_009438	22121.0	Mm.180458	NM_009438	ENSMUSG00000074129	Rpl13a	1810026N22Rik|Tstap198-7|tum-antigen	ribosomal protein L13A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79210633-1	chr3	79210133	79211133	+	919.0	f1_balb.idr	Intergenic	Intergenic	-2286.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	0.0	3.0	5.0	5.0	7.0	0.0
Merged-chr13-49300842-3	chr13	49300345	49301345	+	919.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 1 of 17)	intron (NM_015759, intron 1 of 17)	8363.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152832604-2	chr2	152832104	152833104	+	919.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009743)	promoter-TSS (NM_009743)	-876.0	NM_009743	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0.0	4.0	0.0	0.0	7.0	0.5
Merged-chr4-109431083-3	chr4	109430595	109431595	+	919.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145948, intron 9 of 17)	intron (NM_001145948, intron 9 of 17)	15448.0	NM_001145948	230603.0	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75304007-2	chr10	75303507	75304507	+	919.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153406, intron 13 of 15)	intron (NM_153406, intron 13 of 15)	-12870.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103547332-3	chr2	103546832	103547832	+	919.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18978.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	0.0	0.0	0.5	2.0	0.0	0.5
Merged-chr4-53072753-2	chr4	53072253	53073253	+	919.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 24 of 49)	intron (NM_013454, intron 24 of 49)	60873.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-89016843-1	chr11	89016343	89017343	+	919.0	f1_c57bl6.idr	3' UTR (NM_009546, exon 9 of 9)	3' UTR (NM_009546, exon 9 of 9)	17440.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	8.5	34.5	12.0	10.0	37.5	28.5
Merged-chr4-132946698-6	chr4	132946252	132947252	+	918.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24201.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	100.5	197.5	199.0	70.0	130.0	99.0
Merged-chr11-110430004-4	chr11	110429528	110430528	+	918.9652710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	30926.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23573590-4	chr13	23573093	23574093	+	918.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178188)	promoter-TSS (NM_178188)	597.0	NM_178195	319180.0		NM_178195	ENSMUSG00000069268	Hist1h2bf	-	histone cluster 1, H2bf	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81051694-4	chr13	81051181	81052181	+	918.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015587, intron 1 of 1)	intron (NR_015587, intron 1 of 1)	87607.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40642835-7	chr9	40642305	40643305	+	918.9541019999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43159.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	13.0	1.0	16.5	13.5	6.5	17.0
Merged-chr1-143814125-4	chr1	143813612	143814612	+	918.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	36834.0	NM_019562	56207.0	Mm.261004	NM_019562	ENSMUSG00000018189	Uchl5	5830413B11Rik|Uch37	ubiquitin carboxyl-terminal esterase L5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76312497-3	chr15	76311998	76312998	+	918.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14_RN|LTR|ERV1	-5253.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	11.0	17.0	15.5	11.0	12.5	16.0
Merged-chr10-81135256-6	chr10	81134742	81135742	+	918.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GAAA)n|Simple_repeat|Simple_repeat	-1029.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90070772-4	chr16	90070277	90071277	+	918.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71460.0	NR_033476	100038709.0	Mm.484070	NR_033476		Gm10789	-	predicted gene 10789	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134478204-4	chr4	134477653	134478653	+	918.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER102c|DNA|hAT-Charlie	9833.0	NM_019641	16765.0	Mm.378957	NM_019641	ENSMUSG00000028832	Stmn1	19k|Lag|Lap18|Op18|P18|P19|Pig|Pp17|Pp18|Pp19|Pr22|Smn	stathmin 1	protein-coding	4.0	0.0	1.0	0.0	0.0	2.5
Merged-chr2-58932379-4	chr2	58931880	58932880	+	918.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 10 of 13)	intron (NM_001362394, intron 10 of 13)	177196.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64038715-4	chr5	64038207	64039207	+	918.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6266.0	NR_045384	74757.0	Mm.159329	NR_045384	ENSMUSG00000106219	5830416I19Rik	-	RIKEN cDNA 5830416I19 gene	ncRNA	0.0	0.0	0.0	0.0	1.5	0.0
Merged-chr15-64089407-4	chr15	64088877	64089877	+	918.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001276462, exon 28 of 28)	3' UTR (NM_001276462, exon 28 of 28)	-28929.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	9.0	45.0	37.5	18.5	71.5	39.5
Merged-chr1-39482397-4	chr1	39481938	39482938	+	918.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3683.0	NM_001357521	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164520964-4	chr2	164520454	164521454	+	918.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23429.0	NM_133779	78928.0	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding	7.5	2.5	1.5	1.0	12.5	3.5
Merged-chr7-139684744-3	chr7	139684216	139685216	+	918.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302546)	promoter-TSS (NM_001302546)	-901.0	NM_001302546	212124.0	Mm.425507	NM_177212	ENSMUSG00000049571	Cfap46	9330101J02Rik|E030019B06Rik|Gm170|Ttc40	cilia and flagella associated protein 46	protein-coding	4.5	8.5	5.0	0.0	3.0	2.0
Merged-chr3-10306997-4	chr3	10306490	10307490	+	918.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5807.0	NM_029310	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-58529967-4	chr10	58529439	58530439	+	918.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162956, intron 10 of 15)	ORR1F|LTR|ERVL-MaLR	32002.0	NM_001162956	76138.0	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100363512-2	chr11	100363080	100364080	+	918.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7439.0	NM_010404	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0.5	0.0	0.5	0.0	0.0	1.0
Merged-chr13-48549756-4	chr13	48549244	48550244	+	918.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11472.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-139381869-3	chr2	139381367	139382367	+	918.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112046.0	NM_001356507	228677.0	Mm.100450	NM_175467	ENSMUSG00000039092	Sptlc3	C130053K05Rik	serine palmitoyltransferase, long chain base subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-72384373-4	chr2	72383880	72384880	+	918.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 9 of 19)	intron (NM_023057, intron 9 of 19)	-91839.0	NM_025866	66953.0	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9060318-4	chr4	9059777	9060777	+	918.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-209016.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8986075-4	chr3	8985575	8986575	+	918.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	18129.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	2.5	11.0	13.5	4.0	3.5	4.0
Merged-chr2-165333371-4	chr2	165332869	165333869	+	918.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-6890.0	NM_207706	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-22059581-2	chr10	22059092	22060092	+	918.833374	f0_c57.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	8487.0	NM_053264	114671.0	Mm.288194	NM_053264	ENSMUSG00000069712	4930444G20Rik	-	RIKEN cDNA 4930444G20 gene	protein-coding	16.0	47.5	22.5	2.0	7.0	1.5
Merged-chr11-4639020-4	chr11	4638535	4639535	+	918.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029291, intron 1 of 19)	intron (NM_029291, intron 1 of 19)	1242.0	NM_029291	75452.0	Mm.439906	NM_029291	ENSMUSG00000020412	Ascc2	1700011I11Rik|2610034L15Rik|AI482016|ASC1p100|AW046480	activating signal cointegrator 1 complex subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68248832-4	chr10	68248309	68249309	+	918.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	29917.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	1.5	21.0	6.0	1.0	24.5	20.0
Merged-chr18-5834624-4	chr18	5834132	5835132	+	918.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	241985.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61529526-4	chr11	61528990	61529990	+	918.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252188, intron 7 of 10)	intron (NM_001252188, intron 7 of 10)	24346.0	NM_001330781	27078.0	Mm.261226	NM_013717	ENSMUSG00000001039	B9d1	AW045994|B9|Eppb9	B9 protein domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-92127327-3	chr6	92126884	92127884	+	918.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347342, intron 2 of 14)	intron (NM_001347342, intron 2 of 14)	34951.0	NM_001347342	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25800347-4	chr14	25799831	25800831	+	918.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31475.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11652841-4	chr16	11652358	11653358	+	918.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 16 of 20)	intron (NM_028964, intron 16 of 20)	-126844.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99640352-4	chr12	99639798	99640798	+	918.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12324.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82380269-3	chr15	82379789	82380789	+	918.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163472)	promoter-TSS (NM_001163472)	-29.0	NM_001163472	56448.0	Mm.474216	NM_019823	ENSMUSG00000061740	Cyp2d22	2D22	cytochrome P450, family 2, subfamily d, polypeptide 22	protein-coding	0.0	0.0	0.0	0.0	1.5	0.0
Merged-chr12-85659981-2	chr12	85659481	85660481	+	918.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26739.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65802511-4	chr17	65801943	65802943	+	918.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152099, intron 2 of 20)	intron (NR_152099, intron 2 of 20)	19088.0	NR_104465	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	26.5	35.0	45.0	22.5	48.5	47.0
Merged-chr1-83747638-4	chr1	83747142	83748142	+	918.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEd|LINE|L1	-339442.0	NM_001356547	77629.0	Mm.154303	NM_172430	ENSMUSG00000026163	Sphkap	4930544G21Rik|A930009L15Rik|AI852220|SKIP|mKIAA1678	SPHK1 interactor, AKAP domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19818559-4	chr7	19818037	19819037	+	918.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033601, intron 2 of 8)	intron (NM_033601, intron 2 of 8)	4218.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3125503-6	chr11	3124921	3125921	+	918.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003517, intron 1 of 6)	B1_Mus1|SINE|Alu	1400.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-31050433-4	chr9	31049935	31050935	+	918.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001115130, intron 1 of 5)	B4A|SINE|B4	19791.0	NM_172765	235132.0	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141782959-4	chr4	141782482	141783482	+	918.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172338, exon 4 of 15)	exon (NM_172338, exon 4 of 15)	7662.0	NM_172338	214063.0	Mm.39102	NM_172338	ENSMUSG00000040697	Dnajc16	2900037O03Rik|4732437J24Rik|D030060M24|mKIAA0962	DnaJ heat shock protein family (Hsp40) member C16	protein-coding	11.5	24.0	21.5	14.5	42.0	18.0
Merged-chr6-39430914-4	chr6	39430416	39431416	+	918.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	10538.0	NR_152168	621427.0	Mm.389742	NR_152168	ENSMUSG00000068601	Gm10244	Anmkrn1	predicted gene 10244	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-148945270-7	chr6	148944782	148945782	+	918.780945	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355645)	promoter-TSS (NM_001355645)	425.0	NR_144294	109163.0	Mm.440359	NM_175404		3010003L21Rik	-	RIKEN cDNA 3010003L21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30612471-6	chr13	30611941	30612941	+	918.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2602.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142441483-3	chr5	142440935	142441935	+	918.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 2 of 8)	intron (NM_199068, intron 2 of 8)	-22496.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31394149-4	chr14	31393642	31394642	+	918.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	23535.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46137370-4	chr19	46136867	46137867	+	918.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008852, exon 2 of 4)	exon (NM_008852, exon 2 of 4)	5468.0	NM_007703	12686.0	Mm.21806	NM_007703	ENSMUSG00000038754	Elovl3	CIN-2|Cig30	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90449119-2	chr2	90448663	90449663	+	918.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 17 of 23)	MLT1C|LTR|ERVL-MaLR	30011.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	2.0	2.0	7.0	5.0	5.0	7.0
Merged-chr19-42131338-4	chr19	42130858	42131858	+	918.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2365.0	NM_027106	69534.0	Mm.30060	NM_027106	ENSMUSG00000018821	Avpi1	2310008N12Rik|AA410041|VIT32|esu|mVIT32	arginine vasopressin-induced 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167252711-2	chr2	167252211	167253211	+	918.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12174.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173934636-4	chr1	173934129	173935129	+	918.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302649, intron 5 of 9)	intron (NM_001302649, intron 5 of 9)	7863.0	NM_001302649	15950.0	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Ifi203a|Ifi203b|Mndal	interferon activated gene 203	protein-coding	21.0	27.5	20.5	34.0	103.5	85.5
Merged-chr2-6748217-2	chr2	6747717	6748717	+	918.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 3 of 15)	intron (NM_001110232, intron 3 of 15)	-26555.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39370646-6	chr10	39370106	39371106	+	918.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122893, intron 1 of 13)	intron (NM_001122893, intron 1 of 13)	807.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134535005-4	chr6	134534446	134535446	+	918.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 2 of 22)	intron (NM_008514, intron 2 of 22)	31967.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	94.0	113.5	116.5	74.0	109.0	73.0
Merged-chr17-88116313-5	chr17	88115778	88116778	+	918.726685	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9234.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90024390-3	chr7	90023900	90024900	+	918.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4759.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	19.5	50.5	48.0	11.0	54.5	29.0
Merged-chr5-115441570-2	chr5	115441026	115442026	+	918.708374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008629, intron 9 of 14)	intron (NM_008629, intron 9 of 14)	11841.0	NM_008629	17690.0	Mm.5077	NM_008629	ENSMUSG00000054256	Msi1	Msi1h|Musahi1|m-Msi-1	musashi RNA-binding protein 1	protein-coding	0.0	0.0	1.5	7.5	0.0	0.0
Merged-chr4-136142297-4	chr4	136141819	136142819	+	918.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-1503.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	46.5	107.5	58.5	42.0	95.0	78.0
Merged-chr16-57215714-4	chr16	57215166	57216166	+	918.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 2 of 17)	intron (NM_026254, intron 2 of 17)	-14195.0	NM_001358434	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	49.5	116.0	78.5	72.5	117.0	112.0
Merged-chr15-80564366-4	chr15	80563861	80564861	+	918.69165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3891.0	NM_001163189	383075.0	Mm.297626	NM_001163189	ENSMUSG00000050439	Enthd1	Gm1242|Gm86	ENTH domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50761711-4	chr9	50761218	50762218	+	918.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001311073, exon 4 of 4)	3' UTR (NM_001311073, exon 4 of 4)	4215.0	NM_001311073	68721.0	Mm.171374	NM_023483	ENSMUSG00000037971	1110032A03Rik	4930500N06Rik|c11orf1	RIKEN cDNA 1110032A03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-17348068-4	chr19	17347582	17348582	+	918.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	-8577.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	8.0	13.0	12.5	19.0	14.5	22.0
Merged-chr12-108637201-4	chr12	108636697	108637697	+	918.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	1444.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111555477-3	chr13	111554967	111555967	+	918.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A|LTR|ERVL	-5558.0	NR_151444	102636218.0	Mm.343364	NR_151444	ENSMUSG00000085634	Gm15290	-	predicted gene 15290	ncRNA	0.0	0.0	3.5	5.0	0.0	0.0
Merged-chr13-58127447-3	chr13	58126954	58127954	+	918.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029872, exon 1 of 1)	exon (NM_029872, exon 1 of 1)	1102.0	NM_029872	77134.0	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	41.0	58.5	58.0	44.5	55.5	57.5
Merged-chr1-74367772-3	chr1	74367289	74368289	+	918.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033345, exon 8 of 10)	exon (NM_001033345, exon 8 of 10)	5681.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173740120-3	chr2	173739622	173740622	+	918.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019806, intron 1 of 5)	intron (NM_019806, intron 1 of 5)	2551.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120140809-4	chr9	120140292	120141292	+	918.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8950.0	NR_153960	17433.0	Mm.432562	NM_008614	ENSMUSG00000032517	Mobp	AI835053|AI839848|MOBP155|MOBP170|MOBP69|MOBP73|MOBP81|R74645	myelin-associated oligodendrocytic basic protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106414360-3	chr11	106413870	106414870	+	918.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023913, exon 11 of 22)	exon (NM_023913, exon 11 of 22)	-31589.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116025487-2	chr11	116024987	116025987	+	918.6666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008211)	promoter-TSS (NM_008211)	-983.0	NM_008211	15081.0	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84076285-2	chr8	84075785	84076785	+	918.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_009055, intron 2 of 20)	intron (NM_009055, intron 2 of 20)	9449.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	7.5	0.5	15.5	5.0	4.0	16.0
Merged-chr12-86948381-2	chr12	86947881	86948881	+	918.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_173735, intron 1 of 3)	intron (NM_173735, intron 1 of 3)	1038.0	NM_001289432	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34993692-3	chr13	34993153	34994153	+	918.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110331, intron 1 of 9)	intron (NM_001110331, intron 1 of 9)	491.0	NM_011868	23986.0	Mm.491141	NM_011868	ENSMUSG00000021417	Eci2	Acbd2|Drs1|Hca88|Peci	enoyl-Coenzyme A delta isomerase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70119581-3	chr14	70119067	70120067	+	918.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360404, intron 2 of 7)	intron (NM_001360404, intron 2 of 7)	19474.0	NM_001360404	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45104025-2	chr2	45103525	45104525	+	918.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	(GA)n|Simple_repeat|Simple_repeat	6252.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7050032-3	chr10	7049540	7050540	+	918.666626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26855.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr2-35509011-2	chr2	35508511	35509511	+	918.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-47562.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-56305395-4	chr8	56304915	56305915	+	918.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008278, intron 3 of 6)	Lx7|LINE|L1	10863.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	2.5	14.0	5.0	12.5	9.5	11.0
Merged-chr15-64278295-4	chr15	64277795	64278795	+	918.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	34378.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94586483-4	chr16	94585953	94586953	+	918.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	15546.0	NM_001113389	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94236235-4	chr11	94235740	94236740	+	918.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_181819, exon 2 of 2)	3' UTR (NM_181819, exon 2 of 2)	6339.0	NM_181819	278507.0	Mm.342216	NM_181819	ENSMUSG00000044177	Wfikkn2	2610304F08Rik|AY100450|Gasp1|WFIKKNRP	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2	protein-coding	0.5	0.0	0.0	1.0	4.5	1.0
Merged-chr2-25423265-4	chr2	25422782	25423782	+	918.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013524)	promoter-TSS (NM_013524)	40.0	NM_001289456	14347.0	Mm.1203	NM_013524	ENSMUSG00000036587	Fut7	AI853193|FTVII|Fuc-TVII|FucT-VII	fucosyltransferase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-69397357-4	chr17	69396859	69397859	+	918.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13555.0	NM_009547	22666.0	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89256179-3	chr6	89255663	89256663	+	918.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29562.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-61426096-4	chr3	61425590	61426590	+	918.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61583.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155619980-3	chr2	155619463	155620463	+	918.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085378, intron 11 of 41)	intron (NM_001085378, intron 11 of 41)	-2917.0	NR_030757	735275.0		NR_030757	ENSMUSG00000076312	Mir499	Mirn499|mir-499|mmu-mir-499	microRNA 499	ncRNA	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr19-45056475-4	chr19	45055971	45056971	+	918.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001178013)	TTS (NM_001178013)	8895.0	NM_001362381	94280.0	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35287766-4	chr12	35287265	35288265	+	918.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-92868.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	2.5	7.0	13.5	4.5	27.0	9.0
Merged-chr11-70074865-4	chr11	70074349	70075349	+	918.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17795.0	NM_007493	11890.0	Mm.1357	NM_007493	ENSMUSG00000040963	Asgr2	ASGPR2|Asgr|Asgr-2|HL-2	asialoglycoprotein receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-81657807-4	chr12	81657305	81658305	+	918.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033149, intron 1 of 2)	intron (NM_001033149, intron 1 of 2)	26556.0	NM_001033149	69480.0	Mm.130002	NM_001033149	ENSMUSG00000042734	Ttc9	-	tetratricopeptide repeat domain 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171017025-6	chr1	171016567	171017567	+	918.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1859.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67414690-4	chr15	67414200	67415200	+	918.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	187931.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80225397-4	chr15	80224869	80225869	+	918.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8711.0	NM_001357659	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	0.0	11.5	0.5	10.5	7.5	5.5
Merged-chr19-44344075-4	chr19	44343634	44344634	+	918.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183216, intron 5 of 5)	B1_Mur4|SINE|Alu	10808.0	NM_183216	329065.0	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	7.0	28.5	16.0	2.0	18.5	8.0
Merged-chr3-138530129-3	chr3	138529598	138530598	+	918.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007917, intron 2 of 7)	intron (NM_007917, intron 2 of 7)	2830.0	NM_001313980	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	25.0	15.0	15.0	27.0	22.0	13.0
Merged-chr11-106789946-3	chr11	106789459	106790459	+	918.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355677)	promoter-TSS (NM_001355677)	707.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-88059260-4	chr11	88058760	88059760	+	918.5458369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9019.0	NM_016686	22344.0	Mm.46628	NM_016686	ENSMUSG00000018377	Vezf1	AI848691|AW046909|db1	vascular endothelial zinc finger 1	protein-coding	9.5	1.0	0.5	0.5	1.0	0.0
Merged-chr2-163777073-3	chr2	163776573	163777573	+	918.544434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1|DNA|hAT-Tip100	-26834.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	2.0	1.0	9.0	3.0	0.5	8.0
Merged-chr8-105290292-5	chr8	105289770	105290770	+	918.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166394)	promoter-TSS (NM_001166394)	-742.0	NM_028888	74356.0	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135871172-4	chr7	135870651	135871651	+	918.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-154772.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181592674-7	chr2	181592148	181593148	+	918.514282	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164597)	promoter-TSS (NM_001164597)	-187.0	NM_001164597	269401.0	Mm.386888	NM_001164597	ENSMUSG00000000823	Zfp512b	Gm632|Znf512b	zinc finger protein 512B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-57231193-4	chr12	57230711	57231711	+	918.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164370, intron 1 of 9)	B1_Mm|SINE|Alu	786.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-126491636-4	chr2	126491149	126492149	+	918.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080944)	promoter-TSS (NM_001080944)	-96.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149644788-2	chr4	149644288	149645288	+	918.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023051, intron 14 of 18)	(TGGG)n|Simple_repeat|Simple_repeat	10779.0	NR_105990	102465983.0		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45622942-2	chr2	45622442	45623442	+	918.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73663.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45254612-4	chr9	45254097	45255097	+	918.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_136903, exon 6 of 6)	non-coding (NR_136903, exon 6 of 6)	12110.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9111605-2	chr4	9111105	9112105	+	918.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157688.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-87170649-2	chr9	87170149	87171149	+	918.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101482, intron 2 of 3)	intron (NM_001101482, intron 2 of 3)	21421.0	NM_001359955	244958.0	Mm.335337	NM_001101482	ENSMUSG00000042761	Mrap2	BB633055	melanocortin 2 receptor accessory protein 2	protein-coding	2.5	3.5	4.0	2.0	5.5	3.5
Merged-chr18-11941343-4	chr18	11940859	11941859	+	918.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001146287, exon 9 of 10)	exon (NM_001146287, exon 9 of 10)	-100921.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44471070-2	chr7	44470570	44471570	+	918.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_106019)	TTS (NR_106019)	723.0	NR_106019	102465637.0		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43675143-2	chr7	43674643	43675643	+	918.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_145582, exon 2 of 3)	exon (NM_145582, exon 2 of 3)	3112.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97381047-2	chr6	97380576	97381576	+	918.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	PB1D10|SINE|Alu	78210.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	7.5	14.0	0.5	5.5	11.5
Merged-chr18-4910964-2	chr18	4910464	4911464	+	918.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98478.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-69627805-4	chr18	69627315	69628315	+	918.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	281655.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47658979-3	chr17	47658479	47659479	+	918.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198421, intron 2 of 6)	intron (NM_198421, intron 2 of 6)	28289.0	NM_198421	224836.0	Mm.59393	NM_198421	ENSMUSG00000090115	Usp49	C330046L10Rik|Gm545	ubiquitin specific peptidase 49	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4943799-2	chr16	4943299	4944299	+	918.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028301, intron 11 of 16)	intron (NM_028301, intron 11 of 16)	-4214.0	NR_037666	100503704.0	Mm.480572	NR_037666	ENSMUSG00000097397	Gm16861	-	predicted gene, 16861	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70241055-2	chr11	70240555	70241555	+	918.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001331118)	TTS (NM_001331118)	-1203.0	NM_173742	52898.0	Mm.29852	NM_173742	ENSMUSG00000093989	Rnasek	2310033H11Rik|AA571397|D11Bwg0434e	ribonuclease, RNase K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-31891238-3	chr11	31890750	31891750	+	918.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290678, intron 2 of 7)	L1MD2|LINE|L1	20310.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	44.5	14.5	25.0	36.5	17.5	44.0
Merged-chr17-28209777-2	chr17	28209277	28210277	+	918.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027185, intron 1 of 10)	intron (NM_027185, intron 1 of 10)	1999.0	NM_027185	23853.0	Mm.204731	NM_027185	ENSMUSG00000002257	Def6	2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6	differentially expressed in FDCP 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122111641-2	chr5	122111141	122112141	+	918.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183307, intron 10 of 12)	intron (NM_183307, intron 10 of 12)	10690.0	NM_010861	17906.0	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38387741-2	chr15	38387241	38388241	+	918.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87030.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-89810890-2	chr1	89810390	89811390	+	918.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 12 of 16)	intron (NM_001037136, intron 12 of 16)	120286.0	NM_010262	14472.0	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57539649-2	chr9	57539149	57540149	+	918.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166364, intron 4 of 4)	intron (NM_001166364, intron 4 of 4)	2121.0	NM_001166364	78323.0	Mm.25814	NM_175273	ENSMUSG00000032305	Fam219b	2310046O06Rik|AI594866	family with sequence similarity 219, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28813957-2	chr7	28813457	28814457	+	918.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_177301, exon 3 of 13)	exon (NM_177301, exon 3 of 13)	3067.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-53258497-2	chr5	53257997	53258997	+	918.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8609.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180290026-6	chr1	180289544	180290544	+	918.477783	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33744.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91204846-4	chr2	91204339	91205339	+	918.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357067, intron 3 of 10)	intron (NM_001357067, intron 3 of 10)	1927.0	NM_007387	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	9.0	26.5	17.5	3.0	30.5	10.5
Merged-chr10-14545433-4	chr10	14544900	14545900	+	918.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001002268)	promoter-TSS (NM_001002268)	-364.0	NM_001002268	215798.0	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86396879-4	chr4	86396388	86397388	+	918.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029967, intron 22 of 27)	intron (NM_029967, intron 22 of 27)	161415.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138541719-4	chr1	138541205	138542205	+	918.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 3 of 9)	intron (NM_021605, intron 3 of 9)	78052.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32278011-4	chr19	32277504	32278504	+	918.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168525, intron 2 of 9)	intron (NM_001168525, intron 2 of 9)	-66991.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54448118-3	chr14	54447618	54448618	+	918.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-16029.0	NM_022993	65107.0	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	1.5	5.5	1.5	0.0	2.5	7.0
Merged-chr7-101616660-4	chr7	101616165	101617165	+	918.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-35504.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	21.0	23.0	19.5	15.5	48.5	21.0
Merged-chr12-111427920-4	chr12	111427411	111428411	+	918.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289487, intron 9 of 13)	intron (NM_001289487, intron 9 of 13)	10466.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-12053894-4	chr2	12053376	12054376	+	918.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-247370.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123319891-4	chr8	123319324	123320324	+	918.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-1248.0	NM_016925	14087.0	Mm.6536	NM_016925	ENSMUSG00000032815	Fanca	AW208693|FACA	Fanconi anemia, complementation group A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-8173832-4	chr14	8173317	8174317	+	918.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024221)	promoter-TSS (NM_024221)	-825.0	NM_024221	68263.0	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75873824-4	chr15	75873327	75874327	+	918.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	11488.0	NM_026960	69146.0	Mm.27385	NM_026960	ENSMUSG00000022575	Gsdmd	1810036L03Rik|AW558049|DF5L|Dfna5l|Gsdmdc1|M2-4	gasdermin D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41737744-4	chr4	41737244	41738244	+	918.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001286551)	TTS (NM_001286551)	3615.0	NM_001286540	18391.0	Mm.425181	NM_011014	ENSMUSG00000036078	Sigmar1	Oprs1|Sig1R|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119022926-4	chr11	119022415	119023415	+	918.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007623)	promoter-TSS (NM_007623)	-106.0	NM_007623	12416.0	Mm.14547	NM_007623	ENSMUSG00000025577	Cbx2	M33|MOD2|pc	chromobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63443622-5	chr14	63443149	63444149	+	918.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177628, intron 2 of 3)	intron (NM_177628, intron 2 of 3)	7255.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32084716-4	chr2	32084147	32085147	+	918.3988039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175511)	promoter-TSS (NM_175511)	22.0	NR_151493	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-132756429-4	chr3	132755919	132756919	+	918.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163455, intron 22 of 25)	intron (NM_001163455, intron 22 of 25)	72275.0	NM_001163455	271981.0	Mm.257864	NM_173032	ENSMUSG00000028030	Tbck	1700120J03Rik|9430001M19|A630047E20Rik|C030007I09Rik|Tbckl	TBC1 domain containing kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21037688-3	chr19	21037197	21038197	+	918.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67013.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	9.5	25.0	13.0	12.5	25.5	12.0
Merged-chr8-70562932-4	chr8	70562432	70563432	+	918.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	23257.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	3.5	4.0	5.5	8.5	6.0	5.0
Merged-chr17-36266066-4	chr17	36265553	36266553	+	918.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357889, intron 3 of 4)	ORR1E|LTR|ERVL-MaLR	5378.0	NM_001357889	79263.0	Mm.40624	NM_024468	ENSMUSG00000045409	Trim39	1100001D15Rik|E130103K13Rik|RBCC-B30.2|Rnf23|mKIAA4179|tfp	tripartite motif-containing 39	protein-coding	10.0	32.0	14.0	21.0	23.5	19.0
Merged-chr2-10005398-4	chr2	10004886	10005886	+	918.3583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027748, intron 2 of 6)	intron (NM_027748, intron 2 of 6)	43223.0	NM_027748	209361.0	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-36236603-4	chr2	36236107	36237107	+	918.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 2 of 10)	intron (NM_008969, intron 2 of 10)	6181.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8985552-2	chr19	8985235	8986235	+	918.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-3549.0	NR_104460	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	2.0	2.0	8.5	2.0	5.0	7.5
Merged-chr1-128832694-4	chr1	128832184	128833184	+	918.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAG)n|Simple_repeat|Simple_repeat	-240385.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-67184199-4	chr14	67183692	67184692	+	918.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49100.0	NM_010095	13592.0	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72820268-3	chr5	72819773	72820773	+	918.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	48175.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127570549-3	chr10	127570065	127571065	+	918.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 34 of 88)	intron (NM_008512, intron 34 of 88)	-36006.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.0	5.5	7.0	0.0	3.0	4.5
Merged-chr1-57852873-4	chr1	57852354	57853354	+	918.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164566, intron 1 of 11)	intron (NM_001164566, intron 1 of 11)	7283.0	NM_001164566	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	7.5	17.5	9.5	15.5	71.5	52.5
Merged-chr4-139743767-3	chr4	139743275	139744275	+	918.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011039, intron 8 of 8)	intron (NM_011039, intron 8 of 8)	89193.0	NM_011039	18509.0	Mm.218760	NM_011039	ENSMUSG00000028736	Pax7	Pax-7	paired box 7	protein-coding	23.0	69.0	63.5	5.0	2.0	0.5
Merged-chr1-162040721-3	chr1	162040201	162041201	+	918.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172646, intron 16 of 19)	L1MC4|LINE|L1	35732.0	NR_040562	72753.0	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA	3.5	10.0	3.5	18.5	9.5	7.0
Merged-chr9-14717977-3	chr9	14717493	14718493	+	918.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177905, intron 10 of 18)	intron (NM_177905, intron 10 of 18)	22740.0	NM_177905	330890.0	Mm.334969	NM_177905	ENSMUSG00000036912	Piwil4	9230101H05Rik|Miwi2	piwi-like RNA-mediated gene silencing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111583319-3	chr10	111582823	111583823	+	918.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10950.0	NR_045344	71321.0	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-67545345-3	chr11	67544819	67545819	+	918.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008088, intron 1 of 13)	intron (NM_008088, intron 1 of 13)	12321.0	NM_008088	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	1.5	0.0	3.5	0.0	0.0	0.5
Merged-chr8-71611999-4	chr8	71611500	71612500	+	918.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146211, intron 1 of 11)	intron (NM_146211, intron 1 of 11)	976.0	NM_146211	234407.0	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	119.0	247.5	208.0	114.5	244.5	193.0
Merged-chr2-93346387-8	chr2	93345785	93346785	+	918.2802119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11798.0	NM_183180	241556.0	Mm.274159	NM_183180	ENSMUSG00000027217	Tspan18	2610042G18Rik|6720430O15|BB226562	tetraspanin 18	protein-coding	0.0	7.0	2.5	2.5	13.0	4.5
Merged-chr1-151103837-3	chr1	151103336	151104336	+	918.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34198.0	NR_038011	402734.0	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120398444-4	chr14	120397946	120398946	+	918.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360380, intron 7 of 7)	intron (NM_001360380, intron 7 of 7)	-80015.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5859900-5	chr13	5859409	5860409	+	918.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1580.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21351504-4	chr16	21350994	21351994	+	918.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-18138.0	NR_131983	76222.0	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103552747-4	chr15	103552234	103553234	+	918.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12347.0	NM_001289587	14663.0	Mm.219621	NM_008134	ENSMUSG00000022491	Glycam1	MC26|Sgp50|glyCAM-1	glycosylation dependent cell adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102431710-4	chr12	102431206	102432206	+	918.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	L1Md_F2|LINE|L1	8107.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	11.0	46.5	27.5	11.5	36.5	21.5
Merged-chr1-36960315-4	chr1	36959817	36960817	+	918.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20790.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40575234-4	chr9	40574737	40575737	+	918.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43854.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	1.0	37.0	21.0	0.5	14.0	9.0
Merged-chr8-68993409-4	chr8	68992946	68993946	+	918.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95290.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	25.0	17.0	17.5	24.0	35.5	54.5
Merged-chr5-114769727-3	chr5	114769232	114770232	+	918.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019834, exon 2 of 19)	exon (NM_019834, exon 2 of 19)	3759.0	NM_019834	26431.0	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	0.0	7.0	0.0	0.0	15.0	1.5
Merged-chr4-102567779-5	chr4	102567304	102568304	+	918.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-2256.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20891531-2	chr9	20891031	20892031	+	918.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_145610, exon 10 of 11)	exon (NM_145610, exon 10 of 11)	3356.0	NM_145610	235036.0	Mm.2930	NM_145610	ENSMUSG00000004100	Ppan	A230087P06Rik|SSF1	peter pan homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142490660-4	chr3	142490162	142491162	+	918.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-6272.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.0	5.0	2.0	9.5	18.0	9.5
Merged-chr19-46135435-4	chr19	46134944	46135944	+	918.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008852)	TTS (NM_008852)	3545.0	NM_007703	12686.0	Mm.21806	NM_007703	ENSMUSG00000038754	Elovl3	CIN-2|Cig30	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52820497-4	chr13	52820008	52821008	+	918.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63303.0	NR_027893	105404.0	Mm.184173	NR_027893		BB123696	-	expressed sequence BB123696	ncRNA	4.0	0.0	4.0	0.0	2.5	7.0
Merged-chr18-56989696-4	chr18	56989203	56990203	+	918.229126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14324.0	NM_029909	77422.0	Mm.256874	NM_029909	ENSMUSG00000024592	C330018D20Rik	AU018666	RIKEN cDNA C330018D20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-35693289-3	chr11	35692784	35693784	+	918.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011412, intron 32 of 35)	intron (NM_011412, intron 32 of 35)	-76211.0	NM_145962	211347.0	Mm.255044	NM_145962	ENSMUSG00000018846	Pank3	-	pantothenate kinase 3	protein-coding	0.5	0.0	1.5	0.0	0.0	0.0
Merged-chr11-72411652-3	chr11	72411190	72412190	+	918.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177776)	promoter-TSS (NM_177776)	23.0	NM_177776	276829.0	Mm.46732	NM_177776	ENSMUSG00000045667	Smtnl2	D130058I21Rik	smoothelin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103419821-4	chr11	103419335	103420335	+	918.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7171.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	42.5	61.0	69.0	42.0	95.0	101.5
Merged-chr2-45277773-4	chr2	45277278	45278278	+	918.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-160336.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84195263-2	chr8	84194786	84195786	+	918.208374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-13232.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	1.0	12.0	0.5	0.0	2.0	5.0
Merged-chr17-43579911-4	chr17	43579420	43580420	+	918.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	11469.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	30.0	117.0	57.5	26.0	97.0	74.0
Merged-chr2-27428248-4	chr2	27427731	27428731	+	918.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009500)	promoter-TSS (NM_009500)	-623.0	NM_009500	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71203437-4	chr17	71202930	71203930	+	918.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	-1224.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126096805-2	chr7	126096305	126097305	+	918.2000119999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14394.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37307985-4	chr19	37307482	37308482	+	918.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031156, intron 10 of 23)	L1M5|LINE|L1	22631.0	NM_031156	15925.0	Mm.28366	NM_031156	ENSMUSG00000056999	Ide	1300012G03Rik|4833415K22Rik|AA675336|AI507533	insulin degrading enzyme	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-45492420-4	chr5	45491936	45492936	+	918.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024434)	promoter-TSS (NM_024434)	-938.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	7.5	19.5	16.0	1.0	4.5	4.5
Merged-chr10-79670442-4	chr10	79669947	79670947	+	918.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148934, intron 1 of 1)	intron (NM_148934, intron 1 of 1)	1037.0	NM_148934	110012.0	Mm.22623	NM_148934	ENSMUSG00000020308	Tpgs1	AV005629|Gm16517|Gtrgeo22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150570042-4	chr4	150569523	150570523	+	918.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	CpG	82151.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	31.0	88.5	29.5	18.5	63.0	45.0
Merged-chr11-57524821-3	chr11	57524308	57525308	+	918.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145426, intron 1 of 2)	intron (NM_145426, intron 1 of 2)	6143.0	NM_145426	216760.0	Mm.30501	NM_145426	ENSMUSG00000020522	Mfap3	2610509F16Rik|2700079M14Rik|AW536327	microfibrillar-associated protein 3	protein-coding	11.5	14.0	10.0	15.5	15.0	16.5
Merged-chr13-52981706-3	chr13	52981215	52982215	+	918.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017373)	promoter-TSS (NM_017373)	-676.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	0.0	4.5	1.0	8.5	2.0	4.0
Merged-chr2-181693811-6	chr2	181693287	181694287	+	918.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291208)	promoter-TSS (NM_001291208)	23.0	NM_001291206	56470.0	Mm.274366	NM_026446	ENSMUSG00000002458	Rgs19	2610042F04Rik|AI324841|AW547781|GAIP	regulator of G-protein signaling 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-111124934-3	chr5	111124419	111125419	+	918.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 5 of 22)	URR1A|DNA|hAT-Charlie	120775.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	0.0	0.0	0.0	0.0	5.0	1.5
Merged-chr11-118221742-2	chr11	118221242	118222242	+	918.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-9000.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45752269-4	chr17	45751773	45752773	+	918.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	17767.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40364452-4	chr4	40363963	40364963	+	918.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51231.0	NR_040663	75819.0	Mm.399244	NR_040663	ENSMUSG00000087137	4930509K18Rik	-	RIKEN cDNA 4930509K18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61983415-4	chr9	61982919	61983919	+	918.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 2 of 7)	ORR1E|LTR|ERVL-MaLR	-36620.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94358884-6	chr10	94358451	94359451	+	918.130981	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	47002.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120776758-4	chr9	120776238	120777238	+	918.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	138512.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-16468388-4	chr5	16467895	16468895	+	918.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-85100.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12648266-4	chr18	12647750	12648750	+	918.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028341, intron 1 of 13)	intron (NM_028341, intron 1 of 13)	4717.0	NM_028341	72747.0	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-143315996-3	chr6	143315499	143316499	+	918.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70111.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81067272-3	chr15	81066781	81067781	+	918.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	37766.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0.0	2.0	0.0	0.0	1.5	0.0
Merged-chr16-33397272-3	chr16	33396764	33397764	+	918.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358570, intron 1 of 8)	intron (NM_001358570, intron 1 of 8)	-3181.0	NM_001358569	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-78894384-7	chr1	78893891	78894891	+	918.107117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151519, intron 3 of 3)	intron (NR_151519, intron 3 of 3)	77480.0	NM_021342	57814.0	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding	6.5	23.5	34.0	9.5	17.5	29.5
Merged-chr7-127228965-3	chr7	127228425	127229425	+	918.095215	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-4136.0	NM_001360912	233887.0	Mm.258371	NM_146201	ENSMUSG00000045598	Zfp553	2600009K23Rik|AI431057|BC026401|C330013F15Rik|Znf48	zinc finger protein 553	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-46987111-3	chr7	46986593	46987593	+	918.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033461, intron 4 of 4)	intron (NR_033461, intron 4 of 4)	10461.0	NR_033461	629141.0	Mm.229259	NR_033461	ENSMUSG00000056509	Gm9999	-	predicted gene 9999	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128059303-4	chr7	128058803	128059803	+	918.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-3337.0	NM_001082960	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-81845213-4	chr12	81844679	81845679	+	918.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14851.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132180576-4	chr2	132180076	132181076	+	918.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35256.0	NM_001355430	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31388364-3	chr14	31387782	31388782	+	918.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	29395.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96910260-4	chr11	96909796	96910796	+	918.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030248, intron 10 of 13)	intron (NM_030248, intron 10 of 13)	6218.0	NM_001308183	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	0.5	0.0	0.0	1.5	0.0	0.0
Merged-chr15-95883815-4	chr15	95883317	95884317	+	918.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 2 of 19)	intron (NM_175344, intron 2 of 19)	-53745.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-60968710-4	chr8	60968205	60969205	+	918.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007711, intron 1 of 11)	Lx8|LINE|L1	-13906.0	NM_173876	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116140975-4	chr6	116140452	116141452	+	918.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 1 of 5)	intron (NM_177412, intron 1 of 5)	52422.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31296189-3	chr17	31295582	31296582	+	918.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001242427)	promoter-TSS (NM_001242427)	-142.0	NM_001242427	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75105798-3	chr10	75105323	75106323	+	918.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081412, intron 1 of 22)	MER58A|DNA|hAT-Charlie	44927.0	NM_001081412	110279.0	Mm.333722	NM_001081412	ENSMUSG00000009681	Bcr	5133400C09Rik|AI561783|AI853148|mKIAA3017	breakpoint cluster region	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45389138-3	chr7	45388646	45389646	+	918.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126539, intron 4 of 9)	intron (NR_126539, intron 4 of 9)	6596.0	NM_009224	20637.0	Mm.216386	NM_009224	ENSMUSG00000063511	Snrnp70	2700022N21Rik|3200002N22Rik|AI325098|R74807|Rnu1p70|Rnulp70|Snrp70|Srnp70|U1-70|U1-70K	small nuclear ribonucleoprotein 70 (U1)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-131702094-4	chr3	131701582	131702582	+	918.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136050.0	NM_001289477	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70674715-4	chr11	70674212	70675212	+	918.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178116, exon 15 of 23)	exon (NM_178116, exon 15 of 23)	-5296.0	NM_001167669	216873.0	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34966346-4	chr6	34965847	34966847	+	918.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025573, intron 2 of 7)	intron (NM_001025573, intron 2 of 7)	11652.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-19706634-4	chr14	19706159	19707159	+	918.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44598.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-58496786-4	chr2	58496303	58497303	+	918.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355048, intron 3 of 10)	intron (NM_001355048, intron 3 of 10)	64607.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70893781-4	chr8	70893284	70894284	+	918.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029751)	TTS (NM_029751)	-1027.0	NM_053248	114479.0	Mm.172923	NM_053248	ENSMUSG00000000792	Slc5a5	NIS	solute carrier family 5 (sodium iodide symporter), member 5	protein-coding	0.5	22.5	3.5	5.5	15.5	6.0
Merged-chr19-5606582-1	chr19	5606082	5607082	+	918.0	f1_balb.idr	intron (NR_155544, intron 9 of 14)	intron (NR_155544, intron 9 of 14)	3125.0	NR_037603	81601.0	Mm.228930	NM_178637	ENSMUSG00000024926	Kat5	AI839539|CPLA2|Htatip|Htatip1|PLIP|Tip55|Tip60	K(lysine) acetyltransferase 5	protein-coding	2.5	0.0	2.5	5.0	0.0	0.0
Merged-chr17-27015104-1	chr17	27014604	27015604	+	918.0	f1_balb.idr	Intergenic	PB1D9|SINE|Alu	-2931.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr1-184032813-2	chr1	184032313	184033313	+	918.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028516)	TTS (NM_028516)	1185.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	2.0	11.0	7.0	2.0	10.5	4.0
Merged-chr11-86578481-1	chr11	86577981	86578981	+	918.0	f0_balb.idr	Intergenic	Intergenic	5677.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101971259-5	chr7	101970817	101971817	+	918.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133947, intron 1 of 24)	intron (NM_133947, intron 1 of 24)	1474.0	NM_133947	101706.0	Mm.27259	NM_133947	ENSMUSG00000066306	Numa1	6720401E04Rik|AA764025|AL022610|AU014979|NuMA	nuclear mitotic apparatus protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11009132-2	chr16	11008632	11009632	+	918.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040518, intron 1 of 2)	intron (NR_040518, intron 1 of 2)	234.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122609583-2	chr6	122609083	122610083	+	918.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008108, intron 1 of 1)	intron (NM_008108, intron 1 of 1)	504.0	NM_008108	14562.0	Mm.299742	NM_008108	ENSMUSG00000030117	Gdf3	C78318|Gdf-3|Vgr-2|Vgr2|ecat9	growth differentiation factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-77266805-2	chr5	77266305	77267305	+	918.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011263, intron 1 of 3)	CpG	1311.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34896965-2	chr6	34896465	34897465	+	918.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013366, intron 6 of 14)	B1_Mus2|SINE|Alu	13866.0	NM_001013366	101240.0	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-66039727-2	chr4	66039227	66040227	+	918.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207109, intron 5 of 22)	Lx4A|LINE|L1	364756.0	NM_019514	56079.0	Mm.445312	NM_019514	ENSMUSG00000028373	Astn2	1d8|Astnl|bM452J22.1	astrotactin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108179244-4	chr6	108178739	108179739	+	918.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145937, intron 1 of 8)	intron (NM_145937, intron 1 of 8)	6344.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	4.5	27.5	4.5	14.0	41.0	10.5
Merged-chr10-78018992-3	chr10	78018482	78019482	+	918.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9175.0	NM_001358793	18641.0	Mm.269649	NM_008826	ENSMUSG00000020277	Pfkl	AA407869|ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver, B-type	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139388726-2	chr5	139388226	139389226	+	918.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	-1178.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-64867051-3	chr14	64866545	64867545	+	918.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 4 of 9)	intron (NM_177338, intron 4 of 9)	82812.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	27.5	15.5	9.0	1.5	5.0	11.5
Merged-chr11-79305265-2	chr11	79304765	79305765	+	918.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34627.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	46.0	77.5	110.5	40.0	73.5	77.0
Merged-chr10-51486820-1	chr10	51486320	51487320	+	918.0	f1_balb.idr	TTS (NM_001291893)	TTS (NM_001291893)	-4078.0	NM_001291894	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98457907-4	chr11	98457383	98458383	+	918.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	11049.0	NM_010346	14786.0	Mm.276702	NM_010346	ENSMUSG00000019312	Grb7	mKIAA4028	growth factor receptor bound protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-104590301-2	chr11	104589801	104590801	+	918.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13020.0	NM_001355755	17896.0	Mm.390355	NM_010858	ENSMUSG00000061086	Myl4	ALC1|AMLC|ELC|ELC1a|GT1|MLC1EMB|MLC1a|Myla	myosin, light polypeptide 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97473285-2	chr6	97472785	97473785	+	918.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-13999.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	28.5	17.5	14.5	7.0	22.5	10.0
Merged-chr11-74836833-2	chr11	74836333	74837333	+	918.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010813, exon 2 of 6)	exon (NM_010813, exon 2 of 6)	5909.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-22001350-2	chr10	22000850	22001850	+	918.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	6684.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100594290-3	chr13	100593818	100594818	+	918.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22626.0	NM_178410	218518.0	Mm.25300	NM_178410	ENSMUSG00000021636	Marveld2	BC003296|MARVD2|Mrvldc2|Tric|Trica|Tricb|Tricc	MARVEL (membrane-associating) domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21035760-4	chr19	21035263	21036263	+	918.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68947.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	25.0	64.0	30.0	29.5	63.0	36.5
Merged-chr6-81618185-4	chr6	81617696	81618696	+	918.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	277467.0	NR_106091	102465711.0		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72173247-1	chr8	72172747	72173747	+	918.0	f1_balb.idr	intron (NM_023126, intron 3 of 7)	intron (NM_023126, intron 3 of 7)	12047.0	NM_023126	17274.0	Mm.162811	NM_023126	ENSMUSG00000003037	Rab8a	AA409338|Mel	RAB8A, member RAS oncogene family	protein-coding	2.0	0.0	5.5	1.0	9.0	1.5
Merged-chr6-97273425-1	chr6	97272925	97273925	+	918.0	f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-20645.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	9.5	18.5	4.5	5.5	3.0	0.0
Merged-chr8-81767553-1	chr8	81767053	81768053	+	918.0	f0_c57.idr	intron (NM_001297593, intron 4 of 23)	intron (NM_001297593, intron 4 of 23)	424991.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	28.0	30.5	21.5	18.0	16.0	33.0
Merged-chr10-128372772-2	chr10	128372272	128373272	+	918.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-2735.0	NM_001081040	210582.0	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52458881-4	chr3	52458374	52459374	+	918.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58090.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43479698-4	chr4	43479181	43480181	+	918.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4028.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66238729-2	chr14	66238229	66239229	+	918.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-24905.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151087521-2	chr1	151087021	151088021	+	918.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-50513.0	NR_038011	402734.0	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78570548-2	chr15	78570048	78571048	+	918.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009008, intron 2 of 6)	intron (NM_009008, intron 2 of 6)	2235.0	NM_009008	19354.0	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	Rac family small GTPase 2	protein-coding	0.0	2.0	2.0	0.0	3.5	1.0
Merged-chr17-24518512-1	chr17	24518012	24519012	+	918.0	f1_c57bl6.idr	intron (NM_153792, intron 3 of 20)	intron (NM_153792, intron 3 of 20)	9426.0	NM_153792	224619.0	Mm.275150	NM_153792	ENSMUSG00000052752	Traf7	RFWD1	TNF receptor-associated factor 7	protein-coding	0.0	5.0	0.0	0.0	0.0	2.0
Merged-chr11-107478717-3	chr11	107478214	107479214	+	918.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025894)	promoter-TSS (NM_025894)	-814.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-99185549-4	chr4	99185044	99186044	+	918.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8390.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	26.0	150.5	62.5	28.0	80.5	78.5
Merged-chr11-101735167-4	chr11	101734713	101735713	+	918.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144831, intron 2 of 22)	URR1B|DNA|hAT-Charlie	2257.0	NM_144831	217207.0	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-28621691-4	chr6	28621197	28622197	+	918.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 10 of 23)	intron (NM_019776, intron 10 of 23)	141349.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132008273-4	chr2	132007765	132008765	+	918.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175445, intron 3 of 10)	intron (NM_175445, intron 3 of 10)	21723.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.0	0.0	0.0	5.5	14.5	20.0
Merged-chr7-3413327-2	chr7	3412827	3413827	+	918.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133190, intron 3 of 3)	intron (NM_133190, intron 3 of 3)	-1739.0	NR_128566	104795667.0		NR_128566	ENSMUSG00000094210	Gm23450	Mir935|mmu-mir-935	predicted gene, 23450	ncRNA	3.5	0.0	0.0	0.0	0.0	0.5
Merged-chr7-101539149-2	chr7	101538676	101539676	+	918.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16626.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	1.5	1.0	5.0	11.0	31.0	24.0
Merged-chr2-83711113-1	chr2	83710613	83711613	+	918.0	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-13284.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	4.5	12.0	6.0	6.0	7.0	12.5
Merged-chr9-44691052-2	chr9	44690552	44691552	+	918.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153537, intron 20 of 21)	intron (NM_153537, intron 20 of 21)	17819.0	NM_001277847	58866.0	Mm.45380	NM_021481	ENSMUSG00000032098	Treh	2210412M19Rik	trehalase (brush-border membrane glycoprotein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108609094-4	chr3	108608579	108609579	+	917.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358055, intron 1 of 14)	Lx7|LINE|L1	17346.0	NM_001358055	99512.0	Mm.285968	NM_181400	ENSMUSG00000040389	Wdr47	1810073M12Rik|AA552998|mKIAA0893	WD repeat domain 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120544945-4	chr2	120544470	120545470	+	917.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011743, intron 3 of 21)	Lx7|LINE|L1	18889.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96230616-4	chr3	96230107	96231107	+	917.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	8520.0	NM_054045	97114.0	Mm.358797	NM_054045	ENSMUSG00000081058	Hist2h3c2	H3-614|H3.2-614|Hist2h3c2-ps|Hist2h3ca1|M32461	histone cluster 2, H3c2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11917568-4	chr19	11917064	11918064	+	917.962524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172635, intron 2 of 18)	intron (NM_172635, intron 2 of 18)	5165.0	NM_172635	225929.0	Mm.42711	NM_172635	ENSMUSG00000046139	Patl1	AV312086|Pat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding	11.0	54.0	56.0	18.0	73.0	39.5
Merged-chr19-42152158-4	chr19	42151672	42152672	+	917.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_183195)	TTS (NM_183195)	4783.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163516650-4	chr2	163516136	163517136	+	917.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312906, intron 1 of 10)	intron (NM_001312906, intron 1 of 10)	9779.0	NM_001312907	15378.0	Mm.202383	NM_008261	ENSMUSG00000017950	Hnf4a	HNF-4|Hnf4|Hnf4alpha|MODY1|Nr2a1|TCF-14|Tcf14	hepatic nuclear factor 4, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100548284-4	chr11	100547790	100548790	+	917.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028918, intron 1 of 11)	intron (NM_028918, intron 1 of 11)	2658.0	NM_028918	74407.0	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-53194621-4	chr5	53194127	53195127	+	917.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172710, intron 2 of 23)	intron (NM_172710, intron 2 of 23)	18825.0	NM_172710	231238.0	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37284966-4	chr19	37284473	37285473	+	917.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031156, intron 17 of 23)	intron (NM_031156, intron 17 of 23)	-20878.0	NR_040298	77059.0	Mm.251476	NR_040298		4931408D14Rik	-	RIKEN cDNA 4931408D14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-17065335-4	chr2	17064820	17065820	+	917.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR3-int|LTR|ERVK	-51594.0	NR_040632	75069.0	Mm.50378	NR_040632		4930515L03Rik	-	RIKEN cDNA 4930515L03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-89342134-6	chr7	89341621	89342621	+	917.955566	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 2 of 14)	intron (NM_001360746, intron 2 of 14)	-3334.0	NM_001360745	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84698689-4	chr12	84698141	84699141	+	917.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033334, exon 1 of 4)	5' UTR (NM_001033334, exon 1 of 4)	166.0	NM_001033334	627191.0	Mm.152484	NM_001033334	ENSMUSG00000071234	Syndig1l	DSPC1|Gm261|SynDIG2|Tmem90a	synapse differentiation inducing 1 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120531067-2	chr11	120530567	120531567	+	917.9500119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_008101, intron 1 of 13)	intron (NM_008101, intron 1 of 13)	340.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108759920-4	chr8	108759436	108760436	+	917.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	45292.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145351439-4	chr6	145350922	145351922	+	917.929199	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36203.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	49.5	124.0	71.5	31.0	79.5	57.5
Merged-chr15-13172448-4	chr15	13171949	13172949	+	917.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007666, intron 1 of 11)	intron (NM_007666, intron 1 of 11)	1226.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-105047496-4	chr13	105046977	105047977	+	917.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029879, intron 2 of 5)	intron (NM_029879, intron 2 of 5)	7453.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116436153-4	chr11	116435639	116436639	+	917.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176902, intron 2 of 2)	intron (NM_176902, intron 2 of 2)	1926.0	NR_003376	664849.0	Mm.258466	NR_003376		Gm7367	EG664849	1110014K08Rik pseudogene	pseudo	23.0	41.0	22.0	33.5	32.5	22.5
Merged-chr3-28746319-4	chr3	28745814	28746814	+	917.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34963.0	NM_177586	208691.0	Mm.193670	NM_177586	ENSMUSG00000050192	Eif5a2	9630038B20|eIF5AII	eukaryotic translation initiation factor 5A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161728784-4	chr1	161728281	161729281	+	917.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59714.0	NM_001205243	14103.0	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	7.5	1.0	15.0	0.0	6.5	2.0
Merged-chr3-40698953-4	chr3	40698376	40699376	+	917.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175515, intron 14 of 15)	L2a|LINE|L2	-9995.0	NM_178386	73333.0	Mm.78691	NM_178386	ENSMUSG00000069041	Slc25a31	1700034J06Rik|Ant4|Sfec	solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-104603335-2	chr7	104602835	104603835	+	917.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6156.0	NM_146820	258817.0	Mm.377706	NM_146820	ENSMUSG00000051182	Olfr655	MOR38-1	olfactory receptor 655	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-5058330-4	chr7	5057857	5058857	+	917.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146178, intron 3 of 4)	intron (NM_146178, intron 3 of 4)	1631.0	NM_146178	232821.0	Mm.482157	NM_146178	ENSMUSG00000035228	Ccdc106	BC018462	coiled-coil domain containing 106	protein-coding	1.0	2.5	6.0	1.0	2.5	6.0
Merged-chr2-32083321-3	chr2	32082811	32083811	+	917.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151493, exon 2 of 6)	non-coding (NR_151493, exon 2 of 6)	394.0	NM_175511	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34610591-4	chr2	34609965	34610965	+	917.880981	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290625, intron 10 of 11)	B4A|SINE|B4	144767.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22632109-4	chr11	22631614	22632614	+	917.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	119831.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128803821-4	chr10	128803411	128804411	+	917.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358267)	promoter-TSS (NM_001358267)	56.0	NM_001358267	73827.0	Mm.24630	NM_178066	ENSMUSG00000047090	Tmem198b	1110012D08Rik	transmembrane protein 198b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119265702-6	chr9	119265216	119266216	+	917.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359582, intron 8 of 18)	intron (NM_001359582, intron 8 of 18)	-34024.0	NR_033303	109280.0	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	24.0	27.5	29.0	12.5	26.5	25.5
Merged-chr1-23187897-4	chr1	23187343	23188343	+	917.8583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84426.0	NR_029533	387225.0		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32651195-4	chr16	32650716	32651716	+	917.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110147, intron 1 of 13)	intron (NM_001110147, intron 1 of 13)	6573.0	NM_016788	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92976638-8	chr1	92976094	92977094	+	917.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271766, intron 1 of 1)	intron (NM_001271766, intron 1 of 1)	1247.0	NM_001271766	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35041776-2	chr9	35041267	35042267	+	917.849976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74961.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	3.5	5.0	11.5	1.5	9.5	12.0
Merged-chr16-38441809-2	chr16	38441312	38442312	+	917.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	-8667.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	0.0	1.5	0.5	0.0	0.5	1.0
Merged-chr3-79124388-2	chr3	79123842	79124842	+	917.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001099624, intron 1 of 23)	intron (NM_001099624, intron 1 of 23)	20545.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	8.5	27.5	6.0	4.0	14.5	5.5
Merged-chr1-80630488-4	chr1	80629982	80630982	+	917.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 3 of 55)	intron (NM_175291, intron 3 of 55)	34870.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99240766-3	chr9	99240258	99241258	+	917.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2583.0	NM_023873	68121.0	Mm.288739	NM_023873	ENSMUSG00000056267	Cep70	6720484E09Rik|Bite|C030018L16Rik	centrosomal protein 70	protein-coding	3.0	3.0	1.5	3.0	1.0	1.5
Merged-chr6-29171225-4	chr6	29170747	29171747	+	917.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001101443, exon 5 of 5)	exon (NM_001101443, exon 5 of 5)	-6523.0	NM_133925	68272.0	Mm.40802	NM_026650	ENSMUSG00000029701	Rbm28	2810480G15Rik|AI503051	RNA binding motif protein 28	protein-coding	0.0	3.0	0.0	0.0	4.5	0.0
Merged-chr9-107567021-4	chr9	107566601	107567601	+	917.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019742)	TTS (NM_019742)	-2062.0	NM_010489	15587.0	Mm.4834	NM_010489	ENSMUSG00000010047	Hyal2	AI256841|AU020858|AW555733	hyaluronoglucosaminidase 2	protein-coding	20.5	48.0	29.5	22.5	30.0	16.5
Merged-chr19-61229144-4	chr19	61228631	61229631	+	917.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009970)	promoter-TSS (NM_009970)	-713.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	24.5	30.5	34.0	15.0	35.5	28.0
Merged-chr1-131086369-2	chr1	131085869	131086869	+	917.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	11474.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-115485480-3	chr9	115484980	115485980	+	917.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	103661.0	NR_130329	100316675.0		NR_130329	ENSMUSG00000080409	Mir467h	Mirn467h|mmu-mir-467h	microRNA 467h	ncRNA	37.5	33.5	24.0	3.5	0.0	0.5
Merged-chr10-125371623-4	chr10	125371109	125372109	+	917.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42646.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32779338-4	chr19	32778822	32779822	+	917.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 2 of 8)	intron (NM_008960, intron 2 of 8)	21745.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-40917860-4	chr14	40917410	40918410	+	917.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 3 of 8)	intron (NM_145928, intron 3 of 8)	-24945.0	NM_177816	328381.0	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14873197-4	chr8	14872704	14873704	+	917.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15332.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	7.0	0.0	1.5	3.5	0.0	1.5
Merged-chr4-102543157-4	chr4	102542637	102543637	+	917.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-26923.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.0	17.0	0.0	0.0	0.0	0.0
Merged-chr7-101539968-3	chr7	101539444	101540444	+	917.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	15858.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	0.0	3.5	2.0	0.0	3.5	2.0
Merged-chr7-74662167-3	chr7	74661662	74662662	+	917.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107382.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4212396-4	chr16	4211894	4212894	+	917.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025432, intron 1 of 30)	intron (NM_001025432, intron 1 of 30)	1010.0	NM_001025432	12914.0	Mm.132238	NM_001025432	ENSMUSG00000022521	Crebbp	AW558298|CBP|CBP/p300|KAT3A|p300/CBP	CREB binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55642108-4	chr19	55641627	55642627	+	917.757141	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045318, exon 4 of 4)	non-coding (NR_045318, exon 4 of 4)	60077.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-13415615-3	chr13	13415116	13416116	+	917.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21986.0	NM_010917	18073.0	Mm.4691	NM_010917	ENSMUSG00000005397	Nid1	A630025O17|Nid|entactin|entactin-1|nidogen-1	nidogen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-33443742-4	chr8	33443244	33444244	+	917.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40567.0	NR_033589	628431.0	Mm.376526	NR_033589		Hmgb1-rs17	Hmg1-rs17	high mobility group box 1, related sequence 17	pseudo	10.5	16.0	6.5	3.0	0.5	1.5
Merged-chr11-23772599-2	chr11	23772099	23773099	+	917.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1629.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-74104697-4	chr10	74104198	74105198	+	917.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142748, intron 3 of 25)	intron (NM_001142748, intron 3 of 25)	282831.0	NM_001142735	11994.0	Mm.338933	NM_023115	ENSMUSG00000052613	Pcdh15	BB078305|Gm9815|Ush1f|av|nmf19|roda	protocadherin 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-47989929-2	chr8	47989429	47990429	+	917.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_133791, intron 1 of 22)	CpG	622.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34751264-3	chr19	34750766	34751766	+	917.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4155.0	NM_172838	240638.0	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	1.5	0.0	1.0	1.5	0.0	1.0
Merged-chr3-105058646-2	chr3	105058146	105059146	+	917.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5500.0	NM_030249	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127768208-3	chr3	127767713	127768713	+	917.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027808, intron 1 of 13)	intron (NM_027808, intron 1 of 13)	12314.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	29.0	17.0	19.5	12.5	33.0	24.0
Merged-chr14-61676106-4	chr14	61675612	61676612	+	917.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	6261.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-49771249-3	chr2	49770782	49771782	+	917.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008449, exon 26 of 26)	3' UTR (NM_008449, exon 26 of 26)	-16404.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-81324661-4	chr16	81324182	81325182	+	917.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113208, intron 1 of 17)	MTE2b|LTR|ERVL-MaLR	123985.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3138511-5	chr11	3137953	3138953	+	917.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 22 of 32)	MT2B|LTR|ERVL	14432.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-35972411-4	chr1	35971931	35972931	+	917.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95969.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59073836-4	chr13	59073365	59074365	+	917.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 16 of 17)	intron (NM_001025074, intron 16 of 17)	266168.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	3.0	0.0	0.0	0.0	0.0	2.0
Merged-chr4-58566908-4	chr4	58566394	58567394	+	917.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13403.0	NM_010336	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	2.5	12.5	17.0	1.5	12.5	19.5
Merged-chr9-32696938-3	chr9	32696436	32697436	+	917.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038642, intron 1 of 6)	intron (NM_001038642, intron 1 of 6)	894.0	NM_001038642	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	1.0	9.0	5.5	5.5	5.0	5.5
Merged-chr17-25015367-3	chr17	25014862	25015862	+	917.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020608)	promoter-TSS (NM_020608)	-132.0	NM_020608	57354.0	Mm.328854	NM_020608	ENSMUSG00000038002	Cramp1l	5830477H08Rik|AI256853|AI790734|Cramp1|Tce4|mKIAA1426	cramped chromatin regulator homolog 1	protein-coding	4.5	33.5	20.0	10.0	43.5	31.5
Merged-chr16-33793358-3	chr16	33792841	33793841	+	917.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010739)	promoter-TSS (NM_010739)	-696.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70633008-3	chr11	70632532	70633532	+	917.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-6090.0	NM_010326	14723.0	Mm.377085	NM_010326	ENSMUSG00000050675	Gp1ba	GP-Ib alpha|GPIba|GPIbalpha	glycoprotein 1b, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121861488-3	chr8	121860994	121861994	+	917.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31925.0	NM_145605	234825.0	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	0.0	0.0	2.0	0.0	0.0	2.5
Merged-chr2-92482787-2	chr2	92482287	92483287	+	917.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22269.0	NM_145832	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-66713577-2	chr17	66713068	66714068	+	917.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151453)	promoter-TSS (NR_151453)	-888.0	NR_151453	102639882.0	Mm.443262	NR_151453		1700016K05Rik	-	RIKEN cDNA 1700016K05 gene	ncRNA	6.5	0.0	1.0	0.0	0.0	1.0
Merged-chr15-7083310-2	chr15	7082810	7083810	+	917.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-46262.0	NM_001113386	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126563872-4	chr8	126563376	126564376	+	917.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29560.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	5.0	4.0	5.5	5.0	4.0	6.5
Merged-chr7-99014844-2	chr7	99014344	99015344	+	917.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 7 of 14)	intron (NM_178635, intron 7 of 14)	126300.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	10.5	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5692098-5	chr19	5691473	5692473	+	917.6611330000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022012, intron 3 of 11)	intron (NM_022012, intron 3 of 11)	2842.0	NM_022012	26403.0	Mm.185026	NM_022012	ENSMUSG00000004054	Map3k11	2610017K16Rik|Mlk3|PTK1|SPRK	mitogen-activated protein kinase kinase kinase 11	protein-coding	4.5	9.0	21.5	8.5	33.0	29.5
Merged-chr19-55383427-3	chr19	55382926	55383926	+	917.6555179999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360432, intron 4 of 7)	intron (NM_001360432, intron 4 of 7)	67369.0	NM_001293686	53611.0	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45661515-4	chr14	45661077	45662077	+	917.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3434.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	15.5	71.5	55.5	12.5	35.5	34.0
Merged-chr19-34390145-4	chr19	34389661	34390661	+	917.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER76|LTR|ERVL	84974.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	7.0	10.0	8.0	3.5	2.0	2.5
Merged-chr2-167996584-4	chr2	167996114	167997114	+	917.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080708, intron 4 of 21)	MLTR14|LTR|ERV1	13979.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36464445-2	chr18	36463945	36464945	+	917.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-9950.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	0.0	1.0	0.0	0.0	4.5	0.0
Merged-chr12-55480989-4	chr12	55480537	55481537	+	917.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11610.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60748697-4	chr18	60748187	60749187	+	917.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008306)	promoter-TSS (NM_008306)	-22.0	NM_008306	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	26.0	23.5	8.0	7.5	5.5	22.5
Merged-chr19-22930680-4	chr19	22930193	22931193	+	917.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035239, intron 21 of 24)	intron (NM_001035239, intron 21 of 24)	180088.0	NR_029591	387200.0		NR_029591	ENSMUSG00000065507	Mir204	Mirn204|mir-204|mmu-mir-204	microRNA 204	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34152109-4	chr19	34151607	34152607	+	917.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024204, intron 1 of 5)	intron (NM_024204, intron 1 of 5)	13934.0	NM_024204	52024.0	Mm.183030	NM_024204	ENSMUSG00000024774	Ankrd22	5430429D21Rik|D19Ertd675e	ankyrin repeat domain 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-16309776-4	chr5	16309279	16310279	+	917.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110843, intron 12 of 38)	intron (NM_001110843, intron 12 of 38)	-243716.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139292058-2	chr4	139291558	139292558	+	917.583374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001271405)	TTS (NM_001271405)	18650.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	8.5	1.5	1.5	5.5	7.0	1.0
Merged-chr5-64161037-4	chr5	64160597	64161597	+	917.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 1 of 19)	intron (NM_019636, intron 1 of 19)	837.0	NM_001310611	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-97239713-4	chr13	97239206	97240206	+	917.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1399.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10944138-4	chr19	10943652	10944652	+	917.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023731, intron 2 of 3)	MIR|SINE|MIR	5114.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-13441119-5	chr17	13440721	13441721	+	917.55835	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-80235.0	NR_030763	272667.0	Mm.444718	NR_030763	ENSMUSG00000079711	Smok4a	4930513D10Rik|Smok2c	sperm motility kinase 4A	pseudo	0.0	0.0	6.5	3.0	7.0	1.0
Merged-chr6-29544135-3	chr6	29543643	29544643	+	917.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177296, intron 21 of 22)	intron (NM_177296, intron 21 of 22)	14861.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92428329-3	chr16	92427853	92428853	+	917.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-28275.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30548306-8	chr14	30547837	30548837	+	917.5520630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009388)	promoter-TSS (NM_009388)	-794.0	NM_009388	21881.0	Mm.290692	NM_009388	ENSMUSG00000021957	Tkt	p68	transketolase	protein-coding	104.0	111.0	69.0	48.0	112.5	64.5
Merged-chr7-142462746-4	chr7	142462270	142463270	+	917.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136071, intron 1 of 10)	intron (NM_001136071, intron 1 of 10)	1958.0	NM_001136071	16985.0	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	6.0	2.0	2.5	1.0	1.0	1.0
Merged-chr9-55153074-4	chr9	55152568	55153568	+	917.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346658, intron 1 of 12)	intron (NM_001346658, intron 1 of 12)	2985.0	NM_001346658	109161.0	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47319761-3	chr6	47319257	47320257	+	917.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75361.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-29966234-6	chr14	29965820	29966820	+	917.5277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-2060.0	NM_019979	80795.0	Mm.104491	NM_019979	ENSMUSG00000042682	Selenok	1110001C03Rik|AA673253|HSPC030|Hsp30|Selk	selenoprotein K	protein-coding	9.0	28.5	28.5	15.5	12.5	18.0
Merged-chr10-88719631-4	chr10	88719132	88720132	+	917.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11469.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-66930164-4	chr10	66929658	66930658	+	917.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-9774.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12415210-2	chr13	12414710	12415710	+	917.5166630000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_144835, intron 20 of 44)	B2_Mm1a|SINE|B2	19835.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12734216-4	chr19	12733699	12734699	+	917.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	31433.0	NM_170786	12803.0	Mm.290924	NM_053007	ENSMUSG00000079415	Cntf	AI429687	ciliary neurotrophic factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84671978-3	chr18	84671483	84672483	+	917.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023149, intron 7 of 11)	intron (NM_023149, intron 7 of 11)	10076.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142384455-4	chr7	142383984	142384984	+	917.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009983, intron 2 of 8)	intron (NM_009983, intron 2 of 8)	3386.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	7.0	30.5	13.0	1.5	6.0	1.5
Merged-chr3-86812901-3	chr3	86812407	86813407	+	917.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195500, intron 8 of 11)	intron (NM_001195500, intron 8 of 11)	107977.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78447866-3	chr15	78447363	78448363	+	917.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355601, intron 10 of 17)	intron (NM_001355601, intron 10 of 17)	19299.0	NR_110357	72844.0	Mm.390816	NM_001081367	ENSMUSG00000033287	Kctd17	2900008M13Rik|AA414907|AW742389|N28155	potassium channel tetramerisation domain containing 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-30508059-2	chr3	30507559	30508559	+	917.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361034, intron 1 of 16)	CpG	1616.0	NM_001361034	14013.0	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	4.0	1.5	1.5	3.0	2.0	1.5
Merged-chr15-84448278-2	chr15	84447778	84448778	+	917.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1181.0	NM_001163145	72301.0	Mm.275387	NM_001163145	ENSMUSG00000062760	1810041L15Rik	Kiaa1644|Shisal1	RIKEN cDNA 1810041L15 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69656035-2	chr11	69655535	69656535	+	917.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001301710)	TTS (NM_001301710)	998.0	NM_009235	20670.0	Mm.347499	NM_009235	ENSMUSG00000041287	Sox15	-	SRY (sex determining region Y)-box 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182614647-3	chr1	182614143	182615143	+	917.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130890, intron 12 of 20)	intron (NM_130890, intron 12 of 20)	49636.0	NM_130890	170725.0	Mm.189201	NM_130890	ENSMUSG00000038599	Capn8	nCL-2|nCL-2'	calpain 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72548283-2	chr6	72547783	72548783	+	917.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042534)	promoter-TSS (NM_001042534)	-990.0	NM_001042534	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	1.5	1.0	8.0	1.5	1.0	8.0
Merged-chr8-105333402-2	chr8	105332902	105333902	+	917.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_177699, exon 13 of 22)	exon (NM_177699, exon 13 of 22)	7038.0	NM_025486	66320.0	Mm.29990	NM_025486	ENSMUSG00000014856	Tmem208	1700006C06Rik|2610030K20Rik|Hspc171	transmembrane protein 208	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-71053657-2	chr3	71053172	71054172	+	917.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-246381.0	NR_040556	625901.0	Mm.366028	NR_040556	ENSMUSG00000097252	Gm6634	EG625901	predicted gene 6634	ncRNA	3.5	0.0	2.0	3.5	0.0	0.0
Merged-chr11-116101773-2	chr11	116101273	116102273	+	917.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8462.0	NM_001205081	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97510395-2	chr6	97509895	97510895	+	917.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-22575.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123024951-2	chr8	123024451	123025451	+	917.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	17333.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-121154800-2	chr1	121154300	121155300	+	917.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67395.0	NR_110450	98452.0	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166627165-2	chr2	166626665	166627665	+	917.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 5 of 39)	ORR1C2|LTR|ERVL-MaLR	62643.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-49057668-2	chr9	49057168	49058168	+	917.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_012039, exon 2 of 16)	exon (NM_012039, exon 2 of 16)	2087.0	NM_012039	26951.0	Mm.24791	NM_012039	ENSMUSG00000032264	Zw10	6330566F14Rik|MmZw10	zw10 kinetochore protein	protein-coding	0.0	5.5	0.0	0.0	3.5	0.0
Merged-chr2-11290597-2	chr2	11290097	11291097	+	917.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 16 of 17)	CpG-7733	-48892.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-18608113-3	chr19	18607609	18608609	+	917.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	23704.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-99244227-2	chr11	99243727	99244727	+	917.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361584)	promoter-TSS (NM_001361584)	-80.0	NM_172946	268481.0	Mm.133193	NM_172946	ENSMUSG00000035849	Krt222	6330509G02Rik	keratin 222	protein-coding	0.0	0.0	0.5	0.5	0.0	0.0
Merged-chr10-61096116-2	chr10	61095616	61096616	+	917.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6785.0	NM_025273	13180.0	Mm.39473	NM_025273	ENSMUSG00000020098	Pcbd1	Dcoh|Pcbd|Pcd|Phs	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40244951-2	chr4	40244451	40245451	+	917.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5126.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11336699-4	chr8	11336206	11337206	+	917.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009932, intron 3 of 47)	intron (NM_009932, intron 3 of 47)	-23880.0	NM_009931	12826.0	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122867457-2	chr8	122866957	122867957	+	917.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007662)	TTS (NM_007662)	19083.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.0	1.0	0.0	3.0	0.0	0.0
Merged-chr11-5791272-2	chr11	5790772	5791772	+	917.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146309, intron 1 of 12)	intron (NM_001146309, intron 1 of 12)	2789.0	NM_013810	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	0.0	0.0	0.0	1.0	4.0	0.5
Merged-chr5-124542045-2	chr5	124541545	124542545	+	917.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019770, intron 1 of 3)	intron (NM_019770, intron 1 of 3)	1254.0	NM_019770	56334.0	Mm.325307	NM_019770	ENSMUSG00000029390	Tmed2	1110032D12Rik|1810020N21Rik|Rnp24|Sid394|p24beta1	transmembrane p24 trafficking protein 2	protein-coding	1.5	5.5	3.0	0.0	11.0	8.0
Merged-chr17-5496392-2	chr17	5495892	5496892	+	917.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	3792.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84126627-4	chr15	84126145	84127145	+	917.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3470.0	NM_029427	75772.0	Mm.159565	NM_029427	ENSMUSG00000018868	Pnpla5	4833426H19Rik|GS2L	patatin-like phospholipase domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29828759-4	chr19	29828261	29829261	+	917.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-15787.0	NM_177721	240614.0	Mm.125503	NM_177721	ENSMUSG00000074909	Ranbp6	C630001B19	RAN binding protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27469374-4	chr15	27468864	27469864	+	917.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020332, intron 1 of 11)	intron (NM_020332, intron 1 of 11)	2687.0	NM_020332	11732.0	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109347782-4	chr11	109347254	109348254	+	917.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027883, intron 1 of 1)	intron (NR_027883, intron 1 of 1)	887.0	NR_027883	67927.0	Mm.394490	NR_027883	ENSMUSG00000099630	1700096J18Rik	-	RIKEN cDNA 1700096J18 gene	ncRNA	5.0	18.5	5.0	5.0	11.5	8.0
Merged-chr6-31457159-4	chr6	31456653	31457653	+	917.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013791, intron 8 of 17)	MTEb-int|LTR|ERVL-MaLR	58325.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49004537-3	chr7	49004000	49005000	+	917.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	45427.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34511616-3	chr6	34511174	34512174	+	917.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35318.0	NM_007563	12183.0	Mm.282863	NM_007563	ENSMUSG00000038871	Bpgm	AI323730|AL022789|C86192	2,3-bisphosphoglycerate mutase	protein-coding	2.5	21.0	2.5	9.5	0.0	4.0
Merged-chr3-149395284-4	chr3	149394780	149395780	+	917.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	120543.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100965293-4	chr7	100964791	100965791	+	917.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183168)	promoter-TSS (NM_183168)	-925.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	0.0	0.0	0.0	0.0	1.0	0.5
Merged-chr19-41402240-4	chr19	41401758	41402758	+	917.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17188.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84859622-4	chr18	84859127	84860127	+	917.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348159, intron 1 of 5)	(CCCCCA)n|Simple_repeat|Simple_repeat	8289.0	NM_001348159	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56681419-4	chr19	56680819	56681819	+	917.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41053.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164835571-5	chr2	164835079	164836079	+	917.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038492, intron 6 of 14)	intron (NM_001038492, intron 6 of 14)	1806.0	NM_008906	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	3.5	11.5	9.5	3.5	11.5	9.5
Merged-chr7-25315492-5	chr7	25315034	25316034	+	917.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183311, exon 15 of 15)	exon (NM_183311, exon 15 of 15)	-1630.0	NM_001160400	269878.0	Mm.38527	NM_001160400	ENSMUSG00000045039	Megf8	AW049492|Egfl4|b2b1702.2Clo|b2b1702Clo|b2b288Clo|m687Ddg|mKIAA0817	multiple EGF-like-domains 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-34457365-3	chr4	34456844	34457844	+	917.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93271.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103374758-4	chr11	103374248	103375248	+	917.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 7 of 11)	intron (NM_183034, intron 7 of 11)	-11056.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	1.0	11.5	13.5	14.5	16.0	12.0
Merged-chr9-104281916-4	chr9	104281411	104282411	+	917.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18981.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-62929417-4	chr13	62928951	62929951	+	917.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-35442.0	NM_001289926	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-175142005-4	chr2	175141467	175142467	+	917.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64950.0	NM_001164689	626832.0	Mm.441314	NM_001164689	ENSMUSG00000078887	Gm6710	1600017I02Rik|2310011F05Rik|2900089K14Rik|3100002L24Rik|WF-4	predicted gene 6710	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70626314-4	chr8	70625802	70626802	+	917.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVK26-int|LTR|ERVK	5793.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	26.0	62.0	35.0	23.0	79.0	53.5
Merged-chr1-128593235-3	chr1	128592718	128593718	+	917.3428960000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009911)	promoter-TSS (NM_009911)	-919.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	1.0	7.0	0.5	0.0	11.0	3.0
Merged-chr2-113453679-4	chr2	113453136	113454136	+	917.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 2 of 16)	ORR1E|LTR|ERVL-MaLR	12572.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-78724642-4	chr1	78724167	78725167	+	917.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66227.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	1.0	0.0	6.0	1.0	0.0	0.0
Merged-chr15-78927449-3	chr15	78927015	78928015	+	917.3412480000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008495, intron 1 of 3)	intron (NM_008495, intron 1 of 3)	790.0	NM_008495	16852.0	Mm.43831	NM_008495	ENSMUSG00000068220	Lgals1	AA410090|Gal-1|Galbp|L-14.5|L14|Lect14|galectin-1	lectin, galactose binding, soluble 1	protein-coding	0.0	4.5	4.5	0.0	8.0	1.0
Merged-chr6-148354658-4	chr6	148354174	148355174	+	917.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003634)	promoter-TSS (NR_003634)	18.0	NR_003634	66184.0	Mm.391542	NM_025405	ENSMUSG00000063171	Rps4l	1110033J19Rik|AA407494|Rps4y2	ribosomal protein S4-like	pseudo	2.5	0.0	4.5	7.0	0.0	8.0
Merged-chr3-88502307-2	chr3	88501807	88502807	+	917.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002011, intron 1 of 11)	intron (NM_001002011, intron 1 of 11)	1045.0	NM_001111102	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-26711420-2	chr19	26710920	26711920	+	917.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011416, intron 25 of 32)	intron (NM_011416, intron 25 of 32)	-36745.0	NM_001347439	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-20285605-2	chr8	20285105	20286105	+	917.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_030708, intron 1 of 4)	B3A|SINE|B2	11827.0	NR_030708	547150.0	Mm.359054	NR_030708	ENSMUSG00000071796	6820431F20Rik	-	cadherin 11 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70541791-2	chr8	70541291	70542291	+	917.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	2116.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	1.5	14.5	11.5	12.0	12.0	12.0
Merged-chr18-23871345-2	chr18	23870845	23871845	+	917.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	67375.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76617405-2	chr15	76616905	76617905	+	917.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028064)	promoter-TSS (NM_028064)	-553.0	NM_028064	72027.0	Mm.276829	NM_028064	ENSMUSG00000063354	Slc39a4	1600025H15Rik|AU041686|AWMS2|ZIP4	solute carrier family 39 (zinc transporter), member 4	protein-coding	1.5	0.0	0.0	1.0	0.0	0.0
Merged-chr8-8459080-4	chr8	8458598	8459598	+	917.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	201675.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37315213-4	chr1	37314692	37315692	+	917.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	15354.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191069439-3	chr1	191068941	191069941	+	917.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198654, intron 2 of 5)	intron (NM_198654, intron 2 of 5)	6420.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	15.0	39.5	52.5	6.5	16.5	21.0
Merged-chr13-23454138-3	chr13	23453645	23454645	+	917.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11756.0	NM_013483	12231.0	Mm.1420	NM_013483	ENSMUSG00000000706	Btn1a1	Btn	butyrophilin, subfamily 1, member A1	protein-coding	1.0	30.5	9.5	1.0	30.5	9.0
Merged-chr13-113426115-3	chr13	113425621	113426621	+	917.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76723.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105932667-3	chr1	105932171	105933171	+	917.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C-int|LTR|ERVK	57611.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100429328-3	chr7	100428847	100429847	+	917.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 20 of 32)	MER90|LTR|ERV1	-43644.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-59441530-3	chr14	59441007	59442007	+	917.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001320725)	promoter-TSS (NM_001320725)	544.0	NM_001360592	69008.0	Mm.179091	NM_026908	ENSMUSG00000021981	Cab39l	1500031K13Rik|2810425O13Rik|4930520C08Rik|AA589432|MO2L	calcium binding protein 39-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120027461-3	chr4	120026949	120027949	+	917.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-133757.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130660163-3	chr4	130659646	130660646	+	917.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3175.0	NM_030722	80912.0	Mm.440206	NM_030722	ENSMUSG00000028580	Pum1	AA517475|Pumm|mKIAA0099	pumilio RNA-binding family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-31177356-4	chr7	31176847	31177847	+	917.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14989.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	3.5	1.0	0.0	2.5	0.0	6.0
Merged-chr9-44087935-6	chr9	44087429	44088429	+	917.305542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198091, intron 1 of 11)	intron (NM_198091, intron 1 of 11)	3009.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107904555-5	chr13	107904032	107905032	+	917.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14468.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	44.0	123.0	72.5	42.0	108.5	75.5
Merged-chr19-41597320-2	chr19	41596816	41597816	+	917.2999880000001	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	8665.0	NR_106166	102465884.0		NR_106166	ENSMUSG00000098286	Mir8091	Gm27575|mmu-mir-8091	microRNA 8091	ncRNA	10.5	8.5	6.5	0.0	4.0	2.0
Merged-chr10-57726771-2	chr10	57726271	57727271	+	917.2999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_008863, intron 4 of 5)	RMER1A|Other|Other	-58152.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27196007-2	chr3	27195507	27196507	+	917.2999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	RMER1A|Other|Other	13003.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89764406-4	chr3	89763867	89764867	+	917.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009602, exon 1 of 6)	exon (NM_009602, exon 1 of 6)	265.0	NM_009602	11444.0	Mm.35088	NM_009602	ENSMUSG00000027950	Chrnb2	Acrb-2|Acrb2|C030030P04Rik|[b]2-nAchR	cholinergic receptor, nicotinic, beta polypeptide 2 (neuronal)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50763544-3	chr15	50763033	50764033	+	917.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	125516.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	17.5	48.0	30.0	12.5	38.0	39.0
Merged-chr17-51398177-4	chr17	51397674	51398674	+	917.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037268, intron 3 of 4)	intron (NR_037268, intron 3 of 4)	50095.0	NR_046166	328837.0	Mm.236143	NR_046166		C330011F03Rik	C330011F03	RIKEN cDNA C330011F03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39415986-4	chr6	39415464	39416464	+	917.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018810, intron 1 of 7)	B3|SINE|B2	3812.0	NM_001311109	54484.0	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39344140-2	chr6	39343640	39344640	+	917.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_155077, intron 12 of 13)	intron (NR_155077, intron 12 of 13)	33295.0	NR_155076	72144.0	Mm.482167	NM_028123	ENSMUSG00000029924	Slc37a3	2610507O21Rik|AU044904	solute carrier family 37 (glycerol-3-phosphate transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94082491-4	chr10	94081984	94082984	+	917.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 3 of 20)	LTR48|LTR|ERV1	46483.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	2.5	6.0	7.5	2.5	6.0	8.0
Merged-chr2-45035492-2	chr2	45034992	45035992	+	917.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-12315.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-42939667-3	chr17	42939167	42940167	+	917.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63243.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	26.0	40.0	23.0	26.5	38.5	27.5
Merged-chr10-53449326-3	chr10	53448828	53449828	+	917.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	39446.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-56118875-2	chr4	56118375	56119375	+	917.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR78|LTR|ERV1	-586400.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79251068-4	chr11	79250558	79251558	+	917.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019653, exon 2 of 9)	exon (NM_019653, exon 2 of 9)	3637.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120437457-4	chr8	120436953	120437953	+	917.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51413.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-31299355-4	chr10	31298860	31299860	+	917.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14045.0	NM_027168	69692.0	Mm.245537	NM_027168	ENSMUSG00000000295	Hddc2	2310057G13Rik	HD domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141281549-4	chr4	141280997	141281997	+	917.1770630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3058.0	NR_151527	100503810.0		NR_151527	ENSMUSG00000085395	Gm13056	-	predicted gene 13056	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60698193-3	chr13	60697692	60698692	+	917.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	L1M5|LINE|L1	88172.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	2.0	1.5	4.0	0.0	0.0	0.0
Merged-chr4-150239692-3	chr4	150239166	150240166	+	917.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023119, intron 2 of 11)	PB1D10|SINE|Alu	2342.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	17.5	55.0	54.5	21.5	41.0	73.0
Merged-chr19-47508877-4	chr19	47508393	47509393	+	917.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175360, intron 8 of 9)	intron (NM_175360, intron 8 of 9)	-4089.0	NR_045322	100503104.0	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA	0.0	0.0	0.5	1.0	0.0	5.5
Merged-chr10-80073873-3	chr10	80073389	80074389	+	917.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359635, intron 4 of 31)	intron (NM_001359635, intron 4 of 31)	1550.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94942771-2	chr8	94942243	94943243	+	917.1666869999999	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001145972, exon 12 of 12)	3' UTR (NM_001145972, exon 12 of 12)	19049.0	NM_001145972	382045.0	Mm.334726	NM_001033468	ENSMUSG00000061577	Adgrg5	Gm1109|Gpr114|PGR27	adhesion G protein-coupled receptor G5	protein-coding	0.0	4.0	2.5	0.5	0.0	0.5
Merged-chr13-41487254-6	chr13	41486725	41487725	+	917.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001111324, exon 1 of 8)	5' UTR (NM_001111324, exon 1 of 8)	135.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13540089-4	chr10	13539583	13540583	+	917.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019961, intron 3 of 11)	intron (NM_019961, intron 3 of 11)	-12824.0	NM_025748	66757.0	Mm.331841	NM_025748	ENSMUSG00000019808	Adat2	4933426M09Rik|Deadc1	adenosine deaminase, tRNA-specific 2	protein-coding	5.0	0.0	10.5	4.0	7.0	11.5
Merged-chr3-9407187-4	chr3	9406730	9407730	+	917.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015499, intron 1 of 1)	intron (NR_015499, intron 1 of 1)	4152.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	3.5	14.5	12.0	1.0	14.5	15.0
Merged-chr13-41029497-4	chr13	41028993	41029993	+	917.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145802, intron 11 of 11)	intron (NM_001145802, intron 11 of 11)	13243.0	NM_001360770	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41525475-4	chr13	41524974	41525974	+	917.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38114.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103279975-2	chr15	103279475	103280475	+	917.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019817, intron 1 of 8)	B2_Mm2|SINE|B2	-5150.0	NR_029766	724064.0		NR_029766	ENSMUSG00000065560	Mir148b	Mirn148b|mir-148b	microRNA 148b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-24432216-3	chr19	24431705	24432705	+	917.1555789999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008846, intron 3 of 14)	intron (NM_008846, intron 3 of 14)	45269.0	NM_026520	68034.0	Mm.440181	NM_026520	ENSMUSG00000074922	Fam122a	2410124L17Rik|2900009I07Rik|Gm9849	family with sequence similarity 122, member A	protein-coding	20.5	23.5	14.5	9.0	10.0	5.0
Merged-chr8-70844695-4	chr8	70844126	70845126	+	917.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032397, intron 9 of 9)	intron (NM_032397, intron 9 of 9)	-4906.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	0.0	10.0	1.5	5.5	6.5	0.0
Merged-chr16-20088002-4	chr16	20087512	20088512	+	917.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9542.0	NM_029436	75785.0	Mm.392450	NM_029436	ENSMUSG00000062901	Klhl24	1110046J11Rik|4930429H24Rik|6530402O20Rik|C85082	kelch-like 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33777408-4	chr16	33776965	33777965	+	917.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-16572.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119401337-4	chr9	119400759	119401759	+	917.1083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313757)	promoter-TSS (NM_001313757)	-919.0	NM_007397	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	7.5	10.0	6.0	5.5	26.0	14.5
Merged-chr4-128957379-4	chr4	128956867	128957867	+	917.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301841, intron 2 of 8)	intron (NM_001301841, intron 2 of 8)	5088.0	NM_172875	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-3079438-2	chr17	3078935	3079935	+	917.099976	f0_balb.idr|f1_balb.idr	non-coding (NR_003519, exon 3 of 8)	non-coding (NR_003519, exon 3 of 8)	4748.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122422339-6	chr5	122421853	122422853	+	917.0972289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019805)	promoter-TSS (NM_019805)	-91.0	NM_019805	56317.0	Mm.37341	NM_019805	ENSMUSG00000029466	Anapc7	APC7|AW545589	anaphase promoting complex subunit 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115079399-3	chr11	115078956	115079956	+	917.095215	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11975.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93712986-2	chr16	93712486	93713486	+	917.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027293, intron 1 of 36)	intron (NM_027293, intron 1 of 36)	1079.0	NM_027293	70028.0	Mm.23230	NM_026700	ENSMUSG00000022946	Dopey2	0610038M01Rik|2610510B01Rik|AI503246|C21orf5|mKIAA0933	dopey family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113271444-4	chr13	113270988	113271988	+	917.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	61829.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-52098783-4	chr9	52098290	52099290	+	917.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16833.0	NR_105750	102465150.0		NR_105750	ENSMUSG00000099311	Mir6244	Gm27368|mmu-mir-6244	microRNA 6244	ncRNA	1.0	0.0	1.5	8.5	6.0	0.5
Merged-chr11-52003206-4	chr11	52002698	52003698	+	917.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1023.0	NM_001166657	213084.0	Mm.280557	NM_153785	ENSMUSG00000020389	Cdkl3	AI852479|B230379H01Rik	cyclin-dependent kinase-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9213569-3	chr18	9213097	9214097	+	917.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008058, exon 1 of 1)	exon (NM_008058, exon 1 of 1)	741.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	0.0	0.0	1.0	0.0	0.0	2.5
Merged-chr6-58661162-4	chr6	58660671	58661671	+	917.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355477, intron 2 of 15)	intron (NM_001355477, intron 2 of 15)	64499.0	NM_011920	26357.0	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116666787-4	chr11	116666306	116667306	+	917.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163318, intron 4 of 4)	intron (NM_001163318, intron 4 of 4)	-4854.0	NR_027821	66293.0	Mm.432051	NM_025472	ENSMUSG00000020812	1810032O08Rik	-	RIKEN cDNA 1810032O08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-6137684-4	chr18	6137196	6138196	+	917.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1598.0	NM_001039692	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	6.5	27.5	17.5	5.5	5.0	15.5
Merged-chr5-86942919-4	chr5	86942417	86943417	+	917.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-16414.0	NM_152811	71773.0	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12257224-4	chr13	12256732	12257732	+	917.037476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081128, intron 1 of 32)	intron (NM_001081128, intron 1 of 32)	881.0	NM_001081128	238505.0	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96554752-4	chr9	96554258	96555258	+	917.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053268, intron 17 of 23)	intron (NM_053268, intron 17 of 23)	-76083.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-14188087-4	chr10	14187480	14188480	+	917.0125119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	221601.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	2.0	8.5	4.5	0.0	1.0	10.0
Merged-chr15-40023374-1	chr15	40022874	40023874	+	917.0	f0_balb.idr	Intergenic	Intergenic	-21814.0	NR_155348	102636079.0	Mm.421381	NR_155348	ENSMUSG00000115142	Gm33251	-	predicted gene, 33251	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-15960939-1	chr3	15960439	15961439	+	917.0	f0_balb.idr	intron (NM_001081687, intron 3 of 3)	intron (NM_001081687, intron 3 of 3)	45393.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	7.5	5.0	27.0	32.0	58.0	40.5
Merged-chr12-69167311-2	chr12	69166811	69167811	+	917.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1503.0	NR_155206	69706.0	Mm.28847	NM_001081406	ENSMUSG00000034883	Lrr1	2410005L11Rik|AU021780|LRR-1|Ppil5	leucine rich repeat protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49210475-2	chr13	49209975	49210975	+	917.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026738, intron 1 of 5)	L1M4c|LINE|L1	5551.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69407474-2	chr11	69407013	69408013	+	917.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001017426, exon 6 of 23)	exon (NM_001017426, exon 6 of 23)	6162.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	6.0	5.0	1.0	0.0	2.0	4.0
Merged-chr7-46009833-2	chr7	46009333	46010333	+	917.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018795, intron 10 of 30)	intron (NM_018795, intron 10 of 30)	20453.0	NM_018795	27421.0	Mm.63514	NM_018795	ENSMUSG00000030834	Abcc6	Abcc1b|DCC|Dyscalc1|Mrp6|dyscalc	ATP-binding cassette, sub-family C (CFTR/MRP), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-123065666-3	chr3	123065174	123066174	+	917.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30687.0	NM_001355462	59006.0	Mm.141157	NM_021503	ENSMUSG00000028116	Myoz2	1110012I24Rik|Fatz-2|Myozl2	myozenin 2	protein-coding	5.5	12.5	1.5	0.0	0.0	6.5
Merged-chr14-116683602-1	chr14	116683102	116684102	+	917.0	f1_balb.idr	Intergenic	Intergenic	-241695.0	NM_001079844	23888.0	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr12-80214248-2	chr12	80213748	80214748	+	917.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 1 of 20)	intron (NM_134156, intron 1 of 20)	46123.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-3358479-2	chr13	3357979	3358979	+	917.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-119824.0	NR_015522	76937.0	Mm.487240	NR_015522	ENSMUSG00000097709	2810429I04Rik	AI256682	RIKEN cDNA 2810429I04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10527952-1	chr19	10527452	10528452	+	917.0	f1_c57bl6.idr	intron (NM_172302, intron 2 of 9)	intron (NM_172302, intron 2 of 9)	2708.0	NM_172302	269061.0	Mm.490260	NM_172302	ENSMUSG00000034820	Cpsf7	5730453I16Rik|AL022757|C330017N18Rik	cleavage and polyadenylation specific factor 7	protein-coding	0.5	0.0	1.0	1.0	0.0	1.5
Merged-chr8-119356841-2	chr8	119356341	119357341	+	917.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	12303.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76654011-1	chr15	76653511	76654511	+	917.0	f1_balb.idr	intron (NM_019396, intron 2 of 4)	intron (NM_019396, intron 2 of 4)	2883.0	NM_001357882	54151.0	Mm.247752	NM_019396	ENSMUSG00000053929	Cyhr1	1110031M01Rik|AU042374|Chrp	cysteine and histidine rich 1	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr7-113324184-1	chr7	113323684	113324684	+	917.0	f1_balb.idr	intron (NM_133700, intron 9 of 10)	intron (NM_133700, intron 9 of 10)	45155.0	NM_133700	68815.0	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	0.5	5.5	3.0	2.5	9.5	4.5
Merged-chr4-43630336-3	chr4	43629844	43630844	+	917.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1591.0	NM_001355466	230103.0	Mm.103477	NM_173788	ENSMUSG00000028469	Npr2	GC-B|GC-B2|GC-B3|cn|mNPR-B|pwe	natriuretic peptide receptor 2	protein-coding	0.0	0.0	2.5	0.0	0.0	0.0
Merged-chr6-55017115-4	chr6	55016606	55017606	+	917.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20895.0	NM_180678	353172.0	Mm.250004	NM_180678	ENSMUSG00000029777	Gars	GENA202|Gena201|Nmf249|Sgrp23	glycyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120115350-2	chr8	120114850	120115850	+	917.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172286, intron 1 of 12)	intron (NM_172286, intron 1 of 12)	1198.0	NM_001163761	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-40503396-1	chr6	40502896	40503896	+	917.0	f0_balb.idr	Intergenic	Intergenic	9804.0	NM_020502	57253.0	Mm.377132	NM_020502	ENSMUSG00000037140	Tas2r108	T2R108|T2r8|Tas2r4|Tas2r8|mGR08|mt2r8	taste receptor, type 2, member 108	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55465444-2	chr11	55464944	55465944	+	917.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4236.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111677556-2	chr12	111677056	111678056	+	917.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001099792)	promoter-TSS (NM_001099792)	-549.0	NM_001099792	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29513351-4	chr17	29512857	29513857	+	917.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22312.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.0	0.0	1.0	3.5	1.0	1.0
Merged-chr13-73434989-2	chr13	73434489	73435489	+	917.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32394.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115839725-2	chr6	115839225	115840225	+	917.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010774)	TTS (NM_010774)	-1313.0	NM_001110506	212516.0	Mm.333333	NM_198603	ENSMUSG00000030321	Efcab12	BB124106	EF-hand calcium binding domain 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16257454-3	chr7	16256941	16257941	+	917.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001173550, intron 1 of 1)	B2_Mm2|SINE|B2	1897.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	9.0	24.5	35.0	5.0	25.5	17.5
Merged-chr10-66918639-4	chr10	66918121	66919121	+	917.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_138560, exon 2 of 5)	non-coding (NR_138560, exon 2 of 5)	1763.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-46818159-2	chr12	46817659	46818659	+	917.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021361, intron 1 of 4)	intron (NM_021361, intron 1 of 4)	616.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100924853-2	chr12	100924353	100925353	+	917.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026681, intron 25 of 29)	intron (NM_026681, intron 25 of 29)	-16655.0	NM_001177673	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54620453-1	chr6	54619953	54620953	+	917.0	f0_balb.idr	intron (NM_001001335, intron 6 of 13)	intron (NM_001001335, intron 6 of 13)	17306.0	NM_001001335	231999.0	Mm.35416	NM_001001335	ENSMUSG00000005225	Plekha8	6330400G01|AA517676|BC052360|Fapp-2|Fapp2	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25199386-2	chr8	25198886	25199886	+	917.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177089, intron 2 of 12)	PB1D10|SINE|Alu	2156.0	NM_199323	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99453650-1	chr7	99453150	99454150	+	917.0	f1_balb.idr	intron (NM_201352, intron 12 of 17)	intron (NM_201352, intron 12 of 17)	-12354.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr4-141950901-2	chr4	141950401	141951401	+	917.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 13 of 31)	MT2B|LTR|ERVL	-32091.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-53782518-4	chr1	53782003	53783003	+	917.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133810, intron 1 of 7)	intron (NM_133810, intron 1 of 7)	2712.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	68.5	138.5	49.5	52.5	108.0	45.5
Merged-chr2-30092638-2	chr2	30092138	30093138	+	917.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037762, intron 1 of 4)	intron (NM_001037762, intron 1 of 4)	997.0	NM_025428	66220.0	Mm.22538	NM_025428	ENSMUSG00000015335	Zdhhc12	1190004A01Rik	zinc finger, DHHC domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11472319-2	chr8	11471819	11472819	+	917.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	MT2C_Mm|LTR|ERVL	-5610.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80401657-2	chr10	80401157	80402157	+	917.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-2126.0	NM_001306143	17192.0	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60301467-2	chr10	60300967	60301967	+	917.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011179, intron 14 of 14)	intron (NM_011179, intron 14 of 14)	17006.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-70946932-4	chr2	70946443	70947443	+	916.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	71431.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91328699-4	chr2	91328144	91329144	+	916.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175123, intron 3 of 8)	intron (NM_175123, intron 3 of 8)	63529.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	19.0	16.5	5.0	1.5	3.0	5.5
Merged-chr3-65315930-4	chr3	65315410	65316410	+	916.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357358, intron 7 of 13)	(TTTTG)n|Simple_repeat|Simple_repeat	-13225.0	NR_126080	102637797.0	Mm.446731	NR_126080	ENSMUSG00000104093	A330015K06Rik	-	RIKEN cDNA A330015K06 gene	ncRNA	5.5	22.0	18.0	7.0	17.0	17.0
Merged-chr13-95679308-3	chr13	95678755	95679755	+	916.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 17 of 35)	intron (NM_027711, intron 17 of 35)	-17665.0	NM_010170	14064.0	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	4.5	7.0	12.5	28.5	50.0	40.0
Merged-chr8-36185373-3	chr8	36184893	36185893	+	916.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29383.0	NR_151736	330738.0	Mm.128075	NR_151736	ENSMUSG00000109704	Gm38414	A230084N10|Gm45568	predicted gene, 38414	ncRNA	0.0	0.0	0.0	1.0	0.0	1.5
Merged-chr18-9731692-3	chr18	9731211	9732211	+	916.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	24063.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	31.5	41.5	42.5	48.0	68.5	56.0
Merged-chr18-5941391-4	chr18	5940899	5941899	+	916.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	194699.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	4.0	2.0	1.0	0.5	15.5	10.0
Merged-chr13-117052972-4	chr13	117052462	117053462	+	916.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	-27446.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0.0	2.0	0.5	0.0	2.0	0.5
Merged-chr4-87870741-4	chr4	87870255	87871255	+	916.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027326, intron 4 of 10)	intron (NM_027326, intron 4 of 10)	-64432.0	NM_029931	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51255022-3	chr14	51254501	51255501	+	916.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_053113)	TTS (NM_053113)	1111.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	9.0	6.5	5.0	13.0	5.0	14.0
Merged-chr14-72710598-3	chr14	72710093	72711093	+	916.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207636)	promoter-TSS (NM_207636)	-590.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	15.5	29.5	34.0	18.0	37.0	31.5
Merged-chr9-57759501-3	chr9	57758985	57759985	+	916.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007713, intron 3 of 12)	intron (NM_007713, intron 3 of 12)	6375.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-31507021-3	chr13	31506514	31507514	+	916.8777470000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51156.0	NM_008239	15220.0	Mm.44235	NM_008239	ENSMUSG00000038415	Foxq1	HFH-1|Hfh1|Hfh1l|sa	forkhead box Q1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20732693-2	chr14	20732193	20733193	+	916.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_010811, intron 2 of 14)	intron (NM_010811, intron 2 of 14)	1869.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	21.0	19.5	19.0	7.5	10.0	24.0
Merged-chr16-4381696-4	chr16	4381198	4382198	+	916.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009624, intron 2 of 10)	intron (NM_009624, intron 2 of 10)	38800.0	NM_001291910	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67172869-4	chr15	67172372	67173372	+	916.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 1 of 8)	intron (NM_009177, intron 1 of 8)	4010.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	12.5	17.5	26.0	10.0	29.0	10.5
Merged-chr7-28932679-4	chr7	28932190	28933190	+	916.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021895, intron 1 of 20)	intron (NM_021895, intron 1 of 20)	29642.0	NM_001360549	60595.0	Mm.81144	NM_021895	ENSMUSG00000054808	Actn4	C77391	actinin alpha 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25609542-4	chr14	25609053	25610053	+	916.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 6 of 23)	intron (NM_183208, intron 6 of 23)	6040.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	0.0	1.0	0.5	0.0	2.0	3.0
Merged-chr9-69290468-3	chr9	69289964	69290964	+	916.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289916, intron 1 of 9)	CpG	623.0	NM_001289916	19883.0	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99032282-7	chr15	99031797	99032797	+	916.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009448, intron 1 of 3)	intron (NM_009448, intron 1 of 3)	2406.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	1.5	4.0	9.5	1.5	13.0	4.5
Merged-chr10-86977497-4	chr10	86976987	86977987	+	916.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 5 of 68)	intron (NM_138673, intron 5 of 68)	30455.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55209024-2	chr13	55208524	55209524	+	916.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008739)	promoter-TSS (NM_008739)	-758.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109367040-4	chr11	109366538	109367538	+	916.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010303, intron 2 of 3)	intron (NM_010303, intron 2 of 3)	-3384.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	12.0	49.0	35.5	20.5	39.0	23.5
Merged-chr16-16035731-3	chr16	16035279	16036279	+	916.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 7 of 18)	Lx9|LINE|L1	111072.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	6.5	0.0	2.0	5.5	0.0	1.0
Merged-chr1-172346929-3	chr1	172346437	172347437	+	916.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	5727.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	72.0	103.5	65.5	35.0	67.5	54.5
Merged-chr7-31034888-4	chr7	31034386	31035386	+	916.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287217, intron 8 of 8)	intron (NM_001287217, intron 8 of 8)	5431.0	NR_106017	102465635.0		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	3.0	13.5	5.0	0.0	0.0	2.0
Merged-chr9-20898009-2	chr9	20897509	20898509	+	916.7999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_016876, intron 3 of 10)	intron (NM_016876, intron 3 of 10)	581.0	NM_016876	53356.0	Mm.427309	NM_016876	ENSMUSG00000070319	Eif3g	44kDa|D0Jmb4|Eif3s4|TU-189B2|eIF3-p44|p44	eukaryotic translation initiation factor 3, subunit G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135256750-4	chr4	135256248	135257248	+	916.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	16012.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31445646-3	chr3	31445142	31446142	+	916.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-135323.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17691470-4	chr12	17690942	17691942	+	916.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	CpG	633.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	18.0	48.0	30.5	8.5	34.5	42.0
Merged-chr11-54821038-4	chr11	54820567	54821567	+	916.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040284, intron 1 of 2)	intron (NR_040284, intron 1 of 2)	1148.0	NR_040284	432562.0	Mm.406948	NR_040284	ENSMUSG00000086789	Lyrm7os	Gm12228	LYR motif containing 7, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121426030-2	chr14	121425530	121426530	+	916.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-46800.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-61139488-2	chr1	61138988	61139988	+	916.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161574.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88257699-8	chr1	88257231	88258231	+	916.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001281466, exon 38 of 42)	exon (NM_001281466, exon 38 of 42)	11677.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24461665-4	chr7	24461187	24462187	+	916.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011113)	promoter-TSS (NM_011113)	-796.0	NM_011113	18793.0	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120293977-4	chr1	120293485	120294485	+	916.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-22903.0	NM_001085409	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	9.5	8.5	6.5	4.0	14.0	2.5
Merged-chr1-85989213-4	chr1	85988661	85989661	+	916.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28106.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103929593-4	chr14	103929089	103930089	+	916.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-85113.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127509124-4	chr10	127508604	127509604	+	916.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177707)	TTS (NM_177707)	-5835.0	NM_001098789	407790.0	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110449309-4	chr5	110448798	110449798	+	916.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142642)	promoter-TSS (NM_001142642)	-795.0	NM_001142642	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35108316-4	chr2	35107812	35108812	+	916.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1180.0	NM_012018	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-78631104-3	chr14	78630611	78631611	+	916.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104044, intron 1 of 27)	B1F|SINE|Alu	-1821.0	NM_001281794	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	5.5
Merged-chr2-6380101-4	chr2	6379597	6380597	+	916.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181399, intron 1 of 13)	intron (NM_181399, intron 1 of 13)	27361.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-111687845-4	chr4	111687330	111688330	+	916.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32180.0	NM_026470	67946.0	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136581540-6	chr1	136580999	136581999	+	916.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-43402.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149890150-3	chr4	149889600	149890600	+	916.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64906.0	NM_029035	74646.0	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70122265-3	chr17	70121760	70122760	+	916.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 2 of 14)	intron (NM_001347411, intron 2 of 14)	153187.0	NM_001347411	224997.0	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	DLG associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55100088-3	chr11	55099590	55100590	+	916.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010299, intron 1 of 3)	MIRb|SINE|MIR	2105.0	NM_010299	14667.0	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60351443-4	chr10	60350930	60351930	+	916.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028732, intron 1 of 6)	intron (NM_028732, intron 1 of 6)	4579.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44325838-4	chr10	44325340	44326340	+	916.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001314013, intron 5 of 6)	MTE2b|LTR|ERVL-MaLR	-33836.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-121885668-4	chr2	121885159	121886159	+	916.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205371, intron 1 of 9)	(A)n|Simple_repeat|Simple_repeat	17954.0	NM_001205371	319996.0	Mm.292109	NM_177054	ENSMUSG00000060227	Casc4	D130060C09Rik|VGFG2573	cancer susceptibility candidate 4	protein-coding	0.0	2.0	5.0	0.0	9.0	5.5
Merged-chr9-104035479-4	chr9	104035000	104036000	+	916.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028721, intron 19 of 26)	intron (NM_028721, intron 19 of 26)	27621.0	NM_025692	66663.0	Mm.224935	NM_025692	ENSMUSG00000032557	Uba5	5730525G14Rik|AW240750|Ube1dc1	ubiquitin-like modifier activating enzyme 5	protein-coding	0.0	1.5	2.5	6.0	1.5	6.0
Merged-chr3-154177922-3	chr3	154177425	154178425	+	916.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081263, intron 2 of 21)	intron (NM_001081263, intron 2 of 21)	152635.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101930711-2	chr5	101930211	101931211	+	916.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 16 of 66)	intron (NM_172882, intron 16 of 66)	139210.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27804820-4	chr7	27804322	27805322	+	916.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2374.0	NM_027703	71163.0	Mm.440493	NM_027703	ENSMUSG00000030604	Zfp626	4833408D11Rik|4933426I21Rik|7630402I04Rik	zinc finger protein 626	protein-coding	12.0	25.0	14.0	4.5	16.0	14.0
Merged-chr1-119498893-5	chr1	119498402	119499402	+	916.6333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022327, intron 1 of 4)	ID_B1|SINE|B4	5880.0	NM_022327	64143.0	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118086087-4	chr10	118085645	118086645	+	916.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G1|LTR|ERVL-MaLR	-55642.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	202.0	425.5	293.5	165.5	394.0	311.5
Merged-chr13-30566988-4	chr13	30566473	30567473	+	916.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21657.0	NM_025710	66694.0	Mm.181933	NM_025710	ENSMUSG00000038462	Uqcrfs1	4430402G14Rik|AI875505	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103673829-3	chr2	103673338	103674338	+	916.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	87432.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19209923-4	chr10	19209432	19210432	+	916.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42694.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.0	0.0	5.0	0.0	1.5	0.5
Merged-chr1-65060286-4	chr1	65059794	65060794	+	916.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3146.0	NM_007776	12967.0	Mm.425031	NM_007776	ENSMUSG00000067299	Crygd	Aey4|Cryg-1|DGcry-1|Lop12	crystallin, gamma D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106581662-4	chr8	106581162	106582162	+	916.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-5481.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3423174-4	chr19	3422677	3423677	+	916.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8633.0	NM_010253	14419.0	Mm.4655	NM_010253	ENSMUSG00000024907	Gal	Galn	galanin	protein-coding	0.5	9.0	5.5	5.0	6.0	0.0
Merged-chr19-46340982-4	chr19	46340485	46341485	+	916.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1777.0	NR_030468	751550.0		NR_030468	ENSMUSG00000070127	Mir146b	Mirn146b|mir-146b	microRNA 146b	ncRNA	0.0	0.0	4.0	0.0	0.5	2.0
Merged-chr2-30084320-4	chr2	30083814	30084814	+	916.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153805, intron 9 of 21)	MTD|LTR|ERVL-MaLR	5616.0	NM_153805	263803.0	Mm.233843	NM_153805	ENSMUSG00000026785	Pkn3	AW209115|BC034126	protein kinase N3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-76525305-4	chr5	76524806	76525806	+	916.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-4001.0	NM_001359372	69940.0	Mm.403233	NM_027270	ENSMUSG00000036435	Exoc1	2810407P21Rik|A730011E05Rik|SEC3|Sec3l1|Sec3p	exocyst complex component 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31108171-4	chr6	31107675	31108675	+	916.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-45082.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108408337-4	chr6	108407847	108408847	+	916.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 35 of 61)	intron (NM_010585, intron 35 of 61)	-81396.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.0	0.0	0.0	0.0	0.0	9.5
Merged-chr2-180120272-4	chr2	180119758	180120758	+	916.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144500, intron 1 of 13)	intron (NM_144500, intron 1 of 13)	892.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30717432-4	chr2	30716926	30717926	+	916.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER115|DNA|hAT-Tip100	-3784.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-26359034-4	chr15	26358528	26359528	+	916.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310774, intron 2 of 2)	intron (NM_001310774, intron 2 of 2)	49980.0	NM_001310774	211147.0	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-164088073-4	chr1	164087587	164088587	+	916.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26011.0	NM_011346	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85169591-4	chr12	85169032	85170032	+	916.520874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001271705, exon 5 of 7)	exon (NM_001271705, exon 5 of 7)	6450.0	NM_001271705	18654.0	Mm.4809	NM_008827	ENSMUSG00000004791	Pgf	AI854365|PIGF|Plgf	placental growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8505028-4	chr10	8504616	8505616	+	916.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 1 of 7)	intron (NM_177387, intron 1 of 7)	13709.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4081693-2	chr16	4081193	4082193	+	916.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3883.0	NM_026508	68015.0	Mm.123366	NM_026508	ENSMUSG00000005981	Trap1	2410002K23Rik|HSP75	TNF receptor-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17775690-2	chr10	17775190	17776190	+	916.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20529.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	12.5	23.0	15.0	2.0	21.0	10.0
Merged-chr5-99423183-4	chr5	99422676	99423676	+	916.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-170249.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-69386712-2	chr17	69386212	69387212	+	916.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009547, intron 2 of 2)	intron (NM_009547, intron 2 of 2)	2908.0	NM_009547	22666.0	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117835330-2	chr11	117834830	117835830	+	916.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027827, intron 7 of 10)	intron (NM_027827, intron 7 of 10)	-9316.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32501638-2	chr2	32501138	32502138	+	916.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33721.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120083321-4	chr9	120082812	120083812	+	916.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A|LTR|ERVL	-8821.0	NM_007720	12776.0	Mm.442098	NM_007720	ENSMUSG00000042262	Ccr8	C-C|C-C CKR-8|CC-CKR-8|CCR-8|CKR-8|Cmkbr8|mCCR8	chemokine (C-C motif) receptor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70966174-2	chr12	70965674	70966674	+	916.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-8449.0	NM_001310595	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36121560-4	chr17	36121058	36122058	+	916.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046286)	promoter-TSS (NR_046286)	-114.0	NR_046286	15024.0	Mm.426031	NM_010395	ENSMUSG00000079491	H2-T10	H-2T10	histocompatibility 2, T region locus 10	protein-coding	10.0	20.5	13.5	9.0	6.0	3.5
Merged-chr7-105779849-2	chr7	105779349	105780349	+	916.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162943, intron 1 of 20)	B1_Mm|SINE|Alu	7701.0	NM_001162943	233651.0	Mm.334108	NM_001162943	ENSMUSG00000036862	Dchs1	3110041P15Rik|C130033F22Rik|CDH25|FIB1|Gm165|PCDH16	dachsous cadherin related 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-82995571-2	chr3	82995058	82996058	+	916.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-12166.0	NM_133862	99571.0	Mm.16422	NM_133862	ENSMUSG00000033860	Fgg	3010002H13Rik|AI256424	fibrinogen gamma chain	protein-coding	2.0	10.5	1.5	9.5	0.0	3.0
Merged-chr4-134913617-3	chr4	134913120	134914120	+	916.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027935, intron 1 of 6)	B2_Mm2|SINE|B2	1296.0	NM_027935	71817.0	Mm.88349	NM_027935	ENSMUSG00000028822	Tmem50a	3200001F09Rik|CAM|Smp1	transmembrane protein 50A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87038533-3	chr1	87038041	87039041	+	916.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172157, intron 15 of 21)	intron (NM_001172157, intron 15 of 21)	51387.0	NM_007433	11650.0	Mm.195224	NM_007433	ENSMUSG00000026246	Alppl2	Akp5|C77216|D1Ertd816e|EAP	alkaline phosphatase, placental-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-93733778-2	chr11	93733278	93734278	+	916.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	151988.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-56958877-3	chr9	56958365	56959365	+	916.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178374, intron 2 of 8)	intron (NM_178374, intron 2 of 8)	7941.0	NM_178374	66069.0	Mm.220984	NM_178374	ENSMUSG00000055334	Snupn	0610031A09Rik|Rnut1|Snupn1	snurportin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24971453-4	chr7	24970964	24971964	+	916.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010261, intron 3 of 4)	intron (NM_010261, intron 3 of 4)	1264.0	NM_010261	14470.0	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106148938-1	chr9	106148438	106149438	+	916.5	f1_balb.idr	Intergenic	Intergenic	-5186.0	NR_029549	387153.0		NR_029549	ENSMUSG00000065407	Mir135a-1	Mir135a01|Mirn135|Mirn135a-1|mir-135a-1	microRNA 135a-1	ncRNA	7.0	0.0	0.0	0.0	1.5	1.0
Merged-chr10-77270318-2	chr10	77269818	77270818	+	916.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_030262)	TTS (NM_030262)	11018.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75089203-2	chr11	75088703	75089703	+	916.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 13 of 18)	L1MB8|LINE|L1	-23212.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0.0	0.0	3.0	1.0	0.0	0.0
Merged-chr5-113812218-4	chr5	113811701	113812701	+	916.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR6B_Mm|LTR|ERV1	-11849.0	NM_146162	231633.0	Mm.41681	NM_146162	ENSMUSG00000054675	Tmem119	AW208946|BC025600|obif	transmembrane protein 119	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137287190-2	chr5	137286690	137287690	+	916.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1064.0	NM_009599	11423.0	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	0.0	1.0	0.0	4.5	0.0	0.0
Merged-chr7-17059042-3	chr7	17058596	17059596	+	916.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162950, intron 1 of 14)	(TG)n|Simple_repeat|Simple_repeat	-2417.0	NM_016868	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	5.5	11.5	5.0	7.5	10.5	3.5
Merged-chr9-64105488-4	chr9	64105018	64106018	+	916.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11629.0	NM_145835	235435.0	Mm.436581	NM_145835	ENSMUSG00000032401	Lctl	E130104I05Rik|KLPH	lactase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-40979183-4	chr14	40978687	40979687	+	916.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12291.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119004429-3	chr4	119003915	119004915	+	916.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42448.0	NM_133892	100470.0	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86803888-4	chr12	86803371	86804371	+	916.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	69502.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62208530-4	chr4	62208029	62209029	+	916.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290353)	promoter-TSS (NM_001290353)	17.0	NM_001290351	22696.0	Mm.5011	NM_009554	ENSMUSG00000028389	Zfp37	Tzn|Zfp-37	zinc finger protein 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-77170580-4	chr2	77170094	77171094	+	916.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025576)	promoter-TSS (NM_001025576)	41.0	NM_001025576	545428.0	Mm.26579	NM_001025576	ENSMUSG00000044033	Ccdc141	2610301F02Rik|CAMDI	coiled-coil domain containing 141	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64307546-4	chr13	64306981	64307981	+	916.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025370, intron 4 of 5)	MTE-int|LTR|ERVL-MaLR	5229.0	NM_025370	66129.0	Mm.491110	NM_025370	ENSMUSG00000021482	Aaed1	1110018J18Rik|AI849003	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding	8.0	26.5	30.0	63.0	71.0	68.0
Merged-chr5-148634155-3	chr5	148633661	148634661	+	916.400024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81373.0	NM_001359199	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-17255734-4	chr19	17255228	17256228	+	916.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83777.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	15.0	61.5	45.5	35.0	58.0	37.5
Merged-chr10-79986274-8	chr10	79985751	79986751	+	916.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	B1_Mur3|SINE|Alu	-1991.0	NM_001003949	216157.0	Mm.29442	NM_001003949	ENSMUSG00000013858	Tmem259	AC087114.7gm2|ORF61|R32184_3|mFLJ00277	transmembrane protein 259	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10698136-3	chr19	10697597	10698597	+	916.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	intron (NM_001361958, intron 1 of 4)	-2671.0	NM_001361964	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-171358428-3	chr2	171357962	171358962	+	916.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	604337.0	NR_040509	75655.0	Mm.396203	NR_040509	ENSMUSG00000086823	1700028P15Rik	-	RIKEN cDNA 1700028P15 gene	ncRNA	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr3-97761346-4	chr3	97760843	97761843	+	916.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 8 of 46)	intron (NM_001039376, intron 8 of 46)	6671.0	NM_178080	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-90403802-4	chr15	90403277	90404277	+	916.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50067.0	NR_155426	102640415.0	Mm.394352	NR_155426	ENSMUSG00000116204	Gm36480	-	predicted gene, 36480	ncRNA	0.5	0.0	0.0	0.5	0.0	1.0
Merged-chr2-27560964-4	chr2	27560479	27561479	+	916.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45832.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5735108-4	chr11	5734578	5735578	+	916.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361588, intron 1 of 6)	intron (NM_001361588, intron 1 of 6)	6098.0	NM_001361590	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	20.5	58.0	19.0	19.0	28.0	28.0
Merged-chr17-26500473-4	chr17	26499950	26500950	+	916.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	8022.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	1.0	0.0	4.5	8.5	4.0	9.0
Merged-chr1-192536647-4	chr1	192536153	192537153	+	916.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 11 of 11)	intron (NM_144881, intron 11 of 11)	234566.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	1.0	4.0	0.5	4.0	0.0	0.0
Merged-chr8-60964149-4	chr8	60963650	60964650	+	916.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007711, intron 1 of 11)	intron (NM_007711, intron 1 of 11)	-9351.0	NM_173876	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129795542-4	chr4	129795035	129796035	+	916.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24944.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	18.5	25.0	32.5	28.0	26.5	33.5
Merged-chr13-119283614-3	chr13	119283114	119284114	+	916.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125397.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-4120835-3	chr10	4120320	4121320	+	916.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 26 of 27)	intron (NM_001170785, intron 26 of 27)	92300.0	NR_152620	102632515.0	Mm.416995	NR_152620	ENSMUSG00000111266	Gm30570	-	predicted gene, 30570	ncRNA	0.0	0.0	3.0	1.0	0.0	0.0
Merged-chr1-138124216-3	chr1	138123710	138124710	+	916.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111316, intron 2 of 31)	intron (NM_001111316, intron 2 of 31)	50916.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33736936-3	chr2	33736431	33737431	+	916.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 9 of 9)	intron (NM_175184, intron 9 of 9)	-68885.0	NR_045729	320482.0	Mm.442057	NR_045729	ENSMUSG00000086484	Nron	A630071L07Rik|Gm24353	non-protein coding RNA, repressor of NFAT	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27825707-3	chr17	27825211	27826211	+	916.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-5169.0	NM_001271511	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	20.5	64.0	40.5	15.5	85.0	34.5
Merged-chr1-156437980-3	chr1	156437482	156438482	+	916.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 10 of 15)	intron (NM_009230, intron 10 of 15)	-17067.0	NM_001346967	77352.0	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	25.0	79.5	52.0	43.5	120.5	45.5
Merged-chr11-50275075-3	chr11	50274525	50275525	+	916.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 1 of 4)	intron (NM_175334, intron 1 of 4)	17311.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151104970-3	chr1	151104469	151105469	+	916.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-33065.0	NR_038011	402734.0	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19304762-3	chr7	19304270	19305270	+	916.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008036, exon 4 of 4)	3' UTR (NM_008036, exon 4 of 4)	5275.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr2-119787534-4	chr2	119787012	119788012	+	916.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163701)	promoter-TSS (NM_001163701)	25.0	NM_177294	68925.0	Mm.30496	NM_177294	ENSMUSG00000034032	Rpap1	1190005L06Rik|A730023M06Rik|AU041788|AW107702|mKIAA1403	RNA polymerase II associated protein 1	protein-coding	10.0	21.0	19.0	18.5	28.0	28.5
Merged-chr2-128124681-4	chr2	128124147	128125147	+	916.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028765)	TTS (NM_028765)	-1391.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr3-8929962-4	chr3	8929456	8930456	+	916.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001025261, exon 8 of 8)	3' UTR (NM_001025261, exon 8 of 8)	-6099.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-52056343-4	chr16	52055843	52056843	+	916.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	24794.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103843889-5	chr14	103843321	103844321	+	916.286682	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007904)	promoter-TSS (NM_007904)	-120.0	NM_001276296	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118652819-3	chr7	118652281	118653281	+	916.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028930, intron 8 of 17)	intron (NM_028930, intron 8 of 17)	19045.0	NM_028930	74424.0	Mm.11068	NM_028930	ENSMUSG00000030650	Tmc5	4932443L08Rik|AU016085	transmembrane channel-like gene family 5	protein-coding	2.5	8.0	5.0	2.5	11.0	5.0
Merged-chr18-34378595-3	chr18	34378097	34379097	+	916.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-5182.0	NM_007874	13476.0	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-28486606-4	chr6	28486120	28487120	+	916.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 1 of 23)	intron (NM_019776, intron 1 of 23)	6272.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-44052758-3	chr5	44052271	44053271	+	916.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163578, intron 3 of 22)	intron (NM_001163578, intron 3 of 22)	41997.0	NM_001163581	19126.0	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	37.5	88.5	86.5	8.5	8.0	4.5
Merged-chr5-64600098-4	chr5	64599578	64600578	+	916.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045078, intron 3 of 3)	intron (NR_045078, intron 3 of 3)	10621.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	3.0	5.0	15.5	2.0	7.0	6.5
Merged-chr2-167942972-4	chr2	167942478	167943478	+	916.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	10651.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10787343-2	chr16	10786843	10787843	+	916.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013694)	TTS (NM_013694)	1312.0	NM_013694	21959.0	Mm.206798	NM_013694	ENSMUSG00000043050	Tnp2	TP2|Tp-2	transition protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70959009-4	chr14	70958510	70959510	+	916.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302094, intron 3 of 7)	L1_Rod|LINE|L1	68903.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	36.5	107.5	66.0	21.0	56.5	38.5
Merged-chr17-13056357-4	chr17	13055858	13056858	+	916.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4078.0	NM_001013832	436440.0	Mm.335670	NM_001013832	ENSMUSG00000071311	Gpr31b	12-HETER|GPR31c(t)|Gpr31|Gpr31c	G protein-coupled receptor 31, D17Leh66b region	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117444925-4	chr2	117444433	117445433	+	916.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102056.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-46634264-4	chr13	46633754	46634754	+	916.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026056, intron 7 of 12)	intron (NM_026056, intron 7 of 12)	-35268.0	NM_001033192	97863.0	Mm.275934	NM_001033192	ENSMUSG00000069237	Fam8a1	C78339	family with sequence similarity 8, member A1	protein-coding	0.0	1.0	4.0	0.0	1.0	4.5
Merged-chr13-58601456-4	chr13	58600949	58601949	+	916.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022317, intron 1 of 17)	intron (NM_022317, intron 1 of 17)	9428.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0.0	4.0	0.0	0.0	5.5	0.0
Merged-chr12-3906634-3	chr12	3906152	3907152	+	916.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 16 of 17)	intron (NM_153743, intron 16 of 17)	14908.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120539163-4	chr11	120538652	120539652	+	916.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008101)	TTS (NM_008101)	8425.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184484780-5	chr1	184484243	184485243	+	916.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72948.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99000833-5	chr15	99000326	99001326	+	916.2000119999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	14861.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95891245-4	chr13	95890711	95891711	+	916.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	711.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	93.0	281.0	185.0	111.5	217.5	181.5
Merged-chr6-137560608-4	chr6	137560103	137561103	+	916.1875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271588, intron 1 of 20)	intron (NM_001271588, intron 1 of 20)	10406.0	NM_001271595	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-72089123-4	chr9	72088624	72089624	+	916.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011544, intron 3 of 20)	L1MEc|LINE|L1	22077.0	NM_001253862	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr8-117227571-3	chr8	117227113	117228113	+	916.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29406.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145013473-3	chr4	145012967	145013967	+	916.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 67 of 69)	intron (NM_001276465, intron 67 of 69)	120330.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104092957-4	chr3	104092455	104093455	+	916.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133853, intron 3 of 21)	intron (NM_133853, intron 3 of 21)	-124639.0	NR_030676	100125931.0	Mm.400392	NR_030676	ENSMUSG00000089998	Phtf1os	A130049A11Rik	putative homeodomain transcription factor 1, opposite strand	ncRNA	2.5	4.0	0.5	0.0	4.5	0.5
Merged-chr7-67242654-3	chr7	67242107	67243107	+	916.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291195, intron 8 of 10)	L1_Mus1|LINE|L1	19991.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59464627-3	chr4	59464217	59465217	+	916.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-26084.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-75551209-2	chr17	75550709	75551709	+	916.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357860, intron 1 of 6)	intron (NM_001357860, intron 1 of 6)	737.0	NM_133747	72722.0	Mm.24641	NM_133747	ENSMUSG00000002017	Fam98a	2810405J04Rik|AL024114	family with sequence similarity 98, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91871220-2	chr16	91870720	91871720	+	916.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001110275, exon 29 of 29)	3' UTR (NM_001110275, exon 29 of 29)	60410.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126323983-2	chr7	126323483	126324483	+	916.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44062.0	NR_106025	102466797.0		NR_106025	ENSMUSG00000099017	Mir7058	Gm27766|mmu-mir-7058	microRNA 7058	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30626182-4	chr2	30625677	30626677	+	916.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	31133.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4833189-4	chr11	4832668	4833668	+	916.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252253)	promoter-TSS (NM_001252253)	-33.0	NM_001252253	18016.0	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	17.0	28.0	23.0	4.0	42.5	13.0
Merged-chr2-154374220-4	chr2	154373720	154374720	+	916.1375119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1501.0	NM_025876	66971.0	Mm.289427	NM_025876	ENSMUSG00000027487	Cdk5rap1	2310066P17Rik	CDK5 regulatory subunit associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82974162-4	chr11	82973694	82974694	+	916.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26B_MM|LTR|ERVK	10871.0	NR_106144	102466846.0		NR_106144	ENSMUSG00000098840	Mir7679	Gm27908|mmu-mir-7679	microRNA 7679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11203552-4	chr2	11203105	11204105	+	916.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	31223.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-93953744-4	chr15	93953244	93954244	+	916.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26633.0	NR_045737	77248.0	Mm.410768	NR_045737	ENSMUSG00000116360	9430014N10Rik	-	RIKEN cDNA 9430014N10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79030514-6	chr8	79029930	79030930	+	916.1203609999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 1 of 14)	CpG	1993.0	NM_178267	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71980658-3	chr6	71980146	71981146	+	916.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61882.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-43729102-4	chr11	43728584	43729584	+	916.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133795)	TTS (NM_133795)	18889.0	NM_133795	66827.0	Mm.271974	NM_133795	ENSMUSG00000041278	Ttc1	4833412C19Rik|C79328|TPR1	tetratricopeptide repeat domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91696393-4	chr2	91695899	91696899	+	916.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355416, intron 1 of 17)	B4A|SINE|B4	14193.0	NM_145528	51897.0	Mm.28492	NM_145528	ENSMUSG00000027244	Atg13	1110053A20Rik|D2Ertd391e|Harbi1	autophagy related 13	protein-coding	0.0	0.0	5.0	0.0	4.0	3.0
Merged-chr17-34286984-8	chr17	34286483	34287483	+	916.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010378, intron 1 of 4)	intron (NM_010378, intron 1 of 4)	788.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	262.0	777.5	414.5	219.5	566.5	334.5
Merged-chr15-79895302-4	chr15	79894813	79895813	+	916.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347041, intron 1 of 7)	intron (NM_001347041, intron 1 of 7)	290.0	NM_001347041	80287.0	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Gm20117|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	84.5	253.5	128.0	28.5	33.5	49.5
Merged-chr16-76680787-4	chr16	76680287	76681287	+	916.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98305.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5052584-4	chr6	5052071	5053071	+	916.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 3 of 15)	ORR1F|LTR|ERVL-MaLR	141375.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6372398-4	chr4	6371862	6372862	+	916.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	L1MB5|LINE|L1	6682.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	35.5	39.5	42.0	24.0	56.0	58.5
Merged-chr16-33158588-4	chr16	33158073	33159073	+	916.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26498.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-30609312-4	chr15	30608820	30609820	+	916.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-429806.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	28.5	32.5	42.0	15.0	35.5	19.5
Merged-chr11-3910763-4	chr11	3910256	3911256	+	916.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153142, intron 1 of 1)	intron (NM_153142, intron 1 of 1)	3908.0	NM_153142	103710.0	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70847245-4	chr17	70846742	70847742	+	916.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164077)	promoter-TSS (NM_001164077)	-465.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	11.0	24.0	44.5	12.0	45.5	30.5
Merged-chr9-21221713-4	chr9	21221219	21222219	+	916.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	17613.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37561061-4	chr13	37560569	37561569	+	916.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	215724.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	5.0	10.0	2.5	1.5	20.5	7.5
Merged-chr11-114830190-4	chr11	114829637	114830637	+	916.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21395.0	NM_001110337	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46536763-4	chr18	46536219	46537219	+	916.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	-10748.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117172608-4	chr2	117172079	117173079	+	916.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001277256, exon 5 of 5)	3' UTR (NM_001277256, exon 5 of 5)	-12548.0	NR_030440	732489.0		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	0.0	7.5	8.5	2.0	19.5	10.5
Merged-chr6-142571391-3	chr6	142570885	142571885	+	916.022217	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008428, exon 1 of 3)	5' UTR (NM_008428, exon 1 of 3)	229.0	NM_001330363	16523.0	Mm.1482	NM_008428	ENSMUSG00000030247	Kcnj8	AI448900|Kir6.1|gnite|slmbr|sltr|uKATP-1	potassium inwardly-rectifying channel, subfamily J, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51736561-4	chr13	51736104	51737104	+	916.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281880, intron 2 of 16)	intron (NM_001281880, intron 2 of 16)	57143.0	NM_001281880	20354.0	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123432114-4	chr4	123431605	123432605	+	916.0125119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001199136, exon 57 of 98)	exon (NM_001199136, exon 57 of 98)	-20194.0	NM_001167918	442834.0	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-81101579-4	chr3	81101092	81102092	+	916.0125119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	B1F|SINE|Alu	65176.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	32.0	30.0	13.5	17.0	53.0	22.5
Merged-chr19-6975817-2	chr19	6975317	6976317	+	916.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008889, intron 1 of 3)	intron (NM_008889, intron 1 of 3)	769.0	NM_008889	18938.0	Mm.140	NM_008889	ENSMUSG00000056612	Ppp1r14b	AOM172|PHI-1|PLCB3N|Png	protein phosphatase 1, regulatory (inhibitor) subunit 14B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35122374-2	chr7	35121874	35122874	+	916.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001287523)	TTS (NM_001287523)	3081.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	0.0	1.0	0.0	0.0	1.0	0.0
Merged-chr10-106751582-2	chr10	106751082	106752082	+	916.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359698, intron 2 of 28)	Lx6|LINE|L1	119054.0	NM_001359686	327814.0	Mm.391424	NM_177373	ENSMUSG00000053825	Ppfia2	5330438O12|B230207K17Rik|E130120L08Rik|mKIAA4112	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120074841-7	chr1	120074405	120075405	+	916.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1125.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	175.0	253.0	230.5	88.5	193.5	170.5
Merged-chr1-172578274-1	chr1	172577774	172578774	+	916.0	f0_c57.idr	Intergenic	Intergenic	12294.0	NM_029084	74748.0	Mm.179812	NM_029084	ENSMUSG00000053318	Slamf8	5830408F06Rik|Blame|SBBI42	SLAM family member 8	protein-coding	0.0	27.0	4.5	2.0	0.0	1.0
Merged-chr17-47759826-3	chr17	47759326	47760326	+	916.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	21895.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	17.0	31.0	22.0	16.5	40.0	34.5
Merged-chr4-105239775-3	chr4	105239259	105240259	+	916.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82412.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.0	7.0	5.0	3.5	11.5	6.5
Merged-chr8-66388883-4	chr8	66388378	66389378	+	916.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 5 of 7)	intron (NM_175188, intron 5 of 7)	2577.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100211233-1	chr12	100210733	100211733	+	916.0	f0_balb.idr	Intergenic	Intergenic	11089.0	NM_001313934	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10919813-2	chr17	10919313	10920313	+	916.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317726, intron 1 of 6)	intron (NM_001317726, intron 1 of 6)	79454.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66104635-1	chr5	66104135	66105135	+	916.0	f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	L2c|LINE|L2	-6456.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	10.5	1.0	9.0	2.5	13.0	6.5
Merged-chr16-28911250-4	chr16	28910756	28911756	+	916.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177718, intron 1 of 1)	intron (NM_177718, intron 1 of 1)	18442.0	NM_177718	239796.0	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding	3.0	9.0	6.5	0.0	6.0	9.0
Merged-chr16-25061862-3	chr16	25061367	25062367	+	916.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040374, intron 1 of 2)	intron (NR_040374, intron 1 of 2)	2228.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50214671-2	chr11	50214171	50215171	+	916.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3851.0	NM_011018	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97927535-2	chr3	97927035	97928035	+	916.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2638.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67186430-4	chr18	67185938	67186938	+	916.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177137, intron 4 of 11)	intron (NM_177137, intron 4 of 11)	-18921.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	5.0	11.0	13.0	55.5	55.0	63.5
Merged-chr4-133678625-2	chr4	133678169	133679169	+	916.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001080819)	TTS (NM_001080819)	-5503.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	2.5	11.5	12.5	14.0	12.5	8.5
Merged-chr15-86192245-2	chr15	86191745	86192745	+	916.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6104.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150490025-1	chr4	150489525	150490525	+	916.0	f1_balb.idr	intron (NM_001085492, intron 7 of 22)	intron (NM_001085492, intron 7 of 22)	162149.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	6.0	4.0	10.0	33.5	15.5	9.5
Merged-chr4-32040155-1	chr4	32039655	32040655	+	916.0	f1_balb.idr	Intergenic	Intergenic	76048.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	19.5	22.0	24.0	7.0	2.0	12.0
Merged-chr1-152795858-2	chr1	152795358	152796358	+	916.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4295.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30622296-2	chr14	30621796	30622796	+	916.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	3912.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-97002482-3	chr5	97001995	97002995	+	916.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 1 of 15)	intron (NM_080708, intron 1 of 15)	4806.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	1.0	3.0	8.5	5.5	4.5	11.0
Merged-chr6-29024309-2	chr6	29023809	29024809	+	916.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1690.0	NR_029567	387237.0		NR_029567	ENSMUSG00000065469	Mir129-1	Mirn129-1|Mirn129b|miR-129b|mir-129-1	microRNA 129-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-142053401-2	chr4	142052901	142053901	+	916.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-30897.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138754451-2	chr5	138753951	138754951	+	916.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030565)	promoter-TSS (NM_030565)	-630.0	NM_030565	80752.0	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-21286841-3	chr12	21286327	21287327	+	916.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008403)	promoter-TSS (NM_008403)	530.0	NM_018813	54451.0	Mm.356778	NM_018813	ENSMUSG00000054309	Cpsf3	-	cleavage and polyadenylation specificity factor 3	protein-coding	159.5	627.5	412.5	140.5	556.5	325.5
Merged-chr8-115697775-3	chr8	115697300	115698300	+	916.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9094.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-51305548-5	chr2	51304975	51305975	+	916.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63644.0	NR_040636	329404.0	Mm.417725	NR_040636	ENSMUSG00000086349	Gm13497	A730015I17	predicted gene 13497	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-151369581-2	chr5	151369081	151370081	+	916.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045700, intron 1 of 3)	intron (NR_045700, intron 1 of 3)	906.0	NR_045699	625175.0	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35127783-2	chr17	35127283	35128283	+	916.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_033477, exon 3 of 3)	exon (NM_033477, exon 3 of 3)	1381.0	NM_033477	114585.0	Mm.42070	NM_033477	ENSMUSG00000043311	D17H6S53E	G4|NG34	DNA segment, Chr 17, human D6S53E	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr12-3982046-2	chr12	3981546	3982546	+	916.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001082483, exon 9 of 23)	exon (NM_001082483, exon 9 of 23)	27101.0	NM_001278583	18976.0	Mm.277996	NM_008895	ENSMUSG00000020660	Pomc	ACTH|BE|Beta-LPH|Clip|Gamma-LPH|Npp|Pomc-1|Pomc1|alpha-MSH|alphaMSH|beta-MSH|gamma-MSH	pro-opiomelanocortin-alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116063262-4	chr9	116062778	116063778	+	916.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028638, intron 14 of 14)	ORR1E|LTR|ERVL-MaLR	112085.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76232427-1	chr16	76231927	76232927	+	916.0	f0_balb.idr	Intergenic	Intergenic	109814.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104260533-2	chr9	104260033	104261033	+	916.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 1 of 56)	intron (NM_001359740, intron 1 of 56)	2397.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-63047264-3	chr11	63046792	63047792	+	916.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-14367.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35394571-3	chr17	35394047	35395047	+	916.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_051981, exon 2 of 3)	non-coding (NR_051981, exon 2 of 3)	448.0	NR_051981	15016.0	Mm.439648	NR_051981	ENSMUSG00000055413	H2-Q5	H-2Q5|Qa-5|Qa5|Qat-5	histocompatibility 2, Q region locus 5	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21513166-2	chr9	21512666	21513666	+	916.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-2932.0	NR_136911	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-3183927-3	chr6	3183411	3184411	+	916.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104608.0	NR_036696	667335.0	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-43575176-3	chr10	43574681	43575681	+	916.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3988.0	NM_009846	12484.0	Mm.29742	NM_009846	ENSMUSG00000047139	Cd24a	Cd24|HSA|Ly-52|nectadrin	CD24a antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86575761-2	chr11	86575261	86576261	+	916.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	8397.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10783175-2	chr16	10782675	10783675	+	916.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001271603)	TTS (NM_001271603)	2361.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5724208-2	chr19	5723708	5724708	+	916.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114595, intron 1 of 17)	intron (NM_001114595, intron 1 of 17)	2109.0	NM_001114595	114601.0	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	7.5	18.0	7.0	2.0	5.5	11.5
Merged-chr3-65905780-3	chr3	65905276	65906276	+	916.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52473.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	6.0	10.5	2.5	2.0	17.0	3.5
Merged-chr10-40076532-2	chr10	40076032	40077032	+	916.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028247, exon 3 of 3)	3' UTR (NM_028247, exon 3 of 3)	-51264.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67036372-4	chr10	67035894	67036894	+	915.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 3 of 7)	intron (NM_178606, intron 3 of 7)	31319.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106953777-3	chr8	106953268	106954268	+	915.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009229, intron 1 of 6)	intron (NM_009229, intron 1 of 6)	18018.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119968242-7	chr4	119967704	119968704	+	915.9428710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	153526.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	21.5	46.0	41.0	38.0	53.5	45.0
Merged-chr11-37136614-4	chr11	37136116	37137116	+	915.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-192375.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	6.5	4.5	4.5	2.5	3.5	8.0
Merged-chr7-142372159-4	chr7	142371608	142372608	+	915.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347541, intron 1 of 2)	CpG	151.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	14.5	19.5	12.5	2.0	5.5	0.5
Merged-chr14-61774901-4	chr14	61774402	61775402	+	915.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-92529.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	3.0	10.0	7.5	9.0	25.5	11.5
Merged-chr15-59831690-4	chr15	59831180	59832180	+	915.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-36721.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	24.0	41.5	35.0	22.5	46.0	28.0
Merged-chr10-59283378-4	chr10	59282873	59283873	+	915.895874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-39923.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42144749-4	chr19	42144261	42145261	+	915.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2628.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	1.0	0.0	0.0	1.0	1.0	0.0
Merged-chr13-107676996-4	chr13	107676506	107677506	+	915.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10391.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40829168-4	chr4	40828738	40829738	+	915.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022305, intron 1 of 5)	B2_Mm2|SINE|B2	20900.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-47690799-4	chr8	47690295	47691295	+	915.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15636.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43512162-4	chr7	43511622	43512622	+	915.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6184.0	NM_028737	74054.0	Mm.195732	NM_028737	ENSMUSG00000013353	4931406B18Rik	4930538L19Rik	RIKEN cDNA 4931406B18 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107855764-4	chr13	107855249	107856249	+	915.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	MTC|LTR|ERVL-MaLR	34315.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	8.5	10.5	10.5	3.0	4.0	10.5
Merged-chr6-121191792-4	chr6	121191291	121192291	+	915.837524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304773, intron 4 of 4)	intron (NM_001304773, intron 4 of 4)	8124.0	NM_001304773	74043.0	Mm.491240	NM_028730	ENSMUSG00000067825	Pex26	4632428M11Rik	peroxisomal biogenesis factor 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55815075-2	chr14	55814575	55815575	+	915.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-9720.0	NM_001168346	73181.0	Mm.27908	NM_023699	ENSMUSG00000023411	Nfatc4	3110041H08Rik|AW107667|AW546455|Nfat3	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-72275400-4	chr9	72274846	72275846	+	915.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146224, intron 1 of 21)	CpG	458.0	NM_001311105	235469.0	Mm.242791	NM_146224	ENSMUSG00000038535	Zfp280d	A930005F02Rik|BC027163|Suhw4|ZNF634|Znf280d	zinc finger protein 280D	protein-coding	7.0	74.0	45.5	11.5	28.5	16.0
Merged-chr16-30835938-3	chr16	30835438	30836438	+	915.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER77|LTR|ERVL	236215.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-17916695-3	chr14	17916204	17917204	+	915.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-64940.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44511227-3	chr10	44510732	44511732	+	915.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52484.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60285122-3	chr10	60284627	60285627	+	915.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146124, intron 1 of 13)	intron (NM_001146124, intron 1 of 13)	666.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-34510574-4	chr4	34510073	34511073	+	915.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-40042.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40750388-3	chr9	40749888	40750888	+	915.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	-50885.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.0	0.0	0.0	0.0	5.0	0.5
Merged-chr14-27336627-7	chr14	27336163	27337163	+	915.8214109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	626.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11518549-4	chr19	11518071	11519071	+	915.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027209)	promoter-TSS (NM_027209)	12.0	NM_027209	69774.0	Mm.436639	NM_027209	ENSMUSG00000024677	Ms4a6b	1810027D10Rik	membrane-spanning 4-domains, subfamily A, member 6B	protein-coding	73.0	103.0	92.0	46.5	95.0	66.0
Merged-chr15-83035044-2	chr15	83034544	83035544	+	915.7999880000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1647.0	NM_001271411	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0.0	0.0	2.0	8.5	0.0	2.5
Merged-chr2-122070184-4	chr2	122069682	122070682	+	915.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145531, intron 26 of 39)	intron (NM_145531, intron 26 of 39)	41599.0	NM_001256055	100042807.0	Mm.329403	NM_001256055	ENSMUSG00000043424	Eif3j2	Eif3j-2|Gm9781|eIF3 p35|eIF3j-B	eukaryotic translation initiation factor 3, subunit J2	protein-coding	5.5	2.0	7.0	3.0	3.5	8.5
Merged-chr15-96566986-4	chr15	96566447	96567447	+	915.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75015.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-39011939-3	chr13	39011437	39012437	+	915.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41B|LTR|ERVL	-51062.0	NM_001170431	108652.0	Mm.255506	NM_134060	ENSMUSG00000021432	Slc35b3	4921526O06Rik|AI428480|CGI-19|PABST2|PAPST2	solute carrier family 35, member B3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57094520-2	chr17	57094020	57095020	+	915.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_033508, intron 3 of 3)	B3|SINE|B2	-6738.0	NM_009451	22153.0	Mm.7420	NM_009451	ENSMUSG00000062591	Tubb4a	AI325297|M(beta)4|Tubb|Tubb4	tubulin, beta 4A class IVA	protein-coding	8.0	3.5	7.5	1.5	5.5	7.5
Merged-chr16-91881336-2	chr16	91880836	91881836	+	915.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	50294.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	2.5	1.0	1.5	0.0	8.0	0.0
Merged-chr6-125274974-4	chr6	125274471	125275471	+	915.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	9446.0	NR_015527	73870.0	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	0.0	0.0	2.0	0.0	0.0	5.0
Merged-chr8-126483170-3	chr8	126482692	126483692	+	915.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8127.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45700145-2	chr7	45699639	45700639	+	915.75	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009800, exon 1 of 9)	5' UTR (NM_009800, exon 1 of 9)	172.0	NM_009800	12348.0	Mm.27736	NM_009800	ENSMUSG00000003273	Car11	Ca11	carbonic anhydrase 11	protein-coding	3.0	1.0	0.0	1.5	1.0	1.0
Merged-chr4-53134271-4	chr4	53133775	53134775	+	915.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 2 of 49)	intron (NM_013454, intron 2 of 49)	25620.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14056177-4	chr2	14055680	14056680	+	915.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013935)	promoter-TSS (NM_013935)	-145.0	NM_013935	30963.0	Mm.241205	NM_013935	ENSMUSG00000063275	Hacd1	Ptpla	3-hydroxyacyl-CoA dehydratase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96738177-4	chr10	96737670	96738670	+	915.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121169.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-7088100-2	chr1	7087600	7088600	+	915.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183028)	promoter-TSS (NM_183028)	-820.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43527304-4	chr19	43526763	43527763	+	915.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2658.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr12-85479600-12	chr12	85479070	85480070	+	915.736084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5680.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-59475789-4	chr1	59475279	59476279	+	915.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6368.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	20.0	31.5	45.5	7.5	29.5	40.5
Merged-chr7-30761965-3	chr7	30761463	30762463	+	915.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1793.0	NM_001166173	73712.0	Mm.30138	NM_028618	ENSMUSG00000060962	Dmkn	1110014F24Rik|AW561900|C130074A08|SK30|SK89|cI-36	dermokine	protein-coding	0.0	0.5	0.0	0.0	3.5	2.5
Merged-chr8-40995071-4	chr8	40994583	40995583	+	915.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 12 of 13)	G-rich|Low_complexity|Low_complexity	-22385.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	25.0	27.5	12.5	20.0	24.5	19.5
Merged-chr10-95210887-4	chr10	95210374	95211374	+	915.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	-65049.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-12108553-4	chr2	12108075	12109075	+	915.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_138462, exon 31 of 31)	non-coding (NR_138462, exon 31 of 31)	-192671.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171011861-4	chr1	171011361	171012361	+	915.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7065.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91725694-2	chr2	91725194	91726194	+	915.6999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4444.0	NM_172669	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	8.5	13.5	9.0	8.0	31.0	14.5
Merged-chr7-127750719-4	chr7	127750219	127751219	+	915.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172748, intron 5 of 10)	intron (NM_172748, intron 5 of 10)	3944.0	NM_172748	233902.0	Mm.259353	NM_172748	ENSMUSG00000030811	Fbxl19	6030430O11|BC059812|Fbl19	F-box and leucine-rich repeat protein 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97247348-4	chr15	97246801	97247801	+	915.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164563)	promoter-TSS (NM_001164563)	-14.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132483172-4	chr4	132482675	132483675	+	915.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19254.0	NM_026039	67219.0	Mm.45929	NM_026039	ENSMUSG00000066042	Med18	2810046C01Rik	mediator complex subunit 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6337688-4	chr15	6337187	6338187	+	915.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	37898.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-85288008-3	chr13	85287521	85288521	+	915.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145452, intron 1 of 24)	intron (NM_145452, intron 1 of 24)	1465.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108405416-3	chr6	108404924	108405924	+	915.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010585, exon 34 of 62)	exon (NM_010585, exon 34 of 62)	-84319.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-7844023-2	chr6	7843523	7844523	+	915.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1201.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77411488-4	chr11	77411012	77412012	+	915.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291190, intron 4 of 13)	intron (NM_001291190, intron 4 of 13)	-52401.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89257651-3	chr6	89257125	89258125	+	915.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie8|DNA|hAT-Charlie	28100.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90853375-3	chr5	90852864	90853864	+	915.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37881.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0.5	19.0	12.0	13.5	58.5	44.0
Merged-chr11-95337445-3	chr11	95336940	95337940	+	915.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172543, intron 1 of 7)	CpG	422.0	NM_172543	215512.0	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14885942-3	chr8	14885409	14886409	+	915.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2627.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.0	3.5	0.0	0.0	0.0	0.0
Merged-chr4-63396914-3	chr4	63396428	63397428	+	915.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 2 of 21)	intron (NM_001045514, intron 2 of 21)	1312.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98817443-4	chr13	98816933	98817933	+	915.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-1984.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	4.0	11.0	25.5	3.5	11.0	26.5
Merged-chr13-49052691-2	chr13	49052191	49053191	+	915.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_029361, exon 24 of 28)	exon (NM_029361, exon 24 of 28)	84579.0	NR_015601	68128.0	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-97530760-2	chr13	97530260	97531260	+	915.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29240.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56132832-4	chr17	56132269	56133269	+	915.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013662, exon 2 of 17)	exon (NM_013662, exon 2 of 17)	1083.0	NM_013662	20359.0	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101153605-2	chr15	101153105	101154105	+	915.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20467.0	NM_007395	11479.0	Mm.308467	NM_007395	ENSMUSG00000000532	Acvr1b	6820432J04|ALK-4|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding	29.5	22.5	21.0	16.0	15.0	7.0
Merged-chr11-106790548-2	chr11	106790048	106791048	+	915.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166685, intron 1 of 18)	intron (NM_001166685, intron 1 of 18)	1296.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80435844-3	chr12	80435378	80436378	+	915.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177267, intron 1 of 8)	intron (NM_177267, intron 1 of 8)	723.0	NM_177267	320808.0	Mm.220310	NM_177267	ENSMUSG00000049106	Dcaf5	9430020B07Rik|AI325023|AI430035|AI848110|AW124614|BCRG2|BCRP2|Wdr22	DDB1 and CUL4 associated factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39275264-4	chr6	39274755	39275755	+	915.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68482.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44646062-4	chr13	44645569	44646569	+	915.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-84705.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3129755-5	chr11	3129271	3130271	+	915.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_003517, exon 6 of 7)	non-coding (NR_003517, exon 6 of 7)	5750.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156850678-4	chr2	156850179	156851179	+	915.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291124, intron 2 of 3)	intron (NM_001291124, intron 2 of 3)	10672.0	NM_173396	228839.0	Mm.315625	NM_173396	ENSMUSG00000062175	Tgif2	4921501K24|5730599O09Rik|C80753|C81206	TGFB-induced factor homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58017553-3	chr16	58017045	58018045	+	915.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-262808.0	NM_007739	12837.0	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding	0.0	8.5	0.0	5.5	8.5	8.5
Merged-chr9-44882205-3	chr9	44881718	44882718	+	915.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357549)	promoter-TSS (NM_001357549)	-944.0	NM_001081049	214162.0	Mm.2389	NM_001081049	ENSMUSG00000002028	Kmt2a	6430520K01|ALL-1|All1|Cxxc7|HRX|HTRX1|Mll|Mll1|mKIAA4050	lysine (K)-specific methyltransferase 2A	protein-coding	0.5	0.0	6.0	4.0	3.5	7.0
Merged-chr10-111439678-3	chr10	111439191	111440191	+	915.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BC1_Mm|scRNA|scRNA	-33536.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72051947-3	chr6	72051443	72052443	+	915.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9415.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-33600338-8	chr8	33599869	33600869	+	915.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017374, intron 1 of 6)	intron (NM_017374, intron 1 of 6)	748.0	NM_017374	19053.0	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	55.0	95.5	113.5	6.0	40.0	28.0
Merged-chr2-118905595-4	chr2	118905112	118906112	+	915.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045523, intron 1 of 6)	intron (NM_001045523, intron 1 of 6)	3997.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	21.0	5.5	3.5	3.0	14.0	5.5
Merged-chr16-50457177-4	chr16	50456696	50457696	+	915.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24730.0	NM_001347240	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59265329-4	chr10	59264840	59265840	+	915.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43418.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83850895-7	chr17	83850318	83851318	+	915.535706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_155490)	TTS (NR_155490)	3600.0	NR_155490	320021.0	Mm.379475	NR_155490		C430042M11Rik	-	RIKEN cDNA C430042M11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34250867-4	chr13	34250368	34251368	+	915.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	87904.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120170486-4	chr1	120169988	120170988	+	915.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172074, intron 4 of 4)	intron (NM_001172074, intron 4 of 4)	49301.0	NM_001172074	73103.0	Mm.271602	NM_028439	ENSMUSG00000026388	3110009E18Rik	-	RIKEN cDNA 3110009E18 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80346402-3	chr7	80345902	80346902	+	915.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026812)	TTS (NM_026812)	3265.0	NM_026812	68695.0	Mm.21171	NM_026812	ENSMUSG00000030532	Hddc3	1110033O09Rik|C86475|MESH1	HD domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161360202-2	chr1	161359702	161360702	+	915.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35236.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	15.5	14.5	24.5	5.0	13.5	26.0
Merged-chr7-67459289-2	chr7	67458789	67459789	+	915.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86431.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	36.5	72.0	49.5	23.0	48.0	70.5
Merged-chr14-73098922-2	chr14	73098422	73099422	+	915.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43588.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-139281604-2	chr3	139281104	139282104	+	915.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198659, intron 6 of 13)	intron (NM_198659, intron 6 of 13)	75711.0	NM_198659	381476.0	Mm.188334	NM_198659	ENSMUSG00000047940	Stpg2	B930007M17Rik|Gm1017	sperm tail PG rich repeat containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128728904-4	chr7	128728402	128729402	+	915.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145955, intron 1 of 15)	L1MD|LINE|L1	11527.0	NM_145955	210711.0	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110708015-2	chr12	110707515	110708515	+	915.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CACG)n|Simple_repeat|Simple_repeat	-11620.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97426618-2	chr6	97426118	97427118	+	915.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	32668.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60681072-4	chr18	60680549	60681549	+	915.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17639.0	NR_045401	328963.0	Mm.417203	NR_045401		G630071F17Rik	G630071F17	RIKEN cDNA G630071F17 gene	ncRNA	1.0	2.5	5.0	1.0	3.5	4.0
Merged-chr14-103715694-2	chr14	103715194	103716194	+	915.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16262.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-65642930-2	chr7	65642430	65643430	+	915.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-1968.0	NM_172310	272396.0	Mm.35127	NM_172310	ENSMUSG00000030515	Tarsl2	A530046H20Rik	threonyl-tRNA synthetase-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4403022-2	chr8	4402522	4403522	+	915.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53434.0	NM_009138	20300.0	Mm.7275	NM_009138	ENSMUSG00000023235	Ccl25	A130072A22Rik|AI852536|CKb15|Scya25|TECK	chemokine (C-C motif) ligand 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41021395-2	chr4	41020895	41021895	+	915.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023739, intron 19 of 23)	B4|SINE|B4	26741.0	NM_007473	11832.0	Mm.8728	NM_007473	ENSMUSG00000028427	Aqp7	AQP7L|AQPap	aquaporin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26466392-2	chr17	26465892	26466892	+	915.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42080.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	37.0	69.5	31.5	6.5	13.5	25.5
Merged-chr8-111596004-4	chr8	111595500	111596500	+	915.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168623, intron 1 of 4)	intron (NM_001168623, intron 1 of 4)	34322.0	NM_027570	52815.0	Mm.27589	NM_027570	ENSMUSG00000031958	Ldhd	4733401P21Rik|D8Bwg1320e	lactate dehydrogenase D	protein-coding	0.5	8.5	5.5	0.5	8.5	5.5
Merged-chr6-116458981-4	chr6	116458475	116459475	+	915.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009662, intron 1 of 13)	intron (NM_009662, intron 1 of 13)	2203.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22860839-2	chr8	22860339	22861339	+	915.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081149, intron 1 of 17)	intron (NM_001081149, intron 1 of 17)	1300.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-28478816-3	chr2	28478299	28479299	+	915.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10733.0	NM_001166031	118451.0	Mm.294951	NM_080452	ENSMUSG00000035772	Mrps2	1500019M10Rik	mitochondrial ribosomal protein S2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-102678710-4	chr13	102678208	102679208	+	915.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14839.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124414549-4	chr6	124414054	124415054	+	915.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360570, intron 1 of 14)	intron (NM_001360570, intron 1 of 14)	309.0	NM_001277330	19305.0	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1-BP|PTS1R|PXR1P|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30633267-4	chr13	30632764	30633764	+	915.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18221.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120950386-2	chr4	120949886	120950886	+	915.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005788, intron 1 of 5)	MIRb|SINE|MIR	1315.0	NM_001005788	381549.0	Mm.331840	NM_001005788	ENSMUSG00000064141	Zfp69	Gm1029|Krab2|Zfp63	zinc finger protein 69	protein-coding	3.5	46.5	28.5	15.0	49.0	31.0
Merged-chr4-132946153-2	chr4	132945649	132946649	+	915.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-23598.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	60.5	149.5	110.5	67.0	199.5	101.5
Merged-chr14-60738077-2	chr14	60737577	60738577	+	915.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310594, intron 1 of 9)	Lx9|LINE|L1	5173.0	NM_001310594	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	0.0	1.5	7.5	0.0	2.0	8.0
Merged-chr1-172402868-2	chr1	172402368	172403368	+	915.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	26337.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	2.0	6.0	2.5	3.0	2.0	2.0
Merged-chr10-51405340-4	chr10	51404862	51405862	+	915.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75250.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70841285-4	chr8	70840777	70841777	+	915.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_032397)	TTS (NM_032397)	-1557.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	3.5	18.0	12.5	6.0	16.5	10.0
Merged-chr17-24549013-7	chr17	24548497	24549497	+	915.4761960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013630)	promoter-TSS (NM_013630)	-953.0	NM_013630	18763.0	Mm.30435	NM_013630	ENSMUSG00000032855	Pkd1	PC1|mFLJ00285	polycystin 1, transient receptor poteintial channel interacting	protein-coding	18.5	35.0	27.0	7.0	33.5	27.0
Merged-chr3-103169970-4	chr3	103169479	103170479	+	915.462524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177857)	TTS (NM_177857)	-1676.0	NM_026602	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19669104-4	chr10	19668598	19669598	+	915.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43489.0	NM_172786	237313.0	Mm.234667	NM_172786	ENSMUSG00000020007	Il20ra	E230031K19	interleukin 20 receptor, alpha	protein-coding	11.5	2.0	1.0	1.5	0.0	1.5
Merged-chr16-70329257-4	chr16	70328766	70329766	+	915.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 1 of 15)	intron (NM_028803, intron 1 of 15)	15317.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	14.0	55.5	42.5	20.0	35.5	29.5
Merged-chr8-22928771-4	chr8	22928247	22929247	+	915.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081149, intron 13 of 17)	intron (NM_001081149, intron 13 of 17)	-46089.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117330063-3	chr8	117329571	117330571	+	915.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-19099.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-71873110-3	chr7	71872634	71873634	+	915.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36561.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	5.5	16.0	4.0	10.5	38.5	25.0
Merged-chr19-55807990-3	chr19	55807498	55808498	+	915.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	(T)n|Simple_repeat|Simple_repeat	66188.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.0	3.0	14.5	6.5	6.0	9.5
Merged-chr4-149144608-4	chr4	149144084	149145084	+	915.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6984.0	NM_027263	69928.0	Mm.260893	NM_027263	ENSMUSG00000073705	Cenps	2610040C18Rik|2810407L01Rik|Apitd1|CENP-S	centromere protein S	protein-coding	7.0	7.0	7.5	0.5	19.0	13.0
Merged-chr7-137405397-4	chr7	137404888	137405888	+	915.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029886, intron 1 of 3)	L1MEc|LINE|L1	5368.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45537727-2	chr19	45537227	45538227	+	915.4166869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22837.0	NM_001330506	56626.0	Mm.46509	NM_020032	ENSMUSG00000025218	Poll	1110003P06Rik|AV007317	polymerase (DNA directed), lambda	protein-coding	0.0	0.0	0.5	0.5	0.0	0.0
Merged-chr14-8108359-3	chr14	8107887	8108887	+	915.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	10176.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79029141-4	chr12	79028643	79029643	+	915.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181073)	promoter-TSS (NM_181073)	-20.0	NM_181073	211945.0	Mm.478321	NM_181073	ENSMUSG00000060716	Plekhh1	AV308913|C77772|D630024D12Rik|mKIAA1200	pleckstrin homology domain containing, family H (with MyTH4 domain) member 1	protein-coding	4.0	0.0	1.5	15.5	19.5	9.0
Merged-chr19-12009678-4	chr19	12009165	12010165	+	915.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27075.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	1.0	13.0	5.0	10.0	5.5	6.5
Merged-chr6-129548244-4	chr6	129547787	129548787	+	915.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-15003.0	NR_045270	100504641.0	Mm.398286	NR_045270	ENSMUSG00000097675	1700101I11Rik	-	RIKEN cDNA 1700101I11 gene	ncRNA	5.0	1.0	1.5	0.0	0.0	0.0
Merged-chr3-87804245-3	chr3	87803765	87804765	+	915.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011832, intron 6 of 21)	intron (NM_011832, intron 6 of 21)	7314.0	NM_011832	23920.0	Mm.42041	NM_011832	ENSMUSG00000005640	Insrr	Irr	insulin receptor-related receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75642527-4	chr7	75642016	75643016	+	915.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	186982.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	11.0	17.5	13.0	31.0	32.5	40.5
Merged-chr9-121928676-4	chr9	121928191	121929191	+	915.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4c|LINE|L1	-8584.0	NR_033553	69430.0	Mm.482910	NR_033553	ENSMUSG00000043773	1700048O20Rik	1700022O21Rik	RIKEN cDNA 1700048O20 gene	ncRNA	3.0	0.0	5.0	0.0	1.5	1.5
Merged-chr3-79178935-4	chr3	79178400	79179400	+	915.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33025.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	10.0	48.5	35.5	11.5	23.5	24.5
Merged-chr11-107319960-2	chr11	107319460	107320460	+	915.400024	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	B3A|SINE|B2	-130579.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117191535-5	chr11	117190951	117191951	+	915.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-8210.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4836513-4	chr7	4836064	4837064	+	915.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172737, exon 2 of 6)	exon (NM_172737, exon 2 of 6)	8132.0	NM_001290291	232813.0	Mm.44666	NM_172737	ENSMUSG00000053550	Shisa7	ckamp59	shisa family member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84601403-6	chr2	84600982	84601982	+	915.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007615, exon 20 of 20)	3' UTR (NM_007615, exon 20 of 20)	47998.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0.0	0.0	4.0	0.0	1.5	8.5
Merged-chr6-89281665-6	chr6	89281189	89282189	+	915.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131021, intron 1 of 3)	intron (NR_131021, intron 1 of 3)	4036.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-79107016-4	chr14	79106515	79107515	+	915.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027906, intron 37 of 44)	intron (NM_027906, intron 37 of 44)	92175.0	NR_152203	100043765.0	Mm.435553	NR_152203	ENSMUSG00000115111	Gm4632	-	predicted gene 4632	ncRNA	0.0	1.5	1.0	4.5	2.5	0.0
Merged-chr14-105736547-4	chr14	105736003	105737003	+	915.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112733.0	NR_105814	102465207.0		NR_105814	ENSMUSG00000098780	Mir6390	Gm27562|mmu-mir-6390	microRNA 6390	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83660521-3	chr6	83660014	83661014	+	915.355591	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4398.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	16.5	44.5	40.0	93.5	126.0	153.5
Merged-chr5-107988145-4	chr5	107987668	107988668	+	915.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-1091.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	9.5	24.0	15.5	4.5	4.5	18.0
Merged-chr3-144617241-4	chr3	144616729	144617729	+	915.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46802.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-9797302-4	chr1	9796845	9797845	+	915.339294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177547)	promoter-TSS (NM_177547)	-785.0	NM_133220	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	46.5	91.5	71.5	36.0	81.5	68.5
Merged-chr18-35654328-2	chr18	35653828	35654828	+	915.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001270646, exon 1 of 1)	exon (NM_001270646, exon 1 of 1)	871.0	NM_001270646	381148.0	Mm.297784	NM_001270646	ENSMUSG00000073600	Prob1	Gm1614	proline rich basic protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92416664-3	chr16	92416149	92417149	+	915.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-16571.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99243507-3	chr5	99242942	99243942	+	915.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	9485.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153386902-3	chr1	153386393	153387393	+	915.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27340.0	NR_033736	626058.0	Mm.31556	NM_001177359		E330020D12Rik	EG626058|F430003O07Rik|Gm6648	Riken cDNA E330020D12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-153917372-4	chr3	153916872	153917872	+	915.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR9A3|LTR|ERVK	-4406.0	NR_028094	19352.0	Mm.277831	NM_011231	ENSMUSG00000038975	Rabggtb	-	Rab geranylgeranyl transferase, b subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135891696-4	chr4	135891192	135892192	+	915.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-3497.0	NM_009924	12802.0	Mm.297251	NM_009924	ENSMUSG00000062585	Cnr2	CB-2|CB2|CB2-R	cannabinoid receptor 2 (macrophage)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49214639-3	chr13	49214175	49215175	+	915.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026738, intron 1 of 5)	intron (NM_026738, intron 1 of 5)	1351.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150586423-3	chr4	150585914	150586914	+	915.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	65760.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	1.5	1.5	0.5	4.0	3.0	3.0
Merged-chr2-162998720-4	chr2	162998225	162999225	+	915.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291154, intron 9 of 12)	intron (NM_001291154, intron 9 of 12)	7310.0	NM_001291152	27219.0	Mm.26462	NM_013731	ENSMUSG00000017868	Sgk2	AI098171|AW146006|Sgkl	serum/glucocorticoid regulated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129880060-2	chr2	129879569	129880569	+	915.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78610.0	NR_029452	654409.0	Mm.305555	NR_029452		Stk35os1	4932416H05Rik	serine/threonine kinase 35, opposite strand 1	ncRNA	1.5	9.5	1.0	4.5	4.0	6.0
Merged-chr10-87016567-4	chr10	87016084	87017084	+	915.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8642.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	0.0	0.0	5.5	0.0	0.0	5.5
Merged-chr6-122599403-5	chr6	122598833	122599833	+	915.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134391, intron 2 of 7)	ID_B1|SINE|B4	3111.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	84.0	273.0	148.5	95.5	199.5	143.5
Merged-chr3-51422225-4	chr3	51421728	51422728	+	915.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053089, intron 1 of 19)	MTD|LTR|ERVL-MaLR	6212.0	NM_053089	74838.0	Mm.275281	NM_053089	ENSMUSG00000063273	Naa15	5730450D16Rik|6330400I15|ASTBDN|Narg1|Tbdn-1|mNAT1	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-9710522-3	chr15	9710023	9711023	+	915.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305042, intron 9 of 36)	ORR1F|LTR|ERVL-MaLR	38345.0	NM_177123	320277.0	Mm.127822	NM_177123	ENSMUSG00000072663	Spef2	C230086A09Rik	sperm flagellar 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-5203413-4	chr16	5202903	5203903	+	915.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013796, exon 2 of 10)	exon (NM_013796, exon 2 of 10)	609.0	NM_013796	27426.0	Mm.215641	NM_013796	ENSMUSG00000023143	Nagpa	AI596180|UCE	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33776917-3	chr16	33776416	33777416	+	915.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17121.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47464702-3	chr19	47464221	47465221	+	915.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164717)	promoter-TSS (NM_001164717)	-310.0	NM_008018	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76373162-3	chr12	76372576	76373576	+	915.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178744, intron 1 of 1)	PB1D10|SINE|Alu	2810.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101979597-3	chr15	101979045	101980045	+	915.3110960000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	24797.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93613830-3	chr16	93613328	93614328	+	915.305542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5991.0	NM_007620	12408.0	Mm.26940	NM_007620	ENSMUSG00000051483	Cbr1	AW261796|CR|Cbr	carbonyl reductase 1	protein-coding	29.5	55.0	90.0	0.0	7.0	2.5
Merged-chr11-86485948-2	chr11	86485448	86486448	+	915.2999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_029788, intron 1 of 8)	intron (NM_029788, intron 1 of 8)	1291.0	NM_029788	76892.0	Mm.262707	NM_029788	ENSMUSG00000020521	Rnft1	0610013E23Rik|AV007605	ring finger protein, transmembrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75195233-5	chr11	75194715	75195715	+	915.2999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177708, intron 1 of 1)	CpG	1222.0	NM_177708	237847.0	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	5.0	2.0	6.5	4.5	5.0	0.0
Merged-chr6-83102182-5	chr6	83101749	83102749	+	915.2999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081266, exon 1 of 9)	exon (NM_001081266, exon 1 of 9)	733.0	NM_001081266	243510.0	Mm.436553	NM_001081266	ENSMUSG00000107499	Ccdc142	A230058J24Rik	coiled-coil domain containing 142	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103345004-6	chr11	103344428	103345428	+	915.297241	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133715)	promoter-TSS (NM_133715)	175.0	NR_045346	653030.0	Mm.440684	NR_045346	ENSMUSG00000085887	Arhgap27os3	F830206d12rik|Gm11648	Rho GTPase activating protein 27, opposite strand 3	ncRNA	9.0	55.5	33.0	22.0	9.5	18.5
Merged-chr2-165889012-4	chr2	165888528	165889528	+	915.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-4190.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.0	0.5	2.0	1.0	1.0	0.5
Merged-chr3-138522037-5	chr3	138521457	138522457	+	915.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4234.0	NM_007917	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	7.0	14.5	18.5	12.5	14.0	23.5
Merged-chr10-67181051-4	chr10	67180537	67181537	+	915.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 2 of 25)	intron (NM_207221, intron 2 of 25)	-4713.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136811558-4	chr6	136811065	136812065	+	915.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	3317.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	33.0	114.5	56.5	18.0	105.0	53.5
Merged-chr11-70055759-2	chr11	70055259	70056259	+	915.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009714, intron 2 of 8)	intron (NM_009714, intron 2 of 8)	1404.0	NM_001291132	11889.0	Mm.6559	NM_009714	ENSMUSG00000020884	Asgr1	ASGPR1|Asgr|Asgr-1|HL-1	asialoglycoprotein receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-66537493-4	chr6	66537015	66538015	+	915.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355624, intron 2 of 5)	intron (NM_001355624, intron 2 of 5)	2294.0	NM_001355624	56150.0	Mm.489653	NM_019499	ENSMUSG00000029910	Mad2l1	AA673185|MAD2	MAD2 mitotic arrest deficient-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142386835-4	chr7	142386337	142387337	+	915.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009983, intron 1 of 8)	intron (NM_009983, intron 1 of 8)	1033.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	33.5	80.0	103.0	29.0	77.5	101.0
Merged-chr7-99124092-4	chr7	99123601	99124601	+	915.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 1 of 14)	RLTR11A|LTR|ERVK	17043.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	4.0	1.5	5.5	0.0	2.5	2.0
Merged-chr16-57423609-4	chr16	57423124	57424124	+	915.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	70347.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	1.0	15.5	25.0	2.0	15.0	6.0
Merged-chr8-83169941-4	chr8	83169466	83170466	+	915.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111304, intron 1 of 20)	intron (NM_001111304, intron 1 of 20)	4614.0	NM_027758	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	26.0	66.5	44.5	35.5	56.5	20.5
Merged-chr11-109344159-4	chr11	109343670	109344670	+	915.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2697.0	NR_027883	67927.0	Mm.394490	NR_027883	ENSMUSG00000099630	1700096J18Rik	-	RIKEN cDNA 1700096J18 gene	ncRNA	0.0	3.0	0.0	0.0	3.0	0.0
Merged-chr5-118650937-4	chr5	118650450	118651450	+	915.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	90231.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9136009-4	chr4	9135549	9136549	+	915.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-133244.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86492461-3	chr1	86491968	86492968	+	915.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34089.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67996668-3	chr15	67996161	67997161	+	915.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	262195.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	5.0	1.5	1.5	5.0	1.5	1.5
Merged-chr3-103280476-3	chr3	103279976	103280976	+	915.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079830, intron 1 of 18)	CpG	1183.0	NM_053170	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75457983-3	chr11	75457600	75458600	+	915.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-3383.0	NM_138950	192652.0	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72230791-4	chr5	72230304	72231304	+	915.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 3 of 22)	intron (NR_003966, intron 3 of 22)	27461.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132113845-3	chr2	132113331	132114331	+	915.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	31277.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73445802-3	chr12	73445292	73446292	+	915.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger9b|DNA|TcMar-Tigger	-36229.0	NR_046013	380765.0	Mm.490476	NR_046013	ENSMUSG00000056359	D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	0.0	0.0	2.0	0.0	0.0	1.0
Merged-chr19-53842134-2	chr19	53841634	53842634	+	915.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170847, intron 8 of 13)	intron (NM_001170847, intron 8 of 13)	-50097.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37222030-4	chr10	37221534	37222534	+	915.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83108.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-66818274-2	chr1	66817749	66818749	+	915.166626	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001122738)	promoter-TSS (NM_001122738)	-654.0	NM_001122738	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95924923-4	chr4	95924414	95925414	+	915.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113412, intron 15 of 15)	L1_Mus1|LINE|L1	42121.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	5.5	2.5	4.0	0.5	1.0	8.0
Merged-chr4-121009979-4	chr4	121009492	121010492	+	915.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133716, intron 1 of 9)	L2a|LINE|L2	7255.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	20.5	84.5	39.0	11.0	17.0	16.5
Merged-chr4-57957587-6	chr4	57957142	57958142	+	915.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1231.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77917022-6	chr10	77916450	77917450	+	915.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 29 of 33)	RLTR11A|LTR|ERVK	-14414.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119438354-3	chr8	119437762	119438762	+	915.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027950, intron 1 of 5)	intron (NM_027950, intron 1 of 5)	1100.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103832120-4	chr2	103831624	103832624	+	915.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-21502.0	NR_040514	78031.0	Mm.243867	NR_040514	ENSMUSG00000086687	4930547E08Rik	-	RIKEN cDNA 4930547E08 gene	ncRNA	5.0	1.5	5.0	3.0	13.5	6.5
Merged-chr18-66520268-4	chr18	66519681	66520681	+	915.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16003.0	NR_040528	100503565.0	Mm.98256	NR_040528		Gm9926	-	predicted gene 9926	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-43751080-4	chr10	43750582	43751582	+	915.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040581, intron 1 of 3)	intron (NR_040581, intron 1 of 3)	4924.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33903502-4	chr17	33903011	33904011	+	915.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4A|LTR|ERVK	-1624.0	NR_040470	474160.0	Mm.206186	NR_040470	ENSMUSG00000092349	Platr17	-	pluripotency associated transcript 17	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38923233-3	chr18	38922734	38923734	+	915.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033789, intron 3 of 4)	intron (NM_001033789, intron 3 of 4)	-4535.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	10.0	1.0	0.0	1.0	0.0	0.0
Merged-chr10-128238291-3	chr10	128237771	128238771	+	915.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011589, intron 1 of 28)	intron (NM_011589, intron 1 of 28)	205.0	NM_011589	21853.0	Mm.6458	NM_011589	ENSMUSG00000039994	Timeless	C77407|Debt69|tim	timeless circadian clock 1	protein-coding	11.5	0.0	1.0	0.0	2.0	5.5
Merged-chr7-100460896-3	chr7	100460386	100461386	+	915.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 32 of 32)	ORR1E|LTR|ERVL-MaLR	-12105.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-76988130-4	chr8	76987627	76988627	+	915.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083906, intron 2 of 8)	Charlie4a|DNA|hAT-Charlie	85619.0	NM_001083906	110784.0	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61707905-3	chr9	61707408	61708408	+	915.0476070000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	206602.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-163926533-4	chr1	163926034	163927034	+	915.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14-int|LTR|ERV1	-2566.0	NM_001286002	240880.0	Mm.389213	NM_028776	ENSMUSG00000026584	Scyl3	1200016D23Rik|6030457O16|AW214499|Pace1	SCY1-like 3 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87358888-4	chr3	87358477	87359477	+	915.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009690, intron 1 of 5)	intron (NM_009690, intron 1 of 5)	1096.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	213.0	382.5	358.5	304.0	589.5	508.5
Merged-chr17-43334334-4	chr17	43333831	43334831	+	915.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26100.0	NM_001357332	224792.0	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	8.5	26.0	10.0	6.5	9.5	2.0
Merged-chr15-102377155-7	chr15	102376637	102377637	+	915.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10169.0	NM_001348205	170574.0	Mm.263284	NM_130458	ENSMUSG00000060284	Sp7	6430578P22Rik|C22|Osx	Sp7 transcription factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-39616894-4	chr15	39616366	39617366	+	915.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053271, intron 22 of 26)	intron (NM_053271, intron 22 of 26)	-42645.0	NM_001256384	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22843046-4	chr11	22842557	22843557	+	915.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	16678.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-77167516-1	chr5	77167016	77168016	+	915.0	f0_balb.idr	Intergenic	Intergenic	43689.0	NM_001289767	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	1.0	1.0	1.5	2.0	0.5	4.5
Merged-chr19-6949764-2	chr19	6949264	6950264	+	915.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285453, intron 2 of 3)	intron (NM_001285453, intron 2 of 3)	7202.0	NM_001285453	12015.0	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141476818-3	chr7	141476341	141477341	+	915.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252588, intron 1 of 7)	intron (NM_001252588, intron 1 of 7)	461.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150497011-2	chr4	150496511	150497511	+	915.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 7 of 22)	intron (NM_001085492, intron 7 of 22)	155163.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126137978-3	chr4	126137493	126138493	+	915.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 10 of 10)	intron (NM_028800, intron 10 of 10)	-10010.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85732855-2	chr1	85732355	85733355	+	915.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177055, intron 1 of 5)	Lx8|LINE|L1	3751.0	NM_177055	319997.0	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45387802-2	chr13	45387302	45388302	+	915.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1940.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	2.0	8.5	2.0	2.0	8.5	2.0
Merged-chr4-137837990-4	chr4	137837468	137838468	+	915.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24269.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	11.5	14.5	23.0	24.5	33.0	29.5
Merged-chr15-90656323-2	chr15	90655823	90656823	+	915.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033851, intron 1 of 3)	intron (NM_001033851, intron 1 of 3)	23065.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	0.0	1.0	0.5	0.0	1.0	0.5
Merged-chr5-131596055-2	chr5	131595555	131596555	+	915.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177047, intron 5 of 19)	intron (NM_177047, intron 5 of 19)	-181337.0	NR_152164	545809.0	Mm.357553	NR_152164	ENSMUSG00000105387	Gm29681	Gm42590	predicted gene, 29681	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128376450-2	chr10	128375950	128376950	+	915.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172790)	promoter-TSS (NM_172790)	-674.0	NM_172790	237615.0	Mm.440177	NM_172790	ENSMUSG00000014498	Ankrd52	6430544C07|G431002C21Rik	ankyrin repeat domain 52	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59799432-2	chr13	59798932	59799932	+	915.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153538, intron 13 of 27)	RSINE1|SINE|B4	23715.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70585369-2	chr11	70584869	70585869	+	915.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 1 of 30)	intron (NM_016713, intron 1 of 30)	22488.0	NM_016713	50932.0	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-51099435-3	chr2	51098931	51099931	+	915.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49680.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64319667-1	chr5	64319167	64320167	+	915.0	f1_balb.idr	intron (NM_001289514, intron 13 of 18)	intron (NM_001289514, intron 13 of 18)	89310.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	5.5	21.0	0.5	0.0	3.5	2.0
Merged-chr14-69780509-2	chr14	69780009	69781009	+	915.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_020275, exon 7 of 8)	exon (NM_020275, exon 7 of 8)	13037.0	NM_020275	21933.0	Mm.193430	NM_020275	ENSMUSG00000022074	Tnfrsf10b	DR5|KILLER|Ly98|MK|TRAILR2|TRICK2A|TRICK2B|TRICKB	tumor necrosis factor receptor superfamily, member 10b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-38668739-2	chr13	38668239	38669239	+	915.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-9711.0	NM_025380	66143.0	Mm.490319	NM_025380	ENSMUSG00000001707	Eef1e1	1110003A02Rik	eukaryotic translation elongation factor 1 epsilon 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-28823635-3	chr13	28823126	28824126	+	915.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045054, intron 2 of 7)	ID_B1|SINE|B4	61796.0	NR_045054	72518.0	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-56382590-2	chr14	56382090	56383090	+	915.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_138652, exon 15 of 23)	exon (NM_138652, exon 15 of 23)	17522.0	NM_138652	192113.0	Mm.273271	NM_138652	ENSMUSG00000022229	Atp12a	Atp1al1|HKalpha2|cHKA	ATPase, H+/K+ transporting, nongastric, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63590634-4	chr4	63590120	63591120	+	915.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	10144.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132586065-3	chr2	132585564	132586564	+	915.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7816.0	NM_001355652	74182.0	Mm.211211	NM_027096	ENSMUSG00000027346	Gpcpd1	2310004G06Rik|2310032D16Rik|AU015213|Gde5|Prei4|mKIAA1434	glycerophosphocholine phosphodiesterase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67974949-2	chr17	67974449	67975449	+	915.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172964, intron 1 of 17)	intron (NM_172964, intron 1 of 17)	-24009.0	NM_001347410	268970.0	Mm.9935	NM_172964	ENSMUSG00000024043	Arhgap28	AU044757|AW550892|E130310N06	Rho GTPase activating protein 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88576844-2	chr17	88576312	88577312	+	915.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028658, intron 16 of 21)	B4|SINE|B4	46688.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	0.0	2.5	15.5	8.0	0.0	1.0
Merged-chr2-79677839-1	chr2	79677339	79678339	+	915.0	f0_balb.idr	Intergenic	Intergenic	-29941.0	NM_172420	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	1.5	4.5	3.5	0.0	7.0	6.0
Merged-chr13-113269218-2	chr13	113268718	113269718	+	915.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59559.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-70787896-2	chr6	70787396	70788396	+	915.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009075, intron 1 of 8)	intron (NM_009075, intron 1 of 8)	4279.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70234517-2	chr11	70234017	70235017	+	915.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029581)	promoter-TSS (NR_029581)	-200.0	NR_030444	751537.0		NR_030444	ENSMUSG00000105220	Mir497	Mir|Mirn497|mir-497a|mmu-mir-497|mmu-mir-497a	microRNA 497	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4290660-2	chr2	4290160	4291160	+	915.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172475, intron 1 of 22)	MTD|LTR|ERVL-MaLR	-110316.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150663394-2	chr4	150662894	150663894	+	915.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-11220.0	NM_173774	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61149311-2	chr10	61148811	61149811	+	915.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1627.0	NM_001316674	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73155320-2	chr15	73154820	73155820	+	915.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	29627.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105112242-2	chr5	105111742	105112742	+	915.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-1950.0	NM_172777	236573.0	Mm.425261	NM_172777	ENSMUSG00000029298	Gbp9	-	guanylate-binding protein 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-144971572-1	chr7	144971072	144972072	+	915.0	f1_c57bl6.idr	Intergenic	Intergenic	-31647.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	0.0	0.0	1.5	0.0	3.0	7.0
Merged-chr15-5263262-2	chr15	5262762	5263762	+	915.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19075.0	NM_008965	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-21983218-3	chr3	21982703	21983703	+	915.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-93449.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102680295-2	chr12	102679795	102680795	+	915.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	4725.0	NR_035457	100316812.0		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-81780760-3	chr12	81780269	81781269	+	915.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177395, exon 1 of 8)	exon (NM_177395, exon 1 of 8)	401.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34182530-2	chr13	34182030	34183030	+	915.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033167, exon 11 of 11)	3' UTR (NM_001033167, exon 11 of 11)	19566.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102461307-3	chr12	102460751	102461751	+	915.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7883.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	17.0	41.5	20.0	24.5	32.5	39.0
Merged-chr5-32013571-3	chr5	32013066	32014066	+	915.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 10 of 11)	intron (NM_144541, intron 10 of 11)	-122906.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	3.5	8.0	5.5	6.5	3.0	8.5
Merged-chr13-52530750-4	chr13	52530265	52531265	+	914.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024474)	promoter-TSS (NM_001024474)	71.0	NM_001024474	68203.0	Mm.29362	NM_001024474	ENSMUSG00000047842	Diras2	2900052J15Rik|AI414999	DIRAS family, GTP-binding RAS-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84330046-3	chr10	84329538	84330538	+	914.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110433.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67788258-3	chr15	67787747	67788747	+	914.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	470609.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	5.0	3.0	12.0	1.0	7.0	3.0
Merged-chr6-82781077-4	chr6	82780563	82781563	+	914.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6609.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-57590998-4	chr19	57590504	57591504	+	914.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20030.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	0.0	2.5	0.5	0.0	6.5	1.0
Merged-chr19-56422985-6	chr19	56422426	56423426	+	914.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007611, intron 2 of 6)	intron (NM_007611, intron 2 of 6)	25797.0	NM_007611	12369.0	Mm.35687	NM_007611	ENSMUSG00000025076	Casp7	AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7	caspase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-99947208-6	chr4	99946685	99947685	+	914.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028132, intron 1 of 10)	intron (NM_028132, intron 1 of 10)	17734.0	NM_028132	72157.0	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102694990-4	chr12	102694487	102695487	+	914.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	9882.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90060117-4	chr7	90059617	90060617	+	914.895874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30958.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	12.5	18.5	6.0	7.0	1.0	2.0
Merged-chr1-162587746-3	chr1	162587239	162588239	+	914.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356527, intron 4 of 7)	intron (NM_001356527, intron 4 of 7)	16911.0	NM_016796	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	8.5	15.0	14.0	14.5	30.5	13.0
Merged-chr17-24667655-3	chr17	24667099	24668099	+	914.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2088.0	NM_001348231	213753.0	Mm.219581	NM_183149	ENSMUSG00000041130	Zfp598	BC023040|Ntrap|Znf598	zinc finger protein 598	protein-coding	5.0	1.0	3.5	0.0	2.5	1.0
Merged-chr11-6169420-4	chr11	6168899	6169899	+	914.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173748, intron 2 of 5)	intron (NM_173748, intron 2 of 5)	3932.0	NR_029471	100042173.0	Mm.441799	NR_029471		Rps15a-ps6	Gm11968	ribosomal protein S15A, pseudogene 6	pseudo	3.0	10.0	2.0	2.0	9.0	5.5
Merged-chr19-12595692-4	chr19	12595196	12596196	+	914.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015503, intron 1 of 1)	intron (NR_015503, intron 1 of 1)	870.0	NR_015503	74333.0	Mm.329744	NR_015503	ENSMUSG00000086213	A330040F15Rik	-	RIKEN cDNA A330040F15 gene	ncRNA	6.0	19.0	16.5	0.0	5.0	18.0
Merged-chr14-105142208-4	chr14	105141714	105142714	+	914.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134077, intron 11 of 20)	MTC|LTR|ERVL-MaLR	-27538.0	NR_040628	100502987.0	Mm.124957	NR_040628		Gm17066	-	predicted gene 17066	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34922136-4	chr6	34921626	34922626	+	914.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009292, intron 1 of 8)	intron (NM_009292, intron 1 of 8)	1178.0	NM_009292	20899.0	Mm.5171	NM_009292	ENSMUSG00000029848	Stra8	-	stimulated by retinoic acid gene 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-28678125-6	chr19	28677644	28678644	+	914.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045330)	promoter-TSS (NR_045330)	-80.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-35222594-2	chr4	35222094	35223094	+	914.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081343, intron 1 of 10)	Tigger7|DNA|TcMar-Tigger	3286.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25064436-2	chr17	25063932	25064932	+	914.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001183, intron 2 of 2)	intron (NM_001001183, intron 2 of 2)	16682.0	NM_001001183	407831.0	Mm.34379	NM_001001183	ENSMUSG00000024168	Tmem204	-	transmembrane protein 204	protein-coding	1.0	6.5	0.0	5.5	0.0	0.0
Merged-chr1-153434009-4	chr1	153433512	153434512	+	914.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033162, intron 3 of 9)	MTD|LTR|ERVL-MaLR	8803.0	NM_001033162	71836.0	Mm.49460	NM_001033162	ENSMUSG00000042708	Shcbp1l	1700012A16Rik	Shc SH2-domain binding protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10860327-3	chr19	10859825	10860825	+	914.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133804, exon 9 of 11)	exon (NM_133804, exon 9 of 11)	9454.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75784051-4	chr10	75783538	75784538	+	914.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001358778, exon 5 of 5)	3' UTR (NM_001358778, exon 5 of 5)	-2616.0	NM_001346523	103140.0	Mm.5731	NM_133994	ENSMUSG00000001665	Gstt3	AI118089	glutathione S-transferase, theta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79440581-5	chr15	79440081	79441081	+	914.7999880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359863, intron 1 of 10)	intron (NM_001359863, intron 1 of 10)	1237.0	NM_001289899	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-51498147-4	chr1	51497648	51498648	+	914.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19749.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-132870280-4	chr3	132869773	132870773	+	914.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102297, intron 1 of 3)	intron (NR_102297, intron 1 of 3)	8323.0	NR_102297	101243624.0	Mm.306256	NR_102297	ENSMUSG00000106230	Gm29811	-	predicted gene, 29811	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7470250-4	chr10	7469757	7470757	+	914.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029975, intron 1 of 5)	IAPEY4_LTR|LTR|ERVK	3220.0	NM_029975	77777.0	Mm.442442	NM_029975	ENSMUSG00000079685	Ulbp1	A430108B07Rik|MULT1	UL16 binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45623667-4	chr17	45623169	45624169	+	914.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-21567.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47294491-3	chr14	47293975	47294975	+	914.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3799.0	NM_178684	218975.0	Mm.212297	NM_178684	ENSMUSG00000021840	Mapk1ip1l	9130202B12|C130032J12Rik	mitogen-activated protein kinase 1 interacting protein 1-like	protein-coding	6.0	13.0	10.0	11.0	18.0	11.0
Merged-chr9-21969416-4	chr9	21968865	21969865	+	914.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-5789.0	NM_010149	13857.0	Mm.2653	NM_010149	ENSMUSG00000006235	Epor	-	erythropoietin receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184733439-4	chr1	184732925	184733925	+	914.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008250)	promoter-TSS (NM_008250)	-932.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145863583-6	chr6	145863009	145864009	+	914.763916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_024469, exon 5 of 5)	exon (NM_024469, exon 5 of 5)	1911.0	NM_024469	79362.0	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53265714-4	chr18	53265275	53266275	+	914.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	B1_Mur2|SINE|Alu	20113.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106783713-2	chr11	106783211	106784211	+	914.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037224)	promoter-TSS (NR_037224)	-952.0	NR_037224	100526469.0		NR_037224	ENSMUSG00000093273	Mir3064	mir-3064|mmu-mir-3064	microRNA 3064	ncRNA	9.0	23.0	2.5	9.5	20.0	2.5
Merged-chr11-75591678-2	chr11	75591178	75592178	+	914.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008850, intron 1 of 11)	intron (NM_008850, intron 1 of 11)	3599.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	3.5	5.5	12.5	0.0	14.5	5.5
Merged-chr6-97316596-2	chr6	97316017	97317017	+	914.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 12 of 23)	intron (NM_145148, intron 12 of 23)	-63737.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	8.0	7.0	18.5	2.0	9.5	11.0
Merged-chr1-88568109-2	chr1	88567609	88568609	+	914.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	16592.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26753708-4	chr17	26753233	26754233	+	914.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029870, intron 4 of 8)	intron (NM_029870, intron 4 of 8)	-27346.0	NM_172149	224630.0	Mm.21795	NM_172149	ENSMUSG00000024191	Bnip1	2010005M06Rik|5930429G21Rik|Sec20	BCL2/adenovirus E1B interacting protein 1	protein-coding	28.5	9.5	3.0	12.5	15.5	3.0
Merged-chr10-13686267-4	chr10	13685785	13686785	+	914.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025446, intron 4 of 5)	intron (NM_025446, intron 4 of 5)	-133143.0	NM_001347361	56535.0	Mm.282711	NM_019961	ENSMUSG00000019809	Pex3	1700014F15Rik|2810027F19Rik|2900010N04Rik	peroxisomal biogenesis factor 3	protein-coding	21.0	6.0	7.0	3.5	23.0	17.5
Merged-chr18-34930990-4	chr18	34930504	34931504	+	914.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144866, intron 2 of 10)	intron (NM_144866, intron 2 of 10)	999.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122502994-4	chr5	122502506	122503506	+	914.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009722)	promoter-TSS (NM_009722)	-781.0	NR_027838	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117970054-4	chr11	117969550	117970550	+	914.7374880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007707)	promoter-TSS (NM_007707)	-684.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74239619-5	chr1	74239220	74240220	+	914.7200320000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 2 of 10)	MER3|DNA|hAT-Charlie	3203.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140382854-4	chr5	140382346	140383346	+	914.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172277, intron 1 of 10)	intron (NM_172277, intron 1 of 10)	6462.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139368103-2	chr5	139367603	139368603	+	914.7000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	1642.0	NR_029768	723898.0		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45561424-4	chr7	45560933	45561933	+	914.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025330, intron 5 of 8)	B3|SINE|B2	6505.0	NM_025330	66065.0	Mm.285710	NM_025330	ENSMUSG00000030825	Hsd17b14	0610039E24Rik|Dhrs10|retSDR3	hydroxysteroid (17-beta) dehydrogenase 14	protein-coding	0.0	2.5	0.0	0.0	0.5	0.0
Merged-chr2-12327359-3	chr2	12326863	12327863	+	914.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25419.0	NM_001001309	241226.0	Mm.329997	NM_001001309	ENSMUSG00000026768	Itga8	AI447669	integrin alpha 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84749430-3	chr3	84748939	84749939	+	914.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-66138.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.0	2.5	0.5	0.0	4.0	0.5
Merged-chr1-156620229-4	chr1	156619754	156620754	+	914.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	54085.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	22.5	22.0	11.0	17.0	20.5	13.0
Merged-chr13-9354018-4	chr13	9353516	9354516	+	914.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	77491.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127252592-4	chr7	127252084	127253084	+	914.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360916, intron 2 of 2)	B2_Mm2|SINE|B2	7483.0	NM_001360916	244216.0	Mm.41038	NM_177362	ENSMUSG00000054716	Zfp771	G630024C07Rik|Znf771	zinc finger protein 771	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81185113-4	chr10	81184612	81185612	+	914.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190473, intron 2 of 8)	intron (NM_001190473, intron 2 of 8)	1194.0	NM_007828	13144.0	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-65510495-4	chr6	65509961	65510961	+	914.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79937.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45325663-3	chr14	45325133	45326133	+	914.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-4191.0	NM_025959	67089.0	Mm.18472	NM_025959	ENSMUSG00000021832	Psmc6	2300001E01Rik|AI451058	proteasome (prosome, macropain) 26S subunit, ATPase, 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35060091-4	chr9	35059619	35060619	+	914.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	MTEa|LTR|ERVL-MaLR	-56609.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	8.5	13.5	3.0	0.0	1.5	3.5
Merged-chr16-44187304-3	chr16	44186820	44187820	+	914.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029889, intron 1 of 7)	intron (NM_001029889, intron 1 of 7)	13923.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55215336-3	chr11	55214835	55215835	+	914.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153139, intron 2 of 10)	intron (NM_153139, intron 2 of 10)	10995.0	NM_153139	215335.0	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17271491-4	chr12	17270972	17271972	+	914.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027959, intron 2 of 12)	ORR1D2|LTR|ERVL-MaLR	4877.0	NM_027959	71853.0	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	0.0	4.5	7.5	13.5	13.5	11.0
Merged-chr18-67212968-3	chr18	67212495	67213495	+	914.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177137, intron 7 of 11)	intron (NM_177137, intron 7 of 11)	7636.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	4.5	0.0	0.0	1.0	4.0	6.0
Merged-chr11-114702813-4	chr11	114702311	114703311	+	914.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 6 of 13)	intron (NM_053273, intron 6 of 13)	-24601.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-70104158-3	chr16	70103656	70104656	+	914.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-209793.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30888409-4	chr14	30887843	30888843	+	914.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018746, intron 2 of 22)	intron (NM_018746, intron 2 of 22)	1867.0	NM_001289632	16427.0	Mm.34819	NM_018746	ENSMUSG00000021922	Itih4	ITI-HC4|Itih-4|PK-120	inter alpha-trypsin inhibitor, heavy chain 4	protein-coding	0.0	6.0	0.5	0.0	7.0	1.5
Merged-chr2-163642277-2	chr2	163641775	163642775	+	914.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_012032, intron 1 of 9)	intron (NM_012032, intron 1 of 9)	-2575.0	NR_028113	68386.0	Mm.410649	NR_028113	ENSMUSG00000058812	0610039K10Rik	-	RIKEN cDNA 0610039K10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24697077-3	chr13	24696579	24697579	+	914.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080381, intron 13 of 14)	UCON28c|Unknown|Unknown	58431.0	NM_029679	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29441746-2	chr17	29441246	29442246	+	914.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49299.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130531896-2	chr4	130531396	130532396	+	914.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025998, exon 7 of 7)	3' UTR (NM_025998, exon 7 of 7)	42140.0	NM_025998	67149.0	Mm.423029	NM_025998	ENSMUSG00000078532	Nkain1	2610200G18Rik|2810426C15Rik	Na+/K+ transporting ATPase interacting 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32987927-4	chr19	32987439	32988439	+	914.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-169173.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-49039706-4	chr6	49039210	49040210	+	914.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053110, intron 1 of 10)	B3A|SINE|B2	3192.0	NM_053110	93695.0	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.0	0.0	0.0	2.0	0.0	1.0
Merged-chr3-145922322-2	chr3	145921822	145922822	+	914.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-1940.0	NM_009740	12042.0	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130846445-2	chr5	130845945	130846945	+	914.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	397653.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88337528-3	chr3	88337073	88338073	+	914.6555789999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178246, intron 1 of 21)	intron (NM_178246, intron 1 of 21)	1313.0	NM_178246	229512.0	Mm.439830	NM_173188	ENSMUSG00000001415	Smg5	BC024683|mKIAA1089	Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	6.0	20.0	12.5	1.5	13.0	2.5
Merged-chr2-129221276-4	chr2	129220764	129221764	+	914.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045838, intron 1 of 4)	intron (NR_045838, intron 1 of 4)	2295.0	NR_045838	329513.0	Mm.473529	NM_177847	ENSMUSG00000056738	A730036I17Rik	-	RIKEN cDNA A730036I17 gene	ncRNA	0.0	3.5	5.0	0.0	0.0	1.0
Merged-chr6-119480183-11	chr6	119479775	119480775	+	914.636353	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133940, exon 1 of 1)	exon (NM_133940, exon 1 of 1)	607.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-58156015-14	chr2	58155513	58156513	+	914.630981	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139200, intron 1 of 7)	(T)n|Simple_repeat|Simple_repeat	4109.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-56909098-4	chr6	56908623	56909623	+	914.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360963, intron 1 of 9)	intron (NM_001360963, intron 1 of 9)	-7237.0	NM_001252374	107569.0	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|P5'N-1|P5N-1|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79627549-4	chr12	79627064	79628064	+	914.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	297169.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-140906285-4	chr4	140905807	140906807	+	914.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008812)	promoter-TSS (NM_008812)	-53.0	NM_008812	18600.0	Mm.2296	NM_008812	ENSMUSG00000028927	Padi2	Pdi|Pdi2|mKIAA0994	peptidyl arginine deiminase, type II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88876467-4	chr15	88875951	88876951	+	914.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14257.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-71104187-3	chr14	71103712	71104712	+	914.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147061.0	NR_046075	100043132.0	Mm.399336	NR_046075	ENSMUSG00000115139	Gm4251	-	predicted gene 4251	ncRNA	1.0	0.0	1.0	0.0	0.0	1.0
Merged-chr3-81925136-4	chr3	81924650	81925650	+	914.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7451.0	NM_177662	229445.0	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|AI118514	cathepsin O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125052354-4	chr5	125051842	125052842	+	914.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011424, intron 18 of 46)	intron (NM_011424, intron 18 of 46)	48867.0	NM_028443	73121.0	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	8.5	11.0	4.5	10.5	15.0	6.0
Merged-chr14-63117207-4	chr14	63116714	63117714	+	914.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5248.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86356702-4	chr11	86356202	86357202	+	914.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080931, intron 1 of 29)	intron (NM_001080931, intron 1 of 29)	823.0	NM_001080931	327987.0	Mm.341886	NM_001080931	ENSMUSG00000034297	Med13	1110067M05Rik|D030023K18|Thrap1|Trap240	mediator complex subunit 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55421286-4	chr13	55420781	55421781	+	914.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021489, exon 8 of 14)	exon (NM_021489, exon 8 of 14)	5523.0	NM_021489	58992.0	Mm.42224	NM_021489	ENSMUSG00000021492	F12	FXII|HAF	coagulation factor XII (Hageman factor)	protein-coding	0.0	0.0	0.0	0.0	1.0	1.0
Merged-chr12-119069962-3	chr12	119069449	119070449	+	914.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103528.0	NM_029961	77706.0	Mm.261496	NM_029961	ENSMUSG00000072791	Abcb5	9230106F14Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92034462-3	chr1	92033978	92034978	+	914.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207225, intron 3 of 26)	intron (NM_207225, intron 3 of 26)	145863.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	8.0	32.0	6.5	5.5	10.0	0.0
Merged-chr7-83643600-3	chr7	83643111	83644111	+	914.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001360089, exon 7 of 7)	3' UTR (NM_001360089, exon 7 of 7)	11594.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	7.5	3.5	6.0	2.0	0.0	5.0
Merged-chr2-160209613-3	chr2	160209108	160210108	+	914.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117886.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75935928-3	chr11	75935423	75936423	+	914.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10032.0	NM_001291159	380714.0	Mm.425697	NM_029548	ENSMUSG00000020847	Rph3al	Gm1753|Noc2	rabphilin 3A-like (without C2 domains)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76763938-4	chr16	76763440	76764440	+	914.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155453, intron 1 of 3)	intron (NR_155453, intron 1 of 3)	15152.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146759228-4	chr6	146758773	146759773	+	914.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172734, intron 2 of 13)	intron (NM_172734, intron 2 of 13)	34343.0	NM_172734	232533.0	Mm.322121	NM_172734	ENSMUSG00000001630	Stk38l	4930473A22Rik|Ndr2|Ndr54	serine/threonine kinase 38 like	protein-coding	16.5	7.0	10.5	0.0	2.5	6.0
Merged-chr19-4262981-4	chr19	4262457	4263457	+	914.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_105951)	TTS (NR_105951)	921.0	NR_105951	102465595.0		NR_105951	ENSMUSG00000099290	Mir6985	Gm27719|mmu-mir-6985	microRNA 6985	ncRNA	8.0	18.0	14.0	14.0	19.5	13.5
Merged-chr15-35460456-4	chr15	35459951	35460951	+	914.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177151, intron 16 of 61)	intron (NM_177151, intron 16 of 61)	88905.0	NM_177151	666173.0	Mm.309250	NM_177151	ENSMUSG00000037646	Vps13b	1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|mKIAA0532|mKIAA5032	vacuolar protein sorting 13B	protein-coding	0.0	0.0	0.0	1.5	0.5	0.0
Merged-chr7-128359316-4	chr7	128358819	128359819	+	914.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58853.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	1.0	0.5	3.0	1.5	1.5	3.0
Merged-chr17-50469277-4	chr17	50468792	50469792	+	914.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40255.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	4.0	15.0	25.5	3.0	34.5	7.5
Merged-chr15-75886838-6	chr15	75886287	75887287	+	914.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001282443, exon 5 of 14)	exon (NM_001282443, exon 5 of 14)	1936.0	NM_001282443	223645.0		NM_001282443	ENSMUSG00000098678	Mroh6	Gm19570	maestro heat-like repeat family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-81709600-2	chr17	81709100	81710100	+	914.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	L2b|LINE|L2	28787.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38701444-2	chr6	38700944	38701944	+	914.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 13 of 14)	intron (NM_010433, intron 13 of 14)	38375.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25358740-4	chr15	25358241	25359241	+	914.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55023.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-63925395-2	chr15	63924895	63925895	+	914.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029414)	TTS (NR_029414)	10934.0	NR_029414	74460.0	Mm.390801	NR_029414	ENSMUSG00000100127	Gsdmcl-ps	4933426G20Rik	gasdermin C-like, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-26801322-2	chr10	26800822	26801822	+	914.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	28810.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-62613060-2	chr12	62612560	62613560	+	914.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74727.0	NR_131949	73309.0	Mm.276558	NR_131949		Spanxn4	1700047L15Rik	SPANX family, member N4	ncRNA	0.0	1.0	0.0	0.0	1.0	0.0
Merged-chr2-127789984-2	chr2	127789427	127790427	+	914.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-1036.0	NM_001355429	53885.0	Mm.210766	NM_016902	ENSMUSG00000027378	Nphp1	-	nephronophthisis 1 (juvenile) homolog (human)	protein-coding	1.5	2.0	5.5	1.5	4.0	5.5
Merged-chr17-81616624-4	chr17	81616122	81617122	+	914.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	121765.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-15280783-2	chr9	15280283	15281283	+	914.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144933)	promoter-TSS (NM_144933)	-916.0	NM_144933	234959.0	Mm.44151	NM_144933	ENSMUSG00000031935	Med17	77kDa|C330002H14Rik|Crsp6|Trap80	mediator complex subunit 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-73240315-3	chr6	73239812	73240812	+	914.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-8193.0	NM_019879	56451.0	Mm.29845	NM_019879	ENSMUSG00000052738	Suclg1	1500000I01Rik|Sucla1	succinate-CoA ligase, GDP-forming, alpha subunit	protein-coding	15.0	39.0	12.0	4.0	5.0	1.0
Merged-chr5-121813724-2	chr5	121813224	121814224	+	914.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359153, intron 23 of 23)	intron (NM_001359153, intron 23 of 23)	5549.0	NR_105998	102465624.0		NR_105998	ENSMUSG00000099063	Mir7031	Gm27859|mmu-mir-7031	microRNA 7031	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3069580-2	chr4	3069080	3070080	+	914.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102503.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81336294-2	chr10	81335794	81336794	+	914.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6972.0	NM_148951	209047.0	Mm.218755	NM_148951	ENSMUSG00000034872	Gipc3	Ahl5|Rgs19ip3	GIPC PDZ domain containing family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-63582798-2	chr10	63582298	63583298	+	914.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164376, intron 5 of 17)	intron (NM_001164376, intron 5 of 17)	125287.0	NM_001164376	216033.0	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16881823-2	chr7	16881323	16882323	+	914.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081655, intron 1 of 3)	B1_Mur1|SINE|Alu	6506.0	NM_001081655	629378.0	Mm.491123	NM_001081655	ENSMUSG00000078794	Dact3	EG666671|naa-3	dishevelled-binding antagonist of beta-catenin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92703082-2	chr16	92702578	92703578	+	914.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-5749.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	2.0	48.0	12.5	6.0	16.5	8.5
Merged-chr6-38795416-2	chr6	38794916	38795916	+	914.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 2 of 14)	intron (NM_010433, intron 2 of 14)	41895.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82022053-2	chr11	82021553	82022553	+	914.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13524.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85102413-2	chr12	85101913	85102913	+	914.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175198, intron 1 of 4)	intron (NM_175198, intron 1 of 4)	4018.0	NM_175198	73422.0	Mm.311944	NM_175198	ENSMUSG00000042320	Prox2	1700058C01Rik	prospero homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3059629-2	chr4	3059129	3060129	+	914.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CACAG)n|Simple_repeat|Simple_repeat	-112454.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4228053-2	chr19	4227553	4228553	+	914.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132308, intron 2 of 3)	intron (NR_132308, intron 2 of 3)	-3840.0	NM_027196	69745.0	Mm.32518	NM_027196	ENSMUSG00000024854	Pold4	2410012M21Rik|AI463381|AW060307|Polds|p12	polymerase (DNA-directed), delta 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145370542-3	chr2	145370036	145371036	+	914.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053195, intron 2 of 16)	intron (NM_053195, intron 2 of 16)	127925.0	NM_053195	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86235515-2	chr15	86235015	86236015	+	914.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 2 of 12)	intron (NM_145476, intron 2 of 12)	21056.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5709527-2	chr11	5709027	5710027	+	914.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1828.0	NM_026080	64660.0	Mm.7328	NM_026080	ENSMUSG00000020477	Mrps24	3110030K20Rik|AI414579|Rpms24	mitochondrial ribosomal protein S24	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr3-87905425-2	chr3	87904925	87905925	+	914.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008231)	promoter-TSS (NM_008231)	-896.0	NM_008231	15191.0	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	19.0	12.0	7.0	15.5	16.0	13.0
Merged-chr14-113683445-2	chr14	113682945	113683945	+	914.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-1148520.0	NR_045661	75822.0	Mm.410813	NR_045661	ENSMUSG00000115320	4930524C18Rik	-	RIKEN cDNA 4930524C18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139298880-2	chr5	139298380	139299380	+	914.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 3 of 10)	intron (NM_172723, intron 3 of 10)	26584.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34145297-1	chr8	34144797	34145797	+	914.5	f1_balb.idr	intron (NM_026609, intron 1 of 3)	intron (NM_026609, intron 1 of 3)	1442.0	NM_026609	68192.0	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	2.5	11.0	3.5	2.5	5.5	7.0
Merged-chr5-3363671-2	chr5	3363171	3364171	+	914.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	19778.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155575200-2	chr4	155574700	155575700	+	914.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355599, intron 1 of 10)	MTD|LTR|ERVL-MaLR	11385.0	NM_001355599	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	2.5	0.0	0.0	0.0	1.0	0.0
Merged-chr5-108670577-2	chr5	108670076	108671076	+	914.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_174870, exon 3 of 3)	3' UTR (NM_174870, exon 3 of 3)	4220.0	NM_001310692	231583.0	Mm.440571	NM_174870	ENSMUSG00000046959	Slc26a1	Sat1	solute carrier family 26 (sulfate transporter), member 1	protein-coding	3.5	0.0	0.5	0.0	0.0	0.0
Merged-chr5-115558569-2	chr5	115558069	115559069	+	914.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007475)	promoter-TSS (NM_007475)	-898.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	0.0	4.0	2.5	0.0	0.0	1.0
Merged-chr4-43563282-4	chr4	43562780	43563780	+	914.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011602)	promoter-TSS (NM_011602)	646.0	NM_013497	12913.0	Mm.12407	NM_013497	ENSMUSG00000028466	Creb3	AU044960|AW538053|C80076|LZIP|LZIP-1|LZIP-2|Luman	cAMP responsive element binding protein 3	protein-coding	15.5	34.0	40.0	14.5	40.5	19.5
Merged-chr2-14236296-4	chr2	14235796	14236796	+	914.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 1 of 29)	(TTTTG)n|Simple_repeat|Simple_repeat	6882.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-37484368-4	chr2	37483869	37484869	+	914.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033960, intron 6 of 18)	MTC|LTR|ERVL-MaLR	32115.0	NM_001033960	227800.0	Mm.383192	NM_146121	ENSMUSG00000035437	Rabgap1	Gapcena|mKIAA4104	RAB GTPase activating protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121305652-3	chr10	121305150	121306150	+	914.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361015, intron 4 of 12)	intron (NM_001361015, intron 4 of 12)	5746.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	0.0	0.0	1.0	0.0	0.0	0.5
Merged-chr3-131868411-4	chr3	131867905	131868905	+	914.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-216887.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	5.0	23.0	10.0	2.0	6.0	1.5
Merged-chr14-9487668-4	chr14	9487167	9488167	+	914.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-396428.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	5.5	4.5	14.0	9.0	25.5	11.5
Merged-chr15-76232578-4	chr15	76232055	76233055	+	914.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163575)	TTS (NM_001163575)	-1177.0	NM_011117	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118137691-4	chr14	118137176	118138176	+	914.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021434, intron 1 of 8)	intron (NM_021434, intron 1 of 8)	549.0	NM_021434	58245.0	Mm.275411	NM_021434	ENSMUSG00000022131	Gpr180	AB041545|E130016I23Rik|Itr	G protein-coupled receptor 180	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-84855478-4	chr11	84854985	84855985	+	914.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153144, intron 5 of 13)	intron (NM_153144, intron 5 of 13)	-14520.0	NR_131201	102635561.0	Mm.341797	NR_131197		Ggnbp2os	-	gametogenetin binding protein 2, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113761865-4	chr6	113761336	113762336	+	914.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001036684, intron 15 of 19)	intron (NM_001036684, intron 15 of 19)	-21155.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26435567-4	chr8	26435066	26436066	+	914.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	277397.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	1.0	0.5	4.0	0.0	1.0	2.5
Merged-chr9-47531299-7	chr9	47530718	47531718	+	914.380981	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	CpG	866.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	11.0	32.5	21.5	11.0	14.0	19.5
Merged-chr12-12289381-4	chr12	12288868	12289868	+	914.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	27229.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32631889-4	chr2	32631388	32632388	+	914.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198791, intron 5 of 6)	intron (NM_001198791, intron 5 of 6)	2388.0	NM_021515	11636.0	Mm.29189	NM_021515	ENSMUSG00000026817	Ak1	Ak-1|B430205N08Rik	adenylate kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181659804-4	chr2	181659345	181660345	+	914.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11795.0	NM_009236	20672.0	Mm.264904	NM_009236	ENSMUSG00000046470	Sox18	AI385749|Ra|Ragl	SRY (sex determining region Y)-box 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168231523-2	chr2	168231023	168232023	+	914.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001160330, exon 1 of 1)	exon (NM_001160330, exon 1 of 1)	901.0	NM_001160330	69372.0	Mm.482182	NM_001160330	ENSMUSG00000074576	Mocs3	1700020H17Rik|Uba4	molybdenum cofactor synthesis 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-86870931-3	chr8	86870434	86871434	+	914.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	MTE2a|LTR|ERVL-MaLR	14324.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0.0	2.0	2.0	0.0	7.0	1.0
Merged-chr15-58986638-3	chr15	58986137	58987137	+	914.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	52827.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121697716-3	chr11	121697210	121698210	+	914.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4717.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105723583-3	chr5	105723085	105724085	+	914.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	22775.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.0	0.0	0.0	5.5	3.5	7.5
Merged-chr10-99171490-3	chr10	99170964	99171964	+	914.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	63329.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95160314-3	chr4	95159801	95160801	+	914.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108079.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79891288-3	chr11	79890822	79891822	+	914.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71065.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155369717-4	chr2	155369217	155370217	+	914.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-12139.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	46.5	118.5	50.5	27.0	51.5	45.0
Merged-chr7-80776317-4	chr7	80775826	80776826	+	914.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	RSINE1|SINE|B4	27005.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	41.5	133.0	94.0	72.0	138.5	96.5
Merged-chr5-137285236-2	chr5	137284736	137285736	+	914.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3018.0	NM_009599	11423.0	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	0.0	0.0	6.0	0.0	1.0	0.5
Merged-chr2-37735933-4	chr2	37735405	37736405	+	914.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-40344.0	NM_001163566	241324.0	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122602898-5	chr6	122602440	122603440	+	914.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031159)	promoter-TSS (NM_031159)	-496.0	NM_001134391	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	6.0	69.5	31.0	19.0	26.5	23.0
Merged-chr1-182937853-4	chr1	182937347	182938347	+	914.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16941.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35451815-4	chr2	35451331	35452331	+	914.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	9618.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46334292-4	chr18	46333784	46334784	+	914.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22356.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43772039-4	chr13	43771559	43772559	+	914.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13053.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87026207-4	chr1	87025724	87026724	+	914.287476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172157, intron 15 of 21)	Lx8|LINE|L1	63704.0	NM_007433	11650.0	Mm.195224	NM_007433	ENSMUSG00000026246	Alppl2	Akp5|C77216|D1Ertd816e|EAP	alkaline phosphatase, placental-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105894066-3	chr3	105893556	105894556	+	914.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-10365.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121613773-4	chr10	121613291	121614291	+	914.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359618, intron 6 of 24)	intron (NM_001359618, intron 6 of 24)	12541.0	NM_001081056	73192.0	Mm.25042	NM_001081056	ENSMUSG00000034667	Xpot	1110004L07Rik|3110065H13Rik|AI452076|C79645|EXPORTIN-T	exportin, tRNA (nuclear export receptor for tRNAs)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56621806-2	chr18	56621306	56622306	+	914.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33458.0	NM_026099	67343.0	Mm.87057	NM_026099	ENSMUSG00000032900	Tex43	1700065I17Rik|Tseg7	testis expressed 43	protein-coding	1.0	0.0	0.5	0.5	0.0	0.5
Merged-chr2-4929471-4	chr2	4928976	4929976	+	914.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010726, intron 5 of 8)	MTC|LTR|ERVL-MaLR	10480.0	NM_010726	16922.0	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66785642-4	chr15	66785148	66786148	+	914.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029841, intron 6 of 7)	intron (NM_001029841, intron 6 of 7)	46181.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-26905374-4	chr5	26904875	26905875	+	914.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198886, intron 1 of 25)	intron (NM_001198886, intron 1 of 25)	597.0	NM_001198886	13483.0	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12312070-4	chr15	12311577	12312577	+	914.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9419.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32166696-2	chr17	32166196	32167196	+	914.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_008716, exon 1 of 33)	exon (NM_008716, exon 1 of 33)	156.0	NM_008716	18131.0	Mm.439741	NM_008716	ENSMUSG00000038146	Notch3	AW229011|N3|hpbk	notch 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89964518-4	chr3	89964020	89965020	+	914.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1188.0	NM_001081182	54667.0	Mm.30455	NM_001081182	ENSMUSG00000060671	Atp8b2	Id	ATPase, class I, type 8B, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5401564-4	chr6	5401048	5402048	+	914.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355662, intron 2 of 4)	Lx8|LINE|L1	11138.0	NM_001355662	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	2.5	5.0	1.0	0.0	6.5	0.0
Merged-chr13-34154445-2	chr13	34153974	34154974	+	914.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8490.0	NM_001101430	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	1.0	3.5	0.0	0.0	5.5	1.5
Merged-chr1-171682137-6	chr1	171681676	171682676	+	914.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007649, intron 1 of 3)	intron (NM_007649, intron 1 of 3)	184.0	NM_001360767	12506.0	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	99.0	229.5	134.0	103.5	148.5	115.5
Merged-chr8-126779600-3	chr8	126779107	126780107	+	914.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69413.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	11.0	41.0	10.0	0.0	1.0	1.0
Merged-chr2-164078112-3	chr2	164077571	164078571	+	914.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021420, intron 1 of 10)	intron (NM_021420, intron 1 of 10)	3893.0	NM_021420	58231.0	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-82942072-4	chr9	82941577	82942577	+	914.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081216, intron 7 of 39)	intron (NM_001081216, intron 7 of 39)	33412.0	NM_001081216	83946.0	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78632073-3	chr9	78631550	78632550	+	914.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153098, intron 2 of 32)	intron (NM_153098, intron 2 of 32)	16504.0	NM_153098	235505.0	Mm.32955	NM_153098	ENSMUSG00000046186	Cd109	9930012E15Rik|AI480638|GARP	CD109 antigen	protein-coding	2.5	2.0	0.5	0.0	1.5	1.5
Merged-chr1-31034132-4	chr1	31033627	31034627	+	914.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136907, intron 2 of 3)	intron (NR_136907, intron 2 of 3)	62327.0	NR_136907	102634473.0	Mm.484482	NR_136907	ENSMUSG00000100371	Gm29669	-	predicted gene 29669	ncRNA	4.0	7.5	2.0	2.0	6.5	0.0
Merged-chr6-43404657-3	chr6	43404167	43405167	+	914.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 8 of 8)	intron (NM_013861, intron 8 of 8)	-37762.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-82835808-3	chr6	82835310	82836310	+	914.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	46043.0	NR_040520	69652.0	Mm.96357	NR_040520	ENSMUSG00000100291	2310069B03Rik	-	RIKEN cDNA 2310069B03 gene	ncRNA	6.0	8.5	4.5	6.0	5.0	4.0
Merged-chr14-54781196-4	chr14	54780713	54781713	+	914.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016972, exon 1 of 11)	exon (NM_016972, exon 1 of 11)	673.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	32.0	71.5	66.0	49.0	53.0	33.5
Merged-chr7-143464079-4	chr7	143463563	143464563	+	914.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3013.0	NM_001161624	12577.0	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106236285-3	chr9	106235793	106236793	+	914.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020559, intron 9 of 10)	intron (NM_020559, intron 9 of 10)	11437.0	NM_001291835	11655.0	Mm.290578	NM_020559	ENSMUSG00000032786	Alas1	ALAS|ALAS-N|Alas-1|Alas-h	aminolevulinic acid synthase 1	protein-coding	6.0	4.0	11.5	2.5	3.5	13.5
Merged-chr15-101988400-3	chr15	101987892	101988892	+	914.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	15950.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56273427-3	chr17	56272899	56273899	+	914.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174989, intron 1 of 1)	intron (NM_174989, intron 1 of 1)	3368.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88190907-4	chr17	88190362	88191362	+	914.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65350.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-70415606-3	chr18	70415110	70416110	+	914.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-56844.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	13.0	24.5	8.5	9.0	15.5	0.5
Merged-chr9-61021096-2	chr9	61020573	61021573	+	914.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	4004.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19506529-4	chr7	19506006	19507006	+	914.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177692, exon 2 of 2)	3' UTR (NM_177692, exon 2 of 2)	1825.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101239854-2	chr15	101239354	101240354	+	914.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-14668.0	NR_045328	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	0.0	1.0	3.5	2.5	0.0	2.5
Merged-chr2-34418559-2	chr2	34418059	34419059	+	914.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290626, intron 1 of 10)	L1MB7|LINE|L1	11708.0	NM_001290626	227743.0	Mm.270866	NM_177345	ENSMUSG00000038696	Mapkap1	AI591529|D230039K05Rik|Sin1	mitogen-activated protein kinase associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180874222-4	chr1	180873722	180874722	+	914.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18886.0	NM_177099	320202.0	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44847926-2	chr7	44847395	44848395	+	914.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042655, intron 3 of 16)	intron (NM_001042655, intron 3 of 16)	1184.0	NM_001042655	233204.0	Mm.27567	NM_144924	ENSMUSG00000038520	Tbc1d17	BC017607	TBC1 domain family, member 17	protein-coding	1.5	3.0	2.5	2.0	0.0	3.0
Merged-chr13-21812352-4	chr13	21811834	21812834	+	914.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175657)	TTS (NM_175657)	550.0	NM_175657	319161.0	Mm.261664	NM_175657	ENSMUSG00000069305	Hist1h4n	-	histone cluster 1, H4n	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-10037421-2	chr1	10036939	10037939	+	914.125	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026493)	promoter-TSS (NM_026493)	720.0	NR_102282	26754.0	Mm.402384	NM_013715	ENSMUSG00000025917	Cops5	AI303502|CSN5|Jab1|Mov34|Sgn5	COP9 signalosome subunit 5	protein-coding	4.5	31.0	22.5	5.5	25.5	15.0
Merged-chr10-26779070-4	chr10	26778560	26779560	+	914.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	6548.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21792186-4	chr13	21791689	21792689	+	914.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	4701.0	NM_001290466	319188.0	Mm.264645	NM_178202	ENSMUSG00000069308	Hist1h2bp	-	histone cluster 1, H2bp	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31944199-4	chr16	31943702	31944702	+	914.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172822, intron 2 of 2)	intron (NM_172822, intron 2 of 2)	4319.0	NR_027897	106264.0	Mm.347369	NM_025320	ENSMUSG00000107002	0610012G03Rik	AI839730	RIKEN cDNA 0610012G03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55863182-3	chr12	55862664	55863664	+	914.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001037756, exon 8 of 10)	exon (NM_001037756, exon 8 of 10)	26798.0	NR_155205	52592.0	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55385092-4	chr12	55384583	55385583	+	914.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310583, intron 1 of 6)	intron (NM_001310583, intron 1 of 6)	861.0	NM_001310583	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53312012-5	chr19	53311533	53312533	+	914.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	intron (NM_001360348, intron 1 of 5)	588.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45558875-2	chr17	45558377	45559377	+	914.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_008690, intron 2 of 5)	L2c|LINE|L2	3177.0	NM_001304956	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	1.0	2.5	1.5	0.5	1.0	1.5
Merged-chr9-105780189-2	chr9	105779683	105780683	+	914.083374	f0_balb.idr|f1_balb.idr	intron (NM_172927, intron 6 of 7)	LTR16A1|LTR|ERVL	29465.0	NM_172927	245026.0	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding	2.5	2.5	5.0	6.5	16.0	18.5
Merged-chr11-53765689-2	chr11	53765189	53766189	+	914.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2035.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85594433-2	chr12	85593933	85594933	+	914.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-4672.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-69289843-4	chr9	69289321	69290321	+	914.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289916)	promoter-TSS (NM_001289916)	-20.0	NM_001289916	19883.0	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111102455-4	chr10	111101984	111102984	+	914.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62318.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-133582163-4	chr3	133581694	133582694	+	914.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37804.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23546910-4	chr17	23546442	23547442	+	914.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3857.0	NR_126485	320020.0	Mm.445111	NR_126484		6330415G19Rik	-	RIKEN cDNA 6330415G19 gene	ncRNA	23.5	51.0	39.5	36.0	83.0	47.5
Merged-chr12-112622709-2	chr12	112622209	112623209	+	914.0714109999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 1 of 12)	intron (NM_007421, intron 1 of 12)	2662.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160618799-4	chr2	160618304	160619304	+	914.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-27093.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-16210744-3	chr12	16210241	16211241	+	914.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	379029.0	NM_015763	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	0.0	4.0	9.0	7.5	7.0	24.5
Merged-chr6-72093352-3	chr6	72092873	72093873	+	914.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4235.0	NM_001035228	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80311155-4	chr18	80310637	80311637	+	914.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190373, intron 3 of 3)	intron (NM_001190373, intron 3 of 3)	53117.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122941198-4	chr8	122940671	122941671	+	914.037476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 2 of 12)	RMER19C|LTR|ERVK	92797.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	12.0	37.0	23.0	12.0	12.0	22.0
Merged-chr9-101034007-2	chr9	101033481	101034481	+	914.033325	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311149, intron 1 of 13)	intron (NM_001311149, intron 1 of 13)	903.0	NM_001311149	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	4.5	15.5	10.5	4.0	18.5	14.0
Merged-chr5-43180239-1	chr5	43179739	43180739	+	914.0	f0_balb.idr	intron (NR_028417, intron 5 of 7)	intron (NR_028417, intron 5 of 7)	-53224.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	23.0	23.5	29.5	26.0	22.0	24.5
Merged-chr11-87967870-4	chr11	87967379	87968379	+	914.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18706.0	NM_001168472	68097.0	Mm.246436	NM_026556	ENSMUSG00000020483	Dynll2	1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2	dynein light chain LC8-type 2	protein-coding	0.5	5.5	5.5	6.0	4.5	5.0
Merged-chr2-13556948-2	chr2	13556448	13557448	+	914.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-12284.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6342215-2	chr19	6341715	6342715	+	914.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_117093, intron 3 of 30)	intron (NR_117093, intron 3 of 30)	1055.0	NR_117093	26412.0	Mm.25860	NM_009006	ENSMUSG00000024948	Map4k2	AI385662|BL44|GCK|Rab8ip	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-185333013-2	chr1	185332523	185333523	+	914.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347212, intron 1 of 7)	intron (NM_001347212, intron 1 of 7)	864.0	NM_001347212	23827.0	Mm.227549	NM_011794	ENSMUSG00000026617	Bpnt1	BPntase	bisphosphate 3'-nucleotidase 1	protein-coding	20.0	37.0	24.5	17.0	28.5	31.5
Merged-chr7-128748941-2	chr7	128748441	128749441	+	914.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029982, intron 1 of 18)	intron (NM_001029982, intron 1 of 18)	4071.0	NM_001029982	207352.0	Mm.297105	NM_001029982	ENSMUSG00000055319	Sec23ip	D7Ertd373e|p125	Sec23 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3647752-4	chr4	3647231	3648231	+	914.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8775.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	25.0	77.5	36.0	51.0	74.5	41.0
Merged-chr8-82984676-3	chr8	82984178	82985178	+	914.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 1 of 6)	ORR1F|LTR|ERVL-MaLR	121322.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	2.0	5.0	8.0	0.0	2.5	1.0
Merged-chr8-119574571-4	chr8	119574087	119575087	+	914.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026648)	promoter-TSS (NM_026648)	613.0	NM_175185	72552.0	Mm.36756	NM_175185	ENSMUSG00000034189	Hsdl1	2700067E09Rik	hydroxysteroid dehydrogenase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101331347-4	chr4	101330850	101331850	+	914.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15677.0	NR_029537	387143.0		NR_029537	ENSMUSG00000065451	Mir101a	Mirn101|Mirn101a|miR-101|mir-101a	microRNA 101a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114709772-2	chr5	114709272	114710272	+	914.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029992, intron 3 of 12)	MTEa|LTR|ERVL-MaLR	1993.0	NM_029992	77832.0	Mm.239698	NM_029992	ENSMUSG00000002486	Tchp	A930031F18Rik|AV279199	trichoplein, keratin filament binding	protein-coding	0.0	3.5	0.0	0.0	2.5	0.0
Merged-chr4-139571742-1	chr4	139571242	139572242	+	914.0	f1_c57bl6.idr	intron (NM_183148, intron 4 of 11)	intron (NM_183148, intron 4 of 11)	-2978.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	3.0	4.5	3.0	0.0	5.0	0.5
Merged-chr10-81000823-2	chr10	81000323	81001323	+	914.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010319, intron 1 of 3)	MTEb|LTR|ERVL-MaLR	542.0	NM_001038655	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-85762542-4	chr9	85762051	85763051	+	914.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13217.0	NM_175371	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	2.0	0.0	0.0	5.0	2.0	0.0
Merged-chr7-31132303-4	chr7	31131821	31132821	+	914.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153431, intron 18 of 18)	intron (NR_153431, intron 18 of 18)	-5298.0	NM_011322	20266.0	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	17.0	44.0	30.5	24.0	100.0	55.5
Merged-chr4-155668701-2	chr4	155668201	155669201	+	914.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001256107, exon 1 of 20)	5' UTR (NM_001256107, exon 1 of 20)	553.0	NM_001256108	76580.0	Mm.235738	NM_145124	ENSMUSG00000029060	Mib2	2210008I11Rik|Zzank1|skd	mindbomb E3 ubiquitin protein ligase 2	protein-coding	14.5	31.0	4.5	1.5	6.0	17.5
Merged-chr5-125386006-2	chr5	125385506	125386506	+	914.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019639)	TTS (NM_019639)	4011.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71469984-2	chr8	71469484	71470484	+	914.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001294259, intron 1 of 3)	intron (NM_001294259, intron 1 of 3)	790.0	NR_122114	66498.0	Mm.260360	NM_025600	ENSMUSG00000074247	Dda1	1500034J01Rik|1700095J19Rik|R74921	DET1 and DDB1 associated 1	protein-coding	1.5	13.0	8.5	8.5	29.0	15.0
Merged-chr2-19552827-2	chr2	19552327	19553327	+	914.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027600, intron 1 of 16)	intron (NM_027600, intron 1 of 16)	1083.0	NM_027600	70909.0	Mm.158488	NM_027600	ENSMUSG00000026734	4921504E06Rik	4921522E24Rik	RIKEN cDNA 4921504E06 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-6335472-3	chr18	6334955	6335955	+	914.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-93931.0	NM_008448	16573.0	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113626226-2	chr6	113625726	113626726	+	914.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009507, intron 1 of 2)	B3|SINE|B2	2205.0	NM_009507	22346.0	Mm.29407	NM_009507	ENSMUSG00000033933	Vhl	Vhlh	von Hippel-Lindau tumor suppressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-39318921-1	chr8	39318421	39319421	+	914.0	f0_balb.idr	intron (NR_044988, intron 2 of 3)	Lx6|LINE|L1	20941.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	3.0	8.5	4.0	7.5	19.0	6.5
Merged-chr10-120980011-4	chr10	120979505	120980505	+	914.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081193)	promoter-TSS (NM_001081193)	-675.0	NM_001081193	380664.0	Mm.339371	NM_001081193	ENSMUSG00000048661	Lemd3	AI316861|Man1	LEM domain containing 3	protein-coding	1.0	4.0	0.0	0.0	7.0	1.0
Merged-chr10-122820987-1	chr10	122820487	122821487	+	914.0	f0_balb.idr	intron (NM_001110218, intron 4 of 9)	intron (NM_001110218, intron 4 of 9)	141672.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0.0	1.5	1.0	9.5	6.0	2.0
Merged-chr13-118714796-2	chr13	118714296	118715296	+	914.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008002)	promoter-TSS (NM_008002)	97.0	NM_008002	14165.0	Mm.317323	NM_008002	ENSMUSG00000021732	Fgf10	AEY17|BB213776|Fgf-10|Gsfaey17	fibroblast growth factor 10	protein-coding	0.0	10.0	0.0	0.0	0.0	0.5
Merged-chr17-56425705-4	chr17	56425225	56426225	+	914.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011218, exon 14 of 33)	exon (NM_011218, exon 14 of 33)	-6816.0	NR_105943	102465590.0		NR_105943	ENSMUSG00000098339	Mir6977	Gm27922|mmu-mir-6977	microRNA 6977	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-30357976-4	chr6	30357459	30358459	+	914.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33061.0	NM_172735	232679.0	Mm.29780	NM_172735	ENSMUSG00000039130	Zc3hc1	1110054L24Rik|AU018540|AU019789|HSPC216|Nipa	zinc finger, C3HC type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-144253660-2	chr5	144253160	144254160	+	914.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163709, intron 1 of 2)	B2_Mm2|SINE|B2	-1565.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr1-14507444-2	chr1	14506944	14507944	+	914.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-197245.0	NM_010164	14048.0	Mm.250185	NM_010164	ENSMUSG00000025932	Eya1	bor	EYA transcriptional coactivator and phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62847117-3	chr11	62846639	62847639	+	914.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291441)	promoter-TSS (NM_001291441)	16.0	NM_001291441	213980.0	Mm.482259	NM_001033669	ENSMUSG00000090173	Fbxw10	Fbw10|HREP|SM25H2|SM2SH2	F-box and WD-40 domain protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-84816398-2	chr11	84815898	84816898	+	914.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145433, intron 2 of 4)	B4A|SINE|B4	3117.0	NM_145433	217038.0	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik	mitochondrial rRNA methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17648943-4	chr17	17648425	17649425	+	914.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24436.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-59579866-1	chr12	59579366	59580366	+	914.0	f0_balb.idr	Intergenic	Intergenic	-360383.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-28410211-3	chr6	28409697	28410697	+	914.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	11527.0	NM_028900	74375.0	Mm.332950	NM_028900	ENSMUSG00000029708	Gcc1	4932417P04Rik	golgi coiled coil 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80623178-3	chr10	80622662	80623662	+	914.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134002, intron 1 of 10)	intron (NM_134002, intron 1 of 10)	382.0	NM_134002	103236.0	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-33939414-2	chr14	33938914	33939914	+	914.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1625.0	NM_019506	12165.0	Mm.422844	NM_019506	ENSMUSG00000072625	Gdf2	Bmp9	growth differentiation factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36640665-2	chr16	36640165	36641165	+	914.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	25412.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41310362-1	chr19	41309862	41310862	+	914.0	f1_balb.idr	intron (NM_031376, intron 8 of 16)	intron (NM_031376, intron 8 of 16)	-46358.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	7.5	2.5	2.5	7.0	5.0	2.5
Merged-chr11-64837955-4	chr11	64837455	64838455	+	913.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-141080.0	NM_023479	68626.0	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	18.0	17.5	8.5	0.0	2.5	7.5
Merged-chr11-46448063-7	chr11	46447517	46448517	+	913.957153	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6914.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165487027-4	chr2	165486528	165487528	+	913.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6286.0	NM_001007581	381406.0	Mm.330785	NM_001007581	ENSMUSG00000039725	Trp53rka	2810408M09Rik	transformation related protein 53 regulating kinase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-85138741-3	chr16	85138238	85139238	+	913.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	34969.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	9.0	34.5	19.5	16.0	56.5	18.0
Merged-chr6-15816623-3	chr6	15816096	15817096	+	913.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95935.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-67586548-4	chr11	67586070	67587070	+	913.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001109657)	promoter-TSS (NM_001109657)	70.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89339569-4	chr3	89339065	89340065	+	913.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009614)	TTS (NM_009614)	-1537.0	NM_007910	13639.0	Mm.16332	NM_007910	ENSMUSG00000028040	Efna4	EFL-4|Epl4|LERK-4	ephrin A4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-121867150-3	chr2	121866755	121867755	+	913.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205371)	promoter-TSS (NM_001205371)	285.0	NM_001205369	319996.0	Mm.292109	NM_177054	ENSMUSG00000060227	Casc4	D130060C09Rik|VGFG2573	cancer susceptibility candidate 4	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr1-52847795-4	chr1	52847308	52848308	+	913.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146108, intron 1 of 13)	MTC|LTR|ERVL-MaLR	2770.0	NM_146108	227095.0	Mm.222063	NM_146108	ENSMUSG00000041426	Hibch	2610509I15Rik|HIBYL-COA-H	3-hydroxyisobutyryl-Coenzyme A hydrolase	protein-coding	0.0	2.5	2.0	0.0	0.0	1.0
Merged-chr8-94364873-4	chr8	94364382	94365382	+	913.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019415, intron 24 of 24)	intron (NM_019415, intron 24 of 24)	-21547.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-49643925-4	chr18	49643419	49644419	+	913.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111682.0	NM_001170960	68857.0	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-35081306-4	chr13	35080795	35081795	+	913.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	86509.0	NR_153831	75197.0	Mm.234091	NR_153831	ENSMUSG00000113906	4930529N20Rik	-	RIKEN cDNA 4930529N20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-72380832-4	chr4	72380342	72381342	+	913.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	179598.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-121329526-3	chr1	121328999	121329999	+	913.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178082, intron 1 of 5)	MTEb|LTR|ERVL-MaLR	-1475.0	NM_133748	72999.0	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	3.5	6.0	8.5	11.0	7.0	16.5
Merged-chr4-36013012-3	chr4	36012517	36013517	+	913.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166000, intron 7 of 8)	intron (NM_001166000, intron 7 of 8)	-167813.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27342765-3	chr7	27342294	27343294	+	913.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138676, intron 16 of 17)	intron (NM_138676, intron 16 of 17)	-5182.0	NM_175641	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0.0	11.0	2.0	0.0	5.0	2.0
Merged-chr14-26466128-4	chr14	26465628	26466628	+	913.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 5 of 22)	intron (NM_001310445, intron 5 of 22)	68496.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-12174934-4	chr2	12174428	12175428	+	913.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001309, intron 22 of 29)	intron (NM_001001309, intron 22 of 29)	-126318.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146675388-4	chr5	146674882	146675882	+	913.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90143.0	NM_001359057	14738.0	Mm.153539	NM_008151	ENSMUSG00000041468	Gpr12	Gpcr01|Gpcr12|Gpcr20|Gpcr21	G-protein coupled receptor 12	protein-coding	4.5	1.0	8.0	2.0	0.0	2.0
Merged-chr18-79110222-4	chr18	79109739	79110739	+	913.875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053099)	promoter-TSS (NM_053099)	-848.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46254327-2	chr17	46253827	46254827	+	913.875	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001111142, exon 1 of 6)	5' UTR (NM_001111142, exon 1 of 6)	162.0	NM_001111142	224813.0	Mm.70999	NM_001111142	ENSMUSG00000071073	Lrrc73	Gm88	leucine rich repeat containing 73	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130731420-4	chr2	130730936	130731936	+	913.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029432, intron 27 of 36)	L2a|LINE|L2	-33917.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	29.5	93.0	58.0	23.5	120.0	49.5
Merged-chr14-73325434-4	chr14	73324943	73325943	+	913.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 1 of 26)	CpG	379.0	NM_009029	19645.0	Mm.273862	NM_009029	ENSMUSG00000022105	Rb1	Rb|Rb-1|pRb|pp105	RB transcriptional corepressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132569007-4	chr7	132568518	132569518	+	913.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016978, intron 2 of 9)	intron (NM_016978, intron 2 of 9)	7380.0	NM_016978	18242.0	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70867995-3	chr14	70867507	70868507	+	913.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045939, intron 2 of 3)	Lx|LINE|L1	15074.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	0.0	1.0	9.0	23.5	26.0	18.0
Merged-chr2-90458257-2	chr2	90457757	90458757	+	913.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001135657, exon 10 of 26)	exon (NM_001135657, exon 10 of 26)	20917.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-42259448-2	chr18	42258948	42259948	+	913.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_134137, intron 1 of 31)	intron (NM_134137, intron 1 of 31)	2623.0	NM_134137	107045.0	Mm.312170	NM_134137	ENSMUSG00000024493	Lars	2310045K21Rik|3110009L02Rik|AW536573|mKIAA1352	leucyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-91377016-4	chr8	91376518	91377518	+	913.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011936, intron 1 of 8)	intron (NM_011936, intron 1 of 8)	63493.0	NM_011936	26383.0	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	0.0	4.0	19.5	3.5	9.5	2.5
Merged-chr4-58909927-4	chr4	58909440	58910440	+	913.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355697, intron 1 of 49)	L1MB3|LINE|L1	1990.0	NM_001355697	230249.0	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|Ecpas|mKIAA0368	expressed sequence AI314180	protein-coding	5.0	7.0	4.0	1.5	16.0	1.5
Merged-chr17-35059788-4	chr17	35059288	35060288	+	913.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016765, intron 1 of 6)	intron (NM_016765, intron 1 of 6)	753.0	NM_016765	51793.0	Mm.1457	NM_016765	ENSMUSG00000007039	Ddah2	1110003M04Rik|AU019324|AW413173|DDAH-2|DDAHII|Ddah|G6a|NG30	dimethylarginine dimethylaminohydrolase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19910940-3	chr7	19910429	19911429	+	913.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027514, intron 4 of 7)	intron (NM_027514, intron 4 of 7)	10214.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57528674-4	chr16	57528224	57529224	+	913.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-20518.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	9.0	27.5	9.5	10.0	39.0	24.5
Merged-chr10-127513648-2	chr10	127513148	127514148	+	913.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1291.0	NM_001098789	407790.0	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr17-45590879-3	chr17	45590427	45591427	+	913.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199113, intron 3 of 13)	intron (NM_001199113, intron 3 of 13)	1466.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-107610989-3	chr7	107610478	107611478	+	913.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163557, intron 1 of 25)	RMER19B|LTR|ERVK	4134.0	NM_001163557	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26142077-2	chr2	26141577	26142577	+	913.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1571.0	NM_001256521	109299.0	Mm.389259	NM_001256521		Tmem250-ps	AI551216|C330006A16Rik	transmembrane protein 250, pseudogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-15332307-3	chr3	15331815	15332815	+	913.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001076679)	promoter-TSS (NM_001076679)	-13.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	4.5	9.0	2.0	6.5	1.0	16.0
Merged-chr11-23124583-4	chr11	23124084	23125084	+	913.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CCCCG)n|Simple_repeat|Simple_repeat	-27556.0	NR_131065	76993.0	Mm.59224	NR_131065	ENSMUSG00000086366	1700061J23Rik	-	RIKEN cDNA 1700061J23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-106794648-4	chr6	106794153	106795153	+	913.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021449, intron 3 of 10)	intron (NM_021449, intron 3 of 10)	5434.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-58655505-4	chr3	58654987	58655987	+	913.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3445.0	NR_004433	666680.0	Mm.422212	NR_004433		Gm8234	AU022133	spermine synthase pseudogene	pseudo	0.0	0.0	2.0	0.5	0.0	0.5
Merged-chr2-173224214-4	chr2	173223707	173224707	+	913.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_022995)	TTS (NM_022995)	-5285.0	NM_001139519	58203.0	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-149281569-4	chr3	149281049	149282049	+	913.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6812.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	10.5	4.0	4.5	3.0	24.0	11.5
Merged-chr4-63307529-4	chr4	63307020	63308020	+	913.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025685, intron 36 of 60)	intron (NM_025685, intron 36 of 60)	-37036.0	NM_008768	18405.0	Mm.4777	NM_008768	ENSMUSG00000039196	Orm1	Agp-1|Agp-2|Orm-1	orosomucoid 1	protein-coding	0.0	2.5	1.5	0.0	2.5	0.0
Merged-chr13-37592274-4	chr13	37591777	37592777	+	913.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-233761.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81837267-2	chr15	81836731	81837731	+	913.783325	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21095.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	36.0	57.5	48.0	46.5	77.5	59.0
Merged-chr10-61370997-3	chr10	61370485	61371485	+	913.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013753, intron 1 of 19)	intron (NM_013753, intron 1 of 19)	12538.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87595630-3	chr11	87595144	87596144	+	913.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133215, intron 2 of 18)	CpG	3478.0	NM_133215	170749.0	Mm.399376	NM_133215	ENSMUSG00000018401	Mtmr4	AA596759|ESTM44|FYVE-DSP2|ZFYVE11|mKIAA0647	myotubularin related protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-97777293-3	chr4	97776778	97777778	+	913.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122953)	promoter-TSS (NM_001122953)	-348.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32560015-4	chr4	32559526	32560526	+	913.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_026843, exon 5 of 5)	non-coding (NR_026843, exon 5 of 5)	11636.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	22.5	103.0	65.5	63.0	60.5	51.5
Merged-chr2-180124853-3	chr2	180124350	180125350	+	913.755554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144500, intron 1 of 13)	intron (NM_144500, intron 1 of 13)	5484.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	2.0	2.0	1.5	7.0	9.5	14.0
Merged-chr12-80922131-4	chr12	80921635	80922635	+	913.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	2312.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20961611-4	chr18	20961134	20962134	+	913.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026301, intron 1 of 5)	CpG	17009.0	NM_026301	67664.0	Mm.45980	NM_026301	ENSMUSG00000033107	Rnf125	4930553F04Rik	ring finger protein 125	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21571371-4	chr19	21570830	21571830	+	913.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81461.0	NM_025423	66206.0	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84831801-4	chr2	84831293	84832293	+	913.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4772.0	NM_013899	30059.0	Mm.21826	NM_013899	ENSMUSG00000027076	Timm10	Tim13|Timm13a	translocase of inner mitochondrial membrane 10	protein-coding	7.5	0.0	1.0	0.0	0.0	1.5
Merged-chr14-41006428-4	chr14	41005933	41006933	+	913.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316732, intron 1 of 6)	intron (NM_001316732, intron 1 of 6)	487.0	NM_001316739	70564.0	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-82763595-4	chr10	82763054	82764054	+	913.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010914, intron 1 of 7)	CpG	587.0	NM_010914	18045.0	Mm.245998	NM_010914	ENSMUSG00000020248	Nfyb	AA985999|Cbf-A	nuclear transcription factor-Y beta	protein-coding	11.5	24.0	33.5	3.5	19.0	17.5
Merged-chr10-59238700-2	chr10	59238200	59239200	+	913.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	16778.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168206443-4	chr2	168205893	168206893	+	913.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310086, intron 1 of 4)	CpG	719.0	NM_009628	11538.0	Mm.201322	NM_009628	ENSMUSG00000051149	Adnp	AA589558|mKIAA0784	activity-dependent neuroprotective protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114866370-2	chr11	114865870	114866870	+	913.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110338, intron 2 of 3)	(TG)n|Simple_repeat|Simple_repeat	14340.0	NM_147217	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25256905-4	chr2	25256358	25257358	+	913.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177344)	TTS (NM_177344)	1419.0	NM_177344	227615.0	Mm.213925	NM_177344	ENSMUSG00000078201	Tmem203	C730025P13Rik|Hbebp1	transmembrane protein 203	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21113700-6	chr5	21113227	21114227	+	913.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-57816.0	NM_011203	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112145428-4	chr12	112144955	112145955	+	913.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001097621)	promoter-TSS (NM_001097621)	-753.0	NM_001097621	668303.0	Mm.313104	NM_001097621	ENSMUSG00000021294	Kif26a	mKIAA1236	kinesin family member 26A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86596349-3	chr11	86595810	86596810	+	913.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 10 of 11)	intron (NM_001356531, intron 10 of 11)	-12152.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20219511-2	chr13	20219010	20220010	+	913.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 4 of 21)	intron (NM_080288, intron 4 of 21)	129003.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	1.5	3.5	2.0	8.0	11.0	1.0
Merged-chr4-126702680-4	chr4	126702183	126703183	+	913.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011970, intron 3 of 5)	intron (NM_011970, intron 3 of 5)	25040.0	NM_011970	26445.0	Mm.22233	NM_011970	ENSMUSG00000028837	Psmb2	AU045357|AW108089|C7-I|D4Wsu33e|HC7-I	proteasome (prosome, macropain) subunit, beta type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99181561-2	chr9	99181061	99182061	+	913.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-41350.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-72282782-4	chr1	72282281	72283281	+	913.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356516, intron 1 of 6)	intron (NM_001356516, intron 1 of 6)	1540.0	NM_023523	111175.0	Mm.281738	NM_023523	ENSMUSG00000026189	Pecr	2400003B18Rik|TERP	peroxisomal trans-2-enoyl-CoA reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59596795-4	chr4	59596285	59597285	+	913.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301367, intron 5 of 11)	intron (NM_001301367, intron 5 of 11)	15222.0	NM_024255	72479.0	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20774055-4	chr10	20773518	20774518	+	913.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-48940.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	25.0	64.0	32.5	15.0	46.0	24.5
Merged-chr6-87153131-4	chr6	87152639	87153639	+	913.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054041, intron 17 of 17)	ORR1F|LTR|ERVL-MaLR	48393.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-45145340-4	chr16	45144859	45145859	+	913.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028756, intron 5 of 6)	intron (NM_028756, intron 5 of 6)	13314.0	NM_001356453	74102.0	Mm.264984	NM_028756	ENSMUSG00000022664	Slc35a5	1010001J06Rik|AU021179|BB097433|D16Ertd450e|D730043G07Rik	solute carrier family 35, member A5	protein-coding	3.0	0.0	3.0	1.5	6.0	1.5
Merged-chr17-87293326-4	chr17	87292814	87293814	+	913.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 3 of 19)	intron (NM_028639, intron 3 of 19)	10428.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-60502424-6	chr3	60501886	60502886	+	913.694458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	1207.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126876658-4	chr8	126876114	126877114	+	913.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27594.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33177849-4	chr16	33177344	33178344	+	913.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-7227.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68434200-3	chr10	68433704	68434704	+	913.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028491, intron 7 of 7)	intron (NM_028491, intron 7 of 7)	107671.0	NM_028491	73287.0	Mm.141830	NM_028491	ENSMUSG00000019945	Cabcoco1	1700040L02Rik	ciliary associated calcium binding coiled-coil 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-177443236-5	chr1	177442762	177443762	+	913.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355101, exon 2 of 4)	5' UTR (NM_001355101, exon 2 of 4)	911.0	NM_001355100	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-29852687-3	chr5	29852191	29853191	+	913.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-116755.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34380780-4	chr18	34380278	34381278	+	913.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7363.0	NM_007874	13476.0	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57643979-4	chr9	57643501	57644501	+	913.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 2 of 14)	intron (NM_001304761, intron 2 of 14)	1652.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12439322-4	chr19	12438810	12439810	+	913.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11405.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	57.5	150.5	85.0	54.0	137.0	114.5
Merged-chr4-108879067-3	chr4	108878546	108879546	+	913.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023537)	promoter-TSS (NM_023537)	-24.0	NM_023537	69908.0	Mm.41580	NM_023537	ENSMUSG00000003411	Rab3b	2610528C18Rik	RAB3B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36123667-3	chr17	36123216	36124216	+	913.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-2272.0	NR_046286	15024.0	Mm.426031	NM_010395	ENSMUSG00000079491	H2-T10	H-2T10	histocompatibility 2, T region locus 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110379812-4	chr11	110379300	110380300	+	913.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19302.0	NM_001356345	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80131622-3	chr17	80131110	80132110	+	913.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176963, intron 1 of 6)	intron (NM_176963, intron 1 of 6)	4139.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27778034-4	chr17	27777475	27778475	+	913.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033279, intron 3 of 4)	intron (NM_001033279, intron 3 of 4)	42567.0	NM_001033279	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr9-64120076-2	chr9	64119576	64120576	+	913.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145835, intron 5 of 13)	MLT1A1|LTR|ERVL-MaLR	2929.0	NM_145835	235435.0	Mm.436581	NM_145835	ENSMUSG00000032401	Lctl	E130104I05Rik|KLPH	lactase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84293143-4	chr18	84292636	84293636	+	913.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 8 of 8)	intron (NM_001033341, intron 8 of 8)	204978.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80389564-2	chr7	80389051	80390051	+	913.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081454, exon 16 of 16)	3' UTR (NM_001081454, exon 16 of 16)	-1605.0	NM_010194	14159.0	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	4.0	18.5	5.5	6.0	18.5	8.5
Merged-chr19-6244452-2	chr19	6243952	6244952	+	913.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_194348, exon 2 of 40)	exon (NM_194348, exon 2 of 40)	2784.0	NM_194348	329015.0	Mm.277384	NM_194348	ENSMUSG00000024773	Atg2a	1810013C15Rik|A830054M12|BC023754|mKIAA0404	autophagy related 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-3018915-6	chr9	3018506	3019506	+	913.6527710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	19737.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142551161-4	chr5	142550637	142551637	+	913.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289588)	promoter-TSS (NM_001289588)	-39.0	NM_001289588	231858.0	Mm.33766	NM_178702	ENSMUSG00000029576	Radil	AI536456|D930005D10Rik	Ras association and DIL domains	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-76346269-4	chr10	76345761	76346761	+	913.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081419)	promoter-TSS (NM_001081419)	-970.0	NM_001081419	64451.0	Mm.33183	NM_001081419	ENSMUSG00000020231	Dip2a	4931420H10Rik|AI426328|Dip2|Kiaa0184-hp|mKIAA0184	disco interacting protein 2 homolog A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154986231-2	chr4	154985731	154986731	+	913.625	f1_balb.idr|f1_c57bl6.idr	exon (NM_175556, exon 21 of 23)	exon (NM_175556, exon 21 of 23)	22108.0	NR_131230	269614.0	Mm.30042	NM_172990	ENSMUSG00000029056	Pank4	D030031I12Rik|R75150	pantothenate kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr14-31410397-4	chr14	31409886	31410886	+	913.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	7291.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32968251-2	chr2	32967751	32968751	+	913.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	4950.0	NR_002898	104367.0	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112743362-4	chr12	112742859	112743859	+	913.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024602, intron 14 of 18)	intron (NM_001024602, intron 14 of 18)	10037.0	NR_105905	102466989.0		NR_105905	ENSMUSG00000099165	Mir6940	Gm27655|mmu-mir-6940	microRNA 6940	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119811903-5	chr8	119811325	119812325	+	913.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 3 of 3)	intron (NM_028071, intron 3 of 3)	28754.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-34307005-4	chr15	34306422	34307422	+	913.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358780, intron 1 of 18)	CpG	241.0	NM_016762	17181.0	Mm.396856	NM_016762	ENSMUSG00000022324	Matn2	Crtm2|matrilin-2	matrilin 2	protein-coding	8.0	2.5	2.5	1.0	3.5	1.0
Merged-chr14-120876103-2	chr14	120875603	120876603	+	913.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35091.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116184102-3	chr3	116183587	116184587	+	913.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54399.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-14065012-4	chr14	14064505	14065505	+	913.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139227, intron 4 of 11)	intron (NM_139227, intron 4 of 11)	52514.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137836043-5	chr4	137835468	137836468	+	913.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26269.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	13.5	36.0	25.5	24.5	19.5	14.5
Merged-chr7-4370654-3	chr7	4370130	4371130	+	913.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163014, intron 6 of 7)	MTA_Mm|LTR|ERVL-MaLR	27114.0	NM_001163014	243816.0	Mm.248662	NM_001163014	ENSMUSG00000078810	Gp6	9830166G18Rik|Gm469|Gpvi	glycoprotein 6 (platelet)	protein-coding	0.0	15.5	6.5	0.0	0.0	3.5
Merged-chr8-94171593-6	chr8	94171064	94172064	+	913.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1054.0	NM_008630	17750.0	Mm.147226	NM_008630	ENSMUSG00000031762	Mt2	AA409533|MT-II|Mt-2	metallothionein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121871203-6	chr5	121870677	121871677	+	913.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007804, intron 17 of 22)	intron (NM_007804, intron 17 of 22)	22180.0	NM_001359949	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	0.0	5.0	0.5	2.5	4.5	3.5
Merged-chr15-98957386-4	chr15	98956892	98957892	+	913.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3891.0	NM_011653	22142.0	Mm.405359	NM_011653	ENSMUSG00000072235	Tuba1a	Tuba-1|Tuba1	tubulin, alpha 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-52284426-4	chr12	52283923	52284923	+	913.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029760, intron 7 of 10)	intron (NM_029760, intron 7 of 10)	186677.0	NM_029760	76826.0	Mm.244781	NM_029760	ENSMUSG00000035142	Nubpl	2410170E07Rik	nucleotide binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-94629131-4	chr15	94628667	94629667	+	913.505981	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178789)	promoter-TSS (NM_178789)	-18.0	NM_178789	320709.0	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45491084-2	chr7	45490584	45491584	+	913.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290999, intron 1 of 9)	intron (NM_001290999, intron 1 of 9)	-2279.0	NM_027903	71755.0	Mm.34208	NM_027903	ENSMUSG00000011382	Dhdh	1300018L09Rik|AA591799|B830008H07Rik|Xld-1|Xld1	dihydrodiol dehydrogenase (dimeric)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-121832699-2	chr2	121832199	121833199	+	913.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25642.0	NM_172673	228564.0	Mm.121514	NM_172673	ENSMUSG00000027238	Frmd5	1500032A09Rik|A930004K21Rik|R75430	FERM domain containing 5	protein-coding	1.0	0.5	1.0	0.0	8.5	12.0
Merged-chr2-165882639-2	chr2	165882139	165883139	+	913.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281926)	promoter-TSS (NM_001281926)	-361.0	NM_001281926	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	27.5	70.5	43.0	12.0	61.0	44.0
Merged-chr11-118138813-2	chr11	118138313	118139313	+	913.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	-9594.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-22747156-4	chr10	22746652	22747652	+	913.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15705.0	NM_011603	237336.0	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79827148-2	chr10	79826648	79827648	+	913.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_030218, exon 2 of 5)	exon (NM_030218, exon 2 of 5)	6127.0	NM_030218	78906.0	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-124442452-2	chr9	124441952	124442952	+	913.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18665.0	NR_015516	75135.0	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7583372-4	chr19	7582860	7583860	+	913.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362425, intron 4 of 4)	intron (NM_001362425, intron 4 of 4)	23833.0	NM_001356574	56072.0	Mm.298242	NM_019516	ENSMUSG00000024972	Lgals12	Grip1|gal-12	lectin, galactose binding, soluble 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37517707-3	chr9	37517202	37518202	+	913.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146222, intron 2 of 3)	intron (NM_146222, intron 2 of 3)	-10387.0	NR_136939	69524.0	Mm.41751	NM_027102	ENSMUSG00000001946	Esam	2310008D05Rik|Esam1|W117m	endothelial cell-specific adhesion molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34528869-2	chr5	34528369	34529369	+	913.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	3085.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-33110023-4	chr19	33109525	33110525	+	913.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47087.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-90252909-2	chr11	90252409	90253409	+	913.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026178, intron 1 of 6)	intron (NM_026178, intron 1 of 6)	3433.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23564534-2	chr13	23564034	23565034	+	913.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2169.0	NM_178205	319151.0	Mm.261658	NM_178205	ENSMUSG00000069273	Hist1h3e	H3-f|H3.1	histone cluster 1, H3e	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88206941-2	chr7	88206441	88207441	+	913.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71144.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34876199-4	chr6	34875742	34876742	+	913.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199145, intron 2 of 3)	intron (NM_199145, intron 2 of 3)	1823.0	NM_199145	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6388694-4	chr4	6388191	6389191	+	913.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 6 of 8)	intron (NM_001098227, intron 6 of 8)	23011.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33185807-2	chr2	33185307	33186307	+	913.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290570, intron 7 of 16)	intron (NM_001290570, intron 7 of 16)	-30154.0	NM_011923	26360.0	Mm.208919	NM_011923	ENSMUSG00000004105	Angptl2	AI593246|AW260363|Arp2	angiopoietin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117131666-2	chr4	117131164	117132164	+	913.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013807, exon 7 of 15)	exon (NM_013807, exon 7 of 15)	2299.0	NM_013807	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	0.0	0.0	1.0	0.0	0.0	1.5
Merged-chr13-111977960-4	chr13	111977494	111978494	+	913.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	110058.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	1.0	7.0	2.0	0.0	2.5	11.5
Merged-chr3-10022677-2	chr3	10022177	10023177	+	913.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10092.0	NM_001272098	16592.0	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	6.0	0.5	0.0	4.0	0.0	1.0
Merged-chr3-88548575-2	chr3	88548075	88549075	+	913.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016899)	promoter-TSS (NM_016899)	-296.0	NM_016899	53868.0	Mm.26994	NM_016899	ENSMUSG00000008601	Rab25	AV012978	RAB25, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91002297-3	chr2	91001802	91002802	+	913.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198683, intron 4 of 13)	intron (NM_198683, intron 4 of 13)	-33325.0	NM_009023	19400.0	Mm.1272	NM_009023	ENSMUSG00000002104	Rapsn	43kDa|Nraps|Raps|rapsyn	receptor-associated protein of the synapse	protein-coding	13.0	9.0	16.0	0.0	18.0	25.0
Merged-chr1-151079146-2	chr1	151078646	151079646	+	913.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58888.0	NR_038011	402734.0	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-11669240-2	chr18	11668740	11669740	+	913.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081223, intron 2 of 18)	intron (NM_001081223, intron 2 of 18)	11891.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	3.0	6.5	2.5	3.0	6.5	5.0
Merged-chr2-73912439-2	chr2	73911939	73912939	+	913.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-1113.0	NM_001301722	228033.0	Mm.2966	NM_175015	ENSMUSG00000018770	Atp5g3	6030447M23	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76547768-2	chr12	76547268	76548268	+	913.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_046044, exon 1 of 3)	non-coding (NR_046044, exon 1 of 3)	157.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135012231-4	chr5	135011707	135012707	+	913.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001190437)	TTS (NM_001190437)	950.0	NR_026688	69812.0	Mm.18422	NR_026688	ENSMUSG00000085042	Abhd11os	2010001M06Rik|AI462243|Wbscr26|Wnscr26	abhydrolase domain containing 11, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145168205-4	chr2	145167709	145168709	+	913.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356497, intron 1 of 16)	CpG	434.0	NM_001356497	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3651738-4	chr4	3651249	3652249	+	913.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-4757.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	11.0	11.0	13.5	2.5	14.0	12.0
Merged-chr9-119936792-3	chr9	119936345	119937345	+	913.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028735)	promoter-TSS (NM_028735)	713.0	NM_028976	74498.0	Mm.104789	NM_028976	ENSMUSG00000032513	Gorasp1	5430411C10Rik|GOLPH5|GRASP65|P65	golgi reassembly stacking protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62503353-5	chr10	62502829	62503829	+	913.4381099999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 2 of 3)	B2_Mm2|SINE|B2	4428.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44397989-3	chr19	44397504	44398504	+	913.43335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009127, exon 6 of 6)	exon (NM_009127, exon 6 of 6)	9705.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35890884-4	chr12	35890370	35891370	+	913.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34751.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	0.0	0.0	2.5	0.0	0.0	3.0
Merged-chr10-93273581-4	chr10	93273143	93274143	+	913.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001322265, intron 2 of 4)	intron (NM_001322265, intron 2 of 4)	37516.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	10.0	2.5	5.0	25.0	36.0	16.5
Merged-chr3-90585814-2	chr3	90585314	90586314	+	913.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355597, intron 1 of 2)	intron (NM_001355597, intron 1 of 2)	-1138.0	NM_001355600	20197.0	Mm.440044	NM_011310	ENSMUSG00000001021	S100a3	S100E	S100 calcium binding protein A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33563305-4	chr17	33562815	33563815	+	913.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053214, intron 1 of 27)	intron (NM_053214, intron 1 of 27)	7608.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	82.5	149.0	84.0	51.0	105.0	63.5
Merged-chr10-122116792-4	chr10	122116302	122117302	+	913.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-2895.0	NR_027637	100043513.0	Mm.429141	NR_027637	ENSMUSG00000111952	Gm4489	Gm241	predicted gene 4489	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-135977063-4	chr6	135976526	135977526	+	913.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008171, intron 4 of 14)	intron (NM_008171, intron 4 of 14)	196485.0	NM_008171	14812.0	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	0.5	0.0	3.5	1.0	1.5	0.5
Merged-chr2-129895552-4	chr2	129895058	129896058	+	913.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94099.0	NR_029452	654409.0	Mm.305555	NR_029452		Stk35os1	4932416H05Rik	serine/threonine kinase 35, opposite strand 1	ncRNA	14.5	33.0	17.5	117.0	123.5	97.0
Merged-chr10-80145485-6	chr10	80144893	80145893	+	913.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025313, intron 3 of 3)	intron (NM_025313, intron 3 of 3)	-2879.0	NM_001305798	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173630790-4	chr1	173630290	173631290	+	913.3583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175026)	promoter-TSS (NM_175026)	-69.0	NM_175026	236312.0	Mm.447	NM_175026	ENSMUSG00000043263	Ifi209	4930422C14|AI447904|Ifix|Pyhin-1|Pyhin1	interferon activated gene 209	protein-coding	21.0	71.5	65.0	24.5	47.5	40.0
Merged-chr2-118012434-4	chr2	118011922	118012922	+	913.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	Lx9|LINE|L1	98780.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	0.5	28.0	6.5	1.0	8.5	2.0
Merged-chr11-21452787-4	chr11	21452293	21453293	+	913.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	58387.0	NR_028259	237694.0	Mm.72926	NM_172792	ENSMUSG00000078962	4932414J04Rik	-	RIKEN cDNA 4932414J04 gene	ncRNA	8.0	7.5	7.0	7.0	14.0	11.0
Merged-chr17-33993976-2	chr17	33993567	33994567	+	913.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6266.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	8.0	16.5	10.5	2.0	21.5	9.0
Merged-chr7-6173293-3	chr7	6172731	6173731	+	913.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028316, intron 1 of 3)	intron (NM_028316, intron 1 of 3)	718.0	NM_001146024	72667.0	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24206690-3	chr17	24206196	24207196	+	913.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010947, exon 6 of 6)	exon (NM_010947, exon 6 of 6)	-1134.0	NM_001163850	224617.0	Mm.301585	NM_173186	ENSMUSG00000036473	Tbc1d24	9630033P11|C530046L02Rik|mKIAA1171	TBC1 domain family, member 24	protein-coding	2.0	1.5	3.0	0.0	0.0	4.5
Merged-chr1-36131865-3	chr1	36131357	36132357	+	913.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12456.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120096409-3	chr2	120095907	120096907	+	913.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 5 of 5)	intron (NM_133838, intron 5 of 5)	58168.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	1.5	6.0	7.0	7.0	5.0	3.0
Merged-chr7-143008741-3	chr7	143008250	143009250	+	913.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020286, intron 2 of 7)	intron (NM_020286, intron 2 of 7)	3091.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	3.0	14.5	4.0	9.0	2.0	11.0
Merged-chr13-63563354-6	chr13	63562859	63563859	+	913.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008957, intron 2 of 23)	CpG	2376.0	NM_008957	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125482491-2	chr6	125481991	125482991	+	913.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_007657, intron 1 of 7)	intron (NM_007657, intron 1 of 7)	12269.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	25.0	41.5	16.5	9.0	13.0	2.5
Merged-chr4-43372365-1	chr4	43371865	43372865	+	913.3333130000001	f0_balb.idr	intron (NM_177195, intron 27 of 28)	intron (NM_177195, intron 27 of 28)	-9617.0	NM_001037709	100213.0	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	0.0	4.0	0.0	0.0	0.0	0.0
Merged-chr6-22459640-3	chr6	22459139	22460139	+	913.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR48B|LTR|ERV1	-103558.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156735868-4	chr1	156735357	156736357	+	913.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16947.0	NM_145413	215015.0	Mm.229107	NM_145413	ENSMUSG00000033557	Fam20b	C530043G21Rik|mKIAA0475	family with sequence similarity 20, member B	protein-coding	15.0	0.0	12.0	11.5	6.0	4.5
Merged-chr7-44816855-3	chr7	44816365	44817365	+	913.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033136)	promoter-TSS (NR_033136)	-207.0	NR_033136	107503.0	Mm.389890	NM_030693	ENSMUSG00000038539	Atf5	AFTA|Atf7|Atfx|ODA-10	activating transcription factor 5	protein-coding	6.5	18.5	11.5	9.5	0.0	7.0
Merged-chr1-135659251-3	chr1	135658752	135659752	+	913.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60811.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152761977-4	chr1	152761471	152762471	+	913.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	4334.0	NM_001346119	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135661513-3	chr4	135661017	135662017	+	913.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24940.0	NM_174851	242700.0	Mm.259623	NM_174851	ENSMUSG00000062157	Ifnlr1	CRF2-12|Il28ra	interferon lambda receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-100366016-4	chr6	100365517	100366517	+	913.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78659.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127113994-3	chr2	127113515	127114515	+	913.283325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144818, intron 12 of 17)	intron (NM_144818, intron 12 of 17)	19939.0	NM_144818	215387.0	Mm.29786	NM_144818	ENSMUSG00000034906	Ncaph	A730011O11Rik|Brrn1|CAP-H|HCAP-H|mCAP-H	non-SMC condensin I complex, subunit H	protein-coding	22.0	1.5	3.5	22.0	1.5	3.5
Merged-chr5-74348548-5	chr5	74348061	74349061	+	913.2666630000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114660, intron 5 of 8)	intron (NM_001114660, intron 5 of 8)	153235.0	NM_026878	68939.0	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	14.5	10.5	29.0	0.5	0.0	2.0
Merged-chr11-97663419-8	chr11	97662847	97663847	+	913.2589109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139311)	promoter-TSS (NM_139311)	-65.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	8.0	9.5	4.5	5.5	15.0	5.5
Merged-chr9-57831497-4	chr9	57830991	57831991	+	913.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019689, intron 1 of 7)	intron (NM_019689, intron 1 of 7)	2743.0	NM_019689	56380.0	Mm.425588	NM_019689	ENSMUSG00000004661	Arid3b	Bdp|Dri2	AT rich interactive domain 3B (BRIGHT-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3624147-4	chr4	3623642	3624642	+	913.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32364.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33941238-2	chr17	33940768	33941768	+	913.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001185182)	promoter-TSS (NM_001185182)	545.0	NM_020603	57315.0	Mm.2437	NM_020603	ENSMUSG00000024312	Wdr46	2310007I04Rik|Bing4|C78447|C78559	WD repeat domain 46	protein-coding	29.5	87.5	38.5	33.5	94.0	54.0
Merged-chr17-34033486-4	chr17	34032960	34033960	+	913.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205214, intron 2 of 9)	intron (NM_001205214, intron 2 of 9)	1110.0	NM_001205215	20182.0	Mm.1243	NM_011306	ENSMUSG00000039656	Rxrb	AL023085|H-2RIIBP|Nr2b2|RCoR-1|Rub	retinoid X receptor beta	protein-coding	16.5	21.5	16.5	10.0	10.5	17.5
Merged-chr8-105510274-2	chr8	105509774	105510774	+	913.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8472.0	NM_008289	15484.0	Mm.5079	NM_008289	ENSMUSG00000031891	Hsd11b2	11HSD2	hydroxysteroid 11-beta dehydrogenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-38237813-3	chr3	38237328	38238328	+	913.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29709.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46571584-2	chr18	46571068	46572068	+	913.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_173394, intron 2 of 2)	intron (NM_173394, intron 2 of 2)	2965.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-30912226-4	chr12	30911735	30912735	+	913.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021330)	promoter-TSS (NM_021330)	566.0	NM_013709	24057.0	Mm.218624	NM_013709	ENSMUSG00000020669	Sh3yl1	AI314953|Ray|YSC84	Sh3 domain YSC-like 1	protein-coding	0.0	6.0	6.0	4.5	9.0	6.5
Merged-chr19-56398511-4	chr19	56398018	56399018	+	913.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007611, intron 1 of 6)	MTD|LTR|ERVL-MaLR	1389.0	NM_007611	12369.0	Mm.35687	NM_007611	ENSMUSG00000025076	Casp7	AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7	caspase 7	protein-coding	0.0	0.0	0.0	1.0	0.0	10.5
Merged-chr13-119596955-4	chr13	119596431	119597431	+	913.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177666, intron 2 of 3)	intron (NM_001177666, intron 2 of 3)	-26888.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141326797-2	chr7	141326297	141327297	+	913.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282073, intron 1 of 11)	intron (NM_001282073, intron 1 of 11)	928.0	NM_016874	54006.0	Mm.28392	NM_016874	ENSMUSG00000058886	Deaf1	AU042387|C230009B13Rik|NUDR	DEAF1, transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148900503-3	chr2	148900013	148901013	+	913.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25001.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8676825-3	chr11	8676336	8677336	+	913.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa-int|LTR|ERVL-MaLR	-12301.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55511733-4	chr1	55511232	55512232	+	913.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	105786.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	18.0	31.5	20.5	10.5	20.0	17.5
Merged-chr9-114730342-4	chr9	114729823	114730823	+	913.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026036)	promoter-TSS (NM_026036)	-880.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156537861-4	chr1	156537298	156538298	+	913.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-20989.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	54.5	86.0	72.5	48.0	70.0	79.0
Merged-chr10-111516314-5	chr10	111515731	111516731	+	913.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9945.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-79149032-2	chr7	79148544	79149544	+	913.2000119999999	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_008594)	promoter-TSS (NM_008594)	16.0	NM_001045489	17304.0	Mm.1451	NM_008594	ENSMUSG00000030605	Mfge8	AA408458|AI325141|MFG-E8|MP47|Mfgm|P47|SED1|lactadherin	milk fat globule-EGF factor 8 protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69062978-4	chr3	69062476	69063476	+	913.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18234.0	NM_025863	66949.0	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	0.0	2.0	1.0	0.0	1.5	3.0
Merged-chr19-42795135-4	chr19	42794628	42795628	+	913.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081257, intron 11 of 11)	intron (NM_001081257, intron 11 of 11)	-15150.0	NM_019424	192236.0	Mm.218381	NM_019424	ENSMUSG00000025188	Hps1	6030422N11Rik|BB405864|Gm21361|Hps|ep	HPS1, biogenesis of lysosomal organelles complex 3 subunit 1	protein-coding	3.5	0.0	0.0	0.0	1.5	0.0
Merged-chr10-60278714-4	chr10	60278269	60279269	+	913.1785890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011179, intron 1 of 14)	intron (NM_011179, intron 1 of 14)	1141.0	NM_001146121	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79210110-4	chr11	79209651	79210651	+	913.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32873.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	7.0	11.5	5.5	7.0	11.0	5.5
Merged-chr4-131921689-3	chr4	131921198	131922198	+	913.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001201367)	promoter-TSS (NM_001201367)	-73.0	NM_001201367	623230.0	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42004067-2	chr19	42003543	42004543	+	913.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	22280.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	7.0	32.0	11.0	18.0	21.0	14.0
Merged-chr5-53594540-1	chr5	53594040	53595040	+	913.1666869999999	f0_c57.idr	intron (NM_001359152, intron 1 of 9)	intron (NM_001359152, intron 1 of 9)	4054.0	NM_001080927	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20103856-4	chr11	20103372	20104372	+	913.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146243, intron 1 of 8)	intron (NM_146243, intron 1 of 8)	9079.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	11.0	37.0	26.5	5.5	8.0	11.0
Merged-chr7-45247829-4	chr7	45247344	45248344	+	913.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324535, intron 1 of 12)	B2_Mm2|SINE|B2	7091.0	NM_001324535	381884.0	Mm.490944	NM_001324535	ENSMUSG00000094152	Slc6a16	Gm1084	solute carrier family 6, member 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60905420-4	chr2	60904914	60905914	+	913.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-23976.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77504349-2	chr10	77503849	77504849	+	913.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133998, intron 2 of 5)	intron (NM_133998, intron 2 of 5)	11464.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120406538-4	chr4	120406038	120407038	+	913.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013883, intron 1 of 16)	intron (NM_013883, intron 1 of 16)	1257.0	NM_013883	29871.0	Mm.427014	NM_013883	ENSMUSG00000000085	Scmh1	AI315320|AI851618|Scml1|Scml3	sex comb on midleg homolog 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-64945002-4	chr8	64944518	64945518	+	913.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2167.0	NM_001163747	73067.0	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116412579-4	chr11	116412083	116413083	+	913.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027258, intron 1 of 18)	CpG	449.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64717644-4	chr1	64717126	64718126	+	913.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097644, intron 7 of 9)	intron (NM_001097644, intron 7 of 9)	20124.0	NM_001042659	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36253030-4	chr1	36252535	36253535	+	913.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8733.0	NM_198899	320011.0	Mm.261022	NM_198899	ENSMUSG00000037470	Uggt1	0910001L17Rik|A930007H10Rik|AA589501|AI414429|AI448372|C820010P03Rik|GT|UGT1|Ugcgl1	UDP-glucose glycoprotein glucosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26917765-4	chr8	26917270	26918270	+	913.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-59566.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120536326-6	chr8	120535869	120536869	+	913.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_151732)	TTS (NR_151732)	512.0	NM_001145897	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-33017009-4	chr12	33016492	33017492	+	913.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER58B|DNA|hAT-Charlie	62806.0	NM_198710	19027.0	Mm.246304	NM_013635	ENSMUSG00000020570	Sypl	AI314763|AI604763|D12Ertd446e|PanI|Pphn|Sypl1	synaptophysin-like protein	protein-coding	3.5	14.5	6.5	0.0	15.0	0.5
Merged-chr19-14243830-3	chr19	14243343	14244343	+	913.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	192107.0	NR_152176	667433.0	Mm.128913	NR_152176		Gm8630	EG667433	predicted gene 8630	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53355134-2	chr4	53354634	53355634	+	913.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84902.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-109959324-4	chr2	109958846	109959846	+	913.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172671, intron 1 of 17)	intron (NM_172671, intron 1 of 17)	41699.0	NM_172671	107515.0	Mm.277351	NM_172671	ENSMUSG00000050199	Lgr4	9130225G07|A330106J01Rik|A930009A08Rik|Gpr48	leucine-rich repeat-containing G protein-coupled receptor 4	protein-coding	10.5	18.0	17.5	5.0	14.5	24.0
Merged-chr9-44169323-4	chr9	44168813	44169813	+	913.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 3 of 15)	intron (NM_007619, intron 3 of 15)	34655.0	NM_001359530	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-35096260-4	chr4	35095782	35096782	+	913.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-55773.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-31850549-4	chr11	31850058	31851058	+	913.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-20382.0	NM_001290676	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	0.0	1.5	2.5	2.5	6.5	5.5
Merged-chr16-10979591-4	chr16	10979101	10980101	+	913.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	MLT-int|LTR|ERVL-MaLR	13520.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49271994-4	chr13	49271509	49272509	+	913.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 14 of 17)	intron (NM_015759, intron 14 of 17)	-23303.0	NM_028340	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114689445-4	chr5	114688972	114689972	+	913.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019821, intron 1 of 4)	RSINE1|SINE|B4	1463.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	14.0	126.0	47.0	12.0	45.5	28.0
Merged-chr8-108615983-4	chr8	108615472	108616472	+	913.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-31295.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126862450-4	chr7	126861976	126862976	+	913.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172746, exon 1 of 7)	exon (NM_172746, exon 1 of 7)	504.0	NM_172746	233876.0	Mm.363427	NM_172746	ENSMUSG00000042606	Hirip3	B130036O03|C86302	HIRA interacting protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-17836937-4	chr13	17836450	17837450	+	913.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31853.0	NM_027118	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143474927-4	chr7	143474401	143475401	+	913.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042760)	promoter-TSS (NM_001042760)	-215.0	NM_001042760	18400.0	Mm.271740	NM_008767	ENSMUSG00000000154	Slc22a18	AW260131|BWR1A|BWSCR1A|HET|ITM|Impt1|Orctl2|Slc22a1l|TSSC5|p45-BWR1A	solute carrier family 22 (organic cation transporter), member 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127195459-6	chr10	127194996	127195996	+	913.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045715, exon 1 of 4)	non-coding (NR_045715, exon 1 of 4)	213.0	NM_030714	80904.0	Mm.271724	NM_030714	ENSMUSG00000040415	Dtx3	Deltex3|mg310	deltex 3, E3 ubiquitin ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21236577-4	chr11	21236072	21237072	+	913.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12D|LTR|ERVK	-2460.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	4.0	5.5	5.5	5.5	9.0	11.0
Merged-chr6-38507264-4	chr6	38506754	38507754	+	913.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106130)	promoter-TSS (NR_106130)	-71.0	NR_106130	102466843.0		NR_106130	ENSMUSG00000098285	Mir7670	Gm27707|mmu-mir-7670	microRNA 7670	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24715242-4	chr7	24714753	24715753	+	913.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_199150)	TTS (NM_199150)	5994.0	NM_199150	232972.0	Mm.293074	NM_199150	ENSMUSG00000045587	BC049730	Lypd10	cDNA sequence BC049730	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-56875937-6	chr14	56875416	56876416	+	913.0277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6C|LTR|ERVK	-10687.0	NM_177627	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144696734-4	chr3	144696245	144697245	+	913.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 9 of 10)	intron (NM_001282037, intron 9 of 10)	23590.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-133783246-2	chr7	133782746	133783746	+	913.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286031)	promoter-TSS (NM_001286031)	-461.0	NM_001286031	101437.0	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32|muDDX32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80949973-2	chr15	80949473	80950473	+	913.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009634, intron 1 of 12)	B3|SINE|B2	1483.0	NM_009634	11564.0	Mm.38151	NM_009634	ENSMUSG00000022407	Adsl	Adl|Asl	adenylosuccinate lyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80301003-4	chr11	80300559	80301559	+	913.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_139228, exon 1 of 9)	5' UTR (NM_139228, exon 1 of 9)	147.0	NM_139228	246104.0	Mm.194148	NM_139228	ENSMUSG00000017692	Rhbdl3	AI847581|Rhbdl4|Rhomr1|Vrho	rhomboid like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86583075-2	chr6	86582575	86583575	+	913.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45099.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70093160-2	chr14	70092660	70093660	+	913.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6933.0	NM_021328	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46554835-2	chr17	46554335	46555335	+	913.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105942)	promoter-TSS (NR_105942)	-946.0	NR_105942	102466778.0		NR_105942	ENSMUSG00000106514	Mir6976	mmu-mir-6976	microRNA 6976	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25109478-3	chr8	25108998	25109998	+	913.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_155282)	TTS (NR_155282)	7319.0	NR_155282	74744.0	Mm.117802	NR_155282		5830408C22Rik	2700026D01Rik	RIKEN cDNA 5830408C22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139168576-2	chr4	139168074	139169074	+	913.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	12081.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	49.5	106.0	58.0	28.5	34.0	35.5
Merged-chr9-21720580-2	chr9	21720080	21721080	+	913.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-2996.0	NM_001252658	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-33904964-2	chr1	33904464	33905464	+	913.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 1 of 6)	intron (NM_177235, intron 1 of 6)	2657.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85064525-2	chr8	85064025	85065025	+	913.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026791, intron 4 of 9)	intron (NM_026791, intron 4 of 9)	2439.0	NR_106038	102465648.0		NR_106038	ENSMUSG00000099076	Mir7070	Gm27565|mmu-mir-7070	microRNA 7070	ncRNA	7.5	2.0	1.0	0.0	6.5	0.5
Merged-chr7-35740306-1	chr7	35739806	35740806	+	913.0	f1_balb.idr	intron (NM_178704, intron 3 of 18)	RMER12C|LTR|ERVK	14148.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	2.0	4.0	2.0	17.0	8.0	8.0
Merged-chr18-84923117-2	chr18	84922617	84923617	+	913.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11888.0	NM_015798	50764.0	Mm.28369	NM_015798	ENSMUSG00000034391	Fbxo15	AU019763|Fbx15|ecat3	F-box protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-66896105-2	chr1	66895605	66896605	+	913.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	-32796.0	NM_007381	11363.0	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126787787-1	chr7	126787287	126788287	+	913.0	f1_balb.idr	intron (NM_019674, intron 5 of 8)	intron (NM_019674, intron 5 of 8)	4577.0	NM_001360464	56420.0	Mm.41998	NM_019674	ENSMUSG00000030697	Ppp4c	1110002D08Rik|AU016079|PP-X|PP4C|Ppx|pp4	protein phosphatase 4, catalytic subunit	protein-coding	0.5	0.0	0.5	0.0	1.0	1.0
Merged-chr3-141301168-2	chr3	141300668	141301668	+	913.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-88813.0	NM_008811	18598.0	Mm.4223	NM_008811	ENSMUSG00000047674	Pdha2	Pdhal	pyruvate dehydrogenase E1 alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33130920-4	chr16	33130417	33131417	+	913.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	25556.0	NR_035469	100316698.0		NR_035469	ENSMUSG00000088860	Mir1947	mir-1947|mmu-mir-1947	microRNA 1947	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106258010-2	chr9	106257510	106258510	+	913.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	MLT2C1|LTR|ERVL	-10056.0	NM_020559	11655.0	Mm.290578	NM_020559	ENSMUSG00000032786	Alas1	ALAS|ALAS-N|Alas-1|Alas-h	aminolevulinic acid synthase 1	protein-coding	0.0	2.5	6.0	0.0	0.0	5.0
Merged-chr6-39119320-2	chr6	39118820	39119820	+	913.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172893)	promoter-TSS (NM_172893)	847.0	NR_045813	75379.0	Mm.348014	NR_045813	ENSMUSG00000073144	4930599N23Rik	-	RIKEN cDNA 4930599N23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-40968233-2	chr13	40967733	40968733	+	913.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155347, intron 1 of 4)	intron (NR_155347, intron 1 of 4)	-32777.0	NM_026550	68083.0	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38471906-2	chr15	38471406	38472406	+	913.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18641.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43975069-4	chr4	43974570	43975570	+	913.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027450, intron 4 of 4)	intron (NM_027450, intron 4 of 4)	-8434.0	NM_001002787	442829.0	Mm.348215	NM_001002787	ENSMUSG00000070999	Ccin	4933417A14Rik	calicin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-22304735-1	chr10	22304235	22305235	+	913.0	f1_balb.idr	intron (NM_009018, intron 6 of 6)	L1M3|LINE|L1	-1985.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0.0	1.0	1.5	5.5	5.5	6.0
Merged-chr16-30589023-2	chr16	30588523	30589523	+	913.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1434.0	NM_178069	224092.0	Mm.567	NM_178069	ENSMUSG00000022538	Lsg1	5830465I20|AA409273|D16Bwg1547e	large 60S subunit nuclear export GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27010741-2	chr2	27010241	27011241	+	913.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243240, intron 1 of 2)	intron (NM_001243240, intron 1 of 2)	815.0	NM_001243239	381356.0	Mm.150270	NM_029862	ENSMUSG00000015488	Cacfd1	5930434B04Rik|mFwe	calcium channel flower domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81853098-2	chr15	81852598	81853598	+	913.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020507, intron 1 of 1)	intron (NM_020507, intron 1 of 1)	5228.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	0.0	0.0	3.0	0.0	0.0	3.0
Merged-chr16-26580531-2	chr16	26580031	26581031	+	913.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-1174.0	NM_001159318	16180.0	Mm.253424	NM_008364	ENSMUSG00000022514	Il1rap	6430709H04Rik|AI255955|AV239853|IL-1RAcP	interleukin 1 receptor accessory protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-3929748-3	chr16	3929237	3930237	+	913.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029738, intron 8 of 11)	intron (NM_029738, intron 8 of 11)	20728.0	NM_029738	76779.0	Mm.458921	NM_029738	ENSMUSG00000014232	Cluap1	2310030D15Rik|2610111M03Rik	clusterin associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103048889-3	chr14	103048380	103049380	+	913.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008392, intron 1 of 4)	intron (NM_008392, intron 1 of 4)	1868.0	NM_008392	16365.0	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102900944-3	chr11	102900441	102901441	+	913.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3741.0	NM_010277	14580.0	Mm.1239	NM_010277	ENSMUSG00000020932	Gfap	AI836096	glial fibrillary acidic protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105518075-2	chr5	105517575	105518575	+	913.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1396.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	7.5	5.5	2.5	2.0	9.5	3.5
Merged-chr7-49753269-3	chr7	49752791	49753791	+	913.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5815.0	NM_001146053	53415.0	Mm.20801	NM_016865	ENSMUSG00000039745	Htatip2	AW111545|Cc3|Tip30	HIV-1 Tat interactive protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114915720-2	chr11	114915220	114916220	+	913.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18666.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3052578-2	chr4	3052078	3053078	+	913.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119505.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-72851032-2	chr2	72850532	72851532	+	913.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37315.0	NR_102349	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122219806-2	chr5	122219306	122220306	+	913.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359454, intron 3 of 7)	intron (NM_001359454, intron 3 of 7)	9519.0	NM_028752	74096.0	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129188974-4	chr4	129188456	129189456	+	913.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134151)	promoter-TSS (NM_134151)	586.0	NM_029036	74648.0	Mm.172064	NM_029036	ENSMUSG00000040928	S100pbp	4930429A08Rik|AI851343|S100pbpr	S100P binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-137679493-2	chr6	137678993	137679993	+	913.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30208.0	NM_007945	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129589798-2	chr2	129589298	129590298	+	913.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3041.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.0	21.0	5.0	6.0	9.5	16.0
Merged-chr3-146216775-2	chr3	146216275	146217275	+	913.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4186.0	NM_022983	65086.0	Mm.155520	NM_022983	ENSMUSG00000036832	Lpar3	Edg7|lpA3	lysophosphatidic acid receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34030309-2	chr17	34029833	34030833	+	913.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077709, intron 4 of 7)	intron (NM_001077709, intron 4 of 7)	1357.0	NM_001077709	14977.0	Mm.18556	NM_008202	ENSMUSG00000024327	Slc39a7	AA408174|AI117660|AL024048|H-2Ke4|H2-Ke4|Ke-4|Ke4|Ring5|Zip7	solute carrier family 39 (zinc transporter), member 7	protein-coding	12.5	15.5	22.5	0.0	20.5	18.0
Merged-chr7-48314608-2	chr7	48314108	48315108	+	913.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-73918.0	NM_207539	404240.0	Mm.357942	NM_207539	ENSMUSG00000050870	Mrgprb8	MrgB8	MAS-related GPR, member B8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27352214-2	chr14	27351714	27352714	+	913.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	-9175.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	9.5	33.5	35.5	9.5	25.0	26.0
Merged-chr1-85250563-1	chr1	85250063	85251063	+	913.0	f1_balb.idr	intron (NM_175219, intron 6 of 7)	intron (NM_175219, intron 6 of 7)	20003.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3360100-4	chr5	3359596	3360596	+	912.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	MTE2a|LTR|ERVL-MaLR	16203.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11053252-4	chr19	11052781	11053781	+	912.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2715.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11517571-4	chr19	11517066	11518066	+	912.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027209)	promoter-TSS (NM_027209)	-993.0	NM_027209	69774.0	Mm.436639	NM_027209	ENSMUSG00000024677	Ms4a6b	1810027D10Rik	membrane-spanning 4-domains, subfamily A, member 6B	protein-coding	13.0	67.5	19.5	8.0	41.5	21.0
Merged-chr17-25868555-8	chr17	25868018	25869018	+	912.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026633, exon 2 of 5)	exon (NM_026633, exon 2 of 5)	220.0	NM_026633	68241.0	Mm.328870	NM_026633	ENSMUSG00000025732	Mcrip2	9530058B02Rik|Fam195a	MAPK regulated corepressor interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13716519-4	chr9	13716027	13717027	+	912.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32654.0	NR_024025	77116.0	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25479968-4	chr14	25479469	25480469	+	912.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	20784.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	1.0	6.0	5.0	1.5	6.0	4.5
Merged-chr5-92470919-3	chr5	92470412	92471412	+	912.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 2 of 11)	B4A|SINE|B4	12355.0	NR_105843	102466159.0		NR_105843	ENSMUSG00000099160	Mir6415	Gm27714|mmu-mir-6415	microRNA 6415	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85844785-3	chr11	85844290	85845290	+	912.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12175.0	NM_009324	21385.0	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64299079-4	chr1	64298558	64299558	+	912.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-177669.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156420867-6	chr2	156420417	156421417	+	912.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013510)	promoter-TSS (NM_013510)	8.0	NM_001291123	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	16.0	31.5	19.0	14.5	15.0	12.5
Merged-chr1-162589687-4	chr1	162589202	162590202	+	912.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356527, intron 6 of 7)	intron (NM_001356527, intron 6 of 7)	18874.0	NM_016796	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	11.5	14.0	14.5	19.0	19.0	21.5
Merged-chr3-10297359-4	chr3	10296949	10297949	+	912.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029310, intron 1 of 5)	intron (NM_029310, intron 1 of 5)	3734.0	NM_001357159	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-16198927-4	chr4	16198423	16199423	+	912.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045765, intron 2 of 6)	intron (NR_045765, intron 2 of 6)	34813.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-79232255-4	chr7	79231769	79232769	+	912.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3b|LINE|CR1	-40997.0	NM_018811	54608.0	Mm.365490	NM_018811	ENSMUSG00000039202	Abhd2	2210009N18Rik|LABH2|Labh-2	abhydrolase domain containing 2	protein-coding	0.0	0.0	0.5	10.5	2.0	1.0
Merged-chr19-29563672-3	chr19	29563201	29564201	+	912.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081319, intron 4 of 25)	intron (NM_001081319, intron 4 of 25)	41419.0	NM_001081319	226089.0	Mm.353838	NM_177641	ENSMUSG00000038658	Ric1	C030046E11Rik|C130057E09Rik|Kiaa1432	RAB6A GEF complex partner 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-183803549-4	chr1	183803053	183804053	+	912.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151520, intron 2 of 2)	intron (NR_151520, intron 2 of 2)	54576.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	26.5	55.0	36.5	27.0	18.5	26.5
Merged-chr6-117271765-4	chr6	117271227	117272227	+	912.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103192.0	NM_021704	20315.0	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74992840-3	chr15	74992299	74993299	+	912.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5232.0	NM_001271417	110454.0	Mm.425949	NM_010738	ENSMUSG00000075602	Ly6a	Ly-6A.2|Ly-6A/E|Ly-6E.1|Sca-1|Sca1|TAP	lymphocyte antigen 6 complex, locus A	protein-coding	2.0	4.0	14.0	3.5	1.5	5.0
Merged-chr16-33191072-3	chr16	33190464	33191464	+	912.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176840, intron 1 of 12)	intron (NM_176840, intron 1 of 12)	5893.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-73814754-3	chr18	73814206	73815206	+	912.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145494, intron 1 of 15)	intron (NM_145494, intron 1 of 15)	686.0	NM_145494	107029.0	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	7.5	19.0	5.0	11.0	5.5	8.5
Merged-chr10-118867386-3	chr10	118866867	118867867	+	912.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014390, intron 2 of 2)	intron (NM_001014390, intron 2 of 2)	1536.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	34.5	106.0	77.0	44.0	108.0	79.5
Merged-chr8-75031571-4	chr8	75031058	75032058	+	912.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001316753, exon 12 of 12)	3' UTR (NM_001316753, exon 12 of 12)	-2128.0	NM_001136259	21968.0	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88099037-4	chr8	88098528	88099528	+	912.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151771, intron 2 of 7)	intron (NR_151771, intron 2 of 7)	19579.0	NR_151771	100040328.0	Mm.56398	NR_151771		Gm2716	4933416k23	predicted gene 2716	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122303551-4	chr5	122303030	122304030	+	912.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177242, intron 1 of 5)	intron (NM_177242, intron 1 of 5)	19132.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	4.5	0.0	5.0	4.0	0.0	4.0
Merged-chr18-39138019-4	chr18	39137523	39138523	+	912.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 10 of 21)	intron (NM_001361073, intron 10 of 21)	144878.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-83855850-4	chr3	83855358	83856358	+	912.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20A3_MM|LTR|ERVK	-14250.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0.0	1.5	0.5	0.0	1.5	0.5
Merged-chr7-143625275-4	chr7	143624770	143625770	+	912.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175649, intron 1 of 7)	RMER4A|LTR|ERVK	2575.0	NM_175649	244237.0	Mm.247498	NM_175649	ENSMUSG00000045362	Tnfrsf26	Tnfrh3|Tnfrsf24	tumor necrosis factor receptor superfamily, member 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73610243-4	chr12	73609740	73610740	+	912.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	25444.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	15.5	43.0	25.0	11.0	82.0	50.5
Merged-chr17-36205834-7	chr17	36205447	36206447	+	912.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-15796.0	NM_008208	15043.0	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142818928-4	chr5	142818416	142819416	+	912.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1529.0	NM_001122730	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144617936-4	chr3	144617432	144618432	+	912.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47505.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54993804-4	chr12	54993319	54994319	+	912.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7483.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	7.5	15.0	1.5	2.0	17.5	10.5
Merged-chr4-53198526-4	chr4	53198025	53199025	+	912.841675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-38630.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	2.5	0.0	0.0	5.5	4.0
Merged-chr3-60601801-2	chr3	60601301	60602301	+	912.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 2 of 7)	intron (NM_001253711, intron 2 of 7)	100622.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81168997-4	chr10	81168485	81169485	+	912.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1265.0	NM_021501	59004.0	Mm.34428	NM_021501	ENSMUSG00000004934	Pias4	PIASY|Pias-gamma|Piasg	protein inhibitor of activated STAT 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28736780-2	chr17	28736280	28737280	+	912.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168508, intron 8 of 11)	intron (NM_001168508, intron 8 of 11)	-32537.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33939866-2	chr17	33939366	33940366	+	912.8333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020603)	promoter-TSS (NM_020603)	464.0	NM_001185182	14976.0	Mm.2948	NM_010385	ENSMUSG00000024309	Pfdn6	H-2Ke2|H2-Ke2|Ke-2	prefoldin subunit 6	protein-coding	27.0	98.5	53.5	34.0	88.5	51.5
Merged-chr15-98617407-2	chr15	98616907	98617907	+	912.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9774.0	NM_007405	11512.0	Mm.157091	NM_007405	ENSMUSG00000022994	Adcy6	AC6|mKIAA0422	adenylate cyclase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112137049-4	chr13	112136553	112137553	+	912.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-151398.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110478798-4	chr9	110478294	110479294	+	912.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163569, intron 1 of 20)	intron (NM_001163569, intron 1 of 20)	1800.0	NM_001163569	16578.0	Mm.42170	NM_010628	ENSMUSG00000032489	Kif9	-	kinesin family member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73846837-3	chr12	73846321	73847321	+	912.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-54503.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57250040-1	chr17	57249540	57250540	+	912.8333130000001	f0_balb.idr	intron (NM_001242390, intron 1 of 14)	intron (NM_001242390, intron 1 of 14)	589.0	NM_001242389	106628.0	Mm.37368	NM_134125	ENSMUSG00000019487	Trip10	AI646975|Cip4	thyroid hormone receptor interactor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36704900-4	chr16	36704412	36705412	+	912.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 1 of 7)	intron (NM_001285788, intron 1 of 7)	10934.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45081620-4	chr2	45081121	45082121	+	912.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	28656.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88230045-2	chr1	88229545	88230545	+	912.7999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 3 of 41)	intron (NM_001281466, intron 3 of 41)	3025.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50397475-4	chr16	50397002	50398002	+	912.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 2 of 16)	intron (NM_027444, intron 2 of 16)	34887.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	6.5	18.5	10.0	7.5	8.5	4.0
Merged-chr5-43737176-3	chr5	43736683	43737683	+	912.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359906, intron 35 of 37)	intron (NM_001359906, intron 35 of 37)	44966.0	NM_001159963	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	16.0	7.0	11.0	98.5	78.0	59.5
Merged-chr6-16978135-6	chr6	16977590	16978590	+	912.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79649.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57550932-2	chr16	57550495	57551495	+	912.7666630000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	1753.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	47.5	61.0	26.0	22.5	43.0	43.0
Merged-chr3-131300090-4	chr3	131299600	131300600	+	912.758301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027816, intron 1 of 4)	L1M5|LINE|L1	3127.0	NM_027816	71519.0	Mm.473179	NM_027816	ENSMUSG00000027983	Cyp2u1	8430436A10Rik	cytochrome P450, family 2, subfamily u, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27382107-2	chr14	27381607	27382607	+	912.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 4 of 10)	MER21B|LTR|ERVL	20718.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	1.0	7.0	14.5	5.0	12.0	12.0
Merged-chr6-47793463-2	chr6	47792963	47793963	+	912.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	10189.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	2.5	9.5	5.0	2.5	7.5	8.5
Merged-chr1-135281555-2	chr1	135281055	135282055	+	912.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159624, intron 1 of 9)	intron (NM_001159624, intron 1 of 9)	2529.0	NM_145417	215615.0	Mm.291048	NM_145417	ENSMUSG00000041926	Rnpep	-	arginyl aminopeptidase (aminopeptidase B)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34747669-2	chr17	34747163	34748163	+	912.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-3766.0	NM_009780	12268.0	Mm.477109	NM_009780	ENSMUSG00000073418	C4b	C4|Ss	complement component 4B (Chido blood group)	protein-coding	5.5	16.5	14.0	6.0	20.5	10.5
Merged-chr1-191305689-2	chr1	191305144	191306144	+	912.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12474.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	1.5	0.5	0.0	0.0	1.5	0.5
Merged-chr1-134560534-6	chr1	134559985	134560985	+	912.744446	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_152895, exon 1 of 27)	exon (NM_152895, exon 1 of 27)	307.0	NM_152895	75605.0	Mm.28995	NM_152895	ENSMUSG00000042207	Kdm5b	2010009J12Rik|2210016I17Rik|AW556288|D1Ertd202e|Jarid1b|PLU-1|PUT1|Plu1|RBBP2H1A|Rb-Bp2|mKIAA4034	lysine (K)-specific demethylase 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45243088-4	chr9	45242599	45243599	+	912.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 3 of 4)	intron (NM_001198971, intron 3 of 4)	23608.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37333546-4	chr13	37333002	37334002	+	912.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11843.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	6.0	12.5	7.5	1.5	6.5	3.5
Merged-chr5-43232052-3	chr5	43231554	43232554	+	912.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 1 of 7)	intron (NR_028417, intron 1 of 7)	-1409.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100599021-4	chr15	100598513	100599513	+	912.712524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304965, intron 1 of 10)	intron (NM_001304965, intron 1 of 10)	971.0	NM_001304965	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	25.0	95.5	81.5	24.0	96.5	62.5
Merged-chr10-51498517-4	chr10	51498011	51499011	+	912.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	7613.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54577439-4	chr12	54576932	54577932	+	912.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6BA|LTR|ERVK	68580.0	NR_035439	100316682.0		NR_035439	ENSMUSG00000106344	Mir1892	Mirn1892|mir-1892|mmu-mir-1892	microRNA 1892	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-63906716-4	chr5	63906201	63907201	+	912.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62196.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	0.0	2.5	1.5	0.0	0.0	2.5
Merged-chr12-85490146-4	chr12	85489647	85490647	+	912.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16257.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37523882-3	chr19	37523376	37524376	+	912.7000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26542.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132107790-4	chr2	132107289	132108289	+	912.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	37319.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132079764-4	chr4	132079235	132080235	+	912.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4422.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20693679-3	chr16	20693182	20694182	+	912.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001304432)	TTS (NM_001304432)	-1375.0	NM_133778	78408.0	Mm.196512	NM_133778	ENSMUSG00000050821	Fam131a	2900046G09Rik	family with sequence similarity 131, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6305569-2	chr19	6305069	6306069	+	912.6666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033342)	promoter-TSS (NM_001033342)	-888.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8738938-3	chr3	8738472	8739472	+	912.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71934.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31107888-3	chr3	31107391	31108391	+	912.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039090, intron 2 of 6)	intron (NM_001039090, intron 2 of 6)	12833.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52941114-3	chr2	52940631	52941631	+	912.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	83263.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19272921-3	chr7	19272408	19273408	+	912.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1054.0	NM_001282022	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59590044-4	chr10	59589551	59590551	+	912.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033259, intron 1 of 7)	MLT1N2|LTR|ERVL-MaLR	26641.0	NM_001033259	215999.0	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92374332-3	chr5	92373845	92374845	+	912.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-11049.0	NR_038116	56066.0	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	59.5	101.5	72.5	49.0	101.5	63.5
Merged-chr6-30114308-1	chr6	30113808	30114808	+	912.6666869999999	f0_balb.idr	intron (NM_001361695, intron 6 of 11)	intron (NM_001361695, intron 6 of 11)	27143.0	NM_001361693	18181.0	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-31804497-1	chr18	31803997	31804997	+	912.6666869999999	f0_balb.idr	intron (NM_028866, intron 1 of 21)	CpG	440.0	NM_001170966	74320.0	Mm.277705	NM_028866	ENSMUSG00000024400	Wdr33	1110001N06Rik|2310011G05Rik|2810021O11Rik|8430413N20Rik|WDC146	WD repeat domain 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-33263212-4	chr6	33262704	33263704	+	912.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347089, intron 1 of 9)	B1F|SINE|Alu	14076.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58214872-4	chr13	58214386	58215386	+	912.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026842, intron 1 of 10)	intron (NM_026842, intron 1 of 10)	767.0	NM_152234	56085.0	Mm.182053	NM_026842	ENSMUSG00000005312	Ubqln1	1110046H03Rik|1810030E05Rik|AU019746|C77538|D13Ertd372e|Da41|Dsk2|Plic-1|Plic1|Xdrp1	ubiquilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12015771-2	chr19	12015271	12016271	+	912.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20969.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36531784-4	chr16	36531287	36532287	+	912.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013803, intron 1 of 6)	intron (NM_013803, intron 1 of 6)	30347.0	NM_013803	12374.0	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115422181-4	chr11	115421719	115422719	+	912.625	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183285, intron 2 of 5)	intron (NM_183285, intron 2 of 5)	2093.0	NM_183285	70382.0	Mm.276299	NM_183285	ENSMUSG00000016940	Kctd2	2310012I15Rik	potassium channel tetramerisation domain containing 2	protein-coding	3.0	4.5	15.0	12.0	14.5	21.5
Merged-chr7-107620295-4	chr7	107619760	107620760	+	912.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163557, intron 1 of 25)	MLT1-int|LTR|ERVL-MaLR	13416.0	NM_001163557	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86125976-4	chr17	86125482	86126482	+	912.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030133, intron 7 of 20)	intron (NM_030133, intron 7 of 20)	19193.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99630311-4	chr5	99629786	99630786	+	912.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	98774.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130792830-14	chr4	130792276	130793276	+	912.619019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011520, exon 1 of 5)	exon (NM_011520, exon 1 of 5)	239.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-29527302-4	chr16	29526788	29527788	+	912.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164613, intron 2 of 21)	intron (NM_001164613, intron 2 of 21)	14195.0	NM_172613	224079.0	Mm.54954	NM_172613	ENSMUSG00000038094	Atp13a4	4631413J11Rik|4832416L12|9330174J19Rik	ATPase type 13A4	protein-coding	0.0	10.0	1.5	0.5	10.5	2.5
Merged-chr7-92975501-4	chr7	92974994	92975994	+	912.6166380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100241.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133204615-3	chr4	133204077	133205077	+	912.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7959.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	2.0	13.0	22.5	8.5	26.5	30.0
Merged-chr2-38368855-3	chr2	38368330	38369330	+	912.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290646, intron 4 of 4)	intron (NM_001290646, intron 4 of 4)	17522.0	NM_010710	16870.0	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-43656688-4	chr11	43656194	43657194	+	912.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25304.0	NM_027557	70802.0	Mm.397449	NM_027557	ENSMUSG00000044950	Pwwp2a	4631424J17Rik|AI891583|AU024105|D930040F23Rik	PWWP domain containing 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114922675-5	chr6	114922303	114923303	+	912.599976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177683)	promoter-TSS (NM_177683)	-982.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8607343-4	chr11	8606842	8607842	+	912.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	57193.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105109790-4	chr4	105109237	105110237	+	912.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178143, exon 1 of 9)	exon (NM_178143, exon 1 of 9)	161.0	NM_178143	108079.0	Mm.48638	NM_178143	ENSMUSG00000028518	Prkaa2	2310008I11Rik|A830082D05|AMPKalpha2	protein kinase, AMP-activated, alpha 2 catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	7.5
Merged-chr4-3772803-2	chr4	3772303	3773303	+	912.5833130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	57839.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	3.0	12.5	10.5	7.0	14.5	14.5
Merged-chr18-78138455-4	chr18	78137950	78138950	+	912.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171011, intron 1 of 8)	intron (NM_001171011, intron 1 of 8)	3669.0	NM_001171011	108052.0	Mm.33832	NM_028122	ENSMUSG00000059336	Slc14a1	2610507K20Rik|3021401A05Rik|UT-B|Utb1	solute carrier family 14 (urea transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170608842-3	chr1	170608362	170609362	+	912.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19013.0	NM_001109985	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25587797-4	chr14	25587304	25588304	+	912.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033492, exon 1 of 1)	non-coding (NR_033492, exon 1 of 1)	1000.0	NR_033492	77592.0	Mm.444871	NM_175264		4931406H21Rik	-	RIKEN cDNA 4931406H21 gene	ncRNA	4.0	9.5	10.5	2.0	5.5	15.5
Merged-chr11-72206503-6	chr11	72205869	72206869	+	912.577759	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155065, intron 1 of 19)	intron (NR_155065, intron 1 of 19)	1113.0	NR_155065	74477.0	Mm.289697	NM_028963	ENSMUSG00000020807	4933427D14Rik	C85113|Kiaa0753|MNR	RIKEN cDNA 4933427D14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-101595399-4	chr3	101594919	101595919	+	912.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	9288.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-66394375-4	chr8	66393871	66394871	+	912.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 5 of 7)	intron (NM_175188, intron 5 of 7)	8070.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75469245-3	chr18	75468758	75469758	+	912.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 10 of 11)	ORR1F|LTR|ERVL-MaLR	-45387.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	7.0	2.5	14.5	0.0	10.0	7.5
Merged-chr15-33265869-3	chr15	33265362	33266362	+	912.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176073, intron 3 of 7)	L2c|LINE|L2	140077.0	NR_033608	73486.0	Mm.483393	NM_028551	ENSMUSG00000058101	1700084J12Rik	-	ribosomal protein L7-like 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131198493-4	chr1	131197988	131198988	+	912.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018750, intron 2 of 5)	intron (NM_018750, intron 2 of 5)	1697.0	NM_001311094	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-52232748-3	chr10	52232266	52233266	+	912.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347444)	promoter-TSS (NM_001347444)	-853.0	NM_001347444	66686.0	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56023437-5	chr17	56022895	56023895	+	912.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013664, intron 1 of 9)	intron (NM_013664, intron 1 of 9)	13242.0	NM_013664	20405.0	Mm.1773	NM_013664	ENSMUSG00000003200	Sh3gl1	C77078|EEN|SH3P8|Sh3d2b	SH3-domain GRB2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105268530-4	chr4	105268022	105269022	+	912.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111175.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.0	0.0	1.5	0.0	0.0	1.5
Merged-chr16-33820960-4	chr16	33820452	33821452	+	912.5125119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8713.0	NM_010580	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79396948-4	chr15	79396477	79397477	+	912.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172608, intron 1 of 8)	intron (NM_172608, intron 1 of 8)	5942.0	NM_001253817	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	13.5	12.5	0.5	5.0	20.0	7.0
Merged-chr3-52500718-2	chr3	52500218	52501218	+	912.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16246.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110436862-2	chr11	110436362	110437362	+	912.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	37760.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-10287038-2	chr3	10286538	10287538	+	912.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029310, intron 1 of 5)	RLTR20A3_MM|LTR|ERVK	14145.0	NM_001357159	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78615720-3	chr9	78615246	78616246	+	912.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_153098, exon 1 of 33)	5' UTR (NM_153098, exon 1 of 33)	200.0	NM_153098	235505.0	Mm.32955	NM_153098	ENSMUSG00000046186	Cd109	9930012E15Rik|AI480638|GARP	CD109 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107549871-2	chr9	107549379	107550379	+	912.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_053253, exon 8 of 12)	exon (NM_053253, exon 8 of 12)	-1676.0	NM_001243748	56289.0	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	1.0	0.0	1.0	0.0	5.0	3.0
Merged-chr10-128272071-2	chr10	128271513	128272513	+	912.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019963, intron 1 of 23)	intron (NM_019963, intron 1 of 23)	1515.0	NM_019963	20847.0	Mm.293120	NM_019963	ENSMUSG00000040033	Stat2	1600010G07Rik|AW496480	signal transducer and activator of transcription 2	protein-coding	12.0	15.0	12.5	6.0	25.0	11.5
Merged-chr3-103025500-2	chr3	103025000	103026000	+	912.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310693, intron 1 of 17)	intron (NM_001310693, intron 1 of 17)	4954.0	NM_144901	229663.0	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-186117960-2	chr1	186117460	186118460	+	912.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146106)	promoter-TSS (NM_146106)	-650.0	NM_146106	226791.0	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	2.5	13.0	9.5	11.0	5.5	6.0
Merged-chr5-149182914-2	chr5	149182414	149183414	+	912.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015478)	promoter-TSS (NR_015478)	-878.0	NR_015478	433966.0	Mm.207047	NR_015478	ENSMUSG00000097191	5730422E09Rik	-	RIKEN cDNA 5730422E09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35725698-4	chr17	35725177	35726177	+	912.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21078.0	NM_007584	12305.0	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	0.0	2.5	0.0	0.5	3.0	2.0
Merged-chr5-127607726-4	chr5	127607213	127608213	+	912.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133895, intron 2 of 7)	intron (NM_133895, intron 2 of 7)	9679.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84784064-4	chr18	84783554	84784554	+	912.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39987.0	NR_155706	102641800.0		NR_155706		Gm38576	-	predicted gene, 38576	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130842552-4	chr5	130842034	130843034	+	912.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	393742.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31790972-2	chr14	31790472	31791472	+	912.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024604, intron 1 of 27)	intron (NM_001024604, intron 1 of 27)	39443.0	NM_001024604	105522.0	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114647805-3	chr5	114647307	114648307	+	912.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022017, intron 1 of 15)	intron (NM_022017, intron 1 of 15)	10614.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	8.0	2.0	5.0	22.5	13.5	9.5
Merged-chr7-110878266-2	chr7	110877766	110878766	+	912.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_194464, intron 18 of 20)	intron (NM_194464, intron 18 of 20)	-15313.0	NM_053247	114332.0	Mm.396078	NM_053247	ENSMUSG00000030787	Lyve1	1200012G08Rik|Crsbp-1|Lyve-1|Xlkd1	lymphatic vessel endothelial hyaluronan receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59207348-3	chr2	59206887	59207887	+	912.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	46537.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15652851-3	chr17	15652377	15653377	+	912.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12H|LTR|ERVK	21089.0	NR_045431	71008.0	Mm.399492	NR_045431		4933401D09Rik	-	RIKEN cDNA 4933401D09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115685103-2	chr11	115684603	115685603	+	912.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	14431.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37604162-3	chr19	37603661	37604661	+	912.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175353, intron 17 of 21)	intron (NM_175353, intron 17 of 21)	53743.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	3.5	9.5	10.5	0.0	3.0	2.0
Merged-chr15-76195314-2	chr15	76194814	76195814	+	912.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163542, intron 1 of 33)	intron (NM_001163542, intron 1 of 33)	396.0	NM_201394	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116800264-2	chr4	116799764	116800764	+	912.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146151, intron 5 of 10)	MT2B1|LTR|ERVL	7295.0	NM_026654	68276.0	Mm.30534	NM_026654	ENSMUSG00000028688	Toe1	4930584N22Rik|4933424D16Rik|AI413517	target of EGR1, member 1 (nuclear)	protein-coding	2.0	0.5	1.0	0.0	2.0	1.0
Merged-chr17-13761455-4	chr17	13760929	13761929	+	912.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022311)	promoter-TSS (NM_022311)	-35.0	NM_022311	21646.0	Mm.486358	NM_022311	ENSMUSG00000038347	Tcte2	AI429268|Tcte-2	t-complex-associated testis expressed 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47402712-2	chr19	47402212	47403212	+	912.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 2 of 14)	intron (NM_008018, intron 2 of 14)	61699.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0.0	1.5	0.5	0.0	0.0	0.0
Merged-chr8-117061709-4	chr8	117061218	117062218	+	912.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 9 of 42)	intron (NM_029686, intron 9 of 42)	20731.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80107270-3	chr10	80106785	80107785	+	912.492065	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	B1_Mm|SINE|Alu	-4583.0	NM_001359637	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123664739-4	chr4	123664218	123665218	+	912.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 1 of 92)	CpG	-1163.0	NR_136925	102633214.0	Mm.399387	NR_136925		Gm12925	-	predicted gene 12925	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146479398-3	chr6	146478845	146479845	+	912.4682619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 1 of 56)	intron (NM_019923, intron 1 of 56)	22878.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	1.5	5.0	3.0	13.5	7.5	12.0
Merged-chr13-104285111-4	chr13	104284603	104285603	+	912.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2732.0	NR_136938	108154.0	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-96431904-4	chr13	96431401	96432401	+	912.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042714, intron 9 of 13)	intron (NM_001042714, intron 9 of 13)	39259.0	NM_001042714	271144.0	Mm.470057	NM_001042714	ENSMUSG00000047117	Ankdd1b	9330128J19Rik	ankyrin repeat and death domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51349829-4	chr11	51349335	51350335	+	912.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153393, intron 2 of 28)	intron (NM_153393, intron 2 of 28)	59915.0	NM_153393	237759.0	Mm.154093	NM_153393	ENSMUSG00000063564	Col23a1	2810458L13Rik|AI429655	collagen, type XXIII, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-91598796-3	chr7	91598328	91599328	+	912.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011807, intron 2 of 22)	RMER6A|LTR|ERVK	-463566.0	NM_001243046	23859.0	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs large MAGUK scaffold protein 2	protein-coding	5.0	3.0	0.0	0.5	1.5	2.0
Merged-chr2-167662601-3	chr2	167662067	167663067	+	912.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1023.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56924952-4	chr18	56924562	56925562	+	912.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177115, intron 1 of 4)	CpG	486.0	NM_177115	320253.0	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	2.0	18.5	10.5	3.5	14.0	9.5
Merged-chr16-58501194-6	chr16	58500708	58501708	+	912.422241	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 2 of 10)	L1_Mus4|LINE|L1	22218.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137807680-3	chr4	137807129	137808129	+	912.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1O|LTR|ERVL-MaLR	-11245.0	NM_007431	11647.0	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	0.5	1.0	2.0	4.0	4.5	1.5
Merged-chr3-97661418-4	chr3	97660929	97661929	+	912.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182997, intron 2 of 7)	MER58A|DNA|hAT-Charlie	3217.0	NM_182997	108097.0	Mm.31175	NM_182997	ENSMUSG00000038205	Prkab2	5730553K21Rik|AW049591|BB124140	protein kinase, AMP-activated, beta 2 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-45486288-3	chr10	45485825	45486825	+	912.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-16124.0	NM_001031772	380669.0	Mm.440328	NM_001031772	ENSMUSG00000063804	Lin28b	2810403D23Rik|D030047M17Rik|Lin-28.2	lin-28 homolog B (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122810336-4	chr6	122809831	122810831	+	912.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-9853.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-41402029-4	chr3	41401532	41402532	+	912.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91167.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5843590-7	chr17	5843108	5844108	+	912.357117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025664, intron 1 of 17)	intron (NM_025664, intron 1 of 17)	2228.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-33047651-4	chr13	33047139	33048139	+	912.345825	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	20225.0	NM_011452	20706.0	Mm.45371	NM_011452	ENSMUSG00000021403	Serpinb9b	1600019A21Rik|R86|SPI-CI|Spi10|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9b	protein-coding	12.0	43.0	62.5	21.0	69.0	61.0
Merged-chr9-21531304-2	chr9	21530804	21531804	+	912.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_206536, intron 2 of 5)	B1_Mur1|SINE|Alu	5127.0	NM_206536	382062.0	Mm.325205	NM_206536	ENSMUSG00000057191	AB124611	Gm1706	cDNA sequence AB124611	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31040301-2	chr17	31039801	31040801	+	912.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17393.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4629850-3	chr11	4629355	4630355	+	912.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027797, intron 1 of 3)	MIR3|SINE|MIR	156.0	NR_027797	327860.0	Mm.186065	NM_177799	ENSMUSG00000056288	Gm11961	-	predicted gene 11961	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95323583-3	chr10	95323092	95324092	+	912.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001330138, exon 1 of 3)	5' UTR (NM_001330138, exon 1 of 3)	117.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134671040-4	chr6	134670567	134671567	+	912.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170479, intron 2 of 3)	intron (NM_001170479, intron 2 of 3)	30127.0	NM_026371	67774.0	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	0.0	4.5	4.0	0.0	2.5	1.0
Merged-chr1-86531077-3	chr1	86530583	86531583	+	912.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360831)	TTS (NM_001360831)	4526.0	NM_001360830	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-75819315-3	chr12	75818806	75819806	+	912.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005510, intron 1 of 115)	intron (NM_001005510, intron 1 of 115)	988.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11970552-3	chr19	11970055	11971055	+	912.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033174, intron 1 of 13)	intron (NM_001033174, intron 1 of 13)	4711.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	0.0	1.5	2.0	0.0	14.5	8.0
Merged-chr15-80799290-3	chr15	80798779	80799779	+	912.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177124, intron 1 of 21)	(TC)n|Simple_repeat|Simple_repeat	669.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92852089-2	chr16	92851589	92852589	+	912.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-26015.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-78846520-3	chr7	78846039	78847039	+	912.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029585, intron 1 of 4)	intron (NM_029585, intron 1 of 4)	672.0	NM_029585	76375.0	Mm.250541	NM_029585	ENSMUSG00000030610	Det1	2610034H20Rik	de-etiolated homolog 1 (Arabidopsis)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-108383457-3	chr4	108382915	108383915	+	912.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001099303, exon 1 of 3)	5' UTR (NM_001099303, exon 1 of 3)	240.0	NM_001099303	545667.0	Mm.380025	NM_001099303	ENSMUSG00000059816	Fam159a	Shisal2a	family with sequence similarity 159, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-68951994-4	chr8	68951494	68952494	+	912.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	71439.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	39.0	71.0	113.0	13.0	35.0	50.5
Merged-chr10-56339285-4	chr10	56338782	56339782	+	912.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38018.0	NM_010288	14609.0	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-35917523-4	chr15	35916990	35917990	+	912.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177151, intron 58 of 61)	intron (NM_177151, intron 58 of 61)	20756.0	NM_053071	12864.0	Mm.548	NM_053071	ENSMUSG00000014313	Cox6c	-	cytochrome c oxidase subunit VIc	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-17741685-4	chr2	17741196	17742196	+	912.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10628.0	NM_028757	74103.0	Mm.120298	NM_028757	ENSMUSG00000053702	Nebl	1200007O21Rik|A630080F05Rik|BB140644|D830029A09Rik|Lnebl	nebulette	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57835283-4	chr10	57834812	57835812	+	912.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40768.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88609720-2	chr3	88609220	88610220	+	912.2999880000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-6487.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	30.5	59.5	39.5	30.0	61.0	43.0
Merged-chr5-108248727-4	chr5	108248227	108249227	+	912.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-20170.0	NM_026106	13486.0	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	1.0	2.5	4.0	0.0	1.0	8.0
Merged-chr8-46142877-4	chr8	46142373	46143373	+	912.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18727.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34331471-3	chr17	34330969	34331969	+	912.288879	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033978, intron 1 of 4)	intron (NM_001033978, intron 1 of 4)	5794.0	NM_001033978	381091.0	Mm.139204	NM_001033978	ENSMUSG00000067341	H2-Eb2	A130038H09Rik|H-2Eb2|Ia-5|Ia5|Iebeta2	histocompatibility 2, class II antigen E beta2	protein-coding	8.0	1.0	4.0	6.0	10.0	1.5
Merged-chr6-108723438-3	chr6	108722961	108723961	+	912.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59598.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	2.5	0.0	1.5	7.5	0.0	1.0
Merged-chr9-100570784-3	chr9	100570299	100571299	+	912.276184	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101483, intron 1 of 1)	CpG	286.0	NM_001101483	245020.0	Mm.236289	NM_001101483	ENSMUSG00000070287	Slc35g2	Gm519|Tmem22	solute carrier family 35, member G2	protein-coding	3.5	11.5	9.0	3.0	9.0	2.0
Merged-chr11-106664657-4	chr11	106664162	106665162	+	912.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 13 of 14)	intron (NM_001305158, intron 13 of 14)	50619.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3676610-3	chr11	3676124	3677124	+	912.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198162, intron 8 of 25)	intron (NM_198162, intron 8 of 25)	17924.0	NM_198162	74522.0	Mm.139127	NM_198162	ENSMUSG00000034543	Morc2a	8430403M08Rik|Zcwcc1	microrchidia 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122230820-2	chr8	122230320	122231320	+	912.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-51321.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44029452-4	chr16	44028961	44029961	+	912.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359085, intron 4 of 16)	intron (NM_001359085, intron 4 of 16)	-1516.0	NM_001172107	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-35482505-4	chr13	35481996	35482996	+	912.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-177366.0	NM_009881	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59836219-4	chr13	59835730	59836730	+	912.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13083.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	1.0	28.0	3.5	12.5	27.5	19.5
Merged-chr10-67717718-3	chr10	67717208	67718208	+	912.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-145749.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-72987863-3	chr9	72987359	72988359	+	912.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359295, intron 1 of 9)	intron (NM_001359295, intron 1 of 9)	2355.0	NM_001286544	72278.0	Mm.268475	NM_028181	ENSMUSG00000034563	Ccpg1	1700030B06Rik|1810073J13Rik|9430028F23Rik|AI426686|AI875170|CPR8|D9Ertd392e	cell cycle progression 1	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr2-59245317-3	chr2	59244949	59245949	+	912.214294	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	RSINE1|SINE|B4	84599.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3511674-4	chr4	3511183	3512183	+	912.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25407.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	19.5	44.5	25.0	18.0	12.0	19.0
Merged-chr6-57521078-4	chr6	57520576	57521576	+	912.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175523, intron 3 of 6)	intron (NM_175523, intron 3 of 6)	14350.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-52141851-4	chr14	52141363	52142363	+	912.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023879, intron 14 of 24)	intron (NM_023879, intron 14 of 24)	30960.0	NM_023879	77945.0	Mm.21662	NM_023879	ENSMUSG00000057132	Rpgrip1	0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding	21.0	15.5	31.5	6.0	13.5	11.5
Merged-chr11-3289398-4	chr11	3288912	3289912	+	912.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045108, intron 1 of 5)	CpG	281.0	NR_045109	56218.0	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-107436480-5	chr8	107435997	107436997	+	912.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025830)	promoter-TSS (NM_025830)	99.0	NM_025830	66894.0	Mm.390058	NM_025830	ENSMUSG00000031930	Wwp2	1300010O06Rik|AA690238|AIP2|AW554328	WW domain containing E3 ubiquitin protein ligase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105349092-7	chr8	105348541	105349541	+	912.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081332, exon 1 of 16)	5' UTR (NM_001081332, exon 1 of 16)	783.0	NM_001081332	277973.0	Mm.334766	NM_001081332	ENSMUSG00000014786	Slc9a5	Gm696	solute carrier family 9 (sodium/hydrogen exchanger), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59842366-4	chr13	59841870	59842870	+	912.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-19223.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr13-12464343-4	chr13	12463837	12464837	+	912.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-2599.0	NM_001291057	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51913463-3	chr14	51912966	51913966	+	912.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145959)	promoter-TSS (NM_001145959)	22.0	NM_001145959	29811.0	Mm.26722	NM_013864	ENSMUSG00000004558	Ndrg2	AI182517|AU040374|Ndr2|SYLD	N-myc downstream regulated gene 2	protein-coding	0.0	5.5	3.5	5.0	3.5	0.0
Merged-chr11-32348314-3	chr11	32347816	32348816	+	912.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177364, intron 1 of 12)	intron (NM_177364, intron 1 of 12)	505.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-22845642-3	chr14	22845131	22846131	+	912.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 6 of 6)	intron (NM_028275, intron 6 of 6)	248940.0	NR_033550	791307.0	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	-	predicted gene 10248	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4100947-3	chr19	4100504	4101504	+	912.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008851, exon 1 of 23)	5' UTR (NM_008851, exon 1 of 23)	382.0	NM_008851	18739.0	Mm.1860	NM_008851	ENSMUSG00000024851	Pitpnm1	DRES9|Mpt-1|Nir-2|PITPnm 1|Pitpnm|R75447|Rd9|RdgB|RdgB1	phosphatidylinositol transfer protein, membrane-associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60775324-3	chr18	60774819	60775819	+	912.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020600, intron 1 of 4)	intron (NM_020600, intron 1 of 4)	723.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	6.5	85.0	55.0	45.0	91.5	64.5
Merged-chr15-77831476-4	chr15	77830981	77831981	+	912.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	10694.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9865874-4	chr18	9865368	9866368	+	912.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 7 of 9)	intron (NM_130449, intron 7 of 9)	-92312.0	NM_153552	225160.0	Mm.219648	NM_153552	ENSMUSG00000024287	Thoc1	3110002N20Rik|AW107452|NMP-84	THO complex 1	protein-coding	0.0	0.0	0.0	0.0	5.0	1.0
Merged-chr17-31067245-4	chr17	31066721	31067721	+	912.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	9527.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	57.5	136.5	44.0	53.0	182.5	121.0
Merged-chr13-99187073-4	chr13	99186606	99187606	+	912.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	2283.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	59.0	141.5	97.0	33.5	123.5	111.0
Merged-chr8-60867848-7	chr8	60867330	60868330	+	912.11908	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22563.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-124015548-3	chr9	124014997	124015997	+	912.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-6474.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8362301-4	chr10	8361805	8362805	+	912.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 2 of 7)	intron (NM_177387, intron 2 of 7)	156520.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49191120-5	chr13	49190628	49191628	+	912.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013610, intron 1 of 3)	intron (NM_013610, intron 1 of 3)	3581.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96559241-5	chr9	96558758	96559758	+	912.0866699999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053268, intron 16 of 23)	MLTR11B|LTR|ERVK	72245.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75515358-2	chr10	75514858	75515858	+	912.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347201, intron 1 of 5)	intron (NM_001347201, intron 1 of 5)	2023.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115480275-4	chr5	115479761	115480761	+	912.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001167691, exon 3 of 5)	exon (NM_001167691, exon 3 of 5)	4036.0	NM_001167691	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	2.5	12.0	22.0	10.5	31.5	30.5
Merged-chr18-36304553-4	chr18	36304061	36305061	+	912.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4460.0	NM_001267796	109169.0	Mm.426423	NM_001267796	ENSMUSG00000110185	Igip	6330403M23Rik	IgA inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96658948-4	chr15	96658436	96659436	+	912.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16023.0	NM_001166458	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118564681-4	chr14	118564172	118565172	+	912.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163676, intron 18 of 29)	intron (NM_001163676, intron 18 of 29)	27800.0	NR_105815	102465208.0		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-6062451-4	chr13	6061979	6062979	+	912.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	200990.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71144480-4	chr17	71143980	71144980	+	912.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39052.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.0	17.0	6.5	3.0	8.0	7.0
Merged-chr2-93129395-4	chr2	93128864	93129864	+	912.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58184.0	NM_001356536	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9790797-5	chr18	9790279	9791279	+	912.0633539999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 2 of 9)	L1_Mus2|LINE|L1	83131.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	6.0	3.0	6.0	31.0	46.0	55.5
Merged-chr15-28395889-4	chr15	28395401	28396401	+	912.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133365, intron 58 of 78)	(TTC)n|Simple_repeat|Simple_repeat	192135.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37548178-3	chr19	37547684	37548684	+	912.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2234.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	27.5	24.0	11.0	7.0	26.0	18.5
Merged-chr3-129969539-4	chr3	129969028	129970028	+	912.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025779, intron 1 of 7)	intron (NM_025779, intron 1 of 7)	678.0	NM_025779	66815.0	Mm.31056	NM_025779	ENSMUSG00000027994	Mcub	9030408N13Rik|Ccdc109b	mitochondrial calcium uniporter dominant negative beta subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121904565-4	chr9	121904080	121905080	+	912.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276719, intron 2 of 3)	intron (NM_001276719, intron 2 of 3)	6225.0	NM_021609	59289.0	Mm.258105	NM_021609	ENSMUSG00000044534	Ackr2	AI464239|CCR10|CCR9|Ccbp2|Cmkbr9|D6	atypical chemokine receptor 2	protein-coding	0.0	2.0	0.0	0.0	0.0	0.0
Merged-chr2-18655013-4	chr2	18654520	18655520	+	912.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-17442.0	NM_147778	12238.0	Mm.249586	NM_147778	ENSMUSG00000051154	Commd3	AW550818|Bup|D2Ertd542e	COMM domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-38029412-3	chr7	38028926	38029926	+	912.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-9874.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	4.0	13.0	5.5	9.0	33.5	27.5
Merged-chr15-59906705-3	chr15	59906225	59907225	+	912.0277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109893.0	NM_027668	71088.0	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57062337-2	chr17	57061837	57062837	+	912.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001347408, exon 1 of 5)	5' UTR (NM_001347408, exon 1 of 5)	106.0	NM_177638	224912.0	Mm.284447	NM_177638	ENSMUSG00000044279	Crb3	5730439B18|AU015179|AU041752	crumbs family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34178561-2	chr6	34178061	34179061	+	912.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5B|DNA|hAT-Charlie	-1507.0	NM_021435	58246.0	Mm.245527	NM_021435	ENSMUSG00000018999	Slc35b4	4930474D06Rik|AB041549|AW494345	solute carrier family 35, member B4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43495107-1	chr19	43494607	43495607	+	912.0	f1_c57bl6.idr	3' UTR (NM_031396, exon 11 of 11)	3' UTR (NM_031396, exon 11 of 11)	29498.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	0.0	0.0	0.0	8.5	0.0	0.0
Merged-chr5-135491593-2	chr5	135491093	135492093	+	912.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	53529.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78149990-4	chr9	78149509	78150509	+	912.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163780, intron 5 of 13)	intron (NM_001163780, intron 5 of 13)	-25905.0	NR_040401	320295.0	Mm.131285	NR_040401	ENSMUSG00000097574	C920006O11Rik	-	RIKEN cDNA C920006O11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106539138-2	chr8	106538638	106539638	+	912.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007665, exon 7 of 16)	exon (NM_007665, exon 7 of 16)	28286.0	NM_001037809	12560.0	Mm.4658	NM_007665	ENSMUSG00000061048	Cdh3	AI385538|Cadp|Cdhp|P-cadherin|Pcad	cadherin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25216217-2	chr12	25215717	25216717	+	912.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	87043.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95981679-2	chr16	95981179	95982179	+	912.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019537, intron 6 of 6)	intron (NM_019537, intron 6 of 6)	9281.0	NM_019537	56088.0	Mm.396248	NM_019537	ENSMUSG00000022913	Psmg1	AW552102|Dscr2	proteasome (prosome, macropain) assembly chaperone 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118103541-2	chr11	118103041	118104041	+	912.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167746, intron 19 of 80)	intron (NM_001167746, intron 19 of 80)	25678.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63146447-3	chr14	63145950	63146950	+	912.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007798)	TTS (NM_007798)	23988.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27859629-2	chr7	27859129	27860129	+	912.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024726)	promoter-TSS (NM_001024726)	-956.0	NM_001024726	545938.0	Mm.458180	NM_001024726	ENSMUSG00000020420	Zfp607a	4732475C15Rik|Zfp607	zinc finger protein 607A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148553527-2	chr5	148553048	148554048	+	912.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011908)	promoter-TSS (NM_011908)	-760.0	NM_001359199	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	28.5	12.5	25.0	9.0	15.0	6.5
Merged-chr12-85472947-1	chr12	85472447	85473447	+	912.0	f0_c57.idr	promoter-TSS (NM_010234)	promoter-TSS (NM_010234)	-943.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79859315-2	chr10	79858815	79859815	+	912.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077363, intron 4 of 13)	intron (NM_001077363, intron 4 of 13)	-3272.0	NR_105875	102465549.0		NR_105875	ENSMUSG00000098562	Mir6910	Gm27763|mmu-mir-6910	microRNA 6910	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75831592-2	chr14	75831092	75832092	+	912.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13372.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-16089117-3	chr4	16088603	16089603	+	912.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74540.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113468747-2	chr6	113468247	113469247	+	912.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145826, intron 12 of 14)	intron (NM_145826, intron 12 of 14)	-2708.0	NM_178942	171095.0	Mm.213397	NM_134159	ENSMUSG00000030281	Il17rc	1110025H02Rik|Gm19850|IL-17RC|IL17-RC|IL17-RL|Il17rl	interleukin 17 receptor C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119274198-2	chr11	119273698	119274698	+	912.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008064, intron 4 of 19)	intron (NM_008064, intron 4 of 19)	6235.0	NM_008064	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	4.0	3.5	1.0	3.5	9.5	1.0
Merged-chr17-8149032-2	chr17	8148532	8149532	+	912.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1200.0	NM_026611	68195.0	Mm.181237	NM_026611	ENSMUSG00000094724	Rnaset2b	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62781504-2	chr4	62781004	62782004	+	912.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	107530.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79704897-1	chr10	79704397	79705397	+	912.0	f0_c57.idr	intron (NM_001077184, intron 1 of 6)	intron (NM_001077184, intron 1 of 6)	539.0	NM_009768	12215.0	Mm.726	NM_009768	ENSMUSG00000023175	Bsg	AI115436|AI325119|CD147|EMMPRIN|HT-7	basigin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155281718-2	chr1	155281218	155282218	+	912.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011273, intron 14 of 14)	intron (NM_011273, intron 14 of 14)	123015.0	NM_021433	58244.0	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-16870393-2	chr12	16869894	16870894	+	912.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24584.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	38.5	89.0	36.0	61.0	166.5	110.0
Merged-chr2-92370835-2	chr2	92370335	92371335	+	912.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172670, exon 2 of 15)	exon (NM_172670, exon 2 of 15)	222.0	NM_001290774	228366.0	Mm.31158	NM_172670	ENSMUSG00000040434	Large2	5730485C17Rik|AI891893|Gyltl1b|Largel|mKIAA4105	LARGE xylosyl- and glucuronyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117964293-2	chr11	117963793	117964793	+	912.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5073.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120783860-3	chr8	120783363	120784363	+	912.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45224.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167218313-2	chr2	167217813	167218813	+	912.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008968, intron 5 of 9)	intron (NM_008968, intron 5 of 9)	22224.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119946922-3	chr11	119946423	119947423	+	912.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037754, intron 1 of 13)	intron (NM_001037754, intron 1 of 13)	3831.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145861763-3	chr2	145861254	145862254	+	912.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 9 of 12)	intron (NM_028724, intron 9 of 12)	-41487.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	15.5	26.5	19.5	22.5	35.5	20.0
Merged-chr5-136929228-3	chr5	136928728	136929728	+	912.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015555, intron 3 of 3)	intron (NR_015555, intron 3 of 3)	10082.0	NR_015555	66752.0	Mm.135764	NR_015555	ENSMUSG00000097908	4933404O12Rik	AW494809	RIKEN cDNA 4933404O12 gene	ncRNA	11.5	3.0	2.5	0.0	9.0	3.0
Merged-chr8-91071225-2	chr8	91070751	91071751	+	912.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011250, intron 1 of 21)	intron (NM_011250, intron 1 of 21)	1194.0	NM_001282000	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	83.5	170.0	160.5	53.5	98.5	103.5
Merged-chr7-43644398-2	chr7	43643898	43644898	+	912.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028236, intron 4 of 5)	intron (NM_028236, intron 4 of 5)	9659.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58261156-2	chr15	58260656	58261656	+	912.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46264.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100952340-2	chr12	100951840	100952840	+	912.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026681, intron 12 of 29)	intron (NM_026681, intron 12 of 29)	-44142.0	NM_001177673	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134245089-1	chr6	134244589	134245589	+	912.0	f1_balb.idr	intron (NM_001303102, intron 5 of 8)	intron (NM_001303102, intron 5 of 8)	-151240.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	27.0	28.5	30.5	16.5	68.0	30.5
Merged-chr4-11108168-2	chr4	11107668	11108668	+	912.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15790.0	NR_151526	100503518.0	Mm.102270	NR_151526	ENSMUSG00000086765	Gm11827	-	predicted gene 11827	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-30777916-4	chr10	30777431	30778431	+	912.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 1 of 14)	intron (NM_001358842, intron 1 of 14)	25395.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111039927-3	chr9	111039469	111040469	+	911.9833369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008522, intron 15 of 16)	intron (NM_008522, intron 15 of 16)	17275.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25707780-4	chr14	25707245	25708245	+	911.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6463.0	NR_028021	68173.0	Mm.444727	NM_026595		Ppifos	4930520F12Rik|Ppifs	peptidylprolyl isomerase F, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-193897022-4	chr1	193896501	193897501	+	911.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	325758.0	NR_040477	74942.0	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62103642-4	chr11	62103148	62104148	+	911.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029936, intron 1 of 12)	MLT1G3|LTR|ERVL-MaLR	26624.0	NM_001029936	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144982855-4	chr3	144982345	144983345	+	911.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-7800.0	NM_207208	99663.0	Mm.442050	NM_207208	ENSMUSG00000068547	Clca4a	9130020L07Rik|AI504701|Clca4|Clca6	chloride channel accessory 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26462772-4	chr17	26462285	26463285	+	911.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45687.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30504252-4	chr16	30503750	30504750	+	911.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR3|LTR|Gypsy	46328.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-66410203-4	chr2	66409695	66410695	+	911.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313997, intron 1 of 26)	intron (NM_001313997, intron 1 of 26)	30642.0	NM_018733	20265.0	Mm.439704	NM_018733	ENSMUSG00000064329	Scn1a	B230332M13|Nav1.1	sodium channel, voltage-gated, type I, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25320833-4	chr17	25320342	25321342	+	911.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053260, intron 3 of 5)	intron (NM_053260, intron 3 of 5)	2188.0	NM_053260	114662.0	Mm.207082	NM_053260	ENSMUSG00000034039	Prss29	D19363|Isp2|mISP-2	protease, serine 29	protein-coding	0.5	0.0	5.0	9.0	27.5	36.0
Merged-chr10-94689298-4	chr10	94688774	94689774	+	911.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015524)	promoter-TSS (NR_015524)	484.0	NM_029852	77048.0	Mm.296971	NM_029852	ENSMUSG00000020024	Cep83	2600001G24Rik|4921537D05Rik|5730513H21Rik|Ccdc41	centrosomal protein 83	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-6411219-4	chr18	6410739	6411739	+	911.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79407.0	NR_035446	100316773.0		NR_035446	ENSMUSG00000084514	Mir1893	Mirn1893|mmu-mir-1893	microRNA 1893	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128909765-4	chr10	128909259	128910259	+	911.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007653)	promoter-TSS (NM_007653)	-107.0	NM_007653	12512.0	Mm.371552	NM_007653	ENSMUSG00000025351	Cd63	C75951|ME491|Tspan30	CD63 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62041328-4	chr15	62040813	62041813	+	911.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	2056.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	5.5	8.5	8.0	0.0	16.5	5.5
Merged-chr17-34912294-4	chr17	34911797	34912797	+	911.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286575, intron 25 of 27)	intron (NM_001286575, intron 25 of 27)	-2169.0	NM_023557	70129.0	Mm.183126	NM_023557	ENSMUSG00000007034	Slc44a4	2210409B01Rik|NG22|mTPPT1	solute carrier family 44, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145320356-2	chr6	145319852	145320852	+	911.916626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-67273.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	5.0	4.5	2.5	16.0	5.0	0.0
Merged-chr16-10495155-4	chr16	10494647	10495647	+	911.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302619, intron 2 of 19)	RLTR35B_MM|LTR|ERVL	5366.0	NM_001243761	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36935397-3	chr15	36934884	36935884	+	911.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	72018.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89437566-4	chr3	89437045	89438045	+	911.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146131, intron 1 of 10)	intron (NM_146131, intron 1 of 10)	841.0	NM_146131	229534.0	Mm.65906	NM_146131	ENSMUSG00000042613	Pbxip1	4732463H20Rik	pre B cell leukemia transcription factor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80078081-3	chr7	80077527	80078527	+	911.8777470000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	-2770.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	7.5	13.0	26.0	5.0	17.0	21.5
Merged-chr17-25131273-4	chr17	25130752	25131752	+	911.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-2139.0	NM_011930	26373.0	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	15.5	51.0	29.0	18.0	40.5	39.5
Merged-chr12-34432010-4	chr12	34431510	34432510	+	911.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 6 of 27)	intron (NM_001271386, intron 6 of 27)	96879.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	2.0	0.0	3.0	2.0	0.0	4.0
Merged-chr5-36830125-4	chr5	36829607	36830607	+	911.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008550, intron 1 of 18)	intron (NM_008550, intron 1 of 18)	542.0	NM_008550	17160.0	Mm.761	NM_008550	ENSMUSG00000029119	Man2b2	mKIAA0935	mannosidase 2, alpha B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43496075-4	chr19	43495584	43496584	+	911.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_031396, exon 11 of 11)	3' UTR (NM_031396, exon 11 of 11)	28521.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	0.0	0.0	0.5	0.0	1.5	1.0
Merged-chr10-3840097-4	chr10	3839626	3840626	+	911.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159942, intron 2 of 16)	intron (NM_001159942, intron 2 of 16)	-32541.0	NM_001033253	213783.0	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86583770-4	chr6	86583273	86584273	+	911.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44401.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-25223575-4	chr5	25223080	25224080	+	911.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144908, intron 1 of 11)	intron (NM_144908, intron 1 of 11)	708.0	NM_144908	231050.0	Mm.246718	NM_144908	ENSMUSG00000038072	Galnt11	A430075I06Rik|AI648252|E430002F06Rik	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64338101-4	chr1	64337618	64338618	+	911.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-194686.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-10273364-4	chr3	10272857	10273857	+	911.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029310, intron 1 of 5)	Lx8|LINE|L1	-19105.0	NM_001357160	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59415156-2	chr15	59414656	59415656	+	911.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 2 of 4)	intron (NM_001164604, intron 2 of 4)	40958.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129083712-4	chr2	129083201	129084201	+	911.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027192, intron 5 of 6)	intron (NM_027192, intron 5 of 6)	-17295.0	NM_009086	20017.0	Mm.259078	NM_009086	ENSMUSG00000027395	Polr1b	128kDa|D630020H17Rik|RPA116|RPA135|RPA2|Rpo1-2	polymerase (RNA) I polypeptide B	protein-coding	1.0	3.0	12.0	5.0	7.5	4.0
Merged-chr4-97910602-4	chr4	97910102	97911102	+	911.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	132976.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171382273-4	chr1	171381776	171382776	+	911.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122680, intron 2 of 7)	B2_Mm1t|SINE|B2	-6684.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	6.0	36.0	5.5	0.0	20.5	6.5
Merged-chr10-43478655-5	chr10	43478134	43479134	+	911.7999880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199028)	promoter-TSS (NM_199028)	-506.0	NM_199028	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-136700834-4	chr3	136700343	136701343	+	911.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	30777.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32757723-4	chr2	32757268	32758268	+	911.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290563, intron 14 of 14)	intron (NM_001290563, intron 14 of 14)	534.0	NM_152800	30933.0	Mm.200695	NM_152800	ENSMUSG00000009563	Tor2a	Prosalusin	torsin family 2, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38381452-3	chr18	38380934	38381934	+	911.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37473.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-115805488-4	chr9	115804979	115805979	+	911.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103976.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	6.0	2.0	0.0	6.0	2.0	0.0
Merged-chr19-9988258-19	chr19	9987749	9988749	+	911.7510990000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011913, intron 9 of 11)	intron (NM_011913, intron 9 of 11)	5603.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.0	2.0	2.5	1.5	0.0	1.5
Merged-chr11-3162662-4	chr11	3162131	3163131	+	911.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 9 of 32)	intron (NM_030207, intron 9 of 32)	30832.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117199047-2	chr11	117198547	117199547	+	911.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113486)	promoter-TSS (NM_001113486)	-614.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-85182925-2	chr10	85182425	85183425	+	911.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_007771, intron 1 of 12)	L1MB7|LINE|L1	2129.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4548822-4	chr12	4548325	4549325	+	911.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24712.0	NR_136891	102634330.0	Mm.402324	NR_136891	ENSMUSG00000112422	Gm31938	-	predicted gene, 31938	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145720937-4	chr2	145720437	145721437	+	911.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 2 of 3)	intron (NR_033220, intron 2 of 3)	19742.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-110604773-4	chr8	110604269	110605269	+	911.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172916, intron 85 of 86)	intron (NM_172916, intron 85 of 86)	-13798.0	NR_151674	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160212539-4	chr2	160212058	160213058	+	911.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114936.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39851318-4	chr1	39850816	39851816	+	911.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3986.0	NR_040465	73426.0	Mm.396239	NR_040465	ENSMUSG00000101634	1700066B17Rik	-	RIKEN cDNA 1700066B17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-116461382-4	chr12	116460886	116461886	+	911.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133762, exon 29 of 29)	3' UTR (NM_133762, exon 29 of 29)	-24334.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	31.5	63.5	69.5	32.5	54.5	42.5
Merged-chr19-53170824-4	chr19	53170332	53171332	+	911.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013758, intron 1 of 15)	intron (NM_013758, intron 1 of 15)	26835.0	NM_013758	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9834384-4	chr13	9833870	9834870	+	911.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_T|LINE|L1	-69049.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125141682-2	chr5	125141185	125142185	+	911.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011424, intron 1 of 46)	intron (NM_011424, intron 1 of 46)	37529.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0.0	8.0	7.5	3.5	8.0	5.0
Merged-chr11-117978037-4	chr11	117977562	117978562	+	911.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8696.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-60977872-4	chr1	60977377	60978377	+	911.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017480)	promoter-TSS (NM_017480)	-37.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	7.5	18.5	18.0	11.5	17.5	15.5
Merged-chr11-30268025-9	chr11	30267485	30268485	+	911.740723	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-48213.0	NM_175836	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127560714-4	chr3	127560253	127561253	+	911.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197997, intron 4 of 25)	intron (NM_197997, intron 4 of 25)	7264.0	NM_197997	71643.0	Mm.274884	NM_197997	ENSMUSG00000051278	Zgrf1	4930422G04Rik|AI448607	zinc finger, GRF-type containing 1	protein-coding	12.5	13.5	13.5	10.5	3.0	16.5
Merged-chr6-24984802-3	chr6	24984300	24985300	+	911.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28675.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128391470-5	chr7	128391011	128392011	+	911.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 3 of 4)	intron (NM_026418, intron 3 of 4)	26661.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121694111-4	chr3	121693611	121694611	+	911.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23348.0	NM_001033814	619318.0	Mm.371258	NM_001033814	ENSMUSG00000074248	4930432M17Rik	-	RIKEN cDNA 4930432M17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5842416-4	chr19	5841989	5842989	+	911.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_003513, exon 1 of 1)	non-coding (NR_003513, exon 1 of 1)	2989.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129315069-4	chr2	129314564	129315564	+	911.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5092.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	13.0	25.0	9.0	5.5	9.0	9.5
Merged-chr12-111165303-4	chr12	111164797	111165797	+	911.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130987, intron 2 of 3)	intron (NR_130987, intron 2 of 3)	-1073.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30796653-4	chr2	30796158	30797158	+	911.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028487, intron 4 of 6)	intron (NR_028487, intron 4 of 6)	5079.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31434222-5	chr14	31433784	31434784	+	911.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 1 of 8)	intron (NM_011894, intron 1 of 8)	1816.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105665211-4	chr1	105664693	105665693	+	911.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173187, intron 1 of 28)	intron (NM_173187, intron 1 of 28)	1332.0	NM_029349	227446.0	Mm.337339	NM_029349	ENSMUSG00000026319	2310035C23Rik	6430401N10|Kiaa1468|Relch|mKIAA1468	RIKEN cDNA 2310035C23 gene	protein-coding	10.0	4.5	1.0	5.0	11.0	0.5
Merged-chr10-13087430-3	chr10	13086942	13087942	+	911.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-3346.0	NM_009538	22634.0	Mm.287857	NM_009538	ENSMUSG00000019817	Plagl1	Lot1|Zac1	pleiomorphic adenoma gene-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-143956369-3	chr1	143955883	143956883	+	911.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47766.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-79271583-3	chr18	79271080	79272080	+	911.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-162189.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26188747-4	chr2	26188242	26189242	+	911.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	17833.0	NM_001039653	16871.0	Mm.386765	NM_010711	ENSMUSG00000026934	Lhx3	Lim3|P-LIM|mLIM3|mLim-3	LIM homeobox protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106004882-3	chr8	106004375	106005375	+	911.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-6603.0	NM_025518	66369.0	Mm.287500	NM_025518	ENSMUSG00000031901	Dus2	2310016K04Rik|Dus2l	dihydrouridine synthase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-78509796-4	chr8	78509293	78510293	+	911.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009033)	promoter-TSS (NM_009033)	465.0	NM_001282108	76775.0	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103939755-3	chr11	103939247	103940247	+	911.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008740, intron 1 of 20)	L1M4|LINE|L1	14309.0	NM_008740	18195.0	Mm.260117	NM_008740	ENSMUSG00000034187	Nsf	AI316878|AU020090|AU067812|SKD2	N-ethylmaleimide sensitive fusion protein	protein-coding	7.5	10.0	16.0	6.0	8.5	22.0
Merged-chr2-174932911-3	chr2	174932390	174933390	+	911.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134879.0	NM_001085546	664987.0		NM_001085546	ENSMUSG00000078905	Gm14393	-	predicted gene 14393	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116627803-3	chr11	116627310	116628310	+	911.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172572)	promoter-TSS (NM_172572)	-791.0	NM_172572	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	10.5	3.5	6.0	21.5	24.0	13.5
Merged-chr11-47075278-3	chr11	47074729	47075729	+	911.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 6 of 7)	intron (NM_011891, intron 6 of 7)	264430.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-70601593-3	chr4	70601084	70602084	+	911.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66656.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-140855836-2	chr7	140855336	140856336	+	911.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_018742, intron 1 of 3)	intron (NM_018742, intron 1 of 3)	547.0	NM_018742	54399.0	Mm.155696	NM_018742	ENSMUSG00000025484	Bet1l	2610021K23Rik|Gs15	Bet1 golgi vesicular membrane trafficking protein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72861861-3	chr5	72861345	72862345	+	911.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 1 of 17)	intron (NM_013689, intron 1 of 17)	6603.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46411748-3	chr4	46411254	46412254	+	911.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7571.0	NM_053149	93966.0	Mm.25793	NM_053149	ENSMUSG00000028332	Hemgn	4921524M03Rik|AI317176|EDAG|Hgn|mNDR	hemogen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145871782-1	chr2	145871282	145872282	+	911.6666869999999	f0_balb.idr	intron (NM_028724, intron 9 of 12)	intron (NM_028724, intron 9 of 12)	-31459.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	4.5	6.0	13.5	9.5	7.0	8.5
Merged-chr6-29762727-3	chr6	29762225	29763225	+	911.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5718.0	NM_021414	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0.0	0.0	4.5	0.0	2.5	0.0
Merged-chr16-30060001-2	chr16	30059501	30060501	+	911.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5356.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	3.5	0.0	2.0	0.0	1.5	0.0
Merged-chr12-103164737-4	chr12	103164242	103165242	+	911.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081017, intron 42 of 48)	intron (NM_001081017, intron 42 of 48)	77404.0	NM_133364	170952.0	Mm.217019	NM_133364	ENSMUSG00000041669	Prima1	B230212M13Rik|BB120497|PRiMA	proline rich membrane anchor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77772966-4	chr15	77772481	77773481	+	911.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 25 of 40)	G-rich|Low_complexity|Low_complexity	-15971.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-62231233-4	chr14	62230734	62231734	+	911.645874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61745.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80370193-4	chr7	80369637	80370637	+	911.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172903, intron 2 of 23)	RSINE1|SINE|B4	1238.0	NM_172903	140481.0	Mm.269245	NM_172903	ENSMUSG00000038886	Man2a2	1700052O22Rik|4931438M07Rik|AI480988|MX|Man IIx	mannosidase 2, alpha 2	protein-coding	31.0	89.0	60.0	24.5	45.5	39.5
Merged-chr14-105732767-8	chr14	105732285	105733285	+	911.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109015.0	NR_105814	102465207.0		NR_105814	ENSMUSG00000098780	Mir6390	Gm27562|mmu-mir-6390	microRNA 6390	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4572054-4	chr12	4571537	4572537	+	911.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20971.0	NM_001198969	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-96730568-4	chr7	96730066	96731066	+	911.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 9 of 32)	intron (NM_011858, intron 9 of 32)	70983.0	NR_045874	791381.0	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	-	predicted gene 15413	ncRNA	0.5	0.0	1.5	0.0	0.5	0.0
Merged-chr6-22409077-4	chr6	22408603	22409603	+	911.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53022.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-84454274-4	chr14	84453765	84454765	+	911.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013753, intron 1 of 3)	intron (NM_001013753, intron 1 of 3)	10702.0	NM_001013753	219228.0	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-74277879-3	chr5	74277372	74278372	+	911.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114660, intron 5 of 8)	MLT1I|LTR|ERVL-MaLR	82546.0	NM_026878	68939.0	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	0.0	2.0	0.5	0.0	2.0	0.5
Merged-chr9-32159401-3	chr9	32158925	32159925	+	911.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195632, intron 4 of 21)	intron (NM_001195632, intron 4 of 21)	43289.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149650543-6	chr4	149649939	149650939	+	911.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164052, exon 22 of 22)	3' UTR (NM_001164052, exon 22 of 22)	5128.0	NR_105990	102465983.0		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-121509773-4	chr2	121509272	121510272	+	911.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290987, intron 1 of 11)	intron (NM_001290987, intron 1 of 11)	3049.0	NM_001290986	241627.0	Mm.293284	NM_030234	ENSMUSG00000027242	Wdr76	5830411K18Rik|6030457D09|AA517836	WD repeat domain 76	protein-coding	8.5	7.5	17.0	17.0	17.5	17.5
Merged-chr16-45786897-4	chr16	45786410	45787410	+	911.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357078, intron 5 of 16)	intron (NM_001357078, intron 5 of 16)	-43955.0	NM_172511	213012.0	Mm.247453	NM_172511	ENSMUSG00000033157	Abhd10	-	abhydrolase domain containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-61709986-2	chr1	61709486	61710486	+	911.5833130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081050, intron 1 of 22)	intron (NM_001081050, intron 1 of 22)	71162.0	NM_001081050	72823.0	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	0.5	0.0	0.0	1.0	1.5	0.0
Merged-chr2-85560413-4	chr2	85559887	85560887	+	911.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18828.0	NM_146437	258429.0	Mm.377497	NM_146437	ENSMUSG00000111179	Olfr996	MOR175-4	olfactory receptor 996	protein-coding	8.0	7.5	4.0	8.0	7.5	4.0
Merged-chr3-105722999-3	chr3	105722509	105723509	+	911.5714109999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17551.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	28.5	26.0	28.0	12.5	19.5	13.5
Merged-chr6-129727457-3	chr6	129726961	129727961	+	911.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-10329.0	NM_001012520	503550.0	Mm.376476	NM_001012520	ENSMUSG00000067610	Klri1	-	killer cell lectin-like receptor family I member 1	protein-coding	16.0	7.5	12.0	8.5	19.5	6.5
Merged-chr2-91954008-3	chr2	91953441	91954441	+	911.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138306, intron 1 of 30)	intron (NM_138306, intron 1 of 30)	-3593.0	NM_001166597	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	17.5	32.0	7.5	8.5	14.5	11.0
Merged-chr19-37554168-4	chr19	37553720	37554720	+	911.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175353, intron 1 of 21)	intron (NM_175353, intron 1 of 21)	3802.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	21.5	57.0	57.0	31.5	101.0	52.0
Merged-chr4-59044967-4	chr4	59044478	59045478	+	911.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	9822.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	1.5	7.0	6.0	5.0	7.0	3.5
Merged-chr2-83625826-4	chr2	83625323	83626323	+	911.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18755.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-25461311-4	chr18	25460800	25461800	+	911.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033532, intron 10 of 10)	intron (NM_001033532, intron 10 of 10)	218448.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87908147-2	chr3	87907647	87908647	+	911.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331051, intron 1 of 6)	intron (NM_001331051, intron 1 of 6)	1297.0	NM_001331052	15191.0	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	18.5	28.5	15.0	15.0	41.0	32.5
Merged-chr9-75050180-2	chr9	75049680	75050680	+	911.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357880, intron 2 of 3)	intron (NM_001357880, intron 2 of 3)	12448.0	NM_021548	59046.0	Mm.247837	NM_021548	ENSMUSG00000007656	Arpp19	19kDa|2700024H10Rik|ARPP-19|AW559096|Arpp12	cAMP-regulated phosphoprotein 19	protein-coding	1.5	0.0	0.0	0.0	0.0	0.0
Merged-chr17-81697927-2	chr17	81697427	81698427	+	911.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	Charlie1b|DNA|hAT-Charlie	40460.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111737224-2	chr12	111736724	111737724	+	911.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163388, intron 4 of 5)	B2_Mm1t|SINE|B2	-21625.0	NM_001361612	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81626718-2	chr10	81626218	81627218	+	911.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181586, intron 1 of 7)	L2a|LINE|L2	604.0	NM_001163430	50721.0	Mm.25643	NM_181586	ENSMUSG00000034748	Sirt6	2810449N18Rik|AI043036|Sir2l6	sirtuin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72254493-2	chr5	72253993	72254993	+	911.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 9 of 22)	intron (NR_003966, intron 9 of 22)	51150.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79856646-2	chr10	79856146	79857146	+	911.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077363, intron 2 of 13)	intron (NM_001077363, intron 2 of 13)	-1675.0	NR_029447	414101.0	Mm.401339	NR_029447	ENSMUSG00000091994	E130317F20Rik	-	RIKEN cDNA E130317F20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153401956-4	chr1	153401463	153402463	+	911.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12270.0	NR_033736	626058.0	Mm.31556	NM_001177359		E330020D12Rik	EG626058|F430003O07Rik|Gm6648	Riken cDNA E330020D12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-14738268-2	chr9	14737768	14738768	+	911.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177905, intron 2 of 18)	B2_Mm2|SINE|B2	2465.0	NM_177905	330890.0	Mm.334969	NM_177905	ENSMUSG00000036912	Piwil4	9230101H05Rik|Miwi2	piwi-like RNA-mediated gene silencing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118675310-2	chr9	118674751	118675751	+	911.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 11 of 27)	RMER1B|Other|Other	-36441.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	13.0	79.5	37.5	19.0	41.5	31.0
Merged-chr2-167113000-2	chr2	167112500	167113500	+	911.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008420, intron 1 of 1)	intron (NM_008420, intron 1 of 1)	47707.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120684797-2	chr7	120684297	120685297	+	911.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164580, intron 1 of 2)	intron (NM_001164580, intron 1 of 2)	7177.0	NM_001164580	233812.0	Mm.276479	NM_001164580	ENSMUSG00000046096	Mosmo	Atthog	modulator of smoothened	protein-coding	9.0	5.5	2.0	9.0	5.5	2.0
Merged-chr10-86827164-4	chr10	86826656	86827656	+	911.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175331, intron 12 of 13)	MIRb|SINE|MIR	48151.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106341481-4	chr9	106340983	106341983	+	911.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 10 of 10)	intron (NM_027354, intron 10 of 10)	-27149.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	4.0	25.0	15.5	10.0	36.0	31.0
Merged-chr2-58933550-3	chr2	58933058	58934058	+	911.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 10 of 13)	intron (NM_001362394, intron 10 of 13)	178374.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80175724-3	chr10	80175263	80176263	+	911.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027207)	TTS (NM_027207)	2819.0	NM_027207	69770.0	Mm.302754	NM_027207	ENSMUSG00000035595	1600002K03Rik	-	RIKEN cDNA 1600002K03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-118633598-2	chr5	118633098	118634098	+	911.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	72879.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.5	7.5	7.0	2.5	10.0	8.0
Merged-chr15-100462742-2	chr15	100462242	100463242	+	911.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6269.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	28.5	34.0	18.5	9.0	30.0	9.5
Merged-chr2-120347072-2	chr2	120346572	120347572	+	911.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_147153, intron 2 of 25)	intron (NM_147153, intron 2 of 25)	6061.0	NR_027618	269338.0	Mm.246131	NM_147153	ENSMUSG00000027291	Vps39	A230065P22Rik|AW743070|Vam6|Vam6P|mVam6	VPS39 HOPS complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-43555244-4	chr2	43554754	43555754	+	911.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289594)	promoter-TSS (NM_001289594)	-71.0	NM_001289593	70789.0	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-143888682-1	chr1	143888182	143889182	+	911.5	f0_balb.idr	Intergenic	Intergenic	111404.0	NM_019562	56207.0	Mm.261004	NM_019562	ENSMUSG00000018189	Uchl5	5830413B11Rik|Uch37	ubiquitin carboxyl-terminal esterase L5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38943456-3	chr18	38942962	38943962	+	911.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033789, intron 4 of 4)	intron (NM_001033789, intron 4 of 4)	-24763.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	2.0	5.5	3.0	2.0	6.5	3.0
Merged-chr18-24244449-2	chr18	24243949	24244949	+	911.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361200, intron 3 of 12)	intron (NM_001361200, intron 3 of 12)	38455.0	NM_001160404	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120083933-2	chr6	120083433	120084433	+	911.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9447.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-3192077-2	chr6	3191577	3192577	+	911.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96442.0	NR_036696	667335.0	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76180216-2	chr14	76179716	76180716	+	911.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	69325.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86571264-2	chr11	86570764	86571764	+	911.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12894.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136600234-2	chr1	136599734	136600734	+	911.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24667.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52390530-2	chr3	52390030	52391030	+	911.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	122193.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-83921419-4	chr10	83920934	83921934	+	911.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	179263.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124532725-3	chr5	124532212	124533212	+	911.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1321.0	NM_021430	75695.0	Mm.41180	NM_021430	ENSMUSG00000029392	Rilpl1	2900002H16Rik|6330559I19Rik|GOSPEL	Rab interacting lysosomal protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-20807512-2	chr15	20807012	20808012	+	911.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140762.0	NM_022816	64833.0	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21616031-4	chr16	21615556	21616556	+	911.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 45 of 46)	intron (NM_001081366, intron 45 of 46)	78609.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152524533-2	chr1	152524033	152525033	+	911.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 16 of 17)	intron (NM_016846, intron 16 of 17)	100684.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45245686-4	chr2	45245186	45246186	+	911.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-128244.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106428854-4	chr9	106428391	106429391	+	911.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324534)	promoter-TSS (NM_001324534)	-520.0	NM_001324533	19944.0	Mm.288696	NM_009082	ENSMUSG00000048758	Rpl29	Rpl43	ribosomal protein L29	protein-coding	125.5	225.5	198.0	91.0	229.0	145.5
Merged-chr17-25135795-2	chr17	25135306	25136306	+	911.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317404)	promoter-TSS (NM_001317404)	-825.0	NM_001317404	26373.0	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	11.5	28.5	26.5	10.0	8.0	13.0
Merged-chr4-74280199-2	chr4	74279699	74280699	+	911.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356561, intron 2 of 20)	MTE2b|LTR|ERVL-MaLR	28320.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116040262-3	chr7	116039744	116040744	+	911.488892	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1500.0	NM_001025559	20679.0	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50763343-4	chr16	50762854	50763854	+	911.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-20055.0	NR_131006	78639.0	Mm.160109	NR_131005	ENSMUSG00000092276	1700116B05Rik	-	RIKEN cDNA 1700116B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-31817624-3	chr11	31817071	31818071	+	911.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_102310)	TTS (NR_102310)	6976.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	9.0	9.0	4.5	20.0	16.5	9.5
Merged-chr12-16877133-8	chr12	16876614	16877614	+	911.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17864.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	96.5	206.0	164.0	125.0	255.5	177.5
Merged-chr16-4939566-3	chr16	4939059	4940059	+	911.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037666)	promoter-TSS (NR_037666)	26.0	NR_037666	100503704.0	Mm.480572	NR_037666	ENSMUSG00000097397	Gm16861	-	predicted gene, 16861	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24519188-3	chr13	24518686	24519686	+	911.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63003.0	NM_001286100	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130491801-4	chr2	130491279	130492279	+	911.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355161, intron 1 of 21)	intron (NM_001355161, intron 1 of 21)	41501.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	204.0	309.5	278.5	270.0	580.5	410.0
Merged-chr16-20620006-4	chr16	20619506	20620506	+	911.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028420, exon 2 of 2)	3' UTR (NM_028420, exon 2 of 2)	1272.0	NM_028420	73047.0	Mm.425977	NM_028420	ENSMUSG00000051146	Camk2n2	2900075A18Rik	calcium/calmodulin-dependent protein kinase II inhibitor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4149536-4	chr19	4149037	4150037	+	911.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011778, exon 2 of 11)	exon (NM_011778, exon 2 of 11)	874.0	NM_011778	23789.0	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97843357-4	chr7	97842854	97843854	+	911.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357363, intron 1 of 14)	intron (NM_001357363, intron 1 of 14)	415.0	NM_011035	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	27.0	39.5	48.0	12.5	38.0	22.5
Merged-chr11-44516450-4	chr11	44515953	44516953	+	911.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2511.0	NM_028862	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21328247-4	chr9	21327753	21328753	+	911.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359227, intron 1 of 22)	intron (NM_001359227, intron 1 of 22)	7534.0	NM_001199186	68682.0	Mm.148425	NM_152808	ENSMUSG00000057193	Slc44a2	1110028E10Rik|CTL2	solute carrier family 44, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45807648-4	chr17	45807135	45808135	+	911.412476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73129.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	0.0	0.0	1.5	0.5	0.0	0.0
Merged-chr1-23257423-3	chr1	23256920	23257920	+	911.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14849.0	NR_029533	387225.0		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	15.0	19.0	16.5	17.5	46.0	24.0
Merged-chr11-117057113-2	chr11	117056613	117057613	+	911.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19670.0	NR_027059	76972.0	Mm.309167	NR_027059	ENSMUSG00000086859	Snhg20	2810008D09Rik	small nucleolar RNA host gene 20	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-63920746-3	chr11	63920270	63921270	+	911.388855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018805, intron 1 of 1)	CpG	1514.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	0.0	2.5	2.0	0.0	0.0	0.0
Merged-chr1-180811250-4	chr1	180810732	180811732	+	911.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008210, intron 2 of 3)	intron (NM_008210, intron 2 of 3)	2373.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46375156-4	chr4	46374656	46375656	+	911.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14267.0	NM_029086	74753.0	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-67061669-4	chr1	67061160	67062160	+	911.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22788.0	NM_021295	14768.0	Mm.20522	NM_021295	ENSMUSG00000026000	Lancl1	AW124738|Gpr69|Gpr69a|p40	LanC (bacterial lantibiotic synthetase component C)-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75609689-4	chr2	75609209	75610209	+	911.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49550.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-59239591-4	chr19	59239059	59240059	+	911.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19911.0	NM_207261	332396.0	Mm.329947	NM_207261	ENSMUSG00000040901	Kcnk18	Gm781|Tresk|Tresk-2|Trik	potassium channel, subfamily K, member 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-61017693-4	chr19	61017211	61018211	+	911.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 2 of 15)	intron (NM_018869, intron 2 of 15)	123129.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	6.0	27.5	0.5	9.0	26.0	16.0
Merged-chr10-21611221-4	chr10	21610725	21611725	+	911.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027968, intron 2 of 2)	intron (NR_027968, intron 2 of 2)	18080.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21043086-4	chr5	21042607	21043607	+	911.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011203, intron 1 of 17)	ORR1F|LTR|ERVL-MaLR	-7860.0	NM_001356590	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62502302-3	chr10	62501871	62502871	+	911.351868	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 2 of 3)	intron (NM_001358965, intron 2 of 3)	5386.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145794688-4	chr2	145794193	145795193	+	911.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	8577.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115574668-2	chr11	115574157	115575157	+	911.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002929, intron 7 of 18)	MTC|LTR|ERVL-MaLR	10213.0	NM_001002929	445007.0	Mm.4379	NM_001002929	ENSMUSG00000020739	Nup85	Pcnt1|frount	nucleoporin 85	protein-coding	2.0	9.0	2.0	6.0	8.5	3.0
Merged-chr5-34542427-2	chr5	34541927	34542927	+	911.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145858)	promoter-TSS (NM_001145858)	-938.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83145621-3	chr8	83145121	83146121	+	911.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-19731.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	5.0	42.5	27.5	18.5	61.0	27.0
Merged-chr4-88794482-3	chr4	88793989	88794989	+	911.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161609).6	promoter-TSS (NM_001161609).6	2.0	NM_001161609	545654.0	Mm.478784	NM_001161609	ENSMUSG00000095101	Gm13285	limitin	predicted gene 13285	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78607037-2	chr15	78606537	78607537	+	911.3333130000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_028195, exon 5 of 13)	exon (NM_028195, exon 5 of 13)	9990.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	10.0	28.0	55.0	23.0	35.5	32.0
Merged-chr2-118779697-4	chr2	118779212	118780212	+	911.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170593)	promoter-TSS (NM_170593)	-7.0	NM_170593	214240.0	Mm.221499	NM_170593	ENSMUSG00000040035	Disp2	AI840597|B230210L08Rik|DispB|mKIAA1742	dispatched RND tramsporter family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66136196-3	chr5	66135774	66136774	+	911.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	14704.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	14.0	23.5	19.5	12.5	12.5	12.5
Merged-chr11-118254359-4	chr11	118253898	118254898	+	911.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5806.0	NM_011180	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-35126815-4	chr19	35126303	35127303	+	911.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161407.0	NR_035473	100316775.0		NR_035473	ENSMUSG00000089151	Mir1950	mmu-mir-1950	microRNA 1950	ncRNA	0.0	2.0	2.0	4.0	1.0	2.5
Merged-chr1-106561596-4	chr1	106561086	106562086	+	911.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	-14955.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96163964-4	chr10	96163439	96164439	+	911.30835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62268.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-134689276-4	chr7	134688771	134689771	+	911.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033420, intron 1 of 51)	intron (NM_001033420, intron 1 of 51)	18584.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	11.5	38.5	20.0	9.0	27.5	16.5
Merged-chr1-171118430-4	chr1	171117935	171118935	+	911.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3226.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-59895592-4	chr1	59895088	59896088	+	911.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17418.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr5-111035653-4	chr5	111035164	111036164	+	911.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	31520.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	0.0	6.0	18.0	3.5	21.0	5.5
Merged-chr8-94330907-4	chr8	94330376	94331376	+	911.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019415, intron 2 of 24)	intron (NM_019415, intron 2 of 24)	1668.0	NM_001205311	20497.0	Mm.25804	NM_019415	ENSMUSG00000031766	Slc12a3	AI035291|NCC|NCCT|TSC	solute carrier family 12, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-142077584-4	chr4	142077070	142078070	+	911.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-6728.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38911371-4	chr6	38910879	38911879	+	911.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7607.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-68837855-3	chr8	68837344	68838344	+	911.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42711.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.0	14.5	2.0	9.0	8.5	3.5
Merged-chr1-85962303-3	chr1	85961803	85962803	+	911.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-1248.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120061932-4	chr4	120061417	120062417	+	911.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-99289.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-103719953-4	chr5	103719451	103720451	+	911.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34211.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-135166848-4	chr6	135166381	135167381	+	911.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013546, intron 1 of 3)	intron (NM_013546, intron 1 of 3)	1334.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	37.0	31.0	47.0	53.5	67.0	64.5
Merged-chr9-57638870-2	chr9	57638370	57639370	+	911.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 2 of 14)	intron (NM_001304761, intron 2 of 14)	6783.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118609497-4	chr9	118609014	118610014	+	911.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	2805.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155533637-2	chr2	155533145	155534145	+	911.25	f0_balb.idr|f1_balb.idr	intron (NM_019811, intron 2 of 17)	Charlie2a|DNA|hAT-Charlie	15602.0	NM_019811	60525.0	Mm.255026	NM_019811	ENSMUSG00000027605	Acss2	1110017C11Rik|ACAS|Acas1|Acas2|AceCS1|Acs1	acyl-CoA synthetase short-chain family member 2	protein-coding	10.0	4.0	2.5	45.5	108.0	50.5
Merged-chr3-65667730-2	chr3	65667214	65668214	+	911.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037923, intron 1 of 2)	intron (NM_001037923, intron 1 of 2)	1486.0	NM_001166659	624866.0	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding	13.5	12.5	3.5	6.0	6.0	5.0
Merged-chr11-83221594-4	chr11	83221090	83222090	+	911.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1986.0	NR_015519	100043636.0	Mm.295569	NR_015519	ENSMUSG00000087107	AI662270	AW496474	expressed sequence AI662270	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-192939206-4	chr1	192938714	192939714	+	911.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301370, intron 4 of 8)	GA-rich|Low_complexity|Low_complexity	-83462.0	NM_198247	214791.0	Mm.22806	NM_198247	ENSMUSG00000016262	Sertad4	4833404A09|C130018M11Rik	SERTA domain containing 4	protein-coding	3.0	8.0	6.5	0.0	3.0	5.5
Merged-chr9-121839445-4	chr9	121838941	121839941	+	911.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028384)	promoter-TSS (NM_028384)	20.0	NM_028384	100502861.0	Mm.335550	NM_028384	ENSMUSG00000079235	Ccdc13	2900041A11Rik|Gm188	coiled-coil domain containing 13	protein-coding	12.5	11.5	5.0	0.5	0.0	1.0
Merged-chr4-151859407-3	chr4	151858894	151859894	+	911.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 1 of 23)	intron (NM_001081557, intron 1 of 23)	2374.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-17838643-3	chr13	17838144	17839144	+	911.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33547.0	NM_027118	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-18431050-3	chr10	18430557	18431557	+	911.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173390, intron 1 of 6)	intron (NM_173390, intron 1 of 6)	23382.0	NM_173390	215819.0	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-36952396-7	chr8	36951867	36952867	+	911.214294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001194940)	promoter-TSS (NM_001194940)	75.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	25.5	63.0	46.0	16.0	49.0	32.0
Merged-chr10-57571449-4	chr10	57570936	57571936	+	911.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38907.0	NM_019760	56442.0	Mm.29344	NM_019760	ENSMUSG00000019877	Serinc1	1500011D18Rik|AI315070|AIGP-2|TMS-2|Tde1l|Tde2|Tms2|mKIAA1253	serine incorporator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24686861-4	chr5	24686306	24687306	+	911.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305264, intron 1 of 14)	B1_Mur2|SINE|Alu	991.0	NM_001305264	53312.0	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-113632822-4	chr8	113632328	113633328	+	911.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2758.0	NM_001048143	270096.0	Mm.74689	NM_173015	ENSMUSG00000078908	Mon1b	5031407H10|5033413H12Rik	MON1 homolog B, secretory traffciking associated	protein-coding	0.0	8.0	0.0	0.0	0.0	5.0
Merged-chr17-50880202-4	chr17	50879705	50880705	+	911.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 13 of 21)	(CAAAAA)n|Simple_repeat|Simple_repeat	181524.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101805854-4	chr13	101805349	101806349	+	911.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37632.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-63493320-4	chr17	63492819	63493819	+	911.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 1 of 8)	intron (NM_015794, intron 1 of 8)	7261.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-101561426-3	chr14	101560923	101561923	+	911.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	47768.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-67421371-4	chr13	67420883	67421883	+	911.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177811)	promoter-TSS (NM_177811)	35.0	NM_177811	328274.0	Mm.222470	NM_177811	ENSMUSG00000055560	Zfp459	9930025G17Rik|Rslcan-14	zinc finger protein 459	protein-coding	1.5	8.0	5.0	22.0	21.0	25.5
Merged-chr10-78312099-3	chr10	78311605	78312605	+	911.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053014, intron 2 of 9)	intron (NM_053014, intron 2 of 9)	28102.0	NR_106119	102465765.0		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-116893982-3	chr10	116893482	116894482	+	911.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033333, intron 1 of 24)	intron (NM_001033333, intron 1 of 24)	2897.0	NM_001033333	237558.0	Mm.336386	NM_001033333	ENSMUSG00000034057	Myrfl	Gm239	myelin regulatory factor-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136687642-3	chr6	136687137	136688137	+	911.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25744.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	2.0	1.0	0.0	4.0	11.0	6.5
Merged-chr7-34958001-4	chr7	34957493	34958493	+	911.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 7 of 14)	intron (NM_008820, intron 7 of 14)	45586.0	NM_008820	18624.0	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	4.5	0.5	3.5	5.0	4.5	7.0
Merged-chr2-72373802-4	chr2	72373293	72374293	+	911.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 7 of 19)	intron (NM_023057, intron 7 of 19)	88092.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97929108-4	chr3	97928622	97929622	+	911.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1051.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144695470-4	chr3	144694984	144695984	+	911.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 9 of 10)	intron (NM_001282037, intron 9 of 10)	24851.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146607377-4	chr3	146606871	146607871	+	911.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009474, intron 1 of 7)	intron (NM_009474, intron 1 of 7)	8227.0	NM_019957	56629.0	Mm.25853	NM_019957	ENSMUSG00000028185	Dnase2b	AI526873|Dlad|DnaseIIb	deoxyribonuclease II beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62820373-3	chr11	62819869	62820869	+	911.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_053169, exon 1 of 6)	5' UTR (NM_053169, exon 1 of 6)	116.0	NM_053169	94092.0	Mm.117087	NM_053169	ENSMUSG00000047821	Trim16	9130006M08Rik|AI482483|EBBP	tripartite motif-containing 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-8778143-3	chr6	8777615	8778615	+	911.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010492, exon 1 of 14)	5' UTR (NM_010492, exon 1 of 14)	369.0	NM_010492	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50042802-3	chr11	50042307	50043307	+	911.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 1 of 7)	intron (NM_001290750, intron 1 of 7)	17476.0	NM_001290750	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115081093-4	chr11	115080614	115081614	+	911.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-10317.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44735352-2	chr9	44734852	44735852	+	911.099976	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153537)	promoter-TSS (NM_153537)	-154.0	NM_153537	102693.0	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-53787539-4	chr1	53787045	53788045	+	911.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-2330.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86822996-4	chr11	86822506	86823506	+	911.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-15346.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39636362-3	chr1	39635857	39636857	+	911.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170597, intron 2 of 3)	intron (NM_170597, intron 2 of 3)	14825.0	NM_170597	263764.0	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49946952-4	chr16	49946444	49947444	+	911.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8886.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170101331-4	chr2	170100813	170101813	+	911.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29907.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	3.5	0.0	0.5	0.0	1.0	0.0
Merged-chr1-160882212-3	chr1	160881718	160882718	+	911.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-24193.0	NM_001024952	381305.0	Mm.329667	NM_001024952	ENSMUSG00000040423	Rc3h1	5730557L09Rik|Gm551|N28103|mKIAA2025	RING CCCH (C3H) domains 1	protein-coding	6.5	4.0	7.0	4.0	5.0	8.0
Merged-chr5-114175793-4	chr5	114175315	114176315	+	911.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133904, intron 1 of 51)	intron (NM_133904, intron 1 of 51)	10297.0	NM_133904	100705.0	Mm.81793	NM_133904	ENSMUSG00000042010	Acacb	AI597064|AW743042|Acc2|Accb	acetyl-Coenzyme A carboxylase beta	protein-coding	0.0	0.0	0.0	9.0	20.0	19.5
Merged-chr8-26380854-3	chr8	26380361	26381361	+	911.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	222692.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	0.5	3.5	0.5	3.0	2.0	1.5
Merged-chr7-89441320-3	chr7	89440813	89441813	+	911.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15007.0	NR_102276	101521.0	Mm.26902	NR_102276	ENSMUSG00000109311	AI314278	-	expressed sequence AI314278	ncRNA	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr1-93011122-7	chr1	93010594	93011594	+	911.0476070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159658, intron 2 of 2)	MER115|DNA|hAT-Tip100	4760.0	NM_177587	208760.0	Mm.235537	NM_177587	ENSMUSG00000045091	Aqp12	AB084104|mAQP12	aquaporin 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-6983043-4	chr10	6982555	6983555	+	911.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039652, intron 4 of 5)	intron (NM_001039652, intron 4 of 5)	-2590.0	NM_001170801	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167388584-4	chr2	167388097	167389097	+	911.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33113.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41825737-3	chr13	41825239	41826239	+	911.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145875, intron 2 of 6)	intron (NM_001145875, intron 2 of 6)	21749.0	NM_175417	109254.0	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46772998-1	chr8	46772498	46773498	+	911.0	f0_balb.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	33253.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-42490928-2	chr7	42490428	42491428	+	911.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001309388, intron 2 of 6)	RLTR14|LTR|ERV1	14825.0	NM_001309389	434178.0	Mm.333810	NM_001309388	ENSMUSG00000092416	Zfp141	-	zinc finger protein 141	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35392369-4	chr12	35391873	35392873	+	911.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	142616.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	1.5	10.5	8.5	12.0	14.0	8.5
Merged-chr15-78185075-3	chr15	78184539	78185539	+	911.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-10931.0	NM_025931	67042.0	Mm.30191	NM_025931	ENSMUSG00000016637	Ift27	2600013G09Rik|Rabl4	intraflagellar transport 27	protein-coding	8.0	0.0	2.0	3.0	2.5	0.0
Merged-chr6-82995285-2	chr6	82994785	82995785	+	911.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 4 of 9)	intron (NM_033079, intron 4 of 9)	38186.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	5.0	36.0	9.0	8.0	34.0	12.0
Merged-chr1-171037109-3	chr1	171036581	171037581	+	911.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Asp-GAY|tRNA|tRNA	18155.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133632216-3	chr4	133631720	133632720	+	911.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017968, intron 1 of 7)	intron (NM_001017968, intron 1 of 7)	1209.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	15.5	37.0	18.0	22.0	30.0	50.0
Merged-chr12-14904552-2	chr12	14904052	14905052	+	911.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	145837.0	NR_045960	73972.0	Mm.107680	NR_045960	ENSMUSG00000113644	4930448C13Rik	-	RIKEN cDNA 4930448C13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116121879-1	chr9	116121379	116122379	+	911.0	f1_balb.idr	intron (NM_029575, intron 3 of 6)	intron (NM_029575, intron 3 of 6)	53484.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.0	4.0	4.0	0.0	0.5	1.5
Merged-chr17-27935737-2	chr17	27935237	27936237	+	911.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	(TG)n|Simple_repeat|Simple_repeat	26431.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	6.0	32.5	17.0	9.0	19.5	51.5
Merged-chr1-91086324-3	chr1	91085794	91086794	+	911.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 7 of 22)	intron (NM_008515, intron 7 of 22)	32850.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87454484-2	chr11	87453984	87454984	+	911.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	PB1D10|SINE|Alu	26893.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-113636380-3	chr8	113635886	113636886	+	911.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001048143, intron 2 of 5)	intron (NM_001048143, intron 2 of 5)	587.0	NM_173015	270096.0	Mm.74689	NM_173015	ENSMUSG00000078908	Mon1b	5031407H10|5033413H12Rik	MON1 homolog B, secretory traffciking associated	protein-coding	14.0	33.0	28.0	9.5	35.0	19.5
Merged-chr14-45662947-1	chr14	45662447	45663447	+	911.0	f1_c57bl6.idr	Intergenic	Intergenic	-4804.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	18.5	57.0	32.0	12.0	12.0	22.0
Merged-chr4-53086851-2	chr4	53086351	53087351	+	911.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 11 of 49)	intron (NM_013454, intron 11 of 49)	73044.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134509854-2	chr5	134509354	134510354	+	911.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009990, intron 8 of 16)	intron (NM_009990, intron 8 of 16)	42580.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119480958-2	chr11	119480458	119481458	+	911.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153849, intron 2 of 3)	intron (NR_153849, intron 2 of 3)	10277.0	NR_153849	78439.0	Mm.440446	NR_153849	ENSMUSG00000109408	A930037H05Rik	Gm44935	RIKEN cDNA A930037H05 gene	ncRNA	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr5-123996293-2	chr5	123995793	123996793	+	911.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105999)	promoter-TSS (NR_105999)	-559.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	1.0	0.0	0.0	0.0	1.0	0.0
Merged-chr5-120619787-2	chr5	120619287	120620287	+	911.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028041, exon 7 of 20)	exon (NM_028041, exon 7 of 20)	6657.0	NM_028041	71990.0	Mm.24495	NM_028041	ENSMUSG00000029599	Ddx54	2410015A15Rik|AI414901|DP97	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35824554-4	chr17	35823985	35824985	+	911.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008027, intron 4 of 12)	intron (NM_008027, intron 4 of 12)	1128.0	NM_008027	14251.0	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	7.0	6.5	1.5	1.0	0.5	2.0
Merged-chr11-119302037-2	chr11	119301537	119302537	+	911.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1994.0	NM_138669	192170.0	Mm.197555	NM_138669	ENSMUSG00000025580	Eif4a3	2400003O03Rik|Ddx48|eIF4A-III|mKIAA0111	eukaryotic translation initiation factor 4A3	protein-coding	0.0	0.0	0.0	1.5	0.0	0.0
Merged-chr9-107292998-2	chr9	107292498	107293498	+	911.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3121.0	NM_178907	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	5.0	4.0	1.0	0.0	0.0	1.0
Merged-chr4-152285705-2	chr4	152285205	152286205	+	911.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008237)	TTS (NM_008237)	5957.0	NM_008237	15207.0	Mm.3516	NM_008237	ENSMUSG00000028946	Hes3	Hes-3|bHLHb43	hes family bHLH transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77968375-2	chr10	77967875	77968875	+	911.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 2 of 33)	intron (NM_138301, intron 2 of 33)	1497.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35941739-2	chr18	35941239	35942239	+	911.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23091.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46830773-2	chr8	46830273	46831273	+	911.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008391, intron 6 of 8)	intron (NM_008391, intron 6 of 8)	91028.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47841364-3	chr19	47840861	47841861	+	911.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-4000.0	NM_027559	100048534.0	Mm.29457	NM_027559	ENSMUSG00000044948	Cfap43	4632415N18Rik|4930428C11Rik|4930463G05Rik|AI429486|D19Ertd652e|Wdr96	cilia and flagella associated protein 43	protein-coding	2.0	5.5	0.5	5.5	3.5	5.0
Merged-chr7-143628732-3	chr7	143628228	143629228	+	911.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175649)	promoter-TSS (NM_175649)	658.0	NR_153817	414103.0	Mm.446579	NR_153817		E230032D23Rik	-	RIKEN cDNA E230032D23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105299159-2	chr8	105298659	105299659	+	911.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_148952, intron 4 of 9)	intron (NM_148952, intron 4 of 9)	1496.0	NM_148952	104394.0	Mm.34554	NM_148952	ENSMUSG00000014859	E2f4	2010111M04Rik|AI427446	E2F transcription factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-94078497-4	chr1	94077992	94078992	+	911.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	-25939.0	NM_008798	18566.0	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-91082604-2	chr8	91082114	91083114	+	911.0	f0_balb.idr|f1_balb.idr	intron (NM_001282000, intron 4 of 20)	intron (NM_001282000, intron 4 of 20)	12557.0	NM_001282000	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	14.5	47.0	26.5	44.0	75.5	72.0
Merged-chr2-153143079-2	chr2	153142579	153143579	+	911.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 10 of 12)	intron (NM_001172117, intron 10 of 12)	-18222.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-80371656-3	chr1	80371163	80372163	+	911.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-30973.0	NM_016716	26554.0	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88232011-2	chr1	88231511	88232511	+	911.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 5 of 41)	intron (NM_001281466, intron 5 of 41)	4991.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138107892-2	chr4	138107386	138108386	+	911.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355700, intron 7 of 30)	intron (NM_001355700, intron 7 of 30)	30632.0	NR_126429	73563.0	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	2.0	0.0	5.0	3.5	3.0	3.0
Merged-chr9-113910065-1	chr9	113909565	113910565	+	911.0	f1_c57bl6.idr	intron (NM_001286600, intron 32 of 34)	B4|SINE|B4	-20869.0	NM_001083319	22221.0	Mm.28052	NM_013699	ENSMUSG00000009741	Ubp1	Cp2b|LBP-1a|LBP-1b|NF2d9	upstream binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46198229-3	chr18	46197759	46198759	+	911.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178872, intron 1 of 9)	CpG	559.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	0.5	4.5	8.0	0.0	2.5	2.5
Merged-chr10-17576059-4	chr10	17575560	17576560	+	911.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147168.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6892778-2	chr19	6892278	6893278	+	911.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16920.0	NM_001166370	67674.0	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-71876286-3	chr7	71875784	71876784	+	911.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33411.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	0.0	2.5	0.0	5.0	6.0	6.5
Merged-chr8-93975168-2	chr8	93974668	93975668	+	911.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011787, intron 11 of 13)	intron (NM_011787, intron 11 of 13)	37472.0	NM_011787	23802.0	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125383548-12	chr5	125383042	125384042	+	910.99585	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6475.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	13.5	5.0	16.0	11.0	11.5	11.5
Merged-chr19-44245957-3	chr19	44245466	44246466	+	910.9722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42678.0	NM_024450	30049.0	Mm.480594	NM_024450	ENSMUSG00000025202	Scd3	4930513N16Rik	stearoyl-coenzyme A desaturase 3	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr1-171915881-5	chr1	171915436	171916436	+	910.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151536, intron 1 of 2)	RMER15-int|LTR|ERVL	-1526.0	NM_030710	30925.0	Mm.486404	NM_030710	ENSMUSG00000015314	Slamf6	KAL1|KAL1b|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding	1.0	11.5	12.0	2.0	0.0	0.0
Merged-chr11-103102180-4	chr11	103101661	103102661	+	910.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152813)	promoter-TSS (NM_152813)	473.0	NM_025988	67131.0	Mm.390367	NM_025988	ENSMUSG00000056938	Acbd4	2010009P05Rik|2010015A21Rik|AI849317	acyl-Coenzyme A binding domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-42373074-4	chr6	42372487	42373487	+	910.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023580, intron 1 of 17)	intron (NM_023580, intron 1 of 17)	281.0	NM_023580	13835.0	Mm.133330	NM_023580	ENSMUSG00000029859	Epha1	5730453L17Rik|AL033318|Eph|Esk	Eph receptor A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32259267-4	chr19	32258764	32259764	+	910.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 3 of 9)	intron (NM_144792, intron 3 of 9)	-48251.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-144935429-4	chr5	144934912	144935912	+	910.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038627, intron 1 of 17)	intron (NM_001038627, intron 1 of 17)	30418.0	NM_001038627	75788.0	Mm.27735	NM_029438	ENSMUSG00000038780	Smurf1	4930431E10Rik|mKIAA1625	SMAD specific E3 ubiquitin protein ligase 1	protein-coding	0.0	2.0	4.0	0.0	0.0	0.0
Merged-chr7-98672755-4	chr7	98672249	98673249	+	910.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16180.0	NM_172280	233545.0	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	6.5	16.5	22.5	9.0	11.5	17.0
Merged-chr15-78826765-4	chr15	78826266	78827266	+	910.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15881.0	NM_027219	104445.0	Mm.307488	NM_027219	ENSMUSG00000049521	Cdc42ep1	1810058K22Rik|AA980734|Borg5|CEP1|MSE55	CDC42 effector protein (Rho GTPase binding) 1	protein-coding	0.0	2.5	0.0	0.0	0.0	1.0
Merged-chr13-59975423-3	chr13	59974883	59975883	+	910.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54328.0	NR_046142	328263.0	Mm.123405	NR_046142	ENSMUSG00000114531	A530065N20Rik	A530065N20	RIKEN cDNA A530046M15 gene	ncRNA	2.0	0.5	2.0	4.0	3.0	6.0
Merged-chr4-101741144-3	chr4	101740597	101741597	+	910.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146146, intron 4 of 18)	RMER15|LTR|ERVL	23690.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	147.5	290.0	203.0	94.0	187.0	189.5
Merged-chr1-173694487-4	chr1	173694036	173695036	+	910.8875119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162938, intron 5 of 6)	ERVB2_1-I_MM-int|LTR|ERVK	20856.0	NM_001162938	100033459.0	Mm.303377	NM_001162938	ENSMUSG00000066677	Ifi208	9830148g24rik|E430029J22Rik|NG2creBAC|Pydc3|Pyr-rv1|Tg(Cspg4-cre)1Akik	interferon activated gene 208	protein-coding	12.0	14.0	12.5	4.0	9.5	10.5
Merged-chr2-13785457-4	chr2	13784959	13785959	+	910.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145838, intron 2 of 7)	intron (NM_145838, intron 2 of 7)	8061.0	NM_145838	241230.0	Mm.330004	NM_145838	ENSMUSG00000003418	St8sia6	1700007J08Rik|AI314453|AI875066|ST8SiaVI|Siat8f	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83032893-4	chr6	83032433	83033433	+	910.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001291799, exon 2 of 5)	exon (NM_001291799, exon 2 of 5)	538.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	92.0	154.0	132.5	106.0	228.0	184.0
Merged-chr17-56251197-4	chr17	56250625	56251625	+	910.8511960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CCCCCA)n|Simple_repeat|Simple_repeat	-5668.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30775232-4	chr5	30774735	30775735	+	910.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023047, intron 2 of 12)	(CCCCAG)n|Simple_repeat|Simple_repeat	-39406.0	NM_133350	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46520789-4	chr17	46520340	46521340	+	910.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081335, exon 23 of 41)	exon (NM_001081335, exon 23 of 41)	24051.0	NM_207161	381101.0	Mm.35801	NM_207161	ENSMUSG00000040658	Dnph1	C76683|Rcl	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	protein-coding	6.0	19.5	4.5	6.5	18.5	19.5
Merged-chr17-43572422-2	chr17	43571922	43572922	+	910.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013737, intron 1 of 11)	L2|LINE|L2	3971.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	13.0	17.0	11.5	11.0	39.0	13.0
Merged-chr4-117682155-3	chr4	117681625	117682625	+	910.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023178)	promoter-TSS (NM_023178)	100.0	NM_023178	66233.0	Mm.29142	NM_023178	ENSMUSG00000009640	Dmap1	1500016M21Rik|DNMAP1|DNMTAP1|Dmtap1|mKIAA1425	DNA methyltransferase 1-associated protein 1	protein-coding	1.5	1.0	2.5	3.0	1.5	0.0
Merged-chr8-45875454-4	chr8	45874947	45875947	+	910.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10038.0	NM_016798	53318.0	Mm.282900	NM_016798	ENSMUSG00000031636	Pdlim3	AI463105|ALP|Actn2lp	PDZ and LIM domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36828190-4	chr15	36827692	36828692	+	910.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31263.0	NM_001253806	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38922474-3	chr18	38921975	38922975	+	910.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033789, intron 3 of 4)	intron (NM_001033789, intron 3 of 4)	-3776.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	2.0	1.5	0.0	1.0	3.5	0.0
Merged-chr8-79941197-3	chr8	79940695	79941695	+	910.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116813.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21747583-4	chr19	21747079	21748079	+	910.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30761.0	NM_001033759	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34879098-6	chr19	34878569	34879569	+	910.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001114339, exon 1 of 7)	exon (NM_001114339, exon 1 of 7)	386.0	NM_001114339	75735.0	Mm.24742	NM_023792	ENSMUSG00000033610	Pank1	Pank|Pank1b	pantothenate kinase 1	protein-coding	3.5	6.0	6.0	2.5	7.0	7.0
Merged-chr7-113193228-4	chr7	113192712	113193712	+	910.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14253.0	NM_001243048	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	10.0	19.0	25.5	11.0	19.0	25.5
Merged-chr15-103364419-2	chr15	103363919	103364919	+	910.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001314041, intron 1 of 30)	intron (NM_001314041, intron 1 of 30)	2372.0	NM_010577	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138506836-3	chr1	138506340	138507340	+	910.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 7 of 9)	intron (NM_021605, intron 7 of 9)	112917.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77454008-5	chr11	77453550	77454550	+	910.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001291190, exon 14 of 14)	exon (NM_001291190, exon 14 of 14)	-9863.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-77602776-4	chr16	77602259	77603259	+	910.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3102.0	NR_029728	387246.0		NR_029728	ENSMUSG00000065557	Mirlet7c-1	Mirnlet7c|Mirnlet7c-1|let-7c-1	microRNA let7c-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115711343-4	chr8	115710841	115711841	+	910.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4447.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98673331-4	chr11	98672809	98673809	+	910.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021347, intron 9 of 11)	intron (NM_021347, intron 9 of 11)	8958.0	NM_021347	57911.0	Mm.458085	NM_021347	ENSMUSG00000017204	Gsdma	BB149167|Gsdm|Gsdm1|Gsdma1|H312E	gasdermin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-81014126-7	chr8	81013655	81014655	+	910.785706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027554, exon 1 of 10)	exon (NM_027554, exon 1 of 10)	751.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	28.5	63.0	37.0	26.0	27.0	43.0
Merged-chr5-150097906-3	chr5	150097412	150098412	+	910.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79237.0	NM_001289566	140498.0	Mm.444643	NM_080468	ENSMUSG00000053368	Rxfp2	Gpr106|Great|Lgr8	relaxin/insulin-like family peptide receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-117580911-4	chr6	117580428	117581428	+	910.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	85693.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36473457-4	chr1	36472971	36473971	+	910.7625119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033570, intron 1 of 6)	intron (NM_033570, intron 1 of 6)	1874.0	NM_033570	94220.0	Mm.422638	NM_033570	ENSMUSG00000037408	Cnnm4	5430430O18Rik|Acdp4	cyclin M4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95513473-2	chr9	95512962	95513962	+	910.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1466.0	NM_001357974	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	13.5	15.0	24.5	14.0	11.5	19.0
Merged-chr6-148986154-4	chr6	148985657	148986657	+	910.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39687.0	NM_001361398	56306.0	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Sinhcaf|Tera	family with sequence similarity 60, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42045989-4	chr19	42045481	42046481	+	910.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_020033)	TTS (NM_020033)	130.0	NM_026152	67432.0	Mm.24196	NM_026152	ENSMUSG00000025176	Hoga1	0610010D20Rik|Dhdpsl|Npl2	4-hydroxy-2-oxoglutarate aldolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34091084-2	chr17	34090541	34091541	+	910.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_046183, intron 3 of 4)	intron (NR_046183, intron 3 of 4)	-1338.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	6.5	7.0	9.0	9.5	0.0	2.0
Merged-chr8-104332922-2	chr8	104332422	104333422	+	910.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7672.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85729575-4	chr12	85729079	85730079	+	910.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16960.0	NM_145447	217721.0	Mm.301076	NM_145447	ENSMUSG00000034258	Flvcr2	CCT|Mfsd7c	feline leukemia virus subgroup C cellular receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-34301077-2	chr16	34300577	34301577	+	910.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 9 of 59)	intron (NM_177357, intron 9 of 59)	212950.0	NM_001164268	545156.0	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60762277-2	chr18	60761777	60762777	+	910.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12319.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	11.5	15.5	6.0	10.5	6.0	1.0
Merged-chr2-150918785-2	chr2	150918285	150919285	+	910.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_027014, intron 4 of 6)	intron (NM_027014, intron 4 of 6)	9191.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121451283-4	chr14	121450778	121451778	+	910.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53976.0	NM_053079	56643.0	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	2.0	2.5	0.0	2.5	0.0	5.5
Merged-chr11-46811629-4	chr11	46811116	46812116	+	910.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178759, intron 1 of 8)	intron (NM_178759, intron 1 of 8)	817.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	42.5	103.5	56.0	29.0	104.5	57.5
Merged-chr2-91723561-4	chr2	91723068	91724068	+	910.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6570.0	NM_172669	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	20.5	53.0	39.5	43.0	84.5	68.5
Merged-chr4-95054703-4	chr4	95054188	95055188	+	910.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2466.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	2.0	25.0	9.0	8.0	16.5	11.5
Merged-chr13-54590864-4	chr13	54590356	54591356	+	910.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178605)	promoter-TSS (NM_178605)	625.0	NM_025933	67044.0	Mm.29353	NM_025933	ENSMUSG00000025868	Higd2a	2010110M21Rik|AA690237	HIG1 domain family, member 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125548642-4	chr6	125548142	125549142	+	910.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4306.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19750818-2	chr7	19750318	19751318	+	910.7000119999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1245.0	NM_001159724	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98953830-4	chr7	98953320	98954320	+	910.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 12 of 14)	intron (NM_178635, intron 12 of 14)	114975.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	2.0	3.5	0.5	3.5	0.0	1.0
Merged-chr2-32487355-4	chr2	32486842	32487842	+	910.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-35872.0	NM_146118	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111040035-4	chr12	111039490	111040490	+	910.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198023, exon 2 of 12)	exon (NM_198023, exon 2 of 12)	192.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-104258902-1	chr7	104258402	104259402	+	910.6666869999999	f0_c57.idr	intron (NM_030684, intron 4 of 7)	(TTC)n|Simple_repeat|Simple_repeat	14445.0	NM_030684	94094.0	Mm.326945	NM_030684	ENSMUSG00000056144	Trim34a	Trim34|Trim34-1	tripartite motif-containing 34A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-51150297-4	chr2	51149732	51150732	+	910.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1121.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108568611-3	chr9	108568111	108569111	+	910.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029947)	promoter-TSS (NR_029947)	-166.0	NR_029947	723864.0		NR_029947	ENSMUSG00000065579	Mir425	Mirn425|mmu-mir-425	microRNA 425	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153742022-3	chr2	153741522	153742522	+	910.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007896, intron 1 of 6)	intron (NM_007896, intron 1 of 6)	735.0	NM_007896	13589.0	Mm.143877	NM_007896	ENSMUSG00000027479	Mapre1	5530600P05Rik|AI462499|AI504412|AW260097|BIM1p|D2Ertd459e|Eb1	microtubule-associated protein, RP/EB family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4286324-2	chr19	4285824	4286824	+	910.6666869999999	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_130863, exon 22 of 22)	3' UTR (NM_130863, exon 22 of 22)	-3187.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43038031-2	chr4	43037531	43038531	+	910.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NR_045567, intron 1 of 7)	intron (NR_045567, intron 1 of 7)	2270.0	NM_001253353	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	1.0	2.0	1.0	0.0	0.5	1.0
Merged-chr1-79670972-2	chr1	79670472	79671472	+	910.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_183027, intron 1 of 4)	intron (NM_183027, intron 1 of 4)	1000.0	NM_183027	252903.0	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	0.0	1.0	0.0	4.5	0.0	0.0
Merged-chr10-81139486-2	chr10	81138986	81139986	+	910.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010731, intron 1 of 2)	intron (NM_010731, intron 1 of 2)	3215.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120023960-4	chr6	120023409	120024409	+	910.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198703, intron 1 of 27)	L3|LINE|CR1	10402.0	NR_030487	735290.0		NR_030487	ENSMUSG00000076217	Mir706	Mirn706|mir-706|mmu-mir-706	microRNA 706	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45000994-4	chr13	45000488	45001488	+	910.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025772, intron 1 of 9)	intron (NM_025772, intron 1 of 9)	1108.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	11.0	0.0	2.0	0.0	1.5	6.0
Merged-chr15-97774363-3	chr15	97773840	97774840	+	910.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6674.0	NM_001357630	223864.0	Mm.24028	NM_144850	ENSMUSG00000022469	Rapgef3	2310016P22Rik|9330170P05Rik|Epac|Epac1	Rap guanine nucleotide exchange factor (GEF) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60811458-4	chr18	60810994	60811994	+	910.627808	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_039567)	promoter-TSS (NR_039567)	-582.0	NR_039567	100628611.0		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	6.5	16.0	17.5	7.0	10.0	9.0
Merged-chr1-173682438-4	chr1	173681937	173682937	+	910.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162938, intron 3 of 6)	intron (NM_001162938, intron 3 of 6)	8757.0	NM_001162938	100033459.0	Mm.303377	NM_001162938	ENSMUSG00000066677	Ifi208	9830148g24rik|E430029J22Rik|NG2creBAC|Pydc3|Pyr-rv1|Tg(Cspg4-cre)1Akik	interferon activated gene 208	protein-coding	5.0	12.5	7.0	3.0	4.5	0.0
Merged-chr9-122349333-4	chr9	122348829	122349829	+	910.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2287.0	NR_152865	67469.0	Mm.280254	NM_026179	ENSMUSG00000032540	Abhd5	1300003D03Rik|2010002J10Rik|CDS|CGI-58|IECN5|NCIE2	abhydrolase domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3892123-4	chr12	3891600	3892600	+	910.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 1 of 17)	intron (NM_153743, intron 1 of 17)	356.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63793869-4	chr9	63793396	63794396	+	910.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35902.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110454351-4	chr12	110453861	110454861	+	910.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001135001, intron 2 of 13)	intron (NM_001135001, intron 2 of 13)	7182.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24312348-4	chr10	24311861	24312861	+	910.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88844.0	NM_021509	59012.0	Mm.285934	NM_021509	ENSMUSG00000020000	Moxd1	3230402N08Rik|MNCb-5203	monooxygenase, DBH-like 1	protein-coding	2.0	6.5	0.0	0.5	5.0	0.0
Merged-chr1-88653764-4	chr1	88653256	88654256	+	910.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48435.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30408570-3	chr2	30408062	30409062	+	910.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007760, intron 4 of 13)	intron (NM_007760, intron 4 of 13)	7186.0	NM_007760	12908.0	Mm.20396	NM_007760	ENSMUSG00000026853	Crat	AW107812|CARAT	carnitine acetyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-86885069-6	chr10	86884573	86885573	+	910.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 43 of 68)	intron (NM_138673, intron 43 of 68)	106068.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83640805-3	chr6	83640300	83641300	+	910.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1-int|LTR|ERVL-MaLR	15316.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	6.0	21.5	12.0	6.0	34.0	31.5
Merged-chr7-80090456-2	chr7	80090012	80091012	+	910.5499880000001	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001146000, exon 6 of 6)	3' UTR (NM_001146000, exon 6 of 6)	-15255.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	14.5	0.0	4.0	0.0	4.5	1.5
Merged-chr4-105485379-4	chr4	105484877	105485877	+	910.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	328030.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	37.5	49.0	40.0	9.5	30.5	58.0
Merged-chr6-125162141-4	chr6	125161655	125162655	+	910.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001302779)	TTS (NM_001302779)	3618.0	NM_008084	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	2.0	0.0	0.5	0.0	6.0	1.0
Merged-chr5-32935775-4	chr5	32935325	32936325	+	910.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360014, intron 24 of 40)	intron (NM_001360014, intron 24 of 40)	72104.0	NM_001170567	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	69.0	84.5	102.5	40.5	66.0	29.0
Merged-chr12-76583046-3	chr12	76582571	76583571	+	910.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013675, exon 36 of 36)	3' UTR (NM_013675, exon 36 of 36)	-35146.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67291279-4	chr10	67290757	67291757	+	910.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5976.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6264494-2	chr11	6263994	6264994	+	910.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026538, intron 7 of 13)	intron (NM_026538, intron 7 of 13)	3235.0	NM_026538	52513.0	Mm.29810	NM_026538	ENSMUSG00000004393	Ddx56	2600001H07Rik|D11Ertd619e|Noh61	DEAD (Asp-Glu-Ala-Asp) box polypeptide 56	protein-coding	0.5	0.0	0.5	4.0	0.0	0.0
Merged-chr18-20897795-2	chr18	20897295	20898295	+	910.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1717.0	NM_177038	75964.0	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139418549-2	chr5	139418049	139419049	+	910.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	-4630.0	NM_029771	76854.0	Mm.389706	NM_029771	ENSMUSG00000053647	Gper1	6330420K13Rik|CMKRL2|Ceprl|FEG-1|GPCR-Br|Gper|Gpr30	G protein-coupled estrogen receptor 1	protein-coding	2.0	0.0	0.0	2.0	0.0	0.0
Merged-chr4-150086484-2	chr4	150085984	150086984	+	910.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1019.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-112216123-4	chr2	112215614	112216614	+	910.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23727.0	NM_207206	99010.0	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	1.5	0.0	1.0	2.5	5.5	0.0
Merged-chr14-37134326-2	chr14	37133826	37134826	+	910.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_078478, intron 1 of 8)	intron (NM_078478, intron 1 of 8)	813.0	NM_001199122	66092.0	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-47245019-2	chr13	47244519	47245519	+	910.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001170643, exon 8 of 8)	3' UTR (NM_001170643, exon 8 of 8)	51016.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	4.0	0.0	0.0	9.0	0.0	1.5
Merged-chr9-99450457-2	chr9	99449957	99450957	+	910.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5786.0	NM_001165957	623534.0	Mm.484967	NM_001165957		Nme9	Txndc6	NME/NM23 family member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102919854-2	chr7	102919354	102920354	+	910.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7776.0	NM_147089	259093.0	Mm.377837	NM_147089	ENSMUSG00000073963	Olfr572	MOR10-2	olfactory receptor 572	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-35696062-2	chr5	35695562	35696562	+	910.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16282.0	NM_030127	78558.0	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3776061-3	chr12	3775505	3776505	+	910.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027870, intron 18 of 19)	intron (NR_027870, intron 18 of 19)	-30975.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4366507-2	chr18	4366007	4367007	+	910.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040328, intron 2 of 3)	intron (NR_040328, intron 2 of 3)	-9085.0	NM_001361008	67440.0	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58980782-2	chr15	58980282	58981282	+	910.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	46972.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51289313-3	chr3	51288811	51289811	+	910.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 4 of 9)	intron (NM_023502, intron 4 of 9)	-11797.0	NM_001291062	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60468417-2	chr13	60467917	60468917	+	910.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-133530.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-160905718-2	chr1	160905218	160906218	+	910.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024952)	promoter-TSS (NM_001024952)	-693.0	NM_001024952	381305.0	Mm.329667	NM_001024952	ENSMUSG00000040423	Rc3h1	5730557L09Rik|Gm551|N28103|mKIAA2025	RING CCCH (C3H) domains 1	protein-coding	2.5	14.5	10.0	5.5	22.0	13.5
Merged-chr3-95233118-2	chr3	95232618	95233618	+	910.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038708, intron 3 of 4)	intron (NM_001038708, intron 3 of 4)	4175.0	NM_001038708	57912.0	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-72942554-1	chr1	72942054	72943054	+	910.5	f0_balb.idr	Intergenic	RMER19B|LTR|ERVK	-67689.0	NM_010518	16011.0	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135687125-2	chr3	135686625	135687625	+	910.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 1 of 24)	intron (NM_008689, intron 1 of 24)	4422.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97343800-3	chr11	97343261	97344261	+	910.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081220, exon 7 of 11)	exon (NM_001081220, exon 7 of 11)	8312.0	NM_001081220	217143.0	Mm.32622	NM_175453	ENSMUSG00000070337	Gpr179	5330439C02Rik|Gpr158l1	G protein-coupled receptor 179	protein-coding	4.0	0.5	0.0	2.5	16.0	4.5
Merged-chr6-129235227-2	chr6	129234727	129235727	+	910.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040268, intron 2 of 3)	RMER17C|LTR|ERVK	2818.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	26.5	88.5	48.0	24.0	87.0	40.0
Merged-chr3-9896587-3	chr3	9896138	9897138	+	910.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62959.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	4.5	30.0	18.0	14.5	29.0	32.0
Merged-chr6-114644168-7	chr6	114643664	114644664	+	910.464294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028835, intron 1 of 18)	intron (NM_028835, intron 1 of 18)	1067.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30553566-4	chr7	30553072	30554072	+	910.4583130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_128568)	TTS (NR_128568)	270.0	NM_001012401	243912.0	Mm.34885	NM_001012401	ENSMUSG00000036854	Hspb6	AA387366|Gm479|Hsp20	heat shock protein, alpha-crystallin-related, B6	protein-coding	4.5	7.5	2.5	5.0	7.0	1.5
Merged-chr9-62344598-8	chr9	62344069	62345069	+	910.444641	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 1 of 6)	CpG	3226.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-22345941-3	chr10	22345439	22346439	+	910.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-15955.0	NM_020030	56554.0	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	0.0	0.0	0.0	4.5	0.5	0.0
Merged-chr10-81411823-3	chr10	81411316	81412316	+	910.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_152732)	TTS (NR_152732)	2241.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-144197911-4	chr1	144197428	144198428	+	910.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20556.0	NM_153171	246709.0	Mm.38271	NM_153171	ENSMUSG00000051079	Rgs13	-	regulator of G-protein signaling 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111433186-4	chr12	111432711	111433711	+	910.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9450.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54371703-3	chr13	54371186	54372186	+	910.422241	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009946, intron 1 of 3)	CpG	337.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38228605-4	chr18	38228125	38229125	+	910.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-18863.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0.0	11.0	7.0	0.0	8.0	6.0
Merged-chr12-79070138-3	chr12	79069648	79070648	+	910.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181073, intron 18 of 28)	intron (NM_181073, intron 18 of 28)	19522.0	NM_029988	110417.0	Mm.268317	NM_029988	ENSMUSG00000021120	Pigh	2210416H01Rik|A930028P05Rik	phosphatidylinositol glycan anchor biosynthesis, class H	protein-coding	1.5	0.5	0.0	2.0	1.5	4.0
Merged-chr10-63164786-3	chr10	63164279	63165279	+	910.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182992, intron 4 of 19)	intron (NM_182992, intron 4 of 19)	39173.0	NM_182992	68802.0	Mm.259767	NM_182992	ENSMUSG00000020067	Mypn	1110056A04Rik|9830112J03|AI853556|mKIAA4170	myopalladin	protein-coding	4.0	2.0	8.5	4.0	2.0	6.5
Merged-chr4-63590128-4	chr4	63589630	63590630	+	910.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	10634.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51881952-3	chr13	51881455	51882455	+	910.3777470000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35280.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128790937-4	chr10	128790449	128791449	+	910.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164197)	promoter-TSS (NM_001164197)	-6.0	NM_021412	58223.0	Mm.131266	NM_021412	ENSMUSG00000025355	Mmp19	-	matrix metallopeptidase 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119124959-4	chr4	119124473	119125473	+	910.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011400, intron 2 of 9)	MIR3|SINE|MIR	16228.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	23.5	65.5	45.5	12.5	40.0	21.0
Merged-chr12-38931944-4	chr12	38931447	38932447	+	910.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	148236.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.0	0.0	0.0	0.0	2.0	0.5
Merged-chr5-19951931-4	chr5	19951418	19952418	+	910.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015823, intron 1 of 21)	intron (NM_015823, intron 1 of 21)	44400.0	NM_015823	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116885476-4	chr11	116885005	116886005	+	910.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31505.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	1.0	0.0	2.0	1.0	0.0	2.0
Merged-chr14-79522538-4	chr14	79522037	79523037	+	910.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	6863.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-75511720-4	chr12	75511239	75512239	+	910.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012024, intron 3 of 13)	intron (NM_012024, intron 3 of 13)	84461.0	NM_012024	26932.0	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-77524535-2	chr14	77524092	77525092	+	910.333374	f0_c57.idr|f1_balb.idr	intron (NM_001253759, intron 7 of 19)	intron (NM_001253759, intron 7 of 19)	-17724.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	15.5	13.5	7.0	6.0	7.5	3.5
Merged-chr4-3483045-3	chr4	3482552	3483552	+	910.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY3-int|LTR|ERVK	-54038.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	0.0	12.5	8.0	12.5	16.5	3.0
Merged-chr11-116807316-1	chr11	116806816	116807816	+	910.3333130000001	f0_balb.idr	3' UTR (NM_001347633, exon 5 of 5)	3' UTR (NM_001347633, exon 5 of 5)	20730.0	NM_026280	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	2.5	1.0	0.5	0.0	2.0	1.5
Merged-chr5-38483712-4	chr5	38483219	38484219	+	910.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001012363)	promoter-TSS (NM_001012363)	-334.0	NM_001012363	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37265987-3	chr19	37265511	37266511	+	910.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1916.0	NR_040298	77059.0	Mm.251476	NR_040298		4931408D14Rik	-	RIKEN cDNA 4931408D14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-77928183-4	chr14	77927674	77928674	+	910.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029495, intron 2 of 11)	intron (NM_029495, intron 2 of 11)	23935.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	4.5	1.0	2.5	6.0	14.5	2.5
Merged-chr5-65697324-3	chr5	65696833	65697833	+	910.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081321, intron 1 of 31)	CpG-11111	523.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76758583-3	chr15	76758085	76759085	+	910.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 2 of 10)	intron (NM_198420, intron 2 of 10)	-34740.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	3.5	0.5	1.5	0.0	3.0	4.0
Merged-chr5-125392370-3	chr5	125391874	125392874	+	910.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2357.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123539289-4	chr9	123538772	123539772	+	910.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357485, intron 1 of 19)	intron (NM_001357485, intron 1 of 19)	9519.0	NM_030692	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152122311-3	chr3	152121809	152122809	+	910.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016867, intron 3 of 5)	intron (NM_016867, intron 3 of 5)	43591.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70981264-3	chr14	70980759	70981759	+	910.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91152.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	6.0	2.5	4.5	0.0	10.0	13.0
Merged-chr3-116583288-4	chr3	116582778	116583778	+	910.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175413)	TTS (NM_175413)	11609.0	NR_152258	229780.0	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	1.5	33.0	12.5	23.0	9.0	7.0
Merged-chr13-45392674-3	chr13	45392192	45393192	+	910.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153789, intron 2 of 6)	RSINE1|SINE|B4	2950.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-18245378-4	chr3	18244858	18245858	+	910.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-2020.0	NM_007825	13123.0	Mm.316000	NM_007825	ENSMUSG00000039519	Cyp7b1	AW261589|D3Ertd552e|hct-1	cytochrome P450, family 7, subfamily b, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20847732-4	chr11	20847243	20848243	+	910.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16635.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84675178-4	chr12	84674732	84675732	+	910.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23575.0	NM_001033334	627191.0	Mm.152484	NM_001033334	ENSMUSG00000071234	Syndig1l	DSPC1|Gm261|SynDIG2|Tmem90a	synapse differentiation inducing 1 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165587895-4	chr1	165587400	165588400	+	910.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46641.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85170240-4	chr11	85169739	85170739	+	910.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028589)	promoter-TSS (NM_028589)	-857.0	NM_028589	73634.0	Mm.48850	NM_028589	ENSMUSG00000018479	1700125H20Rik	-	RIKEN cDNA 1700125H20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122779871-2	chr10	122779378	122780378	+	910.2999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	100563.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0.0	19.0	4.5	5.5	0.5	1.5
Merged-chr2-78923129-4	chr2	78922633	78923633	+	910.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151457, intron 6 of 6)	intron (NR_151457, intron 6 of 6)	53455.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146328138-4	chr3	146327657	146328657	+	910.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50787.0	NR_033542	100038607.0	Mm.365888	NR_033542	ENSMUSG00000105602	Gm10636	-	predicted gene 10636	ncRNA	14.5	0.0	6.5	3.0	4.5	2.5
Merged-chr19-5747211-3	chr19	5746711	5747711	+	910.288879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008520, intron 7 of 27)	intron (NM_008520, intron 7 of 27)	6307.0	NM_008520	16998.0	Mm.182396	NM_008520	ENSMUSG00000024940	Ltbp3	Ltbp2|mFLJ00070	latent transforming growth factor beta binding protein 3	protein-coding	0.0	4.5	0.0	0.0	1.5	3.0
Merged-chr1-42866188-3	chr1	42865699	42866699	+	910.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023514, intron 2 of 10)	RLTR9A3|LTR|ERVK	14966.0	NM_023514	69527.0	Mm.252982	NM_023514	ENSMUSG00000060679	Mrps9	2310002A08Rik|AW322516|Mrp-S9|S9mt|mg637	mitochondrial ribosomal protein S9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95049401-4	chr4	95048924	95049924	+	910.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010591, exon 1 of 1)	3' UTR (NM_010591, exon 1 of 1)	2798.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	5.5	3.5	2.0	5.5	3.5	2.0
Merged-chr15-73078791-8	chr15	73078295	73079295	+	910.2728880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11617.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-88892568-4	chr18	88892058	88893058	+	910.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018821, intron 1 of 2)	intron (NM_018821, intron 1 of 2)	1649.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55420575-2	chr13	55420075	55421075	+	910.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_021489, intron 10 of 13)	intron (NM_021489, intron 10 of 13)	-5343.0	NM_029303	75477.0	Mm.432537	NM_029303	ENSMUSG00000044444	Pfn3	1700012P12Rik	profilin 3	protein-coding	1.0	5.5	0.0	0.0	0.0	0.0
Merged-chr10-63380704-2	chr10	63380203	63381203	+	910.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1740.0	NM_001253685	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101097044-4	chr13	101096541	101097541	+	910.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-135086.0	NR_046158	328324.0	Mm.402274	NR_046158	ENSMUSG00000114590	5930438M14Rik	5930438M14	RIKEN cDNA 5930438M14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120364550-4	chr8	120364051	120365051	+	910.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124315.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-67842964-4	chr9	67842467	67843467	+	910.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177184, intron 1 of 84)	intron (NM_177184, intron 1 of 84)	2571.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	44.5	118.0	65.0	54.0	142.5	104.0
Merged-chr18-88981076-4	chr18	88980573	88981573	+	910.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175542, intron 7 of 48)	intron (NM_175542, intron 7 of 48)	9043.0	NR_105777	102466633.0		NR_105777	ENSMUSG00000098676	Mir6359	Gm27328|mmu-mir-6359	microRNA 6359	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101364989-4	chr7	101364502	101365502	+	910.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	MIRc|SINE|MIR	-13120.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	2.0	19.5	11.0	16.0	17.5	14.0
Merged-chr3-97931715-4	chr3	97931200	97932200	+	910.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033779, intron 1 of 1)	intron (NM_001033779, intron 1 of 1)	1527.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49186112-2	chr13	49185612	49186612	+	910.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1435.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21502549-3	chr10	21502014	21503014	+	910.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90631.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	5.5	8.0	5.0	5.0	8.5	1.0
Merged-chr6-117917725-4	chr6	117917222	117918222	+	910.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166431, intron 2 of 2)	intron (NM_001166431, intron 2 of 2)	428.0	NM_001166427	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44191359-4	chr9	44190861	44191861	+	910.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 2 of 15)	intron (NM_007619, intron 2 of 15)	42685.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	2.0	9.5	2.0	6.5	16.0	1.0
Merged-chr6-87189968-4	chr6	87189462	87190462	+	910.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054041, intron 14 of 17)	intron (NM_054041, intron 14 of 17)	85216.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	9.0	0.5	2.5	5.5	3.5	0.5
Merged-chr1-151926277-4	chr1	151925790	151926790	+	910.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 3 of 5)	intron (NM_197990, intron 3 of 5)	164030.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-68196200-4	chr8	68195703	68196703	+	910.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80325.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	127.0	257.0	232.5	93.0	302.0	196.0
Merged-chr12-25393959-4	chr12	25393461	25394461	+	910.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	264787.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	7.0	2.5	6.0	0.0	5.0	2.0
Merged-chr15-58344096-4	chr15	58343630	58344630	+	910.179199	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027211, intron 8 of 8)	intron (NM_027211, intron 8 of 8)	-19961.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	78.0	269.0	157.5	105.0	170.5	145.0
Merged-chr4-105561003-4	chr4	105560500	105561500	+	910.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	403653.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	3.5	9.5	10.0	1.5	12.0	8.0
Merged-chr14-31436733-2	chr14	31436233	31437233	+	910.1666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011894)	promoter-TSS (NM_011894)	-633.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9377538-4	chr18	9377001	9378001	+	910.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026484, intron 3 of 9)	intron (NM_026484, intron 3 of 9)	72653.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	5.5	14.0	17.0	4.5	8.0	5.0
Merged-chr10-117842180-3	chr10	117841688	117842688	+	910.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	3786.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	14.0	28.0	31.0	20.5	40.5	25.5
Merged-chr11-59964986-3	chr11	59964485	59965485	+	910.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009026)	promoter-TSS (NM_009026)	-41.0	NM_009026	19416.0	Mm.3903	NM_009026	ENSMUSG00000049892	Rasd1	Dexras1	RAS, dexamethasone-induced 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19089016-4	chr7	19088507	19089507	+	910.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032418, intron 9 of 14)	intron (NM_032418, intron 9 of 14)	2179.0	NR_037282	100526504.0		NR_037282	ENSMUSG00000092659	Mir3100	mir-3100|mmu-mir-3100	microRNA 3100	ncRNA	4.5	5.0	6.0	3.0	1.5	0.0
Merged-chr4-53050765-2	chr4	53050265	53051265	+	910.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 35 of 49)	intron (NM_013454, intron 35 of 49)	38885.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21742039-4	chr14	21741560	21742560	+	910.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007268, intron 5 of 7)	intron (NM_001007268, intron 5 of 7)	819.0	NM_013849	27389.0	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35837686-4	chr17	35837179	35838179	+	910.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011655, intron 1 of 3)	intron (NM_011655, intron 1 of 3)	622.0	NM_011655	22154.0	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	13.5	52.0	41.0	5.5	50.5	18.5
Merged-chr10-87960218-4	chr10	87959669	87960669	+	910.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6502.0	NR_000040	22172.0	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-37705033-4	chr3	37704514	37705514	+	910.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	19346.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155094171-7	chr4	155093664	155094664	+	910.119019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356327, intron 6 of 12)	intron (NM_001356327, intron 6 of 12)	7560.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16093172-3	chr1	16092666	16093666	+	910.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001243238, exon 1 of 5)	5' UTR (NM_001243238, exon 1 of 5)	159.0	NM_001243238	75799.0	Mm.78557	NM_001243238	ENSMUSG00000067795	4930444P10Rik	-	RIKEN cDNA 4930444P10 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24344858-3	chr17	24344308	24345308	+	910.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001031621, intron 2 of 29)	intron (NM_001031621, intron 2 of 29)	2444.0	NM_001031621	381072.0	Mm.328842	NM_001031621	ENSMUSG00000035435	Abca17	-	ATP-binding cassette, sub-family A (ABC1), member 17	protein-coding	10.5	35.0	28.5	10.5	1.0	11.0
Merged-chr5-113180384-3	chr5	113179813	113180813	+	910.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17000.0	NM_172884	243219.0	Mm.160131	NM_172884	ENSMUSG00000051339	2900026A02Rik	8430408O14Rik|A530094D01|AW539426|Gm449|Kiaa1671|mKIAA1671	RIKEN cDNA 2900026A02 gene	protein-coding	0.0	0.5	0.0	1.5	0.0	2.5
Merged-chr7-49754959-3	chr7	49754454	49755454	+	910.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4152.0	NM_001146053	53415.0	Mm.20801	NM_016865	ENSMUSG00000039745	Htatip2	AW111545|Cc3|Tip30	HIV-1 Tat interactive protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76201474-4	chr16	76200950	76201950	+	910.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78837.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107316989-2	chr11	107316489	107317489	+	910.099976	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	intron (NR_153311, intron 4 of 9)	-127608.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47542639-4	chr14	47542135	47543135	+	910.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172599, exon 10 of 10)	3' UTR (NM_172599, exon 10 of 10)	25799.0	NM_172599	100504663.0	Mm.287279	NM_172599	ENSMUSG00000037526	Atg14	4832427M01|Atg14L|D14Ertd114e|D14Ertd436e	autophagy related 14	protein-coding	27.0	42.0	65.0	9.5	32.5	23.0
Merged-chr10-57001535-4	chr10	57001035	57002035	+	910.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	484818.0	NR_045353	74928.0	Mm.416643	NR_045353	ENSMUSG00000097370	4930467K11Rik	-	RIKEN cDNA 4930467K11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-47234728-3	chr13	47234210	47235210	+	910.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 4 of 7)	PB1D7|SINE|Alu	40707.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0.0	0.0	3.0	4.0	14.0	15.5
Merged-chr6-114395520-4	chr6	114395000	114396000	+	910.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2436.0	NM_001317125	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17585318-4	chr17	17584821	17585821	+	910.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	39168.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	27.0	32.0	43.5	18.5	30.0	41.0
Merged-chr17-37286894-4	chr17	37286407	37287407	+	910.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-6489.0	NM_146515	258508.0	Mm.377544	NM_146515	ENSMUSG00000061972	Olfr99	MOR156-1	olfactory receptor 99	protein-coding	0.5	4.5	1.0	0.0	0.0	0.0
Merged-chr14-26971659-4	chr14	26971151	26972151	+	910.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1100.0	NM_145221	72993.0	Mm.202322	NM_145221	ENSMUSG00000040760	Appl1	2900057D21Rik|7330406P05Rik|AI585782|AW209077|BB022931|C88264|DIP13	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	protein-coding	19.0	30.0	33.0	17.5	28.0	26.5
Merged-chr19-43815965-7	chr19	43815398	43816398	+	910.003967	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013806, intron 16 of 31)	PB1D11|SINE|Alu	-22905.0	NR_033472	100038628.0	Mm.212585	NR_033472	ENSMUSG00000025194	Gm10768	-	predicted gene 10768	ncRNA	9.5	14.5	5.5	10.0	2.0	0.5
Merged-chr14-61083853-3	chr14	61083362	61084362	+	910.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37007.0	NM_013869	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92973698-3	chr1	92973228	92974228	+	910.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001104529, intron 1 of 1)	intron (NM_001104529, intron 1 of 1)	609.0	NM_001104529	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150610962-1	chr4	150610462	150611462	+	910.0	f1_balb.idr	exon (NM_001085492, exon 13 of 23)	exon (NM_001085492, exon 13 of 23)	41212.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.0	0.0	0.0	0.0	2.0	1.5
Merged-chr8-41002108-2	chr8	41001611	41002611	+	910.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_001005863, intron 8 of 13)	B1F1|SINE|Alu	-15357.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	51.0	146.5	102.5	14.0	41.0	24.0
Merged-chr10-14178936-1	chr10	14178436	14179436	+	910.0	f0_balb.idr	Intergenic	Intergenic	212557.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	7.0	1.5	5.5	1.5	8.0	4.5
Merged-chr7-126749014-3	chr7	126748480	126749480	+	910.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-10646.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65319477-1	chr3	65318977	65319977	+	910.0	f0_c57.idr	exon (NM_001289450, exon 9 of 15)	exon (NM_001289450, exon 9 of 15)	-16792.0	NR_126080	102637797.0	Mm.446731	NR_126080	ENSMUSG00000104093	A330015K06Rik	-	RIKEN cDNA A330015K06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-29607294-4	chr16	29606809	29607809	+	910.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133752, intron 7 of 28)	intron (NM_133752, intron 7 of 28)	27975.0	NM_001199177	74143.0	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	7.5	0.5	3.0	1.5	17.5	12.0
Merged-chr10-96188969-2	chr10	96188469	96189469	+	910.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37238.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3419590-2	chr12	3419103	3420103	+	910.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030694, intron 1 of 2)	MTB|LTR|ERVL-MaLR	7144.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21326064-4	chr11	21325570	21326570	+	910.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290634, intron 8 of 9)	Lx8|LINE|L1	18605.0	NR_035454	100316753.0		NR_035454	ENSMUSG00000089555	Mir1933	mir-1933|mmu-mir-1933	microRNA 1933	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102733565-4	chr12	102733070	102734070	+	910.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10091.0	NM_001142937	64113.0	Mm.291222	NM_022323	ENSMUSG00000096458	Moap1	AA987038|Map-1|Pnma4	modulator of apoptosis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66776299-2	chr15	66775799	66776799	+	910.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 41 of 47)	intron (NM_009375, intron 41 of 47)	55530.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	5.5	0.0	0.0	0.0	0.0	2.0
Merged-chr14-102973736-2	chr14	102973236	102974236	+	910.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8896.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54057191-4	chr6	54056654	54057654	+	910.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	MIR3|SINE|MIR	17222.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27284328-2	chr2	27283828	27284828	+	910.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009500, intron 14 of 27)	intron (NM_009500, intron 14 of 27)	-37025.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5293883-4	chr17	5293386	5294386	+	910.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 8 of 19)	intron (NM_001085355, intron 8 of 19)	124881.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-21370683-7	chr12	21370237	21371237	+	910.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291871, intron 1 of 18)	intron (NM_001291871, intron 1 of 18)	2895.0	NR_102380	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	209.0	422.0	267.5	107.0	231.0	172.5
Merged-chr17-83279869-2	chr17	83279369	83280369	+	910.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64586.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119676945-2	chr11	119676445	119677445	+	910.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028898, intron 3 of 33)	intron (NM_028898, intron 3 of 33)	74040.0	NM_028898	74370.0	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	1.5	0.0	0.5	1.5	2.5	0.5
Merged-chr10-82900954-1	chr10	82900454	82901454	+	910.0	f1_c57bl6.idr	Intergenic	Intergenic	34328.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	50.5	82.0	64.0	18.0	37.0	18.5
Merged-chr4-135382534-3	chr4	135382036	135383036	+	910.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145555, intron 1 of 4)	intron (NM_145555, intron 1 of 4)	3136.0	NM_001168498	230822.0	Mm.35548	NM_145555	ENSMUSG00000043924	Ncmap	A330049M08Rik|AA545175|Mp11	noncompact myelin associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76072775-4	chr14	76072264	76073264	+	910.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38051.0	NM_026177	67467.0	Mm.260767	NM_026177	ENSMUSG00000022008	Gpalpp1	1200011I18Rik|Kiaa1704	GPALPP motifs containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99985038-4	chr5	99984485	99985485	+	910.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6047.0	NM_001077267	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89337665-5	chr3	89337067	89338067	+	910.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007910, intron 1 of 3)	intron (NM_007910, intron 1 of 3)	461.0	NM_007910	13639.0	Mm.16332	NM_007910	ENSMUSG00000028040	Efna4	EFL-4|Epl4|LERK-4	ephrin A4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-30781222-4	chr10	30780725	30781725	+	910.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 1 of 14)	intron (NM_001358842, intron 1 of 14)	22101.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	1.5	0.0	1.0	1.0	4.0	3.0
Merged-chr7-142534746-2	chr7	142534246	142535246	+	910.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011288, intron 1 of 4)	intron (NM_011288, intron 1 of 4)	1629.0	NM_011288	19935.0	Mm.12144	NM_011288	ENSMUSG00000037772	Mrpl23	L23mrp|Rpl23|Rpl23l	mitochondrial ribosomal protein L23	protein-coding	0.0	0.0	4.5	0.0	1.0	4.5
Merged-chr9-75561325-1	chr9	75560825	75561825	+	910.0	f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-1668.0	NM_001357828	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	15.5	1.5	2.0	0.0	5.5	0.5
Merged-chr13-47056197-1	chr13	47055697	47056697	+	910.0	f1_balb.idr	intron (NM_172262, intron 6 of 20)	intron (NM_172262, intron 6 of 20)	12698.0	NM_172262	218214.0	Mm.31259	NM_172262	ENSMUSG00000038080	Kdm1b	4632428N09Rik|AI482520|Aof1	lysine (K)-specific demethylase 1B	protein-coding	2.5	3.5	2.5	5.5	0.0	2.0
Merged-chr11-22436418-4	chr11	22435929	22436929	+	910.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-75854.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	0.5	6.0	1.5	1.0	4.0	2.0
Merged-chr12-69482519-2	chr12	69482019	69483019	+	910.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6969.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-116130-1	chr1	115630	116630	+	910.0	f1_c57bl6.idr	Intergenic	Intergenic	3555368.0	NM_001011874	497097.0	Mm.454496	NM_001011874	ENSMUSG00000051951	Xkr4	AY534250|Gm210|XRG4|mKIAA1889	X-linked Kx blood group related 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-39599174-1	chr8	39598674	39599674	+	910.0	f1_balb.idr	intron (NM_001113326, intron 8 of 9)	MT2A|LTR|ERVL	43504.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	2.0	26.0	13.5	4.0	12.0	2.5
Merged-chr5-115242480-2	chr5	115241980	115242980	+	910.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_016698, exon 16 of 17)	exon (NM_016698, exon 16 of 17)	6629.0	NM_026398	117109.0	Mm.24636	NM_026398	ENSMUSG00000060152	Pop5	1500019J17Rik|2700077E03Rik|AW049989|Rnasep3	processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)	protein-coding	0.0	3.5	0.0	2.0	0.0	2.0
Merged-chr5-101830470-2	chr5	101829970	101830970	+	910.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65340.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54652761-1	chr14	54652261	54653261	+	910.0	f1_balb.idr	intron (NM_001085473, intron 8 of 18)	intron (NM_001085473, intron 8 of 18)	924.0	NM_001242605	56215.0	Mm.297078	NM_019567	ENSMUSG00000022185	Acin1	2610036I19Rik|2610510L13Rik|Acinus|Acn|C79325|acinusL|acinusS|mKIAA0670	apoptotic chromatin condensation inducer 1	protein-coding	13.0	29.5	34.0	11.5	20.5	26.5
Merged-chr9-65539960-2	chr9	65539460	65540460	+	910.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40127.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70896816-1	chr8	70896316	70897316	+	910.0	f1_balb.idr	promoter-TSS (NR_002901)	promoter-TSS (NR_002901)	627.0	NM_029751	76808.0	Mm.379251	NM_029751	ENSMUSG00000045128	Rpl18a	2510019J09Rik	ribosomal protein L18A	protein-coding	6.5	18.0	34.5	19.5	16.0	16.0
Merged-chr9-83593073-3	chr9	83592570	83593570	+	910.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 2 of 3)	intron (NM_172507, intron 2 of 3)	44732.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	2.5	0.0	7.0	2.0	1.0	1.5
Merged-chr1-85624672-1	chr1	85624172	85625172	+	910.0	f1_balb.idr	intron (NM_001013817, intron 7 of 16)	intron (NM_001013817, intron 7 of 16)	-20781.0	NM_175397	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-101012265-3	chr3	101011784	101012784	+	910.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167906, intron 5 of 8)	intron (NM_001167906, intron 5 of 8)	17211.0	NM_001167906	630146.0	Mm.190915	NM_001099332	ENSMUSG00000086564	Cd101	EWI-101|Gm1016|Gm734|Igsf2	CD101 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88822144-2	chr15	88821644	88822644	+	910.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029720, intron 5 of 9)	intron (NM_029720, intron 5 of 9)	2498.0	NM_029720	76737.0	Mm.292567	NM_029720	ENSMUSG00000023272	Creld2	5730592L21Rik|C85758	cysteine-rich with EGF-like domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80928570-4	chr7	80928070	80929070	+	910.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019951, intron 2 of 5)	intron (NM_019951, intron 2 of 5)	18980.0	NM_019951	56529.0	Mm.43760	NM_019951	ENSMUSG00000025724	Sec11a	1810012E07Rik|18kDa|Sec11l1|Sid2895p|Spc18|sid2895	SEC11 homolog A, signal peptidase complex subunit	protein-coding	0.0	2.0	1.0	0.0	0.0	2.0
Merged-chr10-67645115-2	chr10	67644615	67645615	+	910.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73156.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-22431855-3	chr17	22431347	22432347	+	910.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198003, intron 2 of 6)	intron (NM_198003, intron 2 of 6)	7645.0	NM_001331198	74149.0	Mm.30767	NM_198003	ENSMUSG00000071266	Zfp946	1300003B13Rik	zinc finger protein 946	protein-coding	3.0	0.0	0.5	0.0	3.0	1.0
Merged-chr12-100841404-4	chr12	100840892	100841892	+	909.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001361020, exon 6 of 14)	exon (NM_001361020, exon 6 of 14)	58132.0	NM_001177674	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99252563-4	chr10	99252053	99253053	+	909.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10678.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-81501195-3	chr17	81500699	81501699	+	909.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	237188.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13596172-5	chr8	13595570	13596570	+	909.9428710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 5 of 23)	intron (NM_009025, intron 5 of 23)	-33609.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116327415-4	chr3	116326883	116327883	+	909.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001173553, intron 7 of 13)	intron (NM_001173553, intron 7 of 13)	26861.0	NM_001355646	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	0.0	6.5	0.5	2.5	0.5	1.0
Merged-chr5-62753007-4	chr5	62752520	62753520	+	909.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	13157.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37347773-4	chr9	37347293	37348293	+	909.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081429, exon 2 of 16)	exon (NM_001081429, exon 2 of 16)	599.0	NM_001081429	245902.0	Mm.390150	NM_001081429	ENSMUSG00000034303	Ccdc15	A630039F14Rik|D030074L19	coiled-coil domain containing 15	protein-coding	38.0	62.0	71.0	29.0	52.0	42.0
Merged-chr10-120875853-2	chr10	120875320	120876320	+	909.9166869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_177092, intron 1 of 6)	intron (NM_177092, intron 1 of 6)	18191.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	5.0	6.0	5.0	2.5	0.0	4.0
Merged-chr14-115017891-4	chr14	115017380	115018380	+	909.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25791.0	NR_029785	723905.0		NR_029785	ENSMUSG00000065508	Mir17	Mirn17|mir-17|mmu-mir-17	microRNA 17	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69871781-4	chr12	69871290	69872290	+	909.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201519, intron 2 of 30)	intron (NM_201519, intron 2 of 30)	-21315.0	NM_178628	73991.0	Mm.474462	NM_178628	ENSMUSG00000021066	Atl1	4930435M24Rik|Adfsp|Fsp1|Spg3|Spg3a	atlastin GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100396728-4	chr11	100396263	100397263	+	909.9097289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010593, intron 1 of 13)	intron (NM_010593, intron 1 of 13)	1027.0	NM_010593	16480.0	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-38020377-4	chr19	38019885	38020885	+	909.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 3 of 53)	intron (NM_001302140, intron 3 of 53)	23192.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	76.0	84.0	75.0	24.5	80.0	47.5
Merged-chr4-102955705-3	chr4	102955201	102956201	+	909.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285859, intron 17 of 23)	intron (NM_001285859, intron 17 of 23)	-30678.0	NM_001163767	67344.0	Mm.111346	NM_026100	ENSMUSG00000028523	Tctex1d1	1700055O19Rik	Tctex1 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-162006269-3	chr1	162005748	162006748	+	909.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040562, intron 2 of 2)	intron (NR_040562, intron 2 of 2)	1279.0	NR_040562	72753.0	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA	59.0	65.0	47.5	45.5	38.5	37.5
Merged-chr18-59175214-4	chr18	59174730	59175730	+	909.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081328)	promoter-TSS (NM_001081328)	-110.0	NM_001081328	78923.0	Mm.84007	NM_001081328	ENSMUSG00000058152	Chsy3	4833446K15Rik|AI662215	chondroitin sulfate synthase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116446156-4	chr11	116445674	116446674	+	909.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033267, intron 7 of 13)	intron (NM_001033267, intron 7 of 13)	8173.0	NM_001033267	217341.0	Mm.387352	NM_001033267	ENSMUSG00000070331	Qrich2	Gm66	glutamine rich 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73007591-4	chr2	73007092	73008092	+	909.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-27146.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77371359-4	chr11	77370852	77371852	+	909.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291190, intron 1 of 13)	intron (NM_001291190, intron 1 of 13)	23072.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-77909092-4	chr14	77908589	77909589	+	909.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029495, intron 1 of 11)	MTD|LTR|ERVL-MaLR	4850.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-33497491-4	chr4	33496976	33497976	+	909.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305273, intron 14 of 15)	L1M3|LINE|L1	59395.0	NR_106198	102465904.0		NR_106198	ENSMUSG00000098310	Mir8118	Gm27954|mmu-mir-8118	microRNA 8118	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148440051-4	chr2	148439554	148440554	+	909.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010740, exon 2 of 2)	3' UTR (NM_010740, exon 2 of 2)	3481.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-19049768-6	chr2	19049205	19050205	+	909.865051	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51386.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-8622483-6	chr5	8621984	8622984	+	909.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011076, intron 2 of 29)	CpG	468.0	NM_001347311	242819.0	Mm.332192	NM_198620	ENSMUSG00000040570	Rundc3b	Gm440	RUN domain containing 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49712059-4	chr11	49711587	49712587	+	909.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212484, intron 1 of 11)	CpG	635.0	NM_212484	104625.0	Mm.247113	NM_212484	ENSMUSG00000020362	Cnot6	CCR4	CCR4-NOT transcription complex, subunit 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-137879884-4	chr3	137879386	137880386	+	909.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033155, intron 1 of 7)	(TTG)n|Simple_repeat|Simple_repeat	12211.0	NM_001033155	70604.0	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	16.0	28.0	42.5	20.5	27.5	23.0
Merged-chr8-111745710-4	chr8	111745098	111746098	+	909.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1749.0	NM_009954	12927.0	Mm.3758	NM_009954	ENSMUSG00000031955	Bcar1	AI385681|Cas|Crkas	breast cancer anti-estrogen resistance 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-48928608-4	chr7	48928136	48929136	+	909.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30437.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-84876570-2	chr4	84876070	84877070	+	909.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7739.0	NM_175275	338349.0	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	0.0	0.0	1.0	0.0	0.0	0.5
Merged-chr6-116468279-4	chr6	116467757	116468757	+	909.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7079.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21223004-3	chr11	21222475	21223475	+	909.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16057.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-164071259-2	chr1	164070759	164071759	+	909.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164059, intron 5 of 7)	intron (NM_001164059, intron 5 of 7)	9183.0	NM_011346	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72884934-4	chr6	72884450	72885450	+	909.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019715, intron 1 of 6)	MIRc|SINE|MIR	14342.0	NM_001347231	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	0.0	2.5	3.0	0.0	0.5	1.5
Merged-chr2-152757231-4	chr2	152756750	152757750	+	909.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053091, intron 3 of 4)	intron (NM_053091, intron 3 of 4)	3077.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33047063-4	chr2	33046567	33047567	+	909.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355201, intron 6 of 29)	ORR1F|LTR|ERVL-MaLR	39390.0	NM_001355202	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163644150-2	chr2	163643650	163644650	+	909.7999880000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028113)	promoter-TSS (NR_028113)	-700.0	NR_028113	68386.0	Mm.410649	NR_028113	ENSMUSG00000058812	0610039K10Rik	-	RIKEN cDNA 0610039K10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44444622-4	chr9	44444111	44445111	+	909.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	-3743.0	NM_001033469	382074.0	Mm.335103	NM_001033469	ENSMUSG00000074397	Foxr1	Foxn5|Gm1115	forkhead box R1	protein-coding	15.0	7.5	3.0	10.5	9.0	6.0
Merged-chr5-5213623-4	chr5	5213126	5214126	+	909.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 4 of 14)	intron (NM_011074, intron 4 of 14)	52442.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124497017-4	chr5	124496519	124497519	+	909.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021430, intron 6 of 6)	intron (NM_021430, intron 6 of 6)	13864.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-149101253-4	chr3	149100763	149101763	+	909.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-146628.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	1.0	17.5	7.5	15.0	18.0	15.0
Merged-chr18-68148572-3	chr18	68148054	68149054	+	909.783325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	L2a|LINE|L2	-79392.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84111010-3	chr12	84110514	84111514	+	909.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3314.0	NM_028821	105000.0	Mm.101525	NM_028821	ENSMUSG00000042523	Dnal1	1700010H15Rik|AW121714|Dnalc1|E330027P08Rik	dynein, axonemal, light chain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85395902-3	chr12	85395387	85396387	+	909.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21170.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-97688948-4	chr1	97688437	97689437	+	909.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26919.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-41228938-4	chr9	41228501	41229501	+	909.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22846.0	NR_040392	78500.0	Mm.275715	NR_040392	ENSMUSG00000100837	1700063D05Rik	-	RIKEN cDNA 1700063D05 gene	ncRNA	4.0	0.0	1.5	5.5	0.0	5.0
Merged-chr1-89016030-4	chr1	89015523	89016523	+	909.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040471)	promoter-TSS (NR_040471)	-90.0	NR_040471	73475.0	Mm.491040	NR_040471	ENSMUSG00000099378	1700067G17Rik	-	RIKEN cDNA 1700067G17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50123983-3	chr17	50123426	50124426	+	909.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	Charlie1|DNA|hAT-Charlie	66571.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	4.5	16.0	18.0	15.5	13.5	6.0
Merged-chr7-105739226-4	chr7	105738711	105739711	+	909.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161724, intron 2 of 12)	intron (NM_001161724, intron 2 of 12)	-1826.0	NM_133951	101867.0	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135129028-4	chr4	135128541	135129541	+	909.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019732, intron 1 of 5)	intron (NM_019732, intron 1 of 5)	8396.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64769473-4	chr5	64768972	64769972	+	909.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34051.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76658600-2	chr16	76658100	76659100	+	909.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109805.0	NR_155449	102632730.0		NR_155449		Gm30726	-	predicted gene, 30726	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24385102-6	chr2	24384672	24385672	+	909.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177611)	promoter-TSS (NM_177611)	-160.0	NM_177611	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136658734-5	chr6	136658196	136659196	+	909.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025806, intron 1 of 10)	RSINE1|SINE|B4	3197.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	91.0	265.0	157.5	106.0	155.0	138.0
Merged-chr9-44127297-2	chr9	44126777	44127777	+	909.7333369999999	f1_balb.idr|f1_c57bl6.idr	intron (NR_152189, intron 1 of 1)	PB1D9|SINE|Alu	7208.0	NR_152189	100038560.0	Mm.429758	NR_152189		Gm10687	-	predicted gene 10687	ncRNA	3.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143154090-4	chr7	143153586	143154586	+	909.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008434, intron 2 of 15)	intron (NM_008434, intron 2 of 15)	46832.0	NM_008434	16535.0	Mm.439769	NM_008434	ENSMUSG00000009545	Kcnq1	AW559127|KVLQT1|Kcna9	potassium voltage-gated channel, subfamily Q, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51418819-4	chr13	51418395	51419395	+	909.6904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010101, exon 2 of 2)	exon (NM_010101, exon 2 of 2)	10277.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-126502535-4	chr10	126502041	126503041	+	909.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	207850.0	NR_105841	102465224.0		NR_105841	ENSMUSG00000098756	Mir378d	Gm27650|mmu-mir-378d	microRNA 378d	ncRNA	9.0	16.5	7.5	26.5	76.0	75.0
Merged-chr4-129016418-3	chr4	129015903	129016903	+	909.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23179.0	NM_001033966	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152697626-3	chr1	152697123	152698123	+	909.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346117, intron 1 of 18)	ORR1D1|LTR|ERVL-MaLR	-52928.0	NM_001081197	71281.0	Mm.158650	NM_001081197	ENSMUSG00000055547	Apobec4	4933431M11Rik	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8252215-4	chr19	8251694	8252694	+	909.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-33294.0	NM_001347426	236293.0	Mm.440581	NM_172776	ENSMUSG00000075044	Slc22a29	D630002G06Rik	solute carrier family 22. member 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-107324321-3	chr8	107323822	107324822	+	909.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018823, intron 2 of 14)	intron (NM_018823, intron 2 of 14)	30852.0	NM_133957	54446.0	Mm.390057	NM_018823	ENSMUSG00000003847	Nfat5	AI225870|B130038B15Rik|CAG-8|CAG80|NFATL1|OREBP|TonEBP|mKIAA0827|nfatz	nuclear factor of activated T cells 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23467031-3	chr13	23466546	23467546	+	909.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1145.0	NM_013483	12231.0	Mm.1420	NM_013483	ENSMUSG00000000706	Btn1a1	Btn	butyrophilin, subfamily 1, member A1	protein-coding	0.0	0.0	4.0	0.0	0.0	0.0
Merged-chr2-158284754-3	chr2	158284191	158285191	+	909.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177850)	TTS (NM_177850)	-21802.0	NM_008489	16803.0	Mm.218846	NM_008489	ENSMUSG00000016024	Lbp	Bpifd2|Ly88	lipopolysaccharide binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35696561-4	chr2	35696062	35697062	+	909.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290639)	promoter-TSS (NM_001290639)	-170.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97486994-3	chr6	97486499	97487499	+	909.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	821.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	146.5	408.5	289.0	119.0	249.5	218.0
Merged-chr9-47471984-3	chr9	47471468	47472468	+	909.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58202.0	NM_001310841	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3695892-3	chr12	3695378	3696378	+	909.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 9 of 17)	intron (NM_001162465, intron 9 of 17)	-111102.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46637302-4	chr17	46636799	46637799	+	909.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357130, intron 6 of 15)	intron (NM_001357130, intron 6 of 15)	-7795.0	NM_175168	71461.0	Mm.181833	NM_175168	ENSMUSG00000023972	Ptk7	8430404F20Rik|chz|mPTK7/CCK4	PTK7 protein tyrosine kinase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125771365-4	chr8	125770875	125771875	+	909.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175561, intron 27 of 33)	intron (NM_175561, intron 27 of 33)	37172.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120988561-4	chr11	120988067	120989067	+	909.662476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027874, intron 1 of 9)	intron (NM_027874, intron 1 of 9)	2766.0	NM_139059	104318.0	Mm.216227	NM_027874	ENSMUSG00000025162	Csnk1d	1200006A05Rik|AA409348|D930010H05Rik	casein kinase 1, delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157064205-4	chr2	157063710	157064710	+	909.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	15055.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24383826-4	chr2	24383387	24384387	+	909.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355231, intron 2 of 17)	intron (NM_001355231, intron 2 of 17)	-1445.0	NM_177611	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152539145-2	chr1	152538645	152539645	+	909.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 10 of 17)	intron (NM_016846, intron 10 of 17)	86072.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-101594458-4	chr3	101593941	101594941	+	909.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144900, intron 2 of 22)	intron (NM_144900, intron 2 of 22)	10266.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-40529091-4	chr3	40528584	40529584	+	909.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-6172.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75585307-4	chr11	75584803	75585803	+	909.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2776.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	1.5	5.5	0.0	0.5	3.0	2.0
Merged-chr2-24359511-3	chr2	24359005	24360005	+	909.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_LTR|LTR|ERV1	-8170.0	NM_001355231	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20673908-4	chr10	20673420	20674420	+	909.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 1 of 12)	intron (NM_013875, intron 1 of 12)	51158.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98299252-4	chr13	98298786	98299786	+	909.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17681.0	NM_145455	218490.0	Mm.371688	NM_145455	ENSMUSG00000021660	Btf3	1700054E11Rik	basic transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134555672-4	chr5	134555167	134556167	+	909.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3233.0	NM_009990	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40818910-4	chr19	40818405	40819405	+	909.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12374.0	NM_172839	240665.0	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50708412-4	chr15	50707915	50708915	+	909.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	180634.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0.0	0.0	2.5	2.5	0.0	3.0
Merged-chr15-86250468-3	chr15	86249973	86250973	+	909.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 4 of 12)	intron (NM_145476, intron 4 of 12)	-27202.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-30204571-4	chr6	30204053	30205053	+	909.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	27930.0	NR_038124	100463519.0	Mm.361139	NR_038124		BB283400	BF465573|Rncr4	expressed sequence BB283400	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89865105-4	chr3	89864624	89865624	+	909.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33754.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0.0	4.5	0.5	0.0	0.0	2.0
Merged-chr2-160451634-4	chr2	160451155	160452155	+	909.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84590.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-129649132-3	chr7	129648632	129649632	+	909.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57269.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51857307-4	chr11	51856829	51857829	+	909.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001357588, exon 1 of 13)	exon (NM_001357588, exon 1 of 13)	152.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34716002-4	chr1	34715511	34716511	+	909.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79801.0	NR_033627	241051.0	Mm.282827	NR_033627		AA619741	-	PHD finger protein 19 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145210808-4	chr4	145210349	145211349	+	909.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-15844.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75142806-5	chr7	75142329	75143329	+	909.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360573, intron 7 of 13)	intron (NM_001360573, intron 7 of 13)	77190.0	NM_001360575	64176.0	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93487090-4	chr10	93486434	93487434	+	909.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1834.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	3.0	7.5	5.5	14.5	9.0	18.5
Merged-chr11-50225950-6	chr11	50225523	50226523	+	909.513916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145926, intron 1 of 14)	intron (NM_145926, intron 1 of 14)	688.0	NM_145926	103534.0	Mm.86759	NM_145926	ENSMUSG00000036620	Mgat4b	AA407995|GnTIVb	mannoside acetylglucosaminyltransferase 4, isoenzyme B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-98168018-2	chr14	98167518	98168518	+	909.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038610, intron 1 of 10)	intron (NM_001038610, intron 1 of 10)	1747.0	NM_001038610	13134.0	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund family transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-97647778-3	chr1	97647286	97648286	+	909.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355071, intron 1 of 1)	intron (NM_001355071, intron 1 of 1)	13890.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-83079826-2	chr3	83079326	83080326	+	909.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER45B|DNA|hAT-Tip100	24288.0	NM_016784	53317.0	Mm.286349	NM_016784	ENSMUSG00000027998	Plrg1	AA958940|C80566|Tango4	pleiotropic regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5786858-2	chr11	5786358	5787358	+	909.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1625.0	NM_001146309	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	4.0	4.0	19.0	13.0	31.0	7.0
Merged-chr14-55111254-2	chr14	55110754	55111754	+	909.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177049, intron 3 of 5)	intron (NM_177049, intron 3 of 5)	-4661.0	NM_007455	11766.0	Mm.238879	NM_007455	ENSMUSG00000040701	Ap1g2	Adtg2|G2ad	adaptor protein complex AP-1, gamma 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11100110-2	chr8	11099610	11100610	+	909.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91680.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21600300-2	chr9	21599800	21600800	+	909.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7469.0	NM_138303	74766.0	Mm.475712	NM_138303	ENSMUSG00000032182	Yipf2	1300010K09Rik	Yip1 domain family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-92811369-2	chr9	92810869	92811869	+	909.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92653.0	NR_040770	331003.0	Mm.50805	NR_040770	ENSMUSG00000101734	4933400C23Rik	4933400C23	RIKEN cDNA 4933400C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80794592-2	chr12	80794092	80795092	+	909.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	B1_Mus1|SINE|Alu	4060.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113510167-2	chr13	113509667	113510667	+	909.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7323.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122209302-4	chr7	122208800	122209800	+	909.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10196.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87764277-2	chr3	87763777	87764777	+	909.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_152799, intron 1 of 24)	intron (NM_152799, intron 1 of 24)	4676.0	NM_001289600	73182.0	Mm.158962	NM_028460	ENSMUSG00000028073	Pear1	3110045G13Rik|Jedi-1|Megf12	platelet endothelial aggregation receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67505557-2	chr10	67505057	67506057	+	909.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32312.0	NM_010118	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73481940-2	chr15	73481440	73482440	+	909.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30620.0	NR_152151	105841.0	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-14523833-4	chr9	14523341	14524341	+	909.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23222.0	NM_023153	66070.0	Mm.245938	NM_023153	ENSMUSG00000004096	Cwc15	0610040D20Rik|2900052N06Rik|Ed1|c11orf5|mED1	CWC15 spliceosome-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-74362952-4	chr4	74362452	74363452	+	909.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356561, intron 16 of 20)	L1MDa|LINE|L1	111073.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88910853-2	chr6	88910353	88911353	+	909.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011906, exon 11 of 12)	exon (NM_011906, exon 11 of 12)	8602.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34167952-4	chr7	34167441	34168441	+	909.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016682, intron 1 of 16)	MIR|SINE|MIR	588.0	NM_016682	50995.0	Mm.27560	NM_016682	ENSMUSG00000052997	Uba2	AA986091|Arx|Sae2|UBA1|Ubl1a2|Uble1b	ubiquitin-like modifier activating enzyme 2	protein-coding	4.5	22.5	11.5	0.0	17.5	26.5
Merged-chr7-4065623-2	chr7	4065123	4066123	+	909.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2419.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117940760-2	chr11	117940260	117941260	+	909.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28606.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83632500-2	chr17	83632000	83633000	+	909.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153512)	promoter-TSS (NM_153512)	-605.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-98039874-2	chr3	98039374	98040374	+	909.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	26336.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166019508-2	chr2	166019008	166020008	+	909.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	MT2C_Mm|LTR|ERVL	26871.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	12.0	10.0	4.0	11.5	8.0	4.0
Merged-chr5-129995299-3	chr5	129994882	129995882	+	909.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357025, intron 8 of 10)	intron (NM_001357025, intron 8 of 10)	7667.0	NM_010368	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	2.5	0.0	6.5	2.0	7.0	5.5
Merged-chr16-20716485-8	chr16	20715988	20716988	+	909.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009900, exon 1 of 24)	5' UTR (NM_009900, exon 1 of 24)	148.0	NM_009900	12724.0	Mm.177761	NM_009900	ENSMUSG00000022843	Clcn2	AL118368|ClC-2|Clc2|nmf240	chloride channel, voltage-sensitive 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156840775-4	chr2	156840332	156841332	+	909.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291124, intron 1 of 3)	CpG	825.0	NM_173396	228839.0	Mm.315625	NM_173396	ENSMUSG00000062175	Tgif2	4921501K24|5730599O09Rik|C80753|C81206	TGFB-induced factor homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73370062-2	chr12	73369565	73370565	+	909.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_046013, intron 3 of 3)	intron (NR_046013, intron 3 of 3)	39498.0	NR_046013	380765.0	Mm.490476	NR_046013	ENSMUSG00000056359	D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	1.0	8.5	12.5	7.5	7.5	1.5
Merged-chr19-17359660-5	chr19	17359119	17360119	+	909.4933470000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	-2952.0	NM_173442	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	17.0	39.5	39.0	49.0	170.5	131.5
Merged-chr18-4352403-4	chr18	4351922	4352922	+	909.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 1 of 7)	intron (NM_007746, intron 1 of 7)	531.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11910685-5	chr19	11910159	11911159	+	909.4799800000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-1740.0	NM_172635	225929.0	Mm.42711	NM_172635	ENSMUSG00000046139	Patl1	AV312086|Pat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding	5.0	14.0	21.5	24.0	45.0	32.5
Merged-chr18-44387339-4	chr18	44386911	44387911	+	909.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027490, intron 1 of 10)	intron (NM_027490, intron 1 of 10)	6911.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	4.5	18.5	23.5	7.5	16.5	21.5
Merged-chr4-59821713-4	chr4	59821210	59822210	+	909.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	L1MA9|LINE|L1	16060.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-64065381-3	chr11	64064878	64065878	+	909.4722289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178379, intron 3 of 6)	intron (NM_178379, intron 3 of 6)	14094.0	NM_178379	70383.0	Mm.340211	NM_178379	ENSMUSG00000042148	Cox10	2410004F01Rik|AU042636	cytochrome c oxidase assembly protein 10	protein-coding	0.0	5.5	6.0	2.0	0.0	1.5
Merged-chr19-57273438-4	chr19	57272932	57273932	+	909.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045319)	promoter-TSS (NR_045319)	-528.0	NR_045319	78120.0	Mm.445892	NR_045319		4930449E18Rik	-	RIKEN cDNA 4930449E18 gene	ncRNA	5.5	24.0	21.0	7.5	19.0	28.5
Merged-chr8-34255192-4	chr8	34254703	34255703	+	909.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-88491.0	NR_105820	102465211.0		NR_105820	ENSMUSG00000098785	Mir6395	Gm27561|mmu-mir-6395	microRNA 6395	ncRNA	19.0	3.5	5.0	12.0	6.0	8.0
Merged-chr7-28014132-3	chr7	28013639	28014639	+	909.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001254951)	promoter-TSS (NM_001254951)	-24.0	NM_001254951	100043772.0	Mm.129275	NM_001100456	ENSMUSG00000096916	Zfp850	C130069I09Rik|Gm4636	zinc finger protein 850	protein-coding	23.0	28.0	9.5	11.5	16.0	13.0
Merged-chr5-125141219-4	chr5	125140665	125141665	+	909.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011424, intron 1 of 46)	intron (NM_011424, intron 1 of 46)	38049.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	3.0	5.5	7.5	7.0	12.0	8.5
Merged-chr4-34429845-5	chr4	34429321	34430321	+	909.4266359999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120794.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0.0	0.0	0.0	0.0	1.0	0.5
Merged-chr11-96766555-3	chr11	96765999	96766999	+	909.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11056.0	NM_028965	74479.0	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	161.0	305.5	266.0	154.0	286.5	274.5
Merged-chr16-72980029-4	chr16	72979523	72980523	+	909.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019413, intron 15 of 28)	intron (NM_019413, intron 15 of 28)	316874.0	NM_019413	19876.0	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74341475-7	chr17	74340970	74341970	+	909.414307	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357738, intron 1 of 15)	intron (NM_001357738, intron 1 of 15)	2483.0	NM_016962	50850.0	Mm.19804	NM_016962	ENSMUSG00000024068	Spast	Spg4|mKIAA1083	spastin	protein-coding	70.5	209.0	159.0	46.0	97.5	79.5
Merged-chr9-25569108-2	chr9	25568608	25569608	+	909.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 3 of 7)	RMER1B|Other|Other	87511.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69606667-4	chr3	69606153	69607153	+	909.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7693.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	36.0	87.5	80.0	42.0	88.5	51.5
Merged-chr17-67055861-3	chr17	67055358	67056358	+	909.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 5 of 32)	intron (NM_001357625, intron 5 of 32)	-29623.0	NR_049205	100885844.0		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	0.0	0.0	0.5	0.0	0.0	3.0
Merged-chr9-90198825-6	chr9	90198422	90199422	+	909.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003911, intron 23 of 23)	intron (NM_001003911, intron 23 of 23)	35944.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152259633-4	chr3	152259142	152260142	+	909.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199465, intron 1 of 12)	intron (NM_199465, intron 1 of 12)	6153.0	NM_001357206	68810.0	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76795018-4	chr15	76794529	76795529	+	909.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	23141.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	20.0	26.5	29.0	6.0	23.5	16.5
Merged-chr7-140948397-4	chr7	140947827	140948827	+	909.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_053088)	TTS (NM_053088)	1912.0	NM_053088	73835.0	Mm.389989	NM_053088	ENSMUSG00000025489	Ifitm5	1110003J06Rik|AW213665|Bril|DSPA1|Hrmp1|Hrtm1	interferon induced transmembrane protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115336909-4	chr5	115336380	115337380	+	909.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029645, intron 1 of 2)	B1_Mus1|SINE|Alu	4281.0	NM_029645	384281.0	Mm.229308	NM_029645	ENSMUSG00000029536	Gatc	2010003O18Rik	glutamyl-tRNA(Gln) amidotransferase, subunit C	protein-coding	17.0	24.0	17.5	20.0	12.5	6.0
Merged-chr7-104352857-4	chr7	104352319	104353319	+	909.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175677, intron 1 of 7)	URR1A|DNA|hAT-Charlie	530.0	NM_175677	319236.0	Mm.425502	NM_175677	ENSMUSG00000057143	Trim12c	9230105E10Rik|Trim12-2	tripartite motif-containing 12C	protein-coding	20.0	167.0	52.0	40.0	78.0	58.5
Merged-chr5-81107621-4	chr5	81107102	81108102	+	909.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198702, intron 2 of 27)	intron (NM_198702, intron 2 of 27)	86009.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	1.0	1.0	0.0	2.5	0.0	0.0
Merged-chr15-59389439-4	chr15	59388935	59389935	+	909.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 2 of 4)	intron (NM_001164604, intron 2 of 4)	15237.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67049466-4	chr10	67048966	67049966	+	909.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	44391.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-88725487-2	chr9	88724987	88725987	+	909.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007536, intron 1 of 1)	intron (NM_007536, intron 1 of 1)	-5689.0	NM_001128601	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	4.5	1.0	1.0	0.0	0.0	0.0
Merged-chr1-155144905-2	chr1	155144405	155145405	+	909.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008209, intron 1 of 5)	LTR33|LTR|ERVL	1909.0	NM_001355063	15064.0	Mm.7580	NM_008209	ENSMUSG00000026471	Mr1	H2ls	major histocompatibility complex, class I-related	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92693177-4	chr1	92692639	92693639	+	909.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44298.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17880336-1	chr17	17879836	17880836	+	909.3333130000001	f1_c57bl6.idr	intron (NM_013521, intron 1 of 1)	B4A|SINE|B4	3603.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	19.0	64.0	29.0	14.5	32.5	22.5
Merged-chr12-110682050-3	chr12	110681544	110682544	+	909.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025488, intron 1 of 5)	intron (NM_025488, intron 1 of 5)	575.0	NM_025488	66323.0	Mm.273316	NM_025488	ENSMUSG00000056508	1700001K19Rik	-	RIKEN cDNA 1700001K19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70595172-3	chr8	70594664	70595664	+	909.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023627, exon 4 of 11)	exon (NM_023627, exon 4 of 11)	683.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	6.0	0.5	2.5	4.5	0.0	4.5
Merged-chr11-53470063-3	chr11	53469565	53470565	+	909.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10130.0	NM_183173	237761.0	Mm.145208	NM_183173	ENSMUSG00000044352	Sowaha	A830006N08Rik|Ankrd43	sosondowah ankyrin repeat domain family member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119663198-4	chr4	119662700	119663700	+	909.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-4255.0	NM_008191	14916.0	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17249279-4	chr16	17248796	17249796	+	909.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178922, intron 1 of 2)	intron (NM_178922, intron 1 of 2)	15709.0	NM_178922	58180.0	Mm.261602	NM_178922	ENSMUSG00000050240	Hic2	AA409108|HRG22|mKIAA1020	hypermethylated in cancer 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86585154-3	chr11	86584656	86585656	+	909.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029738)	promoter-TSS (NR_029738)	-998.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4729209-3	chr16	4728715	4729715	+	909.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136066, intron 1 of 5)	RSINE1|SINE|B4	2854.0	NM_001136066	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165652248-2	chr1	165651748	165652748	+	909.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 5 of 5)	intron (NM_001038846, intron 5 of 5)	-17707.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84677488-2	chr18	84676988	84677988	+	909.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_023149, intron 4 of 11)	intron (NM_023149, intron 4 of 11)	4571.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-16669931-4	chr11	16669443	16670443	+	909.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82260.0	NM_207655	13649.0	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	2.5	4.0	8.5	3.0	5.0	1.5
Merged-chr14-32167532-3	chr14	32167056	32168056	+	909.2999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019744, intron 1 of 9)	intron (NM_019744, intron 1 of 9)	1767.0	NM_019744	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-104647287-4	chr7	104646779	104647779	+	909.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_147049)	promoter-TSS (NM_147049)	26.0	NM_147049	259051.0	Mm.223432	NM_147049	ENSMUSG00000070421	Olfr658	MOR34-5	olfactory receptor 658	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr9-109095588-3	chr9	109095109	109096109	+	909.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172775, exon 1 of 38)	5' UTR (NM_172775, exon 1 of 38)	173.0	NM_172775	235611.0	Mm.53862	NM_172775	ENSMUSG00000053646	Plxnb1	2900002G15Rik|AU042020|mKIAA0407	plexin B1	protein-coding	0.0	8.0	2.0	1.5	0.0	1.5
Merged-chr5-149284934-4	chr5	149284416	149285416	+	909.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009663, intron 3 of 4)	MTD|LTR|ERVL-MaLR	19912.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-91506837-3	chr7	91506351	91507351	+	909.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011807, intron 2 of 22)	intron (NM_011807, intron 2 of 22)	416065.0	NM_011807	23859.0	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs large MAGUK scaffold protein 2	protein-coding	0.0	0.0	0.0	0.0	2.5	1.5
Merged-chr13-93898734-3	chr13	93898233	93899233	+	909.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009712, intron 6 of 7)	intron (NM_009712, intron 6 of 7)	107956.0	NR_049198	100885837.0		NR_049198	ENSMUSG00000093480	Mir5624	Gm25075|mir-5624|mmu-mir-5624	microRNA 5624	ncRNA	2.0	0.0	3.5	1.0	2.5	9.0
Merged-chr5-140370611-3	chr5	140370109	140371109	+	909.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172277, intron 1 of 10)	intron (NM_172277, intron 1 of 10)	18699.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-141033651-4	chr2	141033155	141034155	+	909.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 5 of 18)	MLT1C|LTR|ERVL-MaLR	-362179.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4204140-4	chr19	4203643	4204643	+	909.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2540.0	NM_011237	19367.0	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136979600-4	chr6	136979114	136980114	+	909.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25091.0	NM_023898	78600.0	Mm.290622	NM_023898	ENSMUSG00000064330	Pde6h	A930033D18Rik|PDEgamma	phosphodiesterase 6H, cGMP-specific, cone, gamma	protein-coding	0.0	1.0	6.0	3.5	0.0	5.5
Merged-chr16-23136762-4	chr16	23136254	23137254	+	909.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9024.0	NM_145480	106344.0	Mm.386835	NM_145480	ENSMUSG00000022881	Rfc4	A1|AI894123|AU040575|RFC37	replication factor C (activator 1) 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-41765893-4	chr15	41765345	41766345	+	909.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 3 of 17)	L1MA4|LINE|L1	-23150.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-9602384-4	chr11	9601992	9602992	+	909.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 55 of 61)	intron (NM_178259, intron 55 of 61)	410550.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	0.0	0.0	0.0	1.0	6.0	2.0
Merged-chr2-93624877-4	chr2	93624369	93625369	+	909.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17565.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	0.0	2.0	1.0	0.0	0.0	0.0
Merged-chr15-84916794-3	chr15	84916292	84917292	+	909.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVL-B4-int|LTR|ERVL	-6636.0	NM_016714	18141.0	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65441845-3	chr3	65441295	65442295	+	909.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER102b|DNA|hAT-Charlie	-49242.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-82933829-3	chr4	82933313	82934313	+	909.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_154662, intron 26 of 35)	intron (NR_154662, intron 26 of 35)	-48662.0	NM_009887	12622.0	Mm.6780	NM_009887	ENSMUSG00000038192	Cer1	Cerl|Cerl1|Cerr1|cer-1	cerberus 1, DAN family BMP antagonist	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82099412-3	chr11	82098922	82099922	+	909.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-2423.0	NM_011331	20293.0	Mm.867	NM_011331	ENSMUSG00000035352	Ccl12	MCP-5|Scya12	chemokine (C-C motif) ligand 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87451636-3	chr6	87451119	87452119	+	909.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22625.0	NM_009756	12154.0	Mm.483321	NM_009756	ENSMUSG00000030046	Bmp10	b2b2711Clo	bone morphogenetic protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82571622-4	chr11	82571126	82572126	+	909.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61727.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87578427-4	chr11	87577921	87578921	+	909.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361936)	promoter-TSS (NM_001361936)	32.0	NM_001284398	18952.0	Mm.2214	NM_011129	ENSMUSG00000020486	Sept4	ARTS|Bh5|Pnutl2	septin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-33928433-4	chr8	33927958	33928958	+	909.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042675, intron 1 of 6)	intron (NM_001042675, intron 1 of 6)	1405.0	NM_019733	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	0.0	4.0	1.0	2.5	0.5	8.5
Merged-chr11-115701782-2	chr11	115701282	115702282	+	909.2000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_008163, intron 1 of 5)	B2_Mm1t|SINE|B2	-1854.0	NM_001313936	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-186549405-3	chr1	186548903	186549903	+	909.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131124, intron 1 of 2)	L1MB3|LINE|L1	9278.0	NR_131124	320449.0	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-49472874-3	chr2	49472369	49473369	+	909.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172663, intron 1 of 13)	ORR1D2|LTR|ERVL-MaLR	21383.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55239409-3	chr1	55238924	55239924	+	909.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175439, exon 1 of 1)	3' UTR (NM_175439, exon 1 of 1)	2247.0	NM_175439	212679.0	Mm.19223	NM_175439	ENSMUSG00000046994	Mars2	C730026E21Rik|MetRS	methionine-tRNA synthetase 2 (mitochondrial)	protein-coding	1.0	6.0	0.0	1.5	0.0	0.0
Merged-chr11-115929966-4	chr11	115929444	115930444	+	909.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130454, intron 2 of 18)	intron (NM_130454, intron 2 of 18)	3548.0	NM_130454	170472.0	Mm.379351	NM_130454	ENSMUSG00000020752	Recql5	RecQ5|Recq5b|Recql5b	RecQ protein-like 5	protein-coding	3.0	4.0	3.0	4.5	12.0	3.5
Merged-chr9-20742442-2	chr9	20741942	20742942	+	909.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357639, intron 1 of 5)	intron (NM_001357639, intron 1 of 5)	3854.0	NM_001357639	244723.0	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59675770-4	chr13	59675245	59676245	+	909.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027307)	promoter-TSS (NM_027307)	39.0	NM_001035122	105348.0	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	0.0	6.0	11.5	2.5	1.0	6.0
Merged-chr4-102640192-2	chr4	102639696	102640696	+	909.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50353.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.5	9.5	0.0	3.0	2.5	0.0
Merged-chr7-30417869-6	chr7	30417407	30418407	+	909.138916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011662)	TTS (NM_011662)	1947.0	NM_011827	23900.0	Mm.379050	NM_011827	ENSMUSG00000064109	Hcst	DAP10|KAP10	hematopoietic cell signal transducer	protein-coding	50.0	141.0	77.5	37.0	97.0	69.0
Merged-chr4-55366216-4	chr4	55365723	55366723	+	909.1333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009011, intron 1 of 9)	MTC|LTR|ERVL-MaLR	16181.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114168512-4	chr7	114167996	114168996	+	909.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER3|DNA|hAT-Charlie	-50715.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	3.5	4.0	0.0	4.5	1.0	5.5
Merged-chr12-73905198-3	chr12	73904706	73905706	+	909.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313920, intron 1 of 14)	intron (NM_001313920, intron 1 of 14)	-2661.0	NM_010431	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-61052162-3	chr19	61051647	61052647	+	909.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 4 of 15)	intron (NM_018869, intron 4 of 15)	88693.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	17.0	42.5	23.0	38.5	20.5	32.0
Merged-chr7-122329296-3	chr7	122328791	122329791	+	909.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	40166.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61151595-3	chr10	61151082	61152082	+	909.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3898.0	NM_001316674	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-123063068-4	chr10	123062553	123063553	+	909.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163024, intron 1 of 34)	intron (NM_001163024, intron 1 of 34)	13452.0	NM_001163024	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-65097240-4	chr13	65096748	65097748	+	909.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083901, intron 2 of 12)	ORR1D2-int|LTR|ERVL-MaLR	15734.0	NM_001083901	66631.0	Mm.239196	NM_133680	ENSMUSG00000038212	Mfsd14b	5730414C17Rik|AU045608|AW539692|Hiatl1	major facilitator superfamily domain containing 14B	protein-coding	1.0	1.5	2.0	4.5	2.0	0.0
Merged-chr3-59210135-4	chr3	59209643	59210643	+	909.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028808, exon 2 of 2)	exon (NM_028808, exon 2 of 2)	739.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54705457-4	chr6	54704976	54705976	+	909.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23852.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	3.5	0.0	4.5	0.0	0.0	7.5
Merged-chr10-121297559-4	chr10	121297036	121298036	+	909.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361015, intron 6 of 12)	intron (NM_001361015, intron 6 of 12)	13860.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	7.5	6.0	8.0	3.0	5.0	19.5
Merged-chr16-33937034-4	chr16	33936534	33937534	+	909.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	30004.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76690452-4	chr14	76689956	76690956	+	909.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12888.0	NR_015485	73272.0	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA	1.5	0.0	1.5	4.5	5.0	5.0
Merged-chr17-74601375-4	chr17	74600894	74601894	+	909.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007566, intron 19 of 72)	intron (NM_007566, intron 19 of 72)	73099.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53228673-4	chr4	53228173	53229173	+	909.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17523.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103359859-4	chr11	103359359	103360359	+	909.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_183288, exon 3 of 3)	3' UTR (NM_183288, exon 3 of 3)	3833.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-50906090-3	chr3	50905553	50906553	+	909.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-318394.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.0	1.5	0.0	0.5	1.5	0.0
Merged-chr7-101051981-4	chr7	101051436	101052436	+	909.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39883.0	NM_001302346	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-4028048-4	chr15	4027519	4028519	+	909.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028266)	promoter-TSS (NR_028266)	-613.0	NR_028266	414066.0	Mm.394461	NR_028266		BC037032	-	cDNA Sequence BC037032	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55687708-4	chr16	55687205	55688205	+	909.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134433.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74396672-4	chr1	74396182	74397182	+	909.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153088, exon 7 of 7)	3' UTR (NM_153088, exon 7 of 7)	2372.0	NR_029743	387219.0		NR_029743	ENSMUSG00000065468	Mir26b	Mirn26b|mir-26b|mmu-mir-26b	microRNA 26b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60933648-4	chr10	60933157	60934157	+	909.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033616, intron 1 of 2)	intron (NR_033616, intron 1 of 2)	4475.0	NR_033616	73616.0	Mm.159038	NR_033616	ENSMUSG00000037247	Pldi	1700125F08Rik|Poldi	polymorphic derived intron containing	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73737132-3	chr12	73736609	73737609	+	909.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 10 of 13)	intron (NM_008856, intron 10 of 13)	152313.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59454239-1	chr4	59453739	59454739	+	909.0	f0_balb.idr	Intergenic	Intergenic	-15606.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	3.5	5.0	3.0	0.0	11.5	1.5
Merged-chr10-81360426-2	chr10	81359926	81360926	+	909.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028657, intron 2 of 9)	intron (NM_028657, intron 2 of 9)	2935.0	NM_028657	73822.0	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1|gr	major facilitator superfamily domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53239793-2	chr15	53239293	53240293	+	909.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	106390.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80834584-2	chr7	80834067	80835067	+	909.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-27541.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	7.0	20.0	4.5	26.5	23.0	2.5
Merged-chr1-91243589-2	chr1	91243089	91244089	+	909.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6715.0	NM_001355763	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr9-121995933-3	chr9	121995378	121996378	+	909.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_153540, exon 1 of 2)	5' UTR (NM_153540, exon 1 of 2)	148.0	NM_001289559	215494.0	Mm.402151	NM_153540	ENSMUSG00000066235	Pomgnt2	Ago61|C85492|Gtdc2	protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-133623-1	chr1	133123	134123	+	909.0	f1_c57bl6.idr	Intergenic	Intergenic	3537875.0	NM_001011874	497097.0	Mm.454496	NM_001011874	ENSMUSG00000051951	Xkr4	AY534250|Gm210|XRG4|mKIAA1889	X-linked Kx blood group related 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67989782-3	chr15	67989286	67990286	+	909.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	269070.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	12.5	9.5	8.5	11.5	9.0	9.0
Merged-chr14-55795926-2	chr14	55795426	55796426	+	909.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7069.0	NM_001164108	56532.0	Mm.46612	NM_019955	ENSMUSG00000022221	Ripk3	2610528K09Rik|AW107945|Rip3	receptor-interacting serine-threonine kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80099196-2	chr10	80098696	80099696	+	909.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359637, intron 1 of 3)	intron (NM_001359637, intron 1 of 3)	1991.0	NM_001359635	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10241449-2	chr19	10240949	10241949	+	909.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033481)	promoter-TSS (NM_001033481)	-701.0	NM_001033481	225908.0	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77449499-2	chr11	77448999	77449999	+	909.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001291190, exon 13 of 14)	exon (NM_001291190, exon 13 of 14)	-14414.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47777957-2	chr17	47777447	47778447	+	909.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	B1_Mus2|SINE|Alu	-7797.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.0	5.0	1.0	2.5	4.0	6.0
Merged-chr12-85665027-2	chr12	85664527	85665527	+	909.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21693.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99309171-3	chr5	99308700	99309700	+	909.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-56273.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	11.5	11.5	3.0	16.0	42.5	15.0
Merged-chr7-68059963-3	chr7	68059462	68060462	+	909.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	107705.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95836444-2	chr11	95835944	95836944	+	909.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025659, intron 2 of 7)	intron (NM_025659, intron 2 of 7)	-5851.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11330436-2	chr19	11329936	11330936	+	909.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027836, intron 2 of 6)	intron (NM_027836, intron 2 of 6)	4259.0	NM_001276398	109225.0	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53051482-2	chr4	53050982	53051982	+	909.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 34 of 49)	B3|SINE|B2	39602.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54899533-2	chr18	54899033	54900033	+	909.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175751, exon 5 of 10)	exon (NM_175751, exon 5 of 10)	90647.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-128614676-2	chr1	128614146	128615146	+	909.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22347.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	60.5	49.0	42.5	41.5	79.0	43.5
Merged-chr9-77966421-1	chr9	77965921	77966921	+	909.0	f0_balb.idr	intron (NM_134255, intron 3 of 7)	intron (NM_134255, intron 3 of 7)	49056.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-51985674-4	chr16	51985172	51986172	+	909.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153657, exon 2 of 5)	non-coding (NR_153657, exon 2 of 5)	1615.0	NR_153657	629091.0	Mm.364775	NR_153657		Gm29686	-	predicted gene, 29686	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-96512116-2	chr13	96511616	96512616	+	909.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_144624, intron 2 of 10)	intron (NR_144624, intron 2 of 10)	7071.0	NR_144623	27015.0	Mm.89926	NM_012048	ENSMUSG00000021668	Polk	DINP|Dinb1	polymerase (DNA directed), kappa	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83670159-1	chr8	83669659	83670659	+	909.0	f1_c57bl6.idr	TTS (NM_013641)	TTS (NM_013641)	3515.0	NM_013641	19216.0	Mm.213000	NM_013641	ENSMUSG00000019464	Ptger1	EP1|Ptgerep1	prostaglandin E receptor 1 (subtype EP1)	protein-coding	6.5	3.5	5.0	5.0	5.5	3.0
Merged-chr19-3765780-2	chr19	3765280	3766280	+	909.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1641.0	NM_001167889	225888.0	Mm.278578	NM_144871	ENSMUSG00000045098	Kmt5b	AA117471|C630029K18Rik|Suv4-20h1|Suv420h1	lysine methyltransferase 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26883934-3	chr8	26883446	26884446	+	909.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59523.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122647639-3	chr5	122647101	122648101	+	909.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038845, intron 1 of 12)	intron (NM_001038845, intron 1 of 12)	-2823.0	NM_001284402	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32392957-1	chr4	32392457	32393457	+	909.0	f0_balb.idr	Intergenic	Lx9|LINE|L1	-24478.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11601481-1	chr19	11600981	11601981	+	909.0	f1_c57bl6.idr	intron (NM_026835, intron 3 of 6)	intron (NM_026835, intron 3 of 6)	3323.0	NM_026835	68774.0	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	48.0	95.5	67.0	12.0	25.5	29.0
Merged-chr10-99581309-4	chr10	99580797	99581797	+	909.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27874.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81847968-2	chr15	81847468	81848468	+	909.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_020507)	TTS (NM_020507)	10358.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	13.5	2.5	16.0	2.5	6.0	5.5
Merged-chr13-89838858-1	chr13	89838358	89839358	+	909.0	f0_balb.idr	Intergenic	Intergenic	-96346.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	21.0	26.0	24.5	32.5	43.5	25.5
Merged-chr5-138831971-4	chr5	138831463	138832463	+	908.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	11883.0	NM_001195128	384244.0	Mm.485002	NM_001195128	ENSMUSG00000094504	Gm5294	EG384244	predicted gene 5294	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-75529593-4	chr12	75529092	75530092	+	908.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012024, intron 2 of 13)	intron (NM_012024, intron 2 of 13)	66608.0	NM_012024	26932.0	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80059341-4	chr7	80058774	80059774	+	908.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	15983.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	5.5	15.0	4.5	17.0	11.0	5.5
Merged-chr5-151142400-4	chr5	151141901	151142901	+	908.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153382, intron 1 of 13)	intron (NR_153382, intron 1 of 13)	47792.0	NM_001163493	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-127359512-4	chr6	127359045	127360045	+	908.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51578.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118762636-4	chr2	118762082	118763082	+	908.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001982)	promoter-TSS (NM_001001982)	79.0	NM_001001982	214239.0	Mm.379342	NM_001001982	ENSMUSG00000045838	A430105I19Rik	Ccdc9b|Gm353	RIKEN cDNA A430105I19 gene	protein-coding	4.0	6.5	1.0	4.0	2.0	4.5
Merged-chr5-22549428-4	chr5	22548940	22549940	+	908.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102315)	promoter-TSS (NR_102315)	891.0	NM_011959	26429.0	Mm.412217	NM_011959	ENSMUSG00000029012	Orc5	AL033327|MmORC5|Orc5l	origin recognition complex, subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124574115-8	chr2	124573627	124574627	+	908.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-36169.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21728070-4	chr16	21727574	21728574	+	908.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33409.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106742437-4	chr11	106741954	106742954	+	908.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8772.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-70251396-4	chr10	70250923	70251923	+	908.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025807, intron 1 of 5)	intron (NM_025807, intron 1 of 5)	6147.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46849567-4	chr8	46849063	46850063	+	908.912476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109818.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78090242-4	chr10	78089752	78090752	+	908.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20884.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-63924535-6	chr15	63923904	63924904	+	908.904785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_029414, intron 10 of 10)	intron (NR_029414, intron 10 of 10)	9943.0	NR_029414	74460.0	Mm.390801	NR_029414	ENSMUSG00000100127	Gsdmcl-ps	4933426G20Rik	gasdermin C-like, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73540667-2	chr7	73540167	73541167	+	908.900024	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037569, exon 5 of 5)	non-coding (NR_037569, exon 5 of 5)	1079.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35872579-4	chr16	35872070	35873070	+	908.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1188.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105998308-3	chr1	105997960	105998960	+	908.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122675, intron 1 of 12)	intron (NM_001122675, intron 1 of 12)	8054.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69060269-4	chr3	69059774	69060774	+	908.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15532.0	NM_025863	66949.0	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	3.0	0.5	3.5	2.5	2.5	0.0
Merged-chr4-105254508-4	chr4	105253979	105254979	+	908.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97132.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	19.0	67.0	32.0	24.0	47.0	44.0
Merged-chr9-20966950-4	chr9	20966455	20967455	+	908.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010333, exon 2 of 2)	3' UTR (NM_010333, exon 2 of 2)	-7067.0	NM_001199432	13433.0	Mm.128580	NM_010066	ENSMUSG00000004099	Dnmt1	Cxxc9|Dnmt|Dnmt1o|MCMT|MTase|Met-1|Met1|MommeD2|m.MmuI	DNA methyltransferase (cytosine-5) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43446405-4	chr7	43445899	43446899	+	908.841675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_075104, intron 1 of 5)	intron (NR_075104, intron 1 of 5)	2327.0	NR_075104	110826.0	Mm.30200	NM_026695	ENSMUSG00000004610	Etfb	0610009I16Rik|2810441H06Rik	electron transferring flavoprotein, beta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120035248-2	chr4	120034748	120035748	+	908.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-125958.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112874292-2	chr12	112873792	112874792	+	908.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13376.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-30137314-4	chr17	30136809	30137809	+	908.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151442, intron 2 of 3)	L1M3|LINE|L1	132270.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-33393473-4	chr14	33392951	33393951	+	908.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310452, intron 4 of 10)	MTD|LTR|ERVL-MaLR	17573.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31298820-4	chr5	31298319	31299319	+	908.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144909, intron 3 of 18)	intron (NM_144909, intron 3 of 18)	1238.0	NM_144909	231103.0	Mm.100043	NM_144909	ENSMUSG00000059434	Gckr	GKRP	glucokinase regulatory protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35745348-3	chr7	35744845	35745845	+	908.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178704, intron 3 of 18)	intron (NM_178704, intron 3 of 18)	9109.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	0.0	1.5	1.0	0.0	6.0	0.5
Merged-chr1-120449812-4	chr1	120449316	120450316	+	908.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55208.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-33901891-4	chr1	33901391	33902391	+	908.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 1 of 6)	Lx9|LINE|L1	5730.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10240181-3	chr19	10239637	10240637	+	908.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033481, intron 1 of 25)	intron (NM_001033481, intron 1 of 25)	611.0	NM_001033481	225908.0	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128909271-3	chr10	128908777	128909777	+	908.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282966)	promoter-TSS (NM_001282966)	-68.0	NM_001282966	12512.0	Mm.371552	NM_007653	ENSMUSG00000025351	Cd63	C75951|ME491|Tspan30	CD63 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80194086-3	chr18	80193586	80194586	+	908.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_131039)	TTS (NR_131039)	6533.0	NM_199197	68731.0	Mm.186936	NM_199197	ENSMUSG00000024570	Rbfa	1110032A13Rik|AI595940	ribosome binding factor A	protein-coding	5.0	11.0	6.0	0.0	13.0	7.0
Merged-chr7-4099018-3	chr7	4098529	4099529	+	908.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033568, intron 5 of 8)	ORR1B1|LTR|ERVL-MaLR	-20501.0	NM_001109765	57776.0	Mm.29729	NM_021324	ENSMUSG00000030428	Ttyh1	4930459B04Rik|6330408P11Rik|TTY1|mTTY1|tty	tweety family member 1	protein-coding	10.0	10.5	8.5	6.5	2.5	2.0
Merged-chr8-39308336-3	chr8	39307846	39308846	+	908.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_044988, intron 2 of 3)	intron (NR_044988, intron 2 of 3)	10366.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	5.5	2.0	10.0	22.5	32.5	44.5
Merged-chr10-128891033-3	chr10	128890729	128891729	+	908.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010272, intron 1 of 2)	CpG	489.0	NM_010272	14561.0	Mm.299218	NM_010272	ENSMUSG00000025352	Gdf11	BMP-11|Bmp11	growth differentiation factor 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-41096256-3	chr12	41095751	41096751	+	908.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 3 of 6)	ORR1D2|LTR|ERVL-MaLR	72161.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67300723-4	chr15	67300190	67301190	+	908.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045140, intron 5 of 8)	L1M4|LINE|L1	73921.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	13.5	10.5	20.0	13.0	10.0	20.0
Merged-chr2-127507255-2	chr2	127506755	127507755	+	908.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_019789, intron 2 of 8)	intron (NM_019789, intron 2 of 8)	14137.0	NM_001291005	56461.0	Mm.315292	NM_019789	ENSMUSG00000079056	Kcnip3	4933407H12Rik|AI413860|Csen|DREAM|KChIP3|R74849	Kv channel interacting protein 3, calsenilin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38736526-4	chr6	38736058	38737058	+	908.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 7 of 14)	intron (NM_010433, intron 7 of 14)	73489.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85813696-2	chr11	85813196	85814196	+	908.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_077059, intron 1 of 4)	intron (NR_077059, intron 1 of 4)	18692.0	NR_077059	69909.0	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18997616-3	chr2	18997127	18998127	+	908.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024323)	promoter-TSS (NR_024323)	494.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54750749-3	chr14	54750248	54751248	+	908.711121	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	31138.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	28.0	86.5	46.5	20.0	41.0	49.5
Merged-chr2-120111050-4	chr2	120110558	120111558	+	908.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 3 of 5)	MIR|SINE|MIR	43517.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	25.5	33.0	10.0	16.0	47.0	24.5
Merged-chr10-121373145-4	chr10	121372654	121373654	+	908.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 2 of 13)	MTD|LTR|ERVL-MaLR	8064.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	25.0	10.0	6.0	9.5	14.0	15.0
Merged-chr1-45917306-4	chr1	45916866	45917866	+	908.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016917, intron 5 of 7)	intron (NM_016917, intron 5 of 7)	8228.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-103120477-4	chr4	103119913	103120913	+	908.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039081, intron 1 of 12)	intron (NM_001039081, intron 1 of 12)	1023.0	NM_001039081	71148.0	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108146626-4	chr6	108146131	108147131	+	908.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145937, intron 6 of 8)	intron (NM_145937, intron 6 of 8)	38952.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	2.0	7.5	5.0	0.0	15.0	5.0
Merged-chr2-32534520-4	chr2	32534042	32535042	+	908.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153560)	promoter-TSS (NM_153560)	-817.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101694791-3	chr13	101694276	101695276	+	908.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 7 of 15)	intron (NM_001077495, intron 7 of 15)	-2146.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90052393-1	chr7	90051893	90052893	+	908.6666869999999	f0_c57.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	23234.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	0.0	4.5	12.0	0.0	0.0	11.5
Merged-chr9-61369031-3	chr9	61368526	61369526	+	908.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3340.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98052757-3	chr11	98052246	98053246	+	908.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146028, intron 1 of 10)	CpG	716.0	NM_146028	217154.0	Mm.181008	NM_146028	ENSMUSG00000017400	Stac2	24b2|24b2/STAC2|AW240854	SH3 and cysteine rich domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75073132-4	chr11	75072603	75073603	+	908.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 13 of 18)	RSINE1|SINE|B4	-7112.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66250349-3	chr14	66249861	66250861	+	908.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	30691.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88009401-3	chr6	88008900	88009900	+	908.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009005, intron 3 of 5)	intron (NM_009005, intron 3 of 5)	10395.0	NM_001293655	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	4.5	2.0	5.5	0.5	0.0	3.0
Merged-chr2-167417809-3	chr2	167417308	167418308	+	908.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3902.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-118559722-4	chr1	118559212	118560212	+	908.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359330, intron 30 of 39)	intron (NM_001359330, intron 30 of 39)	-68233.0	NM_023755	81879.0	Mm.24621	NM_023755	ENSMUSG00000026380	Tfcp2l1	1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1	transcription factor CP2-like 1	protein-coding	13.5	23.5	23.0	7.0	6.5	13.0
Merged-chr13-52100890-2	chr13	52100390	52101390	+	908.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_045061, intron 3 of 7)	intron (NR_045061, intron 3 of 7)	4149.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119863071-4	chr11	119862598	119863598	+	908.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028898, intron 20 of 33)	intron (NM_028898, intron 20 of 33)	-19191.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127566107-2	chr10	127565595	127566595	+	908.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 41 of 88)	intron (NM_008512, intron 41 of 88)	-31536.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	1.5	9.5	6.0	1.5	3.0	3.5
Merged-chr18-50016920-4	chr18	50016340	50017340	+	908.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	-14144.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	20.0	24.0	12.0	19.0	4.0	17.5
Merged-chr12-103425134-2	chr12	103424634	103425634	+	908.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_020494, intron 1 of 8)	ID_B1|SINE|B4	646.0	NM_001159502	27225.0	Mm.3935	NM_020494	ENSMUSG00000041645	Ddx24	1700055J08Rik|2510027P10Rik|AI649272	DEAD (Asp-Glu-Ala-Asp) box polypeptide 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44581450-4	chr11	44580965	44581965	+	908.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4852.0	NR_126460	75389.0	Mm.261421	NR_126460	ENSMUSG00000086501	4930597A21Rik	-	RIKEN cDNA 4930597A21 gene	ncRNA	5.0	7.5	1.0	7.5	12.0	19.0
Merged-chr1-138973755-4	chr1	138973308	138974308	+	908.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	-3849.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5382533-4	chr2	5381963	5382963	+	908.607178	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030601, intron 1 of 1)	intron (NR_030601, intron 1 of 1)	3073.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182528720-4	chr1	182528211	182529211	+	908.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-11101.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-45876471-4	chr5	45875971	45876971	+	908.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-18931.0	NM_001359873	209707.0	Mm.71498	NM_172153	ENSMUSG00000015882	Lcorl	Mlr1	ligand dependent nuclear receptor corepressor-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-48595868-3	chr1	48595359	48596359	+	908.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-648757.0	NR_151585	442837.0	Mm.337149	NM_001002792	ENSMUSG00000051616	C230029F24Rik	-	RIKEN cDNA C230029F24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-99179670-4	chr4	99179164	99180164	+	908.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14270.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	23.0	50.5	43.5	3.0	10.5	10.0
Merged-chr13-24937538-4	chr13	24937048	24938048	+	908.5750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_102323, exon 1 of 2)	non-coding (NR_102323, exon 1 of 2)	113.0	NM_172532	214579.0	Mm.393311	NM_172532	ENSMUSG00000035936	Aldh5a1	6330403E24Rik|Ahd-1|Ahd1|D630032B01Rik|SSADH|Ssdh1	aldhehyde dehydrogenase family 5, subfamily A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-113663666-4	chr9	113663156	113664156	+	908.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164678, intron 12 of 17)	B4A|SINE|B4	44603.0	NM_001164678	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122132268-4	chr2	122131696	122132696	+	908.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026251, intron 2 of 17)	RLTR20C1_MM|LTR|ERVK	-13810.0	NM_145531	214585.0	Mm.222303	NM_145531	ENSMUSG00000033396	Spg11	6030465E24Rik|A330015I11|C530005A01Rik	SPG11, spatacsin vesicle trafficking associated	protein-coding	2.0	10.0	13.0	8.0	9.5	8.0
Merged-chr15-103339547-4	chr15	103339038	103340038	+	908.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013866, intron 1 of 7)	intron (NM_013866, intron 1 of 7)	548.0	NM_013866	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88034569-3	chr6	88034069	88035069	+	908.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293652, intron 1 of 7)	intron (NM_001293652, intron 1 of 7)	10448.0	NM_001293653	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	6.0	13.5	10.5	10.5	13.5	20.0
Merged-chr18-76238798-3	chr18	76238294	76239294	+	908.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2907.0	NM_010754	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	18.0	20.5	27.0	2.0	5.5	7.0
Merged-chr9-20901636-3	chr9	20901123	20902123	+	908.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3033.0	NM_016876	53356.0	Mm.427309	NM_016876	ENSMUSG00000070319	Eif3g	44kDa|D0Jmb4|Eif3s4|TU-189B2|eIF3-p44|p44	eukaryotic translation initiation factor 3, subunit G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-47947762-3	chr8	47947256	47948256	+	908.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133791, intron 1 of 22)	intron (NM_133791, intron 1 of 22)	42795.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-125015937-4	chr4	125015449	125016449	+	908.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14065.0	NM_145552	230737.0	Mm.90760	NM_145552	ENSMUSG00000028869	Gnl2	BC003262|HUMAUANTIG|Ngp-1	guanine nucleotide binding protein-like 2 (nucleolar)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72552157-4	chr5	72551616	72552616	+	908.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153351, intron 4 of 21)	intron (NR_153351, intron 4 of 21)	7529.0	NM_001359837	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51328667-4	chr3	51328165	51329165	+	908.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 1 of 9)	intron (NM_023502, intron 1 of 9)	11979.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17463719-7	chr6	17463222	17464222	+	908.507935	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008591)	promoter-TSS (NM_008591)	-235.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	0.0	0.5	0.0	0.0	8.0	3.0
Merged-chr7-118494623-4	chr7	118494119	118495119	+	908.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2644.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	1.5	5.5	3.5	7.5	20.0	13.5
Merged-chr16-11006915-4	chr16	11006427	11007427	+	908.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1971.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55975684-2	chr16	55975184	55976184	+	908.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173026, intron 1 of 10)	intron (NM_173026, intron 1 of 10)	-1067.0	NR_027965	66391.0	Mm.472722	NM_133677	ENSMUSG00000102101	Zbtb11os1	2310061J03Rik	zinc finger and BTB domain containing 11, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8588488-2	chr15	8588057	8589057	+	908.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	122250.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-69246888-2	chr10	69246388	69247388	+	908.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252638, intron 2 of 11)	intron (NM_001252638, intron 2 of 11)	33694.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81352567-2	chr10	81352067	81353067	+	908.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2110.0	NM_001163166	15353.0	Mm.38474	NM_010440	ENSMUSG00000020232	Hmg20b	AW610687|BRAF35|Hmgx2|Hmgxb2|Smarce1r	high mobility group 20B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120111854-2	chr10	120111354	120112354	+	908.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080446, intron 1 of 12)	B2_Mm2|SINE|B2	1111.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41847445-6	chr19	41846906	41847906	+	908.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177603, exon 1 of 1)	exon (NM_177603, exon 1 of 1)	726.0	NM_177603	212398.0	Mm.222723	NM_177603	ENSMUSG00000047604	Frat2	-	frequently rearranged in advanced T cell lymphomas 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94370244-2	chr11	94369744	94370744	+	908.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 8 of 30)	intron (NM_029600, intron 8 of 30)	22732.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	7.5	5.0	6.0	8.5	10.5	6.5
Merged-chr8-46742066-2	chr8	46741566	46742566	+	908.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	2321.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30827219-2	chr2	30826719	30827719	+	908.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133346, intron 1 of 5)	intron (NM_133346, intron 1 of 5)	1081.0	NM_133346	72323.0	Mm.27656	NM_133346	ENSMUSG00000039483	Asb6	2510004M11Rik|AA409356	ankyrin repeat and SOCS box-containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-30982796-2	chr6	30982296	30983296	+	908.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23806.0	NM_001135093	619665.0	Mm.204671	NM_001135093	ENSMUSG00000073209	Klf14	5330411L03Rik|AL022736|BTEB5	Kruppel-like factor 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118686092-2	chr9	118685592	118686592	+	908.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 13 of 27)	intron (NM_133721, intron 13 of 27)	-25600.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.5	0.0	1.0	2.5	6.5	1.5
Merged-chr1-86503575-4	chr1	86503037	86504037	+	908.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23020.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7820378-4	chr10	7819884	7820884	+	908.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026141, intron 12 of 12)	intron (NM_026141, intron 12 of 12)	-12086.0	NM_172785	237256.0	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	7.5	16.0	13.5	5.5	20.0	19.5
Merged-chr5-38310177-2	chr5	38309677	38310677	+	908.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9332.0	NM_013503	13492.0	Mm.167154	NM_013503	ENSMUSG00000039358	Drd5	D5R|Drd-5|Drd1b|Gpcr1	dopamine receptor D5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127498945-2	chr2	127498445	127499445	+	908.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019789, intron 2 of 8)	intron (NM_019789, intron 2 of 8)	-16446.0	NM_001111331	56461.0	Mm.315292	NM_019789	ENSMUSG00000079056	Kcnip3	4933407H12Rik|AI413860|Csen|DREAM|KChIP3|R74849	Kv channel interacting protein 3, calsenilin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102450153-2	chr15	102449653	102450653	+	908.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356575, intron 7 of 11)	B1_Mm|SINE|Alu	4786.0	NM_144547	110542.0	Mm.60331	NM_144547	ENSMUSG00000023047	Amhr2	Misiir|Misrii|Mrii	anti-Mullerian hormone type 2 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29572476-4	chr19	29571963	29572963	+	908.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081319, intron 8 of 25)	Tigger7|DNA|TcMar-Tigger	50181.0	NM_001081319	226089.0	Mm.353838	NM_177641	ENSMUSG00000038658	Ric1	C030046E11Rik|C130057E09Rik|Kiaa1432	RAB6A GEF complex partner 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71701122-2	chr8	71700623	71701623	+	908.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028189, intron 1 of 2)	intron (NM_028189, intron 1 of 2)	677.0	NM_028189	72297.0	Mm.290837	NM_028189	ENSMUSG00000031803	B3gnt3	2210008L19Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding	7.5	25.0	12.0	16.5	20.5	10.0
Merged-chr7-141010657-3	chr7	141010158	141011158	+	908.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025378)	promoter-TSS (NM_025378)	86.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20114160-2	chr11	20113656	20114656	+	908.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1205.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	126.0	197.5	198.5	31.5	147.5	104.0
Merged-chr16-84585110-3	chr16	84584501	84585501	+	908.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94788.0	NR_040537	78023.0	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	1.0	13.5	1.5	1.0	3.0	4.5
Merged-chr2-25197691-2	chr2	25197191	25198191	+	908.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146115)	promoter-TSS (NM_146115)	-878.0	NM_146115	227612.0	Mm.119747	NM_146115	ENSMUSG00000059555	Tor4a	A830007P12Rik	torsin family 4, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61273593-2	chr10	61273093	61274093	+	908.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081127)	promoter-TSS (NM_001081127)	-155.0	NM_001081127	237360.0	Mm.333252	NM_001081127	ENSMUSG00000059901	Adamts14	Adamts-14|TS14	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117599294-2	chr11	117598794	117599794	+	908.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11953.0	NR_015489	78403.0	Mm.212543	NR_015489		2900041M22Rik	-	RIKEN cDNA 2900041M22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6488420-2	chr19	6487920	6488920	+	908.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 11 of 22)	intron (NM_001205234, intron 11 of 22)	54650.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95665147-13	chr3	95664715	95665715	+	908.487183	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6494.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-60481916-4	chr3	60481431	60482431	+	908.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253713, intron 2 of 9)	intron (NM_001253713, intron 2 of 9)	9101.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-166160843-4	chr1	166160360	166161360	+	908.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021610, intron 4 of 6)	intron (NM_021610, intron 4 of 6)	30639.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44373159-4	chr19	44372654	44373654	+	908.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34555.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	4.5	3.0	3.0	4.5	3.0	0.0
Merged-chr7-88430329-4	chr7	88429846	88430846	+	908.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028238)	promoter-TSS (NM_028238)	73.0	NM_028238	72433.0	Mm.276669	NM_028238	ENSMUSG00000030559	Rab38	2310011F14Rik|AU043391|cht	RAB38, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92992446-4	chr1	92991938	92992938	+	908.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	13535.0	NM_022320	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-83767103-4	chr2	83766570	83767570	+	908.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008402, intron 8 of 29)	intron (NM_008402, intron 8 of 29)	42673.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40805467-4	chr9	40804974	40805974	+	908.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_031165)	TTS (NM_031165)	4201.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	6.5	102.0	16.5	8.0	42.0	34.5
Merged-chr14-14606208-4	chr14	14605700	14606700	+	908.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96825.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	0.0	4.0	2.5	0.5	2.0	0.0
Merged-chr3-69679461-4	chr3	69679010	69680010	+	908.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-42545.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	43.0	52.5	55.0	30.5	90.5	88.0
Merged-chr7-31168584-3	chr7	31168080	31169080	+	908.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046062, intron 3 of 3)	intron (NR_046062, intron 3 of 3)	6222.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-12305418-3	chr4	12304918	12305918	+	908.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-133403.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64861504-4	chr5	64861000	64862000	+	908.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57977.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-9897141-4	chr10	9896578	9897578	+	908.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081344, intron 2 of 25)	intron (NM_001081344, intron 2 of 25)	3962.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	7.0	31.5	18.0	6.0	19.5	23.5
Merged-chr4-126553266-4	chr4	126552760	126553760	+	908.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3720.0	NM_175554	269582.0	Mm.243962	NM_175554	ENSMUSG00000042489	Clspn	B130025E01|C85083|E130314M08Rik	claspin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88436803-4	chr4	88436255	88437255	+	908.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025760, intron 2 of 6)	intron (NM_025760, intron 2 of 6)	2171.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	12.0	25.5	31.5	3.5	17.0	28.5
Merged-chr9-16307552-3	chr9	16307038	16308038	+	908.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 1 of 24)	intron (NM_001080814, intron 1 of 24)	70693.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-47702516-4	chr8	47702023	47703023	+	908.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11408.0	NM_001359133	70925.0	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81421724-4	chr15	81421191	81422191	+	908.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177310, intron 2 of 8)	intron (NM_177310, intron 2 of 8)	-13418.0	NM_021317	57755.0	Mm.440590	NM_021317	ENSMUSG00000047108	Dnajb7	4933424H20Rik|Dj5|mDj5	DnaJ heat shock protein family (Hsp40) member B7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-3004660-3	chr18	3004167	3005167	+	908.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	118745.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6430785-2	chr17	6430285	6431285	+	908.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009342, intron 1 of 4)	intron (NM_009342, intron 1 of 4)	673.0	NM_009342	21648.0	Mm.1948	NM_009342	ENSMUSG00000096255	Dynlt1b	AGS2|Dynlt1|Tctex-1|Tctex1	dynein light chain Tctex-type 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37735031-4	chr1	37734539	37735539	+	908.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15228.0	NM_028096	72097.0	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-51597206-4	chr1	51596703	51597703	+	908.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151621)	promoter-TSS (NR_151621)	-485.0	NR_151621	100045066.0	Mm.404734	NR_151621		Gm17767	-	predicted gene, 17767	ncRNA	2.0	2.0	0.0	2.5	1.5	3.0
Merged-chr3-31087954-5	chr3	31087558	31088558	+	908.400024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7000.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97617340-4	chr3	97616844	97617844	+	908.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-7154.0	NM_026539	68058.0	Mm.31761	NM_026539	ENSMUSG00000028089	Chd1l	4432404A22Rik|Alc1|Snf2p	chromodomain helicase DNA binding protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133650188-4	chr4	133649683	133650683	+	908.3916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR50|LTR|ERVL	-16754.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	22.0	58.0	21.0	14.0	19.5	28.0
Merged-chr7-118535636-4	chr7	118535116	118536116	+	908.3916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172476)	TTS (NM_172476)	-2260.0	NM_009940	12850.0	Mm.20634	NM_009940	ENSMUSG00000030652	Coq7	clk-1	demethyl-Q 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86232417-3	chr17	86231919	86232919	+	908.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 1 of 14)	MIR|SINE|MIR	54759.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	0.0	3.0	0.0	1.5	0.0	0.0
Merged-chr10-88727355-4	chr10	88726858	88727858	+	908.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3743.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91899693-4	chr16	91899110	91900110	+	908.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010587, exon 33 of 39)	exon (NM_010587, exon 33 of 39)	32020.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	6.5	5.0	4.0	0.5	1.0	5.5
Merged-chr4-40772994-4	chr4	40772494	40773494	+	908.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15109.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126474572-2	chr7	126474072	126475072	+	908.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289540, intron 1 of 10)	intron (NM_001289540, intron 1 of 10)	558.0	NM_001289538	20399.0	Mm.8538	NM_011363	ENSMUSG00000030733	Sh2b1	AI425885|C530001K22Rik|Irip|Psm|SH2-B|SH2-Bb|Sh2bpsm1|mKIAA1299	SH2B adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-157013195-4	chr1	157012727	157013727	+	908.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73601.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	44.5	73.0	81.0	83.5	226.5	161.5
Merged-chr9-21361297-2	chr9	21360797	21361797	+	908.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6574.0	NM_001042708	16201.0	Mm.440026	NM_010561	ENSMUSG00000032178	Ilf3	MBII-26|MPHOSPH4|NF90|NFAR	interleukin enhancer binding factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102022656-2	chr7	102022026	102023026	+	908.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 8 of 8)	intron (NM_029211, intron 8 of 8)	-4371.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	3.0	10.0	20.0	3.0	10.0	7.5
Merged-chr14-20105629-4	chr14	20105133	20106133	+	908.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22461.0	NM_026209	67509.0	Mm.292423	NM_026209	ENSMUSG00000045107	Saysd1	1810063B07Rik|4930488P03Rik	SAYSVFN motif domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-43462987-3	chr6	43462512	43463512	+	908.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045988, intron 1 of 2)	intron (NR_045988, intron 1 of 2)	20583.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37692601-3	chr19	37692073	37693073	+	908.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001105201, intron 5 of 5)	intron (NM_001105201, intron 5 of 5)	-5235.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	16.5	0.0	0.5	1.5	13.5	3.0
Merged-chr2-166708794-3	chr2	166708316	166709316	+	908.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	RMER15|LTR|ERVL	5016.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102283093-3	chr15	102282607	102283607	+	908.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3651.0	NM_134100	106073.0	Mm.287740	NM_134100	ENSMUSG00000045665	Mfsd5	AA409375|AW556797|D15Mgi27	major facilitator superfamily domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44068786-3	chr10	44068303	44069303	+	908.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63957.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-24698644-3	chr1	24698164	24699164	+	908.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026719, intron 3 of 15)	intron (NM_026719, intron 3 of 15)	19746.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	18.0	23.5	18.5	34.0	53.5	36.0
Merged-chr15-67785853-3	chr15	67785326	67786326	+	908.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	473030.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	6.0	8.0	9.0	7.0	0.0	6.5
Merged-chr8-66861912-3	chr8	66861406	66862406	+	908.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163564, intron 1 of 7)	intron (NM_001163564, intron 1 of 7)	1689.0	NM_001163564	234344.0	Mm.334561	NM_001163564	ENSMUSG00000014907	Naf1	Gm174	nuclear assembly factor 1 ribonucleoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143532236-3	chr5	143531749	143532749	+	908.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-4218.0	NM_001347530	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-124021887-3	chr9	124021375	124022375	+	908.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009914)	promoter-TSS (NM_009914)	-96.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-119947013-2	chr6	119946513	119947513	+	908.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_198703, intron 19 of 27)	B2_Mm2|SINE|B2	44315.0	NM_001166383	19365.0	Mm.149	NM_011236	ENSMUSG00000030166	Rad52	Rad52yh	RAD52 homolog, DNA repair protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67145597-3	chr15	67145102	67146102	+	908.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 2 of 8)	(TG)n|Simple_repeat|Simple_repeat	31280.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11516287-7	chr2	11515799	11516799	+	908.301575	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	(CAGA)n|Simple_repeat|Simple_repeat	-14209.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-66816679-4	chr4	66816117	66817117	+	908.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-10934.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	15.0	23.0	13.0	21.5	4.5	17.5
Merged-chr2-102988039-4	chr2	102987540	102988540	+	908.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85473.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93305906-4	chr1	93305404	93306404	+	908.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178051)	promoter-TSS (NM_178051)	-25.0	NM_178051	69821.0	Mm.52809	NM_178051	ENSMUSG00000026273	Mterf4	1810059A23Rik|4933412H03Rik|Mterfd2	mitochondrial transcription termination factor 4	protein-coding	3.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143488187-4	chr5	143487673	143488673	+	908.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 8 of 14)	intron (NM_144915, intron 8 of 14)	23680.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45513564-3	chr4	45513068	45514068	+	908.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	17260.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	17.0	14.0	10.0	12.5	15.0	13.0
Merged-chr10-12929911-3	chr10	12929395	12930395	+	908.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6768.0	NR_038028	320273.0	Mm.417706	NR_038027	ENSMUSG00000097378	B230208H11Rik	-	RIKEN cDNA B230208H11 gene	ncRNA	3.0	6.5	8.5	24.5	9.5	11.5
Merged-chr16-78541095-4	chr16	78540598	78541598	+	908.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001252440, exon 5 of 5)	3' UTR (NM_001252440, exon 5 of 5)	-19218.0	NR_040569	75818.0	Mm.410817	NR_040569		4930478L05Rik	-	RIKEN cDNA 4930478L05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7345763-2	chr19	7345263	7346263	+	908.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3903.0	NM_001080388	13728.0	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88335197-3	chr3	88334707	88335707	+	908.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024246)	promoter-TSS (NM_024246)	-774.0	NM_024246	71913.0	Mm.34256	NM_024246	ENSMUSG00000001420	Tmem79	2310042N02Rik|2310074C17Rik|Matt|ma	transmembrane protein 79	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100510838-2	chr7	100510338	100511338	+	908.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_153527, exon 3 of 8)	exon (NM_153527, exon 3 of 8)	3977.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	1.5	1.0	10.0	1.5	1.0	10.0
Merged-chr18-56470979-4	chr18	56470455	56471455	+	908.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360917, intron 2 of 13)	intron (NM_001360917, intron 2 of 13)	38823.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	1.5	0.0	0.0	0.0	3.0	1.5
Merged-chr11-11557861-4	chr11	11557355	11558355	+	908.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68589.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58559782-3	chr9	58559268	58560268	+	908.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18828.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18629908-6	chr16	18629356	18630356	+	908.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_213614)	promoter-TSS (NM_213614)	82.0	NM_213614	18951.0	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163919114-4	chr2	163918663	163919663	+	908.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183023)	promoter-TSS (NM_183023)	-480.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	0.0	2.0	0.0	0.0	0.0	0.5
Merged-chr19-53128671-4	chr19	53128156	53129156	+	908.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11787.0	NM_001164099	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29718704-4	chr11	29718175	29719175	+	908.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_024226, exon 1 of 7)	5' UTR (NM_024226, exon 1 of 7)	112.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	126.0	297.5	193.5	53.0	105.5	85.5
Merged-chr9-37236095-4	chr9	37235616	37236616	+	908.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145960, intron 10 of 18)	intron (NM_001145960, intron 10 of 18)	19622.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0.0	0.0	1.5	6.5	3.0	0.0
Merged-chr11-70499843-5	chr11	70499371	70500371	+	908.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5403.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95852410-5	chr11	95851888	95852888	+	908.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6429.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	11.5	17.5	30.0	21.0	18.5	26.5
Merged-chr6-109940560-3	chr6	109940064	109941064	+	908.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-704948.0	NM_001346640	108073.0	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99491248-3	chr9	99490758	99491758	+	908.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028768, intron 18 of 21)	intron (NM_028768, intron 18 of 21)	20837.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143041290-3	chr7	143040801	143041801	+	908.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110355, intron 2 of 4)	intron (NR_110355, intron 2 of 4)	-11449.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	18.0	22.0	32.5	29.0	30.0	6.5
Merged-chr7-65704980-4	chr7	65704452	65705452	+	908.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11535.0	NM_026795	68634.0	Mm.476828	NM_026795	ENSMUSG00000078681	Tm2d3	1110025I09Rik|5930422O05Rik|Blp2	TM2 domain containing 3	protein-coding	10.0	13.0	25.0	4.5	16.0	18.5
Merged-chr12-80213467-4	chr12	80212973	80213973	+	908.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 1 of 20)	MIR3|SINE|MIR	46898.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76392968-5	chr12	76392481	76393481	+	908.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11195.0	NM_001002012	15512.0	Mm.296181	NM_008301	ENSMUSG00000059970	Hspa2	70kDa|HSP70.2|HSP70A2|Hsp70-2	heat shock protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-54358573-4	chr3	54358060	54359060	+	908.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2547.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-40392743-3	chr1	40392244	40393244	+	908.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36826.0	NM_001294171	17082.0	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48097155-4	chr17	48096664	48097664	+	908.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6786.0	NR_110485	320638.0	Mm.404482	NR_110485		A730006G06Rik	-	RIKEN cDNA A730006G06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119090234-2	chr11	119089734	119090734	+	908.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3997.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22706123-4	chr8	22705621	22706621	+	908.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010546, exon 2 of 21)	exon (NM_010546, exon 2 of 21)	462.0	NM_010546	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35947133-4	chr16	35946626	35947626	+	908.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030253, intron 3 of 10)	intron (NM_030253, intron 3 of 10)	-8099.0	NM_001013371	209200.0	Mm.390852	NM_001013371	ENSMUSG00000049502	Dtx3l	AU042200|BC023741	deltex 3-like, E3 ubiquitin ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106796852-4	chr11	106796356	106797356	+	908.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166685, intron 4 of 18)	ID_B1|SINE|B4	7604.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134642041-4	chr6	134641516	134642516	+	908.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026371, intron 1 of 3)	intron (NM_026371, intron 1 of 3)	1076.0	NM_026371	67774.0	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	14.0	44.5	32.5	48.0	73.0	63.5
Merged-chr3-137948317-4	chr3	137947781	137948781	+	908.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 4 of 8)	B4A|SINE|B4	29726.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	3.5	5.5	9.5	4.0	24.5	13.0
Merged-chr13-112413775-3	chr13	112413269	112414269	+	908.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50301.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127479928-3	chr7	127479379	127480379	+	908.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5342.0	NM_010183	14123.0	Mm.323505	NM_010183	ENSMUSG00000042423	Fbrs	Fbs|Fbs1	fibrosin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133598893-4	chr4	133598383	133599383	+	908.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3285.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	24.0	23.0	12.5	20.0	30.5	15.0
Merged-chr16-75593936-4	chr16	75593392	75594392	+	908.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198302, intron 1 of 4)	intron (NM_198302, intron 1 of 4)	1001.0	NM_198302	224344.0	Mm.273214	NM_198302	ENSMUSG00000032940	Rbm11	A330018F01	RNA binding motif protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37230072-4	chr9	37229542	37230542	+	908.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_020258, exon 18 of 18)	3' UTR (NM_020258, exon 18 of 18)	21726.0	NM_001310096	66279.0	Mm.41451	NM_025464	ENSMUSG00000032121	Tmem218	1810021J13Rik|AV004931	transmembrane protein 218	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-76068116-3	chr3	76067617	76068617	+	908.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6444.0	NM_178673	213262.0	Mm.379337	NM_178673	ENSMUSG00000034098	Fstl5	9130207J01Rik	follistatin-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102986574-4	chr2	102986079	102987079	+	908.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84914.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173089643-4	chr2	173089146	173090146	+	908.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29879.0	NM_001081387	664799.0	Mm.389396	NM_001081387	ENSMUSG00000070495	Ctcfl	Boris	CCCTC-binding factor (zinc finger protein)-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164803607-4	chr2	164803123	164804123	+	908.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133240, intron 1 of 5)	intron (NM_133240, intron 1 of 5)	1258.0	NM_133240	170789.0	Mm.277878	NM_133240	ENSMUSG00000017307	Acot8	PTE-2|Pte1	acyl-CoA thioesterase 8	protein-coding	0.0	1.5	0.0	9.5	3.5	4.5
Merged-chr14-46993395-3	chr14	46992894	46993894	+	908.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	-7946.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	27.5	41.5	44.5	20.5	31.5	37.0
Merged-chr10-127538481-3	chr10	127537980	127538980	+	908.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008512, exon 89 of 89)	3' UTR (NM_008512, exon 89 of 89)	-3921.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-83790016-6	chr3	83789519	83790519	+	908.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	23698.0	NM_009144	20319.0	Mm.19155	NM_009144	ENSMUSG00000027996	Sfrp2	AI851596|Sdf5	secreted frizzled-related protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34244236-3	chr19	34243767	34244767	+	908.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007392, intron 7 of 8)	intron (NM_007392, intron 7 of 8)	11106.0	NM_007392	11475.0	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMAalpha|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	21.5	74.5	49.0	19.5	18.5	11.0
Merged-chr15-76294807-4	chr15	76294287	76295287	+	908.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001195537, exon 1 of 7)	exon (NM_001195537, exon 1 of 7)	353.0	NM_001195537	100503915.0	Mm.393455	NM_001195537	ENSMUSG00000071724	Smpd5	Gm10345|MA-nSMase	sphingomyelin phosphodiesterase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24364992-4	chr7	24364493	24365493	+	908.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5270.0	NM_001163510	16534.0	Mm.9911	NM_008433	ENSMUSG00000054342	Kcnn4	IK1|IKCA1|KCA4|KCa3.1|SK4|SKCas|mIKCa1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32077597-4	chr19	32077096	32078096	+	908.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018830, intron 2 of 23)	L1_Mur3|LINE|L1	25544.0	NM_018830	54447.0	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	43.5	39.0	32.0	27.0	28.0	33.0
Merged-chr2-91950926-4	chr2	91950534	91951534	+	908.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166597)	promoter-TSS (NM_001166597)	-686.0	NM_001166597	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	5.0	11.5	4.5	5.0	19.5	18.0
Merged-chr3-65658159-4	chr3	65657640	65658640	+	908.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1148.0	NR_106200	102465905.0		NR_106200	ENSMUSG00000098944	Mir8120	Gm27637|mmu-mir-8120	microRNA 8120	ncRNA	0.0	1.0	2.5	5.0	4.5	3.0
Merged-chr5-124599975-2	chr5	124599490	124600490	+	908.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026486, intron 3 of 18)	MTC|LTR|ERVL-MaLR	1241.0	NM_026486	67978.0	Mm.1158	NM_026486		Tctn2	4432405B04Rik|Tect2	tectonic family member 2	protein-coding	10.0	5.0	0.5	8.0	23.0	1.5
Merged-chr19-47374609-3	chr19	47374129	47375129	+	908.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 3 of 14)	MLT1K|LTR|ERVL-MaLR	89782.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0.0	3.0	1.0	1.0	0.0	4.5
Merged-chr11-75515407-2	chr11	75514907	75515907	+	908.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001004157, exon 4 of 11)	exon (NM_001004157, exon 4 of 11)	1866.0	NM_001004157	380713.0	Mm.10486	NM_001004157	ENSMUSG00000038188	Scarf1	AA986099|SREC|SREC-I|mKIAA0149	scavenger receptor class F, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-149015561-1	chr5	149015061	149016061	+	908.0	f1_balb.idr	Intergenic	CpG	8599.0	NR_040429	100503307.0	Mm.188008	NR_040429	ENSMUSG00000086610	Gm15408	-	predicted gene 15408	ncRNA	0.0	0.0	2.5	2.5	0.0	0.0
Merged-chr19-45085257-2	chr19	45084757	45085757	+	908.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9170.0	NM_001362397	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80806067-3	chr10	80805573	80806573	+	908.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007445, exon 2 of 5)	exon (NM_007445, exon 2 of 5)	825.0	NM_007445	11705.0	Mm.376094	NM_007445	ENSMUSG00000035262	Amh	MIS	anti-Mullerian hormone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98895923-2	chr15	98895423	98896423	+	908.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007857, intron 1 of 2)	intron (NM_007857, intron 1 of 2)	2617.0	NM_007857	13363.0	Mm.324688	NM_007857	ENSMUSG00000023000	Dhh	C78960	desert hedgehog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-193875039-2	chr1	193874539	193875539	+	908.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	347720.0	NR_040477	74942.0	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142443567-2	chr7	142443067	142444067	+	908.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009405, intron 3 of 5)	intron (NM_009405, intron 3 of 5)	1099.0	NM_009405	21953.0	Mm.39469	NM_009405	ENSMUSG00000031097	Tnni2	-	troponin I, skeletal, fast 2	protein-coding	0.0	0.0	6.0	0.0	0.0	0.5
Merged-chr15-81417144-4	chr15	81416632	81417632	+	908.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177310, intron 2 of 8)	ERVB7_2B-LTR_MM|LTR|ERVK	-8859.0	NM_021317	57755.0	Mm.440590	NM_021317	ENSMUSG00000047108	Dnajb7	4933424H20Rik|Dj5|mDj5	DnaJ heat shock protein family (Hsp40) member B7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155560879-2	chr4	155560379	155561379	+	908.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1502.0	NM_138671	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	21.0	33.5	28.5	6.0	39.0	28.5
Merged-chr11-35842147-4	chr11	35841579	35842579	+	908.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170779, intron 20 of 22)	intron (NM_170779, intron 20 of 22)	-7551.0	NM_025936	104458.0	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21619394-1	chr9	21618894	21619894	+	908.0	f1_balb.idr	intron (NM_001357764, intron 1 of 34)	RSINE1|SINE|B4	3225.0	NM_001174078	20586.0	Mm.286593	NM_011417	ENSMUSG00000032187	Smarca4	BAF190A|Brg1|HP1-BP72|SNF2beta|SW1/SNF|b2b508.1Clo|b2b692Clo	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31408332-4	chr3	31407826	31408826	+	908.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-98007.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91816229-3	chr12	91815715	91816715	+	908.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039089, intron 15 of 20)	intron (NM_001039089, intron 15 of 20)	-29779.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91257434-2	chr2	91256934	91257934	+	908.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028733, exon 1 of 11)	5' UTR (NM_028733, exon 1 of 11)	105.0	NM_028733	80708.0	Mm.236650	NM_028733	ENSMUSG00000027257	Pacsin3	4921507A02Rik|6330413E15Rik|AW413130	protein kinase C and casein kinase substrate in neurons 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40997783-4	chr4	40997286	40998286	+	908.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290448, intron 10 of 15)	intron (NM_001290448, intron 10 of 15)	4091.0	NR_037277	100526501.0		NR_037277	ENSMUSG00000092862	Mir3094	mir-3094|mmu-mir-3094	microRNA 3094	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-96629406-3	chr7	96628901	96629901	+	908.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 5 of 32)	intron (NM_011858, intron 5 of 32)	172148.0	NR_045874	791381.0	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	-	predicted gene 15413	ncRNA	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34217880-1	chr19	34217380	34218380	+	908.0	f1_balb.idr	intron (NM_001360719, intron 1 of 10)	ID_B1|SINE|B4	372.0	NM_001360719	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	6.0	0.0	0.0	6.5	2.0	7.5
Merged-chr6-34879111-2	chr6	34878611	34879611	+	908.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1046.0	NM_001135611	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9937554-2	chr19	9937054	9938054	+	908.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12|LTR|ERVK	-38021.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.0	0.0	0.0	0.0	2.0	2.0
Merged-chr2-24344807-2	chr2	24344307	24345307	+	908.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159562)	promoter-TSS (NM_001159562)	-484.0	NM_001159562	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113421698-2	chr6	113421198	113422198	+	908.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2350.0	NM_001346511	101122.0	Mm.31204	NM_001033204	ENSMUSG00000051169	Rpusd3	AI527266	RNA pseudouridylate synthase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-150243172-2	chr5	150242672	150243672	+	908.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16758.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	0.0	3.0	8.5	0.0	0.0	2.0
Merged-chr9-5296275-2	chr9	5295775	5296775	+	908.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-2242.0	NM_009807	12362.0	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128924373-4	chr4	128923888	128924888	+	908.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38067.0	NM_172875	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-109823876-1	chr13	109823376	109824376	+	908.0	f0_balb.idr	intron (NM_011056, intron 7 of 16)	intron (NM_011056, intron 7 of 16)	-79933.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150132851-3	chr4	150132350	150133350	+	908.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019741, intron 6 of 13)	intron (NM_019741, intron 6 of 13)	13506.0	NM_019741	56485.0	Mm.260220	NM_019741	ENSMUSG00000028976	Slc2a5	AI526984|Glut5|Slc5a	solute carrier family 2 (facilitated glucose transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118822166-2	chr9	118821666	118822666	+	908.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 4 of 13)	intron (NM_001113514, intron 4 of 13)	-104370.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	12.5	17.5	11.0	0.0	4.0	1.5
Merged-chr11-98889372-3	chr11	98888862	98889862	+	908.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197940, intron 2 of 7)	MTB_Mm|LTR|ERVL-MaLR	-18527.0	NM_001025779	23834.0	Mm.20912	NM_011799	ENSMUSG00000017499	Cdc6	CDC18L	cell division cycle 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-150588314-2	chr5	150587814	150588814	+	908.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133898, intron 1 of 4)	intron (NM_133898, intron 1 of 4)	6211.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-67581392-1	chr11	67580892	67581892	+	908.0	f1_balb.idr	intron (NM_008088, intron 1 of 13)	intron (NM_008088, intron 1 of 13)	-5108.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.0	0.0	0.0	2.5	4.5	0.0
Merged-chr3-88746986-2	chr3	88746496	88747496	+	908.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018804, exon 4 of 4)	3' UTR (NM_018804, exon 4 of 4)	25603.0	NM_018804	229521.0	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	9.5	8.5	17.0	4.5	14.5	10.0
Merged-chr4-141767830-2	chr4	141767257	141768257	+	908.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172338, exon 11 of 15)	exon (NM_172338, exon 11 of 15)	21082.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	40.5	52.0	82.0	38.0	90.5	52.0
Merged-chr17-56215398-2	chr17	56214898	56215898	+	908.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360284, intron 2 of 20)	intron (NM_001360284, intron 2 of 20)	3087.0	NM_001360284	224897.0	Mm.205535	NM_172624	ENSMUSG00000001229	Dpp9	6430584G11Rik|A330078I11|DPP IX|DPRP2	dipeptidylpeptidase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76228442-2	chr16	76227942	76228942	+	908.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105829.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24501663-5	chr13	24501176	24502176	+	907.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80513.0	NM_001286100	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126210131-4	chr4	126209643	126210643	+	907.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-7433.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28568428-4	chr7	28567921	28568921	+	907.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027470, intron 2 of 9)	intron (NM_027470, intron 2 of 9)	-7437.0	NR_106016	102466795.0		NR_106016	ENSMUSG00000098558	Mir7049	Gm27277|mmu-mir-7049	microRNA 7049	ncRNA	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr19-5414969-4	chr19	5414470	5415470	+	907.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027938, intron 1 of 3)	AT_rich|Low_complexity|Low_complexity	8155.0	NR_027938	74931.0	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	7.5	0.0	2.5	0.0	1.0	1.5
Merged-chr7-100932884-4	chr7	100932359	100933359	+	907.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081116)	promoter-TSS (NM_001081116)	-698.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-57297706-4	chr2	57297194	57298194	+	907.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010274, intron 3 of 16)	intron (NM_010274, intron 3 of 16)	59312.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-18810198-4	chr13	18809700	18810700	+	907.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 7 of 28)	intron (NM_172120, intron 7 of 28)	92908.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	1.0	0.0	0.0	1.5	3.0	1.0
Merged-chr9-78526317-3	chr9	78525833	78526833	+	907.955566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44609.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37246631-7	chr9	37246287	37247287	+	907.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145960, intron 1 of 18)	intron (NM_001145960, intron 1 of 18)	8951.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26616935-3	chr17	26616417	26617417	+	907.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 3 of 9)	intron (NM_026170, intron 3 of 9)	55405.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41515918-4	chr13	41515444	41516444	+	907.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28584.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-42194081-3	chr8	42193607	42194607	+	907.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	366840.0	NR_045497	69966.0	Mm.416903	NR_045497	ENSMUSG00000102046	2810404M03Rik	-	RIKEN cDNA 2810404M03 gene	ncRNA	4.0	1.5	0.0	2.5	6.0	0.0
Merged-chr10-81290663-2	chr10	81290163	81291163	+	907.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282095, intron 1 of 20)	intron (NM_001282095, intron 1 of 20)	604.0	NM_013769	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64633268-3	chr1	64632804	64633804	+	907.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16136.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96503263-3	chr3	96502769	96503769	+	907.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21916.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	0.0	4.0	9.5	2.0	2.0	4.0
Merged-chr15-67092484-3	chr15	67091972	67092972	+	907.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84410.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	2.0	0.0	1.0	0.0	0.5	4.0
Merged-chr2-163756002-3	chr2	163755501	163756501	+	907.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5762.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	10.0	1.5	3.0	7.0	19.5	23.0
Merged-chr8-95420693-3	chr8	95420235	95421235	+	907.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008187, intron 5 of 5)	intron (NM_008187, intron 5 of 5)	14134.0	NM_008187	14894.0	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-104132553-6	chr13	104131916	104132916	+	907.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144838, intron 8 of 10)	AT_rich|Low_complexity|Low_complexity	22675.0	NM_144838	218544.0	Mm.44416	NM_144838	ENSMUSG00000042743	Sgtb	C630001O05Rik	small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta	protein-coding	26.0	30.5	16.0	17.0	9.0	19.5
Merged-chr4-135241873-4	chr4	135241374	135242374	+	907.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	30886.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-57355637-4	chr19	57355158	57356158	+	907.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040316, intron 1 of 2)	intron (NR_040316, intron 1 of 2)	5241.0	NR_040316	320879.0	Mm.375089	NR_040316	ENSMUSG00000097785	B230217O12Rik	-	RIKEN cDNA B230217O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-46442169-4	chr2	46441690	46442690	+	907.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	745585.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92098491-4	chr5	92097946	92098946	+	907.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-14702.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-12419441-4	chr4	12418943	12419943	+	907.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-247428.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25858263-4	chr15	25857780	25858780	+	907.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 1 of 8)	intron (NM_001034851, intron 1 of 8)	14982.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-93650243-4	chr14	93649762	93650762	+	907.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081377, intron 2 of 4)	intron (NM_001081377, intron 2 of 4)	240407.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.0	3.5	8.0	1.5	8.0	1.0
Merged-chr10-82623062-8	chr10	82622508	82623508	+	907.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001135567, exon 1 of 3)	5' UTR (NM_001135567, exon 1 of 3)	220.0	NM_001135569	544717.0	Mm.334867	NM_001135567	ENSMUSG00000063320	1190007I07Rik	-	RIKEN cDNA 1190007I07 gene	protein-coding	37.0	92.0	77.5	58.0	65.5	52.5
Merged-chr6-8686861-4	chr6	8686315	8687315	+	907.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252266, intron 5 of 11)	intron (NM_001252266, intron 5 of 11)	71643.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71288691-4	chr8	71288131	71289131	+	907.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 1 of 39)	B3|SINE|B2	15917.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	80.0	157.5	120.5	83.0	153.5	143.0
Merged-chr7-75118266-4	chr7	75117772	75118772	+	907.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360573, intron 13 of 13)	intron (NM_001360573, intron 13 of 13)	88061.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	2.5	2.0	1.5	0.0	1.0	1.0
Merged-chr5-122536181-3	chr5	122535744	122536744	+	907.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34019.0	NR_027838	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0.0	0.0	3.0	0.0	0.0	1.0
Merged-chr3-27289029-4	chr3	27288568	27289568	+	907.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28009.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24360937-3	chr5	24360437	24361437	+	907.8444210000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3882.0	NM_008713	18127.0	Mm.258415	NM_008713	ENSMUSG00000028978	Nos3	2310065A03Rik|Nos-3|eNOS|ecNOS	nitric oxide synthase 3, endothelial cell	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116666892-4	chr4	116666368	116667368	+	907.841675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-15194.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64574577-2	chr1	64574077	64575077	+	907.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037726, intron 5 of 6)	intron (NM_001037726, intron 5 of 6)	41773.0	NM_001037726	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47909415-4	chr17	47908920	47909920	+	907.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028767, intron 1 of 16)	intron (NM_028767, intron 1 of 16)	15212.0	NM_028767	74123.0	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	5.0	0.0	0.0	2.5	4.0	2.0
Merged-chr9-120034526-4	chr9	120034013	120035013	+	907.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10915.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	58.5	31.0	48.0	31.0	74.0	56.0
Merged-chr12-80071043-4	chr12	80070544	80071544	+	907.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41969.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73593574-4	chr12	73593072	73594072	+	907.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 1 of 13)	intron (NM_008856, intron 1 of 13)	8776.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	4.5	4.0	4.0	4.5	4.0	4.0
Merged-chr15-64181436-4	chr15	64180932	64181932	+	907.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	-120984.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	3.5	2.0	0.5	0.0	4.0	1.5
Merged-chr15-76350174-3	chr15	76349663	76350663	+	907.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025340, exon 2 of 9)	exon (NM_025340, exon 2 of 9)	947.0	NM_025340	106025.0	Mm.41463	NM_025340	ENSMUSG00000022552	Sharpin	0610041B22Rik|AW121341|RBCKL1|SIPL1|cpdm	SHANK-associated RH domain interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149001693-3	chr4	149001188	149002188	+	907.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019781, intron 3 of 8)	intron (NM_019781, intron 3 of 8)	-49366.0	NR_154553	108168987.0	Mm.393596	NR_154553		Gm13205	AA408865	predicted gene 13205	ncRNA	2.0	0.0	5.0	1.5	0.0	5.0
Merged-chr11-3913362-3	chr11	3912838	3913838	+	907.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_153142, exon 1 of 2)	5' UTR (NM_153142, exon 1 of 2)	1326.0	NM_153142	103710.0	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28756596-4	chr17	28756098	28757098	+	907.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12719.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25435683-3	chr7	25435131	25436131	+	907.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015569, intron 4 of 6)	intron (NR_015569, intron 4 of 6)	-22745.0	NM_153576	232983.0	Mm.10545	NM_153576	ENSMUSG00000060188	Cxcl17	VCC-1|Vcc1	chemokine (C-X-C motif) ligand 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47738922-4	chr9	47738411	47739411	+	907.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	79297.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	22.0	50.5	48.5	16.5	68.0	44.0
Merged-chr9-37530225-4	chr9	37529721	37530721	+	907.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136939, intron 1 of 6)	intron (NR_136939, intron 1 of 6)	2132.0	NM_027102	69524.0	Mm.41751	NM_027102	ENSMUSG00000001946	Esam	2310008D05Rik|Esam1|W117m	endothelial cell-specific adhesion molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64744057-4	chr9	64743548	64744548	+	907.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-6292.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16456338-4	chr19	16455839	16456839	+	907.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008137, intron 1 of 6)	intron (NM_008137, intron 1 of 6)	20672.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-57621470-4	chr18	57620985	57621985	+	907.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311063, intron 5 of 5)	intron (NM_001311063, intron 5 of 5)	17100.0	NR_045360	70157.0	Mm.490532	NR_045360		2210409D07Rik	-	RIKEN cDNA 2210409D07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-133758667-4	chr3	133758160	133759160	+	907.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-214270.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118671892-2	chr9	118671429	118672429	+	907.7999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 10 of 27)	intron (NM_133721, intron 10 of 27)	-39763.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	12.0	45.0	24.0	21.5	44.0	10.0
Merged-chr8-120111241-2	chr8	120110741	120111741	+	907.7999880000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-2911.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-58042099-4	chr2	58041564	58042564	+	907.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10688.0	NM_029972	77767.0	Mm.91712	NM_029972	ENSMUSG00000026830	Ermn	A330104H05Rik|AI854460|ermin|mKIAA1189	ermin, ERM-like protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-14507822-4	chr19	14507303	14508303	+	907.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302951, intron 8 of 19)	intron (NM_001302951, intron 8 of 19)	-69297.0	NR_003027	19862.0		NR_003027	ENSMUSG00000095132	Rnu6	-	U6 small nuclear RNA	snRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-35694897-4	chr11	35694395	35695395	+	907.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011412, intron 32 of 35)	ORR1G|LTR|ERVL-MaLR	-74600.0	NM_145962	211347.0	Mm.255044	NM_145962	ENSMUSG00000018846	Pank3	-	pantothenate kinase 3	protein-coding	22.0	27.5	22.0	5.5	6.0	17.5
Merged-chr13-60605462-4	chr13	60604972	60605972	+	907.785706	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	3261.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	3.0	11.0	20.5	8.5	25.5	9.5
Merged-chr15-10583548-3	chr15	10583033	10584033	+	907.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356534, intron 12 of 16)	intron (NM_001356534, intron 12 of 16)	-16760.0	NR_033541	100038608.0	Mm.450744	NR_033541	ENSMUSG00000115667	Gm10389	-	predicted gene 10389	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157204527-10	chr2	157203949	157204949	+	907.7700199999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001139516)	promoter-TSS (NM_001139516)	85.0	NM_011249	19650.0	Mm.244671	NM_011249	ENSMUSG00000027641	Rbl1	AW547426|PRB1|p107	RB transcriptional corepressor like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-14843244-4	chr14	14842747	14843747	+	907.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195229, intron 7 of 34)	intron (NM_001195229, intron 7 of 34)	22432.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	4.5	1.5	4.5	8.5	5.0	5.5
Merged-chr4-136124748-4	chr4	136124269	136125269	+	907.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20A4|LTR|ERVK	-19053.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	20.5	68.5	30.5	14.5	67.5	19.0
Merged-chr4-129121187-3	chr4	129120712	129121712	+	907.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010471)	promoter-TSS (NM_010471)	91.0	NM_010471	15444.0	Mm.384452	NM_010471	ENSMUSG00000028785	Hpca	-	hippocalcin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-41525153-4	chr5	41524652	41525652	+	907.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR16B_MM|LTR|ERVK	182539.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	4.5	4.0	5.0	0.0	0.0	3.0
Merged-chr5-129874126-4	chr5	129873614	129874614	+	907.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_145487, intron 2 of 8)	intron (NR_145487, intron 2 of 8)	4974.0	NR_145486	18682.0	Mm.3159	NM_011079	ENSMUSG00000025537	Phkg1	Phkg	phosphorylase kinase gamma 1	protein-coding	0.0	3.0	2.0	0.0	7.0	3.5
Merged-chr12-85704783-4	chr12	85704307	85705307	+	907.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016767, intron 2 of 2)	intron (NM_016767, intron 2 of 2)	18087.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3646053-5	chr7	3645517	3646517	+	907.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146176, intron 1 of 17)	intron (NM_146176, intron 1 of 17)	748.0	NM_146176	232791.0	Mm.358731	NM_146176	ENSMUSG00000035632	Cnot3	A930039N10Rik	CCR4-NOT transcription complex, subunit 3	protein-coding	11.0	17.0	7.0	3.5	10.5	4.0
Merged-chr8-36816246-4	chr8	36815729	36816729	+	907.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 4 of 17)	intron (NM_001194940, intron 4 of 17)	-83175.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	6.5	23.5	31.5	11.5	17.5	14.0
Merged-chr5-105648932-3	chr5	105648415	105649415	+	907.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51054.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	33.5	36.5	43.0	37.5	23.0	31.5
Merged-chr1-181861072-7	chr1	181860576	181861576	+	907.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18675.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23538420-4	chr13	23537909	23538909	+	907.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2991.0	NM_145073	97908.0	Mm.261657	NM_145073	ENSMUSG00000099517	Hist1h3g	H3.1-221|M32460	histone cluster 1, H3g	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-69215897-4	chr17	69215423	69216423	+	907.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	56567.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81498112-4	chr10	81497564	81498564	+	907.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010102, exon 1 of 1)	3' UTR (NM_010102, exon 1 of 1)	-1701.0	NM_134009	103425.0	Mm.302791	NM_134009	ENSMUSG00000020238	Ncln	3100002P13Rik|AW120537	nicalin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17467007-3	chr12	17466516	17467516	+	907.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77857.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	0.0	10.0	7.5	21.0	15.0	14.5
Merged-chr7-141436717-3	chr7	141436208	141437208	+	907.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360724, intron 1 of 9)	intron (NM_001360724, intron 1 of 9)	1166.0	NM_026646	68267.0	Mm.33729	NM_026646	ENSMUSG00000019082	Slc25a22	1300006L01Rik|AI060884|Gc1	solute carrier family 25 (mitochondrial carrier, glutamate), member 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-45345204-4	chr8	45344705	45345705	+	907.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153535, intron 8 of 13)	intron (NM_153535, intron 8 of 13)	-12009.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14893555-3	chr8	14893064	14894064	+	907.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012000, intron 1 of 2)	intron (NM_012000, intron 1 of 2)	5028.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137609443-3	chr4	137608948	137609948	+	907.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355588, intron 6 of 26)	intron (NM_001355588, intron 6 of 26)	15276.0	NM_130879	170707.0	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	48.0	54.0	62.0	31.5	61.0	53.0
Merged-chr11-60333338-3	chr11	60332855	60333855	+	907.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359810, intron 1 of 12)	intron (NM_001359810, intron 1 of 12)	19550.0	NM_153080	216810.0	Mm.218875	NM_153080	ENSMUSG00000000538	Tom1l2	2900016I08Rik|A730055F12Rik|AU042072|Srebf1	target of myb1-like 2 (chicken)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44836103-4	chr7	44835579	44836579	+	907.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010215)	promoter-TSS (NM_010215)	-209.0	NM_010215	14204.0	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114933753-4	chr11	114933215	114934215	+	907.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199221, intron 1 of 3)	intron (NM_199221, intron 1 of 3)	671.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100750789-4	chr5	100750289	100751289	+	907.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31073.0	NM_152803	15442.0	Mm.265786	NM_152803	ENSMUSG00000035273	Hpse	HSE1|Hpa|Hpr1	heparanase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30945425-3	chr5	30944924	30945924	+	907.6666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160149)	promoter-TSS (NM_001160149)	3.0	NM_001160149	68567.0	Mm.45127	NM_026770	ENSMUSG00000029161	Cgref1	1110004G24Rik|AW045201|Cgr11	cell growth regulator with EF hand domain 1	protein-coding	0.0	0.0	1.5	0.0	4.0	0.5
Merged-chr3-30599772-3	chr3	30599260	30600260	+	907.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029690, exon 1 of 2)	exon (NM_029690, exon 1 of 2)	110.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64242148-3	chr15	64241645	64242645	+	907.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	70528.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118095197-4	chr11	118094706	118095706	+	907.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167746, intron 27 of 80)	ORR1E|LTR|ERVL-MaLR	34013.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16115404-2	chr1	16114904	16115904	+	907.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133832, intron 2 of 5)	intron (NM_133832, intron 2 of 5)	9522.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0.0	0.0	7.5	0.0	0.0	3.5
Merged-chr13-104108701-4	chr13	104108156	104109156	+	907.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029447, intron 1 of 12)	intron (NM_029447, intron 1 of 12)	958.0	NM_029447	75805.0	Mm.127692	NM_029447	ENSMUSG00000021710	Nln	4930472G13Rik|C79345	neurolysin (metallopeptidase M3 family)	protein-coding	7.0	10.0	11.0	9.0	13.5	28.5
Merged-chr9-99143109-4	chr9	99142586	99143586	+	907.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-2875.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60391241-4	chr10	60390825	60391825	+	907.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 30 of 68)	intron (NM_001252635, intron 30 of 68)	-8401.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38475693-7	chr16	38475176	38476176	+	907.642883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359898, intron 2 of 5)	intron (NM_001359898, intron 2 of 5)	16743.0	NM_009855	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-41081089-4	chr9	41080566	41081566	+	907.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	-1560.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	17.5	13.5	12.5	15.5	16.5	17.0
Merged-chr1-151661772-4	chr1	151661269	151662269	+	907.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 5 of 13)	intron (NM_022018, intron 5 of 13)	90396.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95637392-4	chr3	95636953	95637953	+	907.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	12473.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	33.5	46.0	31.5	24.0	42.5	35.0
Merged-chr13-51099553-4	chr13	51099045	51100045	+	907.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_029463, exon 1 of 1)	non-coding (NR_029463, exon 1 of 1)	1182.0	NR_029463	77428.0	Mm.405630	NR_029463		9430083A17Rik	-	RIKEN cDNA 9430083A17 gene	ncRNA	1.0	5.5	5.0	1.0	5.5	5.0
Merged-chr18-46465480-4	chr18	46464981	46465981	+	907.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045438, exon 1 of 1)	non-coding (NR_045438, exon 1 of 1)	335.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64810692-4	chr5	64810211	64811211	+	907.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	7188.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	27.5	89.0	64.5	46.5	80.0	49.5
Merged-chr13-52505873-4	chr13	52505385	52506385	+	907.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001024474, exon 2 of 2)	3' UTR (NM_001024474, exon 2 of 2)	24951.0	NM_001024474	68203.0	Mm.29362	NM_001024474	ENSMUSG00000047842	Diras2	2900052J15Rik|AI414999	DIRAS family, GTP-binding RAS-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5793248-5	chr19	5792773	5793773	+	907.580933	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2708.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-22744388-4	chr2	22743900	22744900	+	907.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-29927.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108417703-3	chr6	108417201	108418201	+	907.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 38 of 61)	intron (NM_010585, intron 38 of 61)	-72042.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105016408-3	chr3	105015908	105016908	+	907.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 3 of 5)	L1ME2|LINE|L1	36545.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-36159168-6	chr8	36158695	36159695	+	907.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151736, intron 2 of 3)	intron (NR_151736, intron 2 of 3)	3185.0	NR_151736	330738.0	Mm.128075	NR_151736	ENSMUSG00000109704	Gm38414	A230084N10|Gm45568	predicted gene, 38414	ncRNA	2.0	1.0	1.5	1.5	5.5	7.0
Merged-chr5-134507525-4	chr5	134507010	134508010	+	907.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009990, intron 8 of 16)	B3A|SINE|B2	44924.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118390240-4	chr2	118389762	118390762	+	907.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177806, intron 1 of 37)	MER46C|DNA|TcMar-Tigger	1150.0	NM_001177806	27103.0	Mm.217616	NM_013719	ENSMUSG00000005102	Eif2ak4	2610011M03|GCN2|MGCN2	eukaryotic translation initiation factor 2 alpha kinase 4	protein-coding	33.5	150.0	114.5	39.0	125.0	76.5
Merged-chr3-152149508-4	chr3	152149026	152150026	+	907.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016867, intron 1 of 5)	intron (NM_016867, intron 1 of 5)	16374.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119609759-2	chr13	119609259	119610259	+	907.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001039244, exon 3 of 3)	3' UTR (NM_001039244, exon 3 of 3)	-14060.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-100421379-2	chr3	100420879	100421879	+	907.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5026.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80693018-4	chr17	80692517	80693517	+	907.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360278, intron 1 of 33)	intron (NM_001360278, intron 1 of 33)	35008.0	NM_001360278	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29754848-2	chr11	29754348	29755348	+	907.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_146016, exon 33 of 42)	exon (NM_146016, exon 33 of 42)	36285.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122160870-4	chr2	122160375	122161375	+	907.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_080510, exon 1 of 7)	5' UTR (NM_080510, exon 1 of 7)	175.0	NM_080510	70928.0	Mm.379188	NM_080510	ENSMUSG00000033368	Trim69	4921519C19Rik|Rnf36|Trif|Trimless	tripartite motif-containing 69	protein-coding	0.5	10.5	9.0	14.0	2.5	1.0
Merged-chr3-152209034-2	chr3	152208534	152209534	+	907.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356363, intron 1 of 3)	intron (NM_001356363, intron 1 of 3)	1049.0	NM_001356363	67035.0	Mm.46746	NM_025926	ENSMUSG00000028035	Dnajb4	1700029A20Rik|2010306G19Rik|5730460G06Rik	DnaJ heat shock protein family (Hsp40) member B4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86228399-4	chr15	86227912	86228912	+	907.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 1 of 12)	Tigger5b|DNA|TcMar-Tigger	13953.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79995177-2	chr10	79994677	79995677	+	907.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007725, exon 7 of 7)	3' UTR (NM_007725, exon 7 of 7)	-2431.0	NM_001347081	27403.0	Mm.103351	NM_013850	ENSMUSG00000035722	Abca7	ABCX|Abc51	ATP-binding cassette, sub-family A (ABC1), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91724098-2	chr2	91723552	91724552	+	907.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-6086.0	NM_172669	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	2.5	8.0	10.0	11.5	28.0	25.5
Merged-chr6-146662862-4	chr6	146662358	146663358	+	907.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046277, intron 1 of 2)	B3A|SINE|B2	5640.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	5.5	3.5	2.0	0.0	2.0	0.0
Merged-chr11-82175000-4	chr11	82174504	82175504	+	907.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4808.0	NM_011329	20290.0	Mm.1283	NM_011329	ENSMUSG00000020702	Ccl1	BF534335|I-309|P500|Scya1|Tca-3|Tca3	chemokine (C-C motif) ligand 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-56714314-2	chr6	56713814	56714814	+	907.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030235)	promoter-TSS (NM_030235)	-591.0	NM_030235	78937.0	Mm.105343	NM_030235	ENSMUSG00000029787	Avl9	5830411G16Rik|D730049P16Rik|mKIAA0241	AVL9 cell migration associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-84797073-2	chr11	84796573	84797573	+	907.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22442.0	NM_145433	217038.0	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik	mitochondrial rRNA methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61090727-2	chr10	61090227	61091227	+	907.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025273, intron 1 of 3)	intron (NM_025273, intron 1 of 3)	1396.0	NM_025273	13180.0	Mm.39473	NM_025273	ENSMUSG00000020098	Pcbd1	Dcoh|Pcbd|Pcd|Phs	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3807615-5	chr12	3807067	3808067	+	907.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	407.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60749638-2	chr10	60749138	60750138	+	907.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 2 of 5)	intron (NM_023596, intron 2 of 5)	3144.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94496748-4	chr11	94496265	94497265	+	907.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361558, intron 1 of 8)	intron (NM_001361558, intron 1 of 8)	3209.0	NM_001361558	71889.0	Mm.248620	NM_027984	ENSMUSG00000010080	Epn3	2310022G12Rik	epsin 3	protein-coding	1.0	0.0	0.0	6.5	0.0	0.5
Merged-chr11-5802671-2	chr11	5802124	5803124	+	907.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018870, intron 2 of 2)	intron (NM_018870, intron 2 of 2)	1172.0	NM_018870	56012.0	Mm.219627	NM_018870	ENSMUSG00000020475	Pgam2	-	phosphoglycerate mutase 2	protein-coding	1.5	7.5	4.0	3.0	4.5	8.5
Merged-chr2-165285340-2	chr2	165284840	165285840	+	907.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252575, intron 1 of 9)	intron (NM_001252575, intron 1 of 9)	2447.0	NM_001252574	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72723894-3	chr8	72723400	72724400	+	907.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113248, intron 1 of 6)	CpG	630.0	NM_009188	20467.0	Mm.2137	NM_009188	ENSMUSG00000031622	Sin3b	2810430C10Rik	transcriptional regulator, SIN3B (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16192550-4	chr7	16192025	16193025	+	907.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17130.0	NR_102730	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	3.5	2.5	1.0	0.0	2.5	0.5
Merged-chr14-44102041-2	chr14	44101541	44102541	+	907.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001012766)	promoter-TSS (NM_001012766)	-613.0	NM_007895	13587.0	Mm.327386	NM_007895	ENSMUSG00000072596	Ear2	EAR-13|EAR-2|ECP|ECP 2|Raf3|Rnase2	eosinophil-associated, ribonuclease A family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76536924-4	chr12	76536388	76537388	+	907.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	3328.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35788230-2	chr17	35787730	35788730	+	907.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15780.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	0.0	1.0	0.0	5.0	0.0	5.0
Merged-chr2-164947696-4	chr2	164947182	164948182	+	907.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013599)	promoter-TSS (NM_013599)	-537.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	0.5	0.0	5.5	6.5	7.0	2.0
Merged-chr17-87143326-3	chr17	87142824	87143824	+	907.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35645.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	0.0	5.0	5.0	4.0	0.5	5.5
Merged-chr11-20202915-4	chr11	20202420	20203420	+	907.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 1 of 5)	intron (NM_008996, intron 1 of 5)	1508.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	24.5	70.5	50.5	15.0	75.0	55.5
Merged-chr3-21807761-2	chr3	21807261	21808261	+	907.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G|LTR|ERVL-MaLR	-268891.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87008201-2	chr3	87007701	87008701	+	907.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-8861.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	1.0	9.0	5.0	3.0	7.5	6.5
Merged-chr5-102067706-2	chr5	102067206	102068206	+	907.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	2215.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	14.0	7.0	12.0	19.5	34.0	8.0
Merged-chr2-4570536-4	chr2	4570030	4571030	+	907.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 2 of 11)	intron (NM_001177844, intron 2 of 11)	10776.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152189469-2	chr3	152188969	152189969	+	907.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356364, intron 1 of 2)	intron (NM_001356364, intron 1 of 2)	4376.0	NM_025926	67035.0	Mm.46746	NM_025926	ENSMUSG00000028035	Dnajb4	1700029A20Rik|2010306G19Rik|5730460G06Rik	DnaJ heat shock protein family (Hsp40) member B4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184841445-2	chr1	184840945	184841945	+	907.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133684, intron 1 of 7)	intron (NM_133684, intron 1 of 7)	4402.0	NM_133684	67247.0	Mm.177724	NM_133684	ENSMUSG00000073481	Marc2	2810484M10Rik|Mosc2|mARC1	mitochondrial amidoxime reducing component 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49308476-4	chr13	49307942	49308942	+	907.4874880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 1 of 17)	intron (NM_015759, intron 1 of 17)	766.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-131281667-3	chr6	131281151	131282151	+	907.466675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	11593.0	NM_001327860	66441.0	Mm.46623	NM_025564	ENSMUSG00000030188	Magohb	2010012C16Rik|Mago|Magoh|Magoh-rs1	mago homolog B, exon junction complex core component	protein-coding	19.5	17.0	18.5	13.5	28.0	19.0
Merged-chr2-92485846-4	chr2	92485357	92486357	+	907.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25339.0	NM_145832	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146642125-3	chr3	146641602	146642602	+	907.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045949, exon 1 of 4)	non-coding (NR_045949, exon 1 of 4)	170.0	NR_045949	100286843.0	Mm.475299	NR_045949	ENSMUSG00000085810	Gm16325	-	predicted gene 16325	ncRNA	2.0	0.5	5.5	6.5	7.5	3.0
Merged-chr10-43910812-3	chr10	43910342	43911342	+	907.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_130892, exon 4 of 9)	exon (NM_130892, exon 4 of 9)	9035.0	NM_130892	170728.0	Mm.390253	NM_130892	ENSMUSG00000019864	Rtn4ip1	D10Ertd690e|NIMP	reticulon 4 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-72104710-3	chr12	72104216	72105216	+	907.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028687, intron 19 of 20)	intron (NM_028687, intron 19 of 20)	18877.0	NM_024205	104771.0	Mm.258935	NM_024205	ENSMUSG00000005078	Jkamp	1200003C05Rik|2310047L11Rik|Jamp	JNK1/MAPK8-associated membrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-33539735-3	chr6	33539221	33540221	+	907.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 9 of 17)	intron (NM_009148, intron 9 of 17)	290593.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21914706-4	chr13	21914213	21915213	+	907.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17664.0	NR_035500	100316716.0		NR_035500	ENSMUSG00000088148	Mir1983	mmu-mir-1983	microRNA 1983	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-3026935-8	chr9	3026400	3027400	+	907.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	11843.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128412500-4	chr2	128412011	128413011	+	907.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	16840.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	1.5	6.5	3.0	9.0	15.0	3.0
Merged-chr5-75157132-6	chr5	75156594	75157594	+	907.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083316, intron 1 of 22)	intron (NM_001083316, intron 1 of 22)	928.0	NM_001083316	18595.0	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr7-63908863-4	chr7	63908350	63909350	+	907.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-8007.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	1.0	9.0	2.0	0.0	4.0	6.5
Merged-chr3-103913484-4	chr3	103912981	103913981	+	907.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356556)	promoter-TSS (NM_001356556)	-639.0	NM_001356557	229675.0	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|KDM9|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	17.0	20.5	20.5	9.5	13.0	7.0
Merged-chr1-166631938-4	chr1	166631455	166632455	+	907.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164312, intron 8 of 8)	intron (NM_001164312, intron 8 of 8)	15738.0	NM_001164312	226604.0	Mm.330032	NM_001164312	ENSMUSG00000051081	Gm4847	EG226604|Fmo12	predicted gene 4847	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25867916-4	chr17	25867413	25868413	+	907.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026633, intron 2 of 4)	intron (NM_026633, intron 2 of 4)	825.0	NM_026633	68241.0	Mm.328870	NM_026633	ENSMUSG00000025732	Mcrip2	9530058B02Rik|Fam195a	MAPK regulated corepressor interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-117832361-4	chr12	117831863	117832863	+	907.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-11498.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	0.0	13.0	4.0	1.5	5.5	3.5
Merged-chr10-94919521-5	chr10	94919079	94920079	+	907.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 2 of 30)	intron (NM_018797, intron 2 of 30)	24999.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-110747625-3	chr13	110747129	110748129	+	907.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-155870.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	0.0	4.0	0.5	4.5	2.0	0.5
Merged-chr17-29434799-4	chr17	29434294	29435294	+	907.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56251.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	10.0	21.0	11.0	2.5	50.0	7.5
Merged-chr2-168010102-4	chr2	168009598	168010598	+	907.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080708, intron 1 of 21)	intron (NM_001080708, intron 1 of 21)	495.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102940381-4	chr2	102939894	102940894	+	907.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-38729.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-73085926-4	chr9	73085389	73086389	+	907.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301230, intron 5 of 6)	intron (NM_001301230, intron 5 of 6)	-16509.0	NM_025890	66991.0	Mm.471745	NM_025890	ENSMUSG00000092622	Khdc3	2410004A20Rik|AI467128|FILIA|OEEP48	KH domain containing 3, subcortical maternal complex member	protein-coding	4.5	3.5	7.0	8.0	8.5	9.5
Merged-chr2-59055910-4	chr2	59055411	59056411	+	907.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 1 of 13)	L1MA9|LINE|L1	104772.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45954488-5	chr9	45953968	45954968	+	907.3666380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152206, exon 1 of 1)	non-coding (NR_152206, exon 1 of 1)	482.0	NR_152206	100101457.0	Mm.397964	NR_152206	ENSMUSG00000111329	A830035O19Rik	-	RIKEN cDNA A830035O19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96568689-3	chr3	96568156	96569156	+	907.3666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B2|LTR|ERVK	-1855.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111889415-4	chr12	111888917	111889917	+	907.354126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011625, intron 1 of 16)	MIRb|SINE|MIR	18638.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-28593035-4	chr2	28592544	28593544	+	907.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9765.0	NM_001290484	70239.0	Mm.274120	NM_148928	ENSMUSG00000026816	Gtf3c5	2700084A09Rik|TFIIIC63|TFiiiC2-63	general transcription factor IIIC, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99221045-4	chr5	99220516	99221516	+	907.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 13 of 13)	RMER19C|LTR|ERVK	31911.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81041829-4	chr13	81041338	81042338	+	907.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015587, intron 1 of 1)	ORR1E|LTR|ERVL-MaLR	77764.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-94670489-4	chr9	94670025	94671025	+	907.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 1 of 15)	intron (NM_177909, intron 1 of 15)	633.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-136324858-2	chr3	136324358	136325358	+	907.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 1 of 16)	L1_Mus1|LINE|L1	1208.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	2.5	10.0	4.0	2.5	1.5	5.0
Merged-chr1-176074791-3	chr1	176074265	176075265	+	907.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357846, intron 2 of 8)	intron (NM_001357846, intron 2 of 8)	139177.0	NM_001357845	319455.0	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding	2.0	4.5	8.5	8.5	1.0	6.0
Merged-chr6-146209192-4	chr6	146208680	146209680	+	907.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 45 of 56)	intron (NM_019923, intron 45 of 56)	275058.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31424127-2	chr14	31423627	31424627	+	907.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	MTD|LTR|ERVL-MaLR	-6450.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133160430-3	chr4	133159923	133160923	+	907.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	RSINE1|SINE|B4	29790.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	49.5	208.0	90.0	64.5	161.0	121.0
Merged-chr7-74555628-3	chr7	74555153	74556153	+	907.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023908)	promoter-TSS (NM_023908)	-873.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45575111-2	chr19	45574611	45575611	+	907.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_172639, intron 4 of 5)	intron (NM_172639, intron 4 of 5)	14526.0	NM_172639	226162.0	Mm.21978	NM_172639	ENSMUSG00000041035	Dpcd	Ndac	deleted in primary ciliary dyskinesia	protein-coding	0.0	0.0	1.5	0.0	0.0	1.0
Merged-chr16-77014911-3	chr16	77014422	77015422	+	907.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 1 of 23)	intron (NM_013918, intron 1 of 23)	853.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-192101540-3	chr1	192101042	192102042	+	907.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001290279, exon 10 of 10)	3' UTR (NM_001290279, exon 10 of 10)	-8943.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-31126381-3	chr7	31125862	31126862	+	907.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011322, intron 1 of 5)	intron (NM_011322, intron 1 of 5)	661.0	NM_011322	20266.0	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	6.0	20.0	25.0	25.0	37.0	32.0
Merged-chr8-68206913-4	chr8	68206406	68207406	+	907.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69622.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	53.5	130.5	104.5	24.5	167.0	88.5
Merged-chr3-22008652-4	chr3	22008169	22009169	+	907.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67983.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26203543-4	chr17	26203038	26204038	+	907.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081069, intron 3 of 16)	CpG-6118	597.0	NM_001081069	50782.0	Mm.109840	NM_001081069	ENSMUSG00000024186	Rgs11	C78048	regulator of G-protein signaling 11	protein-coding	1.0	0.0	0.0	0.0	0.0	0.5
Merged-chr18-62178748-9	chr18	62178299	62179299	+	907.3110960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007420, exon 1 of 1)	exon (NM_007420, exon 1 of 1)	1182.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	40.0	62.0	36.5	71.0	86.0	55.0
Merged-chr5-123471029-4	chr5	123470532	123471532	+	907.30835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16B2|LTR|ERVL	11069.0	NM_029594	76399.0	Mm.75049	NM_029594	ENSMUSG00000029437	Il31	1700013B14Rik	interleukin 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88623711-3	chr10	88623209	88624209	+	907.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18557.0	NM_175418	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	0.0	13.0	14.0	14.5	11.5	11.5
Merged-chr14-70914538-3	chr14	70914068	70915068	+	907.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302094, intron 2 of 7)	intron (NM_001302094, intron 2 of 7)	24461.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	7.5	1.0	1.5	1.0	8.5	1.5
Merged-chr2-6580320-4	chr2	6579866	6580866	+	907.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 11 of 15)	intron (NM_001110232, intron 11 of 15)	141296.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155095476-4	chr4	155094978	155095978	+	907.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356327, intron 6 of 12)	intron (NM_001356327, intron 6 of 12)	8874.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-142698524-8	chr2	142698018	142699018	+	907.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 23 of 26)	intron (NM_001355123, intron 23 of 26)	202946.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171183685-3	chr1	171183209	171184209	+	907.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025557, intron 1 of 2)	intron (NM_025557, intron 1 of 2)	12559.0	NM_025557	66425.0	Mm.482117	NM_025557	ENSMUSG00000038370	Pcp4l1	1500036F01Rik	Purkinje cell protein 4-like 1	protein-coding	5.0	25.5	22.0	3.0	24.5	25.0
Merged-chr12-111843060-6	chr12	111842526	111843526	+	907.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011625, intron 7 of 16)	intron (NM_011625, intron 7 of 16)	28856.0	NM_026752	68520.0	Mm.390497	NM_026752	ENSMUSG00000021286	Zfyve21	1110013H04Rik|AW558780|C85416	zinc finger, FYVE domain containing 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-37248768-3	chr12	37248252	37249252	+	907.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178767, intron 2 of 12)	intron (NM_178767, intron 2 of 12)	7113.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	12.5	18.0	6.5	9.5	32.5	9.5
Merged-chr16-11012085-4	chr16	11011515	11012515	+	907.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040518, intron 2 of 2)	intron (NR_040518, intron 2 of 2)	3117.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115005296-4	chr11	115004790	115005790	+	907.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3410.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37178029-4	chr19	37177494	37178494	+	907.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045329, intron 2 of 2)	intron (NR_045329, intron 2 of 2)	-1931.0	NM_001290826	208922.0	Mm.391176	NM_198300	ENSMUSG00000039652	Cpeb3	4831444O18Rik|CPE-BP3|mKIAA0940	cytoplasmic polyadenylation element binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148819163-2	chr4	148818717	148819717	+	907.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_027195, intron 1 of 15)	intron (NM_027195, intron 1 of 15)	14825.0	NM_027195	69743.0	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	4.5	0.0	2.0	0.0	1.5	1.0
Merged-chr10-80738417-2	chr10	80737917	80738917	+	907.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007460, intron 1 of 30)	intron (NM_007460, intron 1 of 30)	3858.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113419916-2	chr13	113419416	113420416	+	907.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	82928.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-70408042-4	chr16	70407561	70408561	+	907.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 3 of 15)	intron (NM_028803, intron 3 of 15)	94112.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	32.5	24.0	17.5	15.0	47.0	27.5
Merged-chr8-109607828-4	chr8	109607327	109608327	+	907.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020046, intron 1 of 8)	B3A|SINE|B2	846.0	NM_020046	56749.0	Mm.23894	NM_020046	ENSMUSG00000031730	Dhodh	2810417D19Rik|AI834883	dihydroorotate dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-34121010-4	chr16	34120530	34121530	+	907.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 33 of 59)	intron (NM_177357, intron 33 of 59)	-153992.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-60559980-3	chr3	60559502	60560502	+	907.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	58823.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	3.0	14.5	6.5	19.0	13.5	6.5
Merged-chr2-72298758-2	chr2	72298258	72299258	+	907.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 2 of 19)	intron (NM_023057, intron 2 of 19)	13057.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106510310-4	chr11	106509818	106510818	+	907.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198292, intron 10 of 11)	B1_Mur4|SINE|Alu	9327.0	NR_030703	100216537.0		NR_030703	ENSMUSG00000065126	Snord104	-	small nucleolar RNA, C/D box 104	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-38011859-4	chr1	38011377	38012377	+	907.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198303, intron 1 of 23)	intron (NM_198303, intron 1 of 23)	13867.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60953955-4	chr11	60953452	60954452	+	907.2374880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21895.0	NM_008928	26397.0	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-41657171-3	chr15	41656648	41657648	+	907.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 3 of 17)	intron (NR_152565, intron 3 of 17)	-131847.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-91185152-3	chr10	91184644	91185644	+	907.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-13525.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61917686-3	chr8	61917198	61918198	+	907.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-10389.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	6.0	14.5	8.0	6.0	14.5	7.5
Merged-chr11-45734981-3	chr11	45734487	45735487	+	907.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73096.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19583222-4	chr10	19582716	19583716	+	907.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8733.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	57.0	31.0	26.0	24.0	44.5	42.0
Merged-chr1-165617903-2	chr1	165617403	165618403	+	907.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	16638.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95830543-4	chr4	95830025	95831025	+	907.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113412, intron 11 of 15)	intron (NM_001113412, intron 11 of 15)	136510.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	5.5	12.0	8.0	7.0	7.5	9.0
Merged-chr4-144995985-3	chr4	144995485	144996485	+	907.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 67 of 69)	intron (NM_001276465, intron 67 of 69)	102848.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54648768-4	chr11	54648272	54649272	+	907.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 16 of 28)	intron (NM_001252494, intron 16 of 28)	52626.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27275399-4	chr3	27274888	27275888	+	907.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-41689.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30265861-3	chr2	30265364	30266364	+	907.138855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252568)	promoter-TSS (NM_001252568)	-339.0	NM_001252568	227696.0	Mm.297949	NM_172267	ENSMUSG00000079484	Phyhd1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-47312911-3	chr4	47312414	47313414	+	907.138855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009928, exon 40 of 40)	3' UTR (NM_009928, exon 40 of 40)	-40308.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100277758-4	chr12	100277266	100278266	+	907.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045741, intron 1 of 3)	intron (NR_045741, intron 1 of 3)	1157.0	NR_045741	100038713.0	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29810541-4	chr11	29810036	29811036	+	907.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 16 of 41)	intron (NM_146016, intron 16 of 41)	15132.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	2.0	2.5	5.5	8.5	2.0	8.0
Merged-chr13-3743259-4	chr13	3742732	3743732	+	907.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61086.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr9-44316651-4	chr9	44316168	44317168	+	907.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359259, intron 4 of 13)	intron (NM_001359259, intron 4 of 13)	3614.0	NM_001359259	71764.0	Mm.491174	NM_027909	ENSMUSG00000032120	C2cd2l	1300006O23Rik|Tmem24	C2 calcium-dependent domain containing 2-like	protein-coding	0.5	35.0	12.0	15.5	45.0	16.0
Merged-chr9-114770430-4	chr9	114769921	114770921	+	907.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252479, intron 1 of 3)	intron (NM_001252479, intron 1 of 3)	11572.0	NM_133978	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72656674-3	chr5	72656113	72657113	+	907.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081205, intron 1 of 5)	intron (NM_001081205, intron 1 of 5)	8817.0	NM_001081205	70701.0	Mm.38884	NM_001081205	ENSMUSG00000067219	Nipal1	3830408G10Rik|Npal1	NIPA-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-45922522-3	chr1	45922015	45923015	+	907.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016917, intron 2 of 7)	URR1B|DNA|hAT-Charlie	3079.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-71831734-5	chr12	71831237	71832237	+	907.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026102, intron 1 of 25)	CpG	669.0	NM_172464	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	0.0	5.5	0.0	0.0	0.0	0.0
Merged-chr5-32734144-2	chr5	32733636	32734636	+	907.099976	f0_balb.idr|f1_balb.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	12206.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0.5	0.0	0.0	0.0	1.0	0.0
Merged-chr10-62326230-2	chr10	62325730	62326730	+	907.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_010438, intron 4 of 21)	intron (NM_010438, intron 4 of 21)	14191.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-96435908-4	chr13	96435408	96436408	+	907.087524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001042714, exon 8 of 14)	exon (NM_001042714, exon 8 of 14)	35252.0	NM_001042714	271144.0	Mm.470057	NM_001042714	ENSMUSG00000047117	Ankdd1b	9330128J19Rik	ankyrin repeat and death domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141148559-4	chr4	141148056	141149056	+	907.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172518, intron 1 of 9)	CpG	634.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-101472927-4	chr2	101472410	101473410	+	907.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-151838.0	NM_009020	19374.0	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59536896-2	chr11	59536396	59537396	+	907.0833130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4673.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-167269471-3	chr1	167268954	167269954	+	907.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030724, intron 1 of 6)	intron (NM_030724, intron 1 of 6)	15673.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101759257-3	chr13	101758658	101759658	+	907.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 1 of 15)	intron (NM_001077495, intron 1 of 15)	9059.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127561734-6	chr10	127561659	127562659	+	907.075928	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 42 of 88)	intron (NM_008512, intron 42 of 88)	-27600.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	2.5	1.5	3.5	5.0	2.5	3.0
Merged-chr7-90481036-3	chr7	90480490	90481490	+	907.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-4995.0	NM_026734	68472.0	Mm.289791	NM_026734	ENSMUSG00000030614	Tmem126b	1110001A23Rik	transmembrane protein 126B	protein-coding	4.0	7.5	2.5	0.0	8.5	11.5
Merged-chr15-73034790-4	chr15	73034285	73035285	+	907.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164643, intron 4 of 8)	intron (NM_001164643, intron 4 of 8)	21027.0	NM_029640	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165234764-4	chr2	165234265	165235265	+	907.0458369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174988)	promoter-TSS (NM_174988)	-28.0	NM_174988	104010.0	Mm.151819	NM_174988	ENSMUSG00000053166	Cdh22	-	cadherin 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5780326-8	chr11	5779837	5780837	+	907.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015577, exon 5 of 7)	non-coding (NR_015577, exon 5 of 7)	-8146.0	NM_001146309	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	15.5	27.5	19.0	15.5	27.5	18.5
Merged-chr9-45197245-4	chr9	45196736	45197736	+	907.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 1 of 4)	intron (NM_001198971, intron 1 of 4)	1470.0	NM_001198971	408059.0	Mm.249297	NM_001198971	ENSMUSG00000091996	BC049352	SMIM35	cDNA sequence BC049352	protein-coding	9.0	18.0	21.5	8.5	17.5	14.5
Merged-chr10-67483611-4	chr10	67483118	67484118	+	907.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54251.0	NM_010118	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-144893591-5	chr4	144893153	144894153	+	907.0399779999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001172424, exon 2 of 7)	exon (NM_001172424, exon 2 of 7)	516.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148081122-2	chr4	148080622	148081622	+	907.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009642, intron 4 of 4)	intron (NM_009642, intron 4 of 4)	6942.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59441145-2	chr2	59440645	59441645	+	907.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-43508.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20204380-2	chr13	20203880	20204880	+	907.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 2 of 21)	intron (NM_080288, intron 2 of 21)	113873.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86684200-1	chr4	86683700	86684700	+	907.0	f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-14141.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	0.0	2.5	0.5	0.0	4.5	0.0
Merged-chr4-95191883-1	chr4	95191383	95192383	+	907.0	f0_balb.idr	Intergenic	Intergenic	-139661.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97795951-2	chr15	97795451	97796451	+	907.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204280, intron 19 of 21)	intron (NM_001204280, intron 19 of 21)	11586.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45730719-1	chr17	45730219	45731219	+	907.0	f1_c57bl6.idr	Intergenic	Intergenic	3125.0	NM_028164	72240.0	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding	0.0	0.0	0.0	6.0	0.0	0.0
Merged-chr19-55265455-3	chr19	55264956	55265956	+	907.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027976, intron 1 of 21)	intron (NM_027976, intron 1 of 21)	12087.0	NM_027976	433256.0	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-99666161-4	chr6	99665683	99666683	+	907.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025829, intron 1 of 6)	L2a|LINE|L2	588.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-9592972-2	chr1	9592472	9593472	+	907.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_015470, intron 3 of 4)	intron (NR_015470, intron 3 of 4)	-8295.0	NM_178399	76982.0	Mm.491098	NM_178399	ENSMUSG00000067879	3110035E14Rik	AI415019|AV164974|R75066	RIKEN cDNA 3110035E14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8135398-4	chr10	8134878	8135878	+	907.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-179255.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	30.5	20.5	36.5	0.5	8.5	5.0
Merged-chr18-61174872-1	chr18	61174372	61175372	+	907.0	f1_c57bl6.idr	intron (NM_134134, intron 1 of 20)	intron (NM_134134, intron 1 of 20)	2177.0	NM_178277	106894.0	Mm.22574	NM_134134	ENSMUSG00000024622	Hmgxb3	2510002C16Rik|A630042L21Rik|AI413166|mKIAA0194	HMG box domain containing 3	protein-coding	3.5	2.5	7.0	7.0	0.0	2.5
Merged-chr11-85574674-4	chr11	85574147	85575147	+	907.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 21 of 25)	intron (NM_138681, intron 21 of 25)	145097.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120157607-3	chr14	120157091	120158091	+	907.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115156.0	NM_001001490	239283.0	Mm.138520	NM_001001490	ENSMUSG00000044819	Oxgr1	Cysltr3|Gm299|Gpr80|Gpr99|P2Y15	oxoglutarate (alpha-ketoglutarate) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156473526-1	chr1	156473026	156474026	+	907.0	f1_balb.idr	intron (NM_009230, intron 1 of 15)	intron (NM_009230, intron 1 of 15)	802.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	146.5	311.5	260.5	97.5	297.0	236.5
Merged-chr17-25129209-1	chr17	25128709	25129709	+	907.0	f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-4182.0	NM_011930	26373.0	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	7.0	11.0	0.5	4.0	0.5	4.5
Merged-chr2-11602115-2	chr2	11601615	11602615	+	907.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_152824, intron 1 of 11)	intron (NM_152824, intron 1 of 11)	1084.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17760146-4	chr16	17759665	17760665	+	907.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145479, intron 1 of 6)	CpG	544.0	NM_001359068	224023.0	Mm.282807	NM_145479	ENSMUSG00000022750	Klhl22	2610318I18Rik|Kelchl	kelch-like 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127744742-3	chr10	127744265	127745265	+	907.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_198035, exon 2 of 2)	3' UTR (NM_198035, exon 2 of 2)	5227.0	NM_198035	320080.0	Mm.27258	NM_198035	ENSMUSG00000044617	Zbtb39	7030401O21Rik|mKIAA0352	zinc finger and BTB domain containing 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88740449-2	chr3	88739949	88740949	+	907.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	23595.0	NR_028056	19769.0	Mm.4009	NM_009069	ENSMUSG00000028057	Rit1	RIBB|ROC1|Rit	Ras-like without CAAX 1	protein-coding	0.0	1.5	0.5	2.0	1.0	0.0
Merged-chr17-31073114-2	chr17	31072614	31073614	+	907.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	(CA)n|Simple_repeat|Simple_repeat	15420.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	15.5	29.5	41.0	20.5	54.0	50.5
Merged-chr6-15625798-2	chr6	15625298	15626298	+	907.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94863.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104661628-1	chr9	104661128	104662128	+	907.0	f0_balb.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	92145.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	7.5	3.5	10.5	9.0	19.0	3.5
Merged-chr5-40750555-2	chr5	40750055	40751055	+	907.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	957136.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-31931415-2	chr9	31930915	31931915	+	907.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12B|LTR|ERVK	-18130.0	NM_013800	12023.0	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106298276-1	chr9	106297776	106298776	+	907.0	f1_balb.idr	intron (NM_027354, intron 7 of 10)	intron (NM_027354, intron 7 of 10)	17215.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	28.0	49.0	6.5	0.0	5.0	9.0
Merged-chr12-102068877-2	chr12	102068377	102069377	+	907.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59850.0	NM_001362345	238384.0	Mm.312448	NM_172152	ENSMUSG00000041771	Slc24a4	A930002M03Rik|AW492432|NCKX4	solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90110644-2	chr9	90110144	90111144	+	907.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039147, intron 1 of 12)	(TTTA)n|Simple_repeat|Simple_repeat	4176.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66186400-2	chr5	66185900	66186900	+	907.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040695, intron 1 of 2)	MER2|DNA|TcMar-Tigger	4935.0	NR_040695	73639.0	Mm.48851	NR_040695	ENSMUSG00000107014	1700126H18Rik	-	RIKEN cDNA 1700126H18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70018537-3	chr11	70018047	70019047	+	907.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001109752)	promoter-TSS (NM_001109752)	-58.0	NM_001109752	13385.0	Mm.27256	NM_007864	ENSMUSG00000020886	Dlg4	Dlgh4|PSD-95|PSD95|SAP90|SAP90A	discs large MAGUK scaffold protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-66927528-2	chr10	66927028	66928028	+	907.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-7144.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79544750-4	chr15	79544244	79545244	+	907.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040187, intron 1 of 12)	intron (NM_001040187, intron 1 of 12)	1815.0	NM_199079	67040.0	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31409029-3	chr3	31408529	31409529	+	907.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98710.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101983272-7	chr11	101982748	101983748	+	906.9761960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028207, intron 1 of 2)	intron (NM_028207, intron 1 of 2)	1543.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	32.5	82.0	33.5	24.5	57.5	39.0
Merged-chr11-75566043-4	chr11	75565528	75566528	+	906.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 9 of 13)	intron (NM_001199284, intron 9 of 13)	14599.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	5.5	18.5	15.0	16.0	12.5	10.5
Merged-chr13-36695977-4	chr13	36695471	36696471	+	906.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38506.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99476849-4	chr5	99476327	99477327	+	906.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-223900.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	6.0	29.0	27.0	10.5	13.0	18.0
Merged-chr2-90496497-3	chr2	90495988	90496988	+	906.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-17314.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	1.5	24.0	13.0	6.5	40.0	9.0
Merged-chr10-120702038-4	chr10	120701544	120702544	+	906.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63688.0	NR_038000	70874.0	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	0.0	2.0	0.0	0.0	2.0	0.5
Merged-chr12-80885519-4	chr12	80885003	80886003	+	906.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38944.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-18935247-3	chr8	18934765	18935765	+	906.9365230000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176951, intron 6 of 6)	intron (NM_176951, intron 6 of 6)	15606.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132564992-4	chr7	132564480	132565480	+	906.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016978, intron 4 of 9)	intron (NM_016978, intron 4 of 9)	11418.0	NM_016978	18242.0	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119261951-4	chr9	119261445	119262445	+	906.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359582, intron 9 of 18)	intron (NM_001359582, intron 9 of 18)	-30253.0	NR_033303	109280.0	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	10.0	17.0	8.5	1.5	15.0	26.0
Merged-chr19-45650148-4	chr19	45649603	45650603	+	906.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013907, intron 1 of 8)	B2_Mm2|SINE|B2	10090.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43394650-4	chr4	43394142	43395142	+	906.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037709, intron 1 of 11)	intron (NM_001037709, intron 1 of 11)	-11860.0	NM_199057	100213.0	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	25.5	82.0	91.5	29.5	60.5	48.0
Merged-chr5-130453946-4	chr5	130453368	130454368	+	906.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021371, intron 1 of 5)	ID_B1|SINE|B4	5076.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85372517-4	chr12	85372014	85373014	+	906.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 1 of 4)	intron (NM_026775, intron 1 of 4)	2203.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9062896-2	chr19	9062396	9063396	+	906.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286518, intron 6 of 6)	intron (NM_001286518, intron 6 of 6)	25060.0	NM_011681	22287.0	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96535818-4	chr9	96535268	96536268	+	906.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-57093.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-88765876-3	chr13	88765383	88766383	+	906.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-55589.0	NM_010103	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-82376362-3	chr8	82375874	82376874	+	906.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008357, intron 2 of 7)	MLT2B3|LTR|ERVL	26212.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	23.0	29.0	15.5	16.5	13.0	21.5
Merged-chr5-20816023-3	chr5	20815521	20816521	+	906.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172992, intron 2 of 17)	intron (NM_172992, intron 2 of 17)	66103.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134734634-7	chr4	134734144	134735144	+	906.88092	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30354.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67464916-4	chr18	67464405	67465405	+	906.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144867)	promoter-TSS (NM_144867)	56.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-62784121-4	chr17	62783589	62784589	+	906.837524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010109, intron 1 of 3)	intron (NM_010109, intron 1 of 3)	97228.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36525687-4	chr18	36525190	36526190	+	906.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2462.0	NM_172830	240215.0	Mm.135463	NM_172830	ENSMUSG00000024485	Slc4a9	AE4|D630003B07|D630024F24Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 9	protein-coding	0.0	0.0	0.0	4.0	0.0	0.0
Merged-chr6-124966874-2	chr6	124966364	124967364	+	906.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1326.0	NM_001164089	26894.0	Mm.244536	NM_012003	ENSMUSG00000030127	Cops7a	D6Ertd35e|SGN7a	COP9 signalosome subunit 7A	protein-coding	1.5	12.5	10.0	14.0	16.5	9.0
Merged-chr5-16502630-2	chr5	16502130	16503130	+	906.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50865.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102290865-4	chr12	102290357	102291357	+	906.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	7216.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	1.5	2.0	2.0	8.5	9.0	8.0
Merged-chr9-50670893-3	chr9	50670384	50671384	+	906.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178118, intron 17 of 19)	B3|SINE|B2	-11104.0	NM_145614	235339.0	Mm.285076	NM_145614	ENSMUSG00000000168	Dlat	6332404G05Rik|DLTA|PDC-E2	dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20120854-4	chr13	20120418	20121418	+	906.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	30411.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	23.5	40.0	43.0	22.0	30.0	21.5
Merged-chr5-62762742-4	chr5	62762246	62763246	+	906.8214109999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	3431.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	3.5	2.5	6.0	3.0	15.0	3.5
Merged-chr5-123661767-4	chr5	123661271	123662271	+	906.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359224, intron 1 of 18)	PB1D7|SINE|Alu	22590.0	NM_019765	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	4.0	21.0	31.0	4.5	13.5	11.5
Merged-chr11-3330695-4	chr11	3330208	3331208	+	906.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178149)	promoter-TSS (NM_178149)	-23.0	NM_178149	216505.0	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81868301-4	chr7	81867838	81868838	+	906.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291282, intron 3 of 9)	intron (NM_001291282, intron 3 of 9)	5651.0	NM_001291282	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-154103775-4	chr1	154103272	154104272	+	906.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	-97415.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96476575-4	chr15	96476079	96477079	+	906.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15736.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114908170-4	chr6	114907662	114908662	+	906.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	Lx7|LINE|L1	13659.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115046627-4	chr8	115046144	115047144	+	906.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019573, intron 8 of 8)	intron (NM_019573, intron 8 of 8)	606992.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-40818664-3	chr6	40818171	40819171	+	906.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68823.0	NM_139296	194357.0	Mm.207087	NM_139296	ENSMUSG00000029885	Moxd2	Dbhl1	monooxygenase, DBH-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67814661-4	chr5	67814143	67815143	+	906.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009727, exon 2 of 36)	exon (NM_009727, exon 2 of 36)	32788.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-67572555-2	chr3	67572034	67573034	+	906.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-10234.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	1.0	0.5	3.5	1.0	0.5	0.0
Merged-chr9-120502225-4	chr9	120501728	120502728	+	906.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9622.0	NM_026892	68969.0	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45342879-2	chr7	45342379	45343379	+	906.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_029741, intron 23 of 29)	intron (NM_029741, intron 23 of 29)	7610.0	NM_010473	15464.0	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160619463-4	chr2	160618966	160619966	+	906.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-26431.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	36.5	52.0	59.5	13.0	63.5	67.5
Merged-chr4-43536696-2	chr4	43536196	43537196	+	906.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011602, intron 43 of 56)	intron (NM_011602, intron 43 of 56)	-13142.0	NM_001277875	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	0.5	2.0	1.0	0.0	0.0	1.0
Merged-chr15-73720949-4	chr15	73720469	73721469	+	906.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2176.0	NM_001166390	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16047175-4	chr19	16046649	16047649	+	906.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62074.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	12.5	10.0	16.5	1.0	4.0	17.0
Merged-chr18-60881512-4	chr18	60881006	60882006	+	906.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30734.0	NM_001038499	545260.0	Mm.20147	NM_001038499	ENSMUSG00000036412	Arsi	BC020108	arylsulfatase i	protein-coding	0.0	8.0	2.5	0.5	0.0	0.5
Merged-chr8-45344473-4	chr8	45343984	45344984	+	906.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153535, exon 10 of 14)	exon (NM_153535, exon 10 of 14)	-11288.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-86695786-4	chr9	86695223	86696223	+	906.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008615, exon 1 of 14)	exon (NM_008615, exon 1 of 14)	191.0	NM_008615	17436.0	Mm.148155	NM_008615	ENSMUSG00000032418	Me1	D9Ertd267e|Mdh-1|Mod-1|Mod1	malic enzyme 1, NADP(+)-dependent, cytosolic	protein-coding	3.0	0.0	0.0	0.0	5.5	0.0
Merged-chr16-30596336-4	chr16	30595837	30596837	+	906.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3386.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24487844-4	chr16	24487351	24488351	+	906.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 3 of 12)	intron (NM_178665, intron 3 of 12)	39760.0	NM_001145952	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116422926-3	chr3	116422434	116423434	+	906.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001173553, intron 1 of 13)	intron (NM_001173553, intron 1 of 13)	1098.0	NM_001080818	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160729961-4	chr2	160729458	160730458	+	906.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1352.0	NM_021280	18803.0	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139238758-3	chr4	139238249	139239249	+	906.7000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	44638.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	22.0	42.0	25.0	61.5	55.0	53.0
Merged-chr14-103011946-4	chr14	103011327	103012327	+	906.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 2 of 2)	L1MA6|LINE|L1	21976.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96483400-3	chr3	96482900	96483900	+	906.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31094.0	NM_001256181	329716.0	Mm.275223	NM_183223	ENSMUSG00000046317	BC107364	D730018G16	cDNA sequence BC107364	protein-coding	0.0	0.0	0.5	0.0	1.0	0.0
Merged-chr13-96543522-3	chr13	96543042	96544042	+	906.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012048)	promoter-TSS (NM_012048)	807.0	NM_023420	68018.0	Mm.24125	NM_023420	ENSMUSG00000021669	Col4a3bp	2810404O15Rik|9230101K08Rik|AU016711|CERT|GPBP	collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-103580384-3	chr8	103579894	103580894	+	906.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-23405.0	NR_045730	71058.0	Mm.67707	NR_045730	ENSMUSG00000110336	4933400L20Rik	-	RIKEN cDNA 4933400L20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-58731030-3	chr7	58730525	58731525	+	906.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009728, intron 1 of 20)	intron (NM_009728, intron 1 of 20)	72823.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	0.0	0.0	0.0	11.0	0.0	0.5
Merged-chr13-107886873-3	chr13	107886387	107887387	+	906.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	3177.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155817766-1	chr1	155817266	155818266	+	906.6666869999999	f0_balb.idr	Intergenic	Intergenic	-4867.0	NM_001024945	104009.0	Mm.27035	NM_023268	ENSMUSG00000033684	Qsox1	1300003H02Rik|QSOX|Qscn6|SOx|b2b2673Clo	quiescin Q6 sulfhydryl oxidase 1	protein-coding	2.5	5.5	4.0	0.0	0.0	1.0
Merged-chr6-149563635-2	chr6	149563135	149564135	+	906.6666869999999	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009753)	TTS (NM_009753)	-2447.0	NM_001360951	436100.0		NM_001360951		Gm21814	6620401J10Rik	predicted gene, 21814	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-30990443-3	chr17	30989950	30990950	+	906.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177465, intron 13 of 21)	intron (NM_177465, intron 13 of 21)	35767.0	NM_177465	52020.0	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75720138-2	chr2	75719638	75720638	+	906.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-15475.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38861084-3	chr6	38860605	38861605	+	906.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 1 of 14)	B4A|SINE|B4	15085.0	NM_010433	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40493561-2	chr12	40493061	40494061	+	906.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	47508.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-146457937-2	chr4	146457437	146458437	+	906.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085522, intron 1 of 3)	G-rich|Low_complexity|Low_complexity	8907.0	NM_001085522	433791.0	Mm.276881	NM_001085522	ENSMUSG00000070605	Zfp992	Gm13251	zinc finger protein 992	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-37673970-4	chr3	37673470	37674470	+	906.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34023.0	NM_011896	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16581855-4	chr7	16581357	16582357	+	906.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172739, intron 1 of 6)	intron (NM_172739, intron 1 of 6)	-31967.0	NR_136928	102634559.0	Mm.421602	NR_136928	ENSMUSG00000100583	Gm29443	-	predicted gene 29443	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55803180-4	chr16	55802682	55803682	+	906.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18956.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-26398733-3	chr12	26398234	26399234	+	906.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080563, intron 1 of 8)	intron (NM_080563, intron 1 of 8)	16276.0	NR_105856	102466676.0		NR_105856	ENSMUSG00000098771	Mir6538	Gm27439|mmu-mir-6538	microRNA 6538	ncRNA	0.0	0.5	1.5	10.0	5.5	6.5
Merged-chr1-173580064-3	chr1	173579554	173580554	+	906.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY3-int|LTR|ERVK	19220.0	NM_001177349	623121.0	Mm.138449	NM_001033384	ENSMUSG00000073491	Ifi213	E030037K03Rik|E430029J22Rik|Pydc4|Pyr-A	interferon activated gene 213	protein-coding	26.0	69.0	47.5	11.5	6.5	4.0
Merged-chr4-8926833-4	chr4	8926399	8927399	+	906.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	175575.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	1.0	3.0	0.0	1.0	4.5	0.5
Merged-chr17-34285756-5	chr17	34285234	34286234	+	906.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010378, intron 1 of 4)	intron (NM_010378, intron 1 of 4)	2037.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	42.0	217.5	57.5	51.0	167.5	40.5
Merged-chr11-78916597-4	chr11	78916087	78917087	+	906.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4200.0	NM_010927	18126.0	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139381446-3	chr5	139380947	139381947	+	906.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	808.0	NM_030258	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-24437930-4	chr8	24437425	24438425	+	906.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026931, exon 1 of 1)	3' UTR (NM_026931, exon 1 of 1)	1021.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-60408937-5	chr3	60408391	60409391	+	906.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63939.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89390122-2	chr3	89389622	89390622	+	906.5625	f1_balb.idr|f1_c57bl6.idr	intron (NM_009565, intron 1 of 2)	intron (NM_009565, intron 1 of 2)	-1742.0	NR_040403	545539.0	Mm.393389	NR_040403	ENSMUSG00000074466	Gm15417	-	predicted gene 15417	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22008211-4	chr11	22007707	22008707	+	906.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252515, intron 23 of 24)	intron (NM_001252515, intron 23 of 24)	-6556.0	NM_011023	18423.0	Mm.129663	NM_011023	ENSMUSG00000005917	Otx1	A730044F23Rik|jv	orthodenticle homeobox 1	protein-coding	4.0	0.0	0.5	0.0	0.0	0.0
Merged-chr11-106480725-4	chr11	106480224	106481224	+	906.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 1 of 21)	intron (NM_023913, intron 1 of 21)	7072.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32982850-3	chr4	32982386	32983386	+	906.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027491)	promoter-TSS (NM_027491)	-112.0	NM_027491	52187.0	Mm.300814	NM_027491	ENSMUSG00000028278	Rragd	5730543C08Rik|AI467523|C030003H22Rik|D4Ertd174e	Ras-related GTP binding D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106232019-3	chr1	106231523	106232523	+	906.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	60154.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20691202-3	chr11	20690682	20691682	+	906.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252503, intron 7 of 7)	intron (NM_001252503, intron 7 of 7)	50374.0	NM_001290545	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	4.5	0.0	1.0	0.0	0.0	2.0
Merged-chr13-14115415-3	chr13	14114909	14115909	+	906.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194262, intron 2 of 23)	RMER16|LTR|ERVK	51625.0	NM_198122	94246.0	Mm.439784	NM_194262	ENSMUSG00000039219	Arid4b	BCAA|BRCAA1|RBBP1L1|Rbp1l1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-43021787-4	chr10	43021308	43022308	+	906.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175407, exon 6 of 7)	exon (NM_175407, exon 6 of 7)	-30646.0	NR_153349	327749.0	Mm.428887	NR_153349		Gm5079	C230040G06	predicted gene 5079	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-33884327-4	chr6	33883813	33884813	+	906.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 14 of 17)	intron (NM_009148, intron 14 of 17)	-145135.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-43739653-4	chr2	43739155	43740155	+	906.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9169.0	NM_001301832	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121381011-2	chr5	121380511	121381511	+	906.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359947, intron 2 of 11)	B3|SINE|B2	4398.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89147231-4	chr15	89146753	89147753	+	906.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011161, intron 1 of 11)	intron (NM_011161, intron 1 of 11)	2353.0	NM_011161	19094.0	Mm.91969	NM_011161	ENSMUSG00000053137	Mapk11	P38b|Prkm11|Sapk2|Sapk2b|p38-2|p38beta|p38beta2	mitogen-activated protein kinase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-30804772-2	chr6	30804272	30805272	+	906.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_149738, intron 21 of 24)	intron (NR_149738, intron 21 of 24)	63473.0	NR_029900	723930.0		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97330319-2	chr7	97329819	97330819	+	906.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2004.0	NM_001039039	622320.0	Mm.334029	NM_001039039	ENSMUSG00000044952	Kctd21	EG622320	potassium channel tetramerisation domain containing 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-24897554-2	chr4	24897054	24898054	+	906.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026742)	promoter-TSS (NM_026742)	-529.0	NM_026742	68493.0	Mm.204831	NM_026742	ENSMUSG00000028261	Ndufaf4	1110007M04Rik|3000003G13Rik|AW214064	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115535672-4	chr11	115535152	115536152	+	906.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133354, intron 1 of 3)	CpG	578.0	NM_133354	170930.0	Mm.29923	NM_133354	ENSMUSG00000020738	Sumo2	SUMO-2|Smt3A|Smt3b|Smt3h2	small ubiquitin-like modifier 2	protein-coding	44.0	58.5	40.0	33.0	63.0	45.5
Merged-chr15-80572534-2	chr15	80572034	80573034	+	906.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289442)	promoter-TSS (NM_001289442)	-63.0	NM_001289442	17444.0	Mm.12947	NM_010815	ENSMUSG00000042351	Grap2	GRAP-2|GRB2L|GRBLG|GRID|Gads|GrbX|Grf40|GrpL|Mona|P38	GRB2-related adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61394465-2	chr14	61393965	61394965	+	906.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008466, intron 2 of 16)	L1M4|LINE|L1	-34020.0	NM_026598	68177.0	Mm.22758	NM_026598	ENSMUSG00000021928	Ebpl	5730442K12Rik|EBRP	emopamil binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65191165-1	chr18	65190665	65191665	+	906.5	f1_c57bl6.idr	intron (NM_001114386, intron 19 of 30)	intron (NM_001114386, intron 19 of 30)	-57696.0	NR_029600	387231.0		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	7.5	6.0	4.5	0.0	5.5	0.0
Merged-chr1-77514719-3	chr1	77514185	77515185	+	906.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007936, intron 1 of 17)	CpG	403.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144706562-3	chr3	144706039	144707039	+	906.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 4 of 10)	intron (NM_001282037, intron 4 of 10)	13796.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118605320-2	chr9	118604820	118605820	+	906.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1389.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-26774478-2	chr10	26773978	26774978	+	906.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	1966.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63109059-2	chr14	63108559	63109559	+	906.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-13403.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-101652630-3	chr14	101652116	101653116	+	906.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1351.0	NM_016723	50933.0	Mm.275970	NM_016723	ENSMUSG00000022111	Uchl3	-	ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155295705-2	chr2	155295208	155296208	+	906.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004721, intron 10 of 11)	intron (NM_001004721, intron 10 of 11)	19344.0	NR_046364	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	4.0	17.5	4.0	1.0	1.0	1.5
Merged-chr13-107798321-2	chr13	107797821	107798821	+	906.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	91743.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122152287-2	chr2	122151787	122152787	+	906.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009735, intron 3 of 3)	intron (NM_009735, intron 3 of 3)	4600.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	23.5	33.5	15.5	7.5	24.5	13.5
Merged-chr8-31121094-4	chr8	31120548	31121548	+	906.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175136, intron 2 of 5)	intron (NM_175136, intron 2 of 5)	9202.0	NM_175136	68867.0	Mm.29532	NM_175136	ENSMUSG00000039328	Rnf122	1110063C11Rik	ring finger protein 122	protein-coding	0.0	17.0	21.0	2.0	15.5	24.5
Merged-chr14-49140896-4	chr14	49140414	49141414	+	906.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-31332.0	NM_027492	70646.0	Mm.275688	NM_027492	ENSMUSG00000036282	Naa30	4930487N19Rik|5730533P17Rik|AI447922|AW322455|Nat12	N(alpha)-acetyltransferase 30, NatC catalytic subunit	protein-coding	8.5	18.0	7.0	6.0	22.0	16.5
Merged-chr10-67585089-4	chr10	67584591	67585591	+	906.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13132.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46444448-3	chr19	46443944	46444944	+	906.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 3 of 11)	intron (NM_001025391, intron 3 of 11)	47548.0	NM_015752	24069.0	Mm.41210	NM_015752	ENSMUSG00000025231	Sufu	Su(fu)	SUFU negative regulator of hedgehog signaling	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-78674848-4	chr1	78674349	78675349	+	906.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028817, intron 2 of 15)	intron (NM_028817, intron 2 of 15)	16409.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30963219-2	chr7	30962719	30963719	+	906.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_017405, intron 3 of 9)	PB1D7|SINE|Alu	-6416.0	NM_011680	22282.0	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-16929969-2	chr5	16929469	16930469	+	906.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	376068.0	NM_001289461	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117437392-4	chr10	117436906	117437906	+	906.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10029.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	19.0	61.5	63.0	21.5	60.5	66.0
Merged-chr14-45607533-4	chr14	45607015	45608015	+	906.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176845, intron 8 of 12)	intron (NM_176845, intron 8 of 12)	50538.0	NR_039593	100628600.0		NR_039593	ENSMUSG00000093167	Mir5131	mmu-mir-5131|mu-mir-5131	microRNA 5131	ncRNA	18.0	20.5	22.5	3.0	3.5	11.0
Merged-chr16-74567578-2	chr16	74567078	74568078	+	906.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358493, intron 1 of 28)	Lx|LINE|L1	-155753.0	NM_175549	268902.0	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.0	0.5	1.0	0.0	0.0	0.0
Merged-chr10-88799484-4	chr10	88798992	88799992	+	906.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175158, intron 19 of 61)	MTD|LTR|ERVL-MaLR	27322.0	NM_175158	70683.0	Mm.29631	NM_175158	ENSMUSG00000004356	Utp20	3830408P06Rik|AA617408|Drim|mDRIM|mDRIN	UTP20 small subunit processome component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20954408-2	chr10	20953908	20954908	+	906.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358561, intron 1 of 22)	intron (NM_001358561, intron 1 of 22)	1861.0	NM_001358561	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67102300-2	chr15	67101800	67102800	+	906.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009177)	TTS (NM_009177)	74582.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0.0	0.0	0.5	0.0	2.0	1.5
Merged-chr9-21143175-2	chr9	21142675	21143675	+	906.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_016742, exon 2 of 8)	exon (NM_016742, exon 2 of 8)	6731.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31415367-2	chr14	31414867	31415867	+	906.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	2310.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86760088-2	chr11	86759588	86760588	+	906.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2521.0	NM_001356393	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65853874-4	chr17	65853384	65854384	+	906.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198949, intron 7 of 9)	intron (NM_001198949, intron 7 of 9)	31039.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	13.5	22.0	6.0	2.5	11.0	8.5
Merged-chr1-180260173-2	chr1	180259673	180260673	+	906.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3873.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-74628003-4	chr5	74627488	74628488	+	906.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359074, intron 2 of 10)	intron (NM_001359074, intron 2 of 10)	49884.0	NM_001159580	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-24550705-3	chr1	24550205	24551205	+	906.4722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007733, intron 4 of 50)	intron (NM_007733, intron 4 of 50)	36732.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	2.0	4.5	9.5	5.0	8.5	5.5
Merged-chr19-32112116-4	chr19	32111671	32112671	+	906.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9031.0	NM_018830	54447.0	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-64050668-4	chr14	64050183	64051183	+	906.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34727.0	NM_001081063	71037.0	Mm.19977	NM_001081063	ENSMUSG00000034623	Prss55	4933401F05Rik	protease, serine 55	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95924465-4	chr4	95923957	95924957	+	906.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113412, intron 15 of 15)	intron (NM_001113412, intron 15 of 15)	42578.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	4.0	1.5	8.0	1.5	1.0	9.0
Merged-chr3-138889418-3	chr3	138888903	138889903	+	906.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_121195, intron 2 of 7)	intron (NR_121195, intron 2 of 7)	147195.0	NM_019571	56224.0	Mm.31927	NM_019571	ENSMUSG00000028152	Tspan5	2810455A09Rik|4930505M03Rik|NET-4|Tm4sf9	tetraspanin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122732178-3	chr5	122731702	122732702	+	906.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145358, exon 16 of 16)	3' UTR (NM_145358, exon 16 of 16)	24658.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	0.5	5.0	0.0	0.0	1.5	0.0
Merged-chr13-29838873-3	chr13	29838369	29839369	+	906.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308486, intron 4 of 5)	intron (NM_001308486, intron 4 of 5)	16804.0	NR_131896	68916.0	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27191203-2	chr3	27190703	27191703	+	906.4375	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	ORR1B2|LTR|ERVL-MaLR	8199.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-72396624-4	chr4	72396105	72397105	+	906.4249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	195361.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57692119-3	chr15	57691618	57692618	+	906.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2549.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-82800636-4	chr3	82800126	82801126	+	906.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75857.0	NM_001277170	633285.0	Mm.265114	NM_001146328	ENSMUSG00000033882	Rbm46	EG633285|Gm761	RNA binding motif protein 46	protein-coding	3.5	0.0	3.0	1.5	6.0	16.0
Merged-chr1-88237565-2	chr1	88237065	88238065	+	906.416626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001281466, exon 13 of 42)	exon (NM_001281466, exon 13 of 42)	10545.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27680715-4	chr2	27680224	27681224	+	906.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	3523.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-98033465-3	chr3	98032979	98033979	+	906.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	19941.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116133969-4	chr6	116133468	116134468	+	906.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177412, exon 3 of 6)	exon (NM_177412, exon 3 of 6)	59406.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-86920704-7	chr3	86920210	86921210	+	906.380981	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001195499, exon 1 of 18)	5' UTR (NM_001195499, exon 1 of 18)	174.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	2.5	0.0	5.0	4.5	17.5	11.5
Merged-chr8-111642736-5	chr8	111642275	111643275	+	906.3800050000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011742)	promoter-TSS (NM_011742)	-668.0	NM_001037665	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	27.5	45.5	52.5	15.5	51.0	40.0
Merged-chr13-54819697-4	chr13	54819283	54820283	+	906.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30378.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	2.5	19.0	13.0	6.5	18.5	12.5
Merged-chr10-63347354-4	chr10	63346865	63347865	+	906.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-8330.0	NM_001159589	93759.0	Mm.351459	NM_019812	ENSMUSG00000020063	Sirt1	AA673258|SIR2L1|Sir2|Sir2a|Sir2alpha	sirtuin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40459108-4	chr12	40458615	40459615	+	906.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	13062.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86655802-4	chr11	86655315	86656315	+	906.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 5 of 11)	intron (NM_001356531, intron 5 of 11)	15460.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173350126-3	chr1	173349621	173350621	+	906.355591	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053199, intron 1 of 8)	intron (NM_053199, intron 1 of 8)	-16618.0	NM_010045	13349.0	Mm.6393	NM_010045	ENSMUSG00000037872	Ackr1	AA162249|CCBP1|CD234|Darc|Dfy|ESTM35|FY|GPD	atypical chemokine receptor 1 (Duffy blood group)	protein-coding	5.5	0.0	2.5	2.0	2.0	2.5
Merged-chr17-15812596-4	chr17	15812083	15813083	+	906.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178615, intron 2 of 2)	intron (NM_178615, intron 2 of 2)	14003.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	7.5	8.0	5.5	2.5	10.5	10.0
Merged-chr18-75262700-8	chr18	75262205	75263205	+	906.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027727, intron 16 of 16)	intron (NM_027727, intron 16 of 16)	34612.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	3.0	0.0	4.5	0.0	14.5	9.0
Merged-chr7-19764134-4	chr7	19763676	19764676	+	906.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020486, exon 8 of 15)	exon (NM_020486, exon 8 of 15)	6356.0	NM_020486	57278.0	Mm.29236	NM_020486	ENSMUSG00000002980	Bcam	1200005K12Rik|B-CAM|Gplu|Lu	basal cell adhesion molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3813948-2	chr12	3813448	3814448	+	906.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	6788.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10153081-3	chr17	10152584	10153584	+	906.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	166277.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43391920-4	chr5	43391449	43392449	+	906.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123620.0	NM_001135172	109323.0	Mm.275553	NM_175425	ENSMUSG00000061535	C1qtnf7	5530401N20Rik|8430425G24Rik|Ctrp7	C1q and tumor necrosis factor related protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59510153-4	chr13	59509664	59510664	+	906.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001048008, intron 11 of 17)	intron (NM_001048008, intron 11 of 17)	34287.0	NM_001284221	67269.0	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	1.5	19.5	0.0	0.0	1.5	3.0
Merged-chr7-143624777-4	chr7	143624292	143625292	+	906.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175649, intron 1 of 7)	intron (NM_175649, intron 1 of 7)	3053.0	NM_175649	244237.0	Mm.247498	NM_175649	ENSMUSG00000045362	Tnfrsf26	Tnfrh3|Tnfrsf24	tumor necrosis factor receptor superfamily, member 26	protein-coding	1.0	18.5	9.0	14.0	12.0	3.0
Merged-chr16-78215981-3	chr16	78215488	78216488	+	906.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	39466.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129787111-1	chr4	129786611	129787611	+	906.3333130000001	f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-33368.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	4.0	23.0	36.0	25.5	26.0	24.0
Merged-chr17-81599348-3	chr17	81598846	81599846	+	906.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	139041.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166301412-3	chr2	166300912	166301912	+	906.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27504.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	0.0	0.0	4.0	0.0	0.0	3.0
Merged-chr19-56742170-4	chr19	56741616	56742616	+	906.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19744.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-16310855-3	chr2	16310355	16311355	+	906.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45449.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7880164-4	chr9	7879671	7880671	+	906.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30D_MM|LTR|ERV1	-7001.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115556383-4	chr5	115555846	115556846	+	906.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133915)	TTS (NM_133915)	-3121.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	1.0	3.0	1.0	5.0	0.0	5.0
Merged-chr18-23811009-2	chr18	23810509	23811509	+	906.2999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	7039.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-16588858-4	chr12	16588364	16589364	+	906.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130412, intron 1 of 20)	intron (NM_001130412, intron 1 of 20)	906.0	NM_015763	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	8.5	19.0	24.0	31.5	33.0	38.0
Merged-chr3-16086739-4	chr3	16086235	16087235	+	906.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80403.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-72253780-4	chr4	72253281	72254281	+	906.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	52537.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101648832-4	chr4	101648324	101649324	+	906.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175036, intron 1 of 3)	intron (NM_175036, intron 1 of 3)	1041.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	4.0	4.5	12.5	3.5	6.5	10.0
Merged-chr2-112267054-4	chr2	112266541	112267541	+	906.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133649, exon 1 of 25)	exon (NM_133649, exon 1 of 25)	727.0	NM_133649	107723.0	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	12.5	60.5	25.5	12.0	43.5	26.0
Merged-chr8-117362532-4	chr8	117362043	117363043	+	906.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	13373.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-56207317-4	chr9	56206825	56207825	+	906.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172924, exon 7 of 7)	exon (NM_172924, exon 7 of 7)	-46255.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73324855-7	chr14	73324361	73325361	+	906.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 1 of 26)	intron (NM_009029, intron 1 of 26)	961.0	NM_009029	19645.0	Mm.273862	NM_009029	ENSMUSG00000022105	Rb1	Rb|Rb-1|pRb|pp105	RB transcriptional corepressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79291386-4	chr11	79290899	79291899	+	906.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-36704.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0.0	0.0	0.5	2.0	1.0	1.0
Merged-chr19-8997740-3	chr19	8997232	8998232	+	906.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039959, intron 1 of 5)	intron (NM_001039959, intron 1 of 5)	8448.0	NM_001286518	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	1.0	4.0	1.0	0.0	0.0	3.5
Merged-chr15-67124918-4	chr15	67124420	67125420	+	906.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 3 of 8)	MIRc|SINE|MIR	51962.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	2.0	1.5	2.0	0.0	4.0	0.0
Merged-chr1-172027387-4	chr1	172026873	172027873	+	906.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033509)	promoter-TSS (NM_033509)	-78.0	NM_033509	93840.0	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	VANGL planar cell polarity 2	protein-coding	3.0	4.5	1.0	1.5	0.0	3.0
Merged-chr19-37963106-4	chr19	37962586	37963586	+	906.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 19 of 53)	L1MB3|LINE|L1	80491.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	112.5	186.5	154.5	104.5	220.5	150.5
Merged-chr1-170576563-4	chr1	170576047	170577047	+	906.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 1 of 9)	intron (NM_001109985, intron 1 of 9)	13302.0	NM_001109985	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-132865302-3	chr3	132864804	132865804	+	906.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102297, intron 1 of 3)	intron (NR_102297, intron 1 of 3)	13292.0	NR_102297	101243624.0	Mm.306256	NR_102297	ENSMUSG00000106230	Gm29811	-	predicted gene, 29811	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118959880-4	chr2	118959380	118960380	+	906.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33383.0	NM_028117	72136.0	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	11.5	34.5	36.5	1.5	1.0	6.5
Merged-chr14-33243498-4	chr14	33242994	33243994	+	906.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	26671.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24442493-4	chr13	24442001	24443001	+	906.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111110, intron 11 of 16)	intron (NM_001111110, intron 11 of 16)	27379.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170307672-4	chr2	170307189	170308189	+	906.2416380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48672.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-52168669-4	chr5	52168161	52169161	+	906.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042620, intron 5 of 11)	intron (NM_001042620, intron 5 of 11)	21885.0	NR_104311	13204.0	Mm.993	NM_007839	ENSMUSG00000029169	Dhx15	DBP1|DEAH9|Ddx15|HRH2|mDEAH9	DEAH (Asp-Glu-Ala-His) box polypeptide 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45412506-4	chr9	45412005	45413005	+	906.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6428.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	2.5	0.0	3.5	0.0	4.0	0.5
Merged-chr4-126554665-4	chr4	126554171	126555171	+	906.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-2309.0	NM_175554	269582.0	Mm.243962	NM_175554	ENSMUSG00000042489	Clspn	B130025E01|C85083|E130314M08Rik	claspin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147532095-4	chr5	147531606	147532606	+	906.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028291, intron 13 of 18)	intron (NM_028291, intron 13 of 18)	101950.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	10.5	7.0	7.5	0.0	9.5	7.0
Merged-chr16-21702853-4	chr16	21702365	21703365	+	906.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8200.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122109983-4	chr5	122109469	122110469	+	906.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183307, intron 11 of 12)	intron (NM_183307, intron 11 of 12)	9018.0	NM_010861	17906.0	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83122234-4	chr15	83121757	83122757	+	906.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358061, intron 1 of 3)	intron (NM_001358061, intron 1 of 3)	544.0	NM_001358061	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110771081-4	chr12	110770563	110771563	+	906.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347428, intron 1 of 2)	ORR1A4|LTR|ERVL-MaLR	33131.0	NM_001347428	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125546526-3	chr7	125546031	125547031	+	906.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC|LINE|L1	-5751.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	19.5	42.0	26.5	20.0	40.0	16.0
Merged-chr6-113302438-4	chr6	113301945	113302945	+	906.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170673, intron 19 of 19)	intron (NM_170673, intron 19 of 19)	-4692.0	NM_030178	78783.0	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44087819-4	chr16	44087306	44088306	+	906.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358203, intron 14 of 14)	intron (NM_001358203, intron 14 of 14)	-45798.0	NM_001359085	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34196069-4	chr18	34195563	34196563	+	906.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24921.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-56134972-4	chr13	56134467	56135467	+	906.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159513, intron 1 of 8)	CpG	583.0	NM_012015	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	3.0	7.0	5.0	3.0	17.5	4.5
Merged-chr1-138153310-4	chr1	138152807	138153807	+	906.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	21819.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64201832-4	chr17	64201327	64202327	+	906.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	130056.0	NM_144859	224938.0	Mm.489681	NM_144859	ENSMUSG00000024083	Pja2	AI447901|AL022700|Neurodap1|mKIAA0438	praja ring finger ubiquitin ligase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-76266898-3	chr6	76266408	76267408	+	906.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-975569.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	6.5	0.0	6.5	5.0	12.5	10.0
Merged-chr14-60284051-4	chr14	60283567	60284567	+	906.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144843, intron 4 of 13)	L1_Mur3|LINE|L1	18862.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	49.5	130.0	71.0	34.5	122.0	34.0
Merged-chr11-76900215-4	chr11	76899692	76900692	+	906.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4353.0	NM_025655	66601.0	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-104032708-4	chr13	104032214	104033214	+	906.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029447, intron 12 of 12)	intron (NM_029447, intron 12 of 12)	76900.0	NM_029447	75805.0	Mm.127692	NM_029447	ENSMUSG00000021710	Nln	4930472G13Rik|C79345	neurolysin (metallopeptidase M3 family)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130253418-4	chr5	130252922	130253922	+	906.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023248, intron 2 of 4)	intron (NM_023248, intron 2 of 4)	2108.0	NM_023248	66711.0	Mm.280484	NM_023248	ENSMUSG00000025337	Sbds	4733401P19Rik|AI836084|CGI-97|SDS	SBDS ribosome maturation factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25422754-4	chr2	25422184	25423184	+	906.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289453)	promoter-TSS (NM_001289453)	-558.0	NM_001289453	14347.0	Mm.1203	NM_013524	ENSMUSG00000036587	Fut7	AI853193|FTVII|Fuc-TVII|FucT-VII	fucosyltransferase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62043381-4	chr15	62042877	62043877	+	906.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	4120.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	14.5	38.5	34.5	20.0	13.5	24.5
Merged-chr8-120738931-4	chr8	120738410	120739410	+	906.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001301811, exon 1 of 9)	5' UTR (NM_001301811, exon 1 of 9)	271.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-84569741-3	chr9	84569240	84570240	+	906.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-204658.0	NR_040739	75253.0	Mm.401984	NR_040739	ENSMUSG00000099724	4930554C24Rik	-	RIKEN cDNA 4930554C24 gene	ncRNA	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr11-94404812-4	chr11	94404304	94405304	+	906.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11828.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40538484-4	chr12	40537992	40538992	+	906.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	92439.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62582824-3	chr10	62582344	62583344	+	906.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019553, intron 14 of 14)	intron (NM_019553, intron 14 of 14)	-4387.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75676464-4	chr10	75675950	75676950	+	906.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172549, intron 29 of 36)	MIR3|SINE|MIR	-32442.0	NM_027890	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120833320-4	chr7	120832834	120833834	+	906.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-9497.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-44989288-4	chr14	44988667	44989667	+	906.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008964, exon 1 of 2)	exon (NM_008964, exon 1 of 2)	1056.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88409982-4	chr10	88409497	88410497	+	906.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004164, intron 2 of 20)	MLTR25A|LTR|ERVK	30585.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31570957-4	chr16	31570471	31571471	+	906.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47162.0	NM_001357871	224098.0	Mm.125439	NM_001357870		Gm536	Gm1777	predicted gene 536	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157448026-3	chr2	157447524	157448524	+	906.0277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 2 of 13)	B3A|SINE|B2	23731.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	8.0	11.0	7.5	12.0	26.0	12.5
Merged-chr11-113811394-3	chr11	113810891	113811891	+	906.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172800, intron 36 of 44)	intron (NM_172800, intron 36 of 44)	-59576.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-40020726-1	chr15	40020226	40021226	+	906.0	f0_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-24462.0	NR_155348	102636079.0	Mm.421381	NR_155348	ENSMUSG00000115142	Gm33251	-	predicted gene, 33251	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173020510-2	chr2	173020010	173021010	+	906.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1392.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	2.0	2.0	2.0	2.0	2.0	2.0
Merged-chr6-38718890-2	chr6	38718390	38719390	+	906.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001294144, exon 11 of 15)	exon (NM_001294144, exon 11 of 15)	55821.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24476065-2	chr17	24475528	24476528	+	906.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175682)	TTS (NM_175682)	2144.0	NM_175682	319259.0	Mm.258355	NM_175682	ENSMUSG00000045744	Bricd5	9930021D14Rik	BRICHOS domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84099857-4	chr17	84099358	84100358	+	906.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21198.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-80310131-2	chr13	80309631	80310631	+	906.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-573253.0	NR_153410	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3352910-2	chr12	3352410	3353410	+	906.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-12222.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123039555-2	chr8	123039055	123040055	+	906.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	2729.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	2.5	10.0	6.0	2.0	5.0	2.5
Merged-chr11-79112952-3	chr11	79112486	79113486	+	906.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	33487.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39478090-2	chr1	39477590	39478590	+	906.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357521, intron 1 of 19)	intron (NM_001357521, intron 1 of 19)	657.0	NM_018775	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124778071-2	chr2	124777571	124778571	+	906.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	124490.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-86879770-2	chr9	86879270	86880270	+	906.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357770, intron 1 of 29)	CpG	679.0	NM_001277986	20616.0	Mm.281651	NM_013669	ENSMUSG00000033419	Snap91	91kDa|AP180|F1-20|mKIAA0656	synaptosomal-associated protein 91	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr10-20723414-4	chr10	20722943	20723943	+	906.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 1 of 12)	intron (NM_013875, intron 1 of 12)	1635.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-110959545-2	chr13	110959045	110960045	+	906.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD|LINE|L1	-55699.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115066097-2	chr6	115065597	115066597	+	906.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28223.0	NM_026894	68971.0	Mm.24937	NM_026894	ENSMUSG00000030316	Tamm41	1500001M20Rik|TAM41	TAM41 mitochondrial translocator assembly and maintenance homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-93555437-2	chr15	93554937	93555937	+	906.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033217, intron 1 of 7)	MTD|LTR|ERVL-MaLR	40454.0	NM_001033217	106042.0	Mm.150314	NM_001033217	ENSMUSG00000036158	Prickle1	1110058P22Rik|AW215793|Prickle|b2b019Clo|mpk1	prickle planar cell polarity protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-17820655-1	chr5	17820155	17821155	+	906.0	f0_balb.idr	intron (NM_001159557, intron 4 of 15)	intron (NM_001159557, intron 4 of 15)	15241.0	NM_001159555	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102035179-2	chr7	102034679	102035679	+	906.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 4 of 8)	B3|SINE|B2	-17024.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0.0	0.0	0.5	0.0	1.0	0.0
Merged-chr7-43944931-3	chr7	43944433	43945433	+	906.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033120)	promoter-TSS (NR_033120)	-79.0	NR_033120	16604.0	Mm.195787	NR_033120	ENSMUSG00000060161	Klk1b7-ps	1700127D06Rik|Klk-ps2|mGK-7	kallikrein 1-related peptidase b7, pseudogene	pseudo	0.0	0.0	1.5	0.0	2.5	1.5
Merged-chr8-11554860-1	chr8	11554360	11555360	+	906.0	f0_c57.idr	promoter-TSS (NM_001302458)	promoter-TSS (NM_001302458)	-902.0	NM_001302458	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-181545585-3	chr1	181545088	181546088	+	906.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34137.0	NM_207280	403180.0	Mm.220754	NM_207280	ENSMUSG00000050625	Ccdc121	6530421E24Rik|Gm755	coiled-coil domain containing 121	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-33965268-3	chr13	33964777	33965777	+	906.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163239, intron 1 of 5)	intron (NM_001163239, intron 1 of 5)	618.0	NM_001163241	18105.0	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	N-ribosyldihydronicotinamide quinone reductase 2	protein-coding	0.0	5.5	2.0	2.5	2.0	3.0
Merged-chr5-107961538-3	chr5	107961128	107962128	+	906.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	intron (NM_026062, intron 1 of 4)	25449.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	1.0	25.0	8.5	13.5	11.0	11.0
Merged-chr2-26133412-1	chr2	26132912	26133912	+	906.0	f0_balb.idr	Intergenic	Intergenic	6131.0	NM_001256522	109299.0	Mm.389259	NM_001256521		Tmem250-ps	AI551216|C330006A16Rik	transmembrane protein 250, pseudogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-51706991-3	chr12	51706492	51707492	+	906.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001329698, intron 1 of 5)	intron (NM_001329698, intron 1 of 5)	-15078.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64201295-2	chr5	64200795	64201795	+	906.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-29062.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25377606-1	chr14	25377106	25378106	+	906.0	f0_balb.idr	Intergenic	Intergenic	-81579.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89515659-4	chr3	89515176	89516176	+	906.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4488.0	NM_080466	140493.0	Mm.120250	NM_080466	ENSMUSG00000000794	Kcnn3	KCa2.3|SK3|SKCA3	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131142797-4	chr2	131142290	131143290	+	906.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028306, intron 10 of 12)	intron (NM_028306, intron 10 of 12)	15378.0	NM_028306	72630.0	Mm.277465	NM_028306	ENSMUSG00000074793	Hspa12b	2700081N06Rik	heat shock protein 12B	protein-coding	0.0	0.0	1.5	11.5	0.0	0.0
Merged-chr15-85832798-2	chr15	85832298	85833298	+	906.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033337, intron 1 of 13)	intron (NM_001033337, intron 1 of 13)	494.0	NM_001033337	239570.0	Mm.151748	NM_001033337	ENSMUSG00000035944	Ttc38	9030019H09	tetratricopeptide repeat domain 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-14130980-3	chr16	14130468	14131468	+	906.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081154, intron 16 of 26)	intron (NM_001081154, intron 16 of 26)	28306.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157095457-5	chr2	157094871	157095871	+	905.994263	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177439, intron 5 of 5)	intron (NM_001177439, intron 5 of 5)	8316.0	NM_001177439	383766.0	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69754849-4	chr11	69754361	69755361	+	905.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291068, intron 1 of 28)	MER119|DNA|hAT-Charlie	3772.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.0	6.0	1.5	2.5	1.0	5.0
Merged-chr8-11215434-4	chr8	11214939	11215939	+	905.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009931, intron 40 of 51)	intron (NM_009931, intron 40 of 51)	-97366.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41288976-4	chr10	41288463	41289463	+	905.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133999, intron 1 of 22)	intron (NM_133999, intron 1 of 22)	14278.0	NM_133999	103199.0	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74819861-4	chr17	74819508	74820508	+	905.9541630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152817, intron 13 of 19)	RMER19C|LTR|ERVK	102258.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	1.5	12.0	10.0	0.0	1.0	8.5
Merged-chr12-36214522-3	chr12	36214026	36215026	+	905.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361098, intron 5 of 8)	intron (NM_001361098, intron 5 of 8)	3692.0	NM_027699	71156.0	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	0.5	0.0	1.0	5.5	0.0	0.0
Merged-chr6-137455774-3	chr6	137455263	137456263	+	905.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 25 of 26)	intron (NM_011216, intron 25 of 26)	45042.0	NM_001164403	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55737625-7	chr14	55737137	55738137	+	905.9285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8047.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-76900473-7	chr8	76900016	76901016	+	905.9285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028579, exon 1 of 2)	non-coding (NR_028579, exon 1 of 2)	105.0	NR_028579	102640923.0	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	-	predicted gene 10649	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120276504-4	chr14	120276011	120277011	+	905.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	842.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88698973-4	chr4	88698498	88699498	+	905.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7730.0	NM_008336	15974.0	Mm.377093	NM_008336	ENSMUSG00000100079	Ifnab	-	interferon alpha B	protein-coding	3.5	0.0	6.0	0.0	0.0	0.0
Merged-chr1-190170720-4	chr1	190170232	190171232	+	905.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008937)	promoter-TSS (NM_008937)	95.0	NM_008937	19130.0	Mm.132579	NM_008937	ENSMUSG00000010175	Prox1	A230003G05Rik|PROX-1	prospero homeobox 1	protein-coding	3.5	3.0	5.5	3.5	3.0	4.5
Merged-chr11-85811374-4	chr11	85810906	85811906	+	905.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_077059, intron 1 of 4)	intron (NR_077059, intron 1 of 4)	20982.0	NR_077059	69909.0	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107570087-2	chr9	107569587	107570587	+	905.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010489, intron 1 of 3)	intron (NM_010489, intron 1 of 3)	924.0	NM_010489	15587.0	Mm.4834	NM_010489	ENSMUSG00000010047	Hyal2	AI256841|AU020858|AW555733	hyaluronoglucosaminidase 2	protein-coding	4.0	27.5	5.5	11.5	29.5	6.0
Merged-chr10-22200433-3	chr10	22199928	22200928	+	905.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	RLTR45|LTR|ERVK	26526.0	NM_009018	19370.0	Mm.439724	NM_009018		Raet1c	RAE-1gamma	retinoic acid early transcript gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43480411-3	chr13	43479890	43480890	+	905.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019930, intron 1 of 13)	intron (NM_019930, intron 1 of 13)	583.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13324228-4	chr10	13323747	13324747	+	905.8833619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033257)	promoter-TSS (NM_001033257)	42.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	6.0	15.0	15.0	0.0	12.0	11.5
Merged-chr13-59976135-2	chr13	59975660	59976660	+	905.875	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53551.0	NR_046142	328263.0	Mm.123405	NR_046142	ENSMUSG00000114531	A530065N20Rik	A530065N20	RIKEN cDNA A530046M15 gene	ncRNA	0.0	7.0	4.5	20.0	29.5	29.0
Merged-chr15-7137105-4	chr15	7136630	7137630	+	905.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113386, intron 2 of 16)	intron (NM_001113386, intron 2 of 16)	-3412.0	NM_013584	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103958362-4	chr2	103957864	103958864	+	905.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142337, intron 1 of 3)	L2b|LINE|L2	369.0	NM_001142337	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-59208190-4	chr3	59207701	59208701	+	905.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028808, exon 2 of 2)	3' UTR (NM_028808, exon 2 of 2)	2681.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84200100-4	chr1	84199595	84200595	+	905.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003948, intron 1 of 2)	MLT1H1|LTR|ERVL-MaLR	18866.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-111249936-2	chr7	111249460	111250460	+	905.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-127285.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88426554-4	chr10	88425979	88426979	+	905.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004164, intron 7 of 20)	intron (NM_001004164, intron 7 of 20)	-33108.0	NM_011517	20962.0	Mm.297977	NM_011517	ENSMUSG00000020059	Sycp3	Cor1|Scp3	synaptonemal complex protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53850112-4	chr11	53849613	53850613	+	905.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 1 of 3)	intron (NR_033332, intron 1 of 3)	9143.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97394349-3	chr11	97393858	97394858	+	905.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_138657, exon 10 of 10)	3' UTR (NM_138657, exon 10 of 10)	31807.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	0.0	0.0	1.5	0.0	2.0	0.5
Merged-chr14-121346732-4	chr14	121346219	121347219	+	905.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145465, intron 1 of 10)	intron (NM_145465, intron 1 of 10)	32511.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26531026-4	chr17	26530586	26531586	+	905.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-22614.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	29.5	67.0	36.5	34.5	40.5	37.0
Merged-chr1-131432100-4	chr1	131431607	131432607	+	905.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 3 of 22)	intron (NM_001081011, intron 3 of 22)	95254.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0.0	4.0	0.5	0.0	3.5	1.5
Merged-chr9-99158316-4	chr9	99157812	99158812	+	905.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18101.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83901305-2	chr8	83900805	83901805	+	905.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_181039, intron 1 of 22)	intron (NM_181039, intron 1 of 22)	1207.0	NM_181039	330814.0	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr10-80087664-4	chr10	80087151	80088151	+	905.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359637, intron 1 of 3)	ID_B1|SINE|B4	-12212.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31004384-4	chr5	31003892	31004892	+	905.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35715.0	NM_053085	69852.0	Mm.57874	NM_053085	ENSMUSG00000006642	Tcf23	2010002O16Rik|Out|bHLHa24	transcription factor 23	protein-coding	14.5	6.5	0.5	0.0	4.0	1.0
Merged-chr2-104816006-7	chr2	104815502	104816502	+	905.8095089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001123327, intron 1 of 11)	intron (NM_001123327, intron 1 of 11)	694.0	NM_001123327	99003.0	Mm.274314	NM_001123327	ENSMUSG00000074994	Qser1	4732486I23Rik|AI502974	glutamine and serine rich 1	protein-coding	2.0	6.0	2.5	7.0	16.0	7.5
Merged-chr4-124658848-2	chr4	124658348	124659348	+	905.8000490000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_011141, exon 1 of 1)	exon (NM_011141, exon 1 of 1)	1202.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-28796517-3	chr2	28796013	28797013	+	905.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033874, intron 11 of 12)	intron (NM_001033874, intron 11 of 12)	43847.0	NM_172977	269252.0	Mm.26043	NM_172977	ENSMUSG00000035666	Gtf3c4	5330400C03|AI426938|AU014771|AU017413|KAT12|TFIIIC90	general transcription factor IIIC, polypeptide 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25413744-4	chr14	25413255	25414255	+	905.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45430.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	2.0	0.0	4.5	2.0
Merged-chr8-122938733-3	chr8	122938236	122939236	+	905.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	90362.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	10.5	8.0	0.5	2.0	14.5	3.5
Merged-chr4-15989062-3	chr4	15988547	15989547	+	905.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013752, exon 14 of 16)	exon (NM_013752, exon 14 of 16)	24791.0	NM_001355615	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	0.0	0.5	0.0	0.0	4.5	0.0
Merged-chr5-115510020-10	chr5	115509435	115510435	+	905.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	3259.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	7.5	30.0	21.5	14.0	63.5	24.0
Merged-chr13-110538450-5	chr13	110538025	110539025	+	905.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143481.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	1.0	0.0	3.0	1.5	4.0	1.5
Merged-chr15-62385596-4	chr15	62385079	62386079	+	905.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-166128.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	5.5	16.0	10.0	6.0	17.0	12.5
Merged-chr6-84737143-4	chr6	84736637	84737637	+	905.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 20 of 21)	intron (NM_177077, intron 20 of 21)	-143229.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-48414354-1	chr9	48413854	48414854	+	905.75	f0_c57.idr	Intergenic	RLTR14-int|LTR|ERV1	-39990.0	NR_026561	667933.0	Mm.491076	NR_026561		Gm8884	EG667933	predicted gene 8884	ncRNA	22.5	39.5	40.0	1.0	2.5	1.0
Merged-chr9-60837550-4	chr9	60837051	60838051	+	905.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357408, intron 1 of 19)	intron (NM_001357408, intron 1 of 19)	43109.0	NM_001357407	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128828673-4	chr2	128828162	128829162	+	905.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355629, intron 5 of 18)	intron (NM_001355629, intron 5 of 18)	10359.0	NM_001355629	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84163307-3	chr12	84162735	84163735	+	905.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 3 of 12)	intron (NM_001163501, intron 3 of 12)	-14746.0	NM_027438	70481.0	Mm.444348	NM_027438	ENSMUSG00000054383	Pnma1	5730402C15Rik	paraneoplastic antigen MA1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24104076-4	chr2	24103581	24104581	+	905.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	-7486.0	NR_110359	227606.0	Mm.301625	NM_199059	ENSMUSG00000061809	Tbpl2	Gm348|Trf3	TATA box binding protein like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122580640-3	chr2	122580145	122581145	+	905.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30632.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	13.5	19.0	26.0	22.5	38.5	32.0
Merged-chr1-88265926-2	chr1	88265426	88266426	+	905.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_198652, exon 8 of 8)	exon (NM_198652, exon 8 of 8)	3482.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22653170-4	chr11	22652695	22653695	+	905.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	140912.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	2.0	46.5	33.5	15.5	41.0	42.0
Merged-chr9-88548158-5	chr9	88547695	88548695	+	905.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001142943, exon 1 of 6)	5' UTR (NM_001142943, exon 1 of 6)	175.0	NM_001142943	71640.0	Mm.259988	NM_001142943	ENSMUSG00000032425	Zfp949	4930422I07Rik|Nczf	zinc finger protein 949	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118831739-3	chr14	118831261	118832261	+	905.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160097, intron 1 of 3)	intron (NM_001160097, intron 1 of 3)	-23189.0	NM_021386	58187.0	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding	2.5	2.0	0.0	1.5	5.0	1.5
Merged-chr15-68053097-3	chr15	68052608	68053608	+	905.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	205748.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29624005-3	chr6	29623500	29624500	+	905.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14151.0	NM_001347079	320938.0	Mm.276381	NM_177296	ENSMUSG00000012535	Tnpo3	5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133	transportin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85024563-4	chr8	85024068	85025068	+	905.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019652, intron 1 of 6)	intron (NM_019652, intron 1 of 6)	719.0	NM_001357203	56495.0	Mm.41475	NM_019652	ENSMUSG00000052456	Asna1	1810048H22Rik|ArsA	arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	protein-coding	81.0	69.5	53.5	24.0	75.5	70.0
Merged-chr19-46991324-4	chr19	46990805	46991805	+	905.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164363, intron 1 of 17)	intron (NM_001164363, intron 1 of 17)	-21738.0	NM_001164365	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4813551-4	chr7	4813084	4814084	+	905.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-1244.0	NM_133777	77891.0	Mm.389787	NM_133777	ENSMUSG00000060860	Ube2s	0910001J09Rik|6720465F12Rik|AA409170|E2-EPF	ubiquitin-conjugating enzyme E2S	protein-coding	70.0	110.5	80.0	74.5	130.5	92.5
Merged-chr18-62173473-3	chr18	62173004	62174004	+	905.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6477.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5295925-3	chr17	5295435	5296435	+	905.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 8 of 19)	intron (NM_001085355, intron 8 of 19)	122832.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-33005589-3	chr5	33005091	33006091	+	905.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13225.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	7.0	29.0	1.5	6.0	1.5	2.0
Merged-chr1-74702481-3	chr1	74701959	74702959	+	905.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-11076.0	NM_024264	104086.0	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57473484-4	chr9	57472993	57473993	+	905.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5433.0	NM_001301635	56807.0	Mm.102278	NM_020270	ENSMUSG00000040722	Scamp5	Sc5	secretory carrier membrane protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138998251-6	chr5	138997766	138998766	+	905.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3313.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156002012-4	chr1	156001488	156002488	+	905.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-28733.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	59.0	120.0	96.0	23.5	48.0	38.0
Merged-chr5-59853131-3	chr5	59852624	59853624	+	905.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13C2|LTR|ERVK	132878.0	NR_040683	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124747901-2	chr6	124747401	124748401	+	905.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_007881, exon 5 of 10)	exon (NM_007881, exon 5 of 10)	-6822.0	NM_013535	14790.0	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-38982074-2	chr19	38981574	38982574	+	905.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-24945.0	NM_028089	72082.0	Mm.142581	NM_028089	ENSMUSG00000025002	Cyp2c55	2010318C06Rik	cytochrome P450, family 2, subfamily c, polypeptide 55	protein-coding	0.0	5.0	1.0	0.0	5.0	1.0
Merged-chr1-138822466-4	chr1	138821971	138822971	+	905.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	19973.0	NM_001042577	16876.0	Mm.250732	NM_010714	ENSMUSG00000019230	Lhx9	3110009O07Rik|BB104635|LH2B	LIM homeobox protein 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11061042-4	chr19	11060551	11061551	+	905.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-10485.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29496508-4	chr17	29495917	29496917	+	905.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008842)	TTS (NM_008842)	5372.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr11-117912896-4	chr11	117912397	117913397	+	905.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39371.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-38402462-4	chr5	38401961	38402961	+	905.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012363, intron 6 of 11)	ORR1D2|LTR|ERVL-MaLR	58072.0	NR_046191	78172.0	Mm.243835	NR_046191	ENSMUSG00000106932	4930487D11Rik	-	RIKEN cDNA 4930487D11 gene	ncRNA	3.5	4.0	9.5	2.5	11.0	10.5
Merged-chr7-110386503-4	chr7	110386007	110387007	+	905.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 17 of 40)	intron (NM_177324, intron 17 of 40)	164804.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44565321-4	chr10	44564845	44565845	+	905.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106597.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19011647-4	chr3	19011146	19012146	+	905.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	151449.0	NM_028840	74252.0	Mm.200383	NM_028840	ENSMUSG00000027599	Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding	0.0	3.5	3.5	0.0	0.0	0.0
Merged-chr6-72115070-4	chr6	72114569	72115569	+	905.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	7871.0	NR_045163	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100669790-3	chr13	100669180	100670180	+	905.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_183115, exon 1 of 12)	5' UTR (NM_183115, exon 1 of 12)	199.0	NM_001168386	76041.0	Mm.23977	NM_183115	ENSMUSG00000048924	Ccdc125	5830436D01Rik|AL023012	coiled-coil domain containing 125	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43039614-3	chr5	43039140	43040140	+	905.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-193823.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-4770555-3	chr13	4770061	4771061	+	905.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-161397.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	7.0	26.0	14.0	14.5	25.5	18.0
Merged-chr3-37139368-3	chr3	37138865	37139865	+	905.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13411.0	NM_008366	16183.0	Mm.14190	NM_008366	ENSMUSG00000027720	Il2	Il-2	interleukin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121460649-3	chr10	121460152	121461152	+	905.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	15598.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	74.0	88.5	61.0	75.5	151.0	97.5
Merged-chr18-62186214-3	chr18	62185723	62186723	+	905.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6123.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	49.5	38.5	34.5	54.5	79.0	64.0
Merged-chr10-98882690-4	chr10	98882182	98883182	+	905.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31960.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-31130080-4	chr9	31129596	31130596	+	905.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011176, intron 1 of 18)	intron (NM_011176, intron 1 of 18)	1703.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-75203018-4	chr3	75202551	75203551	+	905.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-59279.0	NM_172515	213234.0	Mm.80075	NM_172515	ENSMUSG00000034151	Zbbx	4931432L23	zinc finger, B-box domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24780419-4	chr5	24779926	24780926	+	905.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22583.0	NM_153076	214301.0	Mm.63484	NM_153076	ENSMUSG00000038135	Crygn	-	crystallin, gamma N	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3137449-4	chr11	3136929	3137929	+	905.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 22 of 32)	intron (NM_030207, intron 22 of 32)	13408.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71144053-6	chr6	71143551	71144551	+	905.5610960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178413, intron 1 of 9)	CpG	329.0	NM_001033929	232078.0	Mm.37547	NM_178413	ENSMUSG00000054474	Thnsl2	BC051244|TSH2	threonine synthase-like 2 (bacterial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-115644546-3	chr3	115644067	115645067	+	905.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70488.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136551117-3	chr6	136550617	136551617	+	905.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	32266.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	4.5	2.0	3.5	2.5	20.5	7.5
Merged-chr9-45278280-3	chr9	45277846	45278846	+	905.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9197.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80774772-4	chr10	80774276	80775276	+	905.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199322, intron 7 of 27)	intron (NM_199322, intron 7 of 27)	19573.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132101014-4	chr2	132100512	132101512	+	905.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355431, intron 2 of 6)	RLTR19-int|LTR|ERVK	44096.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125553350-8	chr7	125552851	125553851	+	905.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008700, intron 1 of 10)	intron (NM_001008700, intron 1 of 10)	1069.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	3.0	34.5	13.5	0.0	5.0	5.0
Merged-chr4-3677376-4	chr4	3676910	3677910	+	905.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010747)	promoter-TSS (NM_010747)	-711.0	NM_001111096	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	8.0	51.0	41.5	16.5	45.5	31.0
Merged-chr17-83703827-2	chr17	83703327	83704327	+	905.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	-2336.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-37029521-2	chr17	37029016	37030016	+	905.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6118.0	NM_010814	17441.0	Mm.210857	NM_010814	ENSMUSG00000076439	Mog	B230317G11Rik	myelin oligodendrocyte glycoprotein	protein-coding	2.0	3.0	3.0	2.0	3.0	3.0
Merged-chr19-17277110-2	chr19	17276576	17277576	+	905.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	62429.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	123.0	222.5	251.5	11.5	1.0	7.0
Merged-chr11-77028256-2	chr11	77027756	77028756	+	905.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010484, intron 13 of 13)	intron (NM_010484, intron 13 of 13)	29659.0	NM_010484	15567.0	Mm.300318	NM_010484	ENSMUSG00000020838	Slc6a4	5-HTT|AI323329|Htt|Sert	solute carrier family 6 (neurotransmitter transporter, serotonin), member 4	protein-coding	0.0	3.0	4.0	0.0	0.0	0.0
Merged-chr16-10975605-2	chr16	10975105	10976105	+	905.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	17516.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-80312214-2	chr4	80311714	80312714	+	905.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-521999.0	NM_031202	22178.0	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding	0.5	0.0	1.0	0.0	0.0	0.0
Merged-chr2-58324743-2	chr2	58324243	58325243	+	905.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033369)	promoter-TSS (NM_001033369)	64.0	NM_001033369	269275.0	Mm.77751	NM_001033369	ENSMUSG00000026834	Acvr1c	ACTR-IC|ACVRLK7|ALK7|Alk-7|C230097P10	activin A receptor, type IC	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110653457-2	chr9	110652957	110653957	+	905.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183276, intron 1 of 53)	intron (NM_183276, intron 1 of 53)	704.0	NM_183276	235627.0	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding	0.5	3.5	1.0	0.0	7.0	3.5
Merged-chr12-100114155-2	chr12	100113655	100114655	+	905.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008947, intron 2 of 9)	RSINE1|SINE|B4	1824.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32611585-4	chr5	32611085	32612085	+	905.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009535, exon 1 of 12)	5' UTR (NM_009535, exon 1 of 12)	414.0	NM_009535	22612.0	Mm.4558	NM_009535	ENSMUSG00000014932	Yes1	Yes|p61-Yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding	7.5	0.0	2.5	0.0	0.5	2.5
Merged-chr13-111793702-2	chr13	111793202	111794202	+	905.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	15291.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	8.0	8.5	3.5	5.5	1.5	3.0
Merged-chr15-74720114-2	chr15	74719614	74720614	+	905.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1120.0	NM_198607	223626.0	Mm.268603	NM_198607	ENSMUSG00000056665	Them6	4930572J05Rik	thioesterase superfamily member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105901163-2	chr8	105900663	105901663	+	905.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173432, intron 1 of 2)	intron (NM_173432, intron 1 of 2)	689.0	NM_173432	244631.0	Mm.27627	NM_173432	ENSMUSG00000048310	Pskh1	AW539964|E130013P03Rik|b2b1230Clo	protein serine kinase H1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104321956-3	chr8	104321438	104322438	+	905.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028524)	promoter-TSS (NM_028524)	-289.0	NM_028524	75502.0	Mm.232593	NM_028524	ENSMUSG00000035785	Cmtm2b	1700013O04Rik|Cklfsf22|Cklfsf2b	CKLF-like MARVEL transmembrane domain containing 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-87857811-2	chr10	87857311	87858311	+	905.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001314010)	promoter-TSS (NM_001314010)	-454.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125542766-4	chr7	125542268	125543268	+	905.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9514.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	2.5	15.0	3.5	7.5	0.5	13.0
Merged-chr11-87594413-2	chr11	87593913	87594913	+	905.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133215, intron 2 of 18)	intron (NM_133215, intron 2 of 18)	2247.0	NM_133215	170749.0	Mm.399376	NM_133215	ENSMUSG00000018401	Mtmr4	AA596759|ESTM44|FYVE-DSP2|ZFYVE11|mKIAA0647	myotubularin related protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56069694-2	chr17	56069194	56070194	+	905.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_024432, exon 8 of 12)	exon (NM_024432, exon 8 of 12)	9639.0	NM_024432	66530.0	Mm.28000	NM_024432	ENSMUSG00000019578	Ubxn6	1200008L11Rik|2210415J11Rik|AU040909|Ubxd1|Ubxdc2	UBX domain protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30733086-4	chr16	30732563	30733563	+	905.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	133340.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	2.5	8.5	3.5	1.0	2.5	4.5
Merged-chr19-41340454-2	chr19	41339954	41340954	+	905.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	(CAAT)n|Simple_repeat|Simple_repeat	44616.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116139633-2	chr11	116139133	116140133	+	905.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024177)	promoter-TSS (NM_024177)	-765.0	NM_024177	60441.0	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70710907-2	chr8	70710407	70711407	+	905.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7636.0	NM_001195253	100502950.0	Mm.52981	NM_001195253	ENSMUSG00000095026	Gm3336	100041434|2410018E23Rik	predicted gene 3336	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70171285-2	chr14	70170785	70171785	+	905.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001253736, exon 6 of 10)	exon (NM_001253736, exon 6 of 10)	5530.0	NM_001253736	213019.0	Mm.283968	NM_145978	ENSMUSG00000022090	Pdlim2	4732462F18Rik|Slim	PDZ and LIM domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-24530344-4	chr6	24529819	24530819	+	905.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080847, intron 1 of 9)	intron (NM_080847, intron 1 of 9)	2175.0	NM_080847	78910.0	Mm.160150	NM_080847	ENSMUSG00000029685	Asb15	4930400E23Rik|Asb-15	ankyrin repeat and SOCS box-containing 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155373455-4	chr2	155372945	155373945	+	905.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	-8411.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	6.0	6.5	14.0	3.5	13.5	1.0
Merged-chr4-9604884-2	chr4	9604384	9605384	+	905.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177854, intron 3 of 11)	intron (NM_001177854, intron 3 of 11)	38833.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	9.5	21.0	16.5	6.5	4.0	1.5
Merged-chr2-26475706-2	chr2	26475206	26476206	+	905.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 15 of 33)	intron (NM_008714, intron 15 of 33)	-5587.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76780327-4	chr11	76779839	76780839	+	905.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007754, exon 21 of 21)	3' UTR (NM_007754, exon 21 of 21)	-16761.0	NM_001356321	53334.0	Mm.20931	NM_016810	ENSMUSG00000010392	Gosr1	AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28	golgi SNAP receptor complex member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6371511-4	chr4	6371107	6372107	+	905.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	URR1A|DNA|hAT-Charlie	5927.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	41.0	41.5	45.0	33.0	76.0	56.5
Merged-chr3-65351772-4	chr3	65351263	65352263	+	905.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357358, intron 8 of 13)	intron (NM_001357358, intron 8 of 13)	-2334.0	NR_040390	319798.0	Mm.445698	NR_040390		A730090N16Rik	-	RIKEN cDNA A730090N16 gene	ncRNA	7.0	2.0	4.5	2.0	0.0	0.0
Merged-chr8-128610914-4	chr8	128610419	128611419	+	905.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74735.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0.0	1.0	1.5	0.0	0.0	1.0
Merged-chr6-90428540-4	chr6	90428121	90429121	+	905.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173775)	promoter-TSS (NM_173775)	-141.0	NM_173775	243538.0	Mm.386876	NM_173775	ENSMUSG00000048794	Cfap100	AW048498|C030041G11Rik|C230069K22Rik|Ccdc37	cilia and flagella associated protein 100	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-44432986-4	chr17	44432457	44433457	+	905.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	244385.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84968758-4	chr8	84968255	84969255	+	905.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011563)	promoter-TSS (NM_011563)	-867.0	NM_001317385	21672.0	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	36.0	93.0	41.5	21.0	69.0	37.0
Merged-chr19-28454815-3	chr19	28454314	28455314	+	905.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175459, intron 4 of 10)	intron (NM_175459, intron 4 of 10)	-223410.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11957550-3	chr19	11957038	11958038	+	905.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8306.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	25.5	51.0	45.5	0.0	0.0	4.5
Merged-chr9-78553165-3	chr9	78552648	78553648	+	905.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172773, intron 8 of 10)	intron (NM_172773, intron 8 of 10)	34897.0	NM_172773	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-5180338-3	chr5	5179836	5180836	+	905.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 5 of 14)	intron (NM_011074, intron 5 of 14)	85732.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	8.0	22.0	9.0	18.0	3.5	7.5
Merged-chr15-95962626-3	chr15	95962120	95963120	+	905.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 17 of 19)	intron (NM_175344, intron 17 of 19)	116933.0	NR_126493	402773.0	Mm.210567	NM_001033483	ENSMUSG00000078925	D030018L15Rik	-	nuclear receptor coactivator 2 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-3224624-4	chr17	3224128	3225128	+	905.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101945.0	NM_001122998	24001.0	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	0.0	1.5	0.0	1.5	0.0	0.0
Merged-chr12-32656267-4	chr12	32655765	32656765	+	905.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-164070.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70038278-4	chr11	70037768	70038768	+	905.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007864, intron 8 of 19)	intron (NM_007864, intron 8 of 19)	-15856.0	NM_001291131	11889.0	Mm.6559	NM_009714	ENSMUSG00000020884	Asgr1	ASGPR1|Asgr|Asgr-1|HL-1	asialoglycoprotein receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43668334-4	chr7	43667811	43668811	+	905.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR33|LTR|ERVK	-3720.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110236318-4	chr7	110235829	110236829	+	905.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009302, intron 1 of 11)	intron (NM_009302, intron 1 of 11)	14626.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37029969-4	chr1	37029467	37030467	+	905.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90440.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58593363-4	chr13	58592879	58593879	+	905.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022317, intron 1 of 17)	MER67A|LTR|ERV1	17498.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	1.5	0.0	1.0	0.0	0.0	0.5
Merged-chr7-35335143-6	chr7	35334589	35335589	+	905.4055789999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027897, intron 1 of 14)	CpG	852.0	NM_027897	52428.0	Mm.286600	NM_027897	ENSMUSG00000030494	Rhpn2	1300002E07Rik|AA536890|C85860|D7Ertd784e	rhophilin, Rho GTPase binding protein 2	protein-coding	1.0	8.5	4.5	0.5	5.5	6.0
Merged-chr1-39576026-5	chr1	39575536	39576536	+	905.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033135, intron 1 of 6)	intron (NM_001033135, intron 1 of 6)	1311.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80161888-6	chr10	80161415	80162415	+	905.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-5924.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118487171-3	chr7	118486707	118487707	+	905.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033380, exon 1 of 1)	3' UTR (NM_001033380, exon 1 of 1)	4768.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	53.5	172.5	119.0	59.0	157.5	155.5
Merged-chr7-110268164-3	chr7	110267679	110268679	+	905.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009302, intron 6 of 11)	intron (NM_009302, intron 6 of 11)	46476.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34195531-2	chr19	34195031	34196031	+	905.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360718, intron 1 of 10)	URR1A|DNA|hAT-Charlie	2597.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	8.0	23.0	20.5	15.5	8.0	25.0
Merged-chr2-60809618-4	chr2	60809147	60810147	+	905.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	71791.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4162838-2	chr8	4162321	4163321	+	905.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3746.0	NM_001039578	213027.0	Mm.437106	NM_153536	ENSMUSG00000011832	Evi5l	1700084G18Rik|2310039H16Rik|3110007G05Rik|B130050I23Rik	ecotropic viral integration site 5 like	protein-coding	1.5	9.0	5.0	0.0	0.0	1.5
Merged-chr1-177141660-4	chr1	177141157	177142157	+	905.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011785, intron 1 of 12)	intron (NM_011785, intron 1 of 12)	107110.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27772216-4	chr2	27771871	27772871	+	905.371216	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3b|LINE|CR1	61788.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72107149-4	chr6	72106650	72107650	+	905.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	9542.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46341007-4	chr8	46340454	46341454	+	905.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46283.0	NM_173789	234219.0	Mm.145631	NM_173789	ENSMUSG00000047171	Helt	A830086M02|Hesl|Heslike|Mgn|megane	helt bHLH transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112800631-4	chr12	112800105	112801105	+	905.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8370.0	NM_145450	217887.0	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Clba1|Flj20080	cDNA sequence BC022687	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107803972-4	chr4	107803498	107804498	+	905.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080926, intron 2 of 18)	intron (NM_001080926, intron 2 of 18)	1739.0	NM_001080926	16975.0	Mm.442134	NM_053073	ENSMUSG00000028613	Lrp8	4932703M08Rik|AA921429|AI848122|ApoER2|Lr8b	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr4-139043798-4	chr4	139043288	139044288	+	905.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029857, intron 14 of 16)	L1MEd|LINE|L1	31001.0	NM_021358	15565.0	Mm.291096	NM_021358	ENSMUSG00000028747	Htr6	5-HT6	5-hydroxytryptamine (serotonin) receptor 6	protein-coding	13.0	14.0	16.5	12.5	30.5	14.5
Merged-chr5-121201979-2	chr5	121201479	121202479	+	905.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2522.0	NM_011290	19988.0	Mm.262021	NM_011290	ENSMUSG00000029614	Rpl6	Taxreb107	ribosomal protein L6	protein-coding	0.5	0.0	0.0	0.0	0.0	0.5
Merged-chr9-89704507-3	chr9	89704019	89705019	+	905.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025360, intron 1 of 2)	intron (NM_025360, intron 1 of 2)	524.0	NM_025360	66111.0	Mm.27606	NM_025360	ENSMUSG00000032353	Tmed3	1200002G13Rik|AW546672|P24b	transmembrane p24 trafficking protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4988262-3	chr11	4987763	4988763	+	905.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243044, intron 1 of 21)	intron (NM_001243044, intron 1 of 21)	1439.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118504558-3	chr14	118504065	118505065	+	905.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163676, intron 26 of 29)	intron (NM_001163676, intron 26 of 29)	87907.0	NR_105815	102465208.0		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118995271-4	chr7	118994803	118995803	+	905.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195774)	promoter-TSS (NM_001195774)	-92.0	NM_001195774	64297.0	Mm.103439	NM_022420	ENSMUSG00000008734	Gprc5b	AW125761|Raig2	G protein-coupled receptor, family C, group 5, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-33072259-3	chr13	33071756	33072756	+	905.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11847.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	3.0	6.0	0.0	3.0	8.0	0.0
Merged-chr9-109876115-6	chr9	109875642	109876642	+	905.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007658, exon 1 of 15)	exon (NM_007658, exon 1 of 15)	563.0	NM_007658	12530.0	Mm.307103	NM_007658	ENSMUSG00000032477	Cdc25a	D9Ertd393e	cell division cycle 25A	protein-coding	51.5	85.0	79.5	29.5	103.5	94.0
Merged-chr11-79622859-3	chr11	79622337	79623337	+	905.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175543, intron 3 of 14)	intron (NM_175543, intron 3 of 14)	326.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-26641445-3	chr14	26640977	26641977	+	905.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007479, intron 1 of 5)	intron (NM_007479, intron 1 of 5)	3343.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-3282473-3	chr18	3281975	3282975	+	905.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110855)	promoter-TSS (NM_001110855)	-728.0	NM_001110855	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66896263-3	chr9	66895762	66896762	+	905.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	23443.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-105408233-3	chr9	105407748	105408748	+	905.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	7460.0	NM_001164828	66595.0	Mm.84941	NM_025651	ENSMUSG00000032567	Aste1	1100001A21Rik|AV006403	asteroid homolog 1	protein-coding	11.0	25.5	19.5	9.0	1.5	8.5
Merged-chr11-55005161-4	chr11	55004684	55005684	+	905.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001110211, exon 9 of 25)	exon (NM_001110211, exon 9 of 25)	28287.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3425108-3	chr2	3424610	3425610	+	905.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302684, intron 1 of 14)	intron (NM_001302684, intron 1 of 14)	979.0	NM_001302684	227525.0	Mm.23483	NM_146114	ENSMUSG00000026648	Dclre1c	9930121L06Rik|AI661365|Art|Snm1l	DNA cross-link repair 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84169096-4	chr3	84168611	84169611	+	905.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271728, intron 10 of 11)	intron (NM_001271728, intron 10 of 11)	-5527.0	NR_036654	624713.0	Mm.442604	NR_036654		Gm6525	EG624713	ribosomal protein L36a pseudogene	pseudo	1.5	0.0	2.0	0.0	1.0	1.5
Merged-chr5-113015303-6	chr5	113014879	113015879	+	905.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177078, exon 1 of 21)	exon (NM_177078, exon 1 of 21)	159.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25608284-3	chr14	25607790	25608790	+	905.3110960000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 6 of 23)	intron (NM_183208, intron 6 of 23)	4777.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88247044-4	chr1	88246571	88247571	+	905.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 24 of 41)	intron (NM_001281466, intron 24 of 41)	20051.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119977914-4	chr9	119977417	119978417	+	905.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153287, intron 1 of 4)	intron (NM_153287, intron 1 of 4)	5106.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139398562-4	chr5	139398056	139399056	+	905.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	-7831.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	29.0	82.5	57.5	28.0	83.0	61.5
Merged-chr2-32450504-4	chr2	32449997	32450997	+	905.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194335)	promoter-TSS (NM_194335)	40.0	NM_194335	71254.0	Mm.102341	NM_194335	ENSMUSG00000039164	Naif1	2310007O20Rik|4933440H19Rik	nuclear apoptosis inducing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-113478648-3	chr2	113478150	113479150	+	905.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 2 of 16)	intron (NM_001285459, intron 2 of 16)	37586.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	9.0	8.5	8.5	15.0	11.5	26.5
Merged-chr2-131085940-7	chr2	131085403	131086403	+	905.264282	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011426, intron 1 of 20)	intron (NM_011426, intron 1 of 20)	862.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	38.0	38.0	58.0	53.0	102.5	92.5
Merged-chr17-71262320-2	chr17	71261813	71262813	+	905.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357338, intron 4 of 7)	RSINE1|SINE|B4	48698.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	23.0	17.5	2.0	0.0	20.0	5.5
Merged-chr7-45535497-2	chr7	45534997	45535997	+	905.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_148927, intron 6 of 19)	B3A|SINE|B2	9167.0	NM_148927	69217.0	Mm.274158	NM_148927	ENSMUSG00000040428	Plekha4	2410005C22Rik|C88169|Pepp1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding	0.0	34.0	6.0	3.0	9.0	3.5
Merged-chr2-143992266-2	chr2	143991766	143992766	+	905.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	18997.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-16303450-4	chr16	16302971	16303971	+	905.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_038046, exon 1 of 5)	non-coding (NR_038046, exon 1 of 5)	506.0	NM_198246	70120.0	Mm.37486	NM_198246	ENSMUSG00000022792	Yars2	2210023C10Rik|tyrRS	tyrosyl-tRNA synthetase 2 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55055532-4	chr1	55055077	55056077	+	905.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026424, intron 1 of 3)	intron (NM_026424, intron 1 of 3)	2807.0	NM_001039710	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	30.0	15.0	41.0	0.0	20.0	5.0
Merged-chr7-45127641-2	chr7	45127183	45128183	+	905.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_001277)	promoter-TSS (NR_001277)	-220.0	NR_000002	27209.0		NR_000002	ENSMUSG00000065219	Snord32a	Rnu32|Rnu32a|U32|U32A	small nucleolar RNA, C/D box 32A	snoRNA	0.0	12.0	14.0	3.5	30.5	12.5
Merged-chr2-119163339-4	chr2	119162834	119163834	+	905.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4454.0	NM_177157	320415.0	Mm.86373	NM_177157	ENSMUSG00000046814	Gchfr	2010323F13Rik|GFRP|P35	GTP cyclohydrolase I feedback regulator	protein-coding	15.5	8.5	8.5	26.0	32.5	49.0
Merged-chr2-129316977-2	chr2	129316477	129317477	+	905.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-7005.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-56952090-2	chr9	56951590	56952590	+	905.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_178374, intron 1 of 8)	B2_Mm2|SINE|B2	1166.0	NM_178374	66069.0	Mm.220984	NM_178374	ENSMUSG00000055334	Snupn	0610031A09Rik|Rnut1|Snupn1	snurportin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51652440-4	chr3	51651935	51652935	+	905.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8744.0	NM_174995	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90285359-4	chr16	90284839	90285839	+	905.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178923)	promoter-TSS (NM_178923)	-836.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-71867676-3	chr12	71867198	71868198	+	905.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026102, intron 1 of 25)	MTD|LTR|ERVL-MaLR	-21845.0	NM_001286452	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	0.0	3.0	4.5	1.5	0.0	1.0
Merged-chr8-41292213-4	chr8	41291712	41292712	+	905.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023662, intron 21 of 37)	intron (NM_023662, intron 21 of 37)	52453.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	5.0	11.0	5.0	0.0	8.0	2.5
Merged-chr7-16845452-5	chr7	16844893	16845893	+	905.23999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178900, intron 1 of 17)	intron (NM_178900, intron 1 of 17)	2328.0	NM_178900	101540.0	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	3.5	5.5	1.5	0.0	7.5	8.0
Merged-chr3-10292784-4	chr3	10292316	10293316	+	905.2374880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029310, intron 1 of 5)	intron (NM_029310, intron 1 of 5)	8367.0	NM_001357159	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-100422628-3	chr3	100422123	100423123	+	905.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3782.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135719663-3	chr1	135719160	135720160	+	905.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360782)	promoter-TSS (NM_001360782)	-403.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120624485-3	chr11	120623976	120624976	+	905.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_105901)	TTS (NR_105901)	400.0	NR_105901	102465565.0		NR_105901	ENSMUSG00000098282	Mir6936	Gm27574|mmu-mir-6936	microRNA 6936	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161885896-3	chr1	161885405	161886405	+	905.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9223.0	NM_001357402	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	3.0	8.0	2.0	8.5	12.0	3.0
Merged-chr11-23597501-3	chr11	23597005	23598005	+	905.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027860, intron 12 of 21)	intron (NM_027860, intron 12 of 21)	36126.0	NM_001347242	71675.0	Mm.48031	NM_027860	ENSMUSG00000042208	0610010F05Rik	Kiaa1841|mKIAA1841	RIKEN cDNA 0610010F05 gene	protein-coding	1.0	2.0	0.0	0.0	0.0	0.0
Merged-chr19-16349505-4	chr19	16349018	16350018	+	905.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 5 of 6)	L1MB3|LINE|L1	-34514.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32279673-3	chr19	32279159	32280159	+	905.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168525, intron 2 of 9)	intron (NM_001168525, intron 2 of 9)	-68646.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133805303-5	chr4	133804818	133805818	+	905.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC4a|LINE|L1	-51707.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	129.5	349.5	213.0	124.5	372.5	256.0
Merged-chr13-40953001-4	chr13	40952506	40953506	+	905.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133219, intron 1 of 2)	intron (NM_133219, intron 1 of 2)	35372.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107335092-5	chr11	107334506	107335506	+	905.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	B2_Mm2|SINE|B2	135714.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32404868-4	chr2	32404380	32405380	+	905.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8990.0	NM_133783	96979.0	Mm.28048	NM_133783	ENSMUSG00000026820	Ptges2	0610038H10Rik|C79137|Gbf1|Mpges2|Pges2	prostaglandin E synthase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100868737-4	chr7	100868240	100869240	+	905.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5327.0	NM_177073	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30532219-4	chr16	30531709	30532709	+	905.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357415, intron 9 of 11)	intron (NM_001357415, intron 9 of 11)	18369.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	0.0	2.0	0.0	0.0	0.0	6.0
Merged-chr17-64873813-3	chr17	64873257	64874257	+	905.18335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37686.0	NM_030031	78057.0	Mm.109380	NM_030031	ENSMUSG00000024088	4930583I09Rik	-	RIKEN cDNA 4930583I09 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60817492-4	chr2	60816994	60817994	+	905.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	63944.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20694389-3	chr14	20693870	20694870	+	905.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028428)	promoter-TSS (NM_028428)	-598.0	NM_028428	73068.0	Mm.277552	NM_028428	ENSMUSG00000039357	Fut11	3110009G03Rik|AI317183	fucosyltransferase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103957090-2	chr11	103956590	103957590	+	905.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-3034.0	NM_008740	18195.0	Mm.260117	NM_008740	ENSMUSG00000034187	Nsf	AI316878|AU020090|AU067812|SKD2	N-ethylmaleimide sensitive fusion protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-37685358-3	chr16	37684880	37685880	+	905.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31012.0	NM_026610	68194.0	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29054036-7	chr2	29053541	29054541	+	905.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166705, intron 1 of 5)	intron (NM_001166705, intron 1 of 5)	1025.0	NM_001166705	329375.0	Mm.425079	NM_001085514	ENSMUSG00000079502	Cfap77	1700101E01Rik|Gm823	cilia and flagella associated protein 77	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-144897293-2	chr4	144896793	144897793	+	905.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	4156.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34108917-3	chr2	34108435	34109435	+	905.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1200.0	NR_130173	329387.0	Mm.125817	NR_130173	ENSMUSG00000087461	C230014O12Rik	-	RIKEN cDNA C230014O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-107095869-3	chr8	107095414	107096414	+	905.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_106043)	TTS (NR_106043)	192.0	NR_106043	102465652.0		NR_106043	ENSMUSG00000098671	Mir7075	Gm27821|mmu-mir-7075	microRNA 7075	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-38043558-3	chr19	38043055	38044055	+	905.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001099634)	promoter-TSS (NM_001099634)	22.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	24.0	68.5	57.0	60.5	81.0	46.5
Merged-chr14-61789213-4	chr14	61788697	61789697	+	905.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106824.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.0	8.0	7.5	0.0	2.5	1.5
Merged-chr10-13866926-4	chr10	13866381	13867381	+	905.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025446, intron 1 of 5)	intron (NM_025446, intron 1 of 5)	2076.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	3.5	3.5	6.5	2.0	4.0	11.5
Merged-chr8-69904345-2	chr8	69903819	69904819	+	905.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_032004)	TTS (NM_032004)	-1761.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	0.0	5.0	3.0	0.0	0.0	1.0
Merged-chr17-64821092-4	chr17	64820665	64821665	+	905.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14906.0	NM_030031	78057.0	Mm.109380	NM_030031	ENSMUSG00000024088	4930583I09Rik	-	RIKEN cDNA 4930583I09 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97998522-2	chr3	97998022	97999022	+	905.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15016.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-177703610-4	chr1	177703116	177704116	+	905.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26198.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29414778-4	chr17	29414277	29415277	+	905.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD3|LINE|L1	53863.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr19-36083103-4	chr19	36082597	36083597	+	905.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019428)	promoter-TSS (NM_019428)	-619.0	NM_019428	54364.0	Mm.277891	NM_019428	ENSMUSG00000024800	Rpp30	Rnasep2|TSG15	ribonuclease P/MRP 30 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5582399-4	chr17	5581879	5582879	+	905.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	89779.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149729005-4	chr4	149728515	149729515	+	905.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284270, intron 4 of 10)	intron (NM_001284270, intron 4 of 10)	8755.0	NM_001284273	230917.0	Mm.266704	NM_177672	ENSMUSG00000044700	Tmem201	AV028368|D4Ertd429e|Net5|Samp1	transmembrane protein 201	protein-coding	2.0	27.5	10.0	16.0	23.0	20.5
Merged-chr14-25745966-4	chr14	25745417	25746417	+	905.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 2 of 3)	intron (NM_001101433, intron 2 of 3)	22939.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107917790-4	chr13	107917279	107918279	+	905.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27715.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.0	9.5	4.0	0.0	2.5	0.0
Merged-chr18-4924200-3	chr18	4923703	4924703	+	905.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111717.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-19563310-3	chr8	19562830	19563830	+	905.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68233.0	NM_139220	246080.0	Mm.207067	NM_139220	ENSMUSG00000037790	Defb7	BD-7|Defb15	defensin beta 7	protein-coding	0.0	0.5	1.0	1.5	16.0	4.0
Merged-chr13-54818968-4	chr13	54818447	54819447	+	905.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29542.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	2.5	10.5	5.5	1.0	9.0	4.5
Merged-chr11-20762251-4	chr11	20761775	20762775	+	905.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F3|LINE|L1	-20719.0	NM_181411	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	0.0	0.0	5.0	1.5	1.0	0.0
Merged-chr1-7394265-4	chr1	7393777	7394777	+	905.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	305357.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91441656-4	chr16	91441150	91442150	+	905.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-23454.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83571287-4	chr7	83570793	83571793	+	905.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13638.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	0.5	0.0	1.0	2.0	3.0	4.5
Merged-chr7-80230589-6	chr7	80230117	80231117	+	905.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291275, intron 2 of 6)	intron (NM_001291275, intron 2 of 6)	2188.0	NM_001291276	23991.0	Mm.30217	NM_011870	ENSMUSG00000030538	Cib1	Cibkip|Kip|Prkdcip	calcium and integrin binding 1 (calmyrin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35495573-4	chr18	35495093	35496093	+	905.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030749, intron 1 of 9)	intron (NM_030749, intron 1 of 9)	3332.0	NM_030749	81500.0	Mm.291482	NM_030749	ENSMUSG00000024357	Sil1	1810057E01Rik|AI042831|wz	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32758264-5	chr19	32757801	32758801	+	905.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008960, exon 1 of 9)	5' UTR (NM_008960, exon 1 of 9)	724.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	19.0	50.0	28.0	18.5	36.0	35.0
Merged-chr3-149219962-4	chr3	149219448	149220448	+	905.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54789.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.0	1.5	6.5	17.0	8.0	9.5
Merged-chr3-100916997-4	chr3	100916536	100917536	+	905.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5457.0	NM_001165952	229644.0	Mm.189351	NM_194343	ENSMUSG00000033233	Trim45	4921530N01Rik	tripartite motif-containing 45	protein-coding	1.0	12.0	8.0	0.0	13.0	8.0
Merged-chr18-5760478-3	chr18	5759958	5760958	+	905.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360982, intron 4 of 7)	intron (NM_001360982, intron 4 of 7)	167811.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	0.0	0.0	0.0	1.0	0.0	1.5
Merged-chr16-44032582-4	chr16	44032035	44033035	+	905.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359085, intron 2 of 16)	MTE2a|LTR|ERVL-MaLR	-4590.0	NM_001172107	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46830148-4	chr17	46829633	46830633	+	905.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001100452, intron 1 of 10)	intron (NM_001100452, intron 1 of 10)	1280.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28707461-4	chr17	28706946	28707946	+	905.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	14878.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-148989463-14	chr3	148988842	148989842	+	905.031616	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-34707.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.0	0.0	0.5	3.5	2.5	0.0
Merged-chr6-134366854-4	chr6	134366349	134367349	+	905.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153848, intron 3 of 8)	intron (NR_153848, intron 3 of 8)	-29480.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	2.5	16.5	8.0	13.0	29.0	31.0
Merged-chr14-8216934-2	chr14	8216434	8217434	+	905.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305937, intron 1 of 2)	intron (NM_001305937, intron 1 of 2)	686.0	NM_001305937	71393.0	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128578351-3	chr10	128577828	128578828	+	905.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010153, intron 12 of 27)	intron (NM_010153, intron 12 of 27)	6169.0	NR_105882	102465553.0		NR_105882	ENSMUSG00000098592	Mir6917	Gm27633|mmu-mir-6917	microRNA 6917	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89965788-2	chr3	89965288	89966288	+	905.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2456.0	NM_001081182	54667.0	Mm.30455	NM_001081182	ENSMUSG00000060671	Atp8b2	Id	ATPase, class I, type 8B, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5858984-4	chr13	5858456	5859456	+	905.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045891)	promoter-TSS (NR_045891)	-864.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111537284-3	chr8	111536802	111537802	+	905.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001168621, exon 1 of 5)	exon (NM_001168621, exon 1 of 5)	662.0	NM_001168621	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	0.0	4.0	0.0	0.0	2.0	0.0
Merged-chr18-77825547-2	chr18	77825047	77826047	+	905.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 1 of 14)	intron (NM_013831, intron 1 of 14)	-29157.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98313749-2	chr13	98313249	98314249	+	905.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001170540, exon 3 of 6)	exon (NM_001170540, exon 3 of 6)	3218.0	NM_145455	218490.0	Mm.371688	NM_145455	ENSMUSG00000021660	Btf3	1700054E11Rik	basic transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70660532-4	chr8	70660047	70661047	+	905.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023217)	promoter-TSS (NM_023217)	-809.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	29.0	39.0	39.0	24.0	71.5	44.0
Merged-chr7-29768024-2	chr7	29767524	29768524	+	905.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023750)	promoter-TSS (NM_023750)	-528.0	NM_023750	74352.0	Mm.251083	NM_023750	ENSMUSG00000046185	Zfp84	2210410P13Rik|4633401C23Rik|AI415447|BB081605|C86188|KRAB18|Zfp69	zinc finger protein 84	protein-coding	64.0	131.0	78.0	43.5	124.5	73.5
Merged-chr15-58743680-2	chr15	58743180	58744180	+	905.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79747.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83663770-1	chr8	83663270	83664270	+	905.0	f1_balb.idr	intron (NM_018771, intron 5 of 6)	B3|SINE|B2	-2874.0	NM_013641	19216.0	Mm.213000	NM_013641	ENSMUSG00000019464	Ptger1	EP1|Ptgerep1	prostaglandin E receptor 1 (subtype EP1)	protein-coding	0.0	0.0	3.0	8.0	0.0	1.5
Merged-chr15-78331710-3	chr15	78331216	78332216	+	905.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358854, intron 2 of 14)	intron (NM_001358854, intron 2 of 14)	5726.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	0.0	5.0	6.5	0.0	2.5	3.5
Merged-chr11-74650918-2	chr11	74650418	74651418	+	905.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081158, intron 1 of 25)	intron (NM_001081158, intron 1 of 25)	1423.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54999584-1	chr13	54999084	55000084	+	905.0	f1_balb.idr	intron (NM_153131, intron 8 of 15)	intron (NM_153131, intron 8 of 15)	21235.0	NM_001206390	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	1.0	2.5	2.0	0.5	3.5	0.0
Merged-chr4-156218094-1	chr4	156217594	156218594	+	905.0	f1_c57bl6.idr	exon (NM_172417, exon 2 of 4)	exon (NM_172417, exon 2 of 4)	2167.0	NM_172417	74183.0	Mm.431343	NM_172417	ENSMUSG00000078486	Perm1	2310042D19Rik	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding	0.0	4.5	1.0	0.5	0.0	0.0
Merged-chr15-26609192-2	chr15	26608692	26609692	+	905.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176959, intron 2 of 3)	intron (NM_176959, intron 2 of 3)	286372.0	NM_176959	448987.0	Mm.253378	NM_176959	ENSMUSG00000043556	Fbxl7	AL023057|D230018M15Rik|FBL7|Fbl6	F-box and leucine-rich repeat protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44595467-2	chr10	44594967	44595967	+	905.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB1|LINE|L1	-136719.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-26600157-1	chr11	26599657	26600657	+	905.0	f1_balb.idr	Intergenic	Intergenic	-6237.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	9.0	18.5	28.0	5.0	14.0	11.5
Merged-chr7-101899603-2	chr7	101899103	101900103	+	905.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027532)	TTS (NM_027532)	3272.0	NM_001291349	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180484273-2	chr1	180483773	180484773	+	905.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081227)	promoter-TSS (NM_001081227)	-769.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113611066-2	chr13	113610572	113611572	+	905.0	f0_balb.idr|f0_c57.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	7492.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-80022505-2	chr2	80022005	80023005	+	905.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	16397.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-13272548-3	chr2	13272027	13273027	+	905.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1112.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47231835-1	chr19	47231335	47232335	+	905.0	f1_c57bl6.idr	intron (NM_001163480, intron 1 of 5)	intron (NM_001163480, intron 1 of 5)	2992.0	NM_001163480	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	0.0	4.0	0.0	0.0	0.0	0.0
Merged-chr10-93431066-3	chr10	93430562	93431562	+	905.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2045.0	NR_106161	102465791.0		NR_106161	ENSMUSG00000098679	Mir7688	Gm27874|mmu-mir-7688	microRNA 7688	ncRNA	0.0	4.0	1.5	0.0	4.5	1.5
Merged-chr12-35036340-4	chr12	35035830	35036830	+	905.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-10859.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	9.0	35.0	26.0	21.0	43.0	53.5
Merged-chr15-58585667-4	chr15	58585144	58586144	+	904.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	170176.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-133075798-4	chr3	133075295	133076295	+	904.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356309, intron 3 of 11)	B4A|SINE|B4	16030.0	NM_026231	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27651158-4	chr7	27650677	27651677	+	904.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2747.0	NM_028417	73032.0	Mm.44095	NM_028417	ENSMUSG00000007944	Ttc9b	2900074C18Rik	tetratricopeptide repeat domain 9B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr2-122619705-3	chr2	122619187	122620187	+	904.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8410.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	7.5	9.0	4.0	16.5	37.5	28.5
Merged-chr4-88720468-4	chr4	88719973	88720973	+	904.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172871, exon 1 of 1)	exon (NM_172871, exon 1 of 1)	2035.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101981228-4	chr11	101980770	101981770	+	904.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028207, intron 2 of 2)	B4A|SINE|B4	3521.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	16.5	61.0	63.5	19.5	29.0	16.0
Merged-chr7-44952201-4	chr7	44951691	44952691	+	904.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077591, intron 5 of 10)	intron (NM_001077591, intron 5 of 10)	8951.0	NM_011651	22116.0	Mm.84502	NM_011651	ENSMUSG00000059891	Tsks	Stk22s1|Tssks1	testis-specific serine kinase substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95869680-4	chr11	95869147	95870147	+	904.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008081, intron 7 of 10)	intron (NM_008081, intron 7 of 10)	10830.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	6.0	20.5	17.5	2.0	13.0	7.5
Merged-chr6-115343267-4	chr6	115342759	115343759	+	904.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17692.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-69145979-4	chr17	69145489	69146489	+	904.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355732, intron 1 of 21)	intron (NM_001355732, intron 1 of 21)	-10755.0	NM_013813	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	1.0	1.0	7.0	0.0	0.0	1.0
Merged-chr17-26942623-4	chr17	26942116	26943116	+	904.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281491, intron 1 of 18)	intron (NM_001281491, intron 1 of 18)	1164.0	NM_001281491	240057.0	Mm.328888	NM_001281491	ENSMUSG00000067629	Syngap1	Gm1963|Syngap	synaptic Ras GTPase activating protein 1 homolog (rat)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-49827625-4	chr18	49827108	49828108	+	904.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5389.0	NM_001081371	240283.0	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50163031-7	chr6	50162521	50163521	+	904.892883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361248, intron 5 of 13)	intron (NM_001361248, intron 5 of 13)	52161.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	9.5	45.0	16.5	9.5	45.0	16.5
Merged-chr1-181921698-3	chr1	181921199	181922199	+	904.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010135, exon 7 of 15)	exon (NM_010135, exon 7 of 15)	-79298.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78160964-3	chr10	78160460	78161460	+	904.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8808.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128435922-3	chr8	128435424	128436424	+	904.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358959, intron 6 of 16)	intron (NM_001358959, intron 6 of 16)	76683.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	28.0	53.5	35.5	11.5	33.5	15.5
Merged-chr9-57708573-4	chr9	57708080	57709080	+	904.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153799)	promoter-TSS (NM_153799)	11.0	NM_153799	353190.0	Mm.268104	NM_153799	ENSMUSG00000038957	Edc3	AA517853|Lsm16|Yjdc	enhancer of mRNA decapping 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-5188172-4	chr15	5187671	5188671	+	904.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355621, intron 2 of 5)	intron (NM_001355621, intron 2 of 5)	2611.0	NM_001355621	67515.0	Mm.254979	NM_026213	ENSMUSG00000022151	Ttc33	2410099M07Rik|2900001O04Rik|AI507072|AW538342|Osrf	tetratricopeptide repeat domain 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156860021-2	chr1	156859517	156860517	+	904.875	f0_balb.idr|f1_balb.idr	intron (NM_028333, intron 4 of 4)	intron (NM_028333, intron 4 of 4)	20994.0	NM_028333	72713.0	Mm.389206	NM_028333	ENSMUSG00000033544	Angptl1	2810039D03Rik|ANG3|ANGPT3|ANGY|ARP1	angiopoietin-like 1	protein-coding	43.5	88.5	48.0	34.0	103.0	82.0
Merged-chr5-64463822-4	chr5	64463333	64464333	+	904.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040681, intron 1 of 2)	MLT1C|LTR|ERVL-MaLR	4109.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	2.0	21.5	3.5	1.0	0.0	0.5
Merged-chr4-138207094-4	chr4	138206606	138207606	+	904.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172703)	TTS (NM_172703)	-9506.0	NM_001122896	15441.0	Mm.348429	NM_010470	ENSMUSG00000028759	Hp1bp3	Hp1bp74	heterochromatin protein 1, binding protein 3	protein-coding	12.0	17.0	11.5	15.0	33.0	31.5
Merged-chr9-89237322-4	chr9	89236832	89237832	+	904.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359993, intron 2 of 2)	intron (NM_001359993, intron 2 of 2)	25948.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8953210-4	chr19	8952724	8953724	+	904.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197993)	promoter-TSS (NM_197993)	-608.0	NM_197993	70044.0	Mm.165979	NM_197993	ENSMUSG00000071645	Tut1	2700038E08Rik|PAPD2|Rbm21|TUTase6|U6-TUTase|star-PAP	terminal uridylyl transferase 1, U6 snRNA-specific	protein-coding	33.0	69.5	45.5	26.0	58.0	64.5
Merged-chr8-3441848-3	chr8	3441345	3442345	+	904.8666380000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133962, intron 9 of 19)	intron (NM_133962, intron 9 of 19)	25803.0	NM_026951	69129.0	Mm.45279	NM_026951	ENSMUSG00000069633	Pex11g	1810022F11Rik|1810049N02Rik|Pex11c|Pex11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding	1.0	1.0	5.0	0.0	0.0	2.0
Merged-chr7-127386846-3	chr7	127386336	127387336	+	904.8666380000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030226, exon 1 of 3)	exon (NM_030226, exon 1 of 3)	330.0	NM_030226	78921.0	Mm.200950	NM_030226	ENSMUSG00000030823	9130019O22Rik	-	RIKEN cDNA 9130019O22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145089412-4	chr7	145088901	145089901	+	904.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	118718.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	0.0	17.0	14.0	6.5	1.0	8.5
Merged-chr10-25381324-4	chr10	25380821	25381821	+	904.841675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 1 of 16)	L1MC4|LINE|L1	21523.0	NM_001358751	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78120036-2	chr11	78119536	78120536	+	904.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_145430, intron 1 of 2)	intron (NM_145430, intron 1 of 2)	25363.0	NM_145430	216971.0	Mm.119387	NM_145430	ENSMUSG00000037750	Fam222b	9630020I17Rik	family with sequence similarity 222, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25357193-2	chr2	25356693	25357693	+	904.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031843)	promoter-TSS (NM_031843)	-861.0	NM_031843	83768.0	Mm.21440	NM_031843	ENSMUSG00000026958	Dpp7	DPPII|Dpp2|QPP	dipeptidylpeptidase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98505759-2	chr15	98505259	98506259	+	904.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8285.0	NM_001001807	258502.0	Mm.377539	NM_001001807	ENSMUSG00000054036	Olfr279	MOR122-1|Olfr234|Olfr234-ps1|Olfr279-ps1	olfactory receptor 279	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-33389047-3	chr12	33388582	33389582	+	904.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131031, intron 1 of 3)	intron (NR_131031, intron 1 of 3)	5678.0	NR_131031	75836.0	Mm.410807	NR_131031	ENSMUSG00000085664	Atxn7l1os2	4930556N08Rik	ataxin 7-like 1, opposite strand 2	ncRNA	0.0	2.0	2.5	0.5	3.5	2.5
Merged-chr16-33885102-4	chr16	33884588	33885588	+	904.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010580, exon 5 of 15)	exon (NM_010580, exon 5 of 15)	55423.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27744543-3	chr2	27743970	27744970	+	904.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 4 of 9)	intron (NM_001290481, intron 4 of 9)	33887.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58145859-3	chr15	58145383	58146383	+	904.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029734, intron 1 of 5)	PB1D9|SINE|Alu	4517.0	NM_001326599	76773.0	Mm.26771	NM_029734	ENSMUSG00000022359	Wdyhv1	2410187C16Rik|AU014961|AW550036|Ntaq1	WDYHV motif containing 1	protein-coding	30.0	26.0	11.5	7.5	21.0	22.0
Merged-chr18-65583918-4	chr18	65583392	65584392	+	904.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361051, intron 1 of 8)	intron (NM_001361051, intron 1 of 8)	691.0	NM_001361051	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	2.0	3.0	8.5	10.0	4.0	5.0
Merged-chr11-115067648-2	chr11	115067148	115068148	+	904.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5609.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115033727-4	chr6	115033210	115034210	+	904.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026894, intron 2 of 7)	intron (NM_026894, intron 2 of 7)	4164.0	NM_026894	68971.0	Mm.24937	NM_026894	ENSMUSG00000030316	Tamm41	1500001M20Rik|TAM41	TAM41 mitochondrial translocator assembly and maintenance homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16928487-4	chr7	16927983	16928983	+	904.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4451.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46153820-4	chr18	46153315	46154315	+	904.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	45003.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	0.5	0.0	0.0	0.0	1.5	0.0
Merged-chr7-101884334-4	chr7	101883835	101884835	+	904.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291353, intron 1 of 5)	ORR1E|LTR|ERVL-MaLR	-1525.0	NM_001291352	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-65872738-4	chr15	65872227	65873227	+	904.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001356582, exon 23 of 23)	3' UTR (NM_001356582, exon 23 of 23)	39527.0	NM_001347038	18256.0	Mm.41776	NM_010953	ENSMUSG00000015001	Oc90	Ocn-95|PLA2L|Pla2ll|oc95	otoconin 90	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87187080-4	chr6	87186594	87187594	+	904.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054041, intron 16 of 17)	intron (NM_054041, intron 16 of 17)	82348.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	0.0	3.5	4.0	0.0	1.5	3.0
Merged-chr15-41831557-3	chr15	41831037	41832037	+	904.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130164, intron 1 of 5)	intron (NM_001130164, intron 1 of 5)	579.0	NM_001130164	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70743536-3	chr8	70743012	70744012	+	904.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201607, intron 3 of 16)	CpG	-11167.0	NM_001328047	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	8.0	1.0	0.0	0.0	0.0	1.0
Merged-chr18-62972947-4	chr18	62972442	62973442	+	904.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4974.0	NM_028017	108123.0	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88494107-4	chr3	88493607	88494607	+	904.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019390)	promoter-TSS (NM_019390)	-795.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122419978-4	chr3	122419499	122420499	+	904.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013867, exon 1 of 12)	5' UTR (NM_013867, exon 1 of 12)	242.0	NM_013867	29815.0	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	3.0	4.5	0.5	1.0	1.5	8.5
Merged-chr11-114911389-2	chr11	114910889	114911889	+	904.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21348.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7485335-4	chr19	7484804	7485804	+	904.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2013.0	NM_001003934	20168.0	Mm.246990	NM_053076	ENSMUSG00000024758	Rtn3	RTN3-A1	reticulon 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32768233-4	chr4	32767709	32768709	+	904.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081392, intron 96 of 101)	(TG)n|Simple_repeat|Simple_repeat	-32050.0	NM_175364	108755.0	Mm.1182	NM_175364	ENSMUSG00000045854	Lyrm2	2610208E05Rik	LYR motif containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80705716-2	chr10	80705216	80706216	+	904.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027829)	TTS (NM_027829)	3023.0	NM_027829	71564.0	Mm.35802	NM_027829	ENSMUSG00000055862	Izumo4	9030607L17Rik|AI550407	IZUMO family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-166146862-4	chr1	166146367	166147367	+	904.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021610, intron 2 of 6)	intron (NM_021610, intron 2 of 6)	16646.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86816393-2	chr11	86815893	86816893	+	904.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR6_Mm|LTR|ERV1	-8733.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21785941-4	chr19	21785445	21786445	+	904.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031997, intron 2 of 24)	intron (NM_031997, intron 2 of 24)	7605.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-78699251-3	chr14	78698747	78699747	+	904.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081336, intron 2 of 29)	intron (NM_001081336, intron 2 of 29)	33482.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr4-46557191-3	chr4	46556762	46557762	+	904.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 2 of 11)	PB1D7|SINE|Alu	9178.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	15.0	28.0	29.5	70.0	110.0	84.0
Merged-chr9-14751947-8	chr9	14751450	14752450	+	904.7152710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010242, exon 1 of 1)	exon (NM_010242, exon 1 of 1)	172.0	NM_010242	14345.0	Mm.63450	NM_010242	ENSMUSG00000049307	Fut4	AI451562|CD15|FAL|FucT-IV|LeX|SSEA-1|Ssea1	fucosyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99139959-6	chr7	99139484	99140484	+	904.69165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 1 of 14)	intron (NM_178635, intron 1 of 14)	1160.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	18.0	59.0	42.5	44.5	44.0	31.5
Merged-chr8-115618338-8	chr8	115617830	115618830	+	904.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	88564.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-115980864-4	chr4	115980387	115981387	+	904.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37037.0	NM_010173	14073.0	Mm.256025	NM_010173	ENSMUSG00000034171	Faah	AW412498	fatty acid amide hydrolase	protein-coding	1.0	0.5	0.5	0.0	0.0	1.5
Merged-chr13-36557525-3	chr13	36557022	36558022	+	904.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	176955.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	0.0	0.0	4.0	1.5	18.0	0.5
Merged-chr2-35200329-3	chr2	35199820	35200820	+	904.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026697, intron 1 of 7)	CpG	800.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	6.5	31.0	22.0	11.5	43.0	25.0
Merged-chr17-84318685-3	chr17	84318166	84319166	+	904.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 28 of 37)	intron (NM_183021, intron 28 of 37)	-130719.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-35951245-3	chr1	35950747	35951747	+	904.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117153.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105900475-3	chr3	105899963	105900963	+	904.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-3958.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85081018-3	chr8	85080532	85081532	+	904.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026399)	promoter-TSS (NM_026399)	69.0	NM_001001493	414077.0	Mm.35790	NM_001001493	ENSMUSG00000059355	Wdr83os	-	WD repeat domain 83 opposite strand	protein-coding	19.5	55.0	27.0	52.5	61.0	53.0
Merged-chr5-76392663-2	chr5	76392163	76393163	+	904.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28886.0	NM_019515	56183.0	Mm.154879	NM_019515	ENSMUSG00000029236	Nmu	-	neuromedin U	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126655903-4	chr7	126655399	126656399	+	904.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029339, intron 1 of 9)	ORR1B1|LTR|ERVL-MaLR	6590.0	NM_029339	75565.0	Mm.45686	NM_029339	ENSMUSG00000030714	Sgf29	1700023O11Rik|9530025I05Rik|Ccdc101	SAGA complex associated factor 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17703888-3	chr16	17703382	17704382	+	904.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285886, intron 2 of 16)	intron (NM_001285886, intron 2 of 16)	19018.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-5210565-3	chr16	5210065	5211065	+	904.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5309.0	NR_105783	102465188.0		NR_105783	ENSMUSG00000098675	Mir6364	Gm27327|mmu-mir-6364	microRNA 6364	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147911907-4	chr5	147911411	147912411	+	904.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17096.0	NM_027872	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	0.5	8.0	6.0	0.0	1.0	6.5
Merged-chr13-8646028-3	chr13	8645595	8646595	+	904.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110345, intron 3 of 10)	L1_Mus3|LINE|L1	224949.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-149960356-2	chr1	149959856	149960856	+	904.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	B1_Mus2|SINE|Alu	934.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55879803-4	chr14	55879308	55880308	+	904.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019820, exon 3 of 3)	3' UTR (NM_019820, exon 3 of 3)	4448.0	NM_019820	56410.0	Mm.97163	NM_019820	ENSMUSG00000040380	Cbln3	-	cerebellin 3 precursor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-13817953-4	chr17	13817444	13818444	+	904.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151731, intron 5 of 33)	intron (NR_151731, intron 5 of 33)	-56550.0	NM_022311	21646.0	Mm.486358	NM_022311	ENSMUSG00000038347	Tcte2	AI429268|Tcte-2	t-complex-associated testis expressed 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84684342-5	chr18	84683925	84684925	+	904.6333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023149, intron 1 of 11)	intron (NM_023149, intron 1 of 11)	1277.0	NM_023149	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128094072-2	chr10	128093572	128094572	+	904.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_054078, intron 1 of 29)	intron (NM_054078, intron 1 of 29)	1289.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58214000-4	chr15	58213474	58214474	+	904.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026346, intron 1 of 8)	intron (NM_026346, intron 1 of 8)	918.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3903867-3	chr7	3903368	3904368	+	904.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011087, intron 1 of 9)	intron (NM_011087, intron 1 of 9)	-5718.0	NM_001289428	18729.0	Mm.326531	NM_008848		Pira6	12M1|Pira10|p91B	paired-Ig-like receptor A6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-72410161-3	chr2	72409680	72410680	+	904.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023057, exon 12 of 20)	exon (NM_023057, exon 12 of 20)	-66039.0	NM_025866	66953.0	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67220940-2	chr7	67220440	67221440	+	904.583374	f1_balb.idr|f1_c57bl6.idr	intron (NR_131044, intron 1 of 2)	intron (NR_131044, intron 1 of 2)	1518.0	NR_131044	76628.0	Mm.384589	NR_131043	ENSMUSG00000097527	1700112J16Rik	-	RIKEN cDNA 1700112J16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43265995-4	chr17	43265489	43266489	+	904.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-4358.0	NM_133776	77596.0	Mm.159950	NM_133776	ENSMUSG00000041293	Adgrf1	5031409J19Rik|Gpr110|KPG_009	adhesion G protein-coupled receptor F1	protein-coding	5.5	0.5	0.5	8.0	0.0	1.0
Merged-chr2-72848637-4	chr2	72848131	72849131	+	904.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34914.0	NR_102349	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-40932440-3	chr14	40931929	40932929	+	904.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	15780.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142394814-4	chr5	142394318	142395318	+	904.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC|LINE|L1	-6679.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78464044-3	chr10	78463558	78464558	+	904.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172134, intron 1 of 10)	intron (NM_172134, intron 1 of 10)	890.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143907246-3	chr7	143906759	143907759	+	904.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-25856.0	NR_105830	102465217.0		NR_105830	ENSMUSG00000099321	Mir6404	Gm28014|mmu-mir-6404	microRNA 6404	ncRNA	38.5	30.5	50.5	1.5	5.0	5.5
Merged-chr4-24850936-5	chr4	24850382	24851382	+	904.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033531, exon 1 of 10)	5' UTR (NM_001033531, exon 1 of 10)	242.0	NM_001163020	212390.0	Mm.409581	NM_001033531	ENSMUSG00000040387	Klhl32	6430524H05Rik|D4Ertd389e|Gm1356|mKIAA1900	kelch-like 32	protein-coding	0.0	3.0	2.0	10.0	3.0	3.0
Merged-chr9-124440422-6	chr9	124439834	124440834	+	904.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16547.0	NR_015516	75135.0	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17410454-6	chr6	17410012	17411012	+	904.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR81|LTR|Gypsy	-53445.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	24.0	22.5	17.5	14.5	8.0	22.0
Merged-chr1-53845117-4	chr1	53844610	53845610	+	904.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 21 of 28)	MTC|LTR|ERVL-MaLR	-4314.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-93152665-4	chr5	93152107	93153107	+	904.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009818, intron 3 of 9)	intron (NM_001009818, intron 3 of 9)	53888.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	9.5	10.0	13.0	3.5	4.5	0.0
Merged-chr13-107809264-4	chr13	107808781	107809781	+	904.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	L1MD3|LINE|L1	80783.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69044434-2	chr3	69043934	69044934	+	904.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025863, intron 1 of 2)	CpG	308.0	NM_025863	66949.0	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34857556-2	chr18	34857056	34858056	+	904.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-3651.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43030885-2	chr4	43030385	43031385	+	904.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023231, intron 2 of 9)	intron (NM_023231, intron 2 of 9)	499.0	NM_023231	66592.0	Mm.331565	NM_023231	ENSMUSG00000028455	Stoml2	0610038F01Rik|MSLP2|SLP-2	stomatin (Epb7.2)-like 2	protein-coding	27.0	69.5	38.0	29.0	67.5	37.0
Merged-chr7-16399218-4	chr7	16398747	16399747	+	904.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1949.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165587291-2	chr1	165586791	165587791	+	904.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	47250.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140697467-2	chr5	140696967	140697967	+	904.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347517, intron 2 of 22)	intron (NM_001347517, intron 2 of 22)	4911.0	NM_028833	74239.0	Mm.179704	NM_028833	ENSMUSG00000036555	Iqce	1700028P05Rik|mKIAA1023	IQ motif containing E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-30471140-2	chr15	30470640	30471640	+	904.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 2 of 21)	intron (NM_001355502, intron 2 of 21)	298547.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141618012-4	chr4	141617507	141618507	+	904.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001013780)	TTS (NM_001013780)	626.0	NM_145987	213989.0	Mm.34891	NM_145987	ENSMUSG00000043085	Tmem82	-	transmembrane protein 82	protein-coding	7.5	13.5	15.0	4.0	8.5	10.0
Merged-chr18-38340310-2	chr18	38339810	38340810	+	904.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1317.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84113815-2	chr12	84113315	84114315	+	904.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346528)	promoter-TSS (NM_001346528)	-513.0	NM_028821	105000.0	Mm.101525	NM_028821	ENSMUSG00000042523	Dnal1	1700010H15Rik|AW121714|Dnalc1|E330027P08Rik	dynein, axonemal, light chain 1	protein-coding	1.0	2.0	0.0	1.0	2.0	0.0
Merged-chr9-120564655-6	chr9	120564153	120565153	+	904.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178676, intron 10 of 10)	B4|SINE|B4	-6864.0	NM_025974	67115.0	Mm.289810	NM_025974	ENSMUSG00000025794	Rpl14	3100001N19Rik|AA407502|AL022816|CAG-ISL-7|CTG-B33|L14	ribosomal protein L14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31429074-2	chr14	31428574	31429574	+	904.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	7026.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-103321905-5	chr4	103321308	103322308	+	904.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025909, exon 3 of 9)	exon (NM_025909, exon 3 of 9)	7962.0	NM_025909	67013.0	Mm.30021	NM_025909	ENSMUSG00000035069	Oma1	2010001O09Rik|MPRP-1|ZMPOMA1	OMA1 zinc metallopeptidase	protein-coding	33.0	70.5	58.0	48.5	58.0	49.0
Merged-chr2-33427224-4	chr2	33426734	33427734	+	904.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276332, intron 1 of 1)	MIRb|SINE|MIR	4090.0	NM_001085507	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102034813-2	chr5	102034313	102035313	+	904.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	35108.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59261260-4	chr4	59260750	59261750	+	904.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105031, intron 2 of 3)	intron (NR_105031, intron 2 of 3)	1199.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35338049-1	chr7	35337549	35338549	+	904.5	f1_c57bl6.idr	intron (NM_027897, intron 1 of 14)	B2_Mm1t|SINE|B2	3812.0	NM_027897	52428.0	Mm.286600	NM_027897	ENSMUSG00000030494	Rhpn2	1300002E07Rik|AA536890|C85860|D7Ertd784e	rhophilin, Rho GTPase binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98855297-2	chr15	98854797	98855797	+	904.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033276, intron 25 of 54)	intron (NM_001033276, intron 25 of 54)	15908.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24162152-3	chr17	24161653	24162653	+	904.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172935, intron 3 of 10)	intron (NM_172935, intron 3 of 10)	1580.0	NM_172935	245847.0	Mm.87319	NM_172935	ENSMUSG00000036820	Amdhd2	5730457F11Rik	amidohydrolase domain containing 2	protein-coding	3.0	13.0	6.5	1.0	15.0	9.0
Merged-chr13-119601486-4	chr13	119600972	119601972	+	904.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177666, intron 2 of 3)	B1F1|SINE|Alu	-22347.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-30612021-2	chr17	30611521	30612521	+	904.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113560, intron 1 of 6)	intron (NM_001113560, intron 1 of 6)	638.0	NM_025374	109801.0	Mm.261984	NM_025374	ENSMUSG00000024026	Glo1	0610009E22Rik|1110008E19Rik|2510049H23Rik|AW550643|GLY1|Glo-1|Glo-1r|Glo-1s|Glo1-r|Glo1-s|Qglo	glyoxalase 1	protein-coding	0.0	6.0	5.5	0.0	4.5	3.0
Merged-chr8-104442427-4	chr8	104441923	104442923	+	904.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013380, intron 2 of 12)	intron (NM_001013380, intron 2 of 12)	624.0	NM_001013380	234663.0	Mm.289583	NM_001013380	ENSMUSG00000035770	Dync1li2	AA409702|C920003I06|Dncli2|Dnclic2|LIC2	dynein, cytoplasmic 1 light intermediate chain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58499365-2	chr16	58498865	58499865	+	904.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 2 of 10)	intron (NM_001357433, intron 2 of 10)	24061.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91003494-2	chr16	91002994	91003994	+	904.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045515, intron 2 of 32)	MER119|DNA|hAT-Charlie	7601.0	NM_001045515	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123864224-5	chr5	123863684	123864684	+	904.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_030701, exon 1 of 1)	3' UTR (NM_030701, exon 1 of 1)	1332.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81341730-2	chr7	81341230	81342230	+	904.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3504.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127165801-4	chr7	127165309	127166309	+	904.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27986.0	NM_001037810	20737.0	Mm.283714	NM_009259	ENSMUSG00000051457	Spn	A630014B01Rik|Cd43|Galgp|Ly-48|Ly48	sialophorin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-85502410-4	chr10	85501909	85502909	+	904.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028709, intron 1 of 16)	intron (NM_028709, intron 1 of 16)	-96002.0	NM_001017525	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	0.0	0.0	1.5	2.5	0.0	4.5
Merged-chr11-58978062-5	chr11	58977510	58978510	+	904.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290988)	promoter-TSS (NM_001290988)	-83.0	NM_001290988	94091.0	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	85.5	199.5	196.0	49.0	125.5	115.5
Merged-chr6-17629937-4	chr6	17629450	17630450	+	904.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7060.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	35.0	114.5	65.0	32.5	117.5	71.0
Merged-chr9-63044295-4	chr9	63043809	63044809	+	904.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-63430.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135188147-4	chr5	135187667	135188667	+	904.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011714, intron 1 of 18)	CpG	844.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-10845913-3	chr8	10845457	10846457	+	904.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36497.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118856832-4	chr9	118856336	118857336	+	904.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 9 of 13)	intron (NM_001113514, intron 9 of 13)	-69700.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80119096-4	chr18	80118585	80119585	+	904.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_053117, exon 3 of 3)	3' UTR (NM_053117, exon 3 of 3)	32397.0	NM_175028	240442.0	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-63665718-4	chr15	63665209	63666209	+	904.4249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143030.0	NM_031378	83492.0	Mm.335619	NM_031378	ENSMUSG00000079025	Gsdmc	Gsdmc1|Mlze	gasdermin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70943419-4	chr8	70942912	70943912	+	904.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4_19-int|LTR|ERVK	12097.0	NM_001357655	665828.0	Mm.482151	NM_001357655	ENSMUSG00000074252	Gm10654	EG665828	predicted gene 10654	protein-coding	10.5	8.0	3.0	1.0	15.0	5.5
Merged-chr17-79442790-3	chr17	79442328	79443328	+	904.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35057.0	NR_033463	74622.0	Mm.311921	NR_033463		4930429F11Rik	-	RIKEN cDNA 4930429F11 gene	ncRNA	54.5	71.0	48.0	0.5	0.0	3.5
Merged-chr5-125307797-4	chr5	125307329	125308329	+	904.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	33265.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	7.0	13.5	13.0	18.0	5.5	9.5
Merged-chr16-4907628-4	chr16	4907124	4908124	+	904.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 2 of 17)	intron (NM_001357062, intron 2 of 17)	21524.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-33900219-4	chr7	33899716	33900716	+	904.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44769.0	NM_178308	110187.0	Mm.155750	NM_178308	ENSMUSG00000066586	Scgb2b26	Abpbg26|Abpbg4|Abpg|C2d|Scgb2b4	secretoglobin, family 2B, member 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64813651-4	chr5	64813141	64814141	+	904.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	10118.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70898216-4	chr8	70897717	70898717	+	904.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029751)	promoter-TSS (NM_029751)	-774.0	NM_029751	76808.0	Mm.379251	NM_029751	ENSMUSG00000045128	Rpl18a	2510019J09Rik	ribosomal protein L18A	protein-coding	25.5	95.0	43.5	32.5	54.0	67.5
Merged-chr11-119268812-2	chr11	119268312	119269312	+	904.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008064, intron 1 of 19)	intron (NM_008064, intron 1 of 19)	849.0	NM_008064	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	60.0	112.5	79.5	72.0	121.0	133.0
Merged-chr14-31391093-2	chr14	31390593	31391593	+	904.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	B4A|SINE|B4	26584.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-97465308-2	chr9	97464806	97465806	+	904.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_022319, intron 10 of 17)	intron (NM_022319, intron 10 of 17)	-95348.0	NM_030219	78911.0	Mm.108347	NM_030219	ENSMUSG00000032451	Trim42	4930486B16Rik	tripartite motif-containing 42	protein-coding	4.5	0.0	4.0	0.0	0.0	0.0
Merged-chr12-113144725-3	chr12	113144272	113145272	+	904.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024223, intron 5 of 6)	intron (NM_024223, intron 5 of 6)	4167.0	NM_001347443	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45735457-5	chr17	45734945	45735945	+	904.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 1 of 4)	intron (NR_152153, intron 1 of 4)	939.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	9.0	1.0	0.0	2.5	5.0	0.0
Merged-chr17-87474434-3	chr17	87473916	87474916	+	904.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27481.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	0.5	21.0	0.0	2.5	9.5	1.0
Merged-chr15-64240924-3	chr15	64240421	64241421	+	904.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	71752.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4232953-4	chr12	4232454	4233454	+	904.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134046, intron 2 of 6)	intron (NM_134046, intron 2 of 6)	1011.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43910846-3	chr1	43910367	43911367	+	904.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MusHAL1|LINE|L1	-23127.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-94734511-3	chr9	94734012	94735012	+	904.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 4 of 15)	intron (NM_177909, intron 4 of 15)	-17317.0	NR_106116	102465763.0		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106797548-4	chr1	106797093	106798093	+	904.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009190)	promoter-TSS (NM_009190)	-868.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	6.0	44.5	23.0	9.0	29.0	29.5
Merged-chr10-127075339-2	chr10	127074839	127075839	+	904.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3568.0	NM_001301014	216439.0	Mm.336761	NM_001033263	ENSMUSG00000025422	Agap2	AGAP-2|Centg1|PIKE|cnt-g1|mKIAA0167	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-32249267-3	chr6	32248756	32249756	+	904.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 5 of 31)	intron (NM_175750, intron 5 of 31)	198968.0	NM_029587	76382.0	Mm.23510	NM_029587	ENSMUSG00000029766	1700012A03Rik	AI429084	RIKEN cDNA 1700012A03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60261665-3	chr10	60261167	60262167	+	904.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15961.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120167940-4	chr5	120167412	120168412	+	904.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028762, intron 21 of 23)	intron (NM_028762, intron 21 of 23)	-28649.0	NR_045793	100503427.0	Mm.446834	NR_045793	ENSMUSG00000097368	Gm10390	-	predicted gene 10390	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124247729-4	chr8	124247241	124248241	+	904.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139272, intron 1 of 15)	MTD|LTR|ERVL-MaLR	16347.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	4.5	20.5	8.5	10.0	9.5	3.5
Merged-chr17-28518199-4	chr17	28517698	28518698	+	904.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12663.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3951622-4	chr19	3951147	3952147	+	904.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7161.0	NM_028545	73458.0	Mm.482922	NM_028545	ENSMUSG00000037263	Aldh3b3	1700055N04Rik	aldehyde dehydrogenase 3 family, member B3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-48950195-7	chr2	48949673	48950673	+	904.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355296)	promoter-TSS (NM_001355296)	61.0	NM_001355296	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62182618-3	chr10	62182100	62183100	+	904.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11627.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106395665-4	chr1	106395146	106396146	+	904.2583619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150985.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146030391-4	chr3	146029883	146030883	+	904.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42513.0	NM_001166064	214804.0	Mm.268854	NM_001166064	ENSMUSG00000036863	Syde2	C430017H16Rik	synapse defective 1, Rho GTPase, homolog 2 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21593507-4	chr9	21592960	21593960	+	904.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138303)	promoter-TSS (NM_138303)	-629.0	NM_138303	74766.0	Mm.475712	NM_138303	ENSMUSG00000032182	Yipf2	1300010K09Rik	Yip1 domain family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111289669-4	chr9	111289169	111290169	+	904.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	17824.0	NM_175266	77781.0	Mm.209005	NM_175266	ENSMUSG00000046785	Epm2aip1	A930003G21Rik|mKIAA0766	EPM2A (laforin) interacting protein 1	protein-coding	65.0	165.5	149.0	84.0	136.0	126.0
Merged-chr9-124143031-4	chr9	124142568	124143568	+	904.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21525.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102469950-2	chr11	102469442	102470442	+	904.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010575)	promoter-TSS (NM_010575)	-59.0	NM_010575	16399.0	Mm.26646	NM_010575	ENSMUSG00000034664	Itga2b	AI172977|CD41|CD41B|GpIIb|alphaIIb	integrin alpha 2b	protein-coding	0.0	0.5	2.5	1.5	8.0	1.5
Merged-chr7-137314551-4	chr7	137314048	137315048	+	904.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010096)	promoter-TSS (NM_010096)	-103.0	NM_010096	13593.0	Mm.258708	NM_010096	ENSMUSG00000010476	Ebf3	3110018A08Rik|O/E-2|mKIAA4201	early B cell factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-62722500-6	chr1	62722025	62723025	+	904.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	19208.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-20934793-4	chr5	20934309	20935309	+	904.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080977, intron 1 of 7)	intron (NM_001080977, intron 1 of 7)	-16180.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121104239-4	chr8	121103735	121104735	+	904.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172761, intron 4 of 7)	intron (NM_172761, intron 4 of 7)	4144.0	NM_172761	234814.0	Mm.31690	NM_172761	ENSMUSG00000031816	Mthfsd	AW049977|BC052066|C920004D05	methenyltetrahydrofolate synthetase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121689774-3	chr10	121689265	121690265	+	904.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177335, intron 11 of 12)	intron (NM_177335, intron 11 of 12)	48064.0	NM_177335	216393.0	Mm.119759	NM_177335	ENSMUSG00000047642	D930020B18Rik	1500017I17Rik	RIKEN cDNA D930020B18 gene	protein-coding	0.5	1.0	1.0	1.5	0.0	0.0
Merged-chr10-95880335-8	chr10	95879850	95880850	+	904.2374880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60313.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4199029-4	chr11	4198554	4199554	+	904.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	MIRc|SINE|MIR	12221.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-62720972-4	chr1	62720495	62721495	+	904.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	17678.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-66842360-4	chr4	66841849	66842849	+	904.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021297, exon 3 of 3)	3' UTR (NM_021297, exon 3 of 3)	14798.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	37.0	69.5	32.0	44.0	92.0	48.5
Merged-chr8-70763450-6	chr8	70762914	70763914	+	904.194458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023065, intron 6 of 7)	intron (NM_023065, intron 6 of 7)	-2493.0	NM_183170	234384.0	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	1.5	9.0	17.0	3.0	12.0	11.0
Merged-chr11-46479498-4	chr11	46478997	46479997	+	904.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_134250, exon 7 of 7)	3' UTR (NM_134250, exon 7 of 7)	24566.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	25.0	42.5	21.0	5.0	16.5	24.0
Merged-chr15-34775927-4	chr15	34775422	34776422	+	904.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61433.0	NM_181317	16539.0	Mm.71045	NM_181317	ENSMUSG00000050963	Kcns2	E130006J24Rik|Kv9.2	K+ voltage-gated channel, subfamily S, 2	protein-coding	8.0	16.0	6.0	0.0	6.0	3.5
Merged-chr4-147335554-2	chr4	147335054	147336054	+	904.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	159688.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-71284701-2	chr10	71284201	71285201	+	904.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_145420, intron 1 of 6)	intron (NM_145420, intron 1 of 6)	561.0	NM_145420	216080.0	Mm.270530	NM_145420	ENSMUSG00000019927	Ube2d1	UBCH5	ubiquitin-conjugating enzyme E2D 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-115318725-2	chr10	115318225	115319225	+	904.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3134.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87153111-1	chr17	87152611	87153611	+	904.1666869999999	f0_balb.idr	Intergenic	Intergenic	41831.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	6.0	2.5	12.0	23.5	61.5	35.0
Merged-chr10-39499291-3	chr10	39498792	39499792	+	904.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122893, intron 3 of 13)	intron (NM_001122893, intron 3 of 13)	-113642.0	NM_134000	103213.0	Mm.436686	NM_134000	ENSMUSG00000019842	Traf3ip2	AI429613|Act1|CIKS	TRAF3 interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-32610885-4	chr6	32610384	32611384	+	904.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22692.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	10.0	4.5	16.5	0.0	8.5	5.0
Merged-chr9-123927436-4	chr9	123926924	123927924	+	904.162476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41268.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-15685386-4	chr9	15684878	15685878	+	904.1416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24360.0	NM_001357566	234967.0	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122219529-4	chr7	122218977	122219977	+	904.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027363)	promoter-TSS (NM_027363)	-19.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61095725-4	chr18	61095243	61096243	+	904.1124880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-9829.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167980529-3	chr2	167980014	167981014	+	904.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001080708)	TTS (NM_001080708)	30079.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91983136-2	chr2	91982636	91983636	+	904.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_011957, intron 11 of 11)	intron (NM_011957, intron 11 of 11)	-19573.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	4.5	1.5	0.0	4.5	1.5	0.0
Merged-chr12-55483394-5	chr12	55482880	55483880	+	904.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	9267.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81305012-4	chr10	81304521	81305521	+	904.087524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 2 of 17)	intron (NM_001293647, intron 2 of 17)	12058.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10982741-4	chr16	10982233	10983233	+	904.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	L2b|LINE|L2	10388.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102987085-4	chr4	102986578	102987578	+	904.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163767, intron 1 of 4)	intron (NM_001163767, intron 1 of 4)	699.0	NM_026100	67344.0	Mm.111346	NM_026100	ENSMUSG00000028523	Tctex1d1	1700055O19Rik	Tctex1 domain containing 1	protein-coding	4.5	15.5	1.5	0.0	4.5	4.0
Merged-chr10-21907246-4	chr10	21906716	21907716	+	904.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 1 of 13)	intron (NM_001161845, intron 1 of 13)	25032.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91789480-3	chr12	91788977	91789977	+	904.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3041.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-102622506-5	chr9	102621874	102622874	+	904.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081122, intron 2 of 16)	intron (NM_001081122, intron 2 of 16)	3750.0	NM_001301689	28135.0	Mm.38910	NM_001081122	ENSMUSG00000032534	Cep63	4921501M07|AL450317.13gm1|AW107703|CD20R|D9Mgc41|D9Mgc48e|ET2	centrosomal protein 63	protein-coding	13.5	59.0	37.0	22.5	58.0	26.5
Merged-chr13-107449911-3	chr13	107449398	107450398	+	904.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19924.0	NR_045083	105120.0	Mm.417700	NR_045083	ENSMUSG00000114780	AI197445	-	expressed sequence AI197445	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25135709-3	chr15	25135211	25136211	+	904.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	278053.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50419057-3	chr17	50418545	50419545	+	904.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MuRRS4-int|LTR|ERV1	-90502.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0.0	3.5	0.5	0.0	5.0	1.5
Merged-chr10-94518358-3	chr10	94517851	94518851	+	904.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172051, intron 1 of 3)	RLTR11A2|LTR|ERVK	3494.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84820457-4	chr3	84819966	84820966	+	904.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177773, intron 1 of 13)	MER58A|DNA|hAT-Charlie	4889.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	10.5	0.5	9.0	6.5	14.5	2.5
Merged-chr19-11494730-4	chr19	11494222	11495222	+	904.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164202, intron 1 of 4)	intron (NM_001164202, intron 1 of 4)	2684.0	NM_001164202	666926.0	Mm.486382	NM_001164202	ENSMUSG00000058470	Gm8369	EG666926	predicted gene 8369	protein-coding	13.0	7.0	4.0	5.0	23.0	14.5
Merged-chr4-148644091-5	chr4	148643647	148644647	+	904.0300289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085505, intron 1 of 10)	intron (NM_001085505, intron 1 of 10)	830.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	1.5	8.5	3.0	7.5	4.0	13.5
Merged-chr18-62176815-11	chr18	62176210	62177210	+	904.0242310000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3271.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	2.5	6.5	8.0	7.5	16.5	15.0
Merged-chr7-24890635-4	chr7	24890138	24891138	+	904.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360119)	TTS (NM_001360119)	5725.0	NM_001360115	20085.0	Mm.300281	NM_023133	ENSMUSG00000040952	Rps19	Dsk3	ribosomal protein S19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-87812851-3	chr10	87812344	87813344	+	904.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45421.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	2.0	1.5	2.5	2.0	5.5	2.5
Merged-chr17-50120292-4	chr17	50119815	50120815	+	904.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	70182.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	59.0	94.0	90.5	21.0	1.0	7.5
Merged-chr8-45363599-2	chr8	45363099	45364099	+	904.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153535, intron 1 of 13)	RMER10A|LTR|ERVL	18692.0	NM_153535	212326.0	Mm.51259	NM_153535	ENSMUSG00000070044	Fam149a	AW213256|mKIAA4166	family with sequence similarity 149, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80038307-2	chr10	80037807	80038807	+	904.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025554, intron 2 of 6)	intron (NM_025554, intron 2 of 6)	1352.0	NM_025554	66420.0	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99632358-2	chr5	99631858	99632858	+	904.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	96702.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122573214-3	chr3	122572719	122573719	+	904.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114665, intron 2 of 15)	intron (NM_001114665, intron 2 of 15)	-31538.0	NR_106117	102465764.0		NR_106117	ENSMUSG00000104773	Mir7657	mmu-mir-7657	microRNA 7657	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3331937-1	chr11	3331437	3332437	+	904.0	f0_balb.idr	exon (NM_178149, exon 2 of 6)	exon (NM_178149, exon 2 of 6)	1206.0	NM_178149	216505.0	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101391366-2	chr7	101390866	101391866	+	904.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 12 of 33)	L2b|LINE|L2	-3022.0	NM_198096	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114729026-2	chr11	114728526	114729526	+	904.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034878, intron 1 of 12)	intron (NM_001034878, intron 1 of 12)	1614.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71209554-4	chr2	71209040	71210040	+	904.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2166.0	NM_001198875	13427.0	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184808822-2	chr1	184808322	184809322	+	904.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290273, intron 1 of 6)	intron (NM_001290273, intron 1 of 6)	2478.0	NM_001290273	66112.0	Mm.272457	NM_001081361	ENSMUSG00000026621	Marc1	1300013F15Rik|Mosc1	mitochondrial amidoxime reducing component 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111924498-2	chr10	111923998	111924998	+	904.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTG)n|Simple_repeat|Simple_repeat	-48197.0	NM_178610	52705.0	Mm.34606	NM_178610	ENSMUSG00000063334	Krr1	2610511F02Rik|AI255219|AI428520|D10Ertd773e|Hrb2	KRR1, small subunit (SSU) processome component, homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108446810-2	chr6	108446310	108447310	+	904.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-42933.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	2.0	0.0	2.0	0.5	9.5	11.0
Merged-chr6-67168918-3	chr6	67168418	67169418	+	904.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25B|LTR|ERVK	-98061.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27696546-2	chr2	27696046	27697046	+	904.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-12746.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35342762-3	chr2	35342275	35343275	+	904.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5766.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81315117-2	chr10	81314617	81315617	+	904.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008844, exon 16 of 18)	exon (NM_008844, exon 16 of 18)	-5986.0	NM_027381	70312.0	Mm.87628	NM_027381	ENSMUSG00000034889	Cactin	2510012J08Rik	cactin, spliceosome C complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127669465-2	chr10	127668965	127669965	+	904.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045171)	TTS (NR_045171)	2342.0	NR_045171	72243.0	Mm.482902	NR_045171	ENSMUSG00000040195	1700012D01Rik	-	RIKEN cDNA 1700012D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-16989355-2	chr11	16988855	16989855	+	904.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 5 of 9)	RMER21B|LTR|ERV1	19363.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29237720-4	chr7	29237216	29238216	+	904.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110201)	promoter-TSS (NM_001110201)	122.0	NM_001357668	77254.0	Mm.36699	NM_029887	ENSMUSG00000030588	Yif1b	9430029K10Rik|Yip1b	Yip1 interacting factor homolog B (S. cerevisiae)	protein-coding	51.0	100.0	73.0	21.0	48.5	34.5
Merged-chr9-7828025-2	chr9	7827525	7828525	+	904.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007465, intron 2 of 7)	MTC|LTR|ERVL-MaLR	8781.0	NM_001291503	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97305669-2	chr7	97305169	97306169	+	904.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010248, exon 10 of 10)	3' UTR (NM_010248, exon 10 of 10)	20295.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25547366-2	chr14	25546866	25547866	+	904.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 3 of 23)	intron (NM_183208, intron 3 of 23)	12927.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111992822-3	chr10	111992352	111993352	+	904.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028608, intron 2 of 5)	intron (NM_028608, intron 2 of 5)	4412.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-38294491-1	chr8	38293991	38294991	+	904.0	f0_c57.idr	intron (NM_145841, intron 1 of 7)	RLTR45|LTR|ERVK	-42289.0	NR_029884	723860.0		NR_029884	ENSMUSG00000065457	Mir383	Mirn383|mir-383|mmu-mir-383	microRNA 383	ncRNA	0.0	8.5	1.5	0.0	1.5	6.5
Merged-chr16-29944692-3	chr16	29944194	29945194	+	904.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34430.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37098654-1	chr9	37098154	37099154	+	904.0	f0_balb.idr	intron (NM_001029838, intron 1 of 12)	intron (NM_001029838, intron 1 of 12)	48668.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	0.0	0.0	2.5	0.0	0.0	0.5
Merged-chr2-166068263-2	chr2	166067763	166068763	+	904.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 19 of 22)	intron (NM_008679, intron 19 of 22)	75626.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-33514737-1	chr6	33514237	33515237	+	904.0	f0_balb.idr	intron (NM_009148, intron 9 of 17)	intron (NM_009148, intron 9 of 17)	265609.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76456405-3	chr11	76455910	76456910	+	904.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 10 of 21)	intron (NM_001346670, intron 10 of 21)	12055.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-136756265-4	chr3	136755751	136756751	+	904.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	86185.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-85239267-3	chr6	85238769	85239769	+	904.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178639, intron 10 of 13)	intron (NM_178639, intron 10 of 13)	51338.0	NM_010131	13796.0	Mm.391473	NM_010131	ENSMUSG00000033726	Emx1	-	empty spiracles homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-46022459-3	chr1	46021942	46022942	+	904.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037691, intron 3 of 3)	intron (NR_037691, intron 3 of 3)	7995.0	NR_037690	212225.0	Mm.78540	NM_172504	ENSMUSG00000044457	Stk-ps2	4930509O22|EG212225|Gm4776	serine/threonine kinase 2	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-26373828-2	chr10	26373328	26374328	+	904.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001347467, exon 1 of 21)	5' UTR (NM_001347467, exon 1 of 21)	244.0	NM_001359255	237339.0	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	L3MBTL3 histone methyl-lysine binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102385196-6	chr12	102384706	102385706	+	904.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 8 of 9)	intron (NM_177620, intron 8 of 9)	54607.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154550284-2	chr2	154549784	154550784	+	904.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029305)	TTS (NM_029305)	1380.0	NM_029305	75480.0	Mm.440434	NM_029305	ENSMUSG00000038523	1700003F12Rik	-	RIKEN cDNA 1700003F12 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-130129182-4	chr10	130128688	130129688	+	903.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2133.0	NM_146674	258669.0	Mm.377631	NM_146674	ENSMUSG00000095804	Olfr824	MOR210-3	olfactory receptor 824	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-40936604-4	chr14	40936105	40937105	+	903.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	11604.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106887952-4	chr8	106887451	106888451	+	903.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145412, intron 1 of 3)	intron (NM_145412, intron 1 of 3)	5642.0	NM_145412	214987.0	Mm.490308	NM_145412	ENSMUSG00000046691	Chtf8	5830457O10Rik|Ctf8|Derpc	CTF8, chromosome transmission fidelity factor 8	protein-coding	0.0	0.0	3.0	0.0	0.0	0.0
Merged-chr3-81123651-4	chr3	81123157	81124157	+	903.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	87241.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	5.0	18.5	3.5	10.0	2.0	2.0
Merged-chr11-103987590-4	chr11	103987100	103988100	+	903.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20729.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40082585-3	chr12	40082077	40083077	+	903.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009132, intron 5 of 13)	intron (NM_009132, intron 5 of 13)	-44590.0	NM_001039515	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168553835-3	chr2	168553352	168554352	+	903.9110720000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037177, intron 3 of 6)	intron (NM_001037177, intron 3 of 6)	36513.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127583107-2	chr10	127582600	127583600	+	903.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 19 of 88)	intron (NM_008512, intron 19 of 88)	38048.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	10.5	1.5	1.5	2.0	3.0	5.0
Merged-chr10-81299757-4	chr10	81299290	81300290	+	903.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	6827.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-84141927-3	chr11	84141435	84142435	+	903.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12367.0	NM_172562	217031.0	Mm.45159	NM_172562	ENSMUSG00000018651	Tada2a	AV319371|D030022J10Rik|Tada2l	transcriptional adaptor 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-66873588-3	chr10	66873087	66874087	+	903.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46797.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135947943-3	chr4	135947441	135948441	+	903.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357529, exon 1 of 9)	5' UTR (NM_001357529, exon 1 of 9)	535.0	NM_001357530	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171248879-6	chr1	171248372	171249372	+	903.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1257.0	NM_172845	240913.0	Mm.491147	NM_172845	ENSMUSG00000006403	Adamts4	ADAM-TS4|ADAMTS-2|ADMP-1	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4	protein-coding	0.0	11.0	3.0	1.0	7.5	13.0
Merged-chr4-129503015-2	chr4	129502514	129503514	+	903.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10567.0	NM_010807	17357.0	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	2.5	5.5	4.5	2.5	2.5	4.0
Merged-chr17-5196094-2	chr17	5195594	5196594	+	903.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	201020.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	1.0	0.0	6.0	3.0	0.0	1.0
Merged-chr2-132007590-3	chr2	132007059	132008059	+	903.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175445, intron 3 of 10)	intron (NM_175445, intron 3 of 10)	22429.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.0	0.0	0.0	4.5	11.5	15.0
Merged-chr3-98069486-4	chr3	98068969	98069969	+	903.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 2 of 33)	intron (NM_010928, intron 2 of 33)	55931.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80689802-2	chr10	80689302	80690302	+	903.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 3 of 3)	intron (NM_172457, intron 3 of 3)	12018.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145765159-4	chr6	145764648	145765648	+	903.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43235.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	16.5	17.0	19.0	10.0	12.5	23.5
Merged-chr1-134066277-3	chr1	134065791	134066791	+	903.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCC)n|Simple_repeat|Simple_repeat	12864.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16046048-4	chr19	16045542	16046542	+	903.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60967.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	1.0	10.0	2.0	2.5	9.0	3.0
Merged-chr1-71811465-4	chr1	71810992	71811992	+	903.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76620.0	NR_027659	667931.0	Mm.214128	NR_027658	ENSMUSG00000099707	Gm8883	EG667931|Gm554	predicted gene 8883	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67304005-4	chr5	67303504	67304504	+	903.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2951.0	NM_178651	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85526252-4	chr12	85525769	85526769	+	903.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	52379.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-109903002-3	chr13	109902465	109903465	+	903.8110960000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035442)	promoter-TSS (NR_035442)	-844.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112674225-3	chr13	112673720	112674720	+	903.7999880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178746, intron 2 of 14)	intron (NM_178746, intron 2 of 14)	13454.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	5.0	11.5	0.0	2.5	5.0	0.5
Merged-chr15-78942893-4	chr15	78942374	78943374	+	903.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133800)	TTS (NM_133800)	-4850.0	NM_001039156	110253.0	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	13.0	3.0	2.5	6.0	0.0	1.5
Merged-chr15-97884409-4	chr15	97883897	97884897	+	903.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009504, intron 3 of 9)	intron (NM_009504, intron 3 of 9)	23899.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-73356179-3	chr8	73355670	73356670	+	903.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2630.0	NM_010687	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0.0	3.0	0.0	0.0	1.5	0.0
Merged-chr9-47588532-3	chr9	47588058	47589058	+	903.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	MTEa|LTR|ERVL-MaLR	58206.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	7.0	30.5	19.0	80.5	205.0	168.0
Merged-chr8-94167434-4	chr8	94166952	94167952	+	903.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E1|LTR|ERVL-MaLR	-5166.0	NM_008630	17750.0	Mm.147226	NM_008630	ENSMUSG00000031762	Mt2	AA409533|MT-II|Mt-2	metallothionein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95192214-4	chr4	95191711	95192711	+	903.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-139989.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53312663-4	chr19	53312129	53313129	+	903.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	intron (NM_001360348, intron 1 of 5)	1184.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-36854226-4	chr3	36853715	36854715	+	903.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8891.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91694899-4	chr16	91694392	91695392	+	903.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026994, intron 8 of 11)	intron (NM_026994, intron 8 of 11)	5994.0	NR_040389	100038392.0	Mm.440384	NR_040389	ENSMUSG00000085169	Gm10785	-	predicted gene 10785	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4195413-4	chr12	4194954	4195954	+	903.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 6 of 21)	intron (NM_001159537, intron 6 of 21)	38511.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132009277-2	chr1	132008777	132009777	+	903.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_007923, intron 1 of 4)	intron (NM_007923, intron 1 of 4)	1672.0	NM_007923	13714.0	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49080857-2	chr11	49080357	49081357	+	903.7000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271677, intron 1 of 2)	intron (NM_001271677, intron 1 of 2)	4270.0	NM_001271677	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191070433-4	chr1	191069881	191070881	+	903.6904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198654, intron 3 of 5)	intron (NM_198654, intron 3 of 5)	7360.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	84.0	203.5	180.0	19.5	52.0	65.5
Merged-chr15-8463029-4	chr15	8462532	8463532	+	903.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18569.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161195879-7	chr1	161195402	161196402	+	903.669067	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36588.0	NM_001195189	100502590.0	Mm.449990	NM_001195189	ENSMUSG00000049160	Tex50	4930469G21Rik	testis expressed 50	protein-coding	7.0	16.5	3.5	5.5	24.5	12.5
Merged-chr13-88823757-3	chr13	88823232	88824232	+	903.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037987, intron 1 of 10)	(CA)n|Simple_repeat|Simple_repeat	2260.0	NM_001037987	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116647945-3	chr11	116647450	116648450	+	903.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030206, intron 3 of 3)	intron (NM_030206, intron 3 of 3)	6363.0	NM_030206	114886.0	Mm.34598	NM_030206	ENSMUSG00000020810	Cygb	3110001K20Rik|HGb|Staap	cytoglobin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45362947-3	chr7	45362472	45363472	+	903.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029741, intron 1 of 29)	intron (NM_029741, intron 1 of 29)	-3189.0	NR_015480	50994.0	Mm.389897	NM_016664	ENSMUSG00000091510	Mtag2	MAG	metastasis associated gene 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76279682-3	chr14	76279184	76280184	+	903.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28222.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115994515-3	chr6	115994056	115995056	+	903.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026376, exon 1 of 36)	exon (NM_026376, exon 1 of 36)	449.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4238007-3	chr8	4237471	4238471	+	903.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164172)	promoter-TSS (NM_001164172)	-769.0	NM_011944	26400.0	Mm.3906	NM_011944	ENSMUSG00000002948	Map2k7	5930412N11Rik|JNKK 2|Jnkk2|MAPKK 7|MEK 7|Mapkk7|Mek7|Mkk7|Prkmk7|sek2	mitogen-activated protein kinase kinase 7	protein-coding	3.0	16.0	14.0	3.0	15.0	10.5
Merged-chr5-105155778-3	chr5	105155273	105156273	+	903.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-16187.0	NM_001359080	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40545748-2	chr12	40545248	40546248	+	903.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	99695.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-19874982-1	chr13	19874482	19875482	+	903.6666869999999	f0_balb.idr	Intergenic	Lx8b|LINE|L1	-50725.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	12.5	1.0	10.0	6.0	9.5	4.0
Merged-chr2-126466857-3	chr2	126466291	126467291	+	903.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 3 of 27)	intron (NM_001359975, intron 3 of 27)	24762.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-30010748-3	chr17	30010209	30011209	+	903.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151443, intron 1 of 4)	URR1B|DNA|hAT-Charlie	5670.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-27106889-2	chr8	27106389	27107389	+	903.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_054044, intron 2 of 18)	intron (NM_054044, intron 2 of 18)	21048.0	NM_054044	78560.0	Mm.87046	NM_054044	ENSMUSG00000031486	Adgra2	8430414O08Rik|9530074E10Rik|Gpr124|Tem5|mKIAA1531	adhesion G protein-coupled receptor A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94782868-4	chr8	94782362	94783362	+	903.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009142)	TTS (NM_009142)	10682.0	NM_009142	20312.0	Mm.103711	NM_009142	ENSMUSG00000031778	Cx3cl1	AB030188|ABCD-3|AI848747|CX3C|Cxc3|D8Bwg0439e|Scyd1	chemokine (C-X3-C motif) ligand 1	protein-coding	5.5	15.0	5.0	5.5	1.5	0.5
Merged-chr2-45105852-4	chr2	45105349	45106349	+	903.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	4428.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-47007316-4	chr7	47006778	47007778	+	903.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175318, intron 1 of 5)	intron (NM_175318, intron 1 of 5)	1136.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128701922-4	chr2	128701457	128702457	+	903.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	3042.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35874622-4	chr16	35874112	35875112	+	903.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR84b|LTR|ERVL	-3230.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109872472-3	chr8	109871949	109872949	+	903.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122594, intron 1 of 18)	intron (NM_001122594, intron 1 of 18)	3846.0	NM_001122594	244650.0	Mm.23494	NM_001122594	ENSMUSG00000031732	Phlpp2	AI481772|C130044A18Rik|Phlppl	PH domain and leucine rich repeat protein phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99335204-5	chr5	99334734	99335734	+	903.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-82307.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-33980928-8	chr6	33980444	33981444	+	903.587524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48504.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21353822-4	chr16	21353306	21354306	+	903.587524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20450.0	NR_131983	76222.0	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-28513192-4	chr2	28512685	28513685	+	903.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145834)	promoter-TSS (NM_001145834)	18.0	NM_001145834	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51270165-4	chr3	51269669	51270669	+	903.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 4 of 9)	intron (NM_023502, intron 4 of 9)	-6592.0	NR_073429	67746.0	Mm.441177	NR_073429	ENSMUSG00000087440	4930577N17Rik	-	RIKEN cDNA 4930577N17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88754468-3	chr3	88753984	88754984	+	903.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018804, intron 2 of 3)	B3A|SINE|B2	18115.0	NM_018804	229521.0	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	0.0	0.5	0.0	0.0	0.5	0.5
Merged-chr15-77343586-3	chr15	77343087	77344087	+	903.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36534.0	NM_053104	93686.0	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94546193-8	chr16	94545663	94546663	+	903.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19534.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-19019776-5	chr11	19019326	19020326	+	903.5599980000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001193271)	promoter-TSS (NM_001193271)	-857.0	NM_010789	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	1.0	15.0	3.0	1.5	17.5	8.5
Merged-chr3-144628876-4	chr3	144628352	144629352	+	903.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58425.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-144247110-4	chr1	144246615	144247615	+	903.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015811, intron 3 of 4)	intron (NM_015811, intron 3 of 4)	1989.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22151024-6	chr9	22150453	22151453	+	903.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-5893.0	NM_001082532	66268.0	Mm.28924	NM_025457	ENSMUSG00000010607	Pigyl	1810008A14Rik|PIG-Y|Pigy	phosphatidylinositol glycan anchor biosynthesis, class Y-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-75413108-4	chr12	75412619	75413619	+	903.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175644, intron 2 of 2)	L2a|LINE|L2	3662.0	NM_175644	217674.0	Mm.252250	NM_175644	ENSMUSG00000048982	Gphb5	OGH|Zlut1	glycoprotein hormone beta 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-18617631-4	chr19	18617104	18618104	+	903.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 1 of 9)	MIRb|SINE|MIR	14209.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	3.0	2.5	0.5	5.0	11.0	12.0
Merged-chr15-78119910-4	chr15	78119399	78120399	+	903.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007583)	promoter-TSS (NM_007583)	-619.0	NM_007583	12300.0	Mm.277338	NM_007583	ENSMUSG00000019146	Cacng2	AW060990|B230105C07Rik|B930041E13Rik|stargazer|stargazin|stg|wag|waggler	calcium channel, voltage-dependent, gamma subunit 2	protein-coding	0.0	5.5	0.0	0.0	0.0	0.0
Merged-chr10-24633776-2	chr10	24633276	24634276	+	903.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	38334.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56637334-4	chr19	56636847	56637847	+	903.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85025.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58891029-2	chr9	58890529	58891529	+	903.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008684, intron 23 of 28)	intron (NM_008684, intron 23 of 28)	67517.0	NM_001081192	330953.0	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30442695-3	chr2	30442207	30443207	+	903.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138748, intron 8 of 9)	intron (NM_138748, intron 8 of 9)	26657.0	NM_138748	110854.0	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-13009261-4	chr7	13008745	13009745	+	903.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024699, intron 1 of 2)	intron (NM_001024699, intron 1 of 2)	607.0	NM_001024699	232879.0	Mm.279272	NM_001024699	ENSMUSG00000049600	Zbtb45	BB161562|Gm157|Zfp499	zinc finger and BTB domain containing 45	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr8-39955681-3	chr8	39955182	39956182	+	903.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6C|LTR|ERVK	-313004.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	3.5	2.0	2.0	13.0	17.0	16.0
Merged-chr9-22388725-2	chr9	22388225	22389225	+	903.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028390, intron 1 of 23)	intron (NM_028390, intron 1 of 23)	481.0	NM_028390	68743.0	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97580387-5	chr7	97579907	97580907	+	903.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177947)	promoter-TSS (NM_001177947)	511.0	NM_001081267	233532.0	Mm.43977	NM_001081267	ENSMUSG00000035623	Rsf1	4832420A03Rik|C030033M12Rik|Gm164|Hbxap|XAP8|p325	remodeling and spacing factor 1	protein-coding	27.0	30.0	30.5	20.0	31.0	27.0
Merged-chr2-45058469-2	chr2	45057969	45058969	+	903.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-35292.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51082875-4	chr14	51082316	51083316	+	903.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8261.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	36.5	71.0	75.5	45.0	120.0	85.5
Merged-chr19-41597741-4	chr19	41597239	41598239	+	903.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9088.0	NR_106166	102465884.0		NR_106166	ENSMUSG00000098286	Mir8091	Gm27575|mmu-mir-8091	microRNA 8091	ncRNA	10.5	12.0	7.5	0.0	4.0	2.5
Merged-chr9-21729424-2	chr9	21728924	21729924	+	903.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252659, intron 1 of 17)	intron (NM_001252659, intron 1 of 17)	5848.0	NM_010700	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6285241-2	chr19	6284741	6285741	+	903.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	8345.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113549972-2	chr13	113549472	113550472	+	903.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47128.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125637861-2	chr7	125637364	125638364	+	903.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34435.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	1.5	0.0	2.5	1.5	0.0	0.0
Merged-chr7-81347132-2	chr7	81346632	81347632	+	903.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007755, exon 12 of 12)	3' UTR (NM_007755, exon 12 of 12)	-1898.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84623482-2	chr2	84622982	84623982	+	903.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355067, intron 1 of 15)	intron (NM_001355067, intron 1 of 15)	25998.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	25.0	52.5	42.0	24.0	49.5	39.5
Merged-chr5-117414091-4	chr5	117413457	117414457	+	903.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001312914)	promoter-TSS (NM_001312914)	-45.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73817312-2	chr13	73816812	73817812	+	903.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011390)	TTS (NM_011390)	30319.0	NM_028186	72293.0	Mm.45506	NM_028186	ENSMUSG00000021567	Nkd2	2210403L10Rik|AW212591|mNkd2	naked cuticle 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46008359-2	chr19	46007859	46008859	+	903.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152221, intron 1 of 1)	intron (NR_152221, intron 1 of 1)	4881.0	NM_176785	20170.0	Mm.101110	NM_176785	ENSMUSG00000074811	Hps6	5330434M19Rik|BLOC2|ru	HPS6, biogenesis of lysosomal organelles complex 2 subunit 3	protein-coding	0.0	7.5	6.0	13.5	25.0	10.5
Merged-chr5-145117605-2	chr5	145117105	145118105	+	903.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023142, intron 1 of 9)	intron (NM_023142, intron 1 of 9)	3349.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7063819-2	chr10	7063319	7064319	+	903.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40634.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-13605463-3	chr6	13604973	13605973	+	903.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028990, intron 1 of 4)	intron (NM_028990, intron 1 of 4)	2625.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	5.5	5.0	12.0	0.0	10.0	10.0
Merged-chr11-115069460-2	chr11	115068960	115069960	+	903.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-7421.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46770116-4	chr8	46769611	46770611	+	903.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	30366.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-118464625-2	chr5	118464125	118465125	+	903.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96094.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61056001-2	chr9	61055501	61056501	+	903.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38932.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63092148-4	chr9	63091695	63092695	+	903.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54785.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165900803-2	chr2	165900267	165901267	+	903.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15929.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	39.5	47.0	47.5	25.5	40.0	51.0
Merged-chr1-59550462-2	chr1	59549962	59550962	+	903.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357842, intron 5 of 18)	intron (NM_001357842, intron 5 of 18)	26168.0	NM_001357842	381260.0	Mm.486706	NM_001013771	ENSMUSG00000047361	Gm973	AW554518	predicted gene 973	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59729744-2	chr15	59729244	59730244	+	903.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65215.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172505943-2	chr1	172505443	172506443	+	903.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178598, intron 3 of 4)	intron (NM_178598, intron 3 of 4)	5697.0	NM_178598	21346.0	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	3.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-85133686-2	chr10	85133186	85134186	+	903.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007771, intron 10 of 12)	B4A|SINE|B4	-5659.0	NM_028832	74238.0	Mm.255401	NM_028832	ENSMUSG00000049038	Mterf2	1700007D05Rik|Mterfd3	mitochondrial transcription termination factor 2	protein-coding	1.5	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136248311-4	chr5	136247808	136248808	+	903.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291240, exon 23 of 23)	3' UTR (NM_001291240, exon 23 of 23)	-3368.0	NM_018825	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	10.0	16.0	20.0	9.0	7.5	6.5
Merged-chr17-65607705-4	chr17	65607176	65608176	+	903.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355402, intron 1 of 6)	intron (NM_001355402, intron 1 of 6)	5879.0	NM_001355402	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21383687-4	chr5	21383191	21384191	+	903.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	11018.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50227291-4	chr11	50226753	50227753	+	903.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145926, intron 1 of 14)	intron (NM_145926, intron 1 of 14)	1918.0	NM_145926	103534.0	Mm.86759	NM_145926	ENSMUSG00000036620	Mgat4b	AA407995|GnTIVb	mannoside acetylglucosaminyltransferase 4, isoenzyme B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-58308957-4	chr14	58308427	58309427	+	903.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	236241.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	2.5	2.5	5.0	2.5	2.5	2.5
Merged-chr8-13640477-3	chr8	13639983	13640983	+	903.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	37104.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	4.5	3.5	2.0	14.5	4.5	3.0
Merged-chr11-85663622-3	chr11	85663129	85664129	+	903.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	56115.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-89282327-4	chr4	89281880	89282880	+	903.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040654)	promoter-TSS (NM_001040654)	-188.0	NM_001040654	12578.0	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin dependent kinase inhibitor 2A	protein-coding	0.0	0.0	0.5	6.5	0.0	12.0
Merged-chr13-110384718-4	chr13	110384189	110385189	+	903.429199	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-10355.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	3.0	0.5	0.5	3.0	0.0	0.5
Merged-chr12-70913589-4	chr12	70913089	70914089	+	903.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24268.0	NM_019785	56444.0	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58117841-4	chr13	58117349	58118349	+	903.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4202.0	NM_001362415	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	17.5	14.5	13.5	4.5	26.0	11.0
Merged-chr4-96553640-3	chr4	96553141	96554141	+	903.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010008)	promoter-TSS (NM_010008)	10.0	NM_010008	13110.0	Mm.98200	NM_010008	ENSMUSG00000052914	Cyp2j6	-	cytochrome P450, family 2, subfamily j, polypeptide 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122108287-4	chr5	122107777	122108777	+	903.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289809, intron 11 of 11)	intron (NM_001289809, intron 11 of 11)	7326.0	NM_010861	17906.0	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121545444-4	chr5	121544932	121545932	+	903.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010765, exon 1 of 14)	5' UTR (NM_010765, exon 1 of 14)	460.0	NM_010765	17165.0	Mm.272206	NM_010765	ENSMUSG00000029454	Mapkapk5	MK5|PRAK	MAP kinase-activated protein kinase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-135299198-3	chr6	135298681	135299681	+	903.4111330000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11203.0	NM_029595	76400.0	Mm.293018	NM_029595	ENSMUSG00000047104	Pbp2	1700023A18Rik|AI326308|Pebp-2|Pebp2	phosphatidylethanolamine binding protein 2	protein-coding	14.0	1.0	10.0	42.0	60.5	35.0
Merged-chr2-93333626-4	chr2	93333148	93334148	+	903.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183180, intron 1 of 9)	CpG	839.0	NM_183180	241556.0	Mm.274159	NM_183180	ENSMUSG00000027217	Tspan18	2610042G18Rik|6720430O15|BB226562	tetraspanin 18	protein-coding	0.0	0.5	0.0	0.0	0.0	3.5
Merged-chr10-95306552-3	chr10	95306059	95307059	+	903.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	17150.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78802985-4	chr15	78802473	78803473	+	903.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130859)	promoter-TSS (NM_130859)	69.0	NM_130859	105844.0	Mm.17629	NM_130859	ENSMUSG00000033170	Card10	AI449026|Bimp1|Carma3	caspase recruitment domain family, member 10	protein-coding	0.0	6.0	1.0	0.0	0.0	0.0
Merged-chr16-87441105-2	chr16	87440605	87441605	+	903.375	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016924)	promoter-TSS (NM_016924)	-513.0	NM_016924	53858.0	Mm.162406	NM_016924	ENSMUSG00000041079	Rwdd2b	ORF5	RWD domain containing 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113986033-4	chr5	113985544	113986544	+	903.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198109, intron 2 of 14)	intron (NM_198109, intron 2 of 14)	7713.0	NM_198109	231637.0	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot protein phosphatase 1	protein-coding	2.0	4.0	0.0	3.0	1.5	1.0
Merged-chr15-103502792-3	chr15	103502226	103503226	+	903.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008800)	promoter-TSS (NM_008800)	-308.0	NM_008800	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98489971-4	chr7	98489494	98490494	+	903.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4228.0	NM_001113379	434215.0	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97876264-4	chr3	97875769	97876769	+	903.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 1 of 46)	intron (NM_001039376, intron 1 of 46)	12438.0	NM_001289702	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33998799-5	chr17	33998267	33999267	+	903.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001892, intron 3 of 7)	intron (NM_001001892, intron 3 of 7)	1566.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	20.0	53.5	47.0	11.5	13.0	8.0
Merged-chr6-29902502-3	chr6	29902006	29903006	+	903.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347084, intron 13 of 17)	intron (NM_001347084, intron 13 of 17)	-14507.0	NM_177204	320609.0	Mm.56097	NM_177204	ENSMUSG00000039629	Strip2	D330017J20Rik|Fam40b	striatin interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87734880-4	chr17	87734392	87735392	+	903.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	62335.0	NM_008628	17685.0	Mm.4619	NM_008628	ENSMUSG00000024151	Msh2	AI788990	mutS homolog 2	protein-coding	5.5	5.5	8.0	10.0	0.0	2.0
Merged-chr5-32195564-3	chr5	32195005	32196005	+	903.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-37203.0	NM_030072	665270.0	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	5.5	28.5	10.5	12.0	34.5	8.0
Merged-chr12-12370124-2	chr12	12369624	12370624	+	903.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 11 of 11)	intron (NM_001146119, intron 11 of 11)	22351.0	NR_045829	70858.0	Mm.410838	NR_045829	ENSMUSG00000114136	4921511I17Rik	-	RIKEN cDNA 4921511I17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116669710-3	chr6	116669226	116670226	+	903.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178045, intron 1 of 10)	B4A|SINE|B4	4110.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57548116-3	chr16	57547602	57548602	+	903.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-1140.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-75259558-3	chr4	75259069	75260069	+	903.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18723.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-50674515-4	chr2	50674005	50675005	+	903.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER34A|LTR|ERV1	-235179.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-10920417-3	chr15	10919920	10920920	+	903.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31912.0	NM_030888	81799.0	Mm.280158	NM_030888	ENSMUSG00000058914	C1qtnf3	2310005P21Rik|CORS-26|CORS26|CTRP3|Corcs|Cors	C1q and tumor necrosis factor related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64296575-4	chr5	64296050	64297050	+	903.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 11 of 18)	intron (NM_001289514, intron 11 of 18)	66193.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	25.0	34.5	27.5	7.5	5.5	17.5
Merged-chr10-80904816-2	chr10	80904316	80905316	+	903.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347140, intron 3 of 8)	intron (NM_001347140, intron 3 of 8)	1596.0	NM_001347140	16907.0	Mm.7362	NM_010722	ENSMUSG00000062075	Lmnb2	-	lamin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108258092-3	chr3	108257594	108258594	+	903.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011967, intron 1 of 8)	intron (NM_011967, intron 1 of 8)	1168.0	NM_011967	26442.0	Mm.208883	NM_011967	ENSMUSG00000068749	Psma5	ZETA	proteasome (prosome, macropain) subunit, alpha type 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126536664-4	chr4	126536149	126537149	+	903.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-3191.0	NM_153177	76850.0	Mm.86705	NM_153177	ENSMUSG00000042500	Ago4	5730550L01Rik|AI481660|Eif2c4	argonaute RISC catalytic subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43558832-4	chr4	43558355	43559355	+	903.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011602, intron 1 of 56)	intron (NM_011602, intron 1 of 56)	3728.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113098087-4	chr12	113097545	113098545	+	903.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054081)	promoter-TSS (NM_054081)	-233.0	NM_001346696	116870.0	Mm.212577	NM_054081	ENSMUSG00000021144	Mta1	-	metastasis associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36730152-2	chr18	36729652	36730652	+	903.2999880000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-3337.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	6.0	8.0	0.5	2.5	1.0	2.5
Merged-chr13-41359561-4	chr13	41359064	41360064	+	903.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017464)	promoter-TSS (NM_017464)	-563.0	NM_017464	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147894100-4	chr5	147893540	147894540	+	903.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027872, exon 2 of 6)	5' UTR (NM_027872, exon 2 of 6)	775.0	NM_001357002	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50330412-4	chr17	50329910	50330910	+	903.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36790.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	1.0	2.5	16.0	6.0	39.0	13.0
Merged-chr1-181245203-4	chr1	181244697	181245697	+	903.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33219.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51524136-2	chr10	51523636	51524636	+	903.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR15|LTR|ERVK	33238.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-40947915-2	chr3	40947415	40948415	+	903.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2716.0	NM_001040399	214048.0	Mm.46782	NM_027663	ENSMUSG00000025762	Larp1b	1700108L22Rik|4933421B21Rik|AA690246|Larp2	La ribonucleoprotein domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106296935-4	chr9	106296428	106297428	+	903.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 7 of 10)	intron (NM_027354, intron 7 of 10)	15867.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	46.5	88.0	61.5	31.0	52.0	41.5
Merged-chr7-113308903-3	chr7	113308394	113309394	+	903.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357070, intron 18 of 19)	(TG)n|Simple_repeat|Simple_repeat	60445.0	NM_133700	68815.0	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	0.0	20.0	2.0	2.0	0.0	0.0
Merged-chr14-114946524-4	chr14	114946027	114947027	+	903.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126548)	promoter-TSS (NR_126548)	-579.0	NR_126548	74982.0		NR_126548	ENSMUSG00000115372	1700100I10Rik	1700085D13Rik|4930481K08Rik	RIKEN cDNA 1700100I10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74434769-4	chr17	74434246	74435246	+	903.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 7 of 8)	intron (NM_001033367, intron 7 of 8)	24362.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47512070-4	chr19	47511558	47512558	+	903.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045322)	promoter-TSS (NR_045322)	-924.0	NR_045322	100503104.0	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120202363-5	chr10	120201917	120202917	+	903.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028679)	promoter-TSS (NM_028679)	-287.0	NM_001359184	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-126928772-3	chr10	126928371	126929371	+	903.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27500.0	NM_001358970	68876.0	Mm.276769	NM_026858	ENSMUSG00000025436	Atp23	1110068E08Rik|2410012H02Rik|Xrcc6bp1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161295743-3	chr1	161295216	161296216	+	903.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44506.0	NM_001303408	11758.0	Mm.186185	NM_007453	ENSMUSG00000026701	Prdx6	1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2	peroxiredoxin 6	protein-coding	2.5	7.5	1.0	5.0	3.5	5.0
Merged-chr2-29655676-4	chr2	29655192	29656192	+	903.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	35972.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109026824-4	chr3	109026294	109027294	+	903.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163567, intron 1 of 10)	intron (NM_001163567, intron 1 of 10)	813.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	71.0	131.5	125.0	42.5	82.5	41.0
Merged-chr1-43903019-3	chr1	43902515	43903515	+	903.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30979.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-65562635-3	chr4	65562135	65563135	+	903.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207109, intron 17 of 22)	intron (NM_207109, intron 17 of 22)	-42351.0	NM_053084	69807.0	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120555062-4	chr11	120554557	120555557	+	903.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3925.0	NM_026814	68701.0	Mm.46477	NM_026814	ENSMUSG00000025129	Ppp1r27	1110033I14Rik|Dysfip1|toonin	protein phosphatase 1, regulatory subunit 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97076752-3	chr7	97076248	97077248	+	903.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5003.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34710477-4	chr13	34709981	34710981	+	903.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	-29161.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31428919-2	chr16	31428419	31429419	+	903.166626	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152205, exon 1 of 1)	non-coding (NR_152205, exon 1 of 1)	166.0	NM_001122683	71911.0	Mm.293470	NM_175177	ENSMUSG00000046598	Bdh1	2310032J20Rik|AI327223|Bdh	3-hydroxybutyrate dehydrogenase, type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-56059248-7	chr4	56058793	56059793	+	903.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-526818.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47437956-2	chr17	47437456	47438456	+	903.142822	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029296)	promoter-TSS (NM_029296)	-581.0	NM_029296	75462.0	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83312678-4	chr17	83312182	83313182	+	903.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38249.0	NM_001114361	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-94658426-4	chr1	94657882	94658882	+	903.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-139060.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34510813-4	chr1	34510313	34511313	+	903.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12401.0	NM_001360855	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87824624-4	chr1	87824125	87825125	+	903.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009118, intron 9 of 15)	intron (NM_009118, intron 9 of 15)	20945.0	NM_009118	20215.0	Mm.1276	NM_009118	ENSMUSG00000056055	Sag	A930001K18Rik|Arr1|Irbp|arrestin	S-antigen, retina and pineal gland (arrestin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34716699-3	chr6	34716204	34717204	+	903.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145575, intron 1 of 11)	intron (NM_145575, intron 1 of 11)	7260.0	NM_145575	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101914892-4	chr13	101914410	101915410	+	903.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-146693.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-66216120-4	chr17	66215635	66216635	+	903.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92615.0	NM_001348292	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117137349-4	chr4	117136841	117137841	+	903.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3378.0	NM_001313916	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	0.0	9.0	7.0	3.5	9.5	1.0
Merged-chr2-52931583-4	chr2	52931080	52932080	+	903.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	ORR1B2|LTR|ERVL-MaLR	73712.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24395065-3	chr7	24394477	24395477	+	903.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4651.0	NM_028047	71997.0	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	30.5	60.0	54.0	10.0	8.5	10.0
Merged-chr9-88720372-5	chr9	88719805	88720805	+	903.0399779999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001128601)	promoter-TSS (NM_001128601)	-507.0	NM_001128601	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20595622-3	chr10	20595078	20596078	+	903.0277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 2 of 12)	MER102b|DNA|hAT-Charlie	-47250.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83593647-4	chr11	83593147	83594147	+	903.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009139)	promoter-TSS (NM_009139)	-560.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76410498-4	chr16	76410019	76411019	+	903.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36692.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86787318-1	chr17	86786818	86787818	+	903.0	f0_balb.idr	intron (NM_010137, intron 1 of 15)	intron (NM_010137, intron 1 of 15)	33454.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	3.5	1.0	1.0	0.0	0.5	0.0
Merged-chr7-90128505-2	chr7	90128005	90129005	+	903.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_046006, intron 1 of 3)	intron (NR_046006, intron 1 of 3)	969.0	NR_046006	78329.0	Mm.389940	NR_046006	ENSMUSG00000097162	2310010J17Rik	-	RIKEN cDNA 2310010J17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55430453-4	chr1	55429959	55430959	+	903.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	24513.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	14.0	19.0	19.0	36.5	82.0	74.0
Merged-chr10-21566294-4	chr10	21565801	21566801	+	903.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26844.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	17.0	43.0	36.0	7.5	34.0	25.5
Merged-chr5-114926385-4	chr5	114925899	114926899	+	903.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359946, intron 1 of 4)	intron (NM_001359946, intron 1 of 4)	3159.0	NM_001359945	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	26.0	105.5	43.5	111.5	201.5	118.0
Merged-chr14-33246675-3	chr14	33246181	33247181	+	903.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	29858.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-48493936-3	chr9	48493442	48494442	+	903.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144948, intron 2 of 4)	ID_B1|SINE|B4	1388.0	NM_001326355	67010.0	Mm.76911	NM_144948	ENSMUSG00000042396	Rbm7	1200007M24Rik|1500011D06Rik|AU041934|AW554393	RNA binding motif protein 7	protein-coding	16.0	59.0	28.5	24.0	93.0	46.0
Merged-chr6-129396376-2	chr6	129395876	129396876	+	903.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204239)	promoter-TSS (NM_001204239)	-921.0	NM_001204253	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85262087-1	chr1	85261587	85262587	+	903.0	f1_balb.idr	intron (NM_175219, intron 1 of 7)	intron (NM_175219, intron 1 of 7)	8479.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59612515-3	chr2	59612089	59613089	+	903.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198294, intron 1 of 26)	CpG	547.0	NM_198294	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40276923-2	chr4	40276423	40277423	+	903.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033305, intron 2 of 3)	intron (NM_001033305, intron 2 of 3)	2498.0	NM_001033305	230075.0	Mm.1103	NM_001033305	ENSMUSG00000071014	Ndufb6	CI-B17|Gm137	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-66901896-2	chr10	66901396	66902396	+	903.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	18488.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-73956652-1	chr16	73956152	73957152	+	903.0	f0_balb.idr	exon (NM_001358492, exon 17 of 27)	exon (NM_001358492, exon 17 of 27)	385415.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.0	0.5	1.0	0.0	1.0	0.0
Merged-chr11-74546341-2	chr11	74545841	74546841	+	903.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	B3|SINE|B2	43817.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0.0	3.5	1.0	0.0	3.5	1.0
Merged-chr12-25283198-2	chr12	25282698	25283698	+	903.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	154024.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	15.0	18.5	17.5	28.5	25.0	13.0
Merged-chr1-44101643-3	chr1	44101151	44102151	+	903.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029368, intron 2 of 7)	intron (NM_029368, intron 2 of 7)	790.0	NM_029368	75623.0	Mm.348017	NM_029368	ENSMUSG00000026049	Tex30	1700029F09Rik|3110030D08Rik	testis expressed 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-68428569-3	chr15	68428076	68429076	+	903.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87287.0	NR_029718	387228.0		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	5.0	0.0	6.0	0.5	0.0	7.0
Merged-chr2-174453894-4	chr2	174453440	174454440	+	903.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080971, intron 1 of 3)	intron (NM_001080971, intron 1 of 3)	3345.0	NM_001080971	545486.0	Mm.45285	NM_001080971	ENSMUSG00000016255	Tubb1	2810484G07Rik|M(beta)1	tubulin, beta 1 class VI	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-35980800-1	chr4	35980300	35981300	+	903.0	f0_balb.idr	intron (NM_001166000, intron 7 of 8)	intron (NM_001166000, intron 7 of 8)	-135596.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84882659-2	chr3	84882159	84883159	+	903.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177773, intron 3 of 13)	intron (NM_001177773, intron 3 of 13)	18514.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	2.5	0.0	0.0	0.0	0.0	0.5
Merged-chr1-39925019-3	chr1	39924491	39925491	+	903.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 2 of 29)	MTC|LTR|ERVL-MaLR	24078.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57756880-4	chr6	57756378	57757378	+	903.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 4 of 4)	intron (NM_146168, intron 4 of 4)	54423.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-60870055-2	chr6	60869555	60870555	+	903.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40200.0	NM_009221	20617.0	Mm.17484	NM_009221	ENSMUSG00000025889	Snca	NACP|alpha-Syn|alphaSYN	synuclein, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13497339-4	chr10	13496842	13497842	+	903.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3686.0	NM_001330198	66848.0	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136465371-2	chr1	136464871	136465871	+	903.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2477.0	NM_001287179	381293.0	Mm.458468	NM_001081258	ENSMUSG00000041498	Kif14	D1Ertd367e|E130203M01	kinesin family member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13675807-3	chr8	13675372	13676372	+	903.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	1715.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55327389-2	chr13	55326889	55327889	+	903.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016662, intron 4 of 5)	intron (NM_016662, intron 4 of 5)	2341.0	NM_016662	17121.0	Mm.20350	NM_016662	ENSMUSG00000021485	Mxd3	4631412E13Rik|Mad3|bHLHc13	Max dimerization protein 3	protein-coding	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr3-22090037-3	chr3	22089560	22090560	+	903.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	13408.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43058017-1	chr17	43057517	43058517	+	903.0	f1_balb.idr	intron (NM_178589, intron 3 of 5)	intron (NM_178589, intron 3 of 5)	41462.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	115.5	194.5	177.5	233.5	417.5	324.5
Merged-chr9-118797129-2	chr9	118796629	118797629	+	903.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 3 of 13)	intron (NM_001113514, intron 3 of 13)	85437.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85086179-1	chr1	85085679	85086679	+	903.0	f1_balb.idr	Intergenic	Intergenic	23674.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155737433-2	chr1	155736953	155737953	+	903.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010712, intron 1 of 5)	CpG	4574.0	NM_010712	16872.0	Mm.103624	NM_010712	ENSMUSG00000026468	Lhx4	A330062J17Rik|Gsh-4|Gsh4	LIM homeobox protein 4	protein-coding	1.5	2.5	1.5	0.0	9.5	0.5
Merged-chr14-74734634-2	chr14	74734134	74735134	+	903.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285423, intron 1 of 8)	intron (NM_001285423, intron 1 of 8)	2337.0	NM_016903	13885.0	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-84086576-2	chr7	84086076	84087076	+	903.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030728)	promoter-TSS (NM_030728)	-71.0	NM_030728	80982.0	Mm.160389	NM_030728	ENSMUSG00000052353	Cemip	12H19.01.T7|6330404C01Rik|9930013L23Rik|AY007814|Kiaa1199	cell migration inducing protein, hyaluronan binding	protein-coding	1.0	0.0	0.0	1.0	0.0	3.0
Merged-chr18-65490043-3	chr18	65489568	65490568	+	903.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	59071.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.0	7.0	1.0	0.0	2.0	8.0
Merged-chr4-15257003-4	chr4	15256499	15257499	+	903.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8821.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103504602-4	chr2	103504094	103505094	+	903.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19441.0	NM_009804	12359.0	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	10.5	30.5	15.0	12.5	17.5	28.0
Merged-chr13-54592007-3	chr13	54591509	54592509	+	903.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347512)	TTS (NM_001347512)	1778.0	NM_025933	67044.0	Mm.29353	NM_025933	ENSMUSG00000025868	Higd2a	2010110M21Rik|AA690237	HIG1 domain family, member 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-85035615-2	chr2	85035115	85036115	+	903.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145526, exon 1 of 12)	5' UTR (NM_145526, exon 1 of 12)	219.0	NM_145526	228139.0	Mm.440375	NM_145526	ENSMUSG00000027071	P2rx3	4930513E20Rik|P2X3	purinergic receptor P2X, ligand-gated ion channel, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-49627188-4	chr4	49626688	49627688	+	902.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4872.0	NM_001163263	109331.0	Mm.24765	NM_182999	ENSMUSG00000028309	Rnf20	4833430L21Rik|AW540162|C79397|mKIAA4116	ring finger protein 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-28420991-4	chr6	28420492	28421492	+	902.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028900, exon 1 of 2)	exon (NM_028900, exon 1 of 2)	732.0	NM_028900	74375.0	Mm.332950	NM_028900	ENSMUSG00000029708	Gcc1	4932417P04Rik	golgi coiled coil 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56727426-3	chr18	56726919	56727919	+	902.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010721, intron 1 of 10)	intron (NM_010721, intron 1 of 10)	19606.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117145825-8	chr10	117145360	117146360	+	902.9345089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177798, intron 1 of 9)	intron (NM_177798, intron 1 of 9)	2614.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-96794446-4	chr5	96793942	96794942	+	902.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013470, intron 1 of 12)	intron (NM_013470, intron 1 of 12)	1057.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	19.5	39.5	40.5	7.0	54.0	35.5
Merged-chr13-41601872-4	chr13	41601362	41602362	+	902.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-4354.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57570594-4	chr6	57570096	57571096	+	902.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10396.0	NM_025992	67138.0	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11712918-4	chr2	11712411	11713411	+	902.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271499, intron 1 of 6)	intron (NM_001271499, intron 1 of 6)	7199.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-61812004-4	chr2	61811487	61812487	+	902.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009322, exon 6 of 6)	exon (NM_009322, exon 6 of 6)	7534.0	NM_009322	21375.0	Mm.308525	NM_009322	ENSMUSG00000035033	Tbr1	-	T-box brain gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98963862-3	chr11	98963352	98964352	+	902.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001176528, intron 1 of 7)	intron (NM_001176528, intron 1 of 7)	-1020.0	NM_001361954	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70915360-4	chr12	70914868	70915868	+	902.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-22489.0	NM_019785	56444.0	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30760916-4	chr7	30760411	30761411	+	902.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-2845.0	NM_001166173	73712.0	Mm.30138	NM_028618	ENSMUSG00000060962	Dmkn	1110014F24Rik|AW561900|C130074A08|SK30|SK89|cI-36	dermokine	protein-coding	0.5	5.5	3.0	0.0	0.0	1.5
Merged-chr8-47872713-4	chr8	47872407	47873407	+	902.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133791, intron 9 of 22)	intron (NM_133791, intron 9 of 22)	48425.0	NM_029383	75677.0	Mm.390033	NM_029383	ENSMUSG00000038064	Cldn22	2210404A22Rik|5330431C14Rik|9530051B05Rik	claudin 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72188308-4	chr5	72187808	72188808	+	902.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15021.0	NR_003966	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40807039-4	chr9	40806543	40807543	+	902.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5770.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	108.0	331.5	168.0	96.0	244.0	141.0
Merged-chr5-135571555-6	chr5	135571125	135572125	+	902.89447	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356630, intron 2 of 3)	intron (NM_001356630, intron 2 of 3)	1424.0	NM_019577	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	11.0	2.0	6.0	36.0	49.0	22.5
Merged-chr9-44477904-4	chr9	44477374	44478374	+	902.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4951.0	NM_001357490	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	7.0	25.5	7.5	2.5	4.0	10.5
Merged-chr7-31155558-4	chr7	31155056	31156056	+	902.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4385.0	NR_153431	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166728435-4	chr2	166727941	166728941	+	902.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	-14609.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	3.0	3.0	2.5	0.0	3.0	5.5
Merged-chr2-159992446-4	chr2	159991956	159992956	+	902.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24197.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	10.5	7.0	12.5	2.0	13.0	1.5
Merged-chr16-17803071-5	chr16	17802639	17803639	+	902.8666380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153790, exon 4 of 11)	exon (NM_153790, exon 4 of 11)	5857.0	NM_153790	224024.0	Mm.194950	NM_153790	ENSMUSG00000012017	Scarf2	NSR1|SREC-II|SRECRP-1|Scatf1|Srec2|SrecII	scavenger receptor class F, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25115142-2	chr17	25114643	25115643	+	902.845215	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163661, exon 2 of 21)	exon (NM_001163661, exon 2 of 21)	762.0	NM_027880	71718.0	Mm.288702	NM_027880	ENSMUSG00000024170	Telo2	1200003M09Rik|AI415602|Tel2|mKIAA0683	telomere maintenance 2	protein-coding	29.5	85.0	94.5	50.0	94.5	76.5
Merged-chr11-22759899-4	chr11	22759393	22760393	+	902.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99842.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27325909-4	chr7	27325410	27326410	+	902.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113549, intron 11 of 29)	intron (NM_001113549, intron 11 of 29)	7738.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89173468-2	chr15	89172968	89173968	+	902.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_138749, intron 1 of 37)	CpG	483.0	NM_001159521	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-81613458-2	chr11	81612958	81613958	+	902.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034013, intron 1 of 9)	intron (NM_001034013, intron 1 of 9)	-39919.0	NM_001033765	237880.0	Mm.435528	NM_001033765		1700071K01Rik	-	RIKEN cDNA 1700071K01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-16553927-1	chr5	16553427	16554427	+	902.8333130000001	f0_balb.idr	promoter-TSS (NM_001289461)	promoter-TSS (NM_001289461)	26.0	NM_001289461	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84318789-4	chr1	84318298	84319298	+	902.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34153.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-100456491-4	chr9	100455982	100456982	+	902.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	29991.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	33.5	45.0	54.5	37.5	136.0	85.0
Merged-chr19-47137934-3	chr19	47137429	47138429	+	902.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_133746, exon 1 of 3)	5' UTR (NM_133746, exon 1 of 3)	365.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	0.0	8.5	3.5	0.0	8.5	1.5
Merged-chr10-128910335-3	chr10	128909829	128910829	+	902.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007653, intron 1 of 7)	CpG	463.0	NM_007653	12512.0	Mm.371552	NM_007653	ENSMUSG00000025351	Cd63	C75951|ME491|Tspan30	CD63 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24608211-3	chr13	24607718	24608718	+	902.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286100, intron 1 of 22)	intron (NM_001286100, intron 1 of 22)	-3451.0	NR_024599	76024.0	Mm.440710	NR_024599		Gm11346	5830431A10Rik|AI447617|Gm11347	X-linked lymphocyte-regulated 5 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131525303-4	chr1	131524825	131525825	+	902.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081011, exon 2 of 23)	5' UTR (NM_001081011, exon 2 of 23)	2036.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131472291-2	chr1	131471791	131472791	+	902.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	GA-rich|Low_complexity|Low_complexity	55070.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-67363892-4	chr1	67363377	67364377	+	902.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	240850.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135546673-2	chr5	135546173	135547173	+	902.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-1551.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32985220-4	chr19	32984744	32985744	+	902.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-171868.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-83713918-4	chr18	83713363	83714363	+	902.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	372699.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67532535-4	chr5	67532042	67533042	+	902.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68644.0	NR_015582	320479.0	Mm.387187	NR_015582	ENSMUSG00000107385	C330024D21Rik	-	RIKEN cDNA C330024D21 gene	ncRNA	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr15-76825720-4	chr15	76825237	76826237	+	902.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-7567.0	NM_198420	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30393264-5	chr7	30392724	30393724	+	902.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-20564.0	NM_011662	22177.0	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	113.0	258.5	157.5	40.5	104.0	81.0
Merged-chr4-102565887-3	chr4	102565448	102566448	+	902.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-4112.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	1.0	4.5	1.5	5.0	5.0	2.0
Merged-chr11-69849403-4	chr11	69848923	69849923	+	902.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168497, intron 6 of 7)	intron (NM_001168497, intron 6 of 7)	2779.0	NR_033133	70310.0	Mm.28874	NM_023564	ENSMUSG00000019461	Plscr3	2210403O21Rik|2610037N06Rik|ESTM3|X83310	phospholipid scramblase 3	protein-coding	2.0	16.5	21.5	31.0	63.5	42.0
Merged-chr4-32280558-4	chr4	32280083	32281083	+	902.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-136852.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	14.0	20.0	6.5	11.0	14.5	5.0
Merged-chr6-134245855-4	chr6	134245334	134246334	+	902.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 5 of 8)	L1MEf|LINE|L1	-150495.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	13.5	33.5	27.0	32.5	59.0	37.0
Merged-chr15-100664106-4	chr15	100663616	100664616	+	902.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270537, intron 1 of 10)	intron (NM_001270537, intron 1 of 10)	5384.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	15.5	7.5	12.0	36.0	17.5	21.0
Merged-chr8-83310055-3	chr8	83309505	83310505	+	902.677795	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19657.0	NM_009463	22227.0	Mm.4177	NM_009463	ENSMUSG00000031710	Ucp1	AI385626|Slc25a7|Ucp	uncoupling protein 1 (mitochondrial, proton carrier)	protein-coding	0.0	0.0	0.5	0.0	0.5	1.0
Merged-chr11-65784557-4	chr11	65784046	65785046	+	902.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316368, intron 1 of 10)	intron (NM_001316368, intron 1 of 10)	3813.0	NM_009157	26398.0	Mm.412922	NM_009157	ENSMUSG00000033352	Map2k4	JNKK1|MEK4|MKK4|PRKMK4|Sek1|Serk1	mitogen-activated protein kinase kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95688094-2	chr11	95687594	95688594	+	902.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21137.0	NM_008831	18673.0	Mm.263862	NM_008831	ENSMUSG00000038845	Phb	Bap32	prohibitin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73562318-2	chr15	73561818	73562818	+	902.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NR_152151, intron 16 of 23)	intron (NR_152151, intron 16 of 23)	34208.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-82831996-3	chr1	82831501	82832501	+	902.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7459.0	NM_010472	15463.0	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142389444-3	chr7	142388928	142389928	+	902.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1558.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	17.0	25.5	9.5	3.5	23.0	28.0
Merged-chr11-59230477-4	chr11	59229962	59230962	+	902.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2195.0	NM_007476	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	1.5	8.5	4.5	0.5	1.5	1.0
Merged-chr10-30718313-4	chr10	30717825	30718825	+	902.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 3 of 14)	intron (NM_001358842, intron 3 of 14)	-62458.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27209168-4	chr7	27208758	27209758	+	902.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181593, intron 6 of 6)	MIR3|SINE|MIR	3722.0	NR_035422	100316839.0		NR_035422	ENSMUSG00000080533	Mir1191	Mirn1191|mmu-mir-1191|mmu-mir-1191a	microRNA 1191	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73505870-3	chr13	73505373	73506373	+	902.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145376, intron 9 of 13)	intron (NM_145376, intron 9 of 13)	-30874.0	NM_010020	13162.0	Mm.41993	NM_010020	ENSMUSG00000021609	Slc6a3	DAT|Dat1	solute carrier family 6 (neurotransmitter transporter, dopamine), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-172396044-2	chr2	172395544	172396544	+	902.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080820, intron 1 of 6)	intron (NM_001080820, intron 1 of 6)	2250.0	NM_001276423	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19587849-4	chr10	19587344	19588344	+	902.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-4105.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	6.0	17.5	15.5	9.5	26.5	19.5
Merged-chr11-74532557-3	chr11	74532057	74533057	+	902.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	57601.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0.0	1.5	2.0	1.0	2.0	5.5
Merged-chr4-106980744-3	chr4	106980277	106981277	+	902.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355532, intron 1 of 14)	intron (NM_001355532, intron 1 of 14)	57592.0	NM_001355532	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	15.5	24.0	15.5	27.5	8.5	16.0
Merged-chr8-126495514-2	chr8	126495014	126496014	+	902.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-20449.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108186559-4	chr3	108186096	108187096	+	902.662476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001287093, exon 1 of 3)	5' UTR (NM_001287093, exon 1 of 3)	307.0	NM_146137	229715.0	Mm.275752	NM_146137	ENSMUSG00000050947	Amigo1	Amigo|ali2	adhesion molecule with Ig like domain 1	protein-coding	3.0	3.5	1.0	1.5	2.5	0.0
Merged-chr1-144312778-4	chr1	144312296	144313296	+	902.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-63692.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36071384-4	chr1	36070881	36071881	+	902.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	2981.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33186298-4	chr16	33185788	33186788	+	902.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176840, intron 1 of 12)	intron (NM_176840, intron 1 of 12)	1217.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36345477-3	chr18	36344946	36345946	+	902.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-3178.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-47277915-3	chr13	47277353	47278353	+	902.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83850.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	12.5	15.5	18.5	4.0	17.5	18.0
Merged-chr4-82619747-3	chr4	82619255	82620255	+	902.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111766.0	NR_137202	102635783.0	Mm.41666	NR_137202		Gm11266	-	predicted gene 11266	ncRNA	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr10-130314296-4	chr10	130313772	130314772	+	902.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8580.0	NM_183264	67596.0	Mm.131264	NM_183264	ENSMUSG00000034833	Tespa1	5830405N20Rik|A430001F24Rik|AI450549	thymocyte expressed, positive selection associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-33101522-4	chr19	33101008	33102008	+	902.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55604.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-106829797-4	chr13	106829295	106830295	+	902.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360897, intron 28 of 30)	intron (NM_001360897, intron 28 of 30)	107163.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	2.0	1.5	2.0	4.5	0.0	1.5
Merged-chr9-7869407-4	chr9	7868869	7869869	+	902.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007464, intron 1 of 8)	intron (NM_007464, intron 1 of 8)	3801.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54835196-4	chr12	54834683	54835683	+	902.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27694.0	NM_007688	12632.0	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	0.0	1.0	3.0	0.0	0.0	0.0
Merged-chr16-38095658-4	chr16	38095073	38096073	+	902.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 1 of 11)	B2_Mm2|SINE|B2	-6313.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	3.5	5.5	1.0	3.5	3.0	8.0
Merged-chr6-123095470-8	chr6	123094966	123095966	+	902.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27224.0	NM_001170332	26888.0	Mm.47384	NM_011999	ENSMUSG00000030148	Clec4a2	Clec4a|Clecsf6|DCIR|Dcir1	C-type lectin domain family 4, member a2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57331677-3	chr17	57331113	57332113	+	902.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27073.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99365134-3	chr15	99364633	99365633	+	902.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310622, intron 1 of 25)	intron (NM_001310622, intron 1 of 25)	5349.0	NM_001310623	22379.0	Mm.29043	NM_011711	ENSMUSG00000023008	Fmnl3	2700073B04Rik|FBP11|Wbp3|mKIAA2014	formin-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111039168-4	chr9	111038684	111039684	+	902.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008522, intron 15 of 16)	intron (NM_008522, intron 15 of 16)	18060.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-55612382-4	chr3	55611905	55612905	+	902.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150677.0	NM_001357476	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148419299-2	chr5	148418799	148419799	+	902.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19395.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-105830605-2	chr12	105830105	105831105	+	902.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347440, intron 19 of 20)	B1F2|SINE|Alu	45908.0	NM_001347440	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	10.0	4.5	12.0	0.5	4.0	3.5
Merged-chr18-65803588-2	chr18	65803088	65804088	+	902.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025468, intron 1 of 5)	(T)n|Simple_repeat|Simple_repeat	3010.0	NM_025468	66286.0	Mm.27800	NM_025468	ENSMUSG00000024516	Sec11c	1810029G24Rik|Sec11l3	SEC11 homolog C, signal peptidase complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77910876-2	chr10	77910376	77911376	+	902.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 33 of 33)	MTE2b|LTR|ERVL-MaLR	-8340.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118637634-3	chr7	118637116	118638116	+	902.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028930, intron 1 of 17)	ORR1D2|LTR|ERVL-MaLR	3880.0	NM_028930	74424.0	Mm.11068	NM_028930	ENSMUSG00000030650	Tmc5	4932443L08Rik|AU016085	transmembrane channel-like gene family 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72296753-2	chr8	72296243	72297243	+	902.5	f0_balb.idr|f1_balb.idr	Intergenic	PB1D9|SINE|Alu	-22319.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	154.5	513.5	368.5	182.0	431.0	312.5
Merged-chr6-124848465-2	chr6	124847965	124848965	+	902.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013534, intron 9 of 14)	CT-rich|Low_complexity|Low_complexity	-8190.0	NM_013530	14695.0	Mm.68889	NM_013530	ENSMUSG00000023439	Gnb3	Gnb-3	guanine nucleotide binding protein (G protein), beta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122658482-4	chr6	122657998	122658998	+	902.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32074.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30389337-4	chr16	30388849	30389849	+	902.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001128094)	promoter-TSS (NM_001128094)	-819.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	80.0	145.0	120.0	76.0	161.5	121.5
Merged-chr15-79670385-2	chr15	79669885	79670885	+	902.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172609)	promoter-TSS (NM_172609)	-483.0	NM_172609	223696.0	Mm.246435	NM_172609	ENSMUSG00000022427	Tomm22	2310047D01|Tom22	translocase of outer mitochondrial membrane 22	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr7-127778301-2	chr7	127777801	127778801	+	902.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178029, intron 2 of 18)	intron (NM_178029, intron 2 of 18)	912.0	NM_178029	233904.0	Mm.435494	NM_010940	ENSMUSG00000042308	Setd1a	BC010250|KMT2F|Nsccn1|mKIAA0339|mNSC1	SET domain containing 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117358459-2	chr5	117357959	117358959	+	902.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021539, intron 1 of 8)	intron (NM_021539, intron 1 of 8)	1154.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	12.0	35.5	46.0	15.0	33.5	41.0
Merged-chr5-31221323-2	chr5	31220823	31221823	+	902.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008014)	promoter-TSS (NM_008014)	-778.0	NM_008014	14208.0	Mm.14501	NM_008014	ENSMUSG00000029147	Ppm1g	AI385652|Fin13	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83158686-2	chr15	83158186	83159186	+	902.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029787, intron 8 of 8)	MIRb|SINE|MIR	9041.0	NR_004432	104307.0	Mm.471434	NR_004432	ENSMUSG00000065176	Rnu12	-	RNA U12, small nuclear	snRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45744575-4	chr7	45744071	45745071	+	902.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017465, intron 1 of 6)	intron (NM_017465, intron 1 of 6)	-2093.0	NM_001360784	54200.0	Mm.271634	NM_017465	ENSMUSG00000003271	Sult2b1	AI326997|BB173635|ST2B1|SULT2B	sulfotransferase family, cytosolic, 2B, member 1	protein-coding	0.5	1.5	0.0	0.0	2.0	3.0
Merged-chr5-143056269-2	chr5	143055769	143056769	+	902.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	56751.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108923287-4	chr3	108922809	108923809	+	902.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11580.0	NM_001356292	66921.0	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	0.0	5.5	0.5	0.0	1.5	0.5
Merged-chr11-113748892-2	chr11	113748392	113749392	+	902.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163346, intron 1 of 1)	intron (NM_001163346, intron 1 of 1)	2268.0	NM_020006	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70786724-2	chr11	70786224	70787224	+	902.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	22277.0	NM_177565	193043.0	Mm.40966	NM_177565	ENSMUSG00000043602	Zfp3	AI854635|B230309J24|Fnp-1|Zfp-3	zinc finger protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25270060-2	chr17	25269560	25270560	+	902.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011665, intron 1 of 6)	intron (NM_011665, intron 1 of 6)	3371.0	NM_001177610	22196.0	Mm.240044	NM_011665	ENSMUSG00000015120	Ube2i	5830467E05Rik|UBC9|Ubce2i|Ubce9	ubiquitin-conjugating enzyme E2I	protein-coding	5.5	13.0	1.5	0.0	0.5	0.0
Merged-chr2-16184138-2	chr2	16183638	16184638	+	902.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310455, intron 35 of 38)	MTD|LTR|ERVL-MaLR	-172166.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-42187249-3	chr12	42186738	42187738	+	902.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	-701181.0	NM_010733	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-111097306-2	chr11	111096806	111097806	+	902.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31142.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	80.5	88.0	64.5	44.0	66.5	70.0
Merged-chr6-117921495-4	chr6	117920986	117921986	+	902.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166429, intron 3 of 3)	MER20|DNA|hAT-Charlie	4192.0	NM_001166427	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139289990-2	chr4	139289490	139290490	+	902.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 9 of 9)	intron (NM_001037761, intron 9 of 9)	20718.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	0.0	2.0	1.0	1.0	2.0	2.5
Merged-chr10-75772848-4	chr10	75772375	75773375	+	902.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010027, exon 2 of 3)	exon (NM_010027, exon 2 of 3)	499.0	NM_010027	13202.0	Mm.298947	NM_010027	ENSMUSG00000001666	Ddt	C78655	D-dopachrome tautomerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98356710-2	chr7	98356210	98357210	+	902.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168541, intron 2 of 3)	intron (NM_001168541, intron 2 of 3)	4578.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33909197-3	chr2	33908696	33909696	+	902.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-21250.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19451189-1	chr3	19450689	19451689	+	902.5	f0_balb.idr	Intergenic	Intergenic	-57406.0	NM_001163536	66326.0	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	9.5	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125145845-5	chr6	125145376	125146376	+	902.466675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001302779, exon 1 of 9)	exon (NM_001302779, exon 1 of 9)	652.0	NM_001302779	320678.0	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	0.0	1.0	7.0	0.0	0.0	0.0
Merged-chr5-147418569-4	chr5	147418077	147419077	+	902.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033625)	promoter-TSS (NR_033625)	-43.0	NR_033625	100039805.0	Mm.394705	NR_033625	ENSMUSG00000106820	D5Ertd605e	Gm2433	DNA segment, Chr 5, ERATO Doi 605, expressed	ncRNA	14.0	38.5	12.5	30.0	16.5	32.5
Merged-chr8-3665680-4	chr8	3665176	3666176	+	902.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026985)	promoter-TSS (NM_026985)	-86.0	NM_026985	69189.0	Mm.175176	NM_026985	ENSMUSG00000013974	Mcemp1	1810033B17Rik	mast cell expressed membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30123462-4	chr16	30122964	30123964	+	902.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME2|LINE|L1	58107.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78898978-4	chr15	78898382	78899382	+	902.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316686)	promoter-TSS (NM_001316686)	-886.0	NR_133564	20401.0	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	10.5	41.0	24.5	18.5	17.5	33.5
Merged-chr5-114826404-4	chr5	114825898	114826898	+	902.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2930.0	NM_181075	330173.0	Mm.482205	NM_181075	ENSMUSG00000092486	2610524H06Rik	-	RIKEN cDNA 2610524H06 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122104638-3	chr3	122104144	122105144	+	902.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007378, intron 13 of 49)	intron (NM_007378, intron 13 of 49)	60184.0	NM_007378	11304.0	Mm.3918	NM_007378	ENSMUSG00000028125	Abca4	AW050280|Abc10|Abcr|D430003I15Rik|RmP	ATP-binding cassette, sub-family A (ABC1), member 4	protein-coding	3.0	0.0	1.0	0.0	0.0	0.0
Merged-chr16-28914384-3	chr16	28913901	28914901	+	902.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177718, intron 1 of 1)	intron (NM_177718, intron 1 of 1)	15297.0	NM_177718	239796.0	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding	13.0	62.0	22.5	4.5	14.0	4.5
Merged-chr16-32607766-3	chr16	32607267	32608267	+	902.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-1129.0	NM_011638	22042.0	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109380852-4	chr11	109380341	109381341	+	902.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001359034)	TTS (NM_001359034)	-17187.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86758776-4	chr11	86758234	86759234	+	902.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1167.0	NM_001356393	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-24510674-4	chr9	24510175	24511175	+	902.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7535.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92880911-2	chr16	92880411	92881411	+	902.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54837.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46546356-4	chr17	46545855	46546855	+	902.408325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081335)	promoter-TSS (NM_001081335)	33.0	NM_001081335	78309.0	Mm.329076	NM_001081335	ENSMUSG00000040327	Cul9	1810035I07Rik|Cul-9|Parc|mKIAA0708	cullin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-44662156-3	chr18	44661631	44662631	+	902.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_026853, exon 1 of 5)	non-coding (NR_026853, exon 1 of 5)	135.0	NM_001085374	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr9-83576910-3	chr9	83576441	83577441	+	902.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	28603.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	1.0	1.0	2.0	4.0	10.5	12.5
Merged-chr6-51171079-4	chr6	51170576	51171576	+	902.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98834.0	NR_029719	387166.0		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4893677-4	chr16	4893156	4894156	+	902.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 1 of 17)	intron (NM_001357062, intron 1 of 17)	7556.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-34096551-3	chr15	34096064	34097064	+	902.3666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357925, intron 1 of 10)	intron (NM_001357925, intron 1 of 10)	13845.0	NM_001357925	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	2.5	6.0	18.0	2.5	4.0	16.5
Merged-chr16-92423594-4	chr16	92423093	92424093	+	902.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-23515.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35868365-4	chr17	35867851	35868851	+	902.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175242, exon 1 of 3)	exon (NM_175242, exon 1 of 3)	1736.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	4.0	19.5	6.0	16.0	23.0	11.5
Merged-chr17-6078562-2	chr17	6078062	6079062	+	902.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360148, intron 1 of 15)	intron (NM_001360148, intron 1 of 15)	1177.0	NM_001111017	321007.0	Mm.5548	NM_177311	ENSMUSG00000015659	Serac1	4930511N22Rik|D17Ertd141e	serine active site containing 1	protein-coding	0.0	1.5	4.0	0.0	1.5	5.0
Merged-chr17-87247675-2	chr17	87247176	87248176	+	902.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18271.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	59.0	146.5	112.5	73.5	152.0	115.5
Merged-chr13-37515134-2	chr13	37514635	37515635	+	902.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57C2|LTR|ERV1	169790.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	4.5	19.0	29.0	6.0	16.5	6.5
Merged-chr11-4237666-1	chr11	4237166	4238166	+	902.3333130000001	f0_balb.idr	intron (NM_001013365, intron 1 of 2)	intron (NM_001013365, intron 1 of 2)	881.0	NM_001013365	18413.0	Mm.131422	NM_001013365	ENSMUSG00000058755	Osm	OncoM	oncostatin M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97972017-3	chr6	97971516	97972516	+	902.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001178049, intron 2 of 9)	B4A|SINE|B4	-19767.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	3.5	0.0	5.0	2.5	1.0	1.0
Merged-chr10-20763423-3	chr10	20762925	20763925	+	902.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38347.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-28412199-3	chr15	28411719	28412719	+	902.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133365, intron 65 of 78)	B3|SINE|B2	208453.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90216022-2	chr3	90215522	90216522	+	902.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293741, intron 1 of 7)	B2_Mm2|SINE|B2	2307.0	NM_001293741	68328.0	Mm.29355	NM_026677	ENSMUSG00000027935	Rab13	0610007N03Rik|B230212B15Rik	RAB13, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87007902-3	chr1	87007398	87008398	+	902.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172157, intron 14 of 21)	MIR|SINE|MIR	82030.0	NM_007433	11650.0	Mm.195224	NM_007433	ENSMUSG00000026246	Alppl2	Akp5|C77216|D1Ertd816e|EAP	alkaline phosphatase, placental-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86788520-3	chr17	86788028	86789028	+	902.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010137, intron 1 of 15)	intron (NM_010137, intron 1 of 15)	34664.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.0	0.0	1.0	1.5	0.0	0.0
Merged-chr6-49269401-4	chr6	49268900	49269900	+	902.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5348.0	NM_001362188	101214.0	Mm.196598	NM_198102	ENSMUSG00000029817	Tra2a	1500010G04Rik|AL022798|G430041M01Rik|mAWMS1	transformer 2 alpha	protein-coding	1.0	2.5	0.0	0.5	0.0	1.0
Merged-chr10-78295298-3	chr10	78294753	78295753	+	902.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053014, intron 2 of 9)	intron (NM_053014, intron 2 of 9)	44954.0	NR_106119	102465765.0		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-26639422-4	chr14	26638935	26639935	+	902.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007479, intron 1 of 5)	intron (NM_007479, intron 1 of 5)	1301.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-113793324-4	chr9	113792865	113793865	+	902.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286603)	promoter-TSS (NM_001286603)	35.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-77300687-4	chr16	77300191	77301191	+	902.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28637.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-41582539-4	chr3	41582045	41583045	+	902.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130184, intron 2 of 10)	intron (NM_001130184, intron 2 of 10)	17665.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	2.5	0.0	4.0	1.0	0.0	1.0
Merged-chr9-13581445-3	chr9	13581002	13582002	+	902.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-38487.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	5.0	6.0	6.5	1.0	6.5	16.0
Merged-chr3-51415377-4	chr3	51414904	51415904	+	902.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053089)	promoter-TSS (NM_053089)	-612.0	NM_053089	74838.0	Mm.275281	NM_053089	ENSMUSG00000063273	Naa15	5730450D16Rik|6330400I15|ASTBDN|Narg1|Tbdn-1|mNAT1	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71093301-4	chr17	71092787	71093787	+	902.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083934, intron 21 of 36)	intron (NM_001083934, intron 21 of 36)	73730.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78080860-4	chr11	78080365	78081365	+	902.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022313)	promoter-TSS (NM_022313)	-482.0	NM_022313	57837.0	Mm.21096	NM_022313	ENSMUSG00000020832	Eral1	2610524P08Rik|9130407C09Rik|AU019798|Era|M-ERA|MERA-S|MERA-W	Era (G-protein)-like 1 (E. coli)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122682320-3	chr10	122681814	122682814	+	902.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	2999.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	13.0	30.0	12.5	11.5	33.0	24.5
Merged-chr15-12380739-4	chr15	12380239	12381239	+	902.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081064, intron 18 of 23)	intron (NM_001081064, intron 18 of 23)	59243.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126051801-4	chr4	126051317	126052317	+	902.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025544, intron 5 of 7)	intron (NM_025544, intron 5 of 7)	4889.0	NM_025544	66407.0	Mm.195628	NM_025544	ENSMUSG00000028861	Mrps15	1500003E24Rik|2410002B11Rik|Mprs15	mitochondrial ribosomal protein S15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98514994-4	chr10	98514501	98515501	+	902.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-163134.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92485067-4	chr5	92484570	92485570	+	902.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 2 of 11)	intron (NM_007644, intron 2 of 11)	20587.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8424416-4	chr11	8423882	8424882	+	902.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	240153.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.5	6.5	3.5	3.5	0.0	2.0
Merged-chr6-129181834-4	chr6	129181325	129182325	+	902.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053109, intron 1 of 4)	intron (NM_053109, intron 1 of 4)	1210.0	NM_053109	93694.0	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	8.0	15.0	8.5	11.0	13.0	9.5
Merged-chr19-42166357-3	chr19	42165846	42166846	+	902.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4221.0	NM_177319	319740.0	Mm.287359	NM_177319	ENSMUSG00000018820	Zfyve27	2210011N02Rik|9530077C24Rik|AI426636|AI593546|AI835681	zinc finger, FYVE domain containing 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120578902-3	chr5	120578387	120579387	+	902.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145853, intron 2 of 27)	intron (NM_145853, intron 2 of 27)	9726.0	NM_145853	252972.0	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64082413-3	chr15	64081900	64082900	+	902.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID|SINE|ID	-21952.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	9.0	19.0	26.5	14.0	36.5	24.5
Merged-chr3-107939607-4	chr3	107939084	107940084	+	902.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008184, intron 7 of 7)	intron (NM_008184, intron 7 of 7)	4165.0	NM_008184	14867.0	Mm.458154	NM_008184	ENSMUSG00000068762	Gstm6	-	glutathione S-transferase, mu 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20798946-4	chr14	20798452	20799452	+	902.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4713.0	NR_153779	102631887.0	Mm.122292	NR_153779	ENSMUSG00000114241	Gm30108	-	predicted gene, 30108	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40626269-4	chr19	40625769	40626769	+	902.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	L1MA4|LINE|L1	13903.0	NM_001304721	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113398183-3	chr5	113397669	113398669	+	902.1889039999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40875.0	NM_001012726	503692.0	Mm.348794	NM_001012726	ENSMUSG00000053873	Aym1	-	activator of yeast meiotic promoters 1	protein-coding	2.0	0.0	0.0	2.0	0.0	0.0
Merged-chr5-125313488-3	chr5	125313024	125314024	+	902.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	MTEb|LTR|ERVL-MaLR	27570.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	26.5	58.0	30.0	40.5	45.0	35.0
Merged-chr2-33887257-4	chr2	33886752	33887752	+	902.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 1 of 9)	CpG	694.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81287813-3	chr10	81287272	81288272	+	902.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282095, intron 1 of 20)	RSINE1|SINE|B4	-1991.0	NM_001282096	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-164066884-4	chr1	164066385	164067385	+	902.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164059, intron 4 of 7)	intron (NM_001164059, intron 4 of 7)	4809.0	NM_011346	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132347813-4	chr7	132347284	132348284	+	902.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30556.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88228514-6	chr1	88228115	88229115	+	902.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 3 of 41)	intron (NM_001281466, intron 3 of 41)	1595.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24474101-3	chr7	24473599	24474599	+	902.166626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011113, intron 5 of 6)	intron (NM_011113, intron 5 of 6)	-7924.0	NM_153112	260299.0	Mm.178322	NM_153112	ENSMUSG00000054793	Cadm4	Igdf4c|Igsf4c|Tsll2	cell adhesion molecule 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-76973663-4	chr5	76973188	76974188	+	902.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1013.0	NM_025691	66661.0	Mm.296976	NM_025691	ENSMUSG00000036323	Srp72	5730576P14Rik|72kDa|AI132477|BC019196|C77589	signal recognition particle 72	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35145283-3	chr7	35144771	35145771	+	902.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25978.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	18.0	7.5	10.0	6.0	4.5	9.0
Merged-chr10-96181550-4	chr10	96181035	96182035	+	902.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-44672.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-67033426-4	chr1	67032896	67033896	+	902.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190984, intron 3 of 9)	intron (NM_001190984, intron 3 of 9)	5438.0	NM_001190984	14768.0	Mm.20522	NM_021295	ENSMUSG00000026000	Lancl1	AW124738|Gpr69|Gpr69a|p40	LanC (bacterial lantibiotic synthetase component C)-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-3036456-4	chr9	3035938	3036938	+	902.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	2305.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173229737-4	chr2	173229254	173230254	+	902.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022995, intron 2 of 3)	intron (NM_022995, intron 2 of 3)	-10832.0	NM_001139519	58203.0	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80780094-4	chr11	80779587	80780587	+	902.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177390)	promoter-TSS (NM_177390)	-62.0	NM_177390	338367.0	Mm.151948	NM_177390	ENSMUSG00000035441	Myo1d	9930104H07Rik|AW544947|D11Ertd9e|myosin-1d	myosin ID	protein-coding	0.0	2.0	0.0	0.0	2.0	0.0
Merged-chr18-44780993-4	chr18	44780479	44781479	+	902.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085373, intron 1 of 18)	intron (NM_001085373, intron 1 of 18)	31203.0	NM_001085373	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	3.0	6.5	2.0	11.5	2.5	7.0
Merged-chr3-45284080-3	chr3	45283583	45284583	+	902.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045172, intron 6 of 8)	intron (NR_045172, intron 6 of 8)	94177.0	NR_045172	72511.0	Mm.140700	NR_045172	ENSMUSG00000097040	2610316D01Rik	-	RIKEN cDNA 2610316D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52378009-3	chr2	52377496	52378496	+	902.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-39198.0	NM_010889	17996.0	Mm.389247	NM_010889	ENSMUSG00000026950	Neb	AI595938	nebulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64001629-4	chr15	64001118	64002118	+	902.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144846, intron 1 of 11)	intron (NM_144846, intron 1 of 11)	-3552.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-92053235-4	chr13	92052694	92053694	+	902.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65152.0	NM_009027	19418.0	Mm.248630	NM_009027	ENSMUSG00000021708	Rasgrf2	6330417G04Rik|AW048350|Grf2|Ras-GRF2	RAS protein-specific guanine nucleotide-releasing factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66592287-4	chr9	66591768	66592768	+	902.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144937, intron 1 of 14)	CpG	847.0	NM_001302122	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34355181-4	chr17	34354676	34355676	+	902.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_079835, intron 1 of 8)	intron (NM_079835, intron 1 of 8)	354.0	NM_079835	547431.0	Mm.441007	NM_079835	ENSMUSG00000024340	Btnl2	BTL-II|BTLN2|Btl2|Gm315|NG9	butyrophilin-like 2	protein-coding	39.0	121.5	56.5	40.5	109.5	57.0
Merged-chr13-64151743-4	chr13	64151240	64152240	+	902.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361047, intron 1 of 5)	intron (NM_001361047, intron 1 of 5)	633.0	NM_001361047	238673.0	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	43.0	93.5	46.0	29.5	48.0	59.0
Merged-chr2-75639768-3	chr2	75639266	75640266	+	902.0833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	-19493.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105169136-3	chr4	105168644	105169644	+	902.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 1 of 5)	intron (NM_080555, intron 1 of 5)	11797.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	4.5	11.5	6.0	6.0	2.5	11.5
Merged-chr4-139259066-3	chr4	139258576	139259576	+	902.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 3 of 9)	intron (NM_001037761, intron 3 of 9)	51632.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	1.0	3.5	3.0	10.5	12.5	1.5
Merged-chr1-135523267-4	chr1	135522752	135523752	+	902.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173437, intron 3 of 28)	ORR1E|LTR|ERVL-MaLR	62103.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-80646808-4	chr1	80646315	80647315	+	902.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 2 of 55)	intron (NM_175291, intron 2 of 55)	18537.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-143740163-4	chr1	143739692	143740692	+	902.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001038594)	promoter-TSS (NM_001038594)	-255.0	NM_001038594	69367.0	Mm.272727	NM_023505	ENSMUSG00000018196	Glrx2	1700010P22Rik|AI645710|Grx2	glutaredoxin 2 (thioltransferase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63118703-2	chr14	63118203	63119203	+	902.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-3759.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77035936-2	chr10	77035436	77036436	+	902.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031196, intron 1 of 5)	intron (NM_031196, intron 1 of 5)	2724.0	NM_031196	20509.0	Mm.265060	NM_031196	ENSMUSG00000001436	Slc19a1	AI323572|RFC|RFC-1|RFC1	solute carrier family 19 (folate transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-34530218-4	chr15	34529710	34530710	+	902.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026340, exon 16 of 16)	exon (NM_026340, exon 16 of 16)	34899.0	NM_152894	67724.0	Mm.248779	NM_026340	ENSMUSG00000022325	Pop1	4932434G09Rik	processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79694005-3	chr15	79693520	79694520	+	902.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013818, intron 1 of 11)	intron (NM_013818, intron 1 of 11)	3124.0	NM_013818	14904.0	Mm.19080	NM_013818	ENSMUSG00000042535	Gtpbp1	AL022987|AW045683|C85212|GP-1|Gtpbp	GTP binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119391517-2	chr11	119391017	119392017	+	902.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_035453)	TTS (NR_035453)	1045.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	62.5	108.0	100.0	39.0	116.5	60.5
Merged-chr9-31281685-2	chr9	31281185	31282185	+	902.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10284.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11313916-4	chr16	11313416	11314416	+	902.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011608, exon 1 of 3)	5' UTR (NM_011608, exon 1 of 3)	107.0	NM_011608	21935.0	Mm.12935	NM_011608	ENSMUSG00000022496	Tnfrsf17	BCM|BCMA|Tnfrsf13|Tnfrsf13a	tumor necrosis factor receptor superfamily, member 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126979216-2	chr8	126978716	126979716	+	902.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151744, intron 1 of 1)	intron (NR_151744, intron 1 of 1)	222.0	NR_151744	629746.0	Mm.264954	NR_151744		Gm29688	-	predicted gene, 29688	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-26576381-3	chr10	26575881	26576881	+	902.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98270.0	NR_033633	667572.0	Mm.482728	NR_033633	ENSMUSG00000098179	Gm8709	EG667572	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.0	6.0	1.5	0.5	0.0	2.5
Merged-chr14-34675156-2	chr14	34674656	34675656	+	902.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004436, intron 1 of 18)	intron (NM_001004436, intron 1 of 18)	1228.0	NM_001301330	218914.0	Mm.27957	NM_001004436	ENSMUSG00000041408	Wapl	A530089A20Rik|BC037674|DIF-2|FOE|Wapal	WAPL cohesin release factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-41350084-4	chr15	41349575	41350575	+	902.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97407.0	NR_152565	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54954425-3	chr6	54953937	54954937	+	902.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172729, intron 1 of 11)	RLTR11A2|LTR|ERVK	17224.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69430909-2	chr11	69430409	69431409	+	902.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 74 of 85)	intron (NM_001081330, intron 74 of 85)	-17234.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135712424-3	chr5	135711914	135712914	+	902.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 1 of 15)	MTEb|LTR|ERVL-MaLR	23269.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41914227-3	chr19	41913727	41914727	+	902.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023418, intron 1 of 3)	intron (NM_023418, intron 1 of 3)	2356.0	NM_023418	18648.0	Mm.16783	NM_023418	ENSMUSG00000011752	Pgam1	2310050F24Rik|Pgam-1	phosphoglycerate mutase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29696123-4	chr6	29695614	29696614	+	902.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301407, intron 1 of 7)	intron (NM_001301407, intron 1 of 7)	1900.0	NM_146173	232670.0	Mm.225289	NM_146173	ENSMUSG00000001763	Tspan33	1300010A20Rik|Pen	tetraspanin 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109444247-1	chr3	109443747	109444747	+	902.0	f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	103564.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	2.0	3.0	11.5	4.5	5.0	13.5
Merged-chr14-70572628-1	chr14	70572128	70573128	+	902.0	f0_balb.idr	3' UTR (NM_021877, exon 20 of 20)	3' UTR (NM_021877, exon 20 of 20)	-5196.0	NM_153136	213484.0	Mm.34191	NM_153136	ENSMUSG00000045211	Nudt18	BC036718	nudix (nucleoside diphosphate linked moiety X)-type motif 18	protein-coding	0.0	0.0	2.0	3.0	7.5	5.5
Merged-chr8-75080489-2	chr8	75079989	75080989	+	902.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13129.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	17.0	28.5	14.5	12.5	19.0	11.0
Merged-chr19-7922561-1	chr19	7922061	7923061	+	902.0	f0_balb.idr	intron (NM_134256, intron 3 of 10)	L1_Mus2|LINE|L1	43466.0	NM_134256	171405.0	Mm.326517	NM_134256	ENSMUSG00000067656	Slc22a27	OAT6-L|OAT6-S|Oat9	solute carrier family 22, member 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124923409-2	chr6	124922909	124923909	+	902.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152158, intron 1 of 1)	intron (NR_152158, intron 1 of 1)	-5463.0	NM_026988	69202.0	Mm.142187	NM_026988	ENSMUSG00000030122	Ptms	2610009E16Rik	parathymosin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90276844-2	chr9	90276384	90277384	+	902.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	-6115.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	39.5	54.5	42.5	20.5	35.5	39.5
Merged-chr4-102104700-3	chr4	102104200	102105200	+	902.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117860.0	NM_001085520	381536.0	Mm.297685	NM_001085520	ENSMUSG00000078625	Gm12789	-	predicted gene 12789	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23820201-1	chr17	23819701	23820701	+	902.0	f1_balb.idr	exon (NM_175229, exon 10 of 14)	exon (NM_175229, exon 10 of 14)	-3090.0	NR_039586	100628593.0		NR_039586	ENSMUSG00000092981	Mir5125	mmu-mir-5125|mu-mir-5125	microRNA 5125	ncRNA	2.0	1.5	1.5	0.0	0.0	1.0
Merged-chr5-135456659-2	chr5	135456159	135457159	+	902.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 4 of 30)	B1_Mur2|SINE|Alu	-62113.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77528912-2	chr9	77528412	77529412	+	902.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146048, intron 1 of 13)	intron (NM_001146048, intron 1 of 13)	15147.0	NM_172528	214345.0	Mm.28534	NM_172528	ENSMUSG00000032352	Lrrc1	A430093J20Rik|AU016091|D030059I21|mKIAA4018	leucine rich repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74125401-4	chr1	74124897	74125897	+	902.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027884)	promoter-TSS (NM_027884)	-144.0	NM_001170641	435626.0	Mm.240447	NM_001034060	ENSMUSG00000061815	Rufy4	F930048N03Rik	RUN and FYVE domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-136377957-4	chr7	136377465	136378465	+	902.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	UCON26|Unknown|Unknown	-28550.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25220377-1	chr12	25219877	25220877	+	902.0	f1_balb.idr	Intergenic	Intergenic	91203.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.0	4.0	2.0	0.0	0.0	0.0
Merged-chr14-63124923-3	chr14	63124431	63125431	+	902.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	2469.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53087420-2	chr4	53086920	53087920	+	902.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 11 of 49)	intron (NM_013454, intron 11 of 49)	72475.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66009541-2	chr5	66009041	66010041	+	902.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5256.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74833921-2	chr11	74833421	74834421	+	902.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010813, intron 1 of 5)	intron (NM_010813, intron 1 of 5)	2997.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	1.5	9.0	16.5	10.5	14.5	8.0
Merged-chr19-53252742-2	chr19	53252242	53253242	+	902.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_036590, intron 1 of 2)	intron (NR_036590, intron 1 of 2)	2463.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-71262628-4	chr10	71262127	71263127	+	901.9874880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145420, intron 1 of 6)	intron (NM_145420, intron 1 of 6)	22635.0	NM_145420	216080.0	Mm.270530	NM_145420	ENSMUSG00000019927	Ube2d1	UBCH5	ubiquitin-conjugating enzyme E2D 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-137747669-4	chr6	137747138	137748138	+	901.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011499, intron 7 of 9)	intron (NM_011499, intron 7 of 9)	-6939.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-72890282-4	chr17	72889783	72890783	+	901.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28022.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-121955375-4	chr2	121954879	121955879	+	901.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290992)	promoter-TSS (NM_001290992)	-622.0	NM_001290992	329506.0	Mm.249405	NM_212450	ENSMUSG00000033411	Ctdspl2	D2Ertd485e|SCP4	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	protein-coding	7.0	27.0	7.5	15.5	17.5	15.0
Merged-chr3-37640966-4	chr3	37640459	37641459	+	901.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011896, intron 2 of 2)	CpG-9115	1012.0	NM_011896	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76467137-4	chr14	76466628	76467628	+	901.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207652, intron 1 of 2)	intron (NM_207652, intron 1 of 2)	-21308.0	NM_001177751	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	10.5	18.0	5.5	10.0	9.5	3.5
Merged-chr1-164057028-3	chr1	164056501	164057501	+	901.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011345, exon 14 of 14)	3' UTR (NM_011345, exon 14 of 14)	-5075.0	NM_001164059	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-10220714-3	chr13	10220215	10221215	+	901.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 2 of 4)	intron (NM_033269, intron 2 of 4)	140088.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66686728-5	chr15	66686093	66687093	+	901.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 11 of 47)	intron (NM_009375, intron 11 of 47)	15823.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	2.5	12.5	13.5	3.0	6.0	4.0
Merged-chr19-43921580-3	chr19	43921082	43922082	+	901.922241	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028029, intron 1 of 15)	intron (NM_028029, intron 1 of 15)	18616.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	0.5	0.0	4.0	6.0	0.0	3.0
Merged-chr17-29006985-4	chr17	29006481	29007481	+	901.9208369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357173, intron 1 of 13)	intron (NM_001357173, intron 1 of 13)	1014.0	NM_134115	106504.0	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	0.0	0.5	0.5	3.0	0.5	0.0
Merged-chr6-120917461-4	chr6	120916944	120917944	+	901.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007544)	promoter-TSS (NM_007544)	-620.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	63.5	144.0	92.0	80.5	118.5	96.0
Merged-chr16-94250270-4	chr16	94249803	94250803	+	901.90625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 5 of 10)	intron (NM_001360045, intron 5 of 10)	39988.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28832383-3	chr7	28831881	28832881	+	901.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_016772)	TTS (NM_016772)	-1413.0	NM_010706	16855.0	Mm.210336	NM_010706	ENSMUSG00000053964	Lgals4	gal-4	lectin, galactose binding, soluble 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86825277-6	chr12	86824930	86825930	+	901.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	59384.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21465544-3	chr10	21465040	21466040	+	901.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88240.0	NM_178713	237320.0	Mm.90181	NM_178713	ENSMUSG00000037542	Aldh8a1	Raldh4	aldehyde dehydrogenase 8 family, member A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149709091-3	chr4	149708596	149709596	+	901.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7467.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	11.5	33.5	33.0	14.5	52.0	16.5
Merged-chr2-36231164-4	chr2	36230646	36231646	+	901.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 2 of 10)	intron (NM_008969, intron 2 of 10)	720.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145244283-2	chr4	145243783	145244783	+	901.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	2587.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134258634-4	chr5	134258107	134259107	+	901.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359066, intron 15 of 32)	intron (NM_001359066, intron 15 of 32)	-28982.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118246702-3	chr11	118246143	118247143	+	901.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	MLT1D|LTR|ERVL-MaLR	1949.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120285301-4	chr14	120284797	120285797	+	901.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	9628.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	2.0	12.0	2.5	4.0	9.5	7.5
Merged-chr13-100849294-4	chr13	100848825	100849825	+	901.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-15898.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-42943186-2	chr9	42942686	42943686	+	901.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_175481, intron 1 of 20)	intron (NM_175481, intron 1 of 20)	1185.0	NM_175481	110637.0	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-41842832-4	chr5	41842273	41843273	+	901.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081422, intron 1 of 26)	intron (NM_001081422, intron 1 of 26)	1542.0	NM_001310601	665775.0	Mm.158726	NM_001081422	ENSMUSG00000061755	Bod1l	A230054D04Rik|AI853319|FAM44A|mKIAA1327	biorientation of chromosomes in cell division 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145773110-3	chr2	145772620	145773620	+	901.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12996.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16225598-4	chr1	16225099	16226099	+	901.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	119717.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92314424-2	chr16	92313924	92314924	+	901.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1958.0	NR_045300	100503166.0	Mm.443304	NR_045300	ENSMUSG00000085637	1700048M11Rik	Gm15980	RIKEN cDNA 1700048M11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54342817-4	chr13	54342272	54343272	+	901.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28577.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	5.0	4.0	9.5	2.0	2.5	3.0
Merged-chr7-63980288-4	chr7	63979780	63980780	+	901.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-41365.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20108368-4	chr11	20107913	20108913	+	901.804199	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146243, intron 1 of 8)	Lx8b|LINE|L1	4538.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	45.5	169.0	94.0	35.0	92.5	86.0
Merged-chr4-134760998-5	chr4	134760515	134761515	+	901.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145554, intron 1 of 8)	intron (NM_145554, intron 1 of 8)	6989.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102140764-4	chr15	102140270	102141270	+	901.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3416.0	NM_008344	16012.0	Mm.358609	NM_008344	ENSMUSG00000023046	Igfbp6	IGFBP-6	insulin-like growth factor binding protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99353113-4	chr9	99352606	99353606	+	901.7958369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177775, intron 1 of 22)	ORR1E|LTR|ERVL-MaLR	5424.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-75684202-6	chr12	75683687	75684687	+	901.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-14650.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121917765-3	chr5	121917264	121918264	+	901.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007804, intron 4 of 22)	intron (NM_007804, intron 4 of 22)	68767.0	NM_001359949	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	23.5	10.0	8.0	15.5	93.0	63.0
Merged-chr16-30262961-3	chr16	30262479	30263479	+	901.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027904, intron 1 of 1)	intron (NM_027904, intron 1 of 1)	4553.0	NM_027904	71756.0	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-106812235-4	chr13	106811695	106812695	+	901.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360897, intron 30 of 30)	intron (NM_001360897, intron 30 of 30)	124763.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	9.0	14.5	1.5	13.0	32.5	14.0
Merged-chr6-99242340-4	chr6	99241855	99242855	+	901.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	24160.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167763523-2	chr2	167763023	167764023	+	901.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72346.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-112394184-4	chr2	112393707	112394707	+	901.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024254, intron 1 of 9)	L2|LINE|L2	14996.0	NM_024254	72425.0	Mm.425091	NM_024254	ENSMUSG00000027132	Katnbl1	2410042D21Rik|AA166487|AA473307|AI467442	katanin p80 subunit B like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25694854-4	chr8	25694366	25695366	+	901.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081269, intron 15 of 22)	intron (NM_001081269, intron 15 of 22)	-25182.0	NR_121642	71910.0	Mm.385055	NM_028000	ENSMUSG00000031570	Plpp5	1810019D05Rik|2310022A04Rik|AW045471|Ppapdc1|Ppapdc1b	phospholipid phosphatase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120360717-2	chr11	120360217	120361217	+	901.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172802)	promoter-TSS (NM_172802)	-817.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117148021-2	chr10	117147537	117148537	+	901.75	f0_balb.idr|f0_c57.idr	intron (NM_177798, intron 1 of 9)	CpG	437.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106615664-2	chr11	106615164	106616164	+	901.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2734.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-26537909-4	chr5	26537423	26538423	+	901.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44609.0	NR_029445	75942.0	Mm.50087	NR_029445	ENSMUSG00000029044	4930584F24Rik	1700001J09Rik|4930522C06Rik	RIKEN cDNA 4930584F24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90577154-2	chr2	90576654	90577654	+	901.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	3493.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-51449845-4	chr15	51449339	51450339	+	901.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-54229.0	NR_045092	100502643.0	Mm.131987	NR_045092	ENSMUSG00000115654	Gm19303	-	predicted gene, 19303	ncRNA	8.5	5.0	4.5	4.5	5.0	6.5
Merged-chr8-111570643-3	chr8	111570142	111571142	+	901.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168623, intron 1 of 4)	L1MEd|LINE|L1	32299.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	0.0	2.0	0.0	0.0	0.0	1.0
Merged-chr8-71670723-4	chr8	71670206	71671206	+	901.715942	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 1 of 41)	intron (NM_001029873, intron 1 of 41)	1051.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	0.0	4.5	2.0	8.0	1.5	6.5
Merged-chr16-16856913-4	chr16	16856408	16857408	+	901.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A|LTR|ERVK	7077.0	NM_001190325	16136.0	Mm.184441	NM_001190325	ENSMUSG00000075370	Igll1	BB139905|Igl-5|Igll|Lambda5	immunoglobulin lambda-like polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38132666-8	chr16	38132167	38133167	+	901.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 1 of 11)	intron (NM_001347232, intron 1 of 11)	-43407.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-130954354-4	chr6	130953833	130954833	+	901.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	293029.0	NM_001170851	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	2.0	2.0	7.0	23.5	9.0	9.0
Merged-chr1-59483669-7	chr1	59483084	59484084	+	901.7023929999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008057, exon 1 of 1)	exon (NM_008057, exon 1 of 1)	1437.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	0.0	0.0	1.5	0.0	0.0	6.0
Merged-chr6-120478648-4	chr6	120478029	120479029	+	901.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 11 of 12)	MIR|SINE|MIR	15278.0	NM_033567	94047.0	Mm.23088	NM_033567	ENSMUSG00000094626	Tmem121b	AW048664|Cecr6	transmembrane protein 121B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-29553186-4	chr5	29552692	29553692	+	901.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15243.0	NR_102704	619355.0	Mm.426744	NR_102704		Gm6083	-	developmental pluripotency associated 5 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34784276-4	chr2	34783769	34784769	+	901.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145522, intron 6 of 7)	B3|SINE|B2	12179.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37082357-3	chr9	37081829	37082829	+	901.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 2 of 12)	intron (NM_001029838, intron 2 of 12)	64993.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80329364-3	chr10	80328901	80329901	+	901.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008793)	promoter-TSS (NM_008793)	72.0	NM_008793	18551.0	Mm.299916	NM_008793	ENSMUSG00000020131	Pcsk4	AI647044|L21221|NEC 3|NEC3|PC4|SPC5	proprotein convertase subtilisin/kexin type 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85746443-4	chr12	85745925	85746925	+	901.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145447)	promoter-TSS (NM_145447)	-114.0	NM_145447	217721.0	Mm.301076	NM_145447	ENSMUSG00000034258	Flvcr2	CCT|Mfsd7c	feline leukemia virus subgroup C cellular receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129377802-3	chr4	129377329	129378329	+	901.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028603, exon 1 of 5)	5' UTR (NM_028603, exon 1 of 5)	199.0	NM_028603	73680.0	Mm.32997	NM_028603	ENSMUSG00000028807	Zbtb8a	2410081M15Rik|AI480941	zinc finger and BTB domain containing 8a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81133864-3	chr10	81133357	81134357	+	901.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-2414.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45720583-2	chr7	45720083	45721083	+	901.6666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033170)	promoter-TSS (NM_001033170)	-637.0	NM_001033170	73813.0	Mm.322591	NM_001033170	ENSMUSG00000054161	Fam83e	4930403C10Rik	family with sequence similarity 83, member E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131095040-3	chr2	131094537	131095537	+	901.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8272.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	2.5	11.0	8.0	3.0	3.5	4.0
Merged-chr16-22043916-3	chr16	22043410	22044410	+	901.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027488, intron 15 of 16)	intron (NR_027488, intron 15 of 16)	34426.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3503308-2	chr5	3502808	3503808	+	901.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-40525.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100680158-2	chr15	100679658	100680658	+	901.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_033612, intron 6 of 7)	intron (NM_033612, intron 6 of 7)	7762.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-75874716-4	chr16	75874220	75875220	+	901.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023380, intron 5 of 7)	intron (NM_023380, intron 5 of 7)	34546.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51341846-2	chr3	51341356	51342356	+	901.666626	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-1212.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-13583853-4	chr3	13583371	13584371	+	901.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357034, intron 1 of 7)	L1_Mus2|LINE|L1	68994.0	NR_040598	75203.0	Mm.490940	NR_040598		4930539N22Rik	-	RIKEN cDNA 4930539N22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138131334-4	chr1	138130776	138131776	+	901.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	43850.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82464814-4	chr18	82464264	82465264	+	901.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-10359.0	NM_001025245	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69272592-2	chr8	69272082	69273082	+	901.583374	f0_balb.idr|f1_balb.idr	intron (NM_172491, intron 1 of 5)	intron (NM_172491, intron 1 of 5)	1502.0	NM_172491	211135.0	Mm.294970	NM_172491	ENSMUSG00000079038	D130040H23Rik	-	RIKEN cDNA D130040H23 gene	protein-coding	1.5	10.5	7.5	52.5	37.0	27.5
Merged-chr4-55342001-3	chr4	55341499	55342499	+	901.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-8043.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	2.0	9.0	11.0	2.0	14.0	23.5
Merged-chr1-131275348-4	chr1	131274872	131275872	+	901.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019777, intron 4 of 21)	intron (NM_019777, intron 4 of 21)	4191.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	1.0	0.0	0.0	3.0	5.5	5.5
Merged-chr1-59482856-4	chr1	59482360	59483360	+	901.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008057, exon 1 of 1)	5' UTR (NM_008057, exon 1 of 1)	713.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	18.5	78.0	41.0	15.0	73.0	32.5
Merged-chr11-100994812-4	chr11	100994237	100995237	+	901.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-14715.0	NM_016920	11975.0	Mm.340818	NM_016920	ENSMUSG00000019302	Atp6v0a1	AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1	ATPase, H+ transporting, lysosomal V0 subunit A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31033257-4	chr6	31032744	31033744	+	901.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B2|LTR|ERVL	29503.0	NR_029744	387222.0		NR_029744	ENSMUSG00000065610	Mir29a	Mirn29a|mir-29a|mmu-mir-29a	microRNA 29a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34181381-3	chr18	34180854	34181854	+	901.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39630.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	36.5	27.0	21.0	0.0	5.0	4.0
Merged-chr5-125275387-3	chr5	125274879	125275879	+	901.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65715.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135670710-3	chr3	135670219	135671219	+	901.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 1 of 24)	intron (NM_008689, intron 1 of 24)	20828.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138244640-4	chr1	138244114	138245114	+	901.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29124.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149705541-4	chr4	149705043	149706043	+	901.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3914.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	49.0	88.0	43.0	10.5	25.0	13.5
Merged-chr7-80575892-4	chr7	80575352	80576352	+	901.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-40733.0	NM_001042527	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	4.0	16.5	17.5	4.5	4.5	5.0
Merged-chr3-38105687-4	chr3	38105192	38106192	+	901.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102427.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58272649-4	chr15	58272127	58273127	+	901.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51542.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114778563-2	chr5	114778052	114779052	+	901.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026718, intron 1 of 14)	intron (NM_026718, intron 1 of 14)	3412.0	NM_026718	68420.0	Mm.275554	NM_026718	ENSMUSG00000041870	Ankrd13a	1100001D10Rik|ANKRD13|AU046136	ankyrin repeat domain 13a	protein-coding	3.0	0.0	4.0	2.0	0.0	0.0
Merged-chr2-116817841-4	chr2	116817336	116818336	+	901.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60855.0	NM_001355572	67356.0	Mm.131623	NM_026104	ENSMUSG00000027355	Tmco5	1700095F04Rik|Tmco5a	transmembrane and coiled-coil domains 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61078958-2	chr18	61078458	61079458	+	901.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001146268, exon 18 of 23)	exon (NM_001146268, exon 18 of 23)	-26614.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101447691-2	chr11	101447191	101448191	+	901.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027320)	promoter-TSS (NM_027320)	-721.0	NM_027320	70110.0	Mm.45558	NM_027320	ENSMUSG00000010358	Ifi35	2010008K16Rik|AW986054|IFP35|ifi-35	interferon-induced protein 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73536508-3	chr2	73535987	73536987	+	901.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa-int|LTR|ERVL-MaLR	-7000.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95897814-2	chr11	95897314	95898314	+	901.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008081, intron 1 of 10)	B3A|SINE|B2	17057.0	NM_008081	14422.0	Mm.340702	NM_008081	ENSMUSG00000013418	B4galnt2	AI593864|Dlb-1|Dlb1|Galg2|Galgt2|Ggm3|Igf2bp1	beta-1,4-N-acetyl-galactosaminyl transferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45556010-3	chr7	45555510	45556510	+	901.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025330, intron 1 of 8)	intron (NM_025330, intron 1 of 8)	1082.0	NM_025330	66065.0	Mm.285710	NM_025330	ENSMUSG00000030825	Hsd17b14	0610039E24Rik|Dhrs10|retSDR3	hydroxysteroid (17-beta) dehydrogenase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36082899-2	chr1	36082399	36083399	+	901.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	14499.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46255432-2	chr17	46254932	46255932	+	901.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111142, intron 2 of 5)	intron (NM_001111142, intron 2 of 5)	1267.0	NM_001111142	224813.0	Mm.70999	NM_001111142	ENSMUSG00000071073	Lrrc73	Gm88	leucine rich repeat containing 73	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4052182-2	chr19	4051682	4052682	+	901.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7265.0	NM_144869	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-142764749-4	chr2	142764220	142765220	+	901.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 12 of 26)	intron (NM_001355123, intron 12 of 26)	136744.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54722145-4	chr18	54721641	54722641	+	901.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110397.0	NR_045400	328957.0	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA	9.0	21.5	9.0	26.5	43.5	35.5
Merged-chr1-78659207-1	chr1	78658707	78659707	+	901.5	f0_balb.idr	intron (NM_001136226, intron 1 of 3)	intron (NM_001136226, intron 1 of 3)	767.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	0.0	5.0	3.0	0.0	0.0	4.5
Merged-chr4-46565817-4	chr4	46565304	46566304	+	901.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178893, intron 1 of 12)	intron (NM_178893, intron 1 of 12)	636.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-69400155-4	chr18	69399681	69400681	+	901.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	54021.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	53.5	120.5	94.0	57.0	104.5	61.0
Merged-chr1-54904305-2	chr1	54903805	54904805	+	901.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	Lx5c|LINE|L1	22082.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73515218-2	chr2	73514718	73515718	+	901.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	14269.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23437575-2	chr13	23437075	23438075	+	901.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6558.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60758933-1	chr18	60758433	60759433	+	901.5	f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-10268.0	NM_008306	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0.0	1.0	5.5	0.0	1.0	1.5
Merged-chr1-153486347-2	chr1	153485847	153486847	+	901.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007842, intron 1 of 27)	B1_Mus2|SINE|Alu	1313.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35266343-2	chr17	35265843	35266843	+	901.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001267808, intron 9 of 11)	intron (NM_001267808, intron 9 of 11)	3220.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-12981878-2	chr7	12981378	12982378	+	901.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001168561, exon 4 of 5)	exon (NM_001168561, exon 4 of 5)	4030.0	NM_001168561	269870.0	Mm.62083	NM_175558	ENSMUSG00000033961	Zfp446	A630035I11Rik|A930031C22|AA120513|AV306632	zinc finger protein 446	protein-coding	1.0	2.5	2.5	0.5	0.0	4.0
Merged-chr9-119934762-2	chr9	119934262	119935262	+	901.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028976, intron 1 of 8)	RMER6B|LTR|ERVK	2796.0	NM_028976	74498.0	Mm.104789	NM_028976	ENSMUSG00000032513	Gorasp1	5430411C10Rik|GOLPH5|GRASP65|P65	golgi reassembly stacking protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-18992366-2	chr7	18991866	18992866	+	901.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_145579, exon 2 of 3)	exon (NM_145579, exon 2 of 3)	1121.0	NM_145579	232934.0	Mm.440069	NM_145579	ENSMUSG00000048481	Mypop	Myodysa|P42pop	Myb-related transcription factor, partner of profilin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-89571746-2	chr1	89571246	89572246	+	901.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	112146.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-3182971-4	chr6	3182432	3183432	+	901.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105587.0	NR_036696	667335.0	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-15245076-4	chr3	15244558	15245558	+	901.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87244.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130912382-4	chr4	130911895	130912895	+	901.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010686)	promoter-TSS (NM_010686)	-939.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8633773-4	chr15	8633255	8634255	+	901.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_148938)	TTS (NM_148938)	77052.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132212414-3	chr2	132211889	132212889	+	901.4523929999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35399.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84634400-4	chr2	84633959	84634959	+	901.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007615, intron 1 of 19)	(TC)n|Simple_repeat|Simple_repeat	15021.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	24.0	34.0	32.5	25.0	29.5	35.5
Merged-chr2-160250105-3	chr2	160249610	160250610	+	901.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77384.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79083730-3	chr11	79083232	79084232	+	901.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	-23896.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55534117-3	chr4	55533590	55534590	+	901.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1615.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	6.0	33.0	23.5	12.5	20.5	7.0
Merged-chr14-75722240-4	chr14	75721733	75722733	+	901.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177381, intron 15 of 22)	intron (NM_177381, intron 15 of 22)	32260.0	NM_177381	338337.0	Mm.86507	NM_177381	ENSMUSG00000034893	Cog3	E430004N23	component of oligomeric golgi complex 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-72842037-4	chr2	72841524	72842524	+	901.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28307.0	NR_102349	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9901795-4	chr3	9901223	9902223	+	901.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68044.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	7.5	3.0	8.5	12.5	12.0	7.0
Merged-chr11-86658041-4	chr11	86657540	86658540	+	901.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 5 of 11)	B3|SINE|B2	13235.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43113626-4	chr5	43113129	43114129	+	901.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119834.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	10.0	13.0	10.0	36.0	14.0	11.0
Merged-chr9-22224558-2	chr9	22224058	22225058	+	901.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1145.0	NM_172763	235047.0	Mm.290849	NM_172763	ENSMUSG00000057982	Zfp809	BB114266|C330026E23	zinc finger protein 809	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35920262-2	chr17	35919762	35920762	+	901.388916	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357740, intron 1 of 18)	intron (NM_001357740, intron 1 of 18)	990.0	NM_001357740	52040.0	Mm.29385	NM_175934	ENSMUSG00000039220	Ppp1r10	2610025H06Rik|Cat53|D17Ertd808e|Fb19|Pnuts	protein phosphatase 1, regulatory subunit 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-46994469-4	chr14	46993982	46994982	+	901.3875119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	-6858.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	10.0	39.5	25.0	31.0	31.5	29.5
Merged-chr3-139021917-4	chr3	139021441	139022441	+	901.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 2 of 13)	intron (NM_001356388, intron 2 of 13)	53260.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77874474-4	chr15	77873978	77874978	+	901.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32303.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-63652553-5	chr15	63651992	63652992	+	901.366699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	156247.0	NM_031378	83492.0	Mm.335619	NM_031378	ENSMUSG00000079025	Gsdmc	Gsdmc1|Mlze	gasdermin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85496420-2	chr12	85495920	85496920	+	901.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22530.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98509486-2	chr15	98508986	98509986	+	901.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	10348.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-112288597-3	chr4	112288101	112289101	+	901.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102474, intron 8 of 9)	Lx2|LINE|L1	56356.0	NM_001102474	195564.0	Mm.259652	NM_177578	ENSMUSG00000070868	Skint3	A430090E18Rik|Skint-3	selection and upkeep of intraepithelial T cells 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-11202488-1	chr18	11201988	11202988	+	901.3333130000001	f0_balb.idr	Intergenic	L2a|LINE|L2	-149921.0	NR_105022	68434.0	Mm.57626	NR_105022	ENSMUSG00000097222	1010001N08Rik	Gata6as	RIKEN cDNA 1010001N08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-133136080-3	chr1	133135579	133136579	+	901.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133819, intron 1 of 1)	MIR|SINE|MIR	4913.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108636203-3	chr12	108635714	108636714	+	901.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 1 of 14)	intron (NM_001163396, intron 1 of 14)	461.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24785995-3	chr13	24785441	24786441	+	901.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15716.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88435831-3	chr6	88435318	88436318	+	901.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023060, intron 1 of 6)	intron (NM_023060, intron 1 of 6)	10721.0	NM_023060	65967.0	Mm.333237	NM_023060	ENSMUSG00000033216	Eefsec	Selb|mSelB|sec	eukaryotic elongation factor, selenocysteine-tRNA-specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98280724-4	chr12	98280194	98281194	+	901.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12059.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21431199-3	chr9	21430702	21431702	+	901.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 1 of 19)	(TC)n|Simple_repeat|Simple_repeat	6294.0	NM_001357719	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91769621-4	chr12	91769134	91770134	+	901.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	16802.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25119739-4	chr8	25119232	25120232	+	901.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17553.0	NR_155282	74744.0	Mm.117802	NR_155282		5830408C22Rik	2700026D01Rik	RIKEN cDNA 5830408C22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34096212-4	chr13	34095712	34096712	+	901.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046184, intron 2 of 4)	intron (NR_046184, intron 2 of 4)	17060.0	NR_046184	432745.0	Mm.159104	NR_046184	ENSMUSG00000113591	4930447K03Rik	-	RIKEN cDNA 4930447K03 gene	ncRNA	1.5	0.5	0.0	1.5	0.5	0.0
Merged-chr9-16042861-3	chr9	16042351	16043351	+	901.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 3 of 24)	intron (NM_001080814, intron 3 of 24)	-168295.0	NM_145712	244701.0	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11067056-4	chr16	11066529	11067529	+	901.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009223, intron 1 of 1)	CpG	731.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26467790-3	chr17	26467285	26468285	+	901.255554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40687.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	4.0	23.5	7.5	3.0	6.0	6.0
Merged-chr14-45142777-4	chr14	45142285	45143285	+	901.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310534, intron 18 of 20)	intron (NM_001310534, intron 18 of 20)	76640.0	NM_172597	70561.0	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55577604-4	chr19	55577113	55578113	+	901.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360432)	TTS (NM_001360432)	124591.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128750624-2	chr2	128750114	128751114	+	901.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 5 of 18)	intron (NM_008587, intron 5 of 18)	51699.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	29.5	110.5	43.5	22.5	57.0	30.0
Merged-chr9-111058673-4	chr9	111058150	111059150	+	901.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1132.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	212.0	429.0	236.0	196.5	507.5	269.5
Merged-chr4-132596493-2	chr4	132595993	132596993	+	901.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32426.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	2.5	6.5	3.5	3.5	1.0	2.0
Merged-chr3-156560885-4	chr3	156560403	156561403	+	901.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177274)	promoter-TSS (NM_177274)	784.0	NR_040398	329782.0	Mm.183459	NR_040398	ENSMUSG00000085084	4930570G19Rik	C630015G22	RIKEN cDNA 4930570G19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23376333-4	chr16	23375828	23376828	+	901.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52805.0	NM_001004151	239766.0	Mm.208751	NM_001004151	ENSMUSG00000033383	Rtp1	Gm1766|Gm604	receptor transporter protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-52361532-4	chr11	52361077	52362077	+	901.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011694, intron 1 of 8)	CpG	715.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32571330-4	chr11	32570877	32571877	+	901.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	38111.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	5.5	6.0	0.5	0.0	0.5	1.5
Merged-chr11-51859671-3	chr11	51859163	51860163	+	901.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2033.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44267084-4	chr9	44266598	44267598	+	901.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163742, intron 1 of 9)	intron (NM_001163742, intron 1 of 9)	1089.0	NM_001163743	270151.0	Mm.3957	NM_178420	ENSMUSG00000032109	Nlrx1	BC034204|NOD9	NLR family member X1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132312303-3	chr1	132311801	132312801	+	901.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3824.0	NM_001195025	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	0.0	2.0	3.0	0.0	2.0	3.0
Merged-chr8-19707373-5	chr8	19706838	19707838	+	901.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22238.0	NM_001270553	100861668.0	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31483167-4	chr2	31482662	31483662	+	901.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_002687, intron 5 of 15)	intron (NR_002687, intron 5 of 15)	12854.0	NR_002687	432466.0	Mm.333323	NR_002687	ENSMUSG00000046687	Gm5424	EG432466	argininosuccinate synthase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143119411-4	chr7	143118862	143119862	+	901.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008434, intron 1 of 15)	intron (NM_008434, intron 1 of 15)	12108.0	NM_008434	16535.0	Mm.439769	NM_008434	ENSMUSG00000009545	Kcnq1	AW559127|KVLQT1|Kcna9	potassium voltage-gated channel, subfamily Q, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16797974-4	chr1	16797427	16798427	+	901.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109471.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34196778-4	chr19	34196271	34197271	+	901.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	3837.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-135439665-2	chr2	135439165	135440165	+	901.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_019677, intron 32 of 32)	intron (NM_019677, intron 32 of 32)	143555.0	NR_015544	320684.0	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102713361-3	chr12	102712861	102713861	+	901.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8492.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20040916-4	chr10	20040446	20041446	+	901.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 7 of 29)	MTD|LTR|ERVL-MaLR	106420.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-106440046-3	chr6	106439539	106440539	+	901.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109749, intron 8 of 25)	intron (NM_001109749, intron 8 of 25)	308998.0	NM_008370	16192.0	Mm.3448	NM_008370	ENSMUSG00000005364	Il5ra	CD125|CDw125|Il5r	interleukin 5 receptor, alpha	protein-coding	7.0	12.0	9.0	8.0	43.0	32.0
Merged-chr1-183635280-3	chr1	183634822	183635822	+	901.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113655.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	34.5	107.5	84.5	4.0	12.5	3.0
Merged-chr14-70181302-4	chr14	70180811	70181811	+	901.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271407, intron 20 of 20)	intron (NM_001271407, intron 20 of 20)	-3639.0	NM_145978	213019.0	Mm.283968	NM_145978	ENSMUSG00000022090	Pdlim2	4732462F18Rik|Slim	PDZ and LIM domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180261982-4	chr1	180261462	180262462	+	901.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5662.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30061933-4	chr2	30061526	30062526	+	901.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023871)	promoter-TSS (NM_023871)	30.0	NM_023871	56086.0	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27443992-4	chr14	27443495	27444495	+	901.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028945, intron 6 of 23)	Lx7|LINE|L1	15161.0	NM_001114879	218850.0	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79807882-4	chr12	79807394	79808394	+	901.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 10 of 10)	intron (NM_009014, intron 10 of 10)	116839.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122817767-3	chr10	122817266	122818266	+	901.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 4 of 9)	intron (NM_001110218, intron 4 of 9)	138451.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	5.0	0.5	0.5	4.0	25.5	0.5
Merged-chr4-156032050-5	chr4	156031493	156032493	+	901.1333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CACG)n|Simple_repeat|Simple_repeat	5671.0	NM_021985	21936.0	Mm.3180	NM_009400	ENSMUSG00000041954	Tnfrsf18	AITR|Gitr	tumor necrosis factor receptor superfamily, member 18	protein-coding	27.0	42.0	42.0	10.0	31.5	16.0
Merged-chr4-149520240-4	chr4	149519719	149520719	+	901.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023465, intron 1 of 4)	intron (NM_023465, intron 1 of 4)	1978.0	NM_023465	67087.0	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-112259668-4	chr2	112259116	112260116	+	901.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172521)	promoter-TSS (NM_172521)	-325.0	NM_172521	213765.0	Mm.78965	NM_172521	ENSMUSG00000041358	Nutm1	4932438M10|Nut	NUT midline carcinoma, family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74949015-3	chr1	74948500	74949500	+	901.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010544, intron 1 of 2)	intron (NM_010544, intron 1 of 2)	2672.0	NM_001313683	16147.0	Mm.439736	NM_010544	ENSMUSG00000006538	Ihh	HHG-2	Indian hedgehog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171284221-10	chr1	171283702	171284702	+	901.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013919, intron 6 of 12)	RLTR17B_Mm|LTR|ERVK	-3016.0	NM_008911	19044.0	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	39.5	142.5	98.0	51.0	177.0	84.0
Merged-chr15-79441824-11	chr15	79441275	79442275	+	901.0985109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289899)	promoter-TSS (NM_001289899)	43.0	NM_001289899	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	3.0	21.0	12.5	1.0	8.5	17.0
Merged-chr14-118664433-4	chr14	118663924	118664924	+	901.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033336, intron 3 of 30)	MTC|LTR|ERVL-MaLR	12507.0	NM_001163675	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-45032829-4	chr16	45032343	45033343	+	901.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-61168.0	NM_026439	67896.0	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	10.0	13.0	11.0	12.5	19.0	21.0
Merged-chr12-4190845-3	chr12	4190406	4191406	+	901.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 3 of 21)	B1_Mur4|SINE|Alu	43059.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-49267119-4	chr6	49266614	49267614	+	901.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3062.0	NM_001362188	101214.0	Mm.196598	NM_198102	ENSMUSG00000029817	Tra2a	1500010G04Rik|AL022798|G430041M01Rik|mAWMS1	transformer 2 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6986277-3	chr17	6985778	6986778	+	901.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026611, intron 4 of 8).2	intron (NM_026611, intron 4 of 8).2	7418.0	NM_026611	68195.0	Mm.181237	NM_026611	ENSMUSG00000094724	Rnaset2b	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84085881-3	chr18	84085385	84086385	+	901.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081300, exon 1 of 2)	5' UTR (NM_001081300, exon 1 of 2)	677.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47795569-3	chr19	47795050	47796050	+	901.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027559, intron 11 of 37)	intron (NM_027559, intron 11 of 37)	-40393.0	NR_106165	102465883.0		NR_106165	ENSMUSG00000099069	Mir8090	Gm27862|mmu-mir-8090	microRNA 8090	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-100016623-3	chr10	100016123	100017123	+	901.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347156, intron 1 of 8)	CpG	802.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20655190-3	chr10	20654704	20655704	+	901.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 1 of 12)	Lx8|LINE|L1	69874.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68483373-4	chr11	68482876	68483876	+	901.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 5 of 18)	intron (NM_177320, intron 5 of 18)	-19643.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	4.5	8.5	0.0	3.0	5.5	0.5
Merged-chr7-141345038-4	chr7	141344557	141345557	+	901.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133191, intron 4 of 20)	B1_Mur1|SINE|Alu	6055.0	NM_133191	98845.0	Mm.27451	NM_133191	ENSMUSG00000025504	Eps8l2	AI042819|AW545405|Eps8r2	EPS8-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39370872-4	chr18	39370365	39371365	+	901.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 21 of 21)	Charlie4z|DNA|hAT-Charlie	116380.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	0.0	0.5	0.5	0.0	8.0
Merged-chr1-40294576-4	chr1	40294093	40295093	+	901.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001123382, intron 4 of 10)	intron (NM_001123382, intron 4 of 10)	28007.0	NM_001123382	16177.0	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117933012-4	chr5	117932485	117933485	+	901.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 19 of 27)	intron (NM_008712, intron 19 of 27)	-43785.0	NM_145564	231670.0	Mm.21912	NM_145564	ENSMUSG00000032898	Fbxo21	2810425J22Rik|AU016673	F-box protein 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-23865132-1	chr10	23864632	23865632	+	901.0	f0_c57.idr	intron (NM_011979, intron 4 of 6)	intron (NM_011979, intron 4 of 6)	13670.0	NM_011979	26464.0	Mm.27334	NM_011979	ENSMUSG00000020010	Vnn3	-	vanin 3	protein-coding	12.5	14.0	21.0	2.0	13.5	0.0
Merged-chr19-24703850-1	chr19	24703350	24704350	+	901.0	f0_balb.idr	intron (NM_175013, intron 10 of 10)	L3b|LINE|CR1	29842.0	NM_183160	226040.0	Mm.391170	NM_183160	ENSMUSG00000048572	Tmem252	E030010A14Rik	transmembrane protein 252	protein-coding	1.0	4.5	0.5	5.0	0.0	1.0
Merged-chr9-65772362-4	chr9	65771875	65772875	+	901.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172536, intron 2 of 9)	intron (NM_172536, intron 2 of 9)	55189.0	NM_172536	214812.0	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding	14.5	3.5	15.0	18.0	3.5	18.5
Merged-chr14-44980110-4	chr14	44979620	44980620	+	901.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7991.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17583858-1	chr17	17583358	17584358	+	901.0	f1_balb.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	40631.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	29.5	45.5	28.0	30.5	76.5	37.5
Merged-chr12-86265810-3	chr12	86265313	86266313	+	901.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027405, intron 6 of 9)	RMER10B|LTR|ERVL	23955.0	NM_001324488	70373.0	Mm.252967	NM_027405	ENSMUSG00000021254	Gpatch2l	1700020O03Rik|4732487G21Rik|A630090I05Rik|Kiaa1152	G patch domain containing 2 like	protein-coding	1.5	13.5	5.5	1.5	7.5	7.0
Merged-chr15-34357919-1	chr15	34357419	34358419	+	901.0	f0_balb.idr	promoter-TSS (NM_001256161)	promoter-TSS (NM_001256161)	-47.0	NM_001256161	77358.0	Mm.402759	NM_001256161	ENSMUSG00000094447	9430069I07Rik	-	RIKEN cDNA 9430069I07 gene	protein-coding	0.0	0.0	3.5	0.0	2.5	1.0
Merged-chr18-61403444-2	chr18	61402936	61403936	+	901.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-3005.0	NM_133249	170826.0	Mm.415302	NM_133249	ENSMUSG00000033871	Ppargc1b	4631412G21Rik|Perc	peroxisome proliferative activated receptor, gamma, coactivator 1 beta	protein-coding	1.0	1.0	1.0	0.0	2.0	0.0
Merged-chr13-73306472-2	chr13	73305972	73306972	+	901.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22010.0	NR_033306	407785.0	Mm.29897	NM_010888	ENSMUSG00000021606	Ndufs6	BC059730|IP13	NADH dehydrogenase (ubiquinone) Fe-S protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25678575-2	chr7	25678075	25679075	+	901.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-2205.0	NM_001362154	232987.0	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111556218-3	chr12	111555727	111556727	+	901.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	15281.0	NR_033168	100316932.0	Mm.484709	NR_033168	ENSMUSG00000064493	Snora28	MBI-13	small nucleolar RNA, H/ACA box 28	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8878553-1	chr10	8878053	8879053	+	901.0	f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	7517.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	35.5	87.5	110.0	33.5	41.0	29.0
Merged-chr9-99141488-1	chr9	99140988	99141988	+	901.0	f1_c57bl6.idr	Intergenic	Intergenic	-1277.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	1.5	0.0	1.0	1.0	0.0	0.5
Merged-chr11-115647601-2	chr11	115647101	115648101	+	901.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 4 of 5)	intron (NM_001313936, intron 4 of 5)	-19306.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-47234059-1	chr13	47233559	47234559	+	901.0	f1_c57bl6.idr	intron (NM_146042, intron 4 of 7)	intron (NM_146042, intron 4 of 7)	40056.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	9.5	24.0	20.5	11.5	40.0	23.5
Merged-chr9-84544905-4	chr9	84544413	84545413	+	901.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-229485.0	NR_040739	75253.0	Mm.401984	NR_040739	ENSMUSG00000099724	4930554C24Rik	-	RIKEN cDNA 4930554C24 gene	ncRNA	18.0	22.5	13.0	12.0	3.5	3.5
Merged-chr19-6077968-2	chr19	6077468	6078468	+	901.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081041)	promoter-TSS (NM_001081041)	-781.0	NM_001081041	68505.0	Mm.227361	NM_001081041	ENSMUSG00000024799	Vps51	1110014N23Rik|3110057M17Rik|AI837850|Ffr	VPS51 GARP complex subunit	protein-coding	0.0	2.0	0.0	0.0	2.0	0.0
Merged-chr19-6926053-2	chr19	6925553	6926553	+	901.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039494)	promoter-TSS (NM_001039494)	-673.0	NM_001039494	67077.0	Mm.251306	NM_001039494	ENSMUSG00000050623	Catsperz	1700019N12Rik|A430107B04Rik|MLZ-622|Tex40	cation channel sperm associated auxiliary subunit zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9739078-1	chr4	9738578	9739578	+	901.0	f1_balb.idr	Intergenic	RLTR20B5_MM|LTR|ERVK	-31507.0	NR_030693	320152.0	Mm.159946	NR_030693		4930412C18Rik	5730591J02Rik	RIKEN cDNA 4930412C18 gene	ncRNA	3.5	4.0	16.5	8.0	6.5	10.5
Merged-chr15-100150749-4	chr15	100150242	100151242	+	901.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037311, intron 1 of 3)	intron (NR_037311, intron 1 of 3)	-3654.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33957963-2	chr16	33957463	33958463	+	901.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348087, intron 4 of 4)	B2_Mm1t|SINE|B2	9075.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62108312-1	chr15	62107812	62108812	+	901.0	f0_balb.idr	intron (NR_132746, intron 2 of 6)	intron (NR_132746, intron 2 of 6)	69055.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51732627-2	chr3	51732127	51733127	+	901.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	71448.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13500171-2	chr10	13499671	13500671	+	901.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330198)	promoter-TSS (NM_001330198)	-857.0	NM_001330198	66848.0	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72383418-2	chr6	72382918	72383918	+	901.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2950.0	NM_016872	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-19589220-2	chr6	19588720	19589720	+	901.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	33878.0	NR_105789	102465192.0		NR_105789	ENSMUSG00000099149	Mir6370	Gm27480|mmu-mir-6370	microRNA 6370	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70986574-2	chr17	70986074	70987074	+	901.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023402, intron 1 of 3)	intron (NM_023402, intron 1 of 3)	3942.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-75765233-2	chr16	75764733	75765733	+	901.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_030201, exon 2 of 5)	exon (NM_030201, exon 2 of 5)	1585.0	NR_027492	110920.0	Mm.26704	NM_030201	ENSMUSG00000032932	Hspa13	1600002I10Rik|AV006182|B230217N24Rik|Stch	heat shock protein 70 family, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139303462-4	chr7	139302969	139303969	+	901.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54987.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50874076-4	chr6	50873583	50874583	+	901.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97968.0	NR_045984	319981.0	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91604481-2	chr16	91603980	91604980	+	901.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-6800.0	NM_030018	77975.0	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30036167-1	chr16	30035667	30036667	+	901.0	f1_c57bl6.idr	intron (NR_045878, intron 2 of 3)	intron (NR_045878, intron 2 of 3)	3312.0	NR_045878	71528.0	Mm.297640	NR_045878		9030404E10Rik	-	RIKEN cDNA 9030404E10 gene	ncRNA	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr9-57820668-4	chr9	57820170	57821170	+	901.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019689, intron 1 of 7)	intron (NM_019689, intron 1 of 7)	13564.0	NM_019689	56380.0	Mm.425588	NM_019689	ENSMUSG00000004661	Arid3b	Bdp|Dri2	AT rich interactive domain 3B (BRIGHT-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57776819-4	chr10	57776332	57777332	+	901.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8091.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-14036571-3	chr13	14036109	14037109	+	901.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178337, intron 1 of 16)	L1_Mus3|LINE|L1	3029.0	NR_130788	70430.0	Mm.260209	NM_178337	ENSMUSG00000039233	Tbce	2610206D02Rik|C530005D02Rik|pmn	tubulin-specific chaperone E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24221244-1	chr17	24220744	24221744	+	901.0	f1_balb.idr	promoter-TSS (NM_028056)	promoter-TSS (NM_028056)	-393.0	NM_028056	72016.0	Mm.23881	NM_028056	ENSMUSG00000024118	Tedc2	1600002H07Rik	tubulin epsilon and delta complex 2	protein-coding	6.5	14.5	23.5	33.0	27.0	30.5
Merged-chr11-20220544-3	chr11	20220046	20221046	+	901.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 3 of 5)	intron (NM_008996, intron 3 of 5)	19134.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	11.5	33.5	18.0	10.5	37.5	8.0
Merged-chr15-86181518-2	chr15	86181018	86182018	+	901.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-4210.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-27340348-2	chr11	27339848	27340848	+	901.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3-int|LTR|ERVL-MaLR	555240.0	NR_002890	654472.0	Mm.347777	NR_002890		Gm12070	-	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	1.5	0.0	5.0	0.0	0.0	8.5
Merged-chr3-153655261-2	chr3	153654761	153655761	+	901.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 1 of 4)	intron (NM_011372, intron 1 of 4)	69872.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-174050558-2	chr1	174050058	174051058	+	901.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_146716, exon 1 of 1)	exon (NM_146716, exon 1 of 1)	183.0	NM_146716	258711.0	Mm.377648	NM_146716	ENSMUSG00000047048	Olfr432	MOR123-2	olfactory receptor 432	protein-coding	1.0	1.0	4.0	1.0	8.0	0.0
Merged-chr18-44393583-4	chr18	44393043	44394043	+	901.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027490, intron 1 of 10)	intron (NM_027490, intron 1 of 10)	13043.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	16.0	28.0	11.0	20.5	27.0	12.5
Merged-chr15-91168201-7	chr15	91167696	91168696	+	900.9761960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011994, intron 6 of 9)	intron (NM_011994, intron 6 of 9)	23811.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43082541-3	chr5	43082055	43083055	+	900.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-150908.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0.0	0.0	1.0	0.0	0.0	0.5
Merged-chr12-4595278-4	chr12	4594801	4595801	+	900.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198969, intron 1 of 16)	intron (NM_001198969, intron 1 of 16)	2293.0	NM_001198968	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-110727936-3	chr10	110727457	110728457	+	900.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17482.0	NM_001358560	52679.0	Mm.11747	NM_178609	ENSMUSG00000020185	E2f7	A630014C11Rik|D10Ertd739e|E2F-7	E2F transcription factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-113805520-4	chr9	113805021	113806021	+	900.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286603, intron 1 of 4)	intron (NM_001286603, intron 1 of 4)	-7065.0	NM_001286601	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77216834-5	chr11	77216301	77217301	+	900.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 1 of 14)	intron (NM_177710, intron 1 of 14)	376.0	NM_177710	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59787666-3	chr11	59787176	59788176	+	900.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110894)	promoter-TSS (NR_110894)	-19.0	NM_001290283	194908.0	Mm.344651	NM_183139	ENSMUSG00000043648	Pld6	4933433K01Rik|Gm10|Zuc|mZuc|mitoPLD	phospholipase D family, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116476027-3	chr7	116475553	116476553	+	900.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28316.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120430318-3	chr1	120429819	120430819	+	900.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	74705.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0.0	0.5	0.5	0.5	0.0	0.0
Merged-chr6-49236527-3	chr6	49236027	49237027	+	900.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-21573.0	NM_023670	140488.0	Mm.281018	NM_023670	ENSMUSG00000029814	Igf2bp3	2610101N11Rik|AA522010|AL022933|AU045931|IMP-3|IMP3|Koc13|Neilsen|mimp3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127282570-4	chr3	127282052	127283052	+	900.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	121247.0	NR_105029	100862268.0	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA	15.5	29.0	25.5	35.0	53.5	55.0
Merged-chr5-66094079-4	chr5	66093572	66094572	+	900.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	ORR1B1|LTR|ERVL-MaLR	4107.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	10.0	14.0	8.0	10.5	14.0	6.0
Merged-chr6-140614892-4	chr6	140614398	140615398	+	900.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7765.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14851438-4	chr8	14850945	14851945	+	900.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37091.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148500570-5	chr2	148500077	148501077	+	900.8466800000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57042.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97296071-2	chr6	97295571	97296571	+	900.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001346637, exon 21 of 23)	exon (NM_001346637, exon 21 of 23)	-43291.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	2.5	16.0	10.5	5.5	20.0	4.5
Merged-chr1-34642552-2	chr1	34642052	34643052	+	900.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6342.0	NR_033627	241051.0	Mm.282827	NR_033627		AA619741	-	PHD finger protein 19 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136988583-4	chr5	136988101	136989101	+	900.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027318)	promoter-TSS (NM_027318)	-642.0	NM_027318	70103.0	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	5.0	11.5	18.5	9.0	16.0	28.0
Merged-chr3-138118929-3	chr3	138118425	138119425	+	900.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_001355052, intron 7 of 21)	intron (NM_001355052, intron 7 of 21)	12728.0	NM_008642	17777.0	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding	68.5	132.5	101.5	58.5	214.0	118.5
Merged-chr2-18939066-3	chr2	18938571	18939571	+	900.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	59050.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13154835-2	chr8	13154335	13155335	+	900.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4326.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65976455-2	chr3	65975924	65976924	+	900.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-18175.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	24.0	26.0	28.5	20.0	30.0	22.5
Merged-chr2-152295448-4	chr2	152294928	152295928	+	900.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024196, intron 1 of 7)	intron (NM_024196, intron 1 of 7)	1556.0	NM_024196	67231.0	Mm.288733	NM_024196	ENSMUSG00000027465	Tbc1d20	1110028I04Rik|2810442O16Rik|AI414693|bs	TBC1 domain family, member 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27302905-4	chr3	27302392	27303392	+	900.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14185.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-28589550-3	chr12	28589068	28590068	+	900.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7085.0	NM_053156	94041.0	Mm.84927	NM_053156	ENSMUSG00000020636	Allc	1700012B22Rik|Alc	allantoicase	protein-coding	0.0	0.0	1.0	1.0	1.0	3.0
Merged-chr9-116137787-4	chr9	116137184	116138184	+	900.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	37679.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	24.5	64.0	38.5	57.0	56.0	60.5
Merged-chr3-122566245-4	chr3	122565753	122566753	+	900.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114665, intron 5 of 15)	HAL1|LINE|L1	-24572.0	NR_106117	102465764.0		NR_106117	ENSMUSG00000104773	Mir7657	mmu-mir-7657	microRNA 7657	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-55736869-4	chr17	55736364	55737364	+	900.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13120.0	NM_139138	52614.0	Mm.210497	NM_139138	ENSMUSG00000032915	Adgre4	D17Ertd479e|Egf-tm7|Emr4|Fire|Gpr127	adhesion G protein-coupled receptor E4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-41519141-3	chr5	41518636	41519636	+	900.8110960000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	188555.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	2.0	8.5	11.0	0.0	0.5	0.0
Merged-chr8-41041879-3	chr8	41041374	41042374	+	900.8110960000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005865)	promoter-TSS (NM_001005865)	57.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	16.5	59.0	21.5	7.0	21.0	16.5
Merged-chr5-125074698-4	chr5	125074202	125075202	+	900.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011424, intron 14 of 46)	intron (NM_011424, intron 14 of 46)	71227.0	NM_028443	73121.0	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95644980-2	chr3	95644497	95645497	+	900.791626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-13724.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	8.0	51.5	13.0	22.0	35.0	4.5
Merged-chr12-3873719-6	chr12	3873201	3874201	+	900.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 6 of 22)	intron (NM_007872, intron 6 of 22)	-11457.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97338045-3	chr15	97337533	97338533	+	900.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 3 of 5)	RMER17C|LTR|ERVK	-90746.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138187888-4	chr5	138187364	138188364	+	900.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009315)	promoter-TSS (NM_009315)	329.0	NM_178612	66455.0	Mm.24592	NM_178612	ENSMUSG00000036968	Cnpy4	2610019P18Rik	canopy FGF signaling regulator 4	protein-coding	8.0	26.0	4.0	0.5	12.0	16.5
Merged-chr9-109100840-4	chr9	109100338	109101338	+	900.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172775, exon 3 of 38)	exon (NM_172775, exon 3 of 38)	5402.0	NM_172775	235611.0	Mm.53862	NM_172775	ENSMUSG00000053646	Plxnb1	2900002G15Rik|AU042020|mKIAA0407	plexin B1	protein-coding	0.0	0.0	3.0	0.0	3.0	0.0
Merged-chr8-73324512-4	chr8	73324001	73325001	+	900.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010687, intron 1 of 14)	intron (NM_010687, intron 1 of 14)	29039.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	4.5	5.0	2.0	4.0	4.0	2.0
Merged-chr4-43482199-2	chr4	43481751	43482751	+	900.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019436, exon 5 of 5)	3' UTR (NM_019436, exon 5 of 5)	1458.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	3.5	1.0	0.0	0.0	8.5	0.0
Merged-chr1-171646623-4	chr1	171646115	171647115	+	900.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347184, intron 1 of 5)	intron (NM_001347184, intron 1 of 5)	2384.0	NM_001347184	75345.0	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	28.0	21.0	40.0	3.0	6.0	5.5
Merged-chr18-49458430-4	chr18	49457938	49458938	+	900.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64851.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	0.0	1.5	0.0	0.5	0.0	3.5
Merged-chr5-62843028-4	chr5	62842564	62843564	+	900.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001170705, exon 6 of 9)	exon (NM_001170705, exon 6 of 9)	29241.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	52.0	72.5	43.5	26.0	64.5	26.5
Merged-chr17-83272782-4	chr17	83272312	83273312	+	900.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57529.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	1.0	2.0	0.5	1.0	0.0	0.5
Merged-chr3-54248552-5	chr3	54247988	54248988	+	900.742859	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253682, intron 3 of 11)	intron (NM_001253682, intron 3 of 11)	92431.0	NM_001253682	22066.0	Mm.10100	NM_016984	ENSMUSG00000027748	Trpc4	CCE1|STRPC4|Trp4|Trrp4	transient receptor potential cation channel, subfamily C, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-52119299-5	chr14	52118749	52119749	+	900.7416380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023879, exon 4 of 25)	exon (NM_023879, exon 4 of 25)	8346.0	NM_023879	77945.0	Mm.21662	NM_023879	ENSMUSG00000057132	Rpgrip1	0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding	134.5	160.0	164.0	22.0	21.0	24.0
Merged-chr6-143220742-3	chr6	143220260	143221260	+	900.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25128.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49201270-3	chr11	49200771	49201771	+	900.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2229.0	NM_001024846	22720.0	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-24725857-3	chr8	24725342	24726342	+	900.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009619)	promoter-TSS (NM_009619)	10.0	NM_009619	11497.0	Mm.5168	NM_009619	ENSMUSG00000031553	Adam3	Cyrn1|Taz83|tMDC	a disintegrin and metallopeptidase domain 3 (cyritestin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168583245-4	chr2	168582805	168583805	+	900.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291169, intron 1 of 10)	intron (NM_001291169, intron 1 of 10)	7060.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	3.0	4.5	1.5	24.0	16.0	7.0
Merged-chr1-165701056-4	chr1	165700550	165701550	+	900.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	7044.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20534053-4	chr10	20533558	20534558	+	900.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 2 of 12)	UCON26|Unknown|Unknown	14270.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37140421-5	chr10	37139850	37140850	+	900.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1424.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-5692448-4	chr4	5691962	5692962	+	900.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173426, intron 1 of 2)	MMERVK9C_I-int|LTR|ERVK	-31850.0	NM_001355716	242297.0	Mm.331470	NM_173426	ENSMUSG00000049119	Fam110b	1700012H17Rik|5031405P22|AW049855	family with sequence similarity 110, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108798516-2	chr3	108798016	108799016	+	900.7000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_011504, intron 16 of 18)	B2_Mm2|SINE|B2	41986.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5867364-3	chr13	5866864	5867864	+	900.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011803, exon 4 of 4)	3' UTR (NM_011803, exon 4 of 4)	5875.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30744664-3	chr13	30744178	30745178	+	900.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4555.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122273337-3	chr8	122272819	122273819	+	900.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8822.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	3.0	6.5	0.0	2.0	6.0	0.0
Merged-chr2-27693309-3	chr2	27692801	27693801	+	900.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-15991.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-67278531-3	chr13	67278026	67279026	+	900.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033540)	promoter-TSS (NR_033540)	-68.0	NR_033540	100038627.0	Mm.387089	NR_033540	ENSMUSG00000114442	F630042J09Rik	-	RIKEN cDNA F630042J09 gene	ncRNA	0.0	0.5	1.0	14.5	10.5	18.0
Merged-chr1-37492401-3	chr1	37491934	37492934	+	900.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 4 of 15)	intron (NM_173870, intron 4 of 15)	-3829.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45966197-3	chr13	45965720	45966720	+	900.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1229.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-75195842-4	chr9	75195334	75196334	+	900.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010864, intron 31 of 40)	intron (NM_010864, intron 31 of 40)	-36180.0	NM_001081322	208943.0	Mm.41339	NM_001081322	ENSMUSG00000033590	Myo5c	9130003O20Rik|BB085560|C330029I24	myosin VC	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-103065681-4	chr13	103065159	103066159	+	900.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 3 of 28)	intron (NM_175171, intron 3 of 28)	268833.0	NM_175171	328329.0	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92503042-3	chr5	92502475	92503475	+	900.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	Arthur1A|DNA|hAT-Tip100	2682.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35303346-4	chr12	35302857	35303857	+	900.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108460.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	6.5	8.0	22.0	16.5	4.5	7.5
Merged-chr3-153973629-3	chr3	153973120	153974120	+	900.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081263, exon 1 of 22)	5' UTR (NM_001081263, exon 1 of 22)	184.0	NM_001081263	242259.0	Mm.239962	NM_001081263	ENSMUSG00000028360	Slc44a5	AA117069|Gm422	solute carrier family 44, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109495811-2	chr11	109495311	109496311	+	900.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361977, intron 1 of 10)	intron (NM_001361977, intron 1 of 10)	472.0	NM_001361977	74008.0	Mm.482224	NM_028710	ENSMUSG00000020604	Arsg	6330406P08Rik|AI846872|ASG	arylsulfatase G	protein-coding	1.0	0.0	1.0	6.5	0.0	1.5
Merged-chr11-59637183-4	chr11	59636701	59637701	+	900.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24235.0	NM_001011740	257886.0	Mm.457883	NM_001011740	ENSMUSG00000044061	Olfr225	MOR256-51	olfactory receptor 225	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-125146361-4	chr4	125145860	125146860	+	900.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18479.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-62814023-3	chr16	62813510	62814510	+	900.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026588)	promoter-TSS (NM_026588)	-666.0	NM_026588	68159.0	Mm.386793	NM_026588	ENSMUSG00000047854	Stx19	A030009B12Rik	syntaxin 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-51334077-3	chr1	51333565	51334565	+	900.638855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045151)	promoter-TSS (NR_045151)	-286.0	NR_045151	442821.0	Mm.118030	NR_045151	ENSMUSG00000101799	9330175M20Rik	-	RIKEN cDNA 9330175M20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-48590125-3	chr14	48589630	48590630	+	900.6333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72604.0	NM_001360226	18424.0	Mm.134516	NM_144841	ENSMUSG00000021848	Otx2	E130306E05Rik	orthodenticle homeobox 2	protein-coding	0.0	1.0	0.0	6.5	9.0	2.5
Merged-chr3-52501896-4	chr3	52501387	52502387	+	900.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15077.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21093600-2	chr11	21093100	21094100	+	900.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_023324, intron 1 of 6)	intron (NM_023324, intron 1 of 6)	2276.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54917771-4	chr6	54917279	54918279	+	900.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	53882.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25227747-3	chr15	25227245	25228245	+	900.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	186019.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27760257-19	chr2	27759693	27760693	+	900.600891	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011305, exon 10 of 10)	3' UTR (NM_011305, exon 10 of 10)	49610.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21326692-3	chr5	21326196	21327196	+	900.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 4 of 18)	intron (NM_029195, intron 4 of 18)	-45977.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-55552299-3	chr15	55551809	55552809	+	900.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026759, intron 2 of 6)	intron (NM_026759, intron 2 of 6)	5003.0	NM_026759	68537.0	Mm.236795	NM_026759	ENSMUSG00000022370	Mrpl13	1110002D09Rik	mitochondrial ribosomal protein L13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-30515161-3	chr3	30514657	30515657	+	900.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5482.0	NM_021442	14013.0	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr11-5011654-3	chr11	5011146	5012146	+	900.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243043, intron 2 of 22)	intron (NM_001243043, intron 2 of 22)	24822.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84210651-3	chr8	84210142	84211142	+	900.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172503)	TTS (NM_172503)	-1735.0	NR_037294	100526528.0		NR_037294	ENSMUSG00000105458	Mir3074-2	mir-3074-2|mmu-mir-3074-2	microRNA 3074-2	ncRNA	8.0	38.5	17.0	13.5	21.0	28.5
Merged-chr9-103229339-4	chr9	103228800	103229800	+	900.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133977, intron 1 of 16)	intron (NM_133977, intron 1 of 16)	986.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	39.5	34.5	20.0	17.5	57.5	40.0
Merged-chr13-49242423-4	chr13	49241926	49242926	+	900.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028340, intron 1 of 4)	intron (NM_028340, intron 1 of 4)	5868.0	NM_001360772	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4840999-3	chr12	4840530	4841530	+	900.5238039999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016863, intron 1 of 3)	intron (NM_016863, intron 1 of 3)	565.0	NM_016863	14226.0	Mm.20453	NM_016863	ENSMUSG00000020635	Fkbp1b	12.6kDa|AW494148|FKBP12.6|calstabin2	FK506 binding protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-121251405-4	chr6	121250909	121251909	+	900.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011909, intron 1 of 10)	intron (NM_011909, intron 1 of 10)	5503.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	1.0	6.0	0.0	0.5	0.5	5.5
Merged-chr11-78189027-10	chr11	78188399	78189399	+	900.511902	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_033475, exon 1 of 10)	5' UTR (NM_033475, exon 1 of 10)	151.0	NM_033475	19376.0	Mm.275864	NM_033475	ENSMUSG00000002059	Rab34	AI326479|Narr|Rah|Rah1	RAB34, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-92668761-4	chr13	92668254	92669254	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172588, intron 2 of 11)	MLT1A1|LTR|ERVL-MaLR	57616.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-52001779-4	chr12	52001276	52002276	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347404, intron 2 of 3)	intron (NM_001347404, intron 2 of 3)	4731.0	NM_029545	328092.0	Mm.2821	NM_029545	ENSMUSG00000020956	Dtd2	4930578F06Rik|6530401N04Rik|B830049N13Rik	D-tyrosyl-tRNA deacylase 2	protein-coding	0.5	20.0	5.0	3.0	8.0	2.5
Merged-chr2-156418571-4	chr2	156418075	156419075	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-2334.0	NM_001291122	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	12.0	8.0	18.0	4.0	21.0	8.0
Merged-chr1-24695870-4	chr1	24695445	24696445	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026719, intron 3 of 15)	intron (NM_026719, intron 3 of 15)	17027.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-3345416-2	chr9	3344916	3345916	+	900.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026303, intron 4 of 11)	intron (NM_026303, intron 4 of 11)	10185.0	NM_026303	67667.0	Mm.116968	NM_026303	ENSMUSG00000025899	Alkbh8	4930562C03Rik|8030431D03Rik|9430088N01Rik|Abh8	alkB homolog 8, tRNA methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31122049-2	chr17	31121549	31122549	+	900.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7562.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	1.5	0.0	10.5	0.0	2.0	0.5
Merged-chr10-80698481-2	chr10	80697981	80698981	+	900.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	RMER1B|Other|Other	3339.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133806018-4	chr4	133805526	133806526	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-52415.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	61.5	153.0	88.0	64.5	130.0	87.0
Merged-chr8-57574044-2	chr8	57573544	57574544	+	900.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 2 of 11)	intron (NM_001167981, intron 2 of 11)	62201.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-54317431-4	chr3	54316938	54317938	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253682, intron 10 of 11)	intron (NM_001253682, intron 10 of 11)	-43669.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	2.0	9.0	9.5	5.5	27.0	25.5
Merged-chr7-4293151-4	chr7	4292709	4293709	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19020.0	NM_008848	18729.0	Mm.326531	NM_008848		Pira6	12M1|Pira10|p91B	paired-Ig-like receptor A6	protein-coding	113.0	165.5	121.0	11.5	13.0	6.5
Merged-chr6-38937944-2	chr6	38937444	38938444	+	900.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	MER96|DNA|hAT-Tip100	18958.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154915520-4	chr4	154915019	154916019	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	12558.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	37.0	35.5	57.0	8.0	8.0	7.0
Merged-chr9-22494597-2	chr9	22494097	22495097	+	900.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360259, intron 2 of 22)	intron (NM_001360259, intron 2 of 22)	18882.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104994779-4	chr3	104994243	104995243	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33034.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91750147-2	chr6	91749647	91750647	+	900.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 12 of 14)	intron (NM_009320, intron 12 of 14)	57246.0	NM_001159507	243547.0	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65611639-2	chr17	65611139	65612139	+	900.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355402, intron 1 of 6)	intron (NM_001355402, intron 1 of 6)	1916.0	NM_001355402	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-85844002-2	chr9	85843502	85844502	+	900.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011627, exon 2 of 2)	exon (NM_011627, exon 2 of 2)	1150.0	NM_001164792	21983.0	Mm.20864	NM_011627	ENSMUSG00000035274	Tpbg	5T4|AW495680|WAIF1	trophoblast glycoprotein	protein-coding	2.0	0.0	1.5	0.5	0.0	0.0
Merged-chr2-117180692-4	chr2	117180183	117181183	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_033524, exon 7 of 7)	3' UTR (NM_033524, exon 7 of 7)	-4444.0	NR_030440	732489.0		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66985458-2	chr9	66984958	66985958	+	900.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-9974.0	NM_030717	80907.0	Mm.157882	NM_030717	ENSMUSG00000032370	Lactb	LACT-1|Lact1|Mrpl56	lactamase, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134622855-4	chr4	134622336	134623336	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 2 of 11)	ORR1D2|LTR|ERVL-MaLR	-54985.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-125660180-3	chr2	125659682	125660682	+	900.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199022, intron 6 of 11)	intron (NM_199022, intron 6 of 11)	-12918.0	NM_025613	58521.0	Mm.425101	NM_025613	ENSMUSG00000091337	Eid1	2610002K20Rik|Cri1|EID-1|ORF12|PNAS-22|PTD014	EP300 interacting inhibitor of differentiation 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30593574-2	chr16	30593074	30594074	+	900.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5985.0	NM_178069	224092.0	Mm.567	NM_178069	ENSMUSG00000022538	Lsg1	5830465I20|AA409273|D16Bwg1547e	large 60S subunit nuclear export GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-84192403-2	chr16	84191903	84192903	+	900.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-178740.0	NR_040567	75247.0	Mm.417813	NR_040567		4930553E22Rik	-	RIKEN cDNA 4930553E22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-124012877-4	chr9	124012368	124013368	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-9103.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135395881-2	chr5	135395381	135396381	+	900.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1335.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16346377-2	chr19	16345877	16346877	+	900.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 5 of 6)	intron (NM_008139, intron 5 of 6)	-31373.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92028283-4	chr16	92027799	92028799	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30023.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	3.5	11.0	9.0	3.0	9.0	9.0
Merged-chr19-11788028-3	chr19	11787533	11788533	+	900.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011502, intron 5 of 10)	intron (NM_011502, intron 5 of 10)	17618.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	4.5	2.5	3.0	2.5	13.0	6.5
Merged-chr6-22390989-6	chr6	22390439	22391439	+	900.488892	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-34858.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-73289865-4	chr8	73289364	73290364	+	900.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010687, intron 1 of 14)	intron (NM_010687, intron 1 of 14)	63676.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111037786-7	chr12	111037235	111038235	+	900.464294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2063.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43842880-4	chr5	43842377	43843377	+	900.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009763, exon 9 of 9)	3' UTR (NM_009763, exon 9 of 9)	23984.0	NM_009763	12182.0	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	11.5	7.0	14.5	7.0	7.0	6.5
Merged-chr16-50589938-4	chr16	50589431	50590431	+	900.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040566)	promoter-TSS (NR_040566)	-572.0	NR_040566	75211.0	Mm.399337	NR_040566		4930542D17Rik	-	RIKEN cDNA 4930542D17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-51044844-4	chr9	51044335	51045335	+	900.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	32259.0	NM_001033534	244864.0	Mm.335152	NM_001033534	ENSMUSG00000060594	Layn	E030012M19Rik|Gm511	layilin	protein-coding	2.5	1.5	1.5	1.5	0.0	4.5
Merged-chr9-66833440-4	chr9	66832930	66833930	+	900.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026674, intron 1 of 5)	intron (NM_026674, intron 1 of 5)	1276.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124669472-5	chr2	124669028	124670028	+	900.4500119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15947.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47598185-3	chr17	47597687	47598687	+	900.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 6 of 6)	AT_rich|Low_complexity|Low_complexity	4720.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50540360-3	chr9	50539846	50540846	+	900.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359610, intron 6 of 10)	intron (NM_001359610, intron 6 of 10)	-11705.0	NM_011220	19286.0	Mm.35856	NM_011220	ENSMUSG00000032067	Pts	PTPS	6-pyruvoyl-tetrahydropterin synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122061100-3	chr5	122060585	122061585	+	900.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11234.0	NM_001312908	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	0.0	3.0	0.0	1.0	2.5	4.0
Merged-chr13-44536645-3	chr13	44536146	44537146	+	900.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96919.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	0.0	1.0	0.5	2.0	3.0	0.0
Merged-chr15-65744685-3	chr15	65744185	65745185	+	900.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42335.0	NM_133766	76740.0	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117089380-3	chr5	117088901	117089901	+	900.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26592.0	NM_001122666	71954.0	Mm.34456	NM_178622	ENSMUSG00000066900	Suds3	2400003N08Rik|2410008L21Rik|AU067672|mSds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	protein-coding	1.5	4.5	0.5	1.5	4.5	0.5
Merged-chr2-160374422-3	chr2	160373919	160374919	+	900.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7354.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156722386-4	chr2	156721873	156722873	+	900.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042487, intron 1 of 6)	intron (NM_001042487, intron 1 of 6)	1094.0	NM_001042487	228836.0	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	DLG associated protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-62464499-4	chr7	62463998	62464998	+	900.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013788)	promoter-TSS (NM_013788)	12.0	NM_013788	27412.0	Mm.422745	NM_013788	ENSMUSG00000070526	Peg12	Frat3	paternally expressed 12	protein-coding	0.5	20.5	6.0	3.5	6.0	0.5
Merged-chr14-65414501-4	chr14	65413986	65414986	+	900.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010932, intron 1 of 3)	Lx4A|LINE|L1	10986.0	NM_001205075	18155.0	Mm.16347	NM_010932	ENSMUSG00000045731	Pnoc	N/OFQ|Npnc1|OFQ/N	prepronociceptin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44401878-4	chr7	44401393	44402393	+	900.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	17767.0	NM_016663	20981.0	Mm.4824	NM_016663	ENSMUSG00000030731	Syt3	AI385753|sytIII	synaptotagmin III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-26135426-4	chr11	26134925	26135925	+	900.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027973, intron 1 of 5)	intron (NR_027973, intron 1 of 5)	-66815.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	4.0	9.5	2.0	0.0	0.5	3.5
Merged-chr15-76817087-4	chr15	76816584	76817584	+	900.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	1086.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81194641-2	chr10	81194141	81195141	+	900.416626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015477)	promoter-TSS (NR_015477)	-50.0	NR_015477	69678.0	Mm.81562	NR_015477		Atcayos	2310050B05Rik	ataxia, cerebellar, Cayman type, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12926626-3	chr18	12926127	12927127	+	900.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207530, intron 4 of 27)	intron (NM_207530, intron 4 of 27)	15214.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69877057-4	chr11	69876557	69877557	+	900.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195710, intron 4 of 6)	intron (NM_001195710, intron 4 of 6)	961.0	NM_001195710	100503361.0	Mm.340490	NM_001195710	ENSMUSG00000094845	Tmem95	432576	transmembrane protein 95	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102032942-4	chr5	102032444	102033444	+	900.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	36977.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132011942-4	chr1	132011453	132012453	+	900.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007923, intron 1 of 4)	L1MB8|LINE|L1	4348.0	NM_007923	13714.0	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67542599-2	chr15	67542078	67543078	+	900.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	315809.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	3.0	2.5	4.0	7.0	13.5	3.0
Merged-chr14-121331588-2	chr14	121331089	121332089	+	900.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_145465, intron 2 of 10)	intron (NM_145465, intron 2 of 10)	47641.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	1.0	0.0	3.0	1.0	1.5	1.5
Merged-chr7-140080904-2	chr7	140080404	140081404	+	900.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026769, intron 1 of 5)	intron (NM_026769, intron 1 of 5)	1397.0	NM_001190386	68566.0	Mm.44241	NM_026769	ENSMUSG00000025468	Caly	0710001P07Rik|1110004A22Rik|Calcyon|Drd1ip	calcyon neuron-specific vesicular protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-6576223-2	chr13	6575723	6576723	+	900.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360106, intron 23 of 26)	B2_Mm2|SINE|B2	28066.0	NM_001360106	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4201472-3	chr8	4200971	4201971	+	900.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346730, intron 11 of 19)	intron (NM_001346730, intron 11 of 19)	15841.0	NM_207203	73072.0	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	1.0	0.0	10.5	0.0	1.0	2.5
Merged-chr5-122400374-3	chr5	122399839	122400839	+	900.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019824, intron 2 of 6)	intron (NM_019824, intron 2 of 6)	8461.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87698023-3	chr16	87697549	87698549	+	900.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007520)	promoter-TSS (NM_007520)	-905.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84937398-3	chr8	84936905	84937905	+	900.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019945)	promoter-TSS (NM_019945)	-52.0	NM_019945	56527.0	Mm.154614	NM_019945	ENSMUSG00000053693	Mast1	9430008B02Rik|SAST|SAST170	microtubule associated serine/threonine kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39771844-3	chr10	39771350	39772350	+	900.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011264, intron 1 of 31)	intron (NM_011264, intron 1 of 31)	39690.0	NM_011264	19714.0	Mm.439723	NM_011264	ENSMUSG00000019841	Rev3l	Rev|Rev3|Sez4	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25286470-3	chr10	25285983	25286983	+	900.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 2 of 7)	ID_B1|SINE|B4	12680.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35919245-3	chr16	35918726	35919726	+	900.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19244.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115160198-3	chr11	115159713	115160713	+	900.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021411, intron 6 of 8)	intron (NM_021411, intron 6 of 8)	-3128.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	1.5	0.0	0.5	0.0	0.0	3.0
Merged-chr18-26022959-3	chr18	26022473	26023473	+	900.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-268816.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-100932384-4	chr3	100931867	100932867	+	900.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001165953, exon 7 of 7)	3' UTR (NM_001165953, exon 7 of 7)	9874.0	NM_001165953	229644.0	Mm.189351	NM_194343	ENSMUSG00000033233	Trim45	4921530N01Rik	tripartite motif-containing 45	protein-coding	3.5	0.0	0.0	0.0	0.0	1.0
Merged-chr4-155784261-4	chr4	155783795	155784795	+	900.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033394, exon 2 of 2)	exon (NM_001033394, exon 2 of 2)	1579.0	NM_001033394	320587.0	Mm.384382	NM_001033394	ENSMUSG00000073680	Tmem88b	A230069A22Rik	transmembrane protein 88B	protein-coding	0.0	0.0	1.5	0.0	0.0	3.0
Merged-chr7-115124961-3	chr7	115124470	115125470	+	900.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	173696.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66124489-4	chr14	66123996	66124996	+	900.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271402)	promoter-TSS (NM_001271402)	26.0	NM_001271402	13850.0	Mm.15295	NM_007940	ENSMUSG00000022040	Ephx2	CEH|Eph2|SEH|sEP	epoxide hydrolase 2, cytoplasmic	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr17-73949774-4	chr17	73949255	73950255	+	900.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 1 of 35)	intron (NM_011723, intron 1 of 35)	441.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-150168942-4	chr5	150168437	150169437	+	900.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90993.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	1.0	3.5	2.5	3.5	0.0	0.0
Merged-chr7-24838889-4	chr7	24838412	24839412	+	900.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045096, intron 10 of 11)	intron (NR_045096, intron 10 of 11)	20117.0	NR_045096	545936.0	Mm.376228	NR_045096	ENSMUSG00000011350	Gm5893	EG545936|Gm477	predicted gene 5893	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75010563-3	chr14	75010052	75011052	+	900.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 3 of 3)	intron (NR_030568, intron 3 of 3)	-5475.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31130476-2	chr14	31129976	31130976	+	900.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1546.0	NM_001308464	66487.0	Mm.379116	NM_001308091	ENSMUSG00000058351	Smim4	2010107H07Rik|Gm41122	small integral membrane protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127519064-2	chr2	127518557	127519557	+	900.25	f0_c57.idr|f1_c57bl6.idr	intron (NR_110989, intron 1 of 8)	intron (NR_110989, intron 1 of 8)	2335.0	NM_001291005	56461.0	Mm.315292	NM_019789	ENSMUSG00000079056	Kcnip3	4933407H12Rik|AI413860|Csen|DREAM|KChIP3|R74849	Kv channel interacting protein 3, calsenilin	protein-coding	0.5	1.0	0.0	3.5	0.5	1.5
Merged-chr19-27438447-4	chr19	27437876	27438876	+	900.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8339.0	NR_027987	107372.0	Mm.17942	NM_175354		C030016D13Rik	AW413347	RIKEN cDNA C030016D13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172586587-4	chr1	172586055	172587055	+	900.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029084, intron 2 of 4)	intron (NM_029084, intron 2 of 4)	4013.0	NM_029084	74748.0	Mm.179812	NM_029084	ENSMUSG00000053318	Slamf8	5830408F06Rik|Blame|SBBI42	SLAM family member 8	protein-coding	26.5	27.5	33.5	6.5	1.0	2.0
Merged-chr14-47529254-2	chr14	47528771	47529771	+	900.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_030236, exon 2 of 2)	exon (NM_030236, exon 2 of 2)	39163.0	NM_172599	100504663.0	Mm.287279	NM_172599	ENSMUSG00000037526	Atg14	4832427M01|Atg14L|D14Ertd114e|D14Ertd436e	autophagy related 14	protein-coding	1.0	9.5	3.0	1.0	1.0	1.0
Merged-chr2-78048597-3	chr2	78048107	78049107	+	900.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2570.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-78668516-4	chr14	78668013	78669013	+	900.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081336, intron 2 of 29)	intron (NM_001081336, intron 2 of 29)	-24062.0	NR_104044	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45743811-2	chr17	45743311	45744311	+	900.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 1 of 4)	intron (NR_152153, intron 1 of 4)	9305.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102246204-5	chr12	102245744	102246744	+	900.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172152, intron 12 of 16)	intron (NM_172152, intron 12 of 16)	-36830.0	NM_177620	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	6.5	15.0	1.5	3.0	0.0	2.5
Merged-chr18-75392468-3	chr18	75391932	75392932	+	900.244446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042660, intron 3 of 3)	intron (NM_001042660, intron 3 of 3)	25067.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145198510-4	chr7	145198062	145199062	+	900.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132643, intron 19 of 22)	intron (NR_132643, intron 19 of 22)	9557.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	0.0	0.5	1.0	0.0	12.0	3.0
Merged-chr5-90655974-3	chr5	90655479	90656479	+	900.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15452.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	17.0	22.0	15.0	2.0	19.0	22.5
Merged-chr14-76503286-3	chr14	76502795	76503795	+	900.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310647)	promoter-TSS (NM_001310647)	-931.0	NM_001310647	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	8.0	1.0	2.5	10.5	0.0	2.0
Merged-chr1-132121407-2	chr1	132120907	132121907	+	900.208374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008795, intron 4 of 15)	intron (NM_008795, intron 4 of 15)	18278.0	NM_008795	18557.0	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21152865-4	chr9	21152344	21153344	+	900.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2938.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44408373-4	chr19	44407899	44408899	+	900.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009127)	promoter-TSS (NM_009127)	-690.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-115643089-5	chr3	115642530	115643530	+	900.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	72025.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.0	0.5	3.0	0.0	4.5	2.5
Merged-chr3-103140239-3	chr3	103139742	103140742	+	900.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356383)	promoter-TSS (NM_001356383)	-84.0	NM_001356383	329727.0	Mm.293641	NM_177857	ENSMUSG00000007379	Dennd2c	A930010I20Rik	DENN/MADD domain containing 2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-35833429-4	chr11	35832965	35833965	+	900.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025936, intron 1 of 14)	intron (NM_025936, intron 1 of 14)	1063.0	NM_025936	104458.0	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-42967099-4	chr5	42966585	42967585	+	900.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-266378.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27925439-3	chr15	27924897	27925897	+	900.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	100451.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131270345-3	chr1	131269823	131270823	+	900.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019777, intron 10 of 21)	intron (NM_019777, intron 10 of 21)	9240.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19283183-3	chr7	19282732	19283732	+	900.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013648, intron 1 of 9)	intron (NM_013648, intron 1 of 9)	608.0	NM_013648	20167.0	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52079919-3	chr13	52079433	52080433	+	900.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16808.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-56019650-4	chr7	56019142	56020142	+	900.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153578)	promoter-TSS (NM_153578)	-69.0	NM_153578	233280.0	Mm.389901	NM_153578	ENSMUSG00000047037	Nipa1	1110027G09Rik|A830014A18Rik|FSP3|Spg6	non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26507436-4	chr2	26506981	26507981	+	900.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3554.0	NR_132655	102639736.0		NR_132655		Gm35978	-	predicted gene, 35978	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-43953197-4	chr16	43952689	43953689	+	900.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027801, intron 12 of 15)	MTD|LTR|ERVL-MaLR	25861.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	0.5	8.0	11.0	0.0	26.0	17.5
Merged-chr6-24515059-4	chr6	24514514	24515514	+	900.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172535)	promoter-TSS (NM_172535)	53.0	NM_172535	214704.0	Mm.61131	NM_172535	ENSMUSG00000046192	Iqub	4932408B21Rik|Trs4	IQ motif and ubiquitin domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122577209-3	chr6	122576760	122577760	+	900.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_031159)	TTS (NM_031159)	23451.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95861506-3	chr16	95861001	95862001	+	900.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040484, intron 1 of 3)	intron (NR_040484, intron 1 of 3)	37212.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76539890-4	chr16	76539394	76540394	+	900.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8901.0	NR_155449	102632730.0		NR_155449		Gm30726	-	predicted gene, 30726	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25483419-5	chr9	25482809	25483809	+	900.1533199999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026189, exon 2 of 8)	exon (NM_026189, exon 2 of 8)	1712.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-26753325-3	chr10	26752834	26753834	+	900.138855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19178.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9751670-4	chr3	9751168	9752168	+	900.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	82011.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20067509-4	chr14	20067021	20068021	+	900.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15651.0	NM_026209	67509.0	Mm.292423	NM_026209	ENSMUSG00000045107	Saysd1	1810063B07Rik|4930488P03Rik	SAYSVFN motif domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122008901-4	chr10	122008377	122009377	+	900.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081037, intron 1 of 21)	intron (NM_001081037, intron 1 of 21)	38438.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8992993-4	chr19	8992505	8993505	+	900.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039959, intron 1 of 5)	intron (NM_001039959, intron 1 of 5)	3721.0	NM_001286518	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	8.5	0.0	0.0	0.0	6.5	0.0
Merged-chr6-72143542-2	chr6	72143042	72144042	+	900.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 4 of 6)	intron (NM_001035228, intron 4 of 6)	-20345.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19596798-4	chr10	19596270	19597270	+	900.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010511, intron 1 of 6)	MTEb|LTR|ERVL-MaLR	4821.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53091030-3	chr18	53090541	53091541	+	900.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-85251.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	0.0	1.0	1.5	1.0	0.0	3.0
Merged-chr18-32406838-2	chr18	32406338	32407338	+	900.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 2 of 17)	intron (NM_001360876, intron 2 of 17)	-28554.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79861397-2	chr10	79860897	79861897	+	900.099976	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001170935, exon 9 of 9)	3' UTR (NM_001170935, exon 9 of 9)	-1190.0	NR_105875	102465549.0		NR_105875	ENSMUSG00000098562	Mir6910	Gm27763|mmu-mir-6910	microRNA 6910	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-14179440-4	chr10	14178923	14179923	+	900.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	213044.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	7.0	1.5	9.0	1.5	8.0	18.5
Merged-chr18-69571210-4	chr18	69570736	69571736	+	900.087524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	225076.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-175626209-4	chr1	175625867	175626867	+	900.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010209)	promoter-TSS (NM_010209)	-732.0	NM_010209	14194.0	Mm.41502	NM_010209	ENSMUSG00000026526	Fh1	Fh|Fh-1	fumarate hydratase 1	protein-coding	3.5	7.0	10.0	11.0	11.5	16.0
Merged-chr8-46804281-4	chr8	46803775	46804775	+	900.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 2 of 7)	intron (NR_152560, intron 2 of 7)	64530.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135615481-4	chr5	135614971	135615971	+	900.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-17183.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-58913766-4	chr4	58913236	58914236	+	900.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172381)	promoter-TSS (NM_172381)	-987.0	NM_172381	230249.0	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|Ecpas|mKIAA0368	expressed sequence AI314180	protein-coding	0.5	16.0	0.0	8.0	0.0	2.0
Merged-chr4-108454827-4	chr4	108454316	108455316	+	900.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4610.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	6.5	20.5	10.0	8.5	20.5	9.5
Merged-chr18-11687023-3	chr18	11686524	11687524	+	900.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081223, intron 4 of 18)	intron (NM_001081223, intron 4 of 18)	29675.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	29.5	29.5	21.0	12.0	20.0	9.0
Merged-chr7-58859141-4	chr7	58858628	58859628	+	900.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	200926.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	0.0	1.0	0.5	3.5	0.0	0.0
Merged-chr12-21543417-4	chr12	21542917	21543917	+	900.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-125981.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	3.0	11.5	4.5	29.5	40.0	28.0
Merged-chr16-35490754-4	chr16	35490215	35491215	+	900.03125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028295, intron 1 of 16)	CpG	158.0	NM_028295	72599.0	Mm.71015	NM_028295	ENSMUSG00000022844	Pdia5	2700053F16Rik|AU015525|Pdir	protein disulfide isomerase associated 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57522390-6	chr9	57521929	57522929	+	900.0277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007747, intron 1 of 4)	intron (NM_007747, intron 1 of 4)	1197.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129082910-4	chr4	129082416	129083416	+	900.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 8 of 8)	intron (NM_029219, intron 8 of 8)	-22614.0	NM_025452	66260.0	Mm.25295	NM_025452	ENSMUSG00000028786	Tmem54	1810017F10Rik|AI507302	transmembrane protein 54	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91778199-2	chr12	91777699	91778699	+	900.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	8237.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60539516-2	chr11	60539016	60540016	+	900.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172943, intron 1 of 3)	intron (NM_172943, intron 1 of 3)	1833.0	NM_172943	268420.0	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101932173-3	chr5	101931679	101932679	+	900.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 15 of 66)	B3A|SINE|B2	137742.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38352686-4	chr6	38352239	38353239	+	900.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028864, intron 1 of 8)	intron (NM_028864, intron 1 of 8)	1864.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-116892846-4	chr8	116892345	116893345	+	900.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026844, intron 3 of 3)	intron (NM_026844, intron 3 of 3)	28591.0	NM_026844	66531.0	Mm.4011	NM_026844	ENSMUSG00000014633	Cmc2	1110046L09Rik|2310061C15Rik|DC13	COX assembly mitochondrial protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-33159041-2	chr19	33158541	33159541	+	900.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146342, intron 4 of 4)	intron (NM_001146342, intron 4 of 4)	1929.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59345898-2	chr2	59345398	59346398	+	900.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 17 of 20)	intron (NM_175464, intron 17 of 20)	40784.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108602335-1	chr9	108601835	108602835	+	900.0	f1_c57bl6.idr	TTS (NM_011790)	TTS (NM_011790)	-4723.0	NR_151688	74443.0	Mm.226534	NM_028944	ENSMUSG00000006675	P4htm	4933406E20Rik|AI853847|BB128974|HIF-PH4|HPH-4|P4H-TM|Ph-4	prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)	protein-coding	0.0	7.0	0.0	0.0	0.0	0.0
Merged-chr1-136133561-2	chr1	136133061	136134061	+	900.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	2171.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-14058456-2	chr9	14057956	14058956	+	900.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-217845.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3737788-1	chr12	3737288	3738288	+	900.0	f1_c57bl6.idr	intron (NM_001162465, intron 12 of 17)	B3A|SINE|B2	-69192.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	1.5	0.0	2.5	1.5	0.0	2.5
Merged-chr1-36546727-2	chr1	36546227	36547227	+	900.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026241, intron 1 of 3)	intron (NM_026241, intron 1 of 3)	525.0	NM_001310533	109346.0	Mm.247537	NM_026241	ENSMUSG00000079610	Ankrd39	9130416N05Rik|C030004B10Rik	ankyrin repeat domain 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133179487-1	chr4	133178987	133179987	+	900.0	f1_c57bl6.idr	intron (NM_153423, intron 2 of 8)	RSINE1|SINE|B4	-16168.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	61.0	110.5	53.5	56.0	74.5	40.5
Merged-chr5-111192109-1	chr5	111191609	111192609	+	900.0	f0_balb.idr	intron (NM_001267622, intron 6 of 22)	intron (NM_001267622, intron 6 of 22)	-138588.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	10.5	4.5	2.0	1.0	0.5	1.0
Merged-chr7-25285188-2	chr7	25284688	25285688	+	900.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027882, exon 3 of 20)	exon (NM_027882, exon 3 of 20)	3009.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63438815-2	chr14	63438315	63439315	+	900.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177628, intron 1 of 3)	intron (NM_177628, intron 1 of 3)	2421.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-45580559-3	chr5	45580075	45581075	+	900.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021416, exon 5 of 16)	exon (NM_021416, exon 5 of 16)	-58700.0	NR_102378	319251.0	Mm.402857	NR_102378	ENSMUSG00000097825	9630001P10Rik	-	RIKEN cDNA 9630001P10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-12224501-2	chr12	12224010	12225010	+	900.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-37629.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	93.5	265.5	156.0	70.5	259.0	156.0
Merged-chr10-53616454-1	chr10	53615954	53616954	+	900.0	f0_balb.idr	intron (NM_027830, intron 5 of 13)	intron (NM_027830, intron 5 of 13)	13985.0	NM_027830	71567.0	Mm.278221	NM_027830	ENSMUSG00000058298	Mcm9	9030408O17Rik|Gm235|Mcmdc1	minichromosome maintenance 9 homologous recombination repair factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139344713-2	chr5	139344213	139345213	+	900.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_197980, intron 1 of 2)	intron (NM_197980, intron 1 of 2)	453.0	NM_197980	68033.0	Mm.261064	NM_197980	ENSMUSG00000045438	Cox19	1810074D02Rik|2810437L13Rik	cytochrome c oxidase assembly protein 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40628372-3	chr9	40627886	40628886	+	900.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57578.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	2.5	0.0	7.0	7.0	6.5	10.5
Merged-chr13-48931943-1	chr13	48931443	48932443	+	900.0	f0_balb.idr	intron (NM_001033268, intron 5 of 17)	intron (NM_001033268, intron 5 of 17)	35885.0	NM_001033268	218236.0	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-160234052-4	chr1	160233551	160234551	+	900.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038621, intron 6 of 8)	intron (NM_001038621, intron 6 of 8)	-21159.0	NM_009786	12301.0	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	36.5	56.0	33.5	44.5	87.0	88.5
Merged-chr3-8743702-2	chr3	8743202	8744202	+	900.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76664.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82504100-2	chr18	82503600	82504600	+	900.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025245, intron 2 of 3)	intron (NM_001025245, intron 2 of 3)	28977.0	NM_010777	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115317161-4	chr6	115316677	115317677	+	900.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43774.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108526856-4	chr6	108526359	108527359	+	900.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 60 of 61)	MTD|LTR|ERVL-MaLR	37116.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.0	3.0	2.5	0.0	4.0	0.0
Merged-chr16-87435818-2	chr16	87435318	87436318	+	900.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016924, intron 4 of 4)	RMER17B|LTR|ERVK	-3212.0	NM_001081068	78913.0	Mm.249005	NM_001081068	ENSMUSG00000052299	Ltn1	4930528H02Rik|AV266914|C87237|Listerin|Rnf160|Zfp294	listerin E3 ubiquitin protein ligase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155902209-2	chr1	155901712	155902712	+	900.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_001039184, intron 23 of 37)	intron (NM_001039184, intron 23 of 37)	71043.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	80.5	255.5	172.0	17.0	33.0	37.5
Merged-chr10-111957906-4	chr10	111957416	111958416	+	899.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14779.0	NM_178610	52705.0	Mm.34606	NM_178610	ENSMUSG00000063334	Krr1	2610511F02Rik|AI255219|AI428520|D10Ertd773e|Hrb2	KRR1, small subunit (SSU) processome component, homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51156814-4	chr3	51156331	51157331	+	899.962524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67616.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	3.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51859385-4	chr3	51858898	51859898	+	899.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	198219.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97557144-4	chr11	97556647	97557647	+	899.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 1 of 19)	intron (NM_018873, intron 1 of 19)	17979.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95333425-4	chr11	95332918	95333918	+	899.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3600.0	NM_172543	215512.0	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr14-25483462-4	chr14	25482969	25483969	+	899.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	24284.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95612388-4	chr9	95611905	95612905	+	899.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-25223.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146946090-4	chr3	146945594	146946594	+	899.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302957, intron 18 of 21)	intron (NM_001302957, intron 18 of 21)	93727.0	NM_001302957	70892.0	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-130867440-4	chr7	130866931	130867931	+	899.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133942, intron 1 of 9)	intron (NM_133942, intron 1 of 9)	1707.0	NM_001346515	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13300386-3	chr9	13299900	13300900	+	899.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53444.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	0.0	0.0	0.0	0.0	1.5	0.0
Merged-chr4-155802817-4	chr4	155802301	155803301	+	899.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025570)	promoter-TSS (NM_025570)	-77.0	NM_025570	66448.0	Mm.23825	NM_025570	ENSMUSG00000029066	Mrpl20	2610008D01Rik|4930425I20Rik	mitochondrial ribosomal protein L20	protein-coding	26.5	78.0	53.5	23.0	41.5	52.0
Merged-chr17-69204785-4	chr17	69204268	69205268	+	899.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	Lx8b|LINE|L1	45412.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157424167-4	chr2	157423659	157424659	+	899.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009271)	promoter-TSS (NM_009271)	-134.0	NM_009271	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101379120-6	chr7	101378617	101379617	+	899.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040112, intron 1 of 30)	intron (NM_001040112, intron 1 of 30)	995.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	5.0	30.5	13.0	14.0	33.5	22.0
Merged-chr9-51076594-3	chr9	51076071	51077071	+	899.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033534, intron 1 of 7)	intron (NM_001033534, intron 1 of 7)	523.0	NM_001033534	244864.0	Mm.335152	NM_001033534	ENSMUSG00000060594	Layn	E030012M19Rik|Gm511	layilin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-99132576-4	chr11	99132074	99133074	+	899.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22503.0	NM_001301713	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3890950-2	chr12	3890450	3891450	+	899.900024	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153743)	promoter-TSS (NM_153743)	-794.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152043664-3	chr1	152043169	152044169	+	899.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 1 of 5)	intron (NM_197990, intron 1 of 5)	46651.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36493706-3	chr18	36493214	36494214	+	899.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22091.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	2.5	19.5	12.0	16.5	21.0	10.5
Merged-chr11-8634864-4	chr11	8634352	8635352	+	899.8833619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	29683.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116010768-4	chr6	116010266	116011266	+	899.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15761.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29514538-4	chr11	29514060	29515060	+	899.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163454, intron 1 of 2)	B3A|SINE|B2	473.0	NM_026465	67939.0	Mm.251087	NM_026465	ENSMUSG00000032673	Prorsd1	2010316F05Rik|Ncrna00117|Prdxdd1	prolyl-tRNA synthetase domain containing 1	protein-coding	10.0	53.5	44.5	12.0	36.0	32.5
Merged-chr15-81077759-4	chr15	81077274	81078274	+	899.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	B3A|SINE|B2	27273.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152540004-4	chr1	152539503	152540503	+	899.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001346119, exon 10 of 18)	exon (NM_001346119, exon 10 of 18)	85214.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31394987-4	chr14	31394479	31395479	+	899.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	22698.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11070184-5	chr16	11069690	11070690	+	899.8350220000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009223, intron 1 of 1)	intron (NM_009223, intron 1 of 1)	3892.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-125113259-2	chr4	125112759	125113759	+	899.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001290701)	TTS (NM_001290701)	14622.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.0	2.0	0.5	0.0	0.0	1.5
Merged-chr8-33384346-3	chr8	33383822	33384822	+	899.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122822, intron 1 of 33)	intron (NM_001122822, intron 1 of 33)	1205.0	NM_001122822	22427.0	Mm.228805	NM_011721	ENSMUSG00000031583	Wrn	AI846146	Werner syndrome RecQ like helicase	protein-coding	47.5	76.0	51.5	46.0	93.0	34.0
Merged-chr1-165647272-2	chr1	165646772	165647772	+	899.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-12731.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72990400-3	chr6	72989892	72990892	+	899.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31644.0	NM_001190327	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	1.0	13.5	2.5	0.0	21.5	1.5
Merged-chr14-74976509-3	chr14	74976012	74977012	+	899.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046078, intron 2 of 2)	intron (NR_046078, intron 2 of 2)	1426.0	NR_046078	100043169.0	Mm.145900	NR_046078	ENSMUSG00000115019	Gm4278	-	predicted gene 4278	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138216378-4	chr4	138215876	138216876	+	899.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122896)	promoter-TSS (NM_001122896)	-236.0	NM_001122896	15441.0	Mm.348429	NM_010470	ENSMUSG00000028759	Hp1bp3	Hp1bp74	heterochromatin protein 1, binding protein 3	protein-coding	3.0	21.0	20.5	17.0	27.0	37.0
Merged-chr17-33503682-3	chr17	33503188	33504188	+	899.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20397.0	NR_137628	224697.0	Mm.29304	NM_172619	ENSMUSG00000024299	Adamts10	9430006O18|AW045948|Adam-ts10|Adamts-10|Znmp	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr7-102496853-3	chr7	102496351	102497351	+	899.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-2078.0	NM_146840	258837.0	Mm.377714	NM_146840	ENSMUSG00000044824	Olfr545	MOR42-1|S50	olfactory receptor 545	protein-coding	2.5	2.0	4.0	11.0	1.5	5.5
Merged-chr8-128602104-4	chr8	128601547	128602547	+	899.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83607.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	3.0	1.0	5.0	0.0	3.0	3.5
Merged-chr1-92666168-4	chr1	92665530	92666530	+	899.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17189.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95800309-4	chr15	95799796	95800796	+	899.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	Lx8|LINE|L1	9453.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94785889-4	chr8	94785369	94786369	+	899.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13689.0	NM_009142	20312.0	Mm.103711	NM_009142	ENSMUSG00000031778	Cx3cl1	AB030188|ABCD-3|AI848747|CX3C|Cxc3|D8Bwg0439e|Scyd1	chemokine (C-X3-C motif) ligand 1	protein-coding	2.5	0.0	5.0	0.5	1.5	3.0
Merged-chr3-97824904-4	chr3	97824420	97825420	+	899.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 3 of 46)	intron (NM_001039376, intron 3 of 46)	-56906.0	NR_110360	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87755098-4	chr16	87754596	87755596	+	899.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56142.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71370845-3	chr8	71370347	71371347	+	899.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029865)	promoter-TSS (NM_029865)	-451.0	NM_029865	77090.0	Mm.440170	NM_029865	ENSMUSG00000002396	Ocel1	9430098E02Rik|AI326022|AI593544	occludin/ELL domain containing 1	protein-coding	15.0	80.5	37.0	19.5	59.0	16.5
Merged-chr1-132135801-3	chr1	132135308	132136308	+	899.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008795, intron 1 of 15)	intron (NM_008795, intron 1 of 15)	3877.0	NM_008795	18557.0	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180199687-3	chr1	180199180	180200180	+	899.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-3660.0	NM_001359268	67426.0	Mm.38330	NM_023341	ENSMUSG00000026489	Coq8a	4632432J16Rik|AI462003|Adck3|Cabc1|mKIAA0451	coenzyme Q8A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117317158-4	chr11	117316645	117317645	+	899.770874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-14570.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181411269-4	chr2	181410769	181411769	+	899.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028125, exon 3 of 3)	3' UTR (NM_028125, exon 3 of 3)	13119.0	NM_027656	72147.0	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38456803-4	chr16	38456339	38457339	+	899.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2094.0	NM_001359898	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22007640-2	chr16	22007140	22008140	+	899.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-1844.0	NM_029457	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25914106-4	chr17	25913617	25914617	+	899.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139154, intron 2 of 6)	intron (NM_139154, intron 2 of 6)	5597.0	NM_139154	224624.0	Mm.328872	NM_139154	ENSMUSG00000025730	Rab40c	RAR3	Rab40C, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125513635-4	chr8	125513199	125514199	+	899.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 2 of 21)	intron (NM_001357372, intron 2 of 21)	-20866.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	34.0	65.5	21.5	33.5	16.0	8.0
Merged-chr4-110351716-4	chr4	110351205	110352205	+	899.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163397, intron 1 of 5)	CpG	206.0	NM_001163397	15572.0	Mm.3970	NM_010488	ENSMUSG00000028546	Elavl4	Elav|Hud|PNEM	ELAV like RNA binding protein 4	protein-coding	0.0	0.0	0.0	2.0	0.0	0.0
Merged-chr4-32179941-4	chr4	32179456	32180456	+	899.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	215849.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	0.0	1.5	1.0	4.5	1.5	0.5
Merged-chr16-55837204-2	chr16	55836704	55837704	+	899.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159395, intron 1 of 12)	(CAAA)n|Simple_repeat|Simple_repeat	1437.0	NM_030612	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32229438-3	chr4	32228930	32229930	+	899.744446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-188005.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-113637852-3	chr7	113637331	113638331	+	899.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-72844.0	NR_126544	69295.0	Mm.396150	NR_126544	ENSMUSG00000084984	Far1os	1700006P19Rik	fatty acyl CoA reductase 1, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-87441448-4	chr12	87440967	87441967	+	899.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102565, intron 1 of 5)	intron (NM_001102565, intron 1 of 5)	2372.0	NM_001102565	211064.0	Mm.486235	NM_001102565	ENSMUSG00000079036	Alkbh1	2700073G19Rik|Abh|Alkbh|alkB|hABH	alkB homolog 1, histone H2A dioxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-139037318-4	chr1	139036821	139037821	+	899.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166501, intron 3 of 21)	intron (NM_001166501, intron 3 of 21)	59664.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-16950139-4	chr11	16949648	16950648	+	899.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110421, intron 2 of 5)	MTD|LTR|ERVL-MaLR	1134.0	NR_110421	72735.0	Mm.268598	NR_015469		Eldr	2810442I21Rik|4930500E12Rik|Fabl	Egfr long non-coding downstream RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-89227963-4	chr9	89227449	89228449	+	899.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359993, intron 2 of 2)	URR1B|DNA|hAT-Charlie	16565.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	7.5	31.5	35.0	14.0	22.0	19.0
Merged-chr1-64080415-4	chr1	64079880	64080880	+	899.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	-37879.0	NR_105864	102466760.0		NR_105864	ENSMUSG00000098487	Mir6899	Gm27384|mmu-mir-6899	microRNA 6899	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148114931-4	chr4	148114415	148115415	+	899.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027426, intron 2 of 6)	intron (NM_027426, intron 2 of 6)	15783.0	NM_027426	70433.0	Mm.275288	NM_027426	ENSMUSG00000029005	Draxin	2610109H07Rik|neucrin	dorsal inhibitory axon guidance protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144452826-3	chr2	144452316	144453316	+	899.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6464.0	NR_033459	668917.0	Mm.152805	NR_033459	ENSMUSG00000083674	Zfp133-ps	Zfp133	zinc finger protein 133, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-16044887-3	chr4	16044386	16045386	+	899.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie2b|DNA|hAT-Charlie	-30998.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-66768928-3	chr4	66768424	66769424	+	899.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58627.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0.5	0.0	0.0	0.0	0.0	1.0
Merged-chr5-149068392-4	chr5	149067885	149068885	+	899.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15328.0	NM_010439	15289.0	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	1.5	10.0	2.5	2.0	3.0	5.0
Merged-chr11-16525095-3	chr11	16524602	16525602	+	899.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16618.0	NM_001109971	20335.0	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145029811-4	chr7	145029323	145030323	+	899.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89898.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	12.5	30.5	20.5	12.5	22.0	11.5
Merged-chr17-50580655-2	chr17	50580155	50581155	+	899.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	71108.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	30.0	42.0	34.0	30.5	81.0	30.0
Merged-chr1-43934768-3	chr1	43934249	43935249	+	899.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009418, intron 1 of 29)	intron (NM_009418, intron 1 of 29)	755.0	NM_009418	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-109294590-3	chr13	109294085	109295085	+	899.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-30159.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35558313-3	chr9	35557828	35558828	+	899.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023292)	promoter-TSS (NM_023292)	142.0	NM_013932	30959.0	Mm.291723	NM_013932	ENSMUSG00000032101	Ddx25	AW047046|GRTH	DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72162779-3	chr6	72162270	72163270	+	899.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39573.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173973392-3	chr1	173972908	173973908	+	899.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008327, intron 3 of 6)	intron (NM_008327, intron 3 of 6)	9436.0	NM_008327	26388.0	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	10.0	13.5	4.5	10.0	16.0	19.0
Merged-chr5-31699651-3	chr5	31699142	31700142	+	899.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181280, intron 1 of 12)	intron (NM_181280, intron 1 of 12)	1592.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25843721-3	chr15	25843224	25844224	+	899.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 1 of 8)	intron (NM_001034851, intron 1 of 8)	426.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112552227-4	chr12	112551745	112552745	+	899.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36539.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-157560830-3	chr1	157560324	157561324	+	899.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027641, exon 20 of 27)	non-coding (NR_027641, exon 20 of 27)	34654.0	NM_001159986	89867.0	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding	0.0	5.0	0.0	0.0	4.0	0.0
Merged-chr13-69810384-4	chr13	69809875	69810875	+	899.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138596, intron 1 of 3)	intron (NM_138596, intron 1 of 3)	493.0	NM_138596	28077.0	Mm.52583	NM_138596	ENSMUSG00000021598	Med10	AA959813|AI385605|C78613|D13Wsu50e	mediator complex subunit 10	protein-coding	4.0	20.0	25.5	4.0	25.5	5.5
Merged-chr4-84977063-3	chr4	84976563	84977563	+	899.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175275, intron 7 of 25)	Lx8b|LINE|L1	92754.0	NM_177385	338349.0	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	0.0	0.5	0.0	0.0	2.5	0.5
Merged-chr14-62252171-4	chr14	62251671	62252671	+	899.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40808.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8687910-2	chr4	8687410	8688410	+	899.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2496.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115367006-4	chr6	115366508	115367508	+	899.662476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 1 of 7)	intron (NM_001308354, intron 1 of 7)	4659.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124316143-3	chr6	124315651	124316651	+	899.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170395, intron 6 of 16)	intron (NM_001170395, intron 6 of 16)	11500.0	NM_053094	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-56840917-4	chr10	56840415	56841415	+	899.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	408934.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-16506864-4	chr5	16506379	16507379	+	899.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46616.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77663942-4	chr18	77663421	77664421	+	899.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178670, intron 2 of 4)	Tigger7|DNA|TcMar-Tigger	50089.0	NM_178670	212163.0	Mm.23293	NM_178670	ENSMUSG00000047466	8030462N17Rik	Akd2|Ark2N	RIKEN cDNA 8030462N17 gene	protein-coding	2.0	0.0	2.5	9.5	4.5	3.5
Merged-chr2-71405834-3	chr2	71405309	71406309	+	899.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026115, intron 2 of 10)	B1F|SINE|Alu	-8667.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118584669-3	chr7	118584187	118585187	+	899.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172476)	promoter-TSS (NM_172476)	-1.0	NM_172476	209760.0	Mm.69380	NM_172476	ENSMUSG00000042246	Tmc7	1700030H01Rik|C230064B05|C630024K23Rik	transmembrane channel-like gene family 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67973869-4	chr18	67973379	67974379	+	899.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	40706.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.0	5.5	1.5	0.0	0.0	2.5
Merged-chr16-38091956-4	chr16	38091432	38092432	+	899.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 1 of 11)	intron (NM_001347232, intron 1 of 11)	-2672.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	44.5	51.5	60.0	43.0	51.5	59.0
Merged-chr15-78771928-4	chr15	78771434	78772434	+	899.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008595, intron 1 of 7)	intron (NM_008595, intron 1 of 7)	1511.0	NM_008595	17305.0	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	23.0	21.5	26.5	18.0	21.0	29.0
Merged-chr6-116123457-4	chr6	116122964	116123964	+	899.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	MERVL_2A-int|LTR|ERVL	69910.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-84171473-4	chr7	84170943	84171943	+	899.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19550.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-56134562-4	chr4	56134078	56135078	+	899.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-602103.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148520937-4	chr2	148520421	148521421	+	899.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77386.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	5.0	11.0	3.5	4.0	13.5	11.5
Merged-chr12-104067606-4	chr12	104067115	104068115	+	899.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10344.0	NR_002861	321018.0	Mm.297023	NR_002861		Serpina4-ps1	KALps|Klst	serine (or cysteine) peptidase inhibitor, clade A, member 4, pseudogene 1	pseudo	50.0	78.5	87.5	15.0	15.0	16.0
Merged-chr3-89421602-4	chr3	89421123	89422123	+	899.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113331)	promoter-TSS (NM_001113331)	2.0	NM_001113331	20416.0	Mm.86595	NM_011368	ENSMUSG00000042626	Shc1	Shc|ShcA|p66|p66shc	src homology 2 domain-containing transforming protein C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90263077-3	chr9	90262581	90263581	+	899.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	7688.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124271275-4	chr6	124270778	124271778	+	899.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33373.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-111159494-4	chr11	111159011	111160011	+	899.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93347.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	21.0	11.5	12.5	26.0	13.5	12.5
Merged-chr7-119920640-4	chr7	119920164	119921164	+	899.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20553.0	NR_126475	73919.0	Mm.46381	NM_029610	ENSMUSG00000030922	Lyrm1	1110065L10Rik|2310004B22Rik|4930404J24Rik	LYR motif containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75229227-4	chr10	75228735	75229735	+	899.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145826, intron 3 of 18)	URR1A|DNA|hAT-Charlie	16845.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152087903-4	chr4	152087367	152088367	+	899.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104381, intron 2 of 21)	intron (NR_104381, intron 2 of 21)	1004.0	NR_104381	269608.0	Mm.332102	NM_001004156	ENSMUSG00000039713	Plekhg5	BC023181|Syx	pleckstrin homology domain containing, family G (with RhoGef domain) member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-30408888-4	chr10	30408387	30409387	+	899.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	191813.0	NM_028604	73681.0	Mm.294503	NM_028604	ENSMUSG00000019792	Trmt11	2410075D05Rik|3110045I18Rik|AW213713	tRNA methyltransferase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41777012-3	chr19	41776507	41777507	+	899.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027667, intron 9 of 11)	L1MB2|LINE|L1	25077.0	NM_001163495	71085.0	Mm.21646	NM_027667	ENSMUSG00000025154	Arhgap19	4933411B03Rik|AI120128|AW546831|mFLJ00368	Rho GTPase activating protein 19	protein-coding	59.5	162.5	123.0	33.5	44.5	58.5
Merged-chr19-6261160-2	chr19	6260660	6261660	+	899.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_194348, intron 38 of 39)	B3A|SINE|B2	-3483.0	NR_029830	723957.0		NR_029830	ENSMUSG00000065582	Mir194-2	Mirn194-2|mir-194-2	microRNA 194-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75655904-4	chr7	75655418	75656418	+	899.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 8 of 36)	L1M4|LINE|L1	-192420.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	30.0	112.0	89.5	20.5	79.0	89.5
Merged-chr7-140946102-2	chr7	140945602	140946602	+	899.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145387, intron 10 of 13)	intron (NM_145387, intron 10 of 13)	4137.0	NM_053088	73835.0	Mm.389989	NM_053088	ENSMUSG00000025489	Ifitm5	1110003J06Rik|AW213665|Bril|DSPA1|Hrmp1|Hrtm1	interferon induced transmembrane protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-26607967-3	chr19	26607447	26608447	+	899.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011416, intron 1 of 32)	intron (NM_011416, intron 1 of 32)	2787.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr15-100621896-2	chr15	100621396	100622396	+	899.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_174992, exon 4 of 4)	exon (NM_174992, exon 4 of 4)	6234.0	NM_011873	23994.0	Mm.486175	NM_011873	ENSMUSG00000000346	Dazap2	AI314727|Brbp|Gcap28|Prtb|gt6-12|mKIAA0058	DAZ associated protein 2	protein-coding	7.5	34.5	41.0	24.0	28.5	37.0
Merged-chr4-136172192-4	chr4	136171695	136172695	+	899.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177733)	promoter-TSS (NM_177733)	-79.0	NM_177733	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-41053512-4	chr8	41052958	41053958	+	899.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 3 of 13)	intron (NM_001005863, intron 3 of 13)	1338.0	NM_001005864	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	8.0	7.5	8.5	11.5	13.5	2.5
Merged-chr3-132747223-2	chr3	132746723	132747723	+	899.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163455, intron 20 of 25)	intron (NM_001163455, intron 20 of 25)	63079.0	NM_001163455	271981.0	Mm.257864	NM_173032	ENSMUSG00000028030	Tbck	1700120J03Rik|9430001M19|A630047E20Rik|C030007I09Rik|Tbckl	TBC1 domain containing kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48249286-2	chr17	48248786	48249786	+	899.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021407, intron 1 of 3)	intron (NM_021407, intron 1 of 3)	1557.0	NM_021407	58218.0	Mm.302438	NM_021407	ENSMUSG00000041754	Trem3	BB134760	triggering receptor expressed on myeloid cells 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114414671-2	chr7	114414171	114415171	+	899.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011055)	promoter-TSS (NM_011055)	490.0	NR_029437	71045.0	Mm.235682	NR_029437	ENSMUSG00000087475	4933406I18Rik	4933403D24Rik	RIKEN cDNA 4933406I18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-82772841-3	chr6	82772343	82773343	+	899.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 1 of 17)	intron (NM_013820, intron 1 of 17)	1611.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36276820-2	chr1	36276320	36277320	+	899.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-3395.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20961695-4	chr9	20961205	20962205	+	899.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1817.0	NM_001199432	13433.0	Mm.128580	NM_010066	ENSMUSG00000004099	Dnmt1	Cxxc9|Dnmt|Dnmt1o|MCMT|MTase|Met-1|Met1|MommeD2|m.MmuI	DNA methyltransferase (cytosine-5) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-100430518-4	chr3	100429994	100430994	+	899.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040543, intron 2 of 2)	intron (NR_040543, intron 2 of 2)	4089.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20294179-2	chr14	20293679	20294679	+	899.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359868)	promoter-TSS (NM_001359868)	-511.0	NM_001359870	67725.0	Mm.317636	NM_026341	ENSMUSG00000021809	Nudt13	4933433B15Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27193955-2	chr7	27193455	27194455	+	899.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285825, intron 2 of 6)	intron (NM_001285825, intron 2 of 6)	1805.0	NM_001046637	53607.0	Mm.386890	NM_015782	ENSMUSG00000061479	Snrpa	C430021M15Rik|Rnu1a-1|Rnu1a1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding	0.0	5.5	0.0	0.0	1.0	2.5
Merged-chr13-107114211-3	chr13	107113750	107114750	+	899.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91680.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74981606-4	chr11	74981036	74982036	+	899.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 8 of 18)	intron (NM_001002764, intron 8 of 18)	55664.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-79590631-4	chr18	79590126	79591126	+	899.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-456269.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	13.5	2.5	10.0	10.5	7.0	5.0
Merged-chr19-53895011-4	chr19	53894512	53895512	+	899.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011050, intron 1 of 11)	intron (NM_011050, intron 1 of 11)	2781.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0.5	5.0	10.5	4.5	13.5	8.5
Merged-chr2-6705056-3	chr2	6704533	6705533	+	899.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	16629.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79362583-4	chr8	79362082	79363082	+	899.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 2 of 6)	L2c|LINE|L2	36886.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157371611-7	chr2	157371058	157372058	+	899.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026968, intron 1 of 2)	ID_B1|SINE|B4	3964.0	NM_026968	69161.0	Mm.228619	NM_026968	ENSMUSG00000063019	Manbal	1810024K12Rik|AI836500	mannosidase, beta A, lysosomal-like	protein-coding	2.5	4.0	10.0	1.5	17.0	11.0
Merged-chr7-35121083-11	chr7	35120535	35121535	+	899.420227	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001287523, exon 1 of 1)	3' UTR (NM_001287523, exon 1 of 1)	1742.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	31.5	104.0	93.5	31.0	105.5	93.5
Merged-chr10-37139351-4	chr10	37138840	37139840	+	899.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008538)	promoter-TSS (NM_008538)	-414.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120783185-2	chr6	120782685	120783685	+	899.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081048, intron 1 of 9)	intron (NM_001081048, intron 1 of 9)	9417.0	NM_001081048	71803.0	Mm.425340	NM_001081048	ENSMUSG00000004902	Slc25a18	1500015I14Rik|AW125787	solute carrier family 25 (mitochondrial carrier), member 18	protein-coding	12.5	14.5	5.5	1.0	6.0	4.0
Merged-chr10-67712007-4	chr10	67711494	67712494	+	899.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140035.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-57237197-4	chr12	57236697	57237697	+	899.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164370, intron 1 of 9)	Lx9|LINE|L1	6772.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-6191539-2	chr7	6191039	6192039	+	899.416626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001146024, exon 5 of 5)	3' UTR (NM_001146024, exon 5 of 5)	-5551.0	NM_178028	232836.0	Mm.246599	NM_178028	ENSMUSG00000034660	Galp	-	galanin-like peptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7260617-3	chr10	7260092	7261092	+	899.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48355.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	4.0	8.5	8.0	16.0	23.0	21.5
Merged-chr11-43600094-4	chr11	43599576	43600576	+	899.3875119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008375, intron 1 of 3)	intron (NM_008375, intron 1 of 3)	1486.0	NM_008375	16204.0	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-121014756-4	chr4	121014253	121015253	+	899.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	2494.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32693947-4	chr18	32693448	32694448	+	899.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045381, intron 4 of 4)	intron (NR_045381, intron 4 of 4)	-121435.0	NM_021367	53603.0	Mm.143716	NM_021367	ENSMUSG00000024379	Tslp	-	thymic stromal lymphopoietin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120226648-4	chr7	120226137	120227137	+	899.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026458, intron 9 of 30)	intron (NM_026458, intron 9 of 30)	22673.0	NM_026458	67928.0	Mm.158178	NM_026458	ENSMUSG00000062017	Abca14	1700110B15Rik|4930539G24Rik	ATP-binding cassette, sub-family A (ABC1), member 14	protein-coding	0.5	2.0	0.5	0.0	5.5	1.0
Merged-chr8-67506575-4	chr8	67506079	67507079	+	899.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER3D-int|LTR|ERVK	11631.0	NM_010874	17961.0	Mm.4695	NM_010874	ENSMUSG00000051147	Nat2	AV377607	N-acetyltransferase 2 (arylamine N-acetyltransferase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35119746-4	chr18	35119239	35120239	+	899.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009818, intron 1 of 17)	intron (NM_009818, intron 1 of 17)	827.0	NM_009818	12385.0	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-24541004-4	chr8	24540475	24541475	+	899.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145949, intron 7 of 9)	intron (NM_145949, intron 7 of 9)	35358.0	NM_145949	209176.0	Mm.219580	NM_145949	ENSMUSG00000031549	Ido2	AI265623|C230043N17Rik|Ido-2|Indol1	indoleamine 2,3-dioxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62023315-4	chr18	62022807	62023807	+	899.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70232.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	12.5	0.0	0.5	12.5	0.0	0.5
Merged-chr3-52391287-4	chr3	52390765	52391765	+	899.354126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122928.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-84919534-2	chr11	84919034	84920034	+	899.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3168.0	NM_001005223	448850.0	Mm.379733	NM_001005223	ENSMUSG00000020526	Znhit3	Myohd1|TRIP-3|Trip3	zinc finger, HIT type 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40344927-3	chr9	40344427	40345427	+	899.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 2 of 20)	intron (NM_001357617, intron 2 of 20)	1318.0	NM_001357623	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.0	0.0	2.5	0.5	7.5	9.5
Merged-chr5-81156891-4	chr5	81156376	81157376	+	899.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198702, intron 2 of 27)	intron (NM_198702, intron 2 of 27)	135283.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	1.5	0.0	0.0	1.0	0.0	0.0
Merged-chr7-88318751-4	chr7	88318285	88319285	+	899.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	40700.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	12.0	27.5	12.0	16.0	15.5	19.5
Merged-chr16-76220581-3	chr16	76220079	76221079	+	899.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR90A|LTR|LTR	97966.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-3907382-3	chr13	3906895	3907895	+	899.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019671, intron 3 of 11)	intron (NM_019671, intron 3 of 11)	10825.0	NM_019671	56349.0	Mm.22261	NM_019671	ENSMUSG00000021215	Net1	Net1a|mNET1	neuroepithelial cell transforming gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10287596-3	chr19	10287099	10288099	+	899.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	MLTR14|LTR|ERV1	17278.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-30620063-4	chr10	30619568	30620568	+	899.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1702.0	NM_025798	66847.0	Mm.46218	NM_025798	ENSMUSG00000019791	Hint3	0610010I17Rik|AV009015|HINT-3|HINT-4|HINT4	histidine triad nucleotide binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84752874-3	chr12	84752371	84753371	+	899.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20241.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56535221-3	chr19	56534716	56535716	+	899.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153440, intron 8 of 9)	L1MB7|LINE|L1	12906.0	NM_001360437	55947.0	Mm.2805	NM_018831	ENSMUSG00000025077	Dclre1a	2810043H12Rik|AU022226|Pso2|Smn1a|Snm1|mKIAA0086	DNA cross-link repair 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16436129-3	chr19	16435607	16436607	+	899.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008137, exon 1 of 7)	5' UTR (NM_008137, exon 1 of 7)	440.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-3037988-3	chr9	3037477	3038477	+	899.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_039546)	TTS (NR_039546)	766.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27315500-3	chr14	27314970	27315970	+	899.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 2 of 10)	G-rich|Low_complexity|Low_complexity	-20567.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.0	9.5	0.5	0.0	0.0	1.0
Merged-chr10-60753358-2	chr10	60752858	60753858	+	899.3333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023596)	promoter-TSS (NM_023596)	-576.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21511232-3	chr9	21510787	21511787	+	899.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1053.0	NR_136911	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123720553-3	chr5	123720051	123721051	+	899.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027494, intron 1 of 13)	CpG	493.0	NM_027494	70650.0	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	8.5	52.0	34.0	9.5	28.0	26.0
Merged-chr13-23760258-4	chr13	23759764	23760764	+	899.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178192)	TTS (NM_178192)	985.0	NM_178192	326619.0	Mm.228709	NM_178192	ENSMUSG00000060093	Hist1h4a	-	histone cluster 1, H4a	protein-coding	17.0	58.5	30.0	22.5	65.0	43.0
Merged-chr1-152571559-4	chr1	152571043	152572043	+	899.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 4 of 17)	intron (NM_016846, intron 4 of 17)	53674.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160598065-4	chr2	160597569	160598569	+	899.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47828.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152597639-3	chr1	152597156	152598156	+	899.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	27561.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-164681810-4	chr1	164681323	164682323	+	899.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114840.0	NM_019759	56429.0	Mm.28935	NM_019759	ENSMUSG00000026574	Dpt	1810032B19Rik|5033416F05Rik|EQ-1|Eq1	dermatopontin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61579083-2	chr11	61578583	61579583	+	899.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252188, intron 1 of 10)	CpG	604.0	NM_010148	13855.0	Mm.139695	NM_010148	ENSMUSG00000001036	Epn2	9530051D10Rik|AA536924|Ibp2	epsin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95986067-4	chr3	95985592	95986592	+	899.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045872, intron 2 of 2)	intron (NR_045872, intron 2 of 2)	582.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	73.0	144.0	105.5	87.0	252.0	132.5
Merged-chr5-145232759-4	chr5	145232258	145233258	+	899.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028298, intron 1 of 3)	intron (NM_028298, intron 1 of 3)	999.0	NM_028298	72611.0	Mm.206555	NM_028298	ENSMUSG00000007812	Zfp655	2700038I16Rik|9030409O18Rik|mKIAA4222	zinc finger protein 655	protein-coding	18.0	43.0	29.0	18.0	36.5	31.5
Merged-chr17-56469017-4	chr17	56468529	56469529	+	899.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252455, intron 1 of 27)	intron (NM_001252455, intron 1 of 27)	-6808.0	NM_001252456	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75019567-4	chr18	75019062	75020062	+	899.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027727, intron 1 of 16)	intron (NM_027727, intron 1 of 16)	790.0	NM_027727	69190.0	Mm.173826	NM_027727	ENSMUSG00000035765	Dym	1810041M12Rik|4933427L07Rik|C030019K18Rik	dymeclin	protein-coding	8.0	16.5	11.5	7.0	14.5	10.5
Merged-chr8-110998367-4	chr8	110997856	110998856	+	899.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007916)	promoter-TSS (NM_007916)	-533.0	NM_007916	13680.0	Mm.287901	NM_007916	ENSMUSG00000015023	Ddx19a	DBP5|Ddx19|Eif4a-rs1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a	protein-coding	32.5	91.0	71.0	42.5	74.0	78.5
Merged-chr19-5718216-2	chr19	5717707	5718707	+	899.25	f0_c57.idr|f1_c57bl6.idr	exon (NM_001114597, exon 9 of 19)	exon (NM_001114597, exon 9 of 19)	8110.0	NM_001114595	114601.0	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	11.5	43.5	48.5	9.5	23.5	10.5
Merged-chr11-115354454-2	chr11	115353954	115354954	+	899.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001346774, exon 12 of 19)	exon (NM_001346774, exon 12 of 19)	13265.0	NM_175454	217310.0	Mm.205707	NM_175454	ENSMUSG00000034586	Hid1	C630004H02Rik	HID1 domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27721260-4	chr2	27720780	27721780	+	899.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	10697.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191068600-4	chr1	191068083	191069083	+	899.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198654, intron 2 of 5)	intron (NM_198654, intron 2 of 5)	5562.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	6.0	7.5	39.5	6.5	8.0	9.0
Merged-chr7-81161911-2	chr7	81161411	81162411	+	899.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004184, intron 12 of 17)	B2_Mm2|SINE|B2	47112.0	NM_001004184	434203.0	Mm.389909	NM_001004184	ENSMUSG00000025726	Slc28a1	Cnt1	solute carrier family 28 (sodium-coupled nucleoside transporter), member 1	protein-coding	1.0	0.0	0.0	0.0	0.0	2.0
Merged-chr15-6337255-4	chr15	6336777	6337777	+	899.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	37488.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13466596-4	chr9	13466098	13467098	+	899.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35237.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	46.0	65.0	49.5	24.0	77.5	77.0
Merged-chr9-104261513-4	chr9	104260952	104261952	+	899.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 1 of 56)	intron (NM_001359740, intron 1 of 56)	1478.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78263390-3	chr11	78262910	78263910	+	899.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002004, intron 2 of 38)	intron (NM_001002004, intron 2 of 38)	1656.0	NM_001002004	72503.0	Mm.237103	NM_001002004	ENSMUSG00000010277	2610507B11Rik	AU022687|D11Bhm178e|D11Bhm179e|E1|Kiaa0100|mKIAA0100	RIKEN cDNA 2610507B11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45395604-4	chr13	45394999	45395999	+	899.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153789, intron 2 of 6)	intron (NM_153789, intron 2 of 6)	5757.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	1.5	0.0	4.0	1.0	19.5	5.5
Merged-chr2-84476783-3	chr2	84476301	84477301	+	899.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177320)	promoter-TSS (NM_001177320)	-26.0	NM_001177320	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	4.5	10.5	3.0	1.0	4.0	1.0
Merged-chr5-105652084-3	chr5	105651591	105652591	+	899.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47878.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	9.0	10.0	15.5	28.5	65.0	34.5
Merged-chr8-68456860-4	chr8	68456310	68457310	+	899.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172753, intron 4 of 9)	RMER16_Mm|LTR|ERVK	88351.0	NR_038181	73609.0	Mm.443247	NR_038181	ENSMUSG00000085197	1700125H03Rik	4930510D22Rik	RIKEN cDNA 1700125H03 gene	ncRNA	0.0	0.0	1.5	0.0	0.0	2.0
Merged-chr15-91169123-3	chr15	91168597	91169597	+	899.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011994, intron 6 of 9)	Lx|LINE|L1	22910.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-104042916-4	chr5	104042460	104043460	+	899.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-3904.0	NM_028794	74167.0	Mm.241484	NM_028794	ENSMUSG00000029310	Nudt9	1190002C07Rik|ADPR-PPase|AI462474	nudix (nucleoside diphosphate linked moiety X)-type motif 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5589789-2	chr17	5589289	5590289	+	899.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	97189.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-69776082-2	chr14	69775582	69776582	+	899.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_020275, exon 5 of 8)	exon (NM_020275, exon 5 of 8)	8610.0	NM_020275	21933.0	Mm.193430	NM_020275	ENSMUSG00000022074	Tnfrsf10b	DR5|KILLER|Ly98|MK|TRAILR2|TRICK2A|TRICK2B|TRICKB	tumor necrosis factor receptor superfamily, member 10b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60813319-8	chr18	60812681	60813681	+	899.1510619999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001198984)	TTS (NM_001198984)	1105.0	NR_039567	100628611.0		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	12.5	25.5	2.0	1.5	10.5	4.5
Merged-chr1-191184736-7	chr1	191184216	191185216	+	899.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1383.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.0	1.0	0.5	0.0	18.5	4.0
Merged-chr4-55598204-4	chr4	55597691	55598691	+	899.1416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65716.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	3.5	7.0	4.0	3.5	15.0	1.5
Merged-chr5-123675385-4	chr5	123674892	123675892	+	899.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359224, intron 1 of 18)	intron (NM_001359224, intron 1 of 18)	8969.0	NM_019765	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	42.5	78.5	63.0	19.0	32.0	36.0
Merged-chr1-74362858-4	chr1	74362400	74363400	+	899.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033345, exon 3 of 10)	exon (NM_001033345, exon 3 of 10)	792.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117882010-4	chr11	117881538	117882538	+	899.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8512.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64530874-6	chr1	64530346	64531346	+	899.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-1958.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88390409-6	chr10	88389907	88390907	+	899.0972289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004164, intron 1 of 20)	intron (NM_001004164, intron 1 of 20)	10995.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6288173-4	chr19	6287673	6288673	+	899.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	11277.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116101413-4	chr9	116100919	116101919	+	899.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 5 of 6)	intron (NM_029575, intron 5 of 6)	73944.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	5.0	24.0	11.5	12.5	15.0	19.0
Merged-chr3-121104988-4	chr3	121104484	121105484	+	899.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66711.0	NM_028456	66568.0	Mm.263163	NM_025637	ENSMUSG00000028133	Rwdd3	2510027J23Rik|3110037C01Rik|AI035684|AI662458|Rsume|X2CR1	RWD domain containing 3	protein-coding	0.0	2.0	1.5	0.0	0.0	0.5
Merged-chr13-52980324-4	chr13	52979818	52980818	+	899.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017373, intron 1 of 1)	CpG	721.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	3.5	3.5	1.5	0.0	5.5	0.0
Merged-chr2-72464521-4	chr2	72464043	72465043	+	899.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16C|LTR|ERVK	-11676.0	NM_025866	66953.0	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17774991-4	chr12	17774502	17775502	+	899.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361645, intron 2 of 4)	intron (NM_001361645, intron 2 of 4)	84193.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26696889-3	chr8	26696353	26697353	+	899.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	127570.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	131.5	282.0	229.5	100.0	224.0	150.5
Merged-chr14-118371535-3	chr14	118371032	118372032	+	899.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045624, intron 3 of 5)	intron (NR_045624, intron 3 of 5)	5654.0	NR_045624	73306.0	Mm.362328	NR_045624	ENSMUSG00000099911	1700044C05Rik	-	RIKEN cDNA 1700044C05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54955858-5	chr6	54955407	54956407	+	899.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172729, intron 1 of 11)	intron (NM_172729, intron 1 of 11)	15754.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	33.5	158.5	75.5	17.0	46.0	36.0
Merged-chr15-9774925-4	chr15	9774438	9775438	+	899.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44-int|LTR|ERVK	-26070.0	NM_001305044	320277.0	Mm.127822	NM_177123	ENSMUSG00000072663	Spef2	C230086A09Rik	sperm flagellar 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-51987076-4	chr7	51986594	51987594	+	899.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330607, intron 7 of 7)	intron (NM_001330607, intron 7 of 7)	18620.0	NR_027704	75744.0	Mm.386823	NM_001160345	ENSMUSG00000074093	Svip	1700006C13Rik|6620401M08Rik	small VCP/p97-interacting protein	protein-coding	0.0	0.0	4.5	1.5	2.5	1.0
Merged-chr10-24645346-4	chr10	24644831	24645831	+	899.020874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008813, exon 24 of 25)	exon (NM_008813, exon 24 of 25)	49889.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117910056-6	chr10	117909548	117910548	+	899.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15411.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	51.0	137.5	98.0	99.0	271.5	167.5
Merged-chr11-68467744-1	chr11	68467244	68468244	+	899.0	f0_balb.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	-35275.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103233121-4	chr11	103232611	103233611	+	899.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 6 of 15)	intron (NM_016896, intron 6 of 15)	-14679.0	NM_177801	328019.0	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9006445-2	chr3	9005944	9006944	+	899.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-1721.0	NM_001357075	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	47.5	110.5	76.0	34.0	111.5	90.0
Merged-chr7-45013054-1	chr7	45012554	45013554	+	899.0	f1_balb.idr	promoter-TSS (NR_106021)	promoter-TSS (NR_106021)	-567.0	NR_106021	102466218.0		NR_106021	ENSMUSG00000098839	Mir7054	Gm27557|mmu-mir-7054	microRNA 7054	ncRNA	2.0	0.5	0.0	8.0	0.0	0.0
Merged-chr12-102387893-2	chr12	102387393	102388393	+	899.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 9 of 9)	intron (NM_177620, intron 9 of 9)	51920.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95283461-3	chr3	95282962	95283962	+	899.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_199475, exon 1 of 10)	5' UTR (NM_199475, exon 1 of 10)	527.0	NM_199475	75007.0	Mm.279287	NM_133858	ENSMUSG00000038712	Mindy1	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|Fam63a|cI-40|mKIAA1390|ni	MINDY lysine 48 deubiquitinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103733966-2	chr3	103733466	103734466	+	899.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4035.0	NM_133859	99543.0	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	1.5	0.0	1.0	0.0	0.0	0.0
Merged-chr1-156939866-2	chr1	156939357	156940357	+	899.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159965)	promoter-TSS (NM_001159965)	-231.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	0.0	0.0	5.5	0.0	1.5	1.0
Merged-chr15-25621666-2	chr15	25621166	25622166	+	899.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019472)	promoter-TSS (NM_019472)	-884.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41484156-3	chr13	41483671	41484671	+	899.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	3189.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-71007058-4	chr12	71006542	71007542	+	899.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045055, intron 3 of 3)	Lx8|LINE|L1	8781.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34657500-4	chr17	34656994	34657994	+	899.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10348.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	2.0	0.0	2.0	3.0	0.0	0.5
Merged-chr14-55757074-2	chr14	55756574	55757574	+	899.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009894, intron 2 of 4)	intron (NM_009894, intron 2 of 4)	1350.0	NM_009894	12684.0	Mm.466766	NM_009894	ENSMUSG00000022219	Cideb	1110030C18Rik|AI790179|CIDE-B	cell death-inducing DNA fragmentation factor, alpha subunit-like effector B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6445283-4	chr4	6444788	6445788	+	899.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 1 of 30)	intron (NM_010945, intron 1 of 30)	8983.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0.5	2.0	0.0	0.0	0.0	0.0
Merged-chr6-29275642-2	chr6	29275142	29276142	+	899.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023516)	TTS (NM_023516)	3016.0	NM_023516	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5931075-2	chr19	5930575	5931575	+	899.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-6259.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78895587-4	chr17	78895082	78896082	+	899.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163625, intron 3 of 6)	intron (NM_001163625, intron 3 of 6)	11410.0	NM_001163625	73671.0	Mm.45514	NM_001163625	ENSMUSG00000038045	Sult6b1	2410078J06Rik|AV101767|ST6B1	sulfotransferase family, cytosolic, 6B, member 1	protein-coding	4.0	1.0	3.0	3.5	6.5	13.0
Merged-chr7-19285014-2	chr7	19284514	19285514	+	899.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013648, intron 1 of 9)	URR1A|DNA|hAT-Charlie	2390.0	NM_013648	20167.0	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97575321-2	chr11	97574821	97575821	+	899.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018873)	promoter-TSS (NM_018873)	-195.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	0.0	2.5	0.0	0.0	0.0	0.0
Merged-chr6-26766890-2	chr6	26766390	26767390	+	899.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	835464.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21671659-2	chr10	21671159	21672159	+	899.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-19186.0	NR_045843	432436.0	Mm.244553	NM_001004162	ENSMUSG00000056716	Gm5420	EG432436	predicted gene 5420	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72291681-3	chr5	72291188	72292188	+	899.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 21 of 22)	intron (NR_003966, intron 21 of 22)	88345.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83072479-2	chr6	83071979	83072979	+	899.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2254.0	NM_009392	21909.0	Mm.37	NM_009392	ENSMUSG00000068327	Tlx2	Enx|Hox11L.1|Hox11l1|NCX|Ncx1|Tlx1l1|Tlx1l2	T cell leukemia, homeobox 2	protein-coding	0.0	0.0	2.5	0.0	1.0	0.0
Merged-chr8-38660597-2	chr8	38660097	38661097	+	899.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145841, intron 1 of 7)	CpG	911.0	NM_145841	244431.0	Mm.210388	NM_145841	ENSMUSG00000039539	Sgcz	C230085N17Rik	sarcoglycan zeta	protein-coding	0.0	5.0	0.0	3.0	7.0	0.0
Merged-chr9-106456881-2	chr9	106456381	106457381	+	899.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021567, intron 1 of 12)	intron (NM_021567, intron 1 of 12)	3043.0	NM_021567	59092.0	Mm.286394	NM_021567	ENSMUSG00000023495	Pcbp4	1200003L19Rik|AlphaCP-4	poly(rC) binding protein 4	protein-coding	1.5	2.0	1.0	1.5	1.5	0.0
Merged-chr12-3832725-2	chr12	3832225	3833225	+	899.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	25565.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53009496-2	chr4	53008996	53009996	+	899.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2384.0	NM_001347099	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr1-71003852-2	chr1	71003352	71004352	+	899.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	99120.0	NM_007525	12021.0	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	-	BRCA1 associated RING domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138280981-2	chr5	138280481	138281481	+	899.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016964, intron 1 of 33)	intron (NM_016964, intron 1 of 33)	472.0	NM_016964	50878.0	Mm.285609	NM_016964	ENSMUSG00000036928	Stag3	SA-2	stromal antigen 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120832452-2	chr14	120831948	120832948	+	899.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-78746.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70591746-2	chr8	70591306	70592306	+	899.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007924, exon 12 of 12)	3' UTR (NM_007924, exon 12 of 12)	-2675.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	3.0	0.0	0.0	0.0	3.5	0.0
Merged-chr10-80173734-3	chr10	80173234	80174234	+	898.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_152857)	TTS (NR_152857)	790.0	NM_027207	69770.0	Mm.302754	NM_027207	ENSMUSG00000035595	1600002K03Rik	-	RIKEN cDNA 1600002K03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52361055-4	chr3	52360557	52361557	+	898.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92720.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124918024-6	chr6	124917467	124918467	+	898.9285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026988)	promoter-TSS (NM_026988)	-21.0	NM_026988	69202.0	Mm.142187	NM_026988	ENSMUSG00000030122	Ptms	2610009E16Rik	parathymosin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67633999-4	chr10	67633533	67634533	+	898.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62074.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66081183-4	chr5	66080663	66081663	+	898.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	17016.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134987722-4	chr1	134987209	134988209	+	898.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033409, exon 18 of 18)	exon (NM_001033409, exon 18 of 18)	25144.0	NM_001278115	67196.0	Mm.284587	NM_026024	ENSMUSG00000026429	Ube2t	2700084L22Rik|C80607	ubiquitin-conjugating enzyme E2T	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66883856-4	chr9	66883330	66884330	+	898.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	35875.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-83576107-4	chr9	83575610	83576610	+	898.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	27772.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	14.0	19.0	53.5	24.0	44.5	34.5
Merged-chr17-34307198-3	chr17	34306716	34307716	+	898.9111330000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010382, intron 1 of 5)	intron (NM_010382, intron 1 of 5)	1349.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	60.5	375.5	131.0	95.0	398.5	177.5
Merged-chr5-136035079-4	chr5	136034566	136035566	+	898.8916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-3430.0	NM_175309	100647.0	Mm.3089	NM_175309	ENSMUSG00000042985	Upk3b	AI447729|AI957187|P35|PMS2L14|UpIIIb	uroplakin 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138065643-3	chr4	138065141	138066141	+	898.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256195, intron 4 of 34)	intron (NM_001256195, intron 4 of 34)	67816.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	14.0	24.0	15.0	11.0	33.0	13.5
Merged-chr7-100818726-3	chr7	100818230	100819230	+	898.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178764, intron 4 of 8)	intron (NM_178764, intron 4 of 8)	44683.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	2.5	7.5	3.5	2.5	1.0	8.5
Merged-chr7-140953358-4	chr7	140952866	140953866	+	898.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2595.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-56192420-3	chr1	56191921	56192921	+	898.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER92D|LTR|ERV1	173443.0	NR_126076	69356.0	Mm.393775	NR_126075	ENSMUSG00000100372	1700003I22Rik	-	RIKEN cDNA 1700003I22 gene	ncRNA	0.0	0.0	0.5	6.0	1.5	4.5
Merged-chr7-67371582-4	chr7	67371076	67372076	+	898.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 1 of 11)	intron (NM_001357324, intron 1 of 11)	1282.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-93977286-5	chr13	93976703	93977703	+	898.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-80593.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44449965-6	chr10	44449498	44450498	+	898.8472289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007548, intron 3 of 6)	intron (NM_007548, intron 3 of 6)	8750.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127738323-2	chr10	127737823	127738823	+	898.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1215.0	NM_198035	320080.0	Mm.27258	NM_198035	ENSMUSG00000044617	Zbtb39	7030401O21Rik|mKIAA0352	zinc finger and BTB domain containing 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80700294-2	chr10	80699794	80700794	+	898.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	1526.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31908202-3	chr5	31907699	31908699	+	898.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 7 of 11)	intron (NM_144541, intron 7 of 11)	210149.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-35551950-3	chr5	35551438	35552438	+	898.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23132.0	NM_030208	78890.0	Mm.98522	NM_030208	ENSMUSG00000029097	Trmt44	2310079F23Rik|Mettl19	tRNA methyltransferase 44	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr2-155775783-4	chr2	155775277	155776277	+	898.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010808, intron 1 of 8)	CpG	435.0	NM_010808	17391.0	Mm.389325	NM_010808	ENSMUSG00000027612	Mmp24	AU040325|MMP-21|MT5-MMP|MT5MMP|MTMMP5	matrix metallopeptidase 24	protein-coding	0.0	0.5	0.0	0.5	0.0	0.0
Merged-chr4-28813816-3	chr4	28813343	28814343	+	898.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010141, intron 1 of 16)	CpG	698.0	NM_001122889	13841.0	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-113523144-4	chr7	113522660	113523660	+	898.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360668, intron 1 of 12)	intron (NM_001360668, intron 1 of 12)	9326.0	NM_001360669	67420.0	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88552237-3	chr3	88551741	88552741	+	898.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001362368)	TTS (NM_001362368)	710.0	NR_155543	83409.0	Mm.41680	NM_031248	ENSMUSG00000028062	Lamtor2	2010111E04Rik|AL022628|Mapbpip|P14|Rab25|Robld3	late endosomal/lysosomal adaptor, MAPK and MTOR activator 2	protein-coding	10.0	0.0	2.0	0.0	5.0	2.5
Merged-chr1-149959954-4	chr1	149959482	149960482	+	898.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	1308.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-107403201-4	chr8	107402699	107403699	+	898.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008706)	promoter-TSS (NM_008706)	6.0	NM_008706	18104.0	Mm.252	NM_008706	ENSMUSG00000003849	Nqo1	AV001255|Dia4|Dtd|Nmo-1|Nmo1|Nmor1|Ox-1|Ox1|Qr1	NAD(P)H dehydrogenase, quinone 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-105496846-4	chr11	105496328	105497328	+	898.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40093.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145245428-3	chr6	145244936	145245936	+	898.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021284, intron 2 of 4)	(CAAA)n|Simple_repeat|Simple_repeat	4795.0	NM_021284	16653.0	Mm.383182	NM_021284	ENSMUSG00000030265	Kras	AI929937|K-Ras|K-Ras 2|K-ras|Ki-ras|Kras-2|Kras2|c-K-ras|c-Ki-ras|p21B|ras	Kirsten rat sarcoma viral oncogene homolog	protein-coding	27.0	72.0	65.5	29.0	80.0	44.5
Merged-chr2-130178927-3	chr2	130178321	130179321	+	898.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009225, intron 1 of 6)	CpG	543.0	NM_009225	20638.0	Mm.88216	NM_009225	ENSMUSG00000027404	Snrpb	AL024368|AU018828|SM-B|SM11|SMB|SNRNP-B	small nuclear ribonucleoprotein B	protein-coding	53.5	64.5	76.0	43.5	75.5	61.0
Merged-chr8-35469169-3	chr8	35468664	35469664	+	898.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026067, exon 7 of 7)	exon (NM_026067, exon 7 of 7)	26369.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	0.0	20.0	2.5	4.0	4.0	7.5
Merged-chr10-8926367-6	chr10	8925833	8926833	+	898.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-40263.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	19.0	56.5	54.5	25.5	13.5	7.5
Merged-chr16-4667386-3	chr16	4666893	4667893	+	898.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030205, intron 6 of 27)	intron (NM_030205, intron 6 of 27)	12327.0	NM_030205	78885.0	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36161332-4	chr17	36160836	36161836	+	898.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033517, exon 4 of 4)	non-coding (NR_033517, exon 4 of 4)	7201.0	NM_001081032	667977.0	Mm.441651	NM_001081032	ENSMUSG00000073402	Gm8909	EG667977|H2-Tw5l|H2-gs17	predicted gene 8909	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134094135-4	chr4	134093651	134094651	+	898.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013706, intron 1 of 1)	intron (NM_013706, intron 1 of 1)	922.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	41.5	183.5	107.0	11.0	21.5	16.5
Merged-chr12-69403057-2	chr12	69402557	69403557	+	898.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_LTR|LTR|ERV1	30907.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113402874-4	chr5	113402376	113403376	+	898.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45582.0	NM_001012726	503692.0	Mm.348794	NM_001012726	ENSMUSG00000053873	Aym1	-	activator of yeast meiotic promoters 1	protein-coding	0.0	1.0	4.5	8.5	0.5	5.5
Merged-chr11-106131964-4	chr11	106131458	106132458	+	898.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 6 of 15)	intron (NM_011947, intron 6 of 15)	27969.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	6.5	16.5	22.0	4.0	4.0	3.5
Merged-chr19-11803220-4	chr19	11802709	11803709	+	898.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286543, intron 2 of 11)	B3|SINE|B2	16194.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	33.5	32.5	41.0	20.0	41.0	40.0
Merged-chr6-31191184-4	chr6	31190684	31191684	+	898.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 1 of 2)	LTR33C|LTR|ERVL	27290.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-65071063-4	chr14	65070551	65071551	+	898.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360385, intron 2 of 5)	intron (NM_001360385, intron 2 of 5)	27055.0	NM_018788	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	7.0	1.0	3.0	2.0	2.5	4.5
Merged-chr16-23181766-4	chr16	23181260	23182260	+	898.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155420, intron 1 of 2)	intron (NR_155420, intron 1 of 2)	6480.0	NR_155420	105246089.0	Mm.390905	NR_155420		C730014E05Rik	-	RIKEN cDNA C730014E05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58418270-4	chr15	58417748	58418748	+	898.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145959, intron 1 of 23)	intron (NM_145959, intron 1 of 23)	2780.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	3.5	6.0	0.5	0.0	0.5	1.5
Merged-chr9-58630650-4	chr9	58630128	58631128	+	898.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357751, intron 4 of 8)	intron (NM_001357751, intron 4 of 8)	48388.0	NM_001357751	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110982795-4	chr9	110982301	110983301	+	898.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028838, exon 9 of 9)	3' UTR (NM_028838, exon 9 of 9)	-6698.0	NR_152179	791282.0	Mm.406769	NR_152179	ENSMUSG00000057802	Gm10030	-	predicted gene 10030	ncRNA	3.0	2.0	1.0	11.0	23.0	18.0
Merged-chr2-129603559-2	chr2	129603060	129604060	+	898.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	8098.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	16.0	14.5	20.0	2.5	5.0	5.5
Merged-chr4-139206009-4	chr4	139205504	139206504	+	898.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	B3A|SINE|B2	11893.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	15.5	5.5	24.0	8.0	13.5	6.0
Merged-chr2-59316723-3	chr2	59316228	59317228	+	898.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 9 of 20)	intron (NM_175464, intron 9 of 20)	69954.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-55850956-4	chr7	55850475	55851475	+	898.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 1 of 30)	intron (NM_011370, intron 1 of 30)	8904.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50565342-4	chr9	50564848	50565848	+	898.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008360, intron 2 of 7)	intron (NM_008360, intron 2 of 7)	-4080.0	NM_025687	66654.0	Mm.442255	NM_025687	ENSMUSG00000032065	Tex12	5730518K06Rik	testis expressed gene 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83883161-4	chr7	83882690	83883690	+	898.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030705, exon 1 of 1)	exon (NM_030705, exon 1 of 1)	1151.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	16.5	35.5	31.0	18.0	28.5	30.0
Merged-chr7-80109580-3	chr7	80109069	80110069	+	898.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173011, intron 1 of 10)	intron (NM_173011, intron 1 of 10)	5781.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	0.0	4.0	1.0	0.0	4.0	1.0
Merged-chr14-7991557-7	chr14	7991062	7992062	+	898.6904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007870, intron 1 of 7)	ID_B1|SINE|B4	2620.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100060614-4	chr15	100060125	100061125	+	898.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	21961.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87807302-6	chr6	87806838	87807838	+	898.677795	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104478, intron 1 of 2)	intron (NR_104478, intron 1 of 2)	2419.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	24.5	40.0	40.0	10.5	43.5	33.0
Merged-chr9-21297315-4	chr9	21296823	21297823	+	898.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110300, intron 9 of 10)	intron (NM_001110300, intron 9 of 10)	-6114.0	NM_009878	12581.0	Mm.29020	NM_009878	ENSMUSG00000096472	Cdkn2d	INK4d|p19|p19INK4d	cyclin dependent kinase inhibitor 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143107249-10	chr7	143106782	143107782	+	898.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008434)	promoter-TSS (NM_008434)	28.0	NM_008434	16535.0	Mm.439769	NM_008434	ENSMUSG00000009545	Kcnq1	AW559127|KVLQT1|Kcna9	potassium voltage-gated channel, subfamily Q, member 1	protein-coding	0.0	15.0	8.5	0.0	5.5	6.0
Merged-chr7-112316682-3	chr7	112316172	112317172	+	898.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001193305, intron 8 of 25)	intron (NM_001193305, intron 8 of 25)	-51636.0	NM_027587	100504195.0	Mm.291129	NM_027587	ENSMUSG00000030771	Micalcl	4921517J23Rik	MICAL C-terminal like	protein-coding	1.5	0.0	1.5	3.5	4.5	0.5
Merged-chr17-5733560-3	chr17	5733029	5734029	+	898.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 8 of 8)	intron (NM_146073, intron 8 of 8)	-65128.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-68499156-3	chr18	68498628	68499628	+	898.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69808.0	NM_001301372	17200.0	Mm.426053	NM_008560	ENSMUSG00000045569	Mc2r	ACTH-R|ACTHR|MC2-R	melanocortin 2 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30801703-3	chr2	30801186	30802186	+	898.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198000)	promoter-TSS (NM_198000)	51.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96622522-3	chr10	96622007	96623007	+	898.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007569, exon 2 of 2)	3' UTR (NM_007569, exon 2 of 2)	5506.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77381771-3	chr11	77381278	77382278	+	898.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291190, intron 1 of 13)	intron (NM_001291190, intron 1 of 13)	33498.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129912461-1	chr2	129911961	129912961	+	898.6666869999999	f0_balb.idr	Intergenic	Intergenic	-99879.0	NM_009374	21818.0	Mm.2961	NM_009374	ENSMUSG00000027401	Tgm3	AI893889|TG E|TG(E)|TGE|TGase E|TGase-3|we	transglutaminase 3, E polypeptide	protein-coding	8.5	7.5	5.5	35.5	71.0	59.5
Merged-chr17-86167984-3	chr17	86167497	86168497	+	898.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011104, exon 1 of 15)	5' UTR (NM_011104, exon 1 of 15)	212.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-150593233-3	chr5	150592722	150593722	+	898.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133898, intron 1 of 4)	intron (NM_133898, intron 1 of 4)	1303.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127479989-4	chr10	127479464	127480464	+	898.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359246, intron 13 of 23)	intron (NM_001359246, intron 13 of 23)	-21722.0	NM_001359751	237611.0	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	8.5	4.5	8.5	2.0	8.5	3.5
Merged-chr19-56295198-2	chr19	56294698	56295698	+	898.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146101, intron 1 of 11)	intron (NM_146101, intron 1 of 11)	7286.0	NM_146101	226243.0	Mm.25791	NM_146101	ENSMUSG00000025075	Habp2	AI035669|FSAP|HABP|HGFAL|PHBP	hyaluronic acid binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-53608396-4	chr7	53607901	53608901	+	898.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26|LTR|ERVK	283488.0	NR_105746	102466619.0		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117983508-3	chr10	117983010	117984010	+	898.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	58051.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	8.5	6.0	15.5	20.0	30.0	30.5
Merged-chr7-127210887-2	chr7	127210387	127211387	+	898.625	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016754)	promoter-TSS (NM_016754)	-721.0	NM_016754	17907.0	Mm.14526	NM_016754	ENSMUSG00000030672	Mylpf	2410014J02Rik|MLC-2|Mlc2	myosin light chain, phosphorylatable, fast skeletal muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31125166-2	chr17	31124631	31125631	+	898.625	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011575)	TTS (NM_011575)	4480.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	0.0	0.0	1.0	0.0	5.0	3.0
Merged-chr7-19849786-4	chr7	19849247	19850247	+	898.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2256.0	NM_001270489	100502736.0	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126869582-4	chr8	126869114	126870114	+	898.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20594.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80060508-3	chr12	80059993	80060993	+	898.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	52520.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0.5	2.5	0.0	0.0	0.0	0.0
Merged-chr17-64602899-4	chr17	64602400	64603400	+	898.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	1251.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11475331-4	chr8	11474811	11475811	+	898.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-2618.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142910354-4	chr5	142909825	142910825	+	898.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3571.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5276084-4	chr17	5275584	5276584	+	898.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 6 of 19)	intron (NM_001085355, intron 6 of 19)	142683.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88574400-2	chr4	88573900	88574900	+	898.5833130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-2602.0	NM_206975	404549.0	Mm.377947	NM_206975	ENSMUSG00000095896	Ifna14	-	interferon alpha 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32238650-4	chr11	32238142	32239142	+	898.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284359, intron 9 of 13)	intron (NM_001284359, intron 9 of 13)	12137.0	NM_010822	268395.0	Mm.263161	NM_010822	ENSMUSG00000020287	Mpg	9830006D05|AI326268|APNG|Aag|Mid1	N-methylpurine-DNA glycosylase	protein-coding	1.0	6.5	2.0	0.0	1.0	0.0
Merged-chr9-44453742-2	chr9	44453256	44454256	+	898.56665	f1_balb.idr|f1_c57bl6.idr	intron (NM_009476, intron 3 of 4)	intron (NM_009476, intron 3 of 4)	1011.0	NM_009476	22269.0	Mm.4453	NM_009476	ENSMUSG00000041523	Upk2	AW491716|UPII	uroplakin 2	protein-coding	2.0	4.0	5.0	0.5	2.0	6.0
Merged-chr9-64091330-4	chr9	64090828	64091828	+	898.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	10567.0	NR_040743	76814.0	Mm.243771	NR_040743		Scarletltr	2600006L11Rik	Scarletltr, erythroid developmental long intergenic non-protein coding transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84615700-4	chr10	84615203	84616203	+	898.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6734.0	NM_027423	70428.0	Mm.335007	NM_027423	ENSMUSG00000034453	Polr3b	2700078H01Rik|A330032P03Rik|C85372|RPC2	polymerase (RNA) III (DNA directed) polypeptide B	protein-coding	2.0	16.0	17.5	6.5	12.0	14.5
Merged-chr16-17686785-3	chr16	17686306	17687306	+	898.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358404, intron 2 of 16)	intron (NM_001358404, intron 2 of 16)	36094.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27507075-4	chr7	27506577	27507577	+	898.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019412, intron 4 of 5)	intron (NM_019412, intron 4 of 5)	7753.0	NM_019412	19153.0	Mm.10119	NM_019412	ENSMUSG00000053198	Prx	L-Periaxin	periaxin	protein-coding	4.5	10.5	3.0	0.0	12.0	13.0
Merged-chr10-45454320-4	chr10	45453825	45454825	+	898.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001031772, intron 2 of 4)	intron (NM_001031772, intron 2 of 4)	15876.0	NM_001031772	380669.0	Mm.440328	NM_001031772	ENSMUSG00000063804	Lin28b	2810403D23Rik|D030047M17Rik|Lin-28.2	lin-28 homolog B (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-96210653-2	chr7	96210153	96211153	+	898.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011858)	promoter-TSS (NM_011858)	16.0	NM_011858	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0.0	0.0	0.5	3.0	4.5	2.0
Merged-chr3-20199118-4	chr3	20198628	20199628	+	898.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23231.0	NR_105974	102465609.0		NR_105974	ENSMUSG00000099105	Mir7007	Gm27897|mmu-mir-7007	microRNA 7007	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121283788-2	chr9	121283304	121284304	+	898.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-6632.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	9.5	0.0	2.0	0.0	14.0	1.5
Merged-chr11-75661437-2	chr11	75660937	75661937	+	898.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080774, intron 9 of 31)	intron (NM_001080774, intron 9 of 31)	5422.0	NM_001080775	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32818185-4	chr18	32817717	32818717	+	898.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021367, intron 4 of 4)	intron (NM_021367, intron 4 of 4)	1357.0	NR_033206	53603.0	Mm.143716	NM_021367	ENSMUSG00000024379	Tslp	-	thymic stromal lymphopoietin	protein-coding	52.0	89.5	95.5	49.5	41.0	47.0
Merged-chr1-60410079-4	chr1	60409573	60410573	+	898.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198127, intron 1 of 8)	CpG	454.0	NM_001198570	329165.0	Mm.212066	NM_198127	ENSMUSG00000026782	Abi2	8430425M24Rik|AI839867|C130078H13	abl-interactor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-63384990-2	chr10	63384490	63385490	+	898.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253685, intron 1 of 4)	intron (NM_001253685, intron 1 of 4)	-1573.0	NM_013888	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69190684-2	chr12	69190184	69191184	+	898.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027269, intron 2 of 2)	B2_Mm2|SINE|B2	6526.0	NM_146035	217664.0	Mm.206642	NM_146035	ENSMUSG00000043998	Mgat2	AA407964|CDGS2|GLCNACTII|GNT-II|GNT2	mannoside acetylglucosaminyltransferase 2	protein-coding	4.0	0.0	0.5	4.0	0.0	1.0
Merged-chr11-77444997-4	chr11	77444363	77445363	+	898.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 13 of 14)	intron (NM_177710, intron 13 of 14)	-19050.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39635028-4	chr18	39634499	39635499	+	898.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-138498.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105152081-2	chr4	105151581	105152581	+	898.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5266.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70463592-2	chr17	70463092	70464092	+	898.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 4 of 14)	RSINE1|SINE|B4	38800.0	NM_027712	224997.0	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	DLG associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88403490-3	chr17	88402989	88403989	+	898.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37215.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	1.0	2.0	6.0	7.0	2.5	0.0
Merged-chr1-36136236-2	chr1	36135736	36136736	+	898.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	8077.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69373146-3	chr12	69372742	69373742	+	898.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007481, exon 2 of 2)	exon (NM_007481, exon 2 of 2)	1092.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	11.0	58.5	22.5	12.0	67.0	26.5
Merged-chr8-8228332-2	chr8	8227832	8228832	+	898.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	432441.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34236510-4	chr1	34236005	34237005	+	898.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276764, intron 60 of 102)	intron (NM_001276764, intron 60 of 102)	76175.0	NM_010081	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181189150-3	chr2	181188648	181189648	+	898.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_151465)	TTS (NR_151465)	1901.0	NM_001356427	66496.0	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24338036-4	chr13	24337539	24338539	+	898.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284519, intron 2 of 17)	intron (NM_001284519, intron 2 of 17)	10635.0	NM_001111110	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152707675-2	chr3	152707175	152708175	+	898.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6425.0	NM_178016	329777.0	Mm.331447	NM_025662	ENSMUSG00000039047	Pigk	3000001O05Rik|Gm38470|PIG-K	phosphatidylinositol glycan anchor biosynthesis, class K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122698822-4	chr5	122698331	122699331	+	898.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8713.0	NM_001310720	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	6.5	4.5	8.5	14.5	12.0	5.0
Merged-chr13-37855207-3	chr13	37854710	37855710	+	898.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	27817.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24142397-2	chr10	24141897	24142897	+	898.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6892.0	NM_001358563	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-45081787-1	chr12	45081287	45082287	+	898.5	f0_balb.idr	Intergenic	Intergenic	-7304.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	3.0	4.0	2.0	0.0	3.5	4.0
Merged-chr16-78452496-4	chr16	78452006	78453006	+	898.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75325.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32551750-2	chr11	32551210	32552210	+	898.5	f0_balb.idr|f1_balb.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	18444.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0.0	20.5	2.5	0.0	21.0	21.5
Merged-chr16-4640005-2	chr16	4639505	4640505	+	898.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139307)	promoter-TSS (NM_139307)	60.0	NM_139307	246154.0	Mm.482140	NM_139307	ENSMUSG00000039646	Vasn	2610528G05Rik|Atia|Slitl2	vasorin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61733671-2	chr9	61733171	61734171	+	898.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	180839.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105877497-2	chr5	105876997	105877997	+	898.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_030777, intron 1 of 9)	intron (NR_030777, intron 1 of 9)	929.0	NM_018759	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	8.5	14.0	18.5	9.5	6.0	15.5
Merged-chr13-37995665-2	chr13	37995160	37996160	+	898.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1452.0	NM_001360842	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	7.5	0.0	1.0	0.5	0.0	0.5
Merged-chr11-102061505-2	chr11	102061005	102062005	+	898.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_016695, exon 10 of 13)	exon (NM_016695, exon 10 of 13)	19994.0	NM_001160713	52685.0	Mm.266885	NM_027987	ENSMUSG00000017309	Cd300lg	2310016B05Rik|Clm9|D11Ertd736e	CD300 molecule like family member G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61453399-2	chr18	61452899	61453899	+	898.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31208.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	3.5	30.0	13.5	3.5	29.0	13.5
Merged-chr6-121272087-4	chr6	121271510	121272510	+	898.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26104.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	4.0	8.0	6.5	5.5	0.0	5.0
Merged-chr2-153121943-6	chr2	153121442	153122442	+	898.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 1 of 12)	intron (NM_001172117, intron 1 of 12)	13474.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	13.0	38.5	40.5	13.0	37.5	40.5
Merged-chr10-127542698-5	chr10	127542331	127543331	+	898.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 77 of 88)	intron (NM_008512, intron 77 of 88)	-8272.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	4.5	9.5	0.0	0.0	12.5	0.0
Merged-chr8-120124453-4	chr8	120123952	120124952	+	898.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172286, intron 1 of 12)	intron (NM_172286, intron 1 of 12)	10300.0	NM_001163761	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36821688-4	chr16	36821190	36822190	+	898.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134111, intron 2 of 5)	intron (NM_134111, intron 2 of 5)	6569.0	NM_001113401	106389.0	Mm.432078	NM_134111	ENSMUSG00000022838	Eaf2	AW048865|FESTA-L|FESTA-S|Festa|Traits|U19	ELL associated factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92381933-4	chr5	92381435	92382435	+	898.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-6199.0	NM_181728	109979.0	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	5.5	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13742646-3	chr9	13742159	13743159	+	898.455566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6522.0	NR_024025	77116.0	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106299455-4	chr9	106298940	106299940	+	898.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 7 of 10)	PB1D10|SINE|Alu	18379.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	24.5	65.0	42.5	20.0	11.5	15.0
Merged-chr17-56858422-3	chr17	56857952	56858952	+	898.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039114, intron 6 of 14)	intron (NM_001039114, intron 6 of 14)	15995.0	NM_001039114	328845.0	Mm.179421	NM_001039114	ENSMUSG00000024207	Acsbg2	Bgr	acyl-CoA synthetase bubblegum family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13495742-3	chr9	13495246	13496246	+	898.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64385.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	9.0	12.0	6.5	5.5	5.0	3.5
Merged-chr13-37880278-3	chr13	37879780	37880780	+	898.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	-8154.0	NR_033218	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-77172682-3	chr5	77172183	77173183	+	898.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38522.0	NM_001289767	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	2.0	1.5	2.0	0.0	0.5	0.0
Merged-chr18-25538407-4	chr18	25537955	25538955	+	898.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362322, intron 2 of 12)	intron (NM_001362322, intron 2 of 12)	141293.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52949462-4	chr2	52948941	52949941	+	898.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	91573.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130788498-2	chr4	130787998	130788998	+	898.4166869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4039.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87073446-3	chr11	87072915	87073915	+	898.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025638, intron 1 of 9)	intron (NM_025638, intron 1 of 9)	722.0	NM_025638	66569.0	Mm.281887	NM_025638	ENSMUSG00000061666	Gdpd1	2610020H15Rik	glycerophosphodiester phosphodiesterase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64485544-4	chr1	64485045	64486045	+	898.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-47259.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-88861752-4	chr18	88861232	88862232	+	898.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32475.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-12265212-3	chr12	12264686	12265686	+	898.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	3047.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	5.0	24.5	19.5	10.5	37.0	19.5
Merged-chr9-65205639-3	chr9	65205110	65206110	+	898.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9080.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132380958-4	chr4	132380452	132381452	+	898.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161797, intron 3 of 12)	intron (NM_001161797, intron 3 of 12)	-27266.0	NR_003270	399101.0	Mm.486919	NR_002904	ENSMUSG00000085241	Snhg3	Rnu17d|U17HG	small nucleolar RNA host gene 3	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84352744-4	chr17	84352230	84353230	+	898.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 26 of 37)	intron (NM_183021, intron 26 of 37)	113478.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53423564-4	chr19	53423083	53424083	+	898.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32949.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32590082-4	chr9	32589582	32590582	+	898.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48630.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108736366-4	chr6	108735857	108736857	+	898.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46702.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	9.0	2.0	0.5	1.5	5.5	1.0
Merged-chr17-23746501-2	chr17	23745975	23746975	+	898.375	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028416)	promoter-TSS (NM_028416)	-646.0	NM_028416	73016.0	Mm.221319	NM_028416	ENSMUSG00000040680	Kremen2	2900054E04Rik|Krm2	kringle containing transmembrane protein 2	protein-coding	0.0	0.0	0.0	2.0	0.0	1.5
Merged-chr13-24684693-4	chr13	24684187	24685187	+	898.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080381, intron 8 of 14)	intron (NM_001080381, intron 8 of 14)	46039.0	NM_029679	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118660216-7	chr9	118659841	118660841	+	898.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 6 of 27)	intron (NM_133721, intron 6 of 27)	-51351.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	48.5	132.5	78.5	20.5	94.0	66.5
Merged-chr7-35585340-8	chr7	35584804	35585804	+	898.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145633)	promoter-TSS (NM_145633)	278.0	NM_145840	243923.0	Mm.222680	NM_145840	ENSMUSG00000056043	Rgs9bp	R9AP|Rgs9-1bp	regulator of G-protein signalling 9 binding protein	protein-coding	0.0	2.0	0.0	0.0	0.0	0.0
Merged-chr14-72689681-4	chr14	72689171	72690171	+	898.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 1 of 25)	L1_Mur3|LINE|L1	20332.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-131801539-3	chr7	131801059	131802059	+	898.3444820000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-164901.0	NM_173410	233919.0	Mm.208740	NM_173410	ENSMUSG00000040125	Gpr26	9630036A11Rik|A730021D22	G protein-coupled receptor 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42515553-4	chr19	42515059	42516059	+	898.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3246.0	NM_177464	52013.0	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	5.0	15.0	8.5	14.5	12.5	6.5
Merged-chr15-97343004-3	chr15	97342478	97343478	+	898.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 3 of 5)	MTD|LTR|ERVL-MaLR	-95691.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135267739-4	chr1	135267237	135268237	+	898.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159624, intron 5 of 9)	intron (NM_001159624, intron 5 of 9)	-9265.0	NM_007921	13710.0	Mm.441439	NM_007921	ENSMUSG00000003051	Elf3	ESE-1|ESX|jen	E74-like factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9621382-3	chr4	9620928	9621928	+	898.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133723, exon 5 of 5)	3' UTR (NM_133723, exon 5 of 5)	22289.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	5.0	0.0	7.0	12.5	5.5	10.5
Merged-chr12-111429197-3	chr12	111428714	111429714	+	898.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289487, intron 12 of 13)	intron (NM_001289487, intron 12 of 13)	11769.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3833050-4	chr19	3832633	3833633	+	898.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18640.0	NM_001271496	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95820743-3	chr15	95820243	95821243	+	898.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	9329.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73160811-3	chr14	73160310	73161310	+	898.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033185, intron 5 of 15)	MTB_Mm|LTR|ERVL-MaLR	18025.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51818433-4	chr11	51817909	51818909	+	898.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357588, intron 12 of 12)	intron (NM_001357588, intron 12 of 12)	39072.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171064625-4	chr1	171064122	171065122	+	898.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106103)	promoter-TSS (NR_106103)	30.0	NR_106103	102466998.0		NR_106103	ENSMUSG00000099119	Mir6546	Gm27408|mmu-mir-6546	microRNA 6546	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-40955350-3	chr15	40954854	40955854	+	898.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356998, intron 4 of 6)	intron (NM_001356998, intron 4 of 6)	-218347.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-93179756-4	chr13	93179241	93180241	+	898.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_154997, intron 4 of 15)	intron (NR_154997, intron 4 of 15)	12676.0	NM_001361536	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	10.0	30.5	32.0	32.5	31.0	45.0
Merged-chr11-117792568-7	chr11	117792044	117793044	+	898.3214109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001195088, exon 16 of 16)	exon (NM_001195088, exon 16 of 16)	-5116.0	NM_029964	77727.0	Mm.159981	NM_029964	ENSMUSG00000025573	6030468B19Rik	Il-40	RIKEN cDNA 6030468B19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84443552-4	chr10	84443050	84444050	+	898.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3079.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95783849-4	chr9	95783354	95784354	+	898.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033210, intron 5 of 15)	intron (NM_001033210, intron 5 of 15)	-33496.0	NM_011643	22063.0	Mm.149633	NM_011643	ENSMUSG00000032839	Trpc1	Mtrp1|Trp1|Trrp1	transient receptor potential cation channel, subfamily C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36724359-4	chr16	36723857	36724857	+	898.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 7 of 7)	intron (NM_001285788, intron 7 of 7)	30379.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79994633-4	chr10	79994199	79995199	+	898.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007725, exon 7 of 7)	3' UTR (NM_007725, exon 7 of 7)	-2909.0	NM_001347081	27403.0	Mm.103351	NM_013850	ENSMUSG00000035722	Abca7	ABCX|Abc51	ATP-binding cassette, sub-family A (ABC1), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58158311-4	chr13	58157826	58158826	+	898.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198004, intron 1 of 4)	(TG)n|Simple_repeat|Simple_repeat	677.0	NM_198004	75731.0	Mm.293919	NM_198004	ENSMUSG00000050002	Idnk	5133401N09Rik	idnK gluconokinase homolog (E. coli)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101540115-4	chr13	101539601	101540601	+	898.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-142521.0	NR_046187	78136.0	Mm.399065	NR_046187		4922502H24Rik	-	RIKEN cDNA 4922502H24 gene	ncRNA	22.5	51.5	12.0	3.0	28.0	27.0
Merged-chr10-93833939-2	chr10	93833404	93834404	+	898.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001206851, intron 1 of 6)	CpG	2349.0	NM_001206851	327799.0	Mm.491598	NM_183199	ENSMUSG00000020020	Usp44	E430004F17Rik	ubiquitin specific peptidase 44	protein-coding	0.0	6.0	1.0	2.5	0.0	0.0
Merged-chr6-17508746-1	chr6	17508246	17509246	+	898.25	f0_balb.idr	intron (NM_008591, intron 3 of 21)	intron (NM_008591, intron 3 of 21)	44789.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	5.0	0.0	2.5	2.0	2.0	6.0
Merged-chr5-115531491-2	chr5	115530938	115531938	+	898.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	24762.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	0.0	1.0	1.0	0.0	2.5	0.5
Merged-chr8-27280175-4	chr8	27279681	27280681	+	898.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15864.0	NR_003107	732482.0	Mm.463248	NR_003107		Gm9731	-	Fam58a pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51518088-4	chr10	51517593	51518593	+	898.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	27195.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60844586-2	chr18	60844086	60845086	+	898.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011552, intron 2 of 24)	intron (NM_011552, intron 2 of 24)	4378.0	NM_011552	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	18.5	55.0	28.5	18.5	55.0	28.0
Merged-chr11-72518688-4	chr11	72518192	72519192	+	898.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029932, intron 8 of 11)	MTD|LTR|ERVL-MaLR	-28772.0	NM_153060	216892.0	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-78678663-3	chr1	78678153	78679153	+	898.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028817, intron 2 of 15)	ORR1C2|LTR|ERVL-MaLR	20213.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	0.0	0.0	4.0	0.0	6.0	3.5
Merged-chr4-34764911-3	chr4	34764414	34765414	+	898.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-8655.0	NM_001033255	214568.0	Mm.297405	NM_001033255	ENSMUSG00000071015	Gm136	-	predicted gene 136	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57628762-4	chr10	57628250	57629250	+	898.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3231.0	NM_008863	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93797551-4	chr16	93797027	93798027	+	898.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027293, intron 27 of 36)	intron (NM_027293, intron 27 of 36)	-2626.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3737164-3	chr4	3736674	3737674	+	898.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	22210.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	8.0	36.0	36.0	21.0	35.0	25.5
Merged-chr11-68865969-4	chr11	68865473	68866473	+	898.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12842.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-116977991-4	chr2	116977476	116978476	+	898.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77824.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168478132-2	chr2	168477664	168478664	+	898.1666869999999	f0_balb.idr|f1_balb.idr	3' UTR (NM_001136073, exon 11 of 11)	3' UTR (NM_001136073, exon 11 of 11)	112201.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	4.0	7.5	1.0	0.5	7.0	3.5
Merged-chr11-95825755-2	chr11	95825255	95826255	+	898.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_153104, intron 1 of 2)	intron (NM_153104, intron 1 of 2)	1255.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-85343222-5	chr9	85342758	85343758	+	898.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16108.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	28.5	31.0	27.5	13.5	27.5	26.0
Merged-chr6-134706662-3	chr6	134706169	134707169	+	898.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170479, intron 3 of 3)	intron (NM_001170479, intron 3 of 3)	65729.0	NM_026371	67774.0	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	8.0	41.0	18.5	9.5	29.0	28.0
Merged-chr2-35827035-4	chr2	35826546	35827546	+	898.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029774, intron 6 of 9)	intron (NM_029774, intron 6 of 9)	7856.0	NR_040618	77665.0	Mm.400558	NR_040618	ENSMUSG00000086449	9030204H09Rik	-	RIKEN cDNA 9030204H09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137836224-4	chr5	137835713	137836713	+	898.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153510)	promoter-TSS (NM_153510)	65.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142458487-2	chr5	142457987	142458987	+	898.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_199068, exon 9 of 9)	3' UTR (NM_199068, exon 9 of 9)	-5444.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3657018-4	chr2	3656522	3657522	+	898.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-56436.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137603946-4	chr4	137603452	137604452	+	898.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355588, intron 1 of 26)	intron (NM_001355588, intron 1 of 26)	9780.0	NM_130879	170707.0	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	68.5	60.5	58.0	19.0	54.0	42.5
Merged-chr12-116449768-4	chr12	116449259	116450259	+	898.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133762, intron 26 of 28)	MTD|LTR|ERVL-MaLR	-35961.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	25.0	43.5	36.0	1.5	0.0	8.0
Merged-chr11-11903643-4	chr11	11903135	11904135	+	898.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-5491.0	NM_001190448	13195.0	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34080195-4	chr18	34079692	34080692	+	898.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72986.0	NM_013512	13824.0	Mm.3465	NM_013512	ENSMUSG00000024376	Epb41l4a	Epb4.1l4|Epb4.1l4a|NBL4	erythrocyte membrane protein band 4.1 like 4a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-63499117-3	chr17	63498575	63499575	+	898.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_015794, exon 1 of 9)	exon (NM_015794, exon 1 of 9)	1505.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4161509-3	chr12	4161003	4162003	+	898.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 2 of 21)	URR1B|DNA|hAT-Charlie	27350.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74476124-4	chr11	74475614	74476614	+	898.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 3 of 24)	intron (NM_001015046, intron 3 of 24)	111443.0	NM_001011851	258153.0	Mm.376124	NM_001011851	ENSMUSG00000058275	Olfr412	MOR127-5P	olfactory receptor 412	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46302093-4	chr17	46301591	46302591	+	898.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286013, intron 5 of 5)	intron (NM_001286013, intron 5 of 5)	4163.0	NM_001286013	106565.0	Mm.23633	NM_134120	ENSMUSG00000047428	Dlk2	AI413481|DLK-2|Egfl9	delta like non-canonical Notch ligand 2	protein-coding	1.0	6.0	1.0	1.5	6.0	1.0
Merged-chr3-109047916-4	chr3	109047384	109048384	+	898.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-20277.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-118083785-4	chr4	118083290	118084290	+	898.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285520, intron 2 of 11)	intron (NM_001285520, intron 2 of 11)	51156.0	NM_001285520	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125462410-3	chr8	125461904	125462904	+	898.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 10 of 21)	intron (NM_001357372, intron 10 of 21)	30429.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	25.0	107.0	66.0	26.0	26.5	18.0
Merged-chr19-12537415-4	chr19	12536908	12537908	+	898.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35412.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	5.5	14.5	13.5	0.5	8.5	0.0
Merged-chr17-17828045-6	chr17	17827535	17828535	+	898.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2153.0	NR_029536	387230.0		NR_029536	ENSMUSG00000065396	Mir99b	Mirn99b|mmu-mir-99b	microRNA 99b	ncRNA	3.0	3.5	3.0	0.0	7.0	6.5
Merged-chr14-47371866-4	chr14	47371377	47372377	+	898.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1983.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.0	7.0	4.5	1.5	3.5	2.5
Merged-chr13-111687234-9	chr13	111686723	111687723	+	898.009277	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172593, intron 1 of 12)	CpG	1045.0	NM_172593	218613.0	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	2.0	7.0	2.0	0.5	2.5	0.0
Merged-chr10-37336974-1	chr10	37336474	37337474	+	898.0	f0_balb.idr	Intergenic	Intergenic	-198048.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29004010-2	chr17	29003510	29004510	+	898.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357173, intron 1 of 13)	intron (NM_001357173, intron 1 of 13)	3985.0	NM_134115	106504.0	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80182429-2	chr10	80181929	80182929	+	898.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007909, intron 1 of 3)	(CGTG)n|Simple_repeat|Simple_repeat	2947.0	NM_007909	13637.0	Mm.1478	NM_007909	ENSMUSG00000003070	Efna2	CEK7L|Elf1|Epl6|Eplg6|Lerk6	ephrin A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67123937-4	chr10	67123426	67124426	+	898.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3332.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97383995-2	chr15	97383495	97384495	+	898.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 5 of 5)	intron (NM_172293, intron 5 of 5)	-136708.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11419868-4	chr8	11419388	11420388	+	898.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009932, intron 20 of 47)	intron (NM_009932, intron 20 of 47)	-58041.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83649927-2	chr6	83649427	83650427	+	898.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016751, intron 4 of 6)	intron (NM_016751, intron 4 of 6)	6189.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	26.0	41.5	29.0	25.5	19.5	40.5
Merged-chr8-61896960-4	chr8	61896453	61897453	+	898.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 1 of 21)	intron (NM_001293772, intron 1 of 21)	5737.0	NM_001081390	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-7392675-3	chr4	7392175	7393175	+	898.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-168013.0	NR_040645	71510.0	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33968703-4	chr17	33968223	33969223	+	898.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10068.0	NR_004446	630499.0	Mm.440940	NM_001081015		H2-K2	EG630499|Gm7035|H-2K1|H-2K1K|H-2K2|H2-K1	histocompatibility 2, K region locus 2	pseudo	40.0	23.0	8.0	10.5	17.5	8.0
Merged-chr8-79492047-1	chr8	79491547	79492547	+	898.0	f0_balb.idr	Intergenic	Intergenic	-92579.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101301557-2	chr11	101301057	101302057	+	898.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359821, intron 2 of 3)	intron (NM_001359821, intron 2 of 3)	729.0	NM_019584	56208.0	Mm.178947	NM_019584	ENSMUSG00000035086	Becn1	Atg6	beclin 1, autophagy related	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-43544241-3	chr11	43543737	43544737	+	898.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045530, intron 2 of 5)	intron (NM_001045530, intron 2 of 5)	15488.0	NM_001045530	380694.0	Mm.247595	NM_001045530	ENSMUSG00000044707	Ccnjl	Gm877	cyclin J-like	protein-coding	2.0	0.0	0.0	0.0	0.0	1.0
Merged-chr10-20769678-4	chr10	20769174	20770174	+	898.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44596.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	46.5	201.0	85.0	93.0	206.0	139.0
Merged-chr15-98789838-2	chr15	98789338	98790338	+	898.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021279)	promoter-TSS (NM_021279)	-19.0	NM_021279	22408.0	Mm.1123	NM_021279	ENSMUSG00000022997	Wnt1	Int-1|Wnt-1|sw|swaying	wingless-type MMTV integration site family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36588116-3	chr16	36587585	36588585	+	898.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-25951.0	NM_013803	12374.0	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91310884-2	chr12	91310384	91311384	+	898.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181815, intron 10 of 25)	intron (NM_181815, intron 10 of 25)	73525.0	NM_181815	75216.0	Mm.312204	NM_181815	ENSMUSG00000061533	Cep128	4930534B04Rik|5430424K18Rik|AI449708|AI480494|E230024F20	centrosomal protein 128	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-142989705-3	chr6	142989214	142990214	+	898.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25262.0	NM_011374	20449.0	Mm.260838	NM_011374	ENSMUSG00000030283	St8sia1	9330109E03Rik|GD3S|Sia-T|Siat8|Siat8a	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69414192-3	chr11	69413713	69414713	+	898.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001017426)	promoter-TSS (NM_001017426)	-538.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	8.0	12.5	14.5	6.5	15.5	14.5
Merged-chr4-62729391-3	chr4	62728883	62729883	+	898.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	55409.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr10-60080833-2	chr10	60080333	60081333	+	898.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026937, intron 9 of 10)	intron (NM_026937, intron 9 of 10)	-25424.0	NM_052994	94214.0	Mm.153429	NM_052994	ENSMUSG00000058297	Spock2	AA407235|Gcap26|mKIAA0275	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-8709277-4	chr13	8708781	8709781	+	898.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110345, intron 6 of 10)	intron (NR_110345, intron 6 of 10)	161763.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101828673-2	chr5	101828173	101829173	+	898.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63543.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	2.5
Merged-chr8-126921463-2	chr8	126920963	126921963	+	898.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	24458.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75187818-2	chr10	75187318	75188318	+	898.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24255.0	NM_153406	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143052088-2	chr7	143051588	143052588	+	898.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133655)	promoter-TSS (NM_133655)	-662.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	0.5	10.5	8.5	0.5	14.5	8.0
Merged-chr2-167929398-2	chr2	167928898	167929898	+	898.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-2929.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70215497-2	chr14	70214997	70215997	+	898.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7826.0	NM_011366	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119631084-2	chr13	119630584	119631584	+	898.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020279, intron 1 of 2)	Lx7|LINE|L1	7265.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84844097-2	chr8	84843597	84844597	+	898.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007591, exon 7 of 9)	exon (NM_007591, exon 7 of 9)	2834.0	NM_007591	12317.0	Mm.1971	NM_007591	ENSMUSG00000003814	Calr	CRT|Calregulin	calreticulin	protein-coding	4.5	13.0	4.0	0.0	2.5	4.0
Merged-chr15-79411599-1	chr15	79411099	79412099	+	898.0	f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-8296.0	NM_172608	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	2.5	5.0	9.0	4.5	11.0	5.0
Merged-chr18-40439862-4	chr18	40439356	40440356	+	898.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026135, intron 1 of 1)	intron (NM_026135, intron 1 of 1)	181495.0	NM_026135	383348.0	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-104441222-2	chr11	104440722	104441722	+	898.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 2 of 14)	intron (NM_001359634, intron 2 of 14)	1069.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128378495-2	chr7	128377995	128378995	+	898.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 4 of 4)	AT_rich|Low_complexity|Low_complexity	39677.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85276129-1	chr1	85275629	85276629	+	898.0	f1_balb.idr	Intergenic	Intergenic	-5563.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-29435204-3	chr5	29434707	29435707	+	898.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033457, exon 1 of 11)	exon (NM_001033457, exon 1 of 11)	540.0	NM_001033457	433864.0	Mm.262815	NM_001033457	ENSMUSG00000001569	Nom1	D5Kng1|Gm1040	nucleolar protein with MIF4G domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121489297-3	chr10	121488795	121489795	+	898.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-13045.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	91.0	157.0	131.5	89.5	195.5	119.0
Merged-chr2-91098310-4	chr2	91097803	91098803	+	897.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011355, intron 1 of 4)	intron (NM_011355, intron 1 of 4)	1625.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	35.0	42.5	31.5	14.5	33.5	24.0
Merged-chr1-152555217-4	chr1	152554712	152555712	+	897.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 5 of 17)	intron (NM_016846, intron 5 of 17)	70005.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-52015772-5	chr14	52015295	52016295	+	897.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253694, intron 1 of 5)	MIRb|SINE|MIR	-1070.0	NM_001033805	619301.0	Mm.475177	NM_001033805	ENSMUSG00000072571	Tmem253	G630016D24Rik	transmembrane protein 253	protein-coding	26.0	36.0	45.5	27.0	16.0	45.5
Merged-chr16-38442670-7	chr16	38442179	38443179	+	897.9523929999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9534.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	0.0	1.5	3.0	3.0	0.0	4.5
Merged-chr9-41085374-3	chr9	41084882	41085882	+	897.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	-5876.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	3.5	19.5	20.5	0.0	0.0	7.5
Merged-chr5-112297499-4	chr5	112297061	112298061	+	897.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	20870.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	1.0	23.5	5.0	5.5	9.0	14.5
Merged-chr5-105393573-4	chr5	105393067	105394067	+	897.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-22208.0	NM_001033550	433926.0	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	2210408K08Rik|R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	0.0	19.5	0.0	0.0	5.5	2.5
Merged-chr2-32360968-4	chr2	32360481	32361481	+	897.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-2029.0	NM_001252538	68379.0	Mm.170508	NM_028412	ENSMUSG00000039205	Ciz1	0610038H21Rik|2900056O04Rik|LSFR1|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115011765-6	chr5	115011263	115012263	+	897.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029012, intron 1 of 10)	CpG	239.0	NM_029012	74585.0	Mm.355894	NM_029012	ENSMUSG00000029550	Sppl3	4833416I09Rik|Psl4|Usmg3	signal peptide peptidase 3	protein-coding	30.0	36.5	30.5	30.0	36.0	31.0
Merged-chr2-15056049-4	chr2	15055569	15056569	+	897.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029466, intron 1 of 5)	intron (NM_029466, intron 1 of 5)	707.0	NM_029466	75869.0	Mm.174068	NM_029466	ENSMUSG00000017418	Arl5b	4930587A11Rik|AW146430|Arl8	ADP-ribosylation factor-like 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38074328-4	chr15	38073826	38074826	+	897.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001112721, intron 1 of 58)	intron (NM_001112721, intron 1 of 58)	4528.0	NM_001112721	70790.0	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-174564062-4	chr2	174563563	174564563	+	897.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79471.0	NM_001099328	100043757.0	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	-	zinc finger protein 831	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67175800-8	chr15	67175253	67176253	+	897.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 1 of 8)	intron (NM_009177, intron 1 of 8)	1129.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	14.0	29.5	44.5	10.5	29.5	39.5
Merged-chr17-32075296-2	chr17	32074796	32075796	+	897.9166869999999	f1_balb.idr|f1_c57bl6.idr	TTS (NR_027316)	TTS (NR_027316)	16127.0	NR_027316	435518.0	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-89779440-4	chr13	89778888	89779888	+	897.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36876.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	0.0	0.5	9.0	1.5	4.0	0.0
Merged-chr6-113751323-4	chr6	113750826	113751826	+	897.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001036684, intron 19 of 19)	A-rich|Low_complexity|Low_complexity	-10645.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-40423923-3	chr6	40423421	40424421	+	897.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356375, intron 1 of 8)	intron (NM_001356375, intron 1 of 8)	12214.0	NM_001356375	243780.0	Mm.333006	NM_175528	ENSMUSG00000037172	E330009J07Rik	AI841796|Lchn|mKIAA1147	RIKEN cDNA E330009J07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113657163-3	chr6	113656647	113657647	+	897.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	18680.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139375790-4	chr5	139375261	139376261	+	897.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	MTE2a|LTR|ERVL-MaLR	-1936.0	NM_001362206	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135740442-4	chr1	135739947	135740947	+	897.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153810, intron 2 of 3)	(CAAAC)n|Simple_repeat|Simple_repeat	11280.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-14552341-4	chr14	14551848	14552848	+	897.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-150677.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	0.0	0.0	2.5	0.0	0.0	2.5
Merged-chr5-52132285-2	chr5	52131785	52132785	+	897.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3732.0	NR_105845	102466648.0		NR_105845	ENSMUSG00000098726	Mir6417	Gm27334|mmu-mir-6417	microRNA 6417	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37622143-4	chr1	37621619	37622619	+	897.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028096, intron 7 of 9)	intron (NM_028096, intron 7 of 9)	-81103.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102755101-4	chr2	102754587	102755587	+	897.837524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077514, intron 6 of 10)	intron (NM_001077514, intron 6 of 10)	-8327.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-42383362-2	chr6	42382862	42383862	+	897.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-10094.0	NM_023580	13835.0	Mm.133330	NM_023580	ENSMUSG00000029859	Epha1	5730453L17Rik|AL033318|Eph|Esk	Eph receptor A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95838886-5	chr11	95838441	95839441	+	897.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163464, intron 1 of 7)	intron (NM_001163464, intron 1 of 7)	-3354.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-41390052-3	chr3	41389524	41390524	+	897.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103175.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77966217-2	chr10	77965717	77966717	+	897.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 3 of 33)	intron (NM_138301, intron 3 of 33)	3655.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96558407-3	chr3	96557910	96558910	+	897.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023719, exon 1 of 8)	exon (NM_023719, exon 1 of 8)	453.0	NM_001009935	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	4.5	53.0	16.0	12.5	39.5	13.0
Merged-chr5-136085558-4	chr5	136085061	136086061	+	897.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039103, intron 1 of 19)	intron (NM_001039103, intron 1 of 19)	1645.0	NM_001039103	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45015801-3	chr4	45015304	45016304	+	897.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2805.0	NM_022811	64424.0	Mm.282932	NM_022811	ENSMUSG00000028318	Polr1e	53kDa|AU042259|D030019D19Rik|Paf53|Praf1	polymerase (RNA) I polypeptide E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-130804023-3	chr3	130803537	130804537	+	897.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73639.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30591666-6	chr14	30591229	30592229	+	897.8110960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18581.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	3.5	4.0	11.5	0.0	0.0	4.5
Merged-chr12-102395786-4	chr12	102395269	102396269	+	897.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011175, exon 12 of 14)	exon (NM_011175, exon 12 of 14)	44044.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73566293-4	chr2	73565783	73566783	+	897.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007389, exon 9 of 9)	exon (NM_007389, exon 9 of 9)	14055.0	NM_007389	11435.0	Mm.4583	NM_007389	ENSMUSG00000027107	Chrna1	AI385656|AI608266|Achr-1|Acra	cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106818552-4	chr11	106818030	106819030	+	897.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166685, intron 18 of 18)	intron (NM_001166685, intron 18 of 18)	29278.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84190084-4	chr15	84189592	84190592	+	897.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_054088)	TTS (NM_054088)	-2141.0	NM_178614	68653.0	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119602075-3	chr13	119601543	119602543	+	897.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177666, intron 2 of 3)	intron (NM_001177666, intron 2 of 3)	-21776.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55148665-4	chr14	55148169	55149169	+	897.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31734.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124912128-4	chr8	124911616	124912616	+	897.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053207, intron 3 of 4)	intron (NM_053207, intron 3 of 4)	14230.0	NM_001111141	244666.0	Mm.482915	NM_001111141	ENSMUSG00000031986	Sprtn	Gm505	SprT-like N-terminal domain	protein-coding	12.5	5.5	13.5	7.0	27.5	23.5
Merged-chr1-156803421-4	chr1	156802951	156803951	+	897.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001159965)	TTS (NM_001159965)	-35572.0	NM_028333	72713.0	Mm.389206	NM_028333	ENSMUSG00000033544	Angptl1	2810039D03Rik|ANG3|ANGPT3|ANGY|ARP1	angiopoietin-like 1	protein-coding	4.0	8.5	3.0	10.0	4.0	9.5
Merged-chr19-5796947-4	chr19	5796511	5797511	+	897.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_002847, exon 1 of 1)	non-coding (NR_002847, exon 1 of 1)	-1030.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45080104-4	chr7	45079730	45080730	+	897.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11983.0	NM_026555	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	1.5	0.5	1.5	3.0	6.5	0.0
Merged-chr11-69135389-2	chr11	69134758	69135758	+	897.7000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_011786, intron 11 of 14)	intron (NM_011786, intron 11 of 14)	8881.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	11.0	24.0	25.5	32.5	44.5	49.5
Merged-chr2-73060034-4	chr2	73059540	73060540	+	897.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79594.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87634286-4	chr16	87633754	87634754	+	897.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64700.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	4.0	10.5	7.0	0.5	8.0	3.5
Merged-chr4-141977537-4	chr4	141977045	141978045	+	897.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 5 of 31)	intron (NM_177868, intron 5 of 31)	-5447.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45030713-6	chr19	45030067	45031067	+	897.680542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195265, intron 10 of 15)	MIRb|SINE|MIR	12432.0	NM_001130526	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	0.5	0.5	0.0	0.0	5.0	0.0
Merged-chr4-132216894-2	chr4	132216394	132217394	+	897.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	3695.0	NR_036572	664903.0	Mm.425212	NR_036572		Rps15a-ps4	Gm13253|Lethe	ribosomal protein S15A, pseudogene 4	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127273957-4	chr2	127273450	127274450	+	897.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139308, intron 1 of 7)	(TG)n|Simple_repeat|Simple_repeat	3721.0	NM_139308	99138.0	Mm.41271	NM_139308	ENSMUSG00000027367	Stard7	AI852671|AL022671|AW544915	START domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150009556-1	chr4	150009056	150010056	+	897.6666869999999	f0_balb.idr	promoter-TSS (NM_173371)	promoter-TSS (NM_173371)	-533.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110447472-3	chr12	110446986	110447986	+	897.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001135001, intron 1 of 13)	CpG	307.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127266819-3	chr10	127266338	127267338	+	897.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027151, intron 1 of 13)	CpG	576.0	NM_001190453	69654.0	Mm.167537	NM_027151	ENSMUSG00000025410	Dctn2	2310042E05Rik|C130077D06Rik|C87049|DCTN-50|GMP23-48K|RBP50|p50	dynactin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120744633-2	chr8	120744133	120745133	+	897.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301811, intron 3 of 8)	intron (NM_001301811, intron 3 of 8)	5994.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45312019-4	chr9	45311509	45312509	+	897.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7091.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	4.0	0.5	1.5	3.0	1.0	1.0
Merged-chr15-83415531-3	chr15	83415034	83416034	+	897.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358643, intron 1 of 9)	intron (NM_001358643, intron 1 of 9)	17316.0	NM_011862	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63508411-3	chr4	63507930	63508930	+	897.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-12439.0	NM_001008791	73750.0	Mm.300397	NM_028640	ENSMUSG00000039137	Whrn	1110035G07Rik|AW122018|AW742671|C430046P22Rik|Dfnb31|Ush2d|wi	whirlin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124297505-4	chr6	124296990	124297990	+	897.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_A|LTR|ERVK	-7161.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44247249-3	chr7	44246736	44247736	+	897.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025880, intron 1 of 5)	intron (NM_025880, intron 1 of 5)	514.0	NM_025880	668661.0	Mm.274492	NM_025880	ENSMUSG00000045411	2410002F23Rik	-	RIKEN cDNA 2410002F23 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-58576171-5	chr18	58575676	58576676	+	897.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081072, intron 2 of 9)	intron (NM_001081072, intron 2 of 9)	19936.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	21.5	17.0	27.5	18.0	14.0	29.0
Merged-chr7-45463504-2	chr7	45463004	45464004	+	897.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007527, intron 4 of 5)	intron (NM_007527, intron 4 of 5)	3394.0	NM_007527	12028.0	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8771028-4	chr19	8770544	8771544	+	897.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025791)	promoter-TSS (NM_025791)	48.0	NM_025791	66836.0	Mm.440071	NM_025791	ENSMUSG00000010097	Tmem223	0610006I08Rik	transmembrane protein 223	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-60779768-4	chr15	60779180	60780180	+	897.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-43285.0	NR_030696	320469.0	Mm.230853	NM_177166		9930014A18Rik	-	RIKEN cDNA 9930014A18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138447632-4	chr4	138447140	138448140	+	897.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7508.0	NM_025451	66259.0	Mm.41603	NM_025451	ENSMUSG00000046447	Camk2n1	1810006K23Rik|AI848599|AI891706	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71328962-4	chr2	71328487	71329487	+	897.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 4 of 17)	intron (NM_172436, intron 4 of 17)	38567.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-9388679-4	chr11	9388160	9389160	+	897.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 31 of 61)	intron (NM_178259, intron 31 of 61)	196718.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4789116-10	chr7	4788671	4789671	+	897.6166380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029384, exon 1 of 2)	exon (NM_029384, exon 1 of 2)	389.0	NM_029384	664968.0	Mm.292837	NM_029384	ENSMUSG00000030431	Tmem238	2210411K11Rik	transmembrane protein 238	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-43743791-3	chr9	43743311	43744311	+	897.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021424)	promoter-TSS (NM_021424)	-765.0	NM_021424	58235.0	Mm.335096	NM_021424	ENSMUSG00000032012	Nectin1	AI835281|AW549174|Cd111|HIgR|HveC|PRR|PRR1|Pvrl1|nectin-1	nectin cell adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67378000-3	chr10	67377491	67378491	+	897.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92710.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97939641-3	chr15	97939152	97940152	+	897.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24577.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68104763-3	chr10	68104253	68105253	+	897.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 8 of 9)	intron (NM_023598, intron 8 of 9)	125183.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	2.0	11.0	6.0	5.5	23.5	9.5
Merged-chr8-25196594-4	chr8	25196115	25197115	+	897.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177089, intron 2 of 12)	intron (NM_177089, intron 2 of 12)	4927.0	NM_199323	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	5.0	16.5	9.5	13.0	9.0	11.5
Merged-chr8-72136894-4	chr8	72136416	72137416	+	897.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001491, intron 1 of 7)	(TG)n|Simple_repeat|Simple_repeat	1624.0	NM_001001491	326618.0	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	7.5	9.0	13.0	6.5	7.0	8.0
Merged-chr11-77239858-4	chr11	77239363	77240363	+	897.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 1 of 14)	intron (NM_177710, intron 1 of 14)	23438.0	NM_177710	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73107403-4	chr17	73106895	73107895	+	897.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177968)	promoter-TSS (NM_001177968)	-590.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103790230-3	chr3	103789702	103790702	+	897.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301304, intron 1 of 15)	intron (NM_001301304, intron 1 of 15)	1073.0	NM_001301306	15257.0	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	23.0	81.5	64.5	38.5	71.5	47.0
Merged-chr11-85844259-4	chr11	85843749	85844749	+	897.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	11634.0	NM_009324	21385.0	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166083631-4	chr2	166083130	166084130	+	897.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252579, intron 10 of 20)	intron (NM_001252579, intron 10 of 20)	71655.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	3.0	1.5	2.0	3.5	5.5	0.5
Merged-chr6-83137729-4	chr6	83137219	83138219	+	897.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_133641, exon 1 of 12)	5' UTR (NM_133641, exon 1 of 12)	635.0	NM_133641	20166.0	Mm.4139	NM_009106	ENSMUSG00000034930	Rtkn	-	rhotekin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20311792-4	chr13	20311289	20312289	+	897.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 13 of 21)	intron (NM_080288, intron 13 of 21)	-161201.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110863108-4	chr7	110862605	110863605	+	897.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053247)	promoter-TSS (NM_053247)	-152.0	NM_053247	114332.0	Mm.396078	NM_053247	ENSMUSG00000030787	Lyve1	1200012G08Rik|Crsbp-1|Lyve-1|Xlkd1	lymphatic vessel endothelial hyaluronan receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94857989-4	chr8	94857496	94858496	+	897.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009090, intron 2 of 8)	CpG-14378	546.0	NM_009090	20021.0	Mm.292492	NM_009090	ENSMUSG00000031783	Polr2c	33kDa|RPB3|Rpo2-3|mRBP31	polymerase (RNA) II (DNA directed) polypeptide C	protein-coding	0.0	7.0	2.0	0.0	2.5	1.5
Merged-chr19-8683248-4	chr19	8682765	8683765	+	897.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001112697, exon 3 of 3)	3' UTR (NM_001112697, exon 3 of 3)	19260.0	NM_001112697	12669.0	Mm.240607	NM_007698	ENSMUSG00000032773	Chrm1	Chrm-1|M1|M1R	cholinergic receptor, muscarinic 1, CNS	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65722726-4	chr5	65722207	65723207	+	897.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_I-int|LTR|ERV1	-24851.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	10.0	11.5	18.5	5.5	15.5	14.5
Merged-chr10-41517990-4	chr10	41517484	41518484	+	897.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie7|DNA|hAT-Charlie	-1516.0	NM_016898	53599.0	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-66538075-3	chr6	66537571	66538571	+	897.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355624, intron 3 of 5)	intron (NM_001355624, intron 3 of 5)	2850.0	NM_001355624	56150.0	Mm.489653	NM_019499	ENSMUSG00000029910	Mad2l1	AA673185|MAD2	MAD2 mitotic arrest deficient-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150788903-3	chr2	150788401	150789401	+	897.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153781, intron 1 of 19)	intron (NM_153781, intron 1 of 19)	2105.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76695114-4	chr16	76694606	76695606	+	897.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83986.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-17007332-14	chr11	17006843	17007843	+	897.535706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	1375.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57440757-3	chr9	57440236	57441236	+	897.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357914)	promoter-TSS (NM_001357914)	-622.0	NM_001357916	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124857909-2	chr6	124857409	124858409	+	897.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013534)	promoter-TSS (NM_013534)	-222.0	NM_013534	14789.0	Mm.35708	NM_013534	ENSMUSG00000023191	P3h3	BC016431|Grcb|Leprel2	prolyl 3-hydroxylase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25127946-2	chr7	25127446	25128446	+	897.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163556, intron 1 of 13)	intron (NM_001163556, intron 1 of 13)	4514.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73932845-2	chr17	73932345	73933345	+	897.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 6 of 35)	intron (NM_011723, intron 6 of 35)	17351.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.0	0.0	2.0	0.0	0.0	2.0
Merged-chr10-39386374-4	chr10	39385872	39386872	+	897.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122893, intron 1 of 13)	intron (NM_001122893, intron 1 of 13)	16573.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37622806-4	chr13	37622277	37623277	+	897.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-203261.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-73753014-4	chr18	73752514	73753514	+	897.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053255, intron 1 of 3)	PB1D10|SINE|Alu	1465.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	85.5	126.5	103.5	44.5	115.0	58.5
Merged-chr2-4611267-2	chr2	4610767	4611767	+	897.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347086, exon 25 of 25)	3' UTR (NM_001347086, exon 25 of 25)	40868.0	NM_026045	67229.0	Mm.38529	NM_026045	ENSMUSG00000039449	Prpf18	2810441A10Rik	pre-mRNA processing factor 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145235386-2	chr4	145234886	145235886	+	897.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	ORR1D1|LTR|ERVL-MaLR	11484.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123580296-2	chr5	123579796	123580796	+	897.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019765, intron 22 of 23)	intron (NM_019765, intron 22 of 23)	-7281.0	NM_029929	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	5.5	10.5	0.5	5.5	0.5	4.5
Merged-chr10-117819891-2	chr10	117819391	117820391	+	897.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 5 of 7)	intron (NM_024457, intron 5 of 7)	26083.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85591292-2	chr1	85590804	85591804	+	897.5	f0_balb.idr|f1_balb.idr	intron (NM_030194, intron 4 of 11)	intron (NM_030194, intron 4 of 11)	7506.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118167176-2	chr11	118166676	118167676	+	897.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 12 of 12)	intron (NM_001112700, intron 12 of 12)	-37957.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181675648-4	chr2	181675152	181676152	+	897.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4012.0	NM_009236	20672.0	Mm.264904	NM_009236	ENSMUSG00000046470	Sox18	AI385749|Ra|Ragl	SRY (sex determining region Y)-box 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80140653-2	chr17	80140153	80141153	+	897.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176963, intron 2 of 6)	intron (NM_176963, intron 2 of 6)	13182.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112646952-2	chr12	112646452	112647452	+	897.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013929, exon 2 of 4)	exon (NM_013929, exon 2 of 4)	2124.0	NM_013929	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60218980-2	chr11	60218480	60219480	+	897.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358315, intron 1 of 18)	MIR|SINE|MIR	1647.0	NM_011480	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-151858919-2	chr4	151858419	151859419	+	897.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 1 of 23)	intron (NM_001081557, intron 1 of 23)	2849.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45952827-2	chr9	45952327	45953327	+	897.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172257, exon 3 of 26)	exon (NM_172257, exon 3 of 26)	-1159.0	NR_152206	100101457.0	Mm.397964	NR_152206	ENSMUSG00000111329	A830035O19Rik	-	RIKEN cDNA A830035O19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145828977-2	chr6	145828477	145829477	+	897.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20594.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148325609-2	chr5	148325109	148326109	+	897.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	60392.0	NM_001359505	77521.0	Mm.244177	NM_029920	ENSMUSG00000029651	Mtus2	5730592G18Rik|A730013O20Rik|AU067634|C130038G02Rik|Cazip|Gm763|mKIAA0774	microtubule associated tumor suppressor candidate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-17742052-2	chr14	17741552	17742552	+	897.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 1 of 9)	B4A|SINE|B4	81092.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191574513-2	chr1	191574013	191575013	+	897.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305233, intron 1 of 15)	intron (NM_001305233, intron 1 of 15)	1031.0	NM_029766	76843.0	Mm.189102	NM_029766	ENSMUSG00000037474	Dtl	2810047L02Rik|5730564G15Rik|L2dtl|Ramp	denticleless E3 ubiquitin protein ligase	protein-coding	4.0	16.5	29.0	0.0	20.5	11.0
Merged-chr2-10081935-2	chr2	10081435	10082435	+	897.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025280, intron 1 of 4)	B1_Mur4|SINE|Alu	1323.0	NM_025280	16588.0	Mm.35498	NM_025280	ENSMUSG00000037262	Kin	Kin17	Kin17 DNA and RNA binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184534244-4	chr1	184533729	184534729	+	897.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040472, intron 2 of 5)	intron (NR_040472, intron 2 of 5)	23462.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-28806522-2	chr3	28806022	28807022	+	897.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026517, exon 2 of 4)	exon (NM_026517, exon 2 of 4)	1014.0	NM_026517	68028.0	Mm.21724	NM_026517	ENSMUSG00000039221	Rpl22l1	3110001N18Rik|AU041196	ribosomal protein L22 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39761563-3	chr1	39761055	39762055	+	897.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40566.0	NM_001145660	619289.0	Mm.334107	NM_001145660	ENSMUSG00000057173	Rfx8	4933400N17Rik	regulatory factor X 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-70532211-4	chr18	70531684	70532684	+	897.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1863.0	NM_001289515	26447.0	Mm.244352	NM_011972	ENSMUSG00000038425	Poli	Rad30b	polymerase (DNA directed), iota	protein-coding	19.5	43.5	42.5	31.5	71.0	53.0
Merged-chr14-56777625-4	chr14	56777128	56778128	+	897.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025682, intron 1 of 8)	CpG	690.0	NM_001360420	66645.0	Mm.20129	NM_025682	ENSMUSG00000021938	Pspc1	5730470C09Rik|AI327109|AI449052|PSP1	paraspeckle protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-69862678-4	chr14	69862185	69863185	+	897.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 3 of 6)	L2a|LINE|L2	22278.0	NM_028526	73523.0	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100227226-4	chr15	100226742	100227742	+	897.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007497)	promoter-TSS (NM_007497)	-617.0	NM_007497	11908.0	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	22.5	48.5	40.5	49.0	45.5	50.0
Merged-chr18-84858317-3	chr18	84857806	84858806	+	897.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348159, intron 1 of 5)	intron (NM_001348159, intron 1 of 5)	6968.0	NM_001348159	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86274364-3	chr15	86273863	86274863	+	897.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 4 of 12)	intron (NM_145476, intron 4 of 12)	-3312.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43351368-3	chr7	43350871	43351871	+	897.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271019)	promoter-TSS (NM_001271019)	30.0	NM_145581	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-85887542-3	chr3	85887009	85888009	+	897.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177130)	promoter-TSS (NM_177130)	9.0	NM_177130	320302.0	Mm.482978	NM_177130	ENSMUSG00000031286	Glt28d2	4732486J07Rik|Glt28d1l	glycosyltransferase 28 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9066058-4	chr19	9065447	9066447	+	897.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286518, intron 6 of 6)	intron (NM_001286518, intron 6 of 6)	22009.0	NM_011681	22287.0	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-53603560-4	chr9	53603068	53604068	+	897.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144784, intron 1 of 11)	intron (NM_144784, intron 1 of 11)	6782.0	NM_144784	110446.0	Mm.293233	NM_144784	ENSMUSG00000032047	Acat1	6330585C21Rik|Acat	acetyl-Coenzyme A acetyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32610306-4	chr5	32609819	32610819	+	897.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205133)	promoter-TSS (NM_001205133)	-852.0	NM_001205133	22612.0	Mm.4558	NM_009535	ENSMUSG00000014932	Yes1	Yes|p61-Yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184807839-4	chr1	184807336	184808336	+	897.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290273, intron 1 of 6)	B3A|SINE|B2	3464.0	NM_001290273	66112.0	Mm.272457	NM_001081361	ENSMUSG00000026621	Marc1	1300013F15Rik|Mosc1	mitochondrial amidoxime reducing component 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8902813-4	chr12	8902322	8903322	+	897.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-18485.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	3.0	13.5	5.0	9.0	25.0	9.0
Merged-chr3-88325020-4	chr3	88324508	88325508	+	897.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020003)	promoter-TSS (NM_020003)	-15.0	NM_020003	56700.0	Mm.439922	NM_020003	ENSMUSG00000001418	Glmp	0610031J06Rik|AB027141|NCU-G1	glycosylated lysosomal membrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-43833065-4	chr10	43832587	43833587	+	897.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131055, exon 3 of 3)	non-coding (NR_131055, exon 3 of 3)	7180.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27908772-6	chr17	27908258	27909258	+	897.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286040)	promoter-TSS (NM_001286040)	484.0	NM_026836	68776.0	Mm.267998	NM_026836	ENSMUSG00000024218	Taf11	1110038O14Rik|AI115401|AL024207|AW552398|PRO214|TAF2I|TAFII28	TATA-box binding protein associated factor 11	protein-coding	31.0	97.0	41.0	21.0	63.5	51.0
Merged-chr13-91808359-3	chr13	91807865	91808865	+	897.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145453)	promoter-TSS (NM_145453)	-669.0	NM_145453	69085.0	Mm.52356	NM_145453	ENSMUSG00000021621	Zcchc9	1810019C21Rik	zinc finger, CCHC domain containing 9	protein-coding	5.0	14.0	15.5	2.0	3.0	2.5
Merged-chr7-49923604-4	chr7	49923096	49924096	+	897.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146013, intron 5 of 15)	intron (NM_001146013, intron 5 of 15)	11896.0	NM_148931	104245.0	Mm.207053	NM_148931	ENSMUSG00000039728	Slc6a5	Glyt2|prestin	solute carrier family 6 (neurotransmitter transporter, glycine), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-157014279-4	chr1	157013897	157014897	+	897.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74771.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	119.0	112.0	118.5	75.0	207.5	160.0
Merged-chr18-80932752-4	chr18	80932256	80933256	+	897.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015805, intron 1 of 28)	MIR|SINE|MIR	1302.0	NM_001201569	50771.0	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31558194-4	chr17	31557735	31558735	+	897.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-6538.0	NR_027493	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88677535-4	chr3	88677034	88678034	+	897.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	-8253.0	NM_028814	74200.0	Mm.251800	NM_028814	ENSMUSG00000028060	2810403A07Rik	A430106P18Rik|AI256352|AI451678|Blom7|Khdc4|Kiaa0907	RIKEN cDNA 2810403A07 gene	protein-coding	0.0	0.0	1.0	0.0	2.0	0.5
Merged-chr6-83488708-4	chr6	83488195	83489195	+	897.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149734, intron 3 of 6)	intron (NR_149734, intron 3 of 6)	18274.0	NM_013764	27369.0	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	7.0	9.0	8.5	7.0	8.5	9.0
Merged-chr11-76993109-4	chr11	76992612	76993612	+	897.337524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5485.0	NM_010484	15567.0	Mm.300318	NM_010484	ENSMUSG00000020838	Slc6a4	5-HTT|AI323329|Htt|Sert	solute carrier family 6 (neurotransmitter transporter, serotonin), member 4	protein-coding	7.0	10.5	1.5	5.0	3.5	6.0
Merged-chr11-86598732-2	chr11	86598232	86599232	+	897.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 10 of 11)	L2b|LINE|L2	-14574.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128725054-2	chr8	128724554	128725554	+	897.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010578, intron 14 of 15)	intron (NM_010578, intron 14 of 15)	39400.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-33246903-4	chr4	33246401	33247401	+	897.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033225, intron 1 of 1)	intron (NM_001033225, intron 1 of 1)	1886.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22120273-2	chr16	22119773	22120773	+	897.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	43026.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44395789-3	chr11	44395266	44396266	+	897.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4297.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	0.0	0.0	4.0	0.0	0.0	3.0
Merged-chr6-114294383-4	chr6	114293889	114294889	+	897.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178703, intron 1 of 15)	intron (NM_178703, intron 1 of 15)	11754.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46555518-3	chr17	46555028	46556028	+	897.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020493, exon 1 of 7)	exon (NM_020493, exon 1 of 7)	634.0	NM_020493	20807.0	Mm.45044	NM_020493	ENSMUSG00000015605	Srf	AW049942|AW240594	serum response factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14336036-1	chr2	14335536	14336536	+	897.3333130000001	f0_balb.idr	Intergenic	Intergenic	-52362.0	NM_001012305	277468.0	Mm.44662	NM_001012305	ENSMUSG00000036949	Slc39a12	AW046938|Gm731	solute carrier family 39 (zinc transporter), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73476413-3	chr13	73475924	73476924	+	897.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145376, intron 1 of 13)	intron (NM_145376, intron 1 of 13)	9041.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134513016-3	chr4	134512514	134513514	+	897.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081099, intron 1 of 2)	MURVY-LTR|LTR|ERV1	2015.0	NM_001081099	69885.0	Mm.141592	NM_001081099	ENSMUSG00000078521	Aunip	2610002D18Rik|Clhc1	aurora kinase A and ninein interacting protein	protein-coding	5.0	12.5	9.0	2.0	4.5	0.0
Merged-chr16-57571325-4	chr16	57570815	57571815	+	897.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001177871, exon 2 of 2)	exon (NM_001177871, exon 2 of 2)	22073.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	25.0	10.0	17.0	8.5	25.0	9.0
Merged-chr8-94804739-4	chr8	94804221	94805221	+	897.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5732.0	NM_011332	20295.0	Mm.41988	NM_011332	ENSMUSG00000031780	Ccl17	Abcd-2|Scya17|Scya17l|Tarc	chemokine (C-C motif) ligand 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-99122640-3	chr4	99122106	99123106	+	897.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1691.0	NM_026082	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	0.0	0.0	0.5	1.5	2.0	0.0
Merged-chr9-110710815-3	chr9	110710312	110711312	+	897.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 5 of 6)	intron (NM_028312, intron 5 of 6)	31798.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9883220-4	chr13	9882725	9883725	+	897.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 4 of 4)	intron (NM_033269, intron 4 of 4)	-117904.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70289512-3	chr11	70289009	70290009	+	897.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33021.0	NM_145684	11685.0	Mm.274093	NM_145684	ENSMUSG00000018907	Alox12e	12-LOX|8-LOX|AW259591|Alox12-ps1|Alox12-ps2|Aloxe|e-LOX1	arachidonate lipoxygenase, epidermal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-12035057-3	chr4	12034565	12035565	+	897.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52892.0	NM_177861	329795.0	Mm.475125	NM_177861	ENSMUSG00000049488	Tmem67	5330408M12Rik|B230117O07|b2b1163.1Clo|b2b1291.1Clo	transmembrane protein 67	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154981923-3	chr4	154981424	154982424	+	897.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001305804)	TTS (NM_001305804)	17801.0	NR_131230	269614.0	Mm.30042	NM_172990	ENSMUSG00000029056	Pank4	D030031I12Rik|R75150	pantothenate kinase 4	protein-coding	0.0	5.5	4.5	7.5	0.0	0.0
Merged-chr16-34000860-4	chr16	34000362	34001362	+	897.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 51 of 59)	intron (NM_177357, intron 51 of 59)	-33824.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69333697-4	chr12	69333179	69334179	+	897.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025441, intron 16 of 32)	B3|SINE|B2	23497.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	2.0	19.0	15.0	8.0	23.5	13.5
Merged-chr1-165768490-4	chr1	165767991	165768991	+	897.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149310, intron 2 of 4)	B4A|SINE|B4	4733.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114852537-4	chr11	114852001	114853001	+	897.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_147217, intron 1 of 3)	CpG	471.0	NM_147217	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35107351-4	chr9	35106863	35107863	+	897.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-9365.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20470440-6	chr11	20469734	20470734	+	897.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-73019.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	2.0	9.5	13.0	4.0	2.5	3.5
Merged-chr12-100501439-4	chr12	100500942	100501942	+	897.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 1 of 19)	intron (NM_001033213, intron 1 of 19)	19380.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88123125-4	chr17	88122649	88123649	+	897.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2363.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128517938-3	chr8	128517424	128518424	+	897.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	158683.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	6.0	2.5	6.0	2.5	4.5	2.0
Merged-chr9-70731271-4	chr9	70730758	70731758	+	897.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007399, intron 4 of 15)	L2|LINE|L2	52276.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27203607-5	chr17	27203034	27204034	+	897.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146075, intron 1 of 8)	intron (NM_146075, intron 1 of 8)	904.0	NM_146075	224640.0	Mm.29689	NM_146075	ENSMUSG00000044857	Lemd2	BC026588|Lem2|NET25	LEM domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-48016293-4	chr6	48015797	48016797	+	897.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31497.0	NM_001347139	72306.0	Mm.381553	NM_001081382	ENSMUSG00000071477	Zfp777	2500002G23Rik	zinc finger protein 777	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr2-45692973-4	chr2	45692487	45693487	+	897.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3618.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6356404-2	chr4	6355902	6356902	+	897.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-9278.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	35.0	70.0	63.0	23.5	77.5	46.5
Merged-chr19-37154595-2	chr19	37154095	37155095	+	897.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_198300, intron 2 of 10)	ORR1F|LTR|ERVL-MaLR	-19248.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5273037-4	chr11	5272551	5273551	+	897.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21B|LTR|ERV1	-11441.0	NM_032396	84035.0	Mm.209989	NM_032396	ENSMUSG00000020393	Kremen1	AV002070|Kremen|Krm1	kringle containing transmembrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3387054-2	chr19	3386510	3387510	+	897.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1847.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51062973-4	chr14	51062460	51063460	+	897.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5718.0	NM_001011875	497106.0	Mm.379740	NM_001011875	ENSMUSG00000068407	Rnase12	Rai1	ribonuclease, RNase A family, 12 (non-active)	protein-coding	33.5	32.5	26.5	20.0	40.0	24.0
Merged-chr14-65380660-4	chr14	65380175	65381175	+	897.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199029, intron 1 of 9)	intron (NM_199029, intron 1 of 9)	21999.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97718042-4	chr11	97717610	97718610	+	897.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_054051, exon 10 of 10)	3' UTR (NM_054051, exon 10 of 10)	14676.0	NM_011971	26446.0	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	1.0	9.5	6.0	1.0	6.5	3.0
Merged-chr19-11375450-4	chr19	11374930	11375930	+	897.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310331)	promoter-TSS (NM_001310331)	-58.0	NM_001310331	666907.0		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-105009881-4	chr12	105009377	105010377	+	897.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172500)	promoter-TSS (NM_172500)	-68.0	NM_172500	212073.0	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	KASH3|nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69299438-2	chr12	69298934	69299934	+	897.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_027117, intron 1 of 12)	intron (NM_027117, intron 1 of 12)	2753.0	NM_027117	69554.0	Mm.234368	NM_027117	ENSMUSG00000020978	Klhdc2	2310022K15Rik|D12Ertd522e|HCLP-1|LCP	kelch domain containing 2	protein-coding	18.0	23.5	14.5	0.0	2.0	9.5
Merged-chr17-34633474-4	chr17	34632979	34633979	+	897.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3793.0	NM_030890	260297.0	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31|SynDIG4	proline-rich transmembrane protein 1	protein-coding	24.5	54.0	30.5	35.0	44.5	50.0
Merged-chr9-56075438-4	chr9	56074943	56075943	+	897.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14533.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106753675-3	chr8	106753175	106754175	+	897.244446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173037, intron 14 of 17)	intron (NM_173037, intron 14 of 17)	70607.0	NM_173037	272538.0	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	0.0	3.5	0.0	0.5	1.0	2.0
Merged-chr6-129399293-3	chr6	129398813	129399813	+	897.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204253, intron 1 of 3)	RLTR21|LTR|ERVK	2016.0	NM_001204239	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93816015-3	chr16	93815537	93816537	+	897.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-16084.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	68.5	142.0	101.5	78.0	138.5	94.5
Merged-chr6-90538080-3	chr6	90537596	90538596	+	897.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12697.0	NM_001356412	107747.0	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92345212-4	chr5	92344730	92345730	+	897.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	3659.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	1.0	4.0	1.5	4.5	1.5	2.0
Merged-chr2-28585376-4	chr2	28584876	28585876	+	897.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2097.0	NM_001290484	70239.0	Mm.274120	NM_148928	ENSMUSG00000026816	Gtf3c5	2700084A09Rik|TFIIIC63|TFiiiC2-63	general transcription factor IIIC, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91476819-4	chr2	91476337	91477337	+	897.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 10 of 37)	MIRb|SINE|MIR	19306.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	2.5	20.0	31.5	12.0	15.0	18.5
Merged-chr1-172143775-4	chr1	172143274	172144274	+	897.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4241.0	NR_151641	98193.0	Mm.159915	NM_153555	ENSMUSG00000026554	Dcaf8	AA408877|AA433120|AA792214|AU018973|C76055|D1Dau35e|D1Ucla4|H326|Wdr42a	DDB1 and CUL4 associated factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-35296038-4	chr15	35295554	35296554	+	897.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054049)	promoter-TSS (NM_054049)	-58.0	NM_054049	107587.0	Mm.46336	NM_054049	ENSMUSG00000022330	Osr2	5430409I15Rik|Osr2A|Osr2B	odd-skipped related 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95180597-3	chr4	95180096	95181096	+	897.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-128374.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11177548-4	chr16	11177036	11178036	+	897.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151506)	promoter-TSS (NR_151506)	-640.0	NR_151506	105246071.0	Mm.426799	NR_151506		4930509G22Rik	-	RIKEN cDNA 4930509G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91509551-4	chr6	91509069	91510069	+	897.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009531, intron 2 of 15)	intron (NM_009531, intron 2 of 15)	6319.0	NM_009531	22591.0	Mm.2806	NM_009531	ENSMUSG00000030094	Xpc	-	xeroderma pigmentosum, complementation group C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40095553-4	chr10	40095064	40096064	+	897.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	46690.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79961243-3	chr10	79960659	79961659	+	897.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175450, intron 2 of 9)	intron (NM_175450, intron 2 of 9)	1007.0	NM_175450	216156.0	Mm.35828	NM_175450	ENSMUSG00000035754	Wdr18	2310012I10Rik|AU044733|AW122032	WD repeat domain 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38952663-4	chr6	38952165	38953165	+	897.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	intron (NM_011539, intron 3 of 12)	33679.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-17773368-4	chr13	17772916	17773916	+	897.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027118, intron 1 of 13)	intron (NM_027118, intron 1 of 13)	25943.0	NR_035412	100316665.0		NR_035412	ENSMUSG00000080574	Mir466i	Mirn466i|mmu-mir-466i	microRNA 466i	ncRNA	3.0	10.0	0.0	3.0	10.0	0.5
Merged-chr6-92127033-4	chr6	92126501	92127501	+	897.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347342, intron 2 of 14)	intron (NM_001347342, intron 2 of 14)	34568.0	NM_001347342	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-14506642-3	chr1	14506139	14507139	+	897.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-196440.0	NM_010164	14048.0	Mm.250185	NM_010164	ENSMUSG00000025932	Eya1	bor	EYA transcriptional coactivator and phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34826437-3	chr19	34825926	34826926	+	897.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114339, intron 3 of 6)	intron (NM_001114339, intron 3 of 6)	-5653.0	NR_029783	723826.0		NR_029783	ENSMUSG00000065594	Mir107	Mirn107|mir-107|mmu-mir-107	microRNA 107	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139366744-3	chr7	139366250	139367250	+	897.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22359.0	NM_183144	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-8312519-3	chr5	8311986	8312986	+	897.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 3 of 28)	MIRc|SINE|MIR	55674.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-156237161-3	chr4	156236680	156237680	+	897.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021303, intron 2 of 18)	CpG-10794	1170.0	NM_021303	57741.0	Mm.423051	NM_021303	ENSMUSG00000095567	Noc2l	AA410003|AF155546|NIR	NOC2 like nucleolar associated transcriptional repressor	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr11-45944065-2	chr11	45943565	45944565	+	897.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028185, intron 1 of 3)	intron (NM_028185, intron 1 of 3)	870.0	NM_028185	72290.0	Mm.249827	NM_028185	ENSMUSG00000044847	Lsm11	2210404M20Rik|AV079530	U7 snRNP-specific Sm-like protein LSM11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80368617-2	chr10	80368117	80369117	+	897.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	1020.0	NR_038088	100568459.0		NR_038088	ENSMUSG00000115783	Bc1	Gm24367	brain cytoplasmic RNA 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-89697740-3	chr10	89697243	89698243	+	897.1555789999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130956, intron 2 of 2)	intron (NR_130956, intron 2 of 2)	11380.0	NR_130956	69002.0	Mm.293947	NR_130956	ENSMUSG00000097383	1500026H17Rik	-	RIKEN cDNA 1500026H17 gene	ncRNA	0.0	2.0	1.0	4.5	8.5	14.0
Merged-chr3-9610159-4	chr3	9609668	9610668	+	897.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133218)	promoter-TSS (NM_133218)	-83.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20745711-5	chr18	20745192	20746192	+	897.1333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019737, exon 1 of 9)	5' UTR (NM_019737, exon 1 of 9)	712.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74379528-10	chr1	74379148	74380148	+	897.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013612, intron 4 of 14)	intron (NM_013612, intron 4 of 14)	4445.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117673690-4	chr8	117673184	117674184	+	897.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357272)	promoter-TSS (NM_001357272)	5.0	NM_001357273	74032.0	Mm.296302	NM_028725	ENSMUSG00000034308	Sdr42e1	4632417N05Rik|AI117603	short chain dehydrogenase/reductase family 42E, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7569161-4	chr9	7568676	7569676	+	897.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008611)	TTS (NM_008611)	-2220.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84635806-4	chr2	84635307	84636307	+	897.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007615, intron 1 of 19)	intron (NM_007615, intron 1 of 19)	13673.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	4.0	12.0	7.0	4.0	17.0	5.0
Merged-chr15-96735896-4	chr15	96735432	96736432	+	897.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36204.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-57980495-4	chr11	57980009	57981009	+	897.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28555.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	15.5	14.5	43.5	1.0	9.5	7.5
Merged-chr1-133418329-4	chr1	133417817	133418817	+	897.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011439, intron 1 of 13)	intron (NM_011439, intron 1 of 13)	5895.0	NM_011439	20668.0	Mm.8575	NM_011439	ENSMUSG00000070643	Sox13	AA407916|AW259412|AW540933|Sox-13	SRY (sex determining region Y)-box 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116622332-2	chr11	116621832	116622832	+	897.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	1920.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65703434-3	chr5	65702953	65703953	+	897.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5597.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	7.5	7.0	15.5	8.0	0.0	3.5
Merged-chr5-65987003-4	chr5	65986498	65987498	+	897.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_027961)	TTS (NR_027961)	17287.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-66107071-4	chr17	66106592	66107592	+	897.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4454.0	NM_026833	68767.0	Mm.296545	NM_026833	ENSMUSG00000024101	Washc1	1110049F14Rik|ORF19|Wash|Wash1	WASH complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-127815541-4	chr8	127815074	127816074	+	897.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4A|LINE|L1	462651.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	3.5	10.5	18.5	10.0	14.5	10.5
Merged-chr4-88840223-4	chr4	88839732	88840732	+	897.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1584.0	NM_010504	15967.0	Mm.377088	NM_010504	ENSMUSG00000070904	Ifna4	Ifa4	interferon alpha 4	protein-coding	1.5	2.0	10.0	1.0	9.0	2.0
Merged-chr8-68348624-4	chr8	68348130	68349130	+	897.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028182)	TTS (NM_028182)	-19829.0	NR_038189	73609.0	Mm.443247	NR_038181	ENSMUSG00000085197	1700125H03Rik	4930510D22Rik	RIKEN cDNA 1700125H03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6587024-4	chr15	6586514	6587514	+	897.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011815, intron 1 of 17)	intron (NM_011815, intron 1 of 17)	7167.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86961729-3	chr17	86961199	86962199	+	897.0499880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1412.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	15.0	7.5	5.5	5.5	37.5	22.0
Merged-chr16-57495894-4	chr16	57495381	57496381	+	897.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-53361.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135658382-4	chr7	135657812	135658812	+	897.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316681, intron 3 of 17)	intron (NM_001316681, intron 3 of 17)	-5998.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17837920-4	chr6	17837438	17838438	+	897.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 3 of 15)	intron (NM_022332, intron 3 of 15)	88768.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114929632-2	chr6	114929132	114930132	+	897.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	-7811.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91967491-1	chr2	91966991	91967991	+	897.0	f1_balb.idr	Intergenic	RSINE1|SINE|B4	-3928.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0.0	5.5	4.0	15.0	6.0	0.0
Merged-chr9-108849460-2	chr9	108848900	108849900	+	897.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001359573, exon 35 of 36)	exon (NM_001359573, exon 35 of 36)	-4643.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	0.0	2.5	0.0	0.0	0.5	2.0
Merged-chr10-19005707-2	chr10	19005207	19006207	+	897.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009397, exon 6 of 9)	exon (NM_009397, exon 6 of 9)	6256.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-80225024-1	chr5	80224524	80225524	+	897.0	f1_c57bl6.idr	Intergenic	L1Md_F|LINE|L1	-795547.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.0	0.0	0.0	0.0	2.0	5.0
Merged-chr11-115099685-3	chr11	115099190	115100190	+	897.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163753, intron 1 of 8)	intron (NM_001163753, intron 1 of 8)	8259.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36786799-1	chr17	36786299	36787299	+	897.0	f1_balb.idr	Intergenic	B3|SINE|B2	13889.0	NM_177637	224761.0	Mm.246584	NM_177637	ENSMUSG00000037246	H2-M10.5	6.9H	histocompatibility 2, M region locus 10.5	protein-coding	1.0	4.5	6.0	0.0	8.5	8.0
Merged-chr2-27723728-2	chr2	27723228	27724228	+	897.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	13145.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34232028-4	chr5	34231530	34232530	+	897.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 6 of 12)	intron (NM_001015039, intron 6 of 12)	-44320.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103858252-3	chr3	103857719	103858719	+	897.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1576.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	165.0	499.5	282.0	30.0	120.0	67.5
Merged-chr17-63876984-2	chr17	63876484	63877484	+	897.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 1 of 18)	intron (NM_001037997, intron 1 of 18)	-1082.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26637069-2	chr17	26636569	26637569	+	897.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 7 of 9)	intron (NM_026170, intron 7 of 9)	-39327.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105785284-3	chr1	105784799	105785799	+	897.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	4576.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38452863-3	chr15	38452374	38453374	+	897.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37673.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-47020739-2	chr7	47020239	47021239	+	897.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12325.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83660929-1	chr8	83660429	83661429	+	897.0	f1_c57bl6.idr	intron (NM_018771, intron 1 of 6)	intron (NM_018771, intron 1 of 6)	-5715.0	NM_013641	19216.0	Mm.213000	NM_013641	ENSMUSG00000019464	Ptger1	EP1|Ptgerep1	prostaglandin E receptor 1 (subtype EP1)	protein-coding	0.0	2.5	0.0	0.0	6.5	9.5
Merged-chr2-49619313-2	chr2	49618813	49619813	+	897.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008449)	promoter-TSS (NM_008449)	-1.0	NM_008449	16574.0	Mm.256342	NM_008449	ENSMUSG00000026764	Kif5c	KINN|Khc|NKHC|NKHC2	kinesin family member 5C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103065787-4	chr14	103065279	103066279	+	897.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4437.0	NM_001033242	211286.0	Mm.295289	NM_001033242	ENSMUSG00000022125	Cln5	A730075N08Rik	ceroid-lipofuscinosis, neuronal 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-48336261-2	chr2	48335761	48336761	+	897.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B2|LTR|ERVK	-477848.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145866164-4	chr6	145865689	145866689	+	897.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024469)	promoter-TSS (NM_024469)	-769.0	NM_001271768	79362.0	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128798909-2	chr4	128798409	128799409	+	897.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081098, intron 1 of 8)	intron (NM_001081098, intron 1 of 8)	7203.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152692878-3	chr1	152692383	152693383	+	897.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346117, intron 1 of 18)	URR1A|DNA|hAT-Charlie	-57668.0	NM_001081197	71281.0	Mm.158650	NM_001081197	ENSMUSG00000055547	Apobec4	4933431M11Rik	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64719670-2	chr17	64719170	64720170	+	897.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 16 of 21)	intron (NM_008549, intron 16 of 21)	-47441.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-142751604-2	chr6	142751104	142752104	+	897.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR41A2|LTR|ERV1	-5082.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-83817852-4	chr3	83817334	83818334	+	897.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23774.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80191580-4	chr7	80191010	80192010	+	897.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013659, intron 1 of 14)	intron (NM_013659, intron 1 of 14)	4669.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	2.5	7.0	5.0	3.5	7.5	3.5
Merged-chr5-124538972-4	chr5	124538492	124539492	+	897.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-1799.0	NM_019770	56334.0	Mm.325307	NM_019770	ENSMUSG00000029390	Tmed2	1110032D12Rik|1810020N21Rik|Rnp24|Sid394|p24beta1	transmembrane p24 trafficking protein 2	protein-coding	3.5	1.0	0.0	1.0	0.0	0.0
Merged-chr3-88687091-2	chr3	88686591	88687591	+	897.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151827, intron 2 of 13)	intron (NR_151827, intron 2 of 13)	1304.0	NR_151827	74200.0	Mm.251800	NM_028814	ENSMUSG00000028060	2810403A07Rik	A430106P18Rik|AI256352|AI451678|Blom7|Khdc4|Kiaa0907	RIKEN cDNA 2810403A07 gene	protein-coding	1.5	22.5	5.0	2.0	24.0	8.0
Merged-chr18-56927547-2	chr18	56927047	56928047	+	897.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1999.0	NM_177115	320253.0	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122478775-2	chr14	122478275	122479275	+	897.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009574, intron 2 of 2)	intron (NM_009574, intron 2 of 2)	3391.0	NM_009574	22772.0	Mm.308936	NM_009574	ENSMUSG00000061524	Zic2	HPE5|Ku	zinc finger protein of the cerebellum 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33248403-2	chr16	33247903	33248903	+	897.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-3053.0	NM_080557	69150.0	Mm.28196	NM_080557	ENSMUSG00000022808	Snx4	1810036H14Rik|AI037066	sorting nexin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117800006-2	chr11	117799506	117800506	+	897.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029964, intron 2 of 5)	B2_Mm2|SINE|B2	2346.0	NM_029964	77727.0	Mm.159981	NM_029964	ENSMUSG00000025573	6030468B19Rik	Il-40	RIKEN cDNA 6030468B19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91460360-2	chr1	91459860	91460860	+	897.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1032.0	NM_011066	18627.0	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	0.0	1.0	3.0	0.0	6.5	0.0
Merged-chr19-7495522-4	chr19	7495021	7496021	+	897.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146091, intron 1 of 12)	intron (NM_146091, intron 1 of 12)	1083.0	NM_146091	109168.0	Mm.264016	NM_146091	ENSMUSG00000024759	Atl3	4633402C03Rik|5730596K20Rik|AI465397|AW228836	atlastin GTPase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91930404-5	chr2	91929958	91930958	+	897.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007699)	TTS (NM_007699)	1244.0	NM_001291481	17242.0	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	3.0	0.0	5.0	0.0	1.0	2.0
Merged-chr1-191179409-2	chr1	191178909	191179909	+	897.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007498, intron 1 of 3)	intron (NM_007498, intron 1 of 3)	3924.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114688919-2	chr5	114688419	114689419	+	897.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019821, intron 1 of 4)	intron (NM_019821, intron 1 of 4)	2016.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	12.5	0.0	7.5	0.5	0.0	3.0
Merged-chr10-42210847-2	chr10	42210347	42211347	+	897.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	ORR1C2|LTR|ERVL-MaLR	65895.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-111182477-2	chr7	111181977	111182977	+	897.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59802.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53628099-3	chr11	53627605	53628605	+	897.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6597.0	NM_008355	16163.0	Mm.1284	NM_008355	ENSMUSG00000020383	Il13	Il-13	interleukin 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46319260-2	chr19	46318760	46319760	+	897.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028627, intron 11 of 17)	intron (NM_028627, intron 11 of 17)	7606.0	NM_001347454	73728.0	Mm.268532	NM_028627	ENSMUSG00000037126	Psd	1110007H17Rik|A930015K15|Efa6|Efa6a|Psdl|mKIAA2011	pleckstrin and Sec7 domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78879873-2	chr15	78879373	78880373	+	897.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145929, intron 1 of 16)	intron (NM_145929, intron 1 of 16)	2683.0	NM_145929	106039.0	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	20.5	40.0	40.0	16.0	56.0	46.5
Merged-chr1-88495441-3	chr1	88494958	88495958	+	897.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	14608.0	NM_008132	14659.0	Mm.5187	NM_008132	ENSMUSG00000062310	Glrp1	GRP-1	glutamine repeat protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64810034-2	chr9	64809534	64810534	+	897.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162917)	promoter-TSS (NM_001162917)	-977.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38404095-3	chr15	38403613	38404613	+	897.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86434.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-18115560-1	chr18	18115060	18116060	+	897.0	f0_balb.idr	Intergenic	Intergenic	-534570.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105983933-2	chr1	105983433	105984433	+	897.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151625, intron 2 of 2)	RLTR20A3_MM|LTR|ERVK	6349.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-44792372-2	chr17	44791872	44792872	+	897.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178652, intron 2 of 11)	intron (NM_178652, intron 2 of 11)	15206.0	NM_178652	109115.0	Mm.431327	NM_178652	ENSMUSG00000038954	Supt3	2310066G22Rik|AI315192|SPT3|SPT3L|Supt3h	suppressor of Ty 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-35293739-2	chr15	35293239	35294239	+	897.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2373.0	NM_054049	107587.0	Mm.46336	NM_054049	ENSMUSG00000022330	Osr2	5430409I15Rik|Osr2A|Osr2B	odd-skipped related 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64945841-4	chr17	64945326	64946326	+	897.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109755.0	NM_030031	78057.0	Mm.109380	NM_030031	ENSMUSG00000024088	4930583I09Rik	-	RIKEN cDNA 4930583I09 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94514040-2	chr10	94513540	94514540	+	897.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172051)	promoter-TSS (NM_172051)	-817.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-149937989-4	chr1	149937519	149938519	+	897.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	MTD|LTR|ERVL-MaLR	-15580.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91872806-2	chr16	91872306	91873306	+	897.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 28 of 38)	MER20|DNA|hAT-Charlie	58824.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88248344-3	chr15	88247835	88248835	+	897.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66539.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	3.0	0.0	2.0	2.0	3.0	3.5
Merged-chr9-106226390-4	chr9	106225886	106226886	+	896.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_031178, exon 2 of 2)	exon (NM_031178, exon 2 of 2)	3788.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	6.0	19.0	18.5	10.0	17.0	19.5
Merged-chr10-122953683-4	chr10	122953189	122954189	+	896.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	32035.0	NR_029527	387251.0		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	57.0	97.0	85.5	7.0	10.5	11.0
Merged-chr1-64127016-4	chr1	64126527	64127527	+	896.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5638.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-42124385-4	chr9	42123915	42124915	+	896.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011436)	promoter-TSS (NM_011436)	-118.0	NM_011436	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0.0	0.0	0.0	1.0	9.0	1.5
Merged-chr18-80714998-4	chr18	80714515	80715515	+	896.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1944.0	NM_001164110	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-8985612-4	chr14	8985099	8986099	+	896.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	319209.0	NR_045968	74859.0	Mm.84041	NR_045968	ENSMUSG00000097898	4930455B14Rik	1700027C12Rik	RIKEN cDNA 4930455B14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64408322-4	chr13	64407858	64408858	+	896.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24195.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	16.5	19.5	15.5	1.5	1.0	4.5
Merged-chr6-125366935-2	chr6	125366435	125367435	+	896.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_198604, intron 14 of 16)	intron (NM_198604, intron 14 of 16)	13569.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	35.5	150.0	79.5	34.5	117.5	75.5
Merged-chr4-40777334-7	chr4	40776842	40777842	+	896.904785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19457.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115694198-4	chr11	115693708	115694708	+	896.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	5326.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-18795084-4	chr13	18794596	18795596	+	896.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 7 of 28)	intron (NM_172120, intron 7 of 28)	77804.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80186171-2	chr7	80185671	80186671	+	896.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013659)	promoter-TSS (NM_013659)	-670.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121531743-2	chr10	121531254	121532254	+	896.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55040.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	2.0	0.0	1.0	7.0	4.0	3.5
Merged-chr11-120342025-2	chr11	120341541	120342541	+	896.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	5372.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-39836372-2	chr13	39835872	39836872	+	896.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	451639.0	NM_172143	218165.0	Mm.364096	NM_172143	ENSMUSG00000047094	Ofcc1	opo	orofacial cleft 1 candidate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99891871-3	chr7	99891385	99892385	+	896.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164258, intron 8 of 18)	intron (NM_001164258, intron 8 of 18)	32667.0	NM_001164258	446101.0	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136118646-4	chr4	136118140	136119140	+	896.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25182.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	4.0	22.5	12.5	10.5	27.0	7.5
Merged-chr1-151595747-2	chr1	151595247	151596247	+	896.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	MLT1A1|LTR|ERVL-MaLR	24374.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135680907-4	chr1	135680401	135681401	+	896.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39162.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96725928-3	chr9	96725419	96726419	+	896.81665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175537, intron 1 of 2)	intron (NM_175537, intron 1 of 2)	5756.0	NM_175537	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121385297-4	chr9	121384794	121385794	+	896.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357970, intron 1 of 15)	intron (NM_001357970, intron 1 of 15)	2500.0	NM_001357969	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-60320389-4	chr3	60319882	60320882	+	896.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-152448.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-51382755-4	chr17	51382255	51383255	+	896.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037268, intron 3 of 4)	intron (NR_037268, intron 3 of 4)	65514.0	NR_046166	328837.0	Mm.236143	NR_046166		C330011F03Rik	C330011F03	RIKEN cDNA C330011F03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-121135856-4	chr1	121135340	121136340	+	896.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	48435.0	NR_110450	98452.0	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr8-94995679-3	chr8	94995186	94996186	+	896.7666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018882, intron 1 of 13)	intron (NM_018882, intron 1 of 13)	11287.0	NM_018882	14766.0	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43959342-4	chr19	43958827	43959827	+	896.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030703, intron 8 of 8)	intron (NM_030703, intron 8 of 8)	-19129.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	1.5	4.0	0.0	2.0	3.0	1.5
Merged-chr1-182255227-4	chr1	182254720	182255720	+	896.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26975.0	NM_001360783	13244.0	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106786399-2	chr11	106785899	106786899	+	896.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355676, intron 4 of 13)	intron (NM_001355676, intron 4 of 13)	2095.0	NM_007840	13207.0	Mm.491096	NM_007840	ENSMUSG00000020719	Ddx5	2600009A06Rik|G17P1|HUMP68|Hlr1|p68	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93470392-4	chr2	93469884	93470884	+	896.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040532)	TTS (NR_040532)	-7434.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0.0	0.0	2.5	10.5	2.5	0.5
Merged-chr4-151051351-4	chr4	151050841	151051841	+	896.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009498, intron 2 of 4)	L1MB5|LINE|L1	6612.0	NM_009498	22319.0	Mm.273930	NM_009498	ENSMUSG00000028955	Vamp3	D130027G05Rik|VAMP-3|ceb	vesicle-associated membrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25041889-2	chr9	25041389	25042389	+	896.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67681.0	NR_153861	102631612.0	Mm.410759	NR_153861		E130101E03Rik	-	RIKEN cDNA E130101E03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120949016-4	chr11	120948518	120949518	+	896.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001038654)	promoter-TSS (NM_001038654)	-49.0	NM_001038653	80879.0	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-24981602-4	chr19	24981143	24982143	+	896.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17886.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122381130-4	chr2	122380615	122381615	+	896.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12197.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155275622-2	chr2	155275127	155276127	+	896.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025735)	promoter-TSS (NM_025735)	-737.0	NM_025735	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	16.5	8.5	12.0	14.5	18.5	9.5
Merged-chr2-58111246-4	chr2	58110749	58111749	+	896.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	48873.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41831089-2	chr10	41830589	41831589	+	896.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162908, intron 1 of 9)	intron (NM_001162908, intron 1 of 9)	20515.0	NM_001162908	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97169601-4	chr15	97169161	97170161	+	896.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2417.0	NR_155279	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21747961-4	chr14	21747450	21748450	+	896.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007268, intron 1 of 7)	intron (NM_001007268, intron 1 of 7)	672.0	NM_001007268	27389.0	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-28793126-3	chr2	28792640	28793640	+	896.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033874, intron 11 of 12)	RLTR34C_MM|LTR|ERVK	47220.0	NM_172977	269252.0	Mm.26043	NM_172977	ENSMUSG00000035666	Gtf3c4	5330400C03|AI426938|AU014771|AU017413|KAT12|TFIIIC90	general transcription factor IIIC, polypeptide 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-92081224-7	chr3	92080629	92081629	+	896.719055	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008508, exon 2 of 2)	exon (NM_008508, exon 2 of 2)	2013.0	NM_008508	16939.0	Mm.1121	NM_008508	ENSMUSG00000043165	Lor	AI036317|S77319	loricrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102052369-4	chr5	102051858	102052858	+	896.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	17563.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-53087600-3	chr5	53087088	53088088	+	896.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38235.0	NM_011402	20531.0	Mm.284891	NM_011402	ENSMUSG00000029188	Slc34a2	AA536683|D5Ertd227e|NaPi-2b|Npt2b	solute carrier family 34 (sodium phosphate), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-77896148-3	chr14	77895679	77896679	+	896.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8060.0	NM_178825	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99269900-3	chr10	99269395	99270395	+	896.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6664.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-106644609-4	chr7	106644063	106645063	+	896.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277179)	promoter-TSS (NM_001277179)	82.0	NM_001277179	434223.0	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	27.0	84.5	45.5	10.5	13.0	6.5
Merged-chr16-27436710-3	chr16	27436258	27437258	+	896.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025615, intron 7 of 9)	intron (NM_001025615, intron 7 of 9)	47802.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34386617-3	chr19	34386089	34387089	+	896.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88546.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	18.5	10.0	4.5	13.5	0.0	4.0
Merged-chr5-139324280-3	chr5	139323784	139324784	+	896.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 1 of 10)	intron (NM_172723, intron 1 of 10)	1180.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-103434873-3	chr12	103434386	103435386	+	896.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194069, intron 1 of 3)	RMER10B|LTR|ERVL	697.0	NM_194069	52668.0	Mm.2121	NM_026790	ENSMUSG00000064215	Ifi27	1110013J02Rik|2900026P10Rik|D12Ertd647e|ISG12a|Ifi27l1	interferon, alpha-inducible protein 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117848744-3	chr10	117848247	117849247	+	896.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2773.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	4.0	7.5	4.5	4.0	6.5	4.5
Merged-chr6-97396291-3	chr6	97395772	97396772	+	896.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001346637, exon 5 of 23)	exon (NM_001346637, exon 5 of 23)	63014.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	19.0	94.0	75.5	19.0	96.0	74.0
Merged-chr3-126693570-3	chr3	126693068	126694068	+	896.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 3 of 18)	intron (NM_001025438, intron 3 of 18)	96617.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	80.5	141.0	140.5	66.5	145.0	112.0
Merged-chr2-5529020-3	chr2	5528513	5529513	+	896.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290375, intron 2 of 10)	intron (NM_001290375, intron 2 of 10)	147033.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr15-100424205-2	chr15	100423705	100424705	+	896.666626	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040351, exon 1 of 3)	non-coding (NR_040351, exon 1 of 3)	1012.0	NR_040351	432982.0	Mm.234608	NM_001034883	ENSMUSG00000087444	Gm5475	EG432982	predicted gene 5475	ncRNA	6.0	0.0	0.0	0.0	4.5	2.0
Merged-chr4-41463187-2	chr4	41462687	41463687	+	896.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_024241, intron 1 of 12)	MTB|LTR|ERVL-MaLR	1661.0	NM_024241	109242.0	Mm.370288	NM_024241	ENSMUSG00000028438	Kif24	4933425J19Rik|9430029L23Rik	kinesin family member 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21692519-4	chr5	21692024	21693024	+	896.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359965, intron 1 of 4)	intron (NM_001359965, intron 1 of 4)	8872.0	NM_001359964	242864.0	Mm.153292	NM_178728	ENSMUSG00000044968	Napepld	A530089G06|Mbldc1|NAPE-PLD	N-acyl phosphatidylethanolamine phospholipase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61556217-6	chr18	61555892	61556892	+	896.638916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357498, intron 1 of 10)	intron (NM_001357498, intron 1 of 10)	1119.0	NM_146087	93687.0	Mm.26908	NM_146087	ENSMUSG00000024576	Csnk1a1	2610208K14Rik|4632404G05Rik|5430427P18Rik|CK1a|Csnk1a	casein kinase 1, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-104545968-4	chr11	104545475	104546475	+	896.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145436, intron 1 of 18)	B3A|SINE|B2	4645.0	NM_001285990	217232.0	Mm.89845	NM_145436	ENSMUSG00000020687	Cdc27	AI452358|APC3|BC023187	cell division cycle 27	protein-coding	3.5	13.0	7.5	8.5	8.5	6.0
Merged-chr17-15808623-4	chr17	15808125	15809125	+	896.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178615, intron 2 of 2)	intron (NM_178615, intron 2 of 2)	17961.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0.5	0.0	0.5	9.5	5.0	3.5
Merged-chr14-76760645-4	chr14	76760124	76761124	+	896.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153763, intron 1 of 1)	intron (NR_153763, intron 1 of 1)	493.0	NR_153763	73883.0	Mm.489041	NR_153763		4930431P22Rik	-	RIKEN cDNA 4930431P22 gene	ncRNA	21.0	12.0	11.0	0.0	0.5	4.0
Merged-chr7-113594575-4	chr7	113594075	113595075	+	896.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29588.0	NR_126544	69295.0	Mm.396150	NR_126544	ENSMUSG00000084984	Far1os	1700006P19Rik	fatty acyl CoA reductase 1, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-101699412-4	chr2	101698822	101699822	+	896.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009424, exon 8 of 8)	3' UTR (NM_009424, exon 8 of 8)	20902.0	NM_001303273	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	0.0	3.5	2.0	0.0	0.0	0.0
Merged-chr16-25042150-4	chr16	25041660	25042660	+	896.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17479.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-4174956-3	chr10	4174445	4175445	+	896.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38175.0	NR_152620	102632515.0	Mm.416995	NR_152620	ENSMUSG00000111266	Gm30570	-	predicted gene, 30570	ncRNA	0.0	0.0	0.5	0.0	3.0	0.5
Merged-chr4-59244503-4	chr4	59244020	59245020	+	896.604126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15531.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	21.0	92.5	54.5	32.0	76.5	47.0
Merged-chr11-117968503-5	chr11	117968077	117969077	+	896.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007707, intron 1 of 1)	CpG	789.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-63309182-4	chr10	63308694	63309694	+	896.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359484, intron 17 of 22)	intron (NM_001359484, intron 17 of 22)	29841.0	NM_019812	93759.0	Mm.351459	NM_019812	ENSMUSG00000020063	Sirt1	AA673258|SIR2L1|Sir2|Sir2a|Sir2alpha	sirtuin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-84675870-3	chr4	84675387	84676387	+	896.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172870)	promoter-TSS (NM_172870)	-801.0	NM_172870	242509.0	Mm.190774	NM_172870	ENSMUSG00000028487	Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99202816-10	chr5	99202231	99203231	+	896.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50196.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.5	0.0	0.0	1.0
Merged-chr10-21995792-10	chr10	21995321	21996321	+	896.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001161850, exon 4 of 12)	exon (NM_001161850, exon 4 of 12)	1155.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	15.0	15.5	14.0	4.5	5.0	3.0
Merged-chr4-152158270-6	chr4	152157772	152158772	+	896.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008236)	promoter-TSS (NM_008236)	-595.0	NM_001301805	15206.0	Mm.57038	NM_008236	ENSMUSG00000028940	Hes2	HES-2	hes family bHLH transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64786105-4	chr9	64785648	64786648	+	896.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24863.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-105745038-4	chr7	105744524	105745524	+	896.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020024)	promoter-TSS (NM_020024)	-686.0	NM_020024	24075.0	Mm.274846	NM_020024	ENSMUSG00000043866	Taf10	30kDa|AU041226|TAFII30|Taf2h	TATA-box binding protein associated factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81319215-6	chr10	81318628	81319628	+	896.525024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008844, exon 18 of 18)	3' UTR (NM_008844, exon 18 of 18)	-1975.0	NM_027381	70312.0	Mm.87628	NM_027381	ENSMUSG00000034889	Cactin	2510012J08Rik	cactin, spliceosome C complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25298397-4	chr10	25297897	25298897	+	896.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 1 of 7)	Lx5c|LINE|L1	766.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	42.0	23.5	31.0	18.0	13.0	16.5
Merged-chr19-12782997-4	chr19	12782510	12783510	+	896.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053009, intron 2 of 10)	Lx6|LINE|L1	13113.0	NR_024093	664779.0	Mm.290924	NM_001039718	ENSMUSG00000024695	Gm44505	Zfp91-Cntf|Zfp91Cntf	predicted readthrough transcript (NMD candidate), 44505	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57245131-2	chr17	57244631	57245631	+	896.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030084, intron 3 of 16)	intron (NM_030084, intron 3 of 16)	2339.0	NM_001308074	78308.0	Mm.28468	NM_030084	ENSMUSG00000005823	Gpr108	1810015L19Rik|AA589464|C79132|Lustr2	G protein-coupled receptor 108	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-56063112-2	chr16	56062612	56063612	+	896.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360073, intron 1 of 24)	intron (NM_001360073, intron 1 of 24)	5582.0	NM_001360073	66315.0	Mm.255784	NM_025483	ENSMUSG00000052917	Senp7	2410152H17Rik|2810413I22Rik|2900036C23Rik|6030449K19Rik|AI790676	SUMO1/sentrin specific peptidase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33008292-2	chr16	33007792	33008792	+	896.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081255, intron 20 of 20)	ID_B1|SINE|B4	47894.0	NM_178378	69707.0	Mm.227918	NM_178378	ENSMUSG00000035578	Iqcg	2400003L07Rik|G1-374-12|esgd12d|repro1|stubby12d	IQ motif containing G	protein-coding	0.5	0.0	0.0	3.0	0.0	0.0
Merged-chr9-118918935-2	chr9	118918435	118919435	+	896.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7601.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0.0	1.5	3.0	0.0	1.5	3.0
Merged-chr4-16011475-2	chr4	16010975	16011975	+	896.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355616, intron 1 of 5)	intron (NM_001355616, intron 1 of 5)	2363.0	NM_001355615	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	0.0	3.0	0.0	0.0	0.0	0.0
Merged-chr5-122784674-2	chr5	122784174	122785174	+	896.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5264.0	NM_145358	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3946322-4	chr7	3945816	3946816	+	896.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30815.0	NR_028115	18726.0	Mm.440989	NM_011090	ENSMUSG00000030427	Lilra6	7M1|Pira3	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-10411231-4	chr10	10410705	10411705	+	896.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 12 of 36)	intron (NM_001127353, intron 12 of 36)	61109.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	3.0	15.0	4.5	9.0	0.0	5.0
Merged-chr17-35021303-4	chr17	35020819	35021819	+	896.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347347, intron 8 of 16)	intron (NM_001347347, intron 8 of 16)	4740.0	NM_001347347	27762.0	Mm.56895	NM_138582	ENSMUSG00000007030	Vwa7	C6orf27|D17H6S56E-3|G7c|NG37	von Willebrand factor A domain containing 7	protein-coding	0.0	1.0	0.5	7.0	4.0	3.5
Merged-chr15-34022961-2	chr15	34022461	34023461	+	896.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59758.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0.0	2.0	0.0	0.5	0.0	1.0
Merged-chr9-79810657-2	chr9	79810157	79811157	+	896.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	17016.0	NR_040734	74633.0	Mm.262175	NR_040734	ENSMUSG00000086918	4930429F24Rik	-	RIKEN cDNA 4930429F24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95993645-2	chr3	95993145	95994145	+	896.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023320, intron 2 of 5)	intron (NM_023320, intron 2 of 5)	2194.0	NM_023320	67220.0	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	8.0	0.5	26.5	4.5	6.5	7.0
Merged-chr6-84583200-2	chr6	84582700	84583700	+	896.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177713, intron 3 of 6)	intron (NM_001177713, intron 3 of 6)	10610.0	NM_175475	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-5739848-3	chr15	5739352	5740352	+	896.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	243534.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43895029-4	chr7	43894503	43895503	+	896.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	13831.0	NM_019928	56640.0	Mm.42080	NM_019928	ENSMUSG00000006948	Klk4	ESMP1|KLK-L1|PSTS|Prss17	kallikrein related-peptidase 4 (prostase, enamel matrix, prostate)	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr10-75932427-4	chr10	75931904	75932904	+	896.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175329)	promoter-TSS (NM_175329)	98.0	NM_001306184	17385.0	Mm.4561	NM_008606	ENSMUSG00000000901	Mmp11	MMP-11|SL-3|ST3|Stmy3	matrix metallopeptidase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45073749-2	chr7	45073249	45074249	+	896.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163684, intron 2 of 8)	intron (NM_001163684, intron 2 of 8)	11320.0	NM_025533	66394.0	Mm.272139	NM_025533	ENSMUSG00000003421	Nosip	2310061K06Rik|CGI-25	nitric oxide synthase interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55850037-2	chr16	55849537	55850537	+	896.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134457, intron 4 of 5)	intron (NM_001134457, intron 4 of 5)	-11396.0	NM_001159395	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98816903-2	chr7	98816403	98817403	+	896.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18209.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-66400201-4	chr8	66399695	66400695	+	896.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 5 of 7)	Lx8|LINE|L1	13894.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34863625-2	chr6	34863125	34864125	+	896.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_197986, intron 1 of 1)	intron (NM_197986, intron 1 of 1)	479.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40499706-2	chr12	40499206	40500206	+	896.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	53653.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-60982381-2	chr8	60981881	60982881	+	896.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173873, intron 1 of 12)	intron (NM_173873, intron 1 of 12)	930.0	NM_173873	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136152743-2	chr4	136152243	136153243	+	896.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8921.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138835550-4	chr1	138835043	138836043	+	896.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025565, intron 3 of 4)	intron (NM_001025565, intron 3 of 4)	6901.0	NM_001042577	16876.0	Mm.250732	NM_010714	ENSMUSG00000019230	Lhx9	3110009O07Rik|BB104635|LH2B	LIM homeobox protein 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45545147-4	chr19	45544651	45545651	+	896.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	15413.0	NM_001330506	56626.0	Mm.46509	NM_020032	ENSMUSG00000025218	Poll	1110003P06Rik|AV007317	polymerase (DNA directed), lambda	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-131909995-5	chr4	131909476	131910476	+	896.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102393, intron 3 of 4)	RLTR31D_MM|LTR|ERVK	10053.0	NR_102394	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116096583-4	chr11	116096062	116097062	+	896.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-9567.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49720016-4	chr11	49719528	49720528	+	896.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-7306.0	NM_212484	104625.0	Mm.247113	NM_212484	ENSMUSG00000020362	Cnot6	CCR4	CCR4-NOT transcription complex, subunit 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96666063-4	chr15	96665584	96666584	+	896.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23171.0	NM_001166458	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128428714-4	chr2	128428207	128429207	+	896.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	644.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	109.5	372.0	292.0	92.5	232.5	186.0
Merged-chr2-58497163-3	chr2	58496665	58497665	+	896.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355048, intron 3 of 10)	intron (NM_001355048, intron 3 of 10)	64245.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-14998785-3	chr9	14998287	14999287	+	896.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46691.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-43368742-3	chr8	43368206	43369206	+	896.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61697.0	NM_009556	22702.0	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	6.0	6.5	9.0	0.0	14.0	9.0
Merged-chr13-81107641-4	chr13	81107147	81108147	+	896.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	143573.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76380373-4	chr16	76379867	76380867	+	896.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-6540.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122089084-4	chr5	122088591	122089591	+	896.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11860.0	NM_010861	17906.0	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr11-120219136-4	chr11	120218634	120219634	+	896.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12483.0	NR_151480	102640779.0	Mm.394084	NM_175248		2900052L18Rik	-	RIKEN cDNA 2900052L18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8737475-4	chr15	8736974	8737974	+	896.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-26667.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27237862-4	chr14	27237368	27238368	+	896.4213869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027871)	promoter-TSS (NM_027871)	-142.0	NM_027871	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110843373-4	chr12	110842881	110843881	+	896.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152102, exon 2 of 2)	non-coding (NR_152102, exon 2 of 2)	2352.0	NR_152102	66709.0	Mm.390504	NR_152102		4921507G05Rik	-	RIKEN cDNA 4921507G05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39770772-3	chr10	39770279	39771279	+	896.4166869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011264, intron 1 of 31)	B2_Mm1a|SINE|B2	38619.0	NM_011264	19714.0	Mm.439723	NM_011264	ENSMUSG00000019841	Rev3l	Rev|Rev3|Sez4	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26009678-4	chr17	26009165	26010165	+	896.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162868, intron 5 of 13)	intron (NM_001162868, intron 5 of 13)	12195.0	NM_153140	215445.0	Mm.41191	NM_153140	ENSMUSG00000037098	Rab11fip3	Cart1|D030060O14Rik|Rab11-FIP3|mKIAA0665	RAB11 family interacting protein 3 (class II)	protein-coding	1.0	0.0	2.0	0.0	1.5	1.0
Merged-chr3-65891805-4	chr3	65891292	65892292	+	896.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66457.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	19.5	13.0	19.5	11.0	33.0	21.5
Merged-chr11-62604359-2	chr11	62603859	62604859	+	896.400024	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028541)	promoter-TSS (NR_028541)	-171.0	NR_028541	100217444.0		NR_028541		Snord65	MBII-135|snoRNA135	small nucleolar RNA, C/D box 65	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106306908-4	chr9	106306412	106307412	+	896.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 8 of 10)	intron (NM_027354, intron 8 of 10)	25851.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	2.5	6.5	10.5	0.0	4.0	4.0
Merged-chr1-183599448-4	chr1	183598933	183599933	+	896.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-149544.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	3.5	4.5	6.5	5.0	19.0	4.5
Merged-chr4-41529045-3	chr4	41528560	41529560	+	896.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027993, intron 1 of 5)	intron (NM_027993, intron 1 of 5)	11623.0	NR_045726	76992.0	Mm.440546	NR_045726	ENSMUSG00000036162	Fam219aos	1700066J24Rik	family with sequence similarity 219, member A, opposite strand	ncRNA	14.0	0.0	1.5	1.0	0.0	7.0
Merged-chr6-39508228-3	chr6	39507767	39508767	+	896.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172477, exon 3 of 19)	exon (NM_172477, exon 3 of 19)	49567.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-104300116-3	chr7	104299609	104300609	+	896.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023835, exon 8 of 8)	3' UTR (NM_023835, exon 8 of 8)	-12003.0	NM_001310602	667823.0	Mm.482375	NM_001310602	ENSMUSG00000060441	Trim5	EG667823|Gm8833	tripartite motif-containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116439711-3	chr6	116439217	116440217	+	896.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009662, intron 3 of 13)	intron (NM_009662, intron 3 of 13)	21461.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116581018-4	chr11	116580574	116581574	+	896.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_173755, exon 1 of 18)	exon (NM_173755, exon 1 of 18)	373.0	NM_173755	217342.0	Mm.243950	NM_173755	ENSMUSG00000020802	Ube2o	9630022H21|B230113M03Rik|E2-230K|mKIAA1734	ubiquitin-conjugating enzyme E2O	protein-coding	0.0	4.0	0.0	7.0	0.0	5.5
Merged-chr6-83436736-4	chr6	83436239	83437239	+	896.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347313, intron 3 of 11)	intron (NM_001347313, intron 3 of 11)	4939.0	NM_183138	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30464589-2	chr2	30464089	30465089	+	896.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9610.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142363277-3	chr7	142362771	142363771	+	896.3666380000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347541, intron 2 of 2)	intron (NM_001347541, intron 2 of 2)	8988.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.0	0.5	5.0	3.0	1.0	2.5
Merged-chr2-12350579-3	chr2	12350093	12351093	+	896.361145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149732, intron 14 of 15)	intron (NR_149732, intron 14 of 15)	-48649.0	NM_001001309	241226.0	Mm.329997	NM_001001309	ENSMUSG00000026768	Itga8	AI447669	integrin alpha 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60982188-4	chr18	60981707	60982707	+	896.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177407, intron 16 of 17)	intron (NM_177407, intron 16 of 17)	18653.0	NM_001286809	12322.0	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0.5	3.5	1.0	0.5	0.5	2.0
Merged-chr5-122649495-3	chr5	122649008	122650008	+	896.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284402)	promoter-TSS (NM_001284402)	-916.0	NM_001284402	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	0.0	0.0	0.5	0.5	0.0	0.0
Merged-chr9-123525357-4	chr9	123524863	123525863	+	896.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4390.0	NM_001357485	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85393689-3	chr12	85393185	85394185	+	896.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18968.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127410733-3	chr7	127410226	127411226	+	896.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3904.0	NM_001167832	233893.0	Mm.297097	NM_146203	ENSMUSG00000045757	Zfp764	8030466O12Rik	zinc finger protein 764	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-16670478-4	chr11	16669936	16670936	+	896.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81767.0	NM_207655	13649.0	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64308212-3	chr1	64307674	64308674	+	896.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-186785.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115528282-3	chr5	115527759	115528759	+	896.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	21583.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	6.0	6.0	2.5	0.0	1.0	2.0
Merged-chr4-155469172-3	chr4	155468719	155469719	+	896.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027161, intron 1 of 4)	intron (NM_027161, intron 1 of 4)	105.0	NM_027161	69671.0	Mm.45401	NM_027161	ENSMUSG00000023153	Tmem52	2310043I08Rik	transmembrane protein 52	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4906641-4	chr19	4906120	4907120	+	896.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033128)	promoter-TSS (NM_001033128)	7.0	NM_001033128	52028.0	Mm.23636	NM_001033128	ENSMUSG00000006464	Bbs1	AI451249|D19Ertd609e	Bardet-Biedl syndrome 1 (human)	protein-coding	12.5	7.5	3.5	8.0	5.0	3.5
Merged-chr2-71924244-3	chr2	71923734	71924734	+	896.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	49330.0	NM_001360002	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	39.0	54.5	45.0	2.0	8.5	6.0
Merged-chr16-31285346-3	chr16	31284851	31285851	+	896.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10074.0	NM_025800	66849.0	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|I-2|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-96948979-3	chr5	96948477	96949477	+	896.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27705.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	21.0	18.0	23.5	5.0	15.0	21.5
Merged-chr1-135793778-3	chr1	135793249	135794249	+	896.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5672.0	NM_021467	21952.0	Mm.44379	NM_021467	ENSMUSG00000026418	Tnni1	2700018B22Rik|AI747285|ssTnI	troponin I, skeletal, slow 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119084125-3	chr11	119083614	119084614	+	896.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007625, intron 3 of 4)	intron (NM_007625, intron 3 of 4)	2123.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114969892-3	chr6	114969395	114970395	+	896.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356371)	promoter-TSS (NM_001356371)	-692.0	NM_001356371	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95905455-4	chr4	95904945	95905945	+	896.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113412, intron 14 of 15)	intron (NM_001113412, intron 14 of 15)	61590.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	0.0	1.5	0.0	0.0	2.5	0.0
Merged-chr9-3023609-4	chr9	3023186	3024186	+	896.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	15057.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-42902332-4	chr4	42901838	42902838	+	896.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14268.0	NM_001355693	230085.0	Mm.240965	NM_172690	ENSMUSG00000036062	Phf24	GINIP|N28178	PHD finger protein 24	protein-coding	5.0	1.0	4.0	0.0	0.0	5.5
Merged-chr3-61309389-4	chr3	61308886	61309886	+	896.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55121.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40815361-4	chr4	40814879	40815879	+	896.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022305, intron 2 of 5)	intron (NM_022305, intron 2 of 5)	34759.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134947604-4	chr6	134947119	134948119	+	896.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037956, intron 1 of 1)	intron (NR_037956, intron 1 of 1)	18527.0	NR_037955	381822.0	Mm.5935	NR_037955	ENSMUSG00000098318	Lockd	1190002F15Rik|AI120476|Droc	lncRNA downstream of Cdkn1b	ncRNA	0.0	2.0	2.5	1.0	0.0	5.5
Merged-chr16-91366801-4	chr16	91366316	91367316	+	896.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5967.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19342809-4	chr7	19342317	19343317	+	896.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2254.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0.0	1.5	7.5	5.5	7.5	1.5
Merged-chr9-96517654-4	chr9	96517162	96518162	+	896.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38987.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58818777-6	chr15	58818316	58819316	+	896.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175212, intron 1 of 6)	intron (NM_175212, intron 1 of 6)	4611.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122405263-4	chr8	122404755	122405755	+	896.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029993, intron 9 of 18)	intron (NM_001029993, intron 9 of 18)	-16765.0	NM_145834	234836.0	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34193346-4	chr19	34192800	34193800	+	896.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001360717, exon 1 of 12)	5' UTR (NM_001360717, exon 1 of 12)	366.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35815595-2	chr17	35815095	35816095	+	896.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-6118.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124500185-2	chr5	124499718	124500718	+	896.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_021430, intron 6 of 6)	intron (NM_021430, intron 6 of 6)	17063.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-151000954-4	chr2	151000456	151001456	+	896.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207204, intron 1 of 23)	B3|SINE|B2	8442.0	NM_207204	78177.0	Mm.120911	NM_207204	ENSMUSG00000068115	Ninl	4930519N13Rik|Gm1004|Gm1634|mKIAA0980	ninein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-12979759-4	chr7	12979285	12980285	+	896.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175558, intron 3 of 5)	intron (NM_175558, intron 3 of 5)	1937.0	NM_001168561	269870.0	Mm.62083	NM_175558	ENSMUSG00000033961	Zfp446	A630035I11Rik|A930031C22|AA120513|AV306632	zinc finger protein 446	protein-coding	23.0	41.0	39.0	4.5	37.5	12.0
Merged-chr2-5697437-4	chr2	5696943	5697943	+	896.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	17319.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0.0	0.0	2.0	3.0	0.0	2.5
Merged-chr5-124021328-4	chr5	124020829	124021829	+	896.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	10931.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	2.5	3.0	2.0	0.0	0.5	0.0
Merged-chr16-11411300-2	chr16	11410796	11411796	+	896.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290148, intron 1 of 13)	intron (NM_001290148, intron 1 of 13)	5648.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3898067-2	chr12	3897567	3898567	+	896.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 7 of 17)	B4A|SINE|B4	6323.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155476516-3	chr1	155476045	155477045	+	896.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50566.0	NR_132128	433367.0	Mm.359304	NR_132128	ENSMUSG00000073535	Gm5532	EG433367	predicted gene 5532	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71311925-3	chr17	71311397	71312397	+	896.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357336)	promoter-TSS (NM_001357336)	-341.0	NM_001357336	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	6.0	6.0	4.5	13.5	29.0	13.5
Merged-chr1-64318126-3	chr1	64317623	64318623	+	896.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-196734.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4335808-2	chr18	4335308	4336308	+	896.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 5 of 7)	intron (NM_007746, intron 5 of 7)	17145.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14494358-4	chr2	14493825	14494825	+	896.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012305, intron 12 of 12)	intron (NM_001012305, intron 12 of 12)	105927.0	NM_001012305	277468.0	Mm.44662	NM_001012305	ENSMUSG00000036949	Slc39a12	AW046938|Gm731	solute carrier family 39 (zinc transporter), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36022506-2	chr17	36022006	36023006	+	896.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_015618, intron 1 of 1)	RLTR13C2|LTR|ERVK	-1946.0	NM_008207	15042.0	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120883918-7	chr7	120883414	120884414	+	896.238098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267710, intron 6 of 17)	B1_Mus2|SINE|Alu	32725.0	NM_001267711	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146192168-3	chr6	146191700	146192700	+	896.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 46 of 56)	intron (NM_019923, intron 46 of 56)	258078.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-60432340-3	chr14	60431776	60432776	+	896.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	53990.0	NM_001164705	72125.0	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	6.5	10.5	12.0	5.0	5.5	11.0
Merged-chr15-9111089-4	chr15	9110552	9111552	+	896.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001285980)	TTS (NM_001285980)	29402.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70851975-4	chr9	70851463	70852463	+	896.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	82845.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11050354-6	chr19	11049714	11050714	+	896.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102366, intron 1 of 2)	intron (NR_102366, intron 1 of 2)	352.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4502824-4	chr7	4502241	4503241	+	896.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-1061.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165956490-4	chr2	165955990	165956990	+	896.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36147.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	23.5	65.5	58.0	25.0	49.5	46.5
Merged-chr12-5213885-4	chr12	5213395	5214395	+	896.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164493, intron 2 of 13)	intron (NM_001164493, intron 2 of 13)	161787.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32408042-4	chr18	32407552	32408552	+	896.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 2 of 17)	intron (NM_001360876, intron 2 of 17)	-29768.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40347919-3	chr10	40347470	40348470	+	896.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1338.0	NM_001291817	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61068590-3	chr18	61068088	61069088	+	896.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008809, intron 9 of 22)	intron (NM_008809, intron 9 of 22)	23438.0	NM_008809	18596.0	Mm.4146	NM_008809	ENSMUSG00000024620	Pdgfrb	AI528809|CD140b|PDGFR-1|Pdgfr	platelet derived growth factor receptor, beta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-58990577-3	chr6	58990085	58991085	+	896.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153574, intron 2 of 17)	intron (NM_153574, intron 2 of 17)	33917.0	NM_153574	58909.0	Mm.28813	NM_153574	ENSMUSG00000037709	Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107581216-4	chr9	107580716	107581716	+	896.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178020)	promoter-TSS (NM_178020)	-80.0	NM_178020	109685.0	Mm.447916	NM_178020	ENSMUSG00000036091	Hyal3	Hyl3	hyaluronoglucosaminidase 3	protein-coding	8.0	52.5	41.0	21.0	44.5	43.5
Merged-chr14-20885159-6	chr14	20884504	20885504	+	896.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-44394.0	NM_009502	22330.0	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr11-86062508-2	chr11	86062008	86063008	+	896.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_178309, intron 19 of 19)	intron (NM_178309, intron 19 of 19)	-38158.0	NR_046030	629393.0	Mm.372867	NR_046030		Gm20759	-	predicted gene, 20759	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121712973-4	chr5	121712495	121713495	+	896.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009125, intron 1 of 24)	CpG	1386.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-56277348-4	chr8	56276850	56277850	+	896.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17202.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109438147-4	chr4	109437656	109438656	+	896.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145948, intron 12 of 17)	intron (NM_001145948, intron 12 of 17)	22509.0	NM_001145948	230603.0	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-98298963-4	chr9	98298475	98299475	+	896.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357445, intron 1 of 3)	intron (NM_001357445, intron 1 of 3)	2405.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-14769227-6	chr9	14768710	14769710	+	896.14447	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029306, intron 1 of 3)	intron (NM_029306, intron 1 of 3)	1820.0	NM_029306	69325.0	Mm.440453	NM_029306	ENSMUSG00000031927	1700012B09Rik	1700007P19Rik	RIKEN cDNA 1700012B09 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130219642-4	chr5	130219141	130220141	+	896.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081394)	promoter-TSS (NM_001081394)	-103.0	NM_001081394	71667.0	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77858649-4	chr9	77858150	77859150	+	896.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-58715.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65598950-4	chr9	65598461	65599461	+	896.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11801.0	NM_001357527	208084.0	Mm.211032	NM_172453	ENSMUSG00000041064	Pif1	4631410M14|AI449441	PIF1 5'-to-3' DNA helicase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84554645-4	chr10	84554157	84555157	+	896.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1319.0	NR_040658	442847.0	Mm.128292	NR_040658	ENSMUSG00000097076	Platr7	C330046G13Rik	pluripotency associated transcript 7	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65549914-4	chr3	65549408	65550408	+	896.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178892, intron 4 of 5)	intron (NM_178892, intron 4 of 5)	-20494.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	17.0	2.5	26.0	8.5	1.0	21.0
Merged-chr5-105875596-3	chr5	105875106	105876106	+	896.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018759)	promoter-TSS (NM_018759)	-962.0	NR_030777	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-4736906-3	chr17	4736408	4737408	+	896.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	101928.0	NR_130984	75117.0	Mm.429393	NR_130984		4930517M08Rik	-	RIKEN cDNA 4930517M08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98878964-3	chr10	98878404	98879404	+	896.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35738.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141159597-7	chr4	141159079	141160079	+	896.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172518, intron 1 of 9)	intron (NM_172518, intron 1 of 9)	11657.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170158194-8	chr2	170157721	170158721	+	896.089294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15546.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130811127-2	chr4	130810627	130811627	+	896.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	18590.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-82787575-4	chr1	82787093	82788093	+	896.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19137.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90254368-2	chr9	90253868	90254868	+	896.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	B4|SINE|B4	16401.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44149119-3	chr10	44148623	44149623	+	896.0833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21324.0	NR_001582	70365.0	Mm.87073	NR_001582	ENSMUSG00000091358	Speer5-ps1	1700007C10Rik|SPEER-5|Speer5-ps	spermatogenesis associated glutamate (E)-rich protein 5, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-25242382-3	chr18	25241888	25242888	+	896.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033532, intron 5 of 10)	intron (NM_001033532, intron 5 of 10)	73368.0	NM_001033532	225289.0	Mm.391081	NM_001033532	ENSMUSG00000033632	AW554918	4921538P22|AI461742|Kiaa1328|mKIAA1328	expressed sequence AW554918	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-76949027-4	chr18	76948519	76949519	+	896.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361227, intron 1 of 6)	intron (NM_001361227, intron 1 of 6)	4635.0	NM_001361227	76987.0	Mm.236127	NM_029826	ENSMUSG00000025421	Hdhd2	0610039H12Rik|3110052N05Rik	haloacid dehalogenase-like hydrolase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23425663-4	chr13	23425157	23426157	+	896.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Tyr-TAC|tRNA|tRNA	-1791.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-114394921-4	chr9	114394426	114395426	+	896.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4214.0	NM_019922	56693.0	Mm.20904	NM_019922	ENSMUSG00000032431	Crtap	5730529N23Rik|CASP|Leprel3|P3h5	cartilage associated protein	protein-coding	14.5	25.0	23.0	17.0	17.0	23.5
Merged-chr2-130496384-3	chr2	130495925	130496925	+	896.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355161, intron 1 of 21)	intron (NM_001355161, intron 1 of 21)	46147.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	8.0	12.0	3.5	16.5	17.5	13.0
Merged-chr10-80618362-3	chr10	80617845	80618845	+	896.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4435.0	NM_134002	103236.0	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47354269-3	chr6	47353777	47354777	+	896.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99455.0	NM_001355551	26965.0	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	Cul-1	cullin 1	protein-coding	1.0	0.5	5.5	0.0	0.0	0.0
Merged-chr15-101975623-4	chr15	101975059	101976059	+	896.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21272.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16263554-10	chr7	16263068	16264068	+	896.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4028.0	NM_007577	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	15.0	33.5	28.0	11.5	27.5	31.5
Merged-chr9-78177056-4	chr9	78176593	78177593	+	896.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040401, exon 3 of 4)	non-coding (NR_040401, exon 3 of 4)	1179.0	NR_040401	320295.0	Mm.131285	NR_040401	ENSMUSG00000097574	C920006O11Rik	-	RIKEN cDNA C920006O11 gene	ncRNA	100.0	198.5	182.5	94.0	233.5	100.5
Merged-chr3-69756699-4	chr3	69756194	69757194	+	896.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34639.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39582095-3	chr18	39581594	39582594	+	896.0277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94849.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113494927-2	chr13	113494427	113495427	+	896.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 1 of 6)	intron (NR_045501, intron 1 of 6)	7917.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-13787656-3	chr18	13787163	13788163	+	896.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360804, intron 5 of 7)	intron (NM_001360804, intron 5 of 7)	185070.0	NM_001360804	225207.0	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding	5.5	0.0	0.0	0.0	0.0	6.5
Merged-chr1-55226552-2	chr1	55226052	55227052	+	896.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028713, exon 1 of 9)	5' UTR (NM_028713, exon 1 of 9)	230.0	NM_001356288	74013.0	Mm.292050	NM_028713	ENSMUSG00000025978	Rftn2	2700010E02Rik|3222401M22Rik	raftlin family member 2	protein-coding	0.0	4.0	1.0	0.0	9.0	1.0
Merged-chr17-33844181-1	chr17	33843681	33844681	+	896.0	f1_balb.idr	intron (NM_001305169, intron 1 of 4)	PB1D10|SINE|Alu	755.0	NM_001305169	54219.0	Mm.11175	NM_019421	ENSMUSG00000002308	Cd320	425O18-1|8D6|D17Ertd716e|NG29|TCblR|VLDL	CD320 antigen	protein-coding	0.0	9.0	3.0	2.5	2.0	3.0
Merged-chr13-35452622-3	chr13	35452118	35453118	+	896.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-207244.0	NM_009881	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	0.5	0.5	2.0	0.0	0.0	1.5
Merged-chr15-57925168-2	chr15	57924668	57925668	+	896.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356310, intron 3 of 19)	intron (NM_001356310, intron 3 of 19)	12969.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79340228-4	chr11	79339724	79340724	+	896.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010897, intron 1 of 57)	CpG	332.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4136148-4	chr19	4135721	4136721	+	896.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144532, exon 5 of 6)	exon (NM_144532, exon 5 of 6)	3388.0	NM_144532	73660.0	Mm.379226	NM_144532	ENSMUSG00000024842	Cabp4	2410038D05Rik	calcium binding protein 4	protein-coding	1.0	0.0	1.0	1.0	0.0	1.0
Merged-chr18-60696857-2	chr18	60696357	60697357	+	896.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348100, intron 10 of 14)	intron (NM_001348100, intron 10 of 14)	30709.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0.0	6.5	1.0	0.0	6.5	1.0
Merged-chr11-8691794-1	chr11	8691294	8692294	+	896.0	f1_balb.idr	Intergenic	Intergenic	-27259.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	1.5	1.5	0.0	2.0	0.0	1.5
Merged-chr10-118809581-2	chr10	118809081	118810081	+	896.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	59322.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106161277-2	chr11	106160777	106161777	+	896.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356458)	promoter-TSS (NM_001356458)	-548.0	NM_001356458	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	1.0	0.0	0.0	0.0	3.5	2.5
Merged-chr5-99231650-2	chr5	99231150	99232150	+	896.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 8 of 13)	intron (NM_181318, intron 8 of 13)	21277.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-56076037-3	chr8	56075546	56076546	+	896.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080438, intron 5 of 9)	intron (NM_080438, intron 5 of 9)	135221.0	NM_080438	110304.0	Mm.307061	NM_080438	ENSMUSG00000038257	Glra3	-	glycine receptor, alpha 3 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111676472-2	chr10	111675972	111676972	+	896.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82199.0	NR_045344	71321.0	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152569367-4	chr3	152568873	152569873	+	896.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355635, intron 6 of 8)	intron (NM_001355635, intron 6 of 8)	-97540.0	NR_040386	99542.0	Mm.394921	NR_040386	ENSMUSG00000097745	AI115009	-	expressed sequence AI115009	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47858064-1	chr19	47857564	47858564	+	896.0	f1_c57bl6.idr	exon (NM_010362, exon 3 of 6)	exon (NM_010362, exon 3 of 6)	3091.0	NM_010362	14873.0	Mm.378931	NM_010362	ENSMUSG00000025068	Gsto1	AA407097|AI194287|AU018802|Gsto-1|Gstx|Spg-r|p28	glutathione S-transferase omega 1	protein-coding	3.5	0.0	2.0	2.5	5.0	0.0
Merged-chr4-75264439-1	chr4	75263939	75264939	+	896.0	f0_balb.idr	Intergenic	Lx8|LINE|L1	13853.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117411563-2	chr10	117411063	117412063	+	896.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-34590.0	NM_001310609	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24817087-2	chr13	24816587	24817587	+	896.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025790)	TTS (NM_025790)	14402.0	NM_025790	66834.0	Mm.2125	NM_025790	ENSMUSG00000006717	Acot13	0610006O17Rik|Them2	acyl-CoA thioesterase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55776986-3	chr16	55776482	55777482	+	896.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	45156.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104999393-2	chr3	104998893	104999893	+	896.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-37684.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-106812760-2	chr13	106812260	106813260	+	896.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360897, intron 29 of 30)	intron (NM_001360897, intron 29 of 30)	124198.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	19.5	62.0	15.0	40.0	99.5	44.0
Merged-chr19-3932606-2	chr19	3932106	3933106	+	896.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2580.0	NM_019449	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-130691546-4	chr3	130691045	130692045	+	896.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G3|LTR|ERVL-MaLR	17899.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-10213442-1	chr3	10212942	10213942	+	896.0	f0_balb.idr	Intergenic	Intergenic	-4826.0	NM_024406	11770.0	Mm.582	NM_024406	ENSMUSG00000062515	Fabp4	422/aP2|AFABP|ALBP|ALBP/Ap2|Ap2|Lbpl|P15	fatty acid binding protein 4, adipocyte	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171611618-1	chr1	171611118	171612118	+	896.0	f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-4208.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113664512-3	chr6	113664002	113665002	+	896.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	26035.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83089130-3	chr8	83088561	83089561	+	896.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177378, exon 7 of 7)	3' UTR (NM_177378, exon 7 of 7)	-76291.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	2.0	7.5	0.0	0.0	1.5	0.0
Merged-chr6-97508210-2	chr6	97507710	97508710	+	896.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-20390.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	31.0	48.5	35.0	15.5	61.5	32.5
Merged-chr2-45059764-2	chr2	45059264	45060264	+	896.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-36587.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86689871-3	chr4	86689373	86690373	+	896.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19814.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	62.0	141.0	110.5	71.0	114.5	102.5
Merged-chr7-122205633-2	chr7	122205133	122206133	+	896.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-13863.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66185059-4	chr14	66184562	66185562	+	896.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 5 of 30)	intron (NM_001162366, intron 5 of 30)	28762.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	3.5	4.5	6.5	0.5	13.0	12.0
Merged-chr16-91730742-2	chr16	91730242	91731242	+	896.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	1371.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-80715706-3	chr1	80715188	80716188	+	896.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	42865.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-36897941-2	chr19	36897441	36898441	+	896.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	21658.0	NM_028263	72514.0	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-63240435-3	chr13	63239953	63240953	+	896.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	424.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	10.0	9.5	17.5	4.0	14.0	2.5
Merged-chr7-110718742-3	chr7	110718232	110719232	+	896.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49474.0	NM_001276301	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152125514-2	chr4	152125014	152126014	+	896.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207689, intron 7 of 9)	CpG	3411.0	NM_019585	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118591189-3	chr2	118590676	118591676	+	895.9722289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7035.0	NM_009773	12236.0	Mm.29133	NM_009773	ENSMUSG00000040084	Bub1b	AU045529|BUBR1	BUB1B, mitotic checkpoint serine/threonine kinase	protein-coding	0.0	2.5	0.0	0.0	0.0	0.5
Merged-chr19-16780457-4	chr19	16779970	16780970	+	895.962524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173028, intron 1 of 71)	CpG	463.0	NM_173028	271564.0	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-40647960-4	chr8	40647480	40648480	+	895.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-13188.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	2.0	50.0	14.0	0.0	6.0	9.0
Merged-chr9-123259873-4	chr9	123259430	123260430	+	895.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001002267, exon 1 of 1)	exon (NM_001002267, exon 1 of 1)	859.0	NM_001002267	72309.0	Mm.8569	NM_001002267	ENSMUSG00000054871	Tmem158	2310037P21Rik|Ris1	transmembrane protein 158	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr9-114870268-3	chr9	114869714	114870714	+	895.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-26062.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53259215-3	chr19	53258557	53259557	+	895.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3852.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67892388-4	chr5	67891874	67892874	+	895.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44943.0	NM_001038999	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125107516-4	chr5	125107000	125108000	+	895.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011424, intron 5 of 46)	intron (NM_011424, intron 5 of 46)	71714.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50482939-4	chr9	50482434	50483434	+	895.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11591.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166188229-4	chr2	166187742	166188742	+	895.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32559.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74934284-4	chr15	74933767	74934767	+	895.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20784.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	8.0	12.5	14.5	0.0	1.0	3.5
Merged-chr3-87214716-4	chr3	87214212	87215212	+	895.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-39965.0	NM_130867	170643.0	Mm.89552	NM_130867	ENSMUSG00000041734	Kirrel	6720469N11Rik|Kirrel1|Neph1	kirre like nephrin family adhesion molecule 1	protein-coding	51.5	70.0	64.0	35.0	35.5	25.5
Merged-chr11-69684493-4	chr11	69683990	69684990	+	895.895874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001034097, exon 10 of 13)	exon (NM_001034097, exon 10 of 13)	1064.0	NM_001159505	69583.0	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	8.5	35.0	11.5	4.0	31.0	23.0
Merged-chr9-105494086-3	chr9	105493579	105494579	+	895.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359822, intron 2 of 28)	intron (NM_001359822, intron 2 of 28)	1054.0	NM_175025	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	19.0	79.0	55.5	24.5	82.5	40.0
Merged-chr8-24559380-3	chr8	24558879	24559879	+	895.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145949, intron 1 of 9)	intron (NM_145949, intron 1 of 9)	16954.0	NM_145949	209176.0	Mm.219580	NM_145949	ENSMUSG00000031549	Ido2	AI265623|C230043N17Rik|Ido-2|Indol1	indoleamine 2,3-dioxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-69247518-4	chr10	69247027	69248027	+	895.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252638, intron 2 of 11)	intron (NM_001252638, intron 2 of 11)	34333.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-61351047-4	chr1	61350561	61351561	+	895.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27371.0	NR_040483	77341.0	Mm.402964	NR_040483	ENSMUSG00000085447	9530026F06Rik	-	RIKEN cDNA 9530026F06 gene	ncRNA	0.0	0.5	1.0	0.0	0.0	0.5
Merged-chr8-35655281-2	chr8	35654767	35655767	+	895.866699	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-66247.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	11.5	20.0	14.5	16.5	14.0	12.5
Merged-chr4-5645233-4	chr4	5644731	5645731	+	895.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173426, intron 1 of 2)	intron (NM_173426, intron 1 of 2)	1141.0	NM_173426	242297.0	Mm.331470	NM_173426	ENSMUSG00000049119	Fam110b	1700012H17Rik|5031405P22|AW049855	family with sequence similarity 110, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34346787-4	chr6	34346282	34347282	+	895.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7364.0	NM_008012	14187.0	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-82162869-2	chr12	82162369	82163369	+	895.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7147.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-72169425-3	chr4	72168975	72169975	+	895.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285530, intron 5 of 17)	intron (NM_001285530, intron 5 of 17)	31418.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40525170-2	chr10	40524670	40525670	+	895.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45192.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46369365-4	chr19	46368868	46369868	+	895.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029186, intron 6 of 8)	intron (NM_029186, intron 6 of 8)	12488.0	NM_029186	75146.0	Mm.159290	NM_029186	ENSMUSG00000025227	Mfsd13a	4930449A08Rik|4930538D17Rik|Tmem180	major facilitator superfamily domain containing 13a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-139263371-3	chr1	139262851	139263851	+	895.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133239, intron 5 of 11)	intron (NM_133239, intron 5 of 11)	113725.0	NM_133239	170788.0	Mm.95700	NM_133239	ENSMUSG00000063681	Crb1	7530426H14Rik|A930008G09Rik	crumbs family member 1, photoreceptor morphogenesis associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63608985-3	chr9	63608495	63609495	+	895.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	6349.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53084507-2	chr4	53084007	53085007	+	895.8333130000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_013454, exon 14 of 50)	exon (NM_013454, exon 14 of 50)	72627.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25805730-4	chr7	25805225	25806225	+	895.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028775, intron 7 of 8)	intron (NM_028775, intron 7 of 8)	10805.0	NM_028775	74134.0	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-96979547-2	chr5	96979047	96980047	+	895.8000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18142.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3962194-4	chr7	3961688	3962688	+	895.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46687.0	NR_028115	18726.0	Mm.440989	NM_011090	ENSMUSG00000030427	Lilra6	7M1|Pira3	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32988926-4	chr19	32988409	32989409	+	895.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-168203.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-14618974-4	chr13	14618463	14619463	+	895.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008944, intron 3 of 7)	B3|SINE|B2	5721.0	NM_008944	19166.0	Mm.252255	NM_008944	ENSMUSG00000015671	Psma2	Lmpc3	proteasome (prosome, macropain) subunit, alpha type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-46955225-4	chr14	46954732	46955732	+	895.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105813)	promoter-TSS (NR_105813)	-304.0	NR_105813	102465206.0		NR_105813	ENSMUSG00000099036	Mir378c	Gm27930|mmu-mir-378c	microRNA 378c	ncRNA	48.0	108.0	63.5	10.0	22.5	29.0
Merged-chr18-54294880-4	chr18	54294384	54295384	+	895.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR53_Mm|LTR|ERVK	-127411.0	NR_040338	77433.0	Mm.159919	NR_040338		Redrum	9430076G02Rik	Redrum, erythroid developmental long intergenic non-protein coding transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116670292-6	chr6	116669809	116670809	+	895.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178045, intron 1 of 10)	intron (NM_178045, intron 1 of 10)	3527.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-11717954-3	chr18	11717445	11718445	+	895.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081223, intron 8 of 18)	L2|LINE|L2	60596.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110244885-3	chr11	110244403	110245403	+	895.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166557, intron 5 of 6)	MLT1A1|LTR|ERVL-MaLR	6873.0	NM_147218	76184.0	Mm.159704	NM_147218	ENSMUSG00000044749	Abca6	6330565N06Rik	ATP-binding cassette, sub-family A (ABC1), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83182153-3	chr15	83181658	83182658	+	895.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9950.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13201075-4	chr10	13200604	13201604	+	895.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-7967.0	NM_181470	353258.0	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 ribosome biogenesis factor	protein-coding	13.5	10.0	11.5	20.0	16.5	18.0
Merged-chr12-44222060-5	chr12	44221585	44222585	+	895.755554	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045113, exon 1 of 1)	non-coding (NR_045113, exon 1 of 1)	729.0	NR_045113	100039062.0	Mm.490648	NR_045113		Gm2027	-	nuclear assembly factor 1 homolog pseudogene	pseudo	4.5	4.5	8.0	6.0	13.5	9.5
Merged-chr4-8380941-3	chr4	8380467	8381467	+	895.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-141926.0	NM_007592	12319.0	Mm.119320	NM_007592	ENSMUSG00000041261	Car8	AW546993|Ca8|Cals|Cals1|Carp|wdl	carbonic anhydrase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73327008-2	chr14	73326508	73327508	+	895.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1186.0	NM_009029	19645.0	Mm.273862	NM_009029	ENSMUSG00000022105	Rb1	Rb|Rb-1|pRb|pp105	RB transcriptional corepressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84886657-2	chr2	84886157	84887157	+	895.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199223)	promoter-TSS (NM_199223)	35.0	NM_199223	269295.0	Mm.86447	NM_199223	ENSMUSG00000050896	Rtn4rl2	Ngr2|Ngrh1|Ngrl3	reticulon 4 receptor-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107102988-4	chr11	107102404	107103404	+	895.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359590, intron 2 of 27)	intron (NM_001359590, intron 2 of 27)	29018.0	NM_176850	207165.0	Mm.343986	NM_176850	ENSMUSG00000040481	Bptf	9430093H17Rik|Falz	bromodomain PHD finger transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166774677-2	chr2	166774179	166775179	+	895.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19088.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117967435-2	chr11	117966935	117967935	+	895.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007707, exon 2 of 2)	3' UTR (NM_007707, exon 2 of 2)	1931.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81044606-4	chr15	81044049	81045049	+	895.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 3 of 13)	intron (NM_001082536, intron 3 of 13)	60498.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76535762-2	chr12	76535262	76536262	+	895.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	2202.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-88046746-2	chr11	88046257	88047257	+	895.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173374)	promoter-TSS (NM_173374)	-616.0	NM_001078167	110809.0	Mm.391719	NM_173374	ENSMUSG00000018379	Srsf1	1110054N12Rik|5730507C05Rik|6330415C05Rik|AI482334|AW491331|Asf|Sf2|Sfrs1	serine/arginine-rich splicing factor 1	protein-coding	11.5	44.5	37.5	31.5	48.0	36.0
Merged-chr8-11469180-2	chr8	11468680	11469680	+	895.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	Lx10|LINE|L1	-8749.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58948814-4	chr11	58948300	58949300	+	895.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030082)	promoter-TSS (NM_030082)	-111.0	NM_030082	78303.0	Mm.28022	NM_030082	ENSMUSG00000056895	Hist3h2ba	1500011O09Rik|AI413321	histone cluster 3, H2ba	protein-coding	1.0	14.0	2.5	0.0	0.0	3.0
Merged-chr12-100170493-4	chr12	100169992	100170992	+	895.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-10839.0	NM_183155	217827.0	Mm.224076	NM_183155	ENSMUSG00000021179	Nrde2	6720454P05Rik	nrde-2 necessary for RNA interference, domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79121684-4	chr11	79121184	79122184	+	895.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	MIRb|SINE|MIR	24789.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124432606-4	chr5	124432115	124433115	+	895.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6658.0	NM_001081203	243272.0	Mm.23879	NM_145631	ENSMUSG00000038095	Sbno1	9330180L10Rik|AI849128|AW557836|BC021875|Sbno|mSno1|sno	strawberry notch 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50394135-4	chr17	50393652	50394652	+	895.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100532.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	12.5	51.5	14.5	11.0	13.5	14.5
Merged-chr2-27565543-3	chr2	27565045	27566045	+	895.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50398.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102057226-3	chr5	102056729	102057729	+	895.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	12692.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53535656-3	chr19	53535133	53536133	+	895.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085390, intron 2 of 3)	intron (NM_001085390, intron 2 of 3)	6315.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0.0	0.0	3.0	0.0	8.0	1.5
Merged-chr1-170218673-4	chr1	170218181	170219181	+	895.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3274.0	NM_010633	16589.0	Mm.209150	NM_010633	ENSMUSG00000026667	Uhmk1	4732477C12Rik|4930500M09Rik|AA673513|AI449218|AU021979|C820018A03Rik|KIS|Kist|P-CIP2	U2AF homology motif (UHM) kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9886255-4	chr3	9885761	9886761	+	895.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52582.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	35.0	77.5	60.0	7.0	21.5	15.0
Merged-chr8-4323992-2	chr8	4323492	4324492	+	895.6999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_010485, intron 1 of 5)	MER20|DNA|hAT-Charlie	1108.0	NM_010485	15568.0	Mm.119162	NM_010485	ENSMUSG00000040028	Elavl1	2410055N02Rik|HUR|Hua|W91709	ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170706257-4	chr1	170705754	170706754	+	895.69165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081304, exon 16 of 16)	3' UTR (NM_001081304, exon 16 of 16)	61722.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11550306-4	chr4	11549814	11550814	+	895.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347055, exon 24 of 24)	3' UTR (NM_001347055, exon 24 of 24)	-8606.0	NM_001039556	623474.0	Mm.491200	NM_177285	ENSMUSG00000078773	Rad54b	E130016E03Rik	RAD54 homolog B (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97824133-4	chr15	97823638	97824638	+	895.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	7629.0	NM_019572	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-62441463-4	chr2	62440962	62441962	+	895.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29231.0	NM_001159543	13482.0	Mm.1151	NM_010074	ENSMUSG00000035000	Dpp4	Cd26|Dpp-4|THAM	dipeptidylpeptidase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31179443-3	chr5	31178933	31179933	+	895.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027901, intron 1 of 18)	intron (NM_027901, intron 1 of 18)	711.0	NM_027901	71752.0	Mm.271923	NM_027901	ENSMUSG00000106864	Gtf3c2	1300004C11Rik|2610510G03Rik|AI225816|AU041069|TFIIIC110|mKIAA0011	general transcription factor IIIC, polypeptide 2, beta	protein-coding	0.0	1.5	6.5	2.5	3.5	2.0
Merged-chr13-44734515-4	chr13	44733990	44734990	+	895.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205043, intron 1 of 17)	intron (NM_001205043, intron 1 of 17)	3219.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	9.0	10.5	14.0	7.0	26.0	8.0
Merged-chr15-58890696-3	chr15	58890200	58891200	+	895.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175151, intron 11 of 11)	intron (NM_175151, intron 11 of 11)	1471.0	NM_175226	75841.0	Mm.4537	NM_175226	ENSMUSG00000037075	Rnf139	4930555P18Rik	ring finger protein 139	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-28755658-3	chr2	28755150	28756150	+	895.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033874, intron 10 of 12)	intron (NM_001033874, intron 10 of 12)	22372.0	NR_037271	100526498.0		NR_037271	ENSMUSG00000092832	Mir3088	mir-3088|mmu-mir-3088	microRNA 3088	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-115048008-2	chr4	115047508	115048508	+	895.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8418.0	NM_011527	21349.0	Mm.239869	NM_011527	ENSMUSG00000028717	Tal1	Hpt|SCL/tal-1|Scl|bHLHa17|tal-1	T cell acute lymphocytic leukemia 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-103914553-2	chr5	103914053	103915053	+	895.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3294.0	NM_001359986	246293.0	Mm.179871	NM_178741	ENSMUSG00000029312	Klhl8	2310001P09Rik|D5Ertd431e	kelch-like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117541423-2	chr8	117540923	117541923	+	895.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 2 of 32)	Lx8|LINE|L1	43148.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32400654-2	chr16	32400154	32401154	+	895.666626	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001160402, exon 1 of 5)	5' UTR (NM_001160402, exon 1 of 5)	148.0	NM_001160402	277203.0	Mm.484240	NM_001160402	ENSMUSG00000079625	Tm4sf19	EG277203	transmembrane 4 L six family member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9467431-2	chr13	9466931	9467931	+	895.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	190906.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144704765-2	chr3	144704265	144705265	+	895.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 5 of 10)	L1Md_F2|LINE|L1	15570.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105172197-4	chr8	105171677	105172677	+	895.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161456, intron 2 of 4)	intron (NM_001161456, intron 2 of 4)	1503.0	NM_001161458	12400.0	Mm.2018	NM_022309	ENSMUSG00000031885	Cbfb	AI893578|PEA2|PEBP2b|Pebp2|Pebpb2	core binding factor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-93092400-6	chr5	93091860	93092860	+	895.638916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1056.0	NM_001009818	52398.0	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	0.0	0.0	1.5	0.0	0.0	2.0
Merged-chr7-79786353-4	chr7	79785806	79786806	+	895.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001037927)	TTS (NM_001037927)	7284.0	NM_008588	17292.0	Mm.1404	NM_008588	ENSMUSG00000030544	Mesp1	bHLHc5	mesoderm posterior 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122396999-2	chr5	122396499	122397499	+	895.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_019824, intron 2 of 6)	intron (NM_019824, intron 2 of 6)	5121.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24637980-4	chr16	24637466	24638466	+	895.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-83889.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129501146-3	chr6	129500634	129501634	+	895.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138648, intron 2 of 7)	intron (NM_138648, intron 2 of 7)	6031.0	NM_138648	108078.0	Mm.293626	NM_138648	ENSMUSG00000030162	Olr1	LOX-1|SR-EI|Scare1	oxidized low density lipoprotein (lectin-like) receptor 1	protein-coding	4.5	3.5	7.0	19.5	6.0	12.5
Merged-chr7-35741073-3	chr7	35740563	35741563	+	895.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178704, intron 3 of 18)	B3|SINE|B2	13391.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	7.0	13.5	6.5	16.5	41.0	27.0
Merged-chr9-45396092-3	chr9	45395588	45396588	+	895.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_022004)	TTS (NM_022004)	-3621.0	NR_028499	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0.0	0.0	4.0	4.0	4.5	4.5
Merged-chr17-24162875-4	chr17	24162407	24163407	+	895.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001361535)	TTS (NM_001361535)	826.0	NM_172935	245847.0	Mm.87319	NM_172935	ENSMUSG00000036820	Amdhd2	5730457F11Rik	amidohydrolase domain containing 2	protein-coding	28.0	69.5	31.5	29.0	76.0	47.0
Merged-chr1-171735117-4	chr1	171734609	171735609	+	895.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32023.0	NM_013730	27218.0	Mm.103648	NM_013730	ENSMUSG00000015316	Slamf1	4933415F16|AA177906|CD150|CDw150|ESTM51|IPO-3|Slam	signaling lymphocytic activation molecule family member 1	protein-coding	5.5	22.0	5.5	12.5	11.5	11.0
Merged-chr10-41896588-4	chr10	41896087	41897087	+	895.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013370, intron 4 of 9)	L1MC2|LINE|L1	9148.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64327156-4	chr7	64326659	64327659	+	895.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172742, intron 13 of 15)	intron (NM_172742, intron 13 of 15)	39489.0	NM_172742	233315.0	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	0.5	0.0	6.0	4.5	1.0	0.0
Merged-chr19-29239830-6	chr19	29239413	29240413	+	895.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11890.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3862365-3	chr12	3861871	3862871	+	895.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045884)	promoter-TSS (NR_045884)	-127.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23226072-3	chr16	23225647	23226647	+	895.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152126)	promoter-TSS (NR_152126)	126.0	NM_001252505	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108637874-6	chr12	108637337	108638337	+	895.544434	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	2084.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31422613-4	chr14	31422109	31423109	+	895.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	-4932.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-82375452-4	chr3	82374969	82375969	+	895.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356457, intron 6 of 13)	intron (NM_001356457, intron 6 of 13)	17282.0	NM_001356457	213582.0	Mm.271269	NM_001081230	ENSMUSG00000033900	Map9	5033421J10Rik|5330427D05Rik|ASAP|Mtap9	microtubule-associated protein 9	protein-coding	3.0	15.0	1.5	2.0	4.5	10.0
Merged-chr17-28012985-4	chr17	28012470	28013470	+	895.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 12 of 24)	intron (NM_181413, intron 12 of 24)	67614.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	7.0	8.0	2.0	2.5	1.0	4.0
Merged-chr10-78095319-4	chr10	78094815	78095815	+	895.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25947.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-47033346-2	chr11	47032846	47033846	+	895.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 6 of 7)	intron (NM_011891, intron 6 of 7)	222547.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	3.0	2.5	1.5	1.5	0.0	1.5
Merged-chr2-68859856-3	chr2	68859348	68860348	+	895.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1593.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-90570224-2	chr6	90569724	90570724	+	895.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356412, intron 10 of 22)	intron (NM_001356412, intron 10 of 22)	19431.0	NM_027406	107747.0	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35331568-3	chr17	35331087	35332087	+	895.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	-10746.0	NM_010392	15013.0	Mm.427969	NM_010392	ENSMUSG00000091705	H2-Q2	BE136769|Gm11132|H-2Q2|gs14-2	histocompatibility 2, Q region locus 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135514309-3	chr1	135513813	135514813	+	895.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173437, intron 3 of 28)	intron (NM_173437, intron 3 of 28)	-59630.0	NR_049188	100885827.0		NR_049188	ENSMUSG00000093515	Mir1231	Gm23720|mir-1231|mmu-mir-1231	microRNA 1231	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-108287639-2	chr10	108287139	108288139	+	895.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-44550.0	NM_054056	114774.0	Mm.391419	NM_054056	ENSMUSG00000035873	Pawr	2310001G03Rik|PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121286573-2	chr9	121286073	121287073	+	895.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-9401.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	3.0	21.0	0.0	0.0	2.0	3.0
Merged-chr5-21426459-2	chr5	21425959	21426959	+	895.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177869, intron 1 of 7)	intron (NM_177869, intron 1 of 7)	1556.0	NM_177869	330050.0	Mm.40655	NM_177869	ENSMUSG00000047221	Fam185a	4631428I10|AI847670	family with sequence similarity 185, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5817010-2	chr19	5816510	5817510	+	895.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14338.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53047128-2	chr4	53046628	53047628	+	895.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 37 of 49)	L3|LINE|CR1	35248.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25681318-2	chr15	25680818	25681818	+	895.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 2 of 40)	intron (NM_019472, intron 2 of 40)	58768.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34349597-4	chr17	34349103	34350103	+	895.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4958.0	NM_010381	100504404.0	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	2.5	26.0	3.0	10.0	39.5	23.5
Merged-chr9-7573755-2	chr9	7573255	7574255	+	895.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310717, intron 4 of 9)	intron (NM_001310717, intron 4 of 9)	2359.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134727580-2	chr4	134727080	134728080	+	895.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23290.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4707333-2	chr16	4706833	4707833	+	895.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023646, exon 12 of 12)	3' UTR (NM_023646, exon 12 of 12)	12023.0	NM_001290763	67824.0	Mm.28451	NM_026393	ENSMUSG00000063445	Nmral1	1110025F24Rik|AI256624	NmrA-like family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30090889-2	chr7	30090389	30091389	+	895.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152814)	promoter-TSS (NM_152814)	-379.0	NM_152814	72556.0	Mm.441512	NM_152814	ENSMUSG00000078768	Zfp566	2700043M03Rik|mszf4	zinc finger protein 566	protein-coding	15.0	39.5	48.5	33.0	74.0	31.5
Merged-chr2-166630052-2	chr2	166629552	166630552	+	895.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 5 of 39)	intron (NM_177782, intron 5 of 39)	65530.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61370107-2	chr9	61369607	61370607	+	895.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2259.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132476044-2	chr4	132475544	132476544	+	895.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-12123.0	NM_026039	67219.0	Mm.45929	NM_026039	ENSMUSG00000066042	Med18	2810046C01Rik	mediator complex subunit 18	protein-coding	6.0	3.0	6.0	6.0	3.0	6.0
Merged-chr4-99111917-4	chr4	99111425	99112425	+	895.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026082, intron 1 of 47)	MLT1K|LTR|ERVL-MaLR	8990.0	NM_001290636	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	2.5	0.0	1.5	8.5	0.5	0.5
Merged-chr4-133093662-2	chr4	133093164	133094164	+	895.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36969.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	5.5	20.5	33.0	5.5	15.0	13.0
Merged-chr10-77021644-2	chr10	77021144	77022144	+	895.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045882, exon 3 of 3)	non-coding (NR_045882, exon 3 of 3)	7931.0	NR_152191	100041099.0	Mm.426631	NR_152191		Gm3137	-	predicted gene, 3137	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96396643-4	chr9	96396173	96397173	+	895.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32242.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	9.5	32.0	42.5	23.5	25.5	21.0
Merged-chr10-83729725-2	chr10	83729225	83730225	+	895.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145198, intron 1 of 5)	intron (NM_001145198, intron 1 of 5)	6860.0	NM_001145198	69784.0	Mm.271188	NM_001145198	ENSMUSG00000087651	1500009L16Rik	2700050C19Rik|OCC-1	RIKEN cDNA 1500009L16 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128792250-2	chr2	128791750	128792750	+	895.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 16 of 18)	intron (NM_008587, intron 16 of 18)	-26053.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	1.0	3.5	3.5	11.0	2.0	4.0
Merged-chr18-67826197-4	chr18	67825700	67826700	+	895.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027556, intron 14 of 45)	intron (NM_027556, intron 14 of 45)	26093.0	NM_027556	70799.0	Mm.30857	NM_027556	ENSMUSG00000024542	Cep192	4631422C13Rik|D430014P18Rik	centrosomal protein 192	protein-coding	3.5	11.5	5.5	4.5	11.5	4.5
Merged-chr10-118596665-2	chr10	118596165	118597165	+	895.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40140.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62451491-2	chr10	62450991	62451991	+	895.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_027926)	TTS (NR_027926)	-1753.0	NM_181423	338359.0	Mm.235898	NM_181423	ENSMUSG00000020079	Supv3l1	6330443E10Rik	suppressor of var1, 3-like 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-21426705-1	chr12	21426205	21427205	+	895.5	f0_balb.idr	Intergenic	Intergenic	-9269.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	23.0	45.0	17.0	9.0	8.5	13.5
Merged-chr11-78194901-4	chr11	78194398	78195398	+	895.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045516, intron 1 of 3)	intron (NM_001045516, intron 1 of 3)	1506.0	NM_001045516	216974.0	Mm.50974	NM_001045516	ENSMUSG00000044122	Proca1	4933404M19Rik	protein interacting with cyclin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128312271-4	chr2	128311785	128312785	+	895.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028589, intron 2 of 2)	intron (NR_028589, intron 2 of 2)	117066.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81434132-4	chr10	81433607	81434607	+	895.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-6934.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-106194319-3	chr14	106193827	106194827	+	895.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	88129.0	NR_073203	212085.0	Mm.78128	NM_198601	ENSMUSG00000022113	Trim52	4921513B05Rik	tripartite motif-containing 52	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57182102-3	chr16	57181609	57182609	+	895.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358433, intron 14 of 18)	intron (NM_001358433, intron 14 of 18)	-14777.0	NM_023175	52633.0	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-109055628-3	chr9	109055078	109056078	+	895.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026381, intron 1 of 3)	intron (NM_026381, intron 1 of 3)	712.0	NM_026381	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152168550-4	chr1	152168021	152169021	+	895.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78201.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-83806246-4	chr9	83805714	83806714	+	895.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148941)	promoter-TSS (NM_148941)	91.0	NM_148941	83603.0	Mm.83949	NM_148941	ENSMUSG00000032262	Elovl4	-	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4	protein-coding	10.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34026905-4	chr11	34026403	34027403	+	895.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	MTB|LTR|ERVL-MaLR	-20025.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150672169-4	chr2	150671670	150672670	+	895.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3930.0	NM_080575	68738.0	Mm.7044	NM_080575	ENSMUSG00000027452	Acss1	1110032O15Rik|AI788978|Acas2|Acas2l|AceCS2	acyl-CoA synthetase short-chain family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3436676-2	chr12	3436176	3437176	+	895.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270988, intron 1 of 11)	L1VL4|LINE|L1	9819.0	NM_172421	75302.0	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2, transcriptional regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31234108-4	chr14	31233583	31234583	+	895.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16210.0	NM_001025379	218877.0	Mm.27812	NM_001025379	ENSMUSG00000021904	Sema3g	AK129018	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11118679-4	chr19	11118174	11119174	+	895.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027058, intron 1 of 6)	intron (NM_027058, intron 1 of 6)	12204.0	NM_027058	69369.0	Mm.391200	NM_027058	ENSMUSG00000024729	1700017D01Rik	-	RIKEN cDNA 1700017D01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104436242-4	chr8	104435743	104436743	+	895.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013380, intron 4 of 12)	intron (NM_001013380, intron 4 of 12)	6804.0	NM_001013380	234663.0	Mm.289583	NM_001013380	ENSMUSG00000035770	Dync1li2	AA409702|C920003I06|Dncli2|Dnclic2|LIC2	dynein, cytoplasmic 1 light intermediate chain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87184991-4	chr1	87184490	87185490	+	895.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027084, intron 4 of 12)	intron (NM_027084, intron 4 of 12)	1676.0	NM_027084	69453.0	Mm.84618	NM_027084	ENSMUSG00000036480	Prss56	1700027L20Rik	protease, serine 56	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7569866-2	chr19	7569366	7570366	+	895.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362425, intron 2 of 4)	intron (NM_001362425, intron 2 of 4)	12381.0	NM_001362425	225845.0	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	AdPLA|C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	0.0	0.0	2.0	0.0	0.0	2.0
Merged-chr9-107982189-2	chr9	107981689	107982689	+	895.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_023738, intron 21 of 23)	(TG)n|Simple_repeat|Simple_repeat	3727.0	NM_026597	68176.0	Mm.76166	NM_026597	ENSMUSG00000042106	Fam212a	6230427J02Rik|Inka1	family with sequence similarity 212, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-37079645-4	chr11	37079156	37080156	+	895.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-135415.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150002124-4	chr4	150001626	150002626	+	895.3583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173371, intron 1 of 4)	B3|SINE|B2	1110.0	NM_001291004	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	1.5	4.0	2.0	6.0	7.0	10.0
Merged-chr2-91182345-7	chr2	91181791	91182791	+	895.357117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177719, intron 1 of 34)	intron (NM_001177719, intron 1 of 34)	756.0	NM_001177719	228355.0	Mm.36410	NM_145527	ENSMUSG00000040687	Madd	9630059K23Rik|IG20	MAP-kinase activating death domain	protein-coding	0.5	11.5	13.5	4.5	13.0	16.5
Merged-chr18-32165993-2	chr18	32165493	32166493	+	895.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011946, intron 1 of 16)	intron (NM_011946, intron 1 of 16)	2904.0	NM_011946	26405.0	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-138118233-2	chr3	138117732	138118732	+	895.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355052, intron 8 of 21)	intron (NM_001355052, intron 8 of 21)	13421.0	NM_008642	17777.0	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding	30.0	109.5	82.0	49.0	219.0	135.5
Merged-chr6-113477389-2	chr6	113476889	113477889	+	895.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178942, intron 9 of 17)	intron (NM_178942, intron 9 of 17)	5934.0	NM_134159	171095.0	Mm.213397	NM_134159	ENSMUSG00000030281	Il17rc	1110025H02Rik|Gm19850|IL-17RC|IL17-RC|IL17-RL|Il17rl	interleukin 17 receptor C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-5481902-3	chr5	5481410	5482410	+	895.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2767.0	NM_001200025	381716.0	Mm.276086	NM_001200025	ENSMUSG00000079666	1700015F17Rik	Gm1686	RIKEN cDNA 1700015F17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140611866-3	chr5	140611368	140612368	+	895.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008494, exon 2 of 8)	exon (NM_008494, exon 2 of 8)	4527.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35869671-5	chr17	35869213	35870213	+	895.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146710, intron 2 of 3)	intron (NM_001146710, intron 2 of 3)	3098.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	2.5	17.5	8.5	1.5	8.5	6.0
Merged-chr15-100679242-3	chr15	100678759	100679759	+	895.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033612, intron 6 of 7)	intron (NM_033612, intron 6 of 7)	8661.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	23.5	52.5	34.0	11.0	72.5	39.5
Merged-chr18-47998148-3	chr18	47997641	47998641	+	895.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045404, intron 2 of 3)	intron (NR_045404, intron 2 of 3)	-47194.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-15126392-3	chr3	15125897	15126897	+	895.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	155196.0	NR_040550	77127.0	Mm.195792	NR_040549	ENSMUSG00000098008	A930001A20Rik	-	RIKEN cDNA A930001A20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63389482-3	chr4	63388983	63389983	+	895.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 4 of 21)	intron (NM_001045514, intron 4 of 21)	8757.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-85306732-3	chr6	85306232	85307232	+	895.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178639, intron 2 of 13)	MTD|LTR|ERVL-MaLR	26690.0	NM_178639	94282.0	Mm.121485	NM_178639	ENSMUSG00000033720	Sfxn5	C230001H08Rik	sideroflexin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117807684-6	chr10	117807179	117808179	+	895.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-14974.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	3.0	10.5	3.5	3.0	10.5	3.0
Merged-chr1-39906177-3	chr1	39905680	39906680	+	895.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 2 of 29)	intron (NM_001252202, intron 2 of 29)	5267.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34262529-4	chr19	34262101	34263101	+	895.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-7228.0	NM_007392	11475.0	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMAalpha|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	2.0	1.5	2.0	0.0	1.0	5.5
Merged-chr11-16629842-4	chr11	16629317	16630317	+	895.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-121333.0	NM_001109971	20335.0	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	3.5	7.5	7.0	3.0	2.5	5.0
Merged-chr9-44094913-4	chr9	44094408	44095408	+	895.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016808, exon 13 of 13)	3' UTR (NM_016808, exon 13 of 13)	-6862.0	NM_001190314	259172.0	Mm.227110	NM_147126	ENSMUSG00000034739	Mfrp	rd6	membrane frizzled-related protein	protein-coding	2.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57536410-3	chr6	57535987	57536987	+	895.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1061.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63417503-4	chr4	63416992	63417992	+	895.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008791, intron 10 of 12)	intron (NM_001008791, intron 10 of 12)	-14047.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75764723-2	chr11	75764205	75765205	+	895.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009536, exon 6 of 6)	3' UTR (NM_009536, exon 6 of 6)	-31104.0	NR_136933	102641247.0	Mm.411386	NR_136932		Gm12339	-	predicted gene 12339	ncRNA	4.0	2.0	4.0	12.5	10.5	4.0
Merged-chr3-59213764-3	chr3	59213238	59214238	+	895.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	-2856.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120280265-2	chr2	120279853	120280853	+	895.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024137, intron 6 of 19)	intron (NM_001024137, intron 6 of 19)	8716.0	NM_001024137	78390.0	Mm.330507	NM_001024137	ENSMUSG00000070719	Pla2g4d	2610311B01Rik|Pla2delta|cPLA2delta	phospholipase A2, group IVD	protein-coding	0.0	0.0	0.0	0.0	3.0	0.0
Merged-chr19-55743146-4	chr19	55742662	55743662	+	895.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001331147, exon 3 of 14)	exon (NM_001331147, exon 3 of 14)	1352.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34806449-4	chr8	34805952	34806952	+	895.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1158.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	5.5	19.5	10.0	0.5	14.5	7.5
Merged-chr18-26919097-2	chr18	26918597	26919597	+	895.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1164940.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-112405206-3	chr7	112404699	112405699	+	895.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027587, intron 7 of 9)	ORR1E|LTR|ERVL-MaLR	-22507.0	NM_020606	57342.0	Mm.143763	NM_020606	ENSMUSG00000030770	Parva	2010012A22Rik|5430400F08Rik|AI225929|AU042898|Actp|CH-ILKBP|Parvin	parvin, alpha	protein-coding	2.5	0.0	0.0	0.0	0.0	0.5
Merged-chr1-70858753-3	chr1	70858275	70859275	+	895.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177164, intron 3 of 3)	RMER15|LTR|ERVL	133060.0	NM_177164	320460.0	Mm.360649	NM_177164	ENSMUSG00000045648	Vwc2l	A830006F12Rik|Brl	von Willebrand factor C domain-containing protein 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-101802901-3	chr3	101802401	101803401	+	895.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33322.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102393316-2	chr12	102392816	102393816	+	895.2000119999999	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011175)	TTS (NM_011175)	46497.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	4.0	3.0	4.5	2.5	4.0	10.0
Merged-chr10-99128018-6	chr10	99127510	99128510	+	895.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 3 of 12)	intron (NR_153333, intron 3 of 12)	19875.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16057999-4	chr7	16057500	16058500	+	895.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13845.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	2.0	4.0	9.0	1.0	13.0	10.5
Merged-chr7-126652832-4	chr7	126652316	126653316	+	895.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029339, intron 1 of 9)	intron (NM_029339, intron 1 of 9)	3507.0	NM_029339	75565.0	Mm.45686	NM_029339	ENSMUSG00000030714	Sgf29	1700023O11Rik|9530025I05Rik|Ccdc101	SAGA complex associated factor 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-70378209-4	chr4	70377698	70378698	+	895.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145990, intron 4 of 36)	GSAT_MM|Satellite|Satellite	32237.0	NM_001313762	214444.0	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132261051-4	chr4	132260541	132261541	+	895.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122992, intron 1 of 10)	CpG	508.0	NM_020273	56809.0	Mm.103489	NM_020273	ENSMUSG00000028901	Gmeb1	1110050A04Rik|AI256615|AI481278	glucocorticoid modulatory element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21273718-4	chr19	21273215	21274215	+	895.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009551, intron 1 of 5)	intron (NM_009551, intron 1 of 5)	1437.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	131.0	234.0	204.5	131.5	237.0	200.0
Merged-chr3-137938688-3	chr3	137938157	137939157	+	895.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 6 of 8)	intron (NM_011932, intron 6 of 8)	20102.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	3.5	0.0	0.5	2.0	1.0	1.0
Merged-chr17-35997797-2	chr17	35997297	35998297	+	895.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NR_015618, intron 1 of 1)	B4A|SINE|B4	3293.0	NR_015618	77810.0	Mm.483143	NR_015618		A930015D03Rik	-	RIKEN cDNA A930015D03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34921730-3	chr19	34921227	34922227	+	895.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362434)	promoter-TSS (NM_001362434)	-631.0	NM_001362434	240641.0	Mm.278471	NM_183046	ENSMUSG00000024795	Kif20b	33cex|C330014J10Rik|MPP1|Mphosph1|magoo	kinesin family member 20B	protein-coding	9.5	40.0	25.5	20.0	31.0	24.0
Merged-chr18-39876020-4	chr18	39875543	39876543	+	895.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102546.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	1.0	2.0	7.5	2.0	9.0	1.5
Merged-chr2-57102706-2	chr2	57102206	57103206	+	895.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	12332.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-45980595-2	chr11	45980095	45981095	+	895.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_173384, exon 1 of 5)	exon (NM_173384, exon 1 of 5)	285.0	NM_173384	214105.0	Mm.66708	NM_173384	ENSMUSG00000040489	Sox30	-	SRY (sex determining region Y)-box 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-67879501-4	chr8	67878995	67879995	+	895.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177698, intron 8 of 14)	intron (NM_177698, intron 8 of 14)	31451.0	NM_030263	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133464642-2	chr4	133464143	133465143	+	895.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15490.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	15.0	5.0	5.0	33.0	68.5	55.0
Merged-chr13-41073450-2	chr13	41072950	41073950	+	895.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145802, intron 1 of 11)	intron (NM_001145802, intron 1 of 11)	-2985.0	NM_008547	17152.0	Mm.8149	NM_008547	ENSMUSG00000021363	Mak	A930010O05Rik	male germ cell-associated kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84190307-3	chr12	84189830	84190830	+	895.1333619999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	3685.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163716597-4	chr2	163716108	163717108	+	895.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 3 of 4)	intron (NM_001039390, intron 3 of 4)	22571.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88245000-2	chr1	88244500	88245500	+	895.125	f1_balb.idr|f1_c57bl6.idr	exon (NM_001281466, exon 23 of 42)	exon (NM_001281466, exon 23 of 42)	17980.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135617545-4	chr1	135617051	135618051	+	895.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19775.0	NR_151586	215714.0	Mm.472859	NM_175447		Gm4793	EG215714	predicted gene 4793	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60348129-4	chr10	60347632	60348632	+	895.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028732, intron 1 of 6)	intron (NM_028732, intron 1 of 6)	1281.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85349966-3	chr12	85349458	85350458	+	895.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 3 of 4)	intron (NM_026775, intron 3 of 4)	-10596.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55086578-3	chr1	55086107	55087107	+	895.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356512, intron 2 of 11)	intron (NM_001356512, intron 2 of 11)	1325.0	NM_010477	15510.0	Mm.1777	NM_010477	ENSMUSG00000025980	Hspd1	60kDa|CPN60|HSP-60|HSP-65|Hsp60	heat shock protein 1 (chaperonin)	protein-coding	6.0	22.0	18.0	6.0	22.0	18.0
Merged-chr18-61128003-5	chr18	61127633	61128633	+	895.093323	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001037859, exon 17 of 22)	exon (NM_001037859, exon 17 of 22)	10665.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	27.5	23.0	12.0	7.5	26.5	6.5
Merged-chr6-115284316-4	chr6	115283812	115284812	+	895.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32107.0	NM_001356406	110595.0	Mm.255607	NM_080639	ENSMUSG00000030317	Timp4	Timp-4	tissue inhibitor of metalloproteinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-51899388-3	chr15	51898931	51899931	+	895.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21990.0	NM_030132	78581.0	Mm.176347	NM_030132	ENSMUSG00000022313	Utp23	1700010I21Rik|AI662478|BB238373|D530033C11Rik	UTP23 small subunit processome component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173785096-4	chr2	173784598	173785598	+	895.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019806)	TTS (NM_019806)	47527.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	5.0	0.0	1.0	0.5	0.0	0.5
Merged-chr7-75822559-4	chr7	75822046	75823046	+	895.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-25792.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31446589-4	chr3	31446079	31447079	+	895.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-136260.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-63965562-4	chr15	63965070	63966070	+	895.020874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360038, intron 2 of 11)	intron (NM_001360038, intron 2 of 11)	32496.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-76853754-4	chr5	76853320	76854320	+	895.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163793, intron 4 of 8)	intron (NM_001163793, intron 4 of 8)	13221.0	NM_001163793	320827.0	Mm.101504	NM_001163793	ENSMUSG00000036377	C530008M17Rik	2810489J07Rik|4930529A19Rik|4931405B09Rik|Kiaa1211|mKIAA1211	RIKEN cDNA C530008M17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58578869-4	chr9	58578361	58579361	+	895.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3379.0	NM_001293673	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30717450-4	chr7	30716925	30717925	+	895.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018731, intron 10 of 21)	intron (NM_018731, intron 10 of 21)	5216.0	NM_001290627	11944.0	Mm.12821	NM_018731	ENSMUSG00000005553	Atp4a	-	ATPase, H+/K+ exchanging, gastric, alpha polypeptide	protein-coding	0.0	0.0	0.5	0.0	3.5	0.0
Merged-chr8-11453935-2	chr8	11453435	11454435	+	895.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011227)	TTS (NM_011227)	-23994.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87741915-1	chr17	87741415	87742415	+	895.0	f1_c57bl6.idr	Intergenic	Intergenic	56079.0	NM_199251	210741.0	Mm.312046	NM_199251	ENSMUSG00000050138	Kcnk12	mntk1	potassium channel, subfamily K, member 12	protein-coding	5.5	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32486541-4	chr19	32486065	32487065	+	895.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010799, intron 1 of 4)	CpG	796.0	NM_010799	17330.0	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25253461-3	chr9	25252960	25253960	+	895.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359738, intron 1 of 12)	intron (NM_001359738, intron 1 of 12)	568.0	NM_001359738	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81360870-2	chr10	81360370	81361370	+	895.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028657, intron 2 of 9)	intron (NM_028657, intron 2 of 9)	3379.0	NM_028657	73822.0	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1|gr	major facilitator superfamily domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-80760554-2	chr1	80760054	80761054	+	895.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2001.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-90244118-4	chr15	90243626	90244626	+	895.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19766.0	NR_106106	102466838.0		NR_106106	ENSMUSG00000099319	Mir7648	Gm27736|mmu-mir-7648	microRNA 7648	ncRNA	3.5	3.5	11.0	3.5	1.0	5.5
Merged-chr12-113220749-4	chr12	113220243	113221243	+	895.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34840.0	NM_153776	69195.0	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	12.5	0.0	1.5	7.5	4.0	2.5
Merged-chr6-125363236-1	chr6	125362736	125363736	+	895.0	f1_balb.idr	TTS (NM_011609)	TTS (NM_011609)	13513.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	3.0	8.0	2.0	2.5	2.5	4.0
Merged-chr16-20674313-3	chr16	20673873	20674873	+	895.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304432, intron 3 of 31)	intron (NM_001304432, intron 3 of 31)	1646.0	NM_001304432	208643.0	Mm.260256	NM_145941	ENSMUSG00000045983	Eif4g1	E030015G23Rik|eIF-4-gamma 1|eIF-4G 1|eIF-4G1|eIF4GI	eukaryotic translation initiation factor 4, gamma 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21718225-2	chr9	21717725	21718725	+	895.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-5351.0	NM_001252658	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5603964-2	chr17	5603464	5604464	+	895.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	MLT1A|LTR|ERVL-MaLR	111364.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81303932-3	chr7	81303429	81304429	+	895.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 8 of 21)	intron (NM_008803, intron 8 of 21)	41305.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151581823-4	chr1	151581316	151582316	+	895.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	HAL1M8|LINE|L1	10443.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-40866594-3	chr13	40866096	40867096	+	895.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023887, intron 1 of 2)	RMER16_Mm|LTR|ERVK	6828.0	NM_023887	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167537631-3	chr2	167537126	167538126	+	895.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011427)	promoter-TSS (NM_011427)	-569.0	NM_011427	20613.0	Mm.2093	NM_011427	ENSMUSG00000042821	Snai1	Sna|Sna1|Snail|Snail1	snail family zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17650208-2	chr16	17649708	17650708	+	895.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_033609)	TTS (NM_033609)	3738.0	NM_001166164	72315.0	Mm.297777	NM_001166164	ENSMUSG00000041617	Ccdc74a	2310015A05Rik	coiled-coil domain containing 74A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6454769-2	chr4	6454269	6455269	+	895.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010945)	promoter-TSS (NM_010945)	-498.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-98185425-4	chr5	98184906	98185906	+	895.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029947, exon 4 of 4)	exon (NM_029947, exon 4 of 4)	578.0	NR_153823	102637492.0	Mm.399020	NR_153823		A730035I17Rik	Gm34285	RIKEN cDNA A730035I17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12892295-4	chr17	12891812	12892812	+	895.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034866, intron 14 of 18)	intron (NM_001034866, intron 14 of 18)	16278.0	NM_030726	80978.0	Mm.160368	NM_030726	ENSMUSG00000059408	Mrgprh	Gpr90|Mgrb|MrgH	MAS-related GPR, member H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103364380-4	chr11	103363874	103364874	+	895.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183288)	promoter-TSS (NM_183288)	-682.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	11.0	38.5	17.0	25.0	40.0	22.0
Merged-chr17-26069511-4	chr17	26068995	26069995	+	895.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162868)	promoter-TSS (NM_001162868)	-318.0	NM_001162869	215445.0	Mm.41191	NM_153140	ENSMUSG00000037098	Rab11fip3	Cart1|D030060O14Rik|Rab11-FIP3|mKIAA0665	RAB11 family interacting protein 3 (class II)	protein-coding	0.0	0.0	3.0	0.0	2.0	1.0
Merged-chr11-54236827-2	chr11	54236327	54237327	+	895.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13072.0	NM_009969	12981.0	Mm.4922	NM_009969	ENSMUSG00000018916	Csf2	CSF|Csfgm|GMCSF|Gm-CSf|MGI-IGM	colony stimulating factor 2 (granulocyte-macrophage)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-86960712-1	chr3	86960212	86961212	+	895.0	f0_balb.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-25874.0	NM_001289449	12480.0	Mm.389465	NM_007640	ENSMUSG00000041750	Cd1d2	CD1.2|Cd1b|Ly-38	CD1d2 antigen	protein-coding	40.0	4.5	12.0	26.0	23.5	43.0
Merged-chr2-4561147-2	chr2	4560647	4561647	+	895.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 1 of 11)	intron (NM_001177844, intron 1 of 11)	1393.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77406486-1	chr11	77405986	77406986	+	895.0	f0_balb.idr	intron (NM_177710, intron 4 of 14)	ORR1D2|LTR|ERVL-MaLR	-57427.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88066867-4	chr6	88066372	88067372	+	895.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-17601.0	NM_133933	103963.0	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	1.0	0.0	2.0	1.0	0.0	2.0
Merged-chr2-158141235-2	chr2	158140735	158141735	+	895.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 2 of 12)	intron (NM_009373, intron 2 of 12)	5157.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-90461940-2	chr6	90461440	90462440	+	895.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023184)	promoter-TSS (NM_023184)	-636.0	NM_001355668	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-28841857-3	chr2	28841363	28842363	+	895.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033294, intron 1 of 19)	intron (NM_001033294, intron 1 of 19)	1457.0	NM_001033294	227674.0	Mm.44179	NM_001033294	ENSMUSG00000026806	Ddx31	5830444G11Rik|Gm997	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45118302-2	chr17	45117802	45118802	+	895.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178652, intron 11 of 11)	intron (NM_178652, intron 11 of 11)	-237417.0	NM_029257	75341.0	Mm.386821	NM_029257		4930564C03Rik	-	RIKEN cDNA 4930564C03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-65805915-3	chr14	65805435	65806435	+	895.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023209)	promoter-TSS (NM_023209)	24.0	NM_023209	52033.0	Mm.24337	NM_023209	ENSMUSG00000022033	Pbk	2810434B10Rik|AW538537|D14Ertd732e|TOPK	PDZ binding kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46731381-2	chr8	46730881	46731881	+	895.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045750, exon 3 of 3)	non-coding (NR_045750, exon 3 of 3)	8134.0	NR_045750	100503498.0	Mm.187358	NR_045750	ENSMUSG00000097534	Gm16675	-	predicted gene, 16675	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79875712-2	chr10	79875212	79876212	+	895.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-1078.0	NR_033210	216152.0	Mm.29678	NM_181681	ENSMUSG00000035835	Plppr3	Lppr3|Prg2	phospholipid phosphatase related 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35992210-2	chr17	35991710	35992710	+	895.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2294.0	NR_015618	77810.0	Mm.483143	NR_015618		A930015D03Rik	-	RIKEN cDNA A930015D03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134357162-2	chr4	134356652	134357652	+	895.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019578, exon 11 of 11)	3' UTR (NM_019578, exon 11 of 11)	13686.0	NM_001346578	230810.0	Mm.358876	NM_001039677	ENSMUSG00000028836	Slc30a2	ZnT-2|Znt2	solute carrier family 30 (zinc transporter), member 2	protein-coding	0.5	1.5	8.0	0.0	4.0	2.5
Merged-chr2-62668774-2	chr2	62668274	62669274	+	895.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145523, intron 1 of 7)	B1_Mus2|SINE|Alu	4447.0	NM_145523	227960.0	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-94274247-2	chr2	94273747	94274747	+	895.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-12848.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24443336-2	chr5	24442836	24443836	+	895.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_023229, exon 3 of 10)	exon (NM_023229, exon 3 of 10)	1899.0	NM_023229	66587.0	Mm.28123	NM_023229	ENSMUSG00000028959	Fastk	0610011K02Rik|610011K02Rik	Fas-activated serine/threonine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155061176-2	chr1	155060676	155061676	+	895.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22088.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52621573-2	chr13	52621073	52622073	+	895.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 4 of 13)	intron (NM_011518, intron 4 of 13)	24691.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173308491-2	chr2	173307991	173308991	+	895.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31958.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0.5	0.0	1.0	0.0	0.0	1.0
Merged-chr5-64385110-4	chr5	64384624	64385624	+	895.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	82818.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	0.0	0.0	0.0	0.5	1.5	0.0
Merged-chr5-38219501-1	chr5	38219001	38220001	+	895.0	f1_balb.idr	promoter-TSS (NM_025281)	promoter-TSS (NM_025281)	953.0	NM_029162	75079.0	Mm.258741	NM_029162	ENSMUSG00000029127	Zbtb49	4930518A03Rik|Zfp509|Znf509	zinc finger and BTB domain containing 49	protein-coding	3.5	0.0	3.5	0.0	8.5	0.0
Merged-chr6-128065568-3	chr6	128065038	128066038	+	894.9833369999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356301, intron 1 of 7)	intron (NM_001356301, intron 1 of 7)	78040.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	0.0	6.5	2.5	0.0	0.0	2.0
Merged-chr16-25038710-4	chr16	25038217	25039217	+	894.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20922.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55818143-4	chr19	55817650	55818650	+	894.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	76340.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	1.5	8.5	2.0	0.0	4.5	0.0
Merged-chr2-157458634-4	chr2	157458138	157459138	+	894.962524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 5 of 13)	intron (NM_001025395, intron 5 of 13)	34345.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	2.5	7.5	0.0	0.5	2.0	0.0
Merged-chr5-66016325-4	chr5	66015809	66016809	+	894.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001127382)	TTS (NM_001127382)	-12024.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75588765-4	chr2	75588271	75589271	+	894.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70488.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76593855-4	chr11	76593374	76594374	+	894.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16135.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21783935-4	chr13	21783500	21784500	+	894.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178207)	promoter-TSS (NM_178207)	-603.0	NM_178207	319153.0	Mm.390558	NM_178207	ENSMUSG00000101972	Hist1h3i	H3-H	histone cluster 1, H3i	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148085365-4	chr4	148084885	148085885	+	894.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301281, intron 1 of 4)	intron (NM_001301281, intron 1 of 4)	2679.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75298762-4	chr10	75298253	75299253	+	894.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153406, intron 13 of 15)	intron (NM_153406, intron 13 of 15)	-18124.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37448438-4	chr19	37447927	37448927	+	894.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13586.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60525439-2	chr18	60524993	60525993	+	894.916626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357462)	promoter-TSS (NM_001357462)	-661.0	NM_026302	67665.0	Mm.272801	NM_026302	ENSMUSG00000024603	Dctn4	1110001K06Rik|4930547K17Rik|C130039E17Rik|p62	dynactin 4	protein-coding	46.0	126.5	81.5	90.0	229.0	160.0
Merged-chr14-104474643-4	chr14	104474163	104475163	+	894.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6664.0	NM_011143	18996.0	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-8653668-3	chr8	8653187	8654187	+	894.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010111, intron 1 of 4)	intron (NM_010111, intron 1 of 4)	7086.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60737306-2	chr13	60736809	60737809	+	894.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 18 of 26)	intron (NM_134062, intron 18 of 26)	49055.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0.0	19.0	9.0	7.5	14.0	5.5
Merged-chr16-30773005-4	chr16	30772482	30773482	+	894.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	173259.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158143439-3	chr2	158142875	158143875	+	894.875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 1 of 12)	intron (NM_009373, intron 1 of 12)	3017.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-47080566-5	chr4	47080086	47081086	+	894.8666380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11367.0	NM_172693	230145.0	Mm.132246	NM_172693	ENSMUSG00000039774	Galnt12	9130206E10|A630062B03Rik	polypeptide N-acetylgalactosaminyltransferase 12	protein-coding	5.5	20.0	6.0	0.0	8.5	4.5
Merged-chr8-46305890-2	chr8	46305390	46306390	+	894.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11219.0	NM_173789	234219.0	Mm.145631	NM_173789	ENSMUSG00000047171	Helt	A830086M02|Hesl|Heslike|Mgn|megane	helt bHLH transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155224168-2	chr4	155223668	155224668	+	894.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1633.0	NM_001357191	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-13472539-2	chr17	13472039	13473039	+	894.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48917.0	NR_030763	272667.0	Mm.444718	NR_030763	ENSMUSG00000079711	Smok4a	4930513D10Rik|Smok2c	sperm motility kinase 4A	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139287630-3	chr4	139287136	139288136	+	894.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 7 of 9)	intron (NM_001037761, intron 7 of 9)	23072.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	0.0	5.5	10.0	1.5	14.0	9.0
Merged-chr16-48812188-3	chr16	48811700	48812700	+	894.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4656.0	NM_023881	57263.0	Mm.21123	NM_023881	ENSMUSG00000022650	Retnlb	9030012B21Rik|Fizz2|RELMbeta|Relmb|Xcp3	resistin like beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119229128-4	chr11	119228612	119229612	+	894.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172443)	promoter-TSS (NM_172443)	540.0	NM_175430	207607.0	Mm.189885	NM_175430	ENSMUSG00000039963	Ccdc40	B930008I02Rik	coiled-coil domain containing 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61698907-3	chr14	61698417	61699417	+	894.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16544.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	8.5	8.5	14.5	13.0	20.5	22.0
Merged-chr8-80996789-2	chr8	80996289	80997289	+	894.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_027554, intron 4 of 9)	(A)n|Simple_repeat|Simple_repeat	18117.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	1.5	17.5	3.0	1.0	6.5	5.0
Merged-chr7-74668385-4	chr7	74667895	74668895	+	894.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113615.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146915003-3	chr3	146914504	146915504	+	894.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302957, intron 9 of 21)	intron (NM_001302957, intron 9 of 21)	62637.0	NM_001302957	70892.0	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-26506994-4	chr19	26506506	26507506	+	894.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-98154.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5425654-4	chr6	5425120	5426120	+	894.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355662, intron 3 of 4)	intron (NM_001355662, intron 3 of 4)	35210.0	NM_001355662	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	3.0	5.0	0.0	0.0	7.5	5.5
Merged-chr5-123068030-3	chr5	123067525	123068525	+	894.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTA)n|Simple_repeat|Simple_repeat	-8250.0	NM_001039723	330189.0	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80812693-2	chr12	80812193	80813193	+	894.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	22161.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107864144-4	chr3	107863661	107864661	+	894.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13069.0	NM_133867	99662.0	Mm.108491	NM_133867	ENSMUSG00000040600	Eps8l3	AI504489|Eps8r3	EPS8-like 3	protein-coding	0.0	0.0	0.5	2.0	2.0	1.0
Merged-chr14-49063066-4	chr14	49062568	49063568	+	894.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207214, intron 1 of 17)	intron (NM_207214, intron 1 of 17)	-3481.0	NM_001360070	74385.0	Mm.379235	NM_144535	ENSMUSG00000036291	Ap5m1	4932432K03Rik|Mu5|Mudeng	adaptor-related protein complex 5, mu 1 subunit	protein-coding	12.0	1.5	3.5	13.5	0.0	4.5
Merged-chr8-94812896-6	chr8	94812333	94813333	+	894.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011332)	TTS (NM_011332)	2380.0	NM_011332	20295.0	Mm.41988	NM_011332	ENSMUSG00000031780	Ccl17	Abcd-2|Scya17|Scya17l|Tarc	chemokine (C-C motif) ligand 17	protein-coding	0.0	0.0	1.0	0.0	11.0	0.0
Merged-chr18-10869589-4	chr18	10869094	10870094	+	894.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-84042.0	NR_029781	723959.0		NR_029781	ENSMUSG00000106348	Mir1a-2	Mir1-2|Mirn1-2|mir-1a-2|mmu-mir-1-2|mmu-mir-1a-2	microRNA 1a-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-28146147-4	chr3	28145683	28146683	+	894.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-117031.0	NM_001163007	665113.0	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33024002-4	chr16	33023489	33024489	+	894.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178378, intron 8 of 10)	LTR41B|LTR|ERVL	32197.0	NM_178378	69707.0	Mm.227918	NM_178378	ENSMUSG00000035578	Iqcg	2400003L07Rik|G1-374-12|esgd12d|repro1|stubby12d	IQ motif containing G	protein-coding	0.0	2.5	6.0	0.0	0.0	1.0
Merged-chr12-78791493-3	chr12	78790923	78791923	+	894.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019579, intron 1 of 14)	intron (NM_019579, intron 1 of 14)	42476.0	NM_019579	56217.0	Mm.425777	NM_019579	ENSMUSG00000021112	Mpp5	3830420B02Rik|AI255216|AI644496|Pals1	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)	protein-coding	3.0	29.0	41.5	22.5	49.0	42.0
Merged-chr11-59578357-3	chr11	59577897	59578897	+	894.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6659.0	NM_001011789	257962.0	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134703359-5	chr4	134702862	134703862	+	894.773315	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_207237, exon 1 of 12)	exon (NM_207237, exon 1 of 12)	928.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91153739-4	chr6	91153227	91154227	+	894.770874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3088.0	NM_144919	232232.0	Mm.206218	NM_144919	ENSMUSG00000034245	Hdac11	-	histone deacetylase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87074123-4	chr11	87073615	87074615	+	894.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025638)	promoter-TSS (NM_025638)	22.0	NM_025638	66569.0	Mm.281887	NM_025638	ENSMUSG00000061666	Gdpd1	2610020H15Rik	glycerophosphodiester phosphodiesterase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6481602-4	chr19	6481118	6482118	+	894.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 10 of 22)	intron (NM_001205234, intron 10 of 22)	61452.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126749605-2	chr7	126749105	126750105	+	894.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10021.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83865389-2	chr17	83864889	83865889	+	894.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A|LTR|ERVK	-10971.0	NR_155491	320021.0	Mm.379475	NR_155490		C430042M11Rik	-	RIKEN cDNA C430042M11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4234487-4	chr18	4233993	4234993	+	894.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	68661.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99971913-2	chr15	99971413	99972413	+	894.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284523)	promoter-TSS (NM_001284523)	-867.0	NM_001024526	207214.0	Mm.28811	NM_001024526	ENSMUSG00000023025	Larp4	DXErtd793|DXErtd793e	La ribonucleoprotein domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12936972-4	chr18	12936490	12937490	+	894.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207530, intron 1 of 27)	RMER6B|LTR|ERVK	4851.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71704113-3	chr17	71703611	71704611	+	894.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177087, intron 10 of 19)	intron (NM_177087, intron 10 of 19)	30850.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	2.0	0.0	1.5	0.0	0.0	1.5
Merged-chr11-99186310-4	chr11	99185828	99186828	+	894.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31251.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0.5	5.0	6.5	2.5	10.5	2.0
Merged-chr6-82909476-4	chr6	82908941	82909941	+	894.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-27588.0	NR_040520	69652.0	Mm.96357	NR_040520	ENSMUSG00000100291	2310069B03Rik	-	RIKEN cDNA 2310069B03 gene	ncRNA	3.0	33.0	4.0	0.0	10.5	6.0
Merged-chr18-84720204-4	chr18	84719702	84720702	+	894.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173770)	promoter-TSS (NM_173770)	58.0	NM_173770	240479.0	Mm.472378	NM_173770	ENSMUSG00000047992	Fam69c	B230399E16Rik	family with sequence similarity 69, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-9008433-6	chr8	9007979	9008979	+	894.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	123809.0	NR_045854	71249.0	Mm.158635	NR_045854	ENSMUSG00000108848	4933430N04Rik	-	RIKEN cDNA 4933430N04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123670717-2	chr5	123670217	123671217	+	894.6999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359224, intron 1 of 18)	intron (NM_001359224, intron 1 of 18)	13644.0	NM_019765	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	8.5	7.0	8.5	4.0	4.0	1.0
Merged-chr4-59837943-4	chr4	59837410	59838410	+	894.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	intron (NM_172468, intron 1 of 8)	32260.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	37.5	36.0	22.0	20.5	22.0	20.0
Merged-chr1-181077541-3	chr1	181077034	181078034	+	894.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26297.0	NM_001033819	619326.0	Mm.355174	NM_001033819	ENSMUSG00000038768	9130409I23Rik	-	RIKEN cDNA 9130409I23 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120631690-3	chr11	120631197	120632197	+	894.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010756, intron 1 of 2)	intron (NM_010756, intron 1 of 2)	1850.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62469990-4	chr15	62469487	62470487	+	894.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-250536.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106151252-4	chr8	106150747	106151747	+	894.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357319, intron 1 of 5)	intron (NM_001357319, intron 1 of 5)	893.0	NM_001357319	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-69557286-3	chr9	69556795	69557795	+	894.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100351.0	NR_037296	100526560.0		NR_037296	ENSMUSG00000093042	Mir3109	mir-3109|mmu-mir-3109	microRNA 3109	ncRNA	4.0	6.0	7.0	0.0	1.0	3.0
Merged-chr2-179948992-4	chr2	179948500	179949500	+	894.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081092, intron 1 of 14)	intron (NM_001081092, intron 1 of 14)	27646.0	NM_001081092	228980.0	Mm.235542	NM_001081092	ENSMUSG00000039117	Taf4	135kDa|AI450312|TAFII130|TAFII135|Taf2c1|Taf4a	TATA-box binding protein associated factor 4	protein-coding	1.0	0.0	1.5	0.0	0.0	0.0
Merged-chr16-21403575-5	chr16	21403028	21404028	+	894.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-19590.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99217497-3	chr5	99217015	99218015	+	894.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145839)	TTS (NM_145839)	35412.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39779406-4	chr6	39778936	39779936	+	894.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31500.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-61986650-3	chr15	61986103	61987103	+	894.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177353, intron 1 of 2)	CpG	1262.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123372341-3	chr5	123371843	123372843	+	894.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029850, exon 6 of 6)	3' UTR (NM_029850, exon 6 of 6)	-22455.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150048589-3	chr4	150048110	150049110	+	894.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19844.0	NR_029751	723848.0		NR_029751	ENSMUSG00000065493	Mir34a	Mirn34a|mir-34a|mmu-mir-34a	microRNA 34a	ncRNA	0.0	2.0	1.5	0.0	0.0	1.5
Merged-chr3-95280944-2	chr3	95280444	95281444	+	894.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_173347, intron 1 of 7)	intron (NM_173347, intron 1 of 7)	1132.0	NM_173347	229589.0	Mm.14155	NM_173347	ENSMUSG00000015711	Prune1	9230112O05Rik|C130058A12|DRES-17|HTCD37|PRUNEM1|Prune|Prune-M1	prune exopolyphosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-115313947-2	chr10	115313447	115314447	+	894.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_024454, intron 1 of 6)	intron (NM_024454, intron 1 of 6)	1644.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173412657-2	chr1	173412166	173413166	+	894.666626	f0_c57.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-7938.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	41.0	118.5	70.0	62.0	106.5	45.5
Merged-chr12-85589465-7	chr12	85588973	85589973	+	894.64624	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9632.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84072363-4	chr15	84071862	84072862	+	894.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7013.0	NM_029946	77627.0	Mm.196288	NM_029946	ENSMUSG00000022441	Efcab6	4931407K02Rik|4932408N08Rik|bM150J22.2|mKIAA1672	EF-hand calcium binding domain 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-38931511-4	chr19	38930983	38931983	+	894.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008234, exon 2 of 22)	exon (NM_008234, exon 2 of 22)	493.0	NM_008234	15201.0	Mm.57223	NM_008234	ENSMUSG00000025001	Hells	AI323785|E130115I21Rik|LSH|Lysh|PASG|YFK8	helicase, lymphoid specific	protein-coding	2.5	0.5	1.5	0.0	2.0	2.5
Merged-chr10-44428246-6	chr10	44427781	44428781	+	894.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30467.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80778573-4	chr7	80778030	80779030	+	894.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	24801.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	194.0	343.0	236.0	111.0	193.5	141.0
Merged-chr2-128815705-4	chr2	128815204	128816204	+	894.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2599.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	10.5	14.5	7.0	13.5	21.5	14.5
Merged-chr14-36867151-4	chr14	36866656	36867656	+	894.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52379.0	NM_001347503	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118159446-2	chr11	118158946	118159946	+	894.5833130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30227.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3288675-4	chr8	3288128	3289128	+	894.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	-9011.0	NM_001330056	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-13559511-4	chr2	13559003	13560003	+	894.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14808.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86487082-4	chr11	86486565	86487565	+	894.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029788, intron 3 of 8)	intron (NM_029788, intron 3 of 8)	2408.0	NM_029788	76892.0	Mm.262707	NM_029788	ENSMUSG00000020521	Rnft1	0610013E23Rik|AV007605	ring finger protein, transmembrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82942943-4	chr18	82942454	82943454	+	894.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177464, intron 1 of 5)	intron (NM_001177464, intron 1 of 5)	-22394.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-86016126-3	chr9	86015639	86016639	+	894.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	173287.0	NM_001164792	21983.0	Mm.20864	NM_011627	ENSMUSG00000035274	Tpbg	5T4|AW495680|WAIF1	trophoblast glycoprotein	protein-coding	7.5	0.0	8.0	3.0	0.0	4.0
Merged-chr17-28967291-4	chr17	28966783	28967783	+	894.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001356299, exon 7 of 7)	3' UTR (NM_001356299, exon 7 of 7)	14067.0	NM_025888	66989.0	Mm.435	NM_025888	ENSMUSG00000005936	Kctd20	2410004N11Rik|AI451943|AW541186|D17Ertd562e	potassium channel tetramerisation domain containing 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25197962-4	chr12	25197489	25198489	+	894.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68815.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	18.0	15.0	17.5	7.0	11.0	16.0
Merged-chr6-146746751-4	chr6	146746257	146747257	+	894.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346666, intron 1 of 11)	intron (NM_001346666, intron 1 of 11)	21827.0	NM_172734	232533.0	Mm.322121	NM_172734	ENSMUSG00000001630	Stk38l	4930473A22Rik|Ndr2|Ndr54	serine/threonine kinase 38 like	protein-coding	17.5	12.5	9.5	2.5	22.0	3.0
Merged-chr10-77519347-4	chr10	77518852	77519852	+	894.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3539.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66295935-4	chr14	66295443	66296443	+	894.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038077, intron 2 of 2)	MTD|LTR|ERVL-MaLR	-1082.0	NM_029979	66854.0	Mm.43871	NM_029979	ENSMUSG00000022043	Trim35	0710005M05Rik|A430106H13Rik|AW046487|HLS5|Mair|NC8|mKIAA1098	tripartite motif-containing 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99396901-5	chr15	99396440	99397440	+	894.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171036, intron 2 of 10)	ID4|SINE|ID	3721.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	16.0	76.0	42.0	35.0	106.0	88.0
Merged-chr3-116486682-2	chr3	116486156	116487156	+	894.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	21519.0	NM_025517	66368.0	Mm.251228	NM_025517	ENSMUSG00000000339	Rtca	2310009A18Rik|AI450277|RPC|Rtcd1	RNA 3'-terminal phosphate cyclase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4282494-2	chr19	4281994	4282994	+	894.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026720, intron 1 of 14)	intron (NM_026720, intron 1 of 14)	643.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-67020415-2	chr11	67019915	67020915	+	894.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4739.0	NM_001291042	338369.0	Mm.128138	NM_177392	ENSMUSG00000050270	Tmem220	-	transmembrane protein 220	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173878493-2	chr1	173877993	173878993	+	894.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170853, intron 2 of 9)	intron (NM_001170853, intron 2 of 9)	1694.0	NM_001170853	100040462.0	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	50.5	114.5	58.0	32.5	88.5	42.5
Merged-chr9-118506907-6	chr9	118506393	118507393	+	894.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018748, intron 1 of 23)	CpG	575.0	NM_018748	54214.0	Mm.10409	NM_018748	ENSMUSG00000038708	Golga4	AI225887|AU019508|Olp-1	golgi autoantigen, golgin subfamily a, 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9074941-2	chr19	9074430	9075430	+	894.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_104460, intron 6 of 6)	ORR1F|LTR|ERVL-MaLR	13026.0	NM_011681	22287.0	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	0.5	0.5	0.0	0.0	3.5	2.0
Merged-chr1-88256063-2	chr1	88255563	88256563	+	894.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001281466, exon 35 of 42)	exon (NM_001281466, exon 35 of 42)	13345.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111036322-2	chr8	111035822	111036822	+	894.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146217, intron 1 of 20)	intron (NM_146217, intron 1 of 20)	2480.0	NM_146217	234734.0	Mm.24174	NM_146217	ENSMUSG00000031960	Aars	AI316495|C76919|sti	alanyl-tRNA synthetase	protein-coding	0.0	1.0	1.0	0.0	3.0	0.0
Merged-chr8-11101947-2	chr8	11101447	11102447	+	894.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93517.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166153405-2	chr2	166152905	166153905	+	894.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355619, intron 1 of 21)	intron (NM_001355619, intron 1 of 21)	1880.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29533774-2	chr6	29533274	29534274	+	894.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252382, intron 2 of 8)	intron (NM_001252382, intron 2 of 8)	4492.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25284539-4	chr15	25284034	25285034	+	894.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	129230.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58721540-2	chr1	58721040	58722040	+	894.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	8254.0	NM_001355056	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-55327422-4	chr9	55326911	55327911	+	894.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172923, intron 1 of 10)	intron (NM_172923, intron 1 of 10)	498.0	NM_001357568	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3102079-2	chr11	3101597	3102597	+	894.5	f0_balb.idr|f1_balb.idr	Intergenic	GSAT_MM|Satellite|Satellite	-21924.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44896991-2	chr7	44896491	44897491	+	894.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_027376, exon 3 of 11)	exon (NM_027376, exon 3 of 11)	912.0	NM_027376	70300.0	Mm.276298	NM_027376	ENSMUSG00000011658	Fuz	2600013E07Rik|b2b1273Clo	fuzzy planar cell polarity protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37173513-2	chr19	37173013	37174013	+	894.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045329)	promoter-TSS (NR_045329)	-330.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35633533-2	chr8	35633030	35634030	+	894.5	f0_balb.idr|f1_balb.idr	intron (NM_001081279, intron 1 of 2)	B4A|SINE|B4	-44510.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	14.0	40.0	14.5	11.5	33.5	10.0
Merged-chr4-125125737-6	chr4	125125228	125126228	+	894.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153159, intron 2 of 5)	intron (NM_153159, intron 2 of 5)	2153.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90212278-2	chr3	90211778	90212778	+	894.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027015)	TTS (NM_027015)	1369.0	NM_001190258	100043813.0	Mm.270283	NM_001190258	ENSMUSG00000050621	Rps27rt	Gm9846|Rps27l2	ribosomal protein S27, retrogene	protein-coding	6.0	7.5	4.0	3.5	8.0	5.5
Merged-chr5-118556506-4	chr5	118556012	118557012	+	894.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4207.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95519691-2	chr3	95519191	95520191	+	894.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7095.0	NM_021281	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	24.0	38.0	36.0	15.5	83.0	54.0
Merged-chr1-9813105-3	chr1	9812602	9813602	+	894.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177547, intron 1 of 16)	RSINE1|SINE|B4	14972.0	NM_177547	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165471692-2	chr1	165471192	165472192	+	894.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027430, intron 1 of 4)	PB1D9|SINE|Alu	10484.0	NM_027430	70456.0	Mm.195625	NM_027430	ENSMUSG00000026568	Mpc2	0610006C01Rik|2010002I07Rik|2610205H19Rik|AA108335|Brp44|ESTM43	mitochondrial pyruvate carrier 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36740425-2	chr18	36739925	36740925	+	894.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028036, intron 9 of 11)	intron (NM_028036, intron 9 of 11)	4162.0	NM_010885	17991.0	Mm.29867	NM_010885	ENSMUSG00000014294	Ndufa2	AV000592|B8|C1-B8|CI-B8	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2	protein-coding	0.0	0.0	0.5	0.0	0.0	1.5
Merged-chr15-27923011-2	chr15	27922511	27923511	+	894.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	B2_Mm2|SINE|B2	102837.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4651881-2	chr7	4651381	4652381	+	894.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172894, intron 1 of 23)	intron (NM_172894, intron 1 of 23)	7069.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-181012733-2	chr1	181012233	181013233	+	894.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010145, intron 1 of 8)	RMER10A|LTR|ERVL	4836.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79027909-2	chr15	79027409	79028409	+	894.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008197)	promoter-TSS (NM_008197)	-303.0	NM_008197	14958.0	Mm.24350	NM_008197	ENSMUSG00000096210	H1f0	D130017D06Rik|H1(0)|H1fv	H1 histone family, member 0	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81602649-2	chr10	81602149	81603149	+	894.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1749.0	NM_001346695	114606.0	Mm.206764	NM_053254	ENSMUSG00000034758	Tle6	1810057E06Rik|Grg6	transducin-like enhancer of split 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-13303595-2	chr7	13303095	13304095	+	894.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083188, intron 20 of 28)	MLT1J|LTR|ERVL-MaLR	-22072.0	NM_001168504	232889.0	Mm.223639	NM_001004762	ENSMUSG00000033847	Pla2g4c	D7Ertd445e	phospholipase A2, group IVC (cytosolic, calcium-independent)	protein-coding	0.0	2.0	5.0	0.5	2.0	5.0
Merged-chr12-102524402-4	chr12	102523895	102524895	+	894.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30546.0	NM_007693	12652.0	Mm.4137	NM_007693	ENSMUSG00000021194	Chga	ChrA|cgA	chromogranin A	protein-coding	3.0	4.0	0.5	0.0	4.5	2.0
Merged-chr7-6343776-3	chr7	6343308	6344308	+	894.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13374.0	NM_001033249	213011.0	Mm.333558	NM_001033249	ENSMUSG00000030443	Zfp583	BC056221|Znf583	zinc finger protein 583	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23374367-2	chr16	23373867	23374867	+	894.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-54766.0	NM_001004151	239766.0	Mm.208751	NM_001004151	ENSMUSG00000033383	Rtp1	Gm1766|Gm604	receptor transporter protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25114411-2	chr17	25113837	25114837	+	894.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027880, intron 2 of 20)	B3|SINE|B2	1568.0	NM_027880	71718.0	Mm.288702	NM_027880	ENSMUSG00000024170	Telo2	1200003M09Rik|AI415602|Tel2|mKIAA0683	telomere maintenance 2	protein-coding	5.0	3.5	8.0	10.5	6.5	1.5
Merged-chr14-73175235-2	chr14	73174735	73175735	+	894.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134083, intron 12 of 14)	intron (NM_134083, intron 12 of 14)	31616.0	NR_030459	751541.0		NR_030459	ENSMUSG00000076121	Mir687	Mirn687|mir-687|mmu-mir-687	microRNA 687	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-149103640-4	chr3	149103143	149104143	+	894.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-149008.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	3.0	6.0	3.0	2.0	3.0	3.0
Merged-chr1-134194317-2	chr1	134193817	134194817	+	894.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357515, intron 2 of 10)	intron (NM_001357515, intron 2 of 10)	869.0	NM_016749	53311.0	Mm.379067	NM_016749	ENSMUSG00000042451	Mybph	AI385643|MyBP-H	myosin binding protein H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-64126039-2	chr14	64125521	64126521	+	894.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253715, intron 4 of 4)	intron (NM_001253715, intron 4 of 4)	21698.0	NM_028525	73382.0	Mm.481055	NM_028525	ENSMUSG00000021966	Prss52	1700049K14Rik|Tesp3	protease, serine 52	protein-coding	0.0	0.5	0.0	1.5	0.0	0.0
Merged-chr18-24654471-4	chr18	24653912	24654912	+	894.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026779, intron 1 of 14)	intron (NM_026779, intron 1 of 14)	721.0	NM_026779	68591.0	Mm.28252	NM_026779	ENSMUSG00000039616	Mocos	1110018O12Rik|HMCS|MCS|MOS	molybdenum cofactor sulfurase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8990452-4	chr3	8989860	8990860	+	894.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	13844.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	29.5	80.0	54.0	14.5	56.5	42.0
Merged-chr8-120812274-3	chr8	120811793	120812793	+	894.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73654.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99220579-4	chr5	99220036	99221036	+	894.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 13 of 13)	intron (NM_181318, intron 13 of 13)	32391.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86657364-4	chr4	86656851	86657851	+	894.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007408, exon 8 of 8)	exon (NM_007408, exon 8 of 8)	12708.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	4.0	16.0	15.0	9.0	11.0	7.5
Merged-chr16-30788367-3	chr16	30787884	30788884	+	894.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	188661.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119067808-3	chr9	119067308	119068308	+	894.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011700, intron 15 of 18)	intron (NM_011700, intron 15 of 18)	15030.0	NM_001164567	22351.0	Mm.83817	NM_011700	ENSMUSG00000038775	Vill	Villp	villin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-74641227-3	chr5	74640728	74641728	+	894.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159577, intron 2 of 10)	intron (NM_001159577, intron 2 of 10)	36644.0	NM_001159580	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	0.0	0.0	2.0	11.0	2.0	0.0
Merged-chr4-135855160-3	chr4	135854609	135855609	+	894.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010178)	promoter-TSS (NM_010178)	-962.0	NM_001284196	14105.0	Mm.10229	NM_010178	ENSMUSG00000028676	Srsf10	FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12938389-4	chr18	12937887	12938887	+	894.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207530, intron 1 of 27)	intron (NM_207530, intron 1 of 27)	3454.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53064800-2	chr4	53064300	53065300	+	894.4285890000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 30 of 49)	ORR1D1|LTR|ERVL-MaLR	52920.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25831517-4	chr15	25831008	25832008	+	894.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11790.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94198963-4	chr11	94198464	94199464	+	894.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12490.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0.0	2.0	0.0	0.0	1.0	0.0
Merged-chr8-88272626-4	chr8	88272141	88273141	+	894.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007406, intron 1 of 27)	CpG	238.0	NM_007406	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0.0	0.0	0.0	0.0	2.0	1.5
Merged-chr10-77902354-4	chr10	77901855	77902855	+	894.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145152, intron 1 of 1)	CpG	181.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94144206-4	chr13	94143710	94144710	+	894.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	86414.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35814982-4	chr17	35814364	35815364	+	894.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6849.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	15.5	49.0	18.0	3.5	27.0	8.5
Merged-chr14-40894810-4	chr14	40894346	40895346	+	894.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1881.0	NM_177816	328381.0	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5852636-2	chr19	5852136	5853136	+	894.375	f1_balb.idr|f1_c57bl6.idr	exon (NM_026169, exon 11 of 11)	exon (NM_026169, exon 11 of 11)	-7156.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133931556-4	chr4	133931049	133932049	+	894.3583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	36442.0	NM_016957	15331.0	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	4.5	18.0	0.5	9.0	7.0	2.5
Merged-chr8-23038649-4	chr8	23038266	23039266	+	894.3583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277284, intron 1 of 42)	intron (NM_001277284, intron 1 of 42)	3667.0	NM_001277284	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	7.5	5.5	16.5	0.0	3.5	0.0
Merged-chr16-91936572-4	chr16	91936086	91937086	+	894.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4956.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25567987-2	chr17	25567487	25568487	+	894.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_011447, exon 3 of 3)	exon (NM_011447, exon 3 of 3)	2699.0	NM_011447	20681.0	Mm.258220	NM_011447	ENSMUSG00000024176	Sox8	-	SRY (sex determining region Y)-box 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77501624-2	chr11	77501124	77502124	+	894.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004144, intron 7 of 19)	intron (NM_001004144, intron 7 of 19)	8212.0	NM_001004144	216963.0	Mm.290182	NM_001004144	ENSMUSG00000011877	Git1	Cat-1|p95Cat	G protein-coupled receptor kinase-interactor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8206396-3	chr15	8205884	8206884	+	894.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162906, intron 21 of 52)	L1_Mus2|LINE|L1	37278.0	NM_001162906	73692.0	Mm.164436	NM_001162906	ENSMUSG00000039801	2410089E03Rik	4732468D17Rik|Hug|Jbts17|b2b012Clo	RIKEN cDNA 2410089E03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97433316-3	chr11	97432817	97433817	+	894.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16843.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	3.5	3.5	1.5	0.0	3.0	0.5
Merged-chr2-129601228-5	chr2	129600644	129601644	+	894.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	5682.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	27.0	85.0	58.5	55.0	75.0	52.0
Merged-chr17-86168786-3	chr17	86168276	86169276	+	894.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011104, exon 1 of 15)	exon (NM_011104, exon 1 of 15)	991.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	1.0	0.0	3.0	1.5	1.5	0.0
Merged-chr3-109452175-1	chr3	109451675	109452675	+	894.3333130000001	f0_balb.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	111492.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	26.0	41.5	41.0	21.0	59.5	57.0
Merged-chr11-61714766-3	chr11	61714266	61715266	+	894.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033227, intron 6 of 15)	intron (NM_001033227, intron 6 of 15)	6033.0	NM_001033227	109342.0	Mm.441070	NM_001033227	ENSMUSG00000042371	Slc5a10	C330021F16Rik|SGLT5	solute carrier family 5 (sodium/glucose cotransporter), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80081361-3	chr7	80080828	80081828	+	894.31665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001146000, exon 2 of 6)	exon (NM_001146000, exon 2 of 6)	-6071.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	1.0	1.5	4.0	1.0	5.0	3.0
Merged-chr15-77837893-4	chr15	77837396	77838396	+	894.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	4279.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100936334-4	chr12	100935832	100936832	+	894.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026681, intron 20 of 29)	intron (NM_026681, intron 20 of 29)	-28134.0	NM_001177673	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94904804-4	chr10	94904299	94905299	+	894.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 4 of 30)	intron (NM_018797, intron 4 of 30)	39779.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-33813361-4	chr1	33812867	33813867	+	894.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359274, intron 2 of 13)	intron (NM_001359274, intron 2 of 13)	1228.0	NM_133817	98403.0	Mm.289103	NM_133817	ENSMUSG00000042197	Zfp451	4930515K21Rik|4933435G09Rik|AI596398|COASTER|Kiaa0576-hp|Znf451|mKIAA1702	zinc finger protein 451	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-30755251-4	chr10	30754677	30755677	+	894.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 2 of 14)	intron (NM_001358842, intron 2 of 14)	48149.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	3.5	8.5	4.0	5.0	5.0	7.5
Merged-chr3-108164919-4	chr3	108164415	108165415	+	894.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9983.0	NM_001305461	229714.0	Mm.73666	NM_175470	ENSMUSG00000046793	Gpr61	-	G protein-coupled receptor 61	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32770095-3	chr19	32769597	32770597	+	894.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 1 of 8)	intron (NM_008960, intron 1 of 8)	12520.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	14.5	11.5	33.0	12.5	15.0	16.0
Merged-chr4-97773798-2	chr4	97773298	97774298	+	894.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-3828.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140768532-4	chr5	140768040	140769040	+	894.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 2 of 3)	intron (NM_010302, intron 2 of 3)	44413.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19278023-2	chr7	19277523	19278523	+	894.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_177691, intron 3 of 4)	intron (NM_177691, intron 3 of 4)	2026.0	NM_177691	232941.0	Mm.134068	NM_177691	ENSMUSG00000030402	Ppm1n	A930002H20|C79127	protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12734717-4	chr18	12734190	12735190	+	894.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028341, intron 11 of 13)	intron (NM_028341, intron 11 of 13)	-6665.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115473514-2	chr5	115473014	115474014	+	894.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_151517, intron 2 of 2)	B2_Mm2|SINE|B2	7372.0	NM_001356587	18778.0	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0.0	0.0	0.0	0.0	0.5	0.5
Merged-chr15-101221075-2	chr15	101220595	101221595	+	894.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045996)	promoter-TSS (NR_045996)	-152.0	NR_045996	105968.0	Mm.120798	NR_045996	ENSMUSG00000115944	AU021063	-	expressed sequence AU021063	ncRNA	0.0	0.5	0.0	0.0	1.5	0.0
Merged-chr15-102349311-2	chr15	102348811	102349811	+	894.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_153416, intron 2 of 15)	intron (NM_153416, intron 2 of 15)	1448.0	NM_153416	223921.0	Mm.352946	NM_153416	ENSMUSG00000036678	Aaas	AAA|ADRACALA|D030041N15Rik|GL003	achalasia, adrenocortical insufficiency, alacrimia	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66279497-4	chr15	66279007	66280007	+	894.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152923, intron 1 of 14)	intron (NM_152923, intron 1 of 14)	6717.0	NM_152923	110862.0	Mm.255585	NM_152923	ENSMUSG00000056258	Kcnq3	-	potassium voltage-gated channel, subfamily Q, member 3	protein-coding	9.5	2.0	0.5	4.5	0.0	0.5
Merged-chr2-73487082-4	chr2	73486577	73487577	+	894.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-1324.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29975907-4	chr17	29975415	29976415	+	894.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29124.0	NM_148926	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	4.0	8.5	1.5	3.0	3.0	0.0
Merged-chr2-73372172-3	chr2	73371667	73372667	+	894.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276444, intron 4 of 15)	intron (NM_001276444, intron 4 of 15)	14313.0	NM_001276443	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38500232-3	chr6	38499722	38500722	+	894.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177185, intron 16 of 16)	intron (NM_177185, intron 16 of 16)	-7103.0	NR_106130	102466843.0		NR_106130	ENSMUSG00000098285	Mir7670	Gm27707|mmu-mir-7670	microRNA 7670	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21129772-4	chr5	21129284	21130284	+	894.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46495.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147574709-4	chr5	147574221	147575221	+	894.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010228, intron 25 of 29)	intron (NM_010228, intron 25 of 29)	144565.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	5.5	8.5	2.5	0.0	5.0	7.5
Merged-chr9-70367151-4	chr9	70366674	70367674	+	894.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 19 of 27)	intron (NM_181072, intron 19 of 27)	38579.0	NR_049200	100885839.0		NR_049200	ENSMUSG00000093763	Mir5626	Gm25590|mir-5626|mmu-mir-5626	microRNA 5626	ncRNA	6.5	0.0	5.5	11.0	11.5	17.5
Merged-chr3-65380736-4	chr3	65380232	65381232	+	894.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026155, exon 5 of 5)	3' UTR (NM_026155, exon 5 of 5)	11821.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71368453-4	chr2	71367943	71368943	+	894.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172436)	promoter-TSS (NM_172436)	-889.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182376365-3	chr1	182375862	182376862	+	894.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32805.0	NM_173378	209456.0	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-26582345-6	chr16	26581858	26582858	+	894.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152416, intron 1 of 12)	intron (NR_152416, intron 1 of 12)	653.0	NM_008364	16180.0	Mm.253424	NM_008364	ENSMUSG00000022514	Il1rap	6430709H04Rik|AI255955|AV239853|IL-1RAcP	interleukin 1 receptor accessory protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-115368528-3	chr2	115368013	115369013	+	894.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24233.0	NR_040516	78193.0	Mm.189508	NR_040516	ENSMUSG00000087309	4930528P14Rik	-	RIKEN cDNA 4930528P14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88254764-2	chr3	88254264	88255264	+	894.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021375)	promoter-TSS (NM_021375)	-80.0	NM_021375	58176.0	Mm.103777	NM_021375	ENSMUSG00000104445	Rhbg	-	Rhesus blood group-associated B glycoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100517921-4	chr13	100517441	100518441	+	894.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360539, intron 2 of 6)	intron (NM_001360539, intron 2 of 6)	-25332.0	NM_022011	23894.0	Mm.272533	NM_022011	ENSMUSG00000021639	Gtf2h2	44kDa|BTF2 p44|BTF2-p44|Btf2p44|p44	general transcription factor II H, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98568544-2	chr15	98568044	98569044	+	894.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009833)	promoter-TSS (NM_009833)	-908.0	NM_009833	12455.0	Mm.29941	NM_009833	ENSMUSG00000011960	Ccnt1	2810478G24Rik|AI115585|CycT1	cyclin T1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-86479274-4	chr9	86478755	86479755	+	894.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177208, intron 1 of 38)	intron (NM_177208, intron 1 of 38)	12101.0	NM_177208	320615.0	Mm.245500	NM_177208	ENSMUSG00000034973	Dopey1	B130005I07Rik|BC035275|C130028L17|D9Ertd809e	dopey family member 1	protein-coding	0.0	8.0	1.0	0.0	7.5	1.0
Merged-chr4-148742863-4	chr4	148742377	148743377	+	894.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-61515.0	NM_001159344	69743.0	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	0.0	0.0	0.0	4.0	0.0	0.0
Merged-chr11-76884722-3	chr11	76884223	76885223	+	894.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21B|LTR|ERVL	-19822.0	NM_025655	66601.0	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113418791-3	chr6	113418337	113419337	+	894.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001346511, exon 2 of 9)	exon (NM_001346511, exon 2 of 9)	503.0	NM_001033204	101122.0	Mm.31204	NM_001033204	ENSMUSG00000051169	Rpusd3	AI527266	RNA pseudouridylate synthase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80603770-2	chr10	80603270	80604270	+	894.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019575, intron 1 of 6)	intron (NM_019575, intron 1 of 6)	888.0	NM_019575	56214.0	Mm.273170	NM_019575	ENSMUSG00000113949	Scamp4	2410022D05Rik|AI448940|AU022392|AW742369|Sc4	secretory carrier membrane protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43290045-3	chr5	43289572	43290572	+	894.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175937)	TTS (NM_175937)	-54718.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127322745-4	chr2	127322258	127323258	+	894.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13401.0	NM_010090	13537.0	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164083807-4	chr2	164083308	164084308	+	894.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021420, intron 3 of 10)	intron (NM_021420, intron 3 of 10)	9630.0	NM_021420	58231.0	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61638977-4	chr11	61638476	61639476	+	894.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER76|LTR|ERVL	-14345.0	NM_027817	71520.0	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-23399775-4	chr1	23399254	23400254	+	894.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME2|LINE|L1	-16579.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-156234850-4	chr4	156234392	156235392	+	894.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198305)	promoter-TSS (NM_198305)	-35.0	NM_198305	231003.0	Mm.423038	NM_198305	ENSMUSG00000078485	Klhl17	AL022703|BC058738	kelch-like 17	protein-coding	0.0	9.0	14.5	0.0	5.5	14.5
Merged-chr8-104535635-5	chr8	104535171	104536171	+	894.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301164, intron 1 of 6)	intron (NM_001301164, intron 1 of 6)	971.0	NM_001301164	12354.0	Mm.129265	NM_053070	ENSMUSG00000031883	Car7	AV343731|Ca7	carbonic anhydrase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46453529-3	chr17	46453024	46454024	+	894.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162864, intron 13 of 14)	intron (NM_001162864, intron 13 of 14)	-15047.0	NM_144856	108114.0	Mm.387538	NM_144856	ENSMUSG00000067144	Slc22a7	NLT|OAT2	solute carrier family 22 (organic anion transporter), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135112839-3	chr1	135112315	135113315	+	894.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153383, intron 25 of 36)	intron (NR_153383, intron 25 of 36)	-7539.0	NM_001033409	329252.0	Mm.279594	NM_001033409	ENSMUSG00000042793	Lgr6	A530037C04Rik|D830026M09	leucine-rich repeat-containing G protein-coupled receptor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73675627-4	chr15	73675113	73676113	+	894.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31892.0	NM_173365	239530.0	Mm.122997	NM_173365	ENSMUSG00000045281	Gpr20	A430106B11Rik	G protein-coupled receptor 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35327500-4	chr2	35326995	35327995	+	894.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013515, intron 1 of 6)	intron (NM_013515, intron 1 of 6)	9514.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106151951-4	chr1	106151453	106152453	+	894.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040630)	TTS (NR_040630)	19571.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-13360855-4	chr1	13360361	13361361	+	894.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	RLTR12BD_Mm|LTR|ERVK	11568.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	9.5	21.5	10.5	4.0	3.0	8.0
Merged-chr16-38800310-2	chr16	38799846	38800846	+	894.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178924)	promoter-TSS (NM_178924)	-143.0	NM_178924	22268.0	Mm.130793	NM_178924	ENSMUSG00000049436	Upk1b	AI413235|Tspan20|UPIb|Upk1	uroplakin 1B	protein-coding	5.0	3.5	2.0	2.5	14.0	5.0
Merged-chr18-14706440-2	chr18	14705940	14706940	+	894.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360823, intron 1 of 5)	intron (NM_001360823, intron 1 of 5)	289.0	NM_001360823	73677.0	Mm.87277	NM_001163609	ENSMUSG00000036743	Psma8	2410072D24Rik	proteasome (prosome, macropain) subunit, alpha type, 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53235450-1	chr15	53234950	53235950	+	894.0	f0_balb.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	110733.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78477392-3	chr9	78476922	78477922	+	894.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4302.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65829651-2	chr9	65829151	65830151	+	894.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019797, exon 16 of 16)	3' UTR (NM_019797, exon 16 of 16)	-2087.0	NM_172536	214812.0	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102519412-2	chr15	102518912	102519912	+	894.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009319, intron 2 of 8)	intron (NM_009319, intron 2 of 8)	1220.0	NM_009319	21357.0	Mm.291485	NM_009319	ENSMUSG00000023051	Tarbp2	Prbp|TRBP	TARBP2, RISC loading complex RNA binding subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31068706-2	chr6	31068206	31069206	+	894.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-5613.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57927923-2	chr9	57927423	57928423	+	894.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027086, intron 10 of 10)	Lx8|LINE|L1	-12212.0	NM_011352	20361.0	Mm.335187	NM_011352	ENSMUSG00000038264	Sema7a	2900057C09Rik|CDw108|H-Sema-L|M-Sema-L|Semal	sema domain, immunoglobulin domain (Ig), and GPI membrane anchor, (semaphorin) 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91033433-2	chr1	91032933	91033933	+	894.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-20011.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-15790284-3	chr6	15789760	15790760	+	894.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 4 of 4)	intron (NM_175088, intron 4 of 4)	69599.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-109563066-3	chr5	109562577	109563577	+	894.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	-4084.0	NM_001310694	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	0.5	5.0	3.5	0.0	8.0	0.5
Merged-chr10-93365478-4	chr10	93364982	93365982	+	894.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29271.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	1.0	12.0	26.0	89.5	190.5	125.5
Merged-chr2-48350421-4	chr2	48349930	48350930	+	894.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-463679.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95832343-2	chr16	95831843	95832843	+	894.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040485, exon 4 of 4)	non-coding (NR_040485, exon 4 of 4)	66370.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118051677-1	chr10	118051177	118052177	+	894.0	f1_c57bl6.idr	Intergenic	L1ME4b|LINE|L1	-90110.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	56.0	205.0	138.0	87.0	151.0	166.0
Merged-chr10-75838701-2	chr10	75838201	75839201	+	894.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-3820.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40096022-3	chr10	40095534	40096534	+	894.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	46220.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129355731-1	chr2	129355231	129356231	+	894.0	f1_balb.idr	Intergenic	L1Md_F2|LINE|L1	-14171.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	5.5	13.0	0.5	2.0	18.5	11.0
Merged-chr15-80012831-4	chr15	80012324	80013324	+	894.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011057, intron 1 of 6)	CpG	1984.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	7.5	9.5	26.5	1.5	29.0	20.5
Merged-chr4-130861845-4	chr4	130861359	130862359	+	894.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-51475.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13758115-3	chr8	13757608	13758608	+	894.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357247, intron 1 of 16)	intron (NM_001357247, intron 1 of 16)	452.0	NM_001357247	69957.0	Mm.182412	NM_027276	ENSMUSG00000038416	Cdc16	2700071J12Rik|2810431D22Rik|APC6	CDC16 cell division cycle 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20638966-2	chr11	20638466	20639466	+	894.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038625, intron 1 of 1)	intron (NM_001038625, intron 1 of 1)	6989.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	2.5	0.0	0.5	0.0	2.5	0.0
Merged-chr19-32663295-2	chr19	32662795	32663795	+	894.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011864, exon 11 of 13)	exon (NM_011864, exon 11 of 13)	43290.0	NM_011864	23972.0	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116396804-2	chr11	116396304	116397304	+	894.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027258, intron 1 of 18)	B4|SINE|B4	16228.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53677029-2	chr19	53676529	53677529	+	894.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170847)	promoter-TSS (NM_001170847)	-277.0	NM_001170847	73713.0	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-105132344-1	chr9	105131844	105132844	+	894.0	f1_balb.idr	promoter-TSS (NM_029385)	promoter-TSS (NM_029385)	-539.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	40.5	90.0	63.0	78.5	164.0	84.0
Merged-chr6-149409547-2	chr6	149409047	149410047	+	894.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009753, exon 1 of 9)	exon (NM_009753, exon 1 of 9)	563.0	NM_009753	12121.0	Mm.177181	NM_009753	ENSMUSG00000003452	Bicd1	B830009D06Rik|bic-D 1	BICD cargo adaptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32728956-1	chr5	32728456	32729456	+	894.0	f0_balb.idr	Intergenic	Intergenic	17386.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117988178-2	chr11	117987678	117988678	+	894.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151726, intron 1 of 9)	intron (NR_151726, intron 1 of 9)	1321.0	NR_151726	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77629734-2	chr11	77629234	77630234	+	894.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21919.0	NM_144825	216965.0	Mm.340436	NM_144825	ENSMUSG00000017291	Taok1	2810468K05Rik|AU020252|D130018F14Rik|Map3k16|Markk|Psk2|mKIAA1361	TAO kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73821711-2	chr13	73821211	73822211	+	894.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347535, intron 8 of 8)	intron (NM_001347535, intron 8 of 8)	25920.0	NM_028186	72293.0	Mm.45506	NM_028186	ENSMUSG00000021567	Nkd2	2210403L10Rik|AW212591|mNkd2	naked cuticle 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112317559-2	chr5	112317059	112318059	+	894.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8810.0	NM_018783	54723.0	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30686722-4	chr16	30686271	30687271	+	894.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	87048.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0.0	11.5	12.0	6.0	5.0	8.5
Merged-chr7-116447859-2	chr7	116447359	116448359	+	894.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-4401.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-149337356-2	chr3	149336856	149337856	+	894.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31D_MM|LTR|ERVK	62619.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126883391-2	chr8	126882891	126883891	+	894.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	34371.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107672812-2	chr11	107672312	107673312	+	894.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_198298, exon 30 of 32)	exon (NM_198298, exon 30 of 32)	35090.0	NR_105897	102465562.0		NR_105897	ENSMUSG00000098497	Mir6932	Gm27691|mmu-mir-6932	microRNA 6932	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91743060-2	chr6	91742560	91743560	+	894.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 9 of 14)	intron (NM_009320, intron 9 of 14)	58993.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-48048738-6	chr6	48048301	48049301	+	893.9722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081382)	promoter-TSS (NM_001081382)	-687.0	NM_001081382	72306.0	Mm.381553	NM_001081382	ENSMUSG00000071477	Zfp777	2500002G23Rik	zinc finger protein 777	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75774727-4	chr7	75774225	75775225	+	893.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-73613.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-83585509-4	chr13	83585000	83586000	+	893.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347576, intron 2 of 10)	intron (NM_001347576, intron 2 of 10)	11893.0	NM_001347569	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0.0	0.0	0.0	2.0	0.0	1.0
Merged-chr2-35475086-4	chr2	35474576	35475576	+	893.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-13627.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64388911-3	chr7	64388414	64389414	+	893.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026483, exon 3 of 11)	exon (NM_026483, exon 3 of 11)	3322.0	NM_026483	67973.0	Mm.26973	NM_026483	ENSMUSG00000030521	Mphosph10	2810453H10Rik|5730405D16Rik|AI326008	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	protein-coding	11.5	24.0	13.5	10.0	34.0	15.5
Merged-chr17-34899632-12	chr17	34899053	34900053	+	893.930542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001286573, exon 2 of 26)	exon (NM_001286573, exon 2 of 26)	579.0	NM_145830	110147.0	Mm.35345	NM_145830	ENSMUSG00000013787	Ehmt2	Bat8|D17Ertd710e|G9a|KMT1C|NG36	euchromatic histone lysine N-methyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8989322-3	chr19	8988811	8989811	+	893.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286518)	promoter-TSS (NM_001286518)	27.0	NM_001286518	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr8-120116292-4	chr8	120115818	120116818	+	893.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172286, intron 1 of 12)	intron (NM_172286, intron 1 of 12)	2166.0	NM_001163761	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-83722061-4	chr2	83721553	83722553	+	893.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2344.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	12.5	11.0	6.0	13.5	24.5	11.0
Merged-chr7-127278433-4	chr7	127277851	127278851	+	893.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4292.0	NM_009266	20768.0	Mm.20294	NM_009266	ENSMUSG00000049091	Sephs2	Sps2|Ysg3	selenophosphate synthetase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43283380-4	chr7	43282859	43283859	+	893.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29941.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-117479911-4	chr12	117479452	117480452	+	893.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36527.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	9.0	13.0	21.5	9.0	13.0	20.5
Merged-chr6-146668825-4	chr6	146668383	146669383	+	893.875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	11665.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	13.0	23.5	8.0	10.0	8.5	8.0
Merged-chr17-6961766-4	chr17	6961260	6962260	+	893.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_147155)	promoter-TSS (NM_147155)	-604.0	NM_147155	380608.0	Mm.371734	NM_147155	ENSMUSG00000052031	Tagap1	2610315E15Rik|AA415005|FKSG15	T cell activation GTPase activating protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55789659-4	chr16	55789127	55790127	+	893.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32511.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-10668338-3	chr8	10667826	10668826	+	893.861145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	214128.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105826646-6	chr8	105826184	105827184	+	893.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145824, intron 1 of 13)	intron (NM_145824, intron 1 of 13)	666.0	NM_145824	74334.0	Mm.4206	NM_145824	ENSMUSG00000037415	Ranbp10	4432417N03Rik	RAN binding protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100866307-7	chr13	100865748	100866748	+	893.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32821.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41572175-4	chr13	41571684	41572684	+	893.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34032.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49108627-4	chr13	49108115	49109115	+	893.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290313, intron 2 of 29)	intron (NM_001290313, intron 2 of 29)	39713.0	NM_029361	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-55935309-4	chr7	55934791	55935791	+	893.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256131, intron 5 of 5)	intron (NM_001256131, intron 5 of 5)	27202.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	4.5	12.0	2.5	4.5	12.0	2.0
Merged-chr10-17726402-2	chr10	17725902	17726902	+	893.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010828)	TTS (NM_010828)	3174.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44147523-2	chr9	44147023	44148023	+	893.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12865.0	NM_001359530	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158208007-3	chr2	158207503	158208503	+	893.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001131021, intron 8 of 15)	intron (NM_001131021, intron 8 of 15)	15995.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132311671-4	chr1	132311163	132312163	+	893.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4462.0	NM_001195025	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111428312-2	chr12	111427812	111428812	+	893.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289487, intron 10 of 13)	intron (NM_001289487, intron 10 of 13)	10867.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-43409328-4	chr16	43408835	43409835	+	893.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	10861.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-65373518-3	chr7	65373027	65374027	+	893.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2283.0	NM_009386	21872.0	Mm.4342	NM_009386	ENSMUSG00000030516	Tjp1	ZO1	tight junction protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-98129033-3	chr3	98128535	98129535	+	893.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 22 of 33)	intron (NM_010928, intron 22 of 33)	-31599.0	NM_027665	71078.0	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-73651089-5	chr5	73650576	73651576	+	893.81665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178387)	promoter-TSS (NM_178387)	-304.0	NM_178387	73472.0	Mm.87067	NM_178387	ENSMUSG00000029155	Spata18	1700067I02Rik	spermatogenesis associated 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115759718-4	chr6	115759222	115760222	+	893.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144805)	promoter-TSS (NM_144805)	-723.0	NM_144805	94346.0	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-7878242-4	chr15	7877739	7878739	+	893.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081402, intron 17 of 17)	intron (NM_001081402, intron 17 of 17)	62689.0	NM_001301357	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-129021038-6	chr5	129020598	129021598	+	893.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009391, intron 4 of 6)	intron (NM_009391, intron 4 of 6)	942.0	NM_009391	19384.0	Mm.297440	NM_009391	ENSMUSG00000029430	Ran	-	RAN, member RAS oncogene family	protein-coding	12.5	77.5	63.5	15.5	86.0	59.5
Merged-chr16-31930961-2	chr16	31930461	31931461	+	893.8000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-2890.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29470144-4	chr19	29469629	29470629	+	893.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	intron (NM_021396, intron 5 of 5)	51858.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-131540292-2	chr7	131539792	131540792	+	893.7999880000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2671.0	NM_008257	15373.0	Mm.323562	NM_008257	ENSMUSG00000040148	Hmx3	Nkx-5.1|Nkx5-1|Nkx5.1	H6 homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108843141-4	chr9	108842644	108843644	+	893.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001359573, exon 25 of 36)	exon (NM_001359573, exon 25 of 36)	-10899.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11481296-4	chr4	11480801	11481801	+	893.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4657.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3247495-4	chr5	3246977	3247977	+	893.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96416.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191241769-4	chr1	191241282	191242282	+	893.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17328.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76482842-4	chr11	76482379	76483379	+	893.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 2 of 21)	intron (NM_001346670, intron 2 of 21)	11616.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	109.0	268.5	205.5	139.0	360.5	247.0
Merged-chr7-112238013-3	chr7	112237499	112238499	+	893.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001193305, intron 2 of 25)	intron (NM_001193305, intron 2 of 25)	12163.0	NM_001193305	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	0.0	0.0	0.0	2.0	0.0	3.0
Merged-chr12-55820415-3	chr12	55819896	55820896	+	893.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003719, intron 1 of 39)	intron (NM_001003719, intron 1 of 39)	1120.0	NM_019994	56784.0	Mm.292180	NM_019994	ENSMUSG00000021027	Ralgapa1	2310003F20Rik|4930400K19Rik|AI563624|GRIPE|Garnl1|Tulip1|mKIAA0884	Ral GTPase activating protein, alpha subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-14054435-3	chr10	14053934	14054934	+	893.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	88055.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	4.5	16.5	10.5	9.5	13.5	7.5
Merged-chr13-107700431-4	chr13	107699918	107700918	+	893.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13021.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr1-167220637-4	chr1	167220106	167221106	+	893.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64521.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38343634-3	chr18	38343138	38344138	+	893.7666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4645.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-92455908-4	chr2	92455358	92456358	+	893.758301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_211358, intron 1 of 1)	intron (NM_211358, intron 1 of 1)	3936.0	NM_211358	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108850930-2	chr9	108850430	108851430	+	893.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359572, intron 35 of 35)	intron (NM_001359572, intron 35 of 35)	-3113.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-38837332-4	chr19	38836806	38837806	+	893.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001362424, exon 1 of 11)	exon (NM_001362424, exon 1 of 11)	727.0	NM_001362424	209478.0	Mm.391153	NM_145952	ENSMUSG00000048720	Tbc1d12	BC033574	TBC1D12: TBC1 domain family, member 12	protein-coding	2.0	3.5	0.5	2.5	12.0	4.5
Merged-chr4-141665457-2	chr4	141665081	141666081	+	893.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1466.0	NM_001033150	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	3.0	11.0	9.5	1.0	14.0	4.5
Merged-chr6-88379040-4	chr6	88378538	88379538	+	893.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023060, intron 1 of 6)	intron (NM_023060, intron 1 of 6)	67501.0	NM_023060	65967.0	Mm.333237	NM_023060	ENSMUSG00000033216	Eefsec	Selb|mSelB|sec	eukaryotic elongation factor, selenocysteine-tRNA-specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135494449-4	chr5	135493963	135494963	+	893.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	50659.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-66219936-4	chr17	66219486	66220486	+	893.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96466.0	NM_001348292	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117962882-5	chr2	117962345	117963345	+	893.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	MTD|LTR|ERVL-MaLR	140917.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	63.5	133.0	109.0	75.0	140.5	94.0
Merged-chr13-34277883-4	chr13	34277412	34278412	+	893.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	67270.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120115717-2	chr9	120115231	120116231	+	893.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_144793, intron 1 of 6)	intron (NM_144793, intron 1 of 6)	5332.0	NM_144793	208638.0	Mm.236656	NM_144793	ENSMUSG00000032519	Slc25a38	AV019094|BC010801|appoptosin	solute carrier family 25, member 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123189089-3	chr8	123188668	123189668	+	893.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007876, intron 1 of 10)	intron (NM_007876, intron 1 of 10)	2933.0	NM_007876	13479.0	Mm.20388	NM_007876	ENSMUSG00000019278	Dpep1	AI327012|MBD	dipeptidase 1 (renal)	protein-coding	11.0	19.5	19.0	5.0	8.0	13.5
Merged-chr11-107865222-2	chr11	107864658	107865658	+	893.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46204.0	NM_080644	140723.0	Mm.87663	NM_080644	ENSMUSG00000040373	Cacng5	-	calcium channel, voltage-dependent, gamma subunit 5	protein-coding	0.0	0.0	1.0	0.0	0.0	3.0
Merged-chr5-147437567-3	chr5	147437101	147438101	+	893.744446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028291, intron 1 of 18)	intron (NM_028291, intron 1 of 18)	7445.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	21.0	3.5	11.5	23.5	44.0	29.5
Merged-chr2-104595174-3	chr2	104594656	104595656	+	893.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037326, intron 1 of 1)	intron (NM_001037326, intron 1 of 1)	4672.0	NM_001037326	228410.0	Mm.259876	NM_145529	ENSMUSG00000027176	Cstf3	4732468G05Rik|C79532|CstF-77	cleavage stimulation factor, 3' pre-RNA, subunit 3	protein-coding	4.5	2.5	1.0	4.5	2.5	1.0
Merged-chr15-38709697-4	chr15	38709235	38710235	+	893.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18781.0	NR_131206	105463124.0	Mm.432448	NR_131206	ENSMUSG00000115620	Gm45924	Borg	predicted gene, 45924	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70714398-7	chr12	70713876	70714876	+	893.7261960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111138.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117787172-3	chr4	117786696	117787696	+	893.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21530.0	NM_029416	75753.0	Mm.3848	NM_029416	ENSMUSG00000048626	Klf17	7420700M05Rik|AA420409|AU043468|C85123|D4Ertd561e|Gzf|Zfp393	Kruppel-like factor 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr8-85456708-3	chr8	85456216	85457216	+	893.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23875.0	NM_025722	66714.0	Mm.272748	NM_025722	ENSMUSG00000036934	4921524J17Rik	-	RIKEN cDNA 4921524J17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101717779-4	chr4	101717254	101718254	+	893.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001122899, exon 1 of 19)	5' UTR (NM_001122899, exon 1 of 19)	347.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	13.5	24.5	13.5	2.0	6.5	9.0
Merged-chr7-113556391-4	chr7	113555878	113556878	+	893.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126544, intron 1 of 5)	intron (NR_126544, intron 1 of 5)	8609.0	NR_126544	69295.0	Mm.396150	NR_126544	ENSMUSG00000084984	Far1os	1700006P19Rik	fatty acyl CoA reductase 1, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-33205613-4	chr14	33205091	33206091	+	893.70343	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11232.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86337284-4	chr17	86336820	86337820	+	893.695801	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	-50142.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	0.0	5.5	0.5	0.0	0.0	0.0
Merged-chr7-78864602-4	chr7	78864111	78865111	+	893.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17400.0	NM_029585	76375.0	Mm.250541	NM_029585	ENSMUSG00000030610	Det1	2610034H20Rik	de-etiolated homolog 1 (Arabidopsis)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86770024-4	chr17	86769448	86770448	+	893.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010137, intron 1 of 15)	intron (NM_010137, intron 1 of 15)	16084.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.0	5.0	8.5	0.0	3.0	7.0
Merged-chr4-145239444-4	chr4	145238923	145239923	+	893.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	7447.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6982547-3	chr17	6982032	6983032	+	893.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026611, intron 2 of 8).2	intron (NM_026611, intron 2 of 8).2	3672.0	NM_026611	68195.0	Mm.181237	NM_026611	ENSMUSG00000094724	Rnaset2b	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115186527-3	chr11	115185988	115186988	+	893.6666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033393)	promoter-TSS (NM_001033393)	828.0	NM_025400	66176.0	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	37.5	128.0	102.0	11.5	42.0	46.5
Merged-chr5-108269438-3	chr5	108268928	108269928	+	893.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026106, exon 1 of 3)	5' UTR (NM_026106, exon 1 of 3)	531.0	NM_026106	13486.0	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-84058792-3	chr6	84058296	84059296	+	893.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 4 of 54)	intron (NM_001077694, intron 4 of 54)	39410.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-5664058-3	chr5	5663548	5664548	+	893.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001103156)	TTS (NM_001103156)	184.0	NM_172447	207686.0	Mm.319007	NM_172447	ENSMUSG00000040473	Cfap69	4921525K03|A330021E22Rik|AI427898	cilia and flagella associated protein 69	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-172441384-4	chr2	172440874	172441874	+	893.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025542, intron 1 of 8)	intron (NM_025542, intron 1 of 8)	796.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95232538-4	chr3	95232058	95233058	+	893.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172395, exon 3 of 5)	exon (NM_172395, exon 3 of 5)	3615.0	NM_001038708	57912.0	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29208539-3	chr6	29208064	29209064	+	893.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302934, intron 3 of 14)	intron (NM_001302934, intron 3 of 14)	3733.0	NM_011829	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75833082-3	chr14	75832576	75833576	+	893.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11888.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-6633658-4	chr13	6633172	6634172	+	893.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019703, intron 2 of 21)	intron (NM_019703, intron 2 of 21)	15099.0	NM_019703	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-58466668-3	chr4	58466158	58467158	+	893.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172989, intron 3 of 3)	intron (NM_172989, intron 3 of 3)	-25560.0	NR_037278	100526502.0		NR_037278	ENSMUSG00000093293	Mir3095	mir-3095|mmu-mir-3095	microRNA 3095	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120185167-2	chr6	120184667	120185667	+	893.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	B1F1|SINE|Alu	-8656.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19276447-2	chr7	19275947	19276947	+	893.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177691)	TTS (NM_177691)	3602.0	NM_177691	232941.0	Mm.134068	NM_177691	ENSMUSG00000030402	Ppm1n	A930002H20|C79127	protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative)	protein-coding	1.5	16.5	4.5	1.5	13.5	4.5
Merged-chr5-129942588-7	chr5	129942115	129943115	+	893.654785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001327, intron 1 of 1)	CpG	506.0	NM_027121	69568.0	Mm.288718	NM_027121	ENSMUSG00000066735	Vkorc1l1	2310024K08Rik	vitamin K epoxide reductase complex, subunit 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130697543-5	chr2	130696981	130697981	+	893.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081162)	promoter-TSS (NM_001081162)	38.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	0.0	5.5	0.0	0.0	6.5	2.5
Merged-chr6-8508530-4	chr6	8508012	8509012	+	893.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040452, exon 2 of 2)	non-coding (NR_040452, exon 2 of 2)	649.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-53594835-4	chr17	53594364	53595364	+	893.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190846, intron 1 of 17)	C-rich|Low_complexity|Low_complexity	10738.0	NM_001190846	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	10.5	6.5	16.5	3.5	10.5	10.0
Merged-chr8-83722055-3	chr8	83721715	83722715	+	893.625	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197982, intron 6 of 10)	intron (NM_197982, intron 6 of 10)	1769.0	NR_106188	102465897.0		NR_106188	ENSMUSG00000098465	Mir1668	Gm27590|mmu-mir-1668	microRNA 1668	ncRNA	2.5	8.5	1.0	2.0	3.0	6.0
Merged-chr10-80624409-2	chr10	80623909	80624909	+	893.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_134002, intron 1 of 10)	intron (NM_134002, intron 1 of 10)	1629.0	NM_134002	103236.0	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8000150-3	chr10	7999668	8000668	+	893.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-44045.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88722951-2	chr10	88722451	88723451	+	893.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	8150.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-66383715-2	chr8	66383215	66384215	+	893.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 4 of 7)	intron (NM_175188, intron 4 of 7)	-2586.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36697802-3	chr16	36697304	36698304	+	893.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 1 of 7)	intron (NM_001285788, intron 1 of 7)	3826.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87246027-4	chr17	87245534	87246534	+	893.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19913.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	37.5	95.5	71.5	50.5	115.0	83.0
Merged-chr1-131990621-4	chr1	131990128	131991128	+	893.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16977.0	NM_007923	13714.0	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116191579-4	chr3	116191066	116192066	+	893.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61878.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58882496-4	chr15	58882006	58883006	+	893.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-6723.0	NM_175226	75841.0	Mm.4537	NM_175226	ENSMUSG00000037075	Rnf139	4930555P18Rik	ring finger protein 139	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151074596-4	chr1	151074074	151075074	+	893.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63460.0	NR_038011	402734.0	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-83652942-4	chr9	83652438	83653438	+	893.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38537.0	NR_046066	100039222.0	Mm.405596	NR_046066	ENSMUSG00000100155	Gm2109	-	predicted gene 2109	ncRNA	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr2-26055241-4	chr2	26054710	26055710	+	893.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026495)	TTS (NM_026495)	-33450.0	NM_133835	98766.0	Mm.247824	NM_133835	ENSMUSG00000036352	Ubac1	1110033G07Rik|AA407978|GBDR1|Gdbr1|Kpc2|Ubadc1	ubiquitin associated domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129585242-6	chr4	129584710	129585710	+	893.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6630.0	NM_182783	230766.0	Mm.20377	NM_182783	ENSMUSG00000050493	Fam167b	SEC	family with sequence similarity 167, member B	protein-coding	52.0	65.5	38.0	4.0	6.0	7.5
Merged-chr7-64155971-4	chr7	64155473	64156473	+	893.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039104, intron 1 of 26)	intron (NM_001039104, intron 1 of 26)	2138.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9598211-4	chr3	9597708	9598708	+	893.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133218, intron 1 of 8)	intron (NM_133218, intron 1 of 8)	11877.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	1.5	0.0	0.5	1.5	0.0	0.5
Merged-chr11-29801958-4	chr11	29801445	29802445	+	893.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 21 of 41)	MLT1E1A|LTR|ERVL-MaLR	23723.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	10.0	11.5	16.5	23.5	13.0	13.0
Merged-chr5-24542863-4	chr5	24542343	24543343	+	893.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177676)	TTS (NM_177676)	-1865.0	NM_001310476	117590.0	Mm.207071	NM_080444	ENSMUSG00000038204	Asb10	Asb-10|BB137407	ankyrin repeat and SOCS box-containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45451050-2	chr9	45450550	45451550	+	893.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-19818.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	10.5	0.0	3.0	4.5	0.0	4.5
Merged-chr10-83095030-4	chr10	83094529	83095529	+	893.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021439, intron 2 of 2)	MIRb|SINE|MIR	109532.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26702710-2	chr8	26702210	26703210	+	893.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121713.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	6.0	8.0	4.0	1.0	1.0	1.0
Merged-chr2-151535645-2	chr2	151535145	151536145	+	893.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-6838.0	NR_126058	14225.0	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51580437-2	chr11	51579937	51580937	+	893.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153393, exon 29 of 29)	3' UTR (NM_153393, exon 29 of 29)	-4320.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103720402-2	chr14	103719902	103720902	+	893.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20970.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116733763-4	chr6	116733272	116734272	+	893.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17014.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62308585-4	chr4	62308092	62309092	+	893.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355385, intron 21 of 27)	B4A|SINE|B4	17045.0	NM_001290518	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16876535-2	chr7	16876035	16877035	+	893.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081655, intron 1 of 3)	intron (NM_001081655, intron 1 of 3)	1218.0	NM_001081655	629378.0	Mm.491123	NM_001081655	ENSMUSG00000078794	Dact3	EG666671|naa-3	dishevelled-binding antagonist of beta-catenin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80027798-2	chr7	80027298	80028298	+	893.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	1570.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63548699-4	chr4	63548194	63549194	+	893.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024173, intron 2 of 2)	intron (NM_024173, intron 2 of 2)	3929.0	NM_024173	66290.0	Mm.371615	NM_024173	ENSMUSG00000039105	Atp6v1g1	1810024D14Rik|AA960677|ATP6J|Atp6g1|VAG1|Vma10	ATPase, H+ transporting, lysosomal V1 subunit G1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-18993283-2	chr7	18992783	18993783	+	893.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145579, intron 2 of 2)	B1F|SINE|Alu	2038.0	NM_145579	232934.0	Mm.440069	NM_145579	ENSMUSG00000048481	Mypop	Myodysa|P42pop	Myb-related transcription factor, partner of profilin	protein-coding	0.0	5.0	0.0	0.0	0.0	0.0
Merged-chr17-55960952-2	chr17	55960452	55961452	+	893.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028381, intron 2 of 7)	intron (NM_028381, intron 2 of 7)	-1551.0	NR_108021	100504333.0	Mm.391908	NR_108021	ENSMUSG00000097077	Gm16712	-	predicted gene, 16712	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61332409-3	chr9	61331896	61332896	+	893.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38587.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-43259540-2	chr15	43259040	43260040	+	893.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008388, intron 10 of 12)	intron (NM_008388, intron 10 of 12)	23196.0	NM_008388	16341.0	Mm.289992	NM_008388	ENSMUSG00000022336	Eif3e	48kDa|Eif3s6|Int6|eIF3-p46|eIF3-p48	eukaryotic translation initiation factor 3, subunit E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155549011-3	chr4	155548506	155549506	+	893.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160016, intron 7 of 11)	intron (NM_001160016, intron 7 of 11)	-13375.0	NM_138671	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	3.0	1.0	2.0	6.0	2.5	6.5
Merged-chr5-101824330-2	chr5	101823830	101824830	+	893.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_173370)	TTS (NM_173370)	59200.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4875191-2	chr16	4874691	4875691	+	893.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145359, exon 3 of 3)	3' UTR (NM_145359, exon 3 of 3)	4660.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5837533-4	chr13	5837044	5838044	+	893.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	20548.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-85162972-4	chr16	85162465	85163465	+	893.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	MTEa|LTR|ERVL-MaLR	10742.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	18.5	14.5	22.5	27.5	21.5	34.0
Merged-chr12-3825203-3	chr12	3824686	3825686	+	893.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	UCON10|Unknown|Unknown	18026.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-83859551-2	chr12	83859051	83860051	+	893.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_073564, intron 2 of 12)	ORR1A2-int|LTR|ERVL-MaLR	-17193.0	NM_010949	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91970285-2	chr2	91969785	91970785	+	893.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6722.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	12.5	18.0	12.5	0.0	7.5	9.0
Merged-chr16-24594589-2	chr16	24594089	24595089	+	893.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 4 of 12)	intron (NM_178665, intron 4 of 12)	65275.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98806774-2	chr15	98806274	98807274	+	893.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001013741, exon 2 of 2)	exon (NM_001013741, exon 2 of 2)	1151.0	NM_001013741	13199.0	Mm.390810	NM_001013741	ENSMUSG00000059213	Ddn	Gm748	dendrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28759414-2	chr7	28758914	28759914	+	893.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001195091)	TTS (NM_001195091)	3240.0	NM_001195091	100504112.0	Mm.379654	NM_001195091	ENSMUSG00000096257	Ccer2	EG624918|Gm6537	coiled-coil glutamate-rich protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-122957593-3	chr9	122957078	122958078	+	893.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010620, intron 1 of 34)	MLTR14|LTR|ERV1	6497.0	NM_010620	209737.0	Mm.278920	NM_010620	ENSMUSG00000036768	Kif15	3110023M17Rik|3930402I10Rik|D330038N01|HKLP2|Knsl7|b2b1117.1Clo|b2b1117.1aClo	kinesin family member 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-5444940-4	chr16	5444451	5445451	+	893.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-188995.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-63431431-2	chr10	63430931	63431931	+	893.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177612, intron 1 of 17)	ORR1D1|LTR|ERVL-MaLR	1333.0	NM_177612	216033.0	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100628232-2	chr11	100627732	100628732	+	893.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028024)	TTS (NM_028024)	5277.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	0.0	0.0	1.0	0.0	4.0	0.0
Merged-chr10-87721055-2	chr10	87720581	87721581	+	893.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137184.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	2.5	9.5	9.5	6.5	5.5	5.5
Merged-chr18-42781692-3	chr18	42781191	42782191	+	893.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028392, intron 1 of 8)	intron (NM_028392, intron 1 of 8)	117815.0	NR_073583	72930.0	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65696143-2	chr5	65695643	65696643	+	893.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081321, intron 2 of 31)	intron (NM_001081321, intron 2 of 31)	1713.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95707173-6	chr16	95706635	95707635	+	893.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011809, intron 2 of 9)	intron (NM_011809, intron 2 of 9)	4728.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.0	0.0	0.0	10.5	23.0	13.5
Merged-chr13-23598157-3	chr13	23597643	23598643	+	893.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177653, intron 1 of 1)	intron (NM_001177653, intron 1 of 1)	-12173.0	NM_001290530	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-54898837-4	chr1	54898330	54899330	+	893.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	27557.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19343639-4	chr7	19343135	19344135	+	893.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1436.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0.0	12.0	4.0	7.5	12.5	6.0
Merged-chr1-150167371-4	chr1	150166874	150167874	+	893.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-2426.0	NR_110420	102639566.0	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38806912-6	chr6	38806446	38807446	+	893.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 2 of 14)	intron (NM_010433, intron 2 of 14)	30365.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-157285565-4	chr1	157285063	157286063	+	893.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177644, intron 3 of 17)	intron (NM_177644, intron 3 of 17)	-126789.0	NR_027984	69953.0	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-34456352-4	chr15	34455862	34456862	+	893.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173421, intron 1 of 2)	MTD|LTR|ERVL-MaLR	3050.0	NM_173421	239368.0	Mm.211977	NM_173421	ENSMUSG00000044726	Erich5	-	glutamate rich 5	protein-coding	0.0	0.0	2.5	0.5	2.0	10.0
Merged-chr8-95349206-4	chr8	95348700	95349700	+	893.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3096.0	NM_008609	17388.0	Mm.217116	NM_008609	ENSMUSG00000031790	Mmp15	AI503551|MT-MMP 2|MT2-MMP	matrix metallopeptidase 15	protein-coding	0.0	0.0	2.0	5.0	3.5	3.5
Merged-chr18-44812204-4	chr18	44811721	44812721	+	893.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085373)	promoter-TSS (NM_001085373)	-39.0	NM_001085373	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135286999-4	chr4	135286514	135287514	+	893.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14254.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39259379-4	chr6	39258855	39259855	+	893.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52582.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3770723-7	chr4	3770080	3771080	+	893.404785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	55616.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	17.0	34.5	13.5	2.0	29.0	31.0
Merged-chr12-72408620-3	chr12	72408131	72409131	+	893.400024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_153457, exon 1 of 9)	5' UTR (NM_153457, exon 1 of 9)	423.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	1.5	4.0	0.0	2.5	8.0	0.0
Merged-chr15-100666424-3	chr15	100665906	100666906	+	893.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270537, intron 1 of 10)	intron (NM_001270537, intron 1 of 10)	3094.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	26.0	33.5	31.5	23.5	36.0	31.5
Merged-chr3-51208902-4	chr3	51208400	51209400	+	893.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_B|LTR|ERVK	-15547.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-12957489-4	chr10	12956957	12957957	+	893.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029075, intron 1 of 2)	intron (NM_029075, intron 1 of 2)	6802.0	NM_029075	74732.0	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-4618401-4	chr13	4617890	4618890	+	893.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9226.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	2.5	1.0	12.5	4.5	2.5	11.0
Merged-chr4-53105320-2	chr4	53104820	53105820	+	893.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 7 of 49)	intron (NM_013454, intron 7 of 49)	54575.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148746944-4	chr5	148746459	148747459	+	893.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44D|LTR|ERVK	5119.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96867422-2	chr11	96866922	96867922	+	893.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17029.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	0.0	1.0	2.5	0.0	0.0	2.0
Merged-chr4-141300399-3	chr4	141299883	141300883	+	893.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010139)	promoter-TSS (NM_010139)	-838.0	NM_010139	13836.0	Mm.2581	NM_010139	ENSMUSG00000006445	Epha2	AW545284|Eck|Myk2|Sek-2|Sek2	Eph receptor A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86574108-2	chr11	86573608	86574608	+	893.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	10050.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67647370-4	chr10	67646839	67647839	+	893.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75380.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5433159-4	chr19	5432640	5433640	+	893.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7996.0	NM_001256515	107242.0	Mm.329658	NM_134149	ENSMUSG00000047423	AI837181	Bles03|N28173	expressed sequence AI837181	protein-coding	41.0	61.5	39.0	17.0	49.0	36.0
Merged-chr13-94106080-3	chr13	94105577	94106577	+	893.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 1 of 3)	intron (NM_172589, intron 1 of 3)	48281.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64287678-3	chr15	64287168	64288168	+	893.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	25005.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-8641563-3	chr13	8641061	8642061	+	893.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110345, intron 3 of 10)	intron (NR_110345, intron 3 of 10)	229483.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60389705-4	chr10	60389175	60390175	+	893.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 30 of 68)	intron (NM_001252635, intron 30 of 68)	-10051.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88139495-3	chr3	88139001	88140001	+	893.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2871.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38299160-3	chr6	38298653	38299653	+	893.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172467, exon 1 of 4)	exon (NM_172467, exon 1 of 4)	106.0	NM_172467	209032.0	Mm.101389	NM_172467	ENSMUSG00000047749	Zc3hav1l	B130055L09Rik|E430016P22Rik	zinc finger CCCH-type, antiviral 1-like	protein-coding	0.0	0.0	1.0	3.0	0.0	0.0
Merged-chr9-64829896-3	chr9	64829396	64830396	+	893.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162917, intron 2 of 34)	URR1B|DNA|hAT-Charlie	18885.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145866833-3	chr2	145866342	145867342	+	893.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 9 of 12)	intron (NM_028724, intron 9 of 12)	-36399.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	20.5	21.5	12.5	17.0	22.0	12.0
Merged-chr4-148151205-3	chr4	148150701	148151701	+	893.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_015797, exon 1 of 6)	5' UTR (NM_015797, exon 1 of 6)	724.0	NM_001163705	50762.0	Mm.27445	NM_015797	ENSMUSG00000055401	Fbxo6	AA408845|FBG2|Fbs2|Fbx6b|Fbxo6b	F-box protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72646588-3	chr8	72646079	72647079	+	893.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176940)	promoter-TSS (NM_176940)	-132.0	NM_176940	319555.0	Mm.390076	NM_176940	ENSMUSG00000048148	Nwd1	A230063L24Rik	NACHT and WD repeat domain containing 1	protein-coding	2.0	1.0	3.5	0.0	4.0	3.5
Merged-chr6-112490962-3	chr6	112490464	112491464	+	893.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1139.0	NM_001081147	18430.0	Mm.333310	NM_001081147	ENSMUSG00000049112	Oxtr	OTR	oxytocin receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67205949-3	chr18	67205437	67206437	+	893.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_024190, exon 1 of 1)	exon (NM_024190, exon 1 of 1)	578.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	29.5	71.0	94.5	70.0	159.5	123.0
Merged-chr7-66110025-4	chr7	66109516	66110516	+	893.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081163, exon 1 of 3)	exon (NM_001081163, exon 1 of 3)	501.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-30546942-4	chr6	30546449	30547449	+	893.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024698, intron 4 of 10)	intron (NM_001024698, intron 4 of 10)	5307.0	NM_001024698	232680.0	Mm.268855	NM_001024698	ENSMUSG00000071553	Cpa2	-	carboxypeptidase A2, pancreatic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83774994-3	chr6	83774486	83775486	+	893.288879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009357, intron 2 of 5)	intron (NM_009357, intron 2 of 5)	826.0	NM_009357	21766.0	Mm.28371	NM_009357	ENSMUSG00000014748	Tex261	3110001O07Rik|AA409339|AI480706|AL033351|TEG-261	testis expressed gene 261	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-53187375-3	chr5	53186877	53187877	+	893.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172710, intron 3 of 23)	UCON28b|Unknown|Unknown	26075.0	NM_172710	231238.0	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-96455529-3	chr13	96455029	96456029	+	893.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042714, intron 2 of 13)	intron (NM_001042714, intron 2 of 13)	15631.0	NM_001042714	271144.0	Mm.470057	NM_001042714	ENSMUSG00000047117	Ankdd1b	9330128J19Rik	ankyrin repeat and death domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8947862-4	chr12	8947389	8948389	+	893.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010770)	promoter-TSS (NM_010770)	-40.0	NM_010770	17182.0	Mm.42226	NM_010770	ENSMUSG00000020583	Matn3	AV009181	matrilin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-55037853-6	chr6	55037255	55038255	+	893.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_180678)	promoter-TSS (NM_180678)	-246.0	NM_180678	353172.0	Mm.250004	NM_180678	ENSMUSG00000029777	Gars	GENA202|Gena201|Nmf249|Sgrp23	glycyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-57951782-4	chr11	57951185	57952185	+	893.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57379.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	18.5	17.0	13.5	6.0	16.0	11.0
Merged-chr15-81564078-3	chr15	81563567	81564567	+	893.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22147.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	4.0	6.0	4.0	1.0	20.5	8.0
Merged-chr12-103339858-4	chr12	103339342	103340342	+	893.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 2 of 9)	intron (NM_023049, intron 2 of 9)	16159.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-77832581-4	chr14	77832063	77833063	+	893.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025384, intron 5 of 5)	RMER6B|LTR|ERVK	-33595.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	64.5	145.5	89.0	20.5	18.5	21.0
Merged-chr5-102074238-2	chr5	102073738	102074738	+	893.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4317.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-64698957-2	chr14	64698457	64699457	+	893.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081177, intron 2 of 39)	intron (NM_001081177, intron 2 of 39)	46426.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	2.0	9.5	7.5	2.0	8.5	7.0
Merged-chr15-63540416-4	chr15	63539933	63540933	+	893.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-60825.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	23.0	27.0	6.5	5.5	25.0	8.5
Merged-chr1-135094966-2	chr1	135094483	135095483	+	893.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033409, intron 1 of 17)	intron (NM_001033409, intron 1 of 17)	10293.0	NM_001033409	329252.0	Mm.279594	NM_001033409	ENSMUSG00000042793	Lgr6	A530037C04Rik|D830026M09	leucine-rich repeat-containing G protein-coupled receptor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-46767534-4	chr14	46767030	46768030	+	893.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360041, intron 5 of 7)	intron (NM_001360041, intron 5 of 7)	6989.0	NM_028222	72391.0	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding	33.5	30.0	29.5	36.5	84.0	72.5
Merged-chr3-96428132-2	chr3	96427632	96428632	+	893.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-13299.0	NR_001579	21748.0		NR_001579	ENSMUSG00000064796	Terc	mTER|mTR	telomerase RNA component	ncRNA	0.0	2.0	0.0	0.0	2.0	0.0
Merged-chr6-136728406-4	chr6	136727909	136728909	+	893.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127318, intron 13 of 26)	intron (NM_001127318, intron 13 of 26)	53333.0	NM_145067	14917.0	Mm.222729	NM_145067	ENSMUSG00000042638	Gucy2c	AI893437|GC-C|Gcc	guanylate cyclase 2c	protein-coding	6.5	5.5	12.0	0.0	4.5	6.0
Merged-chr13-112417174-2	chr13	112416674	112417674	+	893.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46896.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53352889-3	chr4	53352393	53353393	+	893.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12E|LTR|ERVK	-82661.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144607242-3	chr3	144606732	144607732	+	893.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER102b|DNA|hAT-Charlie	36805.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107094749-4	chr13	107094263	107095263	+	893.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72193.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30445537-4	chr7	30445081	30446081	+	893.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007467)	promoter-TSS (NM_007467)	1.0	NM_007467	11803.0	Mm.2381	NM_007467	ENSMUSG00000006651	Aplp1	-	amyloid beta (A4) precursor-like protein 1	protein-coding	0.0	0.0	0.0	0.0	3.5	0.0
Merged-chr9-70307200-3	chr9	70306705	70307705	+	893.194458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 4 of 27)	intron (NM_181072, intron 4 of 27)	98548.0	NR_049200	100885839.0		NR_049200	ENSMUSG00000093763	Mir5626	Gm25590|mir-5626|mmu-mir-5626	microRNA 5626	ncRNA	13.0	5.0	11.0	2.0	11.5	1.0
Merged-chr12-4159498-3	chr12	4159008	4160008	+	893.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 2 of 21)	intron (NM_001159537, intron 2 of 21)	25355.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6717165-4	chr2	6716674	6717674	+	893.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	4488.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-16829380-4	chr16	16828897	16829897	+	893.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015773)	promoter-TSS (NM_015773)	-34.0	NM_015773	50525.0	Mm.31701	NM_015773	ENSMUSG00000022783	Spag6l	PF16|Spag6|Spag6l1	sperm associated antigen 6-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-74855614-4	chr14	74855057	74856057	+	893.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 2 of 19)	RSINE1|SINE|B4	92320.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41495641-4	chr19	41495149	41496149	+	893.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29603.0	NM_001326287	627352.0	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	2.0	10.0	10.5	6.0	3.0	1.0
Merged-chr8-46765137-10	chr8	46764642	46765642	+	893.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	25397.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134966318-2	chr5	134965818	134966818	+	893.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-19384.0	NM_009903	12740.0	Mm.7339	NM_009903	ENSMUSG00000047501	Cldn4	Cep-r|Cpetr|Cpetr1	claudin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71444349-4	chr6	71443853	71444853	+	893.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-3716.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-33366782-3	chr19	33366283	33367283	+	893.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146342, intron 2 of 4)	intron (NM_001146342, intron 2 of 4)	25512.0	NM_001167818	67795.0	Mm.204591	NM_001146342	ENSMUSG00000071573	Rnls	6530404N21Rik|AI452315|AW060440|C10orf59	renalase, FAD-dependent amine oxidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-14699186-4	chr9	14698687	14699687	+	893.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36165.0	NR_152172	665374.0	Mm.387249	NR_152172	ENSMUSG00000111085	Gm7607	EG665374	predicted gene 7607	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87263630-3	chr3	87263138	87264138	+	893.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030707)	promoter-TSS (NM_030707)	-114.0	NM_030707	80891.0	Mm.45173	NM_030707	ENSMUSG00000015852	Fcrls	2810439C17Rik|9330158F12|FcRH2sc|Fcrh2|IFGP2|IgSR|MMAN-g|Msr2|moFcRH2sc	Fc receptor-like S, scavenger receptor	protein-coding	5.0	13.5	2.5	10.0	11.0	2.5
Merged-chr19-42147946-4	chr19	42147490	42148490	+	893.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183195, exon 1 of 2)	exon (NM_183195, exon 1 of 2)	601.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114404346-4	chr6	114403822	114404822	+	893.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252642, intron 1 of 1)	intron (NM_001252642, intron 1 of 1)	656.0	NM_001252643	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80524855-3	chr18	80524356	80525356	+	893.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19690.0	NR_028424	100039348.0	Mm.254722	NR_028424		Gm2176	A430076E10Rik	glucosamine-6-phosphate deaminase 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-40689383-4	chr6	40688891	40689891	+	893.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171003, intron 31 of 47)	intron (NM_001171003, intron 31 of 47)	60560.0	NM_001171003	232714.0	Mm.33401	NM_001171003	ENSMUSG00000068587	Mgam	6030407P20Rik|MGA	maltase-glucoamylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-14565669-2	chr19	14565169	14566169	+	893.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302951, intron 4 of 19)	intron (NM_001302951, intron 4 of 19)	31544.0	NM_001302951	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70041720-2	chr8	70041216	70042216	+	893.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028993, intron 1 of 18)	intron (NM_028993, intron 1 of 18)	1018.0	NM_001167939	74549.0	Mm.269061	NM_028993	ENSMUSG00000031858	Mau2	9130404D08Rik|A930019L04Rik|C77863|C79014|Mau-2|mKIAA0892	MAU2 sister chromatid cohesion factor	protein-coding	12.5	66.5	40.5	16.0	27.5	44.5
Merged-chr15-29824933-2	chr15	29824433	29825433	+	893.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-111529.0	NR_039542	100628607.0		NR_039542	ENSMUSG00000092639	Mir3964	mmu-mir-3964|mu-mir-3964	microRNA 3964	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76318567-2	chr12	76318067	76319067	+	893.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_138745, intron 27 of 27)	intron (NM_138745, intron 27 of 27)	-6324.0	NM_001101471	238276.0	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-19986219-4	chr14	19985724	19986724	+	893.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8975.0	NM_001285909	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-42820143-4	chr13	42819661	42820661	+	893.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005740, intron 1 of 12)	intron (NM_001005740, intron 1 of 12)	-46086.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-56758691-4	chr13	56758182	56759182	+	893.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55014.0	NM_001164042	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-60181053-4	chr9	60180545	60181545	+	893.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040426, intron 7 of 17)	intron (NM_001040426, intron 7 of 17)	-39825.0	NM_172444	207596.0	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119325729-4	chr13	119325213	119326213	+	893.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83298.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-104003664-4	chr11	104003179	104004179	+	893.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	36808.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-31113313-4	chr8	31112835	31113835	+	893.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175136, intron 1 of 5)	intron (NM_175136, intron 1 of 5)	1489.0	NM_175136	68867.0	Mm.29532	NM_175136	ENSMUSG00000039328	Rnf122	1110063C11Rik	ring finger protein 122	protein-coding	1.0	15.5	19.5	3.5	10.5	17.5
Merged-chr15-85963625-4	chr15	85963087	85964087	+	893.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009886, intron 2 of 34)	MTD|LTR|ERVL-MaLR	70190.0	NM_009886	12614.0	Mm.22680	NM_009886	ENSMUSG00000016028	Celsr1	Adgrc1|Crsh|Scy|crash	cadherin, EGF LAG seven-pass G-type receptor 1	protein-coding	0.0	0.0	0.5	1.5	0.0	1.5
Merged-chr12-99874837-3	chr12	99874340	99875340	+	893.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030172, intron 3 of 5)	intron (NM_030172, intron 3 of 5)	8602.0	NM_030172	78767.0	Mm.235920	NM_030172	ENSMUSG00000021176	Efcab11	2610021K21Rik|2610110A13Rik	EF-hand calcium binding domain 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94476496-3	chr13	94476040	94477040	+	893.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009680, intron 17 of 26)	intron (NM_009680, intron 17 of 26)	117580.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5797754-6	chr19	5797238	5798238	+	893.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_002847, exon 1 of 1)	non-coding (NR_002847, exon 1 of 1)	-1757.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18416380-3	chr16	18415873	18416873	+	893.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007744, intron 1 of 4)	intron (NM_007744, intron 1 of 4)	-2879.0	NM_001111063	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83090663-2	chr8	83090190	83091190	+	893.083374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177378, exon 7 of 7)	3' UTR (NM_177378, exon 7 of 7)	-74662.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	46.5	43.0	16.5	17.0	112.0	31.5
Merged-chr17-27165610-4	chr17	27165122	27166122	+	893.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173027, intron 1 of 5)	intron (NM_173027, intron 1 of 5)	2142.0	NM_173027	271424.0	Mm.209679	NM_173027	ENSMUSG00000024210	Ip6k3	D830007E07Rik|Ihpk3	inositol hexaphosphate kinase 3	protein-coding	0.0	14.5	5.5	1.0	8.0	11.0
Merged-chr18-69544047-4	chr18	69543550	69544550	+	893.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 6 of 19)	intron (NM_001361128, intron 6 of 19)	197890.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	11.5	8.5	6.0	12.5	11.5	5.5
Merged-chr4-130811939-4	chr4	130811454	130812454	+	893.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	19417.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60305788-3	chr11	60305281	60306281	+	893.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359810, intron 1 of 12)	intron (NM_001359810, intron 1 of 12)	47124.0	NM_153080	216810.0	Mm.218875	NM_153080	ENSMUSG00000000538	Tom1l2	2900016I08Rik|A730055F12Rik|AU042072|Srebf1	target of myb1-like 2 (chicken)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45394365-7	chr13	45393847	45394847	+	893.0714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153789, intron 2 of 6)	intron (NM_153789, intron 2 of 6)	4605.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44392699-3	chr11	44392206	44393206	+	893.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7357.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	3.0	3.0	3.5	1.5	6.5	6.0
Merged-chr5-125405887-8	chr5	125405368	125406368	+	893.064575	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15851.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76766879-3	chr15	76766360	76767360	+	893.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	-43015.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	15.0	8.0	30.5	25.0	32.0	24.0
Merged-chr11-85492594-6	chr11	85492214	85493214	+	893.055542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 14 of 25)	intron (NM_138681, intron 14 of 25)	139550.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-65664905-3	chr16	65664401	65665401	+	893.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-102204.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	3.5	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83063351-4	chr11	83062850	83063850	+	893.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1762.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80557534-2	chr10	80556991	80557991	+	893.0499880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_025852, intron 1 of 14)	intron (NM_025852, intron 1 of 14)	4069.0	NM_025852	66932.0	Mm.1116	NM_025852	ENSMUSG00000047417	Rexo1	1700021P10Rik|2610511M11Rik|AW050347|EloA-BP1|Rex1|Tceb3bp1	REX1, RNA exonuclease 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75951827-4	chr10	75951341	75952341	+	893.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2673.0	NM_198635	333669.0	Mm.31077	NM_198635	ENSMUSG00000033255	Gm5134	EG333669	predicted gene 5134	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80729901-4	chr7	80729422	80730422	+	893.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 28 of 37)	intron (NM_016721, intron 28 of 37)	-41045.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	1.5	11.5	7.0	2.0	3.0	11.0
Merged-chr2-11510667-2	chr2	11510167	11511167	+	893.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	ID_B1|SINE|B4	-8577.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46536594-1	chr4	46536094	46537094	+	893.0	f1_balb.idr	promoter-TSS (NM_029077)	promoter-TSS (NM_029077)	-453.0	NM_029077	74735.0	Mm.240252	NM_029077	ENSMUSG00000039853	Trim14	5830400N10Rik|pub	tripartite motif-containing 14	protein-coding	10.5	34.5	24.5	20.5	28.5	47.0
Merged-chr2-11552480-3	chr2	11551975	11552975	+	893.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	1454.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38534049-1	chr2	38533549	38534549	+	893.0	f0_balb.idr	intron (NM_001159631, intron 1 of 9)	intron (NM_001159631, intron 1 of 9)	22173.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-13134271-2	chr15	13133771	13134771	+	893.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007666, intron 1 of 11)	intron (NM_007666, intron 1 of 11)	39404.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93976643-6	chr2	93976091	93977091	+	893.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3443.0	NR_045827	70852.0	Mm.437014	NR_045827	ENSMUSG00000027196	Alkbh3os1	4921507L20Rik	alkB homolog 3, opposite strand 1	ncRNA	0.0	0.0	4.0	0.0	0.0	0.0
Merged-chr15-64110902-2	chr15	64110402	64111402	+	893.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 24 of 28)	intron (NM_001276461, intron 24 of 28)	-50454.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	11.0	5.0	7.5	11.0	5.0	8.5
Merged-chr6-31055693-2	chr6	31055193	31056193	+	893.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7054.0	NR_029744	387222.0		NR_029744	ENSMUSG00000065610	Mir29a	Mirn29a|mir-29a|mmu-mir-29a	microRNA 29a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-66534509-2	chr6	66534017	66535017	+	893.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019499)	promoter-TSS (NM_019499)	-704.0	NM_019499	56150.0	Mm.489653	NM_019499	ENSMUSG00000029910	Mad2l1	AA673185|MAD2	MAD2 mitotic arrest deficient-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141719568-2	chr4	141719156	141720156	+	893.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001017966, intron 1 of 9)	intron (NM_001017966, intron 1 of 9)	3763.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	19.0	54.5	42.5	14.5	67.5	54.0
Merged-chr5-105293808-3	chr5	105293310	105294310	+	893.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194336)	promoter-TSS (NM_194336)	-111.0	NM_194336	100702.0	Mm.491210	NM_194336	ENSMUSG00000104713	Gbp6	AI595338|Mpa2l	guanylate binding protein 6	protein-coding	58.5	111.5	71.5	46.0	129.0	77.0
Merged-chr2-158556277-2	chr2	158555777	158556777	+	893.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CG)n|Simple_repeat|Simple_repeat	43481.0	NM_001145015	545481.0	Mm.125371	NM_001145015	ENSMUSG00000074625	Arhgap40	C20orf95|Gm14203	Rho GTPase activating protein 40	protein-coding	0.0	3.0	0.0	0.0	3.0	0.0
Merged-chr6-125364677-2	chr6	125364177	125365177	+	893.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_198604, exon 15 of 17)	exon (NM_198604, exon 15 of 17)	14954.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	4.0	0.5	6.5	0.0	6.0	2.0
Merged-chr4-119247456-2	chr4	119246956	119247956	+	893.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001042411, exon 14 of 15)	exon (NM_001042411, exon 14 of 15)	-7985.0	NM_153105	242653.0	Mm.130701	NM_153105	ENSMUSG00000066058	Cldn19	-	claudin 19	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr8-128515708-2	chr8	128515208	128516208	+	893.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	156467.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	1.0	3.0	2.0	0.0	3.0	2.0
Merged-chr3-117309093-1	chr3	117308593	117309593	+	893.0	f0_balb.idr	Intergenic	Intergenic	51783.0	NM_177664	229791.0	Mm.140138	NM_177664	ENSMUSG00000044667	Plppr4	A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455	phospholipid phosphatase related 4	protein-coding	0.0	0.0	1.5	0.0	0.0	3.0
Merged-chr4-119339099-4	chr4	119338602	119339602	+	893.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270446, intron 5 of 9)	intron (NM_001270446, intron 5 of 9)	-18579.0	NM_001110130	66101.0	Mm.304080	NM_028677	ENSMUSG00000060288	Ppih	1100001J08Rik|2010111B15Rik|4833408F11Rik|AI464484|CYP-20|CYPH|D4Wsu43e	peptidyl prolyl isomerase H	protein-coding	0.0	0.0	0.0	0.5	2.5	1.0
Merged-chr18-53850018-1	chr18	53849518	53850518	+	893.0	f0_balb.idr	Intergenic	L1MB4|LINE|L1	-12095.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	0.0	0.0	2.0	0.0	0.5	0.0
Merged-chr4-72380322-3	chr4	72379810	72380810	+	893.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	179066.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5925685-3	chr19	5925145	5926145	+	893.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026772)	promoter-TSS (NM_026772)	-829.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	1.5	9.0	18.0	0.5	9.5	18.0
Merged-chr11-48869553-2	chr11	48869053	48870053	+	893.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008326, intron 1 of 2)	intron (NM_008326, intron 1 of 2)	1867.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-59916083-2	chr1	59915583	59916583	+	893.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037725, intron 1 of 7)	intron (NM_001037725, intron 1 of 7)	3077.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	8.0	19.5	19.0	53.0	57.0	20.5
Merged-chr2-68782771-4	chr2	68782163	68783163	+	893.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78778.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-135198527-1	chr6	135198027	135199027	+	893.0	f1_balb.idr	intron (NM_001362111, intron 1 of 12)	intron (NM_001362111, intron 1 of 12)	427.0	NM_001362111	74525.0	Mm.34182	NM_028982	ENSMUSG00000030207	Fam234b	8430419L09Rik|mKIAA1467	family with sequence similarity 234, member B	protein-coding	24.5	20.5	11.0	9.0	12.5	10.0
Merged-chr10-117669591-2	chr10	117669091	117670091	+	893.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027468, intron 4 of 8)	intron (NM_027468, intron 4 of 8)	40091.0	NM_027468	70574.0	Mm.339332	NM_027468	ENSMUSG00000020183	Cpm	1110060I01Rik|5730456K23Rik|AA589379|E030045M14Rik	carboxypeptidase M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21037214-3	chr19	21036708	21037708	+	893.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67502.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	46.0	91.5	47.5	24.0	65.5	46.0
Merged-chr4-30046578-2	chr4	30046078	30047078	+	893.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-618018.0	NR_040655	75332.0	Mm.108636	NR_040655		4930556G01Rik	-	RIKEN cDNA 4930556G01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77522603-3	chr10	77522136	77523136	+	893.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6823.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67469447-1	chr7	67468947	67469947	+	893.0	f1_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	-96589.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	5.5	0.0	2.0	1.5	0.0	3.5
Merged-chr8-84437009-3	chr8	84436455	84437455	+	893.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252060, intron 1 of 47)	intron (NM_001252060, intron 1 of 47)	21591.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	2.0	2.5	1.0	20.5	26.0	21.5
Merged-chr1-172016224-2	chr1	172015724	172016724	+	893.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033509, intron 1 of 7)	intron (NM_033509, intron 1 of 7)	11071.0	NM_033509	93840.0	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	VANGL planar cell polarity 2	protein-coding	10.5	1.5	0.0	1.0	1.5	1.0
Merged-chr13-63098266-1	chr13	63097766	63098766	+	893.0	f0_balb.idr	intron (NM_001289926, intron 5 of 15)	intron (NM_001289926, intron 5 of 15)	133373.0	NM_001289924	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.0	1.5	0.0	2.5	7.0	0.0
Merged-chr11-58060936-1	chr11	58060436	58061436	+	893.0	f1_balb.idr	3' UTR (NM_028451, exon 19 of 19)	3' UTR (NM_028451, exon 19 of 19)	-43034.0	NM_026949	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	1.0	0.0	0.5	0.0	0.0	0.5
Merged-chr12-56301773-3	chr12	56301248	56302248	+	893.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44146.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8801351-2	chr19	8800851	8801851	+	893.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1145.0	NM_133759	75291.0	Mm.23423	NM_133759	ENSMUSG00000071661	Zbtb3	4930563M09Rik	zinc finger and BTB domain containing 3	protein-coding	0.0	0.0	1.5	1.5	8.0	2.5
Merged-chr10-128589757-4	chr10	128589251	128590251	+	893.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010153)	promoter-TSS (NM_010153)	-250.0	NM_010153	13867.0	Mm.373043	NM_010153	ENSMUSG00000018166	Erbb3	C76256|Erbb-3|Erbb3r|Her3	erb-b2 receptor tyrosine kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79532872-4	chr3	79532379	79533379	+	893.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	34800.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.0	1.0	1.5	0.0	1.0	2.5
Merged-chr17-84791496-2	chr17	84790996	84791996	+	893.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028233)	promoter-TSS (NM_028233)	-710.0	NM_028233	72416.0	Mm.217027	NM_028233	ENSMUSG00000024120	Lrpprc	3110001K13Rik|C76645|Gp130|Lrp130|Lsfc	leucine-rich PPR-motif containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63085246-2	chr14	63084746	63085746	+	893.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30173.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	2.0	0.0	4.0	2.0	0.0	1.0
Merged-chr11-116297664-1	chr11	116297164	116298164	+	893.0	f1_balb.idr	intron (NM_001347636, intron 6 of 18)	intron (NM_001347636, intron 6 of 18)	9074.0	NM_016857	53413.0	Mm.22530	NM_016857	ENSMUSG00000020792	Exoc7	Exo70|sec70	exocyst complex component 7	protein-coding	0.0	10.5	1.0	0.0	3.5	0.0
Merged-chr9-61982403-2	chr9	61981903	61982903	+	893.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 2 of 7)	ID_B1|SINE|B4	-35604.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-96671916-3	chr13	96671425	96672425	+	893.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008255)	promoter-TSS (NM_008255)	-989.0	NM_008255	15357.0	Mm.316652	NM_008255	ENSMUSG00000021670	Hmgcr	HMG-CoAR|Red	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122748580-3	chr10	122748081	122749081	+	893.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	69266.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30214958-4	chr2	30214462	30215462	+	892.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9115.0	NM_172404	70266.0	Mm.216089	NM_172404	ENSMUSG00000039648	Kyat1	2010009K05Rik|AI182306|Ccbl1|Gtk|Kat1|KatI	kynurenine aminotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-57028133-4	chr4	57027637	57028637	+	892.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355492, intron 18 of 24)	intron (NM_001355492, intron 18 of 24)	-37746.0	NM_001142965	230235.0	Mm.207654	NM_001142965	ENSMUSG00000045589	Frrs1l	6430704M03Rik	ferric-chelate reductase 1 like	protein-coding	5.5	5.5	8.0	24.0	14.0	28.0
Merged-chr13-59821090-4	chr13	59820609	59821609	+	892.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153538, intron 2 of 27)	C-rich|Low_complexity|Low_complexity	2038.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	5.5	19.5	11.5	2.0	14.0	15.0
Merged-chr6-29507834-4	chr6	29507312	29508312	+	892.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029985, intron 1 of 37)	CpG	140.0	NM_001029985	333088.0	Mm.332961	NM_001029985	ENSMUSG00000059022	Kcp	AW060220|CRIM-2|Crim2|Gm793|KCP-1	kielin/chordin-like protein	protein-coding	3.0	1.0	1.0	3.5	0.0	2.5
Merged-chr10-96373699-4	chr10	96373211	96374211	+	892.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	147504.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-32192599-4	chr14	32192102	32193102	+	892.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016897, intron 4 of 6)	intron (NM_016897, intron 4 of 6)	9289.0	NM_016897	53600.0	Mm.303703	NM_016897	ENSMUSG00000013701	Timm23	Tim23	translocase of inner mitochondrial membrane 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-47216485-4	chr13	47215992	47216992	+	892.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 2 of 7)	intron (NM_146042, intron 2 of 7)	22489.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	7.0	63.0	22.5	25.5	56.5	31.0
Merged-chr15-38661065-4	chr15	38660560	38661560	+	892.912476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025494)	promoter-TSS (NM_025494)	-844.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70670034-6	chr11	70669509	70670509	+	892.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172561)	promoter-TSS (NM_172561)	-593.0	NM_001167669	216873.0	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39522769-3	chr1	39522287	39523287	+	892.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12914.0	NM_028043	52846.0	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118490359-4	chr2	118489852	118490852	+	892.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10656.0	NM_009273	20813.0	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	23.0	24.5	13.0	9.5	16.5	13.0
Merged-chr2-164823442-4	chr2	164822952	164823952	+	892.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028028, intron 1 of 1)	intron (NM_028028, intron 1 of 1)	766.0	NM_028028	71971.0	Mm.161149	NM_028028	ENSMUSG00000017764	Zswim1	2410003H12Rik|AI850991|BB046916	zinc finger SWIM-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59286512-4	chr2	59285936	59286936	+	892.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 3 of 20)	intron (NM_175464, intron 3 of 20)	100246.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53525128-2	chr11	53524628	53525628	+	892.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361969, intron 1 of 9)	intron (NM_001361969, intron 1 of 9)	4940.0	NM_001361969	20362.0	Mm.274399	NM_033144	ENSMUSG00000018398	Sept8	AW046166|Sepl	septin 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15831989-4	chr17	15831485	15832485	+	892.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5399.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44825053-4	chr7	44824562	44825562	+	892.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171024, intron 1 of 8)	intron (NM_001171024, intron 1 of 8)	-8404.0	NR_033136	107503.0	Mm.389890	NM_030693	ENSMUSG00000038539	Atf5	AFTA|Atf7|Atfx|ODA-10	activating transcription factor 5	protein-coding	1.0	1.0	5.5	6.5	7.0	12.5
Merged-chr12-91746611-4	chr12	91746109	91747109	+	892.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	MTC|LTR|ERVL-MaLR	39827.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-185276089-2	chr1	185275625	185276625	+	892.833374	f0_balb.idr|f1_c57bl6.idr	intron (NM_001163754, intron 29 of 34)	intron (NM_001163754, intron 29 of 34)	33150.0	NR_035529	100316737.0		NR_035529	ENSMUSG00000105770	Mir664	mir-664|mmu-mir-664	microRNA 664	ncRNA	0.0	3.0	2.0	2.0	2.0	1.0
Merged-chr1-85658707-4	chr1	85658198	85659198	+	892.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013673, intron 1 of 19)	intron (NM_013673, intron 1 of 19)	8710.0	NM_001313714	20684.0	Mm.290906	NM_013673	ENSMUSG00000026222	Sp100	A430075G10Rik	nuclear antigen Sp100	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99107747-2	chr7	99107247	99108247	+	892.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 3 of 14)	intron (NM_178635, intron 3 of 14)	33397.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	9.5	42.5	27.5	4.5	31.5	24.5
Merged-chr7-128460524-6	chr7	128460072	128461072	+	892.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347641, intron 1 of 12)	CpG	941.0	NM_009383	21843.0	Mm.242072	NM_009383	ENSMUSG00000030846	Tial1	5330433G13Rik|AL033329|TIAR|mTIAR	Tia1 cytotoxic granule-associated RNA binding protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-119164295-3	chr12	119163806	119164806	+	892.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177290, intron 12 of 13)	intron (NM_177290, intron 12 of 13)	73970.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107788827-3	chr13	107788339	107789339	+	892.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	101225.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.0	3.0	2.0	18.5	12.5	3.5
Merged-chr3-145026929-3	chr3	145026424	145027424	+	892.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017474, intron 3 of 13)	intron (NM_017474, intron 3 of 13)	5852.0	NM_017474	23844.0	Mm.33483	NM_017474	ENSMUSG00000028255	Clca1	Clca2|Clca3|gob-5|gob5	chloride channel accessory 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145308012-4	chr6	145307501	145308501	+	892.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	57449.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	80.0	188.0	170.0	77.0	206.5	125.0
Merged-chr18-69402193-4	chr18	69401707	69402707	+	892.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	56047.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	19.0	20.5	9.0	20.0	15.5	4.0
Merged-chr10-127557573-5	chr10	127557045	127558045	+	892.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008512, exon 49 of 89)	exon (NM_008512, exon 49 of 89)	-22986.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	2.0	0.5	2.0	0.5	2.5	4.0
Merged-chr8-84848060-5	chr8	84847517	84848517	+	892.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1086.0	NM_007591	12317.0	Mm.1971	NM_007591	ENSMUSG00000003814	Calr	CRT|Calregulin	calreticulin	protein-coding	55.5	102.0	110.0	53.5	116.0	80.5
Merged-chr9-45388822-4	chr9	45388323	45389323	+	892.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022004, intron 1 of 7)	intron (NM_022004, intron 1 of 7)	-10886.0	NR_028499	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-68234774-4	chr18	68234268	68235268	+	892.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357444, intron 1 of 3)	intron (NM_001357444, intron 1 of 3)	6822.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr11-82747202-4	chr11	82746708	82747708	+	892.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009839, intron 5 of 13)	intron (NM_009839, intron 5 of 13)	17113.0	NM_009839	12467.0	Mm.4126	NM_009839	ENSMUSG00000020698	Cct6b	CCT-zeta-2|CCTzeta-2|Cctz-2|TCP-1-zeta-2	chaperonin containing Tcp1, subunit 6b (zeta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86180603-3	chr15	86180112	86181112	+	892.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-5116.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127318248-3	chr10	127317751	127318751	+	892.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3713.0	NM_001285785	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38943220-3	chr6	38942711	38943711	+	892.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	ORR1D2|LTR|ERVL-MaLR	24225.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122058140-3	chr14	122057734	122058734	+	892.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23560.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	1.0	4.0	5.5	2.0	4.0	5.5
Merged-chr4-44704548-3	chr4	44704050	44705050	+	892.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_073462, exon 1 of 1)	non-coding (NR_073462, exon 1 of 1)	1750.0	NR_073462	70602.0	Mm.491142	NR_073462	ENSMUSG00000103995	5730488B01Rik	-	RIKEN cDNA 5730488B01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-13491930-3	chr12	13491444	13492444	+	892.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027706, intron 44 of 51)	intron (NM_027706, intron 44 of 51)	135702.0	NR_136761	102639399.0	Mm.122052	NR_136761	ENSMUSG00000113666	Gm35725	-	predicted gene, 35725	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50905476-3	chr9	50904979	50905979	+	892.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178710, intron 9 of 15)	intron (NM_178710, intron 9 of 15)	48555.0	NM_001286553	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165299918-3	chr2	165299395	165300395	+	892.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302754, intron 9 of 19)	intron (NM_001302754, intron 9 of 19)	-12057.0	NR_045544	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26647353-4	chr17	26646844	26647844	+	892.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 9 of 9)	intron (NM_026170, intron 9 of 9)	-29052.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164787206-4	chr2	164786706	164787706	+	892.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133924, intron 2 of 2)	MIR|SINE|MIR	1185.0	NM_133924	101113.0	Mm.295647	NM_133924	ENSMUSG00000050373	Snx21	5730407K14Rik|AI481716	sorting nexin family member 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-90569892-4	chr6	90569379	90570379	+	892.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027406, exon 10 of 23)	exon (NM_027406, exon 10 of 23)	19086.0	NM_027406	107747.0	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34572004-2	chr17	34571480	34572480	+	892.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010929, intron 9 of 29)	intron (NM_010929, intron 9 of 29)	7685.0	NM_010929	18132.0	Mm.173813	NM_010929	ENSMUSG00000015468	Notch4	Int-3|Int3|N4	notch 4	protein-coding	2.0	3.0	0.0	0.0	4.0	0.0
Merged-chr4-43974575-2	chr4	43974075	43975075	+	892.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_027450, intron 4 of 4)	AT_rich|Low_complexity|Low_complexity	-8929.0	NM_001002787	442829.0	Mm.348215	NM_001002787	ENSMUSG00000070999	Ccin	4933417A14Rik	calicin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60739812-4	chr10	60739338	60740338	+	892.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 2 of 5)	intron (NM_023596, intron 2 of 5)	12944.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-162004401-4	chr1	162003959	162004959	+	892.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040562)	promoter-TSS (NR_040562)	-510.0	NR_040562	72753.0	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA	104.0	285.5	145.5	25.0	53.0	44.5
Merged-chr1-166268509-2	chr1	166268009	166269009	+	892.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357432, intron 1 of 8)	intron (NM_001357432, intron 1 of 8)	14370.0	NM_001357428	100039795.0	Mm.101743	NM_001164528	ENSMUSG00000040612	Ildr2	2810478N18Rik|3110063L10Rik|AI852300|D1Ertd471e|Dbsm1|Ll	immunoglobulin-like domain containing receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-61139118-4	chr2	61138633	61139633	+	892.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-163982.0	NR_045335	100038493.0	Mm.388076	NR_045335	ENSMUSG00000075325	Gm13582	-	predicted gene 13582	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95574106-4	chr9	95573584	95574584	+	892.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14267.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-82844047-4	chr6	82843554	82844554	+	892.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37799.0	NR_040520	69652.0	Mm.96357	NR_040520	ENSMUSG00000100291	2310069B03Rik	-	RIKEN cDNA 2310069B03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101386955-2	chr7	101386479	101387479	+	892.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 8 of 33)	intron (NM_001040111, intron 8 of 33)	1453.0	NM_027180	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.0	3.0	1.0	1.5	0.0	2.5
Merged-chr2-31726930-4	chr2	31726432	31727432	+	892.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283047, intron 2 of 11)	intron (NM_001283047, intron 2 of 11)	-33007.0	NM_009594	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105781859-3	chr1	105781324	105782324	+	892.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	1101.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78856470-3	chr11	78855989	78856989	+	892.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29894.0	NM_001076681	66274.0	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157108414-4	chr2	157107921	157108921	+	892.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139520, intron 11 of 16)	BGLII_A|LTR|ERVK	21366.0	NM_001177439	383766.0	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52479394-4	chr6	52478914	52479914	+	892.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13037.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	0.0	6.5	1.0	0.0	6.5	1.0
Merged-chr15-25987216-4	chr15	25986700	25987700	+	892.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144523, exon 3 of 6)	exon (NM_144523, exon 3 of 6)	2834.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123968756-4	chr9	123968254	123969254	+	892.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009912)	promoter-TSS (NM_009912)	-62.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59692666-4	chr10	59692156	59693156	+	892.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9907.0	NM_001359267	216001.0	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104630825-4	chr8	104630374	104631374	+	892.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019662, exon 2 of 5)	exon (NM_019662, exon 2 of 5)	447.0	NM_019662	56437.0	Mm.29467	NM_019662	ENSMUSG00000031880	Rrad	REM3|Rad	Ras-related associated with diabetes	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37557914-4	chr13	37557425	37558425	+	892.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	212580.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	5.5	0.0	5.5	10.0	2.0	0.0
Merged-chr13-34994744-3	chr13	34994212	34995212	+	892.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073427)	promoter-TSS (NR_073427)	-568.0	NM_001110331	23986.0	Mm.491141	NM_011868	ENSMUSG00000021417	Eci2	Acbd2|Drs1|Hca88|Peci	enoyl-Coenzyme A delta isomerase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-82042165-3	chr6	82041690	82042690	+	892.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145570, intron 1 of 2)	intron (NM_145570, intron 1 of 2)	562.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	0.0	0.0	0.5	1.5	13.5	10.5
Merged-chr18-69585403-3	chr18	69584900	69585900	+	892.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	239240.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-83705919-3	chr2	83705413	83706413	+	892.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-18484.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	0.0	0.0	2.5	0.0	0.0	4.0
Merged-chr3-90451027-3	chr3	90450555	90451555	+	892.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008727, exon 22 of 22)	3' UTR (NM_008727, exon 22 of 22)	14811.0	NM_008727	18160.0	Mm.4627	NM_008727	ENSMUSG00000027931	Npr1	AI893888|GC-A|NPR-A|NPRA|Pndr	natriuretic peptide receptor 1	protein-coding	0.0	4.5	2.5	6.5	4.0	5.5
Merged-chr11-76525128-3	chr11	76524629	76525629	+	892.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198894, intron 1 of 22)	intron (NM_198894, intron 1 of 22)	-15710.0	NM_198018	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	4.0	0.0	8.0	3.5	1.5	0.0
Merged-chr5-144013910-3	chr5	144013407	144014407	+	892.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177682, intron 1 of 14)	intron (NM_177682, intron 1 of 14)	946.0	NM_177682	231874.0	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122585547-1	chr8	122585047	122586047	+	892.6666869999999	f0_balb.idr	intron (NM_001193645, intron 9 of 11)	intron (NM_001193645, intron 9 of 11)	-8640.0	NM_009698	11821.0	Mm.1786	NM_009698	ENSMUSG00000006589	Aprt	C85684	adenine phosphoribosyl transferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30136454-3	chr13	30135967	30136967	+	892.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153546)	promoter-TSS (NM_153546)	-23.0	NM_153546	218121.0	Mm.89682	NM_153546	ENSMUSG00000038732	Mboat1	9130215M02Rik|BC023845|LPEAT1|Moact1|Oact1	membrane bound O-acyltransferase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45221310-3	chr19	45220811	45221811	+	892.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13925.0	NM_010691	16814.0	Mm.116815	NM_010691	ENSMUSG00000025216	Lbx1	Lbx1h	ladybird homeobox 1	protein-coding	6.0	0.0	1.5	0.0	5.5	0.0
Merged-chr6-108326650-3	chr6	108326168	108327168	+	892.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 4 of 61)	intron (NM_010585, intron 4 of 61)	113572.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91581368-2	chr12	91580868	91581868	+	892.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_175335, intron 2 of 8)	intron (NM_175335, intron 2 of 8)	8281.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41467943-2	chr13	41467443	41468443	+	892.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	B4|SINE|B4	19417.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42271582-4	chr10	42271075	42272075	+	892.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	5167.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90830580-4	chr16	90830116	90831116	+	892.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_133572)	promoter-TSS (NR_133572)	-243.0	NR_133572	70967.0	Mm.253077	NM_027627	ENSMUSG00000039903	Eva1c	1700092M14Rik|4931408A02Rik|Fam176c	eva-1 homolog C (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32747841-4	chr5	32747330	32748330	+	892.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177298, intron 3 of 7)	LFSINE_Vert|SINE|tRNA	-1488.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83450856-4	chr6	83450348	83451348	+	892.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347313, intron 2 of 11)	intron (NM_001347313, intron 2 of 11)	5544.0	NM_001347313	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-88069123-4	chr11	88068588	88069588	+	892.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016686, intron 1 of 5)	CpG	809.0	NM_016686	22344.0	Mm.46628	NM_016686	ENSMUSG00000018377	Vezf1	AI848691|AW046909|db1	vascular endothelial zinc finger 1	protein-coding	10.5	4.5	25.5	13.0	16.5	7.5
Merged-chr5-27206408-3	chr5	27205915	27206915	+	892.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207282, intron 1 of 25)	intron (NM_207282, intron 1 of 25)	-55520.0	NM_001136060	13483.0	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-49633977-3	chr18	49633478	49634478	+	892.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110689.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161999543-4	chr1	161999054	162000054	+	892.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038619, intron 20 of 20)	intron (NM_001038619, intron 20 of 20)	-5415.0	NR_040562	72753.0	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA	35.5	105.0	90.5	64.0	121.5	116.5
Merged-chr13-100892329-3	chr13	100891831	100892831	+	892.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58904.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40139843-4	chr10	40139366	40140366	+	892.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	2388.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99582260-4	chr5	99581783	99582783	+	892.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	146777.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	0.0	3.0	7.0	0.0	3.0	7.0
Merged-chr12-52454098-4	chr12	52453588	52454588	+	892.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26521.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104039157-4	chr9	104038653	104039653	+	892.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028721, intron 23 of 26)	intron (NM_028721, intron 23 of 26)	23968.0	NM_025692	66663.0	Mm.224935	NM_025692	ENSMUSG00000032557	Uba5	5730525G14Rik|AW240750|Ube1dc1	ubiquitin-like modifier activating enzyme 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5363200-4	chr6	5362689	5363689	+	892.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-20197.0	NM_023048	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	23.0	20.0	12.5	6.0	4.5	4.5
Merged-chr3-58372615-3	chr3	58372092	58373092	+	892.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42128.0	NM_001081229	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102568776-3	chr4	102568291	102569291	+	892.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-1269.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21299947-4	chr14	21299447	21300447	+	892.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134079, intron 6 of 10)	intron (NM_134079, intron 6 of 10)	-199823.0	NM_001205241	54169.0	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	4.0	6.0	1.0	4.0	5.5	1.0
Merged-chr8-115585818-4	chr8	115585314	115586314	+	892.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121080.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-68299322-4	chr18	68298821	68299821	+	892.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153794, intron 1 of 3)	intron (NM_153794, intron 1 of 3)	1012.0	NM_153794	108654.0	Mm.125857	NM_153794	ENSMUSG00000038121	Fam210a	4933403F05Rik|AA987140|AV134576|AW491926	family with sequence similarity 210, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137389168-4	chr4	137388666	137389666	+	892.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20625.0	NM_001126318	242711.0	Mm.475541	NM_001126318	ENSMUSG00000078520	Cela3a	Gm13011	chymotrypsin-like elastase family, member 3A	protein-coding	45.5	179.5	98.0	101.0	192.5	123.0
Merged-chr4-81745263-4	chr4	81744760	81745760	+	892.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-258247.0	NR_030570	100124446.0		NR_030570	ENSMUSG00000077941	Mir466h	Mirn466h	microRNA 466h	ncRNA	2.0	5.0	1.0	3.0	5.0	1.0
Merged-chr12-16869618-3	chr12	16869069	16870069	+	892.5277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25409.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	24.0	80.0	49.0	37.0	109.0	92.5
Merged-chr11-105567401-4	chr11	105566871	105567871	+	892.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22615.0	NM_181071	77097.0	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84101062-3	chr12	84100643	84101643	+	892.5238039999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172580, exon 1 of 3)	exon (NM_172580, exon 1 of 3)	489.0	NM_172580	217700.0	Mm.49245	NM_172580	ENSMUSG00000043487	Acot6	4632408A20Rik|A330054B07|BE688602	acyl-CoA thioesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91472393-4	chr6	91471907	91472907	+	892.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133928, intron 1 of 2)	MIR3|SINE|MIR	1016.0	NM_133928	72170.0	Mm.41622	NM_133928	ENSMUSG00000034203	Chchd4	2410012P20Rik|2810014D17Rik|AI838740	coiled-coil-helix-coiled-coil-helix domain containing 4	protein-coding	13.5	24.5	22.0	14.0	5.5	9.5
Merged-chr16-38345519-2	chr16	38345019	38346019	+	892.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1480.0	NM_001017429	12856.0	Mm.27396	NM_001017429	ENSMUSG00000046516	Cox17	AI037035	cytochrome c oxidase assembly protein 17	protein-coding	1.5	0.0	3.0	1.5	0.0	3.0
Merged-chr13-42101962-2	chr13	42101462	42102462	+	892.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	49941.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72382710-3	chr6	72382214	72383214	+	892.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2246.0	NM_016872	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91040585-2	chr1	91040085	91041085	+	892.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-12859.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-186576793-2	chr1	186576293	186577293	+	892.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-18112.0	NR_131158	320449.0	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120840145-3	chr10	120839641	120840641	+	892.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177092, intron 4 of 6)	L1_Rod|LINE|L1	-17488.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41803591-2	chr19	41803076	41804076	+	892.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1492.0	NM_027667	71085.0	Mm.21646	NM_027667	ENSMUSG00000025154	Arhgap19	4933411B03Rik|AI120128|AW546831|mFLJ00368	Rho GTPase activating protein 19	protein-coding	4.0	0.0	4.5	0.0	0.0	2.0
Merged-chr4-153878165-4	chr4	153877655	153878655	+	892.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4_19-int|LTR|ERVK	72321.0	NR_040670	407793.0	Mm.260950	NR_040670		BC039966	-	cDNA sequence BC039966	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-130517154-3	chr7	130516675	130517675	+	892.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271343, intron 1 of 11)	MTD|LTR|ERVL-MaLR	2405.0	NM_001136054	11907.0	Mm.216321	NM_013799	ENSMUSG00000030850	Ate1	AI225793|AW547406	arginyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3912458-2	chr12	3911958	3912958	+	892.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001271753, exon 23 of 23)	3' UTR (NM_001271753, exon 23 of 23)	20714.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24435906-2	chr2	24435406	24436406	+	892.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011040, exon 9 of 12)	exon (NM_011040, exon 9 of 12)	39693.0	NM_011040	18510.0	Mm.2533	NM_011040	ENSMUSG00000026976	Pax8	Pax-8	paired box 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-39622361-2	chr12	39621861	39622861	+	892.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	415015.0	NM_007487	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35914103-2	chr17	35913565	35914565	+	892.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347380, intron 1 of 3)	B1_Mus2|SINE|Alu	2375.0	NM_001361455	66973.0	Mm.29484	NM_025878	ENSMUSG00000024436	Mrps18b	2400002C15Rik|MRP-S18-2|S18mt-b	mitochondrial ribosomal protein S18B	protein-coding	0.0	0.5	7.0	0.0	0.5	4.5
Merged-chr7-3300411-4	chr7	3299910	3300910	+	892.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3122.0	NM_001291434	18752.0	Mm.7980	NM_011102	ENSMUSG00000078816	Prkcg	PKCgamma|Pkcc|Prkcc	protein kinase C, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120294287-2	chr2	120293787	120294787	+	892.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5218.0	NM_001024137	78390.0	Mm.330507	NM_001024137	ENSMUSG00000070719	Pla2g4d	2610311B01Rik|Pla2delta|cPLA2delta	phospholipase A2, group IVD	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46532337-2	chr18	46531837	46532837	+	892.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6366.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	3.5	0.0	0.0	3.5	0.0	0.0
Merged-chr5-122344484-2	chr5	122343984	122344984	+	892.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144912, intron 4 of 10)	intron (NM_144912, intron 4 of 10)	9711.0	NM_144912	231724.0	Mm.255587	NM_144912	ENSMUSG00000038569	Rad9b	A630082N15Rik|BC021784	RAD9 checkpoint clamp component B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91185787-1	chr12	91185287	91186287	+	892.5	f0_balb.idr	intron (NM_181815, intron 20 of 25)	intron (NM_181815, intron 20 of 25)	75558.0	NR_030473	735273.0		NR_030473	ENSMUSG00000076118	Mir669c	Mirn669c|Mirn669c-1	microRNA 669c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3228453-2	chr4	3227953	3228953	+	892.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43148.0	NM_001167535	100312471.0	Mm.377218	NM_001167535	ENSMUSG00000115466	Vmn1r3	Gm11778	vomeronasal 1 receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130174133-2	chr5	130173633	130174633	+	892.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359233, intron 1 of 7)	intron (NM_001359233, intron 1 of 7)	2314.0	NM_001359233	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80758405-3	chr12	80757936	80758936	+	892.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001008423, exon 2 of 2)	exon (NM_001008423, exon 2 of 2)	2279.0	NM_001008423	380768.0	Mm.29367	NM_001008423	ENSMUSG00000062961	Ccdc177	Gm1568	coiled-coil domain containing 177	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56033070-4	chr17	56032569	56033569	+	892.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013664, intron 1 of 9)	intron (NM_013664, intron 1 of 9)	3568.0	NM_013664	20405.0	Mm.1773	NM_013664	ENSMUSG00000003200	Sh3gl1	C77078|EEN|SH3P8|Sh3d2b	SH3-domain GRB2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-123929301-2	chr1	123928801	123929801	+	892.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199021, intron 1 of 25)	RMER13A2|LTR|ERVK	116258.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53735283-3	chr11	53734800	53735800	+	892.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14506.0	NM_010558	16191.0	Mm.4461	NM_010558	ENSMUSG00000036117	Il5	Il-5	interleukin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-36253795-2	chr8	36253293	36254293	+	892.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4277.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	6.5	3.5	1.0	2.0	0.0	0.5
Merged-chr3-51343369-2	chr3	51342869	51343869	+	892.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-2725.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-49494127-2	chr9	49493627	49494627	+	892.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7902.0	NM_172770	235330.0	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding	0.0	3.0	0.5	0.0	0.0	0.0
Merged-chr17-46347358-4	chr17	46346883	46347883	+	892.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY3-int|LTR|ERVK	-19360.0	NM_170680	224814.0	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-176848976-5	chr1	176848485	176849485	+	892.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 8 of 18)	intron (NM_001357390, intron 8 of 18)	-12852.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	24.0	46.0	36.0	20.5	59.0	42.0
Merged-chr4-83262271-3	chr4	83261847	83262847	+	892.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 4 of 19)	ID_B1|SINE|B4	61842.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0.0	4.5	1.5	3.0	7.5	0.5
Merged-chr1-77438761-3	chr1	77438259	77439259	+	892.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007936, intron 4 of 17)	intron (NM_007936, intron 4 of 17)	58009.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59549493-3	chr11	59549072	59550072	+	892.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145827, exon 4 of 10)	exon (NM_145827, exon 4 of 10)	6886.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-17003397-3	chr7	17002901	17003901	+	892.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	8813.0	NM_001101535	434130.0	Mm.459162	NM_001101535	ENSMUSG00000041117	Ccdc8	-	coiled-coil domain containing 8	protein-coding	4.0	11.0	1.5	4.0	9.5	6.0
Merged-chr17-57077829-3	chr17	57077326	57078326	+	892.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153551, intron 1 of 23)	intron (NM_153551, intron 1 of 23)	684.0	NM_153551	70785.0	Mm.284447	NM_153551	ENSMUSG00000002668	Dennd1c	4432409M07Rik	DENN/MADD domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97740374-4	chr11	97739901	97740901	+	892.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054051, intron 1 of 9)	intron (NM_054051, intron 1 of 9)	4303.0	NM_054051	108083.0	Mm.39700	NM_054051	ENSMUSG00000018547	Pip4k2b	AI848124|PI5P4Kbeta|Pip5k2b|c11	phosphatidylinositol-5-phosphate 4-kinase, type II, beta	protein-coding	1.5	5.0	7.0	1.0	7.5	13.0
Merged-chr2-132316203-4	chr2	132315760	132316760	+	892.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30321.0	NM_001291039	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180943947-2	chr1	180943447	180944447	+	892.4166869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_144794, intron 1 of 22)	intron (NM_144794, intron 1 of 22)	1429.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-103359304-3	chr4	103358835	103359835	+	892.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025909, intron 8 of 8)	intron (NM_025909, intron 8 of 8)	-23165.0	NR_040673	622167.0	Mm.244115	NR_040673	ENSMUSG00000086136	Gm12718	-	predicted gene 12718	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127746885-2	chr7	127746385	127747385	+	892.375	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172748, exon 1 of 11)	5' UTR (NM_172748, exon 1 of 11)	110.0	NM_172748	233902.0	Mm.259353	NM_172748	ENSMUSG00000030811	Fbxl19	6030430O11|BC059812|Fbl19	F-box and leucine-rich repeat protein 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-56685344-4	chr4	56684823	56685823	+	892.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56102.0	NM_025271	11471.0	Mm.251434	NM_025271	ENSMUSG00000070980	Actl7b	Gm26657|Tact1	actin-like 7b	protein-coding	0.5	4.0	7.0	0.0	1.0	0.0
Merged-chr5-122394092-4	chr5	122393588	122394588	+	892.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019824, intron 1 of 6)	B3A|SINE|B2	2210.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-118126769-4	chr6	118126263	118127263	+	892.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362149, intron 2 of 7)	intron (NM_001362149, intron 2 of 7)	12067.0	NM_001362149	78752.0	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36569558-4	chr1	36569087	36570087	+	892.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-11206.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62664106-6	chr4	62663642	62664642	+	892.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134257, intron 10 of 15)	intron (NM_134257, intron 10 of 15)	-9832.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8342844-3	chr10	8342359	8343359	+	892.349976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 2 of 7)	L2c|LINE|L2	175966.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-72412463-4	chr4	72411829	72412829	+	892.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	211085.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-46096315-2	chr7	46095815	46096815	+	892.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001204411)	TTS (NM_001204411)	3922.0	NM_010602	16514.0	Mm.333863	NM_010602	ENSMUSG00000096146	Kcnj11	Kir6.2|mBIR	potassium inwardly rectifying channel, subfamily J, member 11	protein-coding	0.0	0.0	0.0	0.0	3.0	0.0
Merged-chr15-81393172-4	chr15	81392676	81393676	+	892.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133726, intron 1 of 11)	intron (NM_133726, intron 1 of 11)	6518.0	NM_133726	70356.0	Mm.180337	NM_133726	ENSMUSG00000022403	St13	1110007I03Rik|3110002K08Rik|AW555194|HIP|HOP|HSPABP|HSPABP1|PRO0786|SNC6|p48	suppression of tumorigenicity 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-183633799-2	chr1	183633203	183634203	+	892.333374	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115274.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	33.5	82.0	87.0	8.5	7.0	27.0
Merged-chr4-137953602-4	chr4	137953168	137954168	+	892.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 15 of 19)	intron (NM_199307, intron 15 of 19)	-39788.0	NM_001256198	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	15.5	28.0	58.0	28.5	21.0	28.0
Merged-chr7-128611988-2	chr7	128611496	128612496	+	892.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178641, intron 1 of 19)	intron (NM_178641, intron 1 of 19)	631.0	NM_178641	101490.0	Mm.490344	NM_178641	ENSMUSG00000042105	Inpp5f	5830435P03Rik|AI115354|AW561896|SAC2|cI-27|hSAC2|mKIAA0966	inositol polyphosphate-5-phosphatase F	protein-coding	0.0	3.5	0.5	4.5	9.0	3.0
Merged-chr15-42520950-3	chr15	42520470	42521470	+	892.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286062, intron 2 of 8)	intron (NM_001286062, intron 2 of 8)	156007.0	NM_001286062	11600.0	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76332300-3	chr16	76331818	76332818	+	892.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358238, intron 2 of 3)	intron (NM_001358238, intron 2 of 3)	40731.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25272129-4	chr15	25271637	25272637	+	892.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	141627.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65870340-4	chr17	65869858	65870858	+	892.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009067, intron 1 of 9)	B3A|SINE|B2	14565.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	0.5	0.0	1.0	0.0	4.0	1.5
Merged-chr13-107639833-4	chr13	107639333	107640333	+	892.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-47564.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	12.5	0.0	2.0	1.0	0.0	2.0
Merged-chr9-47621806-3	chr9	47621258	47622258	+	892.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	91406.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	50.0	95.5	54.5	40.0	74.0	45.5
Merged-chr12-12222825-6	chr12	12222334	12223334	+	892.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39305.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	42.5	103.5	87.0	56.5	71.5	74.0
Merged-chr12-84011663-3	chr12	84011163	84012163	+	892.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012006, intron 1 of 2)	intron (NM_012006, intron 1 of 2)	2161.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23566389-4	chr18	23565914	23566914	+	892.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361215, intron 3 of 19)	intron (NM_001361215, intron 3 of 19)	68932.0	NM_001285810	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr16-33927792-3	chr16	33927284	33928284	+	892.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	39254.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31459628-3	chr3	31459123	31460123	+	892.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-149304.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36770338-3	chr16	36769831	36770831	+	892.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021301, intron 7 of 21)	IAPLTR1_Mm|LTR|ERVK	14631.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-70180546-2	chr1	70180046	70181046	+	892.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_025728, intron 2 of 7)	intron (NM_025728, intron 2 of 7)	228931.0	NM_025728	66722.0	Mm.440554	NM_025728	ENSMUSG00000053153	Spag16	4921511D23Rik|4930524F24Rik|4930585K05Rik|AV261009|Pf20|Wdr29	sperm associated antigen 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59310318-3	chr10	59309804	59310804	+	892.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12992.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67538780-4	chr10	67538239	67539239	+	892.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347458, intron 2 of 2)	CpG	809.0	NM_001347458	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98294709-3	chr11	98294217	98295217	+	892.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	32111.0	NR_039579	100628613.0		NR_039579	ENSMUSG00000093176	Mir5119	mmu-mir-5119|mu-mir-5119	microRNA 5119	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153901462-4	chr1	153900882	153901882	+	892.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008131, intron 1 of 6)	intron (NM_008131, intron 1 of 6)	1453.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55812016-4	chr16	55811509	55812509	+	892.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001159394, exon 12 of 12)	3' UTR (NM_001159394, exon 12 of 12)	10129.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-84879876-4	chr11	84879419	84880419	+	892.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025414)	promoter-TSS (NM_025414)	276.0	NM_027388	70325.0	Mm.390414	NM_027388	ENSMUSG00000045140	Pigw	2610044A17Rik|Gwt1	phosphatidylinositol glycan anchor biosynthesis, class W	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55863950-4	chr14	55863412	55864412	+	892.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001040072, exon 3 of 8)	exon (NM_001040072, exon 3 of 8)	9797.0	NM_001040072	277154.0	Mm.319347	NM_001040072	ENSMUSG00000075592	Nynrin	AA409373|C80530|mKIAA1305	NYN domain and retroviral integrase containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123800002-4	chr9	123799477	123800477	+	892.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110253, intron 15 of 17)	G-rich|Low_complexity|Low_complexity	-6500.0	NM_030712	80901.0	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-70873667-3	chr16	70873152	70874152	+	892.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	257227.0	NR_040474	52645.0	Mm.188475	NR_040474		D16Ertd519e	-	DNA segment, Chr 16, ERATO Doi 519, expressed	ncRNA	4.5	1.0	9.0	14.5	8.0	13.0
Merged-chr10-60246714-4	chr10	60246200	60247200	+	892.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27440.0	NM_016803	53374.0	Mm.12866	NM_016803	ENSMUSG00000057337	Chst3	C6ST|C6ST-1|GST-0	carbohydrate (chondroitin 6/keratan) sulfotransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-14068220-4	chr13	14067721	14068721	+	892.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194262, intron 2 of 23)	T-rich|Low_complexity|Low_complexity	4437.0	NM_198122	94246.0	Mm.439784	NM_194262	ENSMUSG00000039219	Arid4b	BCAA|BRCAA1|RBBP1L1|Rbp1l1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165211012-4	chr1	165210512	165211512	+	892.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY3-int|LTR|ERVK	-16574.0	NR_151712	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83639853-4	chr11	83639350	83640350	+	892.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9528.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79029447-4	chr8	79029028	79030028	+	892.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 1 of 14)	CpG	1091.0	NM_178267	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-164248156-4	chr1	164247641	164248641	+	892.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054087)	promoter-TSS (NM_054087)	-905.0	NM_001276455	116914.0	Mm.35444	NM_054087	ENSMUSG00000040918	Slc19a2	AV276020|AW322295|DDA1|THTR1|TRMA|ThTr-1	solute carrier family 19 (thiamine transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21495955-2	chr19	21495458	21496458	+	892.25	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23297.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	3.5	8.5	3.5	9.0	1.5	4.5
Merged-chr19-3325116-4	chr19	3324619	3325619	+	892.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 1 of 18)	intron (NM_013495, intron 1 of 18)	1818.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	54.0	161.0	100.5	81.5	157.0	111.0
Merged-chr10-94828383-6	chr10	94827905	94828905	+	892.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 20 of 30)	intron (NM_018797, intron 20 of 30)	116173.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58080636-2	chr15	58080136	58081136	+	892.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-4128.0	NM_009572	22770.0	Mm.244931	NM_009572	ENSMUSG00000022361	Zhx1	-	zinc fingers and homeoboxes 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141669289-4	chr4	141668795	141669795	+	892.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTG)n|Simple_repeat|Simple_repeat	-5180.0	NM_001033150	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	13.5	48.0	21.5	0.5	22.0	23.0
Merged-chr7-100505243-4	chr7	100504759	100505759	+	892.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153527, intron 5 of 7)	intron (NM_153527, intron 5 of 7)	9556.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	73.0	127.5	98.5	13.5	14.0	15.5
Merged-chr2-167951482-4	chr2	167950976	167951976	+	892.2416380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	19149.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50071748-3	chr17	50071228	50072228	+	892.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 4 of 9)	ORR1D2|LTR|ERVL-MaLR	118769.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61369622-3	chr9	61369138	61370138	+	892.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2728.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4366170-3	chr12	4365679	4366679	+	892.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010881, intron 2 of 22)	ORR1E|LTR|ERVL-MaLR	111003.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-105310947-8	chr13	105310445	105311445	+	892.2177730000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-16460.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88821086-4	chr6	88820584	88821584	+	892.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166249, intron 6 of 7)	intron (NM_001166249, intron 6 of 7)	20851.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-82867307-4	chr4	82866822	82867822	+	892.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7649.0	NM_026647	68268.0	Mm.32047	NM_026647	ENSMUSG00000028403	Zdhhc21	9130404H11Rik|AL024349|D130004H04Rik|dep	zinc finger, DHHC domain containing 21	protein-coding	18.5	12.5	9.5	3.5	6.0	7.0
Merged-chr8-105218159-3	chr8	105217663	105218663	+	892.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001161457)	TTS (NM_001161457)	-7025.0	NM_145604	234678.0	Mm.27186	NM_145604	ENSMUSG00000031889	D230025D16Rik	BC006874|Lin10	RIKEN cDNA D230025D16 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81106398-4	chr15	81105891	81106891	+	892.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	-1344.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81163363-3	chr13	81162882	81163882	+	892.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 86 of 89)	intron (NM_054053, intron 86 of 89)	199308.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97148784-6	chr6	97148249	97149249	+	892.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175313, intron 1 of 17)	CpG	134.0	NM_175313	101351.0	Mm.116802	NM_175313	ENSMUSG00000035245	Eogt	A130022J15Rik|AI447490|AW214473|AW259391|Aer61	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding	17.5	53.5	28.0	11.5	33.5	53.0
Merged-chr18-20696418-2	chr18	20695918	20696918	+	892.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 5 of 8)	intron (NM_019737, intron 5 of 8)	-31158.0	NR_155534	102633478.0		NR_155534	ENSMUSG00000085595	Gm16090	-	predicted gene 16090	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122895574-2	chr5	122895074	122896074	+	892.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003953, intron 12 of 22)	PB1D9|SINE|Alu	4776.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	4.0	0.0	4.0	7.0	10.0	9.0
Merged-chr13-101840027-4	chr13	101839543	101840543	+	892.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71826.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-42331314-4	chr13	42330825	42331825	+	892.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29849.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43476910-2	chr4	43476434	43477434	+	892.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6775.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	34.5	22.5	19.0	13.0	41.0	12.0
Merged-chr2-152767776-4	chr2	152767266	152768266	+	892.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289739, intron 2 of 4)	L2b|LINE|L2	13593.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-40047998-4	chr15	40047525	40048525	+	892.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155348, intron 1 of 2)	intron (NR_155348, intron 1 of 2)	2837.0	NR_155348	102636079.0	Mm.421381	NR_155348	ENSMUSG00000115142	Gm33251	-	predicted gene, 33251	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80171379-4	chr11	80170851	80171851	+	892.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 7 of 10)	MIR3|SINE|MIR	-12521.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	77.5	110.5	93.0	74.0	111.5	87.0
Merged-chr5-121733995-4	chr5	121733513	121734513	+	892.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009125, intron 1 of 24)	intron (NM_009125, intron 1 of 24)	-4519.0	NM_001359153	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11053996-4	chr16	11053505	11054505	+	892.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12293.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124618736-12	chr2	124618359	124619359	+	892.119446	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	8563.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79168097-3	chr12	79167595	79168595	+	892.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016800, intron 1 of 5)	intron (NM_016800, intron 1 of 5)	4363.0	NM_016800	53612.0	Mm.265929	NM_016800	ENSMUSG00000021124	Vti1b	AU015348|GES30|MVti1b|SNARE|Vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding	19.5	21.5	19.0	77.5	91.0	109.0
Merged-chr16-77443524-3	chr16	77443023	77444023	+	892.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015543, intron 2 of 4)	intron (NR_015543, intron 2 of 4)	114195.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16931115-4	chr7	16930651	16931651	+	892.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7119.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-28733418-3	chr12	28732856	28733856	+	892.0833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161410, intron 3 of 11)	B1_Mm|SINE|Alu	17038.0	NM_001161410	217449.0	Mm.132006	NM_178811	ENSMUSG00000020628	Trappc12	CGI-87|D930014A20Rik|Ttc15	trafficking protein particle complex 12	protein-coding	39.5	120.5	101.5	36.0	89.5	75.0
Merged-chr10-98948229-4	chr10	98947717	98948717	+	892.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	33065.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-72601956-6	chr14	72601478	72602478	+	892.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 3 of 25)	intron (NM_207636, intron 3 of 25)	108025.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69458157-4	chr12	69457639	69458639	+	892.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17411.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	49.5	106.0	79.5	35.0	88.5	71.5
Merged-chr7-125472126-4	chr7	125471631	125472631	+	892.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026330, exon 3 of 8)	exon (NM_026330, exon 3 of 8)	19411.0	NM_001360659	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	14.5	63.5	39.5	21.5	54.5	37.0
Merged-chr8-108980863-4	chr8	108980378	108981378	+	892.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	44018.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145253186-4	chr7	145252575	145253575	+	892.0773929999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_132642)	TTS (NR_132642)	30936.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	0.5	11.5	6.0	8.5	14.5	6.5
Merged-chr7-106215394-4	chr7	106214889	106215889	+	892.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029000).2	promoter-TSS (NM_029000).2	-49.0	NM_029000	74558.0	Mm.458429	NM_029000	ENSMUSG00000045868	Gvin1	9130002C22Rik|9830104F22Rik|Iigs1|VLIG|VLIG-1	GTPase, very large interferon inducible 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51358835-10	chr3	51358296	51359296	+	892.056641	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-18152.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-36093743-3	chr8	36093225	36094225	+	892.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1103.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	0.0	2.0	2.5	5.0	4.0	1.0
Merged-chr15-99664682-4	chr15	99664184	99665184	+	892.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5693.0	NM_009597	11419.0	Mm.440107	NM_009597	ENSMUSG00000023017	Asic1	AI843610|ASIC|ASIC1a|Accn2|B530003N02Rik|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156471825-4	chr1	156471362	156472362	+	892.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 1 of 15)	intron (NM_009230, intron 1 of 15)	2466.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	214.0	455.0	371.5	235.0	427.0	281.0
Merged-chr9-119323749-4	chr9	119323156	119324156	+	892.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1229.0	NM_133985	108737.0	Mm.293565	NM_133985	ENSMUSG00000036737	Oxsr1	2210022N24Rik|2810422B09Rik|AI462649|AW209236|Osr1|mKIAA1101	oxidative-stress responsive 1	protein-coding	49.5	171.0	181.0	62.5	153.5	131.0
Merged-chr17-70999356-4	chr17	70998843	70999843	+	892.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026064, intron 1 of 3)	intron (NM_026064, intron 1 of 3)	-1331.0	NM_001357820	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	30.5	38.0	18.0	30.5	33.5	25.0
Merged-chr12-118748656-4	chr12	118748154	118749154	+	892.0125119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97675.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118007431-2	chr2	118006931	118007931	+	892.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	B1F|SINE|Alu	103771.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	2.5	0.0	2.5	1.0	0.0	1.0
Merged-chr19-16338227-2	chr19	16337727	16338727	+	892.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 5 of 6)	intron (NM_008139, intron 5 of 6)	-23223.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55781396-4	chr16	55780884	55781884	+	892.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40754.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94353492-2	chr11	94352992	94353992	+	892.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 26 of 30)	intron (NM_029600, intron 26 of 30)	25491.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171617680-2	chr1	171617180	171618180	+	892.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10270.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	29.0	41.0	55.5	17.5	32.5	55.0
Merged-chr1-105707396-1	chr1	105706896	105707896	+	892.0	f1_balb.idr	intron (NM_173187, intron 11 of 28)	Lx3C|LINE|L1	43535.0	NM_029349	227446.0	Mm.337339	NM_029349	ENSMUSG00000026319	2310035C23Rik	6430401N10|Kiaa1468|Relch|mKIAA1468	RIKEN cDNA 2310035C23 gene	protein-coding	0.0	0.0	1.0	0.0	3.5	0.5
Merged-chr14-17716431-2	chr14	17715931	17716931	+	892.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 1 of 9)	intron (NM_001113417, intron 1 of 9)	55471.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127560287-2	chr10	127559786	127560786	+	892.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 43 of 88)	intron (NM_008512, intron 43 of 88)	-25727.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	3.0	0.0	1.5	4.5	5.0	1.0
Merged-chr17-47509582-2	chr17	47509082	47510082	+	892.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	4531.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36198493-2	chr17	36197993	36198993	+	892.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8342.0	NM_008208	15043.0	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71568086-1	chr8	71567586	71568586	+	892.0	f1_balb.idr	promoter-TSS (NM_011977)	promoter-TSS (NM_011977)	-785.0	NM_011977	26457.0	Mm.38165	NM_011977	ENSMUSG00000031808	Slc27a1	FATP1|Fatp	solute carrier family 27 (fatty acid transporter), member 1	protein-coding	8.5	15.0	24.5	22.5	22.5	33.5
Merged-chr10-62540954-2	chr10	62540454	62541454	+	892.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-13509.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79092746-4	chr12	79092225	79093225	+	892.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110486, intron 2 of 2)	L1MDa|LINE|L1	-3055.0	NM_029988	110417.0	Mm.268317	NM_029988	ENSMUSG00000021120	Pigh	2210416H01Rik|A930028P05Rik	phosphatidylinositol glycan anchor biosynthesis, class H	protein-coding	3.5	1.0	10.5	3.5	1.0	12.5
Merged-chr8-70760402-3	chr8	70759874	70760874	+	892.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183170, exon 2 of 5)	exon (NM_183170, exon 2 of 5)	547.0	NM_183170	234384.0	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	0.0	1.0	1.0	2.5	12.0	3.0
Merged-chr4-152179317-2	chr4	152178817	152179817	+	892.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133348, intron 1 of 8)	intron (NM_133348, intron 1 of 8)	1217.0	NM_133348	70025.0	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-62946143-2	chr14	62945645	62946645	+	892.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 7 of 11)	B4A|SINE|B4	38365.0	NM_001037751	432867.0	Mm.99387	NM_001037751	ENSMUSG00000075574	Defb48	Defb42|EG432867	defensin beta 48	protein-coding	0.0	0.0	0.0	0.0	0.0	4.0
Merged-chr12-101759366-2	chr12	101758866	101759866	+	892.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361987, intron 9 of 10)	intron (NM_001361987, intron 9 of 10)	-40843.0	NM_001082976	74413.0	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding	2.0	4.5	2.0	11.5	3.5	2.5
Merged-chr2-181286898-2	chr2	181286398	181287398	+	892.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198169, intron 1 of 9)	intron (NM_198169, intron 1 of 9)	1068.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160360154-2	chr2	160359654	160360654	+	892.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6911.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-29208821-2	chr10	29208321	29209321	+	892.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-2822.0	NM_001162537	212448.0	Mm.132789	NM_001162537	ENSMUSG00000004360	9330159F19Rik	-	RIKEN cDNA 9330159F19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76282132-2	chr16	76281632	76282632	+	892.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90917.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107738638-2	chr9	107738138	107739138	+	892.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28163.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60045790-2	chr11	60045290	60046290	+	892.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290012, intron 1 of 6)	intron (NM_001290012, intron 1 of 6)	699.0	NM_001290012	18618.0	Mm.2731	NM_008819	ENSMUSG00000000301	Pemt	PEAMT|PEMT2|PLMT|Pempt|Pempt2	phosphatidylethanolamine N-methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122160330-1	chr8	122159830	122160830	+	892.0	f0_balb.idr	Intergenic	Intergenic	-121811.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	5.5	0.0	0.0	0.0	4.0	0.0
Merged-chr16-24902589-4	chr16	24902092	24903092	+	892.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-157047.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129534244-4	chr6	129533753	129534753	+	892.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045270)	promoter-TSS (NR_045270)	-969.0	NR_045270	100504641.0	Mm.398286	NR_045270	ENSMUSG00000097675	1700101I11Rik	-	RIKEN cDNA 1700101I11 gene	ncRNA	0.5	10.0	9.0	2.0	2.0	11.0
Merged-chr8-86911363-2	chr8	86910863	86911863	+	892.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-26105.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-151746205-2	chr3	151745698	151746698	+	892.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_133871, intron 3 of 7)	ORR1E|LTR|ERVL-MaLR	3761.0	NM_133871	99899.0	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	17.0	20.0	21.5	9.5	4.0	6.0
Merged-chr3-109196330-4	chr3	109195820	109196820	+	892.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73171.0	NM_172685	229731.0	Mm.33574	NM_172685	ENSMUSG00000040322	Slc25a24	2610016M12Rik	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-83746246-3	chr1	83745742	83746742	+	892.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-338042.0	NM_001356547	77629.0	Mm.154303	NM_172430	ENSMUSG00000026163	Sphkap	4930544G21Rik|A930009L15Rik|AI852220|SKIP|mKIAA1678	SPHK1 interactor, AKAP domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110633594-2	chr9	110633094	110634094	+	892.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183276, intron 27 of 53)	intron (NM_183276, intron 27 of 53)	2521.0	NR_106186	102466885.0		NR_106186	ENSMUSG00000099275	Mir8107	Gm27455|mmu-mir-8107	microRNA 8107	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46252239-3	chr11	46251749	46252749	+	892.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252459, intron 19 of 30)	intron (NM_001252459, intron 19 of 30)	16692.0	NM_177075	320116.0	Mm.39600	NM_177075	ENSMUSG00000048721	Fndc9	C030019I05Rik	fibronectin type III domain containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116128192-2	chr3	116127677	116128677	+	892.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011693, intron 2 of 8)	intron (NM_011693, intron 2 of 8)	1511.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	53.0	107.5	68.0	25.0	120.0	73.0
Merged-chr4-142152567-1	chr4	142152067	142153067	+	892.0	f1_c57bl6.idr	intron (NM_001109684, intron 3 of 6)	intron (NM_001109684, intron 3 of 6)	57641.0	NM_144531	71529.0	Mm.255986	NM_144531	ENSMUSG00000040606	Kazn	2310007B04Rik|9030409G11Rik|AI256607|AI666764|AW061099|Kaz|Kazrin	kazrin, periplakin interacting protein	protein-coding	0.0	0.0	3.0	0.0	0.0	1.5
Merged-chr1-154097108-2	chr1	154096608	154097608	+	892.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-104079.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3487434-1	chr2	3486934	3487934	+	892.0	f0_balb.idr	Intergenic	IAPEz-int|LTR|ERVK	-12448.0	NR_027509	64707.0	Mm.23483	NM_022724	ENSMUSG00000026646	Suv39h2	4930507K23Rik|AA536750|D030054H19Rik|D2Ertd544e|KMT1B	suppressor of variegation 3-9 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-122285550-3	chr9	122285017	122286017	+	892.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271873, intron 1 of 12)	intron (NM_001271873, intron 1 of 12)	8906.0	NM_001271873	102566.0	Mm.87676	NM_133979	ENSMUSG00000037949	Ano10	AI604832|Tmem16k	anoctamin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100624649-2	chr11	100624149	100625149	+	892.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028024, intron 2 of 3)	PB1D9|SINE|Alu	1694.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-4086029-1	chr10	4085529	4086529	+	892.0	f0_balb.idr	intron (NM_001170785, intron 21 of 27)	MTEa|LTR|ERVL-MaLR	112954.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25516241-4	chr14	25515724	25516724	+	892.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 2 of 23)	MIR|SINE|MIR	-18215.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0.5	0.0	1.0	0.5	0.0	6.0
Merged-chr13-96437156-1	chr13	96436656	96437656	+	892.0	f0_balb.idr	intron (NM_001042714, intron 7 of 13)	MLT1H1|LTR|ERVL-MaLR	34004.0	NM_001042714	271144.0	Mm.470057	NM_001042714	ENSMUSG00000047117	Ankdd1b	9330128J19Rik	ankyrin repeat and death domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10675231-3	chr17	10674731	10675731	+	892.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	ORR1E|LTR|ERVL-MaLR	164960.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108638553-2	chr12	108638053	108639053	+	892.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	2800.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-89909633-3	chr16	89909121	89910121	+	892.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 2 of 27)	intron (NM_009384, intron 2 of 27)	51206.0	NM_009384	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-48870230-6	chr13	48869715	48870715	+	891.986084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011078, intron 1 of 21)	CpG	670.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24166294-4	chr5	24165801	24166801	+	891.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153092, intron 1 of 6)	RMER6A|LTR|ERVK	1338.0	NM_001346582	231042.0	Mm.45513	NM_153092	ENSMUSG00000048439	Nupl2	AV116043|CG1|NLP-1|Nlp1	nucleoporin like 2	protein-coding	0.5	28.5	4.0	2.5	23.5	13.5
Merged-chr1-87549609-4	chr1	87549172	87550172	+	891.979126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111314, intron 1 of 14)	intron (NM_001111314, intron 1 of 14)	24198.0	NM_001111314	53972.0	Mm.435439	NM_019867	ENSMUSG00000026259	Ngef	Tims2|ephexin	neuronal guanine nucleotide exchange factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9897218-4	chr3	9896711	9897711	+	891.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-63532.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	22.0	33.0	32.0	14.0	24.5	27.0
Merged-chr7-97809525-4	chr7	97809030	97810030	+	891.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357364, intron 1 of 14)	MIRb|SINE|MIR	20989.0	NM_001357364	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	12.0	5.0	10.5	4.0	12.5	6.5
Merged-chr4-102499112-4	chr4	102498612	102499612	+	891.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177983, intron 4 of 5)	intron (NM_001177983, intron 4 of 5)	-70948.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	3.0	0.0	2.5	0.0	0.0	0.5
Merged-chr11-51900001-4	chr11	51899490	51900490	+	891.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-42360.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50944026-3	chr6	50943547	50944547	+	891.955566	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	167932.0	NR_045984	319981.0	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67386241-4	chr10	67385766	67386766	+	891.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100985.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	2.5	3.0	5.0	2.5	3.0	5.0
Merged-chr10-79892904-4	chr10	79892421	79893421	+	891.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001329541)	TTS (NM_001329541)	2068.0	NM_001291915	11537.0	Mm.4407	NM_013459	ENSMUSG00000061780	Cfd	Adn|DF	complement factor D (adipsin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52401636-4	chr6	52401144	52402144	+	891.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86812.0	NR_038163	70593.0	Mm.158412	NR_038163	ENSMUSG00000086126	Evx1os	5730457N03Rik|Evx1as	even skipped homeotic gene 1, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44356402-4	chr11	44355886	44356886	+	891.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-43677.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	0.5	0.0	6.0	0.0	0.0	5.0
Merged-chr17-8164929-4	chr17	8164446	8165446	+	891.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001197046)	promoter-TSS (NM_001197046)	-572.0	NM_001197046	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116134843-4	chr9	116134303	116135303	+	891.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 1 of 6)	B3A|SINE|B2	40560.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	6.0	9.5	8.0	29.0	19.5	14.0
Merged-chr4-148082491-3	chr4	148081942	148082942	+	891.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009642, intron 2 of 4)	intron (NM_009642, intron 2 of 4)	5622.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112722115-3	chr12	112721595	112722595	+	891.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024602)	promoter-TSS (NM_001024602)	-79.0	NM_001024602	217882.0	Mm.23689	NM_001024602	ENSMUSG00000072825	Cep170b	AI466840|AW555464|Kiaa0284|mKIAA0284	centrosomal protein 170B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-87690993-4	chr10	87690433	87691433	+	891.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-167332.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85598793-4	chr1	85598282	85599282	+	891.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030194)	promoter-TSS (NM_030194)	28.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105747924-4	chr4	105747423	105748423	+	891.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-493290.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	6.5	0.5	0.0	3.5	15.0	8.5
Merged-chr4-150257392-4	chr4	150256882	150257882	+	891.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20058.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	5.0	12.5	0.5	0.0	0.0	0.0
Merged-chr2-58159302-4	chr2	58158810	58159810	+	891.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139200, intron 1 of 7)	intron (NM_139200, intron 1 of 7)	812.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-33316008-4	chr12	33315514	33316514	+	891.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033436, intron 1 of 7)	intron (NM_001033436, intron 1 of 7)	13499.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	8.0	28.5	9.5	7.5	4.0	9.0
Merged-chr8-69937665-2	chr8	69937148	69938148	+	891.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 2 of 12)	intron (NM_001286450, intron 2 of 12)	-35090.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr1-139001202-4	chr1	139000672	139001672	+	891.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	23515.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113877609-4	chr13	113877086	113878086	+	891.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	83078.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35346215-4	chr2	35345725	35346725	+	891.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9216.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122681302-2	chr10	122680810	122681810	+	891.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	1995.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	22.5	35.5	18.0	7.0	20.5	31.0
Merged-chr13-81148023-4	chr13	81147548	81148548	+	891.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	183974.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-108780132-3	chr4	108779615	108780615	+	891.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347163, intron 1 of 18)	CpG	973.0	NM_001347163	230597.0	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	5.5	5.5	14.5	12.0	18.0	13.0
Merged-chr17-31082559-3	chr17	31082134	31083134	+	891.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	MTD|LTR|ERVL-MaLR	24940.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-42944033-2	chr9	42943533	42944533	+	891.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_175481, intron 1 of 20)	CpG	338.0	NM_175481	110637.0	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95332985-3	chr8	95332493	95333493	+	891.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133954, intron 1 of 6)	intron (NM_133954, intron 1 of 6)	709.0	NM_133954	101985.0	Mm.29069	NM_133954	ENSMUSG00000031792	Usb1	AA960436	U6 snRNA biogenesis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95250303-4	chr4	95249820	95250820	+	891.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-198098.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	2.5	0.0	0.5	3.0	0.0	0.5
Merged-chr16-18617838-4	chr16	18617342	18618342	+	891.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4561.0	NM_001001999	14724.0	Mm.475622	NM_010327	ENSMUSG00000050761	Gp1bb	-	glycoprotein Ib, beta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94647327-4	chr16	94646797	94647797	+	891.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	ORR1G|LTR|ERVL-MaLR	35878.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80538373-3	chr10	80537855	80538855	+	891.7999880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026094, intron 1 of 27)	intron (NM_026094, intron 1 of 27)	769.0	NM_026094	67331.0	Mm.52511	NM_026094	ENSMUSG00000003341	Atp8b3	1700042F02Rik|1700056N23Rik|ATPIK|SAPLT	ATPase, class I, type 8B, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-88719418-5	chr9	88719014	88720014	+	891.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359992)	promoter-TSS (NM_001359992)	73.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-83682142-3	chr9	83681643	83682643	+	891.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9332.0	NR_046066	100039222.0	Mm.405596	NR_046066	ENSMUSG00000100155	Gm2109	-	predicted gene 2109	ncRNA	1.0	0.0	2.5	5.5	0.5	2.5
Merged-chr2-6436230-4	chr2	6435736	6436736	+	891.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181399, intron 13 of 13)	intron (NM_181399, intron 13 of 13)	83500.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121718646-4	chr5	121718161	121719161	+	891.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009125, intron 1 of 24)	intron (NM_009125, intron 1 of 24)	7052.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	5.5	4.0	2.0	0.0	4.5	0.5
Merged-chr15-84942831-4	chr15	84942314	84943314	+	891.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016714, exon 8 of 8)	3' UTR (NM_016714, exon 8 of 8)	8809.0	NR_037206	100526461.0		NR_037206	ENSMUSG00000080441	Mir1249	mir-1249|mmu-mir-1249	microRNA 1249	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-79661285-3	chr14	79660815	79661815	+	891.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010701, intron 2 of 6)	CpG	868.0	NM_001310655	16840.0	Mm.46561	NM_010701	ENSMUSG00000022025	Cnmd	Bricd3|ChM-I|Chmd|Lect1	chondromodulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-452-1	chr4	-48	952	+	891.7777710000001	f1_c57bl6.idr	Intergenic	Intergenic	-3171631.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25136474-3	chr17	25135920	25136920	+	891.7666630000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317404)	promoter-TSS (NM_001317404)	-211.0	NM_001317404	26373.0	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	21.0	124.5	66.5	23.5	33.0	30.5
Merged-chr13-34229078-4	chr13	34228590	34229590	+	891.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	66126.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86600176-4	chr6	86599712	86600712	+	891.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27962.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88226159-6	chr7	88225660	88226660	+	891.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51925.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9449217-4	chr13	9448721	9449721	+	891.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	172696.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46266068-2	chr17	46265568	46266568	+	891.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252475, intron 1 of 8)	intron (NM_001252475, intron 1 of 8)	11903.0	NM_001111142	224813.0	Mm.70999	NM_001111142	ENSMUSG00000071073	Lrrc73	Gm88	leucine rich repeat containing 73	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-13471687-4	chr3	13471174	13472174	+	891.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178631)	promoter-TSS (NM_178631)	19.0	NM_001357035	76897.0	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-59593638-4	chr1	59593093	59594093	+	891.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013771, intron 12 of 19)	intron (NM_001013771, intron 12 of 19)	69299.0	NM_001357842	381260.0	Mm.486706	NM_001013771	ENSMUSG00000047361	Gm973	AW554518	predicted gene 973	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67405695-4	chr15	67405193	67406193	+	891.7374880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	178924.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	0.0	0.0	1.0	1.5	5.5	0.0
Merged-chr12-80895351-4	chr12	80894806	80895806	+	891.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29141.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43069055-3	chr17	43068559	43069559	+	891.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 4 of 5)	intron (NM_178589, intron 4 of 5)	52504.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	1.5	0.5	2.5	20.0	46.5	23.5
Merged-chr14-21981643-4	chr14	21981129	21982129	+	891.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7972.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142395165-4	chr7	142394650	142395650	+	891.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-7280.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-32183920-4	chr6	32183410	32184410	+	891.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 22 of 31)	intron (NM_175750, intron 22 of 31)	133622.0	NM_029587	76382.0	Mm.23510	NM_029587	ENSMUSG00000029766	1700012A03Rik	AI429084	RIKEN cDNA 1700012A03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103169111-4	chr15	103168603	103169603	+	891.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5819.0	NM_027885	71726.0	Mm.254820	NM_027885	ENSMUSG00000036061	Smug1	1200013B09Rik|A930006H09Rik|C85220	single-strand selective monofunctional uracil DNA glycosylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77216170-4	chr11	77215682	77216682	+	891.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177710)	promoter-TSS (NM_177710)	-243.0	NM_177710	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-61241549-3	chr3	61241055	61242055	+	891.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122952.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91968179-3	chr2	91967679	91968679	+	891.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4616.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0.0	3.5	0.0	1.5	0.0	0.0
Merged-chr11-76894310-3	chr11	76893824	76894824	+	891.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10221.0	NM_025655	66601.0	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13337455-3	chr8	13336943	13337943	+	891.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1308.0	NM_001291765	21781.0	Mm.925	NM_009361	ENSMUSG00000038482	Tfdp1	Dp1|Drtf1	transcription factor Dp 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60214428-7	chr18	60213796	60214796	+	891.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033767, intron 2 of 2)	intron (NM_001033767, intron 2 of 2)	2219.0	NM_001033767	240327.0	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	22.5	91.0	36.0	22.5	94.5	35.5
Merged-chr8-25598948-4	chr8	25598430	25599430	+	891.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1443.0	NM_173012	270035.0	Mm.268349	NM_173012	ENSMUSG00000037363	Letm2	6030453H13|D030041N04Rik	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117253388-3	chr4	117252886	117253886	+	891.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029589, intron 2 of 3)	intron (NM_029589, intron 2 of 3)	1046.0	NM_029589	68777.0	Mm.331805	NM_026837	ENSMUSG00000048772	Tmem53	1110038M16Rik|1500001P22Rik|1700012A05Rik	transmembrane protein 53	protein-coding	2.0	2.5	8.0	7.5	0.5	1.5
Merged-chr10-22002277-3	chr10	22001750	22002750	+	891.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7584.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160304173-4	chr2	160303671	160304671	+	891.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	23323.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	4.0	15.0	2.5	13.0	14.5	3.5
Merged-chr15-79139803-3	chr15	79139304	79140304	+	891.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138581, intron 2 of 6)	B2_Mm2|SINE|B2	1447.0	NM_001310581	27660.0	Mm.390827	NM_138581	ENSMUSG00000033029	1700088E04Rik	ESTJ0827E04	RIKEN cDNA 1700088E04 gene	protein-coding	0.0	0.0	2.0	4.5	0.0	0.0
Merged-chr11-116016431-6	chr11	116015932	116016932	+	891.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-3713.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	2.0	0.0	3.0	0.0	0.0	0.5
Merged-chr11-60698988-3	chr11	60698482	60699482	+	891.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159405)	promoter-TSS (NM_001159405)	-708.0	NM_001159405	16897.0	Mm.285453	NM_008502	ENSMUSG00000020536	Llgl1	AI325176|Lgl1|Llglh|Mgl1	LLGL1 scribble cell polarity complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-80883885-2	chr13	80883385	80884385	+	891.6666869999999	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153410, exon 1 of 8)	non-coding (NR_153410, exon 1 of 8)	463.0	NM_001042591	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59895372-3	chr4	59894873	59895873	+	891.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 8 of 8)	B2_Mm2|SINE|B2	19683.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-145157052-3	chr3	145156551	145157551	+	891.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38451.0	NM_025714	52184.0	Mm.259105	NM_025714	ENSMUSG00000028256	Odf2l	4733401D09Rik|9630045K08Rik|D3Ertd250e	outer dense fiber of sperm tails 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-33390347-3	chr8	33389843	33390843	+	891.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098233, intron 1 of 1)	intron (NM_001098233, intron 1 of 1)	4018.0	NM_001098233	75029.0	Mm.159402	NM_152821	ENSMUSG00000049184	Purg	4930486B15Rik	purine-rich element binding protein G	protein-coding	11.5	1.5	3.0	2.0	7.0	9.0
Merged-chr12-24675553-3	chr12	24675025	24676025	+	891.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004455, intron 1 of 4)	intron (NM_001004455, intron 1 of 4)	6270.0	NM_138686	12879.0	Mm.52265	NM_138686	ENSMUSG00000062563	Cys1	2900006B19Rik|AV218859|Ccap|ck|cpk	cystin 1	protein-coding	2.5	4.0	5.0	0.0	2.0	0.0
Merged-chr19-55744162-3	chr19	55743661	55744661	+	891.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 3 of 15)	intron (NR_138565, intron 3 of 15)	2351.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-92977634-3	chr13	92977138	92978138	+	891.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20D|LTR|ERVK	-95666.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	44.0	22.5	18.0	5.0	2.0	5.0
Merged-chr7-143007522-3	chr7	143007033	143008033	+	891.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020286, intron 2 of 7)	intron (NM_020286, intron 2 of 7)	1874.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97900012-4	chr11	97899502	97900502	+	891.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15848.0	NM_001081435	72973.0	Mm.245939	NM_001081435	ENSMUSG00000070336	Fbxo47	2900052P03Rik|Gm1562	F-box protein 47	protein-coding	1.5	2.0	0.5	0.0	8.0	5.5
Merged-chr10-127665395-6	chr10	127664867	127665867	+	891.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008668, intron 1 of 6)	intron (NM_008668, intron 1 of 6)	1336.0	NM_001122895	17937.0	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-87105904-2	chr4	87105404	87106404	+	891.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172426, intron 2 of 10)	MTD|LTR|ERVL-MaLR	122059.0	NM_001110240	76376.0	Mm.490487	NM_172426	ENSMUSG00000037996	Slc24a2	2810021B17Rik|6330417K15Rik|AI847460|Nckx2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	protein-coding	5.5	0.0	0.0	0.0	1.5	0.0
Merged-chr8-115709583-4	chr8	115709076	115710076	+	891.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2682.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74970587-4	chr15	74970092	74971092	+	891.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12838.0	NM_001358005	57248.0	Mm.358339	NM_020498	ENSMUSG00000022586	Ly6i	AI789751|Ly-6I|Ly-6M	lymphocyte antigen 6 complex, locus I	protein-coding	22.0	80.5	34.0	21.5	51.0	37.5
Merged-chr1-165739278-4	chr1	165738688	165739688	+	891.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24570.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150608819-4	chr4	150608308	150609308	+	891.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	43366.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	3.0	30.5	12.0	9.0	11.5	6.5
Merged-chr5-32881368-3	chr5	32880865	32881865	+	891.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360014, intron 7 of 40)	RMER6D|LTR|ERVK	17644.0	NM_001170567	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	3.0	26.5	2.5	5.0	29.0	2.5
Merged-chr2-124707556-3	chr2	124707065	124708065	+	891.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53984.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152529748-2	chr1	152529248	152530248	+	891.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 14 of 17)	intron (NM_016846, intron 14 of 17)	95469.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107319248-2	chr11	107318748	107319748	+	891.599976	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	intron (NR_153311, intron 4 of 9)	-129867.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100754264-3	chr15	100753772	100754772	+	891.5888669999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7475.0	NM_021530	59033.0	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	14.0	14.5	8.0	4.0	9.5	3.0
Merged-chr9-53741210-4	chr9	53740700	53741700	+	891.587524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30335.0	NM_028060	72022.0	Mm.26159	NM_028060	ENSMUSG00000042195	Slc35f2	1500009K05Rik|AU019213	solute carrier family 35, member F2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111575394-6	chr12	111574888	111575888	+	891.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045295)	promoter-TSS (NR_045295)	878.0	NM_022801	17169.0	Mm.260504	NM_021516	ENSMUSG00000007411	Mark3	1600015G02Rik|A430080F22Rik|C-TAK1|ETK-1|ETK1|Emk2|MPK10	MAP/microtubule affinity regulating kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113042067-4	chr12	113041559	113042559	+	891.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081170, intron 1 of 23)	intron (NM_001081170, intron 1 of 23)	27551.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91428794-4	chr1	91428302	91429302	+	891.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011066, intron 17 of 22)	intron (NM_011066, intron 17 of 22)	-14764.0	NM_001360900	55927.0	Mm.280029	NM_019479	ENSMUSG00000067071	Hes6	AI326893|bHLHb41	hairy and enhancer of split 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87594289-3	chr16	87593795	87594795	+	891.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144854, exon 5 of 5)	exon (NM_144854, exon 5 of 5)	40965.0	NM_144854	224419.0	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	4.0	0.0	2.5	3.5	6.5	0.0
Merged-chr6-128630234-3	chr6	128629744	128630744	+	891.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7310.0	NM_010737	17057.0	Mm.16729	NM_010737	ENSMUSG00000030361	Klrb1a	Ly55a|NKR-P1.7|NKR-P1A|NKRP12|Nkrp1-a|Nkrp1a|ly-55A	killer cell lectin-like receptor subfamily B member 1A	protein-coding	9.0	10.5	13.5	11.0	9.0	1.5
Merged-chr11-101232279-3	chr11	101231786	101232786	+	891.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5823.0	NM_007970	14055.0	Mm.5027	NM_007970	ENSMUSG00000006920	Ezh1	ENX-2	enhancer of zeste 1 polycomb repressive complex 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104660021-3	chr9	104659540	104660540	+	891.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	90557.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	1.0	34.0	18.0	16.5	7.5	17.0
Merged-chr2-170121441-3	chr2	170120945	170121945	+	891.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159683, intron 2 of 6)	intron (NM_001159683, intron 2 of 6)	9775.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	8.0	6.5	5.5	4.0	1.5	5.5
Merged-chr16-29451892-4	chr16	29451397	29452397	+	891.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164613, intron 14 of 21)	intron (NM_001164613, intron 14 of 21)	-73165.0	NM_175650	268878.0	Mm.9823	NM_175650	ENSMUSG00000048939	Atp13a5	C630015F21Rik	ATPase type 13A5	protein-coding	16.5	6.5	18.0	15.0	0.0	6.5
Merged-chr13-10210908-4	chr13	10210394	10211394	+	891.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 2 of 4)	CT-rich|Low_complexity|Low_complexity	149909.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-63704882-4	chr15	63704387	63705387	+	891.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103852.0	NM_031378	83492.0	Mm.335619	NM_031378	ENSMUSG00000079025	Gsdmc	Gsdmc1|Mlze	gasdermin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19694169-4	chr3	19693680	19694680	+	891.50415	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_205769, exon 2 of 2)	exon (NM_205769, exon 2 of 2)	1216.0	NM_205769	12918.0	Mm.290689	NM_205769	ENSMUSG00000049796	Crh	CRF|Gm1347	corticotropin releasing hormone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70009062-4	chr9	70008561	70009561	+	891.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016787, exon 11 of 11)	3' UTR (NM_016787, exon 11 of 11)	-3487.0	NM_001282084	235459.0	Mm.293117	NM_199151	ENSMUSG00000033543	Gtf2a2	TFIIA-gamma|TfIIg|Tfiia2	general transcription factor II A, 2	protein-coding	13.0	14.0	0.5	16.0	20.0	11.0
Merged-chr7-101909827-2	chr7	101909327	101910327	+	891.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025605, intron 2 of 4)	intron (NM_025605, intron 2 of 4)	-3468.0	NM_001081679	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	1.0	14.5	7.0	0.0	5.0	15.0
Merged-chr3-96764813-2	chr3	96764313	96765313	+	891.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026406, intron 3 of 8)	intron (NM_026406, intron 3 of 8)	37202.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58710769-2	chr1	58710269	58711269	+	891.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289704)	promoter-TSS (NM_001289704)	-722.0	NR_149257	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-100505527-2	chr9	100505027	100506027	+	891.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010878, intron 2 of 3)	intron (NM_010878, intron 2 of 3)	1329.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	59.5	114.5	66.0	61.0	121.0	68.0
Merged-chr12-83596566-2	chr12	83596066	83597066	+	891.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001359167, exon 2 of 13)	5' UTR (NM_001359167, exon 2 of 13)	656.0	NM_001359167	217695.0	Mm.59257	NM_183154	ENSMUSG00000042628	Zfyve1	DFCP1|G630053K23|TAFF1|ZNFN2A1|mKIAA1589	zinc finger, FYVE domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78587913-2	chr15	78587406	78588406	+	891.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6317.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	7.5	27.5	31.5	18.0	30.0	23.5
Merged-chr17-29615405-2	chr17	29614926	29615926	+	891.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021419, intron 1 of 7)	intron (NM_021419, intron 1 of 7)	637.0	NM_021419	58230.0	Mm.305994	NM_021419	ENSMUSG00000090083	Rnf8	3830404E21Rik|AIP37|laXp180	ring finger protein 8	protein-coding	6.5	12.0	15.5	11.5	17.5	10.5
Merged-chr10-31538436-2	chr10	31537936	31538936	+	891.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146349, intron 1 of 5)	intron (NM_001146349, intron 1 of 5)	71289.0	NM_001146349	268291.0	Mm.295212	NM_001146349	ENSMUSG00000063760	Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134352193-2	chr5	134351693	134352693	+	891.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	25739.0	NR_039544	100628570.0		NR_039544	ENSMUSG00000093311	Mir3965	mmu-mir-3965|mu-mir-3965	microRNA 3965	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79937270-2	chr10	79936770	79937770	+	891.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001288625, intron 3 of 8)	intron (NM_001288625, intron 3 of 8)	9929.0	NM_001288625	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76780976-4	chr15	76780471	76781471	+	891.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	37199.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-24681291-4	chr1	24680808	24681808	+	891.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310483, intron 1 of 15)	intron (NM_001310483, intron 1 of 15)	2390.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191205984-2	chr1	191205484	191206484	+	891.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-18470.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	0.0	0.0	1.5	3.5	0.0	0.0
Merged-chr8-9977203-2	chr8	9976703	9977703	+	891.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026868)	promoter-TSS (NM_026868)	-514.0	NM_001081119	68904.0	Mm.142570	NM_026868	ENSMUSG00000040396	Abhd13	1110065L07Rik|AI463703|AI788994	abhydrolase domain containing 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31850360-2	chr17	31849860	31850860	+	891.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010831, intron 7 of 13)	intron (NM_010831, intron 7 of 13)	5444.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	1.5	0.0	0.0	11.5	0.0	0.0
Merged-chr11-73131210-4	chr11	73130726	73131726	+	891.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361245, intron 22 of 30)	intron (NM_001361245, intron 22 of 30)	7068.0	NM_010353	14841.0	Mm.42045	NM_010353	ENSMUSG00000050107	Haspin	Gsg2	histone H3 associated protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-80002995-2	chr9	80002493	80003493	+	891.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357352, intron 1 of 5)	intron (NM_001357352, intron 1 of 5)	9858.0	NM_001357352	70598.0	Mm.23049	NM_001081243	ENSMUSG00000034898	Filip1	5730485H21Rik|AI843021	filamin A interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	2.5	0.0
Merged-chr2-58544505-2	chr2	58544005	58545005	+	891.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110204, intron 1 of 12)	intron (NM_001110204, intron 1 of 12)	16905.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140638735-2	chr5	140638235	140639235	+	891.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308040, intron 1 of 12)	intron (NM_001308040, intron 1 of 12)	10296.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27202164-2	chr17	27201664	27202664	+	891.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146075, intron 1 of 8)	B3|SINE|B2	2274.0	NM_146075	224640.0	Mm.29689	NM_146075	ENSMUSG00000044857	Lemd2	BC026588|Lem2|NET25	LEM domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5604064-4	chr19	5603559	5604559	+	891.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362372, intron 10 of 12)	intron (NM_001362372, intron 10 of 12)	2186.0	NM_026616	68209.0	Mm.246200	NM_026616	ENSMUSG00000024925	Rnaseh2c	1500026D16Rik|AYP1	ribonuclease H2, subunit C	protein-coding	10.5	35.5	36.5	5.0	8.0	9.5
Merged-chr15-15504796-2	chr15	15504296	15505296	+	891.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2A|LINE|L1	-1273305.0	NM_009869	12565.0	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139290650-2	chr4	139290166	139291166	+	891.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 9 of 9)	intron (NM_001037761, intron 9 of 9)	20042.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	1.5	5.0	1.0	0.0	4.5	1.0
Merged-chr11-101643762-2	chr11	101643262	101644262	+	891.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15813.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-72606038-2	chr14	72605538	72606538	+	891.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 3 of 25)	intron (NM_207636, intron 3 of 25)	103965.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-84827513-2	chr11	84827013	84828013	+	891.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177564, intron 1 of 6)	intron (NM_177564, intron 1 of 6)	1490.0	NM_177564	192970.0	Mm.192213	NM_177564	ENSMUSG00000034449	Dhrs11	-	dehydrogenase/reductase (SDR family) member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-127440734-4	chr8	127440239	127441239	+	891.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033620, intron 20 of 24)	intron (NM_033620, intron 20 of 24)	141087.0	NM_001013580	93742.0	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	112.5	208.5	156.5	6.5	12.5	4.5
Merged-chr8-120325603-2	chr8	120325103	120326103	+	891.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97373.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50825568-2	chr14	50825066	50826066	+	891.5	f0_balb.idr|f1_balb.idr	intron (NM_009351, intron 51 of 54)	intron (NM_009351, intron 51 of 54)	17650.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	27.0	29.5	16.5	1.0	26.5	10.5
Merged-chr4-105157473-5	chr4	105156931	105157931	+	891.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080555)	promoter-TSS (NM_080555)	84.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	25.0	26.5	25.5	20.0	14.5	32.0
Merged-chr5-136623336-4	chr5	136622849	136623849	+	891.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-55859.0	NM_001291238	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-118389981-4	chr1	118389482	118390482	+	891.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359330, intron 1 of 39)	intron (NM_001359330, intron 1 of 39)	924.0	NM_001359334	76707.0	Mm.138740	NM_029709	ENSMUSG00000064302	Clasp1	1700030C23Rik|5730583A19Rik|B130045P17Rik|CLASP1alpha	CLIP associating protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65260267-3	chr5	65259762	65260762	+	891.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001359879)	TTS (NM_001359879)	60566.0	NM_153391	213081.0	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64277123-3	chr7	64276627	64277627	+	891.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G|LTR|ERVL-MaLR	-10543.0	NM_172742	233315.0	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10184361-3	chr19	10183812	10184812	+	891.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146094, intron 1 of 11)	intron (NM_146094, intron 1 of 11)	1424.0	NM_146094	76267.0	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	1.5	1.5	2.5	1.5	6.5	6.0
Merged-chr10-23840779-3	chr10	23840280	23841280	+	891.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10682.0	NM_011979	26464.0	Mm.27334	NM_011979	ENSMUSG00000020010	Vnn3	-	vanin 3	protein-coding	0.0	2.5	0.0	2.0	0.0	0.5
Merged-chr1-165606251-3	chr1	165605738	165606738	+	891.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 2 of 5)	intron (NM_001083897, intron 2 of 5)	28303.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-103763162-4	chr5	103762669	103763669	+	891.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080798, intron 1 of 19)	intron (NM_001080798, intron 1 of 19)	8596.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-192094713-4	chr1	192094269	192095269	+	891.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2170.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-37771120-4	chr3	37770592	37771592	+	891.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-46732.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32950850-3	chr4	32950325	32951325	+	891.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001012451)	promoter-TSS (NM_001012451)	1.0	NM_001012451	140577.0	Mm.214766	NM_080471	ENSMUSG00000040183	Ankrd6	-	ankyrin repeat domain 6	protein-coding	0.0	0.0	4.5	4.0	1.5	1.0
Merged-chr4-129190671-4	chr4	129190178	129191178	+	891.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347203)	promoter-TSS (NM_001347203)	883.0	NM_134151	107271.0	Mm.145488	NM_134151	ENSMUSG00000028811	Yars	AL024047|AU018965	tyrosyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-55391801-4	chr18	55391311	55392311	+	891.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-399220.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-66096920-4	chr17	66096434	66097434	+	891.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028388, intron 1 of 7)	intron (NM_028388, intron 1 of 7)	4625.0	NM_001278415	72900.0	Mm.2206	NM_028388	ENSMUSG00000024099	Ndufv2	2900010C23Rik	NADH dehydrogenase (ubiquinone) flavoprotein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69118895-4	chr11	69118410	69119410	+	891.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1543.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	0.0	4.0	4.5	0.5	10.0	1.0
Merged-chr7-139979151-4	chr7	139978647	139979647	+	891.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347613)	promoter-TSS (NM_001347613)	-392.0	NM_001347613	381933.0	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	1.5	2.0	2.0	2.5	1.0	0.0
Merged-chr11-83556492-4	chr11	83556001	83557001	+	891.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22135.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69133387-2	chr11	69132887	69133887	+	891.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_011786, intron 7 of 14)	intron (NM_011786, intron 7 of 14)	7010.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	0.0	3.0	1.0	0.0	3.0	1.0
Merged-chr9-57433475-4	chr9	57432993	57433993	+	891.3833619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152145, intron 3 of 6)	intron (NR_152145, intron 3 of 6)	6243.0	NM_001357913	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90655671-4	chr2	90655164	90656164	+	891.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21551.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104541313-2	chr8	104540813	104541813	+	891.375	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301165)	promoter-TSS (NM_001301165)	4.0	NM_001301165	12354.0	Mm.129265	NM_053070	ENSMUSG00000031883	Car7	AV343731|Ca7	carbonic anhydrase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155135301-4	chr2	155134826	155135826	+	891.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243712, intron 1 of 25)	RSINE1|SINE|B4	1845.0	NM_008395	16396.0	Mm.208286	NM_008395	ENSMUSG00000027598	Itch	6720481N21Rik|8030492O04Rik|A130065M08|AIP4|C230047C07Rik	itchy, E3 ubiquitin protein ligase	protein-coding	52.0	158.0	96.0	71.5	191.0	115.0
Merged-chr16-81343157-2	chr16	81342657	81343657	+	891.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113208, intron 1 of 17)	intron (NM_001113208, intron 1 of 17)	142460.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113597261-2	chr13	113596761	113597761	+	891.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	21303.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76191166-4	chr12	76190670	76191670	+	891.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13911.0	NR_104386	13983.0	Mm.2561	NM_010157	ENSMUSG00000021055	Esr2	ER[b]|ERbeta|Estrb	estrogen receptor 2 (beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98955286-4	chr11	98954787	98955787	+	891.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009024, intron 2 of 8)	intron (NM_009024, intron 2 of 8)	-5184.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156434496-4	chr2	156433986	156434986	+	891.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013510, intron 1 of 21)	MTC|LTR|ERVL-MaLR	13577.0	NM_001291123	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	9.5	6.5	8.5	15.5	26.5	7.5
Merged-chr4-136505500-4	chr4	136505043	136506043	+	891.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024452, intron 1 of 4)	intron (NM_024452, intron 1 of 4)	35782.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	1.5	36.0	14.5	13.5	28.0	8.5
Merged-chr7-44901484-3	chr7	44901011	44902011	+	891.3333130000001	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027376)	TTS (NM_027376)	5432.0	NM_027376	70300.0	Mm.276298	NM_027376	ENSMUSG00000011658	Fuz	2600013E07Rik|b2b1273Clo	fuzzy planar cell polarity protein	protein-coding	0.0	2.0	0.0	0.0	0.0	0.0
Merged-chr4-99191866-4	chr4	99191409	99192409	+	891.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2025.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	4.5	12.5	1.5	10.0	18.5	4.5
Merged-chr2-126599251-2	chr2	126598751	126599751	+	891.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_008230, intron 9 of 11)	intron (NM_008230, intron 9 of 11)	19427.0	NM_008230	15186.0	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr11-68707221-4	chr11	68706693	68707693	+	891.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175260, intron 2 of 40)	Charlie1a|DNA|hAT-Charlie	15278.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51535502-4	chr10	51535007	51536007	+	891.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	44609.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70831359-3	chr12	70830849	70831849	+	891.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028127, intron 1 of 13)	intron (NM_028127, intron 1 of 13)	5835.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36782200-4	chr15	36781700	36782700	+	891.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356569, intron 3 of 6)	PB1D11|SINE|Alu	8732.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133130047-3	chr4	133129494	133130494	+	891.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153423)	promoter-TSS (NM_153423)	-639.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	56.0	101.0	93.0	43.5	151.5	85.5
Merged-chr10-127064337-3	chr10	127063850	127064850	+	891.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009870, exon 2 of 8)	exon (NM_009870, exon 2 of 8)	815.0	NM_001355005	12567.0	Mm.6839	NM_009870	ENSMUSG00000006728	Cdk4	Crk3	cyclin-dependent kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127761206-3	chr7	127760723	127761723	+	891.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172748, intron 7 of 10)	intron (NM_172748, intron 7 of 10)	-8592.0	NM_198424	269999.0	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142630514-4	chr5	142629997	142630997	+	891.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178398, intron 1 of 11)	intron (NM_178398, intron 1 of 11)	913.0	NM_178398	74781.0	Mm.29432	NM_178398	ENSMUSG00000029578	Wipi2	1110018O08Rik|2510001I10Rik	WD repeat domain, phosphoinositide interacting 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118887335-3	chr9	118886828	118887828	+	891.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 12 of 13)	ORR1B2|LTR|ERVL-MaLR	-39208.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71273898-3	chr6	71273408	71274408	+	891.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145568, intron 1 of 3)	intron (NM_145568, intron 1 of 3)	1889.0	NM_145568	57896.0	Mm.250569	NM_145568	ENSMUSG00000053012	Krcc1	AA792894	lysine-rich coiled-coil 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124327591-4	chr5	124327092	124328092	+	891.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028310)	promoter-TSS (NM_028310)	380.0	NM_001081323	269702.0	Mm.60224	NM_001081323	ENSMUSG00000038126	Mphosph9	4930548D04Rik|9630025B04Rik|AW413446|AW547060|B930097C17Rik|C87456|MPP-9|MPP9	M-phase phosphoprotein 9	protein-coding	3.0	11.5	15.5	2.5	13.0	13.5
Merged-chr3-63963892-3	chr3	63963390	63964390	+	891.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_015728, exon 1 of 6)	exon (NM_015728, exon 1 of 6)	843.0	NM_001272035	11416.0	Mm.135619	NM_015728	ENSMUSG00000027822	Slc33a1	AI315656|AI788741|Acatn|D630022N01Rik	solute carrier family 33 (acetyl-CoA transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21499556-5	chr14	21499172	21500172	+	891.330017	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205241)	promoter-TSS (NM_001205241)	-98.0	NM_001205241	54169.0	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151564589-4	chr1	151564099	151565099	+	891.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6774.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5002296-4	chr19	5001778	5002778	+	891.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12307.0	NM_153553	225872.0	Mm.287867	NM_153553	ENSMUSG00000045903	Npas4	LE-PAS|Nxf	neuronal PAS domain protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11147273-2	chr4	11146773	11147773	+	891.2999880000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9168.0	NM_001199105	60599.0	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap|p53DINP1	transformation related protein 53 inducible nuclear protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137374327-4	chr4	137373837	137374837	+	891.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-16578.0	NM_001243769	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	1.5	14.5	3.0	0.0	3.0	5.5
Merged-chr2-27732999-3	chr2	27732499	27733499	+	891.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	22416.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-59130570-6	chr3	59130113	59131113	+	891.255554	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001287124, exon 1 of 2)	5' UTR (NM_001287124, exon 1 of 2)	149.0	NM_001287124	140795.0	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	1.0	22.5	6.0	1.0	20.0	6.5
Merged-chr3-36060334-4	chr3	36059866	36060866	+	891.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30|LTR|ERV1	-5613.0	NM_172678	229211.0	Mm.260997	NM_172678	ENSMUSG00000027710	Acad9	2600017P15Rik|4732402K02|C630012L17Rik|NPD002	acyl-Coenzyme A dehydrogenase family, member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-35280323-2	chr3	35279823	35280823	+	891.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-357672.0	NR_105799	102466155.0		NR_105799	ENSMUSG00000098862	Mir6378	Gm27706|mmu-mir-6378	microRNA 6378	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50466971-2	chr17	50466472	50467472	+	891.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42575.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	5.0	24.5	5.5	0.5	11.0	5.5
Merged-chr7-126693433-4	chr7	126692937	126693937	+	891.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029420, intron 1 of 5)	B3|SINE|B2	2346.0	NM_029420	75764.0	Mm.280573	NM_029420	ENSMUSG00000059772	Slx1b	1110030E23Rik|2410170E21Rik|4833422P03Rik|AI853643|Giyd1|Giyd2	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21271365-4	chr19	21270861	21271861	+	891.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009551)	promoter-TSS (NM_009551)	-917.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	36.5	54.5	56.0	34.0	57.0	41.5
Merged-chr8-70806079-2	chr8	70805628	70806628	+	891.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2321.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	21.0	23.5	19.5	24.0	49.0	36.5
Merged-chr9-107548266-4	chr9	107547776	107548776	+	891.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053253, intron 2 of 11)	intron (NM_053253, intron 2 of 11)	966.0	NM_053253	114602.0	Mm.28331	NM_053253	ENSMUSG00000010044	Zmynd10	Blu	zinc finger, MYND domain containing 10	protein-coding	8.5	9.0	7.5	0.0	7.0	4.5
Merged-chr11-95006755-4	chr11	95006241	95007241	+	891.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172261, exon 10 of 10)	3' UTR (NM_172261, exon 10 of 10)	-3138.0	NM_146025	217125.0	Mm.297199	NM_146025	ENSMUSG00000047181	Samd14	AI839049|AI854782|BC034054	sterile alpha motif domain containing 14	protein-coding	0.0	2.0	4.0	1.5	3.5	0.0
Merged-chr17-24734101-2	chr17	24733608	24734608	+	891.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_025425, intron 4 of 6)	intron (NM_025425, intron 4 of 6)	1423.0	NM_025425	66211.0	Mm.46198	NM_025425	ENSMUSG00000002500	Rpl3l	1110057H16Rik	ribosomal protein L3-like	protein-coding	0.5	4.5	2.0	1.5	3.5	2.0
Merged-chr7-7300104-4	chr7	7299584	7300584	+	891.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011334)	promoter-TSS (NM_011334)	-527.0	NM_011334	12727.0	Mm.297883	NM_011334	ENSMUSG00000000605	Clcn4	Clc4-2|Clcn4-2|clC-4	chloride channel, voltage-sensitive 4	protein-coding	6.5	24.0	23.0	3.5	4.0	6.0
Merged-chr2-46315472-4	chr2	46314990	46315990	+	891.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	618885.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110643949-2	chr9	110643449	110644449	+	891.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_183276, intron 5 of 53)	intron (NM_183276, intron 5 of 53)	-7834.0	NR_106186	102466885.0		NR_106186	ENSMUSG00000099275	Mir8107	Gm27455|mmu-mir-8107	microRNA 8107	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50380057-2	chr11	50379557	50380557	+	891.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347487, intron 4 of 12)	intron (NM_001347487, intron 4 of 12)	2338.0	NM_001347487	59013.0	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128002276-4	chr7	128001776	128002776	+	891.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2102.0	NM_001079932	434246.0	Mm.389924	NM_001079932	ENSMUSG00000042828	Trim72	BC067209|MG53	tripartite motif-containing 72	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107036105-4	chr3	107035624	107036624	+	891.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008418)	promoter-TSS (NM_008418)	-38.0	NM_008418	16491.0	Mm.30640	NM_008418	ENSMUSG00000047959	Kcna3	Kca1-3|Kv1.3|Mk-3	potassium voltage-gated channel, shaker-related subfamily, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70813179-4	chr11	70812667	70813667	+	891.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045526)	promoter-TSS (NM_001045526)	-606.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	0.0	3.5	5.5	2.5	1.5	7.0
Merged-chr4-109413976-3	chr4	109413504	109414504	+	891.2333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153392, intron 1 of 17)	ORR1E|LTR|ERVL-MaLR	-1643.0	NM_001145948	230603.0	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	0.0	0.0	1.0	1.0	1.0	4.0
Merged-chr5-19897264-4	chr5	19896759	19897759	+	891.229126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 2 of 22)	intron (NM_001170746, intron 2 of 22)	-10259.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19687900-4	chr10	19687465	19688465	+	891.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24622.0	NM_172786	237313.0	Mm.234667	NM_172786	ENSMUSG00000020007	Il20ra	E230031K19	interleukin 20 receptor, alpha	protein-coding	1.0	0.0	1.5	1.5	0.0	2.0
Merged-chr12-117466139-4	chr12	117465636	117466636	+	891.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50343.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67380339-4	chr7	67379853	67380853	+	891.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7495.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66079915-4	chr5	66079405	66080405	+	891.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	18274.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117755520-7	chr10	117754948	117755948	+	891.1904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134010, intron 26 of 27)	intron (NM_134010, intron 26 of 27)	-9090.0	NM_029875	215436.0	Mm.256753	NM_029875	ENSMUSG00000060181	Slc35e3	9330166G04Rik|AI481200	solute carrier family 35, member E3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146343934-3	chr3	146343485	146344485	+	891.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34959.0	NR_033542	100038607.0	Mm.365888	NR_033542	ENSMUSG00000105602	Gm10636	-	predicted gene 10636	ncRNA	0.0	0.0	0.0	2.0	0.0	0.0
Merged-chr11-119040261-3	chr11	119039758	119040758	+	891.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013926, intron 2 of 4)	intron (NM_013926, intron 2 of 4)	655.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-9815965-4	chr1	9815478	9816478	+	891.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177547, intron 1 of 16)	intron (NM_177547, intron 1 of 16)	17848.0	NM_177547	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-85001556-4	chr15	85001054	85002054	+	891.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13583.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6483910-2	chr15	6483410	6484410	+	891.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_013485, intron 6 of 10)	RMER2|LTR|ERV1	38577.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-52256040-3	chr10	52255550	52256550	+	891.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347444, intron 1 of 9)	intron (NM_001347444, intron 1 of 9)	22431.0	NM_025705	66686.0	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-30550169-3	chr17	30549668	30550668	+	891.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172618, intron 1 of 11)	B3A|SINE|B2	26119.0	NM_172618	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	4.5	8.5	14.0	6.0	19.0	6.5
Merged-chr2-6193119-2	chr2	6192619	6193619	+	891.1666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040333)	promoter-TSS (NR_040333)	-132.0	NR_040333	320132.0	Mm.445891	NR_040333	ENSMUSG00000087125	A230108P19Rik	-	RIKEN cDNA A230108P19 gene	ncRNA	2.5	0.0	0.0	5.0	0.0	0.0
Merged-chr15-36683062-4	chr15	36682548	36683548	+	891.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74075.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-41011881-2	chr8	41011398	41012398	+	891.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 7 of 13)	intron (NM_001005863, intron 7 of 13)	-5570.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	17.0	28.5	26.5	11.0	22.0	11.5
Merged-chr16-62826580-6	chr16	62826074	62827074	+	891.1527710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026577, intron 3 of 9)	intron (NM_026577, intron 3 of 9)	11898.0	NM_026588	68159.0	Mm.386793	NM_026588	ENSMUSG00000047854	Stx19	A030009B12Rik	syntaxin 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41128464-4	chr13	41127944	41128944	+	891.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324525, intron 4 of 27)	intron (NM_001324525, intron 4 of 27)	10433.0	NM_001324525	637277.0		NM_001324525	ENSMUSG00000038651	Sycp2l	EG621792|Gm268|Gm40956	synaptonemal complex protein 2-like	protein-coding	1.0	3.0	4.5	3.5	2.0	3.0
Merged-chr7-114086290-4	chr7	114085808	114086808	+	891.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	31473.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	7.5	14.0	10.0	10.0	18.5	13.0
Merged-chr1-165763030-4	chr1	165762532	165763532	+	891.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011804)	promoter-TSS (NM_011804)	-726.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-53668789-4	chr2	53668284	53669284	+	891.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	416768.0	NM_023396	67874.0	Mm.27086	NM_023396	ENSMUSG00000075334	Rprm	2410012A13Rik|Reprimo	reprimo, TP53 dependent G2 arrest mediator candidate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115313128-3	chr5	115312645	115313645	+	891.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131932, intron 1 of 1)	intron (NR_131932, intron 1 of 1)	12025.0	NR_131932	102639268.0	Mm.319998	NR_131932		Gm13830	-	predicted gene 13830	ncRNA	1.5	0.0	2.5	0.0	6.0	3.5
Merged-chr4-45528630-6	chr4	45528126	45529126	+	891.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	2202.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	1.0	0.0	0.0	0.0	0.0	1.5
Merged-chr15-13380253-3	chr15	13379779	13380779	+	891.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-206604.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-6005899-3	chr6	6005403	6006403	+	891.0888669999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010063, intron 14 of 16)	CpG	-28510.0	NR_040255	72249.0	Mm.443268	NR_040255	ENSMUSG00000085416	1700019G24Rik	-	RIKEN cDNA 1700019G24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128808717-2	chr6	128808217	128809217	+	891.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17598.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	0.5	1.0	1.0	0.5	0.0	0.0
Merged-chr6-39226065-4	chr6	39225563	39226563	+	891.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19290.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127289516-3	chr7	127289015	127290015	+	891.0833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6745.0	NM_001253873	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5799058-7	chr19	5798532	5799532	+	891.0714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_002847, exon 1 of 1)	non-coding (NR_002847, exon 1 of 1)	-3051.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106498145-4	chr11	106497659	106498659	+	891.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2832.0	NR_030703	100216537.0		NR_030703	ENSMUSG00000065126	Snord104	-	small nucleolar RNA, C/D box 104	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66343392-4	chr7	66342910	66343910	+	891.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 2 of 33)	intron (NM_146191, intron 2 of 33)	38314.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	23.5	80.5	69.5	48.5	123.5	68.0
Merged-chr2-153779048-6	chr2	153778509	153779509	+	891.055542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1870.0	NR_036629	100504221.0	Mm.246778	NM_177849	ENSMUSG00000044083	Efcab8	A630008I04|EG329541	EF-hand calcium binding domain 8	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23728206-3	chr13	23727656	23728656	+	891.044434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-10651.0	NM_015786	50708.0	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	39.0	57.0	46.0	40.5	73.5	51.5
Merged-chr11-61868237-4	chr11	61867722	61868722	+	891.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13130.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65605110-4	chr17	65604579	65605579	+	891.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355402, intron 1 of 6)	Tigger7|DNA|TcMar-Tigger	8476.0	NM_001355402	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113442409-4	chr13	113441888	113442888	+	891.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60456.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8594116-4	chr3	8593650	8594650	+	891.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33901.0	NR_153352	102635065.0		NR_153352	ENSMUSG00000104102	Gm32496	-	predicted gene, 32496	ncRNA	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr18-38403551-4	chr18	38403070	38404070	+	891.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-15337.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80078569-2	chr15	80078069	80079069	+	891.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028282)	promoter-TSS (NR_028282)	10.0	NR_028282	100302601.0		NR_028282	ENSMUSG00000077734	Snord83b	MBII-10	small nucleolar RNA, C/D box 83B	snoRNA	5.5	6.5	10.5	8.5	6.5	9.5
Merged-chr19-5425600-3	chr19	5425086	5426086	+	891.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024176)	promoter-TSS (NM_024176)	442.0	NM_001256515	107242.0	Mm.329658	NM_134149	ENSMUSG00000047423	AI837181	Bles03|N28173	expressed sequence AI837181	protein-coding	30.5	68.5	64.5	10.0	90.0	74.0
Merged-chr16-38472159-2	chr16	38471659	38472659	+	891.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359898, intron 1 of 5)	PB1D7|SINE|Alu	13226.0	NM_009855	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103026383-3	chr3	103025891	103026891	+	891.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310693, intron 1 of 17)	B2_Mm2|SINE|B2	5845.0	NM_144901	229663.0	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-34680980-2	chr12	34680480	34681480	+	891.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-152091.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	1.5	8.5	5.0	7.0	6.5	3.5
Merged-chr4-124751945-1	chr4	124751445	124752445	+	891.0	f0_balb.idr	promoter-TSS (NR_151694)	promoter-TSS (NR_151694)	-591.0	NR_151694	102634646.0	Mm.348378	NR_151694		Gm12915	-	predicted gene 12915	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-83198111-4	chr10	83197609	83198609	+	891.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	139708.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79145815-4	chr3	79145322	79146322	+	891.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310536)	promoter-TSS (NM_001310536)	53.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23674456-2	chr17	23673958	23674958	+	891.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008425)	promoter-TSS (NM_001008425)	-581.0	NM_001357380	386612.0	Mm.328831	NM_001008425	ENSMUSG00000041319	Thoc6	F830014G06Rik|Wdr58	THO complex 6	protein-coding	9.5	3.0	11.0	5.0	6.0	3.5
Merged-chr8-75211579-1	chr8	75211079	75212079	+	891.0	f1_c57bl6.idr	Intergenic	Intergenic	-2365.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	0.0	0.0	1.5	1.5	3.5	1.0
Merged-chr11-5955152-2	chr11	5954652	5955652	+	891.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019661)	promoter-TSS (NM_019661)	-606.0	NM_019661	56418.0	Mm.294821	NM_019661	ENSMUSG00000002741	Ykt6	0610042I15Rik|1810013M05Rik|AW105923	YKT6 v-SNARE homolog (S. cerevisiae)	protein-coding	28.0	68.0	51.5	28.5	67.0	56.0
Merged-chr7-64334428-2	chr7	64333928	64334928	+	891.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172742, intron 14 of 15)	intron (NM_172742, intron 14 of 15)	39667.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65930807-2	chr3	65930331	65931331	+	891.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	27418.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0.0	9.5	0.5	1.0	6.0	8.5
Merged-chr19-10297185-4	chr19	10296686	10297686	+	891.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	7691.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96865934-2	chr11	96865482	96866482	+	891.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	15589.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	0.0	1.0	0.0	8.0	19.0	0.0
Merged-chr5-123907793-2	chr5	123907258	123908258	+	891.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_026603, intron 1 of 7)	intron (NM_026603, intron 1 of 7)	483.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	15.5	54.5	23.5	14.0	37.5	31.5
Merged-chr10-96633013-3	chr10	96632550	96633550	+	891.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16049.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76448061-2	chr15	76447561	76448561	+	891.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175457, intron 35 of 43)	intron (NM_175457, intron 35 of 43)	-9377.0	NM_198885	20289.0	Mm.322821	NM_198885	ENSMUSG00000034161	Scx	BB114693|Bhlha41|Scl	scleraxis	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182959922-2	chr1	182959422	182960422	+	891.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016928, intron 1 of 3)	intron (NM_016928, intron 1 of 3)	5134.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75036040-2	chr8	75035540	75036540	+	891.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136259, intron 1 of 15)	RMER5|LTR|ERV1	2354.0	NM_011622	21968.0	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-44086775-3	chr14	44086276	44087276	+	891.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15878.0	NM_007895	13587.0	Mm.327386	NM_007895	ENSMUSG00000072596	Ear2	EAR-13|EAR-2|ECP|ECP 2|Raf3|Rnase2	eosinophil-associated, ribonuclease A family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128494714-2	chr10	128494214	128495214	+	891.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010860)	promoter-TSS (NM_010860)	-828.0	NM_010860	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-80961384-4	chr8	80960837	80961837	+	891.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	53569.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	10.5	41.5	12.0	8.0	46.5	19.0
Merged-chr17-78829617-1	chr17	78829117	78830117	+	891.0	f1_c57bl6.idr	exon (NM_001081179, exon 5 of 36)	exon (NM_001081179, exon 5 of 36)	5764.0	NM_001081179	320473.0	Mm.46309	NM_028084	ENSMUSG00000039414	Heatr5b	2010013B10Rik|A230048G03Rik|AV071430|D330050P16Rik|mKIAA1414	HEAT repeat containing 5B	protein-coding	4.0	8.5	9.5	0.0	1.0	1.5
Merged-chr2-174477331-3	chr2	174476851	174477851	+	891.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4410.0	NM_025531	66390.0	Mm.182294	NM_025531	ENSMUSG00000016257	Prelid3b	2310042G06Rik|AA407013|Slmo2	PRELI domain containing 3B	protein-coding	2.5	4.0	3.0	0.0	5.0	3.5
Merged-chr10-42274450-3	chr10	42273942	42274942	+	891.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	2300.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128057913-4	chr10	128057412	128058412	+	891.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1070.0	NM_019766	56351.0	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3	protein-coding	0.0	1.0	0.0	0.0	5.5	3.0
Merged-chr10-18056102-3	chr10	18055597	18056597	+	891.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001111065, exon 1 of 19)	exon (NM_001111065, exon 1 of 19)	157.0	NM_001111065	19707.0	Mm.4479	NM_009048	ENSMUSG00000019854	Reps1	BB161292	RalBP1 associated Eps domain containing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-10599423-5	chr13	10598921	10599921	+	891.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-238618.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38186055-4	chr18	38185565	38186565	+	891.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	23697.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78152089-2	chr10	78151589	78152589	+	891.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17679.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150910733-2	chr4	150910233	150911233	+	891.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020569)	promoter-TSS (NM_020569)	-812.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120364744-3	chr6	120364214	120365214	+	891.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045558)	promoter-TSS (NR_045558)	-345.0	NR_045558	67200.0	Mm.45767	NM_026028	ENSMUSG00000030177	Ccdc77	2400002C23Rik|2700091N06Rik|AV168274	coiled-coil domain containing 77	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8313921-4	chr12	8313407	8314407	+	891.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021429, intron 1 of 6)	intron (NM_021429, intron 1 of 6)	474.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-137823317-2	chr6	137822817	137823817	+	891.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172733, intron 6 of 8)	(TCTG)n|Simple_repeat|Simple_repeat	68740.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166127248-3	chr2	166126752	166127752	+	891.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252579, intron 2 of 20)	intron (NM_001252579, intron 2 of 20)	28033.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-97879416-2	chr16	97878916	97879916	+	891.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_174847, intron 8 of 13)	intron (NM_174847, intron 8 of 13)	-2125.0	NR_105929	102465581.0		NR_105929	ENSMUSG00000105138	Mir6964	mmu-mir-6964	microRNA 6964	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98372390-2	chr11	98371890	98372890	+	891.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021547, intron 2 of 14)	intron (NM_021547, intron 2 of 14)	-11421.0	NM_011540	21393.0	Mm.10762	NM_011540	ENSMUSG00000007877	Tcap	AI503981|AJ223855	titin-cap	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140323695-2	chr5	140323195	140324195	+	891.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356585, intron 1 of 3)	MLTR14|LTR|ERV1	2073.0	NM_001356585	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	10.5	0.0	0.0	0.0	0.0	1.0
Merged-chr18-65524274-3	chr18	65523779	65524779	+	891.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 2 of 6)	intron (NR_105742, intron 2 of 6)	-55951.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	7.5	15.0	6.5	3.0	18.5	19.0
Merged-chr12-3727340-2	chr12	3726840	3727840	+	891.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355528, intron 10 of 17)	intron (NM_001355528, intron 10 of 17)	-79640.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120745015-3	chr8	120744506	120745506	+	891.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301811, intron 3 of 8)	intron (NM_001301811, intron 3 of 8)	6367.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3796894-2	chr4	3796394	3797394	+	891.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38761.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98939233-2	chr15	98938733	98939733	+	891.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4843.0	NM_011654	22143.0	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	0.0	0.0	2.5	0.0	0.0	1.5
Merged-chr18-35874575-4	chr18	35874080	35875080	+	891.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19893.0	NM_001357459	67393.0	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33923095-4	chr16	33922579	33923579	+	890.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	43959.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121124460-4	chr5	121123976	121124976	+	890.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30D2_MM|LTR|ERV1	66921.0	NM_001109992	19247.0	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-4969871-3	chr17	4969355	4970355	+	890.9722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25219.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-44065864-4	chr4	44065362	44066362	+	890.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190414, intron 2 of 11)	intron (NM_001190414, intron 2 of 11)	6855.0	NM_001357539	50798.0	Mm.256718	NM_015828	ENSMUSG00000028479	Gne	2310066H07Rik|DMRV|GLCNE|IBM2|NM|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120602119-4	chr9	120601604	120602604	+	890.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24773.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152573865-4	chr1	152573362	152574362	+	890.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	51355.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49923133-3	chr7	49922641	49923641	+	890.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146013, intron 5 of 15)	PB1D11|SINE|Alu	11441.0	NM_148931	104245.0	Mm.207053	NM_148931	ENSMUSG00000039728	Slc6a5	Glyt2|prestin	solute carrier family 6 (neurotransmitter transporter, glycine), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-68794605-3	chr3	68794125	68795125	+	890.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33130.0	NR_153374	102639225.0	Mm.109095	NR_153374	ENSMUSG00000102936	Gm35584	-	predicted gene, 35584	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51095728-6	chr14	51095147	51096147	+	890.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007447)	promoter-TSS (NM_007447)	-353.0	NM_007447	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	7.0	29.0	22.0	13.5	11.0	21.0
Merged-chr11-98810659-4	chr11	98810149	98811149	+	890.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033551)	promoter-TSS (NR_033551)	-560.0	NR_033551	100037262.0	Mm.442062	NR_033551	ENSMUSG00000075576	Gm12359	-	predicted gene 12359	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107771180-4	chr3	107770685	107771685	+	890.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10716.0	NM_001113529	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4219642-3	chr11	4219131	4220131	+	890.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028022, intron 2 of 8)	intron (NM_028022, intron 2 of 8)	1380.0	NM_028022	71962.0	Mm.7852	NM_028022	ENSMUSG00000020424	Gatsl3	2410008K03Rik|Castor1	GATS protein-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155019456-3	chr2	155018973	155019973	+	890.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015770, intron 1 of 3)	ERVB4_1-I_MM-int|LTR|ERVK	5903.0	NM_015770	50518.0	Mm.315593	NM_015770	ENSMUSG00000027596	a	A<y>|ASIP|ASP|As	nonagouti	protein-coding	1.5	1.0	2.0	1.5	0.0	0.0
Merged-chr5-34285519-3	chr5	34285007	34286007	+	890.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 1 of 12)	intron (NM_001015039, intron 1 of 12)	2817.0	NM_001015039	231125.0	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14055229-4	chr2	14054712	14055712	+	890.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012396, intron 1 of 5)	CpG	823.0	NM_001012396	30963.0	Mm.241205	NM_013935	ENSMUSG00000063275	Hacd1	Ptpla	3-hydroxyacyl-CoA dehydratase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39460987-4	chr18	39460476	39461476	+	890.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	26269.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	3.0	1.5	3.5	0.0	13.0	8.5
Merged-chr4-28815504-4	chr4	28814918	28815918	+	890.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010141, intron 1 of 16)	CpG	2273.0	NM_001122889	13841.0	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128776645-4	chr2	128776106	128777106	+	890.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 10 of 18)	intron (NM_008587, intron 10 of 18)	-41697.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	7.0	13.5	12.0	17.5	48.5	8.0
Merged-chr5-130455238-4	chr5	130454647	130455647	+	890.8645630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021371, intron 1 of 5)	B4|SINE|B4	6355.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16619049-3	chr7	16618504	16619504	+	890.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136929, intron 1 of 2)	CpG	-4011.0	NM_172739	232906.0	Mm.28646	NM_172739	ENSMUSG00000058230	Arhgap35	6430596G11Rik|AI841135|Grlf1|mKIAA1722|p190A|p190RhoGAP	Rho GTPase activating protein 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6400299-11	chr19	6399697	6400697	+	890.841614	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011242)	promoter-TSS (NM_011242)	-386.0	NM_011242	19395.0	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64232803-2	chr5	64232303	64233303	+	890.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	2446.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-4821979-4	chr15	4821459	4822459	+	890.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-76778.0	NM_001166066	223825.0	Mm.159281	NM_001166066	ENSMUSG00000022155	Mroh2b	4930455B06Rik|Heatr7b2|SPIF	maestro heat-like repeat family member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180709470-3	chr2	180708970	180709970	+	890.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289651)	promoter-TSS (NM_001289651)	529.0	NM_177852	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181890204-3	chr2	181889682	181890682	+	890.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	25822.0	NM_025901	67005.0	Mm.271986	NM_025901	ENSMUSG00000038628	Polr3k	12.3kDa|1500004O14Rik|AI196849|AU014893|C11|RPC10|RPC11	polymerase (RNA) III (DNA directed) polypeptide K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40391737-2	chr19	40391237	40392237	+	890.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034962, intron 5 of 22)	intron (NM_001034962, intron 5 of 22)	10573.0	NM_001034964	20411.0	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr19-14449960-3	chr19	14449523	14450523	+	890.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302951, intron 19 of 19)	intron (NM_001302951, intron 19 of 19)	-11517.0	NR_003027	19862.0		NR_003027	ENSMUSG00000095132	Rnu6	-	U6 small nuclear RNA	snRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135095336-3	chr1	135094838	135095838	+	890.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033409, intron 1 of 17)	intron (NM_001033409, intron 1 of 17)	9938.0	NM_001033409	329252.0	Mm.279594	NM_001033409	ENSMUSG00000042793	Lgr6	A530037C04Rik|D830026M09	leucine-rich repeat-containing G protein-coupled receptor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122898505-5	chr8	122897960	122898960	+	890.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 7 of 12)	intron (NM_001081379, intron 7 of 12)	50086.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44897760-3	chr7	44897289	44898289	+	890.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_027376, intron 5 of 10)	intron (NM_027376, intron 5 of 10)	1710.0	NM_027376	70300.0	Mm.276298	NM_027376	ENSMUSG00000011658	Fuz	2600013E07Rik|b2b1273Clo	fuzzy planar cell polarity protein	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr16-10399310-3	chr16	10398784	10399784	+	890.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3819.0	NM_001291001	70426.0	Mm.142181	NM_001099275	ENSMUSG00000039179	Tekt5	3300001K11Rik	tektin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97761052-2	chr7	97760552	97761552	+	890.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-22805.0	NM_175105	66333.0	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	0.0	7.5	0.0	1.0	0.0	0.0
Merged-chr9-111083751-3	chr9	111083253	111084253	+	890.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26235.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19253887-4	chr7	19253383	19254383	+	890.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17971.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102673746-4	chr15	102673253	102674253	+	890.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1887.0	NR_030460	751542.0		NR_030460	ENSMUSG00000076009	Mir688	Mirn688|mmu-mir-688	microRNA 688	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34651114-4	chr13	34650589	34651589	+	890.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025831, intron 1 of 4)	intron (NM_025831, intron 1 of 4)	1592.0	NM_025831	66895.0	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-57653525-5	chr8	57652981	57653981	+	890.8033449999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144731)	promoter-TSS (NM_144731)	-426.0	NM_144731	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-58136241-5	chr18	58135745	58136745	+	890.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010181, intron 7 of 64)	intron (NM_010181, intron 7 of 64)	73681.0	NM_010181	14119.0	Mm.20271	NM_010181	ENSMUSG00000024598	Fbn2	BC063774|Fib-2|mKIAA4226|sne|sy	fibrillin 2	protein-coding	10.0	3.5	9.0	10.0	3.5	10.0
Merged-chr19-3996542-2	chr19	3996042	3997042	+	890.7999880000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_001001320, exon 2 of 8)	exon (NM_001001320, exon 2 of 8)	3790.0	NM_011533	109575.0	Mm.246555	NM_011533	ENSMUSG00000037477	Tbx10	Dc|Tbx13|Tbx7	T-box 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75069662-6	chr14	75069158	75070158	+	890.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	53631.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-68886295-4	chr2	68885796	68886796	+	890.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	RMER10B|LTR|ERVL	24855.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-31116778-4	chr7	31116258	31117258	+	890.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011322, exon 6 of 6)	3' UTR (NM_011322, exon 6 of 6)	-1432.0	NM_001110252	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	39.5	87.0	62.0	40.5	100.0	59.5
Merged-chr11-61764959-3	chr11	61764453	61765453	+	890.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-2865.0	NM_001164243	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-18912414-3	chr8	18911911	18912911	+	890.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38460.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	3.0	1.0	4.0	5.0	21.0	9.0
Merged-chr13-56129717-3	chr13	56129215	56130215	+	890.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159513, intron 1 of 8)	MLT1J2|LTR|ERVL-MaLR	5835.0	NM_012015	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0.0	0.0	3.0	6.0	0.5	0.0
Merged-chr13-5779052-4	chr13	5778575	5779575	+	890.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79017.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31108571-4	chr17	31108062	31109062	+	890.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 9 of 14)	intron (NM_009593, intron 9 of 14)	21049.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111944978-4	chr13	111944495	111945495	+	890.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	77059.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23872597-2	chr18	23872097	23873097	+	890.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	68627.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-68278477-4	chr8	68277976	68278976	+	890.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028182, intron 1 of 8)	intron (NM_028182, intron 1 of 8)	1948.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45920088-2	chr7	45919588	45920588	+	890.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146346, intron 2 of 4)	intron (NM_001146346, intron 2 of 4)	761.0	NM_001146346	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	0.0	12.0	0.5	1.5	7.5	1.0
Merged-chr11-115051366-4	chr11	115050855	115051855	+	890.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172050)	TTS (NM_172050)	-3060.0	NM_199201	382551.0	Mm.424732	NM_199201	ENSMUSG00000069607	Cd300ld3	AY457049|Cd300lh|Clm3|Lmir7|clm-3	CD300 molecule like family member D3	protein-coding	2.0	0.0	0.0	0.0	1.5	1.0
Merged-chr2-51089917-4	chr2	51089418	51090418	+	890.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59193.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21358818-4	chr5	21358312	21359312	+	890.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	-13861.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19342216-4	chr7	19341716	19342716	+	890.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2855.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	1.0	0.0	1.5	2.0	6.5	3.0
Merged-chr10-127413723-2	chr10	127413223	127414223	+	890.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359244, intron 3 of 25)	intron (NM_001359244, intron 3 of 25)	-7144.0	NM_027900	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	0.5	6.5	2.5	0.0	6.5	2.5
Merged-chr16-21687525-4	chr16	21687031	21688031	+	890.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001881, intron 1 of 1)	Lx8|LINE|L1	7134.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60676112-2	chr13	60675661	60676661	+	890.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	73950.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	14.5	18.5	13.5	18.5	5.5	22.0
Merged-chr5-30009542-2	chr5	30009042	30010042	+	890.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3572.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45052449-4	chr13	45051952	45052952	+	890.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50356.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6011825-4	chr15	6011338	6012338	+	890.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	32866.0	NR_155428	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30928501-4	chr2	30927992	30928992	+	890.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24509.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132115246-2	chr2	132114746	132115746	+	890.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	29862.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-100450844-3	chr9	100450235	100451235	+	890.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35738.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	0.0	9.0	1.0	3.0	5.5	2.0
Merged-chr3-88335907-1	chr3	88335407	88336407	+	890.6666869999999	f0_balb.idr	promoter-TSS (NM_178246)	promoter-TSS (NM_178246)	-353.0	NM_178246	229512.0	Mm.439830	NM_173188	ENSMUSG00000001415	Smg5	BC024683|mKIAA1089	Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-60658573-3	chr1	60658030	60659030	+	890.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-87858.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	10.5	10.5	24.0	10.5	14.0	10.0
Merged-chr10-80824411-3	chr10	80823924	80824924	+	890.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2232.0	NM_001301034	18245.0	Mm.398119	NM_008753	ENSMUSG00000035242	Oaz1	AZ-1|AZ1|Antizyme|ODC-Az|Oaz	ornithine decarboxylase antizyme 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-106193336-3	chr14	106192836	106193836	+	890.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	87138.0	NR_073203	212085.0	Mm.78128	NM_198601	ENSMUSG00000022113	Trim52	4921513B05Rik	tripartite motif-containing 52	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83875263-3	chr8	83874749	83875749	+	890.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-24849.0	NM_181039	330814.0	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	0.5	4.0	8.0	3.0	9.0	0.0
Merged-chr4-58422867-3	chr4	58422351	58423351	+	890.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18247.0	NR_037278	100526502.0		NR_037278	ENSMUSG00000093293	Mir3095	mir-3095|mmu-mir-3095	microRNA 3095	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-77386793-4	chr5	77386175	77387175	+	890.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008048, intron 1 of 4)	intron (NM_008048, intron 1 of 4)	21370.0	NM_001159518	29817.0	Mm.233470	NM_008048	ENSMUSG00000036256	Igfbp7	AGM|Fstl2|Mac25	insulin-like growth factor binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10817573-2	chr17	10817073	10818073	+	890.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 1 of 4)	L1MA7|LINE|L1	22618.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34482066-9	chr1	34481412	34482412	+	890.648132	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16500.0	NM_009355	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61558860-4	chr8	61558348	61559348	+	890.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	32321.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-83547207-2	chr9	83546707	83547707	+	890.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1131.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122780679-2	chr5	122780179	122781179	+	890.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1269.0	NM_145358	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	0.0	0.0	4.0	0.5	15.0	2.5
Merged-chr13-97573271-4	chr13	97572785	97573785	+	890.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046157, intron 2 of 2)	intron (NR_046157, intron 2 of 2)	13285.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0.0	0.0	3.0	0.5	2.5	1.0
Merged-chr9-14066964-4	chr9	14066468	14067468	+	890.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44-int|LTR|ERVK	-209333.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53167096-4	chr18	53166578	53167578	+	890.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-9214.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-76597161-4	chr13	76596540	76597540	+	890.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030174, intron 1 of 20)	intron (NM_030174, intron 1 of 20)	212079.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	0.0	4.0	11.5	6.5	1.0	11.0
Merged-chr17-50513041-4	chr17	50512538	50513538	+	890.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	3491.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	4.5	31.5	16.0	11.5	24.0	12.0
Merged-chr8-69206590-4	chr8	69206042	69207042	+	890.587524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2504.0	NM_001013379	234358.0	Mm.334577	NM_001013379	ENSMUSG00000059897	Zfp930	-	zinc finger protein 930	protein-coding	3.5	3.0	1.0	4.0	6.0	5.5
Merged-chr9-106687498-4	chr9	106686932	106687932	+	890.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030730)	TTS (NM_030730)	-1480.0	NM_001286498	21767.0	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	0.5	4.0	2.0	4.0	8.0	3.5
Merged-chr13-29983728-2	chr13	29983234	29984234	+	890.583374	f0_balb.idr|f0_c57.idr	intron (NM_010093, intron 1 of 6)	intron (NM_010093, intron 1 of 6)	657.0	NM_001289920	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133440654-2	chr4	133440154	133441154	+	890.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39479.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	13.5	6.0	3.0	5.5	15.5	2.0
Merged-chr12-112593390-4	chr12	112592858	112593858	+	890.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198411, intron 1 of 22)	intron (NM_198411, intron 1 of 22)	4574.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-130969244-2	chr7	130968744	130969744	+	890.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019564, intron 3 of 8)	intron (NM_019564, intron 3 of 8)	33041.0	NM_019564	56213.0	Mm.30156	NM_019564	ENSMUSG00000006205	Htra1	AI429470|HTRA|L56|Prss11|RSPP11	HtrA serine peptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49236062-4	chr11	49235562	49236562	+	890.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8129.0	NM_010794	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4777020-4	chr7	4776529	4777529	+	890.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290423, intron 1 of 4)	CpG	1112.0	NM_008350	16156.0	Mm.35814	NM_008350	ENSMUSG00000004371	Il11	IL-11	interleukin 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145096992-4	chr4	145096476	145097476	+	890.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 42 of 69)	intron (NM_001276465, intron 42 of 69)	93690.0	NM_001276502	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139377658-4	chr5	139377149	139378149	+	890.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033147)	promoter-TSS (NR_033147)	-48.0	NM_001362206	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-136678858-3	chr2	136678348	136679348	+	890.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-34602.0	NM_011428	20614.0	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16256156-3	chr7	16255644	16256644	+	890.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001173550, intron 1 of 1)	ID_B1|SINE|B4	3194.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	14.0	57.0	42.5	18.0	60.0	32.5
Merged-chr17-56251650-4	chr17	56251156	56252156	+	890.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5137.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116089200-4	chr11	116088701	116089701	+	890.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2206.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151105428-4	chr1	151104934	151105934	+	890.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32600.0	NR_038011	402734.0	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32640851-4	chr12	32640364	32641364	+	890.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-179471.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.0	13.0	5.0	23.5	4.5	2.5
Merged-chr10-63153821-3	chr10	63153310	63154310	+	890.5277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182992, intron 6 of 19)	intron (NM_182992, intron 6 of 19)	50142.0	NM_182992	68802.0	Mm.259767	NM_182992	ENSMUSG00000020067	Mypn	1110056A04Rik|9830112J03|AI853556|mKIAA4170	myopalladin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-9889825-2	chr10	9889325	9890325	+	890.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081344, intron 2 of 25)	intron (NM_001081344, intron 2 of 25)	11215.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	3.0	3.5	0.0	4.0	13.5	0.5
Merged-chr11-51921120-2	chr11	51920620	51921620	+	890.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-46511.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12459839-6	chr13	12459313	12460313	+	890.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291055)	promoter-TSS (NM_001291055)	-497.0	NM_001291055	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97748343-4	chr7	97747864	97748864	+	890.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10117.0	NM_175105	66333.0	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	3.5	3.5	6.0	0.0	1.0	3.0
Merged-chr6-108611871-4	chr6	108611365	108612365	+	890.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040757, intron 4 of 4)	ORR1E|LTR|ERVL-MaLR	11302.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0.0	1.0	3.0	0.0	3.5	0.0
Merged-chr7-67220066-2	chr7	67219566	67220566	+	890.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131044, exon 2 of 3)	non-coding (NR_131044, exon 2 of 3)	2392.0	NR_131044	76628.0	Mm.384589	NR_131043	ENSMUSG00000097527	1700112J16Rik	-	RIKEN cDNA 1700112J16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-68787911-2	chr2	68787411	68788411	+	890.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-73530.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-154332102-4	chr3	154331583	154332583	+	890.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040387, intron 1 of 2)	intron (NR_040387, intron 1 of 2)	1262.0	NR_040387	99686.0	Mm.38082	NR_040387	ENSMUSG00000093738	AI606473	-	expressed sequence AI606473	ncRNA	2.0	3.0	2.5	0.0	2.5	3.5
Merged-chr8-120669697-2	chr8	120669197	120670197	+	890.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009941, intron 2 of 4)	intron (NM_009941, intron 2 of 4)	1377.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129491473-4	chr6	129490985	129491985	+	890.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301096, intron 1 of 3)	intron (NM_001301096, intron 1 of 3)	15680.0	NM_138648	108078.0	Mm.293626	NM_138648	ENSMUSG00000030162	Olr1	LOX-1|SR-EI|Scare1	oxidized low density lipoprotein (lectin-like) receptor 1	protein-coding	4.0	13.5	5.0	1.5	12.0	8.0
Merged-chr1-82946130-2	chr1	82945630	82946630	+	890.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92318.0	NM_030556	80721.0	Mm.261542	NM_030556	ENSMUSG00000038496	Slc19a3	A230084E24Rik|AI788884|ThTr2	solute carrier family 19, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106703316-2	chr11	106702816	106703816	+	890.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 2 of 14)	ORR1B2|LTR|ERVL-MaLR	11965.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167222288-4	chr2	167221815	167222815	+	890.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008968, intron 4 of 9)	intron (NM_008968, intron 4 of 9)	18222.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40680648-4	chr12	40680106	40681106	+	890.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 12 of 52)	L1MC4|LINE|L1	234553.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-99190801-2	chr13	99190301	99191301	+	890.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	5978.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-123291867-2	chr7	123291367	123292367	+	890.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 17 of 19)	intron (NM_001316713, intron 17 of 19)	77001.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6664604-2	chr19	6664104	6665104	+	890.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121534.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73198490-2	chr14	73197997	73198997	+	890.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 26 of 26)	intron (NM_009029, intron 26 of 26)	8354.0	NR_030459	751541.0		NR_030459	ENSMUSG00000076121	Mir687	Mirn687|mir-687|mmu-mir-687	microRNA 687	ncRNA	5.5	17.5	9.0	0.0	6.0	9.5
Merged-chr11-98342056-2	chr11	98341556	98342556	+	890.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6350.0	NM_144828	19049.0	Mm.45372	NM_144828	ENSMUSG00000061718	Ppp1r1b	AU040756|DARPP-32|Darpp32	protein phosphatase 1, regulatory (inhibitor) subunit 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33956358-3	chr16	33955855	33956855	+	890.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009471, exon 6 of 6)	3' UTR (NM_009471, exon 6 of 6)	10683.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53825596-4	chr11	53825105	53826105	+	890.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 2 of 3)	intron (NR_033332, intron 2 of 3)	33651.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-126553013-2	chr2	126552513	126553513	+	890.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011978)	promoter-TSS (NM_011978)	-11.0	NM_011978	26458.0	Mm.290044	NM_011978	ENSMUSG00000027359	Slc27a2	ACSVL1|FATP2|VLCS|Vlac|Vlacs	solute carrier family 27 (fatty acid transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-44225654-2	chr5	44225154	44226154	+	890.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173764, intron 1 of 13)	intron (NM_173764, intron 1 of 13)	952.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-83982077-2	chr18	83981577	83982577	+	890.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	104485.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122989822-2	chr5	122989312	122990312	+	890.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001003953)	promoter-TSS (NM_001003953)	458.0	NR_045820	109202.0	Mm.30769	NM_175405	ENSMUSG00000056735	A930024E05Rik	-	RIKEN cDNA A930024E05 gene	ncRNA	4.0	16.5	15.0	10.0	48.5	14.5
Merged-chr19-5836955-2	chr19	5836455	5837455	+	890.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131212, exon 1 of 1)	non-coding (NR_131212, exon 1 of 1)	8523.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95894703-2	chr3	95894203	95895203	+	890.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146104, intron 1 of 5)	intron (NM_146104, intron 1 of 5)	782.0	NM_146134	226548.0	Mm.306954	NM_146104	ENSMUSG00000015750	Aph1a	6530402N02Rik|APH-1a	aph1 homolog A, gamma secretase subunit	protein-coding	0.0	0.0	1.0	0.0	1.0	0.0
Merged-chr2-27019252-2	chr2	27018752	27019752	+	890.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029862, intron 5 of 5)	intron (NM_029862, intron 5 of 5)	8746.0	NM_172659	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68457457-2	chr11	68456957	68457957	+	890.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	25332.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45408246-2	chr7	45407746	45408746	+	890.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010596, intron 1 of 1)	B1_Mur1|SINE|Alu	2286.0	NM_010596	16495.0	Mm.12955	NM_010596	ENSMUSG00000038201	Kcna7	Kv1.7	potassium voltage-gated channel, shaker-related subfamily, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-114691237-4	chr9	114690713	114691713	+	890.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146229, intron 2 of 12)	intron (NM_146229, intron 2 of 12)	2382.0	NM_146229	235661.0	Mm.128627	NM_146229	ENSMUSG00000032435	Dync1li1	1110053F02Rik|Dnclic1|LIC-1	dynein cytoplasmic 1 light intermediate chain 1	protein-coding	2.5	0.0	0.5	1.5	0.0	1.0
Merged-chr17-24488345-2	chr17	24487845	24488845	+	890.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027937)	promoter-TSS (NM_027937)	-438.0	NM_001360469	268932.0	Mm.70989	NM_027937	ENSMUSG00000033597	Caskin1	3300002N10Rik|C130061I24|C630036E02Rik|mKIAA1306	CASK interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41478564-2	chr10	41478064	41479064	+	890.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_138315, exon 3 of 24)	exon (NM_138315, exon 3 of 24)	554.0	NM_001358839	171580.0	Mm.290431	NM_138315	ENSMUSG00000019823	Mical1	MICAL|MICAL-1|Nical	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31419212-2	chr15	31418732	31419732	+	890.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	34457.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-27732945-2	chr10	27732445	27733445	+	890.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26|LTR|ERVK	-116003.0	NM_008481	16773.0	Mm.256087	NM_008481	ENSMUSG00000019899	Lama2	5830440B04|dy|mKIAA4087|mer|merosin	laminin, alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99128757-2	chr7	99128257	99129257	+	890.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 1 of 14)	intron (NM_178635, intron 1 of 14)	12387.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0.0	0.0	5.5	2.0	2.0	4.0
Merged-chr13-60684328-3	chr13	60683832	60684832	+	890.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	82121.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	7.0	31.5	29.0	6.0	38.0	33.5
Merged-chr15-40166833-2	chr15	40166333	40167333	+	890.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_155349, intron 2 of 2)	intron (NR_155349, intron 2 of 2)	4226.0	NR_155349	102636151.0	Mm.321976	NR_155349	ENSMUSG00000115367	Gm33301	-	predicted gene, 33301	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64026735-2	chr15	64026235	64027235	+	890.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	-28669.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-55119306-2	chr3	55118806	55119806	+	890.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001144987, intron 2 of 8)	intron (NM_001144987, intron 2 of 8)	7140.0	NM_001144987	229285.0	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|Spart|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103224505-2	chr11	103224005	103225005	+	890.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 13 of 15)	intron (NM_016896, intron 13 of 15)	-6073.0	NM_177801	328019.0	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70648161-2	chr8	70647661	70648661	+	890.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023217, exon 5 of 5)	3' UTR (NM_023217, exon 5 of 5)	11577.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	3.5	25.5	11.5	10.5	2.0	2.5
Merged-chr8-70832534-2	chr8	70832045	70833045	+	890.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7175.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	25.5	51.0	36.0	35.0	79.0	54.5
Merged-chr5-123458265-2	chr5	123457765	123458765	+	890.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133917)	TTS (NM_133917)	23836.0	NM_029594	76399.0	Mm.75049	NM_029594	ENSMUSG00000029437	Il31	1700013B14Rik	interleukin 31	protein-coding	0.0	1.5	0.5	0.0	0.0	0.0
Merged-chr7-112213476-4	chr7	112212968	112213968	+	890.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12368.0	NM_177282	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	1.0	0.5	1.0	1.5	14.0	1.0
Merged-chr5-110109389-2	chr5	110108918	110109918	+	890.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163996)	promoter-TSS (NM_001163996)	-674.0	NM_001163996	675812.0	Mm.442122	NM_001163996	ENSMUSG00000023284	Zfp605	A830023I12Rik	zinc finger protein 605	protein-coding	1.0	9.5	3.5	1.0	4.0	2.0
Merged-chr3-115769001-2	chr3	115768501	115769501	+	890.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53946.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.0	0.0	3.5	2.5	2.0	0.5
Merged-chr17-73106442-2	chr17	73105942	73106942	+	890.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1543.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127634677-4	chr10	127634181	127635181	+	890.4874880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-8305.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	14.5	50.5	23.0	17.0	51.5	23.5
Merged-chr4-133854931-3	chr4	133854415	133855415	+	890.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009097, intron 17 of 21)	intron (NM_009097, intron 17 of 21)	19816.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	7.0	11.0	6.5	8.5	14.5	9.5
Merged-chr1-36123905-4	chr1	36123390	36124390	+	890.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20423.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134094772-4	chr6	134094239	134095239	+	890.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	59039.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	2.0	5.5	0.5	2.5	10.5	0.0
Merged-chr15-81960276-4	chr15	81959737	81960737	+	890.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282041, intron 1 of 5)	intron (NM_001282041, intron 1 of 5)	693.0	NM_001282040	29858.0	Mm.18939	NM_013872	ENSMUSG00000022474	Pmm1	C77612	phosphomannomutase 1	protein-coding	6.0	20.5	21.0	0.0	3.5	9.5
Merged-chr8-70770697-3	chr8	70770208	70771208	+	890.444458	f1_balb.idr|f1_c57bl6.idr	exon (NM_008841, exon 10 of 16)	exon (NM_008841, exon 10 of 16)	-4045.0	NM_023065	65972.0	Mm.30241	NM_023065		Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	0.0	0.5	0.0	0.0	5.0	0.5
Merged-chr1-170305183-3	chr1	170304677	170305677	+	890.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198955, intron 1 of 2)	intron (NM_001198955, intron 1 of 2)	1155.0	NM_001198955	665574.0	Mm.65316	NM_001198955	ENSMUSG00000102752	Gm7694	EG665574	predicted gene 7694	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122520510-4	chr7	122520000	122521000	+	890.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 7 of 16)	intron (NM_001316672, intron 7 of 16)	-151244.0	NM_019430	54376.0	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35135684-4	chr2	35135181	35136181	+	890.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_012018, exon 13 of 44)	exon (NM_012018, exon 13 of 44)	3447.0	NM_001290635	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-186834145-2	chr1	186833592	186834592	+	890.43335	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84734.0	NM_026041	67223.0	Mm.289841	NM_026041	ENSMUSG00000001305	Rrp15	2810430M08Rik|5430437H21Rik	ribosomal RNA processing 15 homolog (S. cerevisiae)	protein-coding	1.5	0.0	0.0	0.0	1.5	0.0
Merged-chr18-23197420-4	chr18	23196943	23197943	+	890.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20153.0	NR_110491	665797.0	Mm.328158	NR_110491		Gm7788	EG665797	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-78014925-4	chr18	78014470	78015470	+	890.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195633, intron 32 of 43)	intron (NM_001195633, intron 32 of 43)	42298.0	NM_001101038	620235.0	Mm.35607	NM_001101038	ENSMUSG00000091055	Siglec15	Cd33l3|EG620235|SIGLEC-I	sialic acid binding Ig-like lectin 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78778645-4	chr15	78778080	78779080	+	890.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130859, intron 17 of 20)	intron (NM_130859, intron 17 of 20)	-5135.0	NM_008595	17305.0	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-69663274-4	chr18	69662799	69663799	+	890.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 15 of 19)	MIR3|SINE|MIR	-262260.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21670391-4	chr10	21669891	21670891	+	890.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20454.0	NR_045843	432436.0	Mm.244553	NM_001004162	ENSMUSG00000056716	Gm5420	EG432436	predicted gene 5420	ncRNA	18.0	34.5	42.5	26.5	53.0	28.5
Merged-chr5-114620459-4	chr5	114619897	114620897	+	890.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38024.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0.5	0.0	0.0	0.0	5.0	7.5
Merged-chr11-22807656-3	chr11	22807134	22808134	+	890.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	52101.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32629916-4	chr11	32629421	32630421	+	890.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12634.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	1.5	18.0	28.5	0.5	17.0	17.0
Merged-chr6-143293849-4	chr6	143293359	143294359	+	890.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027803, intron 3 of 3)	intron (NR_027803, intron 3 of 3)	47971.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33077269-4	chr16	33076776	33077776	+	890.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172823, intron 6 of 16)	intron (NM_172823, intron 6 of 16)	14755.0	NM_172823	239833.0	Mm.131951	NM_172823	ENSMUSG00000022802	Lmln	5330415H22Rik|AI465495	leishmanolysin-like (metallopeptidase M8 family)	protein-coding	11.0	28.0	8.0	12.0	33.5	13.5
Merged-chr11-72042401-4	chr11	72041911	72042911	+	890.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144526)	promoter-TSS (NM_144526)	-91.0	NM_144526	109212.0	Mm.33118	NM_144526	ENSMUSG00000020808	Pimreg	2610008F03Rik|6720460F02Rik|AI115087|CATS|Fam64a	PICALM interacting mitotic regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-98027532-4	chr3	98026986	98027986	+	890.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	13948.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27591947-3	chr17	27591372	27592372	+	890.361084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291046, intron 2 of 4)	intron (NM_001291046, intron 2 of 4)	-26145.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	97.5	233.5	130.5	0.0	4.0	6.5
Merged-chr6-88065300-4	chr6	88064781	88065781	+	890.3583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19192.0	NM_133933	103963.0	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47328976-4	chr17	47328463	47329463	+	890.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 13 of 19)	intron (NM_001097623, intron 13 of 19)	-39924.0	NM_001146212	64657.0	Mm.216250	NM_183086	ENSMUSG00000034729	Mrps10	1110038B19Rik|AW743084|Rpms10	mitochondrial ribosomal protein S10	protein-coding	0.0	0.5	0.5	0.0	0.0	0.5
Merged-chr5-115560531-2	chr5	115560048	115561048	+	890.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007475, intron 2 of 6)	intron (NM_007475, intron 2 of 6)	1081.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	59.5	120.0	55.5	45.5	93.0	101.5
Merged-chr10-79964375-2	chr10	79963875	79964875	+	890.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	4223.0	NM_175450	216156.0	Mm.35828	NM_175450	ENSMUSG00000035754	Wdr18	2310012I10Rik|AU044733|AW122032	WD repeat domain 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167930012-2	chr2	167929512	167930512	+	890.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2315.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34366703-2	chr17	34366211	34367211	+	890.333374	f0_c57.idr|f1_c57bl6.idr	intron (NM_079835, intron 8 of 8)	intron (NM_079835, intron 8 of 8)	-10421.0	NM_001111094	100038862.0	Mm.440426	NM_201405	ENSMUSG00000062638	Btnl1	Btnl3|Gm316|Gm33	butyrophilin-like 1	protein-coding	9.5	14.5	8.5	3.0	1.0	3.5
Merged-chr5-135939584-2	chr5	135939081	135940081	+	890.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4940.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	2.0	4.5	1.5	5.5	2.5	7.0
Merged-chr9-102636738-3	chr9	102636233	102637233	+	890.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10437.0	NM_181394	69010.0	Mm.2000	NM_181394	ENSMUSG00000035048	Anapc13	1810004D07Rik|APC13|SWM1	anaphase promoting complex subunit 13	protein-coding	1.5	0.0	5.5	0.0	0.0	0.0
Merged-chr3-81961477-3	chr3	81960996	81961996	+	890.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019911, exon 10 of 12)	exon (NM_019911, exon 10 of 12)	14232.0	NM_019911	56720.0	Mm.258622	NM_019911	ENSMUSG00000028011	Tdo2	AA407491|TDO|TO|chky	tryptophan 2,3-dioxygenase	protein-coding	14.5	0.0	1.0	3.0	2.0	4.0
Merged-chr9-86449763-3	chr9	86449253	86450253	+	890.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027394, intron 2 of 9)	intron (NM_027394, intron 2 of 9)	15163.0	NM_027394	70348.0	Mm.53469	NM_027394	ENSMUSG00000032415	Ube2cbp	2610018I03Rik|Ube3d	ubiquitin-conjugating enzyme E2C binding protein	protein-coding	2.0	1.0	5.0	1.0	4.0	2.5
Merged-chr3-104793451-3	chr3	104792953	104793953	+	890.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007484, intron 4 of 4)	URR1A|DNA|hAT-Charlie	4419.0	NM_001291859	11853.0	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25362846-3	chr8	25362372	25363372	+	890.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56602.0	NR_040352	74489.0	Mm.256468	NR_040352	ENSMUSG00000110140	5430421F17Rik	-	RIKEN cDNA 5430421F17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143906624-1	chr7	143906124	143907124	+	890.3333130000001	f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-26491.0	NR_105830	102465217.0		NR_105830	ENSMUSG00000099321	Mir6404	Gm28014|mmu-mir-6404	microRNA 6404	ncRNA	14.0	20.5	25.0	6.5	0.5	2.5
Merged-chr18-82861719-3	chr18	82861235	82862235	+	890.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	5838.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98720440-4	chr7	98719946	98720946	+	890.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17199.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62558007-3	chr10	62557538	62558538	+	890.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028197)	TTS (NM_028197)	20419.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-68180936-1	chr18	68180436	68181436	+	890.3333130000001	f0_balb.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-47010.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	7.0	1.0	5.5	20.0	9.5	16.5
Merged-chr2-27268374-2	chr2	27267874	27268874	+	890.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 27 of 29)	intron (NR_133905, intron 27 of 29)	-21071.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67960113-3	chr10	67959603	67960603	+	890.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0-int|LTR|ERVL-MaLR	13605.0	NR_152797	75067.0	Mm.416933	NR_152797	ENSMUSG00000112899	4930521O17Rik	-	RIKEN cDNA 4930521O17 gene	ncRNA	6.0	7.5	17.0	1.5	0.0	0.0
Merged-chr10-77032644-3	chr10	77032116	77033116	+	890.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199271)	promoter-TSS (NM_001199271)	-123.0	NM_001199271	20509.0	Mm.265060	NM_031196	ENSMUSG00000001436	Slc19a1	AI323572|RFC|RFC-1|RFC1	solute carrier family 19 (folate transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105347190-4	chr8	105346735	105347735	+	890.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	735.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95156956-3	chr4	95156455	95157455	+	890.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104733.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139344272-4	chr5	139343808	139344808	+	890.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197980, intron 1 of 2)	intron (NM_197980, intron 1 of 2)	858.0	NM_197980	68033.0	Mm.261064	NM_197980	ENSMUSG00000045438	Cox19	1810074D02Rik|2810437L13Rik	cytochrome c oxidase assembly protein 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101821776-4	chr7	101821261	101822261	+	890.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001122739)	TTS (NM_001122739)	3448.0	NM_008887	11859.0	Mm.5028	NM_008887	ENSMUSG00000007946	Phox2a	Arix|Phox2|Pmx2|Pmx2a|Px2a	paired-like homeobox 2a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25067507-4	chr8	25067017	25068017	+	890.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 3 of 11)	intron (NM_031257, intron 3 of 11)	-28555.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	0.0	9.0	6.0	5.0	9.5	11.0
Merged-chr4-89128182-4	chr4	89127666	89128666	+	890.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151607)	promoter-TSS (NR_151607)	60.0	NR_151607	102637941.0	Mm.366358	NR_151607		Gm12602	-	predicted gene 12602	ncRNA	2.0	1.0	4.5	4.5	0.0	5.5
Merged-chr12-111944075-4	chr12	111943596	111944596	+	890.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_029464, intron 1 of 2)	intron (NR_029464, intron 1 of 2)	386.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-43555763-4	chr2	43555249	43556249	+	890.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289593, intron 1 of 12)	intron (NM_001289593, intron 1 of 12)	424.0	NM_027552	70789.0	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-125391152-2	chr10	125390652	125391652	+	890.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62189.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67839111-4	chr5	67838609	67839609	+	890.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	MTD|LTR|ERVL-MaLR	8322.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	1.5	34.5	11.5	1.5	34.5	9.5
Merged-chr19-6278897-4	chr19	6278429	6279429	+	890.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 1 of 4)	intron (NM_010119, intron 1 of 4)	2033.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8708304-3	chr11	8707803	8708803	+	890.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43768.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181212694-2	chr2	181212242	181213242	+	890.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_011481, exon 1 of 8)	exon (NM_011481, exon 1 of 8)	429.0	NM_011481	20811.0	Mm.4752	NM_011481	ENSMUSG00000027579	Srms	A230069J08Rik|srm	src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-99298585-4	chr14	99298085	99299085	+	890.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009769)	promoter-TSS (NM_009769)	-106.0	NM_009769	12224.0	Mm.30262	NM_009769	ENSMUSG00000005148	Klf5	4930520J07Rik|Bteb2|CKLF|IKLF	Kruppel-like factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141025632-4	chr7	141025126	141026126	+	890.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR42|LTR|ERVK	-8734.0	NM_001033632	213002.0	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139299655-2	chr7	139299155	139300155	+	890.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51173.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-36470763-2	chr3	36470263	36471263	+	890.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009673, intron 2 of 12)	PB1D7|SINE|Alu	4761.0	NR_105976	102466786.0		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-34336416-4	chr15	34335919	34336919	+	890.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358780, intron 2 of 18)	intron (NM_001358780, intron 2 of 18)	21453.0	NM_001256161	77358.0	Mm.402759	NM_001256161	ENSMUSG00000094447	9430069I07Rik	-	RIKEN cDNA 9430069I07 gene	protein-coding	0.0	0.0	1.0	0.0	2.5	1.0
Merged-chr19-53536310-3	chr19	53535813	53536813	+	890.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085390, intron 2 of 3)	intron (NM_001085390, intron 2 of 3)	6995.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166304762-3	chr2	166304275	166305275	+	890.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30867.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	6.0	39.0	21.5	3.0	6.0	18.0
Merged-chr11-72466473-4	chr11	72465974	72466974	+	890.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153060, intron 2 of 12)	intron (NM_153060, intron 2 of 12)	8553.0	NM_001276383	216892.0	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5508064-4	chr6	5507530	5508530	+	890.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11752.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153240862-5	chr2	153240354	153241354	+	890.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080463)	promoter-TSS (NM_080463)	504.0	NM_018807	54711.0	Mm.103199	NM_018807	ENSMUSG00000051413	Plagl2	AU018672|AW552839|mKIAA0198	pleiomorphic adenoma gene-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134919845-4	chr4	134919347	134920347	+	890.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3778.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-110945673-2	chr13	110945173	110946173	+	890.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41827.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25264371-3	chr8	25263869	25264869	+	890.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	41901.0	NR_040352	74489.0	Mm.256468	NR_040352	ENSMUSG00000110140	5430421F17Rik	-	RIKEN cDNA 5430421F17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55960237-4	chr4	55959737	55960737	+	890.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-427762.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124049675-2	chr5	124049167	124050167	+	890.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17407.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	106.0	240.5	156.5	59.0	170.0	120.0
Merged-chr17-26233096-3	chr17	26232603	26233603	+	890.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	B3|SINE|B2	11139.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	2.5	3.5	1.5	1.0	5.0	2.0
Merged-chr17-81705407-4	chr17	81704874	81705874	+	890.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	33013.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-67712529-2	chr14	67712029	67713029	+	890.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175384, intron 4 of 14)	intron (NM_175384, intron 4 of 14)	3081.0	NM_001110162	108912.0	Mm.33831	NM_175384	ENSMUSG00000048922	Cdca2	2610311M19Rik|AI586158	cell division cycle associated 2	protein-coding	2.5	0.0	1.0	2.5	0.0	1.0
Merged-chr16-33568764-4	chr16	33568238	33569238	+	890.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 4 of 11)	intron (NM_001083902, intron 4 of 11)	50143.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25717274-2	chr15	25716774	25717774	+	890.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 4 of 40)	intron (NM_019472, intron 4 of 40)	-35932.0	NM_001353142	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	1.0	1.0	0.0	0.0	0.5
Merged-chr10-127555933-4	chr10	127555412	127556412	+	890.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 54 of 88)	intron (NM_008512, intron 54 of 88)	-21353.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-80335898-3	chr8	80335410	80336410	+	890.133301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-158135.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100611847-4	chr11	100611384	100612384	+	890.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019795, intron 1 of 13)	intron (NM_019795, intron 1 of 13)	8284.0	NM_019795	56354.0	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4971013-4	chr18	4970530	4971530	+	890.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75559.0	NM_153153	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-52283779-4	chr12	52283287	52284287	+	890.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029760, intron 7 of 10)	MTC|LTR|ERVL-MaLR	186041.0	NM_029760	76826.0	Mm.244781	NM_029760	ENSMUSG00000035142	Nubpl	2410170E07Rik	nucleotide binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98897277-2	chr10	98896777	98897777	+	890.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17365.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6361696-2	chr19	6361196	6362196	+	890.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-1994.0	NM_011750	22668.0	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-51470985-4	chr18	51470476	51471476	+	890.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	353078.0	NM_001081224	71373.0	Mm.63546	NM_001081224	ENSMUSG00000073565	Prr16	5430406M13Rik|AI607429	proline rich 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79946192-4	chr15	79945734	79946734	+	890.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13588.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	1.0	7.5	2.5	12.5	0.0	7.0
Merged-chr9-47625920-7	chr9	47625369	47626369	+	890.119019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	95517.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	85.5	157.5	175.5	98.0	153.5	172.5
Merged-chr2-118374025-4	chr2	118373490	118374490	+	890.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201367)	promoter-TSS (NM_201367)	-571.0	NM_201367	381413.0	Mm.70979	NM_201367	ENSMUSG00000040133	Gpr176	Gm1012	G protein-coupled receptor 176	protein-coding	0.0	5.0	2.5	4.5	2.0	4.0
Merged-chr17-31002780-4	chr17	31002277	31003277	+	890.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177465, intron 19 of 21)	intron (NM_177465, intron 19 of 21)	48094.0	NM_177465	52020.0	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	11.0	41.0	27.0	4.0	41.5	30.0
Merged-chr19-12815391-4	chr19	12814831	12815831	+	890.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134152, intron 3 of 8)	Lx2B|LINE|L1	16752.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	2.0	16.5	7.0	7.0	6.5	14.0
Merged-chr5-135956538-5	chr5	135956016	135957016	+	890.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17960.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	28.0	29.0	22.5	35.0	76.5	35.0
Merged-chr17-80801511-4	chr17	80801004	80802004	+	890.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73479.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34030690-4	chr11	34030184	34031184	+	890.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-16244.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45118303-3	chr2	45117795	45118795	+	890.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355288)	promoter-TSS (NM_001355288)	-853.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-46975152-3	chr13	46974644	46975644	+	890.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12B|LTR|ERVK	39706.0	NM_175340	105193.0	Mm.25593	NM_175340	ENSMUSG00000044231	Nhlrc1	AI505271|B230309E09Rik|EPM2B	NHL repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-68145010-3	chr7	68144511	68145511	+	890.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	119222.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122149574-3	chr2	122149073	122150073	+	890.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009735, intron 1 of 3)	RSINE1|SINE|B4	1886.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	27.5	73.0	34.5	21.5	76.0	47.0
Merged-chr14-56042353-4	chr14	56041879	56042879	+	890.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008571, intron 1 of 4)	intron (NM_008571, intron 1 of 4)	256.0	NM_008571	17225.0	Mm.4409	NM_008571	ENSMUSG00000022226	Mcpt2	MMCP-2|Mcp-2	mast cell protease 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6376741-4	chr4	6376224	6377224	+	890.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	11044.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	1.5	3.0	13.0	3.5	8.0	14.0
Merged-chr15-58343346-3	chr15	58342842	58343842	+	890.022217	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027211, intron 8 of 8)	intron (NM_027211, intron 8 of 8)	-19173.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	6.0	7.5	5.0	6.0	20.0	9.0
Merged-chr10-117377614-2	chr10	117377114	117378114	+	890.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310609)	promoter-TSS (NM_001310609)	-641.0	NM_001310609	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	1.5	11.5	5.5	1.5	9.0	5.0
Merged-chr9-116093079-2	chr9	116092579	116093579	+	890.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 5 of 6)	intron (NM_029575, intron 5 of 6)	82284.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr7-138398605-3	chr7	138398125	138399125	+	890.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183289)	promoter-TSS (NM_183289)	-895.0	NM_183289	70571.0	Mm.334297	NM_183289	ENSMUSG00000091002	Tcerg1l	5730476P14Rik	transcription elongation regulator 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-42964730-1	chr4	42964230	42965230	+	890.0	f1_c57bl6.idr	Intergenic	Intergenic	-5216.0	NM_026088	67317.0	Mm.478018	NM_026088	ENSMUSG00000028451	1700022I11Rik	-	RIKEN cDNA 1700022I11 gene	protein-coding	10.5	1.5	6.0	1.0	1.5	3.0
Merged-chr3-142314249-3	chr3	142313748	142314748	+	890.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019809, intron 4 of 7)	intron (NM_019809, intron 4 of 7)	77602.0	NM_022554	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	1.0	3.0	0.5	5.5	0.5	0.0
Merged-chr7-96418530-1	chr7	96418030	96419030	+	890.0	f0_balb.idr	intron (NM_011858, intron 2 of 32)	intron (NM_011858, intron 2 of 32)	-76566.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr10-127661339-2	chr10	127660839	127661839	+	890.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009284)	TTS (NM_009284)	5364.0	NM_001122895	17937.0	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36624938-2	chr16	36624438	36625438	+	890.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 2 of 7)	intron (NM_019388, intron 2 of 7)	41139.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80163241-3	chr10	80162796	80163796	+	890.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-4543.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40063444-2	chr10	40062944	40063944	+	890.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 3 of 5)	intron (NM_001114332, intron 3 of 5)	-38176.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-9708806-2	chr10	9708306	9709306	+	890.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	24084.0	NR_038036	620417.0	Mm.378085	NR_038036	ENSMUSG00000111901	Gm6150	-	predicted gene 6150	ncRNA	0.0	0.0	0.0	1.0	2.5	0.0
Merged-chr1-53840364-2	chr1	53839864	53840864	+	890.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 22 of 28)	intron (NM_001001883, intron 22 of 28)	-9060.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166439902-2	chr2	166439402	166440402	+	890.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7549.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33827763-2	chr17	33827263	33828263	+	890.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023202, intron 2 of 3)	intron (NM_023202, intron 2 of 3)	3118.0	NR_103514	66416.0	Mm.29513	NM_023202	ENSMUSG00000041881	Ndufa7	14.5kDa|2400007M02Rik|CI-B14.5a	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a)	protein-coding	1.0	0.0	0.5	0.0	0.0	1.5
Merged-chr14-31471583-2	chr14	31471083	31472083	+	890.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23175.0	NM_001359850	67011.0	Mm.291731	NM_025907	ENSMUSG00000021891	Mettl6	1600013P15Rik|AI467521|AU020711	methyltransferase like 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-6382924-2	chr1	6382424	6383424	+	890.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195732, intron 1 of 4)	CpG	23593.0	NM_001195732	620393.0	Mm.388992	NM_001195732	ENSMUSG00000087247	Alkal1	EG620393|Fam150a	ALK and LTK ligand 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50154398-4	chr11	50153887	50154887	+	890.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029745, intron 10 of 20)	L1MB3|LINE|L1	-20464.0	NM_026543	68067.0	Mm.40828	NM_026543	ENSMUSG00000020381	Mrnip	2900016G09Rik|3010026O09Rik|AI851514|AW475975	MRN complex interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-47073300-2	chr7	47072800	47073800	+	890.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9924.0	NR_106023	102465639.0		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98942207-2	chr13	98941707	98942707	+	890.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15823.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	3.0	6.0	6.5	1.5	1.5	6.0
Merged-chr11-54524740-2	chr11	54524240	54525240	+	890.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 1 of 28)	L2a|LINE|L2	1895.0	NM_001252496	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-3558594-4	chr17	3558093	3559093	+	890.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146074)	promoter-TSS (NM_146074)	769.0	NR_045302	68230.0	Mm.431352	NR_045302		1700102H20Rik	-	RIKEN cDNA 1700102H20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105599494-2	chr5	105598994	105599994	+	890.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	80023.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21027924-2	chr10	21027426	21028426	+	890.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358561, intron 17 of 22)	intron (NM_001358561, intron 17 of 22)	-12894.0	NM_001177776	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	2.5	17.5	4.5	3.0	17.5	4.5
Merged-chr7-111025468-2	chr7	111024968	111025968	+	890.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3483.0	NM_009431	22083.0	Mm.255858	NM_009431	ENSMUSG00000005609	Ctr9	AA409336|Sh2bp1|Tsbp|Tsp|mKIAA0155	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45237678-2	chr9	45237178	45238178	+	890.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 1 of 4)	Lx8|LINE|L1	29029.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	16.5	23.0	5.5	9.0	9.0	14.0
Merged-chr3-78314552-4	chr3	78314056	78315056	+	890.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	830331.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155991748-2	chr4	155991248	155992248	+	890.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_080445, exon 1 of 1)	exon (NM_080445, exon 1 of 1)	930.0	NM_080445	117592.0	Mm.440185	NM_080445	ENSMUSG00000050796	B3galt6	BB129894|GalTII	UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	protein-coding	7.5	5.0	5.5	10.0	7.0	6.0
Merged-chr7-16327890-2	chr7	16327390	16328390	+	890.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001285891, exon 9 of 10)	exon (NM_001285891, exon 9 of 10)	18307.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	3.0	0.0	0.0	0.5	0.0	1.0
Merged-chr8-117517965-2	chr8	117517465	117518465	+	890.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 2 of 32)	intron (NM_172285, intron 2 of 32)	19690.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28716783-4	chr7	28716255	28717255	+	890.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015796)	promoter-TSS (NM_015796)	-27.0	NM_001310687	50760.0	Mm.358659	NM_015796	ENSMUSG00000030598	Fbxo17	Fbg4|Fbx17|Fbxo26	F-box protein 17	protein-coding	10.0	12.5	14.0	18.5	25.5	22.0
Merged-chr7-29039275-2	chr7	29038775	29039775	+	890.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009109, intron 87 of 105)	MLT1K|LTR|ERVL-MaLR	44419.0	NR_035489	100316710.0		NR_035489	ENSMUSG00000089219	Mir1963	mir-1963|mmu-mir-1963	microRNA 1963	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4044348-3	chr19	4043854	4044854	+	890.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-2133.0	NM_181796	14869.0	Mm.441542	NM_181796	ENSMUSG00000038155	Gstp2	GSTpiA|Gst-3|Gst3	glutathione S-transferase, pi 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61301502-3	chr14	61301004	61302004	+	890.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033788, intron 1 of 2)	RMER4B|LTR|ERVK	3830.0	NR_033788	67355.0	Mm.193728	NR_033788	ENSMUSG00000101505	1700109G14Rik	1700126G13Rik	RIKEN cDNA 1700109G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-52330760-2	chr10	52330260	52331260	+	890.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	51364.0	NM_053187	94221.0	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-60733092-3	chr14	60732597	60733597	+	890.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001310594, exon 1 of 10)	5' UTR (NM_001310594, exon 1 of 10)	193.0	NM_001310594	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	0.0	0.0	3.0	0.0	0.0	1.5
Merged-chr17-49432545-4	chr17	49432042	49433042	+	890.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020042, intron 1 of 10)	intron (NM_020042, intron 1 of 10)	4178.0	NM_020042	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	0.0	5.5	5.5	0.0	4.0	2.5
Merged-chr7-123379237-2	chr7	123378737	123379737	+	890.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025304, intron 1 of 10)	MIR|SINE|MIR	1255.0	NM_025304	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89101930-2	chr15	89101430	89102430	+	890.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163319, intron 19 of 24)	intron (NM_001163319, intron 19 of 24)	12892.0	NM_027905	223776.0	Mm.44763	NM_027905	ENSMUSG00000035757	Selenoo	1300018J18Rik|Selo	selenoprotein O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-21405097-1	chr12	21404597	21405597	+	890.0	f1_balb.idr	intron (NM_011739, intron 1 of 4)	intron (NM_011739, intron 1 of 4)	12339.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	9.0	50.5	31.0	14.0	6.0	31.5
Merged-chr10-123062209-2	chr10	123061709	123062709	+	890.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163024, intron 1 of 34)	intron (NM_001163024, intron 1 of 34)	14296.0	NM_001163024	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128467718-4	chr2	128467207	128468207	+	890.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38356.0	NR_028590	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0.0	4.0	17.0	2.0	3.0	0.0
Merged-chr8-73351766-2	chr8	73351266	73352266	+	890.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317391, intron 1 of 15)	intron (NM_001317391, intron 1 of 15)	1774.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-14641930-3	chr19	14641428	14642428	+	890.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43745.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26120375-2	chr17	26119903	26120903	+	890.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_021793, exon 10 of 13)	exon (NM_021793, exon 10 of 13)	-3100.0	NM_024227	68611.0	Mm.273102	NM_024227	ENSMUSG00000024181	Mrpl28	1110015G04Rik|L28mt|MAAT1|MRP-L28|p15	mitochondrial ribosomal protein L28	protein-coding	1.5	1.5	4.0	3.0	5.5	2.5
Merged-chr10-94575184-2	chr10	94574684	94575684	+	890.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168684)	promoter-TSS (NM_001168684)	-73.0	NM_001168684	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50858150-2	chr9	50857650	50858650	+	890.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286553, intron 2 of 16)	B3|SINE|B2	1226.0	NM_001286553	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	1.0	0.0	0.0	2.5	0.0	0.5
Merged-chr2-91944380-4	chr2	91943880	91944880	+	890.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_105965)	TTS (NR_105965)	550.0	NR_105965	102465604.0		NR_105965	ENSMUSG00000098651	Mir6999	Gm27673|mmu-mir-6999	microRNA 6999	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96328887-4	chr15	96328377	96329377	+	889.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175251, intron 3 of 20)	intron (NM_175251, intron 3 of 20)	41355.0	NM_175251	77044.0	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|BAF200|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100430142-4	chr7	100429631	100430631	+	889.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001017985, exon 21 of 33)	exon (NM_001017985, exon 21 of 33)	-42860.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122280655-7	chr5	122280111	122281111	+	889.964294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3787.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131934737-4	chr1	131934244	131935244	+	889.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175294, exon 7 of 7)	3' UTR (NM_175294, exon 7 of 7)	24286.0	NM_175294	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95713449-4	chr11	95712963	95713963	+	889.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045780)	promoter-TSS (NR_045780)	-709.0	NR_045780	432396.0	Mm.426849	NR_045780	ENSMUSG00000086191	Zfp652os	1110035M17Rik	zinc finger protein 652, opposite strand	ncRNA	3.0	17.0	3.5	3.0	17.0	3.5
Merged-chr15-101105584-4	chr15	101105088	101106088	+	889.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10167.0	NM_144790	208258.0	Mm.152952	NM_144790	ENSMUSG00000047034	Ankrd33	A930021G21Rik|Panky|Panky-a	ankyrin repeat domain 33	protein-coding	10.0	17.5	4.5	1.0	7.0	12.0
Merged-chr8-67986704-3	chr8	67986206	67987206	+	889.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12132.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120623153-3	chr2	120622649	120623649	+	889.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13554.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	0.0	0.0	1.5	0.0	2.0	0.0
Merged-chr6-59022834-4	chr6	59022338	59023338	+	889.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153574, intron 1 of 17)	intron (NM_153574, intron 1 of 17)	1664.0	NM_153574	58909.0	Mm.28813	NM_153574	ENSMUSG00000037709	Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123253036-2	chr9	123252537	123253537	+	889.9166869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7752.0	NM_001002267	72309.0	Mm.8569	NM_001002267	ENSMUSG00000054871	Tmem158	2310037P21Rik|Ris1	transmembrane protein 158	protein-coding	3.0	0.0	1.0	0.0	3.5	2.5
Merged-chr3-9403019-4	chr3	9402528	9403528	+	889.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015499)	promoter-TSS (NR_015499)	-50.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	0.5	10.5	6.0	4.0	2.5	5.5
Merged-chr6-34880766-2	chr6	34880266	34881266	+	889.900024	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001013366, exon 15 of 15)	3' UTR (NM_001013366, exon 15 of 15)	-2701.0	NM_001135611	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143065378-3	chr5	143064884	143065884	+	889.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	47636.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-58405540-3	chr10	58405032	58406032	+	889.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359116, intron 2 of 9)	intron (NM_001359116, intron 2 of 9)	11159.0	NM_001346676	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125271712-4	chr5	125271219	125272219	+	889.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69375.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85842140-4	chr11	85841620	85842620	+	889.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009324)	TTS (NM_009324)	9505.0	NM_009324	21385.0	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-21202063-4	chr2	21201557	21202557	+	889.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027728, intron 1 of 4)	intron (NM_027728, intron 1 of 4)	3308.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105714361-4	chr8	105713870	105714870	+	889.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6081.0	NM_027655	71046.0	Mm.280888	NM_027655	ENSMUSG00000013158	4933405L10Rik	-	RIKEN cDNA 4933405L10 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45231507-5	chr14	45231000	45232000	+	889.8599849999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027518, intron 1 of 6)	intron (NM_027518, intron 1 of 6)	11783.0	NM_027518	70713.0	Mm.343793	NM_027518	ENSMUSG00000049092	Gpr137c	6330416L11Rik|Gm908|TM7SF1L2	G protein-coupled receptor 137C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79161301-4	chr11	79160900	79161900	+	889.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-14927.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48097477-2	chr17	48096977	48097977	+	889.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7099.0	NR_110485	320638.0	Mm.404482	NR_110485		A730006G06Rik	-	RIKEN cDNA A730006G06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40191268-2	chr9	40190768	40191768	+	889.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1048.0	NR_153114	80902.0	Mm.132196	NM_030713	ENSMUSG00000025602	Zfp202	C130037E22Rik|Znf202	zinc finger protein 202	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59415516-2	chr4	59415016	59416016	+	889.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 3 of 16)	intron (NM_001163288, intron 3 of 16)	23117.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114775558-2	chr5	114775058	114776058	+	889.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027872)	promoter-TSS (NR_027872)	418.0	NM_026718	68420.0	Mm.275554	NM_026718	ENSMUSG00000041870	Ankrd13a	1100001D10Rik|ANKRD13|AU046136	ankyrin repeat domain 13a	protein-coding	12.0	0.0	2.5	17.0	0.0	0.5
Merged-chr7-72306522-3	chr7	72306063	72307063	+	889.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024703)	promoter-TSS (NM_001024703)	32.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119173008-3	chr2	119172502	119173502	+	889.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177157)	TTS (NM_177157)	-1507.0	NM_001039223	623781.0	Mm.389344	NM_001039223	ENSMUSG00000055926	Gm14137	-	predicted gene 14137	protein-coding	7.0	4.0	0.5	4.0	1.0	3.5
Merged-chr11-96982517-4	chr11	96981968	96982968	+	889.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4780.0	NM_001080964	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0.0	0.0	0.5	0.0	0.0	2.5
Merged-chr19-32384931-4	chr19	32384430	32385430	+	889.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 1 of 9)	intron (NM_144792, intron 1 of 9)	3119.0	NM_001362423	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	8.5	7.5	16.0	5.0	11.0	10.0
Merged-chr7-78890854-4	chr7	78890342	78891342	+	889.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2565.0	NR_029826	723884.0		NR_029826	ENSMUSG00000065609	Mir7-2	Mir7a2|Mirn7-2|mir-7a-2|mir-7a2|mmu-mir-7-2|mmu-mir-7a2	microRNA 7-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-28899043-3	chr6	28898593	28899593	+	889.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67346.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123357943-3	chr8	123357457	123358457	+	889.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172287, intron 6 of 14)	intron (NM_172287, intron 6 of 14)	-15754.0	NM_001359076	66855.0	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-99521317-5	chr6	99520808	99521808	+	889.7666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347345)	promoter-TSS (NM_001347345)	-315.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27397772-4	chr7	27397267	27398267	+	889.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032610, intron 18 of 35)	intron (NM_032610, intron 18 of 35)	-1214.0	NM_001199236	80297.0	Mm.459123	NM_032610	ENSMUSG00000011751	Sptbn4	1700022P15Rik|5830426A08Rik|ROSA62|SpbIV|Spnb4|dyn|lnd|nmf261|nmf379|qv	spectrin beta, non-erythrocytic 4	protein-coding	0.0	2.5	0.5	0.0	2.0	0.0
Merged-chr16-4960611-4	chr16	4960109	4961109	+	889.7625119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028301, intron 1 of 16)	intron (NM_028301, intron 1 of 16)	3628.0	NM_028301	72615.0	Mm.290628	NM_028301	ENSMUSG00000022515	Anks3	2700067D09Rik|C81345|mKIAA1977	ankyrin repeat and sterile alpha motif domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-100391850-4	chr9	100391331	100392331	+	889.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	94642.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	0.0	0.0	1.0	0.0	3.5	4.0
Merged-chr7-25781633-4	chr7	25781159	25782159	+	889.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 4 of 19)	intron (NM_009465, intron 4 of 19)	7074.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8905653-4	chr17	8905185	8906185	+	889.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347321, intron 2 of 21)	intron (NM_001347321, intron 2 of 21)	55700.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101406516-2	chr7	101406016	101407016	+	889.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 29 of 33)	intron (NM_001040111, intron 29 of 33)	12128.0	NM_198096	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5436180-4	chr2	5435678	5436678	+	889.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030601, intron 1 of 1)	intron (NR_030601, intron 1 of 1)	56788.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35250028-2	chr17	35249511	35250511	+	889.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_019693, intron 6 of 10)	intron (NM_019693, intron 6 of 10)	-1278.0	NR_106169	102465886.0		NR_106169	ENSMUSG00000098269	Mir8094	Gm27513|mmu-mir-8094	microRNA 8094	ncRNA	4.5	17.0	6.0	0.0	9.0	4.5
Merged-chr16-10873864-4	chr16	10873382	10874382	+	889.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38823.0	NM_001162932	223970.0	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43672285-4	chr4	43671774	43672774	+	889.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355718, intron 1 of 11)	intron (NM_001355718, intron 1 of 11)	3303.0	NM_001355718	242409.0	Mm.171489	NM_001085508	ENSMUSG00000078716	Tmem8b	4930500O05Rik	transmembrane protein 8B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27614231-4	chr3	27613660	27614660	+	889.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 4 of 26)	intron (NM_001356953, intron 4 of 26)	-29165.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11500755-4	chr2	11500261	11501261	+	889.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	1329.0	NM_001177754	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118161314-2	chr11	118160814	118161814	+	889.6999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32095.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122265245-2	chr5	122264745	122265745	+	889.6875	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039153)	promoter-TSS (NM_001039153)	-785.0	NM_001039153	654470.0	Mm.28804	NM_001039153	ENSMUSG00000038593	Tctn1	G730031O11Rik|Tect1	tectonic family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148790604-3	chr5	148790101	148791101	+	889.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	12638.0	NR_131106	78015.0	Mm.243839	NR_131106	ENSMUSG00000085740	4930505K14Rik	-	RIKEN cDNA 4930505K14 gene	ncRNA	0.0	12.0	6.5	0.0	1.0	1.5
Merged-chr2-45239932-3	chr2	45239415	45240415	+	889.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122473.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106762317-3	chr11	106761830	106762830	+	889.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073165, intron 6 of 9)	L1MB3|LINE|L1	11104.0	NM_001033435	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151339046-4	chr1	151338564	151339564	+	889.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5422.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32981583-3	chr2	32981107	32982107	+	889.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151460, intron 2 of 8)	CpG-8008	476.0	NR_151461	56017.0	Mm.305754	NM_019488	ENSMUSG00000026791	Slc2a8	D2Ertd44e|GLUT8|GlutX1	solute carrier family 2, (facilitated glucose transporter), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10417501-3	chr16	10417006	10418006	+	889.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011955, intron 3 of 10)	intron (NM_011955, intron 3 of 10)	5568.0	NM_011955	26425.0	Mm.29037	NM_011955	ENSMUSG00000022503	Nubp1	-	nucleotide binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145354069-3	chr4	145353562	145354562	+	889.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38915.0	NM_009401	21941.0	Mm.12810	NM_009401	ENSMUSG00000028602	Tnfrsf8	Cd30|D1S166E|Ki|Ki-1	tumor necrosis factor receptor superfamily, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-186708922-4	chr1	186708425	186709425	+	889.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2936.0	NM_001329107	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127135459-3	chr2	127135019	127136019	+	889.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-1565.0	NM_144818	215387.0	Mm.29786	NM_144818	ENSMUSG00000034906	Ncaph	A730011O11Rik|Brrn1|CAP-H|HCAP-H|mCAP-H	non-SMC condensin I complex, subunit H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148050577-3	chr2	148050083	148051083	+	889.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3614.0	NM_010446	15376.0	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40744399-3	chr19	40743912	40744912	+	889.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	84642.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	3.5	1.0	0.0	0.0	0.0	6.0
Merged-chr1-170967704-4	chr1	170967202	170968202	+	889.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077189, intron 3 of 7)	intron (NM_001077189, intron 3 of 7)	8369.0	NM_010187	14130.0	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-112369184-3	chr7	112368682	112369682	+	889.666626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027587, intron 1 of 9)	intron (NM_027587, intron 1 of 9)	874.0	NM_027587	100504195.0	Mm.291129	NM_027587	ENSMUSG00000030771	Micalcl	4921517J23Rik	MICAL C-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-31032324-2	chr8	31031824	31032824	+	889.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57203.0	NM_025869	66959.0	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding	0.0	0.5	0.0	0.0	0.0	6.0
Merged-chr4-3786878-3	chr4	3786370	3787370	+	889.6555789999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 12 of 12)	intron (NM_001111096, intron 12 of 12)	48785.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0.0	8.0	4.0	2.5	3.0	1.5
Merged-chr10-20349670-4	chr10	20349162	20350162	+	889.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027930, intron 2 of 6)	MTC|LTR|ERVL-MaLR	1843.0	NM_027930	71804.0	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	0.0	1.5	5.5	2.0	15.0	14.0
Merged-chr19-32681099-4	chr19	32680599	32681599	+	889.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026487, intron 8 of 9)	intron (NM_026487, intron 8 of 9)	31199.0	NM_026487	67979.0	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-46012127-4	chr10	46011646	46012646	+	889.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	204442.0	NR_040624	320363.0	Mm.123343	NR_040624	ENSMUSG00000110874	D030045P18Rik	-	RIKEN cDNA D030045P18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19456158-2	chr7	19455658	19456658	+	889.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_172279, intron 1 of 16)	intron (NM_172279, intron 1 of 16)	2336.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36556149-4	chr1	36555637	36556637	+	889.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304329, intron 1 of 14)	intron (NM_001304329, intron 1 of 14)	1420.0	NM_001304330	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3692263-6	chr7	3691802	3692802	+	889.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029934, intron 1 of 7)	intron (NM_029934, intron 1 of 7)	1223.0	NM_029934	77582.0	Mm.397541	NM_029934	ENSMUSG00000035596	Mboat7	5730589L02Rik|BB1|Leng4|Lpiat|Lpiat1|mBB1	membrane bound O-acyltransferase domain containing 7	protein-coding	4.0	30.0	23.0	18.5	34.0	15.5
Merged-chr2-155534273-3	chr2	155533770	155534770	+	889.605591	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019811, intron 2 of 17)	intron (NM_019811, intron 2 of 17)	16227.0	NM_019811	60525.0	Mm.255026	NM_019811	ENSMUSG00000027605	Acss2	1110017C11Rik|ACAS|Acas1|Acas2|AceCS1|Acs1	acyl-CoA synthetase short-chain family member 2	protein-coding	3.0	27.5	10.5	33.0	99.0	45.0
Merged-chr12-84316940-5	chr12	84316457	84317457	+	889.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045546)	promoter-TSS (NR_045546)	98.0	NM_001252583	52708.0	Mm.255150	NM_144833	ENSMUSG00000042472	Zfp410	Apa1|D12Ertd748e|Znf410	zinc finger protein 410	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21237882-3	chr11	21237354	21238354	+	889.599976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1178.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	16.0	49.5	31.0	21.5	39.5	27.5
Merged-chr17-56276268-3	chr17	56275741	56276741	+	889.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174989, intron 1 of 1)	intron (NM_174989, intron 1 of 1)	526.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110250896-4	chr7	110250407	110251407	+	889.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009302, intron 2 of 11)	L1MB8|LINE|L1	29204.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103413320-3	chr11	103412844	103413844	+	889.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183034)	promoter-TSS (NM_183034)	-680.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	25.0	47.5	40.0	31.0	59.0	31.5
Merged-chr1-57606492-3	chr1	57605978	57606978	+	889.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11D|LTR|ERVK	-168383.0	NM_144882	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24851088-3	chr7	24850599	24851599	+	889.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	18592.0	NM_182785	232973.0	Mm.189648	NM_182785	ENSMUSG00000062732	Lypd4	4933400F01Rik	Ly6/Plaur domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-31082421-3	chr9	31081932	31082932	+	889.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49367.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52918343-3	chr2	52917843	52918843	+	889.544434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	60475.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67733193-4	chr15	67732722	67733722	+	889.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	506453.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	18.5	33.0	28.5	3.5	11.5	6.0
Merged-chr4-41073586-4	chr4	41073105	41074105	+	889.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24578.0	NM_016689	11828.0	Mm.34043	NM_016689	ENSMUSG00000028435	Aqp3	AQP-2	aquaporin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-109959199-4	chr7	109958695	109959695	+	889.537476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021494, intron 1 of 22)	intron (NM_021494, intron 1 of 22)	1227.0	NM_021494	19347.0	Mm.21904	NM_021494	ENSMUSG00000035901	Dennd5a	1500012B19Rik|AJ245569|AW496491|ORF37|Rab6ip1|mKIAA1091	DENN/MADD domain containing 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163744713-5	chr2	163744072	163745072	+	889.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001272052, intron 1 of 11)	intron (NM_001272052, intron 1 of 11)	5667.0	NM_007398	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45031360-1	chr2	45030860	45031860	+	889.5	f0_balb.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-8183.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20311054-2	chr10	20310554	20311554	+	889.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1415.0	NM_001025392	72567.0	Mm.294783	NM_153787	ENSMUSG00000037608	Bclaf1	2610102K23Rik|2700025J07Rik|2810454G14Rik|5730534O06Rik|AI450190|AW556225|Btf|mKIAA0164	BCL2-associated transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94372173-2	chr10	94371673	94372673	+	889.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	60224.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86188145-2	chr15	86187645	86188645	+	889.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_155352)	TTS (NR_155352)	-2004.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4080201-2	chr7	4079701	4080701	+	889.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033568, intron 6 of 8)	RMER17D2|LTR|ERVK	-16997.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	2.5	5.0	0.5	0.0	0.0	0.0
Merged-chr11-62749701-3	chr11	62749191	62750191	+	889.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20598.0	NM_133208	170740.0	Mm.339982	NM_133208	ENSMUSG00000005267	Zfp287	B230333C16Rik|SKAT-2|Skat2|Znf287|mszf16|mszf74	zinc finger protein 287	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146674561-3	chr6	146674051	146675051	+	889.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	17333.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	69.5	106.5	74.0	47.0	126.0	100.5
Merged-chr1-192137493-2	chr1	192136993	192137993	+	889.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290278, intron 1 of 10)	CpG-848	547.0	NM_001290278	214742.0	Mm.207457	NM_144814	ENSMUSG00000037395	Rcor3	4921514E24Rik|C730034D20Rik|E130101E15Rik	REST corepressor 3	protein-coding	11.5	12.5	19.0	10.5	15.0	12.0
Merged-chr4-136149743-8	chr4	136149233	136150233	+	889.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	5911.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-28883336-2	chr19	28882836	28883836	+	889.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009199, intron 2 of 11)	intron (NM_009199, intron 2 of 11)	48170.0	NM_009199	20510.0	Mm.246670	NM_009199	ENSMUSG00000024935	Slc1a1	D130048G10Rik|EAAC1|EAAC2|EAAT3|MEAAC1	solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148877595-4	chr2	148877078	148878078	+	889.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2066.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-63567430-2	chr13	63566930	63567930	+	889.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001328514, intron 1 of 23)	intron (NM_001328514, intron 1 of 23)	-1695.0	NM_008957	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116246110-3	chr4	116245554	116246554	+	889.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355586, intron 1 of 9)	B2_Mm1t|SINE|B2	23307.0	NM_001355586	18710.0	Mm.253819	NM_181585	ENSMUSG00000028698	Pik3r3	AA414954|p55|p55pik	phosphoinositide-3-kinase regulatory subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-72655366-4	chr10	72654879	72655879	+	889.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293683, intron 1 of 7)	intron (NM_001293683, intron 1 of 7)	533.0	NM_001293683	52696.0	Mm.62876	NM_025635	ENSMUSG00000019923	Zwint	2010007E07Rik|2600001N01Rik|D10Ertd749e|Zwint-1	ZW10 interactor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119538849-2	chr4	119538349	119539349	+	889.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172699)	promoter-TSS (NM_172699)	-80.0	NM_001004178	433752.0	Mm.425205	NM_001004178	ENSMUSG00000087385	Frg2f1	AA415398	FSHD region gene 2 family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83668052-2	chr8	83667552	83668552	+	889.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013641, exon 2 of 3)	exon (NM_013641, exon 2 of 3)	1408.0	NM_013641	19216.0	Mm.213000	NM_013641	ENSMUSG00000019464	Ptger1	EP1|Ptgerep1	prostaglandin E receptor 1 (subtype EP1)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86792985-2	chr6	86792487	86793487	+	889.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013471, intron 1 of 12)	intron (NM_013471, intron 1 of 12)	597.0	NM_013471	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	5.0	30.0	29.5	43.0	28.5	36.0
Merged-chr13-59824658-2	chr13	59824158	59825158	+	889.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1511.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57715443-2	chr10	57714943	57715943	+	889.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008863, intron 4 of 5)	intron (NM_008863, intron 4 of 5)	64462.0	NM_001190402	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	0.0	1.0	0.5	0.0	1.0	0.5
Merged-chr2-18032159-2	chr2	18031659	18032659	+	889.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_028376, intron 1 of 1)	CpG	4910.0	NR_028378	100034739.0	Mm.401643	NR_028378		Gm17762	-	predicted gene, 17762	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46833395-2	chr8	46832895	46833895	+	889.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008391, intron 6 of 8)	intron (NM_008391, intron 6 of 8)	93650.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131978876-2	chr1	131978376	131979376	+	889.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_145977, exon 4 of 5)	exon (NM_145977, exon 4 of 5)	8267.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79911019-2	chr12	79910519	79911519	+	889.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13714.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80244489-2	chr10	80243989	80244989	+	889.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023431, exon 14 of 14)	3' UTR (NM_023431, exon 14 of 14)	-4963.0	NM_029272	75406.0	Mm.28712	NM_029272	ENSMUSG00000020153	Ndufs7	1010001M04Rik	NADH dehydrogenase (ubiquinone) Fe-S protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115520456-2	chr5	115519942	115520942	+	889.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	13766.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	45.0	43.5	43.5	14.0	64.0	38.0
Merged-chr10-39435772-2	chr10	39435272	39436272	+	889.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	65973.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10429744-2	chr16	10429244	10430244	+	889.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013778, intron 1 of 6)	intron (NM_001013778, intron 1 of 6)	17618.0	NM_001359069	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46276063-2	chr11	46275563	46276563	+	889.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252459, intron 8 of 30)	PB1D7|SINE|Alu	36295.0	NM_001252460	76884.0	Mm.154358	NM_133769	ENSMUSG00000020340	Cyfip2	1500004I01Rik|6430511D02Rik|AA930218|AU022376|Pir121|mKIAA1168	cytoplasmic FMR1 interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122184080-3	chr2	122183611	122184611	+	889.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026251, intron 1 of 17)	RLTR35B_MM|LTR|ERVL	2078.0	NM_026251	67578.0	Mm.150462	NM_026251	ENSMUSG00000027233	Patl2	4930424G05Rik|Pat1a	protein associated with topoisomerase II homolog 2 (yeast)	protein-coding	0.5	0.0	1.5	4.0	5.5	12.0
Merged-chr8-83734547-2	chr8	83734047	83735047	+	889.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 1 of 19)	PB1D10|SINE|Alu	6764.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	3.0	17.0	10.0	15.0	17.0	10.5
Merged-chr2-155237568-2	chr2	155237064	155238064	+	889.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_111890, intron 1 of 3)	RMER21A|LTR|ERV1	956.0	NM_001291108	67068.0	Mm.23693	NM_025947	ENSMUSG00000047459	Dynlrb1	2010012N15Rik|2010320M17Rik|9430076K19Rik|AV124457|DNLC2A|Dncl2a|km23-1	dynein light chain roadblock-type 1	protein-coding	20.0	29.0	30.0	23.5	17.5	11.5
Merged-chr1-172496315-2	chr1	172495815	172496815	+	889.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001145800, exon 17 of 21)	exon (NM_001145800, exon 17 of 21)	-3931.0	NM_178598	21346.0	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	3.0	4.0	7.5	0.0	4.5	1.0
Merged-chr4-141713814-4	chr4	141713310	141714310	+	889.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017966, intron 1 of 9)	RLTR30D2_MM|LTR|ERV1	9609.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	18.0	27.0	11.0	16.0	20.5	15.5
Merged-chr11-107509765-2	chr11	107509265	107510265	+	889.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30237.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	5.0	4.5	3.5	1.5	5.0	1.5
Merged-chr11-74577224-3	chr11	74576722	74577722	+	889.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 1 of 24)	intron (NM_001015046, intron 1 of 24)	12936.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0.0	0.0	0.0	3.5	0.0	1.5
Merged-chr6-90422696-4	chr6	90422193	90423193	+	889.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173775, intron 2 of 16)	intron (NM_173775, intron 2 of 16)	5787.0	NM_173775	243538.0	Mm.386876	NM_173775	ENSMUSG00000048794	Cfap100	AW048498|C030041G11Rik|C230069K22Rik|Ccdc37	cilia and flagella associated protein 100	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33782011-5	chr17	33781470	33782470	+	889.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020581)	promoter-TSS (NM_020581)	-395.0	NM_020581	57875.0	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	7.0	16.0	11.5	9.0	9.0	13.5
Merged-chr18-62253999-4	chr18	62253478	62254478	+	889.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70226.0	NM_008313	15562.0	Mm.20440	NM_008313	ENSMUSG00000026322	Htr4	5-HT-4|5-HT4|5-HT<4L>|5HTR4	5 hydroxytryptamine (serotonin) receptor 4	protein-coding	15.5	11.5	10.5	12.5	15.0	20.0
Merged-chr13-23574892-4	chr13	23574391	23575391	+	889.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178204)	promoter-TSS (NM_178204)	510.0	NM_178188	319165.0	Mm.390553	NM_178188	ENSMUSG00000071478	Hist1h2ad	-	histone cluster 1, H2ad	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115359046-4	chr5	115358572	115359572	+	889.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10117.0	NM_007748	12861.0	Mm.43415	NM_007748	ENSMUSG00000041697	Cox6a1	VIaL	cytochrome c oxidase subunit VIa polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-22402668-3	chr10	22402181	22403181	+	889.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028580)	promoter-TSS (NR_028580)	-132.0	NR_028580	100038752.0	Mm.392859	NR_028580	ENSMUSG00000096937	Gm10825	-	predicted gene 10825	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-109463028-3	chr7	109462536	109463536	+	889.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170913, intron 10 of 19)	intron (NM_001170913, intron 10 of 19)	-23983.0	NM_054103	117229.0	Mm.389950	NM_054103	ENSMUSG00000031027	Stk33	4921505G21Rik|AW061264	serine/threonine kinase 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25578382-3	chr9	25577869	25578869	+	889.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 3 of 7)	intron (NM_026189, intron 3 of 7)	96772.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94506144-4	chr11	94505642	94506642	+	889.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170671, intron 13 of 18)	intron (NM_170671, intron 13 of 18)	-6168.0	NM_027984	71889.0	Mm.248620	NM_027984	ENSMUSG00000010080	Epn3	2310022G12Rik	epsin 3	protein-coding	0.0	2.0	1.0	0.0	1.0	0.0
Merged-chr6-121184829-5	chr6	121184184	121185184	+	889.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028730, intron 1 of 4)	intron (NM_028730, intron 1 of 4)	1017.0	NM_001304773	74043.0	Mm.491240	NM_028730	ENSMUSG00000067825	Pex26	4632428M11Rik	peroxisomal biogenesis factor 26	protein-coding	0.0	0.0	0.0	1.0	0.0	0.5
Merged-chr8-119832468-3	chr8	119831987	119832987	+	889.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	MIR|SINE|MIR	8092.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65086712-4	chr5	65086193	65087193	+	889.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-20875.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-36324884-4	chr13	36324380	36325380	+	889.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 3 of 5)	intron (NM_001039189, intron 3 of 5)	207237.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	0.0	11.0	5.5	0.0	3.5	5.0
Merged-chr4-133240713-2	chr4	133240225	133241225	+	889.400024	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016693)	promoter-TSS (NM_016693)	-93.0	NM_016693	53608.0	Mm.36640	NM_016693	ENSMUSG00000028862	Map3k6	Ask2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding	15.5	38.5	25.0	0.0	11.0	4.0
Merged-chr4-154927327-5	chr4	154926865	154927865	+	889.400024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178931, intron 1 of 7)	intron (NM_178931, intron 1 of 7)	712.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	16.0	22.5	26.0	14.5	27.0	12.5
Merged-chr1-194977288-5	chr1	194976825	194977825	+	889.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033564)	promoter-TSS (NR_033564)	-366.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-5474155-3	chr16	5473647	5474647	+	889.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-218191.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-15231788-3	chr3	15231288	15232288	+	889.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100514.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110117001-3	chr7	110116500	110117500	+	889.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5059.0	NM_001355058	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154906322-3	chr4	154905818	154906818	+	889.388855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-7275.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80371378-3	chr18	80370881	80371881	+	889.377808	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7127.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60287455-4	chr10	60286955	60287955	+	889.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146124, intron 1 of 13)	intron (NM_001146124, intron 1 of 13)	2994.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.0	0.0	0.0	2.5	5.5	1.0
Merged-chr18-23436544-4	chr18	23436045	23437045	+	889.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361217, intron 1 of 20)	intron (NM_001361217, intron 1 of 20)	21136.0	NM_001361217	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	3.0	1.5	1.5	0.0	1.5	3.0
Merged-chr5-31814241-4	chr5	31813757	31814757	+	889.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 4 of 11)	intron (NM_144541, intron 4 of 11)	116207.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0.0	1.5	4.0	0.0	6.5	10.5
Merged-chr11-83605715-4	chr11	83605210	83606210	+	889.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 2 of 8)	intron (NR_036453, intron 2 of 8)	-12623.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167920113-4	chr2	167919634	167920634	+	889.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12193.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115477434-6	chr11	115476801	115477801	+	889.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177778, intron 2 of 2)	B4A|SINE|B4	1634.0	NM_001361594	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	17.0	16.0	39.5	24.5	26.0	41.0
Merged-chr1-135259259-4	chr1	135258782	135259782	+	889.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163131)	promoter-TSS (NM_001163131)	-810.0	NM_007921	13710.0	Mm.441439	NM_007921	ENSMUSG00000003051	Elf3	ESE-1|ESX|jen	E74-like factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37217414-2	chr13	37216924	37217924	+	889.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127921.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	4.0	0.0	6.0	3.5	4.5	3.0
Merged-chr19-5493338-2	chr19	5492838	5493838	+	889.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007687, intron 3 of 3)	intron (NM_007687, intron 3 of 3)	2883.0	NM_007687	12631.0	Mm.329655	NM_007687	ENSMUSG00000056201	Cfl1	AA959946|Cof	cofilin 1, non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-68876188-2	chr8	68875684	68876684	+	889.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4371.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	10.0	8.5	6.5	0.0	4.0	4.0
Merged-chr11-53519296-2	chr11	53518796	53519796	+	889.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252332)	promoter-TSS (NM_001252332)	-440.0	NM_033144	20362.0	Mm.274399	NM_033144	ENSMUSG00000018398	Sept8	AW046166|Sepl	septin 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59865338-3	chr15	59864844	59865844	+	889.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70385.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	5.5	41.5	20.5	5.0	29.5	18.0
Merged-chr11-101170505-3	chr11	101170004	101171004	+	889.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146030, intron 1 of 12)	CpG	798.0	NM_146030	217198.0	Mm.273254	NM_146030	ENSMUSG00000035172	Plekhh3	BC020025	pleckstrin homology domain containing, family H (with MyTH4 domain) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173429782-4	chr1	173429234	173430234	+	889.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 2 of 8)	intron (NM_001013779, intron 2 of 8)	9130.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	19.0	66.5	38.0	14.0	31.5	32.5
Merged-chr15-38472341-3	chr15	38471854	38472854	+	889.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18193.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26657465-3	chr2	26656960	26657960	+	889.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13822.0	NM_010695	16821.0	Mm.123925	NM_010695	ENSMUSG00000026919	Lcn4	A630045M08Rik|Vnsp2	lipocalin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-46141149-3	chr10	46140673	46141673	+	889.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103575.0	NR_028274	100302593.0		NR_028274	ENSMUSG00000095118	Snord14d	Gm23710	small nucleolar RNA, C/D box 14D	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-40924940-3	chr14	40924441	40925441	+	889.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 2 of 8)	MER58A|DNA|hAT-Charlie	23268.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6877038-3	chr19	6876538	6877538	+	889.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19|LTR|ERVK	-18827.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-21856609-3	chr1	21856072	21857072	+	889.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023872, intron 1 of 13)	intron (NM_023872, intron 1 of 13)	105370.0	NM_001160139	226922.0	Mm.336519	NM_023872	ENSMUSG00000028033	Kcnq5	7730402H11|9230107O05Rik|AA589396|D1Mgi1	potassium voltage-gated channel, subfamily Q, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-62854875-3	chr13	62854365	62855365	+	889.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007994, intron 2 of 6)	intron (NM_007994, intron 2 of 6)	3505.0	NM_007994	14120.0	Mm.391871	NM_007994	ENSMUSG00000021456	Fbp2	Fbp-1|Fbp1|Rae-30	fructose bisphosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136888912-6	chr4	136888407	136889407	+	889.328674	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007574)	TTS (NM_007574)	-2730.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	51.5	93.5	57.5	33.0	55.0	36.0
Merged-chr6-38320788-4	chr6	38320275	38321275	+	889.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028864, intron 7 of 8)	RLTR45|LTR|ERVK	-21516.0	NM_172467	209032.0	Mm.101389	NM_172467	ENSMUSG00000047749	Zc3hav1l	B130055L09Rik|E430016P22Rik	zinc finger CCCH-type, antiviral 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-63790420-4	chr11	63789945	63790945	+	889.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131839.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	7.0	25.0	18.0	10.5	31.5	16.0
Merged-chr13-94143498-4	chr13	94143029	94144029	+	889.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	85733.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83563566-4	chr15	83563072	83564072	+	889.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009775)	promoter-TSS (NM_009775)	-1.0	NM_009775	12257.0	Mm.1508	NM_009775	ENSMUSG00000041736	Tspo	Bzrp|IBP|PBR|Tspo1	translocator protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130129578-4	chr5	130129058	130130058	+	889.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013837, exon 4 of 6)	exon (NM_013837, exon 4 of 6)	-15330.0	NM_172509	212919.0	Mm.55812	NM_172509	ENSMUSG00000034110	Kctd7	4932409E18|9430010P06Rik	potassium channel tetramerisation domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78204629-2	chr17	78204106	78205106	+	889.291626	f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 1 of 16)	intron (NM_015800, intron 1 of 16)	4358.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0.0	0.0	0.0	2.5	0.0	3.0
Merged-chr2-50652313-4	chr2	50651866	50652866	+	889.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-257318.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-62751302-4	chr1	62750818	62751818	+	889.287476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 7 of 16)	intron (NM_001077404, intron 7 of 16)	43414.0	NR_040601	74992.0	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141652318-6	chr4	141651762	141652762	+	889.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	11853.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	60.5	128.0	122.5	57.0	150.0	94.0
Merged-chr16-36706651-3	chr16	36706142	36707142	+	889.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 1 of 7)	intron (NM_001285788, intron 1 of 7)	12664.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-30508152-4	chr18	30507639	30508639	+	889.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	235274.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	0.0	2.0	0.0	0.0	2.0	0.0
Merged-chr10-75589281-4	chr10	75588756	75589756	+	889.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011820)	promoter-TSS (NM_011820)	-125.0	NM_011820	23887.0	Mm.257927	NM_011820	ENSMUSG00000006344	Ggt5	AI551243|GGL|GGT-REL|Ggtla1	gamma-glutamyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-30448630-4	chr9	30448143	30449143	+	889.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028874, intron 8 of 10)	intron (NM_028874, intron 8 of 10)	21314.0	NM_028874	102607.0	Mm.35084	NM_028874	ENSMUSG00000031993	Snx19	3526401K03Rik|AI195321|AI848208|mKIAA0254	sorting nexin 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149056042-4	chr4	149055549	149056549	+	889.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019781, intron 2 of 8)	intron (NM_019781, intron 2 of 8)	43763.0	NM_019781	56273.0	Mm.184172	NM_019781	ENSMUSG00000028975	Pex14	Pex14p|R75137	peroxisomal biogenesis factor 14	protein-coding	7.0	0.0	0.0	2.0	15.5	11.5
Merged-chr1-152288108-4	chr1	152287620	152288620	+	889.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E3|LTR|ERVL-MaLR	98562.0	NM_025677	66637.0	Mm.379120	NM_025677	ENSMUSG00000014980	Tsen15	5730449L18Rik|AL023077|Sen15	tRNA splicing endonuclease subunit 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155121400-4	chr4	155120892	155121892	+	889.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356327, intron 10 of 12)	intron (NM_001356327, intron 10 of 12)	34788.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-132029264-4	chr3	132028780	132029780	+	889.241699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56012.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	12.0	35.0	8.5	18.5	19.0	21.5
Merged-chr17-34980764-4	chr17	34980286	34981286	+	889.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1068.0	NM_001110101	27756.0	Mm.165735	NM_030597	ENSMUSG00000007050	Lsm2	D17H6S56E-2|D17H6S56E2|Dmapl|Dmpkap|G7b|Sm-X5|SmX5|snRNP	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-20767383-3	chr5	20766882	20767882	+	889.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172992, intron 14 of 17)	intron (NM_172992, intron 14 of 17)	114742.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43876436-3	chr5	43875935	43876935	+	889.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	MTE2b|LTR|ERVL-MaLR	7626.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	2.5	22.5	13.0	10.5	12.5	9.5
Merged-chr1-184048166-3	chr1	184047656	184048656	+	889.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022019, intron 2 of 3)	intron (NM_022019, intron 2 of 3)	13775.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-125777218-3	chr2	125776709	125777709	+	889.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177608, intron 1 of 17)	intron (NM_177608, intron 1 of 17)	5661.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	12.5	2.5	9.5	3.0	8.0	6.0
Merged-chr15-97705757-4	chr15	97705230	97706230	+	889.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028003)	promoter-TSS (NM_028003)	92.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-34725334-4	chr12	34724867	34725867	+	889.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	L2|LINE|L2	191728.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	4.5	34.0	15.5	10.5	54.0	7.0
Merged-chr11-34071457-4	chr11	34070944	34071944	+	889.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 7 of 20)	intron (NM_010696, intron 7 of 20)	24516.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	3.0	13.5	16.5	2.0	32.0	14.0
Merged-chr11-110380267-5	chr11	110379773	110380773	+	889.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18829.0	NM_001356345	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30915655-2	chr5	30915151	30916151	+	889.1999509999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_133918, exon 3 of 8)	exon (NM_133918, exon 3 of 8)	1865.0	NM_133918	100952.0	Mm.286375	NM_133918	ENSMUSG00000029163	Emilin1	5830419M17Rik|AW229038|BB105748|EMILIN-1|gp115	elastin microfibril interfacer 1	protein-coding	2.0	4.5	5.0	3.5	2.5	0.0
Merged-chr7-145050914-4	chr7	145050405	145051405	+	889.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110980.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	1.5	2.5	2.0	0.0	4.0	6.0
Merged-chr18-12102316-4	chr18	12101823	12102823	+	889.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178801, intron 4 of 14)	intron (NM_178801, intron 4 of 14)	19214.0	NR_110356	338363.0	Mm.271567	NM_178801	ENSMUSG00000049411	Tmem241	6030446N20Rik	transmembrane protein 241	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73108787-2	chr17	73108287	73109287	+	889.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081071, intron 1 of 5)	intron (NM_001081071, intron 1 of 5)	802.0	NM_001177967	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	1.5	0.0	1.5	1.5	0.0	1.5
Merged-chr8-115701948-3	chr8	115701450	115702450	+	889.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4944.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-87415019-4	chr12	87414548	87415548	+	889.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	22709.0	NR_037228	100526546.0		NR_037228	ENSMUSG00000105428	Mir3068	mir-3068|mmu-mir-3068	microRNA 3068	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152427871-4	chr3	152427351	152428351	+	889.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001287139, exon 4 of 14)	exon (NM_001287139, exon 4 of 14)	31167.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46934259-1	chr19	46933759	46934759	+	889.1666869999999	f0_balb.idr	intron (NM_029810, intron 2 of 17)	L1ME1|LINE|L1	28092.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	3.5	6.5	2.5	4.0	11.0	6.5
Merged-chr11-54439541-3	chr11	54439092	54440092	+	889.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173753, intron 1 of 17)	intron (NM_173753, intron 1 of 17)	1413.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84515710-3	chr12	84515235	84516235	+	889.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173756, intron 5 of 5)	intron (NM_173756, intron 5 of 5)	-54093.0	NM_007701	12677.0	Mm.4405	NM_007701	ENSMUSG00000021239	Vsx2	Chx10|Hox-10|Hox10|or	visual system homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119635347-6	chr4	119634771	119635771	+	889.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2461.0	NM_008190	14915.0	Mm.2614	NM_008190	ENSMUSG00000023247	Guca2a	Guca2	guanylate cyclase activator 2a (guanylin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-77790175-2	chr12	77789675	77790675	+	889.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	380034.0	NM_001252616	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19157550-3	chr7	19157103	19158103	+	889.166626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080815, intron 13 of 13)	CpG	7765.0	NM_026943	107686.0	Mm.29135	NM_026943	ENSMUSG00000040824	Snrpd2	1810009A06Rik|SMD2	small nuclear ribonucleoprotein D2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-17062662-2	chr7	17062162	17063162	+	889.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162950)	promoter-TSS (NM_001162950)	-235.0	NM_001162950	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	0.0	2.0	0.0	0.0	0.0	2.0
Merged-chr11-108215020-4	chr11	108214516	108215516	+	889.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	128872.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	30.0	81.5	40.5	31.0	119.5	55.5
Merged-chr11-96400068-4	chr11	96399506	96400506	+	889.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34248.0	NM_008266	15407.0	Mm.890	NM_008266	ENSMUSG00000018973	Hoxb1	Hox-2.9	homeobox B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-29696853-4	chr12	29696373	29697373	+	889.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361657, intron 3 of 24)	intron (NM_001361657, intron 3 of 24)	-10428.0	NR_046080	328075.0	Mm.447832	NR_046080	ENSMUSG00000112663	C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA	39.0	48.5	36.0	12.5	32.0	35.0
Merged-chr14-102615754-4	chr14	102615263	102616263	+	889.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	366869.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105904457-4	chr3	105904030	105905030	+	889.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009631, exon 1 of 2)	5' UTR (NM_009631, exon 1 of 2)	109.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140138223-3	chr5	140137720	140138720	+	889.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359027, intron 1 of 6)	intron (NM_001359027, intron 1 of 6)	36698.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	2.0	0.0	2.0	2.0	3.5	5.5
Merged-chr2-59688952-3	chr2	59688397	59689397	+	889.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290659, intron 1 of 25)	intron (NM_001290659, intron 1 of 25)	42128.0	NM_001290659	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139558599-3	chr5	139558073	139559073	+	889.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14675.0	NM_013702	22255.0	Mm.42190	NM_013702	ENSMUSG00000029546	Uncx	Chx4|Uncx4.1	UNC homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73889764-4	chr12	73889278	73890278	+	889.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11546.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64186885-4	chr15	64186398	64187398	+	889.095825	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	125775.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	47.0	45.5	37.0	14.0	47.5	21.0
Merged-chr11-118202680-6	chr11	118202229	118203229	+	889.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	10013.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141724867-4	chr4	141724358	141725358	+	889.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1439.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	18.0	44.5	28.5	18.0	44.5	17.5
Merged-chr16-76977164-4	chr16	76976632	76977632	+	889.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33749.0	NR_040573	76601.0	Mm.396217	NR_040573	ENSMUSG00000100857	1700041M19Rik	-	RIKEN cDNA 1700041M19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103274827-6	chr15	103274363	103275363	+	889.055542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019817, intron 1 of 8)	intron (NM_019817, intron 1 of 8)	1975.0	NM_001357748	56447.0	Mm.29473	NM_019817	ENSMUSG00000060992	Copz1	5930435A22Rik|AA407760|D4Ertd360e	coatomer protein complex, subunit zeta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136431488-3	chr4	136430985	136431985	+	889.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285484, intron 1 of 1)	intron (NM_001285484, intron 1 of 1)	6873.0	NM_001285484	15552.0	Mm.40573	NM_008309	ENSMUSG00000070687	Htr1d	5-HT-1D|5-HT1D|AI853647|Gpcr14|Htr1db	5-hydroxytryptamine (serotonin) receptor 1D	protein-coding	0.0	0.0	3.0	0.0	0.0	1.5
Merged-chr19-53906316-4	chr19	53905842	53906842	+	889.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168491, intron 1 of 11)	intron (NM_001168491, intron 1 of 11)	2991.0	NM_001168491	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	3.5	9.5	4.5	7.0	10.5	2.0
Merged-chr2-181918667-4	chr2	181918166	181919166	+	889.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54306.0	NM_025901	67005.0	Mm.271986	NM_025901	ENSMUSG00000038628	Polr3k	12.3kDa|1500004O14Rik|AI196849|AU014893|C11|RPC10|RPC11	polymerase (RNA) III (DNA directed) polypeptide K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-48943927-4	chr7	48943415	48944415	+	889.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-15158.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35257206-3	chr2	35256738	35257738	+	889.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206368, intron 1 of 16)	intron (NM_001206368, intron 1 of 16)	879.0	NM_001206368	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21811781-3	chr13	21811281	21812281	+	889.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175657)	promoter-TSS (NM_175657)	-3.0	NM_175657	319161.0	Mm.261664	NM_175657	ENSMUSG00000069305	Hist1h4n	-	histone cluster 1, H4n	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-10856444-1	chr13	10855944	10856944	+	889.0	f1_balb.idr	Intergenic	Intergenic	-495641.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-93066434-1	chr6	93065934	93066934	+	889.0	f0_balb.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	125852.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr7-82649278-3	chr7	82648754	82649754	+	889.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177894)	promoter-TSS (NM_177894)	640.0	NM_175317	101592.0	Mm.238020	NM_175317	ENSMUSG00000038563	Efl1	4932434J20Rik|6030468D11Rik|AI451340|AU019507|AU022896|D7Ertd791e|Eftud1	elongation factor like GPTase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43883797-3	chr7	43883307	43884307	+	889.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019928, intron 3 of 5)	intron (NM_019928, intron 3 of 5)	2635.0	NM_019928	56640.0	Mm.42080	NM_019928	ENSMUSG00000006948	Klk4	ESMP1|KLK-L1|PSTS|Prss17	kallikrein related-peptidase 4 (prostase, enamel matrix, prostate)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151705274-2	chr1	151704774	151705774	+	889.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 10 of 13)	ORR1E|LTR|ERVL-MaLR	49453.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71511863-4	chr8	71511380	71512380	+	889.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_032398)	promoter-TSS (NM_032398)	-111.0	NM_032398	84094.0	Mm.260768	NM_032398	ENSMUSG00000034845	Plvap	MECA32|Pv1	plasmalemma vesicle associated protein	protein-coding	4.5	0.5	2.5	1.5	0.0	6.5
Merged-chr3-157634584-3	chr3	157634078	157635078	+	889.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011196, intron 2 of 2)	intron (NM_011196, intron 2 of 2)	67686.0	NM_011196	19218.0	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-49705603-4	chr18	49705142	49706142	+	889.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170960, intron 2 of 3)	Lx9|LINE|L1	49959.0	NM_001170960	68857.0	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139797014-2	chr5	139796514	139797514	+	889.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010757, intron 1 of 2)	intron (NM_010757, intron 1 of 2)	5478.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41910890-3	chr10	41910388	41911388	+	889.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	23449.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-59020536-3	chr6	59020035	59021035	+	889.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153574, intron 1 of 17)	AmnSINE1|SINE|Deu	3967.0	NM_153574	58909.0	Mm.28813	NM_153574	ENSMUSG00000037709	Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89282185-3	chr3	89281662	89282662	+	889.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1211.0	NM_001162425	13636.0	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101833779-2	chr5	101833279	101834279	+	889.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172882, exon 67 of 67)	3' UTR (NM_172882, exon 67 of 67)	68649.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-4596101-4	chr4	4595591	4596591	+	889.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66633.0	NM_001277919	622019.0	Mm.246123	NM_001277919		Gm11780	-	predicted gene 11780	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120819487-2	chr4	120818987	120819987	+	889.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048168, intron 1 of 9)	L3|LINE|CR1	-3774.0	NM_001357192	18046.0	Mm.318389	NM_008692	ENSMUSG00000032897	Nfyc	-	nuclear transcription factor-Y gamma	protein-coding	0.0	0.0	2.0	0.0	7.0	0.0
Merged-chr7-16147804-2	chr7	16147307	16148307	+	889.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347561, intron 4 of 8)	intron (NM_001347561, intron 4 of 8)	17981.0	NM_148946	110891.0	Mm.241147	NM_148946	ENSMUSG00000030376	Slc8a2	Ncx2	solute carrier family 8 (sodium/calcium exchanger), member 2	protein-coding	0.0	0.0	0.0	0.0	1.5	1.5
Merged-chr7-68799192-3	chr7	68798718	68799718	+	889.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49980.0	NM_025549	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-4161656-2	chr9	4161156	4162156	+	889.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	147838.0	NM_026276	67618.0	Mm.33970	NM_026276	ENSMUSG00000025894	Aasdhppt	2010309J24Rik|2810407B07Rik|AASD-PPT|CGI-80|LYS2|LYS5	aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154945900-2	chr4	154945400	154946400	+	889.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15023.0	NM_010419	15208.0	Mm.137268	NM_010419	ENSMUSG00000048001	Hes5	bHLHb38	hes family bHLH transcription factor 5	protein-coding	0.0	1.5	0.0	1.5	0.0	0.0
Merged-chr6-5163719-3	chr6	5163227	5164227	+	889.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_181595, exon 16 of 16)	3' UTR (NM_181595, exon 16 of 16)	30219.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0.0	0.5	0.5	0.0	0.0	0.0
Merged-chr17-34107529-1	chr17	34107029	34108029	+	889.0	f1_c57bl6.idr	Intergenic	Intergenic	-12220.0	NR_046183	414076.0	Mm.473092	NR_046183	ENSMUSG00000098197	BC051537	-	cDNA sequence BC051537	ncRNA	6.0	1.5	0.0	0.0	9.0	0.5
Merged-chr5-5755216-3	chr5	5754734	5755734	+	889.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5917.0	NM_027399	70358.0	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90655555-4	chr5	90655064	90656064	+	889.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15037.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	12.0	24.0	37.5	7.5	32.5	28.5
Merged-chr5-3504901-2	chr5	3504401	3505401	+	889.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-38932.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-73281815-2	chr11	73281315	73282315	+	889.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145099, intron 7 of 17)	intron (NM_145099, intron 7 of 17)	14195.0	NM_145099	246788.0	Mm.75196	NM_145099	ENSMUSG00000043029	Trpv3	1110036I10Rik|AI644701|Nh|VRL3	transient receptor potential cation channel, subfamily V, member 3	protein-coding	4.0	6.5	3.0	5.0	7.0	3.0
Merged-chr17-35923385-2	chr17	35922883	35923883	+	889.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163818, exon 2 of 19)	exon (NM_001163818, exon 2 of 19)	4111.0	NM_001357740	52040.0	Mm.29385	NM_175934	ENSMUSG00000039220	Ppp1r10	2610025H06Rik|Cat53|D17Ertd808e|Fb19|Pnuts	protein phosphatase 1, regulatory subunit 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57822261-2	chr6	57821761	57822761	+	889.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 1 of 4)	intron (NM_146168, intron 1 of 4)	2864.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31700680-2	chr5	31700180	31701180	+	889.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181280, intron 1 of 12)	B4A|SINE|B4	2630.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80934938-2	chr18	80934438	80935438	+	889.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001201569)	promoter-TSS (NM_001201569)	-880.0	NM_015805	50771.0	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding	0.0	3.0	3.0	0.0	4.0	3.0
Merged-chr12-79525719-4	chr12	79525219	79526219	+	889.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	228368.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97992918-2	chr3	97992418	97993418	+	889.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20620.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62554998-3	chr11	62554483	62555483	+	889.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3252.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34114996-2	chr17	34114496	34115496	+	889.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037970, exon 7 of 13)	non-coding (NR_037970, exon 7 of 13)	4904.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	2.0	10.0	6.5	2.0	10.0	6.5
Merged-chr5-30958343-1	chr5	30957843	30958843	+	889.0	f1_c57bl6.idr	exon (NM_016703, exon 5 of 9)	exon (NM_016703, exon 5 of 9)	1984.0	NM_001294302	50907.0	Mm.272414	NM_016703	ENSMUSG00000045302	Preb	C85705	prolactin regulatory element binding	protein-coding	0.0	4.0	0.0	1.5	0.0	1.0
Merged-chr17-7433299-2	chr17	7432799	7433799	+	889.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47994.0	NM_001142539	667055.0	Mm.327371	NM_001142539	ENSMUSG00000056133	Gm9992	-	predicted gene 9992	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-136086625-4	chr3	136086138	136087138	+	889.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 10 of 16)	intron (NM_001033350, intron 10 of 16)	239428.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-28867971-2	chr11	28867471	28868471	+	889.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_146015, exon 4 of 11)	exon (NM_146015, exon 4 of 11)	14766.0	NM_146015	216616.0	Mm.44176	NM_146015	ENSMUSG00000020467	Efemp1	-	epidermal growth factor-containing fibulin-like extracellular matrix protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85090504-1	chr1	85090004	85091004	+	889.0	f1_balb.idr	intron (NM_213615, intron 5 of 6)	Lx2B2|LINE|L1	19349.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9656465-2	chr4	9655979	9656979	+	889.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	URR1A|DNA|hAT-Charlie	12683.0	NM_023066	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	29.5	14.5	7.5	9.0	2.5	16.5
Merged-chr13-105198219-2	chr13	105197723	105198723	+	889.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360891, intron 5 of 7)	Lx2|LINE|L1	94791.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	2.0	13.0	4.0	0.0	9.5	4.5
Merged-chr15-102225567-4	chr15	102225041	102226041	+	889.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013566, intron 2 of 14)	intron (NM_013566, intron 2 of 14)	6394.0	NM_013566	16421.0	Mm.58	NM_013566	ENSMUSG00000001281	Itgb7	Ly69	integrin beta 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-97936559-4	chr4	97936069	97937069	+	889.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	158943.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3123286-1	chr11	3122786	3123786	+	889.0	f0_c57.idr	promoter-TSS (NR_003517)	promoter-TSS (NR_003517)	-735.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34909513-2	chr2	34909013	34910013	+	889.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028716, intron 3 of 14)	B3|SINE|B2	4463.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11788500-2	chr8	11788000	11789000	+	889.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_017402, intron 4 of 19)	MTC|LTR|ERVL-MaLR	30170.0	NM_001113518	54126.0	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62554135-3	chr11	62553664	62554664	+	889.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_002875)	TTS (NR_002875)	2433.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22547025-2	chr16	22546525	22547525	+	889.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346673, intron 19 of 23)	intron (NM_001346673, intron 19 of 23)	-14841.0	NR_106170	102465887.0		NR_106170	ENSMUSG00000099071	Mir8095	Gm27566|mmu-mir-8095	microRNA 8095	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-114366625-1	chr12	114366125	114367125	+	889.0	f1_c57bl6.idr	Intergenic	Intergenic	102841.0	NR_106062	102465663.0		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	4.0	4.0	3.5	13.5	2.0	9.5
Merged-chr13-12635196-4	chr13	12634710	12635710	+	888.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003568, intron 1 of 6)	L1MB8|LINE|L1	15185.0	NR_003568	664862.0	Mm.415635	NR_003568		Gpr137b-ps	2310041G17Rik	G protein-coupled receptor 137B, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125053175-7	chr5	125052977	125053977	+	888.9761960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011424, intron 18 of 46)	intron (NM_011424, intron 18 of 46)	50002.0	NM_028443	73121.0	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	0.0	4.0	3.5	2.0	1.0	4.0
Merged-chr7-144447245-4	chr7	144446710	144447710	+	888.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357116, intron 10 of 15)	intron (NM_001357116, intron 10 of 15)	23725.0	NM_007803	13043.0	Mm.205601	NM_007803	ENSMUSG00000031078	Cttn	1110020L01Rik|Ems1	cortactin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-138919220-4	chr7	138918717	138919717	+	888.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9711.0	NM_009760	12176.0	Mm.378890	NM_009760	ENSMUSG00000078566	Bnip3	Nip3	BCL2/adenovirus E1B interacting protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-42138582-3	chr9	42138117	42139117	+	888.955566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14320.0	NM_011436	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	8.5	12.0	8.5	4.5	9.0	5.5
Merged-chr11-100938836-3	chr11	100938331	100939331	+	888.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_213660, intron 1 of 23)	intron (NM_213660, intron 1 of 23)	709.0	NM_213660	20848.0	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-109446315-4	chr13	109445811	109446811	+	888.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	121567.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	4.5	9.0	10.5	3.5	9.0	6.0
Merged-chr2-91237713-6	chr2	91237257	91238257	+	888.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028119)	promoter-TSS (NM_028119)	611.0	NR_015464	606735.0	Mm.246808	NR_015464	ENSMUSG00000097868	A330069E16Rik	-	RIKEN cDNA A330069E16 gene	ncRNA	20.5	28.0	15.5	19.0	40.0	30.5
Merged-chr11-67550006-4	chr11	67549517	67550517	+	888.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008088, intron 1 of 13)	MIRb|SINE|MIR	17019.0	NM_008088	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.0	1.5	0.5	0.0	0.0	0.0
Merged-chr8-126491516-2	chr8	126491016	126492016	+	888.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-16451.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108911915-6	chr8	108911631	108912631	+	888.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 4 of 9)	intron (NM_007496, intron 4 of 9)	-24729.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	6.5	16.5	7.5	3.5	20.5	14.0
Merged-chr17-56350872-4	chr17	56350378	56351378	+	888.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172132, intron 1 of 22)	intron (NM_172132, intron 1 of 22)	24828.0	NM_001357909	193796.0	Mm.45047	NM_172132	ENSMUSG00000024201	Kdm4b	4732474L06Rik|Jmjd2b	lysine (K)-specific demethylase 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129182884-4	chr2	129182398	129183398	+	888.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2225.0	NR_045264	100048701.0	Mm.428544	NR_045264	ENSMUSG00000084826	AI847159	-	expressed sequence AI847159	ncRNA	7.5	24.5	8.5	3.0	20.0	17.5
Merged-chr19-40722415-3	chr19	40721859	40722859	+	888.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 3 of 9)	intron (NM_001304721, intron 3 of 9)	62589.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36803058-4	chr18	36802625	36803625	+	888.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1362.0	NR_027885	378472.0	Mm.482379	NR_027885		Vaultrc5	Gm22653|Mvg1	vault RNA component 5	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-157248252-4	chr1	157247759	157248759	+	888.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177644, intron 3 of 17)	intron (NM_177644, intron 3 of 17)	-139579.0	NM_001305063	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	0.0	10.5	5.5	2.0	16.0	4.5
Merged-chr10-99261119-4	chr10	99260642	99261642	+	888.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2089.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-13740966-4	chr17	13740456	13741456	+	888.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022311, intron 1 of 2)	intron (NM_022311, intron 1 of 2)	-19585.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43248020-4	chr5	43247518	43248518	+	888.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177379, intron 3 of 10)	L3|LINE|CR1	-12664.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-23146177-2	chr19	23145677	23146677	+	888.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_010638, intron 1 of 1)	intron (NM_010638, intron 1 of 1)	-3254.0	NR_035423	100316672.0		NR_035423	ENSMUSG00000080626	Mir1192	Mirn1192|mmu-mir-1192	microRNA 1192	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-116282108-4	chr12	116281611	116282611	+	888.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028731, intron 1 of 21)	intron (NM_028731, intron 1 of 21)	889.0	NM_028731	52635.0	Mm.273755	NM_028731	ENSMUSG00000021171	Esyt2	2410017M09Rik|4921504I16Rik|CHR2SYT|D12Ertd551e|Fam62b	extended synaptotagmin-like protein 2	protein-coding	7.5	28.5	15.5	5.0	17.0	12.0
Merged-chr10-75836228-4	chr10	75835716	75836716	+	888.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-1335.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45464289-2	chr7	45463789	45464789	+	888.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_007527, intron 4 of 5)	intron (NM_007527, intron 4 of 5)	2609.0	NM_007527	12028.0	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110788874-2	chr5	110788347	110789347	+	888.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_009469, exon 22 of 28)	exon (NM_009469, exon 22 of 28)	-8232.0	NM_001025562	56361.0	Mm.23528	NM_019700	ENSMUSG00000029507	Pus1	A730013B20Rik|MPUS1|mPus1p	pseudouridine synthase 1	protein-coding	0.0	0.0	0.5	0.0	1.0	1.0
Merged-chr6-82770670-2	chr6	82770170	82771170	+	888.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 1 of 17)	ID_B1|SINE|B4	3784.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5491223-4	chr11	5490714	5491714	+	888.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29427.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	0.0	3.0	0.5	1.5	3.5	2.0
Merged-chr5-107868518-4	chr5	107867997	107868997	+	888.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007964, intron 1 of 17)	CpG	6610.0	NM_007964	14020.0	Mm.35796	NM_007964	ENSMUSG00000011831	Evi5	NB4S	ecotropic viral integration site 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25764948-3	chr15	25764479	25765479	+	888.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001353142, intron 1 of 20)	intron (NM_001353142, intron 1 of 20)	-9034.0	NM_001353141	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75652591-2	chr11	75652097	75653097	+	888.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080774, intron 1 of 31)	intron (NM_001080774, intron 1 of 31)	447.0	NM_001080774	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	3.5	21.5	10.0	3.0	3.5	3.5
Merged-chr9-66917614-4	chr9	66917113	66918113	+	888.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	2092.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	17.5	25.5	14.5	14.5	40.0	21.5
Merged-chr9-59752070-3	chr9	59751569	59752569	+	888.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173018, intron 1 of 43)	intron (NM_173018, intron 1 of 43)	895.0	NM_173018	270163.0	Mm.249545	NM_173018	ENSMUSG00000039585	Myo9a	4732465J09Rik|C130068I12Rik|C230003M11	myosin IXa	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156841962-3	chr2	156841476	156842476	+	888.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291124, intron 1 of 3)	intron (NM_001291124, intron 1 of 3)	1969.0	NM_173396	228839.0	Mm.315625	NM_173396	ENSMUSG00000062175	Tgif2	4921501K24|5730599O09Rik|C80753|C81206	TGFB-induced factor homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21395368-3	chr5	21394865	21395865	+	888.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	22692.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-151969543-3	chr2	151969002	151970002	+	888.7666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001289151, exon 2 of 2)	3' UTR (NM_001289151, exon 2 of 2)	-1885.0	NR_035478	100316704.0		NR_035478	ENSMUSG00000088491	Mir1953	mir-1953|mmu-mir-1953	microRNA 1953	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23610669-4	chr17	23610180	23611180	+	888.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001289484, exon 7 of 7)	exon (NM_001289484, exon 7 of 7)	9854.0	NM_001289482	332221.0	Mm.270315	NM_001033425	ENSMUSG00000023902	Zscan10	BC068284|Zfp206|Zkscan10|Znf206	zinc finger and SCAN domain containing 10	protein-coding	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr3-86947634-4	chr3	86947121	86948121	+	888.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-26737.0	NM_001195498	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	6.5	9.5	25.5	56.5	141.5	98.0
Merged-chr2-18698819-4	chr2	18698321	18699321	+	888.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001334)	promoter-TSS (NM_001001334)	-201.0	NM_001001334	381350.0	Mm.330024	NM_001001334	ENSMUSG00000037708	Spag6	Spag6l	sperm associated antigen 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122572033-4	chr2	122571534	122572534	+	888.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39243.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	57.0	89.0	93.5	72.5	180.5	122.0
Merged-chr2-73484808-4	chr2	73484319	73485319	+	888.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	934.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58068796-3	chr13	58068288	58069288	+	888.716675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195075, intron 6 of 16)	intron (NM_001195075, intron 6 of 16)	33640.0	NM_001195075	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	8.5	2.0	4.0	1.0	0.5	2.5
Merged-chr11-106673661-4	chr11	106673172	106674172	+	888.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 12 of 14)	intron (NM_001305158, intron 12 of 14)	41609.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87730829-4	chr6	87730363	87731363	+	888.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159697)	promoter-TSS (NM_001159697)	-6.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	1.5	6.5	12.0	24.5	17.0	25.0
Merged-chr16-65197465-4	chr16	65196972	65197972	+	888.6904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-91688.0	NM_008310	15557.0	Mm.5040	NM_008310	ENSMUSG00000050783	Htr1f	Htr1eb	5-hydroxytryptamine (serotonin) receptor 1F	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr11-84290761-6	chr11	84290307	84291307	+	888.673584	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133360, intron 28 of 53)	intron (NM_133360, intron 28 of 53)	95369.0	NM_133360	107476.0	Mm.31374	NM_133360	ENSMUSG00000020532	Acaca	A530025K05Rik|Acac|Acc1|Gm738	acetyl-Coenzyme A carboxylase alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58265388-2	chr15	58264888	58265888	+	888.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-50496.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78583518-3	chr15	78583003	78584003	+	888.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1914.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	4.0	15.5	20.5	3.0	12.5	15.5
Merged-chr6-31399771-3	chr6	31399258	31400258	+	888.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040300)	promoter-TSS (NR_040300)	930.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41267003-2	chr19	41266503	41267503	+	888.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2999.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-7129972-3	chr15	7129488	7130488	+	888.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358593, intron 1 of 19)	CpG	416.0	NM_001358593	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13239779-3	chr16	13239275	13240275	+	888.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-16706.0	NM_001122667	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-85449689-4	chr9	85449186	85450186	+	888.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122536.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0.0	0.0	2.5	0.0	2.0	5.0
Merged-chr2-73371350-3	chr2	73370791	73371791	+	888.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276444, intron 4 of 15)	intron (NM_001276444, intron 4 of 15)	15189.0	NM_001276443	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-32333614-3	chr3	32333115	32334115	+	888.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31874.0	NR_027966	67576.0	Mm.435324	NR_027966		4930429B21Rik	-	RIKEN cDNA 4930429B21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-105521348-3	chr9	105520849	105521849	+	888.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253831)	promoter-TSS (NM_001253831)	-92.0	NM_001253831	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	9.5	1.0	21.5	2.0	2.5	5.0
Merged-chr5-69522288-3	chr5	69521789	69522789	+	888.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023784, intron 3 of 5)	intron (NM_023784, intron 3 of 5)	20358.0	NM_023784	75581.0	Mm.154776	NM_023784	ENSMUSG00000029158	Yipf7	2310016N21Rik|Yip1b	Yip1 domain family, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3685301-2	chr19	3684801	3685801	+	888.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008513, intron 1 of 22)	intron (NM_008513, intron 1 of 22)	1263.0	NM_008513	16973.0	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96860752-4	chr11	96860254	96861254	+	888.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019877, intron 8 of 8)	intron (NM_019877, intron 8 of 8)	10361.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	0.0	1.5	2.0	0.0	11.0	6.0
Merged-chr1-120534013-2	chr1	120533513	120534513	+	888.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28989.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	4.0	3.0	3.0	0.0	1.5	1.0
Merged-chr3-37038031-6	chr3	37037555	37038555	+	888.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172679, intron 74 of 85)	intron (NM_172679, intron 74 of 85)	-25601.0	NM_009350	21744.0	Mm.8122	NM_009350	ENSMUSG00000027719	Adad1	Tenr	adenosine deaminase domain containing 1 (testis specific)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91483457-4	chr1	91482900	91483900	+	888.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11268.0	NM_028718	74019.0	Mm.318430	NM_028718	ENSMUSG00000034292	Traf3ip1	3930402D05Rik|AU041749|MIP-T3	TRAF3 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151917914-4	chr1	151917440	151918440	+	888.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 4 of 5)	intron (NM_197990, intron 4 of 5)	162566.0	NM_001311166	66967.0	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111966759-3	chr13	111966271	111967271	+	888.644409	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98835.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	5.5	10.5	9.0	9.0	19.5	16.5
Merged-chr6-57859782-4	chr6	57859248	57860248	+	888.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15291.0	NM_134183	171201.0	Mm.377179	NM_134183	ENSMUSG00000115343	Vmn1r21	V1rc28	vomeronasal 1 receptor 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35270767-2	chr2	35270267	35271267	+	888.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001206367, intron 2 of 17)	intron (NM_001206367, intron 2 of 17)	4023.0	NM_001206369	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-21992337-4	chr3	21991859	21992859	+	888.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84293.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51253754-4	chr14	51253239	51254239	+	888.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25B|LTR|ERVK	2373.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	6.5	2.5	7.0	6.0	13.5	28.5
Merged-chr12-55437289-4	chr12	55436799	55437799	+	888.6166380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38474.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44164341-5	chr13	44163819	44164819	+	888.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43152.0	NR_045285	328235.0	Mm.188356	NR_045285	ENSMUSG00000089815	Gm5083	A730030A06	predicted gene 5083	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3320940-2	chr19	3320440	3321440	+	888.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2361.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	3.0	4.0	7.5	1.5	6.0	3.0
Merged-chr12-110816988-4	chr12	110816482	110817482	+	888.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011973, intron 4 of 11)	intron (NM_011973, intron 4 of 11)	23957.0	NM_011973	26448.0	Mm.140948	NM_011973	ENSMUSG00000056458	Mok	RAGE1|Rage|Stk30	MOK protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92461413-2	chr5	92460901	92461901	+	888.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 3 of 11)	B1F|SINE|Alu	2844.0	NR_105843	102466159.0		NR_105843	ENSMUSG00000099160	Mir6415	Gm27714|mmu-mir-6415	microRNA 6415	ncRNA	2.5	3.5	0.5	0.0	0.0	0.5
Merged-chr17-35873880-4	chr17	35873263	35874263	+	888.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175242, exon 2 of 3)	exon (NM_175242, exon 2 of 3)	-6015.0	NM_026987	69192.0	Mm.390986	NM_026987	ENSMUSG00000024422	Dhx16	2410006N22Rik|DBP2|Ddx16|mKIAA0577	DEAH (Asp-Glu-Ala-His) box polypeptide 16	protein-coding	0.5	6.0	4.5	13.0	4.0	6.0
Merged-chr6-54939938-4	chr6	54939428	54940428	+	888.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171007, intron 4 of 11)	intron (NM_001171007, intron 4 of 11)	31733.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-75871323-4	chr5	75870832	75871832	+	888.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	107096.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	3.0	10.0	0.5	0.0	0.0	0.0
Merged-chr19-5232821-4	chr19	5232315	5233315	+	888.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153129, intron 1 of 23)	intron (NM_153129, intron 1 of 23)	40304.0	NM_153129	107975.0	Mm.234923	NM_153129	ENSMUSG00000024855	Pacs1	AI325977	phosphofurin acidic cluster sorting protein 1	protein-coding	0.0	0.0	1.0	0.0	0.0	2.0
Merged-chr4-99033201-4	chr4	99032697	99033697	+	888.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013913, intron 2 of 6)	intron (NM_013913, intron 2 of 6)	2243.0	NM_013913	30924.0	Mm.28341	NM_013913	ENSMUSG00000028553	Angptl3	hypl	angiopoietin-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69628490-4	chr11	69627989	69628989	+	888.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21B|LTR|ERVL	-4482.0	NM_011814	23879.0	Mm.41930	NM_011814	ENSMUSG00000018765	Fxr2	Fxr2h	fragile X mental retardation, autosomal homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5151510-4	chr19	5151094	5152094	+	888.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153129, intron 10 of 23)	intron (NM_153129, intron 10 of 23)	-33186.0	NM_008451	16594.0	Mm.271648	NM_008451	ENSMUSG00000024862	Klc2	8030455F02Rik|AW212649|KLC 2|KLC-2	kinesin light chain 2	protein-coding	3.0	0.5	3.0	1.0	0.0	1.0
Merged-chr1-67360991-3	chr1	67360483	67361483	+	888.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	237956.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52726301-3	chr13	52725791	52726791	+	888.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4c|LINE|L1	30914.0	NR_027893	105404.0	Mm.184173	NR_027893		BB123696	-	expressed sequence BB123696	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60989294-3	chr18	60988803	60989803	+	888.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24896.0	NM_201353	240332.0	Mm.39846	NM_201353	ENSMUSG00000052026	Slc6a7	AW455934|PROT	solute carrier family 6 (neurotransmitter transporter, L-proline), member 7	protein-coding	1.0	0.0	1.5	0.0	0.0	3.0
Merged-chr13-111461567-3	chr13	111461031	111462031	+	888.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361926, intron 2 of 10)	intron (NM_001361926, intron 2 of 10)	28596.0	NM_028487	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136470730-3	chr4	136470233	136471233	+	888.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024452, intron 1 of 4)	CpG	972.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	7.0	19.5	14.5	10.5	28.0	19.0
Merged-chr15-28182103-4	chr15	28181586	28182586	+	888.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21680.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-12473740-4	chr16	12473247	12474247	+	888.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-337643.0	NR_040507	75493.0	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-18051703-4	chr3	18051177	18052177	+	888.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2648.0	NM_021560	59058.0	Mm.149938	NM_021560	ENSMUSG00000025128	Bhlhe22	Beta3|Beta3a|Bhlhb5	basic helix-loop-helix family, member e22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84285768-3	chr8	84285216	84286216	+	888.5277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15314.0	NM_026350	67736.0	Mm.30095	NM_026350	ENSMUSG00000004994	Ccdc130	4930527D15Rik|C77430	coiled-coil domain containing 130	protein-coding	15.5	12.0	7.0	5.0	9.5	15.5
Merged-chr11-54067341-2	chr11	54066841	54067841	+	888.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019417, intron 1 of 6)	intron (NM_019417, intron 1 of 6)	1676.0	NM_019417	30794.0	Mm.21830	NM_019417	ENSMUSG00000020388	Pdlim4	Ril	PDZ and LIM domain 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3975208-4	chr4	3974708	3975708	+	888.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35784.0	NR_104356	66433.0	Mm.27406	NM_181391	ENSMUSG00000042198	Chchd7	1810049H20Rik	coiled-coil-helix-coiled-coil-helix domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29843055-2	chr17	29842555	29843555	+	888.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081160, exon 8 of 16)	exon (NM_001081160, exon 8 of 16)	44827.0	NM_001081160	74762.0	Mm.40901	NM_001081160	ENSMUSG00000043557	Mdga1	1200011I03Rik|GPIM|Mamdc3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153411477-2	chr1	153410977	153411977	+	888.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033736, intron 1 of 3)	B1_Mus2|SINE|Alu	2756.0	NR_033736	626058.0	Mm.31556	NM_001177359		E330020D12Rik	EG626058|F430003O07Rik|Gm6648	Riken cDNA E330020D12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-46844163-2	chr7	46843663	46844663	+	888.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1641.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27830674-2	chr17	27830174	27831174	+	888.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B1|LTR|ERVL	-9413.0	NM_011432	20630.0	Mm.103949	NM_011432	ENSMUSG00000024217	Snrpc	Snrp1c|U1-C|U1C	U1 small nuclear ribonucleoprotein C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21288627-2	chr9	21288127	21289127	+	888.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145416)	promoter-TSS (NM_145416)	-658.0	NM_145416	215194.0	Mm.290690	NM_145416	ENSMUSG00000035047	Kri1	-	KRI1 homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25279342-3	chr2	25278843	25279843	+	888.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175300, intron 8 of 12)	intron (NM_175300, intron 8 of 12)	6877.0	NM_175300	99152.0	Mm.291624	NM_175300	ENSMUSG00000026965	Anapc2	9230107K09Rik|AL024279|Apc2|Emi4|Imi4|mKIAA1406	anaphase promoting complex subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62816379-2	chr9	62815879	62816879	+	888.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4731.0	NM_010193	14155.0	Mm.24069	NM_010193	ENSMUSG00000032244	Fem1b	mKIAA0396	feminization 1 homolog b (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118448111-2	chr11	118447611	118448611	+	888.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001204129, exon 4 of 4)	exon (NM_001204129, exon 4 of 4)	4577.0	NM_001204130	56745.0	Mm.23845	NM_019959	ENSMUSG00000017446	C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58974532-2	chr15	58974032	58975032	+	888.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	40722.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31526966-6	chr5	31526422	31527422	+	888.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009206)	promoter-TSS (NM_009206)	-73.0	NM_001359154	20534.0	Mm.352407	NM_009206	ENSMUSG00000029141	Slc4a1ap	kanadaptin	solute carrier family 4 (anion exchanger), member 1, adaptor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106192057-2	chr11	106191557	106192557	+	888.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252449, intron 1 of 10)	B1_Mur3|SINE|Alu	1546.0	NM_001252448	72149.0	Mm.403722	NM_028126	ENSMUSG00000069631	Strada	2610019A05Rik|6030402H20Rik|AI480680|E130112C09Rik	STE20-related kinase adaptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102462590-2	chr15	102462090	102463090	+	888.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001170911, exon 4 of 4)	3' UTR (NM_001170911, exon 4 of 4)	3420.0	NM_025385	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	3.5	1.0	0.0	3.5	1.0	0.0
Merged-chr4-128787560-4	chr4	128787055	128788055	+	888.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081098, intron 4 of 8)	L1ME4c|LINE|L1	18557.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118488788-2	chr11	118488288	118489288	+	888.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001285436)	TTS (NM_001285436)	11956.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-131290630-4	chr6	131290133	131291133	+	888.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025564, intron 1 of 4)	B2_Mm2|SINE|B2	2611.0	NM_001327860	66441.0	Mm.46623	NM_025564	ENSMUSG00000030188	Magohb	2010012C16Rik|Mago|Magoh|Magoh-rs1	mago homolog B, exon junction complex core component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70214519-2	chr11	70214019	70215019	+	888.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_153081, exon 2 of 5)	exon (NM_153081, exon 2 of 5)	609.0	NM_153081	216867.0	Mm.289238	NM_153081	ENSMUSG00000040938	Slc16a11	AB041591|MCT 11|MNCb-2717	solute carrier family 16 (monocarboxylic acid transporters), member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95848629-2	chr15	95848129	95849129	+	888.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253813, intron 2 of 20)	intron (NM_001253813, intron 2 of 20)	-18557.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81335865-2	chr7	81335365	81336365	+	888.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9369.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4461038-4	chr2	4460551	4461551	+	888.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	RSINE1|SINE|B4	60075.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158778015-2	chr2	158777515	158778515	+	888.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027975, intron 1 of 3)	MIRc|SINE|MIR	9916.0	NM_027975	71878.0	Mm.85162	NM_027975	ENSMUSG00000027654	Fam83d	2310007D09Rik|BB104611	family with sequence similarity 83, member D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55529395-2	chr13	55528895	55529895	+	888.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013739)	promoter-TSS (NM_013739)	-857.0	NM_013739	27261.0	Mm.33910	NM_013739	ENSMUSG00000035711	Dok3	AI450713|Dokl	docking protein 3	protein-coding	1.0	0.0	0.0	0.0	0.0	5.5
Merged-chr3-5219507-2	chr3	5219007	5220007	+	888.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030708, intron 1 of 10)	CpG	953.0	NM_030708	80892.0	Mm.41522	NM_030708	ENSMUSG00000025255	Zfhx4	A930021B15|C130041O22Rik|Zfh-4|Zfh4	zinc finger homeodomain 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127212660-2	chr7	127212160	127213160	+	888.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016754, intron 1 of 6)	ID_B1|SINE|B4	1052.0	NM_016754	17907.0	Mm.14526	NM_016754	ENSMUSG00000030672	Mylpf	2410014J02Rik|MLC-2|Mlc2	myosin light chain, phosphorylatable, fast skeletal muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11385483-2	chr16	11384983	11385983	+	888.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 4 of 20)	intron (NM_028964, intron 4 of 20)	-20165.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144687903-2	chr3	144687403	144688403	+	888.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019464, exon 9 of 9)	3' UTR (NM_019464, exon 9 of 9)	32432.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170355122-3	chr2	170354624	170355624	+	888.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029815, intron 11 of 12)	MLT1B|LTR|ERVL-MaLR	-1237.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-55936674-2	chr9	55936174	55937174	+	888.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357652, intron 1 of 32)	intron (NM_001357652, intron 1 of 32)	1445.0	NM_001357652	244891.0	Mm.86588	NM_175536	ENSMUSG00000034007	Scaper	C430017I08|D530014O03Rik|Zfp291	S phase cyclin A-associated protein in the ER	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-140815919-4	chr6	140815420	140816420	+	888.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	189035.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106289649-3	chr11	106289145	106290145	+	888.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12251.0	NM_008117	14599.0	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50926182-2	chr14	50925682	50926682	+	888.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009687, exon 4 of 5)	exon (NM_009687, exon 4 of 5)	1233.0	NM_009687	11792.0	Mm.203	NM_009687	ENSMUSG00000035960	Apex1	APE|Apex|HAP1|Ref-1	apurinic/apyrimidinic endonuclease 1	protein-coding	5.5	12.0	10.5	7.0	21.0	11.5
Merged-chr5-81022198-7	chr5	81021728	81022728	+	888.4761960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198702, intron 1 of 27)	intron (NM_198702, intron 1 of 27)	635.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.5	4.5	5.0	0.0	0.0	0.0
Merged-chr18-13031860-4	chr18	13031347	13032347	+	888.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24857.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72374987-4	chr6	72374467	72375467	+	888.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016872, intron 1 of 2)	intron (NM_016872, intron 1 of 2)	5501.0	NM_001080742	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-12171640-6	chr4	12171161	12172161	+	888.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310743, intron 1 of 7)	CpG	354.0	NM_001310743	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-55963349-4	chr17	55962833	55963833	+	888.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028381, intron 3 of 7)	intron (NM_028381, intron 3 of 7)	-3932.0	NR_108021	100504333.0	Mm.391908	NR_108021	ENSMUSG00000097077	Gm16712	-	predicted gene, 16712	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43818993-3	chr4	43818504	43819504	+	888.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	2429.0	NM_019474	29846.0	Mm.377121	NM_019474	ENSMUSG00000110970	Olfr156	MOR262-6|OR37B|Olfr37b|mOR37b	olfactory receptor 156	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143086520-3	chr7	143086006	143087006	+	888.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020277, intron 5 of 24)	intron (NM_020277, intron 5 of 24)	8136.0	NM_020277	56843.0	Mm.286668	NM_020277	ENSMUSG00000009246	Trpm5	9430099A16Rik|LTrpC-5|Ltrpc5|Mtr1	transient receptor potential cation channel, subfamily M, member 5	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr3-131218478-3	chr3	131217973	131218973	+	888.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276403, intron 11 of 11)	intron (NM_001276403, intron 11 of 11)	53628.0	NM_008212	15107.0	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107921514-3	chr4	107920982	107921982	+	888.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009949, intron 1 of 4)	intron (NM_009949, intron 1 of 4)	2107.0	NM_009949	12896.0	Mm.307620	NM_009949	ENSMUSG00000028607	Cpt2	AI323697|CPTII	carnitine palmitoyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85800389-4	chr8	85799910	85800910	+	888.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028007, intron 6 of 17)	intron (NM_028007, intron 6 of 17)	40539.0	NM_028007	71927.0	Mm.61018	NM_028007	ENSMUSG00000031703	Itfg1	2310047C21Rik|AI314457|Cda08|D8Wsu49e	integrin alpha FG-GAP repeat containing 1	protein-coding	23.0	24.5	30.5	18.5	25.5	28.5
Merged-chr3-135851796-4	chr3	135851299	135852299	+	888.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026228, intron 3 of 8)	Tigger20a|DNA|TcMar-Tigger	-11530.0	NR_040540	71038.0	Mm.410798	NR_040540	ENSMUSG00000106306	4933401H06Rik	-	RIKEN cDNA 4933401H06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166746684-3	chr2	166746189	166747189	+	888.4166869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTRETN_Mm|LTR|ERVK	-32857.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31689234-4	chr2	31688751	31689751	+	888.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153862)	promoter-TSS (NR_153862)	714.0	NM_001283046	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116603524-2	chr11	116603024	116604024	+	888.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167680, intron 9 of 18)	intron (NM_001167680, intron 9 of 18)	9837.0	NM_009591	11298.0	Mm.42233	NM_009591	ENSMUSG00000020804	Aanat	AA-NAT|Nat-2|Nat4|Snat	arylalkylamine N-acetyltransferase	protein-coding	0.0	0.0	0.0	0.0	4.0	1.0
Merged-chr2-130930153-2	chr2	130929647	130930647	+	888.416626	f0_balb.idr|f1_balb.idr	intron (NM_009730, intron 1 of 28)	intron (NM_009730, intron 1 of 28)	23652.0	NM_009730	11990.0	Mm.119936	NM_009730	ENSMUSG00000027312	Atrn	AW558010|Mgca|mg	attractin	protein-coding	6.5	7.0	5.0	13.5	17.5	10.5
Merged-chr17-87286286-4	chr17	87285787	87286787	+	888.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 1 of 19)	intron (NM_028639, intron 1 of 19)	3401.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-29989417-4	chr16	29988885	29989885	+	888.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10261.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86634591-4	chr11	86634071	86635071	+	888.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 7 of 11)	intron (NM_001356531, intron 7 of 11)	36704.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128128892-4	chr7	128128360	128129360	+	888.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021334)	promoter-TSS (NM_021334)	-708.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	22.0	42.5	43.0	23.0	38.0	31.5
Merged-chr11-72221440-4	chr11	72220895	72221895	+	888.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5803.0	NM_026068	67279.0	Mm.159496	NM_026068	ENSMUSG00000020801	Med31	3110004H13Rik|CGI-125|l11Jus15	mediator complex subunit 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142401926-4	chr5	142401426	142402426	+	888.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_199068, exon 1 of 9)	exon (NM_199068, exon 1 of 9)	429.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46523261-4	chr17	46522749	46523749	+	888.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081335, intron 17 of 40)	intron (NM_001081335, intron 17 of 40)	23139.0	NM_001081335	78309.0	Mm.329076	NM_001081335	ENSMUSG00000040327	Cul9	1810035I07Rik|Cul-9|Parc|mKIAA0708	cullin 9	protein-coding	6.5	17.5	11.0	4.5	14.5	8.0
Merged-chr15-6391355-2	chr15	6390855	6391855	+	888.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	4607.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16229966-4	chr7	16229499	16230499	+	888.36908	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7967.0	NM_027883	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	40.0	171.5	108.0	93.0	193.5	171.0
Merged-chr11-3477679-2	chr11	3477179	3478179	+	888.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_028317, intron 2 of 3)	intron (NR_028317, intron 2 of 3)	-10548.0	NM_172791	237625.0	Mm.100476	NM_172791	ENSMUSG00000034579	Pla2g3	-	phospholipase A2, group III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127636176-2	chr10	127635676	127636676	+	888.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6810.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17485606-3	chr10	17485114	17486114	+	888.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-237614.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101212049-2	chr11	101211549	101212549	+	888.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_007970, intron 6 of 20)	intron (NM_007970, intron 6 of 20)	14414.0	NM_007970	14055.0	Mm.5027	NM_007970	ENSMUSG00000006920	Ezh1	ENX-2	enhancer of zeste 1 polycomb repressive complex 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78092851-3	chr10	78092325	78093325	+	888.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23457.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94105125-2	chr13	94104625	94105625	+	888.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 1 of 3)	intron (NM_172589, intron 1 of 3)	47329.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129626119-4	chr6	129625692	129626692	+	888.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2328.0	NM_001286018	27007.0	Mm.8217	NM_033078	ENSMUSG00000030149	Klrk1	D6H12S2489E|NKG2-D|Nkg2d	killer cell lectin-like receptor subfamily K, member 1	protein-coding	29.5	58.5	81.5	60.5	41.0	81.0
Merged-chr15-100028318-3	chr15	100027821	100028821	+	888.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10343.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-72105650-4	chr1	72105130	72106130	+	888.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100435.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130900012-3	chr4	130899493	130900493	+	888.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13341.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13644664-3	chr16	13644181	13645181	+	888.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358452, intron 11 of 22)	L1MC4|LINE|L1	23489.0	NM_001358452	74108.0	Mm.182350	NM_028761	ENSMUSG00000022685	Parn	1200003I18Rik|DAN	poly(A)-specific ribonuclease (deadenylation nuclease)	protein-coding	2.0	2.5	2.0	2.0	2.5	1.0
Merged-chr2-131159622-3	chr2	131159128	131160128	+	888.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_154887, intron 1 of 6)	intron (NR_154887, intron 1 of 6)	453.0	NR_154887	67326.0	Mm.27711	NM_026091	ENSMUSG00000027327	1700037H04Rik	-	RIKEN cDNA 1700037H04 gene	protein-coding	7.5	20.0	21.0	15.5	22.5	18.5
Merged-chr7-66383801-2	chr7	66383301	66384301	+	888.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 1 of 33)	intron (NM_146191, intron 1 of 33)	-2077.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	37.5	62.0	68.0	19.0	30.5	38.0
Merged-chr13-3897111-4	chr13	3896635	3897635	+	888.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019671, intron 3 of 11)	intron (NM_019671, intron 3 of 11)	-3554.0	NM_001047159	56349.0	Mm.22261	NM_019671	ENSMUSG00000021215	Net1	Net1a|mNET1	neuroepithelial cell transforming gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-114458490-3	chr13	114458001	114459001	+	888.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301375, intron 1 of 5)	intron (NM_001301375, intron 1 of 5)	450.0	NM_001301373	14313.0	Mm.4913	NM_008046	ENSMUSG00000021765	Fst	AL033346|FS	follistatin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32846243-5	chr2	32845758	32846758	+	888.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113569, intron 1 of 19)	CpG	974.0	NM_009295	20910.0	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135982207-4	chr4	135981682	135982682	+	888.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025411, intron 3 of 5)	L1MA5|LINE|L1	5062.0	NM_025411	66193.0	Mm.29131	NM_025411	ENSMUSG00000028669	Pithd1	1110049F12Rik|AA408179|Trp26	PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1	protein-coding	61.0	209.0	126.5	70.5	232.5	120.0
Merged-chr1-64933214-4	chr1	64932762	64933762	+	888.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 2 of 7)	intron (NM_001039493, intron 2 of 7)	23562.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73748387-6	chr15	73747915	73748915	+	888.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008975, exon 1 of 6)	5' UTR (NM_008975, exon 1 of 6)	389.0	NM_008975	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-177188938-3	chr1	177188436	177189436	+	888.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011785, intron 1 of 12)	intron (NM_011785, intron 1 of 12)	59831.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94173273-2	chr8	94172773	94173773	+	888.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008630, intron 2 of 2)	intron (NM_008630, intron 2 of 2)	655.0	NM_008630	17750.0	Mm.147226	NM_008630	ENSMUSG00000031762	Mt2	AA409533|MT-II|Mt-2	metallothionein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-98234316-2	chr6	98233816	98234816	+	888.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108438.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133109388-4	chr4	133108862	133109862	+	888.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21271.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	5.5	6.5	11.0	32.5	39.0	36.0
Merged-chr5-72330530-4	chr5	72330052	72331052	+	888.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122756, intron 15 of 21)	intron (NM_001122756, intron 15 of 21)	127209.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116456002-4	chr6	116455527	116456527	+	888.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009662, intron 1 of 13)	intron (NM_009662, intron 1 of 13)	5151.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50735598-4	chr17	50735105	50736105	+	888.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001285991, exon 23 of 23)	3' UTR (NM_001285991, exon 23 of 23)	36924.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	18.0	15.5	21.5	14.5	2.0	4.5
Merged-chr2-150783014-3	chr2	150782508	150783508	+	888.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-3788.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24886055-3	chr7	24885552	24886552	+	888.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360125, intron 3 of 5)	intron (NM_001360125, intron 3 of 5)	1139.0	NM_001360115	20085.0	Mm.300281	NM_023133	ENSMUSG00000040952	Rps19	Dsk3	ribosomal protein S19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116429089-3	chr11	116428589	116429589	+	888.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5005.0	NM_176902	319370.0	Mm.258466	NM_176902	ENSMUSG00000050628	Ubald2	1110014K08Rik|D030012E24Rik|Fam100b	UBA-like domain containing 2	protein-coding	3.5	4.5	1.5	2.0	2.0	0.5
Merged-chr17-85574778-3	chr17	85574276	85575276	+	888.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43620.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73146943-4	chr14	73146472	73147472	+	888.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033185, intron 1 of 15)	RMER6A|LTR|ERVK	4187.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116123755-4	chr9	116123244	116124244	+	888.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 3 of 6)	Lx9|LINE|L1	51619.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3905685-4	chr5	3905169	3906169	+	888.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11736.0	NM_172135	545725.0	Mm.99593	NM_172135	ENSMUSG00000040429	Mterf1a	4931431L11Rik|9230106K09Rik|Mterf|Mterf1|mTERF1b	mitochondrial transcription termination factor 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103745502-4	chr3	103744998	103745998	+	888.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010432, intron 14 of 15)	intron (NM_010432, intron 14 of 15)	-7497.0	NM_133859	99543.0	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-60824101-4	chr15	60823622	60824622	+	888.1875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030696, exon 1 of 3)	non-coding (NR_030696, exon 1 of 3)	958.0	NM_001162926	399603.0	Mm.411968	NM_207269	ENSMUSG00000072568	Fam84b	BF642811|D330050I23Rik	family with sequence similarity 84, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136132162-4	chr1	136131745	136132745	+	888.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	855.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55519834-4	chr16	55519333	55520333	+	888.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25102.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109987908-3	chr4	109987447	109988447	+	888.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9922.0	NM_172296	242620.0	Mm.32825	NM_172296	ENSMUSG00000047143	Dmrta2	Dmrt5	doublesex and mab-3 related transcription factor like family A2	protein-coding	0.0	1.0	0.0	0.0	1.0	0.0
Merged-chr7-100988239-3	chr7	100987732	100988732	+	888.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23766.0	NM_001302347	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3433379-2	chr5	3432879	3433879	+	888.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 4 of 7)	intron (NM_009873, intron 4 of 7)	89486.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164656027-4	chr2	164655536	164656536	+	888.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039501)	promoter-TSS (NM_001039501)	-10.0	NM_001039501	629756.0	Mm.189007	NM_001039501	ENSMUSG00000070529	Wfdc10	Gm120	WAP four-disulfide core domain 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35040322-2	chr9	35039822	35040822	+	888.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76406.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	1.5	1.5	2.5	3.5	7.0	2.0
Merged-chr18-39615993-2	chr18	39615493	39616493	+	888.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-128748.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-18646608-2	chr19	18646109	18647109	+	888.166626	f0_balb.idr|f1_c57bl6.idr	intron (NM_145497, intron 8 of 8)	B3A|SINE|B2	14593.0	NM_145497	225994.0	Mm.211595	NM_145497	ENSMUSG00000037847	Nmrk1	AA408380|D630020N23Rik|Nrk1	nicotinamide riboside kinase 1	protein-coding	15.0	17.0	21.0	26.0	27.5	29.5
Merged-chr12-71981446-4	chr12	71980951	71981951	+	888.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026102, intron 22 of 25)	intron (NM_026102, intron 22 of 25)	89540.0	NM_181752	238252.0	Mm.390508	NM_181752	ENSMUSG00000043398	Gpr135	PAFR	G protein-coupled receptor 135	protein-coding	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr6-90575595-4	chr6	90575121	90576121	+	888.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356412, intron 12 of 22)	intron (NM_001356412, intron 12 of 22)	24828.0	NM_027406	107747.0	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100080996-4	chr15	100080479	100081479	+	888.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037311, intron 3 of 3)	RSINE1|SINE|B4	42315.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116586980-4	chr11	116586474	116587474	+	888.1124880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5527.0	NM_173755	217342.0	Mm.243950	NM_173755	ENSMUSG00000020802	Ube2o	9630022H21|B230113M03Rik|E2-230K|mKIAA1734	ubiquitin-conjugating enzyme E2O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78586479-2	chr9	78585979	78586979	+	888.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_172773, intron 1 of 10)	intron (NM_172773, intron 1 of 10)	1566.0	NM_172773	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	2.0	2.5	4.5	2.0	2.0	5.5
Merged-chr11-114577077-2	chr11	114576577	114577577	+	888.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-91466.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-99894956-2	chr14	99894456	99895456	+	888.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010636, intron 6 of 6)	intron (NM_010636, intron 6 of 6)	254840.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9031111-2	chr3	9030610	9031610	+	888.0833130000001	f0_c57.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	-26387.0	NM_001357075	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	14.0	16.0	10.0	6.5	3.5	3.0
Merged-chr6-42296369-4	chr6	42295892	42296892	+	888.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013491, intron 7 of 22)	intron (NM_013491, intron 7 of 22)	9707.0	NM_013491	12723.0	Mm.386757	NM_013491	ENSMUSG00000029862	Clcn1	Clc-1|Clc1|SMCC1|adr|mto|myotonia|nmf355	chloride channel, voltage-sensitive 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-12208337-3	chr2	12207838	12208838	+	888.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001309, intron 13 of 29)	intron (NM_001001309, intron 13 of 29)	-92908.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-80331288-4	chr4	80330785	80331785	+	888.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-502928.0	NM_031202	22178.0	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118101304-4	chr10	118100802	118101802	+	888.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40485.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	18.0	34.0	25.5	35.0	40.0	36.5
Merged-chr1-43472173-4	chr1	43471646	43472646	+	888.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	26395.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50181159-3	chr17	50180673	50181673	+	888.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 1 of 9)	intron (NM_181397, intron 1 of 9)	9324.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75641959-4	chr7	75641454	75642454	+	888.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	186420.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	25.0	31.5	23.5	51.5	44.5	65.0
Merged-chr5-31198653-4	chr5	31198074	31199074	+	888.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175311)	TTS (NM_175311)	3468.0	NM_001177901	101023.0	Mm.45033	NM_175311	ENSMUSG00000043059	Zfp513	AW990386|D430028M17Rik|Znf513	zinc finger protein 513	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-53775263-3	chr1	53774739	53775739	+	888.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133810, intron 2 of 7)	intron (NM_133810, intron 2 of 7)	9976.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	120.0	217.0	158.5	107.0	200.0	111.0
Merged-chr12-8320210-4	chr12	8319682	8320682	+	888.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021429, intron 2 of 6)	intron (NM_021429, intron 2 of 6)	6749.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73593076-4	chr7	73592544	73593544	+	888.0125119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34649.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97291528-3	chr6	97291054	97292054	+	888.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 23 of 23)	intron (NM_145148, intron 23 of 23)	-38774.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	2.0	17.0	21.0	10.0	6.5	0.5
Merged-chr12-102378543-2	chr12	102378043	102379043	+	888.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 7 of 9)	intron (NM_177620, intron 7 of 9)	61270.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83680685-2	chr7	83680185	83681185	+	888.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001360087, exon 5 of 19)	exon (NM_001360087, exon 5 of 19)	-25190.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60373106-3	chr10	60372607	60373607	+	888.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001159572)	TTS (NM_001159572)	26256.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124779821-3	chr6	124779306	124780306	+	888.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302555)	promoter-TSS (NM_001302555)	-79.0	NM_001302555	16977.0	Mm.3207	NM_013588	ENSMUSG00000030125	Lrrc23	4921537K05Rik|B7|Lrpb7	leucine rich repeat containing 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108320641-4	chr8	108320153	108321153	+	888.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	264024.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97341736-2	chr6	97341234	97342234	+	888.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 8 of 23)	intron (NM_145148, intron 8 of 23)	-88954.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	5.5	17.0	1.5	0.0	2.0	0.0
Merged-chr19-59020997-4	chr19	59020473	59021473	+	888.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 9 of 16)	intron (NM_001114312, intron 9 of 16)	55096.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-24679707-1	chr1	24679207	24680207	+	888.0	f0_balb.idr	intron (NM_001310483, intron 1 of 15)	intron (NM_001310483, intron 1 of 15)	789.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128269357-2	chr10	128268857	128269857	+	888.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133997, exon 2 of 2)	exon (NM_133997, exon 2 of 2)	-1141.0	NM_019963	20847.0	Mm.293120	NM_019963	ENSMUSG00000040033	Stat2	1600010G07Rik|AW496480	signal transducer and activator of transcription 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133341865-1	chr4	133341365	133342365	+	888.0	f1_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2550.0	NM_199306	230796.0	Mm.226576	NM_199306	ENSMUSG00000037622	Wdtc1	Gm695|adipose|adp	WD and tetratricopeptide repeats 1	protein-coding	2.0	2.5	1.5	0.0	2.0	0.0
Merged-chr6-97819162-4	chr6	97818656	97819656	+	888.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	12098.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	28.0	99.5	73.5	22.0	87.5	47.0
Merged-chr2-90894431-2	chr2	90893937	90894937	+	888.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026688)	TTS (NM_026688)	8651.0	NM_026161	67445.0	Mm.258993	NM_026161	ENSMUSG00000040794	C1qtnf4	0710001E10Rik|9430004J15Rik|CTRP4	C1q and tumor necrosis factor related protein 4	protein-coding	0.5	0.0	5.5	0.0	0.0	1.5
Merged-chr2-144197240-2	chr2	144196740	144197740	+	888.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7950.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43767124-2	chr13	43766624	43767624	+	888.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CCCCAG)n|Simple_repeat|Simple_repeat	-17988.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-41445309-1	chr9	41444809	41445809	+	888.0	f0_balb.idr	intron (NR_131928, intron 3 of 4)	intron (NR_131928, intron 3 of 4)	-29584.0	NR_131931	73144.0	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	3.0	4.5	1.5	0.0	39.0	13.0
Merged-chr3-148899562-1	chr3	148899062	148900062	+	888.0	f0_balb.idr	intron (NM_001081298, intron 1 of 23)	intron (NM_001081298, intron 1 of 23)	55073.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr9-66136152-2	chr9	66135652	66136652	+	888.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026635, intron 3 of 4)	intron (NM_026635, intron 3 of 4)	9541.0	NM_026635	68250.0	Mm.27107	NM_026635	ENSMUSG00000032381	Fam96a	5730536A07Rik	family with sequence similarity 96, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr8-95014299-3	chr8	95013793	95014793	+	888.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001198894)	TTS (NM_001198894)	-3399.0	NM_173036	54672.0	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76606208-2	chr15	76605708	76606708	+	888.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361485, intron 1 of 36)	intron (NM_001361485, intron 1 of 36)	1383.0	NM_053193	94230.0	Mm.45141	NM_053193	ENSMUSG00000034022	Cpsf1	CPSF160	cleavage and polyadenylation specific factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21035309-2	chr5	21034809	21035809	+	888.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356590)	promoter-TSS (NM_001356590)	-62.0	NM_001356590	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34649843-2	chr17	34649356	34650356	+	888.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_017406, intron 5 of 17)	intron (NM_017406, intron 5 of 17)	2710.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	18.5	23.0	21.5	18.5	11.5	8.5
Merged-chr2-120730879-3	chr2	120730413	120731413	+	888.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026891, exon 2 of 28)	exon (NM_026891, exon 2 of 28)	604.0	NM_026891	68968.0	Mm.2289	NM_026891	ENSMUSG00000027284	Cdan1	1500015A01Rik|AI448026|AW492297|CDA-I|CDA1|CDAI	congenital dyserythropoietic anemia, type I (human)	protein-coding	6.0	0.0	4.0	3.5	8.0	5.0
Merged-chr10-39261734-1	chr10	39261234	39262234	+	888.0	f0_balb.idr	Intergenic	Intergenic	-97940.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32159177-4	chr16	32158667	32159667	+	888.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347181, intron 1 of 2)	intron (NM_001347181, intron 1 of 2)	6427.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	0.0	10.0	4.5	0.0	2.5	7.5
Merged-chr7-24385047-4	chr7	24384547	24385547	+	888.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008433, exon 9 of 9)	3' UTR (NM_008433, exon 9 of 9)	-14581.0	NM_028047	71997.0	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	3.0	2.5	2.0	0.0	2.5	5.0
Merged-chr9-45249526-2	chr9	45249026	45250026	+	888.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001198971, exon 5 of 5)	3' UTR (NM_001198971, exon 5 of 5)	17181.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-81399336-1	chr8	81398836	81399836	+	888.0	f0_balb.idr	intron (NM_001024617, intron 1 of 24)	intron (NM_001024617, intron 1 of 24)	56774.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	4.0	0.0	1.0	4.5	1.0	0.5
Merged-chr18-67699234-2	chr18	67698734	67699734	+	888.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008977, intron 2 of 9)	intron (NM_008977, intron 2 of 9)	25387.0	NM_001127177	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	30.0	40.5	42.0	28.5	90.0	25.5
Merged-chr7-73556978-3	chr7	73556533	73557533	+	888.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037569, intron 1 of 4)	intron (NR_037569, intron 1 of 4)	1362.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9990556-2	chr19	9990042	9991042	+	888.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011913, exon 7 of 12)	exon (NM_011913, exon 7 of 12)	7896.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	3.0	0.0	2.0	0.0	0.0	3.0
Merged-chr18-60202324-3	chr18	60201825	60202825	+	888.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9752.0	NM_001033767	240327.0	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	0.0	0.0	2.5	0.0	1.0	0.0
Merged-chr7-89415943-3	chr7	89415459	89416459	+	888.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10347.0	NR_102276	101521.0	Mm.26902	NR_102276	ENSMUSG00000109311	AI314278	-	expressed sequence AI314278	ncRNA	1.0	0.0	0.0	0.0	0.5	0.0
Merged-chr12-12246591-1	chr12	12246091	12247091	+	888.0	f1_c57bl6.idr	Intergenic	Intergenic	-15548.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	12.5	31.5	12.5	2.5	25.5	12.0
Merged-chr8-124150145-3	chr8	124149632	124150632	+	888.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81262.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	4.0	33.5	9.0	0.0	0.0	2.5
Merged-chr10-127170042-2	chr10	127169542	127170542	+	888.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008080, exon 8 of 11)	exon (NM_008080, exon 8 of 11)	4211.0	NM_001358578	14421.0	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54758777-2	chr11	54758277	54759277	+	888.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178626, intron 1 of 5)	B4A|SINE|B4	28926.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44482294-4	chr9	44481799	44482799	+	888.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357490)	promoter-TSS (NM_001357490)	-526.0	NM_001357490	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107099336-3	chr3	107098859	107099859	+	888.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-2208.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	27.0	72.0	82.5	21.5	84.0	64.5
Merged-chr10-11148043-2	chr10	11147543	11148543	+	888.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger1|DNA|TcMar-Tigger	-1387.0	NM_001077707	268281.0	Mm.133101	NM_172937	ENSMUSG00000090112	Shprh	2610103K11Rik|AA450458|AU024614|BC006883|D230017O13Rik|E130018M05	SNF2 histone linker PHD RING helicase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23211232-3	chr11	23210735	23211735	+	888.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44806.0	NM_001035226	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	4.0	25.0	12.5	33.0	12.5	15.0
Merged-chr5-139341614-2	chr5	139341114	139342114	+	888.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_197980, intron 2 of 2)	intron (NM_197980, intron 2 of 2)	3552.0	NM_197980	68033.0	Mm.261064	NM_197980	ENSMUSG00000045438	Cox19	1810074D02Rik|2810437L13Rik	cytochrome c oxidase assembly protein 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24481222-2	chr7	24480722	24481722	+	888.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153112)	promoter-TSS (NM_153112)	-801.0	NM_153112	260299.0	Mm.178322	NM_153112	ENSMUSG00000054793	Cadm4	Igdf4c|Igsf4c|Tsll2	cell adhesion molecule 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101938743-4	chr5	101938251	101939251	+	887.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 13 of 66)	intron (NM_172882, intron 13 of 66)	131170.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	2.0	5.0	1.5	0.0	2.5	4.5
Merged-chr18-9508574-4	chr18	9508074	9509074	+	887.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCCTG)n|Simple_repeat|Simple_repeat	-58420.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0.5	0.0	1.5	0.0	0.0	0.0
Merged-chr5-117884579-4	chr5	117884071	117885071	+	887.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 2 of 27)	ORR1E|LTR|ERVL-MaLR	17732.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79865493-4	chr2	79864999	79865999	+	887.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009978, intron 11 of 12)	intron (NM_001009978, intron 11 of 12)	42900.0	NM_001009979	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125699771-4	chr8	125699272	125700272	+	887.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR41C|LTR|ERV1	29954.0	NM_028908	74393.0	Mm.41709	NM_028908	ENSMUSG00000050930	Map10	4933403G14Rik|AI835009|mKIAA1383	microtubule-associated protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85337540-2	chr12	85337040	85338040	+	887.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145138, intron 1 of 21)	intron (NM_145138, intron 1 of 21)	1822.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127646488-2	chr7	127645988	127646988	+	887.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-31216.0	NR_155451	320683.0	Mm.156718	NM_177226	ENSMUSG00000045639	Zfp629	9330199A09Rik|Znf629	zinc finger protein 629	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156540770-4	chr2	156540370	156541370	+	887.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013510, exon 22 of 22)	3' UTR (NM_013510, exon 22 of 22)	-6706.0	NM_026661	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	38.5	40.0	34.0	26.5	49.5	32.5
Merged-chr12-100520464-4	chr12	100519946	100520946	+	887.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 1 of 19)	CpG	376.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21859750-3	chr9	21859245	21860245	+	887.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-7110.0	NM_177030	319899.0	Mm.128153	NM_177030	ENSMUSG00000032198	Dock6	2410095B20Rik|4931431C02Rik|C330023D02Rik|mKIAA1395	dedicator of cytokinesis 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25476137-3	chr17	25475648	25476648	+	887.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027951, intron 5 of 5)	intron (NM_027951, intron 5 of 5)	4558.0	NM_027951	71840.0	Mm.282330	NM_027951	ENSMUSG00000024175	Tekt4	1700010L19Rik	tektin 4	protein-coding	0.5	12.5	0.0	0.0	3.5	0.0
Merged-chr11-115182553-4	chr11	115182117	115183117	+	887.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025400)	TTS (NM_025400)	4699.0	NM_025400	66176.0	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	0.0	5.0	0.0	0.0	15.5	1.5
Merged-chr16-55819701-4	chr16	55819217	55820217	+	887.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159395, intron 2 of 12)	intron (NM_001159395, intron 2 of 12)	2421.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32269365-2	chr17	32268865	32269865	+	887.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286630, intron 1 of 19)	B3|SINE|B2	14758.0	NM_198094	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11658999-4	chr11	11658509	11659509	+	887.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26916.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr7-30952835-2	chr7	30952335	30953335	+	887.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_011680, intron 7 of 9)	intron (NM_011680, intron 7 of 9)	3968.0	NM_011680	22282.0	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57582577-4	chr6	57582073	57583073	+	887.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025992, intron 1 of 22)	MER57E1|LTR|ERV1	1581.0	NM_025992	67138.0	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	8.0	9.5	11.5	5.0	8.0	12.0
Merged-chr2-178078136-2	chr2	178077636	178078636	+	887.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162922, intron 1 of 3)	RMER17B|LTR|ERVK	289.0	NM_001162922	353208.0	Mm.381194	NM_001162922	ENSMUSG00000078861	Zfp931	2810021G02Rik	zinc finger protein 931	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139296778-4	chr7	139296276	139297276	+	887.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48294.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	6.5	22.5	10.0	13.0	13.0	11.0
Merged-chr5-130139582-4	chr5	130139068	130140068	+	887.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5320.0	NM_172509	212919.0	Mm.55812	NM_172509	ENSMUSG00000034110	Kctd7	4932409E18|9430010P06Rik	potassium channel tetramerisation domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25047994-4	chr15	25047459	25048459	+	887.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	365805.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31162250-3	chr2	31161752	31162752	+	887.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178760, intron 1 of 17)	intron (NM_178760, intron 1 of 17)	9936.0	NM_178760	277463.0	Mm.236074	NM_178760	ENSMUSG00000000194	Gpr107	9930033D15Rik|AI790205|C530034M11|mKIAA1624	G protein-coupled receptor 107	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95557478-4	chr10	95556991	95557991	+	887.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358996, intron 1 of 4)	B2_Mm2|SINE|B2	1830.0	NR_037212	100526463.0		NR_037212	ENSMUSG00000092867	Mir3058	mir-3058|mmu-mir-3058	microRNA 3058	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71149727-3	chr6	71149200	71150200	+	887.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5320.0	NM_178413	232078.0	Mm.37547	NM_178413	ENSMUSG00000054474	Thnsl2	BC051244|TSH2	threonine synthase-like 2 (bacterial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80883203-6	chr7	80882696	80883696	+	887.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18073.0	NR_152101	71968.0	Mm.274226	NM_028026	ENSMUSG00000025722	Wdr73	1200011I23Rik|2410008B13Rik|AI848574|C85352	WD repeat domain 73	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151948156-3	chr1	151947617	151948617	+	887.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 3 of 5)	intron (NM_197990, intron 3 of 5)	142203.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63559517-4	chr4	63559077	63560077	+	887.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144905)	promoter-TSS (NM_144905)	-650.0	NM_144905	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23810015-2	chr18	23809515	23810515	+	887.7999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	6045.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-116977168-4	chr2	116976654	116977654	+	887.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77002.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6067575-3	chr15	6067083	6068083	+	887.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22879.0	NR_155429	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116671538-7	chr6	116670942	116671942	+	887.761902	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178045, intron 1 of 10)	intron (NM_178045, intron 1 of 10)	2394.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-51730970-4	chr15	51730470	51731470	+	887.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134491.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	0.0	1.5	0.5	0.0	5.0	2.5
Merged-chr14-15064324-4	chr14	15063818	15064818	+	887.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	243503.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78022410-4	chr9	78021897	78022897	+	887.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-29561.0	NM_008103	14531.0	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1	protein-coding	0.0	1.5	0.0	0.0	1.5	0.0
Merged-chr13-109759929-4	chr13	109759440	109760440	+	887.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 5 of 16)	intron (NM_011056, intron 5 of 16)	-143869.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-10132766-4	chr10	10132276	10133276	+	887.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-231736.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116808312-2	chr4	116807812	116808812	+	887.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026654)	promoter-TSS (NM_026654)	578.0	NM_001159581	70603.0	Mm.180333	NM_133250	ENSMUSG00000028687	Mutyh	5730495A01Rik|Mutyha|Mutyhalpha|Mutyhb|Mutyhbeta|Mutyhc|Myh	mutY DNA glycosylase	protein-coding	4.5	34.5	30.5	11.0	37.0	22.0
Merged-chr3-135505664-2	chr3	135505164	135506164	+	887.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_027288, intron 1 of 16)	intron (NM_027288, intron 1 of 16)	20053.0	NM_027288	110173.0	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-40694651-4	chr3	40694143	40695143	+	887.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175515, intron 13 of 15)	LTR16A|LTR|ERVL	-14228.0	NM_178386	73333.0	Mm.78691	NM_178386	ENSMUSG00000069041	Slc25a31	1700034J06Rik|Ant4|Sfec	solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119394523-4	chr11	119394075	119395075	+	887.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4103.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	6.0	14.0	6.5	6.0	8.5	7.0
Merged-chr7-122298756-4	chr7	122298259	122299259	+	887.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	MIRb|SINE|MIR	9634.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-33027351-4	chr12	33026945	33027945	+	887.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65430.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	2.5	2.0	2.0	2.5	2.0	0.0
Merged-chr3-135211968-4	chr3	135211396	135212396	+	887.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173762)	promoter-TSS (NM_173762)	-667.0	NM_173762	229841.0	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53421961-3	chr19	53421467	53422467	+	887.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31333.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158410456-3	chr2	158409963	158410963	+	887.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291137, intron 1 of 30)	CpG	610.0	NM_001291138	228850.0	Mm.398185	NM_177227	ENSMUSG00000027652	Ralgapb	AI507211|B230339M05Rik|p170	Ral GTPase activating protein, beta subunit (non-catalytic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-40311302-4	chr8	40310792	40311792	+	887.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030110, intron 1 of 14)	ORR1E|LTR|ERVL-MaLR	3241.0	NM_030110	78506.0	Mm.169893	NM_030110	ENSMUSG00000039478	Micu3	2900075B16Rik|Efha2	mitochondrial calcium uptake family, member 3	protein-coding	24.0	43.5	53.5	13.0	10.0	17.5
Merged-chr7-98869274-4	chr7	98868757	98869757	+	887.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30412.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125878191-4	chr7	125877678	125878678	+	887.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001101488)	TTS (NM_001101488)	170308.0	NM_001358287	233865.0	Mm.274389	NM_001081022	ENSMUSG00000032743	D430042O09Rik	Kiaa0556	RIKEN cDNA D430042O09 gene	protein-coding	1.0	1.0	1.0	3.0	19.0	3.5
Merged-chr15-63978218-3	chr15	63977721	63978721	+	887.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144846, intron 1 of 11)	MTC|LTR|ERVL-MaLR	19845.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-89892316-3	chr13	89891827	89892827	+	887.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028012, intron 7 of 7)	L1_Mur2|LINE|L1	-149815.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	12.0	2.0	0.0	0.0	1.0	1.0
Merged-chr4-143216464-3	chr4	143215964	143216964	+	887.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-3755.0	NM_001256380	110593.0	Mm.332020	NM_001081355	ENSMUSG00000057637	Prdm2	4833427P12Rik|E330024L24Rik|Gm1033|Gm19732|KMT8|Riz|Riz1|Znfpr1c1	PR domain containing 2, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28329383-3	chr17	28328868	28329868	+	887.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357628, intron 3 of 5)	intron (NM_001357628, intron 3 of 5)	803.0	NM_001357628	19896.0	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33683908-4	chr16	33683434	33684434	+	887.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175256)	promoter-TSS (NM_175256)	-532.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139249621-4	chr7	139249177	139250177	+	887.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098636, intron 1 of 2)	intron (NM_001098636, intron 1 of 2)	1195.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	4.0	21.5	27.5	11.0	34.0	17.0
Merged-chr9-44335751-2	chr9	44335226	44336226	+	887.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013551)	TTS (NM_013551)	1011.0	NM_010436	15270.0	Mm.245931	NM_010436	ENSMUSG00000049932	H2afx	AW228881|H2A.X|H2ax|Hist5-2ax|gammaH2ax	H2A histone family, member X	protein-coding	5.5	11.0	4.5	9.0	7.5	11.0
Merged-chr9-114694651-2	chr9	114694159	114695159	+	887.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146229, intron 2 of 12)	intron (NM_146229, intron 2 of 12)	5828.0	NM_146229	235661.0	Mm.128627	NM_146229	ENSMUSG00000032435	Dync1li1	1110053F02Rik|Dnclic1|LIC-1	dynein cytoplasmic 1 light intermediate chain 1	protein-coding	3.5	0.0	2.0	4.0	0.0	6.0
Merged-chr5-123132640-6	chr5	123132067	123133067	+	887.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175092)	promoter-TSS (NM_175092)	62.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47890924-5	chr19	47890416	47891416	+	887.6333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25122.0	NM_026619	68214.0	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-42866742-4	chr13	42866231	42867231	+	887.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302636, intron 1 of 12)	intron (NM_001302636, intron 1 of 12)	484.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34416110-4	chr10	34415608	34416608	+	887.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176968, intron 1 of 11)	RMER6A|LTR|ERVK	2443.0	NM_176968	319638.0	Mm.73467	NM_176968	ENSMUSG00000039480	Nt5dc1	6030401B09Rik|AW987726|Nt5c2l1	5'-nucleotidase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-72983663-4	chr14	72983160	72984160	+	887.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41943.0	NR_027860	668489.0	Mm.158324	NR_027860		Gm9199	EG668489	glycine cleavage system protein H (aminomethyl carrier) pseudogene	pseudo	5.5	0.5	0.5	8.0	1.5	0.5
Merged-chr12-99557398-2	chr12	99556898	99557898	+	887.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6443.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5050042-4	chr6	5049532	5050532	+	887.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 3 of 15)	CT-rich|Low_complexity|Low_complexity	143914.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100737354-4	chr11	100736867	100737867	+	887.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305003, intron 1 of 5)	intron (NM_001305003, intron 1 of 5)	848.0	NM_024456	19345.0	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-46832787-2	chr7	46832287	46833287	+	887.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13017.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100039564-4	chr15	100039044	100040044	+	887.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	880.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-108634190-3	chr5	108633719	108634719	+	887.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359426, intron 1 of 9)	intron (NM_001359426, intron 1 of 9)	4409.0	NM_001359426	72392.0	Mm.258324	NM_028223	ENSMUSG00000013495	Tmem175	3010001K23Rik|AI504381|mTMEM175	transmembrane protein 175	protein-coding	2.5	1.0	2.0	0.0	0.0	1.0
Merged-chr7-136331557-3	chr7	136331069	136332069	+	887.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040459)	TTS (NR_040459)	17846.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-40798714-4	chr3	40798210	40799210	+	887.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1241.0	NM_173169	20873.0	Mm.3794	NM_011495	ENSMUSG00000025758	Plk4	1700028H20|AI385771|Sak|Stk18	polo like kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-55542280-2	chr9	55541780	55542780	+	887.599976	f1_balb.idr|f1_c57bl6.idr	exon (NM_027397, exon 2 of 6)	exon (NM_027397, exon 2 of 6)	1131.0	NM_027397	104360.0	Mm.273996	NM_027397	ENSMUSG00000032318	Isl2	3110001N10Rik	insulin related protein 2 (islet 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-43239803-5	chr9	43239310	43240310	+	887.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178644)	promoter-TSS (NM_178644)	6.0	NM_178644	102644.0	Mm.246479	NM_178644	ENSMUSG00000032014	Oaf	AL024221|D130038B21Rik|D9Ucla1	out at first homolog	protein-coding	3.5	0.0	1.0	2.0	0.0	4.0
Merged-chr15-78327849-2	chr15	78327349	78328349	+	887.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358854, intron 2 of 14)	intron (NM_001358854, intron 2 of 14)	1859.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-96993354-4	chr5	96992819	96993819	+	887.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4370.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31196151-3	chr14	31195645	31196645	+	887.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347583, intron 3 of 13)	B2_Mm2|SINE|B2	10681.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79877368-4	chr11	79876863	79877863	+	887.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	85024.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	4.5	12.5	7.0	13.0	22.0	8.5
Merged-chr15-97064260-3	chr15	97063761	97064761	+	887.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8305.0	NM_027052	69354.0	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24806283-3	chr13	24805781	24806781	+	887.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024473, intron 3 of 4)	intron (NM_024473, intron 3 of 4)	4624.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67235238-3	chr15	67234762	67235762	+	887.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045140, intron 1 of 8)	ORR1E|LTR|ERVL-MaLR	8493.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	10.5	2.5	1.5	5.5	1.5	2.0
Merged-chr6-148621758-3	chr6	148621251	148622251	+	887.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7442.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-62027898-4	chr14	62027408	62028408	+	887.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	265071.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101994259-6	chr5	101993651	101994651	+	887.5166630000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	75770.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	40.5	85.5	69.0	15.5	24.0	37.5
Merged-chr4-8537456-2	chr4	8536956	8537956	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021518, intron 1 of 7)	intron (NM_021518, intron 1 of 7)	1812.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	3.0	1.5	3.5	0.5	3.5	1.0
Merged-chr12-105968214-3	chr12	105967712	105968712	+	887.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42051.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	9.5	1.5	4.0	0.0	0.0	1.0
Merged-chr3-27438388-2	chr3	27437888	27438888	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 24 of 26)	intron (NM_001356953, intron 24 of 26)	67037.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108986850-2	chr12	108986350	108987350	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 3 of 6)	intron (NM_177602, intron 3 of 6)	81367.0	NM_001163175	380785.0	Mm.342085	NM_001163175	ENSMUSG00000040867	Begain	BM948371|Gm897	brain-enriched guanylate kinase-associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-86952303-2	chr9	86951803	86952803	+	887.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63234.0	NM_001037907	382089.0	Mm.92244	NM_001037907	ENSMUSG00000047897	Ripply2	C030002E08Rik|Gm1122	ripply transcriptional repressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65394877-2	chr3	65394377	65395377	+	887.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2324.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8640118-2	chr15	8639618	8640618	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_148938, intron 8 of 9)	MLT1J|LTR|ERVL-MaLR	70689.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153213574-2	chr2	153213074	153214074	+	887.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11867.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143544464-2	chr7	143543964	143544964	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285489, intron 1 of 14)	intron (NM_001285489, intron 1 of 14)	4364.0	NM_001285490	17955.0	Mm.294625	NM_008672	ENSMUSG00000059119	Nap1l4	2810410H14Rik|AI316776|D7Wsu30e|Nap2	nucleosome assembly protein 1-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-76975840-2	chr5	76975363	76976363	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025691, intron 1 of 18)	intron (NM_025691, intron 1 of 18)	1162.0	NM_025691	66661.0	Mm.296976	NM_025691	ENSMUSG00000036323	Srp72	5730576P14Rik|72kDa|AI132477|BC019196|C77589	signal recognition particle 72	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75855898-2	chr7	75855398	75856398	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029652, intron 1 of 2)	intron (NM_029652, intron 1 of 2)	7560.0	NM_029652	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80505728-2	chr10	80505228	80506228	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139226, intron 1 of 1)	intron (NM_139226, intron 1 of 1)	10822.0	NM_139226	246086.0	Mm.250572	NM_139226	ENSMUSG00000045518	Onecut3	OC-3|Oc3	one cut domain, family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-92881041-2	chr7	92880541	92881541	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028243, intron 1 of 8)	ORR1F|LTR|ERVL-MaLR	5788.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-61638907-4	chr1	61638427	61639427	+	887.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081050, exon 1 of 23)	5' UTR (NM_001081050, exon 1 of 23)	103.0	NM_001081050	72823.0	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	2.0	0.0	2.5	1.5	5.5	0.5
Merged-chr11-100400277-2	chr11	100399777	100400777	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132425, intron 1 of 3)	intron (NR_132425, intron 1 of 3)	2161.0	NR_132425	102635937.0	Mm.421398	NR_132425		Gm12348	-	predicted gene 12348	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24686710-2	chr17	24686210	24687210	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011522, intron 2 of 3)	intron (NM_011522, intron 2 of 3)	3239.0	NM_011522	20974.0	Mm.26032	NM_011522	ENSMUSG00000007021	Syngr3	-	synaptogyrin 3	protein-coding	2.5	1.0	0.5	0.0	0.0	0.0
Merged-chr9-87171254-4	chr9	87170756	87171756	+	887.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101482, intron 2 of 3)	intron (NM_001101482, intron 2 of 3)	22028.0	NM_001359955	244958.0	Mm.335337	NM_001101482	ENSMUSG00000042761	Mrap2	BB633055	melanocortin 2 receptor accessory protein 2	protein-coding	15.5	8.0	15.5	16.0	13.5	11.0
Merged-chr4-132817028-2	chr4	132816528	132817528	+	887.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20664.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-109509153-4	chr12	109508675	109509675	+	887.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31821.0	NR_027652	17263.0	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-172399480-5	chr2	172398975	172399975	+	887.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080820, intron 1 of 6)	intron (NM_001080820, intron 1 of 6)	5681.0	NM_001276423	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124526731-3	chr5	124526220	124527220	+	887.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021430, intron 1 of 6)	L2c|LINE|L2	4671.0	NM_021430	75695.0	Mm.41180	NM_021430	ENSMUSG00000029392	Rilpl1	2900002H16Rik|6330559I19Rik|GOSPEL	Rab interacting lysosomal protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95507391-3	chr11	95506918	95507918	+	887.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7147.0	NM_130858	104079.0	Mm.22970	NM_130858	ENSMUSG00000046719	Nxph3	-	neurexophilin 3	protein-coding	0.0	0.0	0.5	2.0	0.0	2.0
Merged-chr4-122835839-4	chr4	122835350	122836350	+	887.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008917)	promoter-TSS (NM_008917)	-377.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78490803-2	chr11	78490303	78491303	+	887.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172795, exon 2 of 9)	exon (NM_172795, exon 2 of 9)	6951.0	NM_001168521	237868.0	Mm.210332	NM_172795	ENSMUSG00000050132	Sarm1	A830091I15Rik|C78606|MyD885|Sarm	sterile alpha and HEAT/Armadillo motif containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-9892756-2	chr1	9892272	9893272	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133220, intron 17 of 17)	B4|SINE|B4	-15866.0	NM_177722	240697.0	Mm.259800	NM_177722	ENSMUSG00000046101	Mcmdc2	6030422M02Rik	minichromosome maintenance domain containing 2	protein-coding	73.5	160.0	115.0	47.5	182.0	133.5
Merged-chr11-117150646-4	chr11	117150145	117151145	+	887.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001166506, exon 12 of 16)	exon (NM_001166506, exon 12 of 16)	35473.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91838005-2	chr16	91837505	91838505	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 17 of 28)	intron (NM_001110275, intron 17 of 28)	93625.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	7.0	9.0	4.0	1.0	1.5	1.5
Merged-chr2-6484264-2	chr2	6483764	6484764	+	887.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131528.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-30917338-3	chr3	30916847	30917847	+	887.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165954, intron 11 of 14)	intron (NM_001165954, intron 11 of 14)	52068.0	NM_001165954	241915.0	Mm.233173	NM_153421	ENSMUSG00000037652	Phc3	E030046K01Rik|Edr3|Hph3	polyhomeotic 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95870117-4	chr11	95869577	95870577	+	887.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008081, intron 7 of 10)	B4A|SINE|B4	11260.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	5.5	15.5	14.5	1.5	12.0	9.5
Merged-chr13-101764229-2	chr13	101763729	101764729	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 1 of 15)	intron (NM_001077495, intron 1 of 15)	3988.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28813165-2	chr7	28812665	28813665	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177301, intron 1 of 12)	intron (NM_177301, intron 1 of 12)	2275.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3671520-2	chr12	3671020	3672020	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 8 of 17)	intron (NM_001162465, intron 8 of 17)	98536.0	NM_007886	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-95830077-4	chr7	95829571	95830571	+	887.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-341173.0	NM_001310762	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13673227-2	chr16	13672727	13673727	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177552, intron 1 of 5)	intron (NM_001177552, intron 1 of 5)	1369.0	NM_025653	67118.0	Mm.223689	NM_025653	ENSMUSG00000022684	Bfar	3010001A07Rik|3110001I22Rik|AI666707|AW107665|Bar|Rnf47	bifunctional apoptosis regulator	protein-coding	10.5	40.5	28.5	13.5	39.0	31.0
Merged-chr11-97836854-2	chr11	97836355	97837355	+	887.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010688, exon 7 of 7)	3' UTR (NM_010688, exon 7 of 7)	-3925.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	3.0	4.5	10.5	2.5	12.5	6.0
Merged-chr2-167483757-2	chr2	167483257	167484257	+	887.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_170756, exon 3 of 3)	exon (NM_170756, exon 3 of 3)	-8888.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-4808844-4	chr6	4808343	4809343	+	887.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER89-int|LTR|ERV1	61537.0	NM_130877	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	0.0	0.0	6.0	0.0	0.0	2.5
Merged-chr11-52223120-3	chr11	52222610	52223610	+	887.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-8885.0	NM_011543	21402.0	Mm.42944	NM_011543	ENSMUSG00000036309	Skp1a	15kDa|2610043E24Rik|2610206H23Rik|EMC19|OCP-II|OCP2|SKP1|Tceb1l|p19A|p19Skp1	S-phase kinase-associated protein 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6747660-2	chr17	6747160	6748160	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 6 of 12)	intron (NM_009510, intron 6 of 12)	35120.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27995771-2	chr3	27995271	27996271	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 1 of 25)	Lx4B|LINE|L1	11600.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77761205-2	chr15	77760705	77761705	+	887.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_022410, exon 41 of 41)	3' UTR (NM_022410, exon 41 of 41)	-4195.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-63243048-3	chr10	63242432	63243432	+	887.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026101)	promoter-TSS (NM_026101)	-865.0	NM_030114	67345.0	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-26996128-2	chr5	26995628	26996628	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198886, intron 1 of 25)	MTC|LTR|ERVL-MaLR	-53071.0	NM_207282	13483.0	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-69204010-4	chr17	69203511	69204511	+	887.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	44655.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-80862428-4	chr13	80861942	80862942	+	887.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20942.0	NR_153410	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73324703-5	chr12	73324216	73325216	+	887.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037717, intron 5 of 15)	intron (NM_001037717, intron 5 of 15)	37868.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	4.0	12.0	9.0	6.5	7.5	12.0
Merged-chr2-13439122-4	chr2	13438622	13439622	+	887.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081084, intron 22 of 66)	intron (NM_001081084, intron 22 of 66)	52754.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100631675-4	chr15	100631186	100632186	+	887.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033872, intron 2 of 3)	intron (NM_001033872, intron 2 of 3)	3873.0	NM_001285414	207818.0	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-16526347-4	chr16	16525832	16526832	+	887.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	1079.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-40965061-3	chr8	40964552	40965552	+	887.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026840, intron 2 of 5)	ORR1F|LTR|ERVL-MaLR	38819.0	NM_026840	68797.0	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	7.5	8.5	17.5	7.0	12.5	4.5
Merged-chr10-80822201-3	chr10	80821709	80822709	+	887.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4447.0	NM_001301034	18245.0	Mm.398119	NM_008753	ENSMUSG00000035242	Oaz1	AZ-1|AZ1|Antizyme|ODC-Az|Oaz	ornithine decarboxylase antizyme 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-117558122-3	chr12	117557592	117558592	+	887.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 3 of 27)	intron (NM_175930, intron 3 of 27)	41613.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	22.0	17.0	3.0	20.0	21.0	3.5
Merged-chr6-129255179-4	chr6	129254670	129255670	+	887.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16688.0	NR_040268	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83654736-4	chr17	83654205	83655205	+	887.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22810.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114916500-4	chr6	114915990	114916990	+	887.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	5331.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101641694-4	chr4	101641201	101642201	+	887.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164585, exon 20 of 20)	3' UTR (NM_001164585, exon 20 of 20)	-6082.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102392288-6	chr12	102391815	102392815	+	887.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47498.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122888638-4	chr3	122888105	122889105	+	887.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046036, intron 5 of 5)	intron (NR_046036, intron 5 of 5)	-6467.0	NM_007980	14079.0	Mm.28398	NM_007980	ENSMUSG00000023057	Fabp2	Fabpi|I-FABP	fatty acid binding protein 2, intestinal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-133046751-4	chr7	133046247	133047247	+	887.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	-31500.0	NM_001170744	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84040682-4	chr3	84040204	84041204	+	887.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172681)	promoter-TSS (NM_172681)	-543.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-5300228-4	chr9	5299748	5300748	+	887.3666380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009807, intron 3 of 9)	intron (NM_009807, intron 3 of 9)	1731.0	NM_009807	12362.0	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107759081-2	chr4	107758581	107759581	+	887.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43178.0	NR_033496	16975.0	Mm.442134	NM_053073	ENSMUSG00000028613	Lrp8	4932703M08Rik|AA921429|AI848122|ApoER2|Lr8b	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	protein-coding	0.0	0.0	0.5	1.0	0.0	0.0
Merged-chr9-56417122-2	chr9	56416622	56417622	+	887.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172924, intron 1 of 6)	intron (NM_172924, intron 1 of 6)	928.0	NM_172924	244895.0	Mm.490331	NM_172924	ENSMUSG00000074305	Peak1	1110049L02Rik|9530046P14|AA690169|BE132841|C230081A13Rik|SGK269|mKIAA2002	pseudopodium-enriched atypical kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-3076320-2	chr17	3075820	3076820	+	887.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_003519, intron 7 of 7)	intron (NR_003519, intron 7 of 7)	7863.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr11-30900533-3	chr11	30900032	30901032	+	887.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	15174.0	NM_175490	237716.0	Mm.338361	NM_175490	ENSMUSG00000043999	Gpr75	-	G protein-coupled receptor 75	protein-coding	15.0	11.0	10.5	10.0	7.5	15.5
Merged-chr11-118178356-3	chr11	118177883	118178883	+	887.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 9 of 12)	intron (NM_001112700, intron 9 of 12)	34359.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8724023-3	chr19	8723470	8724470	+	887.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161413)	promoter-TSS (NM_001161413)	483.0	NR_002896	83673.0	Mm.292489	NR_002896	ENSMUSG00000108414	Snhg1	-	small nucleolar RNA host gene 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-62630653-4	chr2	62630144	62631144	+	887.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164477, intron 2 of 14)	intron (NM_001164477, intron 2 of 14)	15611.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62574418-3	chr11	62573932	62574932	+	887.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011706)	promoter-TSS (NM_011706)	-54.0	NM_011706	22368.0	Mm.288064	NM_011706	ENSMUSG00000018507	Trpv2	GRC|OTRPC2|VRL-1|Vrl1	transient receptor potential cation channel, subfamily V, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181930331-3	chr2	181929828	181930828	+	887.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR33|LTR|ERVK	-60898.0	NM_001205282	672125.0	Mm.489571	NM_001205282	ENSMUSG00000098505	Gm14496	-	predicted gene 14496	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-113172654-3	chr7	113172169	113173169	+	887.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30654.0	NR_045978	75239.0	Mm.381688	NR_045978	ENSMUSG00000110009	4930543E12Rik	4930545H14Rik	RIKEN cDNA 4930543E12 gene	ncRNA	0.0	2.0	0.5	0.0	0.0	4.0
Merged-chr1-184733751-3	chr1	184733245	184734245	+	887.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1252.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100508028-2	chr7	100507538	100508538	+	887.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_153527, intron 3 of 7)	intron (NM_153527, intron 3 of 7)	6777.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	16.0	49.5	34.5	0.0	12.5	14.0
Merged-chr15-5141985-3	chr15	5141499	5142499	+	887.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1862.0	NM_001013367	105787.0	Mm.207004	NM_001013367	ENSMUSG00000050697	Prkaa1	AI194361|AI450832|AL024255|AMPKalpha1|C130083N04Rik	protein kinase, AMP-activated, alpha 1 catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3796108-3	chr4	3795615	3796615	+	887.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39540.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	1.5	4.5	3.0	1.0	1.5	0.5
Merged-chr11-82867834-3	chr11	82867292	82868292	+	887.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164569, intron 1 of 7)	Tigger14a|DNA|TcMar-Tigger	2952.0	NM_001164570	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23577105-7	chr13	23576506	23577506	+	887.305969	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178204)	TTS (NM_178204)	1243.0	NM_178204	319149.0	Mm.347699	NM_178204	ENSMUSG00000099583	Hist1h3d	H3-b	histone cluster 1, H3d	protein-coding	0.0	10.0	4.0	8.0	24.5	5.5
Merged-chr16-24361934-4	chr16	24361447	24362447	+	887.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31403.0	NM_178665	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89400849-3	chr15	89400333	89401333	+	887.288879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162880, intron 1 of 2)	MTE-int|LTR|ERVL-MaLR	9430.0	NM_001162882	75459.0	Mm.45462	NM_001162880	ENSMUSG00000078938	Syce3	1700007E06Rik|TSEG-2|TSEG2	synaptonemal complex central element protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51226797-4	chr3	51226208	51227208	+	887.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009834, intron 1 of 2)	intron (NM_009834, intron 1 of 2)	2261.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152764194-2	chr2	152763714	152764714	+	887.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_053091, intron 4 of 4)	MIRb|SINE|MIR	10041.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53470433-2	chr11	53469995	53470995	+	887.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9700.0	NM_183173	237761.0	Mm.145208	NM_183173	ENSMUSG00000044352	Sowaha	A830006N08Rik|Ankrd43	sosondowah ankyrin repeat domain family member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65868696-2	chr5	65868196	65869196	+	887.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	5127.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19169080-2	chr10	19168583	19169583	+	887.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_038022, intron 1 of 1)	intron (NR_038022, intron 1 of 1)	1845.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102655564-4	chr4	102655051	102656051	+	887.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65708.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	3.0	6.0	9.0	22.0	22.5	33.5
Merged-chr2-43902810-4	chr2	43902312	43903312	+	887.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 6 of 14)	intron (NM_001301831, intron 6 of 14)	153988.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-43574207-4	chr16	43573702	43574702	+	887.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285805, intron 7 of 10)	intron (NM_001285805, intron 7 of 10)	-66453.0	NR_030576	100124467.0		NR_030576	ENSMUSG00000076372	Mir568	Mirn568|mmu-mir-568	microRNA 568	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3376199-4	chr19	3375732	3376732	+	887.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 13 of 18)	Lx8|LINE|L1	-12625.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13152458-2	chr8	13151958	13152958	+	887.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6703.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-119878702-2	chr7	119878203	119879203	+	887.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163703, intron 1 of 2)	(A)n|Simple_repeat|Simple_repeat	16755.0	NM_173408	233805.0	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	3.5	0.0	0.5	0.0	7.0	0.0
Merged-chr13-102240218-4	chr13	102239692	102240692	+	887.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-453355.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	5.5	12.5	12.0	7.5	17.0	6.0
Merged-chr14-30458355-2	chr14	30457888	30458888	+	887.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_131095, intron 1 of 3)	L2a|LINE|L2	352.0	NR_131095	77710.0	Mm.410773	NR_131095		4831407H17Rik	-	RIKEN cDNA 4831407H17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121057006-4	chr11	121056447	121057447	+	887.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026907, intron 2 of 4)	MT2A|LTR|ERVL	6622.0	NM_026907	58210.0	Mm.116986	NM_026907	ENSMUSG00000039364	Sectm1b	1810003C24Rik|K12|Sectm1	secreted and transmembrane 1B	protein-coding	0.0	0.0	0.5	0.0	0.0	1.0
Merged-chr15-103241692-2	chr15	103241192	103242192	+	887.2000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039129, intron 3 of 10)	B1_Mus2|SINE|Alu	1238.0	NR_002883	434858.0	Mm.391346	NR_002883		Gm5643	EG434858	heterogeneous nuclear ribonucleoprotein A1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18688974-4	chr2	18688511	18689511	+	887.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-10011.0	NM_001001334	381350.0	Mm.330024	NM_001001334	ENSMUSG00000037708	Spag6	Spag6l	sperm associated antigen 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111100272-4	chr10	111099772	111100772	+	887.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64530.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99218465-9	chr5	99218001	99219001	+	887.1851810000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145839, exon 14 of 14)	3' UTR (NM_145839, exon 14 of 14)	34426.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3127685-6	chr11	3127250	3128250	+	887.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003517, intron 3 of 6)	intron (NR_003517, intron 3 of 6)	3729.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-15914449-3	chr16	15913926	15914926	+	887.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 11 of 18)	intron (NM_001355731, intron 11 of 18)	27140.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24950473-4	chr7	24949987	24950987	+	887.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19588.0	NR_106013	102465633.0		NR_106013	ENSMUSG00000098802	Mir7046	Gm27469|mmu-mir-7046	microRNA 7046	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20644053-3	chr9	20643550	20644550	+	887.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310746)	promoter-TSS (NM_001310746)	714.0	NM_025401	66177.0	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-85670497-3	chr15	85669926	85670926	+	887.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-33347.0	NR_110483	102800312.0	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	11.0	12.5	15.0	19.5	18.0	14.0
Merged-chr8-117263566-2	chr8	117263066	117264066	+	887.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	6547.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27673737-5	chr7	27673247	27674247	+	887.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198417)	promoter-TSS (NM_198417)	834.0	NM_001290528	269881.0	Mm.389883	NM_001081292	ENSMUSG00000040390	Map3k10	BC028668|BC046514|MST|Mlk2	mitogen-activated protein kinase kinase kinase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16491918-3	chr7	16491412	16492412	+	887.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15132.0	NM_008718	18142.0	Mm.145821	NM_008718	ENSMUSG00000001988	Npas1	MOP5|bHLHe11	neuronal PAS domain protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-43483744-2	chr15	43483244	43484244	+	887.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_025736, intron 1 of 10)	L1_Mus2|LINE|L1	6515.0	NM_025736	66736.0	Mm.244512	NM_025736	ENSMUSG00000022337	Emc2	4921531G14Rik|AV060620|AW209495|Ttc35	ER membrane protein complex subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136199674-2	chr5	136199174	136200174	+	887.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025774)	promoter-TSS (NM_025774)	-720.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34407722-4	chr7	34407261	34408261	+	887.162476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18056.0	NM_025948	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-75445939-4	chr1	75445425	75446425	+	887.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4585.0	NM_183022	241118.0	Mm.110790	NM_183022	ENSMUSG00000033007	Asic4	Accn4|BNAC4	acid-sensing (proton-gated) ion channel family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33932383-2	chr17	33931856	33932856	+	887.125	f1_balb.idr|f1_c57bl6.idr	exon (NM_009059, exon 5 of 18)	exon (NM_009059, exon 5 of 18)	2462.0	NM_009059	19732.0	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	17.0	3.0	1.5	7.5	1.5	4.5
Merged-chr15-4043279-4	chr15	4042780	4043780	+	887.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024188, intron 3 of 16)	intron (NM_024188, intron 3 of 16)	-15874.0	NR_028266	414066.0	Mm.394461	NR_028266		BC037032	-	cDNA Sequence BC037032	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-100850792-4	chr6	100850288	100851288	+	887.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182939, intron 2 of 8)	ORR1C1|LTR|ERVL-MaLR	17150.0	NM_182939	232314.0	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding	4.5	16.0	6.5	1.5	0.0	3.5
Merged-chr3-34033986-4	chr3	34033481	34034481	+	887.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113189, intron 1 of 16)	intron (NM_001113189, intron 1 of 16)	13902.0	NM_001113189	14359.0	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39384256-3	chr6	39383746	39384746	+	887.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011226, intron 2 of 3)	intron (NM_011226, intron 2 of 3)	2893.0	NM_011226	19331.0	Mm.123866	NM_011226	ENSMUSG00000029923	Rab19	-	RAB19, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31506929-3	chr16	31506427	31507427	+	887.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77151.0	NR_152205	100047123.0	Mm.466711	NR_152205		Gm15743	-	predicted gene 15743	ncRNA	3.5	20.5	5.5	7.0	18.0	6.0
Merged-chr12-72490219-4	chr12	72489715	72490715	+	887.1083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030070, intron 23 of 24)	RLTR19|LTR|ERVK	-46142.0	NM_026327	67708.0	Mm.11233	NM_026327	ENSMUSG00000034501	Pcnx4	1810048J11Rik|4932413O10|AU017192|Pcnxl4	pecanex homolog 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102338015-4	chr7	102337507	102338507	+	887.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009287, intron 1 of 11)	intron (NM_009287, intron 1 of 11)	70183.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79678814-2	chr3	79678314	79679314	+	887.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_212452, intron 4 of 17)	intron (NM_212452, intron 4 of 17)	49735.0	NM_029482	75939.0	Mm.221520	NM_029482	ENSMUSG00000027811	4930579G24Rik	-	RIKEN cDNA 4930579G24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71285433-2	chr17	71284932	71285932	+	887.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	25579.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	1.5	10.0	7.0	5.5	13.5	9.0
Merged-chr14-73390403-4	chr14	73389905	73390905	+	887.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-5116.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25316195-4	chr12	25315767	25316767	+	887.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	187093.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	11.5	7.5	11.5	9.0	7.5	5.5
Merged-chr2-156547592-4	chr2	156547038	156548038	+	887.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164818)	promoter-TSS (NM_001164818)	-38.0	NM_026661	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	2.0	16.5	9.5	2.5	7.0	17.5
Merged-chr5-103819853-4	chr5	103819356	103820356	+	887.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133919, intron 7 of 19)	intron (NM_133919, intron 7 of 19)	65283.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81074859-4	chr7	81074357	81075357	+	887.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054085, intron 3 of 13)	intron (NM_054085, intron 3 of 13)	17257.0	NM_054085	116904.0	Mm.475768	NM_054085	ENSMUSG00000038763	Alpk3	AW319487|D330016D04|MAK|Midori|mKIAA1330	alpha-kinase 3	protein-coding	6.5	8.5	1.0	2.5	2.0	0.0
Merged-chr12-21347074-3	chr12	21346519	21347519	+	887.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277266, intron 6 of 19)	intron (NM_001277266, intron 6 of 19)	26613.0	NR_102380	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	13.0	28.0	13.5	18.5	38.5	35.5
Merged-chr2-103968486-3	chr2	103967989	103968989	+	887.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142337, intron 1 of 3)	ID_B1|SINE|B4	-1068.0	NM_001142336	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16782627-4	chr7	16782124	16783124	+	887.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009201, intron 1 of 8)	intron (NM_009201, intron 1 of 8)	1278.0	NM_009201	20514.0	Mm.1056	NM_009201	ENSMUSG00000001918	Slc1a5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC|Slc1a7	solute carrier family 1 (neutral amino acid transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-31701394-4	chr18	31700884	31701884	+	887.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172965, intron 16 of 20)	RMER3D-int|LTR|ERVK	-58440.0	NM_153515	225339.0	Mm.290804	NM_153515	ENSMUSG00000041915	Ammecr1l	5430429D03Rik|AU022236|AU040755|AW111353|E230022H04Rik	AMME chromosomal region gene 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62005709-4	chr11	62005214	62006214	+	887.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310526, intron 1 of 7)	intron (NM_001310526, intron 1 of 7)	48951.0	NM_001310526	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25074509-3	chr2	25074017	25075017	+	887.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5806.0	NM_028093	72090.0	Mm.33403	NM_028093	ENSMUSG00000036813	Entpd8	-	ectonucleoside triphosphate diphosphohydrolase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131545555-4	chr2	131545032	131546032	+	887.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013460, exon 2 of 2)	3' UTR (NM_013460, exon 2 of 2)	16753.0	NM_013460	11550.0	Mm.389380	NM_013460	ENSMUSG00000027335	Adra1d	Adra-1|Adra1|Adra1a|Gpcr8|Spr8|[a]1d|alpha1D-AR	adrenergic receptor, alpha 1d	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-70199980-4	chr10	70199482	70200482	+	887.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-4682.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52762719-4	chr2	52762255	52763255	+	887.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20606.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85527367-2	chr12	85526867	85527867	+	887.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	53477.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173218558-4	chr2	173218058	173219058	+	887.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139519, intron 1 of 3)	intron (NM_001139519, intron 1 of 3)	364.0	NM_021394	58203.0	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134292336-1	chr4	134291836	134292836	+	887.0	f1_c57bl6.idr	Intergenic	Intergenic	-4490.0	NM_146156	230809.0	Mm.22778	NM_146156	ENSMUSG00000050890	Pdik1l	BC027088|stk35l2	PDLIM1 interacting kinase 1 like	protein-coding	0.0	20.5	13.5	2.0	2.0	0.0
Merged-chr19-57393576-4	chr19	57393074	57394074	+	887.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	32565.0	NM_145505	226252.0	Mm.358870	NM_145505	ENSMUSG00000033478	Fam160b1	AI450540|mKIAA1600	family with sequence similarity 160, member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74806755-2	chr1	74806255	74807255	+	887.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14736.0	NM_009518	22409.0	Mm.5130	NM_009518	ENSMUSG00000026167	Wnt10a	-	wingless-type MMTV integration site family, member 10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35379718-2	chr7	35379218	35380218	+	887.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027897, intron 10 of 14)	(CGGGG)n|Simple_repeat|Simple_repeat	17049.0	NM_178643	101831.0	Mm.389855	NM_178643	ENSMUSG00000030493	Faap24	AW124591|AW538696|C230052I12Rik	Fanconi anemia core complex associated protein 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88706849-2	chr4	88706349	88707349	+	887.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15581.0	NM_008336	15974.0	Mm.377093	NM_008336	ENSMUSG00000100079	Ifnab	-	interferon alpha B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83862369-4	chr17	83861869	83862869	+	887.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7951.0	NR_155491	320021.0	Mm.379475	NR_155490		C430042M11Rik	-	RIKEN cDNA C430042M11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182342805-2	chr1	182342305	182343305	+	887.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC4|LINE|L1	-1199.0	NM_175127	67948.0	Mm.30737	NM_175127	ENSMUSG00000047539	Fbxo28	4833428J17Rik|5730505P19Rik|D1Ertd578e|Fbx28|mKIAA0483	F-box protein 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59588905-2	chr10	59588405	59589405	+	887.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033259, intron 1 of 7)	intron (NM_001033259, intron 1 of 7)	27787.0	NM_001033259	215999.0	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7554541-4	chr9	7554044	7555044	+	887.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-3885.0	NM_008611	17394.0	Mm.16415	NM_008611	ENSMUSG00000005800	Mmp8	BB138268	matrix metallopeptidase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64934441-3	chr5	64933949	64934949	+	887.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276445)	promoter-TSS (NM_001276445)	-891.0	NM_001276445	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165609784-3	chr1	165609307	165610307	+	887.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	B1_Mm|SINE|Alu	24734.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-3920996-4	chr16	3920505	3921505	+	887.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029738, intron 6 of 11)	intron (NM_029738, intron 6 of 11)	11996.0	NM_029738	76779.0	Mm.458921	NM_029738	ENSMUSG00000014232	Cluap1	2310030D15Rik|2610111M03Rik	clusterin associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75037195-3	chr10	75036691	75037691	+	887.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359272)	promoter-TSS (NM_001359272)	-35.0	NM_001359272	76877.0	Mm.133593	NM_029781	ENSMUSG00000020175	Rab36	6330593L16Rik|AW047545	RAB36, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34199630-4	chr13	34199157	34200157	+	887.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 5 of 10)	intron (NM_001033167, intron 5 of 10)	36693.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	9.0	20.0	16.0	0.0	2.5	0.0
Merged-chr2-144274956-1	chr2	144274456	144275456	+	887.0	f0_balb.idr	intron (NM_001355688, intron 2 of 4)	intron (NM_001355688, intron 2 of 4)	4052.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79667036-2	chr10	79666536	79667536	+	887.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013591, intron 4 of 4)	ID_B1|SINE|B4	-2374.0	NM_148934	110012.0	Mm.22623	NM_148934	ENSMUSG00000020308	Tpgs1	AV005629|Gm16517|Gtrgeo22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-53082088-1	chr14	53081588	53082588	+	887.0	f0_c57.idr	Intergenic	Intergenic	-42622.0	NR_155501	102632039.0	Mm.410779	NR_155501		Gm30214	-	predicted gene, 30214	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-98003363-2	chr6	98002819	98003819	+	887.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001178049, intron 5 of 9)	intron (NM_001178049, intron 5 of 9)	11536.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	7.5	1.5	4.5	9.5	0.5	1.0
Merged-chr7-111081249-2	chr7	111080749	111081749	+	887.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013507, intron 2 of 21)	intron (NM_013507, intron 2 of 21)	1781.0	NM_001040131	13690.0	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32308435-2	chr2	32307935	32308935	+	887.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_125959)	TTS (NR_125959)	-9830.0	NR_128563	104795665.0		NR_128563	ENSMUSG00000092765	Gm23363	Mir3154|mir-3154|mmu-mir-3154	predicted gene, 23363	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29820482-6	chr2	29819975	29820975	+	887.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6914.0	NM_026615	68205.0	Mm.20273	NM_026615	ENSMUSG00000069020	Urm1	2900073H19Rik	ubiquitin related modifier 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125141862-1	chr6	125141362	125142362	+	887.0	f1_c57bl6.idr	intron (NM_138747, intron 15 of 15)	RSINE1|SINE|B4	-3362.0	NR_126495	320678.0	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	0.0	0.0	0.0	0.5	0.5	0.0
Merged-chr11-76474661-4	chr11	76474152	76475152	+	887.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 3 of 21)	PB1|SINE|Alu	-6187.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	29.0	34.5	26.0	40.5	45.0	29.5
Merged-chr9-90207437-2	chr9	90206937	90207937	+	887.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 12 of 12)	intron (NM_194334, intron 12 of 12)	44459.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106886220-4	chr9	106885682	106886682	+	887.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175402, exon 1 of 1)	exon (NM_175402, exon 1 of 1)	818.0	NM_175402	109095.0	Mm.431589	NM_175402	ENSMUSG00000074102	Rbm15b	1810017N16Rik	RNA binding motif protein 15B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97438068-2	chr11	97437568	97438568	+	887.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12092.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64204188-4	chr5	64203751	64204751	+	887.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-26106.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5044597-3	chr6	5044101	5045101	+	887.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	141281.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94007378-4	chr16	94006857	94007857	+	887.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019500, intron 1 of 2)	intron (NM_019500, intron 1 of 2)	1480.0	NM_019500	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-106993651-2	chr14	106993151	106994151	+	887.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-507131.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-63484923-4	chr18	63484418	63485418	+	887.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97735.0	NM_001039485	667742.0	Mm.158720	NM_172629	ENSMUSG00000041482	Piezo2	5930434P17|9030411M15Rik|9430028L06Rik|Fam38b|Fam38b2	piezo-type mechanosensitive ion channel component 2	protein-coding	2.5	0.0	3.5	2.5	0.0	3.0
Merged-chr9-119997900-1	chr9	119997400	119998400	+	887.0	f1_balb.idr	Intergenic	B3|SINE|B2	-13158.0	NM_153287	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr3-22126568-4	chr3	22126055	22127055	+	887.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	49903.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163945830-1	chr2	163945330	163946330	+	887.0	f1_c57bl6.idr	Intergenic	MT2B2|LTR|ERVL	-27147.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	0.0	0.0	0.5	0.0	0.0	1.0
Merged-chr16-4584110-2	chr16	4583610	4584610	+	887.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-10603.0	NM_031184	83396.0	Mm.134072	NM_031184	ENSMUSG00000014303	Glis2	Gli5|Klf16|Nkl	GLIS family zinc finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45731261-3	chr7	45730762	45731762	+	887.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_017465, exon 6 of 7)	exon (NM_017465, exon 6 of 7)	-5446.0	NM_027055	69363.0	Mm.45607	NM_027055	ENSMUSG00000070563	Spaca4	1700008E09Rik|AV043694|Samp14	sperm acrosome associated 4	protein-coding	0.0	0.5	0.0	1.0	0.0	0.0
Merged-chr8-122562297-2	chr8	122561797	122562797	+	887.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5718.0	NM_026014	67177.0	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	5.0	5.0	6.0	2.5	18.0	2.5
Merged-chr5-122768127-2	chr5	122767627	122768627	+	887.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199676, intron 1 of 16)	intron (NM_001199676, intron 1 of 16)	11283.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-13267638-4	chr1	13267065	13268065	+	887.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 2 of 22)	(CCG)n|Simple_repeat|Simple_repeat	104864.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	14.0	20.5	13.0	16.5	10.5	18.5
Merged-chr11-117773487-2	chr11	117772987	117773987	+	887.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_154387, exon 9 of 19)	non-coding (NR_154387, exon 9 of 19)	6161.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-193799261-3	chr1	193798731	193799731	+	887.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-291701.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155033584-3	chr2	155033029	155034029	+	887.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015770, intron 1 of 3)	intron (NM_015770, intron 1 of 3)	19959.0	NM_015770	50518.0	Mm.315593	NM_015770	ENSMUSG00000027596	a	A<y>|ASIP|ASP|As	nonagouti	protein-coding	4.0	0.0	3.0	1.5	10.5	5.0
Merged-chr6-116004199-3	chr6	116003695	116004695	+	887.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9190.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43870595-9	chr5	43870022	43871022	+	886.992615	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	RSINE1|SINE|B4	1713.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	174.0	519.0	289.5	121.0	353.0	176.0
Merged-chr3-88245933-4	chr3	88245442	88246442	+	886.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021375, exon 5 of 10)	exon (NM_021375, exon 5 of 10)	8742.0	NM_021375	58176.0	Mm.103777	NM_021375	ENSMUSG00000104445	Rhbg	-	Rhesus blood group-associated B glycoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64100666-4	chr9	64100166	64101166	+	886.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16481.0	NM_145835	235435.0	Mm.436581	NM_145835	ENSMUSG00000032401	Lctl	E130104I05Rik|KLPH	lactase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-186202734-3	chr1	186202212	186203212	+	886.9722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85402.0	NM_146106	226791.0	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-75317346-4	chr4	75316845	75317845	+	886.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-39053.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118534119-4	chr2	118533600	118534600	+	886.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331221, intron 3 of 3)	intron (NM_001331221, intron 3 of 3)	10487.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	2.0	4.0	4.5	12.0	1.5	6.5
Merged-chr11-116732759-4	chr11	116732217	116733217	+	886.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19450.0	NR_003364	193217.0	Mm.100084	NR_003364		BC018473	-	cDNA sequence BC018473	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86772204-4	chr12	86771688	86772688	+	886.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37819.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120608014-4	chr8	120607486	120608486	+	886.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_197988)	TTS (NM_197988)	-18911.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123939947-3	chr4	123939422	123940422	+	886.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22489.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	5.5	1.5	0.5	0.0	0.0	5.5
Merged-chr6-24956164-6	chr6	24955689	24956689	+	886.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177013)	promoter-TSS (NM_177013)	-64.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80748841-4	chr10	80748355	80749355	+	886.912476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6348.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20829615-2	chr16	20829115	20830115	+	886.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95104.0	NM_009379	21832.0	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127564192-3	chr10	127563712	127564712	+	886.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 41 of 88)	B1_Mus2|SINE|Alu	-29653.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.5	12.5	2.5	3.0	2.5	0.5
Merged-chr16-36061368-3	chr16	36060876	36061876	+	886.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027342, intron 1 of 4)	intron (NM_027342, intron 1 of 4)	10139.0	NM_027342	70186.0	Mm.212991	NM_027342	ENSMUSG00000003955	Fam162a	2310056P07Rik|HGTD-P	family with sequence similarity 162, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-144204909-3	chr1	144204416	144205416	+	886.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27544.0	NM_153171	246709.0	Mm.38271	NM_153171	ENSMUSG00000051079	Rgs13	-	regulator of G-protein signaling 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61911762-3	chr18	61911284	61912284	+	886.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360868)	promoter-TSS (NM_001360868)	40.0	NM_198649	319713.0	Mm.329478	NM_198649	ENSMUSG00000032735	Ablim3	AW990719|D930036B08Rik	actin binding LIM protein family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-29734488-3	chr16	29733991	29734991	+	886.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	155157.0	NM_001199177	74143.0	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	1.5	1.0	0.5	0.0	1.0	0.0
Merged-chr11-22710880-4	chr11	22710380	22711380	+	886.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C-int|LTR|ERVK	148855.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36692647-4	chr16	36692127	36693127	+	886.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1351.0	NM_001285788	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100568259-4	chr12	100567762	100568762	+	886.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153587, intron 14 of 17)	intron (NM_153587, intron 14 of 17)	-47440.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101239539-4	chr5	101239052	101240052	+	886.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	393323.0	NM_172715	231510.0	Mm.271911	NM_172715	ENSMUSG00000029314	Gpat3	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|Agpat9|GPAT-3|mGPAT3	glycerol-3-phosphate acyltransferase 3	protein-coding	28.0	55.5	20.5	0.0	24.5	22.0
Merged-chr11-9531052-4	chr11	9530555	9531555	+	886.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 45 of 61)	intron (NM_178259, intron 45 of 61)	339113.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118455716-5	chr11	118455259	118456259	+	886.8599849999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045902)	promoter-TSS (NR_045902)	-764.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-26666554-4	chr19	26666071	26667071	+	886.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011416, intron 10 of 32)	intron (NM_011416, intron 10 of 32)	61411.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	4.0	7.5	2.5	5.0	4.5	2.0
Merged-chr19-46303300-2	chr19	46302800	46303800	+	886.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NR_152247)	TTS (NR_152247)	-1437.0	NM_001177369	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77926310-2	chr10	77925810	77926810	+	886.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 21 of 33)	B3A|SINE|B2	-23774.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70686682-2	chr11	70686182	70687182	+	886.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190379, intron 1 of 20)	intron (NM_001190379, intron 1 of 20)	1423.0	NM_001190376	216874.0	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140828785-3	chr5	140828274	140829274	+	886.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 1 of 3)	intron (NM_010302, intron 1 of 3)	1657.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113638161-3	chr5	113637663	113638663	+	886.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	MIR|SINE|MIR	5440.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87045643-4	chr11	87045141	87046141	+	886.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025638, intron 5 of 9)	intron (NM_025638, intron 5 of 9)	28496.0	NM_025638	66569.0	Mm.281887	NM_025638	ENSMUSG00000061666	Gdpd1	2610020H15Rik	glycerophosphodiester phosphodiesterase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29620137-4	chr2	29619618	29620618	+	886.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	CpG	398.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79346690-3	chr15	79346219	79347219	+	886.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304830)	promoter-TSS (NM_001304830)	98.0	NM_001304830	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65577051-3	chr5	65576564	65577564	+	886.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016786, intron 3 of 6)	B1_Mur4|SINE|Alu	39819.0	NM_001310619	53323.0	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-37414649-4	chr3	37414148	37415148	+	886.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153561, intron 2 of 4)	intron (NM_153561, intron 2 of 4)	4948.0	NM_001291044	229228.0	Mm.436967	NM_153561	ENSMUSG00000050174	Nudt6	Asfgf2b	nudix (nucleoside diphosphate linked moiety X)-type motif 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-15494065-6	chr9	15493568	15494568	+	886.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359604, intron 1 of 2)	CpG	636.0	NM_001359604	170748.0	Mm.86572	NM_133214	ENSMUSG00000058173	Smco4	Fn5	single-pass membrane protein with coiled-coil domains 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54995360-3	chr11	54994879	54995879	+	886.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 14 of 24)	MIR3|SINE|MIR	-32439.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-140845133-4	chr7	140844662	140845662	+	886.8273929999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001099742)	promoter-TSS (NM_001099742)	-403.0	NM_001099742	338417.0	Mm.270960	NM_001099742	ENSMUSG00000038801	Scgb1c1	Ryd5	secretoglobin, family 1C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-29946145-4	chr16	29945619	29946619	+	886.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	33005.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-43335712-3	chr16	43335214	43336214	+	886.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	84482.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-62750573-3	chr5	62750071	62751071	+	886.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 1 of 32)	MTA_Mm|LTR|ERVL-MaLR	15606.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	1.0	7.0	0.5	1.0	7.0	0.5
Merged-chr3-36816817-3	chr3	36816315	36817315	+	886.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46291.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-74004393-4	chr13	74003903	74004903	+	886.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	-5016.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9178552-2	chr13	9178064	9179064	+	886.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84683.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91826933-2	chr16	91826433	91827433	+	886.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 14 of 15)	intron (NM_001110276, intron 14 of 15)	97562.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117724469-3	chr10	117723984	117724984	+	886.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-13726.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27453837-6	chr3	27453380	27454380	+	886.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 22 of 26)	B3|SINE|B2	82529.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118758706-2	chr9	118758161	118759161	+	886.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	MLT1E1|LTR|ERVL-MaLR	46969.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102310207-2	chr11	102309707	102310707	+	886.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001302954, exon 9 of 20)	exon (NM_001302954, exon 9 of 20)	7080.0	NM_001044383	21429.0	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-89221015-4	chr9	89220519	89221519	+	886.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359993, intron 2 of 2)	intron (NM_001359993, intron 2 of 2)	9635.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191138557-4	chr1	191138030	191139030	+	886.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26287.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152261502-4	chr3	152261014	152262014	+	886.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199465, intron 1 of 12)	intron (NM_199465, intron 1 of 12)	4281.0	NM_001357206	68810.0	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42633394-2	chr10	42632894	42633894	+	886.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45522.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105974201-2	chr1	105973676	105974676	+	886.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	16106.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	12.5	4.0	10.5	6.0	2.0	0.5
Merged-chr1-85896278-2	chr1	85895778	85896778	+	886.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_022417, intron 1 of 5)	intron (NM_022417, intron 1 of 5)	1768.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93366274-3	chr10	93365710	93366710	+	886.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29999.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	5.0	5.5	6.0	78.5	187.0	72.0
Merged-chr14-31413397-4	chr14	31412891	31413891	+	886.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	4286.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150915355-4	chr2	150914904	150915904	+	886.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027014, intron 2 of 6)	intron (NM_027014, intron 2 of 6)	5810.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7888595-4	chr10	7888227	7889227	+	886.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52346.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-67374097-4	chr3	67373603	67374603	+	886.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039543)	promoter-TSS (NM_001039543)	6.0	NM_010801	17349.0	Mm.10414	NM_010801	ENSMUSG00000048416	Mlf1	HLS7	myeloid leukemia factor 1	protein-coding	0.0	0.5	0.0	0.0	0.0	1.0
Merged-chr4-53794395-3	chr4	53793990	53794990	+	886.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14785.0	NM_009317	21350.0	Mm.56955	NM_009317	ENSMUSG00000028417	Tal2	bHLHa19	T cell acute lymphocytic leukemia 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-37956805-4	chr3	37956303	37957303	+	886.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040559, intron 2 of 3)	intron (NR_040559, intron 2 of 3)	57990.0	NR_040559	626410.0	Mm.389417	NR_040559	ENSMUSG00000106461	Gm20755	-	predicted gene, 20755	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97279508-5	chr6	97278975	97279975	+	886.679077	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-26695.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	5.0	24.5	17.5	10.5	20.0	15.0
Merged-chr2-103801280-3	chr2	103800778	103801778	+	886.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3638.0	NM_016739	53872.0	Mm.427589	NM_016739	ENSMUSG00000027184	Caprin1	AL022980|Caprin-1|Gpiap|Gpiap1|Mmgpip137|P137|rng105	cell cycle associated protein 1	protein-coding	0.0	2.5	0.0	0.5	0.0	1.0
Merged-chr1-16505108-4	chr1	16504600	16505600	+	886.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347044, intron 4 of 13)	RMER1C|Other|Other	14015.0	NM_001347044	29819.0	Mm.216257	NM_025303	ENSMUSG00000025920	Stau2	-	staufen double-stranded RNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81190280-4	chr10	81189780	81190780	+	886.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007828, exon 2 of 8)	exon (NM_007828, exon 2 of 8)	-4411.0	NR_015477	69678.0	Mm.81562	NR_015477		Atcayos	2310050B05Rik	ataxia, cerebellar, Cayman type, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58296516-3	chr1	58296020	58297020	+	886.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008419, intron 10 of 35)	intron (NM_001008419, intron 10 of 35)	18194.0	NM_001008419	213043.0	Mm.414292	NM_001008419	ENSMUSG00000079554	Aox2	Aoh3|Aox3l1	aldehyde oxidase 2	protein-coding	0.0	0.0	1.5	3.0	0.0	0.0
Merged-chr12-111958294-3	chr12	111957748	111958748	+	886.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8761.0	NM_027360	70257.0	Mm.318	NM_027360	ENSMUSG00000021290	2010107E04Rik	9430003J03Rik|AU043134|AV124504|Mp68	RIKEN cDNA 2010107E04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-65143623-3	chr6	65143125	65144125	+	886.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019455, intron 1 of 5)	intron (NM_019455, intron 1 of 5)	1105.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-44985204-3	chr2	44984684	44985684	+	886.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001355289, exon 11 of 11)	3' UTR (NM_001355289, exon 11 of 11)	37993.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83169876-3	chr15	83169388	83170388	+	886.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029787, intron 1 of 8)	intron (NM_029787, intron 1 of 8)	2320.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4889705-3	chr2	4889211	4890211	+	886.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175400, intron 3 of 8)	intron (NM_175400, intron 3 of 8)	8147.0	NM_175400	109079.0	Mm.34329	NM_175400	ENSMUSG00000026662	Sephs1	1110046B24Rik|AA589574|AI505014|AW111620|SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118400166-3	chr11	118399676	118400676	+	886.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011150, intron 1 of 5)	intron (NM_011150, intron 1 of 5)	1783.0	NM_011150	19039.0	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135895455-2	chr4	135894955	135895955	+	886.6666869999999	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009924, exon 1 of 2)	5' UTR (NM_009924, exon 1 of 2)	266.0	NM_009924	12802.0	Mm.297251	NM_009924	ENSMUSG00000062585	Cnr2	CB-2|CB2|CB2-R	cannabinoid receptor 2 (macrophage)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123374888-3	chr8	123374379	123375379	+	886.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359076, intron 1 of 16)	intron (NM_001359076, intron 1 of 16)	1168.0	NM_001286363	66855.0	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-86141772-3	chr3	86141299	86142299	+	886.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016959, exon 2 of 6)	exon (NM_016959, exon 2 of 6)	869.0	NM_016959	20091.0	Mm.391785	NM_016959	ENSMUSG00000028081	Rps3a1	Rps3a	ribosomal protein S3A1	protein-coding	33.5	176.0	96.5	39.0	99.0	126.5
Merged-chr16-92783818-1	chr16	92783318	92784318	+	886.6666869999999	f0_balb.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	42256.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91731269-4	chr16	91730768	91731768	+	886.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	1897.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-105224164-3	chr13	105223689	105224689	+	886.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360891, intron 5 of 7)	intron (NM_001360891, intron 5 of 7)	68825.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	3.0	6.0	7.5	0.0	6.5	2.0
Merged-chr13-109213119-3	chr13	109212694	109213694	+	886.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-111550.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-41741776-3	chr3	41741275	41742275	+	886.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291048)	promoter-TSS (NM_001291048)	739.0	NR_155540	67161.0	Mm.331001	NM_001081411	ENSMUSG00000059834	Sclt1	2610207F23Rik|4931421F20Rik|CAGGS-SB10|Tg(ACTB-sb10)1Dla|Tg(CAG-sb10)1Dla	sodium channel and clathrin linker 1	protein-coding	60.0	111.0	87.0	53.5	99.0	78.5
Merged-chr11-76622284-3	chr11	76621782	76622782	+	886.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-44543.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102013048-2	chr7	102012548	102013548	+	886.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133947, intron 21 of 24)	intron (NM_133947, intron 21 of 24)	5107.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132491451-2	chr4	132490951	132491951	+	886.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19005.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30114637-2	chr5	30114137	30115137	+	886.625	f1_balb.idr|f1_c57bl6.idr	exon (NM_001167879, exon 4 of 6)	exon (NM_001167879, exon 4 of 6)	-8551.0	NM_001256263	433868.0	Mm.450696	NM_001256263	ENSMUSG00000086815	3110082J24Rik	-	RIKEN cDNA 3110082J24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6192197-4	chr4	6191698	6192698	+	886.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026534, intron 1 of 7)	MTC|LTR|ERVL-MaLR	1093.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150220814-4	chr4	150220312	150221312	+	886.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16385.0	NM_023119	13806.0	Mm.70666	NM_023119	ENSMUSG00000063524	Eno1	0610008I15|AL022784|Eno-1|MBP-1	enolase 1, alpha non-neuron	protein-coding	5.0	2.5	3.0	0.0	2.5	0.0
Merged-chr16-31209980-4	chr16	31209431	31210431	+	886.622192	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8693.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	0.0	0.0	3.0	0.0	0.5	0.0
Merged-chr10-60269816-4	chr10	60269332	60270332	+	886.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7796.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61130457-3	chr18	61129917	61130917	+	886.611084	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178277)	TTS (NM_178277)	12949.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	6.0	7.5	6.0	4.5	8.5	3.5
Merged-chr5-99246354-3	chr5	99245940	99246940	+	886.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 1 of 13)	RLTR20C2_MM|LTR|ERVK	6487.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25271357-2	chr7	25270857	25271857	+	886.599976	f1_balb.idr|f1_c57bl6.idr	exon (NM_001302811, exon 2 of 21)	exon (NM_001302811, exon 2 of 21)	3658.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90905834-4	chr5	90905432	90906432	+	886.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009140)	TTS (NM_009140)	2033.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	1.0	9.5	0.0	1.0	5.0	1.0
Merged-chr8-123361470-4	chr8	123360960	123361960	+	886.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172287, intron 10 of 14)	intron (NM_172287, intron 10 of 14)	-12251.0	NM_001359076	66855.0	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-79671393-4	chr1	79670921	79671921	+	886.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183027, intron 1 of 4)	intron (NM_183027, intron 1 of 4)	551.0	NM_183027	252903.0	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	0.0	0.0	3.0	0.0	4.5	2.5
Merged-chr2-93162156-4	chr2	93161668	93162668	+	886.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-25380.0	NM_001356536	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66293749-3	chr5	66293245	66294245	+	886.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302833, intron 10 of 12)	intron (NM_001302833, intron 10 of 12)	32904.0	NM_027602	70918.0	Mm.23166	NM_027602	ENSMUSG00000029206	Nsun7	4921525L17Rik	NOL1/NOP2/Sun domain family, member 7	protein-coding	5.0	4.5	0.5	0.0	3.5	4.0
Merged-chr6-92481306-3	chr6	92480803	92481803	+	886.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134460)	promoter-TSS (NM_001134460)	89.0	NM_001134460	243548.0	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-15575839-3	chr3	15575344	15576344	+	886.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001173460)	promoter-TSS (NM_001173460)	-779.0	NM_001173460	668101.0	Mm.423523	NM_001173460	ENSMUSG00000095028	Sirpb1b	-	signal-regulatory protein beta 1B	protein-coding	24.0	90.0	77.5	29.0	63.0	62.5
Merged-chr12-113218089-4	chr12	113217584	113218584	+	886.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32181.0	NM_153776	69195.0	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	5.0	10.0	2.0	0.0	0.0	3.5
Merged-chr5-3497863-4	chr5	3497337	3498337	+	886.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-45996.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88831674-4	chr6	88831186	88832186	+	886.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10249.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-84594603-4	chr7	84594125	84595125	+	886.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010176, intron 9 of 13)	intron (NM_010176, intron 9 of 13)	11317.0	NM_010176	14085.0	Mm.3798	NM_010176	ENSMUSG00000030630	Fah	swst	fumarylacetoacetate hydrolase	protein-coding	4.5	0.0	1.0	0.0	0.0	0.5
Merged-chr10-31557463-3	chr10	31557005	31558005	+	886.5238039999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146349, intron 1 of 5)	intron (NM_001146349, intron 1 of 5)	52220.0	NM_001146349	268291.0	Mm.295212	NM_001146349	ENSMUSG00000063760	Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153484761-2	chr2	153484261	153485261	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134300, intron 1 of 10)	intron (NM_001134300, intron 1 of 10)	-40282.0	NM_001001986	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61113413-4	chr18	61112948	61113948	+	886.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 6 of 21)	intron (NM_001037859, intron 6 of 21)	-4020.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	9.5	8.0	14.5	21.0	21.5	7.5
Merged-chr8-94228051-4	chr8	94227588	94228588	+	886.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172410, intron 3 of 22)	intron (NM_172410, intron 3 of 22)	13524.0	NM_172410	71805.0	Mm.458170	NM_172410	ENSMUSG00000032939	Nup93	2410008G02Rik	nucleoporin 93	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88459833-2	chr15	88459333	88460333	+	886.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-140469.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101066709-4	chr7	101066206	101067206	+	886.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42069.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	9.5	10.0	3.0	0.0	0.0	0.0
Merged-chr18-6515429-2	chr18	6514933	6515933	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007935, intron 1 of 13)	intron (NM_007935, intron 1 of 13)	675.0	NM_007935	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	20.0	60.0	50.5	21.5	51.0	28.0
Merged-chr12-3284727-3	chr12	3284231	3285231	+	886.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 1 of 5)	B3A|SINE|B2	25238.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58976644-4	chr15	58976140	58977140	+	886.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	42830.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166452725-2	chr2	166452226	166453226	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_015558, intron 1 of 2)	ORR1B2|LTR|ERVL-MaLR	5275.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79688604-2	chr15	79688104	79689104	+	886.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028792)	promoter-TSS (NM_028792)	-732.0	NM_028792	74158.0	Mm.323393	NM_028792	ENSMUSG00000022426	Josd1	1300006C06Rik|mKIAA0063	Josephin domain containing 1	protein-coding	170.0	422.5	295.0	198.5	405.0	283.0
Merged-chr9-61373049-3	chr9	61372521	61373521	+	886.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001083927, exon 1 of 20)	5' UTR (NM_001083927, exon 1 of 20)	655.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86688577-2	chr11	86688077	86689077	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175004, intron 2 of 2)	(CACTA)n|Simple_repeat|Simple_repeat	4496.0	NM_001098810	217057.0	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119558003-2	chr8	119557503	119558503	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019709, intron 1 of 23)	intron (NM_019709, intron 1 of 23)	758.0	NM_001167910	56453.0	Mm.206934	NM_019709	ENSMUSG00000031835	Mbtps1	0610038M03Rik|AV003995|S1P|SKI-1|Ski1|mKIAA0091	membrane-bound transcription factor peptidase, site 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108259571-2	chr3	108259071	108260071	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011967, intron 1 of 8)	intron (NM_011967, intron 1 of 8)	2645.0	NM_011967	26442.0	Mm.208883	NM_011967	ENSMUSG00000068749	Psma5	ZETA	proteasome (prosome, macropain) subunit, alpha type 5	protein-coding	0.0	0.5	0.0	0.0	0.5	0.0
Merged-chr9-118871295-2	chr9	118870786	118871786	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 10 of 13)	intron (NM_001113514, intron 10 of 13)	-55250.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0.5	17.0	11.0	3.0	11.0	6.5
Merged-chr5-16470505-3	chr5	16470005	16471005	+	886.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82990.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91695360-4	chr16	91694864	91695864	+	886.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026994, intron 7 of 11)	intron (NM_026994, intron 7 of 11)	6466.0	NR_040389	100038392.0	Mm.440384	NR_040389	ENSMUSG00000085169	Gm10785	-	predicted gene 10785	ncRNA	0.0	10.5	3.5	0.5	4.5	4.5
Merged-chr4-8536625-2	chr4	8536125	8537125	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021518, intron 1 of 7)	intron (NM_021518, intron 1 of 7)	981.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	54.5	137.5	145.0	91.5	176.5	145.5
Merged-chr2-153144159-2	chr2	153143659	153144659	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 10 of 12)	intron (NM_001172117, intron 10 of 12)	-17142.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9035561-2	chr3	9035061	9036061	+	886.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26403.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	23.0	17.5	18.0	2.5	7.0	2.5
Merged-chr1-178463845-4	chr1	178463309	178464309	+	886.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026626, intron 3 of 6)	ERV3-16A3_I-int|LTR|ERVL	57791.0	NM_026626	68226.0	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78158070-2	chr11	78157570	78158570	+	886.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001346762)	TTS (NM_001346762)	7480.0	NM_009423	22032.0	Mm.390418	NM_009423	ENSMUSG00000017386	Traf4	A530032M13Rik|CART1|msp2	TNF receptor associated factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78509349-2	chr11	78508849	78509849	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199199, intron 3 of 5)	B2_Mm2|SINE|B2	2819.0	NM_199199	195040.0	Mm.383431	NM_199199	ENSMUSG00000051232	Tmem199	AI316787|AI848469|R74819	transmembrane protein 199	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-5409886-4	chr5	5409403	5410403	+	886.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER45B|DNA|hAT-Tip100	-29652.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62008083-2	chr15	62007583	62008583	+	886.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22742.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118811899-2	chr9	118811399	118812399	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 4 of 13)	LTR16C|LTR|ERVL	100207.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.5	0.0	0.0	0.0	0.0	2.0
Merged-chr3-9619729-3	chr3	9619223	9620223	+	886.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9638.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	9.5	0.0	5.0	5.0	3.5	8.5
Merged-chr6-38767953-2	chr6	38767453	38768453	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 2 of 14)	intron (NM_010433, intron 2 of 14)	69358.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60779864-4	chr10	60779371	60780371	+	886.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029770, intron 3 of 16)	intron (NM_029770, intron 3 of 16)	-27089.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24803395-2	chr13	24802864	24803864	+	886.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_024473, exon 1 of 5)	5' UTR (NM_024473, exon 1 of 5)	1707.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32276454-2	chr19	32275954	32276954	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168525, intron 2 of 9)	intron (NM_001168525, intron 2 of 9)	-65441.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71441565-2	chr8	71441087	71442087	+	886.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22070.0	NM_022419	64296.0	Mm.276383	NM_022419	ENSMUSG00000007950	Abhd8	0910001L24Rik|AB030191	abhydrolase domain containing 8	protein-coding	0.5	0.0	3.5	0.0	0.0	8.0
Merged-chr6-84008593-2	chr6	84008093	84009093	+	886.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077694)	promoter-TSS (NM_001077694)	-5.0	NM_001077694	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119054739-2	chr11	119054239	119055239	+	886.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13826.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127087454-3	chr2	127086946	127087946	+	886.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026678, intron 5 of 7)	RMER6B|LTR|ERVK	16789.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	0.5	22.5	16.5	7.0	12.5	15.0
Merged-chr11-54955419-2	chr11	54954919	54955919	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271456, intron 1 of 18)	B1_Mm|SINE|Alu	7521.0	NM_021327	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-64870265-2	chr14	64869765	64870765	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 4 of 9)	Lx5c|LINE|L1	79592.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	0.0	9.0	8.0	0.0	9.0	9.0
Merged-chr6-87130265-4	chr6	87129763	87130763	+	886.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	25517.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	0.0	0.0	0.0	6.5	0.0	2.0
Merged-chr3-107233660-4	chr3	107233182	107234182	+	886.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001256174, exon 3 of 3)	exon (NM_001256174, exon 3 of 3)	3068.0	NM_001256174	319929.0	Mm.30453	NM_001256174	ENSMUSG00000094613	A630076J17Rik	-	RIKEN cDNA A630076J17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88333999-2	chr3	88333499	88334499	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024246, intron 1 of 3)	intron (NM_024246, intron 1 of 3)	434.0	NM_024246	71913.0	Mm.34256	NM_024246	ENSMUSG00000001420	Tmem79	2310042N02Rik|2310074C17Rik|Matt|ma	transmembrane protein 79	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125645020-2	chr6	125644520	125645520	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 28 of 51)	L1MA5A|LINE|L1	-45399.0	NM_153589	243634.0	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58200926-2	chr9	58200426	58201426	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161538, intron 2 of 3)	intron (NM_001161538, intron 2 of 3)	789.0	NM_001161537	320563.0	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8605985-4	chr11	8605548	8606548	+	886.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	58487.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	25.5	27.5	19.5	24.0	28.0	19.0
Merged-chr11-100339283-2	chr11	100338783	100339783	+	886.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	4876.0	NM_010257	14459.0	Mm.4767	NM_010257	ENSMUSG00000017165	Gast	GAS	gastrin	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr7-79831777-3	chr7	79831287	79832287	+	886.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008486, intron 15 of 20)	HAL1|LINE|L1	16423.0	NM_008486	16790.0	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11471524-4	chr8	11471036	11472036	+	886.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	L1M2|LINE|L1	-6393.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47580372-4	chr19	47579911	47580911	+	886.473206	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164639, intron 1 of 17)	CpG	392.0	NM_001164639	20874.0	Mm.281011	NM_009289	ENSMUSG00000025060	Slk	9A2|AV021402|AW411554|Etk4|SMAK|Stk2|mKIAA0204|mSLK	STE20-like kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-12884789-4	chr10	12884288	12885288	+	886.470825	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-23053.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.0	9.5	7.5	12.0	37.0	12.0
Merged-chr2-159811855-4	chr2	159811341	159812341	+	886.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-135500.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	0.0	4.5	3.0	12.0	2.0	4.5
Merged-chr1-161512372-4	chr1	161511877	161512877	+	886.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	17720.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	12.5	15.0	13.5	5.0	9.5	11.0
Merged-chr17-70993589-4	chr17	70993086	70994086	+	886.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357820)	TTS (NM_001357820)	-3070.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	28.5	112.0	82.0	32.5	149.5	164.0
Merged-chr14-105285403-3	chr14	105284893	105285893	+	886.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029561, intron 1 of 7)	Lx8|LINE|L1	26720.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-59163092-3	chr7	59162596	59163596	+	886.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-65654.0	NM_001033962	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	6.5	9.5	3.0	14.0	23.0	18.5
Merged-chr11-79528849-5	chr11	79528340	79529340	+	886.4400019999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033711, intron 1 of 1)	intron (NM_001033711, intron 1 of 1)	1769.0	NM_146023	101488212.0	Mm.439665	NM_146023	ENSMUSG00000070354	Evi2	Evi2a-evi2b|Gm21975	ecotropic viral integration site 2	protein-coding	158.5	375.5	171.0	145.0	362.0	186.0
Merged-chr15-83435462-3	chr15	83434968	83435968	+	886.43335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358643, intron 1 of 9)	intron (NM_001358643, intron 1 of 9)	-2618.0	NM_001159510	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-38039968-4	chr5	38039457	38040457	+	886.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359398, intron 1 of 9)	intron (NM_001359398, intron 1 of 9)	727.0	NM_026959	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	6.0	0.5	0.5	1.0	0.5	0.0
Merged-chr14-103826131-4	chr14	103825635	103826635	+	886.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276296, intron 1 of 7)	intron (NM_001276296, intron 1 of 7)	17566.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81294483-3	chr10	81293943	81294943	+	886.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	1480.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59548998-4	chr9	59548491	59549491	+	886.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	9451.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121453978-4	chr5	121453456	121454456	+	886.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029912, intron 1 of 9)	RMER10A|LTR|ERVL	1247.0	NM_029912	77462.0	Mm.358781	NM_029912	ENSMUSG00000029452	Tmem116	4930406A18Rik|4930513P12Rik|C030022K24Rik	transmembrane protein 116	protein-coding	1.0	7.0	8.0	5.0	8.5	2.5
Merged-chr2-58286949-4	chr2	58286445	58287445	+	886.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040365)	TTS (NR_040365)	10166.0	NR_040365	100502932.0	Mm.417207	NR_040365	ENSMUSG00000086995	Gm13544	-	predicted gene 13544	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70818071-4	chr17	70817572	70818572	+	886.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347414, exon 11 of 11)	exon (NM_001347414, exon 11 of 11)	28705.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98893734-4	chr10	98893284	98894284	+	886.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-20858.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36437423-3	chr1	36436912	36437912	+	886.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310517, intron 4 of 8)	intron (NM_001310517, intron 4 of 8)	7859.0	NM_001013374	214895.0	Mm.287854	NM_001013374	ENSMUSG00000001143	Lman2l	A630028F14Rik|VIP36-like|VIPL	lectin, mannose-binding 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-176836849-4	chr1	176836375	176837375	+	886.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037996)	promoter-TSS (NR_037996)	-742.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	94.0	257.5	222.0	117.5	273.0	146.5
Merged-chr6-134263075-4	chr6	134262557	134263557	+	886.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007961, exon 7 of 8)	exon (NM_007961, exon 7 of 8)	-133272.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	21.0	73.5	37.0	71.0	129.5	48.5
Merged-chr16-24935487-3	chr16	24934975	24935975	+	886.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	B3A|SINE|B2	-124164.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106343063-3	chr8	106342554	106343554	+	886.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5066.0	NM_021491	58994.0	Mm.23298	NM_021491	ENSMUSG00000031906	Smpd3	4631433G07Rik|AI427456|AW537966|fro|nSMase2	sphingomyelin phosphodiesterase 3, neutral	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-108268416-4	chr13	108267915	108268915	+	886.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029001, intron 3 of 7)	intron (NM_029001, intron 3 of 7)	-47922.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21372087-3	chr5	21371572	21372572	+	886.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008013)	promoter-TSS (NM_008013)	-601.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58552847-4	chr9	58552365	58553365	+	886.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11925.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105345765-3	chr8	105345278	105346278	+	886.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	2192.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40333814-3	chr9	40333289	40334289	+	886.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 2 of 20)	intron (NM_001357617, intron 2 of 20)	317.0	NR_040728	73558.0	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-13146463-3	chr17	13145970	13146970	+	886.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12B|LTR|ERVK	-14679.0	NM_199252	381058.0	Mm.390935	NM_199252	ENSMUSG00000067049	Unc93a	Unc93l|unc-93A	unc-93 homolog A (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20898763-2	chr11	20898263	20899263	+	886.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67655.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118716523-4	chr10	118716018	118717018	+	886.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	152385.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	1.5	1.0	0.0	0.0	0.0	1.5
Merged-chr4-33284614-4	chr4	33284091	33285091	+	886.3095089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25720.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44468554-4	chr11	44468066	44469066	+	886.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024475, intron 1 of 10)	intron (NM_024475, intron 1 of 10)	1982.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	11.5	18.0	4.0	18.0	16.5	6.0
Merged-chr19-45659739-4	chr19	45659179	45660179	+	886.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013907, intron 1 of 8)	CpG	514.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-81954558-4	chr11	81954011	81955011	+	886.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034013, intron 1 of 9)	intron (NM_001034013, intron 1 of 9)	13885.0	NM_001034013	11418.0	Mm.234998	NM_007384	ENSMUSG00000020704	Asic2	ACIC2|Accn1|BNC1|BNaC1|BNaC1a|Mdeg	acid-sensing (proton-gated) ion channel 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23739560-4	chr17	23739074	23740074	+	886.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023824, intron 1 of 2)	intron (NM_023824, intron 1 of 2)	756.0	NM_023824	76498.0	Mm.491253	NM_023824	ENSMUSG00000023909	Paqr4	1500004C10Rik	progestin and adipoQ receptor family member IV	protein-coding	6.0	5.5	6.0	16.5	15.0	12.0
Merged-chr12-116620066-4	chr12	116619491	116620491	+	886.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011215, intron 2 of 22)	intron (NM_011215, intron 2 of 22)	134271.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	3.5	6.0	8.0	0.0	3.0	10.5
Merged-chr15-78254975-3	chr15	78254475	78255475	+	886.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008677, intron 5 of 9)	intron (NM_008677, intron 5 of 9)	10164.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	5.0	11.0	4.0	7.0	2.5	4.0
Merged-chr5-64818570-3	chr5	64818110	64819110	+	886.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 2 of 5)	intron (NM_008453, intron 2 of 5)	15087.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22954541-2	chr11	22954041	22955041	+	886.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361661, intron 2 of 2)	intron (NM_001361661, intron 2 of 2)	-17464.0	NM_011663	22183.0	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62880257-2	chr11	62879779	62880779	+	886.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356521, intron 1 of 6)	B1_Mus2|SINE|Alu	824.0	NM_026210	67510.0	Mm.9806	NM_026210	ENSMUSG00000014177	Tvp23b	1810036I24Rik|Fam18b|Fam18b1	trans-golgi network vesicle protein 23B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-6398720-4	chr7	6398230	6399230	+	886.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15412.0	NM_175247	22690.0	Mm.127014	NM_175247	ENSMUSG00000062861	Zfp28	2810438M17Rik|Zfp-28|mkr-5	zinc finger protein 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114460057-2	chr6	114459557	114460557	+	886.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317124, intron 1 of 1)	intron (NM_001317124, intron 1 of 1)	1535.0	NM_001317124	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70826427-2	chr12	70825927	70826927	+	886.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_028127, intron 1 of 13)	intron (NM_028127, intron 1 of 13)	913.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-153408074-4	chr3	153407572	153408572	+	886.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 3 of 4)	intron (NM_011372, intron 3 of 4)	-109423.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19718702-2	chr7	19718202	19719202	+	886.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008990, intron 8 of 8)	B3A|SINE|B2	-3273.0	NM_016871	53333.0	Mm.61682	NM_016871	ENSMUSG00000002984	Tomm40	AW539759|Mom35|Tom40	translocase of outer mitochondrial membrane 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84001218-2	chr12	84000716	84001716	+	886.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8286.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9865053-4	chr3	9864553	9865553	+	886.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-31374.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	1.0	4.5	1.0	3.0	2.5	0.5
Merged-chr2-91098824-4	chr2	91098349	91099349	+	886.241699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011355, intron 1 of 4)	intron (NM_011355, intron 1 of 4)	2171.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	25.0	42.5	25.5	13.5	27.5	19.5
Merged-chr3-27227572-3	chr3	27227091	27228091	+	886.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 3 of 4)	B4A|SINE|B4	44587.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8823339-3	chr4	8822840	8823840	+	886.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 7 of 36)	intron (NM_001355382, intron 7 of 36)	72016.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126829114-3	chr4	126828610	126829610	+	886.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035525, intron 7 of 23)	intron (NM_001035525, intron 7 of 23)	75340.0	NM_001035526	100317.0	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134362764-3	chr4	134362246	134363246	+	886.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355493, intron 4 of 10)	intron (NM_001355493, intron 4 of 10)	9801.0	NM_001355493	56219.0	Mm.30978	NM_019578	ENSMUSG00000028838	Extl1	D430033M16Rik	exostoses (multiple)-like 1	protein-coding	2.5	1.0	1.5	19.5	1.0	4.5
Merged-chr10-127593668-3	chr10	127593155	127594155	+	886.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 9 of 88)	intron (NM_008512, intron 9 of 88)	27493.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	56.5	56.5	74.0	40.5	79.0	42.0
Merged-chr10-62511671-3	chr10	62511164	62512164	+	886.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 1 of 3)	intron (NM_001358965, intron 1 of 3)	-3907.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-104190524-4	chr12	104190019	104191019	+	886.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23935.0	NM_009251	20715.0	Mm.312628	NM_009251		Serpina3g	2A2|AI119734|Spi2-1|Spi2/eb.1|Spi2A|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3G	protein-coding	10.5	35.0	19.0	0.0	5.5	1.0
Merged-chr11-114666854-2	chr11	114666354	114667354	+	886.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C2|LTR|ERVK	-1689.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73584230-4	chr7	73583717	73584717	+	886.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25822.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69189665-4	chr8	69189177	69190177	+	886.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19369.0	NM_001013379	234358.0	Mm.334577	NM_001013379	ENSMUSG00000059897	Zfp930	-	zinc finger protein 930	protein-coding	12.0	63.5	43.0	38.0	126.5	80.0
Merged-chr12-81532872-4	chr12	81532325	81533325	+	886.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001309848)	promoter-TSS (NM_001309848)	86.0	NM_001309847	105940408.0		NM_001309847	ENSMUSG00000021139	Gm20498	ARIP2a|Synj2bp-cox16	predicted gene 20498	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-13869297-4	chr17	13868867	13869867	+	886.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151731, intron 22 of 33)	MTA_Mm|LTR|ERVL-MaLR	-79006.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147431720-2	chr4	147431220	147432220	+	886.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	-121557.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-109862736-2	chr9	109862236	109863236	+	886.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12843.0	NM_007658	12530.0	Mm.307103	NM_007658	ENSMUSG00000032477	Cdc25a	D9Ertd393e	cell division cycle 25A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44172394-4	chr16	44171906	44172906	+	886.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029889)	promoter-TSS (NM_001029889)	-991.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-67125697-3	chr11	67125192	67126192	+	886.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5612.0	NR_038055	74184.0	Mm.162554	NR_038055	ENSMUSG00000087410	2310065F04Rik	linc-Myh	RIKEN cDNA 2310065F04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-149641757-3	chr5	149641203	149642203	+	886.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5367.0	NM_001347534	15505.0	Mm.270681	NM_013559	ENSMUSG00000029657	Hsph1	105kDa|AI790491|Hsp105|Hsp110|hsp-E7I|hsp110/105	heat shock 105kDa/110kDa protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75218130-4	chr8	75217628	75218628	+	886.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029182, intron 1 of 2)	intron (NM_029182, intron 1 of 2)	4184.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	0.0	1.5	1.5	0.0	1.5	1.5
Merged-chr14-72532278-2	chr14	72531778	72532778	+	886.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	177725.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53232599-4	chr18	53232128	53233128	+	886.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_I-int|LTR|ERV1	-13034.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-8433715-2	chr16	8433216	8434216	+	886.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D5|LTR|ERVK	-8580.0	NM_029070	74720.0	Mm.159318	NM_029070	ENSMUSG00000022715	Tmem114	4930511J11Rik|Cldn26	transmembrane protein 114	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59369626-3	chr10	59369130	59370130	+	886.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001316371, exon 14 of 15)	exon (NM_001316371, exon 14 of 15)	-34055.0	NM_023530	69836.0	Mm.30268	NM_023530	ENSMUSG00000009646	Pla2g12b	2010002E04Rik|Fksg71|Pla2g13|hlb218	phospholipase A2, group XIIB	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-41191291-4	chr9	41190788	41191788	+	886.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14867.0	NR_040392	78500.0	Mm.275715	NR_040392	ENSMUSG00000100837	1700063D05Rik	-	RIKEN cDNA 1700063D05 gene	ncRNA	1.0	9.5	0.0	1.0	3.0	2.0
Merged-chr18-67606237-4	chr18	67605708	67606708	+	886.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35147.0	NM_001357523	225659.0	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	3.5	19.5	4.5	0.0	16.5	12.5
Merged-chr14-25855451-4	chr14	25855045	25856045	+	886.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013469, intron 1 of 14)	intron (NM_013469, intron 1 of 14)	13390.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	3.0	28.5	6.5	4.5	11.5	7.0
Merged-chr18-37933256-4	chr18	37932779	37933779	+	886.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305981, intron 1 of 28)	intron (NM_001305981, intron 1 of 28)	2197.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75090599-2	chr8	75090099	75091099	+	886.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3019.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	29.0	29.0	31.5	29.0	35.5	36.5
Merged-chr10-93069455-3	chr10	93068964	93069964	+	886.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347060, intron 2 of 67)	intron (NM_001347060, intron 2 of 67)	12132.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	21.0	38.5	23.0	9.0	10.5	4.0
Merged-chr10-63308790-3	chr10	63308292	63309292	+	886.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359484, intron 17 of 22)	intron (NM_001359484, intron 17 of 22)	30243.0	NM_019812	93759.0	Mm.351459	NM_019812	ENSMUSG00000020063	Sirt1	AA673258|SIR2L1|Sir2|Sir2a|Sir2alpha	sirtuin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83113048-3	chr15	83112506	83113506	+	886.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023475, intron 9 of 11)	intron (NM_023475, intron 9 of 11)	9795.0	NM_001358061	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123026192-4	chr8	123025740	123026740	+	886.1062619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	B1F|SINE|Alu	16044.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-65347069-3	chr14	65346538	65347538	+	886.0944210000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11638.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	3.0	8.5	9.5	0.0	0.5	12.5
Merged-chr12-86891572-2	chr12	86891072	86892072	+	886.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6758.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122166345-2	chr2	122165841	122166841	+	886.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_080510, intron 1 of 6)	L1Md_F2|LINE|L1	5641.0	NM_080510	70928.0	Mm.379188	NM_080510	ENSMUSG00000033368	Trim69	4921519C19Rik|Rnf36|Trif|Trimless	tripartite motif-containing 69	protein-coding	1.5	5.5	14.5	1.5	2.5	2.0
Merged-chr13-109262647-4	chr13	109262136	109263136	+	886.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	UCON26|Unknown|Unknown	-62108.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113381937-4	chr13	113381424	113382424	+	886.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	120920.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64018982-7	chr9	64018445	64019445	+	886.078247	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 1 of 3)	intron (NM_008542, intron 1 of 3)	3114.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108730108-4	chr8	108729598	108730598	+	886.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	15454.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83086100-4	chr15	83085593	83086593	+	886.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14112.0	NM_023475	68607.0	Mm.30056	NM_023475	ENSMUSG00000058586	Serhl	0610008B10Rik|1110019M09Rik|AU019786	serine hydrolase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17680441-4	chr12	17679927	17680927	+	886.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10382.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	36.5	100.0	50.5	17.0	60.0	51.0
Merged-chr4-30959111-3	chr4	30958589	30959589	+	886.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	294493.0	NR_040655	75332.0	Mm.108636	NR_040655		4930556G01Rik	-	RIKEN cDNA 4930556G01 gene	ncRNA	8.0	0.5	2.0	11.0	0.5	2.0
Merged-chr1-155982929-3	chr1	155982448	155983448	+	886.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie10a|DNA|hAT-Charlie	-9693.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	24.5	58.0	45.0	3.0	16.5	15.5
Merged-chr2-52591083-4	chr2	52590579	52591579	+	886.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	-32468.0	NM_001285427	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-28677209-4	chr19	28676743	28677743	+	886.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045330)	promoter-TSS (NR_045330)	-981.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-162549213-4	chr1	162548707	162549707	+	886.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144877)	promoter-TSS (NM_144877)	-862.0	NM_144877	71449.0	Mm.270569	NM_144877	ENSMUSG00000026694	Mettl13	5630401D24Rik	methyltransferase like 13	protein-coding	80.0	143.5	112.5	74.0	152.0	131.5
Merged-chr11-78267991-4	chr11	78267476	78268476	+	886.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002004, intron 11 of 38)	intron (NM_001002004, intron 11 of 38)	6222.0	NM_001002004	72503.0	Mm.237103	NM_001002004	ENSMUSG00000010277	2610507B11Rik	AU022687|D11Bhm178e|D11Bhm179e|E1|Kiaa0100|mKIAA0100	RIKEN cDNA 2610507B11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132011660-4	chr4	132011138	132012138	+	886.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	37440.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73453066-7	chr2	73452560	73453560	+	886.0238039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	829.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12757177-2	chr17	12756677	12757677	+	886.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010515, intron 1 of 47)	intron (NM_010515, intron 1 of 47)	12529.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81552799-2	chr10	81552334	81553334	+	886.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6610.0	NR_074087	14797.0	Mm.180013	NM_010347	ENSMUSG00000054452	Aes	AL024115|Esp1|Grg|Grg-5|Grg5|Tle5	amino-terminal enhancer of split	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-12940772-1	chr10	12940272	12941272	+	886.0	f0_balb.idr	3' UTR (NM_029075, exon 3 of 3)	3' UTR (NM_029075, exon 3 of 3)	-17645.0	NR_038028	320273.0	Mm.417706	NR_038027	ENSMUSG00000097378	B230208H11Rik	-	RIKEN cDNA B230208H11 gene	ncRNA	16.5	10.0	5.0	6.0	8.0	8.5
Merged-chr4-59460229-2	chr4	59459729	59460729	+	886.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21596.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95860155-2	chr11	95859655	95860655	+	886.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045187, exon 2 of 2)	non-coding (NR_045187, exon 2 of 2)	1338.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	17.0	59.5	26.5	22.0	63.5	36.5
Merged-chr11-83657586-3	chr11	83657086	83658086	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4998.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-21735919-3	chr3	21735413	21736413	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_2-LTR_MM|LTR|ERVK	-340739.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96148153-4	chr3	96147645	96148645	+	886.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025613, intron 7 of 12)	intron (NM_001025613, intron 7 of 12)	-13825.0	NM_181409	194126.0	Mm.268536	NM_181409	ENSMUSG00000045934	Mtmr11	AI035306|BC051083|Cra	myotubularin related protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18372884-2	chr2	18372372	18373372	+	886.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190817, intron 1 of 12)	intron (NM_001190817, intron 1 of 12)	19958.0	NM_001190817	13418.0	Mm.246674	NM_007869	ENSMUSG00000026740	Dnajc1	4733401K02Rik|AA960110|D230036H06Rik|Dnajl1|ERdj1|ERj1p|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46891256-3	chr17	46890705	46891705	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178385, exon 1 of 1)	exon (NM_178385, exon 1 of 1)	584.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-53448437-4	chr3	53447952	53448952	+	886.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14806.0	NM_172501	212114.0	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57977025-3	chr15	57976528	57977528	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8875.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18425880-3	chr16	18425391	18426391	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013711)	promoter-TSS (NM_013711)	-526.0	NM_001353143	26462.0	Mm.390906	NM_013711	ENSMUSG00000075704	Txnrd2	AA118373|ESTM573010|TGR|Tr3|Trxr2|Trxrd2	thioredoxin reductase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27558901-2	chr17	27558401	27559401	+	886.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039356, intron 2 of 5)	intron (NM_001039356, intron 2 of 5)	2248.0	NM_001166477	111241.0	Mm.426212	NM_001166476	ENSMUSG00000078249	Hmga1b	Hmga1-rs1|Hmgi-rs1	high mobility group AT-hook 1B	protein-coding	0.5	0.0	3.5	0.0	0.0	4.0
Merged-chr12-102506209-1	chr12	102505709	102506709	+	886.0	f0_balb.idr	Intergenic	Intergenic	36299.0	NM_013747	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	3.0	0.0	0.5	12.0	0.0	3.5
Merged-chr17-71102095-2	chr17	71101595	71102595	+	886.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083934, intron 24 of 36)	intron (NM_001083934, intron 24 of 36)	-81437.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	2.0	17.0	10.5	5.5	14.0	3.5
Merged-chr1-77830330-2	chr1	77829830	77830830	+	886.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-315242.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-48306115-2	chr7	48305615	48306615	+	886.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-82411.0	NM_207539	404240.0	Mm.357942	NM_207539	ENSMUSG00000050870	Mrgprb8	MrgB8	MAS-related GPR, member B8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17835873-2	chr17	17835373	17836373	+	886.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162909, intron 2 of 8)	intron (NM_001162909, intron 2 of 8)	4898.0	NM_001162909	75202.0	Mm.227456	NM_029205	ENSMUSG00000080316	Spaca6	4930546H06Rik|9530079D04Rik|B230206P06Rik|Ncrna00085|SPACA6A|let-7e|mir-125a|mir-99b	sperm acrosome associated 6	protein-coding	0.5	0.0	2.0	7.0	3.0	0.0
Merged-chr12-99349860-3	chr12	99349369	99350369	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 2 of 5)	intron (NM_183186, intron 2 of 5)	100205.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117078442-4	chr10	117077929	117078929	+	886.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177798, intron 7 of 9)	ORR1C1|LTR|ERVL-MaLR	-14577.0	NM_007636	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-27206530-2	chr8	27206030	27207030	+	886.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3983.0	NM_029674	76615.0	Mm.272794	NM_029674	ENSMUSG00000039720	Got1l1	1700083M11Rik	glutamic-oxaloacetic transaminase 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92934424-4	chr5	92933906	92934906	+	886.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077596, intron 3 of 9)	MIR|SINE|MIR	36413.0	NM_001077596	27428.0	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	16.0	21.0	30.5	3.0	4.5	7.5
Merged-chr16-8688215-2	chr16	8687715	8688715	+	886.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001003918)	TTS (NM_001003918)	7445.0	NM_001324517	436336.0	Mm.357666	NM_001324517		Gm5767	EG436336|Gm43786	predicted gene 5767	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13732400-2	chr16	13731900	13732900	+	886.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040574, intron 1 of 2)	intron (NR_040574, intron 1 of 2)	-1916.0	NM_011987	26565.0	Mm.4214	NM_011987	ENSMUSG00000022683	Pla2g10	GX sPLA2|PLA2GX|sPLA2-X	phospholipase A2, group X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58623602-2	chr9	58623102	58624102	+	886.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357751, intron 2 of 8)	intron (NM_001357751, intron 2 of 8)	41362.0	NM_001357751	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45396416-4	chr7	45395928	45396928	+	886.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009224)	promoter-TSS (NM_009224)	-686.0	NR_126538	20637.0	Mm.216386	NM_009224	ENSMUSG00000063511	Snrnp70	2700022N21Rik|3200002N22Rik|AI325098|R74807|Rnu1p70|Rnulp70|Snrp70|Srnp70|U1-70|U1-70K	small nuclear ribonucleoprotein 70 (U1)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-48131779-4	chr14	48131263	48132263	+	886.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033602, intron 1 of 5)	intron (NM_033602, intron 1 of 5)	10894.0	NM_033602	93834.0	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	0.0	8.0	5.5	4.0	20.0	20.0
Merged-chr12-16904100-3	chr12	16903599	16904599	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009072, intron 1 of 32)	ORR1D2|LTR|ERVL-MaLR	9121.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	5.0	0.0	2.0	4.0	3.5	2.0
Merged-chr9-66349886-3	chr9	66349378	66350378	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145617)	promoter-TSS (NM_145617)	-572.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130797987-3	chr4	130797490	130798490	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	5453.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120915434-4	chr6	120914950	120915950	+	886.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007544, intron 1 of 5)	intron (NM_007544, intron 1 of 5)	1374.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	0.0	0.0	0.5	1.0	1.5	0.0
Merged-chr12-79060960-4	chr12	79060464	79061464	+	886.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181073, intron 7 of 28)	intron (NM_181073, intron 7 of 28)	28706.0	NM_029988	110417.0	Mm.268317	NM_029988	ENSMUSG00000021120	Pigh	2210416H01Rik|A930028P05Rik	phosphatidylinositol glycan anchor biosynthesis, class H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-153583324-2	chr3	153582824	153583824	+	886.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 1 of 4)	intron (NM_011372, intron 1 of 4)	141809.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164414809-4	chr2	164414305	164415305	+	886.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009036, exon 12 of 12)	3' UTR (NM_009036, exon 12 of 12)	-9645.0	NM_001252563	17183.0	Mm.29428	NM_013592	ENSMUSG00000016995	Matn4	matrilin-4	matrilin 4	protein-coding	0.0	0.0	0.0	1.5	6.0	5.0
Merged-chr8-13493604-3	chr8	13493045	13494045	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019521, intron 2 of 14)	intron (NM_019521, intron 2 of 14)	990.0	NM_019521	14456.0	Mm.3982	NM_019521	ENSMUSG00000031451	Gas6	Gas-6	growth arrest specific 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44375840-2	chr7	44375284	44376284	+	886.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027049)	promoter-TSS (NM_027049)	-754.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23431126-4	chr18	23430622	23431622	+	886.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361217, intron 1 of 20)	intron (NM_001361217, intron 1 of 20)	15713.0	NM_001361217	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53391957-2	chr19	53391457	53392457	+	886.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	-1323.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40815266-3	chr9	40814776	40815776	+	886.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	14003.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	11.5	29.0	8.5	0.0	2.0	0.0
Merged-chr8-115419812-2	chr8	115419312	115420312	+	886.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	287082.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26443245-2	chr8	26442751	26443751	+	886.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	285082.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94433600-3	chr8	94433122	94434122	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015514, exon 3 of 3)	non-coding (NR_015514, exon 3 of 3)	1481.0	NR_015514	320377.0	Mm.486022	NR_015514		9330175E14Rik	A630085K21	RIKEN cDNA 9330175E14 gene	ncRNA	1.5	18.5	7.0	8.5	10.0	3.0
Merged-chr19-7058478-2	chr19	7057978	7058978	+	886.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134147, intron 1 of 10)	intron (NM_134147, intron 1 of 10)	1710.0	NM_134147	107227.0	Mm.439977	NM_134147	ENSMUSG00000036278	Macrod1	AI604841|AW743046|D930010J01Rik|Lrp16	MACRO domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65776821-3	chr5	65776332	65777332	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024917, intron 3 of 19)	RMER4B|LTR|ERVK	13311.0	NM_001024917	333789.0	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	30.0	27.0	27.0	18.5	18.5	25.0
Merged-chr11-45925760-2	chr11	45925260	45926260	+	886.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER135|DNA|DNA	19175.0	NM_028185	72290.0	Mm.249827	NM_028185	ENSMUSG00000044847	Lsm11	2210404M20Rik|AV079530	U7 snRNP-specific Sm-like protein LSM11	protein-coding	3.0	1.0	2.0	0.0	0.0	1.0
Merged-chr5-145118402-2	chr5	145117902	145118902	+	886.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023142, intron 1 of 9)	intron (NM_023142, intron 1 of 9)	4146.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116086465-3	chr9	116085929	116086929	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88934.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	1.5	1.5	3.5	19.5	8.0	14.0
Merged-chr9-96644226-2	chr9	96643727	96644727	+	886.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-12724.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	0.5	0.0	1.5	0.5	3.5	0.5
Merged-chr3-51413551-3	chr3	51413076	51414076	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2440.0	NM_053089	74838.0	Mm.275281	NM_053089	ENSMUSG00000063273	Naa15	5730450D16Rik|6330400I15|ASTBDN|Narg1|Tbdn-1|mNAT1	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141339345-2	chr7	141338845	141339845	+	886.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282073)	promoter-TSS (NM_001282073)	343.0	NM_133191	98845.0	Mm.27451	NM_133191	ENSMUSG00000025504	Eps8l2	AI042819|AW545405|Eps8r2	EPS8-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-106788774-5	chr3	106788382	106789382	+	885.9799800000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007651, intron 1 of 7)	intron (NM_007651, intron 1 of 7)	1267.0	NM_007651	12508.0	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21831551-3	chr13	21831104	21832104	+	885.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175657).2	TTS (NM_175657).2	554.0	NM_175657	319161.0	Mm.261664	NM_175657	ENSMUSG00000069305	Hist1h4n	-	histone cluster 1, H4n	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45547335-3	chr9	45546820	45547820	+	885.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-116088.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57537725-6	chr9	57537242	57538242	+	885.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001166364, exon 1 of 5)	exon (NM_001166364, exon 1 of 5)	214.0	NM_001166364	78323.0	Mm.25814	NM_175273	ENSMUSG00000032305	Fam219b	2310046O06Rik|AI594866	family with sequence similarity 219, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-178338443-4	chr1	178337951	178338951	+	885.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016805)	promoter-TSS (NM_016805)	-636.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46894467-4	chr8	46893923	46894923	+	885.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92464.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113222934-2	chr12	113222434	113223434	+	885.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37031.0	NM_153776	69195.0	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	0.0	2.0	0.0	1.0	3.5	3.5
Merged-chr12-69696930-2	chr12	69696430	69697430	+	885.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145443, intron 9 of 9)	MER20|DNA|hAT-Charlie	-15078.0	NM_001135559	20663.0	Mm.3770	NM_001135559	ENSMUSG00000034801	Sos2	SOS-2|mSOS-2	SOS Ras/Rho guanine nucleotide exchange factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60176146-5	chr2	60175545	60176545	+	885.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33891.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95957566-4	chr3	95957069	95958069	+	885.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27941.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	1.0	15.5	5.0	1.5	11.0	4.0
Merged-chr1-95668542-4	chr1	95668013	95669013	+	885.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009183)	promoter-TSS (NM_009183)	-919.0	NM_001159745	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109143602-3	chr4	109143105	109144105	+	885.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346502, intron 3 of 23)	intron (NM_001346502, intron 3 of 23)	-5692.0	NM_001355190	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-149946693-4	chr1	149946184	149947184	+	885.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	14606.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37638790-4	chr1	37638263	37639263	+	885.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028096, intron 2 of 9)	intron (NM_028096, intron 2 of 9)	81048.0	NM_028096	72097.0	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122566838-4	chr8	122566333	122567333	+	885.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1182.0	NM_026014	67177.0	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	66.5	151.0	118.0	63.5	154.0	128.0
Merged-chr10-127520502-6	chr10	127519967	127520967	+	885.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028230, intron 2 of 11)	intron (NM_028230, intron 2 of 11)	1977.0	NM_001252316	108037.0	Mm.29890	NM_028230	ENSMUSG00000025403	Shmt2	2700043D08Rik|AA408223|AA986903|SHMT	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding	10.0	1.5	0.5	10.0	0.0	6.0
Merged-chr5-65092140-4	chr5	65091642	65092642	+	885.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15426.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-27794099-2	chr5	27793586	27794586	+	885.833374	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2536.0	NM_018878	55982.0	Mm.277190	NM_018878	ENSMUSG00000002221	Paxip1	D5Ertd149e|PTIP	PAX interacting (with transcription-activation domain) protein 1	protein-coding	0.0	10.5	8.5	7.5	0.0	5.0
Merged-chr9-83570074-3	chr9	83569564	83570564	+	885.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	21726.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0.5	20.0	7.0	3.5	10.5	11.5
Merged-chr3-51789623-4	chr3	51789140	51790140	+	885.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	128461.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3739699-2	chr12	3739199	3740199	+	885.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 12 of 17)	intron (NM_001162465, intron 12 of 17)	-67281.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-14985439-4	chr14	14984943	14985943	+	885.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195229, intron 30 of 34)	intron (NM_001195229, intron 30 of 34)	164628.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96915079-2	chr11	96914579	96915579	+	885.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_030248, intron 2 of 13)	intron (NM_030248, intron 2 of 13)	1435.0	NM_001308183	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137730294-4	chr4	137729803	137730803	+	885.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001331215)	TTS (NM_001331215)	5842.0	NR_138592	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	2.0	6.5	5.5	1.5	6.5	2.0
Merged-chr19-56776280-3	chr19	56775745	56776745	+	885.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37438.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-42645417-3	chr6	42644933	42645933	+	885.822205	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146174)	promoter-TSS (NM_146174)	-392.0	NM_146174	232748.0	Mm.279659	NM_146174	ENSMUSG00000029851	Tcaf2	Fam115c	TRPM8 channel-associated factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-78485474-4	chr1	78484988	78485988	+	885.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001278075, intron 1 of 17)	MLT1F2-int|LTR|ERVL-MaLR	3409.0	NR_102758	23874.0	Mm.17898	NM_011811	ENSMUSG00000026245	Farsb	C76708|Farsa|Farsl|Farslb|Frsb	phenylalanyl-tRNA synthetase, beta subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-3270126-4	chr15	3269624	3270624	+	885.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009155)	promoter-TSS (NM_009155)	-643.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90907714-6	chr5	90907159	90908159	+	885.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3760.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-36953362-3	chr14	36952887	36953887	+	885.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027045, intron 1 of 10)	Lx9|LINE|L1	-12123.0	NM_001347502	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43799740-4	chr5	43799244	43800244	+	885.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17595.0	NM_178729	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	7.0	0.0	7.0	1.0	17.0	9.0
Merged-chr4-132063225-3	chr4	132062726	132063726	+	885.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	L2a|LINE|L2	8871.0	NM_183428	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108626615-3	chr9	108626115	108627115	+	885.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151664, intron 3 of 15)	intron (NR_151664, intron 3 of 15)	22793.0	NM_011790	23807.0	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-99306382-4	chr13	99305880	99306880	+	885.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38298.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	0.0	1.5	0.0	0.0	3.5	0.0
Merged-chr9-41069119-2	chr9	41068620	41069620	+	885.75	f0_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	10386.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	3.5	9.0	2.5	9.5	14.5	16.0
Merged-chr15-81019368-2	chr15	81018868	81019868	+	885.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 8 of 13)	intron (NM_001082536, intron 8 of 13)	41603.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92705864-4	chr16	92705320	92706320	+	885.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-8491.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30425464-2	chr7	30424964	30425964	+	885.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172142, intron 4 of 10)	intron (NM_172142, intron 4 of 10)	2189.0	NM_172142	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	9.0	7.5	10.0	1.5	1.5	6.5
Merged-chr8-46740572-4	chr8	46740101	46741101	+	885.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	CpG	856.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-36253225-2	chr8	36252706	36253706	+	885.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3690.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	7.0	3.5	1.0	2.5	0.0	0.5
Merged-chr19-17361400-4	chr19	17360911	17361911	+	885.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010265, intron 1 of 2)	MTD|LTR|ERVL-MaLR	-4744.0	NM_173442	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	24.0	22.0	27.0	39.5	45.0	34.5
Merged-chr8-47676834-2	chr8	47676334	47677334	+	885.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1675.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-29389507-2	chr5	29389030	29390030	+	885.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11140.0	NM_020295	56873.0	Mm.41572	NM_020295	ENSMUSG00000010721	Lmbr1	1110048D14Rik|AU017641	limb region 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8744087-2	chr10	8743587	8744587	+	885.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 12 of 19)	MTEb|LTR|ERVL-MaLR	141983.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr7-30959071-2	chr7	30958558	30959558	+	885.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164184, intron 5 of 8)	intron (NM_001164184, intron 5 of 8)	-2255.0	NM_011680	22282.0	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114268421-2	chr6	114267930	114268930	+	885.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-14205.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97963593-2	chr15	97963085	97964085	+	885.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252153)	promoter-TSS (NM_001252153)	-644.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-56765440-2	chr13	56764929	56765929	+	885.7333369999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61761.0	NM_001164042	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	0.5	7.0	7.5	0.0	5.0	3.0
Merged-chr7-97148634-3	chr7	97148122	97149122	+	885.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	L1MB3|LINE|L1	66871.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.0	8.5	6.5	0.0	5.5	4.0
Merged-chr8-105375239-3	chr8	105374742	105375742	+	885.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081333)	promoter-TSS (NM_001081333)	-139.0	NM_001081333	102075.0	Mm.32034	NM_175321	ENSMUSG00000014782	Plekhg4	4931414L13Rik|AI448583|mFLJ00068	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-154510415-4	chr3	154509946	154510946	+	885.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86265.0	NM_009968	12972.0	Mm.374855	NM_009968	ENSMUSG00000028199	Cryz	Sez9	crystallin, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124966132-4	chr6	124965619	124966619	+	885.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164089)	promoter-TSS (NM_001164089)	-581.0	NM_001164089	26894.0	Mm.244536	NM_012003	ENSMUSG00000030127	Cops7a	D6Ertd35e|SGN7a	COP9 signalosome subunit 7A	protein-coding	60.0	145.0	98.5	74.0	137.0	86.5
Merged-chr14-51989790-4	chr14	51989300	51990300	+	885.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045728)	promoter-TSS (NR_045728)	-971.0	NR_045728	100502764.0	Mm.437219	NR_045728	ENSMUSG00000097633	Gm16617	-	predicted gene, 16617	ncRNA	7.0	0.0	4.0	2.0	0.0	3.0
Merged-chr3-107754846-4	chr3	107754352	107755352	+	885.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007778, intron 3 of 8)	intron (NM_007778, intron 3 of 8)	5617.0	NM_001113530	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191110638-3	chr1	191110162	191111162	+	885.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12248.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	104.0	223.0	106.0	68.0	212.5	124.5
Merged-chr1-131091029-4	chr1	131090515	131091515	+	885.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	6828.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	7.5	28.5	18.5	8.0	24.5	28.0
Merged-chr13-101696063-4	chr13	101695572	101696572	+	885.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 7 of 15)	intron (NM_001077495, intron 7 of 15)	-3442.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-84918674-3	chr11	84918165	84919165	+	885.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2299.0	NM_001005223	448850.0	Mm.379733	NM_001005223	ENSMUSG00000020526	Znhit3	Myohd1|TRIP-3|Trip3	zinc finger, HIT type 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-126468007-3	chr2	126467498	126468498	+	885.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 3 of 27)	intron (NM_001359975, intron 3 of 27)	23555.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141016222-3	chr4	141015730	141016730	+	885.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008546)	TTS (NM_008546)	5593.0	NM_008546	17150.0	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5038333-4	chr19	5037820	5038820	+	885.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175383)	promoter-TSS (NM_175383)	-506.0	NM_175383	108902.0	Mm.29628	NM_175383	ENSMUSG00000047379	B4gat1	1500032M01Rik|B3gnt1|B3gnt6|BETA3GNT1|iGAT|iGNT	beta-1,4-glucuronyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-104750769-3	chr2	104750268	104751268	+	885.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-7967.0	NM_144804	211896.0	Mm.288805	NM_144804	ENSMUSG00000027173	Depdc7	AV216087	DEP domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr2-102989972-3	chr2	102989442	102990442	+	885.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83571.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57449783-3	chr17	57449311	57450311	+	885.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 16 of 22)	intron (NM_001355722, intron 16 of 22)	91125.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105553048-4	chr8	105552552	105553552	+	885.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013477, intron 1 of 7)	intron (NM_013477, intron 1 of 7)	13012.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38536908-4	chr16	38536392	38537392	+	885.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153380, intron 6 of 10)	intron (NR_153380, intron 6 of 10)	13364.0	NR_153380	224143.0	Mm.284366	NM_172380	ENSMUSG00000034064	Poglut1	9630046K23Rik|Clp46|Ktelc1|Rumi|wsnp	protein O-glucosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9171261-3	chr13	9170761	9171761	+	885.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001311117, exon 17 of 17)	3' UTR (NM_001311117, exon 17 of 17)	77380.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83742860-3	chr7	83742338	83743338	+	885.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7299.0	NM_010551	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	16.0	60.5	36.5	13.0	16.0	8.0
Merged-chr7-19178930-4	chr7	19178455	19179455	+	885.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347582, intron 1 of 21)	intron (NM_001347582, intron 1 of 21)	-2215.0	NM_001162996	72205.0	Mm.154121	NM_028153	ENSMUSG00000040811	Eml2	1600029N02Rik|EMAP-2	echinoderm microtubule associated protein like 2	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr13-54956234-3	chr13	54955708	54956708	+	885.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153131, intron 1 of 15)	CpG	6797.0	NM_001311128	107448.0	Mm.23573	NM_153131	ENSMUSG00000025876	Unc5a	Unc5h1|mKIAA1976	unc-5 netrin receptor A	protein-coding	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24638268-4	chr7	24637768	24638768	+	885.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133743, intron 2 of 4)	intron (NM_133743, intron 2 of 4)	1698.0	NM_133743	72434.0	Mm.281093	NM_133743	ENSMUSG00000057454	Lypd3	2310061G07Rik|C4.4a	Ly6/Plaur domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18773253-3	chr2	18772762	18773762	+	885.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12400.0	NR_126079	100041479.0	Mm.393659	NR_126079	ENSMUSG00000092353	Gm3363	-	predicted gene 3363	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102688777-3	chr4	102688274	102689274	+	885.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71361.0	NM_001285860	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	2.0	1.0	1.0	0.0	1.0	0.0
Merged-chr16-25053739-3	chr16	25053230	25054230	+	885.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5909.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138007173-4	chr4	138006726	138007726	+	885.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355699, intron 1 of 32)	B2_Mm2|SINE|B2	9401.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	21.5	51.5	32.0	9.5	51.0	32.0
Merged-chr1-73901789-2	chr1	73901289	73902289	+	885.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37323.0	NR_045311	109198.0	Mm.359721	NR_045311	ENSMUSG00000100301	6030407O03Rik	-	RIKEN cDNA 6030407O03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60743844-2	chr18	60743344	60744344	+	885.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	2902.0	NM_001348101	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	3.0	10.0	8.0	5.5	13.5	9.0
Merged-chr16-10547735-2	chr16	10547235	10548235	+	885.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_177562, intron 1 of 22)	intron (NM_177562, intron 1 of 22)	2396.0	NM_001204229	74374.0	Mm.159176	NM_177562	ENSMUSG00000068663	Clec16a	4932416N17Rik|curt|mKIAA0350	C-type lectin domain family 16, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111458780-4	chr12	111458279	111459279	+	885.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16118.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-52426096-4	chr10	52425595	52426595	+	885.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030250, intron 1 of 4)	MTD|LTR|ERVL-MaLR	8548.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-62821011-4	chr5	62820507	62821507	+	885.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 2 of 8)	intron (NM_001170705, intron 2 of 8)	7184.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	14.0	59.0	34.0	15.5	53.5	45.0
Merged-chr8-88650258-6	chr8	88649664	88650664	+	885.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 1 of 12)	intron (NM_145857, intron 1 of 12)	2817.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	56.5	139.0	56.0	59.5	127.5	107.0
Merged-chr6-129535748-2	chr6	129535248	129536248	+	885.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_020590, intron 1 of 3)	intron (NM_020590, intron 1 of 3)	-2464.0	NR_045270	100504641.0	Mm.398286	NR_045270	ENSMUSG00000097675	1700101I11Rik	-	RIKEN cDNA 1700101I11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60624498-3	chr18	60624007	60625007	+	885.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177340)	promoter-TSS (NM_177340)	-202.0	NM_177340	104027.0	Mm.252321	NM_177340	ENSMUSG00000043079	Synpo	9030217H17Rik|9130229N11|9330140I15Rik|AW046661	synaptopodin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75066106-4	chr14	75065602	75066602	+	885.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	50075.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98830885-4	chr15	98830432	98831432	+	885.587524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033276)	TTS (NM_001033276)	576.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95296274-4	chr3	95295758	95296758	+	885.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_199475)	TTS (NM_199475)	10546.0	NM_001085383	71790.0	Mm.218844	NM_023628	ENSMUSG00000015702	Anxa9	1110003P15Rik|2310069F17Rik	annexin A9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-12323775-4	chr12	12323291	12324291	+	885.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 2 of 11)	intron (NM_001146119, intron 2 of 11)	61652.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	2.5	2.0	5.5	2.5	2.0	5.5
Merged-chr15-55191367-4	chr15	55190888	55191888	+	885.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037937, intron 4 of 8)	MTC|LTR|ERVL-MaLR	57952.0	NM_001037937	97998.0	Mm.295397	NM_145470	ENSMUSG00000022419	Deptor	Depdc6	DEP domain containing MTOR-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-122808317-3	chr4	122807817	122808817	+	885.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-27910.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4647500-4	chr7	4647029	4648029	+	885.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172894, intron 1 of 23)	intron (NM_172894, intron 1 of 23)	11421.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83634810-3	chr6	83634312	83635312	+	885.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21304.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	30.0	60.5	41.0	57.0	38.5	69.5
Merged-chr11-50228878-4	chr11	50228410	50229410	+	885.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145926, intron 1 of 14)	intron (NM_145926, intron 1 of 14)	-3335.0	NR_105884	102466765.0		NR_105884	ENSMUSG00000098474	Mir6919	Gm27889|mmu-mir-6919	microRNA 6919	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-37786958-3	chr15	37786409	37787409	+	885.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359844, intron 1 of 7)	L1MB3|LINE|L1	5091.0	NM_001170866	52589.0	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-105296349-3	chr14	105295851	105296851	+	885.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029561, intron 4 of 7)	intron (NM_029561, intron 4 of 7)	37678.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	0.0	1.5	10.0	0.0	1.0	4.0
Merged-chr5-110100443-3	chr5	110099896	110100896	+	885.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281812)	promoter-TSS (NM_001281812)	-163.0	NM_001281812	403178.0	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	1.5	1.0	1.0	3.5	2.0	0.5
Merged-chr10-26890772-4	chr10	26890261	26891261	+	885.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 12 of 14)	intron (NM_176837, intron 12 of 14)	118249.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.0	0.0	0.0	0.0	8.0	1.5
Merged-chr14-54715125-3	chr14	54714574	54715574	+	885.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2900.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	2.5	8.0	6.5	2.5	7.0	9.0
Merged-chr10-17727089-5	chr10	17726636	17727636	+	885.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	3908.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95943393-2	chr16	95942893	95943893	+	885.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14316.0	NR_040484	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-142612196-2	chr2	142611696	142612696	+	885.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR50|LTR|ERVL	289268.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101510090-2	chr13	101509569	101510569	+	885.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112489.0	NR_046187	78136.0	Mm.399065	NR_046187		4922502H24Rik	-	RIKEN cDNA 4922502H24 gene	ncRNA	0.0	4.0	0.5	1.5	8.0	0.0
Merged-chr11-84306300-2	chr11	84305800	84306800	+	885.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133360, intron 33 of 53)	intron (NM_133360, intron 33 of 53)	110862.0	NM_133360	107476.0	Mm.31374	NM_133360	ENSMUSG00000020532	Acaca	A530025K05Rik|Acac|Acc1|Gm738	acetyl-Coenzyme A carboxylase alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-101923908-2	chr3	101923408	101924408	+	885.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039371, intron 1 of 11)	intron (NM_001039371, intron 1 of 11)	545.0	NM_001039371	242126.0	Mm.90204	NM_001039371	ENSMUSG00000033147	Slc22a15	2610034P21Rik|4930477M19|A530052I06Rik|BB219042	solute carrier family 22 (organic anion/cation transporter), member 15	protein-coding	7.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43632059-2	chr4	43631559	43632559	+	885.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355466, exon 1 of 21)	5' UTR (NM_001355466, exon 1 of 21)	124.0	NM_173788	230103.0	Mm.103477	NM_173788	ENSMUSG00000028469	Npr2	GC-B|GC-B2|GC-B3|cn|mNPR-B|pwe	natriuretic peptide receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34007327-2	chr11	34006827	34007827	+	885.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-14134.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22011312-2	chr16	22010858	22011858	+	885.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357424, intron 1 of 15)	tRNA-Ala-GCY_|tRNA|tRNA	1874.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53528891-3	chr18	53528354	53529354	+	885.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033281, intron 2 of 6)	B3|SINE|B2	64308.0	NM_001033281	225518.0	Mm.297645	NM_001033281	ENSMUSG00000069378	Prdm6	Gm92|PRISM	PR domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-14038788-2	chr13	14038288	14039288	+	885.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178337, intron 1 of 16)	Lx|LINE|L1	850.0	NR_130788	70430.0	Mm.260209	NM_178337	ENSMUSG00000039233	Tbce	2610206D02Rik|C530005D02Rik|pmn	tubulin-specific chaperone E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34596002-4	chr18	34595493	34596493	+	885.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177773, exon 1 of 6)	exon (NM_177773, exon 1 of 6)	1475.0	NM_177773	271508.0	Mm.417609	NM_177773	ENSMUSG00000049357	4933408B17Rik	-	RIKEN cDNA 4933408B17 gene	protein-coding	7.0	1.5	0.0	0.0	0.0	1.0
Merged-chr8-91312523-4	chr8	91312059	91313059	+	885.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011936)	promoter-TSS (NM_011936)	663.0	NM_173431	244585.0	Mm.324592	NM_173431	ENSMUSG00000033282	Rpgrip1l	1700047E16Rik|4931437C01|Ftm|Nphp8	Rpgrip1-like	protein-coding	13.5	52.0	16.0	0.0	26.0	9.0
Merged-chr15-98633042-2	chr15	98632551	98633551	+	885.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356543, intron 1 of 12)	intron (NM_001356543, intron 1 of 12)	723.0	NM_001356543	12297.0	Mm.3544	NM_007581	ENSMUSG00000003352	Cacnb3	Beta3|CAB3|Ca(v)beta3|Cchb3	calcium channel, voltage-dependent, beta 3 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6215960-4	chr17	6215486	6216486	+	885.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001103181, intron 8 of 13)	intron (NM_001103181, intron 8 of 13)	-40874.0	NM_001357884	77106.0	Mm.381893	NM_001033178	ENSMUSG00000038141	Tmem181a	5930418K15Rik|C76977|Gpr178|Tmem181|mKIAA1423	transmembrane protein 181A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66087679-2	chr9	66087179	66088179	+	885.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019727)	TTS (NM_019727)	-17948.0	NM_001025612	382083.0	Mm.477103	NM_001025612	ENSMUSG00000039452	Snx22	Gm1120	sorting nexin 22	protein-coding	0.0	6.5	1.5	0.0	6.5	1.5
Merged-chr9-40766978-2	chr9	40766501	40767501	+	885.5	f0_balb.idr|f1_balb.idr	intron (NM_133733, intron 2 of 6)	LTR37A|LTR|ERV1	-34272.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	14.5	55.0	15.0	20.0	14.5	20.0
Merged-chr2-162943384-2	chr2	162942907	162943907	+	885.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081338)	promoter-TSS (NM_001081338)	-58.0	NM_001081338	241764.0	Mm.187086	NM_001081338	ENSMUSG00000035576	L3mbtl1	C630004G01|L3mbtl|mKIAA0681	L3MBTL1 histone methyl-lysine binding protein	protein-coding	0.0	0.0	3.0	0.0	0.0	1.0
Merged-chr14-73303347-2	chr14	73302847	73303847	+	885.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 2 of 26)	intron (NM_009029, intron 2 of 26)	22475.0	NM_009029	19645.0	Mm.273862	NM_009029	ENSMUSG00000022105	Rb1	Rb|Rb-1|pRb|pp105	RB transcriptional corepressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-28424553-4	chr4	28424033	28425033	+	885.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-388598.0	NM_001290434	13841.0	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77980426-4	chr11	77979931	77980931	+	885.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2385.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-32783245-4	chr14	32782745	32783745	+	885.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2718.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132885178-2	chr4	132884678	132885678	+	885.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133887)	promoter-TSS (NM_133887)	-720.0	NM_133887	100226.0	Mm.28237	NM_133887	ENSMUSG00000028879	Stx12	AI850350|AU041521|Stx13	syntaxin 12	protein-coding	0.0	27.5	5.0	11.5	25.5	23.0
Merged-chr9-44241422-2	chr9	44240882	44241882	+	885.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360344, intron 2 of 6)	intron (NM_001360344, intron 2 of 6)	705.0	NM_001081369	270150.0	Mm.347681	NM_001081369	ENSMUSG00000070306	Ccdc153	-	coiled-coil domain containing 153	protein-coding	0.5	1.5	0.0	0.0	0.0	0.5
Merged-chr2-120129983-2	chr2	120129483	120130483	+	885.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 2 of 5)	intron (NM_133838, intron 2 of 5)	24592.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	19.5	3.5	9.0	2.0	4.5	12.0
Merged-chr5-18043206-4	chr5	18042692	18043692	+	885.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80622.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5805627-2	chr13	5805127	5806127	+	885.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52465.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-58497382-2	chr10	58496882	58497882	+	885.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162956)	promoter-TSS (NM_001162956)	-555.0	NM_001162956	76138.0	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120718746-2	chr8	120718246	120719246	+	885.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-17612.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69965614-2	chr11	69965114	69966114	+	885.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_016887, exon 1 of 4)	5' UTR (NM_016887, exon 1 of 4)	193.0	NM_016887	53624.0	Mm.281896	NM_016887	ENSMUSG00000018569	Cldn7	-	claudin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164726140-2	chr2	164725640	164726640	+	885.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10835.0	NM_001040055	641368.0	Mm.422380	NM_001040055	ENSMUSG00000074593	Spint5	Gm14316	serine protease inhibitor, Kunitz type 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80711872-4	chr15	80711295	80712295	+	885.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144812, intron 1 of 24)	CpG	482.0	NM_144812	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85570028-4	chr12	85569560	85570560	+	885.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29045.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-154269986-4	chr3	154269484	154270484	+	885.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081263, exon 22 of 22)	exon (NM_001081263, exon 22 of 22)	60576.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80919115-4	chr7	80918605	80919605	+	885.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019951, intron 4 of 5)	intron (NM_019951, intron 4 of 5)	-14043.0	NM_001291280	68039.0	Mm.22246	NM_026523	ENSMUSG00000025723	Nmb	3110023K12Rik	neuromedin B	protein-coding	7.0	19.5	9.5	10.0	26.5	6.5
Merged-chr17-83253286-4	chr17	83252799	83253799	+	885.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38016.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-58282722-4	chr2	58282213	58283213	+	885.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033369, intron 5 of 7)	intron (NM_001033369, intron 5 of 7)	5934.0	NR_040365	100502932.0	Mm.417207	NR_040365	ENSMUSG00000086995	Gm13544	-	predicted gene 13544	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19701206-4	chr7	19700705	19701705	+	885.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_016871)	TTS (NM_016871)	-2017.0	NM_009696	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65512916-9	chr18	65512583	65513583	+	885.4074099999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	-67147.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	6.0	6.0	7.0	0.0	12.0	11.5
Merged-chr4-149306926-5	chr4	149306500	149307500	+	885.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008441, intron 1 of 20)	intron (NM_008441, intron 1 of 20)	698.0	NM_207682	16561.0	Mm.402393	NM_008441	ENSMUSG00000063077	Kif1b	A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204	kinesin family member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8800116-2	chr17	8799616	8800616	+	885.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290707, intron 2 of 22)	intron (NM_001290707, intron 2 of 22)	-1629.0	NM_011866	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.0	0.0	0.0	3.5	1.5	0.0
Merged-chr15-64222817-4	chr15	64222314	64223314	+	885.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	89859.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	3.5	6.0	2.5	4.5	3.5	22.0
Merged-chr2-158129557-2	chr2	158129057	158130057	+	885.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 6 of 12)	intron (NM_009373, intron 6 of 12)	16835.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75065989-2	chr8	75065489	75066489	+	885.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136259, intron 13 of 15)	intron (NM_001136259, intron 13 of 15)	-27629.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	3.0	0.0	1.0	1.0	0.0	6.5
Merged-chr15-89149677-4	chr15	89149161	89150161	+	885.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011161)	promoter-TSS (NM_011161)	-55.0	NM_011161	19094.0	Mm.91969	NM_011161	ENSMUSG00000053137	Mapk11	P38b|Prkm11|Sapk2|Sapk2b|p38-2|p38beta|p38beta2	mitogen-activated protein kinase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21941749-4	chr14	21941251	21942251	+	885.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	47850.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59486301-4	chr15	59485802	59486802	+	885.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	112104.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	14.5	22.0	11.0	1.0	5.0	8.0
Merged-chr12-25242569-4	chr12	25242072	25243072	+	885.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	113398.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	15.0	14.0	6.5	1.5	5.0	8.5
Merged-chr11-94077492-2	chr11	94076999	94077999	+	885.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025430, intron 5 of 25)	intron (NM_001025430, intron 5 of 25)	33294.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	1.0	6.0	6.0	2.5	2.0	3.0
Merged-chr11-49985700-2	chr11	49985200	49986200	+	885.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-39631.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16256689-2	chr7	16256189	16257189	+	885.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001173550, intron 1 of 1)	intron (NM_001173550, intron 1 of 1)	2649.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	14.0	57.0	42.5	18.0	60.0	32.5
Merged-chr3-27226978-4	chr3	27226468	27227468	+	885.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 3 of 4)	intron (NM_178772, intron 3 of 4)	43964.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21425460-3	chr9	21425015	21426015	+	885.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 1 of 19)	intron (NM_001357721, intron 1 of 19)	607.0	NM_001357719	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3720573-3	chr4	3720143	3721143	+	885.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	5679.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	84.5	105.0	63.5	57.5	85.0	76.5
Merged-chr9-66295133-3	chr9	66294633	66295633	+	885.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55317.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84345576-3	chr3	84345081	84346081	+	885.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34340.0	NR_040752	75309.0	Mm.159497	NR_040752	ENSMUSG00000104004	4930565D16Rik	-	RIKEN cDNA 4930565D16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-129063503-3	chr5	129063031	129064031	+	885.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33219.0	NM_001081342	243277.0	Mm.440501	NM_177734	ENSMUSG00000044017	Adgrd1	E230012M21Rik|Gpr133	adhesion G protein-coupled receptor D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31419431-3	chr14	31418919	31419919	+	885.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	-1742.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-123606270-3	chr1	123605772	123606772	+	885.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199021, intron 5 of 25)	intron (NM_199021, intron 5 of 25)	439287.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	6.5	1.5	9.5	8.0	11.5	12.5
Merged-chr13-95324386-3	chr13	95323885	95324885	+	885.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028106)	promoter-TSS (NM_028106)	-440.0	NM_028106	72114.0	Mm.3774	NM_028106	ENSMUSG00000041995	Zbed3	0610037K01Rik|2610005H11Rik|AU018975|AU024588	zinc finger, BED type containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27667609-3	chr3	27667100	27668100	+	885.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173182, intron 1 of 25)	intron (NM_173182, intron 1 of 25)	42852.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-28929058-4	chr16	28928579	28929579	+	885.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177718, intron 1 of 1)	CpG	619.0	NM_177718	239796.0	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141363372-3	chr4	141362898	141363898	+	885.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4794.0	NM_001085513	277743.0	Mm.294614	NM_001085513	ENSMUSG00000006218	Fam131c	Gm693	family with sequence similarity 131, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44469852-4	chr13	44469263	44470263	+	885.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30036.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	1.0	7.5	33.5	0.0	2.5	1.5
Merged-chr10-98775513-4	chr10	98775015	98776015	+	885.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139127.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9027456-4	chr13	9026957	9027957	+	885.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31445.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4170405-4	chr18	4169909	4170909	+	885.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026092, intron 3 of 4)	intron (NM_026092, intron 3 of 4)	4577.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115823980-4	chr6	115823483	115824483	+	885.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110506, intron 1 of 8)	intron (NM_001110506, intron 1 of 8)	14429.0	NM_001110506	212516.0	Mm.333333	NM_198603	ENSMUSG00000030321	Efcab12	BB124106	EF-hand calcium binding domain 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79142202-4	chr11	79141716	79142716	+	885.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	4257.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145884794-7	chr2	145884185	145885185	+	885.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 12 of 12)	intron (NM_028724, intron 12 of 12)	-18556.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	15.5	29.5	46.0	27.0	35.0	38.5
Merged-chr11-68472668-4	chr11	68472185	68473185	+	885.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	-30334.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-38025076-4	chr7	38024592	38025592	+	885.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	-5540.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	20.0	9.5	5.0	47.5	46.5	82.5
Merged-chr2-30845543-2	chr2	30845028	30846028	+	885.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_009116, exon 1 of 4)	exon (NM_009116, exon 1 of 4)	161.0	NM_009116	20204.0	Mm.1802	NM_009116	ENSMUSG00000039476	Prrx2	Prx2|S8	paired related homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118227151-2	chr11	118226682	118227682	+	885.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-14440.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9138637-2	chr4	9138137	9139137	+	885.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130656.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141621448-2	chr7	141620948	141621948	+	885.25	f1_balb.idr|f1_c57bl6.idr	TTS (NR_106030)	TTS (NR_106030)	747.0	NR_106030	102466798.0		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92862832-2	chr16	92862307	92863307	+	885.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-36733.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109691857-4	chr8	109691351	109692351	+	885.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155034, intron 1 of 10)	RSINE1|SINE|B4	1443.0	NR_155034	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29736204-4	chr6	29735675	29736675	+	885.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_176996, exon 1 of 12)	exon (NM_176996, exon 1 of 12)	678.0	NM_176996	319757.0	Mm.29279	NM_176996	ENSMUSG00000001761	Smo	E130215L21Rik|Smoh|bnb|smoothened	smoothened, frizzled class receptor	protein-coding	0.0	8.5	11.5	1.0	0.5	4.5
Merged-chr12-108689851-2	chr12	108689351	108690351	+	885.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027299)	TTS (NM_027299)	12455.0	NM_001171002	70059.0	Mm.207605	NM_027299	ENSMUSG00000021263	Degs2	2210008A03Rik|AI852933|DES2	delta(4)-desaturase, sphingolipid 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86648623-1	chr4	86648123	86649123	+	885.25	f0_balb.idr	Intergenic	Intergenic	21436.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	0.0	6.5	0.0	0.0	5.0	0.0
Merged-chr2-32963023-2	chr2	32962503	32963503	+	885.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002898)	promoter-TSS (NR_002898)	-298.0	NR_002898	104367.0	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-92490069-3	chr9	92489573	92490573	+	885.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178711, exon 8 of 9)	exon (NM_178711, exon 8 of 9)	32695.0	NM_178711	235527.0	Mm.55289	NM_178711	ENSMUSG00000032377	Plscr4	AV245873	phospholipid scramblase 4	protein-coding	0.0	2.5	7.0	0.0	1.0	3.0
Merged-chr6-113837488-3	chr6	113836990	113837990	+	885.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001036684, intron 2 of 19)	MIRb|SINE|MIR	54049.0	NM_001036684	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46899286-3	chr8	46898783	46899783	+	885.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-87604.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-55056237-3	chr6	55055725	55056725	+	885.211121	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_180678, intron 7 of 16)	MER3|DNA|hAT-Charlie	18224.0	NM_180678	353172.0	Mm.250004	NM_180678	ENSMUSG00000029777	Gars	GENA202|Gena201|Nmf249|Sgrp23	glycyl-tRNA synthetase	protein-coding	18.5	41.5	59.0	0.5	4.0	9.5
Merged-chr6-87531722-4	chr6	87531238	87532238	+	885.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	1521.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90217670-2	chr7	90217170	90218170	+	885.208374	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAAA)n|Simple_repeat|Simple_repeat	47762.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	6.0	0.0	3.5	5.5	3.0	5.5
Merged-chr18-38380339-4	chr18	38379852	38380852	+	885.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38555.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3719627-3	chr2	3719140	3720140	+	885.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025626, intron 1 of 3)	L1_Mus3|LINE|L1	6182.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-60097684-4	chr1	60097125	60098125	+	885.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139150)	promoter-TSS (NM_139150)	282.0	NM_021312	57750.0	Mm.281079	NM_021312	ENSMUSG00000026019	Wdr12	4933402C23Rik|Ytm1|Ytm1p	WD repeat domain 12	protein-coding	20.0	29.5	23.0	16.0	54.0	24.0
Merged-chr3-21986385-4	chr3	21985890	21986890	+	885.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90262.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-46129892-4	chr14	46129332	46130332	+	885.1875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45805.0	NR_002875	218963.0	Mm.282093	NR_002875		Gm1821	-	ubiquitin pseudogene	pseudo	0.0	5.0	3.5	11.0	25.5	17.5
Merged-chr2-126496464-4	chr2	126495950	126496950	+	885.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 1 of 27)	intron (NM_001359975, intron 1 of 27)	3397.0	NM_001359975	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	24.0	45.5	14.0	15.0	27.5	7.0
Merged-chr2-72369494-4	chr2	72368978	72369978	+	885.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 5 of 19)	intron (NM_023057, intron 5 of 19)	83777.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121389915-3	chr5	121389407	121390407	+	885.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4292.0	NM_172275	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	41.5	147.5	96.5	36.0	95.0	72.5
Merged-chr7-45052479-2	chr7	45051979	45052979	+	885.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_175022, intron 1 of 13)	intron (NM_175022, intron 1 of 13)	402.0	NM_175022	233210.0	Mm.219137	NM_175022	ENSMUSG00000046574	Prr12	6720469B10|BC058674	proline rich 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23721002-4	chr13	23720492	23721492	+	885.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_1B-I_MM-int|LTR|ERVK	-10138.0	NM_010424	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	8.0	18.0	18.0	8.0	16.5	19.5
Merged-chr2-167889201-2	chr2	167888701	167889701	+	885.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43126.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-55706978-3	chr7	55706482	55707482	+	885.144409	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61202.0	NM_001310740	233274.0	Mm.44425	NM_178706	ENSMUSG00000051504	Siglech	6430529G09Rik|Siglec-H	sialic acid binding Ig-like lectin H	protein-coding	0.0	2.5	4.5	0.0	0.5	3.0
Merged-chr19-47441732-4	chr19	47441223	47442223	+	885.1333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	22688.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	34.5	26.0	47.5	13.0	35.5	11.5
Merged-chr1-88262233-4	chr1	88261472	88262472	+	885.126587	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_198652, exon 8 of 8)	3' UTR (NM_198652, exon 8 of 8)	7436.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100191037-4	chr7	100190524	100191524	+	885.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12341.0	NM_001190871	57442.0	Mm.282386	NM_020574	ENSMUSG00000035165	Kcne3	2210017H05Rik|MiRP2	potassium voltage-gated channel, Isk-related subfamily, gene 3	protein-coding	0.0	6.0	0.5	2.0	3.5	5.0
Merged-chr2-102823585-4	chr2	102823087	102824087	+	885.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 12 of 13)	intron (NM_001039150, intron 12 of 13)	-76827.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	9.5	31.5	15.5	13.0	28.0	29.0
Merged-chr7-101092846-4	chr7	101092306	101093306	+	885.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15969.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	3.5	5.0	12.5	4.0	21.5	35.5
Merged-chr16-31929896-2	chr16	31929396	31930396	+	885.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-3955.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136016036-3	chr4	136015545	136016545	+	885.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013736, intron 1 of 10)	intron (NM_013736, intron 1 of 10)	5604.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	5.0	10.5	5.5	6.5	14.0	5.5
Merged-chr15-6708882-3	chr15	6708386	6709386	+	885.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030168, intron 2 of 37)	CpG-4767	505.0	NM_030168	78757.0	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89580042-3	chr6	89579539	89580539	+	885.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 1 of 6)	intron (NM_001167736, intron 1 of 6)	15613.0	NM_025351	66098.0	Mm.20313	NM_025351	ENSMUSG00000030086	Chchd6	0710001P09Rik|1700021B03Rik	coiled-coil-helix-coiled-coil-helix domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-55563920-4	chr15	55563424	55564424	+	885.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168250, intron 4 of 16)	intron (NM_001168250, intron 4 of 16)	6516.0	NM_001168250	105837.0	Mm.390829	NM_134092	ENSMUSG00000022369	Mtbp	AI429604|MDM2BP	Mdm2, transformed 3T3 cell double minute p53 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-36532167-4	chr3	36531682	36532682	+	885.087524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10737.0	NR_040411	100503068.0	Mm.389423	NR_040411	ENSMUSG00000085007	Gm11549	-	predicted gene 11549	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148558543-4	chr2	148558057	148559057	+	885.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114058.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90036360-2	chr3	90035860	90036860	+	885.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001165987, intron 6 of 24)	B3|SINE|B2	-15276.0	NM_001287087	99650.0	Mm.300083	NM_025762	ENSMUSG00000027942	4933434E20Rik	5730552F22Rik|AI462154|NICE-3|NS5ATP4	RIKEN cDNA 4933434E20 gene	protein-coding	0.0	2.5	0.0	0.0	2.5	0.0
Merged-chr16-24932872-2	chr16	24932372	24933372	+	885.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-126767.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8545979-4	chr11	8545478	8546478	+	885.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 7 of 30)	intron (NM_001083587, intron 7 of 30)	118557.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	18.5	5.0	0.0	14.0	16.0
Merged-chr3-144453855-4	chr3	144453343	144454343	+	885.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355234, intron 3 of 6)	intron (NM_001355234, intron 3 of 6)	116373.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14231061-3	chr2	14230535	14231535	+	885.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 1 of 29)	intron (NM_008625, intron 1 of 29)	1621.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-115733356-4	chr9	115732878	115733878	+	885.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-176077.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	0.0	9.5	1.5	0.0	0.0	0.5
Merged-chr10-14020459-3	chr10	14019943	14020943	+	885.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	54064.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.0	3.5	0.5	7.5	0.0	3.5
Merged-chr17-5150894-3	chr17	5150395	5151395	+	885.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	155821.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69031214-3	chr11	69030742	69031742	+	885.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281464, intron 14 of 22)	intron (NM_001281464, intron 14 of 22)	-14395.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-3355058-3	chr6	3354565	3355565	+	885.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	44506.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr8-106138270-4	chr8	106137768	106138768	+	885.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040344, exon 5 of 5)	non-coding (NR_040344, exon 5 of 5)	-1294.0	NM_176838	77411.0	Mm.183003	NM_176838	ENSMUSG00000084128	Esrp2	9530027K23Rik|Rbm35b	epithelial splicing regulatory protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-128733996-3	chr5	128733518	128734518	+	885.022217	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2228.0	NM_021311	57749.0	Mm.272720	NM_021311	ENSMUSG00000029423	Piwil1	MIWI	piwi-like RNA-mediated gene silencing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38597629-2	chr6	38597129	38598129	+	885.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170848, intron 7 of 8)	B2_Mm2|SINE|B2	39610.0	NM_001033171	74253.0	Mm.121859	NM_001033171	ENSMUSG00000071537	Klrg2	2310020F24Rik	killer cell lectin-like receptor subfamily G, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-56258103-3	chr9	56257627	56258627	+	885.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172924, exon 4 of 7)	exon (NM_172924, exon 4 of 7)	-97057.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-36689629-2	chr3	36689129	36690129	+	885.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019510, intron 1 of 11)	CpG	538.0	NM_019510	22065.0	Mm.74363	NM_019510	ENSMUSG00000027716	Trpc3	Mwk|Trcp3|Trp3|Trrp3	transient receptor potential cation channel, subfamily C, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50208895-2	chr11	50208395	50209395	+	885.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290769, intron 1 of 7)	B3A|SINE|B2	1925.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136684282-2	chr6	136683755	136684755	+	885.0	f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-22362.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	76.5	156.5	126.0	12.5	27.0	10.0
Merged-chr17-73928962-2	chr17	73928462	73929462	+	885.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 6 of 35)	(TTTTTG)n|Simple_repeat|Simple_repeat	21234.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142434733-1	chr7	142434233	142435233	+	885.0	f1_c57bl6.idr	promoter-TSS (NM_001285858)	promoter-TSS (NM_001285858)	-117.0	NR_153437	55925.0	Mm.213002	NM_018802	ENSMUSG00000031098	Syt8	-	synaptotagmin VIII	protein-coding	3.0	0.0	0.5	5.0	3.0	0.0
Merged-chr10-57755409-3	chr10	57754905	57755905	+	885.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29518.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35030303-1	chr17	35029803	35030803	+	885.0	f1_balb.idr	intron (NM_013600, intron 19 of 23)	intron (NM_013600, intron 19 of 23)	-2287.0	NM_023893	78376.0	Mm.390966	NM_023893	ENSMUSG00000036185	Sapcd1	2810436B06Rik|G7d|Ng23	suppressor APC domain containing 1	protein-coding	0.0	5.0	2.0	1.5	3.0	0.0
Merged-chr1-170535447-1	chr1	170534947	170535947	+	885.0	f0_balb.idr	intron (NM_001109985, intron 1 of 9)	intron (NM_001109985, intron 1 of 9)	21663.0	NM_027528	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	8.0	0.0	0.0	0.0	1.0	0.5
Merged-chr16-11133643-3	chr16	11133128	11134128	+	885.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029582, intron 1 of 11)	L2a|LINE|L2	904.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46602852-2	chr19	46602361	46603361	+	885.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146099, intron 1 of 3)	intron (NM_146099, intron 1 of 3)	3755.0	NM_146099	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	6.0	8.0	6.5	11.5	20.0	7.5
Merged-chr17-56710676-2	chr17	56710176	56711176	+	885.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027933, exon 15 of 16)	exon (NM_027933, exon 15 of 16)	6245.0	NM_178926	106639.0	Mm.37290	NM_178926	ENSMUSG00000054723	Vmac	AI662250	vimentin-type intermediate filament associated coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25384996-2	chr15	25384496	25385496	+	885.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	28768.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73641023-2	chr15	73640523	73641523	+	885.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16279.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64875919-3	chr1	64875426	64876426	+	885.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 5 of 7)	L2a|LINE|L2	80898.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-94274126-1	chr6	94273626	94274626	+	885.0	f0_balb.idr	intron (NM_001029850, intron 1 of 23)	intron (NM_001029850, intron 1 of 23)	9791.0	NM_010367	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-24495664-2	chr18	24495164	24496164	+	885.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360807, intron 6 of 7)	intron (NM_001360807, intron 6 of 7)	24793.0	NM_026529	68046.0	Mm.276574	NM_026529	ENSMUSG00000024273	2700062C07Rik	AI195775|C87515	RIKEN cDNA 2700062C07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75536144-2	chr11	75535644	75536644	+	885.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 2 of 13)	intron (NM_001199284, intron 2 of 13)	4032.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19177611-2	chr10	19177111	19178111	+	885.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038022, intron 1 of 1)	LTR101_Mam|LTR|ERVL	10373.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr5-64267487-1	chr5	64266987	64267987	+	885.0	f0_balb.idr	intron (NM_001289514, intron 5 of 18)	intron (NM_001289514, intron 5 of 18)	37130.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	1.5	1.5	0.0	0.0	0.5	9.0
Merged-chr10-82973767-3	chr10	82973268	82974268	+	885.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-11729.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	0.0	1.0	0.0	0.0	3.0	14.0
Merged-chr1-66895362-2	chr1	66894862	66895862	+	885.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32053.0	NM_007381	11363.0	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81082329-4	chr10	81081810	81082810	+	885.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_022653)	TTS (NM_022653)	12227.0	NM_022653	50492.0	Mm.26995	NM_022653	ENSMUSG00000004929	Thop1	AI131655|AI327041|EP24.15	thimet oligopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24830933-2	chr13	24830433	24831433	+	885.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019551)	promoter-TSS (NM_019551)	556.0	NM_025790	66834.0	Mm.2125	NM_025790	ENSMUSG00000006717	Acot13	0610006O17Rik|Them2	acyl-CoA thioesterase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-195232795-3	chr1	195232297	195233297	+	885.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56082.0	NM_007758	12902.0	Mm.235387	NM_007758	ENSMUSG00000026616	Cr2	C3DR|CD21|CD35|Cr-1|Cr-2|Cr1	complement receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114927955-2	chr5	114927454	114928454	+	885.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359946, intron 1 of 4)	intron (NM_001359946, intron 1 of 4)	4714.0	NM_001359945	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	20.0	65.0	20.0	19.0	84.0	57.0
Merged-chr16-16575191-2	chr16	16574691	16575691	+	885.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	-14972.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146913252-3	chr6	146912717	146913717	+	885.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355728, intron 1 of 30)	intron (NM_001355728, intron 1 of 30)	24723.0	NM_026221	67533.0	Mm.103382	NM_026221	ENSMUSG00000016487	Ppfibp1	4632409B19Rik|AW214454|AW261454	PTPRF interacting protein, binding protein 1 (liprin beta 1)	protein-coding	3.5	0.0	6.0	0.5	0.5	0.5
Merged-chr4-150462610-2	chr4	150462110	150463110	+	885.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 4 of 22)	intron (NM_001085492, intron 4 of 22)	180694.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	2.5	8.0	9.0	0.5	7.0	0.0
Merged-chr2-150920779-2	chr2	150920279	150921279	+	885.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027014, intron 4 of 6)	B3|SINE|B2	11185.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43819658-1	chr5	43819158	43820158	+	885.0	f1_balb.idr	intron (NM_009763, intron 1 of 8)	intron (NM_009763, intron 1 of 8)	765.0	NM_009763	12182.0	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	0.0	1.0	1.5	0.0	5.0	8.0
Merged-chr13-97203298-3	chr13	97202803	97203803	+	885.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-4946.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127094188-2	chr10	127093688	127094688	+	885.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001171026)	TTS (NM_001171026)	15281.0	NM_001033263	216439.0	Mm.336761	NM_001033263	ENSMUSG00000025422	Agap2	AGAP-2|Centg1|PIKE|cnt-g1|mKIAA0167	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69030809-2	chr11	69030309	69031309	+	885.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001013256, exon 13 of 23)	exon (NM_001013256, exon 13 of 23)	-14828.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91354341-3	chr16	91353846	91354846	+	885.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-18437.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46580921-3	chr4	46580393	46581393	+	885.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 1 of 11)	MMTV-int|LTR|ERVK	-14453.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127605801-1	chr10	127605301	127606301	+	885.0	f1_c57bl6.idr	exon (NM_008512, exon 5 of 89)	exon (NM_008512, exon 5 of 89)	15347.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	70.5	149.0	80.0	49.0	159.0	147.5
Merged-chr4-102227023-2	chr4	102226523	102227523	+	885.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27719.0	NM_001177983	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	2.5	0.5	1.5	2.0	0.0	0.0
Merged-chr17-64604254-2	chr17	64603754	64604754	+	885.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	2605.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36086775-3	chr1	36086291	36087291	+	885.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	ORR1B1|LTR|ERVL-MaLR	18391.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107595843-2	chr3	107595343	107596343	+	885.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007441, intron 1 of 3)	CpG	812.0	NM_007441	11694.0	Mm.10112	NM_007441	ENSMUSG00000014603	Alx3	-	aristaless-like homeobox 3	protein-coding	0.0	7.0	2.0	0.0	0.0	0.0
Merged-chr10-127575332-2	chr10	127574803	127575803	+	885.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008512, exon 25 of 89)	exon (NM_008512, exon 25 of 89)	-40744.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	1.0	6.5	13.5	0.0	0.0	2.5
Merged-chr1-138543687-3	chr1	138543184	138544184	+	885.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 3 of 9)	RLTR11B|LTR|ERVK	76073.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30864087-3	chr5	30863591	30864591	+	885.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133350, intron 4 of 6)	intron (NM_133350, intron 4 of 6)	2284.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80432975-2	chr10	80432475	80433475	+	885.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164153, intron 1 of 18)	intron (NM_001164153, intron 1 of 18)	678.0	NM_001164150	21423.0	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84339812-2	chr10	84339312	84340312	+	885.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100659.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46754388-3	chr17	46753876	46754876	+	885.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-2162.0	NM_001305988	72029.0	Mm.240325	NM_028065	ENSMUSG00000023973	Cnpy3	1600025D17Rik|2410050O22Rik|AI413153|CAG4A|ERDA5|PRAT4A|Tnrc5	canopy FGF signaling regulator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103063095-3	chr2	103062594	103063594	+	885.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175094, intron 1 of 10)	intron (NM_175094, intron 1 of 10)	10419.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-10972193-1	chr2	10971693	10972693	+	885.0	f0_balb.idr	Intergenic	L1MEi|LINE|L1	-200189.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77920343-1	chr9	77919843	77920843	+	885.0	f1_c57bl6.idr	intron (NM_134255, intron 1 of 7)	ID_B1|SINE|B4	2978.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.0	6.0	0.0	2.5	12.0	16.0
Merged-chr5-45497216-2	chr5	45496670	45497670	+	885.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024434, intron 3 of 12)	intron (NM_024434, intron 3 of 12)	3796.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45249188-2	chr9	45248688	45249688	+	885.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001198971, exon 5 of 5)	3' UTR (NM_001198971, exon 5 of 5)	17519.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184729961-4	chr1	184729458	184730458	+	884.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008250, exon 3 of 4)	exon (NM_008250, exon 3 of 4)	2535.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-90829703-3	chr8	90829266	90830266	+	884.9722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 1 of 39)	intron (NM_177224, intron 1 of 39)	931.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	8.5	19.0	13.5	13.5	3.0	5.5
Merged-chr7-16294400-3	chr7	16293870	16294870	+	884.9714359999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-7575.0	NM_001136471	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	9.5	17.0	19.5	10.5	15.5	17.0
Merged-chr7-16057314-4	chr7	16056797	16057797	+	884.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-14548.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	13.5	14.5	4.5	2.5	1.0	0.5
Merged-chr5-7960323-4	chr5	7959824	7960824	+	884.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054098)	promoter-TSS (NM_054098)	-148.0	NM_054098	117167.0	Mm.31403	NM_054098	ENSMUSG00000012428	Steap4	1110021O17Rik|AI481214|Tiarp|Tnfaip9	STEAP family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145025571-4	chr7	145025058	145026058	+	884.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GC_rich|Low_complexity|Low_complexity	-85633.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	3.5	1.0	0.5	0.0	0.0	0.0
Merged-chr1-95449411-3	chr1	95448901	95449901	+	884.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	135773.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43919946-3	chr13	43919445	43920445	+	884.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	134833.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83221915-3	chr15	83221430	83222430	+	884.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29801.0	NM_001170954	239559.0	Mm.323805	NM_001004150	ENSMUSG00000047878	A4galt	-	alpha 1,4-galactosyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145106648-3	chr7	145106147	145107147	+	884.922241	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	101472.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	4.0	11.5	7.0	1.5	2.5	1.5
Merged-chr8-103940709-4	chr8	103940210	103941210	+	884.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-160915.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103279120-4	chr3	103278644	103279644	+	884.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053170)	promoter-TSS (NM_053170)	-149.0	NM_001079830	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	11.5	55.5	29.5	17.0	76.0	49.5
Merged-chr15-101138845-4	chr15	101138340	101139340	+	884.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277255, intron 10 of 11)	intron (NM_001277255, intron 10 of 11)	10318.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	20.0	26.5	63.5	37.5	60.5	58.0
Merged-chr2-66170555-3	chr2	66170038	66171038	+	884.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45745.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-105726590-4	chr7	105726094	105727094	+	884.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	9990.0	NM_025897	101867.0	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87634346-4	chr1	87633814	87634814	+	884.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	14002.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-37928040-4	chr18	37927531	37928531	+	884.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305981, intron 1 of 28)	MIR3|SINE|MIR	7445.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100927547-3	chr11	100927059	100928059	+	884.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_213660, intron 1 of 23)	intron (NM_213660, intron 1 of 23)	11981.0	NM_213660	20848.0	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32391596-3	chr18	32391057	32392057	+	884.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 1 of 17)	intron (NM_001360876, intron 1 of 17)	-13273.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0.0	3.0	0.0	0.0	0.0	0.0
Merged-chr11-68520086-6	chr11	68519661	68520661	+	884.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004435, intron 1 of 19)	intron (NM_001004435, intron 1 of 19)	17142.0	NR_126154	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102806134-3	chr14	102805647	102806647	+	884.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	5S|rRNA|rRNA	176485.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-137415010-3	chr7	137414516	137415516	+	884.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-4260.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-65108781-3	chr15	65108274	65109274	+	884.8833619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-186478.0	NM_009623	11514.0	Mm.1425	NM_009623	ENSMUSG00000022376	Adcy8	AC8|AW060868	adenylate cyclase 8	protein-coding	0.0	1.5	0.0	1.0	0.5	1.0
Merged-chr7-35137725-4	chr7	35137203	35138203	+	884.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	18410.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-116275727-4	chr8	116275240	116276240	+	884.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-229275.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96499760-4	chr3	96499298	96500298	+	884.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25387.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	13.5	68.0	42.0	5.5	14.0	15.5
Merged-chr2-84626547-4	chr2	84626049	84627049	+	884.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007615, intron 1 of 19)	intron (NM_007615, intron 1 of 19)	22931.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36049901-2	chr16	36049401	36050401	+	884.875	f1_balb.idr|f1_c57bl6.idr	exon (NM_027342, exon 3 of 5)	exon (NM_027342, exon 3 of 5)	8711.0	NM_027113	69544.0	Mm.37802	NM_027113	ENSMUSG00000034379	Wdr5b	2310009C03Rik|AI606931	WD repeat domain 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29622672-2	chr2	29622172	29623172	+	884.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	2952.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8158793-5	chr17	8158102	8159102	+	884.8666380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-6916.0	NM_001197046	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-83823962-4	chr3	83823462	83824462	+	884.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	17646.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-46062941-4	chr13	46062446	46063446	+	884.854126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97955.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19147819-2	chr7	19147319	19148319	+	884.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026111, intron 2 of 6)	intron (NM_026111, intron 2 of 6)	1377.0	NM_026111	67369.0	Mm.234876	NM_026111	ENSMUSG00000030407	Qpctl	1810019P04Rik|BB101812|gQC	glutaminyl-peptide cyclotransferase-like	protein-coding	0.0	2.0	5.5	2.0	1.0	0.5
Merged-chr13-41520988-4	chr13	41520495	41521495	+	884.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33635.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	18.5	74.0	38.5	37.5	54.5	48.0
Merged-chr13-43791562-6	chr13	43791145	43792145	+	884.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	6533.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25484437-6	chr9	25483941	25484941	+	884.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	2844.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154141348-3	chr4	154140852	154141852	+	884.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1020.0	NM_021499	59002.0	Mm.46508	NM_021499	ENSMUSG00000029029	Wrap73	2610044M17Rik|5330425N03Rik|Dd57|Wdr8	WD repeat containing, antisense to Trp73	protein-coding	0.0	11.5	4.5	0.0	11.5	5.0
Merged-chr14-55783314-9	chr14	55782752	55783752	+	884.815735	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080435, intron 2 of 25)	intron (NM_080435, intron 2 of 25)	820.0	NM_080435	104110.0	Mm.287010	NM_080435	ENSMUSG00000022220	Adcy4	mKIAA4004	adenylate cyclase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9984708-13	chr19	9984158	9985158	+	884.8012699999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011913)	TTS (NM_011913)	2012.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	16.0	14.5	28.5	12.5	10.0	8.0
Merged-chr7-118490758-4	chr7	118490251	118491251	+	884.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033380, exon 1 of 1)	exon (NM_001033380, exon 1 of 1)	1224.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	71.5	135.0	184.0	68.5	156.5	174.0
Merged-chr11-120577561-2	chr11	120577061	120578061	+	884.7666630000001	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133796, exon 6 of 6)	3' UTR (NM_133796, exon 6 of 6)	4059.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	0.0	4.0	4.0	0.0	6.0	5.5
Merged-chr17-87613559-3	chr17	87613052	87614052	+	884.755554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22427.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0.0	9.5	19.0	1.0	5.0	3.5
Merged-chr7-97172367-4	chr7	97171864	97172864	+	884.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	90613.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	52.0	137.5	102.5	40.5	85.5	74.5
Merged-chr8-54528015-2	chr8	54527515	54528515	+	884.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_029701, intron 2 of 4)	intron (NM_029701, intron 2 of 4)	1983.0	NM_029701	76687.0	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik|SPC22/23	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-3035915-3	chr9	3035437	3036437	+	884.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	2806.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124706279-2	chr2	124705779	124706779	+	884.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52698.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-97814687-3	chr4	97814161	97815161	+	884.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	37035.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79856073-4	chr10	79855559	79856559	+	884.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077363, intron 1 of 13)	intron (NM_001077363, intron 1 of 13)	-1088.0	NR_029447	414101.0	Mm.401339	NR_029447	ENSMUSG00000091994	E130317F20Rik	-	RIKEN cDNA E130317F20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-60511566-3	chr3	60511039	60512039	+	884.7333369999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	10360.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	20.0	40.5	40.0	9.0	11.0	7.5
Merged-chr1-93411116-3	chr1	93410543	93411543	+	884.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357556, intron 24 of 27)	intron (NM_001357556, intron 24 of 27)	34658.0	NM_001301364	110611.0	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	3.5	0.0	1.0	0.5	7.0	6.5
Merged-chr6-128134733-4	chr6	128134230	128135230	+	884.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175414, intron 1 of 8)	intron (NM_175414, intron 1 of 8)	8848.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3387484-4	chr8	3386985	3387985	+	884.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033378, intron 7 of 10)	intron (NM_001033378, intron 7 of 10)	-5523.0	NM_133962	102098.0	Mm.170461	NM_133962	ENSMUSG00000004568	Arhgef18	AI467246|D030053O22Rik	rho/rac guanine nucleotide exchange factor (GEF) 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-56028678-4	chr16	56028214	56029214	+	884.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356449, intron 1 of 5)	intron (NM_001356449, intron 1 of 5)	1003.0	NM_001356449	76302.0	Mm.310642	NM_001024622	ENSMUSG00000071533	Pcnp	1110018D06Rik|AI647035	PEST proteolytic signal containing nuclear protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-66101186-4	chr2	66100678	66101678	+	884.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015736, intron 3 of 10)	intron (NM_015736, intron 3 of 10)	23615.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136661231-11	chr6	136660721	136661721	+	884.7045289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025806, intron 1 of 10)	intron (NM_025806, intron 1 of 10)	672.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	101.5	324.0	246.5	123.5	228.5	199.5
Merged-chr2-167716046-4	chr2	167715527	167716527	+	884.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24850.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53244021-6	chr18	53243630	53244630	+	884.690735	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1532.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	2.0	8.0	1.0	7.0	16.5	2.5
Merged-chr8-108783409-4	chr8	108782922	108783922	+	884.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	68778.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54969246-4	chr12	54968735	54969735	+	884.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013815, intron 3 of 26)	intron (NM_013815, intron 3 of 26)	17101.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	12.5	1.0	3.5	3.0	6.0	3.5
Merged-chr8-56370816-3	chr8	56370312	56371312	+	884.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76260.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76539762-2	chr15	76539262	76540262	+	884.6666869999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_029643, exon 3 of 5)	exon (NM_029643, exon 3 of 5)	819.0	NM_029643	52710.0	Mm.28597	NM_029643	ENSMUSG00000022560	Slc52a2	2010003P03Rik|D15Ertd747e|GPCR42|Gpr172b|PAR2|mRFT1	solute carrier protein 52, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40183081-3	chr4	40182576	40183576	+	884.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007386, intron 12 of 20)	intron (NM_007386, intron 12 of 20)	39811.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24587006-3	chr7	24586502	24587502	+	884.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023154)	promoter-TSS (NM_023154)	-541.0	NM_023154	66071.0	Mm.29553	NM_023154	ENSMUSG00000064254	Ethe1	0610025L15Rik|Hsco	ethylmalonic encephalopathy 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141646807-3	chr4	141646286	141647286	+	884.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	17329.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	138.0	257.0	153.0	34.0	50.0	56.0
Merged-chr5-143509961-3	chr5	143509475	143510475	+	884.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347530, intron 3 of 6)	intron (NM_001347530, intron 3 of 6)	18018.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-65176369-3	chr1	65175825	65176825	+	884.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111320, intron 1 of 8)	RMER15|LTR|ERVL	2817.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103965760-3	chr11	103965280	103966280	+	884.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304574)	promoter-TSS (NM_001304574)	-945.0	NM_001304574	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82764984-3	chr11	82764482	82765482	+	884.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291242)	promoter-TSS (NM_001291242)	637.0	NM_025884	66983.0	Mm.29622	NM_025884	ENSMUSG00000046010	Zfp830	2410003C20Rik|AV301118|AW048207|Ccdc16|Omcg1|Znf830	zinc finger protein 830	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46619057-3	chr19	46618552	46619552	+	884.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177812, intron 2 of 4)	intron (NM_001177812, intron 2 of 4)	-4349.0	NM_001177813	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	4.5	2.0	1.5	1.0	0.0	4.5
Merged-chr1-64052182-4	chr1	64051678	64052678	+	884.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033563, intron 2 of 3)	intron (NM_033563, intron 2 of 3)	-9677.0	NR_105864	102466760.0		NR_105864	ENSMUSG00000098487	Mir6899	Gm27384|mmu-mir-6899	microRNA 6899	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67157104-3	chr17	67156602	67157602	+	884.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 2 of 32)	intron (NM_001357625, intron 2 of 32)	-130867.0	NR_049205	100885844.0		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67260638-3	chr17	67260141	67261141	+	884.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	93818.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	89.0	161.5	77.0	41.0	60.0	63.5
Merged-chr14-122794428-2	chr14	122793928	122794928	+	884.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 21 of 24)	intron (NR_153443, intron 21 of 24)	-118602.0	NR_155287	105245866.0	Mm.390754	NM_001039531	ENSMUSG00000075463	Gm15735	4930594M22Rik|F930011C10Rik	predicted gene 15735	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84465936-2	chr1	84465436	84466436	+	884.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_152915, intron 7 of 12)	intron (NM_152915, intron 7 of 12)	-181291.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28389037-2	chr7	28388537	28389537	+	884.650024	f1_balb.idr|f1_c57bl6.idr	intron (NM_026042, intron 3 of 3)	intron (NM_026042, intron 3 of 3)	3653.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62044896-4	chr15	62044386	62045386	+	884.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	5629.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31138649-4	chr3	31138166	31139166	+	884.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-11254.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75369228-4	chr18	75368729	75369729	+	884.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001042660, exon 1 of 4)	exon (NM_001042660, exon 1 of 4)	1864.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78449307-4	chr15	78448760	78449760	+	884.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355601, intron 10 of 17)	intron (NM_001355601, intron 10 of 17)	19374.0	NM_001355601	71753.0	Mm.34056	NM_027902	ENSMUSG00000016942	Tmprss6	1300008A22Rik	transmembrane serine protease 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88715901-4	chr10	88715407	88716407	+	884.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15194.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-89584842-2	chr10	89584324	89585324	+	884.625	f0_c57.idr|f1_c57bl6.idr	intron (NM_001310710, intron 7 of 9)	intron (NM_001310710, intron 7 of 9)	14991.0	NM_001310710	216227.0	Mm.233921	NM_182959	ENSMUSG00000019935	Slc17a8	BC042593|Vglut3	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8	protein-coding	9.5	21.5	22.5	4.0	11.0	7.5
Merged-chr1-34490328-4	chr1	34489815	34490815	+	884.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR48A|LTR|ERV1	-8097.0	NM_009355	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22631701-4	chr11	22631182	22632182	+	884.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	119399.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38443717-3	chr18	38443209	38444209	+	884.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 2 of 7)	intron (NM_001355749, intron 2 of 7)	24802.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92106887-4	chr1	92106358	92107358	+	884.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207225, intron 2 of 26)	intron (NM_207225, intron 2 of 26)	73483.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157142173-4	chr2	157141672	157142672	+	884.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-6950.0	NM_018851	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56139958-3	chr17	56139447	56140447	+	884.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130456, intron 1 of 16)	CpG	396.0	NM_001130456	20359.0	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84094542-3	chr17	84094031	84095031	+	884.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15871.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	5.5	0.5	6.0	4.5	2.5
Merged-chr6-94163256-5	chr6	94162743	94163743	+	884.5499880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130996, intron 1 of 1)	intron (NR_130996, intron 1 of 1)	74199.0	NR_130996	78178.0	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90747351-4	chr5	90746859	90747859	+	884.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11939.0	NM_009141	20311.0	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	15.5	20.5	5.5	2.5	11.5	6.5
Merged-chr2-30134629-4	chr2	30134136	30135136	+	884.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146252, intron 1 of 11)	intron (NM_146252, intron 1 of 11)	890.0	NM_146252	70296.0	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107856235-4	chr13	107855745	107856745	+	884.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	33819.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	26.0	29.5	26.0	19.5	43.0	37.0
Merged-chr8-71612665-4	chr8	71612264	71613264	+	884.535706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146211, intron 2 of 11)	L2c|LINE|L2	1740.0	NM_146211	234407.0	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	50.0	182.0	140.0	72.0	201.0	125.0
Merged-chr17-50795642-4	chr17	50795143	50796143	+	884.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 17 of 21)	intron (NM_028162, intron 17 of 21)	96962.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	0.0	0.0	0.0	0.0	9.5	1.0
Merged-chr9-107579561-4	chr9	107579043	107580043	+	884.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008317, exon 4 of 4)	3' UTR (NM_008317, exon 4 of 4)	-1126.0	NM_019750	56441.0	Mm.10305	NM_019750	ENSMUSG00000079334	Nat6	AI225910|Fus2	N-acetyltransferase 6	protein-coding	10.0	7.5	7.0	2.0	11.0	9.0
Merged-chr11-97687540-2	chr11	97687040	97688040	+	884.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085500, intron 2 of 2)	intron (NM_001085500, intron 2 of 2)	1588.0	NM_001085500	217149.0	Mm.29659	NM_001085500	ENSMUSG00000078695	Cisd3	Mel-13|Mel13	CDGSH iron sulfur domain 3	protein-coding	2.0	1.5	1.5	2.0	1.0	1.5
Merged-chr1-37719979-3	chr1	37719524	37720524	+	884.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028096)	promoter-TSS (NM_028096)	-213.0	NM_028096	72097.0	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166410142-2	chr2	166409642	166410642	+	884.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-37309.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-71652870-2	chr16	71652370	71653370	+	884.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31B_Mm|LTR|ERVK	402966.0	NR_040576	78221.0	Mm.399298	NR_040576		4930567J20Rik	-	RIKEN cDNA 4930567J20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166781124-2	chr2	166780624	166781624	+	884.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12643.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3629033-4	chr4	3628530	3629530	+	884.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27476.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	3.0	3.0	8.5	4.5	1.5	1.0
Merged-chr11-86107474-2	chr11	86106974	86107974	+	884.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178309, intron 16 of 19)	MLT2B5|LTR|ERVL	-83124.0	NR_046030	629393.0	Mm.372867	NR_046030		Gm20759	-	predicted gene, 20759	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32939843-3	chr19	32939316	32940316	+	884.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	182239.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0.0	0.0	0.0	2.5	0.0	0.0
Merged-chr14-70548427-2	chr14	70547925	70548925	+	884.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_180588, intron 7 of 7)	intron (NM_180588, intron 7 of 7)	3174.0	NM_180588	72549.0	Mm.46742	NM_180588	ENSMUSG00000033589	Reep4	2700029E10Rik	receptor accessory protein 4	protein-coding	0.0	0.0	1.0	0.0	0.0	2.0
Merged-chr5-21220733-3	chr5	21220232	21221232	+	884.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 6 of 26)	intron (NR_153365, intron 6 of 26)	34465.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74454117-4	chr17	74453621	74454621	+	884.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 1 of 8)	RLTR26B_MM|LTR|ERVK	4987.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151228569-4	chr1	151228113	151229113	+	884.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90579.0	NR_038011	402734.0	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90073863-2	chr16	90073363	90074363	+	884.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68374.0	NR_033476	100038709.0	Mm.484070	NR_033476		Gm10789	-	predicted gene 10789	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21586968-3	chr5	21586463	21587463	+	884.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199632, intron 7 of 20)	B3A|SINE|B2	43436.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-42792227-4	chr18	42791735	42792735	+	884.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028392, intron 1 of 8)	intron (NM_028392, intron 1 of 8)	107271.0	NR_073583	72930.0	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-137900450-3	chr1	137899944	137900944	+	884.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66011.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76459440-2	chr11	76458942	76459942	+	884.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 8 of 21)	intron (NM_001346670, intron 8 of 21)	9023.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	27.5	39.0	19.0	32.0	17.5	25.0
Merged-chr18-35251088-2	chr18	35250588	35251588	+	884.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009818, intron 15 of 17)	intron (NM_009818, intron 15 of 17)	-36064.0	NM_178005	107065.0	Mm.39900	NM_178005	ENSMUSG00000071862	Lrrtm2	AI851755|BB129880|C630011A14Rik|mKIAA0416	leucine rich repeat transmembrane neuronal 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-85867854-3	chr15	85867347	85868347	+	884.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013882, intron 5 of 10)	intron (NM_013882, intron 5 of 10)	7901.0	NM_013882	29870.0	Mm.20858	NM_013882	ENSMUSG00000022385	Gtse1	B99|Gtse-1	G two S phase expressed protein 1	protein-coding	1.5	0.0	0.0	2.5	0.0	0.0
Merged-chr3-121293037-2	chr3	121292537	121293537	+	884.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_155539, intron 1 of 2)	intron (NR_155539, intron 1 of 2)	1297.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78164113-4	chr10	78163625	78164625	+	884.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138601, intron 5 of 6)	intron (NM_138601, intron 5 of 6)	5643.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114347170-4	chr7	114346665	114347665	+	884.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_029437, intron 1 of 3)	intron (NR_029437, intron 1 of 3)	67996.0	NR_029437	71045.0	Mm.235682	NR_029437	ENSMUSG00000087475	4933406I18Rik	4933403D24Rik	RIKEN cDNA 4933406I18 gene	ncRNA	1.0	1.0	0.5	1.0	6.5	4.0
Merged-chr15-96700681-2	chr15	96700181	96701181	+	884.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175121)	promoter-TSS (NM_175121)	-953.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83006181-3	chr6	83005693	83006693	+	884.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 6 of 9)	intron (NM_033079, intron 6 of 9)	27278.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	10.0	15.0	10.0	9.5	24.0	28.0
Merged-chr8-108315802-2	chr8	108315302	108316302	+	884.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	268875.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78278583-2	chr15	78278081	78279081	+	884.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6268.0	NR_106137	102465776.0		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	0.0	1.0	0.5	0.0	0.0	0.0
Merged-chr10-22149459-2	chr10	22148973	22149973	+	884.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001254744)	promoter-TSS (NM_001254744)	-203.0	NM_001254745	319887.0	Mm.177746	NM_001254744	ENSMUSG00000097327	E030030I06Rik	-	RIKEN cDNA E030030I06 gene	protein-coding	14.0	35.0	15.5	13.0	21.0	15.0
Merged-chr11-85123629-7	chr11	85123145	85124145	+	884.4761960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029934, intron 1 of 33)	B1_Mur1|SINE|Alu	16310.0	NM_001029934	237898.0	Mm.178524	NM_001029934	ENSMUSG00000000804	Usp32	2900074J03Rik|6430526O11Rik|AW045245	ubiquitin specific peptidase 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52784147-4	chr2	52783637	52784637	+	884.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41988.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-91168346-3	chr10	91167918	91168918	+	884.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080129, intron 1 of 8)	B1_Mus1|SINE|Alu	2132.0	NM_001283048	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46497101-3	chr8	46496611	46497611	+	884.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302163, intron 2 of 20)	intron (NM_001302163, intron 2 of 20)	6145.0	NM_001302163	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-84522803-3	chr11	84522302	84523302	+	884.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008498, intron 1 of 4)	CpG	2732.0	NM_008498	16869.0	Mm.4965	NM_008498	ENSMUSG00000018698	Lhx1	Lim1	LIM homeobox protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25981457-2	chr8	25980930	25981930	+	884.43335	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029037, exon 5 of 5)	3' UTR (NM_029037, exon 5 of 5)	-4686.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	55.0	69.5	48.0	38.5	68.0	56.5
Merged-chr11-117847636-4	chr11	117847143	117848143	+	884.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4A|LTR|ERVK	-1594.0	NM_001012273	11799.0	Mm.8552	NM_009689	ENSMUSG00000017716	Birc5	AAC-11|Api4|TIAP|survivin40	baculoviral IAP repeat-containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63400072-6	chr4	63399540	63400540	+	884.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 1 of 21)	intron (NM_001045514, intron 1 of 21)	-1800.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166715488-2	chr2	166714947	166715947	+	884.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1615.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-28081236-4	chr3	28080747	28081747	+	884.412476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 15 of 25)	intron (NM_008875, intron 15 of 25)	97076.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58092886-6	chr11	58092418	58093418	+	884.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11052.0	NM_026949	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	32.0	45.0	64.0	83.5	156.5	128.0
Merged-chr11-116869416-3	chr11	116868919	116869919	+	884.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178620, intron 10 of 12)	intron (NM_178620, intron 10 of 12)	15419.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	5.5	13.5	18.0	10.0	14.5	15.5
Merged-chr5-30959404-3	chr5	30958903	30959903	+	884.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016703, exon 2 of 9)	exon (NM_016703, exon 2 of 9)	924.0	NM_001294302	50907.0	Mm.272414	NM_016703	ENSMUSG00000045302	Preb	C85705	prolactin regulatory element binding	protein-coding	8.0	35.5	43.5	18.0	12.5	14.5
Merged-chr7-134689633-4	chr7	134689165	134690165	+	884.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033420, intron 1 of 51)	intron (NM_001033420, intron 1 of 51)	18978.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	13.5	44.0	17.0	6.5	37.0	15.5
Merged-chr16-76371336-4	chr16	76370808	76371808	+	884.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	1741.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137599880-2	chr5	137599365	137600365	+	884.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001254762, intron 2 of 4)	intron (NM_001254762, intron 2 of 4)	843.0	NM_001254762	68929.0	Mm.41355	NM_030037	ENSMUSG00000037221	Mospd3	1190005J19Rik|5133401H10Rik|Gtig2|R124	motile sperm domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-167307433-2	chr1	167306933	167307933	+	884.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1237.0	NM_001039483	68944.0	Mm.330045	NM_026881	ENSMUSG00000052428	Tmco1	1190006A08Rik|4930403O06Rik|AA109065|AU022572|ESTM39	transmembrane and coiled-coil domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134558322-3	chr5	134557823	134558823	+	884.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001013751, exon 1 of 1)	exon (NM_001013751, exon 1 of 1)	1848.0	NM_001013751	214292.0	Mm.425290	NM_001013751	ENSMUSG00000085957	Syna	Gm453|Gm52|syncytin-A	syncytin a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40316680-3	chr10	40316190	40317190	+	884.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-14502.0	NM_009665	11702.0	Mm.253533	NM_009665	ENSMUSG00000075232	Amd1	AdoMetDC|Amd-1|SAMDC|SAMDC 1|adoMetDC1	S-adenosylmethionine decarboxylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114874180-3	chr7	114873645	114874645	+	884.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74505.0	NR_040317	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60746476-3	chr13	60746017	60747017	+	884.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 19 of 26)	intron (NM_134062, intron 19 of 26)	39847.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0.0	1.0	0.0	0.0	1.0	0.0
Merged-chr12-54998710-3	chr12	54998215	54999215	+	884.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-12379.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	2.5	15.5	9.0	1.0	10.0	6.0
Merged-chr8-120685348-3	chr8	120684850	120685850	+	884.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17030.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122142530-5	chr5	122142069	122143069	+	884.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4507.0	NM_183307	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31215724-3	chr6	31215246	31216246	+	884.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	intron (NR_110469, intron 1 of 3)	2728.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135883419-3	chr4	135882932	135883932	+	884.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9586.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167798129-4	chr2	167797621	167798621	+	884.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106944.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21205240-1	chr16	21204740	21205740	+	884.3333130000001	f0_balb.idr	exon (NM_010143, exon 1 of 16)	exon (NM_010143, exon 1 of 16)	445.0	NM_010143	13845.0	Mm.6972	NM_010143	ENSMUSG00000005958	Ephb3	AW456895|Cek10|Etk2|HEK2|MDK5|Sek4|Tyro6	Eph receptor B3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170176507-3	chr2	170176027	170177027	+	884.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33852.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32762650-4	chr19	32762128	32763128	+	884.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 1 of 8)	intron (NM_008960, intron 1 of 8)	5051.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	16.5	70.5	34.5	20.0	55.5	46.0
Merged-chr6-108212335-3	chr6	108211804	108212804	+	884.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010585)	promoter-TSS (NM_010585)	-792.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	7.0	0.5	3.0	6.5	0.0	4.0
Merged-chr9-77732283-3	chr9	77731778	77732778	+	884.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22257.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	5.5	5.0	2.5	0.0	2.0	1.5
Merged-chr18-66477445-6	chr18	66476898	66477898	+	884.319458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	18794.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-151995186-7	chr4	151994701	151995701	+	884.3095089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172705, intron 1 of 3)	CpG	978.0	NM_172705	230936.0	Mm.25582	NM_172705	ENSMUSG00000047777	Phf13	BC029632|Phf5|SPOC1	PHD finger protein 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140641012-4	chr5	140640456	140641456	+	884.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308040, intron 1 of 12)	intron (NM_001308040, intron 1 of 12)	8075.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-108378231-4	chr11	108377726	108378726	+	884.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17071.0	NM_013475	11818.0	Mm.2266	NM_013475	ENSMUSG00000000049	Apoh	B2GPI|beta-2-GPI|beta2-GPI	apolipoprotein H	protein-coding	0.0	0.0	0.5	0.0	0.5	2.5
Merged-chr10-127292209-4	chr10	127291697	127292697	+	884.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290183, intron 1 of 2)	intron (NM_001290183, intron 1 of 2)	1404.0	NM_001290183	13198.0	Mm.110220	NM_007837	ENSMUSG00000025408	Ddit3	CHOP-10|CHOP10|chop|gadd153	DNA-damage inducible transcript 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-36521969-4	chr12	36521465	36522465	+	884.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001289502, exon 7 of 9)	exon (NM_001289502, exon 7 of 9)	106349.0	NR_037309	100499526.0		NR_037309	ENSMUSG00000092917	Mir3472	mmu-mir-3472	microRNA 3472	ncRNA	2.0	4.5	9.0	10.0	0.0	2.0
Merged-chr4-33895183-4	chr4	33894692	33895692	+	884.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-29167.0	NM_001355020	12801.0	Mm.7992	NM_007726	ENSMUSG00000044288	Cnr1	CB-R|CB1|CB1R	cannabinoid receptor 1 (brain)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-43223723-3	chr11	43223224	43224224	+	884.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176999, intron 14 of 22)	intron (NM_176999, intron 14 of 22)	73847.0	NM_176999	319767.0	Mm.252339	NM_176999	ENSMUSG00000055415	Atp10b	5930426O13Rik|9030605H24Rik	ATPase, class V, type 10B	protein-coding	17.5	13.0	17.5	4.0	4.0	9.0
Merged-chr2-49748738-4	chr2	49748232	49749232	+	884.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008449, intron 21 of 25)	MIR|SINE|MIR	-38954.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77258264-2	chr10	77257764	77258764	+	884.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_026944, intron 1 of 1)	intron (NR_026944, intron 1 of 1)	959.0	NR_026944	100169878.0	Mm.420901	NR_026944	ENSMUSG00000078444	Gm10941	-	predicted gene 10941	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70540481-4	chr8	70540010	70541010	+	884.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	835.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	13.5	22.0	17.5	20.0	26.5	18.5
Merged-chr15-28365379-4	chr15	28364890	28365890	+	884.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133365, intron 47 of 78)	intron (NM_133365, intron 47 of 78)	161624.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95823008-2	chr15	95822508	95823508	+	884.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	7064.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87751733-4	chr11	87751195	87752195	+	884.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5169.0	NR_029555	387160.0		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	76.5	294.0	186.0	160.5	277.0	291.0
Merged-chr11-49846131-4	chr11	49845617	49846617	+	884.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163672)	promoter-TSS (NM_001163672)	-634.0	NM_001163671	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25447969-2	chr10	25447469	25448469	+	884.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 3 of 16)	intron (NM_001358754, intron 3 of 16)	39601.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-157077246-4	chr1	157076782	157077782	+	884.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31368.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	4.0	3.5	1.0	1.0	3.0	8.5
Merged-chr13-98031456-4	chr13	98030950	98031950	+	884.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012026, intron 7 of 35)	intron (NM_012026, intron 7 of 35)	174715.0	NM_012026	110596.0	Mm.252718	NM_012026	ENSMUSG00000021662	Arhgef28	9230110L08Rik|AI323540|D13Bwg1089e|RIP2|Rgnef|RhoGEF|Rhoip2|p190RhoGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding	5.5	3.0	4.5	8.5	1.5	2.0
Merged-chr2-124620024-4	chr2	124619527	124620527	+	884.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	9731.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-117831751-4	chr12	117831281	117832281	+	884.2374880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12080.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	2.0	16.0	4.5	1.5	16.5	2.0
Merged-chr4-10977191-4	chr4	10976710	10977710	+	884.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30409.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	34.0	78.5	35.5	26.0	58.0	46.0
Merged-chr4-109505072-4	chr4	109504577	109505577	+	884.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001199090)	TTS (NM_001199090)	26127.0	NM_001199090	67646.0	Mm.45820	NM_026291	ENSMUSG00000060491	4930522H14Rik	1700007J23Rik	RIKEN cDNA 4930522H14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68075522-3	chr10	68075058	68076058	+	884.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	95988.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	8.5	6.0	1.0	6.5	6.0	10.5
Merged-chr3-58376939-4	chr3	58376441	58377441	+	884.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37779.0	NM_001081229	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122269536-4	chr8	122269029	122270029	+	884.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12612.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164940574-4	chr2	164940088	164941088	+	884.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7631.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	0.0	0.0	0.0	5.0	1.0	0.0
Merged-chr9-66344819-3	chr9	66344320	66345320	+	884.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-5630.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82151448-2	chr15	82150976	82151976	+	884.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_033218, intron 1 of 18)	intron (NM_033218, intron 1 of 18)	4207.0	NM_033218	20788.0	Mm.38016	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	16.5	4.5	3.0	5.5	9.5	1.0
Merged-chr5-121215553-3	chr5	121215043	121216043	+	884.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4676.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	6.0	8.0	8.0	2.5	3.0	6.5
Merged-chr5-24025131-2	chr5	24024626	24025626	+	884.1666869999999	f0_balb.idr|f1_balb.idr	intron (NM_053090, intron 1 of 10)	intron (NM_053090, intron 1 of 10)	5186.0	NM_001310471	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	6.5	11.5	7.0	40.0	66.5	24.0
Merged-chr19-44410773-2	chr19	44410273	44411273	+	884.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3064.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12437998-2	chr19	12437509	12438509	+	884.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12C|LTR|ERVK	10104.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	54.0	119.0	47.5	32.5	76.5	62.0
Merged-chr2-84882790-2	chr2	84882290	84883290	+	884.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_199223, intron 1 of 2)	intron (NM_199223, intron 1 of 2)	3902.0	NM_199223	269295.0	Mm.86447	NM_199223	ENSMUSG00000050896	Rtn4rl2	Ngr2|Ngrh1|Ngrl3	reticulon 4 receptor-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-47035625-4	chr7	47035108	47036108	+	884.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-15032.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60435113-3	chr13	60434618	60435618	+	884.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-166829.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.5	5.5	1.5	2.0	2.0	0.0
Merged-chr5-124532143-3	chr5	124531636	124532636	+	884.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021430)	promoter-TSS (NM_021430)	-745.0	NM_021430	75695.0	Mm.41180	NM_021430	ENSMUSG00000029392	Rilpl1	2900002H16Rik|6330559I19Rik|GOSPEL	Rab interacting lysosomal protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155293625-4	chr1	155293131	155294131	+	884.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011273, intron 11 of 14)	intron (NM_011273, intron 11 of 14)	123813.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69986474-4	chr12	69986000	69987000	+	884.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022028, intron 1 of 4)	CpG	502.0	NM_022028	64010.0	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35433645-4	chr2	35433165	35434165	+	884.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	27784.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68541860-4	chr10	68541382	68542382	+	884.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028491)	promoter-TSS (NM_028491)	-7.0	NM_028491	73287.0	Mm.141830	NM_028491	ENSMUSG00000019945	Cabcoco1	1700040L02Rik	ciliary associated calcium binding coiled-coil 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-58907131-3	chr6	58906619	58907619	+	884.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021432)	promoter-TSS (NM_021432)	7.0	NM_021432	58243.0	Mm.389747	NM_021432	ENSMUSG00000055430	Nap1l5	1110020M21Rik	nucleosome assembly protein 1-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65680302-4	chr17	65679787	65680787	+	884.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 5 of 6)	intron (NM_133685, intron 5 of 6)	-38083.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-50854027-4	chr2	50853528	50854528	+	884.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55656.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108688829-2	chr8	108688329	108689329	+	884.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	-25815.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16167605-4	chr7	16167124	16168124	+	884.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44A|LTR|ERVK	-7771.0	NM_001277988	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	1.0	0.0	3.5	2.0	0.0	3.0
Merged-chr19-7270778-2	chr19	7270278	7271278	+	884.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_054048, exon 6 of 13)	exon (NM_054048, exon 6 of 13)	2499.0	NM_001320554	104383.0	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119267230-2	chr11	119266739	119267739	+	884.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159324)	promoter-TSS (NM_001159324)	-724.0	NM_001159324	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	23.5	21.5	49.5	8.5	26.5	43.0
Merged-chr9-123798342-2	chr9	123797842	123798842	+	884.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110253, intron 15 of 17)	L2a|LINE|L2	-8135.0	NM_030712	80901.0	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62197623-4	chr10	62197103	62198103	+	884.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 3 of 7)	intron (NM_197996, intron 3 of 7)	-3376.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-69536044-3	chr13	69535514	69536514	+	884.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-2150.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	19.5	13.5	25.0	54.5	62.0	95.0
Merged-chr13-113957740-2	chr13	113957240	113958240	+	884.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 3 of 4)	intron (NM_172595, intron 3 of 4)	163232.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34195558-2	chr10	34195058	34196058	+	884.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	RSINE1|SINE|B4	11993.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37688047-2	chr10	37687547	37688547	+	884.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-487727.0	NR_131035	75877.0	Mm.402094	NR_131035	ENSMUSG00000111234	4930591E09Rik	-	RIKEN cDNA 4930591E09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25509845-2	chr9	25509345	25510345	+	884.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	RMER17B|LTR|ERVK	28248.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79967911-2	chr11	79967411	79968411	+	884.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5524.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100714736-3	chr11	100714246	100715246	+	884.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029307)	TTS (NM_029307)	896.0	NM_029307	75482.0	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	3.5	8.5	2.5	6.0	4.0	4.5
Merged-chr15-101237032-3	chr15	101236529	101237529	+	884.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11843.0	NR_045328	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13443808-3	chr10	13443343	13444343	+	884.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	30553.0	NM_001195065	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19561147-2	chr7	19560647	19561647	+	884.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199149, intron 1 of 12)	intron (NM_199149, intron 1 of 12)	1251.0	NM_199149	232947.0	Mm.219662	NM_199149	ENSMUSG00000051403	Ppp1r37	Gm158|Lrrc68	protein phosphatase 1, regulatory subunit 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24965919-2	chr2	24965419	24966419	+	884.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355560, intron 2 of 5)	B2_Mm1a|SINE|B2	3497.0	NM_026044	67228.0	Mm.389248	NM_026044	ENSMUSG00000026975	Dph7	2810443J12Rik|AW060693|Wdr85	diphthamine biosynethesis 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34071248-1	chr17	34070748	34071748	+	884.0	f1_c57bl6.idr	Intergenic	Intergenic	-21131.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	3.5	10.0	0.0	1.0	0.0	1.0
Merged-chr10-14115733-1	chr10	14115233	14116233	+	884.0	f1_c57bl6.idr	intron (NM_001358783, intron 4 of 12)	intron (NM_001358783, intron 4 of 12)	149354.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.0	6.5	1.5	0.0	6.5	11.0
Merged-chr2-129903577-4	chr2	129903089	129904089	+	884.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102130.0	NR_029452	654409.0	Mm.305555	NR_029452		Stk35os1	4932416H05Rik	serine/threonine kinase 35, opposite strand 1	ncRNA	20.5	7.5	19.5	16.0	11.0	24.5
Merged-chr14-62245015-2	chr14	62244515	62245515	+	884.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47964.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79841800-2	chr3	79841262	79842262	+	884.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027495, intron 1 of 11)	intron (NM_027495, intron 1 of 11)	900.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	25.5	36.0	23.5	11.0	1.5	7.5
Merged-chr7-141386372-2	chr7	141385872	141386872	+	884.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5788.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-55548890-2	chr18	55548391	55549391	+	884.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-556300.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	3.0	16.0	0.5	3.5	3.5	0.0
Merged-chr5-31514243-2	chr5	31513743	31514743	+	884.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028150)	TTS (NM_028150)	12519.0	NM_028150	72195.0	Mm.164187	NM_028150	ENSMUSG00000053134	Supt7l	2610524B01Rik|6030455L14Rik	suppressor of Ty 7-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78383611-3	chr15	78383100	78384100	+	884.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163613, intron 3 of 4)	ORR1F|LTR|ERVL-MaLR	5169.0	NM_001163613	73376.0	Mm.73222	NM_028522	ENSMUSG00000062154	Tex33	1700061J05Rik|Ean57	testis expressed 33	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr13-67451190-1	chr13	67450690	67451690	+	884.0	f1_balb.idr	intron (NM_177712, intron 1 of 3)	intron (NM_177712, intron 1 of 3)	434.0	NM_177712	238692.0	Mm.486478	NM_177712	ENSMUSG00000069206	Zfp874a	C330011K17Rik|Rslcan15|Zfp874	zinc finger protein 874a	protein-coding	12.0	15.5	22.5	5.5	19.0	17.0
Merged-chr16-4082481-2	chr16	4081981	4082981	+	884.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4671.0	NM_026508	68015.0	Mm.123366	NM_026508	ENSMUSG00000005981	Trap1	2410002K23Rik|HSP75	TNF receptor-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10868568-2	chr19	10868068	10869068	+	884.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133804, intron 1 of 10)	intron (NM_133804, intron 1 of 10)	1211.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-37910415-2	chr18	37909915	37910915	+	884.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305980, intron 1 of 27)	intron (NM_001305980, intron 1 of 27)	25061.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31429955-2	chr14	31429455	31430455	+	884.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	6145.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6489604-2	chr11	6489104	6490104	+	884.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13528.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127086952-2	chr2	127086452	127087452	+	884.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026678, intron 5 of 7)	intron (NM_026678, intron 5 of 7)	16295.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	29.5	59.0	38.5	20.5	44.0	34.0
Merged-chr2-133494002-2	chr2	133493502	133494502	+	884.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-58157.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-65472680-4	chr16	65472172	65473172	+	884.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47957.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	0.0	1.0	0.0	0.0	0.5	0.0
Merged-chr13-113337419-4	chr13	113337059	113338059	+	884.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	127900.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-84610899-3	chr16	84610408	84611408	+	883.988892	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68881.0	NR_040537	78023.0	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	0.0	2.5	2.0	0.0	2.5	2.0
Merged-chr7-25827394-4	chr7	25826892	25827892	+	883.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10862.0	NM_028775	74134.0	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-53877443-3	chr10	53876946	53877946	+	883.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126537.0	NM_001081428	75906.0	Mm.436785	NM_001081428	ENSMUSG00000019856	Fam184a	3110012E06Rik|4930438C08Rik|4930589M24Rik	family with sequence similarity 184, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-112217804-4	chr2	112217272	112218272	+	883.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6BA|LTR|ERVK	-22069.0	NM_207206	99010.0	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-93989443-4	chr13	93988924	93989924	+	883.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68372.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-23092483-3	chr2	23092020	23093020	+	883.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149742, intron 8 of 12)	(CA)n|Simple_repeat|Simple_repeat	23448.0	NM_001355638	74159.0	Mm.181973	NM_028793	ENSMUSG00000026781	Acbd5	1300014E15Rik	acyl-Coenzyme A binding domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37430773-4	chr9	37430259	37431259	+	883.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164767, intron 1 of 27)	intron (NM_001164767, intron 1 of 27)	2416.0	NM_001164767	19649.0	Mm.212826	NM_011248	ENSMUSG00000032128	Robo3	Rbig1|Rig-1|Rig1|Robo3a|Robo3b	roundabout guidance receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135522157-3	chr7	135521654	135522654	+	883.9332890000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178669, intron 1 of 2)	intron (NM_178669, intron 1 of 2)	6500.0	NM_178669	212070.0	Mm.39721	NM_178669	ENSMUSG00000050866	Clrn3	AI649392|Tmem12	clarin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11549862-4	chr8	11549382	11550382	+	883.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359137, intron 2 of 14)	intron (NM_001359137, intron 2 of 14)	889.0	NM_024248	71941.0	Mm.196576	NM_024248	ENSMUSG00000056228	Cars2	2310051N18Rik|2410044A07Rik|D530030H10Rik|cysRS	cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120103624-3	chr8	120103136	120104136	+	883.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2164.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100188260-3	chr12	100187756	100188756	+	883.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045282, exon 1 of 3)	non-coding (NR_045282, exon 1 of 3)	288.0	NR_045282	100038378.0	Mm.387075	NR_045282	ENSMUSG00000072884	Gm10433	-	predicted gene 10433	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184626599-3	chr1	184626103	184627103	+	883.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-68912.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44799361-3	chr9	44798834	44799834	+	883.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357383)	promoter-TSS (NM_001357383)	-87.0	NM_001357383	71687.0	Mm.41409	NM_027865	ENSMUSG00000002032	Tmem25	0610039J01Rik|AI429491	transmembrane protein 25	protein-coding	1.0	2.5	0.0	0.0	2.5	0.0
Merged-chr6-33790939-3	chr6	33790440	33791440	+	883.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 11 of 17)	intron (NM_009148, intron 11 of 17)	-238508.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-31089889-3	chr7	31089397	31090397	+	883.8777470000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-13200.0	NM_008557	17178.0	Mm.263847	NM_008557	ENSMUSG00000057092	Fxyd3	Mat8	FXYD domain-containing ion transport regulator 3	protein-coding	0.0	2.5	2.0	4.0	3.0	11.5
Merged-chr12-111907725-4	chr12	111907225	111908225	+	883.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011625, intron 1 of 16)	C-rich|Low_complexity|Low_complexity	330.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92974313-4	chr1	92973784	92974784	+	883.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001104529, intron 1 of 1)	intron (NM_001104529, intron 1 of 1)	-1063.0	NM_001271766	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5834001-4	chr19	5833517	5834517	+	883.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131212, exon 1 of 1)	non-coding (NR_131212, exon 1 of 1)	11461.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.0	1.5	5.0	1.0	7.0	0.5
Merged-chr4-40242137-4	chr4	40241683	40242683	+	883.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2358.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101971589-3	chr11	101971089	101972089	+	883.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028207, exon 3 of 3)	3' UTR (NM_028207, exon 3 of 3)	-4574.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21545484-4	chr5	21544989	21545989	+	883.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199632, intron 11 of 20)	intron (NM_001199632, intron 11 of 20)	1962.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155757074-3	chr2	155756567	155757567	+	883.805542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A|LTR|ERVL	5850.0	NM_011171	19124.0	Mm.3243	NM_011171	ENSMUSG00000027611	Procr	AI325044|Ccca|Ccd41|Epcr	protein C receptor, endothelial	protein-coding	10.5	22.5	17.5	0.0	0.5	2.0
Merged-chr11-77460928-6	chr11	77460511	77461511	+	883.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291190)	TTS (NM_001291190)	-2902.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-37361211-4	chr3	37360699	37361699	+	883.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008006, intron 1 of 2)	intron (NM_008006, intron 1 of 2)	12546.0	NM_008006	14173.0	Mm.473689	NM_008006	ENSMUSG00000037225	Fgf2	Fgf-2|Fgfb|bFGF	fibroblast growth factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23272219-4	chr11	23271718	23272718	+	883.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035226, intron 5 of 25)	B2_Mm1t|SINE|B2	16177.0	NM_134014	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	0.0	0.5	2.5	0.0	0.0	2.0
Merged-chr13-24095008-4	chr13	24094516	24095516	+	883.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026825, intron 21 of 37)	MIR|SINE|MIR	-103802.0	NM_145399	214189.0	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-87215303-4	chr14	87214819	87215819	+	883.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74095.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	1.0	0.0	6.5	12.5	0.0	3.0
Merged-chr12-87393575-4	chr12	87393079	87394079	+	883.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5224.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97412996-3	chr11	97412475	97413475	+	883.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37185.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44960257-2	chr7	44959771	44960771	+	883.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357670, intron 16 of 18)	intron (NM_001357670, intron 16 of 18)	14580.0	NM_001357670	78070.0	Mm.231465	NM_153679	ENSMUSG00000007783	Cpt1c	6530437J22Rik|9630004I06Rik|CPT I-C|CPT IC|CPT1-B|CPTI-B	carnitine palmitoyltransferase 1c	protein-coding	0.0	0.0	2.0	0.0	3.5	0.0
Merged-chr10-41893847-3	chr10	41893324	41894324	+	883.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013370, intron 1 of 9)	intron (NM_001013370, intron 1 of 9)	6385.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103304033-2	chr15	103303586	103304586	+	883.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6352.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34865984-2	chr6	34865484	34866484	+	883.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_197986, intron 1 of 1)	intron (NM_197986, intron 1 of 1)	2838.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-64853150-4	chr16	64852648	64853648	+	883.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357416, intron 2 of 2)	intron (NM_001357416, intron 2 of 2)	1147.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81137600-4	chr13	81137111	81138111	+	883.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	173537.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72748649-4	chr6	72748136	72749136	+	883.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079822, intron 3 of 12)	intron (NM_001079822, intron 3 of 12)	40409.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-17028796-1	chr13	17028296	17029296	+	883.75	f0_balb.idr	intron (NM_138654, intron 12 of 13)	ORR1F|LTR|ERVL-MaLR	665969.0	NM_138654	192136.0	Mm.364180	NM_138654	ENSMUSG00000055137	Sugct	5033411D12Rik|D17907	succinyl-CoA glutarate-CoA transferase	protein-coding	0.5	4.5	3.5	1.0	4.0	0.0
Merged-chr4-33244108-4	chr4	33243572	33244572	+	883.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	4715.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-14603669-4	chr14	14603166	14604166	+	883.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99359.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	0.0	12.0	2.0	3.0	5.0	5.0
Merged-chr4-43041414-3	chr4	43040922	43041922	+	883.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045567, intron 1 of 7)	intron (NR_045567, intron 1 of 7)	-1121.0	NM_001253354	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	31.0	31.5	37.0	29.0	55.5	35.0
Merged-chr4-130799238-9	chr4	130798813	130799813	+	883.7222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	6776.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84562368-3	chr2	84561872	84562872	+	883.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-55499.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	0.0	0.0	10.0	3.5	2.0	2.5
Merged-chr2-120494839-4	chr2	120494339	120495339	+	883.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001177799, exon 10 of 21)	exon (NM_001177799, exon 10 of 21)	17930.0	NM_001109761	12335.0	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	3.0	1.5	5.5	3.5	2.5	4.0
Merged-chr17-45736870-4	chr17	45736392	45737392	+	883.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 1 of 4)	(CG)n|Simple_repeat|Simple_repeat	2386.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-68191950-4	chr8	68191438	68192438	+	883.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84590.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	22.5	40.0	33.0	5.0	14.5	3.5
Merged-chr10-81173953-2	chr10	81173453	81174453	+	883.6999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2678.0	NM_007907	13629.0	Mm.2903	NM_007907	ENSMUSG00000034994	Eef2	Ef-2	eukaryotic translation elongation factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127931718-4	chr7	127931218	127932218	+	883.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001319147)	TTS (NM_001319147)	-1605.0	NM_133351	76560.0	Mm.5875	NM_133351	ENSMUSG00000030800	Prss8	2410039E18Rik|AI313909|C79772|CAP1|fr|mCAP1	protease, serine 8 (prostasin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117544805-3	chr4	117544313	117545313	+	883.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5511.0	NM_001356404	140546.0	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17409238-4	chr16	17408737	17409737	+	883.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023348, intron 1 of 4)	intron (NM_023348, intron 1 of 4)	-2923.0	NM_001001983	224020.0	Mm.5718	NM_001001983	ENSMUSG00000041720	Pi4ka	Pik4ca	phosphatidylinositol 4-kinase alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84794139-4	chr2	84793650	84794650	+	883.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS4|LTR|ERV1	-4678.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93507170-3	chr1	93506649	93507649	+	883.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159719, intron 12 of 12)	intron (NM_001159719, intron 12 of 12)	-4955.0	NM_145519	227377.0	Mm.243091	NM_145519	ENSMUSG00000034066	Farp2	AI465173|BC009153|D030026M03Rik|Fir|mKIAA0793	FERM, RhoGEF and pleckstrin domain protein 2	protein-coding	0.5	6.5	1.0	0.0	4.0	2.5
Merged-chr3-86129975-3	chr3	86129462	86130462	+	883.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001082414, exon 15 of 15)	3' UTR (NM_001082414, exon 15 of 15)	8896.0	NR_004417	19870.0		NR_004417	ENSMUSG00000064984	Snord73a	Rnu73a|U73a	small nucleolar RNA, C/D box U73A	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-137753109-3	chr3	137752606	137753606	+	883.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30509.0	NR_105801	102466638.0		NR_105801	ENSMUSG00000099011	Mir6380	Gm27356|mmu-mir-6380	microRNA 6380	ncRNA	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr14-21988427-3	chr14	21987921	21988921	+	883.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145459, intron 1 of 2)	CpG-4314	1180.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94572037-3	chr10	94571499	94572499	+	883.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359760, intron 1 of 3)	intron (NM_001359760, intron 1 of 3)	-3258.0	NM_001168684	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110373582-3	chr12	110373082	110374082	+	883.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-73597.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38695360-3	chr16	38694848	38695848	+	883.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 1 of 11)	MLT1D|LTR|ERVL-MaLR	17687.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-81372411-3	chr6	81371916	81372916	+	883.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	523247.0	NR_106091	102465711.0		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA	0.0	4.5	8.5	3.5	1.5	2.5
Merged-chr7-88244656-3	chr7	88244140	88245140	+	883.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33445.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	10.0	17.5	7.5	19.0	15.0	15.5
Merged-chr1-39686041-3	chr1	39685540	39686540	+	883.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145660, intron 7 of 14)	intron (NM_001145660, intron 7 of 14)	-34858.0	NM_170597	263764.0	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45007244-2	chr19	45006747	45007747	+	883.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053164)	promoter-TSS (NM_053164)	689.0	NM_153796	226153.0	Mm.105585	NM_153796	ENSMUSG00000025209	Twnk	D19Ertd626e|PEO|Peo1|Twinl	twinkle mtDNA helicase	protein-coding	0.0	2.0	2.5	3.0	2.0	5.5
Merged-chr12-108209238-2	chr12	108208738	108209738	+	883.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159910, intron 3 of 5)	intron (NM_001159910, intron 3 of 5)	29500.0	NM_009832	12454.0	Mm.474441	NM_009832	ENSMUSG00000021258	Ccnk	AW123198|AW413594|CPR4|CycK	cyclin K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98345390-2	chr11	98344890	98345890	+	883.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3016.0	NM_144828	19049.0	Mm.45372	NM_144828	ENSMUSG00000061718	Ppp1r1b	AU040756|DARPP-32|Darpp32	protein phosphatase 1, regulatory (inhibitor) subunit 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79680692-4	chr8	79680238	79681238	+	883.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31002.0	NM_015751	24015.0	Mm.5831	NM_015751	ENSMUSG00000058355	Abce1	C79080|Oabp|RLI|RNS41|RNS4I|Rnaseli	ATP-binding cassette, sub-family E (OABP), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-12279509-4	chr12	12278987	12279987	+	883.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	17348.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	46.5	107.0	66.0	42.0	98.0	63.0
Merged-chr9-3012580-2	chr9	3012081	3013081	+	883.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	26162.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-52743472-4	chr5	52742975	52743975	+	883.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025951, intron 1 of 9)	intron (NM_025951, intron 1 of 9)	1901.0	NM_025951	67073.0	Mm.248647	NM_025951	ENSMUSG00000029186	Pi4k2b	2610042N09Rik|4933409G22Rik	phosphatidylinositol 4-kinase type 2 beta	protein-coding	5.0	35.5	51.5	10.5	85.0	41.0
Merged-chr4-45499418-4	chr4	45498934	45499934	+	883.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	31394.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	22.5	32.5	19.0	11.0	40.5	31.0
Merged-chr15-103183387-4	chr15	103182905	103183905	+	883.62085	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20121.0	NM_027885	71726.0	Mm.254820	NM_027885	ENSMUSG00000036061	Smug1	1200013B09Rik|A930006H09Rik|C85220	single-strand selective monofunctional uracil DNA glycosylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97760145-3	chr15	97759687	97760687	+	883.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177810, intron 6 of 27)	intron (NM_001177810, intron 6 of 27)	7479.0	NM_001177810	223864.0	Mm.24028	NM_144850	ENSMUSG00000022469	Rapgef3	2310016P22Rik|9330170P05Rik|Epac|Epac1	Rap guanine nucleotide exchange factor (GEF) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43739830-3	chr13	43739314	43740314	+	883.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23023.0	NR_046022	622552.0	Mm.375036	NR_046022	ENSMUSG00000110016	Gm20751	-	predicted gene, 20751	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50846921-2	chr14	50846421	50847421	+	883.583374	f1_balb.idr|f1_c57bl6.idr	exon (NM_009351, exon 19 of 55)	exon (NM_009351, exon 19 of 55)	23633.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	15.0	26.0	6.5	5.5	26.5	3.0
Merged-chr4-108387796-4	chr4	108387283	108388283	+	883.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4128.0	NM_001099303	545667.0	Mm.380025	NM_001099303	ENSMUSG00000059816	Fam159a	Shisal2a	family with sequence similarity 159, member A	protein-coding	5.0	0.0	0.5	0.0	6.5	0.0
Merged-chr2-122610283-3	chr2	122609770	122610770	+	883.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025961, intron 1 of 8)	intron (NM_025961, intron 1 of 8)	1007.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	9.0	17.5	8.5	18.5	19.0	10.5
Merged-chr5-34238682-3	chr5	34238187	34239187	+	883.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 2 of 12)	L1M4|LINE|L1	49637.0	NM_001015039	231125.0	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128179931-3	chr2	128179415	128180415	+	883.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	52340.0	NM_001284410	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0.0	5.0	1.0	0.0	5.0	1.0
Merged-chr1-125447804-3	chr1	125447286	125448286	+	883.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12059.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167483304-4	chr2	167482822	167483822	+	883.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_170756, exon 3 of 3)	3' UTR (NM_170756, exon 3 of 3)	-9323.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27989950-4	chr17	27989440	27990440	+	883.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 9 of 24)	intron (NM_181413, intron 9 of 24)	80634.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	2.5	0.0	4.0	7.5	6.0	5.5
Merged-chr11-17280143-4	chr11	17279679	17280679	+	883.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	22491.0	NM_001330649	57316.0	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr9-7259918-4	chr9	7259419	7260419	+	883.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-12595.0	NM_008607	17386.0	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18772570-4	chr2	18772085	18773085	+	883.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11723.0	NR_126079	100041479.0	Mm.393659	NR_126079	ENSMUSG00000092353	Gm3363	-	predicted gene 3363	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152913848-4	chr1	152913361	152914361	+	883.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11215.0	NM_001005507	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89157161-4	chr3	89156690	89157690	+	883.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008227, intron 1 of 7)	RSINE1|SINE|B4	2967.0	NM_008227	15168.0	Mm.389461	NM_008227	ENSMUSG00000028051	Hcn3	BCNG-4|Bcng4|Hac3|Hcn4	hyperpolarization-activated, cyclic nucleotide-gated K+ 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58899985-7	chr9	58899500	58900500	+	883.5238039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042752, intron 20 of 27)	intron (NM_001042752, intron 20 of 27)	76488.0	NM_001081192	330953.0	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-12270157-4	chr12	12269645	12270645	+	883.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	MTD|LTR|ERVL-MaLR	8006.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9898799-5	chr19	9898283	9899283	+	883.5200199999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016692, intron 1 of 17)	intron (NM_016692, intron 1 of 17)	750.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	14.5	32.0	32.0	24.5	30.5	19.0
Merged-chr1-171286595-2	chr1	171286095	171287095	+	883.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013919, exon 2 of 13)	exon (NM_013919, exon 2 of 13)	1366.0	NM_013919	30941.0	Mm.27510	NM_013919	ENSMUSG00000053483	Usp21	ESTM28|Usp16|Usp23|W53272	ubiquitin specific peptidase 21	protein-coding	2.5	6.5	3.0	4.5	0.5	1.0
Merged-chr11-98362341-2	chr11	98361841	98362841	+	883.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021547, intron 1 of 14)	intron (NM_021547, intron 1 of 14)	3973.0	NM_021547	59045.0	Mm.265546	NM_021547	ENSMUSG00000018167	Stard3	Mln64|es64	START domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165884006-3	chr2	165883538	165884538	+	883.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252587, intron 1 of 11)	intron (NM_001252587, intron 1 of 11)	800.0	NM_001252584	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	39.5	76.0	75.0	16.0	80.0	41.5
Merged-chr7-38085955-7	chr7	38085462	38086462	+	883.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21528.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	7.5	0.0	2.0	2.0	0.0	1.5
Merged-chr17-86132696-2	chr17	86132196	86133196	+	883.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030133, intron 4 of 20)	intron (NM_030133, intron 4 of 20)	12479.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	1.5	0.0	1.0	0.0	0.0	0.5
Merged-chr14-122234707-2	chr14	122234207	122235207	+	883.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029556, intron 1 of 7)	intron (NM_029556, intron 1 of 7)	-1069.0	NR_015532	68245.0	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4312104-3	chr18	4311599	4312599	+	883.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40854.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44311130-2	chr19	44310630	44311630	+	883.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	7959.0	NR_039574	100628619.0		NR_039574	ENSMUSG00000093315	Mir5114	mmu-mir-5114|mu-mir-5114	microRNA 5114	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16243619-3	chr7	16243030	16244030	+	883.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176912, intron 1 of 1)	intron (NM_176912, intron 1 of 1)	624.0	NM_176912	319430.0	Mm.239570	NM_176912	ENSMUSG00000074361	C5ar2	C5L2|E030029A11Rik|Gpr77	complement component 5a receptor 2	protein-coding	53.0	87.5	84.0	29.0	82.0	67.0
Merged-chr1-156752449-1	chr1	156751949	156752949	+	883.5	f1_balb.idr	Intergenic	Intergenic	-33539.0	NM_145413	215015.0	Mm.229107	NM_145413	ENSMUSG00000033557	Fam20b	C530043G21Rik|mKIAA0475	family with sequence similarity 20, member B	protein-coding	2.0	18.0	6.0	0.0	8.0	2.0
Merged-chr19-6238435-2	chr19	6237935	6238935	+	883.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2595.0	NM_198168	225849.0	Mm.118076	NM_198168	ENSMUSG00000024777	Ppp2r5b	B'beta|BC026670	protein phosphatase 2, regulatory subunit B', beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94970437-2	chr11	94969937	94970937	+	883.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009161, intron 7 of 10)	intron (NM_009161, intron 7 of 10)	2844.0	NM_018792	54388.0	Mm.30482	NM_018792	ENSMUSG00000038994	Hils1	H1.9|TISP64	histone H1-like protein in spermatids 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70501136-2	chr8	70500636	70501636	+	883.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_018827, exon 6 of 9)	exon (NM_018827, exon 6 of 9)	5290.0	NR_151646	66462.0	Mm.28242	NM_025577	ENSMUSG00000058833	Rex1bd	2810428I15Rik	required for excision 1-B domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr13-110399586-2	chr13	110399086	110400086	+	883.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_152804, intron 12 of 13)	MER5A|DNA|hAT-Charlie	4542.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73926564-2	chr17	73926064	73927064	+	883.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011723, exon 7 of 36)	exon (NM_011723, exon 7 of 36)	23632.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116609637-2	chr11	116609137	116610137	+	883.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167680, intron 2 of 18)	intron (NM_001167680, intron 2 of 18)	14615.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-142758727-2	chr6	142758227	142759227	+	883.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009908, intron 1 of 7)	intron (NM_009908, intron 1 of 7)	2041.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151820722-3	chr1	151820238	151821238	+	883.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001311166, exon 20 of 20)	3' UTR (NM_001311166, exon 20 of 20)	65364.0	NM_001311166	66967.0	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164924606-4	chr2	164924035	164925035	+	883.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12785.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	0.0	4.5	0.5	0.0	4.5	1.5
Merged-chr5-113007543-2	chr5	113007043	113008043	+	883.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	7995.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	2.5	0.5	2.0	2.5	0.5	2.0
Merged-chr2-153250036-2	chr2	153249536	153250536	+	883.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080463, intron 4 of 6)	intron (NM_080463, intron 4 of 6)	8504.0	NM_080463	140484.0	Mm.293761	NM_080463	ENSMUSG00000046020	Pofut1	O-FucT-1|mKIAA0180	protein O-fucosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135678589-2	chr5	135678089	135679089	+	883.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10556.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr1-105972513-2	chr1	105972013	105973013	+	883.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17769.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	47.5	164.0	96.5	59.5	170.5	114.0
Merged-chr11-98808582-2	chr11	98808082	98809082	+	883.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001361931)	TTS (NM_001361931)	-1226.0	NM_138660	192160.0	Mm.40120	NM_138660	ENSMUSG00000078676	Casc3	Btz|Mln51	cancer susceptibility candidate 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-112034876-4	chr8	112034362	112035362	+	883.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23503.0	NM_020584	57321.0	Mm.213064	NM_020584	ENSMUSG00000033430	Terf2ip	Rap1	telomeric repeat binding factor 2, interacting protein	protein-coding	0.0	0.5	1.5	0.0	2.0	4.0
Merged-chr16-17132932-2	chr16	17132432	17133432	+	883.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022324)	promoter-TSS (NM_022324)	-549.0	NM_022324	64136.0	Mm.30222	NM_022324	ENSMUSG00000022769	Sdf2l1	-	stromal cell-derived factor 2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84922015-6	chr3	84921528	84922528	+	883.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177774, intron 3 of 12)	intron (NM_001177774, intron 3 of 12)	-30183.0	NM_080428	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.0	0.0	2.0	0.5	0.0	1.5
Merged-chr16-13254286-2	chr16	13253786	13254786	+	883.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B3|LTR|ERVL	-2195.0	NM_001122667	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99250847-3	chr10	99250315	99251315	+	883.488892	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12416.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127006819-4	chr2	127006301	127007301	+	883.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1910.0	NM_175550	108011.0	Mm.134045	NM_175550	ENSMUSG00000001998	Ap4e1	2310033A20Rik|9930028M04Rik|AV087807	adaptor-related protein complex AP-4, epsilon 1	protein-coding	35.0	37.5	35.0	21.0	40.5	43.5
Merged-chr8-71709859-3	chr8	71709414	71710414	+	883.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028267, intron 24 of 26)	intron (NR_028267, intron 24 of 26)	-8114.0	NM_028189	72297.0	Mm.290837	NM_028189	ENSMUSG00000031803	B3gnt3	2210008L19Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding	2.0	0.0	1.5	0.0	0.0	0.0
Merged-chr13-96593761-4	chr13	96593256	96594256	+	883.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023420, intron 3 of 17)	intron (NM_023420, intron 3 of 17)	51021.0	NM_023420	68018.0	Mm.24125	NM_023420	ENSMUSG00000021669	Col4a3bp	2810404O15Rik|9230101K08Rik|AU016711|CERT|GPBP	collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66811173-4	chr14	66810680	66811680	+	883.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009955, intron 11 of 13)	intron (NM_009955, intron 11 of 13)	57420.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101673370-4	chr11	101672868	101673868	+	883.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7827.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59542726-4	chr9	59542242	59543242	+	883.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	3202.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27676464-3	chr2	27675992	27676992	+	883.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011305)	promoter-TSS (NM_011305)	-709.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-72564487-3	chr11	72563972	72564972	+	883.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14226.0	NM_029932	77577.0	Mm.46185	NM_029932	ENSMUSG00000020798	Spns3	9830002I17Rik	spinster homolog 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-51729229-3	chr12	51728733	51729733	+	883.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001329698, intron 4 of 5)	intron (NM_001329698, intron 4 of 5)	-37319.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55803751-3	chr16	55803253	55804253	+	883.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18385.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31754810-4	chr5	31754301	31755301	+	883.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 3 of 11)	ORR1E|LTR|ERVL-MaLR	56751.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-75845403-4	chr13	75844923	75845923	+	883.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053108, intron 1 of 2)	intron (NM_053108, intron 1 of 2)	5537.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	15.5	32.0	31.0	29.5	43.0	63.5
Merged-chr7-133154129-4	chr7	133153645	133154645	+	883.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25894.0	NR_046279	74970.0	Mm.491044	NR_046279	ENSMUSG00000109816	4930483O08Rik	-	RIKEN cDNA 4930483O08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68842484-4	chr10	68841892	68842892	+	883.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	118646.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-72916015-2	chr17	72915518	72916518	+	883.416626	f0_balb.idr|f1_balb.idr	Intergenic	MIRc|SINE|MIR	-2287.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	8.5	8.0	7.0	19.0	8.0	4.5
Merged-chr12-99284653-4	chr12	99284150	99285150	+	883.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 4 of 5)	intron (NM_183186, intron 4 of 5)	-121842.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71546293-2	chr2	71545793	71546793	+	883.416626	f1_balb.idr|f1_c57bl6.idr	exon (NM_010054, exon 1 of 3)	exon (NM_010054, exon 1 of 3)	461.0	NM_010054	13392.0	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120915294-4	chr9	120914781	120915781	+	883.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040742)	promoter-TSS (NR_040742)	-31.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	3.5	0.0	5.5	3.5	0.0	5.5
Merged-chr3-68713767-3	chr3	68713263	68714263	+	883.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22339.0	NM_008351	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0.0	4.0	0.0	0.0	0.0	0.0
Merged-chr6-70806107-4	chr6	70805657	70806657	+	883.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13982.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3769613-2	chr4	3769114	3770114	+	883.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	54650.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0.0	15.5	8.0	7.5	7.5	1.5
Merged-chr10-127041294-6	chr10	127040741	127041741	+	883.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010792)	promoter-TSS (NM_010792)	153.0	NM_001205036	100504608.0	Mm.486142	NM_001205036	ENSMUSG00000080115	Mettl21b	Fam119b|eef1akmt3	methyltransferase like 21B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71103486-3	chr2	71102984	71103984	+	883.3666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14570.0	NM_028593	73649.0	Mm.45435	NM_028593	ENSMUSG00000027015	Cybrd1	2210407P13Rik|Dcytb	cytochrome b reductase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75791973-3	chr2	75791412	75792412	+	883.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40265.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-121343325-4	chr6	121342900	121343900	+	883.337524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347433, intron 1 of 14)	intron (NM_001347433, intron 1 of 14)	324.0	NM_001347433	14411.0	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94159700-4	chr13	94159216	94160216	+	883.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	101920.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80097692-4	chr15	80097189	80098189	+	883.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207708, intron 1 of 3)	intron (NM_207708, intron 1 of 3)	6355.0	NM_207708	20972.0	Mm.230301	NM_009303	ENSMUSG00000022415	Syngr1	R75468|Syngr1b|p29	synaptogyrin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-51103307-3	chr9	51102758	51103758	+	883.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029654)	promoter-TSS (NR_029654)	-148.0	NR_029654	723932.0		NR_029654	ENSMUSG00000065587	Mir34c	Mirn34c|mir-34c|mmu-mir-34c	microRNA 34c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29550333-2	chr17	29549833	29550833	+	883.3333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162901)	promoter-TSS (NM_001162901)	531.0	NM_198647	381085.0	Mm.328934	NM_198647	ENSMUSG00000042203	Tbc1d22b	BC045600	TBC1 domain family, member 22B	protein-coding	0.0	5.5	0.0	3.5	3.0	2.0
Merged-chr7-44836536-3	chr7	44836049	44837049	+	883.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010215, intron 2 of 7)	intron (NM_010215, intron 2 of 7)	261.0	NM_010215	14204.0	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	0.0	22.5	12.5	5.5	21.5	6.0
Merged-chr5-113640455-2	chr5	113639955	113640955	+	883.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359060, intron 2 of 4)	intron (NM_001359060, intron 2 of 4)	3148.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	5.0	0.0
Merged-chr1-51667877-1	chr1	51667377	51668377	+	883.3333130000001	f0_c57.idr	Intergenic	Intergenic	-71159.0	NR_151621	100045066.0	Mm.404734	NR_151621		Gm17767	-	predicted gene, 17767	ncRNA	11.0	38.0	19.0	1.0	0.0	3.5
Merged-chr6-97929520-3	chr6	97929013	97930013	+	883.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001178049)	promoter-TSS (NM_001178049)	-304.0	NM_001178049	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	15.5	0.0	0.0	2.0	0.0	0.0
Merged-chr2-25166477-3	chr2	25165957	25166957	+	883.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14301.0	NM_025980	67122.0	Mm.46539	NM_025980	ENSMUSG00000078202	Nrarp	2700054M22Rik	Notch-regulated ankyrin repeat protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111567758-3	chr12	111567255	111568255	+	883.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6647.0	NR_045295	100504687.0	Mm.26072	NR_045295	ENSMUSG00000096995	2810029C07Rik	AU017849	RIKEN cDNA 2810029C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-94979669-3	chr4	94979185	94980185	+	883.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177239)	promoter-TSS (NM_177239)	-585.0	NM_177239	320713.0	Mm.208868	NM_177239	ENSMUSG00000062627	Mysm1	C130067A03Rik|C530050H10Rik	myb-like, SWIRM and MPN domains 1	protein-coding	8.0	9.0	2.5	2.5	11.5	2.0
Merged-chr2-36215563-2	chr2	36215063	36216063	+	883.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER77B|LTR|ERVL	-14863.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-43868499-3	chr2	43867962	43868962	+	883.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 5 of 14)	Lx8b|LINE|L1	119638.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27757715-3	chr2	27757224	27758224	+	883.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 8 of 9)	intron (NM_001290481, intron 8 of 9)	47141.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146157619-3	chr3	146157113	146158113	+	883.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 1 of 13)	MTE2b|LTR|ERVL-MaLR	7439.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32816789-4	chr18	32816284	32817284	+	883.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033206)	promoter-TSS (NR_033206)	-76.0	NR_033206	53603.0	Mm.143716	NM_021367	ENSMUSG00000024379	Tslp	-	thymic stromal lymphopoietin	protein-coding	11.0	6.0	20.0	6.0	15.0	12.0
Merged-chr18-20750422-3	chr18	20749929	20750929	+	883.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR10_RN|LTR|ERVK	-4025.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43039065-8	chr4	43038509	43039509	+	883.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045567, intron 1 of 7)	intron (NR_045567, intron 1 of 7)	1292.0	NM_001253353	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-66128846-4	chr17	66128316	66129316	+	883.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003919, intron 2 of 26)	intron (NM_001003919, intron 2 of 26)	5296.0	NM_001348292	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70762032-3	chr8	70761542	70762542	+	883.288879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023065)	TTS (NM_023065)	-1121.0	NM_183170	234384.0	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	7.0	8.0	10.0	6.0	21.0	10.5
Merged-chr3-51327738-5	chr3	51327267	51328267	+	883.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 1 of 9)	L1M4c|LINE|L1	12877.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-5059657-4	chr7	5059140	5060140	+	883.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290432, exon 5 of 6)	exon (NM_001290432, exon 5 of 6)	-2503.0	NM_133671	22185.0	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	16.5	10.5	18.0	5.5	14.5	7.5
Merged-chr17-34301409-2	chr17	34300929	34301929	+	883.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4438.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	24.0	26.0	38.5	11.5	34.5	29.0
Merged-chr4-141143865-2	chr4	141143365	141144365	+	883.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4057.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87619450-2	chr1	87618950	87619950	+	883.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010566)	promoter-TSS (NM_010566)	-862.0	NM_001110193	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95180665-4	chr9	95180171	95181171	+	883.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 14 of 15)	intron (NM_177909, intron 14 of 15)	226599.0	NM_018763	54371.0	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	0.0	5.5	2.5	1.0	8.0	1.0
Merged-chr11-119087498-4	chr11	119087006	119088006	+	883.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1269.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32703526-4	chr16	32703037	32704037	+	883.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30383.0	NM_001289443	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70107113-4	chr12	70106594	70107594	+	883.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286079, intron 1 of 28)	MIRb|SINE|MIR	-4240.0	NM_001081453	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	3.0	3.5	3.5	0.0	0.0	3.0
Merged-chr10-94354362-8	chr10	94353857	94354857	+	883.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	MTEa|LTR|ERVL-MaLR	42408.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148700414-4	chr5	148699928	148700928	+	883.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41412.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	0.5	2.5	0.0	2.0	2.0	0.5
Merged-chr12-108904070-2	chr12	108903570	108904570	+	883.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	9798.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-51448495-4	chr15	51447920	51448920	+	883.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52810.0	NR_045092	100502643.0	Mm.131987	NR_045092	ENSMUSG00000115654	Gm19303	-	predicted gene, 19303	ncRNA	9.0	7.5	7.0	6.5	6.0	8.5
Merged-chr7-99101212-3	chr7	99100738	99101738	+	883.2333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 3 of 14)	intron (NM_178635, intron 3 of 14)	39906.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	20.5	35.5	24.0	24.5	26.0	19.0
Merged-chr7-105787333-3	chr7	105786751	105787751	+	883.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162943, intron 1 of 20)	C-rich|Low_complexity|Low_complexity	299.0	NM_001162943	233651.0	Mm.334108	NM_001162943	ENSMUSG00000036862	Dchs1	3110041P15Rik|C130033F22Rik|CDH25|FIB1|Gm165|PCDH16	dachsous cadherin related 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-81673892-3	chr4	81673405	81674405	+	883.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-186892.0	NR_030570	100124446.0		NR_030570	ENSMUSG00000077941	Mir466h	Mirn466h	microRNA 466h	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69126467-5	chr11	69126012	69127012	+	883.2000119999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_011786, exon 1 of 15)	exon (NM_011786, exon 1 of 15)	135.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	3.0	2.0	5.0	9.0	5.0	2.5
Merged-chr19-32495419-8	chr19	32494947	32495947	+	883.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010799, intron 3 of 4)	intron (NM_010799, intron 3 of 4)	9678.0	NM_010799	17330.0	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55736488-4	chr14	55736003	55737003	+	883.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	9181.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58457159-3	chr13	58456639	58457639	+	883.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53796.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	6.0	8.0	5.0	3.5	3.5	2.0
Merged-chr1-9773341-4	chr1	9772887	9773887	+	883.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24743.0	NM_133220	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	4.5	1.5	0.5	0.0	0.0	0.5
Merged-chr9-9049458-2	chr9	9048958	9049958	+	883.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_027823, intron 5 of 22)	4.5SRNA|scRNA|scRNA	149625.0	NM_008829	18667.0	Mm.12798	NM_008829	ENSMUSG00000031870	Pgr	9930019P03Rik|BB114106|NR3C3|PR|PR-A|PR-B	progesterone receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155284850-3	chr2	155284337	155285337	+	883.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004721, intron 11 of 11)	intron (NM_001004721, intron 11 of 11)	8473.0	NR_046364	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	31.0	59.5	37.0	7.0	14.5	10.0
Merged-chr15-53558169-4	chr15	53557650	53558650	+	883.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	56129.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84809217-2	chr2	84808717	84809717	+	883.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019949, exon 4 of 4)	3' UTR (NM_019949, exon 4 of 4)	10389.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24173069-2	chr17	24172563	24173563	+	883.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3385.0	NM_001361531	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	19.5	68.5	60.0	18.0	54.0	18.5
Merged-chr13-6241654-4	chr13	6241167	6242167	+	883.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-306490.0	NM_145131	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79491515-4	chr8	79491025	79492025	+	883.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92057.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132158423-4	chr4	132157919	132158919	+	883.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13933.0	NM_013622	18386.0	Mm.5243	NM_013622	ENSMUSG00000050511	Oprd1	DOR|DOR-1|Nbor|mDOR	opioid receptor, delta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11776148-7	chr11	11775649	11776649	+	883.142883	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32813.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	0.0	2.5	3.5	9.0	4.0	7.5
Merged-chr3-9647205-4	chr3	9646711	9647711	+	883.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-37126.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35156914-4	chr18	35156417	35157417	+	883.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009818, intron 3 of 17)	MTE2b|LTR|ERVL-MaLR	38005.0	NM_009818	12385.0	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	7.0	17.5	5.5	1.0	3.5	2.0
Merged-chr15-61541028-4	chr15	61540514	61541514	+	883.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	233437.0	NR_040350	432956.0	Mm.404918	NR_040350	ENSMUSG00000116031	D030024E09Rik	-	RIKEN cDNA D030024E09 gene	ncRNA	0.5	3.0	0.0	1.5	3.0	0.0
Merged-chr15-53107741-4	chr15	53107256	53108256	+	883.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	238427.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-69217352-4	chr10	69216867	69217867	+	883.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252638, intron 2 of 11)	intron (NM_001252638, intron 2 of 11)	4173.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-60998277-2	chr9	60997777	60998777	+	883.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18792.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117105497-4	chr2	117104992	117105992	+	883.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-15579.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14997791-4	chr8	14997300	14998300	+	883.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037736, intron 27 of 27)	intron (NM_001037736, intron 27 of 27)	-13225.0	NM_029116	74901.0	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	0.0	0.0	2.0	1.5	1.0	1.0
Merged-chr1-180429993-4	chr1	180429503	180430503	+	883.113098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR40|LTR|ERVK	53501.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114193885-4	chr7	114193398	114194398	+	883.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60782.0	NM_033370	70349.0	Mm.277024	NM_033370	ENSMUSG00000030754	Copb1	2610019B04Rik	coatomer protein complex, subunit beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-106946340-2	chr13	106945840	106946840	+	883.099976	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025447)	promoter-TSS (NM_025447)	-789.0	NM_025447	66254.0	Mm.9563	NM_025447	ENSMUSG00000021692	Dimt1	1500031M22Rik|AV111347|Dimt1l	DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	protein-coding	14.0	73.5	53.0	14.0	71.0	53.5
Merged-chr17-35995197-2	chr17	35994697	35995697	+	883.083374	f1_balb.idr|f1_c57bl6.idr	intron (NR_015618, intron 1 of 1)	B4|SINE|B4	693.0	NR_015618	77810.0	Mm.483143	NR_015618		A930015D03Rik	-	RIKEN cDNA A930015D03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6265822-2	chr19	6265322	6266322	+	883.083374	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029720)	TTS (NR_029720)	978.0	NR_029720	387187.0		NR_029720	ENSMUSG00000065523	Mir192	Mirn192|mir-192|mmu-mir-192	microRNA 192	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62250708-4	chr18	62250202	62251202	+	883.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70602.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	1.5	3.0	9.0	0.0	15.0	3.5
Merged-chr4-149772655-4	chr4	149772242	149773242	+	883.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027460, intron 1 of 6)	intron (NM_027460, intron 1 of 6)	1525.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	21.5	66.0	41.5	31.0	64.0	35.0
Merged-chr15-89180121-3	chr15	89179588	89180588	+	883.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	700.0	NM_001284506	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-45090327-6	chr16	45089827	45090827	+	883.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3684.0	NM_026439	67896.0	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	43.0	71.0	68.0	49.5	99.5	47.0
Merged-chr5-99488810-4	chr5	99488344	99489344	+	883.074402	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	ORR1D2|LTR|ERVL-MaLR	-235917.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	6.0	12.5	22.5	5.0	2.0	12.0
Merged-chr2-73004342-5	chr2	73003760	73004760	+	883.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-23814.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-29734926-4	chr5	29734308	29735308	+	883.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_028426)	TTS (NR_028426)	-1090.0	NM_001359198	23950.0	Mm.290110	NM_011847	ENSMUSG00000029131	Dnajb6	HSJ-2|Mrj|mDj4	DnaJ heat shock protein family (Hsp40) member B6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70598506-4	chr8	70598010	70599010	+	883.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133772, intron 14 of 16)	CpG	4029.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	5.0	1.5	0.5	4.0	2.0	3.0
Merged-chr13-51161807-3	chr13	51161309	51162309	+	883.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9216.0	NM_029173	75124.0	Mm.179243	NM_029173	ENSMUSG00000021396	Nxnl2	4930519N16Rik|Rdcvf2	nucleoredoxin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191950468-4	chr1	191949961	191950961	+	883.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26909.0	NM_001177900	74023.0	Mm.274393	NM_023727	ENSMUSG00000049353	Rd3	3322402L07Rik|rd-3|rd3	retinal degeneration 3	protein-coding	12.5	9.0	17.0	14.0	13.5	1.0
Merged-chr10-81523165-4	chr10	81522674	81523674	+	883.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010304, intron 1 of 6)	ID_B1|SINE|B4	1051.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-8672075-4	chr5	8671595	8672595	+	883.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011076, intron 5 of 29)	intron (NM_011076, intron 5 of 29)	-49143.0	NM_198620	242819.0	Mm.332192	NM_198620	ENSMUSG00000040570	Rundc3b	Gm440	RUN domain containing 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-172346210-4	chr2	172345705	172346705	+	883.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025912, intron 1 of 2)	intron (NM_025912, intron 1 of 2)	628.0	NM_025912	67017.0	Mm.30013	NM_025912	ENSMUSG00000027495	Fam210b	2010011I20Rik|AI430961|AV108736	family with sequence similarity 210, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123253099-4	chr8	123252589	123253589	+	883.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028200, intron 1 of 14)	intron (NM_028200, intron 1 of 14)	-1106.0	NM_020497	57247.0	Mm.379084	NM_020497	ENSMUSG00000001065	Zfp276	AW048709|D8Ertd370e|D8Ertd377e|Znf276	zinc finger protein (C2H2 type) 276	protein-coding	15.0	35.5	32.0	15.5	22.0	14.5
Merged-chr16-76130202-3	chr16	76129675	76130675	+	883.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040575, intron 1 of 2)	intron (NR_040575, intron 1 of 2)	7562.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-90515222-3	chr6	90514730	90515730	+	883.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35563.0	NM_001356412	107747.0	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-101157480-2	chr9	101156980	101157980	+	883.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161362, intron 6 of 13)	Lx7|LINE|L1	41593.0	NM_172144	235542.0	Mm.335386	NM_172144	ENSMUSG00000043154	Ppp2r3a	3222402P14Rik|A730042E07	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr7-38106884-3	chr7	38106354	38107354	+	883.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007633, intron 1 of 11)	intron (NM_007633, intron 1 of 11)	636.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	2.0	6.0	1.5	0.0	7.0	5.0
Merged-chr19-55928995-3	chr19	55928494	55929494	+	883.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 15 of 15)	intron (NR_138565, intron 15 of 15)	33673.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55312950-2	chr19	55312450	55313450	+	883.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025883, intron 3 of 10)	MTD|LTR|ERVL-MaLR	3086.0	NM_001360595	66980.0	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6	zinc finger, DHHC domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-105762242-4	chr7	105761779	105762779	+	883.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001162943, exon 10 of 21)	exon (NM_001162943, exon 10 of 21)	-10044.0	NM_009906	12751.0	Mm.20837	NM_009906	ENSMUSG00000030894	Tpp1	Cln2|LPIC|TPP-1|TPP-I	tripeptidyl peptidase I	protein-coding	0.0	0.0	0.0	3.0	0.0	0.0
Merged-chr1-172206345-2	chr1	172205855	172206855	+	883.0	f0_balb.idr|f0_c57.idr	intron (NM_001329871, intron 1 of 3)	intron (NM_001329871, intron 1 of 3)	449.0	NM_001329871	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	79.5	123.5	86.5	71.5	149.0	138.5
Merged-chr3-99211088-4	chr3	99210540	99211540	+	883.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027462, intron 4 of 5)	intron (NM_027462, intron 4 of 5)	-11587.0	NR_105852	102465230.0		NR_105852	ENSMUSG00000098918	Mir6481	Gm27744|mmu-mir-6481	microRNA 6481	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-131825997-3	chr4	131825506	131826506	+	883.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083119, intron 1 of 30)	intron (NM_001083119, intron 1 of 30)	12272.0	NM_011214	19273.0	Mm.4860	NM_011214	ENSMUSG00000028909	Ptpru	Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda	protein tyrosine phosphatase, receptor type, U	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-22959858-2	chr15	22959358	22960358	+	883.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur1|LINE|L1	-76605.0	NM_001081299	320865.0	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l|Tg(GFAP-APOE_i4)1Hol	cadherin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100160298-2	chr7	100159798	100160798	+	883.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026010, exon 2 of 2)	exon (NM_026010, exon 2 of 2)	1021.0	NM_026010	67164.0	Mm.46777	NM_026010	ENSMUSG00000030725	Lipt2	2610209A20Rik	lipoyl(octanoyl) transferase 2 (putative)	protein-coding	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr2-60123659-4	chr2	60123172	60124172	+	883.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 1 of 35)	intron (NM_001001182, intron 1 of 35)	2068.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35171562-2	chr7	35171062	35172062	+	883.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14823.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	1.0	0.0	5.5	1.0	0.0	0.5
Merged-chr9-102616432-3	chr9	102615936	102616936	+	883.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081122, intron 5 of 16)	intron (NM_001081122, intron 5 of 16)	9688.0	NM_001301689	28135.0	Mm.38910	NM_001081122	ENSMUSG00000032534	Cep63	4921501M07|AL450317.13gm1|AW107703|CD20R|D9Mgc41|D9Mgc48e|ET2	centrosomal protein 63	protein-coding	0.0	4.5	0.5	0.0	0.0	0.0
Merged-chr13-113485028-2	chr13	113484528	113485528	+	883.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 2 of 6)	intron (NR_045501, intron 2 of 6)	17816.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8966312-2	chr19	8965812	8966812	+	883.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026007)	promoter-TSS (NM_026007)	-729.0	NM_026007	67160.0	Mm.247762	NM_026007	ENSMUSG00000071644	Eef1g	2610301D06Rik|AA407312|EF1G	eukaryotic translation elongation factor 1 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24852904-1	chr17	24852404	24853404	+	883.0	f1_c57bl6.idr	exon (NM_024284, exon 2 of 9)	exon (NM_024284, exon 2 of 9)	2237.0	NM_001159626	14651.0	Mm.43784	NM_024284	ENSMUSG00000024158	Hagh	BC019817|Glo-2|Glo2|Rsp29	hydroxyacyl glutathione hydrolase	protein-coding	3.5	7.0	1.0	10.0	10.5	7.5
Merged-chr5-123487890-2	chr5	123487390	123488390	+	883.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1435.0	NM_001033461	381741.0	Mm.297826	NM_001033461	ENSMUSG00000063409	Lrrc43	Gm1061	leucine rich repeat containing 43	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-157446541-4	chr1	157446036	157447036	+	883.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12032.0	NM_001356418	226527.0	Mm.215960	NM_001033284	ENSMUSG00000033488	Cryzl2	-	crystallin zeta like 2	protein-coding	10.0	18.0	31.0	22.5	60.0	38.0
Merged-chr8-120094887-2	chr8	120094387	120095387	+	883.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133967, intron 1 of 7)	intron (NM_133967, intron 1 of 7)	6585.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75505523-1	chr18	75505023	75506023	+	883.0	f1_balb.idr	intron (NM_201354, intron 9 of 11)	intron (NM_201354, intron 9 of 11)	-9122.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	0.0	5.5	1.5	5.5	2.0	3.0
Merged-chr4-45879198-2	chr4	45878694	45879694	+	883.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305421, intron 12 of 18)	L1_Mur3|LINE|L1	-11109.0	NM_198660	381522.0	Mm.54220	NM_198660	ENSMUSG00000035539	Ccdc180	E230008N13Rik|Gm1025	coiled-coil domain containing 180	protein-coding	8.5	0.0	2.0	0.0	1.5	0.0
Merged-chr2-44873904-2	chr2	44873404	44874404	+	883.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-12282.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99179347-4	chr10	99178846	99179846	+	883.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	71211.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86398484-4	chr1	86397935	86398935	+	883.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9074.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139296866-3	chr4	139296387	139297387	+	883.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151463, intron 9 of 10)	intron (NR_151463, intron 9 of 10)	13821.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	6.0	14.5	4.0	6.0	6.5	1.0
Merged-chr10-34280134-2	chr10	34279634	34280634	+	883.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2056.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126936146-3	chr8	126935628	126936628	+	883.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024214, intron 4 of 4)	B2_Mm2|SINE|B2	9793.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43458790-3	chr17	43458273	43459273	+	883.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081178, exon 21 of 21)	3' UTR (NM_001081178, exon 21 of 21)	44000.0	NM_008585	17287.0	Mm.5346	NM_008585	ENSMUSG00000023914	Mep1a	AI098089|AW107200|Mep-1|Mep-1a|Mep1	meprin 1 alpha	protein-coding	1.5	0.0	2.0	0.0	0.0	1.0
Merged-chr4-102493514-3	chr4	102493000	102494000	+	883.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177983, intron 2 of 5)	intron (NM_001177983, intron 2 of 5)	-76560.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77580696-2	chr10	77580196	77581196	+	883.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145925)	promoter-TSS (NM_145925)	-959.0	NM_145925	108705.0	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540|PBF	pituitary tumor-transforming 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-15073576-3	chr3	15073075	15074075	+	883.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102374.0	NR_040550	77127.0	Mm.195792	NR_040549	ENSMUSG00000098008	A930001A20Rik	-	RIKEN cDNA A930001A20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-57421325-2	chr1	57420825	57421825	+	883.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-14651.0	NM_001302963	68736.0	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102032048-2	chr5	102031548	102032548	+	883.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	37873.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107296620-2	chr11	107296120	107297120	+	883.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	intron (NR_153311, intron 4 of 9)	-107239.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52931989-2	chr2	52931489	52932489	+	883.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	74121.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-8338446-2	chr6	8337946	8338946	+	883.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302354, intron 2 of 3)	L1_Mus4|LINE|L1	79158.0	NM_001302353	100036521.0	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-108104597-4	chr11	108104106	108105106	+	882.962524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 3 of 16)	MTD|LTR|ERVL-MaLR	107758.0	NR_106082	102465705.0		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	23.0	11.0	21.5	8.0	14.5	19.5
Merged-chr14-122464746-6	chr14	122464392	122465392	+	882.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_022987, exon 1 of 2)	exon (NM_022987, exon 1 of 2)	766.0	NM_022987	65100.0	Mm.390761	NM_022987	ENSMUSG00000041703	Zic5	1700049L20Rik|Opr	zinc finger protein of the cerebellum 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-113727198-4	chr9	113726692	113727692	+	882.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-14281.0	NM_001286599	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	1.0	4.0	2.0	0.0	1.0	3.0
Merged-chr1-74363688-4	chr1	74363125	74364125	+	882.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033345, intron 4 of 9)	intron (NM_001033345, intron 4 of 9)	1517.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62603748-3	chr11	62603246	62604246	+	882.93335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028541)	promoter-TSS (NR_028541)	286.0	NR_028550	100217455.0		NR_028550	ENSMUSG00000065734	Snord49a	MBII-243	small nucleolar RNA, C/D box 49A	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45654874-4	chr2	45654371	45655371	+	882.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-41734.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-56653309-4	chr6	56652828	56653828	+	882.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51371.0	NM_025520	66373.0	Mm.25642	NM_025520	ENSMUSG00000091625	Lsm5	2010208O10Rik|2310034K10Rik	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-37046809-4	chr17	37046215	37047215	+	882.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019439, exon 2 of 23)	exon (NM_019439, exon 2 of 23)	749.0	NM_019439	54393.0	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-23149933-4	chr19	23149421	23150421	+	882.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_035423)	TTS (NR_035423)	490.0	NR_035423	100316672.0		NR_035423	ENSMUSG00000080626	Mir1192	Mirn1192|mmu-mir-1192	microRNA 1192	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133458219-2	chr4	133457722	133458722	+	882.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21911.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	5.5	3.0	6.0	0.0	6.5	5.0
Merged-chr6-135377982-3	chr6	135377478	135378478	+	882.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001288627, intron 2 of 4)	intron (NM_001288627, intron 2 of 4)	10485.0	NM_001288627	13730.0	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	11.0	1.0	3.0	5.0	0.5	3.5
Merged-chr6-71415646-3	chr6	71415158	71416158	+	882.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355745, intron 2 of 9)	intron (NM_001355745, intron 2 of 9)	24979.0	NM_001355745	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101546857-4	chr7	101546348	101547348	+	882.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	8954.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	19.5	35.0	43.5	34.0	34.0	50.5
Merged-chr12-69454661-4	chr12	69454169	69455169	+	882.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20881.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	30.5	26.5	29.0	39.5	42.0	42.5
Merged-chr9-66277898-4	chr9	66277387	66278387	+	882.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72563.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0.0	0.0	1.0	3.0	0.0	0.5
Merged-chr9-75071369-5	chr9	75070866	75071866	+	882.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010864, exon 1 of 41)	5' UTR (NM_010864, exon 1 of 41)	160.0	NM_010864	17918.0	Mm.3645	NM_010864	ENSMUSG00000034593	Myo5a	9630007J19Rik|AI413174|AI661011|Dbv|MVa|Myo5|MyoVA|Sev-1|d|d-120J|flail|flr	myosin VA	protein-coding	0.0	8.5	0.0	0.0	6.5	2.5
Merged-chr11-120034466-2	chr11	120033966	120034966	+	882.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	7315.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	0.5	7.5	2.5	0.0	5.0	0.5
Merged-chr15-89343562-2	chr15	89343062	89344062	+	882.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	9089.0	NM_019977	56727.0	Mm.158200	NM_019977	ENSMUSG00000022613	Miox	0610009I10Rik|AI314022|Aldrl6|C85427|RSOR	myo-inositol oxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120882981-2	chr4	120882481	120883481	+	882.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_182929, intron 3 of 7)	intron (NM_182929, intron 3 of 7)	28182.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	10.0	16.5	33.0	10.0	18.5	35.0
Merged-chr6-72101108-4	chr6	72100589	72101589	+	882.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	3481.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51360356-3	chr3	51359841	51360841	+	882.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-19697.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67215320-4	chr10	67214817	67215817	+	882.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_207221, exon 4 of 26)	exon (NM_207221, exon 4 of 26)	29567.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-54755562-3	chr3	54755093	54756093	+	882.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019483)	promoter-TSS (NM_019483)	11.0	NM_019483	55994.0	Mm.244353	NM_019483	ENSMUSG00000027796	Smad9	MADH6|Madh8|Madh9|Smad8	SMAD family member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86893218-4	chr12	86892712	86893712	+	882.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8398.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113099794-3	chr6	113099295	113100295	+	882.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028385, intron 1 of 21)	intron (NM_028385, intron 1 of 21)	-5140.0	NM_173005	72895.0	Mm.367159	NM_028385	ENSMUSG00000034269	Setd5	2900045N06Rik|C330007C20|C85544|mKIAA1757	SET domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29571266-4	chr19	29570761	29571761	+	882.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081319, intron 8 of 25)	MTEb|LTR|ERVL-MaLR	48979.0	NM_001081319	226089.0	Mm.353838	NM_177641	ENSMUSG00000038658	Ric1	C030046E11Rik|C130057E09Rik|Kiaa1432	RAB6A GEF complex partner 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-136834057-4	chr3	136833571	136834571	+	882.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 2 of 13)	intron (NM_008913, intron 2 of 13)	164005.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-101871368-4	chr2	101870845	101871845	+	882.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	11682.0	NM_001355625	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	6.0	12.0	1.0	0.0	3.5	2.0
Merged-chr4-130663792-4	chr4	130663380	130664380	+	882.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356566, intron 1 of 17)	CpG	523.0	NM_001356564	80912.0	Mm.440206	NM_030722	ENSMUSG00000028580	Pum1	AA517475|Pumm|mKIAA0099	pumilio RNA-binding family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70737625-2	chr17	70737125	70738125	+	882.7999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	109152.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91623243-4	chr16	91622747	91623747	+	882.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357351, intron 19 of 21)	intron (NM_001357351, intron 19 of 21)	-4248.0	NM_138664	246738.0	Mm.101927	NM_138664	ENSMUSG00000039763	Dnajc28	BC020175|ORF28	DnaJ heat shock protein family (Hsp40) member C28	protein-coding	0.0	8.0	2.0	0.0	1.0	0.0
Merged-chr18-61549016-4	chr18	61548512	61549512	+	882.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6261.0	NM_001357499	93687.0	Mm.26908	NM_146087	ENSMUSG00000024576	Csnk1a1	2610208K14Rik|4632404G05Rik|5430427P18Rik|CK1a|Csnk1a	casein kinase 1, alpha 1	protein-coding	0.5	0.0	2.5	0.0	2.0	0.0
Merged-chr14-57740869-4	chr14	57740363	57741363	+	882.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015771, intron 1 of 7)	intron (NM_015771, intron 1 of 7)	5260.0	NM_015771	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88252893-7	chr1	88252303	88253303	+	882.7738039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 31 of 41)	intron (NM_001281466, intron 31 of 41)	16605.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6586833-4	chr11	6586330	6587330	+	882.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146014, intron 4 of 9)	ORR1G|LTR|ERVL-MaLR	19224.0	NM_001081652	192950.0	Mm.337771	NM_001081652	ENSMUSG00000041073	Nacad	D230024G13Rik|mKIAA0363	NAC alpha domain containing	protein-coding	0.5	0.0	1.0	0.0	5.5	1.5
Merged-chr13-23426994-3	chr13	23426456	23427456	+	882.7666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3090.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-83812165-4	chr3	83811657	83812657	+	882.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29451.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59387362-4	chr2	59386860	59387860	+	882.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040510)	promoter-TSS (NR_040510)	-678.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102450842-2	chr2	102450342	102451342	+	882.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_010218, exon 1 of 1)	exon (NM_010218, exon 1 of 1)	950.0	NM_010218	14221.0	Mm.29730	NM_010218	ENSMUSG00000075012	Fjx1	-	four jointed box 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73528581-4	chr7	73528082	73529082	+	882.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	13164.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37778887-4	chr13	37778409	37779409	+	882.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-47129.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-40479919-4	chr6	40479421	40480421	+	882.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212468, intron 6 of 6)	intron (NM_212468, intron 6 of 6)	8453.0	NM_001286663	381760.0	Mm.276356	NM_028358	ENSMUSG00000029911	Ssbp1	2810480P10Rik|G630031O20Rik|MtSSB|mtDBP	single-stranded DNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51908355-4	chr13	51907867	51908867	+	882.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61692.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65376011-2	chr9	65375511	65376511	+	882.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111145, intron 4 of 6)	B2_Mm1a|SINE|B2	14951.0	NM_001111145	208080.0	Mm.291862	NM_001111145	ENSMUSG00000086228	Ubap1l	Gm514	ubiquitin-associated protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166185603-4	chr2	166185100	166186100	+	882.7374880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29917.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.0	0.5	0.0	0.0	0.5	0.0
Merged-chr10-118049520-3	chr10	118049023	118050023	+	882.7333369999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92264.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	17.0	42.5	48.5	3.5	32.5	18.0
Merged-chr16-31070941-4	chr16	31070361	31071361	+	882.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 1 of 3)	intron (NM_198626, intron 1 of 3)	10571.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	8.0	19.0	18.5	6.5	7.0	3.5
Merged-chr1-171222031-2	chr1	171221529	171222529	+	882.724976	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001037170, exon 2 of 10)	5' UTR (NM_001037170, exon 2 of 10)	465.0	NM_001305585	11807.0	Mm.389209	NM_013474	ENSMUSG00000005681	Apoa2	Alp-2|Apo-AII|ApoA-II|ApoAII|Apoa-2|Hdl-1	apolipoprotein A-II	protein-coding	2.5	22.0	10.0	24.0	33.0	8.0
Merged-chr9-118737348-3	chr9	118736857	118737857	+	882.711121	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	25665.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.0	0.0	3.5	0.0	8.5	3.0
Merged-chr2-6284889-4	chr2	6284368	6285368	+	882.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 4 of 6)	intron (NR_040333, intron 4 of 6)	-37889.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	16.5	10.0	9.0	1.0	7.0	3.5
Merged-chr15-99904575-4	chr15	99904070	99905070	+	882.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27088.0	NM_028180	72277.0	Mm.272766	NM_028180	ENSMUSG00000045350	1700030F18Rik	FAM186A	RIKEN cDNA 1700030F18 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-100288636-3	chr6	100288196	100289196	+	882.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1338.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-33540221-3	chr6	33539740	33540740	+	882.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 9 of 17)	intron (NM_009148, intron 9 of 17)	291112.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46432470-3	chr8	46431974	46432974	+	882.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38563.0	NM_007981	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-123294091-3	chr7	123293519	123294519	+	882.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122641, intron 16 of 18)	intron (NM_001122641, intron 16 of 18)	75896.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-19807575-3	chr14	19807061	19808061	+	882.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008695, intron 17 of 20)	MLT1F2|LTR|ERVL-MaLR	16262.0	NM_026528	68045.0	Mm.21932	NM_026528	ENSMUSG00000021807	Rtraf	2700060E02Rik	RNA transcription, translation and transport factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-135237523-3	chr6	135237045	135238045	+	882.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010352, exon 7 of 7)	exon (NM_010352, exon 7 of 7)	10339.0	NM_001080552	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	1.5	5.0	0.0	0.0	8.5	0.0
Merged-chr17-35418818-2	chr17	35418317	35419317	+	882.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	-6030.0	NM_023124	15019.0	Mm.486287	NM_023124		H2-Q8	H-2Q8|MMS10-T|Ms10t|Qa-2|Qa-8|Qa8	histocompatibility 2, Q region locus 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45091127-2	chr2	45090627	45091627	+	882.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	19150.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-11696611-2	chr18	11696111	11697111	+	882.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081223, intron 5 of 18)	B1F|SINE|Alu	39262.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6792294-2	chr4	6791794	6792794	+	882.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145711, intron 3 of 8)	intron (NM_145711, intron 3 of 8)	198429.0	NM_145711	252838.0	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146080267-2	chr6	146079767	146080767	+	882.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146145.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95853101-4	chr9	95852602	95853602	+	882.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4415.0	NR_073361	73410.0	Mm.443314	NM_028533	ENSMUSG00000096655	1700065D16Rik	-	RIKEN cDNA 1700065D16 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125425953-6	chr6	125425464	125426464	+	882.638916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-45460.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-80969667-4	chr8	80969187	80970187	+	882.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	45219.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	10.5	42.5	15.5	8.0	31.0	14.5
Merged-chr11-46275506-4	chr11	46275008	46276008	+	882.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252459, intron 8 of 30)	intron (NM_001252459, intron 8 of 30)	36850.0	NM_001252460	76884.0	Mm.154358	NM_133769	ENSMUSG00000020340	Cyfip2	1500004I01Rik|6430511D02Rik|AA930218|AU022376|Pir121|mKIAA1168	cytoplasmic FMR1 interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131502719-4	chr2	131502229	131503229	+	882.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177840, intron 1 of 3)	intron (NM_001177840, intron 1 of 3)	10867.0	NM_001177838	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155391704-4	chr1	155391211	155392211	+	882.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011273, intron 1 of 14)	MTEa|LTR|ERVL-MaLR	25733.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-109629003-4	chr7	109628509	109629509	+	882.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11862.0	NM_029811	76954.0	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6733227-4	chr15	6732780	6733780	+	882.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030168, intron 2 of 37)	intron (NM_030168, intron 2 of 37)	24899.0	NM_030168	78757.0	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43741996-2	chr4	43741502	43742502	+	882.625	f0_balb.idr|f1_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-9857.0	NR_040667	319973.0	Mm.233955	NR_040667		A630077J23Rik	-	RIKEN cDNA A630077J23 gene	ncRNA	14.5	37.5	42.5	35.5	87.5	80.0
Merged-chr17-50512411-4	chr17	50511900	50512900	+	882.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	2853.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	13.5	47.0	14.0	1.5	28.5	20.5
Merged-chr2-72853407-4	chr2	72852907	72853907	+	882.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39690.0	NR_102349	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-51803458-4	chr15	51802986	51803986	+	882.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080635, intron 2 of 7)	intron (NM_080635, intron 2 of 7)	61975.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-79629631-2	chr1	79629131	79630131	+	882.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_183027, intron 1 of 4)	intron (NM_183027, intron 1 of 4)	42341.0	NM_183027	252903.0	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117810147-4	chr11	117809640	117810640	+	882.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009304, intron 1 of 3)	CpG	473.0	NM_009304	20973.0	Mm.468228	NM_009304	ENSMUSG00000048277	Syngr2	Clast2|cellugyrin	synaptogyrin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-166154344-4	chr1	166153852	166154852	+	882.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360926)	TTS (NM_001360926)	24131.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184606083-4	chr1	184605586	184606586	+	882.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48395.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55051575-3	chr1	55051079	55052079	+	882.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-1191.0	NM_026424	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	23.5	43.0	31.0	20.0	79.5	23.5
Merged-chr6-97402723-4	chr6	97402243	97403243	+	882.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	56543.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36079851-4	chr1	36079358	36080358	+	882.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	11458.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-50056261-4	chr18	50055723	50056723	+	882.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134131, intron 1 of 1)	intron (NM_134131, intron 1 of 1)	-2561.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	44.5	75.0	56.0	20.5	16.0	18.0
Merged-chr12-33281033-2	chr12	33280532	33281532	+	882.541626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-21483.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.0	0.0	1.5	0.0	0.0	1.0
Merged-chr15-102243986-4	chr15	102243473	102244473	+	882.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011244, intron 3 of 9)	intron (NM_011244, intron 3 of 9)	2527.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55446788-4	chr11	55446301	55447301	+	882.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 3 of 3)	intron (NM_009720, intron 3 of 3)	14407.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-93555310-4	chr3	93554779	93555779	+	882.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009112, intron 1 of 2)	CpG	162.0	NM_009112	20194.0	Mm.1	NM_009112	ENSMUSG00000041959	S100a10	42C|AA409961|AL024248|CAL12|CLP11|Cal1l|p10|p11	S100 calcium binding protein A10 (calpactin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30596012-7	chr14	30595541	30596541	+	882.5238039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 17 of 17)	intron (NM_011103, intron 17 of 17)	14269.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	8.5	10.0	12.5	8.5	13.0	7.0
Merged-chr2-157129987-4	chr2	157129461	157130461	+	882.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139520, intron 1 of 16)	intron (NM_001139520, intron 1 of 16)	5261.0	NM_001139520	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101969046-4	chr11	101968548	101969548	+	882.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2033.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-37958330-2	chr18	37957830	37958830	+	882.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_153793, exon 6 of 8)	exon (NM_153793, exon 6 of 8)	2771.0	NM_153793	225392.0	Mm.233516	NM_153793	ENSMUSG00000044024	Rell2	4631403P03Rik|ependolin	RELT-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41620974-4	chr10	41620479	41621479	+	882.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 23 of 47)	intron (NM_001358562, intron 23 of 47)	52963.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27987860-2	chr3	27987360	27988360	+	882.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 1 of 25)	intron (NM_008875, intron 1 of 25)	3689.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123612646-2	chr4	123612146	123613146	+	882.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-3774.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-42527846-2	chr13	42527346	42528346	+	882.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-152953.0	NM_001302635	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69260933-4	chr11	69260416	69261416	+	882.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23894.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-41740880-2	chr3	41740380	41741380	+	882.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_155540, intron 1 of 20)	intron (NR_155540, intron 1 of 20)	1634.0	NR_155540	67161.0	Mm.331001	NM_001081411	ENSMUSG00000059834	Sclt1	2610207F23Rik|4931421F20Rik|CAGGS-SB10|Tg(ACTB-sb10)1Dla|Tg(CAG-sb10)1Dla	sodium channel and clathrin linker 1	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr2-35176081-2	chr2	35175581	35176581	+	882.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_012018, intron 41 of 43)	intron (NM_012018, intron 41 of 43)	25039.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22813169-3	chr11	22812672	22813672	+	882.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46563.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63759328-2	chr9	63758828	63759828	+	882.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1334.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-174434285-2	chr2	174433785	174434785	+	882.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022325, intron 2 of 5)	intron (NM_022325, intron 2 of 5)	4754.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33514060-2	chr16	33513560	33514560	+	882.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4269.0	NM_134251	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137863122-3	chr4	137862608	137863608	+	882.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	871.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	12.0	12.5	6.5	3.0	3.0	5.5
Merged-chr14-73170088-4	chr14	73169590	73170590	+	882.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134083, intron 10 of 14)	intron (NM_134083, intron 10 of 14)	27305.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134543840-2	chr6	134543340	134544340	+	882.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 1 of 22)	intron (NM_008514, intron 1 of 22)	23073.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	17.5	21.5	58.0	7.0	28.5	16.5
Merged-chr4-143119088-4	chr4	143118606	143119606	+	882.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081355, intron 8 of 9)	intron (NM_001081355, intron 8 of 9)	17056.0	NR_105988	102465618.0		NR_105988	ENSMUSG00000106597	Mir7021	mmu-mir-7021	microRNA 7021	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31834373-2	chr16	31833873	31834873	+	882.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357281, intron 11 of 22)	intron (NM_001357281, intron 11 of 22)	-44437.0	NM_013900	30060.0	Mm.30988	NM_013900	ENSMUSG00000022780	Meltf	CD228|MTf|Mfi2	melanotransferrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58982224-3	chr11	58981684	58982684	+	882.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290988, exon 3 of 7)	exon (NM_001290988, exon 3 of 7)	4091.0	NM_053168	94091.0	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	0.0	6.5	1.5	0.0	1.5	1.5
Merged-chr10-67024917-2	chr10	67024417	67025417	+	882.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_110511, intron 2 of 6)	B3|SINE|B2	19842.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-114741234-2	chr9	114740728	114741728	+	882.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026036, intron 3 of 3)	B1F|SINE|Alu	10025.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	10.0	2.0	4.5	2.5	2.0	3.5
Merged-chr4-132074215-3	chr4	132073729	132074729	+	882.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128607, intron 1 of 17)	intron (NM_001128607, intron 1 of 17)	1084.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85562893-2	chr12	85562399	85563399	+	882.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-36206.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56996774-2	chr17	56996274	56997274	+	882.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025538)	promoter-TSS (NM_025538)	-565.0	NM_025538	66400.0	Mm.196150	NM_025538	ENSMUSG00000002661	Alkbh7	2310045B01Rik|2510008E23Rik|Abh7|Spata11	alkB homolog 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31223832-2	chr15	31223332	31224332	+	882.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146057)	promoter-TSS (NM_146057)	-553.0	NM_146057	223453.0	Mm.222867	NM_146057	ENSMUSG00000039168	Dap	4921531N22Rik|AI789753|AU040360	death-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45115798-2	chr7	45115298	45116298	+	882.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5959.0	NR_029560	387168.0		NR_029560	ENSMUSG00000065495	Mir150	Mirn150|mir-150|mmu-mir-150	microRNA 150	ncRNA	0.0	2.5	2.0	1.0	3.0	1.5
Merged-chr13-52603893-2	chr13	52603393	52604393	+	882.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 1 of 13)	intron (NM_011518, intron 1 of 13)	7011.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29022538-3	chr17	29022044	29023044	+	882.4722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10116.0	NM_013663	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33986589-4	chr2	33986087	33987087	+	882.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98641.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124863724-3	chr6	124863230	124864230	+	882.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013488)	TTS (NM_013488)	253.0	NM_013533	14788.0	Mm.2514	NM_013533	ENSMUSG00000038390	Gpr162	A-2|BC031437|Grca	G protein-coupled receptor 162	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120332843-4	chr8	120332339	120333339	+	882.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104609.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67542722-4	chr18	67542234	67543234	+	882.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194355, intron 2 of 14)	intron (NM_194355, intron 2 of 14)	6439.0	NM_176832	68166.0	Mm.208723	NM_176832	ENSMUSG00000024533	Spire1	6030430B19Rik|AI415299|AU022898|AW550622|Spir-1	spire type actin nucleation factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-115330001-2	chr10	115329501	115330501	+	882.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-14410.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-125272203-4	chr10	125271721	125272721	+	882.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 3 of 5)	intron (NM_001358496, intron 3 of 5)	36595.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88504654-4	chr10	88504145	88505145	+	882.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146690)	promoter-TSS (NM_001146690)	-675.0	NM_001146690	212862.0	Mm.288897	NM_144807	ENSMUSG00000060002	Chpt1	-	choline phosphotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172455505-4	chr1	172455022	172456022	+	882.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19838.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	11.0	25.5	58.5	29.5	63.0	47.5
Merged-chr2-4890604-3	chr2	4890105	4891105	+	882.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175400, intron 3 of 8)	intron (NM_175400, intron 3 of 8)	9041.0	NM_175400	109079.0	Mm.34329	NM_175400	ENSMUSG00000026662	Sephs1	1110046B24Rik|AA589574|AI505014|AW111620|SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43443284-10	chr4	43442768	43443768	+	882.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011571, exon 1 of 10)	5' UTR (NM_011571, exon 1 of 10)	991.0	NM_011571	21754.0	Mm.485441	NM_011571	ENSMUSG00000028458	Tesk1	AI326901	testis specific protein kinase 1	protein-coding	23.5	58.5	37.5	16.0	50.0	42.5
Merged-chr4-155736161-3	chr4	155735641	155736641	+	882.3777470000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101506, intron 2 of 3)	intron (NM_001101506, intron 2 of 3)	1337.0	NM_001101506	381582.0	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	1.0	0.0	0.5	5.0	0.0	0.0
Merged-chr8-126881285-4	chr8	126880834	126881834	+	882.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	32314.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-117490881-4	chr7	117490376	117491376	+	882.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175645, intron 2 of 11)	intron (NM_175645, intron 2 of 11)	109897.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-69307216-6	chr10	69306682	69307682	+	882.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45730.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13874981-4	chr8	13874476	13875476	+	882.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181854, intron 1 of 1)	PB1|SINE|Alu	5335.0	NM_181854	101994.0	Mm.289346	NM_181854	ENSMUSG00000047710	Champ1	AA675043|AI116001|D8Ertd457e|D8Ertd569e|Zfp828|Znf828|mKIAA1802	chromosome alignment maintaining phosphoprotein 1	protein-coding	1.0	11.5	8.5	9.0	10.5	9.5
Merged-chr8-71633865-2	chr8	71633365	71634365	+	882.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 39 of 41)	intron (NM_001029873, intron 39 of 41)	-2759.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	3.5	1.0	0.0	1.5	1.0	3.0
Merged-chr2-5655322-3	chr2	5654810	5655810	+	882.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	MTC|LTR|ERVL-MaLR	20736.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0.0	0.0	0.0	4.5	1.0	1.0
Merged-chr13-51845192-3	chr13	51844704	51845704	+	882.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1471.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-65567452-3	chr16	65566909	65567909	+	882.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-4712.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20857304-3	chr9	20856801	20857801	+	882.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11341.0	NM_175687	319278.0	Mm.249932	NM_175687	ENSMUSG00000038884	A230050P20Rik	RyDEN	RIKEN cDNA A230050P20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46202382-3	chr4	46201860	46202860	+	882.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAC)n|Simple_repeat|Simple_repeat	-6049.0	NM_011728	22590.0	Mm.247036	NM_011728	ENSMUSG00000028329	Xpa	AI573865|Xpac	xeroderma pigmentosum, complementation group A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170937265-4	chr1	170936763	170937763	+	882.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12BD_Mm|LTR|ERVK	-9680.0	NM_001160215	98752.0	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141538003-4	chr4	141537408	141538408	+	882.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347235, intron 1 of 14)	CpG	689.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	13.0	53.0	38.0	16.0	41.0	32.5
Merged-chr4-135874643-3	chr4	135874161	135875161	+	882.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026383)	promoter-TSS (NM_026383)	-815.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	24.0	29.5	41.0	19.0	41.0	48.0
Merged-chr1-176819508-3	chr1	176819000	176820000	+	882.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 1 of 18)	intron (NM_001357390, intron 1 of 18)	4840.0	NM_029756	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	11.0	16.0	7.5	0.0	4.0	1.0
Merged-chr5-23617100-4	chr5	23616604	23617604	+	882.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009274)	promoter-TSS (NM_009274)	-533.0	NM_009274	20817.0	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	34.5	96.0	75.0	66.5	76.5	74.0
Merged-chr2-13538944-4	chr2	13538423	13539423	+	882.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010067, intron 1 of 10)	intron (NM_010067, intron 1 of 10)	5741.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52962581-3	chr13	52962091	52963091	+	882.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	18448.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	1.0	3.5	5.0	6.5	9.0	4.0
Merged-chr19-60731087-3	chr19	60730583	60731583	+	882.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24904.0	NM_178421	332397.0	Mm.186390	NM_178421	ENSMUSG00000072437	Nanos1	NOS-1	nanos C2HC-type zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr3-51960384-2	chr3	51959878	51960878	+	882.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	B3A|SINE|B2	144628.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-75049296-4	chr9	75048809	75049809	+	882.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357880, intron 2 of 3)	intron (NM_001357880, intron 2 of 3)	11577.0	NM_021548	59046.0	Mm.247837	NM_021548	ENSMUSG00000007656	Arpp19	19kDa|2700024H10Rik|ARPP-19|AW559096|Arpp12	cAMP-regulated phosphoprotein 19	protein-coding	1.0	11.5	5.5	0.5	11.0	6.0
Merged-chr8-94227486-4	chr8	94226992	94227992	+	882.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172410, intron 2 of 22)	intron (NM_172410, intron 2 of 22)	12928.0	NM_172410	71805.0	Mm.458170	NM_172410	ENSMUSG00000032939	Nup93	2410008G02Rik	nucleoporin 93	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122015232-2	chr14	122014882	122015882	+	882.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 8 of 8)	intron (NM_026861, intron 8 of 8)	-19292.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	2.0	0.0	0.5	3.0	1.0	1.0
Merged-chr12-119470450-4	chr12	119469938	119470938	+	882.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	27028.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-117438300-4	chr6	117437792	117438792	+	882.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56943.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24598753-4	chr5	24598244	24599244	+	882.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025891, exon 2 of 13)	exon (NM_025891, exon 2 of 13)	3258.0	NM_025891	66993.0	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41933060-4	chr10	41932604	41933604	+	882.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 12 of 17)	intron (NM_001034858, intron 12 of 17)	45665.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135516502-4	chr1	135516049	135517049	+	882.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173437, intron 3 of 28)	intron (NM_173437, intron 3 of 28)	-61866.0	NR_049188	100885827.0		NR_049188	ENSMUSG00000093515	Mir1231	Gm23720|mir-1231|mmu-mir-1231	microRNA 1231	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-59195265-3	chr12	59194713	59195713	+	882.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24270.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	0.0	14.0	6.5	0.0	14.0	6.5
Merged-chr13-48981235-4	chr13	48980724	48981724	+	882.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13112.0	NR_015601	68128.0	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21852121-4	chr14	21851425	21852425	+	882.2083130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176925, intron 2 of 2)	intron (NM_176925, intron 2 of 2)	-3015.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	3.5	0.0	8.0	5.5	33.5	10.5
Merged-chr11-43451493-4	chr11	43450986	43451986	+	882.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A|LTR|ERVK	17755.0	NM_198936	193116.0	Mm.28200	NM_148673	ENSMUSG00000020409	Slu7	AU018913|D11Ertd730e|D3Bwg0878e	SLU7 splicing factor homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95867295-3	chr4	95866783	95867783	+	882.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113412, intron 14 of 15)	MIRb|SINE|MIR	99752.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	0.0	4.5	0.0	0.0	1.5	1.5
Merged-chr17-79095832-4	chr17	79095356	79096356	+	882.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16D|LTR|ERVL	43950.0	NM_001316729	70536.0	Mm.293870	NM_027455	ENSMUSG00000024084	Qpct	5730422A13Rik	glutaminyl-peptide cyclotransferase (glutaminyl cyclase)	protein-coding	35.0	0.0	9.5	9.5	9.5	1.0
Merged-chr8-83201152-4	chr8	83200650	83201650	+	882.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111304, intron 1 of 20)	(TTTTTA)n|Simple_repeat|Simple_repeat	35798.0	NM_027758	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	70.0	116.0	117.5	70.0	95.0	54.5
Merged-chr12-20231049-2	chr12	20230542	20231542	+	882.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	584737.0	NR_015521	69513.0	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-41170163-4	chr9	41169657	41170657	+	882.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12095.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	12.5	3.0	3.0	2.0	0.0	3.0
Merged-chr19-53143336-4	chr19	53142842	53143842	+	882.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013758)	promoter-TSS (NM_013758)	586.0	NM_001164100	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81027806-4	chr15	81027273	81028273	+	882.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 3 of 13)	intron (NM_001082536, intron 3 of 13)	50008.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-60290541-4	chr14	60290051	60291051	+	882.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144843, intron 6 of 13)	intron (NM_144843, intron 6 of 13)	25346.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	18.5	32.0	27.5	12.5	32.0	37.0
Merged-chr5-130163879-3	chr5	130163371	130164371	+	882.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	-7948.0	NM_001199059	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139732999-4	chr5	139732517	139733517	+	882.1083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174850, intron 1 of 16)	intron (NM_174850, intron 1 of 16)	3316.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	7.0	24.0	29.0	7.0	19.5	22.5
Merged-chr10-81415568-5	chr10	81415053	81416053	+	882.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_106141)	TTS (NR_106141)	744.0	NR_106141	102465778.0		NR_106141	ENSMUSG00000105379	Mir1191b	mmu-mir-1191b	microRNA 1191b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32952578-4	chr19	32952073	32953073	+	882.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	194996.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120036410-4	chr2	120035929	120036929	+	882.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_104353, exon 15 of 27)	non-coding (NR_104353, exon 15 of 27)	2996.0	NM_145378	211429.0	Mm.41467	NM_145378	ENSMUSG00000098488	Pla2g4b	A030011C02Rik|Gm1013|cPLA2-beta	phospholipase A2, group IVB (cytosolic)	protein-coding	2.5	12.0	5.0	12.0	1.0	1.0
Merged-chr17-34556414-4	chr17	34555907	34556907	+	882.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7888.0	NM_010929	18132.0	Mm.173813	NM_010929	ENSMUSG00000015468	Notch4	Int-3|Int3|N4	notch 4	protein-coding	6.0	4.5	10.5	3.0	9.0	10.5
Merged-chr5-102071388-4	chr5	102070852	102071852	+	882.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1431.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38469371-4	chr2	38468892	38469892	+	882.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42305.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-23180225-4	chr10	23179723	23180723	+	882.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010167, intron 3 of 18)	intron (NM_010167, intron 3 of 18)	169667.0	NM_001347372	14051.0	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	0.0	7.5	1.0	0.0	2.0	0.0
Merged-chr2-30135451-4	chr2	30134967	30135967	+	882.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146252, intron 2 of 11)	intron (NM_146252, intron 2 of 11)	1721.0	NM_146252	70296.0	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37489867-4	chr9	37489375	37490375	+	882.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146222, intron 1 of 3)	CpG	554.0	NM_146222	235184.0	Mm.127892	NM_146222	ENSMUSG00000042138	Msantd2	2810450G17Rik|9530092B10Rik	Myb/SANT-like DNA-binding domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181410869-4	chr2	181410364	181411364	+	882.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028125, exon 3 of 3)	3' UTR (NM_028125, exon 3 of 3)	13524.0	NM_027656	72147.0	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-99969395-2	chr1	99968895	99969895	+	882.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172851, intron 3 of 23)	RLTR1D2_MM|LTR|ERV1	196630.0	NM_172851	241175.0	Mm.251301	NM_172851	ENSMUSG00000067028	Cntnap5b	C230078M14Rik|Caspr5-2	contactin associated protein-like 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-45698287-4	chr11	45697802	45698802	+	882.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109781.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	3.0	23.0	25.0	7.5	35.0	18.5
Merged-chr5-74955659-2	chr5	74955159	74956159	+	882.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045866, intron 1 of 4)	intron (NR_045866, intron 1 of 4)	6465.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156866156-2	chr2	156865656	156866656	+	882.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026124, intron 2 of 3)	intron (NM_026124, intron 2 of 3)	3034.0	NM_026124	67388.0	Mm.29264	NM_026124	ENSMUSG00000027637	1110008F13Rik	AI316789	RIKEN cDNA 1110008F13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171387309-1	chr1	171386809	171387809	+	882.0	f1_balb.idr	3' UTR (NM_027893, exon 9 of 9)	3' UTR (NM_027893, exon 9 of 9)	-1651.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	2.0	3.5	2.5	1.5	9.5	10.0
Merged-chr10-128015206-2	chr10	128014706	128015706	+	882.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008921)	promoter-TSS (NM_008921)	-9.0	NM_008921	19075.0	Mm.2903	NM_008921	ENSMUSG00000025395	Prim1	AI324982	DNA primase, p49 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-133685966-4	chr1	133685465	133686465	+	882.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159649, intron 2 of 5)	intron (NM_001159649, intron 2 of 5)	4051.0	NM_172842	240754.0	Mm.36534	NM_172842	ENSMUSG00000051998	Lax1	A530029E09|E430019B13Rik	lymphocyte transmembrane adaptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83161872-2	chr6	83161372	83162372	+	882.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027948, exon 4 of 4)	exon (NM_027948, exon 4 of 4)	-4052.0	NM_001198866	13191.0	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150<glued>	dynactin 1	protein-coding	3.0	4.5	5.0	5.5	0.0	5.5
Merged-chr10-122753586-3	chr10	122753076	122754076	+	882.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	74261.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68916330-3	chr10	68915827	68916827	+	882.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	192581.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38351007-3	chr2	38350515	38351515	+	882.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010710)	promoter-TSS (NM_010710)	-293.0	NM_010710	16870.0	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53043985-2	chr4	53043485	53044485	+	882.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 40 of 49)	intron (NM_013454, intron 40 of 49)	32105.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75085484-2	chr8	75084984	75085984	+	882.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-8134.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-153616068-2	chr3	153615568	153616568	+	882.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 1 of 4)	intron (NM_011372, intron 1 of 4)	109065.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6933464-2	chr19	6932964	6933964	+	882.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008431, intron 1 of 6)	intron (NM_008431, intron 1 of 6)	1051.0	NM_008431	16528.0	Mm.12894	NM_008431	ENSMUSG00000024957	Kcnk4	Catsperz|MLZ-622|TRAAK|TRAAKt|Tex40	potassium channel, subfamily K, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94385130-2	chr8	94384630	94385630	+	882.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-1299.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-24101277-2	chr1	24100823	24101823	+	882.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026604)	promoter-TSS (NM_026604)	-982.0	NM_026604	68187.0	Mm.87130	NM_026604	ENSMUSG00000026153	Fam135a	4921533L14Rik|AI256732|AI835491	family with sequence similarity 135, member A	protein-coding	0.0	1.5	5.0	1.0	0.0	2.0
Merged-chr3-88244305-3	chr3	88243806	88244806	+	882.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021375, intron 8 of 9)	intron (NM_021375, intron 8 of 9)	10378.0	NM_021375	58176.0	Mm.103777	NM_021375	ENSMUSG00000104445	Rhbg	-	Rhesus blood group-associated B glycoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108899460-2	chr3	108898960	108899960	+	882.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-9452.0	NM_001165965	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	4.0	35.0	23.5	5.5	33.0	24.5
Merged-chr8-39427465-2	chr8	39426962	39427962	+	882.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	129482.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	2.0	8.5	1.5	27.5	15.5	28.5
Merged-chr2-60282079-3	chr2	60281567	60282567	+	882.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025422, intron 1 of 4)	B4A|SINE|B4	2417.0	NM_025422	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132512481-2	chr4	132511981	132512981	+	882.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2025.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	3.0	4.5	0.0	3.5	4.5	0.0
Merged-chr2-104110699-2	chr2	104110199	104111199	+	882.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007652, intron 2 of 3)	intron (NM_007652, intron 2 of 3)	-12070.0	NM_026634	68243.0	Mm.158191	NM_026634	ENSMUSG00000032671	A930018P22Rik	-	RIKEN cDNA A930018P22 gene	protein-coding	0.0	3.0	1.5	0.0	2.0	3.5
Merged-chr2-73572610-4	chr2	73572111	73573111	+	882.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007389, intron 4 of 8)	intron (NM_007389, intron 4 of 8)	7727.0	NM_007389	11435.0	Mm.4583	NM_007389	ENSMUSG00000027107	Chrna1	AI385656|AI608266|Achr-1|Acra	cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80691854-2	chr10	80691354	80692354	+	882.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	9966.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-29445284-4	chr10	29444786	29445786	+	882.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82844.0	NM_001110197	68031.0	Mm.28930	NM_026518	ENSMUSG00000038876	Rnf146	2610509H23Rik|Iduna	ring finger protein 146	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5601921-4	chr19	5601470	5602470	+	882.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026616)	promoter-TSS (NM_026616)	97.0	NM_026616	68209.0	Mm.246200	NM_026616	ENSMUSG00000024925	Rnaseh2c	1500026D16Rik|AYP1	ribonuclease H2, subunit C	protein-coding	18.0	30.0	37.5	16.0	37.0	25.5
Merged-chr10-62234541-2	chr10	62234041	62235041	+	882.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3323.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43464263-2	chr1	43463763	43464763	+	882.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	MIRb|SINE|MIR	18512.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80299724-4	chr7	80299219	80300219	+	882.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145150, intron 1 of 13)	intron (NM_145150, intron 1 of 13)	5268.0	NM_001285998	233406.0	Mm.227274	NM_145150	ENSMUSG00000038943	Prc1	D7Ertd348e	protein regulator of cytokinesis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109063202-3	chr3	109062709	109063709	+	882.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17290.0	NM_029054	74686.0	Mm.307948	NM_029054	ENSMUSG00000027880	Slc25a54	4930443G12Rik|SCaMC-1like	solute carrier family 25, member 54	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19230935-2	chr7	19230435	19231435	+	882.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207525, intron 1 of 1)	intron (NM_207525, intron 1 of 1)	2546.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106135131-2	chr8	106134631	106135631	+	882.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040344)	promoter-TSS (NR_040344)	-269.0	NR_040345	69771.0	Mm.393274	NR_040344		1810019D21Rik	-	RIKEN cDNA 1810019D21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20749594-3	chr18	20749108	20750108	+	882.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3204.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-16875016-1	chr12	16874516	16875516	+	882.0	f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-19962.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	23.5	17.5	31.0	25.0	53.0	39.5
Merged-chr2-75657451-2	chr2	75656951	75657951	+	882.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1808.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	9.5	53.0	23.0	3.5	15.0	13.5
Merged-chr15-80091278-4	chr15	80090809	80091809	+	881.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009303)	promoter-TSS (NM_009303)	-25.0	NM_009303	20972.0	Mm.230301	NM_009303	ENSMUSG00000022415	Syngr1	R75468|Syngr1b|p29	synaptogyrin 1	protein-coding	1.0	7.0	4.0	4.0	3.0	2.0
Merged-chr10-59310853-4	chr10	59310340	59311340	+	881.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12456.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34789204-4	chr19	34788714	34789714	+	881.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB7_4-LTR_MM|LTR|ERVK	31559.0	NR_029783	723826.0		NR_029783	ENSMUSG00000065594	Mir107	Mirn107|mir-107|mmu-mir-107	microRNA 107	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70911182-4	chr12	70910677	70911677	+	881.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-26680.0	NM_019785	56444.0	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119305528-3	chr11	119305038	119306038	+	881.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-5495.0	NM_138669	192170.0	Mm.197555	NM_138669	ENSMUSG00000025580	Eif4a3	2400003O03Rik|Ddx48|eIF4A-III|mKIAA0111	eukaryotic translation initiation factor 4A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37248572-3	chr9	37248063	37249063	+	881.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145960, intron 1 of 18)	intron (NM_001145960, intron 1 of 18)	7175.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100712454-4	chr11	100711988	100712988	+	881.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020004)	promoter-TSS (NM_020004)	-21.0	NM_020004	14534.0	Mm.218837	NM_020004	ENSMUSG00000020918	Kat2a	1110051E14Rik|AW212720|Gcn5|Gcn5l2|mmGCN5	K(lysine) acetyltransferase 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103367933-3	chr15	103367443	103368443	+	881.9166869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1152.0	NM_001314041	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-142694630-4	chr2	142694135	142695135	+	881.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 23 of 26)	intron (NM_001355123, intron 23 of 26)	206829.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-140065909-2	chr2	140065409	140066409	+	881.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289611, intron 1 of 6)	B3|SINE|B2	896.0	NM_001159640	75812.0	Mm.293449	NM_175225	ENSMUSG00000039033	Tasp1	4930485D02Rik|AW986064	taspase, threonine aspartase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10177316-4	chr19	10176818	10177818	+	881.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57C2|LTR|ERV1	-5570.0	NM_146094	76267.0	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95503819-3	chr11	95503403	95504403	+	881.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10662.0	NM_130858	104079.0	Mm.22970	NM_130858	ENSMUSG00000046719	Nxph3	-	neurexophilin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155653275-3	chr4	155652763	155653763	+	881.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001320235)	promoter-TSS (NM_001320235)	27.0	NM_001320235	26561.0	Mm.29373	NM_011985	ENSMUSG00000029061	Mmp23	CA-MMP	matrix metallopeptidase 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-76633906-3	chr13	76633405	76634405	+	881.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030174, intron 1 of 20)	intron (NM_030174, intron 1 of 20)	248944.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	7.0	1.0	8.5	9.0	7.0	3.0
Merged-chr11-29870390-4	chr11	29869887	29870887	+	881.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 7 of 41)	L1M2|LINE|L1	-44719.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	3.0	32.5	14.0	0.0	31.0	18.5
Merged-chr1-51915807-4	chr1	51915262	51916262	+	881.875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001161817, exon 1 of 31)	5' UTR (NM_001161817, exon 1 of 31)	216.0	NM_001161817	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	1.0	0.5	3.5	0.5	0.0	2.0
Merged-chr5-41563604-4	chr5	41563114	41564114	+	881.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	144077.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	2.5	2.5	2.5	0.0	0.0	0.0
Merged-chr1-138559973-3	chr1	138559467	138560467	+	881.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 2 of 9)	intron (NM_021605, intron 2 of 9)	59790.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18235077-6	chr16	18234504	18235504	+	881.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172151, exon 1 of 11)	exon (NM_172151, exon 1 of 11)	132.0	NM_172151	27801.0	Mm.326263	NM_172151	ENSMUSG00000060166	Zdhhc8	D16H22S1738E|DHHC-8|E330009O14Rik|Op53c05|ZDHHCL1	zinc finger, DHHC domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-17051740-6	chr11	17051240	17052240	+	881.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029861)	promoter-TSS (NM_029861)	-194.0	NM_029861	380686.0	Mm.425666	NM_029861	ENSMUSG00000044629	Cnrip1	1500041B16Rik|3110054C06Rik|5330437A18Rik|AI854501|C2orf32	cannabinoid receptor interacting protein 1	protein-coding	0.0	2.5	8.5	0.5	3.0	3.5
Merged-chr2-158379922-4	chr2	158379418	158380418	+	881.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175692, intron 3 of 4)	B2_Mm2|SINE|B2	4280.0	NM_175692	319317.0	Mm.294494	NM_175692	ENSMUSG00000044349	Snhg11	A930034L06Rik|AI854265|AL022637|AW319638|E130013N09Rik	small nucleolar RNA host gene 11	protein-coding	1.5	7.0	0.0	0.0	0.0	0.5
Merged-chr10-13323441-4	chr10	13322917	13323917	+	881.854126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	872.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98534690-4	chr7	98534203	98535203	+	881.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40481.0	NM_001113379	434215.0	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	0.0	0.0	12.5	6.0	1.5	0.0
Merged-chr11-44425942-3	chr11	44425413	44426413	+	881.833374	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25850.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	0.0	0.0	0.5	1.0	0.0	0.0
Merged-chr2-150914364-3	chr2	150913886	150914886	+	881.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027014, intron 2 of 6)	intron (NM_027014, intron 2 of 6)	4792.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116808407-3	chr11	116807881	116808881	+	881.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347633, intron 4 of 4)	intron (NM_001347633, intron 4 of 4)	19665.0	NM_026280	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	5.5	0.0	0.0	3.0	5.0	1.0
Merged-chr15-59800436-3	chr15	59799927	59800927	+	881.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-5468.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.0	4.5	1.0	1.0	4.0	2.5
Merged-chr17-43407691-3	chr17	43407181	43408181	+	881.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357332, intron 2 of 20)	intron (NM_001357332, intron 2 of 20)	18215.0	NM_001081178	224792.0	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	1.0	0.0	1.0	8.0	0.0	0.0
Merged-chr5-139395354-2	chr5	139394854	139395854	+	881.8333130000001	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001362206, exon 2 of 2)	3' UTR (NM_001362206, exon 2 of 2)	5450.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-59977610-4	chr7	59977115	59978115	+	881.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_146211, intron 17 of 171)	(A)n|Simple_repeat|Simple_repeat	1241.0	NR_028529	100217429.0		NR_028529		Snord64	MBII-13	small nucleolar RNA, C/D box 64	snoRNA	0.0	9.5	9.0	0.0	0.0	0.0
Merged-chr13-30696552-3	chr13	30696029	30697029	+	881.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134068, intron 4 of 7)	intron (NM_134068, intron 4 of 7)	36470.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61020127-3	chr9	61019617	61020617	+	881.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040767)	TTS (NR_040767)	3048.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91441848-4	chr2	91441370	91442370	+	881.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175123, intron 1 of 8)	intron (NM_175123, intron 1 of 8)	2844.0	NM_001311144	228356.0	Mm.386861	NM_175123	ENSMUSG00000040591	1110051M20Rik	AI586322	RIKEN cDNA 1110051M20 gene	protein-coding	0.5	0.0	12.5	4.5	0.0	2.5
Merged-chr8-22708060-4	chr8	22707577	22708577	+	881.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1494.0	NM_001159774	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71380570-4	chr8	71380064	71381064	+	881.7976070000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_010150, intron 1 of 3)	CpG	1388.0	NM_010150	13864.0	Mm.28989	NM_010150	ENSMUSG00000002393	Nr2f6	AV090102|COUP-TF3|EAR2|Erbal2	nuclear receptor subfamily 2, group F, member 6	protein-coding	0.0	2.0	2.0	0.0	3.5	6.0
Merged-chr5-86190532-4	chr5	86190050	86191050	+	881.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310653, intron 1 of 1)	ORR1C2|LTR|ERVL-MaLR	7351.0	NM_001310653	14715.0	Mm.26791	NM_010323	ENSMUSG00000029255	Gnrhr	-	gonadotropin releasing hormone receptor	protein-coding	66.5	112.5	103.5	9.0	0.5	7.0
Merged-chr13-113612614-4	chr13	113612080	113613080	+	881.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	5984.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83125119-4	chr11	83124627	83125627	+	881.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8307.0	NM_011407	20555.0	Mm.10948	NM_011407	ENSMUSG00000078763	Slfn1	AV316259	schlafen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76405480-5	chr12	76404894	76405894	+	881.783325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008301, exon 1 of 1)	exon (NM_008301, exon 1 of 1)	1024.0	NM_008301	15512.0	Mm.296181	NM_008301	ENSMUSG00000059970	Hspa2	70kDa|HSP70.2|HSP70A2|Hsp70-2	heat shock protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-36533516-3	chr3	36533010	36534010	+	881.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12065.0	NR_040411	100503068.0	Mm.389423	NR_040411	ENSMUSG00000085007	Gm11549	-	predicted gene 11549	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44461448-4	chr9	44460984	44461984	+	881.7589109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-6717.0	NM_009476	22269.0	Mm.4453	NM_009476	ENSMUSG00000041523	Upk2	AW491716|UPII	uroplakin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105032526-2	chr5	105032030	105033030	+	881.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_029509, intron 3 of 9)	RLTR13C2|LTR|ERVK	21031.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73473797-4	chr14	73473285	73474285	+	881.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-36264.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8979695-2	chr3	8979231	8980231	+	881.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	RMER1C|Other|Other	-15585.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	10.0	1.5	5.0	3.5	7.5	10.0
Merged-chr5-142911701-4	chr5	142911237	142912237	+	881.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4983.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123903097-4	chr5	123902604	123903604	+	881.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4171.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	0.0	5.0	1.5	0.5	2.0	0.5
Merged-chr14-16250817-4	chr14	16250339	16251339	+	881.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362432, intron 1 of 11)	intron (NM_001362432, intron 1 of 11)	-1031.0	NM_027695	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	6.0	7.0	8.5	2.5	0.0	0.5
Merged-chr19-45032044-3	chr19	45031549	45032549	+	881.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195265, intron 10 of 15)	intron (NM_001195265, intron 10 of 15)	13723.0	NM_001195265	100503041.0	Mm.329877	NM_177605	ENSMUSG00000074818	Pdzd7	9130207N01|EG435601|Pdzk7	PDZ domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147403472-2	chr4	147402930	147403930	+	881.7333369999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	MTD|LTR|ERVL-MaLR	-149847.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	1.5	0.0	0.5	0.0	0.0	0.0
Merged-chr15-102234063-4	chr15	102233565	102234565	+	881.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011244)	TTS (NM_011244)	-2130.0	NM_013566	16421.0	Mm.58	NM_013566	ENSMUSG00000001281	Itgb7	Ly69	integrin beta 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-83327624-3	chr4	83327089	83328089	+	881.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3400.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0.5	24.0	4.5	2.0	4.5	4.5
Merged-chr1-55821318-3	chr1	55820806	55821806	+	881.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109935.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	3.0	9.0	10.5	11.0	6.0	7.5
Merged-chr18-3983162-4	chr18	3982653	3983653	+	881.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-182679.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-41651754-4	chr7	41651224	41652224	+	881.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360680)	TTS (NM_001360680)	-16290.0	NR_004441	75835.0	Mm.159597	NM_029460	ENSMUSG00000074164	Vmn2r-ps54	1700108E19Rik|4930562N12Rik|Casr-rs5|Gm10948|Gprc2a-rs5	vomeronasal 2, receptor, pseudogene 54	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96944886-2	chr11	96944386	96945386	+	881.714294	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134021)	promoter-TSS (NM_134021)	740.0	NR_003293	319371.0	Mm.436865	NR_003293	ENSMUSG00000078700	D030028A08Rik	-	RIKEN cDNA D030028A08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83677854-4	chr6	83677364	83678364	+	881.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144943)	promoter-TSS (NM_144943)	-7.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	25.0	19.0	34.5	4.5	6.0	29.0
Merged-chr11-43613308-4	chr11	43612812	43613812	+	881.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11750.0	NM_008375	16204.0	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-55357478-4	chr18	55356975	55357975	+	881.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-364884.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	2.5	1.0	0.0	2.5	0.0
Merged-chr4-140714012-4	chr4	140713502	140714502	+	881.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173867, intron 7 of 12)	intron (NM_173867, intron 7 of 12)	12529.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	2.5	0.0	1.0	0.0	0.5	2.0
Merged-chr4-149858727-3	chr4	149858205	149859205	+	881.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84438.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	2.0	3.5	0.5	1.0	0.0	0.0
Merged-chr2-18975440-3	chr2	18974940	18975940	+	881.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	22681.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135579363-1	chr3	135578863	135579863	+	881.6666869999999	f0_balb.idr	Intergenic	Intergenic	93752.0	NM_027288	110173.0	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	0.0	2.0	10.5	2.0	5.5	4.0
Merged-chr19-41347516-3	chr19	41347045	41348045	+	881.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	37525.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57504488-3	chr9	57503982	57504982	+	881.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133982, exon 1 of 1)	exon (NM_133982, exon 1 of 1)	380.0	NM_133982	102614.0	Mm.274421	NM_133982	ENSMUSG00000062309	Rpp25	AI851155	ribonuclease P/MRP 25 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44762071-4	chr16	44761542	44762542	+	881.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3694.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75541810-3	chr11	75541305	75542305	+	881.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 2 of 13)	intron (NM_001199284, intron 2 of 13)	-9624.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102251515-2	chr7	102251015	102252015	+	881.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1397.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	16.0	14.5	16.5	12.0	16.0	17.0
Merged-chr11-50108242-3	chr11	50107740	50108740	+	881.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 7 of 7)	intron (NM_001290750, intron 7 of 7)	-23120.0	NM_001290759	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69110945-4	chr11	69110529	69111529	+	881.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9424.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	6.5	8.5	5.5	0.0	5.5	8.0
Merged-chr1-85287491-1	chr1	85286991	85287991	+	881.6666869999999	f1_balb.idr	Intergenic	Intergenic	-16925.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71555756-3	chr6	71555284	71556284	+	881.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361405, intron 2 of 6)	RMER19B|LTR|ERVK	9661.0	NM_001355674	66700.0	Mm.181278	NM_025783	ENSMUSG00000053119	Chmp3	25.1|4921505F14Rik|9130011K15Rik|CGI-49|D6Ertd286e|NEDF|Vps24	charged multivesicular body protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57535857-3	chr16	57535338	57536338	+	881.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-13404.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45388616-3	chr19	45388122	45389122	+	881.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009771, intron 1 of 13)	intron (NM_009771, intron 1 of 13)	24888.0	NM_001360126	12234.0	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	0.0	0.0	3.5	8.0	0.0	1.5
Merged-chr5-25527623-3	chr5	25527129	25528129	+	881.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2389.0	NR_027388	73571.0	Mm.105263	NR_027388	ENSMUSG00000101856	1700096K18Rik	-	RIKEN cDNA 1700096K18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133586761-3	chr4	133586239	133587239	+	881.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290742, intron 2 of 4)	intron (NM_001290742, intron 2 of 4)	2366.0	NM_133884	100210.0	Mm.274001	NM_133884	ENSMUSG00000028848	Gpn2	AI838661|Atpbd1b|R74630	GPN-loop GTPase 2	protein-coding	0.0	19.5	4.5	3.5	17.0	8.5
Merged-chr14-8171898-4	chr14	8171417	8172417	+	881.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024221, intron 2 of 9)	intron (NM_024221, intron 2 of 9)	1075.0	NM_024221	68263.0	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50996474-4	chr17	50995983	50996983	+	881.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 3 of 21)	intron (NM_028162, intron 3 of 21)	162895.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	3.5	7.0	6.0	6.5	5.5	7.5
Merged-chr14-121352409-3	chr14	121351912	121352912	+	881.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145465, intron 1 of 10)	intron (NM_145465, intron 1 of 10)	26818.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	2.0	0.5	1.5	0.0	1.0	4.0
Merged-chr8-73352780-5	chr8	73352326	73353326	+	881.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010687, exon 1 of 15)	5' UTR (NM_010687, exon 1 of 15)	714.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80296189-5	chr18	80295664	80296664	+	881.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001190373, exon 4 of 4)	exon (NM_001190373, exon 4 of 4)	39858.0	NM_025861	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108246511-4	chr6	108246011	108247011	+	881.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 4 of 61)	intron (NM_010585, intron 4 of 61)	33415.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95617029-4	chr10	95616530	95617530	+	881.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-52884.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23234761-4	chr16	23234249	23235249	+	881.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 1 of 7)	intron (NM_001252505, intron 1 of 7)	8728.0	NM_001252505	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152414809-4	chr2	152414298	152415298	+	881.582153	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289738)	promoter-TSS (NM_001289738)	246.0	NM_175126	67917.0	Mm.391810	NM_175126	ENSMUSG00000074682	Zcchc3	2810406K24Rik	zinc finger, CCHC domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101538276-4	chr13	101537768	101538768	+	881.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-140688.0	NR_046187	78136.0	Mm.399065	NR_046187		4922502H24Rik	-	RIKEN cDNA 4922502H24 gene	ncRNA	0.0	3.0	0.0	0.0	5.5	2.0
Merged-chr1-136633827-4	chr1	136633316	136634316	+	881.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8915.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-95881065-4	chr5	95880529	95881529	+	881.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75910.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94277143-4	chr11	94276639	94277639	+	881.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34560.0	NM_181819	278507.0	Mm.342216	NM_181819	ENSMUSG00000044177	Wfikkn2	2610304F08Rik|AY100450|Gasp1|WFIKKNRP	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr10-62594130-3	chr10	62593598	62594598	+	881.533325	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019553, exon 4 of 15)	exon (NM_019553, exon 4 of 15)	8200.0	NM_019553	56200.0	Mm.413275	NM_019553	ENSMUSG00000020075	Ddx21	AI255159|AL022742|D10Ertd645e|D10Wsu42e	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44686850-4	chr10	44686364	44687364	+	881.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-228116.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76712968-1	chr15	76712468	76713468	+	881.5	f1_balb.idr	exon (NM_145471, exon 4 of 6)	exon (NM_145471, exon 4 of 6)	2327.0	NM_001358893	223664.0	Mm.277582	NM_145471	ENSMUSG00000033728	Lrrc14	E130306I01Rik|mKIAA0014	leucine rich repeat containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43658829-2	chr7	43658329	43659329	+	881.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031181, intron 3 of 6)	intron (NM_031181, intron 3 of 6)	1332.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55449997-2	chr11	55449497	55450497	+	881.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 3 of 3)	intron (NM_009720, intron 3 of 3)	11211.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61487956-2	chr18	61487456	61488456	+	881.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3349.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	0.0	0.0	2.0	11.5	1.0	0.0
Merged-chr13-52597385-2	chr13	52596885	52597885	+	881.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 1 of 13)	intron (NM_011518, intron 1 of 13)	503.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90299627-2	chr16	90299127	90300127	+	881.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-15124.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-7625386-3	chr18	7624943	7625943	+	881.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081287, intron 1 of 16)	intron (NM_001081287, intron 1 of 16)	1420.0	NM_001081287	75739.0	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	2.0	2.5	3.5	0.0	0.0	3.5
Merged-chr8-125859262-2	chr8	125858762	125859762	+	881.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175561, intron 12 of 33)	intron (NM_175561, intron 12 of 33)	-38652.0	NR_155422	102632990.0	Mm.429446	NR_155422		A730098A19Rik	-	RIKEN cDNA A730098A19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105893395-4	chr3	105892925	105893925	+	881.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-10996.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	17.5	36.0	27.5	10.0	43.5	29.0
Merged-chr19-8839903-2	chr19	8839403	8840403	+	881.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290823)	promoter-TSS (NM_001290823)	575.0	NM_008144	14705.0	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57698215-2	chr15	57697715	57698715	+	881.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 1 of 3)	intron (NM_199449, intron 1 of 3)	3548.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70753111-3	chr12	70752590	70753590	+	881.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72424.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74372465-2	chr1	74371965	74372965	+	881.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-2738.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37881743-2	chr13	37881243	37882243	+	881.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	MTD|LTR|ERVL-MaLR	-6691.0	NR_033218	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103352412-2	chr11	103351912	103352912	+	881.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205236, intron 3 of 17)	B3A|SINE|B2	7659.0	NR_045346	653030.0	Mm.440684	NR_045346	ENSMUSG00000085887	Arhgap27os3	F830206d12rik|Gm11648	Rho GTPase activating protein 27, opposite strand 3	ncRNA	3.0	5.0	3.0	12.0	5.0	2.5
Merged-chr7-48905702-2	chr7	48905202	48906202	+	881.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24106.0	NM_001360812	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87284543-2	chr17	87284043	87285043	+	881.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 1 of 19)	intron (NM_028639, intron 1 of 19)	1657.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23271353-2	chr16	23270853	23271853	+	881.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-19117.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34099733-2	chr11	34099233	34100233	+	881.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER113|DNA|hAT-Charlie	-1179.0	NR_155520	76874.0	Mm.437529	NR_155520		4930469K13Rik	-	RIKEN cDNA 4930469K13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17644681-2	chr16	17644181	17645181	+	881.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029945, exon 20 of 20)	3' UTR (NM_029945, exon 20 of 20)	-1789.0	NM_001166164	72315.0	Mm.297777	NM_001166164	ENSMUSG00000041617	Ccdc74a	2310015A05Rik	coiled-coil domain containing 74A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-79102025-2	chr16	79101525	79102525	+	881.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-10928.0	NM_178855	19146.0	Mm.5184	NM_008941	ENSMUSG00000022857	Tmprss15	Entk|Prss7	transmembrane protease, serine 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25549095-2	chr2	25548595	25549595	+	881.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2155.0	NM_009422	22030.0	Mm.3399	NM_009422	ENSMUSG00000026942	Traf2	AI325259	TNF receptor-associated factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-74704148-2	chr5	74703648	74704648	+	881.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1245.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53042758-2	chr4	53042258	53043258	+	881.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013454, exon 41 of 50)	exon (NM_013454, exon 41 of 50)	30878.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-47024696-2	chr7	47024196	47025196	+	881.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-16282.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4565114-2	chr2	4564614	4565614	+	881.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 1 of 11)	RLTR20B4_MM|LTR|ERVK	5360.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71528811-3	chr8	71528324	71529324	+	881.4722289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8613.0	NM_198095	69550.0	Mm.260325	NM_198095	ENSMUSG00000046718	Bst2	2310015I10Rik|Bst-2|C87040|CD317|DAMP-1|GREG	bone marrow stromal cell antigen 2	protein-coding	35.5	51.0	39.5	4.5	19.0	19.0
Merged-chr15-36931634-4	chr15	36931135	36932135	+	881.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	75767.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-5214739-4	chr5	5214249	5215249	+	881.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 4 of 14)	intron (NM_011074, intron 4 of 14)	51319.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	1.0	6.0	2.0	0.0	0.0	0.0
Merged-chr1-56972366-4	chr1	56971878	56972878	+	881.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_024325, exon 1 of 1)	non-coding (NR_024325, exon 1 of 1)	909.0	NR_024326	329160.0	Mm.419039	NR_024325	ENSMUSG00000087022	9130024F11Rik	B530002L08|EG329160	RIKEN cDNA 9130024F11 gene	ncRNA	3.0	1.0	3.0	1.0	2.0	1.5
Merged-chr7-126285453-3	chr7	126284938	126285938	+	881.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145587, intron 1 of 3)	intron (NM_145587, intron 1 of 3)	12942.0	NM_145587	104175.0	Mm.29660	NM_145587	ENSMUSG00000042978	Sbk1	Sbk	SH3-binding kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64222296-4	chr9	64221788	64222788	+	881.4249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008927, intron 1 of 10)	intron (NM_008927, intron 1 of 10)	-12913.0	NM_033607	93841.0	Mm.390180	NM_033607	ENSMUSG00000035337	Uchl4	-	ubiquitin carboxyl-terminal esterase L4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45848226-4	chr4	45847676	45848676	+	881.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028788)	promoter-TSS (NM_028788)	-640.0	NM_001305421	74152.0	Mm.63645	NM_028788	ENSMUSG00000028327	Stra6l	1300002K09Rik|Rbpr2	STRA6-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132969537-4	chr4	132969072	132970072	+	881.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-4523.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95844190-4	chr11	95843705	95844705	+	881.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023121, intron 2 of 3)	B3|SINE|B2	960.0	NM_001284397	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-33033386-4	chr5	33032903	33033903	+	881.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14587.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20737443-4	chr14	20736945	20737945	+	881.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001039138, exon 19 of 20)	exon (NM_001039138, exon 19 of 20)	-2883.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	2.0	3.0	0.0	0.0	0.0	0.0
Merged-chr2-102831688-4	chr2	102831170	102832170	+	881.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 9 of 13)	intron (NM_001039150, intron 9 of 13)	69995.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	3.5	7.0	6.5	4.0	17.0	4.5
Merged-chr11-80167475-2	chr11	80166975	80167975	+	881.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 6 of 10)	B1_Mm|SINE|Alu	13313.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	9.5	23.0	17.0	11.5	24.0	20.0
Merged-chr7-140127208-3	chr7	140126739	140127739	+	881.357178	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153783, intron 2 of 6)	intron (NM_153783, intron 2 of 6)	1554.0	NM_153783	212503.0	Mm.486735	NM_153783	ENSMUSG00000025464	Paox	2410012F02Rik|AI118225|Pao	polyamine oxidase (exo-N4-amino)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91885213-2	chr16	91884724	91885724	+	881.349976	f0_balb.idr|f1_balb.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	46406.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.5	0.0	0.0	3.0	1.5
Merged-chr15-50841889-3	chr15	50841401	50842401	+	881.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 2 of 5)	intron (NM_001310481, intron 2 of 5)	47148.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0.0	2.0	2.5	0.0	2.0	2.5
Merged-chr2-131206876-4	chr2	131206285	131207285	+	881.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3575.0	NM_001291032	69596.0	Mm.2937	NM_027129	ENSMUSG00000068264	Ap5s1	0610038L13Rik|2310035K24Rik|AW060727|sigma5	adaptor-related protein 5 complex, sigma 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103484321-3	chr15	103483822	103484822	+	881.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153505, intron 22 of 30)	intron (NM_153505, intron 22 of 30)	-18712.0	NM_008800	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31472614-3	chr14	31472117	31473117	+	881.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001359847)	TTS (NM_001359847)	22141.0	NM_001359850	67011.0	Mm.291731	NM_025907	ENSMUSG00000021891	Mettl6	1600013P15Rik|AI467521|AU020711	methyltransferase like 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-67831096-4	chr13	67830606	67831606	+	881.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045194)	promoter-TSS (NR_045194)	0.0	NM_001309374	102637366.0	Mm.121460	NM_001015506	ENSMUSG00000058246	Gm10037	EG328280|Rslcan24	predicted gene 10037	protein-coding	77.5	153.5	156.0	3.0	19.0	13.5
Merged-chr9-55377970-3	chr9	55377525	55378525	+	881.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172923, intron 2 of 10)	intron (NM_172923, intron 2 of 10)	51112.0	NM_001357568	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50109535-3	chr6	50109026	50110026	+	881.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164734)	promoter-TSS (NM_001164734)	-715.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35094933-3	chr17	35094432	35095432	+	881.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178592, intron 5 of 19)	MIR|SINE|MIR	5641.0	NM_178592	193742.0	Mm.43745	NM_178592	ENSMUSG00000007036	Abhd16a	AI326074|Bat-5|Bat5|D17H6S82E|NG26	abhydrolase domain containing 16A	protein-coding	8.0	13.5	5.5	1.5	0.5	14.5
Merged-chr9-74425823-3	chr9	74425332	74426332	+	881.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	315498.0	NM_001033500	546144.0	Mm.335289	NM_177908	ENSMUSG00000044976	Wdr72	AW558070|D230040E23	WD repeat domain 72	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92127450-4	chr5	92126941	92127941	+	881.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	10284.0	NM_001359197	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	8.0	14.5	8.5	10.5	20.5	8.5
Merged-chr2-148580729-3	chr2	148580197	148581197	+	881.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91918.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22262996-3	chr16	22262489	22263489	+	881.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330555, intron 1 of 9)	intron (NM_001330555, intron 1 of 9)	3016.0	NM_001330554	20462.0	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13117428-3	chr16	13116925	13117925	+	881.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015769, intron 2 of 10)	intron (NM_015769, intron 2 of 10)	7689.0	NM_015769	50505.0	Mm.287837	NM_015769	ENSMUSG00000022545	Ercc4	AI606920|Xpf	excision repair cross-complementing rodent repair deficiency, complementation group 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120131324-4	chr8	120130826	120131826	+	881.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172286, intron 1 of 12)	intron (NM_172286, intron 1 of 12)	-13603.0	NM_001163760	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-79848210-4	chr7	79847711	79848711	+	881.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008486)	promoter-TSS (NM_008486)	-1.0	NM_008486	16790.0	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-118575123-4	chr5	118574608	118575608	+	881.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 1 of 30)	intron (NM_001347445, intron 1 of 30)	14389.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.0	1.0	3.0	0.0	2.0	2.5
Merged-chr14-48121327-3	chr14	48120829	48121829	+	881.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033602, intron 1 of 5)	CpG	460.0	NM_033602	93834.0	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	0.0	0.0	2.5	0.0	0.0	0.0
Merged-chr7-80375604-4	chr7	80375127	80376127	+	881.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4252.0	NM_172903	140481.0	Mm.269245	NM_172903	ENSMUSG00000038886	Man2a2	1700052O22Rik|4931438M07Rik|AI480988|MX|Man IIx	mannosidase 2, alpha 2	protein-coding	14.5	16.0	6.0	9.0	17.5	4.5
Merged-chr15-102459644-3	chr15	102459123	102460123	+	881.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025385, intron 2 of 4)	intron (NM_025385, intron 2 of 4)	453.0	NM_025385	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94966927-4	chr10	94966422	94967422	+	881.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22344.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-34552827-2	chr4	34552327	34553327	+	881.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001007589, intron 1 of 4)	B1_Mus1|SINE|Alu	2212.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21996789-2	chr11	21996289	21997289	+	881.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_011023, exon 5 of 5)	exon (NM_011023, exon 5 of 5)	4862.0	NM_011023	18423.0	Mm.129663	NM_011023	ENSMUSG00000005917	Otx1	A730044F23Rik|jv	orthodenticle homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120569676-2	chr8	120569176	120570176	+	881.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 8 of 15)	intron (NM_001145896, intron 8 of 15)	19399.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157201108-4	chr2	157200594	157201594	+	881.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011249, intron 1 of 21)	Lx9|LINE|L1	3440.0	NM_011249	19650.0	Mm.244671	NM_011249	ENSMUSG00000027641	Rbl1	AW547426|PRB1|p107	RB transcriptional corepressor like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34335356-4	chr17	34334866	34335866	+	881.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033978, intron 3 of 4)	intron (NM_001033978, intron 3 of 4)	9279.0	NM_010381	100504404.0	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	15.0	7.0	11.0	7.5	3.0	3.0
Merged-chr17-29010093-3	chr17	29009593	29010593	+	881.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-2098.0	NM_001357173	106504.0	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-107528488-4	chr1	107527982	107528982	+	881.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198028)	promoter-TSS (NM_198028)	-521.0	NM_001160307	241197.0	Mm.123919	NM_198028	ENSMUSG00000092572	Serpinb10	9830131G07|BB233602|Serpinb10-ps	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-56042496-4	chr7	56041990	56042990	+	881.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7665.0	NM_010418	15204.0	Mm.20929	NM_010418	ENSMUSG00000030451	Herc2	D15F32S1h|D7H15F32S1|D7H15F37S1|jdf2|mKIAA0393|rjs	HECT and RLD domain containing E3 ubiquitin protein ligase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79380663-4	chr15	79380176	79381176	+	881.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172608, intron 1 of 8)	intron (NM_172608, intron 1 of 8)	-5376.0	NR_035464	100316695.0		NR_035464	ENSMUSG00000088901	Mir1943	mir-1943|mmu-mir-1943	microRNA 1943	ncRNA	1.0	0.0	0.0	3.5	2.0	1.0
Merged-chr19-11858142-5	chr19	11857646	11858646	+	881.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2195.0	NM_001011524	258227.0	Mm.377385	NM_001011524	ENSMUSG00000060556	Olfr1418	MOR266-5	olfactory receptor 1418	protein-coding	6.5	7.0	6.0	6.5	14.5	19.5
Merged-chr10-127103836-4	chr10	127103314	127104314	+	881.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177614, intron 5 of 13)	intron (NM_177614, intron 5 of 13)	17346.0	NM_177614	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46908366-4	chr8	46907865	46908865	+	881.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78522.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95511417-4	chr9	95510881	95511881	+	881.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357977, intron 1 of 25)	CpG	615.0	NM_001357975	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-177703079-4	chr1	177702614	177703614	+	881.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26700.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85801565-4	chr8	85801053	85802053	+	881.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028007, intron 6 of 17)	B3|SINE|B2	39396.0	NM_028007	71927.0	Mm.61018	NM_028007	ENSMUSG00000031703	Itfg1	2310047C21Rik|AI314457|Cda08|D8Wsu49e	integrin alpha FG-GAP repeat containing 1	protein-coding	0.0	1.5	1.5	5.0	6.5	7.5
Merged-chr3-51396676-4	chr3	51396183	51397183	+	881.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026358)	promoter-TSS (NM_026358)	-136.0	NM_026358	67749.0	Mm.273339	NM_026358	ENSMUSG00000037161	Mgarp	4930583H14Rik|AI195347|CESP-1|HUMMR|Osap|Qsap	mitochondria localized glutamic acid rich protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-82351508-4	chr8	82351012	82352012	+	881.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008357, intron 2 of 7)	B3A|SINE|B2	51074.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	5.0	24.0	8.0	5.5	24.0	7.0
Merged-chr6-31233459-4	chr6	31232959	31233959	+	881.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040260, intron 1 of 5)	L3|LINE|CR1	13108.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-90930079-3	chr13	90929582	90930582	+	881.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6960.0	NM_024175	66475.0	Mm.306302	NM_024175	ENSMUSG00000049517	Rps23	2410044J15Rik	ribosomal protein S23	protein-coding	0.0	1.5	1.0	0.0	12.5	1.0
Merged-chr2-29640686-6	chr2	29640194	29641194	+	881.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	20974.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8508486-1	chr17	8507986	8508986	+	881.1666869999999	f0_balb.idr	Intergenic	Intergenic	-18315.0	NM_001290707	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55787907-2	chr14	55787407	55788407	+	881.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_019955, exon 3 of 10)	exon (NM_019955, exon 3 of 10)	950.0	NM_001164107	56532.0	Mm.46612	NM_019955	ENSMUSG00000022221	Ripk3	2610528K09Rik|AW107945|Rip3	receptor-interacting serine-threonine kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97690053-2	chr11	97689553	97690553	+	881.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_009545, exon 13 of 13)	exon (NM_009545, exon 13 of 13)	4101.0	NM_001085500	217149.0	Mm.29659	NM_001085500	ENSMUSG00000078695	Cisd3	Mel-13|Mel13	CDGSH iron sulfur domain 3	protein-coding	0.0	0.0	0.0	1.5	2.0	0.5
Merged-chr1-152538172-2	chr1	152537672	152538672	+	881.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 10 of 17)	intron (NM_016846, intron 10 of 17)	87045.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-52000253-4	chr16	51999758	52000758	+	881.162476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12971.0	NR_153657	629091.0	Mm.364775	NR_153657		Gm29686	-	predicted gene, 29686	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104344309-7	chr8	104343770	104344770	+	881.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024217, intron 2 of 4)	intron (NM_024217, intron 2 of 4)	3676.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99576053-4	chr5	99575530	99576530	+	881.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	153030.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143547602-4	chr5	143547111	143548111	+	881.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1095.0	NM_133703	67238.0	Mm.383219	NM_026050	ENSMUSG00000083012	Fam220a	1500026F15Rik|2810453I06Rik|AW047776|Acpin1|Sipar	family with sequence similarity 220, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-75280603-3	chr3	75280111	75281111	+	881.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10533.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-69680828-3	chr18	69680329	69681329	+	881.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 17 of 19)	intron (NM_001361128, intron 17 of 19)	-244730.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	0.0	0.0	2.5	0.0	0.0	2.5
Merged-chr5-88628784-3	chr5	88628305	88629305	+	881.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 8 of 13)	intron (NM_001359208, intron 8 of 13)	45292.0	NM_001359209	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115160921-3	chr5	115160430	115161430	+	881.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-2754.0	NM_175403	109154.0	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	8.5	9.0	5.5	5.0	20.5	12.0
Merged-chr17-74853881-3	chr17	74853391	74854391	+	881.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152817, intron 16 of 19)	intron (NM_152817, intron 16 of 19)	136141.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	3.0	8.5	5.5	1.0	17.5	4.0
Merged-chr6-6004973-3	chr6	6004501	6005501	+	881.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010063, intron 14 of 16)	intron (NM_010063, intron 14 of 16)	-27608.0	NR_040255	72249.0	Mm.443268	NR_040255	ENSMUSG00000085416	1700019G24Rik	-	RIKEN cDNA 1700019G24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76402417-3	chr14	76401920	76402920	+	881.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12541.0	NM_001310646	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95142390-4	chr3	95141871	95142871	+	881.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027206)	promoter-TSS (NM_027206)	-11.0	NM_027206	69769.0	Mm.34368	NM_027206	ENSMUSG00000013707	Tnfaip8l2	1810019A08Rik|AW610835|TIPE2	tumor necrosis factor, alpha-induced protein 8-like 2	protein-coding	36.5	58.0	35.5	17.0	63.0	46.5
Merged-chr12-25282740-4	chr12	25282224	25283224	+	881.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153550.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	3.0	1.5	0.0	10.0	1.0	3.0
Merged-chr14-31337508-4	chr14	31336986	31337986	+	881.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360187, intron 1 of 20)	intron (NM_001360187, intron 1 of 20)	848.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22850442-6	chr11	22850020	22851020	+	881.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	9215.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24708836-4	chr17	24708361	24709361	+	881.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1208.0	NM_145396	213773.0	Mm.100353	NM_145396	ENSMUSG00000040688	Tbl3	9430070M15Rik	transducin (beta)-like 3	protein-coding	30.5	49.5	55.0	7.5	8.0	9.5
Merged-chr6-53462099-4	chr6	53461647	53462647	+	881.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 5 of 10)	intron (NM_001327821, intron 5 of 10)	-111227.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30325592-4	chr7	30325113	30326113	+	881.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3238.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	10.0	12.0	9.5	6.0	1.5	3.0
Merged-chr4-41558689-3	chr4	41558183	41559183	+	881.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027993, intron 1 of 5)	L3|LINE|CR1	10844.0	NM_001159583	71901.0	Mm.39215	NM_027993	ENSMUSG00000028439	Fam219a	2310028H24Rik	family with sequence similarity 219, member A	protein-coding	7.5	2.5	13.0	0.0	0.0	2.0
Merged-chr12-55315406-4	chr12	55314906	55315906	+	881.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025373, intron 3 of 6)	B1F|SINE|Alu	-12406.0	NM_021529	59032.0	Mm.427307	NM_021529	ENSMUSG00000021022	Ppp2r3c	4930511A21Rik|5730412A08Rik|G4-1|G5pr	protein phosphatase 2, regulatory subunit B'', gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54957151-4	chr11	54956652	54957652	+	881.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199275, intron 1 of 18)	intron (NM_001199275, intron 1 of 18)	5788.0	NM_021327	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138162893-4	chr1	138162378	138163378	+	881.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	12248.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69995556-2	chr8	69995056	69996056	+	881.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 1 of 12)	intron (NM_001286450, intron 1 of 12)	828.0	NM_001286450	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	8.0	67.5	26.5	16.5	47.5	22.5
Merged-chr18-74888773-1	chr18	74888273	74889273	+	881.0	f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	72490.0	NM_010720	16891.0	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding	1.0	0.0	0.0	0.0	4.0	4.0
Merged-chr11-102041547-2	chr11	102041047	102042047	+	881.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160713)	promoter-TSS (NM_001160713)	36.0	NM_001160713	52685.0	Mm.266885	NM_027987	ENSMUSG00000017309	Cd300lg	2310016B05Rik|Clm9|D11Ertd736e	CD300 molecule like family member G	protein-coding	2.0	2.5	0.0	2.0	2.5	0.0
Merged-chr4-125111934-2	chr4	125111434	125112434	+	881.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151472, exon 8 of 8)	non-coding (NR_151472, exon 8 of 8)	15947.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119345719-1	chr9	119345219	119346219	+	881.0	f1_c57bl6.idr	intron (NM_130864, intron 5 of 11)	intron (NM_130864, intron 5 of 11)	4425.0	NM_001357516	113868.0	Mm.205266	NM_130864	ENSMUSG00000036138	Acaa1a	Acaa|Acaa1|D9Ertd25e|PTL	acetyl-Coenzyme A acyltransferase 1A	protein-coding	0.0	1.0	1.5	0.0	2.5	5.0
Merged-chr19-4124651-2	chr19	4124151	4125151	+	881.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016666, intron 1 of 6)	intron (NM_016666, intron 1 of 6)	1207.0	NM_016666	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-53474041-2	chr17	53473541	53474541	+	881.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-5193.0	NM_025887	271457.0	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-99164341-1	chr4	99163841	99164841	+	881.0	f1_balb.idr	Intergenic	Intergenic	-29593.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-142768948-3	chr2	142768444	142769444	+	881.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 12 of 26)	MER2B|DNA|TcMar-Tigger	132520.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-118649872-2	chr5	118649372	118650372	+	881.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	89153.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-10078584-2	chr2	10078084	10079084	+	881.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020615, intron 1 of 9)	intron (NM_020615, intron 1 of 9)	1926.0	NM_020615	11949.0	Mm.12677	NM_020615	ENSMUSG00000025781	Atp5c1	1700094F02Rik|Atp5f1c	ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139387941-2	chr7	139387441	139388441	+	881.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1168.0	NM_183144	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34313102-3	chr17	34312558	34313558	+	881.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010382, intron 2 of 5)	MTC|LTR|ERVL-MaLR	7191.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	34.5	92.5	68.0	20.5	48.0	22.0
Merged-chr12-21315830-3	chr12	21315356	21316356	+	881.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026347)	promoter-TSS (NM_026347)	-536.0	NM_026347	67732.0	Mm.335830	NM_026347	ENSMUSG00000062054	Iah1	1500019E20Rik|4833421E05Rik	isoamyl acetate-hydrolyzing esterase 1 homolog	protein-coding	3.5	17.5	19.0	10.5	22.5	36.5
Merged-chr18-69592583-4	chr18	69592084	69593084	+	881.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	246424.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100638990-2	chr15	100638490	100639490	+	881.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2050.0	NM_001033872	207818.0	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-77217444-3	chr5	77216932	77217932	+	881.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5961.0	NM_001289768	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	2.5	0.0	0.0	2.5	0.0	0.5
Merged-chr17-71294259-2	chr17	71293759	71294759	+	881.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	(TG)n|Simple_repeat|Simple_repeat	16752.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	0.5	4.0	3.5	0.5	4.0	3.5
Merged-chr6-89340775-3	chr6	89340304	89341304	+	881.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008881, intron 8 of 31)	intron (NM_008881, intron 8 of 31)	21809.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116822260-2	chr4	116821760	116822760	+	881.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146256)	promoter-TSS (NM_146256)	-752.0	NM_146256	242642.0	Mm.279897	NM_146256	ENSMUSG00000043155	Hpdl	A830048M07Rik|BC034099|Gloxd1	4-hydroxyphenylpyruvate dioxygenase-like	protein-coding	0.0	0.0	0.0	0.5	5.0	1.5
Merged-chr12-113228086-1	chr12	113227586	113228586	+	881.0	f1_c57bl6.idr	Intergenic	Intergenic	42183.0	NM_153776	69195.0	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	0.0	0.0	2.5	7.0	8.5	4.5
Merged-chr2-4605911-2	chr2	4605411	4606411	+	881.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 10 of 11)	intron (NM_001177844, intron 10 of 11)	46157.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-99184231-3	chr13	99183748	99184748	+	881.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004149)	promoter-TSS (NM_001004149)	-575.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	7.5	16.0	0.5	4.0	15.5	0.5
Merged-chr1-191186659-3	chr1	191186123	191187123	+	881.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3290.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22445494-2	chr16	22444994	22445994	+	881.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5924.0	NM_023794	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80431266-1	chr10	80430766	80431766	+	881.0	f1_c57bl6.idr	intron (NM_001164153, intron 1 of 18)	intron (NM_001164153, intron 1 of 18)	2387.0	NM_001164150	21423.0	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr11-74650677-2	chr11	74650177	74651177	+	881.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081158, intron 1 of 25)	intron (NM_001081158, intron 1 of 25)	1182.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30554489-2	chr7	30553989	30554989	+	881.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001290569)	TTS (NM_001290569)	1187.0	NM_001012401	243912.0	Mm.34885	NM_001012401	ENSMUSG00000036854	Hspb6	AA387366|Gm479|Hsp20	heat shock protein, alpha-crystallin-related, B6	protein-coding	0.0	0.0	2.0	1.5	0.0	0.0
Merged-chr11-13684889-2	chr11	13684389	13685389	+	881.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	494152.0	NR_131011	75280.0	Mm.108492	NR_131011	ENSMUSG00000085452	4930554G24Rik	-	RIKEN cDNA 4930554G24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121846989-1	chr5	121846489	121847489	+	881.0	f1_c57bl6.idr	Intergenic	Intergenic	-2008.0	NM_175474	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	0.0	2.0	0.0	1.5	1.5	0.0
Merged-chr3-90132922-2	chr3	90132422	90133422	+	881.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029937, intron 9 of 39)	intron (NM_029937, intron 9 of 39)	28790.0	NM_029937	77595.0	Mm.159949	NM_029937	ENSMUSG00000027939	Nup210l	4930548O11Rik|R26-EGFP|Tg(Gt(ROSA)26Sor-EGFP)130910Eps	nucleoporin 210-like	protein-coding	0.0	0.0	0.5	0.0	0.5	0.0
Merged-chr5-21760122-2	chr5	21759622	21760622	+	881.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009584, intron 15 of 16)	intron (NM_009584, intron 15 of 16)	22962.0	NM_028431	73078.0	Mm.301655	NM_028431	ENSMUSG00000029017	Pmpcb	3110004O18Rik|MPP11|MPPB|MPPP52	peptidase (mitochondrial processing) beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68126271-4	chr10	68125778	68126778	+	881.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 7 of 9)	intron (NM_023598, intron 7 of 9)	146708.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	13.5	36.0	34.5	38.0	50.0	42.5
Merged-chr10-71355420-2	chr10	71354920	71355920	+	881.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027184, intron 1 of 5)	B4A|SINE|B4	7657.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-52568135-2	chr18	52567635	52568635	+	881.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38268.0	NM_001286182	16948.0	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	3.0	11.0	9.0	1.0	8.0	5.5
Merged-chr7-27481112-2	chr7	27480612	27481612	+	881.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-5841.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	0.0	15.0	1.5	3.0	10.5	2.5
Merged-chr16-44558213-2	chr16	44557713	44558713	+	881.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037242)	promoter-TSS (NR_037242)	-84.0	NR_037242	100526478.0		NR_037242	ENSMUSG00000093046	Mir3081	mir-3081|mmu-mir-3081	microRNA 3081	ncRNA	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90964929-4	chr5	90964408	90965408	+	880.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026788, intron 5 of 7)	intron (NM_026788, intron 5 of 7)	33712.0	NM_026788	665563.0	Mm.153030	NM_026788	ENSMUSG00000029376	Mthfd2l	1110019K23Rik|C630010D07Rik	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57354598-4	chr16	57354100	57355100	+	880.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	1323.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17253283-4	chr12	17252835	17253835	+	880.9541630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13260.0	NM_027959	71853.0	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	0.0	4.0	5.0	1.0	1.0	0.0
Merged-chr7-101912086-3	chr7	101911582	101912582	+	880.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027053)	TTS (NM_027053)	-5723.0	NM_001081679	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146272488-3	chr6	146271991	146272991	+	880.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 37 of 56)	intron (NM_019923, intron 37 of 56)	229732.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-164586318-4	chr1	164585822	164586822	+	880.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	83015.0	NR_151593	102635083.0	Mm.98705	NR_151593	ENSMUSG00000097281	Gm26685	-	predicted gene, 26685	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97449170-4	chr15	97448667	97449667	+	880.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-201880.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32876889-3	chr16	32876406	32877406	+	880.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027226)	promoter-TSS (NM_027226)	-878.0	NM_001356387	69823.0	Mm.12831	NM_027226	ENSMUSG00000022800	Fyttd1	2010005M05Rik|3830411L18Rik|3830421F13Rik|4933423A17Rik|AI098218|AW539567|C85190	forty-two-three domain containing 1	protein-coding	1.0	3.5	7.0	13.0	8.0	12.0
Merged-chr3-83867115-3	chr3	83866581	83867581	+	880.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3A|LTR|ERVK	-25473.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0.0	7.5	0.0	0.0	0.0	5.0
Merged-chr4-129020523-6	chr4	129019944	129020944	+	880.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27220.0	NM_001033966	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37979212-3	chr10	37978714	37979714	+	880.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-196560.0	NR_131035	75877.0	Mm.402094	NR_131035	ENSMUSG00000111234	4930591E09Rik	-	RIKEN cDNA 4930591E09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108333211-3	chr12	108332693	108333693	+	880.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1123.0	NM_010010	13116.0	Mm.41911	NM_010010	ENSMUSG00000021259	Cyp46a1	CH24H|Cyp46	cytochrome P450, family 46, subfamily a, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-85575208-3	chr17	85574713	85575713	+	880.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43183.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58618731-3	chr13	58618228	58619228	+	880.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7851.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143036633-4	chr7	143036132	143037132	+	880.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110355, intron 4 of 4)	Lx3_Mus|LINE|L1	-16118.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	20.5	72.5	34.0	43.5	54.5	51.0
Merged-chr5-113899349-4	chr5	113898863	113899863	+	880.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011779, intron 1 of 10)	intron (NM_011779, intron 1 of 10)	9343.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42089305-4	chr10	42088814	42089814	+	880.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70932.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-177282179-4	chr1	177281688	177282688	+	880.845825	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33421.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0.5	7.5	1.0	3.0	11.5	5.0
Merged-chr15-57907610-2	chr15	57907110	57908110	+	880.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-4589.0	NM_001081396	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	40.5	85.0	65.5	17.5	79.5	74.5
Merged-chr3-88380537-2	chr3	88380037	88381037	+	880.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1836.0	NM_001032298	12097.0	Mm.425160	NM_001032298	ENSMUSG00000074486	Bglap2	BGP2|Bglap1|Bgp|Og2|mOC-B	bone gamma-carboxyglutamate protein 2	protein-coding	1.5	7.5	2.0	2.5	7.5	2.0
Merged-chr1-35839628-3	chr1	35839109	35840109	+	880.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-228791.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115007206-4	chr5	115006717	115007717	+	880.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4307.0	NM_029012	74585.0	Mm.355894	NM_029012	ENSMUSG00000029550	Sppl3	4833416I09Rik|Psl4|Usmg3	signal peptide peptidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5577818-3	chr2	5577296	5578296	+	880.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	98250.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	2.0	14.5	1.0	1.5	2.5	0.0
Merged-chr1-105781052-3	chr1	105780582	105781582	+	880.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	359.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20036874-7	chr10	20036371	20037371	+	880.8214109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 7 of 29)	intron (NM_008580, intron 7 of 29)	102345.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137578432-4	chr4	137577935	137578935	+	880.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3255.0	NM_001033979	435811.0	Mm.359646	NM_001033979	ENSMUSG00000094035	Ldlrad2	-	low density lipoprotein receptor A domain containing 2	protein-coding	0.0	1.0	0.5	1.0	6.5	1.0
Merged-chr10-100868727-3	chr10	100868230	100869230	+	880.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	-127095.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-13590872-2	chr1	13590372	13591372	+	880.7999880000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028173)	promoter-TSS (NM_028173)	-962.0	NM_028173	72265.0	Mm.28765	NM_028173	ENSMUSG00000025935	Tram1	1810049E02Rik|TRAMP	translocating chain-associating membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr1-191197162-2	chr1	191196662	191197662	+	880.791626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13829.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-60832908-3	chr9	60832410	60833410	+	880.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357408, intron 1 of 19)	L1MB2|LINE|L1	38468.0	NM_001357407	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107947832-4	chr13	107947312	107948312	+	880.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR83|LTR|ERVL	-57748.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	19.0	35.5	14.0	19.0	26.0	12.0
Merged-chr3-146685234-4	chr3	146684705	146685705	+	880.761902	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-33888.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81202584-4	chr7	81202144	81203144	+	880.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11160.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	10.5	18.5	15.5	10.5	18.5	17.0
Merged-chr15-95768942-4	chr15	95768444	95769444	+	880.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17353.0	NR_131148	629300.0	Mm.247258	NR_131148	ENSMUSG00000115699	Gm6961	EG629300	predicted gene 6961	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-21985920-4	chr6	21985414	21986414	+	880.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081351)	promoter-TSS (NM_001081351)	4.0	NM_001081351	214642.0	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182961922-4	chr1	182961411	182962411	+	880.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016928, intron 1 of 3)	intron (NM_016928, intron 1 of 3)	7123.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	5.0	1.5	1.0	2.5	2.0	5.0
Merged-chr1-184067130-4	chr1	184066626	184067626	+	880.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022019, intron 2 of 3)	intron (NM_022019, intron 2 of 3)	32745.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153779649-2	chr2	153779149	153780149	+	880.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1230.0	NR_036629	100504221.0	Mm.246778	NM_177849	ENSMUSG00000044083	Efcab8	A630008I04|EG329541	EF-hand calcium binding domain 8	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135367787-2	chr5	135367287	135368287	+	880.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001346745)	TTS (NM_001346745)	-2166.0	NM_001359617	100609.0	Mm.281189	NM_145414	ENSMUSG00000000916	Nsun5	9830109N13Rik|AI326939|Nol1r|Wbscr20|Wbscr20a	NOL1/NOP2/Sun domain family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158189610-4	chr2	158189135	158190135	+	880.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001131021, intron 14 of 15)	ORR1D2|LTR|ERVL-MaLR	-2373.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71665577-6	chr8	71664988	71665988	+	880.7222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 3 of 41)	(A)n|Simple_repeat|Simple_repeat	6269.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	0.0	18.0	0.0	2.0	2.0	6.0
Merged-chr5-96968761-4	chr5	96968259	96969259	+	880.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28930.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	16.5	38.0	36.5	17.5	60.0	66.5
Merged-chr7-16426321-4	chr7	16425763	16426763	+	880.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198631, intron 10 of 13)	intron (NM_198631, intron 10 of 13)	25067.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-86069581-4	chr5	86068982	86069982	+	880.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2264.0	NM_019992	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	13.5	10.0	8.5	18.0	12.0	6.5
Merged-chr7-31111780-4	chr7	31111281	31112281	+	880.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276269)	promoter-TSS (NM_001276269)	-784.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	55.5	74.0	86.5	77.5	131.5	73.0
Merged-chr11-6175005-3	chr11	6174527	6175527	+	880.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173748, intron 2 of 5)	intron (NM_173748, intron 2 of 5)	-1696.0	NR_029471	100042173.0	Mm.441799	NR_029471		Rps15a-ps6	Gm11968	ribosomal protein S15A, pseudogene 6	pseudo	1.0	0.0	1.0	1.0	0.0	0.0
Merged-chr14-104901323-3	chr14	104900821	104901821	+	880.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015593, intron 3 of 5)	MTD|LTR|ERVL-MaLR	213355.0	NR_040628	100502987.0	Mm.124957	NR_040628		Gm17066	-	predicted gene 17066	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-124847792-4	chr4	124847314	124848314	+	880.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008636, exon 11 of 11)	3' UTR (NM_008636, exon 11 of 11)	2750.0	NM_001347196	68920.0	Mm.272397	NM_001142727	ENSMUSG00000078570	1110065P20Rik	C530005M16Rik	RIKEN cDNA 1110065P20 gene	protein-coding	0.0	0.0	2.0	0.0	0.0	3.0
Merged-chr5-122731483-3	chr5	122730987	122731987	+	880.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145358, exon 16 of 16)	3' UTR (NM_145358, exon 16 of 16)	23943.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-109003370-3	chr9	109002891	109003891	+	880.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 3 of 13)	B3|SINE|B2	11489.0	NR_153430	270198.0	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-115351120-3	chr10	115350612	115351612	+	880.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359472, intron 3 of 6)	ORR1B2|LTR|ERVL-MaLR	11137.0	NM_001359470	67226.0	Mm.29647	NM_133683	ENSMUSG00000069520	Tmem19	2810428F02Rik|AW125171	transmembrane protein 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57518840-2	chr16	57518340	57519340	+	880.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-30402.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	1.5	9.0	0.0	0.0	9.0	0.0
Merged-chr15-58990325-3	chr15	58989833	58990833	+	880.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	56523.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54711106-3	chr11	54710598	54711598	+	880.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76605.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87038033-3	chr6	87037518	87038518	+	880.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4828.0	NM_013528	14583.0	Mm.19893	NM_013528	ENSMUSG00000029992	Gfpt1	2810423A18Rik|AI324119|AI449986|GFA|GFAT|GFAT1|GFAT1m|Gfpt	glutamine fructose-6-phosphate transaminase 1	protein-coding	7.0	62.5	13.0	7.5	41.0	25.0
Merged-chr2-18047999-3	chr2	18047482	18048482	+	880.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028317, exon 1 of 1)	exon (NM_028317, exon 1 of 1)	467.0	NM_028317	72668.0	Mm.102183	NM_028317	ENSMUSG00000054074	Skida1	2810030E01Rik|5730507N06Rik|BB088113|DLN-1	SKI/DACH domain containing 1	protein-coding	0.0	0.0	0.0	0.0	3.5	4.5
Merged-chr9-5357047-3	chr9	5356560	5357560	+	880.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009808, intron 8 of 10)	intron (NM_009808, intron 8 of 10)	11584.0	NM_009808	12364.0	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128412169-3	chr7	128411656	128412656	+	880.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 1 of 4)	intron (NM_026418, intron 1 of 4)	6016.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9154351-3	chr3	9153839	9154839	+	880.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92375.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-30507334-2	chr3	30506834	30507834	+	880.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361034, intron 1 of 16)	intron (NM_001361034, intron 1 of 16)	2341.0	NM_001361034	14013.0	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102224687-4	chr15	102224222	102225222	+	880.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013566, exon 3 of 15)	exon (NM_013566, exon 3 of 15)	7213.0	NM_013566	16421.0	Mm.58	NM_013566	ENSMUSG00000001281	Itgb7	Ly69	integrin beta 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96652931-2	chr9	96652429	96653429	+	880.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21426.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	0.0	4.5	2.0	0.0	1.0	1.0
Merged-chr11-101181054-2	chr11	101180554	101181554	+	880.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_016782, intron 8 of 23)	B3A|SINE|B2	4937.0	NM_016782	53321.0	Mm.474527	NM_016782	ENSMUSG00000017167	Cntnap1	AI841080|Caspr|NCP1|Nrxn4|p190|shm	contactin associated protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100616907-4	chr5	100616403	100617403	+	880.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44698.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	35.0	44.0	30.5	35.0	31.5	31.0
Merged-chr12-12269330-4	chr12	12268827	12269827	+	880.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	7188.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46311370-4	chr8	46310823	46311823	+	880.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-16652.0	NM_173789	234219.0	Mm.145631	NM_173789	ENSMUSG00000047171	Helt	A830086M02|Hesl|Heslike|Mgn|megane	helt bHLH transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20846339-4	chr14	20845819	20846819	+	880.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9657.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	2.0	5.5	8.0	3.0	3.0	3.0
Merged-chr12-76594257-7	chr12	76593729	76594729	+	880.619019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013675, intron 32 of 35)	intron (NM_013675, intron 32 of 35)	-46304.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32485506-3	chr9	32484996	32485996	+	880.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	MLT1G1|LTR|ERVL-MaLR	55956.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-87452248-3	chr14	87451747	87452747	+	880.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253755, intron 1 of 11)	intron (NM_001253755, intron 1 of 11)	35664.0	NM_001253755	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	18.0	1.5	3.5	6.5	1.0	1.0
Merged-chr18-5616812-3	chr18	5616323	5617323	+	880.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360981, intron 2 of 8)	L1MA8|LINE|L1	24176.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	3.0	2.5	2.0	0.0	0.0	0.0
Merged-chr3-62492771-4	chr3	62492269	62493269	+	880.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028136, intron 8 of 24)	intron (NM_028136, intron 8 of 24)	14219.0	NM_028136	72162.0	Mm.224233	NM_028136	ENSMUSG00000027770	Dhx36	2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488	DEAH (Asp-Glu-Ala-His) box polypeptide 36	protein-coding	7.0	1.0	4.0	0.0	2.0	3.5
Merged-chr17-23706430-4	chr17	23705930	23706930	+	880.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19906.0	NM_023058	268930.0	Mm.182193	NM_023058	ENSMUSG00000023908	Pkmyt1	6230424P17|AW209059|Myt1	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	3.5	6.0	11.0	2.5	50.0	12.0
Merged-chr8-71404986-4	chr8	71404503	71405503	+	880.595825	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026636)	TTS (NM_026636)	-1009.0	NM_001310502	234396.0	Mm.216549	NM_172756	ENSMUSG00000046295	Ankle1	8430438L13Rik|Ankrd41|C430003I23|Lem3	ankyrin repeat and LEM domain containing 1	protein-coding	53.5	51.5	49.0	16.5	29.5	31.0
Merged-chr7-97741205-4	chr7	97740691	97741691	+	880.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2944.0	NM_175105	66333.0	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	0.0	0.0	0.5	0.0	2.5	3.0
Merged-chr10-24625179-4	chr10	24624657	24625657	+	880.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29715.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60740578-4	chr18	60740089	60741089	+	880.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	6157.0	NM_001348101	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	1.5	10.5	5.5	5.5	27.5	10.0
Merged-chr1-131492629-4	chr1	131492116	131493116	+	880.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	34745.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	6.0	2.5	4.5	0.0	3.5	7.0
Merged-chr2-102451892-7	chr2	102451424	102452424	+	880.56427	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010218)	promoter-TSS (NM_010218)	-132.0	NM_010218	14221.0	Mm.29730	NM_010218	ENSMUSG00000075012	Fjx1	-	four jointed box 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95099172-3	chr8	95098667	95099667	+	880.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001145831)	TTS (NM_001145831)	14175.0	NM_001145832	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	0.0	0.0	0.0	6.0	0.0	0.0
Merged-chr6-35597255-4	chr6	35596736	35597736	+	880.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57348.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-57745305-4	chr18	57744805	57745805	+	880.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34690.0	NR_152224	100503033.0	Mm.381112	NR_152224		Gm19519	-	predicted gene, 19519	ncRNA	1.5	14.5	3.5	0.5	6.5	1.0
Merged-chr2-118491496-5	chr2	118491065	118492065	+	880.534973	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11869.0	NM_009273	20813.0	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	30.5	31.5	23.0	23.0	27.0	17.0
Merged-chr5-100635138-6	chr5	100634614	100635614	+	880.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39142.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-72798025-4	chr17	72797520	72798520	+	880.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38608.0	NM_027166	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	1.5	0.0	0.5	0.0	0.0	0.5
Merged-chr18-88774303-3	chr18	88773795	88774795	+	880.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	119912.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141020619-3	chr7	141020125	141021125	+	880.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR51A_Mm|LTR|ERVK?	-3733.0	NM_001033632	213002.0	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81295887-2	chr10	81295387	81296387	+	880.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	2924.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99941080-2	chr12	99940580	99941580	+	880.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028354, intron 14 of 15)	intron (NM_028354, intron 14 of 15)	-23419.0	NM_001164426	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88566638-2	chr5	88566138	88567138	+	880.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289774, intron 1 of 17)	intron (NM_001289774, intron 1 of 17)	1598.0	NM_001289775	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61333195-2	chr9	61332695	61333695	+	880.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39171.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.0	0.0	1.0	0.0	0.5	0.0
Merged-chr11-86752525-2	chr11	86752025	86753025	+	880.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	(A)n|Simple_repeat|Simple_repeat	5042.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80464154-2	chr12	80463654	80464654	+	880.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133798, intron 1 of 8)	B3A|SINE|B2	1059.0	NM_133798	97827.0	Mm.206631	NM_133798	ENSMUSG00000032705	Exd2	4930539P14Rik|C85658|Exdl2	exonuclease 3'-5' domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63006255-4	chr9	63005737	63006737	+	880.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25358.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34199280-2	chr10	34198780	34199780	+	880.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	8271.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107741348-2	chr13	107740848	107741848	+	880.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 8 of 14)	intron (NM_145456, intron 8 of 14)	53951.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135689911-2	chr3	135689411	135690411	+	880.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 1 of 24)	intron (NM_008689, intron 1 of 24)	1636.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130448717-2	chr5	130448217	130449217	+	880.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021371)	promoter-TSS (NM_021371)	-75.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-28777078-4	chr19	28776569	28777569	+	880.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58097.0	NM_009199	20510.0	Mm.246670	NM_009199	ENSMUSG00000024935	Slc1a1	D130048G10Rik|EAAC1|EAAC2|EAAT3|MEAAC1	solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27621089-3	chr15	27620601	27621601	+	880.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013792, intron 2 of 6)	intron (NM_001013792, intron 2 of 6)	9592.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5515322-2	chr19	5514822	5515822	+	880.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-4805.0	NM_001024560	225861.0	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89354990-4	chr3	89354495	89355495	+	880.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029974, intron 9 of 15)	MamRep564|Unknown|Unknown	-4967.0	NM_009614	11490.0	Mm.274049	NM_009614	ENSMUSG00000028041	Adam15	AD56|MDC15	a disintegrin and metallopeptidase domain 15 (metargidin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-24506530-2	chr9	24506030	24507030	+	880.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3390.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60605025-2	chr13	60604525	60605525	+	880.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	B2_Mm2|SINE|B2	2814.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	6.5	15.5	28.0	12.0	30.5	11.5
Merged-chr5-64380513-2	chr5	64380013	64381013	+	880.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87429.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	39.5	76.5	31.5	23.0	56.0	39.5
Merged-chr4-63366402-2	chr4	63365902	63366902	+	880.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001305432)	TTS (NM_001305432)	3953.0	NM_011016	18406.0	Mm.14173	NM_011016	ENSMUSG00000061540	Orm2	Agp1|Orm-2	orosomucoid 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-55546416-2	chr9	55545916	55546916	+	880.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027397)	TTS (NM_027397)	5267.0	NM_027397	104360.0	Mm.273996	NM_027397	ENSMUSG00000032318	Isl2	3110001N10Rik	insulin related protein 2 (islet 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-19990633-2	chr14	19990133	19991133	+	880.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13384.0	NM_001285909	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-53464304-3	chr3	53463829	53464829	+	880.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173382, intron 1 of 12)	intron (NM_173382, intron 1 of 12)	512.0	NM_173382	212127.0	Mm.491292	NM_173382	ENSMUSG00000049504	Proser1	2810046L04Rik|9330161F11	proline and serine rich 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94527616-2	chr16	94527116	94528116	+	880.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007834)	promoter-TSS (NM_007834)	-987.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28142384-2	chr17	28141884	28142884	+	880.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004366)	promoter-TSS (NM_001004366)	-142.0	NM_001004366	268935.0	Mm.258491	NM_001004366	ENSMUSG00000038677	Scube3	CEGF3|D030038I21Rik	signal peptide, CUB domain, EGF-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53444069-4	chr11	53443569	53444569	+	880.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	10783.0	NM_008110	14566.0	Mm.9714	NM_008110	ENSMUSG00000018238	Gdf9	Gdf-9	growth differentiation factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53609483-2	chr11	53608983	53609983	+	880.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7855.0	NR_027491	16189.0	Mm.276360	NM_021283	ENSMUSG00000000869	Il4	BSF-1|Il-4	interleukin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-142757704-4	chr6	142757209	142758209	+	880.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009908, intron 1 of 7)	intron (NM_009908, intron 1 of 7)	1023.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99216166-5	chr5	99215711	99216711	+	880.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36716.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132090019-4	chr2	132089532	132090532	+	880.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355431, intron 4 of 6)	intron (NM_001355431, intron 4 of 6)	55076.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-17004323-4	chr11	17003809	17004809	+	880.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	4409.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44356563-4	chr7	44356107	44357107	+	880.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034115, intron 24 of 24)	intron (NM_001034115, intron 24 of 24)	18423.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-28659367-3	chr19	28658886	28659886	+	880.455566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175459, intron 2 of 10)	intron (NM_175459, intron 2 of 10)	-18838.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84845925-5	chr8	84845322	84846322	+	880.453369	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007591, intron 3 of 8)	intron (NM_007591, intron 3 of 8)	1109.0	NM_007591	12317.0	Mm.1971	NM_007591	ENSMUSG00000003814	Calr	CRT|Calregulin	calreticulin	protein-coding	20.5	62.5	51.5	29.0	75.0	47.0
Merged-chr4-150546922-3	chr4	150546424	150547424	+	880.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	105250.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	1.0	10.0	4.0	13.5	36.0	16.5
Merged-chr10-120227787-3	chr10	120227272	120228272	+	880.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025431, intron 1 of 2)	intron (NM_025431, intron 1 of 2)	712.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82834629-3	chr11	82834124	82835124	+	880.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164570, intron 1 of 7)	B2_Mm1t|SINE|B2	-5581.0	NM_026097	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-74271411-4	chr4	74270924	74271924	+	880.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356561, intron 2 of 20)	intron (NM_001356561, intron 2 of 20)	19545.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129565142-4	chr2	129564578	129565578	+	880.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27761.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	10.5	19.5	6.5	3.5	5.5	1.5
Merged-chr5-111133310-3	chr5	111132794	111133794	+	880.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	129150.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	1.0	0.0	6.5	0.0	0.0	0.0
Merged-chr9-92207541-4	chr9	92207051	92208051	+	880.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195693, intron 5 of 6)	intron (NM_001195693, intron 5 of 6)	14615.0	NM_001195693	100504689.0	Mm.464262	NM_001195693	ENSMUSG00000095654	Plscr5	331000	phospholipid scramblase family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132343831-4	chr1	132343334	132344334	+	880.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24114.0	NM_001311108	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	5.5	35.5	15.0	1.0	1.0	0.5
Merged-chr9-89205595-4	chr9	89205098	89206098	+	880.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007534, intron 1 of 1)	intron (NM_007534, intron 1 of 1)	-5592.0	NM_026829	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104432016-3	chr3	104431588	104432588	+	880.366699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79830.0	NM_001025067	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	0.0	0.0	1.5	0.0	3.5	2.5
Merged-chr15-93294682-4	chr15	93294182	93295182	+	880.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024189, intron 2 of 3)	Lx7|LINE|L1	-19503.0	NM_001346785	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31130035-2	chr3	31129535	31130535	+	880.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19885.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11004870-2	chr16	11004370	11005370	+	880.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-4028.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31295213-2	chr2	31294713	31295713	+	880.333374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019681, exon 8 of 8)	3' UTR (NM_019681, exon 8 of 8)	49290.0	NM_019681	14299.0	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51481258-4	chr3	51480741	51481741	+	880.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2725.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107671690-3	chr3	107671183	107672183	+	880.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145542, intron 6 of 16)	intron (NM_145542, intron 6 of 16)	24373.0	NM_001357113	229709.0	Mm.220328	NM_145542	ENSMUSG00000027893	Ahcyl1	1110034F20Rik|AA409031|AA414901|Ahcy-rs3|DCAL|Irbit	S-adenosylhomocysteine hydrolase-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-69545188-3	chr13	69544687	69545687	+	880.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11323.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173702923-3	chr2	173702456	173703456	+	880.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_024436)	TTS (NM_024436)	-1808.0	NR_105758	102465173.0		NR_105758	ENSMUSG00000098588	Mir6340	Gm27909|mmu-mir-6340	microRNA 6340	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29420716-3	chr19	29420198	29421198	+	880.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 1 of 5)	intron (NM_021396, intron 1 of 5)	9779.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11454527-3	chr4	11454022	11455022	+	880.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31436.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65038466-3	chr5	65037951	65038951	+	880.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026667, intron 12 of 13)	MIR|SINE|MIR	68133.0	NR_030577	100124451.0		NR_030577	ENSMUSG00000077042	Mir574	Mirn574|mir-574|mmu-mir-574	microRNA 574	ncRNA	0.0	13.5	0.5	0.0	3.0	2.0
Merged-chr1-78895466-3	chr1	78894967	78895967	+	880.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151519, intron 3 of 3)	intron (NR_151519, intron 3 of 3)	78556.0	NM_021342	57814.0	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding	7.5	17.5	15.0	12.0	25.5	25.0
Merged-chr16-30039417-4	chr16	30039040	30040040	+	880.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045878)	promoter-TSS (NR_045878)	-61.0	NR_045878	71528.0	Mm.297640	NR_045878		9030404E10Rik	-	RIKEN cDNA 9030404E10 gene	ncRNA	1.0	0.0	2.0	0.0	0.0	1.5
Merged-chr1-58723829-1	chr1	58723329	58724329	+	880.3333130000001	f0_balb.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	-6723.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45296731-3	chr9	45296228	45297228	+	880.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22372.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17712101-4	chr12	17711602	17712602	+	880.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	21293.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	112.5	434.5	289.5	157.0	343.0	268.5
Merged-chr3-107630746-4	chr3	107630247	107631247	+	880.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153563, intron 1 of 20)	intron (NM_153563, intron 1 of 20)	963.0	NM_153563	229707.0	Mm.278643	NM_153563	ENSMUSG00000014601	Strip1	6330569M22Rik|6530401O14Rik|Fam40a	striatin interacting protein 1	protein-coding	1.0	17.0	3.5	1.0	19.0	3.5
Merged-chr1-165724395-4	chr1	165723876	165724876	+	880.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-16282.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121931161-4	chr14	121930658	121931658	+	880.270874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 4 of 8)	MLT1F1|LTR|ERVL-MaLR	-15384.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	4.5	13.0	3.5	13.0	22.0	11.5
Merged-chr8-92772409-3	chr8	92771982	92772982	+	880.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	-54815.0	NM_008610	17390.0	Mm.29564	NM_008610	ENSMUSG00000031740	Mmp2	Clg4a|GelA|MMP-2	matrix metallopeptidase 2	protein-coding	5.0	2.5	0.0	9.5	9.0	5.5
Merged-chr11-87428051-5	chr11	87427538	87428538	+	880.2666630000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 1 of 30)	PB1D7|SINE|Alu	447.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	12.0	5.5	4.5	12.0	5.5	4.5
Merged-chr1-43561308-4	chr1	43560811	43561811	+	880.2625119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 4 of 4)	intron (NM_010879, intron 4 of 4)	115560.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3743406-4	chr4	3742898	3743898	+	880.25415	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 4 of 12)	intron (NM_001111096, intron 4 of 12)	28434.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	8.5	36.5	26.0	8.5	35.0	23.5
Merged-chr7-129339419-4	chr7	129338912	129339912	+	880.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080963, intron 5 of 6)	intron (NM_001080963, intron 5 of 6)	82318.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17375764-4	chr17	17375263	17376263	+	880.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025934, intron 1 of 9)	intron (NM_025934, intron 1 of 9)	1431.0	NM_025934	67045.0	Mm.35117	NM_025934	ENSMUSG00000023852	Riok2	2010110K24Rik|2410085M17Rik	RIO kinase 2	protein-coding	54.0	61.0	25.5	14.0	5.5	1.0
Merged-chr14-13891821-2	chr14	13891324	13892324	+	880.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69489.0	NM_001285780	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	36.0	10.0	10.0	5.0	7.0	11.5
Merged-chr2-103672812-4	chr2	103672249	103673249	+	880.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	88521.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	0.5	12.5	2.0	0.5	10.5	12.0
Merged-chr2-59155557-4	chr2	59155047	59156047	+	880.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 1 of 13)	Lx4A|LINE|L1	5136.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-125389036-2	chr1	125388536	125389536	+	880.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	46691.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46707532-4	chr19	46707123	46708123	+	880.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020577, intron 1 of 10)	intron (NM_020577, intron 1 of 10)	180.0	NM_020577	57344.0	Mm.28566	NM_020577	ENSMUSG00000003559	As3mt	2310045H08Rik|Cyt19	arsenic (+3 oxidation state) methyltransferase	protein-coding	7.0	16.5	25.0	12.5	29.0	20.5
Merged-chr3-136322788-4	chr3	136322276	136323276	+	880.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 1 of 16)	intron (NM_001033350, intron 1 of 16)	3290.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	33.0	84.5	44.5	63.5	58.5	42.5
Merged-chr2-45346564-4	chr2	45346066	45347066	+	880.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-229124.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29229432-6	chr7	29228993	29229993	+	880.236084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033525, intron 1 of 2)	intron (NM_001033525, intron 1 of 2)	3029.0	NM_001033525	52150.0	Mm.24877	NM_001033525	ENSMUSG00000046410	Kcnk6	D7Ertd764e|Toss|Twik2	potassium inwardly-rectifying channel, subfamily K, member 6	protein-coding	25.5	55.5	26.5	27.0	56.0	32.0
Merged-chr16-65454029-4	chr16	65453532	65454532	+	880.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-66597.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	6.0	8.0	6.5	10.5	4.0	4.5
Merged-chr5-139288252-8	chr5	139287784	139288784	+	880.21875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	34787.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74523768-4	chr11	74523273	74524273	+	880.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	66385.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115060255-4	chr5	115059762	115060762	+	880.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029012, intron 1 of 10)	Lx5c|LINE|L1	47700.0	NM_001271591	100502825.0	Mm.361657	NM_001271590		Rpl37rt	EyeLinc4|Gm13826	ribosomal protein L37, retrotransposed	protein-coding	0.0	1.0	11.5	0.0	4.0	2.5
Merged-chr12-79208911-4	chr12	79208388	79209388	+	880.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030017)	promoter-TSS (NM_030017)	-25.0	NM_001313971	77974.0	Mm.274373	NM_030017	ENSMUSG00000021123	Rdh12	-	retinol dehydrogenase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80955830-4	chr10	80955337	80956337	+	880.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	25746.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180312488-4	chr1	180311894	180312894	+	880.1726070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18082.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91312909-3	chr12	91312418	91313418	+	880.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181815, intron 10 of 25)	RSINE1|SINE|B4	71491.0	NM_181815	75216.0	Mm.312204	NM_181815	ENSMUSG00000061533	Cep128	4930534B04Rik|5430424K18Rik|AI449708|AI480494|E230024F20	centrosomal protein 128	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12464882-3	chr19	12464384	12465384	+	880.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010821, exon 2 of 2)	3' UTR (NM_010821, exon 2 of 2)	4105.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	263.0	607.5	543.0	289.5	709.0	562.5
Merged-chr1-136640122-3	chr1	136639620	136640620	+	880.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15219.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-10466087-4	chr3	10465600	10466600	+	880.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25970.0	NM_001127191	74718.0	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-121169918-3	chr2	121169330	121170330	+	880.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290819, exon 1 of 5)	exon (NM_001290819, exon 1 of 5)	1295.0	NM_001290819	99334.0	Mm.188422	NM_178889	ENSMUSG00000050619	Zscan29	AW125441|Zfp690	zinc finger SCAN domains 29	protein-coding	8.5	2.0	9.0	8.0	1.5	11.5
Merged-chr4-146480753-2	chr4	146480253	146481253	+	880.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21247.0	NM_001243138	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-15067925-2	chr14	15067425	15068425	+	880.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	247110.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	0.0	6.0	2.5	0.0	6.0	2.5
Merged-chr10-8871801-2	chr10	8871301	8872301	+	880.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	14269.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	30.0	46.0	44.0	19.0	37.0	21.0
Merged-chr2-128713727-2	chr2	128713238	128714238	+	880.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	14823.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	38.5	36.0	54.0	26.0	68.5	55.0
Merged-chr6-134171376-2	chr6	134170876	134171876	+	880.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	ORR1D2|LTR|ERVL-MaLR	135676.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	6.5	28.5	9.5	11.0	11.5	19.0
Merged-chr7-141216421-4	chr7	141215954	141216954	+	880.1416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025886, intron 1 of 5)	intron (NM_025886, intron 1 of 5)	594.0	NM_025886	66985.0	Mm.21202	NM_025886	ENSMUSG00000038618	Rassf7	2400009B11Rik|AW210608	Ras association (RalGDS/AF-6) domain family (N-terminal) member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-133046100-3	chr1	133045598	133046598	+	880.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001099276)	promoter-TSS (NM_001099276)	86.0	NM_001099276	240752.0	Mm.387308	NM_001099276	ENSMUSG00000026447	Pik3c2b	C330011J12Rik|Gm199|PI3K-C2beta|PI3KC2beta	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta	protein-coding	1.5	13.5	1.5	0.5	7.5	3.5
Merged-chr4-59534053-4	chr4	59533543	59534543	+	880.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178164, intron 1 of 13)	intron (NM_178164, intron 1 of 13)	15321.0	NM_178164	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58589654-3	chr13	58589148	58590148	+	880.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022317, intron 1 of 17)	intron (NM_022317, intron 1 of 17)	21229.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0.0	1.5	1.0	0.0	1.5	1.0
Merged-chr13-59676962-4	chr13	59676398	59677398	+	880.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1114.0	NM_027307	105348.0	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	12.0	5.5	7.0	0.5	1.0	5.5
Merged-chr7-55874937-4	chr7	55874443	55875443	+	880.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001164661, exon 7 of 32)	exon (NM_001164661, exon 7 of 32)	32872.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115235495-4	chr5	115235003	115236003	+	880.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026398)	promoter-TSS (NM_026398)	-348.0	NM_026398	117109.0	Mm.24636	NM_026398	ENSMUSG00000060152	Pop5	1500019J17Rik|2700077E03Rik|AW049989|Rnasep3	processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)	protein-coding	0.5	1.5	1.0	0.0	0.0	3.0
Merged-chr8-69080577-3	chr8	69080117	69081117	+	880.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153054, intron 1 of 16)	L1MB2|LINE|L1	-8119.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	3.5	1.0	1.5	4.0	9.5	4.0
Merged-chr2-32350640-4	chr2	32350144	32351144	+	880.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010065, intron 1 of 20)	intron (NM_010065, intron 1 of 20)	2685.0	NM_001301737	13429.0	Mm.44736	NM_010065	ENSMUSG00000026825	Dnm1	AI838169|Dnm|Ftfl|mKIAA4093	dynamin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-106887679-7	chr5	106887178	106888178	+	880.0714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177873, intron 20 of 39)	intron (NM_177873, intron 20 of 39)	38212.0	NM_177873	330149.0	Mm.121664	NM_177873	ENSMUSG00000043410	Hfm1	A330009G12Rik|Gm1046|Mer3|Sec63d1	HFM1, ATP-dependent DNA helicase homolog	protein-coding	0.0	0.0	1.5	0.0	1.5	6.0
Merged-chr17-5187670-4	chr17	5187164	5188164	+	880.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	192590.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128933821-3	chr10	128933351	128934351	+	880.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330160)	promoter-TSS (NM_001330160)	38.0	NM_001330160	16404.0	Mm.179747	NM_008398	ENSMUSG00000025348	Itga7	[a]7|alpha7	integrin alpha 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-30503946-3	chr18	30503474	30504474	+	880.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	231109.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91637642-4	chr12	91637134	91638134	+	880.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175367, exon 7 of 7)	3' UTR (NM_175367, exon 7 of 7)	-47147.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136160313-4	chr4	136159828	136160828	+	880.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11946.0	NM_177733	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-48829820-4	chr6	48829311	48830311	+	880.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11177.0	NM_023056	65963.0	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22677499-2	chr11	22676999	22677999	+	880.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	165216.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122993210-2	chr8	122992710	122993710	+	880.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	49074.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0.0	2.0	2.5	0.0	0.0	2.0
Merged-chr16-43454696-2	chr16	43454196	43455196	+	880.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	-34500.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55113464-2	chr14	55112964	55113964	+	880.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177049, exon 3 of 6)	exon (NM_177049, exon 3 of 6)	3471.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97656509-2	chr11	97656009	97657009	+	880.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6903.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	6.0	11.0	7.0	12.0	1.5	5.0
Merged-chr8-75158544-2	chr8	75158044	75159044	+	880.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	49035.0	NM_008566	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	0.0	4.0	0.0	0.0	0.0	4.0
Merged-chr2-113305566-4	chr2	113305062	113306062	+	880.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	19830.0	NM_029232	75275.0	Mm.159484	NM_029232	ENSMUSG00000041255	Tmco5b	4930563P21Rik	transmembrane and coiled-coil domains 5B	protein-coding	0.0	0.0	2.0	0.0	3.0	0.0
Merged-chr11-50931049-2	chr11	50930549	50931549	+	880.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013744, intron 1 of 4)	intron (NM_013744, intron 1 of 4)	586.0	NM_013744	27274.0	Mm.74670	NM_013744	ENSMUSG00000020335	Zfp354b	Kid2|Tcf17l1|Znf354b	zinc finger protein 354B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-56626706-4	chr13	56626200	56627200	+	880.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155548, intron 6 of 16)	L3b|LINE|CR1	17114.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	1.0	7.5	8.0	4.0	4.0	5.5
Merged-chr1-34463464-2	chr1	34462964	34463964	+	880.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011206, intron 4 of 14)	intron (NM_011206, intron 4 of 14)	3718.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-33291009-2	chr4	33290509	33291509	+	880.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19302.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156956513-2	chr1	156956013	156957013	+	880.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16887.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	7.5	1.5	6.0	4.0	17.5	6.0
Merged-chr2-110205097-3	chr2	110204562	110205562	+	880.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100663.0	NM_130452	170442.0	Mm.27335	NM_130452	ENSMUSG00000041660	Bbox1	AI874739	butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase)	protein-coding	1.5	0.5	0.0	0.5	0.0	0.0
Merged-chr10-61722496-2	chr10	61721996	61722996	+	880.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153779, intron 1 of 8)	(GTTTG)n|Simple_repeat|Simple_repeat	1847.0	NM_153779	71361.0	Mm.286309	NM_153779	ENSMUSG00000020085	Aifm2	5430437E11Rik|Amid|D730001I10Rik|PRG3	apoptosis-inducing factor, mitochondrion-associated 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126553126-1	chr8	126552626	126553626	+	880.0	f1_balb.idr	Intergenic	Intergenic	40310.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	1.5	0.0	1.5	0.0	5.0	0.0
Merged-chr10-99166588-3	chr10	99166087	99167087	+	880.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	58452.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-137436352-1	chr7	137435852	137436852	+	880.0	f1_balb.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-1221.0	NM_001348093	30926.0	Mm.267692	NM_023140	ENSMUSG00000031068	Glrx3	PICOT|Txnl2	glutaredoxin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21412431-2	chr9	21411931	21412931	+	880.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045742)	promoter-TSS (NR_045742)	594.0	NM_021888	60507.0	Mm.436579	NM_021888	ENSMUSG00000002825	Qtrt1	2610028E17Rik|Tgt	queuine tRNA-ribosyltransferase catalytic subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109471496-3	chr11	109471020	109472020	+	880.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029842, intron 1 of 5)	intron (NM_001029842, intron 1 of 5)	1709.0	NM_134038	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3793900-1	chr4	3793400	3794400	+	880.0	f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	41755.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	1.0	3.5	6.0	1.5	1.5	6.0
Merged-chr1-127322454-3	chr1	127321949	127322949	+	880.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 4 of 17)	(TG)n|Simple_repeat|Simple_repeat	117463.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21328752-3	chr5	21328256	21329256	+	880.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 4 of 18)	intron (NM_029195, intron 4 of 18)	-43917.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165735016-3	chr1	165734520	165735520	+	880.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26926.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137860210-2	chr4	137859598	137860598	+	880.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2139.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	2.5	0.5	5.5	0.0	0.5	9.0
Merged-chr5-27791024-1	chr5	27790524	27791524	+	880.0	f0_balb.idr	intron (NM_018878, intron 1 of 20)	CpG	526.0	NM_018878	55982.0	Mm.277190	NM_018878	ENSMUSG00000002221	Paxip1	D5Ertd149e|PTIP	PAX interacting (with transcription-activation domain) protein 1	protein-coding	37.0	113.0	91.5	19.0	118.5	65.5
Merged-chr6-108740737-4	chr6	108740221	108741221	+	880.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-42338.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	0.0	0.0	0.0	0.0	5.5	1.0
Merged-chr12-17776826-2	chr12	17776326	17777326	+	880.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361645, intron 2 of 4)	intron (NM_001361645, intron 2 of 4)	86017.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0.0	3.0	8.5	0.0	8.5	3.5
Merged-chr11-11884937-1	chr11	11884437	11885437	+	880.0	f1_c57bl6.idr	non-coding (NR_045178, exon 4 of 4)	non-coding (NR_045178, exon 4 of 4)	5471.0	NM_016672	13195.0	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr18-82782497-2	chr18	82781997	82782997	+	880.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23458.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-42325412-4	chr6	42324909	42325909	+	880.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113327)	promoter-TSS (NM_001113327)	-769.0	NM_001113327	76156.0	Mm.234314	NM_029528	ENSMUSG00000029861	Fam131b	6330503C03Rik|6530406I18Rik|AV277466	family with sequence similarity 131, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21392840-4	chr16	21392296	21393296	+	880.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30322.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92975336-3	chr1	92974833	92975833	+	880.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271766)	promoter-TSS (NM_001271766)	-14.0	NM_001271766	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139248323-2	chr4	139247823	139248823	+	880.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 2 of 9)	intron (NM_001037761, intron 2 of 9)	54212.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	3.5	14.0	14.5	4.5	7.0	10.0
Merged-chr10-78412422-4	chr10	78411943	78412943	+	880.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010925, intron 1 of 12)	intron (NM_010925, intron 1 of 12)	600.0	NM_010925	18114.0	Mm.38344	NM_010925	ENSMUSG00000061032	Rrp1	AL033305|AL033306|AU018604|NNP-1|Nnp1	ribosomal RNA processing 1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-73811634-2	chr18	73811139	73812139	+	880.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145494, intron 1 of 15)	intron (NM_145494, intron 1 of 15)	3753.0	NM_145494	107029.0	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	0.0	8.5	4.5	1.0	18.0	3.0
Merged-chr15-97871236-3	chr15	97870730	97871730	+	880.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009504, intron 4 of 9)	intron (NM_009504, intron 4 of 9)	-26728.0	NM_001204278	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45559175-2	chr19	45558675	45559675	+	880.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330506, intron 3 of 9)	intron (NM_001330506, intron 3 of 9)	1389.0	NM_001330506	56626.0	Mm.46509	NM_020032	ENSMUSG00000025218	Poll	1110003P06Rik|AV007317	polymerase (DNA directed), lambda	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10565476-2	chr17	10564976	10565976	+	880.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 4 of 4)	MTE2b|LTR|ERVL-MaLR	109260.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-30632361-2	chr15	30631861	30632861	+	880.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 5 of 21)	intron (NM_001355502, intron 5 of 21)	-406765.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	0.0	0.0	0.0	6.5	0.0	4.5
Merged-chr1-45903527-2	chr1	45903027	45904027	+	880.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	22067.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23699423-2	chr17	23698923	23699923	+	880.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15397.0	NM_020293	56863.0	Mm.491368	NM_020293	ENSMUSG00000066720	Cldn9	nmf329	claudin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166555821-2	chr2	166555321	166556321	+	880.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8701.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84944236-3	chr15	84943788	84944788	+	880.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7335.0	NR_037206	100526461.0		NR_037206	ENSMUSG00000080441	Mir1249	mir-1249|mmu-mir-1249	microRNA 1249	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32697286-2	chr16	32696786	32697786	+	880.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24132.0	NM_001289443	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116194142-2	chr6	116193642	116194642	+	880.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177412)	promoter-TSS (NM_177412)	-768.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99165105-4	chr10	99164599	99165599	+	880.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	56964.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34118223-8	chr17	34117710	34118710	+	879.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204973, intron 2 of 12)	intron (NM_001204973, intron 2 of 12)	1690.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	0.5	8.5	10.0	5.5	15.0	4.5
Merged-chr10-79682901-5	chr10	79682353	79683353	+	879.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359818, intron 1 of 4)	intron (NM_001359818, intron 1 of 4)	658.0	NM_001359817	216150.0	Mm.21981	NM_177613	ENSMUSG00000020307	Cdc34	AI327276|E2-CDC34|UBE2R1	cell division cycle 34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-72685053-4	chr14	72684584	72685584	+	879.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 1 of 25)	intron (NM_207636, intron 1 of 25)	24919.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149486017-3	chr4	149485505	149486505	+	879.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133435)	promoter-TSS (NM_133435)	739.0	NM_026963	69151.0	Mm.464434	NM_026963	ENSMUSG00000028990	Lzic	1810030J04Rik|AW047580	leucine zipper and CTNNBIP1 domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-21708629-3	chr17	21708124	21709124	+	879.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001008501, exon 2 of 6)	5' UTR (NM_001008501, exon 2 of 6)	883.0	NM_001008501	240034.0	Mm.34723	NM_001008501	ENSMUSG00000067928	Zfp760	9430018I06|BC029103	zinc finger protein 760	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120989793-3	chr11	120989259	120990259	+	879.93335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027874, intron 1 of 9)	intron (NM_027874, intron 1 of 9)	1574.0	NM_139059	104318.0	Mm.216227	NM_027874	ENSMUSG00000025162	Csnk1d	1200006A05Rik|AA409348|D930010H05Rik	casein kinase 1, delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115049450-4	chr11	115048958	115049958	+	879.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-1163.0	NM_199201	382551.0	Mm.424732	NM_199201	ENSMUSG00000069607	Cd300ld3	AY457049|Cd300lh|Clm3|Lmir7|clm-3	CD300 molecule like family member D3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102258331-4	chr7	102257849	102258849	+	879.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8231.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	3.5	4.5	1.5	0.0	0.0	4.0
Merged-chr12-34701664-4	chr12	34701176	34702176	+	879.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-172787.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	6.5	25.0	17.0	30.0	39.5	20.0
Merged-chr11-117955852-3	chr11	117955363	117956363	+	879.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13503.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168570155-3	chr2	168569665	168570665	+	879.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291173, intron 1 of 8)	intron (NM_001291173, intron 1 of 8)	20200.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0.0	0.0	1.0	0.0	0.0	0.5
Merged-chr11-121652707-3	chr11	121652201	121653201	+	879.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178664, intron 3 of 12)	intron (NM_178664, intron 3 of 12)	20450.0	NM_178664	210004.0	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-62294555-3	chr13	62294062	62295062	+	879.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	88612.0	NM_001162910	100041979.0	Mm.445930	NM_001162910	ENSMUSG00000094942	Gm3604	-	predicted gene 3604	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121671558-4	chr9	121671064	121672064	+	879.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011703, exon 13 of 13)	3' UTR (NM_011703, exon 13 of 13)	28848.0	NM_011703	22354.0	Mm.282007	NM_011703	ENSMUSG00000032528	Vipr1	AV071699|VIP-R1|VPAC1	vasoactive intestinal peptide receptor 1	protein-coding	1.0	2.5	0.0	3.5	0.0	1.0
Merged-chr9-56463994-4	chr9	56463498	56464498	+	879.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025812, intron 1 of 9)	intron (NM_025812, intron 1 of 9)	45379.0	NM_025812	66867.0	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21387582-4	chr5	21387084	21388084	+	879.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	14911.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122989272-4	chr5	122988759	122989759	+	879.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045820)	promoter-TSS (NR_045820)	-95.0	NR_045820	109202.0	Mm.30769	NM_175405	ENSMUSG00000056735	A930024E05Rik	-	RIKEN cDNA A930024E05 gene	ncRNA	14.5	23.5	34.5	19.5	70.0	33.5
Merged-chr13-45955946-4	chr13	45955460	45956460	+	879.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	9031.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-9572064-4	chr15	9571574	9572574	+	879.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42198.0	NM_008372	16197.0	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130805937-4	chr4	130805464	130806464	+	879.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	Tigger7|DNA|TcMar-Tigger	13427.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58622199-2	chr15	58621699	58622699	+	879.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	201228.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32721081-2	chr5	32720602	32721602	+	879.833374	f0_balb.idr|f1_balb.idr	Intergenic	URR1B|DNA|hAT-Charlie	25240.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0.0	8.0	0.0	2.0	2.5	0.0
Merged-chr18-66469519-3	chr18	66469020	66470020	+	879.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	10916.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3926546-2	chr19	3926046	3927046	+	879.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_026316, intron 1 of 9)	intron (NM_026316, intron 1 of 9)	3170.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54475929-4	chr13	54475417	54476417	+	879.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12BD_Mm|LTR|ERVK	-7077.0	NM_028597	73666.0	Mm.292487	NM_028597	ENSMUSG00000025872	Thoc3	2410044K02Rik|AL033344	THO complex 3	protein-coding	8.0	18.5	0.5	10.0	7.5	6.0
Merged-chr11-117870799-4	chr11	117870308	117871308	+	879.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027919, intron 3 of 6)	intron (NM_027919, intron 3 of 6)	2718.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-99028067-3	chr6	99027559	99028559	+	879.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 4 of 17)	intron (NM_001197321, intron 4 of 17)	239.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-142708647-4	chr6	142708135	142709135	+	879.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6361.0	NM_001310143	20928.0	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53802038-4	chr19	53801542	53802542	+	879.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170847, intron 1 of 13)	intron (NM_001170847, intron 1 of 13)	-90189.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0.0	3.0	1.5	0.0	3.0	0.5
Merged-chr8-72244791-3	chr8	72244284	72245284	+	879.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007456, intron 1 of 11)	intron (NM_007456, intron 1 of 11)	4766.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	8.0	8.0	7.0	16.0	1.5	15.0
Merged-chr17-34934051-4	chr17	34933562	34934562	+	879.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010893, exon 4 of 6)	exon (NM_010893, exon 4 of 6)	2809.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61454737-4	chr18	61454225	61455225	+	879.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	29882.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	0.0	9.5	3.5	0.0	9.0	4.5
Merged-chr15-72549539-4	chr15	72549040	72550040	+	879.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3261.0	NM_001033876	223604.0	Mm.386856	NM_001033876	ENSMUSG00000036760	Kcnk9	Task3	potassium channel, subfamily K, member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87907484-3	chr1	87906982	87907982	+	879.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177646, intron 3 of 29)	L1MD1|LINE|L1	-53183.0	NR_136921	100503175.0	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-93901070-3	chr13	93900542	93901542	+	879.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009712, intron 6 of 7)	intron (NM_009712, intron 6 of 7)	110265.0	NR_049198	100885837.0		NR_049198	ENSMUSG00000093480	Mir5624	Gm25075|mir-5624|mmu-mir-5624	microRNA 5624	ncRNA	0.0	3.5	1.5	4.5	0.5	3.5
Merged-chr7-45562375-3	chr7	45561874	45562874	+	879.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025330, intron 5 of 8)	intron (NM_025330, intron 5 of 8)	7446.0	NM_025330	66065.0	Mm.285710	NM_025330	ENSMUSG00000030825	Hsd17b14	0610039E24Rik|Dhrs10|retSDR3	hydroxysteroid (17-beta) dehydrogenase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-62470137-3	chr13	62469630	62470630	+	879.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3318.0	NM_001136496	71508.0	Mm.442497	NM_178875	ENSMUSG00000113450	Zfp935	8430426H19Rik|Es113	zinc finger protein 935	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-78046201-3	chr2	78045703	78046703	+	879.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33A_|LTR|ERVL	-4974.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55148962-4	chr11	55148425	55149425	+	879.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172258, intron 2 of 10)	(TG)n|Simple_repeat|Simple_repeat	2781.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-101075188-5	chr12	101074664	101075664	+	879.76001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160214, intron 1 of 14)	intron (NM_001160214, intron 1 of 14)	-7287.0	NR_038048	319760.0	Mm.440198	NM_176997	ENSMUSG00000097121	D130020L05Rik	9430007L23Rik	RIKEN cDNA D130020L05 gene	ncRNA	13.0	6.0	5.5	4.0	18.5	12.5
Merged-chr7-16047114-4	chr7	16046656	16047656	+	879.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24689.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72758823-4	chr6	72758335	72759335	+	879.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079822, intron 3 of 12)	ORR1D2-int|LTR|ERVL-MaLR	30210.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	0.5	0.0	10.5	0.0	17.0	1.5
Merged-chr2-144219454-4	chr2	144218920	144219920	+	879.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30130.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-42337227-4	chr13	42336730	42337730	+	879.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35754.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23982358-4	chr17	23981847	23982847	+	879.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7117.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	52.5	131.5	67.5	37.5	101.0	76.0
Merged-chr10-77282986-4	chr10	77282493	77283493	+	879.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23693.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-94524373-2	chr6	94523873	94524873	+	879.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_026255, intron 3 of 9)	intron (NM_026255, intron 3 of 9)	24059.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67590409-2	chr10	67589909	67590909	+	879.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18450.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-81675768-3	chr12	81675273	81676273	+	879.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	44524.0	NM_001033149	69480.0	Mm.130002	NM_001033149	ENSMUSG00000042734	Ttc9	-	tetratricopeptide repeat domain 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44190294-4	chr16	44189813	44190813	+	879.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029889, intron 1 of 7)	intron (NM_001029889, intron 1 of 7)	16916.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44305341-4	chr13	44304829	44305829	+	879.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-88842.0	NR_045088	100503592.0	Mm.184925	NR_045088	ENSMUSG00000113186	A330076C08Rik	-	RIKEN cDNA A330076C08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107510520-4	chr11	107510015	107511015	+	879.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30987.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	5.0	0.0	1.0	0.0	5.0	1.5
Merged-chr4-147432412-5	chr4	147431895	147432895	+	879.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	-120882.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146643279-3	chr6	146642723	146643723	+	879.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025315, intron 1 of 3)	intron (NM_025315, intron 1 of 3)	644.0	NM_025315	108098.0	Mm.26212	NM_025315	ENSMUSG00000030291	Med21	0610007L03Rik|AI449604|D19234|D6Ertd782e|Srb7|Surb7	mediator complex subunit 21	protein-coding	50.5	114.5	101.5	50.5	119.5	75.0
Merged-chr13-45963075-3	chr13	45962575	45963575	+	879.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 1 of 6)	intron (NM_001199304, intron 1 of 6)	1916.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111546455-3	chr8	111545964	111546964	+	879.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168623, intron 1 of 4)	intron (NM_001168623, intron 1 of 4)	8121.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	4.0	7.0	5.5	3.5	10.0	4.0
Merged-chr5-75154246-6	chr5	75153697	75154697	+	879.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347719, intron 1 of 15)	intron (NM_001347719, intron 1 of 15)	1261.0	NM_001347719	18595.0	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	0.0	2.5	1.0	3.0	5.5	0.0
Merged-chr7-46739168-3	chr7	46738657	46739657	+	879.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	3823.0	NM_001357493	20208.0	Mm.148800	NM_009117	ENSMUSG00000074115	Saa1	Saa-1|Saa2	serum amyloid A 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80220604-3	chr18	80220104	80221104	+	879.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025299, intron 3 of 3)	MLT1C-int|LTR|ERVL-MaLR	13737.0	NM_001042408	27366.0	Mm.172411	NM_025299	ENSMUSG00000057130	Txnl4a	D18Wsu98e|Dim1|Txnl4|U5-15kD|U5-15kDa	thioredoxin-like 4A	protein-coding	1.0	1.0	4.0	12.5	3.5	20.0
Merged-chr4-44182592-4	chr4	44182082	44183082	+	879.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14299.0	NM_001038993	73469.0	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35423661-3	chr17	35423160	35424160	+	879.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER44A|DNA|TcMar-Tigger	-1187.0	NM_023124	15019.0	Mm.486287	NM_023124		H2-Q8	H-2Q8|MMS10-T|Ms10t|Qa-2|Qa-8|Qa8	histocompatibility 2, Q region locus 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30132125-3	chr2	30131611	30132611	+	879.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1635.0	NM_146252	70296.0	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11973616-3	chr11	11973123	11974123	+	879.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177629, intron 2 of 15)	intron (NM_001177629, intron 2 of 15)	54348.0	NM_001177629	14783.0	Mm.273117	NM_010345	ENSMUSG00000020176	Grb10	5730571D09Rik|AI325020|Meg1|mKIAA0207	growth factor receptor bound protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-106376065-2	chr4	106375565	106376565	+	879.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_183225, intron 24 of 67)	intron (NM_183225, intron 24 of 67)	59852.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120037759-6	chr9	120037406	120038406	+	879.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-14308.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	30.0	23.0	17.0	23.0	41.0	30.5
Merged-chr3-65442459-3	chr3	65441939	65442939	+	879.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49886.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72165893-3	chr6	72165397	72166397	+	879.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-42700.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75899697-3	chr14	75899191	75900191	+	879.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026816, intron 7 of 7)	intron (NM_026816, intron 7 of 7)	51768.0	NR_028481	100303751.0	Mm.484707	NR_028481	ENSMUSG00000065147	Snora31	MBI-161	small nucleolar RNA, H/ACA box 31	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-78791668-4	chr7	78791160	78792160	+	879.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153793, intron 4 of 5)	intron (NR_153793, intron 4 of 5)	8529.0	NM_001360702	67994.0	Mm.297033	NM_026498	ENSMUSG00000030611	Mrps11	0710005I03Rik|C79873|MRP-S11|S11mt	mitochondrial ribosomal protein S11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59322545-2	chr10	59322045	59323045	+	879.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316371)	promoter-TSS (NM_001316371)	-751.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150859879-4	chr2	150859370	150860370	+	879.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 1 of 12)	intron (NR_151505, intron 1 of 12)	-17300.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27488089-4	chr7	27487603	27488603	+	879.662476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018820, intron 1 of 1)	intron (NM_018820, intron 1 of 1)	1150.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126583350-4	chr7	126582822	126583822	+	879.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001329789)	promoter-TSS (NM_001329789)	-86.0	NM_009907	12752.0	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131505910-4	chr2	131505405	131506405	+	879.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177840, intron 1 of 3)	intron (NM_001177840, intron 1 of 3)	14043.0	NM_001177838	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-96804520-4	chr5	96804034	96805034	+	879.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013470, intron 2 of 12)	MER21C|LTR|ERVL	11149.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	16.5	48.5	9.0	1.0	4.0	10.0
Merged-chr15-34428923-3	chr15	34428388	34429388	+	879.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358780, intron 14 of 18)	intron (NM_001358780, intron 14 of 18)	14337.0	NM_009083	19946.0	Mm.358632	NM_009083	ENSMUSG00000058600	Rpl30	-	ribosomal protein L30	protein-coding	3.5	0.0	2.0	0.5	0.0	0.0
Merged-chr2-31076006-3	chr2	31075493	31076493	+	879.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	20507.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124919867-4	chr6	124919351	124920351	+	879.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152158, intron 1 of 1)	intron (NR_152158, intron 1 of 1)	-1905.0	NM_026988	69202.0	Mm.142187	NM_026988	ENSMUSG00000030122	Ptms	2610009E16Rik	parathymosin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-127222300-4	chr1	127221855	127222855	+	879.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	17369.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	6.5	8.0	11.0	3.5	11.0	3.0
Merged-chr3-94565704-4	chr3	94565161	94566161	+	879.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082484, intron 1 of 11)	intron (NM_001082484, intron 1 of 11)	17055.0	NM_001082484	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	0.0	10.5	14.5	11.0	12.5	11.5
Merged-chr13-101548075-4	chr13	101547577	101548577	+	879.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33B|LTR|ERVL	144553.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28693293-4	chr17	28692802	28693802	+	879.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	734.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-122357233-4	chr9	122356694	122357694	+	879.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359207, intron 1 of 4)	intron (NM_001359207, intron 1 of 4)	5578.0	NM_026179	67469.0	Mm.280254	NM_026179	ENSMUSG00000032540	Abhd5	1300003D03Rik|2010002J10Rik|CDS|CGI-58|IECN5|NCIE2	abhydrolase domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35271960-4	chr2	35271479	35272479	+	879.5791630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206367, intron 2 of 17)	intron (NM_001206367, intron 2 of 17)	5235.0	NM_001206369	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-164184719-4	chr1	164184213	164185213	+	879.5750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007976, intron 9 of 24)	intron (NM_007976, intron 9 of 24)	-32496.0	NR_037987	100503816.0	Mm.398579	NR_037987	ENSMUSG00000086593	Gm16548	-	predicted gene 16548	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113622347-3	chr5	113621870	113622870	+	879.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	21233.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-130762767-3	chr7	130762259	130763259	+	879.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021314, intron 17 of 17)	intron (NM_021314, intron 17 of 17)	-11310.0	NM_001081038	330660.0	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-13027367-3	chr18	13026926	13027926	+	879.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20436.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50802320-3	chr15	50801785	50802785	+	879.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	86764.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32260833-4	chr2	32260310	32261310	+	879.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011675)	promoter-TSS (NM_011675)	-705.0	NM_011675	22245.0	Mm.425076	NM_011675	ENSMUSG00000002550	Uck1	URK1|Umpk	uridine-cytidine kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70585455-4	chr8	70584942	70585942	+	879.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 7 of 11)	intron (NM_007924, intron 7 of 11)	-9039.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	0.0	0.0	2.0	0.5	1.5	0.5
Merged-chr8-61665215-4	chr8	61664783	61665783	+	879.5125119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	-74114.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	1.0	2.0	12.5	6.5	20.5	14.5
Merged-chr9-32514274-2	chr9	32513774	32514774	+	879.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	27178.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88049085-2	chr6	88048585	88049585	+	879.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3815.0	NM_009005	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-24436370-2	chr8	24435870	24436870	+	879.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	2576.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0.0	0.0	0.5	0.0	0.0	1.0
Merged-chr11-103199105-2	chr11	103198605	103199605	+	879.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001077698)	TTS (NM_001077698)	9443.0	NM_001254724	69441.0	Mm.380648	NM_027082	ENSMUSG00000020940	1700023F06Rik	-	RIKEN cDNA 1700023F06 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81087371-2	chr10	81086871	81087871	+	879.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145365, intron 8 of 11)	B1_Mus2|SINE|Alu	11501.0	NM_145365	208677.0	Mm.294693	NM_145365	ENSMUSG00000035041	Creb3l3	BC010786|CREB-H|D10Bur1e	cAMP responsive element binding protein 3-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5797946-1	chr2	5797446	5798446	+	879.5	f0_balb.idr	intron (NM_133837, intron 11 of 12)	intron (NM_133837, intron 11 of 12)	-47088.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	18.5	7.5	16.5	10.5	18.5	30.0
Merged-chr3-116862734-2	chr3	116862234	116863234	+	879.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009146, intron 1 of 16)	B1_Mur2|SINE|Alu	1054.0	NM_009146	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113031086-2	chr12	113030586	113031586	+	879.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081170, intron 1 of 23)	intron (NM_001081170, intron 1 of 23)	16578.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87851424-3	chr1	87850895	87851895	+	879.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-1892.0	NM_177646	227333.0	Mm.277217	NM_177646	ENSMUSG00000070738	Dgkd	AI841987|D330025K09|DGKdelta|dgkd-2	diacylglycerol kinase, delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80729540-4	chr18	80729057	80730057	+	879.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16486.0	NM_001164110	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152106616-2	chr3	152106116	152107116	+	879.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016867, intron 4 of 5)	MTE2a|LTR|ERVL-MaLR	59284.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56999835-2	chr17	56999335	57000335	+	879.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025538)	TTS (NM_025538)	270.0	NM_008954	19197.0	Mm.86487	NM_008954	ENSMUSG00000002664	Pspn	PSP	persephin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3655855-2	chr2	3655355	3656355	+	879.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-57603.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4206657-2	chr12	4206157	4207157	+	879.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 14 of 21)	intron (NM_001159537, intron 14 of 21)	27308.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156030011-4	chr1	156029526	156030526	+	879.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144791, intron 4 of 6)	intron (NM_144791, intron 4 of 6)	4791.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	7.5	48.5	16.5	4.0	42.5	34.5
Merged-chr6-72534274-4	chr6	72533755	72534755	+	879.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10136.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152152002-2	chr4	152151502	152152502	+	879.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_207687, exon 1 of 16)	exon (NM_207687, exon 1 of 16)	205.0	NM_207687	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60833974-2	chr10	60833474	60834474	+	879.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2393.0	NM_001359273	107449.0	Mm.290433	NM_029770	ENSMUSG00000020099	Unc5b	6330415E02Rik|A630020F16|D10Bwg0792e|Unc5h2	unc-5 netrin receptor B	protein-coding	0.0	0.5	0.0	0.0	0.5	0.0
Merged-chr6-128849358-2	chr6	128848858	128849858	+	879.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001254946, exon 3 of 3)	3' UTR (NM_001254946, exon 3 of 3)	-23043.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40698642-2	chr19	40698142	40699142	+	879.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	38872.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.0	5.5	7.0	2.0	11.5	18.0
Merged-chr10-45004156-2	chr10	45003656	45004656	+	879.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63058.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39780518-2	chr6	39780018	39781018	+	879.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	30418.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-29151043-2	chr15	29150543	29151543	+	879.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	562361.0	NR_039542	100628607.0		NR_039542	ENSMUSG00000092639	Mir3964	mmu-mir-3964|mu-mir-3964	microRNA 3964	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-21962486-4	chr3	21961971	21962971	+	879.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114181.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-8002803-3	chr14	8002288	8003288	+	879.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331065)	promoter-TSS (NM_001331065)	-100.0	NM_025341	66082.0	Mm.181473	NM_025341	ENSMUSG00000025277	Abhd6	0610041D24Rik|AA673485|AV065425	abhydrolase domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123526974-2	chr4	123526474	123527474	+	879.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 5 of 92)	intron (NM_001199137, intron 5 of 92)	-89446.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-13517061-3	chr13	13516535	13517535	+	879.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73374.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8516301-2	chr11	8515805	8516805	+	879.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 16 of 30)	intron (NM_001083587, intron 16 of 30)	148230.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr4-147526829-2	chr4	147526329	147527329	+	879.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26448.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8923759-2	chr12	8923259	8924259	+	879.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008640, intron 1 of 6)	B3|SINE|B2	2452.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141900534-2	chr7	141900034	141901034	+	879.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347562, intron 1 of 6)	intron (NM_001347562, intron 1 of 6)	1927.0	NM_023764	54473.0	Mm.103551	NM_023764	ENSMUSG00000025139	Tollip	4930403G24Rik|4931428G15Rik	toll interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94965882-2	chr10	94965382	94966382	+	879.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-21304.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123144560-2	chr5	123144060	123145060	+	879.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040398, intron 4 of 16)	intron (NM_001040398, intron 4 of 16)	2367.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163712852-5	chr2	163712350	163713350	+	879.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 3 of 4)	intron (NM_001039390, intron 3 of 4)	18813.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170844642-3	chr1	170844162	170845162	+	879.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 4 of 15)	L1MC4|LINE|L1	23109.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23450645-4	chr13	23450131	23451131	+	879.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Thr-ACY_|tRNA|tRNA	15270.0	NM_013483	12231.0	Mm.1420	NM_013483	ENSMUSG00000000706	Btn1a1	Btn	butyrophilin, subfamily 1, member A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100681972-4	chr15	100681461	100682461	+	879.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033612, intron 5 of 7)	B1_Mur2|SINE|Alu	5959.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44083975-3	chr9	44083467	44084467	+	879.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198091)	promoter-TSS (NM_198091)	-953.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-29713486-4	chr12	29712981	29713981	+	879.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361657, intron 3 of 24)	intron (NM_001361657, intron 3 of 24)	-27036.0	NR_046080	328075.0	Mm.447832	NR_046080	ENSMUSG00000112663	C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA	63.0	155.5	122.0	16.0	36.5	23.0
Merged-chr18-68220018-4	chr18	68219470	68220470	+	879.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	Lx5b|LINE|L1	-7976.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39784720-6	chr1	39784208	39785208	+	879.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20624.0	NM_001177348	100042065.0	Mm.209678	NM_001177348	ENSMUSG00000091937	Gm3646	-	predicted gene 3646	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-60481470-2	chr9	60480970	60481970	+	879.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040426, intron 3 of 17)	intron (NM_001040426, intron 3 of 17)	29565.0	NM_001040426	207596.0	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-45919818-4	chr5	45919312	45920312	+	879.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1|DNA|hAT-Tip100	12597.0	NR_110478	78106.0	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA	25.0	71.5	29.5	11.5	20.0	19.5
Merged-chr16-30236599-4	chr16	30236120	30237120	+	879.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5B|DNA|hAT-Charlie	30912.0	NM_027904	71756.0	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131178936-13	chr2	131178414	131179414	+	879.367004	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007682, exon 1 of 1)	exon (NM_007682, exon 1 of 1)	1153.0	NM_007682	12616.0	Mm.440169	NM_007682	ENSMUSG00000068267	Cenpb	CENP-B	centromere protein B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125293655-2	chr5	125293155	125294155	+	879.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 7 of 10)	MLT1D|LTR|ERVL-MaLR	47439.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.5	2.5	5.5	2.0	10.0	1.0
Merged-chr17-87258937-2	chr17	87258447	87259447	+	879.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_139295, intron 1 of 3)	intron (NM_139295, intron 1 of 3)	7000.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	0.0	7.0	0.0	3.5	2.5	2.0
Merged-chr4-53030257-2	chr4	53029757	53030757	+	879.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013454)	TTS (NM_013454)	18377.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4909335-4	chr16	4908825	4909825	+	879.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 2 of 17)	intron (NM_001357062, intron 2 of 17)	23225.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-82846251-1	chr8	82845751	82846751	+	879.3333130000001	f0_balb.idr	Intergenic	Intergenic	-17105.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	12.0	0.0	8.5	5.5	14.0	2.0
Merged-chr15-95792479-4	chr15	95791983	95792983	+	879.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	1640.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120387527-3	chr14	120387026	120388026	+	879.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 4 of 8)	intron (NM_001360376, intron 4 of 8)	81074.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84896400-3	chr15	84895908	84896908	+	879.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44C|LTR|ERVK	-27020.0	NM_016714	18141.0	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-7610379-3	chr18	7609865	7610865	+	879.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081287, intron 1 of 16)	intron (NM_001081287, intron 1 of 16)	-2211.0	NM_001360860	75739.0	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	2.5	17.5	4.5	0.0	0.0	0.5
Merged-chr8-124751810-3	chr8	124751312	124752312	+	879.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081120)	promoter-TSS (NM_001081120)	-3.0	NM_001081120	69627.0	Mm.271600	NM_001081120	ENSMUSG00000043068	Fam89a	2310031A18Rik	family with sequence similarity 89, member A	protein-coding	0.0	0.0	0.0	4.5	0.0	6.5
Merged-chr8-85699240-4	chr8	85698741	85699741	+	879.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357288, intron 1 of 8)	intron (NM_001357288, intron 1 of 8)	-1664.0	NR_106189	102465898.0		NR_106189	ENSMUSG00000098388	Mir8109	Gm27495|mmu-mir-8109	microRNA 8109	ncRNA	0.5	0.0	0.0	0.0	0.0	4.5
Merged-chr10-36970941-3	chr10	36970414	36971414	+	879.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3630.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82920532-3	chr18	82920031	82921031	+	879.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033307)	promoter-TSS (NR_033307)	29.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126694784-3	chr7	126694289	126695289	+	879.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029420, intron 1 of 5)	MTC|LTR|ERVL-MaLR	994.0	NM_029420	75764.0	Mm.280573	NM_029420	ENSMUSG00000059772	Slx1b	1110030E23Rik|2410170E21Rik|4833422P03Rik|AI853643|Giyd1|Giyd2	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	protein-coding	3.0	7.5	2.0	3.0	7.5	1.5
Merged-chr2-114605421-3	chr2	114604931	114605931	+	879.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025675, intron 3 of 8)	L1_Mus4|LINE|L1	49533.0	NM_001356438	66632.0	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86833318-3	chr12	86832828	86833828	+	879.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	51486.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128806763-3	chr10	128806163	128807163	+	879.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001359824, exon 2 of 7)	exon (NM_001359824, exon 2 of 7)	987.0	NM_001359824	74330.0	Mm.296915	NM_028873	ENSMUSG00000025354	Dnajc14	5730551F12Rik|DNAJ|DRIP78|HDJ3|LIP6	DnaJ heat shock protein family (Hsp40) member C14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-23495604-3	chr1	23495120	23496120	+	879.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M8|LINE|L1	-78967.0	NR_151529	105243890.0	Mm.383635	NR_151529		Gm28822	-	predicted gene 28822	ncRNA	2.5	0.0	0.5	0.0	0.0	0.0
Merged-chr14-50363751-3	chr14	50363247	50364247	+	879.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_205819)	TTS (NM_205819)	5833.0	NM_205819	239081.0	Mm.291512	NM_205819	ENSMUSG00000051969	Tlr11	Gm287	toll-like receptor 11	protein-coding	0.0	8.5	1.5	0.0	0.0	0.0
Merged-chr15-25364250-7	chr15	25363743	25364743	+	879.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027395, exon 2 of 2)	exon (NM_027395, exon 2 of 2)	49521.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81289474-4	chr10	81288939	81289939	+	879.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282095, intron 1 of 20)	intron (NM_001282095, intron 1 of 20)	1828.0	NM_013769	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52965223-3	chr2	52964724	52965724	+	879.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	107356.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75486550-5	chr10	75486007	75487007	+	879.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	30874.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64076696-2	chr15	64076196	64077196	+	879.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-16248.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99956598-4	chr12	99956098	99957098	+	879.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7901.0	NM_001164426	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28831530-2	chr7	28831030	28832030	+	879.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_016772, intron 8 of 9)	intron (NM_016772, intron 8 of 9)	-2264.0	NM_010706	16855.0	Mm.210336	NM_010706	ENSMUSG00000053964	Lgals4	gal-4	lectin, galactose binding, soluble 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131116104-4	chr1	131115621	131116621	+	879.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18278.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37127155-4	chr19	37126590	37127590	+	879.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290829, intron 3 of 9)	B1_Mur1|SINE|Alu	-46753.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107637385-2	chr11	107636885	107637885	+	879.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105897)	promoter-TSS (NR_105897)	-337.0	NR_105897	102465562.0		NR_105897	ENSMUSG00000098497	Mir6932	Gm27691|mmu-mir-6932	microRNA 6932	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31296686-4	chr17	31296203	31297203	+	879.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001242427, exon 1 of 20)	5' UTR (NM_001242427, exon 1 of 20)	479.0	NM_001242427	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118692185-2	chr9	118691685	118692685	+	879.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 14 of 27)	intron (NM_133721, intron 14 of 27)	-19507.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	7.5	1.0	3.5	0.5	1.0	0.5
Merged-chr9-46121265-2	chr9	46120765	46121765	+	879.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	-107365.0	NM_009692	11806.0	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145616685-2	chr6	145616185	145617185	+	879.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009449, intron 1 of 4)	intron (NM_009449, intron 1 of 4)	722.0	NM_009449	22147.0	Mm.270295	NM_009449	ENSMUSG00000067338	Tuba3b	M[a]7|Tuba7	tubulin, alpha 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127637103-4	chr7	127636612	127637612	+	879.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21840.0	NR_155451	320683.0	Mm.156718	NM_177226	ENSMUSG00000045639	Zfp629	9330199A09Rik|Znf629	zinc finger protein 629	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102100285-4	chr7	102099764	102100764	+	879.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291354)	promoter-TSS (NM_001291354)	-35.0	NM_007491	11875.0	Mm.2816	NM_007491	ENSMUSG00000070424	Art5	ARTC5|Yac-2	ADP-ribosyltransferase 5	protein-coding	10.0	6.0	1.5	0.0	1.0	9.5
Merged-chr11-9379365-3	chr11	9378872	9379872	+	879.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 31 of 61)	intron (NM_178259, intron 31 of 61)	187430.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	2.5	0.0	1.0	0.0	1.0	1.0
Merged-chr11-78467756-3	chr11	78467256	78468256	+	879.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026740, intron 2 of 4)	intron (NM_026740, intron 2 of 4)	2055.0	NM_026740	52466.0	Mm.131618	NM_026740	ENSMUSG00000020829	Slc46a1	1110002C08Rik|D11Ertd18e|HCP1|Pcft	solute carrier family 46, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44401959-4	chr11	44401470	44402470	+	879.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303244, intron 1 of 7)	intron (NM_001303244, intron 1 of 7)	1907.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-35701212-2	chr5	35700712	35701712	+	879.2000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359895, intron 14 of 17)	intron (NM_001359895, intron 14 of 17)	-21432.0	NM_030127	78558.0	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46893257-4	chr17	46892753	46893753	+	879.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178385)	TTS (NM_178385)	2632.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140615863-4	chr5	140615370	140616370	+	879.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008494)	TTS (NM_008494)	8529.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-150596856-2	chr5	150596356	150597356	+	879.181824	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2331.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27418211-4	chr2	27417667	27418667	+	879.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	9441.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122445442-2	chr8	122444942	122445942	+	879.1666869999999	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045696, exon 1 of 1)	non-coding (NR_045696, exon 1 of 1)	1786.0	NR_045696	100689703.0	Mm.271989	NR_045696		9330133O14Rik	-	RIKEN cDNA 9330133O14 gene	ncRNA	0.5	1.0	0.0	1.0	0.0	0.5
Merged-chr10-19012838-5	chr10	19012427	19013427	+	879.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166402)	promoter-TSS (NM_001166402)	-964.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	32.5	71.0	20.5	28.0	90.0	27.5
Merged-chr18-54981214-2	chr18	54980714	54981714	+	879.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	8966.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139386466-2	chr5	139385966	139386966	+	879.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	-3438.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120354644-2	chr11	120354144	120355144	+	879.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	5966.0	NR_038126	66838.0	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118987396-2	chr14	118986868	118987868	+	879.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081252, intron 38 of 38)	B2_Mm1t|SINE|B2	49436.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	0.5	1.5	1.0	0.0	0.0	1.0
Merged-chr12-85487050-4	chr12	85486653	85487653	+	879.131226	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13263.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114897609-4	chr5	114897071	114898071	+	879.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011854, exon 1 of 6)	5' UTR (NM_011854, exon 1 of 6)	637.0	NM_001359181	23962.0	Mm.228363	NM_011854	ENSMUSG00000029561	Oasl2	M1204|Mmu-OASL|Oasl	2'-5' oligoadenylate synthetase-like 2	protein-coding	19.5	91.5	27.0	14.0	49.5	24.0
Merged-chr2-132575418-3	chr2	132574919	132575919	+	879.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355651, intron 1 of 19)	RSINE1|SINE|B4	2829.0	NM_001291050	74182.0	Mm.211211	NM_027096	ENSMUSG00000027346	Gpcpd1	2310004G06Rik|2310032D16Rik|AU015213|Gde5|Prei4|mKIAA1434	glycerophosphocholine phosphodiesterase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-4341631-3	chr10	4341133	4342133	+	879.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031185, intron 2 of 3)	intron (NM_031185, intron 2 of 3)	45842.0	NM_001359811	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	8.5	5.5	5.5	2.0	5.5	1.0
Merged-chr19-6976244-4	chr19	6975754	6976754	+	879.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008889, intron 1 of 3)	intron (NM_008889, intron 1 of 3)	1206.0	NM_008889	18938.0	Mm.140	NM_008889	ENSMUSG00000056612	Ppp1r14b	AOM172|PHI-1|PLCB3N|Png	protein phosphatase 1, regulatory (inhibitor) subunit 14B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4086514-4	chr19	4086007	4087007	+	879.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001160253, exon 5 of 6)	exon (NM_001160253, exon 5 of 6)	2988.0	NM_013878	29866.0	Mm.46268	NM_013878	ENSMUSG00000024857	Cabp2	-	calcium binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83562440-3	chr11	83561918	83562918	+	879.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16218.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3526505-4	chr2	3526001	3527001	+	879.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177647)	TTS (NM_177647)	13436.0	NM_177647	227526.0	Mm.211455	NM_177647	ENSMUSG00000039496	Cdnf	9330140G23|Armetl1	cerebral dopamine neurotrophic factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84202800-4	chr12	84202300	84203300	+	879.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	Tigger16a|DNA|TcMar-Tigger	-8785.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-83512409-4	chr4	83511880	83512880	+	879.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-13165.0	NM_001355549	320226.0	Mm.180032	NM_029117	ENSMUSG00000052407	Ccdc171	4930418J05Rik|4930473A06Rik|A330015D16Rik	coiled-coil domain containing 171	protein-coding	2.0	5.0	0.0	8.0	7.5	0.0
Merged-chr2-91280154-3	chr2	91279637	91280637	+	879.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175123, intron 7 of 8)	intron (NM_175123, intron 7 of 8)	15022.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	0.0	8.5	2.0	0.0	11.0	2.0
Merged-chr4-59546903-4	chr4	59546414	59547414	+	879.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144904, intron 1 of 14)	intron (NM_144904, intron 1 of 14)	2450.0	NM_178164	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-50631972-4	chr2	50631454	50632454	+	879.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3c|LINE|L1	276929.0	NR_154590	102634280.0		NR_154590		Gm48908	-	predicted gene 48908	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-49422260-4	chr17	49421767	49422767	+	879.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21B|LTR|ERV1	-6097.0	NM_028464	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137705457-2	chr5	137704957	137705957	+	879.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-20704.0	NM_001303266	231801.0	Mm.260869	NM_145566	ENSMUSG00000029722	Agfg2	A630095P14Rik|Hrbl|RAB-R|RABR	ArfGAP with FG repeats 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79783199-2	chr10	79782699	79783699	+	879.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_031380)	TTS (NM_031380)	5786.0	NM_001042710	73106.0	Mm.491308	NM_001042710	ENSMUSG00000020323	Prss57	2900092M14Rik|GLGL782|NSP4|Prssl1|UNQ782	protease, serine 57	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101698180-2	chr13	101697680	101698680	+	879.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 7 of 15)	MER91A|DNA|hAT-Tip100	-5550.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139232246-3	chr4	139231743	139232743	+	879.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	38132.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	25.5	101.5	45.0	39.0	78.5	52.5
Merged-chr5-66092290-2	chr5	66091790	66092790	+	879.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	ID_B1|SINE|B4	5889.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	1.5	0.0	10.0	2.0	6.0	7.5
Merged-chr18-68156775-2	chr18	68156275	68157275	+	879.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-71171.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-75542139-3	chr9	75541638	75542638	+	879.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357828, intron 1 of 10)	intron (NM_001357828, intron 1 of 10)	17519.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	9.0	2.5	3.5	0.0	0.0	2.0
Merged-chr8-69090335-3	chr8	69089841	69090841	+	879.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007509, intron 1 of 13)	intron (NM_007509, intron 1 of 13)	-1119.0	NM_153054	110877.0	Mm.19301	NM_153054	ENSMUSG00000036330	Slc18a1	4832416I10Rik|Vat1|Vmat1	solute carrier family 18 (vesicular monoamine), member 1	protein-coding	19.5	31.5	28.0	16.5	39.5	17.5
Merged-chr16-4907289-2	chr16	4906789	4907789	+	879.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 1 of 17)	intron (NM_001357062, intron 1 of 17)	21189.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96934904-3	chr10	96934414	96935414	+	879.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-100854.0	NR_045358	75301.0	Mm.108650	NR_045358	ENSMUSG00000111924	4930556N09Rik	-	RIKEN cDNA 4930556N09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139265816-2	chr4	139265330	139266330	+	879.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 4 of 9)	intron (NM_001037761, intron 4 of 9)	44878.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	5.0	1.0	4.5	2.5	9.0	8.5
Merged-chr17-6005309-2	chr17	6004809	6005809	+	879.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357667, intron 5 of 24)	intron (NM_001357667, intron 5 of 24)	-2271.0	NM_001290698	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104343341-2	chr8	104342841	104343841	+	879.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024217, intron 1 of 4)	intron (NM_024217, intron 1 of 4)	2747.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-47109964-2	chr4	47109464	47110464	+	879.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172693, intron 3 of 9)	intron (NM_172693, intron 3 of 9)	18011.0	NM_172693	230145.0	Mm.132246	NM_172693	ENSMUSG00000039774	Galnt12	9130206E10|A630062B03Rik	polypeptide N-acetylgalactosaminyltransferase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71707955-3	chr8	71707463	71708463	+	879.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028715)	TTS (NM_028715)	-6163.0	NM_028189	72297.0	Mm.290837	NM_028189	ENSMUSG00000031803	B3gnt3	2210008L19Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding	0.0	1.5	1.0	5.5	0.5	1.0
Merged-chr5-61613121-1	chr5	61612621	61613621	+	879.0	f1_balb.idr	Intergenic	RMER13B|LTR|ERVK	-195722.0	NM_019468	14380.0	Mm.347430	NM_019468	ENSMUSG00000089992	G6pd2	G6pdx-ps1|Gpd-2|Gpd2	glucose-6-phosphate dehydrogenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	2.5
Merged-chr6-13672899-4	chr6	13672417	13673417	+	879.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175312, intron 1 of 4)	B2_Mm2|SINE|B2	5049.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	0.0	0.0	2.0	0.0	0.0	8.0
Merged-chr16-21570379-3	chr16	21569857	21570857	+	879.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 41 of 46)	intron (NM_001081366, intron 41 of 46)	124308.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45935287-4	chr7	45934833	45935833	+	879.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033243, intron 2 of 12)	intron (NM_001033243, intron 2 of 12)	6935.0	NM_001033243	211535.0	Mm.227539	NM_001033243	ENSMUSG00000040189	Ccdc114	-	coiled-coil domain containing 114	protein-coding	0.5	0.0	2.0	5.5	1.0	1.0
Merged-chr11-108098647-3	chr11	108098162	108099162	+	879.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 3 of 16)	L1MB8|LINE|L1	101814.0	NR_106082	102465705.0		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	10.0	7.0	4.5	0.0	0.0	2.0
Merged-chr8-10902659-3	chr8	10902159	10903159	+	879.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_102285)	TTS (NR_102285)	2737.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-72963597-1	chr1	72963097	72964097	+	879.0	f0_balb.idr	Intergenic	Intergenic	52302.0	NM_009407	21958.0	Mm.425024	NM_009407	ENSMUSG00000026182	Tnp1	Stp-1|TP1|Tp-1	transition protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118422568-2	chr14	118422068	118423068	+	879.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56690.0	NR_045624	73306.0	Mm.362328	NR_045624	ENSMUSG00000099911	1700044C05Rik	-	RIKEN cDNA 1700044C05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57707431-3	chr6	57706927	57707927	+	879.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133737, intron 1 of 8)	MLT1F1|LTR|ERVL-MaLR	4972.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9684125-2	chr3	9683625	9684625	+	879.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-74040.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71148439-2	chr6	71147939	71148939	+	879.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4059.0	NM_178413	232078.0	Mm.37547	NM_178413	ENSMUSG00000054474	Thnsl2	BC051244|TSH2	threonine synthase-like 2 (bacterial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101155257-4	chr15	101154771	101155771	+	879.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-18801.0	NM_007395	11479.0	Mm.308467	NM_007395	ENSMUSG00000000532	Acvr1b	6820432J04|ALK-4|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding	0.0	4.5	0.5	0.0	2.5	3.5
Merged-chr12-51822473-2	chr12	51821973	51822973	+	879.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144788, intron 2 of 42)	B2_Mm2|SINE|B2	7063.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	0.0	6.0	2.5	0.0	2.0	1.0
Merged-chr8-126510081-2	chr8	126509581	126510581	+	879.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35016.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125274405-2	chr5	125273913	125274913	+	879.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	66681.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128768344-4	chr4	128767854	128768854	+	879.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001009819, exon 5 of 5)	3' UTR (NM_001009819, exon 5 of 5)	9096.0	NM_001009819	215493.0	Mm.300900	NM_001009819	ENSMUSG00000028794	A3galt2	Gm433|iGb3|iGb3S	alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase)	protein-coding	0.0	2.5	0.0	0.0	0.0	0.5
Merged-chr7-119890627-2	chr7	119890127	119891127	+	879.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163703, intron 1 of 2)	intron (NM_001163703, intron 1 of 2)	4831.0	NM_173408	233805.0	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-15158806-2	chr3	15158306	15159306	+	879.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	173496.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36053692-3	chr1	36053301	36054301	+	879.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-14599.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36763896-3	chr15	36763396	36764396	+	879.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	27036.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-48537245-2	chr6	48536759	48537759	+	879.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347164)	promoter-TSS (NM_001347164)	215.0	NR_130985	69432.0		NR_130985	ENSMUSG00000097716	1700026J14Rik	-	RIKEN cDNA 1700026J14 gene	ncRNA	7.0	10.0	14.5	40.0	79.0	33.5
Merged-chr4-134677015-3	chr4	134676537	134677537	+	879.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 1 of 11)	intron (NM_207237, intron 1 of 11)	27253.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82906713-2	chr15	82906213	82907213	+	879.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045068)	TTS (NR_045068)	5421.0	NM_013836	21411.0	Mm.252156	NM_013836	ENSMUSG00000041852	Tcf20	2810438H08Rik|SPBP|mKIAA0292	transcription factor 20	protein-coding	0.0	0.0	1.0	1.5	0.0	0.5
Merged-chr13-23560844-2	chr13	23560321	23561321	+	879.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1544.0	NM_178205	319151.0	Mm.261658	NM_178205	ENSMUSG00000069273	Hist1h3e	H3-f|H3.1	histone cluster 1, H3e	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77624935-3	chr15	77624464	77625464	+	879.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18322.0	NM_001143686	328563.0	Mm.17957	NM_001143686	ENSMUSG00000091694	Apol11b	A330102K04Rik	apolipoprotein L 11b	protein-coding	3.5	2.0	0.0	2.0	2.0	0.0
Merged-chr8-108693470-2	chr8	108692970	108693970	+	879.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21174.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87537542-2	chr6	87537042	87538042	+	879.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-4283.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	8.5	0.5	4.0	4.5	16.0	7.0
Merged-chr1-80639184-4	chr1	80638664	80639664	+	879.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 2 of 55)	MTEa|LTR|ERVL-MaLR	26188.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120734992-2	chr8	120734492	120735492	+	879.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1366.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120666766-3	chr2	120666264	120667264	+	879.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57169.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	0.0	0.0	3.5	0.0	5.5	0.0
Merged-chr19-55588953-2	chr19	55588453	55589453	+	879.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	113251.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139687859-3	chr5	139687373	139688373	+	879.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48460.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr5-66075959-2	chr5	66075459	66076459	+	879.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	MIRb|SINE|MIR	22220.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	31.0	55.5	62.5	18.5	30.0	35.0
Merged-chr14-76909725-3	chr14	76909245	76910245	+	879.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	126872.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	10.5	0.0	2.5	1.0	1.5	2.0
Merged-chr2-27512588-2	chr2	27512088	27513088	+	879.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13C1|LTR|ERVK	-2559.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66848251-2	chr15	66847751	66848751	+	879.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 46 of 47)	intron (NM_009375, intron 46 of 47)	-16422.0	NM_009192	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151583691-4	chr1	151583210	151584210	+	878.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	12337.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-75727597-4	chr12	75727097	75728097	+	878.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030750, intron 1 of 2)	intron (NM_030750, intron 1 of 2)	8132.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6680136-7	chr11	6679720	6680720	+	878.9761960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-19984.0	NR_028586	100041311.0	Mm.388018	NR_028586	ENSMUSG00000086373	Gm11978	-	predicted gene 11978	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-56771531-3	chr16	56771022	56772022	+	878.9722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172825, intron 4 of 15)	intron (NM_172825, intron 4 of 15)	24336.0	NM_172825	239853.0	Mm.258979	NM_172825	ENSMUSG00000022755	Adgrg7	9130020O16Rik|Gpr128	adhesion G protein-coupled receptor G7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60982808-4	chr18	60982440	60983440	+	878.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177407, intron 16 of 17)	intron (NM_177407, intron 16 of 17)	19386.0	NM_001286809	12322.0	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	4.0	2.5	3.0	2.5	0.0	1.0
Merged-chr14-13579142-7	chr14	13578684	13579684	+	878.9523929999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163032, intron 3 of 4)	intron (NM_001163032, intron 3 of 4)	-91692.0	NM_177624	218739.0	Mm.39919	NM_177624	ENSMUSG00000044772	Sntn	A430083B19Rik	sentan, cilia apical structure protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101077763-4	chr15	101077221	101078221	+	878.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23322.0	NM_001214911	668225.0	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	8.5	6.0	4.5	3.5	11.5	4.5
Merged-chr2-58167859-4	chr2	58167364	58168364	+	878.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045895, intron 2 of 3)	intron (NR_045895, intron 2 of 3)	3890.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-178078432-3	chr2	178077933	178078933	+	878.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162922)	promoter-TSS (NM_001162922)	-8.0	NM_001162922	353208.0	Mm.381194	NM_001162922	ENSMUSG00000078861	Zfp931	2810021G02Rik	zinc finger protein 931	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-115687100-3	chr3	115686625	115687625	+	878.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27930.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	4.5	12.0	8.5	2.5	8.5	5.5
Merged-chr8-35565299-3	chr8	35564808	35565808	+	878.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	-22490.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	8.5	34.0	29.0	37.5	42.5	39.5
Merged-chr11-98777455-4	chr11	98776948	98777948	+	878.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2071.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27233854-4	chr3	27233323	27234323	+	878.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 3 of 4)	intron (NM_178772, intron 3 of 4)	50819.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113669817-7	chr6	113669324	113670324	+	878.9285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172161, intron 3 of 12)	intron (NM_172161, intron 3 of 12)	-27226.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56726521-8	chr19	56726062	56727062	+	878.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4190.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-45699515-3	chr11	45699021	45700021	+	878.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-108562.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0.0	3.5	3.0	2.5	4.5	6.0
Merged-chr5-77463776-3	chr5	77463274	77464274	+	878.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1714.0	NR_131050	69370.0	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21158986-4	chr13	21158486	21159486	+	878.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15931.0	NM_146534	258527.0	Mm.271440	NM_146534	ENSMUSG00000045474	Olfr1368	MOR256-15	olfactory receptor 1368	protein-coding	6.0	0.0	0.5	0.0	0.0	2.0
Merged-chr2-19048405-4	chr2	19047910	19048910	+	878.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50091.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158348143-4	chr2	158347646	158348646	+	878.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13363.0	NR_015463	68108.0	Mm.119198	NR_015463		Snhg17	9430008C03Rik	small nucleolar RNA host gene 17	ncRNA	0.0	6.5	0.0	0.0	6.5	0.0
Merged-chr9-109039192-4	chr9	109038685	109039685	+	878.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025858, intron 1 of 5)	intron (NM_025858, intron 1 of 5)	618.0	NM_025858	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-125270417-4	chr10	125269926	125270926	+	878.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 3 of 5)	intron (NM_001358496, intron 3 of 5)	38390.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75727807-4	chr15	75727307	75728307	+	878.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20115.0	NM_194350	378435.0	Mm.309589	NM_194350	ENSMUSG00000047591	Mafa	RIPE3b1	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5503552-2	chr11	5503073	5504073	+	878.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-17068.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	9.5	32.5	16.5	10.0	25.5	9.0
Merged-chr12-75595565-5	chr12	75595105	75596105	+	878.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012024, intron 1 of 13)	CpG	595.0	NM_012024	26932.0	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-7111587-3	chr1	7111037	7112037	+	878.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183028, intron 1 of 5)	intron (NM_183028, intron 1 of 5)	22617.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128718522-4	chr2	128718037	128719037	+	878.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	19622.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	4.5	47.0	25.5	27.0	21.5	23.5
Merged-chr3-79789095-4	chr3	79788603	79789603	+	878.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51152.0	NM_212452	381489.0	Mm.331086	NM_212452	ENSMUSG00000034009	Rxfp1	Gm1018|Lgr7	relaxin/insulin-like family peptide receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80180027-4	chr7	80179589	80180589	+	878.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6752.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	26.5	112.5	55.0	1.5	25.0	19.5
Merged-chr2-30067256-4	chr2	30066767	30067767	+	878.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204875, intron 1 of 7)	CpG	793.0	NM_001204875	56086.0	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49192619-7	chr13	49192124	49193124	+	878.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013610, intron 1 of 3)	intron (NM_013610, intron 1 of 3)	5077.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21509165-2	chr9	21508665	21509665	+	878.833374	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_136912, exon 2 of 3)	non-coding (NR_136912, exon 2 of 3)	729.0	NM_001324510	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136053047-2	chr4	136052547	136053547	+	878.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025919, intron 1 of 5)	CpG	324.0	NM_025919	67025.0	Mm.276856	NM_025919	ENSMUSG00000059291	Rpl11	2010203J19Rik	ribosomal protein L11	protein-coding	29.5	72.0	37.5	40.5	42.5	27.5
Merged-chr13-110471750-4	chr13	110471248	110472248	+	878.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76704.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	3.5	6.0	0.0	3.0	0.0	1.0
Merged-chr6-122576464-3	chr6	122575957	122576957	+	878.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22648.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20708539-3	chr14	20708008	20709008	+	878.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027996, intron 1 of 25)	intron (NM_027996, intron 1 of 25)	956.0	NM_001252082	268721.0	Mm.275082	NM_027996	ENSMUSG00000021819	Zswim8	2310021P13Rik|4832404P21Rik|Kiaa0913|mKIAA0913	zinc finger SWIM-type containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156010220-3	chr1	156009721	156010721	+	878.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144791, intron 6 of 6)	MTB|LTR|ERVL-MaLR	24596.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	35.5	43.5	38.5	12.0	27.0	17.0
Merged-chr10-56879937-3	chr10	56879461	56880461	+	878.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	447980.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110672661-3	chr9	110672155	110673155	+	878.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	16152.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	0.0	0.5	1.0	0.0	2.0	1.0
Merged-chr15-25985605-4	chr15	25985100	25986100	+	878.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144523, intron 1 of 5)	B1_Mus1|SINE|Alu	1234.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-41461855-3	chr9	41461345	41462345	+	878.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131928, intron 3 of 4)	intron (NR_131928, intron 3 of 4)	-13048.0	NR_131931	73144.0	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	4.0	15.0	2.5	1.5	8.5	2.0
Merged-chr16-90995474-6	chr16	90994973	90995973	+	878.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045515, intron 2 of 32)	intron (NM_001045515, intron 2 of 32)	15622.0	NM_001045515	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76548394-3	chr12	76547929	76548929	+	878.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046044)	promoter-TSS (NR_046044)	-504.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53088456-3	chr18	53087962	53088962	+	878.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87830.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21711686-4	chr5	21711191	21712191	+	878.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10069.0	NM_001359965	242864.0	Mm.153292	NM_178728	ENSMUSG00000044968	Napepld	A530089G06|Mbldc1|NAPE-PLD	N-acyl phosphatidylethanolamine phospholipase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57259960-4	chr16	57259473	57260473	+	878.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28507.0	NM_001358433	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	4.5	8.5	1.5	1.5	2.5	3.0
Merged-chr12-108938433-2	chr12	108937933	108938933	+	878.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	44161.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4513416-4	chr7	4512890	4513890	+	878.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360154, intron 4 of 12)	intron (NM_001360154, intron 4 of 12)	2585.0	NM_001277903	21955.0	Mm.358643	NM_011618	ENSMUSG00000064179	Tnnt1	AW146156|Tnt|sTnT|ssTnT	troponin T1, skeletal, slow	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127331734-2	chr3	127331237	127332237	+	878.75	f0_c57.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	MTC|LTR|ERVL-MaLR	77321.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	8.0	36.0	7.5	2.5	0.5	5.5
Merged-chr13-101842096-4	chr13	101841554	101842554	+	878.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73837.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37826991-8	chr13	37826419	37827419	+	878.745544	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033615)	promoter-TSS (NR_033615)	7.0	NR_033615	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82954506-4	chr11	82954028	82955028	+	878.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183201, intron 1 of 5)	MER89|LTR|ERV1	2426.0	NM_183201	327978.0	Mm.42147	NM_183201	ENSMUSG00000054404	Slfn5	AI956840	schlafen 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99105659-4	chr15	99105223	99106223	+	878.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6239.0	NM_176835	72778.0	Mm.30544	NM_176835	ENSMUSG00000038009	Dnajc22	2810451A06Rik|AI506245	DnaJ heat shock protein family (Hsp40) member C22	protein-coding	0.0	0.0	0.0	0.5	2.0	0.5
Merged-chr11-44538901-4	chr11	44538303	44539303	+	878.723816	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 3 of 5)	C-rich|Low_complexity|Low_complexity	19426.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	0.5	7.0	5.5	0.0	1.0	2.5
Merged-chr6-145709993-4	chr6	145709442	145710442	+	878.7222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93979.0	NM_009449	22147.0	Mm.270295	NM_009449	ENSMUSG00000067338	Tuba3b	M[a]7|Tuba7	tubulin, alpha 3B	protein-coding	0.0	4.0	1.5	2.0	4.0	4.0
Merged-chr9-86592243-3	chr9	86591756	86592756	+	878.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008615, intron 12 of 13)	intron (NM_008615, intron 12 of 13)	20203.0	NM_027100	69519.0	Mm.272517	NM_027100	ENSMUSG00000032417	Rwdd2a	1700030C20Rik|AI848608|Rwdd2	RWD domain containing 2A	protein-coding	8.0	2.0	6.5	4.5	3.0	5.5
Merged-chr17-28515980-3	chr17	28515449	28516449	+	878.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14912.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54227822-7	chr14	54227337	54228337	+	878.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26092.0	NM_001113358	13135.0	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.0	4.5	0.5	5.5	2.5	4.5
Merged-chr13-108013291-4	chr13	108012785	108013785	+	878.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31189.0	NM_001048250	75616.0	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11820023-4	chr19	11819516	11820516	+	878.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152220)	promoter-TSS (NM_152220)	-613.0	NR_153434	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	33.5	72.5	40.5	20.5	41.0	29.0
Merged-chr7-16950318-4	chr7	16949840	16950840	+	878.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5658.0	NM_001099636	434128.0	Mm.483018	NM_001099636	ENSMUSG00000070802	Pnmal2	EG434128	PNMA-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120749606-4	chr11	120749116	120750116	+	878.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17595.0	NM_007621	12409.0	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121370209-4	chr10	121369675	121370675	+	878.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 1 of 13)	intron (NM_029364, intron 1 of 13)	5085.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	3.5	2.5	5.0	12.0	10.0	1.0
Merged-chr14-70077940-3	chr14	70077474	70078474	+	878.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289927, intron 1 of 1)	CpG	179.0	NM_001289927	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79060131-3	chr11	79059648	79060648	+	878.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348207)	promoter-TSS (NM_001348207)	-312.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160267520-3	chr2	160267026	160268026	+	878.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	59968.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23337487-4	chr16	23336997	23337997	+	878.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 5 of 7)	intron (NM_001252505, intron 5 of 7)	47027.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-50058319-3	chr5	50057830	50058830	+	878.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133911, intron 1 of 18)	CpG	666.0	NM_133911	70693.0	Mm.272974	NM_133911	ENSMUSG00000029090	Adgra3	3830613O22Rik|AU044632|Gpr125|Tem5-like	adhesion G protein-coupled receptor A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-68252105-3	chr18	68251612	68252612	+	878.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357444, intron 3 of 3)	intron (NM_001357444, intron 3 of 3)	8861.0	NR_106078	102465702.0		NR_106078	ENSMUSG00000098253	Mir7219	Gm27613|mmu-mir-7219	microRNA 7219	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-124014367-1	chr9	124013867	124014867	+	878.6666869999999	f0_balb.idr	Intergenic	Intergenic	-7604.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-137941872-3	chr3	137941371	137942371	+	878.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 4 of 8)	intron (NM_011932, intron 4 of 8)	23316.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	6.0	24.5	6.5	11.5	9.0	2.5
Merged-chr5-118468243-3	chr5	118467753	118468753	+	878.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92466.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54393399-3	chr14	54392890	54393890	+	878.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	16082.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	8.0	20.0	52.0	38.5	53.5	92.5
Merged-chr13-55178770-3	chr13	55178262	55179262	+	878.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25944.0	NM_008011	14186.0	Mm.276715	NM_008011	ENSMUSG00000005320	Fgfr4	Fgfr-4	fibroblast growth factor receptor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21780440-5	chr13	21779898	21780898	+	878.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020034, exon 1 of 1)	exon (NM_020034, exon 1 of 1)	227.0	NM_020034	56702.0	Mm.221314	NM_020034	ENSMUSG00000058773	Hist1h1b	H1.5|H1B|H1f5|H1s-3	histone cluster 1, H1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28432556-4	chr7	28432042	28433042	+	878.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175021, intron 1 of 12)	intron (NM_175021, intron 1 of 12)	3649.0	NM_175021	233033.0	Mm.54120	NM_175021	ENSMUSG00000109336	Samd4b	BC042901	sterile alpha motif domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32693117-3	chr12	32692606	32693606	+	878.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127229.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-67012629-3	chr14	67012086	67013086	+	878.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3709.0	NM_009761	12177.0	Mm.29820	NM_009761	ENSMUSG00000022051	Bnip3l	C86132|D14Ertd719e|Nip3L|Nix	BCL2/adenovirus E1B interacting protein 3-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34689220-2	chr6	34688720	34689720	+	878.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 3 of 13)	intron (NM_001347100, intron 3 of 13)	-20224.0	NM_145575	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-99028915-4	chr6	99028396	99029396	+	878.6375119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001197322)	promoter-TSS (NM_001197322)	-598.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-21516480-4	chr17	21515967	21516967	+	878.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19072.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	8.5	5.5	4.0	8.0	6.0	6.0
Merged-chr16-62785804-3	chr16	62785313	62786313	+	878.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178925, exon 2 of 6)	exon (NM_178925, exon 2 of 6)	903.0	NM_178925	106338.0	Mm.26321	NM_178925	ENSMUSG00000050312	Nsun3	6720484A09Rik|AU022521	NOL1/NOP2/Sun domain family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33979587-4	chr17	33979069	33980069	+	878.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_004446)	promoter-TSS (NR_004446)	-778.0	NR_004446	630499.0	Mm.440940	NM_001081015		H2-K2	EG630499|Gm7035|H-2K1|H-2K1K|H-2K2|H2-K1	histocompatibility 2, K region locus 2	pseudo	200.5	424.5	275.0	60.5	200.0	107.0
Merged-chr7-3715455-4	chr7	3714961	3715961	+	878.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357394, intron 9 of 14)	intron (NM_001357394, intron 9 of 14)	4921.0	NM_001357394	18733.0	Mm.326531	NM_011095	ENSMUSG00000058818	Pirb	Gp91|LIR-3|Lilrb3|PIR-B	paired Ig-like receptor B	protein-coding	17.5	48.0	65.5	15.0	72.5	18.5
Merged-chr4-139289071-5	chr4	139288619	139289619	+	878.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 9 of 9)	intron (NM_001037761, intron 9 of 9)	21589.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93014629-4	chr1	93014136	93015136	+	878.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001110315)	TTS (NM_001110315)	8302.0	NM_177587	208760.0	Mm.235537	NM_177587	ENSMUSG00000045091	Aqp12	AB084104|mAQP12	aquaporin 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93471597-4	chr10	93471013	93472013	+	878.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008517, intron 10 of 18)	intron (NM_008517, intron 10 of 18)	-17255.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	11.0	12.5	10.5	5.0	5.5	5.0
Merged-chr3-104961907-6	chr3	104961677	104962677	+	878.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009520)	promoter-TSS (NM_009520)	-468.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33969132-3	chr17	33968631	33969631	+	878.5833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	9660.0	NR_004446	630499.0	Mm.440940	NM_001081015		H2-K2	EG630499|Gm7035|H-2K1|H-2K1K|H-2K2|H2-K1	histocompatibility 2, K region locus 2	pseudo	52.5	22.5	5.5	12.5	17.5	9.0
Merged-chr2-173300933-3	chr2	173300433	173301433	+	878.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24400.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-9718228-4	chr10	9717725	9718725	+	878.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33503.0	NR_038036	620417.0	Mm.378085	NR_038036	ENSMUSG00000111901	Gm6150	-	predicted gene 6150	ncRNA	0.0	15.0	6.0	14.5	6.5	5.5
Merged-chr17-84187198-4	chr17	84186702	84187702	+	878.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001806, intron 1 of 1)	CpG	745.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-28685604-3	chr19	28685079	28686079	+	878.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045330, intron 1 of 4)	intron (NR_045330, intron 1 of 4)	-5502.0	NM_175459	226075.0	Mm.223508	NM_175459	ENSMUSG00000052942	Glis3	4833409N03Rik|E330013K21Rik	GLIS family zinc finger 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-115762815-3	chr3	115762299	115763299	+	878.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47744.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	38.5	48.5	58.5	26.0	43.5	35.0
Merged-chr1-75245010-4	chr1	75244485	75245485	+	878.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001159885, exon 9 of 9)	3' UTR (NM_001159885, exon 9 of 9)	8283.0	NM_001159885	56812.0	Mm.489660	NM_020266	ENSMUSG00000026203	Dnajb2	2700059H22Rik|Dnajb10|Hsj1|mDj8	DnaJ heat shock protein family (Hsp40) member B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-34847492-4	chr12	34846990	34847990	+	878.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 2 of 27)	intron (NM_001271386, intron 2 of 27)	69605.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	11.5	1.0	14.5	8.0	18.5	13.0
Merged-chr4-137372344-2	chr4	137371843	137372843	+	878.541626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-14584.0	NM_001243769	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	4.0	11.0	9.5	2.5	2.5	7.0
Merged-chr9-124275208-4	chr9	124274698	124275698	+	878.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37496.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	0.0	6.5	3.0	0.0	0.0	0.0
Merged-chr10-122575621-3	chr10	122575118	122576118	+	878.522217	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5727.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	20.0	92.5	47.5	21.5	52.5	52.0
Merged-chr15-102193036-2	chr15	102192536	102193536	+	878.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359128, intron 3 of 15)	intron (NM_001359128, intron 3 of 15)	-3993.0	NM_144942	246277.0	Mm.296382	NM_144942	ENSMUSG00000023044	Csad	Csd	cysteine sulfinic acid decarboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113070330-2	chr12	113069830	113070830	+	878.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081170, intron 22 of 23)	intron (NM_001081170, intron 22 of 23)	-4172.0	NM_001361919	75671.0	Mm.23377	NM_029381	ENSMUSG00000012211	Tex22	1700028O09Rik|AV210422|Tep22	testis expressed gene 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118846482-2	chr9	118845982	118846982	+	878.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 8 of 13)	intron (NM_001113514, intron 8 of 13)	-80054.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39253966-3	chr18	39253472	39254472	+	878.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 17 of 21)	intron (NM_001361073, intron 17 of 21)	233273.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	8.0	0.5	0.0	0.0	0.5
Merged-chr8-117385577-2	chr8	117385077	117386077	+	878.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 3 of 20)	intron (NM_028941, intron 3 of 20)	36407.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31015126-2	chr17	31014626	31015626	+	878.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42568.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180117303-3	chr2	180116804	180117804	+	878.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2062.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	0.5	0.0	4.0	5.5	1.0	2.0
Merged-chr13-49202456-2	chr13	49201956	49202956	+	878.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026738)	TTS (NM_026738)	13570.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-33419649-2	chr4	33419149	33420149	+	878.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305273, intron 13 of 15)	L1MA6|LINE|L1	-18432.0	NR_106198	102465904.0		NR_106198	ENSMUSG00000098310	Mir8118	Gm27954|mmu-mir-8118	microRNA 8118	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41868159-4	chr10	41867638	41868638	+	878.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162908, intron 1 of 9)	Lx9|LINE|L1	-19301.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87634981-4	chr16	87634520	87635520	+	878.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-63934.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	14.5	64.0	36.0	16.0	45.5	27.0
Merged-chr11-101065629-2	chr11	101065129	101066129	+	878.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-4465.0	NM_013792	27419.0	Mm.95452	NM_013792	ENSMUSG00000001751	Naglu	-	alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr7-16174953-2	chr7	16174453	16175453	+	878.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302472)	promoter-TSS (NM_001302472)	-442.0	NM_001277988	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	2.0	3.0	2.5	1.5	1.0	1.5
Merged-chr15-6432846-2	chr15	6432346	6433346	+	878.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 10 of 13)	intron (NM_001008702, intron 10 of 13)	-12487.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36243782-2	chr1	36243282	36244282	+	878.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198899, intron 1 of 40)	intron (NM_198899, intron 1 of 40)	520.0	NM_198899	320011.0	Mm.261022	NM_198899	ENSMUSG00000037470	Uggt1	0910001L17Rik|A930007H10Rik|AA589501|AI414429|AI448372|C820010P03Rik|GT|UGT1|Ugcgl1	UDP-glucose glycoprotein glucosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-147320980-2	chr3	147320480	147321480	+	878.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	468613.0	NM_001302957	70892.0	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25861101-2	chr14	25860601	25861601	+	878.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013469, intron 1 of 14)	intron (NM_013469, intron 1 of 14)	18946.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109649377-2	chr11	109648877	109649877	+	878.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313974)	promoter-TSS (NM_001313974)	-28.0	NM_001313973	19084.0	Mm.30039	NM_021880	ENSMUSG00000020612	Prkar1a	1300018C22Rik|RIalpha|Tse-1|Tse1	protein kinase, cAMP dependent regulatory, type I, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4092838-2	chr19	4092338	4093338	+	878.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-4513.0	NM_026373	52004.0	Mm.29609	NM_026373	ENSMUSG00000024856	Cdk2ap2	5830466O21Rik|D19Ertd144e|Doc-1r	CDK2-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-8333921-2	chr9	8333421	8334421	+	878.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	87135.0	NR_035437	100316772.0		NR_035437	ENSMUSG00000084747	Mir1899	Mirn1899|mmu-mir-1899	microRNA 1899	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47510579-2	chr17	47510079	47511079	+	878.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	B1F1|SINE|Alu	5528.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	11.5	72.5	35.5	1.0	28.0	15.0
Merged-chr9-50553142-2	chr9	50552642	50553642	+	878.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133217, intron 1 of 11)	intron (NM_133217, intron 1 of 11)	520.0	NM_001359610	170752.0	Mm.390149	NM_133217	ENSMUSG00000032066	Bco2	B-diox-II|Bcdo2|Bcmo2|CMO2	beta-carotene oxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35211725-7	chr2	35211222	35212222	+	878.496582	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-10602.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79809359-4	chr3	79808831	79809831	+	878.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33331.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	5.5	13.5	2.5	1.5	5.0	2.0
Merged-chr17-45734121-4	chr17	45733645	45734645	+	878.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028164)	promoter-TSS (NM_028164)	-301.0	NM_028164	72240.0	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding	3.0	0.5	0.0	2.0	1.0	0.5
Merged-chr13-55600828-4	chr13	55600328	55601328	+	878.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146045, intron 1 of 5)	intron (NM_146045, intron 1 of 5)	932.0	NM_001311137	218271.0	Mm.139825	NM_146045	ENSMUSG00000021504	B4galt7	-	xylosylprotein beta1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I)	protein-coding	11.0	19.0	17.0	10.5	19.0	17.5
Merged-chr16-90738347-4	chr16	90737888	90738888	+	878.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029844)	promoter-TSS (NM_029844)	64.0	NM_029844	77037.0	Mm.22455	NM_029844	ENSMUSG00000039956	Mrap	1110025G12Rik|C21ORF61|Falp|ORF61	melanocortin 2 receptor accessory protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-189654527-3	chr1	189654007	189655007	+	878.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081363, exon 13 of 18)	exon (NM_001081363, exon 13 of 18)	33579.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-132103588-3	chr3	132103102	132104102	+	878.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020265, intron 1 of 3)	intron (NM_020265, intron 1 of 3)	18310.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5522171-3	chr17	5521669	5522669	+	878.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	GA-rich|Low_complexity|Low_complexity	29569.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54180018-4	chr6	54179505	54180505	+	878.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 2 of 12)	intron (NM_001163640, intron 2 of 12)	-84853.0	NM_001311133	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119335079-4	chr9	119334593	119335593	+	878.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010851)	TTS (NM_010851)	4947.0	NM_010851	17874.0	Mm.213003	NM_010851	ENSMUSG00000032508	Myd88	-	myeloid differentiation primary response gene 88	protein-coding	22.0	34.0	26.0	33.0	35.5	24.5
Merged-chr6-86524173-4	chr6	86523706	86524706	+	878.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011865)	TTS (NM_011865)	1983.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150282190-4	chr4	150281656	150282656	+	878.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 1 of 22)	intron (NM_001085492, intron 1 of 22)	240.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123989853-4	chr9	123989349	123990349	+	878.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11441.0	NM_007718	12770.0	Mm.423532	NM_007718	ENSMUSG00000064039	Ccr1l1	Cmkbr1l1	chemokine (C-C motif) receptor 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44561207-4	chr7	44560698	44561698	+	878.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7233.0	NM_001285517	22260.0	Mm.968	NM_009473	ENSMUSG00000060601	Nr1h2	AI194859|LXR|LXRB|LXRBSV|LXRbeta|NER1|OR-1|RIP15|UR|Unr|Unr2	nuclear receptor subfamily 1, group H, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5922902-4	chr13	5922389	5923389	+	878.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61400.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144237522-4	chr2	144237059	144238059	+	878.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	28643.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127597965-2	chr10	127597504	127598504	+	878.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	23144.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	29.5	52.5	93.0	51.0	124.5	103.5
Merged-chr14-78924824-3	chr14	78924308	78925308	+	878.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027906, intron 4 of 44)	intron (NM_027906, intron 4 of 44)	75630.0	NM_173758	219189.0	Mm.159651	NM_027906	ENSMUSG00000058997	Vwa8	1300010F03Rik|4932416F07Rik|AI957255|Kiaa0564|mKIAA0564	von Willebrand factor A domain containing 8	protein-coding	0.0	3.5	1.0	3.0	0.0	4.0
Merged-chr9-45093968-3	chr9	45093469	45094469	+	878.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005421, intron 6 of 10)	(TG)n|Simple_repeat|Simple_repeat	14786.0	NM_001005421	270152.0	Mm.190461	NM_001005421	ENSMUSG00000048534	Jaml	AMICA|Amica1|Crea7|Gm638	junction adhesion molecule like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32730260-1	chr5	32729760	32730760	+	878.3333130000001	f1_balb.idr	Intergenic	Intergenic	16082.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr7-34229570-4	chr7	34229104	34230104	+	878.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008155, intron 1 of 17)	intron (NM_008155, intron 1 of 17)	732.0	NM_008155	14751.0	Mm.589	NM_008155	ENSMUSG00000036427	Gpi1	Amf|Gpi|Gpi-1|Gpi-1r|Gpi-1s|Gpi-1t|Gpi1-r|Gpi1-s|Gpi1-t|Gpi1s|MF|NK|NK/GPI|Nlk|Org|Pgi|Phi	glucose phosphate isomerase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-6636699-3	chr13	6636183	6637183	+	878.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019703, intron 1 of 21)	intron (NM_019703, intron 1 of 21)	12088.0	NM_019703	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13157343-4	chr8	13156842	13157842	+	878.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-1819.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-29290833-3	chr13	29290323	29291323	+	878.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131896, intron 15 of 16)	intron (NR_131896, intron 15 of 16)	274568.0	NR_045075	77920.0	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87652671-3	chr16	87652168	87653168	+	878.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-46286.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	14.0	48.0	24.5	10.5	22.5	27.0
Merged-chr10-66813049-3	chr10	66812551	66813551	+	878.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	107333.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132932207-4	chr7	132931721	132932721	+	878.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207302, intron 1 of 9)	intron (NM_207302, intron 1 of 9)	1079.0	NM_001362198	360216.0	Mm.389984	NM_207302	ENSMUSG00000030967	Zranb1	9330160G10Rik|D7Wsu87e|Gm1956|Trabid	zinc finger, RAN-binding domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24946665-3	chr16	24946124	24947124	+	878.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-113015.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152533959-4	chr1	152533475	152534475	+	878.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 12 of 17)	intron (NM_016846, intron 12 of 17)	91242.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-14381580-4	chr9	14381143	14382143	+	878.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028013)	promoter-TSS (NM_028013)	-401.0	NM_028013	71946.0	Mm.41423	NM_028013	ENSMUSG00000037419	Endod1	2210414F18Rik|2310067E08Rik|C85344	endonuclease domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41383986-4	chr19	41383466	41384466	+	878.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 1 of 16)	intron (NM_031376, intron 1 of 16)	1104.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	150.5	440.0	322.0	173.5	509.5	325.5
Merged-chr18-75473425-4	chr18	75472937	75473937	+	878.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 9 of 11)	L1MB2|LINE|L1	-41208.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	24.5	38.5	40.0	39.0	64.5	53.5
Merged-chr4-3875156-4	chr4	3874614	3875614	+	878.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3009.0	NM_020021	17451.0	Mm.459300	NM_020021	ENSMUSG00000078365	Mos	c-mos	Moloney sarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-140159791-4	chr4	140159293	140160293	+	878.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198610, intron 1 of 9)	ORR1E|LTR|ERVL-MaLR	16920.0	NR_153821	102636673.0	Mm.449180	NR_153821		Gm13029	Gm33676	predicted gene 13029	ncRNA	13.5	20.0	42.5	6.5	5.0	3.0
Merged-chr15-66536618-4	chr15	66536107	66537107	+	878.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172514, intron 7 of 9)	L1MC3|LINE|L1	24439.0	NM_172514	213068.0	Mm.132299	NM_172514	ENSMUSG00000036944	Tmem71	AI661017|E430024D12	transmembrane protein 71	protein-coding	3.5	0.0	1.0	6.5	1.5	7.0
Merged-chr3-129643332-4	chr3	129642771	129643771	+	878.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81815.0	NM_001310737	13645.0	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	0.0	0.5	0.0	6.0	7.0	18.0
Merged-chr12-35054607-4	chr12	35054099	35055099	+	878.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	7410.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	55.0	118.5	157.5	103.0	122.0	132.5
Merged-chr4-141535446-4	chr4	141534941	141535941	+	878.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347235, intron 1 of 14)	intron (NM_001347235, intron 1 of 14)	3156.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	20.5	3.0	8.0	4.5	18.5	11.0
Merged-chr4-137871119-3	chr4	137870626	137871626	+	878.2777710000001	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_199307, intron 1 of 19)	L2|LINE|L2	8889.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	1.5	25.5	19.0	30.0	59.0	41.5
Merged-chr11-87422581-4	chr11	87422074	87423074	+	878.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031386, intron 1 of 30)	intron (NM_031386, intron 1 of 30)	-5017.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37146348-4	chr19	37145807	37146807	+	878.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198300, intron 2 of 10)	B1F1|SINE|Alu	-27536.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-81439476-4	chr6	81438984	81439984	+	878.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	456179.0	NR_106091	102465711.0		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA	10.0	8.0	4.5	6.5	0.0	3.0
Merged-chr18-56759332-4	chr18	56758825	56759825	+	878.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51512.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59808631-2	chr15	59808131	59809131	+	878.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-13672.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	100.5	170.5	136.0	80.5	140.0	129.0
Merged-chr2-19716029-4	chr2	19715512	19716512	+	878.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57950.0	NM_027715	71198.0	Mm.83981	NM_027715	ENSMUSG00000043415	Otud1	4933428L19Rik	OTU domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103215319-4	chr15	103214811	103215811	+	878.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110216)	promoter-TSS (NM_001110216)	41.0	NM_007626	12419.0	Mm.262059	NM_007626	ENSMUSG00000009575	Cbx5	2610029O15Rik|C75991|HP1|Hp1a|Hp1alpha	chromobox 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83918554-2	chr17	83918054	83919054	+	878.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64136.0	NR_155491	320021.0	Mm.379475	NR_155490		C430042M11Rik	-	RIKEN cDNA C430042M11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127659789-2	chr10	127659161	127660161	+	878.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_009284, exon 21 of 22)	exon (NM_009284, exon 21 of 22)	7042.0	NM_001122895	17937.0	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	4.0	20.5	1.0	0.0	6.0	2.0
Merged-chr6-123175539-6	chr6	123175077	123176077	+	878.2222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004159, intron 2 of 5)	intron (NM_001004159, intron 2 of 5)	2554.0	NM_001004159	381809.0	Mm.333372	NM_001004159	ENSMUSG00000067767	Clec4b2	Aplra1|F830043G12Rik|mDCAR1	C-type lectin domain family 4, member b2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-82973409-3	chr9	82972917	82973917	+	878.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081216, intron 4 of 39)	intron (NM_001081216, intron 4 of 39)	2072.0	NM_001081216	83946.0	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	0.0	8.5	3.5	0.0	3.5	3.5
Merged-chr4-122840425-3	chr4	122839931	122840931	+	878.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008917, intron 1 of 8)	L1MB5|LINE|L1	4204.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	4.5	2.0	1.0	8.5	7.5	3.0
Merged-chr5-90862120-4	chr5	90861619	90862619	+	878.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29126.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-41185545-4	chr9	41185056	41186056	+	878.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20599.0	NR_040392	78500.0	Mm.275715	NR_040392	ENSMUSG00000100837	1700063D05Rik	-	RIKEN cDNA 1700063D05 gene	ncRNA	50.0	102.5	83.5	12.5	18.5	12.5
Merged-chr11-95841531-4	chr11	95841074	95842074	+	878.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284393)	promoter-TSS (NM_001284393)	-721.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	10.5	25.0	17.5	9.0	25.5	17.5
Merged-chr16-22264825-4	chr16	22264340	22265340	+	878.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330555, intron 1 of 9)	intron (NM_001330555, intron 1 of 9)	1165.0	NM_001330554	20462.0	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127633248-5	chr10	127632631	127633631	+	878.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9855.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141573640-7	chr4	141573096	141574096	+	878.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26328.0	NM_001163256	74202.0	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	3.0	30.5	6.0	3.5	10.0	21.0
Merged-chr6-134794340-4	chr6	134793842	134794842	+	878.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151454, intron 1 of 1)	intron (NR_151454, intron 1 of 1)	-1308.0	NR_151455	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	4.0	2.5	8.5	3.5	2.0	3.5
Merged-chr15-83518319-4	chr15	83517813	83518813	+	878.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357953, intron 1 of 11)	intron (NM_001357953, intron 1 of 11)	161.0	NM_001357953	319953.0	Mm.235007	NM_178869	ENSMUSG00000022442	Ttll1	6330444E16Rik|AV014541	tubulin tyrosine ligase-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3462224-4	chr5	3461729	3462729	+	878.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 4 of 7)	intron (NM_009873, intron 4 of 7)	-81604.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17294621-3	chr10	17294115	17295115	+	878.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-198833.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57688181-3	chr10	57687682	57688682	+	878.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039050, intron 2 of 4)	intron (NM_001039050, intron 2 of 4)	37201.0	NM_001190402	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134509178-4	chr5	134508678	134509678	+	878.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009990, intron 8 of 16)	MIR3|SINE|MIR	43256.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128734384-3	chr4	128733889	128734889	+	878.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195083, intron 1 of 6)	intron (NM_001195083, intron 1 of 6)	6818.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	26.0	71.5	27.0	29.5	78.5	50.0
Merged-chr6-29825464-4	chr6	29824951	29825951	+	878.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	ORR1F|LTR|ERVL-MaLR	-28290.0	NM_001347084	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-128613968-2	chr1	128613482	128614482	+	878.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21683.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	17.5	14.0	6.0	22.5	14.5	14.0
Merged-chr10-80271361-2	chr10	80270861	80271861	+	878.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133188, intron 1 of 11)	intron (NM_133188, intron 1 of 11)	6370.0	NM_133188	70248.0	Mm.148693	NM_133188	ENSMUSG00000069565	Dazap1	2410042M16Rik|mPrrp	DAZ associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102759492-6	chr4	102758923	102759923	+	878.133301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285852)	promoter-TSS (NM_001285852)	-712.0	NM_001285860	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	5.0	27.5	6.5	5.0	17.5	4.0
Merged-chr17-29773525-4	chr17	29773023	29774023	+	878.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56506.0	NM_001163741	68597.0	Mm.390979	NM_026782	ENSMUSG00000024018	Ccdc167	1110021J02Rik	coiled-coil domain containing 167	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170170391-4	chr2	170169891	170170891	+	878.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27716.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-74665073-4	chr7	74664571	74665571	+	878.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110291.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122258160-3	chr7	122257672	122258672	+	878.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30953.0	NM_001316672	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-125426522-3	chr1	125426014	125427014	+	878.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205386, intron 2 of 12)	URR1A|DNA|hAT-Charlie	9213.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126873410-3	chr8	126872874	126873874	+	878.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	24354.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16689572-4	chr1	16689032	16690032	+	878.104126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159711, intron 1 of 4)	B1F|SINE|Alu	1076.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	5.0	3.0	2.5	0.0	12.5	2.0
Merged-chr13-37954490-4	chr13	37953996	37954996	+	878.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39712.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-104233378-4	chr12	104232888	104233888	+	878.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009251, intron 3 of 6)	RMER16|LTR|ERVK	-2759.0	NM_001353612	20715.0	Mm.312628	NM_009251		Serpina3g	2A2|AI119734|Spi2-1|Spi2/eb.1|Spi2A|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3G	protein-coding	14.0	61.5	19.5	15.0	57.5	24.0
Merged-chr1-194978219-3	chr1	194977730	194978730	+	878.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1271.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101541297-4	chr7	101540778	101541778	+	878.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14524.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110738596-3	chr12	110738111	110739111	+	878.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347428, intron 1 of 2)	CpG	679.0	NM_001347428	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-68359676-4	chr15	68359156	68360156	+	878.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18367.0	NR_029718	387228.0		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	14.0	13.5	7.0	12.5	10.0	8.5
Merged-chr6-124724600-3	chr6	124724096	124725096	+	878.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077705, intron 11 of 15)	intron (NM_001077705, intron 11 of 15)	-6206.0	NR_029792	723944.0		NR_029792	ENSMUSG00000065462	Mir200c	Mirn200c|mir-200c	microRNA 200c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27354226-3	chr7	27353722	27354722	+	878.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138676, intron 6 of 17)	intron (NM_138676, intron 6 of 17)	1786.0	NM_138676	192192.0	Mm.21297	NM_138676	ENSMUSG00000089832	Shkbp1	B930062H15Rik|Sb1	Sh3kbp1 binding protein 1	protein-coding	5.5	4.0	0.0	3.5	0.0	0.0
Merged-chr17-36992901-3	chr17	36992401	36993401	+	878.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3397.0	NM_001115075	240095.0	Mm.246609	NM_001115075	ENSMUSG00000024459	H2-M5	CRW2|D130003B22Rik|H-2M5	histocompatibility 2, M region locus 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5630412-3	chr17	5629912	5630912	+	878.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	MLT1F2|LTR|ERVL-MaLR	137812.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-114794099-4	chr9	114793536	114794536	+	878.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027294, intron 2 of 3)	intron (NM_027294, intron 2 of 3)	-12043.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	82.5	193.0	152.0	51.5	88.5	100.5
Merged-chr7-126097708-4	chr7	126097201	126098201	+	878.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15290.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23572499-4	chr13	23571990	23572990	+	878.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178196)	TTS (NM_178196)	1090.0	NM_178196	319181.0	Mm.261673	NM_178196	ENSMUSG00000058385	Hist1h2bg	-	histone cluster 1, H2bg	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78402068-4	chr17	78401567	78402567	+	878.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360407, intron 4 of 9)	intron (NM_001360407, intron 4 of 9)	16085.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46936152-4	chr8	46935572	46936572	+	878.034058	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50815.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-53265156-3	chr1	53264633	53265633	+	878.015869	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153556, intron 4 of 12)	intron (NM_153556, intron 4 of 12)	31895.0	NM_153556	227099.0	Mm.60499	NM_153556	ENSMUSG00000026098	Pms1	-	PMS1 homolog 1, mismatch repair system component	protein-coding	0.0	0.0	0.0	7.0	7.5	2.0
Merged-chr2-3323907-2	chr2	3323407	3324407	+	878.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008708, intron 11 of 13)	Charlie1|DNA|hAT-Charlie	8721.0	NM_001013376	227522.0	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35047355-2	chr7	35046855	35047855	+	878.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009884, exon 2 of 2)	3' UTR (NM_009884, exon 2 of 2)	9211.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6295242-3	chr2	6294746	6295746	+	878.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 4 of 6)	intron (NR_040333, intron 4 of 6)	-27511.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	7.0	8.5	0.0	0.0	0.0	6.5
Merged-chr11-97534369-2	chr11	97533869	97534869	+	878.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 8 of 19)	intron (NM_018873, intron 8 of 19)	-34029.0	NM_001289118	100141474.0	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-28188162-3	chr15	28187652	28188652	+	878.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15614.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85499359-3	chr8	85498841	85499841	+	878.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173866, intron 2 of 11)	B3A|SINE|B2	6724.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	0.5	2.5	2.5	0.0	2.5	2.5
Merged-chr10-78397962-2	chr10	78397462	78398462	+	878.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10583.0	NR_105872	102465547.0		NR_105872	ENSMUSG00000098376	Mir6907	Gm27351|mmu-mir-6907	microRNA 6907	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56277595-3	chr17	56277132	56278132	+	878.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174989)	promoter-TSS (NM_174989)	-865.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103754852-2	chr2	103754352	103755352	+	878.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153126, intron 3 of 28)	intron (NM_153126, intron 3 of 28)	6418.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116107983-2	chr11	116107483	116108483	+	878.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172570, exon 3 of 6)	exon (NM_172570, exon 3 of 6)	2252.0	NM_001205081	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128321724-1	chr2	128321224	128322224	+	878.0	f1_c57bl6.idr	intron (NR_028590, intron 2 of 2)	intron (NR_028590, intron 2 of 2)	107627.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	1.0	2.5	2.0	1.0	0.0	0.0
Merged-chr18-82529420-2	chr18	82528920	82529920	+	878.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025245, intron 3 of 3)	intron (NM_001025245, intron 3 of 3)	-25043.0	NM_001025258	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81166170-2	chr10	81165670	81166670	+	878.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021501, intron 1 of 10)	intron (NM_021501, intron 1 of 10)	1550.0	NM_021501	59004.0	Mm.34428	NM_021501	ENSMUSG00000004934	Pias4	PIASY|Pias-gamma|Piasg	protein inhibitor of activated STAT 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90186296-6	chr16	90185749	90186749	+	878.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34493.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-185279365-3	chr1	185278872	185279872	+	878.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163754, intron 31 of 34)	intron (NM_001163754, intron 31 of 34)	-33947.0	NR_029580	387189.0		NR_029580	ENSMUSG00000065581	Mir194-1	Mirn194|Mirn194-1|miR-194|mir-194-1	microRNA 194-1	ncRNA	0.0	0.0	2.5	0.0	0.0	0.0
Merged-chr19-29641675-3	chr19	29641170	29642170	+	878.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362131, intron 2 of 14)	intron (NM_001362131, intron 2 of 14)	6745.0	NM_001081213	226090.0	Mm.267131	NM_001081213	ENSMUSG00000046324	Ermp1	D19Ertd410e|D19Wsu12e|Fxna|b2b2633Clo|mKIAA1815	endoplasmic reticulum metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8037984-3	chr15	8037496	8038496	+	878.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081402, intron 7 of 17)	intron (NM_001081402, intron 7 of 17)	61213.0	NM_001358788	545085.0	Mm.321312	NM_001081402	ENSMUSG00000039828	Wdr70	4833422F06Rik	WD repeat domain 70	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-19659134-3	chr2	19658644	19659644	+	878.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027715, exon 1 of 1)	exon (NM_027715, exon 1 of 1)	1082.0	NM_027715	71198.0	Mm.83981	NM_027715	ENSMUSG00000043415	Otud1	4933428L19Rik	OTU domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102795195-2	chr14	102794695	102795695	+	878.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	187437.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-90232757-2	chr11	90232257	90233257	+	878.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16719.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73434408-2	chr14	73433908	73434908	+	878.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49119.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-55148334-2	chr18	55147834	55148834	+	878.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-155743.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27242660-4	chr17	27242173	27243173	+	878.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131118, intron 1 of 2)	intron (NR_131118, intron 1 of 2)	5393.0	NR_131118	319720.0	Mm.394996	NR_131118		9630028I04Rik	-	RIKEN cDNA 9630028I04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154890276-3	chr2	154889783	154890783	+	878.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026030, intron 1 of 8)	intron (NM_026030, intron 1 of 8)	2623.0	NM_026030	67204.0	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	15.0	23.5	30.0	14.0	25.5	29.5
Merged-chr3-65531842-2	chr3	65531342	65532342	+	878.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178892, exon 2 of 6)	exon (NM_178892, exon 2 of 6)	-2428.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4634934-2	chr18	4634450	4635450	+	878.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001081963)	promoter-TSS (NM_001081963)	21.0	NM_001081963	240185.0	Mm.33179	NM_001081963	ENSMUSG00000033960	Jcad	1110056P05Rik|9430020K01Rik|Gm328|mKIAA1462	junctional cadherin 5 associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58073444-4	chr13	58072941	58073941	+	878.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195075, intron 5 of 16)	intron (NM_001195075, intron 5 of 16)	28987.0	NM_001195075	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45007887-2	chr19	45007387	45008387	+	878.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153796, exon 1 of 5)	exon (NM_153796, exon 1 of 5)	-1230.0	NM_001348259	226153.0	Mm.105585	NM_153796	ENSMUSG00000025209	Twnk	D19Ertd626e|PEO|Peo1|Twinl	twinkle mtDNA helicase	protein-coding	0.0	1.0	1.5	0.0	2.0	5.0
Merged-chr4-119707998-3	chr4	119707489	119708489	+	878.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49044.0	NM_008191	14916.0	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	0.0	1.5	0.0	0.0	1.5	0.0
Merged-chr10-12991041-2	chr10	12990541	12991541	+	878.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17409.0	NM_175102	66125.0	Mm.29743	NM_175102	ENSMUSG00000078348	Sf3b5	10kDa|1110005L13Rik|AU043053|Sf3b10	splicing factor 3b, subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-65968545-3	chr14	65968074	65969074	+	878.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013492)	promoter-TSS (NM_013492)	91.0	NM_013492	12759.0	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80523065-4	chr11	80522591	80523591	+	878.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177390, intron 21 of 21)	intron (NM_177390, intron 21 of 21)	-13985.0	NR_126552	77417.0	Mm.437510	NR_126552	ENSMUSG00000085078	C030013C21Rik	-	RIKEN cDNA C030013C21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80815609-4	chr12	80815079	80816079	+	878.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	25047.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31366538-3	chr16	31365982	31366982	+	878.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41192.0	NR_155301	102636590.0	Mm.45825	NR_155301		AV205837	-	expressed sequence AV205837	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143045011-2	chr7	143044501	143045501	+	878.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110355, intron 1 of 4)	B3|SINE|B2	-7749.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	56.5	64.5	71.0	34.0	76.0	71.0
Merged-chr5-135551121-3	chr5	135550624	135551624	+	878.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6002.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	5.0	26.0	11.0	18.0	46.0	19.0
Merged-chr9-90268308-2	chr9	90267808	90268808	+	878.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	2461.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85639285-2	chr12	85638785	85639785	+	878.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_030887, exon 4 of 4)	3' UTR (NM_030887, exon 4 of 4)	39267.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-64936226-3	chr18	64935692	64936692	+	878.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	48436.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.0	1.0	0.0	8.5	2.5	0.5
Merged-chr17-47511955-2	chr17	47511455	47512455	+	878.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	B1_Mur1|SINE|Alu	6904.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69067793-2	chr11	69067293	69068293	+	878.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-3016.0	NM_025838	66910.0	Mm.33964	NM_025838	ENSMUSG00000020895	Tmem107	1110004B13Rik|2810049P21Rik	transmembrane protein 107	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95993112-2	chr3	95992618	95993618	+	878.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023320, intron 2 of 5)	intron (NM_023320, intron 2 of 5)	2721.0	NM_023320	67220.0	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	13.5	7.0	36.5	6.0	14.5	11.5
Merged-chr3-27598796-2	chr3	27598296	27599296	+	878.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 4 of 26)	(T)n|Simple_repeat|Simple_repeat	-13801.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144699234-4	chr3	144698749	144699749	+	878.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019464, intron 5 of 8)	intron (NM_019464, intron 5 of 8)	21086.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-105328511-3	chr14	105328005	105329005	+	877.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69832.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	0.0	0.0	1.5	0.0	2.0	2.0
Merged-chr2-158161787-4	chr2	158161234	158162234	+	877.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15342.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119838103-4	chr13	119837582	119838582	+	877.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7865.0	NM_001001449	380878.0	Mm.327311	NM_001001449	ENSMUSG00000094237	AF067063	-	cDNA sequence AF067063	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103587522-4	chr3	103587019	103588019	+	877.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001276681, exon 3 of 8)	exon (NM_001276681, exon 3 of 8)	11393.0	NM_001276681	54524.0	Mm.88818	NM_018800	ENSMUSG00000027849	Syt6	3110037A08Rik|AW048930|sytVI	synaptotagmin VI	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60859307-4	chr18	60858813	60859813	+	877.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10349.0	NM_001198984	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	0.0	0.0	0.0	2.5	0.0	0.0
Merged-chr4-106805015-2	chr4	106804515	106805515	+	877.9166869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347159)	promoter-TSS (NM_001347159)	-8.0	NM_001347159	329910.0	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	8.0	0.0	1.5	4.0	0.0	1.0
Merged-chr5-115475862-3	chr5	115475386	115476386	+	877.9166869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8411.0	NM_001167691	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	5.0	2.0	2.0	0.5	5.5	1.0
Merged-chr16-91792826-2	chr16	91792326	91793326	+	877.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 4 of 15)	intron (NM_001110276, intron 4 of 15)	63455.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-71001568-2	chr12	71001068	71002068	+	877.900024	f1_balb.idr|f1_c57bl6.idr	intron (NR_045055, intron 3 of 3)	MTD|LTR|ERVL-MaLR	14255.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	13.0	29.5	16.5	6.5	18.5	15.0
Merged-chr17-79482167-3	chr17	79481706	79482706	+	877.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4321.0	NR_033463	74622.0	Mm.311921	NR_033463		4930429F11Rik	-	RIKEN cDNA 4930429F11 gene	ncRNA	0.0	2.0	11.5	0.0	2.0	4.0
Merged-chr18-77792255-3	chr18	77791754	77792754	+	877.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2296.0	NM_013831	19201.0	Mm.57174	NM_013831	ENSMUSG00000025429	Pstpip2	MAYP|cmo	proline-serine-threonine phosphatase-interacting protein 2	protein-coding	0.0	3.0	0.0	2.0	2.0	3.5
Merged-chr15-100422215-3	chr15	100421685	100422685	+	877.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008732, intron 1 of 16)	intron (NM_008732, intron 1 of 16)	870.0	NM_001146161	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	88.5	204.0	149.5	77.0	148.5	121.5
Merged-chr5-86920954-4	chr5	86920466	86921466	+	877.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152811, intron 3 of 5)	intron (NM_152811, intron 3 of 5)	5537.0	NM_152811	71773.0	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110840674-4	chr5	110840145	110841145	+	877.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153571)	promoter-TSS (NM_153571)	628.0	NM_016681	50883.0	Mm.279308	NM_016681	ENSMUSG00000029521	Chek2	CHK2|Cds1|HUCDS1|Rad53	checkpoint kinase 2	protein-coding	16.0	21.0	21.5	11.5	22.5	21.0
Merged-chr3-9608539-4	chr3	9608045	9609045	+	877.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133218, intron 1 of 8)	intron (NM_133218, intron 1 of 8)	1540.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0.0	0.0	10.0	0.0	0.0	0.0
Merged-chr19-29382995-4	chr19	29382495	29383495	+	877.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 5 of 6)	intron (NM_021893, intron 5 of 6)	15557.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55760315-4	chr14	55759824	55760824	+	877.8583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	-1104.0	NM_020490	57260.0	Mm.159670	NM_020490	ENSMUSG00000040432	Ltb4r2	5830462O07Rik|BLT2|LTB4-R 2|LTB4-R-2|LTB4-R2	leukotriene B4 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3912634-2	chr11	3912134	3913134	+	877.857178	f1_balb.idr|f1_c57bl6.idr	exon (NM_153142, exon 1 of 2)	exon (NM_153142, exon 1 of 2)	2030.0	NM_153142	103710.0	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-117848060-2	chr6	117847560	117848560	+	877.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6785.0	NM_001346652	232337.0	Mm.290847	NM_177684	ENSMUSG00000059689	Zfp637	AI646709|BC021601|Znf32	zinc finger protein 637	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127585221-2	chr10	127584721	127585721	+	877.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 15 of 88)	intron (NM_008512, intron 15 of 88)	35927.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0.0	4.0	3.5	0.0	3.5	8.0
Merged-chr17-84169529-4	chr17	84169042	84170042	+	877.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	18405.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5965422-3	chr19	5964944	5965944	+	877.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1238.0	NM_008893	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	1.5	1.5	0.0	1.5	1.5	0.0
Merged-chr4-129003941-3	chr4	129003440	129004440	+	877.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016895, intron 4 of 6)	intron (NM_016895, intron 4 of 6)	10716.0	NM_001033966	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-54952558-4	chr15	54952031	54953031	+	877.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155354)	promoter-TSS (NR_155354)	-417.0	NR_155354	102638507.0	Mm.364574	NR_155354		Gm26684	-	predicted gene, 26684	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81199265-3	chr7	81198749	81199749	+	877.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	-14555.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0.0	16.0	11.0	0.0	16.0	11.0
Merged-chr4-132476439-4	chr4	132475970	132476970	+	877.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-12549.0	NM_026039	67219.0	Mm.45929	NM_026039	ENSMUSG00000066042	Med18	2810046C01Rik	mediator complex subunit 18	protein-coding	6.0	3.0	6.0	6.0	3.0	6.0
Merged-chr8-88655501-4	chr8	88655002	88656002	+	877.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 2 of 12)	intron (NM_145857, intron 2 of 12)	8155.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	5.5	9.0	9.5	4.5	6.0	20.5
Merged-chr13-42101614-4	chr13	42101100	42102100	+	877.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	49579.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112058306-4	chr13	112057795	112058795	+	877.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	190359.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180172347-3	chr2	180171856	180172856	+	877.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019822, intron 2 of 9)	intron (NM_019822, intron 2 of 9)	768.0	NM_019822	56436.0	Mm.316654	NM_019822	ENSMUSG00000039041	Adrm1	1110063P18Rik|2510006J17Rik|AA408205|ARM-1|AU043535|Arm1|Gp110|Rpn13	adhesion regulating molecule 1	protein-coding	19.0	62.5	61.5	19.5	69.0	71.0
Merged-chr15-96736839-3	chr15	96736349	96737349	+	877.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-37121.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40963155-4	chr4	40962673	40963673	+	877.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029814, intron 7 of 7)	MTC|LTR|ERVL-MaLR	-7733.0	NM_001290449	74164.0	Mm.247456	NM_023739	ENSMUSG00000028423	Nfx1	1300017N15Rik|3000003M19Rik|NFX.1|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141549652-4	chr7	141549158	141550158	+	877.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9801.0	NM_001142681	68038.0	Mm.245355	NM_026522	ENSMUSG00000025512	Chid1	3110023E09Rik|AI841869	chitinase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4551490-6	chr2	4550928	4551928	+	877.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 11 of 23)	MTEa|LTR|ERVL-MaLR	-8326.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87998057-4	chr6	87997531	87998531	+	877.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16348.0	NR_026990	434064.0	Mm.371796	NR_026990	ENSMUSG00000084950	Gm5577	EG434064	predicted gene 5577	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148473209-4	chr5	148472719	148473719	+	877.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-73315.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96409543-2	chr3	96409091	96410091	+	877.791626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	5242.0	NR_001579	21748.0		NR_001579	ENSMUSG00000064796	Terc	mTER|mTR	telomerase RNA component	ncRNA	0.0	0.0	3.5	0.0	9.5	5.5
Merged-chr19-36926857-3	chr19	36926370	36927370	+	877.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080706, intron 1 of 37)	intron (NM_001080706, intron 1 of 37)	791.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	36.0	85.0	62.0	37.0	81.0	63.0
Merged-chr7-101863669-3	chr7	101863169	101864169	+	877.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252552, intron 4 of 6)	intron (NM_001252552, intron 4 of 6)	-6479.0	NM_001303239	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19065206-8	chr10	19064677	19065677	+	877.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49767.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	1.0	1.5	0.0	1.0	1.5	0.0
Merged-chr9-5825031-2	chr9	5824531	5825531	+	877.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	-343455.0	NM_001357398	71785.0	Mm.390122	NM_027924	ENSMUSG00000032006	Pdgfd	1110003I09Rik	platelet-derived growth factor, D polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-138140162-4	chr6	138139664	138140664	+	877.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019946)	promoter-TSS (NM_019946)	-363.0	NM_001361308	56615.0	Mm.14796	NM_019946	ENSMUSG00000008540	Mgst1	1500002K10Rik|Gst	microsomal glutathione S-transferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-101559668-4	chr14	101559239	101560239	+	877.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	Lx6|LINE|L1	49452.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80147885-2	chr11	80147385	80148385	+	877.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5732.0	NM_183275	68550.0	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113942788-2	chr5	113942237	113943237	+	877.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_198109, exon 15 of 15)	exon (NM_198109, exon 15 of 15)	-34031.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	2.0	3.0	0.0	9.0	3.0	0.0
Merged-chr17-36044952-4	chr17	36044467	36045467	+	877.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034909, intron 1 of 2)	MLT1F1|LTR|ERVL-MaLR	2006.0	NM_001034909	547347.0	Mm.484641	NM_001034909	ENSMUSG00000073407	Gm6034	EG547347|H2-gs14-2	predicted gene 6034	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6569939-4	chr15	6569427	6570427	+	877.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9920.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49321636-3	chr13	49321131	49322131	+	877.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12423.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128798420-4	chr6	128797921	128798921	+	877.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9780.0	NM_008527	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	3.5	8.0	6.5	0.0	10.5	5.0
Merged-chr15-62011928-4	chr15	62011434	62012434	+	877.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-26052.0	NR_132747	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25570841-4	chr17	25570348	25571348	+	877.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045176)	promoter-TSS (NR_045176)	37.0	NR_045176	72834.0	Mm.33042	NR_045176	ENSMUSG00000091475	2810468N07Rik	-	RIKEN cDNA 2810468N07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59665620-4	chr15	59665170	59666170	+	877.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17016.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65193359-3	chr9	65192856	65193856	+	877.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21334.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75702915-6	chr2	75702346	75703346	+	877.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132727, intron 1 of 1)	intron (NR_132727, intron 1 of 1)	1817.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	141.0	342.5	312.5	121.5	343.0	300.5
Merged-chr9-121476281-2	chr9	121475781	121476781	+	877.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19413.0	NM_001284508	12424.0	Mm.2619	NM_031161	ENSMUSG00000032532	Cck	-	cholecystokinin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88189731-3	chr6	88189225	88190225	+	877.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4166.0	NM_001355253	14461.0	Mm.491156	NM_008090	ENSMUSG00000015053	Gata2	Gata-2	GATA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28283405-3	chr17	28282901	28283901	+	877.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 2 of 7)	intron (NM_011145, intron 2 of 7)	-9779.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109394972-4	chr11	109394475	109395475	+	877.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010303, intron 3 of 3)	intron (NM_010303, intron 3 of 3)	-30971.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	3.0	3.5	3.5	0.0	11.5	8.0
Merged-chr8-11450882-3	chr8	11450402	11451402	+	877.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27027.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24112255-3	chr7	24111776	24112776	+	877.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021307)	promoter-TSS (NM_021307)	-44.0	NM_021307	57745.0	Mm.82678	NM_021307	ENSMUSG00000052675	Zfp112	Znf112|Znf228	zinc finger protein 112	protein-coding	0.0	2.0	0.5	0.0	0.5	0.5
Merged-chr7-25626115-2	chr7	25625615	25626615	+	877.6666869999999	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025504)	TTS (NM_025504)	-1509.0	NM_001036740	232984.0	Mm.192369	NM_146184	ENSMUSG00000059479	B3gnt8	B3galt7|B7galt7|BC025206	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-22304526-3	chr19	22304015	22305015	+	877.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035239, intron 1 of 24)	intron (NM_001035239, intron 1 of 24)	-143693.0	NM_177341	226025.0	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-53496427-3	chr6	53495908	53496908	+	877.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 5 of 10)	intron (NM_001327821, intron 5 of 10)	-76966.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-28513182-3	chr13	28512716	28513716	+	877.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045053, intron 7 of 8)	intron (NR_045053, intron 7 of 8)	197657.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19879969-2	chr7	19879469	19880469	+	877.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_177036, intron 5 of 6)	IMPB_01|Satellite|Satellite	7996.0	NM_177036	319930.0	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25030253-3	chr7	25029757	25030757	+	877.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360067, intron 12 of 19)	LTR50|LTR|ERVL	-24320.0	NM_001290469	232975.0	Mm.44101	NM_144921	ENSMUSG00000040907	Atp1a3	Atpa-2	ATPase, Na+/K+ transporting, alpha 3 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19477271-3	chr7	19476770	19477770	+	877.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18776.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	0.0	0.0	2.5	0.5	0.0	9.0
Merged-chr17-31117411-2	chr17	31116911	31117911	+	877.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009593, exon 15 of 15)	3' UTR (NM_009593, exon 15 of 15)	12200.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25411259-2	chr15	25410759	25411759	+	877.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	2505.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6519207-2	chr11	6518738	6519738	+	877.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_178440, intron 1 of 21)	intron (NM_178440, intron 1 of 21)	1720.0	NM_178440	246177.0	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	3.0	7.5	10.0	1.5	4.5	6.5
Merged-chr4-9658417-8	chr4	9657885	9658885	+	877.6478880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	10777.0	NM_023066	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	42.0	97.5	70.5	44.5	100.0	74.5
Merged-chr2-63510680-4	chr2	63510189	63511189	+	877.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64599.0	NR_152174	667257.0	Mm.417007	NR_152174		Gm8541	EG667257	predicted gene 8541	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-106760417-4	chr13	106759923	106760923	+	877.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	176535.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	0.0	2.0	0.0	0.0	0.0	0.0
Merged-chr1-157139502-3	chr1	157138968	157139968	+	877.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177644, exon 18 of 18)	3' UTR (NM_177644, exon 18 of 18)	-30788.0	NM_001305063	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	3.0	1.0	0.5	3.5	5.0	0.5
Merged-chr13-28958659-6	chr13	28958148	28959148	+	877.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4949.0	NM_009238	20677.0	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-41133635-5	chr8	41133060	41134060	+	877.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001005863, exon 1 of 14)	5' UTR (NM_001005863, exon 1 of 14)	166.0	NM_001005863	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	0.0	0.0	0.0	1.0	0.0	2.0
Merged-chr2-32715187-2	chr2	32714687	32715687	+	877.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2215.0	NR_039536	100628606.0		NR_039536	ENSMUSG00000105841	Mir3960	mmu-mir-3960	microRNA 3960	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3664349-2	chr7	3663872	3664872	+	877.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027203, intron 1 of 3)	intron (NM_027203, intron 1 of 3)	1468.0	NM_027203	69757.0	Mm.389782	NM_027203	ENSMUSG00000078813	Leng1	1500001K17Rik	leukocyte receptor cluster (LRC) member 1	protein-coding	6.0	3.5	0.5	0.5	0.0	4.5
Merged-chr13-43764380-2	chr13	43763880	43764880	+	877.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-20732.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	7.5	10.5	4.0	9.0	7.5	14.5
Merged-chr3-95654794-6	chr3	95654315	95655315	+	877.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-3906.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	13.0	56.5	21.5	13.5	39.0	17.5
Merged-chr8-34808210-6	chr8	34807693	34808693	+	877.569458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176933, intron 1 of 3)	CpG-13950	583.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	8.0	13.5	13.5	1.0	0.0	2.5
Merged-chr8-39338134-3	chr8	39337624	39338624	+	877.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_044988, intron 2 of 3)	L1_Mus3|LINE|L1	40144.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	0.0	1.5	0.0	6.0	6.0	5.0
Merged-chr19-46645830-3	chr19	46645241	46646241	+	877.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177813, intron 2 of 3)	intron (NM_001177813, intron 2 of 3)	22340.0	NM_001177813	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	0.5	2.5	3.5	0.5	2.5	2.0
Merged-chr15-68077556-3	chr15	68077047	68078047	+	877.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	181309.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100983675-3	chr11	100983158	100984158	+	877.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13041.0	NM_008986	19285.0	Mm.21864	NM_008986	ENSMUSG00000004044	Cavin1	2310075E07Rik|AW546441|Cav-p60|Cavin|Ptrf	caveolae associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127540382-5	chr10	127539910	127540910	+	877.546692	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 83 of 88)	intron (NM_008512, intron 83 of 88)	-5851.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	2.0	7.5	4.0	4.5	1.5	0.5
Merged-chr12-87386090-4	chr12	87385646	87386646	+	877.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011479, intron 1 of 11)	intron (NM_011479, intron 1 of 11)	2209.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-7873885-4	chr17	7873370	7874370	+	877.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52130.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78239657-4	chr15	78239112	78240112	+	877.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5199.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	0.0	6.5	1.0	0.0	6.5	1.0
Merged-chr7-68667867-4	chr7	68667362	68668362	+	877.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49406.0	NR_003648	384639.0	Mm.261760	NM_001013781		Gm5334	EG384639	tetraspanin 7 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170347468-4	chr2	170346994	170347994	+	877.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164369, exon 12 of 12)	3' UTR (NM_001164369, exon 12 of 12)	-8867.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr7-4062992-6	chr7	4062388	4063388	+	877.5238039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178611, intron 1 of 6)	intron (NM_178611, intron 1 of 6)	316.0	NM_001302677	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118106779-2	chr7	118106279	118107279	+	877.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_170669, exon 5 of 5)	3' UTR (NM_170669, exon 5 of 5)	9368.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	0.0	1.5	0.0	0.5	0.0	0.0
Merged-chr1-102458145-2	chr1	102457645	102458645	+	877.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	1302377.0	NR_037989	100504525.0	Mm.87065	NR_037989	ENSMUSG00000100684	Gm20268	-	predicted gene, 20268	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-29293376-2	chr5	29292876	29293876	+	877.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020295, intron 5 of 16)	intron (NM_020295, intron 5 of 16)	85014.0	NM_020295	56873.0	Mm.41572	NM_020295	ENSMUSG00000010721	Lmbr1	1110048D14Rik|AU017641	limb region 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90187027-2	chr16	90186527	90187527	+	877.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33715.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164856042-2	chr2	164855542	164856542	+	877.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011125, intron 3 of 15)	B3|SINE|B2	1666.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100321895-6	chr11	100321393	100322393	+	877.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011508, exon 4 of 4)	3' UTR (NM_011508, exon 4 of 4)	1944.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44399891-4	chr11	44399386	44400386	+	877.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303244)	promoter-TSS (NM_001303244)	-177.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83535932-3	chr8	83535423	83536423	+	877.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5170.0	NM_146270	258267.0	Mm.377401	NM_146270	ENSMUSG00000047286	Olfr370	MOR267-16|MOR26716	olfactory receptor 370	protein-coding	3.0	7.0	3.5	0.0	0.0	21.0
Merged-chr11-109433453-2	chr11	109432953	109433953	+	877.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252193, intron 5 of 7)	intron (NM_001252193, intron 5 of 7)	-6625.0	NR_040680	100503496.0	Mm.265874	NR_040680		Gm45916	-	predicted gene, 45916	ncRNA	9.5	9.0	3.5	4.5	6.0	0.0
Merged-chr6-92212200-2	chr6	92211700	92212700	+	877.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030081, intron 1 of 11)	intron (NM_030081, intron 1 of 11)	2611.0	NM_030081	78287.0	Mm.290734	NM_030081	ENSMUSG00000014550	Rbsn	5330426D11Rik|Zfyve20	rabenosyn, RAB effector	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71284737-2	chr17	71284237	71285237	+	877.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	26274.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	0.0	5.0	0.0	0.0	2.0	0.5
Merged-chr10-69870528-2	chr10	69870028	69871028	+	877.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_170729, intron 9 of 40)	intron (NM_170729, intron 9 of 40)	-55004.0	NM_170687	11735.0	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-44714622-3	chr18	44714132	44715132	+	877.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085373, intron 3 of 18)	intron (NM_001085373, intron 3 of 18)	-52366.0	NM_001085374	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	3.5	0.5	5.5	2.5	1.5	7.5
Merged-chr18-38962518-1	chr18	38962018	38963018	+	877.5	f0_balb.idr	intron (NM_001033789, intron 4 of 4)	intron (NM_001033789, intron 4 of 4)	-30627.0	NM_001361073	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	2.5	7.5	4.5	4.0	1.0	3.5
Merged-chr13-55369176-2	chr13	55368676	55369676	+	877.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016758)	promoter-TSS (NM_016758)	-556.0	NM_001360714	51791.0	Mm.1426	NM_016758	ENSMUSG00000052087	Rgs14	RPIP1	regulator of G-protein signaling 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-7868061-2	chr18	7867561	7868561	+	877.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282093)	promoter-TSS (NM_001282093)	-771.0	NM_001282093	225131.0	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	5.0	25.5	11.5	5.5	25.5	11.5
Merged-chr11-70844228-2	chr11	70843728	70844728	+	877.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291143)	promoter-TSS (NM_001291143)	-533.0	NM_001291143	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	6.0	33.0	14.0	1.0	6.0	15.0
Merged-chr19-12003732-2	chr19	12003232	12004232	+	877.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2C2|LTR|ERVL	33008.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5755685-2	chr19	5755185	5756185	+	877.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008520, intron 20 of 27)	intron (NM_008520, intron 20 of 27)	14781.0	NM_008520	16998.0	Mm.182396	NM_008520	ENSMUSG00000024940	Ltbp3	Ltbp2|mFLJ00070	latent transforming growth factor beta binding protein 3	protein-coding	1.0	0.0	1.5	0.0	3.0	0.0
Merged-chr18-38371231-2	chr18	38370731	38371731	+	877.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32238.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44125319-2	chr7	44124819	44125819	+	877.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45-int|LTR|ERVK	-11971.0	NM_008454	16615.0	Mm.440887	NM_008454	ENSMUSG00000038968	Klk1b16	Klk16|mGk-16	kallikrein 1-related peptidase b16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141407062-3	chr4	141406563	141407563	+	877.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019701, intron 16 of 19)	intron (NM_019701, intron 16 of 19)	-8357.0	NM_024412	12733.0	Mm.167900	NM_024412	ENSMUSG00000033770	Clcnka	C75963|CLC-K1|Clcnk1	chloride channel, voltage-sensitive Ka	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108258873-2	chr3	108258373	108259373	+	877.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011967, intron 1 of 8)	intron (NM_011967, intron 1 of 8)	1947.0	NM_011967	26442.0	Mm.208883	NM_011967	ENSMUSG00000068749	Psma5	ZETA	proteasome (prosome, macropain) subunit, alpha type 5	protein-coding	0.0	0.5	0.0	0.0	0.5	0.0
Merged-chr15-84959949-2	chr15	84959449	84960449	+	877.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033273, intron 2 of 9)	intron (NM_001033273, intron 2 of 9)	-8326.0	NR_037206	100526461.0		NR_037206	ENSMUSG00000080441	Mir1249	mir-1249|mmu-mir-1249	microRNA 1249	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46597518-3	chr8	46597015	46598015	+	877.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001184, intron 6 of 14)	RLTR25A|LTR|ERVK	19712.0	NM_001001184	408022.0	Mm.217385	NM_001001184	ENSMUSG00000038225	Primpol	BC065112|Ccdc111	primase and polymerase (DNA-directed)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11235677-4	chr4	11235171	11236171	+	877.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159595, intron 8 of 26)	intron (NM_001159595, intron 8 of 26)	18588.0	NM_178112	72656.0	Mm.246713	NM_178112	ENSMUSG00000040738	Ints8	2810013E07Rik|AV063769|D130008D20Rik	integrator complex subunit 8	protein-coding	4.5	9.5	14.5	4.5	23.0	13.0
Merged-chr14-14066220-2	chr14	14065720	14066720	+	877.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139227, intron 4 of 11)	L1_Mur3|LINE|L1	53729.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-49051089-3	chr9	49050588	49051588	+	877.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-4493.0	NM_012039	26951.0	Mm.24791	NM_012039	ENSMUSG00000032264	Zw10	6330566F14Rik|MmZw10	zw10 kinetochore protein	protein-coding	7.5	5.0	1.0	2.0	12.5	19.5
Merged-chr10-78185982-2	chr10	78185482	78186482	+	877.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029546)	promoter-TSS (NM_029546)	-833.0	NM_029546	110816.0	Mm.103522	NM_029546	ENSMUSG00000032834	Pwp2	6530411D08Rik|Pwp2h|wdp103	PWP2 periodic tryptophan protein homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61682551-3	chr9	61682048	61683048	+	877.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	231962.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92659574-4	chr1	92659079	92660079	+	877.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10738.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35035310-2	chr9	35034810	35035810	+	877.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026324, exon 16 of 16)	3' UTR (NM_026324, exon 16 of 16)	-81418.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103830881-4	chr3	103830387	103831387	+	877.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D2|LTR|ERVK	-1809.0	NM_001142959	229672.0	Mm.297245	NM_001142959	ENSMUSG00000044165	Bcl2l15	Bfk|Gm566	BCLl2-like 15	protein-coding	1.0	3.0	1.5	0.0	3.0	6.0
Merged-chr2-170118364-2	chr2	170117864	170118864	+	877.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033299, intron 2 of 5)	intron (NM_001033299, intron 2 of 5)	12856.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109703749-2	chr4	109703249	109704249	+	877.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007983, intron 1 of 18)	intron (NM_007983, intron 1 of 18)	27122.0	NM_007983	14084.0	Mm.318259	NM_007983	ENSMUSG00000010517	Faf1	AA408698|Dffrx|Fam	Fas-associated factor 1	protein-coding	0.0	1.5	0.0	0.0	0.0	4.0
Merged-chr15-99456576-4	chr15	99456084	99457084	+	877.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001884, intron 1 of 12)	intron (NM_001001884, intron 1 of 12)	1164.0	NM_001001884	380969.0	Mm.22915	NM_001001884	ENSMUSG00000023009	Nckap5l	C230021P08Rik|Cep169	NCK-associated protein 5-like	protein-coding	14.0	20.5	16.5	9.5	34.5	17.5
Merged-chr5-63821375-4	chr5	63820865	63821865	+	877.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	8870.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	0.0	2.5	1.5	3.5	0.0	0.0
Merged-chr9-95858526-4	chr9	95857998	95858998	+	877.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073361)	promoter-TSS (NR_073361)	-616.0	NM_001271569	73410.0	Mm.443314	NM_028533	ENSMUSG00000096655	1700065D16Rik	-	RIKEN cDNA 1700065D16 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25175392-4	chr9	25174881	25175881	+	877.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23600.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37969545-4	chr13	37969046	37970046	+	877.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24662.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	2.5	0.0	6.0	2.0	1.0	3.0
Merged-chr15-31367431-11	chr15	31366934	31367934	+	877.4560550000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026153, exon 1 of 2)	5' UTR (NM_026153, exon 1 of 2)	325.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20937206-3	chr11	20936721	20937721	+	877.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106113.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	0.0	0.0	0.0	0.5	4.0	3.5
Merged-chr1-136625520-5	chr1	136625036	136626036	+	877.4400019999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177643, exon 2 of 2)	exon (NM_177643, exon 2 of 2)	635.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31399551-4	chr14	31399099	31400099	+	877.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	RSINE1|SINE|B4	18078.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6452633-4	chr4	6452124	6453124	+	877.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 1 of 30)	intron (NM_010945, intron 1 of 30)	1647.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25406182-4	chr15	25405664	25406664	+	877.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	7600.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171060482-3	chr1	171059999	171060999	+	877.3999630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR9B|LTR|ERVK	-1096.0	NM_010188	14131.0	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	51.5	131.5	73.5	44.0	107.0	84.0
Merged-chr12-104103623-3	chr12	104103134	104104134	+	877.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172953, intron 3 of 4)	intron (NM_172953, intron 3 of 4)	2521.0	NM_172953	268591.0	Mm.73172	NM_172953	ENSMUSG00000041550	Serpina5	4933415L04|PAI-3|Pci	serine (or cysteine) peptidase inhibitor, clade A, member 5	protein-coding	0.0	0.0	0.5	5.5	8.5	1.0
Merged-chr11-85506490-4	chr11	85505998	85506998	+	877.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 15 of 25)	B1_Mur4|SINE|Alu	153334.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77497736-4	chr11	77497253	77498253	+	877.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004144, intron 1 of 19)	intron (NM_001004144, intron 1 of 19)	4341.0	NM_001004144	216963.0	Mm.290182	NM_001004144	ENSMUSG00000011877	Git1	Cat-1|p95Cat	G protein-coupled receptor kinase-interactor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-77341817-3	chr8	77341273	77342273	+	877.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 18 of 22)	intron (NM_030113, intron 18 of 22)	-175283.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73554601-4	chr2	73554098	73555098	+	877.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-25111.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101223297-4	chr4	101222799	101223799	+	877.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 1 of 24)	intron (NM_146145, intron 1 of 24)	41983.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59727172-2	chr15	59726672	59727672	+	877.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67787.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5108213-2	chr19	5107713	5108713	+	877.333374	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045528, exon 16 of 16)	non-coding (NR_045528, exon 16 of 16)	-1217.0	NM_029576	76308.0	Mm.182563	NM_029576	ENSMUSG00000024870	Rab1b	1110011F09Rik	RAB1B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-9600628-2	chr14	9600128	9601128	+	877.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 8 of 9)	intron (NM_001360141, intron 8 of 9)	-283467.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-123931159-2	chr6	123930659	123931659	+	877.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	-77969.0	NM_001104641	545874.0	Mm.347595	NM_001104641	ENSMUSG00000094672	Vmn2r25	EG545874	vomeronasal 2, receptor 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63439375-4	chr14	63438990	63439990	+	877.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177628, intron 1 of 3)	intron (NM_177628, intron 1 of 3)	3096.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53785598-3	chr15	53785096	53786096	+	877.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177225, intron 2 of 4)	intron (NM_177225, intron 2 of 4)	116840.0	NM_177225	320679.0	Mm.442455	NM_177225	ENSMUSG00000058656	Samd12	A830094I09Rik	sterile alpha motif domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-15267995-3	chr4	15267523	15268523	+	877.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181401, intron 1 of 2)	intron (NM_181401, intron 1 of 2)	2203.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99386746-3	chr5	99386247	99387247	+	877.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-133820.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-62654729-4	chr2	62654226	62655226	+	877.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8471.0	NM_001164477	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-46917939-4	chr7	46917474	46918474	+	877.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021884, intron 1 of 9)	L2a|LINE|L2	1995.0	NM_001348089	22088.0	Mm.241334	NM_021884	ENSMUSG00000014402	Tsg101	AI255943|CC2	tumor susceptibility gene 101	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82822473-3	chr18	82821981	82822981	+	877.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33416.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46315434-3	chr19	46314909	46315909	+	877.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028627, intron 12 of 17)	intron (NM_028627, intron 12 of 17)	9479.0	NM_001177370	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.0	3.5	0.0	0.0	0.0	0.0
Merged-chr5-115534483-4	chr5	115534051	115535051	+	877.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	B1_Mus2|SINE|Alu	-24916.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	26.0	41.5	24.0	23.0	47.0	28.0
Merged-chr9-89974785-3	chr9	89974288	89975288	+	877.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011245, exon 9 of 27)	exon (NM_011245, exon 9 of 27)	65013.0	NM_001357743	19417.0	Mm.44561	NM_011245	ENSMUSG00000032356	Rasgrf1	AI844718|CDC25|CDC25Mm|Gnrp|Grf1|Grfbeta|P190-A|Ras-GRF1|p190|p190RhoGEF	RAS protein-specific guanine nucleotide-releasing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126587973-4	chr8	126587447	126588447	+	877.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164598)	TTS (NM_001164598)	5489.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5753145-6	chr17	5752613	5753613	+	877.305542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_146073, exon 9 of 9)	3' UTR (NM_146073, exon 9 of 9)	-45544.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85715165-6	chr11	85714599	85715599	+	877.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045875, intron 1 of 5)	intron (NR_045875, intron 1 of 5)	4645.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140648057-5	chr5	140647516	140648516	+	877.2999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308040, intron 1 of 12)	intron (NM_001308040, intron 1 of 12)	1015.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95136538-4	chr3	95136027	95137027	+	877.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153121, intron 1 of 2)	intron (NM_153121, intron 1 of 2)	2439.0	NM_153121	217779.0	Mm.341945	NM_153121	ENSMUSG00000053769	Lysmd1	2610022K04Rik|AI415311	LysM, putative peptidoglycan-binding, domain containing 1	protein-coding	4.5	26.0	9.0	4.5	26.0	9.0
Merged-chr7-44051415-3	chr7	44050905	44051905	+	877.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020268)	promoter-TSS (NM_020268)	-885.0	NM_020268	16619.0	Mm.445911	NM_020268	ENSMUSG00000063177	Klk1b27	Gk27|Klk21l|Klk27|mGK-27	kallikrein 1-related peptidase b27	protein-coding	10.5	4.5	0.5	1.5	7.0	9.0
Merged-chr19-16209778-3	chr19	16209276	16210276	+	877.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	45678.0	NR_033228	595139.0	Mm.405662	NR_033228		E030024N20Rik	9030417F11Rik|Ppia-ps8	peptidylprolyl isomerase A pseudogene 8	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108005306-3	chr9	108004816	108005816	+	877.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013785, intron 1 of 5)	intron (NM_013785, intron 1 of 5)	2668.0	NM_013785	27399.0	Mm.276155	NM_013785	ENSMUSG00000032594	Ip6k1	1200016D08Rik|AU022776|Ihpk1|InsP6|InsP6k1|Itpk6	inositol hexaphosphate kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34749910-4	chr2	34749422	34750422	+	877.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151469, intron 2 of 26)	intron (NR_151469, intron 2 of 26)	5310.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117337843-2	chr8	117337343	117338343	+	877.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-11327.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135211065-4	chr3	135210573	135211573	+	877.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-1490.0	NM_173762	229841.0	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-19968009-4	chr11	19967505	19968505	+	877.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	43563.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117805781-2	chr10	117805295	117806295	+	877.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13090.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	1.0	2.0	4.0	1.0	1.0	2.0
Merged-chr2-128711017-4	chr2	128710510	128711510	+	877.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	12095.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	38.0	103.0	79.0	53.5	178.5	87.5
Merged-chr9-56079797-4	chr9	56079296	56080296	+	877.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10180.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4516367-4	chr8	4515893	4516893	+	877.241699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026058, intron 2 of 10)	intron (NM_026058, intron 2 of 10)	22988.0	NM_026058	67260.0	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74243019-4	chr1	74242507	74243507	+	877.2374880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 2 of 10)	ID_B1|SINE|B4	6490.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95716330-4	chr4	95715826	95716826	+	877.229126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029347, intron 6 of 10)	intron (NM_029347, intron 6 of 10)	136905.0	NM_029347	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	2.0	0.0	4.5	2.0	0.0	4.5
Merged-chr19-16371900-3	chr19	16371392	16372392	+	877.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 5 of 6)	MLTR11A|LTR|ERVK	-56888.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105704381-3	chr4	105703866	105704866	+	877.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-536847.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34256818-4	chr13	34256307	34257307	+	877.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	L1MB1|LINE|L1	88375.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-60438867-4	chr3	60438347	60439347	+	877.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33983.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0.0	1.5	0.0	0.0	4.0	3.0
Merged-chr1-160280813-4	chr1	160280309	160281309	+	877.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038621, intron 2 of 8)	intron (NM_001038621, intron 2 of 8)	15163.0	NR_035448	100316784.0		NR_035448	ENSMUSG00000089204	Mir1927	mmu-mir-1927	microRNA 1927	ncRNA	0.0	6.0	0.0	0.5	1.0	1.0
Merged-chr1-152291035-3	chr1	152290542	152291542	+	877.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95640.0	NM_025677	66637.0	Mm.379120	NM_025677	ENSMUSG00000014980	Tsen15	5730449L18Rik|AL023077|Sen15	tRNA splicing endonuclease subunit 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145037795-4	chr4	145037283	145038283	+	877.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 65 of 69)	intron (NM_001276465, intron 65 of 69)	144646.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84139842-3	chr15	84139323	84140323	+	877.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16648.0	NM_029427	75772.0	Mm.159565	NM_029427	ENSMUSG00000018868	Pnpla5	4833426H19Rik|GS2L	patatin-like phospholipase domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-20812090-4	chr5	20811586	20812586	+	877.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172992, intron 3 of 17)	intron (NM_172992, intron 3 of 17)	70038.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105518614-7	chr8	105518061	105519061	+	877.1785890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008289)	promoter-TSS (NM_008289)	-185.0	NM_008289	15484.0	Mm.5079	NM_008289	ENSMUSG00000031891	Hsd11b2	11HSD2	hydroxysteroid 11-beta dehydrogenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60209266-4	chr18	60208783	60209783	+	877.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-2794.0	NM_001033767	240327.0	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-87858214-4	chr10	87857733	87858733	+	877.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010512)	promoter-TSS (NM_010512)	-32.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-124128637-2	chr9	124128137	124129137	+	877.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7094.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75062895-2	chr8	75062395	75063395	+	877.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136259, intron 12 of 15)	intron (NM_001136259, intron 12 of 15)	29209.0	NM_011622	21968.0	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18406506-3	chr16	18406016	18407016	+	877.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007744)	TTS (NM_007744)	6978.0	NM_001111063	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4312271-3	chr8	4311768	4312768	+	877.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010485, intron 1 of 5)	ORR1D2|LTR|ERVL-MaLR	12832.0	NM_010485	15568.0	Mm.119162	NM_010485	ENSMUSG00000040028	Elavl1	2410055N02Rik|HUR|Hua|W91709	ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20889402-4	chr9	20888912	20889912	+	877.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145610, exon 3 of 11)	exon (NM_145610, exon 3 of 11)	1237.0	NM_145610	235036.0	Mm.2930	NM_145610	ENSMUSG00000004100	Ppan	A230087P06Rik|SSF1	peter pan homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11534981-4	chr2	11534461	11535461	+	877.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	18968.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.0	1.5	1.5	0.0	0.0	0.5
Merged-chr19-47169159-4	chr19	47168669	47169669	+	877.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-9651.0	NM_021360	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	11.0	6.5	8.0	3.5	0.0	12.0
Merged-chr9-67001275-4	chr9	67000772	67001772	+	877.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25788.0	NM_030717	80907.0	Mm.157882	NM_030717	ENSMUSG00000032370	Lactb	LACT-1|Lact1|Mrpl56	lactamase, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53933505-4	chr11	53933009	53934009	+	877.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-41806.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8921209-3	chr19	8920731	8921731	+	877.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024256, intron 1 of 4)	intron (NM_024256, intron 1 of 4)	838.0	NM_024256	72727.0	Mm.259	NM_024256	ENSMUSG00000071649	B3gat3	2810405M13Rik	beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70119004-3	chr17	70118504	70119504	+	877.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 2 of 14)	intron (NM_001347411, intron 2 of 14)	149931.0	NM_001347411	224997.0	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	DLG associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69037451-3	chr11	69036946	69037946	+	877.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001013256)	TTS (NM_001013256)	-8191.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-109893786-3	chr2	109893261	109894261	+	877.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011699, intron 1 of 4)	MIR|SINE|MIR	2883.0	NM_011699	22343.0	Mm.235300	NM_011699	ENSMUSG00000027162	Lin7c	9130007B12Rik|AI303698|AU019331|AW125731|D2Ertd520e|LIN-7-C|LIN-7C|MALS-3|Veli3	lin-7 homolog C (C. elegans)	protein-coding	10.0	21.0	5.5	3.5	21.0	12.0
Merged-chr15-101277399-3	chr15	101276846	101277846	+	877.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6955.0	NM_026566	68118.0	Mm.482360	NM_026566	ENSMUSG00000037204	Atg101	9430023L20Rik|AA407441|AU022967	autophagy related 101	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-6469587-3	chr13	6469101	6470101	+	877.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78556.0	NM_145131	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47176204-4	chr6	47175710	47176710	+	877.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004357, intron 20 of 23)	intron (NM_001004357, intron 20 of 23)	-68186.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	1.0	4.5	2.5	2.0	1.5	12.5
Merged-chr19-3685985-4	chr19	3685504	3686504	+	877.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008513, intron 1 of 22)	CpG	560.0	NM_008513	16973.0	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127274524-4	chr7	127274020	127275020	+	877.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009266)	promoter-TSS (NM_009266)	-461.0	NM_009266	20768.0	Mm.20294	NM_009266	ENSMUSG00000049091	Sephs2	Sps2|Ysg3	selenophosphate synthetase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96606167-3	chr10	96605676	96606676	+	877.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10825.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145026925-4	chr7	145026432	145027432	+	877.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87007.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	2.0	11.5	2.0	5.5	4.0	4.5
Merged-chr8-26980819-3	chr8	26980310	26981310	+	877.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001101502, exon 2 of 2)	3' UTR (NM_001101502, exon 2 of 2)	3474.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-26695606-3	chr10	26695071	26696071	+	877.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20920.0	NR_033633	667572.0	Mm.482728	NR_033633	ENSMUSG00000098179	Gm8709	EG667572	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.0	1.0	0.5	2.0	0.0	3.0
Merged-chr4-135193038-4	chr4	135192539	135193539	+	877.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72394.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23942391-4	chr18	23941920	23942920	+	877.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12268.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-146948679-3	chr2	146948191	146949191	+	877.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033298, intron 9 of 13)	intron (NM_001033298, intron 9 of 13)	-64308.0	NM_001356403	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	2.5	0.0	1.0	0.5	15.0	11.0
Merged-chr13-37121749-3	chr13	37121266	37122266	+	877.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71522.0	NM_001166391	74145.0	Mm.235105	NM_028784	ENSMUSG00000039109	F13a1	1200014I03Rik|AI462306|F13a	coagulation factor XIII, A1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-45491595-4	chr5	45491086	45492086	+	877.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR40|LTR|ERVK	-1788.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20209066-4	chr13	20208578	20209578	+	877.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 3 of 21)	intron (NM_080288, intron 3 of 21)	118571.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	1.5	1.0	0.5	0.5	12.0	1.0
Merged-chr15-25485585-4	chr15	25485086	25486086	+	877.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71394.0	NR_027376	432939.0	Mm.146555	NM_001013791		Gm5468	100040583|EG432939	predicted gene 5468	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72101566-2	chr6	72101066	72102066	+	877.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	3958.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69031865-3	chr11	69031350	69032350	+	877.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281465, intron 15 of 22)	intron (NM_001281465, intron 15 of 22)	-13787.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-136913280-2	chr3	136912780	136913780	+	877.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 10 of 13)	intron (NM_008913, intron 10 of 13)	243214.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79834980-4	chr10	79834487	79835487	+	877.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	13966.0	NM_030218	78906.0	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-78841960-3	chr2	78841452	78842452	+	877.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-27095.0	NM_009454	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118478067-1	chr7	118477567	118478567	+	877.0	f1_balb.idr	Intergenic	Intergenic	13908.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	13.0	13.0	25.5	17.0	32.0	32.5
Merged-chr10-82683580-1	chr10	82683080	82684080	+	877.0	f1_balb.idr	intron (NM_029102, intron 1 of 9)	B3|SINE|B2	7070.0	NM_029102	74782.0	Mm.191281	NM_029102	ENSMUSG00000020251	Glt8d2	1110021D20Rik	glycosyltransferase 8 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145214204-3	chr6	145213696	145214696	+	877.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163628, intron 1 of 2)	URR1A|DNA|hAT-Charlie	3049.0	NM_001362057	67636.0	Mm.486359	NM_133688	ENSMUSG00000040370	Etfrf1	4930469P12Rik|AL022899|Ghiso|Lyrm5	electron transfer flavoprotein regulatory factor 1	protein-coding	13.0	20.5	10.5	16.0	14.0	14.5
Merged-chr10-23084048-2	chr10	23083548	23084548	+	877.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-263920.0	NM_011545	21412.0	Mm.16497	NM_011545	ENSMUSG00000045680	Tcf21	Pod-1|Pod1|bHLHa23|capsulin|epc|epicardin	transcription factor 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-82773396-1	chr8	82772896	82773896	+	877.0	f1_balb.idr	intron (NM_145600, intron 1 of 9)	intron (NM_145600, intron 1 of 9)	730.0	NM_145600	30932.0	Mm.269248	NM_145600	ENSMUSG00000031711	Zfp330	BC008086|Noa36|Znf330	zinc finger protein 330	protein-coding	6.5	11.5	19.5	3.5	13.5	11.5
Merged-chr8-111945098-2	chr8	111944594	111945594	+	877.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026693, intron 3 of 3)	intron (NM_026693, intron 3 of 3)	4391.0	NM_026693	93739.0	Mm.371666	NM_026693	ENSMUSG00000031950	Gabarapl2	0610012F20Rik|2900019O08Rik|AI173605|GATE-16|Gef2	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2	protein-coding	6.0	8.0	11.0	2.5	4.5	6.0
Merged-chr17-70095863-1	chr17	70095363	70096363	+	877.0	f0_balb.idr	intron (NM_001347411, intron 2 of 14)	intron (NM_001347411, intron 2 of 14)	126790.0	NM_001347411	224997.0	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	DLG associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-72835968-1	chr15	72835468	72836468	+	877.0	f1_c57bl6.idr	intron (NM_001164641, intron 17 of 17)	MTE2b|LTR|ERVL-MaLR	-25644.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	11.5	22.5	15.5	11.5	6.5	13.5
Merged-chr10-81502847-4	chr10	81502334	81503334	+	877.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010304, exon 7 of 7)	3' UTR (NM_010304, exon 7 of 7)	-2697.0	NM_010102	13611.0	Mm.33065	NM_010102	ENSMUSG00000044199	S1pr4	Edg6|Lpc1|S1p4	sphingosine-1-phosphate receptor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-31628481-1	chr18	31627981	31628981	+	877.0	f1_balb.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-5887.0	NM_001357554	269003.0	Mm.194538	NM_172965	ENSMUSG00000024260	Sap130	2610304F09Rik|6720406D06	Sin3A associated protein	protein-coding	2.5	1.0	0.0	0.0	0.0	2.0
Merged-chr3-123386982-3	chr3	123386472	123387472	+	877.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201638)	promoter-TSS (NM_201638)	-982.0	NM_201638	210529.0	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding	1.5	0.0	4.0	0.0	3.0	2.0
Merged-chr7-114531345-2	chr7	114530844	114531844	+	877.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011055, intron 13 of 15)	intron (NM_011055, intron 13 of 15)	31628.0	NR_110407	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	13.0	19.5	12.0	17.0	33.0	9.0
Merged-chr4-147275324-2	chr4	147274824	147275824	+	877.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	CpG	99458.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70848585-3	chr9	70848071	70849071	+	877.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	86237.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167418822-2	chr2	167418322	167419322	+	877.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2888.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141195004-4	chr7	141194514	141195514	+	877.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153777)	promoter-TSS (NM_153777)	-129.0	NM_153777	70552.0	Mm.45104	NM_153777	ENSMUSG00000038637	Lrrc56	5730427C23Rik|BB110509|mFLJ00101	leucine rich repeat containing 56	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25292332-3	chr10	25291871	25292871	+	877.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 1 of 7)	intron (NM_018747, intron 1 of 7)	6792.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	1.5	11.0	2.5	7.0	22.5	4.0
Merged-chr3-16005617-3	chr3	16005120	16006120	+	877.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081687, intron 1 of 3)	Lx2|LINE|L1	712.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23307048-2	chr16	23306548	23307548	+	877.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252506, intron 1 of 6)	intron (NM_001252506, intron 1 of 6)	16578.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-75156313-4	chr5	75155852	75156852	+	877.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083316, intron 1 of 22)	CpG	186.0	NM_001083316	18595.0	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	3.0	5.0	4.5	4.0	2.0	3.0
Merged-chr5-147892423-2	chr5	147891923	147892923	+	877.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357002, intron 2 of 5)	intron (NM_001357002, intron 2 of 5)	2392.0	NM_001357002	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	1.0	3.0	1.5	1.0	3.0	4.0
Merged-chr13-64364421-4	chr13	64363928	64364928	+	877.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009984, intron 7 of 7)	B4A|SINE|B4	6092.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	5.0	1.0	3.5	6.0	4.5	15.5
Merged-chr2-11398604-3	chr2	11398106	11399106	+	877.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040615)	promoter-TSS (NR_040615)	-106.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84155304-2	chr18	84154804	84155804	+	877.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67146.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110681934-2	chr9	110681434	110682434	+	877.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	25431.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141274786-4	chr4	141274286	141275286	+	877.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3653.0	NR_151527	100503810.0		NR_151527	ENSMUSG00000085395	Gm13056	-	predicted gene 13056	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20112747-3	chr13	20112254	20113254	+	877.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	22247.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	1.0	6.0	0.0	3.5	1.5	0.5
Merged-chr9-118776762-2	chr9	118776262	118777262	+	877.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 2 of 13)	ORR1C2|LTR|ERVL-MaLR	65070.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	1.0	7.0	0.5	3.0	3.0	1.0
Merged-chr18-35919783-2	chr18	35919283	35920283	+	877.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45047.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165582456-2	chr1	165581956	165582956	+	877.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	52085.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66560642-2	chr15	66560142	66561142	+	877.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172514, intron 1 of 9)	intron (NM_172514, intron 1 of 9)	404.0	NM_172514	213068.0	Mm.132299	NM_172514	ENSMUSG00000036944	Tmem71	AI661017|E430024D12	transmembrane protein 71	protein-coding	349.5	541.5	416.0	217.5	557.0	394.5
Merged-chr11-68875010-4	chr11	68874517	68875517	+	877.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13536.0	NM_177060	320040.0	Mm.305696	NM_177060	ENSMUSG00000046490	Rnf222	9930039A11Rik	ring finger protein 222	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84019665-2	chr12	84019165	84020165	+	877.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10163.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94364779-2	chr13	94364279	94365279	+	877.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009680, intron 1 of 26)	intron (NM_009680, intron 1 of 26)	5819.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70755849-3	chr11	70755350	70756350	+	877.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8597.0	NM_177565	193043.0	Mm.40966	NM_177565	ENSMUSG00000043602	Zfp3	AI854635|B230309J24|Fnp-1|Zfp-3	zinc finger protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29047399-1	chr19	29046899	29047899	+	877.0	f0_balb.idr	promoter-TSS (NR_028360)	promoter-TSS (NR_028360)	-84.0	NR_028360	67329.0	Mm.394933	NR_028360		1700018L02Rik	-	RIKEN cDNA 1700018L02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55414934-2	chr13	55414434	55415434	+	877.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011392)	TTS (NM_011392)	298.0	NM_029303	75477.0	Mm.432537	NM_029303	ENSMUSG00000044444	Pfn3	1700012P12Rik	profilin 3	protein-coding	0.5	0.0	1.0	0.0	0.0	3.0
Merged-chr2-153338550-3	chr2	153338069	153339069	+	877.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7241.0	NR_040318	72326.0	Mm.400102	NR_040318	ENSMUSG00000073236	2500004C02Rik	-	RIKEN cDNA 2500004C02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8534807-4	chr19	8534313	8535313	+	877.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56441.0	NM_001164634	19879.0	Mm.285294	NM_031194	ENSMUSG00000063796	Slc22a8	Oat3|Roct	solute carrier family 22 (organic anion transporter), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-144896524-2	chr7	144896024	144897024	+	877.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008003)	promoter-TSS (NM_008003)	-8.0	NM_008003	14170.0	Mm.3904	NM_008003	ENSMUSG00000031073	Fgf15	FGF19	fibroblast growth factor 15	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr5-125391220-3	chr5	125390728	125391728	+	877.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1211.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8225960-4	chr17	8225512	8226512	+	876.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10031.0	NM_001190333	12458.0	Mm.8007	NM_009835	ENSMUSG00000040899	Ccr6	CC-CKR-6|CCR-6|Cmkbr6|KY411	chemokine (C-C motif) receptor 6	protein-coding	4.5	8.0	11.5	4.0	12.5	7.0
Merged-chr15-36367528-4	chr15	36367000	36368000	+	876.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-84353.0	NM_001357631	30945.0	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78407803-4	chr17	78407301	78408301	+	876.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360407, intron 2 of 9)	intron (NM_001360407, intron 2 of 9)	10351.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101366560-4	chr7	101366047	101367047	+	876.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	-11575.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	2.5	10.0	12.0	14.0	19.0	30.5
Merged-chr17-33637901-8	chr17	33637463	33638463	+	876.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028279)	promoter-TSS (NR_028279)	-93.0	NM_001002842	378460.0	Mm.272606	NM_001002842	ENSMUSG00000032739	Pram1	AY665714	PML-RAR alpha-regulated adaptor molecule 1	protein-coding	24.5	71.0	64.0	45.0	63.5	64.0
Merged-chr7-135669420-4	chr7	135668819	135669819	+	876.9270630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316681, intron 9 of 17)	intron (NM_001316681, intron 9 of 17)	-17005.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127165814-3	chr10	127165274	127166274	+	876.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001244618)	promoter-TSS (NM_001244618)	-57.0	NM_027739	14421.0	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122509332-4	chr3	122508856	122509856	+	876.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013867, intron 5 of 11)	intron (NM_013867, intron 5 of 11)	25787.0	NM_001355264	29815.0	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110297308-4	chr9	110296840	110297840	+	876.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7852.0	NM_001081381	72341.0	Mm.374250	NM_001081381	ENSMUSG00000054836	Elp6	2610001P13Rik|2610002I17Rik|AV159994|Tmem103	elongator acetyltransferase complex subunit 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84895692-4	chr2	84895192	84896192	+	876.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9000.0	NM_199223	269295.0	Mm.86447	NM_199223	ENSMUSG00000050896	Rtn4rl2	Ngr2|Ngrh1|Ngrl3	reticulon 4 receptor-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128616020-4	chr4	128615491	128616491	+	876.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_205823, exon 1 of 1)	exon (NM_205823, exon 1 of 1)	2628.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	31.5	90.5	77.5	45.5	78.0	85.0
Merged-chr4-151073594-4	chr4	151073145	151074145	+	876.8916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 22 of 23)	intron (NM_001081557, intron 22 of 23)	-15692.0	NM_009498	22319.0	Mm.273930	NM_009498	ENSMUSG00000028955	Vamp3	D130027G05Rik|VAMP-3|ceb	vesicle-associated membrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117196897-3	chr11	117196377	117197377	+	876.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2784.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50866025-3	chr9	50865531	50866531	+	876.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286553, intron 5 of 16)	MTC|LTR|ERVL-MaLR	9107.0	NM_001286553	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	4.0	4.5	0.0	0.0	1.5	2.0
Merged-chr17-67345979-3	chr17	67345479	67346479	+	876.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	B4|SINE|B4	8480.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	46.5	108.0	67.5	43.5	109.5	83.5
Merged-chr4-132310062-4	chr4	132309563	132310563	+	876.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_034046)	promoter-TSS (NR_034046)	110.0	NR_034050	100217418.0	Mm.258912	NR_034050	ENSMUSG00000064604	Snora44	MBI-64	small nucleolar RNA, H/ACA box 44	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112002769-4	chr13	112002275	112003275	+	876.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134839.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	8.0	4.0	13.0	4.5	2.5	11.5
Merged-chr2-35162814-4	chr2	35162314	35163314	+	876.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_012018, exon 31 of 44)	exon (NM_012018, exon 31 of 44)	30580.0	NM_001290635	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151615842-4	chr1	151615335	151616335	+	876.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	44462.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23719080-2	chr11	23718580	23719580	+	876.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033654, intron 14 of 17)	L1M4|LINE|L1	51890.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-58122882-4	chr3	58122380	58123380	+	876.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40927.0	NR_040538	67850.0	Mm.416968	NR_040538	ENSMUSG00000100666	1700007F19Rik	-	RIKEN cDNA 1700007F19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-63381749-3	chr10	63381256	63382256	+	876.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253685)	promoter-TSS (NM_001253685)	-687.0	NM_001253685	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48274275-3	chr17	48273761	48274761	+	876.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033922, intron 5 of 5)	intron (NM_001033922, intron 5 of 5)	9966.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35027870-4	chr9	35027369	35028369	+	876.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190912, intron 12 of 15)	intron (NM_001190912, intron 12 of 15)	-88859.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0.0	2.0	7.5	0.0	2.5	1.5
Merged-chr6-67029596-2	chr6	67029096	67030096	+	876.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7003.0	NR_040278	320172.0	Mm.449039	NR_040278	ENSMUSG00000087231	E230016M11Rik	-	RIKEN cDNA E230016M11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87562551-4	chr3	87562058	87563058	+	876.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36980.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	4.5	13.5	14.5	30.5	7.5	8.0
Merged-chr5-146807906-3	chr5	146807391	146808391	+	876.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-12935.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	104.5	240.0	228.5	74.0	204.5	175.0
Merged-chr8-125227422-4	chr8	125226999	125227999	+	876.830322	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 10 of 12)	intron (NM_174854, intron 10 of 12)	173304.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	30.5	21.5	15.0	1.5	8.0	9.5
Merged-chr16-33546565-4	chr16	33546064	33547064	+	876.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 3 of 11)	intron (NM_001083902, intron 3 of 11)	27969.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52306075-4	chr6	52305575	52306575	+	876.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7423.0	NM_007966	14028.0	Mm.389754	NM_007966	ENSMUSG00000005503	Evx1	Evx-1	even-skipped homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34250747-3	chr17	34250257	34251257	+	876.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11852.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	16.0	33.5	5.0	60.0	275.5	98.5
Merged-chr5-122899473-7	chr5	122898957	122899957	+	876.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003953, intron 12 of 22)	intron (NM_001003953, intron 12 of 22)	893.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	20.0	38.0	33.5	25.5	83.0	34.5
Merged-chr13-89539447-6	chr13	89538977	89539977	+	876.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1159.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	4.5	0.0	0.5	1.0	4.5	0.0
Merged-chr16-56062232-4	chr16	56061709	56062709	+	876.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360073, intron 1 of 24)	intron (NM_001360073, intron 1 of 24)	4679.0	NM_001360073	66315.0	Mm.255784	NM_025483	ENSMUSG00000052917	Senp7	2410152H17Rik|2810413I22Rik|2900036C23Rik|6030449K19Rik|AI790676	SUMO1/sentrin specific peptidase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62252487-4	chr18	62251989	62252989	+	876.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-71715.0	NM_008313	15562.0	Mm.20440	NM_008313	ENSMUSG00000026322	Htr4	5-HT-4|5-HT4|5-HT<4L>|5HTR4	5 hydroxytryptamine (serotonin) receptor 4	protein-coding	50.0	65.0	37.0	6.5	52.5	23.0
Merged-chr10-41684790-3	chr10	41684289	41685289	+	876.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 4 of 47)	intron (NM_001358562, intron 4 of 47)	31674.0	NM_001358562	75973.0	Mm.228517	NM_029493	ENSMUSG00000075225	Ccdc162	5033413D22Rik|Ccdc162p|Gm29096|Gm61|Gm6976	coiled-coil domain containing 162	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-72216657-4	chr11	72216163	72217163	+	876.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163728, exon 1 of 1)	3' UTR (NM_001163728, exon 1 of 1)	-1071.0	NM_026068	67279.0	Mm.159496	NM_026068	ENSMUSG00000020801	Med31	3110004H13Rik|CGI-125|l11Jus15	mediator complex subunit 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-33983745-4	chr1	33983253	33984253	+	876.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276764, intron 3 of 102)	Lx6|LINE|L1	-28072.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-174036256-4	chr1	174035732	174036732	+	876.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4477.0	NM_172648	226695.0	Mm.425061	NM_172648	ENSMUSG00000054203	Ifi205	D3|D3cDNA|Ifi205a	interferon activated gene 205	protein-coding	9.0	0.5	11.5	9.5	10.5	7.5
Merged-chr15-76666435-2	chr15	76665937	76666937	+	876.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358910, intron 15 of 18)	intron (NM_001358910, intron 15 of 18)	3511.0	NM_007989	14106.0	Mm.42011	NM_007989	ENSMUSG00000033837	Foxh1	Fast1|Fast2|fast-1|fast-2	forkhead box H1	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr12-16997498-2	chr12	16996942	16997942	+	876.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172574, intron 3 of 6)	intron (NM_172574, intron 3 of 6)	2676.0	NM_172574	217430.0	Mm.379451	NM_172574	ENSMUSG00000045679	Pqlc3	C78076|E030024M05Rik	PQ loop repeat containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr16-30975385-4	chr16	30974867	30975867	+	876.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 3 of 3)	intron (NM_198626, intron 3 of 3)	106065.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	57.5	147.5	122.5	96.5	147.5	141.0
Merged-chr14-70889950-4	chr14	70889447	70890447	+	876.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008115)	promoter-TSS (NM_008115)	-160.0	NM_001302095	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	9.0	13.0	19.0	12.0	40.0	33.5
Merged-chr5-67451113-4	chr5	67450580	67451580	+	876.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-12818.0	NR_110363	320479.0	Mm.387187	NR_015582	ENSMUSG00000107385	C330024D21Rik	-	RIKEN cDNA C330024D21 gene	ncRNA	3.5	7.5	5.5	11.0	7.5	3.5
Merged-chr16-20309634-4	chr16	20309078	20310078	+	876.7041630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_183158, exon 9 of 9)	3' UTR (NM_183158, exon 9 of 9)	-7216.0	NM_001005767	381038.0	Mm.371737	NM_001005767	ENSMUSG00000033918	Parl	D16Ertd607e|PRO2207|PSARL1|PSENIP2|Psarl	presenilin associated, rhomboid-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-108485431-4	chr5	108484929	108485929	+	876.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172716, intron 6 of 10)	intron (NM_172716, intron 6 of 10)	24097.0	NM_172716	69587.0	Mm.261218	NM_172716	ENSMUSG00000033623	Pcgf3	2310035N15Rik|AI662857|D630042K08Rik|DONG1|E430039C14|RNF3A|Rnf3	polycomb group ring finger 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13200559-4	chr8	13200045	13201045	+	876.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025768)	promoter-TSS (NM_025768)	79.0	NM_025768	66790.0	Mm.34901	NM_025768	ENSMUSG00000038515	Grtp1	5430401C05Rik|C81211|Tbc1d6	GH regulated TBC protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-36473469-4	chr3	36472958	36473958	+	876.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009673, intron 2 of 12)	intron (NM_009673, intron 2 of 12)	2066.0	NR_105976	102466786.0		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75715085-3	chr15	75714571	75715571	+	876.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008164)	TTS (NM_008164)	10783.0	NM_008164	14787.0	Mm.57052	NM_008164	ENSMUSG00000022580	Rhpn1	BB023497|Grbp|Rhophilin|mKIAA1929	rhophilin, Rho GTPase binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52610670-4	chr13	52610171	52611171	+	876.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 1 of 13)	intron (NM_011518, intron 1 of 13)	13789.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139389878-4	chr5	139389398	139390398	+	876.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001038703)	promoter-TSS (NM_001038703)	-6.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-52368454-3	chr11	52367971	52368971	+	876.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011694, intron 1 of 8)	intron (NM_011694, intron 1 of 8)	7609.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135268288-4	chr1	135267774	135268774	+	876.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159624, intron 4 of 9)	intron (NM_001159624, intron 4 of 9)	-9802.0	NM_007921	13710.0	Mm.441439	NM_007921	ENSMUSG00000003051	Elf3	ESE-1|ESX|jen	E74-like factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84687021-6	chr8	84686510	84687510	+	876.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025788, intron 1 of 5)	intron (NM_025788, intron 1 of 5)	852.0	NM_025788	66830.0	Mm.289698	NM_025788	ENSMUSG00000001910	Nacc1	2010001H03Rik|4930511N13Rik|Btbd14b|Nac1	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	protein-coding	21.0	76.0	80.0	16.0	46.5	28.5
Merged-chr4-7405290-4	chr4	7404814	7405814	+	876.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-155374.0	NR_040645	71510.0	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-85653634-3	chr15	85653107	85654107	+	876.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50166.0	NR_110483	102800312.0	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	16.0	24.5	20.0	9.5	40.5	36.5
Merged-chr5-134193799-2	chr5	134193299	134194299	+	876.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359852, intron 3 of 14)	intron (NM_001359852, intron 3 of 14)	9761.0	NM_053266	114674.0	Mm.218744	NM_053266	ENSMUSG00000015942	Gtf2ird2	1700012P16Rik	GTF2I repeat domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39983122-3	chr1	39982669	39983669	+	876.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001252201, exon 7 of 31)	exon (NM_001252201, exon 7 of 31)	82256.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45840598-3	chr2	45840097	45841097	+	876.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143992.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-93917370-4	chr8	93916870	93917870	+	876.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113384, intron 3 of 7)	intron (NM_001113384, intron 3 of 7)	95270.0	NM_011787	23802.0	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91383082-2	chr16	91382582	91383582	+	876.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 1 of 7)	intron (NM_001347258, intron 1 of 7)	10299.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128140664-2	chr10	128140164	128141164	+	876.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039080, intron 6 of 13)	B1_Mus2|SINE|Alu	35904.0	NM_019711	56516.0	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-14765020-3	chr9	14764532	14765532	+	876.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029306, intron 2 of 3)	intron (NM_029306, intron 2 of 3)	5998.0	NM_029306	69325.0	Mm.440453	NM_029306	ENSMUSG00000031927	1700012B09Rik	1700007P19Rik	RIKEN cDNA 1700012B09 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46953617-3	chr8	46953117	46954117	+	876.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33270.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21843480-3	chr14	21842961	21843961	+	876.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011695, intron 8 of 9)	intron (NM_011695, intron 8 of 9)	-4117.0	NM_176925	319486.0	Mm.390671	NM_176925	ENSMUSG00000090564	A430057M04Rik	-	RIKEN cDNA A430057M04 gene	protein-coding	4.0	20.5	8.5	3.0	16.5	10.0
Merged-chr9-22307041-2	chr9	22306541	22307541	+	876.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145612, intron 1 of 7)	intron (NM_145612, intron 1 of 7)	597.0	NM_145612	235050.0	Mm.306038	NM_145612	ENSMUSG00000066829	Zfp810	BC005471	zinc finger protein 810	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118140376-3	chr10	118139886	118140886	+	876.650024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1401.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	2.0	8.0	1.5	3.5	7.5	9.5
Merged-chr12-51848073-4	chr12	51847517	51848517	+	876.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18481.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69598368-5	chr3	69597845	69598845	+	876.6333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020026, intron 1 of 2)	intron (NM_020026, intron 1 of 2)	615.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	28.0	49.5	39.5	20.0	26.0	38.0
Merged-chr6-89628210-4	chr6	89627649	89628649	+	876.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15839.0	NM_001178060	232223.0	Mm.229332	NM_153162	ENSMUSG00000000811	Txnrd3	AI196535|TGR|TR2	thioredoxin reductase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128298047-4	chr7	128297523	128298523	+	876.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145590, exon 1 of 13)	exon (NM_145590, exon 1 of 13)	108.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84703664-2	chr8	84703218	84704218	+	876.625	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081981)	TTS (NM_001081981)	2261.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	7.0	0.0	1.5	7.5	3.0	2.0
Merged-chr19-45944521-3	chr19	45944007	45945007	+	876.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198296, intron 15 of 25)	Lx8|LINE|L1	-53630.0	NR_152221	100174921.0	Mm.487206	NR_152221		4930505N22Rik	-	RIKEN cDNA 4930505N22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100926405-4	chr12	100925888	100926888	+	876.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026681, intron 25 of 29)	intron (NM_026681, intron 25 of 29)	-18190.0	NM_001177673	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	2.5	0.0	3.0	0.0	3.0	4.0
Merged-chr15-89181926-4	chr15	89181368	89182368	+	876.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027081)	TTS (NM_027081)	-1080.0	NM_138749	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-4380768-4	chr9	4380293	4381293	+	876.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145609, intron 1 of 2)	intron (NM_145609, intron 1 of 2)	4241.0	NM_145609	78100.0	Mm.206549	NM_145609	ENSMUSG00000041124	Msantd4	8430410K20Rik|Mysantd4	Myb/SANT-like DNA-binding domain containing 4 with coiled-coils	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6722112-4	chr2	6721611	6722611	+	876.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310447)	promoter-TSS (NM_001310447)	-449.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-31806505-4	chr13	31805991	31806991	+	876.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008592)	promoter-TSS (NM_008592)	-155.0	NM_008592	17300.0	Mm.12949	NM_008592	ENSMUSG00000050295	Foxc1	FREAC3|Fkh1|Mf1|Mf4|ch|fkh-1|frkhda	forkhead box C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96692778-4	chr3	96692334	96693334	+	876.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3541.0	NM_146135	229615.0	Mm.1635	NM_018812	ENSMUSG00000028101	Pias3	Pias3l	protein inhibitor of activated STAT 3	protein-coding	15.0	28.0	5.0	13.0	20.5	12.0
Merged-chr6-87027211-4	chr6	87026713	87027713	+	876.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020045, intron 7 of 7)	intron (NM_020045, intron 7 of 7)	-15633.0	NM_013528	14583.0	Mm.19893	NM_013528	ENSMUSG00000029992	Gfpt1	2810423A18Rik|AI324119|AI449986|GFA|GFAT|GFAT1|GFAT1m|Gfpt	glutamine fructose-6-phosphate transaminase 1	protein-coding	1.0	3.5	11.0	3.0	3.0	8.0
Merged-chr6-97788748-4	chr6	97788254	97789254	+	876.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33A|LTR|ERVL	-18304.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25365613-4	chr15	25365099	25366099	+	876.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	48165.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11568125-4	chr2	11567633	11568633	+	876.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-14204.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53315863-2	chr4	53315363	53316363	+	876.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45631.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35046099-2	chr9	35045599	35046599	+	876.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009178)	TTS (NM_009178)	-70629.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0.0	0.0	0.0	1.0	1.5	0.0
Merged-chr19-56728254-2	chr19	56727754	56728754	+	876.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5882.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-102745073-2	chr13	102744574	102745574	+	876.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 26 of 28)	intron (NM_175171, intron 26 of 28)	-15181.0	NR_130318	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	3.5	1.0	1.0	2.0	0.0	1.0
Merged-chr17-28332019-2	chr17	28331519	28332519	+	876.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011287)	TTS (NM_011287)	3454.0	NM_001357628	19896.0	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-57862474-2	chr18	57861974	57862974	+	876.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR40b|LTR|ERVL	-16204.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	1.5	0.0	0.0	0.0	0.0	1.0
Merged-chr17-70854211-3	chr17	70853732	70854732	+	876.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164074)	promoter-TSS (NM_001164074)	-700.0	NM_001164074	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	32.0	67.0	78.0	46.5	78.5	85.5
Merged-chr15-12375099-2	chr15	12374599	12375599	+	876.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081064, exon 19 of 24)	exon (NM_001081064, exon 19 of 24)	53603.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-51458391-2	chr1	51457891	51458891	+	876.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20008.0	NM_001310548	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-50095852-4	chr18	50095349	50096349	+	876.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-32352.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35889715-1	chr16	35889215	35890215	+	876.5	f1_c57bl6.idr	Intergenic	LTRIS_Mus|LTR|ERV1	-18333.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-94286563-2	chr2	94286063	94287063	+	876.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25164.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111831338-3	chr10	111830849	111831849	+	876.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	43027.0	NR_046029	629206.0	Mm.391444	NR_046029	ENSMUSG00000112533	Gm20758	-	predicted gene, 20758	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145253329-2	chr4	145252829	145253829	+	876.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-6459.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4633502-2	chr7	4633002	4634002	+	876.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172894, exon 19 of 24)	exon (NM_172894, exon 19 of 24)	-3020.0	NM_023440	68255.0	Mm.389784	NM_023440	ENSMUSG00000045282	Tmem86b	C330014O21Rik	transmembrane protein 86B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118508081-2	chr11	118507581	118508581	+	876.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024931, intron 5 of 14)	intron (NM_001024931, intron 5 of 14)	31249.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75696642-2	chr18	75696143	75697143	+	876.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 1 of 11)	CpG	1053.0	NM_201354	269037.0	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	0.0	7.5	5.5	3.5	0.0	4.5
Merged-chr3-55115017-4	chr3	55114508	55115508	+	876.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001144987, intron 1 of 8)	intron (NM_001144987, intron 1 of 8)	2842.0	NM_001144987	229285.0	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|Spart|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4171963-2	chr19	4171463	4172463	+	876.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134148, intron 4 of 9)	intron (NM_134148, intron 4 of 9)	3516.0	NM_134148	107239.0	Mm.482310	NM_134148	ENSMUSG00000075289	Carns1	AI790298|Atpgd1|mKIAA1394	carnosine synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35751731-2	chr7	35751231	35752231	+	876.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178704, intron 2 of 18)	RSINE1|SINE|B4	2723.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	5.0	7.5	4.0	0.0	2.5	1.0
Merged-chr19-4301007-2	chr19	4300507	4301507	+	876.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	5215.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80999314-2	chr10	80998814	80999814	+	876.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010319, intron 1 of 3)	intron (NM_010319, intron 1 of 3)	2051.0	NM_001038655	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21045087-2	chr19	21044587	21045587	+	876.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59623.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56506835-2	chr17	56506335	56507335	+	876.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5648.0	NM_011483	20834.0	Mm.76862	NM_011483	ENSMUSG00000044526	Znrf4	1700094M01Rik|Ssrzf1|spzn	zinc and ring finger 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23804986-2	chr18	23804520	23805520	+	876.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	1050.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	83.0	187.5	80.0	58.5	156.0	102.0
Merged-chr5-136991457-2	chr5	136990957	136991957	+	876.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030483)	promoter-TSS (NR_030483)	24.0	NR_030483	735283.0		NR_030483	ENSMUSG00000076240	Mir702	Mirn702|mir-702|mmu-mir-702	microRNA 702	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-80013276-2	chr9	80012776	80013776	+	876.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357352)	promoter-TSS (NM_001357352)	-425.0	NM_001357352	70598.0	Mm.23049	NM_001081243	ENSMUSG00000034898	Filip1	5730485H21Rik|AI843021	filamin A interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-127272327-2	chr1	127271827	127272827	+	876.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 2 of 17)	ID_B1|SINE|B4	67341.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132961612-2	chr4	132961112	132962112	+	876.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12483.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-83843621-5	chr3	83843073	83844073	+	876.4916380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1965.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124900021-4	chr5	124899524	124900524	+	876.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37319.0	NM_001081750	269704.0	Mm.138617	NM_001081750	ENSMUSG00000079215	Zfp664	AW060232|D930038J03Rik|ZFOC1|Znf664	zinc finger protein 664	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105499341-3	chr8	105498847	105499847	+	876.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2445.0	NM_175160	70796.0	Mm.100917	NM_175160	ENSMUSG00000039199	Zdhhc1	4432412D04Rik|DHHC-1	zinc finger, DHHC domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94057793-3	chr13	94057193	94058193	+	876.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172589)	promoter-TSS (NM_172589)	-103.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13837187-4	chr10	13836716	13837716	+	876.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025446, intron 1 of 5)	intron (NM_025446, intron 1 of 5)	31741.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	24.0	62.0	45.0	32.0	116.0	106.5
Merged-chr17-67342281-4	chr17	67341834	67342834	+	876.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	RMER15|LTR|ERVL	12125.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	10.0	48.0	16.5	10.5	45.5	15.0
Merged-chr15-85091449-4	chr15	85091017	85092017	+	876.4226070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080470, intron 16 of 24)	intron (NM_080470, intron 16 of 24)	40440.0	NM_080470	140557.0	Mm.182737	NM_080470	ENSMUSG00000022432	Smc1b	SMC-1B|SMC1beta|Smc1l2	structural maintenance of chromosomes 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107657829-3	chr13	107657323	107658323	+	876.42218	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-29574.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	1.5	0.0	3.5	4.0	8.5	6.0
Merged-chr1-161550872-4	chr1	161550374	161551374	+	876.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56217.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38695605-4	chr6	38695099	38696099	+	876.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32530.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-61160715-3	chr1	61160206	61161206	+	876.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	182792.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	5.0	0.0	0.0	0.0	4.0	0.0
Merged-chr4-59450407-4	chr4	59449903	59450903	+	876.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11770.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0.0	0.0	3.5	1.0	3.5	4.0
Merged-chr9-120029168-2	chr9	120028668	120029668	+	876.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G3|LTR|ERVL-MaLR	-5570.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	11.0	7.5	16.5	13.0	4.0	9.0
Merged-chr5-125407439-2	chr5	125406939	125407939	+	876.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-17422.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	11.0	2.0	0.5	16.0	2.0	0.5
Merged-chr1-165765295-7	chr1	165764718	165765718	+	876.397949	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149310, intron 2 of 4)	B4|SINE|B4	1460.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-89876817-4	chr1	89876322	89877322	+	876.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 15 of 16)	intron (NM_001037136, intron 15 of 16)	54354.0	NM_010262	14472.0	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74687422-4	chr15	74686923	74687923	+	876.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14853.0	NM_018790	11838.0	Mm.491310	NM_018790	ENSMUSG00000022602	Arc	Arc3.1|C86064|arg3.1|mArc	activity regulated cytoskeletal-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151963585-4	chr1	151963103	151964103	+	876.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 3 of 5)	intron (NM_197990, intron 3 of 5)	126717.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38761448-4	chr6	38760954	38761954	+	876.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 2 of 14)	intron (NM_010433, intron 2 of 14)	75857.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-104986878-4	chr5	104986362	104987362	+	876.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4145.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	35.5	63.0	33.5	19.0	53.5	36.5
Merged-chr6-113469661-4	chr6	113469162	113470162	+	876.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001034029, exon 14 of 14)	exon (NM_001034029, exon 14 of 14)	-1793.0	NM_178942	171095.0	Mm.213397	NM_134159	ENSMUSG00000030281	Il17rc	1110025H02Rik|Gm19850|IL-17RC|IL17-RC|IL17-RL|Il17rl	interleukin 17 receptor C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-119051934-4	chr10	119051440	119052440	+	876.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1441.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8446062-4	chr15	8445565	8446565	+	876.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1602.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74366791-2	chr1	74366291	74367291	+	876.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033345, intron 7 of 9)	intron (NM_001033345, intron 7 of 9)	4683.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122645427-2	chr5	122644927	122645927	+	876.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038845, intron 1 of 12)	L1MB8|LINE|L1	1516.0	NM_001038887	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	0.0	0.0	0.5	0.0	2.0	0.0
Merged-chr9-44882811-3	chr9	44882323	44883323	+	876.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1549.0	NM_001081049	214162.0	Mm.2389	NM_001081049	ENSMUSG00000002028	Kmt2a	6430520K01|ALL-1|All1|Cxxc7|HRX|HTRX1|Mll|Mll1|mKIAA4050	lysine (K)-specific methyltransferase 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84313715-3	chr18	84313220	84314220	+	876.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 8 of 8)	intron (NM_001033341, intron 8 of 8)	225562.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65956617-3	chr3	65956112	65957112	+	876.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355433, intron 3 of 11)	intron (NM_001355433, intron 3 of 11)	1637.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	28.5	107.0	67.0	24.0	96.5	49.0
Merged-chr7-121271273-3	chr7	121270763	121271763	+	876.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-121033.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99055847-3	chr15	99055363	99056363	+	876.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163589, intron 1 of 8)	intron (NM_001163589, intron 1 of 8)	689.0	NM_001163589	19132.0	Mm.2477	NM_013639	ENSMUSG00000023484	Prph	Prph1	peripherin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80792729-3	chr15	80792224	80793224	+	876.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144812, intron 4 of 24)	Lx8|LINE|L1	-5886.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150113074-3	chr4	150112574	150113574	+	876.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6270.0	NM_019741	56485.0	Mm.260220	NM_019741	ENSMUSG00000028976	Slc2a5	AI526984|Glut5|Slc5a	solute carrier family 2 (facilitated glucose transporter), member 5	protein-coding	0.5	3.5	7.5	1.0	2.0	4.5
Merged-chr14-48457444-4	chr14	48456945	48457945	+	876.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310584, intron 4 of 16)	intron (NM_001310584, intron 4 of 16)	11093.0	NR_132324	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	41.5	107.5	115.0	76.5	88.0	74.0
Merged-chr11-113326540-1	chr11	113326040	113327040	+	876.3333130000001	f1_c57bl6.idr	intron (NM_027216, intron 6 of 9)	intron (NM_027216, intron 6 of 9)	-116871.0	NR_040276	319871.0	Mm.383743	NR_040276	ENSMUSG00000085421	4732490B19Rik	-	RIKEN cDNA 4732490B19 gene	ncRNA	4.0	0.0	1.5	0.0	0.0	2.5
Merged-chr1-178492662-3	chr1	178492178	178493178	+	876.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36447.0	NM_001161665	269152.0	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171238667-3	chr1	171238171	171239171	+	876.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153064, intron 5 of 12)	intron (NM_153064, intron 5 of 12)	-4322.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	0.5	0.0	10.0	1.0	3.5	2.5
Merged-chr7-109646691-4	chr7	109646189	109647189	+	876.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie2a|DNA|hAT-Charlie	-29542.0	NM_029811	76954.0	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60930967-4	chr11	60930510	60931510	+	876.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027800, intron 1 of 1)	L2a|LINE|L2	857.0	NR_027800	24082.0	Mm.46270	NM_025293	ENSMUSG00000042549	Map2k3os	F3-1|Gm16516|Gtlf3a	mitogen-activated protein kinase kinase 3, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-56715744-4	chr16	56715259	56716259	+	876.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357126, intron 1 of 8)	intron (NM_001357126, intron 1 of 8)	1691.0	NM_001357124	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9841278-3	chr18	9840768	9841768	+	876.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 3 of 9)	intron (NM_130449, intron 3 of 9)	-116912.0	NM_153552	225160.0	Mm.219648	NM_153552	ENSMUSG00000024287	Thoc1	3110002N20Rik|AW107452|NMP-84	THO complex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84089269-8	chr18	84088696	84089696	+	876.2604369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146090, intron 1 of 1)	intron (NM_146090, intron 1 of 1)	1038.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116725454-4	chr6	116724957	116725957	+	876.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8699.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-30847704-4	chr3	30847208	30848208	+	876.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8242.0	NM_001134386	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102390128-4	chr12	102389604	102390604	+	876.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001161365, exon 10 of 10)	exon (NM_001161365, exon 10 of 10)	49709.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8601773-2	chr11	8601273	8602273	+	876.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	62762.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136172541-2	chr5	136172041	136173041	+	876.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1885.0	NM_178751	269717.0	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr9-57555855-2	chr9	57555355	57556355	+	876.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-3103.0	NM_025837	110119.0	Mm.247218	NM_025837	ENSMUSG00000032306	Mpi	1110002E17Rik|AI315153|Mpi-1|Mpi1	mannose phosphate isomerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46628868-4	chr8	46628362	46629362	+	876.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284409, intron 1 of 6)	intron (NM_001284409, intron 1 of 6)	11571.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-151108703-3	chr5	151108226	151109226	+	876.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153382, intron 1 of 13)	intron (NR_153382, intron 1 of 13)	81467.0	NM_001163493	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102190168-3	chr11	102189681	102190681	+	876.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175935, intron 1 of 5)	intron (NM_175935, intron 1 of 5)	482.0	NM_175935	68401.0	Mm.22385	NM_175935	ENSMUSG00000034793	G6pc3	0710001K01Rik|AU019276|AU045429|AV128920|AW545836|UGRP	glucose 6 phosphatase, catalytic, 3	protein-coding	5.0	9.0	12.0	5.0	8.0	4.5
Merged-chr5-122965690-3	chr5	122965193	122966193	+	876.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003953, intron 4 of 22)	intron (NM_001003953, intron 4 of 22)	23406.0	NM_001003953	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	0.0	0.0	0.0	2.0	0.0	1.5
Merged-chr11-100318897-2	chr11	100318397	100319397	+	876.214294	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1052.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134761912-4	chr4	134761430	134762430	+	876.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145554, intron 1 of 8)	intron (NM_145554, intron 1 of 8)	6074.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27285165-2	chr7	27284665	27285665	+	876.2000119999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26404.0	NM_010950	18223.0	Mm.458153	NM_010950	ENSMUSG00000063160	Numbl	nbl	numb-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118424866-3	chr11	118424371	118425371	+	876.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3586.0	NM_001204129	56745.0	Mm.23845	NM_019959	ENSMUSG00000017446	C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88122651-3	chr10	88122112	88123112	+	876.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029249, intron 6 of 10)	RSINE1|SINE|B4	24329.0	NM_029249	75317.0	Mm.179378	NM_029249	ENSMUSG00000035365	Parpbp	4930547N16Rik|AI503644|PARI	PARP1 binding protein	protein-coding	11.0	25.5	3.5	31.0	70.5	14.0
Merged-chr11-95417501-4	chr11	95417005	95418005	+	876.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359107, intron 1 of 9)	intron (NM_001359107, intron 1 of 9)	3422.0	NM_001359107	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-87652434-4	chr4	87651930	87652930	+	876.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153893.0	NM_001286158	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91548788-3	chr16	91548258	91549258	+	876.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008338, intron 1 of 6)	B3|SINE|B2	1664.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-125775143-4	chr2	125774643	125775643	+	876.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177608, intron 2 of 17)	intron (NM_177608, intron 2 of 17)	7727.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30872693-2	chr16	30872193	30873193	+	876.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	208739.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17449523-3	chr17	17449055	17450055	+	876.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025681, intron 4 of 5)	intron (NM_025681, intron 4 of 5)	46869.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61866507-3	chr11	61866015	61867015	+	876.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11423.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62583295-6	chr4	62582762	62583762	+	876.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019492, intron 3 of 19)	intron (NM_019492, intron 3 of 19)	23415.0	NM_019492	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70991994-3	chr17	70991435	70992435	+	876.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1419.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	24.0	66.0	39.0	46.5	170.0	109.5
Merged-chr13-97208280-4	chr13	97207760	97208760	+	876.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9903.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-53820223-4	chr1	53819777	53820777	+	876.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 28 of 28)	intron (NM_001001883, intron 28 of 28)	-29147.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94074529-4	chr11	94073998	94074998	+	876.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025430, intron 5 of 25)	Lx8|LINE|L1	30293.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	46.5	95.0	73.0	37.5	106.5	80.5
Merged-chr14-63144336-4	chr14	63143851	63144851	+	876.1166380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010191)	TTS (NM_010191)	21889.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-112258725-3	chr7	112258220	112259220	+	876.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001193305, intron 2 of 25)	intron (NM_001193305, intron 2 of 25)	32884.0	NM_001193305	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	0.0	0.0	7.0	1.5	6.0	7.5
Merged-chr15-99396007-6	chr15	99395421	99396421	+	876.1083369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171036, intron 2 of 10)	intron (NM_001171036, intron 2 of 10)	2702.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	82.5	232.5	175.5	119.5	305.5	223.0
Merged-chr12-103437832-4	chr12	103437332	103438332	+	876.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194067, intron 4 of 5)	intron (NM_194067, intron 4 of 5)	3643.0	NM_194069	52668.0	Mm.2121	NM_026790	ENSMUSG00000064215	Ifi27	1110013J02Rik|2900026P10Rik|D12Ertd647e|ISG12a|Ifi27l1	interferon, alpha-inducible protein 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107567623-2	chr11	107567123	107568123	+	876.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_198298, intron 2 of 31)	intron (NM_198298, intron 2 of 31)	19663.0	NM_198298	78455.0	Mm.272047	NM_198298	ENSMUSG00000020721	Helz	3110078M01Rik|9430093I07Rik|9630002H22Rik|AI851979|DRHC	helicase with zinc finger domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62132810-4	chr10	62132317	62133317	+	876.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009719)	promoter-TSS (NM_009719)	-273.0	NM_009719	11925.0	Mm.57236	NM_009719	ENSMUSG00000044312	Neurog3	Atoh5|Math4B|bHLHa7|ngn3	neurogenin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6952445-4	chr19	6951949	6952949	+	876.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007522)	TTS (NM_007522)	9887.0	NM_001285453	12015.0	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-94226250-3	chr6	94225756	94226756	+	876.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130996, intron 1 of 1)	intron (NR_130996, intron 1 of 1)	11186.0	NR_130996	78178.0	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107626883-3	chr9	107626351	107627351	+	876.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008138, intron 1 of 8)	intron (NM_008138, intron 1 of 8)	8491.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	8.0	15.0	46.5	2.5	23.0	12.5
Merged-chr5-35693800-4	chr5	35693304	35694304	+	876.054199	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14024.0	NM_030127	78558.0	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31494147-4	chr14	31493658	31494658	+	876.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028932)	promoter-TSS (NM_028932)	600.0	NM_001359850	67011.0	Mm.291731	NM_025907	ENSMUSG00000021891	Mettl6	1600013P15Rik|AI467521|AU020711	methyltransferase like 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106491620-4	chr11	106491113	106492113	+	876.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3817.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20370976-4	chr14	20370485	20371485	+	876.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024512, intron 7 of 13)	PB1D10|SINE|Alu	17925.0	NM_134081	108671.0	Mm.2871	NM_134081	ENSMUSG00000021811	Dnajc9	5330419I01Rik|AU020082	DnaJ heat shock protein family (Hsp40) member C9	protein-coding	0.0	0.5	0.0	1.0	0.5	0.0
Merged-chr5-123848274-4	chr5	123847672	123848672	+	876.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17344.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	51.0	70.5	62.0	12.5	5.5	11.0
Merged-chr15-59795886-4	chr15	59795391	59796391	+	876.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045076)	promoter-TSS (NR_045076)	-932.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.5	0.5	0.0	1.0	1.0	1.5
Merged-chr1-134196015-2	chr1	134195515	134196515	+	876.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357515, intron 3 of 10)	intron (NM_001357515, intron 3 of 10)	2567.0	NM_016749	53311.0	Mm.379067	NM_016749	ENSMUSG00000042451	Mybph	AI385643|MyBP-H	myosin binding protein H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72250402-3	chr5	72249904	72250904	+	876.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 9 of 22)	intron (NR_003966, intron 9 of 22)	47061.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127932944-2	chr7	127932444	127933444	+	876.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001319147, exon 15 of 15)	exon (NM_001319147, exon 15 of 15)	-2831.0	NM_133351	76560.0	Mm.5875	NM_133351	ENSMUSG00000030800	Prss8	2410039E18Rik|AI313909|C79772|CAP1|fr|mCAP1	protease, serine 8 (prostasin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122891993-2	chr14	122891493	122892493	+	876.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145466, intron 2 of 2)	intron (NM_145466, intron 2 of 2)	-21037.0	NR_155287	105245866.0	Mm.390754	NM_001039531	ENSMUSG00000075463	Gm15735	4930594M22Rik|F930011C10Rik	predicted gene 15735	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-10495053-2	chr7	10494553	10495553	+	876.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009577, intron 1 of 3)	intron (NM_009577, intron 1 of 3)	328.0	NM_009577	22775.0	Mm.49441	NM_009577	ENSMUSG00000030393	Zik1	-	zinc finger protein interacting with K protein 1	protein-coding	0.0	0.5	2.5	0.0	8.0	1.5
Merged-chr9-32695330-2	chr9	32694830	32695830	+	876.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011808)	promoter-TSS (NM_011808)	-712.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	1.5	4.5	3.0	0.0	0.0	5.0
Merged-chr2-163646457-2	chr2	163645957	163646957	+	876.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_028113)	TTS (NR_028113)	-1314.0	NM_012032	26943.0	Mm.218473	NM_012032	ENSMUSG00000017707	Serinc3	AA959945|AA960047|AIGP1|DIFF33|TMS-1|Tde1	serine incorporator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-32339365-2	chr13	32338865	32339865	+	876.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146041)	promoter-TSS (NM_146041)	-821.0	NM_146041	218138.0	Mm.247143	NM_146041	ENSMUSG00000038372	Gmds	BC031788|C87208	GDP-mannose 4, 6-dehydratase	protein-coding	27.0	79.0	56.0	37.0	51.0	65.0
Merged-chr5-124351335-3	chr5	124350839	124351839	+	876.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013812, intron 1 of 3)	intron (NM_013812, intron 1 of 3)	3289.0	NM_013812	13445.0	Mm.391838	NM_013812	ENSMUSG00000029394	Cdk2ap1	Apc10|Cdkap1|DORC1|Doc1|ST19|doc-1|p12	CDK2 (cyclin-dependent kinase 2)-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171112014-3	chr1	171111546	171112546	+	876.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9615.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	67.5	127.5	127.0	33.0	89.5	78.0
Merged-chr8-5538007-2	chr8	5537507	5538507	+	876.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-432720.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-53496055-3	chr7	53495550	53496550	+	876.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	395839.0	NR_105746	102466619.0		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-101975210-2	chr12	101974710	101975710	+	876.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016856)	promoter-TSS (NM_016856)	-764.0	NM_016856	51786.0	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	36.0	131.5	81.0	69.0	103.5	85.5
Merged-chr1-119495201-4	chr1	119494764	119495764	+	876.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022327, intron 1 of 4)	intron (NM_022327, intron 1 of 4)	9518.0	NM_022327	64143.0	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47396440-3	chr14	47395924	47396924	+	876.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144553, intron 13 of 18)	intron (NM_144553, intron 13 of 18)	21983.0	NM_144553	218977.0	Mm.240543	NM_144553	ENSMUSG00000037544	Dlgap5	C77459|C86398|Dap-5|Dlg7|Hurp|mKIAA0008	DLG associated protein 5	protein-coding	10.5	15.0	6.5	19.0	31.5	34.0
Merged-chr19-11929794-3	chr19	11929293	11930293	+	876.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172635, intron 9 of 18)	intron (NM_172635, intron 9 of 18)	6065.0	NR_105960	102465601.0		NR_105960	ENSMUSG00000104979	Mir6994	mmu-mir-6994	microRNA 6994	ncRNA	42.5	35.0	19.0	7.5	11.5	5.0
Merged-chr5-121409073-4	chr5	121408568	121409568	+	876.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172722, intron 3 of 23)	intron (NM_172722, intron 3 of 23)	11086.0	NM_172722	231713.0	Mm.33919	NM_172722	ENSMUSG00000042719	Naa25	4833422K13Rik|A630046C11|AI450868|C330023M02Rik|Mdm20	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding	1.0	5.5	9.5	0.0	2.5	12.0
Merged-chr1-192138662-3	chr1	192138168	192139168	+	876.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144814)	promoter-TSS (NM_144814)	-628.0	NM_001290282	214742.0	Mm.207457	NM_144814	ENSMUSG00000037395	Rcor3	4921514E24Rik|C730034D20Rik|E130101E15Rik	REST corepressor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61231552-4	chr11	61231050	61232050	+	876.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138545, intron 9 of 10)	intron (NR_138545, intron 9 of 10)	22808.0	NM_001331112	11670.0	Mm.4257	NM_007436	ENSMUSG00000019102	Aldh3a1	Ahd-4|Ahd4|Aldh|Aldh3	aldehyde dehydrogenase family 3, subfamily A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76293897-2	chr16	76293397	76294397	+	876.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_173440, exon 4 of 4)	exon (NM_173440, exon 4 of 4)	79152.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94546136-2	chr11	94545636	94546636	+	876.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013381, intron 3 of 8)	B1F2|SINE|Alu	3071.0	NM_001013381	237926.0	Mm.342275	NM_001013381	ENSMUSG00000039096	Rsad1	B430319G23|BC056485	radical S-adenosyl methionine domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-92458632-2	chr2	92458132	92459132	+	876.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_211358, intron 1 of 1)	intron (NM_211358, intron 1 of 1)	1162.0	NM_211358	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-43579229-2	chr16	43578729	43579729	+	876.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 5 of 6)	intron (NM_181058, intron 5 of 6)	-61426.0	NR_030576	100124467.0		NR_030576	ENSMUSG00000076372	Mir568	Mirn568|mmu-mir-568	microRNA 568	ncRNA	0.0	4.5	1.0	0.0	3.0	0.0
Merged-chr11-77214455-3	chr11	77213962	77214962	+	876.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-1963.0	NM_177710	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171634088-1	chr1	171633588	171634588	+	876.0	f1_balb.idr	3' UTR (NM_144539, exon 8 of 8)	3' UTR (NM_144539, exon 8 of 8)	7812.0	NR_106151	102465784.0		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	4.0	28.0	14.0	2.5	24.5	11.0
Merged-chr8-27192410-3	chr8	27191908	27192908	+	876.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10139.0	NM_029674	76615.0	Mm.272794	NM_029674	ENSMUSG00000039720	Got1l1	1700083M11Rik	glutamic-oxaloacetic transaminase 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-63753532-4	chr7	63753024	63754024	+	876.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130880, intron 11 of 13)	intron (NM_130880, intron 11 of 13)	-163333.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-109530125-3	chr12	109529623	109530623	+	876.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10873.0	NR_027652	17263.0	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	7.0	2.0	0.5	7.0	2.5	0.5
Merged-chr7-4938682-4	chr7	4938264	4939264	+	876.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173008, intron 12 of 13)	B3|SINE|B2	12920.0	NM_173008	269855.0	Mm.44190	NM_173008	ENSMUSG00000035279	Ssc5d	A430110N23Rik|S5D-SRCRB	scavenger receptor cysteine rich family, 5 domains	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25577795-2	chr2	25577295	25578295	+	876.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001005424, exon 1 of 1)	exon (NM_001005424, exon 1 of 1)	2304.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102389587-2	chr12	102389087	102390087	+	876.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 9 of 9)	intron (NM_177620, intron 9 of 9)	50226.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-148792752-2	chr3	148792252	148793252	+	876.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	161883.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88760736-3	chr15	88760222	88761222	+	876.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181412, intron 2 of 2)	B2_Mm1a|SINE|B2	9011.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94850150-2	chr10	94849650	94850650	+	876.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 10 of 30)	intron (NM_018797, intron 10 of 30)	94428.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128394618-1	chr2	128394118	128395118	+	876.0	f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	34733.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0.0	9.5	0.5	4.0	1.5	6.0
Merged-chr7-67243019-3	chr7	67242527	67243527	+	876.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291195, intron 8 of 10)	intron (NM_001291195, intron 8 of 10)	20411.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-84822614-2	chr11	84822114	84823114	+	876.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177564, intron 3 of 6)	intron (NM_177564, intron 3 of 6)	-3099.0	NM_145433	217038.0	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik	mitochondrial rRNA methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85230789-2	chr12	85230289	85231289	+	876.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11308.0	NM_145445	217715.0	Mm.29041	NM_145445	ENSMUSG00000004788	Eif2b2	EIF-2Bbeta|EIF2B	eukaryotic translation initiation factor 2B, subunit 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77417207-3	chr10	77416685	77417685	+	876.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024838, intron 1 of 11)	intron (NM_001024838, intron 1 of 11)	1088.0	NM_130895	110532.0	Mm.276815	NM_130895	ENSMUSG00000020262	Adarb1	1700057H01Rik|AW124433|AW558573|Adar2|BB220382|D10Bwg0447e|Red1	adenosine deaminase, RNA-specific, B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117818190-2	chr10	117817690	117818690	+	876.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 6 of 7)	B1_Mm|SINE|Alu	-25485.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-63917315-2	chr7	63916815	63917815	+	875.9833369999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001256311, intron 1 of 2)	ORR1C1|LTR|ERVL-MaLR	458.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	7.0	10.0	11.5	9.5	16.0	12.0
Merged-chr19-33109290-4	chr19	33108800	33109800	+	875.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-47812.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-123259946-3	chr6	123259442	123260442	+	875.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2165.0	NM_001163161	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122945035-3	chr6	122944536	122945536	+	875.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-7479.0	NM_001204241	73149.0	Mm.25684	NM_153197	ENSMUSG00000043832	Clec4a3	3110037K17Rik|Dcir3	C-type lectin domain family 4, member a3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-113026261-3	chr9	113025766	113026766	+	875.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	560886.0	NR_040760	102688.0	Mm.394901	NR_040760	ENSMUSG00000109890	AU023762	-	expressed sequence AU023762	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37540827-4	chr9	37540316	37541316	+	875.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020518, intron 3 of 6)	intron (NM_020518, intron 3 of 6)	1561.0	NM_020518	57276.0	Mm.27478	NM_020518	ENSMUSG00000001943	Vsig2	1190004B15Rik|2210413P10Rik|AU040484|CTX|Ctm	V-set and immunoglobulin domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96525294-4	chr9	96524803	96525803	+	875.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46628.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-51028856-4	chr9	51028351	51029351	+	875.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19778.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30554055-4	chr2	30553549	30554549	+	875.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	-40995.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-137922921-4	chr1	137922417	137923417	+	875.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43538.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-58770950-3	chr6	58770453	58771453	+	875.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60512.0	NM_001361967	73998.0	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-23146769-3	chr19	23146289	23147289	+	875.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010638, intron 1 of 1)	intron (NM_010638, intron 1 of 1)	-2642.0	NR_035423	100316672.0		NR_035423	ENSMUSG00000080626	Mir1192	Mirn1192|mmu-mir-1192	microRNA 1192	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127334615-2	chr2	127334115	127335115	+	875.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1544.0	NM_010090	13537.0	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129575441-4	chr4	129575000	129576000	+	875.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1859.0	NM_001162433	16818.0	Mm.293753	NM_010693	ENSMUSG00000000409	Lck	Hck-3|Lsk|Lskt|p56<lck>|p56Lck	lymphocyte protein tyrosine kinase	protein-coding	5.0	10.0	1.0	1.5	7.5	3.0
Merged-chr17-17739279-4	chr17	17738793	17739793	+	875.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR9E|LTR|ERVK	35352.0	NM_001104539	626942.0	Mm.404019	NM_001104539	ENSMUSG00000092120	Vmn2r90	EG626942	vomeronasal 2, receptor 90	protein-coding	0.0	0.0	2.0	0.0	3.0	0.5
Merged-chr10-127664324-2	chr10	127663824	127664824	+	875.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001122895, exon 2 of 6)	exon (NM_001122895, exon 2 of 6)	2379.0	NM_001122895	17937.0	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96697115-4	chr15	96696623	96697623	+	875.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355633, intron 3 of 14)	intron (NM_001355633, intron 3 of 14)	2605.0	NM_001355633	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34847205-4	chr19	34846728	34847728	+	875.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114339, intron 1 of 6)	URR1A|DNA|hAT-Charlie	-26455.0	NR_029783	723826.0		NR_029783	ENSMUSG00000065594	Mir107	Mirn107|mir-107|mmu-mir-107	microRNA 107	ncRNA	5.5	6.0	4.5	0.0	2.5	3.5
Merged-chr6-51919193-4	chr6	51918699	51919699	+	875.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018773, intron 6 of 12)	intron (NM_018773, intron 6 of 12)	93350.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138250214-3	chr4	138249751	138250751	+	875.81665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001099631)	promoter-TSS (NM_001099631)	-160.0	NM_001099631	230863.0	Mm.482408	NM_001099631	ENSMUSG00000045349	Sh2d5	BC036961	SH2 domain containing 5	protein-coding	1.0	6.5	3.5	1.5	0.0	0.0
Merged-chr17-70833655-4	chr17	70833192	70834192	+	875.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13085.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-41057440-5	chr8	41056907	41057907	+	875.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 3 of 13)	intron (NM_001005863, intron 3 of 13)	-2611.0	NM_001005864	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	3.5	6.0	12.5	15.0	10.0	4.5
Merged-chr5-96244723-4	chr5	96244226	96245226	+	875.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053158, intron 7 of 8)	L1ME1|LINE|L1	34611.0	NM_053158	94061.0	Mm.295499	NM_053158	ENSMUSG00000029486	Mrpl1	2410002L03Rik|5830418D04Rik|AI462572|L1mt	mitochondrial ribosomal protein L1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105275353-4	chr4	105274854	105275854	+	875.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	118007.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.0	0.0	0.5	0.0	0.0	1.0
Merged-chr7-81850400-3	chr7	81849892	81850892	+	875.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8609.0	NR_111910	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	81.0	224.5	144.5	66.0	175.0	157.0
Merged-chr14-101560814-4	chr14	101560324	101561324	+	875.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	48367.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60178617-4	chr13	60178104	60179104	+	875.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1069.0	NM_008086	14451.0	Mm.22701	NM_008086	ENSMUSG00000052957	Gas1	AW554192|Gas-1	growth arrest specific 1	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr12-35824705-4	chr12	35824225	35825225	+	875.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100896.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr1-91282750-3	chr1	91282248	91283248	+	875.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355764, intron 9 of 10)	intron (NM_001355764, intron 9 of 10)	-15590.0	NM_016717	50880.0	Mm.25724	NM_016717	ENSMUSG00000026307	Scly	9830169H08|A930015N15Rik|SCL|Scly1|Scly2	selenocysteine lyase	protein-coding	6.5	5.0	10.5	0.0	1.0	4.0
Merged-chr13-52194631-4	chr13	52194119	52195119	+	875.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	97878.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152674032-4	chr1	152673535	152674535	+	875.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346118, intron 2 of 18)	intron (NM_001346118, intron 2 of 18)	-48818.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-58551998-4	chr4	58551511	58552511	+	875.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010336, intron 1 of 3)	intron (NM_010336, intron 1 of 3)	1282.0	NM_172989	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0.0	14.0	2.5	0.0	3.0	2.0
Merged-chr9-59548055-4	chr9	59547529	59548529	+	875.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010421, intron 1 of 13)	L2c|LINE|L2	8489.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-17060191-4	chr7	17059709	17060709	+	875.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162950, intron 1 of 14)	intron (NM_001162950, intron 1 of 14)	2218.0	NM_001162950	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	0.5	10.0	9.0	0.0	11.0	14.0
Merged-chr16-44725078-4	chr16	44724560	44725560	+	875.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145972, intron 1 of 8)	intron (NM_145972, intron 1 of 8)	759.0	NM_145972	212547.0	Mm.310573	NM_145972	ENSMUSG00000036208	Nepro	-	nucleolus and neural progenitor protein	protein-coding	2.5	6.0	11.5	14.0	33.0	23.0
Merged-chr10-11319746-3	chr10	11319235	11320235	+	875.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23710.0	NM_010146	13853.0	Mm.89946	NM_010146	ENSMUSG00000055493	Epm2a	TG-B|Tg(TcraK,TcrbK)TG-BFlv	epilepsy, progressive myoclonic epilepsy, type 2 gene alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119970814-3	chr2	119970342	119971342	+	875.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1857.0	NM_001355293	26390.0	Mm.330501	NM_011941	ENSMUSG00000033902	Mapkbp1	2810483F24Rik|AW123212|JNKBP-1|Jnkbp1|mKIAA0596	mitogen-activated protein kinase binding protein 1	protein-coding	0.0	4.5	0.0	3.5	1.5	0.0
Merged-chr2-163760766-3	chr2	163760220	163761220	+	875.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10481.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	56.5	96.0	69.5	59.0	130.5	116.5
Merged-chr3-116860552-4	chr3	116860052	116861052	+	875.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113478, intron 1 of 16)	intron (NM_001113478, intron 1 of 16)	985.0	NM_001113478	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	13.0	16.5	1.5	4.0	3.5	3.5
Merged-chr12-117385895-4	chr12	117385393	117386393	+	875.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48881.0	NR_044987	432713.0	Mm.459210	NR_044987	ENSMUSG00000101930	Gm5441	-	predicted gene 5441	ncRNA	7.5	0.0	1.0	0.0	0.5	0.0
Merged-chr17-50121231-5	chr17	50120675	50121675	+	875.6966550000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	69322.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	3.5	5.0	7.0	0.0	6.0	4.5
Merged-chr9-110281318-4	chr9	110280818	110281818	+	875.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105744)	promoter-TSS (NR_105744)	31.0	NR_105744	102465959.0		NR_105744	ENSMUSG00000098973	Mir6236	Gm27547|mmu-mir-6236	microRNA 6236	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45270764-3	chr2	45270264	45271264	+	875.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-153322.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170884944-3	chr1	170884402	170885402	+	875.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151477, intron 1 of 4)	intron (NR_151477, intron 1 of 4)	638.0	NR_151476	80915.0	Mm.34365	NM_023173	ENSMUSG00000026659	Dusp12	1190004O14Rik|AA027408|AW049275|ESTM36|LMW-DSP4|T-DSP4|VH1|mVH1	dual specificity phosphatase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131955423-3	chr2	131954950	131955950	+	875.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001278520, exon 3 of 3)	3' UTR (NM_001278520, exon 3 of 3)	4413.0	NM_001278520	26434.0	Mm.180750	NM_023043	ENSMUSG00000027338	Prnd	AI450264|Dpl|PrPLP|doppel	prion like protein doppel	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42990133-3	chr10	42989611	42990611	+	875.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153349, intron 1 of 2)	B3|SINE|B2	1051.0	NR_153349	327749.0	Mm.428887	NR_153349		Gm5079	C230040G06	predicted gene 5079	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47687572-3	chr17	47687071	47688071	+	875.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045945)	promoter-TSS (NR_045945)	-39.0	NR_045945	100415787.0	Mm.392206	NR_045945	ENSMUSG00000084880	Tomm6os	Gm14872|Prickle4os	translocase of outer mitochondrial membrane 6, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61668194-3	chr14	61667689	61668689	+	875.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	14184.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11411744-3	chr19	11411251	11412251	+	875.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029499, intron 1 of 6)	intron (NM_029499, intron 1 of 6)	4090.0	NM_029499	64380.0	Mm.440715	NM_029499	ENSMUSG00000024675	Ms4a4c	5830413L19Rik|AI449185|Ms4a9	membrane-spanning 4-domains, subfamily A, member 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13504114-1	chr8	13503614	13504614	+	875.6666869999999	f0_c57.idr	Intergenic	Intergenic	-9579.0	NM_019521	14456.0	Mm.3982	NM_019521	ENSMUSG00000031451	Gas6	Gas-6	growth arrest specific 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-51694255-3	chr12	51693788	51694788	+	875.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001329698, intron 1 of 5)	intron (NM_001329698, intron 1 of 5)	-2374.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34234206-3	chr10	34233689	34234689	+	875.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-26638.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140798414-3	chr5	140797914	140798914	+	875.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 1 of 3)	ID|SINE|ID	32017.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135964589-2	chr5	135964089	135965089	+	875.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160366, intron 7 of 10)	intron (NM_001160366, intron 7 of 10)	9887.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	0.0	0.0	0.0	0.0	2.5	0.0
Merged-chr5-139449292-4	chr5	139448807	139449807	+	875.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	11227.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19344556-2	chr7	19344056	19345056	+	875.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007948)	promoter-TSS (NM_007948)	-515.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0.0	2.0	0.5	0.0	1.5	0.0
Merged-chr7-88280265-4	chr7	88279795	88280795	+	875.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009982, intron 1 of 6)	intron (NM_009982, intron 1 of 6)	2210.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-142085067-6	chr4	142084395	142085395	+	875.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145402)	promoter-TSS (NM_145402)	-591.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64718997-4	chr5	64718488	64719488	+	875.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84535.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	22.5	32.5	40.5	26.0	37.0	38.5
Merged-chr11-53436553-4	chr11	53436093	53437093	+	875.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008110, intron 1 of 1)	intron (NM_008110, intron 1 of 1)	3307.0	NM_008110	14566.0	Mm.9714	NM_008110	ENSMUSG00000018238	Gdf9	Gdf-9	growth differentiation factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43454254-4	chr4	43453757	43454757	+	875.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007654, exon 2 of 9)	exon (NM_007654, exon 2 of 9)	369.0	NM_001110320	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60745602-4	chr18	60745111	60746111	+	875.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	1135.0	NM_001348101	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118537445-4	chr2	118536942	118537942	+	875.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331221, intron 3 of 3)	intron (NM_001331221, intron 3 of 3)	7145.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	16.5	36.0	28.0	1.5	18.5	15.5
Merged-chr15-25563896-4	chr15	25563392	25564392	+	875.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58658.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-65389888-4	chr14	65389394	65390394	+	875.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199029, intron 4 of 9)	intron (NM_199029, intron 4 of 9)	31218.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	6.0	0.0	1.0	6.0	0.0	1.0
Merged-chr7-101836777-4	chr7	101836285	101837285	+	875.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001122739, exon 2 of 29)	5' UTR (NM_001122739, exon 2 of 29)	1039.0	NM_001122739	16332.0	Mm.476000	NM_010567	ENSMUSG00000032737	Inppl1	51C|SHIP2	inositol polyphosphate phosphatase-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-13279189-3	chr2	13278633	13279633	+	875.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081084, intron 65 of 66)	intron (NM_001081084, intron 65 of 66)	-7718.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152838252-4	chr1	152837790	152838790	+	875.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001359257, exon 24 of 24)	3' UTR (NM_001359257, exon 24 of 24)	38137.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117949822-4	chr11	117949264	117950264	+	875.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	19602.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122099314-4	chr7	122098801	122099801	+	875.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153798, intron 1 of 3)	intron (NR_153798, intron 1 of 3)	2547.0	NR_153798	70316.0	Mm.3014	NM_028177	ENSMUSG00000030869	Ndufab1	2210401F17Rik|2310039H15Rik|2610003B19Rik|8kDa|9130423F15Rik|ACP|CI-SDAP|SDAP	NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88771611-4	chr3	88771081	88772081	+	875.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018804, intron 1 of 3)	intron (NM_018804, intron 1 of 3)	1018.0	NM_018804	229521.0	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	0.0	0.0	1.0	16.0	26.0	35.0
Merged-chr2-27319491-2	chr2	27318991	27319991	+	875.583374	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 2 of 29)	intron (NR_133905, intron 2 of 29)	-72188.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43393424-4	chr5	43392897	43393897	+	875.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122172.0	NM_001135172	109323.0	Mm.275553	NM_175425	ENSMUSG00000061535	C1qtnf7	5530401N20Rik|8430425G24Rik|Ctrp7	C1q and tumor necrosis factor related protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33191814-3	chr16	33191287	33192287	+	875.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176840, intron 1 of 12)	LTR40a|LTR|ERVL	6716.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54824883-4	chr13	54824384	54825384	+	875.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35479.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	3.0	12.5	8.5	2.5	5.5	11.0
Merged-chr3-105841747-4	chr3	105841254	105842254	+	875.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	26187.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-19889795-4	chr14	19889298	19890298	+	875.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038637, intron 4 of 4)	intron (NM_001038637, intron 4 of 4)	50873.0	NR_105025	52512.0	Mm.483998	NR_105025	ENSMUSG00000114350	D14Ertd670e	-	DNA segment, Chr 14, ERATO Doi 670, expressed	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31627496-4	chr15	31627015	31628015	+	875.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25399.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-83951429-2	chr12	83950929	83951929	+	875.5625	f1_balb.idr|f1_c57bl6.idr	exon (NM_023633, exon 1 of 1)	exon (NM_023633, exon 1 of 1)	821.0	NM_023633	71952.0	Mm.251483	NM_023633	ENSMUSG00000046791	Riox1	2410016O06Rik|MAPJD|NO66	ribosomal oxygenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26955756-3	chr17	26955253	26956253	+	875.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281491, intron 7 of 18)	intron (NM_001281491, intron 7 of 18)	-7634.0	NR_037244	100526534.0		NR_037244	ENSMUSG00000093118	Mir3083	mir-3083|mmu-mir-3083	microRNA 3083	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105605760-3	chr8	105605252	105606252	+	875.533325	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081241, intron 1 of 21)	intron (NM_001081241, intron 1 of 21)	523.0	NM_001081241	75687.0	Mm.41261	NM_001081241	ENSMUSG00000038604	Ripor1	2310066E14Rik|AI837433|Fam65a	RHO family interacting cell polarization regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128805332-4	chr6	128804860	128805860	+	875.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-16719.0	NM_008527	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	0.0	0.0	0.0	1.0	5.0	1.0
Merged-chr1-9891853-1	chr1	9891353	9892353	+	875.5	f1_c57bl6.idr	intron (NM_133220, intron 17 of 17)	(TG)n|Simple_repeat|Simple_repeat	-16785.0	NM_177722	240697.0	Mm.259800	NM_177722	ENSMUSG00000046101	Mcmdc2	6030422M02Rik	minichromosome maintenance domain containing 2	protein-coding	32.0	21.0	10.5	7.5	48.0	17.5
Merged-chr19-21033505-2	chr19	21032998	21033998	+	875.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71212.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	10.0	29.5	21.5	7.0	21.5	10.0
Merged-chr17-62544408-4	chr17	62543917	62544917	+	875.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	336900.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135961971-2	chr5	135961471	135962471	+	875.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160366, intron 9 of 10)	intron (NM_001160366, intron 9 of 10)	12505.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	24.0	124.5	68.5	27.5	120.5	57.5
Merged-chr1-170292597-2	chr1	170292097	170293097	+	875.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13735.0	NM_001198955	665574.0	Mm.65316	NM_001198955	ENSMUSG00000102752	Gm7694	EG665574	predicted gene 7694	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126663767-2	chr8	126663304	126664304	+	875.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70368.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	7.0	2.0	11.0	4.5	0.0	5.0
Merged-chr7-49006116-2	chr7	49005616	49006616	+	875.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	47043.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-38059069-2	chr11	38058569	38059569	+	875.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	400080.0	NR_131154	100039148.0	Mm.120467	NR_131154	ENSMUSG00000087388	Gm12128	-	predicted gene 12128	ncRNA	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr2-132104238-2	chr2	132103738	132104738	+	875.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	B3A|SINE|B2	40870.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93611804-2	chr1	93611304	93612304	+	875.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145519, intron 19 of 26)	intron (NM_145519, intron 19 of 26)	23923.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	0.0	0.0	3.5	0.0	0.5	0.5
Merged-chr3-15345781-4	chr3	15345273	15346273	+	875.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13471.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180964225-4	chr2	180963728	180964728	+	875.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2997.0	NM_145760	228998.0	Mm.33765	NM_145760	ENSMUSG00000027575	Arfgap1	AI115377|Arf1gap	ADP-ribosylation factor GTPase activating protein 1	protein-coding	5.0	0.0	2.0	0.0	0.0	0.0
Merged-chr12-84873814-2	chr12	84873314	84874314	+	875.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013589, intron 1 of 34)	intron (NM_013589, intron 1 of 34)	-1988.0	NR_028577	100303738.0	Mm.479389	NR_028577	ENSMUSG00000092130	D030025P21Rik	-	RIKEN cDNA D030025P21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59978296-2	chr2	59977796	59978796	+	875.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 5 of 35)	intron (NM_001001182, intron 5 of 35)	-95690.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90074337-2	chr2	90073837	90074837	+	875.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22015.0	NM_020515	57272.0	Mm.330390	NM_020515	ENSMUSG00000075068	Olfr140	A16|MOR235-1|Ora16	olfactory receptor 140	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6444941-2	chr4	6444439	6445439	+	875.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 1 of 30)	(TG)n|Simple_repeat|Simple_repeat	9332.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0.5	2.0	0.0	0.0	0.0	0.0
Merged-chr4-46606794-2	chr4	46606294	46607294	+	875.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198664, intron 11 of 12)	intron (NM_198664, intron 11 of 12)	-4865.0	NM_001164804	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	0.0	0.0	0.5	0.0	0.0	1.0
Merged-chr11-119946285-2	chr11	119945782	119946782	+	875.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037754, intron 1 of 13)	(TG)n|Simple_repeat|Simple_repeat	3190.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	1.5	0.0	0.0	0.5	0.0	0.0
Merged-chr2-165920500-2	chr2	165920000	165921000	+	875.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-35662.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	4.5	8.5	8.5	10.5	6.0	3.5
Merged-chr15-40952472-2	chr15	40951972	40952972	+	875.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356998, intron 3 of 6)	intron (NM_001356998, intron 3 of 6)	-221229.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-154305613-4	chr3	154305129	154306129	+	875.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010713)	TTS (NM_010713)	24931.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-138512669-2	chr3	138512169	138513169	+	875.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13522.0	NM_007917	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	2.5	0.0	3.0	2.5	0.0	3.0
Merged-chr4-86679967-1	chr4	86679467	86680467	+	875.5	f0_balb.idr	Intergenic	Intergenic	-9908.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	1.0	5.5	0.0	1.5	5.5	0.0
Merged-chr1-171839709-4	chr1	171839198	171840198	+	875.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252472)	promoter-TSS (NM_001252472)	1.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	3.0	29.5	13.0	64.5	130.0	78.0
Merged-chr17-35825295-4	chr17	35824807	35825807	+	875.4583130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008027, intron 6 of 12)	intron (NM_008027, intron 6 of 12)	1950.0	NM_008027	14251.0	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	0.0	15.5	0.5	0.0	12.5	0.0
Merged-chr3-96223111-4	chr3	96222598	96223598	+	875.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178214, exon 1 of 1)	3' UTR (NM_178214, exon 1 of 1)	2026.0	NM_178214	319190.0	Mm.439791	NM_178214	ENSMUSG00000068854	Hist2h2be	AV127319|H2b-613|T25626	histone cluster 2, H2be	protein-coding	4.0	6.0	3.0	6.5	19.5	2.0
Merged-chr15-37135799-3	chr15	37135303	37136303	+	875.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-97233.0	NM_026496	252973.0	Mm.244612	NM_026496	ENSMUSG00000022286	Grhl2	0610015A08Rik|BOM|Tcfcp2l3|clft3	grainyhead like transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135870696-4	chr5	135870192	135871192	+	875.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021403, intron 14 of 14)	URR1A|DNA|hAT-Charlie	-17227.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	2.5	4.0	1.0	0.0	2.5	0.0
Merged-chr15-59722609-3	chr15	59722078	59723078	+	875.4285890000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72381.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79664162-3	chr10	79663664	79664664	+	875.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013591)	promoter-TSS (NM_013591)	-395.0	NM_013591	17123.0	Mm.391556	NM_013591	ENSMUSG00000020310	Madcam1	AV211525|MAdCAM-1	mucosal vascular addressin cell adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45104553-6	chr2	45104167	45105167	+	875.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	5610.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59522258-4	chr2	59521761	59522761	+	875.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37608.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-23826567-4	chr5	23826084	23827084	+	875.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	17561.0	NM_025394	66169.0	Mm.291868	NM_025394	ENSMUSG00000028998	Tomm7	1110020J08Rik|AW047273|Tom7	translocase of outer mitochondrial membrane 7	protein-coding	0.5	2.0	0.0	5.5	6.5	6.0
Merged-chr2-167230319-3	chr2	167229812	167230812	+	875.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008968, intron 1 of 9)	L1MB5|LINE|L1	10225.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-109056646-6	chr9	109056263	109057263	+	875.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026381, exon 4 of 4)	3' UTR (NM_026381, exon 4 of 4)	1897.0	NM_026381	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109280871-4	chr4	109280371	109281371	+	875.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007943, intron 1 of 24)	CpG	596.0	NM_007943	13858.0	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-51695085-4	chr12	51694520	51695520	+	875.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001329698, intron 1 of 5)	intron (NM_001329698, intron 1 of 5)	-3106.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3719204-4	chr19	3718711	3719711	+	875.354126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10800.0	NM_001358257	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45630208-6	chr17	45629763	45630763	+	875.3472289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001013767)	TTS (NM_001013767)	-28161.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	0.0	0.5	1.0	2.0	0.0	0.0
Merged-chr11-33148245-9	chr11	33147709	33148709	+	875.3463130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102395)	promoter-TSS (NR_102395)	-809.0	NR_102395	14172.0	Mm.339812	NM_008005	ENSMUSG00000057967	Fgf18	D130055P09Rik|FGF-18	fibroblast growth factor 18	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr10-37386398-4	chr10	37385894	37386894	+	875.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-247468.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122812322-2	chr6	122811822	122812822	+	875.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-7862.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91487540-2	chr2	91487040	91488040	+	875.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 19 of 37)	B2_Mm2|SINE|B2	30009.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117332391-4	chr11	117331875	117332875	+	875.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113488)	promoter-TSS (NM_001113488)	62.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-28321911-4	chr5	28321420	28322420	+	875.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028234, intron 1 of 18)	intron (NM_028234, intron 1 of 18)	4731.0	NM_028234	381626.0	Mm.304075	NM_028234	ENSMUSG00000048271	Rbm33	3200001K10Rik|6430512A10Rik|AA386890|Prr8	RNA binding motif protein 33	protein-coding	4.5	3.5	0.0	0.0	2.5	0.0
Merged-chr9-65676025-3	chr9	65675530	65676530	+	875.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010952)	promoter-TSS (NM_010952)	-518.0	NM_010952	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	20.5	46.0	28.0	22.5	37.5	16.0
Merged-chr16-21192798-3	chr16	21192281	21193281	+	875.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12014.0	NM_010143	13845.0	Mm.6972	NM_010143	ENSMUSG00000005958	Ephb3	AW456895|Cek10|Etk2|HEK2|MDK5|Sek4|Tyro6	Eph receptor B3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84514356-3	chr10	84513871	84514871	+	875.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19517.0	NM_175451	216197.0	Mm.334999	NM_175451	ENSMUSG00000046841	Ckap4	5630400A09Rik|CLIMP-63|P63	cytoskeleton-associated protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4973176-3	chr12	4972682	4973682	+	875.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362349, intron 15 of 27)	intron (NM_001362349, intron 15 of 27)	55829.0	NM_001362349	320817.0	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-36571543-3	chr3	36571045	36572045	+	875.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009828, intron 2 of 8)	CpG	1493.0	NM_009828	12428.0	Mm.4189	NM_009828	ENSMUSG00000027715	Ccna2	AA408589|Ccn-1|Ccn1|Ccna|CycA2|Cyca	cyclin A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14184556-3	chr2	14184061	14185061	+	875.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081310, intron 1 of 3)	intron (NM_001081310, intron 1 of 3)	10037.0	NM_001081310	625286.0	Mm.158781	NM_001081310	ENSMUSG00000061531	Tmem236	2010003H20Rik|Fam23a|Gm613	transmembrane protein 236	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-31007942-3	chr7	31007434	31008434	+	875.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26013.0	NM_001242647	76415.0	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117176568-3	chr11	117176060	117177060	+	875.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23101.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74811002-4	chr17	74810419	74811419	+	875.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152817, intron 13 of 19)	intron (NM_152817, intron 13 of 19)	93169.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	5.0	0.5	0.0	0.0	0.0	0.0
Merged-chr5-81078198-4	chr5	81077694	81078694	+	875.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198702, intron 2 of 27)	ORR1F|LTR|ERVL-MaLR	56601.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.0	0.0	1.5	0.0	7.5	1.0
Merged-chr7-100208027-4	chr7	100207500	100208500	+	875.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19607.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34193220-4	chr18	34192712	34193712	+	875.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27772.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	5.5	9.0	4.0	2.0	8.0	14.0
Merged-chr2-43806585-3	chr2	43806075	43807075	+	875.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 2 of 14)	intron (NM_001301831, intron 2 of 14)	57751.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40995780-3	chr19	40995270	40996270	+	875.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1235.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	4.5	9.0	8.0	0.0	6.5	2.0
Merged-chr17-34242360-2	chr17	34241861	34242861	+	875.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_010389, intron 2 of 5)	intron (NM_010389, intron 2 of 5)	3456.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	2.5	1.0	0.0	2.0	12.0	3.5
Merged-chr1-106697678-4	chr1	106697117	106698117	+	875.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	16673.0	NM_009741	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	0.0	0.0	0.0	1.5	0.0	0.0
Merged-chr2-165977015-4	chr2	165976532	165977532	+	875.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15605.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	47.5	94.0	53.5	33.0	73.0	48.5
Merged-chr2-167779005-2	chr2	167778505	167779505	+	875.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87828.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72587074-2	chr8	72586629	72587629	+	875.25	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151663, exon 3 of 3)	non-coding (NR_151663, exon 3 of 3)	15306.0	NM_001357279	74166.0	Mm.212927	NM_144534	ENSMUSG00000031791	Tmem38a	1110001E17Rik|AI413399|SPR-27|TRIC-A|mg33a	transmembrane protein 38A	protein-coding	20.5	30.0	24.0	4.5	13.0	11.5
Merged-chr2-136680013-1	chr2	136679513	136680513	+	875.25	f0_balb.idr	Intergenic	Intergenic	-33437.0	NM_011428	20614.0	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18884520-4	chr2	18884023	18885023	+	875.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355147, intron 3 of 8)	intron (NM_001355147, intron 3 of 8)	-82705.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-44215804-4	chr5	44215289	44216289	+	875.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173764, intron 2 of 13)	intron (NM_173764, intron 2 of 13)	10817.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-39173049-4	chr15	39172550	39173550	+	875.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR1_Mm|LTR|ERVK	-25236.0	NM_001256382	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126683732-3	chr8	126683231	126684231	+	875.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90295.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	16.5	2.0	0.0	0.0	0.0	0.0
Merged-chr19-55545740-4	chr19	55545242	55546242	+	875.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	156462.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110686995-4	chr12	110686492	110687492	+	875.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-4373.0	NM_025488	66323.0	Mm.273316	NM_025488	ENSMUSG00000056508	1700001K19Rik	-	RIKEN cDNA 1700001K19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99361961-4	chr5	99361486	99362486	+	875.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-109059.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100369173-3	chr11	100368662	100369662	+	875.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010593, exon 14 of 14)	3' UTR (NM_010593, exon 14 of 14)	-13021.0	NM_010404	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-54131890-3	chr10	54131394	54132394	+	875.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55972.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-12229759-2	chr12	12229279	12230279	+	875.166626	f0_balb.idr|f1_balb.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-32360.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	91.0	235.5	175.5	113.0	327.5	257.5
Merged-chr14-17413846-2	chr14	17413346	17414346	+	875.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-247114.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32717772-2	chr19	32717272	32718272	+	875.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-5474.0	NM_026487	67979.0	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-72376230-4	chr2	72375734	72376734	+	875.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 7 of 19)	(TG)n|Simple_repeat|Simple_repeat	90533.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-68436371-4	chr2	68435842	68436842	+	875.1354369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 1 of 17)	intron (NM_016866, intron 1 of 17)	35639.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118449250-4	chr11	118448717	118449717	+	875.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001204129, exon 4 of 4)	3' UTR (NM_001204129, exon 4 of 4)	5683.0	NM_001204130	56745.0	Mm.23845	NM_019959	ENSMUSG00000017446	C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19700546-2	chr7	19700046	19701046	+	875.125	f1_balb.idr|f1_c57bl6.idr	TTS (NM_016871)	TTS (NM_016871)	-1358.0	NM_009696	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99173127-3	chr7	99172651	99173651	+	875.1237789999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026384, intron 1 of 7)	intron (NM_026384, intron 1 of 7)	9562.0	NM_026384	67800.0	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	5.0	0.0	0.5	0.0	0.0	0.0
Merged-chr5-135007491-2	chr5	135006991	135007991	+	875.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-1661.0	NM_001190437	68758.0	Mm.389700	NM_145215	ENSMUSG00000040532	Abhd11	1110054D16Rik|A630008N09Rik|Wbscr21	abhydrolase domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4314012-2	chr12	4313512	4314512	+	875.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010881, intron 8 of 22)	MTC|LTR|ERVL-MaLR	79985.0	NM_001204912	69709.0	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-58865389-4	chr2	58864888	58865888	+	875.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 11 of 13)	RMER1B|Other|Other	110204.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139373018-4	chr5	139372522	139373522	+	875.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	-3277.0	NR_029768	723898.0		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126310077-3	chr4	126309576	126310576	+	875.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199473, intron 3 of 3)	intron (NM_199473, intron 3 of 3)	11627.0	NM_133883	100206.0	Mm.11285	NM_133883	ENSMUSG00000042558	Adprhl2	AI836109|Arh3	ADP-ribosylhydrolase like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18028761-4	chr2	18028272	18029272	+	875.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028378, exon 1 of 1)	non-coding (NR_028378, exon 1 of 1)	1523.0	NR_028378	100034739.0	Mm.401643	NR_028378		Gm17762	-	predicted gene, 17762	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4148474-3	chr7	4147974	4148974	+	875.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172736)	TTS (NM_172736)	1398.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130257574-2	chr5	130257074	130258074	+	875.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153350, intron 1 of 15)	B1F|SINE|Alu	537.0	NM_001015876	100929.0	Mm.271296	NM_178897	ENSMUSG00000056310	Tyw1	AW125391|Rsafd1	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152724147-3	chr2	152723649	152724649	+	875.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12102.0	NM_010495	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	0.0	0.0	1.5	7.5	1.0	3.0
Merged-chr2-118706824-2	chr2	118706364	118707364	+	875.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001290790)	TTS (NM_001290790)	-2901.0	NM_001081971	383787.0	Mm.35758	NM_001081971	ENSMUSG00000078137	Ankrd63	Gm1337	ankyrin repeat domain 63	protein-coding	0.0	1.5	5.0	1.0	0.0	0.0
Merged-chr5-118069620-2	chr5	118069120	118070120	+	875.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172721, intron 9 of 10)	intron (NM_172721, intron 9 of 10)	41877.0	NM_021344	57816.0	Mm.273285	NM_021344	ENSMUSG00000029359	Tesc	1010001A17Rik|2410011K10Rik|TE-1	tescalcin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84199740-2	chr8	84199240	84200240	+	875.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8778.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	6.0	44.0	19.5	1.0	34.5	5.0
Merged-chr1-87649046-5	chr1	87648599	87649599	+	875.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	28787.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127602363-2	chr10	127601863	127602863	+	875.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	ID_B1|SINE|B4	18785.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98711213-1	chr7	98710713	98711713	+	875.0	f0_balb.idr	intron (NM_001355114, intron 4 of 5)	intron (NM_001355114, intron 4 of 5)	7966.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71751537-1	chr8	71751037	71752037	+	875.0	f1_balb.idr	Intergenic	Intergenic	-25856.0	NM_028715	74015.0	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	7.0	22.0	12.0	2.0	4.5	3.5
Merged-chr9-65074900-2	chr9	65074400	65075400	+	875.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028906, intron 17 of 20)	L3b|LINE|CR1	-26586.0	NM_020043	56741.0	Mm.209041	NM_020043	ENSMUSG00000032816	Igdcc4	DDM36|Nope	immunoglobulin superfamily, DCC subclass, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93101635-2	chr1	93101135	93102135	+	875.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001294149, intron 1 of 47)	CpG	239.0	NM_001294149	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-143082456-2	chr2	143081956	143082956	+	875.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_020595)	TTS (NM_020595)	4063.0	NM_020595	57329.0	Mm.157751	NM_020595	ENSMUSG00000027416	Otor	CDRAP|Fdp|MIA|MIAL	otoraplin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-121180514-2	chr1	121180014	121181014	+	875.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93109.0	NR_110450	98452.0	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-50949693-4	chr13	50949199	50950199	+	875.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	151028.0	NR_029463	77428.0	Mm.405630	NR_029463		9430083A17Rik	-	RIKEN cDNA 9430083A17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94528097-2	chr16	94527597	94528597	+	875.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1468.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100572451-3	chr5	100571964	100572964	+	875.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139198)	promoter-TSS (NM_139198)	-259.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59162361-3	chr2	59161860	59162860	+	875.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	1510.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-78866992-2	chr2	78866492	78867492	+	875.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2055.0	NM_009454	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45307949-6	chr14	45307479	45308479	+	875.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015774, intron 1 of 15)	B1_Mur3|SINE|Alu	10593.0	NM_015774	50527.0	Mm.387108	NM_015774	ENSMUSG00000021831	Ero1l	ERO1-L|Ero1a	ERO1-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47836225-3	chr6	47835730	47836730	+	875.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173034, intron 1 of 4)	CpG	569.0	NM_173034	272347.0	Mm.169059	NM_027477	ENSMUSG00000062519	Zfp398	5730513I23Rik	zinc finger protein 398	protein-coding	17.5	30.0	32.5	9.5	41.5	12.5
Merged-chr14-34346419-2	chr14	34345919	34346919	+	875.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_027380)	TTS (NR_027380)	1364.0	NR_027380	100041231.0	Mm.425871	NR_027380		Gm3219	-	B-cell CLL/lymphoma 7C pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99562930-2	chr12	99562430	99563430	+	875.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_136760)	promoter-TSS (NR_136760)	-911.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87214831-2	chr1	87214331	87215331	+	875.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039169, intron 1 of 6)	intron (NM_001039169, intron 1 of 6)	892.0	NM_001039169	26987.0	Mm.227183	NM_023314	ENSMUSG00000026254	Eif4e2	2700069E09Rik|AI036339|AV129531|D0H0S6743E|Eif4el3	eukaryotic translation initiation factor 4E member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101373662-1	chr15	101373162	101374162	+	875.0	f0_balb.idr	Intergenic	Intergenic	-3537.0	NM_028770	74127.0	Mm.440055	NM_028770	ENSMUSG00000037185	Krt80	1200016G03Rik|2310041I20Rik|Kb20	keratin 80	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-53009124-2	chr10	53008624	53009624	+	875.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178675, intron 2 of 7)	intron (NM_178675, intron 2 of 7)	-226063.0	NR_152766	102639992.0	Mm.375738	NR_152766	ENSMUSG00000112835	Gm36173	-	predicted gene, 36173	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72142751-3	chr6	72142242	72143242	+	875.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 4 of 6)	intron (NM_001035228, intron 4 of 6)	-19545.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110592485-2	chr12	110591985	110592985	+	875.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033340, exon 1 of 1)	non-coding (NR_033340, exon 1 of 1)	1111.0	NR_033340	319786.0	Mm.129691	NR_033340		B930059L03Rik	-	RIKEN cDNA B930059L03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-19840123-2	chr14	19839623	19840623	+	875.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_105025, intron 1 of 2)	intron (NR_105025, intron 1 of 2)	1198.0	NR_105025	52512.0	Mm.483998	NR_105025	ENSMUSG00000114350	D14Ertd670e	-	DNA segment, Chr 14, ERATO Doi 670, expressed	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55094941-4	chr14	55094411	55095411	+	875.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_153083, exon 1 of 2)	5' UTR (NM_153083, exon 1 of 2)	127.0	NM_153083	105663.0	Mm.319204	NM_153083	ENSMUSG00000045691	Thtpa	AW122966	thiamine triphosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137951845-3	chr4	137951257	137952257	+	875.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 15 of 19)	intron (NM_199307, intron 15 of 19)	-41699.0	NM_001256198	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	3.5	12.0	27.0	5.0	6.0	22.0
Merged-chr10-127503356-2	chr10	127502856	127503856	+	875.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359751, intron 3 of 11)	intron (NM_001359751, intron 3 of 11)	1639.0	NM_177707	237611.0	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	1.0	0.0	0.0	0.0	0.0	0.5
Merged-chr13-78203541-2	chr13	78203041	78204041	+	875.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045195, intron 1 of 2)	CpG	-4668.0	NM_010151	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72006079-4	chr8	72005555	72006555	+	875.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024444, intron 2 of 12)	intron (NM_024444, intron 2 of 12)	3571.0	NM_024444	72054.0	Mm.160020	NM_024444	ENSMUSG00000003484	Cyp4f18	1810054N16Rik|Cyp4f3|Cypf18	cytochrome P450, family 4, subfamily f, polypeptide 18	protein-coding	14.5	12.5	9.0	1.0	10.0	3.5
Merged-chr11-6033329-2	chr11	6032829	6033829	+	875.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001174054, intron 1 of 20)	intron (NM_001174054, intron 1 of 20)	32419.0	NM_001174054	12323.0	Mm.439733	NM_007595	ENSMUSG00000057897	Camk2b	CaMKII	calcium/calmodulin-dependent protein kinase II, beta	protein-coding	0.0	0.0	1.0	4.0	0.0	0.0
Merged-chr3-121842398-3	chr3	121841889	121842889	+	875.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27087.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-127542166-3	chr6	127541674	127542674	+	875.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35801.0	NM_001033464	381812.0	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-63791164-1	chr11	63790664	63791664	+	875.0	f1_c57bl6.idr	Intergenic	Intergenic	131120.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	7.0	17.5	10.0	3.0	6.5	10.0
Merged-chr8-126805330-2	chr8	126804830	126805830	+	875.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-43690.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-15860186-3	chr6	15859702	15860702	+	875.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	139541.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83661607-2	chr11	83661107	83662107	+	875.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013652)	promoter-TSS (NM_013652)	-977.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36940861-3	chr16	36940343	36941343	+	875.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008225, intron 3 of 13)	intron (NM_008225, intron 3 of 13)	5860.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-93819631-1	chr11	93819131	93820131	+	875.0	f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	66135.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	9.5	0.0	0.5	2.0	1.5	1.0
Merged-chr19-5458408-1	chr19	5457908	5458908	+	875.0	f1_balb.idr	promoter-TSS (NM_001243307)	promoter-TSS (NM_001243307)	-845.0	NM_001243307	240514.0	Mm.329657	NM_198616	ENSMUSG00000095098	Ccdc85b	AI842788|BB115872	coiled-coil domain containing 85B	protein-coding	0.0	1.0	3.0	0.0	1.5	3.0
Merged-chr7-47146511-3	chr7	47146017	47147017	+	875.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12833.0	NM_013643	19259.0	Mm.4654	NM_013643	ENSMUSG00000030854	Ptpn5	Step	protein tyrosine phosphatase, non-receptor type 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116076947-2	chr11	116076447	116077447	+	875.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001009573, intron 2 of 32)	intron (NM_001009573, intron 2 of 32)	1014.0	NM_001009573	70450.0	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-34027331-4	chr15	34026727	34027727	+	875.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-55492.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	15.0	16.5	12.0	8.5	0.5	0.0
Merged-chr16-94328200-5	chr16	94327693	94328693	+	874.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133229)	promoter-TSS (NM_133229)	-229.0	NM_133229	170765.0	Mm.42604	NM_133229	ENSMUSG00000022941	Ripply3	Dscr6	ripply transcriptional repressor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-78199274-3	chr13	78198778	78199778	+	874.9722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010151)	promoter-TSS (NM_010151)	-405.0	NM_010151	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-31868948-4	chr11	31868474	31869474	+	874.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1966.0	NM_001290676	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	44.5	21.0	36.5	10.0	11.5	10.5
Merged-chr5-142907394-4	chr5	142906905	142907905	+	874.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007393)	promoter-TSS (NM_007393)	-651.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6360154-5	chr19	6359707	6360707	+	874.9500119999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25A|LTR|ERVK	-3483.0	NM_011750	22668.0	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89171870-4	chr15	89171374	89172374	+	874.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	2077.0	NM_001159521	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10844252-4	chr16	10843736	10844736	+	874.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9177.0	NM_001162932	223970.0	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152265536-2	chr3	152265036	152266036	+	874.9166869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_199465, intron 1 of 12)	CpG	259.0	NM_001357206	68810.0	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105614097-4	chr8	105613578	105614578	+	874.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081241, intron 1 of 21)	CpG	-1388.0	NR_035492	100316712.0		NR_035492	ENSMUSG00000089432	Mir1966	mir-1966|mmu-mir-1966	microRNA 1966	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102381755-4	chr15	102381264	102382264	+	874.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14796.0	NM_001348205	170574.0	Mm.263284	NM_130458	ENSMUSG00000060284	Sp7	6430578P22Rik|C22|Osx	Sp7 transcription factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-68172952-3	chr17	68172471	68173471	+	874.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100826.0	NM_177278	320858.0	Mm.137356	NM_177278	ENSMUSG00000041565	L3mbtl4	A730037L19Rik|D930040M24Rik	L3MBTL4 histone methyl-lysine binding protein	protein-coding	1.0	0.0	0.0	0.0	0.5	0.0
Merged-chr14-79503885-4	chr14	79503396	79504396	+	874.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 1 of 8)	MTE2a|LTR|ERVL-MaLR	-11778.0	NM_001286412	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70774735-2	chr8	70774235	70775235	+	874.900024	f1_balb.idr|f1_c57bl6.idr	exon (NM_008841, exon 2 of 16)	exon (NM_008841, exon 2 of 16)	1977.0	NM_008841	18709.0	Mm.12945	NM_008841	ENSMUSG00000031834	Pik3r2	p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding	0.5	1.0	0.0	0.0	0.0	3.5
Merged-chr19-37778110-3	chr19	37777617	37778617	+	874.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80309.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	2.0	6.0
Merged-chr18-11840055-3	chr18	11839499	11840499	+	874.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045421)	promoter-TSS (NR_045421)	439.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	11.0	16.5	13.0	6.0	11.0	8.0
Merged-chr18-65582245-4	chr18	65581737	65582737	+	874.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361053)	promoter-TSS (NM_001361053)	-181.0	NM_001361053	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	11.5	29.5	22.0	11.5	29.5	23.0
Merged-chr15-13244512-4	chr15	13244025	13245025	+	874.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70850.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65372874-4	chr3	65372377	65373377	+	874.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357358, intron 13 of 13)	intron (NM_001357358, intron 13 of 13)	19676.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76736135-4	chr11	76735618	76736618	+	874.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356321, intron 7 of 8)	intron (NM_001356321, intron 7 of 8)	27460.0	NM_016810	53334.0	Mm.20931	NM_016810	ENSMUSG00000010392	Gosr1	AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28	golgi SNAP receptor complex member 1	protein-coding	11.5	34.0	9.0	26.5	29.5	34.5
Merged-chr6-85068577-3	chr6	85068095	85069095	+	874.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 1 of 21)	ID4|SINE|ID	918.0	NM_177077	75914.0	Mm.159621	NM_177077	ENSMUSG00000033769	Exoc6b	4930569O18Rik|G430127E12Rik|Sec15b|Sec15l2|mKIAA0919	exocyst complex component 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-56901221-7	chr6	56900567	56901567	+	874.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360963, intron 1 of 9)	intron (NM_001360963, intron 1 of 9)	819.0	NM_001252374	107569.0	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|P5'N-1|P5N-1|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-68969255-3	chr9	68968758	68969758	+	874.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013646, intron 1 of 10)	MTE2b|LTR|ERVL-MaLR	203912.0	NR_033299	320440.0	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	1.5	4.5	2.5	1.5	0.0	1.0
Merged-chr8-94397474-4	chr8	94396962	94397962	+	874.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	11033.0	NM_022331	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	2.0	4.0	2.0	0.0	4.0	0.0
Merged-chr1-177644381-4	chr1	177643877	177644877	+	874.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1434.0	NR_037994	75589.0	Mm.86666	NR_037994	ENSMUSG00000101746	2310043L19Rik	-	RIKEN cDNA 2310043L19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95509044-3	chr3	95508533	95509533	+	874.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007802, exon 8 of 8)	3' UTR (NM_007802, exon 8 of 8)	9823.0	NM_007802	13038.0	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138976142-4	chr1	138975632	138976632	+	874.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	-1525.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-58752401-4	chr2	58751894	58752894	+	874.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289660, intron 1 of 7)	intron (NM_001289660, intron 1 of 7)	-2790.0	NM_001289659	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56459546-3	chr19	56459030	56460030	+	874.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-2107.0	NM_001164263	226245.0	Mm.156742	NM_172641	ENSMUSG00000035818	Plekhs1	9930023K05Rik	pleckstrin homology domain containing, family S member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-37898244-3	chr8	37897744	37898744	+	874.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145841, intron 2 of 7)	intron (NM_145841, intron 2 of 7)	353958.0	NR_029884	723860.0		NR_029884	ENSMUSG00000065457	Mir383	Mirn383|mir-383|mmu-mir-383	microRNA 383	ncRNA	3.0	11.0	22.0	0.0	3.0	5.0
Merged-chr14-25663858-2	chr14	25663358	25664358	+	874.8333130000001	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001310666, exon 24 of 24)	3' UTR (NM_001310666, exon 24 of 24)	-30312.0	NM_134084	105675.0	Mm.41656	NM_134084	ENSMUSG00000021868	Ppif	AW457192|CyP-D|CyP-F|CypD|PPIase	peptidylprolyl isomerase F (cyclophilin F)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106611331-4	chr8	106610782	106611782	+	874.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009864, intron 2 of 15)	intron (NM_009864, intron 2 of 15)	7932.0	NM_009864	12550.0	Mm.35605	NM_009864	ENSMUSG00000000303	Cdh1	AA960649|ARC-1|E-cad|Ecad|L-CAM|UVO|Um	cadherin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60753013-4	chr18	60752483	60753483	+	874.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4318.0	NM_008306	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0.0	4.5	1.0	0.0	11.5	4.5
Merged-chr10-60283721-4	chr10	60283234	60284234	+	874.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146124)	promoter-TSS (NM_001146124)	-727.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55016600-3	chr12	55016094	55017094	+	874.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30258.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	0.0	5.5	7.0	5.0	12.0	7.0
Merged-chr4-117191912-3	chr4	117191419	117192419	+	874.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-9295.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-11277405-3	chr12	11276903	11277903	+	874.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361252, intron 4 of 9)	intron (NM_001361252, intron 4 of 9)	11517.0	NM_025695	67241.0	Mm.173953	NM_025695	ENSMUSG00000020608	Smc6	2810489L22Rik|3830418C19Rik|AA990493|AU018782|AW742439|SMC-6|Smc6l1|mKIAA4103	structural maintenance of chromosomes 6	protein-coding	0.0	3.0	1.5	1.0	5.0	6.0
Merged-chr4-43420599-3	chr4	43420118	43421118	+	874.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037709, intron 2 of 11)	intron (NM_001037709, intron 2 of 11)	8516.0	NM_177377	329831.0	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34340557-4	chr19	34340049	34341049	+	874.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	49890.0	NM_001146708	14102.0	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	9.0	13.0	4.0	0.0	3.0	0.0
Merged-chr4-24574467-4	chr4	24573982	24574982	+	874.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_199467, exon 14 of 24)	exon (NM_199467, exon 14 of 24)	78031.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-63955195-3	chr11	63954702	63955702	+	874.761108	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-9024.0	NR_131111	78883.0	Mm.410764	NR_131111	ENSMUSG00000086359	9630013K17Rik	-	RIKEN cDNA 9630013K17 gene	ncRNA	0.0	0.0	0.0	0.0	10.5	0.0
Merged-chr10-7037419-3	chr10	7036919	7037919	+	874.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001302795, exon 6 of 6)	3' UTR (NM_001302795, exon 6 of 6)	-14234.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr7-105750824-4	chr7	105750306	105751306	+	874.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009906, intron 3 of 12)	intron (NM_009906, intron 3 of 12)	1429.0	NM_009906	12751.0	Mm.20837	NM_009906	ENSMUSG00000030894	Tpp1	Cln2|LPIC|TPP-1|TPP-I	tripeptidyl peptidase I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65359286-3	chr9	65358763	65359763	+	874.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016688, exon 5 of 5)	3' UTR (NM_016688, exon 5 of 5)	-1797.0	NM_001111145	208080.0	Mm.291862	NM_001111145	ENSMUSG00000086228	Ubap1l	Gm514	ubiquitin-associated protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32707464-3	chr16	32706933	32707933	+	874.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28453.0	NM_080457	140474.0	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding	0.0	2.0	0.0	0.0	2.0	0.0
Merged-chr2-128769710-2	chr2	128769201	128770201	+	874.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 8 of 18)	intron (NM_008587, intron 8 of 18)	-48602.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	25.0	35.0	30.5	27.0	52.0	36.5
Merged-chr12-80918058-4	chr12	80917556	80918556	+	874.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6391.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72410788-2	chr6	72410288	72411288	+	874.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3520.0	NM_019802	56316.0	Mm.19937	NM_019802	ENSMUSG00000053460	Ggcx	-	gamma-glutamyl carboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32332761-4	chr16	32332243	32333243	+	874.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177633, intron 1 of 10)	CpG	491.0	NM_177633	224111.0	Mm.31275	NM_177633	ENSMUSG00000053774	Ubxn7	A630090P18|AI196514|Ubxd7|mKIAA0794	UBX domain protein 7	protein-coding	4.0	19.5	8.0	30.5	82.5	55.5
Merged-chr9-111061571-2	chr9	111061071	111062071	+	874.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	-4053.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.0	13.0	0.0	1.0	4.0	1.0
Merged-chr3-88237617-2	chr3	88237117	88238117	+	874.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17067.0	NM_021375	58176.0	Mm.103777	NM_021375	ENSMUSG00000104445	Rhbg	-	Rhesus blood group-associated B glycoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75006091-4	chr14	75005588	75006588	+	874.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 3 of 3)	intron (NR_030568, intron 3 of 3)	-9939.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61106843-4	chr18	61106400	61107400	+	874.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 2 of 21)	intron (NM_001037859, intron 2 of 21)	1328.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58273911-7	chr13	58273389	58274389	+	874.738098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019832, intron 1 of 11)	CpG	299.0	NM_019832	56278.0	Mm.296625	NM_019832	ENSMUSG00000021552	Gkap1	42kDa|4933400B15Rik|D13Ertd340e|Gkap42	G kinase anchoring protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92692325-4	chr16	92691787	92692787	+	874.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 3 of 6)	intron (NM_001111022, intron 3 of 6)	5042.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101524437-3	chr13	101523956	101524956	+	874.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126876.0	NR_046187	78136.0	Mm.399065	NR_046187		4922502H24Rik	-	RIKEN cDNA 4922502H24 gene	ncRNA	5.5	22.0	13.5	14.5	15.5	13.5
Merged-chr14-120480715-3	chr14	120480269	120481269	+	874.6889039999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029519, intron 1 of 1)	intron (NM_029519, intron 1 of 1)	2308.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	5.5	2.5	2.5	5.5	1.0	3.5
Merged-chr17-63871859-4	chr17	63871332	63872332	+	874.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 1 of 18)	RMER1B|Other|Other	-6234.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5085201-3	chr18	5084687	5085687	+	874.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347449, intron 11 of 30)	intron (NM_001347449, intron 11 of 30)	38598.0	NM_001347449	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87143726-3	chr11	87143263	87144263	+	874.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197987, intron 5 of 23)	PB1D10|SINE|Alu	16688.0	NM_197987	68729.0	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13965107-3	chr8	13964588	13965588	+	874.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361630, intron 2 of 3)	intron (NM_001361630, intron 2 of 3)	9689.0	NM_173744	72148.0	Mm.5727	NM_173744	ENSMUSG00000050052	Tdrp	2610019F03Rik	testis development related protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-129594359-3	chr5	129593843	129594843	+	874.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011846, intron 1 of 9)	intron (NM_011846, intron 1 of 9)	10174.0	NM_011846	23948.0	Mm.42047	NM_011846	ENSMUSG00000029436	Mmp17	MT4-MMP|MT4MMP|MTMMP4	matrix metallopeptidase 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72095370-3	chr6	72094893	72095893	+	874.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2215.0	NM_001035228	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88676388-4	chr10	88675898	88676898	+	874.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011461, intron 5 of 5)	intron (NM_011461, intron 5 of 5)	6625.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	2.0	49.5	34.5	6.0	42.5	28.5
Merged-chr13-52033229-3	chr13	52032752	52033752	+	874.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63489.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121900734-3	chr5	121900235	121901235	+	874.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007804, intron 4 of 22)	intron (NM_007804, intron 4 of 22)	51738.0	NM_001359949	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101473921-2	chr11	101473421	101474421	+	874.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	5746.0	NM_009708	11858.0	Mm.378883	NM_009708	ENSMUSG00000001313	Rnd2	Arhn|Rohn|rho7	Rho family GTPase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126583215-3	chr8	126582690	126583690	+	874.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10246.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-53854673-3	chr6	53854155	53855155	+	874.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33830.0	NM_025817	66873.0	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111220746-4	chr9	111220241	111221241	+	874.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027742, intron 11 of 13)	intron (NM_027742, intron 11 of 13)	50867.0	NM_026810	17350.0	Mm.486383	NM_026810	ENSMUSG00000032498	Mlh1	1110035C23Rik|AI317206|AI325952|AI561766	mutL homolog 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-7455381-3	chr4	7454858	7455858	+	874.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105330.0	NR_040645	71510.0	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41051870-3	chr19	41051358	41052358	+	874.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001043228, intron 8 of 10)	intron (NM_001043228, intron 8 of 10)	22583.0	NM_009345	21673.0	Mm.25620	NM_009345	ENSMUSG00000025014	Dntt	Tdt	deoxynucleotidyltransferase, terminal	protein-coding	12.5	6.5	12.5	12.5	5.0	16.0
Merged-chr7-68683482-2	chr7	68682982	68683982	+	874.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	65026.0	NR_003648	384639.0	Mm.261760	NM_001013781		Gm5334	EG384639	tetraspanin 7 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88899683-2	chr6	88899183	88900183	+	874.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008564)	promoter-TSS (NM_008564)	-903.0	NM_008564	17216.0	Mm.16711	NM_008564	ENSMUSG00000002870	Mcm2	AA959861|AW476101|BM28|CDCL1|Mcmd2|mKIAA0030	minichromosome maintenance complex component 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99394305-4	chr15	99393854	99394854	+	874.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171036, intron 2 of 10)	intron (NM_001171036, intron 2 of 10)	1135.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	47.0	103.5	59.5	16.0	139.5	64.0
Merged-chr2-38286709-4	chr2	38286148	38287148	+	874.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146122, intron 1 of 21)	intron (NM_146122, intron 1 of 21)	736.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-69382957-4	chr13	69382442	69383442	+	874.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150922.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	66.0	100.0	121.5	13.0	12.0	18.5
Merged-chr9-44086001-3	chr9	44085477	44086477	+	874.638855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198091, intron 1 of 11)	intron (NM_198091, intron 1 of 11)	1057.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93450922-4	chr2	93450435	93451435	+	874.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136055, intron 1 of 9)	intron (NM_001136055, intron 1 of 9)	1737.0	NM_001271462	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	9.0	16.5	2.5	5.5	2.5	10.0
Merged-chr14-66847756-4	chr14	66847267	66848267	+	874.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009955, intron 3 of 13)	intron (NM_009955, intron 3 of 13)	20833.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	27.5	40.5	25.0	21.0	31.0	11.5
Merged-chr3-105674816-4	chr3	105674302	105675302	+	874.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001039347)	TTS (NM_001039347)	12769.0	NM_017397	53975.0	Mm.272826	NM_017397	ENSMUSG00000027905	Ddx20	GEMIN3|dp103	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-11353259-3	chr18	11352742	11353742	+	874.622192	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-280034.0	NM_001252495	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98289752-3	chr7	98289248	98290248	+	874.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360615, intron 1 of 10)	B2_Mm2|SINE|B2	19794.0	NM_001360616	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164403061-3	chr2	164402612	164403612	+	874.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009036)	promoter-TSS (NM_009036)	-82.0	NM_009036	19668.0	Mm.473794	NM_009036	ENSMUSG00000017007	Rbpjl	RBP-L|Rbpsuhl	recombination signal binding protein for immunoglobulin kappa J region-like	protein-coding	3.0	0.5	4.0	0.0	0.0	1.5
Merged-chr3-104541464-4	chr3	104540969	104541969	+	874.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29551.0	NM_001310698	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147402434-4	chr4	147401930	147402930	+	874.5833130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	B2_Mm2|SINE|B2	-150847.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56573646-3	chr18	56573147	56574147	+	874.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127338)	promoter-TSS (NM_001127338)	-708.0	NM_001127338	110695.0	Mm.30250	NM_138600	ENSMUSG00000053644	Aldh7a1	Atq1|D18Wsu181e	aldehyde dehydrogenase family 7, member A1	protein-coding	11.0	57.0	29.0	10.5	21.0	21.5
Merged-chr2-30246007-4	chr2	30245481	30246481	+	874.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177725, intron 2 of 3)	intron (NM_177725, intron 2 of 3)	8212.0	NM_177725	241296.0	Mm.389232	NM_177725	ENSMUSG00000007476	Lrrc8a	Lrrc8|mKIAA1437	leucine rich repeat containing 8A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-90435370-3	chr6	90434858	90435858	+	874.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6878.0	NM_173775	243538.0	Mm.386876	NM_173775	ENSMUSG00000048794	Cfap100	AW048498|C030041G11Rik|C230069K22Rik|Ccdc37	cilia and flagella associated protein 100	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132812021-3	chr7	132811526	132812526	+	874.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	1170.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-42837312-4	chr17	42836819	42837819	+	874.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009847, intron 4 of 17)	intron (NM_009847, intron 4 of 17)	39105.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	31.5	27.5	12.5	21.5	34.5	7.5
Merged-chr2-125594189-4	chr2	125593697	125594697	+	874.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081091, intron 13 of 27)	intron (NM_001081091, intron 13 of 27)	30916.0	NM_001081091	99100.0	Mm.330545	NM_001081091	ENSMUSG00000068394	Cep152	AI851464|mKIAA0912	centrosomal protein 152	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-38074023-4	chr7	38073532	38074532	+	874.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33458.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	0.0	3.5	0.0	0.0	2.5	0.0
Merged-chr7-16104144-6	chr7	16103604	16104604	+	874.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025898, intron 1 of 10)	intron (NM_025898, intron 1 of 10)	5524.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	6.5	17.5	5.5	2.5	4.5	7.0
Merged-chr11-6484570-6	chr11	6484085	6485085	+	874.5361330000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8509.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	14.5	19.5	16.5	7.0	25.0	15.0
Merged-chr17-55931871-5	chr17	55931345	55932345	+	874.5200199999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	13414.0	NM_146249	240120.0	Mm.441018	NM_146249	ENSMUSG00000062101	Zfp119b	-	zinc finger protein 119b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93257442-3	chr10	93256944	93257944	+	874.5166630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282967, intron 2 of 3)	intron (NM_001282967, intron 2 of 3)	53715.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	20.5	29.5	36.0	20.5	80.5	56.5
Merged-chr1-138752554-2	chr1	138752054	138753054	+	874.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-70479.0	NR_040304	545363.0	Mm.362817	NR_040304	ENSMUSG00000100459	Gm5833	-	predicted gene 5833	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124666139-2	chr2	124665639	124666639	+	874.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172537, exon 17 of 17)	3' UTR (NM_172537, exon 17 of 17)	12558.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-113619229-3	chr11	113618674	113619674	+	874.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009217)	promoter-TSS (NM_009217)	-307.0	NM_009217	20606.0		NM_009217	ENSMUSG00000047904	Sstr2	SRIF-1|SS2R|SSTR-2|Smstr-2|Smstr2|sst2	somatostatin receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45719110-2	chr7	45718610	45719610	+	874.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009077, intron 1 of 5)	intron (NM_009077, intron 1 of 5)	1039.0	NM_009077	19899.0	Mm.3459	NM_009077	ENSMUSG00000059070	Rpl18	L18|Rpl18a	ribosomal protein L18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58624234-2	chr16	58623734	58624734	+	874.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7256.0	NM_001033404	328695.0	Mm.293308	NM_001033404	ENSMUSG00000075002	Gm813	Gm1781	predicted gene 813	protein-coding	0.0	7.5	0.0	0.0	0.0	1.0
Merged-chr15-74959391-2	chr15	74958891	74959891	+	874.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164036, exon 4 of 4)	3' UTR (NM_001164036, exon 4 of 4)	4285.0	NM_001164040	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.5	10.5	2.5	10.0	27.0	8.0
Merged-chr19-31947955-2	chr19	31947455	31948455	+	874.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081074, exon 12 of 12)	3' UTR (NM_001081074, exon 12 of 12)	79194.0	NM_001081074	69865.0	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-149456266-2	chr5	149455766	149456766	+	874.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029464, intron 3 of 6)	MTEa|LTR|ERVL-MaLR	16606.0	NM_001310765	75860.0	Mm.159605	NM_029464	ENSMUSG00000029660	Tex26	4930588N13Rik	testis expressed 26	protein-coding	0.0	4.5	0.0	0.0	5.0	0.0
Merged-chr7-109170651-4	chr7	109170154	109171154	+	874.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302206)	promoter-TSS (NM_001302206)	-135.0	NM_057173	109594.0	Mm.360145	NM_057173	ENSMUSG00000036111	Lmo1	Rbtn-1|Rbtn1|Ttg1	LIM domain only 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114670247-2	chr11	114669747	114670747	+	874.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048058, intron 2 of 3)	B1_Mm|SINE|Alu	1466.0	NM_001048058	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119425157-2	chr11	119424657	119425657	+	874.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	34685.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr18-14684964-2	chr18	14684464	14685464	+	874.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2050.0	NM_001161371	268996.0	Mm.31761	NM_009280	ENSMUSG00000037013	Ss18	D130059H17|Ssxt|Syt	SS18, nBAF chromatin remodeling complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53048026-2	chr4	53047526	53048526	+	874.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 37 of 49)	MTC|LTR|ERVL-MaLR	36146.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-126521049-2	chr2	126520549	126521549	+	874.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21202.0	NM_001359975	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112634930-2	chr12	112634430	112635430	+	874.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 8 of 12)	intron (NM_007421, intron 8 of 12)	-9898.0	NM_001161737	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-28189895-4	chr15	28189410	28190410	+	874.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13856.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35872207-3	chr16	35871703	35872703	+	874.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039530)	promoter-TSS (NM_001039530)	-821.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61343321-2	chr10	61342821	61343821	+	874.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013753, intron 12 of 19)	intron (NM_013753, intron 12 of 19)	40202.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-178341005-2	chr1	178340505	178341505	+	874.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-3190.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191286648-2	chr1	191286148	191287148	+	874.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31470.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0.0	0.0	0.0	0.0	6.0	0.0
Merged-chr1-54474604-2	chr1	54474104	54475104	+	874.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163314, exon 27 of 27)	3' UTR (NM_001163314, exon 27 of 27)	-35578.0	NM_001033194	98488.0	Mm.25856	NM_001033194	ENSMUSG00000041303	Gtf3c3	TF3C-gamma|TFIIIC102	general transcription factor IIIC, polypeptide 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117865231-2	chr10	117864731	117865731	+	874.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-19257.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-56405036-4	chr12	56404544	56405544	+	874.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59150.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75563596-2	chr11	75563089	75564089	+	874.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_173388, exon 9 of 14)	exon (NM_173388, exon 9 of 14)	12160.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	17.5	55.5	47.5	25.5	80.0	71.0
Merged-chr11-117952204-2	chr11	117951704	117952704	+	874.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17162.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109323983-4	chr3	109323445	109324445	+	874.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16738.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	2.5	0.0	6.5	2.5	0.0	1.0
Merged-chr14-62243424-4	chr14	62242942	62243942	+	874.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49537.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80187050-4	chr7	80186483	80187483	+	874.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013659, exon 1 of 15)	5' UTR (NM_013659, exon 1 of 15)	142.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61558449-3	chr8	61557947	61558947	+	874.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	32722.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128872469-3	chr6	128871966	128872966	+	874.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254946, intron 2 of 2)	BGLII_B|LTR|ERVK	-15121.0	NM_001289706	93675.0	Mm.391513	NM_020257	ENSMUSG00000030365	Clec2i	Clr-g|Clrg|Dcl1|LCL-1|OCILrP2	C-type lectin domain family 2, member i	protein-coding	0.0	10.0	0.0	0.0	1.5	0.5
Merged-chr17-87449055-3	chr17	87448559	87449559	+	874.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2124.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	27.0	15.5	19.5	32.0	6.5	9.5
Merged-chr2-166009664-3	chr2	166009076	166010076	+	874.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	16939.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	1.0	2.0	8.5	8.5	15.5	9.0
Merged-chr11-62808162-4	chr11	62807655	62808655	+	874.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12098.0	NM_053169	94092.0	Mm.117087	NM_053169	ENSMUSG00000047821	Trim16	9130006M08Rik|AI482483|EBBP	tripartite motif-containing 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181219955-6	chr2	181219373	181220373	+	874.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199312)	promoter-TSS (NM_199312)	-143.0	NM_199312	332713.0	Mm.23349	NM_199312	ENSMUSG00000047841	Fndc11	1700026M20Rik	fibronectin type III domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45393843-2	chr4	45393343	45394343	+	874.4166869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14923.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	0.0	0.0	0.0	2.5	0.0	1.0
Merged-chr19-5741989-4	chr19	5741478	5742478	+	874.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008520, exon 2 of 28)	5' UTR (NM_008520, exon 2 of 28)	1074.0	NM_008520	16998.0	Mm.182396	NM_008520	ENSMUSG00000024940	Ltbp3	Ltbp2|mFLJ00070	latent transforming growth factor beta binding protein 3	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr10-18931630-3	chr10	18931095	18932095	+	874.400024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80368.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	4.5	2.0	5.0	0.0	2.5	0.0
Merged-chr13-105380093-4	chr13	105379567	105380567	+	874.392822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-63626.0	NM_008308	15550.0	Mm.4716	NM_008308	ENSMUSG00000021721	Htr1a	Gpcr18	5-hydroxytryptamine (serotonin) receptor 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96599080-3	chr15	96598579	96599579	+	874.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166456, intron 4 of 15)	intron (NM_001166456, intron 4 of 15)	42883.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55491483-3	chr19	55490995	55491995	+	874.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 6 of 8)	intron (NM_001360431, intron 6 of 8)	175438.0	NM_001293686	53611.0	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	23.5	46.5	22.5	2.0	8.0	1.0
Merged-chr3-88483889-3	chr3	88483384	88484384	+	874.388855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019390, exon 9 of 10)	exon (NM_019390, exon 9 of 10)	9428.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80259679-7	chr12	80259167	80260167	+	874.38092	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 1 of 20)	CpG	704.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-40449430-3	chr8	40448921	40449921	+	874.3777470000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357249, intron 3 of 12)	intron (NM_001357249, intron 3 of 12)	25606.0	NM_001357249	70546.0	Mm.34326	NM_178395	ENSMUSG00000039470	Zdhhc2	5730415P04Rik|6430583A19Rik|DHHC-2	zinc finger, DHHC domain containing 2	protein-coding	0.5	12.5	10.5	7.5	6.0	6.5
Merged-chr11-109434475-3	chr11	109434005	109435005	+	874.361145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252193, intron 6 of 7)	intron (NM_001252193, intron 6 of 7)	-5573.0	NR_040680	100503496.0	Mm.265874	NR_040680		Gm45916	-	predicted gene, 45916	ncRNA	5.0	5.0	3.5	0.0	0.5	4.5
Merged-chr13-111509491-2	chr13	111508991	111509991	+	874.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5|LINE|L1	-19364.0	NM_001361924	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54171904-1	chr6	54171404	54172404	+	874.3333130000001	f0_balb.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	-92954.0	NM_001311133	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	1.0	0.0	4.0	0.0	0.0	3.0
Merged-chr13-81109111-3	chr13	81108611	81109611	+	874.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	145037.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-59762830-3	chr1	59762308	59763308	+	874.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1471.0	NM_007561	12168.0	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	14.0	36.0	29.0	14.5	23.5	36.0
Merged-chr5-108566730-3	chr5	108566222	108567222	+	874.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16695.0	NM_007756	12889.0	Mm.5195	NM_007756	ENSMUSG00000033615	Cplx1	921-S	complexin 1	protein-coding	0.0	7.5	6.0	2.5	5.0	7.0
Merged-chr11-118201624-3	chr11	118201101	118202101	+	874.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	11141.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-61994181-3	chr15	61993719	61994719	+	874.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8878.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73291885-3	chr12	73291385	73292385	+	874.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037717, intron 2 of 15)	intron (NM_001037717, intron 2 of 15)	5037.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	0.5	2.0	9.0	1.0	29.5	9.5
Merged-chr9-106891318-3	chr9	106890762	106891762	+	874.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_029103, intron 1 of 3)	intron (NM_029103, intron 1 of 3)	676.0	NM_029103	74840.0	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	10.5	30.5	15.5	3.5	36.5	15.0
Merged-chr17-86063698-4	chr17	86063186	86064186	+	874.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030133, intron 14 of 20)	intron (NM_030133, intron 14 of 20)	81489.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	0.0	0.0	2.0	0.0	0.0	2.0
Merged-chr15-58803099-3	chr15	58802605	58803605	+	874.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175212, intron 1 of 6)	intron (NM_175212, intron 1 of 6)	20322.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41475014-4	chr19	41474524	41475524	+	874.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-50228.0	NM_001326287	627352.0	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	8.5	25.5	30.0	13.5	31.0	42.0
Merged-chr12-101718691-3	chr12	101718181	101719181	+	874.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001082976)	promoter-TSS (NM_001082976)	-158.0	NM_001082976	74413.0	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding	0.0	1.0	3.5	1.5	0.0	2.0
Merged-chr14-61294727-3	chr14	61294214	61295214	+	874.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033788, exon 2 of 3)	non-coding (NR_033788, exon 2 of 3)	10620.0	NR_033788	67355.0	Mm.193728	NR_033788	ENSMUSG00000101505	1700109G14Rik	1700126G13Rik	RIKEN cDNA 1700109G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-54563761-1	chr1	54563261	54564261	+	874.3333130000001	f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6077.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	136.0	248.5	224.0	110.0	343.5	228.5
Merged-chr11-95823337-2	chr11	95822837	95823837	+	874.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1163.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46394562-3	chr19	46394074	46395074	+	874.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016860, intron 1 of 10)	intron (NM_016860, intron 1 of 10)	1161.0	NM_016860	54130.0	Mm.3118	NM_016860	ENSMUSG00000025228	Actr1a	Arp1|alpha-Arp1	ARP1 actin-related protein 1A, centractin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34392443-4	chr17	34391843	34392843	+	874.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6477.0	NM_001001177	407788.0	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	8.5	12.0	4.5	17.5	10.5	5.0
Merged-chr7-92962014-4	chr7	92961531	92962531	+	874.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR16|LTR|ERVK	86778.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40808725-2	chr9	40808225	40809225	+	874.2999880000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7452.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.0	3.0	5.5	13.5	1.0	2.5
Merged-chr4-63594041-4	chr4	63593519	63594519	+	874.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6745.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-52059737-4	chr16	52059256	52060256	+	874.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	28207.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79131449-4	chr2	79130945	79131945	+	874.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123981.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-88866029-3	chr18	88865525	88866525	+	874.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28182.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60697692-3	chr11	60697187	60698187	+	874.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2003.0	NM_001159405	16897.0	Mm.285453	NM_008502	ENSMUSG00000020536	Llgl1	AI325176|Lgl1|Llglh|Mgl1	LLGL1 scribble cell polarity complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-54736518-4	chr9	54736018	54737018	+	874.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1969.0	NM_001025375	66317.0	Mm.28437	NM_023191	ENSMUSG00000061559	Wdr61	2700038L12Rik|2810418I05Rik|REC14	WD repeat domain 61	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31162037-2	chr14	31161537	31162537	+	874.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_138672, intron 7 of 68)	intron (NM_138672, intron 7 of 68)	6604.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-65332117-4	chr14	65331621	65332621	+	874.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26555.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	2.5	0.0	1.5	2.0	0.0	5.0
Merged-chr7-113256044-2	chr7	113255516	113256516	+	874.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243048, intron 2 of 16)	intron (NM_001243048, intron 2 of 16)	48551.0	NM_007489	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	0.0	6.0	1.0	27.5	7.0	2.0
Merged-chr17-83954409-2	chr17	83953909	83954909	+	874.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44143.0	NR_130994	78148.0	Mm.243918	NR_130994		8430430B14Rik	-	RIKEN cDNA 8430430B14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141462808-2	chr7	141462308	141463308	+	874.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_152219, intron 1 of 1)	intron (NR_152219, intron 1 of 1)	1096.0	NR_152220	100126795.0	Mm.386851	NR_152219	ENSMUSG00000073787	Gm10575	-	predicted gene 10575	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80396709-2	chr7	80396209	80397209	+	874.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011046, intron 6 of 15)	B1_Mur1|SINE|Alu	6103.0	NM_011046	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0.0	1.5	0.0	0.0	3.5	2.0
Merged-chr10-21524235-2	chr10	21523735	21524735	+	874.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68910.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	0.0	0.5	2.0	0.0	0.5	0.0
Merged-chr3-40525532-4	chr3	40525038	40526038	+	874.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2626.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-49626740-4	chr4	49626207	49627207	+	874.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCC)n|Simple_repeat|Simple_repeat	-5353.0	NM_001163263	109331.0	Mm.24765	NM_182999	ENSMUSG00000028309	Rnf20	4833430L21Rik|AW540162|C79397|mKIAA4116	ring finger protein 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35359564-2	chr17	35359015	35360015	+	874.2333369999999	f0_balb.idr|f1_balb.idr	Intergenic	CpG	17182.0	NM_010392	15013.0	Mm.427969	NM_010392	ENSMUSG00000091705	H2-Q2	BE136769|Gm11132|H-2Q2|gs14-2	histocompatibility 2, Q region locus 2	protein-coding	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr2-158134033-3	chr2	158133509	158134509	+	874.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 4 of 12)	intron (NM_009373, intron 4 of 12)	12383.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45452962-3	chr7	45452457	45453457	+	874.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030678, intron 14 of 15)	B1_Mus1|SINE|Alu	6929.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30600633-4	chr16	30600145	30601145	+	874.220215	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177632, exon 1 of 1)	exon (NM_177632, exon 1 of 1)	922.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43685557-4	chr7	43685046	43686046	+	874.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4872.0	NM_174866	317653.0	Mm.247377	NM_174866	ENSMUSG00000044737	Klk14	GK14	kallikrein related-peptidase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4504831-4	chr2	4504322	4505322	+	874.208374	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 5 of 23)	intron (NM_001177843, intron 5 of 23)	-54932.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84723011-4	chr8	84722524	84723524	+	874.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001297601, intron 6 of 8)	intron (NM_001297601, intron 6 of 8)	21567.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	6.5	0.0	2.5	3.0	5.0	1.0
Merged-chr11-97512435-7	chr11	97511921	97512921	+	874.1904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018873, exon 20 of 20)	3' UTR (NM_018873, exon 20 of 20)	-12081.0	NM_001289118	100141474.0	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	12.0	26.0	18.5	16.5	20.0	10.5
Merged-chr9-75435367-3	chr9	75434852	75435852	+	874.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-6172.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	17.5	51.5	36.0	12.0	65.5	25.5
Merged-chr15-93252598-3	chr15	93252080	93253080	+	874.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033275, intron 4 of 7)	intron (NM_001033275, intron 4 of 7)	22599.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86947957-3	chr12	86947447	86948447	+	874.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173735, intron 1 of 3)	CpG	604.0	NM_001289432	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6642488-3	chr2	6642034	6643034	+	874.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 5 of 15)	intron (NM_001110232, intron 5 of 15)	79128.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57514515-3	chr6	57514018	57515018	+	874.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175523, intron 5 of 6)	intron (NM_175523, intron 5 of 6)	20908.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-51168212-3	chr6	51167732	51168732	+	874.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	101678.0	NR_029719	387166.0		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	0.5	1.0	0.5	1.0	4.0	0.5
Merged-chr2-103638146-3	chr2	103637647	103638647	+	874.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	71837.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	5.5	4.5	3.0	0.0	4.5	9.5
Merged-chr4-139761405-3	chr4	139760895	139761895	+	874.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011039, intron 7 of 8)	intron (NM_011039, intron 7 of 8)	71573.0	NM_011039	18509.0	Mm.218760	NM_011039	ENSMUSG00000028736	Pax7	Pax-7	paired box 7	protein-coding	12.5	9.5	16.5	1.5	0.0	1.0
Merged-chr11-104549759-4	chr11	104549261	104550261	+	874.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010858)	promoter-TSS (NM_010858)	859.0	NM_001285990	217232.0	Mm.89845	NM_145436	ENSMUSG00000020687	Cdc27	AI452358|APC3|BC023187	cell division cycle 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73622643-2	chr7	73622143	73623143	+	874.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63920.0	NR_033604	244061.0	Mm.484605	NR_033604	ENSMUSG00000108337	Gm4971	EG244061	Smad nuclear interacting protein 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95497104-4	chr9	95496552	95497552	+	874.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357977, intron 2 of 25)	Lx9|LINE|L1	14944.0	NM_001357975	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	7.0	32.0	15.0	3.5	12.5	14.5
Merged-chr9-15034204-8	chr9	15033679	15034679	+	874.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019482, intron 1 of 4)	intron (NM_019482, intron 1 of 4)	11299.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167950388-4	chr2	167949881	167950881	+	874.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	18054.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70832355-4	chr9	70831830	70832830	+	874.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	102478.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58581533-4	chr9	58581103	58582103	+	874.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009145)	promoter-TSS (NM_009145)	-637.0	NM_001293673	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-133499051-4	chr2	133498539	133499539	+	874.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53120.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24930852-3	chr16	24930301	24931301	+	874.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-128838.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-94483517-3	chr3	94483006	94484006	+	874.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357787)	promoter-TSS (NM_001357787)	784.0	NR_110353	78784.0	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|ETR-1|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	0.0	1.5	1.0	0.0	0.0	6.5
Merged-chr17-55976419-3	chr17	55975909	55976909	+	874.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001159523, exon 7 of 7)	3' UTR (NM_001159523, exon 7 of 7)	5927.0	NM_009168	20420.0	Mm.20908	NM_009168	ENSMUSG00000039154	Shd	AI413439	src homology 2 domain-containing transforming protein D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107867260-4	chr3	107866747	107867747	+	874.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9983.0	NM_133867	99662.0	Mm.108491	NM_133867	ENSMUSG00000040600	Eps8l3	AI504489|Eps8r3	EPS8-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-82795832-2	chr1	82795332	82796332	+	874.0833130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-27376.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116308392-4	chr7	116307940	116308940	+	874.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305185)	promoter-TSS (NM_001305185)	-64.0	NM_001305185	233765.0	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9098423-4	chr13	9097911	9098911	+	874.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 1 of 17)	intron (NM_172585, intron 1 of 17)	4530.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29252351-5	chr19	29251785	29252785	+	874.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001048177, intron 1 of 23)	intron (NM_001048177, intron 1 of 23)	482.0	NM_008413	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-31872918-7	chr11	31872502	31873502	+	874.045349	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290676, exon 1 of 9)	exon (NM_001290676, exon 1 of 9)	2062.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	2.0	0.0	14.5	2.5	3.5	4.5
Merged-chr5-32013223-4	chr5	32012704	32013704	+	874.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 10 of 11)	intron (NM_144541, intron 10 of 11)	-123268.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	3.5	8.0	5.5	6.5	3.0	8.5
Merged-chr18-84809165-4	chr18	84808672	84809672	+	874.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42166.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-64949464-4	chr8	64948932	64949932	+	874.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163747, intron 1 of 4)	ID_B1|SINE|B4	2247.0	NM_028427	73067.0	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81763619-4	chr7	81763031	81764031	+	874.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025997, intron 1 of 2)	CpG	578.0	NM_025997	67148.0	Mm.241472	NM_025997	ENSMUSG00000038646	Fam103a1	2410047I02Rik|2610204K14Rik|RAM	family with sequence similarity 103, member A1	protein-coding	3.0	4.5	7.0	2.0	1.5	3.0
Merged-chr8-64941675-4	chr8	64941202	64942202	+	874.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5483.0	NM_001163747	73067.0	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116166454-4	chr3	116165879	116166879	+	874.020874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER104|DNA|TcMar-Tc2	-36691.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	3.0	14.0	9.5	5.0	15.0	1.0
Merged-chr9-118676637-2	chr9	118676100	118677100	+	874.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 11 of 27)	intron (NM_133721, intron 11 of 27)	-35092.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	13.5	62.0	34.0	8.5	10.5	19.0
Merged-chr8-115626600-4	chr8	115626085	115627085	+	874.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80309.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-18940388-2	chr8	18939888	18940888	+	874.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176951, intron 4 of 6)	MLT1H|LTR|ERVL-MaLR	10483.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155584370-3	chr2	155583896	155584896	+	874.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291111, intron 1 of 11)	ID_B1|SINE|B4	8414.0	NM_001291111	14854.0	Mm.252316	NM_008180	ENSMUSG00000027610	Gss	AI314904|GS-A/GS-B|GSH-S	glutathione synthetase	protein-coding	21.0	11.5	4.0	7.5	6.0	10.0
Merged-chr5-24754030-2	chr5	24753530	24754530	+	874.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153076, intron 3 of 3)	intron (NM_153076, intron 3 of 3)	3813.0	NM_153076	214301.0	Mm.63484	NM_153076	ENSMUSG00000038135	Crygn	-	crystallin, gamma N	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170365487-2	chr1	170364987	170365987	+	874.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 4 of 9)	intron (NM_001109985, intron 4 of 9)	56626.0	NM_001039593	76925.0	Mm.33631	NM_001039593	ENSMUSG00000042800	Spata46	1700015E13Rik	spermatogenesis associated 46	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43448591-2	chr13	43448091	43449091	+	874.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019930, intron 2 of 13)	PB1D7|SINE|Alu	32382.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5639802-3	chr6	5639308	5640308	+	874.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85831.0	NM_001191023	13426.0	Mm.20893	NM_010063	ENSMUSG00000029757	Dync1i1	DH IC-1|DHIC-1|DIC|Dncic1|IC74	dynein cytoplasmic 1 intermediate chain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-125160494-3	chr4	125159993	125160993	+	874.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32612.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20183293-2	chr13	20182793	20183793	+	874.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	L2a|LINE|L2	92786.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.0	2.5	5.5	0.0	1.5	5.5
Merged-chr2-127003458-2	chr2	127002960	127003960	+	874.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5251.0	NM_175550	108011.0	Mm.134045	NM_175550	ENSMUSG00000001998	Ap4e1	2310033A20Rik|9930028M04Rik|AV087807	adaptor-related protein complex AP-4, epsilon 1	protein-coding	1.0	6.0	6.5	8.5	12.5	20.5
Merged-chr8-84635310-2	chr8	84634810	84635810	+	874.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252060, intron 43 of 47)	intron (NM_001252060, intron 43 of 47)	27542.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	12.0	0.0	0.0	1.0	0.0	0.0
Merged-chr4-132783605-3	chr4	132783105	132784105	+	874.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033308, intron 4 of 5)	intron (NM_001033308, intron 4 of 5)	12759.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	11.5	57.5	14.0	4.0	16.0	5.5
Merged-chr1-85900687-3	chr1	85900190	85901190	+	874.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022417, intron 1 of 5)	intron (NM_022417, intron 1 of 5)	6180.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4728131-4	chr16	4727561	4728561	+	874.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136066, intron 1 of 5)	intron (NM_001136066, intron 1 of 5)	1700.0	NM_001136066	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39493212-2	chr10	39492712	39493712	+	874.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122893, intron 3 of 13)	intron (NM_001122893, intron 3 of 13)	-119722.0	NM_134000	103213.0	Mm.436686	NM_134000	ENSMUSG00000019842	Traf3ip2	AI429613|Act1|CIKS	TRAF3 interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24950326-4	chr2	24949820	24950820	+	874.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_147179, exon 1 of 6)	5' UTR (NM_147179, exon 1 of 6)	162.0	NM_147179	67187.0	Mm.296106	NM_026021	ENSMUSG00000026974	Zmynd19	2700064H14Rik|AA536891|AU014915|mizip	zinc finger, MYND domain containing 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128356967-2	chr7	128356467	128357467	+	874.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58836.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132608901-2	chr4	132608401	132609401	+	874.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-30145.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	5.0	2.0	1.0	5.0	2.0	1.0
Merged-chr14-30216804-3	chr14	30216286	30217286	+	874.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 3 of 46)	intron (NM_001083616, intron 3 of 46)	136700.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	2.0	3.0	3.5	0.0	12.5	3.0
Merged-chr19-21129729-2	chr19	21129229	21130229	+	874.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25019.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127192375-2	chr7	127191828	127192828	+	874.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027353, exon 7 of 7)	3' UTR (NM_027353, exon 7 of 7)	3749.0	NM_001285907	70233.0	Mm.28050	NM_027353	ENSMUSG00000042502	Cd2bp2	1500011B02Rik|2410024K20Rik|AW048183	CD2 antigen (cytoplasmic tail) binding protein 2	protein-coding	0.0	0.0	0.0	0.0	5.0	0.0
Merged-chr2-157132966-2	chr2	157132462	157133462	+	874.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001139520, intron 1 of 16)	intron (NM_001139520, intron 1 of 16)	2260.0	NM_001139520	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13577879-2	chr9	13577379	13578379	+	874.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42110.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	1.5	8.0	3.0	4.5	1.0	0.5
Merged-chr9-53829459-2	chr9	53828959	53829959	+	874.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20792.0	NM_025540	66402.0	Mm.29132	NM_025540	ENSMUSG00000042045	Sln	2310045A07Rik	sarcolipin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76750866-1	chr15	76750366	76751366	+	874.0	f1_c57bl6.idr	intron (NM_198420, intron 3 of 10)	intron (NM_198420, intron 3 of 10)	-27021.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	4.0	5.0	0.0	0.0	2.5	1.5
Merged-chr6-97433552-2	chr6	97432965	97433965	+	874.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	MTE2b|LTR|ERVL-MaLR	25821.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-121419170-3	chr2	121418674	121419674	+	874.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007952, intron 1 of 12)	intron (NM_007952, intron 1 of 12)	5272.0	NM_007952	14827.0	Mm.263177	NM_007952	ENSMUSG00000027248	Pdia3	58kDa|ERp57|ERp60|ERp61|Erp|Grp58|PDI|PDI-Q2|PI-PLC|PLC[a]|Plca	protein disulfide isomerase associated 3	protein-coding	16.5	25.0	8.5	25.5	29.0	29.5
Merged-chr7-98174490-2	chr7	98173990	98174990	+	874.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007602, intron 1 of 12)	intron (NM_007602, intron 1 of 12)	-2704.0	NR_045972	330599.0	Mm.406608	NR_045969		Gm16938	-	predicted gene, 16938	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117879688-2	chr11	117879188	117880188	+	874.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6162.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-124701769-2	chr4	124701269	124702269	+	874.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010213, intron 1 of 5)	intron (NM_010213, intron 1 of 5)	1070.0	NM_010213	14201.0	Mm.331856	NM_010213	ENSMUSG00000032643	Fhl3	SLIM2	four and a half LIM domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100513703-4	chr5	100513173	100514173	+	874.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4636.0	NM_001359203	26891.0	Mm.957	NM_012001	ENSMUSG00000035297	Cops4	AW208976|D5Ertd774e|SGN4	COP9 signalosome subunit 4	protein-coding	0.0	4.5	0.0	0.0	0.0	0.0
Merged-chr4-3778583-2	chr4	3778083	3779083	+	874.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	57072.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0.0	21.5	9.5	8.0	7.5	10.0
Merged-chr9-66836258-2	chr9	66835758	66836758	+	874.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-1552.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9841335-2	chr4	9840835	9841835	+	874.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3037.0	NM_013526	242316.0	Mm.302555	NM_013526	ENSMUSG00000051279	Gdf6	BMP-13|BMP13|GDF16	growth differentiation factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50452188-3	chr9	50451689	50452689	+	874.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42336.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21722490-1	chr13	21721990	21722990	+	874.0	f0_balb.idr	TTS (NM_178200)	TTS (NM_178200)	446.0	NM_178200	319186.0	Mm.277425	NM_178200	ENSMUSG00000114279	Hist1h2bm	H2b-291b	histone cluster 1, H2bm	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16198887-1	chr7	16198387	16199387	+	874.0	f1_c57bl6.idr	exon (NM_001285931, exon 15 of 17)	exon (NM_001285931, exon 15 of 17)	23106.0	NM_001285931	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	0.0	6.5	4.0	0.0	0.0	1.0
Merged-chr18-34854648-2	chr18	34854148	34855148	+	874.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-6559.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41378373-2	chr4	41377873	41378873	+	874.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355509, intron 3 of 5)	BC1_Mm|scRNA|scRNA	26410.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71388456-3	chr8	71387941	71388941	+	873.9722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181418, intron 9 of 12)	MTE2b|LTR|ERVL-MaLR	-6489.0	NM_010150	13864.0	Mm.28989	NM_010150	ENSMUSG00000002393	Nr2f6	AV090102|COUP-TF3|EAR2|Erbal2	nuclear receptor subfamily 2, group F, member 6	protein-coding	5.0	14.5	12.0	1.0	11.0	6.0
Merged-chr8-125596392-4	chr8	125595894	125596894	+	873.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015535, intron 2 of 2)	intron (NR_015535, intron 2 of 2)	11756.0	NR_015535	75930.0	Mm.195663	NR_015535	ENSMUSG00000110629	4930567H12Rik	4930579P07Rik	RIKEN cDNA 4930567H12 gene	ncRNA	17.0	15.5	6.5	5.0	28.0	16.0
Merged-chr2-26561837-4	chr2	26561348	26562348	+	873.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19208.0	NM_178444	353156.0	Mm.268933	NM_178444	ENSMUSG00000026921	Egfl7	VE-statin|Zneu1	EGF-like domain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-33821168-6	chr5	33820647	33821647	+	873.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-21965.0	NM_175231	107823.0	Mm.19892	NM_175231	ENSMUSG00000057406	Nsd2	5830445G22Rik|9430010A17Rik|AW555663|C130020C13Rik|D030027O06Rik|D930023B08Rik|MMSET|Whsc1|Whsc1l|mKIAA1090	nuclear receptor binding SET domain protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-14152128-4	chr12	14151620	14152620	+	873.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029007)	promoter-TSS (NM_029007)	-82.0	NM_029007	105005.0	Mm.227253	NM_029007	ENSMUSG00000020607	Fam84a	2310003N02Rik|4731402F03Rik|AW125753|Nse1	family with sequence similarity 84, member A	protein-coding	9.0	8.0	2.5	0.0	0.0	3.5
Merged-chr1-84467914-4	chr1	84467423	84468423	+	873.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152915, intron 7 of 12)	intron (NM_152915, intron 7 of 12)	-183278.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115513684-6	chr11	115513133	115514133	+	873.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008258, intron 1 of 4)	intron (NM_008258, intron 1 of 4)	760.0	NM_008258	15374.0	Mm.1775	NM_008258	ENSMUSG00000020737	Jpt1	Hn1	Jupiter microtubule associated homolog 1	protein-coding	44.0	60.0	60.5	30.0	70.5	59.5
Merged-chr14-103392575-4	chr14	103392088	103393088	+	873.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45788.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125597267-3	chr7	125596734	125597734	+	873.900024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6195.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	47.5	146.0	110.0	57.5	114.5	49.5
Merged-chr15-5355491-3	chr15	5355012	5356012	+	873.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111325.0	NM_008965	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28391859-3	chr7	28391378	28392378	+	873.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026042, intron 1 of 3)	PB1D9|SINE|Alu	812.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-69352332-3	chr10	69351855	69352855	+	873.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007659, intron 1 of 7)	intron (NM_007659, intron 1 of 7)	557.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57552797-3	chr16	57552377	57553377	+	873.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	3635.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	1.0	9.0	5.5	8.0	18.5	5.0
Merged-chr2-152346933-3	chr2	152346451	152347451	+	873.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033505, intron 1 of 4)	MER113|DNA|hAT-Charlie	1282.0	NR_033505	791417.0	Mm.451219	NR_033505	ENSMUSG00000068062	Gm14164	-	predicted gene 14164	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-14056326-3	chr12	14055826	14056826	+	873.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95712.0	NM_029007	105005.0	Mm.227253	NM_029007	ENSMUSG00000020607	Fam84a	2310003N02Rik|4731402F03Rik|AW125753|Nse1	family with sequence similarity 84, member A	protein-coding	2.0	0.0	5.5	0.0	0.0	0.0
Merged-chr10-127350803-3	chr10	127350284	127351284	+	873.861145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008382, exon 2 of 2)	exon (NM_008382, exon 2 of 2)	1064.0	NM_008382	16326.0	Mm.3510	NM_008382	ENSMUSG00000047492	Inhbe	-	inhibin beta-E	protein-coding	0.0	0.0	2.0	1.5	0.0	0.0
Merged-chr8-36612705-5	chr8	36612153	36613153	+	873.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 5 of 17)	intron (NM_001194940, intron 5 of 17)	1290.0	NM_015802	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	1.5	2.5	4.5	0.0	1.5	1.0
Merged-chr16-30775517-6	chr16	30775042	30776042	+	873.8352050000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	175819.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	38.5	38.0	25.0	28.5	32.5	24.5
Merged-chr8-84837316-2	chr8	84836816	84837816	+	873.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001297606, intron 7 of 8)	intron (NM_001297606, intron 7 of 8)	3349.0	NM_001297607	19358.0	Mm.255539	NM_009010	ENSMUSG00000003813	Rad23a	2310040P19Rik|AL024030|HR23A|mHR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding	2.0	0.0	0.0	1.5	0.0	0.0
Merged-chr13-6228521-3	chr13	6228014	6229014	+	873.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-319643.0	NM_145131	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67992651-1	chr15	67992151	67993151	+	873.8333130000001	f0_balb.idr	Intergenic	MTB|LTR|ERVL-MaLR	266205.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0.0	0.0	1.5	0.0	0.5	0.0
Merged-chr9-44231931-2	chr9	44231431	44232431	+	873.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 1 of 15)	Lx4A|LINE|L1	2115.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	35.5	163.5	125.5	44.5	171.0	97.5
Merged-chr7-12010690-3	chr7	12010134	12011134	+	873.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30665.0	NM_001166731	628946.0	Mm.484974	NM_001166731	ENSMUSG00000095864	Vmn1r77	Gm6935	vomeronasal 1 receptor 77	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-68154313-4	chr18	68153801	68154801	+	873.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-73645.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36947202-4	chr17	36946640	36947640	+	873.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001099632, exon 4 of 4)	exon (NM_001099632, exon 4 of 4)	4089.0	NM_001099632	386454.0	Mm.105324	NM_001099632	ENSMUSG00000036492	Rnf39	BC038661|Gm1786|Gm1787|Gm320|LIRF	ring finger protein 39	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr6-53612265-4	chr6	53611764	53612764	+	873.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 7 of 10)	intron (NM_001327821, intron 7 of 10)	38890.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.0	19.0	1.0	0.0	1.0	4.5
Merged-chr6-115901807-3	chr6	115901308	115902308	+	873.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167763, intron 15 of 28)	intron (NM_001167763, intron 15 of 28)	-30119.0	NM_145383	212541.0	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93579064-4	chr1	93578560	93579560	+	873.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145519, intron 12 of 26)	intron (NM_145519, intron 12 of 26)	56667.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-154040375-3	chr1	154039856	154040856	+	873.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	140427.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90518186-2	chr2	90517675	90518675	+	873.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-39001.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	20.0	35.5	49.5	28.0	57.5	46.0
Merged-chr6-127152619-2	chr6	127152119	127153119	+	873.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_040275, intron 1 of 1)	intron (NR_040275, intron 1 of 1)	-1571.0	NM_009829	12444.0	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110485309-4	chr12	110484790	110485790	+	873.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012023)	promoter-TSS (NM_012023)	-449.0	NM_001081457	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-6002659-4	chr13	6002176	6003176	+	873.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	X3_LINE|LINE|RTE-BovB	141187.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3844489-3	chr12	3844028	3845028	+	873.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 2 of 22)	intron (NM_007872, intron 2 of 22)	17716.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-58999896-4	chr4	58999399	59000399	+	873.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3294.0	NM_001033165	72429.0	Mm.317801	NM_001033165	ENSMUSG00000070972	Dnajc25	2010109C08Rik|2010203O07Rik	DnaJ heat shock protein family (Hsp40) member C25	protein-coding	0.0	0.0	3.0	0.0	0.0	0.0
Merged-chr13-52821104-2	chr13	52820604	52821604	+	873.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63899.0	NR_027893	105404.0	Mm.184173	NR_027893		BB123696	-	expressed sequence BB123696	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128355606-4	chr2	128355106	128356106	+	873.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028590, intron 1 of 2)	intron (NR_028590, intron 1 of 2)	73745.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	1.0	0.0	0.0	0.0	6.0	0.0
Merged-chr19-25188123-2	chr19	25187623	25188623	+	873.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 43 of 47)	intron (NM_028785, intron 43 of 47)	-48852.0	NM_181404	107351.0	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91081681-4	chr16	91081186	91082186	+	873.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12541.0	NM_028905	74387.0	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	5.5	0.0	0.0	5.5	0.0	0.0
Merged-chr11-70587181-4	chr11	70586670	70587670	+	873.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 1 of 30)	RMER15|LTR|ERVL	24289.0	NM_016713	50932.0	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	2.0	14.5	15.0	13.5	29.0	18.5
Merged-chr14-27096492-4	chr14	27095982	27096982	+	873.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134437, intron 11 of 12)	intron (NM_134437, intron 11 of 12)	-47511.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	2.5	6.5	5.0	0.0	5.5	4.0
Merged-chr15-55306499-4	chr15	55305999	55306999	+	873.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1251.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-32312881-4	chr13	32312367	32313367	+	873.74585	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146041, intron 1 of 10)	intron (NM_146041, intron 1 of 10)	25677.0	NM_146041	218138.0	Mm.247143	NM_146041	ENSMUSG00000038372	Gmds	BC031788|C87208	GDP-mannose 4, 6-dehydratase	protein-coding	5.5	2.0	2.5	0.5	2.0	6.0
Merged-chr9-124023209-3	chr9	124022699	124023699	+	873.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009914, intron 1 of 1)	intron (NM_009914, intron 1 of 1)	1228.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-107047771-4	chr7	107047304	107048304	+	873.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11668.0	NM_147034	259036.0	Mm.377801	NM_147034	ENSMUSG00000073898	Olfr713	MOR263-1|P3	olfactory receptor 713	protein-coding	15.5	9.0	12.0	7.5	10.0	6.0
Merged-chr1-152623955-3	chr1	152623437	152624437	+	873.7023929999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346118, intron 2 of 18)	LTR78B|LTR|ERV1	1280.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-9136298-3	chr10	9135806	9136806	+	873.6889039999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-250236.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr11-34220863-4	chr11	34220359	34221359	+	873.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-12770.0	NM_023907	14233.0	Mm.32926	NM_023907	ENSMUSG00000047861	Foxi1	5830401E05Rik|FREAC6|Fkh10|HFH-3|Hfh3	forkhead box I1	protein-coding	3.0	19.0	5.0	0.5	10.0	0.5
Merged-chr7-44358521-4	chr7	44358030	44359030	+	873.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001034115)	TTS (NM_001034115)	16500.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0.0	4.0	1.5	0.0	1.0	1.0
Merged-chr5-139789712-3	chr5	139789188	139790188	+	873.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1848.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	2.0	3.0	2.0	7.0	4.0	4.5
Merged-chr6-24516447-2	chr6	24515947	24516947	+	873.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1380.0	NM_172535	214704.0	Mm.61131	NM_172535	ENSMUSG00000046192	Iqub	4932408B21Rik|Trs4	IQ motif and ubiquitin domain containing	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr9-40732543-3	chr9	40732032	40733032	+	873.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	46568.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	3.5	1.5	1.0	61.5	101.0	90.5
Merged-chr18-53857823-3	chr18	53857328	53858328	+	873.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-4285.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	0.0	3.0	4.5	1.5	6.0	6.0
Merged-chr4-128668117-3	chr4	128667620	128668620	+	873.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	13418.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38225004-3	chr16	38224522	38225522	+	873.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 10 of 11)	MTE2a|LTR|ERVL-MaLR	69802.0	NM_010936	18171.0	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-104289655-3	chr11	104289310	104290310	+	873.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038609, intron 3 of 11)	intron (NM_001038609, intron 3 of 11)	58374.0	NM_001285454	17762.0	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-22856647-3	chr5	22856149	22857149	+	873.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359998, intron 1 of 3)	intron (NM_001359998, intron 1 of 3)	-109765.0	NR_027362	330052.0	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	48.0	106.0	61.0	8.5	1.0	2.5
Merged-chr1-189660009-3	chr1	189659508	189660508	+	873.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081363, exon 12 of 18)	exon (NM_001081363, exon 12 of 18)	28078.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65429401-3	chr5	65428917	65429917	+	873.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009466, intron 1 of 11)	intron (NM_009466, intron 1 of 11)	6425.0	NM_009466	22235.0	Mm.344831	NM_009466	ENSMUSG00000029201	Ugdh	Udpgdh	UDP-glucose dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5424596-3	chr13	5424117	5425117	+	873.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	433475.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127675929-2	chr10	127675429	127676429	+	873.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-1136.0	NM_173732	210035.0	Mm.251075	NM_173732	ENSMUSG00000040195	Nemp1	Tmem194|Tmem194a	nuclear envelope integral membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180726215-4	chr2	180725718	180726718	+	873.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183161, intron 1 of 12)	intron (NM_183161, intron 1 of 12)	879.0	NM_183161	228993.0	Mm.87189	NM_183161	ENSMUSG00000023393	Slc17a9	1700019H03Rik|BC019537|Vnut	solute carrier family 17, member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81390683-2	chr10	81390183	81391183	+	873.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2381.0	NM_001099917	72273.0	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53352206-2	chr11	53351706	53352706	+	873.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_033565, intron 1 of 20)	intron (NM_033565, intron 1 of 20)	1439.0	NM_033565	93736.0	Mm.395281	NM_033565	ENSMUSG00000049470	Aff4	AF5Q31|Alf4|Laf4l|MCEF	AF4/FMR2 family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4310041-4	chr19	4309565	4310565	+	873.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3843.0	NM_001290818	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117121735-5	chr2	117121284	117122284	+	873.6400150000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277256, intron 1 of 4)	CpG	713.0	NM_033524	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124049017-4	chr5	124048533	124049533	+	873.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-16773.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	34.0	42.5	37.0	9.5	22.5	28.0
Merged-chr18-60894373-4	chr18	60893880	60894880	+	873.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1O|LTR|ERVL-MaLR	-17860.0	NM_001038499	545260.0	Mm.20147	NM_001038499	ENSMUSG00000036412	Arsi	BC020108	arylsulfatase i	protein-coding	3.0	7.5	1.5	0.0	0.0	0.0
Merged-chr7-25205523-4	chr7	25205022	25206022	+	873.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207677, intron 4 of 4)	intron (NM_207677, intron 4 of 4)	12203.0	NR_106015	102466794.0		NR_106015	ENSMUSG00000098325	Mir7048	Gm27274|mmu-mir-7048	microRNA 7048	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101931668-2	chr5	101931168	101932168	+	873.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 15 of 66)	intron (NM_172882, intron 15 of 66)	138253.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96666879-4	chr15	96666388	96667388	+	873.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	-23975.0	NM_001166458	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53900174-4	chr19	53899703	53900703	+	873.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011050, intron 1 of 11)	intron (NM_011050, intron 1 of 11)	-3148.0	NM_001168492	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	5.0	12.0	14.5	2.0	20.0	11.5
Merged-chr17-26931941-4	chr17	26931425	26932425	+	873.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053173, intron 10 of 10)	intron (NM_053173, intron 10 of 10)	-1202.0	NM_001302397	21652.0	Mm.258953	NM_009343	ENSMUSG00000024193	Phf1	AW557215|D17Ertd455e|Pcl1|Phf2|Tctex3	PHD finger protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55652028-4	chr4	55651521	55652521	+	873.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119546.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	10.5	47.5	21.0	16.0	22.5	39.5
Merged-chr6-116472771-4	chr6	116472284	116473284	+	873.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11606.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-55910595-4	chr7	55910084	55911084	+	873.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 22 of 30)	intron (NM_011370, intron 22 of 30)	51909.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	177.0	400.0	223.5	156.5	334.0	223.5
Merged-chr6-47748525-3	chr6	47748034	47749034	+	873.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	4.5SRNA|scRNA|scRNA	-4303.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-25139518-2	chr19	25139019	25140019	+	873.5499880000001	f0_c57.idr|f1_c57bl6.idr	intron (NM_028785, intron 23 of 47)	intron (NM_028785, intron 23 of 47)	-97456.0	NM_181404	107351.0	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	26.5	80.0	51.5	9.5	30.5	20.0
Merged-chr10-10318991-4	chr10	10318517	10319517	+	873.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153297.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0.0	2.0	0.0	0.5	0.0	0.5
Merged-chr16-16912036-4	chr16	16911532	16912532	+	873.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176833, intron 3 of 7)	intron (NM_176833, intron 3 of 7)	15563.0	NM_176833	68606.0	Mm.230296	NM_176833	ENSMUSG00000026181	Ppm1f	1110021B16Rik|4933427B07Rik|CaMKPase|Popx2|mKIAA0015	protein phosphatase 1F (PP2C domain containing)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-119476118-2	chr6	119475618	119476618	+	873.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009525, intron 1 of 4)	intron (NM_009525, intron 1 of 4)	-3550.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27548278-2	chr3	27547778	27548778	+	873.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 5 of 26)	intron (NM_001356953, intron 5 of 26)	36717.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22008835-2	chr16	22008335	22009335	+	873.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357424)	promoter-TSS (NM_001357424)	-649.0	NM_029457	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164009233-3	chr2	164008720	164009720	+	873.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018753, intron 1 of 5)	intron (NM_018753, intron 1 of 5)	14023.0	NM_018753	54401.0	Mm.34319	NM_018753	ENSMUSG00000018326	Ywhab	1300003C17Rik|14-3-3b	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	protein-coding	0.0	15.0	11.0	3.0	8.5	5.0
Merged-chr19-16435064-2	chr19	16434564	16435564	+	873.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008137)	promoter-TSS (NM_008137)	-603.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49859679-4	chr16	49859190	49860190	+	873.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 1 of 9)	intron (NM_010581, intron 1 of 9)	4036.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105121153-4	chr8	105120654	105121654	+	873.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10646.0	NM_146213	234677.0	Mm.120297	NM_146213	ENSMUSG00000060560	Ces4a	Ces8	carboxylesterase 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-124800565-2	chr14	124800065	124801065	+	873.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-123438.0	NM_207667	14169.0	Mm.206362	NM_010201	ENSMUSG00000025551	Fgf14	FHF-4|Fhf4|Tg(tetO-MAPT*P301L)4510Kha|mFHF-4(1B)	fibroblast growth factor 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154946510-4	chr4	154946021	154947021	+	873.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14402.0	NM_010419	15208.0	Mm.137268	NM_010419	ENSMUSG00000048001	Hes5	bHLHb38	hes family bHLH transcription factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13299879-2	chr10	13299418	13300418	+	873.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	MIRb|SINE|MIR	24371.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	96.0	138.0	129.5	89.5	155.5	133.0
Merged-chr11-80179592-2	chr11	80179092	80180092	+	873.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172133)	TTS (NM_172133)	-4280.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	3.0	7.5	4.0	0.5	18.0	13.5
Merged-chr7-80381741-2	chr7	80381241	80382241	+	873.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010194, exon 11 of 19)	exon (NM_010194, exon 11 of 19)	6205.0	NM_010194	14159.0	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	0.0	0.0	1.5	2.0	0.0	0.0
Merged-chr18-11835148-4	chr18	11834640	11835640	+	873.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045421, intron 1 of 3)	intron (NR_045421, intron 1 of 3)	-4134.0	NM_001146287	63955.0	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	6.0	7.5	8.0	4.0	2.5	1.5
Merged-chr1-80615621-4	chr1	80615118	80616118	+	873.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 3 of 55)	intron (NM_175291, intron 3 of 55)	49734.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135671472-2	chr7	135670972	135671972	+	873.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316681, intron 12 of 17)	intron (NM_001316681, intron 12 of 17)	-19158.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-7907368-2	chr4	7906868	7907868	+	873.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	331673.0	NM_007592	12319.0	Mm.119320	NM_007592	ENSMUSG00000041261	Car8	AW546993|Ca8|Cals|Cals1|Carp|wdl	carbonic anhydrase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97417827-2	chr11	97417327	97418327	+	873.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32333.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135585648-2	chr1	135585148	135586148	+	873.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173437)	promoter-TSS (NM_173437)	-293.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-59153094-2	chr3	59152594	59153594	+	873.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045641, exon 1 of 1)	non-coding (NR_045641, exon 1 of 1)	398.0	NM_001287119	140795.0	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57339028-2	chr17	57338528	57339528	+	873.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-19658.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46532504-2	chr19	46532004	46533004	+	873.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019718, intron 5 of 5)	intron (NM_019718, intron 5 of 5)	30856.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-90463135-4	chr6	90462660	90463660	+	873.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355668, intron 1 of 2)	CpG	584.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9847661-2	chr13	9847161	9848161	+	873.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82340.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144200165-2	chr3	144199665	144200665	+	873.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161769, intron 2 of 4)	intron (NM_001161769, intron 2 of 4)	2167.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75964221-3	chr2	75963706	75964706	+	873.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	13973.0	NM_001081228	620631.0	Mm.389286	NM_001081228	ENSMUSG00000075272	Ttc30a2	-	tetratricopeptide repeat domain 30A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119818894-2	chr13	119818394	119819394	+	873.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11323.0	NM_001001449	380878.0	Mm.327311	NM_001001449	ENSMUSG00000094237	AF067063	-	cDNA sequence AF067063	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78579040-2	chr9	78578540	78579540	+	873.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172773, intron 1 of 10)	intron (NM_172773, intron 1 of 10)	9005.0	NM_172773	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83651281-3	chr6	83650784	83651784	+	873.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016751, intron 4 of 6)	L1_Mus1|LINE|L1	4832.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	68.0	147.5	127.5	81.5	114.5	113.5
Merged-chr4-138319711-3	chr4	138319211	138320211	+	873.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026880, intron 3 of 7)	intron (NM_026880, intron 3 of 7)	-3511.0	NR_105986	102466788.0		NR_105986	ENSMUSG00000099200	Mir7019	Gm27947|mmu-mir-7019	microRNA 7019	ncRNA	0.0	9.5	2.5	8.5	1.5	3.5
Merged-chr14-21847793-5	chr14	21847274	21848274	+	873.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_176925, exon 1 of 3)	5' UTR (NM_176925, exon 1 of 3)	196.0	NM_176925	319486.0	Mm.390671	NM_176925	ENSMUSG00000090564	A430057M04Rik	-	RIKEN cDNA A430057M04 gene	protein-coding	5.0	7.5	12.0	2.0	29.0	21.5
Merged-chr8-68391262-3	chr8	68390760	68391760	+	873.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172753, intron 5 of 9)	intron (NM_172753, intron 5 of 9)	22801.0	NR_038181	73609.0	Mm.443247	NR_038181	ENSMUSG00000085197	1700125H03Rik	4930510D22Rik	RIKEN cDNA 1700125H03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25941883-4	chr17	25941344	25942344	+	873.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001039038)	TTS (NM_001039038)	145.0	NM_001357592	14755.0	Mm.362054	NM_011822	ENSMUSG00000025728	Pigq	Gpi1|Gpi1h|Gpi1p|Gpih	phosphatidylinositol glycan anchor biosynthesis, class Q	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139230951-4	chr4	139230463	139231463	+	873.49585	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	36852.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	18.0	60.0	69.0	14.0	73.0	36.0
Merged-chr13-97544456-4	chr13	97543953	97544953	+	873.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15547.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	3.5	14.0	21.5	3.5	20.5	22.0
Merged-chr5-103817963-4	chr5	103817453	103818453	+	873.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133919, intron 6 of 19)	intron (NM_133919, intron 6 of 19)	63380.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-78317035-4	chr16	78316541	78317541	+	873.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025192, intron 1 of 6)	B3A|SINE|B2	15370.0	NM_001276263	13052.0	Mm.66222	NM_009988	ENSMUSG00000022865	Cxadr	2610206D03Rik|AU016810|AW553441|CAR|MCAR|MCVADR	coxsackie virus and adenovirus receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121585320-3	chr10	121584835	121585835	+	873.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019786, intron 1 of 20)	intron (NM_019786, intron 1 of 20)	1459.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-73116960-3	chr9	73116436	73117436	+	873.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198609, intron 3 of 5)	(T)n|Simple_repeat|Simple_repeat	3467.0	NM_198609	225215.0	Mm.379366	NM_198609	ENSMUSG00000032215	Rsl24d1	2410159K22Rik	ribosomal L24 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-105474545-3	chr11	105474059	105475059	+	873.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17824.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34281532-3	chr10	34281008	34282008	+	873.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009433)	promoter-TSS (NM_009433)	-682.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-26740501-4	chr18	26739963	26740963	+	873.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-986306.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13888019-4	chr8	13887505	13888505	+	873.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359059, intron 1 of 2)	intron (NM_001359059, intron 1 of 2)	2266.0	NM_001359059	66423.0	Mm.29063	NM_025556	ENSMUSG00000031458	Coprs	1700029I03Rik|2410022L05Rik|AA409325|AI256813|C85432|Copr5	coordinator of PRMT5, differentiation stimulator	protein-coding	4.0	1.5	0.0	0.0	0.0	0.0
Merged-chr2-17643129-3	chr2	17642633	17643633	+	873.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028757, intron 2 of 6)	L1MB3|LINE|L1	79619.0	NR_105847	102465964.0		NR_105847	ENSMUSG00000099161	Mir6419	Gm27713|mmu-mir-6419	microRNA 6419	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-17604546-4	chr15	17603982	17604982	+	873.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	765145.0	NR_045711	70886.0	Mm.399021	NR_045711	ENSMUSG00000098150	4921515E04Rik	-	RIKEN cDNA 4921515E04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173275720-5	chr2	173275151	173276151	+	873.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022995, intron 1 of 3)	intron (NM_022995, intron 1 of 3)	882.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71485953-4	chr8	71485454	71486454	+	873.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001164679, exon 1 of 17)	5' UTR (NM_001164679, exon 1 of 17)	113.0	NM_001164679	382014.0	Mm.260360	NM_001164679	ENSMUSG00000034863	Ano8	BC053460|Tmem16h	anoctamin 8	protein-coding	11.5	11.0	5.0	3.0	6.0	0.0
Merged-chr16-58524618-4	chr16	58524119	58525119	+	873.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357435)	promoter-TSS (NM_001357435)	-366.0	NM_001357434	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.0	3.5	12.5	4.0	1.5	2.5
Merged-chr2-77343422-3	chr2	77342894	77343894	+	873.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62802.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-74944882-4	chr7	74944383	74945383	+	873.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEd|LINE|L1	-85328.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118896433-4	chr2	118895980	118896980	+	873.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5135.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr4-129024963-4	chr4	129024475	129025475	+	873.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31751.0	NM_001033966	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114628307-2	chr5	114627807	114628807	+	873.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_022017, intron 12 of 15)	RSINE1|SINE|B4	30114.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0.0	0.0	3.5	0.0	3.0	1.0
Merged-chr8-72324494-9	chr8	72323904	72324904	+	873.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	5342.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	14.0	49.5	40.5	5.0	64.0	37.0
Merged-chr13-92968630-3	chr13	92968126	92969126	+	873.355591	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104678.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	32.0	40.5	9.5	1.0	5.5	0.0
Merged-chr8-70821734-4	chr8	70821289	70822289	+	873.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008353)	TTS (NM_008353)	13340.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	9.0	0.0	3.0	5.0	1.5	0.0
Merged-chr15-37114311-2	chr15	37113811	37114811	+	873.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106909.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-22007984-3	chr10	22007486	22008486	+	873.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13320.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34522250-6	chr19	34521753	34522753	+	873.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	5221.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-42876838-3	chr16	42876351	42877351	+	873.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1089.0	NR_040522	75722.0	Mm.243747	NR_040521	ENSMUSG00000075070	4932412D23Rik	Gm10809	RIKEN cDNA 4932412D23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143679779-4	chr5	143679284	143680284	+	873.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163548, intron 1 of 12)	intron (NM_001163548, intron 1 of 12)	28543.0	NM_001163548	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11077152-3	chr4	11076669	11077669	+	873.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085493)	promoter-TSS (NM_001085493)	-964.0	NM_001085493	76947.0	Mm.275265	NM_001085493	ENSMUSG00000050323	Ndufaf6	2310030N02Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43774367-4	chr13	43773869	43774869	+	873.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10743.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69364616-3	chr11	69364075	69365075	+	873.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146019, intron 2 of 39)	intron (NM_146019, intron 2 of 39)	4851.0	NM_146019	216848.0	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	41.5	58.0	42.0	37.5	47.5	55.0
Merged-chr10-120287917-2	chr10	120287417	120288417	+	873.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60857.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-17607360-3	chr1	17606843	17607843	+	873.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053191, intron 2 of 5)	intron (NM_053191, intron 2 of 5)	5442.0	NM_053191	94227.0	Mm.442452	NM_053191	ENSMUSG00000067780	Pi15	P24TI|P25TI|PI-15|SugarCrisp	peptidase inhibitor 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24059125-3	chr10	24058618	24059618	+	873.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER45C|DNA|hAT-Tip100	9608.0	NM_001010839	435207.0	Mm.377966	NM_001010839	ENSMUSG00000100950	Taar7f	taR-7f	trace amine-associated receptor 7F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-91023334-3	chr5	91022829	91023829	+	873.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4188.0	NM_053087	71920.0	Mm.197319	NM_053087	ENSMUSG00000035020	Epgn	2310069M11Rik|epigen	epithelial mitogen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81523782-2	chr10	81523282	81524282	+	873.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_010304, intron 1 of 6)	intron (NM_010304, intron 1 of 6)	443.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67538248-3	chr10	67537770	67538770	+	873.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010118, exon 1 of 2)	exon (NM_010118, exon 1 of 2)	340.0	NM_001347458	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55490631-3	chr14	55490129	55491129	+	873.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155103)	promoter-TSS (NR_155103)	-22.0	NR_155103	268747.0	Mm.151577	NM_001024645	ENSMUSG00000022211	Carmil3	Lrrc16b|mFLJ00240	capping protein regulator and myosin 1 linker 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-57427746-3	chr8	57427252	57428252	+	873.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-28171.0	NM_009136	20284.0	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25735592-4	chr14	25735102	25736102	+	873.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 2 of 3)	intron (NM_001101433, intron 2 of 3)	33254.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75464056-2	chr11	75463667	75464667	+	873.3095089999999	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029739)	TTS (NR_029739)	451.0	NR_029739	387141.0		NR_029739	ENSMUSG00000065529	Mir22	Mirn22|mmu-mir-22	microRNA 22	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-146495175-2	chr4	146494675	146495675	+	873.3000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR51B_Mm|LTR|ERVK?	-6825.0	NM_001243138	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-104868318-4	chr14	104867813	104868813	+	873.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015593, intron 2 of 5)	intron (NR_015593, intron 2 of 5)	229166.0	NR_015593	320249.0	Mm.320725	NR_015593	ENSMUSG00000115432	D130009I18Rik	-	RIKEN cDNA D130009I18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116534440-4	chr11	116533955	116534955	+	873.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011451)	promoter-TSS (NM_011451)	-285.0	NM_011451	20698.0	Mm.20944	NM_011451	ENSMUSG00000061878	Sphk1	1110006G24Rik|Sk1|Spk1	sphingosine kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36379503-3	chr18	36378995	36379995	+	873.288879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081365, intron 2 of 2)	intron (NM_001081365, intron 2 of 2)	30871.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95763118-4	chr15	95762620	95763620	+	873.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11529.0	NR_131148	629300.0	Mm.247258	NR_131148	ENSMUSG00000115699	Gm6961	EG629300	predicted gene 6961	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127558971-5	chr10	127558334	127559334	+	873.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008512, exon 46 of 89)	exon (NM_008512, exon 46 of 89)	-24275.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	4.0	8.5	2.5	0.0	10.0	0.5
Merged-chr9-118486515-3	chr9	118486021	118487021	+	873.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010136)	TTS (NM_010136)	8332.0	NM_010136	13813.0	Mm.200692	NM_010136	ENSMUSG00000032446	Eomes	C77258|TBR-2|Tbr2	eomesodermin	protein-coding	3.5	0.0	0.0	3.5	0.0	0.0
Merged-chr17-34186935-4	chr17	34186428	34187428	+	873.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013683)	promoter-TSS (NM_013683)	402.0	NM_013585	16912.0	Mm.390983	NM_013585	ENSMUSG00000096727	Psmb9	Lmp-2|Lmp2	proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	protein-coding	7.0	43.0	36.5	5.0	19.5	30.5
Merged-chr15-58933293-4	chr15	58932805	58933805	+	873.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023172)	promoter-TSS (NM_023172)	425.0	NM_175151	69694.0	Mm.383230	NM_175151	ENSMUSG00000050891	Tatdn1	2310079P03Rik|CDA11	TatD DNase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8715856-3	chr10	8715348	8716348	+	873.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	170222.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.0	0.0	0.0	1.0	9.0	1.0
Merged-chr19-41305766-2	chr19	41305228	41306228	+	873.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 9 of 16)	B1F1|SINE|Alu	-41724.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.0	7.5	7.0	2.0	11.0	17.0
Merged-chr19-4214421-7	chr19	4213882	4214882	+	873.238098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310039)	promoter-TSS (NM_001310039)	-7.0	NM_001310039	56708.0	Mm.347919	NM_019952	ENSMUSG00000040663	Clcf1	BSF-3|Bsf3|CLC|NNT-1	cardiotrophin-like cytokine factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113000920-6	chr6	113000404	113001404	+	873.2222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45398.0	NM_001355266	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113098744-4	chr12	113098307	113099307	+	873.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346696, intron 1 of 19)	CpG	529.0	NM_054081	116870.0	Mm.212577	NM_054081	ENSMUSG00000021144	Mta1	-	metastasis associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80931927-4	chr10	80931427	80932427	+	873.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008655, exon 4 of 4)	3' UTR (NM_008655, exon 4 of 4)	1836.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-42266146-4	chr6	42265632	42266632	+	873.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007610, intron 1 of 10)	intron (NM_007610, intron 1 of 10)	1147.0	NM_007610	12366.0	Mm.3921	NM_007610	ENSMUSG00000029863	Casp2	CASP-2|ICH-1|NEDD-2|Nedd2	caspase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166750799-4	chr2	166750300	166751300	+	873.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36968.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11288375-4	chr16	11287861	11288861	+	873.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25448.0	NM_011608	21935.0	Mm.12935	NM_011608	ENSMUSG00000022496	Tnfrsf17	BCM|BCMA|Tnfrsf13|Tnfrsf13a	tumor necrosis factor receptor superfamily, member 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43457136-3	chr1	43456644	43457644	+	873.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	11393.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99088432-4	chr10	99087938	99088938	+	873.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18644.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88447812-2	chr3	88447312	88448312	+	873.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013658, intron 10 of 14)	intron (NM_013658, intron 10 of 14)	-6861.0	NR_105978	102465611.0		NR_105978	ENSMUSG00000098655	Mir7011	Gm27677|mmu-mir-7011	microRNA 7011	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128628474-2	chr4	128627974	128628974	+	873.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9855.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	0.0	2.5	2.0	0.0	2.5	2.0
Merged-chr10-79666349-2	chr10	79665849	79666849	+	873.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_013591, exon 4 of 5)	exon (NM_013591, exon 4 of 5)	1790.0	NM_001358785	17123.0	Mm.391556	NM_013591	ENSMUSG00000020310	Madcam1	AV211525|MAdCAM-1	mucosal vascular addressin cell adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51558481-2	chr3	51557981	51558981	+	873.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_080793, intron 1 of 7)	ID_B1|SINE|B4	-1276.0	NR_033624	100039684.0	Mm.387178	NR_033624		5031434O11Rik	AI481280|Gm2370	RIKEN cDNA 5031434O11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-74689785-3	chr14	74689285	74690285	+	873.138855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172812, intron 2 of 2)	intron (NM_172812, intron 2 of 2)	-42512.0	NM_001285423	13885.0	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11460425-4	chr16	11459934	11460934	+	873.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	54786.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80704473-4	chr15	80703988	80704988	+	873.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6825.0	NM_144812	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94713904-4	chr16	94713396	94714396	+	873.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102477.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9916136-4	chr19	9915676	9916676	+	873.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16643.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	9.0	0.0	1.5	8.0	2.5	1.0
Merged-chr1-93486732-4	chr1	93486235	93487235	+	873.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159719, intron 1 of 12)	B2_Mm1a|SINE|B2	7674.0	NM_001159719	18000.0	Mm.428652	NM_010891	ENSMUSG00000026276	Sept2	AW208991|Nedd-5|Nedd5|mKIAA0158	septin 2	protein-coding	26.0	17.5	14.0	5.5	10.5	17.5
Merged-chr16-10451363-3	chr16	10450819	10451819	+	873.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3957.0	NM_001013778	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123145435-3	chr5	123144945	123145945	+	873.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040398, intron 4 of 16)	intron (NM_001040398, intron 4 of 16)	3252.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51561751-3	chr3	51561234	51562234	+	873.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080793)	promoter-TSS (NM_080793)	-911.0	NM_080793	73251.0	Mm.192111	NM_080793	ENSMUSG00000037111	Setd7	1600028F23Rik|H3K4MT|KMT7|Set7|Set7/9|mKIAA1717	SET domain containing (lysine methyltransferase) 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87527307-3	chr3	87526816	87527816	+	873.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_012051, exon 2 of 5)	exon (NM_012051, exon 2 of 5)	1738.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	0.0	8.5	6.0	4.5	7.5	11.5
Merged-chr15-90322876-4	chr15	90322345	90323345	+	873.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30865.0	NR_155426	102640415.0	Mm.394352	NR_155426	ENSMUSG00000116204	Gm36480	-	predicted gene, 36480	ncRNA	20.5	25.0	42.0	20.5	68.5	40.5
Merged-chr19-53763163-4	chr19	53762641	53763641	+	873.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170847, intron 1 of 13)	intron (NM_001170847, intron 1 of 13)	85835.0	NM_001170847	73713.0	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46153247-4	chr18	46152775	46153775	+	873.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45543.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	3.5	23.5	1.5	0.5	8.0	10.5
Merged-chr19-34637066-4	chr19	34636572	34637572	+	873.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053217, intron 1 of 2)	Lx5|LINE|L1	3671.0	NM_053217	112419.0	Mm.440727	NM_053217	ENSMUSG00000067297	Ifit1bl2	2010002M12Rik|AW412491|Ifit1b	interferon induced protein with tetratricopeptide repeats 1B like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34557690-3	chr18	34557210	34558210	+	873.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	15382.0	NM_009290	20890.0	Mm.558	NM_009290	ENSMUSG00000012282	Wnt8a	Stra11|Wnt-8A|Wnt-8D|Wnt8d	wingless-type MMTV integration site family, member 8A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180720531-3	chr1	180720031	180721031	+	873.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5512.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-16021313-3	chr3	16020812	16021812	+	873.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D5|LTR|ERVK	-14980.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73374497-4	chr14	73373997	73374997	+	873.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008410, intron 1 of 5)	intron (NM_008410, intron 1 of 5)	10792.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20699693-2	chr14	20699193	20700193	+	873.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028428, exon 3 of 3)	3' UTR (NM_028428, exon 3 of 3)	-3334.0	NM_025366	66121.0	Mm.246996	NM_025366	ENSMUSG00000063787	Chchd1	1110001O19Rik|2400010G13Rik|MRP-S37	coiled-coil-helix-coiled-coil-helix domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127763793-3	chr7	127763296	127764296	+	873.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172748, intron 9 of 10)	intron (NM_172748, intron 9 of 10)	-6019.0	NM_198424	269999.0	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73561775-4	chr2	73561245	73562245	+	873.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18593.0	NM_007389	11435.0	Mm.4583	NM_007389	ENSMUSG00000027107	Chrna1	AI385656|AI608266|Achr-1|Acra	cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84716156-1	chr2	84715656	84716656	+	873.0	f0_balb.idr	promoter-TSS (NM_144887)	promoter-TSS (NM_144887)	-992.0	NM_144887	228136.0	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	4.5	12.5	3.5	2.0	8.5	3.0
Merged-chr10-126982000-2	chr10	126981500	126982500	+	873.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113470, intron 1 of 7)	intron (NM_001113470, intron 1 of 7)	3283.0	NM_001113470	52468.0	Mm.29490	NM_146012	ENSMUSG00000078429	Ctdsp2	AI586070|D10Ertd73e|OS-4|OS4|SCP2	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43661474-2	chr7	43660974	43661974	+	873.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-1313.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127104862-2	chr10	127104362	127105362	+	873.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177614, intron 5 of 13)	B1_Mus1|SINE|Alu	16298.0	NM_177614	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61077359-3	chr18	61076867	61077867	+	873.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008809, intron 15 of 22)	intron (NM_008809, intron 15 of 22)	-28205.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140744197-2	chr5	140743697	140744697	+	873.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 4 of 7)	intron (NM_173405, intron 4 of 7)	20070.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-11052303-2	chr18	11051803	11052803	+	873.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010258)	promoter-TSS (NM_010258)	-207.0	NM_010258	14465.0	Mm.329287	NM_010258	ENSMUSG00000005836	Gata6	AA410133|GATA-6	GATA binding protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	3.0
Merged-chr8-110720952-2	chr8	110720452	110721452	+	873.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198625)	promoter-TSS (NM_198625)	-524.0	NM_198625	244654.0	Mm.490385	NM_198625	ENSMUSG00000033763	Mtss1l	ABBA	metastasis suppressor 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126516505-2	chr8	126516005	126517005	+	873.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-41440.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35918628-3	chr17	35918135	35919135	+	873.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357740)	promoter-TSS (NM_001357740)	-637.0	NM_001357740	52040.0	Mm.29385	NM_175934	ENSMUSG00000039220	Ppp1r10	2610025H06Rik|Cat53|D17Ertd808e|Fb19|Pnuts	protein phosphatase 1, regulatory subunit 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71375736-2	chr8	71375236	71376236	+	873.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010150, intron 3 of 3)	CpG	4438.0	NM_001293800	77090.0	Mm.440170	NM_029865	ENSMUSG00000002396	Ocel1	9430098E02Rik|AI326022|AI593544	occludin/ELL domain containing 1	protein-coding	0.0	1.5	2.0	0.0	4.5	2.0
Merged-chr9-44800144-3	chr9	44799638	44800638	+	873.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357383)	promoter-TSS (NM_001357383)	-891.0	NM_001357383	71687.0	Mm.41409	NM_027865	ENSMUSG00000002032	Tmem25	0610039J01Rik|AI429491	transmembrane protein 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-34771766-2	chr14	34771266	34772266	+	873.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-48370.0	NM_008166	14803.0	Mm.121569	NM_008166	ENSMUSG00000041078	Grid1	GluD1|GluRdelta1	glutamate receptor, ionotropic, delta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150066956-2	chr4	150066461	150067461	+	873.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1493.0	NR_029751	723848.0		NR_029751	ENSMUSG00000065493	Mir34a	Mirn34a|mir-34a|mmu-mir-34a	microRNA 34a	ncRNA	0.0	0.5	2.5	0.0	1.0	1.5
Merged-chr2-18959250-1	chr2	18958750	18959750	+	873.0	f0_balb.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	38871.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128371019-3	chr2	128370528	128371528	+	873.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028590, intron 1 of 2)	intron (NR_028590, intron 1 of 2)	58323.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	3.5	5.5	8.0	2.5	3.5	9.5
Merged-chr1-128711490-2	chr1	128710990	128711990	+	873.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119191.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	1.0	0.0	0.5	0.5	2.0	3.0
Merged-chr17-36930458-1	chr17	36929958	36930958	+	873.0	f0_balb.idr	intron (NR_045439, intron 2 of 2)	intron (NR_045439, intron 2 of 2)	6666.0	NR_045439	73286.0	Mm.426884	NR_045439	ENSMUSG00000092239	1700031A10Rik	-	RIKEN cDNA 1700031A10 gene	ncRNA	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr10-19010276-2	chr10	19009776	19010776	+	873.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166402, intron 1 of 7)	intron (NM_001166402, intron 1 of 7)	1687.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	15.0	54.5	37.5	19.0	52.0	43.5
Merged-chr8-8628318-2	chr8	8627818	8628818	+	873.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010111, intron 2 of 4)	intron (NM_010111, intron 2 of 4)	32455.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20875244-2	chr9	20874744	20875744	+	873.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175687)	TTS (NM_175687)	4466.0	NM_145154	70726.0	Mm.34019	NM_145154	ENSMUSG00000038742	Angptl6	6330404E11Rik|AGF|ARP3|Arp5	angiopoietin-like 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143054096-2	chr7	143053596	143054596	+	873.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110354)	promoter-TSS (NR_110354)	-410.0	NR_110354	97423.0	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-13721390-3	chr3	13720899	13721899	+	873.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357034, intron 1 of 7)	intron (NM_001357034, intron 1 of 7)	-68534.0	NR_040598	75203.0	Mm.490940	NR_040598		4930539N22Rik	-	RIKEN cDNA 4930539N22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140620901-2	chr5	140620401	140621401	+	873.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175274, exon 14 of 14)	3' UTR (NM_175274, exon 14 of 14)	13560.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43540322-1	chr4	43539822	43540822	+	873.0	f1_balb.idr	intron (NM_011602, intron 34 of 56)	intron (NM_011602, intron 34 of 56)	-16768.0	NM_001277875	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	0.0	0.0	0.0	0.0	3.5	0.0
Merged-chr16-10965568-2	chr16	10965068	10966068	+	873.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 2 of 3)	intron (NM_019980, intron 2 of 3)	27553.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115731476-3	chr5	115730978	115731978	+	873.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001080808, exon 1 of 9)	exon (NM_001080808, exon 1 of 9)	143.0	NM_001080808	75665.0	Mm.233914	NM_001080808	ENSMUSG00000041609	Bicdl1	2210403N09Rik|BICDR-1|Ccdc64	BICD family like cargo adaptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110912185-2	chr5	110911685	110912685	+	873.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	32382.0	NM_001267622	209683.0	Mm.295660	NM_024477	ENSMUSG00000033209	Ttc28	2310015L07Rik|6030435N04|AI428795|AI851761|BC002262|TPRBK	tetratricopeptide repeat domain 28	protein-coding	9.5	11.5	6.0	0.0	8.5	14.0
Merged-chr11-97436855-2	chr11	97436406	97437406	+	873.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-13254.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	2.5	0.0	0.0	0.0	6.0	1.5
Merged-chr7-46735068-2	chr7	46734568	46735568	+	873.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2465.0	NM_011316	20211.0	Mm.3489	NM_011316	ENSMUSG00000040017	Saa4	Saa-4|Saa-5	serum amyloid A 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6189535-2	chr19	6189035	6190035	+	873.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001165919, intron 1 of 10)	intron (NM_001165919, intron 1 of 10)	5125.0	NM_001165919	622554.0	Mm.159757	NM_001165919	ENSMUSG00000024786	Majin	1700123I01Rik	membrane anchored junction protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76229582-4	chr15	76229104	76230104	+	873.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201385)	promoter-TSS (NM_201385)	-107.0	NM_201385	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23750288-3	chr18	23749792	23750792	+	873.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_126066)	TTS (NR_126066)	2013.0	NR_126066	100502834.0	Mm.213614	NR_126066	ENSMUSG00000086287	Gm15972	-	predicted gene 15972	ncRNA	0.0	7.0	10.0	3.0	15.0	2.5
Merged-chr3-9753846-3	chr3	9753338	9754338	+	873.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 1 of 7)	intron (NM_053182, intron 1 of 7)	79841.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74258837-3	chr1	74258340	74259340	+	873.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 7 of 10)	U6|snRNA|snRNA	-19760.0	NM_174985	227289.0	Mm.246587	NM_174985	ENSMUSG00000064272	Gpbar1	BG37|GPCR|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88484960-2	chr3	88484460	88485460	+	873.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_019390, exon 6 of 10)	exon (NM_019390, exon 6 of 10)	8352.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68434895-2	chr11	68434395	68435395	+	873.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	2770.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166076120-4	chr2	166075653	166076653	+	873.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252579, intron 18 of 20)	intron (NM_001252579, intron 18 of 20)	79132.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.0	4.0	0.5	0.0	1.5	1.5
Merged-chr9-107667554-1	chr9	107667054	107668054	+	873.0	f1_c57bl6.idr	promoter-TSS (NM_023805)	promoter-TSS (NM_023805)	-155.0	NM_001199217	76257.0	Mm.296560	NM_023805	ENSMUSG00000010064	Slc38a3	0610012J02Rik|D9Ucla2|Nat1|Slc38-3|Sn1|Snat3|mNAT	solute carrier family 38, member 3	protein-coding	1.0	0.0	0.0	1.5	2.0	0.5
Merged-chr11-5444414-3	chr11	5443901	5444901	+	873.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001080924, exon 1 of 9)	exon (NM_001080924, exon 1 of 9)	446.0	NM_001080924	407821.0	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29243257-3	chr6	29242793	29243793	+	873.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26929.0	NM_001302934	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-23492628-2	chr5	23492120	23493120	+	873.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026984, intron 15 of 25)	RSINE1|SINE|B4	58191.0	NM_026984	69188.0	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	4.5	5.0	9.5	3.5	12.5	15.0
Merged-chr7-126701751-2	chr7	126701251	126702251	+	873.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301374, intron 4 of 10)	intron (NM_001301374, intron 4 of 10)	2469.0	NM_001301374	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-20371346-2	chr17	20370846	20371846	+	873.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001104569, intron 5 of 5)	ORR1A2-int|LTR|ERVL-MaLR	25921.0	NM_001104569	22312.0	Mm.484664	NM_001104569	ENSMUSG00000056910	Vmn2r107	V2r6|Vmn107	vomeronasal 2, receptor 107	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95989107-2	chr3	95988607	95989607	+	873.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_023320, exon 6 of 6)	exon (NM_023320, exon 6 of 6)	3597.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110646134-2	chr9	110645634	110646634	+	873.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183276, intron 1 of 53)	intron (NM_183276, intron 1 of 53)	8027.0	NM_183276	235627.0	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100202240-2	chr15	100201740	100202740	+	873.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001159361, exon 31 of 38)	exon (NM_001159361, exon 31 of 38)	-14204.0	NR_037311	100499528.0		NR_037311	ENSMUSG00000092752	Mir3473a	Mir3473|mir-3473a|mmu-mir-3473|mmu-mir-3473a	microRNA 3473a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120578802-3	chr9	120578264	120579264	+	873.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_073359)	TTS (NR_073359)	1433.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55497713-2	chr12	55497213	55498213	+	873.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5066.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47242445-4	chr19	47241952	47242952	+	872.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163480, intron 3 of 5)	intron (NM_001163480, intron 3 of 5)	13609.0	NM_001163480	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	4.0	12.0	5.5	2.0	0.0	0.5
Merged-chr11-68966097-4	chr11	68965578	68966578	+	872.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2053.0	NM_028048	71998.0	Mm.298622	NM_028048	ENSMUSG00000018740	Slc25a35	1810012H11Rik	solute carrier family 25, member 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116603936-4	chr7	116603418	116604418	+	872.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	99549.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118882740-4	chr10	118882239	118883239	+	872.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13836.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8665423-4	chr15	8664903	8665903	+	872.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148938, intron 3 of 9)	intron (NM_148938, intron 3 of 9)	45404.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120197386-4	chr1	120196875	120197875	+	872.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67905.0	NM_133186	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	6.0	0.0	3.5	10.0	0.0	3.5
Merged-chr5-53591229-4	chr5	53590769	53591769	+	872.9208369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359152, intron 1 of 9)	intron (NM_001359152, intron 1 of 9)	783.0	NM_001080927	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-63198882-4	chr17	63198361	63199361	+	872.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 7 of 8)	intron (NM_015794, intron 7 of 8)	114112.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95009376-3	chr8	95008818	95009818	+	872.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018882, intron 10 of 13)	intron (NM_018882, intron 10 of 13)	-8374.0	NM_173036	54672.0	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106364431-4	chr8	106363929	106364929	+	872.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	-26441.0	NM_021491	58994.0	Mm.23298	NM_021491	ENSMUSG00000031906	Smpd3	4631433G07Rik|AI427456|AW537966|fro|nSMase2	sphingomyelin phosphodiesterase 3, neutral	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154961514-4	chr4	154961011	154962011	+	872.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010419, exon 3 of 3)	exon (NM_010419, exon 3 of 3)	588.0	NM_010419	15208.0	Mm.137268	NM_010419	ENSMUSG00000048001	Hes5	bHLHb38	hes family bHLH transcription factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-23279958-4	chr1	23279443	23280443	+	872.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7674.0	NR_029533	387225.0		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124857608-3	chr6	124857107	124858107	+	872.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013534)	promoter-TSS (NM_013534)	80.0	NM_013534	14789.0	Mm.35708	NM_013534	ENSMUSG00000023191	P3h3	BC016431|Grcb|Leprel2	prolyl 3-hydroxylase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54927966-3	chr11	54927460	54928460	+	872.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271456, intron 9 of 18)	intron (NM_001271456, intron 9 of 18)	25106.0	NM_008161	14778.0	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171230368-3	chr1	171229870	171230870	+	872.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010185, intron 3 of 4)	RMER20A|LTR|ERVK	3979.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	32.0	112.5	45.5	28.5	87.5	74.5
Merged-chr1-45916325-3	chr1	45915800	45916800	+	872.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016917, intron 5 of 7)	intron (NM_016917, intron 5 of 7)	9294.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-13358993-4	chr12	13358517	13359517	+	872.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027706, intron 23 of 51)	intron (NM_027706, intron 23 of 51)	89890.0	NM_027706	71169.0	Mm.177520	NM_027706	ENSMUSG00000020576	Nbas	4933425L03Rik|Nag	neuroblastoma amplified sequence	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32007018-4	chr5	32006517	32007517	+	872.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 9 of 11)	MIRb|SINE|MIR	-129455.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	4.0	0.5	2.0	0.0	0.5	1.5
Merged-chr5-79812221-4	chr5	79811748	79812748	+	872.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MURVY-int|LTR|ERV1	-1208323.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	2.5	0.0	0.0	2.5	0.0	0.0
Merged-chr14-33313844-4	chr14	33313337	33314337	+	872.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 4 of 10)	intron (NM_153800, intron 4 of 10)	97014.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129058986-6	chr4	129058479	129059479	+	872.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 1 of 8)	intron (NM_029219, intron 1 of 8)	708.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97801767-4	chr11	97801254	97802254	+	872.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010688, intron 1 of 6)	intron (NM_010688, intron 1 of 6)	2189.0	NM_010688	16796.0	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94564584-4	chr11	94564060	94565060	+	872.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007689)	promoter-TSS (NM_007689)	-487.0	NM_007689	12643.0	Mm.440523	NM_007689	ENSMUSG00000039084	Chad	SLRR4A	chondroadherin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-97523288-4	chr16	97522803	97523803	+	872.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR9E|LTR|ERVK	-12778.0	NR_003508	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	26.5	17.0	6.5	0.0	5.0	4.0
Merged-chr13-20428838-2	chr13	20428334	20429334	+	872.833374	f0_balb.idr|f1_balb.idr	intron (NM_080288, intron 15 of 21)	intron (NM_080288, intron 15 of 21)	-44156.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	5.0	0.5	10.0	3.5	18.5	17.5
Merged-chr1-88576005-4	chr1	88575510	88576510	+	872.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24493.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112985943-3	chr5	112985423	112986423	+	872.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 1 of 20)	MTE2b|LTR|ERVL-MaLR	29615.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	0.0	0.0	0.0	1.0	0.0	6.5
Merged-chr1-182905931-3	chr1	182905449	182906449	+	872.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48839.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92974788-4	chr1	92974324	92975324	+	872.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271766)	promoter-TSS (NM_001271766)	-523.0	NM_001271766	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54627157-4	chr11	54626658	54627658	+	872.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 11 of 28)	intron (NM_001252494, intron 11 of 28)	31012.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97825908-2	chr15	97825408	97826408	+	872.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	5859.0	NM_019572	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114706512-4	chr11	114706020	114707020	+	872.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 6 of 13)	intron (NM_053273, intron 6 of 13)	-20892.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-38528897-3	chr13	38528400	38529400	+	872.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145367)	promoter-TSS (NM_145367)	-76.0	NM_001289598	105245.0	Mm.28622	NM_145367	ENSMUSG00000038991	Txndc5	AL022641|ERp46|PC-TRP	thioredoxin domain containing 5	protein-coding	2.0	2.0	0.0	0.0	0.0	0.0
Merged-chr2-126674104-3	chr2	126673619	126674619	+	872.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271470, intron 1 of 8)	intron (NM_001271470, intron 1 of 8)	1233.0	NM_001355109	14391.0	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93576140-3	chr10	93575661	93576661	+	872.822205	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175488, intron 13 of 15)	intron (NM_175488, intron 13 of 15)	-13252.0	NR_045810	74454.0	Mm.410794	NR_045810	ENSMUSG00000097407	4933408J17Rik	-	RIKEN cDNA 4933408J17 gene	ncRNA	5.0	4.0	9.0	0.0	8.0	3.5
Merged-chr6-86785013-4	chr6	86784546	86785546	+	872.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013471, intron 1 of 12)	B4A|SINE|B4	8538.0	NM_013471	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120491679-4	chr9	120491190	120492190	+	872.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026892)	promoter-TSS (NM_026892)	-916.0	NM_026892	68969.0	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-100438816-4	chr6	100438311	100439311	+	872.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-88589.0	NR_040525	73395.0	Mm.69413	NR_040525	ENSMUSG00000101553	1700049E22Rik	-	RIKEN cDNA 1700049E22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-130669257-4	chr7	130668754	130669754	+	872.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_206856, intron 3 of 20)	intron (NM_206856, intron 3 of 20)	-23302.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124769515-4	chr6	124769011	124770011	+	872.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001302555)	TTS (NM_001302555)	162.0	NM_001302642	13807.0	Mm.3913	NM_013509	ENSMUSG00000004267	Eno2	AI837106|D6Ertd375e|Eno-2|NSE	enolase 2, gamma neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117377964-3	chr5	117377464	117378464	+	872.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021539, exon 9 of 9)	3' UTR (NM_021539, exon 9 of 9)	11059.0	NM_028128	72151.0	Mm.27997	NM_028128	ENSMUSG00000029363	Rfc5	2610020K06Rik|2610209F07Rik|36.5kDa|36kDa|Recc5	replication factor C (activator 1) 5	protein-coding	2.0	4.0	0.0	0.0	2.5	1.0
Merged-chr4-122853278-4	chr4	122852793	122853793	+	872.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008917, intron 5 of 8)	intron (NM_008917, intron 5 of 8)	17066.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-39003591-4	chr13	39003087	39004087	+	872.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42712.0	NM_001170431	108652.0	Mm.255506	NM_134060	ENSMUSG00000021432	Slc35b3	4921526O06Rik|AI428480|CGI-19|PABST2|PAPST2	solute carrier family 35, member B3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124030625-2	chr5	124030125	124031125	+	872.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	1635.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0.0	11.5	7.5	12.0	9.0	2.5
Merged-chr2-44504489-4	chr2	44503993	44504993	+	872.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	357129.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73209503-4	chr14	73209004	73210004	+	872.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 20 of 26)	intron (NM_009029, intron 20 of 26)	-2653.0	NR_030459	751541.0		NR_030459	ENSMUSG00000076121	Mir687	Mirn687|mir-687|mmu-mir-687	microRNA 687	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-24677391-2	chr1	24676891	24677891	+	872.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1153.0	NM_026719	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52512968-3	chr3	52512473	52513473	+	872.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3991.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100855384-4	chr7	100854825	100855825	+	872.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177073, intron 1 of 10)	intron (NM_177073, intron 1 of 10)	8088.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43814407-7	chr1	43813917	43814917	+	872.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026430, intron 1 of 14)	intron (NM_026430, intron 1 of 14)	13291.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58026546-2	chr11	58026046	58027046	+	872.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_028451, intron 1 of 18)	intron (NM_028451, intron 1 of 18)	17482.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	15.5	7.5	2.0	0.0	7.0	1.5
Merged-chr1-64304217-4	chr1	64303730	64304730	+	872.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-182841.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45663318-4	chr17	45662607	45663607	+	872.7261960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198167, intron 19 of 23)	intron (NM_198167, intron 19 of 23)	-3798.0	NM_001013767	268958.0	Mm.426026	NM_001013767	ENSMUSG00000058626	Capn11	-	calpain 11	protein-coding	0.0	0.0	0.0	2.5	0.0	0.0
Merged-chr9-53635023-3	chr9	53634543	53635543	+	872.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027807, exon 8 of 19)	exon (NM_027807, exon 8 of 19)	-24693.0	NM_144784	110446.0	Mm.293233	NM_144784	ENSMUSG00000032047	Acat1	6330585C21Rik|Acat	acetyl-Coenzyme A acetyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29807572-4	chr11	29807071	29808071	+	872.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 17 of 41)	intron (NM_146016, intron 17 of 41)	18097.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-65128041-4	chr16	65127552	65128552	+	872.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-22268.0	NM_008310	15557.0	Mm.5040	NM_008310	ENSMUSG00000050783	Htr1f	Htr1eb	5-hydroxytryptamine (serotonin) receptor 1F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64072060-3	chr15	64071572	64072572	+	872.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11624.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32104330-4	chr5	32103844	32104844	+	872.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32128.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.0	3.5	0.0	0.0	1.5	0.0
Merged-chr6-72438077-7	chr6	72437599	72438599	+	872.6785890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046011)	promoter-TSS (NR_046011)	-584.0	NR_046011	78108.0	Mm.440743	NR_046011	ENSMUSG00000108591	Particl	4930414L22Rik|AI449819	promoter of Mat2a antisense radiation induced circulating long non-coding RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-123211086-3	chr7	123210587	123211587	+	872.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3779.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102276752-3	chr11	102276259	102277259	+	872.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_148953, exon 3 of 5)	exon (NM_148953, exon 3 of 5)	7936.0	NM_148953	217217.0	Mm.216432	NM_148953	ENSMUSG00000034768	Asb16	-	ankyrin repeat and SOCS box-containing 16	protein-coding	0.0	0.0	1.0	0.0	2.0	0.0
Merged-chr2-69670737-3	chr2	69670230	69671230	+	872.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081087, exon 1 of 6)	exon (NM_001081087, exon 1 of 6)	610.0	NM_001081087	228003.0	Mm.178784	NM_001081087	ENSMUSG00000075307	Klhl41	Gm112|Kbtbd10|SARCOSIN	kelch-like 41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-17815479-3	chr5	17814970	17815970	+	872.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159557, intron 5 of 15)	intron (NM_001159557, intron 5 of 15)	20426.0	NM_001159555	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135649252-2	chr7	135648752	135649752	+	872.6666869999999	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015548, exon 3 of 3)	non-coding (NR_015548, exon 3 of 3)	-2647.0	NM_001316681	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-30460084-4	chr6	30459578	30460578	+	872.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131049)	promoter-TSS (NR_131049)	-907.0	NR_131049	69337.0	Mm.396168	NR_131049	ENSMUSG00000085470	1700012C14Rik	-	RIKEN cDNA 1700012C14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118678465-4	chr9	118677884	118678884	+	872.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 11 of 27)	intron (NM_133721, intron 11 of 27)	-33308.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	4.0	5.5	6.0	1.5	0.0	0.0
Merged-chr16-87439033-2	chr16	87438533	87439533	+	872.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_016924, intron 1 of 4)	B1F2|SINE|Alu	1559.0	NM_016924	53858.0	Mm.162406	NM_016924	ENSMUSG00000041079	Rwdd2b	ORF5	RWD domain containing 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6654311-2	chr17	6653811	6654811	+	872.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166630, intron 1 of 4).2	intron (NM_001166630, intron 1 of 4).2	1520.0	NM_001166630	100040563.0	Mm.457381	NM_001166630	ENSMUSG00000000579	Dynlt1c	100040603|Dynlt1d	dynein light chain Tctex-type 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-40926197-4	chr8	40925683	40926683	+	872.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026840)	promoter-TSS (NM_026840)	-50.0	NM_026840	68797.0	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	12.0	12.5	14.5	0.0	0.0	1.5
Merged-chr11-83541528-2	chr11	83541028	83542028	+	872.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11010.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141416848-2	chr7	141416348	141417348	+	872.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2723.0	NM_172116	213350.0	Mm.290953	NM_172116	ENSMUSG00000051007	Gatd1	BC023835|D230016J19Rik|Pddc1	glutamine amidotransferase like class 1 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-61713392-2	chr2	61712892	61713892	+	872.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_021526, intron 1 of 11)	PB1D7|SINE|Alu	1698.0	NM_021526	59029.0	Mm.218198	NM_021526	ENSMUSG00000026914	Psmd14	2610312C03Rik|3200001M20Rik|AA986732|Pad1|Poh1|rpm11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-23712423-9	chr5	23711825	23712825	+	872.6611330000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015554, intron 1 of 4)	CpG	342.0	NR_038090	433855.0	Mm.205125	NR_015554	ENSMUSG00000105987	AI506816	-	expressed sequence AI506816	ncRNA	9.5	2.5	13.0	9.5	23.5	12.5
Merged-chr6-122820632-5	chr6	122820135	122821135	+	872.64447	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021899, exon 1 of 11)	5' UTR (NM_021899, exon 1 of 11)	451.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21995692-3	chr14	21995193	21996193	+	872.64447	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6092.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-58700153-3	chr2	58699670	58700670	+	872.633301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289660, intron 1 of 7)	intron (NM_001289660, intron 1 of 7)	-55014.0	NM_001289659	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50920107-4	chr15	50919620	50920620	+	872.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-30079.0	NM_032000	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35750892-2	chr17	35750327	35751327	+	872.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-21623.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	29.0	43.0	41.0	2.5	31.0	9.5
Merged-chr9-64784966-4	chr9	64784445	64785445	+	872.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26066.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79375747-4	chr8	79375294	79376294	+	872.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	23674.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142376263-4	chr5	142375766	142376766	+	872.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25231.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22814456-4	chr8	22813959	22814959	+	872.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8805.0	NM_001122820	64933.0	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-24617043-4	chr4	24616547	24617547	+	872.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033531, exon 10 of 10)	3' UTR (NM_001033531, exon 10 of 10)	120596.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	0.0	0.0	6.5	0.5	8.5	9.0
Merged-chr7-99164053-3	chr7	99163562	99164562	+	872.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026384, intron 4 of 7)	intron (NM_026384, intron 4 of 7)	18651.0	NM_026384	67800.0	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	4.0	7.5	10.0	7.5	0.5	3.0
Merged-chr1-36784809-3	chr1	36784343	36785343	+	872.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5859.0	NM_001289612	22637.0	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-144309481-3	chr1	144308981	144309981	+	872.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	-60377.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25112283-2	chr17	25111795	25112795	+	872.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_027880, intron 3 of 20)	intron (NM_027880, intron 3 of 20)	3610.0	NM_027880	71718.0	Mm.288702	NM_027880	ENSMUSG00000024170	Telo2	1200003M09Rik|AI415602|Tel2|mKIAA0683	telomere maintenance 2	protein-coding	23.0	26.5	31.5	1.0	6.0	14.5
Merged-chr8-48110113-4	chr8	48109631	48110631	+	872.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027759, exon 1 of 6)	non-coding (NR_027759, exon 1 of 6)	118.0	NM_001161515	320685.0	Mm.121549	NM_178788	ENSMUSG00000031562	Dctd	6030466N05Rik	dCMP deaminase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4588589-2	chr8	4588089	4589089	+	872.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24581.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-53743189-3	chr1	53742696	53743696	+	872.5833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36412.0	NM_001252070	627872.0	Mm.184692	NM_001252070	ENSMUSG00000096141	Dnah7a	Dnahc7|Dnahc7a|Gm992	dynein, axonemal, heavy chain 7A	protein-coding	1.0	0.5	0.5	0.0	0.0	0.0
Merged-chr10-37156474-4	chr10	37155976	37156976	+	872.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17550.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91180001-3	chr1	91179503	91180503	+	872.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178401, exon 1 of 3)	5' UTR (NM_178401, exon 1 of 3)	181.0	NM_001168392	51801.0	Mm.3272	NM_016894	ENSMUSG00000034353	Ramp1	9130218E19Rik	receptor (calcitonin) activity modifying protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-80579540-4	chr2	80579080	80580080	+	872.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290745, intron 1 of 31)	intron (NM_001290745, intron 1 of 31)	1602.0	NM_001290745	50884.0	Mm.25203	NM_016965	ENSMUSG00000027002	Nckap1	C79304|H19|Hem-2|Hem2|Nap1|mKIAA0587|mh19|p125Nap1	NCK-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5174609-3	chr17	5174108	5175108	+	872.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	179534.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-43107049-8	chr9	43106534	43107534	+	872.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1316.0	NM_027144	69632.0	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	2.5	13.0	5.0	9.5	5.5	10.0
Merged-chr1-51479911-2	chr1	51479411	51480411	+	872.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1512.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	2.5	4.5	0.5	0.5	3.0	0.0
Merged-chr16-57545954-4	chr16	57545384	57546384	+	872.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-3358.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-37766166-2	chr2	37765666	37766666	+	872.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10083.0	NM_001163566	241324.0	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117945216-2	chr11	117944716	117945716	+	872.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24150.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-45738507-2	chr11	45738007	45739007	+	872.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69576.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	2.5	9.5	8.0	2.5	8.5	8.0
Merged-chr13-100398796-4	chr13	100398296	100399296	+	872.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	54068.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	0.0	0.5	7.0	3.0	4.5	4.0
Merged-chr1-59899821-3	chr1	59899316	59900316	+	872.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13190.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47772939-4	chr9	47772361	47773361	+	872.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	45347.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	5.5	18.5	10.5	17.5	15.0	10.5
Merged-chr18-53160375-4	chr18	53159879	53160879	+	872.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15913.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	25.0	25.0	25.5	4.0	26.5	4.5
Merged-chr15-11997206-2	chr15	11996706	11997706	+	872.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1199.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-12705707-2	chr10	12705207	12706207	+	872.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 22 of 73)	intron (NM_011682, intron 22 of 73)	156028.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.0	0.0	0.5	0.0	0.0	2.0
Merged-chr1-89456229-2	chr1	89455729	89456729	+	872.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	1418.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-106912299-2	chr4	106911813	106912813	+	872.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198438, intron 1 of 16)	CpG	843.0	NM_023672	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	5.5	2.0	1.0	5.5	1.0	2.5
Merged-chr2-27547580-2	chr2	27547080	27548080	+	872.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	32433.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32185890-2	chr19	32185390	32186390	+	872.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	25123.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151039382-4	chr1	151038888	151039888	+	872.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-45953.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121370972-3	chr10	121370468	121371468	+	872.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 1 of 13)	B3|SINE|B2	5878.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0.0	20.0	5.0	3.0	6.0	3.5
Merged-chr16-18251185-2	chr16	18250685	18251685	+	872.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001080999, exon 5 of 12)	exon (NM_001080999, exon 5 of 12)	2302.0	NM_001081000	15547.0	Mm.271798	NM_008307	ENSMUSG00000022721	Trmt2a	Htf9c	TRM2 tRNA methyltransferase 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121909927-4	chr8	121909426	121910426	+	872.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033485, intron 1 of 1)	intron (NM_001033485, intron 1 of 1)	2093.0	NM_001033485	407789.0	Mm.436576	NM_001033485		BC048644	-	cDNA sequence BC048644	protein-coding	6.0	9.5	0.5	2.5	3.5	1.0
Merged-chr8-105637253-1	chr8	105636753	105637753	+	872.5	f0_balb.idr	promoter-TSS (NR_151743)	promoter-TSS (NR_151743)	97.0	NR_151743	546100.0	Mm.471801	NR_151742	ENSMUSG00000098120	Gm5914	-	predicted gene 5914	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33996318-4	chr16	33995824	33996824	+	872.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 51 of 59)	intron (NM_177357, intron 51 of 59)	-29286.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59534537-4	chr11	59534052	59535052	+	872.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-7017.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38693374-4	chr15	38692852	38693852	+	872.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025494)	TTS (NM_025494)	31448.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-8081332-4	chr5	8080819	8081819	+	872.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310439, intron 29 of 29)	intron (NM_001310439, intron 29 of 29)	24777.0	NM_001080974	109552.0	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76090615-2	chr15	76090115	76091115	+	872.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358359, intron 3 of 17)	CpG-4987	1075.0	NM_001358359	223649.0	Mm.101946	NM_144847	ENSMUSG00000075590	Nrbp2	BC011468	nuclear receptor binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-88599454-3	chr11	88598951	88599951	+	872.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054043, intron 5 of 13)	intron (NM_054043, intron 5 of 13)	-19800.0	NR_131025	68397.0	Mm.426889	NR_131025		0610039H22Rik	-	RIKEN cDNA 0610039H22 gene	ncRNA	4.0	5.5	5.0	5.5	15.0	1.5
Merged-chr12-109500090-2	chr12	109499590	109500590	+	872.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40906.0	NR_027652	17263.0	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-131862157-2	chr3	131861632	131862632	+	872.5	f0_c57.idr|f1_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-223160.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	5.5	29.0	7.0	2.0	3.0	1.0
Merged-chr16-77038372-2	chr16	77037872	77038872	+	872.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 3 of 23)	intron (NM_013918, intron 3 of 23)	24303.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27561799-2	chr2	27561299	27562299	+	872.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46652.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-144894414-5	chr4	144893912	144894912	+	872.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	1275.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70421996-2	chr9	70421496	70422496	+	872.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007630)	promoter-TSS (NM_007630)	-442.0	NM_007630	12442.0	Mm.22592	NM_007630	ENSMUSG00000032218	Ccnb2	CycB2	cyclin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-99649430-4	chr6	99648859	99649859	+	872.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025829, intron 2 of 6)	intron (NM_025829, intron 2 of 6)	17412.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69917269-2	chr11	69916769	69917769	+	872.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357906)	TTS (NM_001357906)	3235.0	NM_019726	56310.0	Mm.477738	NM_019726	ENSMUSG00000023170	Gps2	AI505953|GPS-2	G protein pathway suppressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-33951791-2	chr10	33951291	33952291	+	872.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153113)	promoter-TSS (NR_153113)	-532.0	NR_153113	72580.0	Mm.248081	NM_028287	ENSMUSG00000039531	Zufsp	2700019D07Rik	zinc finger with UFM1-specific peptidase domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64239514-2	chr5	64239014	64240014	+	872.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	9157.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	10.0	45.0	16.5	34.5	57.0	15.5
Merged-chr8-71562805-5	chr8	71562227	71563227	+	872.4933470000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145598, exon 2 of 2)	exon (NM_145598, exon 2 of 2)	-3856.0	NM_001100462	434325.0	Mm.33613	NM_001100462	ENSMUSG00000043664	Tmem221	-	transmembrane protein 221	protein-coding	0.0	1.5	0.5	0.0	6.5	0.0
Merged-chr14-54386145-3	chr14	54385647	54386647	+	872.477783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	23325.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	19.0	24.5	39.5	47.5	99.0	49.0
Merged-chr5-99373304-2	chr5	99372804	99373804	+	872.474976	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-120377.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102387528-2	chr15	102387028	102388028	+	872.474976	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-18788.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5323540-3	chr6	5323056	5324056	+	872.466675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B1|LTR|ERVK	-25183.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	0.0	1.0	1.5	0.0	0.5	0.0
Merged-chr15-73620388-4	chr15	73619888	73620888	+	872.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033219, intron 1 of 7)	intron (NM_001033219, intron 1 of 7)	-3064.0	NM_001357747	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102436109-4	chr12	102435525	102436525	+	872.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	B1_Mur4|SINE|Alu	3788.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	25.0	88.5	80.0	43.0	89.0	82.5
Merged-chr13-6471838-4	chr13	6471353	6472353	+	872.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76304.0	NM_145131	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110095825-3	chr11	110095354	110096354	+	872.455566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153145)	promoter-TSS (NM_153145)	83.0	NM_153145	217258.0	Mm.344148	NM_153145	ENSMUSG00000041828	Abca8a	-	ATP-binding cassette, sub-family A (ABC1), member 8a	protein-coding	9.0	18.0	21.0	14.5	40.0	51.0
Merged-chr14-25660222-4	chr14	25659739	25660739	+	872.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 22 of 23)	intron (NM_183208, intron 22 of 23)	-33931.0	NM_134084	105675.0	Mm.41656	NM_134084	ENSMUSG00000021868	Ppif	AW457192|CyP-D|CyP-F|CypD|PPIase	peptidylprolyl isomerase F (cyclophilin F)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77028788-3	chr11	77028284	77029284	+	872.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010484, intron 13 of 13)	intron (NM_010484, intron 13 of 13)	30187.0	NM_010484	15567.0	Mm.300318	NM_010484	ENSMUSG00000020838	Slc6a4	5-HTT|AI323329|Htt|Sert	solute carrier family 6 (neurotransmitter transporter, serotonin), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70815915-3	chr11	70815360	70816360	+	872.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3299.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	5.0	2.0	2.0	5.0	2.0	2.0
Merged-chr4-35105504-4	chr4	35104994	35105994	+	872.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-46561.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81857157-4	chr15	81856647	81857647	+	872.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020507, intron 1 of 1)	intron (NM_020507, intron 1 of 1)	1179.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	13.0	75.5	22.0	13.0	60.0	28.0
Merged-chr4-150495712-4	chr4	150495228	150496228	+	872.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 7 of 22)	intron (NM_001085492, intron 7 of 22)	156446.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	8.5	0.0	3.0	8.5	5.0	3.0
Merged-chr7-25205944-4	chr7	25205466	25206466	+	872.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207677, intron 4 of 4)	MIRb|SINE|MIR	11759.0	NR_106015	102466794.0		NR_106015	ENSMUSG00000098325	Mir7048	Gm27274|mmu-mir-7048	microRNA 7048	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-53676329-2	chr9	53675829	53676829	+	872.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-8822.0	NM_027807	75717.0	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101584491-3	chr7	101583987	101584987	+	872.4111330000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3326.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	50.5	109.5	84.5	11.5	9.0	1.0
Merged-chr3-19460849-3	chr3	19460344	19461344	+	872.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47751.0	NM_001163536	66326.0	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	1.0	8.0	0.5	3.0	0.0	7.0
Merged-chr7-44814831-2	chr7	44814394	44815394	+	872.400024	f1_balb.idr|f1_c57bl6.idr	intron (NR_033136, intron 2 of 2)	L2a|LINE|L2	764.0	NM_030693	107503.0	Mm.389890	NM_030693	ENSMUSG00000038539	Atf5	AFTA|Atf7|Atfx|ODA-10	activating transcription factor 5	protein-coding	0.0	4.0	7.0	0.0	2.5	4.0
Merged-chr10-82797048-3	chr10	82796605	82797605	+	872.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15018.0	NR_038042	70003.0	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	3.0	1.0	1.5	0.5	6.5	12.0
Merged-chr19-58132056-3	chr19	58131533	58132533	+	872.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_181415, exon 29 of 29)	3' UTR (NM_181415, exon 29 of 29)	80866.0	NR_049196	100885835.0		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	0.0	3.0	2.5	5.0	4.0	6.5
Merged-chr8-83997820-4	chr8	83997265	83998265	+	872.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081415)	promoter-TSS (NM_001081415)	93.0	NM_001081415	666704.0	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	0.5	3.0	4.0	0.0	3.0	2.0
Merged-chr4-25273456-4	chr4	25272951	25273951	+	872.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026194, intron 6 of 18)	L1MC4|LINE|L1	8370.0	NM_026194	67490.0	Mm.226295	NM_026194	ENSMUSG00000040359	Ufl1	1810074P20Rik|AI429228|Kiaa0776|Maxer|Rcad|mKIAA0776	UFM1 specific ligase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-30862088-4	chr3	30861582	30862582	+	872.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286994, intron 1 of 3)	intron (NM_001286994, intron 1 of 3)	6132.0	NM_001286994	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101571121-4	chr7	101570644	101571644	+	872.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11D|LTR|ERVK	10017.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	7.0	12.0	12.5	13.5	2.5	2.5
Merged-chr9-40616600-4	chr9	40616103	40617103	+	872.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69361.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	13.0	11.0	4.5	10.0	22.0	9.0
Merged-chr3-87369352-4	chr3	87368857	87369857	+	872.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009690, intron 5 of 5)	intron (NM_009690, intron 5 of 5)	-7030.0	NM_001310545	229499.0	Mm.255203	NM_153090	ENSMUSG00000059994	Fcrl1	A230020G22Rik|Bxmas1|Bxmh1|Bxmh1b|Fcrh1|Fcrh1l|Fcrh1s|Ifgp1	Fc receptor-like 1	protein-coding	1.5	18.5	17.0	0.0	14.0	8.5
Merged-chr3-103852724-4	chr3	103852223	103853223	+	872.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142960, intron 3 of 3)	intron (NM_001142960, intron 3 of 3)	-7072.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	6.5	12.0	24.5	9.5	19.5	5.5
Merged-chr14-74764340-3	chr14	74763856	74764856	+	872.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 19 of 19)	intron (NM_001033439, intron 19 of 19)	32059.0	NM_016903	13885.0	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-90390892-4	chr11	90390386	90391386	+	872.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172563)	promoter-TSS (NM_172563)	31.0	NM_172563	217082.0	Mm.158903	NM_172563	ENSMUSG00000003949	Hlf	E230015K02Rik	hepatic leukemia factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67597724-4	chr10	67597204	67598204	+	872.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25745.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27909785-3	chr17	27909268	27910268	+	872.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr	promoter-TSS (NM_026836)	promoter-TSS (NM_026836)	462.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	36.0	185.5	147.5	67.0	162.0	128.0
Merged-chr16-4630777-3	chr16	4630295	4631295	+	872.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030205, intron 21 of 27)	intron (NM_030205, intron 21 of 27)	-5849.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53855654-3	chr19	53855195	53856195	+	872.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170847, intron 12 of 13)	intron (NM_001170847, intron 12 of 13)	-36536.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	4.0	17.0	14.5	23.5	11.0	17.0
Merged-chr13-34078878-6	chr13	34078470	34079470	+	872.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009450)	promoter-TSS (NM_009450)	-962.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-105796195-3	chr12	105795700	105796700	+	872.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011112, intron 1 of 21)	intron (NM_011112, intron 1 of 21)	11503.0	NM_001347440	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	4.0	13.5	1.5	7.0	11.0	10.0
Merged-chr6-86545398-2	chr6	86544898	86545898	+	872.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NR_037961, intron 3 of 4)	intron (NR_037961, intron 3 of 4)	17997.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-4395580-2	chr10	4395080	4396080	+	872.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-7472.0	NM_001033466	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr2-158204437-2	chr2	158203937	158204937	+	872.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001131021, intron 10 of 15)	intron (NM_001131021, intron 10 of 15)	12429.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97083034-3	chr11	97082527	97083527	+	872.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19259.0	NR_106181	102465893.0		NR_106181	ENSMUSG00000098769	Mir8103	Gm27841|mmu-mir-8103	microRNA 8103	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118667625-3	chr9	118667111	118668111	+	872.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 8 of 27)	intron (NM_133721, intron 8 of 27)	-44081.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	14.5	22.0	14.0	3.0	7.5	5.0
Merged-chr9-61435310-3	chr9	61434825	61435825	+	872.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62959.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88327687-3	chr7	88327167	88328167	+	872.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49582.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	5.5	19.0	4.5	6.0	1.0	2.0
Merged-chr4-6513105-4	chr4	6512583	6513583	+	872.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58812.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127759945-4	chr7	127759459	127760459	+	872.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172748, intron 7 of 10)	intron (NM_172748, intron 7 of 10)	-9856.0	NM_198424	269999.0	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59760309-4	chr15	59759808	59760808	+	872.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34651.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.0	0.0	1.5	0.0	9.5	5.0
Merged-chr15-101326030-2	chr15	101325530	101326530	+	872.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	32818.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120939685-2	chr11	120939185	120940185	+	872.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6813.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57481576-2	chr17	57481076	57482076	+	872.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 21 of 22)	MTE2b|LTR|ERVL-MaLR	63738.0	NM_001104591	224916.0	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26139221-2	chr2	26138721	26139721	+	872.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001256522, intron 1 of 1)	intron (NM_001256522, intron 1 of 1)	322.0	NM_001256522	109299.0	Mm.389259	NM_001256521		Tmem250-ps	AI551216|C330006A16Rik	transmembrane protein 250, pseudogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98018947-4	chr11	98018438	98019438	+	872.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159320)	promoter-TSS (NM_001159320)	-566.0	NM_001159320	12295.0	Mm.41252	NM_031173	ENSMUSG00000020882	Cacnb1	CAB1|Cchb1|Cchlb1	calcium channel, voltage-dependent, beta 1 subunit	protein-coding	5.5	4.5	3.0	4.5	0.0	1.0
Merged-chr8-119557310-2	chr8	119556810	119557810	+	872.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_019709, intron 1 of 23)	(CA)n|Simple_repeat|Simple_repeat	1451.0	NM_001167910	56453.0	Mm.206934	NM_019709	ENSMUSG00000031835	Mbtps1	0610038M03Rik|AV003995|S1P|SKI-1|Ski1|mKIAA0091	membrane-bound transcription factor peptidase, site 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34001211-4	chr17	34000682	34001682	+	872.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347346)	promoter-TSS (NM_001347346)	-835.0	NM_001347346	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	89.0	288.5	100.5	28.0	81.0	70.0
Merged-chr10-111507705-4	chr10	111507218	111508218	+	872.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009344, intron 1 of 1)	intron (NM_009344, intron 1 of 1)	1432.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80947480-2	chr12	80946980	80947980	+	872.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001079694, intron 3 of 7)	intron (NM_001079694, intron 3 of 7)	1981.0	NM_001347415	20384.0	Mm.43331	NM_009159	ENSMUSG00000021134	Srsf5	Sfrs5	serine/arginine-rich splicing factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96162275-2	chr3	96161775	96162775	+	872.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_181409, intron 1 of 16)	intron (NM_181409, intron 1 of 16)	305.0	NM_181409	194126.0	Mm.268536	NM_181409	ENSMUSG00000045934	Mtmr11	AI035306|BC051083|Cra	myotubularin related protein 11	protein-coding	0.0	4.5	4.5	0.0	5.5	4.5
Merged-chr9-88966284-4	chr9	88965763	88966763	+	872.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	9343.0	NM_009742	12044.0	Mm.425593	NM_009742	ENSMUSG00000102037	Bcl2a1a	A1|BB218357|Bcl2a1|Bfl-1|Hbpa1	B cell leukemia/lymphoma 2 related protein A1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191403310-4	chr1	191402830	191403830	+	872.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6289.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	6.5	5.0	3.0	4.5	14.0	8.0
Merged-chr17-44789171-3	chr17	44788629	44789629	+	872.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178652, intron 2 of 11)	intron (NM_178652, intron 2 of 11)	11963.0	NM_178652	109115.0	Mm.431327	NM_178652	ENSMUSG00000038954	Supt3	2310066G22Rik|AI315192|SPT3|SPT3L|Supt3h	suppressor of Ty 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119436600-3	chr11	119436074	119437074	+	872.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46102.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.0	0.0	1.5	2.0	14.0	5.0
Merged-chr2-28539377-3	chr2	28538861	28539861	+	872.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145836, intron 1 of 17)	intron (NM_001145836, intron 1 of 17)	5897.0	NM_001145836	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133816383-3	chr4	133815914	133816914	+	872.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58317.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	37.5	78.0	53.5	88.5	93.0	67.0
Merged-chr1-180771491-4	chr1	180770996	180771996	+	872.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42109.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117439309-4	chr2	117438803	117439803	+	872.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96426.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67973640-4	chr7	67973141	67974141	+	872.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 1 of 20)	intron (NM_010513, intron 1 of 20)	21384.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123155622-4	chr5	123155133	123156133	+	872.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040398, intron 7 of 16)	B3|SINE|B2	13440.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73238620-4	chr14	73238078	73239078	+	872.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175116, exon 1 of 1)	5' UTR (NM_175116, exon 1 of 1)	687.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100463916-4	chr15	100463412	100464412	+	872.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-5099.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	1.5	3.0	0.5	1.0	6.0	0.0
Merged-chr11-120660667-5	chr11	120660105	120661105	+	872.179993	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175263, intron 1 of 11)	CpG-2953	232.0	NM_175263	77583.0	Mm.32839	NM_175263	ENSMUSG00000042988	Notum	5730593N15Rik	notum palmitoleoyl-protein carboxylesterase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31087104-3	chr6	31086602	31087602	+	872.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24009.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120926407-3	chr9	120925908	120926908	+	872.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040753, intron 2 of 2)	intron (NR_040753, intron 2 of 2)	4394.0	NR_040753	78060.0	Mm.463884	NR_040753	ENSMUSG00000086365	4930593C16Rik	-	RIKEN cDNA 4930593C16 gene	ncRNA	0.0	0.0	1.5	0.0	0.0	1.0
Merged-chr8-25602815-6	chr8	25602333	25603333	+	872.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001735, intron 1 of 9)	intron (NM_001001735, intron 1 of 9)	549.0	NM_001308482	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-81796769-3	chr12	81796254	81797254	+	872.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR18-int|LTR|ERVK	-15584.0	NM_001174107	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5597089-3	chr2	5596657	5597657	+	872.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	78889.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	7.5	12.5	15.0	7.0	19.5	12.5
Merged-chr2-52423447-6	chr2	52423017	52424017	+	872.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182994, intron 1 of 5)	intron (NM_182994, intron 1 of 5)	1357.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24964519-4	chr16	24964017	24965017	+	872.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-95122.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-105297497-3	chr14	105297021	105298021	+	872.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029561, intron 4 of 7)	intron (NM_029561, intron 4 of 7)	38848.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	22.0	10.0	12.0	58.0	145.0	95.0
Merged-chr4-43052877-4	chr4	43052392	43053392	+	872.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6061.0	NM_021468	22249.0	Mm.128892	NM_021468	ENSMUSG00000028456	Unc13b	Munc13-1|Munc13-2|Unc13a|Unc13h1|Unc13h2	unc-13 homolog B (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	3.0	0.0
Merged-chr5-108034311-3	chr5	108033784	108034784	+	872.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31390.0	NM_001359088	17765.0	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43384924-3	chr5	43384403	43385403	+	872.166626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130666.0	NM_001135172	109323.0	Mm.275553	NM_175425	ENSMUSG00000061535	C1qtnf7	5530401N20Rik|8430425G24Rik|Ctrp7	C1q and tumor necrosis factor related protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-34662428-4	chr14	34661942	34662942	+	872.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8868.0	NR_029647	723831.0		NR_029647	ENSMUSG00000094316	Mir297-1	Mir297a-1|Mirn297-1	microRNA 297-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-31917880-2	chr11	31917380	31918380	+	872.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290676, intron 3 of 8)	MER44D|DNA|TcMar-Tigger	46940.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	0.0	4.0	13.5	13.0	23.5	1.5
Merged-chr3-117981258-2	chr3	117980758	117981758	+	872.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-112322.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84646820-4	chr10	84646325	84647325	+	872.142822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027423, exon 10 of 28)	exon (NM_027423, exon 10 of 28)	24388.0	NM_027423	70428.0	Mm.335007	NM_027423	ENSMUSG00000034453	Polr3b	2700078H01Rik|A330032P03Rik|C85372|RPC2	polymerase (RNA) III (DNA directed) polypeptide B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-102021842-3	chr13	102021337	102022337	+	872.1333619999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-253620.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-68392112-4	chr15	68391604	68392604	+	872.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50815.0	NR_029718	387228.0		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	0.5	3.0	1.5	0.5	3.0	1.0
Merged-chr14-14351669-4	chr14	14351103	14352103	+	872.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008369, intron 9 of 11)	intron (NM_008369, intron 9 of 11)	5108.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-84150846-4	chr7	84150365	84151365	+	872.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133722, intron 1 of 2)	intron (NM_133722, intron 1 of 2)	1028.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90221867-4	chr16	90221353	90222353	+	872.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011434, intron 1 of 4)	intron (NM_011434, intron 1 of 4)	1111.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139781026-2	chr5	139780526	139781526	+	872.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	ZP3AR|Satellite|Satellite	-5348.0	NM_026748	68510.0	Mm.292942	NM_026748	ENSMUSG00000029547	Ints1	1110015K06Rik	integrator complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107468424-4	chr11	107467883	107468883	+	872.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	2337.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68502633-4	chr11	68502140	68503140	+	872.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081566)	promoter-TSS (NM_001081566)	-379.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100317470-4	chr13	100316985	100317985	+	872.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010871)	promoter-TSS (NM_010871)	203.0	NM_021545	53880.0	Mm.218759	NM_021545		Naip7	Birc1g|Naip-rs4B|Naip6	NLR family, apoptosis inhibitory protein 7	protein-coding	7.0	33.0	41.5	15.0	47.5	38.0
Merged-chr13-112751975-4	chr13	112751474	112752474	+	872.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48803.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-117690060-4	chr14	117689578	117690578	+	872.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011821, intron 4 of 8)	Charlie5|DNA|hAT-Charlie	263769.0	NR_105747	102465148.0		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	0.0	7.0	5.5	1.0	0.0	0.0
Merged-chr17-50134551-2	chr17	50134012	50135012	+	872.116699	f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	55985.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	6.0	11.5	11.0	13.5	8.5	1.0
Merged-chr1-152556204-3	chr1	152555696	152556696	+	872.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 5 of 17)	intron (NM_016846, intron 5 of 17)	69021.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88349384-3	chr17	88348917	88349917	+	872.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-91287.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	4.5	3.0	6.5	1.0	2.0	1.5
Merged-chr3-132033988-4	chr3	132033495	132034495	+	872.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51297.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0.5	29.5	10.0	4.0	33.0	8.5
Merged-chr8-104099179-4	chr8	104098669	104099669	+	872.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131138, intron 1 of 2)	B3|SINE|B2	-2456.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-91170084-4	chr13	91169583	91170583	+	872.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025770, intron 2 of 7)	intron (NM_025770, intron 2 of 7)	53904.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103872139-4	chr2	103871631	103872631	+	872.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28820.0	NR_131913	100996933.0	Mm.394449	NR_131913		Lincred1	-	long intergenic non-protein coding RNA of erythroid differentiation 1	ncRNA	0.5	2.5	2.0	1.5	0.0	3.0
Merged-chr5-130204695-4	chr5	130204123	130205123	+	872.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199059, intron 4 of 8)	intron (NM_001199059, intron 4 of 8)	-15121.0	NM_001081394	71667.0	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-103659796-2	chr5	103659296	103660296	+	872.025024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4064.0	NM_001163550	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137748720-6	chr5	137748277	137749277	+	872.013916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023910, intron 2 of 4)	intron (NM_023910, intron 2 of 4)	2808.0	NM_029805	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35839805-2	chr16	35839305	35840305	+	872.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039530, intron 14 of 16)	intron (NM_001039530, intron 14 of 16)	31577.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-99240317-2	chr3	99239817	99240817	+	872.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	GC_rich|Low_complexity|Low_complexity	-13443.0	NM_009323	21384.0	Mm.88761	NM_009323	ENSMUSG00000027868	Tbx15	Tbx14|Tbx8|de	T-box 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-82631334-2	chr16	82630834	82631834	+	872.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	1430637.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	8.0	0.0
Merged-chr6-83637319-4	chr6	83636783	83637783	+	872.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18833.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	87.5	172.0	147.5	59.5	184.0	163.0
Merged-chr11-109269863-3	chr11	109269397	109270397	+	872.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165934, intron 7 of 16)	intron (NM_001165934, intron 7 of 16)	28284.0	NM_001165934	19739.0	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding	0.0	7.5	7.5	0.0	2.5	5.5
Merged-chr4-128756308-4	chr4	128755797	128756797	+	872.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2961.0	NM_001009819	215493.0	Mm.300900	NM_001009819	ENSMUSG00000028794	A3galt2	Gm433|iGb3|iGb3S	alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase)	protein-coding	5.0	0.5	5.5	0.0	6.0	4.5
Merged-chr8-72305911-1	chr8	72305411	72306411	+	872.0	f1_balb.idr	Intergenic	RMER19A|LTR|ERVK	-13151.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	3.5	8.0	5.5	16.0	69.0	34.5
Merged-chr15-57885989-3	chr15	57885498	57886498	+	872.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024207, intron 1 of 7)	intron (NM_024207, intron 1 of 7)	6420.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-103337892-3	chr12	103337419	103338419	+	872.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 3 of 9)	intron (NM_023049, intron 3 of 9)	18082.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-22866179-2	chr17	22865679	22866679	+	872.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177358, intron 1 of 5)	intron (NM_177358, intron 1 of 5)	955.0	NM_177358	240041.0	Mm.328828	NM_177358	ENSMUSG00000059142	Zfp945	A630033E08Rik|C730040L01Rik	zinc finger protein 945	protein-coding	28.0	23.0	14.5	26.0	58.5	20.5
Merged-chr4-108835014-2	chr4	108834514	108835514	+	872.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356361)	promoter-TSS (NM_001356361)	336.0	NM_025334	66073.0	Mm.159965	NM_025334	ENSMUSG00000028567	Txndc12	0610040B21Rik|ERp16|ERp19	thioredoxin domain containing 12 (endoplasmic reticulum)	protein-coding	16.5	30.0	27.0	8.5	32.0	24.5
Merged-chr4-133195503-1	chr4	133195003	133196003	+	872.0	f1_c57bl6.idr	promoter-TSS (NR_105984)	promoter-TSS (NR_105984)	-152.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	1.5	1.5	2.0	0.0	0.0	2.5
Merged-chr8-123950321-3	chr8	123949843	123950843	+	872.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1078.0	NM_172288	234865.0	Mm.267812	NM_172288	ENSMUSG00000039509	Nup133	mermaid	nucleoporin 133	protein-coding	38.0	116.0	55.5	27.0	101.5	60.5
Merged-chr17-30212665-2	chr17	30212165	30213165	+	872.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	183515.0	NR_030688	623169.0	Mm.440508	NR_030688		Gm6402	EG623169	ribosomal protein S17 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-48619251-3	chr2	48618775	48619775	+	872.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-194834.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64241747-2	chr15	64241247	64242247	+	872.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	ORR1F|LTR|ERVL-MaLR	70926.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55463601-2	chr13	55463101	55464101	+	872.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001030296)	promoter-TSS (NM_001030296)	-666.0	NM_001030296	432763.0	Mm.315457	NM_001030296	ENSMUSG00000034686	Prr7	XM_484263	proline rich 7 (synaptic)	protein-coding	0.0	6.0	0.0	1.5	0.0	0.0
Merged-chr12-80116490-3	chr12	80115984	80116984	+	872.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3471.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	33.0	71.5	41.5	47.0	54.0	53.0
Merged-chr11-50207343-3	chr11	50206847	50207847	+	872.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290769, intron 3 of 7)	intron (NM_001290769, intron 3 of 7)	3473.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180044373-2	chr2	180043873	180044873	+	872.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178750, intron 1 of 10)	intron (NM_178750, intron 1 of 10)	1890.0	NM_178750	269397.0	Mm.63068	NM_178750	ENSMUSG00000039086	Ss18l1	A230053O16Rik|CREST	SS18, nBAF chromatin remodeling complex subunit like 1	protein-coding	0.0	0.0	0.5	0.0	7.0	1.0
Merged-chr1-35810227-2	chr1	35809727	35810727	+	872.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-258173.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-57730514-4	chr14	57730014	57731014	+	872.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153382, intron 1 of 1)	intron (NM_153382, intron 1 of 1)	3904.0	NM_153382	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57504009-3	chr9	57503535	57504535	+	872.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133982)	promoter-TSS (NM_133982)	-67.0	NM_133982	102614.0	Mm.274421	NM_133982	ENSMUSG00000062309	Rpp25	AI851155	ribonuclease P/MRP 25 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-66906045-2	chr11	66905545	66906545	+	872.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033539, intron 3 of 3)	intron (NR_033539, intron 3 of 3)	-5946.0	NM_178656	193003.0	Mm.440256	NM_178656	ENSMUSG00000048070	Pirt	A530088H08Rik	phosphoinositide-interacting regulator of transient receptor potential channels	protein-coding	3.5	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72475932-2	chr8	72475432	72476432	+	872.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138585)	promoter-TSS (NM_138585)	-699.0	NM_138585	27967.0	Mm.30136	NM_138585	ENSMUSG00000052488	Cherp	5730408I11Rik|D8Wsu96e|DAN16|Scaf6	calcium homeostasis endoplasmic reticulum protein	protein-coding	54.0	111.5	98.0	41.0	121.0	61.0
Merged-chr2-44345587-3	chr2	44345104	44346104	+	872.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 13 of 14)	intron (NM_001301831, intron 13 of 14)	-280280.0	NR_040622	320872.0	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-60822020-2	chr5	60821520	60822520	+	872.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-836018.0	NR_040682	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61470263-3	chr11	61469761	61470761	+	872.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15170.0	NM_001347545	76293.0	Mm.272278	NM_029568	ENSMUSG00000042436	Mfap4	1110007F23Rik	microfibrillar-associated protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43381061-1	chr4	43380561	43381561	+	872.0	f1_balb.idr	promoter-TSS (NM_001037709)	promoter-TSS (NM_001037709)	-921.0	NM_001037709	100213.0	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	28.0	36.5	26.5	26.0	43.5	31.5
Merged-chr19-16331135-2	chr19	16330635	16331635	+	872.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 3 of 6)	intron (NM_008139, intron 3 of 6)	-16131.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5976411-2	chr17	5975911	5976911	+	872.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151772, intron 2 of 25)	intron (NR_151772, intron 2 of 25)	825.0	NM_011523	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102329228-3	chr4	102328738	102329738	+	872.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177983, intron 1 of 5)	intron (NM_001177983, intron 1 of 5)	74299.0	NM_019840	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.0	0.0	0.0	0.0	0.0	5.0
Merged-chr17-35154165-1	chr17	35153665	35154665	+	872.0	f1_balb.idr	exon (NM_020027, exon 19 of 31)	exon (NM_020027, exon 19 of 31)	10712.0	NM_001199044	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	7.0	0.0	7.5	7.0	0.0	7.5
Merged-chr17-35166905-3	chr17	35166398	35167398	+	872.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2021.0	NM_020027	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	6.5	5.5	8.5	3.0	7.0	5.5
Merged-chr1-184622128-4	chr1	184621677	184622677	+	872.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64486.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70214852-2	chr8	70214352	70215352	+	872.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-2571.0	NM_001007570	73095.0	Mm.185413	NM_001007570	ENSMUSG00000002346	Slc25a42	2900084M01Rik	solute carrier family 25, member 42	protein-coding	0.5	14.0	6.0	5.0	6.5	3.5
Merged-chr1-156742156-2	chr1	156741656	156742656	+	872.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23246.0	NM_145413	215015.0	Mm.229107	NM_145413	ENSMUSG00000033557	Fam20b	C530043G21Rik|mKIAA0475	family with sequence similarity 20, member B	protein-coding	0.0	2.5	0.0	0.0	2.0	2.0
Merged-chr10-121603705-3	chr10	121603214	121604214	+	872.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359618, intron 17 of 24)	intron (NM_001359618, intron 17 of 24)	-16920.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	1.5	12.0	1.5	4.5	1.5	1.5
Merged-chr13-9130047-4	chr13	9129554	9130554	+	872.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 3 of 17)	intron (NM_172585, intron 3 of 17)	36173.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102643608-2	chr12	102643108	102644108	+	872.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 2 of 9)	intron (NM_172584, intron 2 of 9)	41412.0	NR_035457	100316812.0		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18028223-2	chr2	18027723	18028723	+	872.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028376, exon 2 of 2)	non-coding (NR_028376, exon 2 of 2)	974.0	NR_028378	100034739.0	Mm.401643	NR_028378		Gm17762	-	predicted gene, 17762	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95840249-4	chr11	95839736	95840736	+	872.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163464, intron 1 of 7)	intron (NM_001163464, intron 1 of 7)	-2059.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140387515-2	chr5	140387015	140388015	+	872.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172277, intron 1 of 10)	(GGA)n|Simple_repeat|Simple_repeat	1793.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-115897266-2	chr13	115896769	115897769	+	872.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	412419.0	NM_021459	16392.0	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	2.0	0.0	0.0	0.0	0.0	1.5
Merged-chr3-81046971-2	chr3	81046471	81047471	+	872.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	10555.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	9.5	36.0	13.0	16.5	18.0	25.0
Merged-chr4-59253047-4	chr4	59252502	59253502	+	871.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7049.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	1.0	8.0	8.5	0.5	3.5	7.5
Merged-chr7-25179810-3	chr7	25179321	25180321	+	871.988892	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	24752.0	NR_045848	434147.0	Mm.59171	NM_001033781	ENSMUSG00000074274	D930028M14Rik	EG434147	RIKEN cDNA D930028M14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25984767-4	chr17	25984274	25985274	+	871.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347334, intron 1 of 11)	intron (NM_001347334, intron 1 of 11)	1022.0	NR_151779	50817.0	Mm.216072	NM_015830	ENSMUSG00000037326	Capn15	Solh	calpain 15	protein-coding	56.0	93.5	44.5	9.0	65.5	48.5
Merged-chr11-86739133-4	chr11	86738634	86739634	+	871.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	18433.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25083321-4	chr8	25082825	25083825	+	871.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 2 of 11)	intron (NM_031257, intron 2 of 11)	18486.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-51832291-3	chr17	51831759	51832759	+	871.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163632, intron 1 of 10)	CpG	388.0	NM_009122	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32960798-4	chr19	32960252	32961252	+	871.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-196360.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-126621492-3	chr3	126621038	126622038	+	871.9166869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	24587.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	52.0	76.5	98.5	5.5	21.0	37.0
Merged-chr3-152783944-4	chr3	152783441	152784441	+	871.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025662, intron 10 of 10)	intron (NM_025662, intron 10 of 10)	69841.0	NM_025662	329777.0	Mm.331447	NM_025662	ENSMUSG00000039047	Pigk	3000001O05Rik|Gm38470|PIG-K	phosphatidylinositol glycan anchor biosynthesis, class K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-34573732-4	chr16	34573266	34574266	+	871.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-59739.0	NM_177357	545156.0	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118796100-4	chr10	118795580	118796580	+	871.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72823.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52007595-2	chr3	52007095	52008095	+	871.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	97411.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-97007066-4	chr5	97006578	97007578	+	871.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 1 of 15)	intron (NM_080708, intron 1 of 15)	9389.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	10.5	16.0	13.0	16.5	49.0	21.0
Merged-chr8-105362095-4	chr8	105361558	105362558	+	871.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081332, intron 12 of 15)	intron (NM_001081332, intron 12 of 15)	-13323.0	NM_001081333	102075.0	Mm.32034	NM_175321	ENSMUSG00000014782	Plekhg4	4931414L13Rik|AI448583|mFLJ00068	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-54338673-3	chr4	54338164	54339164	+	871.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	512619.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	2.0	0.0	2.5	1.5	1.5	7.0
Merged-chr8-40598550-4	chr8	40598072	40599072	+	871.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040699, intron 3 of 13)	intron (NM_001040699, intron 3 of 13)	36220.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	81.5	193.0	137.0	32.5	73.0	65.5
Merged-chr14-75751244-4	chr14	75750744	75751744	+	871.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177381, intron 1 of 22)	intron (NM_177381, intron 1 of 22)	3249.0	NM_177381	338337.0	Mm.86507	NM_177381	ENSMUSG00000034893	Cog3	E430004N23	component of oligomeric golgi complex 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88511570-2	chr3	88511059	88512059	+	871.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8207.0	NM_001002011	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11187776-4	chr8	11187296	11188296	+	871.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-125009.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-151068926-4	chr4	151068398	151069398	+	871.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 23 of 23)	intron (NM_001081557, intron 23 of 23)	-10945.0	NM_009498	22319.0	Mm.273930	NM_009498	ENSMUSG00000028955	Vamp3	D130027G05Rik|VAMP-3|ceb	vesicle-associated membrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-136914547-2	chr2	136914047	136915047	+	871.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355671, intron 2 of 6)	intron (NM_001355671, intron 2 of 6)	15196.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80172773-2	chr11	80172265	80173265	+	871.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 7 of 10)	intron (NM_172133, intron 7 of 10)	-11107.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	2.5	7.5	21.5	9.0	19.0	9.0
Merged-chr8-11253720-3	chr8	11253232	11254232	+	871.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009931, intron 2 of 51)	intron (NM_009931, intron 2 of 51)	-59073.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9189293-3	chr13	9188785	9189785	+	871.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-87240.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97343148-4	chr6	97342659	97343659	+	871.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 8 of 23)	intron (NM_145148, intron 8 of 23)	-90379.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	5.5	11.0	11.0	1.0	23.0	3.0
Merged-chr11-76541146-3	chr11	76540639	76541639	+	871.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198894, intron 1 of 22)	intron (NM_198894, intron 1 of 22)	30245.0	NM_198895	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.5	1.5	2.0	0.0	4.5	4.0
Merged-chr3-83899786-4	chr3	83899289	83900289	+	871.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172681, intron 33 of 34)	intron (NM_172681, intron 33 of 34)	-58181.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90631025-4	chr2	90630530	90631530	+	871.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46185.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-53551631-4	chr7	53551130	53552130	+	871.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	340259.0	NR_105746	102466619.0		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-80408728-4	chr1	80408224	80409224	+	871.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37208.0	NR_040460	72208.0	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan	RIKEN cDNA 1700016L21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57762381-4	chr15	57761874	57762874	+	871.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 1 of 3)	intron (NM_199449, intron 1 of 3)	67707.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83643497-10	chr6	83642932	83643932	+	871.790466	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	12684.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	4.0	17.5	13.5	2.0	27.5	17.0
Merged-chr8-88274290-3	chr8	88273798	88274798	+	871.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007406, intron 1 of 27)	intron (NM_007406, intron 1 of 27)	1895.0	NM_007406	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	2.0	32.5	9.5	1.5	17.5	11.0
Merged-chr13-100824624-3	chr13	100824123	100825123	+	871.7666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022885, intron 4 of 15)	intron (NM_022885, intron 4 of 15)	8804.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49971971-4	chr16	49971476	49972476	+	871.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8484.0	NR_045001	628951.0	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19936200-4	chr7	19935701	19936701	+	871.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR53_Mm|LTR|ERVK	14542.0	NM_027308	70080.0	Mm.98583	NM_027308	ENSMUSG00000040498	Igsf23	2210010C17Rik	immunoglobulin superfamily, member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36936491-2	chr16	36935991	36936991	+	871.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008225, intron 1 of 13)	intron (NM_008225, intron 1 of 13)	1508.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116409223-2	chr11	116408723	116409723	+	871.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_027258, intron 1 of 18)	L1M4|LINE|L1	3809.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100006960-6	chr12	100006520	100007520	+	871.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	42521.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136629574-4	chr1	136629070	136630070	+	871.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177643, exon 2 of 2)	3' UTR (NM_177643, exon 2 of 2)	4669.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20040350-4	chr10	20039858	20040858	+	871.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 7 of 29)	intron (NM_008580, intron 7 of 29)	105832.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38658623-3	chr2	38658068	38659068	+	871.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14662.0	NM_011187	19177.0	Mm.389251	NM_011187	ENSMUSG00000026750	Psmb7	AU020723|MC14	proteasome (prosome, macropain) subunit, beta type 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149049640-3	chr4	149049115	149050115	+	871.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019781, intron 2 of 8)	intron (NM_019781, intron 2 of 8)	50197.0	NM_019781	56273.0	Mm.184172	NM_019781	ENSMUSG00000028975	Pex14	Pex14p|R75137	peroxisomal biogenesis factor 14	protein-coding	0.0	2.0	0.0	1.0	8.0	3.0
Merged-chr11-70236846-4	chr11	70236374	70237374	+	871.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177606, intron 2 of 3)	intron (NM_001177606, intron 2 of 3)	1040.0	NM_001177601	104457.0	Mm.30016	NM_026757	ENSMUSG00000020831	0610010K14Rik	1110020A23Rik|AL033328|AU045833|Bap18	RIKEN cDNA 0610010K14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25467846-4	chr14	25467327	25468327	+	871.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	8642.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	2.5	11.5	4.5	5.5	17.0	5.0
Merged-chr14-55823574-4	chr14	55823054	55824054	+	871.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1241.0	NM_001168346	73181.0	Mm.27908	NM_023699	ENSMUSG00000023411	Nfatc4	3110041H08Rik|AW107667|AW546455|Nfat3	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-5301202-4	chr5	5300711	5301711	+	871.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	-35143.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	5.5	1.5	0.5	6.0	0.0	0.0
Merged-chr10-89703235-4	chr10	89702744	89703744	+	871.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16881.0	NR_130956	69002.0	Mm.293947	NR_130956	ENSMUSG00000097383	1500026H17Rik	-	RIKEN cDNA 1500026H17 gene	ncRNA	0.0	1.0	6.0	7.0	0.0	0.5
Merged-chr10-111118551-4	chr10	111118057	111119057	+	871.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-46245.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4095819-2	chr19	4095319	4096319	+	871.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-1532.0	NM_026373	52004.0	Mm.29609	NM_026373	ENSMUSG00000024856	Cdk2ap2	5830466O21Rik|D19Ertd144e|Doc-1r	CDK2-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117092895-3	chr11	117092409	117093409	+	871.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15561.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99265846-3	chr15	99265341	99266341	+	871.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13880.0	NM_016766	51812.0	Mm.383472	NM_016766	ENSMUSG00000037570	Mcrs1	C78274|ICP22BP|MSP58|P78	microspherule protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-48048990-3	chr4	48048479	48049479	+	871.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_015743, exon 2 of 8)	5' UTR (NM_015743, exon 2 of 8)	-2267.0	NM_001307989	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84803234-3	chr12	84802736	84803736	+	871.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013589, intron 16 of 34)	MTC|LTR|ERVL-MaLR	29966.0	NM_028863	74316.0	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111667807-2	chr12	111667307	111668307	+	871.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4531.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6281620-3	chr19	6281159	6282159	+	871.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	4763.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40140933-3	chr12	40140428	40141428	+	871.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6700.0	NM_001146196	20259.0	Mm.2416	NM_009132	ENSMUSG00000002565	Scin	AW545522|adseverin	scinderin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3719380-3	chr7	3718872	3719872	+	871.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011095, exon 4 of 15)	exon (NM_011095, exon 4 of 15)	1010.0	NM_001357394	18733.0	Mm.326531	NM_011095	ENSMUSG00000058818	Pirb	Gp91|LIR-3|Lilrb3|PIR-B	paired Ig-like receptor B	protein-coding	0.0	3.0	1.0	0.0	5.5	0.5
Merged-chr16-91864287-4	chr16	91863811	91864811	+	871.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 26 of 28)	intron (NM_001110275, intron 26 of 28)	67319.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-113819607-3	chr2	113819105	113820105	+	871.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009162, intron 2 of 5)	intron (NM_009162, intron 2 of 5)	9486.0	NM_009162	20394.0	Mm.4836	NM_009162	ENSMUSG00000023236	Scg5	7B2|AI325031|Sgne-1|Sgne1	secretogranin V	protein-coding	2.5	9.0	5.0	11.0	4.0	11.0
Merged-chr7-45336576-3	chr7	45336086	45337086	+	871.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010473, exon 1 of 6)	exon (NM_010473, exon 1 of 6)	1317.0	NM_010473	15464.0	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21608229-2	chr11	21607727	21608727	+	871.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145425, intron 1 of 17)	MTA_Mm|LTR|ERVL-MaLR	35946.0	NM_145425	216560.0	Mm.138090	NM_145425	ENSMUSG00000020319	Wdpcp	AV249152	WD repeat containing planar cell polarity effector	protein-coding	0.0	14.0	6.0	3.5	10.5	5.0
Merged-chr2-158168584-2	chr2	158168084	158169084	+	871.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22192.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5433668-2	chr19	5433168	5434168	+	871.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8524.0	NM_001256515	107242.0	Mm.329658	NM_134149	ENSMUSG00000047423	AI837181	Bles03|N28173	expressed sequence AI837181	protein-coding	32.0	33.5	33.5	15.0	34.0	26.5
Merged-chr2-51387358-4	chr2	51386862	51387862	+	871.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50538.0	NR_130155	73375.0	Mm.396227	NR_130155	ENSMUSG00000086007	1700057H21Rik	-	RIKEN cDNA 1700057H21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54093270-4	chr11	54092796	54093796	+	871.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7628.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88412571-4	chr4	88412067	88413067	+	871.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025760)	TTS (NM_025760)	26359.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	9.5	33.0	7.0	6.5	24.0	6.5
Merged-chr2-169087442-3	chr2	169086929	169087929	+	871.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109160.0	NR_040326	75508.0	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99531958-7	chr7	99531402	99532402	+	871.609497	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-3584.0	NM_178220	109689.0	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	0.0	1.5	4.0	8.0	0.0	2.0
Merged-chr4-129746146-6	chr4	129745609	129746609	+	871.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3806.0	NR_045036	20218.0	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	80.0	185.5	130.0	90.0	174.5	83.0
Merged-chr15-66768825-4	chr15	66768328	66769328	+	871.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 40 of 47)	intron (NM_009375, intron 40 of 47)	63001.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118762265-4	chr9	118761787	118762787	+	871.587524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	50595.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54983240-4	chr13	54982743	54983743	+	871.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153131, intron 1 of 15)	intron (NM_153131, intron 1 of 15)	33832.0	NM_001311128	107448.0	Mm.23573	NM_153131	ENSMUSG00000025876	Unc5a	Unc5h1|mKIAA1976	unc-5 netrin receptor A	protein-coding	6.0	12.0	0.0	3.0	10.5	0.0
Merged-chr9-78589760-2	chr9	78589301	78590301	+	871.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1756.0	NM_001276452	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr13-59835336-4	chr13	59834849	59835849	+	871.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12202.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	1.0	3.0	7.5	4.5	21.0	5.5
Merged-chr15-98664423-3	chr15	98663926	98664926	+	871.5833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1537.0	NM_001080981	74351.0	Mm.45725	NM_001080981	ENSMUSG00000003360	Ddx23	3110082M05Rik|4921506D17Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100187064-4	chr15	100186546	100187546	+	871.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172819, intron 18 of 32)	intron (NM_172819, intron 18 of 32)	990.0	NR_037311	100499528.0		NR_037311	ENSMUSG00000092752	Mir3473a	Mir3473|mir-3473a|mmu-mir-3473|mmu-mir-3473a	microRNA 3473a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59228982-7	chr2	59228469	59229469	+	871.569031	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	MTC|LTR|ERVL-MaLR	68119.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97488610-3	chr6	97488120	97489120	+	871.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346637)	promoter-TSS (NM_001346637)	-800.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	102.0	337.5	204.5	110.0	261.0	233.0
Merged-chr4-49607321-4	chr4	49606824	49607824	+	871.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-9448.0	NM_025944	67063.0	Mm.454013	NM_025944	ENSMUSG00000039611	Tmem246	2810432L12Rik|9330170P15Rik|AI835809	transmembrane protein 246	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95048248-4	chr4	95047733	95048733	+	871.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010591)	TTS (NM_010591)	3989.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38951077-4	chr6	38950576	38951576	+	871.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 2 of 12)	intron (NM_011539, intron 2 of 12)	32090.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55613112-4	chr1	55612607	55613607	+	871.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	207161.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11451635-4	chr8	11451169	11452169	+	871.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26260.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43453552-3	chr4	43453082	43454082	+	871.507935	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110321, intron 2 of 7)	intron (NM_001110321, intron 2 of 7)	1044.0	NM_001110320	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	4.0	4.0	9.5	4.0	3.5	15.0
Merged-chr8-107368050-2	chr8	107367550	107368550	+	871.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133957, exon 14 of 16)	exon (NM_133957, exon 14 of 16)	35155.0	NM_008706	18104.0	Mm.252	NM_008706	ENSMUSG00000003849	Nqo1	AV001255|Dia4|Dtd|Nmo-1|Nmo1|Nmor1|Ox-1|Ox1|Qr1	NAD(P)H dehydrogenase, quinone 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18680251-3	chr16	18679746	18680746	+	871.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5A|LINE|L1	-50308.0	NM_213614	18951.0	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14074564-2	chr2	14074064	14075064	+	871.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038162)	promoter-TSS (NR_038162)	464.0	NM_011484	20844.0	Mm.273174	NM_011484	ENSMUSG00000026718	Stam	STAM1	signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115280469-2	chr5	115279969	115280969	+	871.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026504, intron 1 of 6)	ID_B1|SINE|B4	767.0	NM_026504	52064.0	Mm.290142	NM_026504	ENSMUSG00000041733	Coq5	1810014G04Rik|D5Ertd33e	coenzyme Q5 methyltransferase	protein-coding	1.5	1.5	2.5	4.0	12.0	1.5
Merged-chr1-138290940-2	chr1	138290440	138291440	+	871.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	17202.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40735597-2	chr19	40735130	40736130	+	871.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 8 of 9)	L1_Mur3|LINE|L1	75860.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	3.5	10.0	8.0	9.0	8.0	5.5
Merged-chr13-90062077-2	chr13	90061577	90062577	+	871.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_028012, exon 3 of 8)	exon (NM_028012, exon 3 of 8)	27531.0	NM_028012	108138.0	Mm.37531	NM_028012	ENSMUSG00000021615	Xrcc4	2310057B22Rik|AW413319|AW545101	X-ray repair complementing defective repair in Chinese hamster cells 4	protein-coding	0.0	4.5	4.5	5.5	14.5	5.0
Merged-chr1-193649574-1	chr1	193649074	193650074	+	871.5	f0_balb.idr	Intergenic	MLT1H-int|LTR|ERVL-MaLR	-142044.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	4.5	0.0	3.5	0.0	0.0	1.0
Merged-chr7-122242480-2	chr7	122241980	122242980	+	871.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22984.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122125299-2	chr7	122124799	122125799	+	871.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289844, intron 4 of 12)	intron (NM_001289844, intron 4 of 12)	7647.0	NM_001289844	233826.0	Mm.38348	NM_172744	ENSMUSG00000044702	Palb2	BC066140	partner and localizer of BRCA2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119461999-3	chr13	119461488	119462488	+	871.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113550)	promoter-TSS (NM_001113550)	-771.0	NR_153825	67392.0	Mm.390641	NM_026127	ENSMUSG00000062822	4833420G17Rik	2210017J06Rik|5730533D17Rik|AW107518|C85193	RIKEN cDNA 4833420G17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75502077-2	chr18	75501577	75502577	+	871.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 9 of 11)	intron (NM_201354, intron 9 of 11)	-12568.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	64.5	73.5	68.5	48.0	67.5	50.0
Merged-chr13-103777357-2	chr13	103776857	103777857	+	871.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2749.0	NM_001361085	218543.0	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91192136-2	chr2	91191636	91192636	+	871.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355279, intron 3 of 9)	intron (NM_001355279, intron 3 of 9)	2899.0	NM_013839	22259.0	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35835902-2	chr17	35835402	35836402	+	871.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011655, exon 4 of 4)	exon (NM_011655, exon 4 of 4)	2399.0	NM_011655	22154.0	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154187717-3	chr2	154187250	154188250	+	871.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3068.0	NM_001012392	228801.0	Mm.3783	NM_153418	ENSMUSG00000027485	Bpifb1	Lplunc1	BPI fold containing family B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70530191-2	chr8	70529686	70530686	+	871.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111066, intron 2 of 8)	intron (NM_001111066, intron 2 of 8)	2340.0	NM_001199631	14232.0	Mm.141864	NM_010223	ENSMUSG00000019428	Fkbp8	38kDa|FKBP-38|FKBP-8|FKBPR38|Fkbp38|mFKBP38	FK506 binding protein 8	protein-coding	14.5	1.0	0.5	0.0	2.0	0.0
Merged-chr15-57975277-2	chr15	57974777	57975777	+	871.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-10626.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11705187-2	chr16	11704687	11705687	+	871.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 18 of 20)	L2b|LINE|L2	-74515.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-33931329-2	chr13	33930829	33931829	+	871.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009254, intron 2 of 6)	intron (NM_009254, intron 2 of 6)	-4703.0	NR_040707	68808.0	Mm.443347	NR_040707	ENSMUSG00000085457	1110046J04Rik	-	RIKEN cDNA 1110046J04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43795090-2	chr13	43794541	43795541	+	871.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009856, intron 2 of 4)	RMER12C|LTR|ERVK	9929.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67223925-2	chr7	67223425	67224425	+	871.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001191051, intron 2 of 2)	intron (NM_001191051, intron 2 of 2)	1309.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108382526-4	chr3	108382001	108383001	+	871.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040560, exon 2 of 3)	non-coding (NR_040560, exon 2 of 3)	1240.0	NR_040560	100038453.0	Mm.214328	NR_040560	ENSMUSG00000074281	Gm12522	-	predicted gene 12522	ncRNA	12.5	2.0	3.0	12.5	2.0	3.5
Merged-chr12-85638607-2	chr12	85638107	85639107	+	871.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 3 of 3)	intron (NM_001205053, intron 3 of 3)	38589.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146630622-1	chr3	146630122	146631122	+	871.5	f0_balb.idr	3' UTR (NM_009474, exon 8 of 8)	3' UTR (NM_009474, exon 8 of 8)	-11310.0	NR_045949	100286843.0	Mm.475299	NR_045949	ENSMUSG00000085810	Gm16325	-	predicted gene 16325	ncRNA	0.0	0.5	0.0	7.5	0.5	0.0
Merged-chr12-100024065-3	chr12	100023549	100024549	+	871.488892	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	59550.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-114983340-4	chr4	114982788	114983788	+	871.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025647, intron 1 of 5)	intron (NM_025647, intron 1 of 5)	3940.0	NM_025647	66588.0	Mm.294159	NM_025647	ENSMUSG00000028719	Cmpk1	0610011D08Rik|CK|Cmpk|UMP-CMPk	cytidine monophosphate (UMP-CMP) kinase 1	protein-coding	13.0	23.5	22.0	0.0	12.5	0.0
Merged-chr13-52252855-4	chr13	52252366	52253366	+	871.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	156125.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73882369-4	chr17	73881855	73882855	+	871.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67841.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160356386-4	chr2	160355897	160356897	+	871.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	10668.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	16.5	19.0	6.0	6.5	15.0	7.0
Merged-chr8-95132139-4	chr8	95131650	95132650	+	871.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145831, intron 3 of 21)	intron (NM_001145831, intron 3 of 21)	10390.0	NM_010631	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	1.5	4.5	3.5	7.0	11.0	5.0
Merged-chr8-61909940-3	chr8	61909457	61910457	+	871.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7263.0	NM_001293772	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	21.0	44.5	35.5	14.0	41.0	32.5
Merged-chr1-54565604-3	chr1	54565099	54566099	+	871.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7915.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	10.0	16.5	12.0	22.5	44.5	37.0
Merged-chr16-18248096-3	chr16	18247590	18248590	+	871.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080999)	promoter-TSS (NM_001080999)	604.0	NM_011239	19385.0	Mm.235287	NM_011239	ENSMUSG00000005732	Ranbp1	Htf9a	RAN binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-65097701-3	chr14	65097211	65098211	+	871.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018788, intron 1 of 6)	CpG	395.0	NM_018788	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31295766-4	chr5	31295271	31296271	+	871.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_022424, exon 1 of 7)	5' UTR (NM_022424, exon 1 of 7)	161.0	NM_001356945	64339.0	Mm.292544	NM_022424	ENSMUSG00000038552	Fndc4	2810430J06Rik|6330410H20Rik|AB030187|AI838506|AW487863|FRCP1|Fnmp1	fibronectin type III domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5824384-4	chr13	5823883	5824883	+	871.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33709.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-130708694-4	chr3	130708165	130709165	+	871.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025509, intron 1 of 3)	intron (NM_025509, intron 1 of 3)	779.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37555772-4	chr1	37555292	37556292	+	871.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14776.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4556911-4	chr7	4556412	4557412	+	871.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207270, intron 12 of 19)	intron (NM_207270, intron 12 of 19)	-9371.0	NM_001360422	53420.0	Mm.358663	NM_016908	ENSMUSG00000004961	Syt5	SytV	synaptotagmin V	protein-coding	3.5	0.0	2.0	0.0	3.5	0.0
Merged-chr17-71836067-2	chr17	71835619	71836619	+	871.416626	f0_balb.idr|f1_balb.idr	intron (NM_001271483, intron 13 of 16)	intron (NM_001271483, intron 13 of 16)	54172.0	NM_030179	78785.0	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	7.5	1.5	6.0	61.0	141.5	97.5
Merged-chr12-78227500-6	chr12	78227046	78228046	+	871.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172952, intron 1 of 23)	intron (NM_172952, intron 1 of 23)	891.0	NM_145965	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0.0	4.5	5.0	8.5	6.5	8.0
Merged-chr16-44136524-8	chr16	44135994	44136994	+	871.3875119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	2765.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81351210-3	chr13	81350709	81351709	+	871.3777470000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 83 of 89)	Lx9|LINE|L1	281935.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-135980991-4	chr6	135980493	135981493	+	871.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008171, intron 4 of 14)	intron (NM_008171, intron 4 of 14)	192518.0	NM_008171	14812.0	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	0.5	22.0	1.5	0.0	1.5	3.5
Merged-chr8-94089890-4	chr8	94089416	94090416	+	871.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026116, intron 2 of 16)	intron (NM_026116, intron 2 of 16)	8895.0	NM_026116	67378.0	Mm.292107	NM_026116	ENSMUSG00000031755	Bbs2	2410125H22Rik|AI447581	Bardet-Biedl syndrome 2 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116434729-4	chr11	116434217	116435217	+	871.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176902, intron 2 of 2)	CpG-2855	504.0	NR_003376	664849.0	Mm.258466	NR_003376		Gm7367	EG664849	1110014K08Rik pseudogene	pseudo	9.5	56.0	34.5	10.0	25.5	50.0
Merged-chr8-33656165-4	chr8	33655718	33656718	+	871.333374	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010344, intron 1 of 12)	B3|SINE|B2	2980.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	33.0	81.0	30.0	10.5	8.5	12.5
Merged-chr2-91876972-2	chr2	91876472	91877472	+	871.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080754, intron 13 of 18)	intron (NM_001080754, intron 13 of 18)	-45217.0	NM_007699	12672.0	Mm.330405	NM_007699	ENSMUSG00000040495	Chrm4	Chrm-4|M4	cholinergic receptor, muscarinic 4	protein-coding	3.5	8.5	7.0	0.0	3.0	6.5
Merged-chr7-19311043-2	chr7	19310543	19311543	+	871.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008036)	promoter-TSS (NM_008036)	-998.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80792325-4	chr12	80791829	80792829	+	871.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	1797.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97416056-3	chr11	97415555	97416555	+	871.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-34105.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16048919-3	chr7	16048439	16049439	+	871.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22906.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-51693021-2	chr12	51692521	51693521	+	871.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001329698, intron 1 of 5)	B1_Mm|SINE|Alu	-1107.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24346500-3	chr2	24345923	24346923	+	871.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039701, intron 1 of 3)	intron (NM_001039701, intron 1 of 3)	1052.0	NM_001039701	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52011504-3	chr3	52010994	52011994	+	871.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	93512.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136253067-3	chr5	136252560	136253560	+	871.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291238, intron 18 of 22)	intron (NM_001291238, intron 18 of 22)	-8120.0	NM_018825	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6402929-3	chr11	6402428	6403428	+	871.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005867, intron 15 of 18)	intron (NM_001005867, intron 15 of 18)	1298.0	NR_106109	102465759.0		NR_106109	ENSMUSG00000098516	Mir7651	Gm27664|mmu-mir-7651	microRNA 7651	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63133388-3	chr9	63132870	63133870	+	871.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	U6|snRNA|snRNA	13610.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87935287-2	chr1	87934787	87935787	+	871.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_177646, intron 21 of 29)	intron (NM_177646, intron 21 of 29)	73264.0	NM_001198573	227334.0	Mm.80484	NM_001033291	ENSMUSG00000005501	Usp40	B230215L03Rik|C730029K03	ubiquitin specific peptidase 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-74793718-3	chr5	74793285	74794285	+	871.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90882.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	0.0	1.0	0.0	10.0	5.5	4.0
Merged-chr5-43883131-4	chr5	43882620	43883620	+	871.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	14311.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	7.0	9.0	13.5	8.5	15.5	8.0
Merged-chr8-125416391-3	chr8	125415874	125416874	+	871.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76459.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	5.5	3.0	9.0	3.5	1.0	11.5
Merged-chr19-6827068-4	chr19	6826572	6827572	+	871.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	2872.0	NR_039555	100628576.0		NR_039555	ENSMUSG00000104884	Mir5046	mmu-mir-5046|mu-mir-5046	microRNA 5046	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-46839611-3	chr7	46839090	46840090	+	871.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6214.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-106760290-3	chr14	106759781	106760781	+	871.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-273761.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	0.0	0.0	10.0	0.0	0.5	5.0
Merged-chr15-76658237-2	chr15	76657737	76658737	+	871.2999880000001	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001276322, exon 3 of 3)	3' UTR (NM_001276322, exon 3 of 3)	-1336.0	NM_001276321	54151.0	Mm.247752	NM_019396	ENSMUSG00000053929	Cyhr1	1110031M01Rik|AU042374|Chrp	cysteine and histidine rich 1	protein-coding	0.0	0.5	1.5	0.0	0.5	1.5
Merged-chr14-45659083-4	chr14	45658573	45659573	+	871.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039106)	promoter-TSS (NM_001039106)	-930.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	123.0	246.5	165.0	85.5	179.0	151.0
Merged-chr14-102660527-4	chr14	102660026	102661026	+	871.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	322106.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-100974069-3	chr3	100973556	100974556	+	871.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4393.0	NM_001013026	74044.0	Mm.270961	NM_001013026	ENSMUSG00000033222	Ttf2	4632434F22Rik|8030447N19|AV218430	transcription termination factor, RNA polymerase II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-99177254-3	chr11	99176724	99177724	+	871.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22147.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0.0	2.5	0.5	0.0	2.5	0.5
Merged-chr10-121641554-4	chr10	121640852	121641852	+	871.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177335)	promoter-TSS (NM_177335)	-349.0	NM_177335	216393.0	Mm.119759	NM_177335	ENSMUSG00000047642	D930020B18Rik	1500017I17Rik	RIKEN cDNA D930020B18 gene	protein-coding	0.0	0.0	0.5	0.0	4.5	0.0
Merged-chr11-117725117-4	chr11	117724614	117725614	+	871.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 5 of 21)	intron (NM_198022, intron 5 of 21)	54534.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120288639-2	chr8	120288139	120289139	+	871.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60409.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-140965348-2	chr4	140964848	140965848	+	871.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355515, intron 1 of 7)	B1_Mur3|SINE|Alu	4077.0	NM_023374	67680.0	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26239832-4	chr8	26239349	26240349	+	871.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81680.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61383786-2	chr18	61383286	61384286	+	871.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_133249, intron 1 of 11)	intron (NM_133249, intron 1 of 11)	14114.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	6.0	20.0	15.0	2.0	42.0	19.0
Merged-chr10-128743897-4	chr10	128743418	128744418	+	871.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_016811, exon 1 of 24)	5' UTR (NM_016811, exon 1 of 24)	158.0	NM_016811	13139.0	Mm.291235	NM_016811	ENSMUSG00000025357	Dgka	80kDa|AW146112|Dagk1	diacylglycerol kinase, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87550844-4	chr17	87550331	87551331	+	871.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85148.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0.0	6.0	1.0	0.0	4.5	0.5
Merged-chr19-11497433-4	chr19	11496936	11497936	+	871.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164202, intron 1 of 4)	intron (NM_001164202, intron 1 of 4)	5398.0	NM_001164202	666926.0	Mm.486382	NM_001164202	ENSMUSG00000058470	Gm8369	EG666926	predicted gene 8369	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32506308-4	chr17	32505729	32506729	+	871.244019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001101445)	promoter-TSS (NM_001101445)	-233.0	NM_001101445	208285.0	Mm.311422	NM_001101445	ENSMUSG00000091586	Cyp4f17	EG208285	cytochrome P450, family 4, subfamily f, polypeptide 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102876345-4	chr2	102875853	102876853	+	871.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	MIRc|SINE|MIR	25312.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	1.5	9.0	4.5	11.0	16.0	3.5
Merged-chr14-121589617-3	chr14	121589136	121590136	+	871.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081039, intron 38 of 53)	intron (NM_001081039, intron 38 of 53)	-84382.0	NM_053079	56643.0	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	0.0	0.0	0.5	0.0	5.0	1.0
Merged-chr11-114988110-6	chr11	114987547	114988547	+	871.2222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145437, intron 1 of 3)	intron (NM_145437, intron 1 of 3)	1839.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	49.0	103.5	96.0	33.5	104.5	60.0
Merged-chr3-68952219-3	chr3	68951664	68952664	+	871.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026641, intron 8 of 19)	RLTR45|LTR|ERVK	52406.0	NM_026641	68259.0	Mm.389451	NM_026641	ENSMUSG00000027778	Ift80	4921524P20Rik|Wdr56|mKIAA1374	intraflagellar transport 80	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10795190-4	chr19	10794698	10795698	+	871.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009852, intron 6 of 12)	intron (NM_009852, intron 6 of 12)	34860.0	NM_001037801	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128495576-4	chr10	128495084	128496084	+	871.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172259, intron 4 of 6)	intron (NM_172259, intron 4 of 6)	-1698.0	NM_010860	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166537087-3	chr2	166536579	166537579	+	871.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27443.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80407919-2	chr12	80407419	80408419	+	871.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_177267, intron 1 of 8)	B3A|SINE|B2	-16182.0	NR_028544	100217447.0	Mm.453532	NR_028544	ENSMUSG00000112285	Scarna3b	MBI-100	small Cajal body-specific RNA 3B	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58867260-4	chr11	58866755	58867755	+	871.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172403)	promoter-TSS (NM_172403)	15.0	NM_172403	69944.0	Mm.32118	NM_172403	ENSMUSG00000020491	2810021J22Rik	AI449137	RIKEN cDNA 2810021J22 gene	protein-coding	4.0	0.0	1.0	0.0	0.0	0.0
Merged-chr17-3092955-4	chr17	3092469	3093469	+	871.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8786.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr19-6985298-2	chr19	6984798	6985798	+	871.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_011697, intron 6 of 6)	intron (NM_011697, intron 6 of 6)	2353.0	NM_001185164	22340.0	Mm.15607	NM_011697	ENSMUSG00000024962	Vegfb	VEGF-B|Vrf	vascular endothelial growth factor B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27183831-2	chr14	27183331	27184331	+	871.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	intron (NM_001289686, intron 2 of 12)	39838.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75781207-6	chr10	75780684	75781684	+	871.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_133994, exon 1 of 5)	5' UTR (NM_133994, exon 1 of 5)	230.0	NM_133994	103140.0	Mm.5731	NM_133994	ENSMUSG00000001665	Gstt3	AI118089	glutathione S-transferase, theta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-84151388-4	chr7	84150833	84151833	+	871.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133722, exon 1 of 3)	exon (NM_133722, exon 1 of 3)	560.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101252356-2	chr15	101251856	101252856	+	871.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-14490.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	29.0	63.5	50.0	25.5	101.0	49.0
Merged-chr11-115697979-2	chr11	115697479	115698479	+	871.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	RMER15|LTR|ERVL	1555.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-63966548-4	chr5	63966067	63967067	+	871.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145923, intron 1 of 6)	intron (NM_145923, intron 1 of 6)	2330.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	9.5	1.0	1.5	1.5	0.0	0.5
Merged-chr7-80841213-2	chr7	80840713	80841713	+	871.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20895.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46521480-4	chr19	46520966	46521966	+	871.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19818.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3661038-4	chr8	3660552	3661552	+	871.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-4710.0	NM_026985	69189.0	Mm.175176	NM_026985	ENSMUSG00000013974	Mcemp1	1810033B17Rik	mast cell expressed membrane protein 1	protein-coding	0.0	0.0	4.0	0.0	0.0	4.0
Merged-chr10-78054823-4	chr10	78054340	78055340	+	871.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284199)	promoter-TSS (NM_001284199)	-495.0	NM_001284198	54427.0	Mm.13433	NM_019448	ENSMUSG00000000730	Dnmt3l	D6Ertd14e|ecat7	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75828059-4	chr7	75827493	75828493	+	871.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20345.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54972575-4	chr11	54972069	54973069	+	871.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9629.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3771275-4	chr12	3770764	3771764	+	871.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027869, intron 16 of 20)	intron (NR_027869, intron 16 of 20)	-35716.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-125213246-3	chr10	125212743	125213743	+	871.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95573.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-82366969-3	chr12	82366495	82367495	+	871.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 7 of 23)	intron (NM_001167983, intron 7 of 23)	55646.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53399296-3	chr19	53398801	53399801	+	871.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8667.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25056678-4	chr8	25056213	25057213	+	871.104126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 9 of 11)	intron (NM_031257, intron 9 of 11)	-17751.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	21.0	14.0	7.0	11.5	17.0	13.5
Merged-chr10-85185965-4	chr10	85185451	85186451	+	871.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007771)	promoter-TSS (NM_007771)	-897.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-44983007-4	chr2	44982508	44983508	+	871.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001355289)	TTS (NM_001355289)	40169.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32789737-4	chr19	32789239	32790239	+	871.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 2 of 8)	intron (NM_008960, intron 2 of 8)	32162.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	50.0	64.5	50.5	31.5	61.5	41.0
Merged-chr1-82832672-3	chr1	82832193	82833193	+	871.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6767.0	NM_010472	15463.0	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47352479-3	chr14	47351982	47352982	+	871.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21378.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	26.0	47.5	44.5	57.5	66.5	42.0
Merged-chr1-191421166-4	chr1	191420664	191421664	+	871.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24123.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112279578-4	chr5	112279083	112280083	+	871.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	2892.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144721224-2	chr3	144720724	144721724	+	871.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282042)	promoter-TSS (NM_001282042)	-889.0	NM_001282037	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20733079-2	chr16	20732579	20733579	+	871.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009893)	promoter-TSS (NM_009893)	-48.0	NM_001354996	12667.0	Mm.20457	NM_009893	ENSMUSG00000006958	Chrd	Chd	chordin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-100286713-4	chr6	100286202	100287202	+	871.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019743, intron 1 of 4)	CpG	656.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94934255-2	chr8	94933755	94934755	+	871.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033468, intron 4 of 11)	intron (NM_001033468, intron 4 of 11)	10561.0	NM_001145972	382045.0	Mm.334726	NM_001033468	ENSMUSG00000061577	Adgrg5	Gm1109|Gpr114|PGR27	adhesion G protein-coupled receptor G5	protein-coding	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103097816-3	chr3	103097320	103098320	+	871.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033303, intron 13 of 15)	intron (NM_001033303, intron 13 of 15)	23806.0	NM_001033303	229665.0	Mm.331272	NM_001033303	ENSMUSG00000070385	Ampd1	AI553520|Ampd-1	adenosine monophosphate deaminase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-84447990-2	chr14	84447490	84448490	+	871.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001013753, exon 1 of 4)	exon (NM_001013753, exon 1 of 4)	4427.0	NM_001013753	219228.0	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65983021-3	chr9	65982506	65983506	+	871.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173185, intron 5 of 13)	intron (NM_173185, intron 5 of 13)	73996.0	NM_173185	214897.0	Mm.325816	NM_173185	ENSMUSG00000032384	Csnk1g1	9130020E21Rik	casein kinase 1, gamma 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-127979571-2	chr8	127979071	127980071	+	871.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	298654.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0.0	7.0	0.5	0.0	3.0	3.5
Merged-chr4-114925382-4	chr4	114924830	114925830	+	871.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_015758, exon 1 of 1)	exon (NM_015758, exon 1 of 1)	683.0	NM_015758	30923.0	Mm.377122	NM_015758	ENSMUSG00000044518	Foxe3	FREAC8|dyl|rct	forkhead box E3	protein-coding	0.0	1.5	0.0	0.0	0.0	7.0
Merged-chr17-35829923-4	chr17	35829414	35830414	+	871.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008027, exon 9 of 13)	exon (NM_008027, exon 9 of 13)	6557.0	NM_008027	14251.0	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	0.0	0.0	4.5	0.0	0.0	1.5
Merged-chr2-153632371-2	chr2	153631864	153632864	+	871.0	f0_balb.idr|f1_balb.idr	intron (NM_001195390, intron 1 of 9)	intron (NM_001195390, intron 1 of 9)	417.0	NM_001195390	99311.0	Mm.294478	NM_133850	ENSMUSG00000056941	Commd7	2310010I22Rik|AW060956|mU3	COMM domain containing 7	protein-coding	63.5	146.5	126.5	81.0	175.0	119.5
Merged-chr13-108993997-2	chr13	108993497	108994497	+	871.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 2 of 16)	intron (NM_011056, intron 2 of 16)	-330747.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	3.0	4.0	1.0	8.5	4.0	0.5
Merged-chr4-5644562-1	chr4	5644062	5645062	+	871.0	f0_balb.idr	intron (NM_173426, intron 1 of 2)	CpG	472.0	NM_173426	242297.0	Mm.331470	NM_173426	ENSMUSG00000049119	Fam110b	1700012H17Rik|5031405P22|AW049855	family with sequence similarity 110, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84354222-4	chr17	84353714	84354714	+	871.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 26 of 37)	L1M4c|LINE|L1	111994.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-37996858-2	chr12	37996347	37997347	+	871.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178681, intron 2 of 24)	intron (NM_178681, intron 2 of 24)	116330.0	NM_178681	217480.0	Mm.126525	NM_178681	ENSMUSG00000036095	Dgkb	6430574F24|90kda|C630029D13Rik|DAGK2|DGK|DGK-beta|mKIAA0718	diacylglycerol kinase, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31855167-3	chr17	31854659	31855659	+	871.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_010831, intron 1 of 13)	CpG-6228	645.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	0.5	3.0	6.0	1.0	5.0	8.0
Merged-chr5-123041075-2	chr5	123040575	123041575	+	871.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029112, intron 2 of 4)	intron (NM_029112, intron 2 of 4)	5941.0	NM_029112	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21973337-3	chr14	21972839	21973839	+	871.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER63A|DNA|hAT-Blackjack	16262.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114855864-2	chr5	114855364	114856364	+	871.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026263, intron 1 of 11)	intron (NM_026263, intron 1 of 11)	2150.0	NM_026263	67593.0	Mm.251409	NM_026263	ENSMUSG00000029564	4930519G04Rik	1700014B12Rik	RIKEN cDNA 4930519G04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-16020821-2	chr13	16020321	16021321	+	871.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008380, intron 4 of 4)	intron (NM_008380, intron 4 of 4)	2602.0	NR_155430	100503142.0	Mm.359204	NR_155430		B230303A05Rik	B230303A05|EG328191	U1 small nuclear ribonucleoprotein 1C pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32305178-2	chr19	32304678	32305678	+	871.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 2 of 9)	intron (NM_144792, intron 2 of 9)	44138.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153091628-1	chr2	153091128	153092128	+	871.0	f1_balb.idr	Intergenic	Intergenic	-16840.0	NM_001172117	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	47.0	54.0	48.5	14.0	50.5	48.0
Merged-chr3-86884174-1	chr3	86883674	86884674	+	871.0	f0_balb.idr	intron (NM_001195500, intron 2 of 11)	intron (NM_001195500, intron 2 of 11)	36710.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	7.5	5.0	3.0	4.0	6.5	5.0
Merged-chr4-95105548-2	chr4	95105048	95106048	+	871.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53326.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.0	2.0	3.0	0.0	2.5	2.0
Merged-chr4-131922233-3	chr4	131921789	131922789	+	871.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001201367, exon 1 of 1)	exon (NM_001201367, exon 1 of 1)	518.0	NM_001201367	623230.0	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92331722-3	chr1	92331226	92332226	+	871.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	132816.0	NR_105865	102465542.0		NR_105865	ENSMUSG00000098288	Mir6900	Gm27708|mmu-mir-6900	microRNA 6900	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72399703-2	chr6	72399203	72400203	+	871.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-9036.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8341326-1	chr12	8340826	8341826	+	871.0	f1_c57bl6.idr	intron (NM_021429, intron 6 of 6)	intron (NM_021429, intron 6 of 6)	27893.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	16.5	3.5	6.5	1.0	0.0	1.0
Merged-chr8-60804947-1	chr8	60804447	60805447	+	871.0	f0_balb.idr	Intergenic	Intergenic	-85446.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-28882504-3	chr6	28882020	28883020	+	871.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 18 of 23)	intron (NM_019776, intron 18 of 23)	-50773.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-37641204-2	chr18	37640704	37641704	+	871.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175770, exon 2 of 2)	3' UTR (NM_175770, exon 2 of 2)	-2481.0	NM_001159275	83885.0	Mm.193029	NM_001159275	ENSMUSG00000050304	Slc25a2	Ornt2	solute carrier family 25 (mitochondrial carrier, ornithine transporter) member 2	protein-coding	0.0	0.0	0.0	0.0	5.5	0.0
Merged-chr2-167635752-2	chr2	167635252	167636252	+	871.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-3747.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128298133-1	chr2	128297633	128298633	+	871.0	f1_c57bl6.idr	TTS (NR_028589)	TTS (NR_028589)	131218.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0.0	4.0	1.5	0.5	0.0	1.5
Merged-chr3-152340657-1	chr3	152340157	152341157	+	871.0	f1_c57bl6.idr	promoter-TSS (NM_174868)	promoter-TSS (NM_174868)	-250.0	NM_001162375	215708.0	Mm.135018	NM_174868	ENSMUSG00000054942	Miga1	A930038D06|AI852168|C030011O14Rik|Fam73a|Mita1	mitoguardin 1	protein-coding	14.0	16.5	19.5	6.5	12.5	11.0
Merged-chr19-47467221-2	chr19	47466721	47467721	+	871.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2810.0	NM_008018	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	4.0	2.0	1.5	0.0	1.0	0.0
Merged-chr1-184030006-2	chr1	184029506	184030506	+	871.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3992.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73553731-2	chr15	73553231	73554231	+	871.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152151, intron 13 of 23)	intron (NR_152151, intron 13 of 23)	41171.0	NM_001081066	105841.0	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80174964-3	chr10	80174498	80175498	+	871.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027207, exon 3 of 3)	3' UTR (NM_027207, exon 3 of 3)	2054.0	NM_027207	69770.0	Mm.302754	NM_027207	ENSMUSG00000035595	1600002K03Rik	-	RIKEN cDNA 1600002K03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-28869371-3	chr6	28868872	28869872	+	871.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 16 of 23)	intron (NM_019776, intron 16 of 23)	-37625.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-115019455-6	chr7	115018905	115019905	+	871.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a-int|LTR|ERVL-MaLR	68131.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	27.5	52.0	36.0	31.5	38.0	31.5
Merged-chr11-77443867-3	chr11	77443369	77444369	+	871.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 13 of 14)	intron (NM_177710, intron 13 of 14)	-20044.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-7420066-6	chr16	7419547	7420547	+	870.9722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	350212.0	NM_183188	268859.0	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	7.0	20.0	2.0	2.0	0.0	2.5
Merged-chr9-48410627-3	chr9	48410179	48411179	+	870.966675	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43665.0	NR_026561	667933.0	Mm.491076	NR_026561		Gm8884	EG667933	predicted gene 8884	ncRNA	92.0	148.5	112.0	1.0	12.0	6.0
Merged-chr13-101797164-4	chr13	101796655	101797655	+	870.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28938.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116058630-4	chr9	116058124	116059124	+	870.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028638, intron 14 of 14)	intron (NM_028638, intron 14 of 14)	116739.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	17.0	18.0	4.0	13.5	9.0	6.0
Merged-chr13-65176352-4	chr13	65175842	65176842	+	870.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175290)	TTS (NM_175290)	24116.0	NM_146819	258816.0	Mm.377705	NM_146819	ENSMUSG00000049806	Olfr466	MOR209-1	olfactory receptor 466	protein-coding	1.5	1.0	2.0	0.0	0.0	1.5
Merged-chr6-136813311-3	chr6	136812821	136813821	+	870.955566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_021714)	TTS (NM_021714)	5073.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	12.0	28.0	11.0	15.5	27.0	30.0
Merged-chr16-65351225-3	chr16	65350721	65351721	+	870.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-169408.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	0.0	7.0	4.5	0.0	3.5	0.0
Merged-chr1-9967624-7	chr1	9967170	9968170	+	870.9285890000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285425)	promoter-TSS (NM_001285425)	-185.0	NM_001285425	100039596.0	Mm.412928	NM_001285425	ENSMUSG00000099032	Tcf24	Gm10567|Gm2330	transcription factor 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69655502-4	chr11	69654958	69655958	+	870.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009235, exon 1 of 2)	exon (NM_009235, exon 1 of 2)	421.0	NM_009235	20670.0	Mm.347499	NM_009235	ENSMUSG00000041287	Sox15	-	SRY (sex determining region Y)-box 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-129936718-3	chr3	129936218	129937218	+	870.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025779, intron 1 of 7)	intron (NM_025779, intron 1 of 7)	33488.0	NM_025779	66815.0	Mm.31056	NM_025779	ENSMUSG00000027994	Mcub	9030408N13Rik|Ccdc109b	mitochondrial calcium uniporter dominant negative beta subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34526952-4	chr5	34526467	34527467	+	870.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	1183.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131366070-4	chr1	131365565	131366565	+	870.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 4 of 22)	ORR1E|LTR|ERVL-MaLR	-86502.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	2.5	6.0	0.0	0.0	0.0	5.0
Merged-chr10-127937068-6	chr10	127936562	127937562	+	870.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	38527.0	NM_027301	70061.0	Mm.158320	NM_027301	ENSMUSG00000040127	Sdr9c7	1810054F20Rik|Rdh20|Rdhs|SDR-O|Sdro	4short chain dehydrogenase/reductase family 9C, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-21266711-3	chr12	21266238	21267238	+	870.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004364, intron 26 of 26)	intron (NM_001004364, intron 26 of 26)	19546.0	NM_008403	16413.0	Mm.273333	NM_008403	ENSMUSG00000062352	Itgb1bp1	AI449260|AU019480|Icap1	integrin beta 1 binding protein 1	protein-coding	11.0	2.5	1.0	4.5	9.0	1.5
Merged-chr1-180331392-4	chr1	180330862	180331862	+	870.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003623)	promoter-TSS (NR_003623)	-813.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23764318-2	chr13	23763828	23764828	+	870.875	f1_balb.idr|f1_c57bl6.idr	TTS (NM_030609)	TTS (NM_030609)	660.0	NM_030609	80838.0	Mm.480242	NM_030609	ENSMUSG00000049539	Hist1h1a	H1.1|H1a|H1f1|H1var3	histone cluster 1, H1a	protein-coding	7.5	19.5	10.5	4.0	14.0	3.0
Merged-chr3-94367031-4	chr3	94366540	94367540	+	870.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4596.0	NM_001136117	271944.0	Mm.271006	NM_001136117	ENSMUSG00000091648	C2cd4d	Gm659	C2 calcium-dependent domain containing 4D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81843138-4	chr7	81842560	81843560	+	870.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-13629.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	54.5	35.0	55.5	15.5	35.0	23.0
Merged-chr5-8256604-3	chr5	8256105	8257105	+	870.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 3 of 28)	RLTR26_Mus|LTR|ERVK	111555.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80899447-3	chr15	80898950	80899950	+	870.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177124, intron 11 of 21)	intron (NM_177124, intron 11 of 21)	-40589.0	NR_039573	100628612.0		NR_039573	ENSMUSG00000092868	Mir5113	mir-5113|mmu-mir-5113|mu-mir-5113	microRNA 5113	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-144938257-4	chr7	144937768	144938768	+	870.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007631, intron 1 of 4)	intron (NM_007631, intron 1 of 4)	1657.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	24.5	87.0	44.5	52.5	122.0	63.0
Merged-chr7-109518179-2	chr7	109517679	109518679	+	870.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-1016.0	NM_011975	26451.0	Mm.305750	NM_011975	ENSMUSG00000046364	Rpl27a	L27'|L27A|L29	ribosomal protein L27A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-24721032-3	chr4	24720543	24721543	+	870.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163020, intron 4 of 10)	intron (NM_001163020, intron 4 of 10)	130081.0	NM_001163020	212390.0	Mm.409581	NM_001033531	ENSMUSG00000040387	Klhl32	6430524H05Rik|D4Ertd389e|Gm1356|mKIAA1900	kelch-like 32	protein-coding	2.5	4.0	0.0	3.5	5.0	2.5
Merged-chr7-88319505-5	chr7	88318937	88319937	+	870.820007	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41352.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	8.0	37.5	33.0	13.0	16.5	36.0
Merged-chr17-45608626-4	chr17	45608129	45609129	+	870.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-6527.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98387802-4	chr15	98387309	98388309	+	870.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-8701.0	NM_147036	259038.0	Mm.377802	NM_147036	ENSMUSG00000056184	Olfr283	MOR160-1	olfactory receptor 283	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8879499-2	chr10	8878975	8879975	+	870.7999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	6595.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	48.0	78.5	69.0	46.5	72.5	51.5
Merged-chr6-39539923-3	chr6	39539351	39540351	+	870.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172477, intron 1 of 18)	intron (NM_172477, intron 1 of 18)	17983.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7727293-3	chr10	7726807	7727807	+	870.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011835, intron 1 of 10)	PB1D10|SINE|Alu	1307.0	NM_011835	23924.0	Mm.28127	NM_011835	ENSMUSG00000019794	Katna1	-	katanin p60 (ATPase-containing) subunit A1	protein-coding	5.5	20.0	16.5	4.0	11.0	7.0
Merged-chr6-22453304-4	chr6	22452800	22453800	+	870.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97219.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85035585-2	chr8	85035085	85036085	+	870.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1330.0	NM_145390	212999.0	Mm.220357	NM_145390	ENSMUSG00000031691	Tnpo2	1110034O24Rik|AA414969|AI464345|AI852433|IPO3|Knpb2b|Kpnb2b|TRN2	transportin 2 (importin 3, karyopherin beta 2b)	protein-coding	30.0	132.0	92.0	82.5	99.0	75.5
Merged-chr17-56474564-2	chr17	56474083	56475083	+	870.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252455, intron 1 of 27)	CpG	1897.0	NM_001252455	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44232687-4	chr9	44232120	44233120	+	870.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 1 of 15)	MIRb|SINE|MIR	1426.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	33.0	125.5	90.5	32.0	108.0	78.0
Merged-chr8-104338102-2	chr8	104337602	104338602	+	870.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2492.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43445133-2	chr7	43444633	43445633	+	870.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_075104, intron 1 of 5)	intron (NR_075104, intron 1 of 5)	1061.0	NR_075104	110826.0	Mm.30200	NM_026695	ENSMUSG00000004610	Etfb	0610009I16Rik|2810441H06Rik	electron transferring flavoprotein, beta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95494576-2	chr13	95494081	95495081	+	870.75	f0_c57.idr|f1_balb.idr	Intergenic	L1MC5|LINE|L1	-15926.0	NM_001081159	268686.0	Mm.291249	NM_001081159	ENSMUSG00000021679	S100z	Gm625	S100 calcium binding protein, zeta	protein-coding	48.0	203.5	123.5	0.5	3.5	2.0
Merged-chr4-46389864-4	chr4	46389379	46390379	+	870.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029086)	promoter-TSS (NM_029086)	-442.0	NM_001347095	74753.0	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79920074-4	chr11	79919568	79920568	+	870.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42319.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	0.0	0.0	5.0	0.0	0.0	1.0
Merged-chr11-79674444-4	chr11	79673967	79674967	+	870.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045898, exon 2 of 3)	non-coding (NR_045898, exon 2 of 3)	619.0	NR_045898	72218.0	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA	7.5	15.5	4.0	3.0	2.5	5.0
Merged-chr6-97407552-3	chr6	97407039	97408039	+	870.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	51747.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125385363-7	chr5	125384855	125385855	+	870.7041019999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019639)	TTS (NM_019639)	4662.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	3.0	0.0	1.5	3.5	5.5	1.0
Merged-chr14-72595491-3	chr14	72594992	72595992	+	870.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 4 of 25)	intron (NM_207636, intron 4 of 25)	114511.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14992968-4	chr8	14992480	14993480	+	870.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037736, intron 26 of 27)	intron (NM_001037736, intron 26 of 27)	-18045.0	NM_029116	74901.0	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	0.0	2.5	0.0	0.0	0.5	4.5
Merged-chr18-20717112-3	chr18	20716610	20717610	+	870.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 3 of 8)	MER5A|DNA|hAT-Charlie	29294.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94149280-3	chr11	94148734	94149734	+	870.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-62220.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-43420513-3	chr6	43420024	43421024	+	870.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 8 of 8)	intron (NM_013861, intron 8 of 8)	-21905.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-64436277-3	chr11	64435762	64436762	+	870.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028445, exon 1 of 1)	non-coding (NR_028445, exon 1 of 1)	412.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	0.5	2.0	3.0	2.5	5.5	0.0
Merged-chr5-124446889-3	chr5	124446357	124447357	+	870.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001310727, exon 1 of 7)	5' UTR (NM_001310727, exon 1 of 7)	153.0	NM_001310727	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64886315-4	chr5	64885809	64886809	+	870.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46390.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-70971222-4	chr2	70970720	70971720	+	870.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 7 of 9)	intron (NM_145524, intron 7 of 9)	47154.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85615740-3	chr12	85615243	85616243	+	870.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 2 of 3)	intron (NM_001205053, intron 2 of 3)	15725.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164455989-3	chr2	164455495	164456495	+	870.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4976.0	NM_025575	66460.0	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94503318-3	chr16	94502815	94503815	+	870.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 5 of 7)	intron (NM_007834, intron 5 of 7)	23314.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	3.0	9.0	7.5	1.0	4.5	9.0
Merged-chr2-150875617-3	chr2	150875079	150876079	+	870.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 1 of 12)	RLTR25B|LTR|ERVK	29152.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-143917806-4	chr2	143917294	143918294	+	870.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019771, intron 1 of 3)	intron (NM_019771, intron 1 of 3)	2463.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152029141-4	chr4	152028585	152029585	+	870.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031867, intron 5 of 5)	intron (NM_031867, intron 5 of 5)	-1414.0	NM_133879	100090.0	Mm.24661	NM_133879	ENSMUSG00000028952	Zbtb48	0610011D15Rik|AI327031|Hkr3|TZAP	zinc finger and BTB domain containing 48	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-56887644-3	chr14	56887153	56888153	+	870.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360643, intron 1 of 24)	intron (NM_001360643, intron 1 of 24)	810.0	NM_001360643	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117223174-2	chr10	117222674	117223674	+	870.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026570, intron 1 of 6)	intron (NM_026570, intron 1 of 6)	1333.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116464052-4	chr11	116463562	116464562	+	870.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-9715.0	NM_001033267	217341.0	Mm.387352	NM_001033267	ENSMUSG00000070331	Qrich2	Gm66	glutamine rich 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-23015039-3	chr2	23014545	23015545	+	870.6555179999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	RMER17B|LTR|ERVK	25196.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44002742-4	chr10	44002259	44003259	+	870.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172393, intron 1 of 19)	intron (NM_172393, intron 1 of 19)	2087.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-56101240-4	chr9	56100719	56101719	+	870.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	11243.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-34388808-4	chr4	34388338	34389338	+	870.625	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR40|LTR|ERVK	-161777.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-7613799-4	chr3	7613321	7614321	+	870.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008371)	promoter-TSS (NM_008371)	-61.0	NM_001313888	16196.0	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	1.0	4.5	1.5	0.0	1.0	0.0
Merged-chr8-61607750-4	chr8	61607205	61608205	+	870.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	-16536.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	72.5	167.5	91.0	75.0	132.0	89.0
Merged-chr2-35462620-6	chr2	35462072	35463072	+	870.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1123.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40993555-4	chr19	40993049	40994049	+	870.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008528, intron 1 of 16)	RSINE1|SINE|B4	986.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	23.5	27.5	13.0	4.5	27.5	33.5
Merged-chr15-79270501-4	chr15	79269993	79270993	+	870.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177580, intron 7 of 13)	CpG	15016.0	NM_177580	207495.0	Mm.309647	NM_177580	ENSMUSG00000018126	Baiap2l2	BC048937	BAI1-associated protein 2-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34864608-4	chr13	34864115	34865115	+	870.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10879.0	NM_013830	19134.0	Mm.10027	NM_013830	ENSMUSG00000021413	Prpf4b	2610037H07|Prp4|Prp4k|Prpk|cbp143	pre-mRNA processing factor 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98790003-3	chr11	98789521	98790521	+	870.611145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-5495.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-65102591-3	chr14	65102093	65103093	+	870.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4487.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146779108-3	chr3	146778609	146779609	+	870.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011100, intron 1 of 9)	intron (NM_011100, intron 1 of 9)	2307.0	NM_001164200	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9487575-3	chr18	9487082	9488082	+	870.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37428.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0.0	8.5	0.0	2.0	0.0	0.0
Merged-chr8-122282707-2	chr8	122282207	122283207	+	870.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009569, intron 1 of 9)	CpG	566.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96343431-4	chr10	96342935	96343935	+	870.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	117228.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128664170-4	chr4	128663642	128664642	+	870.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	9440.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-137945673-4	chr3	137945194	137946194	+	870.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 4 of 8)	intron (NM_011932, intron 4 of 8)	27139.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	2.5	0.0	5.0	2.0	0.0	6.5
Merged-chr11-59880109-2	chr11	59879609	59880609	+	870.5833130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32036.0	NM_134029	103850.0	Mm.41761	NM_134029	ENSMUSG00000032615	Nt5m	2010013E09Rik|AI846937|dNT-2	5',3'-nucleotidase, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108307906-2	chr9	108307406	108308406	+	870.5625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313961, intron 1 of 5)	intron (NM_001313961, intron 1 of 5)	1109.0	NM_001313962	11848.0	Mm.757	NM_016802	ENSMUSG00000007815	Rhoa	Arha|Arha1|Arha2	ras homolog family member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-24386649-3	chr8	24386147	24387147	+	870.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52299.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56427883-3	chr18	56427375	56428375	+	870.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360917, intron 1 of 13)	ORR1F|LTR|ERVL-MaLR	-4257.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-33962746-3	chr6	33962220	33963220	+	870.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 17 of 17)	intron (NM_009148, intron 17 of 17)	-66728.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165660942-3	chr1	165660444	165661444	+	870.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 2 of 5)	intron (NM_001038846, intron 2 of 5)	-26403.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91869506-3	chr12	91868986	91869986	+	870.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20329.0	NM_011344	20338.0	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32542287-3	chr11	32541798	32542798	+	870.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	9032.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	23.5	75.0	66.5	37.5	93.0	91.0
Merged-chr8-10794794-4	chr8	10794288	10795288	+	870.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87666.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25183505-2	chr17	25183050	25184050	+	870.541626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1011.0	NM_183150	214489.0	Mm.274433	NM_183150	ENSMUSG00000067722	BC003965	Ccsmst1	cDNA sequence BC003965	protein-coding	1.0	7.0	8.0	5.5	9.5	5.5
Merged-chr15-81080601-4	chr15	81080034	81081034	+	870.535706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	24513.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	1.0	6.0	7.5	5.5	2.5	4.0
Merged-chr18-76317800-2	chr18	76317300	76318300	+	870.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	55355.0	NM_001311070	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	7.5	0.0	0.0	6.0	1.0	0.0
Merged-chr13-37537925-2	chr13	37537424	37538424	+	870.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	192579.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	41.0	118.0	76.5	2.5	2.5	6.0
Merged-chr5-150589835-2	chr5	150589335	150590335	+	870.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133898, intron 1 of 4)	RSINE1|SINE|B4	4690.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77961217-2	chr18	77960717	77961717	+	870.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195633, intron 10 of 43)	MTC|LTR|ERVL-MaLR	22750.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87584876-3	chr16	87584344	87585344	+	870.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144854, intron 4 of 4)	intron (NM_144854, intron 4 of 4)	31514.0	NM_144854	224419.0	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr5-129008040-4	chr5	129007572	129008572	+	870.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152615, intron 1 of 11)	intron (NR_152615, intron 1 of 11)	500.0	NR_152615	13852.0	Mm.260716	NM_007941	ENSMUSG00000029428	Stx2	AW538950|Epim|G1-536-1|Syn-2|repro34	syntaxin 2	protein-coding	28.0	25.5	22.0	13.5	10.5	22.5
Merged-chr16-57397136-2	chr16	57396636	57397636	+	870.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	43859.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.0	1.0	0.0	0.0	2.0	0.0
Merged-chr7-41502786-2	chr7	41502286	41503286	+	870.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-2896.0	NM_001033530	101835.0	Mm.370336	NM_001033530	ENSMUSG00000074166	AW146154	AI451288	expressed sequence AW146154	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-55166563-2	chr6	55166042	55167042	+	870.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	8448.0	NM_009349	21743.0	Mm.299	NM_009349	ENSMUSG00000003477	Inmt	Temt	indolethylamine N-methyltransferase	protein-coding	11.5	5.0	5.0	2.5	8.0	17.0
Merged-chr16-94723237-2	chr16	94722737	94723737	+	870.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3A1|LTR|ERVK	111818.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123212046-4	chr8	123211530	123212530	+	870.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177279)	promoter-TSS (NM_177279)	758.0	NM_145606	234852.0	Mm.41596	NM_145606	ENSMUSG00000000743	Chmp1a	2900018H07Rik|Pcoln3	charged multivesicular body protein 1A	protein-coding	47.5	92.5	80.5	46.5	96.0	78.5
Merged-chr14-72600523-4	chr14	72599989	72600989	+	870.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 3 of 25)	intron (NM_207636, intron 3 of 25)	109514.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78551707-2	chr11	78551207	78552207	+	870.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133706)	promoter-TSS (NM_133706)	-972.0	NM_133706	69071.0	Mm.29431	NM_133706	ENSMUSG00000037278	Tmem97	1810014L12Rik|AI115531|AL022956|D11Bhm182e	transmembrane protein 97	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117940411-2	chr10	117939894	117940894	+	870.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045342, intron 3 of 3)	B1_Mur3|SINE|Alu	14935.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	47.0	112.5	53.0	25.5	60.5	51.5
Merged-chr8-83089746-4	chr8	83089217	83090217	+	870.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177378, exon 7 of 7)	3' UTR (NM_177378, exon 7 of 7)	-75635.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	10.5	19.0	16.0	20.5	34.0	23.0
Merged-chr7-106526856-2	chr7	106526329	106527329	+	870.5	f0_balb.idr|f1_balb.idr	Intergenic	Lx|LINE|L1	-85756.0	NR_003967	209380.0	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	19.0	27.0	16.0	23.0	86.0	49.5
Merged-chr6-67041554-2	chr6	67041054	67042054	+	870.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040278, intron 1 of 6)	MTC|LTR|ERVL-MaLR	-4147.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76771416-4	chr11	76770923	76771923	+	870.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7845.0	NM_001356321	53334.0	Mm.20931	NM_016810	ENSMUSG00000010392	Gosr1	AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28	golgi SNAP receptor complex member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63918420-2	chr9	63917920	63918920	+	870.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103639.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86470765-2	chr6	86470265	86471265	+	870.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_146170)	TTS (NM_146170)	10065.0	NR_131125	320486.0	Mm.391625	NR_131125	ENSMUSG00000085589	A430078I02Rik	T25621	RIKEN cDNA A430078I02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71161756-4	chr17	71161235	71162235	+	870.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	-21797.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	20.0	16.0	3.5	11.5	14.0	7.5
Merged-chr5-139437694-3	chr5	139437201	139438201	+	870.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	14522.0	NM_029771	76854.0	Mm.389706	NM_029771	ENSMUSG00000053647	Gper1	6330420K13Rik|CMKRL2|Ceprl|FEG-1|GPCR-Br|Gper|Gpr30	G protein-coupled estrogen receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37279483-2	chr10	37278983	37279983	+	870.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140557.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148655165-4	chr2	148654664	148655664	+	870.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17451.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-48995177-2	chr13	48994677	48995677	+	870.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27065.0	NR_015601	68128.0	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-81483844-2	chr12	81483344	81484344	+	870.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001309847, intron 3 of 5)	intron (NM_001309847, intron 3 of 5)	1007.0	NR_132135	66272.0	Mm.439970	NM_025461	ENSMUSG00000091803	Cox16	1810020G14Rik|1810055I05Rik|BB388670	cytochrome c oxidase assembly protein 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67297610-4	chr5	67297120	67298120	+	870.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9335.0	NM_178651	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	81.0	105.5	91.5	60.5	145.0	73.0
Merged-chr9-95570225-2	chr9	95569725	95570725	+	870.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10408.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60791656-2	chr18	60791158	60792158	+	870.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12191.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	4.5	8.5	8.0	5.0	6.5	5.5
Merged-chr6-119373431-4	chr6	119372855	119373855	+	870.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197985, intron 1 of 7)	intron (NM_197985, intron 1 of 7)	15379.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-67997080-3	chr8	67996600	67997600	+	870.4722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-22526.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43332510-3	chr17	43332017	43333017	+	870.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27914.0	NM_001357332	224792.0	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	8.5	2.5	12.5	1.0	1.0	12.5
Merged-chr6-134538940-3	chr6	134538436	134539436	+	870.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 2 of 22)	intron (NM_008514, intron 2 of 22)	27977.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	117.0	200.0	170.5	51.0	103.0	71.0
Merged-chr5-115268456-3	chr5	115267950	115268950	+	870.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302449, intron 1 of 16)	intron (NM_001302449, intron 1 of 16)	4445.0	NM_001302448	50849.0	Mm.30051	NM_016698	ENSMUSG00000041740	Rnf10	AA675014|RIE2|mKIAA0262	ring finger protein 10	protein-coding	6.0	1.0	3.5	7.5	15.5	2.0
Merged-chr2-5474556-3	chr2	5474017	5475017	+	870.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290375, intron 2 of 10)	ORR1C2|LTR|ERVL-MaLR	95127.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	15.5	24.0	31.5	15.0	4.5	20.0
Merged-chr11-76677227-4	chr11	76676721	76677721	+	870.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2652.0	NM_177709	237858.0	Mm.127006	NM_177709	ENSMUSG00000046275	Tusc5	C130069F04Rik|DSPB1|Lost1	tumor suppressor candidate 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-41575334-4	chr3	41574844	41575844	+	870.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130186, intron 1 of 10)	intron (NM_001130186, intron 1 of 10)	10464.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	3.0	0.0	9.0	15.0	11.0	5.5
Merged-chr4-133688581-3	chr4	133688126	133689126	+	870.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080819, intron 12 of 19)	intron (NM_001080819, intron 12 of 19)	-15460.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	1.5	1.0	8.5	0.5	2.0	10.0
Merged-chr9-58210174-4	chr9	58209687	58210687	+	870.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5868.0	NM_001161541	320563.0	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44833344-3	chr16	44832830	44833830	+	870.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_207244, exon 4 of 6)	exon (NM_207244, exon 4 of 6)	12602.0	NM_207244	239849.0	Mm.445045	NM_207244	ENSMUSG00000062082	Cd200r4	F630107N04Rik|MCD200RLa	CD200 receptor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-58689384-3	chr3	58688885	58689885	+	870.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009174, intron 1 of 1)	Lx|LINE|L1	3003.0	NM_009174	20439.0	Mm.2847	NM_009174	ENSMUSG00000036432	Siah2	AA415433|Sinh2	siah E3 ubiquitin protein ligase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123049392-4	chr5	123048854	123049854	+	870.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2338.0	NM_001347456	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	4.0	0.0	0.5	5.0	4.5	0.5
Merged-chr2-84541636-4	chr2	84541157	84542157	+	870.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34784.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-82755146-3	chr8	82754613	82755613	+	870.3666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERVK10D3_LTR|LTR|ERVK	19013.0	NM_145600	30932.0	Mm.269248	NM_145600	ENSMUSG00000031711	Zfp330	BC008086|Noa36|Znf330	zinc finger protein 330	protein-coding	3.0	4.5	0.0	1.5	0.5	1.5
Merged-chr8-70647017-4	chr8	70646534	70647534	+	870.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023217, exon 5 of 5)	3' UTR (NM_023217, exon 5 of 5)	12704.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	7.5	33.5	8.0	2.0	2.0	0.0
Merged-chr9-62933158-4	chr9	62932635	62933635	+	870.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 2 of 13)	intron (NM_019663, intron 2 of 13)	47744.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46325441-2	chr17	46324941	46325941	+	870.333374	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145140, exon 1 of 20)	5' UTR (NM_145140, exon 1 of 20)	325.0	NM_145140	224814.0	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105199532-3	chr1	105199025	105200025	+	870.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-156482.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41912467-3	chr19	41911978	41912978	+	870.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023418, intron 1 of 3)	CpG	607.0	NM_023418	18648.0	Mm.16783	NM_023418	ENSMUSG00000011752	Pgam1	2310050F24Rik|Pgam-1	phosphoglycerate mutase 1	protein-coding	15.0	15.5	13.5	10.0	30.5	18.0
Merged-chr16-36660467-3	chr16	36659950	36660950	+	870.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	B1_Mus1|SINE|Alu	5627.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24685197-3	chr16	24684700	24685700	+	870.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 7 of 12)	(A)n|Simple_repeat|Simple_repeat	-36655.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-5321001-4	chr5	5320475	5321475	+	870.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	-54907.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110503019-3	chr12	110502526	110503526	+	870.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081457, intron 1 of 12)	intron (NM_001081457, intron 1 of 12)	17287.0	NM_012023	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73239065-3	chr14	73238579	73239579	+	870.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175116, exon 1 of 1)	exon (NM_175116, exon 1 of 1)	1188.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45107223-3	chr7	45106718	45107718	+	870.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3396.0	NM_010189	14132.0	Mm.3303	NM_010189	ENSMUSG00000003420	Fcgrt	FcRn	Fc receptor, IgG, alpha chain transporter	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132264138-4	chr2	132263665	132264665	+	870.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291040, intron 1 of 3)	intron (NM_001291040, intron 1 of 3)	1017.0	NM_138651	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-55408930-1	chr18	55408430	55409430	+	870.3333130000001	f0_balb.idr	Intergenic	Intergenic	-416339.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	15.0	40.5	39.5	55.0	70.5	60.5
Merged-chr2-167360234-3	chr2	167359738	167360738	+	870.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-11060.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21736459-4	chr19	21735980	21736980	+	870.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41860.0	NM_001033759	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61113016-3	chr18	61112510	61113510	+	870.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 6 of 21)	intron (NM_001037859, intron 6 of 21)	-4458.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	1.0	5.0	0.0	5.0	7.5	2.5
Merged-chr8-119347669-3	chr8	119347175	119348175	+	870.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024219, intron 3 of 3)	intron (NM_024219, intron 3 of 3)	3137.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126889209-2	chr7	126888709	126889709	+	870.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_026827, intron 4 of 5)	intron (NM_026827, intron 4 of 5)	-4242.0	NM_001163774	381921.0	Mm.259634	NM_001163774	ENSMUSG00000059981	Taok2	1110033K02Rik|B230344N16|MAP3K17|PSK|PSK1|TAO1|TAO2|mKIAA0881	TAO kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-37815936-2	chr2	37815436	37816436	+	870.2999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_146122, intron 20 of 21)	intron (NM_146122, intron 20 of 21)	39687.0	NM_001163566	241324.0	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20412146-4	chr16	20411655	20412655	+	870.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176839, intron 2 of 6)	intron (NM_176839, intron 2 of 6)	14239.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-82858548-4	chr4	82858063	82859063	+	870.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149737, intron 1 of 7)	intron (NR_149737, intron 1 of 7)	1110.0	NR_149737	68268.0	Mm.32047	NM_026647	ENSMUSG00000028403	Zdhhc21	9130404H11Rik|AL024349|D130004H04Rik|dep	zinc finger, DHHC domain containing 21	protein-coding	23.5	9.0	20.5	7.0	16.5	11.5
Merged-chr13-20157778-4	chr13	20157264	20158264	+	870.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	67257.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61121531-3	chr18	61120994	61121994	+	870.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 11 of 21)	intron (NM_001037859, intron 11 of 21)	4026.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21778682-3	chr16	21778183	21779183	+	870.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023737, intron 1 of 6)	MLT1J|LTR|ERVL-MaLR	9151.0	NM_023737	74147.0	Mm.28100	NM_023737	ENSMUSG00000022853	Ehhadh	1300002P22Rik|HD|L-PBE|LBFP|LBP|MFP|MFP1|PBFE	enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-50418887-4	chr13	50418368	50419368	+	870.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_154272, intron 1 of 10)	RLTR30B_MM|LTR|ERV1	1004.0	NR_154273	109082.0	Mm.18638	NM_175401	ENSMUSG00000037816	Fbxw17	1110064L07Rik|C85886	F-box and WD-40 domain protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25624484-4	chr15	25623990	25624990	+	870.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 1 of 40)	intron (NM_019472, intron 1 of 40)	1940.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75966674-2	chr11	75966174	75967174	+	870.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-33238.0	NM_198637	74230.0	Mm.271247	NM_198637	ENSMUSG00000053783	1700016K19Rik	Liat1	RIKEN cDNA 1700016K19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-56891622-4	chr9	56891116	56892116	+	870.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139001, intron 5 of 9)	intron (NM_139001, intron 5 of 9)	26512.0	NM_139001	121021.0	Mm.41329	NM_139001	ENSMUSG00000032911	Cspg4	4732461B14Rik|AN2|NG2	chondroitin sulfate proteoglycan 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17702562-2	chr16	17702082	17703082	+	870.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285886, intron 2 of 16)	ORR1C1|LTR|ERVL-MaLR	20318.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-107503489-3	chr1	107503001	107504001	+	870.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-7922.0	NM_001174170	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr2-145857963-2	chr2	145857463	145858463	+	870.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 7 of 12)	intron (NM_028724, intron 7 of 12)	-45278.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-131977447-4	chr4	131976941	131977941	+	870.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 9 of 20)	intron (NM_183428, intron 9 of 20)	55670.0	NM_001201367	623230.0	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123896008-2	chr5	123895491	123896491	+	870.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-11284.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	4.0	9.5	0.0	3.0	2.0	0.0
Merged-chr13-65226438-4	chr13	65225955	65226955	+	870.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-20739.0	NM_175290	97895.0	Mm.315815	NM_175290	ENSMUSG00000032999	Nlrp4f	C330026N02Rik|C86045|Nalp-kappa|Nalp4f	NLR family, pyrin domain containing 4F	protein-coding	0.0	0.0	0.0	0.0	3.0	0.0
Merged-chr15-97248474-3	chr15	97247969	97248969	+	870.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 1 of 5)	intron (NM_172293, intron 1 of 5)	-1182.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8983266-3	chr3	8982773	8983773	+	870.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-19127.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	188.0	340.5	303.0	132.5	347.0	205.5
Merged-chr8-70355890-3	chr8	70355353	70356353	+	870.214294	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2574.0	NM_001122829	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	5.0	12.5	9.0	18.0	23.5	24.5
Merged-chr1-86529190-6	chr1	86528720	86529720	+	870.211121	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001360831, exon 2 of 5)	exon (NM_001360831, exon 2 of 5)	2663.0	NM_001360830	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16999877-4	chr7	16999388	17000388	+	870.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5300.0	NM_001101535	434130.0	Mm.459162	NM_001101535	ENSMUSG00000041117	Ccdc8	-	coiled-coil domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr14-26531981-4	chr14	26531474	26532474	+	870.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 1 of 22)	intron (NM_001310445, intron 1 of 22)	2650.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22061859-4	chr16	22061341	22062341	+	870.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 15 of 15)	intron (NM_183029, intron 15 of 15)	52357.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-167340525-5	chr1	167339990	167340990	+	870.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-9501.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-53662664-4	chr5	53662174	53663174	+	870.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	35914.0	NR_024201	19866.0		NR_024201	ENSMUSG00000089083	Rnu7	-	U7 small nuclear RNA	snRNA	0.0	2.0	0.5	0.0	2.0	0.5
Merged-chr18-61126375-4	chr18	61125852	61126852	+	870.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 15 of 21)	intron (NM_001037859, intron 15 of 21)	8884.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	20.0	43.0	12.0	8.0	25.5	16.0
Merged-chr9-37086333-3	chr9	37085837	37086837	+	870.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 1 of 12)	Lx8b|LINE|L1	60985.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	2.5	1.0	0.0	1.0	4.0	2.5
Merged-chr2-142858968-4	chr2	142858456	142859456	+	870.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 3 of 26)	intron (NM_001355123, intron 3 of 26)	42508.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4660030-4	chr11	4659542	4660542	+	870.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029291, intron 8 of 19)	intron (NM_029291, intron 8 of 19)	22249.0	NM_029291	75452.0	Mm.439906	NM_029291	ENSMUSG00000020412	Ascc2	1700011I11Rik|2610034L15Rik|AI482016|ASC1p100|AW046480	activating signal cointegrator 1 complex subunit 2	protein-coding	1.0	0.0	3.0	1.0	0.0	3.0
Merged-chr4-45532499-4	chr4	45532009	45533009	+	870.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1681.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	2.5	3.0	3.0	3.0	5.5	5.5
Merged-chr13-46168926-4	chr13	46168426	46169426	+	870.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104795.0	NM_001005422	380842.0	Mm.188108	NM_001005422	ENSMUSG00000063529	Stmnd1	Gm1574	stathmin domain containing 1	protein-coding	1.0	9.5	1.0	0.0	12.5	0.5
Merged-chr16-93835343-3	chr16	93834844	93835844	+	870.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045529, intron 1 of 16)	intron (NM_001045529, intron 1 of 16)	3223.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	0.0	26.0	4.5	0.0	25.0	3.5
Merged-chr1-148821739-4	chr1	148821231	148822231	+	870.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1100708.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19074014-2	chr7	19073514	19074514	+	870.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_031255, intron 5 of 5)	intron (NM_031255, intron 5 of 5)	-2186.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120857809-4	chr10	120857312	120858312	+	870.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038023, intron 1 of 2)	intron (NR_038023, intron 1 of 2)	183.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139950554-4	chr7	139950085	139951085	+	870.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6729.0	NM_009482	22286.0	Mm.10205	NM_009482	ENSMUSG00000047751	Utf1	AI505934	undifferentiated embryonic cell transcription factor 1	protein-coding	3.5	27.5	9.5	15.0	20.0	8.0
Merged-chr8-27137122-4	chr8	27136629	27137629	+	870.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5781.0	NR_045840	71082.0	Mm.395259	NR_045840		4933416M07Rik	-	RIKEN cDNA 4933416M07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-126500724-4	chr2	126500217	126501217	+	870.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359975)	promoter-TSS (NM_001359975)	-870.0	NM_001359975	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149779130-4	chr4	149778553	149779553	+	870.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-4786.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0.0	4.0	0.0	0.0	4.0	0.0
Merged-chr1-46890756-2	chr1	46890256	46891256	+	870.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356417, intron 2 of 10)	intron (NM_001356417, intron 2 of 10)	35020.0	NM_001356417	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30594731-4	chr7	30594220	30595220	+	870.1124880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153655, intron 1 of 3)	intron (NR_153655, intron 1 of 3)	-1778.0	NM_021397	58206.0	Mm.116789	NM_021397	ENSMUSG00000006310	Zbtb32	4930524C15Rik|FAXF|FAZF|PLZP|Rog|Tzfp	zinc finger and BTB domain containing 32	protein-coding	11.5	14.0	11.5	8.5	15.5	15.0
Merged-chr13-100697646-3	chr13	100697129	100698129	+	870.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_183115)	TTS (NM_183115)	28148.0	NM_001168386	76041.0	Mm.23977	NM_183115	ENSMUSG00000048924	Ccdc125	5830436D01Rik|AL023012	coiled-coil domain containing 125	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83872976-4	chr17	83872474	83873474	+	870.1083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18556.0	NR_155491	320021.0	Mm.379475	NR_155490		C430042M11Rik	-	RIKEN cDNA C430042M11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135134706-4	chr5	135134217	135135217	+	870.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152882, intron 15 of 16)	intron (NR_152882, intron 15 of 16)	-14994.0	NM_013763	27368.0	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27821538-2	chr17	27821020	27822020	+	870.083374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271511)	promoter-TSS (NM_001271511)	-978.0	NM_001271511	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	64.5	215.5	199.0	100.5	260.5	235.0
Merged-chr2-45034222-4	chr2	45033690	45034690	+	870.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-11013.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34831353-4	chr1	34830865	34831865	+	870.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160236, intron 2 of 6)	intron (NM_001160236, intron 2 of 6)	11685.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167350620-4	chr2	167350113	167351113	+	870.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1435.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118175428-2	chr11	118174928	118175928	+	870.0714109999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 10 of 12)	intron (NM_001112700, intron 10 of 12)	37314.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27186160-5	chr14	27185715	27186715	+	870.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	intron (NM_001289686, intron 2 of 12)	42222.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-91425592-4	chr8	91425091	91426091	+	870.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011936, intron 3 of 8)	MTD|LTR|ERVL-MaLR	112066.0	NM_011936	26383.0	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	26.0	40.5	24.0	21.0	41.5	27.5
Merged-chr5-25099731-3	chr5	25099202	25100202	+	870.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 1 of 15)	CpG	940.0	NM_145401	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41274665-3	chr19	41274086	41275086	+	870.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 16 of 16)	ORR1A4|LTR|ERVL-MaLR	-10582.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	16.0	19.5	8.5	3.0	20.0	6.5
Merged-chr7-90017367-4	chr7	90016851	90017851	+	870.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-11808.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	23.5	36.0	50.5	27.5	34.5	38.5
Merged-chr2-117169274-4	chr2	117168760	117169760	+	870.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277256, intron 4 of 4)	intron (NM_001277256, intron 4 of 4)	-15867.0	NR_030440	732489.0		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-83610080-4	chr9	83609556	83610556	+	870.0458369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61718.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	4.0	8.0	0.5	0.5	7.0	3.5
Merged-chr5-97320302-4	chr5	97319802	97320802	+	870.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	72028.0	NM_001033191	97243.0	Mm.11746	NM_001033191	ENSMUSG00000046000	Naa11	Ard1b|Ard2|C80008	N(alpha)-acetyltransferase 11, NatA catalytic subunit	protein-coding	0.0	6.5	5.5	13.5	7.0	13.0
Merged-chr19-6908395-4	chr19	6907935	6908935	+	870.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012021, intron 1 of 5)	intron (NM_012021, intron 1 of 5)	-1263.0	NM_001166370	67674.0	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98733567-2	chr12	98733067	98734067	+	870.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011877, exon 2 of 19)	exon (NM_011877, exon 2 of 19)	1078.0	NM_011877	24000.0	Mm.4420	NM_011877	ENSMUSG00000021009	Ptpn21	PTPD1|PTPRL10	protein tyrosine phosphatase, non-receptor type 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80073025-3	chr15	80072521	80073521	+	870.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5558.0	NR_028282	100302601.0		NR_028282	ENSMUSG00000077734	Snord83b	MBII-10	small nucleolar RNA, C/D box 83B	snoRNA	22.0	59.0	37.5	49.5	29.5	36.0
Merged-chr17-56756976-2	chr17	56756476	56757476	+	870.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008738, intron 1 of 2)	CpG	572.0	NM_008738	18188.0	Mm.8074	NM_008738	ENSMUSG00000039481	Nrtn	NTN	neurturin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129740467-3	chr6	129739944	129740944	+	870.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177155)	promoter-TSS (NM_177155)	40.0	NM_177155	320407.0	Mm.123265	NM_177155	ENSMUSG00000043932	Klri2	A530090P03Rik	killer cell lectin-like receptor family I member 2	protein-coding	0.5	4.0	3.5	0.5	1.0	10.5
Merged-chr11-76457074-3	chr11	76456578	76457578	+	870.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 9 of 21)	intron (NM_001346670, intron 9 of 21)	11387.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	4.0	0.0	1.0	0.0	0.0	2.0
Merged-chr11-18317351-2	chr11	18316804	18317804	+	870.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	221318.0	NR_131129	327872.0		NR_131129	ENSMUSG00000085453	Gm12018	-	predicted gene 12018	ncRNA	0.0	0.0	0.0	10.0	2.0	4.0
Merged-chr15-100224619-2	chr15	100224119	100225119	+	870.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3240.0	NM_007497	11908.0	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84450503-1	chr12	84450003	84451003	+	870.0	f0_balb.idr	intron (NM_134042, intron 1 of 11)	intron (NM_134042, intron 1 of 11)	521.0	NM_134042	104776.0	Mm.247510	NM_134042	ENSMUSG00000021238	Aldh6a1	1110038I05Rik|Mmsdh	aldehyde dehydrogenase family 6, subfamily A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97990371-2	chr3	97989871	97990871	+	870.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-23167.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84645608-3	chr2	84645112	84646112	+	870.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007615, intron 1 of 19)	AT_rich|Low_complexity|Low_complexity	3868.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	10.0	8.0	8.0	10.0	9.0	7.5
Merged-chr10-71237124-2	chr10	71236624	71237624	+	870.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009360, intron 1 of 6)	intron (NM_009360, intron 1 of 6)	920.0	NM_009360	21780.0	Mm.229292	NM_009360	ENSMUSG00000003923	Tfam	AI661103|Hmgts|mtTFA|tsHMG	transcription factor A, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119238896-2	chr4	119238396	119239396	+	870.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019782, intron 5 of 15)	intron (NM_019782, intron 5 of 15)	5067.0	NM_001042411	56401.0	Mm.27961	NM_019782	ENSMUSG00000028641	P3h1	2410024C15Rik|Gros1|Lepre1	prolyl 3-hydroxylase 1	protein-coding	0.0	0.0	1.5	3.0	0.0	2.0
Merged-chr5-139356480-2	chr5	139355980	139356980	+	870.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160265, intron 7 of 8)	intron (NM_001160265, intron 7 of 8)	3863.0	NM_001160265	545817.0	Mm.482474	NM_001160265	ENSMUSG00000029541	Cyp2w1	Gm455	cytochrome P450, family 2, subfamily w, polypeptide 1	protein-coding	0.0	0.0	0.0	1.0	1.0	0.0
Merged-chr4-3508586-3	chr4	3508083	3509083	+	870.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28507.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182554185-3	chr1	182553684	182554684	+	870.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10823.0	NM_001145806	170725.0	Mm.189201	NM_130890	ENSMUSG00000038599	Capn8	nCL-2|nCL-2'	calpain 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117862090-2	chr10	117861577	117862577	+	870.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-16103.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	3.0	0.0	0.0	3.0	0.0	0.0
Merged-chr18-47944864-3	chr18	47944364	47945364	+	870.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045404, intron 2 of 3)	intron (NR_045404, intron 2 of 3)	22023.0	NR_045404	414127.0	Mm.450768	NR_045404		G630055G22Rik	-	RIKEN cDNA G630055G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-80181212-2	chr1	80180712	80181712	+	870.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32732.0	NM_173425	241128.0	Mm.145511	NM_173425	ENSMUSG00000043230	Fam124b	A830043J08Rik	family with sequence similarity 124, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-7703695-3	chr18	7703178	7704178	+	870.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76815.0	NM_001161620	75739.0	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	0.0	1.0	0.5	0.0	0.0	0.5
Merged-chr11-106150428-2	chr11	106149928	106150928	+	870.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 12 of 15)	intron (NM_011947, intron 12 of 15)	9499.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	1.0	1.5	2.0	3.5	11.0	3.5
Merged-chr2-26459040-2	chr2	26458540	26459540	+	870.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152207, exon 3 of 3)	non-coding (NR_152207, exon 3 of 3)	11079.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69996285-4	chr11	69995790	69996790	+	870.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291126)	promoter-TSS (NM_001291126)	524.0	NM_030064	78246.0	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78005659-2	chr9	78005134	78006134	+	870.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46324.0	NM_008103	14531.0	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1	protein-coding	0.0	0.5	0.5	2.0	0.0	2.5
Merged-chr7-24438085-1	chr7	24437585	24438585	+	870.0	f1_c57bl6.idr	intron (NM_199013, intron 1 of 2)	intron (NM_199013, intron 1 of 2)	-2553.0	NM_001358033	210145.0	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	2.5	1.0	0.0	2.5	2.5	0.0
Merged-chr9-107524197-1	chr9	107523697	107524697	+	870.0	f1_balb.idr	intron (NM_001174048, intron 24 of 37)	intron (NM_001174048, intron 24 of 37)	-9748.0	NM_019704	56395.0	Mm.260153	NM_019704	ENSMUSG00000010045	Tmem115	C78915|Pl6|Pp6	transmembrane protein 115	protein-coding	0.0	0.0	0.0	0.0	2.5	0.0
Merged-chr19-6943043-2	chr19	6942543	6943543	+	870.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177361)	promoter-TSS (NM_001177361)	481.0	NM_001285453	12015.0	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3422657-2	chr2	3422157	3423157	+	870.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355205)	promoter-TSS (NM_001355205)	-9.0	NM_008579	104362.0	Mm.2688	NM_008579	ENSMUSG00000026650	Meig1	MLZ-278|Meg1	meiosis expressed gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150897247-4	chr2	150896743	150897743	+	870.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 1 of 12)	B1_Mur4|SINE|Alu	7488.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101262857-2	chr11	101262357	101263357	+	870.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175638, exon 2 of 19)	exon (NM_175638, exon 2 of 19)	2290.0	NM_175638	69847.0	Mm.23656	NM_175638	ENSMUSG00000035112	Wnk4	2010002J11Rik|Pha2b|Prkwnk4	WNK lysine deficient protein kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-179990350-2	chr2	179989850	179990850	+	870.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	13497.0	NR_033782	66730.0	Mm.31773	NR_033782	ENSMUSG00000085704	4921531C22Rik	-	RIKEN cDNA 4921531C22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	4.0
Merged-chr11-76782038-2	chr11	76781538	76782538	+	870.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007754, exon 21 of 21)	3' UTR (NM_007754, exon 21 of 21)	-18460.0	NM_001356321	53334.0	Mm.20931	NM_016810	ENSMUSG00000010392	Gosr1	AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28	golgi SNAP receptor complex member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131291905-1	chr1	131291405	131292405	+	870.0	f1_balb.idr	intron (NM_001081011, intron 22 of 22)	intron (NM_001081011, intron 22 of 22)	-12342.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0.0	0.0	1.0	2.0	2.0	1.5
Merged-chr5-140207836-2	chr5	140207336	140208336	+	870.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152617, intron 10 of 16)	intron (NR_152617, intron 10 of 16)	-32918.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180267251-2	chr1	180266751	180267751	+	870.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-10951.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80223960-2	chr17	80223460	80224460	+	870.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355458)	promoter-TSS (NM_001355458)	-491.0	NM_026053	67242.0	Mm.279985	NM_026053	ENSMUSG00000055760	Gemin6	2610019B15Rik|2810470M17Rik	gem nuclear organelle associated protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-136916358-3	chr2	136915864	136916864	+	870.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355671, intron 2 of 6)	intron (NM_001355671, intron 2 of 6)	17013.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103856097-2	chr3	103855587	103856587	+	870.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-3708.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	4.0	21.5	7.5	4.5	22.5	14.5
Merged-chr10-127568899-2	chr10	127568399	127569399	+	870.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008512, exon 36 of 89)	exon (NM_008512, exon 36 of 89)	-34340.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.0	0.0	4.5	6.0	1.0	4.0
Merged-chr4-108300481-2	chr4	108299981	108300981	+	870.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033634, intron 1 of 13)	intron (NM_001033634, intron 1 of 13)	609.0	NM_001033634	414872.0	Mm.426241	NM_001033634	ENSMUSG00000034636	Zyg11b	1110046I03Rik|2810482G21Rik|D4Mgi23|Gm431|mKIAA1730	zyg-ll family member B, cell cycle regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75455472-3	chr11	75454947	75455947	+	870.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138950)	promoter-TSS (NM_138950)	-730.0	NM_138950	192652.0	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-58791920-3	chr2	58791421	58792421	+	870.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029692)	TTS (NM_029692)	36737.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35831484-2	chr12	35830984	35831984	+	870.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94137.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	0.0	0.0	0.0	2.0	0.0	0.0
Merged-chr7-87924771-3	chr7	87924277	87925277	+	870.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081414, intron 4 of 9)	L1M2|LINE|L1	340609.0	NM_001143834	108071.0	Mm.235018	NM_001033224	ENSMUSG00000049583	Grm5	6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b	glutamate receptor, metabotropic 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135562974-1	chr5	135562474	135563474	+	870.0	f1_c57bl6.idr	intron (NM_001013412, intron 2 of 2)	MTD|LTR|ERVL-MaLR	595.0	NM_001013412	541307.0	Mm.376459	NM_001013412	ENSMUSG00000070464	Ccl26	Ccl26l	chemokine (C-C motif) ligand 26	protein-coding	2.0	10.0	1.5	7.5	14.5	9.5
Merged-chr12-4133730-6	chr12	4133397	4134397	+	870.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138305)	promoter-TSS (NM_138305)	-256.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-103942871-2	chr7	103942371	103943371	+	870.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-3697.0	NM_146354	258351.0	Mm.377448	NM_146354	ENSMUSG00000073937	Olfr633	MOR12-5	olfactory receptor 633	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130950669-2	chr2	130950169	130951169	+	870.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009730, intron 6 of 28)	intron (NM_009730, intron 6 of 28)	44174.0	NM_009730	11990.0	Mm.119936	NM_009730	ENSMUSG00000027312	Atrn	AW558010|Mgca|mg	attractin	protein-coding	1.0	0.0	0.0	4.5	0.0	3.0
Merged-chr10-79417296-4	chr10	79416791	79417791	+	869.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR3-int|LTR|ERVK	-51667.0	NM_001104537	625029.0	Mm.469865	NM_001104537	ENSMUSG00000091381	Vmn2r83	EG625029	vomeronasal 2, receptor 83	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100721405-4	chr11	100720881	100721881	+	869.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305003, intron 1 of 5)	intron (NM_001305003, intron 1 of 5)	7531.0	NM_029307	75482.0	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11350170-4	chr19	11349587	11350587	+	869.951782	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	-13941.0	NM_027836	109225.0	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92869847-4	chr16	92869355	92870355	+	869.9250490000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43781.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160047864-4	chr2	160047373	160048373	+	869.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	31220.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99212335-3	chr5	99211804	99212804	+	869.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40623.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84686217-4	chr8	84685733	84686733	+	869.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025788, intron 1 of 5)	intron (NM_025788, intron 1 of 5)	1629.0	NM_025788	66830.0	Mm.289698	NM_025788	ENSMUSG00000001910	Nacc1	2010001H03Rik|4930511N13Rik|Btbd14b|Nac1	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	protein-coding	6.0	35.0	36.5	11.0	35.0	16.0
Merged-chr15-101221822-4	chr15	101221329	101222329	+	869.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045326, exon 3 of 3)	non-coding (NR_045326, exon 3 of 3)	582.0	NR_045996	105968.0	Mm.120798	NR_045996	ENSMUSG00000115944	AU021063	-	expressed sequence AU021063	ncRNA	1.0	1.0	5.0	0.0	2.5	3.5
Merged-chr15-58416056-5	chr15	58415546	58416546	+	869.900024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145959, intron 1 of 23)	intron (NM_145959, intron 1 of 23)	578.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-27389906-4	chr16	27389392	27390392	+	869.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025615, intron 1 of 9)	intron (NM_001025615, intron 1 of 9)	936.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8667670-4	chr12	8667189	8668189	+	869.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6445.0	NM_001160221	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101160482-2	chr4	101159982	101160982	+	869.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 16 of 24)	intron (NM_146145, intron 16 of 24)	91444.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167926844-4	chr2	167926413	167927413	+	869.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5414.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35336398-3	chr2	35335946	35336946	+	869.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013515, intron 1 of 6)	intron (NM_013515, intron 1 of 6)	563.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54984310-2	chr11	54983810	54984810	+	869.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 22 of 24)	Kanga1a|DNA|TcMar-Tc2	-21370.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106483140-2	chr11	106482640	106483640	+	869.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 1 of 21)	L1MB8|LINE|L1	4656.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25054991-2	chr2	25054491	25055491	+	869.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_146251)	TTS (NM_146251)	612.0	NM_001177655	56876.0	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-52226650-2	chr1	52226150	52227150	+	869.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081081, intron 1 of 17)	intron (NM_001081081, intron 1 of 17)	6582.0	NM_001081081	14660.0	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-82808192-4	chr6	82807696	82808696	+	869.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33742.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-33039607-4	chr5	33039097	33040097	+	869.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20781.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-151973043-3	chr2	151972552	151973552	+	869.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146127, intron 1 of 1)	intron (NM_146127, intron 1 of 1)	342.0	NM_001289151	73847.0	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72217743-3	chr8	72217240	72218240	+	869.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-1990.0	NM_026455	67922.0	Mm.28327	NM_026455	ENSMUSG00000003039	Fam32a	2510049I19Rik|AW822030|OTAG-12|Otag12	family with sequence similarity 32, member A	protein-coding	1.5	1.0	3.0	1.0	6.5	9.0
Merged-chr3-52990271-3	chr3	52989783	52990783	+	869.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026225, intron 15 of 18)	intron (NM_026225, intron 15 of 18)	26940.0	NM_026225	67542.0	Mm.249548	NM_026225	ENSMUSG00000027742	Cog6	4933405E16Rik|AU018618|mKIAA1134	component of oligomeric golgi complex 6	protein-coding	9.0	1.0	1.0	3.5	0.0	1.0
Merged-chr19-24156253-3	chr19	24155745	24156745	+	869.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011597, intron 1 of 22)	intron (NM_011597, intron 1 of 22)	-13163.0	NM_001360391	21873.0	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	0.0	2.5	6.0	0.0	0.0	0.5
Merged-chr8-14846282-3	chr8	14845763	14846763	+	869.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 15 of 15)	intron (NM_172910, intron 15 of 15)	-42273.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156324876-3	chr2	156324378	156325378	+	869.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027585, intron 2 of 12)	RMER21B|LTR|ERV1	-12174.0	NM_020255	19018.0	Mm.389346	NM_020255	ENSMUSG00000046229	Scand1	2310003H23Rik|Leap1|PGC-2|Ppargc2	SCAN domain-containing 1	protein-coding	47.5	110.5	63.5	17.5	54.0	30.0
Merged-chr10-80679751-3	chr10	80679247	80680247	+	869.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3454.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-149120068-3	chr6	149119542	149120542	+	869.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18362.0	NM_177192	320560.0	Mm.426874	NM_177192	ENSMUSG00000030313	Dennd5b	9330160C06Rik|AI852444|D030011O10Rik|Gm17524	DENN/MADD domain containing 5B	protein-coding	0.0	0.0	3.5	0.0	0.0	1.0
Merged-chr11-107044503-3	chr11	107044008	107045008	+	869.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359590, intron 24 of 27)	intron (NM_001359590, intron 24 of 27)	16285.0	NM_001163473	69066.0	Mm.40679	NM_001163473	ENSMUSG00000078607	1810010H24Rik	-	RIKEN cDNA 1810010H24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-36740155-3	chr13	36739659	36740659	+	869.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-5682.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	0.0	4.0	0.0	0.0	0.0	0.0
Merged-chr4-132815226-4	chr4	132814727	132815727	+	869.8291630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19-int|LTR|ERVK	-18863.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59561945-4	chr11	59561436	59562436	+	869.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 7 of 9)	intron (NR_153314, intron 7 of 9)	9802.0	NM_001011789	257962.0	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-94949962-3	chr3	94949461	94950461	+	869.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA8|LINE|L1	-4147.0	NM_017395	53970.0	Mm.24308	NM_017395	ENSMUSG00000005774	Rfx5	-	regulatory factor X, 5 (influences HLA class II expression)	protein-coding	0.0	0.0	2.5	0.0	0.0	1.5
Merged-chr1-88286595-2	chr1	88286095	88287095	+	869.7999880000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9016.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-9237770-4	chr9	9237268	9238268	+	869.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045754, intron 2 of 3)	intron (NR_045754, intron 2 of 3)	1245.0	NM_027823	71544.0	Mm.334955	NM_027823	ENSMUSG00000050730	Arhgap42	9030420J04Rik|BE136619	Rho GTPase activating protein 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52885114-6	chr2	52884597	52885597	+	869.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	27229.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32709953-4	chr9	32709453	32710453	+	869.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038642, intron 1 of 6)	intron (NM_001038642, intron 1 of 6)	13911.0	NM_001038642	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	3.0	0.0	10.5	5.0	3.0	4.5
Merged-chr11-69428959-4	chr11	69428446	69429446	+	869.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 77 of 85)	intron (NM_001081330, intron 77 of 85)	-15271.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-143998737-16	chr1	143998100	143999100	+	869.78125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009061)	TTS (NM_009061)	5549.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145830213-4	chr2	145829698	145830698	+	869.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	44082.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-13901872-4	chr14	13901373	13902373	+	869.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59440.0	NM_001285780	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	6.0	2.5	1.5	6.0	3.5	1.5
Merged-chr11-120230382-2	chr11	120229882	120230882	+	869.75	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151480, exon 2 of 2)	non-coding (NR_151480, exon 2 of 2)	1235.0	NR_151480	102640779.0	Mm.394084	NM_175248		2900052L18Rik	-	RIKEN cDNA 2900052L18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr8-104632202-4	chr8	104631723	104632723	+	869.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019662)	promoter-TSS (NM_019662)	-902.0	NM_019662	56437.0	Mm.29467	NM_019662	ENSMUSG00000031880	Rrad	REM3|Rad	Ras-related associated with diabetes	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44527299-4	chr10	44526830	44527830	+	869.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68582.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23538931-4	chr17	23538425	23539425	+	869.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11874.0	NR_126485	320020.0	Mm.445111	NR_126484		6330415G19Rik	-	RIKEN cDNA 6330415G19 gene	ncRNA	2.5	3.0	9.0	0.0	4.0	6.5
Merged-chr2-117186268-3	chr2	117185754	117186754	+	869.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	1127.0	NR_030440	732489.0		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70615852-2	chr11	70615388	70616388	+	869.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145537)	promoter-TSS (NM_001145537)	-6.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135537951-4	chr5	135537466	135538466	+	869.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	MTEa|LTR|ERVL-MaLR	7156.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-74951513-4	chr5	74951016	74952016	+	869.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045866, intron 1 of 4)	intron (NR_045866, intron 1 of 4)	2322.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16739708-3	chr7	16739206	16740206	+	869.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198613, intron 1 of 4)	intron (NM_198613, intron 1 of 4)	1262.0	NM_198613	232910.0	Mm.333597	NM_198613	ENSMUSG00000008036	Ap2s1	AI043088	adaptor-related protein complex 2, sigma 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61919886-2	chr8	61919386	61920386	+	869.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8201.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	24.5	35.0	33.5	24.0	33.5	34.5
Merged-chr7-36697488-3	chr7	36696961	36697961	+	869.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172298)	promoter-TSS (NM_172298)	-657.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	5.5	5.0	0.0	0.0	0.0	0.0
Merged-chr17-28525049-3	chr17	28524548	28525548	+	869.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-5813.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48317299-3	chr17	48316786	48317786	+	869.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177083, intron 2 of 5)	URR1A|DNA|hAT-Charlie	1124.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-52006025-3	chr7	52005478	52006478	+	869.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160345)	promoter-TSS (NM_001160345)	40.0	NM_001160345	75744.0	Mm.386823	NM_001160345	ENSMUSG00000074093	Svip	1700006C13Rik|6620401M08Rik	small VCP/p97-interacting protein	protein-coding	0.0	1.5	0.0	0.0	1.5	0.0
Merged-chr2-167001111-4	chr2	167000612	167001612	+	869.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	-4813.0	NM_001109905	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12092321-3	chr15	12091793	12092793	+	869.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-25558.0	NM_011767	22763.0	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128780447-3	chr2	128779950	128780950	+	869.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 13 of 18)	intron (NM_008587, intron 13 of 18)	-37853.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	12.5	5.5	4.0	9.5	2.5	8.5
Merged-chr10-128548502-3	chr10	128548026	128549026	+	869.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134003)	promoter-TSS (NM_134003)	642.0	NM_018860	67945.0	Mm.290786	NM_018860	ENSMUSG00000093674	Rpl41	1810055P16Rik|2210411K19Rik	ribosomal protein L41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-75394449-3	chr4	75393947	75394947	+	869.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-116155.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148488514-2	chr5	148488014	148489014	+	869.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	63159.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53048792-2	chr4	53048292	53049292	+	869.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 37 of 49)	intron (NM_013454, intron 37 of 49)	36912.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-83540414-6	chr9	83539912	83540912	+	869.638916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7926.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	1.5	3.0	2.5	8.5	3.0	4.5
Merged-chr6-92067349-4	chr6	92066813	92067813	+	869.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172731, intron 14 of 20)	intron (NM_172731, intron 14 of 20)	-24105.0	NM_011630	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122845088-4	chr6	122844592	122845592	+	869.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021899, exon 11 of 11)	3' UTR (NM_021899, exon 11 of 11)	11065.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53410902-4	chr4	53410403	53411403	+	869.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29510.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-13122309-4	chr18	13121808	13122808	+	869.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	115318.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20509146-4	chr16	20508665	20509665	+	869.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172265, exon 16 of 16)	3' UTR (NM_172265, exon 16 of 16)	-7821.0	NM_001347176	13544.0	Mm.247259	NM_007889	ENSMUSG00000003233	Dvl3	b2b2866Clo	dishevelled segment polarity protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-64954227-4	chr18	64953729	64954729	+	869.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	66473.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	2.5	9.5	1.0	1.5	10.5	2.0
Merged-chr18-38409968-4	chr18	38409418	38410418	+	869.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8989.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145810888-3	chr2	145810373	145811373	+	869.611145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	B3|SINE|B2	24757.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121267154-3	chr5	121266608	121267608	+	869.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181421, intron 7 of 75)	B1F|SINE|Alu	46889.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-7842659-3	chr1	7842157	7843157	+	869.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	753737.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	5.0	12.0	1.0	1.0	0.5	2.0
Merged-chr13-103334558-3	chr13	103334052	103335052	+	869.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175171)	promoter-TSS (NM_175171)	-60.0	NM_175171	328329.0	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-31112422-4	chr8	31111941	31112941	+	869.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175136, intron 1 of 5)	intron (NM_175136, intron 1 of 5)	595.0	NM_175136	68867.0	Mm.29532	NM_175136	ENSMUSG00000039328	Rnf122	1110063C11Rik	ring finger protein 122	protein-coding	24.0	28.0	33.5	18.5	49.0	21.5
Merged-chr1-119648619-4	chr1	119648100	119649100	+	869.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145506, intron 1 of 24)	CpG	400.0	NM_001113416	226352.0	Mm.253156	NM_145506	ENSMUSG00000026383	Epb41l5	1700030C16Rik|AL022914|BE37|E230025E14Rik|Epb4.1l5|Lulu1|NBL5	erythrocyte membrane protein band 4.1 like 5	protein-coding	0.0	2.0	1.0	0.0	2.0	1.0
Merged-chr9-40797256-4	chr9	40796842	40797842	+	869.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTC)n|Simple_repeat|Simple_repeat	-3931.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	3.5	10.0	14.5	15.0	8.0	20.5
Merged-chr18-49980378-4	chr18	49979867	49980867	+	869.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	940.0	NM_001177759	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	10.0	1.0	8.5	6.5	19.5	7.5
Merged-chr16-15890673-4	chr16	15890181	15891181	+	869.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 18 of 18)	intron (NM_001355731, intron 18 of 18)	3395.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22695219-6	chr11	22694620	22695620	+	869.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	164615.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17507302-4	chr12	17506812	17507812	+	869.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37561.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	0.0	5.0	0.0	0.0	1.0	1.0
Merged-chr2-9878614-4	chr2	9878116	9879116	+	869.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008091)	promoter-TSS (NM_008091)	-16.0	NM_001355112	14462.0	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-25331242-4	chr18	25330742	25331742	+	869.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033532, intron 6 of 10)	Lx2|LINE|L1	162222.0	NM_001033532	225289.0	Mm.391081	NM_001033532	ENSMUSG00000033632	AW554918	4921538P22|AI461742|Kiaa1328|mKIAA1328	expressed sequence AW554918	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64506370-3	chr5	64505881	64506881	+	869.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29373.0	NR_045413	77382.0	Mm.366742	NR_045411	ENSMUSG00000105352	C030018K13Rik	-	RIKEN cDNA C030018K13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65073419-3	chr5	65072904	65073904	+	869.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-34164.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117344010-3	chr11	117343513	117344513	+	869.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113488, intron 1 of 9)	intron (NM_001113488, intron 1 of 9)	11700.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168578225-3	chr2	168577735	168578735	+	869.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291169, intron 1 of 10)	intron (NM_001291169, intron 1 of 10)	12130.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124981984-3	chr6	124981497	124982497	+	869.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-14723.0	NM_175696	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	4.0	8.5	0.0	2.5	3.5	3.5
Merged-chr1-20497752-3	chr1	20497253	20498253	+	869.544434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153179, intron 35 of 66)	(CTG)n|Simple_repeat|Simple_repeat	120304.0	NM_153179	241035.0	Mm.249253	NM_153179	ENSMUSG00000043760	Pkhd1	AI118496|AI182499|FPC|Tigm1	polycystic kidney and hepatic disease 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58074992-4	chr13	58074495	58075495	+	869.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195075, intron 5 of 16)	L1M2|LINE|L1	27433.0	NM_001195075	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	0.0	0.0	1.0	0.0	1.0	0.0
Merged-chr10-60379760-4	chr10	60379294	60380294	+	869.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 33 of 68)	intron (NM_001252635, intron 33 of 68)	-19932.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-47199262-4	chr11	47198756	47199756	+	869.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 2 of 7)	intron (NM_011891, intron 2 of 7)	180046.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	1.5	3.0	5.5	1.5	0.0	1.5
Merged-chr19-6996983-6	chr19	6996416	6997416	+	869.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026675)	promoter-TSS (NM_026675)	785.0	NR_027351	107328.0	Mm.391161	NM_153597	ENSMUSG00000047656	Trpt1	AU079016|AW045591|Tpt1|Tpt1h	tRNA phosphotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82048254-4	chr11	82047743	82048743	+	869.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013654)	TTS (NM_013654)	2531.0	NM_013654	20306.0	Mm.341574	NM_013654	ENSMUSG00000035373	Ccl7	MCP-3|Scya7|fic|marc|mcp3	chemokine (C-C motif) ligand 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-22814240-2	chr2	22813740	22814740	+	869.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	Lx8|LINE|L1	39913.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44856726-4	chr7	44856201	44857201	+	869.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021549)	promoter-TSS (NM_021549)	-445.0	NM_021549	59047.0	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32113304-2	chr12	32112804	32113804	+	869.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52025.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	1.5	0.0	0.5	1.5	0.0	0.5
Merged-chr19-4222318-2	chr19	4221818	4222818	+	869.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001310038, exon 4 of 4)	exon (NM_001310038, exon 4 of 4)	7929.0	NM_001310039	56708.0	Mm.347919	NM_019952	ENSMUSG00000040663	Clcf1	BSF-3|Bsf3|CLC|NNT-1	cardiotrophin-like cytokine factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34137661-2	chr10	34137161	34138161	+	869.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9689.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38659430-2	chr15	38658930	38659930	+	869.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-2474.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146797298-2	chr5	146796811	146797811	+	869.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-2355.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	7.5	28.0	15.0	2.0	1.5	9.5
Merged-chr13-59818003-3	chr13	59817493	59818493	+	869.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153538, intron 2 of 27)	intron (NM_153538, intron 2 of 27)	5154.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0.0	3.0	2.5	4.0	0.0	1.5
Merged-chr11-44365808-2	chr11	44365308	44366308	+	869.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-34255.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr1-134081773-2	chr1	134081273	134082273	+	869.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-2618.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124496554-2	chr6	124496054	124497054	+	869.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181344, intron 2 of 5)	MLT1A0|LTR|ERVL-MaLR	3441.0	NM_181344	232371.0	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53761322-2	chr11	53760822	53761822	+	869.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2332.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82991761-2	chr11	82991261	82992261	+	869.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172796)	promoter-TSS (NM_172796)	69.0	NM_172796	237886.0	Mm.270253	NM_172796	ENSMUSG00000069793	Slfn9	9830137M10Rik	schlafen 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-99184582-2	chr8	99184082	99185082	+	869.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039154, intron 7 of 12)	intron (NM_001039154, intron 7 of 12)	172695.0	NR_110579	100873092.0	Mm.414599	NR_110579	ENSMUSG00000089819	Gm15679	-	predicted gene 15679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-30224755-1	chr11	30224255	30225255	+	869.5	f0_balb.idr	Intergenic	B3A|SINE|B2	-4983.0	NM_175836	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	7.0	2.5	4.5	11.0	2.0	4.5
Merged-chr3-16198317-2	chr3	16197817	16198817	+	869.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358042, intron 2 of 3)	RMER17A2|LTR|ERVK	15152.0	NM_172677	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	0.0	0.0	1.5	0.0	2.0	1.0
Merged-chr3-19229554-2	chr3	19229054	19230054	+	869.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122759, intron 12 of 12)	intron (NM_001122759, intron 12 of 12)	35454.0	NM_008802	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-117932768-2	chr6	117932268	117933268	+	869.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001173372)	TTS (NM_001173372)	4567.0	NM_001173372	108017.0	Mm.250392	NM_033648	ENSMUSG00000004988	Fxyd4	0610008I02Rik|AI267073|Chif	FXYD domain-containing ion transport regulator 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81921806-4	chr7	81921347	81922347	+	869.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013886, intron 1 of 5)	intron (NM_013886, intron 1 of 5)	12612.0	NM_013886	29877.0	Mm.392934	NM_013886	ENSMUSG00000025104	Hdgfl3	2700022B06Rik|HRP-3|Hdgfrp3	HDGF like 3	protein-coding	0.0	6.0	0.0	0.0	1.0	2.5
Merged-chr10-81382390-2	chr10	81381890	81382890	+	869.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-2038.0	NM_133964	102115.0	Mm.294975	NM_133964	ENSMUSG00000078440	Dohh	1110033C18Rik|AI585913|AL022869|Hlrc1	deoxyhypusine hydroxylase/monooxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165918241-2	chr2	165917741	165918741	+	869.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-33403.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68127343-4	chr10	68126841	68127841	+	869.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 6 of 9)	intron (NM_023598, intron 6 of 9)	147771.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	23.5	47.5	24.0	30.0	47.5	21.0
Merged-chr4-129380039-2	chr4	129379539	129380539	+	869.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2011.0	NM_028603	73680.0	Mm.32997	NM_028603	ENSMUSG00000028807	Zbtb8a	2410081M15Rik|AI480941	zinc finger and BTB domain containing 8a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128143168-2	chr6	128142668	128143668	+	869.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175414, intron 1 of 8)	intron (NM_175414, intron 1 of 8)	410.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	1.5	2.5	2.0	0.0	1.5	1.5
Merged-chr15-12324236-2	chr15	12323736	12324736	+	869.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025673, intron 1 of 3)	ID_B1|SINE|B4	2740.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145275972-2	chr6	145275467	145276467	+	869.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25415.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	86.5	285.0	191.0	155.0	237.0	196.0
Merged-chr13-95797756-2	chr13	95797262	95798262	+	869.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 2 of 35)	intron (NM_027711, intron 2 of 35)	94160.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	13.5	24.5	6.0	0.0	0.0	1.0
Merged-chr13-51333117-2	chr13	51332617	51333617	+	869.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCTG)n|Simple_repeat|Simple_repeat	-75501.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161897843-2	chr1	161897345	161898345	+	869.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-21163.0	NM_001357402	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	29.5	51.5	49.0	33.5	26.5	30.0
Merged-chr18-60711553-2	chr18	60711053	60712053	+	869.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348100, intron 2 of 14)	intron (NM_001348100, intron 2 of 14)	16013.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-85339504-2	chr6	85339004	85340004	+	869.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177466, intron 3 of 4)	intron (NM_177466, intron 3 of 4)	-3131.0	NR_030486	735267.0		NR_030486	ENSMUSG00000076012	Mir705	Mirn705|mmu-mir-705	microRNA 705	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-58532402-4	chr2	58531928	58532928	+	869.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110204, intron 2 of 12)	intron (NM_001110204, intron 2 of 12)	28982.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124577658-3	chr2	124577162	124578162	+	869.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-32634.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112746917-3	chr12	112746423	112747423	+	869.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001024602)	TTS (NM_001024602)	13601.0	NR_105905	102466989.0		NR_105905	ENSMUSG00000099165	Mir6940	Gm27655|mmu-mir-6940	microRNA 6940	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-100937622-4	chr14	100937107	100938107	+	869.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	262462.0	NM_029680	76627.0	Mm.31415	NM_029680	ENSMUSG00000042888	Prr30	1700110M21Rik	proline rich 30	protein-coding	3.0	11.0	5.0	7.0	7.0	0.5
Merged-chr17-21474875-4	chr17	21474379	21475379	+	869.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	-14109.0	NM_013843	24132.0	Mm.42140	NM_013843	ENSMUSG00000057409	Zfp53	D030067O06Rik|KRAZ1|Zfp-53|Zfp118|zfas8	zinc finger protein 53	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46659087-2	chr19	46658587	46659587	+	869.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13913.0	NM_007809	13074.0	Mm.1262	NM_007809	ENSMUSG00000003555	Cyp17a1	Cyp17|p450c17	cytochrome P450, family 17, subfamily a, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80126413-2	chr12	80125913	80126913	+	869.416626	f1_balb.idr|f1_c57bl6.idr	intron (NR_033514, intron 2 of 2)	intron (NR_033514, intron 2 of 2)	6431.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153413554-4	chr1	153413041	153414041	+	869.408325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033736, intron 1 of 3)	intron (NR_033736, intron 1 of 3)	692.0	NR_033736	626058.0	Mm.31556	NM_001177359		E330020D12Rik	EG626058|F430003O07Rik|Gm6648	Riken cDNA E330020D12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62249116-3	chr11	62248611	62249611	+	869.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007413, exon 1 of 2)	exon (NM_007413, exon 1 of 2)	127.0	NM_007413	11541.0	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20253484-3	chr14	20252988	20253988	+	869.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15674.0	NM_029006	74571.0	Mm.105571	NM_029006	ENSMUSG00000023387	Kcnk16	4731413G05Rik|TALK-1|TALK1	potassium channel, subfamily K, member 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46535360-4	chr4	46534897	46535897	+	869.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151695)	promoter-TSS (NR_151695)	-504.0	NR_151695	105247126.0	Mm.477962	NR_151695		Gm16731	-	predicted gene, 16731	ncRNA	10.0	19.5	36.0	22.5	34.0	34.5
Merged-chr5-23121459-3	chr5	23120968	23121968	+	869.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029990, intron 2 of 2)	Charlie5|DNA|hAT-Charlie	312885.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	9.5	4.0	5.0	16.0	25.0	4.0
Merged-chr10-18927567-4	chr10	18927067	18928067	+	869.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie2b|DNA|hAT-Charlie	82496.0	NM_022032	64058.0	Mm.28209	NM_022032	ENSMUSG00000019851	Perp	1110017A08Rik|KCP1|KRTCAP1|PIGPC1|THW	PERP, TP53 apoptosis effector	protein-coding	2.0	9.5	2.5	28.5	9.5	3.0
Merged-chr14-61331420-4	chr14	61330900	61331900	+	869.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21647.0	NM_177337	219144.0	Mm.206566	NM_177337	ENSMUSG00000043157	Arl11	ARLTS1|C730007L20Rik	ADP-ribosylation factor-like 11	protein-coding	0.0	3.5	0.5	0.0	0.0	1.0
Merged-chr4-53026172-2	chr4	53025672	53026672	+	869.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1-int|LTR|ERVL-MaLR	14292.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28369964-2	chr7	28369464	28370464	+	869.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_138752, intron 4 of 18)	intron (NM_138752, intron 4 of 18)	2698.0	NM_138752	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-77781519-4	chr12	77781026	77782026	+	869.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	371385.0	NM_001252616	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-116478107-2	chr8	116477607	116478607	+	869.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26908.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-116077667-4	chr12	116077164	116078164	+	869.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009511)	promoter-TSS (NM_009511)	-62.0	NM_009511	22355.0	Mm.395245	NM_009511	ENSMUSG00000011171	Vipr2	VPAC2|VPAC2R|Vip2	vasoactive intestinal peptide receptor 2	protein-coding	7.0	1.0	1.5	6.5	0.5	2.0
Merged-chr8-128302541-3	chr8	128302045	128303045	+	869.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-24320.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0.0	0.0	4.0	0.0	0.0	0.0
Merged-chr19-21276627-3	chr19	21276171	21277171	+	869.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009551, intron 2 of 5)	intron (NM_009551, intron 2 of 5)	4393.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	10.0	2.5	7.5	12.0	3.0	11.5
Merged-chr15-59264109-3	chr15	59263589	59264589	+	869.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42859.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	4.0	7.5	3.0	3.0	7.0	2.0
Merged-chr2-153443951-4	chr2	153443454	153444454	+	869.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134300, intron 4 of 10)	CpG	525.0	NM_001001986	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-84019304-4	chr6	84018826	84019826	+	869.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021469)	promoter-TSS (NM_021469)	-60.0	NM_001310152	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.0	6.0	0.0	1.0	0.0	8.0
Merged-chr11-121234107-3	chr11	121233627	121234627	+	869.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3109.0	NM_026272	67608.0	Mm.291832	NM_026272	ENSMUSG00000000056	Narf	4430402O11Rik	nuclear prelamin A recognition factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12144906-3	chr18	12144425	12145425	+	869.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024182, intron 7 of 12)	intron (NM_024182, intron 7 of 12)	16075.0	NM_024182	66878.0	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	4.0	4.5	10.5	4.5	2.5	10.5
Merged-chr17-83708002-3	chr17	83707517	83708517	+	869.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 1 of 16)	B1F1|SINE|Alu	1854.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-117127572-3	chr13	117127070	117128070	+	869.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2455.0	NR_046023	623312.0	Mm.131279	NR_046023	ENSMUSG00000114792	Gm6416	-	predicted gene 6416	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100555752-4	chr11	100555270	100556270	+	869.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028918, intron 7 of 11)	ORR1E|LTR|ERVL-MaLR	10138.0	NM_028918	74407.0	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64195469-3	chr1	64194944	64195944	+	869.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74055.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6279441-3	chr19	6278912	6279912	+	869.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 1 of 4)	intron (NM_010119, intron 1 of 4)	2516.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23914705-4	chr18	23914198	23915198	+	869.3249509999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	-39990.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-73839793-4	chr18	73839285	73840285	+	869.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19600.0	NM_027741	71263.0	Mm.126220	NM_027741	ENSMUSG00000064036	Mro	4930507C04Rik|4933435E20Rik	maestro	protein-coding	0.5	28.5	12.5	1.5	4.5	2.5
Merged-chr1-134098378-5	chr1	134097905	134098905	+	869.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12837.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-48816968-4	chr9	48816490	48817490	+	869.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033324, intron 2 of 6)	MIR3|SINE|MIR	18955.0	NM_001033324	235320.0	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding	18.0	33.5	29.5	11.5	21.0	35.0
Merged-chr2-5033869-5	chr2	5033449	5034449	+	869.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356487, intron 9 of 13)	intron (NM_001356487, intron 9 of 13)	-21158.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117264734-4	chr8	117264230	117265230	+	869.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	7711.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95837370-3	chr11	95836857	95837857	+	869.285706	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163464, intron 1 of 7)	intron (NM_001163464, intron 1 of 7)	-4938.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90070019-4	chr7	90069538	90070538	+	869.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40879.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	4.5	12.0	6.5	3.5	6.5	11.0
Merged-chr12-31984819-4	chr12	31984322	31985322	+	869.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011158, intron 4 of 10)	Lx8|LINE|L1	-34577.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	12.5	8.5	2.5	5.0	10.5	2.0
Merged-chr4-128806178-4	chr4	128805696	128806696	+	869.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081098)	promoter-TSS (NM_001081098)	-84.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	10.5	24.0	19.5	5.0	20.0	20.0
Merged-chr10-42679880-4	chr10	42679385	42680385	+	869.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172416, intron 1 of 5)	intron (NM_172416, intron 1 of 5)	969.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-10872603-4	chr15	10872105	10873105	+	869.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTTA)n|Simple_repeat|Simple_repeat	43554.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58857097-4	chr1	58856630	58857630	+	869.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54628.0	NM_001277926	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	0.0	0.0	0.0	0.0	3.0	2.5
Merged-chr1-178330752-4	chr1	178330190	178331190	+	869.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016805, exon 11 of 14)	exon (NM_016805, exon 11 of 14)	7125.0	NM_016805	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116388255-2	chr11	116387755	116388755	+	869.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_027258, intron 2 of 18)	B1_Mur3|SINE|Alu	24777.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100312590-2	chr15	100312090	100313090	+	869.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_027334, intron 1 of 1)	intron (NM_027334, intron 1 of 1)	7773.0	NM_027334	70152.0	Mm.488086	NM_027334	ENSMUSG00000054619	Mettl7a1	2210414H16Rik|3300001H21Rik|Aam-B|Mettl7a|UbiE1	methyltransferase like 7A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-70509389-2	chr2	70508880	70509880	+	869.25	f0_balb.idr|f1_balb.idr	exon (NM_025744, exon 1 of 13)	exon (NM_025744, exon 1 of 13)	561.0	NM_025744	66748.0	Mm.423014	NM_025744	ENSMUSG00000075302	Erich2	4933404M02Rik	glutamate rich 2	protein-coding	0.0	0.0	3.0	1.5	3.5	0.0
Merged-chr7-142437376-2	chr7	142436906	142437906	+	869.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285861, intron 1 of 8)	intron (NM_001285861, intron 1 of 8)	572.0	NM_001285861	55925.0	Mm.213002	NM_018802	ENSMUSG00000031098	Syt8	-	synaptotagmin VIII	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr17-87281548-4	chr17	87281004	87282004	+	869.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015506, intron 1 of 4)	intron (NR_015506, intron 1 of 4)	1310.0	NR_015506	74597.0	Mm.63783	NR_015506	ENSMUSG00000085287	4833418N02Rik	-	RIKEN cDNA 4833418N02 gene	ncRNA	68.0	205.5	105.0	97.0	196.5	129.0
Merged-chr11-78038353-2	chr11	78037853	78038853	+	869.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_183286)	TTS (NM_183286)	412.0	NM_008028	14252.0	Mm.130227	NM_008028	ENSMUSG00000061981	Flot2	AI573412|Esa|reggie-2	flotillin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-66221409-4	chr17	66220908	66221908	+	869.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	97888.0	NM_001348292	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-7887147-3	chr17	7886586	7887586	+	869.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38914.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-8679385-3	chr13	8678888	8679888	+	869.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110345, intron 4 of 10)	intron (NR_110345, intron 4 of 10)	191656.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103567120-4	chr2	103566619	103567619	+	869.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178890, exon 1 of 17)	exon (NM_178890, exon 1 of 17)	809.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr7-73628278-4	chr7	73627769	73628769	+	869.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	58294.0	NR_033604	244061.0	Mm.484605	NR_033604	ENSMUSG00000108337	Gm4971	EG244061	Smad nuclear interacting protein 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134617355-3	chr5	134616864	134617864	+	869.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2339.0	NM_020044	56743.0	Mm.391375	NM_020044	ENSMUSG00000040751	Lat2	AW125574|LAB|NTAL|WSCR5|Wbscr15|Wbscr5	linker for activation of T cells family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-145670942-4	chr3	145670439	145671439	+	869.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-20954.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5511338-3	chr19	5510818	5511818	+	869.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024560)	promoter-TSS (NM_001024560)	-801.0	NM_001024560	225861.0	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-78635489-3	chr16	78634981	78635981	+	869.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58793.0	NM_025967	67102.0	Mm.37332	NM_025967	ENSMUSG00000022864	D16Ertd472e	1700010I10Rik|2310009O17Rik|E330003K22Rik|Eurl	DNA segment, Chr 16, ERATO Doi 472, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108068048-3	chr9	108067561	108068561	+	869.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311152, intron 15 of 38)	intron (NM_001311152, intron 15 of 38)	11240.0	NM_001311152	84585.0	Mm.379272	NM_032543	ENSMUSG00000041528	Rnf123	BC003945|Kpc1	ring finger protein 123	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97829561-2	chr11	97829061	97830061	+	869.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010688, intron 4 of 6)	intron (NM_010688, intron 4 of 6)	-11219.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	3.0	22.0	7.5	1.5	5.5	4.0
Merged-chr13-58388096-4	chr13	58387574	58388574	+	869.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2849.0	NM_027335	70153.0	Mm.296610	NM_027335	ENSMUSG00000021550	2210016F16Rik	-	RIKEN cDNA 2210016F16 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32952789-7	chr12	32952365	32953365	+	869.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_044986, intron 2 of 5)	intron (NR_044986, intron 2 of 5)	924.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69417835-3	chr12	69417373	69418373	+	869.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45723.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	0.5	7.0	0.0	2.0	2.5	2.0
Merged-chr17-45566389-3	chr17	45565965	45566965	+	869.125	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001357105, exon 4 of 4)	exon (NM_001357105, exon 4 of 4)	2529.0	NM_001357105	73836.0	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43031498-3	chr5	43030999	43031999	+	869.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-201964.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121651912-3	chr3	121651398	121652398	+	869.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5445.0	NR_036458	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105331766-3	chr8	105331271	105332271	+	869.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177699, exon 15 of 22)	exon (NM_177699, exon 15 of 22)	5407.0	NM_025486	66320.0	Mm.29990	NM_025486	ENSMUSG00000014856	Tmem208	1700006C06Rik|2610030K20Rik|Hspc171	transmembrane protein 208	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145289187-4	chr6	145288696	145289696	+	869.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38644.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	5.0	8.0	2.0	1.5	3.0	3.5
Merged-chr17-79355715-4	chr17	79355160	79356160	+	869.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026514)	promoter-TSS (NM_026514)	-569.0	NM_026514	260409.0	Mm.140601	NM_026514	ENSMUSG00000036533	Cdc42ep3	3200001F04Rik|AA986861|Borg2|Cep3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding	1.5	5.5	3.0	4.5	1.0	0.0
Merged-chr7-104369226-3	chr7	104368739	104369739	+	869.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-10593.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	11.5	41.5	15.5	14.5	32.5	20.5
Merged-chr4-134946170-3	chr4	134945669	134946669	+	869.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	15189.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96384235-3	chr9	96383735	96384735	+	869.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-19804.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0.0	2.0	1.0	6.0	3.5	18.0
Merged-chr1-151706254-4	chr1	151705734	151706734	+	869.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 11 of 13)	intron (NM_022018, intron 11 of 13)	48493.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78028253-4	chr10	78027718	78028718	+	869.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14069.0	NM_001081695	54427.0	Mm.13433	NM_019448	ENSMUSG00000000730	Dnmt3l	D6Ertd14e|ecat7	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107551612-4	chr9	107551127	107552127	+	869.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243748)	promoter-TSS (NM_001243748)	72.0	NM_001243748	56289.0	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	0.0	0.0	1.0	0.0	0.0	2.0
Merged-chr8-84416015-8	chr8	84415507	84416507	+	869.0416869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252060, intron 1 of 47)	(TCC)n|Simple_repeat|Simple_repeat	643.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	0.0	1.0	1.0	23.0	64.0	48.0
Merged-chr5-118267015-2	chr5	118266513	118267513	+	869.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	21786.0	NM_001081236	76792.0	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr11-87583829-2	chr11	87583329	87584329	+	869.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361936, intron 2 of 11)	intron (NM_001361936, intron 2 of 11)	2768.0	NM_001284392	18952.0	Mm.2214	NM_011129	ENSMUSG00000020486	Sept4	ARTS|Bh5|Pnutl2	septin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-60215968-2	chr12	60215468	60216468	+	869.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-996485.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-10229991-2	chr14	10229491	10230491	+	869.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 5 of 9)	intron (NM_001360141, intron 5 of 9)	223467.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141278332-2	chr4	141277832	141278832	+	869.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151527)	promoter-TSS (NR_151527)	-107.0	NR_151527	100503810.0		NR_151527	ENSMUSG00000085395	Gm13056	-	predicted gene 13056	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59234767-2	chr2	59234267	59235267	+	869.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	73917.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32209122-3	chr12	32208630	32209630	+	869.0	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_001146201)	promoter-TSS (NM_001146201)	-481.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	97.0	133.5	94.5	62.5	80.0	46.0
Merged-chr5-135133327-2	chr5	135132827	135133827	+	869.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152880, exon 11 of 17)	non-coding (NR_152880, exon 11 of 17)	-16384.0	NM_013763	27368.0	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-22430307-1	chr15	22429807	22430807	+	869.0	f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	284677.0	NM_001165971	545091.0	Mm.475598	NM_001165971		Hnrnpa1l2-ps2	EG545091|Gm5803	heterogeneous nuclear ribonucleoprotein A1-like 2, pseudogene 2	protein-coding	0.0	2.0	0.0	0.0	0.0	0.0
Merged-chr11-95009697-3	chr11	95009213	95010213	+	869.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146025)	promoter-TSS (NM_146025)	-166.0	NM_146025	217125.0	Mm.297199	NM_146025	ENSMUSG00000047181	Samd14	AI839049|AI854782|BC034054	sterile alpha motif domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr1-191852733-1	chr1	191852233	191853233	+	869.0	f1_c57bl6.idr	Intergenic	RLTR26B_MM|LTR|ERVK	31260.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	1.0	8.5	7.0	0.5	8.0	11.0
Merged-chr7-127848727-2	chr7	127848181	127849181	+	869.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009294, intron 10 of 10)	intron (NM_009294, intron 10 of 10)	6873.0	NM_009294	20909.0	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75455507-2	chr18	75455007	75456007	+	869.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 10 of 11)	intron (NM_201354, intron 10 of 11)	-59138.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	0.0	0.0	0.5	4.5	0.0	2.5
Merged-chr3-140453410-2	chr3	140452910	140453910	+	869.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	425161.0	NR_105798	102465198.0		NR_105798	ENSMUSG00000099169	Mir7j	Gm27716|Mirlet7j|mmu-let-7j	microRNA 7j	ncRNA	0.0	2.0	0.0	0.0	0.0	0.0
Merged-chr16-50841899-4	chr16	50841401	50842401	+	869.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58492.0	NR_131005	78639.0	Mm.160109	NR_131005	ENSMUSG00000092276	1700116B05Rik	-	RIKEN cDNA 1700116B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88418132-1	chr15	88417632	88418632	+	869.0	f1_balb.idr	Intergenic	Intergenic	103258.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	1.0	7.0	1.0	0.0	6.5	7.0
Merged-chr10-85928607-4	chr10	85928105	85929105	+	869.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163614, exon 1 of 1)	exon (NM_001163614, exon 1 of 1)	114.0	NM_001163614	67341.0	Mm.382315	NM_001163614	ENSMUSG00000085111	Ascl4	1700054F16Rik|bHLHa44	achaete-scute family bHLH transcription factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-98056749-3	chr4	98056236	98057236	+	869.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 7 of 10)	URR1A|DNA|hAT-Charlie	279110.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-74990408-3	chr7	74989909	74990909	+	869.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39802.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131208486-2	chr2	131207986	131208986	+	869.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1874.0	NM_001291032	69596.0	Mm.2937	NM_027129	ENSMUSG00000068264	Ap5s1	0610038L13Rik|2310035K24Rik|AW060727|sigma5	adaptor-related protein 5 complex, sigma 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154713243-1	chr2	154712743	154713743	+	869.0	f1_c57bl6.idr	Intergenic	(TCCC)n|Simple_repeat|Simple_repeat	56217.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	1.0	1.0	1.0	3.5	2.0	0.5
Merged-chr12-56344927-2	chr12	56344427	56345427	+	869.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145442, intron 1 of 8)	intron (NM_145442, intron 1 of 8)	967.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-39003342-2	chr2	39002842	39003842	+	869.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025592, intron 3 of 3)	intron (NM_025592, intron 3 of 3)	1789.0	NM_025592	66489.0	Mm.345333	NM_025592	ENSMUSG00000062997	Rpl35	2410039E09Rik	ribosomal protein L35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75456293-3	chr7	75455764	75456764	+	869.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 1 of 36)	CpG	730.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	2.5	10.5	13.0	1.5	7.5	10.0
Merged-chr7-78757264-1	chr7	78756764	78757764	+	869.0	f1_c57bl6.idr	Intergenic	Intergenic	25825.0	NM_023331	67308.0	Mm.193181	NM_023331	ENSMUSG00000030612	Mrpl46	3110052F15Rik|C15orf4|C80107|LIECG2|P2ECSL	mitochondrial ribosomal protein L46	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr17-42911768-3	chr17	42911282	42912282	+	869.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35358.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166908236-2	chr2	166907736	166908736	+	869.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023565, intron 1 of 24)	B2_Mm1t|SINE|B2	2140.0	NM_023565	110750.0	Mm.22417	NM_023565	ENSMUSG00000002718	Cse1l	2610100P18Rik|AA407533|Capts|Cas|Xpo2	chromosome segregation 1-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131021685-4	chr1	131021188	131022188	+	869.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010548, intron 3 of 4)	intron (NM_010548, intron 3 of 4)	1843.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	0.5	2.0	3.0	0.0	6.5	5.5
Merged-chr17-29963751-2	chr17	29963249	29964249	+	869.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41290.0	NM_148926	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	2.0	0.0	10.5	2.0	0.0	1.0
Merged-chr16-17881047-3	chr16	17880539	17881539	+	869.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109750, intron 1 of 9)	B4A|SINE|B4	10689.0	NM_010048	13356.0	Mm.254515	NM_010048	ENSMUSG00000003166	Dgcr2	9930034O06Rik|DGS-C|Dgsc|Idd|Lan|Sez12|mKIAA0163	DiGeorge syndrome critical region gene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-115090679-3	chr13	115090175	115091175	+	869.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134058)	promoter-TSS (NM_134058)	-517.0	NM_134058	105083.0	Mm.486295	NM_134058	ENSMUSG00000042275	Pelo	AA409897|AI852218	pelota mRNA surveillance and ribosome rescue factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-122295654-2	chr9	122295154	122296154	+	869.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1231.0	NM_133979	102566.0	Mm.87676	NM_133979	ENSMUSG00000037949	Ano10	AI604832|Tmem16k	anoctamin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76227433-3	chr16	76226921	76227921	+	869.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	104808.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-4583258-1	chr5	4582758	4583758	+	869.0	f0_balb.idr	Intergenic	Intergenic	174958.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43906696-2	chr4	43906196	43907196	+	869.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016678, intron 6 of 20)	intron (NM_016678, intron 6 of 20)	31166.0	NM_016678	53614.0	Mm.331573	NM_016678	ENSMUSG00000028476	Reck	St15|mRECK	reversion-inducing-cysteine-rich protein with kazal motifs	protein-coding	1.0	0.5	0.0	15.5	4.0	3.5
Merged-chr4-38828-1	chr4	38328	39328	+	869.0	f1_c57bl6.idr	Intergenic	Intergenic	-3133255.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171661883-4	chr1	171661303	171662303	+	868.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8766.0	NM_144539	75345.0	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	9.0	15.0	14.0	8.5	20.0	18.5
Merged-chr7-29303926-4	chr7	29303421	29304421	+	868.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013874)	promoter-TSS (NM_013874)	-84.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127557898-4	chr7	127557390	127558390	+	868.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304266, intron 33 of 33)	intron (NM_001304266, intron 33 of 33)	-3333.0	NM_001304267	105180375.0	Mm.428042	NM_001304267	ENSMUSG00000106715	Tmem265	-	transmembrane protein 265	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24938862-3	chr13	24938350	24939350	+	868.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_102323, exon 2 of 2)	non-coding (NR_102323, exon 2 of 2)	-1189.0	NM_172532	214579.0	Mm.393311	NM_172532	ENSMUSG00000035936	Aldh5a1	6330403E24Rik|Ahd-1|Ahd1|D630032B01Rik|SSADH|Ssdh1	aldhehyde dehydrogenase family 5, subfamily A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102360749-3	chr2	102360250	102361250	+	868.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020267, intron 2 of 4)	intron (NM_020267, intron 2 of 4)	40150.0	NM_020267	80985.0	Mm.315002	NM_020267	ENSMUSG00000027189	Trim44	Dipb|Mc7	tripartite motif-containing 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124643669-3	chr2	124643189	124644189	+	868.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	-9892.0	NM_199240	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71598771-7	chr2	71598210	71599210	+	868.9442140000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-51956.0	NM_010054	13392.0	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding	29.5	52.0	12.0	12.5	4.5	0.5
Merged-chr13-114954697-4	chr13	114954208	114955208	+	868.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22608.0	NM_008396	16398.0	Mm.5007	NM_008396	ENSMUSG00000015533	Itga2	CD49B|DX5|GPIa	integrin alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167230747-4	chr2	167230237	167231237	+	868.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008968, intron 1 of 9)	intron (NM_008968, intron 1 of 9)	9800.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45474914-4	chr17	45474420	45475420	+	868.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027649)	promoter-TSS (NM_027649)	18.0	NM_027649	71020.0	Mm.44257	NM_027649	ENSMUSG00000023935	Spats1	1700011H05Rik|4933400B06Rik|Ddip|Srsp1	spermatogenesis associated, serine-rich 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78369118-4	chr15	78368630	78369630	+	868.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19639.0	NM_001163613	73376.0	Mm.73222	NM_028522	ENSMUSG00000062154	Tex33	1700061J05Rik|Ean57	testis expressed 33	protein-coding	1.5	0.0	0.0	1.0	0.0	0.0
Merged-chr11-78343522-4	chr11	78343001	78344001	+	868.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011676)	promoter-TSS (NM_011676)	6.0	NM_011676	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181305088-4	chr2	181304581	181305581	+	868.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9419.0	NM_009133	20262.0	Mm.2319	NM_009133	ENSMUSG00000027581	Stmn3	9330161A03Rik|AI604839|R75323|Sclip	stathmin-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-85693349-4	chr9	85692882	85693882	+	868.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175371, intron 25 of 27)	intron (NM_175371, intron 25 of 27)	55952.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101274611-2	chr15	101274111	101275111	+	868.916626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010444, exon 7 of 7)	3' UTR (NM_010444, exon 7 of 7)	7765.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45275509-4	chr9	45274955	45275955	+	868.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_B2|LTR|ERVK	-6306.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	3.5	14.0	9.5	7.0	11.5	9.0
Merged-chr1-52499239-2	chr1	52498739	52499739	+	868.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_008667, intron 1 of 7)	intron (NM_008667, intron 1 of 7)	1209.0	NM_008667	17936.0	Mm.25903	NM_008667	ENSMUSG00000002881	Nab1	-	Ngfi-A binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119053426-4	chr11	119052919	119053919	+	868.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12506.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15467848-3	chr17	15467350	15468350	+	868.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30426.0	NM_011185	19170.0	Mm.32912	NM_011185	ENSMUSG00000014769	Psmb1	AA409053|C81484|Lmpc5	proteasome (prosome, macropain) subunit, beta type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127194697-3	chr10	127194227	127195227	+	868.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045715)	promoter-TSS (NR_045715)	-522.0	NR_045715	100038591.0	Mm.441071	NR_045715	ENSMUSG00000097331	F420014N23Rik	-	RIKEN cDNA F420014N23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-105869469-3	chr12	105868969	105869969	+	868.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	84772.0	NM_001347440	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	0.0	1.5	6.0	0.5	5.0	6.5
Merged-chr7-88998095-4	chr7	88997593	88998593	+	868.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	340694.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.0	0.0	1.0	2.0	3.5	9.0
Merged-chr13-114376718-4	chr13	114376224	114377224	+	868.8583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010887, intron 1 of 4)	L1MD2|LINE|L1	11370.0	NM_010887	17993.0	Mm.253142	NM_010887	ENSMUSG00000021764	Ndufs4	6720411N02Rik|C1-18k	NADH dehydrogenase (ubiquinone) Fe-S protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-30211000-4	chr6	30210503	30211503	+	868.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001169577)	TTS (NM_001169577)	32800.0	NM_001169577	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4151410-3	chr7	4150919	4151919	+	868.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021454, exon 3 of 3)	exon (NM_021454, exon 3 of 3)	-1547.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55458818-3	chr11	55458339	55459339	+	868.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 1 of 3)	intron (NM_009720, intron 1 of 3)	2369.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114960511-3	chr11	114960012	114961012	+	868.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199225)	promoter-TSS (NM_199225)	-95.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	7.5	8.0	4.0	13.0	10.0	13.0
Merged-chr4-19893987-4	chr4	19893486	19894486	+	868.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175406, intron 2 of 7)	intron (NM_175406, intron 2 of 7)	28580.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-72437621-3	chr4	72437141	72438141	+	868.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	236397.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-59764707-6	chr1	59764202	59765202	+	868.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007561, exon 1 of 13)	exon (NM_007561, exon 1 of 13)	423.0	NM_007561	12168.0	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136028274-3	chr4	136027678	136028678	+	868.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6529.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	63.5	70.5	42.5	26.0	97.5	39.5
Merged-chr4-105265248-4	chr4	105264754	105265754	+	868.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	107907.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3309417-3	chr5	3308930	3309930	+	868.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34463.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-101662097-4	chr14	101661599	101662599	+	868.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016723, intron 2 of 8)	CT-rich|Low_complexity|Low_complexity	8132.0	NM_016723	50933.0	Mm.275970	NM_016723	ENSMUSG00000022111	Uchl3	-	ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128805396-3	chr2	128804856	128805856	+	868.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-12947.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	4.5	11.0	9.0	5.5	8.5	5.5
Merged-chr6-56756360-4	chr6	56755828	56756828	+	868.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030235, intron 15 of 15)	intron (NM_030235, intron 15 of 15)	40885.0	NM_001362211	210973.0	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73395004-3	chr17	73394505	73395505	+	868.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033444, intron 1 of 22)	intron (NM_001033444, intron 1 of 22)	4291.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5928792-3	chr19	5928254	5929254	+	868.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3938.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32280709-4	chr17	32280202	32281202	+	868.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286630, intron 1 of 19)	intron (NM_001286630, intron 1 of 19)	3421.0	NM_198094	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5657711-2	chr17	5657211	5658211	+	868.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 2 of 8)	intron (NM_146073, intron 2 of 8)	-140946.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94370819-6	chr8	94370219	94371219	+	868.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15710.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54566060-2	chr13	54565560	54566560	+	868.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252648)	promoter-TSS (NM_001252648)	-678.0	NM_133797	97820.0	Mm.24593	NM_133797	ENSMUSG00000025871	4833439L19Rik	4930558H15Rik|C81457|Kiaa1191|P33monox	RIKEN cDNA 4833439L19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-142525029-4	chr6	142524523	142525523	+	868.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17066.0	NM_001316322	16832.0	Mm.9745	NM_008492	ENSMUSG00000030246	Ldhb	AI790582|H-Ldh|LDH-B|LDH-H|Ldh-2|Ldh2	lactate dehydrogenase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164928573-2	chr2	164928072	164929072	+	868.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-16822.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	3.5	0.0	6.5	2.5	10.0	2.0
Merged-chr4-86428336-4	chr4	86427873	86428873	+	868.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029967)	TTS (NM_029967)	129930.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17385655-4	chr6	17385154	17386154	+	868.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamRep605|LTR?|LTR?	78014.0	NM_001243064	12389.0	Mm.28278	NM_007616	ENSMUSG00000007655	Cav1	Cav|Cav-1	caveolin 1, caveolae protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137826587-4	chr5	137826083	137827083	+	868.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153510, intron 4 of 6)	intron (NM_153510, intron 4 of 6)	9695.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21030328-4	chr9	21029818	21030818	+	868.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023892, intron 2 of 2)	intron (NM_023892, intron 2 of 2)	945.0	NM_023892	78369.0	Mm.30220	NM_023892	ENSMUSG00000001014	Icam4	1810015M19Rik|Cd242|ICAM-4	intercellular adhesion molecule 4, Landsteiner-Wiener blood group	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-73579615-2	chr18	73579115	73580115	+	868.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039214, intron 1 of 1)	B3A|SINE|B2	6910.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71597026-4	chr8	71596533	71597533	+	868.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166213)	promoter-TSS (NM_001166213)	-613.0	NM_001166213	100037278.0	Mm.482159	NM_001166213	ENSMUSG00000043243	Fam129c	Bcnp1	family with sequence similarity 129, member C	protein-coding	4.5	8.0	2.5	1.0	4.0	1.0
Merged-chr6-124756179-4	chr6	124755713	124756713	+	868.744446	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007881, intron 1 of 9)	G-rich|Low_complexity|Low_complexity	274.0	NM_007881	13498.0	Mm.333380	NM_007881	ENSMUSG00000004263	Atn1	Atr1|Drpla|atrophin-1	atrophin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134433464-4	chr6	134432980	134433980	+	868.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355686, intron 5 of 5)	intron (NM_001355686, intron 5 of 5)	19052.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	13.0	22.0	22.0	17.0	9.0	8.0
Merged-chr5-34210424-4	chr5	34209927	34210927	+	868.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 8 of 12)	intron (NM_001015039, intron 8 of 12)	-22717.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173456532-4	chr1	173456047	173457047	+	868.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 5 of 8)	intron (NM_001013779, intron 5 of 8)	35943.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	5.0	1.5	0.5	3.5	2.5	0.0
Merged-chr11-77604539-4	chr11	77604048	77605048	+	868.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144825, intron 1 of 19)	intron (NM_144825, intron 1 of 19)	3267.0	NM_144825	216965.0	Mm.340436	NM_144825	ENSMUSG00000017291	Taok1	2810468K05Rik|AU020252|D130018F14Rik|Map3k16|Markk|Psk2|mKIAA1361	TAO kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95575793-4	chr9	95575303	95576303	+	868.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15986.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	14.5	58.0	37.5	14.5	58.5	38.5
Merged-chr7-126099188-4	chr7	126098720	126099720	+	868.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16809.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75456357-3	chr11	75455841	75456841	+	868.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1624.0	NM_138950	192652.0	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94501720-3	chr16	94501224	94502224	+	868.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 6 of 7)	intron (NM_007834, intron 6 of 7)	24905.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65188792-3	chr9	65188290	65189290	+	868.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25900.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30658491-3	chr13	30658002	30659002	+	868.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1557.0	NM_001037955	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121421682-4	chr14	121421179	121422179	+	868.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42449.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110616452-3	chr7	110615945	110616945	+	868.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-1525.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30649997-3	chr5	30649493	30650493	+	868.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175675, intron 1 of 5)	intron (NM_175675, intron 1 of 5)	2054.0	NM_175675	74919.0	Mm.247985	NM_175675	ENSMUSG00000029175	Slc35f6	4930471M23Rik|5730478O19Rik|ANT2BP|P40|Tango9	solute carrier family 35, member F6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73971086-3	chr17	73970572	73971572	+	868.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20876.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55231539-3	chr19	55231031	55232031	+	868.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 4 of 20)	intron (NM_001081076, intron 4 of 20)	9705.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6513971-2	chr19	6513471	6514471	+	868.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 20 of 22)	intron (NM_001205234, intron 20 of 22)	29099.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166655920-3	chr2	166655421	166656421	+	868.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	L2a|LINE|L2	57911.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87017117-3	chr6	87016594	87017594	+	868.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020045, intron 3 of 7)	B3A|SINE|B2	7258.0	NM_020045	56748.0	Mm.23809	NM_020045	ENSMUSG00000029993	Nfu1	0610006G17Rik|CGI-33|Hirip5	NFU1 iron-sulfur cluster scaffold	protein-coding	0.0	1.5	0.0	0.0	0.5	0.0
Merged-chr12-111426687-3	chr12	111426188	111427188	+	868.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289487, intron 9 of 13)	MIR|SINE|MIR	9243.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76429611-3	chr16	76429106	76430106	+	868.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55779.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80190801-2	chr10	80190301	80191301	+	868.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007909)	TTS (NM_007909)	11319.0	NM_007909	13637.0	Mm.1478	NM_007909	ENSMUSG00000003070	Efna2	CEK7L|Elf1|Epl6|Eplg6|Lerk6	ephrin A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135781433-2	chr1	135780933	135781933	+	868.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15348.0	NM_013750	27280.0	Mm.34346	NM_013750	ENSMUSG00000041801	Phlda3	Tih1	pleckstrin homology like domain, family A, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135878007-2	chr4	135877507	135878507	+	868.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4161.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34963359-7	chr2	34962879	34963879	+	868.628601	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1607.0	NM_001326601	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118404658-4	chr11	118404168	118405168	+	868.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2709.0	NM_011150	19039.0	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34257128-4	chr13	34256629	34257629	+	868.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	88053.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61056914-4	chr9	61056420	61057420	+	868.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39851.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45966713-4	chr13	45966215	45967215	+	868.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1724.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101999770-3	chr5	101999293	102000293	+	868.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	70128.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	29.5	16.0	27.0	14.5	52.0	43.0
Merged-chr11-69121583-5	chr11	69121172	69122172	+	868.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033041, intron 2 of 3)	intron (NM_033041, intron 2 of 3)	1219.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	7.5	1.0	1.0	11.0	2.5	5.0
Merged-chr16-38348469-4	chr16	38347956	38348956	+	868.587524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017429, intron 1 of 2)	intron (NM_001017429, intron 1 of 2)	1457.0	NM_001017429	12856.0	Mm.27396	NM_001017429	ENSMUSG00000046516	Cox17	AI037035	cytochrome c oxidase assembly protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111924651-4	chr13	111924151	111925151	+	868.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56715.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-33214838-3	chr18	33214341	33215341	+	868.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133774)	promoter-TSS (NM_133774)	-979.0	NM_001347624	170459.0	Mm.127058	NM_133774	ENSMUSG00000024378	Stard4	4632419C16Rik|9030213J02Rik	StAR-related lipid transfer (START) domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60668166-3	chr13	60667664	60668664	+	868.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	MLT1J|LTR|ERVL-MaLR	65953.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	20.0	8.0	5.5	3.0	11.0	10.5
Merged-chr6-84796391-3	chr6	84795841	84796841	+	868.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 18 of 21)	intron (NM_177077, intron 18 of 21)	-202433.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-125099755-3	chr4	125099229	125100229	+	868.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151472, intron 4 of 7)	intron (NR_151472, intron 4 of 7)	14595.0	NR_151472	70088.0	Mm.291214	NM_027310	ENSMUSG00000028863	Meaf6	2310005N01Rik|2810036M01Rik	MYST/Esa1-associated factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86372099-4	chr1	86371506	86372506	+	868.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12432.0	NR_015507	319336.0	Mm.389155	NR_015507	ENSMUSG00000073627	C130036L24Rik	-	RIKEN cDNA C130036L24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80684408-4	chr10	80683913	80684913	+	868.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172457)	TTS (NM_172457)	-8120.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-28699872-6	chr2	28699361	28700361	+	868.5347289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027283)	promoter-TSS (NM_027283)	-210.0	NM_027283	69987.0	Mm.239376	NM_027283	ENSMUSG00000026809	Spaca9	1700026L06Rik|MAST	sperm acrosome associated 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62127992-4	chr15	62127501	62128501	+	868.520874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 2 of 6)	intron (NR_132746, intron 2 of 6)	88744.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-21951834-4	chr3	21951342	21952342	+	868.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	-124810.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-99187694-2	chr4	99187212	99188212	+	868.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-6222.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	56.0	67.5	65.5	33.5	59.5	75.0
Merged-chr8-63861453-2	chr8	63860953	63861953	+	868.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	90717.0	NM_001195687	244495.0	Mm.485331	NM_001195687	ENSMUSG00000094443	Sgo2b	EG244495|Gm4975|Sgol2b	shugoshin 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-94581416-3	chr3	94580917	94581917	+	868.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082484, intron 1 of 11)	intron (NM_001082484, intron 1 of 11)	1299.0	NM_001082484	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	0.0	2.5	0.0	0.0	5.0	0.0
Merged-chr2-34790467-4	chr2	34789951	34790951	+	868.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145522, intron 4 of 7)	ORR1A2|LTR|ERVL-MaLR	9461.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27227239-2	chr7	27226739	27227739	+	868.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181593, intron 1 of 6)	intron (NM_181593, intron 1 of 6)	1358.0	NM_181593	233011.0	Mm.30963	NM_181593	ENSMUSG00000003752	Itpkc	9130023N17Rik	inositol 1,4,5-trisphosphate 3-kinase C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-124144497-2	chr9	124143997	124144997	+	868.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12BD_Mm|LTR|ERVK	22954.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53326531-2	chr19	53326031	53327031	+	868.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	intron (NM_001360348, intron 1 of 5)	-2882.0	NM_010847	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106038297-2	chr11	106037797	106038797	+	868.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027946, intron 1 of 6)	intron (NM_027946, intron 1 of 6)	1425.0	NM_027946	71833.0	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137536993-2	chr5	137536493	137537493	+	868.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3687.0	NM_010312	14693.0	Mm.30141	NM_010312	ENSMUSG00000029713	Gnb2	Gnb-2	guanine nucleotide binding protein (G protein), beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88536448-2	chr15	88535948	88536948	+	868.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63854.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4389506-4	chr2	4389016	4390016	+	868.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172475, intron 1 of 22)	intron (NM_172475, intron 1 of 22)	-11460.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38948147-2	chr6	38947647	38948647	+	868.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	ORR1A2|LTR|ERVL-MaLR	29161.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-3007544-2	chr9	3007043	3008043	+	868.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	31200.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91182927-4	chr2	91182450	91183450	+	868.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145527)	promoter-TSS (NM_145527)	97.0	NM_001177719	228355.0	Mm.36410	NM_145527	ENSMUSG00000040687	Madd	9630059K23Rik|IG20	MAP-kinase activating death domain	protein-coding	0.5	4.5	6.0	0.5	4.5	6.5
Merged-chr15-8994131-2	chr15	8993631	8994631	+	868.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198024, intron 1 of 13)	Lx7|LINE|L1	26182.0	NM_198024	223332.0	Mm.321371	NM_198024	ENSMUSG00000048424	Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114273601-2	chr6	114273101	114274101	+	868.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-9034.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-26201098-4	chr11	26200608	26201608	+	868.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027973, intron 1 of 5)	intron (NR_027973, intron 1 of 5)	-1132.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78513629-2	chr11	78513129	78514129	+	868.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026389, intron 1 of 10)	intron (NM_026389, intron 1 of 10)	1333.0	NM_026389	67811.0	Mm.197493	NM_026389	ENSMUSG00000001100	Poldip2	1300003F06Rik|Pdip38	polymerase (DNA-directed), delta interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101170562-2	chr4	101170062	101171062	+	868.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 11 of 24)	intron (NM_146145, intron 11 of 24)	94720.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150743320-2	chr4	150742820	150743820	+	868.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91146.0	NM_173774	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75846672-2	chr14	75846172	75847172	+	868.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009429, intron 3 of 5)	intron (NM_009429, intron 3 of 5)	-1251.0	NR_028481	100303751.0	Mm.484707	NR_028481	ENSMUSG00000065147	Snora31	MBI-161	small nucleolar RNA, H/ACA box 31	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-77419990-4	chr8	77419519	77420519	+	868.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 7 of 22)	intron (NM_030113, intron 7 of 22)	-97037.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95973480-4	chr10	95972980	95973980	+	868.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001932, intron 1 of 28)	intron (NM_001001932, intron 1 of 28)	32817.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128694286-2	chr2	128693790	128694790	+	868.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4625.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150927491-2	chr4	150926991	150927991	+	868.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077509)	promoter-TSS (NM_001077509)	-508.0	NM_001077509	21942.0	Mm.244187	NM_011612	ENSMUSG00000028965	Tnfrsf9	4-1BB|A930040I11Rik|AA408498|AI325004|CDw137|Cd137|ILA|Ly63	tumor necrosis factor receptor superfamily, member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19029481-3	chr7	19028975	19029975	+	868.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360713, intron 3 of 22)	intron (NM_001360713, intron 3 of 22)	5098.0	NM_026605	68188.0	Mm.130902	NM_026605	ENSMUSG00000023118	Sympk	1500016F02Rik|4632415H16Rik|AA125406|AI449890|SPK|SYM	symplekin	protein-coding	2.0	1.5	3.0	1.5	4.5	0.0
Merged-chr11-74520852-2	chr11	74520352	74521352	+	868.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	MER113|DNA|hAT-Charlie	69306.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75387612-2	chr18	75387112	75388112	+	868.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042660, intron 3 of 3)	intron (NM_001042660, intron 3 of 3)	20247.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-48789361-2	chr11	48788861	48789861	+	868.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10999.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3902552-2	chr12	3902052	3903052	+	868.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 13 of 17)	intron (NM_153743, intron 13 of 17)	10808.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-84969386-2	chr16	84968886	84969886	+	868.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 13 of 15)	intron (NM_001198825, intron 13 of 15)	-2825.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5932840-2	chr19	5932340	5933340	+	868.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-8024.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120578196-2	chr9	120577696	120578696	+	868.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_073359)	TTS (NR_073359)	865.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35796260-4	chr7	35795751	35796751	+	868.49585	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177739, intron 2 of 6)	intron (NM_177739, intron 2 of 6)	-6341.0	NR_033567	78547.0	Mm.406883	NR_033567	ENSMUSG00000044997	E130304I02Rik	-	RIKEN cDNA E130304I02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-71875460-3	chr7	71874965	71875965	+	868.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-34230.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	17.5	15.5	28.5	32.0	61.0	57.0
Merged-chr12-10438282-3	chr12	10437813	10438813	+	868.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8075.0	NR_110487	328061.0	Mm.56067	NR_110487	ENSMUSG00000112792	Gm38407	4931412M21	predicted gene, 38407	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-3885638-4	chr16	3885081	3886081	+	868.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290689, intron 1 of 5)	intron (NM_001290689, intron 1 of 5)	962.0	NM_001290689	74763.0	Mm.28403	NM_029090	ENSMUSG00000005982	Naa60	1200013P24Rik|AI315146|HAT4|Nat15|NatF	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73948941-4	chr17	73948516	73949516	+	868.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 1 of 35)	intron (NM_011723, intron 1 of 35)	1180.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111295565-3	chr9	111295071	111296071	+	868.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	-16168.0	NM_001164659	320429.0	Mm.270754	NM_001164659	ENSMUSG00000062296	Trank1	A230061D21Rik|C030048J01Rik|Gm187|Lba1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding	0.0	3.5	0.0	1.5	0.0	0.0
Merged-chr6-31413092-3	chr6	31412585	31413585	+	868.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013791, intron 1 of 17)	intron (NM_013791, intron 1 of 17)	14257.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-63130062-4	chr1	63129557	63130557	+	868.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045914, intron 1 of 3)	ERVB7_1-LTR_MM|LTR|ERVK	15317.0	NR_045914	100380944.0	Mm.392955	NR_045914	ENSMUSG00000084799	Ino80dos	Gm11602	INO80 complex subunit D, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82470206-4	chr18	82469707	82470707	+	868.4249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4916.0	NM_001025245	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129197286-2	chr2	129196786	129197786	+	868.4166869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1487.0	NM_015747	20515.0	Mm.272675	NM_015747	ENSMUSG00000027397	Slc20a1	AI607883|Glvr-1|Glvr1	solute carrier family 20, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119613225-6	chr13	119612693	119613693	+	868.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10626.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19797386-4	chr7	19796897	19797897	+	868.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023224)	promoter-TSS (NM_023224)	-588.0	NM_023224	80794.0	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171437517-4	chr1	171437059	171438059	+	868.408325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151523)	promoter-TSS (NR_151523)	-2.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	8.0	30.0	15.0	0.0	2.5	5.5
Merged-chr4-141136967-2	chr4	141136467	141137467	+	868.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277195, intron 1 of 3)	intron (NM_001277195, intron 1 of 3)	2829.0	NR_102344	213491.0	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-77309415-4	chr5	77308744	77309744	+	868.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019836, exon 1 of 7)	exon (NM_019836, exon 1 of 7)	842.0	NM_019836	56412.0	Mm.129136	NM_019836	ENSMUSG00000036285	Noa1	2610024G14Rik|AU022345|AtNOS1|mAtNOS1	nitric oxide associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80220464-4	chr15	80219960	80220960	+	868.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13620.0	NM_001357659	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	16.0	25.0	34.5	7.5	45.5	26.5
Merged-chr14-100286126-6	chr14	100285638	100286638	+	868.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-136342.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29247417-3	chr7	29246912	29247912	+	868.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028179)	TTS (NM_028179)	1055.0	NM_028179	72275.0	Mm.441142	NM_028179	ENSMUSG00000030587	2200002D01Rik	2010005J02Rik|H2RSP|IMUP|IMUP-1|IMUP-2	RIKEN cDNA 2200002D01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34772971-4	chr19	34772465	34773465	+	868.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25854.0	NM_172838	240638.0	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	0.0	0.0	5.0	0.0	0.0	5.5
Merged-chr10-99133482-4	chr10	99133021	99134021	+	868.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 4 of 12)	intron (NR_153333, intron 4 of 12)	25386.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21168087-4	chr13	21167562	21168562	+	868.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11869.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	0.0	0.0	6.5	0.5	0.0	4.5
Merged-chr11-119039332-2	chr11	119038832	119039832	+	868.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_013926, exon 5 of 5)	exon (NM_013926, exon 5 of 5)	1581.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-80963427-2	chr13	80962927	80963927	+	868.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015587)	promoter-TSS (NR_015587)	-647.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23308458-2	chr16	23307958	23308958	+	868.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252506, intron 1 of 6)	intron (NM_001252506, intron 1 of 6)	17988.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-132176979-1	chr3	132176479	132177479	+	868.3333130000001	f0_balb.idr	intron (NM_020265, intron 3 of 3)	intron (NM_020265, intron 3 of 3)	91687.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-57197206-3	chr12	57196720	57197720	+	868.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172577, exon 1 of 10)	5' UTR (NM_172577, exon 1 of 10)	252.0	NM_172577	217593.0	Mm.32835	NM_172577	ENSMUSG00000035472	Slc25a21	9930033G19Rik|A630030I10|BB158148	solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137510694-3	chr5	137510191	137511191	+	868.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-8189.0	NM_031408	57330.0	Mm.268344	NM_031408	ENSMUSG00000029714	Gigyf1	Perq1|mKIAA4110	GRB10 interacting GYF protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46484196-3	chr17	46483763	46484763	+	868.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001162864, exon 2 of 15)	5' UTR (NM_001162864, exon 2 of 15)	3412.0	NM_001162864	106763.0	Mm.297613	NM_175351	ENSMUSG00000015599	Ttbk1	AU017937|AW048023|C330008L01Rik	tau tubulin kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84515636-4	chr10	84515157	84516157	+	868.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18231.0	NM_175451	216197.0	Mm.334999	NM_175451	ENSMUSG00000046841	Ckap4	5630400A09Rik|CLIMP-63|P63	cytoskeleton-associated protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144825363-4	chr3	144824861	144825861	+	868.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_139148, exon 13 of 14)	exon (NM_139148, exon 13 of 14)	-5867.0	NM_030601	80797.0	Mm.20897	NM_030601	ENSMUSG00000028262	Clca3a2	Clca2	chloride channel accessory 3A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118623606-3	chr9	118623083	118624083	+	868.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	Lx8|LINE|L1	16874.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135972102-4	chr4	135971600	135972600	+	868.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011942, intron 1 of 9)	intron (NM_011942, intron 1 of 9)	494.0	NM_011942	26394.0	Mm.34302	NM_011942	ENSMUSG00000028670	Lypla2	LysoII	lysophospholipase 2	protein-coding	0.5	2.0	1.5	0.0	1.0	6.5
Merged-chr10-81358345-3	chr10	81357844	81358844	+	868.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028657, intron 1 of 9)	intron (NM_028657, intron 1 of 9)	853.0	NM_028657	73822.0	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1|gr	major facilitator superfamily domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113417755-3	chr13	113417258	113418258	+	868.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85086.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-6632667-3	chr13	6632167	6633167	+	868.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019703, intron 2 of 21)	intron (NM_019703, intron 2 of 21)	16104.0	NM_019703	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117406697-3	chr8	117406206	117407206	+	868.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 3 of 20)	intron (NM_028941, intron 3 of 20)	-46317.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25254786-2	chr2	25254286	25255286	+	868.3333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177344)	promoter-TSS (NM_177344)	628.0	NM_001252541	78797.0	Mm.40020	NM_178239	ENSMUSG00000006471	Ndor1	4930447P04Rik|NR1|Ndor|Tg(UBC-cre/ERT2)1Ejb|Ubc-cre	NADPH dependent diflavin oxidoreductase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-55333750-3	chr3	55333255	55334255	+	868.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357475, intron 3 of 16)	intron (NM_001357475, intron 3 of 16)	91391.0	NM_001357466	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40785906-3	chr9	40785333	40786333	+	868.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15440.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	28.0	60.5	25.5	24.5	25.5	24.0
Merged-chr2-170239256-5	chr2	170238798	170239798	+	868.2999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96623.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107247693-3	chr9	107247194	107248194	+	868.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15785.0	NM_153413	208869.0	Mm.150259	NM_153413	ENSMUSG00000039716	Dock3	MOCA|PBP|mKIAA0299	dedicator of cyto-kinesis 3	protein-coding	5.0	2.0	7.0	0.0	0.0	0.0
Merged-chr2-37702986-3	chr2	37702492	37703492	+	868.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-14708.0	NR_039590	100628597.0		NR_039590	ENSMUSG00000092958	Mir5128	mir-5128|mmu-mir-5128|mu-mir-5128	microRNA 5128	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86956608-4	chr11	86956105	86957105	+	868.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005341, intron 2 of 4)	intron (NM_001005341, intron 2 of 4)	37157.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-117311699-4	chr13	117311182	117312182	+	868.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91109.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88000583-4	chr3	88000088	88001088	+	868.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001109758)	promoter-TSS (NM_001109758)	-232.0	NM_001109758	12032.0	Mm.4598	NM_007529	ENSMUSG00000004892	Bcan	Cspg7	brevican	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136695093-4	chr1	136694652	136695652	+	868.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1059.0	NR_037986	100503474.0	Mm.428276	NR_037986		Platr22	Gm16880	pluripotency associated transcript 22	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144718015-4	chr3	144717512	144718512	+	868.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 1 of 10)	intron (NM_001282037, intron 1 of 10)	2323.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76332040-2	chr15	76331540	76332540	+	868.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_010331, exon 2 of 12)	exon (NM_010331, exon 2 of 12)	746.0	NM_010331	14731.0	Mm.5903	NM_010331	ENSMUSG00000022561	Gpaa1	C80044|mGAA1	GPI anchor attachment protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-104544735-4	chr11	104544247	104545247	+	868.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145436, intron 1 of 18)	intron (NM_145436, intron 1 of 18)	5873.0	NM_001285990	217232.0	Mm.89845	NM_145436	ENSMUSG00000020687	Cdc27	AI452358|APC3|BC023187	cell division cycle 27	protein-coding	29.5	78.0	66.5	41.5	84.5	86.5
Merged-chr15-63926644-2	chr15	63926144	63927144	+	868.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12183.0	NR_029414	74460.0	Mm.390801	NR_029414	ENSMUSG00000100127	Gsdmcl-ps	4933426G20Rik	gasdermin C-like, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66266342-3	chr14	66265791	66266791	+	868.2222289999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	14761.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	8.5	28.0	28.0	24.5	19.5	10.0
Merged-chr2-118389789-3	chr2	118389294	118390294	+	868.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177806, intron 1 of 37)	intron (NM_001177806, intron 1 of 37)	682.0	NM_001177806	27103.0	Mm.217616	NM_013719	ENSMUSG00000005102	Eif2ak4	2610011M03|GCN2|MGCN2	eukaryotic translation initiation factor 2 alpha kinase 4	protein-coding	56.0	191.5	120.5	35.5	178.5	101.0
Merged-chr15-58754785-3	chr15	58754279	58755279	+	868.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68648.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	4.5	5.0	4.0	2.0	7.0	10.0
Merged-chr13-112801516-3	chr13	112801020	112802020	+	868.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008903, intron 1 of 5)	intron (NM_008903, intron 1 of 5)	743.0	NM_008247	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	11.5	24.5	19.0	23.0	14.0	8.0
Merged-chr1-171285531-3	chr1	171285054	171286054	+	868.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013919, exon 3 of 13)	exon (NM_013919, exon 3 of 13)	2407.0	NM_013919	30941.0	Mm.27510	NM_013919	ENSMUSG00000053483	Usp21	ESTM28|Usp16|Usp23|W53272	ubiquitin specific peptidase 21	protein-coding	19.5	31.0	24.5	15.5	57.5	19.0
Merged-chr2-102500206-3	chr2	102499718	102500718	+	868.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-48426.0	NM_010218	14221.0	Mm.29730	NM_010218	ENSMUSG00000075012	Fjx1	-	four jointed box 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-146848113-2	chr2	146847627	146848627	+	868.216675	f0_balb.idr|f1_balb.idr	Intergenic	LTR16C|LTR|ERVL	-7762.0	NM_001033298	228730.0	Mm.292352	NM_001033298	ENSMUSG00000074749	Kiz	Gm114|Ncrna00153|Plk1s1	kizuna centrosomal protein	protein-coding	0.5	7.0	10.5	23.5	110.5	44.5
Merged-chr14-31669352-4	chr14	31668854	31669854	+	868.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28297.0	NM_025295	26363.0	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152692086-4	chr2	152691581	152692581	+	868.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010376, intron 8 of 11)	intron (NM_010376, intron 8 of 11)	4933.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	17.5	21.5	41.5	2.5	6.0	24.0
Merged-chr9-119343272-3	chr9	119342746	119343746	+	868.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357516, intron 3 of 10)	intron (NM_001357516, intron 3 of 10)	1952.0	NM_001357516	113868.0	Mm.205266	NM_130864	ENSMUSG00000036138	Acaa1a	Acaa|Acaa1|D9Ertd25e|PTL	acetyl-Coenzyme A acyltransferase 1A	protein-coding	10.0	4.5	13.5	15.0	36.5	26.5
Merged-chr5-62845010-4	chr5	62844494	62845494	+	868.195801	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 6 of 8)	intron (NM_001170705, intron 6 of 8)	31171.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	16.5	81.5	44.5	31.5	41.5	38.5
Merged-chr11-64205136-2	chr11	64204636	64205636	+	868.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD2|LINE|L1	125652.0	NR_033780	66456.0	Mm.124828	NR_033780	ENSMUSG00000087497	2810001G20Rik	AW045514	RIKEN cDNA 2810001G20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32390228-4	chr18	32389722	32390722	+	868.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 1 of 17)	intron (NM_001360876, intron 1 of 17)	-11938.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-33497176-4	chr4	33496666	33497666	+	868.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305273, intron 14 of 15)	intron (NM_001305273, intron 14 of 15)	59085.0	NR_106198	102465904.0		NR_106198	ENSMUSG00000098310	Mir8118	Gm27954|mmu-mir-8118	microRNA 8118	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10458307-4	chr19	10457799	10458799	+	868.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111140)	promoter-TSS (NM_001111140)	-852.0	NM_001111140	278795.0	Mm.490638	NM_001111140	ENSMUSG00000090291	Lrrc10b	Gm705|SerdinR	leucine rich repeat containing 10B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-126602422-4	chr2	126601928	126602928	+	868.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008230, intron 7 of 11)	intron (NM_008230, intron 7 of 11)	16250.0	NM_008230	15186.0	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145034207-3	chr7	145033698	145034698	+	868.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR9D|LTR|ERVK	-94273.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	3.0	1.5	5.5	3.0	0.0	2.0
Merged-chr11-119862089-2	chr11	119861589	119862589	+	868.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_028898, intron 20 of 33)	intron (NM_028898, intron 20 of 33)	-20200.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123360727-3	chr8	123360199	123361199	+	868.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172287, intron 9 of 14)	intron (NM_172287, intron 9 of 14)	-13012.0	NM_001359076	66855.0	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-115936944-2	chr3	115936448	115937448	+	868.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-42954.0	NR_130332	100316705.0		NR_130332	ENSMUSG00000089261	Mir669n	mmu-mir-669n	microRNA 669n	ncRNA	0.0	6.5	2.5	0.0	2.0	5.0
Merged-chr19-55897798-2	chr19	55897298	55898298	+	868.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142924, intron 1 of 11)	intron (NM_001142924, intron 1 of 11)	2477.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-30848353-2	chr3	30847853	30848853	+	868.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-7597.0	NM_001134386	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51620573-2	chr11	51620073	51621073	+	868.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026631, intron 2 of 3)	intron (NM_026631, intron 2 of 3)	800.0	NM_026631	52530.0	Mm.28203	NM_026631	ENSMUSG00000001056	Nhp2	2410130M07Rik|D11Ertd175e|Nola2	NHP2 ribonucleoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-21264386-4	chr12	21263884	21264884	+	868.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004364, intron 23 of 26)	intron (NM_001004364, intron 23 of 26)	21900.0	NM_008403	16413.0	Mm.273333	NM_008403	ENSMUSG00000062352	Itgb1bp1	AI449260|AU019480|Icap1	integrin beta 1 binding protein 1	protein-coding	29.5	29.0	26.0	8.0	21.5	7.5
Merged-chr19-10295377-4	chr19	10294860	10295860	+	868.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	9517.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	29.0	80.5	42.0	27.0	52.5	36.5
Merged-chr12-36041870-4	chr12	36041356	36042356	+	868.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025359, intron 1 of 5)	intron (NM_025359, intron 1 of 5)	622.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-34034995-3	chr3	34034501	34035501	+	868.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113189, intron 1 of 16)	intron (NM_001113189, intron 1 of 16)	14922.0	NM_001113189	14359.0	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27545839-3	chr7	27545329	27546329	+	868.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011116, intron 1 of 13)	RMER19B|LTR|ERVK	7389.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-93990474-3	chr13	93989983	93990983	+	868.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67313.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26907361-4	chr2	26906895	26907895	+	868.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011513, exon 3 of 3)	3' UTR (NM_011513, exon 3 of 3)	3247.0	NM_011513	20933.0	Mm.397932	NM_011513	ENSMUSG00000015776	Med22	AW212655|AW558812|Surf-5|Surf5	mediator complex subunit 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89074182-4	chr15	89073676	89074676	+	868.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040417, exon 2 of 4)	non-coding (NR_040417, exon 2 of 4)	1678.0	NR_040417	69120.0	Mm.276391	NR_040417	ENSMUSG00000087331	1810021B22Rik	-	RIKEN cDNA 1810021B22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128837685-4	chr6	128837167	128838167	+	868.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-11352.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150488918-3	chr4	150488414	150489414	+	868.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 7 of 22)	intron (NM_001085492, intron 7 of 22)	163260.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	21.5	27.0	13.0	14.0	36.0	27.5
Merged-chr10-24630794-4	chr10	24630292	24631292	+	868.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35350.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13678473-3	chr8	13677990	13678990	+	868.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009025)	promoter-TSS (NM_009025)	-903.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70994806-3	chr17	70994334	70995334	+	868.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026064, intron 3 of 3)	intron (NM_026064, intron 3 of 3)	3178.0	NM_001357820	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	19.0	33.0	31.5	42.0	85.5	67.0
Merged-chr15-78903435-4	chr15	78902945	78903945	+	868.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316685, intron 6 of 17)	intron (NM_001316685, intron 6 of 17)	3677.0	NM_009164	20401.0	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	2.5	9.5	8.5	6.0	20.0	7.5
Merged-chr19-59026002-8	chr19	59025607	59026607	+	868.0520630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 8 of 16)	intron (NM_001114312, intron 8 of 16)	49962.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100585691-2	chr5	100585191	100586191	+	868.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-13486.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-21369685-2	chr12	21369202	21370202	+	868.0	f0_c57.idr|f1_balb.idr	intron (NM_001291871, intron 1 of 18)	intron (NM_001291871, intron 1 of 18)	3930.0	NR_102380	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	266.0	526.5	403.0	195.5	441.0	256.5
Merged-chr7-80343541-2	chr7	80343041	80344041	+	868.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026812, exon 2 of 4)	exon (NM_026812, exon 2 of 4)	404.0	NM_026812	68695.0	Mm.21171	NM_026812	ENSMUSG00000030532	Hddc3	1110033O09Rik|C86475|MESH1	HD domain containing 3	protein-coding	0.0	1.5	0.0	5.0	5.5	1.0
Merged-chr7-127022227-2	chr7	127021727	127022727	+	868.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010772)	TTS (NM_010772)	-1016.0	NM_001102563	69017.0	Mm.392047	NM_001102563	ENSMUSG00000045114	Prrt2	1500031I19Rik|AI195361|DSPB3	proline-rich transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165861236-1	chr2	165860736	165861736	+	868.0	f1_balb.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	-3063.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	4.0	1.0	6.0	4.0	7.5	9.0
Merged-chr4-3066290-2	chr4	3065790	3066790	+	868.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105793.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57523012-2	chr9	57522512	57523512	+	868.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007747, intron 1 of 4)	ID_B1|SINE|B4	1780.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-12991054-2	chr1	12990519	12991519	+	868.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172841, exon 1 of 9)	5' UTR (NM_172841, exon 1 of 9)	116.0	NM_172841	240726.0	Mm.24481	NM_172841	ENSMUSG00000025938	Slco5a1	4732454B15|A630033C23Rik|AA407151	solute carrier organic anion transporter family, member 5A1	protein-coding	0.0	0.0	0.5	1.0	1.0	0.0
Merged-chr3-123322293-3	chr3	123321784	123322784	+	868.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027135, intron 8 of 22)	intron (NM_027135, intron 8 of 22)	54788.0	NM_027135	69608.0	Mm.29293	NM_027135	ENSMUSG00000039234	Sec24d	2310020L09Rik|Gm1349	Sec24 related gene family, member D (S. cerevisiae)	protein-coding	0.0	1.5	7.5	4.5	2.5	2.5
Merged-chr3-144207730-3	chr3	144207232	144208232	+	868.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2477.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191120155-2	chr1	191119655	191120655	+	868.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	21741.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	3.5	30.0	15.0	55.0	83.0	111.5
Merged-chr11-59527517-3	chr11	59527056	59528056	+	868.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14013.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-64496870-4	chr11	64496362	64497362	+	868.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178870, intron 1 of 1)	intron (NM_178870, intron 1 of 1)	-60188.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	88.5	66.5	89.0	25.5	61.0	50.5
Merged-chr16-66480347-2	chr16	66479847	66480847	+	868.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-176771.0	NR_040512	75501.0	Mm.394300	NR_040512	ENSMUSG00000092599	1700010K23Rik	-	RIKEN cDNA 1700010K23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115675012-2	chr6	115674512	115675512	+	868.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152134)	promoter-TSS (NR_152134)	876.0	NM_001356334	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136145969-2	chr1	136145469	136146469	+	868.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 3 of 34)	intron (NM_001039472, intron 3 of 34)	14579.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55204889-3	chr11	55204357	55205357	+	868.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153139, intron 1 of 10)	intron (NM_153139, intron 1 of 10)	517.0	NM_153139	215335.0	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-97431469-4	chr16	97430965	97431965	+	868.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019517, intron 8 of 8)	ID_B1|SINE|B4	31440.0	NM_010846	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-80935352-1	chr13	80934852	80935852	+	868.0	f0_balb.idr	Intergenic	Intergenic	-5051.0	NR_103550	71416.0	Mm.415500	NR_103550		5430425K12Rik	-	RIKEN cDNA 5430425K12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34206700-1	chr19	34206200	34207200	+	868.0	f0_balb.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	-10808.0	NM_001360719	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	9.5	16.5	6.5	9.5	16.5	7.5
Merged-chr8-84649901-1	chr8	84649401	84650401	+	868.0	f1_c57bl6.idr	Intergenic	Intergenic	12951.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.0	0.0	0.0	5.5	3.0	0.5
Merged-chr13-30729538-5	chr13	30729062	30730062	+	868.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19671.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.0	4.0	0.0	0.0	5.5	0.0
Merged-chr12-108808209-4	chr12	108807696	108808696	+	868.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009537, intron 2 of 4)	intron (NM_009537, intron 2 of 4)	14885.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-34177042-1	chr15	34176542	34177542	+	868.0	f1_balb.idr	Intergenic	RMER13B|LTR|ERVK	-60984.0	NM_033521	114128.0	Mm.197518	NM_033521	ENSMUSG00000022257	Laptm4b	C330023P13Rik|LAPTM4beta	lysosomal-associated protein transmembrane 4B	protein-coding	0.0	3.0	0.0	1.0	5.0	4.0
Merged-chr11-95822283-2	chr11	95821783	95822783	+	868.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2217.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34086093-2	chr11	34085692	34086692	+	868.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 17 of 20)	intron (NM_010696, intron 17 of 20)	12362.0	NR_155520	76874.0	Mm.437529	NR_155520		4930469K13Rik	-	RIKEN cDNA 4930469K13 gene	ncRNA	11.0	6.0	3.0	3.0	4.0	4.0
Merged-chr3-69317754-2	chr3	69317254	69318254	+	868.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178726, exon 1 of 4)	exon (NM_178726, exon 1 of 4)	836.0	NM_178726	242083.0	Mm.40577	NM_178726	ENSMUSG00000027784	Ppm1l	3222401G13|5930404J21Rik|AI481720|AW045850|PP2C|PP2Cepsilon|Pp2ce|Ppp2ce|mKIAA4175	protein phosphatase 1 (formerly 2C)-like	protein-coding	0.0	0.0	0.0	5.0	2.0	1.0
Merged-chr11-74670504-2	chr11	74670004	74671004	+	868.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081158, exon 26 of 26)	3' UTR (NM_001081158, exon 26 of 26)	21009.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	0.0	0.0	1.0	3.0	2.0	2.0
Merged-chr15-39907267-1	chr15	39906767	39907767	+	868.0	f0_balb.idr	intron (NM_172814, intron 1 of 6)	intron (NM_172814, intron 1 of 6)	36727.0	NM_001347036	239393.0	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9710254-2	chr3	9709754	9710754	+	868.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 2 of 7)	Lx5c|LINE|L1	-100169.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-89910962-2	chr16	89910462	89911462	+	868.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 2 of 27)	intron (NM_009384, intron 2 of 27)	49865.0	NM_009384	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr2-113396107-3	chr2	113395592	113396592	+	868.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285458, intron 2 of 16)	intron (NM_001285458, intron 2 of 16)	-44972.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	1.0	7.0	3.5	5.0	1.0	0.5
Merged-chr15-74982582-1	chr15	74982082	74983082	+	868.0	f1_c57bl6.idr	intron (NM_020498, intron 1 of 2)	intron (NM_020498, intron 1 of 2)	848.0	NM_001358005	57248.0	Mm.358339	NM_020498	ENSMUSG00000022586	Ly6i	AI789751|Ly-6I|Ly-6M	lymphocyte antigen 6 complex, locus I	protein-coding	1.5	6.0	7.5	0.0	0.0	2.5
Merged-chr16-11256506-2	chr16	11256006	11257006	+	868.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2061.0	NR_035466	100316833.0		NR_035466	ENSMUSG00000088544	Mir1945	mir-1945|mmu-mir-1945	microRNA 1945	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-42009875-1	chr18	42009375	42010375	+	868.0	f0_balb.idr	Intergenic	MER20B|DNA|hAT-Charlie	-10826.0	NM_001033426	332309.0	Mm.240520	NM_001033426	ENSMUSG00000073574	Grxcr2	Gm851	glutaredoxin, cysteine rich 2	protein-coding	0.0	0.0	5.0	0.0	3.5	1.0
Merged-chr7-19390823-2	chr7	19390323	19391323	+	868.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007949, intron 15 of 22)	RMER30|DNA|hAT-Charlie	4180.0	NR_030759	100124438.0		NR_030759	ENSMUSG00000076315	Mir343	Mirn343|mmu-mir-343	microRNA 343	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-157416801-4	chr1	157416294	157417294	+	868.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027984, intron 2 of 2)	intron (NR_027984, intron 2 of 2)	-4199.0	NM_177644	226525.0	Mm.235028	NM_177644	ENSMUSG00000070565	Rasal2	6530401P13|A330066M24Rik	RAS protein activator like 2	protein-coding	17.0	45.0	26.5	18.0	34.0	43.5
Merged-chr13-9670107-2	chr13	9669607	9670607	+	868.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93703.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55581049-4	chr19	55580535	55581535	+	868.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	121169.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	10.5	30.5	12.5	7.5	12.5	11.0
Merged-chr1-88273674-2	chr1	88273174	88274174	+	868.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198652, intron 3 of 7)	intron (NM_198652, intron 3 of 7)	3883.0	NM_172505	212427.0	Mm.384762	NM_172505		A730008H23Rik	Fleg1	RIKEN cDNA A730008H23 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35053930-2	chr9	35053430	35054430	+	868.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 6 of 10)	intron (NM_009178, intron 6 of 10)	-62798.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	1.5	8.0	8.5	7.5	5.5	8.0
Merged-chr11-68658123-2	chr11	68657623	68658623	+	868.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33792.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99097574-3	chr10	99097053	99098053	+	868.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9529.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-74250705-2	chr4	74250205	74251205	+	868.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172095, intron 1 of 21)	B2_Mm1t|SINE|B2	-1174.0	NM_144787	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37349354-1	chr13	37348854	37349854	+	868.0	f1_balb.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	4009.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	24.5	68.0	53.0	24.0	56.0	29.5
Merged-chr6-135333904-1	chr6	135333404	135334404	+	868.0	f0_balb.idr	Intergenic	Intergenic	-23520.0	NM_029595	76400.0	Mm.293018	NM_029595	ENSMUSG00000047104	Pbp2	1700023A18Rik|AI326308|Pebp-2|Pebp2	phosphatidylethanolamine binding protein 2	protein-coding	0.0	0.0	3.0	2.5	1.5	2.0
Merged-chr16-89864886-4	chr16	89864357	89865357	+	868.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 8 of 27)	intron (NM_009384, intron 8 of 27)	-46505.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117214811-2	chr10	117214311	117215311	+	868.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026570)	TTS (NM_026570)	9696.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35588457-3	chr8	35587886	35588886	+	868.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081279, exon 1 of 3)	exon (NM_001081279, exon 1 of 3)	588.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105868810-2	chr5	105868310	105869310	+	868.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7758.0	NR_030777	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114792615-2	chr11	114792115	114793115	+	868.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028055, intron 2 of 2)	B3A|SINE|B2	3277.0	NM_028055	72014.0	Mm.38347	NM_028055	ENSMUSG00000000202	Btbd17	1500005I02Rik|Tango10a	BTB (POZ) domain containing 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-39609362-2	chr15	39608862	39609862	+	868.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053271, intron 21 of 26)	intron (NM_053271, intron 21 of 26)	-50149.0	NM_001256384	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58264030-2	chr15	58263530	58264530	+	868.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49138.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-16999017-2	chr11	16998517	16999517	+	868.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	9701.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21033047-3	chr11	21032542	21033542	+	868.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-58282.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102245339-4	chr7	102244809	102245809	+	868.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	4809.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	45.0	58.5	59.0	31.0	60.5	65.5
Merged-chr6-97296537-1	chr6	97296037	97297037	+	868.0	f1_c57bl6.idr	intron (NM_145148, intron 21 of 23)	B4A|SINE|B4	-43757.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	2.5	2.5	8.0	1.5	22.0	15.5
Merged-chr13-102094332-4	chr13	102093870	102094870	+	867.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-326153.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43506885-4	chr1	43506371	43507371	+	867.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	61120.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67569317-4	chr18	67568814	67569814	+	867.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16593.0	NM_194355	68166.0	Mm.208723	NM_176832	ENSMUSG00000024533	Spire1	6030430B19Rik|AI415299|AU022898|AW550622|Spir-1	spire type actin nucleation factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121832773-5	chr8	121832264	121833264	+	867.9500119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3195.0	NM_145605	234825.0	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-55096427-3	chr10	55095963	55096963	+	867.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1010454.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122830587-4	chr8	122830092	122831092	+	867.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17782.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.5	0.0	0.5	4.5	0.0	0.0
Merged-chr1-65536469-4	chr1	65535972	65536972	+	867.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	225215.0	NM_139270	213527.0	Mm.294225	NM_139270	ENSMUSG00000025946	Pth2r	Pthr2	parathyroid hormone 2 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-90606798-4	chr6	90606308	90607308	+	867.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027868, intron 1 of 10)	intron (NM_027868, intron 1 of 10)	1928.0	NM_027868	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105263551-4	chr8	105263030	105264030	+	867.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033161, intron 1 of 4)	intron (NM_001033161, intron 1 of 4)	1064.0	NM_001033161	71609.0	Mm.264255	NM_001033161	ENSMUSG00000031887	Tradd	9130005N23Rik|AA930854	TNFRSF1A-associated via death domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3986322-4	chr4	3985826	3986826	+	867.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	33337.0	NM_181989	242285.0	Mm.98096	NM_181989	ENSMUSG00000028236	Sdr16c5	Rdhe2|Scdr9	short chain dehydrogenase/reductase family 16C, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120122372-4	chr1	120121842	120122842	+	867.8916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172074, intron 1 of 4)	intron (NM_001172074, intron 1 of 4)	1155.0	NM_001172074	73103.0	Mm.271602	NM_028439	ENSMUSG00000026388	3110009E18Rik	-	RIKEN cDNA 3110009E18 gene	protein-coding	34.0	104.0	86.0	37.5	88.0	61.5
Merged-chr2-172392369-3	chr2	172391877	172392877	+	867.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1417.0	NM_001080820	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11323348-3	chr8	11322850	11323850	+	867.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009932, intron 3 of 47)	intron (NM_009932, intron 3 of 47)	-10524.0	NM_009931	12826.0	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133853687-3	chr4	133853192	133854192	+	867.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009097, intron 17 of 21)	intron (NM_009097, intron 17 of 21)	21039.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	5.0	28.5	14.5	6.0	29.0	15.5
Merged-chr2-166483875-3	chr2	166483384	166484384	+	867.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	36433.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83356768-4	chr6	83356250	83357250	+	867.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175277, intron 3 of 3)	intron (NM_175277, intron 3 of 3)	7266.0	NM_175277	78653.0	Mm.391470	NM_175277	ENSMUSG00000045160	Bola3	1810056O20Rik	bolA-like 3 (E. coli)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168249079-2	chr2	168248579	168249579	+	867.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18457.0	NM_001160330	69372.0	Mm.482182	NM_001160330	ENSMUSG00000074576	Mocs3	1700020H17Rik|Uba4	molybdenum cofactor synthesis 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146732357-2	chr5	146731857	146732857	+	867.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	62599.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0.0	3.5	2.0	2.0	10.0	7.0
Merged-chr17-34648889-2	chr17	34648404	34649404	+	867.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_017406, intron 4 of 17)	intron (NM_017406, intron 4 of 17)	1758.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	1.5	13.0	25.0	1.5	34.0	15.0
Merged-chr7-126760268-2	chr7	126759768	126760768	+	867.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011952, intron 1 of 8)	intron (NM_011952, intron 1 of 8)	642.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74124538-4	chr1	74124057	74125057	+	867.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027884)	promoter-TSS (NM_027884)	-108.0	NM_001289895	21961.0	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165923197-3	chr2	165922698	165923698	+	867.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	-38360.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	38.5	184.0	140.0	34.0	147.5	113.0
Merged-chr7-45462062-2	chr7	45461566	45462566	+	867.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_007527, intron 5 of 5)	PB1D10|SINE|Alu	-2180.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	9.5	8.0	20.0	15.0	4.5	17.0
Merged-chr19-7581298-4	chr19	7580804	7581804	+	867.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362425, intron 4 of 4)	MTEa|LTR|ERVL-MaLR	23819.0	NM_001362425	225845.0	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	AdPLA|C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27709693-2	chr3	27709193	27710193	+	867.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 1 of 26)	intron (NM_001356953, intron 1 of 26)	759.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-92150833-4	chr3	92150315	92151315	+	867.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8061.0	NM_027042	69332.0	Mm.120271	NM_027042	ENSMUSG00000027927	Lelp1	1700012F11Rik	late cornified envelope-like proline-rich 1	protein-coding	2.0	3.5	0.5	0.0	2.0	0.0
Merged-chr10-62337351-4	chr10	62336858	62337858	+	867.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010438, intron 4 of 21)	intron (NM_010438, intron 4 of 21)	3063.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46041915-3	chr19	46041457	46042457	+	867.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113408, intron 1 of 10)	intron (NM_001113408, intron 1 of 10)	-2336.0	NM_010697	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	9.0	11.5	2.0	0.0	12.0	5.0
Merged-chr18-5054324-3	chr18	5053834	5054834	+	867.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153153, intron 4 of 34)	intron (NM_153153, intron 4 of 34)	7745.0	NM_001347449	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-47215592-4	chr13	47215099	47216099	+	867.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 2 of 7)	intron (NM_146042, intron 2 of 7)	21596.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	35.5	110.0	75.5	55.5	99.5	100.0
Merged-chr2-27677776-3	chr2	27677258	27678258	+	867.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	CpG	557.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123568354-3	chr5	123567859	123568859	+	867.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359513, intron 4 of 11)	intron (NM_001359513, intron 4 of 11)	4656.0	NM_001359513	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	2.0	0.5	4.0	0.0	0.0	0.0
Merged-chr7-34176462-3	chr7	34175963	34176963	+	867.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-7934.0	NM_016682	50995.0	Mm.27560	NM_016682	ENSMUSG00000052997	Uba2	AA986091|Arx|Sae2|UBA1|Ubl1a2|Uble1b	ubiquitin-like modifier activating enzyme 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110611089-3	chr11	110610608	110611608	+	867.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	131768.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	8.0	8.5	2.5	12.5	13.0	12.0
Merged-chr16-5145764-4	chr16	5145267	5146267	+	867.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1342.0	NM_001127725	665119.0	Mm.102072	NM_001127725	ENSMUSG00000091712	Sec14l5	-	SEC14-like lipid binding 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19873333-2	chr7	19872833	19873833	+	867.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	-12034.0	NM_001033419	330483.0	Mm.260192	NM_001033419	ENSMUSG00000014686	Ceacam16	Gm769	carcinoembryonic antigen-related cell adhesion molecule 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-87860284-4	chr10	87859798	87860798	+	867.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111276)	promoter-TSS (NM_001111276)	-813.0	NM_001111274	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-45051313-4	chr10	45050795	45051795	+	867.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15919.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171221053-4	chr1	171220576	171221576	+	867.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305585)	promoter-TSS (NM_001305585)	-488.0	NM_001305585	11807.0	Mm.389209	NM_013474	ENSMUSG00000005681	Apoa2	Alp-2|Apo-AII|ApoA-II|ApoAII|Apoa-2|Hdl-1	apolipoprotein A-II	protein-coding	6.0	10.5	2.5	0.0	7.0	2.0
Merged-chr7-31085306-3	chr7	31084805	31085805	+	867.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8608.0	NM_008557	17178.0	Mm.263847	NM_008557	ENSMUSG00000057092	Fxyd3	Mat8	FXYD domain-containing ion transport regulator 3	protein-coding	0.0	1.0	4.5	6.0	8.5	2.5
Merged-chr11-75534511-3	chr11	75533972	75534972	+	867.714294	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 2 of 13)	intron (NM_001199284, intron 2 of 13)	2360.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34047499-6	chr17	34046873	34047873	+	867.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317722, intron 7 of 64)	intron (NM_001317722, intron 7 of 64)	8235.0	NM_001317722	12815.0	Mm.20230	NM_009926	ENSMUSG00000024330	Col11a2	-	collagen, type XI, alpha 2	protein-coding	20.5	18.0	21.0	5.5	11.0	13.0
Merged-chr17-65786418-4	chr17	65785920	65786920	+	867.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152099, intron 2 of 20)	intron (NR_152099, intron 2 of 20)	3065.0	NR_104465	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	28.5	29.5	12.0	11.5	40.5	20.5
Merged-chr13-99191199-4	chr13	99190702	99191702	+	867.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	6379.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-102717678-4	chr9	102717209	102718209	+	867.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019764)	promoter-TSS (NM_019764)	-95.0	NM_019764	56332.0	Mm.21145	NM_019764	ENSMUSG00000032531	Amotl2	AW549739|C79691|Lccp|MASCOT|mKIAA0989	angiomotin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr2-153586736-4	chr2	153586236	153587236	+	867.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46045.0	NM_001195390	99311.0	Mm.294478	NM_133850	ENSMUSG00000056941	Commd7	2310010I22Rik|AW060956|mU3	COMM domain containing 7	protein-coding	1.0	0.5	0.0	0.0	0.0	4.0
Merged-chr12-44919831-4	chr12	44919328	44920328	+	867.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144552, intron 2 of 5)	intron (NM_144552, intron 2 of 5)	154655.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	0.0	1.5	0.0	0.0	1.5	0.0
Merged-chr7-6475690-3	chr7	6475161	6476161	+	867.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_146916)	TTS (NM_146916)	1549.0	NM_146916	258918.0	Mm.377748	NM_146916	ENSMUSG00000054938	Olfr1346	MOR103-6	olfactory receptor 1346	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99467454-3	chr7	99466961	99467961	+	867.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_028145, intron 1 of 6)	intron (NM_028145, intron 1 of 6)	1457.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	0.0	2.0	2.0	0.0	0.0	0.0
Merged-chr17-69223320-4	chr17	69222828	69223828	+	867.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	53878.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84959123-2	chr12	84958623	84959623	+	867.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_178065, intron 1 of 19)	intron (NM_178065, intron 1 of 19)	11763.0	NM_178065	68497.0	Mm.24446	NM_178065	ENSMUSG00000042350	Arel1	1110018G07Rik|AI649076|AW610792|Kiaa0317|mKIAA0317	apoptosis resistant E3 ubiquitin protein ligase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132328593-3	chr1	132328089	132329089	+	867.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195025, intron 5 of 7)	intron (NM_001195025, intron 5 of 7)	12464.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-15799902-3	chr1	15799590	15800590	+	867.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5556.0	NM_009352	21749.0	Mm.4306	NM_009352	ENSMUSG00000025925	Terf1	Pin2|Trbf1|Trf1	telomeric repeat binding factor 1	protein-coding	3.5	2.5	7.0	10.0	11.5	11.0
Merged-chr5-28038440-3	chr5	28037917	28038917	+	867.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32995.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124996768-4	chr6	124996277	124997277	+	867.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175696)	promoter-TSS (NM_175696)	57.0	NM_175696	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44483633-3	chr13	44483141	44484141	+	867.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	43914.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	16.5	26.5	21.0	2.0	11.0	17.5
Merged-chr15-12377024-3	chr15	12376554	12377554	+	867.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081064, intron 18 of 23)	intron (NM_001081064, intron 18 of 23)	55558.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62190942-1	chr10	62190442	62191442	+	867.6666869999999	f0_balb.idr	intron (NM_197996, intron 5 of 7)	intron (NM_197996, intron 5 of 7)	3285.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24118467-3	chr5	24117969	24118969	+	867.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161800, intron 1 of 9)	intron (NM_001161800, intron 1 of 9)	17879.0	NM_001161800	52323.0	Mm.273768	NM_026448	ENSMUSG00000028986	Klhl7	2700038B03Rik|D5Ertd363e|SBBI26	kelch-like 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84823863-3	chr8	84823364	84824364	+	867.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033145, intron 1 of 1)	intron (NR_033145, intron 1 of 1)	-1041.0	NM_201227	23863.0	Mm.304252	NM_201227	ENSMUSG00000053226	Dand5	Cerl-2|Cerl2|Cerr2|Dte|GREM3|coco	DAN domain family member 5, BMP antagonist	protein-coding	1.0	5.5	2.0	12.5	8.5	4.5
Merged-chr13-56172054-3	chr13	56171583	56172583	+	867.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6802.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	0.0	6.5	0.0	1.0	4.0	1.0
Merged-chr10-127529169-2	chr10	127528669	127529669	+	867.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_183297, intron 1 of 1)	intron (NM_183297, intron 1 of 1)	5390.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30560615-2	chr7	30560115	30561115	+	867.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290569)	promoter-TSS (NM_001290569)	-969.0	NM_001290569	75660.0	Mm.379242	NM_029377	ENSMUSG00000036845	Lin37	1810054G18Rik	lin-37 homolog (C. elegans)	protein-coding	5.5	12.5	8.5	3.5	14.5	4.0
Merged-chr13-43770308-2	chr13	43769808	43770808	+	867.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-14804.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-13291759-3	chr1	13291202	13292202	+	867.6555789999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	80727.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0.0	5.0	5.0	7.0	6.0	10.5
Merged-chr10-77891189-4	chr10	77890679	77891679	+	867.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2241.0	NR_015547	75188.0	Mm.348012	NM_029200	ENSMUSG00000096573	1700009J07Rik	4930535B06Rik	RIKEN cDNA 1700009J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88151011-3	chr3	88150537	88151537	+	867.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	8665.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-42910223-4	chr16	42909755	42910755	+	867.6375119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285805, intron 1 of 10)	intron (NM_001285805, intron 1 of 10)	1815.0	NR_040402	100503040.0	Mm.490721	NR_040402		Gm19522	-	predicted gene, 19522	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24416550-4	chr13	24416048	24417048	+	867.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007717, intron 1 of 15)	intron (NM_007717, intron 1 of 15)	1426.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28987886-2	chr17	28987380	28988380	+	867.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357173, intron 5 of 13)	B2_Mm2|SINE|B2	20115.0	NM_134115	106504.0	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	0.0	0.0	4.0	0.0	0.0	0.0
Merged-chr13-91809634-4	chr13	91809158	91810158	+	867.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1962.0	NM_145453	69085.0	Mm.52356	NM_145453	ENSMUSG00000021621	Zcchc9	1810019C21Rik	zinc finger, CCHC domain containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-64991486-6	chr18	64990963	64991963	+	867.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	-32064.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.0	0.0	3.5	0.0	0.0	0.0
Merged-chr9-44090133-2	chr9	44089635	44090635	+	867.625	f1_balb.idr|f1_c57bl6.idr	exon (NM_016808, exon 4 of 13)	exon (NM_016808, exon 4 of 13)	5215.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	1.0	33.0	19.0	6.0	35.0	17.5
Merged-chr5-142936486-4	chr5	142935991	142936991	+	867.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23864.0	NM_007984	14086.0	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30873287-4	chr7	30872795	30873795	+	867.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009845, exon 5 of 14)	exon (NM_009845, exon 5 of 14)	5733.0	NM_009845	12483.0	Mm.260994	NM_009845	ENSMUSG00000030577	Cd22	A530093D23|Lyb-8|Lyb8	CD22 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-177713825-4	chr1	177713325	177714325	+	867.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-15989.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-38503163-4	chr5	38502660	38503660	+	867.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1008.0	NM_145559	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	0.0	16.5	23.5	4.5	0.5	5.5
Merged-chr11-69120326-3	chr11	69119820	69120820	+	867.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033041)	promoter-TSS (NM_033041)	-133.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	24.5	20.0	13.0	6.5	8.5	9.5
Merged-chr17-34346730-5	chr17	34346213	34347213	+	867.6000369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2068.0	NM_010381	100504404.0	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	29.0	137.0	54.0	113.0	449.5	206.5
Merged-chr2-167694283-19	chr2	167693963	167694963	+	867.5912480000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015500, intron 1 of 1)	intron (NR_015500, intron 1 of 1)	3286.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36940538-4	chr1	36940038	36941038	+	867.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1011.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20489908-2	chr13	20489408	20490408	+	867.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_198093, intron 1 of 6)	intron (NM_198093, intron 1 of 6)	16918.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13560175-4	chr9	13559686	13560686	+	867.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59803.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	5.0	7.0	0.0	2.5	0.0	4.5
Merged-chr15-51955205-4	chr15	51954716	51955716	+	867.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36544.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42157903-3	chr19	42157366	42158366	+	867.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10477.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90135604-3	chr7	90135139	90136139	+	867.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	5426.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	17.5	52.5	36.5	25.0	47.5	34.0
Merged-chr12-42181838-3	chr12	42181336	42182336	+	867.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	-695779.0	NM_010733	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-112448698-3	chr2	112448195	112449195	+	867.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6330.0	NM_133749	73024.0	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6048083-3	chr2	6047581	6048581	+	867.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081132, intron 19 of 21)	intron (NM_001081132, intron 19 of 21)	82104.0	NM_144883	227545.0	Mm.133542	NM_144883	ENSMUSG00000045319	Proser2	5430407P10Rik|AU067770	proline and serine rich 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181548419-4	chr2	181547900	181548900	+	867.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271584, intron 4 of 5)	intron (NM_001271584, intron 4 of 5)	27915.0	NM_001271584	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94574801-4	chr16	94574309	94575309	+	867.537476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	3902.0	NM_001113389	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27542604-6	chr7	27542109	27543109	+	867.535339	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317355, intron 3 of 13)	intron (NM_001317355, intron 3 of 13)	10609.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16261124-4	chr7	16260542	16261542	+	867.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1502.0	NM_007577	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	22.0	66.5	38.5	14.0	67.5	38.0
Merged-chr7-6287465-2	chr7	6286965	6287965	+	867.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024928, intron 1 of 4)	intron (NM_001024928, intron 1 of 4)	885.0	NM_001024928	384763.0	Mm.276279	NM_001024928	ENSMUSG00000054893	Zfp667	A830025F02Rik|Mip1|ZNF667	zinc finger protein 667	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75323326-2	chr10	75322826	75323826	+	867.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331095, intron 1 of 2)	intron (NM_001331095, intron 1 of 2)	-1532.0	NM_001331096	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3472647-2	chr11	3472147	3473147	+	867.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_028317, intron 2 of 3)	intron (NR_028317, intron 2 of 3)	-9657.0	NR_037301	100499518.0		NR_037301	ENSMUSG00000095323	Mir3470a	mmu-mir-3470a	microRNA 3470a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116330110-2	chr7	116329610	116330610	+	867.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4080.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66968381-2	chr15	66967881	66968881	+	867.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008681, intron 1 of 15)	intron (NM_008681, intron 1 of 15)	1260.0	NM_008681	17988.0	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	0.0	0.0	0.0	1.0	1.0	0.0
Merged-chr10-44004452-4	chr10	44003953	44004953	+	867.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172393, exon 1 of 20)	5' UTR (NM_172393, exon 1 of 20)	393.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-68862270-4	chr2	68861865	68862865	+	867.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	intron (NM_001347161, intron 1 of 10)	924.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-33377791-2	chr5	33377291	33378291	+	867.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081101)	promoter-TSS (NM_001081101)	-905.0	NR_153108	71101.0	Mm.132178	NM_027674	ENSMUSG00000037355	Uvssa	4933407H18Rik|D330017J19Rik|Kiaa1530|mKIAA1530	UV stimulated scaffold protein A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-85977507-2	chr18	85977007	85978007	+	867.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-417445.0	NM_001360910	246317.0	Mm.329578	NM_144946	ENSMUSG00000050321	Neto1	AI851453|Btcl1|C130005O10Rik	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding	8.0	0.0	0.0	0.0	3.0	0.0
Merged-chr2-71004708-2	chr2	71004208	71005208	+	867.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 2 of 9)	Lx8|LINE|L1	13666.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129616186-6	chr6	129615693	129616693	+	867.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083322, intron 5 of 7)	intron (NM_001083322, intron 5 of 7)	6490.0	NM_033078	27007.0	Mm.8217	NM_033078	ENSMUSG00000030149	Klrk1	D6H12S2489E|NKG2-D|Nkg2d	killer cell lectin-like receptor subfamily K, member 1	protein-coding	39.0	72.5	52.5	26.0	97.0	73.5
Merged-chr8-121580201-4	chr8	121579702	121580702	+	867.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-1396.0	NM_133765	76454.0	Mm.24829	NM_133765	ENSMUSG00000052934	Fbxo31	1110003O08Rik|2310046N15Rik|Fbx14|Fbxo14	F-box protein 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-41374791-3	chr3	41374284	41375284	+	867.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	118415.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-43367995-3	chr11	43367499	43368499	+	867.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	6462.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85591980-2	chr12	85591480	85592480	+	867.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-7125.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-121416729-2	chr2	121416219	121417219	+	867.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007952, intron 1 of 12)	intron (NM_007952, intron 1 of 12)	2817.0	NM_007952	14827.0	Mm.263177	NM_007952	ENSMUSG00000027248	Pdia3	58kDa|ERp57|ERp60|ERp61|Erp|Grp58|PDI|PDI-Q2|PI-PLC|PLC[a]|Plca	protein disulfide isomerase associated 3	protein-coding	6.0	6.5	7.5	3.5	10.0	11.0
Merged-chr8-108767254-4	chr8	108766757	108767757	+	867.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	52613.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	3.0	7.0	2.0	0.5	4.0	7.0
Merged-chr15-86206127-2	chr15	86205627	86206627	+	867.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-8332.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-83939514-3	chr12	83939000	83940000	+	867.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11108.0	NM_023633	71952.0	Mm.251483	NM_023633	ENSMUSG00000046791	Riox1	2410016O06Rik|MAPJD|NO66	ribosomal oxygenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-54774364-4	chr1	54773857	54774857	+	867.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 4 of 27)	intron (NM_001081433, intron 4 of 27)	152030.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0.0	4.5	6.0	2.0	7.0	1.0
Merged-chr16-33914256-4	chr16	33913693	33914693	+	867.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 9 of 14)	intron (NM_001145884, intron 9 of 14)	52845.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99157866-2	chr7	99157366	99158366	+	867.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026384, intron 6 of 7)	tRNA-Ala-GCA|tRNA|tRNA	-16722.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0.0	2.5	0.0	0.0	0.5	0.0
Merged-chr3-152474783-4	chr3	152474269	152475269	+	867.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081277, intron 12 of 13)	intron (NM_001081277, intron 12 of 13)	78085.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106106413-4	chr8	106105902	106106902	+	867.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010901, intron 8 of 9)	intron (NM_010901, intron 8 of 9)	-28998.0	NR_040345	69771.0	Mm.393274	NR_040344		1810019D21Rik	-	RIKEN cDNA 1810019D21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67348750-4	chr17	67348235	67349235	+	867.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	MER5A|DNA|hAT-Charlie	5724.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	16.5	37.5	32.5	29.0	44.5	27.0
Merged-chr10-56378058-3	chr10	56377587	56378587	+	867.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010288, intron 1 of 1)	intron (NM_010288, intron 1 of 1)	787.0	NM_010288	14609.0	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146676422-3	chr6	146675923	146676923	+	867.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19205.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	16.5	63.0	50.0	0.0	22.5	23.5
Merged-chr15-97830946-3	chr15	97830486	97831486	+	867.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204276, intron 1 of 25)	CpG	781.0	NM_019572	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45610444-4	chr17	45609910	45610910	+	867.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-8308.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10306370-2	chr19	10305870	10306870	+	867.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1493.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	5.0	39.0	10.5	5.0	36.5	11.5
Merged-chr12-85649128-2	chr12	85648628	85649628	+	867.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37592.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21173213-2	chr13	21172713	21173713	+	867.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6718.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36168251-2	chr17	36167751	36168751	+	867.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081032, intron 1 of 7)	CpG-6350	286.0	NM_001081032	667977.0	Mm.441651	NM_001081032	ENSMUSG00000073402	Gm8909	EG667977|H2-Tw5l|H2-gs17	predicted gene 8909	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-103107819-3	chr4	103107366	103108366	+	867.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146254, intron 1 of 16)	B3|SINE|B2	6433.0	NM_146254	242584.0	Mm.374877	NM_146254	ENSMUSG00000035126	Wdr78	BC028975	WD repeat domain 78	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-115643298-4	chr4	115642836	115643836	+	867.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007823, intron 1 of 11)	intron (NM_007823, intron 1 of 11)	4369.0	NM_007823	13120.0	Mm.1840	NM_007823	ENSMUSG00000028713	Cyp4b1	-	cytochrome P450, family 4, subfamily b, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100169419-4	chr12	100168903	100169903	+	867.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-9750.0	NM_183155	217827.0	Mm.224076	NM_183155	ENSMUSG00000021179	Nrde2	6720454P05Rik	nrde-2 necessary for RNA interference, domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95325807-3	chr13	95325281	95326281	+	867.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302539)	promoter-TSS (NM_001302539)	956.0	NM_028106	72114.0	Mm.3774	NM_028106	ENSMUSG00000041995	Zbed3	0610037K01Rik|2610005H11Rik|AU018975|AU024588	zinc finger, BED type containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-167212503-3	chr1	167211999	167212999	+	867.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72628.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-76151151-3	chr18	76150613	76151613	+	867.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19439.0	NR_105776	102465184.0		NR_105776	ENSMUSG00000098276	Mir6358	Gm27830|mmu-mir-6358	microRNA 6358	ncRNA	4.5	15.5	0.0	4.0	3.0	0.0
Merged-chr11-45754047-4	chr11	45753531	45754531	+	867.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54052.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr10-98716343-3	chr10	98715837	98716837	+	867.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-198305.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-15889061-3	chr16	15888578	15889578	+	867.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_146068)	TTS (NM_146068)	1792.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-48242607-3	chr4	48242106	48243106	+	867.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355184, intron 2 of 10)	MER5A|DNA|hAT-Charlie	-29391.0	NR_035484	100316708.0		NR_035484	ENSMUSG00000087844	Mir1958	mmu-mir-1958	microRNA 1958	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91852439-3	chr16	91851908	91852908	+	867.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 21 of 28)	intron (NM_001110275, intron 21 of 28)	79222.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102314302-3	chr7	102313800	102314800	+	867.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009287, intron 1 of 11)	intron (NM_009287, intron 1 of 11)	46476.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	8.0	5.5	10.5	0.0	15.5	6.5
Merged-chr6-53286543-3	chr6	53286032	53287032	+	867.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001327821)	promoter-TSS (NM_001327821)	-771.0	NM_001327821	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.0	2.5	0.5	1.5	0.0	0.0
Merged-chr5-34347417-3	chr5	34346973	34347973	+	867.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304270, intron 3 of 7)	intron (NM_001304270, intron 3 of 7)	10541.0	NM_001304270	19822.0	Mm.21281	NM_011278	ENSMUSG00000029110	Rnf4	AU018689|Gtrgeo8|SNURF	ring finger protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-140822062-2	chr7	140821562	140822562	+	867.3333130000001	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001001180, exon 1 of 3)	5' UTR (NM_001001180, exon 1 of 3)	116.0	NM_001001180	407812.0	Mm.359154	NM_001001180	ENSMUSG00000060314	Zfp941	-	zinc finger protein 941	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45014808-4	chr19	45014300	45015300	+	867.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145503)	promoter-TSS (NM_145503)	-376.0	NM_145503	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27397784-4	chr14	27397265	27398265	+	867.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 9 of 10)	intron (NM_027871, intron 9 of 10)	-31069.0	NM_028945	218850.0	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	6.0	1.5	3.0	2.5	1.0	0.0
Merged-chr6-143361522-4	chr6	143361002	143362002	+	867.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	115614.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83693989-4	chr6	83693481	83694481	+	867.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_002871, intron 5 of 5)	intron (NR_002871, intron 5 of 5)	-16124.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-178058411-3	chr2	178057926	178058926	+	867.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19999.0	NM_001162922	353208.0	Mm.381194	NM_001162922	ENSMUSG00000078861	Zfp931	2810021G02Rik	zinc finger protein 931	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-73637931-3	chr5	73637458	73638458	+	867.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011890, intron 5 of 5)	intron (NM_011890, intron 5 of 5)	-5537.0	NM_153568	231296.0	Mm.168948	NM_153568	ENSMUSG00000067206	Lrrc66	-	leucine rich repeat containing 66	protein-coding	0.0	1.5	0.0	3.0	0.0	0.5
Merged-chr10-93489287-2	chr10	93488751	93489751	+	867.2666630000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_010401, exon 1 of 20)	exon (NM_010401, exon 1 of 20)	483.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	7.5	26.5	32.5	39.5	113.5	88.0
Merged-chr5-137305942-4	chr5	137305447	137306447	+	867.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359602, intron 2 of 19)	intron (NM_001359602, intron 2 of 19)	1727.0	NM_031405	83701.0	Mm.387734	NM_031405	ENSMUSG00000037364	Srrt	2810019G02Rik|ASR2A|ASR2B|ASR2C|ASR2D|Ars2|Asr2	serrate RNA effector molecule homolog (Arabidopsis)	protein-coding	13.5	34.0	23.0	11.0	42.0	20.5
Merged-chr7-139979600-4	chr7	139979096	139980096	+	867.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347613)	promoter-TSS (NM_001347613)	-841.0	NM_001347613	381933.0	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	1.5	2.0	2.0	2.5	1.0	0.0
Merged-chr11-69689830-4	chr11	69689358	69690358	+	867.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011614, intron 5 of 6)	intron (NM_011614, intron 5 of 6)	-4304.0	NM_023517	69583.0	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121310954-4	chr10	121310442	121311442	+	867.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_029057, exon 1 of 12)	5' UTR (NM_029057, exon 1 of 12)	454.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	0.0	0.0	0.0	1.5	3.0	0.0
Merged-chr11-80169347-3	chr11	80168851	80169851	+	867.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 6 of 10)	intron (NM_172133, intron 6 of 10)	-14521.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-39232894-3	chr15	39232395	39233395	+	867.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256383, intron 1 of 25)	MERV1_I-int|LTR|ERV1	34609.0	NM_053271	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28807867-3	chr7	28807342	28808342	+	867.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3048.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-100999155-3	chr3	100998663	100999663	+	867.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167906, intron 8 of 8)	intron (NM_001167906, intron 8 of 8)	-29500.0	NM_001013026	74044.0	Mm.270961	NM_001013026	ENSMUSG00000033222	Ttf2	4632434F22Rik|8030447N19|AV218430	transcription termination factor, RNA polymerase II	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr17-26540047-4	chr17	26539553	26540553	+	867.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB1|LINE|L1	-21459.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	3.5	12.5	0.5	10.5	7.0	6.0
Merged-chr3-130761147-4	chr3	130760591	130761591	+	867.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30693.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23753340-3	chr11	23752842	23753842	+	867.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009044, intron 3 of 9)	intron (NM_009044, intron 3 of 9)	17628.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39911669-3	chr1	39911197	39912197	+	867.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 2 of 29)	intron (NM_001252202, intron 2 of 29)	10784.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-53412369-3	chr10	53411867	53412867	+	867.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152767, intron 1 of 2)	Lx9|LINE|L1	2485.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30878545-2	chr7	30878045	30879045	+	867.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001043317, intron 3 of 15)	intron (NM_001043317, intron 3 of 15)	483.0	NM_009845	12483.0	Mm.260994	NM_009845	ENSMUSG00000030577	Cd22	A530093D23|Lyb-8|Lyb8	CD22 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37030794-2	chr1	37030294	37031294	+	867.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91267.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151718078-2	chr1	151717578	151718578	+	867.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_022018, exon 14 of 14)	exon (NM_022018, exon 14 of 14)	36649.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-46993279-4	chr7	46992742	46993742	+	867.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175318, exon 6 of 6)	3' UTR (NM_175318, exon 6 of 6)	15172.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-122230911-4	chr9	122230456	122231456	+	867.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271873, intron 11 of 12)	intron (NM_001271873, intron 11 of 12)	43072.0	NR_106185	102465896.0		NR_106185	ENSMUSG00000098922	Mir8106	Gm27594|mmu-mir-8106	microRNA 8106	ncRNA	1.5	12.5	18.0	2.5	10.0	9.0
Merged-chr1-178309047-3	chr1	178308528	178309528	+	867.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-10125.0	NM_025511	66359.0	Mm.489720	NM_025511	ENSMUSG00000026500	Cox20	2310005N03Rik|Fam36a	COX20 Cox2 chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122112424-3	chr8	122111928	122112928	+	867.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134404.0	NR_106096	102466915.0		NR_106096	ENSMUSG00000099140	Mir7237	Gm27482|mmu-mir-7237	microRNA 7237	ncRNA	4.5	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70944777-3	chr11	70944271	70945271	+	867.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083331, intron 12 of 16)	intron (NM_001083331, intron 12 of 16)	25202.0	NM_172394	19069.0	Mm.288962	NM_172394	ENSMUSG00000040667	Nup88	Nup84|Prei2	nucleoporin 88	protein-coding	3.5	20.0	11.0	6.5	10.0	6.5
Merged-chr15-97578298-2	chr15	97577798	97578798	+	867.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	127524.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54983285-4	chr18	54982789	54983789	+	867.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	6891.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4080423-4	chr11	4079916	4080916	+	867.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	15015.0	NM_026443	67900.0	Mm.41719	NM_026443	ENSMUSG00000004748	Mtfp1	1700020C11Rik|2610507A21Rik|AV005788|Mtp18	mitochondrial fission process 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58714580-3	chr1	58714031	58715031	+	867.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_149256)	TTS (NR_149256)	1245.0	NM_001355056	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-4967399-4	chr6	4966901	4967901	+	867.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	64081.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128753618-4	chr2	128753096	128754096	+	867.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 6 of 18)	ID_B1|SINE|B4	54681.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	9.5	31.0	22.5	4.5	20.0	12.0
Merged-chr11-110967354-3	chr11	110966798	110967798	+	867.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252207)	promoter-TSS (NM_001252207)	-735.0	NM_010604	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	24.0	32.0	58.0	30.5	83.0	83.5
Merged-chr6-38610351-3	chr6	38609853	38610853	+	867.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_138680)	TTS (NM_138680)	26886.0	NM_001033171	74253.0	Mm.121859	NM_001033171	ENSMUSG00000071537	Klrg2	2310020F24Rik	killer cell lectin-like receptor subfamily G, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-40739175-3	chr3	40738685	40739685	+	867.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6428.0	NM_011020	18415.0	Mm.39330	NM_011020	ENSMUSG00000025757	Hspa4l	94kDa|AI461691|APG-1|Osp94	heat shock protein 4 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121000736-3	chr14	121000198	121001198	+	867.0499880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-34876.0	NM_134082	223254.0	Mm.223980	NM_134082	ENSMUSG00000025555	Farp1	AW228844|BC030329|Cdep	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	protein-coding	4.5	14.5	3.0	1.5	6.5	6.5
Merged-chr3-10249582-4	chr3	10249078	10250078	+	867.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357159, intron 3 of 4)	IAPEY4_LTR|LTR|ERVK	4647.0	NM_001357161	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135689148-4	chr3	135688622	135689622	+	867.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 1 of 24)	intron (NM_008689, intron 1 of 24)	2425.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120857199-4	chr4	120856681	120857681	+	867.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182929, intron 1 of 7)	intron (NM_182929, intron 1 of 7)	2382.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	21.5	1.0	14.5	14.5	4.0	11.5
Merged-chr11-75582815-2	chr11	75582315	75583315	+	867.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	polypurine|Low_complexity|Low_complexity	-5264.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	0.0	0.0	0.0	2.0	1.0	0.0
Merged-chr3-41444540-3	chr3	41444044	41445044	+	867.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48655.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160602629-2	chr2	160602129	160603129	+	867.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43268.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70759714-2	chr8	70759214	70760214	+	867.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183170, intron 2 of 4)	MTE2a|LTR|ERVL-MaLR	1207.0	NM_183170	234384.0	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	0.0	6.0	6.5	5.0	30.0	12.0
Merged-chr10-54117542-2	chr10	54117042	54118042	+	867.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41620.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43726634-2	chr4	43725992	43726992	+	867.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_027511)	promoter-TSS (NM_027511)	-706.0	NM_027511	100039781.0	Mm.18796	NM_027511	ENSMUSG00000071001	Hrct1	3830408D24Rik	histidine rich carboxyl terminus 1	protein-coding	3.5	9.5	2.5	4.5	4.5	12.0
Merged-chr11-116282437-3	chr11	116281944	116282944	+	867.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010254, intron 1 of 1)	intron (NM_010254, intron 1 of 1)	1505.0	NM_010254	14428.0	Mm.57149	NM_010254	ENSMUSG00000020793	Galr2	mGalR	galanin receptor 2	protein-coding	9.5	12.5	5.0	4.0	6.0	0.5
Merged-chr10-118803905-2	chr10	118803405	118804405	+	867.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64998.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-31633310-2	chr18	31632810	31633810	+	867.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1058.0	NM_001357554	269003.0	Mm.194538	NM_172965	ENSMUSG00000024260	Sap130	2610304F09Rik|6720406D06	Sin3A associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81140881-4	chr10	81140460	81141460	+	867.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010731, intron 1 of 2)	intron (NM_010731, intron 1 of 2)	4689.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10438214-4	chr16	10437717	10438717	+	867.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013778, intron 1 of 6)	intron (NM_001013778, intron 1 of 6)	9145.0	NM_001359069	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45061431-2	chr7	45060931	45061931	+	867.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025533)	promoter-TSS (NM_025533)	221.0	NM_022999	65116.0	Mm.379098	NM_022999	ENSMUSG00000007837	Prrg2	1600014G02Rik|2510041M06Rik|N4WBP1	proline-rich Gla (G-carboxyglutamic acid) polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr10-105840328-2	chr10	105839828	105840828	+	867.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359640, intron 1 of 12)	intron (NM_001359640, intron 1 of 12)	1052.0	NM_001359642	216292.0	Mm.250875	NM_207522	ENSMUSG00000036009	Mettl25	-	methyltransferase like 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-179477295-2	chr1	179476795	179477795	+	867.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027188, intron 1 of 11)	intron (NM_027188, intron 1 of 11)	40746.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126745739-2	chr4	126745239	126746239	+	867.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355412, intron 6 of 6)	intron (NM_001355412, intron 6 of 6)	6828.0	NM_001355413	26562.0	Mm.206206	NM_011986	ENSMUSG00000028833	Ncdn	AU042419|MMS10-AE|Ms10ae|mKIAA0607|norbin	neurochondrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22097746-2	chr16	22097246	22098246	+	867.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	65553.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120797313-2	chr11	120796813	120797813	+	867.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026824)	promoter-TSS (NM_026824)	-918.0	NM_026824	68730.0	Mm.180622	NM_026824	ENSMUSG00000025155	Dus1l	1110032N12Rik	dihydrouridine synthase 1-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70862604-3	chr9	70862068	70863068	+	867.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	72240.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69080363-2	chr11	69079863	69080863	+	867.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6937.0	NR_028566	100216530.0	Mm.453052	NR_028566	ENSMUSG00000064899	Snord118	MBI-34	small nucleolar RNA, C/D box 118	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-146454602-2	chr4	146454102	146455102	+	867.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085522, intron 1 of 3)	intron (NM_001085522, intron 1 of 3)	5572.0	NM_001085522	433791.0	Mm.276881	NM_001085522	ENSMUSG00000070605	Zfp992	Gm13251	zinc finger protein 992	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-28412232-2	chr13	28411732	28412732	+	867.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	269748.0	NM_023746	28078.0	Mm.155058	NM_023746	ENSMUSG00000017064	Prl5a1	1600013P04Rik|D13Wsu14e|Ghd24|PLP-L|Prlpl	prolactin family 5, subfamily a, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45437551-2	chr7	45437051	45438051	+	867.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030678, intron 2 of 15)	intron (NM_030678, intron 2 of 15)	2712.0	NM_030678	14936.0	Mm.275654	NM_030678	ENSMUSG00000003865	Gys1	Gys3|MGS	glycogen synthase 1, muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-16360182-1	chr6	16359682	16360682	+	867.0	f0_c57.idr	Intergenic	IAPLTR2_Mm|LTR|ERVK	538259.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91591513-2	chr12	91591013	91592013	+	867.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1026.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-139727368-2	chr2	139726868	139727868	+	867.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276489, intron 1 of 5)	intron (NM_001276489, intron 1 of 5)	49190.0	NM_001276489	319909.0	Mm.41113	NM_001126490	ENSMUSG00000074766	Ism1	5430433G21Rik|Ism	isthmin 1, angiogenesis inhibitor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-99205809-2	chr6	99205309	99206309	+	867.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	60706.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-68158737-1	chr15	68158237	68159237	+	867.0	f1_balb.idr	intron (NM_198644, intron 10 of 15)	intron (NM_198644, intron 10 of 15)	100119.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	1.5	8.0	0.0	0.0	0.0	1.0
Merged-chr13-49182754-2	chr13	49182254	49183254	+	867.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4793.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-125318701-3	chr10	125318199	125319199	+	867.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 1 of 5)	intron (NM_001358496, intron 1 of 5)	-9883.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-33160487-2	chr14	33159987	33160987	+	867.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146022, intron 2 of 58)	intron (NM_001146022, intron 2 of 58)	24579.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-23143673-2	chr19	23143173	23144173	+	867.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010638, intron 1 of 1)	intron (NM_010638, intron 1 of 1)	2447.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52937903-2	chr2	52937403	52938403	+	867.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	80035.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53153797-2	chr4	53153297	53154297	+	867.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	6098.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-28262797-3	chr6	28262292	28263292	+	867.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1191.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103514825-2	chr15	103514325	103515325	+	867.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285890)	promoter-TSS (NM_001285890)	-152.0	NM_001285890	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119837616-3	chr8	119837123	119838123	+	867.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	2956.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100501437-2	chr5	100500937	100501937	+	867.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172714)	promoter-TSS (NM_172714)	-798.0	NM_001359914	231506.0	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24029267-2	chr5	24028767	24029767	+	867.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053090, intron 1 of 10)	intron (NM_053090, intron 1 of 10)	1045.0	NM_001310471	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	0.0	15.5	3.5	0.5	13.5	6.0
Merged-chr11-93941068-3	chr11	93940560	93941560	+	867.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134012, intron 15 of 15)	intron (NM_134012, intron 15 of 15)	14723.0	NM_001077529	18103.0	Mm.1260	NM_008705	ENSMUSG00000020857	Nme2	NM23-H2|NM23B|nm23-M2	NME/NM23 nucleoside diphosphate kinase 2	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr15-85735427-3	chr15	85734940	85735940	+	867.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113418)	promoter-TSS (NM_001113418)	-124.0	NM_001113418	19013.0	Mm.212789	NM_011144	ENSMUSG00000022383	Ppara	4933429D07Rik|AW742785|Nr1c1|PPAR-alpha|PPARalpha|Ppar	peroxisome proliferator activated receptor alpha	protein-coding	0.0	0.0	2.5	0.0	0.0	0.0
Merged-chr16-32610983-2	chr16	32610483	32611483	+	867.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357298, intron 1 of 18)	intron (NM_001357298, intron 1 of 18)	1861.0	NM_001357298	22042.0	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-101192964-3	chr2	101192465	101193465	+	867.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-431783.0	NM_009020	19374.0	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120562411-3	chr2	120561901	120562901	+	867.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011743, intron 1 of 21)	B2_Mm1t|SINE|B2	1458.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	11.0	41.5	27.0	2.0	14.5	7.0
Merged-chr14-77537165-4	chr14	77536589	77537589	+	867.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253759, intron 7 of 19)	intron (NM_001253759, intron 7 of 19)	-30221.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	3.0	16.5	4.0	13.0	10.0	8.0
Merged-chr11-58958839-2	chr11	58958339	58959339	+	867.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2872.0	NM_001318003	382523.0		NM_001318003		Gm12260	H3t	predicted gene 12260	protein-coding	20.0	91.5	65.5	6.5	29.0	22.0
Merged-chr6-108717972-2	chr6	108717472	108718472	+	867.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57038.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0.0	3.0	0.0	0.0	0.0	4.5
Merged-chr1-181950913-4	chr1	181950409	181951409	+	866.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010135, intron 3 of 14)	intron (NM_010135, intron 3 of 14)	69071.0	NM_010135	13800.0	Mm.87759	NM_008680	ENSMUSG00000022995	Enah	Mena|NDPP-1|Ndpp1|WBP8	ENAH actin regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-131918803-4	chr4	131918241	131919241	+	866.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102394, intron 1 of 2)	intron (NR_102394, intron 1 of 2)	1288.0	NR_102394	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45546099-4	chr4	45545591	45546591	+	866.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-15263.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	2.0	23.5	17.5	12.0	4.0	3.0
Merged-chr7-98382977-4	chr7	98382428	98383428	+	866.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21600.0	NM_001168539	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr11-106302823-4	chr11	106302310	106303310	+	866.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008117)	promoter-TSS (NM_008117)	-914.0	NM_008117	14599.0	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17645876-4	chr17	17645374	17646374	+	866.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21385.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	1.0	0.0	0.0	1.0	0.0	0.0
Merged-chr9-59482603-4	chr9	59482104	59483104	+	866.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045640)	promoter-TSS (NR_045640)	-863.0	NR_045640	100504377.0	Mm.446631	NR_045640		Gm20199	-	predicted gene, 20199	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118548755-6	chr2	118548252	118549252	+	866.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138313, intron 2 of 4)	intron (NM_138313, intron 2 of 4)	934.0	NM_138313	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	1.5	22.5	6.0	2.5	10.5	6.0
Merged-chr11-50099084-4	chr11	50098581	50099581	+	866.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 7 of 7)	intron (NM_001290750, intron 7 of 7)	29379.0	NR_029769	723845.0		NR_029769	ENSMUSG00000065417	Mir340	Mirn340|mir-340|mmu-mir-340	microRNA 340	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23524818-4	chr13	23524308	23525308	+	866.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6236.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87742277-4	chr6	87741764	87742764	+	866.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159697, intron 2 of 7)	MTD|LTR|ERVL-MaLR	11395.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83081847-4	chr8	83081292	83082292	+	866.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 6 of 6)	MTE2a|LTR|ERVL-MaLR	-83560.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	33.5	77.5	59.0	14.5	32.5	24.5
Merged-chr15-98834328-2	chr15	98833828	98834828	+	866.916626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033276, exon 55 of 55)	3' UTR (NM_001033276, exon 55 of 55)	-2820.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5407397-4	chr19	5407017	5408017	+	866.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027938, intron 1 of 3)	intron (NR_027938, intron 1 of 3)	702.0	NR_027938	74931.0	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	70.0	171.0	151.5	41.5	98.5	87.0
Merged-chr13-92274008-4	chr13	92273507	92274507	+	866.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010829, exon 15 of 24)	exon (NM_010829, exon 15 of 24)	-80776.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115083572-4	chr11	115083084	115084084	+	866.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7847.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-116049832-3	chr12	116049277	116050277	+	866.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019565, intron 1 of 2)	intron (NM_019565, intron 1 of 2)	2053.0	NM_019565	56220.0	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding	4.0	2.0	9.5	8.5	0.0	6.5
Merged-chr5-129959288-3	chr5	129958796	129959796	+	866.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001327, intron 1 of 1)	intron (NM_001001327, intron 1 of 1)	17187.0	NM_027121	69568.0	Mm.288718	NM_027121	ENSMUSG00000066735	Vkorc1l1	2310024K08Rik	vitamin K epoxide reductase complex, subunit 1-like 1	protein-coding	5.0	1.0	10.5	2.0	5.0	13.0
Merged-chr2-154215392-3	chr2	154214889	154215889	+	866.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012392, intron 12 of 15)	intron (NM_001012392, intron 12 of 15)	-8353.0	NM_144890	228802.0	Mm.167411	NM_144890	ENSMUSG00000038572	Bpifb5	Lplunc5	BPI fold containing family B, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47780624-3	chr6	47780136	47781136	+	866.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	23016.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	33.5	54.0	91.5	29.0	56.0	75.5
Merged-chr10-63236024-4	chr10	63235523	63236523	+	866.8875119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-7774.0	NM_030114	67345.0	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-11832999-4	chr18	11832493	11833493	+	866.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045421, intron 1 of 3)	(T)n|Simple_repeat|Simple_repeat	-6281.0	NM_001146287	63955.0	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	2.5	3.5	10.0	0.0	2.5	4.5
Merged-chr16-33668467-4	chr16	33668001	33669001	+	866.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15965.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64919519-4	chr1	64919061	64920061	+	866.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 3 of 7)	intron (NM_001039493, intron 3 of 7)	37263.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-90857092-4	chr8	90856606	90857606	+	866.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	28271.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0.5	21.5	4.0	6.0	10.5	6.0
Merged-chr13-59556775-2	chr13	59556275	59557275	+	866.833374	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001284219, exon 1 of 25)	5' UTR (NM_001284219, exon 1 of 25)	147.0	NM_001284219	67269.0	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75489896-2	chr10	75489396	75490396	+	866.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	27485.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6336272-2	chr15	6335772	6336772	+	866.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	36483.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44199786-3	chr9	44199289	44200289	+	866.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 2 of 15)	intron (NM_007619, intron 2 of 15)	34257.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	7.0	28.5	3.0	11.0	23.5	14.0
Merged-chr15-68066787-4	chr15	68066332	68067332	+	866.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	192024.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33902605-4	chr17	33902122	33903122	+	866.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2513.0	NR_040470	474160.0	Mm.206186	NR_040470	ENSMUSG00000092349	Platr17	-	pluripotency associated transcript 17	ncRNA	11.0	60.5	14.0	4.5	45.0	17.5
Merged-chr9-79816638-3	chr9	79816154	79817154	+	866.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357352, intron 5 of 5)	intron (NM_001357352, intron 5 of 5)	14328.0	NM_001357354	70598.0	Mm.23049	NM_001081243	ENSMUSG00000034898	Filip1	5730485H21Rik|AI843021	filamin A interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45060587-4	chr2	45060067	45061067	+	866.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-37390.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137603435-2	chr4	137602931	137603931	+	866.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355588, intron 1 of 26)	B1F1|SINE|Alu	9259.0	NM_130879	170707.0	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	61.0	119.0	102.5	26.5	49.5	56.5
Merged-chr16-33375633-4	chr16	33375107	33376107	+	866.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5129.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146822316-2	chr5	146821816	146822816	+	866.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10574.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	20.5	30.0	21.5	21.0	36.5	38.5
Merged-chr7-3643631-4	chr7	3643146	3644146	+	866.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1623.0	NM_146176	232791.0	Mm.358731	NM_146176	ENSMUSG00000035632	Cnot3	A930039N10Rik	CCR4-NOT transcription complex, subunit 3	protein-coding	8.0	46.0	31.5	23.0	17.0	23.0
Merged-chr7-16204976-3	chr7	16204475	16205475	+	866.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027883, intron 9 of 16)	intron (NM_027883, intron 9 of 16)	17018.0	NM_001285931	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	7.0	0.0	3.0	0.0	0.0	0.5
Merged-chr10-82985306-9	chr10	82984889	82985889	+	866.796326	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021439)	promoter-TSS (NM_021439)	-108.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	0.0	0.0	0.0	5.0	0.0	4.0
Merged-chr18-70504327-4	chr18	70503810	70504810	+	866.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12476.0	NR_105775	102466152.0		NR_105775	ENSMUSG00000098721	Mir6357	Gm27333|mmu-mir-6357	microRNA 6357	ncRNA	7.5	4.0	11.5	5.5	5.0	9.0
Merged-chr3-116251748-4	chr3	116251247	116252247	+	866.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_022427, exon 2 of 2)	exon (NM_022427, exon 2 of 2)	1737.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46488383-3	chr11	46487880	46488880	+	866.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33449.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr2-173452139-3	chr2	173451711	173452711	+	866.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie5|DNA|hAT-Charlie	-70381.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	5.0	1.0	3.0	6.0	3.5	1.5
Merged-chr10-80260470-3	chr10	80259973	80260973	+	866.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010255, intron 1 of 5)	intron (NM_010255, intron 1 of 5)	539.0	NM_001347119	14431.0	Mm.7329	NM_010255	ENSMUSG00000020150	Gamt	AA571402|Spintz1	guanidinoacetate methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114231998-2	chr11	114231498	114232498	+	866.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33740.0	NR_045930	73536.0	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71603711-2	chr8	71603166	71604166	+	866.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001166213, exon 9 of 15)	exon (NM_001166213, exon 9 of 15)	6020.0	NM_001166213	100037278.0	Mm.482159	NM_001166213	ENSMUSG00000043243	Fam129c	Bcnp1	family with sequence similarity 129, member C	protein-coding	0.0	1.0	12.5	0.5	1.5	0.5
Merged-chr7-100498224-2	chr7	100497724	100498724	+	866.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_011671, exon 5 of 8)	exon (NM_011671, exon 5 of 8)	4866.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	7.0	14.5	3.5	2.5	12.0	8.5
Merged-chr11-48855628-4	chr11	48855116	48856116	+	866.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	15804.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26644077-4	chr2	26643579	26644579	+	866.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3835.0	NR_024068	72091.0	Mm.27103	NR_024068		Snhg7	2610002F03Rik|AI427062	small nucleolar RNA host gene 7	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130003857-2	chr5	130003357	130004357	+	866.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010368)	promoter-TSS (NM_010368)	-808.0	NM_001357027	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	7.5	3.5	3.0	1.5	3.5	2.0
Merged-chr11-99200895-3	chr11	99200381	99201381	+	866.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30136.0	NM_020618	57376.0	Mm.379086	NM_020618	ENSMUSG00000037935	Smarce1	2810417B20Rik|5830412H02Rik|9030408N19Rik|Baf27	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding	2.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6749448-7	chr17	6748899	6749899	+	866.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 6 of 12)	intron (NM_009510, intron 6 of 12)	33381.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41364709-4	chr19	41364199	41365199	+	866.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	20371.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	4.5	1.0	1.5	0.0	5.5	4.0
Merged-chr1-54443808-4	chr1	54443308	54444308	+	866.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4782.0	NM_001033194	98488.0	Mm.25856	NM_001033194	ENSMUSG00000041303	Gtf3c3	TF3C-gamma|TFIIIC102	general transcription factor IIIC, polypeptide 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-115041533-4	chr14	115041019	115042019	+	866.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2152.0	NR_029785	723905.0		NR_029785	ENSMUSG00000065508	Mir17	Mirn17|mir-17|mmu-mir-17	microRNA 17	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-71873999-4	chr7	71873512	71874512	+	866.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35683.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	4.5	15.0	6.0	30.0	50.0	41.0
Merged-chr13-110902961-3	chr13	110902471	110903471	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131193)	promoter-TSS (NR_131193)	-528.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118104149-3	chr10	118103641	118104641	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-37646.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74652159-3	chr11	74651653	74652653	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081158, intron 1 of 25)	intron (NM_001081158, intron 1 of 25)	2658.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	0.0	3.0	1.0	0.0	0.5	0.0
Merged-chr13-119616121-3	chr13	119615678	119616678	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7641.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8537287-3	chr12	8536826	8537826	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001286385)	TTS (NM_001286385)	2240.0	NM_001038660	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	2.0	1.5	6.0	2.0	1.5	6.0
Merged-chr16-93884403-3	chr16	93883909	93884909	+	866.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028083, intron 1 of 13)	CpG	508.0	NM_028083	110749.0	Mm.274222	NM_028083	ENSMUSG00000022945	Chaf1b	2600017H24Rik|C76145|CAF-I p60|CAF-Ip60|CAF1|CAF1A|CAF1P60|MPHOSPH7	chromatin assembly factor 1, subunit B (p60)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119242489-3	chr2	119242000	119243000	+	866.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016907, intron 2 of 10)	intron (NM_016907, intron 2 of 10)	5140.0	NM_016907	20732.0	Mm.104955	NM_016907	ENSMUSG00000027315	Spint1	HAI-1	serine protease inhibitor, Kunitz type 1	protein-coding	0.0	1.0	2.5	0.0	0.0	0.5
Merged-chr5-124111216-3	chr5	124110723	124111723	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1098.0	NM_001361482	66627.0	Mm.7050	NM_025671	ENSMUSG00000023707	Ogfod2	1300006G11Rik|5730405M13Rik|AU041636|AW552395	2-oxoglutarate and iron-dependent oxygenase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-18318692-3	chr10	18318215	18319215	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-83734.0	NM_144820	215814.0	Mm.296565	NM_144820	ENSMUSG00000059554	Ccdc28a	1700009P13Rik|AI480677	coiled-coil domain containing 28A	protein-coding	0.0	3.0	0.0	0.0	0.0	0.0
Merged-chr16-36798505-3	chr16	36798004	36799004	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134111, intron 5 of 5)	ORR1A3-int|LTR|ERVL-MaLR	10201.0	NM_001113405	106389.0	Mm.432078	NM_134111	ENSMUSG00000022838	Eaf2	AW048865|FESTA-L|FESTA-S|Festa|Traits|U19	ELL associated factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-60826899-3	chr9	60826401	60827401	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357408, intron 1 of 19)	intron (NM_001357408, intron 1 of 19)	32459.0	NM_001357407	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124898124-3	chr6	124897622	124898622	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER102a|DNA|hAT-Charlie	-9922.0	NM_013488	12504.0	Mm.2209	NM_013488	ENSMUSG00000023274	Cd4	L3T4|Ly-4	CD4 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-63123268-3	chr15	63122774	63123774	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	356334.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	0.0	5.5	0.0	3.0	1.0	2.5
Merged-chr2-129634094-3	chr2	129633581	129634581	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38619.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	59.5	81.0	72.0	74.0	61.5	65.5
Merged-chr2-119210419-3	chr2	119209911	119210911	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028054, intron 1 of 10)	intron (NM_028054, intron 1 of 10)	-1616.0	NM_139139	69408.0	Mm.222241	NM_139139	ENSMUSG00000034278	Dnajc17	1700025B16Rik|C87112|D9Bwg1371e	DnaJ heat shock protein family (Hsp40) member C17	protein-coding	0.0	6.5	1.0	0.0	11.5	3.0
Merged-chr9-56947659-3	chr9	56947163	56948163	+	866.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3261.0	NM_178374	66069.0	Mm.220984	NM_178374	ENSMUSG00000055334	Snupn	0610031A09Rik|Rnut1|Snupn1	snurportin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-33513439-3	chr4	33512865	33513865	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75284.0	NR_106198	102465904.0		NR_106198	ENSMUSG00000098310	Mir8118	Gm27954|mmu-mir-8118	microRNA 8118	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122207913-3	chr5	122207412	122208412	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1817.0	NM_001042489	74096.0	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120114830-3	chr6	120114309	120115309	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	21429.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-51964580-2	chr15	51964080	51965080	+	866.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009009, intron 13 of 13)	intron (NM_009009, intron 13 of 13)	27180.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25415383-4	chr12	25414876	25415876	+	866.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	286202.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.0	1.0	7.5	8.0	14.0	7.0
Merged-chr5-148554275-2	chr5	148553748	148554748	+	866.666626	f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-1460.0	NM_001359199	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	35.5	77.0	47.5	13.0	32.5	13.0
Merged-chr7-111024412-4	chr7	111023909	111024909	+	866.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4542.0	NM_009431	22083.0	Mm.255858	NM_009431	ENSMUSG00000005609	Ctr9	AA409336|Sh2bp1|Tsbp|Tsp|mKIAA0155	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-56865296-4	chr4	56864802	56865802	+	866.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018761)	promoter-TSS (NM_018761)	-91.0	NM_018761	54366.0	Mm.218891	NM_018761	ENSMUSG00000038816	Ctnnal1	ACRP|AI616177|AW545119|C86009|Catnal1	catenin (cadherin associated protein), alpha-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59685588-3	chr15	59685073	59686073	+	866.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36919.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23517698-4	chr13	23517198	23518198	+	866.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Met-i|tRNA|tRNA	-13346.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55640664-4	chr13	55640168	55641168	+	866.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282055, intron 3 of 22)	B3A|SINE|B2	5669.0	NM_001282055	212880.0	Mm.202725	NM_145975	ENSMUSG00000021500	Ddx46	2200005K02Rik|8430438J23Rik|AI325430|AI957095|mKIAA0801	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	protein-coding	2.0	0.0	0.0	0.0	0.0	0.5
Merged-chr10-108155871-4	chr10	108155383	108156383	+	866.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6517.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-137406251-2	chr7	137405751	137406751	+	866.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_029886, intron 1 of 3)	intron (NM_029886, intron 1 of 3)	4505.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3851037-3	chr19	3850553	3851553	+	866.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013490)	promoter-TSS (NM_013490)	-720.0	NM_001271496	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29383499-3	chr7	29382985	29383985	+	866.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081028, intron 8 of 22)	intron (NM_001081028, intron 8 of 22)	79480.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62789321-3	chr11	62788804	62789804	+	866.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138949, intron 1 of 5)	intron (NM_138949, intron 1 of 5)	113.0	NM_138949	192651.0	Mm.168530	NM_138949	ENSMUSG00000047342	Zfp286	BC027023	zinc finger protein 286	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-13473124-4	chr3	13472641	13473641	+	866.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357036, exon 1 of 9)	5' UTR (NM_001357036, exon 1 of 9)	342.0	NM_001357036	76897.0	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-115383791-4	chr10	115383258	115384258	+	866.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025780, intron 1 of 2)	intron (NM_025780, intron 1 of 2)	677.0	NM_025780	66816.0	Mm.32314	NM_025780	ENSMUSG00000020137	Thap2	2900040O07Rik|9030625G08Rik|AI450385|AI649097	THAP domain containing, apoptosis associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151002125-4	chr1	151001629	151002629	+	866.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-8694.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44586213-3	chr11	44585719	44586719	+	866.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126460)	promoter-TSS (NR_126460)	-98.0	NR_126460	75389.0	Mm.261421	NR_126460	ENSMUSG00000086501	4930597A21Rik	-	RIKEN cDNA 4930597A21 gene	ncRNA	0.5	0.0	2.0	0.0	0.5	0.0
Merged-chr9-48559980-3	chr9	48559487	48560487	+	866.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45136.0	NM_010924	18113.0	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	37.5	21.0	31.5	15.5	38.0	64.5
Merged-chr17-79020614-6	chr17	79020084	79021084	+	866.544434	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171004, intron 1 of 18)	CpG	232.0	NM_001171004	75292.0	Mm.252776	NM_029239	ENSMUSG00000024070	Prkd3	4930557O20Rik|5730497N19Rik|PKD3|Pkcnu|Prkcn	protein kinase D3	protein-coding	0.0	0.0	6.0	0.0	1.5	5.5
Merged-chr4-7154448-4	chr4	7153950	7154950	+	866.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-163727.0	NM_145711	252838.0	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6857486-4	chr19	6856955	6857955	+	866.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081291, exon 3 of 27)	exon (NM_001081291, exon 3 of 27)	756.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53180693-4	chr4	53180184	53181184	+	866.520874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20789.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59227495-2	chr10	59226995	59227995	+	866.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	5573.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102330965-1	chr12	102330465	102331465	+	866.5	f0_balb.idr	intron (NM_177620, intron 3 of 9)	MLT1I|LTR|ERVL-MaLR	47324.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	1.5	1.5	0.5	0.0	0.0	0.5
Merged-chr19-18714341-2	chr19	18713841	18714841	+	866.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177640, intron 1 of 1)	intron (NM_177640, intron 1 of 1)	1105.0	NM_177640	225995.0	Mm.28101	NM_177640	ENSMUSG00000047044	D030056L22Rik	-	RIKEN cDNA D030056L22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-137778394-2	chr3	137777894	137778894	+	866.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5221.0	NR_105801	102466638.0		NR_105801	ENSMUSG00000099011	Mir6380	Gm27356|mmu-mir-6380	microRNA 6380	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112816429-2	chr12	112815929	112816929	+	866.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145450)	TTS (NM_145450)	7454.0	NM_145450	217887.0	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Clba1|Flj20080	cDNA sequence BC022687	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-102692056-2	chr13	102691556	102692556	+	866.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1491.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-52501512-3	chr1	52501020	52502020	+	866.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1072.0	NM_008667	17936.0	Mm.25903	NM_008667	ENSMUSG00000002881	Nab1	-	Ngfi-A binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3382483-3	chr5	3381963	3382963	+	866.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	38570.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25751059-2	chr7	25750559	25751559	+	866.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360789, intron 1 of 14)	intron (NM_001360789, intron 1 of 14)	3700.0	NM_144922	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45600341-2	chr17	45599841	45600841	+	866.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199115)	promoter-TSS (NM_001199115)	-738.0	NM_001199115	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31853110-2	chr17	31852610	31853610	+	866.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010831, intron 3 of 13)	intron (NM_010831, intron 3 of 13)	2694.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	1.5	6.0	3.5	0.0	1.0	2.5
Merged-chr17-46162275-2	chr17	46161775	46162775	+	866.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357745, exon 1 of 12)	5' UTR (NM_001357745, exon 1 of 12)	211.0	NM_001357745	56055.0	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128249817-2	chr2	128249317	128250317	+	866.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122242.0	NM_001284410	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80798542-2	chr17	80798042	80799042	+	866.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70517.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106499109-5	chr11	106498560	106499560	+	866.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-1931.0	NR_030703	100216537.0		NR_030703	ENSMUSG00000065126	Snord104	-	small nucleolar RNA, C/D box 104	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11768319-2	chr19	11767818	11768818	+	866.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2097.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	2.5	0.0	5.0	0.0	7.5	8.5
Merged-chr12-108764492-2	chr12	108763992	108764992	+	866.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Ricksha_c|DNA|MULE-MuDR	-28819.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136152357-2	chr4	136151857	136152857	+	866.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8535.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-82867843-4	chr7	82867399	82868399	+	866.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175366, exon 1 of 2)	exon (NM_175366, exon 1 of 2)	566.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27025246-2	chr2	27024746	27025746	+	866.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172659, exon 4 of 10)	exon (NM_172659, exon 4 of 10)	2752.0	NM_172659	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6308928-2	chr19	6308428	6309428	+	866.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033342, intron 1 of 36)	intron (NM_001033342, intron 1 of 36)	2471.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-46003883-2	chr9	46003383	46004383	+	866.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357241, intron 1 of 5)	intron (NM_001357241, intron 1 of 5)	8807.0	NM_001357241	18475.0	Mm.200859	NM_008775	ENSMUSG00000003131	Pafah1b2	2610005M20Rik|AI747451|AU021353|Pafahb|mus[b]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122375780-2	chr8	122375280	122376280	+	866.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310650)	promoter-TSS (NM_001310650)	-829.0	NM_001310650	76014.0	Mm.241489	NM_001029993	ENSMUSG00000017478	Zc3h18	1190001B23Rik|5830416A07Rik|Nhn1	zinc finger CCCH-type containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117308965-2	chr11	117308465	117309465	+	866.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-22750.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73147921-4	chr15	73147434	73148434	+	866.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	37013.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141459722-2	chr7	141459222	141460222	+	866.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028142, exon 10 of 10)	non-coding (NR_028142, exon 10 of 10)	-1372.0	NM_001025103	213573.0	Mm.386851	NM_001025103	ENSMUSG00000048200	Cracr2b	6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a	calcium release activated channel regulator 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55910460-2	chr16	55909960	55910960	+	866.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028815, intron 10 of 10)	RMER1A|Other|Other	-15181.0	NM_001134457	385658.0	Mm.310635	NM_001134457	ENSMUSG00000075033	Nxpe3	Fam55c|Gm1752|Gm611	neurexophilin and PC-esterase domain family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-87572209-2	chr7	87571709	87572709	+	866.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-11959.0	NM_001081414	108071.0	Mm.235018	NM_001033224	ENSMUSG00000049583	Grm5	6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b	glutamate receptor, metabotropic 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-53574428-2	chr6	53574004	53575004	+	866.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172728, intron 1 of 6)	intron (NM_172728, intron 1 of 6)	1130.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.0	9.0	3.0	7.5	11.5	3.0
Merged-chr5-73532907-2	chr5	73532407	73533407	+	866.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153313, intron 6 of 9)	intron (NR_153313, intron 6 of 9)	41881.0	NM_178896	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118705231-2	chr9	118704728	118705728	+	866.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 15 of 27)	intron (NM_133721, intron 15 of 27)	-6464.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	57.0	186.5	148.0	40.5	87.5	67.5
Merged-chr16-4871052-2	chr16	4870552	4871552	+	866.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8799.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122428822-2	chr8	122428322	122429322	+	866.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301284, intron 1 of 4)	ID_B1|SINE|B4	4118.0	NM_001301284	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84189405-2	chr17	84188905	84189905	+	866.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_183021)	TTS (NM_183021)	-1458.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-37063977-4	chr8	37063484	37064484	+	866.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39746.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	0.0	0.5	9.5	2.5	6.0	3.5
Merged-chr11-114926841-4	chr11	114926241	114927241	+	866.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347651, intron 2 of 3)	intron (NM_001347651, intron 2 of 3)	7645.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-49489092-4	chr9	49488606	49489606	+	866.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2881.0	NM_172770	235330.0	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding	0.0	0.0	4.0	5.0	0.0	1.5
Merged-chr6-115362203-3	chr6	115361697	115362697	+	866.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308354)	promoter-TSS (NM_001308354)	-152.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81494812-4	chr10	81494337	81495337	+	866.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134009, intron 1 of 13)	intron (NM_134009, intron 1 of 13)	1526.0	NM_134009	103425.0	Mm.302791	NM_134009	ENSMUSG00000020238	Ncln	3100002P13Rik|AW120537	nicalin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29664276-4	chr2	29663765	29664765	+	866.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	44545.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	2.0	3.0	7.0	2.0	3.0	7.5
Merged-chr6-114698065-2	chr6	114697565	114698565	+	866.4166869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 10 of 19)	intron (NM_001253718, intron 10 of 19)	54968.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81046338-4	chr15	81045861	81046861	+	866.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	58686.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-85604568-4	chr3	85604062	85605062	+	866.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144896, exon 4 of 13)	exon (NM_144896, exon 4 of 13)	30433.0	NM_144896	229487.0	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80026644-2	chr7	80026144	80027144	+	866.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	416.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-166802158-4	chr1	166801665	166802665	+	866.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120320.0	NM_001347135	240894.0	Mm.246610	NM_172844	ENSMUSG00000026560	Fmo9	4831428F09Rik	flavin containing monooxygenase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8635785-4	chr12	8635306	8636306	+	866.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36740.0	NM_177802	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-130937066-3	chr6	130936570	130937570	+	866.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_3-LTR_MM|LTR|ERVK	310292.0	NM_001170851	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	0.5	0.0	0.0	0.0	0.0	0.5
Merged-chr5-16554540-3	chr5	16554028	16555028	+	866.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289458, intron 2 of 18)	intron (NM_001289458, intron 2 of 18)	627.0	NM_001289461	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86859478-4	chr12	86858983	86859983	+	866.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25331.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-137649299-4	chr6	137648802	137649802	+	866.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271588)	promoter-TSS (NM_001271588)	-17.0	NM_007945	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114680961-4	chr11	114680494	114681494	+	866.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	5526.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83568808-4	chr7	83568288	83569288	+	866.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16143.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-124805205-4	chr4	124804692	124805692	+	866.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008636, intron 2 of 10)	intron (NM_008636, intron 2 of 10)	2643.0	NM_008636	17764.0	Mm.272397	NM_008636	ENSMUSG00000028890	Mtf1	MTF-1|Thyls	metal response element binding transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59547265-4	chr9	59546763	59547763	+	866.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	7723.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-74938823-3	chr9	74938324	74939324	+	866.361084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14056.0	NM_001359816	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	1.5	0.0	0.5	1.5	0.0	0.0
Merged-chr12-40536206-7	chr12	40535642	40536642	+	866.357117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	MLTR11A|LTR|ERVK	90089.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36069355-4	chr1	36068866	36069866	+	866.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	966.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31110081-4	chr6	31109590	31110590	+	866.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-46997.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35817489-4	chr16	35816999	35817999	+	866.337524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152314, intron 6 of 8)	intron (NR_152314, intron 6 of 8)	47113.0	NM_175111	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	2.0	1.0	0.0	0.0	14.5	0.0
Merged-chr8-113637968-2	chr8	113637514	113638514	+	866.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_173015, exon 2 of 5)	exon (NM_173015, exon 2 of 5)	2215.0	NM_173015	270096.0	Mm.74689	NM_173015	ENSMUSG00000078908	Mon1b	5031407H10|5033413H12Rik	MON1 homolog B, secretory traffciking associated	protein-coding	3.5	0.0	0.0	0.0	0.5	1.0
Merged-chr5-21283927-2	chr5	21283427	21284427	+	866.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359876, intron 25 of 29)	intron (NM_001359876, intron 25 of 29)	-88746.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-52541492-3	chr12	52540984	52541984	+	866.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009706, intron 1 of 5)	intron (NM_009706, intron 1 of 5)	25407.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	5.0	7.0	1.0	6.0	0.0	3.0
Merged-chr11-61659195-3	chr11	61658691	61659691	+	866.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027817, intron 1 of 4)	intron (NM_027817, intron 1 of 4)	5870.0	NM_027817	71520.0	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-91254329-4	chr15	91253839	91254839	+	866.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62332.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128000772-3	chr7	128000301	128001301	+	866.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-3577.0	NM_001079932	434246.0	Mm.389924	NM_001079932	ENSMUSG00000042828	Trim72	BC067209|MG53	tripartite motif-containing 72	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88242703-3	chr6	88242194	88243194	+	866.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20426.0	NM_019964	56691.0	Mm.272871	NM_019964	ENSMUSG00000048206	Dnajb8	1700016F14Rik|1700031F10Rik|AI326313|mDj6	DnaJ heat shock protein family (Hsp40) member B8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-71189238-4	chr9	71188743	71189743	+	866.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110517, intron 5 of 5)	intron (NR_110517, intron 5 of 5)	20467.0	NR_110517	102635087.0	Mm.444536	NR_110517	ENSMUSG00000111429	Gm32511	-	predicted gene, 32511	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57431485-3	chr16	57431006	57432006	+	866.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	78229.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	31.5	26.5	19.5	2.0	0.0	4.0
Merged-chr12-13562838-3	chr12	13562344	13563344	+	866.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027706, intron 50 of 51)	intron (NM_027706, intron 50 of 51)	64802.0	NR_136761	102639399.0	Mm.122052	NR_136761	ENSMUSG00000113666	Gm35725	-	predicted gene, 35725	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50223795-3	chr11	50223262	50224262	+	866.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-1573.0	NM_145926	103534.0	Mm.86759	NM_145926	ENSMUSG00000036620	Mgat4b	AA407995|GnTIVb	mannoside acetylglucosaminyltransferase 4, isoenzyme B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11548040-3	chr11	11547531	11548531	+	866.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	UCON26|Unknown|Unknown	58765.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75184515-3	chr14	75184020	75185020	+	866.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	RMER1B|Other|Other	48095.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	12.5	30.5	15.5	12.5	31.5	15.0
Merged-chr12-77056893-3	chr12	77056417	77057417	+	866.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94669.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-86885655-3	chr14	86885187	86886187	+	866.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019670, intron 20 of 27)	intron (NM_019670, intron 20 of 27)	255537.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	0.0	3.0	3.0	10.0	5.0	4.0
Merged-chr18-82538463-3	chr18	82538062	82539062	+	866.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025245, intron 3 of 3)	intron (NM_001025245, intron 3 of 3)	-15901.0	NM_001025258	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80121753-3	chr10	80121227	80122227	+	866.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301853, intron 1 of 8)	PB1D10|SINE|Alu	5924.0	NM_001301854	20869.0	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92895265-3	chr1	92894772	92895772	+	866.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347091, intron 4 of 17)	intron (NM_001347091, intron 4 of 17)	7634.0	NM_172850	241158.0	Mm.108280	NM_172850	ENSMUSG00000034212	Ankmy1	4930483I10Rik|ZMYND13	ankyrin repeat and MYND domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71561744-2	chr17	71561244	71562244	+	866.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NR_015549, intron 5 of 6)	intron (NR_015549, intron 5 of 6)	9683.0	NM_029254	70891.0	Mm.477599	NM_029254	ENSMUSG00000052525	Spdya	4921517J08Rik|4930548B21Rik|GS4|MLZ-465|Spdy1	speedy/RINGO cell cycle regulator family, member A	protein-coding	0.0	0.5	2.5	0.0	0.5	2.0
Merged-chr2-24976685-3	chr2	24976192	24977192	+	866.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146251, intron 1 of 34)	B1_Mus2|SINE|Alu	659.0	NM_146251	241274.0	Mm.389243	NM_146251	ENSMUSG00000036833	Pnpla7	BC027342|E430013P11Rik|Nre	patatin-like phospholipase domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128776992-3	chr4	128776469	128777469	+	866.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081098, intron 8 of 8)	intron (NM_001081098, intron 8 of 8)	17711.0	NM_001009819	215493.0	Mm.300900	NM_001009819	ENSMUSG00000028794	A3galt2	Gm433|iGb3|iGb3S	alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164972939-4	chr2	164972448	164973448	+	866.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020333, intron 1 of 25)	L2b|LINE|L2	4960.0	NM_020333	57138.0	Mm.252987	NM_020333	ENSMUSG00000017740	Slc12a5	KCC2|mKIAA1176	solute carrier family 12, member 5	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr7-25306459-2	chr7	25305959	25306959	+	866.2999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_183311, intron 1 of 14)	intron (NM_183311, intron 1 of 14)	351.0	NM_183311	330485.0	Mm.260740	NM_183311	ENSMUSG00000043843	Tmem145	B930076A02Rik	transmembrane protein 145	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78600720-4	chr11	78600207	78601207	+	866.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008702, intron 3 of 10)	intron (NM_008702, intron 3 of 10)	-49972.0	NM_133706	69071.0	Mm.29431	NM_133706	ENSMUSG00000037278	Tmem97	1810014L12Rik|AI115531|AL022956|D11Bhm182e	transmembrane protein 97	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45032743-4	chr19	45032232	45033232	+	866.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195265, intron 10 of 15)	intron (NM_001195265, intron 10 of 15)	13040.0	NM_001195265	100503041.0	Mm.329877	NM_177605	ENSMUSG00000074818	Pdzd7	9130207N01|EG435601|Pdzk7	PDZ domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184023260-4	chr1	184022767	184023767	+	866.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10731.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	1.5	28.5	12.5	6.0	21.5	18.0
Merged-chr5-120605168-3	chr5	120604712	120605712	+	866.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029408, intron 4 of 4)	intron (NM_029408, intron 4 of 4)	7377.0	NM_029096	100764.0	Mm.9654	NM_029096	ENSMUSG00000029600	Rita1	1110008J03Rik|AI853657|C86297|Rita	RBPJ interacting and tubulin associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-26203663-4	chr11	26203158	26204158	+	866.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027973, intron 1 of 5)	intron (NR_027973, intron 1 of 5)	1418.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84177579-2	chr12	84177079	84178079	+	866.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	16436.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45047471-5	chr14	45046952	45047952	+	866.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	59341.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58775755-4	chr15	58775250	58776250	+	866.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47677.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149980108-4	chr4	149979608	149980608	+	866.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173371, exon 5 of 5)	3' UTR (NM_173371, exon 5 of 5)	23128.0	NM_001291004	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	0.5	0.0	0.0	0.0	0.0	0.5
Merged-chr16-91778144-4	chr16	91777657	91778657	+	866.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	48786.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	1.0	6.0	5.5	1.0	6.0	5.5
Merged-chr15-30740923-4	chr15	30740426	30741426	+	866.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 9 of 21)	intron (NM_001355502, intron 9 of 21)	-298200.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	0.0	0.0	1.5	0.0	3.5	1.0
Merged-chr4-88351129-4	chr4	88350588	88351588	+	866.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081184, intron 28 of 43)	intron (NM_001081184, intron 28 of 43)	87838.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	0.0	2.0	0.0	0.0	2.0	0.0
Merged-chr15-101275850-3	chr15	101275348	101276348	+	866.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8453.0	NM_026566	68118.0	Mm.482360	NM_026566	ENSMUSG00000037204	Atg101	9430023L20Rik|AA407441|AU022967	autophagy related 101	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86536046-4	chr17	86535527	86536527	+	866.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 10 of 14)	intron (NM_011104, intron 10 of 14)	-217837.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61968721-4	chr14	61968274	61969274	+	866.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-286401.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14651598-4	chr8	14651096	14652096	+	866.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-236940.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	30.5	9.0	31.0	2.0	1.5	15.0
Merged-chr5-108694854-4	chr5	108694330	108695330	+	866.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054071, intron 1 of 6)	CpG	601.0	NM_054071	116701.0	Mm.35691	NM_054071	ENSMUSG00000008090	Fgfrl1	FGFR5|FGFR5beta|FGFR5gamma	fibroblast growth factor receptor-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-91180067-4	chr15	91179564	91180564	+	866.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011994, intron 3 of 9)	intron (NM_011994, intron 3 of 9)	11943.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-74026484-4	chr13	74025961	74026961	+	866.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182839, intron 2 of 3)	intron (NM_182839, intron 2 of 3)	17042.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50384553-4	chr6	50384063	50385063	+	866.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163645, intron 2 of 21)	ORR1E|LTR|ERVL-MaLR	-1726.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27338623-4	chr3	27338137	27339137	+	866.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009425, exon 5 of 5)	3' UTR (NM_009425, exon 5 of 5)	21560.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118631801-4	chr9	118631288	118632288	+	866.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 3 of 27)	Lx5c|LINE|L1	25079.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.0	1.5	3.0	0.0	0.0	0.0
Merged-chr19-4301951-3	chr19	4301450	4302450	+	866.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	4272.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47510808-4	chr19	47510305	47511305	+	866.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175360, intron 7 of 9)	intron (NM_175360, intron 7 of 9)	-2177.0	NR_045322	100503104.0	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137872829-4	chr5	137872296	137873296	+	866.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1038.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112509652-3	chr13	112509187	112510187	+	866.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45617.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	4.5	1.0	0.0	0.0	0.0	0.5
Merged-chr9-22327086-3	chr9	22326544	22327544	+	866.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C-int|LTR|ERVK	3646.0	NR_033622	625603.0	Mm.37987	NR_033622		Gm6607	EG625603	40S ribosomal protein S20 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4836933-2	chr11	4836404	4837404	+	866.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_010898, intron 1 of 15)	intron (NM_010898, intron 1 of 15)	-3769.0	NM_001252253	18016.0	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	3.5	0.0	3.5	0.0	0.0	0.0
Merged-chr3-89512512-2	chr3	89512012	89513012	+	866.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7652.0	NM_080466	140493.0	Mm.120250	NM_080466	ENSMUSG00000000794	Kcnn3	KCa2.3|SK3|SKCA3	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111929336-3	chr13	111928753	111929753	+	866.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61317.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5431015-2	chr11	5430515	5431515	+	866.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080924, intron 1 of 8)	intron (NM_001080924, intron 1 of 8)	13832.0	NM_001080924	407821.0	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	2.5	0.0	0.0	2.5	2.0	0.0
Merged-chr7-67479458-4	chr7	67479024	67480024	+	866.160706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106666.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.0	3.0	3.0	0.0	3.5	2.0
Merged-chr2-70503617-3	chr2	70503121	70504121	+	866.138855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040496, intron 1 of 2)	intron (NR_040496, intron 1 of 2)	-5198.0	NM_025744	66748.0	Mm.423014	NM_025744	ENSMUSG00000075302	Erich2	4933404M02Rik	glutamate rich 2	protein-coding	0.0	3.5	0.0	0.0	0.0	0.5
Merged-chr5-105506630-3	chr5	105506135	105507135	+	866.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	-12836.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	2.5	2.5	3.0	11.5	46.0	37.0
Merged-chr14-73384364-4	chr14	73383847	73384847	+	866.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008410, intron 1 of 5)	intron (NM_008410, intron 1 of 5)	942.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-18935679-4	chr8	18935189	18936189	+	866.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176951, intron 6 of 6)	intron (NM_176951, intron 6 of 6)	15182.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95803356-3	chr10	95802856	95803856	+	866.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-137307.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-34356831-3	chr15	34356328	34357328	+	866.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256161, intron 1 of 3)	hAT-N1_Mam|DNA|hAT?	1044.0	NM_001256161	77358.0	Mm.402759	NM_001256161	ENSMUSG00000094447	9430069I07Rik	-	RIKEN cDNA 9430069I07 gene	protein-coding	1.5	1.5	4.5	0.0	5.5	3.0
Merged-chr10-8415734-3	chr10	8415236	8416236	+	866.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 1 of 7)	intron (NM_177387, intron 1 of 7)	103089.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73594648-4	chr7	73594131	73595131	+	866.104126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36236.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83802154-4	chr7	83801648	83802648	+	866.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7309.0	NM_029335	75556.0	Mm.17649	NM_029335	ENSMUSG00000011154	Cfap161	1700026D08Rik|AW047638|AW551802	cilia and flagella associated protein 161	protein-coding	17.5	23.5	20.0	25.5	17.0	15.0
Merged-chr11-74547320-5	chr11	74546847	74547847	+	866.093323	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	42811.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	5.0	7.0	5.0	0.0	4.5	3.5
Merged-chr13-41583863-4	chr13	41583288	41584288	+	866.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEb|LINE|L1	-22428.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77033895-4	chr10	77033392	77034392	+	866.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031196, intron 1 of 5)	intron (NM_031196, intron 1 of 5)	680.0	NM_031196	20509.0	Mm.265060	NM_031196	ENSMUSG00000001436	Slc19a1	AI323572|RFC|RFC-1|RFC1	solute carrier family 19 (folate transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86683482-4	chr4	86682979	86683979	+	866.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-13420.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	0.0	11.5	1.0	1.5	8.5	0.0
Merged-chr2-129675128-4	chr2	129674653	129675653	+	866.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23505.0	NM_001286502	18610.0	Mm.6239	NM_018863	ENSMUSG00000027400	Pdyn	Dyn	prodynorphin	protein-coding	0.0	4.0	1.0	0.0	7.0	0.0
Merged-chr15-78860707-4	chr15	78860221	78861221	+	866.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-5192.0	NM_025622	107753.0	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	17.5	43.5	44.0	49.5	62.5	91.0
Merged-chr5-93129657-4	chr5	93129152	93130152	+	866.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009818, intron 1 of 9)	intron (NM_001009818, intron 1 of 9)	36236.0	NM_001347377	52398.0	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	2.5	0.0	13.0	0.0	1.5	7.0
Merged-chr11-114877299-6	chr11	114876843	114877843	+	866.022217	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-12698.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114664916-2	chr5	114664416	114665416	+	866.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6495.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-13052270-3	chr6	13051777	13052777	+	866.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17482.0	NM_027992	71900.0	Mm.27742	NM_027992	ENSMUSG00000029571	Tmem106b	2310036D22Rik|5830455K21Rik|6430519M21Rik|AI428776|AI661344	transmembrane protein 106B	protein-coding	0.5	8.0	1.5	0.0	0.0	0.0
Merged-chr9-75535320-2	chr9	75534820	75535820	+	866.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357828, intron 1 of 10)	Lx7|LINE|L1	24337.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43935320-3	chr1	43934784	43935784	+	866.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009418, intron 1 of 29)	intron (NM_009418, intron 1 of 29)	1290.0	NM_009418	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59565796-4	chr9	59565309	59566309	+	866.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010421)	TTS (NM_010421)	-12528.0	NM_175235	76183.0	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69017402-3	chr3	69016888	69017888	+	866.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356976, intron 7 of 23)	B4A|SINE|B4	7486.0	NR_029735	723949.0		NR_029735	ENSMUSG00000065606	Mir16-2	Mirn16-2|mir-16-2	microRNA 16-2	ncRNA	2.0	3.5	3.0	8.0	3.0	2.0
Merged-chr13-110978893-3	chr13	110978383	110979383	+	866.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75037.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-44381718-2	chr18	44381218	44382218	+	866.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027490, intron 1 of 10)	intron (NM_027490, intron 1 of 10)	1218.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116306626-2	chr7	116306126	116307126	+	866.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305185, intron 3 of 26)	intron (NM_001305185, intron 3 of 26)	1750.0	NM_001305185	233765.0	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66143018-1	chr5	66142518	66143518	+	866.0	f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	B2_Mm2|SINE|B2	7960.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	54.5	93.0	67.5	24.5	38.5	27.0
Merged-chr14-97709616-2	chr14	97709116	97710116	+	866.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	460149.0	NM_001038610	13134.0	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund family transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101846178-2	chr15	101845678	101846678	+	866.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008473, exon 9 of 9)	exon (NM_008473, exon 9 of 9)	4608.0	NM_008473	16678.0	Mm.183137	NM_008473	ENSMUSG00000046834	Krt1	Krt-2.1|Krt2-1|Krt86	keratin 1	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr11-34213073-3	chr11	34212565	34213565	+	866.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4976.0	NM_023907	14233.0	Mm.32926	NM_023907	ENSMUSG00000047861	Foxi1	5830401E05Rik|FREAC6|Fkh10|HFH-3|Hfh3	forkhead box I1	protein-coding	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr16-38762896-2	chr16	38762396	38763396	+	866.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152434, intron 4 of 6)	intron (NR_152434, intron 4 of 6)	20637.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60613791-3	chr13	60613286	60614286	+	866.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	11575.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84325296-4	chr15	84324756	84325756	+	866.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162500)	promoter-TSS (NM_001162500)	536.0	NM_022321	64099.0	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	17.0	25.5	30.5	8.5	26.0	24.5
Merged-chr17-71672170-2	chr17	71671670	71672670	+	866.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1091.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88630242-3	chr5	88629754	88630754	+	866.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 8 of 13)	intron (NM_001359208, intron 8 of 13)	45326.0	NM_001098476	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112928161-2	chr13	112927661	112928661	+	866.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028151)	promoter-TSS (NM_028151)	368.0	NM_172594	218629.0	Mm.35094	NM_172594	ENSMUSG00000042426	Dhx29	3732415M03|AU043276|Ddxx|E130202M19Rik	DEAH (Asp-Glu-Ala-His) box polypeptide 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34651640-2	chr17	34651180	34652180	+	866.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_017406, exon 10 of 18)	exon (NM_017406, exon 10 of 18)	4534.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	1.5	3.0	2.0	1.5	3.0	2.5
Merged-chr6-113078164-3	chr6	113077653	113078653	+	866.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027008)	promoter-TSS (NR_027008)	514.0	NM_028385	72895.0	Mm.367159	NM_028385	ENSMUSG00000034269	Setd5	2900045N06Rik|C330007C20|C85544|mKIAA1757	SET domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94371594-4	chr8	94371109	94372109	+	866.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14820.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29831721-2	chr6	29831221	29832221	+	866.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	ID4|SINE|ID	-22020.0	NM_001347084	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-131554016-3	chr7	131553527	131554527	+	866.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145998)	promoter-TSS (NM_145998)	-35.0	NM_145998	15372.0	Mm.303357	NM_145998	ENSMUSG00000050100	Hmx2	Nkx-5.2|Nkx5-2	H6 homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81362570-2	chr10	81362070	81363070	+	866.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028657, intron 6 of 9)	intron (NM_028657, intron 6 of 9)	3250.0	NM_001014836	432479.0	Mm.440450	NM_001014836	ENSMUSG00000020234	4930404N11Rik	2210409H10Rik|5730551K18Rik|AI854616	RIKEN cDNA 4930404N11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-96151598-2	chr16	96151098	96152098	+	866.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207301, intron 1 of 4)	intron (NM_207301, intron 1 of 4)	6179.0	NM_207301	71446.0	Mm.255063	NM_207301	ENSMUSG00000023147	Wrb	5530402J05Rik|C030018G21Rik|Chd5	tryptophan rich basic protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-37643211-2	chr18	37642711	37643711	+	866.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175770, exon 2 of 2)	exon (NM_175770, exon 2 of 2)	993.0	NM_175770	24074.0	Mm.236009	NM_175770	ENSMUSG00000051316	Taf7	55kDa|AI607308|BB007175|TAFII55|Taf2f	TATA-box binding protein associated factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69921117-2	chr8	69920613	69921613	+	866.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 3 of 12)	intron (NM_001286450, intron 3 of 12)	-18555.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	61.5	180.0	106.0	65.5	131.5	100.0
Merged-chr1-52117087-3	chr1	52116558	52117558	+	866.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2380.0	NM_001357627	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	23.5	53.0	26.0	5.5	27.5	22.0
Merged-chr16-92818793-2	chr16	92818293	92819293	+	866.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	7281.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114697990-2	chr5	114697490	114698490	+	866.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-7055.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	2.5	1.5	3.5	4.5	30.5	11.5
Merged-chr13-60688386-2	chr13	60687886	60688886	+	866.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	86175.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-5518121-2	chr15	5517621	5518621	+	866.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045274, intron 1 of 4)	intron (NR_045274, intron 1 of 4)	21803.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125334803-3	chr5	125334326	125335326	+	866.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	6268.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	4.5	7.5	9.0	2.0	11.5	7.0
Merged-chr4-53071676-2	chr4	53071176	53072176	+	866.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 25 of 49)	intron (NM_013454, intron 25 of 49)	59796.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29439402-2	chr19	29438902	29439902	+	866.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 3 of 5)	intron (NM_021396, intron 3 of 5)	28483.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125351814-2	chr8	125351324	125352324	+	866.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	141009.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	0.0	9.0	3.5	2.5	0.0	5.5
Merged-chr5-92438333-3	chr5	92437828	92438828	+	866.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-3129.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11667725-4	chr11	11667158	11668158	+	866.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18267.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105933388-2	chr8	105932888	105933888	+	866.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023182, intron 1 of 6)	intron (NM_023182, intron 1 of 6)	474.0	NM_023182	109660.0	Mm.2745	NM_023182	ENSMUSG00000031896	Ctrl	0910001G08Rik|1810004D15Rik|AV005227|Ctra-1|Ctra1|chymopasin|mFLJ00366	chymotrypsin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117254996-2	chr8	117254496	117255496	+	866.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-2023.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70221806-3	chr11	70221280	70222280	+	866.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172371)	promoter-TSS (NM_172371)	-786.0	NM_172371	69309.0	Mm.93266	NM_172371	ENSMUSG00000044367	Slc16a13	1700007D07Rik	solute carrier family 16 (monocarboxylic acid transporters), member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81143290-2	chr10	81142790	81143790	+	866.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010731, intron 1 of 2)	intron (NM_010731, intron 1 of 2)	7019.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-24612747-4	chr1	24612245	24613245	+	866.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25308.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61680234-2	chr14	61679734	61680734	+	866.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	2139.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45805134-4	chr19	45804606	45805606	+	865.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145703, intron 1 of 9)	intron (NM_145703, intron 1 of 9)	7185.0	NM_001276358	80906.0	Mm.213204	NM_030716	ENSMUSG00000025221	Kcnip2	KChIP2	Kv channel-interacting protein 2	protein-coding	20.5	8.5	1.0	0.5	9.5	8.5
Merged-chr16-77284416-3	chr16	77283914	77284914	+	865.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44914.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-28315711-3	chr5	28315161	28316161	+	865.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR87|LTR|ERVL?	-1528.0	NM_028234	381626.0	Mm.304075	NM_028234	ENSMUSG00000048271	Rbm33	3200001K10Rik|6430512A10Rik|AA386890|Prr8	RNA binding motif protein 33	protein-coding	7.5	19.5	16.0	12.5	39.5	6.0
Merged-chr15-76233083-3	chr15	76232613	76233613	+	865.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163575, exon 11 of 11)	3' UTR (NM_001163575, exon 11 of 11)	-1735.0	NM_011117	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119782905-4	chr8	119782398	119783398	+	865.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4482.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-87022648-3	chr9	87022153	87023153	+	865.93335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359962, intron 1 of 14)	intron (NM_001359962, intron 1 of 14)	624.0	NM_001359962	266690.0	Mm.30166	NM_024195	ENSMUSG00000032872	Cyb5r4	2810034J18Rik|B5+B5R|C79736|Cb5cb5r|Ncb5or|b5/b5r|b5b5r	cytochrome b5 reductase 4	protein-coding	49.0	117.0	62.5	27.0	76.0	58.0
Merged-chr11-120030233-2	chr11	120029733	120030733	+	865.9285890000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	11548.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	0.0	1.5	0.0	0.0	1.5	0.0
Merged-chr4-47351694-4	chr4	47351207	47352207	+	865.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID2|SINE|ID	-1515.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-138311102-4	chr2	138310606	138311606	+	865.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32613.0	NM_145534	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65540849-8	chr17	65540325	65541325	+	865.8978880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289486)	promoter-TSS (NM_001289486)	-43.0	NM_001289486	381107.0	Mm.141275	NM_001008973	ENSMUSG00000045036	Tmem232	E130009J12Rik|Gm940|Tes13-L|Tes13-S	transmembrane protein 232	protein-coding	1.0	1.5	0.5	0.0	0.5	0.0
Merged-chr4-105226449-4	chr4	105225947	105226947	+	865.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 5 of 5)	intron (NM_080555, intron 5 of 5)	69100.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	3.0	0.0	0.5	0.0	0.0	2.5
Merged-chr8-111248044-3	chr8	111247527	111248527	+	865.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 1 of 25)	intron (NM_009149, intron 1 of 25)	11175.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4487634-3	chr2	4487132	4488132	+	865.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 4 of 23)	intron (NM_001177843, intron 4 of 23)	-72122.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94569126-4	chr10	94568594	94569594	+	865.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359760, intron 1 of 3)	intron (NM_001359760, intron 1 of 3)	-6163.0	NM_001168684	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58534984-4	chr9	58534490	58535490	+	865.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133983, intron 3 of 6)	intron (NM_133983, intron 3 of 6)	5950.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130890256-4	chr4	130889768	130890768	+	865.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23066.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123992991-2	chr5	123992510	123993510	+	865.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_145070, intron 7 of 31)	B3|SINE|B2	-3842.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	1.5	0.0	1.0	0.0	0.0	2.5
Merged-chr17-46783121-4	chr17	46782590	46783590	+	865.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025433)	promoter-TSS (NM_025433)	-434.0	NM_025433	66229.0	Mm.218533	NM_025433	ENSMUSG00000063888	Rpl7l1	1500016H10Rik	ribosomal protein L7-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120663865-2	chr8	120663365	120664365	+	865.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_010926, intron 1 of 4)	B3A|SINE|B2	4247.0	NM_010926	18117.0	Mm.2136	NM_010926	ENSMUSG00000031819	Emc8	Cox4nb|Fam158b|Noc4	ER membrane protein complex subunit 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56400406-4	chr19	56399921	56400921	+	865.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007611, intron 1 of 6)	ORR1F|LTR|ERVL-MaLR	3292.0	NM_007611	12369.0	Mm.35687	NM_007611	ENSMUSG00000025076	Casp7	AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7	caspase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-100920868-4	chr3	100920364	100921364	+	865.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1629.0	NM_001165952	229644.0	Mm.189351	NM_194343	ENSMUSG00000033233	Trim45	4921530N01Rik	tripartite motif-containing 45	protein-coding	10.0	29.0	6.5	10.5	9.5	8.5
Merged-chr4-133498013-2	chr4	133497513	133498513	+	865.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081156, exon 1 of 2)	exon (NM_001081156, exon 1 of 2)	537.0	NM_001081156	69539.0	Mm.151594	NM_001081156	ENSMUSG00000056596	Trnp1	2300002D11Rik|Trnp	TMF1-regulated nuclear protein 1	protein-coding	0.0	1.5	0.0	0.0	0.0	3.0
Merged-chr10-62499679-2	chr10	62499179	62500179	+	865.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 2 of 3)	AT_rich|Low_complexity|Low_complexity	8078.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80667308-2	chr10	80666808	80667808	+	865.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_021462, exon 14 of 14)	exon (NM_021462, exon 14 of 14)	8985.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127026212-8	chr7	127025662	127026662	+	865.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010772, intron 1 of 4)	intron (NM_010772, intron 1 of 4)	317.0	NM_010772	17188.0	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97831742-6	chr15	97831346	97832346	+	865.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204276)	promoter-TSS (NM_001204276)	-79.0	NM_001204276	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8758040-5	chr10	8757511	8758511	+	865.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	128059.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	11.0	39.0	48.0	26.0	43.0	23.0
Merged-chr18-34778277-2	chr18	34777777	34778777	+	865.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081256, intron 1 of 23)	intron (NM_001081256, intron 1 of 23)	1269.0	NM_001081256	277250.0	Mm.277906	NM_029518	ENSMUSG00000038773	Kdm3b	5830462I21Rik|JHDM2B|Jmjd1b|mKIAA1082	KDM3B lysine (K)-specific demethylase 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35115980-3	chr9	35115491	35116491	+	865.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029475)	promoter-TSS (NR_029475)	-737.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	23.5	19.5	20.0	14.5	14.0	6.5
Merged-chr2-174672690-4	chr2	174672229	174673229	+	865.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099328, intron 3 of 4)	intron (NM_001099328, intron 3 of 4)	29195.0	NM_001099328	100043757.0	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	-	zinc finger protein 831	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-13850362-4	chr17	13849856	13850856	+	865.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151731, intron 17 of 33)	B3A|SINE|B2	-88962.0	NM_022311	21646.0	Mm.486358	NM_022311	ENSMUSG00000038347	Tcte2	AI429268|Tcte-2	t-complex-associated testis expressed 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155416308-4	chr1	155415816	155416816	+	865.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011273, intron 1 of 14)	intron (NM_011273, intron 1 of 14)	1128.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56242184-4	chr17	56241667	56242667	+	865.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029827)	promoter-TSS (NR_029827)	451.0	NR_155493	320593.0	Mm.125338	NR_155493		A230051N06Rik	-	RIKEN cDNA A230051N06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30944290-4	chr16	30943792	30944792	+	865.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137140.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0.5	5.0	3.0	6.5	1.5	1.0
Merged-chr17-34093463-3	chr17	34092971	34093971	+	865.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046183, intron 2 of 4)	intron (NR_046183, intron 2 of 4)	1092.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	32.5	58.0	36.5	4.0	8.0	14.5
Merged-chr5-135487161-3	chr5	135486676	135487676	+	865.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	(CCA)n|Simple_repeat|Simple_repeat	57946.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106733994-4	chr11	106733465	106734465	+	865.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger12|DNA|TcMar-Tigger	-17261.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133131410-5	chr4	133130879	133131879	+	865.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	746.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	111.0	354.0	187.5	135.0	241.5	220.5
Merged-chr10-82857862-2	chr10	82857403	82858403	+	865.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042523, intron 1 of 14)	intron (NM_001042523, intron 1 of 14)	-1303.0	NM_001042513	50493.0	Mm.210155	NM_015762	ENSMUSG00000020250	Txnrd1	TR|TR1|TrxR1	thioredoxin reductase 1	protein-coding	3.0	7.5	2.0	8.0	5.0	3.0
Merged-chr13-12409355-4	chr13	12408860	12409860	+	865.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144835, intron 14 of 44)	intron (NM_144835, intron 14 of 44)	13985.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-15321739-1	chr10	15321239	15322239	+	865.75	f0_balb.idr	Intergenic	Intergenic	-470038.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61661007-4	chr11	61660465	61661465	+	865.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027817, intron 2 of 4)	intron (NM_027817, intron 2 of 4)	7644.0	NM_027817	71520.0	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121466646-4	chr10	121466158	121467158	+	865.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	9592.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	15.5	60.5	29.0	24.5	26.0	33.5
Merged-chr10-86655634-2	chr10	86655134	86656134	+	865.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29893.0	NR_015572	66263.0	Mm.392261	NR_015572	ENSMUSG00000097412	1810014B01Rik	-	RIKEN cDNA 1810014B01 gene	pseudo	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr19-4069153-2	chr19	4068653	4069653	+	865.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19-int|LTR|ERVK	-9706.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	2.0	1.5	0.5	0.5	2.5	4.0
Merged-chr1-95366426-4	chr1	95365929	95366929	+	865.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	52801.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111310146-4	chr9	111309648	111310648	+	865.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	-1591.0	NM_001164659	320429.0	Mm.270754	NM_001164659	ENSMUSG00000062296	Trank1	A230061D21Rik|C030048J01Rik|Gm187|Lba1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding	0.0	4.0	5.0	3.5	8.5	2.0
Merged-chr1-60609602-3	chr1	60609105	60610105	+	865.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42840.0	NM_001045513	77300.0	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	13.0	5.0	17.5	5.5	4.0	15.5
Merged-chr5-72803043-1	chr5	72802543	72803543	+	865.75	f0_balb.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	-50266.0	NM_001122754	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31373007-4	chr14	31372509	31373509	+	865.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011894, exon 9 of 9)	3' UTR (NM_011894, exon 9 of 9)	36371.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29194852-4	chr2	29194450	29195450	+	865.7261960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001305805, exon 8 of 8)	exon (NM_001305805, exon 8 of 8)	53149.0	NM_001305805	171171.0	Mm.442448	NM_133500	ENSMUSG00000035513	Ntng2	2610016D08Rik|Lmnt2	netrin G2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-8477716-3	chr8	8477228	8478228	+	865.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	183045.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-72991641-4	chr9	72991145	72992145	+	865.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359295, intron 1 of 9)	intron (NM_001359295, intron 1 of 9)	6141.0	NM_001286544	72278.0	Mm.268475	NM_028181	ENSMUSG00000034563	Ccpg1	1700030B06Rik|1810073J13Rik|9430028F23Rik|AI426686|AI875170|CPR8|D9Ertd392e	cell cycle progression 1	protein-coding	2.5	5.5	0.0	3.0	5.5	0.0
Merged-chr11-120547498-4	chr11	120546894	120547894	+	865.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033231, intron 1 of 4)	intron (NM_001033231, intron 1 of 4)	2333.0	NM_001033231	192173.0	Mm.262300	NM_001033231	ENSMUSG00000061111	Mcrip1	Fam195b	MAPK regulated corepressor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-126673561-4	chr2	126673050	126674050	+	865.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271470, intron 1 of 8)	intron (NM_001271470, intron 1 of 8)	1802.0	NM_001355109	14391.0	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-65598464-4	chr14	65597962	65598962	+	865.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5350.0	NM_028811	74195.0	Mm.29719	NM_028811	ENSMUSG00000022031	Elp3	2610507P14Rik|KAT9	elongator acetyltransferase complex subunit 3	protein-coding	4.0	0.0	0.0	4.0	1.0	0.0
Merged-chr1-180318682-4	chr1	180318208	180319208	+	865.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11768.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24529323-3	chr17	24528818	24529818	+	865.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045289)	TTS (NR_045289)	1067.0	NR_045289	75614.0	Mm.440235	NR_045289	ENSMUSG00000093565	Rab26os	2610019E17Rik	RAB26, member RAS oncogene family, opposite strand	ncRNA	4.5	18.5	4.0	4.0	6.5	5.0
Merged-chr2-101922470-1	chr2	101921970	101922970	+	865.6666869999999	f0_balb.idr	Intergenic	Intergenic	36208.0	NM_029635	76501.0	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	14.0	1.0	4.5	7.0	10.0	4.5
Merged-chr12-76371493-1	chr12	76370993	76371993	+	865.6666869999999	f0_balb.idr	intron (NM_178744, intron 1 of 1)	intron (NM_178744, intron 1 of 1)	1227.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-64517462-3	chr18	64517033	64518033	+	865.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027350)	promoter-TSS (NM_027350)	-976.0	NM_001142950	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128709420-4	chr8	128708916	128709916	+	865.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010578, intron 3 of 15)	B3|SINE|B2	23762.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57030690-2	chr16	57030190	57031190	+	865.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_I-int|LTR|ERV1	40656.0	NM_001358101	69457.0	Mm.58105	NM_183281	ENSMUSG00000046748	Tmem45a2	2310005G13Rik	transmembrane protein 45A2	protein-coding	6.5	2.5	0.0	0.0	0.0	0.0
Merged-chr12-117348763-3	chr12	117348250	117349250	+	865.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11738.0	NR_044987	432713.0	Mm.459210	NR_044987	ENSMUSG00000101930	Gm5441	-	predicted gene 5441	ncRNA	2.0	0.0	0.0	0.0	2.5	1.5
Merged-chr1-51498676-4	chr1	51498151	51499151	+	865.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-20252.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113471008-3	chr13	113470515	113471515	+	865.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 3 of 6)	intron (NR_045501, intron 3 of 6)	31829.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-99963081-3	chr11	99962584	99963584	+	865.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14609.0	NM_001085527	435286.0	Mm.457964	NM_001085527	ENSMUSG00000078255	Krtap9-5	-	keratin associated protein 9-5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-35587124-3	chr6	35586624	35587624	+	865.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-47236.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121708048-2	chr9	121707548	121708548	+	865.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2341.0	NM_026794	26901.0	Mm.24848	NM_026794	ENSMUSG00000032526	Ss18l2	1110020I04Rik|AI463209|Deb1	SS18, nBAF chromatin remodeling complex subunit like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120823304-2	chr6	120822804	120823804	+	865.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007510)	promoter-TSS (NM_007510)	-606.0	NM_007510	11973.0	Mm.29045	NM_007510	ENSMUSG00000019210	Atp6v1e1	2410029D23Rik|Atp6e|Atp6e2|Atp6v1e|D6Ertd385e|Vma4|p31	ATPase, H+ transporting, lysosomal V1 subunit E1	protein-coding	1.0	17.0	5.5	8.5	43.5	24.5
Merged-chr18-38459867-2	chr18	38459367	38460367	+	865.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 6 of 7)	B1_Mur4|SINE|Alu	40960.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44144059-2	chr9	44143559	44144559	+	865.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9401.0	NM_001359530	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	0.5	0.0	0.0	1.0	0.0	0.0
Merged-chr11-116021473-5	chr11	116020967	116021967	+	865.6333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008211)	TTS (NM_008211)	3037.0	NM_008211	15081.0	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29466604-4	chr2	29466103	29467103	+	865.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290489, intron 2 of 6)	L1MA8|LINE|L1	8691.0	NR_105753	102465170.0		NR_105753	ENSMUSG00000098539	Mir133c	Gm27865|mmu-mir-133c	microRNA 133c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60948396-4	chr2	60947881	60948881	+	865.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	14823.0	NM_020296	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-88203839-2	chr11	88203333	88204333	+	865.625	f0_balb.idr|f0_c57.idr	promoter-TSS (NR_111902)	promoter-TSS (NR_111902)	-555.0	NM_024174	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	36.0	154.5	93.5	85.5	210.5	164.5
Merged-chr11-43348844-3	chr11	43348383	43349383	+	865.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25578.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-52138328-3	chr5	52137829	52138829	+	865.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2312.0	NR_105845	102466648.0		NR_105845	ENSMUSG00000098726	Mir6417	Gm27334|mmu-mir-6417	microRNA 6417	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36220407-3	chr17	36219929	36220929	+	865.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30278.0	NM_008208	15043.0	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93485473-4	chr1	93484957	93485957	+	865.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159719, intron 1 of 12)	intron (NM_001159719, intron 1 of 12)	6396.0	NM_001159719	18000.0	Mm.428652	NM_010891	ENSMUSG00000026276	Sept2	AW208991|Nedd-5|Nedd5|mKIAA0158	septin 2	protein-coding	12.5	85.5	44.5	16.5	75.5	37.5
Merged-chr10-93487573-2	chr10	93487073	93488073	+	865.583374	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-1195.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	10.5	2.5	7.0	10.0	1.5	25.5
Merged-chr8-104219992-4	chr8	104219474	104220474	+	865.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001141922)	TTS (NM_001141922)	28584.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65641916-3	chr17	65641414	65642414	+	865.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146002, intron 1 of 2)	intron (NM_001146002, intron 1 of 2)	290.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53349112-4	chr15	53348605	53349605	+	865.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA8|LINE|L1	-2922.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75231544-2	chr10	75231044	75232044	+	865.5750119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_153406, intron 2 of 15)	intron (NM_153406, intron 2 of 15)	19154.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47738555-5	chr17	47738150	47739150	+	865.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	719.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	5.0	10.0	7.0	0.0	10.0	9.5
Merged-chr2-30719082-4	chr2	30718577	30719577	+	865.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2133.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-75709229-10	chr13	75708761	75709761	+	865.5599980000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138953, intron 1 of 11)	intron (NM_138953, intron 1 of 11)	1777.0	NM_138953	192657.0	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	3.0	3.5	0.0	2.0	3.0	2.5
Merged-chr15-30646835-4	chr15	30646313	30647313	+	865.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008729, exon 7 of 23)	exon (NM_008729, exon 7 of 23)	-392313.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	5.5	0.0	2.0	5.5	0.0	0.0
Merged-chr11-50149643-6	chr11	50149081	50150081	+	865.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029745, intron 6 of 20)	intron (NM_029745, intron 6 of 20)	18221.0	NM_029745	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-107967056-4	chr5	107966548	107967548	+	865.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	intron (NM_026062, intron 1 of 4)	20029.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	2.5	12.0	12.5	7.5	11.0	11.5
Merged-chr12-95738312-4	chr12	95737793	95738793	+	865.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	46067.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68176496-3	chr10	68175997	68176997	+	865.511108	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 4 of 9)	intron (NM_023598, intron 4 of 9)	102229.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	2.0	7.0	3.5	0.0	6.0	4.0
Merged-chr19-36922250-3	chr19	36921742	36922742	+	865.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2643.0	NM_028263	72514.0	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33719542-2	chr17	33719040	33720040	+	865.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145486)	promoter-TSS (NM_145486)	-863.0	NR_045522	224703.0	Mm.311439	NM_145486	ENSMUSG00000079557	March2	9530046H09Rik|MARCH-II	membrane-associated ring finger (C3HC4) 2	protein-coding	4.5	5.0	6.5	0.0	0.0	5.0
Merged-chr17-88528011-3	chr17	88527508	88528508	+	865.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2116.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	0.0	2.0	0.0	3.0	2.0	1.5
Merged-chr6-115677805-2	chr6	115677305	115678305	+	865.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152134, exon 1 of 1)	non-coding (NR_152134, exon 1 of 1)	-1170.0	NM_029780	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97590759-2	chr3	97590259	97591259	+	865.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026539, intron 8 of 22)	intron (NM_026539, intron 8 of 22)	19431.0	NM_026539	68058.0	Mm.31761	NM_026539	ENSMUSG00000028089	Chd1l	4432404A22Rik|Alc1|Snf2p	chromodomain helicase DNA binding protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28181409-2	chr17	28180909	28181909	+	865.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172617, intron 2 of 14)	intron (NM_172617, intron 2 of 14)	3991.0	NM_172617	224656.0	Mm.267359	NM_172617	ENSMUSG00000024220	Zfp523	2810027J07|BC025615|Znf76	zinc finger protein 523	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129306682-4	chr2	129306194	129307194	+	865.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040371, exon 5 of 5)	non-coding (NR_040371, exon 5 of 5)	3278.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	9.5	20.5	25.5	6.5	22.0	17.0
Merged-chr15-76900304-2	chr15	76899804	76900804	+	865.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025536, intron 1 of 1)	intron (NM_025536, intron 1 of 1)	363.0	NM_025536	66398.0	Mm.291716	NM_025536	ENSMUSG00000055041	Commd5	2310065H03Rik|AI854466|D15Ertd81e|Hcarg	COMM domain containing 5	protein-coding	4.5	9.0	25.0	11.5	19.5	21.0
Merged-chr11-117877269-2	chr11	117876769	117877769	+	865.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3743.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-57237242-2	chr2	57236742	57237742	+	865.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145820)	promoter-TSS (NM_001145820)	-436.0	NM_001145820	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85525202-2	chr12	85524702	85525702	+	865.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTRETN_Mm|LTR|ERVK	51312.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88652183-2	chr17	88651683	88652683	+	865.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16477.0	NM_023630	71828.0	Mm.61330	NM_023630	ENSMUSG00000024154	Gtf2a1l	1700011N16Rik|Alf|Gtf2a1lf	general transcription factor IIA, 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-46864576-2	chr14	46864076	46865076	+	865.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18389.0	NM_028966	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	27.5	50.5	36.0	2.0	8.0	19.5
Merged-chr3-88835140-3	chr3	88834653	88835653	+	865.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001242372)	promoter-TSS (NM_001242372)	-78.0	NM_027389	76022.0	Mm.126870	NM_027389	ENSMUSG00000054199	Gon4l	1500041I23Rik|2610100B20Rik|3632445O20Rik|5430404N14Rik|AA387005	gon-4-like (C.elegans)	protein-coding	12.5	47.5	12.5	0.0	0.0	0.0
Merged-chr15-35918145-2	chr15	35917645	35918645	+	865.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177151, intron 58 of 61)	intron (NM_177151, intron 58 of 61)	20101.0	NM_053071	12864.0	Mm.548	NM_053071	ENSMUSG00000014313	Cox6c	-	cytochrome c oxidase subunit VIc	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-24381697-2	chr1	24381160	24382160	+	865.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007733, intron 15 of 50)	L1MB2|LINE|L1	186457.0	NM_001290691	12839.0	Mm.154662	NM_007740	ENSMUSG00000026147	Col9a1	Col9a-1	collagen, type IX, alpha 1	protein-coding	1.0	1.0	0.5	1.5	0.0	0.0
Merged-chr15-99233276-2	chr15	99232776	99233776	+	865.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010601, exon 9 of 15)	exon (NM_010601, exon 9 of 15)	8300.0	NM_010601	16512.0	Mm.374793	NM_010601	ENSMUSG00000037579	Kcnh3	AU019351|C030044P22Rik|Elk2|Kv12.2|Melk2	potassium voltage-gated channel, subfamily H (eag-related), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-136065897-1	chr7	136065397	136066397	+	865.5	f0_balb.idr	Intergenic	Intergenic	-202427.0	NR_102277	77383.0	Mm.227745	NR_102277	ENSMUSG00000110027	C030029H02Rik	-	RIKEN cDNA C030029H02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87300399-2	chr17	87299899	87300899	+	865.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 3 of 19)	intron (NM_028639, intron 3 of 19)	17513.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101464452-4	chr11	101463956	101464956	+	865.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012037, intron 1 of 5)	intron (NM_012037, intron 1 of 5)	1743.0	NM_012037	26949.0	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88645979-2	chr3	88645491	88646491	+	865.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 20 of 21)	intron (NM_001198913, intron 20 of 21)	7151.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	5.5	3.0	10.0	8.0	0.5	10.5
Merged-chr10-122574423-2	chr10	122574010	122575010	+	865.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4619.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	10.5	20.0	20.5	5.5	6.5	16.0
Merged-chr1-135154605-4	chr1	135154102	135155102	+	865.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026823, intron 5 of 6)	intron (NM_026823, intron 5 of 6)	7768.0	NM_026823	68724.0	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20469441-4	chr11	20468954	20469954	+	865.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73799.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	11.5	52.0	29.0	13.0	37.0	24.5
Merged-chr17-24209104-5	chr17	24208584	24209584	+	865.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010947, exon 1 of 6)	5' UTR (NM_010947, exon 1 of 6)	303.0	NM_010947	18209.0	Mm.259542	NM_010947	ENSMUSG00000036473	Ntn3	Ntn2l	netrin 3	protein-coding	0.0	0.0	3.0	0.0	0.0	0.5
Merged-chr10-125325301-4	chr10	125324810	125325810	+	865.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 1 of 5)	ORR1F|LTR|ERVL-MaLR	3653.0	NM_011391	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155402154-3	chr2	155401616	155402616	+	865.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019825, intron 11 of 13)	intron (NM_019825, intron 11 of 13)	20260.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	17.0	13.0	9.0	9.0	5.0	3.0
Merged-chr9-78586987-3	chr9	78586462	78587462	+	865.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172773, intron 1 of 10)	intron (NM_172773, intron 1 of 10)	1083.0	NM_172773	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40659171-3	chr19	40658664	40659664	+	865.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009848)	promoter-TSS (NM_009848)	-606.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.0	4.0	4.0	4.5	7.5	3.5
Merged-chr3-89428104-3	chr3	89427594	89428594	+	865.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011368, intron 12 of 12)	intron (NM_011368, intron 12 of 12)	-2120.0	NM_001293766	68911.0	Mm.22521	NM_026869	ENSMUSG00000047824	Pygo2	1190004M21Rik	pygopus 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141031226-2	chr4	141030726	141031726	+	865.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145958, intron 19 of 35)	intron (NM_001145958, intron 19 of 35)	20589.0	NM_008546	17150.0	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80201223-3	chr7	80200725	80201725	+	865.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	2784.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	3.5	9.5	7.0	4.5	24.0	6.5
Merged-chr6-57823666-4	chr6	57823171	57824171	+	865.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 1 of 4)	intron (NM_146168, intron 1 of 4)	1454.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-149426540-4	chr3	149426034	149427034	+	865.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	151797.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.0	5.0	2.5	3.5	3.0	2.0
Merged-chr10-29357681-4	chr10	29357136	29358136	+	865.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284279)	promoter-TSS (NM_001284279)	77.0	NM_001284279	68031.0	Mm.28930	NM_026518	ENSMUSG00000038876	Rnf146	2610509H23Rik|Iduna	ring finger protein 146	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110628484-2	chr7	110627984	110628984	+	865.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_009627, intron 2 of 3)	intron (NM_009627, intron 2 of 3)	827.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148497824-3	chr4	148497332	148498332	+	865.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039554, intron 2 of 4)	intron (NM_001039554, intron 2 of 4)	2630.0	NM_001039554	654812.0	Mm.388929	NM_001039554	ENSMUSG00000028989	Angptl7	-	angiopoietin-like 7	protein-coding	0.0	6.5	3.5	4.5	4.0	8.5
Merged-chr3-8619665-3	chr3	8619250	8620250	+	865.357178	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-8301.0	NR_153352	102635065.0		NR_153352	ENSMUSG00000104102	Gm32496	-	predicted gene, 32496	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-18568760-4	chr8	18568257	18569257	+	865.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26374.0	NM_173189	244329.0	Mm.235296	NM_173189	ENSMUSG00000039842	Mcph1	5430437K10Rik|BRIT1|D030046N04Rik|MCT|Tg(HLA-A2.1)1Enge	microcephaly, primary autosomal recessive 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104371300-3	chr8	104370793	104371793	+	865.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153582, intron 1 of 3)	B1_Mur4|SINE|Alu	24514.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127945472-3	chr10	127944951	127945951	+	865.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46916.0	NM_027301	70061.0	Mm.158320	NM_027301	ENSMUSG00000040127	Sdr9c7	1810054F20Rik|Rdh20|Rdhs|SDR-O|Sdro	4short chain dehydrogenase/reductase family 9C, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82348339-3	chr15	82347864	82348864	+	865.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026914, intron 2 of 2)	intron (NM_026914, intron 2 of 2)	2318.0	NM_026914	69029.0	Mm.260042	NM_026914	ENSMUSG00000022452	Smdt1	1500032L24Rik|Emre	single-pass membrane protein with aspartate rich tail 1	protein-coding	1.0	9.0	4.5	0.0	4.0	1.5
Merged-chr11-96407926-3	chr11	96407416	96408416	+	865.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42158.0	NM_008266	15407.0	Mm.890	NM_008266	ENSMUSG00000018973	Hoxb1	Hox-2.9	homeobox B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67689659-5	chr10	67689151	67690151	+	865.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117692.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-100505972-3	chr9	100505541	100506541	+	865.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010878, intron 2 of 3)	intron (NM_010878, intron 2 of 3)	815.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	83.5	173.5	135.0	95.5	222.0	99.5
Merged-chr2-150451520-3	chr2	150451016	150452016	+	865.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310645)	promoter-TSS (NM_001310645)	-15.0	NM_001310645	668923.0	Mm.393876	NM_001177550	ENSMUSG00000068130	Zfp442	ZIPO-II	zinc finger protein 442	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12462012-1	chr13	12461512	12462512	+	865.3333130000001	f0_balb.idr	promoter-TSS (NM_018886)	promoter-TSS (NM_018886)	-274.0	NM_001291057	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117157236-3	chr8	117156731	117157731	+	865.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081151)	promoter-TSS (NM_001081151)	-904.0	NM_001081151	209239.0	Mm.132992	NM_001081151	ENSMUSG00000052557	Gan	A330045G18|gigaxonin	giant axonal neuropathy	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-83407972-3	chr4	83407431	83408431	+	865.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS4|LTR|ERV1	-9793.0	NR_152449	77634.0	Mm.271985	NM_029949	ENSMUSG00000028483	Snapc3	1810020H02Rik|4930558A07Rik|5031401C21Rik|AI414457|E030018J20Rik	small nuclear RNA activating complex, polypeptide 3	protein-coding	0.0	1.0	2.0	2.5	7.0	4.0
Merged-chr2-36243871-3	chr2	36243300	36244300	+	865.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 8 of 10)	intron (NM_008969, intron 8 of 10)	13374.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-114452919-4	chr8	114452424	114453424	+	865.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019573, intron 4 of 8)	intron (NM_019573, intron 4 of 8)	13272.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-122997154-3	chr4	122996607	122997607	+	865.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008506, intron 1 of 1)	intron (NM_008506, intron 1 of 1)	1176.0	NM_008506	16918.0	Mm.1055	NM_008506	ENSMUSG00000028654	Mycl	AW536278|L-myc|Lmyc-1|Lmyc1|Mycl1|bHLHe38	v-myc avian myelocytomatosis viral oncogene lung carcinoma derived	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117328905-3	chr8	117328401	117329401	+	865.31665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-20269.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-43381464-4	chr16	43380960	43381960	+	865.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	38736.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101883262-3	chr7	101882777	101883777	+	865.288879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291353, intron 1 of 5)	intron (NM_001291353, intron 1 of 5)	1952.0	NM_001291353	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-22923615-3	chr5	22923105	22924105	+	865.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359998, intron 1 of 3)	intron (NM_001359998, intron 1 of 3)	-176721.0	NR_027362	330052.0	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	9.5	15.0	9.0	4.0	6.5	0.5
Merged-chr10-40489249-3	chr10	40488738	40489738	+	865.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81124.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96284633-3	chr3	96284136	96285136	+	865.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010186, intron 5 of 5)	intron (NM_010186, intron 5 of 5)	9333.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	2.0	7.5	1.5	2.0	7.5	1.5
Merged-chr5-65515050-4	chr5	65514478	65515478	+	865.261902	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22143.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57292435-4	chr17	57291931	57292931	+	865.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 1 of 25)	B4A|SINE|B4	13331.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-15590901-4	chr3	15590398	15591398	+	865.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15833.0	NM_001173460	668101.0	Mm.423523	NM_001173460	ENSMUSG00000095028	Sirpb1b	-	signal-regulatory protein beta 1B	protein-coding	8.5	17.5	10.5	14.0	10.0	11.5
Merged-chr15-101283356-4	chr15	101282854	101283854	+	865.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026566)	promoter-TSS (NM_026566)	-947.0	NM_026566	68118.0	Mm.482360	NM_026566	ENSMUSG00000037204	Atg101	9430023L20Rik|AA407441|AU022967	autophagy related 101	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98877174-2	chr7	98876674	98877674	+	865.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38329.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-130430011-6	chr1	130429504	130430504	+	865.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151525, intron 2 of 3)	RLTR13D5|LTR|ERVK	-6961.0	NM_001317361	13137.0	Mm.436759	NM_007827	ENSMUSG00000026401	Cd55b	AI323748|Daf|Daf-TM|Daf2|TM-DAF	CD55 molecule, decay accelerating factor for complement B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103535860-4	chr14	103535341	103536341	+	865.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022886, intron 4 of 30)	intron (NM_022886, intron 4 of 30)	22500.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55594150-3	chr1	55593657	55594657	+	865.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	L1_Mus2|LINE|L1	188211.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	1.0	8.0	4.5	2.5	17.5	2.5
Merged-chr2-130529585-3	chr2	130529105	130530105	+	865.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355161, intron 7 of 21)	intron (NM_001355161, intron 7 of 21)	34144.0	NR_040348	321014.0	Mm.442588	NR_040348	ENSMUSG00000060029	4930473A02Rik	-	RIKEN cDNA 4930473A02 gene	ncRNA	10.0	5.0	10.0	29.5	17.0	14.0
Merged-chr5-135118635-4	chr5	135118135	135119135	+	865.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152882, intron 2 of 16)	intron (NR_152882, intron 2 of 16)	11744.0	NR_152882	58805.0	Mm.34213	NM_021455	ENSMUSG00000005373	Mlxipl	ChREBP|Mlx|WS-bHLH|Wbscr14|bHLHd14	MLX interacting protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23969433-4	chr17	23968928	23969928	+	865.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	5802.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	0.5	0.0	2.0	2.0	0.0	3.5
Merged-chr15-84324701-4	chr15	84324163	84325163	+	865.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022321)	promoter-TSS (NM_022321)	-57.0	NM_022321	64099.0	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20978997-4	chr9	20978543	20979543	+	865.2062380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2250.0	NM_010333	14739.0	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30940135-2	chr16	30939635	30940635	+	865.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	141297.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24973216-4	chr16	24972739	24973739	+	865.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 11 of 12)	intron (NM_178665, intron 11 of 12)	-86400.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9493448-4	chr18	9492957	9493957	+	865.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43303.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118797786-3	chr7	118797277	118798277	+	865.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027815, intron 19 of 30)	intron (NM_027815, intron 19 of 30)	57506.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	77.5	272.5	191.0	77.5	253.5	178.0
Merged-chr11-49103467-3	chr11	49102964	49103964	+	865.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10293.0	NM_146337	258334.0	Mm.390388	NM_146337	ENSMUSG00000047511	Olfr1396	MOR276-2	olfactory receptor 1396	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31662192-4	chr14	31661702	31662702	+	865.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025295, exon 2 of 4)	exon (NM_025295, exon 2 of 4)	21145.0	NM_025295	26363.0	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-12184604-3	chr5	12184080	12185080	+	865.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	-198586.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81767226-3	chr13	81766703	81767703	+	865.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie8|DNA|hAT-Charlie	-16044.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-26658229-2	chr19	26657729	26658729	+	865.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011416, intron 9 of 32)	MTD|LTR|ERVL-MaLR	53069.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-149126854-2	chr6	149126354	149127354	+	865.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-14659.0	NM_001252096	320204.0	Mm.274099	NM_177101	ENSMUSG00000039958	Etfbkmt	4833442J19Rik|AI256744|ETFB-KMT|Mettl20	electron transfer flavoprotein beta subunit lysine methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115272070-3	chr5	115271474	115272474	+	865.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302449, intron 1 of 16)	MIRc|SINE|MIR	921.0	NM_001302448	50849.0	Mm.30051	NM_016698	ENSMUSG00000041740	Rnf10	AA675014|RIE2|mKIAA0262	ring finger protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81546024-2	chr10	81545524	81546524	+	865.125	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010301)	promoter-TSS (NM_010301)	-978.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99062730-4	chr9	99062234	99063234	+	865.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 14 of 23)	intron (NM_029094, intron 14 of 23)	-27044.0	NM_001080776	382097.0	Mm.293727	NM_001080776	ENSMUSG00000044860	Gm1123	AV052824|CLSP	predicted gene 1123	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-18823613-4	chr15	18823115	18824115	+	865.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009865, intron 1 of 11)	intron (NM_009865, intron 1 of 11)	3286.0	NM_009865	320873.0	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-78733585-3	chr14	78733045	78734045	+	865.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081336)	promoter-TSS (NM_001081336)	-816.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104672236-3	chr3	104671745	104672745	+	865.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33581.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118902551-6	chr2	118902013	118903013	+	865.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045523, intron 1 of 6)	CpG	898.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53479666-3	chr19	53479156	53480156	+	865.0888669999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-14860.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	1.5	1.5	1.0	0.0	1.5	2.0
Merged-chr1-171501634-3	chr1	171501143	171502143	+	865.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1835.0	NM_019484	56009.0	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	6.0	2.0	4.5	1.5	6.0	0.0
Merged-chr13-112510573-3	chr13	112510066	112511066	+	865.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46496.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	6.0	0.0	0.0	0.0	3.5	0.5
Merged-chr10-121498097-4	chr10	121497597	121498597	+	865.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21847.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	80.0	167.5	108.5	52.5	145.5	120.0
Merged-chr5-99977773-9	chr5	99977116	99978116	+	865.074097	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077265, intron 1 of 8)	intron (NM_001077265, intron 1 of 8)	1322.0	NM_001077266	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-118097596-3	chr5	118097097	118098097	+	865.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172721, intron 5 of 10)	intron (NM_172721, intron 5 of 10)	57861.0	NM_172721	231672.0	Mm.221769	NM_172721	ENSMUSG00000032867	Fbxw8	4930438M06Rik|FBW6|FBW8|FBXO29|Fbx29	F-box and WD-40 domain protein 8	protein-coding	2.0	0.0	0.5	0.0	0.0	1.5
Merged-chr11-8497288-4	chr11	8496794	8497794	+	865.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 16 of 30)	intron (NM_001083587, intron 16 of 30)	167241.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-38141963-4	chr7	38141481	38142481	+	865.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34491.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	1.0	4.0	1.0	4.5	0.0	0.0
Merged-chr19-9986073-8	chr19	9985610	9986610	+	865.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010239)	TTS (NM_010239)	3464.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	9.5	27.0	6.5	6.5	34.0	16.0
Merged-chr6-142698154-4	chr6	142697663	142698663	+	865.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001044720, intron 2 of 39)	intron (NM_001044720, intron 2 of 39)	4111.0	NM_021041	20928.0	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75167509-4	chr11	75166971	75167971	+	865.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001098203, exon 2 of 2)	exon (NM_001098203, exon 2 of 2)	681.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	1.0	13.0	25.5	27.0	12.5	9.5
Merged-chr6-24955270-6	chr6	24954761	24955761	+	865.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177013, exon 1 of 1)	exon (NM_177013, exon 1 of 1)	864.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141461945-5	chr7	141461457	141462457	+	865.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152220, exon 2 of 2)	non-coding (NR_152220, exon 2 of 2)	863.0	NM_001025103	213573.0	Mm.386851	NM_001025103	ENSMUSG00000048200	Cracr2b	6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a	calcium release activated channel regulator 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99264680-5	chr10	99264179	99265179	+	865.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026268, exon 2 of 3)	exon (NM_026268, exon 2 of 3)	1448.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171240162-2	chr1	171239660	171240660	+	865.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153064, intron 3 of 12)	intron (NM_153064, intron 3 of 12)	-5811.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	17.5	29.0	15.5	5.5	14.0	18.0
Merged-chr2-129600611-2	chr2	129600111	129601111	+	865.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355160, intron 1 of 7)	L2a|LINE|L2	5149.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	23.5	45.0	39.0	22.5	53.0	36.5
Merged-chr10-77615028-2	chr10	77614523	77615523	+	865.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301672, intron 3 of 3)	B1_Mus1|SINE|Alu	1314.0	NR_125903	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134273558-1	chr4	134273058	134274058	+	865.0	f0_balb.idr	Intergenic	Intergenic	13695.0	NM_001163794	230809.0	Mm.22778	NM_146156	ENSMUSG00000050890	Pdik1l	BC027088|stk35l2	PDLIM1 interacting kinase 1 like	protein-coding	3.0	1.0	2.0	7.5	5.0	14.5
Merged-chr2-18874067-2	chr2	18873567	18874567	+	865.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355147, intron 3 of 8)	intron (NM_001355147, intron 3 of 8)	-72249.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114880624-6	chr11	114880035	114881035	+	865.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9506.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147423728-2	chr4	147423228	147424228	+	865.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	B4A|SINE|B4	-129549.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67535557-4	chr10	67535040	67536040	+	865.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2329.0	NM_010118	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-69076472-4	chr17	69076010	69077010	+	865.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355732, intron 1 of 21)	CpG	833.0	NM_001355732	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107762940-4	chr13	107762450	107763450	+	865.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	75553.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90100931-2	chr9	90100431	90101431	+	865.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039147, intron 5 of 12)	B2_Mm2|SINE|B2	13889.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-75817153-1	chr13	75816653	75817653	+	865.0	f1_c57bl6.idr	Intergenic	Intergenic	-22732.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	3.5	4.5	0.0	0.0	0.5	0.5
Merged-chr10-122891672-2	chr10	122891172	122892172	+	865.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 6 of 9)	intron (NM_001110218, intron 6 of 9)	94052.0	NR_029527	387251.0		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97839618-3	chr11	97839115	97840115	+	865.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010688)	TTS (NM_010688)	-1165.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	19.0	22.5	19.5	1.0	5.0	8.0
Merged-chr3-10247325-2	chr3	10246825	10247825	+	865.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357159, intron 4 of 4)	intron (NM_001357159, intron 4 of 4)	6900.0	NM_001357161	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25356020-2	chr15	25355520	25356520	+	865.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57744.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-100439574-3	chr9	100439079	100440079	+	865.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46894.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	0.0	0.0	2.0	1.0	4.0	6.5
Merged-chr7-92979595-2	chr7	92979095	92980095	+	865.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-100284.0	NM_021427	58238.0	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-7911186-3	chr17	7910690	7911690	+	865.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-14810.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89146742-2	chr15	89146242	89147242	+	865.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011161, exon 2 of 12)	exon (NM_011161, exon 2 of 12)	2864.0	NM_011161	19094.0	Mm.91969	NM_011161	ENSMUSG00000053137	Mapk11	P38b|Prkm11|Sapk2|Sapk2b|p38-2|p38beta|p38beta2	mitogen-activated protein kinase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20727934-4	chr9	20727435	20728435	+	865.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357635)	promoter-TSS (NM_001357635)	294.0	NM_173777	244723.0	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35076141-4	chr12	35075640	35076640	+	865.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	28951.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	57.0	125.5	93.0	11.0	40.5	23.0
Merged-chr15-31648228-3	chr15	31647668	31648668	+	865.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR78|LTR|ERV1	46052.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31180334-2	chr6	31179834	31180834	+	865.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	38140.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115213269-1	chr11	115212769	115213769	+	865.0	f1_c57bl6.idr	intron (NM_001033393, intron 8 of 9)	MTC|LTR|ERVL-MaLR	25782.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	5.5	10.0	0.0	0.0	0.0	1.0
Merged-chr16-33416470-4	chr16	33415967	33416967	+	865.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358569, intron 1 of 8)	RLTR40|LTR|ERVK	16022.0	NM_001358569	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122453998-3	chr7	122453503	122454503	+	865.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 3 of 16)	intron (NM_001316672, intron 3 of 16)	164878.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81143607-2	chr10	81143107	81144107	+	865.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010731, intron 1 of 2)	intron (NM_010731, intron 1 of 2)	7336.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-31811977-2	chr13	31811477	31812477	+	865.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	5331.0	NM_008592	17300.0	Mm.12949	NM_008592	ENSMUSG00000050295	Foxc1	FREAC3|Fkh1|Mf1|Mf4|ch|fkh-1|frkhda	forkhead box C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81171476-2	chr10	81170976	81171976	+	865.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-3756.0	NM_021501	59004.0	Mm.34428	NM_021501	ENSMUSG00000004934	Pias4	PIASY|Pias-gamma|Piasg	protein inhibitor of activated STAT 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-51644524-2	chr1	51644022	51645022	+	865.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47804.0	NR_151621	100045066.0	Mm.404734	NR_151621		Gm17767	-	predicted gene, 17767	ncRNA	10.0	19.5	1.0	6.5	2.5	2.0
Merged-chr5-32141402-2	chr5	32140902	32141902	+	865.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008037, intron 1 of 3)	intron (NM_008037, intron 1 of 3)	4930.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135768387-3	chr7	135767895	135768895	+	865.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52016.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-13560061-2	chr2	13559561	13560561	+	865.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-14250.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-167207659-2	chr1	167207159	167208159	+	865.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	77468.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36559084-2	chr1	36558584	36559584	+	865.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001126047)	promoter-TSS (NM_001126047)	-703.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-150665035-3	chr5	150664567	150665567	+	865.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362416, intron 1 of 7)	intron (NM_001362416, intron 1 of 7)	545.0	NM_001362416	381695.0	Mm.246934	NM_201369	ENSMUSG00000029655	N4bp2l2	2700092H06Rik|Gm38758|zag1	NEDD4 binding protein 2-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116850250-3	chr11	116849762	116850762	+	865.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028865)	TTS (NM_028865)	2832.0	NM_011358	20382.0	Mm.21841	NM_011358	ENSMUSG00000034120	Srsf2	D11Wsu175e|MRF-1|Pr264|SC35|Sfrs10|Sfrs2	serine/arginine-rich splicing factor 2	protein-coding	0.0	41.0	4.5	0.0	25.0	5.5
Merged-chr1-63182943-2	chr1	63182443	63183443	+	865.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_146250, exon 3 of 3)	3' UTR (NM_146250, exon 3 of 3)	3920.0	NR_028558	100217464.0	Mm.484706	NR_028558	ENSMUSG00000064602	Snora41	MBI-83	small nucleolar RNA, H/ACA box 41	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-39309415-3	chr8	39308963	39309963	+	865.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_044988, intron 2 of 3)	intron (NR_044988, intron 2 of 3)	11483.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	10.0	11.0	2.5	26.5	16.0	28.0
Merged-chr17-13568744-1	chr17	13568244	13569244	+	865.0	f1_balb.idr	Intergenic	Intergenic	-14650.0	NR_045437	72578.0	Mm.46549	NR_045436	ENSMUSG00000038347	2700054A10Rik	-	RIKEN cDNA 2700054A10 gene	ncRNA	0.0	0.5	1.0	0.0	2.5	1.5
Merged-chr2-166468121-2	chr2	166467621	166468621	+	865.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B1|LTR|ERVL	20670.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81193252-3	chr10	81192743	81193743	+	865.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007828)	TTS (NM_007828)	-1448.0	NR_015477	69678.0	Mm.81562	NR_015477		Atcayos	2310050B05Rik	ataxia, cerebellar, Cayman type, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82763492-2	chr18	82762992	82763992	+	865.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	-4453.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88140120-3	chr3	88139657	88140657	+	865.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2215.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-61563397-2	chr2	61562897	61563897	+	865.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15189.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86657994-2	chr6	86657494	86658494	+	865.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010751, intron 3 of 5)	intron (NM_010751, intron 3 of 5)	11165.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	3.5	0.0	7.0	3.5	0.0	4.5
Merged-chr19-3927121-2	chr19	3926621	3927621	+	865.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026316, intron 1 of 9)	intron (NM_026316, intron 1 of 9)	2595.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-98045990-2	chr3	98045490	98046490	+	865.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	32452.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34180711-4	chr17	34180196	34181196	+	864.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6634.0	NM_013585	16912.0	Mm.390983	NM_013585	ENSMUSG00000096727	Psmb9	Lmp-2|Lmp2	proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	protein-coding	2.0	4.0	3.0	2.5	2.5	1.0
Merged-chr13-37486462-3	chr13	37485949	37486949	+	864.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	141104.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	3.5	0.5	0.5	19.0	1.0	3.0
Merged-chr7-102233045-4	chr7	102232527	102233527	+	864.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111937, intron 2 of 5)	B2_Mm2|SINE|B2	9999.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	4.5	3.0	4.5	10.0	19.0	6.5
Merged-chr17-48931932-4	chr17	48931433	48932433	+	864.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027452)	promoter-TSS (NM_027452)	-649.0	NM_027452	70530.0	Mm.133607	NM_027452	ENSMUSG00000040490	Lrfn2	5730420O05Rik|SALM1|mKIAA1246	leucine rich repeat and fibronectin type III domain containing 2	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr6-50601816-3	chr6	50601301	50602301	+	864.922241	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5211.0	NM_027564	70821.0	Mm.157323	NM_027564	ENSMUSG00000029828	4921507P07Rik	TISP74	RIKEN cDNA 4921507P07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133176203-4	chr4	133175711	133176711	+	864.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	-19444.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	60.5	117.0	93.0	35.5	114.0	107.5
Merged-chr16-85175030-2	chr16	85174538	85175538	+	864.9166869999999	f0_balb.idr|f1_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1331.0	NM_001198826	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	9.0	4.0	3.0	6.5	11.0	5.5
Merged-chr3-89386963-2	chr3	89386463	89387463	+	864.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355206, intron 1 of 3)	intron (NM_001355206, intron 1 of 3)	708.0	NM_001355212	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118168450-2	chr11	118167908	118168908	+	864.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 12 of 12)	intron (NM_001112700, intron 12 of 12)	-39189.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161036583-2	chr1	161036043	161037043	+	864.916626	f1_balb.idr|f1_c57bl6.idr	intron (NR_153815, intron 4 of 8)	intron (NR_153815, intron 4 of 8)	-1549.0	NR_028543	100217446.0		NR_028543	ENSMUSG00000064968	Snord47	MBII-96	small nucleolar RNA, C/D box 47	snoRNA	28.0	72.5	43.5	22.5	87.0	46.0
Merged-chr4-134124235-7	chr4	134123713	134124713	+	864.914307	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045571, intron 10 of 13)	intron (NR_045571, intron 10 of 13)	4540.0	NM_080559	73723.0	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143052059-3	chr5	143051575	143052575	+	864.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	60945.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124916060-4	chr6	124915554	124916554	+	864.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152158)	promoter-TSS (NR_152158)	-809.0	NR_152158	442825.0	Mm.446713	NR_152158	ENSMUSG00000055818	A230083G16Rik	-	RIKEN cDNA A230083G16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4140259-4	chr8	4139745	4140745	+	864.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5509.0	NM_027343	70192.0	Mm.390006	NM_027343	ENSMUSG00000079168	Cd209g	2310066I10Rik|AI481039|SIGNR7	CD209g antigen	protein-coding	11.0	2.5	1.5	1.0	0.0	1.5
Merged-chr5-43423213-4	chr5	43422713	43423713	+	864.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92356.0	NM_001135172	109323.0	Mm.275553	NM_175425	ENSMUSG00000061535	C1qtnf7	5530401N20Rik|8430425G24Rik|Ctrp7	C1q and tumor necrosis factor related protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70039663-2	chr11	70039163	70040163	+	864.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007864, intron 10 of 19)	intron (NM_007864, intron 10 of 19)	-14461.0	NM_001291131	11889.0	Mm.6559	NM_009714	ENSMUSG00000020884	Asgr1	ASGPR1|Asgr|Asgr-1|HL-1	asialoglycoprotein receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65937125-3	chr5	65936637	65937637	+	864.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-29987.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-49978662-4	chr18	49978137	49979137	+	864.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177760)	promoter-TSS (NM_001177760)	-790.0	NM_001177760	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0.0	1.0	0.0	5.0	0.0	0.0
Merged-chr15-72833728-6	chr15	72833166	72834166	+	864.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164641, intron 17 of 17)	L2|LINE|L2	-23342.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0.0	10.5	12.0	13.5	3.5	5.0
Merged-chr12-75638530-3	chr12	75638034	75639034	+	864.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028203, intron 1 of 1)	Lx7|LINE|L1	-6785.0	NR_038063	665931.0	Mm.341719	NR_038063		Rplp2-ps1	Gm7852	ribosomal protein, large P2, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45940303-6	chr4	45939844	45940844	+	864.819458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198660, intron 30 of 37)	intron (NM_198660, intron 30 of 37)	-24991.0	NM_001290475	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	0.0	0.0	0.5	0.0	0.0	2.0
Merged-chr15-6581089-4	chr15	6580560	6581560	+	864.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011815, intron 1 of 17)	intron (NM_011815, intron 1 of 17)	1213.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54090494-2	chr11	54089994	54090994	+	864.7999880000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORSL-2a|DNA|hAT-Tip100	-10430.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110813270-4	chr12	110812763	110813763	+	864.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011973, intron 7 of 11)	intron (NM_011973, intron 7 of 11)	27676.0	NM_011973	26448.0	Mm.140948	NM_011973	ENSMUSG00000056458	Mok	RAGE1|Rage|Stk30	MOK protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12518027-4	chr19	12517528	12518528	+	864.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16032.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	1.0	5.5	7.0	3.0	6.0	2.0
Merged-chr6-3590514-3	chr6	3590015	3591015	+	864.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167751, intron 22 of 26)	intron (NM_001167751, intron 22 of 26)	92122.0	NM_001167750	73288.0	Mm.45539	NM_024260	ENSMUSG00000001376	Vps50	1700034M03Rik|8430415E05Rik|BLM|C87205|Ccdc132|mKIAA1861	VPS50 EARP/GARPII complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-33148019-3	chr4	33147556	33148556	+	864.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008075, intron 2 of 9)	B3|SINE|B2	15500.0	NM_008075	14408.0	Mm.14116	NM_008075	ENSMUSG00000028280	Gabrr1	GABA-C	gamma-aminobutyric acid (GABA) C receptor, subunit rho 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117166638-3	chr11	117166143	117167143	+	864.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33018.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-78256192-3	chr4	78255593	78256593	+	864.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44198.0	NM_011211	19266.0	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	6.5	0.0	1.5	0.0	0.5	1.0
Merged-chr10-8513435-4	chr10	8512922	8513922	+	864.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 1 of 7)	intron (NM_177387, intron 1 of 7)	5403.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145806836-4	chr6	145806348	145807348	+	864.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1535.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125489026-3	chr8	125488518	125489518	+	864.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 3 of 21)	intron (NM_001357372, intron 3 of 21)	3815.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	22.0	17.0	14.5	27.0	46.5	17.5
Merged-chr11-95117200-2	chr11	95116700	95117700	+	864.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2917.0	NM_010055	13393.0	Mm.5194	NM_010055	ENSMUSG00000001510	Dlx3	AV237891|Dlx-3	distal-less homeobox 3	protein-coding	2.5	0.0	0.0	0.0	3.0	0.0
Merged-chr15-98481652-4	chr15	98481146	98482146	+	864.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010679, intron 2 of 3)	intron (NM_010679, intron 2 of 3)	1037.0	NM_010679	16770.0	Mm.5074	NM_010679	ENSMUSG00000022991	Lalba	AW208827|Lyzg	lactalbumin, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47771305-2	chr6	47770771	47771771	+	864.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18346.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	10.5	0.5	0.0	0.0	0.0	0.0
Merged-chr19-32239389-2	chr19	32238889	32239889	+	864.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 4 of 9)	intron (NM_144792, intron 4 of 9)	-28376.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-51788385-4	chr17	51787803	51788803	+	864.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357637, intron 5 of 10)	intron (NM_001357637, intron 5 of 10)	23751.0	NM_001163630	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-125273820-3	chr10	125273347	125274347	+	864.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 3 of 5)	intron (NM_001358496, intron 3 of 5)	34969.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-12993836-3	chr14	12993341	12994341	+	864.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-170762.0	NM_001359919	27062.0	Mm.260881	NM_012061	ENSMUSG00000054423	Cadps	AU067781|CAPS|CAPS1|mKIAA1121	Ca2+-dependent secretion activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129406669-4	chr4	129406150	129407150	+	864.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23931.0	NR_151530	320896.0	Mm.404042	NR_151530		C330020E22Rik	-	RIKEN cDNA C330020E22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-32401346-4	chr3	32400850	32401850	+	864.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34801.0	NM_008839	18706.0	Mm.260521	NM_008839	ENSMUSG00000027665	Pik3ca	6330412C24Rik|caPI3K|p110|p110alpha	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-43722886-4	chr2	43722374	43723374	+	864.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25950.0	NM_001301832	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-27026857-2	chr9	27026357	27027357	+	864.7000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_178027, intron 1 of 5)	intron (NM_178027, intron 1 of 5)	3237.0	NM_178027	69091.0	Mm.218717	NM_178027	ENSMUSG00000031988	Vps26b	1810012I05Rik|2310075A12Rik|AI848392	VPS26 retromer complex component B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64736637-8	chr1	64736090	64737090	+	864.6823119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_022721, exon 2 of 2)	exon (NM_022721, exon 2 of 2)	1160.0	NM_001042659	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70906134-5	chr8	70905643	70906643	+	864.6742550000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173013, intron 1 of 6)	CpG	169.0	NM_173013	270058.0	Mm.248559	NM_173013	ENSMUSG00000019261	Map1s	6430517J16Rik|Bpy2ip1|Map8|Mtap1s|VCY2IP1	microtubule-associated protein 1S	protein-coding	19.0	53.5	32.5	16.5	27.5	30.0
Merged-chr7-5054089-3	chr7	5053595	5054595	+	864.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026900)	TTS (NM_026900)	-2057.0	NM_001290429	232821.0	Mm.482157	NM_146178	ENSMUSG00000035228	Ccdc106	BC018462	coiled-coil domain containing 106	protein-coding	0.0	0.0	2.0	1.0	0.0	0.0
Merged-chr4-101146282-3	chr4	101145790	101146790	+	864.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183024, intron 11 of 11)	intron (NM_183024, intron 11 of 11)	77252.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-73886141-3	chr8	73885646	73886646	+	864.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-532606.0	NM_010687	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	2.5	0.0	0.0	0.0	0.0	4.0
Merged-chr15-98805452-3	chr15	98804936	98805936	+	864.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001013741, exon 2 of 2)	exon (NM_001013741, exon 2 of 2)	2489.0	NM_001013741	13199.0	Mm.390810	NM_001013741	ENSMUSG00000059213	Ddn	Gm748	dendrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49829606-3	chr11	49829098	49830098	+	864.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013529, intron 15 of 18)	intron (NM_013529, intron 15 of 18)	-17153.0	NM_001163671	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-48776798-3	chr11	48776270	48777270	+	864.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-23590.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122371870-3	chr5	122371367	122372367	+	864.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026883)	promoter-TSS (NM_026883)	96.0	NM_026883	68948.0	Mm.474469	NM_026883	ENSMUSG00000029463	Fam216a	1500011H22Rik	family with sequence similarity 216, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81295395-3	chr7	81294907	81295907	+	864.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 5 of 21)	intron (NM_008803, intron 5 of 21)	49827.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117138449-6	chr11	117137988	117138988	+	864.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 2 of 16)	intron (NM_001166507, intron 2 of 16)	23316.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98274048-4	chr12	98273535	98274535	+	864.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008152, intron 1 of 1)	intron (NM_008152, intron 1 of 1)	5400.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22046139-3	chr16	22045639	22046639	+	864.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027488, intron 16 of 16)	PB1D10|SINE|Alu	36655.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32473204-3	chr18	32472682	32473682	+	864.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	86852.0	NM_001048207	71683.0	Mm.292145	NM_027863	ENSMUSG00000090523	Gypc	0610037F22Rik|Cd236r	glycophorin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47644454-4	chr9	47643945	47644945	+	864.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	L1MC4a|LINE|L1	114093.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	59.0	92.0	70.5	48.0	83.0	84.0
Merged-chr9-61698143-2	chr9	61697643	61698643	+	864.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	216367.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-121985656-2	chr7	121985156	121986156	+	864.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3963.0	NM_001033318	233824.0	Mm.442015	NM_001033318	ENSMUSG00000034951	Cog7	5630400E24Rik|Gm167	component of oligomeric golgi complex 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45146517-2	chr9	45146058	45147058	+	864.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013390, intron 1 of 4)	intron (NM_001013390, intron 1 of 4)	7516.0	NM_001013390	399548.0	Mm.335112	NM_001013390	ENSMUSG00000046480	Scn4b	Gm1471	sodium channel, type IV, beta	protein-coding	0.0	0.0	1.0	0.0	6.5	2.5
Merged-chr17-56884506-4	chr17	56883996	56884996	+	864.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030141, intron 10 of 13)	PB1D7|SINE|Alu	8863.0	NM_030141	78625.0	Mm.160106	NM_030141	ENSMUSG00000024209	1700061G19Rik	1700026H02|AI507598	RIKEN cDNA 1700061G19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-69648479-2	chr2	69647979	69648979	+	864.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_028284, intron 1 of 11)	RSINE1|SINE|B4	1224.0	NM_028284	72569.0	Mm.252136	NM_028284	ENSMUSG00000063145	Bbs5	1700049I01Rik|2700023J09Rik	Bardet-Biedl syndrome 5 (human)	protein-coding	13.5	8.0	2.5	5.5	7.5	5.0
Merged-chr18-54908468-4	chr18	54907980	54908980	+	864.6124880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	81700.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	2.5	5.0	0.5	2.5	0.0	6.0
Merged-chr5-114924851-8	chr5	114924087	114925087	+	864.59375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359946, intron 1 of 4)	intron (NM_001359946, intron 1 of 4)	1347.0	NM_001359945	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	1.5	30.5	32.0	21.5	120.5	68.0
Merged-chr5-31614799-2	chr5	31614299	31615299	+	864.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025796, intron 2 of 3)	Tigger5b|DNA|TcMar-Tigger	848.0	NM_025796	66845.0	Mm.120763	NM_025796	ENSMUSG00000106918	Mrpl33	0610009M10Rik|L33mt|MRP-L33	mitochondrial ribosomal protein L33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-162546200-2	chr1	162545700	162546700	+	864.583374	f1_balb.idr|f1_c57bl6.idr	exon (NM_144877, exon 2 of 8)	exon (NM_144877, exon 2 of 8)	2145.0	NM_144877	71449.0	Mm.270569	NM_144877	ENSMUSG00000026694	Mettl13	5630401D24Rik	methyltransferase like 13	protein-coding	1.0	2.0	8.5	0.0	7.5	6.0
Merged-chr15-102987631-3	chr15	102987128	102988128	+	864.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2911.0	NM_010466	15426.0	Mm.6167	NM_010466	ENSMUSG00000001657	Hoxc8	D130011F21Rik|Hox-3.1	homeobox C8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126378052-4	chr7	126377549	126378549	+	864.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023712)	promoter-TSS (NM_023712)	-115.0	NR_045537	73658.0	Mm.11112	NM_023712	ENSMUSG00000030741	Spns1	2210013K02Rik|Spin1|Spinl	spinster homolog 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20227728-4	chr16	20227235	20228235	+	864.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001145930, exon 28 of 31)	exon (NM_001145930, exon 28 of 31)	13623.0	NM_198599	208158.0	Mm.326383	NM_198599	ENSMUSG00000041205	Map6d1	A330066I15Rik	MAP6 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-118638148-3	chr5	118637624	118638624	+	864.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	77405.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	6.5	2.0	0.5	2.5	9.0	4.0
Merged-chr6-58930177-3	chr6	58929674	58930674	+	864.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23048.0	NM_021432	58243.0	Mm.389747	NM_021432	ENSMUSG00000055430	Nap1l5	1110020M21Rik	nucleosome assembly protein 1-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42156408-3	chr19	42155914	42156914	+	864.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	9025.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111870585-3	chr13	111870067	111871067	+	864.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130345, intron 2 of 2)	intron (NR_130345, intron 2 of 2)	2631.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0.0	3.5	0.0	0.0	0.0	0.0
Merged-chr10-80566487-4	chr10	80565950	80566950	+	864.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_078477)	TTS (NM_078477)	-4890.0	NM_025852	66932.0	Mm.1116	NM_025852	ENSMUSG00000047417	Rexo1	1700021P10Rik|2610511M11Rik|AW050347|EloA-BP1|Rex1|Tceb3bp1	REX1, RNA exonuclease 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41000291-5	chr13	40999755	41000755	+	864.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026550)	promoter-TSS (NM_026550)	-755.0	NM_026550	68083.0	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102446776-2	chr12	102446276	102447276	+	864.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-6963.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-70313194-2	chr16	70312694	70313694	+	864.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028803)	promoter-TSS (NM_028803)	-755.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20621071-2	chr16	20620571	20621571	+	864.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_028420, exon 1 of 2)	exon (NM_028420, exon 1 of 2)	207.0	NM_028420	73047.0	Mm.425977	NM_028420	ENSMUSG00000051146	Camk2n2	2900075A18Rik	calcium/calmodulin-dependent protein kinase II inhibitor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100441297-2	chr5	100440797	100441797	+	864.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172714)	TTS (NM_172714)	-11762.0	NR_034038	100503199.0	Mm.392282	NR_034038	ENSMUSG00000097772	5430416N02Rik	100041797|Adapt33|Gm3514	RIKEN cDNA 5430416N02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124629652-2	chr5	124629152	124630152	+	864.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011596, intron 1 of 19)	intron (NM_011596, intron 1 of 19)	600.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73535610-2	chr7	73535110	73536110	+	864.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	6136.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-69554335-2	chr5	69553835	69554835	+	864.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2589.0	NM_172711	231279.0	Mm.21105	NM_172711	ENSMUSG00000029208	Guf1	4631409J12|AA407526|EF-4	GUF1 homolog, GTPase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36194428-2	chr17	36193928	36194928	+	864.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4277.0	NM_008208	15043.0	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr15-97725740-2	chr15	97725240	97726240	+	864.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168693, intron 2 of 9)	intron (NM_001168693, intron 2 of 9)	-4590.0	NM_008902	19011.0	Mm.1001	NM_008902	ENSMUSG00000022468	Endou	Pp11r|Tcl-30	endonuclease, polyU-specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118597471-2	chr9	118596971	118597971	+	864.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger5|DNA|TcMar-Tigger	-9238.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-75315634-2	chr1	75315134	75316134	+	864.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_016878, exon 6 of 15)	exon (NM_016878, exon 6 of 15)	1383.0	NM_016878	13437.0	Mm.24680	NM_016878	ENSMUSG00000026209	Dnpep	AA407814	aspartyl aminopeptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-78525426-2	chr1	78524926	78525926	+	864.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026713, intron 4 of 6)	intron (NM_026713, intron 4 of 6)	14366.0	NM_026713	68393.0	Mm.41325	NM_026713	ENSMUSG00000012187	Mogat1	0610030A14Rik|1110064N14Rik|Dgat2l|Dgat2l1|MGAT1|WI1-2612I11.1|mDC2	monoacylglycerol O-acyltransferase 1	protein-coding	0.0	0.0	1.0	1.0	0.0	0.0
Merged-chr2-156542944-4	chr2	156542436	156543436	+	864.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013510, exon 22 of 22)	3' UTR (NM_013510, exon 22 of 22)	-4640.0	NM_026661	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	8.0	14.5	11.5	2.5	10.5	15.0
Merged-chr10-35113109-2	chr10	35112609	35113609	+	864.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	629709.0	NM_010237	14302.0	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-25995650-2	chr4	25995150	25996150	+	864.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	-195647.0	NM_010243	14348.0	Mm.39101	NM_010243	ENSMUSG00000055373	Fut9	AI746471|AU067636|mFUT9|mFuc-TIX	fucosyltransferase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191391512-4	chr1	191391034	191392034	+	864.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144880, intron 1 of 12)	intron (NM_144880, intron 1 of 12)	5507.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	0.0	5.5	2.0	1.0	6.5	3.0
Merged-chr15-85671953-2	chr15	85671453	85672453	+	864.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-31820.0	NR_110483	102800312.0	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	7.0	11.0	6.0	9.0	5.5	10.5
Merged-chr11-114673069-2	chr11	114672569	114673569	+	864.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023372)	TTS (NM_023372)	-2399.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3808602-2	chr4	3808102	3809102	+	864.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	27053.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	1.0	10.5	2.5	1.0	6.0	8.0
Merged-chr19-10389460-2	chr19	10388960	10389960	+	864.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_173068, exon 1 of 11)	5' UTR (NM_173068, exon 1 of 11)	370.0	NM_173068	54525.0	Mm.182654	NM_018801	ENSMUSG00000024743	Syt7	AI851541|B230112P13Rik	synaptotagmin VII	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-75314567-2	chr1	75314067	75315067	+	864.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110831, intron 8 of 14)	intron (NM_001110831, intron 8 of 14)	2450.0	NM_016878	13437.0	Mm.24680	NM_016878	ENSMUSG00000026209	Dnpep	AA407814	aspartyl aminopeptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45544791-2	chr19	45544291	45545291	+	864.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15773.0	NM_001330506	56626.0	Mm.46509	NM_020032	ENSMUSG00000025218	Poll	1110003P06Rik|AV007317	polymerase (DNA directed), lambda	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24839423-2	chr5	24838923	24839923	+	864.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053075, intron 1 of 7)	intron (NM_053075, intron 1 of 7)	2938.0	NM_053075	19744.0	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-59129232-2	chr12	59128732	59129732	+	864.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165254)	promoter-TSS (NM_001165254)	-516.0	NM_146034	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6855460-2	chr19	6854960	6855960	+	864.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081291, exon 10 of 27)	exon (NM_001081291, exon 10 of 27)	2751.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153200190-2	chr2	153199690	153200690	+	864.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 13 of 17)	intron (NM_133847, intron 13 of 17)	25251.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144269459-2	chr2	144268959	144269959	+	864.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024225, intron 1 of 12)	intron (NM_024225, intron 1 of 12)	1113.0	NM_024225	69178.0	Mm.273379	NM_024225	ENSMUSG00000027423	Snx5	0910001N05Rik|1810032P22Rik|AU019504|D2Ertd52e	sorting nexin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35421729-2	chr17	35421342	35422342	+	864.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-3005.0	NM_023124	15019.0	Mm.486287	NM_023124		H2-Q8	H-2Q8|MMS10-T|Ms10t|Qa-2|Qa-8|Qa8	histocompatibility 2, Q region locus 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80094681-4	chr11	80094186	80095186	+	864.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001029856, exon 2 of 23)	exon (NM_001029856, exon 2 of 23)	5286.0	NM_001029856	237877.0	Mm.89551	NM_001029856	ENSMUSG00000017550	Atad5	C130052G03Rik|FRAG1|Gm17	ATPase family, AAA domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-116943372-6	chr2	116942847	116943847	+	864.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	43195.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80857376-4	chr7	80856883	80857883	+	864.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4725.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr3-115644090-4	chr3	115643574	115644574	+	864.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70981.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.0	0.0	4.0	2.0	3.0	0.0
Merged-chr10-41678952-4	chr10	41678449	41679449	+	864.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 7 of 47)	intron (NM_001358562, intron 7 of 47)	37514.0	NM_001358562	75973.0	Mm.228517	NM_029493	ENSMUSG00000075225	Ccdc162	5033413D22Rik|Ccdc162p|Gm29096|Gm61|Gm6976	coiled-coil domain containing 162	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4080498-3	chr12	4080011	4081011	+	864.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2063.0	NM_153082	217378.0	Mm.271656	NM_153082	ENSMUSG00000020657	Dnajc27	AI639580|C330021A05Rik|Rabj|Rbj	DnaJ heat shock protein family (Hsp40) member C27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-97859198-3	chr13	97858667	97859667	+	864.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108055.0	NR_152263	111365222.0	Mm.440079	NR_152263		Eyelinc18	-	uncharacterized EyeLinc18	ncRNA	8.0	2.0	11.5	6.0	5.0	5.5
Merged-chr8-90869648-5	chr8	90869155	90870155	+	864.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	40820.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	29.0	72.0	59.0	30.5	69.5	79.0
Merged-chr10-8753640-3	chr10	8753156	8754156	+	864.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 9 of 19)	intron (NM_175155, intron 9 of 19)	132414.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.5	5.5	4.0	1.0	0.0	1.0
Merged-chr18-12760912-4	chr18	12760405	12761405	+	864.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252490, intron 10 of 13)	intron (NM_001252490, intron 10 of 13)	19550.0	NM_027687	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-57797582-4	chr14	57797064	57798064	+	864.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142441)	promoter-TSS (NM_001142441)	-625.0	NM_009119	20220.0	Mm.30173	NM_009119	ENSMUSG00000021963	Sap18	C530046K05Rik|D11Ertd539e|EMegR4|Sap18a|Sinbp1	Sin3-associated polypeptide 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-115985100-2	chr4	115984600	115985600	+	864.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	32824.0	NM_010173	14073.0	Mm.256025	NM_010173	ENSMUSG00000034171	Faah	AW412498	fatty acid amide hydrolase	protein-coding	0.0	8.0	0.0	1.0	0.0	0.0
Merged-chr16-4630138-4	chr16	4629614	4630614	+	864.404175	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030205, intron 23 of 27)	intron (NM_030205, intron 23 of 27)	-5168.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20735892-2	chr14	20735392	20736392	+	864.400024	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001039138, exon 20 of 20)	3' UTR (NM_001039138, exon 20 of 20)	-1330.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	0.0	9.0	0.0	0.0	0.0	0.0
Merged-chr16-19963185-4	chr16	19962697	19963697	+	864.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183390, intron 2 of 6)	Lx8|LINE|L1	19852.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-25849189-6	chr11	25848721	25849721	+	864.3425900000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027973, intron 2 of 5)	intron (NR_027973, intron 2 of 5)	-353019.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	1.5	28.5	11.5	8.5	3.5	11.0
Merged-chr11-78397688-2	chr11	78397188	78398188	+	864.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_022411, exon 12 of 12)	exon (NM_022411, exon 12 of 12)	3203.0	NR_003282	790911.0	Mm.457257	NR_003282	ENSMUSG00000085747	Slc13a2os	Gm11194	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78671652-4	chr9	78671149	78672149	+	864.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153098, intron 15 of 32)	intron (NM_153098, intron 15 of 32)	56103.0	NM_153098	235505.0	Mm.32955	NM_153098	ENSMUSG00000046186	Cd109	9930012E15Rik|AI480638|GARP	CD109 antigen	protein-coding	0.0	2.0	0.0	1.0	3.5	2.5
Merged-chr10-117747148-3	chr10	117746658	117747658	+	864.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029875)	promoter-TSS (NM_029875)	-800.0	NM_029875	215436.0	Mm.256753	NM_029875	ENSMUSG00000060181	Slc35e3	9330166G04Rik|AI481200	solute carrier family 35, member E3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45453550-3	chr7	45453051	45454051	+	864.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030678, intron 14 of 15)	B3A|SINE|B2	6335.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45623975-3	chr13	45623482	45624482	+	864.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 5 of 6)	(ATG)n|Simple_repeat|Simple_repeat	116538.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11746319-3	chr11	11745785	11746785	+	864.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301865, intron 3 of 6)	intron (NM_001301865, intron 3 of 6)	56108.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63126036-3	chr14	63125524	63126524	+	864.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	B4A|SINE|B4	3562.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-144294203-3	chr1	144293684	144294684	+	864.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45080.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79252992-1	chr3	79252492	79253492	+	864.3333130000001	f0_balb.idr	intron (NR_045502, intron 2 of 2)	intron (NR_045502, intron 2 of 2)	40073.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	71.0	170.0	70.5	2.5	21.5	21.5
Merged-chr6-125040457-3	chr6	125039955	125040955	+	864.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133345, intron 1 of 7)	intron (NM_133345, intron 1 of 7)	607.0	NM_133345	28019.0	Mm.262547	NM_133345	ENSMUSG00000030330	Ing4	D6Wsu147e|D6Xrf92|p29ING4	inhibitor of growth family, member 4	protein-coding	88.0	267.0	176.5	73.5	242.5	162.0
Merged-chr7-80582332-4	chr7	80581832	80582832	+	864.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-47213.0	NM_001042527	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	6.5	69.0	45.0	17.0	20.0	20.0
Merged-chr14-32939379-3	chr14	32938867	32939867	+	864.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001361602, exon 6 of 6)	3' UTR (NM_001361602, exon 6 of 6)	-52015.0	NM_001146021	67580.0	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106410876-3	chr11	106410374	106411374	+	864.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 12 of 21)	intron (NM_023913, intron 12 of 21)	-28093.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37136208-3	chr10	37135702	37136702	+	864.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008538, exon 2 of 2)	exon (NM_008538, exon 2 of 2)	2724.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120938128-3	chr11	120937646	120938646	+	864.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5274.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	0.0	9.0	0.5	3.0	6.5	1.0
Merged-chr11-86807147-3	chr11	86806655	86807655	+	864.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026191, intron 1 of 17)	intron (NM_026191, intron 1 of 17)	505.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57305849-3	chr17	57305355	57306355	+	864.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 19 of 25)	ZP3AR|Satellite|Satellite	26755.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr3-97158116-4	chr3	97157670	97158670	+	864.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019800)	promoter-TSS (NM_019800)	-607.0	NM_019800	66659.0	Mm.101368	NM_019800	ENSMUSG00000028093	Acp6	5730559A09Rik|ACPL1|AU022842|mPACPL1	acid phosphatase 6, lysophosphatidic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-153636644-4	chr3	153636155	153637155	+	864.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 1 of 4)	intron (NM_011372, intron 1 of 4)	88478.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80392197-3	chr18	80391735	80392735	+	864.3110960000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27981.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	4.5	5.5	2.5	4.0	4.0	10.0
Merged-chr4-142166129-4	chr4	142165683	142166683	+	864.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109684, intron 1 of 6)	intron (NM_001109684, intron 1 of 6)	44025.0	NM_144531	71529.0	Mm.255986	NM_144531	ENSMUSG00000040606	Kazn	2310007B04Rik|9030409G11Rik|AI256607|AI666764|AW061099|Kaz|Kazrin	kazrin, periplakin interacting protein	protein-coding	0.0	16.0	3.0	4.5	10.0	5.5
Merged-chr13-113669865-3	chr13	113669368	113670368	+	864.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6192.0	NM_019960	56534.0	Mm.41410	NM_019960	ENSMUSG00000051456	Hspb3	2310035K17Rik|AI844863|Hsbp3|spb3	heat shock protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74926071-3	chr15	74925564	74926564	+	864.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28987.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	80.0	208.5	106.5	68.0	168.5	101.0
Merged-chr9-65549323-3	chr9	65548821	65549821	+	864.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30766.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	24.0	43.0	35.0	20.5	79.0	69.5
Merged-chr7-80749298-3	chr7	80748834	80749834	+	864.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 14 of 37)	B2_Mm1a|SINE|B2	53997.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	4.0	0.0	1.0	8.5	2.0	3.0
Merged-chr8-104101459-2	chr8	104100959	104101959	+	864.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009868)	promoter-TSS (NM_009868)	-166.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11489250-4	chr4	11488749	11489749	+	864.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081183, intron 1 of 24)	intron (NM_001081183, intron 1 of 24)	3291.0	NM_001347055	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32032931-4	chr9	32032485	32033485	+	864.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-83151.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116187872-2	chr3	116187372	116188372	+	864.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-58184.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-64884107-4	chr16	64883601	64884601	+	864.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	32100.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84973930-2	chr8	84973411	84974411	+	864.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317385, intron 5 of 5)	intron (NM_001317385, intron 5 of 5)	4289.0	NM_011563	21672.0	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	9.0	21.0	24.5	14.0	14.0	10.5
Merged-chr15-98417383-4	chr15	98416886	98417886	+	864.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	18941.0	NR_015496	73302.0	Mm.272760	NR_015496	ENSMUSG00000099353	1700031M16Rik	4930413L20Rik	RIKEN cDNA 1700031M16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59613104-4	chr2	59612597	59613597	+	864.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198294, intron 1 of 26)	intron (NM_198294, intron 1 of 26)	1055.0	NM_198294	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8098063-4	chr15	8097554	8098554	+	864.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358788, intron 2 of 3)	B3|SINE|B2	1155.0	NM_001358788	545085.0	Mm.321312	NM_001081402	ENSMUSG00000039828	Wdr70	4833422F06Rik	WD repeat domain 70	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-21825096-4	chr3	21824595	21825595	+	864.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-251557.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-126902749-2	chr10	126902249	126903249	+	864.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1378.0	NM_001358970	68876.0	Mm.276769	NM_026858	ENSMUSG00000025436	Atp23	1110068E08Rik|2410012H02Rik|Xrcc6bp1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64753885-4	chr1	64753374	64754374	+	864.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16124.0	NM_022721	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11323519-4	chr16	11323024	11324024	+	864.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 1 of 20)	intron (NM_028964, intron 1 of 20)	620.0	NM_028964	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57835163-4	chr9	57834678	57835678	+	864.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019689)	promoter-TSS (NM_019689)	-944.0	NM_019689	56380.0	Mm.425588	NM_019689	ENSMUSG00000004661	Arid3b	Bdp|Dri2	AT rich interactive domain 3B (BRIGHT-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120953948-2	chr4	120953448	120954448	+	864.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2247.0	NM_001005788	381549.0	Mm.331840	NM_001005788	ENSMUSG00000064141	Zfp69	Gm1029|Krab2|Zfp63	zinc finger protein 69	protein-coding	0.0	6.5	1.5	3.5	0.0	1.0
Merged-chr17-9774959-2	chr17	9774454	9775454	+	864.25	f0_balb.idr|f1_c57bl6.idr	non-coding (NR_045433, exon 2 of 4)	non-coding (NR_045433, exon 2 of 4)	912.0	NR_045433	71092.0	Mm.243827	NR_045433		4930452A19Rik	4933424P20Rik	RIKEN cDNA 4930452A19 gene	ncRNA	1.5	5.0	0.0	2.0	0.0	5.5
Merged-chr4-114822015-2	chr4	114821558	114822558	+	864.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_033617, intron 1 of 3)	intron (NR_033617, intron 1 of 3)	338.0	NR_033617	433746.0	Mm.388908	NR_033617	ENSMUSG00000055198	Gm12830	-	predicted gene 12830	ncRNA	0.0	0.0	0.0	6.5	0.0	0.0
Merged-chr6-134558923-4	chr6	134558388	134559388	+	864.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 1 of 22)	intron (NM_008514, intron 1 of 22)	8025.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	45.5	113.5	57.0	10.5	13.5	8.0
Merged-chr1-138190868-2	chr1	138190368	138191368	+	864.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15563.0	NM_001268286	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108932310-2	chr12	108931810	108932810	+	864.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	38038.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108452682-4	chr9	108452092	108453092	+	864.223816	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_030075, exon 6 of 11)	5' UTR (NM_030075, exon 6 of 11)	209.0	NM_001359428	78267.0	Mm.283194	NM_030075	ENSMUSG00000032609	Klhdc8b	4931406O17Rik	kelch domain containing 8B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172315161-3	chr1	172314665	172315665	+	864.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080419, intron 1 of 6)	intron (NM_080419, intron 1 of 6)	2798.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	36.0	27.5	15.5	40.0	106.5	73.0
Merged-chr12-41407822-3	chr12	41407325	41408325	+	864.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	ORR1C1-int|LTR|ERVL-MaLR	78232.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97243153-3	chr11	97242661	97243661	+	864.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008942, intron 5 of 22)	intron (NM_008942, intron 5 of 22)	37415.0	NM_008942	19155.0	Mm.29824	NM_008942	ENSMUSG00000001441	Npepps	AAP-S|MP100|Psa|R74825|goku	aminopeptidase puromycin sensitive	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-136078774-4	chr3	136078271	136079271	+	864.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 11 of 16)	intron (NM_001033350, intron 11 of 16)	-238502.0	NR_040540	71038.0	Mm.410798	NR_040540	ENSMUSG00000106306	4933401H06Rik	-	RIKEN cDNA 4933401H06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36466096-4	chr5	36465588	36466588	+	864.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024478, intron 1 of 3)	intron (NM_024478, intron 1 of 3)	903.0	NM_024478	17713.0	Mm.21535	NM_024478	ENSMUSG00000029198	Grpel1	AA408748|mt-GrpE#1|mt-Grpel1	GrpE-like 1, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-32698460-4	chr3	32697946	32698946	+	864.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10100.0	NM_019673	56456.0	Mm.41077	NM_019673	ENSMUSG00000027671	Actl6a	2810432C06Rik|AI851094|ARP4|Actl6|Baf53a|C79802	actin-like 6A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-73255988-5	chr5	73255440	73256440	+	864.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028194, intron 1 of 62)	CpG	678.0	NM_028194	72313.0	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	5.0	21.5	19.5	23.5	21.5	18.0
Merged-chr4-129065910-5	chr4	129065390	129066390	+	864.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 1 of 8)	PB1D10|SINE|Alu	7619.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10984844-4	chr16	10984348	10985348	+	864.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	8273.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25496632-4	chr2	25496116	25497116	+	864.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-2705.0	NM_029958	77701.0	Mm.99123	NM_029958	ENSMUSG00000026943	Lcn12	9230102M18Rik	lipocalin 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45138715-3	chr9	45138259	45139259	+	864.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013390)	promoter-TSS (NM_001013390)	-283.0	NM_001013390	399548.0	Mm.335112	NM_001013390	ENSMUSG00000046480	Scn4b	Gm1471	sodium channel, type IV, beta	protein-coding	0.0	1.0	2.0	0.0	1.0	2.0
Merged-chr7-132815012-2	chr7	132814512	132815512	+	864.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1816.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-33222166-2	chr5	33221666	33222666	+	864.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-3928.0	NM_133903	100689.0	Mm.34694	NM_133903	ENSMUSG00000037379	Spon2	2310045I24Rik|AI504350|M-spondin|Mindin|Mspondin	spondin 2, extracellular matrix protein	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr1-55529710-3	chr1	55529224	55530224	+	864.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	123778.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	4.5	3.0	6.0	6.0	0.0	0.0
Merged-chr16-57345001-4	chr16	57344503	57345503	+	864.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025599, intron 1 of 9)	MERVL_2A-int|LTR|ERVL	-8274.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134091677-2	chr1	134091177	134092177	+	864.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12522.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61949554-2	chr11	61949054	61950054	+	864.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7209.0	NM_001281818	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80388790-4	chr7	80388315	80389315	+	864.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010194)	promoter-TSS (NM_010194)	-869.0	NM_010194	14159.0	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	28.5	46.0	50.0	34.5	74.0	57.0
Merged-chr8-71702211-10	chr8	71701664	71702664	+	864.156677	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028189)	promoter-TSS (NM_028189)	-364.0	NM_028189	72297.0	Mm.290837	NM_028189	ENSMUSG00000031803	B3gnt3	2210008L19Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding	3.0	8.5	10.5	3.0	14.5	12.0
Merged-chr17-24687473-4	chr17	24686974	24687974	+	864.1333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011522, intron 2 of 3)	CpG	2475.0	NM_011522	20974.0	Mm.26032	NM_011522	ENSMUSG00000007021	Syngr3	-	synaptogyrin 3	protein-coding	2.0	3.0	6.0	0.0	0.0	1.0
Merged-chr16-33346656-6	chr16	33346158	33347158	+	864.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	34078.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64718307-4	chr5	64717823	64718823	+	864.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-85200.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	15.0	24.5	29.5	15.5	20.5	26.0
Merged-chr8-121092824-2	chr8	121092324	121093324	+	864.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8438.0	NM_010426	15227.0	Mm.33897	NM_010426	ENSMUSG00000042812	Foxf1	AI450827|FREAC1|Foxf1a|Freac-1|HFH-8|Hfh8	forkhead box F1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145804778-4	chr2	145804280	145805280	+	864.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	L1MB3|LINE|L1	18664.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-21845827-4	chr17	21845311	21846311	+	864.087524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029281)	promoter-TSS (NM_029281)	-52.0	NM_029281	75424.0	Mm.271252	NM_029281	ENSMUSG00000069743	Zfp820	2610036F08Rik	zinc finger protein 820	protein-coding	0.0	0.0	8.0	0.0	0.0	8.0
Merged-chr3-135421249-4	chr3	135420725	135421725	+	864.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025902, intron 1 of 2)	ID_B1|SINE|B4	2208.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100610329-2	chr11	100609829	100610829	+	864.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019795, intron 1 of 13)	intron (NM_019795, intron 1 of 13)	9839.0	NM_019795	56354.0	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63151343-4	chr4	63150835	63151835	+	864.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007443, intron 3 of 9)	intron (NM_007443, intron 3 of 9)	2837.0	NM_007443	11699.0	Mm.2197	NM_007443	ENSMUSG00000028356	Ambp	AI194774|ASPI|HI-30|Intin4|Itil|UTI	alpha 1 microglobulin/bikunin	protein-coding	0.0	2.0	2.5	0.0	2.0	6.0
Merged-chr5-17843452-4	chr5	17842952	17843952	+	864.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	6340.0	NM_001159557	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-114390353-6	chr9	114389731	114390731	+	864.0793460000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019922, exon 1 of 7)	exon (NM_019922, exon 1 of 7)	481.0	NM_019922	56693.0	Mm.20904	NM_019922	ENSMUSG00000032431	Crtap	5730529N23Rik|CASP|Leprel3|P3h5	cartilage associated protein	protein-coding	7.0	0.0	16.0	5.5	0.5	2.5
Merged-chr13-70038454-3	chr13	70037930	70038930	+	864.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131156, intron 2 of 2)	intron (NR_131156, intron 2 of 2)	-10082.0	NR_045965	74280.0	Mm.273343	NR_045965	ENSMUSG00000099639	1700084F23Rik	1700003E18Rik|4930589D02Rik	RIKEN cDNA 1700084F23 gene	ncRNA	1.5	17.0	4.0	0.0	0.0	1.0
Merged-chr7-123366157-6	chr7	123365588	123366588	+	864.0639039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	3827.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7789238-4	chr9	7788727	7789727	+	864.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152989, intron 3 of 5)	intron (NR_152989, intron 3 of 5)	4837.0	NR_049191	100885830.0		NR_049191	ENSMUSG00000093615	Mir5618	Gm23685|mmu-mir-5618	microRNA 5618	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145123916-4	chr6	145123427	145124427	+	864.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008511, intron 1 of 18)	intron (NM_008511, intron 1 of 18)	2188.0	NM_008511	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	13.5	12.0	15.0	6.5	8.0	8.5
Merged-chr13-58443968-4	chr13	58443479	58444479	+	864.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40636.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18952243-3	chr2	18951743	18952743	+	864.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	45878.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91400370-3	chr12	91399833	91400833	+	864.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113404)	promoter-TSS (NM_001113404)	-660.0	NM_001113404	22095.0	Mm.173847	NM_011648	ENSMUSG00000020963	Tshr	AI481368|hypothroid|hyt|pet	thyroid stimulating hormone receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-56774419-4	chr13	56773887	56774887	+	864.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302372, intron 11 of 11)	intron (NM_001302372, intron 11 of 11)	70719.0	NM_001164042	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	0.0	0.0	3.5	0.0	0.0	1.0
Merged-chr13-92580461-4	chr13	92579969	92580969	+	864.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4237.0	NM_030237	79401.0	Mm.23520	NM_030237	ENSMUSG00000046957	Spz1	1700027M20Rik|AI429130	spermatogenic leucine zipper 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-43103005-2	chr9	43102505	43103505	+	864.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359232, intron 1 of 40)	intron (NM_001359232, intron 1 of 40)	2713.0	NM_001359232	69632.0	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	1.5	0.5	0.0	0.0	0.0	0.0
Merged-chr1-134101828-2	chr1	134101328	134102328	+	864.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9414.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65909728-3	chr9	65909229	65910229	+	864.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019797)	promoter-TSS (NM_019797)	719.0	NM_173185	214897.0	Mm.325816	NM_173185	ENSMUSG00000032384	Csnk1g1	9130020E21Rik	casein kinase 1, gamma 1	protein-coding	6.5	7.0	11.0	4.5	6.0	6.5
Merged-chr5-76833118-3	chr5	76832615	76833615	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7484.0	NM_001163793	320827.0	Mm.101504	NM_001163793	ENSMUSG00000036377	C530008M17Rik	2810489J07Rik|4930529A19Rik|4931405B09Rik|Kiaa1211|mKIAA1211	RIKEN cDNA C530008M17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75341774-2	chr18	75341274	75342274	+	864.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25314.0	NR_155535	102636262.0	Mm.421168	NR_155535		Gm20544	-	predicted gene 20544	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156721890-2	chr2	156721390	156722390	+	864.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040505)	promoter-TSS (NR_040505)	611.0	NM_001042487	228836.0	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	DLG associated protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75066713-2	chr8	75066213	75067213	+	864.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136259, intron 13 of 15)	intron (NM_001136259, intron 13 of 15)	-26905.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	6.0	0.0	3.0	5.5	9.5	7.0
Merged-chr5-135191841-4	chr5	135191351	135192351	+	864.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011714, intron 1 of 18)	B3|SINE|B2	4528.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24728574-2	chr17	24728082	24729082	+	864.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163945, intron 2 of 9)	intron (NM_001163945, intron 2 of 9)	753.0	NM_001163945	66211.0	Mm.46198	NM_025425	ENSMUSG00000002500	Rpl3l	1110057H16Rik	ribosomal protein L3-like	protein-coding	0.0	9.0	3.0	12.0	4.5	0.0
Merged-chr12-102284764-3	chr12	102284251	102285251	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	1110.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71711095-3	chr17	71710631	71711631	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177087, intron 14 of 19)	L2|LINE|L2	37870.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	0.0	0.0	2.0	0.0	0.5	2.0
Merged-chr13-20783629-2	chr13	20783129	20784129	+	864.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10484.0	NM_001281854	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-30326235-3	chr6	30325735	30326735	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21696.0	NM_001169576	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-92270405-2	chr6	92269905	92270905	+	864.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-25755.0	NM_009426	22044.0	Mm.1363	NM_009426	ENSMUSG00000005892	Trh	Pro-TRH|Trf	thyrotropin releasing hormone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105564101-2	chr5	105563601	105564601	+	864.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	Lx8|LINE|L1	44630.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50352999-2	chr6	50352499	50353499	+	864.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347213, exon 4 of 24)	exon (NM_001347213, exon 4 of 24)	29838.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60708355-3	chr13	60707851	60708851	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	RMER15|LTR|ERVL	78013.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	3.0	0.0	1.5	7.5	10.5	3.0
Merged-chr6-29539517-2	chr6	29539017	29540017	+	864.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311083, intron 9 of 9)	intron (NM_001311083, intron 9 of 9)	10235.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118208378-3	chr11	118207872	118208872	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	4370.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4400711-2	chr11	4400211	4401211	+	864.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029458, intron 10 of 10)	ORR1G|LTR|ERVL-MaLR	40371.0	NM_029458	75828.0	Mm.159592	NM_029458	ENSMUSG00000020419	Hormad2	4930529M09Rik	HORMA domain containing 2	protein-coding	1.0	3.5	0.0	0.0	0.0	0.0
Merged-chr11-101589537-3	chr11	101589009	101590009	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359325, intron 6 of 7)	intron (NM_001359325, intron 6 of 7)	7210.0	NM_001359325	217203.0	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44512719-2	chr9	44512219	44513219	+	864.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_030256)	TTS (NM_030256)	13583.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	10.0	31.5	26.0	13.0	29.0	16.5
Merged-chr8-25746000-3	chr8	25745500	25746500	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361595, intron 7 of 15)	RLTR31D_MM|LTR|ERVK	8280.0	NM_028102	72108.0	Mm.246875	NM_028102	ENSMUSG00000061313	Ddhd2	2010305K11Rik|SAMWD1|mKIAA0725	DDHD domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47371612-2	chr17	47371112	47372112	+	864.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183086, intron 1 of 6)	intron (NM_183086, intron 1 of 6)	2415.0	NM_183086	64657.0	Mm.216250	NM_183086	ENSMUSG00000034729	Mrps10	1110038B19Rik|AW743084|Rpms10	mitochondrial ribosomal protein S10	protein-coding	7.5	0.0	5.0	1.0	0.5	4.5
Merged-chr11-116626566-4	chr11	116626057	116627057	+	864.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	462.0	NM_172572	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	4.0	43.5	31.5	10.0	54.0	20.5
Merged-chr13-35302324-2	chr13	35301824	35302824	+	864.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-90276.0	NR_126478	75543.0	Mm.489052	NR_126478	ENSMUSG00000113770	1700019C18Rik	-	RIKEN cDNA 1700019C18 gene	ncRNA	1.0	0.0	5.0	0.5	1.5	0.5
Merged-chr8-84743313-3	chr8	84742791	84743791	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081982, intron 2 of 9)	intron (NM_001081982, intron 2 of 9)	31078.0	NM_001081981	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	0.0	3.5	4.5	0.5	0.0	2.5
Merged-chr10-13985697-2	chr10	13985197	13986197	+	864.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	19318.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	8.0	11.0	16.5	8.5	11.5	14.0
Merged-chr8-72348038-2	chr8	72347538	72348538	+	864.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007944, intron 22 of 23)	intron (NM_007944, intron 22 of 23)	28976.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	4.0	3.0	0.5	0.0	5.5	0.0
Merged-chr3-159517754-2	chr3	159517254	159518254	+	864.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172092, intron 6 of 11)	RLTR11A2|LTR|ERVK	22321.0	NM_001172092	76131.0	Mm.371655	NM_029523	ENSMUSG00000028175	Depdc1a	5830484J08Rik|Depdc1	DEP domain containing 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-121024878-2	chr4	121024378	121025378	+	864.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	-7631.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-20265561-2	chr5	20265061	20266061	+	864.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 6 of 22)	intron (NM_001170746, intron 6 of 22)	358043.0	NM_015823	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-13838014-3	chr6	13837523	13838523	+	864.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001330666, exon 3 of 4)	5' UTR (NM_001330666, exon 3 of 4)	1919.0	NM_001330666	64450.0	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61273267-3	chr10	61272768	61273768	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081127, exon 1 of 22)	5' UTR (NM_001081127, exon 1 of 22)	170.0	NM_001081127	237360.0	Mm.333252	NM_001081127	ENSMUSG00000059901	Adamts14	Adamts-14|TS14	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118657285-3	chr9	118656781	118657781	+	864.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 5 of 27)	ORR1A2|LTR|ERVL-MaLR	50572.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	9.5	24.5	21.5	9.5	28.5	20.5
Merged-chr11-19966353-2	chr11	19965853	19966853	+	864.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	41911.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86542746-2	chr1	86542246	86543246	+	864.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360816)	TTS (NM_001360816)	16189.0	NM_001360830	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191202090-3	chr1	191201593	191202593	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18760.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21749680-2	chr14	21749180	21750180	+	864.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026283)	promoter-TSS (NM_026283)	-851.0	NM_026283	67630.0	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-58481875-2	chr18	58481375	58482375	+	864.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74365.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	1.5	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67290502-4	chr18	67290018	67291018	+	864.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053261, intron 1 of 7)	intron (NM_053261, intron 1 of 7)	1295.0	NM_053261	114663.0	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-133543703-3	chr3	133543200	133544200	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040400, intron 1 of 10)	intron (NM_001040400, intron 1 of 10)	690.0	NM_001040400	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-82985214-3	chr6	82984717	82985717	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 4 of 9)	RLTR20A3_MM|LTR|ERVK	38295.0	NM_033079	110958.0	Mm.100652	NM_033079	ENSMUSG00000030041	M1ap	D6Mm5e	meiosis 1 associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27372969-2	chr14	27372469	27373469	+	864.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 3 of 10)	intron (NM_027871, intron 3 of 10)	11580.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.5	4.5	0.5	0.5	3.5	1.0
Merged-chr6-83503333-1	chr6	83502833	83503833	+	864.0	f1_c57bl6.idr	intron (NR_149734, intron 1 of 6)	intron (NR_149734, intron 1 of 6)	3636.0	NM_013764	27369.0	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	45.5	80.0	67.0	32.5	88.0	46.5
Merged-chr8-117052615-2	chr8	117052115	117053115	+	864.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 14 of 42)	intron (NM_029686, intron 14 of 42)	29834.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79088650-4	chr3	79088148	79089148	+	864.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001310536, exon 12 of 24)	exon (NM_001310536, exon 12 of 24)	56239.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131980382-3	chr1	131979907	131980907	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177628, intron 4 of 4)	intron (NM_001177628, intron 4 of 4)	9798.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31104756-3	chr6	31104244	31105244	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-41651.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57183075-3	chr17	57182591	57183591	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11090.0	NM_019418	50930.0	Mm.483369	NM_019418	ENSMUSG00000005824	Tnfsf14	HVEM-L|HVEML|LIGHT|LTg|Ly113|Tnlg1d	tumor necrosis factor (ligand) superfamily, member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-57231823-2	chr12	57231323	57232323	+	864.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164370, intron 1 of 9)	MTD|LTR|ERVL-MaLR	1398.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59596314-2	chr11	59595814	59596814	+	864.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6227.0	NM_146429	258421.0	Mm.377490	NM_146429	ENSMUSG00000048919	Olfr223	MOR256-30	olfactory receptor 223	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-50705111-1	chr10	50704611	50705611	+	864.0	f0_balb.idr	intron (NM_198007, intron 16 of 41)	intron (NM_198007, intron 16 of 41)	112442.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111484060-2	chr12	111483560	111484560	+	864.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033248)	TTS (NM_001033248)	1763.0	NM_001033248	212539.0	Mm.81916	NM_001033248	ENSMUSG00000010529	Gm266	-	predicted gene 266	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180255490-2	chr2	180254990	180255990	+	864.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1889.0	NM_025587	66481.0	Mm.289669	NM_025587	ENSMUSG00000039001	Rps21	1810049N11Rik|2410030A14Rik	ribosomal protein S21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70494996-4	chr12	70494485	70495485	+	863.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037248, intron 2 of 4)	intron (NR_037248, intron 2 of 4)	41831.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-45826358-4	chr1	45825842	45826842	+	863.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31176.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138464102-3	chr4	138463599	138464599	+	863.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8951.0	NM_025451	66259.0	Mm.41603	NM_025451	ENSMUSG00000046447	Camk2n1	1810006K23Rik|AI848599|AI891706	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding	0.0	0.0	0.5	0.0	4.0	1.5
Merged-chr17-17893467-4	chr17	17893033	17894033	+	863.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008039, exon 2 of 2)	exon (NM_008039, exon 2 of 2)	5709.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-142019437-4	chr4	142018966	142019966	+	863.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131014, intron 1 of 1)	MLT1K|LTR|ERVL-MaLR	1568.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72599343-4	chr6	72598842	72599842	+	863.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144917)	promoter-TSS (NM_144917)	714.0	NM_026159	67442.0	Mm.305108	NM_026159	ENSMUSG00000056666	Retsat	0610039N19Rik|C80029|MMT-7|Ppsig	retinol saturase (all trans retinol 13,14 reductase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-43408927-7	chr6	43408483	43409483	+	863.9285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 8 of 8)	intron (NM_013861, intron 8 of 8)	-33446.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98836764-4	chr7	98836276	98837276	+	863.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285792, intron 2 of 6)	intron (NM_001285792, intron 2 of 6)	1664.0	NM_001285792	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44480334-4	chr13	44479839	44480839	+	863.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40612.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	55.0	78.5	56.0	10.5	18.5	14.5
Merged-chr19-26635746-4	chr19	26635252	26636252	+	863.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011416, intron 4 of 32)	intron (NM_011416, intron 4 of 32)	30592.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	2.0	2.5	10.5	4.5	0.0	0.0
Merged-chr13-75943596-5	chr13	75943047	75944047	+	863.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028493, exon 1 of 12)	5' UTR (NM_028493, exon 1 of 12)	277.0	NM_028493	73296.0	Mm.276200	NM_028493	ENSMUSG00000021589	Rhobtb3	1700040C17Rik|2610033K01Rik|4930503C18Rik|AI317148|AW208826|mKIAA0878	Rho-related BTB domain containing 3	protein-coding	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr10-25395553-3	chr10	25395051	25396051	+	863.8999630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 1 of 16)	intron (NM_001358754, intron 1 of 16)	-12817.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-26465769-4	chr12	26465264	26466264	+	863.8916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	-3451.0	NM_020557	22169.0	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	3.5	8.0	7.0	3.0	19.0	20.0
Merged-chr11-100730676-4	chr11	100730177	100731177	+	863.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305003, intron 1 of 5)	intron (NM_001305003, intron 1 of 5)	7538.0	NM_024456	19345.0	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-14362869-4	chr16	14362413	14363413	+	863.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008576, intron 1 of 30)	intron (NM_008576, intron 1 of 30)	1355.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	3.5	4.5	20.5	3.5	5.0	10.0
Merged-chr15-97361867-4	chr15	97361398	97362398	+	863.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 4 of 5)	intron (NM_172293, intron 4 of 5)	-114611.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97022025-4	chr11	97021574	97022574	+	863.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_133649, exon 1 of 2)	non-coding (NR_133649, exon 1 of 2)	4344.0	NR_133649	100127433.0	Mm.156282	NR_133649	ENSMUSG00000087067	Gm11532	Sp6os	predicted gene 11532	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43474208-5	chr4	43473699	43474699	+	863.863342	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9510.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	0.5	9.5	1.5	1.0	1.5	2.5
Merged-chr8-33271946-3	chr8	33271454	33272454	+	863.861145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011721, intron 23 of 33)	intron (NM_011721, intron 23 of 33)	113573.0	NM_001122822	22427.0	Mm.228805	NM_011721	ENSMUSG00000031583	Wrn	AI846146	Werner syndrome RecQ like helicase	protein-coding	1.5	1.5	2.0	1.5	1.5	2.0
Merged-chr1-151932369-4	chr1	151931861	151932861	+	863.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 3 of 5)	intron (NM_197990, intron 3 of 5)	157959.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55652941-3	chr12	55652440	55653440	+	863.8444210000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003719, intron 36 of 39)	intron (NM_001003719, intron 36 of 39)	54023.0	NM_020287	56856.0	Mm.114886	NM_020287	ENSMUSG00000045440	Insm2	Mlt1	insulinoma-associated 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34920003-2	chr7	34919503	34920503	+	863.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 1 of 14)	intron (NM_008820, intron 1 of 14)	7596.0	NM_008820	18624.0	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81828578-2	chr7	81828078	81829078	+	863.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_146193, intron 1 of 7)	intron (NM_146193, intron 1 of 7)	853.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64956534-2	chr9	64956034	64957034	+	863.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4298.0	NM_001077631	69882.0	Mm.272616	NM_175153	ENSMUSG00000034263	Ints14	2010321M09Rik|Vwa9	integrator complex subunit 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62519072-2	chr4	62518572	62519572	+	863.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008525, intron 1 of 11)	intron (NM_008525, intron 1 of 11)	837.0	NM_001276446	17025.0	Mm.6988	NM_008525	ENSMUSG00000028393	Alad	ALADH|Lv	aminolevulinate, delta-, dehydratase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19005478-3	chr7	19004976	19005976	+	863.8333130000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_178757, exon 1 of 1)	exon (NM_178757, exon 1 of 1)	1411.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	1.5	0.0	1.0	0.0	4.5	0.0
Merged-chr2-26476214-3	chr2	26475706	26476706	+	863.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 14 of 33)	intron (NM_008714, intron 14 of 33)	-6087.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13154337-3	chr8	13153835	13154835	+	863.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-4826.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11456056-3	chr8	11455556	11456556	+	863.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	MTE2b|LTR|ERVL-MaLR	-21873.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4118698-4	chr11	4118213	4119213	+	863.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144520)	promoter-TSS (NM_144520)	16.0	NM_144520	67815.0	Mm.253922	NM_144520	ENSMUSG00000003585	Sec14l2	1300013M05Rik|Spf|TAP	SEC14-like lipid binding 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180262867-2	chr1	180262367	180263367	+	863.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6567.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60671347-3	chr13	60670881	60671881	+	863.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	69170.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	169.0	356.5	264.5	172.0	330.5	251.5
Merged-chr10-39450513-4	chr10	39450006	39451006	+	863.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	L2a|LINE|L2	80707.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-94716916-4	chr9	94716472	94717472	+	863.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 4 of 15)	Lx9|LINE|L1	-34857.0	NR_106116	102465763.0		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	10.0	12.0	8.0	5.0	20.0	14.0
Merged-chr9-70194825-4	chr9	70194344	70195344	+	863.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-12506.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106020043-3	chr1	106019541	106020541	+	863.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122675, intron 8 of 12)	intron (NM_001122675, intron 8 of 12)	29635.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0.0	7.0	6.5	0.0	7.0	6.5
Merged-chr9-115313871-3	chr9	115313344	115314344	+	863.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3423.0	NM_024222	68292.0	Mm.296158	NM_024222	ENSMUSG00000032437	Stt3b	1300006C19Rik|Simp	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	protein-coding	47.0	83.0	64.0	0.0	3.5	4.5
Merged-chr2-167752191-2	chr2	167751691	167752691	+	863.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	61014.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5690585-2	chr19	5690085	5691085	+	863.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_022012, exon 3 of 12)	exon (NM_022012, exon 3 of 12)	1454.0	NM_022012	26403.0	Mm.185026	NM_022012	ENSMUSG00000004054	Map3k11	2610017K16Rik|Mlk3|PTK1|SPRK	mitogen-activated protein kinase kinase kinase 11	protein-coding	4.0	9.0	2.5	2.5	11.5	5.5
Merged-chr7-99887510-4	chr7	99886987	99887987	+	863.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164258, intron 8 of 18)	intron (NM_001164258, intron 8 of 18)	28269.0	NM_001164258	446101.0	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr7-123333267-2	chr7	123332767	123333767	+	863.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	36648.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95320435-3	chr8	95319904	95320904	+	863.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199455, intron 4 of 7)	intron (NM_199455, intron 4 of 7)	8806.0	NM_199455	73407.0	Mm.472783	NM_028532	ENSMUSG00000090206	Tepp	1700055M20Rik	testis, prostate and placenta expressed	protein-coding	0.0	0.0	4.0	0.0	0.0	0.5
Merged-chr2-91138758-4	chr2	91138275	91139275	+	863.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177719, intron 33 of 34)	intron (NM_001177719, intron 33 of 34)	20631.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	0.5	4.0	3.0	0.0	1.5	3.0
Merged-chr18-69345944-4	chr18	69345358	69346358	+	863.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361126)	promoter-TSS (NM_001361126)	137.0	NM_001361127	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	26.5	56.5	29.0	20.0	43.0	22.5
Merged-chr18-78805216-4	chr18	78804705	78805705	+	863.729126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053099, intron 4 of 5)	T-rich|Low_complexity|Low_complexity	-208255.0	NM_207651	27411.0	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-40869385-4	chr17	40868872	40869872	+	863.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER67C|LTR|ERV1	11186.0	NM_027834	71583.0	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding	2.0	4.5	6.0	0.0	1.5	0.0
Merged-chr13-109260575-5	chr13	109260134	109261134	+	863.67334	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-64110.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.5	2.0	2.0	5.5	1.0	0.5
Merged-chr6-124445676-3	chr6	124445174	124446174	+	863.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346656, intron 12 of 17)	intron (NM_001346656, intron 12 of 17)	17070.0	NM_001346656	232370.0	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5844890-3	chr13	5844389	5845389	+	863.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13203.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-38373895-2	chr3	38373395	38374395	+	863.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110921.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-91032634-3	chr10	91032137	91033137	+	863.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042558, intron 16 of 26)	intron (NM_001042558, intron 16 of 26)	50106.0	NM_001042558	11783.0	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	1.0	4.5	0.5	1.0	0.0	6.0
Merged-chr11-83969249-1	chr11	83968749	83969749	+	863.6666869999999	f0_balb.idr	intron (NM_194341, intron 1 of 19)	B3|SINE|B2	4818.0	NM_194341	217030.0	Mm.82680	NM_194341	ENSMUSG00000034940	Synrg	Ap1gbp1|SYNG	synergin, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135475658-3	chr5	135475152	135476152	+	863.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	MTD|LTR|ERVL-MaLR	69470.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165876394-3	chr2	165875909	165876909	+	863.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001291158, exon 1 of 24)	5' UTR (NM_001291158, exon 1 of 24)	2028.0	NM_001291158	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	28.0	97.0	83.0	15.5	66.5	27.5
Merged-chr13-5920573-3	chr13	5920064	5921064	+	863.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	59075.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45898343-3	chr7	45897849	45898849	+	863.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144801, intron 2 of 7)	intron (NM_144801, intron 2 of 7)	1280.0	NM_144801	70209.0	Mm.163766	NM_144801	ENSMUSG00000002781	Tmem143	2310076O21Rik|AI481604	transmembrane protein 143	protein-coding	18.0	5.0	1.5	0.0	7.0	0.5
Merged-chr19-53942125-2	chr19	53941625	53942625	+	863.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195348, intron 2 of 3)	intron (NM_001195348, intron 2 of 3)	-2181.0	NM_001168505	56392.0	Mm.228669	NM_019658	ENSMUSG00000024976	Shoc2	AU017287|Sur8|mKIAA0862	soc-2 (suppressor of clear) homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-145738630-2	chr3	145738130	145739130	+	863.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-20062.0	NM_026993	69219.0	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87750203-4	chr11	87749738	87750738	+	863.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6626.0	NR_029555	387160.0		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	117.5	413.5	282.0	152.0	393.5	188.0
Merged-chr14-73383610-3	chr14	73383090	73384090	+	863.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008410, intron 1 of 5)	PB1D10|SINE|Alu	1699.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51800961-3	chr11	51800423	51801423	+	863.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37260.0	NM_025535	66397.0	Mm.196592	NM_025535	ENSMUSG00000020386	Sar1b	2310075M17Rik|2900019I22Rik|CMRD|Sara1b|Sara2|Sarb	secretion associated Ras related GTPase 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-9082846-3	chr9	9082351	9083351	+	863.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027823, intron 4 of 22)	LTR16E2|LTR|ERVL	-153437.0	NR_045754	100579151.0	Mm.412450	NR_045754	ENSMUSG00000085253	Gm16833	-	predicted gene, 16833	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-172442274-3	chr2	172441737	172442737	+	863.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025542, intron 1 of 8)	intron (NM_025542, intron 1 of 8)	1659.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-43387429-2	chr11	43386929	43387929	+	863.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12968.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113553775-4	chr13	113553277	113554277	+	863.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2-int|LTR|ERVL-MaLR	-50933.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123125826-3	chr5	123125313	123126313	+	863.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175092, intron 2 of 4)	intron (NM_175092, intron 2 of 4)	6816.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63899341-4	chr4	63898849	63899849	+	863.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38065.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32123720-4	chr12	32123227	32124227	+	863.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62448.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	1.5	2.0	10.0	1.5	12.0	10.0
Merged-chr17-56939367-3	chr17	56938865	56939865	+	863.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	-3977.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61281268-3	chr10	61280773	61281773	+	863.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7835.0	NM_001081127	237360.0	Mm.333252	NM_001081127	ENSMUSG00000059901	Adamts14	Adamts-14|TS14	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133675918-4	chr4	133675401	133676401	+	863.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2735.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	31.0	52.0	39.5	11.5	86.0	25.0
Merged-chr16-50630640-4	chr16	50630158	50631158	+	863.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040566, intron 3 of 4)	intron (NR_040566, intron 3 of 4)	-39504.0	NM_027046	69339.0	Mm.422869	NM_027046	ENSMUSG00000050685	Ccdc54	1700007N18Rik|AI644412|BB013989|NYD-SP17	coiled-coil domain containing 54	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79372689-4	chr2	79372230	79373230	+	863.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001048176, intron 2 of 12)	(TG)n|Simple_repeat|Simple_repeat	56258.0	NM_001048176	228094.0	Mm.440704	NM_001033295	ENSMUSG00000075256	Cerkl	Gm1958|Rp26	ceramide kinase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125113485-6	chr8	125112982	125113982	+	863.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 3 of 12)	intron (NM_174854, intron 3 of 12)	59287.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	11.0	18.5	8.0	10.0	7.0	14.5
Merged-chr7-102771170-4	chr7	102770654	102771654	+	863.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3372.0	NM_147092	259096.0	Mm.377839	NM_147092	ENSMUSG00000073966	Olfr561	MOR14-2	olfactory receptor 561	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-96213427-3	chr7	96212933	96213933	+	863.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310760, intron 1 of 32)	intron (NM_001310760, intron 1 of 32)	1762.0	NM_001310760	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-56100178-4	chr9	56099682	56100682	+	863.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011193, intron 1 of 14)	ORR1F|LTR|ERVL-MaLR	10206.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26453402-2	chr17	26452902	26453902	+	863.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38437.0	NM_001081656	240055.0	Mm.133211	NM_001081656	ENSMUSG00000034413	Neurl1b	C230078M08Rik|EG240055	neuralized E3 ubiquitin protein ligase 1B	protein-coding	0.5	0.0	0.5	0.5	1.0	8.0
Merged-chr7-78911648-2	chr7	78911148	78912148	+	863.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001162939)	TTS (NM_001162939)	-1776.0	NM_001291221	57444.0	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126782879-2	chr7	126782384	126783384	+	863.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011538, exon 3 of 8)	exon (NM_011538, exon 3 of 8)	1401.0	NM_011538	21389.0	Mm.727	NM_011538	ENSMUSG00000030699	Tbx6	rv	T-box 6	protein-coding	0.0	0.0	1.0	0.0	5.0	0.0
Merged-chr3-88831780-2	chr3	88831255	88832255	+	863.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_015498, intron 1 of 1)	intron (NR_015498, intron 1 of 1)	732.0	NR_015498	319830.0	Mm.400394	NR_015498		1500004A13Rik	5430404N14Rik|BB132176	RIKEN cDNA 1500004A13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-127162415-2	chr6	127161915	127162915	+	863.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040275, intron 1 of 1)	intron (NR_040275, intron 1 of 1)	-11367.0	NM_009829	12444.0	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr7-3703367-2	chr7	3702867	3703867	+	863.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029767)	promoter-TSS (NM_029767)	-674.0	NM_029767	76846.0	Mm.13944	NM_029767	ENSMUSG00000006333	Rps9	3010033P07Rik|AL022771|AL022885	ribosomal protein S9	protein-coding	49.0	85.5	54.5	24.0	114.5	80.5
Merged-chr11-76028303-2	chr11	76027803	76028803	+	863.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029658)	promoter-TSS (NM_029658)	-521.0	NM_029658	76566.0	Mm.34131	NM_029658	ENSMUSG00000020846	Rflnb	1500005K14Rik|Fam101b|RefilinB|cfm	refilin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102690574-2	chr11	102690074	102691074	+	863.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025918, intron 2 of 4)	RSINE1|SINE|B4	7151.0	NM_025918	52715.0	Mm.277638	NM_025918	ENSMUSG00000020925	Ccdc43	2610001E01Rik|D11Ertd707e	coiled-coil domain containing 43	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89088740-2	chr3	89088240	89089240	+	863.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028188, intron 8 of 10)	intron (NM_028188, intron 8 of 10)	1291.0	NM_001083808	72296.0	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49601346-1	chr7	49600846	49601846	+	863.5	f0_balb.idr	intron (NM_175272, intron 36 of 37)	intron (NM_175272, intron 36 of 37)	35489.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-96484996-1	chr7	96484496	96485496	+	863.5	f0_balb.idr	intron (NM_011858, intron 3 of 32)	intron (NM_011858, intron 3 of 32)	-143032.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	2.0	4.5	1.0	10.5	8.0	8.0
Merged-chr11-8626350-2	chr11	8625850	8626850	+	863.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	38185.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69906320-2	chr8	69905820	69906820	+	863.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145596)	TTS (NM_145596)	-3762.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	0.0	0.0	4.0	0.0	0.0	2.5
Merged-chr10-43818712-2	chr10	43818212	43819212	+	863.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7195.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23167293-2	chr16	23166793	23167793	+	863.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7987.0	NR_155420	105246089.0	Mm.390905	NR_155420		C730014E05Rik	-	RIKEN cDNA C730014E05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-83353980-4	chr10	83353435	83354435	+	863.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6286.0	NM_026579	28109.0	Mm.196210	NM_026579	ENSMUSG00000020255	D10Wsu102e	AI747614|C430041I18Rik	DNA segment, Chr 10, Wayne State University 102, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133117715-2	chr4	133117215	133118215	+	863.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12918.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	17.0	35.0	20.0	6.0	23.0	18.5
Merged-chr6-108781447-2	chr6	108780943	108781943	+	863.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1616.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	58.5	64.0	68.0	33.0	94.0	67.0
Merged-chr6-84640823-3	chr6	84640330	84641330	+	863.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 20 of 21)	intron (NM_177077, intron 20 of 21)	-46922.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70620927-2	chr8	70620427	70621427	+	863.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153074)	TTS (NM_153074)	4083.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	32.0	33.0	25.5	33.5	17.5	31.0
Merged-chr10-8791945-2	chr10	8791445	8792445	+	863.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 4 of 19)	intron (NM_175155, intron 4 of 19)	94125.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84159051-2	chr12	84158551	84159551	+	863.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163502, exon 8 of 13)	exon (NM_001163502, exon 8 of 13)	-10562.0	NM_027438	70481.0	Mm.444348	NM_027438	ENSMUSG00000054383	Pnma1	5730402C15Rik	paraneoplastic antigen MA1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172643244-2	chr1	172642744	172643744	+	863.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10270.0	NM_026725	68440.0	Mm.33024	NM_026725	ENSMUSG00000026544	Dusp23	1300005N15Rik|LDP-3	dual specificity phosphatase 23	protein-coding	2.5	1.5	1.0	2.5	3.0	4.5
Merged-chr1-91057126-2	chr1	91056626	91057626	+	863.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 1 of 22)	IMPB_01|Satellite|Satellite	3682.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66058684-2	chr9	66058184	66059184	+	863.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1485.0	NM_011149	19035.0	Mm.335249	NM_011149	ENSMUSG00000032383	Ppib	AA408962|AA553318|AI844835|Cphn-2|Cphn2|CyP-20b	peptidylprolyl isomerase B	protein-coding	2.0	0.0	0.0	5.5	2.0	1.0
Merged-chr10-8883305-2	chr10	8882805	8883805	+	863.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	2765.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82564555-2	chr18	82564055	82565055	+	863.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025251, intron 2 of 6)	intron (NM_001025251, intron 2 of 6)	10047.0	NM_001025254	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-44167173-2	chr12	44166673	44167673	+	863.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42895.0	NM_013760	27362.0	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	1.5	0.0	10.5	1.0	0.0	4.0
Merged-chr8-71752475-4	chr8	71751962	71752962	+	863.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26781.0	NM_028715	74015.0	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	32.0	105.0	83.0	38.0	29.0	52.5
Merged-chr4-145216140-2	chr4	145215640	145216640	+	863.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 9 of 9)	intron (NM_011610, intron 9 of 9)	-21135.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6126409-2	chr19	6125909	6126909	+	863.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026912, intron 1 of 7)	B3|SINE|B2	1806.0	NM_026912	69024.0	Mm.329629	NM_026912	ENSMUSG00000024787	Snx15	1500032B08Rik|E130013C21Rik	sorting nexin 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11421746-2	chr16	11421246	11422246	+	863.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 11 of 20)	intron (NM_028964, intron 11 of 20)	16098.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136832451-2	chr6	136831951	136832951	+	863.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039558, intron 1 of 1)	intron (NM_001039558, intron 1 of 1)	2999.0	NM_001039558	654818.0	Mm.386899	NM_001039558	ENSMUSG00000043298	Smco3	C030030A07Rik	single-pass membrane protein with coiled-coil domains 3	protein-coding	23.5	45.5	48.0	3.5	7.0	3.5
Merged-chr9-21507256-2	chr9	21506756	21507756	+	863.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001324510)	TTS (NM_001324510)	2638.0	NM_001324510	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45815445-2	chr7	45814945	45815945	+	863.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1129.0	NM_001112701	19158.0	Mm.272130	NM_011181	ENSMUSG00000003269	Cyth2	ARNO|CLM2|Pscd2	cytohesin 2	protein-coding	0.5	0.0	0.5	0.0	2.0	0.0
Merged-chr1-160081173-2	chr1	160080682	160081682	+	863.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3197.0	NR_038031	75255.0	Mm.414845	NR_038030	ENSMUSG00000026729	4930562F07Rik	-	RIKEN cDNA 4930562F07 gene	ncRNA	0.0	1.5	8.5	7.0	6.0	5.0
Merged-chr11-100713905-4	chr11	100713437	100714437	+	863.4874880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029307)	promoter-TSS (NM_029307)	87.0	NM_029307	75482.0	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46575555-8	chr18	46574967	46575967	+	863.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173394)	promoter-TSS (NM_173394)	-934.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-143985263-4	chr1	143984778	143985778	+	863.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18871.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135981115-3	chr4	135980586	135981586	+	863.4722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025411, intron 3 of 5)	L1MA5|LINE|L1	6158.0	NM_025411	66193.0	Mm.29131	NM_025411	ENSMUSG00000028669	Pithd1	1110049F12Rik|AA408179|Trp26	PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94944870-4	chr10	94944377	94945377	+	863.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018797)	promoter-TSS (NM_018797)	-299.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93477703-3	chr2	93477197	93478197	+	863.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14747.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0.0	6.0	0.0	0.0	0.0	0.0
Merged-chr17-34693297-3	chr17	34692821	34693821	+	863.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031176, intron 12 of 32)	intron (NM_031176, intron 12 of 32)	22786.0	NM_031176	81877.0	Mm.290527	NM_031176	ENSMUSG00000033327	Tnxb	Tn-mhc|Tnx	tenascin XB	protein-coding	11.5	10.5	9.0	12.0	2.0	1.5
Merged-chr7-19175847-4	chr7	19175348	19176348	+	863.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347582)	promoter-TSS (NM_001347582)	-573.0	NM_001347582	72205.0	Mm.154121	NM_028153	ENSMUSG00000040811	Eml2	1600029N02Rik|EMAP-2	echinoderm microtubule associated protein like 2	protein-coding	6.0	0.5	1.5	3.0	3.5	0.0
Merged-chr16-11704312-4	chr16	11703817	11704817	+	863.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 18 of 20)	intron (NM_028964, intron 18 of 20)	-75385.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-136235722-4	chr3	136235185	136236185	+	863.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 5 of 16)	Lx8b|LINE|L1	90381.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	0.5	6.5	3.0	1.5	13.0	9.5
Merged-chr1-171171319-3	chr1	171170777	171171777	+	863.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15759.0	NM_001315500	17528.0	Mm.9986	NM_008623	ENSMUSG00000056569	Mpz	Mpp|P-zero|P0	myelin protein zero	protein-coding	6.0	2.5	1.0	0.0	1.5	0.5
Merged-chr11-70848645-4	chr11	70848125	70849125	+	863.3875119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291143, intron 2 of 18)	B1_Mus2|SINE|Alu	3864.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	13.0	15.5	11.5	4.5	12.0	10.0
Merged-chr18-80260560-4	chr18	80260082	80261082	+	863.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025861, intron 2 of 5)	intron (NM_025861, intron 2 of 5)	4276.0	NM_025861	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91840364-4	chr16	91839905	91840905	+	863.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 18 of 28)	intron (NM_001110275, intron 18 of 28)	91225.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84180916-5	chr17	84180372	84181372	+	863.3666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7075.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30709952-4	chr5	30709452	30710452	+	863.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1612.0	NM_001356949	65254.0	Mm.27732	NM_023047	ENSMUSG00000029168	Dpysl5	CRAM|CRMP-5|Crmp5	dihydropyrimidinase-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124007713-4	chr8	124007226	124008226	+	863.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357315, intron 3 of 4)	RMER16|LTR|ERVK	13330.0	NM_001357315	102162.0	Mm.291777	NM_133966	ENSMUSG00000038697	Taf5l	1110005N04Rik|AI849020	TATA-box binding protein associated factor 5 like	protein-coding	17.0	25.5	13.5	16.0	33.0	33.5
Merged-chr1-39521058-2	chr1	39520558	39521558	+	863.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B1|LTR|ERVK	-14643.0	NM_028043	52846.0	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111485606-2	chr12	111485106	111486106	+	863.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033248, exon 1 of 1)	exon (NM_001033248, exon 1 of 1)	217.0	NM_001033248	212539.0	Mm.81916	NM_001033248	ENSMUSG00000010529	Gm266	-	predicted gene 266	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105052225-4	chr3	105051762	105052762	+	863.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 1 of 5)	intron (NM_030249, intron 1 of 5)	691.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132620762-3	chr7	132620300	132621300	+	863.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 1 of 6)	intron (NM_029609, intron 1 of 6)	10157.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30677354-3	chr2	30676888	30677888	+	863.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136917, intron 1 of 3)	intron (NR_136917, intron 1 of 3)	623.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120709443-3	chr9	120708958	120709958	+	863.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	132127.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24614141-4	chr13	24613642	24614642	+	863.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286101)	promoter-TSS (NM_001286101)	-464.0	NM_001286101	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81432361-3	chr10	81431867	81432867	+	863.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5194.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-19724162-3	chr5	19723640	19724640	+	863.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 2 of 22)	intron (NM_001170746, intron 2 of 22)	-183378.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-139591438-3	chr2	139590930	139591930	+	863.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356507, intron 8 of 11)	intron (NM_001356507, intron 8 of 11)	-86748.0	NM_001276489	319909.0	Mm.41113	NM_001126490	ENSMUSG00000074766	Ism1	5430433G21Rik|Ism	isthmin 1, angiogenesis inhibitor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91668119-3	chr12	91667567	91668567	+	863.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	-77580.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-93358513-3	chr15	93358034	93359034	+	863.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21599.0	NM_024189	67057.0	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44024945-3	chr10	44024445	44025445	+	863.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20099.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182461510-3	chr1	182461004	182462004	+	863.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173378, intron 17 of 17)	intron (NM_173378, intron 17 of 17)	52337.0	NM_173378	209456.0	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160288103-1	chr2	160287603	160288603	+	863.3333130000001	f0_balb.idr	Intergenic	Intergenic	39391.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0.0	4.0	3.5	0.0	5.0	0.0
Merged-chr9-72955810-3	chr9	72955324	72956324	+	863.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2961.0	NM_026314	67685.0	Mm.31817	NM_026314	ENSMUSG00000092192	Dyx1c1	1700010I24Rik|Dnaaf4|EKN1|b2b811.1Clo|b2b811Clo	dyslexia susceptibility 1 candidate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-13293515-4	chr1	13293041	13294041	+	863.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	78888.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	12.0	29.5	27.0	11.5	41.5	17.5
Merged-chr11-106751655-4	chr11	106751162	106752162	+	863.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001271372, exon 2 of 7)	exon (NM_001271372, exon 2 of 7)	436.0	NM_001033435	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67101513-4	chr15	67101003	67102003	+	863.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75379.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	1.5	0.0	2.5	0.5	0.0	2.0
Merged-chr16-4608015-4	chr16	4607527	4608527	+	863.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031184, intron 1 of 6)	intron (NM_031184, intron 1 of 6)	13314.0	NM_031184	83396.0	Mm.134072	NM_031184	ENSMUSG00000014303	Glis2	Gli5|Klf16|Nkl	GLIS family zinc finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-28606872-4	chr13	28606345	28607345	+	863.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045054, intron 6 of 7)	L1MB7|LINE|L1	104028.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88259859-4	chr7	88259360	88260360	+	863.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-18225.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8621870-4	chr11	8621390	8622390	+	863.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	42645.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	15.0	42.5	19.0	14.5	40.5	20.5
Merged-chr18-32377765-3	chr18	32377278	32378278	+	863.2698359999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045403, exon 1 of 3)	non-coding (NR_045403, exon 1 of 3)	506.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	20.0	81.5	31.5	36.5	42.5	30.0
Merged-chr2-158180943-4	chr2	158180436	158181436	+	863.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11072.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107876196-4	chr4	107875668	107876668	+	863.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033496, exon 21 of 21)	non-coding (NR_033496, exon 21 of 21)	-3587.0	NM_001282737	17149.0	Mm.808	NM_001282737	ENSMUSG00000028609	Magoh	Mago-m|Mos2	mago homolog, exon junction complex core component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121235690-2	chr11	121235190	121236190	+	863.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1546.0	NM_026272	67608.0	Mm.291832	NM_026272	ENSMUSG00000000056	Narf	4430402O11Rik	nuclear prelamin A recognition factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-97113678-4	chr5	97113152	97114152	+	863.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-2056.0	NM_001359913	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90265767-4	chr7	90265282	90266282	+	863.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183293)	promoter-TSS (NM_183293)	-350.0	NR_111924	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr5-9162422-3	chr5	9161935	9162935	+	863.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011806)	promoter-TSS (NM_011806)	-659.0	NR_152861	23857.0	Mm.22480	NM_011806	ENSMUSG00000042508	Dmtf1	Dimp|Dmp1	cyclin D binding myb-like transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41242187-4	chr19	41241709	41242709	+	863.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133352, intron 5 of 14)	intron (NM_133352, intron 5 of 14)	21795.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-20470649-4	chr5	20470150	20471150	+	863.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 10 of 22)	RMER13A|LTR|ERVK	411474.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132838270-4	chr4	132837751	132838751	+	863.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355198, intron 2 of 6)	intron (NM_001355198, intron 2 of 6)	4883.0	NM_001355198	100336.0	Mm.105230	NM_146154	ENSMUSG00000028882	Ppp1r8	6330548N22Rik|AU044684|NIPP1	protein phosphatase 1, regulatory (inhibitor) subunit 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73910686-4	chr2	73910267	73911267	+	863.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301721, intron 2 of 4)	CpG	559.0	NM_175015	228033.0	Mm.2966	NM_175015	ENSMUSG00000018770	Atp5g3	6030447M23	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19594569-5	chr10	19594024	19595024	+	863.176208	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010511, intron 1 of 6)	intron (NM_010511, intron 1 of 6)	2575.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	24.5	39.5	19.0	23.0	41.5	19.0
Merged-chr19-10034966-3	chr19	10034453	10035453	+	863.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153790, exon 10 of 11)	non-coding (NR_153790, exon 10 of 11)	-6595.0	NM_021890	60527.0	Mm.253875	NM_021890	ENSMUSG00000024664	Fads3	AI464531	fatty acid desaturase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126497176-2	chr8	126496676	126497676	+	863.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22111.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-84197595-3	chr7	84197062	84198062	+	863.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45669.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-53356964-3	chr9	53356466	53357466	+	863.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176846, intron 4 of 5)	intron (NM_176846, intron 4 of 5)	-27057.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45084691-3	chr9	45084199	45085199	+	863.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005421, intron 3 of 10)	intron (NM_001005421, intron 3 of 10)	5516.0	NM_001005421	270152.0	Mm.190461	NM_001005421	ENSMUSG00000048534	Jaml	AMICA|Amica1|Crea7|Gm638	junction adhesion molecule like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83485471-4	chr17	83484965	83485965	+	863.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28868.0	NM_009187	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-68825009-6	chr2	68824459	68825459	+	863.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36482.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43536741-4	chr17	43536236	43537236	+	863.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254953, intron 2 of 2)	intron (NM_001254953, intron 2 of 2)	6903.0	NM_001254953	100043332.0	Mm.17626	NM_001254953	ENSMUSG00000096140	Ankrd66	AU041848|D730048J04Rik|Gm4368	ankyrin repeat domain 66	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-35134722-3	chr6	35134190	35135190	+	863.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164411)	promoter-TSS (NM_001164411)	-953.0	NM_001164414	53621.0	Mm.214525	NM_016877	ENSMUSG00000038784	Cnot4	Not4|Not4h|Not4hp	CCR4-NOT transcription complex, subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-119610598-4	chr10	119610072	119611072	+	863.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133442, intron 1 of 21)	intron (NM_133442, intron 1 of 21)	151127.0	NR_045359	75321.0	Mm.402041	NR_045359	ENSMUSG00000084764	Grip1os2	4930564G21Rik	glutamate receptor interacting protein 1, opposite strand 2	ncRNA	2.0	0.0	2.0	4.0	0.0	2.0
Merged-chr18-32378348-4	chr18	32377857	32378857	+	863.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045403)	promoter-TSS (NR_045403)	-73.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	5.0	13.0	10.5	4.5	14.0	14.5
Merged-chr17-46371915-2	chr17	46371415	46372415	+	863.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	-11851.0	NM_207671	57908.0	Mm.439916	NM_021346	ENSMUSG00000015597	Zfp318	2610034E08Rik|D530032D06Rik|TZF|Znf318	zinc finger protein 318	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108763590-3	chr12	108763029	108764029	+	863.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29782.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82118898-4	chr15	82118411	82119411	+	863.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028897, intron 26 of 30)	RLTR22_Mur|LTR|ERVK	-9011.0	NM_172428	76457.0	Mm.440373	NM_172428	ENSMUSG00000068114	Ccdc134	2310042L06Rik|AW208859	coiled-coil domain containing 134	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55827968-5	chr19	55827462	55828462	+	863.1199949999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-67359.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-99270144-3	chr4	99269644	99270644	+	863.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75997.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	0.0	2.5	5.5	5.5	1.0	1.0
Merged-chr2-128769203-3	chr2	128768705	128769705	+	863.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 8 of 18)	RLTR11B|LTR|ERVK	-49098.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	20.0	21.0	15.0	16.0	31.5	23.0
Merged-chr7-99090091-3	chr7	99089565	99090565	+	863.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 4 of 14)	intron (NM_178635, intron 4 of 14)	51079.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	19.5	28.5	28.5	30.5	32.5	36.0
Merged-chr11-98002893-3	chr11	98002423	98003423	+	863.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001282977, exon 14 of 14)	exon (NM_001282977, exon 14 of 14)	-6750.0	NR_152188	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44794587-3	chr16	44794089	44795089	+	863.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021325, exon 7 of 7)	3' UTR (NM_021325, exon 7 of 7)	-26139.0	NM_207244	239849.0	Mm.445045	NM_207244	ENSMUSG00000062082	Cd200r4	F630107N04Rik|MCD200RLa	CD200 receptor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170992767-3	chr1	170992234	170993234	+	863.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-16663.0	NM_001077189	14130.0	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11462301-4	chr8	11461876	11462876	+	863.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-15553.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-96591662-3	chr4	96591082	96592082	+	863.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028979)	promoter-TSS (NM_028979)	-97.0	NM_028979	74519.0	Mm.458387	NM_028979	ENSMUSG00000015224	Cyp2j9	8430417E17Rik	cytochrome P450, family 2, subfamily j, polypeptide 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99084386-4	chr12	99083887	99084887	+	863.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78421.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70769720-4	chr14	70769203	70770203	+	863.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3075.0	NM_023045	65246.0	Mm.152987	NM_023045	ENSMUSG00000022100	Xpo7	4930506C02Rik|BB164534|Ranbp16|exp7	exportin 7	protein-coding	2.5	0.0	3.5	8.5	8.0	0.5
Merged-chr15-80257110-2	chr15	80256610	80257610	+	863.0833130000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_001287180, exon 4 of 4)	exon (NM_001287180, exon 4 of 4)	1926.0	NM_009716	11911.0	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	12.5	25.5	9.5	6.0	3.0	18.5
Merged-chr15-99121053-4	chr15	99120549	99121549	+	863.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17D2|LTR|ERVK	-5796.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55552963-3	chr19	55552441	55553441	+	863.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	149263.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	3.0	6.5	6.5	2.5	4.5	5.5
Merged-chr4-129276657-4	chr4	129276148	129277148	+	863.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10973.0	NM_023485	68828.0	Mm.132243	NM_023485	ENSMUSG00000001333	Sync	1110057H03Rik|SNIP4	syncoilin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82346908-4	chr15	82346470	82347470	+	863.035706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026914, intron 1 of 2)	intron (NM_026914, intron 1 of 2)	924.0	NM_026914	69029.0	Mm.260042	NM_026914	ENSMUSG00000022452	Smdt1	1500032L24Rik|Emre	single-pass membrane protein with aspartate rich tail 1	protein-coding	10.0	36.5	29.5	20.0	27.5	18.5
Merged-chr6-72428219-4	chr6	72427706	72428706	+	863.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019802, intron 10 of 14)	intron (NM_019802, intron 10 of 14)	-10477.0	NR_046011	78108.0	Mm.440743	NR_046011	ENSMUSG00000108591	Particl	4930414L22Rik|AI449819	promoter of Mat2a antisense radiation induced circulating long non-coding RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-153835810-3	chr3	153835301	153836301	+	863.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-8446.0	NM_025758	66772.0	Mm.116960	NM_025758	ENSMUSG00000038997	Asb17	4933436O18Rik	ankyrin repeat and SOCS box-containing 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7041178-4	chr10	7040694	7041694	+	863.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18009.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	6.5	25.0	14.5	16.0	73.0	44.5
Merged-chr4-128726553-2	chr4	128726053	128727053	+	863.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 9 of 14)	MER58B|DNA|hAT-Charlie	-1018.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr15-94589188-2	chr15	94588688	94589688	+	863.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008971, intron 1 of 8)	intron (NM_008971, intron 1 of 8)	636.0	NM_008971	19230.0	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107023025-3	chr13	107022532	107023532	+	863.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145779)	promoter-TSS (NM_001145779)	462.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-174222347-2	chr1	174221884	174222884	+	863.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_011465, intron 36 of 51)	MTD|LTR|ERVL-MaLR	28592.0	NM_146715	258710.0	Mm.377647	NM_146715	ENSMUSG00000050788	Olfr419	MOR267-6	olfactory receptor 419	protein-coding	12.0	1.5	9.5	1.5	1.5	17.0
Merged-chr17-34239321-3	chr17	34238835	34239835	+	863.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010389, intron 1 of 5)	intron (NM_010389, intron 1 of 5)	430.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	108.5	223.0	102.5	27.5	59.0	46.5
Merged-chr8-3674211-2	chr8	3673711	3674711	+	863.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1820.0	NM_001357661	100503924.0	Mm.415621	NM_001357661	ENSMUSG00000089665	Fcor	2400009B08Rik	Foxo1 corepressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22444117-2	chr16	22443617	22444617	+	863.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4547.0	NM_023794	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-8689474-4	chr8	8688919	8689919	+	863.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_106114)	TTS (NR_106114)	743.0	NR_106114	102465762.0		NR_106114	ENSMUSG00000098917	Mir7654	Gm27748|mmu-mir-7654	microRNA 7654	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125675717-1	chr7	125675217	125676217	+	863.0	f1_balb.idr	intron (NM_207239, intron 10 of 36)	intron (NM_207239, intron 10 of 36)	31971.0	NM_207239	233863.0	Mm.294173	NM_207239	ENSMUSG00000032777	Gtf3c1	-	general transcription factor III C 1	protein-coding	2.5	2.5	1.0	1.5	0.0	5.0
Merged-chr1-52764697-1	chr1	52764197	52765197	+	863.0	f0_balb.idr	Intergenic	Intergenic	-37339.0	NM_001357464	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	15.0	85.5	40.5	19.5	55.5	34.5
Merged-chr2-27743615-2	chr2	27743115	27744115	+	863.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 4 of 9)	intron (NM_001290481, intron 4 of 9)	33032.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83166621-2	chr8	83166121	83167121	+	863.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111304, intron 1 of 20)	intron (NM_001111304, intron 1 of 20)	1269.0	NM_027758	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	49.5	109.5	74.5	46.5	103.0	100.0
Merged-chr11-117199715-4	chr11	117199212	117200212	+	863.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113486)	promoter-TSS (NM_001113486)	51.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32644356-3	chr16	32643866	32644866	+	863.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016788)	promoter-TSS (NM_016788)	-277.0	NM_001110147	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32910277-4	chr12	32909805	32910805	+	863.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43484.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71184035-3	chr17	71183533	71184533	+	863.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022882)	promoter-TSS (NM_022882)	55.0	NM_022882	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139323411-2	chr5	139322911	139323911	+	863.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 1 of 10)	intron (NM_172723, intron 1 of 10)	2053.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129374262-2	chr2	129373760	129374760	+	863.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_015474, intron 2 of 2)	MTC|LTR|ERVL-MaLR	-3121.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	93.5	182.5	128.5	63.5	124.5	66.0
Merged-chr6-24721470-2	chr6	24720970	24721970	+	863.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11775.0	NM_028920	74409.0	Mm.87331	NM_028920	ENSMUSG00000029679	Hyal6	4932701A20Rik|Hyal-ps1|Hyalp1	hyaluronoglucosaminidase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134122268-2	chr1	134121768	134122768	+	863.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027979, intron 1 of 11)	B4A|SINE|B4	11026.0	NM_027979	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-54921142-3	chr15	54920636	54921636	+	863.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136077)	promoter-TSS (NM_001136077)	-990.0	NM_001285994	18606.0	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70434603-4	chr11	70434111	70435111	+	863.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145429, intron 1 of 14)	intron (NM_145429, intron 1 of 14)	2031.0	NM_001271358	216869.0	Mm.203747	NM_145429	ENSMUSG00000060216	Arrb2	AI326910|AW122872|Arr3	arrestin, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166485247-2	chr2	166484747	166485747	+	863.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37796.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-15883262-2	chr19	15882762	15883762	+	863.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41360.0	NM_001205339	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43926182-2	chr7	43925677	43926677	+	863.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7594.0	NM_174865	317652.0	Mm.389896	NM_174865	ENSMUSG00000055193	Klk15	-	kallikrein related-peptidase 15	protein-coding	0.0	2.5	3.0	1.5	1.0	1.0
Merged-chr9-102779710-4	chr9	102779203	102780203	+	863.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40055.0	NR_033301	434510.0	Mm.387937	NM_001034892	ENSMUSG00000093812	Gm5627	EG434510	predicted gene 5627	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8838257-3	chr4	8837763	8838763	+	863.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 14 of 36)	(TTTTG)n|Simple_repeat|Simple_repeat	86939.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71923583-3	chr8	71923060	71924060	+	863.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133358, intron 1 of 3)	intron (NM_133358, intron 1 of 3)	735.0	NM_133358	170938.0	Mm.480419	NM_133358	ENSMUSG00000066880	Zfp617	Zfps11-6	zinc finger protein 617	protein-coding	25.0	63.0	56.0	11.5	117.0	66.0
Merged-chr11-32562515-2	chr11	32562015	32563015	+	863.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	29249.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	9.5	12.5	8.0	2.5	12.0	6.0
Merged-chr5-142462908-2	chr5	142462408	142463408	+	863.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_199068)	TTS (NM_199068)	-1023.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-88260549-2	chr18	88260049	88261049	+	863.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	633658.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77523419-2	chr15	77522919	77523919	+	863.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9896.0	NM_175391	108956.0	Mm.86391	NM_175391	ENSMUSG00000044309	Apol7c	2210421G13Rik	apolipoprotein L 7c	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80748254-2	chr10	80747754	80748754	+	863.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5979.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51903090-3	chr14	51902750	51903750	+	863.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8739.0	NM_001360269	29811.0	Mm.26722	NM_013864	ENSMUSG00000004558	Ndrg2	AI182517|AU040374|Ndr2|SYLD	N-myc downstream regulated gene 2	protein-coding	0.0	1.5	2.0	5.0	5.5	0.0
Merged-chr13-63112216-1	chr13	63111716	63112716	+	863.0	f0_balb.idr	intron (NM_001289926, intron 5 of 15)	intron (NM_001289926, intron 5 of 15)	-127813.0	NR_110520	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	18.0	9.0	2.5	1.5	5.0	2.5
Merged-chr9-96327928-1	chr9	96327428	96328428	+	863.0	f1_balb.idr	Intergenic	B3|SINE|B2	35787.0	NM_001357213	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0.0	0.5	0.5	0.0	2.0	0.0
Merged-chr1-93817939-3	chr1	93817447	93818447	+	863.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025454, intron 7 of 7)	intron (NM_025454, intron 7 of 7)	-7293.0	NM_178882	98314.0	Mm.383401	NM_178882	ENSMUSG00000073609	D2hgdh	AA408776|AA408778|AI325464	D-2-hydroxyglutarate dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-5269351-1	chr5	5268851	5269851	+	863.0	f0_balb.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	-3283.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	5.0	10.0	7.5	0.0	0.0	1.0
Merged-chr9-64086741-4	chr9	64086275	64087275	+	863.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040743, intron 2 of 2)	intron (NR_040743, intron 2 of 2)	6014.0	NR_040743	76814.0	Mm.243771	NR_040743		Scarletltr	2600006L11Rik	Scarletltr, erythroid developmental long intergenic non-protein coding transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19956750-2	chr10	19956250	19957250	+	863.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	22224.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	4.5	2.0	1.0	2.0	4.0	6.5
Merged-chr15-99028452-2	chr15	99027952	99028952	+	863.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1439.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52030690-2	chr13	52030190	52031190	+	863.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66051.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-24564599-2	chr12	24564099	24565099	+	863.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7688.0	NM_001161406	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	1.0	1.5	2.5	0.0	0.0	2.0
Merged-chr3-51719615-4	chr3	51719112	51720112	+	863.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	58433.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32310268-2	chr2	32309768	32310768	+	863.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_125959, intron 20 of 21)	intron (NR_125959, intron 20 of 21)	-7997.0	NR_128563	104795665.0		NR_128563	ENSMUSG00000092765	Gm23363	Mir3154|mir-3154|mmu-mir-3154	predicted gene, 23363	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25460306-2	chr2	25459806	25460806	+	863.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153557, exon 4 of 7)	exon (NM_153557, exon 4 of 7)	788.0	NM_153557	227622.0	Mm.261780	NM_153557	ENSMUSG00000047617	Paxx	D930050G13Rik	non-homologous end joining factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-89299151-1	chr7	89298651	89299651	+	863.0	f0_balb.idr	intron (NM_028343, intron 3 of 14)	intron (NM_028343, intron 3 of 14)	39636.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72205295-2	chr5	72204795	72205795	+	863.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 1 of 22)	intron (NR_003966, intron 1 of 22)	1952.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118621536-2	chr9	118621036	118622036	+	863.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	RMER30|DNA|hAT-Charlie	14827.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160729161-2	chr2	160728661	160729661	+	863.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2149.0	NM_021280	18803.0	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71214755-3	chr17	71214245	71215245	+	863.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164885, intron 1 of 19)	intron (NM_001164885, intron 1 of 19)	10091.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	2.5	16.5	2.5	3.5	5.5	8.0
Merged-chr3-79528145-4	chr3	79527642	79528642	+	863.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	39537.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153711023-2	chr2	153710523	153711523	+	863.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30264.0	NM_007896	13589.0	Mm.143877	NM_007896	ENSMUSG00000027479	Mapre1	5530600P05Rik|AI462499|AI504412|AW260097|BIM1p|D2Ertd459e|Eb1	microtubule-associated protein, RP/EB family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-90551440-2	chr6	90550940	90551940	+	863.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027406, intron 1 of 22)	intron (NM_027406, intron 1 of 22)	647.0	NM_027406	107747.0	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107893738-3	chr13	107893323	107894323	+	863.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3759.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98842461-2	chr11	98841961	98842961	+	863.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080925, intron 3 of 14)	intron (NM_001080925, intron 3 of 14)	5676.0	NM_001080925	268480.0	Mm.340766	NM_001080925	ENSMUSG00000038020	Rapgefl1	B230105J10	Rap guanine nucleotide exchange factor (GEF)-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73524322-2	chr14	73523822	73524822	+	863.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172527, intron 3 of 4)	intron (NM_172527, intron 3 of 4)	927.0	NM_001360484	214254.0	Mm.386852	NM_172527	ENSMUSG00000033405	Nudt15	6530403O17|A730068G11Rik|MTH2	nudix (nucleoside diphosphate linked moiety X)-type motif 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38691490-4	chr15	38690999	38691999	+	863.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025494, intron 12 of 12)	intron (NM_025494, intron 12 of 12)	29595.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-109631373-4	chr7	109630888	109631888	+	862.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14241.0	NM_029811	76954.0	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-130671482-3	chr7	130670987	130671987	+	862.9722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_206856, intron 3 of 20)	intron (NM_206856, intron 3 of 20)	-21069.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121405380-4	chr14	121404884	121405884	+	862.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26154.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-74208334-4	chr18	74207822	74208822	+	862.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164355)	promoter-TSS (NM_001164355)	-504.0	NM_025581	66468.0	Mm.283406	NM_025581	ENSMUSG00000036223	Ska1	2810433K01Rik|AV117428	spindle and kinetochore associated complex subunit 1	protein-coding	15.5	74.0	39.0	40.0	53.5	73.0
Merged-chr10-121630438-5	chr10	121630081	121631081	+	862.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-4249.0	NM_001359618	73192.0	Mm.25042	NM_001081056	ENSMUSG00000034667	Xpot	1110004L07Rik|3110065H13Rik|AI452076|C79645|EXPORTIN-T	exportin, tRNA (nuclear export receptor for tRNAs)	protein-coding	2.0	4.0	7.0	0.0	6.0	9.5
Merged-chr9-62876270-6	chr9	62875693	62876693	+	862.922241	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001102468)	TTS (NM_001102468)	-14169.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135680512-4	chr7	135679996	135680996	+	862.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316681, intron 16 of 17)	intron (NM_001316681, intron 16 of 17)	-28182.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120247620-4	chr10	120247094	120248094	+	862.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20534.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-27177345-4	chr8	27176877	27177877	+	862.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2731.0	NM_001080813	75767.0	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82807586-4	chr15	82807081	82808081	+	862.895874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13336.0	NM_029562	76279.0	Mm.439931	NM_029562	ENSMUSG00000022445	Cyp2d26	1300006E06Rik	cytochrome P450, family 2, subfamily d, polypeptide 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92671614-3	chr16	92671114	92672114	+	862.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 4 of 6)	intron (NM_001111022, intron 4 of 6)	25715.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-24897041-4	chr4	24896526	24897526	+	862.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1057.0	NM_026742	68493.0	Mm.204831	NM_026742	ENSMUSG00000028261	Ndufaf4	1110007M04Rik|3000003G13Rik|AW214064	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25217822-4	chr7	25217313	25218313	+	862.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106015)	promoter-TSS (NR_106015)	-88.0	NR_106015	102466794.0		NR_106015	ENSMUSG00000098325	Mir7048	Gm27274|mmu-mir-7048	microRNA 7048	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7064784-4	chr19	7064288	7065288	+	862.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134147, intron 1 of 10)	intron (NM_134147, intron 1 of 10)	8020.0	NM_134147	107227.0	Mm.439977	NM_134147	ENSMUSG00000036278	Macrod1	AI604841|AW743046|D930010J01Rik|Lrp16	MACRO domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-5208424-3	chr10	5207886	5208886	+	862.849976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347711, intron 86 of 145)	intron (NM_001347711, intron 86 of 145)	-13679.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75598173-2	chr18	75597656	75598656	+	862.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 6 of 11)	intron (NM_201354, intron 6 of 11)	83511.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	3.0	1.0	2.0	7.0	9.5	0.5
Merged-chr9-25561355-4	chr9	25560854	25561854	+	862.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 3 of 7)	intron (NM_026189, intron 3 of 7)	79757.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24515496-3	chr13	24514968	24515968	+	862.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66721.0	NM_001286100	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78139221-3	chr10	78138677	78139677	+	862.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30591.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108918562-4	chr8	108918062	108919062	+	862.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 5 of 9)	intron (NM_007496, intron 5 of 9)	-18298.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64447452-4	chr15	64446953	64447953	+	862.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-64534.0	NM_010026	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.0	0.0	0.5	0.0	0.5	0.0
Merged-chr17-43076030-3	chr17	43075490	43076490	+	862.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 4 of 5)	intron (NM_178589, intron 4 of 5)	59435.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	3.5	14.0	7.0	19.0	24.5	19.5
Merged-chr5-121999790-4	chr5	121999285	122000285	+	862.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007804, intron 2 of 22)	intron (NM_007804, intron 2 of 22)	48040.0	NM_007804	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	0.0	2.5	4.0	0.0	4.0	0.0
Merged-chr17-30197023-3	chr17	30196493	30197493	+	862.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356265, intron 5 of 5)	L1MD3|LINE|L1	191954.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29871582-3	chr11	29871078	29872078	+	862.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 7 of 41)	intron (NM_146016, intron 7 of 41)	-45910.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	7.5	4.0	8.0	13.0	1.0	2.0
Merged-chr3-75298081-3	chr3	75297593	75298593	+	862.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28015.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95014114-2	chr3	95013614	95014614	+	862.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357863, intron 1 of 8)	intron (NM_001357863, intron 1 of 8)	1124.0	NM_030074	78266.0	Mm.389478	NM_030074	ENSMUSG00000019338	Zfp687	4931408L03Rik|Znf687|mKIAA1441	zinc finger protein 687	protein-coding	0.5	0.0	0.0	0.5	0.0	0.0
Merged-chr11-106609516-2	chr11	106609016	106610016	+	862.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_198292, intron 1 of 11)	intron (NM_198292, intron 1 of 11)	3414.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90876279-4	chr5	90875796	90876796	+	862.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14949.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	2.0	1.0	3.0	11.0	1.0	4.0
Merged-chr5-130089365-4	chr5	130088852	130089852	+	862.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130476, intron 1 of 5)	intron (NM_001130476, intron 1 of 5)	9982.0	NM_001130476	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	0.0	0.0	2.0	0.0	0.0	1.5
Merged-chr19-3890404-2	chr19	3889920	3890920	+	862.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271496, intron 9 of 11)	intron (NM_001271496, intron 9 of 11)	14810.0	NM_016921	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	5.5	0.0	0.0	6.0	3.0	0.0
Merged-chr9-37544590-4	chr9	37544068	37545068	+	862.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_020518)	TTS (NM_020518)	5313.0	NM_020518	57276.0	Mm.27478	NM_020518	ENSMUSG00000001943	Vsig2	1190004B15Rik|2210413P10Rik|AU040484|CTX|Ctm	V-set and immunoglobulin domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47829346-2	chr6	47828846	47829846	+	862.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_177882, intron 1 of 3)	PB1D9|SINE|Alu	1159.0	NM_177882	330301.0	Mm.128149	NM_177882	ENSMUSG00000051499	Zfp786	A730012O14Rik|Znf786	zinc finger protein 786	protein-coding	6.0	1.5	5.5	0.0	0.5	0.5
Merged-chr5-77357874-4	chr5	77357387	77358387	+	862.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008048, intron 1 of 4)	intron (NM_008048, intron 1 of 4)	47403.0	NM_153798	231329.0	Mm.273217	NM_153798	ENSMUSG00000029250	Polr2b	Pol2rb|Rpb140|Rpb2	polymerase (RNA) II (DNA directed) polypeptide B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120607076-2	chr1	120606576	120607576	+	862.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_010133, exon 2 of 2)	exon (NM_010133, exon 2 of 2)	4589.0	NM_010133	13798.0	Mm.2657	NM_010133	ENSMUSG00000058665	En1	En-1|Mo-en.1|engrailed-1	engrailed 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97362867-5	chr11	97362393	97363393	+	862.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_138657, exon 1 of 10)	exon (NM_138657, exon 1 of 10)	342.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-41045297-3	chr8	41044804	41045804	+	862.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 5 of 13)	intron (NM_001005863, intron 5 of 13)	-3373.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	5.0	3.5	13.0	16.0	15.5	6.5
Merged-chr14-74797669-3	chr14	74797212	74798212	+	862.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 13 of 19)	intron (NM_001033439, intron 13 of 19)	65415.0	NM_016903	13885.0	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88719031-3	chr4	88718526	88719526	+	862.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172871, exon 1 of 1)	3' UTR (NM_172871, exon 1 of 1)	3482.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12206774-4	chr15	12206338	12207338	+	862.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356498, intron 1 of 15)	intron (NM_001356498, intron 1 of 15)	1810.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100022250-4	chr12	100021752	100022752	+	862.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	ID2|SINE|ID	57753.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32786180-4	chr12	32785654	32786654	+	862.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-34181.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.0	1.0	0.5	0.0	0.0	5.0
Merged-chr2-151967163-4	chr2	151966709	151967709	+	862.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_035478)	TTS (NR_035478)	408.0	NR_035478	100316704.0		NR_035478	ENSMUSG00000088491	Mir1953	mir-1953|mmu-mir-1953	microRNA 1953	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120664732-4	chr8	120664204	120665204	+	862.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010926, intron 1 of 4)	intron (NM_010926, intron 1 of 4)	3408.0	NM_010926	18117.0	Mm.2136	NM_010926	ENSMUSG00000031819	Emc8	Cox4nb|Fam158b|Noc4	ER membrane protein complex subunit 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33875962-4	chr16	33875471	33876471	+	862.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010580, exon 4 of 15)	exon (NM_010580, exon 4 of 15)	46306.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34747013-4	chr19	34746519	34747519	+	862.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172838)	promoter-TSS (NM_172838)	92.0	NM_172838	240638.0	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	1.5	6.0	1.5	3.0	18.5	0.5
Merged-chr14-30125164-4	chr14	30124629	30125629	+	862.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 11 of 46)	intron (NM_001083616, intron 11 of 46)	102496.0	NM_175343	218865.0	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65401758-4	chr5	65401245	65402245	+	862.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024471, intron 7 of 10)	intron (NM_024471, intron 7 of 10)	10248.0	NM_001310612	79464.0	Mm.195776	NM_024471	ENSMUSG00000029199	Lias	2900022L22Rik|4933425M12Rik|7a5ex|C77512|LS|lip-syn	lipoic acid synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27317732-3	chr3	27317248	27318248	+	862.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009425, intron 1 of 4)	GA-rich|Low_complexity|Low_complexity	671.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105711641-3	chr5	105711164	105712164	+	862.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	10854.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	12.5	24.0	7.5	4.0	19.0	7.0
Merged-chr1-163383786-1	chr1	163383286	163384286	+	862.6666869999999	f0_balb.idr	Intergenic	Intergenic	19883.0	NR_132627	98376.0	Mm.32901	NM_178883	ENSMUSG00000040124	Gorab	NTKL-BP1|SCYL1-BP1|Scyl1bp1	golgin, RAB6-interacting	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122297537-2	chr6	122297037	122298037	+	862.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11183.0	NM_010749	17113.0	Mm.249225	NM_010749	ENSMUSG00000007458	M6pr	CD-MPR|Mpr46	mannose-6-phosphate receptor, cation dependent	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101416648-2	chr7	101416148	101417148	+	862.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5043.0	NM_001008548	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35570992-3	chr8	35570515	35571515	+	862.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BC1_Mm|scRNA|scRNA	-16783.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	13.0	0.5	0.0	3.0	3.5	4.0
Merged-chr9-21032225-3	chr9	21031770	21032770	+	862.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035438)	promoter-TSS (NR_035438)	58.0	NR_035438	100316681.0		NR_035438	ENSMUSG00000084663	Mir1900	Mirn1900|mmu-mir-1900	microRNA 1900	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132065766-3	chr4	132065251	132066251	+	862.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	6346.0	NM_183428	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143044696-2	chr7	143044196	143045196	+	862.6666869999999	f0_balb.idr|f1_balb.idr	intron (NR_110355, intron 1 of 4)	MT2A|LTR|ERVL	-8054.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	33.0	60.0	46.0	4.5	87.0	55.0
Merged-chr5-30652390-3	chr5	30651893	30652893	+	862.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175675, intron 1 of 5)	RMER17C|LTR|ERVK	4454.0	NM_175675	74919.0	Mm.247985	NM_175675	ENSMUSG00000029175	Slc35f6	4930471M23Rik|5730478O19Rik|ANT2BP|P40|Tango9	solute carrier family 35, member F6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-22866061-3	chr2	22865553	22866553	+	862.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 10 of 13)	intron (NM_019456, intron 10 of 13)	-29469.0	NM_019501	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55933899-3	chr16	55933421	55934421	+	862.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159366, intron 1 of 4)	CpG	927.0	NM_001159364	74201.0	Mm.178427	NM_028815	ENSMUSG00000022604	Cep97	2810403B08Rik|4932439K18Rik|AA437768|E130116N02Rik|Lrriq2	centrosomal protein 97	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89385244-3	chr3	89384742	89385742	+	862.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009565, intron 1 of 2)	intron (NM_009565, intron 1 of 2)	2429.0	NM_001355212	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60749997-2	chr13	60749497	60750497	+	862.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 21 of 26)	intron (NM_134062, intron 21 of 26)	36367.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-179488171-4	chr1	179487681	179488681	+	862.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027188, intron 1 of 11)	intron (NM_027188, intron 1 of 11)	29860.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6080956-4	chr15	6080455	6081455	+	862.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36251.0	NR_155429	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141662506-2	chr4	141662006	141663006	+	862.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	1609.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	64.5	163.5	144.0	108.5	144.5	106.5
Merged-chr5-31192420-2	chr5	31191959	31192959	+	862.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153680)	promoter-TSS (NM_153680)	680.0	NM_001127355	13667.0	Mm.29394	NM_010122	ENSMUSG00000029145	Eif2b4	Eif2b	eukaryotic translation initiation factor 2B, subunit 4 delta	protein-coding	3.0	14.5	5.5	0.0	36.5	10.0
Merged-chr11-115159643-2	chr11	115159143	115160143	+	862.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_021411, intron 5 of 8)	intron (NM_021411, intron 5 of 8)	-3698.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21648119-2	chr16	21647619	21648619	+	862.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001001881)	TTS (NM_001001881)	46546.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136137780-4	chr1	136137305	136138305	+	862.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	6415.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32441396-3	chr18	32440885	32441885	+	862.6333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63101.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-23172486-4	chr2	23171980	23172980	+	862.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013771, intron 5 of 18)	ID_B1|SINE|B4	15975.0	NM_013771	27377.0	Mm.23335	NM_013771	ENSMUSG00000026775	Yme1l1	FtsH1|Ftsh	YME1-like 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-103348722-4	chr12	103348224	103349224	+	862.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 1 of 9)	intron (NM_023049, intron 1 of 9)	7277.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101654778-4	chr4	101654218	101655218	+	862.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175036, intron 2 of 3)	intron (NM_175036, intron 2 of 3)	6935.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	50.5	130.0	90.0	67.0	114.5	91.5
Merged-chr6-51580495-4	chr6	51580001	51581001	+	862.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361577, intron 5 of 6)	intron (NM_001361577, intron 5 of 6)	35208.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.0	0.0	7.0	0.0	4.0	0.5
Merged-chr3-98015989-4	chr3	98015485	98016485	+	862.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	2447.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-6241034-3	chr7	6240540	6241540	+	862.6166380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11670.0	NM_001177416	627821.0	Mm.99441	NM_001177416	ENSMUSG00000053367	Epp13	EG627821|Eddm13|Gm6792	epididymal protein 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-104206358-3	chr7	104205851	104206851	+	862.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12444.0	NM_001013616	94088.0	Mm.274843	NM_001013616	ENSMUSG00000072244	Trim6	C430046K18Rik|D7Ertd684e	tripartite motif-containing 6	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr4-97767080-5	chr4	97766569	97767569	+	862.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-10557.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.0	2.0	2.5	4.0	1.5	0.5
Merged-chr9-102522513-3	chr9	102522025	102523025	+	862.577759	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024291, intron 4 of 10)	intron (NM_024291, intron 4 of 10)	16387.0	NM_024291	16716.0	Mm.101692	NM_024291	ENSMUSG00000035606	Ky	CD1|D9Mgc44e|ky	kyphoscoliosis peptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-45923191-5	chr5	45922676	45923676	+	862.56665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9233.0	NR_110478	78106.0	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA	41.5	57.0	45.0	15.0	15.0	16.0
Merged-chr18-35467851-4	chr18	35467413	35468413	+	862.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001360814, exon 1 of 10)	5' UTR (NM_001360814, exon 1 of 10)	2039.0	NM_001360814	81500.0	Mm.291482	NM_030749	ENSMUSG00000024357	Sil1	1810057E01Rik|AI042831|wz	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-82459204-3	chr8	82458713	82459713	+	862.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56627.0	NM_008357	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	1.0	0.0	0.0	0.0	1.0	0.0
Merged-chr15-9120132-6	chr15	9119577	9120577	+	862.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 7 of 9)	intron (NM_013787, intron 7 of 9)	20377.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84642144-3	chr8	84641649	84642649	+	862.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	20703.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr7-141560561-3	chr7	141560033	141561033	+	862.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1647.0	NM_001357068	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55509984-4	chr16	55509469	55510469	+	862.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	15238.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111878387-4	chr12	111877888	111878888	+	862.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011625, intron 1 of 16)	intron (NM_011625, intron 1 of 16)	29667.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115469458-4	chr6	115468957	115469957	+	862.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 6 of 7)	intron (NM_001308354, intron 6 of 7)	47391.0	NM_011146	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32324029-9	chr16	32323582	32324582	+	862.5277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8170.0	NM_177633	224111.0	Mm.31275	NM_177633	ENSMUSG00000053774	Ubxn7	A630090P18|AI196514|Ubxd7|mKIAA0794	UBX domain protein 7	protein-coding	1.0	3.0	2.5	9.5	8.0	0.0
Merged-chr13-23583261-9	chr13	23582834	23583834	+	862.5031130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178194)	TTS (NM_178194)	1732.0	NM_175654	319156.0	Mm.260530	NM_175654	ENSMUSG00000061482	Hist1h4d	-	histone cluster 1, H4d	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32246176-2	chr16	32245676	32246676	+	862.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173439, intron 1 of 2)	intron (NM_173439, intron 1 of 2)	849.0	NM_173439	268882.0	Mm.256137	NM_173439	ENSMUSG00000035764	Fbxo45	2610017J04Rik|AI463119|BC026799	F-box protein 45	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60831529-2	chr11	60831029	60832029	+	862.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172112, intron 1 of 6)	intron (NM_001172112, intron 1 of 6)	898.0	NM_145428	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30045008-2	chr2	30044508	30045508	+	862.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008498, intron 1 of 8)	B1_Mur4|SINE|Alu	3871.0	NM_001008498	71820.0	Mm.88053	NM_001008498	ENSMUSG00000039715	Wdr34	3200002I06Rik	WD repeat domain 34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5682176-4	chr2	5681660	5682660	+	862.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	MER21C|LTR|ERVL	-6114.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	3.5	1.0	4.5	7.5	5.5	1.5
Merged-chr3-96269120-4	chr3	96268642	96269642	+	862.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175666)	promoter-TSS (NM_175666)	488.0	NM_178215	319154.0	Mm.383293	NM_178215	ENSMUSG00000074403	Hist2h3b	H3-615|H3-616	histone cluster 2, H3b	protein-coding	28.5	100.0	75.0	32.5	128.5	83.0
Merged-chr15-30468439-2	chr15	30467942	30468942	+	862.5	f0_balb.idr|f0_c57.idr	intron (NM_001355502, intron 2 of 21)	intron (NM_001355502, intron 2 of 21)	295849.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-33276505-3	chr14	33276026	33277026	+	862.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 3 of 10)	B4A|SINE|B4	59703.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9736741-2	chr4	9736241	9737241	+	862.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-33844.0	NR_030693	320152.0	Mm.159946	NR_030693		4930412C18Rik	5730591J02Rik	RIKEN cDNA 4930412C18 gene	ncRNA	0.0	8.0	0.5	0.0	0.0	0.5
Merged-chr10-96613905-2	chr10	96613405	96614405	+	862.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-3096.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180363217-2	chr1	180362717	180363717	+	862.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-32668.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168011896-2	chr2	168011396	168012396	+	862.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1303.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107547795-6	chr11	107547336	107548336	+	862.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198298)	promoter-TSS (NM_198298)	-124.0	NM_198298	78455.0	Mm.272047	NM_198298	ENSMUSG00000020721	Helz	3110078M01Rik|9430093I07Rik|9630002H22Rik|AI851979|DRHC	helicase with zinc finger domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-50229390-2	chr18	50228890	50229890	+	862.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48979.0	NM_001004061	225497.0	Mm.329435	NM_001004061	ENSMUSG00000035420	Fam170a	Gm93|Znfd	family with sequence similarity 170, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79339262-3	chr2	79338765	79339765	+	862.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001048176, intron 10 of 12)	intron (NM_001048176, intron 10 of 12)	83839.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83668562-2	chr8	83668062	83669062	+	862.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013641, exon 2 of 3)	exon (NM_013641, exon 2 of 3)	1918.0	NM_013641	19216.0	Mm.213000	NM_013641	ENSMUSG00000019464	Ptger1	EP1|Ptgerep1	prostaglandin E receptor 1 (subtype EP1)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110774495-2	chr5	110773995	110774995	+	862.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359219, intron 5 of 5)	intron (NM_001359219, intron 5 of 5)	3546.0	NR_152254	100504049.0	Mm.474515	NR_152254	ENSMUSG00000086401	Gm15559	-	predicted gene 15559	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114930464-2	chr11	114929964	114930964	+	862.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199221, intron 1 of 3)	RSINE1|SINE|B4	3922.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62498017-2	chr4	62497517	62498517	+	862.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_138653)	TTS (NM_138653)	4183.0	NM_024257	72748.0	Mm.41506	NM_024257	ENSMUSG00000038422	Hdhd3	2810435D12Rik	haloacid dehalogenase-like hydrolase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80328369-2	chr10	80327869	80328869	+	862.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008793, intron 2 of 14)	ORR1D1|LTR|ERVL-MaLR	1104.0	NM_008793	18551.0	Mm.299916	NM_008793	ENSMUSG00000020131	Pcsk4	AI647044|L21221|NEC 3|NEC3|PC4|SPC5	proprotein convertase subtilisin/kexin type 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166451267-2	chr2	166450767	166451767	+	862.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_015558, intron 1 of 2)	intron (NR_015558, intron 1 of 2)	3816.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-83985076-2	chr3	83984576	83985576	+	862.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172681, intron 3 of 34)	intron (NM_172681, intron 3 of 34)	55085.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-85231981-2	chr5	85231400	85232400	+	862.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-814518.0	NM_007937	13839.0	Mm.137991	NM_007937	ENSMUSG00000029245	Epha5	AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk	Eph receptor A5	protein-coding	4.0	3.5	1.5	0.0	0.5	0.0
Merged-chr15-73634935-2	chr15	73634435	73635435	+	862.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10191.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-58354193-3	chr19	58353688	58354688	+	862.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285457, intron 4 of 9)	intron (NM_001285457, intron 4 of 9)	57984.0	NR_040449	791347.0	Mm.452208	NR_040449		Gm10007	-	predicted gene 10007	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-83443183-2	chr9	83442683	83443683	+	862.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_102437, intron 1 of 2)	intron (NR_102437, intron 1 of 2)	-2056.0	NM_029434	75782.0	Mm.199698	NM_027448	ENSMUSG00000032258	Lca5	4930431B11Rik|5730406O13Rik|AV274874|ORF64	Leber congenital amaurosis 5 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25281477-2	chr10	25280977	25281977	+	862.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 3 of 7)	intron (NM_018747, intron 3 of 7)	17686.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158865492-2	chr2	158864992	158865992	+	862.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70685.0	NM_001291144	71715.0	Mm.315652	NM_145742	ENSMUSG00000027655	Dhx35	1200009D07Rik|Ddx35	DEAH (Asp-Glu-Ala-His) box polypeptide 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121808922-2	chr11	121808422	121809422	+	862.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21296.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-81330752-4	chr16	81330252	81331252	+	862.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113208, intron 1 of 17)	intron (NM_001113208, intron 1 of 17)	130055.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-37618261-4	chr17	37617763	37618763	+	862.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	6370.0	NM_146632	258625.0	Mm.377599	NM_146632	ENSMUSG00000061336	Olfr116	MOR218-2	olfactory receptor 116	protein-coding	0.0	3.5	0.5	1.5	0.0	1.0
Merged-chr10-60333835-4	chr10	60333359	60334359	+	862.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 40 of 68)	intron (NM_001252635, intron 40 of 68)	-12992.0	NM_001159572	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88198673-4	chr6	88198159	88199159	+	862.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008090)	promoter-TSS (NM_008090)	-5.0	NM_008090	14461.0	Mm.491156	NM_008090	ENSMUSG00000015053	Gata2	Gata-2	GATA binding protein 2	protein-coding	1.0	5.5	0.5	1.0	2.0	0.5
Merged-chr3-95494525-3	chr3	95494010	95495010	+	862.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009709, exon 20 of 21)	exon (NM_009709, exon 20 of 21)	-4700.0	NM_007802	13038.0	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-127225863-3	chr1	127225363	127226363	+	862.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	20877.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	29.5	54.5	45.0	8.0	23.0	23.5
Merged-chr2-77288296-3	chr2	77287800	77288800	+	862.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7708.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106158309-3	chr11	106157809	106158809	+	862.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001356459, exon 5 of 5)	3' UTR (NM_001356459, exon 5 of 5)	1618.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45873352-5	chr7	45872879	45873879	+	862.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133950, intron 1 of 4)	intron (NM_133950, intron 1 of 4)	539.0	NM_133950	68137.0	Mm.298433	NM_133950	ENSMUSG00000002778	Kdelr1	8030486F04Rik|AW215843|Erd2.1	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1	protein-coding	12.0	18.0	16.5	11.0	37.0	29.5
Merged-chr4-134005131-4	chr4	134004630	134005630	+	862.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145833, exon 4 of 4)	3' UTR (NM_145833, exon 4 of 4)	-4266.0	NM_026144	67422.0	Mm.100290	NM_026144	ENSMUSG00000012117	Dhdds	3222401G21Rik|CIT|DS|HDS|W91638	dehydrodolichyl diphosphate synthase	protein-coding	5.5	7.0	10.5	6.5	9.0	2.0
Merged-chr12-34547265-4	chr12	34546760	34547760	+	862.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	L1M5|LINE|L1	-18371.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	1.5	4.5	2.0	3.5	6.5	5.0
Merged-chr2-166683130-4	chr2	166682638	166683638	+	862.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	30694.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120579873-3	chr11	120579372	120580372	+	862.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133796, intron 3 of 5)	intron (NM_133796, intron 3 of 5)	1748.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98134734-2	chr15	98134234	98135234	+	862.416626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001170710)	TTS (NM_001170710)	10968.0	NM_030121	78541.0	Mm.200766	NM_030121	ENSMUSG00000048175	Asb8	4930539L19Rik|AI788835|C430011H06Rik	ankyrin repeat and SOCS box-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9555237-2	chr18	9554737	9555737	+	862.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64232.0	NM_007593	26369.0	Mm.195831	NM_007593	ENSMUSG00000050996	Cetn1	caltractin	centrin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-4391970-4	chr10	4391443	4392443	+	862.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3835.0	NM_001033466	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89183125-3	chr3	89182626	89183626	+	862.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001014995)	promoter-TSS (NM_001014995)	-17.0	NM_001355760	68521.0	Mm.274708	NM_001014995	ENSMUSG00000032657	Fam189b	1110013L07Rik	family with sequence similarity 189, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148527988-4	chr2	148527538	148528538	+	862.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84503.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-109278838-4	chr2	109278329	109279329	+	862.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029790)	promoter-TSS (NM_029790)	-539.0	NM_029790	76894.0	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26514017-2	chr17	26513518	26514518	+	862.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5546.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	11.0	12.5	1.0	10.5	12.0	2.0
Merged-chr3-90472424-4	chr3	90471923	90472923	+	862.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-3778.0	NM_026374	67781.0	Mm.227258	NM_026374	ENSMUSG00000001016	Ilf2	6230405A16Rik|TEG-267|Tex261|Tex267	interleukin enhancer binding factor 2	protein-coding	0.0	1.0	0.0	0.0	1.0	0.0
Merged-chr6-86659145-4	chr6	86658641	86659641	+	862.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010751, intron 3 of 5)	intron (NM_010751, intron 3 of 5)	10018.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117139409-4	chr4	117138906	117139906	+	862.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-5443.0	NM_001313916	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	4.0	10.5	3.0	4.0	3.0	10.5
Merged-chr5-123016116-2	chr5	123015616	123016616	+	862.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_175423, intron 1 of 1)	intron (NM_175423, intron 1 of 1)	1042.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73350513-4	chr15	73350010	73351010	+	862.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358046, intron 2 of 34)	intron (NM_001358046, intron 2 of 34)	72681.0	NM_007982	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-35813352-2	chr1	35812852	35813852	+	862.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS_Mm|LTR|ERV1	-255048.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-103751616-2	chr13	103751116	103752116	+	862.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361085, intron 9 of 11)	intron (NM_001361085, intron 9 of 11)	12966.0	NM_172592	218543.0	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122863963-3	chr6	122863430	122864430	+	862.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7773.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-44979642-3	chr2	44979140	44980140	+	862.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43537.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35025176-4	chr17	35024589	35025589	+	862.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023893)	TTS (NM_023893)	2927.0	NR_028258	78376.0	Mm.390966	NM_023893	ENSMUSG00000036185	Sapcd1	2810436B06Rik|G7d|Ng23	suppressor APC domain containing 1	protein-coding	0.0	0.0	4.0	0.0	0.0	1.5
Merged-chr5-64291076-3	chr5	64290581	64291581	+	862.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 11 of 18)	L1MB8|LINE|L1	60724.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137511385-2	chr5	137510885	137511885	+	862.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCTG)n|Simple_repeat|Simple_repeat	-7495.0	NM_031408	57330.0	Mm.268344	NM_031408	ENSMUSG00000029714	Gigyf1	Perq1|mKIAA4110	GRB10 interacting GYF protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79882134-4	chr10	79881658	79882658	+	862.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011178, exon 4 of 5)	exon (NM_011178, exon 4 of 5)	2491.0	NM_011178	19152.0	Mm.2364	NM_011178	ENSMUSG00000057729	Prtn3	PR3|mPR3	proteinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-89680758-3	chr10	89680245	89681245	+	862.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198021, intron 1 of 17)	intron (NM_198021, intron 1 of 17)	5549.0	NM_001358843	213326.0	Mm.27651	NM_198021	ENSMUSG00000069539	Scyl2	AU015688|AW536445|BC030932|CVAK104|D10Ertd802e	SCY1-like 2 (S. cerevisiae)	protein-coding	1.0	1.5	6.0	0.0	1.5	0.0
Merged-chr11-98923299-3	chr11	98922797	98923797	+	862.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011799, exon 12 of 12)	3' UTR (NM_011799, exon 12 of 12)	-14399.0	NM_009024	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-14015162-3	chr14	14014663	14015663	+	862.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139227, intron 3 of 11)	intron (NM_139227, intron 3 of 11)	2672.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-28197900-3	chr2	28197447	28198447	+	862.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038613, intron 1 of 5)	intron (NM_001038613, intron 1 of 5)	4854.0	NM_001038614	56177.0	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6489226-3	chr19	6488735	6489735	+	862.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 12 of 22)	intron (NM_001205234, intron 12 of 22)	53835.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144138804-3	chr3	144138298	144139298	+	862.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20B|DNA|hAT-Charlie	63534.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133207027-4	chr4	133206497	133207497	+	862.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	5539.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	16.0	20.0	22.5	11.0	38.5	29.5
Merged-chr9-41051708-4	chr9	41051196	41052196	+	862.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	27810.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	21.0	30.5	26.5	4.5	5.0	11.0
Merged-chr7-45816237-2	chr7	45815737	45816737	+	862.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145963)	TTS (NM_145963)	-1921.0	NM_001112701	19158.0	Mm.272130	NM_011181	ENSMUSG00000003269	Cyth2	ARNO|CLM2|Pscd2	cytohesin 2	protein-coding	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69094359-4	chr8	69093894	69094894	+	862.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007509, intron 1 of 13)	intron (NM_007509, intron 1 of 13)	-5172.0	NM_153054	110877.0	Mm.19301	NM_153054	ENSMUSG00000036330	Slc18a1	4832416I10Rik|Vat1|Vmat1	solute carrier family 18 (vesicular monoamine), member 1	protein-coding	17.0	34.0	29.5	14.5	29.0	27.0
Merged-chr9-20545552-2	chr9	20545052	20546052	+	862.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24133.0	NM_001082485	77519.0	Mm.431849	NM_001082485	ENSMUSG00000060510	Zfp266	5330440G10Rik|5730601F06Rik|AW552317	zinc finger protein 266	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21166942-4	chr9	21166451	21167451	+	862.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183408, intron 1 of 14)	intron (NM_183408, intron 1 of 14)	1237.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164877500-2	chr2	164876896	164877896	+	862.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1972.0	NM_146129	228866.0	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	3.0	6.0	8.0	6.5	3.5	6.0
Merged-chr7-19328019-4	chr7	19327525	19328525	+	862.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17046.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163787893-4	chr2	163787397	163788397	+	862.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32937.0	NM_016873	22403.0	Mm.13828	NM_016873	ENSMUSG00000027656	Wisp2	Ccn5|Crgr4|Ctgfl|Rcop1	WNT1 inducible signaling pathway protein 2	protein-coding	0.0	7.0	0.5	0.0	0.0	0.0
Merged-chr4-3767078-4	chr4	3766571	3767571	+	862.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	52107.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	10.0	5.0	10.0	0.0	19.5	4.0
Merged-chr3-105802702-4	chr3	105802189	105803189	+	862.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1308.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-129756532-6	chr7	129756040	129757040	+	862.236084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	164677.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-28638944-3	chr12	28638435	28639435	+	862.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-2982.0	NM_011300	20115.0	Mm.279839	NM_011300	ENSMUSG00000061477	Rps7	Mtu|Rps7A|S7	ribosomal protein S7	protein-coding	2.0	0.5	0.0	0.0	0.0	0.0
Merged-chr18-36792366-3	chr18	36791858	36792858	+	862.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001305627, exon 12 of 12)	3' UTR (NM_001305627, exon 12 of 12)	-1565.0	NM_025594	66492.0	Mm.251155	NM_025594	ENSMUSG00000001383	Zmat2	2610510D14Rik|2900082I05Rik	zinc finger, matrin type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-9675490-6	chr10	9675098	9676098	+	862.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177271)	promoter-TSS (NM_177271)	-390.0	NM_177271	320825.0	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-140783115-4	chr2	140782626	140783626	+	862.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 3 of 18)	MLT1H|LTR|ERVL-MaLR	-111650.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91924229-4	chr2	91923717	91924717	+	862.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007699, intron 1 of 1)	intron (NM_007699, intron 1 of 1)	2028.0	NM_007699	12672.0	Mm.330405	NM_007699	ENSMUSG00000040495	Chrm4	Chrm-4|M4	cholinergic receptor, muscarinic 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124536920-4	chr5	124536392	124537392	+	862.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3899.0	NM_019770	56334.0	Mm.325307	NM_019770	ENSMUSG00000029390	Tmed2	1110032D12Rik|1810020N21Rik|Rnp24|Sid394|p24beta1	transmembrane p24 trafficking protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124444791-4	chr5	124444283	124445283	+	862.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310723)	promoter-TSS (NM_001310723)	-716.0	NM_001310723	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-13070582-4	chr6	13070070	13071070	+	862.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027992, intron 2 of 8)	intron (NM_027992, intron 2 of 8)	811.0	NM_027992	71900.0	Mm.27742	NM_027992	ENSMUSG00000029571	Tmem106b	2310036D22Rik|5830455K21Rik|6430519M21Rik|AI428776|AI661344	transmembrane protein 106B	protein-coding	0.0	5.0	4.0	0.0	3.0	0.0
Merged-chr11-67537562-4	chr11	67537055	67538055	+	862.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008088, intron 1 of 13)	intron (NM_008088, intron 1 of 13)	4557.0	NM_008088	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr16-36936981-2	chr16	36936481	36937481	+	862.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_008225, intron 1 of 13)	intron (NM_008225, intron 1 of 13)	1998.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81760557-3	chr13	81760069	81761069	+	862.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22678.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102914338-3	chr2	102913879	102914879	+	862.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12714.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.0	10.0	0.0	0.0	2.5	10.5
Merged-chr2-91649543-2	chr2	91649043	91650043	+	862.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027371)	promoter-TSS (NR_027371)	248.0	NM_001347175	381410.0	Mm.330401	NM_001033451	ENSMUSG00000075040	Zfp408	Gm1011	zinc finger protein 408	protein-coding	26.5	15.0	17.5	25.5	15.0	19.0
Merged-chr2-44924962-2	chr2	44924462	44925462	+	862.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-63340.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3767274-2	chr19	3766774	3767774	+	862.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167886)	promoter-TSS (NM_001167886)	-147.0	NM_001167889	225888.0	Mm.278578	NM_144871	ENSMUSG00000045098	Kmt5b	AA117471|C630029K18Rik|Suv4-20h1|Suv420h1	lysine methyltransferase 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12009241-2	chr19	12008741	12009741	+	862.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27499.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	1.0	13.0	5.0	10.0	5.5	6.5
Merged-chr11-87853800-2	chr11	87853300	87854300	+	862.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001039684, exon 2 of 18)	exon (NM_001039684, exon 2 of 18)	575.0	NM_001039684	380718.0	Mm.24404	NM_001039684	ENSMUSG00000034121	Mks1	AK190930|B8d3|avc6	Meckel syndrome, type 1	protein-coding	5.0	5.0	13.0	7.5	24.0	15.0
Merged-chr11-101449963-2	chr11	101449463	101450463	+	862.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_027320, intron 1 of 6)	B2_Mm1t|SINE|B2	1551.0	NM_027320	70110.0	Mm.45558	NM_027320	ENSMUSG00000010358	Ifi35	2010008K16Rik|AW986054|IFP35|ifi-35	interferon-induced protein 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-33405698-2	chr6	33405198	33406198	+	862.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347089, intron 7 of 9)	intron (NM_001347089, intron 7 of 9)	156570.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-55017760-4	chr6	55017175	55018175	+	862.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20326.0	NM_180678	353172.0	Mm.250004	NM_180678	ENSMUSG00000029777	Gars	GENA202|Gena201|Nmf249|Sgrp23	glycyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167687704-6	chr2	167687176	167688176	+	862.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-1239.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-93729073-4	chr14	93728561	93729561	+	862.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081377, intron 2 of 4)	intron (NM_001081377, intron 2 of 4)	161608.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	2.0	0.0	1.0	2.5	0.0	4.5
Merged-chr10-116513464-4	chr10	116513001	116514001	+	862.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037848, intron 4 of 4)	intron (NM_001037848, intron 4 of 4)	14448.0	NM_001359253	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109147716-3	chr4	109147195	109148195	+	862.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346502, intron 3 of 23)	intron (NM_001346502, intron 3 of 23)	-9782.0	NM_001355190	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0.0	3.5	3.5	0.0	3.5	3.5
Merged-chr1-43321057-3	chr1	43320518	43321518	+	862.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124257.0	NM_001289533	14200.0	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73487764-3	chr15	73487265	73488265	+	862.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24795.0	NR_152151	105841.0	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155163450-3	chr4	155162954	155163954	+	862.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	59081.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-15739324-4	chr6	15738843	15739843	+	862.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 2 of 4)	ORR1E|LTR|ERVL-MaLR	18682.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126757126-3	chr8	126756628	126757628	+	862.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91892.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-36551924-4	chr3	36551418	36552418	+	862.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019393)	promoter-TSS (NM_019393)	-688.0	NM_019393	50911.0	Mm.116711	NM_019393	ENSMUSG00000027714	Exosc9	PM/Scl-75|Pmscl1|RRP45|p5|p6	exosome component 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51652916-4	chr3	51652397	51653397	+	862.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8282.0	NM_174995	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33830167-4	chr16	33829695	33830695	+	862.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 1 of 14)	CpG	530.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-35376635-3	chr15	35376116	35377116	+	862.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177151, intron 2 of 61)	URR1A|DNA|hAT-Charlie	5070.0	NM_177151	666173.0	Mm.309250	NM_177151	ENSMUSG00000037646	Vps13b	1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|mKIAA0532|mKIAA5032	vacuolar protein sorting 13B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137025360-3	chr5	137024855	137025855	+	862.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4940.0	NM_001039385	381677.0	Mm.389697	NM_001039385	ENSMUSG00000037428	Vgf	Gm1052	VGF nerve growth factor inducible	protein-coding	0.0	0.0	1.0	0.5	0.0	0.0
Merged-chr4-139579634-3	chr4	139579133	139580133	+	862.055542	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	4913.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	39.5	113.0	73.0	5.0	12.5	18.5
Merged-chr6-99096244-4	chr6	99095757	99096757	+	862.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053202, intron 4 of 18)	intron (NM_053202, intron 4 of 18)	-67959.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-11862946-4	chr18	11862470	11863470	+	862.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022021, intron 1 of 8)	intron (NM_022021, intron 1 of 8)	-22532.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	1.5	18.5	22.0	1.5	19.0	17.5
Merged-chr9-44479821-4	chr9	44479326	44480326	+	862.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2999.0	NM_001357490	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32163025-1	chr4	32162525	32163525	+	862.0	f0_balb.idr	Intergenic	Intergenic	198918.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	8.0	39.0	7.5	5.5	18.5	12.0
Merged-chr1-36259464-2	chr1	36258964	36259964	+	862.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13961.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92410821-2	chr16	92410321	92411321	+	862.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	B1F|SINE|Alu	-10743.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-15357108-2	chr9	15356608	15357608	+	862.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176976, intron 1 of 26)	intron (NM_176976, intron 1 of 26)	680.0	NM_176976	319675.0	Mm.218317	NM_176976	ENSMUSG00000046111	Cep295	5830418K08Rik|5832426L23Rik|Gm1131|Kiaa1731	centrosomal protein 295	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81296230-2	chr10	81295730	81296730	+	862.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	3267.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40756598-4	chr9	40756115	40757115	+	862.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	-44658.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	6.5	6.0	8.5	4.0	15.0	4.5
Merged-chr1-136559528-2	chr1	136559028	136560028	+	862.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65373.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-42860192-2	chr9	42859692	42860692	+	862.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175481, intron 1 of 20)	intron (NM_175481, intron 1 of 20)	84179.0	NM_175481	110637.0	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-50895348-1	chr10	50894848	50895848	+	862.0	f0_balb.idr	promoter-TSS (NM_011376)	promoter-TSS (NM_011376)	-303.0	NM_011376	20464.0	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded family bHLH transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133545488-1	chr4	133544988	133545988	+	862.0	f0_balb.idr	intron (NM_010948, intron 1 of 7)	intron (NM_010948, intron 1 of 7)	539.0	NM_010948	18221.0	Mm.69	NM_010948	ENSMUSG00000028851	Nudc	SIG-92|Silg92	nudC nuclear distribution protein	protein-coding	18.5	16.0	13.5	2.5	24.0	16.0
Merged-chr11-96976138-2	chr11	96975638	96976638	+	862.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030220, intron 1 of 6)	intron (NM_030220, intron 1 of 6)	1550.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123018966-3	chr5	123018441	123019441	+	862.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175423, intron 1 of 1)	intron (NM_175423, intron 1 of 1)	3867.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-19697195-4	chr4	19696694	19697694	+	862.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_074090, intron 1 of 24)	intron (NR_074090, intron 1 of 24)	11810.0	NM_177327	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46372183-2	chr4	46371683	46372683	+	862.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17240.0	NM_029086	74753.0	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9649035-2	chr4	9648536	9649536	+	862.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	-5319.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	9.0	24.5	37.5	37.5	64.5	59.5
Merged-chr17-56005539-2	chr17	56005039	56006039	+	862.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102313)	promoter-TSS (NR_102313)	67.0	NR_102313	106766.0	Mm.204991	NM_145934	ENSMUSG00000038781	Stap2	AW049765|STAP-2	signal transducing adaptor family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-82798067-2	chr6	82797567	82798567	+	862.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23613.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56507723-2	chr18	56507223	56508223	+	862.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-30416.0	NR_106160	102465790.0		NR_106160	ENSMUSG00000099196	Mir1258	Gm27371|mmu-mir-1258	microRNA 1258	ncRNA	0.0	0.5	0.0	4.0	6.5	3.5
Merged-chr9-124439363-2	chr9	124438863	124439863	+	862.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	15576.0	NR_015516	75135.0	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46371245-2	chr4	46370745	46371745	+	862.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18178.0	NM_029086	74753.0	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44971307-2	chr7	44970807	44971807	+	862.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001252470, exon 4 of 19)	exon (NM_001252470, exon 4 of 19)	3544.0	NM_001357670	78070.0	Mm.231465	NM_153679	ENSMUSG00000007783	Cpt1c	6530437J22Rik|9630004I06Rik|CPT I-C|CPT IC|CPT1-B|CPTI-B	carnitine palmitoyltransferase 1c	protein-coding	0.0	1.0	0.0	3.0	0.0	2.5
Merged-chr7-99450919-4	chr7	99450413	99451413	+	862.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201352, intron 10 of 17)	intron (NM_201352, intron 10 of 17)	-15091.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	0.0	0.5	0.0	0.0	0.5	0.0
Merged-chr7-15912342-4	chr7	15911852	15912852	+	862.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10019.0	NM_009156	20364.0	Mm.42829	NM_009156	ENSMUSG00000041571	Selenow	Sepw1|selW	selenoprotein W	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-36237864-2	chr2	36237364	36238364	+	862.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 4 of 10)	intron (NM_008969, intron 4 of 10)	7438.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-119341591-1	chr6	119341091	119342091	+	862.0	f0_balb.idr	intron (NM_001362214, intron 4 of 11)	MLT1J|LTR|ERVL-MaLR	-10825.0	NM_172492	211187.0	Mm.121498	NM_172492	ENSMUSG00000055003	Lrtm2	A230084J22|AI841794	leucine-rich repeats and transmembrane domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3163141-3	chr11	3162668	3163668	+	862.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 9 of 32)	intron (NM_030207, intron 9 of 32)	30295.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80184854-1	chr11	80184354	80185354	+	862.0	f1_c57bl6.idr	intron (NM_028019, intron 1 of 4)	L1MB4|LINE|L1	982.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	49.0	131.0	84.5	81.5	211.5	127.5
Merged-chr15-27678737-2	chr15	27678237	27679237	+	862.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	2805.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53112470-5	chr4	53111949	53112949	+	862.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	47446.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-79176417-2	chr17	79175917	79176917	+	862.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	124511.0	NM_001316729	70536.0	Mm.293870	NM_027455	ENSMUSG00000024084	Qpct	5730422A13Rik	glutaminyl-peptide cyclotransferase (glutaminyl cyclase)	protein-coding	0.5	8.5	3.5	1.0	0.5	2.5
Merged-chr10-117841124-3	chr10	117840629	117841629	+	862.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	4845.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-194999614-3	chr1	194999115	195000115	+	862.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17784.0	NR_015566	320977.0	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34897699-2	chr17	34897199	34898199	+	862.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_147151)	promoter-TSS (NM_147151)	-793.0	NM_001286575	110147.0	Mm.35345	NM_145830	ENSMUSG00000013787	Ehmt2	Bat8|D17Ertd710e|G9a|KMT1C|NG36	euchromatic histone lysine N-methyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124727374-2	chr6	124726874	124727874	+	862.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077705, intron 9 of 15)	intron (NM_001077705, intron 9 of 15)	5780.0	NM_013545	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19218086-3	chr7	19217624	19218624	+	862.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175668, intron 1 of 1)	intron (NM_175668, intron 1 of 1)	5586.0	NM_175668	319197.0	Mm.135984	NM_175668	ENSMUSG00000044317	Gpr4	-	G protein-coupled receptor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54848360-2	chr18	54847860	54848860	+	862.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	141820.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-69416058-2	chr17	69415558	69416558	+	862.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_026848)	promoter-TSS (NR_026848)	-389.0	NR_026848	77533.0	Mm.266592	NR_026848		C030034I22Rik	-	RIKEN cDNA C030034I22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4861636-2	chr16	4861136	4862136	+	862.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030192, intron 11 of 15)	intron (NM_030192, intron 11 of 15)	18215.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-101031525-1	chr9	101031025	101032025	+	862.0	f1_c57bl6.idr	intron (NM_001311149, intron 2 of 13)	intron (NM_001311149, intron 2 of 13)	3359.0	NM_001311149	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	1.0	3.5	5.5	1.0	2.5	0.5
Merged-chr1-171562910-1	chr1	171562410	171563410	+	862.0	f0_balb.idr	intron (NM_018729, intron 1 of 8)	intron (NM_018729, intron 1 of 8)	3717.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163660224-3	chr2	163659707	163660707	+	862.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 2 of 4)	intron (NM_001039390, intron 2 of 4)	1749.0	NM_001164053	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-21938747-2	chr3	21938247	21939247	+	862.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-137905.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133968813-2	chr4	133968446	133969446	+	862.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_016957)	promoter-TSS (NM_016957)	-955.0	NM_016957	15331.0	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	2.5	12.5	23.5	7.0	17.5	15.0
Merged-chr10-60757221-3	chr10	60756723	60757723	+	862.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4441.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145804068-2	chr6	145803568	145804568	+	862.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4315.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118692697-2	chr9	118692197	118693197	+	862.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 14 of 27)	MER5A|DNA|hAT-Charlie	-18995.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	14.0	4.5	1.0	3.0	1.0
Merged-chr13-13349519-3	chr13	13349021	13350021	+	862.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44103.0	NM_031999	83924.0	Mm.379269	NM_031999	ENSMUSG00000021306	Gpr137b	AI788917|AU016435|AW546472|C730041E01|C80550|C80741|D13Abb1e|Tm7sf1	G protein-coupled receptor 137B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128766884-1	chr2	128766384	128767384	+	862.0	f1_balb.idr	intron (NM_008587, intron 8 of 18)	B3|SINE|B2	-51419.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	8.0	31.5	8.0	4.5	33.0	16.0
Merged-chr18-84949621-2	chr18	84949121	84950121	+	862.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025969, intron 1 of 5)	intron (NM_025969, intron 1 of 5)	1903.0	NM_025969	67105.0	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	translocase of inner mitochondrial membrane 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117042012-1	chr4	117041512	117042512	+	862.0	f1_c57bl6.idr	intron (NM_001111277, intron 3 of 11)	intron (NM_001111277, intron 3 of 11)	22610.0	NM_001111277	108067.0	Mm.34612	NM_175135	ENSMUSG00000028683	Eif2b3	1190002P15Rik	eukaryotic translation initiation factor 2B, subunit 3	protein-coding	37.5	86.5	63.0	38.5	87.0	65.5
Merged-chr1-156939112-3	chr1	156938566	156939566	+	862.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357391, intron 1 of 19)	CpG	321.0	NM_001159966	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	0.0	6.0	4.0	2.0	4.0	0.5
Merged-chr12-100777742-2	chr12	100777242	100778242	+	862.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	-1315.0	NM_001361023	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88285354-5	chr7	88284804	88285804	+	861.995544	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009982, intron 2 of 6)	intron (NM_009982, intron 2 of 6)	7219.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29824482-4	chr19	29823980	29824980	+	861.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11506.0	NM_177721	240614.0	Mm.125503	NM_177721	ENSMUSG00000074909	Ranbp6	C630001B19	RAN binding protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137994205-3	chr4	137993686	137994686	+	861.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256195, intron 2 of 34)	CpG-10542	730.0	NM_172703	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	26.5	74.0	70.0	51.0	167.5	69.0
Merged-chr7-67461493-3	chr7	67461003	67462003	+	861.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88645.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	124.0	249.5	148.5	153.5	253.5	219.5
Merged-chr11-4710235-4	chr11	4709662	4710662	+	861.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026015, intron 1 of 5)	intron (NM_026015, intron 1 of 5)	5506.0	NM_001356390	67178.0	Mm.271056	NM_026015	ENSMUSG00000009076	Zmat5	2610510L01Rik|D11Bwg0572e|D11Bwg1548e	zinc finger, matrin type 5	protein-coding	0.0	0.0	6.5	0.0	0.0	0.0
Merged-chr14-75016641-4	chr14	75016129	75017129	+	861.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198642, intron 1 of 13)	intron (NM_198642, intron 1 of 13)	602.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121445360-4	chr14	121444860	121445860	+	861.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59894.0	NM_053079	56643.0	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	2.0	3.0	2.0	0.0	0.0	0.5
Merged-chr15-59860930-4	chr15	59860403	59861403	+	861.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65944.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	15.0	3.0	4.0	0.0	9.0	3.0
Merged-chr7-100952867-4	chr7	100952386	100953386	+	861.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	11480.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	7.5	13.5	20.0	19.0	22.0	21.0
Merged-chr12-85569570-3	chr12	85569119	85570119	+	861.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29486.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-17091457-3	chr7	17090841	17091841	+	861.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310628, intron 2 of 5)	intron (NM_001310628, intron 2 of 5)	17301.0	NM_007676	26436.0	Mm.143686	NM_007676	ENSMUSG00000066760	Psg16	Cea11|PSG|bCEA	pregnancy specific glycoprotein 16	protein-coding	0.0	3.5	0.0	0.0	4.0	0.5
Merged-chr7-19179331-3	chr7	19178818	19179818	+	861.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347582, exon 2 of 22)	exon (NM_001347582, exon 2 of 22)	-1852.0	NM_001162996	72205.0	Mm.154121	NM_028153	ENSMUSG00000040811	Eml2	1600029N02Rik|EMAP-2	echinoderm microtubule associated protein like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117780523-4	chr2	117780028	117781028	+	861.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32274.0	NR_126427	100504728.0	Mm.413174	NR_126427		Gm13985	-	predicted gene 13985	ncRNA	16.0	25.5	22.5	4.5	5.5	2.0
Merged-chr16-42907553-4	chr16	42907061	42908061	+	861.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285805)	promoter-TSS (NM_001285805)	-84.0	NM_001285805	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95514130-4	chr10	95513654	95514654	+	861.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-1008.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-64858541-4	chr14	64858050	64859050	+	861.8624880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 5 of 9)	intron (NM_177338, intron 5 of 9)	91307.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	12.5	34.5	10.0	11.5	33.5	9.5
Merged-chr5-8058267-3	chr5	8057773	8058773	+	861.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080974, intron 2 of 7)	intron (NM_001080974, intron 2 of 7)	1731.0	NM_001080974	109552.0	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54022558-4	chr6	54022048	54023048	+	861.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17384.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	2.5	5.0	3.0	0.0	0.0	4.0
Merged-chr5-144040817-2	chr5	144040317	144041317	+	861.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_033039, intron 1 of 4)	intron (NM_033039, intron 1 of 4)	9792.0	NM_033039	18261.0	Mm.270533	NM_033039	ENSMUSG00000029618	Ocm	-	oncomodulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120032733-2	chr2	120032268	120033268	+	861.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145378)	promoter-TSS (NM_145378)	-665.0	NM_145378	211429.0	Mm.41467	NM_145378	ENSMUSG00000098488	Pla2g4b	A030011C02Rik|Gm1013|cPLA2-beta	phospholipase A2, group IVB (cytosolic)	protein-coding	0.0	1.5	4.0	3.5	2.0	1.0
Merged-chr1-154031047-3	chr1	154030545	154031545	+	861.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131116.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53145984-3	chr4	53145481	53146481	+	861.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	MIRb|SINE|MIR	13914.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101258528-3	chr15	101258005	101259005	+	861.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8341.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21654514-3	chr5	21654003	21655003	+	861.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026034, intron 4 of 5)	intron (NM_026034, intron 4 of 5)	8519.0	NM_026034	67211.0	Mm.260782	NM_026034	ENSMUSG00000038525	Armc10	2810037C14Rik|Svh	armadillo repeat containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125496012-4	chr7	125495471	125496471	+	861.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4429.0	NM_026330	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	23.0	104.5	68.0	45.5	93.5	48.0
Merged-chr16-33832846-4	chr16	33832384	33833384	+	861.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 1 of 14)	intron (NM_001145884, intron 1 of 14)	3219.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-75694615-4	chr12	75694124	75695124	+	861.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME4b|LINE|L1	-25087.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88492870-4	chr10	88492359	88493359	+	861.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144807, intron 1 of 7)	intron (NM_144807, intron 1 of 7)	11111.0	NR_027477	212862.0	Mm.288897	NM_144807	ENSMUSG00000060002	Chpt1	-	choline phosphotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11352140-3	chr16	11351618	11352618	+	861.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 3 of 20)	intron (NM_028964, intron 3 of 20)	29214.0	NM_028964	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8416291-3	chr10	8415805	8416805	+	861.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 1 of 7)	intron (NM_177387, intron 1 of 7)	102520.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-84869004-3	chr11	84868456	84869456	+	861.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153144, intron 2 of 13)	intron (NM_153144, intron 2 of 13)	-1049.0	NR_131201	102635561.0	Mm.341797	NR_131197		Ggnbp2os	-	gametogenetin binding protein 2, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25295152-3	chr10	25294619	25295619	+	861.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 1 of 7)	intron (NM_018747, intron 1 of 7)	4044.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	69.0	148.0	133.0	0.0	11.0	6.0
Merged-chr4-45941883-4	chr4	45941375	45942375	+	861.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198660, exon 32 of 38)	exon (NM_198660, exon 32 of 38)	-23460.0	NM_001290475	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6710604-2	chr11	6710104	6711104	+	861.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9433.0	NR_046025	626419.0	Mm.390334	NR_046025	ENSMUSG00000086808	Gm11981	-	predicted gene 11981	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116103718-4	chr11	116103229	116104229	+	861.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6506.0	NM_001205081	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-31347314-4	chr13	31346808	31347808	+	861.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-106222.0	NR_045957	73924.0	Mm.417825	NR_045957	ENSMUSG00000087460	4930401O12Rik	-	RIKEN cDNA 4930401O12 gene	ncRNA	2.0	0.0	0.0	0.0	1.5	0.0
Merged-chr9-103490562-2	chr9	103490062	103491062	+	861.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359465, intron 3 of 4)	intron (NM_001359465, intron 3 of 4)	-10234.0	NM_001002896	107993.0	Mm.335403	NM_001002896	ENSMUSG00000032556	Bfsp2	AI448593|CP49	beaded filament structural protein 2, phakinin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-48790446-4	chr11	48789950	48790950	+	861.7374880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9910.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94345732-3	chr10	94345220	94346220	+	861.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	33771.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	17.5	51.0	30.0	12.0	4.5	6.5
Merged-chr5-100628154-4	chr5	100627626	100628626	+	861.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46130.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	0.0	2.5	5.0	0.0	5.0	8.5
Merged-chr18-32369985-4	chr18	32369502	32370502	+	861.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045403, intron 2 of 2)	Lx9|LINE|L1	-7215.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47188432-4	chr6	47187931	47188931	+	861.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004357, intron 20 of 23)	intron (NM_001004357, intron 20 of 23)	-55965.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.0	13.0	8.0	11.0	3.0	1.5
Merged-chr19-8803046-2	chr19	8802546	8803546	+	861.6999509999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_001098237, exon 2 of 2)	exon (NM_001098237, exon 2 of 2)	516.0	NM_001098237	75291.0	Mm.23423	NM_133759	ENSMUSG00000071661	Zbtb3	4930563M09Rik	zinc finger and BTB domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122544408-4	chr10	122543812	122544812	+	861.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25579.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	10.0	3.0	4.0	2.5	1.0	5.5
Merged-chr4-155959489-4	chr4	155959011	155960011	+	861.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001039157)	TTS (NM_001039157)	-2801.0	NM_026125	67389.0	Mm.29140	NM_026125	ENSMUSG00000023571	C1qtnf12	1110035L05Rik|C1qdc2|CTRP12|Fam132a|alipolin	C1q and tumor necrosis factor related 12	protein-coding	10.0	4.5	6.0	0.0	9.0	0.0
Merged-chr5-135951940-3	chr5	135951396	135952396	+	861.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17255.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	1.0	8.0	4.0	2.0	1.5	4.5
Merged-chr7-132304649-3	chr7	132304203	132305203	+	861.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029935, intron 1 of 7)	intron (NM_029935, intron 1 of 7)	-10961.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-85218288-3	chr17	85217786	85218786	+	861.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028576, intron 3 of 10)	MLT1H1|LTR|ERVL-MaLR	127586.0	NM_028576	73582.0	Mm.260753	NM_028576	ENSMUSG00000071037	Camkmt	1700106N22Rik|AI480743|AV099781|CLNMT|CaM KMT	calmodulin-lysine N-methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34921358-3	chr19	34920860	34921860	+	861.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362434)	promoter-TSS (NM_001362434)	-998.0	NM_001362434	240641.0	Mm.278471	NM_183046	ENSMUSG00000024795	Kif20b	33cex|C330014J10Rik|MPP1|Mphosph1|magoo	kinesin family member 20B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28950961-4	chr17	28950466	28951466	+	861.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1470.0	NM_001356300	66989.0	Mm.435	NM_025888	ENSMUSG00000005936	Kctd20	2410004N11Rik|AI451943|AW541186|D17Ertd562e	potassium channel tetramerisation domain containing 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46128737-3	chr11	46128250	46129250	+	861.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311209, intron 1 of 11)	intron (NM_001311209, intron 1 of 11)	846.0	NM_001311209	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57390870-3	chr16	57390365	57391365	+	861.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	37588.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84950793-3	chr18	84950318	84951318	+	861.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025969, intron 1 of 5)	intron (NM_025969, intron 1 of 5)	706.0	NM_025969	67105.0	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	translocase of inner mitochondrial membrane 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27317362-3	chr14	27316865	27317865	+	861.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 2 of 10)	intron (NM_027871, intron 2 of 10)	-18672.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	4.0	2.0	2.0	0.0	1.0	1.0
Merged-chr14-73257532-3	chr14	73257034	73258034	+	861.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 17 of 26)	intron (NM_009029, intron 17 of 26)	19643.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35028077-6	chr7	35027548	35028548	+	861.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 11 of 14)	intron (NM_008820, intron 11 of 14)	28518.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-6138811-3	chr8	6138315	6139315	+	861.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1033528.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	0.0	8.5	4.0	0.0	1.0	0.0
Merged-chr12-117378628-1	chr12	117378128	117379128	+	861.6666869999999	f0_balb.idr	Intergenic	Intergenic	-41616.0	NR_044987	432713.0	Mm.459210	NR_044987	ENSMUSG00000101930	Gm5441	-	predicted gene 5441	ncRNA	2.5	10.5	3.0	3.0	4.0	10.5
Merged-chr7-4500464-3	chr7	4500019	4501019	+	861.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029834, intron 1 of 21)	intron (NM_029834, intron 1 of 21)	1161.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	23.5	17.5	20.0	12.5	35.0	19.0
Merged-chr12-20232995-5	chr12	20232320	20233320	+	861.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	582959.0	NR_015521	69513.0	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3640076-3	chr4	3639582	3640582	+	861.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16424.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	5.0	21.0	8.0	1.0	6.0	4.0
Merged-chr4-83322954-3	chr4	83322450	83323450	+	861.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 1 of 19)	intron (NM_027238, intron 1 of 19)	1239.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-144469410-2	chr7	144468910	144469910	+	861.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357116, intron 1 of 15)	intron (NM_001357116, intron 1 of 15)	1525.0	NM_007803	13043.0	Mm.205601	NM_007803	ENSMUSG00000031078	Cttn	1110020L01Rik|Ems1	cortactin	protein-coding	0.0	1.0	0.0	1.5	0.0	0.5
Merged-chr5-110174553-4	chr5	110174046	110175046	+	861.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040430, intron 1 of 2)	RLTR31D_MM|LTR|ERVK	1958.0	NR_040431	100504007.0	Mm.441495	NR_040430	ENSMUSG00000086247	Gm15787	-	predicted gene 15787	ncRNA	14.0	12.0	16.0	9.5	13.5	8.5
Merged-chr6-87842885-4	chr6	87842393	87843393	+	861.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013493, exon 5 of 5)	3' UTR (NM_013493, exon 5 of 5)	-4134.0	NM_133934	57905.0	Mm.241546	NM_133934	ENSMUSG00000030056	Isy1	5830446M03Rik|AI181014|AU020769	ISY1 splicing factor homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95517515-5	chr3	95516903	95517903	+	861.659973	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9383.0	NM_021281	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	33.0	17.0	13.5	14.0	9.0	7.5
Merged-chr7-101503567-4	chr7	101503078	101504078	+	861.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008548, intron 14 of 30)	intron (NM_001008548, intron 14 of 30)	28202.0	NR_029791	387157.0		NR_029791	ENSMUSG00000065446	Mir139	Mirn139|mir-139|mmu-mir-139	microRNA 139	ncRNA	0.0	2.5	1.0	0.0	0.0	1.5
Merged-chr17-71003392-2	chr17	71002892	71003892	+	861.625	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026064)	promoter-TSS (NM_026064)	-859.0	NM_026064	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	0.5	14.0	6.0	4.0	0.0	7.5
Merged-chr3-37728398-4	chr3	37727974	37728974	+	861.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4114.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143907611-4	chr7	143907127	143908127	+	861.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25488.0	NR_105830	102465217.0		NR_105830	ENSMUSG00000099321	Mir6404	Gm28014|mmu-mir-6404	microRNA 6404	ncRNA	35.0	18.0	41.5	1.5	5.0	4.5
Merged-chr6-34955694-4	chr6	34955200	34956200	+	861.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025573, intron 5 of 7)	intron (NM_001025573, intron 5 of 7)	22299.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71644253-4	chr2	71643744	71644744	+	861.6124880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	(CA)n|Simple_repeat|Simple_repeat	-75173.0	NR_037979	381371.0	Mm.330284	NM_201366	ENSMUSG00000064263	Platr26	Gm1631	pluripotency associated transcript 26	ncRNA	2.0	6.5	8.5	7.0	4.0	0.0
Merged-chr11-119258681-3	chr11	119258231	119259231	+	861.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175430, intron 16 of 18)	MLT2B2|LTR|ERVL	-9232.0	NM_001159324	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	34.0	70.0	89.0	22.0	102.0	81.0
Merged-chr6-125243816-3	chr6	125243321	125244321	+	861.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-6794.0	NM_001286753	21940.0	Mm.367714	NM_001033126	ENSMUSG00000030336	Cd27	S152|Tnfrsf7|Tp55	CD27 antigen	protein-coding	4.0	0.0	2.0	4.0	0.0	2.0
Merged-chr10-83652609-3	chr10	83652138	83653138	+	861.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR1a_Mm|LTR|ERVK	-3974.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-141038561-4	chr5	141038059	141039059	+	861.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37963.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154593271-4	chr2	154592763	154593763	+	861.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021534, intron 2 of 3)	intron (NM_021534, intron 2 of 3)	10410.0	NM_021534	59038.0	Mm.24673	NM_021534	ENSMUSG00000000876	Pxmp4	3010018P03Rik|Pmp24	peroxisomal membrane protein 4	protein-coding	0.0	0.0	1.0	1.5	0.0	1.5
Merged-chr3-146564486-4	chr3	146564043	146565043	+	861.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32606.0	NM_009474	22262.0	Mm.10865	NM_009474	ENSMUSG00000028186	Uox	AI663847	urate oxidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83148513-4	chr15	83148001	83149001	+	861.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 1 of 7)	PB1|SINE|Alu	877.0	NM_178627	73826.0	Mm.23758	NM_178627	ENSMUSG00000041815	Poldip3	1110008P04Rik|AA408269|AL022852|C77954|PDIP46|SKAR|mKIAA1649	polymerase (DNA-directed), delta interacting protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39265274-4	chr18	39264767	39265767	+	861.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 17 of 21)	intron (NM_001361073, intron 17 of 21)	221978.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-12299889-4	chr12	12299409	12300409	+	861.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	37770.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	7.0	4.0	2.5	18.5	24.5	10.0
Merged-chr14-105505188-3	chr14	105504686	105505686	+	861.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045921, intron 1 of 2)	intron (NR_045921, intron 1 of 2)	6398.0	NR_045921	74864.0	Mm.159344	NR_045921	ENSMUSG00000022116	4930449E01Rik	-	RIKEN cDNA 4930449E01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88654867-3	chr3	88654372	88655372	+	861.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1730.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	1.5	2.5	0.0	1.5	2.0	0.0
Merged-chr8-25519380-3	chr8	25518883	25519883	+	861.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010206, exon 1 of 18)	5' UTR (NM_010206, exon 1 of 18)	624.0	NM_001079908	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-96539290-6	chr7	96538777	96539777	+	861.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310762, intron 4 of 32)	L3|LINE|CR1	-197313.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	0.5	3.0	0.5	4.0	11.5	5.0
Merged-chr12-25438537-3	chr12	25438041	25439041	+	861.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	309367.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	1.5	4.5	2.0	5.0	1.5	2.0
Merged-chr12-71864717-4	chr12	71864214	71865214	+	861.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026102, intron 1 of 25)	intron (NM_026102, intron 1 of 25)	-24829.0	NM_001286452	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	1.0	10.5	5.0	6.0	6.5	3.0
Merged-chr2-77277873-4	chr2	77277398	77278398	+	861.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175465, intron 1 of 17)	L1MB7|LINE|L1	2694.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-99194768-3	chr11	99194225	99195225	+	861.533325	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR24|LTR|ERV1	36292.0	NM_020618	57376.0	Mm.379086	NM_020618	ENSMUSG00000037935	Smarce1	2810417B20Rik|5830412H02Rik|9030408N19Rik|Baf27	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding	1.5	6.5	7.0	1.0	2.5	3.0
Merged-chr11-79019477-3	chr11	79018970	79019970	+	861.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348207, intron 16 of 17)	intron (NM_001348207, intron 16 of 17)	-4127.0	NR_045873	790910.0	Mm.440410	NR_045873		Gm11201	-	predicted gene 11201	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118941265-4	chr14	118940686	118941686	+	861.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008929, intron 1 of 11)	intron (NM_008929, intron 1 of 11)	3254.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-7996391-2	chr14	7995891	7996891	+	861.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-2209.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166903915-2	chr2	166903415	166904415	+	861.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2181.0	NM_023565	110750.0	Mm.22417	NM_023565	ENSMUSG00000002718	Cse1l	2610100P18Rik|AA407533|Capts|Cas|Xpo2	chromosome segregation 1-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43832570-2	chr19	43832063	43833063	+	861.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013806, intron 29 of 31)	intron (NM_013806, intron 29 of 31)	-6240.0	NR_033472	100038628.0	Mm.212585	NR_033472	ENSMUSG00000025194	Gm10768	-	predicted gene 10768	ncRNA	0.0	5.5	0.5	0.0	1.0	0.0
Merged-chr3-19986309-2	chr3	19985809	19986809	+	861.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276248, intron 15 of 19)	Lx4B|LINE|L1	29255.0	NM_001276248	12870.0	Mm.13787	NM_007752	ENSMUSG00000003617	Cp	D3Ertd555e	ceruloplasmin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29675147-2	chr19	29674647	29675647	+	861.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22794.0	NM_029993	77836.0	Mm.138437	NM_029993	ENSMUSG00000024806	Mlana	A930034P04Rik|Mart1	melan-A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111365072-2	chr12	111364572	111365572	+	861.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183016, intron 1 of 36)	L1MB8|LINE|L1	12646.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-45873457-2	chr1	45872957	45873957	+	861.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52137.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-91244345-2	chr10	91243845	91244845	+	861.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23726.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121636009-2	chr9	121635509	121636509	+	861.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026915, intron 1 of 5)	intron (NM_026915, intron 1 of 5)	5584.0	NM_026915	69032.0	Mm.33351	NM_026915	ENSMUSG00000032530	Lyzl4	1810009N24Rik|AI504271|Lyc4|Lyza	lysozyme-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-33959568-2	chr14	33959068	33960068	+	861.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015745, intron 2 of 3)	intron (NM_015745, intron 2 of 3)	5565.0	NM_015745	19661.0	Mm.436622	NM_015745	ENSMUSG00000041534	Rbp3	Irbp|Rbp-3	retinol binding protein 3, interstitial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35047703-2	chr9	35047221	35048221	+	861.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 10 of 10)	intron (NM_009178, intron 10 of 10)	-69007.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	4.5	4.0	7.0	2.5	4.0	9.5
Merged-chr4-59253681-2	chr4	59253181	59254181	+	861.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6370.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	14.5	67.5	60.0	30.0	57.5	44.5
Merged-chr1-85960463-3	chr1	85959951	85960951	+	861.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033290, intron 1 of 1)	MIRc|SINE|MIR	604.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-46216705-2	chr9	46216205	46217205	+	861.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 21 of 24)	RSINE1|SINE|B4	-11925.0	NM_009692	11806.0	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr8-109682801-2	chr8	109682301	109683301	+	861.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_155034, intron 2 of 10)	intron (NR_155034, intron 2 of 10)	10493.0	NR_155034	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-45069039-2	chr8	45068539	45069539	+	861.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008639)	promoter-TSS (NM_008639)	-171.0	NM_008639	17773.0	Mm.5133	NM_008639	ENSMUSG00000054764	Mtnr1a	MR|MelR	melatonin receptor 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143467874-2	chr5	143467374	143468374	+	861.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 2 of 14)	intron (NM_144915, intron 2 of 14)	3381.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-70045920-2	chr10	70045420	70046420	+	861.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51201.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101265183-2	chr15	101264683	101265683	+	861.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1663.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	12.5	22.0	16.0	0.5	8.5	10.5
Merged-chr4-95844270-2	chr4	95843770	95844770	+	861.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113412, intron 13 of 15)	intron (NM_001113412, intron 13 of 15)	122765.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24716439-2	chr17	24715939	24716939	+	861.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026205, exon 4 of 4)	exon (NM_026205, exon 4 of 4)	1618.0	NM_026205	67504.0	Mm.46159	NM_026205	ENSMUSG00000008482	Rnf151	1700010O16Rik|AV047371	ring finger protein 151	protein-coding	0.0	0.0	0.5	2.5	0.0	2.0
Merged-chr13-49220114-2	chr13	49219614	49220614	+	861.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4088.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76716052-2	chr15	76715552	76716552	+	861.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145471)	TTS (NM_145471)	5411.0	NM_001358893	223664.0	Mm.277582	NM_145471	ENSMUSG00000033728	Lrrc14	E130306I01Rik|mKIAA0014	leucine rich repeat containing 14	protein-coding	3.0	1.5	6.5	1.5	6.5	9.0
Merged-chr9-32518016-2	chr9	32517516	32518516	+	861.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	23436.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137782939-2	chr5	137782439	137783439	+	861.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144913, intron 2 of 3)	B1_Mus1|SINE|Alu	3762.0	NM_144913	231803.0	Mm.61193	NM_144913	ENSMUSG00000029726	Mepce	Bcdin3|D5Wsu46e	methylphosphate capping enzyme	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87618837-2	chr3	87618309	87619309	+	861.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360197, intron 1 of 38)	intron (NM_001360197, intron 1 of 38)	1250.0	NM_001360195	213498.0	Mm.287267	NM_001003912	ENSMUSG00000041977	Arhgef11	PDZ-RhoGEF|Prg|RhoGEF|mKIAA0380	Rho guanine nucleotide exchange factor (GEF) 11	protein-coding	16.0	70.5	20.5	20.5	82.0	38.0
Merged-chr7-123293192-4	chr7	123292693	123293693	+	861.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122641, intron 16 of 18)	intron (NM_001122641, intron 16 of 18)	76722.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99194291-2	chr10	99193791	99194791	+	861.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 12 of 12)	intron (NR_153333, intron 12 of 12)	-68940.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8736152-4	chr10	8735682	8736682	+	861.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 16 of 19)	L1MB2|LINE|L1	149888.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	9.0	26.5	27.0	6.5	33.0	14.0
Merged-chr2-33090161-2	chr2	33089661	33090661	+	861.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355201, intron 2 of 29)	intron (NM_001355201, intron 2 of 29)	-2908.0	NM_178888	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79565231-6	chr3	79564764	79565764	+	861.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	2415.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62275037-4	chr4	62274524	62275524	+	861.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-11405.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180227568-6	chr2	180226844	180227844	+	861.477783	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1485.0	NM_001081171	16776.0	Mm.4339	NM_001081171	ENSMUSG00000015647	Lama5	AA408760|AA408762|AI853660|[a]5|laminin-511|mKIAA0533	laminin, alpha 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3646228-4	chr4	3645750	3646750	+	861.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-10256.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	17.0	30.0	7.5	7.0	33.0	12.0
Merged-chr2-102765055-4	chr2	102764558	102765558	+	861.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077514, intron 8 of 10)	intron (NM_001077514, intron 8 of 10)	-18298.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	1.0	1.5	1.5	6.0	19.5	0.0
Merged-chr9-22092778-4	chr9	22092269	22093269	+	861.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6484.0	NM_009922	12797.0	Mm.4356	NM_009922	ENSMUSG00000001349	Cnn1	CN|CnnI	calponin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-39217413-3	chr15	39216938	39217938	+	861.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256383, intron 1 of 25)	LTR41B|LTR|ERVL	19152.0	NM_053271	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-41523682-3	chr3	41523182	41524182	+	861.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130791, intron 1 of 5)	RSINE1|SINE|B4	4792.0	NR_130791	78648.0	Mm.366093	NR_130791		2400006E01Rik	Gm43733|lncRNA-JADE	RIKEN cDNA 2400006E01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-9593943-4	chr1	9593435	9594435	+	861.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015470, intron 3 of 4)	intron (NR_015470, intron 3 of 4)	-7332.0	NM_178399	76982.0	Mm.491098	NM_178399	ENSMUSG00000067879	3110035E14Rik	AI415019|AV164974|R75066	RIKEN cDNA 3110035E14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29549265-4	chr17	29548770	29549770	+	861.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198647)	promoter-TSS (NM_198647)	323.0	NM_001162901	71138.0	Mm.158581	NM_001162901	ENSMUSG00000079580	Tmem217	4933413N12Rik|EG622644	transmembrane protein 217	protein-coding	2.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95662956-4	chr3	95662437	95663437	+	861.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008562, exon 3 of 3)	3' UTR (NM_008562, exon 3 of 3)	4216.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70507938-2	chr8	70507369	70508369	+	861.416626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001348229)	TTS (NM_001348229)	-1117.0	NM_025577	66462.0	Mm.28242	NM_025577	ENSMUSG00000058833	Rex1bd	2810428I15Rik	required for excision 1-B domain containing	protein-coding	5.0	9.5	6.0	8.5	11.5	4.5
Merged-chr2-21281067-2	chr2	21280567	21281567	+	861.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75343.0	NM_177588	208967.0	Mm.268841	NM_177588	ENSMUSG00000048550	Thnsl1	AW413632	threonine synthase-like 1 (bacterial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34171155-5	chr17	34170678	34171678	+	861.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	16152.0	NM_013585	16912.0	Mm.390983	NM_013585	ENSMUSG00000096727	Psmb9	Lmp-2|Lmp2	proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	protein-coding	13.5	25.0	20.0	13.0	13.5	5.0
Merged-chr14-122049256-3	chr14	122048740	122049740	+	861.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14566.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	0.0	5.0	3.5	0.0	6.0	6.0
Merged-chr5-52133021-4	chr5	52132511	52133511	+	861.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3006.0	NR_105845	102466648.0		NR_105845	ENSMUSG00000098726	Mir6417	Gm27334|mmu-mir-6417	microRNA 6417	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-181126928-4	chr1	181126401	181127401	+	861.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026171, intron 10 of 22)	intron (NM_026171, intron 10 of 22)	17303.0	NM_026171	67459.0	Mm.263464	NM_026171	ENSMUSG00000026516	Nvl	1200009I24Rik	nuclear VCP-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115333875-4	chr5	115333372	115334372	+	861.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025573)	TTS (NM_025573)	6695.0	NR_036616	108014.0	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	15.5	14.0	8.0	4.5	4.5	2.5
Merged-chr17-7914240-2	chr17	7913740	7914740	+	861.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11760.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53075153-2	chr4	53074653	53075653	+	861.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_013454, exon 22 of 50)	exon (NM_013454, exon 22 of 50)	63273.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73416521-4	chr17	73416018	73417018	+	861.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-17222.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-32252478-3	chr1	32251977	32252977	+	861.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133235, intron 2 of 8)	(CAAAA)n|Simple_repeat|Simple_repeat	79755.0	NM_133235	170771.0	Mm.336594	NM_133235	ENSMUSG00000026058	Khdrbs2	6330586C16Rik|Slim1|Slm-1|Slm1|TG-RP135|Tg(LRRK2*R1441G)135Cjli|mSLM-1	KH domain containing, RNA binding, signal transduction associated 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80140305-3	chr10	80139878	80140878	+	861.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-1011.0	NR_036582	100503659.0	Mm.485395	NM_015761	ENSMUSG00000035640	Cbarp	9630008F14|Dos|R29144/1	calcium channel, voltage-dependent, beta subunit associated regulatory protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34895244-3	chr8	34894751	34895751	+	861.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 3 of 26)	intron (NM_175091, intron 3 of 26)	70439.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	10.5	5.0	1.0	1.0	0.0	0.0
Merged-chr16-16584836-4	chr16	16584341	16585341	+	861.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	15137.0	NM_001301817	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35898229-3	chr16	35897736	35898736	+	861.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-26854.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-87472663-3	chr8	87472168	87473168	+	861.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019626)	promoter-TSS (NM_019626)	-76.0	NM_019626	12404.0	Mm.4880	NM_019626	ENSMUSG00000031654	Cbln1	AI323299	cerebellin 1 precursor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141100046-3	chr7	141099486	141100486	+	861.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023059, intron 1 of 9)	CpG	560.0	NM_023059	24058.0	Mm.38017	NM_023059	ENSMUSG00000025494	Sigirr	AI256711|TIR8	single immunoglobulin and toll-interleukin 1 receptor (TIR) domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154856289-4	chr4	154855785	154856785	+	861.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172878)	promoter-TSS (NM_172878)	85.0	NM_172878	242800.0	Mm.72944	NM_172878	ENSMUSG00000046637	Ttc34	4932418L02|B230396O12Rik	tetratricopeptide repeat domain 34	protein-coding	0.5	0.0	0.0	5.5	7.0	15.5
Merged-chr6-38663056-3	chr6	38662556	38663556	+	861.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001101507)	promoter-TSS (NM_001101507)	-13.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95827674-3	chr15	95827178	95828178	+	861.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155276, intron 1 of 1)	MLT1B|LTR|ERVL-MaLR	2394.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142497935-3	chr7	142497420	142498420	+	861.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163666)	promoter-TSS (NM_001163666)	-916.0	NM_001347549	21957.0	Mm.389992	NM_011620	ENSMUSG00000061723	Tnnt3	fTnT	troponin T3, skeletal, fast	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135705687-3	chr1	135705188	135706188	+	861.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14375.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63409390-4	chr14	63408869	63409869	+	861.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007549, intron 1 of 12)	intron (NM_007549, intron 1 of 12)	7818.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142334368-3	chr7	142333849	142334849	+	861.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177265, intron 3 of 3)	intron (NM_177265, intron 3 of 3)	30847.0	NM_015809	50775.0	Mm.389990	NM_015809	ENSMUSG00000045236	Krtap5-4	-	keratin associated protein 5-4	protein-coding	0.0	1.5	0.0	0.0	1.5	2.0
Merged-chr5-31563793-3	chr5	31563294	31564294	+	861.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7603.0	NR_102275	100740.0	Mm.23370	NR_102275		AI839979	-	expressed sequence AI839979	ncRNA	0.0	2.0	0.5	0.0	0.0	0.0
Merged-chr6-24721897-3	chr6	24721399	24722399	+	861.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11346.0	NM_028920	74409.0	Mm.87331	NM_028920	ENSMUSG00000029679	Hyal6	4932701A20Rik|Hyal-ps1|Hyalp1	hyaluronoglucosaminidase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92693354-4	chr16	92692854	92693854	+	861.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 3 of 6)	intron (NM_001111022, intron 3 of 6)	3975.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88275647-5	chr1	88275170	88276170	+	861.2999880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172505, intron 2 of 4)	intron (NM_172505, intron 2 of 4)	1887.0	NM_172505	212427.0	Mm.384762	NM_172505		A730008H23Rik	Fleg1	RIKEN cDNA A730008H23 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144110886-4	chr3	144110395	144111395	+	861.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91437.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-30025568-2	chr17	30025068	30026068	+	861.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_151443, intron 1 of 4)	intron (NR_151443, intron 1 of 4)	20529.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102812100-2	chr2	102811556	102812556	+	861.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001177785, exon 16 of 16)	3' UTR (NM_001177785, exon 16 of 16)	-65296.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	13.0	28.0	12.5	5.0	27.0	14.0
Merged-chr14-104299312-4	chr14	104298781	104299781	+	861.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	168718.0	NM_011143	18996.0	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66125095-3	chr5	66124610	66125610	+	861.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	ID4|SINE|ID	25868.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	16.5	21.5	12.5	7.5	22.5	31.5
Merged-chr17-78797363-4	chr17	78796831	78797831	+	861.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081179, intron 21 of 35)	intron (NM_001081179, intron 21 of 35)	38050.0	NM_001081179	320473.0	Mm.46309	NM_028084	ENSMUSG00000039414	Heatr5b	2010013B10Rik|A230048G03Rik|AV071430|D330050P16Rik|mKIAA1414	HEAT repeat containing 5B	protein-coding	23.0	18.5	7.5	14.0	13.0	7.0
Merged-chr11-61142465-4	chr11	61141962	61142962	+	861.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021349, intron 2 of 3)	intron (NM_021349, intron 2 of 3)	1627.0	NM_021349	57916.0	Mm.265915	NM_021349	ENSMUSG00000010142	Tnfrsf13b	1200009E08Rik|Taci	tumor necrosis factor receptor superfamily, member 13b	protein-coding	0.0	4.0	0.5	0.0	3.5	0.5
Merged-chr14-25465259-2	chr14	25464759	25465759	+	861.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	6074.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112648174-3	chr12	112647638	112648638	+	861.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013929, intron 3 of 3)	intron (NM_013929, intron 3 of 3)	3310.0	NM_013929	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51100141-3	chr13	51099637	51100637	+	861.2333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001283030)	promoter-TSS (NM_001283030)	590.0	NR_029463	77428.0	Mm.405630	NR_029463		9430083A17Rik	-	RIKEN cDNA 9430083A17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118970776-4	chr10	118970247	118971247	+	861.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43604.0	NR_110482	216377.0	Mm.208936	NR_110482	ENSMUSG00000112854	Gm38403	C230029M16	predicted gene, 38403	ncRNA	0.0	0.5	0.0	0.0	0.5	0.5
Merged-chr9-37656537-3	chr9	37656046	37657046	+	861.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025289, intron 1 of 8)	intron (NM_025289, intron 1 of 8)	766.0	NM_025289	21376.0	Mm.28689	NM_025289	ENSMUSG00000011114	Tbrg1	AA408552|AA409675|Niam|Tb-5|mFLJ00213	transforming growth factor beta regulated gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20114461-3	chr13	20113941	20114941	+	861.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	23934.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.0	6.0	2.0	10.5	3.0	1.0
Merged-chr7-45572139-3	chr7	45571634	45572634	+	861.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243052, intron 1 of 10)	intron (NM_001243052, intron 1 of 10)	855.0	NM_001243052	12036.0	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat(m)|Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106369101-4	chr9	106368651	106369651	+	861.212524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153459, exon 1 of 3)	exon (NM_153459, exon 1 of 3)	519.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	2.0	22.5	9.0	13.5	26.0	12.0
Merged-chr5-105005241-4	chr5	105004733	105005733	+	861.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22516.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12047250-4	chr13	12046732	12047732	+	861.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023868, intron 1 of 104)	intron (NM_023868, intron 1 of 104)	59713.0	NM_023868	20191.0	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117452335-4	chr10	117451844	117452844	+	861.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4909.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	12.0	7.5	8.5	14.0	8.5	7.0
Merged-chr2-174075434-2	chr2	174074934	174075934	+	861.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1617.0	NM_172675	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33098023-3	chr2	33097547	33098547	+	861.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355201, intron 2 of 29)	intron (NM_001355201, intron 2 of 29)	-10794.0	NM_178888	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90294203-3	chr9	90293702	90294702	+	861.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-23433.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34522435-3	chr1	34521938	34522938	+	861.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13210.0	NM_007685	12627.0	Mm.2531	NM_007685	ENSMUSG00000026124	Cfc1	AV265756|b2b970Clo|cryptic	cripto, FRL-1, cryptic family 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-5806655-4	chr10	5806153	5807153	+	861.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1188.0	NM_025995	67141.0	Mm.197520	NM_025995	ENSMUSG00000019773	Fbxo5	2510044I10Rik|C85305|Emi1|Fbxo31	F-box protein 5	protein-coding	39.0	106.0	63.5	33.5	99.0	67.0
Merged-chr18-21669930-3	chr18	21669423	21670423	+	861.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17555.0	NM_001081403	225266.0	Mm.436836	NM_001081403	ENSMUSG00000042514	Klhl14	6330403N15Rik|AI785250|printor	kelch-like 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111037597-4	chr9	111037095	111038095	+	861.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008522, intron 14 of 16)	intron (NM_008522, intron 14 of 16)	18303.0	NM_008522	17002.0	Mm.282359	NM_008522	ENSMUSG00000032496	Ltf	Csp82|Lf|MMS10R|Ms10r	lactotransferrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120702217-4	chr8	120701716	120702716	+	861.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	33896.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36645351-2	chr15	36644851	36645851	+	861.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12BD_Mm|LTR|ERVK	-36378.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104409147-2	chr9	104408641	104409641	+	861.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16972.0	NR_035516	100316725.0		NR_035516	ENSMUSG00000089406	Mir2136	mmu-mir-2136	microRNA 2136	ncRNA	12.5	41.5	34.0	39.5	74.0	71.5
Merged-chr1-134111187-2	chr1	134110687	134111687	+	861.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284524)	promoter-TSS (NM_001284524)	-55.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96536450-4	chr9	96535923	96536923	+	861.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-57748.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	1.5	4.0	2.0	0.0	6.5	7.0
Merged-chr13-54055636-3	chr13	54055143	54056143	+	861.138855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010076)	promoter-TSS (NM_010076)	15.0	NM_010076	13488.0	Mm.54161	NM_010076	ENSMUSG00000021478	Drd1	C030036C15Rik|Drd-1|Drd1a|Gpcr15	dopamine receptor D1	protein-coding	1.5	0.0	2.5	0.0	0.0	0.0
Merged-chr10-20311586-4	chr10	20311078	20312078	+	861.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153787)	promoter-TSS (NM_153787)	-891.0	NM_001025392	72567.0	Mm.294783	NM_153787	ENSMUSG00000037608	Bclaf1	2610102K23Rik|2700025J07Rik|2810454G14Rik|5730534O06Rik|AI450190|AW556225|Btf|mKIAA0164	BCL2-associated transcription factor 1	protein-coding	12.5	59.5	26.0	20.0	60.5	19.5
Merged-chr15-83205307-3	chr15	83204820	83205820	+	861.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33112.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29650272-3	chr2	29649779	29650779	+	861.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	L2a|LINE|L2	30559.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171451189-4	chr1	171450661	171451661	+	861.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172647, intron 1 of 9)	intron (NM_172647, intron 1 of 9)	13600.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	31.0	37.0	26.5	3.5	21.5	10.5
Merged-chr6-141075462-4	chr6	141074955	141075955	+	861.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-173814.0	NM_018779	54611.0	Mm.103728	NM_018779	ENSMUSG00000041741	Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11513730-2	chr2	11513230	11514230	+	861.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	ID_B1|SINE|B4	-11640.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-65515830-2	chr11	65515295	65516295	+	861.083374	f0_balb.idr|f1_balb.idr	Intergenic	L1MA4|LINE|L1	219037.0	NR_030417	791070.0		NR_030417	ENSMUSG00000076460	Mir744	Mirn744|mir-744|mmu-mir-744	microRNA 744	ncRNA	2.5	4.0	12.5	6.5	14.0	9.0
Merged-chr15-97372725-2	chr15	97372225	97373225	+	861.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 4 of 5)	RMER4B|LTR|ERVK	-125438.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-74643481-3	chr14	74642972	74643972	+	861.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172812, intron 1 of 2)	intron (NM_172812, intron 1 of 2)	2598.0	NM_172812	15558.0	Mm.214351	NM_172812	ENSMUSG00000034997	Htr2a	5-HT-2|5-HT-2A|E030013E04|Htr-2|Htr2	5-hydroxytryptamine (serotonin) receptor 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3647197-4	chr5	3646692	3647692	+	861.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026033, intron 1 of 4)	intron (NM_026033, intron 1 of 4)	744.0	NM_026033	67210.0	Mm.178424	NM_026033	ENSMUSG00000007415	Gatad1	2310031E19Rik|2810047M21Rik|8430439A17Rik|9130430G15Rik|B330017N08Rik|Odag	GATA zinc finger domain containing 1	protein-coding	11.5	1.5	4.5	11.5	1.5	4.5
Merged-chr13-70643846-4	chr13	70643333	70644333	+	861.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6199.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136736008-3	chr6	136735504	136736504	+	861.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145067, intron 12 of 25)	ORR1E|LTR|ERVL-MaLR	45738.0	NM_145067	14917.0	Mm.222729	NM_145067	ENSMUSG00000042638	Gucy2c	AI893437|GC-C|Gcc	guanylate cyclase 2c	protein-coding	3.0	2.5	1.0	3.0	0.0	10.0
Merged-chr1-52766004-4	chr1	52765485	52766485	+	861.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38627.0	NM_001357464	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	19.0	29.5	38.0	40.0	48.0	66.5
Merged-chr16-17205182-4	chr16	17204687	17205687	+	861.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2948.0	NM_001033338	239731.0	Mm.86671	NM_001033338	ENSMUSG00000071636	Rimbp3	Gm1759|Gm603|RIM-BP3|mKIAA1666	RIMS binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172513564-4	chr1	172513071	172514071	+	861.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7559.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	76.0	232.5	158.0	60.5	185.5	123.5
Merged-chr17-35739330-2	chr17	35738844	35739844	+	861.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33106.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	26.5	33.5	26.5	10.5	22.5	11.0
Merged-chr17-88274533-4	chr17	88274040	88275040	+	861.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	149028.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25652563-3	chr7	25652062	25653062	+	861.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007533, intron 1 of 8)	intron (NM_007533, intron 1 of 8)	6199.0	NM_007533	12039.0	Mm.25848	NM_007533	ENSMUSG00000060376	Bckdha	-	branched chain ketoacid dehydrogenase E1, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171103576-2	chr1	171103082	171104082	+	861.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2C_Mm|LTR|ERVL	-18079.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	1.0	7.0	14.0	1.0	12.0	1.5
Merged-chr15-101042860-2	chr15	101042360	101043360	+	861.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011323, exon 26 of 26)	3' UTR (NM_011323, exon 26 of 26)	11539.0	NM_001214911	668225.0	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16060303-1	chr1	16059803	16060803	+	861.0	f1_c57bl6.idr	Intergenic	MER5B|DNA|hAT-Charlie	33022.0	NM_001243238	75799.0	Mm.78557	NM_001243238	ENSMUSG00000067795	4930444P10Rik	-	RIKEN cDNA 4930444P10 gene	protein-coding	11.5	38.5	30.0	0.5	34.0	28.5
Merged-chr10-80027304-2	chr10	80026804	80027804	+	861.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347074, intron 17 of 22)	intron (NM_001347074, intron 17 of 22)	7629.0	NM_027521	70719.0	Mm.243954	NM_027521	ENSMUSG00000035697	Arhgap45	6330406L22Rik|AW539505|Ha-1|Hmha1	Rho GTPase activating protein 45	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17765922-2	chr12	17765422	17766422	+	861.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	L1MA4|LINE|L1	75113.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0.0	1.0	3.0	0.0	4.0	2.5
Merged-chr11-83068538-2	chr11	83068038	83069038	+	861.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011408, intron 1 of 1)	B3|SINE|B2	3426.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66369174-2	chr5	66368674	66369674	+	861.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310626, intron 8 of 15)	intron (NM_001310626, intron 8 of 15)	-31509.0	NM_001201416	11787.0	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34695021-1	chr11	34694521	34695521	+	861.0	f0_balb.idr	intron (NM_033374, intron 17 of 51)	intron (NM_033374, intron 17 of 51)	88884.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120507203-2	chr5	120506703	120507703	+	861.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3580.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9554032-1	chr18	9553532	9554532	+	861.0	f1_c57bl6.idr	Intergenic	Intergenic	65437.0	NM_007593	26369.0	Mm.195831	NM_007593	ENSMUSG00000050996	Cetn1	caltractin	centrin 1	protein-coding	1.5	1.5	1.5	3.0	3.0	9.5
Merged-chr4-150367019-4	chr4	150366509	150367509	+	861.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 1 of 22)	intron (NM_001085492, intron 1 of 22)	85093.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125341806-1	chr6	125341306	125342306	+	861.0	f1_c57bl6.idr	intron (NM_011324, intron 7 of 11)	L1MB7|LINE|L1	-7917.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	3.0	9.0	9.5	5.5	5.5	1.5
Merged-chr1-120265961-2	chr1	120265461	120266461	+	861.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133186)	promoter-TSS (NM_133186)	-681.0	NM_133186	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45855771-1	chr17	45855271	45856271	+	861.0	f0_balb.idr	Intergenic	MLT1H1|LTR|ERVL-MaLR	25681.0	NR_152136	75154.0	Mm.399341	NR_152136		4930542M03Rik	-	RIKEN cDNA 4930542M03 gene	ncRNA	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr17-35161654-2	chr17	35161154	35162154	+	861.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_020027, exon 5 of 31)	exon (NM_020027, exon 5 of 31)	3223.0	NM_001199044	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-142785516-4	chr6	142785020	142786020	+	861.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001145390)	TTS (NM_001145390)	18946.0	NM_001145390	330440.0	Mm.484618	NM_001033417	ENSMUSG00000048473	Sult6b2	Gm766	sulfotransferase family 6B, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74206039-2	chr1	74205539	74206539	+	861.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_035449)	TTS (NR_035449)	581.0	NR_035449	100316687.0		NR_035449	ENSMUSG00000087820	Mir1928	mmu-mir-1928	microRNA 1928	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24205127-2	chr17	24204584	24205584	+	861.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010947, exon 6 of 6)	3' UTR (NM_010947, exon 6 of 6)	478.0	NM_001163851	224617.0	Mm.301585	NM_173186	ENSMUSG00000036473	Tbc1d24	9630033P11|C530046L02Rik|mKIAA1171	TBC1 domain family, member 24	protein-coding	5.0	37.0	23.5	11.0	13.5	10.5
Merged-chr11-83058096-3	chr11	83057595	83058595	+	861.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7017.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-109307857-2	chr7	109307357	109308357	+	861.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355145, intron 10 of 10)	L1M3b|LINE|L1	-130761.0	NR_152110	74293.0	Mm.381252	NR_152110	ENSMUSG00000085407	1700095J03Rik	-	RIKEN cDNA 1700095J03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72485650-2	chr8	72485160	72486160	+	861.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177766, intron 4 of 5)	B4A|SINE|B4	6954.0	NM_177766	270066.0	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	27.5	49.0	25.0	4.5	12.5	1.5
Merged-chr15-89174540-2	chr15	89174040	89175040	+	861.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159521)	promoter-TSS (NM_001159521)	-589.0	NM_001159521	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156024639-2	chr1	156024160	156025160	+	861.0	f0_balb.idr|f1_balb.idr	intron (NM_144791, intron 4 of 6)	intron (NM_144791, intron 4 of 6)	10157.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	19.5	88.0	67.0	37.5	78.5	83.0
Merged-chr15-12051995-3	chr15	12051489	12052489	+	861.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55982.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79107893-4	chr2	79107381	79108381	+	861.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147545.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59509029-2	chr15	59508529	59509529	+	861.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	134831.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	4.5	7.0	10.0	3.0	10.0	1.5
Merged-chr5-108105692-3	chr5	108105191	108106191	+	861.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152817, intron 16 of 16)	intron (NR_152817, intron 16 of 16)	26929.0	NM_001347383	73130.0	Mm.363960	NM_028876	ENSMUSG00000063406	Tmed5	3110020O18Rik|4432412D15Rik|p24gamma2	transmembrane p24 trafficking protein 5	protein-coding	0.5	9.0	2.5	0.5	9.0	12.5
Merged-chr14-60444875-1	chr14	60444375	60445375	+	861.0	f1_balb.idr	Intergenic	RLTR40|LTR|ERVK	66589.0	NM_001164705	72125.0	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	3.0	21.0	13.0	0.5	4.0	13.5
Merged-chr12-73545947-3	chr12	73545391	73546391	+	861.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178715, exon 1 of 1)	exon (NM_178715, exon 1 of 1)	504.0	NM_178715	238257.0	Mm.251196	NM_178715	ENSMUSG00000034435	Tmem30b	9130011B11Rik	transmembrane protein 30B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102014611-2	chr7	102014111	102015111	+	861.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010531)	TTS (NM_010531)	3544.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115471330-1	chr5	115470830	115471830	+	861.0	f1_c57bl6.idr	intron (NM_001356586, intron 2 of 3)	intron (NM_001356586, intron 2 of 3)	5188.0	NM_001356587	18778.0	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0.0	11.0	2.0	11.0	1.5	2.0
Merged-chr5-36810728-2	chr5	36810228	36811228	+	861.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008550, intron 15 of 18)	intron (NM_008550, intron 15 of 18)	-13974.0	NM_026242	67568.0	Mm.332336	NM_026242	ENSMUSG00000055302	Mrfap1	9130413I22Rik|AL022827|Pam14	Morf4 family associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12920567-2	chr13	12920067	12921067	+	861.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84763.0	NM_031191	18811.0	Mm.88796	NM_031191	ENSMUSG00000079092	Prl2c2	Ghd2|MRP-1|PLF-1|Plf|Plf1	prolactin family 2, subfamily c, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-137571080-3	chr2	137570579	137571579	+	861.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-454559.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-89308565-2	chr7	89308065	89309065	+	861.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 2 of 14)	intron (NM_001360746, intron 2 of 14)	30222.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-41684157-2	chr5	41683655	41684655	+	861.0	f0_balb.idr|f1_balb.idr	intron (NM_001310592, intron 4 of 6)	Lx7|LINE|L1	23536.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	7.5	11.0	9.5	9.5	0.5	2.5
Merged-chr1-39735900-5	chr1	39735282	39736282	+	861.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14793.0	NM_001145660	619289.0	Mm.334107	NM_001145660	ENSMUSG00000057173	Rfx8	4933400N17Rik	regulatory factor X 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16287236-3	chr7	16286757	16287757	+	861.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136471)	promoter-TSS (NM_001136471)	-462.0	NM_001136471	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	34.5	44.0	39.5	21.0	36.5	34.5
Merged-chr9-44108060-2	chr9	44107560	44108560	+	861.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040631, intron 2 of 2)	intron (NM_001040631, intron 2 of 2)	751.0	NM_001190319	235312.0	Mm.227110	NM_145613	ENSMUSG00000079592	C1qtnf5	Ctrp5	C1q and tumor necrosis factor related protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91211252-2	chr1	91210773	91211773	+	861.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016894, intron 2 of 2)	intron (NM_016894, intron 2 of 2)	31451.0	NM_001168392	51801.0	Mm.3272	NM_016894	ENSMUSG00000034353	Ramp1	9130218E19Rik	receptor (calcitonin) activity modifying protein 1	protein-coding	0.0	0.0	0.0	0.0	1.5	0.0
Merged-chr2-148599654-4	chr2	148599151	148600151	+	861.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72964.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132411855-3	chr4	132411359	132412359	+	861.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161797, intron 2 of 12)	intron (NM_001161797, intron 2 of 12)	10587.0	NM_001161797	100169.0	Mm.158361	NM_175306	ENSMUSG00000066043	Phactr4	3110001B12Rik|AI527228|AW495572|C330013F19Rik|N28169|mKIAA4120	phosphatase and actin regulator 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83843688-3	chr11	83843185	83844185	+	861.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7184.0	NM_001291268	21410.0	Mm.7226	NM_009330	ENSMUSG00000020679	Hnf1b	HNF-1-beta|HNF-1B|HNF-1Beta|Hnf1beta|LFB3|Tcf-2|Tcf2|vHNF1	HNF1 homeobox B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-52346469-3	chr11	52345960	52346960	+	861.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14402.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60728484-2	chr10	60727984	60728984	+	861.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 3 of 5)	intron (NM_023596, intron 3 of 5)	24298.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113051490-2	chr12	113050990	113051990	+	861.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081170, intron 7 of 23)	intron (NM_001081170, intron 7 of 23)	-23012.0	NM_001361919	75671.0	Mm.23377	NM_029381	ENSMUSG00000012211	Tex22	1700028O09Rik|AV210422|Tep22	testis expressed gene 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-57252798-4	chr12	57252314	57253314	+	861.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164370, intron 1 of 9)	L1_Mur3|LINE|L1	22389.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	3.0	0.0	0.5	1.0	2.0	1.5
Merged-chr17-65681122-3	chr17	65680619	65681619	+	861.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 5 of 6)	(GGA)n|Simple_repeat|Simple_repeat	-38915.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128844738-2	chr6	128844238	128845238	+	861.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-18423.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71528770-2	chr2	71528270	71529270	+	861.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010053)	promoter-TSS (NM_010053)	-675.0	NM_010053	13390.0	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54721216-3	chr18	54720693	54721693	+	860.988892	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109449.0	NR_045400	328957.0	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA	0.0	5.5	0.0	7.5	0.5	12.0
Merged-chr13-112810515-3	chr13	112810013	112811013	+	860.966675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008903, intron 1 of 5)	MIR|SINE|MIR	9736.0	NM_008247	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	5.5	24.5	22.5	15.0	10.5	18.0
Merged-chr10-60289410-4	chr10	60288941	60289941	+	860.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146124, intron 1 of 13)	intron (NM_001146124, intron 1 of 13)	4980.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12214605-4	chr15	12214130	12215130	+	860.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356498, intron 1 of 15)	intron (NM_001356498, intron 1 of 15)	9602.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-40693677-4	chr11	40693212	40694212	+	860.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199274, intron 1 of 6)	intron (NM_001199274, intron 1 of 6)	-1030.0	NM_134017	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	15.0	31.0	28.0	15.0	31.0	28.5
Merged-chr18-33431562-3	chr18	33431069	33432069	+	860.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	32065.0	NM_001267717	27528.0	Mm.407415	NM_053078	ENSMUSG00000042834	Nrep	AI325076|D0H4S114|Harp|P311|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding	0.0	2.5	3.5	0.0	0.0	0.5
Merged-chr15-79941141-4	chr15	79940633	79941633	+	860.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-8487.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	4.0	23.0	5.5	0.0	3.0	3.5
Merged-chr11-74993250-4	chr11	74992750	74993750	+	860.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 10 of 18)	intron (NM_001002764, intron 10 of 18)	67378.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44231310-4	chr13	44230829	44231829	+	860.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14842.0	NR_045088	100503592.0	Mm.184925	NR_045088	ENSMUSG00000113186	A330076C08Rik	-	RIKEN cDNA A330076C08 gene	ncRNA	2.0	4.0	5.0	1.5	6.0	4.5
Merged-chr12-76522226-4	chr12	76521715	76522715	+	860.912476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	10997.0	NR_039597	100628604.0		NR_039597	ENSMUSG00000092738	Mir5135	mir-5135|mmu-mir-5135|mu-mir-5135	microRNA 5135	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-28688007-4	chr13	28687533	28688533	+	860.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045054, intron 3 of 7)	intron (NR_045054, intron 3 of 7)	22840.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-102867096-3	chr9	102866598	102867598	+	860.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042607, intron 2 of 14)	intron (NM_001042607, intron 2 of 14)	32178.0	NM_001284258	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34217199-3	chr19	34216732	34217732	+	860.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360719)	promoter-TSS (NM_001360719)	-276.0	NM_001360719	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	6.5	13.5	5.0	9.5	7.5	4.0
Merged-chr18-9507267-4	chr18	9506757	9507757	+	860.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57103.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0.0	3.0	0.5	0.5	0.0	0.0
Merged-chr10-128519043-4	chr10	128518540	128519540	+	860.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011843, intron 14 of 30)	intron (NM_011843, intron 14 of 30)	6819.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86484491-4	chr17	86483994	86484994	+	860.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 6 of 14)	intron (NM_011104, intron 6 of 14)	-197316.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43523645-4	chr4	43523177	43524177	+	860.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009416)	promoter-TSS (NM_009416)	-123.0	NM_001277875	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	1.0	1.0	5.0	3.5	0.0	3.5
Merged-chr10-81525238-3	chr10	81524727	81525727	+	860.833374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1002.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84238183-2	chr1	84237683	84238683	+	860.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003948, intron 1 of 2)	ORR1E|LTR|ERVL-MaLR	-19222.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101836040-2	chr5	101835540	101836540	+	860.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172882, exon 67 of 67)	3' UTR (NM_172882, exon 67 of 67)	70910.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139483121-2	chr5	139482621	139483621	+	860.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159908, intron 1 of 6)	intron (NM_001159908, intron 1 of 6)	1370.0	NM_133349	100494.0	Mm.24521	NM_133349	ENSMUSG00000053581	Zfand2a	AA407930|AU016206|Airap	zinc finger, AN1-type domain 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143731719-4	chr5	143731235	143732235	+	860.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029749, intron 1 of 17)	CpG	545.0	NM_029749	76800.0	Mm.259620	NM_029749	ENSMUSG00000051306	Usp42	2410140K03Rik|3110031A07Rik|A630018G05Rik|D5Ertd591e	ubiquitin specific peptidase 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111742471-2	chr13	111741971	111742971	+	860.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56293.0	NM_172593	218613.0	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	0.0	0.0	1.0	0.0	1.5	1.5
Merged-chr1-87281817-3	chr1	87281303	87282303	+	860.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028889, intron 1 of 3)	intron (NM_028889, intron 1 of 3)	17450.0	NR_151447	98363.0	Mm.247951	NM_028889	ENSMUSG00000026255	Efhd1	4931430I01Rik|AI452351|PP3051|mitocalcin	EF hand domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-114843793-3	chr9	114843282	114844282	+	860.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027294, exon 1 of 4)	exon (NM_027294, exon 1 of 4)	370.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-117166991-4	chr6	117166486	117167486	+	860.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1549.0	NM_001012477	20315.0	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-97128696-2	chr5	97128196	97129196	+	860.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17100.0	NM_001359913	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79850138-3	chr10	79849630	79850630	+	860.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	L1MB8|LINE|L1	-4302.0	NM_001077363	19205.0	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-19580812-3	chr4	19580280	19581280	+	860.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025476, intron 2 of 9)	B4A|SINE|B4	5714.0	NM_025476	66302.0	Mm.440686	NM_025476	ENSMUSG00000028229	Rmdn1	Fam82b|RMD-1	regulator of microtubule dynamics 1	protein-coding	9.0	3.5	4.0	2.0	3.5	1.0
Merged-chr6-114402378-2	chr6	114401878	114402878	+	860.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317126, intron 1 of 1)	intron (NM_001317126, intron 1 of 1)	-1288.0	NM_001252642	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46862890-2	chr19	46862390	46863390	+	860.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001102471, intron 4 of 6)	intron (NM_001102471, intron 4 of 6)	99461.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-33954589-4	chr5	33954085	33955085	+	860.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_B|LTR|ERVK	-18327.0	NM_011914	24116.0	Mm.332320	NM_011914	ENSMUSG00000029111	Nelfa	Whsc2|Whsc2h	negative elongation factor complex member A, Whsc2	protein-coding	0.0	0.0	0.5	0.0	2.5	0.0
Merged-chr2-75781275-4	chr2	75780738	75781738	+	860.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50939.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	3.0	13.5	19.5	2.0	9.0	3.0
Merged-chr12-85421007-4	chr12	85420523	85421523	+	860.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46306.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76230970-3	chr15	76230468	76231468	+	860.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163542, intron 1 of 33)	intron (NM_001163542, intron 1 of 33)	410.0	NM_001163542	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-56183703-1	chr3	56183203	56184203	+	860.7999880000001	f0_balb.idr	promoter-TSS (NM_030595)	promoter-TSS (NM_030595)	-2.0	NM_030595	26422.0	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95563424-4	chr9	95562930	95563930	+	860.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3613.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51636817-4	chr3	51636339	51637339	+	860.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24340.0	NM_174995	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-129501244-4	chr5	129500659	129501659	+	860.78125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172276)	promoter-TSS (NM_172276)	-72.0	NM_001359952	231769.0	Mm.288714	NM_172276	ENSMUSG00000029439	Sfswap	1190005N23Rik|6330437E22Rik|AI197402|AW212079|SWAP|Sfrs8|Srsf8	splicing factor SWAP	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-126817847-4	chr1	126817350	126818350	+	860.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176957, intron 1 of 12)	intron (NM_176957, intron 1 of 12)	12782.0	NM_176957	210356.0	Mm.377234	NM_172484	ENSMUSG00000049690	Nckap5	8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5	NCK-associated protein 5	protein-coding	0.0	4.5	0.5	0.0	0.0	0.0
Merged-chr8-75076473-4	chr8	75075930	75076930	+	860.7583619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17188.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.0	0.0	4.0	0.0	2.5	3.5
Merged-chr12-102501230-4	chr12	102500736	102501736	+	860.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	31326.0	NM_013747	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	0.0	15.0	12.5	5.0	27.0	8.0
Merged-chr7-135050940-2	chr7	135050440	135051440	+	860.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033420, intron 29 of 51)	intron (NM_001033420, intron 29 of 51)	-112510.0	NM_001143802	627214.0	Mm.323610	NM_001143802	ENSMUSG00000073805	Fam196a	B830028B13Rik	family with sequence similarity 196, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-93861428-4	chr11	93860890	93861890	+	860.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013375, intron 12 of 13)	intron (NM_001013375, intron 12 of 13)	24376.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	2.5	1.5	2.0	1.5	0.0	4.0
Merged-chr6-117908726-2	chr6	117908226	117909226	+	860.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166428, intron 1 of 3)	intron (NM_001166428, intron 1 of 3)	922.0	NM_001166429	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122189697-2	chr7	122189197	122190197	+	860.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3466.0	NM_001316689	26918.0	Mm.20452	NM_012016	ENSMUSG00000030866	Ern2	Ern1|Ire1|Ire1b|ire1-beta|mIre1	endoplasmic reticulum (ER) to nucleus signalling 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70235358-4	chr12	70234854	70235854	+	860.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7513.0	NR_045174	414124.0	Mm.416164	NR_045174	ENSMUSG00000085298	F730035M05Rik	-	RIKEN cDNA F730035M05 gene	ncRNA	6.5	4.5	5.0	0.5	2.5	2.0
Merged-chr4-101314767-4	chr4	101314275	101315275	+	860.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32252.0	NR_029537	387143.0		NR_029537	ENSMUSG00000065451	Mir101a	Mirn101|Mirn101a|miR-101|mir-101a	microRNA 101a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70213102-3	chr11	70212589	70213589	+	860.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153081)	promoter-TSS (NM_153081)	-821.0	NM_153081	216867.0	Mm.289238	NM_153081	ENSMUSG00000040938	Slc16a11	AB041591|MCT 11|MNCb-2717	solute carrier family 16 (monocarboxylic acid transporters), member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-89123590-4	chr4	89123101	89124101	+	860.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151607, intron 1 of 3)	intron (NR_151607, intron 1 of 3)	4625.0	NR_151607	102637941.0	Mm.366358	NR_151607		Gm12602	-	predicted gene 12602	ncRNA	0.0	7.5	0.0	0.0	3.5	0.5
Merged-chr4-144930494-3	chr4	144929979	144930979	+	860.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37342.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17392062-4	chr17	17391624	17392624	+	860.712524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025934, intron 9 of 9)	intron (NM_025934, intron 9 of 9)	-10562.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	56.0	184.0	75.5	51.5	101.5	73.5
Merged-chr8-61579012-4	chr8	61578539	61579539	+	860.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	12130.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	17.5	29.0	24.5	16.0	21.5	20.0
Merged-chr5-103715189-4	chr5	103714710	103715710	+	860.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-38952.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23446801-4	chr13	23446286	23447286	+	860.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15769.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38385141-5	chr18	38384642	38385642	+	860.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33765.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133092799-4	chr4	133092237	133093237	+	860.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37896.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	29.5	18.0	16.5	23.5	18.0	15.5
Merged-chr14-14347393-8	chr14	14346861	14347861	+	860.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008369, intron 2 of 11)	intron (NM_008369, intron 2 of 11)	866.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	5.5	20.0	3.5	8.5	11.5	1.5
Merged-chr13-38037956-4	chr13	38037432	38038432	+	860.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027724)	promoter-TSS (NM_027724)	943.0	NM_024242	71340.0	Mm.297130	NM_024242	ENSMUSG00000021428	Riok1	3110046C13Rik|5430416A05Rik|Ad034	RIO kinase 1	protein-coding	12.5	22.5	27.5	13.0	31.5	24.0
Merged-chr10-94381817-3	chr10	94381319	94382319	+	860.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	69870.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-24741780-3	chr12	24741271	24742271	+	860.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	33517.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	0.0	0.0	0.0	0.0	3.0	0.0
Merged-chr16-37579257-3	chr16	37578764	37579764	+	860.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013547)	promoter-TSS (NM_013547)	-889.0	NR_027778	15233.0	Mm.157442	NM_013547	ENSMUSG00000022821	Hgd	Hgo|aku	homogentisate 1, 2-dioxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-82724399-3	chr1	82723896	82724896	+	860.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310699)	promoter-TSS (NM_001310699)	-494.0	NM_001310697	75734.0	Mm.396863	NM_029409	ENSMUSG00000026150	Mff	5230400G24Rik|AI314724	mitochondrial fission factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60744289-4	chr13	60743777	60744777	+	860.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 19 of 26)	intron (NM_134062, intron 19 of 26)	42087.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117360117-2	chr11	117359617	117360617	+	860.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_017380, intron 9 of 9)	intron (NM_017380, intron 9 of 9)	27804.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141454710-3	chr4	141454211	141455211	+	860.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009541, intron 2 of 15)	intron (NM_009541, intron 2 of 15)	10038.0	NM_009541	22642.0	Mm.389590	NM_009541	ENSMUSG00000006215	Zbtb17	AA589413|Lp-1|Miz1|Zfp100|mZ13	zinc finger and BTB domain containing 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82779070-4	chr11	82778581	82779581	+	860.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_126067)	TTS (NR_126067)	1961.0	NR_126068	100503272.0	Mm.486964	NR_126067	ENSMUSG00000085175	Gm11423	-	predicted gene 11423	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97789182-4	chr15	97788682	97789682	+	860.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026353, intron 1 of 2)	intron (NM_026353, intron 1 of 2)	4817.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-77823935-3	chr1	77823468	77824468	+	860.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-308880.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-75437758-4	chr9	75437265	75438265	+	860.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3759.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	4.5	7.5	2.5	17.0	17.5	7.0
Merged-chr6-119481096-3	chr6	119480598	119481598	+	860.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133940, exon 1 of 1)	3' UTR (NM_133940, exon 1 of 1)	1430.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79339195-3	chr15	79338702	79339702	+	860.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7419.0	NM_001304830	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-68052917-4	chr18	68052383	68053383	+	860.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	119710.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123565815-3	chr4	123565323	123566323	+	860.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-50597.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-103706199-4	chr5	103705712	103706712	+	860.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47950.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70280663-4	chr11	70280179	70281179	+	860.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25309.0	NM_007440	11684.0	Mm.12286	NM_007440	ENSMUSG00000000320	Alox12	9930022G08Rik|Alox12p|P-12LO	arachidonate 12-lipoxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96350239-4	chr9	96349748	96350748	+	860.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357213, intron 1 of 7)	intron (NM_001357213, intron 1 of 7)	13467.0	NM_001357213	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	24.0	47.0	19.5	14.5	42.5	11.0
Merged-chr3-105710207-3	chr3	105709687	105710687	+	860.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163356, intron 1 of 1)	intron (NM_001163356, intron 1 of 1)	4729.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	7.0	7.0	8.0	8.5	6.0	4.5
Merged-chr9-123999947-3	chr9	123999444	124000444	+	860.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21536.0	NM_007718	12770.0	Mm.423532	NM_007718	ENSMUSG00000064039	Ccr1l1	Cmkbr1l1	chemokine (C-C motif) receptor 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173419742-3	chr1	173419231	173420231	+	860.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013779)	promoter-TSS (NM_001013779)	-873.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	65.5	160.0	88.0	31.5	101.0	65.0
Merged-chr10-112774459-3	chr10	112773963	112774963	+	860.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040579, intron 5 of 6)	L1MEf|LINE|L1	47537.0	NR_040579	69355.0	Mm.84337	NR_040579	ENSMUSG00000100314	1700010J16Rik	-	RIKEN cDNA 1700010J16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-131552791-3	chr3	131552246	131553246	+	860.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12022.0	NM_001289479	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127532787-2	chr10	127532287	127533287	+	860.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_183297, intron 1 of 1)	intron (NM_183297, intron 1 of 1)	1772.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	5.0	0.5	0.5	5.0	0.5	0.5
Merged-chr16-55823272-2	chr16	55822772	55823772	+	860.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_030612, intron 2 of 13)	intron (NM_030612, intron 2 of 13)	-1134.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75838177-3	chr10	75837694	75838694	+	860.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3313.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80757923-3	chr10	80757399	80758399	+	860.577759	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199322, intron 1 of 27)	intron (NM_199322, intron 1 of 27)	2696.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42177172-3	chr19	42176652	42177652	+	860.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164531, intron 2 of 11)	intron (NM_001164531, intron 2 of 11)	6585.0	NM_001164531	319740.0	Mm.287359	NM_177319	ENSMUSG00000018820	Zfyve27	2210011N02Rik|9530077C24Rik|AI426636|AI593546|AI835681	zinc finger, FYVE domain containing 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76381020-4	chr15	76380586	76381586	+	860.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175457, intron 1 of 43)	CpG	573.0	NM_175457	223658.0	Mm.123240	NM_175457	ENSMUSG00000022558	Mroh1	D330001F17Rik|Heatr7a	maestro heat-like repeat family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9911464-6	chr19	9910961	9911961	+	860.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11928.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-85134390-4	chr16	85133892	85134892	+	860.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	39315.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	2.0	3.0	4.0	0.0	3.0	3.0
Merged-chr7-133032714-4	chr7	133032212	133033212	+	860.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	-17465.0	NM_001170744	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142094436-5	chr7	142093985	142094985	+	860.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008748, intron 1 of 6)	CpG	799.0	NM_008748	18218.0	Mm.39725	NM_008748	ENSMUSG00000037887	Dusp8	5530400B01Rik|AI593498|Nttp1	dual specificity phosphatase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128741204-2	chr7	128740704	128741704	+	860.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145955)	promoter-TSS (NM_145955)	-775.0	NM_145955	210711.0	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167947535-2	chr2	167947035	167948035	+	860.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	15208.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129462569-2	chr4	129462069	129463069	+	860.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133889, intron 2 of 10)	intron (NM_133889, intron 2 of 10)	890.0	NM_133889	100383.0	Mm.17918	NM_133889	ENSMUSG00000040859	Bsdc1	1110063F24Rik|AW011758	BSD domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24853358-2	chr13	24852858	24853858	+	860.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081051, intron 1 of 20)	MTC|LTR|ERVL-MaLR	8227.0	NR_131787	210108.0	Mm.261514	NM_001081051	ENSMUSG00000006711	D130043K22Rik	4930451E12Rik|Kiaa0319	RIKEN cDNA D130043K22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8520723-4	chr12	8520212	8521212	+	860.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18854.0	NM_001038660	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	109.0	335.5	243.0	108.0	343.5	221.5
Merged-chr15-99025530-2	chr15	99025030	99026030	+	860.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4361.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17882757-2	chr12	17882257	17883257	+	860.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	191948.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	11.0	7.5	7.5	0.0	19.5	4.0
Merged-chr11-21220020-2	chr11	21219520	21220520	+	860.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19012.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0.5	0.0	0.0	1.0	1.5	0.0
Merged-chr7-105639405-2	chr7	105638905	105639905	+	860.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029802, exon 2 of 8)	exon (NM_029802, exon 2 of 8)	1011.0	NM_029802	76932.0	Mm.41637	NM_029802	ENSMUSG00000030881	Arfip2	2310002N04Rik|POR|Por1	ADP-ribosylation factor interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-90878261-2	chr8	90877761	90878761	+	860.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	(TAAA)n|Simple_repeat|Simple_repeat	49426.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	63.0	129.5	84.5	68.5	146.5	91.0
Merged-chr17-78688037-2	chr17	78687574	78688574	+	860.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011500, intron 3 of 17)	intron (NM_011500, intron 3 of 17)	48486.0	NM_011500	268980.0	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	43.5	103.5	50.5	24.5	46.0	37.0
Merged-chr3-116109527-1	chr3	116109027	116110027	+	860.5	f0_balb.idr	TTS (NM_011693)	TTS (NM_011693)	20161.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	14.5	40.0	5.5	17.5	21.0	19.5
Merged-chr13-49959138-2	chr13	49958638	49959638	+	860.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	277008.0	NM_172015	105148.0	Mm.21118	NM_172015	ENSMUSG00000037851	Iars	2510016L12Rik|AI327140|AU044614|E430001P04Rik|ILRS	isoleucine-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-56088696-2	chr1	56088196	56089196	+	860.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69718.0	NR_126076	69356.0	Mm.393775	NR_126075	ENSMUSG00000100372	1700003I22Rik	-	RIKEN cDNA 1700003I22 gene	ncRNA	7.0	8.0	3.5	7.0	8.0	3.5
Merged-chr14-122663868-2	chr14	122663368	122664368	+	860.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 10 of 24)	intron (NR_153443, intron 10 of 24)	129540.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95825346-2	chr15	95824846	95825846	+	860.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_155276, intron 1 of 1)	intron (NR_155276, intron 1 of 1)	4726.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-26587285-2	chr11	26586785	26587785	+	860.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027260, intron 2 of 12)	intron (NM_027260, intron 2 of 12)	6635.0	NM_027260	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	44.0	87.5	84.0	54.0	84.0	66.5
Merged-chr18-84847310-2	chr18	84846810	84847810	+	860.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4028.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44839479-2	chr7	44838979	44839979	+	860.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171024, intron 8 of 8)	intron (NM_001171024, intron 8 of 8)	3191.0	NM_010215	14204.0	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	2.0	0.0	0.0	0.0	0.0	0.5
Merged-chr11-109422265-2	chr11	109421765	109422765	+	860.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3681.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	1.0	0.0	0.0	3.0	0.0	0.0
Merged-chr14-69238392-4	chr14	69237876	69238876	+	860.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46727.0	NM_026331	67712.0	Mm.293635	NM_026331	ENSMUSG00000034248	Slc25a37	1700020E22Rik|4930513O14Rik|4930526G11Rik|AI848481|C330015G08Rik|Mfrn|Mfrn1|Mscp|frascati|mitoferrin	solute carrier family 25, member 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151927562-3	chr1	151927104	151928104	+	860.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 3 of 5)	B1_Mur1|SINE|Alu	162716.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-52331825-2	chr10	52331325	52332325	+	860.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	50299.0	NM_053187	94221.0	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64035979-1	chr1	64035479	64036479	+	860.5	f0_balb.idr	intron (NM_033563, intron 3 of 3)	intron (NM_033563, intron 3 of 3)	6522.0	NR_105864	102466760.0		NR_105864	ENSMUSG00000098487	Mir6899	Gm27384|mmu-mir-6899	microRNA 6899	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69093702-2	chr11	69093202	69094202	+	860.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	5174.0	NM_009497	22318.0	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|Vamp-2|sybII	vesicle-associated membrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24413004-2	chr16	24412504	24413504	+	860.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 1 of 12)	intron (NM_178665, intron 1 of 12)	-19349.0	NR_037954	68841.0	Mm.361995	NR_037954		Lppos	1110054M08Rik|AI481106	LIM domain containing preferred translocation partner in lipoma, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164950445-2	chr2	164949939	164950939	+	860.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013599, exon 6 of 13)	exon (NM_013599, exon 6 of 13)	2220.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	4.5	0.0	0.0	0.0	1.0	4.0
Merged-chr14-119542304-2	chr14	119541804	119542804	+	860.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015820, intron 1 of 1)	ORR1D1|LTR|ERVL-MaLR	-206923.0	NR_045621	75432.0	Mm.443277	NR_045621	ENSMUSG00000100274	1700006F04Rik	-	RIKEN cDNA 1700006F04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60938501-2	chr11	60938001	60939001	+	860.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008928, intron 1 of 11)	intron (NM_008928, intron 1 of 11)	6444.0	NM_008928	26397.0	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59146261-4	chr15	59145758	59146758	+	860.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64232.0	NM_144800	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0.5	11.0	2.0	0.5	11.0	2.0
Merged-chr6-72940659-3	chr6	72940158	72941158	+	860.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17574.0	NM_001039392	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	2.5	1.0	0.0	2.0	0.0	0.0
Merged-chr12-5223604-4	chr12	5223146	5224146	+	860.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164493, intron 2 of 13)	intron (NM_001164493, intron 2 of 13)	152036.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5939451-2	chr17	5938951	5939951	+	860.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1829.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47771878-2	chr6	47771378	47772378	+	860.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18953.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45086389-2	chr13	45085889	45086889	+	860.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-84293.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101269647-2	chr15	101269147	101270147	+	860.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010444, intron 1 of 6)	intron (NM_010444, intron 1 of 6)	2801.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105159025-2	chr4	105158525	105159525	+	860.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 1 of 5)	intron (NM_080555, intron 1 of 5)	1678.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	2.5	4.0	2.0	2.5	3.5	2.0
Merged-chr18-39185829-3	chr18	39185351	39186351	+	860.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 11 of 21)	intron (NM_001361073, intron 11 of 21)	192706.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0.0	4.0	3.5	1.0	0.5	0.0
Merged-chr1-152618073-4	chr1	152617560	152618560	+	860.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	7157.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79814022-4	chr3	79813546	79814546	+	860.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027495, exon 12 of 12)	3' UTR (NM_027495, exon 12 of 12)	28616.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	1.5	0.0	0.0	0.0	0.0	0.5
Merged-chr9-121669610-2	chr9	121669078	121670078	+	860.458374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011703, exon 13 of 13)	3' UTR (NM_011703, exon 13 of 13)	26862.0	NM_011703	22354.0	Mm.282007	NM_011703	ENSMUSG00000032528	Vipr1	AV071699|VIP-R1|VPAC1	vasoactive intestinal peptide receptor 1	protein-coding	0.0	0.0	0.0	2.0	0.0	0.5
Merged-chr1-91095523-4	chr1	91095021	91096021	+	860.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 10 of 22)	intron (NM_008515, intron 10 of 22)	42077.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149954300-4	chr4	149953808	149954808	+	860.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029035, intron 1 of 2)	CpG	698.0	NM_029035	74646.0	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	10.0	21.0	17.5	9.5	10.0	19.0
Merged-chr5-64933611-4	chr5	64933095	64934095	+	860.4541630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276445)	promoter-TSS (NM_001276445)	-37.0	NM_001276445	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	16.0	10.5	12.5	13.5	6.0	9.0
Merged-chr7-100853519-4	chr7	100852988	100853988	+	860.4464109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177073, intron 1 of 10)	intron (NM_177073, intron 1 of 10)	9925.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72321495-3	chr8	72321001	72322001	+	860.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008452, exon 3 of 3)	3' UTR (NM_008452, exon 3 of 3)	2439.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	86.5	216.0	149.0	60.0	167.5	121.0
Merged-chr11-69323282-3	chr11	69322767	69323767	+	860.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024206)	promoter-TSS (NM_001024206)	606.0	NM_172560	216846.0	Mm.28774	NM_172560	ENSMUSG00000032782	Cntrob	9830165K03Rik|Lip8|Nip2	centrobin, centrosomal BRCA2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101159599-4	chr4	101159092	101160092	+	860.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 17 of 24)	intron (NM_146145, intron 17 of 24)	90554.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24610722-4	chr7	24610224	24611224	+	860.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102613)	promoter-TSS (NM_001102613)	-604.0	NM_001102613	232970.0	Mm.333663	NM_001102613	ENSMUSG00000074277	Phldb3	EG232970|Gm10102	pleckstrin homology like domain, family B, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-22143438-4	chr3	22142901	22143901	+	860.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	66749.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61324294-3	chr18	61323758	61324758	+	860.4166869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133249, intron 1 of 11)	intron (NM_133249, intron 1 of 11)	73642.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	1.5	9.0	8.0	2.0	5.5	9.0
Merged-chr4-129577283-2	chr4	129576783	129577783	+	860.4166869999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_182783, exon 2 of 2)	exon (NM_182783, exon 2 of 2)	1297.0	NM_182783	230766.0	Mm.20377	NM_182783	ENSMUSG00000050493	Fam167b	SEC	family with sequence similarity 167, member B	protein-coding	5.0	0.5	6.5	3.0	12.0	6.0
Merged-chr14-33158475-4	chr14	33158001	33159001	+	860.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146022, intron 2 of 58)	intron (NM_001146022, intron 2 of 58)	26565.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47528661-4	chr9	47528158	47529158	+	860.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1512.0	NM_001310841	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	2.0	14.5	9.5	3.0	10.5	8.0
Merged-chr13-29431099-3	chr13	29430614	29431614	+	860.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131896, intron 13 of 16)	intron (NR_131896, intron 13 of 16)	414859.0	NR_045075	77920.0	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107432320-4	chr11	107431832	107432832	+	860.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	38388.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	1.0	2.0	5.5	1.0	3.0	5.5
Merged-chr11-6524605-4	chr11	6524102	6525102	+	860.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045893)	TTS (NR_045893)	-3644.0	NM_178440	246177.0	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143466259-4	chr5	143465873	143466873	+	860.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 1 of 14)	ID_B1|SINE|B4	1880.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154910803-4	chr4	154910299	154911299	+	860.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12|LTR|ERVK	-11756.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	26.0	35.5	19.0	22.5	32.5	14.5
Merged-chr1-88226655-2	chr1	88226155	88227155	+	860.375	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281466)	promoter-TSS (NM_001281466)	-365.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150272888-2	chr4	150272380	150273380	+	860.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	AmnSINE1|SINE|Deu	-9036.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	2.5	3.5	3.5	9.0	1.0	7.5
Merged-chr12-82259331-2	chr12	82258831	82259831	+	860.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 2 of 23)	RSINE1|SINE|B4	-52018.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50373821-2	chr16	50373321	50374321	+	860.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 2 of 16)	intron (NM_027444, intron 2 of 16)	58568.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32191766-2	chr16	32191266	32192266	+	860.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11966.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103840601-3	chr14	103840054	103841054	+	860.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276296, intron 1 of 7)	intron (NM_001276296, intron 1 of 7)	3147.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89449023-3	chr3	89448501	89449501	+	860.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_146131, exon 11 of 11)	3' UTR (NM_146131, exon 11 of 11)	-5540.0	NM_001310640	68603.0	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31118261-3	chr17	31117730	31118730	+	860.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009593)	TTS (NM_009593)	11381.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	0.0	1.5	7.5	0.0	2.0	0.5
Merged-chr6-43304016-3	chr6	43303528	43304528	+	860.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_130869, exon 9 of 9)	exon (NM_130869, exon 9 of 9)	5526.0	NM_130869	18291.0	Mm.17715	NM_130869	ENSMUSG00000029736	Nobox	OG2|Og2x	NOBOX oogenesis homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4059894-3	chr19	4059427	4060427	+	860.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362043)	promoter-TSS (NM_001362043)	-480.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115630630-3	chr11	115630132	115631132	+	860.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-2337.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-85027435-3	chr2	85026952	85027952	+	860.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145526, intron 1 of 11)	intron (NM_145526, intron 1 of 11)	8382.0	NM_145526	228139.0	Mm.440375	NM_145526	ENSMUSG00000027071	P2rx3	4930513E20Rik|P2X3	purinergic receptor P2X, ligand-gated ion channel, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33870522-4	chr2	33870005	33871005	+	860.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 2 of 9)	intron (NM_175184, intron 2 of 9)	17441.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11006100-6	chr8	11005700	11006700	+	860.2999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081212, exon 1 of 2)	exon (NM_001081212, exon 1 of 2)	-1650.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120243392-4	chr14	120242908	120243908	+	860.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32261.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-75038148-4	chr9	75037697	75038697	+	860.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152135, intron 2 of 4)	intron (NR_152135, intron 2 of 4)	465.0	NM_021548	59046.0	Mm.247837	NM_021548	ENSMUSG00000007656	Arpp19	19kDa|2700024H10Rik|ARPP-19|AW559096|Arpp12	cAMP-regulated phosphoprotein 19	protein-coding	2.0	6.5	0.5	0.0	2.5	0.0
Merged-chr6-145304703-3	chr6	145304188	145305188	+	860.288879	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54136.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	240.5	652.5	467.0	100.0	356.5	216.5
Merged-chr17-66110863-3	chr17	66110361	66111361	+	860.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037757)	promoter-TSS (NM_001037757)	-685.0	NM_026833	68767.0	Mm.296545	NM_026833	ENSMUSG00000024101	Washc1	1110049F14Rik|ORF19|Wash|Wash1	WASH complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88608252-2	chr3	88607752	88608752	+	860.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7955.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	3.5	14.5	1.5	5.5	6.5	8.0
Merged-chr1-24481804-4	chr1	24481305	24482305	+	860.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007733, intron 11 of 50)	intron (NM_007733, intron 11 of 50)	105632.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	13.5	18.5	6.5	18.0	2.5	9.5
Merged-chr11-34737417-4	chr11	34736908	34737908	+	860.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 2 of 51)	L1M3|LINE|L1	46497.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45922710-3	chr13	45922210	45923210	+	860.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	42281.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17640952-4	chr6	17640461	17641461	+	860.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007604, intron 1 of 9)	intron (NM_007604, intron 1 of 9)	3951.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	9.0	15.5	18.5	1.5	14.5	1.0
Merged-chr10-86992615-2	chr10	86992115	86993115	+	860.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 3 of 68)	intron (NM_138673, intron 3 of 68)	15327.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-23109386-4	chr8	23108891	23109891	+	860.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102385, intron 21 of 45)	intron (NR_102385, intron 21 of 45)	-29639.0	NM_001310436	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51817255-2	chr11	51816755	51817755	+	860.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_199299, exon 12 of 12)	exon (NM_199299, exon 12 of 12)	40226.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120958365-2	chr6	120957865	120958865	+	860.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_138099)	promoter-TSS (NR_138099)	-479.0	NR_138099	215458.0	Mm.122399	NR_138099		LOC215458	-	uncharacterized LOC215458	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-48913803-4	chr11	48913307	48914307	+	860.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045540, intron 2 of 2)	intron (NM_001045540, intron 2 of 2)	-11655.0	NM_001024230	432555.0	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-41522958-4	chr3	41522447	41523447	+	860.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_130791, exon 2 of 6)	non-coding (NR_130791, exon 2 of 6)	5527.0	NR_130791	78648.0	Mm.366093	NR_130791		2400006E01Rik	Gm43733|lncRNA-JADE	RIKEN cDNA 2400006E01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102231964-2	chr15	102231464	102232464	+	860.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013566)	promoter-TSS (NM_013566)	-29.0	NM_013566	16421.0	Mm.58	NM_013566	ENSMUSG00000001281	Itgb7	Ly69	integrin beta 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9096656-2	chr13	9096156	9097156	+	860.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 1 of 17)	intron (NM_172585, intron 1 of 17)	2775.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-109485044-4	chr14	109484589	109485589	+	860.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-570850.0	NM_199065	76965.0	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-60542579-3	chr3	60542053	60543053	+	860.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	41374.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	21.5	7.0	5.0	7.5	8.5	3.0
Merged-chr10-125745043-5	chr10	125744535	125745535	+	860.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-221184.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	0.0	2.0	4.0	1.5	10.5	7.5
Merged-chr1-153543678-3	chr1	153543179	153544179	+	860.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028749, intron 2 of 11)	intron (NM_028749, intron 2 of 11)	6035.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96264008-3	chr3	96263528	96264528	+	860.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033596)	promoter-TSS (NM_033596)	-711.0	NM_033596	97122.0	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	2.0	40.0	14.5	1.5	11.0	9.0
Merged-chr18-53247902-2	chr18	53247402	53248402	+	860.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	PB1D7|SINE|Alu	2240.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138999076-2	chr5	138998576	138999576	+	860.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4123.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65525894-6	chr9	65525425	65526425	+	860.1555179999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54162.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120575892-6	chr8	120575313	120576313	+	860.138916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 13 of 15)	intron (NM_001145896, intron 13 of 15)	13262.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112473823-5	chr13	112473407	112474407	+	860.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010560, intron 2 of 16)	intron (NM_010560, intron 2 of 16)	9837.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75499506-4	chr10	75499010	75500010	+	860.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17871.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81594394-4	chr15	81593909	81594909	+	860.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177821, intron 1 of 30)	intron (NM_177821, intron 1 of 30)	8195.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151215033-2	chr1	151214533	151215533	+	860.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76999.0	NR_038011	402734.0	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-133050820-4	chr7	133050316	133051316	+	860.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	31044.0	NM_001347623	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36500000-4	chr15	36499495	36500495	+	860.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3204.0	NM_175134	68839.0	Mm.396537	NM_175134	ENSMUSG00000048307	Ankrd46	1110054N06Rik|AI314978|AI987733	ankyrin repeat domain 46	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58720941-4	chr1	58720428	58721428	+	860.1166380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	7642.0	NM_001355056	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118680176-2	chr9	118679651	118680651	+	860.1142580000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 11 of 27)	intron (NM_133721, intron 11 of 27)	-31541.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	14.5	18.0	20.5	12.5	20.5	13.5
Merged-chr14-122852926-3	chr14	122852414	122853414	+	860.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 22 of 24)	intron (NR_153443, intron 22 of 24)	-60116.0	NR_155287	105245866.0	Mm.390754	NM_001039531	ENSMUSG00000075463	Gm15735	4930594M22Rik|F930011C10Rik	predicted gene 15735	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84656361-3	chr3	84655883	84656883	+	860.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9809.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108990041-6	chr9	108989413	108990413	+	860.111145	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1989.0	NM_173019	270198.0	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85602046-3	chr12	85601521	85602521	+	860.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 1 of 3)	intron (NM_001205053, intron 1 of 3)	2003.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78859916-4	chr15	78859373	78860373	+	860.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4344.0	NM_025622	107753.0	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	29.0	43.5	38.5	27.0	43.5	44.0
Merged-chr11-107011846-4	chr11	107011345	107012345	+	860.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-12320.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	6.5	8.5	6.5	2.0	0.0	4.5
Merged-chr13-51756775-3	chr13	51756276	51757276	+	860.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281880, intron 2 of 16)	intron (NM_001281880, intron 2 of 16)	36971.0	NM_001281880	20354.0	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-142041782-2	chr4	142041282	142042282	+	860.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	23884.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5714901-2	chr13	5714401	5715401	+	860.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143191.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5945188-4	chr19	5944671	5945671	+	860.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 13 of 17)	intron (NM_001164057, intron 13 of 17)	19035.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	5.5	11.5	3.5	3.0	2.0	13.0
Merged-chr18-52768495-6	chr18	52768037	52769037	+	860.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199154, intron 1 of 10)	CpG	393.0	NM_001199154	67847.0	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-37575528-2	chr16	37575028	37576028	+	860.0833130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4625.0	NR_027778	15233.0	Mm.157442	NM_013547	ENSMUSG00000022821	Hgd	Hgo|aku	homogentisate 1, 2-dioxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-67060241-3	chr6	67059752	67060752	+	860.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040278, intron 1 of 6)	intron (NR_040278, intron 1 of 6)	-22845.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-52168763-5	chr9	52168188	52169188	+	860.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162921)	promoter-TSS (NM_001162921)	-577.0	NM_001162921	244871.0	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	0.0	8.0	0.0	0.0	1.0	0.0
Merged-chr5-136186934-4	chr5	136186436	136187436	+	860.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025774, intron 5 of 5)	intron (NM_025774, intron 5 of 5)	12018.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-13526081-4	chr13	13525601	13526601	+	860.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64308.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58257017-2	chr15	58256517	58257517	+	860.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42125.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34343926-1	chr17	34343426	34344426	+	860.0	f1_balb.idr	intron (NM_010381, intron 1 of 3)	intron (NM_010381, intron 1 of 3)	719.0	NM_010381	100504404.0	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	5.5	2.5	0.0	2.0	18.5	7.5
Merged-chr4-133701212-4	chr4	133700718	133701718	+	860.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080819, intron 4 of 19)	intron (NM_001080819, intron 4 of 19)	15890.0	NR_106086	102465707.0		NR_106086	ENSMUSG00000104566	Mir7227	mmu-mir-7227	microRNA 7227	ncRNA	0.5	3.0	10.5	7.5	6.5	13.5
Merged-chr17-15375242-2	chr17	15374742	15375742	+	860.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007865, exon 1 of 11)	5' UTR (NM_007865, exon 1 of 11)	581.0	NM_007865	13388.0	Mm.4875	NM_007865	ENSMUSG00000014773	Dll1	Delta1	delta like canonical Notch ligand 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-112233602-1	chr7	112233102	112234102	+	860.0	f0_balb.idr	intron (NM_001193305, intron 1 of 25)	intron (NM_001193305, intron 1 of 25)	7766.0	NM_001193305	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr11-116368305-3	chr11	116367811	116368811	+	860.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027258, intron 2 of 18)	intron (NM_027258, intron 2 of 18)	-32957.0	NM_008240	15223.0	Mm.378938	NM_008240	ENSMUSG00000034227	Foxj1	FKHL-13|HFH-4|Hfh4	forkhead box J1	protein-coding	1.0	1.0	0.0	0.0	0.0	0.0
Merged-chr1-85344975-1	chr1	85344475	85345475	+	860.0	f1_balb.idr	Intergenic	Intergenic	-74409.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142456490-2	chr5	142455990	142456990	+	860.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_199068, exon 9 of 9)	exon (NM_199068, exon 9 of 9)	-7441.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78434935-2	chr17	78434435	78435435	+	860.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	-16783.0	NM_001285940	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152605702-1	chr1	152605202	152606202	+	860.0	f0_balb.idr	intron (NM_001346119, intron 2 of 17)	B4A|SINE|B4	19515.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59262752-2	chr10	59262252	59263252	+	860.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40830.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45967715-3	chr13	45967223	45968223	+	860.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2732.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-115828972-2	chr4	115828488	115829488	+	860.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175308, intron 1 of 3)	intron (NM_175308, intron 1 of 3)	896.0	NM_175308	100465.0	Mm.35571	NM_175308	ENSMUSG00000028709	Mob3c	AW822253|D130076I06Rik|Mobkl2c	MOB kinase activator 3C	protein-coding	10.0	14.5	12.0	5.5	15.5	10.0
Merged-chr9-56076084-4	chr9	56075586	56076586	+	860.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13890.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133625019-3	chr4	133624490	133625490	+	860.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017968, intron 2 of 7)	intron (NM_001017968, intron 2 of 7)	8439.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	20.0	3.5	8.0	14.0	22.0	22.5
Merged-chr11-76611059-3	chr11	76610557	76611557	+	860.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33318.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85604362-1	chr1	85603862	85604862	+	860.0	f1_balb.idr	promoter-TSS (NM_175397)	promoter-TSS (NM_175397)	-471.0	NM_175397	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-89455647-4	chr1	89455154	89456154	+	860.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	CpG	843.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6777476-2	chr17	6776976	6777976	+	860.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 1 of 12)	intron (NM_009510, intron 1 of 12)	5304.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-101600051-1	chr3	101599551	101600551	+	860.0	f0_c57.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	4656.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	24.0	37.5	18.5	17.5	60.0	13.5
Merged-chr15-83021443-3	chr15	83020972	83021972	+	860.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271411, intron 1 of 5)	intron (NM_001271411, intron 1 of 5)	1666.0	NM_028728	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	7.5	5.0	9.0	4.5	2.0	0.0
Merged-chr14-75022708-2	chr14	75022208	75023208	+	860.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198642, intron 1 of 13)	intron (NM_198642, intron 1 of 13)	6681.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34076006-3	chr13	34075519	34076519	+	860.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009450, intron 3 of 3)	intron (NM_009450, intron 3 of 3)	1989.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122888722-2	chr10	122888222	122889222	+	860.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 6 of 9)	RLTR17B_Mm|LTR|ERVK	97002.0	NR_029527	387251.0		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-92484421-3	chr2	92483934	92484934	+	860.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23916.0	NM_145832	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8838630-2	chr19	8838130	8839130	+	860.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008144)	promoter-TSS (NM_008144)	616.0	NM_010316	14704.0	Mm.329700	NM_010316	ENSMUSG00000071658	Gng3	-	guanine nucleotide binding protein (G protein), gamma 3	protein-coding	1.5	2.0	0.5	1.5	2.0	1.5
Merged-chr5-117147707-1	chr5	117147207	117148207	+	860.0	f1_balb.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	14119.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	13.0	20.5	10.5	20.0	40.0	32.5
Merged-chr4-9115568-2	chr4	9115068	9116068	+	860.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-153725.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135811468-3	chr1	135810953	135811953	+	860.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001112702)	TTS (NM_001112702)	-7145.0	NM_133664	16763.0	Mm.36726	NM_133664	ENSMUSG00000041782	Lad1	LADA|lad-1	ladinin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-105125800-2	chr11	105125300	105126300	+	860.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172567)	promoter-TSS (NM_172567)	-625.0	NM_172567	52686.0	Mm.270091	NM_172567	ENSMUSG00000020691	Mettl2	2810438F06Rik|AW493404|C130031G21Rik|D11Ertd768e|METL|PSENIP1	methyltransferase like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124095360-3	chr5	124094845	124095845	+	860.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019875, intron 1 of 11)	intron (NM_019875, intron 1 of 11)	453.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39580167-2	chr1	39579667	39580667	+	860.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-2820.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101904225-2	chr7	101903725	101904725	+	860.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282088)	promoter-TSS (NM_001282088)	-440.0	NM_001282088	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33432336-3	chr2	33431826	33432826	+	860.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1002.0	NM_001276332	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-144899847-2	chr4	144899347	144900347	+	860.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	6710.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64032031-2	chr9	64031531	64032531	+	860.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	9434.0	NR_040726	73397.0	Mm.48745	NR_040726	ENSMUSG00000093616	1700055C04Rik	-	RIKEN cDNA 1700055C04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24841199-3	chr5	24840648	24841648	+	860.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053075, intron 1 of 7)	intron (NM_053075, intron 1 of 7)	1213.0	NM_053075	19744.0	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-45889200-2	chr1	45888700	45889700	+	860.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36394.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107573352-2	chr9	107572858	107573858	+	860.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010489)	TTS (NM_010489)	-3569.0	NM_008317	15586.0	Mm.475658	NM_008317	ENSMUSG00000010051	Hyal1	Hya1|Hyal-1	hyaluronoglucosaminidase 1	protein-coding	13.5	14.5	10.5	11.5	6.5	6.5
Merged-chr11-96961265-1	chr11	96960765	96961765	+	860.0	f1_balb.idr	exon (NM_001080964, exon 3 of 7)	exon (NM_001080964, exon 3 of 7)	16423.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0.0	4.0	1.0	0.5	0.0	0.0
Merged-chr7-84188402-4	chr7	84187912	84188912	+	860.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36519.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44837739-2	chr7	44837330	44838330	+	860.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171024, intron 5 of 8)	intron (NM_001171024, intron 5 of 8)	1542.0	NM_010215	14204.0	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	10.0	10.0	0.0	2.5	3.0	7.0
Merged-chr5-121712422-4	chr5	121711918	121712918	+	860.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009125, intron 1 of 24)	CpG	809.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-47712795-2	chr8	47712295	47713295	+	860.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359133, intron 2 of 2)	intron (NM_001359133, intron 2 of 2)	1136.0	NM_001359133	70925.0	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63500158-3	chr9	63499640	63500640	+	860.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030068, intron 14 of 21)	intron (NM_030068, intron 14 of 21)	-100896.0	NM_027090	69478.0	Mm.113942	NM_027090	ENSMUSG00000032403	2300009A05Rik	-	RIKEN cDNA 2300009A05 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-77905181-2	chr2	77904681	77905681	+	860.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030560, intron 18 of 20)	intron (NM_030560, intron 18 of 20)	41175.0	NM_001290740	80744.0	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118493406-2	chr7	118492906	118493906	+	860.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-1431.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	0.0	4.0	3.0	3.0	3.0	0.0
Merged-chr17-33827050-3	chr17	33826553	33827553	+	860.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_103515)	TTS (NR_103515)	2408.0	NR_103514	66416.0	Mm.29513	NM_023202	ENSMUSG00000041881	Ndufa7	14.5kDa|2400007M02Rik|CI-B14.5a	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a)	protein-coding	9.0	5.0	1.0	14.0	9.0	7.5
Merged-chr2-60200864-2	chr2	60200364	60201364	+	860.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-9072.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-5600343-4	chr10	5599811	5600811	+	859.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026793, intron 1 of 1)	intron (NM_026793, intron 1 of 1)	6583.0	NM_026793	68632.0	Mm.338242	NM_026793	ENSMUSG00000046916	Myct1	1110020B04Rik|AI225941|AI642973|Mtmc1	myc target 1	protein-coding	1.5	6.0	3.0	0.0	0.0	2.0
Merged-chr1-36815292-3	chr1	36814788	36815788	+	859.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 25 of 40)	intron (NM_018872, intron 25 of 40)	36304.0	NM_001289612	22637.0	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94245590-4	chr16	94245090	94246090	+	859.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 5 of 10)	intron (NM_001360045, intron 5 of 10)	44701.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58179766-4	chr11	58179263	58180263	+	859.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175001)	TTS (NM_175001)	-4080.0	NM_001135115	631323.0	Mm.394103	NM_001135115		Gm12250	Irgb10	predicted gene 12250	protein-coding	24.5	9.0	11.5	10.5	9.0	6.0
Merged-chr5-150155656-4	chr5	150155160	150156160	+	859.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104270.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8433607-6	chr15	8433170	8434170	+	859.952759	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201232, intron 1 of 45)	intron (NM_201232, intron 1 of 45)	10793.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-21733737-5	chr17	21733249	21734249	+	859.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164676)	promoter-TSS (NM_001164676)	25.0	NM_001164676	381067.0	Mm.482723	NM_001164676	ENSMUSG00000061544	Zfp229	-	zinc finger protein 229	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50107405-6	chr11	50106839	50107839	+	859.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 7 of 7)	intron (NM_001290750, intron 7 of 7)	-24021.0	NM_001290759	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-82871598-4	chr9	82871111	82872111	+	859.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081216, exon 40 of 40)	exon (NM_001081216, exon 40 of 40)	41805.0	NM_001168240	65099.0	Mm.41415	NM_022986	ENSMUSG00000032251	Irak1bp1	4921528N06Rik|AI851240|Aabp3|Aip70|Simpl	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-37592548-4	chr6	37592050	37593050	+	859.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62377.0	NM_145364	208665.0	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-82771441-4	chr1	82770943	82771943	+	859.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2987.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38506695-4	chr6	38506186	38507186	+	859.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106130)	promoter-TSS (NR_106130)	-639.0	NR_106130	102466843.0		NR_106130	ENSMUSG00000098285	Mir7670	Gm27707|mmu-mir-7670	microRNA 7670	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8928965-4	chr3	8928466	8929466	+	859.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001025261, exon 8 of 8)	3' UTR (NM_001025261, exon 8 of 8)	-5109.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8061908-3	chr10	8061397	8062397	+	859.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105774.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	7.5	10.0	17.5	1.0	1.0	4.0
Merged-chr7-80787530-3	chr7	80787014	80788014	+	859.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	LTRIS_Mus|LTR|ERV1	15817.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	10.5	23.5	19.5	6.0	34.0	23.5
Merged-chr1-172552925-3	chr1	172552412	172553412	+	859.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-2106.0	NR_040558	71319.0	Mm.123774	NR_040558	ENSMUSG00000085184	4933439K11Rik	-	RIKEN cDNA 4933439K11 gene	ncRNA	5.0	16.5	6.0	0.0	0.0	2.0
Merged-chr5-35595905-3	chr5	35595406	35596406	+	859.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030721, intron 8 of 18)	intron (NM_030721, intron 8 of 18)	-7143.0	NR_045807	74364.0	Mm.473123	NM_175208	ENSMUSG00000055061	4931431C16Rik	-	RIKEN cDNA 4931431C16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49906325-4	chr16	49905801	49906801	+	859.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 8 of 9)	intron (NM_010581, intron 8 of 9)	-49529.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127251841-4	chr2	127251347	127252347	+	859.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175145, intron 2 of 3)	intron (NM_175145, intron 2 of 3)	3872.0	NM_175145	69470.0	Mm.200889	NM_175145	ENSMUSG00000034850	Tmem127	2310003P10Rik|AI314202|AI317350	transmembrane protein 127	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88830284-4	chr6	88829788	88830788	+	859.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11647.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136642401-3	chr5	136641909	136642909	+	859.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50737.0	NM_001303019	59310.0	Mm.5178	NM_021611	ENSMUSG00000005474	Myl10	1700027I08Rik|Mylc2pl|PLRLC	myosin, light chain 10, regulatory	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127293099-2	chr10	127292599	127293599	+	859.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290183, intron 1 of 2)	intron (NM_001290183, intron 1 of 2)	2306.0	NM_001290183	13198.0	Mm.110220	NM_007837	ENSMUSG00000025408	Ddit3	CHOP-10|CHOP10|chop|gadd153	DNA-damage inducible transcript 3	protein-coding	0.0	0.0	1.5	0.0	0.0	5.0
Merged-chr7-90280664-2	chr7	90280163	90281163	+	859.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15231.0	NR_111924	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	3.5	3.0	2.0	1.0	2.0	0.0
Merged-chr16-76040946-2	chr16	76040446	76041446	+	859.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40162.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-46710853-2	chr12	46710353	46711353	+	859.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_021361, intron 4 of 4)	intron (NM_021361, intron 4 of 4)	107922.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46815510-3	chr11	46814998	46815998	+	859.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178759, exon 2 of 9)	exon (NM_178759, exon 2 of 9)	4699.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	2.0	12.5	8.0	3.5	6.0	12.5
Merged-chr10-105957631-4	chr10	105957146	105958146	+	859.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116167.0	NM_025602	52713.0	Mm.339224	NM_025602	ENSMUSG00000019897	Ccdc59	2300004H16Rik|D10Ertd718e	coiled-coil domain containing 59	protein-coding	1.0	0.0	1.0	0.0	0.0	0.5
Merged-chr5-146770361-4	chr5	146769872	146770872	+	859.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	24584.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	4.5	23.0	19.0	5.5	8.0	6.5
Merged-chr9-31163289-5	chr9	31162796	31163796	+	859.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357698, intron 9 of 17)	intron (NM_001357698, intron 9 of 17)	-31497.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86697046-4	chr4	86696552	86697552	+	859.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26993.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	2.5	0.5	6.5	0.5	0.5	5.0
Merged-chr3-27184848-3	chr3	27184377	27185377	+	859.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	1873.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-67431536-3	chr8	67431039	67432039	+	859.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59219.0	NM_008673	17960.0	Mm.14125	NM_008673	ENSMUSG00000025588	Nat1	Nat-1	N-acetyl transferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8801124-5	chr17	8800626	8801626	+	859.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011866)	promoter-TSS (NM_011866)	-619.0	NM_011866	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85007915-4	chr8	85007434	85008434	+	859.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_052011, exon 10 of 10)	non-coding (NR_052011, exon 10 of 10)	6474.0	NM_001130194	212989.0	Mm.215154	NM_001130194	ENSMUSG00000052819	Best2	Vmd2l1	bestrophin 2	protein-coding	0.0	4.5	0.0	11.5	0.0	6.0
Merged-chr9-24395023-4	chr9	24394543	24395543	+	859.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108097.0	NM_001359948	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78903379-4	chr17	78902906	78903906	+	859.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163625, intron 2 of 6)	intron (NM_001163625, intron 2 of 6)	3586.0	NM_001163625	73671.0	Mm.45514	NM_001163625	ENSMUSG00000038045	Sult6b1	2410078J06Rik|AV101767|ST6B1	sulfotransferase family, cytosolic, 6B, member 1	protein-coding	3.0	0.0	0.0	5.0	16.0	7.5
Merged-chr9-50944926-4	chr9	50944366	50945366	+	859.785706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178710, intron 3 of 15)	Lx7|LINE|L1	64207.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-43805766-3	chr16	43805335	43806335	+	859.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007877, intron 2 of 6)	intron (NM_007877, intron 2 of 6)	43614.0	NM_007877	13490.0	Mm.439735	NM_007877	ENSMUSG00000022705	Drd3	D3R	dopamine receptor D3	protein-coding	0.0	0.0	11.0	0.0	5.0	0.5
Merged-chr1-151718798-2	chr1	151718298	151719298	+	859.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_022018, exon 14 of 14)	3' UTR (NM_022018, exon 14 of 14)	35929.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131136166-4	chr1	131135674	131136674	+	859.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145508, intron 2 of 2)	intron (NM_145508, intron 2 of 2)	2060.0	NM_145508	226419.0	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	0.0	5.0	0.0	0.0	0.0	0.5
Merged-chr5-148451173-2	chr5	148450673	148451673	+	859.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51269.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6793665-4	chr17	6793226	6794226	+	859.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10946.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	3.0	22.5	22.0	5.0	14.0	9.0
Merged-chr6-17481229-4	chr6	17480706	17481706	+	859.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008591, intron 1 of 21)	intron (NM_008591, intron 1 of 21)	17249.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	1.5	2.0	1.0	2.0	0.0	3.5
Merged-chr16-81328011-2	chr16	81327511	81328511	+	859.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113208, intron 1 of 17)	Lx4B|LINE|L1	127314.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33092624-4	chr17	33092090	33093090	+	859.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024950, intron 1 of 3)	intron (NM_001024950, intron 1 of 3)	3223.0	NM_001024950	240068.0	Mm.121392	NM_001024950	ENSMUSG00000067424	Zfp563	D10628|D130054H01|NTfin7|Zfp413	zinc finger protein 563	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54525173-2	chr11	54524673	54525673	+	859.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 1 of 28)	L2a|LINE|L2	2328.0	NM_001252496	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-98465642-4	chr4	98465133	98466133	+	859.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005784, intron 16 of 19)	intron (NM_001005784, intron 16 of 19)	54606.0	NM_001355177	12695.0	Mm.90218	NM_007704	ENSMUSG00000061859	Patj	Cipp|Inadl	PATJ, crumbs cell polarity complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-77896507-3	chr1	77896056	77897056	+	859.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	300580.0	NM_001159520	18505.0	Mm.1371	NM_008781	ENSMUSG00000004872	Pax3	Pax-3|Sp|Splchl2|splotch	paired box 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28079881-4	chr17	28079359	28080359	+	859.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357681, intron 2 of 9)	CpG	725.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30827682-5	chr2	30827187	30828187	+	859.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133346, intron 1 of 5)	intron (NM_133346, intron 1 of 5)	613.0	NM_133346	72323.0	Mm.27656	NM_133346	ENSMUSG00000039483	Asb6	2510004M11Rik|AA409356	ankyrin repeat and SOCS box-containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47628757-4	chr9	47628255	47629255	+	859.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	98403.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	140.5	302.5	238.0	126.5	307.5	228.0
Merged-chr5-125384666-4	chr5	125384172	125385172	+	859.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5345.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108640012-4	chr9	108639511	108640511	+	859.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357286, intron 3 of 16)	intron (NM_001357286, intron 3 of 16)	9397.0	NM_011790	23807.0	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-15986683-4	chr4	15986184	15987184	+	859.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013752, intron 13 of 15)	intron (NM_013752, intron 13 of 15)	27154.0	NM_001355615	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152187298-4	chr2	152186801	152187801	+	859.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-39539.0	NM_007788	12995.0	Mm.23692	NM_007788	ENSMUSG00000074698	Csnk2a1	CK2|Csnk2a1-rs4	casein kinase 2, alpha 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52573730-4	chr2	52573270	52574270	+	859.679199	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	-15159.0	NM_001285427	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45081497-3	chr19	45080987	45081987	+	859.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5400.0	NM_001362397	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154678012-3	chr2	154677522	154678522	+	859.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	20996.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86637915-3	chr11	86637401	86638401	+	859.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 6 of 11)	intron (NM_001356531, intron 6 of 11)	33374.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103737935-3	chr3	103737424	103738424	+	859.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133859)	promoter-TSS (NM_133859)	77.0	NM_133859	99543.0	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	3.0	0.0	0.0	1.0	0.0	1.0
Merged-chr16-17812369-3	chr16	17811873	17812873	+	859.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15091.0	NM_153790	224024.0	Mm.194950	NM_153790	ENSMUSG00000012017	Scarf2	NSR1|SREC-II|SRECRP-1|Scatf1|Srec2|SrecII	scavenger receptor class F, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-41613151-3	chr15	41612649	41613649	+	859.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 2 of 17)	intron (NR_152565, intron 2 of 17)	164046.0	NM_001358977	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26444573-3	chr2	26444079	26445079	+	859.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153125, intron 1 of 29)	intron (NM_153125, intron 1 of 29)	637.0	NM_153125	227648.0	Mm.206371	NM_153125	ENSMUSG00000026924	Sec16a	AU024582|C230052J16Rik	SEC16 homolog A, endoplasmic reticulum export factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79993774-3	chr11	79993272	79994272	+	859.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199196, intron 1 of 15)	CpG	666.0	NM_199196	52615.0	Mm.283410	NM_199196	ENSMUSG00000017548	Suz12	2610028O16Rik|AI195385|AU016842|AW536442|D11Ertd530e|mKIAA0160	SUZ12 polycomb repressive complex 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4497765-2	chr19	4497265	4498265	+	859.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_027237, intron 1 of 1)	intron (NM_027237, intron 1 of 1)	818.0	NM_027237	69861.0	Mm.282978	NM_027237	ENSMUSG00000042041	2010003K11Rik	-	RIKEN cDNA 2010003K11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79139831-3	chr8	79139329	79140329	+	859.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 8 of 14)	intron (NM_001294279, intron 8 of 14)	108754.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36497269-3	chr5	36496750	36497750	+	859.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 12 of 13)	intron (NM_133910, intron 12 of 13)	12662.0	NM_025725	66717.0	Mm.42368	NM_025725	ENSMUSG00000050677	Ccdc96	4921513E08Rik	coiled-coil domain containing 96	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr5-140332274-4	chr5	140331769	140332769	+	859.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026510)	promoter-TSS (NM_026510)	313.0	NM_001356584	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-124068581-3	chr9	124068085	124069085	+	859.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33598.0	NM_009915	12772.0	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27480115-2	chr7	27479615	27480615	+	859.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	6275.0	NM_133210	170742.0	Mm.200120	NM_133210	ENSMUSG00000055200	Sertad3	AW124805|D1Mgi51|Rbt1|Sei3	SERTA domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103510442-4	chr15	103509926	103510926	+	859.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357980, intron 1 of 14)	intron (NM_001357980, intron 1 of 14)	3300.0	NM_001357980	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8196490-3	chr10	8195995	8196995	+	859.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-240372.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72261246-4	chr8	72260741	72261741	+	859.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21223.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	8.0	4.0	3.0	0.0	2.5	4.0
Merged-chr9-38804970-2	chr9	38804470	38805470	+	859.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16-int|LTR|ERVK	-10438.0	NM_146781	258777.0	Mm.223208	NM_146781	ENSMUSG00000043911	Olfr922	MOR161-3	olfactory receptor 922	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90134228-7	chr7	90133728	90134728	+	859.654785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	B1_Mus2|SINE|Alu	4015.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	74.5	137.0	120.5	111.5	218.5	112.5
Merged-chr15-99469248-4	chr15	99468750	99469750	+	859.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029236)	TTS (NM_029236)	5480.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35214814-4	chr17	35214336	35215336	+	859.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9485.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	4.0	11.5	4.0	1.0	14.0	11.5
Merged-chr3-35933611-4	chr3	35933083	35934083	+	859.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205361)	promoter-TSS (NM_001205361)	-617.0	NM_001205361	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-96105788-3	chr6	96105281	96106281	+	859.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-7373.0	NM_182808	320265.0	Mm.489890	NM_182808	ENSMUSG00000059187	Fam19a1	C630007B19Rik|FAM19A1 TAFA-1|TAFA1|Tafa-1	family with sequence similarity 19, member A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101255229-4	chr4	101254732	101255732	+	859.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 1 of 24)	B4A|SINE|B4	10050.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36719293-2	chr16	36718793	36719793	+	859.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285791, intron 5 of 6)	intron (NM_001285791, intron 5 of 6)	25315.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54974748-2	chr6	54974248	54975248	+	859.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2136.0	NM_172729	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	12.5	18.0	4.0	0.5	1.5	5.0
Merged-chr6-65142855-3	chr6	65142344	65143344	+	859.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019455, intron 1 of 5)	intron (NM_019455, intron 1 of 5)	1886.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62985876-4	chr18	62985358	62986358	+	859.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028017, intron 5 of 11)	MER102c|DNA|hAT-Charlie	7942.0	NM_028017	108123.0	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-75637200-3	chr12	75636690	75637690	+	859.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028203, intron 1 of 1)	intron (NM_028203, intron 1 of 1)	-5441.0	NR_038063	665931.0	Mm.341719	NR_038063		Rplp2-ps1	Gm7852	ribosomal protein, large P2, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31091335-3	chr3	31090835	31091835	+	859.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3723.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86444208-4	chr1	86443697	86444697	+	859.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17868.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40520037-4	chr12	40519534	40520534	+	859.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	73981.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65416408-4	chr18	65415881	65416881	+	859.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	-14616.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	3.0	2.0	1.0	0.0	8.5	0.0
Merged-chr13-12475480-4	chr13	12474919	12475919	+	859.535706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133643, exon 6 of 6)	3' UTR (NM_133643, exon 6 of 6)	-13681.0	NM_001291057	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-97480991-4	chr16	97480487	97481487	+	859.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020622, intron 3 of 7)	MTE2b|LTR|ERVL-MaLR	-18081.0	NR_003520	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52632433-2	chr13	52631933	52632933	+	859.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 8 of 13)	ID4_|SINE|ID	35551.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118861942-2	chr9	118861442	118862442	+	859.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 9 of 13)	B4A|SINE|B4	-64594.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116050786-1	chr6	116050286	116051286	+	859.5	f0_balb.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	-55781.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-12500760-4	chr4	12500261	12501261	+	859.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-328746.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133370267-4	chr4	133369735	133370735	+	859.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_039582)	TTS (NR_039582)	459.0	NR_039582	100628620.0		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139255844-2	chr5	139255344	139256344	+	859.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163316, intron 1 of 8)	intron (NM_001163316, intron 1 of 8)	2347.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88878514-3	chr4	88878034	88879034	+	859.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1667.0	NM_177348	230405.0	Mm.246593	NM_177348	ENSMUSG00000045364	Ifne	Ifn-tau-1|Ifne1|Ifnt1|Infe1	interferon epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119408347-2	chr13	119407847	119408847	+	859.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308506, intron 1 of 16)	intron (NM_001308506, intron 1 of 16)	664.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108531370-3	chr6	108530853	108531853	+	859.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 60 of 61)	intron (NM_010585, intron 60 of 61)	41610.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-142031975-2	chr4	142031475	142032475	+	859.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_145402, exon 3 of 3)	exon (NM_145402, exon 3 of 3)	14077.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89449687-4	chr3	89449195	89450195	+	859.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_146131, exon 11 of 11)	3' UTR (NM_146131, exon 11 of 11)	-4846.0	NM_001310640	68603.0	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26689353-4	chr8	26688853	26689853	+	859.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	135070.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	9.5	59.5	38.5	13.0	44.5	32.5
Merged-chr2-131263483-2	chr2	131262983	131263983	+	859.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_149748, intron 1 of 8)	intron (NR_149748, intron 1 of 8)	644.0	NR_149748	74450.0	Mm.101264	NM_153501	ENSMUSG00000037514	Pank2	4933409I19Rik|AI642621	pantothenate kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128053305-2	chr7	128052805	128053805	+	859.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4c|LINE|L1	-9335.0	NM_001082960	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-58449356-2	chr10	58448856	58449856	+	859.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011240, intron 1 of 28)	B2_Mm2|SINE|B2	2504.0	NM_011240	19386.0	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-51524497-5	chr6	51524054	51525054	+	859.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361581, intron 1 of 6)	intron (NM_001361581, intron 1 of 6)	294.0	NM_001361580	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	24.5	47.5	36.5	36.5	61.5	54.5
Merged-chr8-84909519-2	chr8	84909019	84910019	+	859.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010062, intron 3 of 5)	intron (NM_010062, intron 3 of 5)	895.0	NM_010062	13423.0	Mm.350831	NM_010062	ENSMUSG00000003812	Dnase2a	Dnase2	deoxyribonuclease II alpha	protein-coding	47.5	151.0	108.5	62.0	135.5	112.0
Merged-chr15-97517423-2	chr15	97516923	97517923	+	859.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	188399.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10678685-3	chr19	10678196	10679196	+	859.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021453)	promoter-TSS (NM_021453)	-625.0	NM_021453	58803.0	Mm.34037	NM_021453	ENSMUSG00000024738	Pga5	1110035E17Rik|Pepf	pepsinogen 5, group I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136696251-2	chr1	136695751	136696751	+	859.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037986)	promoter-TSS (NR_037986)	40.0	NR_037986	100503474.0	Mm.428276	NR_037986		Platr22	Gm16880	pluripotency associated transcript 22	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30040211-3	chr16	30039714	30040714	+	859.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045878)	promoter-TSS (NR_045878)	-735.0	NR_045878	71528.0	Mm.297640	NR_045878		9030404E10Rik	-	RIKEN cDNA 9030404E10 gene	ncRNA	6.0	0.0	0.0	2.0	2.0	0.0
Merged-chr11-87019032-2	chr11	87018532	87019532	+	859.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-25270.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59537640-2	chr11	59537140	59538140	+	859.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3929.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91767334-2	chr16	91766834	91767834	+	859.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	RSINE1|SINE|B4	37963.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29964529-2	chr2	29964029	29965029	+	859.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1031.0	NM_001177668	20740.0	Mm.204969	NM_001076554	ENSMUSG00000057738	Sptan1	2610027H02Rik|Spna-2|Spna2	spectrin alpha, non-erythrocytic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135931284-2	chr4	135930784	135931784	+	859.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024243, intron 4 of 7)	intron (NM_024243, intron 4 of 7)	10558.0	NM_024243	71665.0	Mm.439940	NM_024243	ENSMUSG00000028673	Fuca1	0610006A03Rik|9530055J05Rik|Afuc|Fuca	fucosidase, alpha-L- 1, tissue	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-124037016-2	chr9	124036516	124037516	+	859.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15045.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67196967-2	chr10	67196467	67197467	+	859.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 3 of 25)	B3|SINE|B2	11217.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89315800-2	chr3	89315300	89316300	+	859.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010108, intron 4 of 4)	intron (NM_010108, intron 4 of 4)	7079.0	NM_010108	13638.0	Mm.331159	NM_010108	ENSMUSG00000028039	Efna3	AW494418|EFL-2|Ehk1-L|Epl3|LERK-3	ephrin A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-113641845-2	chr8	113641334	113642334	+	859.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048143, intron 5 of 5)	intron (NM_001048143, intron 5 of 5)	-1379.0	NM_029139	668110.0	Mm.390078	NM_029139	ENSMUSG00000033409	Syce1l	4930481F22Rik|MMRP|PSESS|mmrp2	synaptonemal complex central element protein 1 like	protein-coding	0.0	0.0	2.0	0.0	0.0	2.0
Merged-chr3-152152158-2	chr3	152151658	152152658	+	859.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016867, intron 1 of 5)	intron (NM_016867, intron 1 of 5)	13742.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-14003000-4	chr14	14002492	14003492	+	859.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9499.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85139111-2	chr11	85138611	85139611	+	859.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029934, intron 1 of 33)	intron (NM_001029934, intron 1 of 33)	844.0	NM_001029934	237898.0	Mm.178524	NM_001029934	ENSMUSG00000000804	Usp32	2900074J03Rik|6430526O11Rik|AW045245	ubiquitin specific peptidase 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20738649-2	chr18	20738149	20739149	+	859.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 1 of 8)	(A)n|Simple_repeat|Simple_repeat	7755.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52568225-2	chr13	52567725	52568725	+	859.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	5000.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92958574-2	chr16	92958074	92959074	+	859.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132500.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120711668-3	chr5	120711148	120712148	+	859.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008052)	promoter-TSS (NM_008052)	21.0	NM_008052	14357.0	Mm.1645	NM_008052	ENSMUSG00000029603	Dtx1	Fxit1|mKIAA4160	deltex 1, E3 ubiquitin ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-96919198-4	chr5	96918711	96919711	+	859.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2061.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	110.0	262.5	125.5	121.0	162.5	139.5
Merged-chr11-26213814-4	chr11	26213265	26214265	+	859.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-3189.0	NR_027973	70626.0	Mm.379180	NM_027486		5730522E02Rik	-	RIKEN cDNA 5730522E02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171826286-7	chr1	171825779	171826779	+	859.4523929999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEg2|LINE|L1	-13418.0	NM_001252472	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	47.0	77.0	59.5	71.5	228.0	193.5
Merged-chr12-13498902-3	chr12	13498398	13499398	+	859.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027706, intron 44 of 51)	intron (NM_027706, intron 44 of 51)	128748.0	NR_136761	102639399.0	Mm.122052	NR_136761	ENSMUSG00000113666	Gm35725	-	predicted gene, 35725	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-45029664-3	chr16	45029169	45030169	+	859.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64342.0	NM_026439	67896.0	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117335793-3	chr10	117335295	117336295	+	859.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4-int|LTR|ERVK	41178.0	NM_001013391	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	15.0	2.0	0.0	15.0	2.0	0.5
Merged-chr1-33906263-4	chr1	33905772	33906772	+	859.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 1 of 6)	intron (NM_177235, intron 1 of 6)	1349.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122925294-4	chr7	122924807	122925807	+	859.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	45152.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-140684693-4	chr4	140684135	140685135	+	859.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16838.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	1.0	1.0	1.5	2.0	0.0	0.5
Merged-chr17-47429067-3	chr17	47428571	47429571	+	859.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029296, intron 3 of 3)	intron (NM_029296, intron 3 of 3)	-7191.0	NM_001347584	75462.0	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32379782-4	chr19	32379348	32380348	+	859.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 1 of 9)	intron (NM_144792, intron 1 of 9)	8201.0	NM_001362423	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	3.0	5.5	2.0	3.0	1.0	0.5
Merged-chr9-40776636-3	chr9	40776145	40777145	+	859.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 5 of 6)	RSINE1|SINE|B4	-24628.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	4.5	5.0	0.5	0.0	0.0	4.5
Merged-chr6-51743570-3	chr6	51743088	51744088	+	859.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	198295.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60369828-4	chr2	60369364	60370364	+	859.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013825, intron 2 of 34)	intron (NM_013825, intron 2 of 34)	13367.0	NM_013825	17076.0	Mm.2074	NM_013825	ENSMUSG00000026980	Ly75	CD205|DEC-205|DEC205	lymphocyte antigen 75	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88623548-4	chr3	88623039	88624039	+	859.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 1 of 21)	intron (NM_001198913, intron 1 of 21)	2145.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	9.5	63.0	36.5	39.0	73.0	37.5
Merged-chr9-110635371-4	chr9	110634851	110635851	+	859.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_106186)	TTS (NR_106186)	764.0	NR_106186	102466885.0		NR_106186	ENSMUSG00000099275	Mir8107	Gm27455|mmu-mir-8107	microRNA 8107	ncRNA	1.5	2.5	1.0	2.0	0.0	0.0
Merged-chr11-34074691-4	chr11	34074185	34075185	+	859.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 8 of 20)	intron (NM_010696, intron 8 of 20)	23869.0	NR_155520	76874.0	Mm.437529	NR_155520		4930469K13Rik	-	RIKEN cDNA 4930469K13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155108574-4	chr1	155108004	155109004	+	859.354126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8868.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	2.5	1.5	4.0	2.5	0.0	1.0
Merged-chr10-17721814-4	chr10	17721378	17722378	+	859.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1350.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-64847114-4	chr18	64846596	64847596	+	859.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40660.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	2.5	1.0	1.5	1.5	1.0	2.0
Merged-chr6-55232857-2	chr6	55232369	55233369	+	859.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142781, intron 5 of 17)	intron (NM_001142781, intron 5 of 17)	29486.0	NM_001142781	330323.0	Mm.268997	NM_177883	ENSMUSG00000038022	Mindy4	C330043M08Rik|Fam188b|Gm1406	MINDY lysine 48 deubiquitinase 4	protein-coding	0.0	2.0	0.0	0.5	2.5	0.0
Merged-chr9-3018357-2	chr9	3017858	3018858	+	859.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	20385.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71878184-3	chr6	71877655	71878655	+	859.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30607.0	NR_155285	69956.0	Mm.30256	NM_027275	ENSMUSG00000063884	Ptcd3	2610034F17Rik|2810422B04Rik|AA589622|AU045708|MRP-S39	pentatricopeptide repeat domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84429926-3	chr2	84429428	84430428	+	859.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4662.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-90084513-3	chr15	90084000	90085000	+	859.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139811.0	NM_001033441	380959.0	Mm.17853	NM_001033441	ENSMUSG00000075470	Alg10b	AA469671|AU045404|AW123895|C85569|Deaf1|Gm917|nse5	asparagine-linked glycosylation 10B (alpha-1,2-glucosyltransferase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79233916-3	chr3	79233409	79234409	+	859.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045502, intron 1 of 2)	intron (NR_045502, intron 1 of 2)	20990.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	26.5	15.5	4.0	18.5	15.5	4.5
Merged-chr1-135815526-3	chr1	135815016	135816016	+	859.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3082.0	NM_133664	16763.0	Mm.36726	NM_133664	ENSMUSG00000041782	Lad1	LADA|lad-1	ladinin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-14022028-3	chr13	14021533	14022533	+	859.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178337, intron 3 of 16)	MMVL30-int|LTR|ERV1	17605.0	NR_130788	70430.0	Mm.260209	NM_178337	ENSMUSG00000039233	Tbce	2610206D02Rik|C530005D02Rik|pmn	tubulin-specific chaperone E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77758535-3	chr18	77758034	77759034	+	859.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357531, intron 9 of 10)	intron (NM_001357531, intron 9 of 10)	9265.0	NM_146089	225745.0	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44327866-2	chr9	44327366	44328366	+	859.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_007875, intron 2 of 8)	ID4|SINE|ID	1021.0	NM_007875	13478.0	Mm.18353	NM_007875	ENSMUSG00000032123	Dpagt1	AU021132|Dpagt2|GPT|Gnpta	dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-104949058-3	chr4	104948554	104949554	+	859.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104376, intron 3 of 20)	intron (NR_104376, intron 3 of 20)	35598.0	NM_001285952	242594.0	Mm.65181	NM_001162980	ENSMUSG00000078612	Fyb2	1700024P16Rik|ARAP|C1orf168|Gm620	FYN binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27756202-3	chr2	27755677	27756677	+	859.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 7 of 9)	intron (NM_001290481, intron 7 of 9)	45594.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-91387980-3	chr13	91387482	91388482	+	859.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045161, exon 1 of 3)	non-coding (NR_045161, exon 1 of 3)	103.0	NR_045161	320297.0	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127541373-3	chr10	127540875	127541875	+	859.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 80 of 88)	intron (NM_008512, intron 80 of 88)	-6816.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	6.0	10.5	10.5	0.5	2.0	3.0
Merged-chr6-87525001-3	chr6	87524502	87525502	+	859.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	8257.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	1.0	20.5	14.0	2.0	10.0	8.5
Merged-chr6-88042929-2	chr6	88042429	88043429	+	859.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293652, intron 1 of 7)	B4|SINE|B4	2088.0	NM_001293653	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-62834143-4	chr16	62833653	62834653	+	859.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026577, intron 1 of 9)	L2a|LINE|L2	12887.0	NM_026577	68146.0	Mm.96833	NM_026577	ENSMUSG00000022911	Arl13b	A530097K21Rik|A930014M17Rik|Arl2l1|C530009C10Rik|hnn	ADP-ribosylation factor-like 13B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6302685-3	chr19	6302184	6303184	+	859.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3773.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20742549-3	chr18	20742049	20743049	+	859.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	3855.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20655950-3	chr14	20655414	20656414	+	859.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021508, intron 1 of 5)	intron (NM_021508, intron 1 of 5)	626.0	NM_021508	59011.0	Mm.439911	NM_021508	ENSMUSG00000068697	Myoz1	2310001N11Rik|AV090278|FATZ|Myoz	myozenin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120457309-3	chr6	120456817	120457817	+	859.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-5880.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125268221-3	chr5	125267726	125268726	+	859.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72868.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100854358-4	chr13	100853814	100854814	+	859.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20887.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	2.5	0.5	0.0	0.0	0.0	0.0
Merged-chr3-104822610-4	chr3	104822095	104823095	+	859.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001355044)	TTS (NM_001355044)	-4032.0	NM_001163440	17454.0	Mm.1597	NM_008619	ENSMUSG00000002227	Mov10	C77703|Mov-10	Moloney leukemia virus 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165658795-4	chr1	165658298	165659298	+	859.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 3 of 5)	intron (NM_001038846, intron 3 of 5)	-24257.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93507813-4	chr2	93507310	93508310	+	859.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-44860.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-47280341-4	chr4	47279841	47280841	+	859.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 17 of 39)	intron (NM_009928, intron 17 of 39)	72329.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3820803-4	chr12	3820307	3821307	+	859.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	13647.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151653651-4	chr1	151653148	151654148	+	859.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 5 of 13)	intron (NM_022018, intron 5 of 13)	82275.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-105348003-4	chr11	105347477	105348477	+	859.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008626, exon 26 of 30)	exon (NM_008626, exon 26 of 30)	55331.0	NM_008626	17534.0	Mm.235616	NM_008626	ENSMUSG00000020695	Mrc2	Endo180|mKIAA0709|uPARAP	mannose receptor, C type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134106941-4	chr1	134106433	134107433	+	859.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4309.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166654157-4	chr2	166653592	166654592	+	859.223206	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	59740.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-43841512-3	chr16	43841014	43842014	+	859.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48162.0	NM_029128	106248.0	Mm.275354	NM_029128	ENSMUSG00000022704	Qtrt2	3110012M05Rik|4930470H18Rik|AI648807|Qrtr2|Qtrtd1	queuine tRNA-ribosyltransferase accessory subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116654338-4	chr6	116653855	116654855	+	859.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178045, intron 3 of 10)	intron (NM_178045, intron 3 of 10)	3671.0	NM_001166580	213393.0	Mm.38231	NM_145980	ENSMUSG00000048489	8430408G22Rik	Depp|Depp1|Fseg	RIKEN cDNA 8430408G22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-10007407-4	chr8	10006935	10007935	+	859.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033622, intron 2 of 6)	intron (NM_033622, intron 2 of 6)	802.0	NM_033622	24099.0	Mm.28835	NM_033622	ENSMUSG00000031497	Tnfsf13b	BAFF|BLyS|D8Ertd387e|TALL-1|TALL1|THANK|TNFSF20|Tnlg7a|zTNF4	tumor necrosis factor (ligand) superfamily, member 13b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-56068149-3	chr9	56067647	56068647	+	859.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21829.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75936820-3	chr2	75936327	75937327	+	859.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028235, exon 1 of 1)	exon (NM_028235, exon 1 of 1)	1635.0	NM_028235	72421.0	Mm.275109	NM_028235	ENSMUSG00000075273	Ttc30b	2510042P03Rik|Tcc30b	tetratricopeptide repeat domain 30B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32951635-3	chr17	32951123	32952123	+	859.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033585, exon 3 of 3)	non-coding (NR_033585, exon 3 of 3)	-4262.0	NM_130882	170716.0	Mm.254838	NM_130882	ENSMUSG00000024055	Cyp4f13	0610030I10Rik|Cypf13	cytochrome P450, family 4, subfamily f, polypeptide 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107155805-1	chr3	107155305	107156305	+	859.1666869999999	f0_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-27338.0	NM_001081140	242151.0	Mm.245155	NM_001081140	ENSMUSG00000042861	Kcna10	Gm1962|Kcna8|Kv1.8	potassium voltage-gated channel, shaker-related subfamily, member 10	protein-coding	0.5	3.5	0.5	8.0	5.0	1.0
Merged-chr9-114747993-6	chr9	114747432	114748432	+	859.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026036, exon 4 of 4)	3' UTR (NM_026036, exon 4 of 4)	16729.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	0.0	14.0	16.5	2.5	5.0	5.0
Merged-chr9-77660648-2	chr9	77660148	77661148	+	859.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172925)	TTS (NM_172925)	23916.0	NM_172925	244923.0	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115705274-2	chr11	115704777	115705777	+	859.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008163, intron 1 of 5)	intron (NM_008163, intron 1 of 5)	3320.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118453347-2	chr11	118452847	118453847	+	859.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_045902, intron 1 of 2)	RMER13B|LTR|ERVK	1648.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-67851410-2	chr9	67850910	67851910	+	859.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_177184, intron 1 of 84)	(CA)n|Simple_repeat|Simple_repeat	11014.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	0.0	1.0	0.0	5.0	0.0	0.0
Merged-chr9-104140523-4	chr9	104140018	104141018	+	859.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13875.0	NM_145700	252837.0	Mm.269254	NM_145700	ENSMUSG00000079355	Ackr4	A630091E18Rik|CCBP2|CCR11|CCX-CKR|CCX-CKR1|Ccrl1|Cmkbrl1|PPR1|VSHK1	atypical chemokine receptor 4	protein-coding	31.0	28.0	34.5	8.5	32.0	29.0
Merged-chr2-180925373-4	chr2	180924890	180925890	+	859.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3633.0	NM_001163247	329581.0	Mm.187879	NM_001163247	ENSMUSG00000038840	Birc7	E130019N06|KIAP|Livin|ML-IAP	baculoviral IAP repeat-containing 7 (livin)	protein-coding	0.0	0.0	2.0	4.5	0.0	0.0
Merged-chr6-52488017-4	chr6	52487530	52488530	+	859.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4421.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-174106773-3	chr2	174106282	174107282	+	859.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3569.0	NM_213733	228961.0	Mm.295629	NM_213733	ENSMUSG00000039263	Npepl1	BC023239|C85514|mKIAA1974	aminopeptidase-like 1	protein-coding	0.0	2.0	0.0	1.5	10.0	0.0
Merged-chr2-31141297-3	chr2	31140859	31141859	+	859.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 1 of 15)	CpG	649.0	NM_001355106	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10039035-3	chr17	10038557	10039557	+	859.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-263191.0	NR_045433	71092.0	Mm.243827	NR_045433		4930452A19Rik	4933424P20Rik	RIKEN cDNA 4930452A19 gene	ncRNA	0.0	10.0	5.5	0.0	0.0	3.0
Merged-chr19-11372481-3	chr19	11371980	11372980	+	859.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3008.0	NM_001310331	666907.0		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120977565-4	chr2	120977116	120978116	+	859.089294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175285, intron 1 of 13)	CpG	554.0	NM_175285	96957.0	Mm.315212	NM_175285	ENSMUSG00000054484	Tmem62	B830009D23Rik|C77355	transmembrane protein 62	protein-coding	2.0	17.0	9.5	9.5	32.5	29.0
Merged-chr15-33183874-4	chr15	33183395	33184395	+	859.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018755, intron 2 of 8)	intron (NM_018755, intron 2 of 8)	100766.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108654757-4	chr3	108654282	108655282	+	859.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177771, intron 2 of 12)	intron (NM_001177771, intron 2 of 12)	842.0	NM_001177770	229725.0	Mm.214545	NM_145543	ENSMUSG00000027884	Clcc1	Mclc	chloride channel CLIC-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21231910-4	chr14	21231391	21232391	+	859.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134079, intron 4 of 10)	L1M3|LINE|L1	155739.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	0.0	0.0	2.0	1.0	0.0	2.5
Merged-chr12-38781035-4	chr12	38780464	38781464	+	859.0729369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007960, exon 2 of 13)	exon (NM_007960, exon 2 of 13)	882.0	NM_007960	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	15.0	6.0	14.0	15.0	6.0	14.0
Merged-chr8-95024578-4	chr8	95024050	95025050	+	859.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173036, intron 2 of 11)	intron (NM_173036, intron 2 of 11)	6858.0	NM_173036	54672.0	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11049081-5	chr8	11048582	11049582	+	859.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046017, intron 2 of 4)	intron (NR_046017, intron 2 of 4)	-40652.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6271457-4	chr19	6270945	6271945	+	859.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5451.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20176228-3	chr11	20175718	20176718	+	859.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25194.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97906091-3	chr7	97905600	97906600	+	859.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357362, intron 14 of 15)	ORR1D2|LTR|ERVL-MaLR	-13858.0	NM_177696	233537.0	Mm.375772	NM_177696	ENSMUSG00000035582	Gdpd4	4921513O04	glycerophosphodiester phosphodiesterase domain containing 4	protein-coding	14.0	35.0	30.5	10.5	10.0	2.5
Merged-chr13-74010513-8	chr13	74009924	74010924	+	859.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182839, intron 1 of 3)	intron (NM_182839, intron 1 of 3)	1005.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101279824-2	chr15	101279324	101280324	+	859.041626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4477.0	NM_026566	68118.0	Mm.482360	NM_026566	ENSMUSG00000037204	Atg101	9430023L20Rik|AA407441|AU022967	autophagy related 101	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-98030528-4	chr5	98030038	98031038	+	859.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133738, exon 1 of 17)	exon (NM_133738, exon 1 of 17)	424.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	11.5	0.0	5.5	5.0	4.5	2.0
Merged-chr2-145863300-4	chr2	145862770	145863770	+	859.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 9 of 12)	intron (NM_028724, intron 9 of 12)	-39971.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	28.5	23.0	34.5	20.0	37.0	29.0
Merged-chr1-87568690-2	chr1	87568190	87569190	+	859.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111314, intron 1 of 14)	intron (NM_001111314, intron 1 of 14)	5180.0	NM_001111314	53972.0	Mm.435439	NM_019867	ENSMUSG00000026259	Ngef	Tims2|ephexin	neuronal guanine nucleotide exchange factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130295109-2	chr2	130294609	130295609	+	859.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110513)	promoter-TSS (NM_001110513)	-830.0	NM_001110513	228598.0	Mm.32582	NM_152993	ENSMUSG00000053552	Ebf4	Ebf3|O/E-4|Olf-1	early B cell factor 4	protein-coding	2.5	0.0	2.5	2.5	0.5	12.5
Merged-chr10-118810482-2	chr10	118809982	118810982	+	859.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	58421.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118661342-2	chr9	118660825	118661825	+	859.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 6 of 27)	intron (NM_133721, intron 6 of 27)	-50367.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	62.0	129.0	66.5	34.5	114.0	85.0
Merged-chr10-128744876-2	chr10	128744376	128745376	+	859.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016811)	promoter-TSS (NM_016811)	208.0	NM_001358745	13139.0	Mm.291235	NM_016811	ENSMUSG00000025357	Dgka	80kDa|AW146112|Dagk1	diacylglycerol kinase, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91922971-2	chr2	91922471	91923471	+	859.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007699, intron 1 of 1)	intron (NM_007699, intron 1 of 1)	782.0	NM_007699	12672.0	Mm.330405	NM_007699	ENSMUSG00000040495	Chrm4	Chrm-4|M4	cholinergic receptor, muscarinic 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-124908380-3	chr4	124907875	124908875	+	859.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256432, intron 8 of 16)	intron (NM_001256432, intron 8 of 16)	-13593.0	NR_040651	73628.0	Mm.398337	NR_040651	ENSMUSG00000085263	1700125G02Rik	-	RIKEN cDNA 1700125G02 gene	ncRNA	0.0	0.0	1.5	0.0	1.0	8.5
Merged-chr10-99931506-2	chr10	99931006	99932006	+	859.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84315.0	NM_001347156	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132293945-2	chr2	132293445	132294445	+	859.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291040, intron 2 of 3)	intron (NM_001291040, intron 2 of 3)	8006.0	NM_001291039	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98206550-2	chr11	98206050	98207050	+	859.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026952, intron 1 of 12)	B2_Mm1a|SINE|B2	3245.0	NM_001109626	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-22142546-3	chr3	22142032	22143032	+	859.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	65880.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3784201-2	chr4	3783701	3784701	+	859.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 12 of 12)	intron (NM_001111096, intron 12 of 12)	51454.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0.5	0.0	4.0	0.5	0.5	3.0
Merged-chr7-126786201-2	chr7	126785701	126786701	+	859.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011538)	TTS (NM_011538)	4718.0	NM_011538	21389.0	Mm.727	NM_011538	ENSMUSG00000030699	Tbx6	rv	T-box 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59396859-3	chr2	59396359	59397359	+	859.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10177.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130783929-1	chr2	130783429	130784429	+	859.0	f0_balb.idr	intron (NM_029432, intron 12 of 36)	intron (NM_029432, intron 12 of 36)	20172.0	NR_024097	100043766.0	Mm.447040	NR_024097		Gm14057	-	Ppp1r14c pseudogene	pseudo	5.0	4.0	1.5	37.5	37.5	28.5
Merged-chr16-21595166-2	chr16	21594666	21595666	+	859.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 44 of 46)	intron (NM_001081366, intron 44 of 46)	99499.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-55125091-3	chr18	55124586	55125586	+	859.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132495.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	3.0	1.5	0.0	1.0	1.0	0.0
Merged-chr12-4600914-2	chr12	4600414	4601414	+	859.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198969, intron 1 of 16)	intron (NM_001198969, intron 1 of 16)	7906.0	NM_001198968	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44392357-2	chr16	44391857	44392857	+	859.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2442.0	NM_001033247	212517.0	Mm.327888	NM_001033247	ENSMUSG00000071550	Cfap44	6330444M21Rik|D16Ertd642e|Gm1750|Wdr52	cilia and flagella associated protein 44	protein-coding	10.5	0.0	2.5	10.5	0.0	3.0
Merged-chr11-114790910-2	chr11	114790410	114791410	+	859.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001102615)	TTS (NM_001102615)	4982.0	NM_028055	72014.0	Mm.38347	NM_028055	ENSMUSG00000000202	Btbd17	1500005I02Rik|Tango10a	BTB (POZ) domain containing 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134079772-4	chr6	134079251	134080251	+	859.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	44051.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	2.0	9.5	5.5	2.5	9.5	1.5
Merged-chr6-31178437-3	chr6	31177938	31178938	+	859.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	40036.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-75412067-2	chr17	75411567	75412567	+	859.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	-23838.0	NM_001166493	240168.0	Mm.329203	NM_207246	ENSMUSG00000071042	Rasgrp3	BC066069|Gm327	RAS, guanyl releasing protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108513875-2	chr9	108513375	108514375	+	859.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133794, intron 16 of 23)	intron (NM_133794, intron 16 of 23)	-3212.0	NM_001114119	69232.0	Mm.335449	NM_175143	ENSMUSG00000006673	Qrich1	2610028H07Rik|b2b2404Clo	glutamine-rich 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-71346871-4	chr10	71346367	71347367	+	859.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347191)	promoter-TSS (NM_001347191)	-896.0	NM_001347191	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91480682-3	chr16	91480170	91481170	+	859.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-4545.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134877035-3	chr6	134876526	134877526	+	859.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167694, intron 3 of 3)	intron (NM_001167694, intron 3 of 3)	10759.0	NR_074084	14760.0	Mm.4787	NM_008157	ENSMUSG00000032641	Gpr19	-	G protein-coupled receptor 19	protein-coding	1.0	12.0	11.5	5.5	0.0	4.5
Merged-chr8-13889344-2	chr8	13888844	13889844	+	859.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359059, intron 1 of 2)	intron (NM_001359059, intron 1 of 2)	927.0	NM_001359059	66423.0	Mm.29063	NM_025556	ENSMUSG00000031458	Coprs	1700029I03Rik|2410022L05Rik|AA409325|AI256813|C85432|Copr5	coordinator of PRMT5, differentiation stimulator	protein-coding	2.0	20.0	6.0	2.0	20.0	6.0
Merged-chr19-25139181-1	chr19	25138681	25139681	+	859.0	f1_c57bl6.idr	intron (NM_028785, intron 23 of 47)	intron (NM_028785, intron 23 of 47)	-97794.0	NM_181404	107351.0	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	38.5	150.0	78.0	23.0	60.0	35.0
Merged-chr17-37203064-3	chr17	37202594	37203594	+	859.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-5128.0	NM_001011518	258219.0	Mm.377382	NM_001011518	ENSMUSG00000043827	Olfr94	MOR256-32P	olfactory receptor 94	protein-coding	0.0	1.0	4.0	1.0	6.0	5.5
Merged-chr19-53431179-2	chr19	53430679	53431679	+	859.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	33617.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105046098-3	chr3	105045590	105046590	+	859.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 1 of 5)	intron (NM_030249, intron 1 of 5)	6863.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83744244-1	chr8	83743744	83744744	+	859.0	f1_balb.idr	Intergenic	Intergenic	-2933.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	16.0	27.5	8.0	9.5	5.0	8.5
Merged-chr1-124055365-2	chr1	124054865	124055865	+	859.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9806.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	6.5	0.0	2.0	0.0	1.0	4.0
Merged-chr7-120947850-3	chr7	120947350	120948350	+	859.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025298)	TTS (NM_025298)	30106.0	NM_001164096	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106566619-3	chr9	106566113	106567113	+	859.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	4354.0	NM_026090	67320.0	Mm.335431	NM_026090	ENSMUSG00000041009	Iqcf4	1700042N06Rik|mtIQ1	IQ motif containing F4	protein-coding	0.0	5.0	0.5	2.0	21.0	2.5
Merged-chr2-30061328-2	chr2	30060828	30061828	+	859.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023871)	promoter-TSS (NM_023871)	-668.0	NM_023871	56086.0	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25903273-2	chr15	25902773	25903773	+	859.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 3 of 8)	intron (NM_001034851, intron 3 of 8)	-30279.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70343920-3	chr8	70343445	70344445	+	859.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030680, intron 2 of 23)	intron (NM_030680, intron 2 of 23)	9334.0	NM_030680	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	1.5	1.5	13.0	2.5	1.0	3.5
Merged-chr19-29464193-3	chr19	29463685	29464685	+	859.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	B2_Mm2|SINE|B2	53266.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-4046830-2	chr10	4046330	4047330	+	859.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 17 of 27)	intron (NM_001170785, intron 17 of 27)	73755.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-57611901-1	chr14	57611401	57612401	+	859.0	f0_c57.idr	intron (NM_020506, intron 9 of 22)	intron (NM_020506, intron 9 of 22)	40287.0	NR_152103	67518.0	Mm.376343	NR_152103	ENSMUSG00000097933	1700039M10Rik	-	RIKEN cDNA 1700039M10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40226659-2	chr12	40226165	40227165	+	859.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045157, intron 2 of 2)	B2_Mm2|SINE|B2	3301.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155397841-3	chr2	155397354	155398354	+	859.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019825, intron 12 of 13)	B3|SINE|B2	15998.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	4.0	7.0	16.5	3.0	11.5	3.0
Merged-chr12-111157838-3	chr12	111157336	111158336	+	859.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8534.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23768703-2	chr11	23768203	23769203	+	859.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009044, intron 1 of 9)	intron (NM_009044, intron 1 of 9)	2267.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-96913883-2	chr5	96913383	96914383	+	859.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7389.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	19.0	34.5	30.0	43.0	76.0	43.0
Merged-chr5-114700143-3	chr5	114699645	114700645	+	859.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER54A|LTR|ERVL	-7634.0	NM_029992	77832.0	Mm.239698	NM_029992	ENSMUSG00000002486	Tchp	A930031F18Rik|AV279199	trichoplein, keratin filament binding	protein-coding	9.5	33.5	37.0	11.0	37.0	28.0
Merged-chr7-98605803-1	chr7	98605303	98606303	+	859.0	f0_balb.idr	intron (NM_172280, intron 14 of 19)	intron (NM_172280, intron 14 of 19)	50766.0	NM_172280	233545.0	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137760256-4	chr5	137759761	137760761	+	858.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023910)	TTS (NM_023910)	14292.0	NM_029805	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84205174-2	chr8	84204656	84205656	+	858.958374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-3362.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	36.0	111.5	76.5	81.5	133.5	82.5
Merged-chr14-26491291-4	chr14	26490732	26491732	+	858.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 1 of 22)	intron (NM_001310445, intron 1 of 22)	43392.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	0.5	7.0	0.5	0.5	7.0	0.0
Merged-chr13-21279731-3	chr13	21279211	21280211	+	858.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Arg-CGA|tRNA|tRNA	12975.0	NM_010343	14780.0	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.0	11.5	3.5	2.0	0.0	1.5
Merged-chr10-42122998-3	chr10	42122503	42123503	+	858.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104621.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-185208500-4	chr1	185208019	185209019	+	858.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163754, intron 1 of 34)	intron (NM_001163754, intron 1 of 34)	4351.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	12.0	13.0	20.0	18.0	23.5	12.5
Merged-chr5-123142983-4	chr5	123142471	123143471	+	858.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001040398, exon 2 of 17)	exon (NM_001040398, exon 2 of 17)	778.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91524235-4	chr16	91523726	91524726	+	858.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	3318.0	NR_105786	102465190.0		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	17.0	14.5	12.5	8.0	29.0	6.0
Merged-chr17-47795627-4	chr17	47795109	47796109	+	858.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9865.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr11-75324623-4	chr11	75324130	75325130	+	858.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026653, intron 5 of 16)	Lx8|LINE|L1	23753.0	NM_001164223	68275.0	Mm.102574	NM_026653	ENSMUSG00000000751	Rpa1	5031405K23Rik|70kDa|AA589576|AW557552|RF-A|RP-A|Rpa	replication protein A1	protein-coding	2.5	4.0	4.5	7.0	3.5	5.5
Merged-chr11-61749423-4	chr11	61748912	61749912	+	858.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144806, intron 5 of 11)	intron (NM_144806, intron 5 of 11)	12676.0	NM_144806	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-3118089-2	chr18	3117589	3118589	+	858.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5323.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79360358-2	chr15	79359858	79360858	+	858.900024	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001253817)	TTS (NM_001253817)	11956.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-127861142-3	chr8	127860646	127861646	+	858.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	417079.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	1.5	13.5	3.0	0.0	2.5	7.5
Merged-chr7-118480486-3	chr7	118480030	118481030	+	858.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11445.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	37.5	102.5	60.5	35.5	88.0	69.0
Merged-chr10-121488292-3	chr10	121487826	121488826	+	858.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-12076.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	40.5	47.0	72.0	66.0	86.5	61.5
Merged-chr7-96914266-4	chr7	96913782	96914782	+	858.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37245.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	5.0	1.0	0.0	1.0	0.0	1.0
Merged-chr3-136799105-4	chr3	136798603	136799603	+	858.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 2 of 13)	intron (NM_008913, intron 2 of 13)	129037.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12939342-4	chr18	12938846	12939846	+	858.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207530, intron 1 of 27)	intron (NM_207530, intron 1 of 27)	2495.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107340175-2	chr11	107339675	107340675	+	858.875	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	B4A|SINE|B4	130545.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43173441-4	chr13	43172938	43173938	+	858.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1937.0	NM_001252640	67046.0	Mm.269213	NM_025935	ENSMUSG00000021368	Tbc1d7	2610009C09Rik	TBC1 domain family, member 7	protein-coding	3.0	4.5	1.0	0.5	1.5	3.5
Merged-chr5-66364093-4	chr5	66363605	66364605	+	858.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310626, intron 9 of 15)	intron (NM_001310626, intron 9 of 15)	-26440.0	NM_001201416	11787.0	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	0.0	0.0	1.0	1.5	0.0	0.0
Merged-chr12-82189979-4	chr12	82189475	82190475	+	858.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 1 of 23)	intron (NM_001167983, intron 1 of 23)	19959.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-133134461-4	chr1	133133962	133134962	+	858.837524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133819, intron 1 of 1)	intron (NM_133819, intron 1 of 1)	3296.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	17.5	25.5	19.0	12.5	40.0	14.5
Merged-chr11-85670941-2	chr11	85670441	85671441	+	858.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	48803.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52920881-4	chr6	52920393	52921393	+	858.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 1 of 4)	intron (NM_173406, intron 1 of 4)	-11273.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55014601-2	chr14	55014081	55015081	+	858.833374	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_026890)	promoter-TSS (NM_026890)	-873.0	NM_026890	68966.0	Mm.21214	NM_026890	ENSMUSG00000022204	Ngdn	1500001L15Rik|Ngd|neuroguidin	neuroguidin, EIF4E binding protein	protein-coding	80.0	217.5	154.0	108.5	256.0	127.0
Merged-chr5-151368120-2	chr5	151367620	151368620	+	858.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045699)	promoter-TSS (NR_045699)	-555.0	NR_045700	625175.0	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-88161816-3	chr11	88161297	88162297	+	858.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198013, intron 1 of 10)	intron (NM_198013, intron 1 of 10)	-7768.0	NM_001172099	103841.0	Mm.374846	NM_198013	ENSMUSG00000018378	Cuedc1	AI841487|C330016O16Rik	CUE domain containing 1	protein-coding	0.0	1.5	0.0	5.5	4.0	4.0
Merged-chr14-25116650-3	chr14	25116108	25117108	+	858.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7347.0	NR_153781	102634576.0	Mm.317855	NR_153781		Gm32123	-	predicted gene, 32123	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-109200548-3	chr9	109200059	109201059	+	858.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4584.0	NM_177598	211305.0	Mm.225242	NM_177598	ENSMUSG00000049314	Fbxw13	E330017E16	F-box and WD-40 domain protein 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-92037140-3	chr2	92036633	92037633	+	858.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12963.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18047496-3	chr2	18046979	18047979	+	858.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028317, exon 1 of 1)	exon (NM_028317, exon 1 of 1)	970.0	NM_028317	72668.0	Mm.102183	NM_028317	ENSMUSG00000054074	Skida1	2810030E01Rik|5730507N06Rik|BB088113|DLN-1	SKI/DACH domain containing 1	protein-coding	0.0	0.0	0.0	0.0	3.5	4.5
Merged-chr4-42877076-4	chr4	42876567	42877567	+	858.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2833.0	NM_177785	277773.0	Mm.212727	NM_177785	ENSMUSG00000050141	Fam205c	4931430D02|FAM205CP	family with sequence similarity 205, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-144896519-4	chr4	144895963	144896963	+	858.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	3326.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-56070236-4	chr4	56069744	56070744	+	858.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR78|LTR|ERV1	-537769.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-84032781-4	chr6	84032299	84033299	+	858.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310152, intron 1 of 53)	RLTR19-int|LTR|ERVK	13413.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11512451-3	chr2	11512015	11513015	+	858.8214109999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	ORR1C1|LTR|ERVL-MaLR	-10425.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-51177658-3	chr17	51177171	51178171	+	858.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 1 of 21)	intron (NM_028162, intron 1 of 21)	1681.0	NM_028162	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88456874-3	chr1	88456361	88457361	+	858.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E1A|LTR|ERVL-MaLR	49851.0	NM_029269	75396.0	Mm.173058	NM_029269	ENSMUSG00000026295	Spp2	0610038O04Rik|pp-24|spp24	secreted phosphoprotein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58572881-4	chr13	58572382	58573382	+	858.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022317, intron 8 of 17)	intron (NM_022317, intron 8 of 17)	37995.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5025390-2	chr2	5024890	5025890	+	858.7999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356487, intron 12 of 13)	B2_Mm2|SINE|B2	-12599.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	0.5	1.0	0.0	0.5	1.0	0.0
Merged-chr3-142596983-3	chr3	142596470	142597470	+	858.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010259, intron 1 of 10)	Lx9|LINE|L1	2123.0	NM_010259	14468.0	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34236248-3	chr5	34235752	34236752	+	858.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 2 of 12)	intron (NM_001015039, intron 2 of 12)	-48542.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-71306376-3	chr10	71305878	71306878	+	858.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-4367.0	NR_152791	102637684.0	Mm.338906	NR_152791	ENSMUSG00000093732	Gm20609	-	predicted gene 20609	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-62868378-3	chr14	62867907	62868907	+	858.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	2865.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	43.0	48.0	73.5	25.0	48.0	63.0
Merged-chr2-71594682-3	chr2	71594184	71595184	+	858.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-47930.0	NM_010054	13392.0	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding	1.5	0.0	7.0	1.0	0.0	5.0
Merged-chr11-71996127-4	chr11	71995606	71996606	+	858.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41403.0	NM_053245	114230.0	Mm.95707	NM_053245	ENSMUSG00000040554	Aipl1	A930007I01Rik	aryl hydrocarbon receptor-interacting protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31074907-2	chr6	31074407	31075407	+	858.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11814.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84085903-4	chr17	84085383	84086383	+	858.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045458, intron 3 of 5)	intron (NR_045458, intron 3 of 5)	7223.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-44817971-4	chr2	44817469	44818469	+	858.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172662, intron 3 of 10)	ORR1B1|LTR|ERVL-MaLR	43653.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-85509928-2	chr13	85509423	85510423	+	858.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-220437.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	0.0	0.0	1.0	2.5	0.0	6.5
Merged-chr7-7282318-2	chr7	7281789	7282789	+	858.75	f0_balb.idr|f1_balb.idr	TTS (NM_001302386)	TTS (NM_001302386)	-4000.0	NR_003555	76229.0	Mm.387947	NM_001113468	ENSMUSG00000095730	Vmn2r29	6430701C03Rik	vomeronasal 2, receptor 29	protein-coding	34.0	82.0	84.5	61.5	92.0	64.0
Merged-chr14-22808417-3	chr14	22807894	22808894	+	858.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-265596.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18393219-2	chr16	18392719	18393719	+	858.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001272031, intron 1 of 16)	intron (NM_001272031, intron 1 of 16)	656.0	NM_001272032	11877.0	Mm.293599	NM_033474	ENSMUSG00000000325	Arvcf	-	armadillo repeat gene deleted in velocardiofacial syndrome	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87701968-2	chr16	87701468	87702468	+	858.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	(TCTG)n|Simple_repeat|Simple_repeat	3014.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95842943-4	chr16	95842451	95843451	+	858.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040484, intron 2 of 3)	intron (NR_040484, intron 2 of 3)	55762.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120029623-3	chr9	120029118	120030118	+	858.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6020.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	8.0	4.5	10.5	13.0	4.0	6.0
Merged-chr13-102665924-3	chr13	102665356	102666356	+	858.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27691.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15743535-3	chr17	15743021	15744021	+	858.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007690, intron 17 of 35)	intron (NM_007690, intron 17 of 35)	38554.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	6.5	2.5	7.5	9.5	9.0	9.5
Merged-chr11-82021655-3	chr11	82021156	82022156	+	858.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13921.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25627289-6	chr7	25626679	25627679	+	858.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146184)	promoter-TSS (NM_146184)	-445.0	NM_001036740	232984.0	Mm.192369	NM_146184	ENSMUSG00000059479	B3gnt8	B3galt7|B7galt7|BC025206	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111636479-3	chr8	111635980	111636980	+	858.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-6158.0	NM_027570	52815.0	Mm.27589	NM_027570	ENSMUSG00000031958	Ldhd	4733401P21Rik|D8Bwg1320e	lactate dehydrogenase D	protein-coding	4.0	0.0	15.5	15.5	1.5	2.0
Merged-chr12-80109850-3	chr12	80109374	80110374	+	858.714294	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007564, exon 2 of 2)	exon (NM_007564, exon 2 of 2)	3139.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105795854-4	chr1	105795357	105796357	+	858.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	15134.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-48876701-4	chr7	48876169	48877169	+	858.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013368, intron 4 of 12)	intron (NM_001013368, intron 4 of 12)	4372.0	NM_001013368	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-30773059-3	chr11	30772599	30773599	+	858.694458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134013, intron 1 of 46)	intron (NM_134013, intron 1 of 46)	1324.0	NM_134013	103554.0	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	56.5	152.0	100.5	75.0	177.5	122.0
Merged-chr18-36286306-6	chr18	36285816	36286816	+	858.694458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008989, intron 1 of 1)	intron (NM_008989, intron 1 of 1)	5154.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44407534-3	chr19	44407027	44408027	+	858.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009127, exon 1 of 6)	5' UTR (NM_009127, exon 1 of 6)	182.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141978709-3	chr4	141978207	141979207	+	858.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 5 of 31)	intron (NM_177868, intron 5 of 31)	-4285.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-39561127-3	chr12	39560613	39561613	+	858.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	476263.0	NM_007487	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86756292-3	chr11	86755793	86756793	+	858.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	1274.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-89093314-3	chr11	89092827	89093827	+	858.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033266)	TTS (NM_001033266)	19486.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	59.0	140.5	114.0	87.0	134.5	98.5
Merged-chr7-126752030-4	chr7	126751537	126752537	+	858.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-7589.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34600033-3	chr2	34599529	34600529	+	858.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290625, intron 10 of 11)	intron (NM_001290625, intron 10 of 11)	155203.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99627337-3	chr12	99626829	99627829	+	858.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045288, intron 1 of 1)	intron (NR_045288, intron 1 of 1)	645.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44860968-3	chr7	44860470	44861470	+	858.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290764, intron 9 of 16)	intron (NM_001290764, intron 9 of 16)	3567.0	NM_001290767	59047.0	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-104546687-3	chr2	104546184	104547184	+	858.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9974.0	NR_136919	668733.0	Mm.461873	NR_136919		Gm13884	-	SWIM type zinc finger 7 associated protein 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-82807329-3	chr6	82806854	82807854	+	858.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32900.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	7.0	2.5	0.0	6.0	2.5	1.0
Merged-chr2-166592729-3	chr2	166592233	166593233	+	858.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 17 of 39)	intron (NM_177782, intron 17 of 39)	28211.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113815955-3	chr5	113815443	113816443	+	858.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14558.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	3.0	1.0	0.0	3.0	0.5	1.0
Merged-chr1-136139548-3	chr1	136139052	136140052	+	858.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	RMER10B|LTR|ERVL	8162.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44381880-2	chr9	44381380	44382380	+	858.6666869999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_021395, exon 7 of 26)	exon (NM_021395, exon 7 of 26)	2390.0	NM_021395	12282.0	Mm.116721	NM_021395	ENSMUSG00000032115	Hyou1	AI415631|CBP-140|Cab140|Grp170|Orp150	hypoxia up-regulated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27553103-3	chr17	27552603	27553603	+	858.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3471.0	NM_001166536	15361.0	Mm.4438	NM_016660	ENSMUSG00000046711	Hmga1	AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy	high mobility group AT-hook 1	protein-coding	6.5	16.0	8.0	11.5	1.0	0.5
Merged-chr4-86555248-4	chr4	86554741	86555741	+	858.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081096, intron 1 of 3)	intron (NM_001081096, intron 1 of 3)	3062.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	0.0	0.5	0.0	0.0	0.5	0.0
Merged-chr17-28177879-2	chr17	28177379	28178379	+	858.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357995, intron 1 of 13)	intron (NM_001357995, intron 1 of 13)	461.0	NM_172617	224656.0	Mm.267359	NM_172617	ENSMUSG00000024220	Zfp523	2810027J07|BC025615|Znf76	zinc finger protein 523	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104995898-4	chr3	104995357	104996357	+	858.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34148.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131638895-4	chr1	131638401	131639401	+	858.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007799, intron 1 of 9)	Zaphod2|DNA|hAT-Tip100	587.0	NM_007799	13034.0	Mm.230249	NM_007799	ENSMUSG00000004552	Ctse	A430072O03Rik|C920004C08Rik|CE|CatE	cathepsin E	protein-coding	0.0	14.5	1.5	4.0	8.0	1.5
Merged-chr15-99698839-4	chr15	99698357	99699357	+	858.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001289791, exon 9 of 10)	exon (NM_001289791, exon 9 of 10)	-3430.0	NM_031842	83797.0	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	0.0	0.0	0.0	0.0	8.0	2.5
Merged-chr2-91495453-4	chr2	91494958	91495958	+	858.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 28 of 37)	intron (NM_172668, intron 28 of 37)	-31304.0	NM_001165989	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	15.5	23.5	9.5	11.0	40.0	15.5
Merged-chr12-40565015-4	chr12	40564519	40565519	+	858.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	118966.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43579940-2	chr13	43579440	43580440	+	858.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19749.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167014440-2	chr2	167013939	167014939	+	858.625	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153065)	promoter-TSS (NM_153065)	-874.0	NM_153065	228889.0	Mm.295031	NM_153065	ENSMUSG00000017999	Ddx27	C86129	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32866917-4	chr16	32866472	32867472	+	858.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172615, intron 1 of 18)	intron (NM_172615, intron 1 of 18)	1394.0	NM_001200038	100502698.0	Mm.327319	NM_172615	ENSMUSG00000035629	Rubcn	1700021K19Rik|5330403K09|Rubicon|mKIAA0226	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	protein-coding	31.0	59.5	60.5	36.5	81.0	70.5
Merged-chr13-34345105-6	chr13	34344589	34345589	+	858.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033167)	promoter-TSS (NM_001033167)	93.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83632035-4	chr17	83631540	83632540	+	858.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153512)	promoter-TSS (NM_153512)	-145.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119363763-4	chr11	119363263	119364263	+	858.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178743, intron 6 of 16)	intron (NM_178743, intron 6 of 16)	8206.0	NM_178743	268512.0	Mm.31869	NM_178743	ENSMUSG00000039908	Slc26a11	F630021I08Rik	solute carrier family 26, member 11	protein-coding	0.0	0.0	1.0	0.0	1.5	1.5
Merged-chr4-154934195-3	chr4	154933696	154934696	+	858.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6119.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	27.5	26.5	10.5	8.0	31.5	14.0
Merged-chr5-140388034-6	chr5	140387512	140388512	+	858.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172277, intron 1 of 10)	intron (NM_172277, intron 1 of 10)	1296.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55513057-4	chr1	55512534	55513534	+	858.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	107088.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	14.5	8.0	27.0	4.0	4.0	4.0
Merged-chr4-139602846-4	chr4	139602355	139603355	+	858.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	-20039.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	5.0	18.0	19.0	0.0	5.5	3.5
Merged-chr11-32329363-2	chr11	32328863	32329863	+	858.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11B|LTR|ERVK	-18448.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5218188-2	chr17	5217688	5218688	+	858.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	200579.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-105383591-2	chr14	105383091	105384091	+	858.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-43968.0	NR_045859	71362.0	Mm.410781	NR_045859	ENSMUSG00000115548	5430440P10Rik	-	RIKEN cDNA 5430440P10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79777260-3	chr10	79776775	79777775	+	858.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031380)	promoter-TSS (NM_031380)	1.0	NM_031380	83554.0	Mm.251710	NM_031380	ENSMUSG00000020325	Fstl3	E030038F23Rik|Flrg	follistatin-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36100936-2	chr1	36100436	36101436	+	858.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	32536.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-45451205-2	chr5	45450705	45451705	+	858.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024236)	promoter-TSS (NM_024236)	-976.0	NM_024236	110391.0	Mm.30204	NM_024236	ENSMUSG00000015806	Qdpr	2610008L04Rik|D5Ertd371e|Dhpr|PKU2	quinoid dihydropteridine reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140624043-2	chr5	140623543	140624543	+	858.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308040, intron 12 of 12)	intron (NM_001308040, intron 12 of 12)	16702.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-22483921-2	chr15	22483445	22484445	+	858.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	231039.0	NM_001165971	545091.0	Mm.475598	NM_001165971		Hnrnpa1l2-ps2	EG545091|Gm5803	heterogeneous nuclear ribonucleoprotein A1-like 2, pseudogene 2	protein-coding	2.0	7.5	5.0	1.5	3.0	1.5
Merged-chr12-85669277-2	chr12	85668777	85669777	+	858.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17443.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154942845-4	chr4	154942355	154943355	+	858.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14778.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	24.5	78.0	53.0	99.0	257.5	150.5
Merged-chr5-115479782-2	chr5	115479282	115480282	+	858.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001167691, exon 4 of 5)	exon (NM_001167691, exon 4 of 5)	4515.0	NM_001167691	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	7.5	13.0	22.0	10.5	35.0	36.0
Merged-chr16-93796690-2	chr16	93796190	93797190	+	858.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027293, intron 27 of 36)	intron (NM_027293, intron 27 of 36)	-1789.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-113664775-2	chr8	113664275	113665275	+	858.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11683.0	NR_136914	102631810.0	Mm.412563	NR_136914	ENSMUSG00000110582	Gm30052	-	predicted gene, 30052	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53315275-2	chr18	53314775	53315775	+	858.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	MTC|LTR|ERVL-MaLR	69613.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85270766-2	chr11	85270266	85271266	+	858.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	35600.0	NR_028329	654810.0	Mm.209580	NR_028329	ENSMUSG00000085628	Appbp2os	D630032N06Rik	amyloid beta precursor protein (cytoplasmic tail) binding protein 2, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131223447-2	chr2	131222947	131223947	+	858.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10616.0	NM_001206383	228607.0	Mm.287226	NM_144888	ENSMUSG00000037523	Mavs	D430028G21Rik|IPS-1|Visa|cardif	mitochondrial antiviral signaling protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31586672-4	chr15	31586181	31587181	+	858.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181588, intron 4 of 5)	intron (NM_181588, intron 4 of 5)	14858.0	NM_001348035	12465.0	Mm.282158	NM_007637	ENSMUSG00000022234	Cct5	CCT-epsilon|Ccte|TCP-1-epsilon|TCPE|mKIAA0098	chaperonin containing Tcp1, subunit 5 (epsilon)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-8660418-2	chr8	8659918	8660918	+	858.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010111, intron 1 of 4)	CpG	355.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128542807-2	chr10	128542307	128543307	+	858.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_134003)	TTS (NM_134003)	4937.0	NM_134003	103284.0	Mm.68289	NM_134003	ENSMUSG00000039810	Zc3h10	AI790326	zinc finger CCCH type containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121316097-2	chr9	121315597	121316597	+	858.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	18595.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15397011-2	chr17	15396511	15397511	+	858.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357822, intron 1 of 10)	intron (NM_001357822, intron 1 of 10)	765.0	NM_024203	67544.0	Mm.35039	NM_024203	ENSMUSG00000014763	Fam120b	4932442K08Rik|AW049283|AW413338|CCPG|Pgcc1|mKIAA1838	family with sequence similarity 120, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-137865228-2	chr1	137864728	137865728	+	858.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-101227.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64345229-2	chr5	64344729	64345729	+	858.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 17 of 18)	intron (NM_001289514, intron 17 of 18)	114872.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	13.5	93.0	48.0	21.0	30.5	24.5
Merged-chr14-20719179-2	chr14	20718679	20719679	+	858.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001252081, exon 18 of 26)	exon (NM_001252081, exon 18 of 26)	11627.0	NM_001252082	268721.0	Mm.275082	NM_027996	ENSMUSG00000021819	Zswim8	2310021P13Rik|4832404P21Rik|Kiaa0913|mKIAA0913	zinc finger SWIM-type containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-48869897-2	chr11	48869397	48870397	+	858.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008326, intron 1 of 2)	intron (NM_008326, intron 1 of 2)	1523.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21196989-2	chr5	21196481	21197481	+	858.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 3 of 26)	L1_Mus2|LINE|L1	10714.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-44925716-2	chr2	44925216	44926216	+	858.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64094.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30695372-4	chr13	30694865	30695865	+	858.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134068, intron 3 of 7)	intron (NM_134068, intron 3 of 7)	35306.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-119472869-4	chr6	119472350	119473350	+	858.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009525, intron 1 of 4)	ERVL-int|LTR|ERVL	-5639.0	NM_001271758	22419.0	Mm.321818	NM_009525	ENSMUSG00000030170	Wnt5b	AW545702|Wnt-5b	wingless-type MMTV integration site family, member 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-105483145-4	chr14	105482644	105483644	+	858.4458619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15644.0	NR_045921	74864.0	Mm.159344	NR_045921	ENSMUSG00000022116	4930449E01Rik	-	RIKEN cDNA 4930449E01 gene	ncRNA	6.0	4.5	3.0	3.0	9.0	2.5
Merged-chr14-18731220-3	chr14	18730720	18731720	+	858.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360327, intron 3 of 5)	intron (NM_001360327, intron 3 of 5)	162193.0	NM_001360328	218793.0	Mm.23551	NM_144839	ENSMUSG00000058317	Ube2e2	BC016265	ubiquitin-conjugating enzyme E2E 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137358408-3	chr4	137357925	137358925	+	858.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243769)	promoter-TSS (NM_001243769)	-666.0	NM_001243769	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	0.0	4.0	7.5	0.0	0.0	5.0
Merged-chr11-11553786-3	chr11	11553284	11554284	+	858.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	64518.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	0.0	16.0	6.0	0.5	0.0	1.5
Merged-chr10-18188739-4	chr10	18188226	18189226	+	858.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195036, intron 3 of 20)	L1MC5|LINE|L1	22164.0	NM_001195036	100045792.0	Mm.380617	NM_001195036	ENSMUSG00000071392	Ect2l	C330021H03Rik|Gm10331	epithelial cell transforming sequence 2 oncogene-like	protein-coding	0.0	5.0	0.5	0.0	1.5	3.0
Merged-chr8-33618040-4	chr8	33617546	33618546	+	858.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017374, intron 6 of 6)	B3|SINE|B2	18425.0	NM_017374	19053.0	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	8.5	24.0	16.0	9.5	7.5	1.5
Merged-chr11-50827786-4	chr11	50827283	50828283	+	858.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013922)	promoter-TSS (NM_013922)	-52.0	NM_013922	30944.0	Mm.103674	NM_013922	ENSMUSG00000044807	Zfp354c	5330421P20Rik|AJ18|AW743325|Kid3|Tcf17l2|Znf354c|mKIAA4218	zinc finger protein 354C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34770194-4	chr2	34769625	34770625	+	858.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-1965.0	NM_001163434	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84012594-4	chr8	84012097	84013097	+	858.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291292)	promoter-TSS (NM_001291292)	-877.0	NM_001291292	70134.0	Mm.41017	NM_001291292	ENSMUSG00000074217	2210011C24Rik	-	RIKEN cDNA 2210011C24 gene	protein-coding	0.0	0.5	0.0	0.0	3.0	3.5
Merged-chr11-75514501-3	chr11	75514009	75515009	+	858.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004157, intron 3 of 10)	intron (NM_001004157, intron 3 of 10)	968.0	NM_001004157	380713.0	Mm.10486	NM_001004157	ENSMUSG00000038188	Scarf1	AA986099|SREC|SREC-I|mKIAA0149	scavenger receptor class F, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55158994-4	chr11	55158504	55159504	+	858.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153170, exon 10 of 10)	3' UTR (NM_153170, exon 10 of 10)	-7298.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136602224-4	chr4	136601775	136602775	+	858.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347221, exon 1 of 20)	exon (NM_001347221, exon 1 of 20)	448.0	NM_001356567	99982.0	Mm.28540	NM_133872	ENSMUSG00000036940	Kdm1a	1810043O07Rik|AA408884|Aof2|D4Ertd478e|Kdm1|Lsd1|mKIAA0601	lysine (K)-specific demethylase 1A	protein-coding	11.0	20.0	10.0	13.0	15.5	19.5
Merged-chr13-30767925-4	chr13	30767436	30768436	+	858.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013674)	TTS (NM_013674)	18703.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122548825-4	chr5	122548315	122549315	+	858.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46590.0	NR_027838	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-138742229-4	chr3	138741702	138742702	+	858.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019571)	promoter-TSS (NM_019571)	-6.0	NR_121195	56224.0	Mm.31927	NM_019571	ENSMUSG00000028152	Tspan5	2810455A09Rik|4930505M03Rik|NET-4|Tm4sf9	tetraspanin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-181228577-4	chr1	181228051	181229051	+	858.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16573.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115650195-2	chr5	115649695	115650695	+	858.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080808, intron 8 of 8)	intron (NM_001080808, intron 8 of 8)	3391.0	NR_151601	75665.0	Mm.233914	NM_001080808	ENSMUSG00000041609	Bicdl1	2210403N09Rik|BICDR-1|Ccdc64	BICD family like cargo adaptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47779632-3	chr6	47779172	47780172	+	858.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23980.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	1.5	10.0	0.5	1.0	7.0	0.5
Merged-chr12-102440834-3	chr12	102440327	102441327	+	858.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1014.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-129746885-3	chr7	129746404	129747404	+	858.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER44C|DNA|TcMar-Tigger	155041.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4058776-4	chr19	4058261	4059261	+	858.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001362043, exon 2 of 6)	exon (NM_001362043, exon 2 of 6)	686.0	NM_144869	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139995008-3	chr7	139994548	139995548	+	858.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133755)	TTS (NM_133755)	-2486.0	NM_001291066	11501.0	Mm.15969	NM_007403	ENSMUSG00000025473	Adam8	ADAM 8|CD156|CD156a|E430039A18Rik|MS2	a disintegrin and metallopeptidase domain 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84073967-2	chr15	84073467	84074467	+	858.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8618.0	NM_029946	77627.0	Mm.196288	NM_029946	ENSMUSG00000022441	Efcab6	4931407K02Rik|4932408N08Rik|bM150J22.2|mKIAA1672	EF-hand calcium binding domain 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128651345-2	chr6	128650845	128651845	+	858.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_2-LTR_MM|LTR|ERVK	-11040.0	NM_053165	94071.0	Mm.197689	NM_053165	ENSMUSG00000030364	Clec2h	Clrf|clr-f	C-type lectin domain family 2, member h	protein-coding	0.0	0.0	3.0	0.0	5.0	4.5
Merged-chr8-119380798-3	chr8	119380310	119381310	+	858.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-14082.0	NM_019966	56690.0	Mm.423037	NM_019966	ENSMUSG00000074064	Mlycd	AI324784|Mcd	malonyl-CoA decarboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11278988-4	chr2	11278528	11279528	+	858.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 13 of 17)	intron (NM_008859, intron 13 of 17)	-60461.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62600706-3	chr4	62600211	62601211	+	858.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019492, intron 3 of 19)	intron (NM_019492, intron 3 of 19)	-18961.0	NM_001081650	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96601530-3	chr3	96601036	96602036	+	858.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163170, intron 1 of 5)	intron (NM_001163170, intron 1 of 5)	403.0	NM_001163170	280411.0	Mm.482147	NM_001163170	ENSMUSG00000049288	Lix1l	D130027M04Rik	Lix1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90212270-3	chr7	90211758	90212758	+	858.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53174.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35392947-3	chr17	35392453	35393453	+	858.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-1146.0	NR_051981	15016.0	Mm.439648	NR_051981	ENSMUSG00000055413	H2-Q5	H-2Q5|Qa-5|Qa5|Qat-5	histocompatibility 2, Q region locus 5	pseudo	0.5	3.0	0.5	0.0	0.0	0.0
Merged-chr1-87174461-3	chr1	87173964	87174964	+	858.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8850.0	NM_027084	69453.0	Mm.84618	NM_027084	ENSMUSG00000036480	Prss56	1700027L20Rik	protease, serine 56	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84010037-3	chr8	84009542	84010542	+	858.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291292)	TTS (NM_001291292)	1591.0	NR_035431	100316677.0		NR_035431	ENSMUSG00000080665	Mir1199	Mirn1199|mir-1199|mmu-mir-1199	microRNA 1199	ncRNA	4.0	5.5	2.0	9.0	0.0	2.0
Merged-chr14-67935589-3	chr14	67935069	67936069	+	858.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1997.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-69813397-3	chr14	69812904	69813904	+	858.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7859.0	NM_153514	246710.0	Mm.102367	NM_153514	ENSMUSG00000022075	Rhobtb2	Dbc2|E130206H14Rik|mKIAA0717	Rho-related BTB domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-46607463-3	chr7	46606954	46607954	+	858.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013789, intron 8 of 10)	intron (NM_013789, intron 8 of 10)	32353.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-163900345-3	chr1	163899836	163900836	+	858.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305643, intron 19 of 19)	intron (NM_001305643, intron 19 of 19)	-28764.0	NM_001286002	240880.0	Mm.389213	NM_028776	ENSMUSG00000026584	Scyl3	1200016D23Rik|6030457O16|AW214499|Pace1	SCY1-like 3 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-14698113-4	chr9	14697647	14698647	+	858.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	35125.0	NR_152172	665374.0	Mm.387249	NR_152172	ENSMUSG00000111085	Gm7607	EG665374	predicted gene 7607	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46487521-4	chr4	46487014	46488014	+	858.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1815.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-10474436-4	chr10	10473949	10474949	+	858.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-2135.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	16.5	22.0	5.5	6.5	9.0	3.5
Merged-chr18-69299847-4	chr18	69299347	69300347	+	858.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44645.0	NM_013685	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	13.0	5.0	5.5	3.0	9.0	5.0
Merged-chr4-43728743-3	chr4	43728262	43729262	+	858.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027511)	TTS (NM_027511)	-1272.0	NM_001348108	71406.0	Mm.33063	NM_027789	ENSMUSG00000028475	Spaar	5430416O09Rik|AI481365|Spar	small regulatory polypeptide of amino acid response	protein-coding	0.0	0.0	0.0	0.0	1.0	4.0
Merged-chr15-7226438-3	chr15	7225934	7226934	+	858.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289496, intron 17 of 22)	intron (NM_001289496, intron 17 of 22)	85892.0	NM_013584	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32864995-2	chr2	32864495	32865495	+	858.275024	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-11139.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-104697965-3	chr4	104697475	104698475	+	858.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177259, intron 9 of 14)	intron (NM_177259, intron 9 of 14)	-68342.0	NM_133882	110382.0	Mm.87072	NM_133882	ENSMUSG00000029656	C8b	4930439B20Rik|AI595927	complement component 8, beta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-127168507-3	chr4	127168017	127169017	+	858.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198618)	promoter-TSS (NM_198618)	-687.0	NM_198618	242667.0	Mm.331885	NM_198618	ENSMUSG00000042388	Dlgap3	BC058433|DAP-3|DAP3|Prpl8|Sapap3	DLG associated protein 3	protein-coding	2.5	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53269733-2	chr18	53269233	53270233	+	858.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	24071.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-136896456-3	chr3	136895941	136896941	+	858.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 8 of 13)	intron (NM_008913, intron 8 of 13)	226375.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-17433140-4	chr14	17432627	17433627	+	858.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-227833.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74967772-2	chr15	74967280	74968280	+	858.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12674.0	NM_001164040	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	64.5	170.5	85.5	89.5	186.0	122.5
Merged-chr13-41461767-4	chr13	41461271	41462271	+	858.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	25589.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-23140254-4	chr19	23139756	23140756	+	858.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010638)	promoter-TSS (NM_010638)	-970.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83097832-4	chr15	83097331	83098331	+	858.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2374.0	NM_023475	68607.0	Mm.30056	NM_023475	ENSMUSG00000058586	Serhl	0610008B10Rik|1110019M09Rik|AU019786	serine hydrolase-like	protein-coding	0.5	0.0	0.0	0.0	0.5	8.0
Merged-chr17-65724440-4	chr17	65723951	65724951	+	858.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	48301.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25607608-4	chr14	25607060	25608060	+	858.24585	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 6 of 23)	CpG	4047.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	16.0	12.5	3.0	0.5	10.5	5.0
Merged-chr3-65882381-3	chr3	65881952	65882952	+	858.238098	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	75797.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122476206-6	chr14	122475802	122476802	+	858.2222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009574, exon 1 of 3)	exon (NM_009574, exon 1 of 3)	918.0	NM_009574	22772.0	Mm.308936	NM_009574	ENSMUSG00000061524	Zic2	HPE5|Ku	zinc finger protein of the cerebellum 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99139416-3	chr7	99138918	99139918	+	858.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 1 of 14)	intron (NM_178635, intron 1 of 14)	1726.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	22.0	39.5	29.5	22.5	36.5	32.5
Merged-chr16-32666425-4	chr16	32665929	32666929	+	858.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033493, exon 2 of 3)	non-coding (NR_033493, exon 2 of 3)	1768.0	NR_033493	675921.0	Mm.404316	NR_033493	ENSMUSG00000075265	Tnk2os	Gm10818	tyrosine kinase, non-receptor 2, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-20939239-4	chr1	20938750	20939750	+	858.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028829, exon 3 of 3)	3' UTR (NM_028829, exon 3 of 3)	-12376.0	NM_027974	71877.0	Mm.29178	NM_027974	ENSMUSG00000041809	Efhc1	1700029F22Rik|mRib72-1|myoclonin1	EF-hand domain (C-terminal) containing 1	protein-coding	5.5	1.0	0.0	7.5	13.0	7.0
Merged-chr5-120587296-2	chr5	120586796	120587796	+	858.1999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_145853, intron 1 of 27)	intron (NM_145853, intron 1 of 27)	1317.0	NM_145853	252972.0	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150668051-5	chr2	150667525	150668525	+	858.1866460000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_080575, exon 1 of 14)	exon (NM_080575, exon 1 of 14)	215.0	NM_080575	68738.0	Mm.7044	NM_080575	ENSMUSG00000027452	Acss1	1110032O15Rik|AI788978|Acas2|Acas2l|AceCS2	acyl-CoA synthetase short-chain family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83463033-3	chr11	83462520	83463520	+	858.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172797)	promoter-TSS (NM_172797)	20.0	NM_172797	118453.0	Mm.264648	NM_080453	ENSMUSG00000020682	Mmp28	D130023P12	matrix metallopeptidase 28 (epilysin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-63024755-3	chr10	63024241	63025241	+	858.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001079824)	promoter-TSS (NM_001079824)	229.0	NM_026085	67307.0	Mm.368563	NM_026085	ENSMUSG00000020072	Pbld2	3110049J23Rik|Mawbp	phenazine biosynthesis-like protein domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-117905482-4	chr6	117904985	117905985	+	858.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166432, intron 1 of 3)	intron (NM_001166432, intron 1 of 3)	-1297.0	NM_001166430	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-56152036-3	chr13	56151536	56152536	+	858.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16486.0	NM_001159513	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	1.0	7.0	5.0	0.5	6.0	3.5
Merged-chr17-40763845-4	chr17	40763344	40764344	+	858.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009420)	TTS (NM_009420)	30302.0	NM_001204071	22024.0	Mm.1296	NM_009420	ENSMUSG00000023930	Crisp2	CRISP-2|GAPDL5|Tpx-1|Tpx1	cysteine-rich secretory protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-92965299-4	chr7	92964799	92965799	+	858.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90046.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr18-84854073-4	chr18	84853519	84854519	+	858.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348159, intron 1 of 5)	intron (NM_001348159, intron 1 of 5)	2681.0	NM_001348159	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63159154-3	chr4	63158668	63159668	+	858.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4996.0	NM_007443	11699.0	Mm.2197	NM_007443	ENSMUSG00000028356	Ambp	AI194774|ASPI|HI-30|Intin4|Itil|UTI	alpha 1 microglobulin/bikunin	protein-coding	2.5	0.0	2.5	0.0	0.0	0.5
Merged-chr7-19746958-5	chr7	19746417	19747417	+	858.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008990, intron 1 of 8)	intron (NM_008990, intron 1 of 8)	2656.0	NM_008990	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150895144-3	chr2	150894666	150895666	+	858.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 1 of 12)	B4A|SINE|B4	9565.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180920096-4	chr2	180919563	180920563	+	858.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173761, intron 2 of 4)	intron (NM_173761, intron 2 of 4)	873.0	NM_173761	228994.0	Mm.30205	NM_173761	ENSMUSG00000038848	Ythdf1	2210410K23Rik|8030473O16	YTH domain family 1	protein-coding	14.5	54.5	72.5	26.0	87.0	69.5
Merged-chr2-167241152-4	chr2	167240648	167241648	+	858.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008968)	promoter-TSS (NM_008968)	-611.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117140886-2	chr4	117140386	117141386	+	858.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-6923.0	NM_001313916	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	7.0	0.0	4.0	5.0	4.5	4.0
Merged-chr8-119345189-2	chr8	119344689	119345689	+	858.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_024219, intron 2 of 3)	B3A|SINE|B2	651.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6346753-2	chr19	6346253	6347253	+	858.125	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105955)	TTS (NR_105955)	273.0	NR_105955	102465598.0		NR_105955	ENSMUSG00000099230	Mir6989	Gm27885|mmu-mir-6989	microRNA 6989	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55469353-3	chr13	55468858	55469858	+	858.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001030296, intron 1 of 2)	intron (NM_001030296, intron 1 of 2)	5091.0	NM_001030296	432763.0	Mm.315457	NM_001030296	ENSMUSG00000034686	Prr7	XM_484263	proline rich 7 (synaptic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72136391-3	chr8	72135896	72136896	+	858.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001491, intron 1 of 7)	intron (NM_001001491, intron 1 of 7)	1104.0	NM_001001491	326618.0	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	37.5	34.0	28.0	24.0	40.0	24.5
Merged-chr16-91860667-2	chr16	91860167	91861167	+	858.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 24 of 28)	intron (NM_001110275, intron 24 of 28)	70963.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113061356-4	chr6	113060844	113061844	+	858.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008188, intron 5 of 9)	intron (NM_008188, intron 5 of 9)	15042.0	NM_008188	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47781280-4	chr6	47780781	47781781	+	858.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22371.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	58.0	144.0	164.0	41.0	154.5	129.0
Merged-chr13-52258636-4	chr13	52258149	52259149	+	858.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	161908.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67381997-7	chr17	67381432	67382432	+	858.0714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-27441.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	12.5	1.0	2.0	0.0	20.0	5.0
Merged-chr19-28975467-3	chr19	28974965	28975965	+	858.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11311.0	NM_198651	381218.0	Mm.280653	NM_198651	ENSMUSG00000064202	4430402I18Rik	AW122618|Spata6l	RIKEN cDNA 4430402I18 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-24630415-4	chr12	24629904	24630904	+	858.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20967.0	NM_178357	194655.0	Mm.9616	NM_178357	ENSMUSG00000020653	Klf11	9830142A17|D12Ertd427e|Tieg2|Tieg2b|Tieg3	Kruppel-like factor 11	protein-coding	0.0	8.0	2.0	0.0	5.0	0.0
Merged-chr9-124118679-4	chr9	124118198	124119198	+	858.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2845.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86421601-3	chr4	86421114	86422114	+	858.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029967, intron 25 of 27)	Lx8|LINE|L1	136689.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135921587-3	chr4	135921099	135922099	+	858.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024243, intron 1 of 7)	intron (NM_024243, intron 1 of 7)	873.0	NM_024243	71665.0	Mm.439940	NM_024243	ENSMUSG00000028673	Fuca1	0610006A03Rik|9530055J05Rik|Afuc|Fuca	fucosidase, alpha-L- 1, tissue	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3808440-4	chr12	3808013	3809013	+	858.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	1353.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81393663-4	chr10	81393168	81394168	+	858.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099917, intron 1 of 3)	intron (NM_001099917, intron 1 of 3)	604.0	NM_001099917	72273.0	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91610476-2	chr16	91609976	91610976	+	858.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	8523.0	NM_001099738	246738.0	Mm.101927	NM_138664	ENSMUSG00000039763	Dnajc28	BC020175|ORF28	DnaJ heat shock protein family (Hsp40) member C28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99583899-3	chr15	99583373	99584373	+	858.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009699, exon 4 of 4)	exon (NM_009699, exon 4 of 4)	4817.0	NM_009699	11827.0	Mm.20206	NM_009699	ENSMUSG00000023013	Aqp2	AQP-CD|WCH-CD|cph|jpk	aquaporin 2	protein-coding	0.0	1.5	0.5	5.0	1.5	2.0
Merged-chr7-45026810-1	chr7	45026310	45027310	+	858.0	f1_c57bl6.idr	TTS (NM_175022)	TTS (NM_175022)	7213.0	NM_001360133	20130.0	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	9.5	10.5	2.5	11.0	12.0	12.5
Merged-chr14-47360631-1	chr14	47360131	47361131	+	858.0	f0_balb.idr	Intergenic	Intergenic	-13229.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	124.0	262.0	219.5	49.5	102.5	155.0
Merged-chr3-104963586-2	chr3	104963086	104964086	+	858.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-1877.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138944461-1	chr4	138943961	138944961	+	858.0	f1_c57bl6.idr	Intergenic	Intergenic	-22651.0	NM_025786	66825.0	Mm.252312	NM_025786	ENSMUSG00000070661	Rnf186	9130020G10Rik	ring finger protein 186	protein-coding	29.5	53.0	46.5	26.5	45.5	43.5
Merged-chr16-75831565-3	chr16	75831048	75832048	+	858.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64730.0	NM_030201	110920.0	Mm.26704	NM_030201	ENSMUSG00000032932	Hspa13	1600002I10Rik|AV006182|B230217N24Rik|Stch	heat shock protein 70 family, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65671706-3	chr9	65671210	65672210	+	858.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4838.0	NM_010952	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	2.5	1.0	2.0	5.5	8.0	0.0
Merged-chr5-140536808-3	chr5	140536334	140537334	+	858.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28233.0	NM_030022	77998.0	Mm.160040	NM_030022	ENSMUSG00000036586	Grifin	E130101O17Rik	galectin-related inter-fiber protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-69660879-1	chr13	69660379	69661379	+	858.0	f0_balb.idr	Intergenic	Intergenic	48863.0	NM_145354	28114.0	Mm.260009	NM_145354	ENSMUSG00000021595	Nsun2	D13Wsu123e|Misu	NOL1/NOP2/Sun domain family member 2	protein-coding	4.0	3.0	2.0	2.0	3.0	6.0
Merged-chr7-126848720-2	chr7	126848220	126849220	+	858.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010069, exon 2 of 11)	exon (NM_010069, exon 2 of 11)	1167.0	NM_010069	13446.0	Mm.266301	NM_010069	ENSMUSG00000052301	Doc2a	-	double C2, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90501867-3	chr2	90501368	90502368	+	858.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-22694.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-133511092-2	chr2	133510592	133511592	+	858.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41067.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61045235-2	chr18	61044735	61045735	+	858.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146268)	promoter-TSS (NM_001146268)	85.0	NM_008809	18596.0	Mm.4146	NM_008809	ENSMUSG00000024620	Pdgfrb	AI528809|CD140b|PDGFR-1|Pdgfr	platelet derived growth factor receptor, beta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-21534115-2	chr17	21533615	21534615	+	858.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_131123, intron 2 of 2)	intron (NR_131123, intron 2 of 2)	-1424.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	0.0	1.5	5.5	1.5	0.5	4.0
Merged-chr16-94600047-2	chr16	94599547	94600547	+	858.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-11372.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-105010581-3	chr12	105010066	105011066	+	858.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172500)	promoter-TSS (NM_172500)	-757.0	NM_172500	212073.0	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	KASH3|nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42086281-2	chr19	42085781	42086781	+	858.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198108)	promoter-TSS (NM_198108)	89.0	NM_198108	226123.0	Mm.259441	NM_198108	ENSMUSG00000049670	Morn4	-	MORN repeat containing 4	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr7-28803454-3	chr7	28802938	28803938	+	858.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-7452.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	8.5	4.0	1.5	0.0	0.0	0.5
Merged-chr2-90465438-2	chr2	90464938	90465938	+	858.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 5 of 23)	intron (NM_008982, intron 5 of 23)	13736.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-43545387-2	chr16	43544887	43545887	+	858.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 3 of 6)	intron (NM_181058, intron 3 of 6)	-95268.0	NR_030576	100124467.0		NR_030576	ENSMUSG00000076372	Mir568	Mirn568|mmu-mir-568	microRNA 568	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120404678-3	chr8	120404137	120405137	+	858.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84229.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-25721706-3	chr3	25721190	25722190	+	858.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357095, intron 4 of 6)	intron (NM_001357095, intron 4 of 6)	432296.0	NM_001163387	192167.0	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35326732-2	chr2	35326232	35327232	+	858.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013515, intron 1 of 6)	intron (NM_013515, intron 1 of 6)	10277.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9766502-2	chr13	9766002	9767002	+	858.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1181.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141464674-3	chr7	141464124	141465124	+	858.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152220)	promoter-TSS (NR_152220)	-720.0	NR_152220	100126795.0	Mm.386851	NR_152219	ENSMUSG00000073787	Gm10575	-	predicted gene 10575	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-45669045-3	chr5	45668557	45669557	+	858.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019438)	promoter-TSS (NM_019438)	651.0	NR_073433	69788.0	Mm.381492	NR_073433	ENSMUSG00000104986	1600023N17Rik	AV119442	RIKEN cDNA 1600023N17 gene	ncRNA	15.0	23.5	36.0	11.0	25.0	22.0
Merged-chr3-6549501-2	chr3	6549042	6550042	+	858.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	70901.0	NM_027048	69347.0	Mm.45822	NM_027048	ENSMUSG00000069118	1700008P02Rik	-	RIKEN cDNA 1700008P02 gene	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr7-43639533-2	chr7	43639033	43640033	+	858.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028236, intron 3 of 5)	intron (NM_028236, intron 3 of 5)	4794.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59952507-3	chr10	59951985	59952985	+	858.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029083)	promoter-TSS (NM_029083)	-715.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5102522-3	chr6	5102023	5103023	+	858.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 7 of 15)	intron (NM_181595, intron 7 of 15)	91423.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-23851401-3	chr5	23850901	23851901	+	858.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028536)	promoter-TSS (NR_028536)	804.0	NR_045040	67194.0	Mm.423733	NR_045040	ENSMUSG00000097180	2700038G22Rik	-	RIKEN cDNA 2700038G22 gene	ncRNA	45.5	84.0	74.5	12.0	18.5	7.0
Merged-chr8-83607524-2	chr8	83607024	83608024	+	858.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018808)	promoter-TSS (NM_018808)	-651.0	NM_018808	81489.0	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	28.5	58.0	58.5	26.5	48.5	47.0
Merged-chr6-13597340-2	chr6	13596862	13597862	+	858.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155435, intron 1 of 3)	intron (NR_155435, intron 1 of 3)	10736.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	0.0	12.5	8.5	5.5	7.5	5.0
Merged-chr18-60777923-2	chr18	60777423	60778423	+	858.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020600, intron 4 of 4)	intron (NM_020600, intron 4 of 4)	3327.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	5.0	0.0	3.5	3.5	0.0	0.0
Merged-chr8-106612282-1	chr8	106611782	106612782	+	858.0	f0_balb.idr	intron (NM_009864, intron 2 of 15)	ID2|SINE|ID	8932.0	NM_009864	12550.0	Mm.35605	NM_009864	ENSMUSG00000000303	Cdh1	AA960649|ARC-1|E-cad|Ecad|L-CAM|UVO|Um	cadherin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104061975-2	chr9	104061475	104062475	+	858.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025692, intron 1 of 11)	intron (NM_025692, intron 1 of 11)	1146.0	NM_025692	66663.0	Mm.224935	NM_025692	ENSMUSG00000032557	Uba5	5730525G14Rik|AW240750|Ube1dc1	ubiquitin-like modifier activating enzyme 5	protein-coding	0.5	4.0	2.5	0.5	4.0	2.5
Merged-chr9-99096841-3	chr9	99096345	99097345	+	858.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 4 of 23)	intron (NM_029094, intron 4 of 23)	43366.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34658300-2	chr5	34657800	34658800	+	858.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029278, intron 1 of 17)	intron (NM_029278, intron 1 of 17)	1848.0	NM_029278	75416.0	Mm.40292	NM_029278	ENSMUSG00000036693	Nop14	2610033H07Rik|Nol14	NOP14 nucleolar protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-67375199-1	chr13	67374699	67375699	+	858.0	f1_c57bl6.idr	intron (NM_001001186, intron 1 of 3)	intron (NM_001001186, intron 1 of 3)	564.0	NM_001001186	408065.0	Mm.461583	NM_001001186	ENSMUSG00000078995	Zfp456	BC065418|Rslcan-13	zinc finger protein 456	protein-coding	52.0	207.5	72.0	2.5	5.5	7.0
Merged-chr14-55763643-5	chr14	55763142	55764142	+	858.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_020490)	TTS (NM_020490)	2214.0	NM_020490	57260.0	Mm.159670	NM_020490	ENSMUSG00000040432	Ltb4r2	5830462O07Rik|BLT2|LTB4-R 2|LTB4-R-2|LTB4-R2	leukotriene B4 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7240143-3	chr9	7239653	7240653	+	858.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32361.0	NM_008607	17386.0	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160060745-2	chr2	160060245	160061245	+	858.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44092.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-68823731-2	chr5	68823231	68824231	+	858.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	517978.0	NM_175519	243043.0	Mm.234821	NM_175519	ENSMUSG00000037653	Kctd8	A730087N02Rik	potassium channel tetramerisation domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-66826503-4	chr4	66825987	66826987	+	857.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1064.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	4.0	10.5	13.0	10.0	14.5	17.0
Merged-chr3-97868247-4	chr3	97867730	97868730	+	857.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 1 of 46)	CpG	20477.0	NM_001289702	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3426080-4	chr12	3425545	3426545	+	857.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172421)	promoter-TSS (NM_172421)	702.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111090298-4	chr8	111089827	111090827	+	857.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4418.0	NM_198308	319518.0	Mm.28350	NM_198308	ENSMUSG00000033624	Pdpr	4930402E16Rik|AU018056|mKIAA1990	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44819555-3	chr13	44819027	44820027	+	857.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205043, intron 1 of 17)	intron (NM_001205043, intron 1 of 17)	88256.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-108043159-3	chr13	108042643	108043643	+	857.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1331.0	NM_001048250	75616.0	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	12.5	8.0	5.0	6.5	6.0	4.5
Merged-chr9-47627035-4	chr9	47626526	47627526	+	857.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	96674.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	70.5	234.0	160.0	120.5	237.0	168.5
Merged-chr3-9250725-4	chr3	9250242	9251242	+	857.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177660, exon 1 of 6)	5' UTR (NM_177660, exon 1 of 6)	175.0	NM_177660	229055.0	Mm.103262	NM_177660	ENSMUSG00000069114	Zbtb10	4832414A18|AU021107|RINZF	zinc finger and BTB domain containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-55429467-3	chr9	55428977	55429977	+	857.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172923, intron 8 of 10)	intron (NM_172923, intron 8 of 10)	82766.0	NM_145615	110842.0	Mm.290853	NM_145615	ENSMUSG00000032314	Etfa	2010200I21Rik|D9Ertd394e	electron transferring flavoprotein, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123699393-3	chr5	123698881	123699881	+	857.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027494, exon 14 of 14)	3' UTR (NM_027494, exon 14 of 14)	-15020.0	NM_001359222	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	0.0	4.0	2.0	4.0	4.5	1.0
Merged-chr6-22398237-3	chr6	22397746	22398746	+	857.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42165.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59002369-4	chr13	59001867	59002867	+	857.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	194670.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	5.0	19.5	3.0	0.0	13.0	17.0
Merged-chr6-5379296-4	chr6	5378807	5379807	+	857.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4079.0	NM_023048	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	0.5	0.0	4.0	0.5	0.0	3.5
Merged-chr4-138038620-4	chr4	138038109	138039109	+	857.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	40784.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	10.0	29.5	20.5	10.5	42.5	22.5
Merged-chr14-62893467-4	chr14	62892896	62893896	+	857.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 2 of 11)	intron (NM_175546, intron 2 of 11)	27854.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	10.0	10.0	2.5	0.0	2.0	8.5
Merged-chr11-46431385-4	chr11	46430881	46431881	+	857.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5566.0	NM_001104557	66213.0	Mm.24159	NM_025426	ENSMUSG00000020397	Med7	1110063B05Rik|Crsp33|Crsp9	mediator complex subunit 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16149271-4	chr19	16148779	16149779	+	857.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	-14819.0	NR_033228	595139.0	Mm.405662	NR_033228		E030024N20Rik	9030417F11Rik|Ppia-ps8	peptidylprolyl isomerase A pseudogene 8	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73278711-3	chr2	73278224	73279224	+	857.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6798.0	NM_001005343	381373.0	Mm.330293	NM_001005343	ENSMUSG00000068859	Sp9	-	trans-acting transcription factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34913377-3	chr2	34912875	34913875	+	857.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028716, intron 1 of 14)	CpG	601.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-85324563-4	chr9	85324099	85325099	+	857.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001160378, exon 3 of 3)	exon (NM_001160378, exon 3 of 3)	2525.0	NM_001160378	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-86086924-4	chr5	86086395	86087395	+	857.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310639, intron 4 of 7)	intron (NM_001310639, intron 4 of 7)	15149.0	NM_001310639	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	0.0	3.0	0.0	0.0	3.0	1.0
Merged-chr15-100612651-2	chr15	100612163	100613163	+	857.7999880000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	2447.0	NR_045701	78445.0	Mm.44383	NR_045701	ENSMUSG00000097093	C330013E15Rik	-	RIKEN cDNA C330013E15 gene	ncRNA	2.5	5.5	10.5	3.0	8.5	10.5
Merged-chr17-35591024-3	chr17	35590564	35591564	+	857.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23579.0	NM_175148	69542.0	Mm.265291	NM_175148	ENSMUSG00000039269	2300002M23Rik	Stg|emprin	RIKEN cDNA 2300002M23 gene	protein-coding	1.5	8.5	0.0	8.0	3.0	3.0
Merged-chr14-79552984-3	chr14	79552481	79553481	+	857.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 2 of 8)	L1_Mur2|LINE|L1	-34679.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96874912-3	chr11	96874395	96875395	+	857.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24502.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	8.0	9.5	3.0	0.0	0.0	0.5
Merged-chr2-113304792-3	chr2	113304294	113305294	+	857.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19062.0	NM_029232	75275.0	Mm.159484	NM_029232	ENSMUSG00000041255	Tmco5b	4930563P21Rik	transmembrane and coiled-coil domains 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180946076-2	chr1	180945576	180946576	+	857.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_144794, intron 1 of 22)	intron (NM_144794, intron 1 of 22)	3558.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62230704-2	chr10	62230204	62231204	+	857.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 1 of 7)	CpG	514.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90231573-2	chr9	90231073	90232073	+	857.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	B1F2|SINE|Alu	39196.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158134533-2	chr2	158134033	158135033	+	857.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 3 of 12)	intron (NM_009373, intron 3 of 12)	11859.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-102835322-4	chr9	102834831	102835831	+	857.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284258, intron 1 of 13)	CpG	411.0	NM_001284258	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	12.5	15.0	7.0	7.5	6.5	2.0
Merged-chr3-107686956-2	chr3	107686456	107687456	+	857.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_145542, intron 1 of 16)	intron (NM_145542, intron 1 of 16)	9100.0	NM_001357113	229709.0	Mm.220328	NM_145542	ENSMUSG00000027893	Ahcyl1	1110034F20Rik|AA409031|AA414901|Ahcy-rs3|DCAL|Irbit	S-adenosylhomocysteine hydrolase-like 1	protein-coding	2.0	5.0	5.5	13.0	10.0	4.0
Merged-chr4-132778369-2	chr4	132777869	132778869	+	857.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011284, exon 9 of 9)	3' UTR (NM_011284, exon 9 of 9)	10009.0	NM_011284	19891.0	Mm.2870	NM_011284	ENSMUSG00000028884	Rpa2	AA409079|AI325195|AU020965|RPA34|Rf-A2	replication protein A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31020694-2	chr14	31020194	31021194	+	857.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359857, intron 1 of 30)	intron (NM_001359857, intron 1 of 30)	989.0	NM_001359856	66923.0	Mm.27913	NM_025847	ENSMUSG00000042323	Pbrm1	2610016F04Rik|AI507524|BAF180|Pb1	polybromo 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120040835-2	chr6	120040335	120041335	+	857.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2180.0	NM_001185021	232341.0	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	0.0	2.0	1.0	0.0	2.0	0.0
Merged-chr8-46835187-2	chr8	46834687	46835687	+	857.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008391, intron 6 of 8)	B3A|SINE|B2	95442.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-4997769-3	chr6	4997263	4998263	+	857.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	94443.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12735182-3	chr19	12734689	12735689	+	857.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30443.0	NM_170786	12803.0	Mm.290924	NM_053007	ENSMUSG00000079415	Cntf	AI429687	ciliary neurotrophic factor	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr13-37291519-4	chr13	37291012	37292012	+	857.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53833.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	11.5	40.0	27.0	21.0	50.5	29.5
Merged-chr14-50862711-4	chr14	50862219	50863219	+	857.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009351, intron 6 of 54)	intron (NM_009351, intron 6 of 54)	7835.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	25.5	36.0	37.5	28.5	40.5	28.5
Merged-chr13-103768154-4	chr13	103767645	103768645	+	857.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361085, intron 2 of 11)	intron (NM_001361085, intron 2 of 11)	-3563.0	NM_172592	218543.0	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding	8.5	4.0	2.5	7.5	10.5	2.0
Merged-chr11-75649426-6	chr11	75648926	75649926	+	857.694458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008916)	TTS (NM_008916)	-2083.0	NM_008659	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	36.0	29.0	32.0	20.5	28.0	32.5
Merged-chr7-125621907-3	chr7	125621409	125622409	+	857.6889039999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021887, intron 1 of 8)	PB1D10|SINE|Alu	18480.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	12.0	35.5	51.0	21.0	39.0	72.0
Merged-chr1-181345748-1	chr1	181345248	181346248	+	857.6666869999999	f0_balb.idr	Intergenic	Intergenic	-6880.0	NM_001160212	72978.0	Mm.338083	NM_028408	ENSMUSG00000026514	Cnih3	2900075G08Rik|CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38248051-3	chr15	38247582	38248582	+	857.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28879.0	NM_008757	18285.0	Mm.252830	NM_008757	ENSMUSG00000061923	Odf1	-	outer dense fiber of sperm tails 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141663148-4	chr4	141662652	141663652	+	857.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	PB1D10|SINE|Alu	963.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	132.5	343.0	293.5	143.0	234.5	217.0
Merged-chr11-60844862-4	chr11	60844370	60845370	+	857.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172112, intron 2 of 6)	intron (NM_001172112, intron 2 of 6)	14239.0	NM_145428	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180025440-3	chr2	180024923	180025923	+	857.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177727, intron 1 of 8)	CpG	436.0	NM_177727	241846.0	Mm.21577	NM_177727	ENSMUSG00000039108	Lsm14b	9430078B04|BC040823	LSM family member 14B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103375975-3	chr11	103375469	103376469	+	857.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 7 of 11)	PB1D10|SINE|Alu	-12277.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	17.0	38.0	13.5	5.0	19.0	22.5
Merged-chr19-10833828-4	chr19	10833342	10834342	+	857.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-3784.0	NM_009852	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-113648373-4	chr2	113647875	113648875	+	857.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 13 of 16)	intron (NM_001285459, intron 13 of 16)	-36715.0	NM_001287818	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	2.0	1.0	5.0	2.0	1.0	5.0
Merged-chr10-44233553-2	chr10	44233053	44234053	+	857.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	18128.0	NR_027506	70365.0	Mm.87073	NR_001582	ENSMUSG00000091358	Speer5-ps1	1700007C10Rik|SPEER-5|Speer5-ps	spermatogenesis associated glutamate (E)-rich protein 5, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111447211-3	chr12	111446711	111447711	+	857.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009396, intron 3 of 11)	intron (NM_009396, intron 3 of 11)	4550.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167934256-2	chr2	167933756	167934756	+	857.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	1929.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-77052918-3	chr12	77052415	77053415	+	857.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90667.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41353084-3	chr4	41352580	41353580	+	857.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355508, exon 1 of 7)	5' UTR (NM_001355508, exon 1 of 7)	1117.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	3.0	33.5	10.5	14.0	15.5	10.5
Merged-chr7-129772033-3	chr7	129771519	129772519	+	857.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	180156.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0.0	4.5	0.0	0.0	4.5	0.0
Merged-chr12-112634026-3	chr12	112633593	112634593	+	857.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 5 of 12)	intron (NM_007421, intron 5 of 12)	-10735.0	NM_001161737	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-135725638-3	chr2	135725133	135726133	+	857.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355156, intron 1 of 37)	intron (NM_001355156, intron 1 of 37)	-39205.0	NM_001355154	18798.0	Mm.38009	NM_013829	ENSMUSG00000039943	Plcb4	A930039J07Rik|AI854601|C230058B11Rik	phospholipase C, beta 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21715696-3	chr13	21715190	21716190	+	857.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178182)	promoter-TSS (NM_178182)	453.0	NM_178199	319185.0		NM_178199	ENSMUSG00000094338	Hist1h2bl	H2b-291a	histone cluster 1, H2bl	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35658447-3	chr8	35657950	35658950	+	857.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 1 of 2)	ORR1E|LTR|ERVL-MaLR	-69430.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	0.0	4.0	2.0	1.5	7.0	3.5
Merged-chr11-22662522-2	chr11	22662022	22663022	+	857.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150239.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	0.0	1.0	0.5	0.0	1.0	0.5
Merged-chr18-70437222-2	chr18	70436689	70437689	+	857.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35265.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	42.0	116.5	61.5	46.5	57.0	57.5
Merged-chr6-38992141-4	chr6	38991653	38992653	+	857.6375119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 4 of 12)	L1ME3|LINE|L1	73167.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61459524-4	chr18	61459012	61460012	+	857.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25095.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	0.0	0.5	1.0	5.0	0.0	3.0
Merged-chr18-4438234-4	chr18	4437737	4438737	+	857.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62645.0	NM_001361009	67440.0	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73454874-4	chr2	73454350	73455350	+	857.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289722)	promoter-TSS (NM_001289722)	-961.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-133554441-3	chr2	133553939	133554939	+	857.6166380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007553, exon 2 of 3)	exon (NM_007553, exon 2 of 3)	2280.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-71209205-3	chr14	71208700	71209700	+	857.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42073.0	NR_046075	100043132.0	Mm.399336	NR_046075	ENSMUSG00000115139	Gm4251	-	predicted gene 4251	ncRNA	4.5	6.0	2.0	13.5	17.0	12.0
Merged-chr4-143155374-3	chr4	143154909	143155909	+	857.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256380, intron 6 of 7)	intron (NM_001256380, intron 6 of 7)	-19247.0	NR_105988	102465618.0		NR_105988	ENSMUSG00000106597	Mir7021	mmu-mir-7021	microRNA 7021	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3799217-3	chr4	3798651	3799651	+	857.5833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36504.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	6.5	2.5	4.5	4.0	7.5	5.5
Merged-chr3-52019811-4	chr3	52019334	52020334	+	857.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	85172.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-33778772-4	chr8	33778289	33779289	+	857.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31019.0	NM_001206849	72632.0	Mm.443483	NM_001206849	ENSMUSG00000094500	Smim18	2700090O03Rik|AI835723	small integral membrane protein 18	protein-coding	0.0	0.0	0.0	2.5	0.5	0.0
Merged-chr2-102883203-3	chr2	102882715	102883715	+	857.56665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	18450.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	7.5	29.0	10.0	15.0	6.0	5.0
Merged-chr1-86416476-4	chr1	86415977	86416977	+	857.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9852.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58403759-3	chr13	58403291	58404291	+	857.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301341)	promoter-TSS (NM_001301341)	-448.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120883024-3	chr10	120882516	120883516	+	857.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177092, intron 1 of 6)	intron (NM_177092, intron 1 of 6)	15955.0	NM_177092	320183.0	Mm.169755	NM_177092	ENSMUSG00000051236	Msrb3	D430026P16Rik|I-8-23|MsrB2	methionine sulfoxide reductase B3	protein-coding	5.5	8.0	11.0	2.5	10.0	15.0
Merged-chr16-23245392-4	chr16	23244844	23245844	+	857.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 1 of 7)	intron (NM_001252505, intron 1 of 7)	19323.0	NM_001252505	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-29855484-6	chr13	29854963	29855963	+	857.511108	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308486, intron 1 of 5)	CpG	210.0	NR_131896	68916.0	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126488470-2	chr8	126487970	126488970	+	857.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-13405.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127308608-2	chr10	127308108	127309108	+	857.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001171582, exon 6 of 22)	exon (NM_001171582, exon 6 of 22)	3178.0	NM_001003913	216443.0	Mm.28173	NM_001003913	ENSMUSG00000040354	Mars	Metrs|Mtrns	methionine-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-72243845-2	chr7	72243345	72244345	+	857.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024703, intron 4 of 22)	intron (NM_001024703, intron 4 of 22)	62750.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45962100-2	chr13	45961600	45962600	+	857.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 1 of 6)	intron (NM_001199304, intron 1 of 6)	2891.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	1.5	2.5	2.5	0.0	0.0	0.5
Merged-chr15-76656352-2	chr15	76655852	76656852	+	857.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019396, intron 2 of 4)	GC_rich|Low_complexity|Low_complexity	542.0	NM_001357882	54151.0	Mm.247752	NM_019396	ENSMUSG00000053929	Cyhr1	1110031M01Rik|AU042374|Chrp	cysteine and histidine rich 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-125102923-4	chr4	125102437	125103437	+	857.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290701, exon 5 of 7)	exon (NM_001290701, exon 5 of 7)	17803.0	NR_151472	70088.0	Mm.291214	NM_027310	ENSMUSG00000028863	Meaf6	2310005N01Rik|2810036M01Rik	MYST/Esa1-associated factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65616531-2	chr17	65616031	65617031	+	857.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TA)n|Simple_repeat|Simple_repeat	-2976.0	NM_013933	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-117094953-2	chr13	117094453	117095453	+	857.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-35072.0	NR_046023	623312.0	Mm.131279	NR_046023	ENSMUSG00000114792	Gm6416	-	predicted gene 6416	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92443443-2	chr5	92442943	92443943	+	857.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007644, exon 12 of 12)	3' UTR (NM_007644, exon 12 of 12)	-8244.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	0.0	4.0	6.5	0.0	7.0	3.5
Merged-chr18-74217515-2	chr18	74217015	74218015	+	857.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028868, intron 3 of 14)	intron (NM_028868, intron 3 of 14)	1303.0	NM_028868	74322.0	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr2-29052472-2	chr2	29051972	29052972	+	857.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166705, intron 1 of 5)	intron (NM_001166705, intron 1 of 5)	2594.0	NM_001166705	329375.0	Mm.425079	NM_001085514	ENSMUSG00000079502	Cfap77	1700101E01Rik|Gm823	cilia and flagella associated protein 77	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-33386277-4	chr8	33385812	33386812	+	857.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001098233)	promoter-TSS (NM_001098233)	-13.0	NM_152821	75029.0	Mm.159402	NM_152821	ENSMUSG00000049184	Purg	4930486B15Rik	purine-rich element binding protein G	protein-coding	1.0	6.0	4.0	0.0	1.0	9.0
Merged-chr15-66808989-2	chr15	66808489	66809489	+	857.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029841, intron 1 of 7)	intron (NM_001029841, intron 1 of 7)	22840.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-44989961-4	chr14	44989440	44990440	+	857.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008964, intron 1 of 1)	intron (NM_008964, intron 1 of 1)	1829.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97317022-2	chr11	97316522	97317522	+	857.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025927, intron 2 of 7)	intron (NM_025927, intron 2 of 7)	1306.0	NM_025927	67036.0	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	0.0	0.0	0.5	3.5	0.0	0.5
Merged-chr9-63956142-3	chr9	63955620	63956620	+	857.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	65939.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141077322-2	chr4	141076822	141077822	+	857.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_149724, intron 1 of 8)	B4A|SINE|B4	1035.0	NR_149724	66147.0	Mm.21187	NM_025383	ENSMUSG00000028923	Necap2	1110005F07Rik|AA409105|C78898|NECAP-2	NECAP endocytosis associated 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100326233-2	chr11	100325733	100326733	+	857.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6BA|LTR|ERVK	6284.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	4.5	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118132999-2	chr11	118132499	118133499	+	857.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-3780.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-127142284-3	chr6	127141784	127142784	+	857.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009829, intron 3 of 4)	intron (NM_009829, intron 3 of 4)	-7105.0	NR_040274	77558.0	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-156200208-3	chr4	156199680	156200680	+	857.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015783, intron 1 of 1)	URR1A|DNA|hAT-Charlie	638.0	NM_015783	100038882.0	Mm.4950	NM_015783	ENSMUSG00000035692	Isg15	G1p2|IGI15|IP17|Irfp|UCRP	ISG15 ubiquitin-like modifier	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124756820-4	chr6	124756342	124757342	+	857.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007881)	promoter-TSS (NM_007881)	-355.0	NM_007881	13498.0	Mm.333380	NM_007881	ENSMUSG00000004263	Atn1	Atr1|Drpla|atrophin-1	atrophin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99909476-2	chr15	99908976	99909976	+	857.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22182.0	NM_028180	72277.0	Mm.272766	NM_028180	ENSMUSG00000045350	1700030F18Rik	FAM186A	RIKEN cDNA 1700030F18 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19978995-4	chr10	19978505	19979505	+	857.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 1 of 29)	RLTR11B|LTR|ERVK	44479.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	6.5	3.5	0.0	0.0	0.5	1.0
Merged-chr11-69605125-2	chr11	69604625	69605625	+	857.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013415, intron 1 of 6)	CpG	835.0	NM_013415	11932.0	Mm.235204	NM_013415	ENSMUSG00000041329	Atp1b2	Amog|Atpb-2	ATPase, Na+/K+ transporting, beta 2 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143045513-3	chr7	143045018	143046018	+	857.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110355, intron 1 of 4)	intron (NR_110355, intron 1 of 4)	-7232.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	43.0	57.0	53.5	37.5	34.5	47.0
Merged-chr3-9000540-4	chr3	9000038	9001038	+	857.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	RMER6A|LTR|ERVK	3666.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	3.5	1.5	0.0	0.0	0.0	0.0
Merged-chr19-12488298-3	chr19	12487770	12488770	+	857.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172442, intron 2 of 8)	intron (NM_172442, intron 2 of 8)	13726.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	0.5	4.0	6.5	3.5	12.5	4.0
Merged-chr8-77209462-2	chr8	77208962	77209962	+	857.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083906, intron 6 of 8)	intron (NM_001083906, intron 6 of 8)	306954.0	NM_001083906	110784.0	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47386779-2	chr17	47386279	47387279	+	857.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146079, intron 1 of 3)	B3A|SINE|B2	1386.0	NM_146079	107477.0	Mm.59151	NM_146079	ENSMUSG00000023979	Guca1b	BC018258|GCAP2	guanylate cyclase activator 1B	protein-coding	0.0	1.0	2.5	3.0	4.0	1.0
Merged-chr6-129349641-4	chr6	129349136	129350136	+	857.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177686)	promoter-TSS (NM_177686)	-608.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	21.5	48.0	21.5	14.0	32.5	30.0
Merged-chr7-34266194-4	chr7	34265687	34266687	+	857.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172741, intron 1 of 12)	intron (NM_172741, intron 1 of 12)	19422.0	NM_172741	233103.0	Mm.491097	NM_172741	ENSMUSG00000066571	4931406P16Rik	AA553327|mKIAA0355	RIKEN cDNA 4931406P16 gene	protein-coding	11.5	11.0	8.0	5.5	1.0	7.0
Merged-chr9-4021661-2	chr9	4021161	4022161	+	857.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	287833.0	NM_026276	67618.0	Mm.33970	NM_026276	ENSMUSG00000025894	Aasdhppt	2010309J24Rik|2810407B07Rik|AASD-PPT|CGI-80|LYS2|LYS5	aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-82220894-3	chr12	82220398	82221398	+	857.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 1 of 23)	intron (NM_001167983, intron 1 of 23)	50882.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-174312993-2	chr2	174312493	174313493	+	857.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310085, intron 2 of 12)	intron (NM_001310085, intron 2 of 12)	-14775.0	NM_001310083	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91270609-2	chr2	91270109	91271109	+	857.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023854, intron 10 of 15)	intron (NM_023854, intron 10 of 15)	5494.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	7.5	6.0	4.0	11.5	6.5	5.0
Merged-chr9-45899075-2	chr9	45898575	45899575	+	857.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361114, intron 3 of 13)	B1_Mus2|SINE|Alu	7107.0	NM_001361114	235315.0	Mm.220945	NM_178709	ENSMUSG00000042790	Rnf214	D130054N24Rik	ring finger protein 214	protein-coding	8.5	5.5	1.0	0.0	6.0	0.0
Merged-chr17-23748266-4	chr17	23747765	23748765	+	857.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015472)	promoter-TSS (NR_015472)	-971.0	NR_015472	638247.0	Mm.382600	NR_015472	ENSMUSG00000097006	9530082P21Rik	E030034P13Rik	RIKEN cDNA 9530082P21 gene	ncRNA	7.0	11.0	8.5	8.0	13.0	10.0
Merged-chr9-7603506-4	chr9	7602983	7603983	+	857.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24748.0	NM_013903	30800.0	Mm.390121	NM_013903	ENSMUSG00000018620	Mmp20	-	matrix metallopeptidase 20 (enamelysin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-67845906-3	chr9	67845463	67846463	+	857.4722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177184, intron 1 of 84)	intron (NM_177184, intron 1 of 84)	5567.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55746641-5	chr14	55746141	55747141	+	857.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026819)	promoter-TSS (NM_026819)	948.0	NM_026403	67842.0	Mm.180338	NM_026403	ENSMUSG00000019297	Nop9	2610027L16Rik	NOP9 nucleolar protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35982508-6	chr16	35981891	35982891	+	857.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008465)	promoter-TSS (NM_008465)	-972.0	NM_008465	16646.0	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80446431-4	chr10	80445944	80446944	+	857.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12791.0	NM_001164148	21423.0	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181161644-4	chr2	181161140	181162140	+	857.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4625.0	NM_007906	13628.0	Mm.2645	NM_007906	ENSMUSG00000016349	Eef1a2	EEF1AL|EF-1-alpha-2|Eef1a|S1|STN|wasted|wst	eukaryotic translation elongation factor 1 alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89227456-4	chr3	89226824	89227824	+	857.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030579)	promoter-TSS (NR_030579)	-126.0	NR_030579	100124470.0		NR_030579	ENSMUSG00000076255	Mir92b	Mirn92b|mir-92b|mmu-mir-92b	microRNA 92b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32292139-3	chr19	32291614	32292614	+	857.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 2 of 9)	intron (NM_144792, intron 2 of 9)	57202.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53579093-3	chr19	53578593	53579593	+	857.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21303.0	NM_007790	13006.0	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78278103-3	chr11	78277613	78278613	+	857.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002004, intron 24 of 38)	intron (NM_001002004, intron 24 of 38)	-12728.0	NM_001287206	216976.0	Mm.477146	NM_001045522		BC030499	BC037104|Sgk494	cDNA sequence BC030499	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155405885-4	chr2	155405383	155406383	+	857.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019825, exon 10 of 14)	exon (NM_019825, exon 10 of 14)	24027.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89914303-2	chr3	89913803	89914803	+	857.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1107.0	NM_010559	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	2.0	4.0	6.0	4.5	4.0	4.5
Merged-chr11-75472935-4	chr11	75472516	75473516	+	857.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4966.0	NM_027249	380712.0	Mm.41393	NM_027249	ENSMUSG00000038217	Tlcd2	-	TLC domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-147084833-2	chr2	147084333	147085333	+	857.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_023504, intron 1 of 1)	CpG	512.0	NM_023504	228731.0	Mm.315498	NM_023504	ENSMUSG00000054160	Nkx2-4	1700001P03Rik|Nkx-2.4|tinman	NK2 homeobox 4	protein-coding	0.0	7.5	0.0	0.0	0.0	0.0
Merged-chr11-118423455-4	chr11	118422930	118423930	+	857.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4312.0	NM_001267592	76025.0	Mm.177551	NM_029502	ENSMUSG00000025575	Cant1	5830420C20Rik|Apy1h|D11Bwg0554e|Entpd8|SCAN-1|Shapy	calcium activated nucleotidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99031512-4	chr15	99030982	99031982	+	857.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009448, intron 1 of 3)	PB1D9|SINE|Alu	1591.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-28135686-2	chr6	28135186	28136186	+	857.375	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361125)	promoter-TSS (NM_001361125)	-540.0	NM_001361125	14823.0	Mm.320732	NM_008174	ENSMUSG00000024211	Grm8	A230002O04|GluR8|Gprc1h|mGluR8	glutamate receptor, metabotropic 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65630943-3	chr9	65630445	65631445	+	857.349182	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028030, intron 1 of 7)	CpG	363.0	NM_028030	71973.0	Mm.29148	NM_028030	ENSMUSG00000032387	Rbpms2	2400008B06Rik|AI316523	RNA binding protein with multiple splicing 2	protein-coding	0.0	0.0	0.0	4.5	0.0	0.0
Merged-chr4-9015904-2	chr4	9015404	9016404	+	857.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-253389.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3126090-2	chr11	3125617	3126617	+	857.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_003517, intron 2 of 6)	intron (NR_003517, intron 2 of 6)	2096.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80118497-2	chr10	80117997	80118997	+	857.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301853, intron 1 of 8)	intron (NM_001301853, intron 1 of 8)	2694.0	NM_001301854	20869.0	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103372764-2	chr11	103372207	103373207	+	857.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 8 of 11)	intron (NM_183034, intron 8 of 11)	-9015.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	11.5	2.0	6.0	2.0	0.0	3.5
Merged-chr16-95743214-2	chr16	95742714	95743714	+	857.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	40807.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122111925-1	chr8	122111425	122112425	+	857.3333130000001	f0_balb.idr	Intergenic	Intergenic	133901.0	NR_106096	102466915.0		NR_106096	ENSMUSG00000099140	Mir7237	Gm27482|mmu-mir-7237	microRNA 7237	ncRNA	4.5	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27188201-2	chr14	27187701	27188701	+	857.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	Lx8|LINE|L1	44208.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36642119-3	chr16	36641614	36642614	+	857.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	23963.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70617800-6	chr8	70617320	70618320	+	857.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153074, exon 2 of 3)	exon (NM_153074, exon 2 of 3)	976.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	167.0	386.0	239.0	132.0	214.0	196.5
Merged-chr16-33306773-3	chr16	33306274	33307274	+	857.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55318.0	NM_080557	69150.0	Mm.28196	NM_080557	ENSMUSG00000022808	Snx4	1810036H14Rik|AI037066	sorting nexin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-108077711-3	chr11	108077197	108078197	+	857.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 3 of 16)	intron (NM_011101, intron 3 of 16)	80849.0	NR_106082	102465705.0		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128335759-3	chr10	128335261	128336261	+	857.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1966.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-128006420-3	chr1	128005951	128006951	+	857.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 8 of 20)	intron (NM_001285945, intron 8 of 20)	96020.0	NM_027678	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131767701-4	chr2	131767222	131768222	+	857.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79934.0	NR_029381	414081.0	Mm.246905	NR_029381	ENSMUSG00000086822	5330413P13Rik	-	RIKEN cDNA 5330413P13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117366676-3	chr8	117366173	117367173	+	857.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	17503.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59132455-3	chr2	59131959	59132959	+	857.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 1 of 13)	RLTR13B4|LTR|ERVK	28224.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-34239579-3	chr15	34239029	34240029	+	857.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033521, intron 1 of 6)	intron (NM_033521, intron 1 of 6)	1503.0	NM_033521	114128.0	Mm.197518	NM_033521	ENSMUSG00000022257	Laptm4b	C330023P13Rik|LAPTM4beta	lysosomal-associated protein transmembrane 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-17018073-3	chr13	17017564	17018564	+	857.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138654, intron 12 of 13)	Lx5b|LINE|L1	676701.0	NM_138654	192136.0	Mm.364180	NM_138654	ENSMUSG00000055137	Sugct	5033411D12Rik|D17907	succinyl-CoA glutarate-CoA transferase	protein-coding	4.0	11.0	3.5	14.0	9.0	12.5
Merged-chr18-36558230-4	chr18	36557845	36558845	+	857.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2258.0	NM_175375	108857.0	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	6.5	9.0	10.5	2.5	12.0	4.0
Merged-chr19-7484206-3	chr19	7483696	7484696	+	857.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271487)	promoter-TSS (NM_001271487)	-905.0	NM_001003934	20168.0	Mm.246990	NM_053076	ENSMUSG00000024758	Rtn3	RTN3-A1	reticulon 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-89577166-4	chr1	89576655	89577655	+	857.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	106737.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35366744-1	chr8	35366244	35367244	+	857.3333130000001	f0_balb.idr	Intergenic	Intergenic	-8997.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	3.0	11.0	9.5	0.0	10.5	18.0
Merged-chr13-104110195-4	chr13	104109715	104110715	+	857.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029447)	promoter-TSS (NM_029447)	474.0	NM_144838	218544.0	Mm.44416	NM_144838	ENSMUSG00000042743	Sgtb	C630001O05Rik	small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta	protein-coding	7.0	12.5	11.0	5.5	6.0	11.0
Merged-chr13-73822358-4	chr13	73821879	73822879	+	857.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347535, intron 8 of 8)	intron (NM_001347535, intron 8 of 8)	25252.0	NM_028186	72293.0	Mm.45506	NM_028186	ENSMUSG00000021567	Nkd2	2210403L10Rik|AW212591|mNkd2	naked cuticle 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40053364-2	chr10	40052864	40053864	+	857.2999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 4 of 5)	intron (NM_001114332, intron 4 of 5)	-28096.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-9468061-4	chr14	9467571	9468571	+	857.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-416024.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	15.5	6.5	10.0	20.5	0.0	10.0
Merged-chr1-57429903-4	chr1	57429367	57430367	+	857.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23193.0	NM_001302963	68736.0	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111743521-4	chr12	111743021	111744021	+	857.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163388, intron 4 of 5)	L1MB3|LINE|L1	-15328.0	NM_001361612	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173000977-4	chr2	173000472	173001472	+	857.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175112, intron 1 of 11)	intron (NM_175112, intron 1 of 11)	855.0	NM_175112	66679.0	Mm.4113	NM_175112	ENSMUSG00000027509	Rae1	3230401I12Rik|D2Ertd342e|MNRP|MNRP41	ribonucleic acid export 1	protein-coding	29.0	62.5	80.0	16.5	105.5	75.5
Merged-chr17-71187906-3	chr17	71187375	71188375	+	857.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	3897.0	NM_022882	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98877502-3	chr15	98877009	98878009	+	857.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026967)	TTS (NM_026967)	3905.0	NM_026967	69159.0	Mm.259708	NM_026967	ENSMUSG00000023755	Rhebl1	1810036J22Rik|Rheb2	Ras homolog enriched in brain like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106627923-4	chr11	106627443	106628443	+	857.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-15013.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134379034-2	chr5	134378493	134379493	+	857.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081462, intron 20 of 29)	B2_Mm1a|SINE|B2	52539.0	NR_039544	100628570.0		NR_039544	ENSMUSG00000093311	Mir3965	mmu-mir-3965|mu-mir-3965	microRNA 3965	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-145180857-2	chr5	145180360	145181360	+	857.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291249, intron 7 of 7)	intron (NM_001291249, intron 7 of 7)	10732.0	NM_020582	57423.0	Mm.133551	NM_020582	ENSMUSG00000038690	Atp5j2	1110019H14Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2	protein-coding	10.0	3.0	4.0	14.0	0.0	1.5
Merged-chr13-59004705-4	chr13	59004210	59005210	+	857.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	197013.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	18.5	72.0	89.0	23.5	70.0	90.5
Merged-chr10-44447580-2	chr10	44447080	44448080	+	857.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007548, intron 3 of 6)	intron (NM_007548, intron 3 of 6)	11168.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-21146755-4	chr2	21146262	21147262	+	857.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58603.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6718349-4	chr2	6717850	6718850	+	857.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	3312.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79773243-2	chr15	79772745	79773745	+	857.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_017470, intron 1 of 3)	intron (NM_017470, intron 1 of 3)	1222.0	NM_017470	54152.0	Mm.288159	NM_017470	ENSMUSG00000022420	Dnal4	D15Ertd424e|Dnalc4	dynein, axonemal, light chain 4	protein-coding	0.0	0.0	0.0	2.0	15.0	1.5
Merged-chr6-51567465-3	chr6	51566957	51567957	+	857.2333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361577, intron 2 of 6)	intron (NM_001361577, intron 2 of 6)	22164.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.0	0.0	1.5	4.0	2.0	0.0
Merged-chr8-56862370-3	chr8	56861878	56862878	+	857.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	311244.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126401158-3	chr4	126400653	126401653	+	857.211121	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153402, intron 5 of 18)	intron (NM_153402, intron 5 of 18)	28389.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-125428636-4	chr1	125428117	125429117	+	857.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205386, intron 2 of 12)	intron (NM_001205386, intron 2 of 12)	7110.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137531911-4	chr5	137531502	137532502	+	857.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010312, intron 1 of 9)	intron (NM_010312, intron 1 of 9)	1304.0	NM_010312	14693.0	Mm.30141	NM_010312	ENSMUSG00000029713	Gnb2	Gnb-2	guanine nucleotide binding protein (G protein), beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40548048-3	chr9	40547538	40548538	+	857.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16655.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	7.5	2.5	1.5	0.0	7.5	9.5
Merged-chr4-133570185-3	chr4	133569725	133570725	+	857.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER92B|LTR|ERV1	-4520.0	NM_172876	242691.0	Mm.40110	NM_172876	ENSMUSG00000028850	Gpatch3	D930035B09Rik|Gpatc3	G patch domain containing 3	protein-coding	7.0	6.5	0.0	0.0	13.0	4.0
Merged-chr6-39562383-4	chr6	39561888	39562888	+	857.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4554.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129384108-4	chr2	129383532	129384532	+	857.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR10_RN|LTR|ERVK	-12893.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	62.5	80.0	48.5	60.0	132.5	63.0
Merged-chr9-21357535-3	chr9	21357042	21358042	+	857.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10329.0	NM_001042708	16201.0	Mm.440026	NM_010561	ENSMUSG00000032178	Ilf3	MBII-26|MPHOSPH4|NF90|NFAR	interleukin enhancer binding factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-66988009-3	chr1	66987488	66988488	+	857.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42932.0	NM_021285	17901.0	Mm.1000	NM_021285	ENSMUSG00000061816	Myl1	AI325107|MLC1f|MLC3f|Mylf	myosin, light polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57172385-3	chr17	57171835	57172835	+	857.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	21846.0	NM_019418	50930.0	Mm.483369	NM_019418	ENSMUSG00000005824	Tnfsf14	HVEM-L|HVEML|LIGHT|LTg|Ly113|Tnlg1d	tumor necrosis factor (ligand) superfamily, member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75121836-3	chr14	75121332	75122332	+	857.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027581, intron 5 of 9)	intron (NM_027581, intron 5 of 9)	9051.0	NM_027581	70859.0	Mm.320289	NM_027581	ENSMUSG00000021997	Lrrc63	4921509B22Rik	leucine rich repeat containing 63	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-63504086-3	chr2	63503579	63504579	+	857.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71209.0	NR_152174	667257.0	Mm.417007	NR_152174		Gm8541	EG667257	predicted gene 8541	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103367220-2	chr15	103366720	103367720	+	857.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010577)	promoter-TSS (NM_010577)	-429.0	NM_001314041	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32644385-2	chr18	32643885	32644885	+	857.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84351.0	NM_001347610	71683.0	Mm.292145	NM_027863	ENSMUSG00000090523	Gypc	0610037F22Rik|Cd236r	glycophorin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59559807-4	chr11	59559291	59560291	+	857.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 7 of 9)	intron (NR_153314, intron 7 of 9)	11947.0	NM_001011789	257962.0	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116625680-4	chr11	116625182	116626182	+	857.154785	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	1337.0	NM_172572	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	1.0	23.5	21.5	6.0	10.5	30.5
Merged-chr10-61204177-4	chr10	61203674	61204674	+	857.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081127, intron 18 of 21)	intron (NM_001081127, intron 18 of 21)	28912.0	NM_023064	65971.0	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105715195-4	chr8	105714703	105715703	+	857.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027469)	TTS (NM_027469)	6914.0	NM_027655	71046.0	Mm.280888	NM_027655	ENSMUSG00000013158	4933405L10Rik	-	RIKEN cDNA 4933405L10 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61399565-4	chr10	61399065	61400065	+	857.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16042.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129476912-4	chr6	129476411	129477411	+	857.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4132.0	NR_132130	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.0	2.5	3.0	0.0	3.5	1.5
Merged-chr4-3778245-2	chr4	3777731	3778731	+	857.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	57424.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0.0	21.5	4.0	9.0	5.5	10.0
Merged-chr17-36257693-7	chr17	36257183	36258183	+	857.119019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026308, exon 2 of 5)	exon (NM_026308, exon 2 of 5)	163.0	NM_026308	67676.0	Mm.27131	NM_026308	ENSMUSG00000024446	Rpp21	0610037N01Rik	ribonuclease P 21 subunit	protein-coding	6.5	6.5	5.0	6.5	6.5	5.5
Merged-chr9-60187153-3	chr9	60186635	60187635	+	857.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040426, intron 7 of 17)	intron (NM_001040426, intron 7 of 17)	-45915.0	NM_172444	207596.0	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-44383212-3	chr5	44382713	44383713	+	857.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-156607.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	0.0	0.0	0.0	2.0	0.0	0.0
Merged-chr15-78301001-3	chr15	78300524	78301524	+	857.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287389, intron 1 of 11)	B4|SINE|B4	4697.0	NM_007781	12984.0	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	3.0	15.0	10.5	7.5	18.0	8.5
Merged-chr18-24438074-3	chr18	24437580	24438580	+	857.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8910.0	NR_029573	387182.0		NR_029573	ENSMUSG00000065532	Mir187	Mirn187|mir-187|mmu-mir-187	microRNA 187	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37197042-3	chr10	37196561	37197561	+	857.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-58135.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-16658709-3	chr10	16658213	16659213	+	857.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	437069.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-52376688-3	chr10	52376185	52377185	+	857.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053187, intron 1 of 7)	intron (NM_053187, intron 1 of 7)	5439.0	NM_053187	94221.0	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81560489-4	chr10	81560065	81561065	+	857.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276288, intron 1 of 6)	intron (NM_001276288, intron 1 of 6)	1121.0	NM_001276288	14797.0	Mm.180013	NM_010347	ENSMUSG00000054452	Aes	AL024115|Esp1|Grg|Grg-5|Grg5|Tle5	amino-terminal enhancer of split	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135951273-4	chr5	135950827	135951827	+	857.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16686.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	5.5	8.0	7.0	8.0	9.5	6.0
Merged-chr9-62998806-4	chr9	62998308	62999308	+	857.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-17929.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104244004-4	chr9	104243489	104244489	+	857.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 2 of 56)	intron (NM_001359740, intron 2 of 56)	18941.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-193191956-3	chr1	193191452	193192452	+	857.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153137, intron 8 of 15)	intron (NM_153137, intron 8 of 15)	9594.0	NM_153137	215243.0	Mm.261259	NM_153137	ENSMUSG00000037318	Traf3ip3	6030423D04Rik|AI115021|T3jam	TRAF3 interacting protein 3	protein-coding	28.5	18.0	7.0	0.0	7.0	0.5
Merged-chr17-31018467-4	chr17	31017972	31018972	+	857.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39222.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0.0	1.5	2.5	1.0	0.0	0.0
Merged-chr11-96785067-3	chr11	96784565	96785565	+	857.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4071.0	NM_007622	12412.0	Mm.29055	NM_007622	ENSMUSG00000018666	Cbx1	Cbx|Cbx-rs2|E430007M08Rik|HP1B|Hp1beta|M31|MOD1	chromobox 1	protein-coding	0.0	0.0	0.0	1.5	0.0	0.0
Merged-chr5-67295824-3	chr5	67295287	67296287	+	857.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-11168.0	NM_178651	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	72.5	82.0	71.0	19.5	21.5	32.0
Merged-chr16-91935357-3	chr16	91934866	91935866	+	857.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3736.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.5	1.0	2.5	0.0	2.0	2.5
Merged-chr11-121340496-4	chr11	121340020	121341020	+	857.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025793, intron 3 of 9)	intron (NM_025793, intron 3 of 9)	13927.0	NM_025793	66840.0	Mm.103986	NM_025793	ENSMUSG00000025173	Wdr45b	0610008N23Rik|AA408735|D16Bwg0193e|WIPI-3|Wdr45l	WD repeat domain 45B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18342989-5	chr16	18342571	18343571	+	857.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359110, intron 1 of 9)	intron (NM_001359110, intron 1 of 9)	839.0	NM_001359109	27883.0	Mm.265990	NM_138583	ENSMUSG00000013539	Tango2	D16H22S680E|T10	transport and golgi organization 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75732727-2	chr2	75732230	75733230	+	857.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-28067.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	33.5	111.0	71.5	63.5	118.0	59.0
Merged-chr2-112262633-3	chr2	112262110	112263110	+	857.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025403, exon 2 of 2)	3' UTR (NM_025403, exon 2 of 2)	684.0	NM_025403	66181.0	Mm.272346	NM_025403	ENSMUSG00000027133	Nop10	1110036B12Rik|NOP10P|Nola3	NOP10 ribonucleoprotein	protein-coding	27.5	75.5	69.5	31.0	50.5	69.0
Merged-chr2-27595459-4	chr2	27594959	27595959	+	857.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80312.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9881954-1	chr3	9881454	9882454	+	857.0	f1_c57bl6.idr	Intergenic	Intergenic	-48275.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	3.5	9.0	1.5	0.5	8.0	4.5
Merged-chr13-63696610-3	chr13	63696120	63697120	+	857.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126476, intron 4 of 4)	intron (NR_126476, intron 4 of 4)	37678.0	NR_126476	75522.0	Mm.54259	NR_126476	ENSMUSG00000113825	1700024I08Rik	-	RIKEN cDNA 1700024I08 gene	ncRNA	0.5	0.0	1.5	0.5	0.0	1.0
Merged-chr3-40853368-2	chr3	40852868	40853868	+	857.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045392)	TTS (NR_045392)	1917.0	NR_045392	100039043.0	Mm.460823	NM_001129886		Gm10731	-	FUN14 domain containing 2 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56926995-4	chr17	56926510	56927510	+	857.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_022328, exon 2 of 12)	exon (NM_022328, exon 2 of 12)	8378.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54792977-2	chr13	54792477	54793477	+	857.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028841, intron 3 of 7)	intron (NM_028841, intron 3 of 7)	3572.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45251408-2	chr17	45250909	45251909	+	857.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	182298.0	NM_152810	71702.0	Mm.28270	NM_152810	ENSMUSG00000023932	Cdc5l	1200002I02Rik|AA408004|PCDC5RP	cell division cycle 5-like (S. pombe)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45550156-2	chr19	45549656	45550656	+	857.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10408.0	NM_001330506	56626.0	Mm.46509	NM_020032	ENSMUSG00000025218	Poll	1110003P06Rik|AV007317	polymerase (DNA directed), lambda	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9439708-2	chr3	9439208	9440208	+	857.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133218, intron 8 of 8)	intron (NM_133218, intron 8 of 8)	36630.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	0.0	2.0	1.5	1.0	10.5	0.0
Merged-chr16-15636694-1	chr16	15636194	15637194	+	857.0	f0_c57.idr	exon (NM_008565, exon 2 of 16)	exon (NM_008565, exon 2 of 16)	706.0	NM_008565	17217.0	Mm.1500	NM_008565	ENSMUSG00000022673	Mcm4	19G|AI325074|AU045576|Cdc21|Mcmd4|mKIAA4003|mcdc21	minichromosome maintenance complex component 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-18278912-2	chr9	18278412	18279412	+	857.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-13355.0	NM_025844	66917.0	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-32166498-2	chr14	32165998	32166998	+	857.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019744, intron 1 of 9)	intron (NM_019744, intron 1 of 9)	709.0	NM_019744	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84523284-1	chr2	84522784	84523784	+	857.0	f0_balb.idr	Intergenic	Intergenic	-16411.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	6.0	48.5	17.5	6.0	45.0	16.5
Merged-chr19-55862016-2	chr19	55861516	55862516	+	857.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-33305.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95141592-3	chr4	95141124	95142124	+	857.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89402.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45478660-3	chr17	45478162	45479162	+	857.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3724.0	NM_001357831	71020.0	Mm.44257	NM_027649	ENSMUSG00000023935	Spats1	1700011H05Rik|4933400B06Rik|Ddip|Srsp1	spermatogenesis associated, serine-rich 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-115826653-1	chr4	115826153	115827153	+	857.0	f1_c57bl6.idr	Intergenic	Intergenic	-1439.0	NM_175308	100465.0	Mm.35571	NM_175308	ENSMUSG00000028709	Mob3c	AW822253|D130076I06Rik|Mobkl2c	MOB kinase activator 3C	protein-coding	3.0	0.0	0.5	2.5	5.5	3.0
Merged-chr4-145139983-2	chr4	145139483	145140483	+	857.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 24 of 69)	Lx8|LINE|L1	50683.0	NM_001276502	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98925229-2	chr11	98924729	98925729	+	857.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12467.0	NM_009024	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19443625-3	chr7	19443122	19444122	+	857.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172279, intron 7 of 16)	intron (NM_172279, intron 7 of 16)	14872.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	1.0	0.0	1.5	0.0	1.0	1.5
Merged-chr9-58226488-3	chr9	58225974	58226974	+	857.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008884, intron 6 of 7)	intron (NM_008884, intron 6 of 7)	5324.0	NR_105806	102466639.0		NR_105806	ENSMUSG00000098886	Mir6385	Gm28021|mmu-mir-6385	microRNA 6385	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123406968-4	chr8	123406445	123407445	+	857.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008559)	promoter-TSS (NM_008559)	-137.0	NM_008559	17199.0	Mm.324942	NM_008559	ENSMUSG00000074037	Mc1r	Mcr1|Mshra|Tob|e	melanocortin 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67252498-1	chr18	67251998	67252998	+	857.0	f0_balb.idr	Intergenic	Lx8|LINE|L1	-6668.0	NM_001357518	225651.0	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	Pgap5	metallophosphoesterase 1	protein-coding	13.5	6.0	9.0	1.5	0.0	6.0
Merged-chr2-142595819-2	chr2	142595319	142596319	+	857.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	305645.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21791200-1	chr13	21790700	21791700	+	857.0	f1_c57bl6.idr	Intergenic	Intergenic	3712.0	NM_001290466	319188.0	Mm.264645	NM_178202	ENSMUSG00000069308	Hist1h2bp	-	histone cluster 1, H2bp	protein-coding	0.0	1.5	3.0	0.0	4.5	0.0
Merged-chr9-108336301-3	chr9	108335794	108336794	+	857.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016802, intron 5 of 5)	B1_Mus2|SINE|Alu	-2786.0	NM_001329528	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154773210-2	chr2	154772710	154773710	+	857.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR40c|LTR|ERVL	-17900.0	NM_001139512	19383.0	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	0.0	1.5	1.5	0.0	0.0	2.5
Merged-chr4-132938728-2	chr4	132938228	132939228	+	857.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16177.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	0.0	0.0	0.0	0.0	1.5	0.0
Merged-chr3-135517079-3	chr3	135516571	135517571	+	857.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027288, intron 4 of 16)	MLT1F2|LTR|ERVL-MaLR	31460.0	NM_027288	110173.0	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38427219-4	chr18	38426744	38427744	+	857.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	8337.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114959220-2	chr11	114958720	114959720	+	857.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199225, intron 2 of 3)	RSINE1|SINE|B4	1197.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	0.0	1.0	0.5	0.5	0.5	0.5
Merged-chr8-84739524-1	chr8	84739024	84740024	+	857.0	f0_balb.idr	intron (NM_001081982, intron 2 of 9)	intron (NM_001081982, intron 2 of 9)	34845.0	NM_001081981	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	2.0	0.0	2.5	0.0	2.0	0.5
Merged-chr11-116111481-2	chr11	116110981	116111981	+	857.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1246.0	NM_172570	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88305860-2	chr1	88305360	88306360	+	857.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134252)	promoter-TSS (NM_134252)	-852.0	NM_134252	171382.0	Mm.218753	NM_134252	ENSMUSG00000036251	Trpm8	CMR1|LTRPC6|LTrpC-6|TRPP8|Trp-p8	transient receptor potential cation channel, subfamily M, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60524355-1	chr18	60523855	60524855	+	857.0	f1_balb.idr	Intergenic	Intergenic	-1799.0	NM_026302	67665.0	Mm.272801	NM_026302	ENSMUSG00000024603	Dctn4	1110001K06Rik|4930547K17Rik|C130039E17Rik|p62	dynactin 4	protein-coding	60.5	115.5	121.0	80.5	190.5	143.0
Merged-chr19-10278001-3	chr19	10277496	10278496	+	857.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	26881.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-89978423-2	chr9	89977923	89978923	+	857.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357743, intron 10 of 26)	intron (NM_001357743, intron 10 of 26)	68648.0	NM_001357743	19417.0	Mm.44561	NM_011245	ENSMUSG00000032356	Rasgrf1	AI844718|CDC25|CDC25Mm|Gnrp|Grf1|Grfbeta|P190-A|Ras-GRF1|p190|p190RhoGEF	RAS protein-specific guanine nucleotide-releasing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120276630-3	chr8	120276127	120277127	+	857.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48397.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34032776-2	chr11	34032276	34033276	+	857.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	MLT1A0|LTR|ERVL-MaLR	-14152.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86171361-2	chr15	86170861	86171861	+	857.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	B4A|SINE|B4	-14367.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-76288599-2	chr5	76288099	76289099	+	857.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007715, intron 2 of 22)	Lx5|LINE|L1	14903.0	NM_001305222	12753.0	Mm.3552	NM_007715	ENSMUSG00000029238	Clock	5330400M04Rik|KAT13D	circadian locomotor output cycles kaput	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-76513384-3	chr10	76512884	76513884	+	857.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019434, intron 28 of 28)	MTD-int|LTR|ERVL-MaLR	-18221.0	NM_146006	16987.0	Mm.55075	NM_146006	ENSMUSG00000033105	Lss	2810025N20Rik|D10Ertd116e|Osc	lanosterol synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99130687-3	chr9	99130162	99131162	+	857.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 1 of 23)	MIR|SINE|MIR	9549.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90977460-4	chr5	90976969	90977969	+	857.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026788, intron 6 of 7)	intron (NM_026788, intron 6 of 7)	46273.0	NM_026788	665563.0	Mm.153030	NM_026788	ENSMUSG00000029376	Mthfd2l	1110019K23Rik|C630010D07Rik	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120630445-2	chr2	120629945	120630945	+	857.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20850.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	7.0	3.0	2.5	3.5	6.0	6.0
Merged-chr19-44389174-2	chr19	44388669	44389669	+	857.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	18540.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	73.0	170.0	121.5	72.5	169.0	142.0
Merged-chr11-114885887-6	chr11	114885327	114886327	+	856.9722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4214.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40220507-4	chr12	40220048	40221048	+	856.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013562, intron 1 of 11)	intron (NM_013562, intron 1 of 11)	2263.0	NR_035459	100316693.0		NR_035459	ENSMUSG00000089371	Mir1938	mir-1938|mmu-mir-1938	microRNA 1938	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31205893-9	chr14	31205323	31206323	+	856.962952	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347583, intron 1 of 13)	intron (NM_001347583, intron 1 of 13)	1003.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117495012-4	chr5	117494498	117495498	+	856.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	80996.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	27.5	41.5	17.5	30.0	31.5	49.0
Merged-chr4-55364099-3	chr4	55363599	55364599	+	856.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009011, intron 1 of 9)	MIRc|SINE|MIR	14057.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	28.0	50.0	38.5	11.0	39.0	28.5
Merged-chr9-105648564-3	chr9	105648082	105649082	+	856.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081309, intron 2 of 19)	intron (NM_001081309, intron 2 of 19)	5587.0	NM_001081309	75669.0	Mm.274830	NM_029380	ENSMUSG00000032571	Pik3r4	2210010O15Rik|C730038E05Rik|C85833|D9Ertd418e|Vps15|p150	phosphoinositide-3-kinase regulatory subunit 4	protein-coding	7.0	7.0	4.0	21.5	62.0	41.0
Merged-chr10-95500911-4	chr10	95500456	95501456	+	856.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359476, intron 1 of 5)	intron (NM_001359476, intron 1 of 5)	993.0	NM_001359476	67270.0	Mm.30008	NM_026065	ENSMUSG00000062981	Mrpl42	2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|L42mt|MRP-L31|MRP-L42|MRP-S32|PTD007|Rpml31|S32mt	mitochondrial ribosomal protein L42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87364815-4	chr3	87364310	87365310	+	856.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009690, intron 2 of 5)	intron (NM_009690, intron 2 of 5)	6929.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	30.0	50.5	51.5	11.5	47.5	41.0
Merged-chr3-96883591-4	chr3	96883069	96884069	+	856.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026229, intron 7 of 13)	intron (NM_026229, intron 7 of 13)	21729.0	NM_026229	67549.0	Mm.46722	NM_026229	ENSMUSG00000028096	Gpr89	4933412D19Rik|Gpr89a|SH120	G protein-coupled receptor 89	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10977638-2	chr16	10977138	10978138	+	856.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	15483.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56722935-3	chr18	56722454	56723454	+	856.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010721, intron 1 of 10)	intron (NM_010721, intron 1 of 10)	15141.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51742986-4	chr13	51742487	51743487	+	856.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281880, intron 2 of 16)	intron (NM_001281880, intron 2 of 16)	50760.0	NM_001281880	20354.0	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117371442-4	chr8	117370927	117371927	+	856.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	22257.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-35681881-4	chr15	35681360	35682360	+	856.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177151, intron 33 of 61)	intron (NM_177151, intron 33 of 61)	-20813.0	NR_030606	100124469.0		NR_030606	ENSMUSG00000077890	Mir875	Mirn875|mir-875|mmu-mir-875	microRNA 875	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110666114-4	chr9	110665616	110666616	+	856.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	9613.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	23.0	29.0	28.0	16.5	37.5	27.0
Merged-chr13-25857284-4	chr13	25856789	25857789	+	856.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109027.0	NR_045062	100503530.0	Mm.86763	NR_045062	ENSMUSG00000086531	Gm11351	-	predicted gene 11351	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-25798408-4	chr6	25797896	25798896	+	856.8624880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133931, intron 3 of 17)	intron (NM_133931, intron 3 of 17)	10830.0	NM_133931	101185.0	Mm.274589	NM_133931	ENSMUSG00000029676	Pot1a	1500031H18Rik|AI851169|Pot1	protection of telomeres 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24905136-4	chr7	24904657	24905657	+	856.854126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130152, intron 1 of 28)	intron (NM_001130152, intron 1 of 28)	811.0	NM_001130152	16801.0	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108865858-2	chr3	108865358	108866358	+	856.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001165965, intron 8 of 11)	intron (NM_001165965, intron 8 of 11)	24150.0	NM_177091	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	0.5	9.0	7.0	0.5	9.0	7.0
Merged-chr2-158124276-2	chr2	158123776	158124776	+	856.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_009373, exon 10 of 13)	exon (NM_009373, exon 10 of 13)	22116.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113434855-2	chr13	113434355	113435355	+	856.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67989.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122822049-2	chr6	122821549	122822549	+	856.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_021899, intron 1 of 10)	intron (NM_021899, intron 1 of 10)	1865.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135774967-2	chr5	135774467	135775467	+	856.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029659, intron 1 of 8)	intron (NM_029659, intron 1 of 8)	3334.0	NM_001289554	76571.0	Mm.247666	NM_029659	ENSMUSG00000019178	Styxl1	1700011C14Rik|Dusp24|Mkstyx	serine/threonine/tyrosine interacting-like 1	protein-coding	0.0	0.0	3.0	0.5	3.0	2.0
Merged-chr5-147511616-2	chr5	147511116	147512116	+	856.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359433, intron 6 of 19)	intron (NM_001359433, intron 6 of 19)	81460.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146209556-2	chr6	146209056	146210056	+	856.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 45 of 56)	intron (NM_019923, intron 45 of 56)	275434.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-91133383-2	chr8	91132883	91133883	+	856.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302267, intron 1 of 10)	intron (NM_001302267, intron 1 of 10)	356.0	NM_001358938	14339.0	Mm.324588	NM_010241	ENSMUSG00000031667	Aktip	AL023020|Fif|Ft|Ft1|Fts	thymoma viral proto-oncogene 1 interacting protein	protein-coding	4.5	8.0	3.0	8.5	9.5	8.0
Merged-chr18-46564866-3	chr18	46564360	46565360	+	856.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173394, intron 2 of 2)	intron (NM_173394, intron 2 of 2)	9673.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64193267-6	chr1	64192730	64193730	+	856.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71841.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100671581-3	chr5	100671084	100672084	+	856.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027978, intron 1 of 6)	intron (NM_027978, intron 1 of 6)	2672.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	8.0	0.5	2.5	0.0	7.0	2.5
Merged-chr4-48225368-3	chr4	48224846	48225846	+	856.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355184, intron 3 of 10)	intron (NM_001355184, intron 3 of 10)	-12131.0	NR_035484	100316708.0		NR_035484	ENSMUSG00000087844	Mir1958	mmu-mir-1958	microRNA 1958	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-74977148-3	chr14	74976653	74977653	+	856.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046078, intron 2 of 2)	intron (NR_046078, intron 2 of 2)	2067.0	NR_046078	100043169.0	Mm.145900	NR_046078	ENSMUSG00000115019	Gm4278	-	predicted gene 4278	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8712433-4	chr4	8711932	8712932	+	856.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277149, intron 1 of 37)	MLT1H|LTR|ERVL-MaLR	22026.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148155225-2	chr4	148154725	148155725	+	856.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355701, intron 5 of 5)	intron (NM_001355701, intron 5 of 5)	-3090.0	NM_001163707	50762.0	Mm.27445	NM_015797	ENSMUSG00000055401	Fbxo6	AA408845|FBG2|Fbs2|Fbx6b|Fbxo6b	F-box protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101214226-4	chr4	101213740	101214740	+	856.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 1 of 24)	intron (NM_146145, intron 1 of 24)	51042.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11455393-2	chr8	11454893	11455893	+	856.7999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	B3|SINE|B2	-22536.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120599736-4	chr8	120599237	120600237	+	856.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-10662.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80450686-4	chr17	80450206	80451206	+	856.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009231, intron 5 of 21)	intron (NM_009231, intron 5 of 21)	29747.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-31938698-3	chr12	31938193	31939193	+	856.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177993, intron 3 of 8)	intron (NM_177993, intron 3 of 8)	11552.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	3.0	0.0	0.0	6.0	2.5	2.5
Merged-chr12-36205941-3	chr12	36205455	36206455	+	856.7666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	12263.0	NM_027699	71156.0	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	0.0	2.0	0.0	0.0	3.0	0.5
Merged-chr10-127678172-4	chr10	127677717	127678717	+	856.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173732, intron 1 of 6)	intron (NM_173732, intron 1 of 6)	1152.0	NM_001113211	210035.0	Mm.251075	NM_173732	ENSMUSG00000040195	Nemp1	Tmem194|Tmem194a	nuclear envelope integral membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35196488-2	chr17	35196064	35197064	+	856.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008518)	TTS (NM_008518)	1592.0	NR_105939	102465588.0		NR_105939	ENSMUSG00000098291	Mir6973a	Gm27967|mmu-mir-6973a	microRNA 6973a	ncRNA	1.5	1.5	6.0	11.0	60.5	42.5
Merged-chr1-177685126-2	chr1	177684626	177685626	+	856.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42183.0	NR_037994	75589.0	Mm.86666	NR_037994	ENSMUSG00000101746	2310043L19Rik	-	RIKEN cDNA 2310043L19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79443620-4	chr8	79443114	79444114	+	856.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44146.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133177821-2	chr4	133177325	133178325	+	856.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 2 of 8)	intron (NM_153423, intron 2 of 8)	-17830.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	101.0	127.5	126.5	69.0	142.5	91.5
Merged-chr13-110392384-4	chr13	110391880	110392880	+	856.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2664.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0.0	0.0	0.5	0.0	2.5	0.0
Merged-chr7-132387760-4	chr7	132387262	132388262	+	856.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR40|LTR|ERVK	-70534.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113814600-3	chr5	113814123	113815123	+	856.7333369999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14271.0	NM_146162	231633.0	Mm.41681	NM_146162	ENSMUSG00000054675	Tmem119	AW208946|BC025600|obif	transmembrane protein 119	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150341012-3	chr4	150340514	150341514	+	856.727783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 1 of 22)	intron (NM_001085492, intron 1 of 22)	59098.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	9.5	23.0	27.0	69.5	72.5	34.0
Merged-chr15-5221944-3	chr15	5221449	5222449	+	856.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME2|LINE|L1	22238.0	NM_001136079	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29817795-3	chr2	29817295	29818295	+	856.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011989)	TTS (NM_011989)	-9594.0	NM_026615	68205.0	Mm.20273	NM_026615	ENSMUSG00000069020	Urm1	2900073H19Rik	ubiquitin related modifier 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6707413-3	chr2	6706893	6707893	+	856.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	14269.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-93399373-3	chr15	93398860	93399860	+	856.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001358749, exon 2 of 9)	5' UTR (NM_001358749, exon 2 of 9)	896.0	NM_001285863	223828.0	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167146102-3	chr2	167145603	167146603	+	856.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008420, intron 1 of 1)	B3|SINE|B2	42715.0	NM_008420	16500.0	Mm.205341	NM_008420	ENSMUSG00000050556	Kcnb1	Kcr1-1|Kv2.1|Shab	potassium voltage gated channel, Shab-related subfamily, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67484930-4	chr7	67484440	67485440	+	856.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112082.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106370087-3	chr9	106369529	106370529	+	856.711121	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153459, intron 1 of 2)	intron (NM_153459, intron 1 of 2)	1397.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	15.0	52.0	24.0	17.0	51.5	31.5
Merged-chr2-157373897-4	chr2	157373396	157374396	+	856.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026968, intron 1 of 2)	MARNA|DNA|TcMar-Mariner	6302.0	NM_026968	69161.0	Mm.228619	NM_026968	ENSMUSG00000063019	Manbal	1810024K12Rik|AI836500	mannosidase, beta A, lysosomal-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79768648-2	chr10	79768148	79769148	+	856.7000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-1696.0	NR_027505	70294.0	Mm.466670	NM_144528	ENSMUSG00000035890	Rnf126	2610010O19Rik	ring finger protein 126	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57552616-2	chr9	57552116	57553116	+	856.7000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NR_151692, intron 1 of 7)	CpG	136.0	NR_151692	110119.0	Mm.247218	NM_025837	ENSMUSG00000032306	Mpi	1110002E17Rik|AI315153|Mpi-1|Mpi1	mannose phosphate isomerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122317662-3	chr7	122317165	122318165	+	856.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	ORR1E|LTR|ERVL-MaLR	28540.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45121915-3	chr9	45121401	45122401	+	856.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014761, intron 1 of 3)	intron (NM_001014761, intron 1 of 3)	4025.0	NM_001014761	72821.0	Mm.229373	NM_001014761	ENSMUSG00000070304	Scn2b	2810451E09Rik|AI840361|Gm183	sodium channel, voltage-gated, type II, beta	protein-coding	8.0	0.0	0.0	0.0	0.0	1.0
Merged-chr5-35106142-3	chr5	35105668	35106668	+	856.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013587)	promoter-TSS (NM_013587)	-471.0	NM_013587	16976.0	Mm.277661	NM_013587	ENSMUSG00000029103	Lrpap1	AA617339|AI790446|AU042172|C77774|HBP44|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83385674-4	chr11	83385163	83386163	+	856.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027915, intron 17 of 20)	intron (NM_027915, intron 17 of 20)	-23474.0	NM_001361566	276952.0	Mm.66275	NM_001013386	ENSMUSG00000020684	Rasl10b	B230331P10Rik|Gm729|VTS58635	RAS-like, family 10, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-10351330-3	chr2	10350848	10351848	+	856.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19103.0	NM_001198808	353282.0	Mm.329991	NM_177386	ENSMUSG00000061186	Sfmbt2	D2Wsu23e|D330030P06Rik	Scm-like with four mbt domains 2	protein-coding	1.0	0.5	0.0	0.0	0.0	0.0
Merged-chr19-3930822-3	chr19	3930316	3931316	+	856.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1100.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-49372184-3	chr2	49371684	49372684	+	856.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79302.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117675809-3	chr10	117675308	117676308	+	856.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027468, intron 6 of 8)	intron (NM_027468, intron 6 of 8)	34950.0	NM_010786	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.0	4.0	1.5	0.0	0.0	0.0
Merged-chr2-27734623-3	chr2	27734076	27735076	+	856.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	23993.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33439311-3	chr17	33438815	33439815	+	856.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6416.0	NM_183282	69481.0	Mm.154333	NM_183282	ENSMUSG00000092519	Actl9	1700029I08Rik|AV259599	actin-like 9	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr8-25192076-3	chr8	25191576	25192576	+	856.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177089, intron 2 of 12)	intron (NM_177089, intron 2 of 12)	9466.0	NM_199323	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95701209-3	chr16	95700673	95701673	+	856.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1234.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97444332-3	chr6	97443819	97444819	+	856.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	14967.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33941706-1	chr17	33941206	33942206	+	856.6666869999999	f1_c57bl6.idr	exon (NM_020603, exon 5 of 15)	exon (NM_020603, exon 5 of 15)	983.0	NM_020603	57315.0	Mm.2437	NM_020603	ENSMUSG00000024312	Wdr46	2310007I04Rik|Bing4|C78447|C78559	WD repeat domain 46	protein-coding	16.5	30.5	18.5	14.5	45.0	29.0
Merged-chr11-89000805-6	chr11	89000292	89001292	+	856.638916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009546, intron 1 of 8)	intron (NM_009546, intron 1 of 8)	1389.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	150.5	430.5	309.0	172.5	377.0	303.0
Merged-chr14-76051399-3	chr14	76050896	76051896	+	856.638916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40531.0	NM_026816	68705.0	Mm.20415	NM_026816	ENSMUSG00000067995	Gtf2f2	1110031C13Rik|AI326315	general transcription factor IIF, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127873210-4	chr7	127872702	127873702	+	856.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362192, intron 2 of 4)	intron (NM_001362192, intron 2 of 4)	2440.0	NM_001362192	244219.0	Mm.207872	NM_146259	ENSMUSG00000049728	Zfp668	BC030314|E130018B19Rik|Znf668	zinc finger protein 668	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-19841319-4	chr13	19840875	19841875	+	856.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17118.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	15.5	10.0	22.0	15.5	21.0	37.5
Merged-chr9-21909613-4	chr9	21909137	21910137	+	856.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001324531, exon 5 of 5)	3' UTR (NM_001324531, exon 5 of 5)	8546.0	NM_031874	19340.0	Mm.260157	NM_031874	ENSMUSG00000019066	Rab3d	C130057E11Rik	RAB3D, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143711532-2	chr5	143711032	143712032	+	856.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_029749, intron 17 of 17)	intron (NM_029749, intron 17 of 17)	20748.0	NM_029749	76800.0	Mm.259620	NM_029749	ENSMUSG00000051306	Usp42	2410140K03Rik|3110031A07Rik|A630018G05Rik|D5Ertd591e	ubiquitin specific peptidase 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60209272-4	chr2	60208787	60209787	+	856.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020575)	promoter-TSS (NM_020575)	-649.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83739417-3	chr11	83738928	83739928	+	856.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7512.0	NM_183249	66107.0	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54387890-3	chr14	54387362	54388362	+	856.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	21610.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	15.0	21.5	14.5	23.0	61.5	44.0
Merged-chr16-95932379-4	chr16	95931873	95932873	+	856.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3296.0	NR_040484	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-8823251-4	chr16	8822674	8823674	+	856.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6926.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-90822517-4	chr8	90822014	90823014	+	856.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-6321.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	15.0	41.0	24.0	8.0	6.5	13.5
Merged-chr14-21854946-4	chr14	21854582	21855582	+	856.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_176925, exon 3 of 3)	3' UTR (NM_176925, exon 3 of 3)	-6172.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	6.0	9.0	9.5	2.0	0.0	6.5
Merged-chr5-30851032-3	chr5	30850545	30851545	+	856.5833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133350, intron 1 of 6)	MIRc|SINE|MIR	-10762.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122415768-3	chr8	122415258	122416258	+	856.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029993, intron 17 of 18)	B3|SINE|B2	-6262.0	NM_145834	234836.0	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66447556-3	chr15	66447049	66448049	+	856.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019457, intron 7 of 11)	intron (NM_019457, intron 7 of 11)	53361.0	NM_019457	54562.0	Mm.244890	NM_019457	ENSMUSG00000022375	Lrrc6	LRTP	leucine rich repeat containing 6 (testis)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58509240-4	chr16	58508726	58509726	+	856.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 1 of 10)	intron (NM_001357433, intron 1 of 10)	14200.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135875306-4	chr4	135874792	135875792	+	856.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1446.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-5185609-6	chr15	5185113	5186113	+	856.538879	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026213)	promoter-TSS (NM_026213)	53.0	NM_001355621	67515.0	Mm.254979	NM_026213	ENSMUSG00000022151	Ttc33	2410099M07Rik|2900001O04Rik|AI507072|AW538342|Osrf	tetratricopeptide repeat domain 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5141985-3	chr18	5141478	5142478	+	856.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	23753.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8716682-6	chr15	8716158	8717158	+	856.511108	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5851.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47184022-2	chr19	47183522	47184522	+	856.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021360, intron 1 of 5)	intron (NM_021360, intron 1 of 5)	5202.0	NM_021360	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr9-66942683-2	chr9	66942183	66943183	+	856.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3403.0	NM_001311101	67941.0	Mm.30120	NM_026467	ENSMUSG00000036781	Rps27l	1810034D23Rik	ribosomal protein S27-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-115076966-1	chr7	115076466	115077466	+	856.5	f0_balb.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	125692.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	3.0	0.0	0.0	9.0	1.0	8.0
Merged-chr17-50736079-2	chr17	50735579	50736579	+	856.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001285991, exon 23 of 23)	exon (NM_001285991, exon 23 of 23)	37398.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	16.5	9.5	15.5	6.5	3.5	3.5
Merged-chr2-46149987-4	chr2	46149477	46150477	+	856.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	453372.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-130640556-2	chr7	130640056	130641056	+	856.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004468, intron 3 of 21)	intron (NM_001004468, intron 3 of 21)	-52000.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80070078-2	chr7	80069578	80070578	+	856.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045695, intron 1 of 2)	intron (NR_045695, intron 1 of 2)	5179.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	0.5	10.0	12.5	4.0	17.5	10.5
Merged-chr7-27233735-2	chr7	27233235	27234235	+	856.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133770, exon 3 of 15)	exon (NM_133770, exon 3 of 15)	722.0	NM_133770	76889.0	Mm.124728	NM_133770	ENSMUSG00000003762	Coq8b	0610012P18Rik|Adck4	coenzyme Q8B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117853227-2	chr11	117852727	117853727	+	856.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001012273, exon 3 of 3)	3' UTR (NM_001012273, exon 3 of 3)	3990.0	NM_009689	11799.0	Mm.8552	NM_009689	ENSMUSG00000017716	Birc5	AAC-11|Api4|TIAP|survivin40	baculoviral IAP repeat-containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82746315-2	chr11	82745815	82746815	+	856.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009839, intron 5 of 13)	B3|SINE|B2	18006.0	NM_009839	12467.0	Mm.4126	NM_009839	ENSMUSG00000020698	Cct6b	CCT-zeta-2|CCTzeta-2|Cctz-2|TCP-1-zeta-2	chaperonin containing Tcp1, subunit 6b (zeta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30920034-2	chr5	30919534	30920534	+	856.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133918, intron 6 of 7)	intron (NM_133918, intron 6 of 7)	-1525.0	NM_001310525	16548.0	Mm.22451	NM_008439	ENSMUSG00000029162	Khk	-	ketohexokinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4937771-2	chr16	4937271	4938271	+	856.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001357061, exon 16 of 16)	3' UTR (NM_001357061, exon 16 of 16)	-1340.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155095921-3	chr1	155095483	155096483	+	856.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010500)	TTS (NM_010500)	3653.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115482255-2	chr11	115481755	115482755	+	856.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177778, intron 2 of 2)	intron (NM_177778, intron 2 of 2)	6588.0	NM_001361594	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139323755-2	chr5	139323255	139324255	+	856.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 1 of 10)	MIRb|SINE|MIR	1709.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98875613-2	chr15	98875113	98876113	+	856.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4408.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113737190-2	chr5	113736690	113737690	+	856.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001010825, intron 2 of 2)	intron (NM_001010825, intron 2 of 2)	1408.0	NM_001010825	231630.0	Mm.21926	NM_001010825	ENSMUSG00000053334	Ficd	D5Ertd40e|Hype	FIC domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-110718095-2	chr8	110717595	110718595	+	856.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151675, intron 17 of 17)	MTD|LTR|ERVL-MaLR	-3381.0	NM_198625	244654.0	Mm.490385	NM_198625	ENSMUSG00000033763	Mtss1l	ABBA	metastasis suppressor 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-58408227-2	chr3	58407727	58408727	+	856.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6493.0	NM_001081229	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33949666-2	chr16	33949166	33950166	+	856.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010580)	TTS (NM_010580)	17372.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123038708-2	chr8	123038211	123039211	+	856.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	3573.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	5.5	4.0	12.0	4.0	1.5	14.5
Merged-chr4-117181707-2	chr4	117181207	117182207	+	856.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134471, intron 1 of 19)	intron (NM_134471, intron 1 of 19)	917.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-38483264-2	chr5	38482764	38483764	+	856.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145559, intron 2 of 10)	intron (NM_145559, intron 2 of 10)	121.0	NM_001012363	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34169472-3	chr17	34168972	34169972	+	856.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16281.0	NM_010387	14999.0	Mm.460938	NM_010387	ENSMUSG00000079547	H2-DMb1	AI385589|H-2Mb1|H2-Mb1	histocompatibility 2, class II, locus Mb1	protein-coding	1.5	4.5	2.0	2.0	1.5	0.0
Merged-chr16-22362177-2	chr16	22361677	22362677	+	856.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1-int|LTR|ERVL-MaLR	67189.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8940913-2	chr3	8940413	8941413	+	856.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025263, intron 4 of 6)	intron (NM_001025263, intron 4 of 6)	-17056.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5919101-2	chr19	5918601	5919601	+	856.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026772, intron 1 of 1)	PB1D10|SINE|Alu	5715.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-16943700-4	chr6	16943194	16944194	+	856.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45253.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-52679641-2	chr18	52679141	52680141	+	856.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14038.0	NM_010293	14625.0	Mm.32242	NM_010293	ENSMUSG00000053624	Gykl1	AI449806|Gk-rs1	glycerol kinase-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55713197-2	chr14	55712697	55713697	+	856.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019984)	promoter-TSS (NM_019984)	-109.0	NM_019984	21816.0	Mm.41964	NM_019984	ENSMUSG00000022218	Tgm1	2310004J08Rik|Tgase1	transglutaminase 1, K polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39199964-2	chr18	39199454	39200454	+	856.458374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 11 of 21)	intron (NM_001361073, intron 11 of 21)	206809.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	17.0	11.0	5.0	3.0	7.5	0.0
Merged-chr8-110266148-4	chr8	110265690	110266690	+	856.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172916)	promoter-TSS (NM_172916)	-787.0	NM_172916	244653.0	Mm.444803	NM_172916	ENSMUSG00000059854	Hydin	1700034M11Rik|4930545D19Rik|4932703P14|672398|A830061H17|AC069308.21gm4|Gm9558|hy-3|hy3|hyrh	HYDIN, axonemal central pair apparatus protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53345640-4	chr15	53345100	53346100	+	856.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010162, exon 1 of 11)	5' UTR (NM_010162, exon 1 of 11)	583.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-69666922-4	chr18	69666396	69667396	+	856.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 15 of 19)	intron (NM_001361128, intron 15 of 19)	-258663.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-99126991-4	chr4	99126496	99127496	+	856.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-6081.0	NM_026082	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9731168-3	chr18	9730670	9731670	+	856.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	23522.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	7.5	13.5	7.5	23.5	52.5	37.0
Merged-chr8-106574554-3	chr8	106574035	106575035	+	856.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12608.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113605602-3	chr13	113605125	113606125	+	856.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	12939.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-16312245-4	chr9	16311772	16312772	+	856.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 1 of 24)	intron (NM_001080814, intron 1 of 24)	65959.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83159124-4	chr8	83158620	83159620	+	856.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6232.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	36.5	82.0	48.5	24.5	90.0	27.5
Merged-chr12-78916027-2	chr12	78915536	78916536	+	856.400024	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-9098.0	NM_013738	27260.0	Mm.103380	NM_013738	ENSMUSG00000021118	Plek2	-	pleckstrin 2	protein-coding	0.0	1.5	4.5	9.0	15.5	12.0
Merged-chr19-5592056-4	chr19	5591555	5592555	+	856.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9818.0	NM_026616	68209.0	Mm.246200	NM_026616	ENSMUSG00000024925	Rnaseh2c	1500026D16Rik|AYP1	ribonuclease H2, subunit C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-54005688-3	chr5	54005172	54006172	+	856.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	7149.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29720944-3	chr11	29720503	29721503	+	856.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024226, intron 1 of 6)	intron (NM_024226, intron 1 of 6)	2440.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	25.5	78.5	52.0	36.0	57.5	48.5
Merged-chr13-9738314-3	chr13	9737814	9738814	+	856.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347474, intron 1 of 14)	intron (NM_001347474, intron 1 of 14)	25496.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36736044-2	chr18	36735594	36736594	+	856.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_028036, intron 2 of 11)	PB1D10|SINE|Alu	1024.0	NM_028036	71983.0	Mm.135188	NM_028036	ENSMUSG00000006850	Tmco6	2410015B03Rik	transmembrane and coiled-coil domains 6	protein-coding	1.5	0.5	1.0	3.5	4.0	4.5
Merged-chr1-43264642-4	chr1	43264147	43265147	+	856.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67886.0	NM_001289533	14200.0	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147418944-4	chr5	147418438	147419438	+	856.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033625, intron 1 of 2)	intron (NR_033625, intron 1 of 2)	318.0	NR_033625	100039805.0	Mm.394705	NR_033625	ENSMUSG00000106820	D5Ertd605e	Gm2433	DNA segment, Chr 5, ERATO Doi 605, expressed	ncRNA	14.0	38.0	12.5	32.0	16.5	36.0
Merged-chr4-33209564-2	chr4	33209064	33210064	+	856.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177774, intron 1 of 2)	CpG	573.0	NM_001356473	272009.0	Mm.156636	NM_177774	ENSMUSG00000054679	Srsf12	B830039L16|Sfrs13b|Srrp|Srsf13b	serine/arginine-rich splicing factor 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-58413895-2	chr3	58413395	58414395	+	856.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081229)	promoter-TSS (NM_001081229)	-825.0	NM_001081229	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101392065-2	chr7	101391565	101392565	+	856.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 13 of 33)	intron (NM_001040111, intron 13 of 33)	-2323.0	NM_198096	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-104447892-4	chr7	104447409	104448409	+	856.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009099, intron 1 of 7)	Lx|LINE|L1	-1784.0	NM_001357467	20128.0	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124424498-3	chr5	124423996	124424996	+	856.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081203, intron 1 of 31)	intron (NM_001081203, intron 1 of 31)	1106.0	NM_001359979	243272.0	Mm.23879	NM_145631	ENSMUSG00000038095	Sbno1	9330180L10Rik|AI849128|AW557836|BC021875|Sbno|mSno1|sno	strawberry notch 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112605397-2	chr12	112604897	112605897	+	856.3333130000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_198411, exon 9 of 23)	exon (NM_198411, exon 9 of 23)	-14650.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96196951-3	chr9	96196470	96197470	+	856.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178667, intron 1 of 13)	intron (NM_178667, intron 1 of 13)	695.0	NM_001184708	211586.0	Mm.17977	NM_178667	ENSMUSG00000032411	Tfdp2	1110029I05Rik|A330080J22Rik|DP-3|DP3	transcription factor Dp 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80386830-3	chr10	80386268	80387268	+	856.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198615, exon 1 of 2)	exon (NM_198615, exon 1 of 2)	883.0	NM_198615	237400.0	Mm.268389	NM_198615	ENSMUSG00000048696	Mex3d	BC059858|Rkhd1	mex3 RNA binding family member D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109246224-3	chr3	109245733	109246733	+	856.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94450.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	5.0	10.0	6.0	3.0	6.5	8.0
Merged-chr3-89393040-4	chr3	89392522	89393522	+	856.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355211)	promoter-TSS (NM_001355211)	356.0	NM_009565	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88256481-3	chr1	88256015	88257015	+	856.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001281466, exon 36 of 42)	exon (NM_001281466, exon 36 of 42)	12893.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-112457201-1	chr2	112456701	112457701	+	856.3333130000001	f0_balb.idr	intron (NM_133749, intron 1 of 4)	intron (NM_133749, intron 1 of 4)	2176.0	NM_133749	73024.0	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr10-51484275-3	chr10	51483768	51484768	+	856.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008147, intron 6 of 8)	intron (NM_008147, intron 6 of 8)	3656.0	NM_001291892	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84120109-3	chr17	84119627	84120627	+	856.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41467.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34901812-3	chr8	34901314	34902314	+	856.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 3 of 26)	intron (NM_175091, intron 3 of 26)	63876.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	6.0	3.5	19.0	8.5	18.5	2.0
Merged-chr11-85505959-3	chr11	85505453	85506453	+	856.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 15 of 25)	intron (NM_138681, intron 15 of 25)	152789.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-151748499-3	chr2	151747989	151748989	+	856.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_138568, exon 3 of 3)	non-coding (NR_138568, exon 3 of 3)	2976.0	NR_138568	75283.0	Mm.195735	NM_029235		4930556L07Rik	1700020P01Rik|4930593I08Rik	RIKEN cDNA 4930556L07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50161738-3	chr11	50161212	50162212	+	856.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029745, intron 16 of 20)	intron (NM_029745, intron 16 of 20)	-13139.0	NM_026543	68067.0	Mm.40828	NM_026543	ENSMUSG00000020381	Mrnip	2900016G09Rik|3010026O09Rik|AI851514|AW475975	MRN complex interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133236832-1	chr4	133236332	133237332	+	856.3333130000001	f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-3986.0	NM_016693	53608.0	Mm.36640	NM_016693	ENSMUSG00000028862	Map3k6	Ask2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding	10.0	11.5	3.0	2.0	1.5	0.5
Merged-chr17-27800898-3	chr17	27800390	27801390	+	856.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033279, intron 1 of 4)	intron (NM_001033279, intron 1 of 4)	19652.0	NM_001033279	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	0.5	4.5	0.0	2.0	12.0	2.5
Merged-chr6-34350390-4	chr6	34349878	34350878	+	856.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3768.0	NM_008012	14187.0	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21621791-4	chr10	21621285	21622285	+	856.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027968, exon 3 of 3)	non-coding (NR_027968, exon 3 of 3)	28640.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-63564954-4	chr13	63564420	63565420	+	856.279175	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001328514, intron 1 of 23)	CpG-3956	815.0	NM_008957	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-23920076-3	chr5	23919559	23920559	+	856.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310471, intron 10 of 10)	RMER10A|LTR|ERVL	67826.0	NR_028536	100217436.0		NR_028536		Snord93	Gm22397|MBII-336	small nucleolar RNA, C/D box 93	snoRNA	0.0	7.5	2.0	15.0	7.0	15.5
Merged-chr2-59976565-4	chr2	59976037	59977037	+	856.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 6 of 35)	intron (NM_001001182, intron 6 of 35)	-93931.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96362177-2	chr9	96361677	96362677	+	856.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357213, intron 1 of 7)	intron (NM_001357213, intron 1 of 7)	1538.0	NM_001357213	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	5.5	12.5	0.0	1.5	0.5	1.5
Merged-chr19-21064694-3	chr19	21064196	21065196	+	856.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40014.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	3.0	9.5	0.0	0.0	1.5	3.0
Merged-chr15-27613007-4	chr15	27612513	27613513	+	856.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013792, intron 4 of 6)	intron (NM_001013792, intron 4 of 6)	17680.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55529488-2	chr4	55528988	55529988	+	856.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_010637, intron 4 of 4)	intron (NM_010637, intron 4 of 4)	2987.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	7.5	1.5	0.5	0.0	0.0	0.0
Merged-chr14-31136584-2	chr14	31136084	31137084	+	856.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_027289, intron 8 of 12)	intron (NM_027289, intron 8 of 12)	1731.0	NM_027289	70021.0	Mm.261681	NM_027289	ENSMUSG00000071547	Nt5dc2	2510015F01Rik	5'-nucleotidase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56375713-4	chr19	56375197	56376197	+	856.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008733, intron 11 of 41)	B4A|SINE|B4	14341.0	NM_198059	18175.0	Mm.386769	NM_008733	ENSMUSG00000049134	Nrap	-	nebulin-related anchoring protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54365467-3	chr14	54364972	54365972	+	856.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026936, intron 3 of 9)	intron (NM_026936, intron 3 of 9)	4631.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	3.5	32.0	37.0	7.5	38.0	27.0
Merged-chr6-146796061-4	chr6	146795579	146796579	+	856.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9451.0	NM_001289680	272322.0	Mm.333500	NM_172309	ENSMUSG00000040187	Arntl2	4632430A05Rik|BMAL2|CLIF|MOP9|bHLHe6	aryl hydrocarbon receptor nuclear translocator-like 2	protein-coding	6.0	0.0	2.0	4.5	0.0	1.5
Merged-chr2-112240464-4	chr2	112239991	112240991	+	856.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207206, intron 1 of 13)	intron (NM_207206, intron 1 of 13)	650.0	NM_207206	99010.0	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25256132-4	chr8	25255608	25256608	+	856.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50162.0	NR_040352	74489.0	Mm.256468	NR_040352	ENSMUSG00000110140	5430421F17Rik	-	RIKEN cDNA 5430421F17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72554646-4	chr5	72554213	72555213	+	856.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153351, intron 3 of 21)	intron (NR_153351, intron 3 of 21)	4932.0	NM_001359837	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143626389-3	chr5	143625884	143626884	+	856.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011182, intron 1 of 12)	LTR33A_|LTR|ERVL	3937.0	NM_011182	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122702383-3	chr8	122701893	122702893	+	856.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3284.0	NM_009824	12398.0	Mm.194339	NM_009824	ENSMUSG00000006362	Cbfa2t3	A630044F12Rik|AI465270|AW229127|Cbfa2t3h|ETO-2|Eto2|MTGR2	core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106241624-3	chr1	106241131	106242131	+	856.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	69762.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-12206647-3	chr5	12206147	12207147	+	856.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-176519.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145243268-4	chr7	145242798	145243798	+	856.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132644, intron 24 of 24)	intron (NR_132644, intron 24 of 24)	-35179.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	0.0	0.0	3.0	2.0	0.0	5.5
Merged-chr7-45739547-4	chr7	45739016	45740016	+	856.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360784, intron 1 of 5)	intron (NM_001360784, intron 1 of 5)	2962.0	NM_001360784	54200.0	Mm.271634	NM_017465	ENSMUSG00000003271	Sult2b1	AI326997|BB173635|ST2B1|SULT2B	sulfotransferase family, cytosolic, 2B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115813558-2	chr11	115813058	115814058	+	856.2000119999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080643)	promoter-TSS (NM_080643)	34.0	NM_080643	140721.0	Mm.383737	NM_080643	ENSMUSG00000034471	Caskin2	1600028L06Rik|mKIAA1139	CASK-interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129590941-2	chr2	129590428	129591428	+	856.2000119999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1911.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	10.5	22.0	21.0	36.0	34.0	32.0
Merged-chr3-51778470-3	chr3	51777964	51778964	+	856.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	117285.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-41348952-3	chr3	41348475	41349475	+	856.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	144224.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr8-82367000-4	chr8	82366527	82367527	+	856.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008357, intron 2 of 7)	L1_Mus3|LINE|L1	35559.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	5.0	9.5	8.0	1.5	16.0	4.5
Merged-chr1-136676508-4	chr1	136676014	136677014	+	856.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6882.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139792639-3	chr5	139792122	139793122	+	856.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010757, intron 1 of 2)	intron (NM_010757, intron 1 of 2)	1086.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118244617-2	chr7	118244117	118245117	+	856.1666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001031814)	promoter-TSS (NM_001031814)	710.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21909114-3	chr16	21908601	21909601	+	856.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172821, intron 7 of 12)	intron (NM_172821, intron 7 of 12)	17132.0	NM_172821	71751.0	Mm.420837	NM_172821	ENSMUSG00000033618	Map3k13	C130026N12Rik|LZK	mitogen-activated protein kinase kinase kinase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-20938345-2	chr5	20937845	20938845	+	856.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080977, intron 1 of 7)	B1_Mus1|SINE|Alu	-12644.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88558571-2	chr5	88558071	88559071	+	856.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4109.0	NM_023054	65961.0	Mm.490364	NM_023054	ENSMUSG00000070697	Utp3	2400011K09Rik|AW557551|C87704|Crl-1|Crl1|Crlz1|Sas10	UTP3 small subunit processome component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107555804-2	chr9	107555307	107556307	+	856.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019713, intron 1 of 4)	intron (NM_019713, intron 1 of 4)	1224.0	NM_019713	56289.0	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	64.0	114.0	84.0	31.0	127.0	62.5
Merged-chr7-127104726-4	chr7	127104219	127105219	+	856.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13283.0	NM_178901	101602.0	Mm.490357	NM_178901	ENSMUSG00000045165	AI467606	-	expressed sequence AI467606	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr2-59183698-2	chr2	59183198	59184198	+	856.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	22848.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95954435-4	chr3	95954041	95955041	+	856.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	YREP_Mm|Unknown|Unknown	25284.0	NM_023210	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	2.0	12.5	18.0	1.0	7.0	9.5
Merged-chr2-128777401-2	chr2	128776901	128777901	+	856.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 10 of 18)	intron (NM_008587, intron 10 of 18)	-40902.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0.0	0.0	4.5	0.0	2.0	5.5
Merged-chr13-69559323-2	chr13	69558824	69559824	+	856.125	f0_balb.idr|f1_balb.idr	Intergenic	ERVL-E-int|LTR|ERVL	-25460.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	0.0	0.0	1.0	25.5	24.5	13.0
Merged-chr14-60916849-3	chr14	60916369	60917369	+	856.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	121118.0	NM_001164155	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44029757-3	chr10	44029256	44030256	+	856.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-24910.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148548720-3	chr5	148548191	148549191	+	856.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	2982.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	1.0	19.0	9.0	3.5	4.5	6.0
Merged-chr2-145823863-3	chr2	145823376	145824376	+	856.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	37760.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-81916269-4	chr18	81915753	81916753	+	856.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	75827.0	NR_039589	100628596.0		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96713325-4	chr9	96712838	96713838	+	856.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359959, intron 2 of 2)	intron (NM_001359959, intron 2 of 2)	6107.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75895944-4	chr18	75895454	75896454	+	856.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145356, intron 1 of 4)	intron (NM_145356, intron 1 of 4)	75776.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	3.5	21.5	11.0	3.0	7.0	1.0
Merged-chr2-112449348-4	chr2	112448855	112449855	+	856.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5670.0	NM_133749	73024.0	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75439779-2	chr10	75439279	75440279	+	856.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133995, intron 9 of 9)	(TTG)n|Simple_repeat|Simple_repeat	-9731.0	NR_045841	71125.0	Mm.399516	NR_045841		4933407G14Rik	-	RIKEN cDNA 4933407G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30693880-2	chr2	30693380	30694380	+	856.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15869.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3158022-2	chr11	3157529	3158529	+	856.083374	f0_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 10 of 32)	intron (NM_030207, intron 10 of 32)	34008.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	2.5	0.0	0.5
Merged-chr11-19021489-3	chr11	19020989	19021989	+	856.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2520.0	NM_010789	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	1.0	0.0	0.5	1.0	0.0	0.5
Merged-chr3-106482669-7	chr3	106482139	106483139	+	856.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033207, exon 2 of 2)	non-coding (NR_033207, exon 2 of 2)	189.0	NM_001278941	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90062079-4	chr9	90061559	90062559	+	856.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007801, intron 3 of 11)	intron (NM_007801, intron 3 of 11)	7792.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	35.0	71.0	33.0	40.0	126.0	47.0
Merged-chr1-135510449-3	chr1	135509944	135510944	+	856.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173437, intron 3 of 28)	intron (NM_173437, intron 3 of 28)	-55761.0	NR_049188	100885827.0		NR_049188	ENSMUSG00000093515	Mir1231	Gm23720|mir-1231|mmu-mir-1231	microRNA 1231	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32342928-4	chr11	32342436	32343436	+	856.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4875.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-63653513-3	chr18	63653006	63654006	+	856.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38853.0	NM_016792	53382.0	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88620885-8	chr3	88620370	88621370	+	856.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008487)	promoter-TSS (NM_008487)	-236.0	NM_008487	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	26.0	78.0	88.5	38.5	66.5	76.0
Merged-chr9-92265922-4	chr9	92265384	92266384	+	856.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011636, intron 5 of 8)	intron (NM_011636, intron 5 of 8)	1477.0	NR_105808	102465203.0		NR_105808	ENSMUSG00000098766	Mir6386	Gm27842|mmu-mir-6386	microRNA 6386	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75872932-4	chr10	75872362	75873362	+	856.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12G|LTR|ERVK	-12612.0	NM_010798	17319.0	Mm.2326	NM_010798	ENSMUSG00000033307	Mif	GIF|Glif	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-95449943-4	chr1	95449454	95450454	+	856.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136326.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-105735430-5	chr7	105734863	105735863	+	856.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133951, intron 1 of 6)	intron (NM_133951, intron 1 of 6)	1221.0	NM_025897	101867.0	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83757096-4	chr8	83756592	83757592	+	856.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15781.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	0.0	2.0	0.5	0.0	0.5	0.0
Merged-chr1-134074019-20	chr1	134073394	134074394	+	856.0324710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007570)	TTS (NM_007570)	5261.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122434101-2	chr8	122433601	122434601	+	856.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_138656, exon 10 of 10)	exon (NM_138656, exon 10 of 10)	-1161.0	NM_007806	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-19707164-2	chr14	19706664	19707664	+	856.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44093.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32437240-2	chr2	32436740	32437740	+	856.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146118, intron 1 of 10)	L1MEc|LINE|L1	-6089.0	NM_001164358	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128549830-2	chr10	128549330	128550330	+	856.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018860)	promoter-TSS (NM_018860)	-662.0	NM_018860	67945.0	Mm.290786	NM_018860	ENSMUSG00000093674	Rpl41	1810055P16Rik|2210411K19Rik	ribosomal protein L41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72989251-2	chr6	72988833	72989833	+	856.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30585.0	NM_001190327	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	0.0	4.5	8.0	0.0	2.0	0.5
Merged-chr17-87024538-2	chr17	87024038	87025038	+	856.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008838, intron 1 of 5)	intron (NM_008838, intron 1 of 5)	863.0	NM_008838	18701.0	Mm.219685	NM_008838	ENSMUSG00000024145	Pigf	-	phosphatidylinositol glycan anchor biosynthesis, class F	protein-coding	18.0	38.0	29.5	16.0	20.5	18.5
Merged-chr11-101559250-2	chr11	101558750	101559750	+	856.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008676, intron 4 of 23)	intron (NM_008676, intron 4 of 23)	6596.0	NM_001252223	17966.0	Mm.784	NM_008676	ENSMUSG00000017119	Nbr1	mKIAA0049	neighbor of Brca1 gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50803351-2	chr14	50802861	50803861	+	856.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	4410.0	NR_002142	85029.0		NR_002142	ENSMUSG00000092837	Rpph1	Gm24821|H1RNA|Rmrp5|Rpr	ribonuclease P RNA component H1	ncRNA	0.0	0.0	0.5	9.5	3.0	1.5
Merged-chr4-109760746-2	chr4	109760246	109761246	+	856.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007983, intron 7 of 18)	intron (NM_007983, intron 7 of 18)	84119.0	NM_007983	14084.0	Mm.318259	NM_007983	ENSMUSG00000010517	Faf1	AA408698|Dffrx|Fam	Fas-associated factor 1	protein-coding	6.5	3.5	6.5	4.5	9.0	5.0
Merged-chr1-167332398-2	chr1	167331898	167332898	+	856.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001039483, exon 7 of 7)	3' UTR (NM_001039483, exon 7 of 7)	-17593.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-78311494-2	chr5	78310994	78311994	+	856.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	846006.0	NR_131050	69370.0	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-52287563-3	chr9	52287054	52288054	+	856.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119443.0	NM_001162921	244871.0	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138843293-2	chr1	138842793	138843793	+	856.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042577)	promoter-TSS (NM_001042577)	-849.0	NM_001025565	16876.0	Mm.250732	NM_010714	ENSMUSG00000019230	Lhx9	3110009O07Rik|BB104635|LH2B	LIM homeobox protein 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25848250-2	chr17	25847750	25848750	+	856.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163766, intron 33 of 40)	intron (NM_001163766, intron 33 of 40)	-3399.0	NM_145999	214952.0	Mm.40907	NM_145999	ENSMUSG00000025733	Rhot2	Arht2|Miro2	ras homolog family member T2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41017173-4	chr13	41016641	41017641	+	856.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_025387, exon 2 of 6)	5' UTR (NM_025387, exon 2 of 6)	891.0	NM_001360770	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31454179-2	chr15	31453679	31454679	+	856.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145852)	promoter-TSS (NM_145852)	-490.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120582372-3	chr9	120581862	120582862	+	856.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5031.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144005964-2	chr2	144005464	144006464	+	856.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	5299.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-33994425-3	chr1	33993940	33994940	+	856.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276764, intron 3 of 102)	intron (NM_001276764, intron 3 of 102)	-17385.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-64594535-2	chr18	64594035	64595035	+	856.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001488, intron 2 of 27)	intron (NM_001001488, intron 2 of 27)	66465.0	NM_001001488	54670.0	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-103995629-2	chr12	103995145	103996145	+	856.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001361910)	TTS (NM_001361910)	-5688.0	NM_001166350	380780.0	Mm.201338	NM_199314	ENSMUSG00000063232	Serpina11	Gm895	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11	protein-coding	1.5	0.0	0.0	0.0	0.0	0.5
Merged-chr4-129385854-3	chr4	129385355	129386355	+	856.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151530, intron 1 of 2)	MTD|LTR|ERVL-MaLR	3136.0	NR_151530	320896.0	Mm.404042	NR_151530		C330020E22Rik	-	RIKEN cDNA C330020E22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63124759-2	chr9	63124259	63125259	+	856.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22221.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99379179-2	chr7	99378679	99379679	+	856.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2339.0	NM_001362168	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62504928-3	chr10	62504447	62505447	+	856.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 2 of 3)	B1_Mur4|SINE|Alu	2810.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38556016-2	chr2	38555516	38556516	+	856.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021606, intron 2 of 9)	intron (NM_021606, intron 2 of 9)	44140.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95777372-3	chr13	95776822	95777822	+	856.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 2 of 35)	intron (NM_027711, intron 2 of 35)	80402.0	NM_010170	14064.0	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	15.0	0.0	7.0	1.0	6.0	2.0
Merged-chr6-108826237-1	chr6	108825737	108826737	+	856.0	f0_balb.idr	Intergenic	Intergenic	-2404.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0.0	4.5	0.0	0.0	4.0	0.0
Merged-chr7-80091940-2	chr7	80091440	80092440	+	856.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001146000, exon 6 of 6)	3' UTR (NM_001146000, exon 6 of 6)	-16683.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104030945-3	chr3	104030460	104031460	+	856.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133853, intron 15 of 21)	intron (NM_133853, intron 15 of 21)	-62644.0	NR_030676	100125931.0	Mm.400392	NR_030676	ENSMUSG00000089998	Phtf1os	A130049A11Rik	putative homeodomain transcription factor 1, opposite strand	ncRNA	0.0	1.0	1.0	2.5	6.0	9.5
Merged-chr2-155336442-3	chr2	155335934	155336934	+	856.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004721, intron 3 of 11)	intron (NM_001004721, intron 3 of 11)	-20383.0	NR_030475	735287.0		NR_030475	ENSMUSG00000076216	Mir695	Mirn695|mmu-mir-695	microRNA 695	ncRNA	8.5	0.5	1.0	3.0	6.0	2.0
Merged-chr4-34084190-2	chr4	34083690	34084690	+	856.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-34123.0	NM_026293	67652.0	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64088524-2	chr9	64088024	64089024	+	856.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_040743)	TTS (NR_040743)	7763.0	NR_040743	76814.0	Mm.243771	NR_040743		Scarletltr	2600006L11Rik	Scarletltr, erythroid developmental long intergenic non-protein coding transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44001300-1	chr7	44000800	44001800	+	856.0	f1_balb.idr	Intergenic	Intergenic	5423.0	NM_010640	16613.0	Mm.443378	NM_010640	ENSMUSG00000044485	Klk1b11	Klk11|mGK-11	kallikrein 1-related peptidase b11	protein-coding	0.0	3.0	0.0	0.0	5.5	1.5
Merged-chr5-90895489-2	chr5	90894989	90895989	+	856.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	4244.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0.0	0.0	6.0	3.0	8.5	1.5
Merged-chr7-31208759-1	chr7	31208259	31209259	+	856.0	f1_c57bl6.idr	Intergenic	Intergenic	46401.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	12.0	52.5	30.5	14.5	75.0	50.0
Merged-chr1-183298193-4	chr1	183297670	183298670	+	856.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027861)	promoter-TSS (NM_027861)	-877.0	NR_151660	71678.0	Mm.392270	NM_027861	ENSMUSG00000046836	Brox	0610010K06Rik	BRO1 domain and CAAX motif containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-94158648-3	chr6	94158150	94159150	+	856.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130996, intron 1 of 1)	intron (NR_130996, intron 1 of 1)	78792.0	NR_130996	78178.0	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16171792-1	chr7	16171292	16172292	+	856.0	f1_balb.idr	Intergenic	Intergenic	-3603.0	NM_001277988	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	4.0	1.0	1.5	4.5	0.0	4.0
Merged-chr16-33408540-3	chr16	33408039	33409039	+	856.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358569, intron 1 of 8)	MTD|LTR|ERVL-MaLR	8094.0	NM_001358569	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-26636485-2	chr14	26635985	26636985	+	856.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1649.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94528383-2	chr8	94527883	94528883	+	856.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4645.0	NM_153507	234577.0	Mm.291815	NM_153507	ENSMUSG00000034361	Cpne2	3322401K10Rik	copine II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-19867764-4	chr4	19867275	19868275	+	855.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49048.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66114116-4	chr9	66113607	66114607	+	855.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019727, intron 1 of 14)	intron (NM_019727, intron 1 of 14)	10779.0	NM_019727	56440.0	Mm.271891	NM_019727	ENSMUSG00000032382	Snx1	-	sorting nexin 1	protein-coding	10.0	12.5	35.5	18.5	33.5	26.0
Merged-chr12-27313140-3	chr12	27312629	27313629	+	855.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29589.0	NM_009234	20666.0	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	3.0	7.0	10.0	14.5	48.0	35.0
Merged-chr7-25436872-4	chr7	25436384	25437384	+	855.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015569, intron 4 of 6)	intron (NR_015569, intron 4 of 6)	-23998.0	NM_153576	232983.0	Mm.10545	NM_153576	ENSMUSG00000060188	Cxcl17	VCC-1|Vcc1	chemokine (C-X-C motif) ligand 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154968204-5	chr4	154967740	154968740	+	855.93335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172990, intron 1 of 18)	PB1D10|SINE|Alu	4117.0	NR_131230	269614.0	Mm.30042	NM_172990	ENSMUSG00000029056	Pank4	D030031I12Rik|R75150	pantothenate kinase 4	protein-coding	5.0	30.5	27.5	2.5	0.0	7.0
Merged-chr14-52083291-4	chr14	52082802	52083802	+	855.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016884, intron 3 of 8)	intron (NM_016884, intron 3 of 8)	13987.0	NR_028552	100217457.0		NR_028552	ENSMUSG00000064871	Snord58b	MBII-199	small nucleolar RNA, C/D box 58B	snoRNA	5.0	8.5	6.0	6.5	7.0	5.5
Merged-chr5-31049481-4	chr5	31048943	31049943	+	855.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177621)	promoter-TSS (NM_001177621)	-519.0	NM_001177622	330064.0	Mm.205463	NM_177870	ENSMUSG00000006641	Slc5a6	E430023I20	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-176832201-4	chr1	176831633	176832633	+	855.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 5 of 18)	intron (NM_001357390, intron 5 of 18)	4000.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	9.0	10.0	17.5	9.0	23.5	8.0
Merged-chr11-115639951-2	chr11	115639451	115640451	+	855.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-11656.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30416422-2	chr7	30415953	30416953	+	855.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011662, intron 4 of 4)	intron (NM_011662, intron 4 of 4)	2665.0	NM_011662	22177.0	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	9.5	119.0	65.0	61.5	80.0	50.5
Merged-chr15-80458241-4	chr15	80457704	80458704	+	855.912476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163189, intron 5 of 5)	intron (NM_001163189, intron 5 of 5)	-19601.0	NR_155274	102633578.0	Mm.397484	NR_155274	ENSMUSG00000115888	Gm31369	-	predicted gene, 31369	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158606613-3	chr2	158606114	158607114	+	855.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040358, intron 1 of 2)	intron (NR_040358, intron 1 of 2)	4109.0	NR_040358	100045469.0	Mm.143404	NR_040358	ENSMUSG00000086496	Gm14204	-	predicted gene 14204	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-24710824-3	chr12	24710260	24711260	+	855.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_009104, intron 5 of 9)	B3|SINE|B2	2506.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	24.0	96.0	66.0	28.5	108.5	53.5
Merged-chr10-37280082-4	chr10	37279571	37280571	+	855.8875119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-141145.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101188184-4	chr15	101187660	101188660	+	855.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007395, intron 1 of 8)	intron (NM_007395, intron 1 of 8)	-5709.0	NR_105927	102466774.0		NR_105927	ENSMUSG00000106563	Mir6962	mmu-mir-6962	microRNA 6962	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-68282790-4	chr7	68282282	68283282	+	855.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013811, intron 1 of 8)	intron (NM_001013811, intron 1 of 8)	-6188.0	NR_040340	100504026.0	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	-	predicted gene 16157	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-26322865-4	chr10	26322367	26323367	+	855.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359255, intron 12 of 21)	intron (NM_001359255, intron 12 of 21)	51205.0	NM_001359255	237339.0	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	L3MBTL3 histone methyl-lysine binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84686936-4	chr3	84686419	84687419	+	855.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177260, intron 3 of 6)	intron (NM_177260, intron 3 of 6)	20727.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-99670986-4	chr6	99670500	99671500	+	855.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4229.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24150313-4	chr10	24149852	24150852	+	855.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016797, intron 1 of 9)	intron (NM_016797, intron 1 of 9)	1035.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36614788-3	chr1	36614303	36615303	+	855.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201365, intron 6 of 9)	MTD|LTR|ERVL-MaLR	-21471.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3983870-2	chr12	3983370	3984370	+	855.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082483, intron 6 of 22)	intron (NM_001082483, intron 6 of 22)	28925.0	NM_001278583	18976.0	Mm.277996	NM_008895	ENSMUSG00000020660	Pomc	ACTH|BE|Beta-LPH|Clip|Gamma-LPH|Npp|Pomc-1|Pomc1|alpha-MSH|alphaMSH|beta-MSH|gamma-MSH	pro-opiomelanocortin-alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167314179-2	chr2	167313679	167314679	+	855.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	34999.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86811565-2	chr11	86811065	86812065	+	855.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3905.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63943951-2	chr14	63943451	63944451	+	855.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_011446, exon 1 of 2)	exon (NM_011446, exon 1 of 2)	245.0	NM_011446	20680.0	Mm.42162	NM_011446	ENSMUSG00000063060	Sox7	-	SRY (sex determining region Y)-box 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98962915-2	chr11	98962415	98963415	+	855.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001176528, intron 1 of 7)	intron (NM_001176528, intron 1 of 7)	-1957.0	NM_001361954	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80584227-4	chr7	80583721	80584721	+	855.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49102.0	NM_001042527	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	0.0	8.5	20.5	3.0	3.0	2.5
Merged-chr2-140159507-2	chr2	140159007	140160007	+	855.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081090, intron 5 of 13)	intron (NM_001081090, intron 5 of 13)	11051.0	NM_001081090	66580.0	Mm.21228	NM_001081090	ENSMUSG00000045624	Esf1	2610101J03Rik|ABTAP|AW545818|C79684	ESF1 nucleolar pre-rRNA processing protein homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161058692-4	chr1	161058188	161059188	+	855.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172644, intron 7 of 16)	intron (NM_172644, intron 7 of 16)	11972.0	NM_172644	226539.0	Mm.28125	NM_172644	ENSMUSG00000026709	Dars2	5830468K18Rik|aspRS	aspartyl-tRNA synthetase 2 (mitochondrial)	protein-coding	11.5	21.0	15.5	15.5	14.0	20.5
Merged-chr15-89231169-3	chr15	89230674	89231674	+	855.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026813, intron 1 of 24)	MLTR11B|LTR|ERVK	19615.0	NM_027805	71474.0	Mm.184055	NM_026813	ENSMUSG00000036561	Ppp6r2	1110033O10Rik|8430411H09Rik|B230107H12Rik|Pp6r2|Saps2	protein phosphatase 6, regulatory subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113639886-6	chr6	113639460	113640460	+	855.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 1 of 11)	B1_Mus1|SINE|Alu	1493.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89349265-3	chr3	89348788	89349788	+	855.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029974)	TTS (NM_029974)	740.0	NM_001037722	11490.0	Mm.274049	NM_009614	ENSMUSG00000028041	Adam15	AD56|MDC15	a disintegrin and metallopeptidase domain 15 (metargidin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-96866561-3	chr5	96866078	96867078	+	855.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-54694.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	16.5	12.5	19.5	27.5	28.0	28.0
Merged-chr7-104167376-4	chr7	104166839	104167839	+	855.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2523.0	NM_172905	244180.0	Mm.17149	NM_172905	ENSMUSG00000044265	Olfm5	E030002O03Rik	olfactomedin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90262754-4	chr9	90262233	90263233	+	855.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	L1MA4|LINE|L1	8036.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104581762-3	chr9	104581256	104582256	+	855.783325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	12273.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	5.5	3.0	2.0	0.0	5.5	3.0
Merged-chr2-180966225-3	chr2	180965725	180966725	+	855.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177708)	promoter-TSS (NM_001177708)	-1000.0	NM_145760	228998.0	Mm.33765	NM_145760	ENSMUSG00000027575	Arfgap1	AI115377|Arf1gap	ADP-ribosylation factor GTPase activating protein 1	protein-coding	25.5	58.5	35.0	20.0	42.0	46.0
Merged-chr15-6435938-3	chr15	6435428	6436428	+	855.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 11 of 13)	intron (NM_001008702, intron 11 of 13)	-9405.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-57356452-3	chr19	57356021	57357021	+	855.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040316, intron 1 of 2)	B3|SINE|B2	4378.0	NR_040316	320879.0	Mm.375089	NR_040316	ENSMUSG00000097785	B230217O12Rik	-	RIKEN cDNA B230217O12 gene	ncRNA	0.0	21.0	2.0	4.5	4.5	1.0
Merged-chr8-90954953-4	chr8	90954478	90955478	+	855.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 3 of 39)	intron (NM_177224, intron 3 of 39)	22729.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	14.0	46.5	21.0	14.0	37.0	19.5
Merged-chr15-3340033-4	chr15	3339488	3340488	+	855.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001048178, intron 6 of 8)	intron (NM_001048178, intron 6 of 8)	-36462.0	NM_001357801	100039139.0	Mm.455610	NM_001166063	ENSMUSG00000091119	Ccdc152	-	coiled-coil domain containing 152	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-55308714-4	chr15	55308357	55309357	+	855.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181277, intron 1 of 47)	intron (NM_181277, intron 1 of 47)	1107.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34206080-4	chr17	34205573	34206573	+	855.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011530, intron 3 of 11)	B2_Mm2|SINE|B2	1594.0	NM_011530	21355.0	Mm.14814	NM_011530	ENSMUSG00000024339	Tap2	ABC18|AI462429|APT2|Abcb3|Ham-2|Ham2|MTP2|PSF2|RING11|Tap-2|Y1|jas	transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	18.5	21.5	38.5	9.5	20.5	14.0
Merged-chr10-81166946-2	chr10	81166446	81167446	+	855.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_021501, intron 1 of 10)	intron (NM_021501, intron 1 of 10)	774.0	NM_021501	59004.0	Mm.34428	NM_021501	ENSMUSG00000004934	Pias4	PIASY|Pias-gamma|Piasg	protein inhibitor of activated STAT 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-78044101-2	chr13	78043601	78044601	+	855.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163420, intron 8 of 8)	intron (NM_001163420, intron 8 of 8)	19199.0	NM_029315	75507.0	Mm.443255	NM_029315	ENSMUSG00000093668	Pou5f2	1700013G10Rik|SPRM-1|Sprm1	POU domain class 5, transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-33292929-3	chr4	33292415	33293415	+	855.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17396.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-84591534-4	chr7	84591033	84592033	+	855.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010176, intron 11 of 13)	L1ME3A|LINE|L1	14409.0	NM_010176	14085.0	Mm.3798	NM_010176	ENSMUSG00000030630	Fah	swst	fumarylacetoacetate hydrolase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-80167939-2	chr1	80167439	80168439	+	855.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	46005.0	NM_173425	241128.0	Mm.145511	NM_173425	ENSMUSG00000043230	Fam124b	A830043J08Rik	family with sequence similarity 124, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69332001-3	chr11	69331477	69332477	+	855.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010599, intron 13 of 13)	intron (NM_010599, intron 13 of 13)	5719.0	NM_010599	16499.0	Mm.232472	NM_010599	ENSMUSG00000018470	Kcnab3	C330022D06Rik|Kcnab4|mKv(beta)4	potassium voltage-gated channel, shaker-related subfamily, beta member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-14912184-3	chr3	14911691	14912691	+	855.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25903.0	NM_009801	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36070599-3	chr1	36070109	36071109	+	855.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	2209.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120739602-4	chr8	120739071	120740071	+	855.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301811, intron 1 of 8)	intron (NM_001301811, intron 1 of 8)	932.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-89940582-4	chr1	89940088	89941088	+	855.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9412.0	NM_010262	14472.0	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9665797-4	chr4	9665284	9666284	+	855.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	3378.0	NM_023066	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0.5	0.0	2.0	22.5	2.0	0.0
Merged-chr6-108468130-4	chr6	108467662	108468662	+	855.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-21581.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	3.5	7.5	14.0	3.0	5.0	8.0
Merged-chr2-31470237-2	chr2	31469737	31470737	+	855.7000119999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007494)	promoter-TSS (NM_007494)	-33.0	NM_007494	11898.0	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-14068045-5	chr14	14067610	14068610	+	855.679993	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139227, intron 4 of 11)	intron (NM_139227, intron 4 of 11)	52794.0	NM_025550	66413.0	Mm.27591	NM_025550	ENSMUSG00000021737	Psmd6	2400006A19Rik	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30418985-3	chr7	30418507	30419507	+	855.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011827, intron 1 of 3)	RMER4B|LTR|ERVK	847.0	NM_011827	23900.0	Mm.379050	NM_011827	ENSMUSG00000064109	Hcst	DAP10|KAP10	hematopoietic cell signal transducer	protein-coding	56.0	87.0	90.5	47.0	172.5	63.5
Merged-chr8-119686339-3	chr8	119685817	119686817	+	855.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023395, exon 6 of 7)	exon (NM_023395, exon 6 of 7)	-13692.0	NM_026922	69047.0	Mm.46251	NM_026922	ENSMUSG00000034112	Atp2c2	1810010G06Rik|Spca2|mKIAA0703	ATPase, Ca++ transporting, type 2C, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-117481633-3	chr7	117481126	117482126	+	855.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175645, intron 2 of 11)	intron (NM_175645, intron 2 of 11)	100647.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79843483-3	chr3	79843007	79844007	+	855.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027495)	promoter-TSS (NM_027495)	-845.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	34.5	70.0	62.5	33.0	48.0	63.0
Merged-chr11-118739667-3	chr11	118739165	118740165	+	855.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024931, intron 2 of 14)	MLT1I|LTR|ERVL-MaLR	21376.0	NM_001285438	52897.0	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8767707-4	chr3	8767235	8768235	+	855.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-100697.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75833928-3	chr10	75833372	75834372	+	855.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010361, intron 1 of 4)	intron (NM_010361, intron 1 of 4)	1009.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76506984-3	chr11	76506482	76507482	+	855.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198018, intron 1 of 21)	intron (NM_198018, intron 1 of 21)	2437.0	NM_198018	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.0	0.5	3.5	0.0	0.0	6.5
Merged-chr4-141678287-2	chr4	141677810	141678810	+	855.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7406.0	NM_023544	69994.0	Mm.441022	NM_023544	ENSMUSG00000040715	Rsc1a1	1700027M01Rik|Rs1	regulatory solute carrier protein, family 1, member 1	protein-coding	12.5	4.5	8.5	0.5	1.0	5.5
Merged-chr15-59646396-3	chr15	59645897	59646897	+	855.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2257.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54939553-3	chr14	54939055	54940055	+	855.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026066)	TTS (NM_026066)	3058.0	NM_029390	67272.0	Mm.41614	NM_026066	ENSMUSG00000040759	Cmtm5	1500005P16Rik|2900052H21Rik|Cklfsf5	CKLF-like MARVEL transmembrane domain containing 5	protein-coding	6.5	1.0	0.5	3.5	0.0	0.0
Merged-chr11-76699846-3	chr11	76699357	76700357	+	855.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19984.0	NM_177709	237858.0	Mm.127006	NM_177709	ENSMUSG00000046275	Tusc5	C130069F04Rik|DSPB1|Lost1	tumor suppressor candidate 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-91703210-3	chr15	91702715	91703715	+	855.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025730, intron 11 of 50)	intron (NM_025730, intron 11 of 50)	29991.0	NM_025730	66725.0	Mm.37558	NM_025730	ENSMUSG00000036273	Lrrk2	4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46	leucine-rich repeat kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-81756841-2	chr8	81756351	81757351	+	855.666626	f0_c57.idr|f1_c57bl6.idr	intron (NM_001297593, intron 4 of 23)	intron (NM_001297593, intron 4 of 23)	414289.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	4.5	5.0	0.0	6.0	0.0	0.0
Merged-chr15-78323940-2	chr15	78323437	78324437	+	855.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1863.0	NM_001358854	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	0.0	1.0	0.0	0.0	6.0	1.0
Merged-chr12-20231592-2	chr12	20231092	20232092	+	855.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	584187.0	NR_015521	69513.0	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75610839-2	chr18	75610380	75611380	+	855.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 4 of 11)	intron (NM_201354, intron 4 of 11)	86816.0	NM_201354	269037.0	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	0.0	11.5	7.5	2.0	0.0	1.5
Merged-chr3-87909648-4	chr3	87909158	87910158	+	855.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331051, intron 1 of 6)	intron (NM_001331051, intron 1 of 6)	2808.0	NM_001331052	15191.0	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	3.5	10.5	7.0	11.5	25.0	6.0
Merged-chr19-55254680-4	chr19	55254173	55255173	+	855.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027976, intron 1 of 21)	intron (NM_027976, intron 1 of 21)	1304.0	NM_027976	433256.0	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60603472-4	chr13	60602967	60603967	+	855.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	1256.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45144150-3	chr13	45143673	45144673	+	855.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-142077.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	3.5	6.5	3.5	3.5	0.0	6.5
Merged-chr2-73066604-3	chr2	73066084	73067084	+	855.603149	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86138.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55299556-4	chr19	55299055	55300055	+	855.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360595, intron 9 of 9)	intron (NM_001360595, intron 9 of 9)	16481.0	NM_001360595	66980.0	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6	zinc finger, DHHC domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-44908235-4	chr12	44907722	44908722	+	855.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144552, intron 2 of 5)	intron (NM_144552, intron 2 of 5)	166261.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	0.0	2.0	2.0	1.5	0.0	0.0
Merged-chr2-102736769-3	chr2	102736269	102737269	+	855.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077514, intron 2 of 10)	intron (NM_001077514, intron 2 of 10)	9991.0	NR_153852	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19619418-7	chr7	19618938	19619938	+	855.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290457, intron 3 of 10)	intron (NM_001290457, intron 3 of 10)	10000.0	NM_001290457	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-19161040-3	chr8	19160556	19161556	+	855.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3169.0	NM_153115	78128.0	Mm.229357	NM_153115	ENSMUSG00000079842	Spag11a	9230111C08Rik|Bin1b|EP2Q|EP2e|Spag11	sperm associated antigen 11A	protein-coding	4.0	8.0	5.0	3.5	6.5	4.5
Merged-chr2-166516439-4	chr2	166515967	166516967	+	855.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-48055.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45200786-3	chr2	45200284	45201284	+	855.511108	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83342.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-69368321-2	chr9	69367821	69368821	+	855.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289916, intron 4 of 9)	intron (NM_001289916, intron 4 of 9)	-4074.0	NR_136934	102642202.0	Mm.415363	NR_136934	ENSMUSG00000086648	Gm15511	-	predicted gene 15511	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83702495-2	chr6	83701995	83702995	+	855.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_075094, exon 2 of 3)	non-coding (NR_075094, exon 2 of 3)	8330.0	NR_075094	574519.0	Mm.487605	NR_002871	ENSMUSG00000085794	Vax2os	Vas2os|Vax2os1|Vax2os2	ventral anterior homeobox 2, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56464527-2	chr18	56464027	56465027	+	855.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	32395.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	4.0	6.5	4.0	0.5	11.5	5.5
Merged-chr19-56709068-2	chr19	56708568	56709568	+	855.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13304.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110376996-4	chr5	110376511	110377511	+	855.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142642, intron 11 of 18)	intron (NM_001142642, intron 11 of 18)	10116.0	NM_028596	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	0.0	0.0	0.0	0.0	3.0	1.0
Merged-chr11-51910245-2	chr11	51909745	51910745	+	855.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-52615.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117895814-2	chr5	117895314	117896314	+	855.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008712, exon 4 of 28)	exon (NM_008712, exon 4 of 28)	28975.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-69122815-2	chr2	69122315	69123315	+	855.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12985.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32176103-3	chr19	32175584	32176584	+	855.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	MLT1C|LTR|ERVL-MaLR	34929.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59397456-2	chr15	59396956	59397956	+	855.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 2 of 4)	ORR1D2|LTR|ERVL-MaLR	23258.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6258256-2	chr19	6257756	6258756	+	855.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_194348, exon 34 of 40)	exon (NM_194348, exon 34 of 40)	-6387.0	NR_029830	723957.0		NR_029830	ENSMUSG00000065582	Mir194-2	Mirn194-2|mir-194-2	microRNA 194-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-20259453-2	chr5	20258953	20259953	+	855.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 6 of 22)	B4|SINE|B4	351935.0	NM_015823	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-71821362-4	chr12	71820826	71821826	+	855.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9742.0	NM_026102	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139464569-2	chr5	139464069	139465069	+	855.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4035.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118850833-2	chr9	118850286	118851286	+	855.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133721, exon 23 of 28)	exon (NM_133721, exon 23 of 28)	-75750.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	10.0	29.0	6.0	3.0	24.0	12.5
Merged-chr9-44380570-2	chr9	44380070	44381070	+	855.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_021395, exon 2 of 26)	exon (NM_021395, exon 2 of 26)	1080.0	NM_021395	12282.0	Mm.116721	NM_021395	ENSMUSG00000032115	Hyou1	AI415631|CBP-140|Cab140|Grp170|Orp150	hypoxia up-regulated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88523630-4	chr15	88523130	88524130	+	855.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76672.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-81555189-2	chr1	81554689	81555689	+	855.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	477782.0	NM_001356397	241134.0	Mm.313904	NM_172849	ENSMUSG00000054976	Nyap2	9430031J16Rik|Jr6|Kiaa1486	neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22782914-3	chr11	22782411	22783411	+	855.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76824.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-59220187-3	chr3	59219689	59220689	+	855.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357007, intron 1 of 2)	intron (NM_001357007, intron 1 of 2)	-9307.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	5.0	0.5	3.0	0.0	0.0	4.0
Merged-chr2-129305519-2	chr2	129305004	129306004	+	855.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040371, intron 3 of 4)	intron (NR_040371, intron 3 of 4)	4468.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	57.0	183.0	90.5	60.0	76.0	50.5
Merged-chr12-34387994-2	chr12	34387494	34388494	+	855.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 13 of 27)	URR1B|DNA|hAT-Charlie	140895.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136582782-3	chr1	136582285	136583285	+	855.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-42116.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12591120-4	chr19	12590631	12591631	+	855.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015503, intron 1 of 1)	intron (NR_015503, intron 1 of 1)	5435.0	NR_015503	74333.0	Mm.329744	NR_015503	ENSMUSG00000086213	A330040F15Rik	-	RIKEN cDNA A330040F15 gene	ncRNA	0.0	0.0	1.0	0.5	0.0	3.0
Merged-chr5-12030290-2	chr5	12029790	12030790	+	855.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112247.0	NM_001177510	545732.0	Mm.389066	NM_001177510	ENSMUSG00000067848	4933402N22Rik	-	RIKEN cDNA 4933402N22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-63130719-4	chr11	63130195	63131195	+	855.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008885)	promoter-TSS (NM_008885)	-762.0	NM_008885	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63215962-3	chr4	63215445	63216445	+	855.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025685, intron 1 of 60)	CpG-9975	533.0	NM_025685	373864.0	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	0.0	4.5	0.0	0.0	0.0	1.5
Merged-chr17-34652783-2	chr17	34652283	34653283	+	855.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_017406, exon 12 of 18)	exon (NM_017406, exon 12 of 18)	5637.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	0.5	1.0	1.0	0.0	1.0	0.0
Merged-chr1-165645375-2	chr1	165644875	165645875	+	855.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10834.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61583927-2	chr8	61583427	61584427	+	855.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	7242.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	1.5	0.0	0.0	0.0	0.0	0.0
Merged-chr1-183553375-3	chr1	183552877	183553877	+	855.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134129.0	NM_001308052	78772.0	Mm.29003	NM_030175	ENSMUSG00000053461	Hhipl2	4930507C10Rik|AW208802|Hhip3	hedgehog interacting protein-like 2	protein-coding	0.0	1.5	2.0	3.0	0.0	3.0
Merged-chr14-27380969-3	chr14	27380438	27381438	+	855.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 4 of 10)	L1ME4b|LINE|L1	19549.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	31.5	40.5	43.0	25.5	23.0	37.5
Merged-chr4-72287575-2	chr4	72287075	72288075	+	855.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F|LINE|L1	86331.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-183982401-2	chr1	183981901	183982901	+	855.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51597.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89258878-3	chr6	89258381	89259381	+	855.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26844.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-154016991-2	chr1	154016491	154017491	+	855.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117062.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32197271-2	chr5	32196771	32197771	+	855.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER94|DNA|hAT-Blackjack	-35437.0	NM_030072	665270.0	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	4.5	18.0	3.0	0.5	6.5	1.5
Merged-chr7-36696671-3	chr7	36696265	36697265	+	855.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1353.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	14.0	27.0	15.0	0.0	0.0	1.0
Merged-chr17-74458500-2	chr17	74458000	74459000	+	855.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 1 of 8)	intron (NM_001033367, intron 1 of 8)	608.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-186712849-2	chr1	186712349	186713349	+	855.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6860.0	NM_001329107	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-100419366-4	chr3	100418873	100419873	+	855.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7032.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72429877-2	chr8	72429365	72430365	+	855.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028500, intron 5 of 8)	intron (NM_028500, intron 5 of 8)	5291.0	NM_029782	73316.0	Mm.196315	NM_028500	ENSMUSG00000019732	Calr3	1700031L01Rik|6330586I20Rik|Crt2|cspn	calreticulin 3	protein-coding	4.5	12.5	11.5	12.0	6.0	4.5
Merged-chr6-38874131-4	chr6	38873618	38874618	+	855.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 1 of 14)	intron (NM_010433, intron 1 of 14)	2072.0	NM_010433	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45812421-2	chr7	45811921	45812921	+	855.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011181, intron 3 of 11)	intron (NM_011181, intron 3 of 11)	1895.0	NM_011181	19158.0	Mm.272130	NM_011181	ENSMUSG00000003269	Cyth2	ARNO|CLM2|Pscd2	cytohesin 2	protein-coding	0.0	0.0	1.5	7.0	0.0	0.0
Merged-chr18-69667429-4	chr18	69666922	69667922	+	855.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 15 of 19)	intron (NM_001361128, intron 15 of 19)	-258137.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-83715186-4	chr13	83714649	83715649	+	855.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6232.0	NR_152244	320203.0	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik|ECONEXIN|EyeLinc1|Visc-1	RIKEN cDNA C130071C03 gene	ncRNA	4.5	0.0	6.0	0.0	0.0	6.5
Merged-chr11-94486208-4	chr11	94485716	94486716	+	855.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144827)	promoter-TSS (NM_144827)	-906.0	NM_144827	217116.0	Mm.156123	NM_144827	ENSMUSG00000020867	Spata20	Tisp78	spermatogenesis associated 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-72837954-3	chr15	72837458	72838458	+	855.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164641, intron 17 of 17)	intron (NM_001164641, intron 17 of 17)	-27634.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	47.0	92.0	50.0	43.5	78.5	41.5
Merged-chr11-53774261-4	chr11	53773772	53774772	+	855.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159393, intron 6 of 9)	intron (NM_001159393, intron 6 of 9)	3799.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34479280-6	chr1	34478730	34479730	+	855.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19182.0	NM_009355	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140610502-3	chr5	140609978	140610978	+	855.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008494, intron 1 of 7)	intron (NM_008494, intron 1 of 7)	3137.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96161651-2	chr3	96161151	96162151	+	855.400024	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181409)	promoter-TSS (NM_181409)	-319.0	NM_181409	194126.0	Mm.268536	NM_181409	ENSMUSG00000045934	Mtmr11	AI035306|BC051083|Cra	myotubularin related protein 11	protein-coding	0.0	4.5	4.5	0.0	5.5	4.5
Merged-chr1-60662667-5	chr1	60662143	60663143	+	855.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83745.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	20.0	10.5	21.0	27.5	38.0	43.0
Merged-chr8-111061793-4	chr8	111061266	111062266	+	855.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5427.0	NM_028274	72544.0	Mm.24174	NM_028274	ENSMUSG00000109941	Exosc6	2610510N21Rik|C76919|Mtr3	exosome component 6	protein-coding	6.5	0.5	3.0	3.0	0.5	0.5
Merged-chr6-73010216-4	chr6	73009696	73010696	+	855.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51448.0	NM_001190327	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	5.0	0.0	1.5	5.5	0.0	6.5
Merged-chr13-21732176-2	chr13	21731676	21732676	+	855.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2858.0	NM_178210	319159.0		NM_178210	ENSMUSG00000067455	Hist1h4j	-	histone cluster 1, H4j	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-28814588-2	chr3	28814088	28815088	+	855.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9080.0	NM_026517	68028.0	Mm.21724	NM_026517	ENSMUSG00000039221	Rpl22l1	3110001N18Rik|AU041196	ribosomal protein L22 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32983492-2	chr2	32982992	32983992	+	855.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-1409.0	NR_151460	56017.0	Mm.305754	NM_019488	ENSMUSG00000026791	Slc2a8	D2Ertd44e|GLUT8|GlutX1	solute carrier family 2, (facilitated glucose transporter), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-96791999-3	chr5	96791523	96792523	+	855.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1362.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	7.5	7.0	6.0	4.5	12.5	10.0
Merged-chr3-153797763-1	chr3	153797263	153798263	+	855.3333130000001	f0_balb.idr	Intergenic	Intergenic	-5676.0	NR_045801	70594.0	Mm.491050	NR_045801	ENSMUSG00000062046	5730460C07Rik	-	RIKEN cDNA 5730460C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70693391-1	chr8	70692891	70693891	+	855.3333130000001	f1_balb.idr	Intergenic	PB1D7|SINE|Alu	-4348.0	NM_010592	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	6.5	6.0	6.0	0.0	5.0	5.5
Merged-chr10-80881472-3	chr10	80880979	80881979	+	855.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081688, intron 1 of 17)	B3|SINE|B2	1663.0	NM_001081688	432478.0	Mm.235302	NM_001081688	ENSMUSG00000059406	Tmprss9	Serase-1B	transmembrane protease, serine 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134486103-3	chr5	134485605	134486605	+	855.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29389.0	NM_001081464	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75316564-2	chr10	75316064	75317064	+	855.3333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009630)	promoter-TSS (NM_009630)	-313.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29045207-3	chr17	29044722	29045722	+	855.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12562.0	NR_036613	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144730553-3	chr2	144730052	144731052	+	855.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025314, intron 4 of 5)	intron (NM_025314, intron 4 of 5)	-93114.0	NM_025490	66328.0	Mm.45377	NM_025490	ENSMUSG00000027431	Scp2d1	1700010M22Rik	SCP2 sterol-binding domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75687587-3	chr2	75687102	75688102	+	855.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010902, intron 1 of 4)	intron (NM_010902, intron 1 of 4)	17061.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-52174793-4	chr9	52174291	52175291	+	855.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6680.0	NM_001162921	244871.0	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	0.0	1.5	1.0	0.0	5.0	0.0
Merged-chr15-97519392-3	chr15	97518908	97519908	+	855.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD|LINE|L1	186414.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17127467-3	chr16	17126958	17127958	+	855.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2256.0	NM_001358255	70458.0	Mm.234165	NM_183287	ENSMUSG00000049916	2610318N02Rik	AL033325	RIKEN cDNA 2610318N02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107259842-1	chr9	107259342	107260342	+	855.3333130000001	f0_balb.idr	intron (NM_001316691, intron 5 of 7)	intron (NM_001316691, intron 5 of 7)	-27933.0	NM_153413	208869.0	Mm.150259	NM_153413	ENSMUSG00000039716	Dock3	MOCA|PBP|mKIAA0299	dedicator of cyto-kinesis 3	protein-coding	1.0	0.0	0.5	0.5	2.0	0.0
Merged-chr9-37146965-3	chr9	37146436	37147436	+	855.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 1 of 12)	(CCTCG)n|Simple_repeat|Simple_repeat	386.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4188187-3	chr11	4187702	4188702	+	855.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	1369.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32582285-3	chr9	32581792	32582792	+	855.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40840.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153060309-4	chr2	153059801	153060801	+	855.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5654.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	0.0	5.0	7.0	0.5	0.0	1.5
Merged-chr11-69390586-4	chr11	69390066	69391066	+	855.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4780.0	NM_001045525	327951.0	Mm.415669	NM_001045525	ENSMUSG00000044795	Cyb5d1	Gm740	cytochrome b5 domain containing 1	protein-coding	6.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124353761-5	chr5	124353313	124354313	+	855.2899779999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013812, intron 1 of 3)	CpG	815.0	NM_013812	13445.0	Mm.391838	NM_013812	ENSMUSG00000029394	Cdk2ap1	Apc10|Cdkap1|DORC1|Doc1|ST19|doc-1|p12	CDK2 (cyclin-dependent kinase 2)-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-46547768-3	chr7	46547257	46548257	+	855.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013789, intron 9 of 10)	Tigger14a|DNA|TcMar-Tigger	92050.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-12275386-4	chr4	12274845	12275845	+	855.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-103330.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46269136-4	chr11	46268613	46269613	+	855.270874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252459, intron 11 of 30)	intron (NM_001252459, intron 11 of 30)	33556.0	NM_177075	320116.0	Mm.39600	NM_177075	ENSMUSG00000048721	Fndc9	C030019I05Rik	fibronectin type III domain containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20561451-3	chr11	20560941	20561941	+	855.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021372, intron 1 of 1)	intron (NM_021372, intron 1 of 1)	18188.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	8.0	0.5	3.5	8.0	0.5	3.5
Merged-chr15-99965316-2	chr15	99964816	99965816	+	855.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1-int|LTR|ERVL-MaLR	-4749.0	NM_001080948	207214.0	Mm.28811	NM_001024526	ENSMUSG00000023025	Larp4	DXErtd793|DXErtd793e	La ribonucleoprotein domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94371634-4	chr16	94371091	94372091	+	855.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019543)	promoter-TSS (NM_019543)	-576.0	NM_001159617	56176.0	Mm.474449	NM_019543	ENSMUSG00000022940	Pigp	Dcrc|Dscr5	phosphatidylinositol glycan anchor biosynthesis, class P	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-94692563-2	chr9	94692062	94693062	+	855.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 2 of 15)	intron (NM_177909, intron 2 of 15)	22670.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	138.0	264.0	231.5	102.5	220.0	179.5
Merged-chr4-138922199-4	chr4	138921640	138922640	+	855.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8193.0	NM_028453	73162.0	Mm.238081	NM_028453	ENSMUSG00000041161	Otud3	3110030K17Rik	OTU domain containing 3	protein-coding	5.0	8.0	0.5	8.5	9.5	0.0
Merged-chr3-51234626-4	chr3	51234114	51235114	+	855.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009834, intron 1 of 2)	intron (NM_009834, intron 1 of 2)	10167.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45019103-6	chr7	45018603	45019603	+	855.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360132)	promoter-TSS (NM_001360132)	-367.0	NM_001360132	20130.0	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62846041-4	chr11	62845554	62846554	+	855.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1069.0	NM_001033669	213980.0	Mm.482259	NM_001033669	ENSMUSG00000090173	Fbxw10	Fbw10|HREP|SM25H2|SM2SH2	F-box and WD-40 domain protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70776098-2	chr9	70775598	70776598	+	855.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007399, intron 14 of 15)	intron (NM_007399, intron 14 of 15)	97116.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103735085-4	chr3	103734484	103735484	+	855.238098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133859)	TTS (NM_133859)	3017.0	NM_133859	99543.0	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	4.0	5.0	16.5	3.0	5.0	16.5
Merged-chr17-8883299-3	chr17	8882805	8883805	+	855.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347321, intron 1 of 21)	intron (NM_001347321, intron 1 of 21)	33320.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-133079065-4	chr7	133078521	133079521	+	855.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	2839.0	NM_001347623	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120667237-4	chr4	120666733	120667733	+	855.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019563, exon 1 of 1)	exon (NM_019563, exon 1 of 1)	670.0	NM_019563	56222.0	Mm.272646	NM_019563	ENSMUSG00000070803	Cited4	MRG-2|Mrg2	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131287480-4	chr1	131286983	131287983	+	855.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081011, exon 23 of 23)	3' UTR (NM_001081011, exon 23 of 23)	-7920.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21425944-3	chr10	21425446	21426446	+	855.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48646.0	NM_178713	237320.0	Mm.90181	NM_178713	ENSMUSG00000037542	Aldh8a1	Raldh4	aldehyde dehydrogenase 8 family, member A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-58118999-3	chr19	58118506	58119506	+	855.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181415, intron 28 of 28)	intron (NM_181415, intron 28 of 28)	67839.0	NR_049196	100885835.0		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	0.0	10.5	3.0	3.5	6.0	3.5
Merged-chr17-71186866-3	chr17	71186368	71187368	+	855.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	PB1D7|SINE|Alu	2890.0	NM_022882	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	4.5	20.5	9.0	6.5	6.5	6.5
Merged-chr7-126756338-2	chr7	126755838	126756838	+	855.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3288.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87425898-2	chr11	87425398	87426398	+	855.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_031386, intron 1 of 30)	B1_Mus1|SINE|Alu	-1693.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.0	10.0	16.0	16.5	13.0	12.5
Merged-chr10-80170695-2	chr10	80170195	80171195	+	855.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_007705, exon 6 of 7)	exon (NM_007705, exon 6 of 7)	-2249.0	NM_027207	69770.0	Mm.302754	NM_027207	ENSMUSG00000035595	1600002K03Rik	-	RIKEN cDNA 1600002K03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5986608-4	chr18	5986106	5987106	+	855.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	149492.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	6.5	1.0	9.5	1.5	5.5	8.0
Merged-chr9-113745585-4	chr9	113745080	113746080	+	855.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114347, intron 1 of 39)	intron (NM_001114347, intron 1 of 39)	4107.0	NM_001114347	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-121442646-4	chr2	121442251	121443251	+	855.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145973)	promoter-TSS (NM_145973)	-150.0	NM_145973	269344.0	Mm.330522	NM_145973	ENSMUSG00000027246	Ell3	A930015D22Rik	elongation factor RNA polymerase II-like 3	protein-coding	18.5	8.5	5.0	1.5	3.0	2.0
Merged-chr7-29306804-3	chr7	29306326	29307326	+	855.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013874, intron 1 of 11)	intron (NM_013874, intron 1 of 11)	2821.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	3.0	7.5	0.0	3.0	7.5	0.0
Merged-chr7-90035252-3	chr7	90034752	90035752	+	855.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 1 of 5)	intron (NR_110365, intron 1 of 5)	6093.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	32.0	78.0	39.5	21.5	34.0	32.5
Merged-chr11-83639235-3	chr11	83638773	83639773	+	855.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10105.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100635405-3	chr15	100634898	100635898	+	855.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001285414, exon 1 of 3)	5' UTR (NM_001285414, exon 1 of 3)	161.0	NM_001285414	207818.0	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-81064435-4	chr17	81063985	81064985	+	855.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028138, intron 1 of 9)	intron (NM_028138, intron 1 of 9)	600.0	NM_028138	72167.0	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54591365-2	chr13	54590865	54591865	+	855.083374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025933)	TTS (NM_025933)	1134.0	NM_025933	67044.0	Mm.29353	NM_025933	ENSMUSG00000025868	Higd2a	2010110M21Rik|AA690237	HIG1 domain family, member 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71221628-4	chr17	71221136	71222136	+	855.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357791, intron 2 of 19)	intron (NM_001357791, intron 2 of 19)	16982.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	6.0	11.5	7.0	11.5	15.0	8.0
Merged-chr7-90150516-4	chr7	90150023	90151023	+	855.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	20310.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-183657297-4	chr1	183656778	183657778	+	855.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91699.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	15.5	16.0	16.0	5.0	8.0	11.0
Merged-chr16-21644048-5	chr16	21643565	21644565	+	855.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 46 of 46)	intron (NM_001081366, intron 46 of 46)	50600.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134928967-5	chr4	134928450	134929450	+	855.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-2030.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-60887112-4	chr8	60886663	60887663	+	855.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-3230.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	2.0	2.0	1.0	0.0	0.0	1.0
Merged-chr11-37186308-3	chr11	37185812	37186812	+	855.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-242071.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr7-34305600-3	chr7	34305118	34306118	+	855.044434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20009.0	NM_172741	233103.0	Mm.491097	NM_172741	ENSMUSG00000066571	4931406P16Rik	AA553327|mKIAA0355	RIKEN cDNA 4931406P16 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54203862-4	chr12	54203368	54204368	+	855.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028133)	promoter-TSS (NM_028133)	6.0	NM_028133	112407.0	Mm.133037	NM_028133	ENSMUSG00000035105	Egln3	2610021G09Rik|AI505553|AI648162|Hif-p4h-3|Phd3|SM-20	egl-9 family hypoxia-inducible factor 3	protein-coding	2.5	2.5	0.0	4.0	4.0	4.0
Merged-chr7-113518628-4	chr7	113518124	113519124	+	855.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360668, intron 1 of 12)	MIR3|SINE|MIR	4790.0	NM_001360669	67420.0	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100157858-2	chr7	100157358	100158358	+	855.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1419.0	NM_026010	67164.0	Mm.46777	NM_026010	ENSMUSG00000030725	Lipt2	2610209A20Rik	lipoyl(octanoyl) transferase 2 (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr8-120694354-2	chr8	120693854	120694854	+	855.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26034.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88176766-2	chr3	88176266	88177266	+	855.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045997, intron 1 of 2)	B3A|SINE|B2	1019.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98359293-2	chr7	98358793	98359793	+	855.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168541, intron 2 of 3)	intron (NM_001168541, intron 2 of 3)	1995.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	6.5	17.5	12.0	9.5	10.0	13.5
Merged-chr3-152556642-3	chr3	152556143	152557143	+	855.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355635, intron 6 of 8)	intron (NM_001355635, intron 6 of 8)	-110270.0	NR_040386	99542.0	Mm.394921	NR_040386	ENSMUSG00000097745	AI115009	-	expressed sequence AI115009	ncRNA	1.5	0.0	0.0	0.0	0.5	3.5
Merged-chr1-91454675-2	chr1	91454175	91455175	+	855.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011066, intron 1 of 22)	intron (NM_011066, intron 1 of 22)	4653.0	NM_011066	18627.0	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	2.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25422029-4	chr2	25421503	25422503	+	855.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1239.0	NM_001289453	14347.0	Mm.1203	NM_013524	ENSMUSG00000036587	Fut7	AI853193|FTVII|Fuc-TVII|FucT-VII	fucosyltransferase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64317711-2	chr7	64317211	64318211	+	855.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172742, intron 7 of 15)	MTC|LTR|ERVL-MaLR	30041.0	NM_172742	233315.0	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31190427-2	chr14	31189927	31190927	+	855.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347583, intron 6 of 13)	intron (NM_001347583, intron 6 of 13)	16399.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-74390442-1	chr13	74389942	74390942	+	855.0	f0_balb.idr	Intergenic	Intergenic	-13876.0	NM_001081680	238722.0	Mm.461254	NM_001081680	ENSMUSG00000069184	Zfp72	Zfp74	zinc finger protein 72	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45015728-3	chr19	45015260	45016260	+	855.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145503, intron 1 of 4)	CpG	550.0	NM_001130525	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-55517394-2	chr3	55516894	55517894	+	855.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357475, intron 16 of 16)	intron (NM_001357475, intron 16 of 16)	55666.0	NM_001357476	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr6-137690913-3	chr6	137690401	137691401	+	855.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR40c|LTR|ERVL	-41616.0	NM_007945	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-47370431-3	chr18	47369939	47370939	+	855.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1569.0	NM_001311097	20358.0	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135603110-2	chr7	135602610	135603610	+	855.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316680, intron 2 of 20)	intron (NM_001316680, intron 2 of 20)	-2718.0	NM_001316679	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103155900-1	chr14	103155400	103156400	+	855.0	f0_balb.idr	exon (NM_207215, exon 58 of 85)	exon (NM_207215, exon 58 of 85)	-56334.0	NM_001360342	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46781290-3	chr8	46780794	46781794	+	855.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	41549.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27037828-2	chr17	27037346	27038346	+	855.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8587.0	NM_027544	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	48.5	117.0	68.5	1.5	7.0	3.0
Merged-chr2-150834785-2	chr2	150834285	150835285	+	855.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 11 of 12)	intron (NR_151505, intron 11 of 12)	7785.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-33855777-1	chr8	33855277	33856277	+	855.0	f0_balb.idr	intron (NM_001042675, intron 4 of 6)	L1MB4|LINE|L1	74086.0	NM_019733	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	2.5	2.0	7.5	4.0	11.5	0.5
Merged-chr10-39490434-1	chr10	39489934	39490934	+	855.0	f0_balb.idr	intron (NM_001122893, intron 3 of 13)	intron (NM_001122893, intron 3 of 13)	120635.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69048338-2	chr11	69047838	69048838	+	855.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011496, exon 4 of 8)	exon (NM_011496, exon 4 of 8)	2701.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	0.0	2.5	0.0	0.0	0.0	0.0
Merged-chr9-62555391-2	chr9	62554891	62555891	+	855.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18347.0	NM_175484	235431.0	Mm.335229	NM_175484	ENSMUSG00000041729	Coro2b	CLIPINC|E130012P22Rik	coronin, actin binding protein, 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56185122-2	chr17	56184622	56185622	+	855.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1202.0	NM_080837	28106.0	Mm.294870	NM_080837	ENSMUSG00000019579	Mydgf	D17Wsu104e|Il25|Ly6elg	myeloid derived growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27026118-3	chr17	27025593	27026593	+	855.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149749, intron 1 of 6)	intron (NR_149749, intron 1 of 6)	2534.0	NM_007523	12018.0	Mm.2443	NM_007523	ENSMUSG00000057789	Bak1	Bak|N-BAK1|N-Bak	BCL2-antagonist/killer 1	protein-coding	23.0	85.5	46.0	34.5	112.0	83.0
Merged-chr6-72096959-1	chr6	72096459	72097459	+	855.0	f0_balb.idr	promoter-TSS (NM_011375)	promoter-TSS (NM_011375)	-649.0	NM_001035228	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9844404-2	chr4	9843904	9844904	+	855.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013526)	promoter-TSS (NM_013526)	32.0	NM_013526	242316.0	Mm.302555	NM_013526	ENSMUSG00000051279	Gdf6	BMP-13|BMP13|GDF16	growth differentiation factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-10726973-3	chr18	10726472	10727472	+	855.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144860, intron 1 of 20)	intron (NM_144860, intron 1 of 20)	1347.0	NM_144860	225164.0	Mm.21500	NM_144860	ENSMUSG00000024294	Mib1	DIP-1|E430019M12Rik|Mib|mKIAA1323	mindbomb E3 ubiquitin protein ligase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137942015-1	chr4	137941515	137942515	+	855.0	f1_balb.idr	intron (NM_199307, intron 9 of 19)	Lx8|LINE|L1	-51441.0	NM_001256198	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	8.0	0.0	7.5	0.0	4.5	2.0
Merged-chr10-111171363-3	chr10	111170841	111171841	+	855.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003717, intron 1 of 22)	intron (NM_001003717, intron 1 of 22)	6539.0	NM_175489	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9117218-2	chr4	9116718	9117718	+	855.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	-152075.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142781210-2	chr5	142780710	142781710	+	855.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178242, intron 4 of 15)	intron (NM_178242, intron 4 of 15)	36177.0	NM_178242	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91075063-2	chr2	91074563	91075563	+	855.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4748.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	3.5	0.0	0.0	0.0	0.0	0.5
Merged-chr8-107559802-1	chr8	107559302	107560302	+	855.0	f1_balb.idr	Intergenic	B3|SINE|B2	8558.0	NR_029553	387158.0		NR_029553	ENSMUSG00000065439	Mir140	Mirn140|mir-140|mmu-mir-140	microRNA 140	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47339246-2	chr19	47338746	47339746	+	855.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 6 of 14)	L2a|LINE|L2	-65657.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171686695-4	chr1	171686190	171687190	+	855.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007649, intron 1 of 3)	intron (NM_007649, intron 1 of 3)	4698.0	NM_001360767	12506.0	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	37.0	41.5	28.0	13.0	36.0	23.0
Merged-chr8-75152076-2	chr8	75151576	75152576	+	855.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42567.0	NM_008566	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24709867-2	chr16	24709367	24710367	+	855.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 7 of 12)	(TTTG)n|Simple_repeat|Simple_repeat	-11988.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129490645-2	chr2	129490137	129491137	+	855.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177653, intron 1 of 6)	RLTR42-int|LTR|ERVK	45965.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	176.5	413.0	260.5	236.0	398.5	279.0
Merged-chr5-16045575-3	chr5	16045076	16046076	+	855.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110843, intron 3 of 38)	intron (NM_001110843, intron 3 of 38)	110885.0	NM_001110844	12293.0	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-15976110-4	chr7	15975613	15976613	+	855.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081418, intron 10 of 13)	intron (NM_001081418, intron 10 of 13)	-8578.0	NM_153068	259300.0	Mm.138215	NM_153068	ENSMUSG00000074364	Ehd2	BC027084|C130052H20Rik	EH-domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-106848122-2	chr4	106847578	106848578	+	855.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43071.0	NM_001347159	329910.0	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-98955355-3	chr9	98954865	98955865	+	855.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012020)	promoter-TSS (NM_012020)	-55.0	NR_003248	768252.0	Mm.129645	NR_003248	ENSMUSG00000097072	Foxl2os	-	forkhead box L2, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79173866-2	chr12	79173366	79174366	+	855.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001362269)	TTS (NM_001362269)	-1408.0	NM_016800	53612.0	Mm.265929	NM_016800	ENSMUSG00000021124	Vti1b	AU015348|GES30|MVti1b|SNARE|Vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113911270-2	chr13	113910770	113911770	+	855.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	116762.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103383062-3	chr15	103382547	103383547	+	855.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16256.0	NM_001314041	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116504846-1	chr7	116504346	116505346	+	855.0	f0_balb.idr	intron (NM_001130479, intron 1 of 13)	intron (NM_001130479, intron 1 of 13)	477.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-55843239-6	chr7	55842801	55843801	+	855.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 1 of 30)	intron (NM_011370, intron 1 of 30)	1230.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43681178-4	chr7	43680677	43681677	+	854.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9146.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109136981-3	chr4	109136482	109137482	+	854.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355191, exon 1 of 21)	5' UTR (NM_001355191, exon 1 of 21)	931.0	NM_001355191	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	3.0	2.5	2.5	5.0	7.5	2.0
Merged-chr1-6204889-3	chr1	6204374	6205374	+	854.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-9788.0	NM_009826	12421.0	Mm.293811	NM_009826	ENSMUSG00000025907	Rb1cc1	2900055E04Rik|5930404L04Rik|Cc1|FIP200|LaXp180	RB1-inducible coiled-coil 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122450476-4	chr2	122449994	122450994	+	854.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356532, intron 6 of 17)	MTC|LTR|ERVL-MaLR	9674.0	NM_001356532	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	8.0	10.5	6.0	6.0	45.5	22.5
Merged-chr11-94600895-2	chr11	94600395	94601395	+	854.9166869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_153807, intron 1 of 15)	intron (NM_153807, intron 1 of 15)	891.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170446875-2	chr1	170446375	170447375	+	854.9166869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 2 of 9)	intron (NM_001109985, intron 2 of 9)	110235.0	NM_027528	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6781329-5	chr17	6780722	6781722	+	854.896667	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 1 of 12)	intron (NM_009510, intron 1 of 12)	1558.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	1.5	13.0	10.5	1.5	13.0	10.5
Merged-chr6-143221327-3	chr6	143220837	143221837	+	854.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24551.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70247640-3	chr11	70247137	70248137	+	854.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007440, intron 8 of 13)	intron (NM_007440, intron 8 of 13)	7733.0	NM_001331118	11684.0	Mm.12286	NM_007440	ENSMUSG00000000320	Alox12	9930022G08Rik|Alox12p|P-12LO	arachidonate 12-lipoxygenase	protein-coding	0.0	0.0	0.5	0.5	0.0	0.0
Merged-chr11-117116972-4	chr11	117116475	117117475	+	854.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 1 of 16)	intron (NM_001166507, intron 1 of 16)	1803.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86537840-2	chr6	86537340	86538340	+	854.875	f1_balb.idr|f1_c57bl6.idr	intron (NR_037961, intron 3 of 4)	B1_Mur3|SINE|Alu	10439.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-3001192-5	chr9	3000704	3001704	+	854.8666380000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	37539.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30325245-4	chr14	30324772	30325772	+	854.8583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 3 of 46)	MLT1K|LTR|ERVL-MaLR	28214.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59064124-4	chr15	59063630	59064630	+	854.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 1 of 14)	intron (NM_144800, intron 1 of 14)	17896.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24046666-5	chr5	24046078	24047078	+	854.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15888.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	69.5	96.5	60.5	34.0	73.0	36.0
Merged-chr19-5729227-8	chr19	5728644	5729644	+	854.8402710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181452, intron 1 of 1)	intron (NM_181452, intron 1 of 1)	522.0	NM_181452	17826.0	Mm.391142	NM_023166	ENSMUSG00000024939	Fam89b	1110021A21Rik|MMTV|Mtvr2	family with sequence similarity 89, member B	protein-coding	25.0	53.5	38.5	8.5	24.0	34.0
Merged-chr11-103222941-2	chr11	103222457	103223457	+	854.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 14 of 15)	B1_Mur4|SINE|Alu	-4525.0	NM_177801	328019.0	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119056236-2	chr11	119055700	119056700	+	854.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTA)n|Simple_repeat|Simple_repeat	-15287.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139300754-2	chr5	139300254	139301254	+	854.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 3 of 10)	intron (NM_172723, intron 3 of 10)	24710.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-81750269-4	chr17	81749757	81750757	+	854.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11870.0	NM_011406	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87469796-2	chr11	87469296	87470296	+	854.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	42205.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.0	2.0	1.5	0.0	4.5	0.0
Merged-chr13-55841496-3	chr13	55841001	55842001	+	854.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-10076.0	NM_011097	18740.0	Mm.135195	NM_011097	ENSMUSG00000021506	Pitx1	Bft|P-OTX|Potx|Ptx1	paired-like homeodomain transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44997008-2	chr13	44996508	44997508	+	854.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_025772, intron 1 of 9)	intron (NM_025772, intron 1 of 9)	5088.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120886681-2	chr11	120886181	120887181	+	854.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_027745, intron 10 of 18)	intron (NM_027745, intron 10 of 18)	46191.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-23382199-3	chr1	23381678	23382678	+	854.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081079, intron 1 of 6)	intron (NM_001081079, intron 1 of 6)	997.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120236573-3	chr11	120236079	120237079	+	854.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198423, intron 1 of 27)	CpG	3632.0	NM_198423	268515.0	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-45970369-3	chr16	45969880	45970880	+	854.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152226, exon 3 of 3)	non-coding (NR_152226, exon 3 of 3)	24774.0	NR_152227	100503378.0	Mm.387133	NR_152226	ENSMUSG00000085826	Gm15638	Gm41457	predicted gene 15638	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-68119924-4	chr18	68119410	68120410	+	854.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	RMER19B|LTR|ERVK	-108036.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	4.0	4.0	3.5	0.0	4.5	6.5
Merged-chr5-23132455-3	chr5	23131955	23132955	+	854.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029990, intron 2 of 2)	RLTR11B|LTR|ERVK	301898.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	14.5	20.5	9.5	16.5	18.5	14.0
Merged-chr6-114854309-3	chr6	114853793	114854793	+	854.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	67528.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-80319200-3	chr8	80318667	80319667	+	854.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-174878.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100083604-5	chr12	100082912	100083912	+	854.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	-28919.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99236437-2	chr5	99235935	99236935	+	854.7999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_145839, intron 4 of 13)	intron (NM_145839, intron 4 of 13)	16492.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	6.0	5.5	8.0	11.0	3.5
Merged-chr1-55238000-5	chr1	55237496	55238496	+	854.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175439, exon 1 of 1)	exon (NM_175439, exon 1 of 1)	819.0	NM_175439	212679.0	Mm.19223	NM_175439	ENSMUSG00000046994	Mars2	C730026E21Rik|MetRS	methionine-tRNA synthetase 2 (mitochondrial)	protein-coding	5.0	3.0	6.5	1.5	2.5	0.5
Merged-chr6-120198150-3	chr6	120197669	120198669	+	854.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347432, intron 2 of 3)	intron (NM_001347432, intron 2 of 3)	4346.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59853337-4	chr4	59852795	59853795	+	854.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	(GA)n|Simple_repeat|Simple_repeat	47645.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	3.0	3.0	1.5	0.0	0.0	1.5
Merged-chr6-125516113-4	chr6	125515615	125516615	+	854.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21355.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	0.0	12.0	5.5	9.5	21.0	7.0
Merged-chr13-34064079-4	chr13	34063502	34064502	+	854.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026512, exon 6 of 7)	exon (NM_026512, exon 6 of 7)	14006.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	6.5	2.0	5.5	0.0	0.0	7.0
Merged-chr11-54863248-3	chr11	54862679	54863679	+	854.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-2588.0	NM_029327	75530.0	Mm.83578	NM_029327	ENSMUSG00000020268	Lyrm7	1700024C24Rik|9330147L21Rik	LYR motif containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118506793-3	chr14	118506295	118507295	+	854.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163676, intron 26 of 29)	intron (NM_001163676, intron 26 of 29)	85677.0	NR_105815	102465208.0		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-50724716-2	chr8	50724216	50725216	+	854.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26D_MM|LTR|ERVK	356604.0	NR_046067	100039954.0	Mm.400419	NR_046067	ENSMUSG00000110281	Gm2516	-	predicted gene 2516	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-98062660-2	chr3	98062160	98063160	+	854.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 2 of 33)	(GA)n|Simple_repeat|Simple_repeat	49122.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134096645-2	chr1	134096145	134097145	+	854.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14597.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-34201463-2	chr14	34200963	34201963	+	854.75	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_183209, exon 1 of 2)	5' UTR (NM_183209, exon 1 of 2)	170.0	NM_183209	432839.0	Mm.294643	NM_183209	ENSMUSG00000071531	Gprin2	C130040D06Rik|C230073P13|Gm286|mKIAA0514	G protein regulated inducer of neurite outgrowth 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8682204-4	chr12	8681703	8682703	+	854.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030723, intron 1 of 20)	MTC|LTR|ERVL-MaLR	7522.0	NM_030723	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19004883-2	chr7	19004383	19005383	+	854.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_178757, exon 1 of 1)	exon (NM_178757, exon 1 of 1)	818.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	6.5	10.0	8.0	7.5	7.5	18.0
Merged-chr4-70621526-4	chr4	70621007	70622007	+	854.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86579.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120037445-2	chr11	120036931	120037931	+	854.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	4350.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	2.0	12.0	5.0	0.0	2.5	1.5
Merged-chr2-84961520-4	chr2	84961035	84962035	+	854.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18926.0	NM_008920	19074.0	Mm.142727	NM_008920	ENSMUSG00000027073	Prg2	EMBP|MBP|mMBP|mMBP-1	proteoglycan 2, bone marrow	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121572054-4	chr9	121571556	121572556	+	854.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14964.0	NR_040740	75384.0	Mm.445955	NR_040740	ENSMUSG00000084995	Lyzl4os	4930589B17Rik|4930596M17Rik	lysozyme-like 4, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-23081404-3	chr10	23080920	23081920	+	854.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-261292.0	NM_011545	21412.0	Mm.16497	NM_011545	ENSMUSG00000045680	Tcf21	Pod-1|Pod1|bHLHa23|capsulin|epc|epicardin	transcription factor 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54405993-3	chr14	54405507	54406507	+	854.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	L1M2|LINE|L1	3465.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	6.5	17.0	15.5	4.0	10.0	21.0
Merged-chr1-138134421-3	chr1	138133912	138134912	+	854.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	40714.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75639671-4	chr7	75639104	75640104	+	854.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	184070.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	6.5	8.5	4.0	14.0	36.0	28.0
Merged-chr3-33801065-4	chr3	33800588	33801588	+	854.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290502, intron 2 of 9)	intron (NM_001290502, intron 2 of 9)	905.0	NM_001290500	67120.0	Mm.275710	NM_025978	ENSMUSG00000027677	Ttc14	2700016E08Rik|4930434D01Rik|4931403I22Rik|4933402I15Rik|AI662468|AU014779|AW561908|cI-44|mKIAA1980	tetratricopeptide repeat domain 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70306254-4	chr11	70305752	70306752	+	854.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR73|LTR|ERV1	16278.0	NM_145684	11685.0	Mm.274093	NM_145684	ENSMUSG00000018907	Alox12e	12-LOX|8-LOX|AW259591|Alox12-ps1|Alox12-ps2|Aloxe|e-LOX1	arachidonate lipoxygenase, epidermal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134102599-4	chr6	134102089	134103089	+	854.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	66889.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	9.0	10.0	6.5	8.5	3.0	4.5
Merged-chr2-90486521-4	chr2	90485977	90486977	+	854.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-7303.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	5.0	33.5	36.0	22.0	16.5	29.5
Merged-chr11-89061596-4	chr11	89061107	89062107	+	854.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019505)	promoter-TSS (NM_019505)	856.0	NR_110336	414094.0	Mm.124287	NM_001001497		Dgkeos	A930013B10Rik	diacylglycerol kinase, epsilon, opposite strand	ncRNA	0.0	2.0	4.0	0.0	2.0	4.0
Merged-chr2-129328455-4	chr2	129327950	129328950	+	854.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-18478.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	7.0	12.0	0.5	19.5	0.0	4.5
Merged-chr4-44166860-3	chr4	44166363	44167363	+	854.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038993, intron 1 of 11)	intron (NM_001038993, intron 1 of 11)	675.0	NM_175201	73469.0	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109394636-3	chr4	109394137	109395137	+	854.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11620.0	NR_131195	102635290.0	Mm.427859	NR_131195		Ttc39aos1	Gm12750|lincRNA-EPS	Ttc39a opposite strand RNA 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-117277040-3	chr6	117276540	117277540	+	854.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108505.0	NM_021704	20315.0	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69193227-3	chr3	69192733	69193733	+	854.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29186.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	11.0	3.0	0.0	0.0	3.5	4.0
Merged-chr15-96953639-3	chr15	96953138	96954138	+	854.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66721.0	NM_001358060	69354.0	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-6357741-3	chr7	6357240	6358240	+	854.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-5568.0	NM_001025163	330463.0	Mm.136456	NM_177888	ENSMUSG00000055150	Zfp78	A330079D15|KRAB12|Zfp77	zinc finger protein 78	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129630694-4	chr2	129630234	129631234	+	854.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291021, exon 6 of 6)	3' UTR (NM_001291021, exon 6 of 6)	35272.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	7.5	11.0	9.0	2.5	10.0	16.0
Merged-chr2-126712699-3	chr2	126712190	126713190	+	854.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019729, intron 1 of 18)	intron (NM_019729, intron 1 of 18)	5362.0	NM_019729	84092.0	Mm.272629	NM_019729	ENSMUSG00000027363	Usp8	AI574262|AW557536|Ubpy|mKIAA0055	ubiquitin specific peptidase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54659134-3	chr6	54658633	54659633	+	854.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-22491.0	NM_001289741	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25860663-3	chr17	25860157	25861157	+	854.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163766, exon 3 of 41)	exon (NM_001163766, exon 3 of 41)	858.0	NM_001163766	106618.0	Mm.35470	NM_134124	ENSMUSG00000073434	Wdr90	3230401M21Rik|AI551153|mKIAA1924	WD repeat domain 90	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47629014-3	chr17	47628490	47629490	+	854.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1700.0	NM_198421	224836.0	Mm.59393	NM_198421	ENSMUSG00000090115	Usp49	C330046L10Rik|Gm545	ubiquitin specific peptidase 49	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-16558087-3	chr16	16557625	16558625	+	854.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	2094.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32403581-3	chr17	32403078	32404078	+	854.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347343)	promoter-TSS (NM_001347343)	4.0	NM_178785	320484.0	Mm.122284	NM_178785	ENSMUSG00000052142	Rasal3	A430107D22Rik	RAS protein activator like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-51466338-3	chr6	51465841	51466841	+	854.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_182650, exon 5 of 10)	exon (NM_182650, exon 5 of 10)	3553.0	NR_104468	53379.0	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	0.5	0.0	1.5	0.5	0.0	2.0
Merged-chr11-45808059-3	chr11	45807568	45808568	+	854.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045876)	promoter-TSS (NR_045876)	-15.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0.0	8.5	2.5	0.0	0.0	3.0
Merged-chr6-58756820-4	chr6	58756320	58757320	+	854.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74645.0	NM_001361967	73998.0	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42958324-3	chr10	42957819	42958819	+	854.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172938, exon 9 of 9)	3' UTR (NM_172938, exon 9 of 9)	32843.0	NR_153349	327749.0	Mm.428887	NR_153349		Gm5079	C230040G06	predicted gene 5079	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132899328-3	chr4	132898837	132899837	+	854.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163792, exon 8 of 8)	3' UTR (NM_001163792, exon 8 of 8)	-14879.0	NM_133887	100226.0	Mm.28237	NM_133887	ENSMUSG00000028879	Stx12	AI850350|AU041521|Stx13	syntaxin 12	protein-coding	10.5	19.0	12.5	0.0	1.5	0.0
Merged-chr13-75871555-3	chr13	75871046	75872046	+	854.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028493, exon 12 of 12)	3' UTR (NM_028493, exon 12 of 12)	31660.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	9.0	6.0	14.5	24.5	47.0	14.5
Merged-chr2-34898036-3	chr2	34897548	34898548	+	854.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028716, intron 13 of 14)	intron (NM_028716, intron 13 of 14)	15928.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191287185-2	chr1	191286685	191287685	+	854.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30933.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-23975296-4	chr1	23974807	23975807	+	854.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	30333.0	NM_026503	68002.0	Mm.250424	NM_026503	ENSMUSG00000026154	Sdhaf4	1110058L19Rik|1700001E18Rik|C6orf57	succinate dehydrogenase complex assembly factor 4	protein-coding	0.0	0.0	3.0	0.0	3.0	0.0
Merged-chr2-177398276-3	chr2	177397756	177398756	+	854.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66486.0	NM_001177568	628308.0	Mm.460436	NM_001177568	ENSMUSG00000078866	Zfp970	Gm14420	zinc finger protein 970	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153163145-3	chr2	153162649	153163649	+	854.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	intron (NM_133847, intron 1 of 17)	1848.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117792298-1	chr10	117791798	117792798	+	854.6666869999999	f0_balb.idr	intron (NM_134010, intron 1 of 27)	CpG	407.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122952348-3	chr5	122951841	122952841	+	854.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003953, intron 6 of 22)	CpG	36758.0	NM_001003953	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	0.0	0.0	1.5	3.5	0.0	0.5
Merged-chr1-149971759-2	chr1	149971259	149972259	+	854.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-10469.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128332774-2	chr10	128332274	128333274	+	854.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4953.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-66862557-4	chr8	66862079	66863079	+	854.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163564, intron 1 of 7)	intron (NM_001163564, intron 1 of 7)	2362.0	NM_001163564	234344.0	Mm.334561	NM_001163564	ENSMUSG00000014907	Naf1	Gm174	nuclear assembly factor 1 ribonucleoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59212504-4	chr11	59212013	59213013	+	854.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001130408, exon 5 of 5)	3' UTR (NM_001130408, exon 5 of 5)	4152.0	NM_024210	67862.0	Mm.358708	NM_024210	ENSMUSG00000020441	2310033P09Rik	Mmtag2	RIKEN cDNA 2310033P09 gene	protein-coding	5.5	9.0	4.0	0.5	9.0	3.5
Merged-chr11-93987184-3	chr11	93986643	93987643	+	854.650024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8948.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	19.0	26.5	34.5	0.0	10.0	13.0
Merged-chr10-51553974-4	chr10	51553476	51554476	+	854.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36484.0	NM_029894	77296.0	Mm.30588	NM_029894	ENSMUSG00000019909	Fam162b	9430073N08Rik	family with sequence similarity 162, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3833928-3	chr12	3833396	3834396	+	854.633301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	26736.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-52198355-4	chr14	52197848	52198848	+	854.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_201637, exon 37 of 37)	3' UTR (NM_201637, exon 37 of 37)	-1109.0	NM_033618	114741.0	Mm.21662	NM_033618	ENSMUSG00000035726	Supt16	Cdc68|Fact140|Spt16|Supt16h	suppressor of Ty 16	protein-coding	27.5	63.0	43.5	14.5	35.0	23.0
Merged-chr6-17655319-3	chr6	17654798	17655798	+	854.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007604, intron 4 of 9)	intron (NM_007604, intron 4 of 9)	18288.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	10.5	30.0	22.0	13.0	26.0	23.5
Merged-chr10-22701697-3	chr10	22701199	22702199	+	854.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178934, intron 4 of 4)	intron (NM_178934, intron 4 of 4)	27733.0	NR_106123	102465768.0		NR_106123	ENSMUSG00000098714	Mir7663	Gm28034|mmu-mir-7663	microRNA 7663	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145829712-4	chr2	145829265	145830265	+	854.607178	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	43649.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93435768-3	chr2	93435297	93436297	+	854.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271430, intron 2 of 8)	intron (NM_001271430, intron 2 of 8)	-13790.0	NR_105967	102465605.0		NR_105967	ENSMUSG00000099238	Mir7001	Gm27886|mmu-mir-7001	microRNA 7001	ncRNA	0.0	3.0	4.5	0.0	3.0	4.5
Merged-chr12-105722864-4	chr12	105722412	105723412	+	854.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030187, intron 4 of 17)	intron (NM_030187, intron 4 of 17)	16930.0	NM_030187	78801.0	Mm.36006	NM_030187	ENSMUSG00000041323	Ak7	4930502N02Rik|AK 7	adenylate kinase 7	protein-coding	4.5	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3911947-2	chr12	3911447	3912447	+	854.583374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001271753, exon 23 of 23)	3' UTR (NM_001271753, exon 23 of 23)	20203.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-136688168-4	chr3	136687671	136688671	+	854.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	18105.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38494883-4	chr18	38494381	38495381	+	854.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75974.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-79175532-2	chr17	79175025	79176025	+	854.5833130000001	f0_c57.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	123619.0	NM_001316729	70536.0	Mm.293870	NM_027455	ENSMUSG00000024084	Qpct	5730422A13Rik	glutaminyl-peptide cyclotransferase (glutaminyl cyclase)	protein-coding	10.0	22.5	11.0	3.0	2.5	4.0
Merged-chr13-56004005-4	chr13	56003528	56004528	+	854.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131522.0	NM_012015	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0.0	2.0	4.5	0.0	2.5	1.5
Merged-chr6-84661880-3	chr6	84661315	84662315	+	854.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 20 of 21)	intron (NM_177077, intron 20 of 21)	-67907.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138442474-4	chr5	138441974	138442974	+	854.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028130, intron 1 of 4)	intron (NM_028130, intron 1 of 4)	998.0	NM_028130	72154.0	Mm.20263	NM_028130	ENSMUSG00000036898	Zfp157	2610020C11Rik|A630094N24Rik|AI327407|Roma|mszf12|mszf23-1	zinc finger protein 157	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83568297-4	chr7	83567811	83568811	+	854.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16620.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	0.5	0.0	0.5	1.5	6.5	0.0
Merged-chr19-53449368-4	chr19	53448890	53449890	+	854.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028427, exon 5 of 10)	non-coding (NR_028427, exon 5 of 10)	15406.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	0.0	2.0	3.0	1.0	0.0	0.0
Merged-chr11-107131306-6	chr11	107130877	107131877	+	854.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_176850, exon 1 of 28)	exon (NM_176850, exon 1 of 28)	545.0	NM_176850	207165.0	Mm.343986	NM_176850	ENSMUSG00000040481	Bptf	9430093H17Rik|Falz	bromodomain PHD finger transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16453421-4	chr7	16452948	16453948	+	854.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026938, intron 1 of 2)	intron (NM_026938, intron 1 of 2)	669.0	NM_026938	69094.0	Mm.29633	NM_026938	ENSMUSG00000019158	Tmem160	1810008O21Rik	transmembrane protein 160	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50437363-2	chr16	50436863	50437863	+	854.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-4897.0	NM_001347240	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134569921-2	chr5	134569421	134570421	+	854.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2155.0	NR_106087	102465708.0		NR_106087	ENSMUSG00000106323	Mir7228	mmu-mir-7228	microRNA 7228	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9756403-2	chr13	9755903	9756903	+	854.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347474, intron 1 of 14)	B1_Mm|SINE|Alu	7407.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-40974717-2	chr5	40974217	40975217	+	854.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	732974.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-82335350-2	chr14	82334850	82335850	+	854.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	1739940.0	NR_153783	102635012.0	Mm.399509	NR_153783	ENSMUSG00000115043	Gm32455	-	predicted gene, 32455	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80693772-7	chr10	80693216	80694216	+	854.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	8104.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-57692006-2	chr3	57691506	57692506	+	854.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033349, intron 1 of 3)	intron (NM_001033349, intron 1 of 3)	531.0	NM_001033349	242037.0	Mm.291091	NM_001033349	ENSMUSG00000074591	Ankub1	Gm410	ankrin repeat and ubiquitin domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90441587-2	chr7	90441087	90442087	+	854.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR18B|LTR|ERVK	-1194.0	NR_073436	233490.0	Mm.29496	NM_145151	ENSMUSG00000051451	Crebzf	1110034C16Rik|6330417B10Rik|LAZip|LAZipII|SMILE|Zf	CREB/ATF bZIP transcription factor	protein-coding	6.0	2.0	1.0	6.0	2.0	1.0
Merged-chr14-61860866-4	chr14	61860361	61861361	+	854.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-178488.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	1.0	4.5	4.5	1.5	2.5	5.0
Merged-chr12-119137783-2	chr12	119137283	119138283	+	854.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100493.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-53390836-3	chr9	53390401	53391401	+	854.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212445, intron 3 of 7)	intron (NM_212445, intron 3 of 7)	6878.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52087716-2	chr3	52087216	52088216	+	854.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	17290.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-104818438-2	chr13	104817938	104818938	+	854.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026075, intron 1 of 4)	intron (NM_026075, intron 1 of 4)	1268.0	NR_135272	67288.0	Mm.125465	NM_026075	ENSMUSG00000021716	Srek1ip1	3110031B13Rik|AI462702|AV348305|AW121048|Sfrs12ip1|Srsf12ip1	splicing regulatory glutamine/lysine-rich protein 1interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50157023-2	chr11	50156523	50157523	+	854.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001290759, exon 12 of 22)	exon (NM_001290759, exon 12 of 22)	-17828.0	NM_026543	68067.0	Mm.40828	NM_026543	ENSMUSG00000020381	Mrnip	2900016G09Rik|3010026O09Rik|AI851514|AW475975	MRN complex interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25493185-2	chr14	25492669	25493669	+	854.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	33984.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	5.0	1.5	0.0	0.0	4.0	0.0
Merged-chr16-38091317-2	chr16	38090770	38091770	+	854.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 1 of 11)	intron (NM_001347232, intron 1 of 11)	-2010.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	37.0	44.5	62.0	26.0	72.0	54.5
Merged-chr5-121387204-2	chr5	121386704	121387704	+	854.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1589.0	NM_172275	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	76.5	105.0	57.0	79.5	137.5	80.5
Merged-chr10-81195954-2	chr10	81195454	81196454	+	854.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_015477, intron 1 of 2)	intron (NR_015477, intron 1 of 2)	1263.0	NR_015477	69678.0	Mm.81562	NR_015477		Atcayos	2310050B05Rik	ataxia, cerebellar, Cayman type, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69801097-3	chr11	69800619	69801619	+	854.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010198, intron 1 of 5)	CpG	597.0	NM_001291104	14166.0	Mm.269011	NM_010198	ENSMUSG00000042826	Fgf11	Fgf-11|Fhf-3|Fhf3	fibroblast growth factor 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29228285-4	chr19	29227785	29228785	+	854.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23518.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100625671-2	chr11	100625171	100626171	+	854.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177790)	TTS (NM_177790)	2716.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97229409-2	chr3	97228909	97229909	+	854.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2045.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58256484-2	chr9	58255984	58256984	+	854.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_028146, intron 3 of 7)	ORR1F|LTR|ERVL-MaLR	3320.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45053819-2	chr2	45053319	45054319	+	854.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-30642.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-94254184-1	chr6	94253684	94254684	+	854.5	f0_balb.idr	intron (NM_001029850, intron 1 of 23)	intron (NM_001029850, intron 1 of 23)	-16742.0	NR_130996	78178.0	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	0.0	8.5	0.0	0.0	8.5	1.0
Merged-chr12-52392517-2	chr12	52392017	52393017	+	854.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88092.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120547593-2	chr8	120547093	120548093	+	854.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 1 of 15)	intron (NM_001145896, intron 1 of 15)	8897.0	NR_106159	102466849.0		NR_106159	ENSMUSG00000098280	Mir7687	Gm27573|mmu-mir-7687	microRNA 7687	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122921319-2	chr3	122920819	122921819	+	854.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_046036, intron 1 of 5)	intron (NR_046036, intron 1 of 5)	2797.0	NR_046036	74057.0	Mm.159123	NR_046036	ENSMUSG00000097852	4933405D12Rik	-	RIKEN cDNA 4933405D12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75579687-2	chr11	75579182	75580182	+	854.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-8397.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	2.5	3.5	1.0	0.5	1.0	0.0
Merged-chr8-94485476-2	chr8	94484974	94485974	+	854.466675	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033207, intron 11 of 48)	B3A|SINE|B2	12711.0	NM_001033207	434341.0	Mm.334720	NM_001033207	ENSMUSG00000074151	Nlrc5	AI451557|AK220210|NOD27	NLR family, CARD domain containing 5	protein-coding	7.5	21.0	10.5	3.5	20.5	14.0
Merged-chr7-120679217-4	chr7	120678679	120679679	+	854.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164580, intron 1 of 2)	intron (NM_001164580, intron 1 of 2)	1559.0	NM_001164580	233812.0	Mm.276479	NM_001164580	ENSMUSG00000046096	Mosmo	Atthog	modulator of smoothened	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-105327099-4	chr13	105326614	105327614	+	854.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-32629.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0.0	0.0	2.0	0.0	4.0	0.0
Merged-chr15-59719567-4	chr15	59719064	59720064	+	854.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70910.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45086522-3	chr2	45086005	45087005	+	854.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	CT-rich|Low_complexity|Low_complexity	23772.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33917138-2	chr17	33916638	33917638	+	854.4375	f1_balb.idr|f1_c57bl6.idr	exon (NM_020625, exon 2 of 2)	exon (NM_020625, exon 2 of 2)	962.0	NM_020625	81630.0	Mm.482096	NM_020625	ENSMUSG00000051390	Zbtb22	1110008J20Rik|AI265210|AI415166|Bing1|Zfp297	zinc finger and BTB domain containing 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-30365808-4	chr18	30365304	30366304	+	854.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92939.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-50113008-5	chr18	50112497	50113497	+	854.434265	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-15204.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	27.5	48.5	31.0	15.0	18.0	13.5
Merged-chr11-110473624-4	chr11	110473110	110474110	+	854.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	-4905.0	NM_001356347	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	15.0	11.0	8.5	0.5	0.0	0.0
Merged-chr7-128302355-4	chr7	128301860	128302860	+	854.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4229.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49825140-2	chr11	49824640	49825640	+	854.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_013529, intron 13 of 18)	intron (NM_013529, intron 13 of 18)	-21611.0	NM_001163671	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55734109-3	chr14	55733616	55734616	+	854.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11568.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41468815-4	chr4	41468309	41469309	+	854.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025539, intron 1 of 2)	intron (NM_025539, intron 1 of 2)	3661.0	NM_025539	66401.0	Mm.28574	NM_025539	ENSMUSG00000028443	Nudt2	2310051L06Rik|AA939917|APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-190944501-4	chr1	190943979	190944979	+	854.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357133, intron 8 of 8)	intron (NM_001357133, intron 8 of 8)	15657.0	NM_001357133	52477.0	Mm.289914	NM_021421	ENSMUSG00000026634	Angel2	2610307I21Rik|5730410O10Rik|AI845692|D1Ertd396e|D1Ertd654e	angel homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-85325284-4	chr6	85324793	85325793	+	854.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178639, intron 1 of 13)	intron (NM_178639, intron 1 of 13)	8129.0	NM_178639	94282.0	Mm.121485	NM_178639	ENSMUSG00000033720	Sfxn5	C230001H08Rik	sideroflexin 5	protein-coding	3.0	0.0	0.5	0.5	0.0	5.0
Merged-chr5-31054155-4	chr5	31053695	31054695	+	854.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023525)	promoter-TSS (NM_023525)	-585.0	NM_023525	69719.0	Mm.305535	NM_023525	ENSMUSG00000013629	Cad	2410008J01Rik|AU018859|Cpad	carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63397982-2	chr4	63397482	63398482	+	854.375	f1_balb.idr|f1_c57bl6.idr	exon (NM_001305432, exon 1 of 21)	exon (NM_001305432, exon 1 of 21)	258.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167961236-4	chr2	167960758	167961758	+	854.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	28931.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125870980-4	chr8	125870468	125871468	+	854.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175561, intron 8 of 33)	intron (NM_175561, intron 8 of 33)	-26946.0	NR_155422	102632990.0	Mm.429446	NR_155422		A730098A19Rik	-	RIKEN cDNA A730098A19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-37867066-4	chr6	37866551	37867551	+	854.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-3760.0	NM_001272064	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22809720-2	chr8	22809220	22810220	+	854.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4066.0	NM_001122820	64933.0	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	7.5	35.0	14.0	7.5	37.5	10.5
Merged-chr7-35025188-2	chr7	35024688	35025688	+	854.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 11 of 14)	intron (NM_008820, intron 11 of 14)	31378.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136249944-2	chr4	136249444	136250444	+	854.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011542, intron 1 of 10)	intron (NM_011542, intron 1 of 10)	1987.0	NM_011542	21401.0	Mm.112	NM_011542	ENSMUSG00000001604	Tcea3	S-II|SII-K1	transcription elongation factor A (SII), 3	protein-coding	0.0	0.5	0.0	0.0	0.5	1.0
Merged-chr17-5578461-2	chr17	5577961	5578961	+	854.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	85861.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88245619-2	chr1	88245119	88246119	+	854.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 23 of 41)	intron (NM_001281466, intron 23 of 41)	18599.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49246748-3	chr7	49246244	49247244	+	854.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175272, exon 1 of 38)	5' UTR (NM_175272, exon 1 of 38)	555.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141568509-4	chr7	141568005	141569005	+	854.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357068, intron 1 of 21)	intron (NM_001357068, intron 1 of 21)	6325.0	NM_007459	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-66112470-3	chr17	66111951	66112951	+	854.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037757, intron 1 of 10)	RMER15|LTR|ERVL	806.0	NM_001037757	68767.0	Mm.296545	NM_026833	ENSMUSG00000024101	Washc1	1110049F14Rik|ORF19|Wash|Wash1	WASH complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	3.0	0.5
Merged-chr14-54569198-3	chr14	54568711	54569711	+	854.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010590, intron 7 of 7)	intron (NM_010590, intron 7 of 7)	8450.0	NM_010590	16475.0	Mm.100253	NM_010590	ENSMUSG00000022178	Ajuba	Jub	ajuba LIM protein	protein-coding	0.5	0.0	0.0	6.0	0.0	0.0
Merged-chr15-58818204-4	chr15	58817715	58818715	+	854.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175212, intron 1 of 6)	MLT1D|LTR|ERVL-MaLR	5212.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160062684-4	chr2	160062199	160063199	+	854.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46046.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	0.0	2.5	16.0	0.0	2.0	3.5
Merged-chr2-33962225-3	chr2	33961719	33962719	+	854.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-74273.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6270483-3	chr17	6269985	6270985	+	854.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033178)	promoter-TSS (NM_001033178)	15.0	NM_001033178	77106.0	Mm.381893	NM_001033178	ENSMUSG00000038141	Tmem181a	5930418K15Rik|C76977|Gpr178|Tmem181|mKIAA1423	transmembrane protein 181A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-51108873-3	chr2	51108369	51109369	+	854.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40242.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20390779-3	chr10	20390287	20391287	+	854.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42968.0	NM_027930	71804.0	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126587296-3	chr7	126586715	126587715	+	854.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_138310, exon 2 of 4)	exon (NM_138310, exon 2 of 4)	-1398.0	NM_001146311	12752.0	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26439017-3	chr17	26438541	26439541	+	854.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081656, exon 3 of 5)	exon (NM_001081656, exon 3 of 5)	24076.0	NM_001081656	240055.0	Mm.133211	NM_001081656	ENSMUSG00000034413	Neurl1b	C230078M08Rik|EG240055	neuralized E3 ubiquitin protein ligase 1B	protein-coding	1.0	10.5	14.5	2.5	3.0	7.0
Merged-chr6-143167873-3	chr6	143167365	143168365	+	854.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029250, intron 1 of 7)	CpG	635.0	NM_029250	75320.0	Mm.272548	NM_029250	ENSMUSG00000030275	Etnk1	1110061E11Rik|4930555L11Rik|AI195356|AI841245|C80956|D6Ertd3e|EKI1	ethanolamine kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70385296-3	chr9	70384797	70385797	+	854.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 26 of 27)	intron (NM_181072, intron 26 of 27)	20456.0	NR_049200	100885839.0		NR_049200	ENSMUSG00000093763	Mir5626	Gm25590|mir-5626|mmu-mir-5626	microRNA 5626	ncRNA	0.0	0.5	0.0	1.0	0.0	1.0
Merged-chr2-125280839-3	chr2	125280339	125281339	+	854.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33324.0	NM_023595	110074.0	Mm.282499	NM_023595	ENSMUSG00000027203	Dut	5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase	deoxyuridine triphosphatase	protein-coding	0.0	3.5	2.0	3.0	2.5	4.5
Merged-chr15-90649534-3	chr15	90649034	90650034	+	854.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033851, intron 1 of 3)	intron (NM_001033851, intron 1 of 3)	29854.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	2.5	3.0	2.5	2.0	2.0	5.0
Merged-chr7-96519365-3	chr7	96518864	96519864	+	854.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310762, intron 4 of 32)	intron (NM_001310762, intron 4 of 32)	-177400.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24913157-3	chr16	24912665	24913665	+	854.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-146474.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152396397-3	chr2	152395884	152396884	+	854.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011438, exon 1 of 1)	3' UTR (NM_011438, exon 1 of 1)	1662.0	NM_011438	20667.0	Mm.28424	NM_011438	ENSMUSG00000051817	Sox12	2010205A02Rik	SRY (sex determining region Y)-box 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95729123-3	chr11	95728624	95729624	+	854.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5538.0	NR_028263	320616.0	Mm.428140	NM_177209	ENSMUSG00000075596	B130006D01Rik	-	RIKEN cDNA B130006D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108416036-4	chr3	108415537	108416537	+	854.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017392)	promoter-TSS (NM_017392)	-543.0	NM_001004177	53883.0	Mm.39728	NM_017392	ENSMUSG00000068740	Celsr2	Adgrc2|EGFL2|Flamingo1|flamingo|mKIAA0279|mfmi1	cadherin, EGF LAG seven-pass G-type receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146159578-4	chr3	146159066	146160066	+	854.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 1 of 13)	ORR1B1|LTR|ERVL-MaLR	9392.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81745105-4	chr15	81744564	81745564	+	854.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081016, exon 1 of 23)	5' UTR (NM_001081016, exon 1 of 23)	216.0	NM_001081016	20286.0	Mm.432075	NM_001081016	ENSMUSG00000022390	Zc3h7b	Gm627|Scrg3|Zc2h7b|mKIAA1031	zinc finger CCCH type containing 7B	protein-coding	0.0	1.0	10.5	0.0	13.0	3.5
Merged-chr2-167067749-4	chr2	167067246	167068246	+	854.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2453.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102453019-3	chr12	102452509	102453509	+	854.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-13196.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	69.5	117.0	50.0	44.0	105.0	70.0
Merged-chr8-77506721-3	chr8	77506224	77507224	+	854.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 1 of 22)	intron (NM_030113, intron 1 of 22)	-10332.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-52098575-4	chr14	52098065	52099065	+	854.270874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360183, intron 1 of 8)	intron (NM_001360183, intron 1 of 8)	5456.0	NM_001360178	15381.0	Mm.427321	NM_016884	ENSMUSG00000060373	Hnrnpc	AL022939|D14Wsu171e|Hnrpc|Hnrpc1|Hnrpc2|hnRNPC1|hnRNPC2|hnrnp-C	heterogeneous nuclear ribonucleoprotein C	protein-coding	10.0	26.0	47.0	13.5	14.5	34.0
Merged-chr7-45450020-3	chr7	45449493	45450493	+	854.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030678, intron 12 of 15)	ID_B1|SINE|B4	9893.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55644348-6	chr14	55643819	55644819	+	854.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028780)	promoter-TSS (NM_028780)	-513.0	NM_028780	74140.0	Mm.132857	NM_028780	ENSMUSG00000002320	Tm9sf1	1200014D02Rik|AI893436|MP70	transmembrane 9 superfamily member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94129866-4	chr11	94129355	94130355	+	854.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81599.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0.0	0.0	0.0	2.0	0.0	0.0
Merged-chr2-165921948-2	chr2	165921448	165922448	+	854.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-37110.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	30.0	84.0	44.5	43.5	92.5	49.5
Merged-chr15-76119352-2	chr15	76118852	76119852	+	854.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001142968)	TTS (NM_001142968)	843.0	NM_144848	223650.0	Mm.259929	NM_144848		Eppk1	6230424I18Rik|EPIPL|EPIPL1|EPPK	epiplakin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40464069-4	chr12	40463581	40464581	+	854.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	18028.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-28924024-3	chr2	28923497	28924497	+	854.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7329.0	NM_001355434	54422.0	Mm.21390	NM_019446	ENSMUSG00000026805	Barhl1	Dres115|MBH2	BarH like homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-133122240-7	chr7	133121797	133122797	+	854.238098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009980, intron 1 of 10)	CpG	1186.0	NM_009980	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103365607-5	chr15	103365132	103366132	+	854.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001314041, intron 1 of 30)	intron (NM_001314041, intron 1 of 30)	1159.0	NM_010577	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-39996432-3	chr12	39995854	39996854	+	854.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41022.0	NM_007487	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-91029195-3	chr10	91028736	91029736	+	854.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042558, intron 17 of 26)	L1MB4|LINE|L1	53507.0	NM_001042558	11783.0	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	4.5	4.0	6.5	8.5	6.0	6.0
Merged-chr16-90694938-3	chr16	90694439	90695439	+	854.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32432.0	NM_025642	66578.0	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110382497-4	chr7	110381994	110382994	+	854.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 17 of 40)	RMER10B|LTR|ERVL	160791.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73459911-4	chr2	73459453	73460453	+	854.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-6064.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90316060-4	chr16	90315558	90316558	+	854.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-31555.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119358966-2	chr8	119358466	119359466	+	854.2000119999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14428.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63111176-4	chr14	63110673	63111673	+	854.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11289.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156470511-3	chr1	156470055	156471055	+	854.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 1 of 15)	intron (NM_009230, intron 1 of 15)	3773.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	35.0	100.5	85.0	39.0	89.5	87.5
Merged-chr11-32534841-4	chr11	32534240	32535240	+	854.1750490000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	1474.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	43.5	39.5	49.5	12.0	71.5	55.0
Merged-chr18-11844199-3	chr18	11843698	11844698	+	854.172241	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022021, intron 1 of 8)	intron (NM_022021, intron 1 of 8)	-3760.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	0.0	3.0	0.5	8.0	11.0	4.0
Merged-chr13-95949566-4	chr13	95949084	95950084	+	854.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-57662.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	34.5	58.5	33.0	29.5	34.0	20.0
Merged-chr3-148958895-3	chr3	148958404	148959404	+	854.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4269.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.0	6.0	12.5	2.0	12.5	16.0
Merged-chr11-77491949-2	chr11	77491449	77492449	+	854.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1463.0	NM_001004144	216963.0	Mm.290182	NM_001004144	ENSMUSG00000011877	Git1	Cat-1|p95Cat	G protein-coupled receptor kinase-interactor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49999836-4	chr16	49999342	50000342	+	854.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19382.0	NR_045001	628951.0	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35937926-2	chr18	35937426	35938426	+	854.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26904.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-93725860-3	chr11	93725397	93726397	+	854.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	159869.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	2.0	0.0	0.5	3.0	0.0	0.0
Merged-chr2-75788620-6	chr2	75788075	75789075	+	854.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43602.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-5100500-2	chr7	5099989	5100989	+	854.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16422.0	NM_001145013	192658.0	Mm.28764	NM_138954	ENSMUSG00000035191	Rfpl4	D7Ertd486e|Rfpl4a	ret finger protein-like 4	protein-coding	11.0	34.5	43.5	24.0	24.0	35.0
Merged-chr9-25130578-4	chr9	25130059	25131059	+	854.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020586, exon 3 of 8)	exon (NM_020586, exon 3 of 8)	21222.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27450784-2	chr7	27450255	27451255	+	854.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_144923, intron 1 of 4)	MLTR14|LTR|ERV1	-1663.0	NM_001290525	233016.0	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	0.5	12.5	11.0	4.0	10.5	10.5
Merged-chr4-124663224-4	chr4	124662748	124663748	+	854.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5602.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84686787-2	chr18	84686287	84687287	+	854.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1085.0	NM_023149	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-34486172-4	chr12	34485651	34486651	+	854.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 4 of 27)	intron (NM_001271386, intron 4 of 27)	42738.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88621533-4	chr10	88621033	88622033	+	854.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16381.0	NM_175418	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	20.5	35.5	17.5	16.5	49.5	28.0
Merged-chr4-145219908-3	chr4	145219435	145220435	+	854.119019	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011610, exon 9 of 10)	exon (NM_011610, exon 9 of 10)	-24930.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120351135-3	chr11	120350627	120351627	+	854.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_038126)	TTS (NR_038126)	2449.0	NR_038126	66838.0	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113165026-3	chr5	113164522	113165522	+	854.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1709.0	NM_172884	243219.0	Mm.160131	NM_172884	ENSMUSG00000051339	2900026A02Rik	8430408O14Rik|A530094D01|AW539426|Gm449|Kiaa1671|mKIAA1671	RIKEN cDNA 2900026A02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13664731-3	chr9	13664229	13665229	+	854.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173776, intron 1 of 3)	intron (NM_173776, intron 1 of 3)	2269.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148170976-3	chr4	148170463	148171463	+	854.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10295.0	NM_176848	230904.0	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	0.0	0.0	2.0	3.0	0.0	0.0
Merged-chr8-53505682-4	chr8	53505162	53506162	+	854.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6040.0	NM_001205054	11593.0	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122569552-3	chr8	122569127	122570127	+	854.0833130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_026014, intron 3 of 9)	intron (NM_026014, intron 3 of 9)	1612.0	NM_026014	67177.0	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-22360765-4	chr17	22360274	22361274	+	854.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347330)	promoter-TSS (NM_001347330)	626.0	NM_176962	319615.0	Mm.442162	NM_176962	ENSMUSG00000033972	Zfp944	6330416L07Rik	zinc finger protein 944	protein-coding	23.0	94.5	55.5	6.0	14.0	12.0
Merged-chr17-35435002-3	chr17	35434535	35435535	+	854.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4120.0	NM_010394	15018.0	Mm.431282	NM_010394	ENSMUSG00000060550	H2-Q7	H-2Q7|Ped|Q9|Qa-2|Qa-7|Qa7	histocompatibility 2, Q region locus 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86184315-4	chr15	86183853	86184853	+	854.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-1375.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30564634-4	chr14	30564162	30565162	+	854.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009388, intron 4 of 13)	intron (NM_009388, intron 4 of 13)	-7487.0	NR_037237	100526475.0		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	15.0	28.5	31.0	24.0	22.5	28.5
Merged-chr18-52956658-4	chr18	52956159	52957159	+	854.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	188515.0	NM_001199154	67847.0	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67435608-4	chr18	67435114	67436114	+	854.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027130, intron 5 of 16)	intron (NM_027130, intron 5 of 16)	13522.0	NM_027130	69597.0	Mm.426052	NM_027130	ENSMUSG00000024527	Afg3l2	2310036I02Rik|AW260507|Emv66|par	AFG3-like AAA ATPase 2	protein-coding	3.5	0.0	3.0	6.0	6.5	3.5
Merged-chr9-18293277-5	chr9	18292635	18293635	+	854.0150150000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025844, intron 1 of 10)	intron (NM_025844, intron 1 of 10)	868.0	NM_025844	66917.0	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167756660-2	chr2	167756160	167757160	+	854.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	65483.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21708351-2	chr9	21707851	21708851	+	854.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44A|LTR|ERVK	-15225.0	NM_001252658	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139390603-2	chr7	139390103	139391103	+	854.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183144, intron 1 of 15)	intron (NM_183144, intron 1 of 15)	1494.0	NM_001127363	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31856616-2	chr17	31856125	31857125	+	854.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010831)	promoter-TSS (NM_010831)	-821.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	7.0	15.0	8.0	6.0	34.5	11.0
Merged-chr7-59248680-1	chr7	59248180	59249180	+	854.0	f0_balb.idr	intron (NM_011668, intron 4 of 12)	L1MB2|LINE|L1	19930.0	NM_173010	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38211845-3	chr18	38211339	38212339	+	854.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2077.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112995738-4	chr5	112995236	112996236	+	854.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	19802.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	2.0	2.5	8.5	0.0	4.0	5.5
Merged-chr12-91383694-3	chr12	91383203	91384203	+	854.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181815, intron 1 of 25)	MIRb|SINE|MIR	706.0	NM_181815	75216.0	Mm.312204	NM_181815	ENSMUSG00000061533	Cep128	4930534B04Rik|5430424K18Rik|AI449708|AI480494|E230024F20	centrosomal protein 128	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153162470-2	chr2	153161970	153162970	+	854.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	intron (NM_133847, intron 1 of 17)	1169.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114647470-3	chr5	114646965	114647965	+	854.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022017, intron 1 of 15)	intron (NM_022017, intron 1 of 15)	10956.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0.0	0.0	0.0	11.0	4.0	0.0
Merged-chr1-72280396-3	chr1	72279895	72280895	+	854.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356516, intron 1 of 6)	Tigger6a|DNA|TcMar-Tigger	3926.0	NM_023523	111175.0	Mm.281738	NM_023523	ENSMUSG00000026189	Pecr	2400003B18Rik|TERP	peroxisomal trans-2-enoyl-CoA reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-17788427-1	chr2	17787927	17788927	+	854.0	f0_balb.idr	Intergenic	Intergenic	-57359.0	NM_028757	74103.0	Mm.120298	NM_028757	ENSMUSG00000053702	Nebl	1200007O21Rik|A630080F05Rik|BB140644|D830029A09Rik|Lnebl	nebulette	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-72962755-2	chr17	72962255	72963255	+	854.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	44450.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-54826073-3	chr1	54825572	54826572	+	854.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 2 of 27)	intron (NM_001081433, intron 2 of 27)	100315.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0.0	0.0	2.5	0.0	1.5	3.0
Merged-chr13-49265677-2	chr13	49265177	49266177	+	854.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 16 of 17)	intron (NM_015759, intron 16 of 17)	-16971.0	NM_028340	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107307173-2	chr11	107306673	107307673	+	854.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	intron (NR_153311, intron 4 of 9)	-117792.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5490954-2	chr17	5490454	5491454	+	854.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-1646.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-16551119-3	chr2	16550615	16551615	+	854.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026162, intron 3 of 13)	intron (NM_026162, intron 3 of 13)	194811.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69451111-2	chr12	69450601	69451601	+	854.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24449.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	5.5	7.5	9.0	6.5	3.0	0.5
Merged-chr15-101337071-3	chr15	101336607	101337607	+	854.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32245.0	NR_035462	100316694.0		NR_035462	ENSMUSG00000088459	Mir1941	mmu-mir-1941	microRNA 1941	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-24594821-3	chr12	24594275	24595275	+	854.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145890, intron 6 of 13)	intron (NM_145890, intron 6 of 13)	14056.0	NM_145890	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	5.5	1.5	4.0	0.5	4.0	2.5
Merged-chr11-11684853-3	chr11	11684317	11685317	+	854.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1108.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32356152-2	chr2	32355652	32356652	+	854.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2823.0	NM_010065	13429.0	Mm.44736	NM_010065	ENSMUSG00000026825	Dnm1	AI838169|Dnm|Ftfl|mKIAA4093	dynamin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50998574-1	chr14	50998074	50999074	+	854.0	f0_c57.idr	Intergenic	Intergenic	-9177.0	NM_001162863	75019.0	Mm.318775	NM_029145	ENSMUSG00000021872	Rnase10	4930474F22Rik|Rah1	ribonuclease, RNase A family, 10 (non-active)	protein-coding	14.0	14.0	3.5	0.5	1.0	5.0
Merged-chr2-157096368-2	chr2	157095868	157096868	+	854.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001177439, exon 6 of 6)	exon (NM_001177439, exon 6 of 6)	9313.0	NM_001177439	383766.0	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14244358-3	chr2	14243864	14244864	+	854.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 3 of 29)	ID4|SINE|ID	14950.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92565933-2	chr16	92565423	92566423	+	854.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67776.0	NM_172469	209195.0	Mm.44747	NM_172469	ENSMUSG00000022949	Clic6	5730466J16Rik|AL022908|AW045520|CLIC1L	chloride intracellular channel 6	protein-coding	7.5	2.0	1.0	2.5	0.0	2.0
Merged-chr15-59056655-4	chr15	59056151	59057151	+	854.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 2 of 14)	intron (NM_144800, intron 2 of 14)	25375.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43655962-2	chr19	43655462	43656462	+	854.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13955.0	NR_152201	100043245.0	Mm.402688	NR_152201		Gm4311	-	predicted gene 4311	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88554260-3	chr3	88553839	88554839	+	854.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033526, intron 1 of 10)	(TC)n|Simple_repeat|Simple_repeat	623.0	NM_033526	94232.0	Mm.303059	NM_033526	ENSMUSG00000008604	Ubqln4	A1Up|A1u|AI663987|CIP75|UBIN	ubiquilin 4	protein-coding	1.0	5.5	5.5	1.0	2.5	3.0
Merged-chr2-74606290-1	chr2	74605790	74606790	+	854.0	f0_balb.idr	Intergenic	MLTR11B|LTR|ERVK	-27342.0	NM_027133	69605.0	Mm.156113	NM_027133	ENSMUSG00000009207	Lnpk	2310011O18Rik|4921514L11Rik|9530051D01Rik|AI666268|Lnp|Lnpk1|Ul|ulnaless	lunapark, ER junction formation factor	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr10-126025866-1	chr10	126025366	126026366	+	854.0	f1_balb.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	59647.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	0.0	0.0	3.0	4.0	0.0	7.0
Merged-chr5-130000155-3	chr5	129999689	130000689	+	854.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357027, intron 2 of 2)	intron (NM_001357027, intron 2 of 2)	2860.0	NM_010368	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	24.5	21.0	46.0	26.0	27.5	28.0
Merged-chr3-95676589-1	chr3	95676089	95677089	+	854.0	f0_balb.idr	3' UTR (NM_144899, exon 18 of 18)	3' UTR (NM_144899, exon 18 of 18)	11328.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-125459301-4	chr1	125458776	125459776	+	854.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-23549.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120576942-2	chr8	120576442	120577442	+	854.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 14 of 15)	intron (NM_001145896, intron 14 of 15)	12133.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-12927044-2	chr7	12926544	12927544	+	854.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029809)	promoter-TSS (NM_029809)	-372.0	NM_029809	381845.0	Mm.439896	NM_029809	ENSMUSG00000033967	Rnf225	2310014L17Rik|AV237412|C77118	ring finger protein 225	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-112433980-2	chr2	112433480	112434480	+	854.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21045.0	NM_133749	73024.0	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108275008-2	chr12	108274508	108275508	+	854.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001159910, exon 1 of 6)	exon (NM_001159910, exon 1 of 6)	409.0	NM_001159910	668158.0	Mm.482792	NM_001159910	ENSMUSG00000084883	Ccdc85c	EG668158|Gm265|Gm9010|hhy	coiled-coil domain containing 85C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109340028-3	chr3	109339518	109340518	+	854.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020505)	promoter-TSS (NM_020505)	-665.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	15.5	23.5	7.0	6.5	13.0	2.5
Merged-chr8-19785318-2	chr8	19784818	19785818	+	854.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270553, intron 6 of 9)	intron (NM_001270553, intron 6 of 9)	55742.0	NM_001039553	626415.0	Mm.425517	NM_001039553	ENSMUSG00000096265	4930467E23Rik	TSAP	RIKEN cDNA 4930467E23 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4034455-4	chr7	4033958	4034958	+	854.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302675, intron 2 of 6)	Lx5b|LINE|L1	28746.0	NM_001302677	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70005310-4	chr12	70004805	70005805	+	853.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-18303.0	NM_022028	64010.0	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101914284-4	chr13	101913730	101914730	+	853.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-146013.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63604446-3	chr9	63603945	63604945	+	853.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	1799.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83584273-3	chr6	83583761	83584761	+	853.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_078345, intron 7 of 7)	intron (NR_078345, intron 7 of 7)	-11757.0	NM_001362080	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11706903-3	chr2	11706411	11707411	+	853.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271499, intron 1 of 6)	intron (NM_001271499, intron 1 of 6)	1199.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-90240400-3	chr11	90239902	90240902	+	853.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9074.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82843746-4	chr18	82843258	82844258	+	853.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-12139.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-103578316-3	chr8	103577816	103578816	+	853.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-25483.0	NR_045730	71058.0	Mm.67707	NR_045730	ENSMUSG00000110336	4933400L20Rik	-	RIKEN cDNA 4933400L20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116672194-2	chr11	116671694	116672694	+	853.9166869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028569)	promoter-TSS (NR_028569)	-311.0	NR_028569	100216536.0		NR_028569	ENSMUSG00000065640	Snord1c	-	small nucleolar RNA, C/D box 1C	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85560127-4	chr8	85559639	85560639	+	853.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-4868.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26242931-5	chr17	26242451	26243451	+	853.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	1291.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-73200000-3	chr11	73199502	73200502	+	853.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031251)	promoter-TSS (NM_031251)	520.0	NM_029031	74637.0	Mm.200905	NM_029031	ENSMUSG00000005951	Shpk	4930431K22Rik|AI194947|AW260459|Carkl	sedoheptulokinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116614511-3	chr3	116613990	116614990	+	853.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030016)	promoter-TSS (NM_030016)	97.0	NM_030016	229780.0	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	17.0	46.5	25.5	10.0	28.0	26.5
Merged-chr8-122454568-4	chr8	122454032	122455032	+	853.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013914, exon 3 of 3)	3' UTR (NM_013914, exon 3 of 3)	-3210.0	NR_015497	319574.0	Mm.271989	NR_015497	ENSMUSG00000110656	Gm20735	-	predicted gene, 20735	ncRNA	0.0	0.0	6.5	1.5	1.5	0.5
Merged-chr8-69007227-4	chr8	69006737	69007737	+	853.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81499.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	98.0	205.5	122.5	64.5	154.0	107.5
Merged-chr11-75767713-4	chr11	75767194	75768194	+	853.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007873)	TTS (NM_007873)	-28115.0	NR_136933	102641247.0	Mm.411386	NR_136932		Gm12339	-	predicted gene 12339	ncRNA	0.5	5.5	2.5	13.5	12.5	3.5
Merged-chr8-70605009-3	chr8	70604455	70605455	+	853.8666380000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_133772, intron 1 of 16)	intron (NM_133772, intron 1 of 16)	3359.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	6.5	0.0	7.5	2.0	1.5	2.5
Merged-chr8-104115709-3	chr8	104115191	104116191	+	853.8666380000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 2 of 11)	MTE-int|LTR|ERVL-MaLR	-9818.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83090274-4	chr8	83089763	83090763	+	853.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177378, exon 7 of 7)	3' UTR (NM_177378, exon 7 of 7)	-75089.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	56.5	58.0	30.5	37.5	144.0	54.5
Merged-chr3-96055640-3	chr3	96055123	96056123	+	853.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013841, intron 2 of 14)	intron (NM_013841, intron 2 of 14)	2832.0	NM_013841	22365.0	Mm.263185	NM_013841	ENSMUSG00000015747	Vps45	AI462172|AW554165|mVps45	vacuolar protein sorting 45	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49653416-3	chr13	49652908	49653908	+	853.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025495)	promoter-TSS (NM_025495)	330.0	NR_073167	70930.0	Mm.258915	NM_001081350	ENSMUSG00000021392	Nol8	4921532D18Rik|5730412B09Rik	nucleolar protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-83533201-3	chr9	83532693	83533693	+	853.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15145.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170867020-4	chr1	170866509	170867509	+	853.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 1 of 15)	intron (NM_001081304, intron 1 of 15)	762.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70843605-3	chr9	70843120	70844120	+	853.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	B4A|SINE|B4	91188.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92695611-4	chr16	92695124	92696124	+	853.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001111021, exon 3 of 8)	exon (NM_001111021, exon 3 of 8)	1705.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-14348629-7	chr14	14348129	14349129	+	853.81427	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008369, intron 3 of 11)	intron (NM_008369, intron 3 of 11)	2134.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	4.0	1.5	1.0	2.5	5.5	2.0
Merged-chr13-28482056-4	chr13	28481559	28482559	+	853.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045054, intron 7 of 7)	intron (NR_045054, intron 7 of 7)	228814.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74437568-4	chr1	74437068	74438068	+	853.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001310662, exon 24 of 24)	3' UTR (NM_001310662, exon 24 of 24)	28184.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73358806-4	chr12	73358288	73359288	+	853.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50775.0	NR_046013	380765.0	Mm.490476	NR_046013	ENSMUSG00000056359	D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102534224-4	chr4	102533726	102534726	+	853.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-35834.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117842238-3	chr11	117841732	117842732	+	853.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger5|DNA|TcMar-Tigger	-7005.0	NM_001012273	11799.0	Mm.8552	NM_009689	ENSMUSG00000017716	Birc5	AAC-11|Api4|TIAP|survivin40	baculoviral IAP repeat-containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-18243193-6	chr3	18242699	18243699	+	853.772217	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007825, exon 1 of 6)	exon (NM_007825, exon 1 of 6)	139.0	NM_007825	13123.0	Mm.316000	NM_007825	ENSMUSG00000039519	Cyp7b1	AW261589|D3Ertd552e|hct-1	cytochrome P450, family 7, subfamily b, polypeptide 1	protein-coding	12.5	0.0	2.0	0.0	0.0	6.0
Merged-chr10-86781220-4	chr10	86780738	86781738	+	853.758301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175331, intron 1 of 13)	intron (NM_175331, intron 1 of 13)	2233.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108043179-2	chr3	108042679	108043679	+	853.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160411, intron 5 of 7)	intron (NM_001160411, intron 5 of 7)	1677.0	NM_026764	14865.0	Mm.31203	NM_026764	ENSMUSG00000027890	Gstm4	1110004G14Rik|GSTM7-7|Gstb-4|Gstb4	glutathione S-transferase, mu 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-16240178-4	chr14	16239665	16240665	+	853.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001359883, exon 3 of 3)	3' UTR (NM_001359883, exon 3 of 3)	3166.0	NM_001359883	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94470886-2	chr10	94470386	94471386	+	853.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	MTC|LTR|ERVL-MaLR	-43971.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116859148-4	chr3	116858650	116859650	+	853.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113478)	promoter-TSS (NM_001113478)	-417.0	NM_001113478	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-114438432-4	chr8	114437918	114438918	+	853.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1234.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135461067-6	chr5	135460648	135461648	+	853.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	-66602.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54639891-3	chr18	54639363	54640363	+	853.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045400)	TTS (NR_045400)	28119.0	NR_045400	328957.0	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA	0.5	1.0	0.0	10.0	5.0	0.5
Merged-chr11-75450915-5	chr11	75450468	75451468	+	853.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_138950, exon 1 of 10)	exon (NM_138950, exon 1 of 10)	3749.0	NM_138950	192652.0	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95297249-3	chr10	95296738	95297738	+	853.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	26471.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11240704-3	chr19	11240200	11241200	+	853.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045317, intron 1 of 2)	Lx|LINE|L1	25451.0	NM_007641	12482.0	Mm.4046	NM_007641	ENSMUSG00000024673	Ms4a1	AA960661|Cd20|Ly-44|Ms4a2	membrane-spanning 4-domains, subfamily A, member 1	protein-coding	1.0	0.0	0.0	0.0	4.0	0.0
Merged-chr12-112621572-2	chr12	112621072	112622072	+	853.714233	f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 1 of 12)	intron (NM_007421, intron 1 of 12)	1525.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-33606566-5	chr8	33606050	33607050	+	853.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017374, intron 1 of 6)	RMER6B|LTR|ERVK	6929.0	NM_017374	19053.0	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	0.0	3.0	7.5	4.5	7.5	4.5
Merged-chr3-95631063-4	chr3	95630549	95631549	+	853.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001026212)	TTS (NM_001026212)	6069.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	4.0	19.5	15.5	6.0	29.5	11.5
Merged-chr3-146811325-3	chr3	146810795	146811795	+	853.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011100, intron 1 of 9)	intron (NM_011100, intron 1 of 9)	1651.0	NM_011100	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46365142-4	chr18	46364650	46365650	+	853.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-53222.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-82918824-3	chr4	82918321	82919321	+	853.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_154662, intron 28 of 35)	intron (NR_154662, intron 28 of 35)	-33670.0	NM_009887	12622.0	Mm.6780	NM_009887	ENSMUSG00000038192	Cer1	Cerl|Cerl1|Cerr1|cer-1	cerberus 1, DAN family BMP antagonist	protein-coding	0.0	0.0	0.5	1.0	8.0	2.5
Merged-chr1-134416395-3	chr1	134415916	134416916	+	853.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001306069, intron 1 of 7)	intron (NM_001306069, intron 1 of 7)	752.0	NM_001306069	72674.0	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152582985-3	chr1	152582467	152583467	+	853.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	Arthur1|DNA|hAT-Tip100	42250.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31111068-3	chr6	31110583	31111583	+	853.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-47990.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53823831-3	chr4	53823323	53824323	+	853.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2222.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70897919-4	chr11	70897414	70898414	+	853.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019400, intron 5 of 17)	intron (NM_019400, intron 5 of 17)	53153.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117407746-3	chr8	117407257	117408257	+	853.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 3 of 20)	intron (NM_028941, intron 3 of 20)	-45266.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120510404-2	chr11	120509904	120510904	+	853.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18567.0	NM_013770	27376.0	Mm.3991	NM_013770	ENSMUSG00000025792	Slc25a10	Dic	solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-63865899-2	chr17	63865399	63866399	+	853.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 1 of 18)	intron (NM_001037997, intron 1 of 18)	1918.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32247811-2	chr4	32247315	32248315	+	853.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-169620.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.0	1.0	0.0	0.0	3.0	5.0
Merged-chr11-97229673-3	chr11	97229179	97230179	+	853.666626	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008942, intron 14 of 22)	A-rich|Low_complexity|Low_complexity	-41787.0	NM_008379	16211.0	Mm.251013	NM_008379	ENSMUSG00000001440	Kpnb1	AA409963|IPOB|Impnb	karyopherin (importin) beta 1	protein-coding	15.0	24.5	22.5	1.0	4.0	0.5
Merged-chr12-111458021-2	chr12	111457568	111458568	+	853.650024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15407.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-90527198-4	chr13	90526682	90527682	+	853.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	378173.0	NM_001145879	435376.0	Mm.292579	NM_001145879	ENSMUSG00000078958	Atp6ap1l	EG435376	ATPase, H+ transporting, lysosomal accessory protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117885546-4	chr10	117885053	117886053	+	853.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39579.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91087067-4	chr1	91086500	91087500	+	853.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 7 of 22)	intron (NM_008515, intron 7 of 22)	33556.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11110384-4	chr4	11109914	11110914	+	853.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13544.0	NR_151526	100503518.0	Mm.102270	NR_151526	ENSMUSG00000086765	Gm11827	-	predicted gene 11827	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-56792452-3	chr10	56791914	56792914	+	853.61908	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	360433.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-82362594-3	chr3	82362088	82363088	+	853.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356457, intron 3 of 13)	ORR1D2|LTR|ERVL-MaLR	4401.0	NM_001356457	213582.0	Mm.271269	NM_001081230	ENSMUSG00000033900	Map9	5033421J10Rik|5330427D05Rik|ASAP|Mtap9	microtubule-associated protein 9	protein-coding	6.5	31.5	7.5	8.5	2.5	7.5
Merged-chr2-104693438-5	chr2	104692860	104693860	+	853.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177190, intron 5 of 9)	intron (NM_177190, intron 5 of 9)	18802.0	NM_177190	320554.0	Mm.249065	NM_177190	ENSMUSG00000027175	Tcp11l1	C130096D04Rik	t-complex 11 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-82775444-2	chr6	82774944	82775944	+	853.583374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013820)	promoter-TSS (NM_013820)	-990.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-96406756-4	chr7	96406249	96407249	+	853.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 2 of 32)	intron (NM_011858, intron 2 of 32)	-64785.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	0.0	2.0	0.0	0.0	4.0	2.0
Merged-chr11-87212507-4	chr11	87212003	87213003	+	853.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197987, intron 22 of 23)	intron (NM_197987, intron 22 of 23)	85428.0	NM_197987	68729.0	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73451830-4	chr7	73451332	73452332	+	853.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081345, exon 33 of 39)	exon (NM_001081345, exon 33 of 39)	-76058.0	NR_040324	319783.0	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37365662-3	chr13	37365164	37366164	+	853.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010745, intron 1 of 4)	RMER15|LTR|ERVL	20319.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	11.5	4.0	6.0	9.0	4.5	4.0
Merged-chr2-151575732-3	chr2	151575247	151576247	+	853.56665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145535, intron 1 of 8)	intron (NM_145535, intron 1 of 8)	3124.0	NM_145535	228765.0	Mm.32068	NM_145535	ENSMUSG00000027456	Sdcbp2	-	syndecan binding protein (syntenin) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132947792-4	chr4	132947293	132948293	+	853.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25242.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	77.0	117.0	91.0	50.5	70.5	96.5
Merged-chr9-119156693-5	chr9	119156215	119157215	+	853.5618900000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146230, intron 1 of 11)	CpG-15481	378.0	NM_146230	235674.0	Mm.379402	NM_146230	ENSMUSG00000010651	Acaa1b	-	acetyl-Coenzyme A acyltransferase 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34605088-3	chr17	34604585	34605585	+	853.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163379)	promoter-TSS (NM_001163379)	-776.0	NM_001163379	55979.0	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-51756009-4	chr6	51755532	51756532	+	853.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	210739.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138955653-3	chr1	138955143	138956143	+	853.5277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8066.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-68074033-2	chr16	68073533	68074533	+	853.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS2|LTR|ERV1	-453125.0	NM_178721	239857.0	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	2.0	2.0
Merged-chr10-81530608-2	chr10	81530108	81531108	+	853.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010301, exon 7 of 7)	3' UTR (NM_010301, exon 7 of 7)	-6383.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150677960-2	chr2	150677460	150678460	+	853.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	-9720.0	NM_080575	68738.0	Mm.7044	NM_080575	ENSMUSG00000027452	Acss1	1110032O15Rik|AI788978|Acas2|Acas2l|AceCS2	acyl-CoA synthetase short-chain family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144828069-2	chr3	144827569	144828569	+	853.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_139148, exon 10 of 14)	exon (NM_139148, exon 10 of 14)	-8575.0	NM_030601	80797.0	Mm.20897	NM_030601	ENSMUSG00000028262	Clca3a2	Clca2	chloride channel accessory 3A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55895593-2	chr19	55895093	55896093	+	853.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001142924, exon 1 of 12)	5' UTR (NM_001142924, exon 1 of 12)	272.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62262694-2	chr10	62262194	62263194	+	853.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009314, intron 4 of 4)	intron (NM_009314, intron 4 of 4)	10256.0	NM_009314	21337.0	Mm.8054	NM_009314	ENSMUSG00000020081	Tacr2	Nk2r|Skr|Tac2r	tachykinin receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29382114-2	chr19	29381614	29382614	+	853.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 4 of 6)	intron (NM_021893, intron 4 of 6)	14676.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3083927-2	chr4	3083427	3084427	+	853.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88156.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-48788472-2	chr11	48787972	48788972	+	853.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2A|LINE|L1	-11888.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17718030-4	chr16	17717527	17718527	+	853.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285886, intron 1 of 16)	intron (NM_001285886, intron 1 of 16)	4873.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-108967165-3	chr7	108966635	108967635	+	853.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32720.0	NM_025344	66085.0	Mm.182962	NM_025344	ENSMUSG00000031029	Eif3f	0610037M02Rik|AA409853|Eif3s5	eukaryotic translation initiation factor 3, subunit F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135630717-3	chr5	135630209	135631209	+	853.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1945.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	0.0	0.0	0.0	2.0	0.0	1.0
Merged-chr7-142399019-4	chr7	142398491	142399491	+	853.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-11121.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-113101779-4	chr11	113101253	113102253	+	853.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015556, intron 1 of 2)	intron (NR_015556, intron 1 of 2)	100085.0	NR_015556	72386.0	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12943460-2	chr18	12942960	12943960	+	853.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1619.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167989319-2	chr2	167988819	167989819	+	853.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001080708, exon 13 of 22)	exon (NM_001080708, exon 13 of 22)	21274.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95421263-2	chr11	95420763	95421763	+	853.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359107, intron 1 of 9)	intron (NM_001359107, intron 1 of 9)	7180.0	NM_001359107	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119086578-2	chr9	119086078	119087078	+	853.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019676, intron 1 of 14)	intron (NM_019676, intron 1 of 14)	1683.0	NM_001293648	18799.0	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding	0.0	0.0	2.5	0.0	0.5	0.0
Merged-chr4-34387108-4	chr4	34386624	34387624	+	853.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-163491.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118121926-2	chr10	118121426	118122426	+	853.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19861.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0.5	0.0	0.0	4.5	0.0	0.0
Merged-chr6-39228815-4	chr6	39228312	39229312	+	853.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22039.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-71933815-2	chr12	71933315	71934315	+	853.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026102, intron 3 of 25)	intron (NM_026102, intron 3 of 25)	44272.0	NM_001286452	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-110788286-2	chr10	110787786	110788786	+	853.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178609)	TTS (NM_178609)	42847.0	NM_178609	52679.0	Mm.11747	NM_178609	ENSMUSG00000020185	E2f7	A630014C11Rik|D10Ertd739e|E2F-7	E2F transcription factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120678609-4	chr8	120678112	120679112	+	853.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10292.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45787157-2	chr19	45786657	45787657	+	853.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11C_MM|LTR|ERVK	-3604.0	NM_023799	76055.0	Mm.122725	NM_023799	ENSMUSG00000025220	Mgea5	Hy5|Ncoat|OGA	meningioma expressed antigen 5 (hyaluronidase)	protein-coding	1.5	1.5	2.5	1.5	2.0	2.0
Merged-chr2-84736913-2	chr2	84736413	84737413	+	853.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001005342, exon 2 of 5)	exon (NM_001005342, exon 2 of 5)	2709.0	NM_001005342	241525.0	Mm.486398	NM_001005342	ENSMUSG00000034059	Ypel4	-	yippee like 4	protein-coding	1.0	0.0	7.0	1.0	0.0	4.0
Merged-chr2-18687951-4	chr2	18687459	18688459	+	853.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10941.0	NM_007552	12151.0	Mm.289584	NM_007552	ENSMUSG00000026739	Bmi1	AW546694|Bmi-1|Pcgf4	Bmi1 polycomb ring finger oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55748649-2	chr14	55748149	55749149	+	853.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026403, intron 2 of 9)	intron (NM_026403, intron 2 of 9)	2956.0	NM_026403	67842.0	Mm.180338	NM_026403	ENSMUSG00000019297	Nop9	2610027L16Rik	NOP9 nucleolar protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80258275-2	chr15	80257771	80258771	+	853.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001287180)	TTS (NM_001287180)	3087.0	NM_009716	11911.0	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	9.5	68.5	28.0	24.5	35.0	48.0
Merged-chr16-97958132-2	chr16	97957632	97958632	+	853.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175428, intron 1 of 2)	intron (NM_175428, intron 1 of 2)	4490.0	NM_001081685	114565.0	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121629480-4	chr3	121628974	121629974	+	853.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14011.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81498709-2	chr10	81498209	81499209	+	853.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010102, exon 1 of 1)	exon (NM_010102, exon 1 of 1)	1428.0	NM_010102	13611.0	Mm.33065	NM_010102	ENSMUSG00000044199	S1pr4	Edg6|Lpc1|S1p4	sphingosine-1-phosphate receptor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134048943-2	chr1	134048443	134049443	+	853.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_021355)	TTS (NM_021355)	11689.0	NM_021355	14264.0	Mm.287146	NM_021355	ENSMUSG00000041559	Fmod	AI131919|AU041740|FM|SLRR2E	fibromodulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168227889-2	chr2	168227389	168228389	+	853.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132310, intron 1 of 11)	intron (NR_132310, intron 1 of 11)	2490.0	NM_010072	13480.0	Mm.422657	NM_010072	ENSMUSG00000078919	Dpm1	AI118379|AI194292	dolichol-phosphate (beta-D) mannosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132285016-4	chr2	132284425	132285425	+	853.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291040, intron 1 of 3)	intron (NM_001291040, intron 1 of 3)	-1014.0	NM_001291039	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46031547-2	chr17	46031047	46032047	+	853.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009505, exon 1 of 7)	exon (NM_009505, exon 1 of 7)	830.0	NM_001287058	22339.0	Mm.282184	NM_009505	ENSMUSG00000023951	Vegfa	Vegf|Vpf	vascular endothelial growth factor A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-136672000-5	chr3	136671554	136672554	+	853.4799800000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	1988.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.0	5.5	4.0	0.0	3.0	0.0
Merged-chr15-8625580-4	chr15	8625081	8626081	+	853.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85226.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-69493213-4	chr13	69492717	69493717	+	853.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40647.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	0.0	7.0	3.0	1.5	2.5	0.0
Merged-chr2-122454192-4	chr2	122453705	122454705	+	853.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356532, intron 10 of 17)	intron (NM_001356532, intron 10 of 17)	13385.0	NM_001356532	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	22.0	25.0	19.0	14.0	30.5	12.5
Merged-chr1-105922980-2	chr1	105922480	105923480	+	853.444458	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67302.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	12.5	10.5	8.0	9.5	5.0	13.0
Merged-chr9-61627997-3	chr9	61627479	61628479	+	853.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	255613.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47911809-4	chr6	47911294	47912294	+	853.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR85c|LTR|Gypsy?	-8774.0	NM_145576	232784.0	Mm.196782	NM_145576	ENSMUSG00000052763	Zfp212	Znf212|mKIAA3011	Zinc finger protein 212	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-60771258-4	chr14	60770751	60771751	+	853.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183175, intron 1 of 3)	L1MB2|LINE|L1	3117.0	NM_183175	239126.0	Mm.319636	NM_183175	ENSMUSG00000071347	C1qtnf9	9130217G22Rik|CTRP9|Ciqtnf9	C1q and tumor necrosis factor related protein 9	protein-coding	0.0	0.0	2.0	0.0	0.0	2.0
Merged-chr9-60744692-4	chr9	60744182	60745182	+	853.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31561.0	NM_026235	67557.0	Mm.44546	NM_026235	ENSMUSG00000034839	Larp6	5430431G03Rik|AI552438|Achn	La ribonucleoprotein domain family, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-59293498-4	chr7	59293001	59294001	+	853.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011668, intron 11 of 12)	intron (NM_011668, intron 11 of 12)	53923.0	NR_146600	102642160.0		NR_146600		Gm22496	-	predicted gene, 22496	snoRNA	0.0	1.5	0.0	0.5	5.0	9.5
Merged-chr7-122199475-4	chr7	122198954	122199954	+	853.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13223.0	NM_001316689	26918.0	Mm.20452	NM_012016	ENSMUSG00000030866	Ern2	Ern1|Ire1|Ire1b|ire1-beta|mIre1	endoplasmic reticulum (ER) to nucleus signalling 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-60472160-4	chr3	60471655	60472655	+	853.3916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253713)	promoter-TSS (NM_001253713)	-675.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	26.0	23.5	26.0	26.0	22.5	25.5
Merged-chr7-123205528-3	chr7	123205028	123206028	+	853.388855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9338.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117385046-4	chr11	117384536	117385536	+	853.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29353.0	NR_132097	105827746.0	Mm.388009	NR_132097	ENSMUSG00000086588	Gm11729	-	predicted gene 11729	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97793370-4	chr11	97792862	97793862	+	853.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-6203.0	NM_010688	16796.0	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	0.0	0.0	1.5	3.5	1.0	1.5
Merged-chr6-120915042-4	chr6	120914535	120915535	+	853.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007544, intron 1 of 5)	intron (NM_007544, intron 1 of 5)	1789.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	0.0	0.0	0.5	1.0	1.5	0.0
Merged-chr9-22366757-3	chr9	22366260	22367260	+	853.366699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028390, intron 8 of 23)	intron (NM_028390, intron 8 of 23)	22446.0	NM_028390	68743.0	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-3336122-2	chr18	3335622	3336622	+	853.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033457)	promoter-TSS (NR_033457)	-294.0	NR_033457	633947.0	Mm.461446	NR_033457	ENSMUSG00000097746	Gm6225	EG621440	predicted gene 6225	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118689206-2	chr9	118688706	118689706	+	853.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 13 of 27)	intron (NM_133721, intron 13 of 27)	-22486.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.5	3.0	18.5	2.5	3.0	8.0
Merged-chr7-105779120-4	chr7	105778629	105779629	+	853.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162943, intron 1 of 20)	MIRb|SINE|MIR	8421.0	NM_001162943	233651.0	Mm.334108	NM_001162943	ENSMUSG00000036862	Dchs1	3110041P15Rik|C130033F22Rik|CDH25|FIB1|Gm165|PCDH16	dachsous cadherin related 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121455729-3	chr14	121455224	121456224	+	853.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49530.0	NM_053079	56643.0	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	0.0	8.5	3.5	0.0	3.5	1.0
Merged-chr11-21009242-3	chr11	21008733	21009733	+	853.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82091.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	3.0	8.5	0.5	0.0	21.5	3.5
Merged-chr18-75174485-3	chr18	75173996	75174996	+	853.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027727, intron 13 of 16)	intron (NM_027727, intron 13 of 16)	122821.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-52760573-3	chr5	52760121	52761121	+	853.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028744, intron 7 of 9)	intron (NM_028744, intron 7 of 9)	-14788.0	NM_001309445	78796.0	Mm.266886	NM_030185	ENSMUSG00000029179	Zcchc4	4930449I23Rik	zinc finger, CCHC domain containing 4	protein-coding	8.0	5.5	21.5	37.5	27.5	49.0
Merged-chr16-20159162-3	chr16	20158664	20159664	+	853.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001145931, exon 6 of 8)	exon (NM_001145931, exon 6 of 8)	17070.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-100382667-3	chr9	100382167	100383167	+	853.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103806.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	0.0	0.0	0.0	2.0	9.5	0.5
Merged-chr18-34512065-3	chr18	34511578	34512578	+	853.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5255.0	NM_146084	225358.0	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	2.0	11.5	10.0	2.0	15.5	17.0
Merged-chr1-66861294-3	chr1	66860795	66861795	+	853.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007381, intron 1 of 10)	ORR1D2|LTR|ERVL-MaLR	2014.0	NM_007381	11363.0	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126801064-2	chr7	126800564	126801564	+	853.3333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177308)	promoter-TSS (NM_001177308)	-617.0	NM_001177308	11674.0	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38349216-3	chr6	38348703	38349703	+	853.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028864, intron 1 of 8)	B2_Mm1a|SINE|B2	5400.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152089343-2	chr2	152088843	152089843	+	853.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160410, intron 1 of 1)	intron (NM_001160410, intron 1 of 1)	7814.0	NM_001160410	545474.0	Mm.214317	NM_001160410	ENSMUSG00000060257	Scrt2	AW060659	scratch family zinc finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32601608-3	chr2	32601107	32602107	+	853.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025311, intron 1 of 4)	intron (NM_001025311, intron 1 of 4)	1898.0	NM_001025311	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182375351-3	chr1	182374859	182375859	+	853.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33753.0	NM_175127	67948.0	Mm.30737	NM_175127	ENSMUSG00000047539	Fbxo28	4833428J17Rik|5730505P19Rik|D1Ertd578e|Fbx28|mKIAA0483	F-box protein 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128858435-3	chr4	128857938	128858938	+	853.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25702.0	NM_178110	67525.0	Mm.30653	NM_178110	ENSMUSG00000041000	Trim62	6330414G21Rik|AI450348|Dear1	tripartite motif-containing 62	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-19377392-4	chr13	19376902	19377902	+	853.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347485, intron 1 of 7)	intron (NM_001347485, intron 1 of 7)	18411.0	NM_024270	76205.0	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	1.0	1.0	2.5	0.0	1.5	2.0
Merged-chr8-128358743-12	chr8	128358287	128359287	+	853.272217	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008737)	promoter-TSS (NM_008737)	-286.0	NM_001358959	18186.0	Mm.271745	NM_008737	ENSMUSG00000025810	Nrp1	C530029I03|NP-1|NPN-1|Npn1|Nrp	neuropilin 1	protein-coding	0.0	9.0	3.5	0.0	7.0	6.0
Merged-chr4-122995581-4	chr4	122995071	122996071	+	853.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303121)	promoter-TSS (NM_001303121)	-360.0	NM_001303121	16918.0	Mm.1055	NM_008506	ENSMUSG00000028654	Mycl	AW536278|L-myc|Lmyc-1|Lmyc1|Mycl1|bHLHe38	v-myc avian myelocytomatosis viral oncogene lung carcinoma derived	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17589835-4	chr6	17589314	17590314	+	853.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47196.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	2.5	18.5	12.5	4.5	6.0	5.0
Merged-chr17-64334743-2	chr17	64334243	64335243	+	853.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2860.0	NM_001025309	224938.0	Mm.489681	NM_144859	ENSMUSG00000024083	Pja2	AI447901|AL022700|Neurodap1|mKIAA0438	praja ring finger ubiquitin ligase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18026548-4	chr2	18026016	18027016	+	853.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028378)	promoter-TSS (NR_028378)	-733.0	NR_028378	100034739.0	Mm.401643	NR_028378		Gm17762	-	predicted gene, 17762	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86831772-2	chr12	86831272	86832272	+	853.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53042.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85686170-2	chr12	85685670	85686670	+	853.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016767)	promoter-TSS (NM_016767)	-550.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128756456-2	chr2	128755956	128756956	+	853.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 6 of 18)	intron (NM_008587, intron 6 of 18)	57541.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-118099791-2	chr4	118099251	118100251	+	853.25	f0_balb.idr|f1_balb.idr	intron (NM_001285520, intron 2 of 11)	ID_B1|SINE|B4	35195.0	NM_001285520	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	9.0	17.5	10.5	22.0	28.5	39.5
Merged-chr3-108885099-2	chr3	108884599	108885599	+	853.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001165965, intron 2 of 11)	intron (NM_001165965, intron 2 of 11)	4909.0	NM_177091	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	8.0	17.5	10.5	9.5	30.0	17.0
Merged-chr9-114978642-5	chr9	114978177	114979177	+	853.241699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-44690.0	NM_175380	333433.0	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	0.0	9.0	0.5	5.0	4.0	1.0
Merged-chr14-62120480-3	chr14	62119981	62120981	+	853.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	172498.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-8288931-3	chr6	8288451	8289451	+	853.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302354, intron 2 of 3)	intron (NM_001302354, intron 2 of 3)	29663.0	NM_001302353	100036521.0	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-192532452-3	chr1	192531968	192532968	+	853.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 11 of 11)	intron (NM_144881, intron 11 of 11)	238751.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34283146-3	chr17	34282624	34283624	+	853.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010378, intron 4 of 4)	intron (NM_010378, intron 4 of 4)	4647.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	42.5	78.0	10.0	3.0	36.0	18.5
Merged-chr10-96132347-4	chr10	96131827	96132827	+	853.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93880.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-17633056-4	chr14	17632548	17633548	+	853.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27912.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78441056-6	chr10	78440536	78441536	+	853.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172134, intron 10 of 10)	intron (NM_172134, intron 10 of 10)	4121.0	NR_105873	102466762.0		NR_105873	ENSMUSG00000098279	Mir6908	Gm27827|mmu-mir-6908	microRNA 6908	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88228776-4	chr10	88228294	88229294	+	853.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026070, intron 5 of 6)	intron (NM_026070, intron 5 of 6)	27697.0	NM_027487	67282.0	Mm.208465	NM_026070	ENSMUSG00000020056	Washc3	2900091E11Rik|5730495F03Rik|Ccdc53	WASH complex subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113724660-3	chr5	113724163	113725163	+	853.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033216, exon 1 of 3)	non-coding (NR_033216, exon 1 of 3)	109.0	NR_033216	381707.0	Mm.159016	NR_033216	ENSMUSG00000042184	1700069L16Rik	1700096P12Rik	RIKEN cDNA 1700069L16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62153504-7	chr15	62153024	62154024	+	853.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003368, intron 3 of 8)	intron (NR_003368, intron 3 of 8)	65927.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79554422-4	chr10	79553922	79554922	+	853.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316699, intron 1 of 13)	intron (NM_001316699, intron 1 of 13)	706.0	NM_001316699	70427.0	Mm.334193	NM_027422	ENSMUSG00000042570	Mier2	2700087H15Rik|mKIAA1193	MIER family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36723884-2	chr18	36723384	36724384	+	853.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12B|LTR|ERVK	2931.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97771611-4	chr11	97771116	97772116	+	853.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028156, exon 3 of 3)	exon (NM_028156, exon 3 of 3)	4302.0	NM_028156	72215.0	Mm.269049	NM_028156	ENSMUSG00000018543	1700001P01Rik	-	RIKEN cDNA 1700001P01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-98105462-4	chr6	98104976	98105976	+	853.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	113693.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-133549003-7	chr3	133548534	133549534	+	853.119019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4644.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103411085-4	chr11	103410684	103411684	+	853.116699	f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 1 of 11)	intron (NM_183034, intron 1 of 11)	1480.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	4.5	24.5	24.0	4.5	23.5	24.0
Merged-chr12-40657236-6	chr12	40656807	40657807	+	853.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 8 of 52)	intron (NM_172803, intron 8 of 52)	211254.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30344083-3	chr5	30343585	30344585	+	853.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033460, intron 2 of 15)	intron (NM_001033460, intron 2 of 15)	2422.0	NM_001033460	381738.0	Mm.389604	NM_001033460	ENSMUSG00000073102	Drc1	Ccdc164|Gm1060|b2b1654Clo	dynein regulatory complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134080268-5	chr1	134079785	134080785	+	853.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1130.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8442986-4	chr15	8442476	8443476	+	853.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201232, intron 1 of 45)	intron (NM_201232, intron 1 of 45)	1487.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22230715-4	chr9	22230195	22231195	+	853.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028420, intron 1 of 4)	intron (NR_028420, intron 1 of 4)	4983.0	NM_001164624	235047.0	Mm.290849	NM_172763	ENSMUSG00000057982	Zfp809	BB114266|C330026E23	zinc finger protein 809	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-136381035-4	chr7	136380523	136381523	+	853.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31608.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108868127-4	chr8	108867652	108868652	+	853.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 4 of 9)	intron (NM_007496, intron 4 of 9)	-68708.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	3.0	3.0	15.5	10.0	7.0	9.0
Merged-chr12-82265737-7	chr12	82265233	82266233	+	853.005981	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 2 of 23)	intron (NM_001167983, intron 2 of 23)	-45616.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91474966-3	chr16	91474385	91475385	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	9781.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-131882414-2	chr7	131881914	131882914	+	853.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84046.0	NM_173410	233919.0	Mm.208740	NM_173410	ENSMUSG00000040125	Gpr26	9630036A11Rik|A730021D22	G protein-coupled receptor 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105093989-2	chr1	105093489	105094489	+	853.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-262018.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102219622-2	chr11	102219122	102220122	+	853.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001284248, intron 3 of 28)	intron (NM_001284248, intron 3 of 28)	10528.0	NR_106179	102465892.0		NR_106179	ENSMUSG00000098863	Mir8101	Gm27705|mmu-mir-8101	microRNA 8101	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-81787546-4	chr17	81787056	81788056	+	853.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49169.0	NM_011406	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36707748-2	chr18	36707248	36708248	+	853.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11823.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	0.0	2.0	0.5	4.0	3.0	0.0
Merged-chr8-120490934-3	chr8	120490433	120491433	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	2067.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73458026-3	chr2	73457524	73458524	+	853.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	MLT1K|LTR|ERVL-MaLR	-4135.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35304774-2	chr17	35304274	35305274	+	853.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15773.0	NM_010390	15006.0	Mm.466882	NM_010390	ENSMUSG00000079507	H2-Q1	H-2Q1|Q1|Q1b|Q1d|Q1k|Qa-1|Qa1|Qed-1	histocompatibility 2, Q region locus 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75758916-2	chr10	75758416	75759416	+	853.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172549, intron 1 of 36)	ORR1B1|LTR|ERVL-MaLR	5441.0	NM_172549	104248.0	Mm.257404	NM_172549	ENSMUSG00000020196	Cabin1	A330070M20Rik|Cain|Ppp3in	calcineurin binding protein 1	protein-coding	3.0	1.5	0.0	3.0	1.5	0.0
Merged-chr6-92942153-1	chr6	92941653	92942653	+	853.0	f0_balb.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	1571.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25694791-3	chr2	25694307	25695307	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5267.0	NM_153558	227627.0	Mm.44630	NM_153558	ENSMUSG00000062061	Obp2a	BC027556|Lcn13	odorant binding protein 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-81519786-2	chr17	81519286	81520286	+	853.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	Lx6|LINE|L1	218601.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111132239-3	chr10	111131736	111132736	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-32566.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53463716-2	chr11	53463216	53464216	+	853.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001290789, exon 2 of 7)	exon (NM_001290789, exon 2 of 7)	6511.0	NM_027917	71774.0	Mm.274370	NM_027917	ENSMUSG00000018387	Shroom1	Apx|Shrm1	shroom family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52586726-2	chr13	52586226	52587226	+	853.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198977, intron 1 of 13)	intron (NM_001198977, intron 1 of 13)	3289.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122268729-3	chr5	122268226	122269226	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4266.0	NM_001039153	654470.0	Mm.28804	NM_001039153	ENSMUSG00000038593	Tctn1	G730031O11Rik|Tect1	tectonic family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92865075-3	chr16	92864594	92865594	+	853.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39020.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60786513-2	chr2	60786013	60787013	+	853.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 4 of 14)	intron (NM_001141932, intron 4 of 14)	-63910.0	NM_001159564	16420.0	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89282275-3	chr6	89281776	89282776	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131021, intron 1 of 3)	L1M4|LINE|L1	3449.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76052177-4	chr14	76051681	76052681	+	853.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-41316.0	NM_026816	68705.0	Mm.20415	NM_026816	ENSMUSG00000067995	Gtf2f2	1110031C13Rik|AI326315	general transcription factor IIF, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96829054-3	chr10	96828543	96829543	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-206725.0	NR_045358	75301.0	Mm.108650	NR_045358	ENSMUSG00000111924	4930556N09Rik	-	RIKEN cDNA 4930556N09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57517295-4	chr9	57516793	57517793	+	853.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3939.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-39948537-2	chr11	39948037	39949037	+	853.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-558312.0	NR_126439	75315.0	Mm.461295	NR_126439		4930553C11Rik	-	RIKEN cDNA 4930553C11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-151994997-3	chr2	151994500	151995500	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1511.0	NM_027172	69698.0	Mm.258262	NM_027172	ENSMUSG00000027463	Slc52a3	2310046K01Rik|RFT2	solute carrier protein family 52, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4680331-2	chr16	4679831	4680831	+	853.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030205)	promoter-TSS (NM_030205)	-611.0	NM_030205	78885.0	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5855912-2	chr13	5855412	5856412	+	853.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045891, exon 3 of 3)	non-coding (NR_045891, exon 3 of 3)	2180.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-53478164-3	chr17	53477624	53478624	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1110.0	NM_025887	271457.0	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14897321-3	chr8	14896806	14897806	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_012000, exon 3 of 3)	3' UTR (NM_012000, exon 3 of 3)	8770.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.5	4.5	0.0	0.5	5.0	0.0
Merged-chr19-47089838-3	chr19	47089340	47090340	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011053)	promoter-TSS (NM_011053)	785.0	NM_023211	66477.0	Mm.29722	NM_023211	ENSMUSG00000071528	Usmg5	2010301L15Rik	upregulated during skeletal muscle growth 5	protein-coding	10.5	25.5	47.5	16.0	21.5	25.5
Merged-chr2-71546768-2	chr2	71546268	71547268	+	853.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010054)	promoter-TSS (NM_010054)	-14.0	NM_010054	13392.0	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-58941074-1	chr3	58940574	58941574	+	853.0	f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-55862.0	NM_153386	229320.0	Mm.131502	NM_153384	ENSMUSG00000043850	Clrn1	A130002D11Rik|USH3|Ush3a|clarin-1	clarin 1	protein-coding	0.0	1.0	2.5	0.0	3.0	5.0
Merged-chr10-78068680-2	chr10	78068180	78069180	+	853.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015790)	promoter-TSS (NM_015790)	-688.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46140079-3	chr8	46139572	46140572	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15926.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24685727-2	chr17	24685227	24686227	+	853.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011522, exon 4 of 4)	3' UTR (NM_011522, exon 4 of 4)	4222.0	NM_011522	20974.0	Mm.26032	NM_011522	ENSMUSG00000007021	Syngr3	-	synaptogyrin 3	protein-coding	0.0	0.0	2.5	0.0	0.0	0.0
Merged-chr8-127826196-2	chr8	127825696	127826696	+	853.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	452029.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	11.0	2.0	13.0	11.0	2.0	12.5
Merged-chr10-19504099-3	chr10	19503615	19504615	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152785, intron 1 of 2)	intron (NR_152785, intron 1 of 2)	9472.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-110626591-3	chr13	110626051	110627051	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	231507.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111797733-3	chr13	111797235	111798235	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	11258.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	27.0	61.5	43.0	22.5	68.5	41.0
Merged-chr1-36591586-4	chr1	36591089	36592089	+	853.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 10 of 14)	intron (NM_001126046, intron 10 of 14)	1743.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73964980-3	chr12	73964531	73965531	+	853.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178392, intron 1 of 9)	intron (NM_178392, intron 1 of 9)	501.0	NM_178392	75627.0	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88412787-2	chr3	88412287	88413287	+	853.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178696, exon 4 of 4)	exon (NM_178696, exon 4 of 4)	-2390.0	NM_025928	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63844298-3	chr9	63843805	63844805	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86311.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118703936-2	chr7	118703446	118704446	+	853.0	f0_balb.idr|f0_c57.idr	intron (NM_019580, intron 1 of 5)	intron (NM_019580, intron 1 of 5)	1792.0	NM_019580	56209.0	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	391.5	875.0	711.5	214.5	483.5	372.0
Merged-chr13-12469747-3	chr13	12469239	12470239	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8001.0	NM_001291057	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-96483585-1	chr7	96483085	96484085	+	853.0	f1_balb.idr	intron (NM_011858, intron 3 of 32)	MLT1J|LTR|ERVL-MaLR	-141621.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	24.5	23.5	47.0	20.5	33.0	33.5
Merged-chr17-34457598-1	chr17	34457098	34458098	+	853.0	f1_balb.idr	intron (NM_001163855, intron 22 of 23)	intron (NM_001163855, intron 22 of 23)	18339.0	NM_030746	632126.0	Mm.484958	NM_030746	ENSMUSG00000058435	Btnl4	Btn3a3|EG632126|NG11	butyrophilin-like 4	protein-coding	0.0	0.0	4.0	5.0	4.0	7.0
Merged-chr8-105564027-3	chr8	105563526	105564526	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013477, intron 1 of 7)	intron (NM_013477, intron 1 of 7)	2038.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25665288-2	chr14	25664788	25665788	+	853.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001310666, exon 24 of 24)	3' UTR (NM_001310666, exon 24 of 24)	-28882.0	NM_134084	105675.0	Mm.41656	NM_134084	ENSMUSG00000021868	Ppif	AW457192|CyP-D|CyP-F|CypD|PPIase	peptidylprolyl isomerase F (cyclophilin F)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140831458-2	chr5	140830958	140831958	+	853.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1027.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55680830-3	chr14	55680327	55681327	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145705, exon 4 of 9)	exon (NM_145705, exon 4 of 9)	990.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80197502-2	chr7	80197002	80198002	+	853.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360135)	promoter-TSS (NM_001360135)	-939.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	8.0	28.0	26.0	8.0	28.0	27.5
Merged-chr17-80086650-2	chr17	80086150	80087150	+	853.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24382.0	NM_144802	72692.0	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116177619-2	chr4	116177119	116178119	+	853.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4247.0	NM_001099295	67323.0	Mm.45442	NM_001099295	ENSMUSG00000078593	1700042G07Rik	-	RIKEN cDNA 1700042G07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35686878-2	chr7	35686378	35687378	+	853.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178704, exon 19 of 19)	3' UTR (NM_178704, exon 19 of 19)	-39396.0	NM_019746	56330.0	Mm.371609	NM_019746	ENSMUSG00000030417	Pdcd5	2200003D22Rik|AA408513|Tfar19	programmed cell death 5	protein-coding	0.0	0.0	0.0	9.0	0.5	0.5
Merged-chr2-16359536-4	chr2	16359041	16360041	+	852.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026162, intron 1 of 13)	intron (NM_026162, intron 1 of 13)	3237.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-79519188-3	chr14	79518735	79519735	+	852.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	3561.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14988970-4	chr8	14988436	14989436	+	852.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037736, intron 25 of 27)	intron (NM_001037736, intron 25 of 27)	-22089.0	NM_029116	74901.0	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	0.0	2.0	3.0	13.5	10.5	5.0
Merged-chr2-121309255-4	chr2	121308761	121309761	+	852.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_032393, exon 7 of 7)	3' UTR (NM_032393, exon 7 of 7)	13807.0	NM_001173506	17754.0	Mm.36501	NM_032393	ENSMUSG00000027254	Map1a	6330416M19Rik|AI853608|Mtap-1|Mtap1|Mtap1a|moth1	microtubule-associated protein 1 A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25034760-4	chr8	25034261	25035261	+	852.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081187, intron 3 of 8)	B2_Mm2|SINE|B2	4201.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	7.5	0.0	1.0	0.0	0.0	1.5
Merged-chr9-3016101-3	chr9	3015666	3016666	+	852.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	22577.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128763732-3	chr2	128763179	128764179	+	852.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 8 of 18)	intron (NM_008587, intron 8 of 18)	-54624.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	12.0	22.0	10.5	8.5	39.5	23.0
Merged-chr4-118992014-4	chr4	118991524	118992524	+	852.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30057.0	NM_133892	100470.0	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	0.0	7.0	0.0	5.5	1.0	1.5
Merged-chr6-47841036-4	chr6	47840529	47841529	+	852.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027477, intron 2 of 5)	intron (NM_027477, intron 2 of 5)	5368.0	NM_173034	272347.0	Mm.169059	NM_027477	ENSMUSG00000062519	Zfp398	5730513I23Rik	zinc finger protein 398	protein-coding	13.0	40.5	17.5	9.5	29.5	23.0
Merged-chr18-4343501-4	chr18	4342884	4343884	+	852.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 2 of 7)	intron (NM_007746, intron 2 of 7)	9569.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172306369-4	chr1	172305861	172306861	+	852.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6006.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	4.5	7.5	15.0	25.5	13.5	14.0
Merged-chr3-75297631-4	chr3	75297165	75298165	+	852.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27587.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151953733-4	chr1	151953243	151954243	+	852.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 3 of 5)	intron (NM_197990, intron 3 of 5)	136577.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95200645-4	chr4	95200141	95201141	+	852.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-148419.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25134632-2	chr17	25134132	25135132	+	852.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011930, intron 1 of 24)	intron (NM_011930, intron 1 of 24)	1241.0	NM_011930	26373.0	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	4.0	24.0	7.5	0.0	3.0	11.0
Merged-chr7-144470173-2	chr7	144469673	144470673	+	852.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357116, intron 1 of 15)	intron (NM_001357116, intron 1 of 15)	762.0	NM_007803	13043.0	Mm.205601	NM_007803	ENSMUSG00000031078	Cttn	1110020L01Rik|Ems1	cortactin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27310352-2	chr7	27309852	27310852	+	852.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113549, intron 23 of 29)	intron (NM_001113549, intron 23 of 29)	23296.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115487016-3	chr8	115486529	115487529	+	852.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57E1|LTR|ERV1	219865.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45264447-3	chr9	45263901	45264901	+	852.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008348, exon 5 of 7)	exon (NM_008348, exon 5 of 7)	2306.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35449875-4	chr2	35449366	35450366	+	852.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	11583.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167948075-3	chr2	167947547	167948547	+	852.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	15720.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41714424-3	chr4	41713911	41714911	+	852.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027278)	promoter-TSS (NM_027278)	-894.0	NM_027278	69961.0	Mm.425182	NM_027278	ENSMUSG00000036114	Rpp25l	2810432D09Rik|AW987258|Rppl25	ribonuclease P/MRP 25 subunit-like	protein-coding	0.0	2.0	0.5	6.5	5.0	5.5
Merged-chr5-121844716-2	chr5	121844216	121845216	+	852.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-4281.0	NM_175474	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	0.0	4.0	4.0	0.0	4.0	4.0
Merged-chr9-75582297-3	chr9	75581836	75582836	+	852.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038710, intron 6 of 9)	intron (NM_001038710, intron 6 of 9)	16797.0	NM_001038710	50876.0	Mm.291880	NM_016711	ENSMUSG00000032186	Tmod2	N-Tmod|NTMOD	tropomodulin 2	protein-coding	0.0	0.0	0.0	3.5	0.0	0.0
Merged-chr9-59680162-4	chr9	59679686	59680686	+	852.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011099)	TTS (NM_011099)	23818.0	NM_011099	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4521102-4	chr11	4520601	4521601	+	852.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028860, intron 4 of 17)	intron (NM_028860, intron 4 of 17)	73714.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-91221726-3	chr13	91221221	91222221	+	852.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025770, intron 1 of 7)	intron (NM_025770, intron 1 of 7)	2266.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101681725-2	chr13	101681225	101682225	+	852.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001077495, exon 16 of 16)	3' UTR (NM_001077495, exon 16 of 16)	10905.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-97630257-4	chr1	97629761	97630761	+	852.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31415.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36162540-4	chr17	36162037	36163037	+	852.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_033517)	TTS (NR_033517)	6000.0	NM_001081032	667977.0	Mm.441651	NM_001081032	ENSMUSG00000073402	Gm8909	EG667977|H2-Tw5l|H2-gs17	predicted gene 8909	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41263498-4	chr13	41262996	41263996	+	852.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001135577, intron 1 of 1)	intron (NM_001135577, intron 1 of 1)	13652.0	NM_001135577	108934.0	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86906401-4	chr17	86905960	86906960	+	852.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10888.0	NM_001277980	78469.0	Mm.67234	NM_030104	ENSMUSG00000037689	Tmem247	1700090G07Rik	transmembrane protein 247	protein-coding	1.0	0.5	0.0	0.0	0.0	2.0
Merged-chr10-80100706-2	chr10	80100206	80101206	+	852.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359637, intron 1 of 3)	intron (NM_001359637, intron 1 of 3)	481.0	NM_001359635	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167590734-2	chr2	167590234	167591234	+	852.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41271.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-15284147-4	chr3	15283653	15284653	+	852.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48149.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	26.0	37.0	22.0	25.0	25.0	25.5
Merged-chr11-115177975-4	chr11	115177462	115178462	+	852.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012030, intron 3 of 5)	intron (NM_012030, intron 3 of 5)	9354.0	NM_025400	66176.0	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	3.5	20.0	6.0	3.5	13.5	9.0
Merged-chr8-125733612-4	chr8	125733113	125734113	+	852.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310688)	promoter-TSS (NM_001310688)	-590.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-34114882-4	chr16	34114413	34115413	+	852.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 34 of 59)	intron (NM_177357, intron 34 of 59)	-147875.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91596541-4	chr16	91596000	91597000	+	852.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030018, intron 1 of 6)	intron (NM_030018, intron 1 of 6)	1180.0	NM_030018	77975.0	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59352348-7	chr4	59351907	59352907	+	852.738098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 10 of 16)	intron (NM_001163288, intron 10 of 16)	86226.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	36.0	45.5	58.5	44.0	76.5	57.0
Merged-chr13-33952227-4	chr13	33951714	33952714	+	852.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040707, intron 1 of 4)	intron (NR_040707, intron 1 of 4)	-12445.0	NM_001163239	18105.0	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	N-ribosyldihydronicotinamide quinone reductase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20099303-5	chr16	20098807	20099807	+	852.7000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029436, intron 1 of 7)	intron (NM_029436, intron 1 of 7)	1753.0	NM_029436	75785.0	Mm.392450	NM_029436	ENSMUSG00000062901	Klhl24	1110046J11Rik|4930429H24Rik|6530402O20Rik|C85082	kelch-like 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-65371136-4	chr16	65370649	65371649	+	852.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-149480.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-39644660-4	chr5	39644105	39645105	+	852.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010474)	promoter-TSS (NM_010474)	26.0	NM_010474	15476.0	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr6-72552272-4	chr6	72551759	72552759	+	852.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271395, intron 1 of 9)	MER31A|LTR|ERV1	2612.0	NM_001271395	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50069235-4	chr16	50068715	50069715	+	852.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045935, intron 1 of 3)	intron (NR_045935, intron 1 of 3)	3637.0	NR_045935	224180.0	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66282815-4	chr14	66282308	66283308	+	852.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1756.0	NM_001162365	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	3.5	2.5	7.5	7.0	6.0	4.5
Merged-chr6-52158830-3	chr6	52158363	52159363	+	852.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311118)	promoter-TSS (NM_001311118)	339.0	NR_131181	105242658.0	Mm.372521	NR_131181	ENSMUSG00000087658	Hotairm1	Gm15051|Hoxaas1	Hoxa transcript antisense RNA, myeloid-specific 1	ncRNA	1.0	14.5	12.0	1.0	7.0	5.5
Merged-chr10-68279611-3	chr10	68279124	68280124	+	852.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023598)	promoter-TSS (NM_023598)	-898.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	99.5	181.5	145.0	120.0	238.0	127.0
Merged-chr9-86513579-3	chr9	86513101	86514101	+	852.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177208, intron 16 of 38)	intron (NM_177208, intron 16 of 38)	46447.0	NM_177208	320615.0	Mm.245500	NM_177208	ENSMUSG00000034973	Dopey1	B130005I07Rik|BC035275|C130028L17|D9Ertd809e	dopey family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-84064821-3	chr4	84064321	84065321	+	852.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19942.0	NR_130998	78238.0	Mm.243903	NR_130998	ENSMUSG00000085217	6030471H07Rik	-	RIKEN cDNA 6030471H07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74390110-3	chr1	74389591	74390591	+	852.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1518.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114792146-3	chr11	114791650	114792650	+	852.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028055, exon 3 of 3)	exon (NM_028055, exon 3 of 3)	3742.0	NM_028055	72014.0	Mm.38347	NM_028055	ENSMUSG00000000202	Btbd17	1500005I02Rik|Tango10a	BTB (POZ) domain containing 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149143772-3	chr4	149143283	149144283	+	852.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6183.0	NM_027263	69928.0	Mm.260893	NM_027263	ENSMUSG00000073705	Cenps	2610040C18Rik|2810407L01Rik|Apitd1|CENP-S	centromere protein S	protein-coding	7.0	2.0	7.0	7.0	22.0	15.5
Merged-chr16-38789174-4	chr16	38788668	38789668	+	852.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178924, intron 1 of 7)	intron (NM_178924, intron 1 of 7)	11035.0	NM_178924	22268.0	Mm.130793	NM_178924	ENSMUSG00000049436	Upk1b	AI413235|Tspan20|UPIb|Upk1	uroplakin 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150388769-3	chr4	150388277	150389277	+	852.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 1 of 22)	intron (NM_001085492, intron 1 of 22)	106861.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	0.0	0.0	0.0	0.0	3.5	0.0
Merged-chr9-99517653-4	chr9	99517124	99518124	+	852.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001166138)	TTS (NM_001166138)	47203.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128745981-2	chr7	128745476	128746476	+	852.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029982, intron 1 of 18)	intron (NM_001029982, intron 1 of 18)	1106.0	NM_001029982	207352.0	Mm.297105	NM_001029982	ENSMUSG00000055319	Sec23ip	D7Ertd373e|p125	Sec23 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34005375-3	chr1	34004897	34005897	+	852.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276764, intron 3 of 102)	intron (NM_001276764, intron 3 of 102)	-6428.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56720094-3	chr18	56719587	56720587	+	852.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010721, intron 1 of 10)	intron (NM_010721, intron 1 of 10)	12274.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83852221-4	chr7	83851788	83852788	+	852.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32053.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-72594119-2	chr14	72593625	72594625	+	852.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 4 of 25)	intron (NM_207636, intron 4 of 25)	115878.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	1.5	17.0	3.0	0.0	12.0	2.5
Merged-chr4-123342379-2	chr4	123341879	123342879	+	852.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007558, intron 1 of 6)	CpG	873.0	NM_001256019	12163.0	Mm.439749	NM_007558	ENSMUSG00000032726	Bmp8a	Bmp7r1|OP-2|OP2	bone morphogenetic protein 8a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-103184030-3	chr9	103183531	103184531	+	852.64447	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173781, exon 8 of 8)	3' UTR (NM_173781, exon 8 of 8)	18034.0	NM_009275	20818.0	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62096829-4	chr15	62096332	62097332	+	852.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	57575.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4194877-4	chr11	4194410	4195410	+	852.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	8077.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-21958278-4	chr6	21957778	21958778	+	852.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311061, intron 4 of 11)	intron (NM_001311061, intron 4 of 11)	8663.0	NM_023626	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131524014-4	chr1	131523506	131524506	+	852.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	3355.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	6.0	16.0	14.0	5.0	14.5	6.0
Merged-chr1-93174583-4	chr1	93174059	93175059	+	852.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310428, intron 1 of 31)	intron (NM_001310428, intron 1 of 31)	6136.0	NM_001310428	381284.0	Mm.193346	NM_001310428	ENSMUSG00000084989	Crocc2	E030010N08Rik|Gm976	ciliary rootlet coiled-coil, rootletin family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44891733-4	chr7	44891187	44892187	+	852.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331206, intron 3 of 16)	intron (NM_001331206, intron 3 of 16)	737.0	NM_001331208	75613.0	Mm.157778	NM_029365	ENSMUSG00000002968	Med25	2610034E13Rik|2610529E18Rik|ESTM2	mediator complex subunit 25	protein-coding	8.5	14.5	5.5	6.5	9.0	7.5
Merged-chr4-24899389-4	chr4	24898891	24899891	+	852.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026742, intron 2 of 2)	L2a|LINE|L2	1308.0	NM_026742	68493.0	Mm.204831	NM_026742	ENSMUSG00000028261	Ndufaf4	1110007M04Rik|3000003G13Rik|AW214064	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	protein-coding	0.5	4.0	1.0	0.5	3.0	2.5
Merged-chr6-100211867-4	chr6	100211351	100212351	+	852.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	75507.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89430890-4	chr15	89430386	89431386	+	852.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_004843)	promoter-TSS (NR_004843)	-959.0	NR_037153	12651.0	Mm.485045	NM_007692	ENSMUSG00000022617	Chkb	Chetk|Chkl|Ck|Ck/Ek|Ck/Ek-beta|Ckb|Ckekb|Ek	choline kinase beta	protein-coding	5.0	28.5	8.0	5.0	28.5	8.0
Merged-chr9-85577970-4	chr9	85577453	85578453	+	852.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	171381.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	0.5	2.0	0.5	10.5	0.0	7.0
Merged-chr5-73564663-3	chr5	73564136	73565136	+	852.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	67785.0	NM_153568	231296.0	Mm.168948	NM_153568	ENSMUSG00000067206	Lrrc66	-	leucine rich repeat containing 66	protein-coding	2.0	3.0	0.0	5.5	1.0	1.0
Merged-chr5-36573435-3	chr5	36572937	36573937	+	852.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113362, intron 2 of 14)	intron (NM_001113362, intron 2 of 14)	8960.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	18.0	33.0	62.0	16.0	36.5	49.0
Merged-chr3-87616241-3	chr3	87615757	87616757	+	852.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1302.0	NM_001360197	213498.0	Mm.287267	NM_001003912	ENSMUSG00000041977	Arhgef11	PDZ-RhoGEF|Prg|RhoGEF|mKIAA0380	Rho guanine nucleotide exchange factor (GEF) 11	protein-coding	5.5	8.0	9.5	9.0	22.0	17.0
Merged-chr8-22963267-4	chr8	22962768	22963768	+	852.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11568.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	8.5	20.0	6.0	0.0	4.5	1.5
Merged-chr4-43524353-4	chr4	43523860	43524860	+	852.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009416)	promoter-TSS (NM_009416)	-806.0	NM_001277875	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	6.5	5.0	8.5	4.5	5.5	6.0
Merged-chr13-33074283-2	chr13	33073786	33074786	+	852.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9817.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	2.5	0.5	5.0	0.0	0.5	2.5
Merged-chr6-37448101-4	chr6	37447589	37448589	+	852.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5941.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-68795807-3	chr7	68795310	68796310	+	852.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46572.0	NM_025549	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133085437-4	chr4	133084996	133085996	+	852.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-45137.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	2.0	3.5	4.0	2.5	2.0	0.0
Merged-chr2-167696810-3	chr2	167696409	167697409	+	852.5793460000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_110334, exon 2 of 2)	non-coding (NR_110334, exon 2 of 2)	5732.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75791334-3	chr15	75790828	75791828	+	852.577759	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172121, intron 4 of 11)	intron (NM_172121, intron 4 of 11)	-43406.0	NM_194350	378435.0	Mm.309589	NM_194350	ENSMUSG00000047591	Mafa	RIPE3b1	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102605954-3	chr4	102605439	102606439	+	852.572205	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001177980, exon 10 of 10)	3' UTR (NM_001177980, exon 10 of 10)	16096.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	2.0	3.0	5.0	18.0	45.0	20.0
Merged-chr1-184908741-3	chr1	184908297	184909297	+	852.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145515, intron 13 of 17)	intron (NM_145515, intron 13 of 17)	-25761.0	NM_178692	226777.0	Mm.169542	NM_178692	ENSMUSG00000039349	C130074G19Rik	-	RIKEN cDNA C130074G19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-137577376-3	chr2	137576883	137577883	+	852.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-460863.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-70353136-5	chr16	70352579	70353579	+	852.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 1 of 15)	(GA)n|Simple_repeat|Simple_repeat	39130.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	12.0	12.0	10.0	4.0	6.5	0.0
Merged-chr7-102507012-4	chr7	102506513	102507513	+	852.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12240.0	NM_146840	258837.0	Mm.377714	NM_146840	ENSMUSG00000044824	Olfr545	MOR42-1|S50	olfactory receptor 545	protein-coding	2.5	0.0	0.0	2.5	0.0	0.0
Merged-chr6-5496284-6	chr6	5495795	5496795	+	852.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013743)	promoter-TSS (NM_013743)	-17.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-21065214-4	chr2	21064709	21065709	+	852.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96335.0	NR_033225	433408.0	Mm.386941	NR_033225		Gm13375	-	predicted gene 13375	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103906796-4	chr2	103906292	103907292	+	852.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131913, intron 3 of 6)	intron (NR_131913, intron 3 of 6)	5841.0	NR_131913	100996933.0	Mm.394449	NR_131913		Lincred1	-	long intergenic non-protein coding RNA of erythroid differentiation 1	ncRNA	0.0	7.5	0.0	2.5	4.5	6.0
Merged-chr15-81696746-2	chr15	81696246	81697246	+	852.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164320, intron 1 of 5)	intron (NM_001164320, intron 1 of 5)	541.0	NM_001164320	214685.0	Mm.393287	NM_001164320	ENSMUSG00000063765	Chadl	AY100452|D930017K21Rik	chondroadherin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119754378-2	chr8	119753878	119754878	+	852.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026922, intron 24 of 26)	intron (NM_026922, intron 24 of 26)	24038.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94382683-2	chr13	94382179	94383179	+	852.5	f0_balb.idr|f0_c57.idr	intron (NM_009680, intron 1 of 26)	intron (NM_009680, intron 1 of 26)	23719.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-185294075-2	chr1	185293575	185294575	+	852.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198653, intron 18 of 22)	MTE-int|LTR|ERVL-MaLR	-19244.0	NR_029580	387189.0		NR_029580	ENSMUSG00000065581	Mir194-1	Mirn194|Mirn194-1|miR-194|mir-194-1	microRNA 194-1	ncRNA	3.5	8.0	2.5	0.5	3.0	1.0
Merged-chr9-106366788-2	chr9	106366288	106367288	+	852.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1844.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	2.0	6.0	12.0	2.0	6.5	19.0
Merged-chr10-40527775-2	chr10	40527275	40528275	+	852.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42587.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4151806-2	chr7	4151306	4152306	+	852.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021454, intron 2 of 2)	intron (NM_021454, intron 2 of 2)	-1934.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146652902-2	chr3	146652402	146653402	+	852.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1585.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-167283855-2	chr1	167283355	167284355	+	852.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030724, intron 1 of 6)	CpG	1272.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167918475-2	chr2	167917975	167918975	+	852.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13852.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3802340-2	chr4	3801840	3802840	+	852.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	33315.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0.0	0.0	1.0	1.0	3.0	0.0
Merged-chr10-20348621-3	chr10	20348113	20349113	+	852.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027930, intron 2 of 6)	intron (NM_027930, intron 2 of 6)	794.0	NM_027930	71804.0	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	34.0	42.0	42.0	5.5	24.0	13.0
Merged-chr4-155489433-4	chr4	155488951	155489951	+	852.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1910.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84744021-2	chr8	84743521	84744521	+	852.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081982, intron 2 of 9)	intron (NM_001081982, intron 2 of 9)	30348.0	NM_001081981	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	0.0	15.5	5.5	1.0	11.5	4.0
Merged-chr1-127207262-5	chr1	127206648	127207648	+	852.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	2162.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	15.0	47.0	34.0	6.0	33.5	19.5
Merged-chr5-16832411-2	chr5	16831911	16832911	+	852.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	278510.0	NM_001289461	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-36319659-3	chr3	36319125	36320125	+	852.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-97350.0	NM_198192	229214.0	Mm.330975	NM_198192	ENSMUSG00000058400	Qrfpr	AQ27|Gpr103|SP9155	pyroglutamylated RFamide peptide receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89416424-2	chr3	89415924	89416924	+	852.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016904, intron 1 of 2)	intron (NM_016904, intron 1 of 2)	1867.0	NM_016904	54124.0	Mm.3049	NM_016904	ENSMUSG00000028044	Cks1b	2410005G18Rik|2610005D03Rik|AA407784|Cks1|sid1334	CDC28 protein kinase 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-33892960-4	chr1	33892444	33893444	+	852.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 1 of 6)	intron (NM_177235, intron 1 of 6)	14677.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57920358-2	chr15	57919858	57920858	+	852.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081396, intron 3 of 20)	intron (NM_001081396, intron 3 of 20)	8159.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-27948876-2	chr6	27948376	27949376	+	852.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361125, intron 3 of 10)	intron (NM_001361125, intron 3 of 10)	-12126.0	NR_030420	735266.0		NR_030420	ENSMUSG00000076067	Mir592	Mirn592|mir-592|mmu-mir-592	microRNA 592	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-48653870-2	chr13	48653370	48654370	+	852.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9166.0	NM_007526	12022.0	Mm.42241	NM_007526	ENSMUSG00000021381	Barx1	-	BarH-like homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17531059-2	chr12	17530580	17531580	+	852.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13793.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	0.0	0.0	5.0	5.0	8.5	1.5
Merged-chr11-95845712-2	chr11	95845212	95846212	+	852.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001284397)	TTS (NM_001284397)	2467.0	NM_001284397	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15383124-2	chr17	15382624	15383624	+	852.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7301.0	NM_007865	13388.0	Mm.4875	NM_007865	ENSMUSG00000014773	Dll1	Delta1	delta like canonical Notch ligand 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118783387-2	chr9	118782887	118783887	+	852.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 2 of 13)	intron (NM_001113514, intron 2 of 13)	71695.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60746228-2	chr18	60745728	60746728	+	852.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	518.0	NM_001348101	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0.0	9.0	6.0	0.0	9.0	5.5
Merged-chr10-127586378-3	chr10	127585884	127586884	+	852.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 15 of 88)	intron (NM_008512, intron 15 of 88)	34764.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	1.5	6.0	4.0	3.0	9.5	6.5
Merged-chr1-157043551-1	chr1	157043051	157044051	+	852.5	f0_balb.idr	Intergenic	Intergenic	65099.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	7.0	39.5	17.5	25.5	34.0	19.5
Merged-chr4-119083011-4	chr4	119082518	119083518	+	852.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13907.0	NR_131914	433751.0	Mm.224312	NR_131914	ENSMUSG00000066060	Gm12866	-	predicted gene 12866	ncRNA	2.0	2.0	1.0	0.0	0.0	3.0
Merged-chr6-140763766-4	chr6	140763261	140764261	+	852.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136876.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-97939055-4	chr13	97938558	97939558	+	852.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012026, intron 31 of 35)	intron (NM_012026, intron 31 of 35)	187946.0	NR_152263	111365222.0	Mm.440079	NR_152263		Eyelinc18	-	uncharacterized EyeLinc18	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9140561-3	chr19	9140085	9141085	+	852.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-5019.0	NM_025610	66514.0	Mm.272847	NM_025610	ENSMUSG00000024654	Asrgl1	2410004D18Rik|ALP|ALP1|AU040643|AW060375	asparaginase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-89376297-3	chr13	89375782	89376782	+	852.422241	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-164354.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	1.5	9.5	2.0	2.5	0.5	0.0
Merged-chr10-80960985-4	chr10	80960471	80961471	+	852.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	30880.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61104452-4	chr11	61103933	61104933	+	852.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER30|DNA|hAT-Charlie	-36402.0	NM_021349	57916.0	Mm.265915	NM_021349	ENSMUSG00000010142	Tnfrsf13b	1200009E08Rik|Taci	tumor necrosis factor receptor superfamily, member 13b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163766407-4	chr2	163765862	163766862	+	852.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16123.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	4.0	10.5	10.5	18.5	42.5	29.0
Merged-chr13-30625335-4	chr13	30624821	30625821	+	852.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10278.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123696214-2	chr5	123695714	123696714	+	852.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-11853.0	NM_001359222	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	0.0	0.5	0.0	0.0	0.0	1.5
Merged-chr9-114957181-4	chr9	114956684	114957684	+	852.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23197.0	NM_175380	333433.0	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	2.0	1.0	0.0	0.0	1.0	1.5
Merged-chr9-44498615-3	chr9	44498123	44499123	+	852.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030256)	promoter-TSS (NM_030256)	-513.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0.0	0.0	0.0	5.0	0.0	0.0
Merged-chr14-61678300-4	chr14	61677796	61678796	+	852.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	4077.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87331294-4	chr17	87330788	87331788	+	852.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 10 of 19)	intron (NM_028639, intron 10 of 19)	48402.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-38206094-4	chr3	38205600	38206600	+	852.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040541, intron 2 of 2)	intron (NR_040541, intron 2 of 2)	2019.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-32529146-2	chr6	32528646	32529646	+	852.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 1 of 31)	intron (NM_175750, intron 1 of 31)	18005.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67434482-4	chr15	67434003	67435003	+	852.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	207734.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94537278-4	chr10	94536771	94537771	+	852.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172051, intron 1 of 3)	B2_Mm1t|SINE|B2	-13601.0	NM_001359761	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44002258-4	chr16	44001762	44002762	+	852.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359085, intron 8 of 16)	intron (NM_001359085, intron 8 of 16)	-11590.0	NR_037302	100499519.0		NR_037302	ENSMUSG00000093912	Mir3470b	mmu-mir-3470b	microRNA 3470b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122756069-2	chr6	122755569	122756569	+	852.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13324.0	NM_011401	20527.0	Mm.395108	NM_011401	ENSMUSG00000003153	Slc2a3	AA408729|AL023014|AL024341|AU040424|C78366|Glut-3|Glut3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80998973-2	chr10	80998473	80999473	+	852.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010319, intron 1 of 3)	intron (NM_010319, intron 1 of 3)	2392.0	NM_001038655	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9369560-2	chr13	9369060	9370060	+	852.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	93035.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10981862-2	chr16	10981362	10982362	+	852.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	B3A|SINE|B2	11259.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116614699-2	chr11	116614199	116615199	+	852.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	RMER1C|Other|Other	9553.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-53448434-1	chr6	53447934	53448934	+	852.3333130000001	f0_balb.idr	intron (NM_001327821, intron 5 of 10)	intron (NM_001327821, intron 5 of 10)	-124940.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-5146841-3	chr16	5146329	5147329	+	852.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127725)	promoter-TSS (NM_001127725)	-280.0	NM_001127725	665119.0	Mm.102072	NM_001127725	ENSMUSG00000091712	Sec14l5	-	SEC14-like lipid binding 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124859601-3	chr5	124859104	124860104	+	852.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144819, intron 1 of 3)	intron (NM_144819, intron 1 of 3)	2617.0	NM_144819	215707.0	Mm.389693	NM_144819	ENSMUSG00000037979	Ccdc92	AW050178|D5Bwg0834e	coiled-coil domain containing 92	protein-coding	0.0	0.0	1.0	6.0	2.0	0.0
Merged-chr12-77833626-3	chr12	77833125	77834125	+	852.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-393030.0	NM_172952	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103316624-4	chr15	103316118	103317118	+	852.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356627, intron 4 of 7)	intron (NM_001356627, intron 4 of 7)	-6180.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100471477-3	chr12	100470927	100471927	+	852.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 3 of 19)	L1MEc|LINE|L1	49395.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103306572-3	chr11	103306067	103307067	+	852.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38135.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	6.0	12.5	7.5	2.0	0.0	5.5
Merged-chr9-57580108-3	chr9	57579613	57580613	+	852.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022813, intron 4 of 8)	intron (NM_022813, intron 4 of 8)	-9339.0	NM_027895	71742.0	Mm.155877	NM_027895	ENSMUSG00000032308	Ulk3	1200015E14Rik	unc-51-like kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6663585-3	chr19	6663089	6664089	+	852.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120519.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29030715-3	chr17	29030185	29031185	+	852.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1975.0	NM_013663	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98951668-5	chr10	98951153	98952153	+	852.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	36501.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115407729-3	chr8	115407230	115408230	+	852.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	299164.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84921723-3	chr8	84921212	84922212	+	852.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019945, intron 12 of 25)	intron (NM_019945, intron 12 of 25)	8377.0	NR_103491	100503676.0	Mm.437155	NR_103491	ENSMUSG00000003812	Gm38426	-	predicted gene, 38426	ncRNA	2.0	1.0	0.5	0.0	4.0	1.5
Merged-chr13-30766623-3	chr13	30766134	30767134	+	852.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013674, exon 9 of 9)	3' UTR (NM_013674, exon 9 of 9)	17401.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78842695-3	chr15	78842236	78843236	+	852.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027219)	promoter-TSS (NM_027219)	89.0	NM_027219	104445.0	Mm.307488	NM_027219	ENSMUSG00000049521	Cdc42ep1	1810058K22Rik|AA980734|Borg5|CEP1|MSE55	CDC42 effector protein (Rho GTPase binding) 1	protein-coding	0.0	0.5	0.0	0.0	0.0	1.0
Merged-chr1-105865099-3	chr1	105864587	105865587	+	852.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84364.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105730733-3	chr5	105730217	105731217	+	852.322205	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	MIRb|SINE|MIR	29907.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	3.0	4.0	4.0	0.0	1.5	4.0
Merged-chr11-53411926-4	chr11	53411427	53412427	+	852.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_033565, exon 20 of 21)	exon (NM_033565, exon 20 of 21)	2730.0	NR_105885	102465554.0		NR_105885	ENSMUSG00000105908	Mir6920	mmu-mir-6920	microRNA 6920	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-123103420-4	chr3	123102922	123103922	+	852.30835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080451, intron 4 of 4)	intron (NM_080451, intron 4 of 4)	-68435.0	NM_001355462	59006.0	Mm.141157	NM_021503	ENSMUSG00000028116	Myoz2	1110012I24Rik|Fatz-2|Myozl2	myozenin 2	protein-coding	2.5	7.0	4.5	0.5	13.0	4.0
Merged-chr9-92303572-3	chr9	92303069	92304069	+	852.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5808.0	NM_001033184	78459.0	Mm.179195	NM_001033184	ENSMUSG00000074139	1700057G04Rik	-	RIKEN cDNA 1700057G04 gene	protein-coding	5.5	17.0	2.0	0.0	10.0	8.5
Merged-chr6-82772142-4	chr6	82771643	82772643	+	852.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 1 of 17)	intron (NM_013820, intron 1 of 17)	2311.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36982574-4	chr16	36982076	36983076	+	852.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358217, intron 1 of 3)	intron (NM_001358217, intron 1 of 3)	-3440.0	NM_001037321	207215.0	Mm.211899	NM_001037321	ENSMUSG00000047746	Fbxo40	9830003A13Rik|mKIAA1195	F-box protein 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136884706-4	chr4	136884244	136885244	+	852.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009777, intron 1 of 2)	intron (NM_009777, intron 1 of 2)	1433.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	27.5	75.5	37.0	21.5	78.0	25.0
Merged-chr4-82506359-2	chr4	82505859	82506859	+	852.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113210)	promoter-TSS (NM_001113210)	-580.0	NM_008687	18028.0	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5047521-2	chr17	5047021	5048021	+	852.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 2 of 19)	intron (NM_001085355, intron 2 of 19)	52447.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-18876290-5	chr11	18875873	18876873	+	852.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	142596.0	NM_001193271	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	4.0	1.0	0.0	6.5	9.5	3.0
Merged-chr12-80014542-4	chr12	80014063	80015063	+	852.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78299.0	NR_131074	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83532481-2	chr11	83531981	83532981	+	852.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1963.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135688990-2	chr1	135688490	135689490	+	852.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31073.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120683723-3	chr8	120683222	120684222	+	852.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15402.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100148529-3	chr13	100147986	100148986	+	852.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126182, intron 15 of 15)	ID4_|SINE|ID	23631.0	NM_011420	20595.0	Mm.2025	NM_011420	ENSMUSG00000021645	Smn1	AI849087|Gemin1|Smn	survival motor neuron 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38532446-5	chr6	38531871	38532871	+	852.216675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2490.0	NM_025363	66117.0	Mm.158971	NM_025363	ENSMUSG00000019689	Fmc1	1110001J03Rik	formation of mitochondrial complex V assembly factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108170664-4	chr12	108170169	108171169	+	852.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028262, intron 1 of 12)	intron (NM_028262, intron 1 of 12)	8615.0	NM_028262	52690.0	Mm.159185	NM_028262	ENSMUSG00000056770	Setd3	2610102I01Rik|2610305M23Rik|6030490B17Rik|D12Ertd771e	SET domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99460216-4	chr5	99459710	99460710	+	852.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-207283.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135605239-4	chr7	135604743	135605743	+	852.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316679)	promoter-TSS (NM_001316679)	-585.0	NM_001316679	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57988045-4	chr15	57987541	57988541	+	852.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173862, intron 1 of 3)	intron (NM_173862, intron 1 of 3)	2138.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191124016-5	chr1	191123616	191124616	+	852.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25702.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	11.0	48.5	36.5	11.0	36.0	10.0
Merged-chr17-80208498-3	chr17	80208018	80209018	+	852.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1213.0	NM_001195485	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81507319-2	chr15	81506819	81507819	+	852.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	41003.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34021864-2	chr17	34021364	34022364	+	852.1666869999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_009066, exon 6 of 7)	exon (NM_009066, exon 6 of 7)	2816.0	NM_009066	19763.0	Mm.20343	NM_009066	ENSMUSG00000024325	Ring1	Ring1A	ring finger protein 1	protein-coding	5.0	10.5	1.0	8.0	0.0	1.0
Merged-chr16-33879707-3	chr16	33879181	33880181	+	852.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 4 of 14)	L1MEd|LINE|L1	50016.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58212578-2	chr15	58212078	58213078	+	852.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026346, intron 1 of 8)	intron (NM_026346, intron 1 of 8)	2314.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35159454-2	chr8	35158973	35159973	+	852.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-193783.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	0.0	1.5	0.0	2.5	0.5	0.5
Merged-chr5-34634669-5	chr5	34634233	34635233	+	852.1400150000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026660, intron 8 of 12)	intron (NM_026660, intron 8 of 12)	2479.0	NM_001356978	68294.0	Mm.34564	NM_026660	ENSMUSG00000001082	Mfsd10	0610009O03Rik|Tetran	major facilitator superfamily domain containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-92038216-4	chr13	92037745	92038745	+	852.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50203.0	NM_009027	19418.0	Mm.248630	NM_009027	ENSMUSG00000021708	Rasgrf2	6330417G04Rik|AW048350|Grf2|Ras-GRF2	RAS protein-specific guanine nucleotide-releasing factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-71888707-3	chr11	71888218	71889218	+	852.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	51404.0	NR_045942	73816.0	Mm.390391	NR_045942	ENSMUSG00000085528	4930401O10Rik	-	RIKEN cDNA 4930401O10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118457752-3	chr11	118457305	118458305	+	852.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-2810.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54644546-3	chr6	54644033	54645033	+	852.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164361, exon 14 of 14)	3' UTR (NM_001164361, exon 14 of 14)	-37091.0	NM_001289741	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13748327-3	chr9	13747831	13748831	+	852.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023858)	promoter-TSS (NM_023858)	-850.0	NR_024025	77116.0	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129174654-3	chr2	129174170	129175170	+	852.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6003.0	NR_045264	100048701.0	Mm.428544	NR_045264	ENSMUSG00000084826	AI847159	-	expressed sequence AI847159	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28511227-4	chr17	28510697	28511697	+	852.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19664.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123829991-4	chr5	123829494	123830494	+	852.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35522.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	11.0	9.0	5.5	8.0	7.5	3.0
Merged-chr2-77282342-4	chr2	77281864	77282864	+	852.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1772.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141160423-3	chr4	141159934	141160934	+	852.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172518, intron 1 of 9)	intron (NM_172518, intron 1 of 9)	12512.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93960222-3	chr10	93959737	93960737	+	852.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3626.0	NR_029764	723908.0		NR_029764	ENSMUSG00000065607	Mir331	Mirn331|mmu-mir-331	microRNA 331	ncRNA	31.0	131.5	121.5	29.5	46.5	37.0
Merged-chr13-81135725-4	chr13	81135247	81136247	+	852.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	171673.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8372092-3	chr17	8371650	8372650	+	852.044434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161832)	promoter-TSS (NM_001161832)	-246.0	NM_001161832	21331.0	Mm.482744	NM_013682		T2	brachyury2	brachyury 2	protein-coding	0.0	6.0	3.0	5.0	1.5	1.5
Merged-chr6-127246035-4	chr6	127245504	127246504	+	852.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61963.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16373293-8	chr19	16372818	16373818	+	852.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 5 of 6)	intron (NM_008139, intron 5 of 6)	-58314.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5187031-4	chr18	5186536	5187536	+	852.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21305.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4388725-1	chr11	4388225	4389225	+	852.0	f0_balb.idr	intron (NM_029458, intron 10 of 10)	L1M4b|LINE|L1	52357.0	NM_029458	75828.0	Mm.159592	NM_029458	ENSMUSG00000020419	Hormad2	4930529M09Rik	HORMA domain containing 2	protein-coding	0.0	2.0	0.5	0.0	2.0	0.5
Merged-chr16-38353744-2	chr16	38353244	38354244	+	852.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001017429)	TTS (NM_001017429)	6745.0	NM_001017429	12856.0	Mm.27396	NM_001017429	ENSMUSG00000046516	Cox17	AI037035	cytochrome c oxidase assembly protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120349626-3	chr11	120349115	120350115	+	852.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038126, intron 1 of 1)	CpG	937.0	NR_038126	66838.0	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108384813-4	chr6	108384338	108385338	+	852.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 20 of 61)	intron (NM_010585, intron 20 of 61)	-104905.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87285263-2	chr16	87284763	87285763	+	852.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68922.0	NM_001159331	67768.0	Mm.296532	NM_026366	ENSMUSG00000044442	N6amt1	5830445C04Rik|Hemk2|Pred28	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-77531578-2	chr12	77531078	77532078	+	852.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	121437.0	NM_001252616	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154890947-1	chr2	154890447	154891447	+	852.0	f1_c57bl6.idr	intron (NM_026030, intron 1 of 8)	B1_Mm|SINE|Alu	1959.0	NM_026030	67204.0	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	16.0	23.5	30.0	11.0	30.5	36.0
Merged-chr6-31067179-2	chr6	31066679	31067679	+	852.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4086.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-82041645-1	chr6	82041145	82042145	+	852.0	f0_balb.idr	promoter-TSS (NM_145570)	promoter-TSS (NM_145570)	17.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44379404-2	chr10	44378904	44379904	+	852.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	19728.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	0.0	0.0	1.5	0.0	0.0	1.5
Merged-chr15-67480132-2	chr15	67479632	67480632	+	852.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	253363.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	3.0	7.0	10.5	3.0	6.5	10.5
Merged-chr4-72413503-1	chr4	72413003	72414003	+	852.0	f0_balb.idr	Intergenic	Intergenic	212259.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144586852-4	chr3	144586364	144587364	+	852.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053102, intron 2 of 4)	intron (NM_053102, intron 2 of 4)	16437.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35240632-4	chr17	35240145	35241145	+	852.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1101.0	NM_019693	53817.0	Mm.439827	NM_019693	ENSMUSG00000019432	Ddx39b	0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	protein-coding	66.5	107.0	77.0	75.0	108.5	66.0
Merged-chr7-92551099-3	chr7	92550592	92551592	+	852.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10057.0	NM_025515	66365.0	Mm.21173	NM_025515	ENSMUSG00000030613	Ccdc90b	2310015N07Rik|C86558	coiled-coil domain containing 90B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-45623631-2	chr11	45623137	45624137	+	852.0	f0_balb.idr|f1_balb.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-184446.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	7.0	28.5	16.5	40.5	57.0	33.0
Merged-chr3-104219869-3	chr3	104219346	104220346	+	852.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159354, exon 1 of 21)	exon (NM_001159354, exon 1 of 21)	560.0	NM_133853	99470.0	Mm.264849	NM_133853	ENSMUSG00000052539	Magi3	4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding	0.5	1.0	0.0	0.5	1.0	0.0
Merged-chr7-27165113-2	chr7	27164613	27165613	+	852.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_053208, exon 2 of 6)	exon (NM_053208, exon 2 of 6)	615.0	NM_001357767	112406.0	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45772755-2	chr14	45772255	45773255	+	852.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114612.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	9.0	2.0	4.5	0.0	0.0	11.0
Merged-chr15-89067890-2	chr15	89067390	89068390	+	852.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001002005, exon 2 of 3)	exon (NM_001002005, exon 2 of 3)	7964.0	NR_040417	69120.0	Mm.276391	NR_040417	ENSMUSG00000087331	1810021B22Rik	-	RIKEN cDNA 1810021B22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41391844-2	chr19	41391325	41392325	+	852.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-6755.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	4.0	2.0	0.5	4.5	6.5	1.0
Merged-chr10-40884258-2	chr10	40883758	40884758	+	852.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031877, intron 1 of 8)	CpG	724.0	NM_031877	83767.0	Mm.41353	NM_031877	ENSMUSG00000019831	Wasf1	AI195380|AI838537|Scar|WAVE|WAVE-1	WAS protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4940219-2	chr16	4939719	4940719	+	852.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037666)	promoter-TSS (NR_037666)	-634.0	NR_037666	100503704.0	Mm.480572	NR_037666	ENSMUSG00000097397	Gm16861	-	predicted gene, 16861	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-144998416-1	chr4	144997916	144998916	+	852.0	f0_balb.idr	intron (NM_001276465, intron 67 of 69)	intron (NM_001276465, intron 67 of 69)	105279.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-51790482-2	chr12	51789982	51790982	+	852.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_144788, exon 14 of 43)	exon (NM_144788, exon 14 of 43)	39054.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	2.5	10.0	1.5	0.0	1.0	5.0
Merged-chr4-135230064-2	chr4	135229564	135230564	+	852.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 2 of 5)	intron (NM_013885, intron 2 of 5)	42696.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76082656-2	chr15	76082156	76083156	+	852.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1710.0	NM_028364	67959.0	Mm.29965	NM_028364	ENSMUSG00000002524	Puf60	2410104I19Rik|2810454F19Rik|SIAHBP1	poly-U binding splicing factor 60	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34351374-1	chr17	34350874	34351874	+	852.0	f1_c57bl6.idr	Intergenic	Intergenic	-3448.0	NM_079835	547431.0	Mm.441007	NM_079835	ENSMUSG00000024340	Btnl2	BTL-II|BTLN2|Btl2|Gm315|NG9	butyrophilin-like 2	protein-coding	1.0	4.0	11.0	1.0	2.5	5.0
Merged-chr1-135110319-3	chr1	135109815	135110815	+	852.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007955, exon 32 of 38)	exon (NM_007955, exon 32 of 38)	-5039.0	NM_001033409	329252.0	Mm.279594	NM_001033409	ENSMUSG00000042793	Lgr6	A530037C04Rik|D830026M09	leucine-rich repeat-containing G protein-coupled receptor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3706488-2	chr12	3705988	3706988	+	852.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 9 of 17)	intron (NM_001162465, intron 9 of 17)	-100492.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5562623-2	chr19	5562123	5563123	+	852.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-2048.0	NM_019935	18426.0	Mm.280225	NM_019935	ENSMUSG00000024922	Ovol1	BB147136|Ovo1|movo1	ovo like zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142413010-2	chr5	142412510	142413510	+	852.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 1 of 8)	PB1D7|SINE|Alu	11513.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-35451724-2	chr11	35451224	35452224	+	852.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011412, intron 4 of 35)	intron (NM_011412, intron 4 of 35)	-165092.0	NR_029799	723924.0		NR_029799	ENSMUSG00000065583	Mir218-2	Mirn218-2|mir-218-2	microRNA 218-2	ncRNA	3.5	0.0	0.5	2.0	0.0	1.5
Merged-chr10-111334125-1	chr10	111333625	111334625	+	852.0	f1_balb.idr	Intergenic	URR1B|DNA|hAT-Charlie	35446.0	NM_027914	71769.0	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156313397-1	chr2	156312897	156313897	+	852.0	f1_c57bl6.idr	promoter-TSS (NM_020255)	promoter-TSS (NM_020255)	-693.0	NM_020255	19018.0	Mm.389346	NM_020255	ENSMUSG00000046229	Scand1	2310003H23Rik|Leap1|PGC-2|Ppargc2	SCAN domain-containing 1	protein-coding	43.5	154.0	96.0	31.5	84.5	48.5
Merged-chr15-36911366-2	chr15	36910866	36911866	+	852.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96036.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126923981-2	chr8	126923481	126924481	+	852.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21940.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-8877322-1	chr5	8876822	8877822	+	852.0	f0_balb.idr	Intergenic	Intergenic	-16399.0	NM_008830	18670.0	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-88241769-3	chr9	88241262	88242262	+	852.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85847.0	NM_011851	23959.0	Mm.244235	NM_011851	ENSMUSG00000032420	Nt5e	2210401F01Rik|5'-NT|AI447961|CD73|NT|Nt5|eNT	5' nucleotidase, ecto	protein-coding	7.0	0.0	1.0	6.5	0.0	1.0
Merged-chr2-18056114-2	chr2	18055614	18056614	+	852.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_149308, intron 1 of 9)	intron (NR_149308, intron 1 of 9)	386.0	NR_149308	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3646850-2	chr8	3646350	3647350	+	852.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ZP3AR|Satellite|Satellite	-8920.0	NM_001204959	57264.0	Mm.1181	NM_022984	ENSMUSG00000012705	Retn	ADSF|Fizz3|Rstn|Xcp4	resistin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112331383-3	chr13	112330848	112331848	+	852.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168403, intron 5 of 11)	intron (NM_001168403, intron 5 of 11)	42830.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	11.0	3.5	20.0	34.0	15.0	14.0
Merged-chr11-102440462-3	chr11	102439948	102440948	+	852.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199200, intron 3 of 7)	intron (NM_199200, intron 3 of 7)	7215.0	NM_199200	217219.0	Mm.259924	NM_199200	ENSMUSG00000034685	Fam171a2	-	family with sequence similarity 171, member A2	protein-coding	0.0	0.0	0.0	0.0	1.5	0.0
Merged-chr5-39961122-1	chr5	39960622	39961622	+	852.0	f1_c57bl6.idr	Intergenic	Intergenic	-316491.0	NM_010474	15476.0	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	0.0	0.0	2.0	3.0	0.0	0.5
Merged-chr13-102645028-3	chr13	102644534	102645534	+	852.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48513.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-143947357-2	chr2	143946857	143947857	+	852.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_024281)	TTS (NM_024281)	32026.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-83430960-3	chr18	83430502	83431502	+	851.9682619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105118.0	NR_045361	70960.0	Mm.410834	NR_045361		4921531P14Rik	1700108N05Rik	RIKEN cDNA 4921531P14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35127918-4	chr7	35127417	35128417	+	851.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	8624.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	0.0	0.0	1.0	2.5	8.0	1.5
Merged-chr16-91739235-4	chr16	91738720	91739720	+	851.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	B4A|SINE|B4	9849.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11205197-4	chr2	11204701	11205701	+	851.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	MTD|LTR|ERVL-MaLR	32819.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13671360-4	chr16	13670853	13671853	+	851.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025653)	promoter-TSS (NM_025653)	-505.0	NM_025976	67118.0	Mm.223689	NM_025653	ENSMUSG00000022684	Bfar	3010001A07Rik|3110001I22Rik|AI666707|AW107665|Bar|Rnf47	bifunctional apoptosis regulator	protein-coding	73.0	120.0	111.0	81.0	129.0	146.5
Merged-chr15-50779201-3	chr15	50778731	50779731	+	851.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	109818.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	6.0	1.5	9.0	1.5	1.0	10.5
Merged-chr2-44922694-4	chr2	44922193	44923193	+	851.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61071.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35051381-4	chr17	35050861	35051861	+	851.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033444, intron 1 of 5)	intron (NM_033444, intron 1 of 5)	1118.0	NM_033444	114584.0	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	41.0	100.0	101.0	53.5	88.0	78.5
Merged-chr4-126114203-4	chr4	126113710	126114710	+	851.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 1 of 10)	intron (NM_028800, intron 1 of 10)	10253.0	NM_001145827	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-10589871-4	chr12	10589371	10590371	+	851.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143483.0	NR_110487	328061.0	Mm.56067	NR_110487	ENSMUSG00000112792	Gm38407	4931412M21	predicted gene, 38407	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44485313-2	chr7	44484813	44485813	+	851.900024	f1_balb.idr|f1_c57bl6.idr	TTS (NR_131001)	TTS (NR_131001)	796.0	NR_131001	71368.0	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	Gm45123	RIKEN cDNA 5430431A17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84799469-4	chr18	84798976	84799976	+	851.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51862.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93370521-4	chr10	93370031	93371031	+	851.8916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34320.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	4.0	4.0	12.5	51.0	135.0	57.5
Merged-chr9-70943589-3	chr9	70943079	70944079	+	851.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324472, intron 1 of 9)	MTE2a|LTR|ERVL-MaLR	8642.0	NM_001324472	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101998688-3	chr7	101998177	101999177	+	851.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133947, exon 14 of 25)	exon (NM_133947, exon 14 of 25)	19478.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr5-73633312-3	chr5	73632813	73633813	+	851.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153568)	promoter-TSS (NM_153568)	-892.0	NM_153568	231296.0	Mm.168948	NM_153568	ENSMUSG00000067206	Lrrc66	-	leucine rich repeat containing 66	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-89070922-4	chr1	89070393	89071393	+	851.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133816, intron 1 of 5)	CpG	478.0	NM_133816	98402.0	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-34469897-4	chr15	34469386	34470386	+	851.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173421, intron 1 of 2)	intron (NM_173421, intron 1 of 2)	16574.0	NM_173421	239368.0	Mm.211977	NM_173421	ENSMUSG00000044726	Erich5	-	glutamate rich 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34533213-4	chr5	34532710	34533710	+	851.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	7426.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64634972-4	chr5	64634485	64635485	+	851.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC|LINE|L1	-24286.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	0.5	2.5	0.0	3.0	1.0	3.0
Merged-chr16-32673074-4	chr16	32672545	32673545	+	851.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347185)	promoter-TSS (NM_001347185)	-109.0	NM_001347185	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0.0	12.5	0.5	0.0	12.5	0.5
Merged-chr19-56069100-4	chr19	56068601	56069601	+	851.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	173780.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-124103432-4	chr9	124102910	124103910	+	851.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009915, intron 1 of 2)	intron (NM_009915, intron 1 of 2)	1227.0	NM_009915	12772.0	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54971825-3	chr6	54971289	54972289	+	851.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001171007)	promoter-TSS (NM_001171007)	-128.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0.5	9.5	21.0	2.5	15.5	9.0
Merged-chr18-49968895-4	chr18	49968390	49969390	+	851.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10537.0	NM_001177760	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0.0	8.0	1.5	0.0	7.0	5.0
Merged-chr1-166171403-4	chr1	166170919	166171919	+	851.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41198.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6629915-2	chr11	6629415	6630415	+	851.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3848.0	NM_134011	21379.0	Mm.247761	NM_134011	ENSMUSG00000000384	Tbrg4	2310042P22Rik|AA120735|AA408001|AI527316|Cpr2|R74877|Tb-12|mKIAA0948	transforming growth factor beta regulated gene 4	protein-coding	0.0	1.0	1.0	0.0	1.0	0.0
Merged-chr8-13164538-3	chr8	13164032	13165032	+	851.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010684, intron 1 of 8)	intron (NM_010684, intron 1 of 8)	5371.0	NM_010684	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-154842487-3	chr3	154842011	154843011	+	851.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177066, intron 21 of 24)	intron (NM_177066, intron 21 of 24)	131378.0	NM_175176	209601.0	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71196839-3	chr17	71196325	71197325	+	851.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	-7829.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	8.5	9.0	6.5	4.0	9.5	14.0
Merged-chr17-28909561-3	chr17	28909074	28910074	+	851.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172450, exon 2 of 12)	exon (NM_172450, exon 2 of 12)	4309.0	NR_045457	74179.0	Mm.248931	NR_045457	ENSMUSG00000085333	1700030A11Rik	-	RIKEN cDNA 1700030A11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-14124501-2	chr9	14124001	14125001	+	851.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-151800.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28446655-3	chr7	28446184	28447184	+	851.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_022024, exon 7 of 7)	3' UTR (NM_022024, exon 7 of 7)	-5301.0	NM_030562	80749.0	Mm.483073	NM_030562	ENSMUSG00000030600	Lrfn1	BC004018|SALM2|Semo1	leucine rich repeat and fibronectin type III domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64068510-3	chr15	64067972	64068972	+	851.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-8024.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-125274555-3	chr10	125274064	125275064	+	851.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 3 of 5)	intron (NM_001358496, intron 3 of 5)	34252.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110667442-4	chr9	110666976	110667976	+	851.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	10973.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	1.0	8.5	5.0	1.0	8.0	4.5
Merged-chr2-4880980-2	chr2	4880480	4881480	+	851.7999880000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175400)	promoter-TSS (NM_175400)	-584.0	NM_175400	109079.0	Mm.34329	NM_175400	ENSMUSG00000026662	Sephs1	1110046B24Rik|AA589574|AI505014|AW111620|SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78792742-4	chr11	78792257	78793257	+	851.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33838.0	NM_001076681	66274.0	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-39510163-4	chr12	39509663	39510663	+	851.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	527213.0	NM_007487	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-6729619-3	chr7	6729119	6730119	+	851.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290994)	promoter-TSS (NM_001290994)	800.0	NM_008817	18616.0	Mm.389800	NM_008817	ENSMUSG00000002265	Peg3	AL022617|ASF-1|End4|Gcap4|Pw1|Zfp102|mKIAA0287	paternally expressed 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115125343-3	chr5	115124844	115125844	+	851.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175352, exon 5 of 5)	3' UTR (NM_175352, exon 5 of 5)	-5998.0	NM_007383	11409.0	Mm.18759	NM_007383	ENSMUSG00000029545	Acads	AI196007|Bcd-1|Bcd1|Hdlq8|SCAD	acyl-Coenzyme A dehydrogenase, short chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182907484-3	chr1	182906982	182907982	+	851.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47306.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr7-4796167-4	chr7	4795646	4796646	+	851.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	3181.0	NM_009081	19943.0	Mm.379002	NM_009081	ENSMUSG00000030432	Rpl28	D7Wsu21e	ribosomal protein L28	protein-coding	2.5	5.5	2.5	0.0	0.0	1.5
Merged-chr16-35156070-2	chr16	35155570	35156570	+	851.75	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001012765, exon 1 of 21)	5' UTR (NM_001012765, exon 1 of 21)	434.0	NM_001012765	224129.0	Mm.41137	NM_001012765	ENSMUSG00000022840	Adcy5	AW121902|Ac5	adenylate cyclase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-14197351-4	chr10	14196819	14197819	+	851.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	230940.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	27.5	4.0	12.0	10.0	1.5	15.0
Merged-chr17-25334066-2	chr17	25333562	25334562	+	851.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11500.0	NM_031187	100503895.0	Mm.3301	NM_031187	ENSMUSG00000024173	Tpsab1	MMCP-7|Mcp-7|Mcp7|Mcpt7	tryptase alpha/beta 1	protein-coding	2.5	1.5	3.5	1.5	0.0	1.0
Merged-chr9-36968402-2	chr9	36967902	36968902	+	851.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_148950, exon 3 of 12)	exon (NM_148950, exon 3 of 12)	134828.0	NM_001357611	235180.0	Mm.5264	NM_183171	ENSMUSG00000032118	Fez1	UNC-76|UNC76	fasciculation and elongation protein zeta 1 (zygin I)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-18055591-4	chr3	18055096	18056096	+	851.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021560, exon 1 of 1)	exon (NM_021560, exon 1 of 1)	1271.0	NM_021560	59058.0	Mm.149938	NM_021560	ENSMUSG00000025128	Bhlhe22	Beta3|Beta3a|Bhlhb5	basic helix-loop-helix family, member e22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82903988-2	chr18	82903488	82904488	+	851.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6891.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-69475546-4	chr17	69475033	69476033	+	851.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145192, intron 1 of 1)	intron (NM_001145192, intron 1 of 1)	36207.0	NM_001145192	320722.0	Mm.400254	NM_001145192	ENSMUSG00000091636	Akain1	A330050F15Rik	A kinase (PRKA) anchor inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16435646-4	chr19	16435130	16436130	+	851.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008137)	promoter-TSS (NM_008137)	-37.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86599996-4	chr1	86599516	86600516	+	851.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360887, intron 5 of 6)	intron (NM_001360887, intron 5 of 6)	17095.0	NM_001360887	26895.0	Mm.12973	NM_172974	ENSMUSG00000026240	Cops7b	D1Wsu66e|E130114M23	COP9 signalosome subunit 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-52175490-3	chr9	52174939	52175939	+	851.7000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	polypurine|Low_complexity|Low_complexity	-7328.0	NM_001162921	244871.0	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	3.0	1.5	1.5	0.0	1.5	4.5
Merged-chr6-145123108-4	chr6	145122636	145123636	+	851.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008511, intron 1 of 18)	intron (NM_008511, intron 1 of 18)	1397.0	NM_008511	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	85.5	129.0	111.5	36.5	115.5	111.0
Merged-chr2-90578669-3	chr2	90578188	90579188	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	1959.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-164014770-3	chr1	164014293	164015293	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	19904.0	NM_001355132	69962.0	Mm.27284	NM_027279	ENSMUSG00000041396	Mettl18	2810422O20Rik|C78571	methyltransferase like 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-56548064-3	chr8	56547562	56548562	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009951, intron 1 of 10)	ORR1E|LTR|ERVL-MaLR	2504.0	NM_001009951	382010.0	Mm.425534	NM_001009951	ENSMUSG00000038215	Cep44	4933440G23Rik|mKIAA1712	centrosomal protein 44	protein-coding	0.0	0.0	0.0	2.0	2.0	2.0
Merged-chr11-83271192-4	chr11	83270719	83271719	+	851.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15507.0	NM_001166028	237890.0	Mm.297670	NM_001166028	ENSMUSG00000082101	Slfn14	Gm20|Slfn14-ps	schlafen 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101999578-3	chr7	101999047	102000047	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133947, exon 14 of 25)	exon (NM_133947, exon 14 of 25)	18608.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0.0	1.0	0.5	0.0	1.0	0.5
Merged-chr16-22070735-3	chr16	22070232	22071232	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 10 of 15)	intron (NM_183029, intron 10 of 15)	61248.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45079381-3	chr19	45078887	45079887	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001362398)	TTS (NM_001362398)	3300.0	NM_001362397	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4777394-3	chr7	4776907	4777907	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290423, intron 1 of 4)	intron (NM_001290423, intron 1 of 4)	734.0	NM_008350	16156.0	Mm.35814	NM_008350	ENSMUSG00000004371	Il11	IL-11	interleukin 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28208206-3	chr17	28207716	28208716	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027185, intron 1 of 10)	intron (NM_027185, intron 1 of 10)	438.0	NM_027185	23853.0	Mm.204731	NM_027185	ENSMUSG00000002257	Def6	2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6	differentially expressed in FDCP 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116751336-3	chr3	116750868	116751868	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081326, intron 30 of 33)	B3|SINE|B2	-39088.0	NM_001362374	229782.0	Mm.190758	NM_144902	ENSMUSG00000027957	Slc35a3	2310050P13Rik	solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3	protein-coding	3.0	0.0	4.0	2.0	0.0	4.0
Merged-chr16-92475511-3	chr16	92475019	92476019	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-3223.0	NM_029740	76785.0	Mm.444318	NM_029740		2410124H12Rik	-	RIKEN cDNA 2410124H12 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3772114-3	chr5	3771619	3772619	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003909, intron 2 of 19)	intron (NM_001003909, intron 2 of 19)	668.0	NM_001289529	70797.0	Mm.130148	NM_001003909	ENSMUSG00000040351	Ankib1	2310061P20Rik|4631416I11Rik|AW494740|C80642|mKIAA1386	ankyrin repeat and IBR domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20845513-3	chr14	20844992	20845992	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8830.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31340133-4	chr6	31339634	31340634	+	851.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58639.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149901718-3	chr4	149901215	149902215	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029035, intron 2 of 2)	intron (NM_029035, intron 2 of 2)	53291.0	NM_029035	74646.0	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-39769072-3	chr15	39768579	39769579	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_022722, exon 10 of 10)	3' UTR (NM_022722, exon 10 of 10)	23149.0	NM_001289508	75766.0	Mm.159563	NM_029422	ENSMUSG00000022303	Dcstamp	4833414I07Rik|DC-STAMP|FIND|Tm7sf4|mDC-STAMP	dendrocyte expressed seven transmembrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-167284881-3	chr1	167284375	167285375	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_030724, exon 1 of 7)	5' UTR (NM_030724, exon 1 of 7)	252.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71561551-4	chr8	71560985	71561985	+	851.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145598, exon 2 of 2)	3' UTR (NM_145598, exon 2 of 2)	-2614.0	NM_001100462	434325.0	Mm.33613	NM_001100462	ENSMUSG00000043664	Tmem221	-	transmembrane protein 221	protein-coding	10.0	16.0	5.0	11.5	15.0	1.0
Merged-chr10-87840199-3	chr10	87839708	87840708	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18057.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.0	12.5	12.0	2.5	5.0	8.5
Merged-chr10-80964308-2	chr10	80963808	80964808	+	851.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	34217.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105408512-2	chr8	105408012	105409012	+	851.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_177791, exon 2 of 17)	exon (NM_177791, exon 2 of 17)	4990.0	NM_177791	279499.0	Mm.67628	NM_177791	ENSMUSG00000051648	Kctd19	4922504H04Rik	potassium channel tetramerisation domain containing 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87280716-2	chr17	87280216	87281216	+	851.666626	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015506, exon 2 of 5)	non-coding (NR_015506, exon 2 of 5)	2098.0	NR_015506	74597.0	Mm.63783	NR_015506	ENSMUSG00000085287	4833418N02Rik	-	RIKEN cDNA 4833418N02 gene	ncRNA	9.5	13.5	7.0	7.5	14.0	9.0
Merged-chr16-31070123-2	chr16	31069643	31070643	+	851.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 1 of 3)	intron (NM_198626, intron 1 of 3)	11289.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0.0	6.0	3.0	0.0	1.0	4.0
Merged-chr4-149309464-4	chr4	149308965	149309965	+	851.662476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GGA)n|Simple_repeat|Simple_repeat	-1732.0	NM_001290995	16561.0	Mm.402393	NM_008441	ENSMUSG00000063077	Kif1b	A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204	kinesin family member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94689153-4	chr11	94688650	94689650	+	851.645874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-11657.0	NM_145828	217119.0	Mm.100638	NM_145828	ENSMUSG00000020868	Xylt2	E030002B02Rik|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67349533-2	chr17	67349033	67350033	+	851.642822	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	4926.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101466733-5	chr7	101466151	101467151	+	851.6381230000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152192, intron 3 of 31)	intron (NR_152192, intron 3 of 31)	-8725.0	NR_029791	387157.0		NR_029791	ENSMUSG00000065446	Mir139	Mirn139|mir-139|mmu-mir-139	microRNA 139	ncRNA	7.5	11.0	16.0	5.0	24.0	21.5
Merged-chr2-118587842-4	chr2	118587347	118588347	+	851.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-10364.0	NM_009773	12236.0	Mm.29133	NM_009773	ENSMUSG00000040084	Bub1b	AU045529|BUBR1	BUB1B, mitotic checkpoint serine/threonine kinase	protein-coding	4.0	4.5	3.0	6.0	2.5	0.0
Merged-chr13-98264293-4	chr13	98263791	98264791	+	851.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271391, intron 1 of 7)	intron (NM_001271391, intron 1 of 7)	1215.0	NM_001271388	68558.0	Mm.209642	NM_023472	ENSMUSG00000021661	Ankra2	1110004M18Rik|Ankra	ankyrin repeat, family A (RFXANK-like), 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-68394990-3	chr15	68394509	68395509	+	851.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53720.0	NR_029718	387228.0		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	3.0	3.0	1.0	4.0	4.0	2.0
Merged-chr11-68623625-4	chr11	68623120	68624120	+	851.604126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36583.0	NM_177779	276920.0	Mm.123046	NM_177779	ENSMUSG00000045915	Ccdc42	A530001H01Rik	coiled-coil domain containing 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6225462-4	chr4	6224960	6225960	+	851.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34355.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	1.5	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60838700-2	chr11	60838200	60839200	+	851.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172112, intron 1 of 6)	intron (NM_001172112, intron 1 of 6)	8069.0	NM_145428	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50189613-6	chr17	50189200	50190200	+	851.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 1 of 9)	intron (NM_181397, intron 1 of 9)	797.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-115323492-4	chr10	115323019	115324019	+	851.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7928.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45235978-4	chr9	45235471	45236471	+	851.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 1 of 4)	intron (NM_001198971, intron 1 of 4)	30736.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76364807-4	chr16	76364309	76365309	+	851.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	8240.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32671662-4	chr11	32671179	32672179	+	851.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271349, intron 1 of 11)	intron (NM_001271349, intron 1 of 11)	29124.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	6.5	7.0	6.5	5.5	7.0	6.5
Merged-chr8-24428576-3	chr8	24428079	24429079	+	851.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10367.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103102729-6	chr14	103102271	103103271	+	851.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3205.0	NM_001360342	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-72919449-7	chr17	72918918	72919918	+	851.5476070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029999, intron 1 of 2)	CpG	1113.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	10.5	52.0	26.0	22.5	46.5	40.0
Merged-chr6-115380993-4	chr6	115380490	115381490	+	851.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 1 of 7)	intron (NM_001308354, intron 1 of 7)	18641.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30078153-4	chr2	30077636	30078636	+	851.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153805)	promoter-TSS (NM_153805)	-562.0	NM_153805	263803.0	Mm.233843	NM_153805	ENSMUSG00000026785	Pkn3	AW209115|BC034126	protein kinase N3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74841275-2	chr11	74840775	74841775	+	851.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010813, intron 4 of 5)	intron (NM_010813, intron 4 of 5)	10351.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	2.0	5.0	0.0	0.0	1.0	5.5
Merged-chr4-48046769-3	chr4	48046271	48047271	+	851.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015743, intron 1 of 7)	intron (NM_015743, intron 1 of 7)	1466.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25437748-2	chr12	25437234	25438234	+	851.5	f0_balb.idr|f1_balb.idr	Intergenic	B4|SINE|B4	308560.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.0	14.0	1.5	0.0	0.5	5.0
Merged-chr13-8885138-2	chr13	8884638	8885638	+	851.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145360)	promoter-TSS (NM_145360)	-468.0	NM_145360	319554.0	Mm.29847	NM_145360	ENSMUSG00000058258	Idi1	4832416K17Rik|IPPI1	isopentenyl-diphosphate delta isomerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-68941906-2	chr16	68941406	68942406	+	851.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	858475.0	NR_130991	78110.0	Mm.211406	NR_130991	ENSMUSG00000107073	4930428D20Rik	Gm43265	RIKEN cDNA 4930428D20 gene	ncRNA	1.0	4.0	0.0	0.0	4.0	0.0
Merged-chr7-133116230-2	chr7	133115730	133116730	+	851.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009980, intron 1 of 10)	intron (NM_009980, intron 1 of 10)	7253.0	NM_009980	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39494657-2	chr18	39494157	39495157	+	851.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7412.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64045455-2	chr15	64044955	64045955	+	851.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	MTE2b|LTR|ERVL-MaLR	14309.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182909290-3	chr1	182908760	182909760	+	851.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45528.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98927221-2	chr13	98926721	98927721	+	851.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178716)	promoter-TSS (NM_178716)	-837.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-53068387-6	chr6	53068013	53069013	+	851.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_173406, exon 1 of 5)	exon (NM_173406, exon 1 of 5)	111.0	NM_173406	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155052307-2	chr1	155051807	155052807	+	851.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30957.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-5823348-2	chr10	5822881	5823881	+	851.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175374, intron 1 of 6)	intron (NM_175374, intron 1 of 6)	562.0	NM_175374	108853.0	Mm.55082	NM_175374	ENSMUSG00000019774	Mtrf1l	9130004K12Rik	mitochondrial translational release factor 1-like	protein-coding	11.0	18.5	15.0	24.5	35.0	22.5
Merged-chr19-6944245-2	chr19	6943745	6944745	+	851.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285453, intron 2 of 3)	B3A|SINE|B2	1683.0	NM_001285453	12015.0	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131526077-2	chr1	131525577	131526577	+	851.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 1 of 22)	CpG	1284.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136129434-3	chr1	136128932	136129932	+	851.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_046167, exon 3 of 4)	non-coding (NR_046167, exon 3 of 4)	1751.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-10432324-3	chr14	10431830	10432830	+	851.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 4 of 9)	intron (NM_001360141, intron 4 of 9)	21128.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-30535363-2	chr19	30534863	30535863	+	851.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4316.0	NR_003650	546723.0	Mm.301509	NM_001037169		Ppp1r2-ps3	EG546723|Gm5972	protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3746038-2	chr4	3745538	3746538	+	851.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 6 of 12)	(TG)n|Simple_repeat|Simple_repeat	31074.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	6.5	41.5	26.5	7.0	26.5	19.5
Merged-chr19-10749033-2	chr19	10748533	10749533	+	851.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_027805, intron 1 of 3)	intron (NR_027805, intron 1 of 3)	8086.0	NR_027805	403202.0	Mm.34482	NM_207529	ENSMUSG00000067577	A430093F15Rik	Gm674	RIKEN cDNA A430093F15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101813418-2	chr11	101812918	101813918	+	851.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28108.0	NM_001316365	18612.0	Mm.5025	NM_008815	ENSMUSG00000017724	Etv4	AW414408|Pea-3|Pea3	ets variant 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8636333-2	chr12	8635833	8636833	+	851.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	-37267.0	NM_177802	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-65500893-3	chr7	65500482	65501482	+	851.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81049.0	NR_131060	407810.0	Mm.249337	NR_131060	ENSMUSG00000086662	BC046251	-	cDNA sequence BC046251	ncRNA	0.0	0.0	1.0	0.0	0.0	1.5
Merged-chr1-164336074-4	chr1	164335569	164336569	+	851.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178071, intron 5 of 9)	RLTR12B|LTR|ERVK	28397.0	NM_138314	171567.0	Mm.219428	NM_138314	ENSMUSG00000026575	Nme7	D530024H21Rik|Nm23-M7|Nm23-r7	NME/NM23 family member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60772039-2	chr10	60771539	60772539	+	851.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029770, intron 13 of 16)	intron (NM_029770, intron 13 of 16)	-19257.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78173835-2	chr10	78173335	78174335	+	851.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029546, exon 18 of 21)	exon (NM_029546, exon 18 of 21)	-4067.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92466122-4	chr5	92465602	92466602	+	851.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 2 of 11)	intron (NM_007644, intron 2 of 11)	7545.0	NR_105843	102466159.0		NR_105843	ENSMUSG00000099160	Mir6415	Gm27714|mmu-mir-6415	microRNA 6415	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135822537-2	chr4	135822037	135823037	+	851.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33534.0	NM_001284196	14105.0	Mm.10229	NM_010178	ENSMUSG00000028676	Srsf10	FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-96970580-2	chr7	96970080	96971080	+	851.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153591, intron 4 of 13)	intron (NM_153591, intron 4 of 13)	19053.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79739416-2	chr15	79738916	79739916	+	851.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_194342, intron 2 of 16)	intron (NM_194342, intron 2 of 16)	3120.0	NM_194342	223697.0	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-127776247-3	chr1	127775741	127776741	+	851.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028399, intron 2 of 8)	intron (NM_028399, intron 2 of 8)	2077.0	NM_028399	72949.0	Mm.268672	NM_028399	ENSMUSG00000026349	Ccnt2	2900041I18Rik|C81304|CycT2|CycT2a|CycT2b	cyclin T2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-128549699-4	chr1	128549226	128550226	+	851.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	42573.0	NM_009911	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.0	7.0	4.5	0.5	1.5	0.0
Merged-chr2-167766568-2	chr2	167766068	167767068	+	851.4166869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75391.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-17839330-4	chr5	17838825	17839825	+	851.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	Lx5b|LINE|L1	-3429.0	NM_007643	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84770326-4	chr15	84769835	84770835	+	851.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205334, intron 12 of 12)	intron (NM_001205334, intron 12 of 12)	-50069.0	NR_040347	328576.0	Mm.400211	NR_040347	ENSMUSG00000116396	Gm20556	A430075N02	predicted gene, 20556	ncRNA	7.5	8.5	8.5	2.5	6.5	8.0
Merged-chr16-92341103-2	chr16	92340603	92341603	+	851.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18365.0	NM_008424	16509.0	Mm.299425	NM_008424	ENSMUSG00000039639	Kcne1	Isk|MinK|nmf190	potassium voltage-gated channel, Isk-related subfamily, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-104460221-4	chr2	104459728	104460728	+	851.3916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010434, intron 2 of 15)	MIRb|SINE|MIR	-31288.0	NR_035432	100316678.0		NR_035432	ENSMUSG00000084516	Mir1902	Mirn1902|mmu-mir-1902	microRNA 1902	ncRNA	4.5	4.0	0.5	0.0	2.0	0.0
Merged-chr6-53951141-3	chr6	53950629	53951629	+	851.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027749, intron 6 of 12)	intron (NM_027749, intron 6 of 12)	27544.0	NM_027749	71287.0	Mm.158654	NM_027749	ENSMUSG00000052955	Cpvl	4933436L16Rik|HVLP	carboxypeptidase, vitellogenic-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58979253-3	chr9	58978755	58979755	+	851.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008684, intron 4 of 28)	intron (NM_008684, intron 4 of 28)	57186.0	NM_001042752	18007.0	Mm.42249	NM_008684	ENSMUSG00000032340	Neo1	2610028H22Rik|AI327052|D930014N22Rik|Igdcc2	neogenin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38481963-4	chr2	38481460	38482460	+	851.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1C|DNA|hAT-Tip100	-29737.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114747668-4	chr5	114747184	114748184	+	851.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077359, intron 13 of 18)	intron (NM_001077359, intron 13 of 18)	25807.0	NM_019834	26431.0	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-116264641-4	chr8	116264145	116265145	+	851.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-240370.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61529709-4	chr14	61529203	61530203	+	851.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	27183.0	NM_025697	66674.0	Mm.282706	NM_025697	ENSMUSG00000021930	Spryd7	6330409N04Rik|Clld6	SPRY domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35246190-6	chr17	35245614	35246614	+	851.3472289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019693, intron 4 of 10)	intron (NM_019693, intron 4 of 10)	2039.0	NR_105941	102465589.0		NR_105941	ENSMUSG00000098499	Mir6975	Gm27693|mmu-mir-6975	microRNA 6975	ncRNA	1.5	20.5	7.0	1.5	21.5	1.0
Merged-chr1-16703074-2	chr1	16702577	16703577	+	851.333374	f0_c57.idr|f1_c57bl6.idr	intron (NM_001159711, intron 3 of 4)	intron (NM_001159711, intron 3 of 4)	14621.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	13.0	19.0	15.5	0.0	7.5	11.5
Merged-chr10-43452644-2	chr10	43452144	43453144	+	851.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168289, intron 7 of 7)	intron (NM_001168289, intron 7 of 7)	-26496.0	NM_199028	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-63178220-2	chr1	63177720	63178720	+	851.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028558)	promoter-TSS (NR_028558)	-803.0	NR_028558	100217464.0	Mm.484706	NR_028558	ENSMUSG00000064602	Snora41	MBI-83	small nucleolar RNA, H/ACA box 41	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36672817-2	chr16	36672317	36673317	+	851.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3c|LINE|L1	-6740.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60682396-3	chr13	60681879	60682879	+	851.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	80168.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-82715806-4	chr6	82715301	82716301	+	851.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58653.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127948322-3	chr7	127947825	127948825	+	851.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1600.0	NM_001319147	77613.0	Mm.334253	NM_001081374	ENSMUSG00000070371	Prss36	C330007D15Rik	protease, serine 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13199413-3	chr10	13198864	13199864	+	851.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-6227.0	NM_181470	353258.0	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 ribosome biogenesis factor	protein-coding	2.0	18.0	5.5	7.0	9.5	0.5
Merged-chr7-80172793-3	chr7	80172290	80173290	+	851.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-14051.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0.5	3.0	0.0	0.0	3.5	1.5
Merged-chr16-95614695-2	chr16	95614195	95615195	+	851.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-28102.0	NM_001302152	13876.0	Mm.164531	NM_133659	ENSMUSG00000040732	Erg	D030036I24Rik	ETS transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6284766-3	chr15	6284268	6285268	+	851.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15021.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8708961-2	chr19	8708461	8709461	+	851.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161413, intron 8 of 9)	intron (NM_001161413, intron 8 of 9)	4936.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64115640-1	chr15	64115140	64116140	+	851.3333130000001	f1_balb.idr	intron (NM_010026, intron 25 of 30)	intron (NM_010026, intron 25 of 30)	-55192.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0	4.5	1.0	0.0	6.0	1.5
Merged-chr4-62846725-2	chr4	62846225	62847225	+	851.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118849.0	NM_028326	72701.0	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139253466-3	chr5	139252953	139253953	+	851.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163316)	promoter-TSS (NM_001163316)	-44.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30801206-3	chr2	30800704	30801704	+	851.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198000, exon 1 of 7)	exon (NM_198000, exon 1 of 7)	533.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91986220-4	chr2	91985730	91986730	+	851.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011957, exon 10 of 12)	exon (NM_011957, exon 10 of 12)	-22667.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	5.5	0.0	10.5	0.0	1.0	4.0
Merged-chr5-96996731-3	chr5	96996220	96997220	+	851.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080708)	promoter-TSS (NM_080708)	-969.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	3.5	17.0	30.0	7.5	33.0	34.5
Merged-chr1-134305275-3	chr1	134304792	134305792	+	851.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001144855, intron 23 of 28)	intron (NM_001144855, intron 23 of 28)	15288.0	NM_031189	17928.0	Mm.16528	NM_031189	ENSMUSG00000026459	Myog	MYF4|bHLHc3|myo	myogenin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-13415673-4	chr2	13415193	13416193	+	851.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081084, intron 27 of 66)	intron (NM_001081084, intron 27 of 66)	76183.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-56647020-4	chr16	56646519	56647519	+	851.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014399, intron 12 of 27)	intron (NM_001014399, intron 12 of 27)	70431.0	NM_001357124	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	2.0	6.5	4.0	9.0	34.5	6.0
Merged-chr13-60707515-4	chr13	60707009	60708009	+	851.291626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	intron (NM_134062, intron 3 of 26)	78855.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	6.5	25.0	13.5	9.5	19.0	24.5
Merged-chr11-102604278-3	chr11	102603809	102604809	+	851.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020510)	promoter-TSS (NM_020510)	-122.0	NM_020510	57265.0	Mm.36416	NM_020510	ENSMUSG00000050288	Fzd2	AL033370|AW456835|Fz10|Fzd10|Mfz10|Mfz10a	frizzled class receptor 2	protein-coding	2.0	2.5	3.0	2.0	1.5	1.5
Merged-chr7-80029938-6	chr7	80029428	80030428	+	851.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	3700.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.5	14.0	2.5	4.0	8.0	8.0
Merged-chr13-54575151-4	chr13	54574629	54575629	+	851.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019968, exon 1 of 4)	exon (NM_019968, exon 1 of 4)	116.0	NM_019968	56795.0	Mm.89484	NM_019968	ENSMUSG00000025870	Arl10	Arl10a|Arm1	ADP-ribosylation factor-like 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75612188-2	chr7	75611688	75612688	+	851.25	f0_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 7 of 36)	intron (NM_029332, intron 7 of 36)	156654.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	21.5	13.5	0.0	8.5	5.0	3.0
Merged-chr2-60327095-2	chr2	60326595	60327595	+	851.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_013825, intron 23 of 34)	MER57C2|LTR|ERV1	-42611.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76534153-4	chr15	76533655	76534655	+	851.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4591.0	NM_013909	30840.0	Mm.275279	NM_013909	ENSMUSG00000022559	Fbxl6	AU021795|Fbl6	F-box and leucine-rich repeat protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92440867-2	chr5	92440367	92441367	+	851.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007644)	TTS (NM_007644)	-5668.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107277079-4	chr4	107276556	107277556	+	851.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355460, intron 4 of 5)	intron (NM_001355460, intron 4 of 5)	23153.0	NM_028394	72938.0	Mm.21787	NM_028394	ENSMUSG00000063172	Hspb11	2900042B11Rik|IFT25|PP25	heat shock protein family B (small), member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37130808-3	chr13	37130310	37131310	+	851.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80566.0	NM_001166391	74145.0	Mm.235105	NM_028784	ENSMUSG00000039109	F13a1	1200014I03Rik|AI462306|F13a	coagulation factor XIII, A1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36309255-3	chr1	36308771	36309771	+	851.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290727, intron 1 of 5)	intron (NM_001290727, intron 1 of 5)	1538.0	NM_001172205	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-113447486-3	chr2	113446975	113447975	+	851.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 2 of 16)	intron (NM_001285459, intron 2 of 16)	6411.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	1.5	5.0	4.0	3.0	0.0	5.0
Merged-chr9-108726287-4	chr9	108725772	108726772	+	851.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008924, intron 4 of 10)	L1MA5|LINE|L1	34129.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	2.0	3.0	0.5	4.0	10.0	5.0
Merged-chr8-125061139-3	chr8	125060667	125061667	+	851.194458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 1 of 12)	RLTR40|LTR|ERVK	6972.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	5.5	13.0	22.5	2.0	8.0	5.0
Merged-chr12-36035809-3	chr12	36035290	36036290	+	851.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025359, intron 1 of 5)	intron (NM_025359, intron 1 of 5)	6688.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	0.5	2.0	2.5	1.0	3.0	10.0
Merged-chr10-57743141-2	chr10	57742641	57743641	+	851.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41782.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-44146137-3	chr14	44145637	44146637	+	851.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	25234.0	NM_029131	74954.0	Mm.425904	NM_029131	ENSMUSG00000072595	4930503E14Rik	-	RIKEN cDNA 4930503E14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79428875-4	chr2	79428375	79429375	+	851.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001048176, exon 1 of 13)	exon (NM_001048176, exon 1 of 13)	113.0	NM_001048176	228094.0	Mm.440704	NM_001033295	ENSMUSG00000075256	Cerkl	Gm1958|Rp26	ceramide kinase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81162567-4	chr7	81162070	81163070	+	851.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004184, intron 12 of 17)	intron (NM_001004184, intron 12 of 17)	47771.0	NM_001004184	434203.0	Mm.389909	NM_001004184	ENSMUSG00000025726	Slc28a1	Cnt1	solute carrier family 28 (sodium-coupled nucleoside transporter), member 1	protein-coding	1.0	3.0	0.0	0.0	0.0	2.0
Merged-chr15-38672136-2	chr15	38671636	38672636	+	851.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_025494, intron 1 of 12)	ID_B1|SINE|B4	10232.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79963195-2	chr10	79962695	79963695	+	851.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 2 of 4)	B1_Mur3|SINE|Alu	3043.0	NM_175450	216156.0	Mm.35828	NM_175450	ENSMUSG00000035754	Wdr18	2310012I10Rik|AU044733|AW122032	WD repeat domain 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76167572-3	chr11	76167077	76168077	+	851.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_026664, intron 2 of 21)	intron (NM_026664, intron 2 of 21)	12053.0	NM_026664	68299.0	Mm.46397	NM_026664	ENSMUSG00000017288	Vps53	2010002A08Rik|2310040I21Rik|3100002B05Rik|Hccs1	VPS53 GARP complex subunit	protein-coding	0.5	3.5	1.5	0.0	2.5	2.5
Merged-chr18-46493342-4	chr18	46492846	46493846	+	851.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27530.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	2.5	1.5	2.0	3.0	1.5	2.0
Merged-chr14-104473904-2	chr14	104473404	104474404	+	851.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5905.0	NM_011143	18996.0	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-67946634-2	chr14	67946134	67947134	+	851.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13062.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123283124-3	chr4	123282647	123283647	+	851.1555789999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001356377, exon 1 of 14)	5' UTR (NM_001356377, exon 1 of 14)	236.0	NM_130881	230721.0	Mm.277091	NM_130881	ENSMUSG00000011257	Pabpc4	-	poly(A) binding protein, cytoplasmic 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-21651872-3	chr18	21651372	21652372	+	851.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081403, exon 1 of 8)	exon (NM_001081403, exon 1 of 8)	307.0	NM_001271580	74644.0	Mm.329311	NM_001271580		4930426D05Rik	-	RIKEN cDNA 4930426D05 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86686894-3	chr4	86686474	86687474	+	851.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16915.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	4.0	1.0	0.0	11.0	1.5	7.5
Merged-chr11-26789455-4	chr11	26788955	26789955	+	851.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4347.0	NR_002890	654472.0	Mm.347777	NR_002890		Gm12070	-	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.0	9.0	0.0	1.0	1.5	0.0
Merged-chr16-10384418-3	chr16	10383921	10384921	+	851.125	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099275, intron 3 of 5)	intron (NM_001099275, intron 3 of 5)	11027.0	NM_001099275	70426.0	Mm.142181	NM_001099275	ENSMUSG00000039179	Tekt5	3300001K11Rik	tektin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13969179-4	chr10	13968680	13969680	+	851.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	2801.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.0	3.5	1.0	0.0	0.0	0.0
Merged-chr13-9504517-4	chr13	9503980	9504980	+	851.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 2 of 36)	intron (NM_001081426, intron 2 of 36)	227955.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5929176-4	chr17	5928630	5929630	+	851.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025664, intron 17 of 17)	intron (NM_025664, intron 17 of 17)	-12150.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98832571-3	chr12	98832070	98833070	+	851.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081191, intron 21 of 43)	MTD|LTR|ERVL-MaLR	61548.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70656557-3	chr11	70656072	70657072	+	851.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276285)	promoter-TSS (NM_001276285)	-604.0	NM_001136062	13808.0	Mm.251322	NM_007933	ENSMUSG00000060600	Eno3	Eno-3|MSE	enolase 3, beta muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-95674240-3	chr1	95673744	95674744	+	851.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-6650.0	NM_001159745	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5732079-2	chr17	5731579	5732579	+	851.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 8 of 8)	intron (NM_146073, intron 8 of 8)	-66578.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-55356187-4	chr15	55355706	55356706	+	851.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181277, intron 5 of 47)	intron (NM_181277, intron 5 of 47)	48456.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79511706-4	chr15	79511189	79512189	+	851.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4719.0	NM_134090	105785.0	Mm.298199	NM_134090	ENSMUSG00000010830	Kdelr3	AI173274	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134526402-4	chr4	134525894	134526894	+	851.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029759, exon 7 of 7)	3' UTR (NM_029759, exon 7 of 7)	8702.0	NM_001355188	76824.0	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	11.0	27.5	10.0	0.0	26.0	7.5
Merged-chr13-60660097-3	chr13	60659598	60660598	+	851.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	57887.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	13.0	4.0	13.5	10.5	9.0	15.5
Merged-chr13-89385868-4	chr13	89385382	89386382	+	851.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-154754.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	12.0	6.0	10.5	11.0	14.0	6.5
Merged-chr2-18689765-6	chr2	18689474	18690474	+	851.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9048.0	NM_001001334	381350.0	Mm.330024	NM_001001334	ENSMUSG00000037708	Spag6	Spag6l	sperm associated antigen 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53748208-4	chr11	53747707	53748707	+	851.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15447.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119406244-3	chr13	119405734	119406734	+	851.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308506, intron 1 of 16)	intron (NM_001308506, intron 1 of 16)	2777.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32912111-3	chr19	32911627	32912627	+	851.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR31C_MM|LTR|ERVK	154550.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	31.5	79.0	57.0	17.5	18.0	12.5
Merged-chr8-70682951-4	chr8	70682459	70683459	+	851.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9728.0	NM_015816	50783.0	Mm.248188	NM_015816	ENSMUSG00000031848	Lsm4	-	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.0	0.0	0.5	2.5	0.0	0.5
Merged-chr17-50122679-3	chr17	50122161	50123161	+	851.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	67836.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31881032-3	chr2	31880476	31881476	+	851.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6305.0	NM_011836	23928.0	Mm.69566	NM_011836	ENSMUSG00000026840	Lamc3	1110064A23Rik|AI562206|AW240805	laminin gamma 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167758777-2	chr2	167758277	167759277	+	851.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67600.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27675620-2	chr17	27675120	27676120	+	851.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286744, intron 1 of 9)	intron (NM_001286744, intron 1 of 9)	-9619.0	NM_178365	23969.0	Mm.4926	NM_011861	ENSMUSG00000040276	Pacsin1	A830061D09Rik|H74|mKIAA1379|syndapin	protein kinase C and casein kinase substrate in neurons 1	protein-coding	0.0	3.0	0.5	0.0	0.0	0.0
Merged-chr13-105223111-2	chr13	105222651	105223651	+	851.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360891, intron 5 of 7)	intron (NM_001360891, intron 5 of 7)	69863.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0.0	0.0	2.0	4.5	2.0	4.0
Merged-chr1-85236264-1	chr1	85235764	85236764	+	851.0	f1_balb.idr	Intergenic	Lx5|LINE|L1	34302.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-88291481-3	chr11	88290951	88291951	+	851.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2592.0	NM_028859	74297.0	Mm.207320	NM_028859	ENSMUSG00000034031	Ccdc182	1700106J16Rik	coiled-coil domain containing 182	protein-coding	0.0	0.0	0.0	4.0	11.5	2.0
Merged-chr17-24140996-3	chr17	24140516	24141516	+	851.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286662, intron 1 of 13)	intron (NM_001286662, intron 1 of 13)	578.0	NM_011062	18607.0	Mm.10504	NM_011062	ENSMUSG00000024122	Pdpk1	Pdk1	3-phosphoinositide dependent protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84912192-2	chr8	84911692	84912692	+	851.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010062)	TTS (NM_010062)	-1143.0	NR_103491	100503676.0	Mm.437155	NR_103491	ENSMUSG00000003812	Gm38426	-	predicted gene, 38426	ncRNA	0.0	0.5	0.5	3.5	0.0	6.0
Merged-chr1-131020312-1	chr1	131019812	131020812	+	851.0	f0_c57.idr	intron (NM_010548, intron 1 of 4)	intron (NM_010548, intron 1 of 4)	467.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141463524-2	chr7	141463024	141464024	+	851.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001025103, exon 2 of 10)	exon (NM_001025103, exon 2 of 10)	380.0	NR_152220	100126795.0	Mm.386851	NR_152219	ENSMUSG00000073787	Gm10575	-	predicted gene 10575	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5733975-2	chr17	5733475	5734475	+	851.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 8 of 8)	intron (NM_146073, intron 8 of 8)	-64682.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3386672-2	chr5	3386172	3387172	+	851.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	42779.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-37973157-2	chr18	37972657	37973657	+	851.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001205336, exon 33 of 33)	3' UTR (NM_001205336, exon 33 of 33)	1460.0	NR_105947	102466779.0		NR_105947	ENSMUSG00000098608	Mir6981	Gm27609|mmu-mir-6981	microRNA 6981	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124374790-3	chr6	124374280	124375280	+	851.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10294.0	NR_131162	72268.0	Mm.420740	NR_131162		1700027F06Rik	-	RIKEN cDNA 1700027F06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-86078243-2	chr5	86077743	86078743	+	851.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310639, intron 2 of 7)	intron (NM_001310639, intron 2 of 7)	6497.0	NM_001310639	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	10.0	16.0	5.0	4.5	13.0	4.0
Merged-chr8-120717196-2	chr8	120716696	120717696	+	851.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19162.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-79760868-3	chr1	79760370	79761370	+	851.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027057, intron 1 of 4)	intron (NM_027057, intron 1 of 4)	899.0	NM_001111279	69368.0	Mm.293273	NM_027057	ENSMUSG00000073643	Wdfy1	1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435	WD repeat and FYVE domain containing 1	protein-coding	21.5	54.0	50.5	16.5	52.5	33.5
Merged-chr14-78672769-2	chr14	78672269	78673269	+	851.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081336, intron 2 of 29)	intron (NM_001081336, intron 2 of 29)	-28318.0	NR_104044	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125094594-2	chr6	125094094	125095094	+	851.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1387.0	NM_001346610	107932.0	Mm.333388	NM_145979	ENSMUSG00000063870	Chd4	9530019N15Rik|AA617397|BC005710|D6Ertd380e|Mi-2beta|mKIAA4075	chromodomain helicase DNA binding protein 4	protein-coding	1.5	12.0	3.5	10.0	2.0	1.5
Merged-chr13-7495153-2	chr13	7494653	7495653	+	851.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-707713.0	NM_001289530	94191.0	Mm.425794	NM_052977	ENSMUSG00000052551	Adarb2	Adar3|RED2	adenosine deaminase, RNA-specific, B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122111142-1	chr8	122110642	122111642	+	851.0	f0_balb.idr	Intergenic	Intergenic	133118.0	NR_106096	102466915.0		NR_106096	ENSMUSG00000099140	Mir7237	Gm27482|mmu-mir-7237	microRNA 7237	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98743508-2	chr7	98743008	98744008	+	851.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40261.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-79835982-2	chr17	79835482	79836482	+	851.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60141.0	NM_178050	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83630789-3	chr11	83630297	83631297	+	851.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18581.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181334231-3	chr2	181333732	181334732	+	851.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001882, intron 8 of 33)	B3|SINE|B2	13426.0	NR_030710	269400.0	Mm.11333	NM_001001882	ENSMUSG00000038685	Rtel1	AI451565|AW540478|Rtel	regulator of telomere elongation helicase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-124715311-2	chr4	124714811	124715811	+	851.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029157, exon 2 of 17)	exon (NM_029157, exon 2 of 17)	450.0	NM_029157	75062.0	Mm.25779	NM_029157	ENSMUSG00000028902	Sf3a3	4930512K19Rik|60kDa	splicing factor 3a, subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-58445194-2	chr10	58444694	58445694	+	851.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-1658.0	NM_011240	19386.0	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126431159-2	chr4	126430659	126431659	+	851.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1617.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-85305206-3	chr16	85304693	85305693	+	851.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-131486.0	NM_001198826	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	24.0	5.5	19.5	3.0	8.5	1.0
Merged-chr16-33658950-3	chr16	33658432	33659432	+	851.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 11 of 11)	(CA)n|Simple_repeat|Simple_repeat	-25534.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-130247233-3	chr10	130246721	130247721	+	851.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	32917.0	NM_001329489	11923.0	Mm.10695	NM_007501	ENSMUSG00000048015	Neurod4	AI846749|ATH-3|Atoh3|MATH-3|Math3|bHLHa4	neurogenic differentiation 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122766219-2	chr5	122765719	122766719	+	851.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199676, intron 1 of 16)	B4|SINE|B4	13191.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160006776-2	chr2	160006276	160007276	+	851.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-9877.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	6.0	4.0	0.0	2.0	3.5	1.5
Merged-chr8-126693803-3	chr8	126693282	126694282	+	851.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-100346.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.0	2.5	3.0	0.0	2.5	5.5
Merged-chr15-14184135-1	chr15	14183635	14184635	+	851.0	f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-1010460.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.0	0.0	2.0	0.0	0.0	2.0
Merged-chr19-43522205-2	chr19	43521691	43522691	+	851.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010324, intron 1 of 8)	intron (NM_010324, intron 1 of 8)	2414.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	1.0	18.0	0.5	0.0	7.0	2.5
Merged-chr8-116983215-2	chr8	116982715	116983715	+	851.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026572, intron 4 of 4)	intron (NM_026572, intron 4 of 4)	-4256.0	NM_001357255	69528.0	Mm.272846	NM_027103	ENSMUSG00000031847	1700030J22Rik	-	RIKEN cDNA 1700030J22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-71167839-2	chr9	71167339	71168339	+	851.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110517)	promoter-TSS (NR_110517)	-937.0	NR_110517	102635087.0	Mm.444536	NR_110517	ENSMUSG00000111429	Gm32511	-	predicted gene, 32511	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152557740-1	chr3	152557240	152558240	+	851.0	f0_balb.idr	intron (NM_001355635, intron 6 of 8)	intron (NM_001355635, intron 6 of 8)	-109173.0	NR_040386	99542.0	Mm.394921	NR_040386	ENSMUSG00000097745	AI115009	-	expressed sequence AI115009	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27625919-2	chr3	27625419	27626419	+	851.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 3 of 26)	intron (NM_001356953, intron 3 of 26)	-40924.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5543482-3	chr11	5542998	5543998	+	851.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1281.0	NM_134033	104479.0	Mm.210403	NM_134033	ENSMUSG00000020482	Ccdc117	1110004K02Rik|1700026O03Rik|AU018638|AU042822|AV173073|BC018601	coiled-coil domain containing 117	protein-coding	0.0	0.0	1.5	1.5	1.5	0.0
Merged-chr14-21740971-2	chr14	21740471	21741471	+	851.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001007268, intron 5 of 7)	intron (NM_001007268, intron 5 of 7)	1908.0	NM_013849	27389.0	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155710764-4	chr2	155710274	155711274	+	851.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145537, intron 8 of 10)	intron (NM_145537, intron 8 of 10)	-18390.0	NM_001163452	56407.0	Mm.234944	NM_019828	ENSMUSG00000038324	Trpc4ap	4833429F06Rik|D2Ertd113e|Trrp4ap|mFLJ00177|truss	transient receptor potential cation channel, subfamily C, member 4 associated protein	protein-coding	2.0	5.5	2.5	2.5	0.0	1.5
Merged-chr5-105825692-2	chr5	105825192	105826192	+	851.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50876.0	NR_030777	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	0.0	3.5	0.0	0.0	0.0	0.0
Merged-chr19-42599829-1	chr19	42599329	42600329	+	851.0	f1_balb.idr	intron (NM_001164311, intron 11 of 14)	intron (NM_001164311, intron 11 of 14)	12977.0	NM_001164311	67573.0	Mm.178767	NM_053083	ENSMUSG00000025185	Loxl4	4833426I20Rik|Loxc	lysyl oxidase-like 4	protein-coding	0.0	2.0	1.0	0.0	3.0	0.0
Merged-chr2-52875917-2	chr2	52875417	52876417	+	851.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	MIRb|SINE|MIR	18049.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6056035-1	chr19	6055535	6056535	+	851.0	f1_balb.idr	intron (NM_026246, intron 2 of 3)	B2_Mm1t|SINE|B2	1716.0	NM_026246	18120.0	Mm.181290	NM_026246	ENSMUSG00000007338	Mrpl49	4833419D18Rik|Nof1	mitochondrial ribosomal protein L49	protein-coding	1.5	0.0	0.5	0.0	2.5	1.0
Merged-chr6-87543504-4	chr6	87543026	87544026	+	850.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-10267.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54072682-4	chr13	54072192	54073192	+	850.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027324, intron 1 of 10)	intron (NM_027324, intron 1 of 10)	847.0	NM_027324	14057.0	Mm.134191	NM_027324	ENSMUSG00000021474	Sfxn1	2810002O05Rik|A930015P12Rik|f	sideroflexin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73096714-4	chr17	73096210	73097210	+	850.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11275.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22125023-4	chr8	22124547	22125547	+	850.9249880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347318)	promoter-TSS (NM_001347318)	20.0	NM_177898	330721.0	Mm.113940	NM_177898	ENSMUSG00000037738	Nek5	6530411J22|BB049667	NIMA (never in mitosis gene a)-related expressed kinase 5	protein-coding	2.0	0.0	1.0	0.0	1.5	9.0
Merged-chr10-94357684-3	chr10	94357141	94358141	+	850.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	45692.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36705941-4	chr5	36705432	36706432	+	850.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9911.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	2.5	7.0	0.0	1.5	1.0	3.5
Merged-chr13-70659870-4	chr13	70659353	70660353	+	850.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22219.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-141005410-2	chr5	141004910	141005910	+	850.9166869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-4814.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35559501-4	chr9	35559000	35560000	+	850.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_023292, exon 2 of 5)	5' UTR (NM_023292, exon 2 of 5)	940.0	NM_023292	67049.0	Mm.425574	NM_023292	ENSMUSG00000032103	Pus3	2610020J05Rik|5730412F04Rik	pseudouridine synthase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134927874-2	chr4	134927374	134928374	+	850.900024	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023665)	TTS (NM_023665)	-3106.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141834708-4	chr4	141834245	141835245	+	850.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8740.0	NM_007919	13706.0	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	27.0	5.5	6.5	5.5	22.5	7.0
Merged-chr4-155144451-3	chr4	155143940	155144940	+	850.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081100, intron 13 of 13)	intron (NM_001081100, intron 13 of 13)	57836.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	9.0	0.0	0.5	6.0	0.0	0.5
Merged-chr2-51304915-3	chr2	51304409	51305409	+	850.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63078.0	NR_040636	329404.0	Mm.417725	NR_040636	ENSMUSG00000086349	Gm13497	A730015I17	predicted gene 13497	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62367862-3	chr9	62367395	62368395	+	850.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 1 of 6)	intron (NM_009672, intron 1 of 6)	26552.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-174312321-3	chr2	174311821	174312821	+	850.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310085, intron 2 of 12)	intron (NM_001310085, intron 2 of 12)	14462.0	NM_001310085	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-14129201-3	chr16	14128707	14129707	+	850.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081154, intron 17 of 26)	intron (NM_001081154, intron 17 of 26)	30067.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-52817338-4	chr1	52816823	52817823	+	850.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008384, intron 1 of 5)	CpG	365.0	NM_008384	16329.0	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	11.5	6.5	2.5	12.5	4.0	3.5
Merged-chr13-111824347-4	chr13	111823827	111824827	+	850.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-15334.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	2.5	0.0	1.0	6.5	3.0	2.0
Merged-chr15-79830538-2	chr15	79830049	79831049	+	850.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013362, intron 4 of 8)	intron (NM_001013362, intron 4 of 8)	3784.0	NM_001013360	504193.0	Mm.38438	NM_029079	ENSMUSG00000089837	Npcd	Cbx6-Nptxr	neuronal pentraxin chromo domain	protein-coding	3.0	0.0	1.0	0.5	1.5	0.0
Merged-chr16-32853652-2	chr16	32853149	32854149	+	850.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172615, intron 2 of 18)	intron (NM_172615, intron 2 of 18)	14717.0	NM_001200038	100502698.0	Mm.327319	NM_172615	ENSMUSG00000035629	Rubcn	1700021K19Rik|5330403K09|Rubicon|mKIAA0226	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	protein-coding	13.0	20.0	23.0	8.5	3.0	5.0
Merged-chr17-47499170-4	chr17	47498645	47499645	+	850.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356290, intron 2 of 7)	RMER6A|LTR|ERVK	3146.0	NM_001356290	63856.0	Mm.275901	NM_022015	ENSMUSG00000023980	Taf8	AW260255|Tbn	TATA-box binding protein associated factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-53212924-3	chr5	53212408	53213408	+	850.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172710, intron 1 of 23)	intron (NM_172710, intron 1 of 23)	544.0	NM_172710	231238.0	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150626563-4	chr4	150626082	150627082	+	850.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25592.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-57548828-3	chr14	57548283	57549283	+	850.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026526)	TTS (NM_026526)	22786.0	NM_026526	68043.0	Mm.45225	NM_026526	ENSMUSG00000021951	Eef1akmt1	2510005D08Rik|AW045965|Ayu21-96|Gt(pU21)96Imeg|GtAyu21-96|N6amt2	EEF1A alpha lysine methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36742635-4	chr5	36742101	36743101	+	850.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6078.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35984079-4	chr2	35983576	35984576	+	850.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4452.0	NM_029774	74410.0	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147928594-6	chr4	147928075	147929075	+	850.8214109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011122, intron 5 of 18)	intron (NM_011122, intron 5 of 18)	8201.0	NM_011122	18822.0	Mm.23951	NM_011122	ENSMUSG00000019055	Plod1	2410042F05Rik|AI854890|AV007929|Lh1|Plod	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-129634551-3	chr3	129634027	129635027	+	850.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_130450, exon 5 of 5)	3' UTR (NM_130450, exon 5 of 5)	90559.0	NM_001310737	13645.0	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	0.0	0.0	0.0	0.0	1.5	0.0
Merged-chr8-69938499-4	chr8	69937995	69938995	+	850.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 2 of 12)	intron (NM_001286450, intron 2 of 12)	35888.0	NM_001113346	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	0.0	17.5	9.5	4.0	15.0	15.5
Merged-chr17-27051767-4	chr17	27051262	27052262	+	850.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5542.0	NM_080553	16440.0	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76247792-3	chr15	76247298	76248298	+	850.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105918)	promoter-TSS (NR_105918)	-393.0	NR_105918	102465575.0		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-94284792-3	chr6	94284293	94285293	+	850.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286784)	promoter-TSS (NM_001286784)	-876.0	NM_001286785	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	2.0	7.0	2.5	1.5	9.0	7.5
Merged-chr10-80117203-6	chr10	80116732	80117732	+	850.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301853, intron 1 of 8)	CpG	1429.0	NM_001301854	20869.0	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126141192-3	chr4	126140737	126141737	+	850.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001145827)	TTS (NM_001145827)	-6766.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-140767108-3	chr6	140766586	140767586	+	850.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	140201.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97700335-4	chr11	97699693	97700693	+	850.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163307)	promoter-TSS (NM_001163307)	304.0	NM_009545	22658.0	Mm.2418	NM_009545	ENSMUSG00000018537	Pcgf2	Mel18|Rnf110|Zfp144|mel-18	polycomb group ring finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-18639158-3	chr19	18638653	18639653	+	850.755554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145497, intron 2 of 8)	intron (NM_145497, intron 2 of 8)	7137.0	NM_145497	225994.0	Mm.211595	NM_145497	ENSMUSG00000037847	Nmrk1	AA408380|D630020N23Rik|Nrk1	nicotinamide riboside kinase 1	protein-coding	4.5	0.5	7.5	2.5	6.5	6.0
Merged-chr15-99415970-4	chr15	99415463	99416463	+	850.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	22744.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0.5	11.5	1.0	0.5	0.5	3.0
Merged-chr16-18424814-2	chr16	18424314	18425314	+	850.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111062, intron 1 of 5)	intron (NM_001111062, intron 1 of 5)	-1603.0	NM_001353143	26462.0	Mm.390906	NM_013711	ENSMUSG00000075704	Txnrd2	AA118373|ESTM573010|TGR|Tr3|Trxr2|Trxrd2	thioredoxin reductase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-55080268-4	chr3	55079752	55080752	+	850.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040593, intron 6 of 7)	intron (NR_040593, intron 6 of 7)	25010.0	NR_040593	70970.0	Mm.251485	NR_040593	ENSMUSG00000106589	4931419H13Rik	-	RIKEN cDNA 4931419H13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75588558-2	chr10	75588058	75589058	+	850.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011820)	promoter-TSS (NM_011820)	-823.0	NM_011820	23887.0	Mm.257927	NM_011820	ENSMUSG00000006344	Ggt5	AI551243|GGL|GGT-REL|Ggtla1	gamma-glutamyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83686468-4	chr11	83685967	83686967	+	850.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-17589.0	NM_001081957	100034251.0	Mm.24097	NM_001081957	ENSMUSG00000069792	Wfdc17	Amwap|Gm11428	WAP four-disulfide core domain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78600230-4	chr11	78599725	78600725	+	850.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008702, intron 3 of 10)	intron (NM_008702, intron 3 of 10)	-49490.0	NM_133706	69071.0	Mm.29431	NM_133706	ENSMUSG00000037278	Tmem97	1810014L12Rik|AI115531|AL022956|D11Bhm182e	transmembrane protein 97	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36661785-5	chr16	36661247	36662247	+	850.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	MLT1C|LTR|ERVL-MaLR	4330.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109342228-3	chr3	109341709	109342709	+	850.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 1 of 26)	intron (NM_020505, intron 1 of 26)	1526.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	10.0	12.0	6.5	10.5	11.5	6.5
Merged-chr12-81746612-4	chr12	81746156	81747156	+	850.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001174107, intron 2 of 10)	L1MB8|LINE|L1	34514.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83808234-4	chr17	83807740	83808740	+	850.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 16 of 16)	intron (NM_054082, intron 16 of 16)	38550.0	NM_025325	107766.0	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150903906-3	chr2	150903374	150904374	+	850.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356549, intron 1 of 13)	intron (NM_001356549, intron 1 of 13)	857.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8390640-3	chr17	8390111	8391111	+	850.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161832, intron 2 of 10)	intron (NM_001161832, intron 2 of 10)	-1143.0	NR_045795	100504601.0	Mm.365131	NR_045795	ENSMUSG00000097796	Gm16702	AU016609	predicted gene, 16702	ncRNA	4.0	0.0	1.0	2.5	0.5	0.5
Merged-chr13-92986917-3	chr13	92986406	92987406	+	850.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86398.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118379639-6	chr11	118379109	118380109	+	850.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22350.0	NM_011150	19039.0	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-150395812-3	chr1	150395331	150396331	+	850.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133780, intron 3 of 51)	RMER6B|LTR|ERVK	-2751.0	NM_001357579	226499.0	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27000298-3	chr17	26999790	27000790	+	850.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17745.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102754023-4	chr2	102753500	102754500	+	850.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077514, intron 6 of 10)	intron (NM_001077514, intron 6 of 10)	-7240.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-34489371-3	chr14	34488878	34489878	+	850.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009758, intron 1 of 12)	L2|LINE|L2	13168.0	NM_009758	12166.0	Mm.237825	NM_009758	ENSMUSG00000021796	Bmpr1a	1110037I22Rik|ALK-3|ALK3|AU045487|BMPR-1A|BMPR-IA|Bmpr|SKR5	bone morphogenetic protein receptor, type 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25402666-3	chr14	25402142	25403142	+	850.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56543.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122874062-3	chr6	122873501	122874501	+	850.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026267)	promoter-TSS (NM_026267)	-556.0	NM_026267	67602.0	Mm.288114	NM_026267	ENSMUSG00000030327	Necap1	1200016B17Rik|AI747569|mFLJ00061	NECAP endocytosis associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-24592535-4	chr12	24592027	24593027	+	850.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145890, intron 6 of 13)	intron (NM_145890, intron 6 of 13)	11808.0	NM_145890	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	2.0	17.5	39.5	2.0	23.0	35.0
Merged-chr11-115703146-2	chr11	115702543	115703543	+	850.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008163, intron 1 of 5)	B1_Mus2|SINE|Alu	-3115.0	NM_001313936	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73594222-2	chr7	73593722	73594722	+	850.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35827.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30282050-2	chr7	30281543	30282543	+	850.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_144498, intron 2 of 2)	RLTR19|LTR|ERVK	-1622.0	NM_146186	233064.0	Mm.271677	NM_146186	ENSMUSG00000037020	Wdr62	2310038K02Rik|b2b1508Clo	WD repeat domain 62	protein-coding	12.5	20.5	14.0	26.0	75.0	45.5
Merged-chr7-31099709-2	chr7	31099145	31100145	+	850.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001276269, exon 11 of 13)	exon (NM_001276269, exon 11 of 13)	11352.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16012786-2	chr7	16012289	16013289	+	850.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13294.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	7.0	8.5	9.5	7.5	3.0	1.0
Merged-chr2-102757364-4	chr2	102756868	102757868	+	850.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077514, intron 7 of 10)	intron (NM_001077514, intron 7 of 10)	-10608.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118120194-2	chr7	118119694	118120694	+	850.625	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019419, exon 6 of 6)	3' UTR (NM_019419, exon 6 of 6)	-4047.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-80335276-4	chr1	80334751	80335751	+	850.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016716, intron 1 of 15)	intron (NM_016716, intron 1 of 15)	5439.0	NM_001313728	26554.0	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101427904-4	chr7	101427354	101428354	+	850.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008548, intron 1 of 30)	intron (NM_001008548, intron 1 of 30)	6163.0	NR_152192	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	1.0	0.0	0.5	0.0	0.0	0.0
Merged-chr17-26511525-3	chr17	26511014	26512014	+	850.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3042.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	11.0	17.5	3.5	9.0	11.5	7.0
Merged-chr8-105346622-3	chr8	105346118	105347118	+	850.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	1352.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53520754-4	chr11	53520253	53521253	+	850.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361969, intron 1 of 9)	intron (NM_001361969, intron 1 of 9)	565.0	NM_001361969	20362.0	Mm.274399	NM_033144	ENSMUSG00000018398	Sept8	AW046166|Sepl	septin 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54758601-4	chr13	54758116	54759116	+	850.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_033610)	TTS (NM_033610)	7979.0	NM_001362407	104069.0	Mm.200843	NM_033610	ENSMUSG00000034891	Sncb	AI838531|betaSYN	synuclein, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120167673-4	chr10	120167161	120168161	+	850.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359184, intron 6 of 11)	RLTR28|LTR|ERVL	33936.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.0	3.0	5.0	0.0	1.0	0.0
Merged-chr17-17826156-5	chr17	17825666	17826666	+	850.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4022.0	NR_029536	387230.0		NR_029536	ENSMUSG00000065396	Mir99b	Mirn99b|mmu-mir-99b	microRNA 99b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137103077-3	chr5	137102553	137103553	+	850.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13154.0	NM_201373	384309.0	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.0	2.5	2.0	2.5	2.0	1.0
Merged-chr6-54668041-3	chr6	54667450	54668450	+	850.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13C2|LTR|ERVK	-13674.0	NM_001289741	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29501189-5	chr19	29500648	29501648	+	850.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	20839.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-42480349-3	chr17	42479840	42480840	+	850.5277710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355270, intron 2 of 2)	RCHARR1|DNA|hAT-Charlie	130973.0	NM_181753	353344.0	Mm.184937	NM_181753	ENSMUSG00000043972	Opn5	Gpr136|Neuropsin|PGR12|TMEM13	opsin 5	protein-coding	1.0	0.0	3.5	3.5	0.5	0.0
Merged-chr4-125066109-2	chr4	125065609	125066609	+	850.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175223)	promoter-TSS (NM_175223)	-452.0	NM_175223	75563.0	Mm.50304	NM_175223	ENSMUSG00000042707	Dnali1	1700023A09Rik|AW049135	dynein, axonemal, light intermediate polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34372190-2	chr5	34371690	34372690	+	850.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243123, intron 1 of 20)	intron (NM_001243123, intron 1 of 20)	2257.0	NM_001243123	231128.0	Mm.286885	NM_001030306	ENSMUSG00000037210	Fam193a	-	family with sequence similarity 193, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105705324-1	chr3	105704824	105705824	+	850.5	f0_balb.idr	promoter-TSS (NM_001163356)	promoter-TSS (NM_001163356)	-134.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120451672-4	chr6	120451171	120452171	+	850.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11526.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75697419-2	chr2	75696919	75697919	+	850.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132727, intron 1 of 1)	intron (NR_132727, intron 1 of 1)	7244.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	17.0	40.0	31.0	12.0	29.5	16.0
Merged-chr13-51329882-2	chr13	51329382	51330382	+	850.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78736.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47447592-2	chr19	47447092	47448092	+	850.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	L1MB8|LINE|L1	16819.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	15.5	55.5	25.5	13.5	40.0	32.5
Merged-chr7-132858406-3	chr7	132857884	132858884	+	850.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198017)	promoter-TSS (NM_198017)	-841.0	NM_198017	109359.0	Mm.274824	NM_198017	ENSMUSG00000030965	Abraxas2	AA589499|AI853413|Abro1|C430003P19Rik|Fam175b	BRISC complex subunit	protein-coding	7.5	5.5	1.5	5.5	2.5	2.0
Merged-chr7-47013958-2	chr7	47013458	47014458	+	850.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-5544.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40256941-4	chr10	40256438	40257438	+	850.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359493, intron 2 of 5)	intron (NM_001359493, intron 2 of 5)	624.0	NM_001359493	67371.0	Mm.64104	NM_026113	ENSMUSG00000019837	Gtf3c6	2410016F19Rik|AU019813	general transcription factor IIIC, polypeptide 6, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153144592-2	chr2	153144092	153145092	+	850.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 11 of 12)	intron (NM_001172117, intron 11 of 12)	-16709.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84522552-2	chr2	84522052	84523052	+	850.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15679.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83994399-3	chr8	83993882	83994882	+	850.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008854, intron 8 of 9)	B1_Mur4|SINE|Alu	-3290.0	NM_001081415	666704.0	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	15.5	34.0	22.5	10.5	10.5	12.5
Merged-chr5-121451887-4	chr5	121451404	121452404	+	850.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029912)	promoter-TSS (NM_029912)	570.0	NM_026129	67397.0	Mm.154570	NM_026129	ENSMUSG00000029616	Erp29	1200015M03Rik|2810446M09Rik|AW209030|Erp28|Erp31|PDI-Db	endoplasmic reticulum protein 29	protein-coding	61.0	170.0	81.5	55.5	162.0	95.0
Merged-chr9-100399199-2	chr9	100398700	100399700	+	850.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87273.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	2.5	1.5	0.5	1.5	0.5	0.5
Merged-chr1-62719438-2	chr1	62718938	62719938	+	850.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 2 of 16)	L3|LINE|CR1	16121.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-75658686-4	chr12	75658204	75659204	+	850.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028203, intron 1 of 1)	MTC|LTR|ERVL-MaLR	10833.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65959726-2	chr5	65959226	65960226	+	850.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-7398.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117878365-2	chr10	117877865	117878865	+	850.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32391.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70779846-2	chr8	70779330	70780330	+	850.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_199308, exon 26 of 26)	exon (NM_199308, exon 26 of 26)	2968.0	NR_029440	72093.0	Mm.271208	NR_029440		2010320M18Rik	-	RIKEN cDNA 2010320M18 gene	ncRNA	1.0	0.0	0.0	1.0	3.0	0.0
Merged-chr3-37502751-4	chr3	37502258	37503258	+	850.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021343, intron 14 of 15)	intron (NM_021343, intron 14 of 15)	82808.0	NM_021343	57815.0	Mm.172679	NM_021343	ENSMUSG00000027722	Spata5	2510048F20Rik|C78064|Spaf	spermatogenesis associated 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43339647-2	chr7	43339147	43340147	+	850.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11694.0	NM_001271019	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-55182536-4	chr6	55182042	55183042	+	850.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-7552.0	NM_009349	21743.0	Mm.299	NM_009349	ENSMUSG00000003477	Inmt	Temt	indolethylamine N-methyltransferase	protein-coding	3.5	6.0	6.0	0.0	2.0	0.5
Merged-chr18-52909357-4	chr18	52908843	52909843	+	850.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199151, intron 11 of 11)	intron (NM_001199151, intron 11 of 11)	141199.0	NM_001199154	67847.0	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129830446-4	chr4	129829945	129830945	+	850.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	9737.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	57.0	211.5	148.5	43.5	169.5	79.5
Merged-chr4-42948143-2	chr4	42947643	42948643	+	850.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1724.0	NM_001355438	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-14216784-3	chr10	14216249	14217249	+	850.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	250370.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.0	2.0	5.0	0.0	3.0	3.5
Merged-chr1-136579524-2	chr1	136579014	136580014	+	850.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-45387.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87321831-2	chr17	87321331	87322331	+	850.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 6 of 19)	B2_Mm2|SINE|B2	38945.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84813254-4	chr8	84812772	84813772	+	850.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9551.0	NM_201227	23863.0	Mm.304252	NM_201227	ENSMUSG00000053226	Dand5	Cerl-2|Cerl2|Cerr2|Dte|GREM3|coco	DAN domain family member 5, BMP antagonist	protein-coding	6.0	15.5	5.5	2.5	7.5	7.5
Merged-chr6-122801583-12	chr6	122800996	122801996	+	850.493042	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18688.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-68056608-4	chr3	68056241	68057241	+	850.4874880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177585)	TTS (NM_177585)	-8061.0	NM_001113420	30953.0	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-117881437-4	chr6	117880921	117881921	+	850.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER68|LTR|ERVL	18540.0	NM_001001792	22685.0	Mm.249661	NM_008616	ENSMUSG00000042097	Zfp239	Mok-2|Mok2|Znf239	zinc finger protein 239	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-100395895-4	chr9	100395405	100396405	+	850.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90568.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	10.5	0.0	7.0	0.0	4.0	0.5
Merged-chr5-138848272-4	chr5	138847752	138848752	+	850.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28172.0	NM_001195128	384244.0	Mm.485002	NM_001195128	ENSMUSG00000094504	Gm5294	EG384244	predicted gene 5294	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94158992-5	chr13	94158535	94159535	+	850.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	101239.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24312886-3	chr16	24312381	24313381	+	850.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80469.0	NM_178665	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111095282-3	chr8	111094782	111095782	+	850.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198308, intron 1 of 17)	intron (NM_198308, intron 1 of 17)	537.0	NM_198308	319518.0	Mm.28350	NM_198308	ENSMUSG00000033624	Pdpr	4930402E16Rik|AU018056|mKIAA1990	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8989043-4	chr3	8988545	8989545	+	850.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	ORR1E|LTR|ERVL-MaLR	15159.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	2.5	10.5	14.5	3.0	16.0	15.5
Merged-chr12-76534508-6	chr12	76534020	76535020	+	850.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	960.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14295609-4	chr2	14295148	14296148	+	850.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 15 of 29)	intron (NM_008625, intron 15 of 29)	34645.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-143231063-4	chr6	143230575	143231575	+	850.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-14813.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6925112-2	chr19	6924612	6925612	+	850.4166869999999	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008431)	TTS (NM_008431)	268.0	NM_001039494	67077.0	Mm.251306	NM_001039494	ENSMUSG00000050623	Catsperz	1700019N12Rik|A430107B04Rik|MLZ-622|Tex40	cation channel sperm associated auxiliary subunit zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-119457388-3	chr1	119456892	119457892	+	850.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35144.0	NM_008381	16324.0	Mm.3092	NM_008381	ENSMUSG00000037035	Inhbb	-	inhibin beta-B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52712048-2	chr13	52711548	52712548	+	850.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45157.0	NR_027893	105404.0	Mm.184173	NR_027893		BB123696	-	expressed sequence BB123696	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35059046-4	chr17	35058556	35059556	+	850.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190449)	promoter-TSS (NM_001190449)	21.0	NM_016765	51793.0	Mm.1457	NM_016765	ENSMUSG00000007039	Ddah2	1110003M04Rik|AU019324|AW413173|DDAH-2|DDAHII|Ddah|G6a|NG30	dimethylarginine dimethylaminohydrolase 2	protein-coding	4.0	10.5	3.5	10.5	8.5	3.0
Merged-chr15-99457220-4	chr15	99456698	99457698	+	850.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001884, intron 1 of 12)	CpG	550.0	NM_001001884	380969.0	Mm.22915	NM_001001884	ENSMUSG00000023009	Nckap5l	C230021P08Rik|Cep169	NCK-associated protein 5-like	protein-coding	14.0	20.5	16.5	9.5	34.5	17.5
Merged-chr9-96322833-3	chr9	96322337	96323337	+	850.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001184710, exon 10 of 10)	3' UTR (NM_001184710, exon 10 of 10)	40878.0	NM_001357213	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0.5	10.0	3.0	0.5	0.0	5.5
Merged-chr6-17749747-3	chr6	17749263	17750263	+	850.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	intron (NM_022332, intron 1 of 15)	593.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80880482-4	chr10	80879955	80880955	+	850.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081688, intron 1 of 17)	intron (NM_001081688, intron 1 of 17)	639.0	NM_001081688	432478.0	Mm.235302	NM_001081688	ENSMUSG00000059406	Tmprss9	Serase-1B	transmembrane protease, serine 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86163007-4	chr12	86162424	86163424	+	850.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001199843)	TTS (NM_001199843)	-6417.0	NR_046081	328136.0	Mm.312050	NR_046081	ENSMUSG00000097543	Gm805	-	predicted gene 805	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30880454-2	chr7	30879984	30880984	+	850.375	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102722)	promoter-TSS (NR_102722)	-142.0	NM_001043317	12483.0	Mm.260994	NM_009845	ENSMUSG00000030577	Cd22	A530093D23|Lyb-8|Lyb8	CD22 antigen	protein-coding	8.0	13.0	3.0	0.5	0.0	0.0
Merged-chr15-89428767-2	chr15	89428267	89429267	+	850.333374	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_004843, exon 3 of 27)	non-coding (NR_004843, exon 3 of 27)	1160.0	NR_037154	12651.0	Mm.485045	NM_007692	ENSMUSG00000022617	Chkb	Chetk|Chkl|Ck|Ck/Ek|Ck/Ek-beta|Ckb|Ckekb|Ek	choline kinase beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107830033-2	chr13	107829499	107830499	+	850.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	60065.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	9.0	16.0	14.0	5.5	19.5	21.0
Merged-chr11-98937175-3	chr11	98936681	98937681	+	850.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177302)	promoter-TSS (NM_001177302)	-515.0	NM_009024	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52042677-3	chr13	52042180	52043180	+	850.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54061.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-68691363-3	chr3	68690882	68691882	+	850.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008351)	promoter-TSS (NM_008351)	-42.0	NM_008351	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-49359036-3	chr2	49358528	49359528	+	850.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92458.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23889265-1	chr17	23888765	23889765	+	850.3333130000001	f1_balb.idr	Intergenic	(TTC)n|Simple_repeat|Simple_repeat	8389.0	NM_019910	13184.0	Mm.371556	NM_019910	ENSMUSG00000096445	Dcpp1	BC005655|C86550|Dcpp|Dcpp-1|p20	demilune cell and parotid protein 1	protein-coding	1.5	3.5	10.0	0.0	0.0	0.0
Merged-chr11-94391034-3	chr11	94390605	94391605	+	850.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	1871.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34857828-3	chr18	34857339	34858339	+	850.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3368.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62120976-3	chr15	62120469	62121469	+	850.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 2 of 6)	intron (NR_132746, intron 2 of 6)	81712.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145194201-4	chr4	145193716	145194716	+	850.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 1 of 69)	intron (NM_001276465, intron 1 of 69)	789.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80154165-4	chr12	80153641	80154641	+	850.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21297.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148874685-3	chr2	148874210	148875210	+	850.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009976, intron 1 of 2)	intron (NM_009976, intron 1 of 2)	802.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80589547-3	chr10	80589029	80590029	+	850.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145421, intron 1 of 4)	RSINE1|SINE|B4	812.0	NM_145421	216169.0	Mm.29802	NM_145421	ENSMUSG00000003346	Abhd17a	1700013O15Rik|BC005632|D10Bwg1364e|Fam108a	abhydrolase domain containing 17A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19173111-3	chr7	19172589	19173589	+	850.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3332.0	NM_001347582	72205.0	Mm.154121	NM_028153	ENSMUSG00000040811	Eml2	1600029N02Rik|EMAP-2	echinoderm microtubule associated protein like 2	protein-coding	4.0	0.0	1.0	0.0	1.5	1.0
Merged-chr2-166564081-3	chr2	166563576	166564576	+	850.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152154)	promoter-TSS (NR_152154)	-446.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127521963-3	chr10	127521412	127522412	+	850.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028230, intron 1 of 11)	intron (NM_028230, intron 1 of 11)	532.0	NM_001252316	108037.0	Mm.29890	NM_028230	ENSMUSG00000025403	Shmt2	2700043D08Rik|AA408223|AA986903|SHMT	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding	0.0	1.0	1.5	0.0	0.0	2.5
Merged-chr19-34612830-3	chr19	34612308	34613308	+	850.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001005858, exon 2 of 2)	3' UTR (NM_001005858, exon 2 of 2)	4851.0	NM_001005858	667370.0	Mm.271850	NM_001005858	ENSMUSG00000062488	Ifit3b	I830012O16Rik	interferon-induced protein with tetratricopeptide repeats 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-36888358-3	chr10	36887831	36888831	+	850.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86213.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18987711-3	chr2	18987230	18988230	+	850.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	RMER4B|LTR|ERVK	10391.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-31877786-3	chr11	31877262	31878262	+	850.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026252, intron 1 of 9)	intron (NM_026252, intron 1 of 9)	6822.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	4.0	10.0	4.5	6.5	15.5	4.5
Merged-chr2-15029176-3	chr2	15028684	15029684	+	850.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165941, intron 8 of 11)	RLTR44B|LTR|ERVK	20128.0	NM_001165942	74455.0	Mm.478923	NM_028950	ENSMUSG00000026707	Nsun6	4933403D21Rik|4933414E04Rik|NOPD1	NOL1/NOP2/Sun domain family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62127912-3	chr11	62127411	62128411	+	850.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029936, intron 2 of 12)	intron (NM_001029936, intron 2 of 12)	50887.0	NM_001029936	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-169929845-5	chr2	169929342	169930342	+	850.3133539999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33345.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	17.0	31.0	32.0	8.5	17.0	14.5
Merged-chr13-9846974-4	chr13	9846470	9847470	+	850.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81649.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26095438-4	chr17	26094946	26095946	+	850.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019731)	promoter-TSS (NM_019731)	24.0	NM_019731	56520.0	Mm.41787	NM_019731	ENSMUSG00000024177	Nme4	2610027N22Rik|2810024O08Rik|5730493H09Rik|NM23-M4|Nm23M4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118908423-3	chr9	118907925	118908925	+	850.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18111.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0.0	2.0	0.0	1.5	0.0	0.0
Merged-chr4-3804961-2	chr4	3804461	3805461	+	850.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30694.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102087242-2	chr11	102086742	102087742	+	850.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_016695, intron 1 of 12)	CpG	1273.0	NM_016695	50997.0	Mm.36242	NM_016695	ENSMUSG00000017314	Mpp2	D11Bwg0652e|Dlg2|Dlgh2|Pals4	membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118180421-2	chr11	118179921	118180921	+	850.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 9 of 12)	intron (NM_001112700, intron 9 of 12)	32321.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6411876-4	chr11	6411385	6412385	+	850.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3985.0	NM_008907	268373.0	Mm.5246	NM_008907	ENSMUSG00000071866	Ppia	2700098C05|Cphn|CyP-18|CypA	peptidylprolyl isomerase A	protein-coding	0.0	0.0	1.5	2.5	9.5	3.0
Merged-chr15-73618601-2	chr15	73618101	73619101	+	850.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033219, intron 1 of 7)	intron (NM_001033219, intron 1 of 7)	-1277.0	NM_001357747	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118250778-2	chr11	118250278	118251278	+	850.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-2186.0	NM_011180	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80668512-2	chr12	80668028	80669028	+	850.25	f0_balb.idr|f0_c57.idr	intron (NM_026244, intron 3 of 6)	intron (NM_026244, intron 3 of 6)	23938.0	NR_037995	68354.0	Mm.46194	NR_037995		Plekhd1os	0610009B14Rik	pleckstrin homology domain containing, family D (with coiled-coil domains) member 1, opposite strand	ncRNA	8.0	13.0	0.5	6.5	17.0	3.5
Merged-chr11-115061722-4	chr11	115061239	115062239	+	850.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172050, intron 1 of 3)	intron (NM_172050, intron 1 of 3)	300.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-5053139-2	chr7	5052639	5053639	+	850.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_026900, exon 2 of 2)	exon (NM_026900, exon 2 of 2)	1607.0	NM_026900	68992.0	Mm.41484	NM_026900	ENSMUSG00000055633	Zfp580	1500015O20Rik|AI838225|Znf580	zinc finger protein 580	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96636737-4	chr3	96636237	96637237	+	850.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001162387, exon 2 of 5)	exon (NM_001162387, exon 2 of 5)	890.0	NM_001162388	18632.0	Mm.20901	NM_011069	ENSMUSG00000028102	Pex11b	PEX11beta|Pex11pbeta	peroxisomal biogenesis factor 11 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-67934225-4	chr14	67933726	67934726	+	850.229126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177780)	promoter-TSS (NM_177780)	-654.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24602216-3	chr5	24601739	24602739	+	850.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025891)	promoter-TSS (NM_025891)	-237.0	NM_025891	66993.0	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-149286161-3	chr5	149285648	149286648	+	850.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009663, intron 4 of 4)	intron (NM_009663, intron 4 of 4)	21144.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109126267-3	chr4	109125770	109126770	+	850.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355190, intron 2 of 21)	Charlie29a|DNA|hAT-Charlie	-8234.0	NM_001134791	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0.0	0.0	1.0	0.0	2.0	2.5
Merged-chr3-79228656-6	chr3	79228190	79229190	+	850.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045502, intron 1 of 2)	intron (NR_045502, intron 1 of 2)	15771.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	21.0	14.5	31.0	10.0	7.0	10.5
Merged-chr19-47329311-2	chr19	47328811	47329811	+	850.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 6 of 14)	RMER1C|Other|Other	-55722.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-5181789-3	chr12	5181289	5182289	+	850.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164493, intron 3 of 13)	intron (NM_001164493, intron 3 of 13)	193893.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-36921844-3	chr19	36921345	36922345	+	850.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2246.0	NM_028263	72514.0	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148698841-4	chr2	148698350	148699350	+	850.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019632, intron 9 of 10)	intron (NM_019632, intron 9 of 10)	17730.0	NM_028986	74533.0	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120697341-3	chr8	120696831	120697831	+	850.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29011.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-99298883-4	chr4	99298403	99299403	+	850.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	104756.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	0.0	5.0	6.5	0.0	2.0	3.5
Merged-chr12-84180134-2	chr12	84179634	84180634	+	850.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	13881.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-90242602-3	chr11	90242105	90243105	+	850.166626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-6871.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107769703-4	chr9	107769198	107770198	+	850.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153191, intron 1 of 23)	intron (NR_153191, intron 1 of 23)	1304.0	NM_148930	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	16.0	16.5	27.0	20.5	27.5	10.0
Merged-chr16-36711002-3	chr16	36710502	36711502	+	850.1222529999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 3 of 7)	B3A|SINE|B2	17024.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120648913-5	chr5	120648529	120649529	+	850.1199949999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281999)	promoter-TSS (NM_001281999)	-159.0	NM_001281999	19415.0	Mm.41209	NM_013832	ENSMUSG00000029602	Rasal1	MRASAL	RAS protein activator like 1 (GAP1 like)	protein-coding	0.0	0.0	1.0	2.5	0.0	0.0
Merged-chr12-4840247-4	chr12	4839741	4840741	+	850.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016863, intron 1 of 3)	intron (NM_016863, intron 1 of 3)	1354.0	NM_016863	14226.0	Mm.20453	NM_016863	ENSMUSG00000020635	Fkbp1b	12.6kDa|AW494148|FKBP12.6|calstabin2	FK506 binding protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33467715-4	chr2	33467204	33468204	+	850.1124880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355611, intron 1 of 2)	intron (NM_001355611, intron 1 of 2)	828.0	NM_027947	71834.0	Mm.44186	NM_027947	ENSMUSG00000026788	Zbtb43	1700010E06Rik|Zfp297b|mKIAA0414	zinc finger and BTB domain containing 43	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53090543-3	chr18	53090051	53091051	+	850.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-85741.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	1.0	2.5	2.5	2.0	1.5	4.0
Merged-chr13-56168049-3	chr13	56167545	56168545	+	850.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10840.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	0.0	7.5	9.5	0.0	0.0	0.0
Merged-chr14-47335020-3	chr14	47334537	47335537	+	850.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36763.0	NM_001360542	218975.0	Mm.212297	NM_178684	ENSMUSG00000021840	Mapk1ip1l	9130202B12|C130032J12Rik	mitogen-activated protein kinase 1 interacting protein 1-like	protein-coding	1.0	2.5	2.0	0.0	10.5	2.0
Merged-chr1-177463035-4	chr1	177462520	177463520	+	850.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1O|LTR|ERVL-MaLR	17199.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139722885-2	chr5	139722357	139723357	+	850.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_174850, intron 1 of 16)	intron (NM_174850, intron 1 of 16)	13476.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	0.5	4.0	0.0	1.0	0.0	5.5
Merged-chr2-14187100-4	chr2	14186596	14187596	+	850.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081310, intron 1 of 3)	MLT1C-int|LTR|ERVL-MaLR	12572.0	NM_001081310	625286.0	Mm.158781	NM_001081310	ENSMUSG00000061531	Tmem236	2010003H20Rik|Fam23a|Gm613	transmembrane protein 236	protein-coding	0.0	2.5	0.5	0.0	0.5	0.5
Merged-chr3-90514973-4	chr3	90514545	90515545	+	850.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011309)	promoter-TSS (NM_011309)	610.0	NM_009113	20196.0	Mm.6523	NM_009113	ENSMUSG00000042312	S100a13	-	S100 calcium binding protein A13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80235474-3	chr12	80234978	80235978	+	850.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 1 of 20)	intron (NM_134156, intron 1 of 20)	24893.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-8274587-4	chr6	8274077	8275077	+	850.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302354, intron 2 of 3)	ORR1D2|LTR|ERVL-MaLR	15289.0	NM_001302353	100036521.0	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101368728-7	chr7	101368149	101369149	+	850.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 2 of 33)	L1ME4b|LINE|L1	-9473.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	9.5	46.0	29.5	52.0	64.5	92.0
Merged-chr6-129200178-4	chr6	129199653	129200653	+	850.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	19538.0	NM_053109	93694.0	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136175350-4	chr1	136174829	136175829	+	850.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153829, exon 36 of 36)	non-coding (NR_153829, exon 36 of 36)	37499.0	NM_001329610	76422.0	Mm.159735	NM_001329610		Mroh3	2310006M14Rik	maestro heat-like repeat family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62921407-4	chr11	62921093	62922093	+	850.035706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29600.0	NM_025496	66338.0	Mm.46166	NM_025496	ENSMUSG00000042200	Cdrt4	1700019I23Rik	CMT1A duplicated region transcript 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81177870-3	chr10	81177421	81178421	+	850.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007907, intron 2 of 13)	intron (NM_007907, intron 2 of 13)	-1040.0	NR_028549	100217454.0		NR_028549	ENSMUSG00000064441	Snord37	MBII-376	small nucleolar RNA, C/D box 37	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61068977-2	chr18	61068477	61069477	+	850.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008809, intron 10 of 22)	intron (NM_008809, intron 10 of 22)	23827.0	NM_008809	18596.0	Mm.4146	NM_008809	ENSMUSG00000024620	Pdgfrb	AI528809|CD140b|PDGFR-1|Pdgfr	platelet derived growth factor receptor, beta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167373322-2	chr2	167372822	167373822	+	850.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24144.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-30112683-3	chr17	30112188	30113188	+	850.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356265, intron 2 of 5)	B4|SINE|B4	107649.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87010771-2	chr6	87010271	87011271	+	850.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020045, intron 1 of 7)	intron (NM_020045, intron 1 of 7)	935.0	NM_020045	56748.0	Mm.23809	NM_020045	ENSMUSG00000029993	Nfu1	0610006G17Rik|CGI-33|Hirip5	NFU1 iron-sulfur cluster scaffold	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-12964613-2	chr7	12964113	12965113	+	850.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1225.0	NM_001362140	243834.0	Mm.133086	NM_178732	ENSMUSG00000004500	Zfp324	A930002M05|D430030K24Rik|ZF5128	zinc finger protein 324	protein-coding	0.0	0.5	0.0	0.0	0.0	2.0
Merged-chr13-59704680-3	chr13	59704195	59705195	+	850.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028157, intron 2 of 3)	intron (NM_028157, intron 2 of 3)	1502.0	NM_028157	72219.0	Mm.233883	NM_028157	ENSMUSG00000050876	Spata31d1a	1700013B16Rik|Fam75d1a|Fam75d3	spermatogenesis associated 31 subfamily D, member 1A	protein-coding	0.0	3.0	0.0	0.0	0.0	1.5
Merged-chr2-158170962-2	chr2	158170462	158171462	+	850.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21046.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-53480600-2	chr17	53480100	53481100	+	850.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025887, intron 1 of 5)	intron (NM_025887, intron 1 of 5)	1366.0	NM_025887	271457.0	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	16.5	53.0	59.0	20.0	39.5	38.5
Merged-chr1-171270918-3	chr1	171270436	171271436	+	850.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020579, intron 1 of 7)	intron (NM_020579, intron 1 of 7)	608.0	NM_020579	57370.0	Mm.274011	NM_020579	ENSMUSG00000052423	B4galt3	9530061M23Rik|AA104562|AW125175|ESTM26|ESTM6|R74981	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	protein-coding	10.0	29.0	14.5	12.5	13.0	14.5
Merged-chr4-150238456-1	chr4	150237956	150238956	+	850.0	f1_balb.idr	intron (NM_023119, intron 1 of 11)	intron (NM_023119, intron 1 of 11)	1132.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	88.5	107.5	121.5	82.5	103.5	106.0
Merged-chr11-106793238-2	chr11	106792738	106793738	+	850.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166685, intron 3 of 18)	intron (NM_001166685, intron 3 of 18)	3986.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9648164-2	chr4	9647625	9648625	+	850.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	(TTTA)n|Simple_repeat|Simple_repeat	-4408.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	12.0	24.0	19.5	6.0	7.5	12.0
Merged-chr5-142458923-1	chr5	142458423	142459423	+	850.0	f0_balb.idr	3' UTR (NM_199068, exon 9 of 9)	3' UTR (NM_199068, exon 9 of 9)	-5008.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-125470087-2	chr1	125469587	125470587	+	850.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-34360.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36196696-3	chr18	36196199	36197199	+	850.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001167891, exon 1 of 10)	exon (NM_001167891, exon 1 of 10)	461.0	NM_001167891	100042150.0	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17616383-2	chr6	17615883	17616883	+	850.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20627.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	1.0	1.5	1.0	1.0	1.5	1.0
Merged-chr16-30447866-3	chr16	30447354	30448354	+	850.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59324.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65556605-2	chr9	65556105	65557105	+	850.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153119, exon 6 of 6)	exon (NM_153119, exon 6 of 6)	23482.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59237346-2	chr10	59236846	59237846	+	850.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15424.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-61265084-1	chr19	61264584	61265584	+	850.0	f1_balb.idr	Intergenic	B1_Mur3|SINE|Alu	-36666.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	4.0	4.0	1.5	0.5	5.0	2.0
Merged-chr18-53746408-2	chr18	53745862	53746862	+	850.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1815.0	NM_178686	225523.0	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding	7.0	15.5	8.5	28.5	57.0	36.0
Merged-chr10-7825484-3	chr10	7825004	7826004	+	850.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6966.0	NM_172785	237256.0	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	10.5	24.0	14.0	13.0	16.0	11.5
Merged-chr2-69051823-2	chr2	69051323	69052323	+	850.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 6 of 10)	intron (NM_001347161, intron 6 of 10)	-83977.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135607888-3	chr3	135607398	135608398	+	850.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 13 of 24)	MER44A|DNA|TcMar-Tigger	83649.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	22.5	63.0	28.0	20.0	52.0	29.0
Merged-chr4-63561520-2	chr4	63561020	63562020	+	850.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144905, intron 2 of 9)	B1F|SINE|Alu	1293.0	NM_144905	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105992649-3	chr1	105992150	105993150	+	850.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122675, intron 1 of 12)	intron (NM_001122675, intron 1 of 12)	2244.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102306853-2	chr11	102306353	102307353	+	850.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001044383, intron 19 of 19)	intron (NM_001044383, intron 19 of 19)	-10224.0	NM_001098837	217218.0	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	0.0	3.0	1.5	0.0	0.0	2.0
Merged-chr7-44405066-2	chr7	44404566	44405566	+	850.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	20940.0	NM_016663	20981.0	Mm.4824	NM_016663	ENSMUSG00000030731	Syt3	AI385753|sytIII	synaptotagmin III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-49111577-3	chr9	49111113	49112113	+	850.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359460, intron 7 of 12)	intron (NM_001359460, intron 7 of 12)	8834.0	NM_030709	80893.0	Mm.72799	NM_030709	ENSMUSG00000032268	Tmprss5	spinesin	transmembrane protease, serine 5 (spinesin)	protein-coding	0.0	0.0	2.5	0.0	0.0	0.0
Merged-chr12-3236459-3	chr12	3235952	3236952	+	850.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015551, intron 1 of 6)	intron (NR_015551, intron 1 of 6)	661.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120909863-2	chr14	120909363	120910363	+	850.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-1331.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88893712-2	chr6	88893212	88894212	+	850.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008564, intron 2 of 15)	intron (NM_008564, intron 2 of 15)	5068.0	NM_008564	17216.0	Mm.16711	NM_008564	ENSMUSG00000002870	Mcm2	AA959861|AW476101|BM28|CDCL1|Mcmd2|mKIAA0030	minichromosome maintenance complex component 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-97312575-2	chr10	97312075	97313075	+	850.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110903.0	NR_039547	100628616.0		NR_039547	ENSMUSG00000105557	Mir3966	mmu-mir-3966|mu-mir-3966	microRNA 3966	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79252570-3	chr11	79252079	79253079	+	850.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019653, intron 1 of 8)	intron (NM_019653, intron 1 of 8)	2116.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	4.0	3.0	3.5	5.5	7.0	2.0
Merged-chr11-120461919-2	chr11	120461419	120462419	+	850.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_152807, intron 4 of 5)	intron (NM_152807, intron 4 of 5)	3790.0	NM_152807	67291.0	Mm.103384	NM_152807	ENSMUSG00000049957	Ccdc137	3110023B02Rik	coiled-coil domain containing 137	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99273223-1	chr10	99272723	99273723	+	850.0	f0_balb.idr	Intergenic	MLT1G1|LTR|ERVL-MaLR	9992.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3322745-1	chr19	3322245	3323245	+	850.0	f0_c57.idr	promoter-TSS (NM_013495)	promoter-TSS (NM_013495)	-556.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	36.0	158.5	64.5	34.5	156.5	88.0
Merged-chr11-53786453-3	chr11	53785913	53786913	+	850.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	MTD|LTR|ERVL-MaLR	15940.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-96910941-2	chr5	96910441	96911441	+	850.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10331.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	5.5	34.5	10.5	5.5	38.5	13.0
Merged-chr10-128174284-4	chr10	128173800	128174800	+	850.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039080, intron 2 of 13)	intron (NM_001039080, intron 2 of 13)	2268.0	NM_019711	56516.0	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7808245-2	chr9	7807745	7808745	+	850.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	23855.0	NR_049191	100885830.0		NR_049191	ENSMUSG00000093615	Mir5618	Gm23685|mmu-mir-5618	microRNA 5618	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-39768307-3	chr15	39767756	39768756	+	850.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_022722)	TTS (NM_022722)	22326.0	NM_001289508	75766.0	Mm.159563	NM_029422	ENSMUSG00000022303	Dcstamp	4833414I07Rik|DC-STAMP|FIND|Tm7sf4|mDC-STAMP	dendrocyte expressed seven transmembrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-77089368-2	chr8	77088868	77089868	+	850.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083906, intron 3 of 8)	RLTR20A3_MM|LTR|ERVK	186860.0	NM_001083906	110784.0	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135702136-2	chr5	135701636	135702636	+	850.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 1 of 15)	intron (NM_008898, intron 1 of 15)	12991.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120463635-2	chr11	120463135	120464135	+	850.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_197995)	TTS (NM_197995)	3965.0	NM_197995	70317.0	Mm.485046	NM_197995	ENSMUSG00000057594	Arl16	2600005N12Rik	ADP-ribosylation factor-like 16	protein-coding	2.0	0.0	0.0	1.0	0.0	0.0
Merged-chr16-11012801-3	chr16	11012265	11013265	+	850.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040518, intron 2 of 2)	intron (NR_040518, intron 2 of 2)	3867.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166759377-2	chr2	166758877	166759877	+	850.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34390.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-21681684-2	chr15	21681184	21682184	+	850.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	570232.0	NM_001008420	215654.0	Mm.300909	NM_001008420	ENSMUSG00000040452	Cdh12	Cdhb	cadherin 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82867144-2	chr11	82866644	82867644	+	850.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164569, intron 1 of 7)	intron (NM_001164569, intron 1 of 7)	3600.0	NM_001164570	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31900118-2	chr5	31899618	31900618	+	850.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 6 of 11)	Charlie20a|DNA|hAT-Charlie	202068.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109254743-2	chr3	109254243	109255243	+	850.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85940.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	13.5	9.5	12.5	15.5	11.5	8.5
Merged-chr4-88726804-4	chr4	88726310	88727310	+	849.9916380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-4302.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26119826-4	chr2	26119337	26120337	+	849.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026495, intron 1 of 5)	intron (NM_026495, intron 1 of 5)	2974.0	NM_026495	67991.0	Mm.131074	NM_026495	ENSMUSG00000026932	Nacc2	0610020I02Rik|AI448087|Btbd14a|C030048H19Rik	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4268106-4	chr16	4267592	4268592	+	849.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	38863.0	NR_003628	436332.0	Mm.478141	NM_001013830	ENSMUSG00000089645	Gm5766	EG436332	ribosomal protein L7a pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-13297399-3	chr1	13296906	13297906	+	849.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	RSINE1|SINE|B4	75023.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	16.5	6.0	6.0	3.0	11.0	5.5
Merged-chr7-97075194-4	chr7	97074705	97075705	+	849.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6546.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.0	0.0	1.0	1.5	0.5	2.5
Merged-chr4-3746312-4	chr4	3745802	3746802	+	849.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 6 of 12)	intron (NM_001111096, intron 6 of 12)	31338.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr6-35028483-4	chr6	35027978	35028978	+	849.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164413, intron 10 of 11)	intron (NM_001164413, intron 10 of 11)	-50479.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-35478376-3	chr13	35477883	35478883	+	849.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-181479.0	NM_009881	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	1.5	0.0	2.0	1.5	0.0	3.0
Merged-chr1-88267905-4	chr1	88267397	88268397	+	849.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172505, intron 4 of 4)	intron (NM_172505, intron 4 of 4)	1511.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128535363-4	chr10	128534865	128535865	+	849.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-9506.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116095760-4	chr11	116095241	116096241	+	849.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8746.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	7.0	22.0	11.5	8.0	21.5	10.5
Merged-chr11-54626263-4	chr11	54625667	54626667	+	849.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 10 of 28)	intron (NM_001252494, intron 10 of 28)	30021.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-143219573-4	chr6	143219062	143220062	+	849.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26326.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127598796-3	chr10	127598339	127599339	+	849.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	22309.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	57.5	127.5	80.0	78.5	180.5	93.5
Merged-chr10-67247344-3	chr10	67246859	67247859	+	849.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 22 of 25)	B3|SINE|B2	37922.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107067455-3	chr4	107066890	107067890	+	849.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025500)	promoter-TSS (NM_025500)	402.0	NM_175471	230582.0	Mm.44608	NM_175471	ENSMUSG00000028621	Cyb5rl	2810410C14Rik	cytochrome b5 reductase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124385803-3	chr2	124385319	124386319	+	849.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 3 of 20)	intron (NM_001290997, intron 3 of 20)	-163461.0	NR_040612	75946.0	Mm.415059	NR_040612	ENSMUSG00000086954	4930583P06Rik	-	RIKEN cDNA 4930583P06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127530215-2	chr10	127529715	127530715	+	849.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_183297, intron 1 of 1)	intron (NM_183297, intron 1 of 1)	4344.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-55122606-4	chr3	55122090	55123090	+	849.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001144988, intron 3 of 7)	ORR1F|LTR|ERVL-MaLR	10424.0	NM_001144987	229285.0	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|Spart|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-44456210-4	chr17	44455706	44456706	+	849.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	267634.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44312086-4	chr7	44311575	44312575	+	849.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034115, intron 1 of 24)	intron (NM_001034115, intron 1 of 24)	1811.0	NM_001034115	243961.0	Mm.360368	NM_001034115	ENSMUSG00000038738	Shank1	-	SH3 and multiple ankyrin repeat domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-47054830-4	chr7	47054319	47055319	+	849.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026436)	TTS (NM_026436)	4179.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-65146543-4	chr6	65146036	65147036	+	849.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1806.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-86879379-3	chr10	86878878	86879878	+	849.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 44 of 68)	intron (NM_138673, intron 44 of 68)	100373.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69267636-2	chr11	69267136	69268136	+	849.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30614.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100550479-3	chr5	100549972	100550972	+	849.833374	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21733.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0.0	0.0	0.0	0.0	3.5	0.0
Merged-chr12-79983472-4	chr12	79982986	79983986	+	849.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47222.0	NR_131074	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34865466-3	chr6	34864946	34865946	+	849.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197986, intron 1 of 1)	intron (NM_197986, intron 1 of 1)	2300.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3247523-3	chr11	3247027	3248027	+	849.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037301, intron 1 of 1)	intron (NR_037301, intron 1 of 1)	18936.0	NM_007879	13494.0	Mm.3250	NM_007879	ENSMUSG00000020457	Drg1	AA408859|AI132520|DRG-1|NEDD-3|Nedd3	developmentally regulated GTP binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-110683844-4	chr13	110683358	110684358	+	849.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-219641.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	11.5	0.0	1.0	0.5	2.0	1.0
Merged-chr13-63633778-3	chr13	63633292	63634292	+	849.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-60332.0	NM_001328514	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	2.5	34.5	7.0	0.0	22.0	2.5
Merged-chr2-22775143-3	chr2	22774635	22775635	+	849.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	808.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103488936-3	chr14	103488458	103489458	+	849.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24383.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-33932842-6	chr11	33932288	33933288	+	849.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190886, intron 1 of 7)	Tigger7|DNA|TcMar-Tigger	-30225.0	NM_031169	16533.0	Mm.6206	NM_031169	ENSMUSG00000020155	Kcnmb1	BKbeta1	potassium large conductance calcium-activated channel, subfamily M, beta member 1	protein-coding	0.0	0.5	6.5	0.0	2.0	7.5
Merged-chr11-80154869-5	chr11	80154342	80155342	+	849.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 1 of 10)	intron (NM_172133, intron 1 of 10)	680.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191178924-4	chr1	191178448	191179448	+	849.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007498, intron 1 of 3)	intron (NM_007498, intron 1 of 3)	4385.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70648058-5	chr11	70647522	70648522	+	849.7999880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024211)	promoter-TSS (NM_024211)	735.0	NM_027445	70510.0	Mm.261818	NM_027445	ENSMUSG00000040746	Rnf167	0610010G05Rik|5730408C10Rik|AU019305|AV328608	ring finger protein 167	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-51966737-6	chr12	51966284	51967284	+	849.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177171, intron 1 of 35)	intron (NM_177171, intron 1 of 35)	4537.0	NM_177171	320487.0	Mm.131941	NM_177171	ENSMUSG00000035181	Heatr5a	C230081H03Rik|D930036F22Rik|mKIAA1316	HEAT repeat containing 5A	protein-coding	6.0	25.5	26.5	0.0	4.5	2.5
Merged-chr3-153975886-4	chr3	153975379	153976379	+	849.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081263, intron 1 of 21)	intron (NM_001081263, intron 1 of 21)	2443.0	NM_001081263	242259.0	Mm.239962	NM_001081263	ENSMUSG00000028360	Slc44a5	AA117069|Gm422	solute carrier family 44, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76856752-3	chr11	76856253	76857253	+	849.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9745.0	NM_007754	12874.0	Mm.276736	NM_007754	ENSMUSG00000020841	Cpd	AA960140|AW322530|D830034L15Rik	carboxypeptidase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-128548897-3	chr1	128548363	128549363	+	849.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	43436.0	NM_009911	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	10.5	19.0	9.5	2.5	7.0	6.0
Merged-chr18-62122104-3	chr18	62121598	62122598	+	849.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME3A|LINE|L1	57883.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-103285173-3	chr4	103284662	103285662	+	849.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027612, intron 1 of 8)	intron (NM_027612, intron 1 of 8)	5701.0	NM_027612	70941.0	Mm.158501	NM_027612	ENSMUSG00000028520	4921539E11Rik	-	RIKEN cDNA 4921539E11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49456332-3	chr7	49455830	49456830	+	849.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 7 of 37)	intron (NM_175272, intron 7 of 37)	180505.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84886549-3	chr10	84886055	84887055	+	849.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024918, intron 15 of 17)	intron (NM_001024918, intron 15 of 17)	-31058.0	NM_001013441	237422.0	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	0.0	0.0	1.0	2.5	21.5	5.5
Merged-chr4-141156460-4	chr4	141155951	141156951	+	849.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172518, intron 1 of 9)	RSINE1|SINE|B4	8529.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79910923-4	chr3	79910407	79911407	+	849.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133187, intron 2 of 3)	intron (NM_133187, intron 2 of 3)	24977.0	NM_133187	68659.0	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10451995-2	chr16	10451495	10452495	+	849.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4633.0	NM_001013778	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79669864-4	chr10	79669362	79670362	+	849.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148934, intron 1 of 1)	CpG	452.0	NM_148934	110012.0	Mm.22623	NM_148934	ENSMUSG00000020308	Tpgs1	AV005629|Gm16517|Gtrgeo22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83893914-2	chr8	83893470	83894470	+	849.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6128.0	NM_181039	330814.0	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	8.0	0.0	0.0	0.0	0.0	1.5
Merged-chr9-32725250-4	chr9	32724809	32725809	+	849.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038642, intron 1 of 6)	intron (NM_001038642, intron 1 of 6)	29267.0	NM_001038642	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	1.0	4.0	7.0	0.0	7.5	1.0
Merged-chr2-178413891-2	chr2	178413391	178414391	+	849.68335	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081289)	promoter-TSS (NM_001081289)	572.0	NM_001085501	228966.0	Mm.472736	NM_001085501	ENSMUSG00000049999	Ppp1r3d	2610024M03Rik|Gm359	protein phosphatase 1, regulatory subunit 3D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103346036-3	chr14	103345537	103346537	+	849.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207215, intron 1 of 84)	(CA)n|Simple_repeat|Simple_repeat	763.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32835907-3	chr2	32835406	32836406	+	849.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113569, intron 1 of 19)	intron (NM_001113569, intron 1 of 19)	11326.0	NM_009295	20910.0	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-33982473-3	chr7	33981985	33982985	+	849.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	31457.0	NM_001276475	233099.0	Mm.110829	NM_001100464	ENSMUSG00000066584	Scgb2b27	Abpbg27|Abpbg5|Scgb2b5	secretoglobin, family 2B, member 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30962435-3	chr5	30961949	30962949	+	849.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2122.0	NM_016703	50907.0	Mm.272414	NM_016703	ENSMUSG00000045302	Preb	C85705	prolactin regulatory element binding	protein-coding	4.5	9.5	3.0	24.5	2.0	5.0
Merged-chr2-26747630-3	chr2	26747143	26748143	+	849.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	15923.0	NM_001359164	105244099.0		NM_001359164		Gm39773	LCN16	predicted gene, 39773	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-9660088-4	chr14	9659584	9660584	+	849.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 8 of 9)	L1_Mus3|LINE|L1	-224011.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-82864410-2	chr8	82863908	82864908	+	849.6666869999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_177378, exon 1 of 7)	exon (NM_177378, exon 1 of 7)	1052.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	7.5	35.0	22.0	8.5	12.5	19.0
Merged-chr2-154675492-2	chr2	154674992	154675992	+	849.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	18466.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106093329-3	chr11	106092829	106093829	+	849.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 1 of 15)	MIRc|SINE|MIR	8427.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132736238-3	chr7	132735751	132736751	+	849.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347630, intron 3 of 3)	intron (NM_001347630, intron 3 of 3)	40665.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-7964829-3	chr8	7964329	7965329	+	849.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	695944.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.0	11.0	3.5	2.5	0.0	1.5
Merged-chr12-111587628-3	chr12	111587122	111588122	+	849.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021516, intron 1 of 16)	MER20|DNA|hAT-Charlie	13112.0	NM_022801	17169.0	Mm.260504	NM_021516	ENSMUSG00000007411	Mark3	1600015G02Rik|A430080F22Rik|C-TAK1|ETK-1|ETK1|Emk2|MPK10	MAP/microtubule affinity regulating kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121473021-2	chr10	121472521	121473521	+	849.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	3229.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	3.0	11.5	18.0	17.0	26.0	28.5
Merged-chr2-25579520-2	chr2	25579020	25580020	+	849.642822	f1_balb.idr|f1_c57bl6.idr	exon (NM_001005424, exon 1 of 1)	exon (NM_001005424, exon 1 of 1)	579.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77830897-4	chr15	77830403	77831403	+	849.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	11272.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5250083-4	chr17	5249585	5250585	+	849.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 5 of 19)	intron (NM_001085355, intron 5 of 19)	168682.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37029375-4	chr1	37028917	37029917	+	849.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-89890.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71207414-4	chr17	71206885	71207885	+	849.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164885, intron 1 of 19)	PB1D10|SINE|Alu	2731.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	21.0	49.5	30.0	15.5	34.0	13.0
Merged-chr18-34781305-3	chr18	34780803	34781803	+	849.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081256, intron 1 of 23)	intron (NM_001081256, intron 1 of 23)	4295.0	NM_001081256	277250.0	Mm.277906	NM_029518	ENSMUSG00000038773	Kdm3b	5830462I21Rik|JHDM2B|Jmjd1b|mKIAA1082	KDM3B lysine (K)-specific demethylase 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-95316162-3	chr1	95315677	95316677	+	849.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026321, intron 1 of 2)	intron (NM_026321, intron 1 of 2)	2549.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76440060-3	chr11	76439583	76440583	+	849.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 15 of 21)	intron (NM_001346670, intron 15 of 21)	28382.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-89383131-3	chr13	89382678	89383678	+	849.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-157458.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	12.0	2.0	17.0	2.0	2.0	10.0
Merged-chr6-97463119-2	chr6	97462594	97463594	+	849.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	MER45B|DNA|hAT-Tip100	-3808.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	234.0	619.0	358.5	293.5	527.5	298.5
Merged-chr11-101763855-3	chr11	101763364	101764364	+	849.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144831, intron 19 of 22)	intron (NM_144831, intron 19 of 22)	21446.0	NM_008815	18612.0	Mm.5025	NM_008815	ENSMUSG00000017724	Etv4	AW414408|Pea-3|Pea3	ets variant 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98071778-4	chr7	98071249	98072249	+	849.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008663, intron 30 of 48)	intron (NM_008663, intron 30 of 48)	37499.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	8.0	0.0	8.0	2.0	11.0	6.0
Merged-chr9-10324886-4	chr9	10324382	10325382	+	849.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170787, intron 3 of 24)	intron (NM_001170787, intron 3 of 24)	430451.0	NR_105745	102466147.0		NR_105745	ENSMUSG00000098408	Mir6237	Gm27411|mmu-mir-6237	microRNA 6237	ncRNA	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr14-103795805-3	chr14	103795292	103796292	+	849.577759	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47909.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-124703965-7	chr4	124703542	124704542	+	849.5618900000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010213, intron 1 of 5)	(TG)n|Simple_repeat|Simple_repeat	3343.0	NM_010213	14201.0	Mm.331856	NM_010213	ENSMUSG00000032643	Fhl3	SLIM2	four and a half LIM domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98952061-3	chr11	98951577	98952577	+	849.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009024, intron 2 of 8)	B2_Mm2|SINE|B2	-8394.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32361455-3	chr19	32360960	32361960	+	849.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 1 of 9)	ORR1E-int|LTR|ERVL-MaLR	-12144.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	10.5	23.0	8.0	7.5	8.0	10.5
Merged-chr4-45418394-3	chr4	45417892	45418892	+	849.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9626.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	0.5	1.0	1.0	0.0	0.0	0.0
Merged-chr2-4517789-3	chr2	4517290	4518290	+	849.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 7 of 23)	intron (NM_001177843, intron 7 of 23)	-41964.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65198542-3	chr5	65198040	65199040	+	849.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC|LINE|L1	-1156.0	NM_001359880	213081.0	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding	1.5	2.5	0.0	1.5	0.0	0.0
Merged-chr7-110669604-4	chr7	110669104	110670104	+	849.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41947.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26779479-5	chr17	26778880	26779880	+	849.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1699.0	NM_172149	224630.0	Mm.21795	NM_172149	ENSMUSG00000024191	Bnip1	2010005M06Rik|5930429G21Rik|Sec20	BCL2/adenovirus E1B interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160647767-4	chr2	160647343	160648343	+	849.5089109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009408, intron 2 of 20)	intron (NM_009408, intron 2 of 20)	1946.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19067291-2	chr7	19066791	19067791	+	849.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031255, intron 4 of 5)	intron (NM_031255, intron 4 of 5)	-8909.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69760760-2	chr11	69760260	69761260	+	849.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_019871, exon 2 of 2)	exon (NM_019871, exon 2 of 2)	1084.0	NM_019871	56293.0	Mm.6211	NM_019871	ENSMUSG00000018776	Slc35g3	Amac1	solute carrier family 35, member G3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126850795-2	chr8	126850295	126851295	+	849.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151740, exon 2 of 2)	non-coding (NR_151740, exon 2 of 2)	1775.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33430294-3	chr2	33429784	33430784	+	849.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085507, intron 1 of 2)	L2a|LINE|L2	1040.0	NM_001085507	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33798578-2	chr17	33798084	33799084	+	849.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11939.0	NM_001357162	80880.0	Mm.196330	NM_030697	ENSMUSG00000042099	Kank3	0610013D04Rik|Ankrd47|D17Ertd288e|NG28	KN motif and ankyrin repeat domains 3	protein-coding	8.0	7.5	18.0	1.5	14.0	5.5
Merged-chr8-117321460-2	chr8	117320960	117321960	+	849.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-27710.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167675771-2	chr2	167675271	167676271	+	849.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13144.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-75153632-2	chr5	75153135	75154135	+	849.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001347719, exon 1 of 16)	5' UTR (NM_001347719, exon 1 of 16)	699.0	NM_001347719	18595.0	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	0.0	2.5	1.0	0.5	0.0	0.5
Merged-chr2-166091768-2	chr2	166091268	166092268	+	849.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252579, intron 5 of 20)	intron (NM_001252579, intron 5 of 20)	63517.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.0	0.0	0.5	0.0	0.0	2.0
Merged-chr19-9060280-3	chr19	9059793	9060793	+	849.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286518, intron 6 of 6)	intron (NM_001286518, intron 6 of 6)	27663.0	NM_011681	22287.0	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-48266789-2	chr9	48266289	48267289	+	849.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74109.0	NM_030069	78252.0	Mm.31626	NM_030069	ENSMUSG00000032028	Nxpe2	4432416J03Rik|AI323362|Fam55b	neurexophilin and PC-esterase domain family, member 2	protein-coding	0.0	0.5	2.0	0.5	2.0	0.0
Merged-chr16-25041341-3	chr16	25040796	25041796	+	849.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18343.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.5	0.0	0.0	0.5	0.0	0.0
Merged-chr18-80375089-2	chr18	80374589	80375589	+	849.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10835.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128236033-2	chr7	128235533	128236533	+	849.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177001, exon 1 of 1)	3' UTR (NM_177001, exon 1 of 1)	-1324.0	NM_146205	233912.0	Mm.475117	NM_146205	ENSMUSG00000042178	Armc5	AW049683|BC032200	armadillo repeat containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45452511-2	chr7	45452011	45453011	+	849.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030678, intron 14 of 15)	B3|SINE|B2	7375.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45532142-2	chr7	45531681	45532681	+	849.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_148927, intron 2 of 19)	ID_B1|SINE|B4	5851.0	NM_148927	69217.0	Mm.274158	NM_148927	ENSMUSG00000040428	Plekha4	2410005C22Rik|C88169|Pepp1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding	3.5	0.0	1.0	4.5	0.0	1.0
Merged-chr16-91540656-2	chr16	91540204	91541204	+	849.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6390.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	1.0	1.5	1.5	1.0	1.5	0.5
Merged-chr1-91299189-4	chr1	91298731	91299731	+	849.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016717, intron 1 of 11)	intron (NM_016717, intron 1 of 11)	893.0	NM_016717	50880.0	Mm.25724	NM_016717	ENSMUSG00000026307	Scly	9830169H08|A930015N15Rik|SCL|Scly1|Scly2	selenocysteine lyase	protein-coding	25.5	62.5	40.0	44.5	84.5	36.5
Merged-chr17-29431390-2	chr17	29430893	29431893	+	849.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59652.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	12.0	4.5	19.5	5.5	14.0	6.0
Merged-chr11-70491312-2	chr11	70490812	70491812	+	849.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13962.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	0.5	2.5	1.0	1.0	2.5	1.0
Merged-chr11-102229372-2	chr11	102228872	102229872	+	849.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_106179)	TTS (NR_106179)	778.0	NR_106179	102465892.0		NR_106179	ENSMUSG00000098863	Mir8101	Gm27705|mmu-mir-8101	microRNA 8101	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128627318-2	chr10	128626818	128627818	+	849.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013765)	promoter-TSS (NM_013765)	-812.0	NM_013765	27370.0	Mm.32118	NM_013765	ENSMUSG00000025362	Rps26	-	ribosomal protein S26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4207169-4	chr19	4206683	4207683	+	849.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5580.0	NM_011237	19367.0	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98250282-2	chr12	98249782	98250782	+	849.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008079, intron 5 of 16)	Lx9|LINE|L1	9177.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-15294322-3	chr10	15293792	15294792	+	849.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-497485.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43278096-3	chr7	43277599	43278599	+	849.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35201.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62327184-2	chr10	62326684	62327684	+	849.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010438, intron 4 of 21)	intron (NM_010438, intron 4 of 21)	13237.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132847213-2	chr2	132846713	132847713	+	849.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025646)	promoter-TSS (NM_025646)	-521.0	NM_025646	66586.0	Mm.357342	NM_025646	ENSMUSG00000027357	Crls1	0610009I22Rik|4930557M15Rik|5730490M08Rik	cardiolipin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141382822-2	chr7	141382322	141383322	+	849.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9338.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99003864-2	chr15	99003364	99004364	+	849.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	17899.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-116712448-4	chr13	116711960	116712960	+	849.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125718.0	NR_153406	74680.0	Mm.488118	NR_153406	ENSMUSG00000114290	4930435F18Rik	-	RIKEN cDNA 4930435F18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-34416980-3	chr16	34416471	34417471	+	849.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 1 of 59)	intron (NM_177357, intron 1 of 59)	97056.0	NM_001164268	545156.0	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85510680-3	chr12	85510177	85511177	+	849.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A2|LTR|ERVL	36787.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59282611-3	chr9	59282109	59283109	+	849.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8963.0	NM_001359282	72141.0	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-68735191-3	chr8	68734723	68735723	+	849.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252623)	promoter-TSS (NM_001252623)	-77.0	NM_172753	234356.0	Mm.334569	NM_172753	ENSMUSG00000036356	Csgalnact1	4732435N03Rik|CSGalNAcT-1	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding	0.5	8.5	7.5	0.0	1.0	2.0
Merged-chr2-164517999-3	chr2	164517496	164518496	+	849.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20471.0	NM_133779	78928.0	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding	3.0	0.0	0.0	0.0	2.0	0.0
Merged-chr4-116176581-4	chr4	116176084	116177084	+	849.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3212.0	NM_001099295	67323.0	Mm.45442	NM_001099295	ENSMUSG00000078593	1700042G07Rik	-	RIKEN cDNA 1700042G07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84439004-3	chr18	84438485	84439485	+	849.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 3 of 8)	L1_Mus3|LINE|L1	150519.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43771644-2	chr7	43771144	43772144	+	849.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_027097, intron 3 of 4)	intron (NM_027097, intron 3 of 4)	2544.0	NM_027097	69511.0	Mm.20163	NM_027097	ENSMUSG00000044430	Klk12	2310008B01Rik|AI324852|KLK-L5	kallikrein related-peptidase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94461777-2	chr10	94461277	94462277	+	849.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	B1_Mm|SINE|Alu	-53080.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120872583-3	chr4	120872090	120873090	+	849.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_182929, exon 2 of 8)	5' UTR (NM_182929, exon 2 of 8)	17791.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	12.5	2.5	0.0	1.0	11.5	3.5
Merged-chr1-138152959-2	chr1	138152459	138153459	+	849.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	22167.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45436249-3	chr19	45435757	45436757	+	849.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360127, intron 2 of 13)	intron (NM_001360127, intron 2 of 13)	72523.0	NM_001360126	12234.0	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr10-53448748-4	chr10	53448255	53449255	+	849.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38873.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-60817773-4	chr19	60817275	60818275	+	849.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026437, intron 3 of 8)	intron (NM_026437, intron 3 of 8)	6220.0	NM_001347464	67894.0	Mm.26148	NM_026437	ENSMUSG00000024993	Fam45a	1810055E12Rik	family with sequence similarity 45, member A	protein-coding	109.0	156.0	128.0	70.5	85.0	134.0
Merged-chr5-146786329-2	chr5	146785947	146786947	+	849.369019	f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	ID_B1|SINE|B4	8509.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	7.0	37.0	10.0	5.0	15.5	13.5
Merged-chr11-50355676-4	chr11	50355145	50356145	+	849.354126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	2234.0	NR_030529	100049547.0		NR_030529	ENSMUSG00000076450	Mir804	Mirn804|mmu-mir-804	microRNA 804	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78344674-9	chr11	78344172	78345172	+	849.351868	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313988)	promoter-TSS (NM_001313988)	-912.0	NM_001313988	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-144239328-2	chr1	144238804	144239804	+	849.333374	f0_balb.idr|f0_c57.idr	Intergenic	Lx8b|LINE|L1	9800.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73145120-2	chr14	73144620	73145620	+	849.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_033185, intron 1 of 15)	intron (NR_033185, intron 1 of 15)	2335.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69904768-2	chr8	69904300	69905300	+	849.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2242.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	3.5	7.5	1.0	7.5	5.5	2.0
Merged-chr16-31927718-2	chr16	31927218	31928218	+	849.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6133.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-31971655-2	chr19	31971155	31972155	+	849.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAGAGA)n|Simple_repeat|Simple_repeat	102894.0	NM_001081074	69865.0	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143311967-3	chr5	143311411	143312411	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172726, intron 2 of 5)	intron (NM_172726, intron 2 of 5)	3449.0	NM_172726	231868.0	Mm.440105	NM_172726	ENSMUSG00000039244	E130309D02Rik	A630028N22	RIKEN cDNA E130309D02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152617263-3	chr1	152616744	152617744	+	849.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	7973.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53785658-3	chr11	53785145	53786145	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033332, exon 4 of 4)	non-coding (NR_033332, exon 4 of 4)	15172.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62839521-3	chr9	62839076	62840076	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033175, intron 1 of 6)	PB1D9|SINE|Alu	789.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85186974-3	chr11	85186473	85187473	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	15877.0	NM_028589	73634.0	Mm.48850	NM_028589	ENSMUSG00000018479	1700125H20Rik	-	RIKEN cDNA 1700125H20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23664716-3	chr17	23664234	23665234	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153784, intron 2 of 9)	MIRb|SINE|MIR	4228.0	NM_153784	212733.0	Mm.59997	NM_153784	ENSMUSG00000043782	Bicdl2	BICDR-2|Ccdc64b	BICD family like cargo adaptor 2	protein-coding	2.0	0.5	0.5	0.0	0.0	0.0
Merged-chr12-33301854-3	chr12	33301367	33302367	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033436)	promoter-TSS (NM_001033436)	-648.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	13.0	74.0	65.0	36.5	52.0	51.5
Merged-chr3-137610888-3	chr3	137610408	137611408	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-12764.0	NM_030143	73284.0	Mm.250841	NM_030143	ENSMUSG00000046818	Ddit4l	1700037B15Rik|1700108M02Rik|REDD2|RTP801L|Smhs1	DNA-damage-inducible transcript 4-like	protein-coding	5.5	1.0	4.0	0.0	2.0	0.0
Merged-chr2-94407422-3	chr2	94406930	94407930	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355691)	promoter-TSS (NM_001355691)	723.0	NR_027831	66457.0	Mm.402557	NR_027831		2810002D19Rik	-	RIKEN cDNA 2810002D19 gene	ncRNA	0.0	1.0	7.5	1.0	1.0	8.5
Merged-chr17-45737367-3	chr17	45736878	45737878	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 1 of 4)	intron (NR_152153, intron 1 of 4)	2872.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67549332-3	chr7	67548814	67549814	+	849.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028144, intron 5 of 8)	intron (NR_028144, intron 5 of 8)	95922.0	NM_175124	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	2.5	2.5	3.5	1.5	4.5	4.5
Merged-chr18-4355422-3	chr18	4354906	4355906	+	849.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040328, intron 2 of 3)	B1F2|SINE|Alu	1859.0	NR_040328	73915.0	Mm.482777	NR_040328		4833419F23Rik	-	RIKEN cDNA 4833419F23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-34922306-3	chr4	34921754	34922754	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-10773.0	NR_040652	73696.0	Mm.1361	NR_040652	ENSMUSG00000085824	Platr9	2410114N07Rik	pluripotency associated transcript 9	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32636165-3	chr9	32635656	32636656	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59886.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123580878-3	chr5	123580381	123581381	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019765, intron 22 of 23)	intron (NM_019765, intron 22 of 23)	-7866.0	NM_029929	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	17.5	8.5	1.5	13.5	11.5	11.5
Merged-chr1-171564475-4	chr1	171563988	171564988	+	849.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018729, intron 1 of 8)	MTC-int|LTR|ERVL-MaLR	5295.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	3.0	0.0	0.0	0.0	1.0	0.0
Merged-chr3-94758144-3	chr3	94757638	94758638	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	28377.0	NM_001293727	70737.0	Mm.87634	NM_001037711	ENSMUSG00000068876	Cgn	6330408J11Rik	cingulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137122793-3	chr5	137122287	137123287	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6580.0	NM_201373	384309.0	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	6.5	0.0	1.0	4.0	0.0	1.0
Merged-chr10-41972957-3	chr10	41972467	41973467	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 7 of 17)	intron (NM_001034858, intron 7 of 17)	45415.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82345519-3	chr15	82345003	82346003	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026914)	promoter-TSS (NM_026914)	-543.0	NM_026914	69029.0	Mm.260042	NM_026914	ENSMUSG00000022452	Smdt1	1500032L24Rik|Emre	single-pass membrane protein with aspartate rich tail 1	protein-coding	10.5	37.5	24.5	45.5	67.5	51.5
Merged-chr7-101904962-3	chr7	101904406	101905406	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025605)	promoter-TSS (NM_025605)	-931.0	NM_025605	66508.0	Mm.30003	NM_025605	ENSMUSG00000030842	Lamtor1	2400001E08Rik|Pdro|p18	late endosomal/lysosomal adaptor, MAPK and MTOR activator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37234512-3	chr10	37234049	37235049	+	849.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95623.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37235720-3	chr10	37235216	37236216	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96790.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105803143-3	chr3	105802638	105803638	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1757.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	26.0	37.0	42.5	19.5	14.5	19.5
Merged-chr11-53765177-3	chr11	53764631	53765631	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1477.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-29698217-4	chr12	29697719	29698719	+	849.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361657, intron 3 of 24)	intron (NM_001361657, intron 3 of 24)	-11774.0	NR_046080	328075.0	Mm.447832	NR_046080	ENSMUSG00000112663	C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA	14.5	33.0	18.0	1.0	10.5	4.0
Merged-chr1-38012781-3	chr1	38012296	38013296	+	849.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198303, intron 1 of 23)	L1MD2|LINE|L1	14786.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149702033-3	chr4	149701590	149702590	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029837)	promoter-TSS (NM_001029837)	-461.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	157.0	298.0	237.5	141.0	407.0	235.0
Merged-chr17-35381024-3	chr17	35380524	35381524	+	849.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001143689, intron 3 of 5)	intron (NM_001143689, intron 3 of 5)	1407.0	NM_001143689	15015.0	Mm.464284	NM_001143689	ENSMUSG00000035929	H2-Q4	H-2Q4|H2-Gs10|Qa-4|Qa4|Qat-4|Qb-1|Qb1	histocompatibility 2, Q region locus 4	protein-coding	0.0	1.5	4.0	0.0	0.0	2.0
Merged-chr18-36708412-4	chr18	36707824	36708824	+	849.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12399.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	5.5	19.0	7.5	8.5	9.5	8.0
Merged-chr2-18983559-3	chr2	18983086	18984086	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	MTD|LTR|ERVL-MaLR	14535.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153081347-4	chr2	153080835	153081835	+	849.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145536, exon 9 of 9)	3' UTR (NM_145536, exon 9 of 9)	15380.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	3.0	7.0	4.5	0.0	6.0	5.5
Merged-chr15-84245486-2	chr15	84244986	84245986	+	849.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	intron (NM_133167, intron 1 of 12)	13443.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84129376-4	chr3	84128931	84129931	+	849.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029797, intron 4 of 7)	intron (NM_029797, intron 4 of 7)	26355.0	NM_029797	76915.0	Mm.274829	NM_029797	ENSMUSG00000033752	Mnd1	2610034E18Rik|AI591601|Gaj	meiotic nuclear divisions 1	protein-coding	2.0	16.0	6.0	2.0	11.5	6.0
Merged-chr11-48994204-4	chr11	48993702	48994702	+	849.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1956.0	NM_011579	21822.0	Mm.15793	NM_011579	ENSMUSG00000078922	Tgtp1	Gtp2|Irgb6|Mg21|Tgtp	T cell specific GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180051205-4	chr2	180050708	180051708	+	849.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178750, intron 1 of 10)	intron (NM_178750, intron 1 of 10)	8725.0	NM_178750	269397.0	Mm.63068	NM_178750	ENSMUSG00000039086	Ss18l1	A230053O16Rik|CREST	SS18, nBAF chromatin remodeling complex subunit like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-56506549-4	chr9	56506035	56507035	+	849.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87916.0	NM_025812	66867.0	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102802100-2	chr4	102801600	102802600	+	849.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_144906, intron 1 of 23)	intron (NM_144906, intron 1 of 23)	41965.0	NM_001285859	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	8.0	0.0	1.5	13.5	2.5	0.5
Merged-chr11-115414309-2	chr11	115413795	115414795	+	849.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5624.0	NM_027862	71679.0	Mm.371641	NM_027862	ENSMUSG00000034566	Atp5h	0610009D10Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D	protein-coding	31.5	36.0	18.0	23.5	40.5	33.0
Merged-chr6-108464985-3	chr6	108464484	108465484	+	849.2333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-24759.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86236427-3	chr15	86235928	86236928	+	849.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 3 of 12)	intron (NM_145476, intron 3 of 12)	21969.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65936414-3	chr18	65935919	65936919	+	849.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013833, intron 2 of 2)	intron (NM_013833, intron 2 of 2)	2670.0	NM_013833	19434.0	Mm.431047	NM_013833	ENSMUSG00000024518	Rax	7530406A22Rik|E130303K03Rik|Rx|ey-1|ey1	retina and anterior neural fold homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12433932-3	chr19	12433467	12434467	+	849.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	6062.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	49.5	164.5	108.0	68.0	170.5	129.0
Merged-chr17-12367599-3	chr17	12367094	12368094	+	849.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11015.0	NM_008877	18815.0	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18607285-3	chr2	18606782	18607782	+	849.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65180.0	NM_147778	12238.0	Mm.249586	NM_147778	ENSMUSG00000051154	Commd3	AW550818|Bup|D2Ertd542e	COMM domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155151705-2	chr4	155151207	155152207	+	849.214294	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65103.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	0.0	0.0	1.5	0.0	0.5	0.0
Merged-chr8-47553859-4	chr8	47553366	47554366	+	849.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	20221.0	NM_203507	192174.0	Mm.273081	NM_203507	ENSMUSG00000031568	Rwdd4a	BC016198|Gm1942|Rwdd4	RWD domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-169008878-4	chr2	169008371	169009371	+	849.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30602.0	NR_040326	75508.0	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128804355-3	chr2	128803871	128804871	+	849.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13932.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	12.0	4.5	10.0	2.0	13.0	12.0
Merged-chr12-112543069-4	chr12	112542569	112543569	+	849.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31909.0	NM_178915	104885.0	Mm.37751	NM_178915	ENSMUSG00000054013	Tmem179	AI839735	transmembrane protein 179	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118172316-2	chr11	118171816	118172816	+	849.1999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 10 of 12)	intron (NM_001112700, intron 10 of 12)	40426.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-12418931-4	chr2	12418438	12419438	+	849.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355537, intron 1 of 13)	CpG	522.0	NM_001355537	66960.0	Mm.34059	NM_024185	ENSMUSG00000026767	Mindy3	1810041E18Rik|2310047O13Rik|5830410F13Rik|AI447827|AW111958|Fam188a	MINDY lysine 48 deubiquitinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-169532308-3	chr1	169531812	169532812	+	849.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023284)	promoter-TSS (NM_023284)	-848.0	NM_001355159	66977.0	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170361461-3	chr1	170360957	170361957	+	849.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 4 of 9)	intron (NM_001109985, intron 4 of 9)	52596.0	NM_001039593	76925.0	Mm.33631	NM_001039593	ENSMUSG00000042800	Spata46	1700015E13Rik	spermatogenesis associated 46	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148494359-2	chr5	148493819	148494819	+	849.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57354.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	18.0	19.5	9.0	4.5	38.0	15.0
Merged-chr3-121163594-3	chr3	121163058	121164058	+	849.166626	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028456, intron 1 of 4)	intron (NM_028456, intron 1 of 4)	8137.0	NM_028456	66568.0	Mm.263163	NM_025637	ENSMUSG00000028133	Rwdd3	2510027J23Rik|3110037C01Rik|AI035684|AI662458|Rsume|X2CR1	RWD domain containing 3	protein-coding	10.5	9.0	6.0	0.0	1.0	4.0
Merged-chr2-158653095-2	chr2	158652595	158653595	+	849.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-13638.0	NM_153089	228852.0	Mm.150540	NM_153089	ENSMUSG00000037754	Ppp1r16b	ANKRD4|C130078N17Rik|TIMAP|Wdt4	protein phosphatase 1, regulatory (inhibitor) subunit 16B	protein-coding	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr12-76822467-4	chr12	76822015	76823015	+	849.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134050)	promoter-TSS (NM_134050)	9.0	NM_134050	104886.0	Mm.172847	NM_134050	ENSMUSG00000021062	Rab15	2310012G06Rik|AI840042	RAB15, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75633137-3	chr7	75632641	75633641	+	849.133301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 8 of 36)	Lx9|LINE|L1	177607.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	5.0	1.5	1.0	2.0	20.0	11.5
Merged-chr18-80712545-4	chr18	80712039	80713039	+	849.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 1 of 9)	CpG	532.0	NM_001164109	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-100525398-4	chr9	100524893	100525893	+	849.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010878, intron 1 of 3)	L1M4c|LINE|L1	-18537.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	1.5	2.0	14.5	8.0	9.0	3.0
Merged-chr4-9111156-4	chr4	9110655	9111655	+	849.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-158138.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104285099-4	chr9	104284589	104285589	+	849.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22159.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90247317-3	chr5	90246824	90247824	+	849.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198010, intron 27 of 32)	ORR1A2-int|LTR|ERVL-MaLR	-23328.0	NM_001163456	231430.0	Mm.319697	NM_001033310	ENSMUSG00000035505	Cox18	BC038311	cytochrome c oxidase assembly protein 18	protein-coding	10.0	15.0	18.5	14.5	43.5	46.5
Merged-chr3-22058412-3	chr3	22057911	22058911	+	849.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18241.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47408872-4	chr19	47408327	47409327	+	849.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 2 of 14)	intron (NM_008018, intron 2 of 14)	55584.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0.0	3.5	6.0	1.5	11.0	2.5
Merged-chr19-4216204-4	chr19	4215694	4216694	+	849.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310038, intron 2 of 3)	intron (NM_001310038, intron 2 of 3)	1805.0	NM_001310039	56708.0	Mm.347919	NM_019952	ENSMUSG00000040663	Clcf1	BSF-3|Bsf3|CLC|NNT-1	cardiotrophin-like cytokine factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-51805305-4	chr1	51804814	51805814	+	849.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010863, intron 7 of 29)	intron (NM_010863, intron 7 of 29)	110664.0	NM_001161817	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	4.0	0.0	3.0	0.0	0.5	0.0
Merged-chr18-39612166-4	chr18	39611668	39612668	+	849.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124923.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-86884265-4	chr8	86883755	86884755	+	849.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	1003.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	28.0	70.5	48.5	25.5	67.0	63.5
Merged-chr3-52103859-4	chr3	52103351	52104351	+	849.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001004176, exon 1 of 5)	exon (NM_001004176, exon 1 of 5)	1155.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-69667424-4	chr9	69666931	69667931	+	849.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93509.0	NM_022378	64290.0	Mm.440890	NM_022378	ENSMUSG00000059246	Foxb1	C43|Fkh5|Foxb1a|Foxb1b|Hfh-e5.1|Mf3|Twh	forkhead box B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53788496-3	chr11	53787991	53788991	+	849.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	18018.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114275503-4	chr7	114274968	114275968	+	849.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011965, intron 1 of 9)	intron (NM_011965, intron 1 of 9)	648.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	36.0	96.5	93.5	43.5	49.0	68.0
Merged-chr4-108577997-4	chr4	108577447	108578447	+	849.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172697, intron 1 of 9)	B1_Mur1|SINE|Alu	1389.0	NM_172697	230596.0	Mm.157534	NM_172697	ENSMUSG00000063800	Prpf38a	2410002M20Rik	PRP38 pre-mRNA processing factor 38 (yeast) domain containing A	protein-coding	16.5	59.5	20.5	17.0	56.5	24.5
Merged-chr19-36822663-4	chr19	36822166	36823166	+	849.029175	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-11566.0	NM_001163635	74493.0	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	1.5	4.0	0.0	1.5	1.0	0.0
Merged-chr1-64534108-4	chr1	64533611	64534611	+	849.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037726, intron 1 of 6)	intron (NM_001037726, intron 1 of 6)	1307.0	NM_001037726	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-48434903-1	chr6	48434403	48435403	+	849.0	f1_c57bl6.idr	intron (NM_001085417, intron 4 of 4)	intron (NM_001085417, intron 4 of 4)	10187.0	NM_001085415	68910.0	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	14.5	2.5	9.0	9.0	1.0	6.5
Merged-chr9-22127430-2	chr9	22126930	22127930	+	849.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001102404, intron 4 of 4)	ID2|SINE|ID	3168.0	NM_007388	11433.0	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-57588360-2	chr8	57587860	57588860	+	849.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 1 of 11)	intron (NM_001167981, intron 1 of 11)	-63393.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81178053-1	chr15	81177553	81178553	+	849.0	f0_balb.idr	intron (NM_001082536, intron 1 of 13)	intron (NM_001082536, intron 1 of 13)	12704.0	NM_001082536	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155051778-1	chr2	155051278	155052278	+	849.0	f1_c57bl6.idr	TTS (NM_015770)	TTS (NM_015770)	22719.0	NM_016661	269378.0	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	14.0	15.5	16.0	30.0	34.5	30.0
Merged-chr11-69066418-3	chr11	69065920	69066920	+	849.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-4389.0	NM_025838	66910.0	Mm.33964	NM_025838	ENSMUSG00000020895	Tmem107	1110004B13Rik|2810049P21Rik	transmembrane protein 107	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-43580643-3	chr16	43580168	43581168	+	849.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 5 of 6)	intron (NM_181058, intron 5 of 6)	-59987.0	NR_030576	100124467.0		NR_030576	ENSMUSG00000076372	Mir568	Mirn568|mmu-mir-568	microRNA 568	ncRNA	1.5	0.0	0.0	0.0	3.0	2.5
Merged-chr1-106214309-1	chr1	106213809	106214809	+	849.0	f0_balb.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	42440.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23742638-3	chr17	23742132	23743132	+	849.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028416, exon 7 of 10)	exon (NM_028416, exon 7 of 10)	-2302.0	NM_023824	76498.0	Mm.491253	NM_023824	ENSMUSG00000023909	Paqr4	1500004C10Rik	progestin and adipoQ receptor family member IV	protein-coding	0.0	0.0	0.0	0.0	2.5	0.0
Merged-chr13-45370485-1	chr13	45369985	45370985	+	849.0	f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-19257.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	1.0	6.0	5.5	5.0	4.0	1.5
Merged-chr1-135534209-2	chr1	135533709	135534709	+	849.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173437, intron 2 of 28)	intron (NM_173437, intron 2 of 28)	51146.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134128372-3	chr4	134127871	134128871	+	849.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080559, intron 1 of 2)	intron (NM_080559, intron 1 of 2)	382.0	NM_080559	73723.0	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	14.0	57.5	21.0	15.0	22.0	28.5
Merged-chr16-12041076-2	chr16	12040576	12041576	+	849.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028277, intron 2 of 4)	intron (NM_028277, intron 2 of 4)	56963.0	NM_001174086	72555.0	Mm.310139	NM_028277	ENSMUSG00000022494	Shisa9	2700045P11Rik|Ckamp44	shisa family member 9	protein-coding	0.0	2.5	0.0	0.0	2.5	0.0
Merged-chr17-34280814-1	chr17	34280314	34281314	+	849.0	f0_c57.idr	Intergenic	Intergenic	6957.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	2.0	22.5	7.0	0.5	1.0	3.5
Merged-chr6-32491068-2	chr6	32490568	32491568	+	849.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-20073.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47904708-1	chr17	47904208	47905208	+	849.0	f1_c57bl6.idr	intron (NM_028767, intron 1 of 16)	intron (NM_028767, intron 1 of 16)	19924.0	NM_028767	74123.0	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168250453-3	chr2	168249956	168250956	+	849.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18875.0	NM_001081134	241794.0	Mm.425102	NM_001081134	ENSMUSG00000074575	Kcng1	AW536275	potassium voltage-gated channel, subfamily G, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128369362-2	chr8	128368862	128369862	+	849.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358959, intron 2 of 16)	B4A|SINE|B4	10121.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	0.0	2.0	0.0	1.0	0.0	0.0
Merged-chr7-19176619-2	chr7	19176119	19177119	+	849.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347582, exon 1 of 22)	exon (NM_001347582, exon 1 of 22)	198.0	NM_001347582	72205.0	Mm.154121	NM_028153	ENSMUSG00000040811	Eml2	1600029N02Rik|EMAP-2	echinoderm microtubule associated protein like 2	protein-coding	6.0	0.0	1.5	3.0	3.5	0.0
Merged-chr3-32721825-2	chr3	32721325	32722325	+	849.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019673, intron 11 of 13)	intron (NM_019673, intron 11 of 13)	13279.0	NM_019673	56456.0	Mm.41077	NM_019673	ENSMUSG00000027671	Actl6a	2810432C06Rik|AI851094|ARP4|Actl6|Baf53a|C79802	actin-like 6A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-56977295-4	chr1	56976808	56977808	+	849.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358580, intron 1 of 11)	CpG	1342.0	NM_001358581	212712.0	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding	0.0	4.5	0.0	0.0	3.0	0.0
Merged-chr5-123344411-4	chr5	123343928	123344928	+	849.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029850)	promoter-TSS (NM_029850)	-20.0	NM_029850	77045.0	Mm.151960	NM_029850	ENSMUSG00000029438	Bcl7a	4432415N06Rik|AI448316	B cell CLL/lymphoma 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94967205-1	chr8	94966705	94967705	+	849.0	f1_balb.idr	Intergenic	Intergenic	-9904.0	NM_001198894	14766.0	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0.0	0.0	1.5	1.0	0.0	3.0
Merged-chr14-103101405-2	chr14	103100905	103101905	+	849.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1839.0	NM_001360342	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80718752-2	chr10	80718252	80719252	+	849.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007460, intron 13 of 30)	intron (NM_007460, intron 13 of 30)	16059.0	NM_027829	71564.0	Mm.35802	NM_027829	ENSMUSG00000055862	Izumo4	9030607L17Rik|AI550407	IZUMO family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-157038015-1	chr1	157037515	157038515	+	849.0	f1_balb.idr	Intergenic	Intergenic	70635.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	0.0	1.0	4.5	3.0	3.0	0.0
Merged-chr3-145929169-2	chr3	145928669	145929669	+	849.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009740, intron 1 of 2)	B1_Mus2|SINE|Alu	4907.0	NM_009740	12042.0	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26569322-1	chr17	26568822	26569822	+	849.0	f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	L1MB1|LINE|L1	7810.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	2.5	2.0	6.5	9.5	13.0	1.0
Merged-chr9-12089052-2	chr9	12088552	12089552	+	849.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	1016803.0	NR_040755	78219.0	Mm.414868	NR_040755	ENSMUSG00000111830	4930568E12Rik	-	RIKEN cDNA 4930568E12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65661956-3	chr3	65661457	65662457	+	849.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2669.0	NR_106200	102465905.0		NR_106200	ENSMUSG00000098944	Mir8120	Gm27637|mmu-mir-8120	microRNA 8120	ncRNA	0.0	1.0	2.5	2.0	0.0	0.0
Merged-chr8-120795198-2	chr8	120794698	120795698	+	849.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56559.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81842048-1	chr7	81841548	81842548	+	849.0	f0_balb.idr	Intergenic	Intergenic	-12617.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	2.5	1.5	5.5	7.0	7.0	9.0
Merged-chr7-138924103-2	chr7	138923603	138924603	+	849.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14597.0	NM_009760	12176.0	Mm.378890	NM_009760	ENSMUSG00000078566	Bnip3	Nip3	BCL2/adenovirus E1B interacting protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47440788-1	chr17	47440288	47441288	+	849.0	f1_balb.idr	intron (NM_145489, intron 1 of 4)	intron (NM_145489, intron 1 of 4)	-3413.0	NM_029296	75462.0	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	0.0	3.0	1.5	0.0	0.0	0.0
Merged-chr10-117873441-3	chr10	117872992	117873992	+	849.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27518.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	13.0	40.0	21.5	9.5	23.5	26.0
Merged-chr18-4236433-3	chr18	4235921	4236921	+	849.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70589.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-195176741-2	chr1	195176241	195177241	+	849.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007758)	promoter-TSS (NM_007758)	-26.0	NM_007758	12902.0	Mm.235387	NM_007758	ENSMUSG00000026616	Cr2	C3DR|CD21|CD35|Cr-1|Cr-2|Cr1	complement receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118821424-4	chr7	118820931	118821931	+	849.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027815, intron 26 of 30)	intron (NM_027815, intron 26 of 30)	34182.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	8.5	11.0	2.0	8.0	10.5	2.5
Merged-chr15-78843680-3	chr15	78843189	78844189	+	849.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027219, intron 1 of 2)	intron (NM_027219, intron 1 of 2)	1042.0	NM_027219	104445.0	Mm.307488	NM_027219	ENSMUSG00000049521	Cdc42ep1	1810058K22Rik|AA980734|Borg5|CEP1|MSE55	CDC42 effector protein (Rho GTPase binding) 1	protein-coding	0.0	0.0	1.0	0.0	4.5	1.0
Merged-chr19-27411329-1	chr19	27410829	27411829	+	849.0	f0_c57.idr	intron (NM_177474, intron 13 of 17)	intron (NM_177474, intron 13 of 17)	18579.0	NM_177474	52874.0	Mm.261027	NM_177474	ENSMUSG00000041360	Pum3	1110069H02Rik|AA675048|D19Bwg1357e	pumilio RNA-binding family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-51944990-3	chr1	51944499	51945499	+	849.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29021.0	NM_010863	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	0.0	0.0	0.0	9.5	2.5	2.5
Merged-chr19-58918803-3	chr19	58918298	58919298	+	849.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327998, intron 2 of 12)	intron (NM_001327998, intron 2 of 12)	-7039.0	NR_037247	100526480.0		NR_037247	ENSMUSG00000092813	Mir3086	mir-3086|mmu-mir-3086	microRNA 3086	ncRNA	3.5	4.0	12.5	5.5	2.0	2.5
Merged-chr5-64378401-2	chr5	64377895	64378895	+	849.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	89547.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	105.5	263.5	167.0	126.0	258.0	132.0
Merged-chr3-10400000-2	chr3	10399500	10400500	+	849.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33027.0	NM_025519	66371.0	Mm.366147	NM_025519	ENSMUSG00000027536	Chmp4c	2010012P02Rik|2210015K02Rik|2310010I16Rik|Shax3|Snf7-3	charged multivesicular body protein 4C	protein-coding	0.0	0.0	0.0	0.0	1.5	0.0
Merged-chr18-56606733-2	chr18	56606243	56607243	+	849.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	18395.0	NM_026099	67343.0	Mm.87057	NM_026099	ENSMUSG00000032900	Tex43	1700065I17Rik|Tseg7	testis expressed 43	protein-coding	3.0	2.5	1.0	0.0	0.0	3.0
Merged-chr1-86439974-2	chr1	86439474	86440474	+	849.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13645.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31119549-4	chr17	31119021	31120021	+	849.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10090.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	3.5	10.5	5.5	7.0	6.0	1.5
Merged-chr16-16351528-2	chr16	16351028	16352028	+	849.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025947, intron 1 of 17)	Lx9|LINE|L1	7047.0	NM_001276341	74006.0	Mm.218820	NM_152816	ENSMUSG00000022789	Dnm1l	6330417M19Rik|AI450666|Dlp1|Dnmlp1|Drp1|python	dynamin 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129471002-3	chr6	129470578	129471578	+	849.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020008, intron 1 of 5)	intron (NM_020008, intron 1 of 5)	1701.0	NM_001309637	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	41.0	167.5	93.5	45.5	134.0	112.5
Merged-chr7-25779292-2	chr7	25778792	25779792	+	849.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 4 of 19)	RMER10A|LTR|ERVL	9441.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-9883146-2	chr2	9882646	9883646	+	849.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040511, exon 4 of 4)	non-coding (NR_040511, exon 4 of 4)	1900.0	NR_024257	381347.0	Mm.441450	NR_024257		4930412O13Rik	Gm10853	RIKEN cDNA 4930412O13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6275352-4	chr19	6274869	6275869	+	849.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1527.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165983761-3	chr2	165983205	165984205	+	849.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8932.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119503874-3	chr11	119503363	119504363	+	849.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164636, intron 7 of 8)	intron (NM_001164636, intron 7 of 8)	12243.0	NM_177394	338371.0	Mm.271946	NM_177394	ENSMUSG00000039850	Endov	A730011L01Rik	endonuclease V	protein-coding	1.5	0.0	0.5	0.0	0.0	0.0
Merged-chr2-132844192-2	chr2	132843692	132844692	+	849.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025676)	TTS (NM_025676)	-2474.0	NM_001024385	66586.0	Mm.357342	NM_025646	ENSMUSG00000027357	Crls1	0610009I22Rik|4930557M15Rik|5730490M08Rik	cardiolipin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135487650-2	chr7	135487150	135488150	+	849.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41004.0	NM_178669	212070.0	Mm.39721	NM_178669	ENSMUSG00000050866	Clrn3	AI649392|Tmem12	clarin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122284205-3	chr8	122283702	122284702	+	849.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009569, intron 1 of 9)	intron (NM_009569, intron 1 of 9)	2061.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	0.0	3.0	1.5	0.0	0.0	1.5
Merged-chr2-118900082-3	chr2	118899592	118900592	+	849.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1523.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	1.0	1.5	1.5	8.5	2.0	0.5
Merged-chr10-120151806-4	chr10	120151297	120152297	+	848.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359184, intron 8 of 11)	intron (NM_001359184, intron 8 of 11)	-38832.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171453142-4	chr1	171452674	171453674	+	848.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172647, intron 1 of 9)	intron (NM_172647, intron 1 of 9)	15613.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	29.0	70.0	63.5	11.5	8.5	7.0
Merged-chr4-3760604-4	chr4	3760106	3761106	+	848.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	45642.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	34.0	21.0	7.0	1.0	13.5	4.5
Merged-chr11-118490935-4	chr11	118490406	118491406	+	848.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001285436, exon 14 of 14)	3' UTR (NM_001285436, exon 14 of 14)	14074.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98494522-4	chr10	98494014	98495014	+	848.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-142647.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51681773-4	chr11	51681213	51682213	+	848.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6921.0	NM_025319	66050.0	Mm.35693	NM_025319	ENSMUSG00000007777	0610009B22Rik	-	RIKEN cDNA 0610009B22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-11904789-4	chr13	11904258	11905258	+	848.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023868, intron 3 of 104)	(TG)n|Simple_repeat|Simple_repeat	202187.0	NM_023868	20191.0	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35712044-3	chr7	35711466	35712466	+	848.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178704, exon 12 of 19)	exon (NM_178704, exon 12 of 19)	42488.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-52909884-3	chr1	52909309	52910309	+	848.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146108, intron 11 of 13)	intron (NM_146108, intron 11 of 13)	43031.0	NM_144953	67080.0	Mm.236287	NM_144953	ENSMUSG00000043629	1700019D03Rik	2410136C24Rik|AA410151|smAKAP	RIKEN cDNA 1700019D03 gene	protein-coding	5.0	11.5	3.0	8.5	4.0	1.5
Merged-chr2-167712400-2	chr2	167711900	167712900	+	848.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21223.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9709071-3	chr3	9708564	9709564	+	848.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	-98979.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0.0	5.5	2.0	0.0	5.5	0.0
Merged-chr2-45063740-3	chr2	45063248	45064248	+	848.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-40571.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88721193-4	chr3	88720696	88721696	+	848.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028056, intron 3 of 5)	RSINE1|SINE|B4	4342.0	NR_028056	19769.0	Mm.4009	NM_009069	ENSMUSG00000028057	Rit1	RIBB|ROC1|Rit	Ras-like without CAAX 1	protein-coding	8.5	22.5	18.5	7.5	25.0	19.0
Merged-chr15-58592888-4	chr15	58592401	58593401	+	848.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	177433.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-65671633-3	chr6	65671126	65672126	+	848.8444210000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172399)	promoter-TSS (NM_172399)	15.0	NM_172399	68169.0	Mm.52392	NM_172399	ENSMUSG00000049001	Ndnf	A930038C07Rik|epidermacan	neuron-derived neurotrophic factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-60027965-2	chr9	60027465	60028465	+	848.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172444, intron 2 of 11)	intron (NM_172444, intron 2 of 11)	76671.0	NM_001101600	665389.0	Mm.335214	NM_001101600		Gm7616	EG665389	predicted gene 7616	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51585792-2	chr11	51585292	51586292	+	848.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028398, intron 2 of 12)	intron (NM_028398, intron 2 of 12)	1035.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-17521994-2	chr11	17521494	17522494	+	848.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	264306.0	NM_001330649	57316.0	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-192722381-2	chr1	192721881	192722881	+	848.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 6 of 11)	intron (NM_144881, intron 6 of 11)	48838.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131246053-4	chr1	131245554	131246554	+	848.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313731)	promoter-TSS (NM_001313731)	-876.0	NM_018750	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	9.5	12.0	4.0	0.0	2.5	0.5
Merged-chr1-180971904-3	chr1	180971409	180972409	+	848.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144794, intron 19 of 22)	B2_Mm2|SINE|B2	29391.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9081359-7	chr13	9080655	9081655	+	848.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12726.0	NM_001311117	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65678583-3	chr18	65678105	65679105	+	848.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361052, intron 6 of 8)	intron (NM_001361052, intron 6 of 8)	-19663.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	37.0	65.0	56.0	82.0	187.0	118.5
Merged-chr7-19334255-2	chr7	19333755	19334755	+	848.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-10816.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22143318-4	chr9	22142819	22143819	+	848.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7573.0	NM_001102405	11433.0	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25583402-2	chr2	25582902	25583902	+	848.8333130000001	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001024616, exon 15 of 15)	3' UTR (NM_001024616, exon 15 of 15)	-3303.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80080822-4	chr15	80080363	80081363	+	848.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013762, intron 4 of 9)	intron (NM_013762, intron 4 of 9)	2043.0	NR_028281	100302600.0		NR_028281		Snord43	MBII-47	small nucleolar RNA, C/D box 43	snoRNA	0.0	3.0	0.0	0.0	0.0	0.0
Merged-chr7-140141521-4	chr7	140141031	140142031	+	848.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199301, intron 3 of 10)	intron (NM_199301, intron 3 of 10)	3967.0	NM_199301	212508.0	Mm.296088	NM_199301	ENSMUSG00000039018	Mtg1	Gm169|Gtpbp7	mitochondrial ribosome-associated GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-162646483-3	chr1	162646028	162647028	+	848.805542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177581)	TTS (NM_001177581)	7378.0	NM_010865	17926.0	Mm.10694	NM_010865	ENSMUSG00000026697	Myoc	AI957332|GLC1A|TIGR	myocilin	protein-coding	3.0	7.5	2.5	3.0	0.0	0.0
Merged-chr6-140491111-3	chr6	140490625	140491625	+	848.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144920, intron 3 of 30)	intron (NM_144920, intron 3 of 30)	67026.0	NM_144920	109135.0	Mm.247670	NM_144920	ENSMUSG00000030231	Plekha5	2810431N21Rik|AI428202|AK129423|AMH-Cre|Ayu21-9|Gt(pU21)9Imeg|Pepp2|Tg(AMH-cre)1Flor	pleckstrin homology domain containing, family A member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134540181-4	chr5	134539695	134540695	+	848.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039162, intron 1 of 15)	intron (NM_001039162, intron 1 of 15)	12239.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124311696-3	chr6	124311188	124312188	+	848.788879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_053094, exon 5 of 17)	exon (NM_053094, exon 5 of 17)	7037.0	NM_053094	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	3.0	3.0	9.0	1.5	0.5	1.0
Merged-chr10-8762112-3	chr10	8761605	8762605	+	848.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	123965.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	117.0	275.5	203.5	116.0	245.5	208.0
Merged-chr2-25263221-3	chr2	25262735	25263735	+	848.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175286, exon 1 of 4)	exon (NM_175286, exon 1 of 4)	637.0	NM_175286	97031.0	Mm.308539	NM_175286	ENSMUSG00000048707	Tprn	C430004E15Rik|C87750	taperin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120986605-4	chr4	120986100	120987100	+	848.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	-13278.0	NR_105982	102465614.0		NR_105982	ENSMUSG00000106436	Mir7015	mmu-mir-7015	microRNA 7015	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95673376-4	chr3	95672880	95673880	+	848.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14537.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62360900-4	chr9	62360403	62361403	+	848.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 1 of 6)	CT-rich|Low_complexity|Low_complexity	19560.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-25009433-4	chr16	25008933	25009933	+	848.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-50206.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-59078649-4	chr12	59078152	59079152	+	848.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	11733.0	NM_008891	18949.0	Mm.22347	NM_008891	ENSMUSG00000020994	Pnn	AU045199|D12Ertd512e	pinin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70903274-4	chr8	70902780	70903780	+	848.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2694.0	NM_173013	270058.0	Mm.248559	NM_173013	ENSMUSG00000019261	Map1s	6430517J16Rik|Bpy2ip1|Map8|Mtap1s|VCY2IP1	microtubule-associated protein 1S	protein-coding	3.0	2.0	4.0	0.0	0.0	7.0
Merged-chr11-115047237-3	chr11	115046763	115047763	+	848.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199201, intron 1 of 3).2	B4A|SINE|B4	1032.0	NM_199201	382551.0	Mm.424732	NM_199201	ENSMUSG00000069607	Cd300ld3	AY457049|Cd300lh|Clm3|Lmir7|clm-3	CD300 molecule like family member D3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-102866240-3	chr13	102865741	102866741	+	848.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	105986.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-151536065-4	chr2	151535586	151536586	+	848.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6397.0	NR_126058	14225.0	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84190479-2	chr8	84189956	84190956	+	848.7000119999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-11495.0	NR_029821	723819.0		NR_029821	ENSMUSG00000065483	Mir181c	Mirn181c|mir-181c	microRNA 181c	ncRNA	5.0	14.5	0.0	4.0	17.0	1.5
Merged-chr10-80672452-3	chr10	80671986	80672986	+	848.7000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021462, intron 2 of 13)	intron (NM_021462, intron 2 of 13)	3807.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-40047400-3	chr15	40046896	40047896	+	848.68335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155348, intron 1 of 2)	MLT1A1|LTR|ERVL-MaLR	2208.0	NR_155348	102636079.0	Mm.421381	NR_155348	ENSMUSG00000115142	Gm33251	-	predicted gene, 33251	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128839331-4	chr4	128838838	128839838	+	848.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-33226.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9696765-4	chr3	9696235	9697235	+	848.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 6 of 7)	intron (NM_053182, intron 6 of 7)	-86650.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0.0	0.0	0.0	0.0	5.5	3.5
Merged-chr12-102162996-3	chr12	102162495	102163495	+	848.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172152, intron 2 of 16)	intron (NM_172152, intron 2 of 16)	34268.0	NM_172152	238384.0	Mm.312448	NM_172152	ENSMUSG00000041771	Slc24a4	A930002M03Rik|AW492432|NCKX4	solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-51911932-3	chr15	51911445	51912445	+	848.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34504.0	NM_030132	78581.0	Mm.176347	NM_030132	ENSMUSG00000022313	Utp23	1700010I21Rik|AI662478|BB238373|D530033C11Rik	UTP23 small subunit processome component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-129533000-2	chr3	129532500	129533500	+	848.6666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153368)	promoter-TSS (NR_153368)	-612.0	NR_153368	102639747.0	Mm.393257	NR_153368		Gm35986	-	predicted gene, 35986	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30594279-3	chr7	30593765	30594765	+	848.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153655, intron 1 of 3)	intron (NR_153655, intron 1 of 3)	-1323.0	NM_021397	58206.0	Mm.116789	NM_021397	ENSMUSG00000006310	Zbtb32	4930524C15Rik|FAXF|FAZF|PLZP|Rog|Tzfp	zinc finger and BTB domain containing 32	protein-coding	5.5	13.5	2.5	8.5	14.0	13.0
Merged-chr8-34066112-3	chr8	34065557	34066557	+	848.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41757.0	NM_001293758	22428.0	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	1.0	5.0	4.5	2.0	13.0	1.5
Merged-chr4-140905495-3	chr4	140905005	140906005	+	848.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008812)	promoter-TSS (NM_008812)	-855.0	NM_008812	18600.0	Mm.2296	NM_008812	ENSMUSG00000028927	Padi2	Pdi|Pdi2|mKIAA0994	peptidyl arginine deiminase, type II	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr16-18348801-3	chr16	18348296	18349296	+	848.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359108)	promoter-TSS (NM_001359108)	614.0	NM_001272029	11877.0	Mm.293599	NM_033474	ENSMUSG00000000325	Arvcf	-	armadillo repeat gene deleted in velocardiofacial syndrome	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73044773-3	chr12	73044301	73045301	+	848.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009189, intron 1 of 1)	CpG	1911.0	NM_009189	20471.0	Mm.4645	NM_009189	ENSMUSG00000051367	Six1	BB138287	sine oculis-related homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57926571-3	chr15	57926076	57927076	+	848.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356310, intron 3 of 19)	intron (NM_001356310, intron 3 of 19)	14377.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-25221852-3	chr5	25221354	25222354	+	848.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1018.0	NM_144908	231050.0	Mm.246718	NM_144908	ENSMUSG00000038072	Galnt11	A430075I06Rik|AI648252|E430002F06Rik	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-31151304-3	chr9	31150820	31151820	+	848.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357698, intron 17 of 17)	intron (NM_001357698, intron 17 of 17)	-19521.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49497131-3	chr7	49496615	49497615	+	848.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 11 of 37)	intron (NM_175272, intron 11 of 37)	139720.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-127982222-3	chr1	127981694	127982694	+	848.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 12 of 20)	B4A|SINE|B4	113421.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	4.0	3.0	9.5	0.0	12.0	10.0
Merged-chr3-126611629-3	chr3	126611083	126612083	+	848.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	14632.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	62.0	138.5	102.5	68.0	175.0	129.0
Merged-chr4-141976301-3	chr4	141975806	141976806	+	848.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 5 of 31)	intron (NM_177868, intron 5 of 31)	-6686.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27229587-3	chr14	27229115	27230115	+	848.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 3 of 12)	intron (NM_001289686, intron 3 of 12)	-8395.0	NM_027871	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153263233-4	chr2	153262747	153263747	+	848.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080463, intron 6 of 6)	intron (NM_080463, intron 6 of 6)	21715.0	NM_080463	140484.0	Mm.293761	NM_080463	ENSMUSG00000046020	Pofut1	O-FucT-1|mKIAA0180	protein O-fucosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25366178-3	chr2	25365669	25366669	+	848.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033293)	promoter-TSS (NM_001033293)	-506.0	NM_001033293	227620.0	Mm.33797	NM_001033293	ENSMUSG00000026956	Uap1l1	5730445F03Rik	UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-17183407-3	chr11	17182900	17183900	+	848.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024459, intron 2 of 5)	ORR1C1|LTR|ERVL-MaLR	24102.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	6.5	14.0	18.5	18.0	24.0	12.5
Merged-chr11-69404680-2	chr11	69404180	69405180	+	848.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001017426, exon 11 of 23)	exon (NM_001017426, exon 11 of 23)	-6446.0	NM_025915	67020.0	Mm.390406	NM_025915	ENSMUSG00000045377	Tmem88	2600017H02Rik	transmembrane protein 88	protein-coding	0.0	0.0	0.0	0.0	1.5	1.5
Merged-chr9-61363369-2	chr9	61362869	61363869	+	848.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-8997.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51733207-2	chr13	51732707	51733707	+	848.650024	f1_balb.idr|f1_c57bl6.idr	intron (NM_013660, intron 2 of 15)	B1_Mus1|SINE|Alu	60540.0	NM_001281880	20354.0	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102461277-4	chr15	102460860	102461860	+	848.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025385, intron 4 of 4)	intron (NM_025385, intron 4 of 4)	2190.0	NM_025385	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-44419128-3	chr17	44418625	44419625	+	848.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	230553.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76370822-4	chr16	76370323	76371323	+	848.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	2226.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47386320-4	chr9	47385820	47386820	+	848.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143850.0	NM_001310841	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-43637397-4	chr6	43636885	43637885	+	848.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 2 of 8)	intron (NM_013861, intron 2 of 8)	28893.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-99164648-4	chr11	99164155	99165155	+	848.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9578.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31256788-4	chr2	31256282	31257282	+	848.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019681, intron 1 of 7)	intron (NM_019681, intron 1 of 7)	10859.0	NM_019681	14299.0	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-130716812-7	chr1	130716280	130717280	+	848.619019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027859)	promoter-TSS (NR_027859)	-547.0	NM_178691	226418.0	Mm.106553	NM_178691	ENSMUSG00000046404	Yod1	6330564D18Rik|9930028C20Rik|Hshin7	YOD1 deubiquitinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54407676-3	chr12	54407171	54408171	+	848.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16353.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-126831618-3	chr3	126831114	126832114	+	848.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 14 of 18)	intron (NM_001025438, intron 14 of 18)	111772.0	NM_001034168	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	9.5	1.0	6.5	1.0	3.0	3.0
Merged-chr10-88054761-6	chr10	88054306	88055306	+	848.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36266.0	NM_029971	110312.0	Mm.391436	NM_029971	ENSMUSG00000035383	Pmch	A230109K23Rik	pro-melanin-concentrating hormone	protein-coding	5.0	0.0	0.0	0.0	5.5	2.5
Merged-chr16-45738083-4	chr16	45737557	45738557	+	848.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073572, intron 1 of 4)	intron (NR_073572, intron 1 of 4)	4898.0	NM_001272070	213012.0	Mm.247453	NM_172511	ENSMUSG00000033157	Abhd10	-	abhydrolase domain containing 10	protein-coding	2.0	2.0	7.5	10.0	6.0	7.5
Merged-chr2-142883032-4	chr2	142882530	142883530	+	848.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 1 of 26)	intron (NM_001355123, intron 1 of 26)	18434.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136061774-2	chr5	136061274	136062274	+	848.5833130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359361, intron 5 of 5)	intron (NM_001359361, intron 5 of 5)	4507.0	NM_001359361	69665.0	Mm.75713	NM_027158	ENSMUSG00000006143	Upk3bl	2310043J07Rik|Upk3bl1	uroplakin 3B-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100946656-3	chr7	100946185	100947185	+	848.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	-14524.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	33.0	48.0	33.0	40.0	61.0	27.0
Merged-chr4-135763875-3	chr4	135763395	135764395	+	848.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085509, intron 3 of 36)	intron (NM_001085509, intron 3 of 36)	4180.0	NM_001085509	242702.0	Mm.318639	NM_001085509	ENSMUSG00000037139	Myom3	8430427K15Rik|Gm434	myomesin family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-132084337-3	chr3	132083818	132084818	+	848.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020265)	promoter-TSS (NM_020265)	-974.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0.0	3.0	0.0	0.0	0.0	0.0
Merged-chr9-94672788-4	chr9	94672300	94673300	+	848.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 1 of 15)	intron (NM_177909, intron 1 of 15)	2908.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110890017-5	chr9	110889525	110890525	+	848.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153354, intron 12 of 25)	intron (NR_153354, intron 12 of 25)	9703.0	NM_001146060	235633.0	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90697141-2	chr5	90696641	90697641	+	848.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-56614.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-118622139-2	chr5	118621639	118622639	+	848.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	MTC|LTR|ERVL-MaLR	61420.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr11-117826958-3	chr11	117826436	117827436	+	848.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009387)	promoter-TSS (NM_009387)	-922.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3502330-2	chr8	3501830	3502830	+	848.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053177, intron 1 of 13)	intron (NM_053177, intron 1 of 13)	1811.0	NM_053177	94178.0	Mm.8356	NM_053177	ENSMUSG00000004567	Mcoln1	2210015I05Rik|TRPML1|mucolipidin	mucolipin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-59853359-2	chr17	59852859	59853859	+	848.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-840037.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139326425-2	chr5	139325925	139326925	+	848.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172723)	promoter-TSS (NM_172723)	-961.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-64882809-4	chr14	64882333	64883333	+	848.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 4 of 9)	intron (NM_177338, intron 4 of 9)	67024.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	6.5	8.5	7.5	8.5	9.5	7.5
Merged-chr12-17681984-2	chr12	17681484	17682484	+	848.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-8825.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	21.5	38.0	22.5	6.5	24.5	34.5
Merged-chr12-54459600-2	chr12	54459100	54460100	+	848.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68282.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-114459369-2	chr13	114458869	114459869	+	848.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301373)	promoter-TSS (NM_001301373)	-418.0	NM_008046	14313.0	Mm.4913	NM_008046	ENSMUSG00000021765	Fst	AL033346|FS	follistatin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65959163-2	chr5	65958663	65959663	+	848.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7961.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-46848395-2	chr14	46847889	46848889	+	848.5	f0_balb.idr|f1_balb.idr	intron (NM_026832, intron 4 of 5)	intron (NM_026832, intron 4 of 5)	16255.0	NM_001360455	68755.0	Mm.343809	NM_026832	ENSMUSG00000055128	Cgrrf1	1110038G02Rik|1810009H17Rik|CGR19	cell growth regulator with ring finger domain 1	protein-coding	8.5	14.0	1.5	0.0	8.0	4.0
Merged-chr13-23552146-2	chr13	23551646	23552646	+	848.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175655)	promoter-TSS (NM_175655)	-503.0	NM_175655	319157.0	Mm.442307	NM_175655	ENSMUSG00000069274	Hist1h4f	-	histone cluster 1, H4f	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32215798-2	chr17	32215298	32216298	+	848.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286630, intron 8 of 19)	intron (NM_001286630, intron 8 of 19)	-26122.0	NR_102329	100043434.0		NR_102329		Gm4432	-	predicted gene 4432	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144682506-2	chr3	144682006	144683006	+	848.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37829.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-28518472-2	chr2	28517972	28518972	+	848.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009058, intron 1 of 17)	intron (NM_009058, intron 1 of 17)	5305.0	NM_001145834	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86569893-2	chr11	86569393	86570393	+	848.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	14265.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25247999-2	chr7	25247499	25248499	+	848.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010155, intron 1 of 3)	intron (NM_010155, intron 1 of 3)	2759.0	NM_010155	13875.0	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124010359-2	chr5	124009849	124010849	+	848.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 2 of 3)	intron (NM_177876, intron 2 of 3)	13497.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	3.0	3.5	10.0	3.5	1.5	0.5
Merged-chr8-69866985-2	chr8	69866486	69867486	+	848.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151668, intron 3 of 5)	intron (NR_151668, intron 3 of 5)	20406.0	NM_026818	68709.0	Mm.334584	NM_026818	ENSMUSG00000044006	Cilp2	1110031K21Rik|AA407300|CLIP-2	cartilage intermediate layer protein 2	protein-coding	4.0	12.0	7.0	0.0	22.5	10.0
Merged-chr2-90505970-3	chr2	90505533	90506533	+	848.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-26859.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	2.5	7.0	5.5	0.5	15.5	5.5
Merged-chr1-55874928-2	chr1	55874428	55875428	+	848.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56313.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-129297126-2	chr3	129296626	129297626	+	848.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007934, intron 10 of 19)	intron (NM_007934, intron 10 of 19)	35623.0	NM_007934	13809.0	Mm.1193	NM_007934	ENSMUSG00000028024	Enpep	6030431M22Rik|APA|Bp-1/6C3|Ly-51|Ly51	glutamyl aminopeptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34766696-2	chr2	34766196	34767196	+	848.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5394.0	NM_001163434	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115498995-2	chr5	115498497	115499497	+	848.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-7679.0	NM_011223	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	3.0	12.5	8.5	6.5	10.5	5.5
Merged-chr6-72149195-2	chr6	72148695	72149695	+	848.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 6 of 6)	intron (NM_001035228, intron 6 of 6)	-25998.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34069854-2	chr13	34069354	34070354	+	848.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026512, intron 6 of 6)	RLTR12C|LTR|ERVK	8154.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	0.0	2.0	0.0	0.0	2.5	0.0
Merged-chr4-132779846-2	chr4	132779346	132780346	+	848.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	11486.0	NM_011284	19891.0	Mm.2870	NM_011284	ENSMUSG00000028884	Rpa2	AA409079|AI325195|AU020965|RPA34|Rf-A2	replication protein A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107892814-2	chr4	107892314	107893314	+	848.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028754, intron 4 of 6)	B2_Mm2|SINE|B2	2915.0	NM_028754	74098.0	Mm.274853	NM_028754	ENSMUSG00000028608	0610037L13Rik	1110008H16Rik	RIKEN cDNA 0610037L13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14233596-2	chr2	14233096	14234096	+	848.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 1 of 29)	intron (NM_008625, intron 1 of 29)	4182.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-105764852-3	chr9	105764371	105765371	+	848.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102607, intron 10 of 36)	intron (NM_001102607, intron 10 of 36)	44777.0	NM_172927	245026.0	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding	0.0	1.0	1.0	5.5	6.5	7.0
Merged-chr6-117428018-3	chr6	117427520	117428520	+	848.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67215.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92039123-3	chr16	92038549	92039549	+	848.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-19273.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47445570-3	chr14	47445071	47446071	+	848.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26990.0	NR_027414	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	4.0	2.5	3.5	27.0	19.5	12.5
Merged-chr11-86894402-4	chr11	86893882	86894882	+	848.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86722.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125950451-4	chr8	125949958	125950958	+	848.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40008.0	NM_145608	234878.0	Mm.216458	NM_145608	ENSMUSG00000031853	Map3k21	Mlk4|mKIAA1804	mitogen-activated protein kinase kinase kinase 21	protein-coding	0.0	3.5	3.0	0.0	1.0	0.5
Merged-chr15-86140569-3	chr15	86140033	86141033	+	848.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145475, exon 13 of 13)	3' UTR (NM_145475, exon 13 of 13)	-45195.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	9.0	8.0	4.0	12.5	14.5	3.0
Merged-chr14-122406757-3	chr14	122406261	122407261	+	848.4111330000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033326, intron 1 of 3)	CpG	44354.0	NR_033325	328479.0	Mm.86095	NR_033325	ENSMUSG00000064052	Gm5089	6530402A20|C030005G22Rik|EG328479	predicted gene 5089	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5801954-5	chr19	5801424	5802424	+	848.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_002847, exon 1 of 1)	non-coding (NR_002847, exon 1 of 1)	748.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	27.5	67.0	52.5	8.0	43.0	47.0
Merged-chr1-138328042-3	chr1	138327529	138328529	+	848.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54291.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43360516-3	chr5	43360030	43361030	+	848.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-125176.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38392330-3	chr16	38391823	38392823	+	848.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30133.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91054296-4	chr1	91053804	91054804	+	848.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	860.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11481859-4	chr4	11481333	11482333	+	848.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4125.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20446037-4	chr11	20445536	20446536	+	848.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97217.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr6-134469418-4	chr6	134468913	134469913	+	848.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 13 of 22)	intron (NM_008514, intron 13 of 22)	54985.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	2.0	0.0	2.0	1.5	0.0	4.0
Merged-chr16-77329318-4	chr16	77328813	77329813	+	848.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015543)	promoter-TSS (NR_015543)	-15.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53328666-2	chr19	53328166	53329166	+	848.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360345)	promoter-TSS (NM_001360345)	-747.0	NM_010847	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32280317-4	chr12	32279800	32280800	+	848.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GGA)n|Simple_repeat|Simple_repeat	-71651.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86154115-3	chr1	86153657	86154657	+	848.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310702)	promoter-TSS (NM_001310702)	-623.0	NM_030184	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72135731-3	chr6	72135184	72136184	+	848.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 3 of 6)	intron (NM_001035228, intron 3 of 6)	-12487.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35110089-3	chr9	35109605	35110605	+	848.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-6623.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17565458-4	chr10	17564955	17565955	+	848.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157773.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90744598-3	chr2	90744144	90745144	+	848.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018828)	promoter-TSS (NM_018828)	-726.0	NM_018828	55935.0	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-7204957-3	chr1	7204474	7205474	+	848.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	116054.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90908541-3	chr5	90908112	90909112	+	848.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME3D|LINE|L1	4713.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0.0	5.0	2.0	0.0	5.0	2.0
Merged-chr5-33443235-3	chr5	33442733	33443733	+	848.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9143.0	NM_011320	672284.0		NM_011320	ENSMUSG00000029112	Nkx1-1	Nkx-1.1|Sax2	NK1 homeobox 1	protein-coding	7.5	0.0	0.0	0.0	1.0	0.0
Merged-chr5-142475952-3	chr5	142475449	142476449	+	848.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172725, intron 14 of 16)	CT-rich|Low_complexity|Low_complexity	12018.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-54493769-3	chr3	54493278	54494278	+	848.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	132671.0	NM_015784	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	12.0	18.5	5.5	18.0	15.0	5.5
Merged-chr4-101355574-3	chr4	101355079	101356079	+	848.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040640, intron 1 of 3)	intron (NR_040640, intron 1 of 3)	669.0	NR_040708	77866.0	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103650153-3	chr14	103649665	103650665	+	848.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361639)	promoter-TSS (NM_001361639)	-63.0	NM_198014	105439.0	Mm.27548	NM_198014	ENSMUSG00000055717	Slain1	9630044O09Rik|AA675320|AW742596	SLAIN motif family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-121089890-3	chr7	121089433	121090433	+	848.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139310, intron 1 of 28)	L1MEc|LINE|L1	6495.0	NM_139310	246190.0	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46132459-4	chr19	46132006	46133006	+	848.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007703, intron 1 of 3)	(CA)n|Simple_repeat|Simple_repeat	607.0	NM_007703	12686.0	Mm.21806	NM_007703	ENSMUSG00000038754	Elovl3	CIN-2|Cig30	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-98055017-3	chr5	98054509	98055509	+	848.305542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24047.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	12.0	15.0	4.0	6.5	11.5	9.0
Merged-chr6-116172655-4	chr6	116172138	116173138	+	848.287476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 1 of 5)	L1VL4|LINE|L1	20736.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93456606-4	chr2	93456035	93457035	+	848.2708130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040533, exon 3 of 3)	non-coding (NR_040533, exon 3 of 3)	3716.0	NR_040533	100038525.0	Mm.440596	NR_040532	ENSMUSG00000075025	Gm10804	-	predicted gene 10804	ncRNA	4.5	1.0	4.5	7.0	1.0	5.5
Merged-chr14-120452423-4	chr14	120451927	120452927	+	848.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26034.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-100336058-4	chr6	100335556	100336556	+	848.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR81|LTR|Gypsy	-48698.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64233405-5	chr5	64232904	64233904	+	848.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	3047.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32428693-4	chr2	32428190	32429190	+	848.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146118, intron 1 of 10)	intron (NM_146118, intron 1 of 10)	2461.0	NM_001164358	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58953929-4	chr1	58953429	58954429	+	848.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172406, intron 1 of 15)	intron (NM_172406, intron 1 of 15)	19553.0	NM_172406	70827.0	Mm.222887	NM_172406	ENSMUSG00000026028	Trak2	2900022D04Rik|4733401O11Rik|AI480836|AW046271|Als2cr3|CALS-C|GRIF-1|GRIF1|OIP98|mKIAA0549	trafficking protein, kinesin binding 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-69666395-4	chr18	69665876	69666876	+	848.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 15 of 19)	intron (NM_001361128, intron 15 of 19)	-259183.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-18917327-4	chr10	18916917	18917917	+	848.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72346.0	NM_022032	64058.0	Mm.28209	NM_022032	ENSMUSG00000019851	Perp	1110017A08Rik|KCP1|KRTCAP1|PIGPC1|THW	PERP, TP53 apoptosis effector	protein-coding	1.5	6.0	2.5	1.5	0.0	2.0
Merged-chr2-59425831-4	chr2	59425381	59426381	+	848.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39199.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126976944-2	chr7	126976444	126977444	+	848.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_026638, exon 2 of 6)	exon (NM_026638, exon 2 of 6)	1030.0	NM_001347656	52858.0	Mm.28219	NM_026638	ENSMUSG00000030682	Cdipt	9530042F15Rik|D7Bwg0575e|Pis|Pis1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63595325-2	chr4	63594825	63595825	+	848.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	5439.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153921838-4	chr1	153921342	153922342	+	848.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	21913.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121500224-3	chr10	121499709	121500709	+	848.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23959.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	2.0	0.0	0.5	0.0	3.0	1.5
Merged-chr14-40947853-6	chr14	40947326	40948326	+	848.2222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	383.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-142045429-4	chr4	142044858	142045858	+	848.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	ID_B1|SINE|B4	27460.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148585305-4	chr2	148584808	148585808	+	848.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-87307.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9494508-4	chr18	9494029	9495029	+	848.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44375.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87513600-4	chr6	87513093	87514093	+	848.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	-17266.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.0	11.5	12.5	1.0	7.5	4.0
Merged-chr4-95048855-4	chr4	95048348	95049348	+	848.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010591)	TTS (NM_010591)	3374.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31401542-4	chr14	31401053	31402053	+	848.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	16124.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51789015-4	chr3	51788534	51789534	+	848.1845089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	127855.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-48432659-3	chr9	48432148	48433148	+	848.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21696.0	NR_026561	667933.0	Mm.491076	NR_026561		Gm8884	EG667933	predicted gene 8884	ncRNA	0.0	2.0	4.5	0.0	0.0	3.5
Merged-chr10-86952838-2	chr10	86952338	86953338	+	848.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 15 of 68)	B3|SINE|B2	55104.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36426279-2	chr18	36425779	36426779	+	848.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_026027, intron 3 of 3)	intron (NM_026027, intron 3 of 3)	28216.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55433134-3	chr11	55432622	55433622	+	848.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13042.0	NM_001290817	20692.0	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113874939-3	chr5	113874400	113875400	+	848.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011779, intron 2 of 10)	intron (NM_011779, intron 2 of 10)	33806.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	3.0	1.0	4.0	0.5	3.5	0.0
Merged-chr7-142384063-2	chr7	142383570	142384570	+	848.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_009983, intron 2 of 8)	intron (NM_009983, intron 2 of 8)	3800.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	12.0	44.5	27.0	6.5	13.0	2.0
Merged-chr1-156624410-4	chr1	156623908	156624908	+	848.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 3 of 12)	intron (NM_001136104, intron 3 of 12)	49931.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	53.5	57.0	81.0	41.0	37.0	38.5
Merged-chr1-185187502-2	chr1	185186994	185187994	+	848.166626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-16674.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	4.0	7.0	5.5	1.5	7.5	1.5
Merged-chr9-118614010-2	chr9	118613510	118614510	+	848.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	7301.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5018944-4	chr19	5018436	5019436	+	848.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5070.0	NM_007854	13340.0	Mm.4930	NM_007854	ENSMUSG00000024891	Slc29a2	Der12|Ent2|Hnp36	solute carrier family 29 (nucleoside transporters), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79512103-4	chr2	79511608	79512608	+	848.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55472.0	NM_010894	18012.0	Mm.4636	NM_010894	ENSMUSG00000034701	Neurod1	BETA2|BHF-1|Nd1|Neurod|bHLHa3	neurogenic differentiation 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116531774-4	chr11	116531256	116532256	+	848.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172475)	promoter-TSS (NM_001172475)	-155.0	NM_001172475	20698.0	Mm.20944	NM_011451	ENSMUSG00000061878	Sphk1	1110006G24Rik|Sk1|Spk1	sphingosine kinase 1	protein-coding	2.5	0.0	2.0	2.5	0.0	2.0
Merged-chr8-106198971-3	chr8	106198473	106199473	+	848.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357382)	TTS (NM_001357382)	11960.0	NM_001007567	66432.0	Mm.269029	NM_001007567	ENSMUSG00000033106	Slc7a6os	2010007L18Rik|2400002F02Rik	solute carrier family 7, member 6 opposite strand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168954713-3	chr2	168954210	168955210	+	848.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009564, intron 1 of 5)	intron (NM_009564, intron 1 of 5)	877.0	NM_009564	22722.0	Mm.2095	NM_009564	ENSMUSG00000027551	Zfp64	-	zinc finger protein 64	protein-coding	6.5	7.5	1.5	3.5	3.0	1.5
Merged-chr10-88680355-3	chr10	88679825	88680825	+	848.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011461, intron 2 of 5)	ID_B1|SINE|B4	2698.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	8.0	28.5	30.0	10.5	14.0	19.0
Merged-chr1-84590365-4	chr1	84589861	84590861	+	848.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152915, intron 1 of 12)	intron (NM_152915, intron 1 of 12)	-105478.0	NR_039588	100628595.0		NR_039588	ENSMUSG00000093254	Mir5126	mir-5126|mmu-mir-5126|mu-mir-5126	microRNA 5126	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88119132-4	chr4	88118590	88119590	+	848.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081184, intron 1 of 43)	intron (NM_001081184, intron 1 of 43)	-2950.0	NR_030478	735282.0		NR_030478	ENSMUSG00000070077	Mir491	Mirn491|mir-491|mmu-mir-491	microRNA 491	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93444576-4	chr10	93444070	93445070	+	848.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8826.0	NM_001313897	16993.0	Mm.271071	NM_008517	ENSMUSG00000015889	Lta4h	-	leukotriene A4 hydrolase	protein-coding	3.5	12.5	7.5	3.0	4.0	2.5
Merged-chr18-24602482-2	chr18	24601982	24602982	+	848.0714109999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_139143, intron 1 of 9)	intron (NM_139143, intron 1 of 9)	1335.0	NM_139143	106957.0	Mm.21688	NM_139143	ENSMUSG00000024270	Slc39a6	Ermelin|Zip6	solute carrier family 39 (metal ion transporter), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99560817-4	chr12	99560323	99561323	+	848.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3018.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20143907-4	chr11	20143401	20144401	+	848.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-30950.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	1.0	0.0	3.0	11.5	7.5	6.5
Merged-chr12-100079921-3	chr12	100079413	100080413	+	848.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32418.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-117602404-4	chr13	117601918	117602918	+	848.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010408)	promoter-TSS (NM_010408)	98.0	NM_010408	15165.0	Mm.343429	NM_010408	ENSMUSG00000021730	Hcn1	Bcng1|C630013B14Rik|HAC2	hyperpolarization-activated, cyclic nucleotide-gated K+ 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111038460-4	chr12	111037995	111038995	+	848.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1303.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119948992-4	chr9	119948505	119949505	+	848.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028735, intron 9 of 28)	intron (NM_028735, intron 9 of 28)	11399.0	NM_028735	74052.0	Mm.189573	NM_028735	ENSMUSG00000032514	Ttc21a	4921538N17Rik|AA387572|Thm2	tetratricopeptide repeat domain 21A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137072331-4	chr5	137071824	137072824	+	848.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008871)	promoter-TSS (NM_008871)	-52.0	NM_008871	18787.0	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	0.5	0.0	6.0	3.5	0.0	5.0
Merged-chr3-79114415-4	chr3	79113920	79114920	+	848.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099624, intron 1 of 23)	L2c|LINE|L2	30467.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	37.5	47.5	13.0	26.5	26.5	8.0
Merged-chr5-29388469-4	chr5	29388077	29389077	+	848.00415	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10187.0	NM_020295	56873.0	Mm.41572	NM_020295	ENSMUSG00000010721	Lmbr1	1110048D14Rik|AU017641	limb region 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107686050-1	chr9	107685550	107686550	+	848.0	f1_balb.idr	intron (NM_011349, intron 11 of 17)	intron (NM_011349, intron 11 of 17)	-6458.0	NM_008140	14685.0	Mm.284853	NM_008140	ENSMUSG00000034837	Gnat1	Gnat-1|Ird1|Ird2|Tralpha|irdc|irdr|transducin	guanine nucleotide binding protein, alpha transducing 1	protein-coding	0.0	8.0	1.5	0.0	3.0	1.5
Merged-chr4-88757291-2	chr4	88756791	88757791	+	848.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243150)	promoter-TSS (NM_001243150)	-553.0	NM_001243150	100041062.0	Mm.489587	NM_001243150		Gm13286	-	predicted gene 13286	protein-coding	0.0	1.0	2.0	0.0	0.0	0.0
Merged-chr15-78173380-1	chr15	78172880	78173880	+	848.0	f1_c57bl6.idr	intron (NM_025931, intron 1 of 6)	intron (NM_025931, intron 1 of 6)	728.0	NM_025931	67042.0	Mm.30191	NM_025931	ENSMUSG00000016637	Ift27	2600013G09Rik|Rabl4	intraflagellar transport 27	protein-coding	10.0	8.0	4.0	4.0	10.0	4.5
Merged-chr7-25305898-2	chr7	25305398	25306398	+	848.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183311)	promoter-TSS (NM_183311)	-210.0	NM_183311	330485.0	Mm.260740	NM_183311	ENSMUSG00000043843	Tmem145	B930076A02Rik	transmembrane protein 145	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-133177592-3	chr1	133177101	133178101	+	848.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46435.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70176392-2	chr14	70175892	70176892	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145978, intron 1 of 9)	intron (NM_145978, intron 1 of 9)	423.0	NM_001253736	213019.0	Mm.283968	NM_145978	ENSMUSG00000022090	Pdlim2	4732462F18Rik|Slim	PDZ and LIM domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84860878-2	chr18	84860378	84861378	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348159, intron 1 of 5)	intron (NM_001348159, intron 1 of 5)	9540.0	NM_001348159	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34483949-2	chr1	34483449	34484449	+	848.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-14463.0	NM_009355	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95216614-2	chr3	95216114	95217114	+	848.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_108026)	promoter-TSS (NR_108026)	-843.0	NR_108026	100504029.0	Mm.478537	NR_108026	ENSMUSG00000097167	Gm16740	-	predicted gene, 16740	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26883467-2	chr8	26882967	26883967	+	848.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59044.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46850338-3	chr8	46849838	46850838	+	848.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110593.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-80772696-3	chr1	80772198	80773198	+	848.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-14145.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-71101712-2	chr1	71101212	71102212	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007525, intron 1 of 10)	URR1B|DNA|hAT-Charlie	1260.0	NM_007525	12021.0	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	-	BRCA1 associated RING domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-24247549-2	chr18	24247049	24248049	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361200, intron 4 of 12)	RMER4B|LTR|ERVK	41555.0	NM_001160404	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142768893-1	chr3	142768393	142769393	+	848.0	f1_balb.idr	intron (NM_145546, intron 1 of 6)	intron (NM_145546, intron 1 of 6)	3646.0	NM_145546	229906.0	Mm.271756	NM_145546	ENSMUSG00000028271	Gtf2b	-	general transcription factor IIB	protein-coding	7.0	1.0	2.5	6.5	8.5	6.5
Merged-chr6-29244177-3	chr6	29243697	29244697	+	848.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-27833.0	NM_001302934	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80781216-1	chr7	80780716	80781716	+	848.0	f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	B2_Mm2|SINE|B2	22115.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	39.5	139.5	61.5	39.0	77.5	62.0
Merged-chr4-19574099-2	chr4	19573599	19574599	+	848.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025476)	promoter-TSS (NM_025476)	-967.0	NM_025476	66302.0	Mm.440686	NM_025476	ENSMUSG00000028229	Rmdn1	Fam82b|RMD-1	regulator of microtubule dynamics 1	protein-coding	21.5	31.5	11.5	9.5	12.0	19.5
Merged-chr5-63971264-3	chr5	63970769	63971769	+	848.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2372.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155071778-2	chr1	155071278	155072278	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151545, intron 3 of 6)	intron (NR_151545, intron 3 of 6)	11486.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64179165-1	chr15	64178665	64179665	+	848.0	f0_balb.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	-118717.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	8.0	1.5	0.0	4.0	7.0	5.0
Merged-chr3-30718775-2	chr3	30718275	30719275	+	848.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18932.0	NM_001309233	320352.0	Mm.229153	NM_001309233	ENSMUSG00000074653	Lrrc31	E230002P03Rik	leucine rich repeat containing 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23830387-2	chr17	23829875	23830875	+	848.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-1266.0	NM_026305	67673.0	Mm.153758	NM_026305	ENSMUSG00000055839	Elob	0610040H15Rik|Tceb2	elongin B	protein-coding	1.0	0.0	1.5	1.0	0.0	4.5
Merged-chr8-120700116-3	chr8	120699603	120700603	+	848.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31783.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-34997939-1	chr12	34997439	34998439	+	848.0	f0_balb.idr	Intergenic	Intergenic	13178.0	NM_029294	75456.0	Mm.79179	NM_029294	ENSMUSG00000092305	Prps1l1	1700011K15Rik	phosphoribosyl pyrophosphate synthetase 1-like 1	protein-coding	17.0	3.5	10.0	11.0	9.0	4.0
Merged-chr15-99224535-3	chr15	99224002	99225002	+	848.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010601)	promoter-TSS (NM_010601)	-474.0	NM_010601	16512.0	Mm.374793	NM_010601	ENSMUSG00000037579	Kcnh3	AU019351|C030044P22Rik|Elk2|Kv12.2|Melk2	potassium voltage-gated channel, subfamily H (eag-related), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-119720291-1	chr7	119719791	119720791	+	848.0	f0_balb.idr	intron (NM_145585, intron 2 of 4)	CpG	3328.0	NM_145585	233802.0	Mm.26392	NM_145585	ENSMUSG00000030942	Thumpd1	6330575P11Rik	THUMP domain containing 1	protein-coding	2.5	14.5	0.0	0.0	1.0	2.5
Merged-chr1-131360286-2	chr1	131359786	131360786	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 5 of 22)	intron (NM_001081011, intron 5 of 22)	-80723.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	10.0	8.5	7.0	7.5	6.0	3.5
Merged-chr15-88026255-1	chr15	88025755	88026755	+	848.0	f0_balb.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	-230312.0	NR_105817	102465209.0		NR_105817	ENSMUSG00000098938	Mir6393	Gm27424|mmu-mir-6393	microRNA 6393	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-176835831-7	chr1	176835341	176836341	+	848.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037996, exon 1 of 1)	non-coding (NR_037996, exon 1 of 1)	292.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	80.0	190.0	154.5	54.5	180.0	156.5
Merged-chr2-126874985-2	chr2	126874485	126875485	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164325, intron 1 of 38)	B2_Mm1a|SINE|B2	1276.0	NM_001164325	58800.0	Mm.244705	NM_021450	ENSMUSG00000027365	Trpm7	2310022G15Rik|4833414K03Rik|5033407O22Rik|CHAK|CHAK1|LTrpC-7|Ltpr7|Ltrpc7|TRPPLIK	transient receptor potential cation channel, subfamily M, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10953099-2	chr16	10952599	10953599	+	848.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38302.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17760865-3	chr16	17760369	17761369	+	848.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145479, intron 1 of 6)	intron (NM_145479, intron 1 of 6)	1248.0	NM_001359068	224023.0	Mm.282807	NM_145479	ENSMUSG00000022750	Klhl22	2610318I18Rik|Kelchl	kelch-like 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-56691866-1	chr8	56691366	56692366	+	848.0	f0_balb.idr	Intergenic	Intergenic	140732.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	0.0	0.0	0.0	0.0	2.0	2.0
Merged-chr2-102945284-3	chr2	102944786	102945786	+	848.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43621.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58503075-3	chr16	58502576	58503576	+	848.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 2 of 10)	L1ME1|LINE|L1	20350.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43461747-2	chr1	43461247	43462247	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	MTC|LTR|ERVL-MaLR	15996.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-98815836-2	chr14	98815336	98816336	+	848.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	230300.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34714520-2	chr17	34714020	34715020	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031176, intron 19 of 32)	intron (NM_031176, intron 19 of 32)	29377.0	NM_009780	12268.0	Mm.477109	NM_009780	ENSMUSG00000073418	C4b	C4|Ss	complement component 4B (Chido blood group)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134688545-2	chr4	134688045	134689045	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 1 of 11)	RMER4B|LTR|ERVK	15745.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65544419-2	chr9	65543919	65544919	+	848.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	35668.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161507832-2	chr1	161507336	161508336	+	848.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13179.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	4.0	17.0	4.0	5.0	11.0	3.5
Merged-chr6-125008414-2	chr6	125007914	125008914	+	848.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252083)	promoter-TSS (NM_001252083)	-824.0	NM_001252083	269800.0	Mm.108677	NM_175557	ENSMUSG00000038346	Zfp384	BB163993|C130073D16Rik|Ciz|NP|Nmp4	zinc finger protein 384	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59338004-2	chr2	59337504	59338504	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 13 of 20)	intron (NM_175464, intron 13 of 20)	48678.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6872421-2	chr19	6871921	6872921	+	848.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14210.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94349021-2	chr11	94348521	94349521	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 29 of 30)	B3A|SINE|B2	21020.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40144683-3	chr4	40144187	40145187	+	848.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007386, intron 1 of 20)	intron (NM_007386, intron 1 of 20)	1422.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87851026-1	chr17	87850526	87851526	+	848.0	f1_balb.idr	Intergenic	Intergenic	-53032.0	NM_199251	210741.0	Mm.312046	NM_199251	ENSMUSG00000050138	Kcnk12	mntk1	potassium channel, subfamily K, member 12	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr17-6075169-1	chr17	6074669	6075669	+	848.0	f1_c57bl6.idr	intron (NM_001360148, intron 1 of 15)	B4A|SINE|B4	4570.0	NM_001111017	321007.0	Mm.5548	NM_177311	ENSMUSG00000015659	Serac1	4930511N22Rik|D17Ertd141e	serine active site containing 1	protein-coding	2.5	0.0	4.5	0.0	0.0	1.5
Merged-chr4-11405311-2	chr4	11404811	11405811	+	848.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18528.0	NM_194055	207920.0	Mm.387719	NM_194055	ENSMUSG00000040728	Esrp1	2210008M09Rik|A630065D16|BC031468|Rbm35a	epithelial splicing regulatory protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67996420-2	chr10	67995920	67996920	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359318, intron 2 of 11)	intron (NM_001359318, intron 2 of 11)	16850.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	0.0	2.5	3.0	5.5	4.5	4.0
Merged-chr10-80901868-5	chr10	80901412	80902412	+	848.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013895)	promoter-TSS (NM_013895)	-943.0	NM_013895	30055.0	Mm.142132	NM_013895	ENSMUSG00000020219	Timm13	D10Ertd378e|Tim9|Timm9	translocase of inner mitochondrial membrane 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20313560-2	chr10	20313060	20314060	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025392, intron 1 of 12)	intron (NM_001025392, intron 1 of 12)	1091.0	NM_001025393	72567.0	Mm.294783	NM_153787	ENSMUSG00000037608	Bclaf1	2610102K23Rik|2700025J07Rik|2810454G14Rik|5730534O06Rik|AI450190|AW556225|Btf|mKIAA0164	BCL2-associated transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142499243-4	chr3	142498753	142499753	+	848.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153564, intron 1 of 10)	intron (NM_153564, intron 1 of 10)	2319.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70632763-1	chr8	70632263	70633263	+	848.0	f1_c57bl6.idr	promoter-TSS (NM_001330687)	promoter-TSS (NM_001330687)	-307.0	NM_001330687	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	5.5	9.0	16.5	5.0	1.5	5.5
Merged-chr19-58950945-2	chr19	58950445	58951445	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178689, intron 3 of 13)	intron (NM_178689, intron 3 of 13)	-7273.0	NM_001327998	73442.0	Mm.39739	NM_175199	ENSMUSG00000025092	Hspa12a	1700063D12Rik|AI118035|AI840429|AW048913|AW556406|D5Mgi40|Gm19925|mKIAA0417	heat shock protein 12A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119613864-3	chr13	119613384	119614384	+	848.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-9935.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164954974-2	chr2	164954474	164955474	+	848.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013599, exon 13 of 13)	3' UTR (NM_013599, exon 13 of 13)	-5872.0	NM_001355481	57138.0	Mm.252987	NM_020333	ENSMUSG00000017740	Slc12a5	KCC2|mKIAA1176	solute carrier family 12, member 5	protein-coding	1.5	3.5	0.0	0.0	3.0	1.0
Merged-chr6-67036059-3	chr6	67035521	67036521	+	848.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040278)	promoter-TSS (NR_040278)	-578.0	NR_040278	320172.0	Mm.449039	NR_040278	ENSMUSG00000087231	E230016M11Rik	-	RIKEN cDNA E230016M11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101831805-2	chr7	101831305	101832305	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010567, intron 9 of 28)	intron (NM_010567, intron 9 of 28)	6019.0	NM_001122739	16332.0	Mm.476000	NM_010567	ENSMUSG00000032737	Inppl1	51C|SHIP2	inositol polyphosphate phosphatase-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41773274-2	chr19	41772774	41773774	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027667, intron 10 of 11)	intron (NM_027667, intron 10 of 11)	26313.0	NR_040320	100502871.0	Mm.394485	NR_040320		Gm19424	-	predicted gene, 19424	ncRNA	139.5	244.5	175.0	34.5	78.5	48.0
Merged-chr7-28268006-3	chr7	28267555	28268555	+	847.9833369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198425, exon 1 of 1)	exon (NM_198425, exon 1 of 1)	174.0	NM_198425	386655.0	Mm.258201	NM_198425	ENSMUSG00000046058	Eid2	Cri2|EID-2	EP300 interacting inhibitor of differentiation 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30708417-3	chr2	30707933	30708933	+	847.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12777.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-95604037-4	chr1	95603558	95604558	+	847.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009183, intron 4 of 4)	L1_Mus2|LINE|L1	63536.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39444191-4	chr10	39443708	39444708	+	847.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	74409.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78037933-4	chr11	78037418	78038418	+	847.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040403)	promoter-TSS (NM_001040403)	-23.0	NM_001040403	14252.0	Mm.130227	NM_008028	ENSMUSG00000061981	Flot2	AI573412|Esa|reggie-2	flotillin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67715773-3	chr10	67715276	67716276	+	847.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143817.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115311132-4	chr8	115310620	115311620	+	847.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019573, intron 8 of 8)	intron (NM_019573, intron 8 of 8)	395774.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37666526-4	chr13	37666063	37667063	+	847.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-159475.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122465706-3	chr14	122465196	122466196	+	847.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022987)	promoter-TSS (NM_022987)	-38.0	NM_022987	65100.0	Mm.390761	NM_022987	ENSMUSG00000041703	Zic5	1700049L20Rik|Opr	zinc finger protein of the cerebellum 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-145925617-3	chr3	145925086	145926086	+	847.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009740, intron 1 of 2)	intron (NM_009740, intron 1 of 2)	1324.0	NM_009740	12042.0	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113619340-4	chr5	113618836	113619836	+	847.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	24267.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35913168-2	chr17	35912668	35913668	+	847.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347380, intron 1 of 3)	intron (NM_001347380, intron 1 of 3)	-3093.0	NM_001357865	73242.0	Mm.273155	NM_028476	ENSMUSG00000024426	Atat1	0610011P08Rik|2610008K08Rik|2610110G12Rik|3110080J08Rik|Mec17|TAT	alpha tubulin acetyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-38904674-4	chr12	38904168	38905168	+	847.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	120957.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4158360-3	chr12	4157849	4158849	+	847.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 2 of 21)	intron (NM_001159537, intron 2 of 21)	24196.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121721522-3	chr5	121721016	121722016	+	847.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009125, intron 1 of 24)	ID4|SINE|ID	9907.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-31059693-3	chr12	31059197	31060197	+	847.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14271.0	NM_027828	104943.0	Mm.248938	NM_027828	ENSMUSG00000036136	Fam110c	9030611O19Rik|AU019489	family with sequence similarity 110, member C	protein-coding	18.0	38.0	21.5	1.0	9.5	2.5
Merged-chr19-5819538-3	chr19	5818959	5819959	+	847.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16787.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67270164-4	chr18	67269659	67270659	+	847.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19064.0	NM_053261	114663.0	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	2.0	4.0	1.0	2.0	4.0	1.0
Merged-chr10-58378024-4	chr10	58377508	58378508	+	847.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201242, intron 1 of 9)	B2_Mm2|SINE|B2	6554.0	NM_201242	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113624359-3	chr5	113623822	113624822	+	847.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	19281.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66225785-3	chr14	66225325	66226325	+	847.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-12001.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	15.0	5.0	5.0	11.5	7.5	12.5
Merged-chr7-108930192-4	chr7	108929671	108930671	+	847.8583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175532)	promoter-TSS (NM_175532)	-13.0	NM_175532	244202.0	Mm.37991	NM_175532	ENSMUSG00000049709	Nlrp10	6430548I20Rik|Nalp10|Napl10|PAN5|Pynod	NLR family, pyrin domain containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3409206-4	chr12	3408709	3409709	+	847.854126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030694, intron 1 of 2)	intron (NR_030694, intron 1 of 2)	17538.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36197385-4	chr18	36196866	36197866	+	847.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167891)	promoter-TSS (NM_001167891)	-206.0	NM_001167891	100042150.0	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125441952-12	chr5	125441389	125442389	+	847.8472289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029752, exon 1 of 3)	exon (NM_029752, exon 1 of 3)	321.0	NM_029752	76809.0	Mm.290720	NM_029752	ENSMUSG00000037905	Bri3bp	2410150I18Rik|AI841257|AW742481	Bri3 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30590097-2	chr7	30589597	30590597	+	847.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NR_106134)	TTS (NR_106134)	717.0	NR_106134	102465774.0		NR_106134	ENSMUSG00000098553	Mir3569	Gm27279|mmu-mir-3569	microRNA 3569	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112667346-4	chr13	112666852	112667852	+	847.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178746, intron 1 of 14)	intron (NM_178746, intron 1 of 14)	6586.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	71.0	97.5	118.0	54.0	93.0	84.0
Merged-chr7-25685114-2	chr7	25684614	25685614	+	847.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172148, intron 2 of 2)	B1F1|SINE|Alu	-1888.0	NM_011577	21803.0	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70055322-4	chr14	70054836	70055836	+	847.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-22109.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69669953-2	chr11	69669453	69670453	+	847.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159375, intron 4 of 10)	intron (NM_001159375, intron 4 of 10)	2470.0	NM_144958	13681.0	Mm.26680	NM_144958	ENSMUSG00000059796	Eif4a1	BM-010|Ddx2a|Eif4	eukaryotic translation initiation factor 4A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19167885-3	chr10	19167392	19168392	+	847.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038022, intron 1 of 1)	intron (NR_038022, intron 1 of 1)	654.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42148469-3	chr19	42147972	42148972	+	847.822205	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_183195, exon 1 of 2)	3' UTR (NM_183195, exon 1 of 2)	1083.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25992696-6	chr8	25992094	25993094	+	847.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029037, intron 1 of 4)	B2_Mm2|SINE|B2	1527.0	NM_029037	74653.0	Mm.17631	NM_029037	ENSMUSG00000037251	Pomk	4930444A02Rik|Sgk196	protein-O-mannose kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120090663-4	chr6	120090162	120091162	+	847.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2718.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-137114506-4	chr2	137114046	137115046	+	847.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013822, intron 2 of 25)	CpG	1974.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54021462-5	chr6	54021006	54022006	+	847.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18426.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	25.5	19.5	16.0	5.0	8.0	8.0
Merged-chr14-104002712-3	chr14	104002222	104003222	+	847.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045953, intron 1 of 2)	intron (NR_045953, intron 1 of 2)	24420.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23819365-3	chr18	23818866	23819866	+	847.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	15396.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50736330-3	chr16	50735828	50736828	+	847.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3555.0	NR_028300	68190.0	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-71162312-3	chr9	71161807	71162807	+	847.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073483, intron 1 of 6)	RSINE1|SINE|B4	326.0	NM_001271843	64008.0	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-97712843-4	chr10	97712359	97713359	+	847.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033537, intron 4 of 4)	intron (NR_033537, intron 4 of 4)	-1913.0	NR_130993	78127.0	Mm.376175	NR_130992	ENSMUSG00000112497	4930525C09Rik	-	RIKEN cDNA 4930525C09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4989198-4	chr19	4988674	4989674	+	847.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153553, intron 1 of 7)	intron (NM_153553, intron 1 of 7)	797.0	NM_153553	225872.0	Mm.287867	NM_153553	ENSMUSG00000045903	Npas4	LE-PAS|Nxf	neuronal PAS domain protein 4	protein-coding	0.0	0.0	0.5	0.0	0.0	2.0
Merged-chr7-19364053-4	chr7	19363547	19364547	+	847.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001010836, intron 1 of 12)	intron (NM_001010836, intron 1 of 12)	2831.0	NM_001010836	333654.0	Mm.333640	NM_001010836	ENSMUSG00000040734	Ppp1r13l	AV260376|IASPP|Nkip1|wa3	protein phosphatase 1, regulatory (inhibitor) subunit 13 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-181887836-2	chr1	181887336	181888336	+	847.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45435.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109062058-4	chr4	109061559	109062559	+	847.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347169)	TTS (NM_001347169)	44404.0	NR_030432	791075.0		NR_030432	ENSMUSG00000076444	Mir761	Mirn761|mir-761|mmu-mir-761	microRNA 761	ncRNA	1.5	4.5	3.5	5.0	5.0	3.5
Merged-chr5-151734210-2	chr5	151733710	151734710	+	847.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83002.0	NM_027009	69263.0	Mm.12553	NM_027009	ENSMUSG00000033970	Rfc3	2810416I22Rik|38kDa|AU022547|Recc3	replication factor C (activator 1) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42634168-2	chr10	42633668	42634668	+	847.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44748.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27650332-4	chr17	27649845	27650845	+	847.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5246.0	NM_011861	23969.0	Mm.4926	NM_011861	ENSMUSG00000040276	Pacsin1	A830061D09Rik|H74|mKIAA1379|syndapin	protein kinase C and casein kinase substrate in neurons 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64013737-3	chr9	64013216	64014216	+	847.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 1 of 3)	intron (NM_008542, intron 1 of 3)	8343.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102016372-7	chr7	102015916	102016916	+	847.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010531, intron 4 of 6)	intron (NM_010531, intron 4 of 6)	1739.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	5.5	34.0	28.0	20.0	29.0	25.0
Merged-chr16-44780850-3	chr16	44780349	44781349	+	847.711121	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	15113.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61549790-4	chr14	61549367	61550367	+	847.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310603, intron 1 of 3)	intron (NM_001310603, intron 1 of 3)	7019.0	NM_025697	66674.0	Mm.282706	NM_025697	ENSMUSG00000021930	Spryd7	6330409N04Rik|Clld6	SPRY domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-68999506-4	chr8	68999021	69000021	+	847.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-89215.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	69.5	156.5	94.5	49.0	88.5	77.0
Merged-chr9-114648662-4	chr9	114648166	114649166	+	847.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8466.0	NM_153585	78893.0	Mm.283708	NM_153585	ENSMUSG00000056167	Cnot10	2600001P13Rik	CCR4-NOT transcription complex, subunit 10	protein-coding	9.0	20.5	13.0	0.5	8.5	4.0
Merged-chr1-95597019-4	chr1	95596516	95597516	+	847.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009183, intron 4 of 4)	Lx8b|LINE|L1	70578.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-15728466-4	chr6	15727977	15728977	+	847.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 2 of 4)	intron (NM_175088, intron 2 of 4)	7816.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97331254-3	chr7	97330732	97331732	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1091.0	NM_001039039	622320.0	Mm.334029	NM_001039039	ENSMUSG00000044952	Kctd21	EG622320	potassium channel tetramerisation domain containing 21	protein-coding	0.0	3.5	1.5	5.0	1.5	4.0
Merged-chr17-13760684-3	chr17	13760182	13761182	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010806, exon 1 of 33)	exon (NM_010806, exon 1 of 33)	141.0	NM_010806	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-21101382-3	chr1	21100899	21101899	+	847.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-22174.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	0.0	0.0	1.0	6.0	11.5	2.0
Merged-chr11-70130116-3	chr11	70129621	70130621	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145137)	promoter-TSS (NM_145137)	-236.0	NM_145137	216864.0	Mm.222465	NM_145137	ENSMUSG00000040950	Mgl2	CD301b	macrophage galactose N-acetyl-galactosamine specific lectin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7269421-3	chr10	7268926	7269926	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57189.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	0.0	1.5	3.0	0.0	0.0	0.0
Merged-chr18-50025419-2	chr18	50024919	50025919	+	847.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	-5565.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	5.5	2.0	3.5	5.0	2.0	10.0
Merged-chr2-104105436-3	chr2	104104942	104105942	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007652, intron 2 of 3)	intron (NM_007652, intron 2 of 3)	9641.0	NM_001111060	12509.0	Mm.247265	NM_007652	ENSMUSG00000032679	Cd59a	AA987121|Cd59|protectin	CD59a antigen	protein-coding	8.5	2.0	5.0	1.5	22.0	9.0
Merged-chr17-78682428-1	chr17	78681928	78682928	+	847.6666869999999	f0_balb.idr	intron (NM_011500, intron 6 of 17)	intron (NM_011500, intron 6 of 17)	54132.0	NM_011500	268980.0	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	37.0	39.0	59.5	33.5	41.5	49.5
Merged-chr7-75691508-2	chr7	75691008	75692008	+	847.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 14 of 36)	intron (NM_029332, intron 14 of 36)	-156830.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83997932-3	chr17	83997427	83998427	+	847.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_130994)	promoter-TSS (NR_130994)	-625.0	NR_130994	78148.0	Mm.243918	NR_130994		8430430B14Rik	-	RIKEN cDNA 8430430B14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-26668470-1	chr14	26667970	26668970	+	847.6666869999999	f0_balb.idr	exon (NM_178668, exon 1 of 3)	exon (NM_178668, exon 1 of 3)	1138.0	NR_106132	102465773.0		NR_106132	ENSMUSG00000098751	Mir7672	Gm27314|mmu-mir-7672	microRNA 7672	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35022921-3	chr16	35022423	35023423	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023587, intron 1 of 6)	CpG	502.0	NM_023587	70757.0	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122835177-3	chr8	122834665	122835665	+	847.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13209.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97230352-3	chr3	97229874	97230874	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3010.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76345949-3	chr12	76345456	76346456	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21065.0	NM_001101471	238276.0	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-115819602-3	chr3	115819102	115820102	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68457.0	NR_027894	68161.0	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-33235841-3	chr14	33235336	33236336	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	19013.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37998548-3	chr1	37998049	37999049	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198303, intron 1 of 23)	CpG	539.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127492811-3	chr3	127492281	127493281	+	847.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	MLT1G1|LTR|ERVL-MaLR	6334.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	40.0	81.5	34.0	0.5	10.5	0.0
Merged-chr17-15375935-3	chr17	15375395	15376395	+	847.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007865)	promoter-TSS (NM_007865)	-72.0	NM_007865	13388.0	Mm.4875	NM_007865	ENSMUSG00000014773	Dll1	Delta1	delta like canonical Notch ligand 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-75413936-3	chr12	75413443	75414443	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175644, intron 2 of 2)	intron (NM_175644, intron 2 of 2)	2838.0	NM_175644	217674.0	Mm.252250	NM_175644	ENSMUSG00000048982	Gphb5	OGH|Zlut1	glycoprotein hormone beta 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96729245-3	chr15	96728749	96729749	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29521.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101339699-3	chr15	101339199	101340199	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29653.0	NR_035462	100316694.0		NR_035462	ENSMUSG00000088459	Mir1941	mmu-mir-1941	microRNA 1941	ncRNA	0.0	0.0	0.0	0.0	0.0	5.0
Merged-chr5-107978828-3	chr5	107978258	107979258	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	intron (NM_026062, intron 1 of 4)	8319.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35779168-3	chr17	35778677	35779677	+	847.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045459, intron 2 of 2)	intron (NR_045459, intron 2 of 2)	6727.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	2.0	0.0	4.5	2.5	0.5	1.5
Merged-chr14-63085901-3	chr14	63085402	63086402	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30829.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116170539-2	chr11	116169998	116170998	+	847.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-2320.0	NM_172571	217335.0	Mm.35241	NM_172571	ENSMUSG00000020776	Fbf1	1110033G01Rik|5930413D20|mKIAA1863	Fas (TNFRSF6) binding factor 1	protein-coding	2.5	13.0	12.5	2.5	16.5	13.5
Merged-chr11-61613806-2	chr11	61613306	61614306	+	847.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-34119.0	NM_001252189	13855.0	Mm.139695	NM_010148	ENSMUSG00000001036	Epn2	9530051D10Rik|AA536924|Ibp2	epsin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9393644-3	chr13	9393144	9394144	+	847.666626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	117119.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126704274-4	chr7	126703777	126704777	+	847.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301374)	promoter-TSS (NM_001301374)	-57.0	NM_001301374	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100349279-2	chr11	100348779	100349779	+	847.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_177981, exon 11 of 13)	exon (NM_177981, exon 11 of 13)	6849.0	NM_001359052	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70654316-4	chr8	70653863	70654863	+	847.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023217, intron 2 of 4)	intron (NM_023217, intron 2 of 4)	5375.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	2.5	13.5	11.0	0.0	17.5	5.5
Merged-chr5-41740023-4	chr5	41739598	41740598	+	847.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24122.0	NM_007524	12020.0	Mm.2530	NM_007524	ENSMUSG00000049691	Nkx3-2	Bapx1|NKX3.2|Nkx-3.2	NK3 homeobox 2	protein-coding	12.0	37.5	12.5	0.0	29.5	8.5
Merged-chr2-84714295-3	chr2	84713802	84714802	+	847.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144887, intron 1 of 11)	intron (NM_144887, intron 1 of 11)	862.0	NM_144887	228136.0	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	25.5	75.5	52.0	29.0	72.5	52.0
Merged-chr4-141762814-3	chr4	141762359	141763359	+	847.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172338, exon 15 of 15)	3' UTR (NM_172338, exon 15 of 15)	16184.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	0.0	4.0	2.5	4.0	27.5	11.5
Merged-chr2-13396252-3	chr2	13395769	13396769	+	847.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081084, intron 28 of 66)	intron (NM_001081084, intron 28 of 66)	95607.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102665692-2	chr15	102665192	102666192	+	847.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_026468, intron 3 of 4)	intron (NM_026468, intron 3 of 4)	5355.0	NM_026468	67942.0	Mm.10314	NM_026468	ENSMUSG00000062683	Atp5g2	1810041M08Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43042491-2	chr4	43042001	43043001	+	847.583374	f1_balb.idr|f1_c57bl6.idr	intron (NR_045567, intron 1 of 7)	B1_Mus1|SINE|Alu	-2200.0	NM_001253354	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	11.0	47.5	32.0	27.0	73.0	37.0
Merged-chr14-63105248-2	chr14	63104709	63105709	+	847.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17253.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	11.0	19.0	16.5
Merged-chr12-103493030-4	chr12	103492526	103493526	+	847.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35803.0	NM_145449	217845.0	Mm.298416	NM_145449	ENSMUSG00000021208	Ifi27l2b	1810023F06Rik|ISG12(b2)	interferon, alpha-inducible protein 27 like 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-156228887-4	chr4	156228378	156229378	+	847.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008233)	promoter-TSS (NM_001008233)	-336.0	NM_001008233	231002.0	Mm.423124	NM_001008233	ENSMUSG00000078485	Plekhn1	BC025458	pleckstrin homology domain containing, family N member 1	protein-coding	8.0	3.0	7.5	1.5	0.0	4.0
Merged-chr7-80177636-3	chr7	80177144	80178144	+	847.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9197.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	2.5	20.5	4.5	2.0	10.5	0.5
Merged-chr2-133407980-3	chr2	133407505	133408505	+	847.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-144154.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35576343-4	chr12	35575848	35576848	+	847.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41359.0	NM_001314027	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3461020-4	chr5	3460547	3461547	+	847.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 4 of 7)	intron (NM_009873, intron 4 of 7)	-82786.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143039011-4	chr5	143038503	143039503	+	847.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	74017.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113657881-2	chr13	113657381	113658381	+	847.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	5795.0	NM_019960	56534.0	Mm.41410	NM_019960	ENSMUSG00000051456	Hspb3	2310035K17Rik|AI844863|Hsbp3|spb3	heat shock protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-39713307-2	chr3	39712807	39713807	+	847.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	809605.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3797901-2	chr4	3797401	3798401	+	847.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37754.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153166254-2	chr2	153165754	153166754	+	847.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	intron (NM_133847, intron 1 of 17)	4953.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111597496-2	chr8	111596996	111597996	+	847.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168623, intron 1 of 4)	intron (NM_001168623, intron 1 of 4)	32826.0	NM_027570	52815.0	Mm.27589	NM_027570	ENSMUSG00000031958	Ldhd	4733401P21Rik|D8Bwg1320e	lactate dehydrogenase D	protein-coding	0.0	0.0	1.0	0.0	0.5	0.0
Merged-chr12-108643681-2	chr12	108643181	108644181	+	847.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	7928.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19749007-2	chr7	19748507	19749507	+	847.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008990, intron 1 of 8)	intron (NM_008990, intron 1 of 8)	566.0	NM_008990	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28080671-4	chr17	28080178	28081178	+	847.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013687)	promoter-TSS (NM_013687)	-39.0	NM_001085555	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr10-7850201-2	chr10	7849727	7850727	+	847.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_172785, intron 2 of 5)	intron (NM_172785, intron 2 of 5)	13846.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	36.5	41.5	44.5	33.0	47.0	61.0
Merged-chr11-117842585-2	chr11	117842085	117843085	+	847.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-6652.0	NM_001012273	11799.0	Mm.8552	NM_009689	ENSMUSG00000017716	Birc5	AAC-11|Api4|TIAP|survivin40	baculoviral IAP repeat-containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66312560-2	chr7	66312060	66313060	+	847.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 6 of 33)	intron (NM_146191, intron 6 of 33)	69164.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	0.0	0.0	4.5	0.0	0.0	4.0
Merged-chr7-123361639-2	chr7	123361139	123362139	+	847.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	8276.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144572058-2	chr3	144571558	144572558	+	847.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053102, intron 1 of 4)	intron (NM_053102, intron 1 of 4)	1631.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116170662-2	chr4	116170162	116171162	+	847.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-2710.0	NM_001099295	67323.0	Mm.45442	NM_001099295	ENSMUSG00000078593	1700042G07Rik	-	RIKEN cDNA 1700042G07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167671233-2	chr2	167670733	167671733	+	847.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9689.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55019546-2	chr13	55019036	55020036	+	847.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033245, intron 1 of 18)	intron (NM_001033245, intron 1 of 18)	1283.0	NM_001206390	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	4.5	43.5	16.0	14.0	11.0	12.0
Merged-chr8-72330574-2	chr8	72330055	72331055	+	847.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11493.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	0.5	9.5	0.0	17.5	0.0	1.0
Merged-chr19-6261706-2	chr19	6261206	6262206	+	847.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_194348, exon 40 of 40)	exon (NM_194348, exon 40 of 40)	-2937.0	NR_029830	723957.0		NR_029830	ENSMUSG00000065582	Mir194-2	Mirn194-2|mir-194-2	microRNA 194-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107365785-2	chr11	107365285	107366285	+	847.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	104935.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17793955-2	chr6	17793455	17794455	+	847.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	intron (NM_022332, intron 1 of 15)	44785.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-82863673-3	chr6	82863181	82864181	+	847.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18172.0	NR_040520	69652.0	Mm.96357	NR_040520	ENSMUSG00000100291	2310069B03Rik	-	RIKEN cDNA 2310069B03 gene	ncRNA	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr2-124624780-2	chr2	124624280	124625280	+	847.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	14484.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77775504-2	chr18	77775004	77776004	+	847.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007505, intron 1 of 11)	B1F2|SINE|Alu	-1619.0	NM_001357531	225745.0	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54329373-2	chr6	54328873	54329873	+	847.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_030024, exon 2 of 2)	exon (NM_030024, exon 2 of 2)	2361.0	NM_030024	78004.0	Mm.41984	NM_030024	ENSMUSG00000045725	Prr15	E130201N16Rik|G90	proline rich 15	protein-coding	1.0	2.5	0.0	0.0	0.0	0.0
Merged-chr12-25097980-4	chr12	25097474	25098474	+	847.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1882.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	49.0	134.5	111.5	80.5	132.0	129.0
Merged-chr5-125381689-2	chr5	125381189	125382189	+	847.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8328.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.5	0.0	0.0	0.0	2.0	4.0
Merged-chr4-101998734-4	chr4	101998232	101999232	+	847.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11892.0	NM_001085520	381536.0	Mm.297685	NM_001085520	ENSMUSG00000078625	Gm12789	-	predicted gene 12789	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167027128-2	chr2	167026628	167027628	+	847.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153065, intron 9 of 20)	intron (NM_153065, intron 9 of 20)	11815.0	NM_153065	228889.0	Mm.295031	NM_153065	ENSMUSG00000017999	Ddx27	C86129	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120878343-1	chr4	120877843	120878843	+	847.5	f1_c57bl6.idr	intron (NM_182929, intron 3 of 7)	intron (NM_182929, intron 3 of 7)	23544.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	1.5	25.0	2.0	2.0	22.0	4.5
Merged-chr18-9709073-2	chr18	9708573	9709573	+	847.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 1 of 9)	intron (NM_130449, intron 1 of 9)	1425.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30559265-4	chr7	30558724	30559724	+	847.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290569, intron 1 of 8)	intron (NM_001290569, intron 1 of 8)	422.0	NM_029377	75660.0	Mm.379242	NM_029377	ENSMUSG00000036845	Lin37	1810054G18Rik	lin-37 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19043179-2	chr10	19042679	19043679	+	847.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-27769.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.0	27.5	14.0	6.0	24.0	12.0
Merged-chr11-20213920-2	chr11	20213420	20214420	+	847.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 1 of 5)	MLTR14|LTR|ERV1	12508.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	7.5	8.5	6.5	8.0	11.5	17.5
Merged-chr17-17877225-2	chr17	17876725	17877725	+	847.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013521, exon 2 of 2)	exon (NM_013521, exon 2 of 2)	6714.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	1.5	4.0	2.5	4.0	4.5	6.0
Merged-chr7-43467727-2	chr7	43467227	43468227	+	847.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290316, intron 6 of 9)	intron (NM_001290316, intron 6 of 9)	4494.0	NM_001290316	75690.0	Mm.30200	NM_001290316	ENSMUSG00000070604	Vsig10l	-	V-set and immunoglobulin domain containing 10 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80055997-4	chr7	80055473	80056473	+	847.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	19284.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	9.0	73.5	61.5	16.0	80.5	59.5
Merged-chr1-58723271-3	chr1	58722730	58723730	+	847.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 1 of 8)	RLTR31D_MM|LTR|ERVK	-7322.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-77285148-3	chr2	77284632	77285632	+	847.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4540.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-93127090-3	chr6	93126575	93127575	+	847.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	186493.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70522219-4	chr8	70521730	70522730	+	847.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029366, intron 1 of 4)	B2_Mm2|SINE|B2	950.0	NM_029366	75620.0	Mm.482129	NM_029366	ENSMUSG00000055553	Kxd1	0610030B01Rik|2810422J05Rik|C78305	KxDL motif containing 1	protein-coding	47.5	42.0	52.5	31.5	81.5	32.5
Merged-chr19-8809375-2	chr19	8808875	8809875	+	847.4166869999999	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027412, exon 4 of 4)	3' UTR (NM_027412, exon 4 of 4)	6845.0	NM_001098237	75291.0	Mm.23423	NM_133759	ENSMUSG00000071661	Zbtb3	4930563M09Rik	zinc finger and BTB domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136116370-4	chr1	136115860	136116860	+	847.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081023, intron 40 of 43)	intron (NM_001081023, intron 40 of 43)	14823.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26498881-4	chr2	26498417	26499417	+	847.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 2 of 33)	intron (NM_008714, intron 2 of 33)	4905.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-21161867-3	chr1	21161332	21162332	+	847.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56743.0	NM_001290679	75712.0	Mm.304763	NM_029398	ENSMUSG00000025933	Tmem14a	5730496E24Rik|C85783|PTD011	transmembrane protein 14A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33685457-3	chr16	33684972	33685972	+	847.3999630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 1 of 14)	intron (NM_175256, intron 1 of 14)	1006.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191421788-6	chr1	191421286	191422286	+	847.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24745.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30167241-3	chr7	30166726	30167726	+	847.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011980, intron 1 of 1)	intron (NM_011980, intron 1 of 1)	2515.0	NM_011980	26465.0	Mm.446516	NM_011980	ENSMUSG00000037029	Zfp146	OZF|Znf146	zinc finger protein 146	protein-coding	50.0	77.5	42.5	9.5	25.0	4.5
Merged-chr12-13215092-4	chr12	13214565	13215565	+	847.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34109.0	NM_134040	104721.0	Mm.251255	NM_134040	ENSMUSG00000037149	Ddx1	AA409185|DBP-RB	DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	protein-coding	2.5	0.0	0.0	2.5	0.0	0.0
Merged-chr9-83536755-4	chr9	83536230	83537230	+	847.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-11608.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	15.0	22.5	29.0	4.5	37.5	26.5
Merged-chr8-69121513-2	chr8	69121080	69122080	+	847.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19373.0	NM_199364	211134.0	Mm.409446	NM_199364	ENSMUSG00000036306	Lzts1	F37|FEZ1|PSD-Zip70	leucine zipper, putative tumor suppressor 1	protein-coding	4.5	5.0	0.5	1.0	4.0	0.5
Merged-chr9-15711179-2	chr9	15710679	15711679	+	847.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_172289, intron 1 of 10)	intron (NM_172289, intron 1 of 10)	1441.0	NM_172289	234967.0	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-74957862-4	chr5	74957364	74958364	+	847.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045866, intron 2 of 4)	intron (NR_045866, intron 2 of 4)	8670.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86974833-3	chr12	86974383	86975383	+	847.3666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13793.0	NM_001080943	238331.0	Mm.185890	NM_001080943	ENSMUSG00000048483	Zdhhc22	Gm262	zinc finger, DHHC-type containing 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37475643-4	chr1	37475274	37476274	+	847.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 5 of 15)	intron (NM_173870, intron 5 of 15)	12831.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102732456-2	chr12	102731956	102732956	+	847.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	11205.0	NM_001142937	64113.0	Mm.291222	NM_022323	ENSMUSG00000096458	Moap1	AA987038|Map-1|Pnma4	modulator of apoptosis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86472447-2	chr1	86471947	86472947	+	847.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46118.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26518550-2	chr17	26518050	26519050	+	847.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10078.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr7-139683905-3	chr7	139683422	139684422	+	847.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302546)	promoter-TSS (NM_001302546)	-107.0	NM_001302546	212124.0	Mm.425507	NM_177212	ENSMUSG00000049571	Cfap46	9330101J02Rik|E030019B06Rik|Gm170|Ttc40	cilia and flagella associated protein 46	protein-coding	0.0	2.5	5.5	0.0	0.0	2.5
Merged-chr7-4470479-2	chr7	4469979	4470979	+	847.3333130000001	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028416, exon 1 of 1)	non-coding (NR_028416, exon 1 of 1)	405.0	NR_028416	320749.0	Mm.396688	NR_028416		D630041G03Rik	-	RIKEN cDNA D630041G03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78262791-3	chr11	78262288	78263288	+	847.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001002004, exon 2 of 39)	exon (NM_001002004, exon 2 of 39)	1034.0	NM_001002004	72503.0	Mm.237103	NM_001002004	ENSMUSG00000010277	2610507B11Rik	AU022687|D11Bhm178e|D11Bhm179e|E1|Kiaa0100|mKIAA0100	RIKEN cDNA 2610507B11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30473067-3	chr2	30472601	30473601	+	847.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030244, exon 1 of 1)	exon (NM_030244, exon 1 of 1)	1098.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-7896252-2	chr17	7895752	7896752	+	847.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29748.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29033885-3	chr17	29033376	29034376	+	847.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036613, intron 1 of 6)	B1_Mm|SINE|Alu	1216.0	NR_036613	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-86066324-3	chr5	86065825	86066825	+	847.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007683)	promoter-TSS (NM_007683)	-742.0	NM_007683	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	69.5	122.0	75.5	73.0	126.0	90.0
Merged-chr3-121657091-3	chr3	121656591	121657591	+	847.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10638.0	NR_036458	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-119088943-2	chr12	119088443	119089443	+	847.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122522.0	NM_029961	77706.0	Mm.261496	NM_029961	ENSMUSG00000072791	Abcb5	9230106F14Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23401167-3	chr13	23400680	23401680	+	847.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22686.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75071535-3	chr11	75071043	75072043	+	847.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 13 of 18)	B3|SINE|B2	-5552.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27337345-3	chr14	27336846	27337846	+	847.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	1309.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-148764898-3	chr1	148764404	148765404	+	847.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6C|LTR|ERVK	1157535.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113035955-3	chr5	113035447	113036447	+	847.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20409.0	NM_177078	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80696674-3	chr10	80696160	80697160	+	847.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	LTR33A|LTR|ERVL	5160.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	9.0	26.5	15.5	17.5	43.0	21.5
Merged-chr16-55778714-3	chr16	55778208	55779208	+	847.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	43430.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30998235-4	chr7	30997755	30998755	+	847.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR22_Mus|LTR|ERVK	16334.0	NM_001242647	76415.0	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46136516-3	chr8	46136024	46137024	+	847.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-12378.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12947345-4	chr18	12946834	12947834	+	847.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5493.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70078725-7	chr14	70078226	70079226	+	847.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289925, intron 2 of 2)	CpG-4626	931.0	NM_001289927	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121872372-3	chr5	121871925	121872925	+	847.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007804, intron 17 of 22)	intron (NM_007804, intron 17 of 22)	23428.0	NM_001359949	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr3-88632306-4	chr3	88631761	88632761	+	847.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 3 of 21)	intron (NM_001198913, intron 3 of 21)	10867.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	1.0	0.0	1.5	2.5	7.0	1.5
Merged-chr14-119009772-2	chr14	119009272	119010272	+	847.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081252, intron 31 of 38)	intron (NM_001081252, intron 31 of 38)	71840.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72237298-2	chr6	72236798	72237798	+	847.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1721.0	NM_153778	71093.0	Mm.87449	NM_153778	ENSMUSG00000037621	Atoh8	4933425C05Rik|Hath6|Math6|bHLHa21|okadin	atonal bHLH transcription factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60381917-4	chr18	60381417	60382417	+	847.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021792, intron 2 of 2)	intron (NM_021792, intron 2 of 2)	5888.0	NM_001146275	60440.0	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	21.0	41.0	28.0	20.5	20.0	35.5
Merged-chr16-23235536-4	chr16	23235020	23236020	+	847.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 1 of 7)	intron (NM_001252505, intron 1 of 7)	9499.0	NM_001252505	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58073220-2	chr15	58072720	58073720	+	847.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009572, intron 1 of 3)	B2_Mm2|SINE|B2	3288.0	NM_001042438	22770.0	Mm.244931	NM_009572	ENSMUSG00000022361	Zhx1	-	zinc fingers and homeoboxes 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127288002-2	chr10	127287502	127288502	+	847.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347171, intron 1 of 12)	intron (NM_001347171, intron 1 of 12)	1016.0	NM_001347171	110962.0	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-60437954-4	chr3	60437512	60438512	+	847.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34818.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11317557-4	chr16	11317061	11318061	+	847.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011608, intron 2 of 2)	L1MA9|LINE|L1	3752.0	NM_011608	21935.0	Mm.12935	NM_011608	ENSMUSG00000022496	Tnfrsf17	BCM|BCMA|Tnfrsf13|Tnfrsf13a	tumor necrosis factor receptor superfamily, member 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20184513-2	chr13	20184010	20185010	+	847.25	f0_balb.idr|f0_c57.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	94003.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	8.0	12.5	13.5	4.0	19.0	8.0
Merged-chr8-117471414-4	chr8	117470931	117471931	+	847.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12166.0	NR_106046	102465653.0		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146638678-4	chr6	146638181	146639181	+	847.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3898.0	NM_025315	108098.0	Mm.26212	NM_025315	ENSMUSG00000030291	Med21	0610007L03Rik|AI449604|D19234|D6Ertd782e|Srb7|Surb7	mediator complex subunit 21	protein-coding	15.5	26.5	28.0	1.5	22.5	11.0
Merged-chr19-8818692-4	chr19	8818148	8819148	+	847.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081196)	promoter-TSS (NM_001081196)	646.0	NM_027412	70387.0	Mm.261082	NM_027412	ENSMUSG00000071660	Ttc9c	2210019E14Rik|6330408J23Rik	tetratricopeptide repeat domain 9C	protein-coding	26.0	46.5	22.0	31.5	59.5	58.0
Merged-chr3-142497438-4	chr3	142496947	142497947	+	847.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153564, intron 1 of 10)	intron (NM_153564, intron 1 of 10)	513.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20873518-4	chr14	20873012	20874012	+	847.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36850.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	3.5	5.5	9.0	0.5	0.0	2.5
Merged-chr3-9605960-4	chr3	9605500	9606500	+	847.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133218, intron 1 of 8)	intron (NM_133218, intron 1 of 8)	4085.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0.0	0.0	2.0	1.0	3.5	2.0
Merged-chr13-21011333-3	chr13	21010831	21011831	+	847.2000119999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012054, intron 19 of 20)	intron (NM_012054, intron 19 of 20)	61968.0	NM_146535	258528.0	Mm.377554	NM_146535	ENSMUSG00000042869	Olfr1370	MOR256-14	olfactory receptor 1370	protein-coding	1.5	0.0	2.0	0.0	7.5	6.5
Merged-chr11-107467308-5	chr11	107466772	107467772	+	847.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	3448.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	11.5	31.5	15.5	17.0	27.0	31.5
Merged-chr8-121927509-4	chr8	121927013	121928013	+	847.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007608, intron 2 of 6)	intron (NM_007608, intron 2 of 6)	17399.0	NM_007608	12352.0	Mm.116761	NM_007608	ENSMUSG00000025317	Car5a	CAV|Ca5a|Car5	carbonic anhydrase 5a, mitochondrial	protein-coding	2.5	2.5	0.0	4.5	4.5	0.0
Merged-chr7-118802923-3	chr7	118802425	118803425	+	847.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027815, intron 21 of 30)	intron (NM_027815, intron 21 of 30)	52688.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40832220-3	chr9	40831705	40832705	+	847.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	30932.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	13.5	41.0	17.5	7.0	3.5	1.5
Merged-chr12-84801783-4	chr12	84801235	84802235	+	847.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013589, intron 16 of 34)	intron (NM_013589, intron 16 of 34)	28465.0	NM_028863	74316.0	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128176971-2	chr7	128176471	128177471	+	847.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029872, intron 2 of 30)	intron (NM_001029872, intron 2 of 30)	3025.0	NM_001029872	381924.0	Mm.334257	NM_001029872	ENSMUSG00000070369	Itgad	Cd11d	integrin, alpha D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83583102-4	chr6	83582595	83583595	+	847.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_078345, intron 6 of 7)	Lx8|LINE|L1	-10591.0	NM_001362080	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85362675-3	chr12	85362174	85363174	+	847.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 1 of 4)	L1MC3|LINE|L1	12043.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105699322-4	chr5	105698819	105699819	+	847.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122768)	promoter-TSS (NM_001122768)	-650.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	53.5	143.5	110.5	49.0	146.0	65.5
Merged-chr1-43447001-4	chr1	43446515	43447515	+	847.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	1264.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-43036067-2	chr10	43035567	43036567	+	847.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175407, intron 5 of 6)	intron (NM_175407, intron 5 of 6)	-44905.0	NR_153349	327749.0	Mm.428887	NR_153349		Gm5079	C230040G06	predicted gene 5079	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102719787-4	chr12	102719291	102720291	+	847.145874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14922.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99715074-4	chr15	99714564	99715564	+	847.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_155353)	TTS (NR_155353)	-2529.0	NM_010271	14555.0	Mm.252391	NM_010271	ENSMUSG00000023019	Gpd1	AI747587|Gdc-1|Gdc1|mKIAA4010	glycerol-3-phosphate dehydrogenase 1 (soluble)	protein-coding	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr11-97432115-4	chr11	97431547	97432547	+	847.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18113.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	2.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38633684-4	chr15	38633136	38634136	+	847.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-28268.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27230904-4	chr14	27230403	27231403	+	847.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 3 of 12)	intron (NM_001289686, intron 3 of 12)	-7107.0	NM_027871	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21854103-3	chr14	21853608	21854608	+	847.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_176925, exon 3 of 3)	3' UTR (NM_176925, exon 3 of 3)	-5198.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	13.5	28.0	14.0	5.5	24.0	12.5
Merged-chr4-47247020-3	chr4	47246536	47247536	+	847.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 3 of 39)	intron (NM_009928, intron 3 of 39)	39024.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35745930-4	chr18	35745453	35746453	+	847.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5399.0	NM_001289592	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	5.0	34.5	31.5	5.5	35.5	17.0
Merged-chr7-118111222-2	chr7	118110775	118111775	+	847.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_170669, intron 3 of 4)	intron (NM_170669, intron 3 of 4)	4872.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	4.0	4.5	10.0	11.5	4.5	13.0
Merged-chr2-102967001-4	chr2	102966501	102967501	+	847.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-65336.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124012126-3	chr5	124011600	124012600	+	847.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	15248.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	67.5	126.5	100.0	42.5	225.0	166.0
Merged-chr2-119799573-6	chr2	119799114	119800114	+	847.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019392)	promoter-TSS (NM_019392)	100.0	NM_019392	22174.0	Mm.2901	NM_019392	ENSMUSG00000027298	Tyro3	AI323366|Brt|Dtk|Etk-2|Rse|Sky|TK19-2|Tif|etk2/tyro3|tk19-1	TYRO3 protein tyrosine kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69945403-4	chr11	69944873	69945873	+	847.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009204, exon 7 of 11)	exon (NM_009204, exon 7 of 11)	2817.0	NM_009204	20528.0	Mm.10661	NM_009204	ENSMUSG00000018566	Slc2a4	GT2|Glut-4|Glut4|twgy	solute carrier family 2 (facilitated glucose transporter), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87378523-3	chr17	87378031	87379031	+	847.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 19 of 19)	intron (NM_028639, intron 19 of 19)	49210.0	NM_029298	75467.0	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-133754348-3	chr3	133753861	133754861	+	847.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-209971.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167129342-2	chr2	167128848	167129848	+	847.041626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008420, intron 1 of 1)	intron (NM_008420, intron 1 of 1)	59470.0	NM_008420	16500.0	Mm.205341	NM_008420	ENSMUSG00000050556	Kcnb1	Kcr1-1|Kv2.1|Shab	potassium voltage gated channel, Shab-related subfamily, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8816832-4	chr17	8816359	8817359	+	847.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011866, intron 1 of 21)	intron (NM_011866, intron 1 of 21)	15114.0	NM_011866	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.0	0.0	3.0	0.0	1.5	1.0
Merged-chr19-4120651-2	chr19	4120151	4121151	+	847.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016666, intron 2 of 6)	intron (NM_016666, intron 2 of 6)	924.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73119141-2	chr14	73118641	73119641	+	847.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23369.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75700147-2	chr2	75699647	75700647	+	847.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_132727, intron 1 of 1)	intron (NR_132727, intron 1 of 1)	4516.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	15.0	15.5	7.0	21.0	7.0	8.0
Merged-chr2-36210676-2	chr2	36210176	36211176	+	847.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19750.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74829260-2	chr11	74828760	74829760	+	847.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1664.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	11.5	43.5	34.5	43.5	76.0	53.0
Merged-chr13-43164360-1	chr13	43163860	43164860	+	847.0	f0_balb.idr	intron (NM_001252639, intron 4 of 7)	intron (NM_001252639, intron 4 of 7)	7141.0	NM_001252639	67046.0	Mm.269213	NM_025935	ENSMUSG00000021368	Tbc1d7	2610009C09Rik	TBC1 domain family, member 7	protein-coding	0.0	0.0	0.0	0.0	23.5	3.0
Merged-chr6-134917046-5	chr6	134916476	134917476	+	847.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3425.0	NM_009875	12576.0	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	24.5	55.5	53.0	25.0	48.0	42.0
Merged-chr2-166084499-1	chr2	166083999	166084999	+	847.0	f1_balb.idr	intron (NM_001252579, intron 8 of 20)	intron (NM_001252579, intron 8 of 20)	70786.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	3.0	0.0	2.5	10.0	0.0	1.5
Merged-chr1-164061450-4	chr1	164060937	164061937	+	847.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011346)	promoter-TSS (NM_011346)	-639.0	NM_001164059	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54439173-3	chr11	54438643	54439643	+	847.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173753, intron 1 of 17)	intron (NM_173753, intron 1 of 17)	964.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85338499-2	chr12	85337999	85338999	+	847.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145138, intron 1 of 21)	(CAAAAA)n|Simple_repeat|Simple_repeat	863.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73442275-3	chr2	73441795	73442795	+	847.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289722, intron 3 of 7)	ORR1G|LTR|ERVL-MaLR	11594.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63127379-3	chr14	63126974	63127974	+	847.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	5012.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63381467-2	chr14	63380967	63381967	+	847.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007549, intron 6 of 12)	intron (NM_007549, intron 6 of 12)	35720.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-82394099-2	chr3	82393599	82394599	+	847.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081230, exon 14 of 14)	3' UTR (NM_001081230, exon 14 of 14)	35912.0	NM_001356457	213582.0	Mm.271269	NM_001081230	ENSMUSG00000033900	Map9	5033421J10Rik|5330427D05Rik|ASAP|Mtap9	microtubule-associated protein 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5068119-3	chr19	5067611	5068611	+	847.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054042)	promoter-TSS (NM_054042)	33.0	NM_054042	70445.0	Mm.29597	NM_054042	ENSMUSG00000056481	Cd248	2610111G01Rik|AI842296|Cd164l1|Tem1	CD248 antigen, endosialin	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr2-178253075-2	chr2	178252575	178253575	+	847.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001007154, intron 1 of 12)	intron (NM_001007154, intron 1 of 12)	59991.0	NM_001007154	74189.0	Mm.44413	NM_028806	ENSMUSG00000027525	Phactr3	1500003N10Rik|4930415A02Rik|H17739|Scapin1|Scapinin|mKIAA4224	phosphatase and actin regulator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-25231008-2	chr3	25230508	25231508	+	847.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEf|LINE|L1	-447002.0	NM_001326288	635702.0	Mm.448351	NM_001326288	ENSMUSG00000102758	Naaladl2	2810043G22Rik|EG635702|Gm1021	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-24141700-2	chr11	24141200	24142200	+	847.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016707, intron 2 of 4)	intron (NM_016707, intron 2 of 4)	61005.0	NM_001159290	14025.0	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	3.0	7.0	2.5	0.0	0.0	2.5
Merged-chr2-26447858-2	chr2	26447358	26448358	+	847.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152209, intron 1 of 2)	intron (NR_152209, intron 1 of 2)	1934.0	NR_152207	100125929.0	Mm.392411	NR_152207		0610009E02Rik	-	RIKEN cDNA 0610009E02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136693501-1	chr6	136693001	136694001	+	847.0	f0_balb.idr	Intergenic	Intergenic	-31608.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	1.0	23.5	20.0	11.5	5.0	9.0
Merged-chr6-77013147-1	chr6	77012647	77013647	+	847.0	f1_balb.idr	intron (NM_145732, intron 10 of 18)	intron (NM_145732, intron 10 of 18)	-229330.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	0.5	1.0	2.0	0.0	2.5	0.0
Merged-chr2-91279005-3	chr2	91278466	91279466	+	847.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175123, intron 8 of 8)	intron (NM_175123, intron 8 of 8)	13851.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr11-69764697-2	chr11	69764198	69765198	+	847.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1214.0	NM_029348	75580.0	Mm.426361	NM_029348	ENSMUSG00000018750	Zbtb4	2310026P19Rik|9230111I22Rik|mKIAA1538	zinc finger and BTB domain containing 4	protein-coding	0.0	3.5	0.0	0.0	3.5	1.0
Merged-chr2-27273601-2	chr2	27273101	27274101	+	847.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 23 of 29)	intron (NR_133905, intron 23 of 29)	-26298.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150845871-3	chr2	150845342	150846342	+	847.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 4 of 12)	intron (NR_151505, intron 4 of 12)	-3272.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107553664-2	chr9	107553164	107554164	+	847.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019713)	promoter-TSS (NM_019713)	-919.0	NM_019713	56289.0	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	2.0	30.5	27.0	10.5	28.0	27.5
Merged-chr13-43784040-2	chr13	43783540	43784540	+	847.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1072.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-75706264-2	chr13	75705761	75706761	+	847.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-1223.0	NM_138953	192657.0	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117500858-2	chr5	117500405	117501405	+	847.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 2 of 19)	intron (NM_001312914, intron 2 of 19)	86903.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0.0	0.0	0.5	0.0	3.5	0.5
Merged-chr8-22654595-2	chr8	22654095	22655095	+	847.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1158.0	NM_011130	18970.0	Mm.123211	NM_011130	ENSMUSG00000031536	Polb	A430088C08Rik	polymerase (DNA directed), beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137632510-2	chr5	137632010	137633010	+	847.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033148, intron 1 of 21)	intron (NR_033148, intron 1 of 21)	3387.0	NR_033148	100316903.0	Mm.200763	NR_033148		Gm20605	Lrch4-sap25	predicted gene 20605	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120719162-2	chr8	120718662	120719662	+	847.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-17196.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11016576-2	chr16	11016076	11017076	+	847.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7678.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0.0	0.0	0.0	5.0	0.0	1.0
Merged-chr6-116712268-4	chr6	116711762	116712762	+	847.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178768, intron 1 of 4)	intron (NM_178768, intron 1 of 4)	4496.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43801453-2	chr13	43800953	43801953	+	847.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009856, intron 4 of 4)	intron (NM_009856, intron 4 of 4)	16341.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-36975267-2	chr10	36974767	36975767	+	847.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008229, intron 1 of 13)	intron (NM_008229, intron 1 of 13)	723.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65781370-2	chr5	65780870	65781870	+	847.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024917, intron 3 of 19)	ORR1F|LTR|ERVL-MaLR	17849.0	NM_001024917	333789.0	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100552261-2	chr11	100551761	100552761	+	847.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028918, intron 5 of 11)	ORR1F|LTR|ERVL-MaLR	6629.0	NM_028918	74407.0	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-67074079-3	chr6	67073580	67074580	+	847.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040278, intron 4 of 6)	intron (NR_040278, intron 4 of 6)	-36673.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-6530051-2	chr18	6529551	6530551	+	847.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13943.0	NM_007935	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	0.5	1.0	5.0	0.0	3.0	4.0
Merged-chr1-130987648-3	chr1	130987155	130988155	+	847.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-32190.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19108530-2	chr10	19108021	19109021	+	847.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger6a|DNA|TcMar-Tigger	-33228.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	1.0	2.5	4.0	3.0	4.5	3.5
Merged-chr17-26793305-2	chr17	26792805	26793805	+	847.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172149)	TTS (NM_172149)	12226.0	NM_172149	224630.0	Mm.21795	NM_172149	ENSMUSG00000024191	Bnip1	2010005M06Rik|5930429G21Rik|Sec20	BCL2/adenovirus E1B interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr2-27278748-2	chr2	27278248	27279248	+	847.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 19 of 29)	intron (NR_133905, intron 19 of 29)	-31445.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118668719-3	chr9	118668211	118669211	+	847.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133721, exon 9 of 28)	exon (NM_133721, exon 9 of 28)	-42981.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31018511-2	chr14	31018011	31019011	+	847.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081251)	promoter-TSS (NM_001081251)	620.0	NM_153547	30877.0	Mm.88512	NM_153547	ENSMUSG00000042354	Gnl3	Ns	guanine nucleotide binding protein-like 3 (nucleolar)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36692395-1	chr18	36691895	36692895	+	847.0	f1_c57bl6.idr	intron (NM_172831, intron 5 of 12)	intron (NM_172831, intron 5 of 12)	3530.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	1.5	1.0	1.5	1.5	2.0	2.0
Merged-chr2-29873898-2	chr2	29873398	29874398	+	847.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207298, intron 5 of 11)	intron (NM_207298, intron 5 of 11)	4404.0	NM_207298	99151.0	Mm.296336	NM_207298	ENSMUSG00000039787	Cercam	2600006K01Rik|AL024097|Ceecam1	cerebral endothelial cell adhesion molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104780094-3	chr3	104779579	104780579	+	847.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027982)	promoter-TSS (NM_027982)	-977.0	NM_027982	71887.0	Mm.379204	NM_027982	ENSMUSG00000002228	Ppm1j	2310008J22Rik|PP2Czeta|Ppp2cz	protein phosphatase 1J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120625932-2	chr11	120625432	120626432	+	847.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153056)	promoter-TSS (NM_153056)	-930.0	NM_153056	209011.0	Mm.292957	NM_153056	ENSMUSG00000025138	Sirt7	-	sirtuin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5866425-4	chr13	5865932	5866932	+	847.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011803, intron 2 of 3)	intron (NM_011803, intron 2 of 3)	4943.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-13746543-1	chr17	13746043	13747043	+	847.0	f0_balb.idr	intron (NM_022311, intron 1 of 2)	intron (NM_022311, intron 1 of 2)	-13998.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-144928079-2	chr4	144927579	144928579	+	847.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001172424, exon 7 of 7)	3' UTR (NM_001172424, exon 7 of 7)	34942.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30764342-4	chr16	30763844	30764844	+	846.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	164621.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53939551-4	chr19	53939046	53940046	+	846.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195348, intron 2 of 3)	intron (NM_001195348, intron 2 of 3)	-4760.0	NM_001168505	56392.0	Mm.228669	NM_019658	ENSMUSG00000024976	Shoc2	AU017287|Sur8|mKIAA0862	soc-2 (suppressor of clear) homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99009751-4	chr9	99009244	99010244	+	846.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080776, intron 6 of 7)	intron (NM_001080776, intron 6 of 7)	23371.0	NM_001122851	23873.0	Mm.74605	NM_011810	ENSMUSG00000032463	Faim	-	Fas apoptotic inhibitory molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58225890-4	chr11	58225396	58226396	+	846.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10919.0	NM_019440	54396.0	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	13.5	8.0	13.5	1.5	14.5	18.5
Merged-chr2-165062675-3	chr2	165062173	165063173	+	846.9166869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_170704, exon 3 of 9)	exon (NM_170704, exon 3 of 9)	7037.0	NM_011611	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	2.5	10.5	10.0	0.0	2.0	3.0
Merged-chr17-36843918-3	chr17	36843421	36844421	+	846.9166869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025599, intron 2 of 9)	intron (NM_001025599, intron 2 of 9)	6775.0	NM_001286726	22670.0	Mm.34587	NM_030698	ENSMUSG00000024457	Trim26	AI462198|Zfp173|Zfp1736	tripartite motif-containing 26	protein-coding	3.0	2.5	9.0	0.0	23.0	14.5
Merged-chr5-124354800-4	chr5	124354318	124355318	+	846.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013812)	promoter-TSS (NM_013812)	-190.0	NM_013812	13445.0	Mm.391838	NM_013812	ENSMUSG00000029394	Cdk2ap1	Apc10|Cdkap1|DORC1|Doc1|ST19|doc-1|p12	CDK2 (cyclin-dependent kinase 2)-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8722629-4	chr15	8722132	8723132	+	846.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11825.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24564810-4	chr7	24564321	24565321	+	846.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360168, intron 4 of 17)	intron (NM_001360168, intron 4 of 17)	13334.0	NM_001360169	22594.0	Mm.4347	NM_009532	ENSMUSG00000051768	Xrcc1	Xrcc-1	X-ray repair complementing defective repair in Chinese hamster cells 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-119548845-2	chr1	119548345	119549345	+	846.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145506, exon 25 of 25)	3' UTR (NM_145506, exon 25 of 25)	-12680.0	NR_126486	320069.0	Mm.406320	NR_126486	ENSMUSG00000101731	3830432H09Rik	-	RIKEN cDNA 3830432H09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23231852-3	chr16	23231291	23232291	+	846.833374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 1 of 7)	intron (NM_001252505, intron 1 of 7)	5770.0	NM_001252505	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-24476673-2	chr19	24476173	24477173	+	846.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_026520, exon 1 of 1)	exon (NM_026520, exon 1 of 1)	801.0	NM_026520	68034.0	Mm.440181	NM_026520	ENSMUSG00000074922	Fam122a	2410124L17Rik|2900009I07Rik|Gm9849	family with sequence similarity 122, member A	protein-coding	0.0	4.5	3.5	0.0	3.0	4.5
Merged-chr11-83224927-3	chr11	83224426	83225426	+	846.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015519, intron 3 of 3)	RMER17C|LTR|ERVK	1350.0	NR_015519	100043636.0	Mm.295569	NR_015519	ENSMUSG00000087107	AI662270	AW496474	expressed sequence AI662270	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-15592327-3	chr16	15591829	15592829	+	846.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159351, intron 1 of 2)	B1F|SINE|Alu	2189.0	NM_001159351	70620.0	Mm.235407	NM_023585	ENSMUSG00000022674	Ube2v2	1110021H13Rik|4632410D19Rik|5730524P06Rik|6820402M05|AI848315|C81524|MMS2	ubiquitin-conjugating enzyme E2 variant 2	protein-coding	1.0	3.5	0.5	0.5	15.5	2.0
Merged-chr6-72348647-4	chr6	72348093	72349093	+	846.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026696, exon 3 of 4)	exon (NM_026696, exon 3 of 4)	1276.0	NM_026696	68364.0	Mm.52711	NM_026696	ENSMUSG00000058706	0610030E20Rik	1500031N04Rik|2810411C16Rik|AI461894	RIKEN cDNA 0610030E20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-24650594-1	chr12	24650094	24651094	+	846.8333130000001	f1_balb.idr	promoter-TSS (NM_178357)	promoter-TSS (NM_178357)	-777.0	NM_178357	194655.0	Mm.9616	NM_178357	ENSMUSG00000020653	Klf11	9830142A17|D12Ertd427e|Tieg2|Tieg2b|Tieg3	Kruppel-like factor 11	protein-coding	83.0	176.0	197.5	54.5	197.0	185.5
Merged-chr13-16011930-3	chr13	16011426	16012426	+	846.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008380)	promoter-TSS (NM_008380)	75.0	NM_008380	16323.0	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-16101580-4	chr4	16101122	16102122	+	846.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62021.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-113399115-3	chr2	113398622	113399622	+	846.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285458, intron 2 of 16)	intron (NM_001285458, intron 2 of 16)	-41942.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11475208-3	chr2	11474718	11475718	+	846.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177752, intron 13 of 13)	intron (NM_001177752, intron 13 of 13)	26872.0	NM_001177754	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41576049-4	chr10	41575543	41576543	+	846.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045341, exon 3 of 4)	non-coding (NR_045341, exon 3 of 4)	8027.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113542633-4	chr13	113542174	113543174	+	846.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39830.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40830119-3	chr4	40829571	40830571	+	846.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	20067.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-51666865-3	chr12	51666346	51667346	+	846.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172098, intron 1 of 15)	intron (NM_001172098, intron 1 of 15)	-24120.0	NM_001329699	11782.0	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84885173-3	chr3	84884678	84885678	+	846.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177773, intron 3 of 13)	intron (NM_001177773, intron 3 of 13)	21033.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.0	1.0	0.5	0.0	1.0	1.0
Merged-chr14-102983991-2	chr14	102983491	102984491	+	846.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1354.0	NM_177715	239217.0	Mm.246466	NM_177715	ENSMUSG00000098557	Kctd12	AU046135|AW538430|Pfet1|Pfetin	potassium channel tetramerisation domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-103719353-4	chr5	103718848	103719848	+	846.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34814.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103247747-4	chr11	103247246	103248246	+	846.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	19655.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84488051-3	chr2	84487542	84488542	+	846.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	-11267.0	NM_001177320	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	6.5	13.5	22.0	0.0	6.0	4.0
Merged-chr3-97297955-4	chr3	97297455	97298455	+	846.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70591.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-97815116-2	chr4	97814616	97815616	+	846.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	37490.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-101956627-2	chr12	101956127	101957127	+	846.7333369999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_029705, intron 1 of 10)	RMER10A|LTR|ERVL	1616.0	NM_029705	110616.0	Mm.271914	NM_029705	ENSMUSG00000021189	Atxn3	2210008M02Rik|AI463012|AI647473|ATX3|MJD1|Mjd|Sca3|ataxin-3	ataxin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-98873597-3	chr14	98873133	98874133	+	846.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	172503.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94607583-3	chr16	94607087	94608087	+	846.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-3832.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5035224-4	chr2	5034743	5035743	+	846.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356487, intron 7 of 13)	intron (NM_001356487, intron 7 of 13)	-22452.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46738627-2	chr8	46738127	46739127	+	846.7000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NR_045750, intron 1 of 2)	intron (NR_045750, intron 1 of 2)	888.0	NR_045750	100503498.0	Mm.187358	NR_045750	ENSMUSG00000097534	Gm16675	-	predicted gene, 16675	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182516863-4	chr1	182516251	182517251	+	846.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009794, intron 1 of 20)	intron (NM_009794, intron 1 of 20)	859.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25117779-1	chr10	25117279	25118279	+	846.6666869999999	f0_balb.idr	Intergenic	Intergenic	82391.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16067402-3	chr19	16066903	16067903	+	846.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65428.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	10.0	2.5	0.5	2.5	0.0	1.5
Merged-chr3-52048325-3	chr3	52047839	52048839	+	846.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	56667.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31511576-2	chr17	31511076	31512076	+	846.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_021322, intron 1 of 10)	intron (NM_021322, intron 1 of 10)	911.0	NM_021322	57773.0	Mm.143771	NM_021322	ENSMUSG00000024037	Wdr4	AI415180|AI448349|D530049K22Rik|Wh	WD repeat domain 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97460677-3	chr6	97460180	97461180	+	846.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	Kanga2_a|DNA|TcMar-Tc2	-1394.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	91.5	196.0	183.5	84.0	196.0	154.0
Merged-chr14-45676823-4	chr14	45676324	45677324	+	846.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-18681.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	27.5	57.5	38.5	34.5	79.5	52.0
Merged-chr14-33808708-4	chr14	33808213	33809213	+	846.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131113, intron 3 of 3)	MER121|DNA|TcMar?	2570.0	NR_131114	218902.0	Mm.107791	NR_131113	ENSMUSG00000115751	4930503F20Rik	4930453C15	RIKEN cDNA 4930503F20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138193925-3	chr5	138193425	138194425	+	846.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177878)	promoter-TSS (NM_177878)	-389.0	NM_177878	330216.0	Mm.19719	NM_177878	ENSMUSG00000049285	Mblac1	-	metallo-beta-lactamase domain containing 1	protein-coding	24.5	76.5	66.0	43.5	97.0	58.5
Merged-chr11-118739042-3	chr11	118738562	118739562	+	846.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024931, intron 2 of 14)	intron (NM_001024931, intron 2 of 14)	21979.0	NM_001285438	52897.0	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140225312-3	chr5	140224814	140225814	+	846.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152617, intron 10 of 16)	intron (NR_152617, intron 10 of 16)	-50396.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0.0	7.0	3.0	0.0	0.0	3.5
Merged-chr5-121850359-2	chr5	121849859	121850859	+	846.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359950, intron 1 of 2)	intron (NM_001359950, intron 1 of 2)	1362.0	NM_001359949	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	5.0	4.0	0.0	1.5	0.0	0.0
Merged-chr8-120704412-3	chr8	120703927	120704927	+	846.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31931.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86066946-3	chr1	86066431	86067431	+	846.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027357, intron 1 of 24)	intron (NM_027357, intron 1 of 24)	2312.0	NM_027357	70247.0	Mm.280013	NM_027357	ENSMUSG00000026229	Psmd1	2410026J11Rik|P112|S1	proteasome (prosome, macropain) 26S subunit, non-ATPase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86908473-4	chr11	86907986	86908986	+	846.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	85276.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80401106-3	chr10	80400591	80401591	+	846.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1560.0	NM_001306143	17192.0	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154907972-4	chr4	154907484	154908484	+	846.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8941.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16802864-2	chr19	16802364	16803364	+	846.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21931.0	NM_173028	271564.0	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr7-17066575-4	chr7	17066046	17067046	+	846.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4119.0	NM_001162950	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	1.5	2.0	3.0	11.0	2.0	1.5
Merged-chr19-46563152-4	chr19	46562653	46563653	+	846.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355233, intron 1 of 6)	intron (NM_001355233, intron 1 of 6)	10029.0	NM_001355233	56350.0	Mm.22085	NM_019718	ENSMUSG00000025035	Arl3	-	ADP-ribosylation factor-like 3	protein-coding	2.5	15.0	8.5	3.0	3.0	13.0
Merged-chr17-57220859-2	chr17	57220395	57221395	+	846.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_009778, intron 17 of 40)	intron (NM_009778, intron 17 of 40)	-3667.0	NR_105944	102465591.0		NR_105944	ENSMUSG00000099066	Mir6978	Gm27858|mmu-mir-6978	microRNA 6978	ncRNA	3.5	0.0	0.0	0.0	0.0	0.0
Merged-chr3-137823514-4	chr3	137823013	137824013	+	846.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39898.0	NR_105801	102466638.0		NR_105801	ENSMUSG00000099011	Mir6380	Gm27356|mmu-mir-6380	microRNA 6380	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34041025-4	chr6	34040539	34041539	+	846.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028886, intron 3 of 19)	MER5A|DNA|hAT-Charlie	11591.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132130655-3	chr1	132130129	132131129	+	846.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008795, intron 1 of 15)	intron (NM_008795, intron 1 of 15)	9056.0	NM_008795	18557.0	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-23180213-2	chr8	23179713	23180713	+	846.599976	f1_balb.idr|f1_c57bl6.idr	exon (NM_018743, exon 8 of 13)	exon (NM_018743, exon 8 of 13)	26942.0	NM_029002	74561.0	Mm.290028	NM_029002	ENSMUSG00000063672	Nkx6-3	9130417I07Rik|Nkx6.3	NK6 homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36485449-5	chr5	36484928	36485928	+	846.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025725, exon 1 of 1)	exon (NM_025725, exon 1 of 1)	840.0	NM_025725	66717.0	Mm.42368	NM_025725	ENSMUSG00000050677	Ccdc96	4921513E08Rik	coiled-coil domain containing 96	protein-coding	0.0	4.0	6.0	2.5	0.5	1.0
Merged-chr8-105279146-2	chr8	105278646	105279646	+	846.583374	f1_balb.idr|f1_c57bl6.idr	exon (NM_030152, exon 2 of 4)	exon (NM_030152, exon 2 of 4)	2699.0	NM_030152	78688.0	Mm.475715	NM_030152	ENSMUSG00000014776	Nol3	ARC|B430311C09Rik|MYC|NOP|Nop30	nucleolar protein 3 (apoptosis repressor with CARD domain)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34776065-4	chr2	34775577	34776577	+	846.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_022310, exon 8 of 8)	exon (NM_022310, exon 8 of 8)	3987.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66810248-4	chr15	66809742	66810742	+	846.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029841, intron 1 of 7)	intron (NM_001029841, intron 1 of 7)	21587.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.0	0.5	5.5	0.0	1.5	3.5
Merged-chr2-54085680-3	chr2	54085213	54086213	+	846.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023396)	promoter-TSS (NM_023396)	-161.0	NM_023396	67874.0	Mm.27086	NM_023396	ENSMUSG00000075334	Rprm	2410012A13Rik|Reprimo	reprimo, TP53 dependent G2 arrest mediator candidate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5081075-3	chr17	5080574	5081574	+	846.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 2 of 19)	intron (NM_001085355, intron 2 of 19)	86000.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142443539-4	chr3	142443029	142444029	+	846.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47833.0	NM_019808	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	5.5	2.0	12.0	0.0	2.5	1.0
Merged-chr7-30353590-4	chr7	30353127	30354127	+	846.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9145.0	NM_175478	233067.0	Mm.23157	NM_175478	ENSMUSG00000036957	Lrfn3	A530045B06Rik|SALM4	leucine rich repeat and fibronectin type III domain containing 3	protein-coding	0.0	0.5	0.5	2.0	0.0	0.0
Merged-chr5-143499886-3	chr5	143499388	143500388	+	846.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 11 of 14)	intron (NM_144915, intron 11 of 14)	28105.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-79728439-4	chr7	79727939	79728939	+	846.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175640, intron 3 of 8)	intron (NM_175640, intron 3 of 8)	4337.0	NM_175640	103968.0	Mm.254917	NM_175640	ENSMUSG00000030546	Plin1	6030432J05Rik|Peri|Plin	perilipin 1	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr13-13950827-4	chr13	13950415	13951415	+	846.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3759.0	NM_001362404	97884.0	Mm.21686	NM_178640	ENSMUSG00000039242	B3galnt2	A930105D20Rik|C80633|D230016N13Rik	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146785570-4	chr5	146785061	146786061	+	846.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	(GGA)n|Simple_repeat|Simple_repeat	9395.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	4.5	29.0	22.0	3.0	24.0	8.5
Merged-chr17-36826117-2	chr17	36825581	36826581	+	846.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	-11065.0	NM_001025599	22670.0	Mm.34587	NM_030698	ENSMUSG00000024457	Trim26	AI462198|Zfp173|Zfp1736	tripartite motif-containing 26	protein-coding	1.5	3.0	0.0	1.5	3.0	1.0
Merged-chr10-117920528-2	chr10	117920028	117921028	+	846.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger5b|DNA|TcMar-Tigger	-4931.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154570669-4	chr2	154570177	154571177	+	846.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007891)	promoter-TSS (NM_007891)	-785.0	NM_007891	13555.0	Mm.18036	NM_007891	ENSMUSG00000027490	E2f1	E2F-1|Tg(Wnt1-cre)2Sor|mKIAA4009	E2F transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6414243-2	chr11	6413743	6414743	+	846.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1627.0	NM_008907	268373.0	Mm.5246	NM_008907	ENSMUSG00000071866	Ppia	2700098C05|Cphn|CyP-18|CypA	peptidylprolyl isomerase A	protein-coding	5.5	0.0	0.5	5.5	0.0	0.5
Merged-chr4-137179015-2	chr4	137178515	137179515	+	846.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13949.0	NR_040443	100503595.0	Mm.421314	NR_040443	ENSMUSG00000085833	Gm13003	-	predicted gene 13003	ncRNA	0.0	1.0	6.5	8.5	6.0	2.0
Merged-chr10-66905345-2	chr10	66904845	66905845	+	846.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15039.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73457195-2	chr2	73456695	73457695	+	846.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-3306.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-12937352-2	chr11	12936852	12937852	+	846.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-472392.0	NM_001282993	12808.0	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr15-101971972-3	chr15	101971453	101972453	+	846.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17666.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61577386-2	chr11	61576886	61577886	+	846.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252188, intron 1 of 10)	intron (NM_001252188, intron 1 of 10)	2301.0	NM_010148	13855.0	Mm.139695	NM_010148	ENSMUSG00000001036	Epn2	9530051D10Rik|AA536924|Ibp2	epsin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119978386-4	chr9	119977964	119978964	+	846.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153287, intron 1 of 4)	intron (NM_153287, intron 1 of 4)	4559.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3779534-2	chr4	3779034	3780034	+	846.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	56121.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	2.5	3.0	7.0	5.0	4.5	3.5
Merged-chr6-22343369-4	chr6	22342882	22343882	+	846.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138587, intron 1 of 9)	intron (NM_138587, intron 1 of 9)	12699.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10275543-2	chr19	10275043	10276043	+	846.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	ID_B1|SINE|B4	29334.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55568518-2	chr12	55568018	55569018	+	846.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3313.0	NM_001277340	79459.0	Mm.392781	NM_001277340	ENSMUSG00000063129	Aldoart2	4933425L11Rik|Aldo1-ps1|Aldoa-ps1	aldolase 1 A, retrogene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44987997-2	chr7	44987597	44988597	+	846.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045266, intron 1 of 1)	B1_Mus2|SINE|Alu	1197.0	NR_045266	100502630.0	Mm.490013	NR_045266	ENSMUSG00000087138	Gm15545	-	predicted gene 15545	ncRNA	3.5	1.0	2.5	1.0	10.0	2.5
Merged-chr15-58273124-4	chr15	58272632	58273632	+	846.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51037.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-38070739-2	chr7	38070240	38071240	+	846.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	36750.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	0.0	0.0	3.0	6.5	19.5	2.0
Merged-chr14-31189983-2	chr14	31189483	31190483	+	846.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347583, intron 6 of 13)	B1_Mus1|SINE|Alu	16843.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45125708-2	chr7	45125205	45126205	+	846.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_000003)	TTS (NR_000003)	730.0	NR_000003	27211.0		NR_000003	ENSMUSG00000065818	Snord35a	Rnu35a|U35|U35A	small nucleolar RNA, C/D box 35A	snoRNA	1.5	1.5	7.0	10.0	0.5	2.5
Merged-chr11-52073123-2	chr11	52072623	52073623	+	846.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166654, intron 13 of 13)	RSINE1|SINE|B4	-25701.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7335913-2	chr19	7335426	7336426	+	846.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080388, intron 1 of 16)	intron (NM_001080388, intron 1 of 16)	5934.0	NM_001080389	13728.0	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3687286-2	chr12	3686786	3687786	+	846.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 9 of 17)	intron (NM_001162465, intron 9 of 17)	114302.0	NM_007886	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-58976472-2	chr4	58975972	58976972	+	846.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025968, intron 5 of 9)	intron (NM_025968, intron 5 of 9)	10606.0	NM_025968	67103.0	Mm.34497	NM_025968	ENSMUSG00000028378	Ptgr1	2510002C21Rik|Ltb4dh|Zadh3	prostaglandin reductase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132788003-3	chr7	132787495	132788495	+	846.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	-1060.0	NM_175268	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85364700-5	chr12	85364210	85365210	+	846.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 1 of 4)	MTD|LTR|ERVL-MaLR	10007.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134615653-2	chr4	134615153	134616153	+	846.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 2 of 11)	B4A|SINE|B4	-47802.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-41647067-2	chr15	41646567	41647567	+	846.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 2 of 17)	intron (NR_152565, intron 2 of 17)	-141928.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98745816-2	chr10	98745316	98746316	+	846.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-168826.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136201266-2	chr5	136200766	136201766	+	846.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2312.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-84031467-4	chr6	84030964	84031964	+	846.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310152, intron 1 of 53)	MTD|LTR|ERVL-MaLR	12078.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-44835287-4	chr14	44834781	44835781	+	846.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24094.0	NM_008962	19214.0	Mm.5105	NM_008962	ENSMUSG00000071489	Ptgdr	DP|PGD	prostaglandin D receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-101810814-3	chr2	101810332	101811332	+	846.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	-13125.0	NM_001083810	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	0.0	5.0	1.0	0.0	9.0	0.5
Merged-chr2-79193998-3	chr2	79193497	79194497	+	846.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61429.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28442003-2	chr7	28441503	28442503	+	846.444458	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039192, intron 3 of 6)	B1_Mur3|SINE|Alu	1066.0	NM_001039192	63986.0	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-48681147-4	chr4	48680655	48681655	+	846.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17641.0	NM_026509	68016.0	Mm.133444	NM_026509	ENSMUSG00000028348	Cavin4	2310039E09Rik|Murc	caveolae associated 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84127084-4	chr15	84126586	84127586	+	846.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3911.0	NM_029427	75772.0	Mm.159565	NM_029427	ENSMUSG00000018868	Pnpla5	4833426H19Rik|GS2L	patatin-like phospholipase domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8869773-2	chr17	8869273	8870273	+	846.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347321, intron 1 of 21)	intron (NM_001347321, intron 1 of 21)	19788.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70682445-2	chr14	70681945	70682945	+	846.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_023045, intron 17 of 27)	intron (NM_023045, intron 17 of 27)	25590.0	NM_001359888	65246.0	Mm.152987	NM_023045	ENSMUSG00000022100	Xpo7	4930506C02Rik|BB164534|Ranbp16|exp7	exportin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77353581-2	chr10	77353081	77354081	+	846.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024838, intron 2 of 11)	intron (NM_001024838, intron 2 of 11)	64692.0	NM_130895	110532.0	Mm.276815	NM_130895	ENSMUSG00000020262	Adarb1	1700057H01Rik|AW124433|AW558573|Adar2|BB220382|D10Bwg0447e|Red1	adenosine deaminase, RNA-specific, B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19562823-3	chr10	19562318	19563318	+	846.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29131.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	2.0	3.0	9.5	13.5	2.5	5.0
Merged-chr16-92853779-3	chr16	92853270	92854270	+	846.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27696.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-192745218-4	chr1	192744686	192745686	+	846.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 3 of 11)	intron (NM_144881, intron 3 of 11)	26033.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	12.0	23.0	5.5	3.0	6.0	3.5
Merged-chr9-14501693-2	chr9	14501193	14502193	+	846.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_023153, intron 1 of 6)	intron (NM_023153, intron 1 of 6)	1074.0	NM_023153	66070.0	Mm.245938	NM_023153	ENSMUSG00000004096	Cwc15	0610040D20Rik|2900052N06Rik|Ed1|c11orf5|mED1	CWC15 spliceosome-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124438528-4	chr5	124438087	124439087	+	846.3660890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1343.0	NM_030241	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106082494-6	chr11	106081920	106082920	+	846.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2482.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-3999356-4	chr15	3998862	3999862	+	846.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045740, intron 2 of 2)	RLTR17|LTR|ERVK	3323.0	NR_045740	328489.0	Mm.447020	NR_045740	ENSMUSG00000097662	Gm2093	100039196|A630020A06	predicted gene 2093	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-49777658-4	chr18	49777146	49778146	+	846.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22045.0	NM_026854	68857.0	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-4414578-2	chr10	4414043	4415043	+	846.333374	f0_c57.idr|f1_c57bl6.idr	non-coding (NR_002891, exon 6 of 12)	non-coding (NR_002891, exon 6 of 12)	14623.0	NR_002891	433224.0	Mm.153111	NR_002891	ENSMUSG00000112693	Gm5512	EG433224	required for meiotic nuclear division 1 pseudogene	pseudo	8.5	4.5	17.0	0.5	2.5	6.0
Merged-chr18-77708579-4	chr18	77708083	77709083	+	846.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178670, intron 1 of 4)	intron (NM_178670, intron 1 of 4)	5427.0	NM_178670	212163.0	Mm.23293	NM_178670	ENSMUSG00000047466	8030462N17Rik	Akd2|Ark2N	RIKEN cDNA 8030462N17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98927930-2	chr15	98927430	98928430	+	846.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	6460.0	NM_011654	22143.0	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127013680-2	chr7	127013180	127014180	+	846.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_080638, intron 1 of 14)	B1F|SINE|Alu	914.0	NM_080638	78388.0	Mm.228797	NM_080638	ENSMUSG00000030681	Mvp	2310009M24Rik|LRP|VAULT1	major vault protein	protein-coding	1.5	9.5	7.0	3.5	11.5	1.5
Merged-chr15-77757106-4	chr15	77756592	77757592	+	846.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357895)	promoter-TSS (NM_001357895)	-82.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr5-41187476-3	chr5	41186975	41187975	+	846.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	520216.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	0.0	10.5	7.0	1.5	3.0	6.0
Merged-chr4-136469092-3	chr4	136468597	136469597	+	846.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024452)	promoter-TSS (NM_024452)	-664.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	11.0	29.0	16.5	10.0	39.5	11.0
Merged-chr1-175691884-1	chr1	175691384	175692384	+	846.3333130000001	f0_balb.idr	intron (NM_010098, intron 1 of 3)	intron (NM_010098, intron 1 of 3)	748.0	NM_010098	13603.0	Mm.32744	NM_010098	ENSMUSG00000026525	Opn3	ERO|Ecpn	opsin 3	protein-coding	0.5	19.5	3.0	0.5	19.5	3.0
Merged-chr12-117469554-4	chr12	117468983	117469983	+	846.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-46996.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6471244-3	chr2	6470754	6471754	+	846.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	118518.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71618257-3	chr17	71617792	71618792	+	846.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175639, intron 1 of 17)	ID4_|SINE|ID	2077.0	NM_175639	72515.0	Mm.257762	NM_175639	ENSMUSG00000041057	Wdr43	2610318G08Rik|AU020887|AV024208|Wrd43|mKIAA0007	WD repeat domain 43	protein-coding	0.0	1.0	1.0	8.0	10.5	3.0
Merged-chr14-118820257-3	chr14	118819725	118820725	+	846.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160097, intron 1 of 3)	intron (NM_001160097, intron 1 of 3)	32354.0	NM_001160097	58187.0	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding	0.0	4.0	0.0	0.0	3.0	0.5
Merged-chr6-82777066-4	chr6	82776568	82777568	+	846.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2614.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0.0	3.5	0.0	0.0	3.5	0.5
Merged-chr10-4433615-3	chr10	4433182	4434182	+	846.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024261, intron 1 of 4)	intron (NM_024261, intron 1 of 4)	1077.0	NM_024261	73419.0	Mm.346733	NM_024261	ENSMUSG00000061759	Armt1	1700052N19Rik|AW320013|AW536799	acidic residue methyltransferase 1	protein-coding	12.5	5.0	21.0	9.5	29.5	9.5
Merged-chr11-79398571-3	chr11	79398065	79399065	+	846.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010897, intron 5 of 57)	Lx8|LINE|L1	58673.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	2.0	28.5	10.5	0.5	13.5	3.0
Merged-chr11-106032097-4	chr11	106031595	106032595	+	846.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037712, intron 12 of 12)	IAPEz-int|LTR|ERVK	-4777.0	NM_027946	71833.0	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127614699-4	chr7	127614171	127615171	+	846.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177226)	promoter-TSS (NM_177226)	196.0	NR_155452	320683.0	Mm.156718	NM_177226	ENSMUSG00000045639	Zfp629	9330199A09Rik|Znf629	zinc finger protein 629	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-97914097-4	chr5	97913600	97914600	+	846.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133738, intron 16 of 16)	intron (NM_133738, intron 16 of 16)	116862.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	2.0	0.0	3.5	0.0	3.5	4.0
Merged-chr10-127530966-2	chr10	127530466	127531466	+	846.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_183297, intron 1 of 1)	intron (NM_183297, intron 1 of 1)	3593.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25522668-4	chr9	25522146	25523146	+	846.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	MIR|SINE|MIR	41049.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167953147-4	chr2	167952632	167953632	+	846.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	20805.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108834480-4	chr6	108833979	108834979	+	846.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138677, intron 1 of 11)	intron (NM_138677, intron 1 of 11)	5838.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	19.0	10.5	20.5	12.0	14.0	15.5
Merged-chr18-20887068-3	chr18	20886590	20887590	+	846.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177038, intron 1 of 28)	RSINE1|SINE|B4	8988.0	NM_029491	75964.0	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-89874737-3	chr9	89874261	89875261	+	846.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B1|LTR|ERVL	-35014.0	NM_001357744	19417.0	Mm.44561	NM_011245	ENSMUSG00000032356	Rasgrf1	AI844718|CDC25|CDC25Mm|Gnrp|Grf1|Grfbeta|P190-A|Ras-GRF1|p190|p190RhoGEF	RAS protein-specific guanine nucleotide-releasing factor 1	protein-coding	2.0	0.0	0.0	1.5	1.5	0.0
Merged-chr16-64884670-3	chr16	64884158	64885158	+	846.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	32657.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88235241-3	chr1	88234741	88235741	+	846.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001281466, exon 10 of 42)	exon (NM_001281466, exon 10 of 42)	8221.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-101846294-3	chr3	101845795	101846795	+	846.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10072.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	5.5	7.5	5.5	5.5	7.5	5.5
Merged-chr7-118104900-4	chr7	118104409	118105409	+	846.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_170669, exon 5 of 5)	3' UTR (NM_170669, exon 5 of 5)	11238.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	3.0	2.0	9.0	14.0	5.0	7.0
Merged-chr15-6369364-6	chr15	6368832	6369832	+	846.194458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	-17416.0	NM_023118	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-89212419-3	chr4	89211923	89212923	+	846.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	69769.0	NM_001040654	12578.0	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin dependent kinase inhibitor 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59969361-3	chr2	59968874	59969874	+	846.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001001182, exon 7 of 36)	exon (NM_001001182, exon 7 of 36)	-86768.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76596499-3	chr12	76595978	76596978	+	846.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013675, intron 32 of 35)	intron (NM_013675, intron 32 of 35)	-48553.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129875597-2	chr4	129875097	129876097	+	846.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30629.0	NR_045190	319894.0	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	5.0	7.0	6.5	16.5	3.0	5.0
Merged-chr2-6534649-2	chr2	6534192	6535192	+	846.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	181956.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16033491-2	chr19	16032989	16033989	+	846.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	48414.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	47.5	105.0	53.0	24.5	70.5	30.0
Merged-chr13-102669089-3	chr13	102668580	102669580	+	846.166626	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24467.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73037110-4	chr17	73036590	73037590	+	846.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70895.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62210813-4	chr15	62210305	62211305	+	846.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 3 of 6)	intron (NR_132746, intron 3 of 6)	8646.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.5	3.5	2.5	0.5	3.5	2.5
Merged-chr6-136847990-4	chr6	136847503	136848503	+	846.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026639)	TTS (NM_026639)	9597.0	NM_026639	109978.0	Mm.31840	NM_026639	ENSMUSG00000030217	Art4	4432404K01Rik|ARTC4|DO|DOK1	ADP-ribosyltransferase 4	protein-coding	5.5	1.5	2.5	0.0	0.0	6.5
Merged-chr19-47263811-3	chr19	47263326	47264326	+	846.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164717, exon 14 of 14)	3' UTR (NM_001164717, exon 14 of 14)	9763.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	0.0	14.5	19.0	2.0	4.5	2.5
Merged-chr7-67426298-3	chr7	67425797	67426797	+	846.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53439.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	22.5	22.0	20.5	4.0	43.5	30.0
Merged-chr16-18235615-3	chr16	18235101	18236101	+	846.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172151)	promoter-TSS (NM_172151)	-465.0	NM_172151	27801.0	Mm.326263	NM_172151	ENSMUSG00000060166	Zdhhc8	D16H22S1738E|DHHC-8|E330009O14Rik|Op53c05|ZDHHCL1	zinc finger, DHHC domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152580615-3	chr1	152580118	152581118	+	846.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	ORR1F|LTR|ERVL-MaLR	44599.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-97630739-3	chr1	97630238	97631238	+	846.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30938.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94917372-4	chr10	94916862	94917862	+	846.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 2 of 30)	intron (NM_018797, intron 2 of 30)	27216.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124480471-4	chr6	124479971	124480971	+	846.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-12642.0	NM_181344	232371.0	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120469957-4	chr2	120469463	120470463	+	846.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040608)	promoter-TSS (NR_040608)	-596.0	NR_040608	70933.0	Mm.444742	NR_040608		4931402G19Rik	-	RIKEN cDNA 4931402G19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22226554-4	chr9	22226079	22227079	+	846.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028420, intron 1 of 4)	B2_Mm2|SINE|B2	867.0	NM_001164624	235047.0	Mm.290849	NM_172763	ENSMUSG00000057982	Zfp809	BB114266|C330026E23	zinc finger protein 809	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139505298-4	chr5	139504824	139505824	+	846.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18427.0	NR_040701	74973.0	Mm.141282	NR_040701	ENSMUSG00000106056	4930500L23Rik	-	RIKEN cDNA 4930500L23 gene	ncRNA	9.5	12.0	3.0	2.0	4.5	2.0
Merged-chr17-29514605-4	chr17	29514092	29515092	+	846.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23547.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	1.0	1.0	0.0	0.5	0.5	0.0
Merged-chr10-43994756-4	chr10	43994271	43995271	+	846.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172393, intron 2 of 19)	intron (NM_172393, intron 2 of 19)	10075.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32135212-4	chr12	32134706	32135706	+	846.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73132.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	15.0	9.0	15.0	18.0	22.0	12.0
Merged-chr14-31375475-2	chr14	31374975	31375975	+	846.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 7 of 7)	intron (NM_001347585, intron 7 of 7)	38837.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113751907-3	chr6	113751405	113752405	+	846.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001036684, intron 19 of 19)	intron (NM_001036684, intron 19 of 19)	-11224.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-80240105-3	chr8	80239610	80240610	+	846.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-182102.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-40938584-1	chr13	40938084	40939084	+	846.0	f0_balb.idr	intron (NM_133219, intron 1 of 2)	intron (NM_133219, intron 1 of 2)	20950.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90699148-2	chr5	90698648	90699648	+	846.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58621.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79253935-2	chr2	79253435	79254435	+	846.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1491.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102682355-1	chr2	102681855	102682855	+	846.0	f0_c57.idr	intron (NM_001077514, intron 1 of 10)	intron (NM_001077514, intron 1 of 10)	23666.0	NM_001361018	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	5.0	2.0	6.0	2.5	4.0	1.5
Merged-chr5-130080107-2	chr5	130079607	130080607	+	846.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130476, intron 1 of 5)	B1F1|SINE|Alu	737.0	NM_001130476	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5627441-2	chr17	5626941	5627941	+	846.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	MLT1A0|LTR|ERVL-MaLR	134841.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74749392-2	chr15	74748892	74749892	+	846.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011838, exon 4 of 4)	3' UTR (NM_011838, exon 4 of 4)	-2705.0	NM_001081961	69462.0	Mm.64338	NM_001081961	ENSMUSG00000075605	Slurp2	2300005B03Rik|SLURP-2	secreted Ly6/Plaur domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-68734548-1	chr8	68734048	68735048	+	846.0	f1_balb.idr	intron (NM_001252623, intron 1 of 10)	intron (NM_001252623, intron 1 of 10)	598.0	NM_001252623	234356.0	Mm.334569	NM_172753	ENSMUSG00000036356	Csgalnact1	4732435N03Rik|CSGalNAcT-1	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding	2.0	0.0	0.5	2.5	1.0	4.0
Merged-chr9-56150958-2	chr9	56150458	56151458	+	846.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019793, intron 1 of 6)	MYSERV16_I-int|LTR|ERVK	10112.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38211056-3	chr18	38210696	38211696	+	846.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1434.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32689991-2	chr19	32689491	32690491	+	846.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026487, intron 6 of 9)	intron (NM_026487, intron 6 of 9)	22307.0	NM_026487	67979.0	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-69480597-2	chr9	69480097	69481097	+	846.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007585, intron 5 of 12)	intron (NM_007585, intron 5 of 12)	23653.0	NR_037296	100526560.0		NR_037296	ENSMUSG00000093042	Mir3109	mir-3109|mmu-mir-3109	microRNA 3109	ncRNA	2.0	0.0	0.0	2.0	0.0	0.0
Merged-chr18-67389864-3	chr18	67389424	67390424	+	846.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026473)	promoter-TSS (NM_026473)	-807.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	38.5	57.5	59.5	29.5	90.0	55.5
Merged-chr6-116227335-2	chr6	116226835	116227835	+	846.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026585, intron 14 of 30)	intron (NM_026585, intron 14 of 30)	19302.0	NM_026585	28006.0	Mm.28524	NM_026585	ENSMUSG00000024104	Washc2	A130095H06|C530005J20Rik|D6Wsu116e|Fam21	WASH complex subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40637352-2	chr19	40636852	40637852	+	846.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	-22418.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	53.5	86.5	78.5	73.5	114.0	85.5
Merged-chr7-80391640-1	chr7	80391140	80392140	+	846.0	f1_balb.idr	intron (NM_011046, intron 14 of 15)	intron (NM_011046, intron 14 of 15)	-3694.0	NM_010194	14159.0	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	7.0	4.5	11.0	8.5	2.0	11.0
Merged-chr15-88860974-2	chr15	88860474	88861474	+	846.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1220.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-192761652-1	chr1	192761152	192762152	+	846.0	f1_c57bl6.idr	intron (NM_144881, intron 1 of 11)	Lx5b|LINE|L1	9567.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	0.0	0.0	9.0	0.0	0.0	0.5
Merged-chr19-21820413-4	chr19	21819941	21820941	+	846.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033759, intron 12 of 23)	intron (NM_001033759, intron 12 of 23)	42101.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-149471436-3	chr5	149470940	149471940	+	846.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310763)	TTS (NM_001310763)	31780.0	NM_001310765	75860.0	Mm.159605	NM_029464	ENSMUSG00000029660	Tex26	4930588N13Rik	testis expressed 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133008034-2	chr4	133007534	133008534	+	846.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3472.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9642108-1	chr13	9641608	9642608	+	846.0	f0_balb.idr	intron (NM_001081426, intron 31 of 36)	intron (NM_001081426, intron 31 of 36)	121702.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-78162316-2	chr13	78161816	78162816	+	846.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163420, intron 8 of 8)	intron (NM_001163420, intron 8 of 8)	34133.0	NM_001347538	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-62884401-3	chr17	62883883	62884883	+	846.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3066.0	NM_010109	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71345055-2	chr8	71344555	71345555	+	846.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 19 of 39)	B4A|SINE|B4	-21793.0	NM_001145780	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr17-23560031-1	chr17	23559531	23560531	+	846.0	f1_c57bl6.idr	exon (NM_001033496, exon 3 of 6)	exon (NM_001033496, exon 3 of 6)	4195.0	NM_001033496	449521.0	Mm.268582	NM_001033496	ENSMUSG00000071256	Zfp213	BC038178|D17Ertd197e	zinc finger protein 213	protein-coding	1.5	0.0	0.0	2.0	0.0	0.0
Merged-chr7-28983181-2	chr7	28982681	28983681	+	846.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355054, intron 2 of 31)	intron (NM_001355054, intron 2 of 31)	327.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-36215300-1	chr12	36214800	36215800	+	846.0	f0_balb.idr	intron (NM_001361098, intron 5 of 8)	intron (NM_001361098, intron 5 of 8)	2918.0	NM_027699	71156.0	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	0.0	0.0	4.5	0.0	0.0	0.0
Merged-chr8-53681059-2	chr8	53680559	53681559	+	846.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41994.0	NM_146208	234258.0	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46341871-3	chr17	46341378	46342378	+	846.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12E|LTR|ERVK	-13855.0	NM_170680	224814.0	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167803623-2	chr2	167803123	167804123	+	846.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112446.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119037696-2	chr11	119037196	119038196	+	846.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013926)	TTS (NM_013926)	3217.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117117504-3	chr11	117116991	117117991	+	846.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 2 of 16)	intron (NM_001166507, intron 2 of 16)	2319.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4237206-1	chr7	4236706	4237706	+	846.0	f1_balb.idr	promoter-TSS (NM_001081239)	promoter-TSS (NM_001081239)	-548.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	26.0	76.0	40.5	14.0	68.0	58.5
Merged-chr5-103628688-3	chr5	103628179	103629179	+	846.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029415, intron 1 of 5)	intron (NM_029415, intron 1 of 5)	724.0	NM_029415	75750.0	Mm.7446	NM_029415	ENSMUSG00000029321	Slc10a6	8430417G17Rik|C78479|Soat	solute carrier family 10 (sodium/bile acid cotransporter family), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74303171-4	chr1	74302695	74303695	+	845.9895630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027154, intron 1 of 11)	intron (NM_027154, intron 1 of 11)	1141.0	NM_027154	69660.0	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112001312-3	chr13	112000781	112001781	+	845.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	133345.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	4.5	4.0	1.0	0.0	6.0	6.0
Merged-chr14-120362715-4	chr14	120362215	120363215	+	845.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	56263.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17759145-3	chr16	17758657	17759657	+	845.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145479)	promoter-TSS (NM_145479)	-464.0	NM_145479	224023.0	Mm.282807	NM_145479	ENSMUSG00000022750	Klhl22	2610318I18Rik|Kelchl	kelch-like 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-30010853-3	chr19	30010389	30011389	+	845.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4c|LINE|L1	7099.0	NM_025741	66745.0	Mm.158128	NM_025741	ENSMUSG00000024815	Trpd52l3	4931412G03Rik	tumor protein D52-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-56369353-4	chr10	56368788	56369788	+	845.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8012.0	NM_010288	14609.0	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95390756-4	chr4	95390263	95391263	+	845.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-166744.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-37062458-4	chr8	37061957	37062957	+	845.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38219.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	0.5	6.0	8.5	2.0	0.0	1.5
Merged-chr6-47175810-4	chr6	47175307	47176307	+	845.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004357, intron 20 of 23)	intron (NM_001004357, intron 20 of 23)	-68589.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	3.0	1.5	9.0	4.0	1.5	10.0
Merged-chr10-81312578-2	chr10	81312078	81313078	+	845.875	f1_balb.idr|f1_c57bl6.idr	exon (NM_008844, exon 11 of 18)	exon (NM_008844, exon 11 of 18)	-8525.0	NM_027381	70312.0	Mm.87628	NM_027381	ENSMUSG00000034889	Cactin	2510012J08Rik	cactin, spliceosome C complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-31944031-4	chr12	31943525	31944525	+	845.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177993, intron 1 of 8)	intron (NM_177993, intron 1 of 8)	6220.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	0.0	12.0	9.5	11.0	4.5	4.0
Merged-chr2-30096070-2	chr2	30095570	30096570	+	845.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2435.0	NM_001037762	66220.0	Mm.22538	NM_025428	ENSMUSG00000015335	Zdhhc12	1190004A01Rik	zinc finger, DHHC domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129587548-2	chr2	129587048	129588048	+	845.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5291.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.5	2.5	0.0	2.5	6.0	2.5
Merged-chr2-28466393-3	chr2	28465917	28466917	+	845.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027040)	promoter-TSS (NM_027040)	-93.0	NM_027040	69327.0	Mm.46470	NM_027040	ENSMUSG00000026831	1700007K13Rik	Rbest47	RIKEN cDNA 1700007K13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110343000-2	chr5	110342500	110343500	+	845.8333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153400)	promoter-TSS (NM_153400)	35.0	NM_153400	231602.0	Mm.55948	NM_153400	ENSMUSG00000029503	P2rx2	P2X2a|P2x2	purinergic receptor P2X, ligand-gated ion channel, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-98997906-4	chr6	98997412	98998412	+	845.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 8 of 17)	intron (NM_001197321, intron 8 of 17)	30386.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20531893-3	chr10	20531371	20532371	+	845.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 2 of 12)	intron (NM_013875, intron 2 of 12)	16457.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46259457-2	chr17	46258957	46259957	+	845.8333130000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_001252473, exon 10 of 10)	exon (NM_001252473, exon 10 of 10)	5292.0	NM_001111142	224813.0	Mm.70999	NM_001111142	ENSMUSG00000071073	Lrrc73	Gm88	leucine rich repeat containing 73	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34445789-4	chr19	34445214	34446214	+	845.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29421.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83736171-4	chr8	83735696	83736696	+	845.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 1 of 19)	RLTR11A2|LTR|ERVK	5115.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	55.0	78.0	53.5	23.0	29.5	20.0
Merged-chr17-34150238-3	chr17	34149737	34150737	+	845.8110960000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010388, intron 3 of 5)	intron (NM_010388, intron 3 of 5)	-2954.0	NM_010387	14999.0	Mm.460938	NM_010387	ENSMUSG00000079547	H2-DMb1	AI385589|H-2Mb1|H2-Mb1	histocompatibility 2, class II, locus Mb1	protein-coding	1.0	11.5	0.0	12.0	4.5	8.5
Merged-chr6-83005700-3	chr6	83005168	83006168	+	845.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_033079, exon 6 of 10)	exon (NM_033079, exon 6 of 10)	27803.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	19.0	79.5	64.0	27.5	56.5	59.0
Merged-chr7-16507462-3	chr7	16506963	16507963	+	845.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172739, intron 5 of 6)	intron (NM_172739, intron 5 of 6)	-30683.0	NM_008718	18142.0	Mm.145821	NM_008718	ENSMUSG00000001988	Npas1	MOP5|bHLHe11	neuronal PAS domain protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163583974-3	chr2	163583484	163584484	+	845.755554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18330.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118154049-2	chr11	118153549	118154549	+	845.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24830.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154552676-4	chr2	154552155	154553155	+	845.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001171640, exon 1 of 1)	exon (NM_001171640, exon 1 of 1)	879.0	NM_001171640	70362.0	Mm.479620	NM_001171640	ENSMUSG00000078129	Actl10	1700007I08Rik	actin-like 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85893652-2	chr1	85893152	85894152	+	845.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022417)	promoter-TSS (NM_022417)	-858.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55586534-2	chr14	55586034	55587034	+	845.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011190)	TTS (NM_011190)	-1280.0	NM_033146	85308.0	Mm.40667	NM_033146	ENSMUSG00000022217	Emc9	1500005A01Rik|Cgi112|Fam158a	ER membrane protein complex subunit 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74452911-2	chr1	74452411	74453411	+	845.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_176972, intron 20 of 25)	intron (NM_176972, intron 20 of 25)	43527.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-14351734-2	chr16	14351234	14352234	+	845.7333369999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-9824.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	10.0	73.0	30.0	10.0	17.5	23.0
Merged-chr3-94902940-4	chr3	94902443	94903443	+	845.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15985.0	NM_008945	19172.0	Mm.368	NM_008945	ENSMUSG00000005779	Psmb4	Pros-27	proteasome (prosome, macropain) subunit, beta type 4	protein-coding	2.5	3.0	0.5	0.0	0.0	0.0
Merged-chr16-91764201-3	chr16	91763708	91764708	+	845.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	34837.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120891265-4	chr5	120890764	120891764	+	845.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3651.0	NR_126529	23960.0	Mm.389688	NM_011852	ENSMUSG00000066861	Oas1g	AI449562|L2|Mmu-L|Mmu-L2|Oas1b|Oias-1|Oias1	2'-5' oligoadenylate synthetase 1G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67457757-4	chr18	67457226	67458226	+	845.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7123.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	0.5	1.5	0.5	0.5	1.5	0.5
Merged-chr9-90380259-3	chr9	90379751	90380751	+	845.694458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-109482.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152763565-4	chr2	152763142	152764142	+	845.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053091, intron 4 of 4)	B1_Mm|SINE|Alu	9469.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118535065-3	chr11	118534625	118535625	+	845.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285436, intron 3 of 13)	intron (NM_001285436, intron 3 of 13)	58293.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110105047-2	chr5	110104547	110105547	+	845.6666869999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_145147, exon 7 of 10)	exon (NM_145147, exon 7 of 10)	3150.0	NM_145147	107999.0	Mm.86267	NM_145147	ENSMUSG00000033434	Gtpbp6	AV119224|Pgbpll|pgpl	GTP binding protein 6 (putative)	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr7-7133091-3	chr7	7132651	7133651	+	845.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029584, exon 4 of 4)	exon (NM_029584, exon 4 of 4)	3604.0	NM_029584	76373.0	Mm.159732	NM_029584	ENSMUSG00000063535	Zfp773	2810409K11Rik	zinc finger protein 773	protein-coding	0.0	0.0	1.0	0.0	3.5	1.0
Merged-chr14-13971875-3	chr14	13971419	13972419	+	845.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10067.0	NM_001359901	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	1.0	2.0	17.0	0.0	20.5	6.5
Merged-chr2-79214088-3	chr2	79213584	79214584	+	845.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41342.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-33076334-3	chr13	33075824	33076824	+	845.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-7779.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	23.0	94.5	65.0	23.5	54.5	30.5
Merged-chr7-73648266-3	chr7	73647803	73648803	+	845.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	38260.0	NR_033604	244061.0	Mm.484605	NR_033604	ENSMUSG00000108337	Gm4971	EG244061	Smad nuclear interacting protein 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145305782-3	chr6	145305282	145306282	+	845.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	55230.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	101.5	238.5	160.0	63.0	243.5	135.0
Merged-chr16-31080756-3	chr16	31080261	31081261	+	845.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 1 of 3)	CpG	671.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	2.5	1.5	11.0	0.0	10.0	3.5
Merged-chr10-19061386-2	chr10	19060886	19061886	+	845.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45976.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	30.0	100.0	64.5	17.5	29.0	23.0
Merged-chr16-23550572-2	chr16	23550072	23551072	+	845.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29757.0	NM_001359083	17174.0	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134919530-2	chr6	134919031	134920031	+	845.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009875)	promoter-TSS (NM_009875)	-870.0	NM_009875	12576.0	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	37.5	130.5	76.0	43.0	127.5	89.0
Merged-chr16-10769872-2	chr16	10769372	10770372	+	845.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15664.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34055223-2	chr11	34054723	34055723	+	845.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 3 of 20)	RMER17B|LTR|ERVK	8295.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153431915-4	chr1	153431409	153432409	+	845.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033162, intron 2 of 9)	ORR1D2|LTR|ERVL-MaLR	6700.0	NM_001033162	71836.0	Mm.49460	NM_001033162	ENSMUSG00000042708	Shcbp1l	1700012A16Rik	Shc SH2-domain binding protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-143738897-4	chr1	143738365	143739365	+	845.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023505)	promoter-TSS (NM_023505)	-484.0	NM_001038593	69367.0	Mm.272727	NM_023505	ENSMUSG00000018196	Glrx2	1700010P22Rik|AI645710|Grx2	glutaredoxin 2 (thioltransferase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73389288-4	chr14	73388785	73389785	+	845.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3996.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51636617-3	chr11	51636177	51637177	+	845.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025346)	promoter-TSS (NM_025346)	-781.0	NM_025346	66089.0	Mm.288183	NM_025346	ENSMUSG00000001054	Rmnd5b	0610039K22Rik|Gid2	required for meiotic nuclear division 5 homolog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-75910474-3	chr3	75909981	75910981	+	845.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291069, intron 2 of 15)	intron (NM_001291069, intron 2 of 15)	46468.0	NM_175193	73124.0	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-176833386-3	chr1	176832898	176833898	+	845.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 5 of 18)	MIRb|SINE|MIR	2735.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	32.0	81.0	37.5	32.5	57.5	32.5
Merged-chr5-120088769-3	chr5	120088280	120089280	+	845.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27733.0	NM_028762	74111.0	Mm.41022	NM_028762	ENSMUSG00000029594	Rbm19	1200009A02Rik|AV302714|NPO	RNA binding motif protein 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-92680239-4	chr13	92679740	92680740	+	845.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172588, intron 2 of 11)	intron (NM_172588, intron 2 of 11)	69102.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25614125-4	chr14	25613578	25614578	+	845.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 6 of 23)	PB1D7|SINE|Alu	10565.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74868522-6	chr17	74868105	74869105	+	845.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-136924.0	NM_019919	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	0.0	3.5	3.5	2.0	0.5	5.5
Merged-chr5-112973793-4	chr5	112973297	112974297	+	845.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 2 of 20)	intron (NM_001285806, intron 2 of 20)	41741.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	0.0	4.5	1.5	0.0	6.0	0.5
Merged-chr2-29827812-4	chr2	29827307	29828307	+	845.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026615, intron 1 of 4)	intron (NM_026615, intron 1 of 4)	418.0	NM_026615	68205.0	Mm.20273	NM_026615	ENSMUSG00000069020	Urm1	2900073H19Rik	ubiquitin related modifier 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102808441-4	chr4	102807942	102808942	+	845.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144906, intron 1 of 23)	MTD|LTR|ERVL-MaLR	48307.0	NM_001285859	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	0.5	4.0	1.5	4.5	1.0	0.0
Merged-chr2-103656151-4	chr2	103655648	103656648	+	845.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	89838.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	0.0	8.0	5.5	6.0	16.5	7.0
Merged-chr6-129058215-4	chr6	129057700	129058700	+	845.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153094)	TTS (NM_153094)	12299.0	NM_153094	232408.0	Mm.259262	NM_153094	ENSMUSG00000030154	Klrb1f	A630024B12Rik|Nkr-p1f|Nkrp1-f|Nkrp1f	killer cell lectin-like receptor subfamily B member 1F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49983077-4	chr11	49982595	49983595	+	845.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4b|LINE|L1	-42236.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29389319-3	chr17	29388818	29389818	+	845.577759	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28404.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	1.0	2.5	0.5	0.0	0.0	0.5
Merged-chr2-73459371-3	chr2	73458865	73459865	+	845.577759	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-5476.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-82696814-7	chr10	82696356	82697356	+	845.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2151.0	NM_001081218	67933.0	Mm.127405	NM_026462	ENSMUSG00000020246	Hcfc2	1700129L13Rik|AU019838|fkls	host cell factor C2	protein-coding	3.0	3.0	2.0	0.0	1.5	0.5
Merged-chr2-160887500-4	chr2	160887012	160888012	+	845.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199118)	promoter-TSS (NM_001199118)	-656.0	NM_001199118	64899.0	Mm.292111	NM_022883	ENSMUSG00000027412	Lpin3	9130206L11Rik|AA438110|AV236139|mKIAA4023	lipin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98414255-3	chr11	98413754	98414754	+	845.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003817, intron 1 of 26)	intron (NM_001003817, intron 1 of 26)	1770.0	NM_001003817	13866.0	Mm.290822	NM_001003817	ENSMUSG00000062312	Erbb2	Erbb-2|HER-2|HER2|Neu|c-erbB2|c-neu|l11Jus8|mKIAA3023	erb-b2 receptor tyrosine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-61137041-3	chr2	61136534	61137534	+	845.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-161883.0	NR_045335	100038493.0	Mm.388076	NR_045335	ENSMUSG00000075325	Gm13582	-	predicted gene 13582	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170863243-3	chr1	170862757	170863757	+	845.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 1 of 15)	L2|LINE|L2	4514.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-93816277-3	chr13	93815790	93816790	+	845.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009712, intron 4 of 7)	intron (NM_009712, intron 4 of 7)	25513.0	NR_049198	100885837.0		NR_049198	ENSMUSG00000093480	Mir5624	Gm25075|mir-5624|mmu-mir-5624	microRNA 5624	ncRNA	3.5	22.5	8.5	0.0	3.0	1.5
Merged-chr4-136163678-4	chr4	136163188	136164188	+	845.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8586.0	NM_177733	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0.0	8.0	0.0	0.0	6.5	0.0
Merged-chr4-124752601-3	chr4	124752085	124753085	+	845.511108	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008385, intron 7 of 23)	intron (NM_008385, intron 7 of 23)	-1231.0	NR_151694	102634646.0	Mm.348378	NR_151694		Gm12915	-	predicted gene 12915	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-57519370-5	chr11	57518796	57519796	+	845.5047609999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168668)	promoter-TSS (NM_001168668)	631.0	NM_145426	216760.0	Mm.30501	NM_145426	ENSMUSG00000020522	Mfap3	2610509F16Rik|2700079M14Rik|AW536327	microfibrillar-associated protein 3	protein-coding	34.0	70.5	54.0	27.0	94.5	53.0
Merged-chr11-94786808-2	chr11	94786308	94787308	+	845.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4105.0	NM_001163172	544806.0	Mm.379774	NM_001034896	ENSMUSG00000075610	Tmem92	AU016430|Tmem92-ps	transmembrane protein 92	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60712699-2	chr13	60712204	60713204	+	845.5	f0_balb.idr|f1_balb.idr	intron (NM_134062, intron 3 of 26)	MER58A|DNA|hAT-Charlie	73660.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	13.5	53.5	17.0	14.5	30.0	22.0
Merged-chr11-60027433-2	chr11	60026933	60027933	+	845.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290011, intron 2 of 6)	C-rich|Low_complexity|Low_complexity	9572.0	NM_008819	18618.0	Mm.2731	NM_008819	ENSMUSG00000000301	Pemt	PEAMT|PEMT2|PLMT|Pempt|Pempt2	phosphatidylethanolamine N-methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5748837-2	chr17	5748337	5749337	+	845.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 8 of 8)	intron (NM_146073, intron 8 of 8)	-49820.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91085949-2	chr2	91085383	91086383	+	845.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10795.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	112.5	207.5	169.0	75.0	229.0	164.5
Merged-chr19-11081151-3	chr19	11080634	11081634	+	845.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022430)	promoter-TSS (NM_022430)	-31.0	NM_022430	64381.0	Mm.34460	NM_022430	ENSMUSG00000024730	Ms4a8a	2010004L09Rik|AI481240|CD20L5|Ms4a8	membrane-spanning 4-domains, subfamily A, member 8A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-111002210-2	chr4	111001710	111002710	+	845.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001284190, intron 4 of 12)	intron (NM_001284190, intron 4 of 12)	-412796.0	NR_033793	67621.0	Mm.45533	NM_026279	ENSMUSG00000028545	Bend5	2310026E23Rik	BEN domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-29850861-2	chr16	29850391	29851391	+	845.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	128233.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	0.0	4.0	4.0	0.0	4.0	0.0
Merged-chr14-8175259-2	chr14	8174759	8175759	+	845.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2267.0	NM_024221	68263.0	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117254036-2	chr8	117253536	117254536	+	845.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2983.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129182518-2	chr4	129182018	129183018	+	845.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029036, exon 3 of 7)	exon (NM_029036, exon 3 of 7)	7024.0	NM_029036	74648.0	Mm.172064	NM_029036	ENSMUSG00000040928	S100pbp	4930429A08Rik|AI851343|S100pbpr	S100P binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25789505-4	chr7	25788991	25789991	+	845.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190974)	promoter-TSS (NM_001190974)	-758.0	NM_001190975	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6272276-2	chr19	6271776	6272776	+	845.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4620.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-26611084-2	chr11	26610584	26611584	+	845.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-17164.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116514173-2	chr7	116513673	116514673	+	845.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360375, intron 3 of 14)	B2_Mm2|SINE|B2	9804.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-99263684-2	chr6	99263184	99264184	+	845.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053202, intron 2 of 18)	intron (NM_053202, intron 2 of 18)	2831.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86432590-2	chr1	86432090	86433090	+	845.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	6261.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5693998-2	chr19	5693500	5694500	+	845.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022012, intron 3 of 11)	L2c|LINE|L2	4869.0	NM_022012	26403.0	Mm.185026	NM_022012	ENSMUSG00000004054	Map3k11	2610017K16Rik|Mlk3|PTK1|SPRK	mitogen-activated protein kinase kinase kinase 11	protein-coding	1.5	0.5	11.0	7.5	12.0	5.5
Merged-chr2-164825940-2	chr2	164825440	164826440	+	845.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_028028, exon 2 of 2)	exon (NM_028028, exon 2 of 2)	2594.0	NM_029370	75642.0	Mm.159541	NM_029370	ENSMUSG00000017767	Spata25	1700020C07Rik|Tsg23	spermatogenesis associated 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28864927-2	chr7	28864427	28865427	+	845.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008496, intron 2 of 3)	intron (NM_008496, intron 2 of 3)	541.0	NM_008496	16858.0	Mm.20973	NM_008496	ENSMUSG00000053522	Lgals7	Galectin-7|Pig1	lectin, galactose binding, soluble 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-145757959-2	chr3	145757459	145758459	+	845.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026993)	promoter-TSS (NM_026993)	-733.0	NM_026993	69219.0	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80044201-2	chr11	80043701	80044701	+	845.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36790.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10432351-2	chr16	10431851	10432851	+	845.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013778, intron 1 of 6)	intron (NM_001013778, intron 1 of 6)	15011.0	NM_001359069	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134907330-3	chr5	134906840	134907840	+	845.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029681)	promoter-TSS (NM_029681)	-607.0	NM_194065	76629.0	Mm.159750	NM_029681	ENSMUSG00000040576	Tmem270	1700111I05Rik|Wbscr28	transmembrane protein 270	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-82765079-2	chr10	82764616	82765616	+	845.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010914)	promoter-TSS (NM_010914)	-975.0	NM_010914	18045.0	Mm.245998	NM_010914	ENSMUSG00000020248	Nfyb	AA985999|Cbf-A	nuclear transcription factor-Y beta	protein-coding	0.0	4.0	0.0	0.0	3.0	1.0
Merged-chr3-96213108-2	chr3	96212608	96213608	+	845.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-6808.0	NM_178213	621893.0		NM_178213	ENSMUSG00000063689	Hist2h2ab	EG621893|H2a-613a	histone cluster 2, H2ab	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115267335-2	chr11	115266919	115267919	+	845.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010350)	promoter-TSS (NM_010350)	-176.0	NM_010350	14813.0	Mm.39090	NM_010350	ENSMUSG00000020734	Grin2c	GluN2C|NMDAR2C|NR2C	glutamate receptor, ionotropic, NMDA2C (epsilon 3)	protein-coding	0.0	0.0	0.5	0.0	0.0	2.0
Merged-chr16-52093551-3	chr16	52093051	52094051	+	845.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	62002.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98831010-2	chr10	98830510	98831510	+	845.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83632.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161976110-2	chr1	161975585	161976585	+	845.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204904, intron 1 of 6)	ORR1F|LTR|ERVL-MaLR	3551.0	NM_001204904	75368.0	Mm.108728	NM_001204904	ENSMUSG00000086277	4930558K02Rik	-	RIKEN cDNA 4930558K02 gene	protein-coding	2.0	15.5	6.0	3.5	11.5	6.0
Merged-chr7-123312064-4	chr7	123311569	123312569	+	845.470825	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 8 of 19)	intron (NM_001316713, intron 8 of 19)	57846.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0.0	2.0	3.5	0.0	1.0	0.0
Merged-chr19-12465513-3	chr19	12465038	12466038	+	845.464294	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010821)	TTS (NM_010821)	4759.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	195.0	439.0	378.0	221.0	496.5	384.5
Merged-chr2-28402361-4	chr2	28401884	28402884	+	845.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45557.0	NM_001005420	241289.0	Mm.330095	NM_001005420	ENSMUSG00000035829	Ppp1r26	Gm347|Kiaa0649|mKIAA0649	protein phosphatase 1, regulatory subunit 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8925450-4	chr10	8924946	8925946	+	845.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39376.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-58506153-4	chr4	58505644	58506644	+	845.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010336, intron 1 of 3)	PB1D11|SINE|Alu	-6741.0	NM_001290486	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59201411-3	chr15	59200903	59201903	+	845.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-105545.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	7.5	3.5	12.5	5.0	7.5	4.0
Merged-chr4-53265540-3	chr4	53265039	53266039	+	845.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033140)	promoter-TSS (NR_033140)	-47.0	NR_033140	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115623012-3	chr5	115622488	115623488	+	845.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172719)	TTS (NM_172719)	8828.0	NR_027810	66123.0	Mm.133063	NM_021417	ENSMUSG00000107121	1110006O24Rik	-	RIKEN cDNA 1110006O24 gene	ncRNA	0.5	0.0	5.5	5.0	5.5	2.0
Merged-chr3-86976732-4	chr3	86976220	86977220	+	845.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9866.0	NM_001289449	12480.0	Mm.389465	NM_007640	ENSMUSG00000041750	Cd1d2	CD1.2|Cd1b|Ly-38	CD1d2 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122129350-2	chr5	122128850	122129850	+	845.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289811, intron 3 of 12)	intron (NM_001289811, intron 3 of 12)	5543.0	NM_001289811	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129499798-3	chr6	129499325	129500325	+	845.388916	f0_balb.idr|f1_balb.idr	intron (NM_138648, intron 3 of 7)	intron (NM_138648, intron 3 of 7)	7340.0	NM_138648	108078.0	Mm.293626	NM_138648	ENSMUSG00000030162	Olr1	LOX-1|SR-EI|Scare1	oxidized low density lipoprotein (lectin-like) receptor 1	protein-coding	3.0	15.0	11.0	10.0	22.0	25.0
Merged-chr10-127628746-3	chr10	127628249	127629249	+	845.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7601.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	2.0	0.0	0.5	0.5	2.0	6.5
Merged-chr14-34363872-4	chr14	34363357	34364357	+	845.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8464.0	NM_183278	69134.0	Mm.27156	NM_183278	ENSMUSG00000043681	Fam25c	2200001I15Rik|Fam25	family with sequence similarity 25, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15715400-4	chr17	15714912	15715912	+	845.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007690, intron 2 of 35)	B3|SINE|B2	10445.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	5.0	5.5	4.0	16.0	6.5	1.5
Merged-chr14-17954235-4	chr14	17953726	17954726	+	845.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 3 of 9)	intron (NM_001113417, intron 3 of 9)	-27418.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-29606842-3	chr16	29606327	29607327	+	845.3444820000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133752, intron 7 of 28)	intron (NM_133752, intron 7 of 28)	27493.0	NM_001199177	74143.0	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	8.0	2.0	12.0	15.0	20.0	26.5
Merged-chr9-10668802-4	chr9	10668288	10669288	+	845.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033359, intron 1 of 20)	intron (NM_001033359, intron 1 of 20)	235938.0	NM_001033359	244682.0	Mm.187021	NM_001033359	ENSMUSG00000039488	Cntn5	6720426O10Rik|A830025P08Rik|Gm507|NB-2	contactin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25479984-2	chr9	25479484	25480484	+	845.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1613.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58590794-2	chr13	58590294	58591294	+	845.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_022317, intron 1 of 17)	B3|SINE|B2	20083.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-123209709-2	chr10	123209199	123210199	+	845.333374	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-12680.0	NM_001301628	14479.0	Mm.244209	NM_027604	ENSMUSG00000020124	Usp15	4921514G19Rik|AI327321|E430033I05Rik|Gcap18	ubiquitin specific peptidase 15	protein-coding	1.0	10.0	0.5	7.5	0.0	1.0
Merged-chr16-44332529-3	chr16	44332123	44333123	+	845.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001159419, exon 1 of 26)	5' UTR (NM_001159419, exon 1 of 26)	215.0	NM_198034	320007.0	Mm.242144	NM_198034	ENSMUSG00000022696	Sidt1	AW045928|B830021E24Rik	SID1 transmembrane family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-147054741-3	chr1	147054236	147055236	+	845.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	557049.0	NM_001145807	215378.0	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148511889-3	chr5	148511392	148512392	+	845.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 4 of 6)	intron (NM_001359199, intron 4 of 6)	39781.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	1.5	0.0	0.0	0.0	1.0	0.0
Merged-chr6-29557302-4	chr6	29556785	29557785	+	845.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177296, intron 17 of 22)	A-rich|Low_complexity|Low_complexity	28003.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-89773986-4	chr16	89773488	89774488	+	845.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44364.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-148581128-2	chr6	148580628	148581628	+	845.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33181.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8691249-3	chr3	8690742	8691742	+	845.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24204.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151722433-2	chr1	151721933	151722933	+	845.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32294.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142222355-3	chr5	142221845	142222845	+	845.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-179152.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31130935-3	chr2	31130458	31131458	+	845.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 1 of 15)	intron (NM_001355105, intron 1 of 15)	11050.0	NM_001355106	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121483824-3	chr10	121483352	121484352	+	845.31665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7602.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11060572-4	chr19	11060063	11061063	+	845.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9997.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-41600471-4	chr8	41600057	41601057	+	845.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-183439.0	NM_013522	14300.0	Mm.217312	NM_013522	ENSMUSG00000031590	Frg1	-	FSHD region gene 1	protein-coding	1.5	6.0	11.5	18.5	9.5	38.5
Merged-chr9-85368551-4	chr9	85368052	85369052	+	845.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41402.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134053384-4	chr1	134052892	134053892	+	845.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16138.0	NM_021355	14264.0	Mm.287146	NM_021355	ENSMUSG00000041559	Fmod	AI131919|AU041740|FM|SLRR2E	fibromodulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95870202-3	chr13	95869695	95870695	+	845.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	21727.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	28.5	44.0	42.0	0.0	10.5	5.5
Merged-chr8-79450369-3	chr8	79449866	79450866	+	845.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50898.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-55244307-4	chr9	55243807	55244807	+	845.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	intron (NM_032002, intron 3 of 7)	35372.0	NM_028049	71999.0	Mm.276429	NM_028049	ENSMUSG00000032309	Fbxo22	0610033L19Rik|1600016C16Rik	F-box protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17579952-4	chr10	17579454	17580454	+	845.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143274.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3535970-2	chr11	3535470	3536470	+	845.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159284, intron 3 of 21)	CpG	3322.0	NM_013870	29856.0	Mm.188516	NM_013870	ENSMUSG00000020439	Smtn	smsmo	smoothelin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-70874597-4	chr6	70874083	70875083	+	845.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010121, intron 2 of 16)	intron (NM_010121, intron 2 of 16)	30068.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83137937-4	chr17	83137438	83138438	+	845.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59713.0	NR_045094	100503434.0	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-88632091-2	chr11	88631560	88632560	+	845.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_054043, intron 5 of 13)	intron (NM_054043, intron 5 of 13)	12809.0	NR_131025	68397.0	Mm.426889	NR_131025		0610039H22Rik	-	RIKEN cDNA 0610039H22 gene	ncRNA	3.5	16.0	6.0	25.0	18.0	15.0
Merged-chr9-96716097-3	chr9	96715629	96716629	+	845.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359959, intron 2 of 2)	intron (NM_001359959, intron 2 of 2)	3316.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46484750-4	chr19	46484253	46485253	+	845.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 11 of 11)	intron (NM_001025391, intron 11 of 11)	-16895.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43911988-4	chr1	43911470	43912470	+	845.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22024.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132631022-4	chr2	132630531	132631531	+	845.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033468, intron 4 of 5)	intron (NR_033468, intron 4 of 5)	32835.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114851784-4	chr11	114851334	114852334	+	845.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_147217)	promoter-TSS (NM_147217)	-196.0	NM_147217	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80455730-4	chr18	80455227	80456227	+	845.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 5 of 12)	intron (NM_026295, intron 5 of 12)	13940.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	0.0	8.0	2.0	4.5	2.0	5.5
Merged-chr7-35151869-2	chr7	35151369	35152369	+	845.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32576.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	9.0	8.5	6.0	6.5	5.0	17.0
Merged-chr8-27087460-3	chr8	27086956	27087956	+	845.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054044, intron 1 of 18)	intron (NM_054044, intron 1 of 18)	1615.0	NM_054044	78560.0	Mm.87046	NM_054044	ENSMUSG00000031486	Adgra2	8430414O08Rik|9530074E10Rik|Gpr124|Tem5|mKIAA1531	adhesion G protein-coupled receptor A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128243878-3	chr2	128243384	128244384	+	845.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	116309.0	NM_001284410	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0.0	0.0	11.0	2.0	1.0	8.5
Merged-chr5-64861135-3	chr5	64860651	64861651	+	845.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57628.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	1.0	0.0	0.0	1.0	0.0	0.0
Merged-chr7-46882197-3	chr7	46881700	46882700	+	845.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20937.0	NM_013580	16833.0	Mm.16563	NM_013580	ENSMUSG00000030851	Ldhc	LDH-C4|Ldh-3|Ldh-x|Ldh3|Ldhc4	lactate dehydrogenase C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51830834-2	chr13	51830334	51831334	+	845.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15841.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55448329-2	chr11	55447824	55448824	+	845.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 3 of 3)	L1Md_F2|LINE|L1	12884.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-60997653-2	chr9	60997153	60998153	+	845.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-19416.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114924358-2	chr11	114923858	114924858	+	845.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_199221, exon 4 of 4)	3' UTR (NM_199221, exon 4 of 4)	10028.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164770456-2	chr2	164769956	164770956	+	845.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026785, intron 2 of 5)	intron (NM_026785, intron 2 of 5)	527.0	NM_026785	68612.0	Mm.89830	NM_026785	ENSMUSG00000001403	Ube2c	1110015A16Rik|D2Ertd695e	ubiquitin-conjugating enzyme E2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7855578-2	chr9	7855078	7856078	+	845.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007464, intron 5 of 8)	intron (NM_007464, intron 5 of 8)	17592.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135185239-2	chr5	135184739	135185739	+	845.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-2084.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30972317-4	chr13	30971803	30972803	+	845.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025588, intron 1 of 27)	ORR1E|LTR|ERVL-MaLR	1744.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-76292853-3	chr5	76292341	76293341	+	845.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007715, intron 2 of 22)	L1_Mus2|LINE|L1	10661.0	NM_001305222	12753.0	Mm.3552	NM_007715	ENSMUSG00000029238	Clock	5330400M04Rik|KAT13D	circadian locomotor output cycles kaput	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-183917164-4	chr1	183916673	183917673	+	845.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116825.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	17.5	36.0	27.0	5.0	9.0	14.0
Merged-chr9-100434036-3	chr9	100433485	100434485	+	845.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	52488.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	4.0	1.0	5.5	4.5	3.5	6.0
Merged-chr11-97575885-4	chr11	97575386	97576386	+	845.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018873)	promoter-TSS (NM_018873)	-760.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	0.0	2.5	0.0	0.0	1.0	0.0
Merged-chr17-67246087-4	chr17	67245641	67246641	+	845.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	MER2|DNA|TcMar-Tigger	108318.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	39.5	71.0	61.5	7.0	18.5	17.0
Merged-chr4-110665249-2	chr4	110664749	110665749	+	845.0833130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001284190, intron 3 of 12)	L1_Mus2|LINE|L1	267551.0	NM_030231	78933.0	Mm.435620	NM_030231	ENSMUSG00000061298	Agbl4	4930578N11Rik|4931433A01Rik	ATP/GTP binding protein-like 4	protein-coding	0.5	2.0	0.5	3.5	3.0	0.5
Merged-chr16-94239810-4	chr16	94239317	94240317	+	845.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 5 of 10)	ORR1D2|LTR|ERVL-MaLR	50474.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55689739-4	chr14	55689262	55690262	+	845.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-7945.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119064575-4	chr9	119064110	119065110	+	845.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011700, intron 11 of 18)	intron (NM_011700, intron 11 of 18)	11832.0	NM_001164567	22351.0	Mm.83817	NM_011700	ENSMUSG00000038775	Vill	Villp	villin-like	protein-coding	3.5	19.0	12.5	7.0	5.5	5.5
Merged-chr2-174335877-4	chr2	174335388	174336388	+	845.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077507, intron 2 of 10)	intron (NM_001077507, intron 2 of 10)	5799.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	2.0	0.0	0.0	0.0	3.0	2.0
Merged-chr5-123013768-4	chr5	123013270	123014270	+	845.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1304.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-12059597-3	chr2	12059074	12060074	+	845.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-241672.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115427995-3	chr11	115427473	115428473	+	845.0277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183285, intron 4 of 5)	intron (NM_183285, intron 4 of 5)	7847.0	NM_183285	70382.0	Mm.276299	NM_183285	ENSMUSG00000016940	Kctd2	2310012I15Rik	potassium channel tetramerisation domain containing 2	protein-coding	0.0	0.0	0.5	4.0	3.0	0.0
Merged-chr17-22417673-4	chr17	22417079	22418079	+	845.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6623.0	NM_001331197	74149.0	Mm.30767	NM_198003	ENSMUSG00000071266	Zfp946	1300003B13Rik	zinc finger protein 946	protein-coding	1.0	0.0	1.0	6.5	0.0	0.0
Merged-chr4-139286392-1	chr4	139285892	139286892	+	845.0	f1_c57bl6.idr	intron (NM_001037761, intron 6 of 9)	intron (NM_001037761, intron 6 of 9)	24316.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	6.0	6.5	4.0	12.5	4.0	3.0
Merged-chr13-97146036-2	chr13	97145536	97146536	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271465, intron 4 of 20)	intron (NM_001271465, intron 4 of 20)	8099.0	NM_001271464	320806.0	Mm.219675	NM_177266	ENSMUSG00000021666	Gfm2	6530419G12Rik|A930009M04Rik|EF-G2mt|EFG2|MST027|RRF2mt	G elongation factor, mitochondrial 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94352255-2	chr11	94351755	94352755	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 26 of 30)	intron (NM_029600, intron 26 of 30)	24254.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30815863-2	chr5	30815363	30816363	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133350, intron 1 of 6)	intron (NM_133350, intron 1 of 6)	1222.0	NM_133350	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139200330-2	chr4	139199839	139200839	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	6228.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	34.0	94.0	67.0	36.5	101.5	62.0
Merged-chr5-24051940-2	chr5	24051443	24052443	+	845.0	f0_balb.idr|f1_balb.idr	Intergenic	RMER2|LTR|ERV1	-21253.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	0.0	13.5	11.0	10.5	40.0	27.5
Merged-chr2-165334636-2	chr2	165334136	165335136	+	845.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR51A_Mm|LTR|ERVK?	-8157.0	NM_207706	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-77790965-1	chr14	77790465	77791465	+	845.0	f0_balb.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	8003.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	9.0	3.0	5.0	0.0	9.5	0.0
Merged-chr17-31835550-2	chr17	31835050	31836050	+	845.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20254.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	0.0	1.5	4.0	0.0	0.0	0.0
Merged-chr1-135700814-4	chr1	135700359	135701359	+	845.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19204.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114067955-2	chr7	114067455	114068455	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	49826.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	0.0	7.5	3.5	1.0	6.5	2.0
Merged-chr5-30711800-4	chr5	30711297	30712297	+	845.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001356949, exon 1 of 3)	5' UTR (NM_001356949, exon 1 of 3)	233.0	NM_023047	65254.0	Mm.27732	NM_023047	ENSMUSG00000029168	Dpysl5	CRAM|CRMP-5|Crmp5	dihydropyrimidinase-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32741489-1	chr5	32740989	32741989	+	845.0	f1_balb.idr	intron (NM_001347332, intron 3 of 8)	intron (NM_001347332, intron 3 of 8)	4853.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31119855-2	chr6	31119355	31120355	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-56762.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29523857-2	chr19	29523357	29524357	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081319, intron 1 of 25)	intron (NM_001081319, intron 1 of 25)	1575.0	NM_001081319	226089.0	Mm.353838	NM_177641	ENSMUSG00000038658	Ric1	C030046E11Rik|C130057E09Rik|Kiaa1432	RAB6A GEF complex partner 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35130968-2	chr2	35130468	35131468	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_012018, intron 11 of 43)	B4A|SINE|B4	-1266.0	NM_001290635	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120035479-2	chr1	120034979	120035979	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001012322, intron 4 of 13)	intron (NM_001012322, intron 4 of 13)	28499.0	NM_001012322	319229.0	Mm.189223	NM_001012322	ENSMUSG00000026387	Sctr	6530402O03Rik	secretin receptor	protein-coding	0.0	1.5	2.0	2.5	0.5	1.0
Merged-chr16-49504005-4	chr16	49503504	49504504	+	845.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-195290.0	NM_028680	73916.0	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84135560-4	chr3	84135077	84136077	+	845.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029797, intron 3 of 7)	intron (NM_029797, intron 3 of 7)	20209.0	NM_029797	76915.0	Mm.274829	NM_029797	ENSMUSG00000033752	Mnd1	2610034E18Rik|AI591601|Gaj	meiotic nuclear divisions 1	protein-coding	2.5	1.0	0.5	2.0	0.5	1.5
Merged-chr1-74394299-2	chr1	74393799	74394799	+	845.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029743)	promoter-TSS (NR_029743)	-11.0	NR_029743	387219.0		NR_029743	ENSMUSG00000065468	Mir26b	Mirn26b|mir-26b|mmu-mir-26b	microRNA 26b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-23176740-2	chr10	23176236	23177236	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010167, intron 3 of 18)	intron (NM_010167, intron 3 of 18)	173154.0	NM_001347372	14051.0	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	3.0	6.5	10.5	1.5	2.5	7.0
Merged-chr11-64627664-3	chr11	64627162	64628162	+	845.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-190988.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	2.5	3.0	12.5	2.5	0.0	1.5
Merged-chr12-98703813-3	chr12	98703319	98704319	+	845.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146199, intron 8 of 18)	intron (NM_001146199, intron 8 of 18)	30826.0	NM_011877	24000.0	Mm.4420	NM_011877	ENSMUSG00000021009	Ptpn21	PTPD1|PTPRL10	protein tyrosine phosphatase, non-receptor type 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-59010844-2	chr12	59010344	59011344	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009147, intron 1 of 19)	(TG)n|Simple_repeat|Simple_repeat	1173.0	NM_009147	20334.0	Mm.491137	NM_009147	ENSMUSG00000020986	Sec23a	Msec23|Sec23r	SEC23 homolog A, COPII coat complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65216827-2	chr17	65216327	65217327	+	845.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	293230.0	NM_001360185	381107.0	Mm.141275	NM_001008973	ENSMUSG00000045036	Tmem232	E130009J12Rik|Gm940|Tes13-L|Tes13-S	transmembrane protein 232	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-15255850-2	chr9	15255350	15256350	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026955, intron 1 of 3)	RMER17B|LTR|ERVK	16805.0	NM_026955	69137.0	Mm.41396	NM_026955	ENSMUSG00000031937	Vstm5	2200002K05Rik	V-set and transmembrane domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40733567-2	chr19	40733033	40734033	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 7 of 9)	intron (NM_001304721, intron 7 of 9)	73763.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	6.0	7.0	4.5	4.0	16.0	3.5
Merged-chr9-44655310-3	chr9	44654839	44655839	+	845.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17894.0	NM_001277851	58866.0	Mm.45380	NM_021481	ENSMUSG00000032098	Treh	2210412M19Rik	trehalase (brush-border membrane glycoprotein)	protein-coding	3.0	4.5	14.0	1.5	5.5	10.0
Merged-chr7-28740346-2	chr7	28739846	28740846	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011885, intron 2 of 2)	B3A|SINE|B2	475.0	NM_001360254	24030.0	Mm.358650	NM_011885	ENSMUSG00000045948	Mrps12	AI327385|Rpms12|rps12	mitochondrial ribosomal protein S12	protein-coding	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr4-105696969-2	chr4	105696469	105697469	+	845.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	539622.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5022933-2	chr6	5022433	5023433	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	ORR1E|LTR|ERVL-MaLR	119613.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173378127-2	chr2	173377627	173378627	+	845.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101594.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29868073-2	chr6	29867573	29868573	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347084, intron 3 of 17)	intron (NM_001347084, intron 3 of 17)	8477.0	NM_001171001	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-177984488-2	chr1	177983988	177984988	+	845.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A1|LTR|ERVK	-6910.0	NR_155538	545391.0	Mm.442974	NM_001034899	ENSMUSG00000091476	Gm16432	EG545391|EG666250	predicted gene 16432	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83611923-2	chr8	83611433	83612433	+	845.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018808, exon 3 of 3)	3' UTR (NM_018808, exon 3 of 3)	3385.0	NM_001308227	81489.0	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	0.0	0.0	1.5	0.0	0.0	2.0
Merged-chr12-11336993-3	chr12	11336496	11337496	+	845.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012038, intron 2 of 3)	intron (NM_012038, intron 2 of 3)	37109.0	NR_106136	102465775.0		NR_106136	ENSMUSG00000098879	Mir7675	Gm27965|mmu-mir-7675	microRNA 7675	ncRNA	0.0	4.0	0.0	4.5	0.5	1.0
Merged-chr11-120511333-2	chr11	120510833	120511833	+	845.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-19394.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121419829-3	chr9	121419312	121420312	+	845.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357968, intron 1 of 14)	intron (NM_001357968, intron 1 of 14)	16366.0	NM_001357968	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	4.0	8.0	3.5	1.5	15.0	4.0
Merged-chr8-12711888-3	chr8	12711377	12712377	+	845.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033546, intron 3 of 3)	MTE2a|LTR|ERVL-MaLR	7250.0	NR_033546	100038554.0	Mm.367723	NR_033546	ENSMUSG00000074469	Gm15348	-	predicted gene 15348	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85111886-2	chr12	85111386	85112386	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030225, intron 2 of 14)	intron (NM_030225, intron 2 of 14)	1053.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-22035140-4	chr13	22034629	22035629	+	845.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175665)	promoter-TSS (NM_175665)	514.0	NM_175659	319168.0	Mm.250564	NM_175659	ENSMUSG00000069302	Hist1h2ah	-	histone cluster 1, H2ah	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8873499-2	chr10	8872999	8873999	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	B4A|SINE|B4	12571.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139969381-2	chr7	139968881	139969881	+	845.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	9374.0	NM_001347614	381933.0	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115003414-3	chr11	115002904	115003904	+	845.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-1524.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13429939-4	chr10	13429452	13430452	+	845.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	-40982.0	NM_001195066	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122556248-4	chr8	122555806	122556806	+	844.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4977.0	NM_001357349	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	25.0	52.5	40.5	17.0	20.0	37.0
Merged-chr14-122557545-4	chr14	122557082	122558082	+	844.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144844, intron 1 of 23)	intron (NM_144844, intron 1 of 23)	23254.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-22896009-3	chr5	22895512	22896512	+	844.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359998, intron 1 of 3)	intron (NM_001359998, intron 1 of 3)	-149128.0	NR_027362	330052.0	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	17.5	37.0	22.5	0.0	2.5	2.5
Merged-chr18-64929746-3	chr18	64929219	64930219	+	844.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	41963.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.0	2.0	0.0	0.0	0.0	0.0
Merged-chr18-24305447-4	chr18	24304935	24305935	+	844.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33931.0	NR_152129	328919.0	Mm.118671	NR_152129		Gm38410	9530053H22	predicted gene, 38410	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166732396-4	chr2	166731903	166732903	+	844.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18571.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59224633-4	chr11	59224115	59225115	+	844.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007476, intron 1 of 4)	intron (NM_007476, intron 1 of 4)	3547.0	NM_001130408	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	4.5	33.0	20.5	18.0	22.5	19.5
Merged-chr14-118437252-2	chr14	118436752	118437752	+	844.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	71374.0	NR_045624	73306.0	Mm.362328	NR_045624	ENSMUSG00000099911	1700044C05Rik	-	RIKEN cDNA 1700044C05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31685762-4	chr14	31685231	31686231	+	844.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER44B|DNA|TcMar-Tigger	44674.0	NM_025295	26363.0	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-117882263-6	chr6	117881701	117882701	+	844.89447	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER68|LTR|ERVL	-18139.0	NM_001166432	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147404698-3	chr4	147404209	147405209	+	844.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	RLTR11B|LTR|ERVK	-148568.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0.0	2.0	0.0	0.0	0.0	0.0
Merged-chr11-97799010-4	chr11	97798485	97799485	+	844.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010688)	promoter-TSS (NM_010688)	-580.0	NM_010688	16796.0	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	8.0	6.0	2.0	2.5	7.5	12.5
Merged-chr2-154594084-4	chr2	154593589	154594589	+	844.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021534, intron 2 of 3)	intron (NM_021534, intron 2 of 3)	9584.0	NM_021534	59038.0	Mm.24673	NM_021534	ENSMUSG00000000876	Pxmp4	3010018P03Rik|Pmp24	peroxisomal membrane protein 4	protein-coding	19.5	19.5	6.5	9.5	18.0	7.5
Merged-chr16-23991343-4	chr16	23990832	23991832	+	844.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2480.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-77037702-6	chr14	77037198	77038198	+	844.851868	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175369, intron 1 of 5)	intron (NM_175369, intron 1 of 5)	926.0	NM_001310649	108811.0	Mm.102168	NM_175369	ENSMUSG00000034795	Ccdc122	4933415L06Rik	coiled-coil domain containing 122	protein-coding	187.0	504.5	330.5	76.0	171.5	107.0
Merged-chr4-84952461-2	chr4	84951961	84952961	+	844.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175275, intron 3 of 25)	intron (NM_175275, intron 3 of 25)	68152.0	NM_177385	338349.0	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	7.0	10.5	5.5	5.5	22.0	5.0
Merged-chr15-103455184-3	chr15	103454695	103455695	+	844.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153505, intron 2 of 30)	intron (NM_153505, intron 2 of 30)	1370.0	NM_153505	105855.0	Mm.30805	NM_153505	ENSMUSG00000022488	Nckap1l	4930568P13Rik|AI463083|Hem1|Hemp1	NCK associated protein 1 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78135807-2	chr10	78135307	78136307	+	844.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20A|LTR|ERVK	33961.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60373335-3	chr18	60372807	60373807	+	844.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021792)	promoter-TSS (NM_021792)	-309.0	NM_021792	60440.0	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-64204965-3	chr3	64204465	64205465	+	844.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-67485.0	NM_001104592	100125586.0	Mm.469888	NM_001104592	ENSMUSG00000043897	Vmn2r2	-	vomeronasal 2, receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31211365-3	chr6	31210844	31211844	+	844.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	PB1D11|SINE|Alu	7130.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43055488-3	chr17	43054983	43055983	+	844.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 3 of 5)	B1_Mus2|SINE|Alu	38928.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	6.0	8.5	6.0	12.5	29.5	21.0
Merged-chr19-42147316-4	chr19	42146812	42147812	+	844.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183195)	promoter-TSS (NM_183195)	-77.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-6531378-3	chr18	6530887	6531887	+	844.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-15279.0	NM_007935	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	7.0	1.5	5.5	2.0	1.0	0.5
Merged-chr11-4973441-3	chr11	4972949	4973949	+	844.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243043, intron 1 of 22)	intron (NM_001243043, intron 1 of 22)	-13375.0	NM_001355659	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0.5	2.5	5.0	4.5	2.0	1.5
Merged-chr19-6950746-3	chr19	6950266	6951266	+	844.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007522, exon 3 of 4)	exon (NM_007522, exon 3 of 4)	8204.0	NM_001285453	12015.0	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45703477-3	chr17	45702973	45703973	+	844.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17124.0	NM_026732	68463.0	Mm.379158	NM_026732	ENSMUSG00000023939	Mrpl14	1110006I11Rik|AI846816|MRP-L32|Rpml32	mitochondrial ribosomal protein L14	protein-coding	26.0	15.5	15.0	9.0	0.0	0.0
Merged-chr12-72843723-4	chr12	72843224	72844224	+	844.770874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74041.0	NM_029444	75801.0	Mm.242892	NM_029444	ENSMUSG00000021098	4930447C04Rik	4921504I02Rik|A930035O15Rik|Six6OS|Six6as|Six6os1	RIKEN cDNA 4930447C04 gene	protein-coding	16.0	42.0	9.0	13.0	22.0	7.0
Merged-chr3-97231465-4	chr3	97230968	97231968	+	844.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4104.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-61989374-4	chr15	61988918	61989918	+	844.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010849, exon 3 of 3)	exon (NM_010849, exon 3 of 3)	4077.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108755846-2	chr12	108755346	108756346	+	844.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37465.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134082087-4	chr4	134081526	134082526	+	844.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001162970, exon 12 of 20)	exon (NM_001162970, exon 12 of 20)	13047.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	0.0	3.0	1.5	4.0	0.0	0.0
Merged-chr17-80288264-2	chr17	80287764	80288764	+	844.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_198942, intron 1 of 22)	intron (NM_198942, intron 1 of 22)	-1948.0	NM_194269	378462.0	Mm.45208	NM_194269	ENSMUSG00000045257	Morn2	Mopt	MORN repeat containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101641474-4	chr11	101640980	101641980	+	844.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	13531.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25860530-2	chr15	25860030	25861030	+	844.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 1 of 8)	intron (NM_001034851, intron 1 of 8)	17232.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45703283-2	chr7	45702783	45703783	+	844.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_009800, intron 6 of 8)	intron (NM_009800, intron 6 of 8)	-1964.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	0.0	0.0	1.5	0.0	0.0	1.5
Merged-chr6-22325834-4	chr6	22325307	22326307	+	844.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138587, intron 5 of 9)	intron (NM_138587, intron 5 of 9)	30274.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-67576954-4	chr3	67576439	67577439	+	844.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5829.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135689925-4	chr7	135689447	135690447	+	844.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081117, exon 14 of 14)	3' UTR (NM_001081117, exon 14 of 14)	26432.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115157363-2	chr5	115156863	115157863	+	844.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_175403, intron 1 of 4)	intron (NM_175403, intron 1 of 4)	813.0	NM_175403	109154.0	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	0.0	0.0	1.0	0.0	5.5	0.0
Merged-chr5-34372723-4	chr5	34372224	34373224	+	844.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243123, intron 1 of 20)	intron (NM_001243123, intron 1 of 20)	2791.0	NM_001243123	231128.0	Mm.286885	NM_001030306	ENSMUSG00000037210	Fam193a	-	family with sequence similarity 193, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75175153-5	chr14	75174516	75175516	+	844.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	38591.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94087015-4	chr11	94086561	94087561	+	844.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025428, intron 10 of 26)	B1_Mm|SINE|Alu	42856.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	5.5	3.0	0.5	0.5	1.0	3.5
Merged-chr1-74713850-7	chr1	74713366	74714366	+	844.6904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_024264, exon 1 of 9)	exon (NM_024264, exon 1 of 9)	331.0	NM_024264	104086.0	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66250254-4	chr7	66249756	66250756	+	844.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131468.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-40963119-3	chr14	40962567	40963567	+	844.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	3829.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24467105-3	chr7	24466616	24467616	+	844.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011113, intron 3 of 6)	ZP3AR|Satellite|Satellite	4633.0	NM_011113	18793.0	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-52450830-3	chr16	52450382	52451382	+	844.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009655, intron 1 of 15)	intron (NM_009655, intron 1 of 15)	2199.0	NM_009655	11658.0	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-63428826-3	chr10	63428352	63429352	+	844.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1246.0	NM_177612	216033.0	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-85441818-1	chr13	85441318	85442318	+	844.6666869999999	f0_balb.idr	Intergenic	MurERV4_19-int|LTR|ERVK	-152332.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	1.0	1.0	4.5	0.5	6.5	4.5
Merged-chr8-70808447-3	chr8	70807958	70808958	+	844.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008353)	promoter-TSS (NM_008353)	9.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	4.0	7.0	7.5	1.5	9.0	4.0
Merged-chr12-100021835-3	chr12	100021342	100022342	+	844.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	57343.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45010165-4	chr7	45009674	45010674	+	844.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008422, intron 6 of 10)	intron (NM_001008422, intron 6 of 10)	2313.0	NR_106021	102466218.0		NR_106021	ENSMUSG00000098839	Mir7054	Gm27557|mmu-mir-7054	microRNA 7054	ncRNA	7.0	10.0	7.5	0.0	0.0	1.5
Merged-chr12-25217427-3	chr12	25216928	25217928	+	844.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88254.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	4.0	0.0	1.5	2.5	0.0	2.5
Merged-chr15-83128930-3	chr15	83128397	83129397	+	844.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 7 of 7)	intron (NM_001347082, intron 7 of 7)	-6096.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58939576-3	chr11	58939075	58940075	+	844.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022423)	promoter-TSS (NM_022423)	-669.0	NM_022423	108660.0	Mm.249986	NM_022423	ENSMUSG00000020496	Rnf187	2410016F01Rik|AB030190|RACO-1	ring finger protein 187	protein-coding	13.0	13.0	20.5	9.5	9.5	6.5
Merged-chr2-31596689-4	chr2	31596175	31597175	+	844.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290548, intron 6 of 18)	intron (NM_001290548, intron 6 of 18)	-15746.0	NR_105964	102466214.0		NR_105964	ENSMUSG00000098904	Mir6998	Gm28024|mmu-mir-6998	microRNA 6998	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34973285-2	chr13	34972785	34973785	+	844.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9476.0	NM_026947	69123.0	Mm.482475	NM_026947	ENSMUSG00000021416	Eci3	1810022C23Rik|Kseg2	enoyl-Coenzyme A delta isomerase 3	protein-coding	2.0	0.0	0.5	2.0	0.0	0.5
Merged-chr14-77806550-3	chr14	77806077	77807077	+	844.650024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-7609.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	2.0	15.0	7.5	0.0	1.5	4.0
Merged-chr14-55114895-4	chr14	55114383	55115383	+	844.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177049, intron 2 of 5)	CpG	2052.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131678222-4	chr1	131677720	131678720	+	844.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10475.0	NM_001311096	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	2.0	0.0	0.0	0.0	0.0	1.0
Merged-chr15-78869984-4	chr15	78869487	78870487	+	844.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7203.0	NM_145929	106039.0	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	2.0	5.0	7.5	4.0	6.5	1.5
Merged-chr18-35747080-4	chr18	35746556	35747556	+	844.6124880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6502.0	NM_001289592	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-111886178-3	chr4	111885673	111886673	+	844.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145551, intron 11 of 14)	intron (NM_145551, intron 11 of 14)	16623.0	NM_145551	230612.0	Mm.26630	NM_145551	ENSMUSG00000028544	Slc5a9	AI159731|SGLT4	solute carrier family 5 (sodium/glucose cotransporter), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153115892-4	chr2	153115381	153116381	+	844.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 1 of 12)	intron (NM_001172117, intron 1 of 12)	7413.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	14.0	19.5	25.5	3.5	36.5	26.5
Merged-chr6-127272828-4	chr6	127272321	127273321	+	844.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35146.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97078585-3	chr7	97078037	97079037	+	844.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3214.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	21.0	5.5	11.0	13.5	6.5	10.0
Merged-chr11-120825795-2	chr11	120825295	120826295	+	844.5714109999999	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027745)	TTS (NM_027745)	-1248.0	NM_007988	14104.0	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-23247053-6	chr1	23246462	23247462	+	844.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25307.0	NR_029533	387225.0		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-67124284-3	chr6	67123781	67124781	+	844.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86874.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45100186-5	chr2	45099636	45100636	+	844.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	10141.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80788541-4	chr7	80788043	80789043	+	844.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	14788.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	10.5	48.5	12.5	16.0	26.0	15.0
Merged-chr16-35056965-4	chr16	35056399	35057399	+	844.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023587, intron 3 of 6)	intron (NM_023587, intron 3 of 6)	34478.0	NM_023587	70757.0	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114400596-4	chr6	114400085	114401085	+	844.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317126, intron 1 of 1)	intron (NM_001317126, intron 1 of 1)	2499.0	NM_001317126	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55484701-8	chr12	55484190	55485190	+	844.5339359999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7957.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84458743-4	chr2	84458266	84459266	+	844.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355271, intron 2 of 8)	Lx3B|LINE|L1	15408.0	NM_011576	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142354134-2	chr7	142353621	142354621	+	844.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177265, intron 2 of 3)	intron (NM_177265, intron 2 of 3)	18138.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.0	3.0	0.0	5.5	0.0	0.5
Merged-chr9-35524252-2	chr9	35523752	35524752	+	844.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR50|LTR|ERVL	34218.0	NM_013932	30959.0	Mm.291723	NM_013932	ENSMUSG00000032101	Ddx25	AW047046|GRTH	DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	protein-coding	7.0	0.0	0.0	2.0	4.0	0.5
Merged-chr8-85512457-3	chr8	85511953	85512953	+	844.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173866, intron 6 of 11)	intron (NM_173866, intron 6 of 11)	19836.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	13.0	20.5	6.0	5.0	15.0	3.0
Merged-chr10-4389747-2	chr10	4389247	4390247	+	844.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1639.0	NM_001033466	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59951375-2	chr15	59950875	59951875	+	844.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65243.0	NM_027668	71088.0	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147815482-2	chr4	147814984	147815984	+	844.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5696.0	NM_001127189	100041677.0	Mm.327194	NM_001127189	ENSMUSG00000078495	Zfp984	Gm13157	zinc finger protein 984	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88357257-4	chr7	88356755	88357755	+	844.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73018.0	NM_028238	72433.0	Mm.276669	NM_028238	ENSMUSG00000030559	Rab38	2310011F14Rik|AU043391|cht	RAB38, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28429013-4	chr17	28428508	28429508	+	844.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 4 of 10)	intron (NM_010220, intron 4 of 10)	57141.0	NM_010220	14229.0	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-44053111-2	chr17	44052611	44053611	+	844.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25691.0	NM_001168620	83965.0	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128416419-4	chr2	128415929	128416929	+	844.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	12922.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	4.0	17.0	9.5	0.0	4.0	2.0
Merged-chr1-125467665-2	chr1	125467165	125468165	+	844.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-31938.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117864842-2	chr10	117864342	117865342	+	844.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-18868.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56820439-2	chr17	56819939	56820939	+	844.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009056, intron 1 of 16)	B1_Mus2|SINE|Alu	10569.0	NM_009056	19725.0	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131905727-2	chr1	131905227	131906227	+	844.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4731.0	NM_001145804	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86671058-3	chr4	86670521	86671521	+	844.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007408)	promoter-TSS (NM_007408)	-962.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	7.0	15.0	21.0	18.0	14.5	29.5
Merged-chr1-35975895-3	chr1	35975405	35976405	+	844.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-92495.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-70092340-2	chr2	70091840	70092840	+	844.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177376, intron 2 of 34)	RLTR21|LTR|ERVK	53214.0	NM_177376	329421.0	Mm.99648	NM_177376	ENSMUSG00000042064	Myo3b	A430065P19Rik	myosin IIIB	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98883276-2	chr10	98882776	98883776	+	844.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31366.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98937475-4	chr15	98936950	98937950	+	844.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-3060.0	NM_011654	22143.0	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-37272864-2	chr17	37272364	37273364	+	844.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013819, intron 5 of 7)	intron (NM_013819, intron 5 of 7)	2630.0	NM_013819	14991.0	Mm.14437	NM_013819	ENSMUSG00000016206	H2-M3	H-2M3|Hmt|M3a|MuprM3|MuprM301|MuprM302|R4B2	histocompatibility 2, M region locus 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105718284-2	chr4	105717784	105718784	+	844.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-522929.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	4.5	15.0	1.5	0.0	4.0	4.5
Merged-chr12-35308739-2	chr12	35308229	35309229	+	844.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-113832.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	3.5	2.0	1.0	3.5	3.0	3.5
Merged-chr13-112998554-4	chr13	112998043	112999043	+	844.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001037914, exon 6 of 7)	exon (NM_001037914, exon 6 of 7)	4675.0	NM_001037914	622408.0	Mm.360976	NM_001037914	ENSMUSG00000074651	Mcidas	EG622408|Gm6320|Idas|Mci|Mcin	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding	0.0	3.0	0.5	0.0	3.0	0.0
Merged-chr5-148452439-2	chr5	148451939	148452939	+	844.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52535.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99700678-2	chr15	99700178	99701178	+	844.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001289791, exon 10 of 10)	3' UTR (NM_001289791, exon 10 of 10)	-1609.0	NM_031842	83797.0	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	0.0	0.0	1.0	0.0	2.5	1.0
Merged-chr13-99057408-2	chr13	99056908	99057908	+	844.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30513.0	NR_045495	69603.0	Mm.390632	NR_045495	ENSMUSG00000100410	2310020H05Rik	-	RIKEN cDNA 2310020H05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34235522-2	chr7	34235022	34236022	+	844.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-5186.0	NM_008155	14751.0	Mm.589	NM_008155	ENSMUSG00000036427	Gpi1	Amf|Gpi|Gpi-1|Gpi-1r|Gpi-1s|Gpi-1t|Gpi1-r|Gpi1-s|Gpi1-t|Gpi1s|MF|NK|NK/GPI|Nlk|Org|Pgi|Phi	glucose phosphate isomerase 1	protein-coding	0.0	8.0	9.0	8.0	2.0	7.0
Merged-chr5-100664239-6	chr5	100663745	100664745	+	844.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027978, intron 2 of 6)	intron (NM_027978, intron 2 of 6)	10011.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12880355-4	chr17	12879856	12880856	+	844.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4322.0	NM_030726	80978.0	Mm.160368	NM_030726	ENSMUSG00000059408	Mrgprh	Gpr90|Mgrb|MrgH	MAS-related GPR, member H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-12313667-4	chr12	12313185	12314185	+	844.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 2 of 11)	intron (NM_001146119, intron 2 of 11)	51546.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	3.5	2.5	13.5	3.5	2.5	13.5
Merged-chr9-32962902-3	chr9	32962433	32963433	+	844.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER126|DNA|DNA	-33967.0	NR_131058	330917.0	Mm.488283	NR_131058		Gm27162	A430016B06	predicted gene 27162	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62111254-3	chr18	62110816	62111816	+	844.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68665.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117500384-3	chr8	117499864	117500864	+	844.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 1 of 32)	intron (NM_172285, intron 1 of 32)	2089.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144635988-3	chr2	144635505	144636505	+	844.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025314, intron 4 of 5)	intron (NM_025314, intron 4 of 5)	36052.0	NM_025314	66044.0	Mm.28109	NM_025314	ENSMUSG00000027430	Dtd1	0610006H08Rik|DTD|DUE-B|Hars2	D-tyrosyl-tRNA deacylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40671418-3	chr19	40670894	40671894	+	844.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	11624.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	26.5	19.0	37.0	19.5	29.0	21.5
Merged-chr15-73637729-3	chr15	73637223	73638223	+	844.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12979.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53236336-4	chr18	53235835	53236835	+	844.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30D2_MM|LTR|ERV1	-9327.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101716825-4	chr4	101716327	101717327	+	844.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122899)	promoter-TSS (NM_001122899)	-580.0	NM_001122899	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	8.0	8.5	7.0	8.5	7.0	7.0
Merged-chr17-35264414-4	chr17	35263933	35264933	+	844.375	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267808, intron 7 of 11)	intron (NM_001267808, intron 7 of 11)	1310.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	15.5	37.5	41.0	5.5	15.0	18.5
Merged-chr16-4936278-4	chr16	4935747	4936747	+	844.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037666, intron 2 of 2)	intron (NR_037666, intron 2 of 2)	-2864.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51701573-4	chr3	51701064	51702064	+	844.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	40385.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94943809-4	chr10	94943356	94944356	+	844.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_018797, exon 1 of 31)	exon (NM_018797, exon 1 of 31)	722.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35123400-6	chr7	35122818	35123818	+	844.3541869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4025.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77843735-2	chr18	77843235	77844235	+	844.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 2 of 14)	L1_Mur3|LINE|L1	-47345.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	1.0	2.5	0.0	8.0	0.0	1.5
Merged-chr7-122300780-2	chr7	122300280	122301280	+	844.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	11655.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119985051-2	chr9	119984551	119985551	+	844.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153287)	promoter-TSS (NM_153287)	-309.0	NM_153287	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35584547-2	chr17	35584047	35585047	+	844.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17062.0	NM_175148	69542.0	Mm.265291	NM_175148	ENSMUSG00000039269	2300002M23Rik	Stg|emprin	RIKEN cDNA 2300002M23 gene	protein-coding	7.5	3.0	1.5	4.5	1.0	1.5
Merged-chr8-70330905-2	chr8	70330421	70331421	+	844.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001122829)	TTS (NM_001122829)	1156.0	NM_008107	14559.0	Mm.258280	NM_008107	ENSMUSG00000087408	Gdf1	AI385651|Gdf-1	growth differentiation factor 1	protein-coding	0.5	0.5	1.0	0.0	5.0	4.0
Merged-chr10-84713950-3	chr10	84713417	84714417	+	844.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027423, intron 24 of 27)	intron (NM_027423, intron 24 of 27)	-42131.0	NM_001024918	71137.0	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55392612-3	chr14	55392110	55393110	+	844.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86148.0	NM_001037938	28200.0	Mm.27427	NM_030686	ENSMUSG00000022210	Dhrs4	AI043103|AI790593|CR|D14Ucla2|NDRD|PHCR|PSCD|RRD|mouNRDR	dehydrogenase/reductase (SDR family) member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46360067-3	chr18	46359561	46360561	+	844.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48133.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134202229-4	chr1	134201776	134202776	+	844.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291930, exon 2 of 2)	3' UTR (NM_001291930, exon 2 of 2)	8828.0	NM_016749	53311.0	Mm.379067	NM_016749	ENSMUSG00000042451	Mybph	AI385643|MyBP-H	myosin binding protein H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-105025490-4	chr12	105024986	105025986	+	844.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5655.0	NR_037229	100526471.0		NR_037229	ENSMUSG00000106366	Mir3069	mir-3069|mmu-mir-3069	microRNA 3069	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84829607-3	chr15	84829121	84830121	+	844.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356573, intron 2 of 12)	intron (NM_001356573, intron 2 of 12)	25478.0	NM_001356573	271305.0	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	0.0	0.0	0.0	0.0	0.0	4.0
Merged-chr11-116095202-4	chr11	116094723	116095723	+	844.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8228.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	9.0	32.0	19.0	10.0	33.0	20.0
Merged-chr1-153543181-3	chr1	153542679	153543679	+	844.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028749, intron 2 of 11)	intron (NM_028749, intron 2 of 11)	6535.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27718855-4	chr15	27718326	27719326	+	844.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A|LTR|ERVK	-37284.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-102860318-3	chr13	102859836	102860836	+	844.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	100081.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80688247-4	chr7	80687706	80688706	+	844.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173863, intron 1 of 14)	CpG	671.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	19.0	38.0	24.0	26.5	43.5	30.5
Merged-chr8-41240802-2	chr8	41240302	41241302	+	844.2999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_023662, intron 1 of 37)	intron (NM_023662, intron 1 of 37)	1043.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	18.0	41.0	34.5	2.0	13.0	6.0
Merged-chr17-34455886-4	chr17	34455383	34456383	+	844.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163855, intron 22 of 23)	intron (NM_001163855, intron 22 of 23)	20054.0	NM_030746	632126.0	Mm.484958	NM_030746	ENSMUSG00000058435	Btnl4	Btn3a3|EG632126|NG11	butyrophilin-like 4	protein-coding	4.0	0.0	0.0	0.0	0.0	2.5
Merged-chr7-127392503-6	chr7	127392115	127393115	+	844.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198011, intron 2 of 2)	intron (NM_198011, intron 2 of 2)	1006.0	NM_198011	101604.0	Mm.334241	NM_198011	ENSMUSG00000078580	E430018J23Rik	AI480612	RIKEN cDNA E430018J23 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-28870798-3	chr13	28870256	28871256	+	844.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045054, intron 2 of 7)	intron (NR_045054, intron 2 of 7)	14666.0	NR_045054	72518.0	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124812087-2	chr6	124811587	124812587	+	844.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009415, intron 4 of 6)	intron (NM_009415, intron 4 of 6)	2209.0	NM_009415	21991.0	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|TIM|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63196019-4	chr14	63195557	63196557	+	844.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2532.0	NM_201610	382913.0	Mm.239490	NM_201610	ENSMUSG00000035121	Neil2	Gm1212|NEH2	nei like 2 (E. coli)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76073283-4	chr14	76072758	76073758	+	844.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	37557.0	NM_026177	67467.0	Mm.260767	NM_026177	ENSMUSG00000022008	Gpalpp1	1200011I18Rik|Kiaa1704	GPALPP motifs containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41550733-4	chr13	41550231	41551231	+	844.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B3|LTR|ERVL	-55485.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-94657978-2	chr15	94657478	94658478	+	844.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_178789, intron 2 of 7)	intron (NM_178789, intron 2 of 7)	28793.0	NM_178789	320709.0	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-12090008-4	chr4	12089535	12090535	+	844.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198957, intron 2 of 3)	CpG-9730	665.0	NM_198957	77604.0	Mm.474129	NM_198957	ENSMUSG00000052137	Rbm12b2	AV299215|C430048L16Rik|Rbm12bb	RNA binding motif protein 12 B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6331867-4	chr19	6331358	6332358	+	844.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3121.0	NM_001168488	17283.0	Mm.12917	NM_008583	ENSMUSG00000024947	Men1	AW045611	multiple endocrine neoplasia 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-47020863-2	chr4	47020364	47021364	+	844.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024136, intron 13 of 14)	intron (NM_001024136, intron 13 of 14)	-29150.0	NM_001081141	242425.0	Mm.101909	NM_001081141	ENSMUSG00000039809	Gabbr2	GABABR2|Gb2|Gm425|Gpr51	gamma-aminobutyric acid (GABA) B receptor, 2	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr13-20172416-4	chr13	20171928	20172928	+	844.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	MTA_Mm|LTR|ERVL-MaLR	81921.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.5	0.0	1.0	0.0	1.0	1.5
Merged-chr16-14123372-3	chr16	14122907	14123907	+	844.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081154, intron 21 of 26)	intron (NM_001081154, intron 21 of 26)	35867.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47905748-3	chr19	47905244	47906244	+	844.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001738, intron 1 of 1)	intron (NM_001001738, intron 1 of 1)	13555.0	NM_001001738	414801.0	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	1.0	6.0	4.5	2.0	2.5	4.0
Merged-chr1-64200677-4	chr1	64200175	64201175	+	844.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79286.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64318613-4	chr1	64318109	64319109	+	844.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-197220.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-33128395-4	chr12	33127902	33128902	+	844.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015602, intron 4 of 5)	L1MC1|LINE|L1	19184.0	NR_015602	320046.0	Mm.208337	NR_015602	ENSMUSG00000052125	F730043M19Rik	-	RIKEN cDNA F730043M19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86363912-4	chr1	86363415	86364415	+	844.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015507, intron 1 of 1)	B2_Mm2|SINE|B2	4341.0	NR_015507	319336.0	Mm.389155	NR_015507	ENSMUSG00000073627	C130036L24Rik	-	RIKEN cDNA C130036L24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127049577-4	chr10	127049084	127050084	+	844.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010009, intron 2 of 8)	intron (NM_010009, intron 2 of 8)	1338.0	NM_010009	13115.0	Mm.6216	NM_010009	ENSMUSG00000006724	Cyp27b1	Cp2b|Cyp1|Cyp27b|Cyp40|P450c1|Pddr|Vdd1|Vddr|VddrI|Vdr	cytochrome P450, family 27, subfamily b, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-25862961-4	chr11	25862468	25863468	+	844.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027973, intron 2 of 5)	intron (NR_027973, intron 2 of 5)	-339272.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-21122128-4	chr18	21121632	21122632	+	844.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49788.0	NM_008586	17288.0	Mm.2682	NM_008586	ENSMUSG00000024313	Mep1b	Mep-1b	meprin 1 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149728238-2	chr4	149727738	149728738	+	844.1666869999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_177672, exon 5 of 6)	exon (NM_177672, exon 5 of 6)	9532.0	NM_001284273	230917.0	Mm.266704	NM_177672	ENSMUSG00000044700	Tmem201	AV028368|D4Ertd429e|Net5|Samp1	transmembrane protein 201	protein-coding	6.0	15.5	1.5	0.0	15.5	9.0
Merged-chr3-9251450-4	chr3	9250980	9251980	+	844.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177660, exon 1 of 6)	exon (NM_177660, exon 1 of 6)	913.0	NM_177660	229055.0	Mm.103262	NM_177660	ENSMUSG00000069114	Zbtb10	4832414A18|AU021107|RINZF	zinc finger and BTB domain containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-30872227-3	chr1	30871688	30872688	+	844.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8932.0	NM_001081080	213109.0	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik	PHD finger protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108574333-4	chr8	108573864	108574864	+	844.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_077224, intron 1 of 1)	intron (NR_077224, intron 1 of 1)	10313.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0.0	2.5	0.0	1.0	8.5	0.0
Merged-chr17-25014083-6	chr17	25013565	25014565	+	844.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020608, intron 1 of 20)	CpG	1165.0	NM_020608	57354.0	Mm.328854	NM_020608	ENSMUSG00000038002	Cramp1l	5830477H08Rik|AI256853|AI790734|Cramp1|Tce4|mKIAA1426	cramped chromatin regulator homolog 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167347580-2	chr2	167347080	167348080	+	844.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	1598.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-30550215-3	chr10	30549708	30550708	+	844.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358806, intron 9 of 10)	L1MB7|LINE|L1	50492.0	NM_028604	73681.0	Mm.294503	NM_028604	ENSMUSG00000019792	Trmt11	2410075D05Rik|3110045I18Rik|AW213713	tRNA methyltransferase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-117724227-3	chr12	117723807	117724807	+	844.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 19 of 27)	intron (NM_175930, intron 19 of 27)	-119554.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	1.5	1.0	5.5	1.0	0.5	0.0
Merged-chr11-98700192-4	chr11	98699720	98700720	+	844.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1093.0	NM_009971	12985.0	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-83881355-3	chr3	83880892	83881892	+	844.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-39784.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0.0	4.0	0.5	0.0	0.0	0.5
Merged-chr19-47216923-3	chr19	47216416	47217416	+	844.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021360, intron 1 of 5)	ID_B1|SINE|B4	-11927.0	NM_001163480	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	4.0	0.0	8.5	13.5	11.0	2.0
Merged-chr5-65986490-3	chr5	65985974	65986974	+	844.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	17811.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58542987-4	chr13	58542478	58543478	+	844.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67899.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109622598-2	chr8	109622098	109623098	+	844.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039700, intron 4 of 33)	intron (NM_001039700, intron 4 of 33)	8081.0	NM_181544	244646.0	Mm.436810	NM_181544	ENSMUSG00000048827	Pkd1l3	-	polycystic kidney disease 1 like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-13273491-2	chr2	13272991	13273991	+	844.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2076.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-14206227-2	chr17	14205727	14206727	+	844.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2396.0	NM_172826	240025.0	Mm.79993	NM_172826	ENSMUSG00000048826	Dact2	2900084M21Rik|A630024E20|Dpr2|Frd2|dapper2	dishevelled-binding antagonist of beta-catenin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52618758-4	chr13	52618262	52619262	+	844.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 3 of 13)	intron (NM_011518, intron 3 of 13)	21880.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172346269-3	chr1	172345692	172346692	+	844.142883	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	4982.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	39.0	39.5	27.0	21.0	42.0	30.5
Merged-chr2-30447423-4	chr2	30446931	30447931	+	844.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_138748, exon 10 of 10)	3' UTR (NM_138748, exon 10 of 10)	26768.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103849021-4	chr2	103848523	103849523	+	844.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38401.0	NR_040514	78031.0	Mm.243867	NR_040514	ENSMUSG00000086687	4930547E08Rik	-	RIKEN cDNA 4930547E08 gene	ncRNA	0.0	0.0	2.0	0.0	0.0	1.0
Merged-chr19-29496390-4	chr19	29495877	29496877	+	844.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25610.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70096528-4	chr14	70095968	70096968	+	844.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3625.0	NM_021328	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30679748-4	chr2	30679261	30680261	+	844.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-1750.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17628433-4	chr6	17627913	17628913	+	844.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8597.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-62521230-3	chr5	62520736	62521736	+	844.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	244941.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9347072-3	chr3	9346583	9347583	+	844.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55995.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19404112-3	chr7	19403558	19404558	+	844.095215	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286039)	promoter-TSS (NM_001286039)	46.0	NM_001286039	232943.0	Mm.213403	NM_146182	ENSMUSG00000040714	Klc3	BC017147|Klct	kinesin light chain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-57680142-4	chr14	57679629	57680629	+	844.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15173.0	NM_020506	57258.0	Mm.202747	NM_020506	ENSMUSG00000021952	Xpo4	B430309A01Rik|mKIAA1721	exportin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29024600-4	chr17	29024106	29025106	+	844.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8054.0	NM_013663	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11659328-3	chr19	11658823	11659823	+	844.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037634, intron 1 of 3)	intron (NM_001037634, intron 1 of 3)	1236.0	NM_001037634	225922.0	Mm.26881	NM_001037634	ENSMUSG00000055895	Oosp2	Gm99|Plac1l|Tmem122	oocyte secreted protein 2	protein-coding	4.0	7.0	1.0	5.5	1.5	3.5
Merged-chr1-165624792-4	chr1	165624301	165625301	+	844.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	B3|SINE|B2	9740.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106903958-4	chr9	106903465	106904465	+	844.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153413, intron 49 of 52)	intron (NM_153413, intron 49 of 52)	-12027.0	NM_029103	74840.0	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	2.5	5.5	9.5	2.0	6.0	1.0
Merged-chr7-47013255-8	chr7	47012693	47013693	+	844.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4779.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108206856-3	chr12	108206363	108207363	+	844.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159910, intron 5 of 5)	intron (NM_001159910, intron 5 of 5)	27125.0	NM_009832	12454.0	Mm.474441	NM_009832	ENSMUSG00000021258	Ccnk	AW123198|AW413594|CPR4|CycK	cyclin K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80440957-3	chr7	80440421	80441421	+	844.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-35485.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	2.0	5.0	2.0	0.0	1.5	5.5
Merged-chr16-18813146-3	chr16	18812649	18813649	+	844.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011672, intron 1 of 11)	intron (NM_011672, intron 1 of 11)	855.0	NM_011672	22230.0	Mm.237594	NM_011672	ENSMUSG00000005262	Ufd1	Ufd1l	ubiquitin recognition factor in ER-associated degradation 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117976327-2	chr11	117975827	117976827	+	844.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6961.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131992529-2	chr2	131992029	131993029	+	844.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175445)	TTS (NM_175445)	37459.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107529563-1	chr11	107529063	107530063	+	844.0	f1_balb.idr	Intergenic	Intergenic	-18397.0	NM_198298	78455.0	Mm.272047	NM_198298	ENSMUSG00000020721	Helz	3110078M01Rik|9430093I07Rik|9630002H22Rik|AI851979|DRHC	helicase with zinc finger domain	protein-coding	1.0	3.0	4.5	0.0	0.0	0.5
Merged-chr17-48039676-3	chr17	48039160	48040160	+	844.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1367.0	NM_029689	76651.0	Mm.76918	NM_029689	ENSMUSG00000094928	1700122O11Rik	-	RIKEN cDNA 1700122O11 gene	protein-coding	0.0	0.0	0.0	2.0	0.0	0.5
Merged-chr11-51821002-4	chr11	51820486	51821486	+	844.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357588, intron 11 of 12)	intron (NM_001357588, intron 11 of 12)	36495.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-125651716-2	chr2	125651216	125652216	+	844.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199022, intron 9 of 11)	intron (NM_199022, intron 9 of 11)	-21384.0	NM_025613	58521.0	Mm.425101	NM_025613	ENSMUSG00000091337	Eid1	2610002K20Rik|Cri1|EID-1|ORF12|PNAS-22|PTD014	EP300 interacting inhibitor of differentiation 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132424895-2	chr4	132424395	132425395	+	844.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2449.0	NM_175306	100169.0	Mm.158361	NM_175306	ENSMUSG00000066043	Phactr4	3110001B12Rik|AI527228|AW495572|C330013F19Rik|N28169|mKIAA4120	phosphatase and actin regulator 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-105676289-3	chr2	105675773	105676773	+	844.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013627, exon 1 of 13)	5' UTR (NM_013627, exon 1 of 13)	144.0	NM_001244202	18508.0	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43509386-4	chr4	43508961	43509961	+	844.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013377)	promoter-TSS (NM_001013377)	-714.0	NM_001013377	230098.0	Mm.331567	NM_001013377	ENSMUSG00000051517	Arhgef39	E130306D19Rik	Rho guanine nucleotide exchange factor (GEF) 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91069741-2	chr2	91069241	91070241	+	844.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290765, intron 1 of 9)	intron (NM_001290765, intron 1 of 9)	574.0	NM_026721	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125600855-1	chr8	125600355	125601355	+	844.0	f1_c57bl6.idr	intron (NR_015535, intron 2 of 2)	intron (NR_015535, intron 2 of 2)	16217.0	NR_015535	75930.0	Mm.195663	NR_015535	ENSMUSG00000110629	4930567H12Rik	4930579P07Rik	RIKEN cDNA 4930567H12 gene	ncRNA	74.5	130.0	124.5	47.5	71.5	92.5
Merged-chr19-55908449-2	chr19	55907949	55908949	+	844.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001331147, exon 6 of 14)	exon (NM_001331147, exon 6 of 14)	13128.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148704861-2	chr4	148704333	148705333	+	844.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61516.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	1.5	0.0	1.5	1.0	3.0	2.0
Merged-chr3-149982639-2	chr3	149982139	149983139	+	844.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	707902.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95948716-1	chr13	95948216	95949216	+	844.0	f1_balb.idr	Intergenic	Intergenic	-56794.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	17.0	35.5	8.0	6.5	21.0	10.0
Merged-chr3-129430685-3	chr3	129430186	129431186	+	844.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2987.0	NR_033594	435755.0	Mm.430561	NR_033594	ENSMUSG00000105712	Pou5f1-rs4	EG435755|Gm5712|Oct4P1|Otf3-rs4|Otf3d	POU domain, class 5, transcription factor 1, related sequence 4	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95232635-1	chr4	95232135	95233135	+	844.0	f0_balb.idr	Intergenic	Intergenic	-180413.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.0	8.5	7.5	10.5	7.5	0.0
Merged-chr1-21271565-3	chr1	21271074	21272074	+	844.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26738.0	NR_002858	241041.0	Mm.290634	NR_002858	ENSMUSG00000025936	Gm4956	EG241041	predicted gene 4956	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-92457140-2	chr2	92456640	92457640	+	844.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_211358, intron 1 of 1)	intron (NM_211358, intron 1 of 1)	2654.0	NM_211358	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118091592-2	chr10	118091092	118092092	+	844.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50195.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	2.0	0.0	0.0	0.0	0.0	1.0
Merged-chr15-58890243-2	chr15	58889743	58890743	+	844.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175151)	TTS (NM_175151)	1014.0	NM_175226	75841.0	Mm.4537	NM_175226	ENSMUSG00000037075	Rnf139	4930555P18Rik	ring finger protein 139	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-5464872-2	chr15	5464372	5465372	+	844.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31446.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50587261-3	chr9	50586748	50587748	+	844.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16601.0	NM_025848	66925.0	Mm.10406	NM_025848	ENSMUSG00000000171	Sdhd	3110001M13Rik|AVLL5809|C78570|PRO19626	succinate dehydrogenase complex, subunit D, integral membrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34738487-1	chr7	34737987	34738987	+	844.0	f1_c57bl6.idr	intron (NM_175140, intron 2 of 3)	intron (NM_175140, intron 2 of 3)	74224.0	NM_175140	68947.0	Mm.29380	NM_175140	ENSMUSG00000060402	Chst8	1500011J21Rik|AI426009	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	protein-coding	3.0	2.5	0.0	0.0	0.0	10.0
Merged-chr19-5463972-2	chr19	5463472	5464472	+	844.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021438, intron 7 of 9)	intron (NM_021438, intron 7 of 9)	3365.0	NM_021438	58249.0	Mm.329656	NM_021438	ENSMUSG00000024911	Fibp	2010004G08Rik|2010005N21Rik|3010027N18Rik	fibroblast growth factor (acidic) intracellular binding protein	protein-coding	0.0	3.0	0.0	0.0	0.0	0.0
Merged-chr9-20978070-2	chr9	20977570	20978570	+	844.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1277.0	NM_010333	14739.0	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-6773186-2	chr9	6772686	6773686	+	844.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-403404.0	NM_001357484	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52905917-2	chr6	52905417	52906417	+	844.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 1 of 4)	intron (NM_173406, intron 1 of 4)	3703.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	0.0	0.0	0.0	3.0	4.5	0.0
Merged-chr9-3004775-4	chr9	3004236	3005236	+	844.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	34007.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108431738-3	chr9	108431191	108432191	+	844.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3209.0	NM_001135198	434438.0	Mm.425598	NM_001135198	ENSMUSG00000047220	Ccdc36	-	coiled-coil domain containing 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92930735-1	chr5	92930235	92931235	+	844.0	f1_c57bl6.idr	intron (NM_001077596, intron 2 of 9)	intron (NM_001077596, intron 2 of 9)	32742.0	NM_001077596	27428.0	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	1.0	0.0	2.0	0.0	1.5	1.0
Merged-chr6-114655470-3	chr6	114654953	114655953	+	844.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 2 of 19)	intron (NM_001253718, intron 2 of 19)	12356.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127496758-1	chr3	127496258	127497258	+	844.0	f0_c57.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	2357.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	19.0	26.5	14.0	23.0	16.0	6.5
Merged-chr2-178055952-2	chr2	178055452	178056452	+	844.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6BA|LTR|ERVK	22473.0	NM_001162922	353208.0	Mm.381194	NM_001162922	ENSMUSG00000078861	Zfp931	2810021G02Rik	zinc finger protein 931	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88827371-2	chr6	88826871	88827871	+	844.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011844, exon 8 of 8)	3' UTR (NM_011844, exon 8 of 8)	14564.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-53421703-1	chr10	53421203	53422203	+	844.0	f0_balb.idr	intron (NR_152767, intron 2 of 2)	intron (NR_152767, intron 2 of 2)	11821.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34018085-2	chr13	34017585	34018585	+	844.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359997, intron 6 of 10)	L1MB3|LINE|L1	15211.0	NM_009068	19766.0	Mm.374799	NM_009068	ENSMUSG00000021408	Ripk1	D330015H01Rik|RIP|RIP-1|Rinp|Rip1	receptor (TNFRSF)-interacting serine-threonine kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-78113320-2	chr8	78112820	78113820	+	844.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100022.0	NM_183096	73301.0	Mm.61243	NM_183096	ENSMUSG00000037101	Ttc29	1700031F13Rik	tetratricopeptide repeat domain 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132114184-4	chr2	132113711	132114711	+	844.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	(CAAAAA)n|Simple_repeat|Simple_repeat	30897.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12210531-4	chr13	12210021	12211021	+	844.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081128, intron 22 of 32)	intron (NM_001081128, intron 22 of 32)	-24033.0	NR_045170	328186.0	Mm.188154	NM_183202		Gm10336	B330003H21	predicted gene 10336	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29128982-4	chr7	29128459	29129459	+	843.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-3808.0	NM_009109	20190.0	Mm.439745	NM_009109	ENSMUSG00000030592	Ryr1	AI528790|RYR-1|Ryr|skrr	ryanodine receptor 1, skeletal muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122814341-4	chr14	122813844	122814844	+	843.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 22 of 24)	intron (NR_153443, intron 22 of 24)	-98686.0	NR_155287	105245866.0	Mm.390754	NM_001039531	ENSMUSG00000075463	Gm15735	4930594M22Rik|F930011C10Rik	predicted gene 15735	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40798611-3	chr9	40798209	40799209	+	843.93335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-2564.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	34.0	58.0	34.5	11.0	20.5	27.5
Merged-chr6-137414745-4	chr6	137414245	137415245	+	843.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 14 of 26)	B3|SINE|B2	4024.0	NM_001164403	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-48149390-4	chr4	48148862	48149862	+	843.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026343, intron 3 of 7)	intron (NM_026343, intron 3 of 7)	24443.0	NM_026343	67727.0	Mm.171334	NM_026343	ENSMUSG00000061455	Stx17	4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351	syntaxin 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20003252-4	chr10	20002731	20003731	+	843.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 2 of 29)	intron (NM_008580, intron 2 of 29)	68705.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	17.0	24.5	12.0	5.0	9.5	2.0
Merged-chr1-36059022-4	chr1	36058519	36059519	+	843.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-9381.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34627484-4	chr17	34626924	34627924	+	843.8988039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019441)	promoter-TSS (NM_019441)	11.0	NM_001302396	54397.0	Mm.373627	NM_019441	ENSMUSG00000015474	Ppt2	0610007M19Rik|AA672937	palmitoyl-protein thioesterase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46837464-3	chr19	46836953	46837953	+	843.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102471, intron 1 of 6)	intron (NM_001102471, intron 1 of 6)	75844.0	NM_001102471	94219.0	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	5.5	8.5	7.5	0.5	4.5	9.0
Merged-chr12-3903643-3	chr12	3903143	3904143	+	843.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 14 of 17)	intron (NM_153743, intron 14 of 17)	11899.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32887434-3	chr19	32886951	32887951	+	843.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	129874.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	8.5	3.0	11.5	4.0	5.5	7.5
Merged-chr3-21995670-3	chr3	21995127	21996127	+	843.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81025.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-7077998-3	chr1	7077478	7078478	+	843.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-10942.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79812420-4	chr10	79811910	79812910	+	843.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023128, intron 6 of 8)	intron (NM_023128, intron 6 of 8)	-8611.0	NM_030218	78906.0	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36784806-3	chr16	36784260	36785260	+	843.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021301, exon 1 of 22)	exon (NM_021301, exon 1 of 22)	202.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94616687-2	chr16	94616187	94617187	+	843.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	intron (NM_001113389, intron 2 of 11)	5268.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-105589544-2	chr14	105589044	105590044	+	843.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102319)	promoter-TSS (NR_102319)	-5.0	NR_102319	380930.0	Mm.427836	NR_102319	ENSMUSG00000115149	9330188P03Rik	Gm1589|mgt-6	RIKEN cDNA 9330188P03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131470767-4	chr1	131470229	131471229	+	843.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	56632.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61554316-2	chr14	61553816	61554816	+	843.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310603, intron 1 of 3)	MTD|LTR|ERVL-MaLR	2570.0	NM_025697	66674.0	Mm.282706	NM_025697	ENSMUSG00000021930	Spryd7	6330409N04Rik|Clld6	SPRY domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72361429-4	chr8	72360942	72361942	+	843.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007944, intron 21 of 23)	MTC|LTR|ERVL-MaLR	42380.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	1.5	9.0	6.0	4.0	19.5	4.5
Merged-chr8-124347369-3	chr8	124346915	124347915	+	843.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86521.0	NM_171824	209966.0	Mm.234233	NM_171824	ENSMUSG00000050751	Pgbd5	2900019M05Rik|AI854313	piggyBac transposable element derived 5	protein-coding	4.5	0.0	4.0	9.0	3.0	3.0
Merged-chr15-100129380-4	chr15	100128888	100129888	+	843.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 2 of 37)	intron (NM_001159361, intron 2 of 37)	-25008.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108070507-4	chr3	108070002	108071002	+	843.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14900.0	NM_001346665	109674.0	Mm.274335	NM_028779	ENSMUSG00000027889	Ampd2	1200014F01Rik|AI552571|Ampd-2|m4521Dajl	adenosine monophosphate deaminase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121844154-2	chr5	121843654	121844654	+	843.7999880000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4843.0	NM_175474	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85323395-1	chr1	85322895	85323895	+	843.7999880000001	f1_balb.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	-52829.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97125520-4	chr7	97125006	97126006	+	843.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	43755.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	36.0	106.5	75.5	70.0	145.5	68.5
Merged-chr2-122569656-4	chr2	122569190	122570190	+	843.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41587.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	37.0	53.5	29.5	30.0	51.5	46.5
Merged-chr1-43467128-4	chr1	43466624	43467624	+	843.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	21373.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-49935918-4	chr17	49935319	49936319	+	843.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	254678.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.0	0.0	2.5	0.0	2.0	1.5
Merged-chr3-116205653-4	chr3	116205136	116206136	+	843.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47848.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90072939-3	chr16	90072453	90073453	+	843.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69284.0	NR_033476	100038709.0	Mm.484070	NR_033476		Gm10789	-	predicted gene 10789	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36530045-3	chr18	36529513	36530513	+	843.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001271546, exon 5 of 22)	exon (NM_001271546, exon 5 of 22)	1861.0	NM_001271545	240215.0	Mm.135463	NM_172830	ENSMUSG00000024485	Slc4a9	AE4|D630003B07|D630024F24Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86500048-4	chr1	86499531	86500531	+	843.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26526.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85687597-2	chr1	85687090	85688090	+	843.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_013673, intron 11 of 19)	intron (NM_013673, intron 11 of 19)	37602.0	NM_001313714	20684.0	Mm.290906	NM_013673	ENSMUSG00000026222	Sp100	A430075G10Rik	nuclear antigen Sp100	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134556386-4	chr1	134555879	134556879	+	843.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3799.0	NM_152895	75605.0	Mm.28995	NM_152895	ENSMUSG00000042207	Kdm5b	2010009J12Rik|2210016I17Rik|AW556288|D1Ertd202e|Jarid1b|PLU-1|PUT1|Plu1|RBBP2H1A|Rb-Bp2|mKIAA4034	lysine (K)-specific demethylase 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46344529-4	chr4	46344131	46345131	+	843.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183298, exon 1 of 1)	exon (NM_183298, exon 1 of 1)	437.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	0.0	0.0	1.5	0.0	0.0	0.5
Merged-chr17-50729704-4	chr17	50729209	50730209	+	843.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31028.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44055679-3	chr7	44055150	44056150	+	843.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020268, exon 3 of 5)	exon (NM_020268, exon 3 of 5)	3360.0	NM_020268	16619.0	Mm.445911	NM_020268	ENSMUSG00000063177	Klk1b27	Gk27|Klk21l|Klk27|mGK-27	kallikrein 1-related peptidase b27	protein-coding	0.0	2.0	0.0	9.5	0.0	4.5
Merged-chr12-99381062-4	chr12	99380563	99381563	+	843.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 2 of 5)	Lx4A|LINE|L1	69011.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-82927330-4	chr1	82926839	82927839	+	843.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16|LTR|ERVK	87879.0	NM_001347077	15463.0	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86668342-3	chr4	86667839	86668839	+	843.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007408, intron 3 of 7)	intron (NM_007408, intron 3 of 7)	1720.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-75151328-3	chr5	75150835	75151835	+	843.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347718)	promoter-TSS (NM_001347718)	-916.0	NR_144636	18595.0	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	1.0	0.0	0.0	1.0	0.0	0.0
Merged-chr13-12106899-3	chr13	12106329	12107329	+	843.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_023868, exon 1 of 105)	5' UTR (NM_023868, exon 1 of 105)	116.0	NM_023868	20191.0	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70707900-4	chr12	70707377	70708377	+	843.6875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117637.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-44988922-6	chr2	44988629	44989629	+	843.680542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001355289, exon 11 of 11)	exon (NM_001355289, exon 11 of 11)	34048.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100497115-3	chr7	100496623	100497623	+	843.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011671, exon 4 of 8)	exon (NM_011671, exon 4 of 8)	3765.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94337764-1	chr10	94337264	94338264	+	843.6666869999999	f0_balb.idr	intron (NM_001359762, intron 1 of 4)	polypurine|Low_complexity|Low_complexity	25815.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	61.5	79.0	87.0	41.0	117.0	97.5
Merged-chr15-31366064-4	chr15	31365556	31366556	+	843.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027496, intron 1 of 3)	intron (NM_027496, intron 1 of 3)	1703.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-5514402-4	chr5	5513853	5514853	+	843.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001193660, exon 2 of 5)	5' UTR (NM_001193660, exon 2 of 5)	436.0	NM_001193660	64945.0	Mm.40132	NM_022890	ENSMUSG00000046798	Cldn12	-	claudin 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20114267-2	chr14	20113767	20114767	+	843.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31095.0	NM_026209	67509.0	Mm.292423	NM_026209	ENSMUSG00000045107	Saysd1	1810063B07Rik|4930488P03Rik	SAYSVFN motif domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141539680-2	chr4	141539202	141540202	+	843.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-1105.0	NM_019763	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	51.0	144.5	84.0	28.5	109.0	61.5
Merged-chr8-94199678-4	chr8	94199159	94200159	+	843.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14905.0	NM_001357266	71805.0	Mm.458170	NM_172410	ENSMUSG00000032939	Nup93	2410008G02Rik	nucleoporin 93	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65689812-2	chr18	65689312	65690312	+	843.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_207255)	TTS (NM_207255)	-8456.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	41.0	42.0	37.0	49.5	49.0	74.0
Merged-chr11-88099151-4	chr11	88098641	88099641	+	843.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198013)	promoter-TSS (NM_198013)	-5.0	NM_198013	103841.0	Mm.374846	NM_198013	ENSMUSG00000018378	Cuedc1	AI841487|C330016O16Rik	CUE domain containing 1	protein-coding	2.5	2.0	1.0	2.5	0.5	0.5
Merged-chr16-62786175-4	chr16	62785693	62786693	+	843.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178925, intron 1 of 5)	Lx8|LINE|L1	523.0	NM_178925	106338.0	Mm.26321	NM_178925	ENSMUSG00000050312	Nsun3	6720484A09Rik|AU022521	NOL1/NOP2/Sun domain family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75099951-4	chr8	75099468	75100468	+	843.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010442, exon 5 of 5)	exon (NM_010442, exon 5 of 5)	6350.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	3.0	0.0	0.5	0.0	1.0	11.5
Merged-chr3-88144729-4	chr3	88144281	88145281	+	843.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	2409.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-59342230-4	chr3	59341744	59342744	+	843.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162884, intron 1 of 6)	L1MA4A|LINE|L1	2012.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-58225423-2	chr10	58224923	58225923	+	843.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7252.0	NM_001081954	664783.0	Mm.482575	NM_001081954		Dux	AW822073|Dux4|Duxbl|EG664783	double homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-113787398-7	chr11	113786930	113787930	+	843.595215	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172800, intron 44 of 44)	intron (NM_172800, intron 44 of 44)	-35615.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108447609-5	chr6	108446995	108447995	+	843.5904539999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-42248.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	17.5	33.5	30.0	23.5	62.0	52.0
Merged-chr11-78453890-2	chr11	78453390	78454390	+	843.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-11811.0	NM_026740	52466.0	Mm.131618	NM_026740	ENSMUSG00000020829	Slc46a1	1110002C08Rik|D11Ertd18e|HCP1|Pcft	solute carrier family 46, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105662874-3	chr5	105662433	105663433	+	843.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-37036.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	14.0	19.0	17.0	79.0	154.0	146.0
Merged-chr17-34420175-3	chr17	34419677	34420677	+	843.5833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001177, intron 5 of 19)	intron (NM_001001177, intron 5 of 19)	21357.0	NM_001163855	407788.0	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	1.5	0.5	0.5	0.0	0.5	0.5
Merged-chr2-154737193-3	chr2	154736744	154737744	+	843.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-53866.0	NM_001139512	19383.0	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	1.0	0.5	0.0	6.0	8.5	12.5
Merged-chr13-63563922-4	chr13	63563413	63564413	+	843.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001328514, intron 1 of 23)	CpG-3956	1822.0	NM_008957	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63119052-3	chr4	63118559	63119559	+	843.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028326, intron 12 of 14)	intron (NM_028326, intron 12 of 14)	35113.0	NM_007443	11699.0	Mm.2197	NM_007443	ENSMUSG00000028356	Ambp	AI194774|ASPI|HI-30|Intin4|Itil|UTI	alpha 1 microglobulin/bikunin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47393919-3	chr14	47393426	47394426	+	843.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144553, intron 15 of 18)	PB1|SINE|Alu	20066.0	NM_001145953	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	9.0	5.5	5.5	3.0	19.5	5.0
Merged-chr15-82138772-4	chr15	82138269	82139269	+	843.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_137170, intron 5 of 5)	intron (NR_137170, intron 5 of 5)	-8500.0	NM_033218	20788.0	Mm.38016	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-19301425-4	chr2	19300896	19301896	+	843.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271565, intron 17 of 17)	intron (NM_001271565, intron 17 of 17)	-42921.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-145923343-2	chr3	145922843	145923843	+	843.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009740)	promoter-TSS (NM_009740)	-919.0	NM_009740	12042.0	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65689073-2	chr18	65688567	65689567	+	843.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_207255, exon 6 of 6)	3' UTR (NM_207255, exon 6 of 6)	-9201.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	4.0	5.5	7.0	3.0	4.5	10.0
Merged-chr18-62971391-4	chr18	62970871	62971871	+	843.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6545.0	NM_028017	108123.0	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3871293-2	chr4	3870793	3871793	+	843.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_020021, exon 1 of 1)	exon (NM_020021, exon 1 of 1)	812.0	NM_020021	17451.0	Mm.459300	NM_020021	ENSMUSG00000078365	Mos	c-mos	Moloney sarcoma oncogene	protein-coding	1.0	0.0	2.0	2.0	0.0	1.5
Merged-chr18-11055889-2	chr18	11055389	11056389	+	843.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010258, intron 2 of 6)	intron (NM_010258, intron 2 of 6)	-3322.0	NR_105022	68434.0	Mm.57626	NR_105022	ENSMUSG00000097222	1010001N08Rik	Gata6as	RIKEN cDNA 1010001N08 gene	ncRNA	3.0	0.0	2.0	0.0	0.0	3.0
Merged-chr11-120452289-2	chr11	120451789	120452789	+	843.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_126089, intron 1 of 3)	intron (NR_126089, intron 1 of 3)	1211.0	NR_126089	18588.0	Mm.39200	NM_012065	ENSMUSG00000025386	Pde6g	Pdeg|p3AT	phosphodiesterase 6G, cGMP-specific, rod, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45402296-2	chr2	45401796	45402796	+	843.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-284854.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121872705-2	chr14	121872205	121873205	+	843.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5565.0	NR_131002	78312.0	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73875970-2	chr17	73875470	73876470	+	843.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71129.0	NM_020578	57440.0	Mm.18526	NM_020578	ENSMUSG00000024065	Ehd3	Ehd2	EH-domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3779871-2	chr12	3779371	3780371	+	843.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007886, intron 18 of 18)	intron (NM_007886, intron 18 of 18)	-27109.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30691519-3	chr2	30691000	30692000	+	843.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-13489.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55741909-2	chr14	55741409	55742409	+	843.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026819, intron 4 of 8)	Lx8|LINE|L1	3775.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122093211-1	chr5	122092711	122093711	+	843.5	f0_balb.idr	Intergenic	Intergenic	-7740.0	NM_010861	17906.0	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88248825-2	chr17	88248325	88249325	+	843.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	123313.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-142103485-2	chr4	142102985	142103985	+	843.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_144531, exon 14 of 14)	3' UTR (NM_144531, exon 14 of 14)	-19181.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	1.5	5.5	5.0	2.0	0.5	8.5
Merged-chr9-66510518-2	chr9	66510018	66511018	+	843.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175206, exon 2 of 2)	3' UTR (NM_175206, exon 2 of 2)	4075.0	NM_175206	74165.0	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31397287-2	chr14	31396787	31397787	+	843.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	20390.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100948905-2	chr11	100948405	100949405	+	843.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-9365.0	NM_011486	20848.0	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124932143-4	chr6	124931685	124932685	+	843.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145385, intron 2 of 8)	intron (NM_145385, intron 2 of 8)	797.0	NM_001170341	30853.0	Mm.29737	NM_145385	ENSMUSG00000030120	Mlf2	AI256856|AU018944|C77284	myeloid leukemia factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53233745-2	chr11	53233245	53234245	+	843.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66734.0	NM_008300	15525.0	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-54578552-3	chr9	54578048	54579048	+	843.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25B|LTR|ERVK	-7963.0	NM_029573	67834.0	Mm.279195	NM_029573	ENSMUSG00000032279	Idh3a	1110003P10Rik|1500012E04Rik|AA407078|AI316514	isocitrate dehydrogenase 3 (NAD+) alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37625620-2	chr1	37625120	37626120	+	843.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_028096, exon 7 of 10)	exon (NM_028096, exon 7 of 10)	-84604.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34644809-4	chr2	34644291	34645291	+	843.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110441.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114686700-2	chr11	114686200	114687200	+	843.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 2 of 13)	intron (NM_053273, intron 2 of 13)	11232.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139197639-4	chr4	139197139	139198139	+	843.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	3528.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	69.0	129.5	92.0	58.5	120.0	85.0
Merged-chr5-8895570-2	chr5	8895070	8896070	+	843.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008830, intron 2 of 27)	intron (NM_008830, intron 2 of 27)	1849.0	NM_008830	18670.0	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143704542-2	chr5	143704042	143705042	+	843.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011182, intron 9 of 12)	intron (NM_011182, intron 9 of 12)	27738.0	NM_029749	76800.0	Mm.259620	NM_029749	ENSMUSG00000051306	Usp42	2410140K03Rik|3110031A07Rik|A630018G05Rik|D5Ertd591e	ubiquitin specific peptidase 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-75593412-2	chr16	75592912	75593912	+	843.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198302, intron 1 of 4)	intron (NM_198302, intron 1 of 4)	521.0	NM_198302	224344.0	Mm.273214	NM_198302	ENSMUSG00000032940	Rbm11	A330018F01	RNA binding motif protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45042868-2	chr2	45042368	45043368	+	843.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-19691.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116079346-4	chr9	116078856	116079856	+	843.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96007.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-18031731-2	chr6	18031231	18032231	+	843.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1286.0	NM_023653	22413.0	Mm.33653	NM_023653	ENSMUSG00000010797	Wnt2	2610510E18Rik|Int1l1|Irp|Mirp|Wnt-2|Wnt2a	wingless-type MMTV integration site family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145315640-2	chr2	145315140	145316140	+	843.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053195, intron 2 of 16)	intron (NM_053195, intron 2 of 16)	73029.0	NM_053195	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121694671-2	chr8	121694171	121695171	+	843.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35888.0	NM_020605	57340.0	Mm.306870	NM_020605	ENSMUSG00000025318	Jph3	JP-3|Jp3	junctophilin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59850404-3	chr4	59849919	59850919	+	843.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	intron (NM_172468, intron 1 of 8)	44769.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	10.5	1.5	1.5	6.5	11.5	1.5
Merged-chr19-12467677-4	chr19	12467275	12468275	+	843.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172442, exon 9 of 9)	3' UTR (NM_172442, exon 9 of 9)	6996.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	9.5	31.0	12.5	12.0	32.0	26.5
Merged-chr6-42324555-5	chr6	42324000	42325000	+	843.4500119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001113327, exon 1 of 6)	5' UTR (NM_001113327, exon 1 of 6)	140.0	NM_001286584	76156.0	Mm.234314	NM_029528	ENSMUSG00000029861	Fam131b	6330503C03Rik|6530406I18Rik|AV277466	family with sequence similarity 131, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132235337-3	chr2	132234863	132235863	+	843.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12425.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92670501-3	chr16	92669999	92670999	+	843.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 4 of 6)	intron (NM_001111022, intron 4 of 6)	26830.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	8.5	14.5	3.0	0.5	16.0	9.0
Merged-chr12-32816216-3	chr12	32815697	32816697	+	843.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-4138.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.0	0.0	0.0	3.5	0.0	0.0
Merged-chr8-86873656-3	chr8	86873194	86874194	+	843.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	11564.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	11.5	23.5	13.0	9.0	28.5	11.0
Merged-chr12-87375865-3	chr12	87375371	87376371	+	843.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011479, intron 1 of 11)	B3|SINE|B2	12484.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-84354559-4	chr11	84354060	84355060	+	843.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133360, intron 43 of 53)	intron (NM_133360, intron 43 of 53)	158941.0	NM_019816	56321.0	Mm.257482	NM_019816	ENSMUSG00000018697	Aatf	4933415H02Rik|5830465M17Rik|Che-1|Trb	apoptosis antagonizing transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-73096030-3	chr11	73095439	73096439	+	843.4111330000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361245, intron 1 of 30)	intron (NM_001361245, intron 1 of 30)	5344.0	NM_172944	16407.0	Mm.96	NM_008399	ENSMUSG00000005947	Itgae	A530055J10|CD103|aM290|alpha-E1|alpha-M290	integrin alpha E, epithelial-associated	protein-coding	5.0	10.5	21.5	15.5	25.0	9.5
Merged-chr9-65568103-3	chr9	65567559	65568559	+	843.388916	f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 2 of 5)	intron (NM_153119, intron 2 of 5)	12028.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	14.0	22.0	27.0	23.0	48.0	39.0
Merged-chr6-136939609-3	chr6	136939101	136940101	+	843.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301303)	promoter-TSS (NM_001301303)	-74.0	NM_001301303	11857.0	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	139.0	307.5	198.0	67.5	128.5	81.0
Merged-chr19-60144548-4	chr19	60144103	60145103	+	843.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_026942)	promoter-TSS (NR_026942)	-72.0	NR_026942	107376.0	Mm.245813	NR_026942	ENSMUSG00000053117	E330013P04Rik	9930018I18Rik|AW492152	RIKEN cDNA E330013P04 gene	ncRNA	0.0	4.0	1.0	2.5	13.5	6.0
Merged-chr7-45403740-4	chr7	45403256	45404256	+	843.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2204.0	NM_010596	16495.0	Mm.12955	NM_010596	ENSMUSG00000038201	Kcna7	Kv1.7	potassium voltage-gated channel, shaker-related subfamily, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36128665-4	chr1	36128181	36129181	+	843.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15632.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98692391-8	chr15	98691904	98692904	+	843.34375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14943.0	NM_172612	223881.0	Mm.274010	NM_172612	ENSMUSG00000054855	Rnd1	A830014L09Rik|Arhs	Rho family GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6262438-4	chr19	6261951	6262951	+	843.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_194348)	TTS (NM_194348)	-2192.0	NR_029830	723957.0		NR_029830	ENSMUSG00000065582	Mir194-2	Mirn194-2|mir-194-2	microRNA 194-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87286925-2	chr17	87286425	87287425	+	843.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 1 of 19)	intron (NM_028639, intron 1 of 19)	4039.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46317987-2	chr19	46317583	46318583	+	843.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028627, intron 11 of 17)	CpG	8783.0	NM_001347454	73728.0	Mm.268532	NM_028627	ENSMUSG00000037126	Psd	1110007H17Rik|A930015K15|Efa6|Efa6a|Psdl|mKIAA2011	pleckstrin and Sec7 domain containing	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr10-77976221-2	chr10	77975721	77976721	+	843.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2429.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99729098-3	chr5	99728603	99729603	+	843.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030692)	promoter-TSS (NR_030692)	-43.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3429929-3	chr12	3429425	3430425	+	843.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270988, intron 1 of 11)	intron (NM_001270988, intron 1 of 11)	3068.0	NM_172421	75302.0	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2, transcriptional regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100432092-3	chr12	100431602	100432602	+	843.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 5 of 19)	MTD|LTR|ERVL-MaLR	88720.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125470132-3	chr7	125469635	125470635	+	843.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360659, intron 5 of 7)	intron (NM_001360659, intron 5 of 7)	21407.0	NM_001360659	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	0.5	15.5	6.0	0.0	1.0	0.5
Merged-chr4-6373903-6	chr4	6373366	6374366	+	843.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	MLT1A0|LTR|ERVL-MaLR	8186.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	27.5	95.0	49.5	31.0	75.5	51.5
Merged-chr16-58685732-4	chr16	58685177	58686177	+	843.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15469.0	NM_007757	12892.0	Mm.291519	NM_007757	ENSMUSG00000022742	Cpox	CPX|Cpo|HCP|cac|nct	coproporphyrinogen oxidase	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr3-88441079-4	chr3	88440604	88441604	+	843.30835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105978)	promoter-TSS (NR_105978)	-153.0	NR_105978	102465611.0		NR_105978	ENSMUSG00000098655	Mir7011	Gm27677|mmu-mir-7011	microRNA 7011	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21896557-4	chr19	21896088	21897088	+	843.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	118248.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	5.5	24.5	0.5	0.5	9.0	8.0
Merged-chr14-102616131-4	chr14	102615623	102616623	+	843.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	366509.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49800464-3	chr16	49799956	49800956	+	843.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55198.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-89883772-3	chr13	89883288	89884288	+	843.255554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028012, intron 7 of 7)	intron (NM_028012, intron 7 of 7)	-141276.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	0.0	0.0	3.5	0.0	2.0	0.5
Merged-chr17-22410944-4	chr17	22410429	22411429	+	843.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-13273.0	NM_001331197	74149.0	Mm.30767	NM_198003	ENSMUSG00000071266	Zfp946	1300003B13Rik	zinc finger protein 946	protein-coding	2.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140739085-2	chr5	140738585	140739585	+	843.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	B1_Mus1|SINE|Alu	14958.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-147184340-2	chr2	147183859	147184859	+	843.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_010919, exon 2 of 2)	exon (NM_010919, exon 2 of 2)	276.0	NR_030769	100313531.0	Mm.405189	NR_030769	ENSMUSG00000086509	Nkx2-2os	Gm14112|Nkx2-2as|Nkx2.2AS	NK2 homeobox 2, opposite strand	ncRNA	1.0	1.0	0.0	1.0	3.5	4.0
Merged-chr5-138173337-2	chr5	138172837	138173837	+	843.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_021392, intron 4 of 14)	RLTR49|LTR|ERVK	1316.0	NM_021392	11781.0	Mm.113205	NM_021392	ENSMUSG00000019518	Ap4m1	4930443L05Rik|Ap4m4	adaptor-related protein complex AP-4, mu 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-121040060-2	chr4	121039560	121040560	+	843.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007741, intron 1 of 31)	intron (NM_007741, intron 1 of 31)	494.0	NM_007741	12840.0	Mm.269384	NM_007741	ENSMUSG00000028626	Col9a2	AI427499|Col9a-2	collagen, type IX, alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24587956-4	chr2	24587433	24588433	+	843.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112334.0	NM_011040	18510.0	Mm.2533	NM_011040	ENSMUSG00000026976	Pax8	Pax-8	paired box 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120629069-2	chr11	120628569	120629569	+	843.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010756, exon 3 of 3)	3' UTR (NM_010756, exon 3 of 3)	-4067.0	NM_153056	209011.0	Mm.292957	NM_153056	ENSMUSG00000025138	Sirt7	-	sirtuin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27045242-4	chr14	27044727	27045727	+	843.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134437, intron 1 of 12)	intron (NM_134437, intron 1 of 12)	6226.0	NM_134437	171463.0	Mm.206726	NM_027265	ENSMUSG00000040717	Il17rd	2810004A10Rik|AI428510|Sef|Sef-S	interleukin 17 receptor D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155550643-3	chr4	155550146	155551146	+	843.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160016, intron 7 of 11)	intron (NM_001160016, intron 7 of 11)	-11735.0	NM_138671	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	2.5	25.5	5.5	9.5	16.5	2.0
Merged-chr6-129518205-4	chr6	129517695	129518695	+	843.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081186, exon 5 of 5)	3' UTR (NM_001081186, exon 5 of 5)	5638.0	NM_001081186	330428.0	Mm.44237	NM_001081186	ENSMUSG00000030160	Tmem52b	D630042F21Rik	transmembrane protein 52B	protein-coding	0.0	3.0	9.0	0.5	0.0	8.5
Merged-chr11-83424893-2	chr11	83424393	83425393	+	843.1999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013759, intron 4 of 5)	intron (NM_001013759, intron 4 of 5)	4628.0	NM_001013759	237891.0	Mm.340523	NM_001013759	ENSMUSG00000020686	Gas2l2	-	growth arrest-specific 2 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4338395-4	chr19	4337889	4338889	+	843.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001984, intron 12 of 20)	B3A|SINE|B2	-32167.0	NM_001290818	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-3545114-4	chr13	3544603	3545603	+	843.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008112, intron 1 of 10)	intron (NM_008112, intron 1 of 10)	7028.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	21.5	9.5	10.0	3.5	6.0	20.5
Merged-chr1-36572930-4	chr1	36572406	36573406	+	843.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-14525.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42778092-3	chr19	42777588	42778588	+	843.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362410, intron 2 of 16)	intron (NM_001362410, intron 2 of 16)	558.0	NM_001362410	192236.0	Mm.218381	NM_019424	ENSMUSG00000025188	Hps1	6030422N11Rik|BB405864|Gm21361|Hps|ep	HPS1, biogenesis of lysosomal organelles complex 3 subunit 1	protein-coding	0.5	0.0	4.0	0.5	10.5	3.0
Merged-chr2-14230051-5	chr2	14229495	14230495	+	843.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 1 of 29)	intron (NM_008625, intron 1 of 29)	581.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26833122-4	chr8	26832549	26833549	+	843.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8626.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5174529-4	chr6	5174006	5175006	+	843.1416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011134, intron 7 of 8)	intron (NM_011134, intron 7 of 8)	19440.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0.0	0.5	1.0	0.0	0.5	0.0
Merged-chr11-116379758-4	chr11	116379263	116380263	+	843.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027258, intron 2 of 18)	intron (NM_027258, intron 2 of 18)	33269.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr8-71366815-4	chr8	71366273	71367273	+	843.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145780)	promoter-TSS (NM_001145780)	-75.0	NM_001145780	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	87.5	155.5	150.5	83.0	182.0	144.0
Merged-chr16-44777932-4	chr16	44777353	44778353	+	843.125	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021325, intron 1 of 6)	B1_Mur2|SINE|Alu	12117.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46876004-4	chr19	46875507	46876507	+	843.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033569, intron 6 of 7)	intron (NM_033569, intron 6 of 7)	86344.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr3-97965606-4	chr3	97965093	97966093	+	843.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033779, intron 1 of 1)	intron (NM_001033779, intron 1 of 1)	35420.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-105896228-4	chr14	105895619	105896619	+	843.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011897, intron 1 of 1)	CpG	700.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79577940-4	chr11	79577441	79578441	+	843.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010897, intron 57 of 57)	intron (NM_010897, intron 57 of 57)	-13271.0	NM_175543	268451.0	Mm.130656	NM_175543	ENSMUSG00000017639	Rab11fip4	A730072L08Rik|RAB11-FIP4|mKIAA1821	RAB11 family interacting protein 4 (class II)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59899747-4	chr10	59899248	59900248	+	843.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20157.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136982446-2	chr5	136981945	136982945	+	843.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310748, intron 5 of 5)	intron (NM_001310748, intron 5 of 5)	4459.0	NM_001310747	70103.0	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	0.0	1.5	1.5	4.5	2.0	1.0
Merged-chr17-56442902-2	chr17	56442402	56443402	+	843.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252455, intron 6 of 27)	intron (NM_001252455, intron 6 of 27)	19319.0	NM_001252456	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54610129-3	chr14	54609644	54610644	+	843.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4236.0	NM_028890	74359.0	Mm.79815	NM_028890	ENSMUSG00000022179	4931414P19Rik	Rtfc	RIKEN cDNA 4931414P19 gene	protein-coding	0.0	10.5	6.5	2.0	1.0	7.0
Merged-chr13-23730639-3	chr13	23730129	23731129	+	843.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8178.0	NM_015786	50708.0	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	38.5	88.0	66.0	16.5	18.0	8.0
Merged-chr7-49093740-3	chr7	49093238	49094238	+	843.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	68420.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112146504-4	chr12	112146041	112147041	+	843.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097621, intron 1 of 15)	CpG-3550	333.0	NM_001097621	668303.0	Mm.313104	NM_001097621	ENSMUSG00000021294	Kif26a	mKIAA1236	kinesin family member 26A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63079518-1	chr14	63079018	63080018	+	843.0	f0_balb.idr	Intergenic	Intergenic	24445.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97520641-1	chr15	97520141	97521141	+	843.0	f0_balb.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	185181.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-83726354-2	chr2	83725854	83726854	+	843.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008402, intron 1 of 29)	intron (NM_008402, intron 1 of 29)	1957.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-13870443-3	chr6	13869954	13870954	+	843.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001352887, exon 3 of 3)	3' UTR (NM_001352887, exon 3 of 3)	1064.0	NM_001352887	66520.0	Mm.29615	NM_183258		2610001J05Rik	C79299	RIKEN cDNA 2610001J05 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66680156-4	chr15	66679636	66680636	+	843.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 8 of 47)	intron (NM_009375, intron 8 of 47)	9366.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95766890-3	chr10	95766451	95767451	+	843.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCTCTG)n|Simple_repeat|Simple_repeat	-173712.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46048035-1	chr19	46047535	46048535	+	843.0	f1_c57bl6.idr	Intergenic	Intergenic	-2724.0	NM_001113408	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	0.0	0.0	3.5	0.0	2.5	0.5
Merged-chr8-22166910-2	chr8	22166410	22167410	+	843.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011848)	promoter-TSS (NM_011848)	-475.0	NM_011848	23954.0	Mm.41413	NM_011848	ENSMUSG00000031478	Nek3	-	NIMA (never in mitosis gene a)-related expressed kinase 3	protein-coding	6.0	0.0	4.5	0.0	0.5	2.5
Merged-chr4-93444020-1	chr4	93443520	93444520	+	843.0	f1_balb.idr	Intergenic	Lx5|LINE|L1	-108509.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	0.0	0.0	1.0	0.0	0.0	3.0
Merged-chr17-45575204-2	chr17	45574704	45575704	+	843.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1943.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110222556-2	chr7	110222056	110223056	+	843.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009302, intron 1 of 11)	intron (NM_009302, intron 1 of 11)	853.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122019744-2	chr10	122019244	122020244	+	843.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081037, intron 1 of 21)	intron (NM_001081037, intron 1 of 21)	27571.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73492231-3	chr2	73491688	73492688	+	843.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	Lx7|LINE|L1	-6435.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-8094809-2	chr14	8094310	8095310	+	843.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-3401.0	NM_145458	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55622885-2	chr4	55622385	55623385	+	843.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90410.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	25.0	66.0	55.5	9.5	88.5	81.5
Merged-chr4-45010971-4	chr4	45010435	45011435	+	843.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173399, intron 1 of 1)	intron (NM_173399, intron 1 of 1)	1477.0	NM_001163284	230119.0	Mm.44222	NM_173399	ENSMUSG00000049657	Zbtb5	5930421I10|9430083K24Rik|AI646847|mKIAA0354	zinc finger and BTB domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121795109-4	chr11	121794576	121795576	+	843.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35142.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41760780-4	chr19	41760178	41761178	+	843.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13717.0	NR_040320	100502871.0	Mm.394485	NR_040320		Gm19424	-	predicted gene, 19424	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35984912-2	chr16	35984412	35985412	+	843.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008465, intron 1 of 13)	intron (NM_008465, intron 1 of 13)	1549.0	NM_008465	16646.0	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150965305-3	chr4	150964793	150965793	+	843.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-31804.0	NM_011910	24111.0	Mm.89984	NM_011910	ENSMUSG00000028963	Uts2	UII|Ucn2|prepro-UII	urotensin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-83689752-2	chr12	83689252	83690252	+	843.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008943, intron 1 of 11)	intron (NM_008943, intron 1 of 11)	1189.0	NM_008943	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78375886-2	chr11	78375386	78376386	+	843.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008238, intron 1 of 8)	intron (NM_008238, intron 1 of 8)	10722.0	NM_008238	15218.0	Mm.4496	NM_008238	ENSMUSG00000002057	Foxn1	D11Bhm185e|Fkh19|HFH-11|Hfh11|Whn|nu|nude	forkhead box N1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9560865-2	chr13	9560365	9561365	+	843.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 9 of 36)	intron (NM_001081426, intron 9 of 36)	202945.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-105763877-2	chr12	105763378	105764378	+	843.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030187, intron 13 of 17)	PB1D7|SINE|Alu	-20819.0	NM_011112	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	2.5	0.5	1.0	3.0	1.0	3.5
Merged-chr6-117871090-2	chr6	117870590	117871590	+	843.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001360938, exon 5 of 5)	5' UTR (NM_001360938, exon 5 of 5)	8209.0	NM_001001792	22685.0	Mm.249661	NM_008616	ENSMUSG00000042097	Zfp239	Mok-2|Mok2|Znf239	zinc finger protein 239	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160726848-2	chr2	160726348	160727348	+	843.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-4462.0	NM_021280	18803.0	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr15-61982354-2	chr15	61981854	61982854	+	843.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-2987.0	NM_001177354	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67539925-2	chr10	67539425	67540425	+	843.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010118, exon 2 of 2)	exon (NM_010118, exon 2 of 2)	1995.0	NM_001347458	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26538741-1	chr17	26538241	26539241	+	843.0	f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-22771.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	15.5	13.0	17.5	0.0	2.0	0.0
Merged-chr5-30913198-2	chr5	30912698	30913698	+	843.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133918)	promoter-TSS (NM_133918)	-588.0	NM_133918	100952.0	Mm.286375	NM_133918	ENSMUSG00000029163	Emilin1	5830419M17Rik|AW229038|BB105748|EMILIN-1|gp115	elastin microfibril interfacer 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-104273731-1	chr12	104273231	104274231	+	843.0	f0_balb.idr	Intergenic	Intergenic	10609.0	NM_001199940	628900.0	Mm.436602	NM_001199940	ENSMUSG00000079014	Serpina3i	2B2|EG628900|Gm6930	serine (or cysteine) peptidase inhibitor, clade A, member 3I	protein-coding	0.0	0.0	3.0	6.5	7.5	5.0
Merged-chr10-81231152-2	chr10	81230652	81231652	+	843.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178662)	promoter-TSS (NM_178662)	-373.0	NM_178662	16467.0	Mm.127681	NM_178662	ENSMUSG00000034958	Atcay	3322401A10Rik|BB077577|BNIP-H|CLAC|hes|ji	ataxia, cerebellar, Cayman type	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-115077536-4	chr13	115077033	115078033	+	843.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033228, intron 1 of 28)	intron (NM_001033228, intron 1 of 28)	12625.0	NM_134058	105083.0	Mm.486295	NM_134058	ENSMUSG00000042275	Pelo	AA409897|AI852218	pelota mRNA surveillance and ribosome rescue factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80899843-2	chr10	80899343	80900343	+	843.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081688)	TTS (NM_001081688)	1126.0	NM_013895	30055.0	Mm.142132	NM_013895	ENSMUSG00000020219	Timm13	D10Ertd378e|Tim9|Timm9	translocase of inner mitochondrial membrane 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-103388041-2	chr5	103387541	103388541	+	843.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR40a|LTR|ERVL	-37151.0	NM_011204	19249.0	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90479337-1	chr2	90478837	90479837	+	843.0	f1_balb.idr	promoter-TSS (NM_001135657)	promoter-TSS (NM_001135657)	-163.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	43.0	70.5	75.5	38.5	96.0	63.5
Merged-chr4-132756452-2	chr4	132755952	132756952	+	843.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133888, intron 1 of 7)	intron (NM_133888, intron 1 of 7)	719.0	NM_133888	100340.0	Mm.287187	NM_133888	ENSMUSG00000028885	Smpdl3b	1110054A24Rik|AU045240|Asml3b	sphingomyelin phosphodiesterase, acid-like 3B	protein-coding	2.0	8.5	11.0	2.0	11.5	11.0
Merged-chr18-82815890-4	chr18	82815377	82816377	+	843.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40020.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4145976-2	chr19	4145476	4146476	+	843.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_206973)	TTS (NM_206973)	-2687.0	NM_011778	23789.0	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-111079863-3	chr7	111079370	111080370	+	843.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013507, intron 4 of 21)	intron (NM_013507, intron 4 of 21)	3160.0	NM_001040131	13690.0	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66333685-2	chr7	66333185	66334185	+	843.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 3 of 33)	intron (NM_146191, intron 3 of 33)	48039.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87876422-3	chr6	87875900	87876900	+	843.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11540.0	NM_017477	54161.0	Mm.258785	NM_017477	ENSMUSG00000030058	Copg1	AU019265|BC056168|Copg|D6Ertd71e|D6Wsu16e	coatomer protein complex, subunit gamma 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150838012-5	chr2	150837427	150838427	+	842.956665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356549, intron 10 of 13)	intron (NM_001356549, intron 10 of 13)	4643.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90552600-3	chr2	90552115	90553115	+	842.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	L4_A_Mam|LINE|RTE-X	28032.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	14.0	44.0	35.0	36.5	58.5	33.5
Merged-chr7-125601238-3	chr7	125600736	125601736	+	842.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2193.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	194.5	247.0	251.0	89.5	189.0	124.0
Merged-chr1-170160742-3	chr1	170160250	170161250	+	842.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133806, intron 3 of 10)	intron (NM_133806, intron 3 of 10)	14214.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	1.0	9.5	10.0	0.5	9.5	1.0
Merged-chr12-79626376-3	chr12	79625862	79626862	+	842.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	MamRep137|DNA|TcMar-Tigger	298371.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108931643-4	chr12	108931142	108932142	+	842.9375	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	37370.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128496303-2	chr10	128495803	128496803	+	842.916626	f1_balb.idr|f1_c57bl6.idr	exon (NM_172259, exon 4 of 7)	exon (NM_172259, exon 4 of 7)	2382.0	NM_172259	216459.0	Mm.291688	NM_172259	ENSMUSG00000039824	Myl6b	5730437E04Rik|BC037527|MLC1SA	myosin, light polypeptide 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118925130-4	chr14	118924615	118925615	+	842.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360412)	promoter-TSS (NM_001360412)	355.0	NM_025943	66573.0	Mm.87456	NM_025943	ENSMUSG00000042156	Dzip1	2510025K24Rik|2810422M04Rik	DAZ interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128997725-2	chr2	128997225	128998225	+	842.916626	f1_balb.idr|f1_c57bl6.idr	exon (NM_178404, exon 4 of 12)	exon (NM_178404, exon 4 of 12)	30323.0	NM_178404	78751.0	Mm.26377	NM_178404	ENSMUSG00000042851	Zc3h6	4631426G04Rik|4833425H18Rik|AU024389|AW060453|Zc3hdc6|mKIAA2035	zinc finger CCCH type containing 6	protein-coding	3.5	3.5	6.5	0.0	0.5	0.5
Merged-chr4-88275654-4	chr4	88275167	88276167	+	842.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081184, intron 16 of 43)	intron (NM_001081184, intron 16 of 43)	153627.0	NR_030478	735282.0		NR_030478	ENSMUSG00000070077	Mir491	Mirn491|mir-491|mmu-mir-491	microRNA 491	ncRNA	5.0	7.0	5.5	3.5	14.5	9.5
Merged-chr15-12085021-3	chr15	12084546	12085546	+	842.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32805.0	NM_011767	22763.0	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27708173-4	chr17	27707708	27708708	+	842.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286743, intron 9 of 9)	intron (NM_001286743, intron 9 of 9)	20743.0	NM_013891	30051.0	Mm.26768	NM_013891	ENSMUSG00000024215	Spdef	PDEF|Pse	SAM pointed domain containing ets transcription factor	protein-coding	0.0	0.0	2.0	0.0	1.0	0.0
Merged-chr10-93051120-4	chr10	93050615	93051615	+	842.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347060, intron 5 of 67)	intron (NM_001347060, intron 5 of 67)	30481.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	11.0	4.0	5.5	3.0	4.5	4.5
Merged-chr8-119831624-5	chr8	119831115	119832115	+	842.8666380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	8964.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156839988-4	chr2	156839499	156840499	+	842.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173396)	promoter-TSS (NM_173396)	-8.0	NM_001291124	228839.0	Mm.315625	NM_173396	ENSMUSG00000062175	Tgif2	4921501K24|5730599O09Rik|C80753|C81206	TGFB-induced factor homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152914952-2	chr1	152914452	152915452	+	842.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12306.0	NM_001005507	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-86935850-2	chr5	86935350	86936350	+	842.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-9347.0	NM_152811	71773.0	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136422643-2	chr6	136422180	136423180	+	842.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7111.0	NM_001201390	100502936.0	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	8.5	1.5	0.0	0.0	7.0	5.0
Merged-chr16-62832644-4	chr16	62832144	62833144	+	842.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026577, intron 1 of 9)	intron (NM_026577, intron 1 of 9)	14396.0	NM_026577	68146.0	Mm.96833	NM_026577	ENSMUSG00000022911	Arl13b	A530097K21Rik|A930014M17Rik|Arl2l1|C530009C10Rik|hnn	ADP-ribosylation factor-like 13B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26781533-2	chr17	26781033	26782033	+	842.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_172149, intron 1 of 5)	intron (NM_172149, intron 1 of 5)	454.0	NM_172149	224630.0	Mm.21795	NM_172149	ENSMUSG00000024191	Bnip1	2010005M06Rik|5930429G21Rik|Sec20	BCL2/adenovirus E1B interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104353761-2	chr8	104353261	104354261	+	842.8333130000001	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153582, exon 4 of 4)	3' UTR (NM_153582, exon 4 of 4)	13167.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44852943-2	chr7	44852443	44853443	+	842.8333130000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_026270, exon 2 of 5)	exon (NM_026270, exon 2 of 5)	2936.0	NM_001253920	67605.0	Mm.148007	NM_026270	ENSMUSG00000011096	Akt1s1	1110012J22Rik|AI227026|Lobe|Lobel|PRAS40	AKT1 substrate 1 (proline-rich)	protein-coding	0.0	4.5	1.0	0.5	2.5	0.0
Merged-chr11-31784463-3	chr11	31783984	31784984	+	842.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	40063.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	0.0	4.5	1.0	0.0	9.0	4.0
Merged-chr15-27630010-4	chr15	27629507	27630507	+	842.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013792, intron 1 of 6)	(TG)n|Simple_repeat|Simple_repeat	686.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-75141104-3	chr1	75140571	75141571	+	842.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026977, intron 3 of 9)	intron (NM_026977, intron 3 of 9)	620.0	NM_001356264	69171.0	Mm.28193	NM_026977	ENSMUSG00000033159	Cnppd1	1810031K17Rik|AU043960	cyclin Pas1/PHO80 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-82840158-3	chr1	82839657	82840657	+	842.7999880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310713, intron 1 of 11)	CpG	697.0	NM_001347077	15463.0	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-61306712-4	chr3	61306208	61307208	+	842.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57799.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.0	1.5	2.5	0.0	1.5	2.5
Merged-chr9-13668978-4	chr9	13668490	13669490	+	842.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173776, intron 1 of 3)	intron (NM_173776, intron 1 of 3)	6530.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88775277-2	chr3	88774830	88775830	+	842.783325	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1727.0	NR_028359	100302730.0	Mm.482358	NR_028359		5830417I10Rik	3632445O20Rik|AA387005	gon-4-like pseudogene	pseudo	27.0	35.5	54.5	26.0	15.5	18.5
Merged-chr2-103439814-3	chr2	103439269	103440269	+	842.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010125, intron 3 of 6)	intron (NM_010125, intron 3 of 6)	15701.0	NM_010125	13711.0	Mm.20888	NM_010125	ENSMUSG00000027186	Elf5	ESE-2|ESE-5|ESE-5.	E74-like factor 5	protein-coding	7.0	6.5	2.0	5.0	6.0	8.0
Merged-chr15-58791510-6	chr15	58791029	58792029	+	842.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175212, intron 3 of 6)	intron (NM_175212, intron 3 of 6)	31898.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-85190173-3	chr10	85189661	85190661	+	842.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5107.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	2.5	0.0	0.5	5.0	0.0	4.0
Merged-chr14-17435613-4	chr14	17435121	17436121	+	842.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-225339.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3923815-3	chr19	3923296	3924296	+	842.7666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026316, exon 2 of 10)	exon (NM_026316, exon 2 of 10)	5920.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35440181-5	chr17	35439685	35440685	+	842.7666630000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198561, intron 3 of 4)	intron (NM_001198561, intron 3 of 4)	1018.0	NM_001201460	110558.0	Mm.431282	NM_001201460		H2-Q9	H-2Q9|Ped|Qa-2|Qa-9|Qa9	histocompatibility 2, Q region locus 9	protein-coding	0.0	0.0	3.0	0.0	0.0	0.0
Merged-chr14-73105577-4	chr14	73105067	73106067	+	842.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36943.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102163228-2	chr2	102162699	102163699	+	842.75	f0_balb.idr|f1_c57bl6.idr	intron (NM_178886, intron 1 of 5)	(CA)n|Simple_repeat|Simple_repeat	23261.0	NM_178886	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	3.5	1.5	0.0	0.0	0.0	0.0
Merged-chr19-21265975-2	chr19	21265473	21266473	+	842.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6305.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	1.0	1.0	2.0	0.0	0.0	2.0
Merged-chr13-58232807-4	chr13	58232291	58233291	+	842.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019832)	TTS (NM_019832)	-17138.0	NM_026842	56085.0	Mm.182053	NM_026842	ENSMUSG00000005312	Ubqln1	1110046H03Rik|1810030E05Rik|AU019746|C77538|D13Ertd372e|Da41|Dsk2|Plic-1|Plic1|Xdrp1	ubiquilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-28537126-2	chr2	28536626	28537626	+	842.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145836, intron 1 of 17)	B1_Mus1|SINE|Alu	3662.0	NM_001145836	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-28514675-4	chr2	28514159	28515159	+	842.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009058, intron 1 of 17)	intron (NM_009058, intron 1 of 17)	1492.0	NM_001145834	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129238432-4	chr6	129237945	129238945	+	842.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040265)	promoter-TSS (NR_040265)	37.0	NR_040266	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	21.0	40.0	49.5	23.5	50.5	31.0
Merged-chr14-45155865-4	chr14	45155365	45156365	+	842.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310534, intron 14 of 20)	MT2A|LTR|ERVL	63560.0	NM_172597	70561.0	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-93251955-6	chr15	93251419	93252419	+	842.7222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033275, intron 4 of 7)	intron (NM_001033275, intron 4 of 7)	23260.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128612847-4	chr10	128612373	128613373	+	842.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13633.0	NM_013765	27370.0	Mm.32118	NM_013765	ENSMUSG00000025362	Rps26	-	ribosomal protein S26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-53791821-4	chr1	53791324	53792324	+	842.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6609.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134266399-3	chr6	134265873	134266873	+	842.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007961, exon 8 of 8)	exon (NM_007961, exon 8 of 8)	-129956.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	3.5	4.0	0.0	3.0	3.5	3.0
Merged-chr17-48320348-3	chr17	48319804	48320804	+	842.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177083, intron 3 of 5)	intron (NM_177083, intron 3 of 5)	4142.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-75400885-3	chr1	75400403	75401403	+	842.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001173477, intron 1 of 4)	intron (NM_001173477, intron 1 of 4)	818.0	NM_001173477	11790.0	Mm.275397	NM_007463	ENSMUSG00000026207	Speg	AW125581|Apeg1|BPEG|D1Bwg1450e|SPEGalpha|SPEGbeta|mKIAA1297	SPEG complex locus	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25663519-1	chr2	25663019	25664019	+	842.6666869999999	f0_balb.idr	Intergenic	Intergenic	5567.0	NM_001042630	13863.0	Mm.12867	NM_007947	ENSMUSG00000026937	Lcn5	E-RABP|Erabp|MEP10	lipocalin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83067770-1	chr11	83067270	83068270	+	842.6666869999999	f0_balb.idr	intron (NM_011408, intron 1 of 1)	MTC|LTR|ERVL-MaLR	2658.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5485989-4	chr11	5485558	5486558	+	842.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34583.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	18.5	40.0	29.0	15.0	44.0	36.5
Merged-chr13-95893064-4	chr13	95892564	95893564	+	842.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1142.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0.0	11.5	5.0	5.0	11.0	12.0
Merged-chr17-34438740-2	chr17	34438231	34439231	+	842.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001177, intron 6 of 19)	intron (NM_001001177, intron 6 of 19)	37206.0	NM_030746	632126.0	Mm.484958	NM_030746	ENSMUSG00000058435	Btnl4	Btn3a3|EG632126|NG11	butyrophilin-like 4	protein-coding	1.5	0.0	2.0	0.0	5.0	0.0
Merged-chr12-3496292-2	chr12	3495792	3496792	+	842.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_172421, exon 10 of 11)	exon (NM_172421, exon 10 of 11)	69435.0	NM_172421	75302.0	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2, transcriptional regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116334464-2	chr11	116333948	116334948	+	842.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_008240, exon 2 of 3)	exon (NM_008240, exon 2 of 3)	906.0	NM_008240	15223.0	Mm.378938	NM_008240	ENSMUSG00000034227	Foxj1	FKHL-13|HFH-4|Hfh4	forkhead box J1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131073170-2	chr1	131072670	131073670	+	842.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	Tigger6b|DNA|TcMar-Tigger	24673.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	5.0	15.0	9.5	18.5	85.5	23.5
Merged-chr10-8353715-4	chr10	8353221	8354221	+	842.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 2 of 7)	intron (NM_177387, intron 2 of 7)	165104.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117093089-4	chr2	117092551	117093551	+	842.645874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28020.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112100852-3	chr13	112100365	112101365	+	842.644409	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-187586.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-74301376-4	chr13	74300903	74301903	+	842.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9072.0	NM_001317351	11624.0	Mm.290446	NM_009644	ENSMUSG00000021575	Ahrr	mKIAA1234	aryl-hydrocarbon receptor repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107825916-4	chr13	107825432	107826432	+	842.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	64132.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	40.5	57.0	32.5	26.5	50.0	37.5
Merged-chr18-75740771-4	chr18	75740267	75741267	+	842.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43071.0	NM_201354	269037.0	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	0.0	2.0	7.0	0.5	3.0	6.0
Merged-chr19-21384131-4	chr19	21383630	21384630	+	842.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	88531.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	8.5	8.5	4.0	7.5	1.0	3.5
Merged-chr5-113667569-4	chr5	113667074	113668074	+	842.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17184.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-63932895-3	chr15	63932388	63933388	+	842.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 11 of 11)	intron (NM_001360037, intron 11 of 11)	18427.0	NR_029414	74460.0	Mm.390801	NR_029414	ENSMUSG00000100127	Gsdmcl-ps	4933426G20Rik	gasdermin C-like, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117370569-5	chr8	117370071	117371071	+	842.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	21401.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103347396-4	chr15	103346882	103347882	+	842.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001314041, intron 28 of 30)	intron (NM_001314041, intron 28 of 30)	3143.0	NR_105928	102466775.0		NR_105928	ENSMUSG00000098419	Mir6963	Gm27724|mmu-mir-6963	microRNA 6963	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-5266621-4	chr5	5266113	5267113	+	842.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310448)	promoter-TSS (NM_001310448)	-545.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	1.0	4.0	0.0	0.0	6.0	0.0
Merged-chr9-114821864-3	chr9	114821295	114822295	+	842.5714109999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027294, intron 1 of 3)	intron (NM_027294, intron 1 of 3)	22357.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	4.0	10.0	10.5	3.0	1.0	4.5
Merged-chr5-136087038-4	chr5	136086487	136087487	+	842.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039103, intron 1 of 19)	PB1D7|SINE|Alu	3071.0	NM_001039103	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-57522435-3	chr11	57521959	57522959	+	842.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145426, intron 1 of 2)	intron (NM_145426, intron 1 of 2)	3794.0	NM_145426	216760.0	Mm.30501	NM_145426	ENSMUSG00000020522	Mfap3	2610509F16Rik|2700079M14Rik|AW536327	microfibrillar-associated protein 3	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr16-27457528-3	chr16	27457021	27458021	+	842.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	68565.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102702633-3	chr12	102702104	102703104	+	842.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	2265.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118797514-3	chr10	118797002	118798002	+	842.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71401.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67988870-3	chr18	67988375	67989375	+	842.5166630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	55702.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.0	0.0	3.5	0.0	2.0	3.5
Merged-chr19-45652164-2	chr19	45651664	45652664	+	842.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013907, intron 1 of 8)	intron (NM_013907, intron 1 of 8)	8029.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127379444-2	chr2	127378944	127379944	+	842.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16158.0	NM_009633	11552.0	Mm.347390	NM_009633	ENSMUSG00000058620	Adra2b	Adra-2b|[a]2B|a2b-AR|alpha2-C2|alpha2B	adrenergic receptor, alpha 2b	protein-coding	7.5	15.0	1.5	10.0	4.0	3.5
Merged-chr1-88233343-2	chr1	88232843	88233843	+	842.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001281466, exon 7 of 42)	exon (NM_001281466, exon 7 of 42)	6323.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118592520-2	chr9	118592020	118593020	+	842.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-14189.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27237523-2	chr2	27237023	27238023	+	842.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138665, intron 6 of 20)	intron (NM_138665, intron 6 of 20)	9780.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20202514-2	chr11	20202014	20203014	+	842.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 1 of 5)	intron (NM_008996, intron 1 of 5)	1102.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	0.5	27.5	8.0	5.5	10.0	8.0
Merged-chr13-113795879-2	chr13	113795379	113796379	+	842.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	1371.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-113446577-2	chr2	113446088	113447088	+	842.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 2 of 16)	intron (NM_001285459, intron 2 of 16)	5524.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.0	3.0	2.0	4.5	14.0	4.0
Merged-chr2-31767909-3	chr2	31767377	31768377	+	842.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	7704.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33755281-2	chr2	33754781	33755781	+	842.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 7 of 9)	intron (NM_175184, intron 7 of 9)	-50535.0	NR_045729	320482.0	Mm.442057	NR_045729	ENSMUSG00000086484	Nron	A630071L07Rik|Gm24353	non-protein coding RNA, repressor of NFAT	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-57799684-2	chr14	57799184	57800184	+	842.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009119, intron 2 of 3)	intron (NM_009119, intron 2 of 3)	1260.0	NR_037238	100526476.0		NR_037238	ENSMUSG00000092784	Mir3077	mir-3077|mmu-mir-3077	microRNA 3077	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-11178192-3	chr12	11177571	11178571	+	842.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26431.0	NR_131084	77442.0	Mm.159922	NR_131083	ENSMUSG00000112041	9530020I12Rik	-	RIKEN cDNA 9530020I12 gene	ncRNA	0.0	0.0	0.0	0.0	2.5	0.0
Merged-chr19-21564258-4	chr19	21563746	21564746	+	842.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88545.0	NM_025423	66206.0	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-100485712-2	chr3	100485212	100486212	+	842.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142952, intron 1 of 1)	intron (NM_001142952, intron 1 of 1)	3480.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12246636-2	chr15	12246136	12247136	+	842.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356498, intron 7 of 15)	intron (NM_001356498, intron 7 of 15)	41608.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-178402683-2	chr1	178402183	178403183	+	842.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-3335.0	NM_026626	68226.0	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135464314-2	chr5	135463814	135464814	+	842.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	-69768.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75922781-2	chr15	75922281	75923281	+	842.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1221.0	NM_025412	66194.0	Mm.250599	NM_025412	ENSMUSG00000022571	Pycrl	1110058B13Rik|2700073G24Rik|Pycr3	pyrroline-5-carboxylate reductase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78590204-2	chr15	78589704	78590704	+	842.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-6843.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	20.5	30.0	14.5	8.0	23.0	15.5
Merged-chr17-11607917-2	chr17	11607417	11608417	+	842.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016694, intron 6 of 11)	intron (NM_016694, intron 6 of 11)	275272.0	NR_045808	52027.0	Mm.442257	NR_045808		D17Ertd648e	-	DNA segment, Chr 17, ERATO Doi 648, expressed	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139288305-3	chr4	139287829	139288829	+	842.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009798, intron 8 of 8)	intron (NM_009798, intron 8 of 8)	22379.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	0.0	5.5	9.5	1.5	10.5	7.0
Merged-chr4-53104680-3	chr4	53104156	53105156	+	842.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 7 of 49)	intron (NM_013454, intron 7 of 49)	55239.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-57293557-2	chr1	57293058	57294058	+	842.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-78562.0	NR_037990	407809.0	Mm.134505	NR_037990	ENSMUSG00000101429	BC055402	-	cDNA sequence BC055402	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8839760-1	chr10	8839260	8840260	+	842.5	f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	RSINE1|SINE|B4	46310.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	2.5	4.5	7.0	9.0	4.5	5.0
Merged-chr5-130449247-2	chr5	130448747	130449747	+	842.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021371, exon 1 of 6)	5' UTR (NM_021371, exon 1 of 6)	455.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-60543484-2	chr19	60542984	60543984	+	842.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172097, intron 4 of 6)	B2_Mm2|SINE|B2	37539.0	NM_001172097	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	3.5	6.5	6.5	0.0	4.0	3.0
Merged-chr16-91855022-2	chr16	91854522	91855522	+	842.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 23 of 28)	intron (NM_001110275, intron 23 of 28)	76608.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-125282511-4	chr2	125281994	125282994	+	842.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34979.0	NM_023595	110074.0	Mm.282499	NM_023595	ENSMUSG00000027203	Dut	5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase	deoxyuridine triphosphatase	protein-coding	0.0	7.0	0.5	0.0	5.0	6.5
Merged-chr2-155135925-4	chr2	155135395	155136395	+	842.4583130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243712, intron 1 of 25)	URR1B|DNA|hAT-Charlie	2414.0	NM_008395	16396.0	Mm.208286	NM_008395	ENSMUSG00000027598	Itch	6720481N21Rik|8030492O04Rik|A130065M08|AIP4|C230047C07Rik	itchy, E3 ubiquitin protein ligase	protein-coding	48.5	174.0	95.0	67.0	203.0	122.5
Merged-chr7-55970520-5	chr7	55969966	55970966	+	842.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015495, intron 1 of 5)	B1_Mus1|SINE|Alu	7935.0	NR_015495	320845.0	Mm.274484	NM_001033396		A230056P14Rik	-	RIKEN cDNA A230056P14 gene	ncRNA	54.5	128.5	97.5	72.0	206.5	87.5
Merged-chr19-55740844-6	chr19	55740359	55741359	+	842.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331147)	promoter-TSS (NM_001331147)	-951.0	NM_001331147	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-60668488-3	chr1	60667982	60668982	+	842.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77906.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	0.0	6.5	6.5	0.0	11.5	12.0
Merged-chr7-34973239-3	chr7	34972732	34973732	+	842.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 9 of 14)	intron (NM_008820, intron 9 of 14)	60825.0	NM_008820	18624.0	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	4.5	0.0	0.5	1.5	6.0	0.5
Merged-chr3-138964066-3	chr3	138963567	138964567	+	842.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 5 of 13)	intron (NM_001356388, intron 5 of 13)	111134.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	0.0	15.0	6.0	0.0	15.0	6.0
Merged-chr9-49120176-4	chr9	49119665	49120665	+	842.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17386.0	NM_030709	80893.0	Mm.72799	NM_030709	ENSMUSG00000032268	Tmprss5	spinesin	transmembrane protease, serine 5 (spinesin)	protein-coding	0.0	11.0	4.5	0.5	2.0	1.5
Merged-chr6-32586425-4	chr6	32585948	32586948	+	842.429199	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 1 of 31)	intron (NM_175750, intron 1 of 31)	1744.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	3.0	3.0	5.0	2.0	1.0	4.5
Merged-chr14-45632897-4	chr14	45632392	45633392	+	842.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176845, intron 1 of 12)	MTD|LTR|ERVL-MaLR	25161.0	NR_039593	100628600.0		NR_039593	ENSMUSG00000093167	Mir5131	mmu-mir-5131|mu-mir-5131	microRNA 5131	ncRNA	10.5	38.0	29.5	4.0	7.0	2.5
Merged-chr11-69258596-4	chr11	69258154	69259154	+	842.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-21632.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3127200-2	chr11	3126681	3127681	+	842.400024	f0_c57.idr|f1_c57bl6.idr	intron (NR_003517, intron 2 of 6)	intron (NR_003517, intron 2 of 6)	3160.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83600074-4	chr7	83599521	83600521	+	842.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177695, exon 8 of 23)	exon (NM_177695, exon 8 of 23)	15090.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	0.0	2.0	7.0	0.0	0.0	1.5
Merged-chr11-44441430-3	chr11	44440935	44441935	+	842.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29113.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	25.0	24.5	37.0	5.5	10.5	1.5
Merged-chr17-87105984-3	chr17	87105466	87106466	+	842.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1713.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	12.5	25.5	12.0	10.5	34.0	26.5
Merged-chr1-138343553-3	chr1	138343026	138344026	+	842.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	69788.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32164128-4	chr16	32163623	32164623	+	842.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146069, intron 1 of 3)	intron (NM_146069, intron 1 of 3)	1471.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	47.0	99.0	106.5	45.0	102.5	105.0
Merged-chr10-81257996-4	chr10	81257428	81258428	+	842.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285853, intron 1 of 12)	intron (NM_001285853, intron 1 of 12)	629.0	NM_001285853	17179.0	Mm.2918	NM_010768	ENSMUSG00000004933	Matk	CHK|HYL|Ntk|p56ntk	megakaryocyte-associated tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83159636-4	chr6	83159118	83160118	+	842.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027948, intron 1 of 3)	B2_Mm2|SINE|B2	3214.0	NM_027948	71837.0	Mm.17621	NM_027948	ENSMUSG00000030030	1700003E16Rik	AU041756	RIKEN cDNA 1700003E16 gene	protein-coding	2.0	0.5	1.0	1.5	0.0	0.0
Merged-chr3-144580185-6	chr3	144579694	144580694	+	842.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053102, intron 2 of 4)	B1F1|SINE|Alu	9767.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110622827-4	chr9	110622308	110623308	+	842.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026012, intron 2 of 4)	intron (NM_026012, intron 2 of 4)	1585.0	NM_026012	67169.0	Mm.46680	NM_026012	ENSMUSG00000032491	Nradd	2610311B09Rik|BB104149|NRDD|NRH2|PLAIDD	neurotrophin receptor associated death domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-128106559-2	chr1	128106059	128107059	+	842.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_181750, intron 1 of 26)	intron (NM_181750, intron 1 of 26)	3253.0	NM_181750	226412.0	Mm.221041	NM_181750	ENSMUSG00000056211	R3hdm1	R3hdm	R3H domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36557311-2	chr18	36556736	36557736	+	842.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001271547)	TTS (NM_001271547)	-3367.0	NM_175375	108857.0	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr5-142702109-2	chr5	142701609	142702609	+	842.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146257)	promoter-TSS (NM_146257)	8.0	NM_146257	243328.0	Mm.125942	NM_146257	ENSMUSG00000050822	Slc29a4	ENT4|mPMAT	solute carrier family 29 (nucleoside transporters), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102459285-2	chr12	102458785	102459785	+	842.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9849.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	12.5	11.5	13.5	3.5	5.5	9.0
Merged-chr19-60892386-3	chr19	60891864	60892864	+	842.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	2615.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	5.5	6.5	7.0	1.0	0.5	1.0
Merged-chr19-3699943-3	chr19	3699448	3700448	+	842.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-8345.0	NM_001358256	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-116985070-3	chr13	116984571	116985571	+	842.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	RMER16|LTR|ERVK	40445.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0.0	16.5	5.0	5.5	26.5	12.0
Merged-chr14-93697867-4	chr14	93697391	93698391	+	842.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081377, intron 2 of 4)	intron (NM_001081377, intron 2 of 4)	192778.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	2.5	10.5	6.5	6.0	1.0	11.0
Merged-chr4-33239935-3	chr4	33239414	33240414	+	842.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8873.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-15746093-3	chr6	15745594	15746594	+	842.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	25433.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-16228302-3	chr2	16227792	16228792	+	842.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310455, intron 37 of 38)	intron (NM_001310455, intron 37 of 38)	-128012.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24546605-3	chr7	24546100	24547100	+	842.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037143)	promoter-TSS (NM_001037143)	-99.0	NM_009532	22594.0	Mm.4347	NM_009532	ENSMUSG00000051768	Xrcc1	Xrcc-1	X-ray repair complementing defective repair in Chinese hamster cells 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12318090-2	chr17	12317590	12318590	+	842.3333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045290)	promoter-TSS (NR_045290)	570.0	NM_011948	26407.0	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4528154-4	chr7	4527660	4528660	+	842.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033548, intron 4 of 11)	intron (NM_001033548, intron 4 of 11)	4282.0	NM_001033548	436022.0	Mm.425359	NM_001033548	ENSMUSG00000055809	Dnaaf3	6030429G01Rik|b2b1739Clo	dynein, axonemal assembly factor 3	protein-coding	8.0	15.5	5.5	1.0	7.5	1.0
Merged-chr14-17713245-4	chr14	17712749	17713749	+	842.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 1 of 9)	intron (NM_001113417, intron 1 of 9)	52289.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-81015990-4	chr17	81015545	81016545	+	842.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49040.0	NM_028138	72167.0	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51844107-4	chr14	51843593	51844593	+	842.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9675.0	NM_053111	93719.0	Mm.221324	NM_053111	ENSMUSG00000062148	Ear6	-	eosinophil-associated, ribonuclease A family, member 6	protein-coding	3.0	1.5	1.0	2.0	1.0	0.0
Merged-chr5-45534971-3	chr5	45534467	45535467	+	842.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021416, intron 12 of 15)	intron (NM_021416, intron 12 of 15)	14738.0	NM_025895	66999.0	Mm.283045	NM_025895	ENSMUSG00000015804	Med28	1500003D12Rik|AI451633|AU045690|Eg1|FKSG20|magicin	mediator complex subunit 28	protein-coding	0.5	0.0	0.0	1.5	0.0	0.0
Merged-chr5-101926861-2	chr5	101926361	101927361	+	842.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 17 of 66)	intron (NM_172882, intron 17 of 66)	143060.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34309952-3	chr17	34309495	34310495	+	842.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010382, intron 2 of 5)	B3A|SINE|B2	4128.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	4.5	72.5	29.5	8.5	22.0	6.0
Merged-chr19-10858909-2	chr19	10858409	10859409	+	842.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023044)	TTS (NM_023044)	10870.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20682113-2	chr18	20681613	20682613	+	842.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB7_2B-LTR_MM|LTR|ERVK	-16853.0	NR_155534	102633478.0		NR_155534	ENSMUSG00000085595	Gm16090	-	predicted gene 16090	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10860772-2	chr19	10860272	10861272	+	842.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_133804, intron 8 of 10)	intron (NM_133804, intron 8 of 10)	9007.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	0.5	5.0	2.0	0.5	5.0	2.0
Merged-chr3-65663488-2	chr3	65662988	65663988	+	842.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2740.0	NM_001037923	624866.0	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding	1.5	0.0	0.0	1.5	0.0	0.0
Merged-chr14-55758656-4	chr14	55758122	55759122	+	842.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009894)	promoter-TSS (NM_009894)	-198.0	NM_009894	12684.0	Mm.466766	NM_009894	ENSMUSG00000022219	Cideb	1110030C18Rik|AI790179|CIDE-B	cell death-inducing DNA fragmentation factor, alpha subunit-like effector B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-104032962-2	chr5	104032462	104033462	+	842.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11166.0	NM_053262	114664.0	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100583075-3	chr11	100582577	100583577	+	842.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019795, exon 14 of 14)	3' UTR (NM_019795, exon 14 of 14)	7186.0	NM_001146318	12799.0	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31047796-3	chr17	31047292	31048292	+	842.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-9902.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	42.5	45.5	38.5	28.0	53.5	55.5
Merged-chr12-32431279-3	chr12	32430794	32431794	+	842.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	52505.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	0.0	4.5	2.0	3.0	2.0	0.0
Merged-chr11-23667089-3	chr11	23666585	23667585	+	842.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028304, intron 1 of 17)	intron (NM_028304, intron 1 of 17)	1109.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165070498-3	chr2	165069979	165070979	+	842.211121	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027852, intron 7 of 7)	intron (NR_027852, intron 7 of 7)	14843.0	NM_011611	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	0.0	4.5	0.0	3.5	0.0	0.0
Merged-chr3-139074091-3	chr3	139073602	139074602	+	842.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 1 of 13)	intron (NM_001356388, intron 1 of 13)	1099.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	56.0	175.5	104.5	59.5	116.5	84.0
Merged-chr9-56636397-5	chr9	56635892	56636892	+	842.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311076)	promoter-TSS (NM_001311076)	-744.0	NM_001311076	235402.0	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-105716765-3	chr2	105716277	105717277	+	842.1889039999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023876, intron 9 of 9)	intron (NM_023876, intron 9 of 9)	34314.0	NM_001310145	18508.0	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	0.0	0.0	0.0	1.5	3.0	0.5
Merged-chr1-155532944-3	chr1	155532442	155533442	+	842.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5831.0	NR_132128	433367.0	Mm.359304	NR_132128	ENSMUSG00000073535	Gm5532	EG433367	predicted gene 5532	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120574743-3	chr2	120574243	120575243	+	842.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009222, intron 1 of 7)	intron (NM_009222, intron 1 of 7)	7072.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	14.5	54.0	22.5	20.5	34.0	23.0
Merged-chr15-79446011-4	chr15	79445510	79446510	+	842.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3867.0	NM_001359863	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	24.5	64.5	15.0	15.0	19.5	6.0
Merged-chr11-114989398-2	chr11	114988895	114989895	+	842.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145437, intron 1 of 3)	ID_B1|SINE|B4	491.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	159.0	322.0	214.0	79.5	215.5	155.5
Merged-chr6-127338589-4	chr6	127338091	127339091	+	842.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30624.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24910417-2	chr10	24909917	24910917	+	842.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105870)	promoter-TSS (NR_105870)	-247.0	NR_105870	102465545.0		NR_105870	ENSMUSG00000099181	Mir6905	Gm27879|mmu-mir-6905	microRNA 6905	ncRNA	6.0	28.0	10.0	1.0	7.5	3.5
Merged-chr5-122550639-4	chr5	122550149	122551149	+	842.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001358917, exon 19 of 19)	3' UTR (NM_001358917, exon 19 of 19)	-48424.0	NR_027838	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	50.5	70.5	31.0	22.0	76.0	62.5
Merged-chr19-4142837-2	chr19	4142337	4143337	+	842.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_206973, exon 2 of 2)	exon (NM_206973, exon 2 of 2)	3038.0	NM_206973	269053.0	Mm.131677	NM_206973	ENSMUSG00000044724	Gpr152	A930009H15Rik|Gm673	G protein-coupled receptor 152	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107722942-2	chr9	107722434	107723434	+	842.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12459.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	0.0	0.0	1.5	0.5	3.0	0.5
Merged-chr5-139536343-2	chr5	139535832	139536832	+	842.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_040701, intron 2 of 3)	intron (NR_040701, intron 2 of 3)	-7566.0	NM_013702	22255.0	Mm.42190	NM_013702	ENSMUSG00000029546	Uncx	Chx4|Uncx4.1	UNC homeobox	protein-coding	0.0	0.5	0.0	0.0	0.0	1.0
Merged-chr10-60341354-4	chr10	60340889	60341889	+	842.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 37 of 68)	MTEb|LTR|ERVL-MaLR	-5462.0	NM_001159572	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134083048-4	chr1	134082573	134083573	+	842.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3918.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-117553522-2	chr12	117553019	117554019	+	842.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 3 of 27)	intron (NM_175930, intron 3 of 27)	37040.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	2.0	3.0	5.0	0.0	4.0	3.5
Merged-chr7-19940023-4	chr7	19939505	19940505	+	842.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027308, intron 3 of 4)	RLTR26B_MM|LTR|ERVK	10738.0	NM_027308	70080.0	Mm.98583	NM_027308	ENSMUSG00000040498	Igsf23	2210010C17Rik	immunoglobulin superfamily, member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61211918-4	chr10	61211403	61212403	+	842.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081127, intron 14 of 21)	intron (NM_001081127, intron 14 of 21)	36641.0	NM_023064	65971.0	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96575710-4	chr3	96575220	96576220	+	842.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8919.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	34.0	112.0	79.0	61.0	86.0	84.0
Merged-chr2-52471690-4	chr2	52471183	52472183	+	842.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 4 of 13)	intron (NM_001037099, intron 4 of 13)	-46809.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34139834-3	chr10	34139372	34140372	+	842.116699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11900.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18892941-3	chr2	18892432	18893432	+	842.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 3 of 9)	intron (NM_008845, intron 3 of 9)	-91114.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148042218-3	chr4	148041711	148042711	+	842.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027809, intron 2 of 12)	intron (NR_027809, intron 2 of 12)	1022.0	NM_001161798	17769.0	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	methylenetetrahydrofolate reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-67657895-3	chr11	67657403	67658403	+	842.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109657, intron 5 of 13)	intron (NM_001109657, intron 5 of 13)	-37423.0	NM_009038	19674.0	Mm.439726	NM_009038	ENSMUSG00000020907	Rcvrn	CAR|S-modulin	recoverin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72022116-3	chr6	72021612	72022612	+	842.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046180, intron 1 of 2)	Lx3_Mus|LINE|L1	20416.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143731069-3	chr5	143730575	143731575	+	842.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029749, intron 1 of 17)	intron (NM_029749, intron 1 of 17)	1205.0	NM_029749	76800.0	Mm.259620	NM_029749	ENSMUSG00000051306	Usp42	2410140K03Rik|3110031A07Rik|A630018G05Rik|D5Ertd591e	ubiquitin specific peptidase 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120125008-4	chr7	120124514	120125514	+	842.1083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20277.0	NM_011775	22787.0	Mm.6510	NM_011775	ENSMUSG00000030911	Zp2	Zp-2	zona pellucida glycoprotein 2	protein-coding	0.5	0.5	10.0	0.0	18.5	0.0
Merged-chr2-127890782-4	chr2	127890290	127891290	+	842.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028765, intron 8 of 17)	intron (NM_028765, intron 8 of 17)	36162.0	NM_028765	74121.0	Mm.244835	NM_028765	ENSMUSG00000027380	Acoxl	1200014P05Rik|AV025673	acyl-Coenzyme A oxidase-like	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr7-68718259-2	chr7	68717759	68718759	+	842.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30979.0	NM_001042592	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73313288-4	chr2	73312790	73313790	+	842.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025854)	promoter-TSS (NM_025854)	638.0	NM_001355711	74616.0	Mm.247457	NM_029022	ENSMUSG00000008226	Scrn3	4833415E20Rik|AI427019|AV002033|Ses3	secernin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43790153-2	chr13	43789653	43790653	+	842.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	5041.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	96.5	153.0	64.5	8.0	35.0	55.5
Merged-chr19-42520036-4	chr19	42519533	42520533	+	842.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177464, intron 1 of 6)	B4|SINE|B4	1228.0	NM_177464	52013.0	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	7.0	13.0	16.0	1.0	15.5	19.0
Merged-chr9-75404919-4	chr9	75404445	75405445	+	842.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015806, intron 1 of 5)	MTD|LTR|ERVL-MaLR	4414.0	NM_027418	50772.0	Mm.480076	NM_015806	ENSMUSG00000042688	Mapk6	2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6	mitogen-activated protein kinase 6	protein-coding	2.0	0.0	7.5	0.0	3.5	2.0
Merged-chr6-47776498-2	chr6	47776000	47777000	+	842.0833130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12B|LTR|ERVK	-23575.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	0.0	4.5	1.0	0.0	4.5	3.0
Merged-chr5-88767888-2	chr5	88767388	88768388	+	842.0714109999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_007832, intron 1 of 6)	intron (NM_007832, intron 1 of 6)	2875.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146640795-4	chr6	146640314	146641314	+	842.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1765.0	NM_025315	108098.0	Mm.26212	NM_025315	ENSMUSG00000030291	Med21	0610007L03Rik|AI449604|D19234|D6Ertd782e|Srb7|Surb7	mediator complex subunit 21	protein-coding	4.5	21.0	15.0	8.5	13.5	12.0
Merged-chr14-45085358-4	chr14	45084863	45085863	+	842.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97252.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77371977-3	chr10	77371496	77372496	+	842.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024838, intron 1 of 11)	intron (NM_001024838, intron 1 of 11)	46277.0	NM_130895	110532.0	Mm.276815	NM_130895	ENSMUSG00000020262	Adarb1	1700057H01Rik|AW124433|AW558573|Adar2|BB220382|D10Bwg0447e|Red1	adenosine deaminase, RNA-specific, B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40236805-4	chr4	40236316	40237316	+	842.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172689, intron 1 of 17)	intron (NM_172689, intron 1 of 17)	3009.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10356273-3	chr16	10355763	10356763	+	842.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-24978.0	NR_126064	381033.0	Mm.263108	NR_126064	ENSMUSG00000116270	Gm1600	Gm1776	predicted gene 1600	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44454325-4	chr9	44453797	44454797	+	842.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009476, intron 1 of 4)	intron (NM_009476, intron 1 of 4)	470.0	NM_009476	22269.0	Mm.4453	NM_009476	ENSMUSG00000041523	Upk2	AW491716|UPII	uroplakin 2	protein-coding	6.5	0.5	6.0	0.0	0.0	0.0
Merged-chr7-132929939-4	chr7	132929431	132930431	+	842.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1211.0	NM_207302	360216.0	Mm.389984	NM_207302	ENSMUSG00000030967	Zranb1	9330160G10Rik|D7Wsu87e|Gm1956|Trabid	zinc finger, RAN-binding domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124804981-2	chr6	124804481	124805481	+	842.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3680.0	NM_001306051	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19523981-2	chr7	19523481	19524481	+	842.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027116, exon 4 of 4)	exon (NM_027116, exon 4 of 4)	5250.0	NM_027116	69547.0	Mm.77325	NM_027116	ENSMUSG00000060621	Nkpd1	2310015G09Rik	NTPase, KAP family P-loop domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167906489-2	chr2	167905989	167906989	+	842.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25838.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-135073838-1	chr6	135073338	135074338	+	842.0	f0_balb.idr	intron (NM_181444, intron 1 of 3)	intron (NM_181444, intron 1 of 3)	8176.0	NM_181444	232431.0	Mm.23575	NM_181444	ENSMUSG00000046733	Gprc5a	Rai3|Raig1	G protein-coupled receptor, family C, group 5, member A	protein-coding	5.0	0.0	3.0	6.0	1.5	2.0
Merged-chr5-139751272-2	chr5	139750801	139751801	+	842.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026748)	TTS (NM_026748)	-14968.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	0.0	5.5	0.0	0.0	0.0	0.5
Merged-chr13-119596463-4	chr13	119595948	119596948	+	842.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177666, intron 2 of 3)	intron (NM_001177666, intron 2 of 3)	-27371.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33753223-2	chr16	33752723	33753723	+	842.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 12 of 14)	intron (NM_175256, intron 12 of 14)	-40814.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87329428-2	chr3	87328905	87329905	+	842.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-28476.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	41.0	103.0	103.0	8.0	17.0	6.5
Merged-chr10-81185822-2	chr10	81185322	81186322	+	842.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190473, intron 2 of 8)	B1_Mus1|SINE|Alu	1904.0	NM_007828	13144.0	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144027693-2	chr3	144027193	144028193	+	842.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	174639.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156200042-3	chr2	156199541	156200541	+	842.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172674, intron 1 of 17)	intron (NM_172674, intron 1 of 17)	3394.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	47.5	39.0	58.0	20.5	39.5	19.0
Merged-chr7-19047346-2	chr7	19046846	19047846	+	842.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360713, intron 17 of 22)	intron (NM_001360713, intron 17 of 22)	-7341.0	NM_031255	83434.0	Mm.84435	NM_031255	ENSMUSG00000040866	Rsph6a	RSP4|Rshl1	radial spoke head 6 homolog A (Chlamydomonas)	protein-coding	2.0	0.0	0.0	2.0	0.0	0.0
Merged-chr7-55912319-2	chr7	55911784	55912784	+	842.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 22 of 30)	ORR1D2|LTR|ERVL-MaLR	50209.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	116.5	305.5	254.5	51.0	137.5	115.0
Merged-chr4-34080092-3	chr4	34079587	34080587	+	842.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	-30020.0	NM_026293	67652.0	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166758020-3	chr2	166757517	166758517	+	842.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35750.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98853000-2	chr15	98852500	98853500	+	842.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033276, exon 32 of 55)	exon (NM_001033276, exon 32 of 55)	18205.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143669991-2	chr5	143669491	143670491	+	842.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163548, intron 1 of 12)	intron (NM_001163548, intron 1 of 12)	18750.0	NM_001163548	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132538382-2	chr4	132537882	132538882	+	842.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172400, intron 2 of 8)	intron (NM_172400, intron 2 of 8)	2823.0	NM_172400	68598.0	Mm.29685	NM_172400	ENSMUSG00000054405	Dnajc8	1110021D09Rik|2010009J04Rik|AL024084|AU019262|AU044514	DnaJ heat shock protein family (Hsp40) member C8	protein-coding	6.5	7.5	4.0	3.5	0.0	4.0
Merged-chr11-114832745-2	chr11	114832245	114833245	+	842.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18787.0	NM_001110337	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44872082-2	chr7	44871582	44872582	+	842.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-2294.0	NM_133949	84113.0	Mm.42855	NM_133949	ENSMUSG00000038502	Ptov1	1110030G05Rik|AU041779|Gcap3	prostate tumor over expressed gene 1	protein-coding	3.5	4.5	1.0	7.0	0.0	0.0
Merged-chr6-122649699-1	chr6	122649199	122650199	+	842.0	f1_balb.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	23275.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	29.5	27.0	29.0	24.5	16.5	23.5
Merged-chr19-6098057-4	chr19	6097585	6098585	+	842.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001362427, exon 6 of 6)	3' UTR (NM_001362427, exon 6 of 6)	3666.0	NM_001362427	225852.0	Mm.301487	NM_001362427		Gm550	-	predicted gene 550	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91475910-3	chr2	91475416	91476416	+	842.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 8 of 37)	intron (NM_172668, intron 8 of 37)	18385.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	3.0	6.0	7.5	3.0	6.5	7.5
Merged-chr13-48965128-3	chr13	48964623	48965623	+	842.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033268, intron 1 of 17)	Tigger15a|DNA|TcMar-Tigger	2705.0	NM_001033268	218236.0	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-84661261-1	chr6	84660761	84661761	+	842.0	f0_balb.idr	intron (NM_177077, intron 20 of 21)	L1MD3|LINE|L1	-67353.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81055672-2	chr10	81055172	81056172	+	842.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358550, intron 1 of 11)	intron (NM_001358550, intron 1 of 11)	4504.0	NM_001358549	52551.0	Mm.30068	NM_024499	ENSMUSG00000004937	Sgta	5330427H01Rik|AI194281|D10Ertd190e|Sgt|Stg	small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10863699-2	chr19	10863199	10864199	+	842.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133804, intron 5 of 10)	intron (NM_133804, intron 5 of 10)	6080.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114925737-2	chr11	114925237	114926237	+	842.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347651, intron 3 of 3)	ORR1A2|LTR|ERVL-MaLR	8649.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-32933983-2	chr10	32933483	32934483	+	842.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-44068.0	NM_001025286	432450.0	Mm.49665	NM_001013411	ENSMUSG00000069670	Nkain2	6330571D19Rik|AW455467|Tcba1	Na+/K+ transporting ATPase interacting 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103402580-2	chr15	103402080	103403080	+	842.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028797, intron 8 of 8)	intron (NM_028797, intron 8 of 8)	27847.0	NM_028797	74174.0	Mm.325325	NM_028797	ENSMUSG00000022487	Gtsf1	1700006H03Rik|Cue110	gametocyte specific factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145247817-2	chr4	145247317	145248317	+	842.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011610)	promoter-TSS (NM_011610)	-947.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56167453-2	chr17	56166953	56167953	+	842.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025566, intron 1 of 1)	intron (NM_025566, intron 1 of 1)	4962.0	NM_025566	66443.0	Mm.2312	NM_025566	ENSMUSG00000044469	Tnfaip8l1	2600017J23Rik|TIPE1	tumor necrosis factor, alpha-induced protein 8-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34253801-2	chr10	34253301	34254301	+	842.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-28389.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-66395353-2	chr6	66394853	66395853	+	842.0	f0_balb.idr|f0_c57.idr	Intergenic	MLT2F|LTR|ERVL	122848.0	NR_136927	102633773.0	Mm.272086	NR_136927	ENSMUSG00000107653	Gm31520	-	sterol-C5-desaturase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-75744265-1	chr3	75743765	75744765	+	842.0	f0_balb.idr	Intergenic	Lx7|LINE|L1	-88534.0	NR_040539	69193.0	Mm.374088	NR_040539	ENSMUSG00000099370	Platr10	2410007B07Rik	pluripotency associated transcript 10	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5746822-2	chr17	5746322	5747322	+	842.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 8 of 8)	intron (NM_146073, intron 8 of 8)	-51835.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27425871-4	chr2	27425387	27426387	+	842.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009500, intron 1 of 27)	CpG	1721.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3438574-2	chr12	3438074	3439074	+	842.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270988, intron 1 of 11)	intron (NM_001270988, intron 1 of 11)	11717.0	NM_172421	75302.0	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2, transcriptional regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30411806-2	chr7	30411266	30412266	+	842.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2022.0	NM_011662	22177.0	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	37.5	60.5	43.0	19.5	32.5	18.5
Merged-chr11-75184706-1	chr11	75184206	75185206	+	842.0	f1_c57bl6.idr	intron (NM_144491, intron 3 of 12)	intron (NM_144491, intron 3 of 12)	5777.0	NM_144491	116905.0	Mm.41496	NM_144491	ENSMUSG00000078789	Dph1	2310011M22Rik|4930488F09Rik|AW551873|Dph2l1|Ovca1	diphthamide biosynthesis 1	protein-coding	1.5	6.0	0.5	5.0	0.0	0.0
Merged-chr6-129393412-1	chr6	129392912	129393912	+	842.0	f0_balb.idr	Intergenic	Intergenic	-3885.0	NM_001204253	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3649828-2	chr11	3649328	3650328	+	842.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001159288, exon 1 of 27)	5' UTR (NM_001159288, exon 1 of 27)	334.0	NM_001159288	74522.0	Mm.139127	NM_198162	ENSMUSG00000034543	Morc2a	8430403M08Rik|Zcwcc1	microrchidia 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23731124-1	chr13	23730624	23731624	+	842.0	f1_balb.idr	Intergenic	Intergenic	-7683.0	NM_015786	50708.0	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	32.0	30.5	32.0	18.5	16.5	12.0
Merged-chr14-40928712-3	chr14	40928176	40929176	+	841.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	19533.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-14328360-4	chr10	14327857	14328857	+	841.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	216679.0	NM_001002268	215798.0	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	0.0	7.5	1.0	0.0	0.0	1.5
Merged-chr18-74882465-6	chr18	74881890	74882890	+	841.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78873.0	NM_010720	16891.0	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding	0.0	0.0	0.0	0.0	1.5	0.0
Merged-chr6-134052060-4	chr6	134051552	134052552	+	841.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	16352.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	2.0	22.5	26.5	8.0	8.0	27.5
Merged-chr1-54910063-4	chr1	54909549	54910549	+	841.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	16338.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100345315-2	chr11	100344815	100345815	+	841.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	10813.0	NM_001359052	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-14632735-3	chr14	14632202	14633202	+	841.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70323.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	1.0	0.0	1.5	7.0	1.5	2.0
Merged-chr9-55390404-3	chr9	55389904	55390904	+	841.8777470000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172923, intron 3 of 10)	RCHARR1|DNA|hAT-Charlie	63491.0	NM_001357568	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-140174728-2	chr4	140174228	140175228	+	841.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_198610, intron 1 of 9)	B4|SINE|B4	31855.0	NR_153821	102636673.0	Mm.449180	NR_153821		Gm13029	Gm33676	predicted gene 13029	ncRNA	11.5	11.5	25.0	23.0	61.0	31.0
Merged-chr4-126030896-4	chr4	126030420	126031420	+	841.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252651, intron 4 of 14)	intron (NM_001252651, intron 4 of 14)	6261.0	NM_001252651	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46896194-2	chr8	46895694	46896694	+	841.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-90693.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64856505-2	chr5	64856005	64857005	+	841.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52982.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62877590-2	chr9	62877090	62878090	+	841.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-15566.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128334548-3	chr6	128334050	128335050	+	841.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011657, exon 3 of 11)	exon (NM_011657, exon 3 of 11)	21301.0	NM_011657	22158.0	Mm.291783	NM_011657	ENSMUSG00000001521	Tulp3	2310022L06Rik|AI316887	tubby-like protein 3	protein-coding	0.0	6.5	3.0	0.0	4.5	2.0
Merged-chr2-173186567-4	chr2	173186030	173187030	+	841.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32392.0	NM_021394	58203.0	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-28050232-4	chr3	28049748	28050748	+	841.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 11 of 25)	intron (NM_008875, intron 11 of 25)	66077.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128340497-4	chr10	128340001	128341001	+	841.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026444, intron 1 of 10)	B1_Mur4|SINE|Alu	2774.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-46066889-3	chr9	46066390	46067390	+	841.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	54070.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171262871-2	chr1	171262363	171263363	+	841.8333130000001	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172845)	TTS (NM_172845)	-7465.0	NM_020579	57370.0	Mm.274011	NM_020579	ENSMUSG00000052423	B4galt3	9530061M23Rik|AA104562|AW125175|ESTM26|ESTM6|R74981	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	protein-coding	14.0	23.0	4.5	0.5	0.0	2.5
Merged-chr10-10471292-4	chr10	10470800	10471800	+	841.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	1014.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	63.0	156.0	94.5	45.5	104.5	55.5
Merged-chr1-74395237-2	chr1	74394737	74395737	+	841.7999880000001	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029743)	TTS (NR_029743)	927.0	NR_029743	387219.0		NR_029743	ENSMUSG00000065468	Mir26b	Mirn26b|mir-26b|mmu-mir-26b	microRNA 26b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121592631-3	chr5	121592140	121593140	+	841.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009656, intron 1 of 12)	PB1D10|SINE|Alu	1184.0	NM_009656	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-80068945-4	chr9	80068425	80069425	+	841.758301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311110, intron 1 of 23)	intron (NM_001311110, intron 1 of 23)	2022.0	NM_146003	215351.0	Mm.28232	NM_146003	ENSMUSG00000034252	Senp6	2810017C20Rik|E130319N12Rik|Susp1|mKIAA0797	SUMO/sentrin specific peptidase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41356937-4	chr4	41356435	41357435	+	841.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355508, intron 1 of 6)	B4|SINE|B4	4972.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29823383-4	chr11	29822907	29823907	+	841.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_176829, exon 1 of 1)	3' UTR (NM_176829, exon 1 of 1)	2261.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	0.0	1.0	3.0	0.0	0.0	0.0
Merged-chr11-79529859-4	chr11	79529347	79530347	+	841.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033711, intron 1 of 1)	intron (NM_001033711, intron 1 of 1)	762.0	NM_146023	101488212.0	Mm.439665	NM_146023	ENSMUSG00000070354	Evi2	Evi2a-evi2b|Gm21975	ecotropic viral integration site 2	protein-coding	45.0	147.5	99.0	41.5	144.5	99.0
Merged-chr10-6715062-2	chr10	6714554	6715554	+	841.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43539.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	8.5	4.0	17.5	2.5	2.0	1.5
Merged-chr2-4560696-4	chr2	4560184	4561184	+	841.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 1 of 11)	intron (NM_001177844, intron 1 of 11)	930.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127889619-4	chr2	127889096	127890096	+	841.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028765, intron 8 of 17)	intron (NM_028765, intron 8 of 17)	34968.0	NM_028765	74121.0	Mm.244835	NM_028765	ENSMUSG00000027380	Acoxl	1200014P05Rik|AV025673	acyl-Coenzyme A oxidase-like	protein-coding	0.0	0.0	1.0	1.0	0.0	0.5
Merged-chr8-123048505-2	chr8	123048062	123049062	+	841.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5987.0	NR_045268	100503178.0	Mm.294938	NR_045268	ENSMUSG00000099881	2810013P06Rik	-	RIKEN cDNA 2810013P06 gene	ncRNA	0.0	1.0	1.0	1.5	1.0	0.0
Merged-chr5-77229170-4	chr5	77228681	77229681	+	841.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17710.0	NM_001289768	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167637717-2	chr2	167637217	167638217	+	841.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-5712.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75049998-2	chr11	75049498	75050498	+	841.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 12 of 18)	intron (NM_001002764, intron 12 of 18)	15993.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-105508615-3	chr10	105508163	105509163	+	841.744446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177368, intron 1 of 11)	intron (NM_177368, intron 1 of 11)	65816.0	NM_177368	278279.0	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	0.5	3.0	3.0	1.5	0.0	1.5
Merged-chr2-118373181-3	chr2	118372664	118373664	+	841.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_201367, exon 1 of 3)	exon (NM_201367, exon 1 of 3)	255.0	NM_201367	381413.0	Mm.70979	NM_201367	ENSMUSG00000040133	Gpr176	Gm1012	G protein-coupled receptor 176	protein-coding	4.0	1.5	0.0	2.5	0.0	0.0
Merged-chr4-48045949-4	chr4	48045452	48046452	+	841.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015743, intron 1 of 7)	intron (NM_015743, intron 1 of 7)	647.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123110880-3	chr8	123110427	123111427	+	841.694458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5952.0	NR_106047	102465654.0		NR_106047	ENSMUSG00000098550	Mir7079	Gm27278|mmu-mir-7079	microRNA 7079	ncRNA	6.0	0.0	2.0	3.0	0.0	1.0
Merged-chr9-102793100-3	chr9	102792651	102793651	+	841.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41769.0	NM_013649	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	1.5	4.5
Merged-chr8-116263559-3	chr8	116263060	116264060	+	841.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-241455.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87534378-3	chr6	87533890	87534890	+	841.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-1131.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	21.0	46.5	20.5	9.5	46.0	27.0
Merged-chr6-135951837-1	chr6	135951337	135952337	+	841.6666869999999	f0_c57.idr	intron (NM_008171, intron 4 of 14)	intron (NM_008171, intron 4 of 14)	221674.0	NM_008171	14812.0	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	3.0	1.0	6.5	3.0	13.5	2.0
Merged-chr11-106673118-5	chr11	106672615	106673615	+	841.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 12 of 14)	intron (NM_001305158, intron 12 of 14)	42166.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	1.0	22.0	6.5	3.0	5.5	9.0
Merged-chr12-24789901-3	chr12	24789385	24790385	+	841.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41714.0	NM_026037	67216.0	Mm.167671	NM_026037	ENSMUSG00000020646	Mboat2	2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2	membrane bound O-acyltransferase domain containing 2	protein-coding	6.0	0.0	1.5	6.0	1.0	4.0
Merged-chr18-11676802-3	chr18	11676311	11677311	+	841.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045527, intron 3 of 17)	PB1D9|SINE|Alu	19462.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	13.5	22.5	14.0	13.0	29.0	13.5
Merged-chr11-115250260-3	chr11	115249699	115250699	+	841.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010350, exon 15 of 15)	exon (NM_010350, exon 15 of 15)	17044.0	NM_010350	14813.0	Mm.39090	NM_010350	ENSMUSG00000020734	Grin2c	GluN2C|NMDAR2C|NR2C	glutamate receptor, ionotropic, NMDA2C (epsilon 3)	protein-coding	1.5	0.0	1.0	2.5	3.5	0.5
Merged-chr4-109360914-3	chr4	109360408	109361408	+	841.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007943, intron 13 of 24)	L2|LINE|L2	17852.0	NM_001159964	13858.0	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62908214-3	chr9	62907714	62908714	+	841.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 7 of 13)	intron (NM_019663, intron 7 of 13)	-46190.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57851339-4	chr6	57850824	57851824	+	841.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GAA)n|Simple_repeat|Simple_repeat	-6867.0	NM_134183	171201.0	Mm.377179	NM_134183	ENSMUSG00000115343	Vmn1r21	V1rc28	vomeronasal 1 receptor 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-68569762-2	chr13	68569276	68570276	+	841.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172480, intron 8 of 14)	intron (NM_172480, intron 8 of 14)	12328.0	NM_001308475	210009.0	Mm.205514	NM_172480	ENSMUSG00000034617	Mtrr	4732420G08|MSR	5-methyltetrahydrofolate-homocysteine methyltransferase reductase	protein-coding	2.0	1.5	0.5	3.0	0.0	1.5
Merged-chr19-55681460-4	chr19	55680961	55681961	+	841.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	MER58B|DNA|hAT-Charlie	20743.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0.5	7.0	10.0	5.5	10.5	10.0
Merged-chr15-86278720-4	chr15	86278204	86279204	+	841.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358062, intron 1 of 9)	intron (NM_001358062, intron 1 of 9)	1029.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52577833-4	chr2	52577314	52578314	+	841.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	-19203.0	NM_001285427	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45517024-2	chr7	45516524	45517524	+	841.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045555, intron 6 of 13)	B2_Mm1t|SINE|B2	2422.0	NM_001290998	56734.0	Mm.439742	NM_008807	ENSMUSG00000023467	Tulp2	Pdet	tubby-like protein 2	protein-coding	2.5	5.5	0.5	2.5	5.5	0.5
Merged-chr16-91561241-4	chr16	91560734	91561734	+	841.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008338, intron 5 of 6)	intron (NM_008338, intron 5 of 6)	14140.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	9.5	25.5	24.0	10.5	24.5	22.5
Merged-chr18-20651264-4	chr18	20650792	20651792	+	841.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155534, intron 1 of 2)	MTD|LTR|ERVL-MaLR	-13958.0	NM_013697	22139.0	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38655392-4	chr15	38654909	38655909	+	841.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6495.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37242996-3	chr9	37242500	37243500	+	841.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145960, intron 1 of 18)	intron (NM_001145960, intron 1 of 18)	12738.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71284437-3	chr8	71283945	71284945	+	841.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 1 of 39)	intron (NM_001142322, intron 1 of 39)	11731.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	3.5	3.5	11.5	2.5	9.0	7.5
Merged-chr2-122440750-4	chr2	122440260	122441260	+	841.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172980)	promoter-TSS (NM_172980)	-60.0	NM_172980	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	12.0	6.5	4.0	4.0	6.5	13.0
Merged-chr10-44752317-3	chr10	44751814	44752814	+	841.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-293566.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41337046-4	chr19	41336525	41337525	+	841.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	48045.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	74.0	118.0	94.0	30.0	121.0	91.0
Merged-chr11-29886779-2	chr11	29886282	29887282	+	841.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 5 of 41)	L1_Mus2|LINE|L1	-61114.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	13.5	3.0	1.0	1.5	12.5	3.5
Merged-chr19-5782327-2	chr19	5781827	5782827	+	841.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10908.0	NR_155264	78891.0	Mm.276063	NM_023912	ENSMUSG00000024941	Scyl1	2810011O19Rik|C85140|Ntkl|mdf|mfd|p105	SCY1-like 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-63376314-2	chr10	63375814	63376814	+	841.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-6129.0	NM_001253685	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-9157652-2	chr8	9157152	9158152	+	841.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12983.0	NR_073360	74688.0	Mm.159298	NR_073360	ENSMUSG00000109215	4930453L07Rik	-	RIKEN cDNA 4930453L07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-15195990-2	chr18	15195490	15196490	+	841.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44544.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116623319-4	chr11	116622800	116623800	+	841.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	952.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	38.5	145.0	98.0	60.5	166.5	86.5
Merged-chr19-14692355-4	chr19	14691853	14692853	+	841.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94170.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3450995-2	chr8	3450495	3451495	+	841.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133962, intron 14 of 19)	intron (NM_133962, intron 14 of 19)	16653.0	NM_026951	69129.0	Mm.45279	NM_026951	ENSMUSG00000069633	Pex11g	1810022F11Rik|1810049N02Rik|Pex11c|Pex11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-33309487-2	chr4	33308987	33309987	+	841.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011884)	promoter-TSS (NM_011884)	-824.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-37360798-4	chr3	37360292	37361292	+	841.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008006, intron 1 of 2)	intron (NM_008006, intron 1 of 2)	12139.0	NM_008006	14173.0	Mm.473689	NM_008006	ENSMUSG00000037225	Fgf2	Fgf-2|Fgfb|bFGF	fibroblast growth factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79088956-2	chr2	79088456	79089456	+	841.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-166470.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115275989-2	chr11	115275537	115276537	+	841.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007997, intron 2 of 11)	intron (NM_007997, intron 2 of 11)	932.0	NM_007997	14149.0	Mm.4719	NM_007997	ENSMUSG00000018861	Fdxr	AR	ferredoxin reductase	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr1-36571031-2	chr1	36570531	36571531	+	841.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-12650.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117303581-4	chr2	117303045	117304045	+	841.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 3 of 16)	intron (NM_011246, intron 3 of 16)	39332.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98845678-2	chr13	98845178	98846178	+	841.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 23 of 23)	intron (NM_178716, intron 23 of 23)	-30229.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28960932-2	chr7	28960432	28961432	+	841.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021895, intron 1 of 20)	intron (NM_021895, intron 1 of 20)	1400.0	NM_001360549	60595.0	Mm.81144	NM_021895	ENSMUSG00000054808	Actn4	C77391	actinin alpha 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106674057-2	chr11	106673557	106674557	+	841.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 12 of 14)	B4A|SINE|B4	41224.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17869959-2	chr10	17869459	17870459	+	841.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73740.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr4-133692048-2	chr4	133691548	133692548	+	841.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080819, intron 10 of 19)	B1_Mur1|SINE|Alu	-18882.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	4.5	7.0	6.5	9.0	3.5	6.5
Merged-chr12-85365635-2	chr12	85365135	85366135	+	841.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 1 of 4)	intron (NM_026775, intron 1 of 4)	9082.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140766725-2	chr5	140766225	140767225	+	841.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 2 of 3)	intron (NM_010302, intron 2 of 3)	42598.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107476952-2	chr11	107476452	107477452	+	841.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2576.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117598879-2	chr11	117598379	117599379	+	841.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12368.0	NR_015489	78403.0	Mm.212543	NR_015489		2900041M22Rik	-	RIKEN cDNA 2900041M22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-8988158-2	chr8	8987658	8988658	+	841.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	144130.0	NR_045854	71249.0	Mm.158635	NR_045854	ENSMUSG00000108848	4933430N04Rik	-	RIKEN cDNA 4933430N04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80296875-2	chr10	80296375	80297375	+	841.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	4366.0	NM_001310726	20054.0	Mm.643	NM_009091	ENSMUSG00000063457	Rps15	rig	ribosomal protein S15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59555008-2	chr15	59554508	59555508	+	841.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-93646.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-48774940-2	chr11	48774440	48775440	+	841.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25420.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145807443-2	chr2	145806943	145807943	+	841.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	21327.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-39770448-2	chr15	39769948	39770948	+	841.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022722, intron 9 of 9)	LTR16C|LTR|ERVL	24518.0	NM_001289508	75766.0	Mm.159563	NM_029422	ENSMUSG00000022303	Dcstamp	4833414I07Rik|DC-STAMP|FIND|Tm7sf4|mDC-STAMP	dendrocyte expressed seven transmembrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124834239-2	chr6	124833739	124834739	+	841.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013530)	TTS (NM_013530)	4063.0	NM_013538	14793.0	Mm.285723	NM_013538	ENSMUSG00000023505	Cdca3	2410005A12Rik|C8|Grcc8|Tome-1	cell division cycle associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17687375-2	chr12	17686875	17687875	+	841.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3434.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0.0	0.0	1.0	0.0	0.0	0.5
Merged-chr4-123591418-4	chr4	123590916	123591916	+	841.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 1 of 92)	MTC|LTR|ERVL-MaLR	-25004.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63088806-2	chr14	63088306	63089306	+	841.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33656.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21804279-2	chr14	21803779	21804779	+	841.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27282.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75193906-3	chr11	75193383	75194383	+	841.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177708)	promoter-TSS (NM_177708)	-110.0	NM_177708	237847.0	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	0.0	2.0	0.0	0.0	0.0	0.0
Merged-chr11-119927806-2	chr11	119927306	119928306	+	841.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 2)	B1_Mus2|SINE|Alu	13996.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191187128-2	chr1	191186628	191187628	+	841.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3795.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95173622-3	chr3	95173126	95174126	+	841.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_073549, exon 19 of 19)	non-coding (NR_073549, exon 19 of 19)	9287.0	NM_011351	20360.0	Mm.23662	NM_011351	ENSMUSG00000038777	Sema6c	Semay|mKIAA1869	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-43416050-4	chr8	43415528	43416528	+	841.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109019.0	NM_009556	22702.0	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-30499212-3	chr6	30498707	30499707	+	841.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347087, intron 5 of 13)	intron (NM_001347087, intron 5 of 13)	10566.0	NM_001347087	72649.0	Mm.45418	NM_178625	ENSMUSG00000029782	Tmem209	2700094F01Rik|AI428435	transmembrane protein 209	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133209566-4	chr4	133209058	133210058	+	841.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008154, exon 2 of 2)	3' UTR (NM_008154, exon 2 of 2)	2978.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	11.5	2.0	4.5	1.0	13.5	4.5
Merged-chr8-110231983-4	chr8	110231459	110232459	+	841.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13999.0	NM_146215	234728.0	Mm.275341	NM_146215	ENSMUSG00000046441	Cmtr2	AU022703|C730036L12Rik|Ftsjd1|MTr2	cap methyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132602816-4	chr2	132602305	132603305	+	841.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033469, intron 1 of 3)	MTD|LTR|ERVL-MaLR	4609.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90613179-4	chr2	90612671	90613671	+	841.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32524.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80932554-3	chr11	80932055	80933055	+	841.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034013, intron 3 of 9)	intron (NM_001034013, intron 3 of 9)	74166.0	NM_029367	75622.0	Mm.26988	NM_029367	ENSMUSG00000053184	Spaca3	1700025M08Rik|ALLP17|Lyc3|SLLP1|mSLLP1	sperm acrosome associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79804561-4	chr15	79804031	79805031	+	841.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030689, exon 1 of 5)	exon (NM_030689, exon 1 of 5)	178.0	NM_030689	73340.0	Mm.38438	NM_030689	ENSMUSG00000022421	Nptxr	1200009K17Rik|1700036C17Rik|5730406O18Rik|AI452369|AI785356|D15Bwg0580e|NPR|Npcd	neuronal pentraxin receptor	protein-coding	0.0	1.5	1.0	0.0	0.5	1.0
Merged-chr12-85575633-4	chr12	85575131	85576131	+	841.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23474.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-193876553-4	chr1	193876039	193877039	+	841.337524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	346220.0	NR_040477	74942.0	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35163348-4	chr9	35162799	35163799	+	841.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027030, intron 2 of 5)	intron (NM_027030, intron 2 of 5)	12688.0	NM_027030	69305.0	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	4.0	0.5	2.0	3.0	0.0	2.0
Merged-chr15-12404718-2	chr15	12404218	12405218	+	841.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081064, intron 9 of 23)	RSINE1|SINE|B4	83222.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181375375-2	chr2	181374875	181375875	+	841.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048148, intron 1 of 5)	intron (NM_001048148, intron 1 of 5)	-5860.0	NM_023684	72699.0	Mm.440138	NM_023684	ENSMUSG00000090077	Lime1	2810038K19Rik|LIME	Lck interacting transmembrane adaptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88828421-3	chr15	88827922	88828922	+	841.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8776.0	NM_029720	76737.0	Mm.292567	NM_029720	ENSMUSG00000023272	Creld2	5730592L21Rik|C85758	cysteine-rich with EGF-like domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79686983-3	chr11	79686489	79687489	+	841.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175543, intron 10 of 14)	intron (NM_175543, intron 10 of 14)	-11903.0	NR_045898	72218.0	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-106556713-4	chr3	106556258	106557258	+	841.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025582, intron 3 of 6)	Lx3A|LINE|L1	-8956.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	10.0	11.5	7.0	1.5	15.5	6.5
Merged-chr19-47168368-4	chr19	47167854	47168854	+	841.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10466.0	NM_021360	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	4.5	1.5	6.0	3.0	1.5	3.0
Merged-chr3-90271537-3	chr3	90270970	90271970	+	841.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356483, intron 11 of 27)	intron (NM_001356483, intron 11 of 27)	1321.0	NR_105979	102465612.0		NR_105979	ENSMUSG00000099199	Mir7012	Gm27370|mmu-mir-7012	microRNA 7012	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118691932-6	chr14	118691393	118692393	+	841.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163676, intron 1 of 29)	intron (NM_001163676, intron 1 of 29)	14326.0	NM_001163676	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22162811-2	chr16	22162311	22163311	+	841.3333130000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_183029, exon 1 of 16)	exon (NM_183029, exon 1 of 16)	488.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40611585-2	chr19	40611085	40612085	+	841.3333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304721)	promoter-TSS (NM_001304721)	630.0	NM_026260	67590.0	Mm.60758	NM_026260	ENSMUSG00000025008	Tctn3	4930521E07Rik|AI197391|Tect3	tectonic family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138840172-3	chr1	138839672	138840672	+	841.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025565, intron 1 of 4)	intron (NM_001025565, intron 1 of 4)	2272.0	NM_001042577	16876.0	Mm.250732	NM_010714	ENSMUSG00000019230	Lhx9	3110009O07Rik|BB104635|LH2B	LIM homeobox protein 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111412159-3	chr10	111411656	111412656	+	841.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61071.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-93701247-3	chr14	93700750	93701750	+	841.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081377, intron 2 of 4)	intron (NM_001081377, intron 2 of 4)	189419.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	24.0	44.5	37.0	5.0	9.0	5.0
Merged-chr16-56131833-2	chr16	56131333	56132333	+	841.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360073, intron 7 of 24)	B2_Mm2|SINE|B2	56353.0	NM_001304503	66315.0	Mm.255784	NM_025483	ENSMUSG00000052917	Senp7	2410152H17Rik|2810413I22Rik|2900036C23Rik|6030449K19Rik|AI790676	SUMO1/sentrin specific peptidase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44126263-4	chr9	44125765	44126765	+	841.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152189, intron 1 of 1)	intron (NR_152189, intron 1 of 1)	8220.0	NR_152189	100038560.0	Mm.429758	NR_152189		Gm10687	-	predicted gene 10687	ncRNA	0.0	0.0	0.5	0.0	3.0	1.5
Merged-chr1-32249778-4	chr1	32249264	32250264	+	841.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133235, intron 2 of 8)	Lx6|LINE|L1	77042.0	NM_133235	170771.0	Mm.336594	NM_133235	ENSMUSG00000026058	Khdrbs2	6330586C16Rik|Slim1|Slm-1|Slm1|TG-RP135|Tg(LRRK2*R1441G)135Cjli|mSLM-1	KH domain containing, RNA binding, signal transduction associated 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81086811-4	chr10	81086301	81087301	+	841.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145365, intron 8 of 11)	B4A|SINE|B4	12071.0	NM_145365	208677.0	Mm.294693	NM_145365	ENSMUSG00000035041	Creb3l3	BC010786|CREB-H|D10Bur1e	cAMP responsive element binding protein 3-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-32421264-3	chr3	32420758	32421758	+	841.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14893.0	NM_008839	18706.0	Mm.260521	NM_008839	ENSMUSG00000027665	Pik3ca	6330412C24Rik|caPI3K|p110|p110alpha	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-60521889-2	chr9	60521389	60522389	+	841.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-10854.0	NM_001040426	207596.0	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89322983-4	chr3	89322480	89323480	+	841.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010108)	promoter-TSS (NM_010108)	-101.0	NM_010108	13638.0	Mm.331159	NM_010108	ENSMUSG00000028039	Efna3	AW494418|EFL-2|Ehk1-L|Epl3|LERK-3	ephrin A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-70095205-4	chr10	70094728	70095728	+	841.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1893.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88178621-1	chr15	88178121	88179121	+	841.25	f0_balb.idr	Intergenic	Intergenic	-136253.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr5-140721008-3	chr5	140720510	140721510	+	841.244446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-3117.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-37759068-3	chr3	37758549	37759549	+	841.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34689.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17595860-3	chr6	17595353	17596353	+	841.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41157.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-61226021-6	chr19	61225557	61226557	+	841.2222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009970, intron 6 of 11)	CpG-7695	2361.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0.0	3.0	1.0	3.5	7.0	4.0
Merged-chr17-56132028-3	chr17	56131524	56132524	+	841.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130456, intron 3 of 16)	intron (NM_001130456, intron 3 of 16)	1828.0	NM_013662	20359.0	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85028829-4	chr8	85028310	85029310	+	841.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026760, intron 1 of 2)	intron (NM_026760, intron 1 of 2)	1977.0	NM_026760	68544.0	Mm.196005	NM_026760	ENSMUSG00000041203	Trir	1110002H14Rik|2310036O22Rik|AI854688	telomerase RNA component interacting RNase	protein-coding	4.0	7.5	7.0	1.5	6.5	8.0
Merged-chr16-91640384-4	chr16	91639899	91640899	+	841.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357351, intron 4 of 21)	intron (NM_001357351, intron 4 of 21)	6573.0	NM_010256	14450.0	Mm.4505	NM_010256	ENSMUSG00000022962	Gart	Gaps|Prgs	phosphoribosylglycinamide formyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123024781-3	chr5	123024297	123025297	+	841.2000119999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175423, intron 1 of 1)	B1_Mm|SINE|Alu	9723.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127210157-2	chr7	127209657	127210657	+	841.2000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347655, intron 1 of 6)	intron (NM_001347655, intron 1 of 6)	1258.0	NM_001347655	17907.0	Mm.14526	NM_016754	ENSMUSG00000030672	Mylpf	2410014J02Rik|MLC-2|Mlc2	myosin light chain, phosphorylatable, fast skeletal muscle	protein-coding	6.0	15.0	8.5	3.0	13.5	19.0
Merged-chr12-119110298-2	chr12	119109798	119110798	+	841.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	127978.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82993166-2	chr15	82992666	82993666	+	841.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29972.0	NM_028728	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80261355-2	chr15	80260855	80261855	+	841.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_175109, exon 3 of 4)	exon (NM_175109, exon 3 of 4)	2951.0	NM_175109	66538.0	Mm.39485	NM_175109	ENSMUSG00000051518	Rps19bp1	2510038A11Rik|AI604923|S19BP	ribosomal protein S19 binding protein 1	protein-coding	1.5	2.0	1.0	1.5	0.0	1.0
Merged-chr2-163720015-2	chr2	163719515	163720515	+	841.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 3 of 4)	intron (NM_001039390, intron 3 of 4)	25978.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25466465-3	chr14	25465927	25466927	+	841.1555789999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	7242.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr15-102100380-3	chr15	102099876	102100876	+	841.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2558.0	NM_001355636	209039.0	Mm.29389	NM_153533	ENSMUSG00000037003	Tns2	C1-ten|Tenc1|nep|nph	tensin 2	protein-coding	0.0	0.0	3.0	0.0	2.5	0.0
Merged-chr7-4924311-6	chr7	4923847	4924847	+	841.138916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_201355, exon 3 of 3)	exon (NM_201355, exon 3 of 3)	1467.0	NM_001358883	269854.0	Mm.42652	NM_201355	ENSMUSG00000035285	Nat14	BC047219	N-acetyltransferase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-78204968-4	chr16	78204436	78205436	+	841.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TA)n|Simple_repeat|Simple_repeat	50518.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-151233690-4	chr5	151233162	151234162	+	841.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-43469.0	NR_153382	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38506245-3	chr16	38505741	38506741	+	841.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024273, intron 4 of 6)	intron (NM_024273, intron 4 of 6)	16422.0	NM_024273	76916.0	Mm.132231	NM_024273	ENSMUSG00000002846	Timmdc1	2810021C21Rik|4930455C21Rik|AV135763	translocase of inner mitochondrial membrane domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-83706107-3	chr12	83705596	83706596	+	841.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362271, intron 3 of 11)	intron (NM_001362271, intron 3 of 11)	17533.0	NM_008943	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152729752-5	chr2	152729245	152730245	+	841.099976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6506.0	NM_010495	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	10.0	28.5	22.5	6.5	9.0	5.0
Merged-chr17-84340780-4	chr17	84340317	84341317	+	841.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 26 of 37)	intron (NM_183021, intron 26 of 37)	125391.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99602940-4	chr5	99602446	99603446	+	841.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	126114.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr11-79703655-4	chr11	79703136	79704136	+	841.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8333.0	NR_029579	387188.0		NR_029579	ENSMUSG00000065395	Mir193a	Mir193|Mirn193|mir-193a|mmu-mir-193|mmu-mir-193a	microRNA 193a	ncRNA	1.5	12.5	12.0	4.5	3.5	4.0
Merged-chr2-156421687-4	chr2	156421191	156422191	+	841.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013510, intron 1 of 21)	intron (NM_013510, intron 1 of 21)	782.0	NM_001291123	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	21.0	11.0	15.0	16.5	4.0	15.5
Merged-chr2-167717891-3	chr2	167717409	167718409	+	841.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26732.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-87444653-3	chr12	87444142	87445142	+	841.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013372)	promoter-TSS (NM_001013372)	-625.0	NM_001013372	654309.0	Mm.442579	NM_001013372	ENSMUSG00000079036	Nrp	-	neural regeneration protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98108477-4	chr15	98107993	98108993	+	841.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163487)	promoter-TSS (NM_001163487)	22.0	NM_001163487	18642.0	Mm.272582	NM_021514	ENSMUSG00000033065	Pfkm	AI131669|ATP-PFK|PFK-A|PFK-M|Pfk-4|Pfk4|Pfka|Pfkx	phosphofructokinase, muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127579829-6	chr10	127579204	127580204	+	841.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 20 of 88)	intron (NM_008512, intron 20 of 88)	41444.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-116202883-3	chr12	116202409	116203409	+	841.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60116.0	NM_146039	217935.0	Mm.31382	NM_146039	ENSMUSG00000042050	Wdr60	D430033N04Rik	WD repeat domain 60	protein-coding	12.5	10.0	1.0	3.0	2.0	0.5
Merged-chr14-54383943-1	chr14	54383443	54384443	+	841.0	f0_balb.idr	intron (NM_011405, intron 4 of 11)	B4A|SINE|B4	23102.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	3.0	11.5	17.5	10.0	36.0	31.5
Merged-chr5-98692225-1	chr5	98691725	98692725	+	841.0	f0_balb.idr	intron (NM_001024614, intron 3 of 5)	MLT1C|LTR|ERVL-MaLR	-162190.0	NM_173404	110075.0	Mm.136461	NM_173404	ENSMUSG00000029335	Bmp3	9530029I04Rik	bone morphogenetic protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97831981-2	chr11	97831390	97832390	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010688, intron 4 of 6)	intron (NM_010688, intron 4 of 6)	-8890.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	0.0	12.0	4.0	0.0	3.0	4.0
Merged-chr11-82719542-2	chr11	82719042	82720042	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009839, intron 13 of 13)	intron (NM_009839, intron 13 of 13)	44779.0	NM_009839	12467.0	Mm.4126	NM_009839	ENSMUSG00000020698	Cct6b	CCT-zeta-2|CCTzeta-2|Cctz-2|TCP-1-zeta-2	chaperonin containing Tcp1, subunit 6b (zeta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119185851-2	chr13	119185351	119186351	+	841.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	223160.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	7.5	12.0	2.0	0.0	0.0	1.0
Merged-chr2-26975163-2	chr2	26974663	26975663	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001322, intron 2 of 28)	intron (NM_001001322, intron 2 of 28)	1747.0	NM_001290465	279028.0	Mm.330084	NM_001001322	ENSMUSG00000014852	Adamts13	ADAM-TS13|ADAMTS-13|Gm710|vWF-CP	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60830908-2	chr10	60830408	60831408	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029770, intron 1 of 16)	CpG	673.0	NM_029770	107449.0	Mm.290433	NM_029770	ENSMUSG00000020099	Unc5b	6330415E02Rik|A630020F16|D10Bwg0792e|Unc5h2	unc-5 netrin receptor B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-73093547-2	chr9	73093047	73094047	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301230, intron 6 of 6)	intron (NM_001301230, intron 6 of 6)	-8851.0	NM_025890	66991.0	Mm.471745	NM_025890	ENSMUSG00000092622	Khdc3	2410004A20Rik|AI467128|FILIA|OEEP48	KH domain containing 3, subcortical maternal complex member	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61089683-2	chr18	61089183	61090183	+	841.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15889.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4240530-2	chr12	4240030	4241030	+	841.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001204912)	TTS (NM_001204912)	6503.0	NM_001204912	69709.0	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54879859-1	chr12	54879359	54880359	+	841.0	f1_balb.idr	Intergenic	MER119|DNA|hAT-Charlie	-16982.0	NM_007688	12632.0	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	1.0	6.5	1.0	2.0	3.5	4.5
Merged-chr4-58585560-4	chr4	58585075	58586075	+	841.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32084.0	NM_010336	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57895023-2	chr15	57894534	57895534	+	841.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-2616.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95634910-2	chr3	95634410	95635410	+	841.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9930.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	10.0	12.0	14.5	11.0	38.0	14.0
Merged-chr7-135631969-4	chr7	135631481	135632481	+	841.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316679, intron 1 of 19)	intron (NM_001316679, intron 1 of 19)	-19918.0	NM_001316681	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-104976018-1	chr13	104975518	104976518	+	841.0	f0_balb.idr	intron (NM_029879, intron 3 of 5)	intron (NM_029879, intron 3 of 5)	78912.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70848186-2	chr9	70847686	70848686	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	86622.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35272509-2	chr9	35272003	35273003	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028040, intron 3 of 6)	intron (NM_028040, intron 3 of 6)	4622.0	NM_028040	71989.0	Mm.273515	NM_028040	ENSMUSG00000032044	Rpusd4	2410001E19Rik	RNA pseudouridylate synthase domain containing 4	protein-coding	0.0	0.0	0.0	0.0	5.0	0.5
Merged-chr6-31183285-2	chr6	31182785	31183785	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 1 of 2)	intron (NR_110470, intron 1 of 2)	35189.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61679632-2	chr10	61679132	61680132	+	841.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358488)	promoter-TSS (NM_001358488)	-653.0	NM_001358488	20224.0	Mm.391794	NM_009120	ENSMUSG00000020088	Sar1a	1600019H17Rik|Sara|Sara1	secretion associated Ras related GTPase 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34520548-2	chr5	34520048	34521048	+	841.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5236.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-39484588-1	chr7	39484088	39485088	+	841.0	f0_c57.idr	Intergenic	B2_Mm2|SINE|B2	-33178.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	4.0	10.5	2.5	3.5	2.5	3.0
Merged-chr8-71344482-1	chr8	71343982	71344982	+	841.0	f1_balb.idr	intron (NM_001142322, intron 19 of 39)	RSINE1|SINE|B4	-22366.0	NM_001145780	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	0.5	1.0	0.0	0.5	0.0	0.0
Merged-chr13-93304804-1	chr13	93304304	93305304	+	841.0	f1_c57bl6.idr	5' UTR (NM_001284189, exon 1 of 9)	5' UTR (NM_001284189, exon 1 of 9)	1047.0	NM_011982	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	1.5	19.5	9.5	5.5	9.0	4.0
Merged-chr2-91981502-1	chr2	91981002	91982002	+	841.0	f1_balb.idr	TTS (NM_011957)	TTS (NM_011957)	-17939.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0.0	5.0	6.5	0.0	5.0	1.0
Merged-chr17-43259588-2	chr17	43259088	43260088	+	841.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	-10759.0	NM_133776	77596.0	Mm.159950	NM_133776	ENSMUSG00000041293	Adgrf1	5031409J19Rik|Gpr110|KPG_009	adhesion G protein-coupled receptor F1	protein-coding	0.0	1.5	0.5	0.0	0.5	0.0
Merged-chr8-20517841-2	chr8	20517341	20518341	+	841.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-93027.0	NR_028428	381598.0	Mm.359054	NM_001024708	ENSMUSG00000071793	2610005L07Rik	2810038F24Rik|6720476A01Rik	cadherin 11 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-98295626-2	chr9	98295126	98296126	+	841.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357446)	promoter-TSS (NM_001357446)	-944.0	NM_001357445	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79891664-2	chr10	79891164	79892164	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013459, intron 2 of 4)	intron (NM_013459, intron 2 of 4)	811.0	NM_001291915	11537.0	Mm.4407	NM_013459	ENSMUSG00000061780	Cfd	Adn|DF	complement factor D (adipsin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79907763-2	chr10	79907218	79908218	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198107, intron 1 of 14)	intron (NM_198107, intron 1 of 14)	1220.0	NM_001163276	216154.0	Mm.260089	NM_198107	ENSMUSG00000013833	Med16	95kDa|A630083L04|DRIP92|Thrap5|Trap95	mediator complex subunit 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96145786-2	chr11	96145286	96146286	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172799, intron 8 of 14)	intron (NM_172799, intron 8 of 14)	12000.0	NM_172799	237930.0	Mm.249912	NM_172799	ENSMUSG00000038756	Ttll6	4932418K24Rik|D11Moh43e|D11Moh44e|t8130b59	tubulin tyrosine ligase-like family, member 6	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr16-4932053-2	chr16	4931553	4932553	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 15 of 17)	intron (NM_001357062, intron 15 of 17)	-7058.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23823843-2	chr11	23823343	23824343	+	841.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52873.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-41035470-2	chr14	41034970	41035970	+	841.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-21637.0	NM_001316737	70564.0	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26912355-2	chr2	26911855	26912855	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013721, intron 4 of 7)	intron (NM_013721, intron 4 of 7)	1548.0	NM_013721	27176.0	Mm.328601	NM_013721	ENSMUSG00000062647	Rpl7a	Surf3	ribosomal protein L7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119141275-2	chr4	119140770	119141770	+	841.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32525.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	9.0	2.5	2.5	0.0	0.0	2.0
Merged-chr1-132417802-1	chr1	132417302	132418302	+	841.0	f1_c57bl6.idr	exon (NM_172516, exon 1 of 13)	exon (NM_172516, exon 1 of 13)	349.0	NM_172516	213452.0	Mm.257120	NM_172516	ENSMUSG00000042046	Dstyk	A930019K20Rik|C430014H23Rik|C820013G01|Ripk5	dual serine/threonine and tyrosine protein kinase	protein-coding	5.0	12.0	7.0	0.5	16.5	10.5
Merged-chr10-78352913-2	chr10	78352413	78353413	+	841.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1213.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59544697-2	chr11	59544197	59545197	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 2 of 9)	B2_Mm1t|SINE|B2	2011.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80198962-2	chr18	80198586	80199586	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199197, intron 1 of 5)	L1MD3|LINE|L1	1533.0	NM_199197	68731.0	Mm.186936	NM_199197	ENSMUSG00000024570	Rbfa	1110032A13Rik|AI595940	ribosome binding factor A	protein-coding	3.0	5.5	0.0	4.0	0.0	1.0
Merged-chr6-28424973-2	chr6	28424473	28425473	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007480, intron 3 of 5)	intron (NM_007480, intron 3 of 5)	1369.0	NM_007480	11844.0	Mm.389075	NM_007480	ENSMUSG00000020440	Arf5	-	ADP-ribosylation factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124742339-2	chr6	124741839	124742839	+	841.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007881)	TTS (NM_007881)	-1260.0	NM_013535	14790.0	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103366118-1	chr15	103365618	103366618	+	841.0	f0_balb.idr	intron (NM_001314041, intron 1 of 30)	CpG	673.0	NM_010577	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120687467-2	chr11	120686967	120687967	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026877, intron 5 of 15)	intron (NM_026877, intron 5 of 15)	10806.0	NM_001164224	68938.0	Mm.294020	NM_026877	ENSMUSG00000025142	Aspscr1	1190006K01Rik|ASPC|ASPCR1|ASPL|ASPS|RCC17|TUG	alveolar soft part sarcoma chromosome region, candidate 1 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-35043191-2	chr6	35042691	35043691	+	841.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164411, exon 11 of 11)	3' UTR (NM_001164411, exon 11 of 11)	-65192.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97790295-4	chr15	97789840	97790840	+	841.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026353, intron 2 of 2)	intron (NM_026353, intron 2 of 2)	5975.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81828952-1	chr7	81828452	81829452	+	841.0	f0_balb.idr	intron (NM_146193, intron 1 of 7)	CpG	479.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92706666-2	chr16	92706166	92707166	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-9337.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40723835-1	chr19	40723335	40724335	+	841.0	f1_balb.idr	intron (NM_001304721, intron 4 of 9)	L2a|LINE|L2	64065.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	7.0	2.0	5.5	4.5	23.0	3.5
Merged-chr4-109668260-1	chr4	109667760	109668760	+	841.0	f1_c57bl6.idr	Intergenic	Intergenic	-1504.0	NM_001301368	12580.0	Mm.1912	NM_007671	ENSMUSG00000028551	Cdkn2c	C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c	cyclin dependent kinase inhibitor 2C	protein-coding	5.0	6.0	2.0	3.5	0.0	6.5
Merged-chr14-122297052-1	chr14	122296552	122297552	+	841.0	f0_balb.idr	intron (NM_029556, intron 1 of 7)	intron (NM_029556, intron 1 of 7)	-63414.0	NR_015532	68245.0	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29080892-2	chr17	29080392	29081392	+	841.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1766.0	NR_036469	100504267.0	Mm.438550	NR_036469	ENSMUSG00000085912	Trp53cor1	Gm16197|linc-p21|lincRNA-p21	tumor protein p53 pathway corepressor 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-87077986-4	chr15	87077472	87078472	+	840.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-466327.0	NM_001252310	106014.0	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	0.0	1.5	0.0	8.5	1.5	0.0
Merged-chr17-84182767-6	chr17	84182127	84183127	+	840.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5320.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121937833-4	chr14	121937354	121938354	+	840.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 4 of 8)	intron (NM_026861, intron 4 of 8)	-22080.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	46.0	100.5	49.5	44.0	107.0	46.0
Merged-chr15-63606117-3	chr15	63605585	63606585	+	840.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126477.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-63985910-4	chr15	63985461	63986461	+	840.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144846, intron 1 of 11)	intron (NM_144846, intron 1 of 11)	12105.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20329864-4	chr11	20329344	20330344	+	840.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018861, intron 1 of 7)	intron (NM_018861, intron 1 of 7)	2869.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-80753507-4	chr8	80753012	80754012	+	840.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14053.0	NM_053124	93762.0	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100795715-4	chr13	100795205	100796205	+	840.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-9219.0	NM_172301	268697.0	Mm.260114	NM_172301	ENSMUSG00000041431	Ccnb1	Ccnb1-rs1|Ccnb1-rs13|CycB1|Cycb-4|Cycb-5|Cycb1-rs1	cyclin B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91576106-3	chr6	91575597	91576597	+	840.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60062.0	NM_026309	67678.0	Mm.246693	NM_026309	ENSMUSG00000034192	Lsm3	1010001J12Rik|2610005D18Rik|6030401D18Rik|SMX4|USS2	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114869584-3	chr6	114869141	114870141	+	840.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 3 of 5)	intron (NM_001356371, intron 3 of 5)	52180.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3461136-3	chr8	3460627	3461627	+	840.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026951, intron 3 of 4)	B1_Mur1|SINE|Alu	6521.0	NM_026951	69129.0	Mm.45279	NM_026951	ENSMUSG00000069633	Pex11g	1810022F11Rik|1810049N02Rik|Pex11c|Pex11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding	0.0	4.0	1.5	0.0	0.0	0.5
Merged-chr3-8245376-4	chr3	8244880	8245880	+	840.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	217718.0	NR_033512	620966.0	Mm.301719	NR_033512		Gm6194	1700003N22Rik|EG620966	transmembrane protein 189 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76700792-4	chr15	76700282	76701282	+	840.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027122)	promoter-TSS (NM_027122)	-760.0	NM_027122	69572.0	Mm.34920	NM_027122	ENSMUSG00000019080	Mfsd3	2310010G13Rik	major facilitator superfamily domain containing 3	protein-coding	6.5	29.0	23.0	0.0	2.0	0.5
Merged-chr11-115718025-6	chr11	115717573	115718573	+	840.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9476.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58272326-3	chr9	58271755	58272755	+	840.857117	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	19091.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142374255-2	chr7	142373755	142374755	+	840.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347541)	promoter-TSS (NM_001347541)	-509.0	NM_001347541	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	1.0	10.0	7.0	0.5	4.0	4.0
Merged-chr5-33223018-2	chr5	33222518	33223518	+	840.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-4780.0	NM_133903	100689.0	Mm.34694	NM_133903	ENSMUSG00000037379	Spon2	2310045I24Rik|AI504350|M-spondin|Mindin|Mspondin	spondin 2, extracellular matrix protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25679383-2	chr7	25678883	25679883	+	840.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1397.0	NM_001362154	232987.0	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107316156-3	chr11	107315685	107316685	+	840.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	MLT1A|LTR|ERVL-MaLR	-126804.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110342210-3	chr9	110341717	110342717	+	840.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001144, intron 1 of 22)	intron (NM_001001144, intron 1 of 22)	8861.0	NM_001001144	235623.0	Mm.288741	NM_001001144	ENSMUSG00000032485	Scap	9530044G19|mKIAA0199	SREBF chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3451313-2	chr11	3450813	3451813	+	840.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_145355, intron 1 of 7)	L3|LINE|CR1	-1124.0	NR_028317	71523.0	Mm.72795	NM_027820	ENSMUSG00000034587	8430429K09Rik	-	RIKEN cDNA 8430429K09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20789636-3	chr18	20789124	20790124	+	840.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43220.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99353370-2	chr5	99352870	99353870	+	840.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	ORR1C1|LTR|ERVL-MaLR	-100443.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-17250174-8	chr19	17249666	17250666	+	840.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89339.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	39.0	101.5	66.5	41.5	81.5	55.0
Merged-chr11-98740680-4	chr11	98740172	98741172	+	840.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1113.0	NM_178060	21833.0	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52303644-3	chr6	52303145	52304145	+	840.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-9853.0	NM_007966	14028.0	Mm.389754	NM_007966	ENSMUSG00000005503	Evx1	Evx-1	even-skipped homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152886950-2	chr3	152886464	152887464	+	840.7999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	95243.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	2.5	5.5	2.5	13.0	6.0	1.5
Merged-chr6-34927322-4	chr6	34926838	34927838	+	840.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009292, intron 1 of 8)	intron (NM_009292, intron 1 of 8)	6390.0	NM_009292	20899.0	Mm.5171	NM_009292	ENSMUSG00000029848	Stra8	-	stimulated by retinoic acid gene 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37671323-4	chr13	37670826	37671826	+	840.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-154712.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64999334-3	chr5	64998826	64999826	+	840.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026667, intron 3 of 13)	intron (NM_026667, intron 3 of 13)	29008.0	NR_030577	100124451.0		NR_030577	ENSMUSG00000077042	Mir574	Mirn574|mir-574|mmu-mir-574	microRNA 574	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-97746122-3	chr4	97745604	97746604	+	840.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	CpG	-31522.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120064795-3	chr9	120064275	120065275	+	840.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009987, intron 1 of 1)	intron (NM_009987, intron 1 of 1)	3521.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	2.0	3.5	1.5	10.5	4.5	3.0
Merged-chr2-70945100-3	chr2	70944595	70945595	+	840.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73279.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112673386-3	chr13	112672882	112673882	+	840.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178746, intron 2 of 14)	intron (NM_178746, intron 2 of 14)	12616.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67451110-3	chr17	67450589	67451589	+	840.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96598.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-56131744-3	chr7	56131240	56132240	+	840.755554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360080, intron 24 of 92)	intron (NM_001360080, intron 24 of 92)	81351.0	NM_001360080	15204.0	Mm.20929	NM_010418	ENSMUSG00000030451	Herc2	D15F32S1h|D7H15F32S1|D7H15F37S1|jdf2|mKIAA0393|rjs	HECT and RLD domain containing E3 ubiquitin protein ligase 2	protein-coding	3.5	0.0	2.0	0.0	0.0	3.5
Merged-chr16-43109523-4	chr16	43109016	43110016	+	840.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285805, intron 2 of 10)	Lx3B|LINE|L1	-137768.0	NM_181058	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103547893-4	chr14	103547427	103548427	+	840.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022886, intron 8 of 30)	B1_Mm|SINE|Alu	34586.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67250038-4	chr18	67249539	67250539	+	840.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-4209.0	NM_001357518	225651.0	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	Pgap5	metallophosphoesterase 1	protein-coding	25.0	44.5	30.5	6.0	37.0	31.5
Merged-chr1-45824625-4	chr1	45824144	45825144	+	840.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	29478.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97151648-4	chr11	97151099	97152099	+	840.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1887.0	NM_198100	73174.0	Mm.27882	NM_198100	ENSMUSG00000038517	Tbkbp1	3110043L15Rik|ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-107721752-2	chr5	107721252	107722252	+	840.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_010278, exon 3 of 6)	exon (NM_010278, exon 3 of 6)	2591.0	NM_010278	14581.0	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-68666599-4	chr3	68666080	68667080	+	840.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24064.0	NM_001159424	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118154163-2	chr7	118153663	118154663	+	840.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001031814, intron 48 of 62)	intron (NM_001031814, intron 48 of 62)	-24538.0	NM_019419	54208.0	Mm.29924	NM_019419	ENSMUSG00000030654	Arl6ip1	AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31602622-4	chr15	31602151	31603151	+	840.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007637)	promoter-TSS (NM_007637)	535.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35177970-3	chr9	35177466	35178466	+	840.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1979.0	NM_027030	69305.0	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	35.0	74.0	41.0	77.5	192.0	107.5
Merged-chr9-116060833-4	chr9	116060361	116061361	+	840.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028638, intron 14 of 14)	intron (NM_028638, intron 14 of 14)	114502.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34195826-4	chr7	34195303	34196303	+	840.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026549, intron 3 of 6)	B2_Mm2|SINE|B2	867.0	NM_026549	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72566209-4	chr6	72565701	72566701	+	840.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_144917, exon 13 of 13)	3' UTR (NM_144917, exon 13 of 13)	16554.0	NM_001271395	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34204489-4	chr13	34203977	34204977	+	840.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 4 of 10)	MIR|SINE|MIR	41513.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	1.0	0.5	0.0	7.0	4.0	5.5
Merged-chr9-65547922-4	chr9	65547420	65548420	+	840.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32167.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	18.5	13.0	7.5	3.5	19.5	3.0
Merged-chr8-83609261-3	chr8	83608746	83609746	+	840.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308227, intron 1 of 2)	intron (NM_001308227, intron 1 of 2)	698.0	NM_001308227	81489.0	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	13.5	44.5	26.0	33.0	62.5	37.5
Merged-chr1-160157523-3	chr1	160157123	160158123	+	840.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4048.0	NM_177839	329278.0	Mm.90140	NM_177839	ENSMUSG00000026725	Tnn	TN-W|Tnw|tenascin-W	tenascin N	protein-coding	23.5	3.0	0.0	24.0	14.0	22.0
Merged-chr2-90965684-3	chr2	90965128	90966128	+	840.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001244891, intron 2 of 14)	intron (NM_001244891, intron 2 of 14)	25231.0	NM_017368	13046.0	Mm.29495	NM_017368	ENSMUSG00000005506	Celf1	1600010O03Rik|AA407467|Brunol2|CUG-BP|CUG-BP1|CUGBP|Cugbp1|D2Wsu101e|HNAB50|NAB50	CUGBP, Elav-like family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47581697-3	chr9	47581194	47582194	+	840.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	51342.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	16.0	6.5	11.0	28.5	33.0	28.5
Merged-chr6-125494375-3	chr6	125493986	125494986	+	840.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007657, intron 1 of 7)	CpG	274.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	1.5	0.0	0.5	0.0	0.0	5.0
Merged-chr13-75825896-2	chr13	75825396	75826396	+	840.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR78B|LTR|ERV1	-13989.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	0.0	2.0	1.0	0.0	0.0	1.0
Merged-chr18-84784813-4	chr18	84784252	84785252	+	840.645874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40685.0	NR_155706	102641800.0		NR_155706		Gm38576	-	predicted gene, 38576	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-75190952-2	chr1	75190452	75191452	+	840.625	f1_balb.idr|f1_c57bl6.idr	intron (NR_109938, intron 1 of 15)	intron (NR_109938, intron 1 of 15)	1058.0	NM_001003917	245860.0	Mm.238266	NM_001003917	ENSMUSG00000033124	Atg9a	AU019532|Apg9l1|Atg9|Atg9l1	autophagy related 9A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-6836936-4	chr13	6836461	6837461	+	840.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-188190.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132806384-4	chr4	132805886	132806886	+	840.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR24|LTR|ERV1	-10022.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-40890417-3	chr8	40889903	40890903	+	840.611145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007514, intron 1 of 11)	MLT1B|LTR|ERVL-MaLR	28036.0	NM_001044740	11988.0	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	4.0	16.5	9.0	16.5	0.0	3.5
Merged-chr18-9506065-5	chr18	9505614	9506614	+	840.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55960.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	12.0	0.0	4.5	5.5	6.0	0.5
Merged-chr1-92697047-4	chr1	92696552	92697552	+	840.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48211.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166289433-4	chr2	166288931	166289931	+	840.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033467, intron 2 of 2)	intron (NR_033467, intron 2 of 2)	15523.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	9.5	7.5	5.0	3.5	11.5	1.5
Merged-chr11-117081852-4	chr11	117081348	117082348	+	840.5750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4500.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37070068-4	chr19	37069573	37070573	+	840.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198300, intron 7 of 10)	L1MA5|LINE|L1	-103770.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42171185-3	chr10	42170677	42171677	+	840.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105565.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-35152063-3	chr19	35151563	35152563	+	840.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	186667.0	NR_035473	100316775.0		NR_035473	ENSMUSG00000089151	Mir1950	mmu-mir-1950	microRNA 1950	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119100498-3	chr9	119099958	119100958	+	840.544434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2020.0	NM_177117	320256.0	Mm.110648	NM_177117	ENSMUSG00000038060	Dlec1	D630005C06Rik	deleted in lung and esophageal cancer 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119290109-2	chr2	119289586	119290586	+	840.541626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172269, intron 1 of 4)	intron (NM_172269, intron 1 of 4)	1344.0	NM_172269	228545.0	Mm.294761	NM_172269	ENSMUSG00000034216	Vps18	9930024E13Rik	VPS18 CORVET/HOPS core subunit	protein-coding	19.0	26.0	26.0	13.5	33.0	22.5
Merged-chr14-32482305-4	chr14	32481792	32482792	+	840.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16383.0	NM_009891	12647.0	Mm.442817	NM_009891	ENSMUSG00000021919	Chat	B230380D24Rik|CHOACTase	choline acetyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54579844-3	chr14	54579331	54580331	+	840.505554	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2170.0	NM_010590	16475.0	Mm.100253	NM_010590	ENSMUSG00000022178	Ajuba	Jub	ajuba LIM protein	protein-coding	47.5	98.5	63.5	3.5	39.0	18.0
Merged-chr5-141240904-2	chr5	141240404	141241404	+	840.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177879)	promoter-TSS (NM_177879)	-630.0	NM_177879	330222.0	Mm.151931	NM_177879	ENSMUSG00000039683	Sdk1	5330440E10|6720466O15Rik	sidekick cell adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-78871228-2	chr2	78870728	78871728	+	840.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356395, intron 2 of 5)	intron (NM_001356395, intron 2 of 5)	1550.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-127582557-2	chr6	127582057	127583057	+	840.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033464, intron 1 of 6)	intron (NM_001033464, intron 1 of 6)	4582.0	NM_001033464	381812.0	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	8.0	8.0	2.0	6.0	4.0	2.0
Merged-chr12-102388969-2	chr12	102388469	102389469	+	840.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 9 of 9)	intron (NM_177620, intron 9 of 9)	50844.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113102713-2	chr12	113102213	113103213	+	840.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346696, intron 1 of 19)	intron (NM_001346696, intron 1 of 19)	4435.0	NM_054081	116870.0	Mm.212577	NM_054081	ENSMUSG00000021144	Mta1	-	metastasis associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40754517-2	chr19	40754017	40755017	+	840.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-76762.0	NM_172839	240665.0	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50430342-4	chr11	50429793	50430793	+	840.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172557, intron 1 of 17)	intron (NM_172557, intron 1 of 17)	818.0	NM_172557	216724.0	Mm.390400	NM_172557	ENSMUSG00000020375	Rufy1	3000002E04Rik|Rabip4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78807595-2	chr15	78807091	78808091	+	840.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4549.0	NM_130859	105844.0	Mm.17629	NM_130859	ENSMUSG00000033170	Card10	AI449026|Bimp1|Carma3	caspase recruitment domain family, member 10	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr11-81970090-2	chr11	81969590	81970590	+	840.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1694.0	NM_001034013	11418.0	Mm.234998	NM_007384	ENSMUSG00000020704	Asic2	ACIC2|Accn1|BNC1|BNaC1|BNaC1a|Mdeg	acid-sensing (proton-gated) ion channel 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80806529-2	chr7	80806029	80807029	+	840.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3198.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69658142-2	chr11	69657642	69658642	+	840.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301711, intron 3 of 6)	intron (NM_001301711, intron 3 of 6)	3105.0	NM_009235	20670.0	Mm.347499	NM_009235	ENSMUSG00000041287	Sox15	-	SRY (sex determining region Y)-box 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3716268-2	chr8	3715768	3716768	+	840.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029465, exon 9 of 9)	3' UTR (NM_029465, exon 9 of 9)	4383.0	NM_029465	75863.0	Mm.109183	NM_029465	ENSMUSG00000074491	Clec4g	4930572L20Rik	C-type lectin domain family 4, member g	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120574764-2	chr11	120574264	120575264	+	840.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1511.0	NM_011032	18453.0	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	33.5	43.0	28.0	31.5	41.0	21.5
Merged-chr2-101628441-2	chr2	101627939	101628939	+	840.5	f0_c57.idr|f1_c57bl6.idr	intron (NM_009020, intron 2 of 2)	intron (NM_009020, intron 2 of 2)	547.0	NM_026592	68170.0	Mm.31263	NM_026592	ENSMUSG00000027165	B230118H07Rik	NWC	RIKEN cDNA B230118H07 gene	protein-coding	2.5	4.0	1.5	0.0	2.5	0.0
Merged-chr2-58199619-4	chr2	58199088	58200088	+	840.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35614.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149610755-2	chr4	149610255	149611255	+	840.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023051, intron 1 of 18)	intron (NM_023051, intron 1 of 18)	24287.0	NM_023051	65945.0	Mm.38993	NM_023051	ENSMUSG00000039953	Clstn1	1810034E21Rik|Cst-1|Cstn1	calsyntenin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-55365079-2	chr15	55364579	55365579	+	840.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181277, intron 7 of 47)	ID4|SINE|ID	57329.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34447310-2	chr7	34446810	34447810	+	840.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-57605.0	NM_025948	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28368658-2	chr17	28368158	28369158	+	840.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3442.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140742053-4	chr5	140741574	140742574	+	840.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 3 of 7)	intron (NM_173405, intron 3 of 7)	17947.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-195037629-1	chr1	195037129	195038129	+	840.5	f0_balb.idr	promoter-TSS (NR_029745)	promoter-TSS (NR_029745)	82.0	NR_029745	387224.0		NR_029745	ENSMUSG00000065548	Mir29c	Mirn29c|mir-29c|mmu-mir-29c	microRNA 29c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35307066-2	chr17	35306566	35307566	+	840.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13481.0	NM_010390	15006.0	Mm.466882	NM_010390	ENSMUSG00000079507	H2-Q1	H-2Q1|Q1|Q1b|Q1d|Q1k|Qa-1|Qa1|Qed-1	histocompatibility 2, Q region locus 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80934708-2	chr10	80934208	80935208	+	840.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	4617.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64223603-3	chr15	64223097	64224097	+	840.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	89076.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.5	4.0	3.5	0.5	9.5	4.0
Merged-chr5-64759238-4	chr5	64758733	64759733	+	840.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44290.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	2.5	9.5	5.0	2.0	6.0	10.0
Merged-chr4-78736357-2	chr4	78735863	78736863	+	840.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	142316.0	NR_131142	623726.0		NR_131142		A430085M09Rik	EG623726	RIKEN cDNA A430085M09 gene	ncRNA	3.0	0.0	0.5	5.5	4.5	0.0
Merged-chr7-24373563-2	chr7	24373074	24374074	+	840.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163510, intron 1 of 8)	intron (NM_001163510, intron 1 of 8)	3311.0	NM_008433	16534.0	Mm.9911	NM_008433	ENSMUSG00000054342	Kcnn4	IK1|IKCA1|KCA4|KCa3.1|SK4|SKCas|mIKCa1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	protein-coding	3.0	11.0	1.0	0.0	1.0	0.0
Merged-chr5-66190580-4	chr5	66190070	66191070	+	840.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040695, intron 1 of 2)	intron (NR_040695, intron 1 of 2)	765.0	NR_040695	73639.0	Mm.48851	NR_040695	ENSMUSG00000107014	1700126H18Rik	-	RIKEN cDNA 1700126H18 gene	ncRNA	1.5	2.0	0.5	3.0	6.0	0.0
Merged-chr12-70156282-3	chr12	70155813	70156813	+	840.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195033, intron 1 of 12)	intron (NM_001195033, intron 1 of 12)	2142.0	NM_001195033	100504285.0	Mm.291105	NM_001195033	ENSMUSG00000090121	Abhd12b	Gm804	abhydrolase domain containing 12B	protein-coding	0.0	0.0	3.5	1.0	0.0	1.0
Merged-chr2-60809007-3	chr2	60808516	60809516	+	840.43335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	MLT1C|LTR|ERVL-MaLR	72422.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142474624-4	chr3	142474121	142475121	+	840.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22313.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.0	4.5	0.0	0.0	3.0	0.0
Merged-chr8-67515982-4	chr8	67515452	67516452	+	840.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11B|LTR|ERVK	-7902.0	NM_008674	17962.0	Mm.57193	NM_008674	ENSMUSG00000056426	Nat3	-	N-acetyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78595625-2	chr15	78595089	78596089	+	840.4166869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1458.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0.0	7.0	6.0	3.0	5.5	7.5
Merged-chr13-52115075-2	chr13	52114575	52115575	+	840.416626	f1_balb.idr|f1_c57bl6.idr	intron (NR_045061, intron 3 of 7)	ORR1E|LTR|ERVL-MaLR	18334.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-113505260-4	chr7	113504753	113505753	+	840.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8581.0	NM_001285831	67420.0	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49201846-3	chr13	49201308	49202308	+	840.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	14218.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-104048211-3	chr5	104047777	104048777	+	840.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_049192)	TTS (NR_049192)	274.0	NR_049192	100885831.0		NR_049192	ENSMUSG00000093690	Mir5619	Gm23866|mir-5619|mmu-mir-5619	microRNA 5619	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-17402996-3	chr14	17402496	17403496	+	840.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-257964.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147867803-3	chr4	147867300	147868300	+	840.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025365, intron 1 of 9)	RMER15|LTR|ERVL	919.0	NM_001025365	28010.0	Mm.250504	NM_133873	ENSMUSG00000029022	Miip	AA553001|AI853621|D4Wsu114e|IIP45	migration and invasion inhibitory protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63075527-2	chr14	63075027	63076027	+	840.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20454.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-53064305-4	chr6	53063796	53064796	+	840.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 1 of 4)	ORR1E|LTR|ERVL-MaLR	4328.0	NM_173406	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93083784-3	chr1	93083285	93084285	+	840.3666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294149, intron 1 of 47)	intron (NM_001294149, intron 1 of 47)	-1305.0	NM_001294150	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5614949-6	chr2	5614355	5615355	+	840.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	61191.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151096168-4	chr1	151095576	151096576	+	840.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41958.0	NR_038011	402734.0	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-31050442-2	chr1	31049967	31050967	+	840.333374	f0_c57.idr|f1_c57bl6.idr	intron (NR_136907, intron 1 of 3)	intron (NR_136907, intron 1 of 3)	45987.0	NR_136907	102634473.0	Mm.484482	NR_136907	ENSMUSG00000100371	Gm29669	-	predicted gene 29669	ncRNA	1.0	1.5	0.0	0.0	2.5	5.5
Merged-chr5-142911140-2	chr5	142910640	142911640	+	840.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4386.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98360729-2	chr11	98360229	98361229	+	840.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_021547, intron 1 of 14)	intron (NM_021547, intron 1 of 14)	2361.0	NM_021547	59045.0	Mm.265546	NM_021547	ENSMUSG00000018167	Stard3	Mln64|es64	START domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59568019-4	chr15	59567514	59568514	+	840.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-80640.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-166441988-7	chr1	166441277	166442277	+	840.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13711.0	NR_151518	102636226.0	Mm.412602	NR_151518		Gm33354	-	predicted gene, 33354	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-6976404-3	chr1	6975904	6976904	+	840.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB1|LINE|L1	-112516.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6978477-3	chr19	6977981	6978981	+	840.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008020, intron 3 of 5)	intron (NM_008020, intron 3 of 5)	911.0	NM_001360288	14227.0	Mm.4234	NM_008020	ENSMUSG00000056629	Fkbp2	mFKBP13|mFKBP2	FK506 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-60860732-3	chr1	60860207	60861207	+	840.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48318.0	NM_009843	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	1.0	0.0	1.5	1.0	0.0	0.0
Merged-chr16-92674928-3	chr16	92674425	92675425	+	840.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 4 of 6)	intron (NM_001111022, intron 4 of 6)	22404.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	7.5	1.0	5.0	10.0	3.0
Merged-chr6-137471158-6	chr6	137470625	137471625	+	840.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48770.0	NM_001271589	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-19006321-4	chr2	19005813	19006813	+	840.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7994.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153032342-3	chr2	153031790	153032790	+	840.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001011732, exon 1 of 3)	exon (NM_001011732, exon 1 of 3)	438.0	NM_001011732	228787.0	Mm.376111	NM_001011732	ENSMUSG00000042631	Xkr7	AY534253	X-linked Kx blood group related 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-85402937-4	chr6	85402442	85403442	+	840.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20944.0	NM_001007472	384452.0	Mm.347883	NM_001007472	ENSMUSG00000068302	Noto	Flh|MmNot|Not|tc	notochord homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37452350-5	chr13	37451854	37452854	+	840.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	107009.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	1.0	12.0	10.0	2.0	3.5	13.0
Merged-chr7-19507440-7	chr7	19506923	19507923	+	840.261902	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177692, exon 2 of 2)	exon (NM_177692, exon 2 of 2)	908.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10854735-2	chr19	10854235	10855235	+	840.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_023044, intron 4 of 7)	intron (NM_023044, intron 4 of 7)	12191.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-89419606-2	chr7	89419106	89420106	+	840.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6700.0	NR_102276	101521.0	Mm.26902	NR_102276	ENSMUSG00000109311	AI314278	-	expressed sequence AI314278	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35221386-2	chr17	35220875	35221875	+	840.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_010909, intron 2 of 3)	intron (NM_010909, intron 2 of 3)	-13635.0	NM_001347351	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	4.0	25.0	5.5	7.0	54.0	6.0
Merged-chr1-152615161-2	chr1	152614661	152615661	+	840.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	LTR90A|LTR|LTR	10056.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23968868-2	chr17	23968351	23969351	+	840.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6379.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	24.0	19.0	13.5	0.0	6.0	1.0
Merged-chr19-4165491-2	chr19	4164991	4165991	+	840.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_134148, exon 10 of 10)	exon (NM_134148, exon 10 of 10)	-2108.0	NR_153659	58988.0	Mm.271937	NM_021485	ENSMUSG00000024830	Rps6kb2	S6K-beta-2|S6K2	ribosomal protein S6 kinase, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88292176-4	chr3	88291679	88292679	+	840.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357024, intron 2 of 3)	B2_Mm2|SINE|B2	4659.0	NM_029801	76927.0	Mm.273330	NM_029801	ENSMUSG00000010538	Tsacc	1700021C14Rik|SIP	TSSK6 activating co-chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17549128-4	chr17	17548613	17549613	+	840.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 11 of 17)	intron (NM_172827, intron 11 of 17)	75376.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	4.0	2.0	1.5	9.0	4.0	1.5
Merged-chr17-46342493-4	chr17	46341989	46342989	+	840.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-14466.0	NM_170680	224814.0	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-51539854-3	chr1	51539358	51540358	+	840.2333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151621, intron 3 of 3)	intron (NR_151621, intron 3 of 3)	56860.0	NR_151621	100045066.0	Mm.404734	NR_151621		Gm17767	-	predicted gene, 17767	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-140700472-4	chr4	140699995	140700995	+	840.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173867)	promoter-TSS (NM_173867)	-978.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	28.5	48.5	15.5	19.0	87.5	46.0
Merged-chr3-101779099-3	chr3	101778600	101779600	+	840.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	57123.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-18595053-3	chr19	18594558	18595558	+	840.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 3 of 9)	L1MC5|LINE|L1	36755.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	7.0	5.5	20.0	1.5	11.0	6.5
Merged-chr13-107885173-3	chr13	107884677	107885677	+	840.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	4887.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86754325-3	chr17	86753763	86754763	+	840.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010137, exon 1 of 16)	5' UTR (NM_010137, exon 1 of 16)	399.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	6.5	6.5	12.5	6.5	7.0	13.0
Merged-chr4-43469621-4	chr4	43469109	43470109	+	840.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	14100.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	52.5	156.5	38.0	57.5	115.5	100.0
Merged-chr5-42984963-4	chr5	42984459	42985459	+	840.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-248504.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60285385-4	chr2	60284859	60285859	+	840.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290660)	promoter-TSS (NM_001290660)	-875.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56763178-2	chr17	56762678	56763678	+	840.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1573.0	NM_001360405	224907.0	Mm.293973	NM_144858	ENSMUSG00000007603	Dus3l	AI662135|AW557805	dihydrouridine synthase 3-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51955944-3	chr13	51955400	51956400	+	840.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	109225.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110508106-4	chr12	110507611	110508611	+	840.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081457, intron 1 of 12)	MIRb|SINE|MIR	22372.0	NM_012023	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-76088700-3	chr2	76088196	76089196	+	840.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081033, intron 10 of 19)	intron (NM_001081033, intron 10 of 19)	-106729.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-139049062-4	chr3	139048594	139049594	+	840.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 2 of 13)	intron (NM_001356388, intron 2 of 13)	26107.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	29.0	32.0	31.5	47.5	43.0	36.0
Merged-chr7-142284118-2	chr7	142283639	142284639	+	840.166626	f0_balb.idr|f1_balb.idr	Intergenic	ERVB4_1-I_MM-int|LTR|ERVK	-9776.0	NM_001199309	100043627.0	Mm.388589	NM_001199309	ENSMUSG00000056885	Gm4559	-	predicted gene 4559	protein-coding	2.0	26.0	16.0	7.0	8.0	15.0
Merged-chr19-6492026-2	chr19	6491526	6492526	+	840.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 15 of 22)	intron (NM_001205234, intron 15 of 22)	51044.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70604666-4	chr14	70604185	70605185	+	840.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001252663, exon 14 of 14)	3' UTR (NM_001252663, exon 14 of 14)	-4850.0	NM_194345	239170.0	Mm.247582	NM_194345	ENSMUSG00000022095	Fam160b2	G430067P06Rik|Rai16	family with sequence similarity 160, member B2	protein-coding	5.0	1.0	2.5	0.0	0.0	1.5
Merged-chr14-75791224-4	chr14	75790732	75791732	+	840.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-4195.0	NM_026232	67554.0	Mm.46067	NM_026232	ENSMUSG00000022003	Slc25a30	4933433D23Rik|AV025504|AV221431|AW319655|KMCP1	solute carrier family 25, member 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67265081-3	chr10	67264581	67265581	+	840.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20200.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85516026-3	chr12	85515546	85516546	+	840.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42156.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80684069-3	chr17	80683574	80684574	+	840.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360278, intron 1 of 33)	intron (NM_001360278, intron 1 of 33)	43951.0	NM_001360278	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70160252-3	chr14	70159750	70160750	+	840.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004155)	promoter-TSS (NM_001004155)	-748.0	NM_001004155	268759.0	Mm.12148	NM_001004155	ENSMUSG00000044551	9930012K11Rik	-	RIKEN cDNA 9930012K11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86216715-4	chr15	86216216	86217216	+	840.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 1 of 12)	MLT1C|LTR|ERVL-MaLR	2257.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-43702605-4	chr10	43702069	43703069	+	840.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43589.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66085428-2	chr5	66084928	66085928	+	840.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	12751.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	1.5	4.0	2.5	5.0	4.0	0.5
Merged-chr11-62648050-2	chr11	62647550	62648550	+	840.099976	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175002)	promoter-TSS (NM_175002)	-1.0	NM_001357955	192976.0	Mm.339972	NM_198861	ENSMUSG00000046417	Lrrc75a	Fam211a	leucine rich repeat containing 75A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-142071769-4	chr4	142071280	142072280	+	840.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-12518.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102272581-3	chr4	102272097	102273097	+	840.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177983, intron 1 of 5)	intron (NM_001177983, intron 1 of 5)	17658.0	NM_019840	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110483384-3	chr11	110482898	110483898	+	840.0833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 2 of 11)	intron (NM_001356352, intron 2 of 11)	4058.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0.0	2.5	0.0	1.0	0.0	2.5
Merged-chr13-44996487-4	chr13	44995983	44996983	+	840.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025772, intron 1 of 9)	intron (NM_025772, intron 1 of 9)	5613.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35329925-4	chr12	35329443	35330443	+	840.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-135046.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	2.0	22.0	16.5	3.5	11.0	10.0
Merged-chr13-74167079-3	chr13	74166640	74167640	+	840.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41560.0	NM_177333	211446.0	Mm.261859	NM_177333	ENSMUSG00000034152	Exoc3	2810050O03Rik|E430013E20Rik|Sec6|Sec6l1	exocyst complex component 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98954175-3	chr11	98953714	98954714	+	840.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009024, intron 2 of 8)	intron (NM_009024, intron 2 of 8)	-6257.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58108230-3	chr11	58107609	58108609	+	840.0476070000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356477, intron 1 of 6)	intron (NM_001356477, intron 1 of 6)	3880.0	NM_001356477	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	0.0	17.0	3.5	21.0	32.5	18.0
Merged-chr15-97422764-4	chr15	97422278	97423278	+	840.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-175491.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70751304-3	chr8	70750820	70751820	+	840.0238039999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310465)	TTS (NM_001310465)	-3359.0	NM_001328047	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	26.0	27.5	21.0	5.0	27.0	13.0
Merged-chr16-76002492-4	chr16	76001987	76002987	+	840.020874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155447, intron 2 of 3)	intron (NR_155447, intron 2 of 3)	1703.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95433532-2	chr8	95433032	95434032	+	840.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008187, intron 1 of 5)	intron (NM_008187, intron 1 of 5)	1337.0	NM_008187	14894.0	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	0.0	1.0	0.0	0.0	1.0	0.0
Merged-chr17-25288850-2	chr17	25288344	25289344	+	840.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-9550.0	NM_178372	328780.0	Mm.127166	NM_178372	ENSMUSG00000056399	Prss34	C130091P12|Mcp11|mMcp-11	protease, serine 34	protein-coding	0.0	0.0	6.0	0.0	3.0	1.5
Merged-chr15-59621688-1	chr15	59621188	59622188	+	840.0	f1_balb.idr	Intergenic	Intergenic	-26966.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	2.0	11.5	4.0	0.5	1.5	0.5
Merged-chr11-49855418-1	chr11	49854918	49855918	+	840.0	f0_c57.idr	intron (NM_016961, intron 2 of 11)	intron (NM_016961, intron 2 of 11)	8667.0	NM_016961	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80210546-2	chr11	80210046	80211046	+	840.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163355, intron 1 of 19)	intron (NM_001163355, intron 1 of 19)	1491.0	NM_021536	59040.0	Mm.489674	NM_021536	ENSMUSG00000017686	Rhot1	2210403N23Rik|AA415293|AF244542|AI834919|Arht1|C430039G08Rik|Miro1	ras homolog family member T1	protein-coding	6.0	9.5	4.0	6.0	6.5	3.5
Merged-chr5-64812251-3	chr5	64811749	64812749	+	840.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	8726.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70607256-2	chr11	70606756	70607756	+	840.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 14 of 30)	intron (NM_016713, intron 14 of 30)	-8638.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88840923-2	chr6	88840423	88841423	+	840.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155424, intron 1 of 11)	intron (NR_155424, intron 1 of 11)	1012.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69575734-1	chr12	69575234	69576234	+	840.0	f1_balb.idr	Intergenic	PB1D10|SINE|Alu	7294.0	NM_001033236	207965.0	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	0.0	0.0	0.0	2.0	6.5	2.0
Merged-chr13-49217249-2	chr13	49216749	49217749	+	840.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1223.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-72929334-1	chr15	72928834	72929834	+	840.0	f0_balb.idr	intron (NM_029640, intron 14 of 21)	intron (NM_029640, intron 14 of 21)	-119010.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0.0	0.0	1.0	0.0	0.0	0.5
Merged-chr16-92672214-2	chr16	92671714	92672714	+	840.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 4 of 6)	MLT1C|LTR|ERVL-MaLR	25115.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	3.0	0.0	1.0	3.0	0.0	1.0
Merged-chr8-108692432-4	chr8	108691940	108692940	+	840.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A2|LTR|ERVK	-22204.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	10.5	27.0	12.5	18.0	25.0	8.5
Merged-chr2-129630273-1	chr2	129629773	129630773	+	840.0	f1_c57bl6.idr	3' UTR (NM_001291021, exon 6 of 6)	3' UTR (NM_001291021, exon 6 of 6)	34811.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	6.0	14.5	8.0	7.0	1.5	16.0
Merged-chr6-72375355-2	chr6	72374833	72375833	+	840.0	f0_balb.idr|f0_c57.idr	intron (NM_016872, intron 1 of 2)	MIR|SINE|MIR	5135.0	NM_001080742	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13469094-3	chr10	13468673	13469673	+	840.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	5223.0	NM_001195065	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-115829598-2	chr4	115829069	115830069	+	840.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175308, intron 1 of 3)	RSINE1|SINE|B4	1477.0	NM_175308	100465.0	Mm.35571	NM_175308	ENSMUSG00000028709	Mob3c	AW822253|D130076I06Rik|Mobkl2c	MOB kinase activator 3C	protein-coding	10.0	14.5	12.0	5.5	15.5	10.0
Merged-chr2-150666378-2	chr2	150665878	150666878	+	840.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080575, intron 1 of 13)	intron (NM_080575, intron 1 of 13)	-1116.0	NR_040331	109344.0	Mm.440012	NR_040331	ENSMUSG00000087406	E130215H24Rik	-	RIKEN cDNA E130215H24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122135902-2	chr5	122135356	122136356	+	840.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289809)	promoter-TSS (NM_001289809)	-963.0	NM_001289809	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	0.0	0.0	0.0	0.0	2.5	0.0
Merged-chr17-70756024-3	chr17	70755506	70756506	+	840.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	90771.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120513530-1	chr5	120513030	120514030	+	840.0	f0_balb.idr	intron (NM_001177595, intron 2 of 13)	L2a|LINE|L2	2338.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-103679515-2	chr5	103679015	103680015	+	840.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23783.0	NM_001163550	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-7053577-3	chr1	7053066	7054066	+	840.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35354.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142338915-2	chr7	142338438	142339438	+	840.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177265, intron 3 of 3)	intron (NM_177265, intron 3 of 3)	33321.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.0	1.0	2.5	2.0	0.5	0.0
Merged-chr5-38598832-3	chr5	38598319	38599319	+	840.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR2_Mm|LTR|ERVK	-37224.0	NM_011715	22388.0	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	3.0	7.5	4.0	0.0	0.0	1.5
Merged-chr2-156705643-3	chr2	156705140	156706140	+	840.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146128, intron 4 of 12)	intron (NM_146128, intron 4 of 12)	15269.0	NR_040505	74846.0	Mm.443946	NR_040505	ENSMUSG00000086638	4930405A21Rik	-	RIKEN cDNA 4930405A21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-97106691-3	chr9	97106190	97107190	+	839.9722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138756, intron 1 of 6)	intron (NM_138756, intron 1 of 6)	4351.0	NM_138756	192287.0	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-117289842-4	chr13	117289270	117290270	+	839.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69197.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	1.0	7.0	0.0	10.0	7.5	6.5
Merged-chr10-57747253-4	chr10	57746729	57747729	+	839.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-37694.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87350508-3	chr3	87350030	87351030	+	839.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7351.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	93.0	252.0	197.0	54.0	209.5	140.5
Merged-chr1-57862155-3	chr1	57861650	57862650	+	839.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164566, intron 2 of 11)	intron (NM_001164566, intron 2 of 11)	16579.0	NM_001164566	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	0.0	7.0	2.5	0.0	12.5	5.5
Merged-chr6-142346343-3	chr6	142345823	142346823	+	839.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183165, intron 1 of 11)	intron (NM_183165, intron 1 of 11)	626.0	NM_183165	232491.0	Mm.490474	NM_183165	ENSMUSG00000041671	Pyroxd1	-	pyridine nucleotide-disulphide oxidoreductase domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108731020-4	chr8	108730526	108731526	+	839.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	16382.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148501068-3	chr4	148500560	148501560	+	839.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039554)	promoter-TSS (NM_001039554)	-598.0	NM_001039554	654812.0	Mm.388929	NM_001039554	ENSMUSG00000028989	Angptl7	-	angiopoietin-like 7	protein-coding	7.5	18.0	16.5	21.5	38.5	37.5
Merged-chr8-84219282-2	chr8	84218782	84219782	+	839.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_172503, intron 11 of 13)	intron (NM_172503, intron 11 of 13)	-10375.0	NR_037294	100526528.0		NR_037294	ENSMUSG00000105458	Mir3074-2	mir-3074-2|mmu-mir-3074-2	microRNA 3074-2	ncRNA	26.0	41.0	39.5	10.0	39.0	11.0
Merged-chr2-35622140-2	chr2	35621640	35622640	+	839.900024	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001114124, exon 1 of 16)	5' UTR (NM_001114124, exon 1 of 16)	159.0	NM_001114124	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-51790263-3	chr17	51789770	51790770	+	839.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357637, intron 5 of 10)	intron (NM_001357637, intron 5 of 10)	21784.0	NM_001163630	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23182203-3	chr16	23181662	23182662	+	839.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155420, intron 1 of 2)	G-rich|Low_complexity|Low_complexity	6882.0	NR_155420	105246089.0	Mm.390905	NR_155420		C730014E05Rik	-	RIKEN cDNA C730014E05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3856877-3	chr12	3856382	3857382	+	839.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 3 of 22)	intron (NM_007872, intron 3 of 22)	5362.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129515840-3	chr2	129515411	129516411	+	839.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177653, intron 1 of 6)	intron (NM_177653, intron 1 of 6)	20691.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	87.5	157.5	87.0	50.5	55.0	62.0
Merged-chr14-60911001-4	chr14	60910549	60911549	+	839.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	126483.0	NR_040642	70478.0	Mm.274650	NM_027436	ENSMUSG00000021993	Mipep	5730405E07Rik|MIP	mitochondrial intermediate peptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58716355-3	chr1	58715799	58716799	+	839.88092	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	3013.0	NM_001355056	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-74976894-4	chr7	74976399	74977399	+	839.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53312.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-60895600-4	chr19	60895062	60896062	+	839.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	5813.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	19.5	61.0	43.0	27.0	52.0	13.0
Merged-chr10-75436834-4	chr10	75436394	75437394	+	839.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133995, exon 8 of 10)	exon (NM_133995, exon 8 of 10)	-12616.0	NR_045841	71125.0	Mm.399516	NR_045841		4933407G14Rik	-	RIKEN cDNA 4933407G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-149451712-3	chr3	149451229	149452229	+	839.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	176992.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	7.0	2.0	0.0	9.5	14.5	10.5
Merged-chr6-142754935-2	chr6	142754435	142755435	+	839.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1751.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120437876-2	chr8	120437376	120438376	+	839.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50990.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29433500-2	chr17	29433000	29434000	+	839.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER46C|DNA|TcMar-Tigger	-57545.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	31.5	38.0	16.5	0.5	17.0	13.0
Merged-chr14-103793653-3	chr14	103793121	103794121	+	839.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD1|LINE|L1	50080.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125069551-3	chr6	125069051	125070051	+	839.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163269, intron 1 of 1)	intron (NM_001163269, intron 1 of 1)	1631.0	NM_001163269	381810.0	Mm.333386	NM_001163268	ENSMUSG00000067714	Lpar5	GPR93|Gm1072|Gpr92|LPA5	lysophosphatidic acid receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-58163950-2	chr3	58163450	58164450	+	839.8333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040538)	promoter-TSS (NR_040538)	-143.0	NR_040538	67850.0	Mm.416968	NR_040538	ENSMUSG00000100666	1700007F19Rik	-	RIKEN cDNA 1700007F19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-89885345-4	chr13	89884843	89885843	+	839.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028012, intron 7 of 7)	B3|SINE|B2	-142831.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	10.0	7.0	0.0	0.0	1.0	0.5
Merged-chr14-34662012-3	chr14	34661515	34662515	+	839.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8441.0	NR_029647	723831.0		NR_029647	ENSMUSG00000094316	Mir297-1	Mir297a-1|Mirn297-1	microRNA 297-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54637212-4	chr12	54636695	54637695	+	839.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8817.0	NR_035439	100316682.0		NR_035439	ENSMUSG00000106344	Mir1892	Mirn1892|mir-1892|mmu-mir-1892	microRNA 1892	ncRNA	0.5	0.0	0.0	0.5	0.0	0.0
Merged-chr4-150211910-2	chr4	150211410	150212410	+	839.8000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-10775.0	NM_009802	12353.0	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	11.5	43.0	44.5	28.0	15.5	18.0
Merged-chr8-22945079-4	chr8	22944603	22945603	+	839.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29733.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127506240-4	chr2	127505737	127506737	+	839.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019789, intron 2 of 8)	intron (NM_019789, intron 2 of 8)	15155.0	NM_001291005	56461.0	Mm.315292	NM_019789	ENSMUSG00000079056	Kcnip3	4933407H12Rik|AI413860|Csen|DREAM|KChIP3|R74849	Kv channel interacting protein 3, calsenilin	protein-coding	0.0	0.0	3.0	1.0	5.5	2.5
Merged-chr10-112000628-4	chr10	112000124	112001124	+	839.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER44B|DNA|TcMar-Tigger	-3360.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115152482-2	chr11	115151982	115152982	+	839.785706	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163753, intron 2 of 8)	MLT1C|LTR|ERVL-MaLR	-1696.0	NM_021411	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58567621-3	chr15	58567119	58568119	+	839.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	152151.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17066109-3	chr6	17065597	17066597	+	839.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207176, intron 1 of 6)	intron (NM_207176, intron 1 of 6)	948.0	NM_207176	21753.0	Mm.436548	NM_011570	ENSMUSG00000029552	Tes	D6Ertd352e|TESS|Tes1|Tes2|testin2	testis derived transcript	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-124090663-4	chr9	124090165	124091165	+	839.770874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11518.0	NM_009915	12772.0	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-72768418-4	chr12	72767910	72768910	+	839.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008910, intron 1 of 5)	intron (NM_008910, intron 1 of 5)	7199.0	NM_008910	19042.0	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115105347-4	chr11	115104844	115105844	+	839.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163753, intron 1 of 8)	intron (NM_001163753, intron 1 of 8)	13913.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5840649-4	chr19	5840104	5841104	+	839.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131212, exon 1 of 1)	non-coding (NR_131212, exon 1 of 1)	4874.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46547429-3	chr8	46546911	46547911	+	839.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4658.0	NM_027973	71876.0	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147913969-3	chr5	147913518	147914518	+	839.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19203.0	NM_027872	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	7.0	5.5	2.0	12.0	0.0	6.0
Merged-chr16-64865543-4	chr16	64865059	64866059	+	839.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	13558.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164836664-5	chr2	164836277	164837277	+	839.7000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038492, intron 8 of 14)	MIRc|SINE|MIR	3004.0	NM_008906	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59723313-4	chr9	59722839	59723839	+	839.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15575.0	NM_001033498	546134.0	Mm.297580	NM_001033498	ENSMUSG00000074259	Gramd2	BC064463|Gramd2a	GRAM domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14165802-4	chr2	14165274	14166274	+	839.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-8750.0	NM_001081310	625286.0	Mm.158781	NM_001081310	ENSMUSG00000061531	Tmem236	2010003H20Rik|Fam23a|Gm613	transmembrane protein 236	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70808145-2	chr11	70807645	70808645	+	839.6749880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045526, intron 1 of 4)	LTR85a|LTR|Gypsy?	4416.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	1.0	20.0	8.0	12.5	28.0	19.5
Merged-chr10-61069383-3	chr10	61068867	61069867	+	839.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19964.0	NM_025273	13180.0	Mm.39473	NM_025273	ENSMUSG00000020098	Pcbd1	Dcoh|Pcbd|Pcd|Phs	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50971046-3	chr14	50970505	50971505	+	839.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	14864.0	NM_001123371	667034.0	Mm.482171	NM_001123371	ENSMUSG00000068417	Pnp2	-	purine-nucleoside phosphorylase 2	protein-coding	25.0	9.5	19.0	7.0	6.0	14.0
Merged-chr4-6469097-3	chr4	6468596	6469596	+	839.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14825.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-124311720-2	chr9	124311220	124312220	+	839.6666869999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_001243117, exon 2 of 5)	exon (NM_001243117, exon 2 of 5)	974.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-18849501-4	chr8	18848976	18849976	+	839.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026792, intron 1 of 7)	intron (NM_026792, intron 1 of 7)	3197.0	NM_026792	52123.0	Mm.24117	NM_026792	ENSMUSG00000031467	Agpat5	1110013A05Rik|D8Ertd319e	1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114205410-3	chr11	114204910	114205910	+	839.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7152.0	NR_045930	73536.0	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-41191110-4	chr6	41190619	41191619	+	839.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111153.0	NM_011646	22074.0	Mm.383263	NM_011646	ENSMUSG00000054106	Try4	0910001B19Rik|Td	trypsin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105836207-3	chr3	105835697	105836697	+	839.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20630.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-117831436-3	chr12	117830941	117831941	+	839.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12420.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	2.0	9.0	3.0	1.5	18.5	11.0
Merged-chr18-65300815-3	chr18	65300309	65301309	+	839.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037294, intron 5 of 12)	intron (NM_001037294, intron 5 of 12)	51948.0	NR_029600	387231.0		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr17-36015909-3	chr17	36015413	36016413	+	839.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008207, intron 2 of 5)	intron (NM_008207, intron 2 of 5)	4647.0	NM_008207	15042.0	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132308032-3	chr7	132307535	132308535	+	839.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029935, intron 1 of 7)	MER34A1|LTR|ERV1	-7629.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46835770-4	chr8	46835256	46836256	+	839.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008391, intron 6 of 8)	intron (NM_008391, intron 6 of 8)	96011.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167624515-2	chr2	167624015	167625015	+	839.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_023230, intron 1 of 3)	intron (NM_023230, intron 1 of 3)	7490.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95854000-2	chr11	95853543	95854543	+	839.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4774.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	16.0	17.0	14.5	7.5	20.5	2.5
Merged-chr8-84914103-2	chr8	84913603	84914603	+	839.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_103491, intron 1 of 2)	B3|SINE|B2	768.0	NR_103491	100503676.0	Mm.437155	NR_103491	ENSMUSG00000003812	Gm38426	-	predicted gene, 38426	ncRNA	0.0	0.0	0.5	0.0	3.5	0.0
Merged-chr7-101450090-4	chr7	101449610	101450610	+	839.645874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243758)	promoter-TSS (NM_001243758)	-410.0	NM_001243758	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	0.0	0.0	0.0	1.0	3.0	0.0
Merged-chr12-110698765-3	chr12	110698238	110699238	+	839.6333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2343.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-21141874-4	chr2	21141401	21142401	+	839.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	63464.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70383503-4	chr8	70383006	70384006	+	839.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001004062, exon 14 of 14)	3' UTR (NM_001004062, exon 14 of 14)	9958.0	NM_016685	12845.0	Mm.45071	NM_016685	ENSMUSG00000031849	Comp	TSP5	cartilage oligomeric matrix protein	protein-coding	1.0	3.0	4.5	0.0	1.0	0.0
Merged-chr11-117721953-4	chr11	117721455	117722455	+	839.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198022, exon 5 of 22)	exon (NM_198022, exon 5 of 22)	57693.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-93240929-4	chr13	93240432	93241432	+	839.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48515.0	NM_001361537	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	16.0	69.5	66.0	28.0	75.5	41.0
Merged-chr10-44630517-6	chr10	44629990	44630990	+	839.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-171742.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45685344-5	chr17	45684829	45685829	+	839.599976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198167, intron 1 of 23)	CpG	889.0	NM_198167	224807.0	Mm.157904	NM_198167	ENSMUSG00000036026	Tmem63b	BC026370	transmembrane protein 63b	protein-coding	2.5	4.0	0.0	2.0	1.0	3.5
Merged-chr5-137290833-3	chr5	137290327	137291327	+	839.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290010, exon 2 of 5)	exon (NM_001290010, exon 2 of 5)	2573.0	NM_001290010	11423.0	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-76326600-3	chr18	76326099	76327099	+	839.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64154.0	NM_001311070	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	2.5	2.0	6.5	6.5	6.5	7.0
Merged-chr17-72962164-3	chr17	72961658	72962658	+	839.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43853.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-116462001-4	chr12	116461517	116462517	+	839.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133762, exon 29 of 29)	3' UTR (NM_133762, exon 29 of 29)	-23703.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	18.0	40.5	23.0	31.5	40.5	21.0
Merged-chr7-44310955-5	chr7	44310286	44311286	+	839.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034115, intron 1 of 24)	intron (NM_001034115, intron 1 of 24)	522.0	NM_001034115	243961.0	Mm.360368	NM_001034115	ENSMUSG00000038738	Shank1	-	SH3 and multiple ankyrin repeat domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49245262-6	chr11	49244710	49245710	+	839.5277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010794, exon 2 of 3)	5' UTR (NM_010794, exon 2 of 3)	1019.0	NM_001110148	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-33982176-3	chr1	33981664	33982664	+	839.5166630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276764, intron 3 of 102)	intron (NM_001276764, intron 3 of 102)	-29661.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-72995653-2	chr2	72995153	72996153	+	839.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15207.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120791943-2	chr11	120791443	120792443	+	839.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026824, exon 10 of 14)	exon (NM_026824, exon 10 of 14)	4452.0	NM_026824	68730.0	Mm.180622	NM_026824	ENSMUSG00000025155	Dus1l	1110032N12Rik	dihydrouridine synthase 1-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-43381990-2	chr16	43381490	43382490	+	839.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	38206.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58510373-2	chr16	58509873	58510873	+	839.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 1 of 10)	intron (NM_001357433, intron 1 of 10)	13053.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73938257-2	chr17	73937757	73938757	+	839.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 4 of 35)	intron (NM_011723, intron 4 of 35)	11939.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-83617513-2	chr10	83617013	83618013	+	839.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145220, intron 8 of 20)	intron (NM_145220, intron 8 of 20)	31151.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49217849-2	chr13	49217349	49218349	+	839.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1823.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65133979-2	chr9	65133479	65134479	+	839.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290315, intron 18 of 19)	(CA)n|Simple_repeat|Simple_repeat	-7175.0	NM_008988	19289.0	Mm.41529	NM_008988	ENSMUSG00000032394	Igdcc3	2810401C09Rik|AI851425|Punc|WI-14920	immunoglobulin superfamily, DCC subclass, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95636658-2	chr3	95636158	95637158	+	839.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	11678.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	23.0	21.5	20.5	11.0	19.5	19.5
Merged-chr14-121879440-2	chr14	121878940	121879940	+	839.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131000)	promoter-TSS (NR_131000)	-32.0	NR_130999	78312.0	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	18.5	23.5	14.5	15.0	24.5	21.5
Merged-chr10-80123651-2	chr10	80123151	80124151	+	839.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301853, intron 1 of 8)	intron (NM_001301853, intron 1 of 8)	7848.0	NM_001301854	20869.0	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34775510-2	chr2	34775010	34776010	+	839.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163434, intron 8 of 8)	intron (NM_001163434, intron 8 of 8)	3420.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104710504-1	chr9	104710004	104711004	+	839.5	f0_balb.idr	intron (NM_028719, intron 2 of 15)	intron (NM_028719, intron 2 of 15)	141021.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	1.5	1.0	4.5	0.0	6.5	10.5
Merged-chr8-70597798-2	chr8	70597298	70598298	+	839.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023627)	TTS (NM_023627)	3317.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	0.0	1.5	1.5	0.0	0.0	2.0
Merged-chr15-99705755-4	chr15	99705253	99706253	+	839.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031842, intron 6 of 12)	intron (NM_031842, intron 6 of 12)	3466.0	NM_031842	83797.0	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	0.0	0.0	0.0	0.0	5.5	5.0
Merged-chr17-5920339-2	chr17	5919839	5920839	+	839.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025664, intron 11 of 17)	intron (NM_025664, intron 11 of 17)	-20941.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61650536-6	chr14	61650065	61651065	+	839.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	-18455.0	NR_029733	387174.0		NR_029733	ENSMUSG00000093007	Mir15a	Mirn15a|mir-15a|mmu-mir-15a	microRNA 15a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91523787-2	chr6	91523287	91524287	+	839.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7752.0	NM_026309	67678.0	Mm.246693	NM_026309	ENSMUSG00000034192	Lsm3	1010001J12Rik|2610005D18Rik|6030401D18Rik|SMX4|USS2	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31709604-2	chr5	31709104	31710104	+	839.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181281, intron 2 of 10)	B3|SINE|B2	11554.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126678193-2	chr4	126677693	126678693	+	839.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011970, intron 1 of 5)	intron (NM_011970, intron 1 of 5)	550.0	NM_011970	26445.0	Mm.22233	NM_011970	ENSMUSG00000028837	Psmb2	AU045357|AW108089|C7-I|D4Wsu33e|HC7-I	proteasome (prosome, macropain) subunit, beta type 2	protein-coding	17.5	14.0	13.5	3.5	17.0	9.5
Merged-chr8-84065229-2	chr8	84064729	84065729	+	839.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1607.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	2.5	12.5	13.5	4.5	14.5	10.5
Merged-chr12-52687567-3	chr12	52687089	52688089	+	839.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11794.0	NM_198111	238161.0	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	12.0	16.5	5.5	1.5	24.5	5.0
Merged-chr2-145517558-4	chr2	145517050	145518050	+	839.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053195, intron 4 of 16)	intron (NM_053195, intron 4 of 16)	37432.0	NM_001037929	627302.0	Mm.445953	NM_001037929		Gm14092	-	predicted gene 14092	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-109637126-2	chr7	109636626	109637626	+	839.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19979.0	NM_029811	76954.0	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88211562-2	chr1	88211062	88212062	+	839.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201645)	promoter-TSS (NM_201645)	-397.0	NM_201645	394436.0	Mm.300095	NM_201645	ENSMUSG00000089960	Ugt1a1	Gnt1|UDPGT 1-1|UGT1A01|Udpgt-1a|UgtBr1	UDP glucuronosyltransferase 1 family, polypeptide A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28204472-2	chr17	28203972	28204972	+	839.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172617, exon 14 of 15)	exon (NM_172617, exon 14 of 15)	-3306.0	NM_027185	23853.0	Mm.204731	NM_027185	ENSMUSG00000002257	Def6	2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6	differentially expressed in FDCP 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44343352-2	chr9	44342852	44343852	+	839.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110251)	promoter-TSS (NM_001110251)	876.0	NM_013551	15288.0	Mm.247676	NM_013551	ENSMUSG00000032126	Hmbs	PBGD|T25658|Ups|Uros1	hydroxymethylbilane synthase	protein-coding	3.0	26.5	19.0	19.0	9.5	21.0
Merged-chr1-192087239-4	chr1	192086735	192087735	+	839.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011633, intron 1 of 9)	intron (NM_011633, intron 1 of 9)	5364.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11007620-2	chr16	11007120	11008120	+	839.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1278.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59033576-1	chr4	59033076	59034076	+	839.5	f0_balb.idr	Intergenic	Intergenic	-1580.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	4.5	0.0	0.0	4.0	9.0	4.0
Merged-chr12-111032051-2	chr12	111031551	111032551	+	839.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7747.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-105123511-2	chr9	105122982	105123982	+	839.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	8323.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	13.5	39.0	35.0	20.0	56.5	33.0
Merged-chr15-80260836-4	chr15	80260346	80261346	+	839.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175109, exon 4 of 4)	3' UTR (NM_175109, exon 4 of 4)	3460.0	NM_175109	66538.0	Mm.39485	NM_175109	ENSMUSG00000051518	Rps19bp1	2510038A11Rik|AI604923|S19BP	ribosomal protein S19 binding protein 1	protein-coding	1.5	2.0	1.0	1.5	0.0	1.0
Merged-chr14-65096354-2	chr14	65095854	65096854	+	839.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018788, intron 1 of 6)	intron (NM_018788, intron 1 of 6)	1752.0	NM_018788	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	2.0	4.0	4.0	3.5	3.0	3.0
Merged-chr15-41631956-2	chr15	41631456	41632456	+	839.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 2 of 17)	intron (NR_152565, intron 2 of 17)	-157039.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136346803-2	chr1	136346303	136347303	+	839.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347110)	promoter-TSS (NM_001347110)	-699.0	NM_001347110	67886.0	Mm.144143	NM_001081360	ENSMUSG00000041570	Camsap2	1600013L13Rik|4930541M15Rik|Camsap1l1|mKIAA1078	calmodulin regulated spectrin-associated protein family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-7995485-2	chr5	7994985	7995985	+	839.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	35013.0	NM_054098	117167.0	Mm.31403	NM_054098	ENSMUSG00000012428	Steap4	1110021O17Rik|AI481214|Tiarp|Tnfaip9	STEAP family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166496113-2	chr2	166495613	166496613	+	839.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR27|LTR|ERVK	48662.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-58836990-4	chr7	58836488	58837488	+	839.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	178786.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-125792763-6	chr2	125792302	125793302	+	839.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9932.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	12.5	31.0	15.0	13.0	36.0	15.0
Merged-chr15-96722462-4	chr15	96721965	96722965	+	839.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_Mus|LTR|ERVK	-22737.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134544299-4	chr6	134543805	134544805	+	839.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 1 of 22)	intron (NM_008514, intron 1 of 22)	22608.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	33.5	46.5	63.5	18.0	52.5	26.5
Merged-chr4-120381180-4	chr4	120380683	120381683	+	839.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24098.0	NM_001159630	29871.0	Mm.427014	NM_013883	ENSMUSG00000000085	Scmh1	AI315320|AI851618|Scml1|Scml3	sex comb on midleg homolog 1	protein-coding	4.5	1.0	0.0	2.0	6.0	2.0
Merged-chr5-64134181-4	chr5	64133728	64134728	+	839.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26032.0	NM_019636	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23187377-4	chr17	23186872	23187872	+	839.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357697, intron 3 of 5)	intron (NM_001357697, intron 3 of 5)	5856.0	NM_009555	22700.0	Mm.437934	NM_009555	ENSMUSG00000002617	Zfp40	CTfin12|NTfin12|Zfp-40	zinc finger protein 40	protein-coding	0.0	0.5	3.5	0.0	2.5	4.0
Merged-chr3-62496056-4	chr3	62495558	62496558	+	839.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028136, intron 5 of 24)	intron (NM_028136, intron 5 of 24)	10930.0	NM_028136	72162.0	Mm.224233	NM_028136	ENSMUSG00000027770	Dhx36	2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488	DEAH (Asp-Glu-Ala-His) box polypeptide 36	protein-coding	4.5	10.0	1.5	4.0	0.0	4.0
Merged-chr19-10449918-2	chr19	10449418	10450418	+	839.4166869999999	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173068, exon 11 of 11)	3' UTR (NM_173068, exon 11 of 11)	7529.0	NM_001111140	278795.0	Mm.490638	NM_001111140	ENSMUSG00000090291	Lrrc10b	Gm705|SerdinR	leucine rich repeat containing 10B	protein-coding	0.0	2.0	0.0	0.0	0.0	0.5
Merged-chr2-157426927-2	chr2	157426447	157427447	+	839.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 1 of 13)	GA-rich|Low_complexity|Low_complexity	2654.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	10.0	30.0	18.5	20.0	18.0	9.5
Merged-chr14-51090432-7	chr14	51089858	51090858	+	839.404785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021472)	promoter-TSS (NM_021472)	-719.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	76.0	146.5	114.0	44.5	185.0	120.5
Merged-chr15-51733750-5	chr15	51733230	51734230	+	839.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	131731.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	2.5	2.5	6.0	0.0	2.0	4.5
Merged-chr3-148795986-3	chr3	148795481	148796481	+	839.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	158654.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.5	0.0	0.5	0.0	0.5	0.0
Merged-chr5-99387065-3	chr5	99386565	99387565	+	839.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-134138.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103605851-3	chr3	103605352	103606352	+	839.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276676, intron 3 of 6)	intron (NM_001276676, intron 3 of 6)	29726.0	NM_001276681	54524.0	Mm.88818	NM_018800	ENSMUSG00000027849	Syt6	3110037A08Rik|AW048930|sytVI	synaptotagmin VI	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21216198-4	chr16	21215688	21216688	+	839.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010143, intron 3 of 15)	intron (NM_010143, intron 3 of 15)	11393.0	NM_010143	13845.0	Mm.6972	NM_010143	ENSMUSG00000005958	Ephb3	AW456895|Cek10|Etk2|HEK2|MDK5|Sek4|Tyro6	Eph receptor B3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73459367-4	chr13	73458937	73459937	+	839.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7946.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12644379-4	chr18	12643875	12644875	+	839.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028341, intron 1 of 13)	CpG	842.0	NM_028341	72747.0	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70376586-6	chr8	70376115	70377115	+	839.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016685, intron 8 of 18)	CpG-14088	3067.0	NM_016685	12845.0	Mm.45071	NM_016685	ENSMUSG00000031849	Comp	TSP5	cartilage oligomeric matrix protein	protein-coding	0.0	7.5	0.5	0.0	10.5	6.5
Merged-chr19-45651687-3	chr19	45651183	45652183	+	839.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013907, intron 1 of 8)	intron (NM_013907, intron 1 of 8)	8510.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-54361115-4	chr3	54360621	54361621	+	839.3583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198766)	promoter-TSS (NM_001198766)	14.0	NM_015784	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	9.0	25.0	36.0	9.0	25.0	33.0
Merged-chr12-80129845-3	chr12	80129373	80130373	+	839.357178	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033514, intron 2 of 2)	intron (NR_033514, intron 2 of 2)	2971.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120136466-2	chr2	120135966	120136966	+	839.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 2 of 5)	intron (NM_133838, intron 2 of 5)	18109.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-26864975-4	chr18	26864462	26865462	+	839.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1110805.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84267014-3	chr2	84266534	84267534	+	839.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	158232.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	16.0	2.5	28.5	0.0	6.0	5.5
Merged-chr6-113655005-3	chr6	113654514	113655514	+	839.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	16547.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-119458468-4	chr1	119457967	119458967	+	839.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36219.0	NM_008381	16324.0	Mm.3092	NM_008381	ENSMUSG00000037035	Inhbb	-	inhibin beta-B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-13055328-3	chr17	13054844	13055844	+	839.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3064.0	NM_001013832	436440.0	Mm.335670	NM_001013832	ENSMUSG00000071311	Gpr31b	12-HETER|GPR31c(t)|Gpr31|Gpr31c	G protein-coupled receptor 31, D17Leh66b region	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12768869-7	chr17	12768306	12769306	+	839.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010515, intron 1 of 47)	intron (NM_010515, intron 1 of 47)	900.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-120299480-3	chr13	120298961	120299961	+	839.3110960000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037925)	promoter-TSS (NM_001037925)	-931.0	NM_001037925	625360.0	Mm.327506	NM_001037925	ENSMUSG00000094796	BC147527	-	cDNA sequence BC147527	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102438410-4	chr11	102437865	102438865	+	839.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_199200, exon 8 of 8)	exon (NM_199200, exon 8 of 8)	8043.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69614203-4	chr11	69613718	69614718	+	839.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011367)	TTS (NM_011367)	3687.0	NM_011367	20415.0	Mm.1431	NM_011367	ENSMUSG00000005202	Shbg	ABP	sex hormone binding globulin	protein-coding	9.0	0.0	2.5	0.0	0.0	0.0
Merged-chr10-94587405-3	chr10	94586929	94587929	+	839.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172051, exon 4 of 4)	3' UTR (NM_172051, exon 4 of 4)	-1230.0	NR_106070	102466817.0		NR_106070	ENSMUSG00000098544	Mir7211	Gm27536|mmu-mir-7211	microRNA 7211	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36754375-3	chr1	36753821	36754821	+	839.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040290, intron 8 of 8)	ORR1C1|LTR|ERVL-MaLR	-7477.0	NM_009539	22637.0	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116633133-3	chr11	116632607	116633607	+	839.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6088.0	NM_172572	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	7.5	0.0	14.0	5.0	20.5	16.0
Merged-chr16-4469780-3	chr16	4469278	4470278	+	839.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49280.0	NM_009624	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132801621-2	chr4	132801121	132802121	+	839.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5257.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81300740-2	chr10	81300240	81301240	+	839.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	7777.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88102738-4	chr17	88102206	88103206	+	839.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22806.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46577672-4	chr18	46577177	46578177	+	839.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4a2|LINE|L1	-3144.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107025803-4	chr11	107025289	107026289	+	839.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2434.0	NM_001163473	69066.0	Mm.40679	NM_001163473	ENSMUSG00000078607	1810010H24Rik	-	RIKEN cDNA 1810010H24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107100946-4	chr3	107100480	107101480	+	839.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008417)	promoter-TSS (NM_008417)	-587.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	3.0	8.5	10.0	0.0	12.0	11.0
Merged-chr3-94602407-2	chr3	94601907	94602907	+	839.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19691.0	NM_029721	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	5.0	1.5	1.0	0.0	0.0	0.0
Merged-chr17-46888642-2	chr17	46888142	46889142	+	839.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1979.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-51510276-4	chr6	51509735	51510735	+	839.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13668.0	NM_001361582	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	2.0	6.5	9.5	2.0	6.5	4.0
Merged-chr1-165773299-2	chr1	165772799	165773799	+	839.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_149310, intron 4 of 4)	intron (NR_149310, intron 4 of 4)	9541.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101812116-3	chr13	101811607	101812607	+	839.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43890.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99009170-3	chr9	99008598	99009598	+	839.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080776, intron 7 of 7)	ID2|SINE|ID	22725.0	NM_001122851	23873.0	Mm.74605	NM_011810	ENSMUSG00000032463	Faim	-	Fas apoptotic inhibitory molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20149267-6	chr10	20148663	20149663	+	839.211121	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198635, intron 1 of 17)	CpG	243.0	NM_001198635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-135235815-3	chr6	135235296	135236296	+	839.1889039999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028982, exon 13 of 13)	3' UTR (NM_028982, exon 13 of 13)	12088.0	NM_001080552	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	18.5	3.5	3.0	12.0	39.0	16.0
Merged-chr6-38636891-8	chr6	38636529	38637529	+	839.1726070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033171, exon 1 of 5)	exon (NM_001033171, exon 1 of 5)	210.0	NM_001033171	74253.0	Mm.121859	NM_001033171	ENSMUSG00000071537	Klrg2	2310020F24Rik	killer cell lectin-like receptor subfamily G, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76344546-2	chr15	76344046	76345046	+	839.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_025567, intron 2 of 6)	intron (NM_025567, intron 2 of 6)	1023.0	NM_025567	66445.0	Mm.29196	NM_025567	ENSMUSG00000022551	Cyc1	2610002H19Rik|AA408921|Cyct1	cytochrome c-1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-7913729-2	chr17	7913229	7914229	+	839.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12271.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46531038-3	chr4	46530514	46531514	+	839.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029077, intron 2 of 5)	intron (NM_029077, intron 2 of 5)	-4887.0	NR_151695	105247126.0	Mm.477962	NR_151695		Gm16731	-	predicted gene, 16731	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106980654-2	chr11	106980158	106981158	+	839.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18867.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	0.0	2.0	0.0	1.0	0.0	0.0
Merged-chr11-71005429-2	chr11	71004929	71005929	+	839.1666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178367)	promoter-TSS (NM_178367)	-997.0	NM_178367	216877.0	Mm.35399	NM_178367	ENSMUSG00000040620	Dhx33	3110057P17Rik|9430096J02Rik|Ddx33	DEAH (Asp-Glu-Ala-His) box polypeptide 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-56575595-2	chr3	56575092	56576092	+	839.166626	f0_balb.idr|f1_balb.idr	Intergenic	GSAT_MM|Satellite|Satellite	-391891.0	NM_030595	26422.0	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-53594929-2	chr9	53594429	53595429	+	839.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_144784, intron 3 of 11)	B3|SINE|B2	15421.0	NM_144784	110446.0	Mm.293233	NM_144784	ENSMUSG00000032047	Acat1	6330585C21Rik|Acat	acetyl-Coenzyme A acetyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84662896-2	chr2	84662369	84663369	+	839.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145100, intron 4 of 4)	RSINE1|SINE|B4	3790.0	NM_001145100	100270744.0	Mm.393636	NM_001145100	ENSMUSG00000086598	Btbd18	Btbd18-ps|Gm13718	BTB (POZ) domain containing 18	protein-coding	0.0	1.0	0.5	0.0	2.0	0.5
Merged-chr16-4738904-2	chr16	4738404	4739404	+	839.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136066, intron 1 of 5)	intron (NM_001136066, intron 1 of 5)	-2709.0	NM_010443	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110830752-2	chr12	110830252	110831252	+	839.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011973, intron 2 of 11)	(GGA)n|Simple_repeat|Simple_repeat	10187.0	NM_011973	26448.0	Mm.140948	NM_011973	ENSMUSG00000056458	Mok	RAGE1|Rage|Stk30	MOK protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72294503-2	chr8	72294000	72295000	+	839.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-24562.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	17.0	71.0	59.5	24.0	73.5	38.5
Merged-chr7-80232055-2	chr7	80231555	80232555	+	839.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178752)	promoter-TSS (NM_178752)	750.0	NM_001291276	23991.0	Mm.30217	NM_011870	ENSMUSG00000030538	Cib1	Cibkip|Kip|Prkdcip	calcium and integrin binding 1 (calmyrin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-62933810-4	chr5	62933291	62934291	+	839.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	119968.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	12.0	15.5	22.0	2.0	4.0	2.0
Merged-chr18-74283065-4	chr18	74282533	74283533	+	839.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029424)	promoter-TSS (NR_029424)	-67.0	NM_028948	74453.0	Mm.182293	NM_028948	ENSMUSG00000035394	Cfap53	4933415I03Rik|Ccdc11	cilia and flagella associated protein 53	protein-coding	0.0	2.5	0.0	0.0	0.0	1.0
Merged-chr10-25411602-4	chr10	25411093	25412093	+	839.1375119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013511, intron 1 of 19)	intron (NM_013511, intron 1 of 19)	3225.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	19.0	7.5	9.0	11.0	5.0	9.0
Merged-chr18-24652789-4	chr18	24652298	24653298	+	839.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026779)	promoter-TSS (NM_026779)	-893.0	NM_026779	68591.0	Mm.28252	NM_026779	ENSMUSG00000039616	Mocos	1110018O12Rik|HMCS|MCS|MOS	molybdenum cofactor sulfurase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121463829-5	chr10	121463280	121464280	+	839.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	RMER19B|LTR|ERVK	12470.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	48.5	57.0	43.5	12.5	58.5	26.5
Merged-chr11-97050767-4	chr11	97050253	97051253	+	839.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081434)	promoter-TSS (NM_001081434)	-67.0	NM_001310509	71240.0	Mm.190450	NM_001081434	ENSMUSG00000038534	Osbpl7	4933437E18Rik	oxysterol binding protein-like 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19934749-6	chr10	19934293	19935293	+	839.055542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008580, exon 1 of 30)	exon (NM_008580, exon 1 of 30)	267.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	4.5	11.0	19.5	1.0	40.0	26.5
Merged-chr12-31610525-3	chr12	31610018	31611018	+	839.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007530, intron 5 of 6)	intron (NM_007530, intron 5 of 6)	24079.0	NM_007530	12033.0	Mm.242379	NM_007530	ENSMUSG00000020650	Bcap29	AW208404|Bap29	B cell receptor associated protein 29	protein-coding	10.0	3.0	2.5	3.0	4.0	15.5
Merged-chr13-83655158-3	chr13	83654662	83655662	+	839.0499880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347576, intron 8 of 10)	intron (NM_001347576, intron 8 of 10)	-66219.0	NR_152244	320203.0	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik|ECONEXIN|EyeLinc1|Visc-1	RIKEN cDNA C130071C03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-94266138-4	chr2	94265583	94266583	+	839.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4684.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr11-78349833-4	chr11	78349396	78350396	+	839.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011676)	TTS (NM_011676)	3186.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11628187-4	chr4	11627676	11628676	+	839.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48514.0	NM_001256142	100503583.0	Mm.249437	NM_001256142	ENSMUSG00000094595	Fsbp	-	fibrinogen silencer binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-74906164-4	chr14	74905677	74906677	+	839.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	41700.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39249201-4	chr18	39248690	39249690	+	839.037476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 17 of 21)	intron (NM_001361073, intron 17 of 21)	238055.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55194029-4	chr14	55193541	55194541	+	839.020874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27966.0	NM_027790	71412.0	Mm.85484	NM_027790	ENSMUSG00000022209	Dhrs2	5430405K24Rik|Hep27	dehydrogenase/reductase member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23900252-4	chr18	23899745	23900745	+	839.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-54443.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6734868-2	chr17	6734368	6735368	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183368, intron 6 of 8)	intron (NM_183368, intron 6 of 8)	29038.0	NM_183368	83672.0	Mm.442201	NM_031395	ENSMUSG00000041831	Sytl3	A430092N21|Slp3|Slp3-a|Slp3-b|mFLJ00307	synaptotagmin-like 3	protein-coding	1.5	0.5	0.0	4.0	1.5	0.0
Merged-chr7-81343222-2	chr7	81342722	81343722	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009092, intron 4 of 4)	intron (NM_009092, intron 4 of 4)	2012.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34195884-3	chr19	34195389	34196389	+	839.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	2955.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	8.0	23.0	20.5	15.5	8.0	25.0
Merged-chr8-84668088-2	chr8	84667420	84668420	+	839.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5068.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.5	0.0	2.0	0.0	0.0	0.0
Merged-chr1-138157112-2	chr1	138156612	138157612	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	18014.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-111141217-1	chr5	111140717	111141717	+	839.0	f0_balb.idr	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	137073.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	30.0	62.0	41.0	55.5	54.5	41.0
Merged-chr17-48300459-4	chr17	48300018	48301018	+	839.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033405, exon 1 of 5)	5' UTR (NM_001033405, exon 1 of 5)	480.0	NM_001360121	328833.0	Mm.329104	NM_001033405	ENSMUSG00000071068	Treml2	AW049306|Gm750|Tlt2	triggering receptor expressed on myeloid cells-like 2	protein-coding	7.5	10.5	7.0	10.0	4.0	6.0
Merged-chr7-43583064-2	chr7	43582564	43583564	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357769, intron 1 of 3)	intron (NM_001357769, intron 1 of 3)	3478.0	NM_001357769	210105.0	Mm.234422	NM_172482	ENSMUSG00000030469	Zfp719	8030458J18|9430094P17Rik|C630016O21Rik|mszf6	zinc finger protein 719	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89322642-2	chr3	89322142	89323142	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010108, intron 1 of 4)	intron (NM_010108, intron 1 of 4)	237.0	NM_010108	13638.0	Mm.331159	NM_010108	ENSMUSG00000028039	Efna3	AW494418|EFL-2|Ehk1-L|Epl3|LERK-3	ephrin A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8974164-4	chr10	8973677	8974677	+	839.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-88107.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.0	0.0	8.5	0.0	8.5	5.5
Merged-chr3-152464493-3	chr3	152464031	152465031	+	839.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081277, intron 13 of 13)	intron (NM_001081277, intron 13 of 13)	67847.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	1.5	13.5	2.0	7.5	0.0	4.5
Merged-chr1-157433604-1	chr1	157433104	157434104	+	839.0	f0_balb.idr	Intergenic	Intergenic	-21009.0	NM_177644	226525.0	Mm.235028	NM_177644	ENSMUSG00000070565	Rasal2	6530401P13|A330066M24Rik	RAS protein activator like 2	protein-coding	7.0	3.0	4.5	2.0	0.0	0.0
Merged-chr13-112395971-2	chr13	112395471	112396471	+	839.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68099.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45120292-2	chr2	45119792	45120792	+	839.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-2850.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57907387-2	chr9	57906887	57907887	+	839.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEd|LINE|L1	-3599.0	NM_027086	69459.0	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122819778-2	chr10	122819278	122820278	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 4 of 9)	intron (NM_001110218, intron 4 of 9)	140463.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	5.5	5.5	8.0	4.0	3.5	1.0
Merged-chr5-134541086-3	chr5	134540581	134541581	+	839.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039162, intron 1 of 15)	intron (NM_001039162, intron 1 of 15)	11353.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51755682-2	chr11	51755182	51756182	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290785, intron 1 of 22)	intron (NM_001290785, intron 1 of 22)	1152.0	NM_001290785	77371.0	Mm.33878	NM_175255	ENSMUSG00000036391	Sec24a	-	Sec24 related gene family, member A (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-23144394-2	chr19	23143894	23144894	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010638, intron 1 of 1)	intron (NM_010638, intron 1 of 1)	3168.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-28506914-2	chr11	28506464	28507464	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181577, intron 2 of 4)	intron (NM_181577, intron 2 of 4)	77360.0	NM_001166661	216613.0	Mm.93759	NM_181577	ENSMUSG00000032878	Ccdc85a	-	coiled-coil domain containing 85A	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr10-67743083-3	chr10	67742585	67743585	+	839.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	169577.0	NM_178679	216049.0	Mm.268346	NM_178679	ENSMUSG00000037855	Zfp365	AI839779|AV340892|DBZ|Su48|Znf365|talanin	zinc finger protein 365	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97300858-2	chr7	97300358	97301358	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 5 of 9)	intron (NM_001162477, intron 5 of 9)	25106.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-66815465-2	chr1	66814965	66815965	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357156, intron 1 of 14)	intron (NM_001357156, intron 1 of 14)	2130.0	NM_177645	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167709191-2	chr2	167708691	167709691	+	839.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18014.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84221877-2	chr8	84221332	84222332	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172503, intron 10 of 13)	B1_Mus1|SINE|Alu	-12925.0	NR_037294	100526528.0		NR_037294	ENSMUSG00000105458	Mir3074-2	mir-3074-2|mmu-mir-3074-2	microRNA 3074-2	ncRNA	5.0	5.5	2.0	6.5	8.0	7.5
Merged-chr12-85588781-3	chr12	85588286	85589286	+	839.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10319.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16214740-1	chr7	16214240	16215240	+	839.0	f1_balb.idr	intron (NM_027883, intron 4 of 16)	intron (NM_027883, intron 4 of 16)	7253.0	NM_001285931	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	4.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53289004-3	chr15	53288510	53289510	+	839.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	57173.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31600052-2	chr15	31599552	31600552	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007637, intron 1 of 10)	intron (NM_007637, intron 1 of 10)	1487.0	NM_001348035	12465.0	Mm.282158	NM_007637	ENSMUSG00000022234	Cct5	CCT-epsilon|Ccte|TCP-1-epsilon|TCPE|mKIAA0098	chaperonin containing Tcp1, subunit 5 (epsilon)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86481617-2	chr17	86481117	86482117	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 5 of 14)	intron (NM_011104, intron 5 of 14)	-194439.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6007357-2	chr17	6006857	6007857	+	839.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290698)	promoter-TSS (NM_001290698)	-223.0	NM_001290698	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-83857977-4	chr10	83857484	83858484	+	839.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamRep4096|DNA|hAT?	135119.0	NM_001145198	69784.0	Mm.271188	NM_001145198	ENSMUSG00000087651	1500009L16Rik	2700050C19Rik|OCC-1	RIKEN cDNA 1500009L16 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26781024-4	chr17	26780541	26781541	+	839.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172149)	promoter-TSS (NM_172149)	-38.0	NM_172149	224630.0	Mm.21795	NM_172149	ENSMUSG00000024191	Bnip1	2010005M06Rik|5930429G21Rik|Sec20	BCL2/adenovirus E1B interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24584683-1	chr17	24584183	24585183	+	839.0	f0_balb.idr	intron (NM_013630, intron 26 of 45)	Tigger6a|DNA|TcMar-Tigger	34733.0	NM_013630	18763.0	Mm.30435	NM_013630	ENSMUSG00000032855	Pkd1	PC1|mFLJ00285	polycystin 1, transient receptor poteintial channel interacting	protein-coding	28.5	13.5	21.0	20.0	26.0	29.0
Merged-chr2-163438558-3	chr2	163437977	163438977	+	839.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144891)	promoter-TSS (NM_144891)	1.0	NR_153379	228858.0	Mm.102080	NM_144891	ENSMUSG00000017943	Gdap1l1	Gdap1l	ganglioside-induced differentiation-associated protein 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-140976941-2	chr7	140976441	140977441	+	839.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	8865.0	NM_001360728	68713.0	Mm.175661	NM_026820	ENSMUSG00000025491	Ifitm1	1110036C17Rik|DSPA2a|Mil-2|Mil2	interferon induced transmembrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171852930-1	chr1	171852430	171853430	+	839.0	f1_balb.idr	3' UTR (NM_001252472, exon 3 of 3)	3' UTR (NM_001252472, exon 3 of 3)	13233.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	18.0	29.5	25.5	9.5	9.5	13.0
Merged-chr2-133498517-2	chr2	133498017	133499017	+	839.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53642.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23955247-1	chr17	23954747	23955747	+	839.0	f1_balb.idr	promoter-TSS (NM_001077421)	promoter-TSS (NM_001077421)	26.0	NM_001077421	638345.0	Mm.46428	NM_001077421	ENSMUSG00000024125	Sbpl	2310068J22Rik	spermine binding protein-like	protein-coding	0.0	0.0	3.0	1.0	1.5	5.5
Merged-chr4-95769719-2	chr4	95769219	95770219	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029347, intron 8 of 10)	intron (NM_029347, intron 8 of 10)	190298.0	NM_029347	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134492016-3	chr5	134491471	134492471	+	839.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039162, intron 14 of 15)	intron (NM_001039162, intron 14 of 15)	-35255.0	NM_001081464	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97930656-3	chr3	97930181	97931181	+	839.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033779, intron 1 of 1)	intron (NM_001033779, intron 1 of 1)	508.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36513318-2	chr1	36512818	36513818	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039551, intron 1 of 8)	intron (NM_001039551, intron 1 of 8)	1451.0	NM_053186	94218.0	Mm.256323	NM_053186	ENSMUSG00000001138	Cnnm3	Acdp3|Clp3|mACDP3	cyclin M3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71001294-2	chr17	71000794	71001794	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026064, intron 1 of 3)	intron (NM_026064, intron 1 of 3)	1239.0	NM_026064	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	18.0	11.5	6.5	11.0	11.5	9.5
Merged-chr18-58509801-2	chr18	58509301	58510301	+	839.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46439.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110655920-2	chr9	110655377	110656377	+	839.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028312)	promoter-TSS (NM_028312)	-626.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	3.5	0.5	1.5	0.0	0.5	1.0
Merged-chr17-45548431-2	chr17	45547931	45548931	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013749, intron 1 of 2)	intron (NM_001013749, intron 1 of 2)	1246.0	NM_001013749	210573.0	Mm.329064	NM_001013749	ENSMUSG00000096847	Tmem151b	Gm323	transmembrane protein 151B	protein-coding	0.0	1.0	0.0	1.0	0.0	0.5
Merged-chr1-59476430-2	chr1	59475927	59476927	+	839.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5720.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	12.0	28.5	18.0	0.5	0.0	8.5
Merged-chr4-128617770-5	chr4	128617185	128618185	+	839.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_205823, exon 1 of 1)	exon (NM_205823, exon 1 of 1)	934.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	17.0	46.0	22.5	3.5	21.5	27.5
Merged-chr19-3379898-2	chr19	3379398	3380398	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 15 of 18)	intron (NM_013495, intron 15 of 18)	-8959.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130962090-2	chr2	130961580	130962580	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009730, intron 10 of 28)	intron (NM_009730, intron 10 of 28)	55585.0	NM_009730	11990.0	Mm.119936	NM_009730	ENSMUSG00000027312	Atrn	AW558010|Mgca|mg	attractin	protein-coding	6.0	6.5	2.0	6.0	2.0	2.0
Merged-chr11-69171808-2	chr11	69171277	69172277	+	839.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14705.0	NM_009659	11686.0	Mm.340329	NM_009659	ENSMUSG00000032807	Alox12b	12R-LOX|Aloxe2|e-LOX2	arachidonate 12-lipoxygenase, 12R type	protein-coding	0.0	2.5	1.0	2.5	1.0	1.0
Merged-chr17-35915189-1	chr17	35914689	35915689	+	839.0	f1_c57bl6.idr	intron (NM_001361455, intron 1 of 5)	B2_Mm1t|SINE|B2	1251.0	NM_001361455	66973.0	Mm.29484	NM_025878	ENSMUSG00000024436	Mrps18b	2400002C15Rik|MRP-S18-2|S18mt-b	mitochondrial ribosomal protein S18B	protein-coding	0.0	1.0	0.0	0.0	0.0	5.5
Merged-chr17-34315533-1	chr17	34315033	34316033	+	839.0	f1_balb.idr	intron (NM_010382, intron 4 of 5)	intron (NM_010382, intron 4 of 5)	9666.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	2.0	35.0	10.5	28.0	21.0	16.0
Merged-chr10-85188687-2	chr10	85188187	85189187	+	839.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3633.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141636940-2	chr7	141636440	141637440	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330001, intron 31 of 33)	intron (NM_001330001, intron 31 of 33)	16239.0	NR_106030	102466798.0		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-42857706-4	chr17	42857244	42858244	+	838.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009847, intron 1 of 17)	intron (NM_009847, intron 1 of 17)	18680.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	24.0	56.0	35.5	19.5	52.5	14.0
Merged-chr10-93262356-4	chr10	93261808	93262808	+	838.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282967, intron 2 of 3)	intron (NM_001282967, intron 2 of 3)	48851.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	3.5	13.5	12.0	8.5	21.5	8.0
Merged-chr7-25251660-6	chr7	25251205	25252205	+	838.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010155)	promoter-TSS (NM_010155)	-947.0	NM_010155	13875.0	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-57239301-4	chr2	57238820	57239820	+	838.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010274, intron 1 of 16)	intron (NM_010274, intron 1 of 16)	938.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182140552-4	chr1	182140048	182141048	+	838.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15811.0	NM_012058	27058.0	Mm.273196	NM_012058	ENSMUSG00000026511	Srp9	9kDa	signal recognition particle 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34593148-2	chr17	34592648	34593648	+	838.9285890000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_017463, intron 1 of 8)	intron (NM_017463, intron 1 of 8)	677.0	NM_017463	18515.0	Mm.390957	NM_017463	ENSMUSG00000034673	Pbx2	AU043397|G17	pre B cell leukemia homeobox 2	protein-coding	2.0	2.5	4.5	0.0	4.5	1.0
Merged-chr8-25068287-4	chr8	25067760	25068760	+	838.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 3 of 11)	intron (NM_031257, intron 3 of 11)	-29298.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	13.5	13.5	6.5	12.0	30.0	12.5
Merged-chr11-76088663-4	chr11	76088159	76089159	+	838.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026664, intron 13 of 21)	intron (NM_026664, intron 13 of 21)	-60877.0	NM_029658	76566.0	Mm.34131	NM_029658	ENSMUSG00000020846	Rflnb	1500005K14Rik|Fam101b|RefilinB|cfm	refilin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8769499-4	chr10	8769001	8770001	+	838.895874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	116569.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	18.5	20.5	14.5	8.0	37.5	20.0
Merged-chr5-28094095-3	chr5	28093620	28094620	+	838.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22708.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96878692-3	chr11	96878162	96879162	+	838.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	28269.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	6.5	43.5	22.0	6.0	19.0	10.5
Merged-chr11-118356396-3	chr11	118355895	118356895	+	838.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011594)	promoter-TSS (NM_011594)	-984.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45747601-4	chr19	45747018	45748018	+	838.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008723)	TTS (NM_008723)	2045.0	NM_008723	18150.0	Mm.1406	NM_008723	ENSMUSG00000056209	Npm3	Nub1	nucleoplasmin 3	protein-coding	0.0	1.0	0.0	0.0	1.0	1.5
Merged-chr9-114794702-4	chr9	114794194	114795194	+	838.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027294, intron 2 of 3)	intron (NM_027294, intron 2 of 3)	-12701.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	104.5	241.5	186.5	57.0	138.0	122.5
Merged-chr10-62489454-2	chr10	62488954	62489954	+	838.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2649.0	NM_001358543	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103048505-4	chr14	103048002	103049002	+	838.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008392, intron 1 of 4)	intron (NM_008392, intron 1 of 4)	1490.0	NM_008392	16365.0	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56930228-4	chr17	56929716	56930716	+	838.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022328, intron 1 of 11)	intron (NM_022328, intron 1 of 11)	5172.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32207058-4	chr12	32206560	32207560	+	838.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146200, intron 1 of 10)	intron (NM_001146200, intron 1 of 10)	1278.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	20.0	7.5	8.5	12.5	1.5	20.5
Merged-chr8-94186831-4	chr8	94186329	94187329	+	838.854187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7740.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53225768-2	chr4	53225268	53226268	+	838.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20428.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170152346-2	chr2	170151846	170152846	+	838.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9671.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152575142-4	chr1	152574650	152575650	+	838.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	50067.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52793740-4	chr13	52793228	52794228	+	838.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36523.0	NR_027893	105404.0	Mm.184173	NR_027893		BB123696	-	expressed sequence BB123696	ncRNA	0.0	17.5	0.0	0.5	4.0	1.0
Merged-chr19-5560183-3	chr19	5559668	5560668	+	838.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019935, intron 1 of 3)	CpG	407.0	NM_019935	18426.0	Mm.280225	NM_019935	ENSMUSG00000024922	Ovol1	BB147136|Ovo1|movo1	ovo like zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-130322802-3	chr10	130322295	130323295	+	838.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183264)	promoter-TSS (NM_183264)	-57.0	NM_183264	67596.0	Mm.131264	NM_183264	ENSMUSG00000034833	Tespa1	5830405N20Rik|A430001F24Rik|AI450549	thymocyte expressed, positive selection associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-12422510-4	chr7	12422018	12423018	+	838.830383	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033820)	promoter-TSS (NM_001033820)	-27.0	NM_001033820	619331.0	Mm.361832	NM_001033820	ENSMUSG00000034071	Zfp551	9630004E07Rik|Znf551	zinc fingr protein 551	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-66909378-4	chr10	66908884	66909884	+	838.825012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11000.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8945299-3	chr10	8944797	8945797	+	838.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59227.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.5	3.0	0.0	0.0	0.0	0.5
Merged-chr2-79499491-4	chr2	79498998	79499998	+	838.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42862.0	NM_010894	18012.0	Mm.4636	NM_010894	ENSMUSG00000034701	Neurod1	BETA2|BHF-1|Nd1|Neurod|bHLHa3	neurogenic differentiation 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17951040-4	chr10	17950512	17951512	+	838.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2945.0	NM_001033432	380629.0	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69037891-3	chr11	69037387	69038387	+	838.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Thr-ACY|tRNA|tRNA	-7750.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126230556-3	chr7	126230058	126231058	+	838.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131046, intron 2 of 4)	RMER1C|Other|Other	7046.0	NR_131047	76728.0	Mm.76920	NR_131046	ENSMUSG00000108676	1700123J17Rik	Gm44875	RIKEN cDNA 1700123J17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-99440066-3	chr6	99439570	99440570	+	838.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347345, intron 1 of 19)	intron (NM_001347345, intron 1 of 19)	-4725.0	NM_053202	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-100596499-3	chr3	100595991	100596991	+	838.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010763, intron 8 of 12)	intron (NM_010763, intron 8 of 12)	88982.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113639429-2	chr5	113638929	113639929	+	838.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359060, intron 2 of 4)	MIR|SINE|MIR	4174.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34180089-4	chr8	34179592	34180592	+	838.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13380.0	NR_105820	102465211.0		NR_105820	ENSMUSG00000098785	Mir6395	Gm27561|mmu-mir-6395	microRNA 6395	ncRNA	0.5	5.5	3.5	0.0	11.0	1.0
Merged-chr9-75313545-2	chr9	75313045	75314045	+	838.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138719)	promoter-TSS (NM_138719)	-523.0	NR_073186	14697.0	Mm.17604	NM_010313	ENSMUSG00000032192	Gnb5	GBS|Gbeta5|flr	guanine nucleotide binding protein (G protein), beta 5	protein-coding	1.5	6.0	7.0	0.0	0.0	1.0
Merged-chr4-41469314-4	chr4	41468810	41469810	+	838.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025539, intron 1 of 2)	intron (NM_025539, intron 1 of 2)	4162.0	NM_025539	66401.0	Mm.28574	NM_025539	ENSMUSG00000028443	Nudt2	2310051L06Rik|AA939917|APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-81518838-4	chr17	81518362	81519362	+	838.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	219525.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128063673-2	chr6	128063173	128064173	+	838.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356301, intron 1 of 7)	intron (NM_001356301, intron 1 of 7)	79905.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	2.0	5.0	0.5	3.0	0.0	2.0
Merged-chr5-33653871-2	chr5	33653371	33654371	+	838.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001356983, exon 4 of 4)	3' UTR (NM_001356983, exon 4 of 4)	-1297.0	NM_009193	20492.0	Mm.4172	NM_009193	ENSMUSG00000004642	Slbp	-	stem-loop binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122064658-4	chr14	122064001	122065001	+	838.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	29827.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	4.0	12.0	1.5	11.0	8.0	0.0
Merged-chr14-7977672-4	chr14	7977168	7978168	+	838.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007870, intron 4 of 7)	intron (NM_007870, intron 4 of 7)	16514.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-103366739-4	chr9	103366199	103367199	+	838.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134426)	promoter-TSS (NM_001134426)	-919.0	NM_175565	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40229037-4	chr9	40228534	40229534	+	838.729126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36718.0	NM_030713	80902.0	Mm.132196	NM_030713	ENSMUSG00000025602	Zfp202	C130037E22Rik|Znf202	zinc finger protein 202	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38432697-4	chr6	38432281	38433281	+	838.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1144.0	NM_177185	320538.0	Mm.302831	NM_177185	ENSMUSG00000038538	Ubn2	2900060J04Rik|6030408G03Rik|BC060116|D130059P03Rik|mKIAA2030	ubinuclein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-114076153-3	chr13	114075669	114076669	+	838.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 4 of 4)	MER119|DNA|hAT-Charlie	75423.0	NR_045836	319803.0	Mm.386896	NM_177004	ENSMUSG00000114213	A430090L17Rik	-	RIKEN cDNA A430090L17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105991021-4	chr8	105990535	105991535	+	838.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176913, intron 1 of 11)	intron (NM_176913, intron 1 of 11)	738.0	NM_001301204	319446.0	Mm.248357	NM_176913	ENSMUSG00000053687	Dpep2	F630103D06Rik|MBD-2	dipeptidase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-52331575-4	chr1	52331062	52332062	+	838.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98330.0	NM_001113383	14660.0	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	1.0	0.0	0.0	8.5	0.5	3.5
Merged-chr4-134287793-3	chr4	134287312	134288312	+	838.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163794)	promoter-TSS (NM_001163794)	34.0	NM_146156	230809.0	Mm.22778	NM_146156	ENSMUSG00000050890	Pdik1l	BC027088|stk35l2	PDLIM1 interacting kinase 1 like	protein-coding	17.5	97.5	63.5	19.0	59.0	47.0
Merged-chr1-166843561-3	chr1	166843098	166844098	+	838.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	156132.0	NR_037988	100503962.0	Mm.216842	NR_037988	ENSMUSG00000102548	Gm16701	-	predicted gene, 16701	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-142153725-3	chr4	142153184	142154184	+	838.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109684, intron 3 of 6)	intron (NM_001109684, intron 3 of 6)	56524.0	NM_144531	71529.0	Mm.255986	NM_144531	ENSMUSG00000040606	Kazn	2310007B04Rik|9030409G11Rik|AI256607|AI666764|AW061099|Kaz|Kazrin	kazrin, periplakin interacting protein	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr2-13479808-3	chr2	13479311	13480311	+	838.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081084, intron 6 of 66)	intron (NM_001081084, intron 6 of 66)	12065.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-44273659-3	chr12	44273157	44274157	+	838.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026164, intron 1 of 9)	intron (NM_026164, intron 1 of 9)	4503.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	4.5	8.5	3.5	3.5	7.0	3.5
Merged-chr2-144044442-2	chr2	144043942	144044942	+	838.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001044750, intron 1 of 2)	intron (NM_001044750, intron 1 of 2)	11340.0	NM_207275	403171.0	Mm.389362	NM_207275	ENSMUSG00000037307	Banf2	4930517K23Rik|Baf-L|Baf-like|Gm115	barrier to autointegration factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-130884230-3	chr3	130883784	130884784	+	838.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-153886.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155140262-4	chr1	155139782	155140782	+	838.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008209, intron 1 of 5)	intron (NM_008209, intron 1 of 5)	6532.0	NM_001355063	15064.0	Mm.7580	NM_008209	ENSMUSG00000026471	Mr1	H2ls	major histocompatibility complex, class I-related	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-33380539-3	chr19	33380036	33381036	+	838.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146342, intron 2 of 4)	intron (NM_001146342, intron 2 of 4)	11759.0	NM_001167818	67795.0	Mm.204591	NM_001146342	ENSMUSG00000071573	Rnls	6530404N21Rik|AI452315|AW060440|C10orf59	renalase, FAD-dependent amine oxidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30796159-2	chr2	30795659	30796659	+	838.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_198000, exon 6 of 7)	exon (NM_198000, exon 6 of 7)	5578.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53890975-2	chr11	53890475	53891475	+	838.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011396, intron 1 of 9)	intron (NM_011396, intron 1 of 9)	728.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62697625-3	chr4	62697127	62698127	+	838.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134257, intron 12 of 15)	intron (NM_134257, intron 12 of 15)	23653.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69396954-6	chr11	69396609	69397609	+	838.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030083)	TTS (NM_030083)	1125.0	NM_025915	67020.0	Mm.390406	NM_025915	ENSMUSG00000045377	Tmem88	2600017H02Rik	transmembrane protein 88	protein-coding	7.0	20.0	5.0	4.5	18.5	5.5
Merged-chr11-115173676-4	chr11	115173204	115174204	+	838.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012030, intron 1 of 5)	intron (NM_012030, intron 1 of 5)	10363.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	13.0	4.0	8.0	0.0	13.0	3.0
Merged-chr4-142081214-5	chr4	142080732	142081732	+	838.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	GC_rich|Low_complexity|Low_complexity	-3066.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29259688-4	chr17	29259191	29260191	+	838.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026845, intron 2 of 3)	intron (NM_026845, intron 2 of 3)	4280.0	NM_026845	68816.0	Mm.328928	NM_026845	ENSMUSG00000024007	Ppil1	1110060O10Rik|AI327391|Cypl1	peptidylprolyl isomerase (cyclophilin)-like 1	protein-coding	21.0	6.0	13.5	1.5	10.5	2.5
Merged-chr7-102042399-4	chr7	102041901	102042901	+	838.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 2 of 8)	MIR|SINE|MIR	22764.0	NM_029211	75212.0	Mm.101141	NM_029211	ENSMUSG00000070426	Rnf121	4930544L10Rik	ring finger protein 121	protein-coding	12.0	0.5	4.5	5.5	3.5	2.5
Merged-chr11-4240489-3	chr11	4239997	4240997	+	838.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001013365, exon 3 of 3)	3' UTR (NM_001013365, exon 3 of 3)	3712.0	NM_001013365	18413.0	Mm.131422	NM_001013365	ENSMUSG00000058755	Osm	OncoM	oncostatin M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100615736-3	chr5	100615241	100616241	+	838.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43536.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	10.0	12.0	3.5	1.5	12.0	11.0
Merged-chr18-50065167-3	chr18	50064713	50065713	+	838.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134131, intron 1 of 1)	intron (NM_134131, intron 1 of 1)	-11551.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	32.0	53.0	34.5	18.0	17.0	26.5
Merged-chr11-60209343-3	chr11	60208819	60209819	+	838.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358315, intron 1 of 18)	intron (NM_001358315, intron 1 of 18)	1152.0	NM_001358314	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-76902928-3	chr8	76902435	76903435	+	838.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083906, intron 1 of 8)	intron (NM_001083906, intron 1 of 8)	427.0	NM_001083906	110784.0	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126830104-3	chr8	126829598	126830598	+	838.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18922.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	6.0	30.0	29.0	6.0	30.5	29.0
Merged-chr16-93906457-4	chr16	93905957	93906957	+	838.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028083)	TTS (NM_028083)	22556.0	NM_028083	110749.0	Mm.274222	NM_028083	ENSMUSG00000022945	Chaf1b	2600017H24Rik|C76145|CAF-I p60|CAF-Ip60|CAF1|CAF1A|CAF1P60|MPHOSPH7	chromatin assembly factor 1, subunit B (p60)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86695211-4	chr4	86694662	86695662	+	838.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25103.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	0.0	0.0	0.0	2.0	0.0	0.0
Merged-chr2-163433998-3	chr2	163433514	163434514	+	838.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4453.0	NM_144891	228858.0	Mm.102080	NM_144891	ENSMUSG00000017943	Gdap1l1	Gdap1l	ganglioside-induced differentiation-associated protein 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44544241-4	chr11	44543765	44544765	+	838.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 4 of 5)	RSINE1|SINE|B4	24888.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-110668222-4	chr4	110667666	110668666	+	838.516663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284190, intron 3 of 12)	intron (NM_001284190, intron 3 of 12)	270468.0	NM_030231	78933.0	Mm.435620	NM_030231	ENSMUSG00000061298	Agbl4	4930578N11Rik|4931433A01Rik	ATP/GTP binding protein-like 4	protein-coding	0.0	0.5	0.0	2.0	0.0	0.0
Merged-chr7-145248012-2	chr7	145247513	145248513	+	838.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132644, intron 24 of 24)	B4|SINE|B4	35998.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	8.5	0.0	5.0	5.0	1.5	5.0
Merged-chr9-54502771-2	chr9	54502271	54503271	+	838.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1145.0	NM_172771	235380.0	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67464537-2	chr18	67464037	67465037	+	838.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144867)	promoter-TSS (NM_144867)	-312.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59824178-2	chr13	59823678	59824678	+	838.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-1031.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70543806-2	chr8	70543306	70544306	+	838.5	f0_balb.idr|f1_balb.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	4131.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	85.5	170.0	153.0	127.5	237.5	141.0
Merged-chr2-180209547-2	chr2	180209047	180210047	+	838.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081171, intron 2 of 78)	B3|SINE|B2	16312.0	NM_001081171	16776.0	Mm.4339	NM_001081171	ENSMUSG00000015647	Lama5	AA408760|AA408762|AI853660|[a]5|laminin-511|mKIAA0533	laminin, alpha 5	protein-coding	1.0	0.0	0.0	4.0	0.0	0.0
Merged-chr6-29170698-1	chr6	29170198	29171198	+	838.5	f1_c57bl6.idr	exon (NM_001101443, exon 5 of 5)	exon (NM_001101443, exon 5 of 5)	-5974.0	NM_133925	68272.0	Mm.40802	NM_026650	ENSMUSG00000029701	Rbm28	2810480G15Rik|AI503051	RNA binding motif protein 28	protein-coding	0.0	0.0	4.0	0.0	0.0	4.0
Merged-chr10-24223789-2	chr10	24223289	24224289	+	838.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_021509, exon 1 of 12)	exon (NM_021509, exon 1 of 12)	272.0	NM_021509	59012.0	Mm.285934	NM_021509	ENSMUSG00000020000	Moxd1	3230402N08Rik|MNCb-5203	monooxygenase, DBH-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121682625-2	chr3	121682125	121683125	+	838.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033814, intron 5 of 5)	intron (NM_001033814, intron 5 of 5)	11862.0	NM_001033814	619318.0	Mm.371258	NM_001033814	ENSMUSG00000074248	4930432M17Rik	-	RIKEN cDNA 4930432M17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102099814-2	chr7	102099314	102100314	+	838.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007491, intron 1 of 4)	intron (NM_007491, intron 1 of 4)	415.0	NR_111935	11875.0	Mm.2816	NM_007491	ENSMUSG00000070424	Art5	ARTC5|Yac-2	ADP-ribosyltransferase 5	protein-coding	10.0	6.0	1.5	0.0	1.0	9.5
Merged-chr2-168979927-4	chr2	168979449	168980449	+	838.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	1680.0	NR_040326	75508.0	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34036395-2	chr17	34035895	34036895	+	838.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001205216, exon 6 of 10)	exon (NM_001205216, exon 6 of 10)	-2743.0	NM_009926	12815.0	Mm.20230	NM_009926	ENSMUSG00000024330	Col11a2	-	collagen, type XI, alpha 2	protein-coding	0.0	1.0	7.5	0.0	0.0	1.5
Merged-chr14-21071877-2	chr14	21071377	21072377	+	838.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134079, intron 1 of 10)	MIR3|SINE|MIR	-4275.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19315421-2	chr7	19314921	19315921	+	838.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-5376.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-46456931-2	chr12	46456431	46457431	+	838.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	361844.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108561070-3	chr9	108560577	108561577	+	838.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001114119)	TTS (NM_001114119)	576.0	NM_011830	23918.0	Mm.6065	NM_011830	ENSMUSG00000062867	Impdh2	IMPD	inosine monophosphate dehydrogenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77886545-2	chr10	77886045	77887045	+	838.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001287074, exon 12 of 12)	exon (NM_001287074, exon 12 of 12)	-6875.0	NR_015547	75188.0	Mm.348012	NM_029200	ENSMUSG00000096573	1700009J07Rik	4930535B06Rik	RIKEN cDNA 1700009J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73597963-2	chr15	73597463	73598463	+	838.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357747, intron 2 of 7)	intron (NM_001357747, intron 2 of 7)	-1437.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117461674-2	chr8	117461174	117462174	+	838.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163262)	TTS (NM_001163262)	2409.0	NR_106046	102465653.0		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12394448-2	chr13	12393948	12394948	+	838.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144835)	promoter-TSS (NM_144835)	-927.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31053480-2	chr3	31052980	31053980	+	838.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008857)	TTS (NM_008857)	14514.0	NR_105975	102465610.0		NR_105975	ENSMUSG00000098890	Mir7008	Gm27752|mmu-mir-7008	microRNA 7008	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4044706-4	chr18	4044211	4045211	+	838.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121121.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119906232-2	chr11	119905732	119906732	+	838.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 2)	intron (NR_039557, intron 2 of 2)	-7578.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	1.5	0.0	0.0	0.0	0.0	0.5
Merged-chr7-25121275-2	chr7	25120775	25121775	+	838.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163556, intron 1 of 13)	intron (NM_001163556, intron 1 of 13)	11185.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106022784-2	chr8	106022284	106023284	+	838.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301176, intron 2 of 14)	intron (NM_001301176, intron 2 of 14)	-11298.0	NM_028038	71986.0	Mm.307515	NM_028038	ENSMUSG00000045538	Ddx28	2410004K13Rik|AI449652|Mddx28	DEAD (Asp-Glu-Ala-Asp) box polypeptide 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107963173-2	chr9	107962673	107963673	+	838.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011634, intron 9 of 14)	intron (NM_011634, intron 9 of 14)	12210.0	NM_011634	22036.0	Mm.297870	NM_011634	ENSMUSG00000032586	Traip	Trip	TRAF-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10868235-2	chr16	10867735	10868735	+	838.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33176.0	NM_001162932	223970.0	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47179045-6	chr19	47178496	47179496	+	838.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021360, exon 1 of 6)	5' UTR (NM_021360, exon 1 of 6)	176.0	NM_021360	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	0.0	0.0	0.0	0.0	1.0	0.5
Merged-chr5-117509008-2	chr5	117508555	117509555	+	838.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 3 of 19)	B4A|SINE|B4	95053.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	6.0	3.5	3.5	0.0	8.5	0.0
Merged-chr13-9340462-2	chr13	9339962	9340962	+	838.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	63937.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94950219-4	chr8	94949698	94950698	+	838.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26504.0	NM_001145972	382045.0	Mm.334726	NM_001033468	ENSMUSG00000061577	Adgrg5	Gm1109|Gpr114|PGR27	adhesion G protein-coupled receptor G5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16810521-2	chr7	16810021	16811021	+	838.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_173430, exon 3 of 3)	exon (NM_173430, exon 3 of 3)	-5368.0	NM_133789	97387.0	Mm.21612	NM_133789	ENSMUSG00000030374	Strn4	C80611|ZIN|zinedin	striatin, calmodulin binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134207997-2	chr6	134207497	134208497	+	838.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	172297.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-105731205-5	chr12	105730708	105731708	+	838.47998	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030187, intron 5 of 17)	intron (NM_030187, intron 5 of 17)	25226.0	NM_030187	78801.0	Mm.36006	NM_030187	ENSMUSG00000041323	Ak7	4930502N02Rik|AK 7	adenylate kinase 7	protein-coding	0.0	2.5	1.0	3.5	7.5	1.5
Merged-chr6-49074866-4	chr6	49074391	49075391	+	838.479187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029353, intron 1 of 3)	PB1D11|SINE|Alu	1096.0	NM_029353	75593.0	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26637992-3	chr17	26637468	26638468	+	838.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 7 of 9)	L2b|LINE|L2	-38428.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81401965-4	chr13	81401473	81402473	+	838.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 77 of 89)	MTE2b|LTR|ERVL-MaLR	231171.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19517859-3	chr7	19517402	19518402	+	838.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027116)	promoter-TSS (NM_027116)	-829.0	NM_027116	69547.0	Mm.77325	NM_027116	ENSMUSG00000060621	Nkpd1	2310015G09Rik	NTPase, KAP family P-loop domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95799038-3	chr13	95798483	95799483	+	838.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 2 of 35)	intron (NM_027711, intron 2 of 35)	92939.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	5.0	27.5	23.5	0.0	11.0	9.5
Merged-chr3-144604370-3	chr3	144603856	144604856	+	838.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2C2|LTR|ERVL	33929.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58226058-3	chr9	58225555	58226555	+	838.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008884, intron 6 of 7)	intron (NM_008884, intron 6 of 7)	4905.0	NR_105806	102466639.0		NR_105806	ENSMUSG00000098886	Mir6385	Gm28021|mmu-mir-6385	microRNA 6385	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102573006-4	chr11	102572501	102573501	+	838.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6118.0	NR_040286	100040792.0	Mm.277966	NR_040286	ENSMUSG00000078640	Gm11627	-	predicted gene 11627	ncRNA	0.0	2.0	0.0	1.5	0.0	0.0
Merged-chr19-26853910-4	chr19	26853411	26854411	+	838.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30004.0	NR_045306	70942.0	Mm.411548	NR_045306	ENSMUSG00000093772	4931403E22Rik	-	RIKEN cDNA 4931403E22 gene	ncRNA	2.0	9.0	18.0	15.5	27.0	12.5
Merged-chr3-37802886-4	chr3	37802394	37803394	+	838.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78534.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45922422-4	chr7	45921902	45922902	+	838.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010129)	promoter-TSS (NM_010129)	-976.0	NM_010129	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25832334-2	chr17	25831834	25832834	+	838.375	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037243)	promoter-TSS (NR_037243)	-906.0	NR_037243	100526479.0		NR_037243	ENSMUSG00000093076	Mir3082	mir-3082|mmu-mir-3082	microRNA 3082	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58897743-3	chr1	58897258	58898258	+	838.361084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75724.0	NM_172406	70827.0	Mm.222887	NM_172406	ENSMUSG00000026028	Trak2	2900022D04Rik|4733401O11Rik|AI480836|AW046271|Als2cr3|CALS-C|GRIF-1|GRIF1|OIP98|mKIAA0549	trafficking protein, kinesin binding 2	protein-coding	6.5	8.5	5.5	2.0	1.0	0.5
Merged-chr19-43760664-2	chr19	43760164	43761164	+	838.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113562, intron 4 of 8)	intron (NM_001113562, intron 4 of 8)	7641.0	NM_025530	66388.0	Mm.20257	NM_025530	ENSMUSG00000025193	Cutc	2310039I18Rik|AI326282|CGI-32	cutC copper transporter	protein-coding	2.0	2.0	0.0	6.0	5.0	1.5
Merged-chr4-12005343-2	chr4	12004843	12005843	+	838.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38769.0	NR_040577	100503636.0	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64377924-4	chr5	64377423	64378423	+	838.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	90019.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	78.0	219.5	109.5	85.0	205.5	84.5
Merged-chr17-81524765-3	chr17	81524285	81525285	+	838.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	213602.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-129708467-2	chr3	129707967	129708967	+	838.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001329594, intron 8 of 17)	intron (NM_001329594, intron 8 of 17)	16619.0	NM_001310737	13645.0	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-107665319-3	chr7	107664765	107665765	+	838.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357436)	promoter-TSS (NM_001357436)	-213.0	NM_001357437	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124683825-4	chr6	124683301	124684301	+	838.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149320, intron 1 of 11)	MIR3|SINE|MIR	20697.0	NM_145130	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19687365-2	chr7	19686865	19687865	+	838.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR1B|LTR|ERV1	5294.0	NM_001110009	11812.0	Mm.182440	NM_007469	ENSMUSG00000040564	Apoc1	Apo-CIB|ApoC-IB|apo-CI|apoC-I	apolipoprotein C-I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-15277222-4	chr3	15276700	15277700	+	838.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	55102.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	28.5	9.5	41.5	14.5	25.0	11.0
Merged-chr3-88740064-4	chr3	88739561	88740561	+	838.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	23207.0	NR_028056	19769.0	Mm.4009	NM_009069	ENSMUSG00000028057	Rit1	RIBB|ROC1|Rit	Ras-like without CAAX 1	protein-coding	0.0	1.5	0.5	2.0	1.0	0.0
Merged-chr13-95481594-4	chr13	95481110	95482110	+	838.325012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2955.0	NM_001081159	268686.0	Mm.291249	NM_001081159	ENSMUSG00000021679	S100z	Gm625	S100 calcium binding protein, zeta	protein-coding	8.0	0.0	2.5	0.0	5.0	3.0
Merged-chr5-121815287-4	chr5	121814791	121815791	+	838.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008507)	TTS (NM_008507)	3982.0	NR_105998	102465624.0		NR_105998	ENSMUSG00000099063	Mir7031	Gm27859|mmu-mir-7031	microRNA 7031	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-45608673-2	chr16	45608173	45609173	+	838.299988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1767.0	NM_008099	14525.0	Mm.4799	NM_008099	ENSMUSG00000022659	Gcsam	Gcet|Gcet2|M17|M17-L	germinal center associated, signaling and motility	protein-coding	18.0	34.0	26.5	1.5	6.0	10.0
Merged-chr4-151977944-4	chr4	151977440	151978440	+	838.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172704, intron 11 of 15)	intron (NM_172704, intron 11 of 15)	11046.0	NM_175152	69876.0	Mm.226820	NM_175152	ENSMUSG00000039759	Thap3	2010013E08Rik|2210418H06Rik	THAP domain containing, apoptosis associated protein 3	protein-coding	2.5	9.5	1.5	10.5	5.5	4.5
Merged-chr4-46565248-4	chr4	46564695	46565695	+	838.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178893, intron 1 of 12)	intron (NM_178893, intron 1 of 12)	1245.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	19.5	18.0	22.5	28.0	35.5	30.0
Merged-chr19-37547026-4	chr19	37546568	37547568	+	838.287476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3350.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	18.5	39.5	17.0	11.5	48.0	21.5
Merged-chr2-122244024-3	chr2	122243531	122244531	+	838.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146126, intron 1 of 8)	intron (NM_146126, intron 1 of 8)	9192.0	NM_146126	20322.0	Mm.371580	NM_146126	ENSMUSG00000027227	Sord	Sdh-1|Sdh1|Sodh-1	sorbitol dehydrogenase	protein-coding	4.0	4.5	3.0	0.0	5.0	0.0
Merged-chr2-138258567-3	chr2	138258065	138259065	+	838.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025431, intron 1 of 4)	intron (NM_001025431, intron 1 of 4)	1981.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11580164-4	chr4	11579647	11580647	+	838.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256142, intron 1 of 1)	intron (NM_001256142, intron 1 of 1)	485.0	NM_001256142	100503583.0	Mm.249437	NM_001256142	ENSMUSG00000094595	Fsbp	-	fibrinogen silencer binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-89674355-3	chr9	89673833	89674833	+	838.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30710.0	NM_025360	66111.0	Mm.27606	NM_025360	ENSMUSG00000032353	Tmed3	1200002G13Rik|AW546672|P24b	transmembrane p24 trafficking protein 3	protein-coding	4.0	6.5	1.5	0.0	15.5	1.5
Merged-chr18-60665483-2	chr18	60664983	60665983	+	838.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_045401, intron 1 of 2)	intron (NR_045401, intron 1 of 2)	2073.0	NR_045401	328963.0	Mm.417203	NR_045401		G630071F17Rik	G630071F17	RIKEN cDNA G630071F17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-101481381-4	chr14	101480890	101481890	+	838.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 8 of 18)	HAL1|LINE|L1	127801.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45840041-2	chr13	45839541	45840541	+	838.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 3 of 6)	intron (NM_001199304, intron 3 of 6)	124950.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-35768702-2	chr11	35768156	35769156	+	838.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145962)	promoter-TSS (NM_145962)	-839.0	NM_145962	211347.0	Mm.255044	NM_145962	ENSMUSG00000018846	Pank3	-	pantothenate kinase 3	protein-coding	1.0	0.0	0.5	0.0	3.0	0.0
Merged-chr8-79641372-2	chr8	79640872	79641872	+	838.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081164, intron 1 of 20)	intron (NM_001081164, intron 1 of 20)	1696.0	NM_001081164	73945.0	Mm.34348	NM_001081164	ENSMUSG00000036990	Otud4	4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046	OTU domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-4918698-2	chr5	4918198	4919198	+	838.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 12 of 14)	intron (NM_011074, intron 12 of 14)	-160482.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116085968-2	chr11	116085468	116086468	+	838.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361446, intron 1 of 6)	intron (NM_001361446, intron 1 of 6)	1027.0	NM_001361446	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-35158042-4	chr4	35157533	35158533	+	838.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178061)	promoter-TSS (NM_178061)	-549.0	NM_178061	214944.0	Mm.32968	NM_178061	ENSMUSG00000073910	Mob3b	8430436F23Rik|A430018A01Rik|Mobkl2b	MOB kinase activator 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106373092-4	chr9	106372558	106373558	+	838.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153459, intron 2 of 2)	intron (NM_153459, intron 2 of 2)	4426.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	8.5	35.0	32.0	17.5	24.0	15.5
Merged-chr5-66259899-3	chr5	66259422	66260422	+	838.25	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_027602)	promoter-TSS (NM_027602)	24.0	NM_001302834	70918.0	Mm.23166	NM_027602	ENSMUSG00000029206	Nsun7	4921525L17Rik	NOL1/NOP2/Sun domain family, member 7	protein-coding	7.5	1.0	0.5	0.5	8.0	4.0
Merged-chr12-12286804-2	chr12	12286304	12287304	+	838.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	24665.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67243149-4	chr18	67242665	67243665	+	838.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172630, intron 2 of 10)	PB1D11|SINE|Alu	2665.0	NM_172630	225651.0	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	Pgap5	metallophosphoesterase 1	protein-coding	10.0	11.0	6.5	2.0	12.5	8.5
Merged-chr7-44554595-3	chr7	44554094	44555094	+	838.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285519)	promoter-TSS (NM_001285519)	-629.0	NM_001285517	22260.0	Mm.968	NM_009473	ENSMUSG00000060601	Nr1h2	AI194859|LXR|LXRB|LXRBSV|LXRbeta|NER1|OR-1|RIP15|UR|Unr|Unr2	nuclear receptor subfamily 1, group H, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37222842-3	chr10	37222360	37223360	+	838.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83934.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122782340-4	chr10	122781892	122782892	+	838.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 2 of 9)	intron (NM_001110218, intron 2 of 9)	103077.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	25.0	56.5	48.0	3.5	11.0	12.5
Merged-chr13-51351013-4	chr13	51350529	51351529	+	838.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57589.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58690579-4	chr16	58690053	58691053	+	838.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20345.0	NM_007757	12892.0	Mm.291519	NM_007757	ENSMUSG00000022742	Cpox	CPX|Cpo|HCP|cac|nct	coproporphyrinogen oxidase	protein-coding	2.0	3.5	0.0	1.0	2.5	2.0
Merged-chr15-101980692-2	chr15	101980192	101981192	+	838.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23650.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36923209-3	chr1	36922702	36923702	+	838.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 1 of 40)	B3|SINE|B2	16325.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104277736-3	chr9	104277233	104278233	+	838.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14803.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81428603-2	chr10	81428103	81429103	+	838.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1430.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94958453-2	chr10	94957953	94958953	+	838.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13875.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-133132884-4	chr1	133132378	133133378	+	838.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133819, exon 1 of 2)	exon (NM_133819, exon 1 of 2)	1712.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7878437-4	chr9	7877941	7878941	+	838.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5271.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154712414-4	chr2	154711927	154712927	+	838.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55401.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-15569388-3	chr16	15568885	15569885	+	838.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159351, intron 2 of 2)	MTD|LTR|ERVL-MaLR	25133.0	NM_001159351	70620.0	Mm.235407	NM_023585	ENSMUSG00000022674	Ube2v2	1110021H13Rik|4632410D19Rik|5730524P06Rik|6820402M05|AI848315|C81524|MMS2	ubiquitin-conjugating enzyme E2 variant 2	protein-coding	3.5	11.5	0.5	0.0	11.0	1.0
Merged-chr7-5064305-4	chr7	5063842	5064842	+	838.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205231, intron 1 of 11)	intron (NM_001205231, intron 1 of 11)	2199.0	NM_001205231	22185.0	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101503996-4	chr7	101503473	101504473	+	838.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001143849, exon 15 of 30)	exon (NM_001143849, exon 15 of 30)	28597.0	NR_029791	387157.0		NR_029791	ENSMUSG00000065446	Mir139	Mirn139|mir-139|mmu-mir-139	microRNA 139	ncRNA	0.0	2.5	1.0	0.0	0.0	1.5
Merged-chr7-121981023-4	chr7	121980530	121981530	+	838.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033318, intron 1 of 16)	intron (NM_001033318, intron 1 of 16)	663.0	NM_001033318	233824.0	Mm.442015	NM_001033318	ENSMUSG00000034951	Cog7	5630400E24Rik|Gm167	component of oligomeric golgi complex 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112466231-3	chr13	112465733	112466733	+	838.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010560, intron 1 of 16)	intron (NM_010560, intron 1 of 16)	2163.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11118175-3	chr8	11117667	11118667	+	838.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109737.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65693191-3	chr9	65692710	65693710	+	838.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172536, exon 10 of 10)	3' UTR (NM_172536, exon 10 of 10)	16662.0	NM_001301307	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73595992-3	chr7	73595498	73596498	+	838.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-37603.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	9.0	50.0	30.0	17.0	54.5	27.0
Merged-chr2-151968019-4	chr2	151967531	151968531	+	838.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035478)	promoter-TSS (NR_035478)	-414.0	NR_035478	100316704.0		NR_035478	ENSMUSG00000088491	Mir1953	mir-1953|mmu-mir-1953	microRNA 1953	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171619874-4	chr1	171619377	171620377	+	838.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12467.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	31.5	69.5	69.0	28.5	59.5	50.5
Merged-chr6-146221516-5	chr6	146221035	146222035	+	838.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 45 of 56)	intron (NM_019923, intron 45 of 56)	280688.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65491911-4	chr5	65491419	65492419	+	838.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133697, intron 1 of 4)	intron (NM_133697, intron 1 of 4)	916.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86751203-2	chr11	86750703	86751703	+	838.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	B3|SINE|B2	6364.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-62843355-2	chr14	62842855	62843855	+	838.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	5634.0	NR_106174	102465889.0		NR_106174	ENSMUSG00000099245	Mir8098	Gm27462|mmu-mir-8098	microRNA 8098	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154949742-2	chr4	154949202	154950202	+	838.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11221.0	NM_010419	15208.0	Mm.137268	NM_010419	ENSMUSG00000048001	Hes5	bHLHb38	hes family bHLH transcription factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128695273-2	chr10	128694773	128695773	+	838.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177411, intron 1 of 5)	intron (NM_177411, intron 1 of 5)	995.0	NM_177411	19344.0	Mm.12815	NM_011229	ENSMUSG00000000711	Rab5b	C030027M18Rik	RAB5B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91775002-2	chr12	91774502	91775502	+	838.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	11434.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117801278-1	chr2	117800778	117801778	+	838.0	f1_c57bl6.idr	Intergenic	Intergenic	11524.0	NR_126427	100504728.0	Mm.413174	NR_126427		Gm13985	-	predicted gene 13985	ncRNA	16.0	36.5	36.5	5.0	13.0	22.5
Merged-chr10-128191422-2	chr10	128190922	128191922	+	838.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3213.0	NM_001285777	216456.0	Mm.30102	NM_001033264	ENSMUSG00000044005	Gls2	A330074B06Rik|AI195532|GA|GLS|Lga	glutaminase 2 (liver, mitochondrial)	protein-coding	0.0	3.0	0.0	0.0	3.0	0.0
Merged-chr19-29062394-2	chr19	29061894	29062894	+	838.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-4907.0	NR_045687	100503337.0	Mm.103412	NR_045687		Gm9895	-	predicted gene 9895	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-37540892-2	chr16	37540392	37541392	+	838.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042499, intron 1 of 7)	MT2C_Mm|LTR|ERVL	998.0	NM_001042499	67657.0	Mm.28158	NM_026297	ENSMUSG00000022827	Rabl3	4930553C05Rik|AA958834	RAB, member RAS oncogene family-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-128242287-2	chr1	128241787	128242787	+	838.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1850.0	NM_026390	67812.0	Mm.293321	NM_026390	ENSMUSG00000026353	Ubxn4	1300013G12Rik|Ubxd2|mKIAA0242	UBX domain protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86505458-2	chr1	86504958	86505958	+	838.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21099.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-66346703-2	chr6	66346203	66347203	+	838.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74198.0	NR_136927	102633773.0	Mm.272086	NR_136927	ENSMUSG00000107653	Gm31520	-	sterol-C5-desaturase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-105641392-2	chr7	105640914	105641914	+	838.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029802)	promoter-TSS (NM_029802)	969.0	NM_001360054	14356.0	Mm.220330	NM_019502	ENSMUSG00000089847	Timm10b	Fxc1|Tim10b|Tim9b	translocase of inner mitochondrial membrane 10B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-20777678-1	chr4	20777178	20778178	+	838.0	f0_balb.idr	intron (NM_172987, intron 1 of 4)	intron (NM_172987, intron 1 of 4)	990.0	NM_001290410	269513.0	Mm.317473	NM_172987	ENSMUSG00000055761	Nkain3	C530048M05|E130310K16Rik	Na+/K+ transporting ATPase interacting 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114687996-2	chr5	114687496	114688496	+	838.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019821, intron 1 of 4)	ORR1A2|LTR|ERVL-MaLR	2939.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117355695-2	chr8	117355195	117356195	+	838.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	6525.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93813175-2	chr10	93812676	93813676	+	838.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18379.0	NM_001206851	327799.0	Mm.491598	NM_183199	ENSMUSG00000020020	Usp44	E430004F17Rik	ubiquitin specific peptidase 44	protein-coding	6.0	19.5	12.5	1.5	3.5	8.5
Merged-chr5-84779489-1	chr5	84778989	84779989	+	838.0	f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-362107.0	NM_007937	13839.0	Mm.137991	NM_007937	ENSMUSG00000029245	Epha5	AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk	Eph receptor A5	protein-coding	11.0	3.0	2.5	0.0	0.0	2.5
Merged-chr5-120611512-2	chr5	120611012	120612012	+	838.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029096, exon 2 of 3)	exon (NM_029096, exon 2 of 3)	1077.0	NM_029096	100764.0	Mm.9654	NM_029096	ENSMUSG00000029600	Rita1	1110008J03Rik|AI853657|C86297|Rita	RBPJ interacting and tubulin associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88653166-2	chr17	88652666	88653666	+	838.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15494.0	NM_023630	71828.0	Mm.61330	NM_023630	ENSMUSG00000024154	Gtf2a1l	1700011N16Rik|Alf|Gtf2a1lf	general transcription factor IIA, 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18677863-3	chr2	18677390	18678390	+	838.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007552, intron 1 of 9)	intron (NM_007552, intron 1 of 9)	872.0	NM_007552	12151.0	Mm.289584	NM_007552	ENSMUSG00000026739	Bmi1	AW546694|Bmi-1|Pcgf4	Bmi1 polycomb ring finger oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98676945-3	chr10	98676415	98677415	+	838.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-237727.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145230811-3	chr4	145230300	145231300	+	838.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	16070.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88232666-2	chr1	88232166	88233166	+	838.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 6 of 41)	MTD|LTR|ERVL-MaLR	5646.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-149917300-3	chr1	149916789	149917789	+	838.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 3 of 17)	intron (NM_008869, intron 3 of 17)	5150.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9929873-1	chr19	9929373	9930373	+	838.0	f1_c57bl6.idr	Intergenic	Intergenic	-30340.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	14.0	18.5	30.5	17.0	22.0	21.5
Merged-chr14-20693514-2	chr14	20693014	20694014	+	838.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172596, intron 22 of 22)	intron (NM_172596, intron 22 of 22)	-1454.0	NM_028428	73068.0	Mm.277552	NM_028428	ENSMUSG00000039357	Fut11	3110009G03Rik|AI317183	fucosyltransferase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128367480-2	chr10	128366980	128367980	+	838.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081040, intron 2 of 4)	B1_Mur2|SINE|Alu	2557.0	NM_001081040	210582.0	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152136225-2	chr4	152135725	152136725	+	838.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207691)	promoter-TSS (NM_207691)	100.0	NM_207689	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122411306-2	chr8	122410806	122411806	+	838.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001310650, exon 13 of 18)	exon (NM_001310650, exon 13 of 18)	-10714.0	NM_145834	234836.0	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-17538310-2	chr15	17537810	17538810	+	838.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	760209.0	NM_009869	12565.0	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-119070645-3	chr10	119070132	119071132	+	838.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20133.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-80070981-2	chr9	80070481	80071481	+	838.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311110, intron 1 of 23)	intron (NM_001311110, intron 1 of 23)	4078.0	NM_146003	215351.0	Mm.28232	NM_146003	ENSMUSG00000034252	Senp6	2810017C20Rik|E130319N12Rik|Susp1|mKIAA0797	SUMO/sentrin specific peptidase 6	protein-coding	0.0	7.5	2.5	0.0	7.5	4.5
Merged-chr16-8831667-2	chr16	8831167	8832167	+	838.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081400, intron 2 of 3)	intron (NM_001081400, intron 2 of 3)	1567.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99953852-1	chr7	99953352	99954352	+	838.0	f0_balb.idr	intron (NM_175388, intron 2 of 5)	intron (NM_175388, intron 2 of 5)	26606.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	24.5	0.0	2.5	3.5	4.5	3.0
Merged-chr11-115285503-2	chr11	115285003	115286003	+	838.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178035, intron 3 of 5)	intron (NM_178035, intron 3 of 5)	-8534.0	NM_007997	14149.0	Mm.4719	NM_007997	ENSMUSG00000018861	Fdxr	AR	ferredoxin reductase	protein-coding	4.5	5.0	12.0	6.0	9.5	4.0
Merged-chr1-124077742-3	chr1	124077240	124078240	+	838.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32181.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	3.0	5.0	5.5	2.5	8.0	1.5
Merged-chr16-55760266-2	chr16	55759766	55760766	+	838.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	61872.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79981317-2	chr10	79980817	79981817	+	838.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359632, intron 1 of 9)	intron (NM_001359632, intron 1 of 9)	2943.0	NM_001359632	216157.0	Mm.29442	NM_001003949	ENSMUSG00000013858	Tmem259	AC087114.7gm2|ORF61|R32184_3|mFLJ00277	transmembrane protein 259	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151035578-2	chr1	151035078	151036078	+	838.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42143.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-79950083-2	chr17	79949583	79950583	+	838.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53960.0	NM_001286647	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-53377896-1	chr13	53377396	53378396	+	838.0	f1_balb.idr	promoter-TSS (NM_009269)	promoter-TSS (NM_009269)	-535.0	NM_009269	268656.0	Mm.240336	NM_009269	ENSMUSG00000021468	Sptlc1	AW552086|C77762|E030036H05|Lcb1|SPT1	serine palmitoyltransferase, long chain base subunit 1	protein-coding	28.0	71.5	21.5	20.0	18.0	16.0
Merged-chr16-22106404-2	chr16	22105904	22106904	+	838.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	56895.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62793288-2	chr10	62792788	62793788	+	838.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026201)	promoter-TSS (NM_026201)	-920.0	NM_026201	67500.0	Mm.196371	NM_026201	ENSMUSG00000020074	Ccar1	2610511G16Rik|9430036H15Rik|Carp1	cell division cycle and apoptosis regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-21016789-4	chr2	21016304	21017304	+	838.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47930.0	NR_033225	433408.0	Mm.386941	NR_033225		Gm13375	-	predicted gene 13375	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-89149306-4	chr18	89148805	89149805	+	838.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48122.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123391162-2	chr5	123390662	123391662	+	838.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3636.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43516239-1	chr19	43515739	43516739	+	838.0	f1_balb.idr	intron (NM_010324, intron 1 of 8)	intron (NM_010324, intron 1 of 8)	8366.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	2.0	1.0	3.5	0.5	0.0	1.5
Merged-chr2-13597188-3	chr2	13596685	13597685	+	838.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22874.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25226636-4	chr8	25226132	25227132	+	837.983337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25090.0	NM_177089	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91880048-4	chr16	91879530	91880530	+	837.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 28 of 38)	MLT1B|LTR|ERVL-MaLR	51600.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153076032-5	chr2	153075542	153076542	+	837.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145536, intron 6 of 8)	intron (NM_145536, intron 6 of 8)	10087.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	20.5	42.5	35.5	26.5	49.0	27.5
Merged-chr9-110841586-4	chr9	110841071	110842071	+	837.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153172)	TTS (NM_153172)	-2935.0	NM_183103	74306.0	Mm.87419	NM_183103	ENSMUSG00000049719	Prss46	1700112C13Rik|79H19B|Tessp6	protease, serine 46	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-106908424-4	chr4	106907905	106908905	+	837.962524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-3065.0	NM_198438	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	1.0	7.0	24.0	1.0	10.0	23.0
Merged-chr4-3742630-4	chr4	3742149	3743149	+	837.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 3 of 12)	L1MB3|LINE|L1	27685.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74752975-4	chr15	74752476	74753476	+	837.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011838)	promoter-TSS (NM_011838)	3.0	NM_011838	23936.0	Mm.257067	NM_011838	ENSMUSG00000022594	Lynx1	AI838844|SLURP-2	Ly6/neurotoxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-23466389-4	chr1	23465912	23466912	+	837.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83237.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94076959-4	chr8	94076421	94077421	+	837.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026116, intron 13 of 16)	intron (NM_026116, intron 13 of 16)	21890.0	NM_026116	67378.0	Mm.292107	NM_026116	ENSMUSG00000031755	Bbs2	2410125H22Rik|AI447581	Bardet-Biedl syndrome 2 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58481922-4	chr16	58481388	58482388	+	837.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 6 of 10)	intron (NM_001357433, intron 6 of 10)	41538.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-63897966-4	chr11	63897490	63898490	+	837.946411	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018805, intron 1 of 1)	intron (NM_018805, intron 1 of 1)	24294.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	14.0	13.0	13.0	8.5	4.0	6.0
Merged-chr13-78210999-3	chr13	78210445	78211445	+	837.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045195, intron 1 of 2)	intron (NR_045195, intron 1 of 2)	-12072.0	NM_010151	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-15035013-3	chr9	15034516	15035516	+	837.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019482, intron 1 of 4)	intron (NM_019482, intron 1 of 4)	10462.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35539675-3	chr2	35539174	35540174	+	837.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18784.0	NM_001114125	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27817419-2	chr17	27816919	27817919	+	837.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033279, intron 1 of 4)	intron (NM_001033279, intron 1 of 4)	3123.0	NM_001033279	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	12.0	37.0	13.0	11.0	26.5	16.5
Merged-chr5-117136067-3	chr5	117135592	117136592	+	837.9111330000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	2504.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	1.0	11.5	7.5	1.0	6.0	8.0
Merged-chr9-96889558-3	chr9	96889083	96890083	+	837.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289646)	promoter-TSS (NM_001289646)	-109.0	NM_001289647	235534.0	Mm.233031	NM_153420	ENSMUSG00000043587	Pxylp1	9430094M07Rik|Acpl2|BB177120|C130099A20Rik	2-phosphoxylose phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65360687-4	chr3	65360199	65361199	+	837.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357358, intron 11 of 13)	intron (NM_001357358, intron 11 of 13)	-11270.0	NR_040390	319798.0	Mm.445698	NR_040390		A730090N16Rik	-	RIKEN cDNA A730090N16 gene	ncRNA	13.0	11.5	10.0	6.0	22.0	12.0
Merged-chr12-52501134-3	chr12	52500636	52501636	+	837.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14941.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	2.0	16.5	9.5	2.0	14.5	9.0
Merged-chr3-9829247-4	chr3	9828765	9829765	+	837.837524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195031, intron 1 of 8)	MIRb|SINE|MIR	4414.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	12.0	72.0	53.5	16.5	34.0	38.0
Merged-chr17-8147018-2	chr17	8146518	8147518	+	837.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026611, intron 1 of 8)	intron (NM_026611, intron 1 of 8)	770.0	NM_001083938	100037283.0	Mm.426736	NM_001083938	ENSMUSG00000095687	Rnaset2a	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-9129835-2	chr15	9129335	9130335	+	837.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 2 of 9)	intron (NM_013787, intron 2 of 9)	10619.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103269610-4	chr11	103269124	103270124	+	837.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2223.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	8.5	0.5	1.5	1.0	1.0	3.0
Merged-chr18-69280565-3	chr18	69280065	69281065	+	837.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63927.0	NM_013685	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	7.0	5.0	2.5	0.0	3.0	3.0
Merged-chr10-77880557-3	chr10	77880053	77881053	+	837.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287074, intron 9 of 11)	intron (NM_001287074, intron 9 of 11)	-12867.0	NR_015547	75188.0	Mm.348012	NM_029200	ENSMUSG00000096573	1700009J07Rik	4930535B06Rik	RIKEN cDNA 1700009J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96537661-2	chr9	96537161	96538161	+	837.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58986.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62744220-3	chr11	62743763	62744763	+	837.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15170.0	NM_133208	170740.0	Mm.339982	NM_133208	ENSMUSG00000005267	Zfp287	B230333C16Rik|SKAT-2|Skat2|Znf287|mszf16|mszf74	zinc finger protein 287	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89453516-4	chr15	89453026	89454026	+	837.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021921)	promoter-TSS (NM_021921)	-385.0	NM_021921	60597.0	Mm.173337	NM_021921	ENSMUSG00000022619	Mapk8ip2	3230402N03Rik|AI847694|AW049958|IB2|Jip2|R75148	mitogen-activated protein kinase 8 interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9585077-2	chr18	9584577	9585577	+	837.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A-int|LTR|ERVK	34392.0	NM_007593	26369.0	Mm.195831	NM_007593	ENSMUSG00000050996	Cetn1	caltractin	centrin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92375944-3	chr5	92375438	92376438	+	837.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-12196.0	NM_181728	109979.0	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	101.0	236.5	162.5	146.0	185.5	149.5
Merged-chr11-80508664-4	chr11	80508138	80509138	+	837.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_126552, exon 1 of 3)	non-coding (NR_126552, exon 1 of 3)	468.0	NR_126552	77417.0	Mm.437510	NR_126552	ENSMUSG00000085078	C030013C21Rik	-	RIKEN cDNA C030013C21 gene	ncRNA	0.0	0.0	3.5	0.0	8.0	1.0
Merged-chr9-45411895-2	chr9	45411395	45412395	+	837.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5818.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0.5	0.0	3.5	0.0	3.0	0.5
Merged-chr10-128731163-4	chr10	128730684	128731684	+	837.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016811, exon 11 of 24)	exon (NM_016811, exon 11 of 24)	12892.0	NM_016811	13139.0	Mm.291235	NM_016811	ENSMUSG00000025357	Dgka	80kDa|AW146112|Dagk1	diacylglycerol kinase, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92603047-4	chr5	92602569	92603569	+	837.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175096)	promoter-TSS (NM_175096)	18.0	NM_175096	52331.0	Mm.21965	NM_175096	ENSMUSG00000047963	Stbd1	D530019K15Rik|D5Ertd593e	starch binding domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46467251-4	chr19	46466713	46467713	+	837.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 8 of 11)	intron (NM_001025391, intron 8 of 11)	-34435.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68373145-3	chr10	68372645	68373645	+	837.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52003.0	NR_045357	75148.0	Mm.23505	NR_045357	ENSMUSG00000112157	4930545H06Rik	-	RIKEN cDNA 4930545H06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32617437-3	chr17	32616937	32617937	+	837.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MuLV-int|LTR|ERV1	-3882.0	NM_001100187	677156.0	Mm.484117	NM_001100187	ENSMUSG00000062464	Cyp4f37	Gm9705	cytochrome P450, family 4, subfamily f, polypeptide 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-162649421-3	chr1	162648914	162649914	+	837.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010865, exon 3 of 3)	3' UTR (NM_010865, exon 3 of 3)	8805.0	NM_001177581	100038657.0	Mm.416999	NM_001177581	ENSMUSG00000091060	Myocos	7420461P10Rik	myocilin opposite strand	protein-coding	7.0	0.0	8.5	10.0	11.5	14.5
Merged-chr3-13561120-3	chr3	13560615	13561615	+	837.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357034, intron 1 of 7)	L1_Mus2|LINE|L1	88316.0	NM_001357036	76897.0	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3715646-3	chr2	3715128	3716128	+	837.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	2170.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24540559-4	chr17	24540065	24541065	+	837.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6818.0	NM_177375	328778.0	Mm.266033	NM_177375	ENSMUSG00000079657	Rab26	A830020M03Rik	RAB26, member RAS oncogene family	protein-coding	0.0	10.5	3.0	2.0	1.5	8.5
Merged-chr11-69761416-2	chr11	69760916	69761916	+	837.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_019871, intron 1 of 1)	intron (NM_019871, intron 1 of 1)	428.0	NM_019871	56293.0	Mm.6211	NM_019871	ENSMUSG00000018776	Slc35g3	Amac1	solute carrier family 35, member G3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4524436-4	chr7	4523933	4524933	+	837.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033548, intron 9 of 11)	B3A|SINE|B2	-1905.0	NM_009406	21954.0	Mm.27674	NM_009406	ENSMUSG00000035458	Tnni3	Tn1|cTnI	troponin I, cardiac 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-84703355-4	chr16	84702841	84703841	+	837.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9682.0	NR_132106	100653389.0	Mm.261808	NR_132106	ENSMUSG00000097418	Mir155hg	Bic|Gm26667	Mir155 host gene (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-11280149-2	chr10	11279649	11280649	+	837.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-1181.0	NM_027968	71865.0	Mm.276229	NM_027968	ENSMUSG00000047648	Fbxo30	1700026A16Rik|MUSA1	F-box protein 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142589022-3	chr3	142588490	142589490	+	837.733337	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-5857.0	NM_010259	14468.0	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-102734822-5	chr3	102734346	102735346	+	837.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243132)	promoter-TSS (NM_001243132)	76.0	NM_027533	70747.0	Mm.27469	NM_027533	ENSMUSG00000027858	Tspan2	6330415F13Rik|B230119D02Rik|tspan-2	tetraspanin 2	protein-coding	0.0	1.5	3.5	0.0	1.5	1.0
Merged-chr8-98999349-3	chr8	98998841	98999841	+	837.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12546.0	NR_110579	100873092.0	Mm.414599	NR_110579	ENSMUSG00000089819	Gm15679	-	predicted gene 15679	ncRNA	0.0	0.0	0.5	1.0	2.5	0.0
Merged-chr2-118727029-4	chr2	118726571	118727571	+	837.712524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177568, intron 1 of 31)	intron (NM_177568, intron 1 of 31)	1367.0	NM_177568	18796.0	Mm.215156	NM_177568	ENSMUSG00000040061	Plcb2	AI550384|B230205M18Rik|B230399N12	phospholipase C, beta 2	protein-coding	11.0	8.5	7.5	12.0	8.5	11.0
Merged-chr9-64703712-4	chr9	64703209	64704209	+	837.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134399, intron 23 of 24)	MIRc|SINE|MIR	34047.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62626588-4	chr4	62626090	62627090	+	837.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019492, intron 14 of 19)	intron (NM_019492, intron 14 of 19)	6918.0	NM_134257	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	2.5	2.0	0.0	2.5	2.5	0.0
Merged-chr8-22934619-4	chr8	22934107	22935107	+	837.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081149, intron 16 of 17)	intron (NM_001081149, intron 16 of 17)	-40229.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.0	14.5	2.5	1.5	7.0	5.5
Merged-chr2-102744585-2	chr2	102744085	102745085	+	837.6999509999999	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153852, exon 3 of 3)	non-coding (NR_153852, exon 3 of 3)	2175.0	NR_153852	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128389287-3	chr2	128388748	128389748	+	837.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	40103.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-86893757-3	chr8	86893227	86894227	+	837.688904	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8469.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0.0	5.0	2.5	0.0	0.0	0.0
Merged-chr19-21373517-4	chr19	21372994	21373994	+	837.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99167.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	0.0	1.5	4.5	0.0	1.5	4.5
Merged-chr11-110562536-4	chr11	110562049	110563049	+	837.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83209.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0.0	12.5	1.0	3.0	0.0	4.0
Merged-chr1-64120701-6	chr1	64120187	64121187	+	837.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	702.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-104331473-3	chr11	104331004	104332004	+	837.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010838, exon 10 of 10)	3' UTR (NM_010838, exon 10 of 10)	100068.0	NM_001285454	17762.0	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-72474301-3	chr2	72473838	72474838	+	837.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1881.0	NM_025866	66953.0	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-53572577-2	chr6	53572076	53573076	+	837.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172728)	promoter-TSS (NM_172728)	-798.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	36.0	121.0	52.5	20.0	111.5	39.0
Merged-chr2-33643253-4	chr2	33642766	33643766	+	837.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_046275, exon 3 of 3)	non-coding (NR_046275, exon 3 of 3)	2073.0	NR_046275	100504399.0	Mm.72070	NM_177842		C130021I20Rik	-	Riken cDNA C130021I20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166046515-3	chr2	166046053	166047053	+	837.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 2 of 22)	intron (NM_008679, intron 2 of 22)	53916.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	3.5	1.5	6.0	1.5	0.0	0.0
Merged-chr17-46651790-2	chr17	46651290	46652290	+	837.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_025611, exon 2 of 26)	exon (NM_025611, exon 2 of 26)	1452.0	NM_025611	66515.0	Mm.329078	NM_025611	ENSMUSG00000038545	Cul7	2510004L20Rik|AA409809|C230011P08Rik|p185|p193	cullin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70861813-2	chr8	70861313	70862313	+	837.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4805.0	NM_032397	84036.0	Mm.32074	NM_032397	ENSMUSG00000002908	Kcnn1	AI854248|KCa2.1|SK1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	protein-coding	0.5	3.5	0.0	0.0	0.0	0.0
Merged-chr4-59354615-3	chr4	59354109	59355109	+	837.633362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 10 of 16)	MLT1D|LTR|ERVL-MaLR	84024.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-133744611-8	chr7	133744117	133745117	+	837.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357685, intron 3 of 11)	intron (NM_001357685, intron 3 of 11)	15652.0	NM_001286030	101437.0	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32|muDDX32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64375502-4	chr17	64374997	64375997	+	837.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43614.0	NM_001025309	224938.0	Mm.489681	NM_144859	ENSMUSG00000024083	Pja2	AI447901|AL022700|Neurodap1|mKIAA0438	praja ring finger ubiquitin ligase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-123201563-3	chr7	123201027	123202027	+	837.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-13339.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139355449-3	chr5	139354974	139355974	+	837.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160265, intron 4 of 8)	intron (NM_001160265, intron 4 of 8)	2857.0	NM_001160265	545817.0	Mm.482474	NM_001160265	ENSMUSG00000029541	Cyp2w1	Gm455	cytochrome P450, family 2, subfamily w, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64120969-3	chr13	64120479	64121479	+	837.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001321, intron 2 of 11)	intron (NM_001001321, intron 2 of 11)	8351.0	NM_001001321	70484.0	Mm.133731	NM_001001321	ENSMUSG00000033114	Slc35d2	5730408I21Rik|SQV7L|UGTrel8|hfrc|mUGTrel8	solute carrier family 35, member D2	protein-coding	1.0	6.0	13.0	1.0	6.5	5.0
Merged-chr3-55949349-4	chr3	55948865	55949865	+	837.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030595, intron 33 of 57)	intron (NM_030595, intron 33 of 57)	102260.0	NR_033592	71182.0	Mm.195603	NR_033592	ENSMUSG00000106572	4933417G07Rik	-	SEC13 homolog pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81989896-4	chr15	81989409	81990409	+	837.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9369.0	NM_025503	66346.0	Mm.54292	NM_025503	ENSMUSG00000061633	1700029P11Rik	-	RIKEN cDNA 1700029P11 gene	protein-coding	0.0	8.0	2.0	0.0	14.0	0.5
Merged-chr2-27349128-3	chr2	27348626	27349626	+	837.577759	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	78482.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30655652-4	chr14	30655122	30656122	+	837.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177815, intron 1 of 12)	PB1D10|SINE|Alu	1247.0	NM_177815	328370.0	Mm.259657	NM_177815	ENSMUSG00000052395	Rft1	D930025H04	RFT1 homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106071470-3	chr1	106070986	106071986	+	837.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81080.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-72946155-3	chr11	72945659	72946659	+	837.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15010.0	NM_016745	53313.0	Mm.6306	NM_016745	ENSMUSG00000020788	Atp2a3	SERCA3b|Serca3	ATPase, Ca++ transporting, ubiquitous	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64279396-3	chr15	64278919	64279919	+	837.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	33254.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-5517589-4	chr15	5517076	5518076	+	837.552063	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045274, intron 1 of 4)	intron (NR_045274, intron 1 of 4)	21258.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84268750-4	chr17	84268263	84269263	+	837.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 30 of 37)	intron (NM_183021, intron 30 of 37)	-80816.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71336501-4	chr2	71336001	71337001	+	837.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 3 of 17)	intron (NM_172436, intron 3 of 17)	31053.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-13593498-2	chr1	13593037	13594037	+	837.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-3627.0	NM_028173	72265.0	Mm.28765	NM_028173	ENSMUSG00000025935	Tram1	1810049E02Rik|TRAMP	translocating chain-associating membrane protein 1	protein-coding	3.0	4.0	4.5	3.0	0.0	3.0
Merged-chr6-48395759-5	chr6	48395233	48396233	+	837.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152251)	promoter-TSS (NR_152251)	147.0	NM_001362144	77827.0	Mm.107646	NM_133922	ENSMUSG00000042810	Krba1	A930040G15Rik|AI448780	KRAB-A domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61947542-2	chr9	61947042	61948042	+	837.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024245)	promoter-TSS (NM_024245)	-743.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158140873-2	chr2	158140373	158141373	+	837.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 2 of 12)	intron (NM_009373, intron 2 of 12)	5519.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-48814607-2	chr11	48814107	48815107	+	837.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145377, intron 1 of 5)	B1_Mur2|SINE|Alu	2784.0	NM_145377	211007.0	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60977514-2	chr18	60977014	60978014	+	837.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177407, intron 14 of 17)	intron (NM_177407, intron 14 of 17)	13960.0	NM_001286809	12322.0	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130910239-2	chr4	130909739	130910739	+	837.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-3095.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62822752-2	chr4	62822252	62823252	+	837.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-142822.0	NM_028326	72701.0	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-12932951-2	chr10	12932451	12933451	+	837.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-9824.0	NR_038028	320273.0	Mm.417706	NR_038027	ENSMUSG00000097378	B230208H11Rik	-	RIKEN cDNA B230208H11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12925444-2	chr18	12924944	12925944	+	837.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207530, intron 4 of 27)	intron (NM_207530, intron 4 of 27)	16397.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72164613-2	chr5	72164113	72165113	+	837.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356612, intron 1 of 3)	L1M5|LINE|L1	3576.0	NM_001356611	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71378182-4	chr2	71377651	71378651	+	837.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-10597.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127059966-8	chr10	127059425	127060425	+	837.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033262, exon 1 of 4)	5' UTR (NM_001033262, exon 1 of 4)	259.0	NM_001033262	216438.0	Mm.37892	NM_001033262	ENSMUSG00000040502	March9	AI608492|BC019560	membrane-associated ring finger (C3HC4) 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69509293-2	chr12	69508793	69509793	+	837.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33743.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-47274932-2	chr10	47274432	47275432	+	837.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	1030183.0	NR_028276	108637.0		NR_028276	ENSMUSG00000096263	Snord14c	Gm23107|Rnu14|U14	small nucleolar RNA, C/D box 14C	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65572824-2	chr9	65572324	65573324	+	837.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 2 of 5)	B1_Mur1|SINE|Alu	7263.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31561886-2	chr15	31561386	31562386	+	837.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-6947.0	NM_181588	69574.0	Mm.28108	NM_181588	ENSMUSG00000022235	Cmbl	2310016A09Rik	carboxymethylenebutenolidase-like (Pseudomonas)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-14898220-2	chr9	14897720	14898720	+	837.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176807, intron 4 of 4)	intron (NM_176807, intron 4 of 4)	5731.0	NM_176807	64931.0	Mm.86738	NM_022888	ENSMUSG00000031933	Izumo1r	0910001L11Rik|C86255|Folbp3|Folr4|Juno	IZUMO1 receptor, JUNO	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-79569815-4	chr17	79569318	79570318	+	837.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45082.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10847682-2	chr19	10847182	10848182	+	837.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023044, intron 1 of 7)	intron (NM_023044, intron 1 of 7)	5138.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83220198-2	chr17	83219698	83220698	+	837.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134117, intron 2 of 6)	intron (NM_134117, intron 2 of 6)	4915.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3887471-2	chr12	3886971	3887971	+	837.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 6 of 22)	intron (NM_007872, intron 6 of 22)	-4273.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81363705-2	chr10	81363205	81364205	+	837.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001014836)	TTS (NM_001014836)	2115.0	NM_001014836	432479.0	Mm.440450	NM_001014836	ENSMUSG00000020234	4930404N11Rik	2210409H10Rik|5730551K18Rik|AI854616	RIKEN cDNA 4930404N11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8614962-2	chr11	8614511	8615511	+	837.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	Lx5|LINE|L1	49524.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	0.0	5.0	0.0	0.0	3.5
Merged-chr2-56305112-4	chr2	56304630	56305630	+	837.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-480681.0	NR_105751	102465169.0		NR_105751	ENSMUSG00000098437	Mir195b	Gm27491|mmu-mir-195b	microRNA 195b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28394742-2	chr17	28394242	28395242	+	837.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-29526.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-98321926-2	chr4	98321426	98322426	+	837.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61339.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88243057-2	chr1	88242557	88243557	+	837.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 21 of 41)	intron (NM_001281466, intron 21 of 41)	16037.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25707104-2	chr2	25706604	25707604	+	837.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_023326, exon 1 of 1)	exon (NM_023326, exon 1 of 1)	225.0	NM_023326	107771.0	Mm.330057	NM_023326	ENSMUSG00000049086	Bmyc	2900002K07Rik|AW060705|Mycb	brain expressed myelocytomatosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71660828-4	chr2	71660336	71661336	+	837.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	Arthur1|DNA|hAT-Tip100	-58581.0	NR_037979	381371.0	Mm.330284	NM_201366	ENSMUSG00000064263	Platr26	Gm1631	pluripotency associated transcript 26	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44058914-4	chr16	44058402	44059402	+	837.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16894.0	NM_001359085	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-56074578-2	chr16	56074078	56075078	+	837.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025483)	promoter-TSS (NM_025483)	-826.0	NM_025483	66315.0	Mm.255784	NM_025483	ENSMUSG00000052917	Senp7	2410152H17Rik|2810413I22Rik|2900036C23Rik|6030449K19Rik|AI790676	SUMO1/sentrin specific peptidase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143058343-3	chr7	143057784	143058784	+	837.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133655, intron 1 of 7)	intron (NM_133655, intron 1 of 7)	-4598.0	NR_110354	97423.0	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79934042-5	chr15	79933577	79934577	+	837.483337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1431.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	4.0	8.0	15.0	1.5	1.0	4.0
Merged-chr1-47934593-3	chr1	47934196	47935196	+	837.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-467571.0	NR_105768	102466969.0		NR_105768	ENSMUSG00000098876	Mir6350	Gm27958|mmu-mir-6350	microRNA 6350	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-53344887-4	chr10	53344356	53345356	+	837.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001141927, exon 3 of 3)	3' UTR (NM_001141927, exon 3 of 3)	7170.0	NM_001141927	18821.0	Mm.34145	NM_023129	ENSMUSG00000038583	Pln	Plb	phospholamban	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18917534-4	chr2	18917026	18918026	+	837.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	80595.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125142206-2	chr5	125141706	125142706	+	837.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011424, intron 1 of 46)	intron (NM_011424, intron 1 of 46)	37008.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132879688-2	chr4	132879173	132880173	+	837.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133887, intron 1 of 8)	intron (NM_133887, intron 1 of 8)	4785.0	NM_133887	100226.0	Mm.28237	NM_133887	ENSMUSG00000028879	Stx12	AI850350|AU041521|Stx13	syntaxin 12	protein-coding	9.5	26.5	8.0	10.5	15.5	20.5
Merged-chr2-152471163-2	chr2	152470663	152471663	+	837.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR18-int|LTR|ERVK	-5900.0	NM_176950	319579.0	Mm.190454	NM_176950	ENSMUSG00000049560	Defb20	9230107O10Rik|BD-20|mBD-20	defensin beta 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64400498-2	chr13	64400127	64401127	+	837.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30107.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	4.0	1.0	1.5	3.0	3.0	3.0
Merged-chr2-124725566-2	chr2	124725066	124726066	+	837.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71985.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-81493387-3	chr17	81492887	81493887	+	837.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	245000.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91090431-3	chr2	91089924	91090924	+	837.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-6254.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	11.5	29.5	20.5	5.5	7.5	9.0
Merged-chr7-4964469-4	chr7	4963967	4964967	+	837.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146329)	promoter-TSS (NM_001146329)	-119.0	NM_001146329	381836.0	Mm.297829	NM_001146329	ENSMUSG00000030433	Sbk2	Gm1079|Sgk069	SH3-binding domain kinase family, member 2	protein-coding	7.0	4.5	2.0	2.0	3.5	0.0
Merged-chr6-120539313-4	chr6	120538833	120539833	+	837.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8034.0	NM_144815	214932.0	Mm.255322	NM_144815	ENSMUSG00000058979	Hdhd5	A930002G03Rik|Cecr5	haloacid dehalogenase like hydrolase domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70792656-4	chr11	70792175	70793175	+	837.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045526, intron 4 of 4)	MLT1A1|LTR|ERVL-MaLR	19886.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64341127-4	chr5	64340620	64341620	+	837.345825	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 17 of 18)	MLT2B3|LTR|ERVL	110763.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	24.0	94.5	42.5	6.0	26.0	15.0
Merged-chr18-66474764-2	chr18	66474264	66475264	+	837.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16160.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-174354857-4	chr1	174354333	174355333	+	837.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14086.0	NM_207137	258238.0	Mm.377274	NM_207137	ENSMUSG00000066672	Olfr417	GA_x5J8B7W3B3M-312879-313274|GA_x6K02T2P20D-20787051-20786119|MOR267-11	olfactory receptor 417	protein-coding	0.5	6.0	4.5	1.5	8.5	5.0
Merged-chr5-52435697-3	chr5	52435208	52436208	+	837.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001256059, exon 3 of 12)	exon (NM_001256059, exon 3 of 12)	-5451.0	NR_152197	100041805.0	Mm.417070	NR_152197		Gm3519	Gm43683	predicted gene 3519	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11548241-3	chr2	11547753	11548753	+	837.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	ID4|SINE|ID	5676.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-33807044-3	chr18	33806544	33807544	+	837.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013512, intron 19 of 23)	intron (NM_013512, intron 19 of 23)	12152.0	NR_038151	69749.0	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	0.0	0.0	0.5	1.5	1.0	0.0
Merged-chr3-69179880-3	chr3	69179387	69180387	+	837.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-42532.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	3.0	5.5	4.5	4.5	6.5	9.0
Merged-chr7-122233788-3	chr7	122233266	122234266	+	837.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	14270.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38433920-3	chr2	38433420	38434420	+	837.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-77777.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72145676-3	chr6	72145208	72146208	+	837.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 4 of 6)	Tigger5b|DNA|TcMar-Tigger	-22511.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4079499-6	chr16	4079037	4080037	+	837.327759	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1727.0	NM_026508	68015.0	Mm.123366	NM_026508	ENSMUSG00000005981	Trap1	2410002K23Rik|HSP75	TNF receptor-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61907057-4	chr9	61906475	61907475	+	837.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7535.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55437406-4	chr13	55436914	55437914	+	837.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY5_I-int|LTR|ERVK	-7658.0	NM_001286063	26385.0	Mm.10193	NM_011938	ENSMUSG00000074886	Grk6	Gprk6	G protein-coupled receptor kinase 6	protein-coding	4.0	16.0	7.5	0.0	25.0	6.5
Merged-chr9-45829330-4	chr9	45828844	45829844	+	837.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081373)	promoter-TSS (NM_001081373)	-706.0	NM_001081373	214552.0	Mm.260103	NM_172531	ENSMUSG00000043987	Cep164	AI450905|BC027092|D030051D21|mKIAA1052	centrosomal protein 164	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16064498-9	chr19	16064007	16065007	+	837.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68324.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	6.0	19.0	7.5	3.5	9.5	1.0
Merged-chr1-191314104-3	chr1	191313602	191314602	+	837.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025424, intron 1 of 3)	intron (NM_025424, intron 1 of 3)	4016.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	2.0	9.5	7.0	1.5	9.5	5.5
Merged-chr10-126330729-3	chr10	126330219	126331219	+	837.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	364500.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	0.0	0.5	1.0	0.0	0.0	1.0
Merged-chr5-146811223-3	chr5	146810726	146811726	+	837.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16270.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	24.0	45.0	27.5	3.5	6.5	9.0
Merged-chr4-53307367-4	chr4	53306868	53307868	+	837.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37136.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76304869-4	chr16	76304374	76305374	+	837.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358238, intron 3 of 3)	intron (NM_001358238, intron 3 of 3)	68175.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-14459994-2	chr10	14459493	14460493	+	837.25	f0_balb.idr|f0_c57.idr	intron (NM_001002268, intron 4 of 24)	intron (NM_001002268, intron 4 of 24)	85043.0	NM_001002268	215798.0	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70711923-2	chr8	70711410	70712410	+	837.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6633.0	NM_001195253	100502950.0	Mm.52981	NM_001195253	ENSMUSG00000095026	Gm3336	100041434|2410018E23Rik	predicted gene 3336	protein-coding	0.0	4.0	1.0	0.0	0.0	0.0
Merged-chr5-109551240-4	chr5	109550836	109551836	+	837.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7657.0	NM_016715	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	2.0	3.0	5.5	2.5	0.0	4.0
Merged-chr14-62466526-4	chr14	62466012	62467012	+	837.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10223.0	NM_172810	239134.0	Mm.236557	NM_172810	ENSMUSG00000021933	Gucy1b2	B930025B03|GC-SB2	guanylate cyclase 1, soluble, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54231380-2	chr14	54230921	54231921	+	837.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	22508.0	NM_001113358	13135.0	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	6.5	3.0	0.5	1.0	1.5	1.5
Merged-chr17-67343756-2	chr17	67343256	67344256	+	837.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	10703.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	50.5	88.5	47.0	21.0	26.0	20.0
Merged-chr3-122985724-2	chr3	122985224	122986224	+	837.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1277.0	NM_133857	99526.0	Mm.491248	NM_133857	ENSMUSG00000039701	Usp53	AA939927|Phxr3|Sp6|mKIAA1350|mbo	ubiquitin specific peptidase 53	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-71140330-4	chr9	71139858	71140858	+	837.237488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073483, intron 1 of 6)	intron (NR_073483, intron 1 of 6)	22275.0	NM_001271843	64008.0	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106561275-4	chr8	106560771	106561771	+	837.233337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25872.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166711104-4	chr2	166710611	166711611	+	837.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	2721.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122740083-3	chr6	122739589	122740589	+	837.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011401, intron 2 of 9)	intron (NM_011401, intron 2 of 9)	2656.0	NM_011401	20527.0	Mm.395108	NM_011401	ENSMUSG00000003153	Slc2a3	AA408729|AL023014|AL024341|AU040424|C78366|Glut-3|Glut3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-89445362-3	chr7	89444865	89445865	+	837.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	19059.0	NR_102276	101521.0	Mm.26902	NR_102276	ENSMUSG00000109311	AI314278	-	expressed sequence AI314278	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-92563076-3	chr2	92562581	92563581	+	837.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29125.0	NR_106080	102466819.0		NR_106080	ENSMUSG00000099223	Mir7221	Gm27378|mmu-mir-7221	microRNA 7221	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119807951-4	chr8	119807439	119808439	+	837.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29523.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55811840-4	chr4	55811346	55812346	+	837.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-279371.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54824291-5	chr13	54823783	54824783	+	837.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34878.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133206115-3	chr4	133205689	133206689	+	837.188904	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	6347.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	7.5	31.0	11.0	10.5	38.5	25.0
Merged-chr12-104228444-3	chr12	104227946	104228946	+	837.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009251, intron 3 of 6)	intron (NM_009251, intron 3 of 6)	-7701.0	NM_001353612	20715.0	Mm.312628	NM_009251		Serpina3g	2A2|AI119734|Spi2-1|Spi2/eb.1|Spi2A|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3G	protein-coding	10.5	41.5	31.0	50.0	18.5	30.5
Merged-chr9-21012061-4	chr9	21011599	21012599	+	837.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3841.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5912216-4	chr19	5911786	5912786	+	837.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011262, intron 1 of 10)	CpG	585.0	NM_011262	19708.0	Mm.2651	NM_011262	ENSMUSG00000024826	Dpf2	2210010M07Rik|BAF45D|Req|ubi-d4	D4, zinc and double PHD fingers family 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-57891873-2	chr14	57891373	57892373	+	837.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1537.0	NM_001360097	75965.0	Mm.29044	NM_029492	ENSMUSG00000021969	Zdhhc20	4930542A17Rik|5033406L14Rik|AI448102|B230110O18Rik|HK11	zinc finger, DHHC domain containing 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116867628-2	chr11	116867190	116868190	+	837.142822	f1_balb.idr|f1_c57bl6.idr	intron (NM_178620, intron 9 of 12)	B2_Mm2|SINE|B2	13690.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	58.0	132.0	100.0	60.0	113.5	91.5
Merged-chr2-10049391-6	chr2	10048885	10049885	+	837.138916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027748)	promoter-TSS (NM_027748)	-776.0	NM_027748	209361.0	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-31868125-4	chr11	31867622	31868622	+	837.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2818.0	NM_001290676	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	12.0	4.0	30.0	11.5	4.5	3.0
Merged-chr6-13837128-4	chr6	13836566	13837566	+	837.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001330666, exon 4 of 4)	5' UTR (NM_001330666, exon 4 of 4)	2876.0	NM_001330666	64450.0	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-34541189-4	chr15	34540670	34541670	+	837.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45859.0	NM_152894	67724.0	Mm.248779	NM_026340	ENSMUSG00000022325	Pop1	4932434G09Rik	processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109439437-3	chr3	109438928	109439928	+	837.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	98745.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	15.0	7.5	5.5	3.0	4.0	14.0
Merged-chr17-35915755-4	chr17	35915253	35916253	+	837.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361455, intron 1 of 5)	intron (NM_001361455, intron 1 of 5)	687.0	NM_001361455	66973.0	Mm.29484	NM_025878	ENSMUSG00000024436	Mrps18b	2400002C15Rik|MRP-S18-2|S18mt-b	mitochondrial ribosomal protein S18B	protein-coding	18.5	24.0	45.5	19.5	25.0	51.0
Merged-chr17-84058219-2	chr17	84057719	84058719	+	837.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20441.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-73650569-4	chr16	73650066	73651066	+	837.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	691501.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17416336-4	chr10	17415827	17416827	+	837.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-306901.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56159927-4	chr17	56159471	56160471	+	837.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2520.0	NM_025566	66443.0	Mm.2312	NM_025566	ENSMUSG00000044469	Tnfaip8l1	2600017J23Rik|TIPE1	tumor necrosis factor, alpha-induced protein 8-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66661772-4	chr7	66661286	66662286	+	837.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080443, intron 4 of 5)	B3A|SINE|B2	27775.0	NM_080443	117589.0	Mm.34785	NM_080443	ENSMUSG00000030509	Asb7	AI449039|Asb-7|D030055C23Rik	ankyrin repeat and SOCS box-containing 7	protein-coding	0.0	6.0	0.0	0.0	6.0	0.0
Merged-chr7-142392032-4	chr7	142391531	142392531	+	837.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5a|LINE|L1	-4161.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64081459-3	chr1	64080951	64081951	+	837.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	-38950.0	NR_105864	102466760.0		NR_105864	ENSMUSG00000098487	Mir6899	Gm27384|mmu-mir-6899	microRNA 6899	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56747553-3	chr19	56747061	56748061	+	837.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	25189.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59426957-3	chr15	59426459	59427459	+	837.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 3 of 4)	intron (NM_001164604, intron 3 of 4)	52761.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87849895-4	chr6	87849414	87850414	+	837.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355195, intron 1 of 4)	intron (NM_001355195, intron 1 of 4)	1192.0	NM_001109745	12785.0	Mm.290251	NM_013493	ENSMUSG00000030057	Cnbp	AA408710|Cnbp1|Znf9	cellular nucleic acid binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49199895-7	chr13	49199379	49200379	+	837.028564	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12332.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90030362-1	chr7	90029862	90030862	+	837.0	f0_balb.idr	intron (NR_110365, intron 1 of 5)	intron (NR_110365, intron 1 of 5)	1203.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	1.0	1.0	3.5	0.0	2.0	4.0
Merged-chr5-41770693-2	chr5	41770193	41771193	+	837.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-6473.0	NM_007524	12020.0	Mm.2530	NM_007524	ENSMUSG00000049691	Nkx3-2	Bapx1|NKX3.2|Nkx-3.2	NK3 homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87566724-2	chr3	87566218	87567218	+	837.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	41140.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	39.5	45.0	59.5	20.5	9.5	1.5
Merged-chr12-49798898-2	chr12	49798398	49799398	+	837.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-318036.0	NR_045472	69054.0	Mm.417838	NR_045472	ENSMUSG00000100844	1810007C17Rik	-	RIKEN cDNA 1810007C17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-115616155-4	chr7	115615656	115616656	+	837.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025559, intron 7 of 15)	intron (NM_001025559, intron 7 of 15)	185453.0	NM_001277328	20679.0	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4936598-2	chr7	4936098	4937098	+	837.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_173008, exon 10 of 14)	exon (NM_173008, exon 10 of 14)	10754.0	NM_173008	269855.0	Mm.44190	NM_173008	ENSMUSG00000035279	Ssc5d	A430110N23Rik|S5D-SRCRB	scavenger receptor cysteine rich family, 5 domains	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146949530-2	chr5	146949041	146950041	+	837.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025652, intron 1 of 8)	B1_Mus2|SINE|Alu	884.0	NM_025652	66596.0	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	9.0	13.0	17.5	4.5	17.0	25.5
Merged-chr13-117220802-4	chr13	117220343	117221343	+	837.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010330, exon 1 of 9)	5' UTR (NM_010330, exon 1 of 9)	270.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0.0	0.0	0.0	1.0	0.0	0.5
Merged-chr7-3816650-1	chr7	3816150	3817150	+	837.0	f0_c57.idr	intron (NM_001289428, intron 11 of 12)	intron (NM_001289428, intron 11 of 12)	28401.0	NM_011089	18725.0	Mm.482470	NM_011089	ENSMUSG00000089942	Pira2	6M23	paired-Ig-like receptor A2	protein-coding	3.5	3.5	2.5	0.0	7.0	3.5
Merged-chr18-82542910-2	chr18	82542410	82543410	+	837.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025245, intron 3 of 3)	ID_B1|SINE|B4	-11553.0	NM_001025258	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.0	2.0	0.0	0.0	2.0	0.0
Merged-chr2-37757193-3	chr2	37756676	37757676	+	837.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19073.0	NM_001163566	241324.0	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107182743-2	chr13	107182243	107183243	+	837.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	160173.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125567294-1	chr7	125566794	125567794	+	837.0	f1_balb.idr	exon (NM_001008700, exon 4 of 11)	exon (NM_001008700, exon 4 of 11)	15012.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	0.0	2.5	0.0	0.0	1.0	1.0
Merged-chr19-38361705-1	chr19	38361205	38362205	+	837.0	f0_balb.idr	Intergenic	L1_Rod|LINE|L1	-34275.0	NM_175507	240660.0	Mm.262085	NM_175507	ENSMUSG00000044026	Slc35g1	AA590464|D330039I19Rik|Tmem20	solute carrier family 35, member G1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65955379-2	chr5	65954879	65955879	+	837.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11745.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148608759-2	chr4	148608235	148609235	+	837.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003893, intron 7 of 10)	intron (NM_001003893, intron 7 of 10)	6191.0	NM_001003893	17175.0	Mm.378962	NM_010767	ENSMUSG00000028979	Masp2	MASP-2|MAp19	mannan-binding lectin serine peptidase 2	protein-coding	1.0	7.5	1.5	0.0	18.0	2.5
Merged-chr1-121327382-2	chr1	121326882	121327882	+	837.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178082, intron 1 of 5)	intron (NM_178082, intron 1 of 5)	296.0	NM_001271531	72999.0	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	2.5	11.0	3.5	4.5	4.0	0.5
Merged-chr12-36119470-4	chr12	36118936	36119936	+	837.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025840, intron 5 of 11)	intron (NM_025840, intron 5 of 11)	29057.0	NR_003649	432649.0	Mm.347860	NM_001014396	ENSMUSG00000059301	Gm5434	EG432649	ubiquitin-conjugating enzyme E2F (putative) pseudogene	pseudo	20.5	27.0	10.5	1.5	3.5	3.0
Merged-chr11-107511408-2	chr11	107510908	107511908	+	837.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31880.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	1.5	0.5	0.0	3.0	1.0	4.0
Merged-chr14-121795907-2	chr14	121795407	121796407	+	837.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134074, intron 1 of 52)	intron (NM_134074, intron 1 of 52)	1827.0	NM_134074	105445.0	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68692761-2	chr11	68692261	68693261	+	837.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175260, intron 1 of 40)	intron (NM_175260, intron 1 of 40)	846.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158534345-3	chr2	158533844	158534844	+	837.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145015, intron 5 of 14)	intron (NM_001145015, intron 5 of 14)	21548.0	NM_001145015	545481.0	Mm.125371	NM_001145015	ENSMUSG00000074625	Arhgap40	C20orf95|Gm14203	Rho GTPase activating protein 40	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr10-127265960-2	chr10	127265460	127266460	+	837.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190454)	promoter-TSS (NM_001190454)	-302.0	NM_027151	69654.0	Mm.167537	NM_027151	ENSMUSG00000025410	Dctn2	2310042E05Rik|C130077D06Rik|C87049|DCTN-50|GMP23-48K|RBP50|p50	dynactin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84424514-1	chr8	84424014	84425014	+	837.0	f1_c57bl6.idr	intron (NM_001252060, intron 1 of 47)	intron (NM_001252060, intron 1 of 47)	9150.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	0.0	4.5	0.0	0.0	1.0	1.0
Merged-chr12-83592556-2	chr12	83592056	83593056	+	837.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359167, intron 3 of 12)	RSINE1|SINE|B4	4666.0	NM_001359167	217695.0	Mm.59257	NM_183154	ENSMUSG00000042628	Zfyve1	DFCP1|G630053K23|TAFF1|ZNFN2A1|mKIAA1589	zinc finger, FYVE domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19890050-2	chr7	19889550	19890550	+	837.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2085.0	NM_177036	319930.0	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-15300188-3	chr9	15299691	15300691	+	837.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199485, intron 2 of 8)	B3|SINE|B2	1416.0	NM_133732	70984.0	Mm.261842	NM_133732	ENSMUSG00000031938	4931406C07Rik	-	RIKEN cDNA 4931406C07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8871148-2	chr10	8870687	8871687	+	837.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	14883.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	30.0	46.0	44.0	19.0	37.0	21.0
Merged-chr11-107323999-2	chr11	107323499	107324499	+	837.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	-134618.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-29853391-4	chr3	29852887	29853887	+	837.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37630.0	NR_110437	102636083.0		NR_110437	ENSMUSG00000102590	Mannr	Manr	Mecom adjacent non-protein coding RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5098921-2	chr18	5098421	5099421	+	837.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153153, exon 25 of 35)	exon (NM_153153, exon 25 of 35)	52332.0	NM_001347449	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97315228-3	chr11	97314741	97315741	+	837.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025927)	promoter-TSS (NM_025927)	-475.0	NM_025927	67036.0	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88980840-2	chr5	88980340	88981340	+	837.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359211, intron 3 of 26)	intron (NM_001359211, intron 3 of 26)	-47126.0	NM_001359212	54403.0	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	1.0	4.0	3.5	1.0	13.5	3.5
Merged-chr4-147461829-2	chr4	147461329	147462329	+	837.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	-91448.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25323943-1	chr17	25323443	25324443	+	837.0	f1_c57bl6.idr	Intergenic	Intergenic	5289.0	NM_053260	114662.0	Mm.207082	NM_053260	ENSMUSG00000034039	Prss29	D19363|Isp2|mISP-2	protease, serine 29	protein-coding	0.0	0.0	1.5	6.5	16.5	8.5
Merged-chr6-83708299-4	chr6	83707803	83708803	+	837.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_075094, intron 1 of 2)	intron (NR_075094, intron 1 of 2)	2522.0	NR_075094	574519.0	Mm.487605	NR_002871	ENSMUSG00000085794	Vax2os	Vas2os|Vax2os1|Vax2os2	ventral anterior homeobox 2, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139686878-1	chr5	139686378	139687378	+	837.0	f1_c57bl6.idr	Intergenic	Intergenic	49455.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	0.0	0.0	1.0	0.0	3.0	0.0
Merged-chr9-32542470-3	chr9	32541971	32542971	+	837.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1019.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157052121-2	chr2	157051621	157052621	+	837.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164663, intron 3 of 14)	ID4_|SINE|ID	27144.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107731088-1	chr4	107730588	107731588	+	837.0	f0_balb.idr	Intergenic	Intergenic	-46926.0	NM_019872	56296.0	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	0.5	13.5	1.5	2.5	12.0	8.0
Merged-chr11-5261222-1	chr11	5260722	5261722	+	837.0	f0_c57.idr	intron (NM_032396, intron 1 of 8)	CpG	388.0	NM_032396	84035.0	Mm.209989	NM_032396	ENSMUSG00000020393	Kremen1	AV002070|Kremen|Krm1	kringle containing transmembrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113484121-2	chr6	113483621	113484621	+	837.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_134159)	TTS (NM_134159)	765.0	NR_145485	171508.0	Mm.41593	NM_133930	ENSMUSG00000030284	Creld1	AI843811|i11E7	cysteine-rich with EGF-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32607425-4	chr2	32606927	32607927	+	837.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025310, intron 1 of 5)	intron (NM_001025310, intron 1 of 5)	442.0	NR_110347	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-143132077-4	chr6	143131566	143132566	+	836.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153819, intron 7 of 8)	L2|LINE|L2	21865.0	NR_153819	102633311.0	Mm.333484	NR_153819		Gm31108	Gm31169	predicted gene, 31108	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59180849-4	chr11	59180339	59181339	+	836.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080454, intron 1 of 1)	L1MD3|LINE|L1	1987.0	NM_175452	118454.0	Mm.40016	NM_080454	ENSMUSG00000043448	Gjc2	B230382L12Rik|Cx47|Gja12	gap junction protein, gamma 2	protein-coding	11.0	18.5	17.5	5.0	22.0	14.0
Merged-chr3-107785443-4	chr3	107784951	107785951	+	836.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24982.0	NM_001113529	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	5.5	7.0	3.0	0.0	3.5	5.0
Merged-chr2-34371352-3	chr2	34370884	34371884	+	836.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290576, intron 1 of 7)	CpG	661.0	NM_001290576	18516.0	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-89695543-3	chr10	89695105	89696105	+	836.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130956, intron 2 of 2)	intron (NR_130956, intron 2 of 2)	9242.0	NR_130956	69002.0	Mm.293947	NR_130956	ENSMUSG00000097383	1500026H17Rik	-	RIKEN cDNA 1500026H17 gene	ncRNA	6.5	11.5	16.0	5.0	19.0	13.0
Merged-chr2-58489738-4	chr2	58489233	58490233	+	836.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355048, intron 3 of 10)	intron (NM_001355048, intron 3 of 10)	71677.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-89022519-4	chr11	89022010	89023010	+	836.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	23107.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	13.5	47.0	45.5	26.0	17.0	27.5
Merged-chr1-88247993-2	chr1	88247493	88248493	+	836.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 26 of 41)	ORR1F|LTR|ERVL-MaLR	20973.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16402070-3	chr7	16401577	16402577	+	836.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198631, intron 1 of 13)	intron (NM_198631, intron 1 of 13)	881.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59548649-2	chr11	59548149	59549149	+	836.875	f1_balb.idr|f1_c57bl6.idr	exon (NM_145827, exon 4 of 10)	exon (NM_145827, exon 4 of 10)	5963.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11121323-5	chr19	11120813	11121813	+	836.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027058, intron 1 of 6)	intron (NM_027058, intron 1 of 6)	9565.0	NM_027058	69369.0	Mm.391200	NM_027058	ENSMUSG00000024729	1700017D01Rik	-	RIKEN cDNA 1700017D01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100493539-2	chr13	100493039	100494039	+	836.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022011)	promoter-TSS (NM_022011)	-930.0	NM_022011	23894.0	Mm.272533	NM_022011	ENSMUSG00000021639	Gtf2h2	44kDa|BTF2 p44|BTF2-p44|Btf2p44|p44	general transcription factor II H, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122459401-2	chr8	122458901	122459901	+	836.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013914, intron 1 of 2)	intron (NM_013914, intron 1 of 2)	1291.0	NM_013914	30927.0	Mm.103673	NM_013914	ENSMUSG00000006587	Snai3	AI643946|Smuc|Zfp293	snail family zinc finger 3	protein-coding	4.0	0.0	0.5	0.0	5.5	2.5
Merged-chr19-12564406-4	chr19	12563924	12564924	+	836.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-9086.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	24.5	32.5	25.5	19.5	29.5	13.5
Merged-chr14-33398703-2	chr14	33398203	33399203	+	836.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310452, intron 4 of 10)	intron (NM_001310452, intron 4 of 10)	12321.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83724737-4	chr7	83724207	83725207	+	836.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 1 of 18)	intron (NM_001360088, intron 1 of 18)	7691.0	NM_001360087	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0.0	4.0	2.0	0.5	7.5	2.0
Merged-chr14-14673460-3	chr14	14672942	14673942	+	836.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29583.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	1.0	3.0	4.0	3.0	3.0	11.5
Merged-chr6-34385158-2	chr6	34384658	34385658	+	836.833313	f1_balb.idr|f1_c57bl6.idr	intron (NR_149754, intron 1 of 9)	intron (NR_149754, intron 1 of 9)	911.0	NR_149754	67861.0	Mm.70371	NM_172398	ENSMUSG00000061758	Akr1b10	2310005E10Rik|Akr1b16	aldo-keto reductase family 1, member B10 (aldose reductase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123504521-3	chr9	123504034	123505034	+	836.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013860, intron 2 of 7)	intron (NM_013860, intron 2 of 7)	-25219.0	NM_001357485	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149791725-4	chr4	149791246	149792246	+	836.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17479.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191268006-6	chr1	191267524	191268524	+	836.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43570.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	3.0	7.0	2.5	0.0	9.0	5.5
Merged-chr18-61498549-2	chr18	61498049	61499049	+	836.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_177828, intron 11 of 12)	intron (NM_177828, intron 11 of 12)	-13942.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117217017-4	chr10	117216512	117217512	+	836.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026570, intron 6 of 6)	intron (NM_026570, intron 6 of 6)	7495.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-149261039-4	chr6	149260508	149261508	+	836.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48406.0	NM_001289661	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21068827-3	chr14	21068314	21069314	+	836.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134079, intron 1 of 10)	intron (NM_134079, intron 1 of 10)	-7338.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172316071-2	chr1	172315636	172316636	+	836.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_080419, intron 1 of 6)	intron (NM_080419, intron 1 of 6)	3769.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	3.0	7.0	8.5	6.0	12.5	16.5
Merged-chr5-118269172-4	chr5	118268667	118269667	+	836.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23940.0	NM_001081236	76792.0	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	4.0	0.0	0.0	3.0	2.5	1.0
Merged-chr13-16145799-2	chr13	16145299	16146299	+	836.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-122376.0	NR_155430	100503142.0	Mm.359204	NR_155430		B230303A05Rik	B230303A05|EG328191	U1 small nuclear ribonucleoprotein 1C pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-84735977-4	chr16	84735479	84736479	+	836.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017404)	promoter-TSS (NM_017404)	-677.0	NM_017404	27393.0	Mm.103655	NM_017404	ENSMUSG00000022889	Mrpl39	C21orf8|MRP-L5|ORF22|Rpml5	mitochondrial ribosomal protein L39	protein-coding	51.0	69.0	46.5	23.0	12.5	12.5
Merged-chr1-150372112-3	chr1	150371610	150372610	+	836.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145511, exon 12 of 14)	exon (NM_145511, exon 12 of 14)	-20728.0	NM_133780	108989.0	Mm.174256	NM_133780	ENSMUSG00000006005	Tpr	2610029M07Rik|C77892	translocated promoter region, nuclear basket protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91959054-3	chr2	91958510	91959510	+	836.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138306, intron 1 of 30)	intron (NM_138306, intron 1 of 30)	4553.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	3.5	3.0	0.0	3.5	1.5	0.0
Merged-chr4-95884961-3	chr4	95884464	95885464	+	836.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113412, intron 14 of 15)	intron (NM_001113412, intron 14 of 15)	82071.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	4.0	2.5	0.0	0.0	0.0	1.5
Merged-chr10-12956735-2	chr10	12956235	12957235	+	836.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_029075, intron 1 of 2)	intron (NM_029075, intron 1 of 2)	7524.0	NM_029075	74732.0	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98320210-4	chr12	98319686	98320686	+	836.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51551.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33429523-4	chr2	33428987	33429987	+	836.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085507, intron 1 of 2)	L2a|LINE|L2	1837.0	NM_001085507	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97296883-2	chr6	97296372	97297372	+	836.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 21 of 23)	intron (NM_145148, intron 21 of 23)	-44092.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	6.5	5.0	6.0	5.5	28.0	19.0
Merged-chr6-34016076-4	chr6	34015540	34016540	+	836.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13408.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94011447-4	chr16	94010930	94011930	+	836.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2593.0	NM_019500	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	0.0	0.0	0.0	0.0	5.0	0.0
Merged-chr3-51275261-2	chr3	51274761	51275761	+	836.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 4 of 9)	B3|SINE|B2	-1500.0	NR_073429	67746.0	Mm.441177	NR_073429	ENSMUSG00000087440	4930577N17Rik	-	RIKEN cDNA 4930577N17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45516655-2	chr17	45516202	45517202	+	836.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358000, intron 10 of 20)	intron (NM_001358000, intron 10 of 20)	-6732.0	NM_013688	21645.0	Mm.491193	NM_013688	ENSMUSG00000023949	Tcte1	D17Sil1|Tcte-1	t-complex-associated testis expressed 1	protein-coding	0.0	2.5	0.0	0.0	3.5	2.5
Merged-chr8-8198638-3	chr8	8198132	8199132	+	836.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	462141.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62040538-6	chr15	62039979	62040979	+	836.722229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	1222.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-105186895-4	chr9	105186374	105187374	+	836.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172461, intron 15 of 15)	intron (NM_172461, intron 15 of 15)	-41792.0	NM_028562	73532.0	Mm.23516	NM_028562	ENSMUSG00000032566	1700080E11Rik	AI429110|Tseg8	RIKEN cDNA 1700080E11 gene	protein-coding	0.0	5.5	1.0	5.5	21.5	7.0
Merged-chr3-103805395-4	chr3	103804903	103805903	+	836.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040412, intron 4 of 4)	intron (NR_040412, intron 4 of 4)	2274.0	NR_040412	100503157.0	Mm.445554	NR_040412	ENSMUSG00000084997	Gm15471	-	predicted gene 15471	ncRNA	19.0	54.0	49.0	31.5	43.0	56.0
Merged-chr6-97511845-4	chr6	97511350	97512350	+	836.696411	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-24030.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	31.5	98.0	70.0	20.5	40.0	54.5
Merged-chr7-127110836-3	chr7	127110335	127111335	+	836.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133686, intron 1 of 3)	intron (NM_133686, intron 1 of 3)	11194.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-128750040-3	chr1	128749560	128750560	+	836.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-157761.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.0	4.0	4.0	5.0	5.5	7.5
Merged-chr8-124793406-3	chr8	124792874	124793874	+	836.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_198632, exon 1 of 10)	5' UTR (NM_198632, exon 1 of 10)	355.0	NM_198632	330863.0	Mm.422769	NM_198632	ENSMUSG00000036913	Trim67	D130049O21Rik|TNL	tripartite motif-containing 67	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36024297-3	chr17	36023819	36024819	+	836.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015618, intron 1 of 1)	intron (NR_015618, intron 1 of 1)	-3759.0	NM_008207	15042.0	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	6.5	21.5	13.0	12.0	7.0	5.0
Merged-chr1-74854883-2	chr1	74854383	74855383	+	836.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009872)	promoter-TSS (NM_009872)	-146.0	NM_009872	12570.0	Mm.153833	NM_009872	ENSMUSG00000090071	Cdk5r2	B230310J22Rik|p39	cyclin-dependent kinase 5, regulatory subunit 2 (p39)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-68557092-1	chr8	68556592	68557592	+	836.666687	f0_balb.idr	5' UTR (NM_001252623, exon 4 of 11)	5' UTR (NM_001252623, exon 4 of 11)	178054.0	NM_001252623	234356.0	Mm.334569	NM_172753	ENSMUSG00000036356	Csgalnact1	4732435N03Rik|CSGalNAcT-1	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding	6.5	7.5	7.5	3.0	0.0	2.0
Merged-chr13-34279144-4	chr13	34278686	34279686	+	836.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	65996.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32638374-3	chr12	32637873	32638873	+	836.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-181962.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123748833-3	chr4	123748332	123749332	+	836.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023423, intron 1 of 4)	intron (NM_023423, intron 1 of 4)	1467.0	NM_023423	68050.0	Mm.27903	NM_023423	ENSMUSG00000023075	Akirin1	6330407G11Rik	akirin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46712069-3	chr17	46711600	46712600	+	836.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145488, exon 1 of 17)	exon (NM_145488, exon 1 of 17)	637.0	NM_145488	224824.0	Mm.299399	NM_145488	ENSMUSG00000002763	Pex6	AI132582|D130055I09Rik|mKIAA4177	peroxisomal biogenesis factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-35870513-3	chr15	35870013	35871013	+	836.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177151, intron 44 of 61)	intron (NM_177151, intron 44 of 61)	67733.0	NM_053071	12864.0	Mm.548	NM_053071	ENSMUSG00000014313	Cox6c	-	cytochrome c oxidase subunit VIc	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13268274-4	chr10	13267747	13268747	+	836.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359294, intron 2 of 11)	GA-rich|Low_complexity|Low_complexity	56042.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-68176964-2	chr17	68176464	68177464	+	836.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96833.0	NM_177278	320858.0	Mm.137356	NM_177278	ENSMUSG00000041565	L3mbtl4	A730037L19Rik|D930040M24Rik	L3MBTL4 histone methyl-lysine binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21836874-4	chr16	21836342	21837342	+	836.645813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42495.0	NR_037957	100043489.0	Mm.326535	NR_037957	ENSMUSG00000097290	1300002E11Rik	1500026P21Rik	RIKEN cDNA 1300002E11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134933035-4	chr5	134932393	134933393	+	836.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359536, intron 2 of 5)	intron (NM_001359536, intron 2 of 5)	369.0	NM_001359537	79565.0	Mm.34235	NM_024479	ENSMUSG00000040557	Mettl27	AW492986|BC002286|Wbscr27	methyltransferase like 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67004937-4	chr10	67004439	67005439	+	836.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110511)	promoter-TSS (NR_110511)	-136.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25305110-3	chr2	25304611	25305611	+	836.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008169, exon 6 of 20)	exon (NM_008169, exon 6 of 20)	13891.0	NM_001242940	320354.0	Mm.445875	NM_001242940		Grin1os	E130003G02Rik	glutamate receptor, ionotropic, NMDA1 (zeta 1), opposite strand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21948236-2	chr19	21947754	21948754	+	836.599976	f0_c57.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	169914.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	10.0	27.5	14.5	0.0	2.5	0.0
Merged-chr2-164909757-4	chr2	164909244	164910244	+	836.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199027, intron 2 of 27)	intron (NM_199027, intron 2 of 27)	2006.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	0.0	0.5	1.0	0.0	5.0	1.0
Merged-chr17-18558963-4	chr17	18558454	18559454	+	836.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR3-int|LTR|ERVK	-22773.0	NM_001104547	433070.0	Mm.215962	NM_001104547	ENSMUSG00000091679	Vmn2r96	EG433070	vomeronasal 2, receptor 96	protein-coding	7.5	4.5	9.5	0.0	2.5	3.0
Merged-chr15-94688283-4	chr15	94687801	94688801	+	836.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178789, intron 2 of 7)	intron (NM_178789, intron 2 of 7)	59116.0	NM_178789	320709.0	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-116957833-4	chr13	116957335	116958335	+	836.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	67681.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-26297568-4	chr6	26297067	26298067	+	836.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	366141.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-121641388-4	chr7	121640892	121641892	+	836.575012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033173)	TTS (NM_001033173)	51489.0	NR_131051	69407.0		NR_131051	ENSMUSG00000108409	1700025J12Rik	-	RIKEN cDNA 1700025J12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-64752987-4	chr14	64752452	64753452	+	836.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081177, intron 21 of 39)	intron (NM_001081177, intron 21 of 39)	100421.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	0.0	4.0	1.5	0.0	0.0	0.0
Merged-chr3-121953777-3	chr3	121953277	121954277	+	836.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172525, intron 1 of 22)	CpG	548.0	NM_172525	214137.0	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94984006-3	chr8	94983486	94984486	+	836.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018882)	promoter-TSS (NM_018882)	-413.0	NM_018882	14766.0	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0.0	0.0	0.0	6.5	1.0	3.0
Merged-chr12-52783164-3	chr12	52782682	52783682	+	836.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198111, intron 1 of 13)	intron (NM_198111, intron 1 of 13)	83799.0	NM_198111	238161.0	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69111962-2	chr11	69111462	69112462	+	836.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-8491.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	8.5	15.5	6.5	0.0	3.0	0.5
Merged-chr6-13895081-2	chr6	13894581	13895581	+	836.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045995, intron 2 of 2)	ORR1C2|LTR|ERVL-MaLR	23512.0	NR_045995	76311.0	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12922189-2	chr18	12921689	12922689	+	836.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207530, intron 4 of 27)	intron (NM_207530, intron 4 of 27)	19652.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65723645-2	chr5	65723145	65724145	+	836.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_I-int|LTR|ERV1	-25789.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	7.0	33.0	21.5	6.5	7.5	11.5
Merged-chr17-42942281-2	chr17	42941781	42942781	+	836.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65857.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74024207-2	chr17	74023707	74024707	+	836.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053188, intron 3 of 4)	ID_B1|SINE|B4	23709.0	NM_053188	94224.0	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107590199-2	chr9	107589699	107590699	+	836.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025903, intron 3 of 11)	intron (NM_025903, intron 3 of 11)	2481.0	NM_025903	15983.0	Mm.215335	NM_025903	ENSMUSG00000010048	Ifrd2	1810034A24Rik|AA470234|AI838527|SKMc15	interferon-related developmental regulator 2	protein-coding	0.0	0.0	0.0	0.0	1.5	3.0
Merged-chr10-81016851-4	chr10	81016364	81017364	+	836.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1939.0	NM_010319	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53638310-2	chr19	53637810	53638810	+	836.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007790, intron 21 of 28)	B2_Mm2|SINE|B2	37914.0	NM_007790	13006.0	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119364293-2	chr13	119363793	119364793	+	836.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308506, intron 12 of 16)	Lx8|LINE|L1	44718.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142453954-2	chr5	142453454	142454454	+	836.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_199068, exon 7 of 9)	exon (NM_199068, exon 7 of 9)	-9977.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79454176-2	chr2	79453676	79454676	+	836.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010894, exon 2 of 2)	exon (NM_010894, exon 2 of 2)	2460.0	NM_010894	18012.0	Mm.4636	NM_010894	ENSMUSG00000034701	Neurod1	BETA2|BHF-1|Nd1|Neurod|bHLHa3	neurogenic differentiation 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-66192568-3	chr2	66192030	66193030	+	836.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001047604, intron 25 of 28)	intron (NM_001047604, intron 25 of 28)	64087.0	NM_001047604	73668.0	Mm.250868	NM_001047604	ENSMUSG00000034848	Ttc21b	2410066K11Rik|Thm1|aln|mKIAA1992	tetratricopeptide repeat domain 21B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32681081-2	chr16	32680581	32681581	+	836.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347185, intron 5 of 6)	intron (NM_001347185, intron 5 of 6)	7927.0	NM_001289443	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0.0	0.0	0.0	6.0	0.0	0.0
Merged-chr1-89235558-1	chr1	89235058	89236058	+	836.5	f0_balb.idr	Intergenic	Intergenic	165143.0	NM_133816	98402.0	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91606106-2	chr16	91605606	91606606	+	836.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8426.0	NM_030018	77975.0	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143065008-2	chr5	143064508	143065508	+	836.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	48012.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147323572-2	chr5	147323072	147324072	+	836.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1132.0	NM_001039678	231903.0	Mm.291286	NM_001039678	ENSMUSG00000075543	Urad	EG231903|Prhoxnb	ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5) decarboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-65076829-2	chr12	65076329	65077329	+	836.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178912, intron 1 of 22)	B1F1|SINE|Alu	1223.0	NM_178912	104806.0	Mm.374847	NM_178912	ENSMUSG00000055884	Fancm	AI427100|C730036B14Rik|D12Ertd364e	Fanconi anemia, complementation group M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140506305-2	chr5	140505805	140506805	+	836.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021528, intron 1 of 1)	intron (NM_021528, intron 1 of 1)	696.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60846877-2	chr18	60846377	60847377	+	836.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011552, intron 1 of 24)	L2a|LINE|L2	2087.0	NM_011552	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	2.5	1.5	0.0	1.5	7.5	0.0
Merged-chr5-19149026-2	chr5	19148526	19149526	+	836.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR1B-int|LTR|ERV1	77529.0	NR_102341	70832.0	Mm.398993	NR_102341	ENSMUSG00000097626	4921504A21Rik	-	RIKEN cDNA 4921504A21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43844755-2	chr5	43844255	43845255	+	836.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-24054.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.0	0.5	2.5	0.0	0.0	0.0
Merged-chr4-132337932-2	chr4	132337432	132338432	+	836.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133878, intron 3 of 9)	intron (NM_133878, intron 3 of 9)	7818.0	NM_001197082	100088.0	Mm.255045	NM_133878	ENSMUSG00000028896	Rcc1	4931417M11Rik|AI326872|Chc1	regulator of chromosome condensation 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-6863066-2	chr3	6862634	6863634	+	836.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm-int|LTR|ERVL-MaLR	-242691.0	NM_027048	69347.0	Mm.45822	NM_027048	ENSMUSG00000069118	1700008P02Rik	-	RIKEN cDNA 1700008P02 gene	protein-coding	2.0	1.5	3.0	2.0	0.0	0.0
Merged-chr10-80897705-2	chr10	80897205	80898205	+	836.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081688, intron 15 of 17)	intron (NM_001081688, intron 15 of 17)	3264.0	NM_013895	30055.0	Mm.142132	NM_013895	ENSMUSG00000020219	Timm13	D10Ertd378e|Tim9|Timm9	translocase of inner mitochondrial membrane 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63073169-2	chr14	63072669	63073669	+	836.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER31B|LTR|ERV1	18096.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52948570-2	chr2	52948070	52949070	+	836.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	B3|SINE|B2	90702.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-141050929-2	chr6	141050429	141051429	+	836.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-198340.0	NM_018779	54611.0	Mm.103728	NM_018779	ENSMUSG00000041741	Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-12589102-4	chr16	12588595	12589595	+	836.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-222295.0	NR_040507	75493.0	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67404546-4	chr5	67404066	67405066	+	836.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164806, intron 3 of 4)	GA-rich|Low_complexity|Low_complexity	23233.0	NM_001164806	666938.0	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	6.5	4.0	1.5	0.0	5.5	1.0
Merged-chr14-30634185-2	chr14	30633685	30634685	+	836.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7977.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191021350-4	chr1	191020836	191021836	+	836.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081259, intron 1 of 9)	intron (NM_001081259, intron 1 of 9)	-4015.0	NR_027298	100125339.0	Mm.472263	NR_027298	ENSMUSG00000097845	A230020J21Rik	-	RIKEN cDNA A230020J21 gene	ncRNA	0.0	0.0	2.5	0.0	0.0	2.5
Merged-chr5-45677861-4	chr5	45677362	45678362	+	836.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019438, intron 7 of 20)	MTD|LTR|ERVL-MaLR	7937.0	NM_019438	54392.0	Mm.32012	NM_019438	ENSMUSG00000015880	Ncapg	5730507H05Rik|Hcapg|MFT.M05.13	non-SMC condensin I complex, subunit G	protein-coding	0.0	1.0	0.5	0.0	0.5	3.0
Merged-chr1-155425978-4	chr1	155425478	155426478	+	836.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8534.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-62757062-3	chr13	62756556	62757556	+	836.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3683.0	NR_030493	751548.0		NR_030493	ENSMUSG00000096098	Mir713	Mirn713|mir-713|mmu-mir-713	microRNA 713	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-36402075-3	chr3	36401560	36402560	+	836.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR41C|LTR|ERV1	73464.0	NR_105976	102466786.0		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-68004082-4	chr17	68003554	68004554	+	836.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172964)	promoter-TSS (NM_172964)	54.0	NM_172964	268970.0	Mm.9935	NM_172964	ENSMUSG00000024043	Arhgap28	AU044757|AW550892|E130310N06	Rho GTPase activating protein 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105395411-4	chr5	105394897	105395897	+	836.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20378.0	NM_001033550	433926.0	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	2210408K08Rik|R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122477064-2	chr8	122476564	122477564	+	836.416626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033142)	promoter-TSS (NM_001033142)	921.0	NR_152823	66965.0	Mm.482288	NM_153775	ENSMUSG00000049482	Ctu2	2310061F22Rik|C16orf84|Ncs2	cytosolic thiouridylase subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152042207-4	chr1	152041854	152042854	+	836.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 1 of 5)	intron (NM_197990, intron 1 of 5)	47966.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11557319-3	chr11	11556817	11557817	+	836.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68051.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	0.0	2.5	3.5	0.0	0.5	0.0
Merged-chr15-67414291-4	chr15	67413788	67414788	+	836.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	187519.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-59238123-4	chr1	59237632	59238632	+	836.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028717)	promoter-TSS (NM_028717)	-901.0	NM_028717	74018.0	Mm.272078	NM_028717	ENSMUSG00000026024	Als2	3222402C23Rik|9430073A21Rik|Als2cr6|Alsin|mKIAA1563	alsin Rho guanine nucleotide exchange factor	protein-coding	39.0	78.5	52.0	22.5	64.0	54.5
Merged-chr15-59081385-6	chr15	59080893	59081893	+	836.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 1 of 14)	CpG	633.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30618398-2	chr14	30617898	30618898	+	836.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	7810.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72155246-4	chr6	72154686	72155686	+	836.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011375)	TTS (NM_011375)	-31989.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32599445-3	chr16	32598947	32599947	+	836.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9449.0	NM_011638	22042.0	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-103122805-3	chr4	103122307	103123307	+	836.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039081, intron 1 of 12)	intron (NM_001039081, intron 1 of 12)	3417.0	NM_001039081	71148.0	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121708980-3	chr9	121708510	121709510	+	836.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1379.0	NM_026794	26901.0	Mm.24848	NM_026794	ENSMUSG00000032526	Ss18l2	1110020I04Rik|AI463209|Deb1	SS18, nBAF chromatin remodeling complex subunit like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100228963-3	chr15	100228452	100229452	+	836.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007497, intron 1 of 6)	intron (NM_007497, intron 1 of 6)	1093.0	NM_007497	11908.0	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	16.5	37.0	41.5	13.0	25.0	26.0
Merged-chr17-78410887-3	chr17	78410380	78411380	+	836.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360407, intron 2 of 9)	intron (NM_001360407, intron 2 of 9)	7272.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-127151010-4	chr6	127150483	127151483	+	836.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009829)	promoter-TSS (NM_009829)	65.0	NM_009829	12444.0	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	0.0	0.0	0.0	1.0	0.5	0.0
Merged-chr10-20916607-4	chr10	20916107	20917107	+	836.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35940.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	1.0	2.0	4.5	1.0	0.0	2.0
Merged-chr4-152136738-4	chr4	152136252	152137252	+	836.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207691)	promoter-TSS (NM_207691)	-427.0	NM_207690	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-53669945-4	chr9	53669401	53670401	+	836.270813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	-2394.0	NM_027807	75717.0	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr19-12476004-2	chr19	12475491	12476491	+	836.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172442, intron 7 of 8)	intron (NM_172442, intron 7 of 8)	15212.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	69.0	152.5	137.5	17.5	32.0	28.0
Merged-chr1-180408064-2	chr1	180407564	180408564	+	836.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	75440.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107559196-2	chr3	107558696	107559696	+	836.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4123.0	NM_026261	67591.0	Mm.55982	NM_026261	ENSMUSG00000055891	Ubl4b	4930522D07Rik	ubiquitin-like 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-12968382-3	chr10	12967841	12968841	+	836.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-4082.0	NM_001163591	74732.0	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-47438174-4	chr4	47437649	47438649	+	836.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36218.0	NM_001355496	56737.0	Mm.22218	NM_019998	ENSMUSG00000039740	Alg2	1110018A23Rik|1300013N08Rik|ALPG2|CDGIi|MNCb-5081	asparagine-linked glycosylation 2 (alpha-1,3-mannosyltransferase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116207182-2	chr6	116206682	116207682	+	836.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026585)	promoter-TSS (NM_026585)	811.0	NR_131013	78739.0	Mm.417032	NR_131013	ENSMUSG00000108030	9530062K07Rik	-	RIKEN cDNA 9530062K07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90538731-4	chr2	90538210	90539210	+	836.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	41937.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	27.0	10.5	28.0	18.0	66.0	23.5
Merged-chr4-48048110-4	chr4	48047582	48048582	+	836.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015743, intron 1 of 7)	intron (NM_015743, intron 1 of 7)	2777.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69033885-5	chr11	69033404	69034404	+	836.233337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281465, intron 17 of 22)	intron (NM_001281465, intron 17 of 22)	-11733.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-42933844-3	chr4	42933345	42934345	+	836.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001346526, exon 3 of 9)	exon (NM_001346526, exon 3 of 9)	-16022.0	NM_001355438	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55921433-3	chr19	55920840	55921840	+	836.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142920, intron 11 of 11)	intron (NM_001142920, intron 11 of 11)	26019.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-94900953-3	chr4	94900485	94901485	+	836.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27858.0	NM_027089	67753.0	Mm.25097	NM_027089	ENSMUSG00000028575	Eqtn	1700028B15Rik|4930579C15Rik|Afaf|C81058|Eqtl|Eqts	equatorin, sperm acrosome associated	protein-coding	3.5	6.0	6.5	2.0	11.0	15.0
Merged-chr2-124616031-13	chr2	124615307	124616307	+	836.211548	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	5511.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134801964-4	chr1	134801449	134802449	+	836.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081307, intron 18 of 23)	intron (NM_001081307, intron 18 of 23)	1772.0	NR_015606	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134494122-4	chr1	134493596	134494596	+	836.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145510)	promoter-TSS (NM_145510)	-564.0	NM_145510	98710.0	Mm.198119	NM_145510	ENSMUSG00000042229	Rabif	AI842864|AW549708|E130318E12Rik|MSS4|RASGFR3	RAB interacting factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88953274-3	chr5	88952850	88953850	+	836.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359211, intron 2 of 26)	intron (NM_001359211, intron 2 of 26)	66090.0	NM_018760	54403.0	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	18.0	29.0	35.5	12.5	4.0	9.0
Merged-chr7-30587859-2	chr7	30587359	30588359	+	836.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_029274, intron 1 of 36)	intron (NM_029274, intron 1 of 36)	867.0	NM_001290573	75410.0	Mm.168688	NM_029274	ENSMUSG00000006307	Kmt2b	2610014H22Rik|Mll2|Wbp7|mKIAA0304	lysine (K)-specific methyltransferase 2B	protein-coding	5.0	12.5	20.0	6.5	12.0	18.5
Merged-chr19-53547762-3	chr19	53547275	53548275	+	836.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18457.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97083897-2	chr11	97083397	97084397	+	836.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20129.0	NR_106181	102465893.0		NR_106181	ENSMUSG00000098769	Mir8103	Gm27841|mmu-mir-8103	microRNA 8103	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-14650934-3	chr19	14650435	14651435	+	836.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie1b|DNA|hAT-Charlie	-52752.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36670495-2	chr16	36669995	36670995	+	836.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-4418.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139386028-2	chr5	139385528	139386528	+	836.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	-3876.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-164652441-4	chr1	164651939	164652939	+	836.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-144224.0	NM_019759	56429.0	Mm.28935	NM_019759	ENSMUSG00000026574	Dpt	1810032B19Rik|5033416F05Rik|EQ-1|Eq1	dermatopontin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-67168493-4	chr6	67168020	67169020	+	836.145874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR42|LTR|ERVK	-98459.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-47152557-4	chr13	47152063	47153063	+	836.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 1 of 7)	intron (NM_146042, intron 1 of 7)	-3893.0	NR_126083	319467.0	Mm.447279	NR_126083	ENSMUSG00000114961	A930002C04Rik	-	RIKEN cDNA A930002C04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73494452-2	chr15	73493952	73494952	+	836.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-18108.0	NR_152151	105841.0	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52958634-4	chr2	52958124	52959124	+	836.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	100756.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-15923632-6	chr19	15923131	15924131	+	836.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177420, intron 1 of 8)	MTC|LTR|ERVL-MaLR	991.0	NM_001205339	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	2.5	4.0	6.5	2.5	3.0	11.0
Merged-chr11-19823687-3	chr11	19823149	19824149	+	836.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100793.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	2.0	11.0	0.5	0.0	14.0	0.5
Merged-chr19-55659597-2	chr19	55659097	55660097	+	836.099976	f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	42607.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157430075-3	chr2	157429555	157430555	+	836.0888669999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 1 of 13)	B1F1|SINE|Alu	5762.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0.0	2.5	2.0	1.0	0.5	13.5
Merged-chr18-38253124-4	chr18	38252635	38253635	+	836.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024179, intron 4 of 12)	intron (NM_024179, intron 4 of 12)	-2570.0	NR_027904	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	12.0	28.5	4.0	4.0	30.5	14.5
Merged-chr17-81424566-4	chr17	81424071	81425071	+	836.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 7 of 8)	intron (NR_104580, intron 7 of 8)	313816.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59230472-2	chr10	59229972	59230972	+	836.083313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8550.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84401335-4	chr10	84400829	84401829	+	836.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 2 of 6)	intron (NM_001004363, intron 2 of 6)	39142.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-3149661-4	chr17	3149180	3150180	+	836.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134123, intron 3 of 19)	MTC|LTR|ERVL-MaLR	34708.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30624092-4	chr2	30623601	30624601	+	836.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29057.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38025123-4	chr18	38024642	38025642	+	836.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26173.0	NM_001205336	106952.0	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-84587730-4	chr6	84587199	84588199	+	836.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177713, intron 2 of 6)	CpG	6111.0	NM_175475	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45037067-3	chr19	45036573	45037573	+	836.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001195265, exon 7 of 16)	exon (NM_001195265, exon 7 of 16)	8699.0	NM_001195265	100503041.0	Mm.329877	NM_177605	ENSMUSG00000074818	Pdzd7	9130207N01|EG435601|Pdzk7	PDZ domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92225486-4	chr1	92225002	92226002	+	836.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45161.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0.0	0.0	0.0	8.0	0.0	1.0
Merged-chr10-50894602-4	chr10	50894043	50895043	+	836.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1108.0	NM_011376	20464.0	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded family bHLH transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-167000782-6	chr1	167000249	167001249	+	836.027771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175461)	promoter-TSS (NM_175461)	-668.0	NM_175461	226610.0	Mm.389217	NM_175461	ENSMUSG00000060568	Fam78b	C030014K22Rik|C030020L09Rik	family with sequence similarity 78, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56546186-2	chr19	56545686	56546686	+	836.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153440, intron 2 of 9)	intron (NR_153440, intron 2 of 9)	1936.0	NM_001360437	55947.0	Mm.2805	NM_018831	ENSMUSG00000025077	Dclre1a	2810043H12Rik|AU022226|Pso2|Smn1a|Snm1|mKIAA0086	DNA cross-link repair 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-34840849-2	chr12	34840349	34841349	+	836.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 2 of 27)	intron (NM_001271386, intron 2 of 27)	76246.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	6.5	7.0	8.0	1.5	3.0	8.0
Merged-chr17-34906635-2	chr17	34906135	34907135	+	836.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286575, intron 13 of 27)	intron (NM_001286575, intron 13 of 27)	7661.0	NM_145830	110147.0	Mm.35345	NM_145830	ENSMUSG00000013787	Ehmt2	Bat8|D17Ertd710e|G9a|KMT1C|NG36	euchromatic histone lysine N-methyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70691578-1	chr8	70691078	70692078	+	836.0	f1_c57bl6.idr	Intergenic	Intergenic	-6161.0	NM_010592	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	3.0	0.0	5.0	4.5	2.5	0.5
Merged-chr12-85517752-2	chr12	85517252	85518252	+	836.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43862.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34387927-2	chr7	34387427	34388427	+	836.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025948, intron 1 of 10)	PB1D9|SINE|Alu	1778.0	NM_001360654	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-130009241-3	chr7	130008747	130009747	+	836.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47082.0	NR_046077	100043150.0	Mm.334264	NR_046077	ENSMUSG00000108504	Gm4265	-	predicted gene 4265	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30391389-2	chr16	30390889	30391889	+	836.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2859.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	0.5	6.0	5.5	0.5	0.5	6.0
Merged-chr17-33931717-4	chr17	33931201	33932201	+	836.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009059, intron 2 of 17)	intron (NM_009059, intron 2 of 17)	1807.0	NM_009059	19732.0	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	37.5	58.5	37.0	22.0	49.5	39.0
Merged-chr14-43873812-2	chr14	43873312	43874312	+	836.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49556.0	NM_053112	93725.0	Mm.429087	NM_053112	ENSMUSG00000090166	Ear10	Raf2	eosinophil-associated, ribonuclease A family, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-66041338-4	chr18	66040832	66041832	+	836.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38697.0	NM_001172062	70361.0	Mm.290857	NM_027400	ENSMUSG00000041891	Lman1	2610020P13Rik|AI326273|AU043785|C730041J05|ERGIC53|F5F8D|MCFD1|MR60|P58|gp58	lectin, mannose-binding, 1	protein-coding	8.5	1.0	2.0	0.0	1.0	0.0
Merged-chr17-63168281-2	chr17	63167781	63168781	+	836.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 7 of 8)	intron (NM_015794, intron 7 of 8)	144692.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88626728-2	chr3	88626228	88627228	+	836.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 1 of 21)	intron (NM_001198913, intron 1 of 21)	5334.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38742940-2	chr16	38742440	38743440	+	836.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285793, intron 1 of 6)	intron (NM_001285793, intron 1 of 6)	681.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105678379-2	chr5	105677879	105678879	+	836.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-21590.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.0	6.5	0.5	3.5	8.5	2.5
Merged-chr2-128752256-2	chr2	128751756	128752756	+	836.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 6 of 18)	intron (NM_008587, intron 6 of 18)	53341.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	8.5	15.0	20.0	5.5	14.5	11.0
Merged-chr10-40143800-2	chr10	40143300	40144300	+	836.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-1546.0	NM_001114332	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6446320-2	chr15	6445820	6446820	+	836.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013485, intron 1 of 10)	MLT1A1|LTR|ERVL-MaLR	987.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70789862-2	chr8	70789326	70790326	+	836.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199308, intron 3 of 25)	intron (NM_199308, intron 3 of 25)	2607.0	NM_199308	546071.0	Mm.250731	NM_199308	ENSMUSG00000031833	Mast3	BC024265|mKIAA0561	microtubule associated serine/threonine kinase 3	protein-coding	0.0	0.0	7.5	0.0	12.5	1.5
Merged-chr11-115481616-2	chr11	115481116	115482116	+	836.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177778, intron 2 of 2)	RCHARR1|DNA|hAT-Charlie	5949.0	NM_001361594	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46308475-2	chr19	46307975	46308975	+	836.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001177369, exon 11 of 23)	exon (NM_001177369, exon 11 of 23)	2545.0	NM_001177370	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.0	4.0	3.0	3.0	0.0	2.0
Merged-chr6-85117968-3	chr6	85117437	85118437	+	836.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034902, intron 2 of 2)	intron (NM_001034902, intron 2 of 2)	8157.0	NM_001034902	545861.0	Mm.321419	NM_001034902	ENSMUSG00000072952	Gm5878	EG545861	predicted gene 5878	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106411370-3	chr9	106410885	106411885	+	836.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18026.0	NM_001324533	19944.0	Mm.288696	NM_009082	ENSMUSG00000048758	Rpl29	Rpl43	ribosomal protein L29	protein-coding	0.0	0.0	1.5	2.0	6.0	9.5
Merged-chr18-90583113-2	chr18	90582613	90583613	+	836.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362365, intron 1 of 3)	Lx5c|LINE|L1	3288.0	NM_001362365	108168395.0	Mm.391131	NM_001362365	ENSMUSG00000110277	Gm45871	-	predicted gene 45871	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101383533-1	chr7	101383033	101384033	+	836.0	f0_balb.idr	intron (NM_001040112, intron 1 of 30)	intron (NM_001040112, intron 1 of 30)	-1993.0	NM_027180	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.5	32.5	12.0	3.0	5.0	7.5
Merged-chr4-150278007-1	chr4	150277507	150278507	+	836.0	f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-3909.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	16.0	20.0	28.0	8.0	2.5	5.0
Merged-chr13-20508710-2	chr13	20508201	20509201	+	836.0	f0_balb.idr|f1_balb.idr	intron (NM_198093, intron 1 of 6)	intron (NM_198093, intron 1 of 6)	35711.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	2.0	9.0	4.0	5.0	20.0	8.5
Merged-chr2-91947009-2	chr2	91946518	91947518	+	836.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166597, intron 1 of 31)	intron (NM_001166597, intron 1 of 31)	-2088.0	NR_105965	102465604.0		NR_105965	ENSMUSG00000098651	Mir6999	Gm27673|mmu-mir-6999	microRNA 6999	ncRNA	5.0	7.0	0.5	4.0	3.5	3.5
Merged-chr7-36713145-2	chr7	36712645	36713645	+	836.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172298, intron 1 of 1)	intron (NM_172298, intron 1 of 1)	15027.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	0.0	5.0	8.5	0.0	0.0	1.0
Merged-chr15-36323918-4	chr15	36323395	36324395	+	835.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40748.0	NM_001357631	30945.0	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	0.0	2.0	0.5	0.0	2.0	0.0
Merged-chr6-134862990-4	chr6	134862476	134863476	+	835.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	24809.0	NR_074084	14760.0	Mm.4787	NM_008157	ENSMUSG00000032641	Gpr19	-	G protein-coupled receptor 19	protein-coding	1.5	0.0	6.5	0.0	3.0	8.0
Merged-chr11-105311769-3	chr11	105311260	105312260	+	835.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008626, intron 1 of 29)	intron (NM_008626, intron 1 of 29)	19114.0	NM_008626	17534.0	Mm.235616	NM_008626	ENSMUSG00000020695	Mrc2	Endo180|mKIAA0709|uPARAP	mannose receptor, C type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34034113-3	chr10	34033615	34034615	+	835.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3482.0	NM_001162937	692132.0	Mm.383415	NM_001162937	ENSMUSG00000071340	Trappc3l	Bet3l	trafficking protein particle complex 3 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102181963-3	chr12	102181410	102182410	+	835.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172152, intron 2 of 16)	intron (NM_172152, intron 2 of 16)	53183.0	NM_172152	238384.0	Mm.312448	NM_172152	ENSMUSG00000041771	Slc24a4	A930002M03Rik|AW492432|NCKX4	solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-3008568-3	chr18	3007999	3008999	+	835.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	114913.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117718462-2	chr10	117717962	117718962	+	835.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7704.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-113729161-4	chr9	113728650	113729650	+	835.891663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12323.0	NM_001286599	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0.0	3.5	1.5	0.0	0.0	0.0
Merged-chr15-81011369-6	chr15	81010745	81011745	+	835.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_134091, exon 20 of 22)	exon (NM_134091, exon 20 of 22)	33480.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-12469798-3	chr16	12469294	12470294	+	835.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-341596.0	NR_040507	75493.0	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21556557-3	chr10	21556059	21557059	+	835.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36586.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	1.0	4.0	1.5	1.0	4.0	1.5
Merged-chr11-119404881-2	chr11	119404381	119405381	+	835.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	14409.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.0	0.0	4.5	0.0	0.0	2.0
Merged-chr17-31996435-2	chr17	31995935	31996935	+	835.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028902, intron 6 of 7)	intron (NM_028902, intron 6 of 7)	38073.0	NM_028902	74377.0	Mm.75856	NM_028902	ENSMUSG00000002076	Hsf2bp	4932437G14Rik	heat shock transcription factor 2 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54967676-2	chr6	54967176	54968176	+	835.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172729, intron 1 of 11)	intron (NM_172729, intron 1 of 11)	3985.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40575194-3	chr12	40574701	40575701	+	835.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	L1MB2|LINE|L1	129148.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-43540308-4	chr16	43539824	43540824	+	835.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 3 of 6)	intron (NM_181058, intron 3 of 6)	-100331.0	NR_030576	100124467.0		NR_030576	ENSMUSG00000076372	Mir568	Mirn568|mmu-mir-568	microRNA 568	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-60804208-3	chr1	60803646	60804646	+	835.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	57758.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	9.0	17.5	27.5	14.0	12.0	17.5
Merged-chr2-163764014-3	chr2	163763506	163764506	+	835.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13767.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	6.5	6.5	9.0	48.0	97.5	86.5
Merged-chr12-110682961-3	chr12	110682433	110683433	+	835.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025488)	promoter-TSS (NM_025488)	-314.0	NM_025488	66323.0	Mm.273316	NM_025488	ENSMUSG00000056508	1700001K19Rik	-	RIKEN cDNA 1700001K19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73427658-5	chr2	73427216	73428216	+	835.773315	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26173.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78191924-4	chr9	78191431	78192431	+	835.770813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010357)	promoter-TSS (NM_010357)	-35.0	NM_010357	14860.0	Mm.2662	NM_010357	ENSMUSG00000032348	Gsta4	GST5.7|mGsta4	glutathione S-transferase, alpha 4	protein-coding	2.0	16.5	14.0	3.5	11.0	8.0
Merged-chr12-81658243-4	chr12	81657745	81658745	+	835.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033149, intron 1 of 2)	intron (NM_001033149, intron 1 of 2)	26996.0	NM_001033149	69480.0	Mm.130002	NM_001033149	ENSMUSG00000042734	Ttc9	-	tetratricopeptide repeat domain 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74712214-4	chr1	74711728	74712728	+	835.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1307.0	NM_024264	104086.0	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58126362-4	chr13	58125847	58126847	+	835.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029872, exon 1 of 1)	3' UTR (NM_029872, exon 1 of 1)	2209.0	NM_029872	77134.0	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	6.0	23.5	19.5	2.5	3.0	20.0
Merged-chr15-37787611-4	chr15	37787081	37788081	+	835.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359844, intron 1 of 7)	ORR1E|LTR|ERVL-MaLR	4419.0	NM_001170866	52589.0	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47616580-3	chr9	47616086	47617086	+	835.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	86234.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0.0	6.0	7.0	8.0	2.0	6.0
Merged-chr19-46526267-2	chr19	46525723	46526723	+	835.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24575.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	4.5	2.0	6.5	0.0	8.0	2.5
Merged-chr4-142090270-2	chr4	142089774	142090774	+	835.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5970.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	4.5	25.0	10.5	0.0	9.0	7.5
Merged-chr16-10970800-4	chr16	10970306	10971306	+	835.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	22315.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152560977-4	chr1	152560478	152561478	+	835.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 4 of 17)	intron (NM_016846, intron 4 of 17)	64239.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191131910-4	chr1	191131413	191132413	+	835.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32904.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103421462-4	chr14	103420971	103421971	+	835.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74671.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104099519-4	chr8	104099032	104100032	+	835.741638	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131138, intron 1 of 2)	intron (NR_131138, intron 1 of 2)	-2093.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153953964-4	chr1	153953475	153954475	+	835.729187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	54046.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-85971140-5	chr3	85970649	85971649	+	835.723816	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	31342.0	NM_001001650	368202.0	Mm.253822	NM_001001650	ENSMUSG00000049013	Prss48	Esspl|Gm1019	protease, serine 48	protein-coding	0.0	0.0	4.5	0.0	2.5	0.0
Merged-chr2-60963085-3	chr2	60962584	60963584	+	835.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_020296, exon 1 of 14)	5' UTR (NM_020296, exon 1 of 14)	120.0	NM_020296	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-45498377-3	chr5	45497866	45498866	+	835.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024434, intron 4 of 12)	intron (NM_024434, intron 4 of 12)	4992.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-46961494-4	chr6	46961013	46962013	+	835.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004357, intron 15 of 23)	intron (NM_001004357, intron 15 of 23)	-282883.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	3.5	0.0	2.0	0.0	0.0	3.0
Merged-chr17-57332485-4	chr17	57331990	57332990	+	835.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-26196.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-42915165-5	chr17	42914570	42915570	+	835.700012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-38646.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	1.5	32.5	18.5	0.5	14.5	3.0
Merged-chr10-20125461-2	chr10	20124961	20125961	+	835.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 24 of 29)	intron (NM_008580, intron 24 of 29)	-23459.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	4.5	17.5	14.0	0.5	18.0	8.0
Merged-chr7-116370542-3	chr7	116370042	116371042	+	835.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011083, intron 13 of 32)	intron (NM_011083, intron 13 of 32)	-36352.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68058131-1	chr10	68057631	68058631	+	835.666687	f0_balb.idr	Intergenic	Charlie1|DNA|hAT-Charlie	78561.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	1.0	4.0	6.5	0.0	4.0	1.5
Merged-chr6-135249901-4	chr6	135249340	135250340	+	835.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080553, intron 1 of 5)	intron (NM_001080553, intron 1 of 5)	-1956.0	NM_001080552	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	0.0	2.0	0.0	7.0	12.0	0.5
Merged-chr14-20576322-3	chr14	20575827	20576827	+	835.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030180, intron 13 of 20)	intron (NM_030180, intron 13 of 20)	-29754.0	NM_008914	19056.0	Mm.274432	NM_008914	ENSMUSG00000021816	Ppp3cb	1110063J16Rik|Calnb|CnAbeta|Cnab	protein phosphatase 3, catalytic subunit, beta isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-5807102-3	chr10	5806617	5807617	+	835.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1652.0	NM_025995	67141.0	Mm.197520	NM_025995	ENSMUSG00000019773	Fbxo5	2510044I10Rik|C85305|Emi1|Fbxo31	F-box protein 5	protein-coding	33.0	69.0	41.5	23.5	61.0	45.0
Merged-chr2-144369586-3	chr2	144369047	144370047	+	835.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166640, intron 1 of 10)	intron (NM_001166640, intron 1 of 10)	512.0	NM_181417	228714.0	Mm.227925	NM_181417	ENSMUSG00000027425	Kat14	2510008M08Rik|ATAC2|AU023459|Csrp2bp|D2Ertd473e|D2Wsu131e|E430020F17	lysine acetyltransferase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72273975-3	chr8	72273504	72274504	+	835.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33986.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	1.5	1.0	2.0	3.0	24.0	1.5
Merged-chr5-105354230-3	chr5	105353706	105354706	+	835.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7730.0	NR_132129	634650.0	Mm.458435	NM_001039647	ENSMUSG00000092021	Gbp11	EG634650|Gm7141	guanylate binding protein 11	protein-coding	0.0	5.0	8.5	0.5	11.0	12.0
Merged-chr18-62093866-2	chr18	62093287	62094287	+	835.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	86194.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	6.5	10.0	5.5	14.0	9.5	3.5
Merged-chr17-63402394-4	chr17	63401879	63402879	+	835.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 4 of 8)	L1MDa|LINE|L1	-89406.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-129999343-2	chr5	129998838	129999838	+	835.650024	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357026)	TTS (NM_001357026)	3711.0	NM_010368	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	24.5	19.0	5.5	8.5	5.0	8.5
Merged-chr1-135375216-4	chr1	135374758	135375758	+	835.6357419999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175259)	promoter-TSS (NM_175259)	-195.0	NM_175259	77552.0	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71448757-4	chr17	71448266	71449266	+	835.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028887, exon 6 of 48)	exon (NM_028887, exon 6 of 48)	26577.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38451209-4	chr2	38450709	38451709	+	835.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60488.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39402749-4	chr10	39402233	39403233	+	835.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	MTC|LTR|ERVL-MaLR	32934.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34544333-4	chr5	34543839	34544839	+	835.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145858, intron 1 of 12)	intron (NM_001145858, intron 1 of 12)	974.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36724765-3	chr18	36724223	36725223	+	835.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009841)	TTS (NM_009841)	2092.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	5.5	1.5	1.5	2.0	15.5	7.0
Merged-chr9-107545797-3	chr9	107545299	107546299	+	835.611145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_018879)	TTS (NM_018879)	-1511.0	NM_053253	114602.0	Mm.28331	NM_053253	ENSMUSG00000010044	Zmynd10	Blu	zinc finger, MYND domain containing 10	protein-coding	1.5	6.0	6.0	0.0	6.0	4.5
Merged-chr1-144263531-3	chr1	144263032	144264032	+	835.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14428.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-116944450-5	chr8	116943903	116944903	+	835.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177700, intron 1 of 3)	intron (NM_177700, intron 1 of 3)	1010.0	NM_177700	234776.0	Mm.259736	NM_177700	ENSMUSG00000047388	Atmin	Asciz|gpg6|mKIAA0431	ATM interactor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46509247-3	chr19	46508698	46509698	+	835.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	7550.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88631725-4	chr5	88631214	88632214	+	835.608337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 9 of 13)	intron (NM_001359208, intron 9 of 13)	43866.0	NM_001098476	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-63766835-2	chr5	63766335	63767335	+	835.583313	f1_balb.idr|f1_c57bl6.idr	intron (NM_177006, intron 3 of 6)	intron (NM_177006, intron 3 of 6)	-45660.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-60912030-4	chr14	60911535	60912535	+	835.575012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125952.0	NM_001164155	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123142282-4	chr5	123141779	123142779	+	835.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040398)	promoter-TSS (NM_001040398)	86.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	19.0	62.5	27.0	18.5	61.0	27.0
Merged-chr4-116644481-3	chr4	116643955	116644955	+	835.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021473, intron 2 of 8)	B3A|SINE|B2	7219.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31093496-4	chr5	31093013	31094013	+	835.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011773)	promoter-TSS (NM_011773)	14.0	NM_011773	22784.0	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	0.0	1.0	0.0	0.0	1.0	2.0
Merged-chr10-122738117-3	chr10	122737645	122738645	+	835.533325	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	GA-rich|Low_complexity|Low_complexity	58830.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	2.5	1.5	2.0	8.5	11.5	2.0
Merged-chr3-27625407-1	chr3	27624907	27625907	+	835.5	f0_balb.idr	intron (NM_001356953, intron 3 of 26)	intron (NM_001356953, intron 3 of 26)	-40412.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103414172-2	chr11	103413672	103414672	+	835.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-1508.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-35068117-2	chr10	35067617	35068617	+	835.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	584717.0	NM_010237	14302.0	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-109671729-3	chr7	109671229	109672229	+	835.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32008.0	NM_020616	57373.0	Mm.334138	NM_020616	ENSMUSG00000031023	Akip1	BCA3|C11orf17|D7H11orf17|D930014E17Rik|ICRFP703B1614Q5.6|ORF27	A kinase (PRKA) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34965766-2	chr17	34965266	34966266	+	835.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6390.0	NM_010479	193740.0	Mm.6388	NM_010479	ENSMUSG00000091971	Hspa1a	Hsp70-3|Hsp70.3|Hsp72|hsp68|hsp70A1	heat shock protein 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45280353-2	chr4	45279853	45280853	+	835.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081172, intron 15 of 15)	intron (NM_001081172, intron 15 of 15)	-16815.0	NM_027266	69934.0	Mm.46761	NM_027266	ENSMUSG00000035601	Trmt10b	2610042J10Rik|Rg9mtd3|Rnmtd3	tRNA methyltransferase 10B	protein-coding	0.0	0.0	1.5	2.0	0.0	0.0
Merged-chr4-7313380-3	chr4	7312884	7313884	+	835.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-247304.0	NR_040645	71510.0	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136345212-2	chr1	136344712	136345712	+	835.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347109, intron 1 of 17)	intron (NM_001347109, intron 1 of 17)	892.0	NM_001347109	67886.0	Mm.144143	NM_001081360	ENSMUSG00000041570	Camsap2	1600013L13Rik|4930541M15Rik|Camsap1l1|mKIAA1078	calmodulin regulated spectrin-associated protein family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27620172-2	chr3	27619672	27620672	+	835.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 4 of 26)	MLT1E1A|LTR|ERVL-MaLR	-35177.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85831443-2	chr11	85830943	85831943	+	835.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_077059, intron 1 of 4)	intron (NR_077059, intron 1 of 4)	945.0	NR_077059	69909.0	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92022918-2	chr16	92022418	92023418	+	835.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA9|LINE|L1	-35404.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-35221347-2	chr4	35220847	35221847	+	835.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081343, intron 1 of 10)	RLTR11A|LTR|ERVK	4533.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38645743-2	chr15	38645243	38646243	+	835.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16161.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71366774-2	chr2	71366274	71367274	+	835.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 1 of 17)	intron (NM_172436, intron 1 of 17)	780.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-15940729-2	chr7	15940229	15941229	+	835.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133831, intron 5 of 12)	B1_Mur4|SINE|Alu	-1869.0	NR_028539	100217441.0		NR_028539	ENSMUSG00000080478	Snord23	MBII-115	small nucleolar RNA, C/D box 23	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113429809-2	chr13	113429309	113430309	+	835.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73035.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-109531035-2	chr12	109530535	109531535	+	835.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9961.0	NR_027652	17263.0	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-19698939-2	chr8	19698439	19699439	+	835.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30637.0	NM_001270553	100861668.0	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50513574-2	chr17	50513080	50514080	+	835.5	f0_balb.idr|f1_balb.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	4033.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	1.5	21.0	14.0	14.0	19.5	9.0
Merged-chr11-70414071-2	chr11	70413571	70414571	+	835.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4040.0	NM_029231	75273.0	Mm.340601	NM_029231	ENSMUSG00000018921	Pelp1	4930563C04Rik|MNAR	proline, glutamic acid and leucine rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75831547-2	chr10	75831047	75832047	+	835.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010361)	TTS (NM_010361)	3334.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105261484-2	chr4	105260984	105261984	+	835.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	104137.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.0	0.0	0.0	6.5	2.5	2.0
Merged-chr10-44322152-2	chr10	44321652	44322652	+	835.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001314013, intron 5 of 6)	intron (NM_001314013, intron 5 of 6)	-37524.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-97196984-3	chr13	97196451	97197451	+	835.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010422, intron 1 of 13)	intron (NM_010422, intron 1 of 13)	1406.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61493281-2	chr11	61492781	61493781	+	835.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291037, intron 1 of 5)	MIRb|SINE|MIR	980.0	NM_001361989	23939.0	Mm.38172	NM_011841	ENSMUSG00000001034	Mapk7	BMK-1|BMK1|ERK-5|ERK5|Erk5-T|PRKM7|b2b2346Clo	mitogen-activated protein kinase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-94811439-2	chr3	94810939	94811939	+	835.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-24924.0	NM_001037711	70737.0	Mm.87634	NM_001037711	ENSMUSG00000068876	Cgn	6330408J11Rik	cingulin	protein-coding	4.5	1.5	2.0	6.5	5.0	4.5
Merged-chr16-3839625-2	chr16	3839125	3840125	+	835.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008762, exon 1 of 1)	exon (NM_008762, exon 1 of 1)	650.0	NM_008762	18312.0	Mm.377102	NM_008762	ENSMUSG00000059043	Olfr15	MOR256-17|OR3	olfactory receptor 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51478221-2	chr10	51477721	51478721	+	835.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2391.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-142735452-2	chr2	142734952	142735952	+	835.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 17 of 26)	intron (NM_001355123, intron 17 of 26)	166012.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124481721-4	chr6	124481207	124482207	+	835.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11406.0	NM_181344	232371.0	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21782737-7	chr13	21782267	21783267	+	835.428589	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178207)	TTS (NM_178207)	630.0	NM_178207	319153.0	Mm.390558	NM_178207	ENSMUSG00000101972	Hist1h3i	H3-H	histone cluster 1, H3i	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73629602-5	chr15	73629083	73630083	+	835.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4839.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-126624131-8	chr3	126623474	126624474	+	835.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	27023.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	38.0	186.0	100.0	68.0	137.0	113.0
Merged-chr17-5574082-2	chr17	5573582	5574582	+	835.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	(TTTTG)n|Simple_repeat|Simple_repeat	81482.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8957861-4	chr3	8957366	8958366	+	835.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	6280.0	NM_001025262	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-93013174-4	chr13	93012676	93013676	+	835.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60128.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	2.0	6.0	0.0	0.0	6.5	2.0
Merged-chr10-17043172-4	chr10	17042687	17043687	+	835.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038020, intron 1 of 8)	intron (NR_038020, intron 1 of 8)	52595.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-3742583-6	chr13	3742107	3743107	+	835.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	61711.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	0.0	0.0	1.0	5.0	8.0	1.0
Merged-chr9-106685106-4	chr9	106684552	106685552	+	835.349976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104459, intron 1 of 4)	intron (NR_104459, intron 1 of 4)	764.0	NM_011573	21767.0	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	41.0	82.0	77.5	15.5	99.0	81.5
Merged-chr6-17589426-2	chr6	17588915	17589915	+	835.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47595.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	5.5	10.0	5.0	9.0	6.5	5.0
Merged-chr4-9635361-2	chr4	9634856	9635856	+	835.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177856, intron 4 of 4)	Lx2B2|LINE|L1	8361.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0.0	8.5	1.5	0.0	7.0	4.5
Merged-chr3-100923164-2	chr3	100922664	100923664	+	835.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001165953, exon 1 of 7)	exon (NM_001165953, exon 1 of 7)	671.0	NM_001165953	229644.0	Mm.189351	NM_194343	ENSMUSG00000033233	Trim45	4921530N01Rik	tripartite motif-containing 45	protein-coding	4.5	14.5	14.0	6.5	30.5	4.5
Merged-chr6-134106014-4	chr6	134105527	134106527	+	835.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	70327.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.0	0.0	1.5	0.0	0.0	0.5
Merged-chr1-170365890-4	chr1	170365434	170366434	+	835.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 4 of 9)	MTD|LTR|ERVL-MaLR	57073.0	NM_001039593	76925.0	Mm.33631	NM_001039593	ENSMUSG00000042800	Spata46	1700015E13Rik	spermatogenesis associated 46	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152152619-4	chr1	152152105	152153105	+	835.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62285.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63087858-2	chr14	63087358	63088358	+	835.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32785.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83107775-4	chr6	83107275	83108275	+	835.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081266, exon 8 of 9)	exon (NM_001081266, exon 8 of 9)	-1333.0	NM_026744	68499.0	Mm.333183	NM_026744	ENSMUSG00000030037	Mrpl53	1110007K17Rik	mitochondrial ribosomal protein L53	protein-coding	0.5	8.5	1.0	0.0	0.5	6.0
Merged-chr5-101768098-4	chr5	101767537	101768537	+	835.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173370, intron 1 of 12)	intron (NM_173370, intron 1 of 12)	2907.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	5.5	10.5	2.0	7.0	13.0	5.0
Merged-chr9-66680314-3	chr9	66679835	66680835	+	835.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33351.0	NM_178396	76459.0	Mm.277921	NM_178396	ENSMUSG00000032373	Car12	2310047E01Rik|AI314958|CA-XII|Ca12	carbonic anhydrase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96730029-3	chr3	96729532	96730532	+	835.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026406, intron 1 of 8)	intron (NM_026406, intron 1 of 8)	2421.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-140903417-3	chr7	140902917	140903917	+	835.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2647.0	NR_015583	212965.0	Mm.387212	NR_015583	ENSMUSG00000109628	BC024386	BC039766	cDNA sequence BC023486	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94611605-4	chr11	94611118	94612118	+	835.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9832.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	10.5	9.0	20.5	14.0	4.5	18.0
Merged-chr11-115158649-2	chr11	115158149	115159149	+	835.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_021411, intron 4 of 8)	intron (NM_021411, intron 4 of 8)	4471.0	NM_021411	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34463889-2	chr1	34463437	34464437	+	835.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011206, intron 5 of 14)	intron (NM_011206, intron 5 of 14)	4191.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155197863-4	chr4	155197363	155198363	+	835.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	24672.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	1.5	3.0	1.5	0.0	1.0	0.5
Merged-chr5-36728174-2	chr5	36727674	36728674	+	835.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20505.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-73169549-2	chr11	73169049	73170049	+	835.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_033321, intron 10 of 12)	intron (NM_033321, intron 10 of 12)	7459.0	NM_001168470	66048.0	Mm.73608	NM_025318	ENSMUSG00000047260	Emc6	0610009E20Rik|0610025L18Rik|Tmem93	ER membrane protein complex subunit 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4565815-2	chr2	4565315	4566315	+	835.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 1 of 11)	intron (NM_001177844, intron 1 of 11)	6061.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70007997-1	chr9	70007497	70008497	+	835.25	f0_balb.idr	3' UTR (NM_016787, exon 11 of 11)	3' UTR (NM_016787, exon 11 of 11)	-4551.0	NM_001282084	235459.0	Mm.293117	NM_199151	ENSMUSG00000033543	Gtf2a2	TFIIA-gamma|TfIIg|Tfiia2	general transcription factor II A, 2	protein-coding	2.0	9.5	9.0	10.0	14.5	4.5
Merged-chr6-24666438-3	chr6	24665920	24666920	+	835.233337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1425.0	NM_028459	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153443874-3	chr1	153443371	153444371	+	835.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033162, intron 6 of 9)	B4A|SINE|B4	18662.0	NM_001033162	71836.0	Mm.49460	NM_001033162	ENSMUSG00000042708	Shcbp1l	1700012A16Rik	Shc SH2-domain binding protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4329177-3	chr8	4328675	4329675	+	835.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033527, intron 2 of 5)	intron (NR_033527, intron 2 of 5)	3965.0	NR_033527	20300.0	Mm.7275	NM_009138	ENSMUSG00000023235	Ccl25	A130072A22Rik|AI852536|CKb15|Scya25|TECK	chemokine (C-C motif) ligand 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65587325-3	chr18	65586707	65587707	+	835.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361051, intron 1 of 8)	intron (NM_001361051, intron 1 of 8)	4006.0	NM_001361051	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	0.0	9.0	2.0	0.0	1.5	0.5
Merged-chr10-75289607-3	chr10	75289107	75290107	+	835.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153406, intron 13 of 15)	intron (NM_153406, intron 13 of 15)	-27270.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24713746-4	chr13	24713248	24714248	+	835.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029679, exon 17 of 23)	exon (NM_029679, exon 17 of 23)	48189.0	NM_020567	57441.0	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121971839-3	chr8	121971340	121972340	+	835.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016812, intron 1 of 13)	intron (NM_016812, intron 1 of 13)	-6184.0	NR_106096	102466915.0		NR_106096	ENSMUSG00000099140	Mir7237	Gm27482|mmu-mir-7237	microRNA 7237	ncRNA	7.5	2.0	4.0	6.0	0.0	4.5
Merged-chr18-46473933-5	chr18	46473464	46474464	+	835.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	U6|snRNA|snRNA	-8148.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4053785-2	chr11	4053285	4054285	+	835.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11068.0	NM_001029937	380683.0	Mm.296806	NM_001029937	ENSMUSG00000054986	Sec14l3	1110069O07Rik	SEC14-like lipid binding 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90575822-4	chr2	90575298	90576298	+	835.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	4849.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170613424-4	chr1	170612925	170613925	+	835.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23576.0	NM_001109985	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-46927029-4	chr13	46926509	46927509	+	835.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010617, intron 2 of 37)	intron (NM_010617, intron 2 of 37)	2709.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	3.5	15.5	7.0	7.0	12.0	3.5
Merged-chr17-27585134-3	chr17	27584702	27585702	+	835.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291046, intron 2 of 4)	RLTR20A2B_MM|LTR|ERVK	-19475.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	11.0	9.5	19.0	3.0	4.5	2.0
Merged-chr11-48855001-2	chr11	48854501	48855501	+	835.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	16419.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60584744-2	chr18	60584287	60585287	+	835.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133363, intron 2 of 6)	intron (NM_133363, intron 2 of 6)	6929.0	NM_133363	170947.0	Mm.159257	NM_133363	ENSMUSG00000049173	Myoz3	4833419K08Rik|Fatz-3	myozenin 3	protein-coding	2.0	2.5	1.5	1.0	0.0	0.0
Merged-chr1-130549906-2	chr1	130549406	130550406	+	835.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	79700.0	NM_009581	22789.0	Mm.4644	NM_009581	ENSMUSG00000042554	Zp3r	AV264399|SP56	zona pellucida 3 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117655534-3	chr11	117655016	117656016	+	835.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 1 of 21)	CpG	1227.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184174632-4	chr1	184174134	184175134	+	835.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	140253.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-119772968-4	chr3	119772477	119773477	+	835.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310711, intron 2 of 13)	intron (NM_001310711, intron 2 of 13)	10411.0	NM_001310711	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	0.0	0.0	2.0	0.0	0.0	1.5
Merged-chr1-87098820-4	chr1	87098360	87099360	+	835.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081082, exon 11 of 11)	exon (NM_001081082, exon 11 of 11)	2746.0	NM_001081082	76768.0	Mm.58068	NM_001081082	ENSMUSG00000079440	Alpi	2010001C14Rik|Akp6|gIAP	alkaline phosphatase, intestinal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5640978-2	chr17	5640478	5641478	+	835.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	ORR1B1|LTR|ERVL-MaLR	148378.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75830535-4	chr2	75830030	75831030	+	835.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1647.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-36172452-3	chr8	36171959	36172959	+	835.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16449.0	NR_151736	330738.0	Mm.128075	NR_151736	ENSMUSG00000109704	Gm38414	A230084N10|Gm45568	predicted gene, 38414	ncRNA	4.5	0.0	4.5	21.5	18.5	10.0
Merged-chr6-92943162-3	chr6	92942668	92943668	+	835.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015530, intron 1 of 2)	CpG	2586.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191122034-3	chr1	191121485	191122485	+	835.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	23571.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	9.5	29.0	20.5	31.0	41.0	43.0
Merged-chr6-93962533-3	chr6	93962013	93963013	+	835.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029850, intron 1 of 23)	intron (NM_001029850, intron 1 of 23)	-48823.0	NM_001083320	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81155547-3	chr13	81155055	81156055	+	835.0888669999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 86 of 89)	intron (NM_054053, intron 86 of 89)	191481.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20977563-2	chr9	20977063	20978063	+	835.083313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010333)	promoter-TSS (NM_010333)	-770.0	NM_010333	14739.0	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136056192-4	chr4	136055685	136056685	+	835.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4-int|LTR|ERVK	-2814.0	NM_025919	67025.0	Mm.276856	NM_025919	ENSMUSG00000059291	Rpl11	2010203J19Rik	ribosomal protein L11	protein-coding	1.5	5.5	3.5	1.5	9.5	2.0
Merged-chr12-116595939-4	chr12	116595439	116596439	+	835.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011215, intron 2 of 22)	MTD-int|LTR|ERVL-MaLR	110219.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	3.0	0.0	7.0	0.0	0.0	0.0
Merged-chr1-92834301-3	chr1	92833855	92834855	+	835.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016696, intron 1 of 8)	intron (NM_016696, intron 1 of 8)	2710.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33897288-4	chr17	33896811	33897811	+	835.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-6678.0	NM_001195298	100502766.0	Mm.335713	NM_001195298	ENSMUSG00000079553	Kifc1	100042970|Gm4137|HSET|KNSL2|Kifc5a|Knsl2a|Tctex-7|Tctex-7A|Tctex7|Tctex7a	kinesin family member C1	protein-coding	1.5	4.0	6.5	0.0	7.5	3.0
Merged-chr6-97853659-3	chr6	97853146	97854146	+	835.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	46588.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0.0	1.5	3.0	0.0	3.0	5.0
Merged-chr6-66357240-3	chr6	66356746	66357746	+	835.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84741.0	NR_136927	102633773.0	Mm.272086	NR_136927	ENSMUSG00000107653	Gm31520	-	sterol-C5-desaturase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88140974-5	chr3	88140472	88141472	+	835.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1400.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98890484-4	chr13	98889960	98890960	+	835.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 2 of 23)	intron (NM_178716, intron 2 of 23)	582.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119252781-2	chr11	119252281	119253281	+	835.035706	f1_balb.idr|f1_c57bl6.idr	intron (NM_175430, intron 13 of 18)	intron (NM_175430, intron 13 of 18)	-15182.0	NM_001159324	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	1.0	0.0	1.0	1.5	0.0	0.0
Merged-chr8-116439121-2	chr8	116438621	116439621	+	835.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65894.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-49751042-2	chr2	49750542	49751542	+	835.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008449, intron 22 of 25)	intron (NM_008449, intron 22 of 25)	-36644.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113773490-2	chr5	113772990	113773990	+	835.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025526, intron 1 of 4)	intron (NM_025526, intron 1 of 4)	678.0	NM_025526	66383.0	Mm.29497	NM_025526	ENSMUSG00000025825	Iscu	2310020H20Rik|AA407971|Nifu|Nifun	iron-sulfur cluster assembly enzyme	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-63857356-3	chr17	63856891	63857891	+	835.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD|LINE|L1	-6590.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-73330302-2	chr4	73329802	73330802	+	835.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74770.0	NM_001013393	433719.0	Mm.348294	NM_001013393	ENSMUSG00000066137	Gm11487	-	predicted gene 11487	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95369527-2	chr10	95369027	95370027	+	835.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33251.0	NR_045337	69629.0	Mm.250542	NR_045337	ENSMUSG00000100550	2310039L15Rik	A53T-syn|G2-3|PrPsynA53T|Tg(Prnp-SNCA*A53T)23Mkle	RIKEN cDNA 2310039L15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116144568-2	chr11	116144068	116145068	+	835.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172571, intron 29 of 30)	intron (NM_172571, intron 29 of 30)	-5700.0	NM_024177	60441.0	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	1.5	17.0	5.0	1.5	13.5	3.0
Merged-chr1-153500656-1	chr1	153500156	153501156	+	835.0	f0_balb.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-12996.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91917261-2	chr16	91916761	91917761	+	835.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010587, exon 39 of 39)	3' UTR (NM_010587, exon 39 of 39)	14369.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57253828-2	chr17	57253328	57254328	+	835.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001242390, intron 5 of 14)	RSINE1|SINE|B4	4377.0	NM_001242389	106628.0	Mm.37368	NM_134125	ENSMUSG00000019487	Trip10	AI646975|Cip4	thyroid hormone receptor interactor 10	protein-coding	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr8-117338391-4	chr8	117337875	117338875	+	835.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	ID_B1|SINE|B4	-10795.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98821558-2	chr15	98821058	98822058	+	835.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016781, intron 2 of 11)	B3|SINE|B2	9950.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100234337-2	chr7	100233837	100234837	+	835.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027629, intron 1 of 13)	RMER15|LTR|ERVL	6730.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	0.5	0.0	0.5	1.0	0.0	0.0
Merged-chr3-116146804-2	chr3	116146304	116147304	+	835.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-17116.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180702948-4	chr2	180702417	180703417	+	835.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175551)	promoter-TSS (NM_175551)	-815.0	NM_175551	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104354749-2	chr8	104354249	104355249	+	835.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153582, exon 4 of 4)	3' UTR (NM_153582, exon 4 of 4)	14155.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84443917-1	chr1	84443417	84444417	+	835.0	f0_balb.idr	intron (NM_152915, intron 8 of 12)	intron (NM_152915, intron 8 of 12)	-159272.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-56884069-2	chr14	56883569	56884569	+	835.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-2534.0	NM_177627	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105859605-2	chr8	105859105	105860105	+	835.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357229)	promoter-TSS (NM_001357229)	-928.0	NM_026532	68051.0	Mm.455474	NM_026532	ENSMUSG00000008450	Nutf2	2700067I02Rik|AI115459|AI413596|AW546000|Ntf2|Ntf3|PP15	nuclear transport factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-91206749-2	chr10	91206249	91207249	+	835.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	13870.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	0.0	6.0	0.0	4.0	8.0	0.0
Merged-chr13-9176205-2	chr13	9175705	9176705	+	835.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82324.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10582581-2	chr19	10582081	10583081	+	835.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362431, intron 4 of 7)	intron (NM_001362431, intron 4 of 7)	5133.0	NM_001282067	225912.0	Mm.252701	NM_201351	ENSMUSG00000034445	Cyb561a3	2310004G04Rik|Cybasc3|Lcytb	cytochrome b561 family, member A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-135562731-3	chr2	135562232	135563232	+	835.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A1|LTR|ERVL	20488.0	NR_015544	320684.0	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150912972-2	chr4	150912472	150913472	+	835.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3051.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75489760-2	chr11	75489260	75490260	+	835.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_138659, exon 3 of 42)	exon (NM_138659, exon 3 of 42)	2983.0	NM_138659	192159.0	Mm.3757	NM_138659	ENSMUSG00000020850	Prpf8	AU019467|D11Bwg0410e|DBF3/PRP8|Prp8|Sfprp8l	pre-mRNA processing factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46801453-2	chr8	46800953	46801953	+	835.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 2 of 7)	intron (NR_152560, intron 2 of 7)	61708.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-58797086-4	chr2	58796587	58797587	+	835.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41903.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7265647-2	chr19	7265147	7266147	+	835.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1747.0	NM_054048	104383.0	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23535878-2	chr13	23535378	23536378	+	835.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145073)	TTS (NM_145073)	460.0	NM_145073	97908.0	Mm.261657	NM_145073	ENSMUSG00000099517	Hist1h3g	H3.1-221|M32460	histone cluster 1, H3g	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83615968-1	chr7	83615468	83616468	+	835.0	f0_c57.idr	exon (NM_177695, exon 18 of 23)	exon (NM_177695, exon 18 of 23)	-16049.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37050865-2	chr19	37050365	37051365	+	835.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198300, intron 9 of 10)	intron (NM_198300, intron 9 of 10)	-122978.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29738486-2	chr2	29737986	29738986	+	835.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001039087, exon 26 of 26)	3' UTR (NM_001039087, exon 26 of 26)	-23042.0	NM_001177392	433416.0	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	-	predicted gene 13547	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71624849-2	chr8	71624350	71625350	+	835.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_146211)	TTS (NM_146211)	6256.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	33.0	32.5	18.5	15.0	36.0	35.5
Merged-chr13-113586346-2	chr13	113585846	113586846	+	835.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32218.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38742667-3	chr6	38742155	38743155	+	835.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 6 of 14)	intron (NM_010433, intron 6 of 14)	79586.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153347484-2	chr2	153346984	153347984	+	835.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039939, intron 1 of 11)	intron (NM_001039939, intron 1 of 11)	1345.0	NM_001039939	228790.0	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	11.0	14.5	22.0	5.0	15.5	15.0
Merged-chr16-96146695-2	chr16	96146195	96147195	+	835.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207301, intron 1 of 4)	B3|SINE|B2	1276.0	NM_207301	71446.0	Mm.255063	NM_207301	ENSMUSG00000023147	Wrb	5530402J05Rik|C030018G21Rik|Chd5	tryptophan rich basic protein	protein-coding	1.5	0.0	1.5	0.0	0.0	0.5
Merged-chr4-41359560-4	chr4	41359069	41360069	+	835.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355508, intron 1 of 6)	B1F2|SINE|Alu	7606.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-178339863-2	chr1	178339363	178340363	+	835.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-2048.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-45443889-2	chr12	45443389	45444389	+	835.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-369406.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-91190883-2	chr15	91190383	91191383	+	835.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001358967, exon 1 of 10)	exon (NM_001358967, exon 1 of 10)	1124.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-54500072-2	chr9	54499572	54500572	+	835.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172771, intron 1 of 43)	RSINE1|SINE|B4	1554.0	NM_172771	235380.0	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113625290-3	chr6	113624792	113625792	+	834.972229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009507, intron 1 of 2)	B1_Mm|SINE|Alu	1271.0	NM_009507	22346.0	Mm.29407	NM_009507	ENSMUSG00000033933	Vhl	Vhlh	von Hippel-Lindau tumor suppressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44384123-4	chr7	44383617	44384617	+	834.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001114116)	promoter-TSS (NM_001114116)	-9.0	NM_001114116	20981.0	Mm.4824	NM_016663	ENSMUSG00000030731	Syt3	AI385753|sytIII	synaptotagmin III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4790510-4	chr18	4790036	4791036	+	834.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-21950.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	1.0	0.0	0.0	0.0	3.0	1.0
Merged-chr2-144642166-3	chr2	144641676	144642676	+	834.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025314, intron 4 of 5)	intron (NM_025314, intron 4 of 5)	42223.0	NM_025314	66044.0	Mm.28109	NM_025314	ENSMUSG00000027430	Dtd1	0610006H08Rik|DTD|DUE-B|Hars2	D-tyrosyl-tRNA deacylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143919529-6	chr5	143919042	143920042	+	834.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008886, exon 8 of 15)	exon (NM_008886, exon 8 of 15)	9541.0	NM_008886	18861.0	Mm.2950	NM_008886	ENSMUSG00000075569	Pms2	AW555130|Pmsl2	PMS1 homolog2, mismatch repair system component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55858644-3	chr13	55858138	55859138	+	834.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27213.0	NM_011097	18740.0	Mm.135195	NM_011097	ENSMUSG00000021506	Pitx1	Bft|P-OTX|Potx|Ptx1	paired-like homeodomain transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-20961486-4	chr2	20960985	20961985	+	834.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128084, intron 1 of 24)	intron (NM_001128084, intron 1 of 24)	6236.0	NM_001081364	71435.0	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	0.0	0.0	0.0	2.5	0.0	1.0
Merged-chr13-107844499-4	chr13	107843888	107844888	+	834.924988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	45676.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	8.0	41.0	29.0	7.5	27.5	22.5
Merged-chr16-3718563-2	chr16	3718063	3719063	+	834.916687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161790)	promoter-TSS (NM_001161790)	-439.0	NM_001161791	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-4870704-4	chr1	4870225	4871225	+	834.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159750, intron 2 of 9)	MTD|LTR|ERVL-MaLR	12397.0	NM_001159751	21399.0	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5706799-4	chr2	5706303	5707303	+	834.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	7959.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	4.0	11.0	13.0	4.0	11.0	13.0
Merged-chr7-114415932-6	chr7	114415482	114416482	+	834.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029437)	promoter-TSS (NR_029437)	728.0	NM_011055	18576.0	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8931152-3	chr3	8930653	8931653	+	834.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001025261, exon 8 of 8)	exon (NM_001025261, exon 8 of 8)	-7296.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56298637-4	chr17	56298147	56299147	+	834.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029799, intron 1 of 2)	B2_Mm2|SINE|B2	1639.0	NM_029799	76920.0	Mm.329132	NM_029799	ENSMUSG00000073380	Arrdc5	1700013E09Rik	arrestin domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53585316-4	chr15	53584827	53585827	+	834.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	28952.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7227491-4	chr9	7226991	7227991	+	834.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	42986.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84646302-4	chr18	84645813	84646813	+	834.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177450, intron 1 of 11)	intron (NM_177450, intron 1 of 11)	3782.0	NM_177450	338403.0	Mm.23278	NM_177450	ENSMUSG00000056162	Cndp1	AI746433|Cn1	carnosine dipeptidase 1 (metallopeptidase M20 family)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106883733-7	chr1	106883207	106884207	+	834.904785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360853)	TTS (NM_001360853)	22532.0	NM_009257	20724.0	Mm.268618	NM_009257	ENSMUSG00000067006	Serpinb5	1110036M19Rik|AI462524|AI646751|Maspin|PI-5|Spi7|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-40322750-4	chr1	40322252	40323252	+	834.895813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1837.0	NM_001356478	107527.0	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-28109519-3	chr3	28109064	28110064	+	834.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 20 of 25)	intron (NM_008875, intron 20 of 25)	125393.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149549468-3	chr4	149548949	149549949	+	834.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023465, intron 4 of 4)	intron (NM_023465, intron 4 of 4)	4332.0	NM_001141930	67087.0	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	3.0	0.5	0.0	0.5	0.5	1.0
Merged-chr16-11550551-3	chr16	11550058	11551058	+	834.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 14 of 20)	intron (NM_028964, intron 14 of 20)	144910.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32441672-3	chr2	32441172	32442172	+	834.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146118, intron 1 of 10)	intron (NM_146118, intron 1 of 10)	-8785.0	NM_194335	71254.0	Mm.102341	NM_194335	ENSMUSG00000039164	Naif1	2310007O20Rik|4933440H19Rik	nuclear apoptosis inducing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-106793724-4	chr6	106793232	106794232	+	834.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021449, intron 4 of 10)	intron (NM_021449, intron 4 of 10)	6355.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12810641-4	chr17	12810111	12811111	+	834.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027784, intron 2 of 2)	intron (NR_027784, intron 2 of 2)	-40905.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10183618-5	chr19	10183168	10184168	+	834.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146094, intron 1 of 11)	intron (NM_146094, intron 1 of 11)	780.0	NM_146094	76267.0	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	4.5	16.5	8.5	18.5	31.5	26.0
Merged-chr9-63737616-4	chr9	63737126	63738126	+	834.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	20368.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25215955-2	chr8	25215455	25216455	+	834.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-14413.0	NM_177089	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52030376-3	chr3	52029910	52030910	+	834.833374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	74596.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125588835-2	chr7	125588334	125589334	+	834.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14595.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	5.0	0.0	0.5	0.0	11.0	1.0
Merged-chr2-75769292-2	chr2	75768827	75769827	+	834.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-62850.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	8.5	5.0	5.0	8.0	0.0	0.0
Merged-chr19-44545823-2	chr19	44545323	44546323	+	834.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033343)	promoter-TSS (NM_001033343)	25.0	NM_001033343	240667.0	Mm.329873	NM_001033343	ENSMUSG00000051984	Sec31b	Gm341|Sec31l2	Sec31 homolog B (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-111064823-3	chr11	111064324	111065324	+	834.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1340.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	14.5	33.0	10.5	14.0	13.5	13.5
Merged-chr4-40781378-3	chr4	40780880	40781880	+	834.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23495.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90156159-3	chr3	90155663	90156663	+	834.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029937, intron 15 of 39)	MTE2a|LTR|ERVL-MaLR	52031.0	NM_029937	77595.0	Mm.159949	NM_029937	ENSMUSG00000027939	Nup210l	4930548O11Rik|R26-EGFP|Tg(Gt(ROSA)26Sor-EGFP)130910Eps	nucleoporin 210-like	protein-coding	8.5	9.5	4.0	8.5	2.0	4.0
Merged-chr2-117341716-2	chr2	117341216	117342216	+	834.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 1 of 16)	intron (NM_011246, intron 1 of 16)	1161.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124832427-2	chr6	124831927	124832927	+	834.833313	f1_balb.idr|f1_c57bl6.idr	exon (NM_013538, exon 4 of 6)	exon (NM_013538, exon 4 of 6)	2251.0	NM_013538	14793.0	Mm.285723	NM_013538	ENSMUSG00000023505	Cdca3	2410005A12Rik|C8|Grcc8|Tome-1	cell division cycle associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-58224547-2	chr10	58224047	58225047	+	834.8000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8128.0	NM_001081954	664783.0	Mm.482575	NM_001081954		Dux	AW822073|Dux4|Duxbl|EG664783	double homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93055707-4	chr16	93055164	93056164	+	834.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-229590.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-59623499-4	chr1	59623003	59624003	+	834.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013771, intron 13 of 19)	intron (NM_001013771, intron 13 of 19)	47331.0	NM_009460	22218.0	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129308323-7	chr2	129307838	129308838	+	834.780945	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040371)	TTS (NR_040371)	1634.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69582583-2	chr11	69582083	69583083	+	834.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127233, intron 1 of 10)	intron (NM_001127233, intron 1 of 10)	2224.0	NM_001127233	22059.0	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54760319-4	chr6	54759795	54760795	+	834.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56621.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0.0	3.0	0.0	0.0	6.0	4.5
Merged-chr1-75219906-2	chr1	75219406	75220406	+	834.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009447)	promoter-TSS (NM_009447)	-612.0	NM_001313724	22145.0	Mm.1155	NM_009447	ENSMUSG00000026202	Tuba4a	M[a]4|Tuba4	tubulin, alpha 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119005142-4	chr4	119004613	119005613	+	834.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43146.0	NM_133892	100470.0	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	0.0	0.0	1.0	0.0	0.5	4.0
Merged-chr13-17914789-4	chr13	17914302	17915302	+	834.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019491, intron 1 of 4)	intron (NM_019491, intron 1 of 4)	29415.0	NM_019491	56044.0	Mm.27348	NM_019491	ENSMUSG00000008859	Rala	3010001O15Rik|AW322615|Ral|Rasl1	v-ral simian leukemia viral oncogene A (ras related)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10743824-6	chr17	10743307	10744307	+	834.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	96384.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0.0	1.5	1.5	3.0	1.0	9.0
Merged-chr9-56118698-4	chr9	56118175	56119175	+	834.71875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011193, intron 3 of 14)	intron (NM_011193, intron 3 of 14)	28699.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-21775635-4	chr4	21775123	21776123	+	834.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290425)	promoter-TSS (NM_001290425)	-647.0	NM_001290425	77593.0	Mm.154306	NM_152825	ENSMUSG00000040455	Usp45	3110003C05Rik|4930550B20Rik|AI843191|Gcap7	ubiquitin specific petidase 45	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-76179402-4	chr5	76178911	76179911	+	834.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4469.0	NM_011626	21982.0	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-151139723-2	chr4	151139223	151140223	+	834.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 9 of 23)	intron (NM_001081557, intron 9 of 23)	50153.0	NM_001308446	105704528.0	Mm.415128	NM_001308446	ENSMUSG00000078491	Gm13090	-	predicted gene 13090	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144572369-4	chr3	144571883	144572883	+	834.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053102, intron 1 of 4)	intron (NM_053102, intron 1 of 4)	1956.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45581549-5	chr17	45581105	45582105	+	834.676208	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8344.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20869356-3	chr9	20868879	20869879	+	834.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175687, exon 2 of 8)	exon (NM_175687, exon 2 of 8)	737.0	NM_175687	319278.0	Mm.249932	NM_175687	ENSMUSG00000038884	A230050P20Rik	RyDEN	RIKEN cDNA A230050P20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53673634-3	chr15	53673143	53674143	+	834.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177225, intron 3 of 4)	L2|LINE|L2	-59364.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26068917-3	chr17	26068417	26069417	+	834.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001162868, exon 1 of 14)	exon (NM_001162868, exon 1 of 14)	260.0	NM_001162868	215445.0	Mm.41191	NM_153140	ENSMUSG00000037098	Rab11fip3	Cart1|D030060O14Rik|Rab11-FIP3|mKIAA0665	RAB11 family interacting protein 3 (class II)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103552300-4	chr15	103551807	103552807	+	834.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12774.0	NM_001289587	14663.0	Mm.219621	NM_008134	ENSMUSG00000022491	Glycam1	MC26|Sgp50|glyCAM-1	glycosylation dependent cell adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-83011845-4	chr18	83011350	83012350	+	834.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91290.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-47939981-4	chr8	47939507	47940507	+	834.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133791, intron 1 of 22)	intron (NM_133791, intron 1 of 22)	50544.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-13523722-3	chr13	13523232	13524232	+	834.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66677.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-65421685-4	chr7	65421181	65422181	+	834.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50437.0	NM_009386	21872.0	Mm.4342	NM_009386	ENSMUSG00000030516	Tjp1	ZO1	tight junction protein 1	protein-coding	2.5	0.0	0.0	0.0	0.0	0.0
Merged-chr6-127146099-4	chr6	127145603	127146603	+	834.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009829, exon 3 of 5)	exon (NM_009829, exon 3 of 5)	-3286.0	NR_040274	77558.0	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96171075-3	chr3	96170612	96171612	+	834.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_181409, exon 17 of 17)	exon (NM_181409, exon 17 of 17)	-1394.0	NM_153053	107701.0	Mm.219671	NM_153053	ENSMUSG00000068856	Sf3b4	SF3b49|SF3b50|Sap49	splicing factor 3b, subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-43930296-4	chr16	43929779	43930779	+	834.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027801, intron 6 of 15)	intron (NM_027801, intron 6 of 15)	40377.0	NM_027801	212153.0	Mm.209835	NM_027801	ENSMUSG00000022701	Ccdc191	2610015P09Rik|8430422M09Rik|AU040712	coiled-coil domain containing 191	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77748216-1	chr9	77747716	77748716	+	834.666687	f0_balb.idr	Intergenic	RMER4B|LTR|ERVK	-6319.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	0.0	0.0	7.0	0.5	1.0	3.0
Merged-chr9-53389729-2	chr9	53389229	53390229	+	834.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_212445, intron 2 of 7)	intron (NM_212445, intron 2 of 7)	5706.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149160178-4	chr4	149159750	149160750	+	834.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081274, intron 5 of 12)	intron (NM_001081274, intron 5 of 12)	5832.0	NM_001356332	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70800597-3	chr14	70800109	70801109	+	834.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26228.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	13.5	24.5	18.0	20.0	60.5	17.5
Merged-chr17-48264856-4	chr17	48264339	48265339	+	834.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172623, exon 2 of 6)	exon (NM_172623, exon 2 of 6)	544.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110680874-4	chr9	110680385	110681385	+	834.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	RMER4B|LTR|ERVK	24382.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40774458-4	chr4	40773928	40774928	+	834.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID2|SINE|ID	-16543.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98792728-4	chr15	98792142	98793142	+	834.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021279, exon 4 of 4)	exon (NM_021279, exon 4 of 4)	2785.0	NM_021279	22408.0	Mm.1123	NM_021279	ENSMUSG00000022997	Wnt1	Int-1|Wnt-1|sw|swaying	wingless-type MMTV integration site family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27863166-3	chr15	27862659	27863659	+	834.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 11 of 56)	intron (NM_001081302, intron 11 of 56)	162689.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117199535-6	chr4	117199058	117200058	+	834.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-16934.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-113173014-1	chr11	113172514	113173514	+	834.599976	f0_c57.idr	intron (NR_015556, intron 1 of 2)	intron (NR_015556, intron 1 of 2)	28824.0	NR_015556	72386.0	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr7-92884571-4	chr7	92884065	92885065	+	834.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028243, intron 1 of 8)	intron (NM_028243, intron 1 of 8)	9312.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-28511722-2	chr2	28511240	28512240	+	834.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1427.0	NM_009058	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135801684-4	chr4	135801185	135802185	+	834.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085509, intron 27 of 36)	intron (NM_001085509, intron 27 of 36)	41970.0	NM_001085509	242702.0	Mm.318639	NM_001085509	ENSMUSG00000037139	Myom3	8430427K15Rik|Gm434	myomesin family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-23812279-4	chr10	23811823	23812823	+	834.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183116, intron 6 of 13)	intron (NM_183116, intron 6 of 13)	15337.0	NM_001358812	76306.0	Mm.294271	NM_183116	ENSMUSG00000037455	Slc18b1	1110021L09Rik	solute carrier family 18, subfamily B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152671856-4	chr2	152671371	152672371	+	834.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010376, intron 1 of 11)	intron (NM_010376, intron 1 of 11)	2410.0	NM_001159552	14950.0	Mm.277327	NM_010376	ENSMUSG00000019188	H13	1200006O09Rik|4930443L17Rik|5031424B04Rik|AV020344|H-13|Hm13|PSL3|Spp	histocompatibility 13	protein-coding	11.0	16.0	9.5	8.5	9.5	12.5
Merged-chr17-34951002-4	chr17	34950566	34951566	+	834.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028527)	promoter-TSS (NR_028527)	-58.0	NR_028527	100217427.0		NR_028527	ENSMUSG00000093009	Snord52	MBII-297	small nucleolar RNA, C/D box 52	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143748614-3	chr7	143748126	143749126	+	834.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6663.0	NM_024289	79196.0	Mm.21199	NM_024289	ENSMUSG00000037606	Osbpl5	1110006M06Rik|AI462538|ORP5|Obph1|Osbp2	oxysterol binding protein-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-103915891-3	chr13	103915388	103916388	+	834.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005868, intron 1 of 26)	intron (NM_001005868, intron 1 of 26)	4698.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.0	0.5	0.5	0.0	0.0	0.0
Merged-chr2-103051349-3	chr2	103050860	103051860	+	834.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175094, intron 2 of 10)	intron (NM_175094, intron 2 of 10)	22153.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	3.0	7.0	9.0	15.0	9.5	10.5
Merged-chr8-83653698-6	chr8	83653350	83654350	+	834.527771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018771, intron 1 of 6)	intron (NM_018771, intron 1 of 6)	1172.0	NM_018771	67903.0	Mm.20945	NM_018771	ENSMUSG00000019433	Gipc1	GIPC|Glut1CIP|Rgs19ip1|Semcap1|TIP-2|TaxIP2	GIPC PDZ domain containing family, member 1	protein-coding	25.5	59.5	29.0	21.0	29.5	25.5
Merged-chr7-75655406-4	chr7	75654889	75655889	+	834.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	-192949.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	30.0	112.0	89.5	20.5	79.0	89.5
Merged-chr11-99166480-2	chr11	99165980	99166980	+	834.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11403.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46201093-2	chr18	46200593	46201593	+	834.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178872, intron 1 of 9)	intron (NM_178872, intron 1 of 9)	-2275.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr19-5473286-2	chr19	5472786	5473786	+	834.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1404.0	NM_021474	58859.0	Mm.276367	NM_021474	ENSMUSG00000024909	Efemp2	0610011K11Rik|Fbln4|MBP1	epidermal growth factor-containing fibulin-like extracellular matrix protein 2	protein-coding	2.0	2.0	16.5	6.5	20.0	9.0
Merged-chr2-26504478-2	chr2	26503978	26504978	+	834.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008714)	promoter-TSS (NM_008714)	551.0	NR_132655	102639736.0		NR_132655		Gm35978	-	predicted gene, 35978	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72808664-2	chr5	72808164	72809164	+	834.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	-55887.0	NM_001122754	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100942156-2	chr11	100941656	100942656	+	834.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2616.0	NM_011486	20848.0	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-26138650-2	chr11	26138151	26139151	+	834.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_027973, intron 1 of 5)	intron (NR_027973, intron 1 of 5)	-63589.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	2.0	7.5	1.5	3.0	8.5	2.0
Merged-chr5-38479171-3	chr5	38478694	38479694	+	834.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145559, intron 2 of 10)	intron (NM_145559, intron 2 of 10)	1112.0	NM_001102414	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11423479-2	chr2	11422979	11423979	+	834.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24979.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128780813-2	chr2	128780313	128781313	+	834.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 13 of 18)	intron (NM_008587, intron 13 of 18)	-37490.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	12.5	5.5	1.5	6.5	2.5	7.0
Merged-chr17-64744205-2	chr17	64743705	64744705	+	834.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 20 of 21)	intron (NM_008549, intron 20 of 21)	-22906.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-18271949-2	chr14	18271447	18272447	+	834.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025586)	promoter-TSS (NM_025586)	811.0	NM_023526	69721.0	Mm.25648	NM_023526	ENSMUSG00000021772	Nkiras1	2400004O09Rik|KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras-like protein 1	protein-coding	1.0	12.0	8.5	16.0	24.0	9.0
Merged-chr9-104235793-2	chr9	104235293	104236293	+	834.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 5 of 56)	intron (NM_001359740, intron 5 of 56)	27137.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96938931-4	chr3	96938424	96939424	+	834.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12873.0	NM_008123	14616.0	Mm.258183	NM_008123	ENSMUSG00000049908	Gja8	Aey5|Cnx50|Cx50|Lop10	gap junction protein, alpha 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-27870882-2	chr4	27870382	27871382	+	834.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	-942249.0	NM_001290434	13841.0	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	0.0	0.5	1.0	0.0	6.5	4.5
Merged-chr8-70633467-2	chr8	70632932	70633932	+	834.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330687)	promoter-TSS (NM_001330687)	-976.0	NM_001330687	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	41.5	36.0	47.5	4.0	27.0	15.5
Merged-chr4-40700923-2	chr4	40700423	40701423	+	834.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025444, intron 1 of 7)	intron (NM_001025444, intron 1 of 7)	1993.0	NM_025545	66408.0	Mm.430710	NM_025545	ENSMUSG00000028411	Aptx	2410016G21Rik|AA388047|FHA-HIT	aprataxin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-125472407-2	chr1	125471907	125472907	+	834.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-36680.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20795965-2	chr10	20795465	20796465	+	834.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-70887.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100174560-2	chr13	100174060	100175060	+	834.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001126182, intron 8 of 15)	intron (NM_001126182, intron 8 of 15)	27562.0	NM_001126182	17948.0	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	1.5	8.0	5.5	1.5	8.0	8.5
Merged-chr15-101274284-2	chr15	101273784	101274784	+	834.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010444, exon 7 of 7)	3' UTR (NM_010444, exon 7 of 7)	7438.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102147016-2	chr15	102146516	102147516	+	834.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008344, intron 1 of 3)	intron (NM_008344, intron 1 of 3)	2830.0	NM_008344	16012.0	Mm.358609	NM_008344	ENSMUSG00000023046	Igfbp6	IGFBP-6	insulin-like growth factor binding protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43548859-2	chr17	43548359	43549359	+	834.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5220.0	NM_001254953	100043332.0	Mm.17626	NM_001254953	ENSMUSG00000096140	Ankrd66	AU041848|D730048J04Rik|Gm4368	ankyrin repeat domain 66	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132352800-2	chr4	132352300	132353300	+	834.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_003270, intron 1 of 2)	U17|snRNA|snRNA	886.0	NR_003270	399101.0	Mm.486919	NR_002904	ENSMUSG00000085241	Snhg3	Rnu17d|U17HG	small nucleolar RNA host gene 3	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39557247-2	chr18	39556747	39557747	+	834.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70002.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52043056-2	chr13	52042556	52043556	+	834.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53685.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113796501-2	chr5	113796001	113797001	+	834.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146162, intron 1 of 1)	intron (NM_146162, intron 1 of 1)	3851.0	NM_146162	231633.0	Mm.41681	NM_146162	ENSMUSG00000054675	Tmem119	AW208946|BC025600|obif	transmembrane protein 119	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141731977-4	chr4	141731488	141732488	+	834.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8569.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	32.5	63.5	44.0	24.5	60.5	71.5
Merged-chr18-6792950-2	chr18	6792450	6793450	+	834.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27783.0	NM_001278447	19330.0	Mm.132802	NM_181070	ENSMUSG00000073639	Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83564351-4	chr15	83563859	83564859	+	834.479187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009775, intron 1 of 3)	intron (NM_009775, intron 1 of 3)	786.0	NM_009775	12257.0	Mm.1508	NM_009775	ENSMUSG00000041736	Tspo	Bzrp|IBP|PBR|Tspo1	translocator protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141638324-3	chr4	141637808	141638808	+	834.477783	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033150, intron 6 of 19)	intron (NM_001033150, intron 6 of 19)	-14474.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	12.5	22.5	16.0	8.5	14.5	9.5
Merged-chr4-84362549-3	chr4	84362053	84363053	+	834.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172870, intron 4 of 5)	intron (NM_172870, intron 4 of 5)	312533.0	NM_172870	242509.0	Mm.190774	NM_172870	ENSMUSG00000028487	Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding	0.5	13.5	5.0	4.5	3.0	3.0
Merged-chr7-116444422-4	chr7	116443953	116444953	+	834.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011083)	promoter-TSS (NM_011083)	-995.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-79715802-4	chr17	79715334	79716334	+	834.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009994)	promoter-TSS (NM_009994)	-793.0	NM_009994	13078.0	Mm.214016	NM_009994	ENSMUSG00000024087	Cyp1b1	CP1B|P4501b1	cytochrome P450, family 1, subfamily b, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46174093-3	chr18	46173588	46174588	+	834.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178872, intron 7 of 9)	intron (NM_178872, intron 7 of 9)	24730.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	10.0	5.0	4.5	8.5	2.0	6.0
Merged-chr14-87417730-3	chr14	87417263	87418263	+	834.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253755, intron 1 of 11)	intron (NM_001253755, intron 1 of 11)	1180.0	NM_001253755	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	18.0	46.5	17.5	6.0	44.5	18.5
Merged-chr11-78465778-4	chr11	78465347	78466347	+	834.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026740, exon 1 of 5)	exon (NM_026740, exon 1 of 5)	146.0	NM_026740	52466.0	Mm.131618	NM_026740	ENSMUSG00000020829	Slc46a1	1110002C08Rik|D11Ertd18e|HCP1|Pcft	solute carrier family 46, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66090250-4	chr5	66089749	66090749	+	834.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	7930.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	37.0	17.5	25.5	3.0	15.5	9.5
Merged-chr9-114727533-4	chr9	114727070	114728070	+	834.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3633.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-68094000-3	chr7	68093507	68094507	+	834.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	141750.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6570629-4	chr15	6570138	6571138	+	834.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9209.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79286533-4	chr11	79286022	79287022	+	834.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31827.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	11.0	19.5	5.0	2.0	10.5	11.0
Merged-chr7-121073739-4	chr7	121073256	121074256	+	834.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030691, intron 1 of 5)	intron (NM_030691, intron 1 of 5)	774.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120363284-4	chr6	120362767	120363767	+	834.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145997)	promoter-TSS (NM_145997)	-832.0	NM_145997	214899.0	Mm.404761	NM_145997	ENSMUSG00000030180	Kdm5a	AA409370|C76986|Jarid1a|RBP2|Rbbp2	lysine (K)-specific demethylase 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-83065455-3	chr13	83064953	83065953	+	834.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-367120.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	2.0	4.0	2.0	1.0	2.0	4.5
Merged-chr7-63906533-3	chr7	63905980	63906980	+	834.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	MTEb|LTR|ERVL-MaLR	-10377.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84699657-3	chr18	84699160	84700160	+	834.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR15|LTR|ERVK	-13958.0	NM_023149	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54748479-3	chr14	54747976	54748976	+	834.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	33410.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	20.0	28.5	25.5	9.5	17.5	16.5
Merged-chr5-138659106-4	chr5	138658600	138659600	+	834.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36241.0	NM_183025	243308.0	Mm.36612	NM_183025	ENSMUSG00000056014	A430033K04Rik	C86988	RIKEN cDNA A430033K04 gene	protein-coding	0.0	0.0	2.0	3.5	0.5	0.5
Merged-chr3-98061309-4	chr3	98060859	98061859	+	834.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 2 of 33)	intron (NM_010928, intron 2 of 33)	47821.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83191246-4	chr11	83190745	83191745	+	834.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011409)	promoter-TSS (NM_011409)	-85.0	NM_011409	20557.0	Mm.290922	NM_011409	ENSMUSG00000018986	Slfn3	-	schlafen 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-91180324-6	chr10	91179913	91180913	+	834.3555299999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8794.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129588141-4	chr2	129587616	129588616	+	834.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4723.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	5.0	2.5	4.0	12.0	6.5	15.5
Merged-chr7-73593822-2	chr7	73593322	73594322	+	834.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	-35427.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59000270-2	chr13	58999770	59000770	+	834.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	192573.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	7.0	44.5	33.5	4.0	22.5	13.0
Merged-chr3-86919794-2	chr3	86919209	86920209	+	834.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195500, intron 1 of 11)	CpG	1175.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	2.5	4.0	0.0	1.0	3.0	0.0
Merged-chr2-102885532-4	chr2	102885042	102886042	+	834.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	16123.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	7.5	15.5	5.5	7.5	15.5	5.5
Merged-chr3-117868305-3	chr3	117867814	117868814	+	834.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190156, intron 1 of 7)	intron (NM_001190156, intron 1 of 7)	622.0	NM_001190156	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79838313-3	chr12	79837748	79838748	+	834.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86485.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22824009-3	chr9	22823507	22824507	+	834.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360259, intron 21 of 22)	intron (NM_001360259, intron 21 of 22)	348292.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5183440-2	chr17	5182940	5183940	+	834.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	188366.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54991257-2	chr11	54990757	54991757	+	834.333313	f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 19 of 24)	intron (NR_138556, intron 19 of 24)	-28317.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104994097-4	chr3	104993660	104994660	+	834.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32451.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102181614-3	chr2	102181095	102182095	+	834.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178886, intron 1 of 5)	intron (NM_178886, intron 1 of 5)	4865.0	NM_178886	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	2.5	0.0	0.5	1.5	0.0	0.0
Merged-chr4-35068337-3	chr4	35067817	35068817	+	834.311096	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 2 of 3)	intron (NM_178061, intron 2 of 3)	-83738.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35734242-4	chr16	35733740	35734740	+	834.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 3 of 8)	intron (NM_153550, intron 3 of 8)	35116.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	4.0	6.0	3.0	2.5	0.0	1.5
Merged-chr5-135144437-4	chr5	135143935	135144935	+	834.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5276.0	NM_013763	27368.0	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50528170-3	chr17	50527672	50528672	+	834.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	18625.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	2.5	16.0	9.0	4.0	9.0	26.5
Merged-chr12-3712736-3	chr12	3712255	3713255	+	834.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 9 of 17)	intron (NM_001162465, intron 9 of 17)	-94225.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45742566-3	chr7	45742092	45743092	+	834.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360784)	promoter-TSS (NM_001360784)	-114.0	NM_001360784	54200.0	Mm.271634	NM_017465	ENSMUSG00000003271	Sult2b1	AI326997|BB173635|ST2B1|SULT2B	sulfotransferase family, cytosolic, 2B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115537078-3	chr8	115536549	115537549	+	834.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	169845.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123528847-5	chr9	123528285	123529285	+	834.266663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030692)	promoter-TSS (NM_030692)	-968.0	NM_001357485	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120601652-4	chr9	120601138	120602138	+	834.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24307.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47445093-3	chr14	47444573	47445573	+	834.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-26666.0	NM_144553	218977.0	Mm.240543	NM_144553	ENSMUSG00000037544	Dlgap5	C77459|C86398|Dap-5|Dlg7|Hurp|mKIAA0008	DLG associated protein 5	protein-coding	4.5	4.0	3.0	19.0	16.0	14.0
Merged-chr8-79196913-3	chr8	79196388	79197388	+	834.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51695.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97701742-3	chr11	97701273	97702273	+	834.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1276.0	NM_009545	22658.0	Mm.2418	NM_009545	ENSMUSG00000018537	Pcgf2	Mel18|Rnf110|Zfp144|mel-18	polycomb group ring finger 2	protein-coding	1.5	2.0	0.0	0.0	2.0	4.0
Merged-chr14-57395084-4	chr14	57394591	57395591	+	834.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030004, intron 1 of 7)	intron (NM_030004, intron 1 of 7)	3392.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45099234-4	chr2	45098763	45099763	+	834.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	11014.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34216137-4	chr8	34215584	34216584	+	834.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49372.0	NR_105820	102465211.0		NR_105820	ENSMUSG00000098785	Mir6395	Gm27561|mmu-mir-6395	microRNA 6395	ncRNA	7.0	7.5	18.5	4.0	1.0	6.0
Merged-chr8-105305791-5	chr8	105305314	105306314	+	834.200012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_148952)	TTS (NM_148952)	213.0	NM_172760	234683.0	Mm.237966	NM_172760	ENSMUSG00000014791	Elmo3	9930107J06|BC058752|CED-12|Ced12	engulfment and cell motility 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51582937-4	chr11	51582486	51583486	+	834.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153393, exon 29 of 29)	3' UTR (NM_153393, exon 29 of 29)	-1771.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51059346-4	chr11	51058844	51059844	+	834.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347495)	promoter-TSS (NM_001347495)	87.0	NM_001347495	21408.0	Mm.4792	NM_009329	ENSMUSG00000020364	Zfp354a	AW488485|Tcf17|Znf354a|kid1	zinc finger protein 354A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29085656-2	chr17	29085210	29086210	+	834.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5269.0	NM_001111099	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116337271-2	chr11	116336771	116337771	+	834.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027258, exon 19 of 19)	3' UTR (NM_027258, exon 19 of 19)	-1917.0	NM_008240	15223.0	Mm.378938	NM_008240	ENSMUSG00000034227	Foxj1	FKHL-13|HFH-4|Hfh4	forkhead box J1	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr11-115643521-4	chr11	115643042	115644042	+	834.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008163)	TTS (NM_008163)	-15247.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13339159-4	chr8	13338706	13339706	+	834.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358991, intron 1 of 12)	CpG	402.0	NM_009361	21781.0	Mm.925	NM_009361	ENSMUSG00000038482	Tfdp1	Dp1|Drtf1	transcription factor Dp 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191283221-2	chr1	191282715	191283715	+	834.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34903.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0.0	1.5	5.5	0.5	14.5	1.0
Merged-chr4-122859257-4	chr4	122858762	122859762	+	834.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008917)	TTS (NM_008917)	23035.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	10.5	14.0	20.5	12.0	36.0	8.5
Merged-chr8-109853622-3	chr8	109853125	109854125	+	834.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009677, exon 18 of 24)	exon (NM_009677, exon 18 of 24)	14313.0	NR_028532	100217432.0		NR_028532		Snord71	MBII-239	small nucleolar RNA, C/D box 71	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-41484348-3	chr12	41483833	41484833	+	834.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271708, intron 1 of 2)	intron (NM_001271708, intron 1 of 2)	1724.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132330909-3	chr4	132330355	132331355	+	834.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-1317.0	NM_027925	71787.0	Mm.239183	NM_027925	ENSMUSG00000028898	Trnau1ap	1110007F05Rik|AA387999|Secp43|Trspap1|WI1-2643G14.2	tRNA selenocysteine 1 associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-85455353-3	chr16	85454803	85455803	+	834.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_144853)	TTS (NM_144853)	95070.0	NM_144853	224405.0	Mm.213203	NM_144853	ENSMUSG00000041134	Cyyr1	-	cysteine and tyrosine-rich protein 1	protein-coding	1.0	0.0	5.0	0.5	3.0	1.5
Merged-chr14-120293234-3	chr14	120292687	120293687	+	834.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	-13265.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	22.5	12.5	13.0	19.5	4.0	18.5
Merged-chr12-81907772-3	chr12	81907251	81908251	+	834.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018814, intron 3 of 35)	intron (NM_018814, intron 3 of 35)	47721.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38712154-4	chr16	38711692	38712692	+	834.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	843.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-14361013-4	chr16	14360520	14361520	+	834.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008576)	promoter-TSS (NM_008576)	-538.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	55.0	166.0	150.0	43.5	104.5	81.0
Merged-chr2-73490621-2	chr2	73490121	73491121	+	834.083313	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-4868.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-91237038-2	chr10	91236538	91237538	+	834.083313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16419.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32352214-2	chr2	32351714	32352714	+	834.083313	f1_balb.idr|f1_c57bl6.idr	intron (NM_010065, intron 1 of 20)	intron (NM_010065, intron 1 of 20)	1115.0	NM_001301737	13429.0	Mm.44736	NM_010065	ENSMUSG00000026825	Dnm1	AI838169|Dnm|Ftfl|mKIAA4093	dynamin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-69453837-8	chr9	69453312	69454312	+	834.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007585, intron 1 of 12)	CpG	129.0	NM_007585	12306.0	Mm.238343	NM_007585	ENSMUSG00000032231	Anxa2	AW215814|Cal1h	annexin A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73509779-4	chr2	73509264	73510264	+	834.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	19723.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57398799-3	chr16	57398288	57399288	+	834.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	45511.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116619451-6	chr11	116618961	116619961	+	834.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	4791.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	3.0	21.0	20.5	21.5	47.0	22.5
Merged-chr1-59993113-1	chr1	59992613	59993613	+	834.0	f1_c57bl6.idr	intron (NM_001357296, intron 10 of 10)	MTC|LTR|ERVL-MaLR	50009.0	NM_001357296	70375.0	Mm.17834	NM_027407	ENSMUSG00000026018	Ica1l	1700030B17Rik|Als2cr15|b2b3465Clo	islet cell autoantigen 1-like	protein-coding	11.0	11.0	3.0	6.5	8.5	2.0
Merged-chr10-78159449-3	chr10	78158956	78159956	+	834.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10312.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122885629-2	chr5	122885129	122886129	+	834.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003953, intron 13 of 22)	B1_Mur3|SINE|Alu	14721.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	4.5	19.0	13.5	4.5	22.0	13.5
Merged-chr4-47322591-4	chr4	47322113	47323113	+	834.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-30609.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113903650-2	chr5	113903150	113904150	+	834.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011779, intron 1 of 10)	intron (NM_011779, intron 1 of 10)	5056.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-34733660-4	chr4	34733143	34734143	+	834.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3437.0	NM_001347062	69329.0	Mm.389548	NM_027041	ENSMUSG00000028294	Cfap206	1700003M02Rik|AU024269	cilia and flagella associated protein 206	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106824684-2	chr11	106824184	106825184	+	834.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_025481, exon 17 of 19)	exon (NM_025481, exon 17 of 19)	35432.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115478781-2	chr11	115478281	115479281	+	834.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177778, intron 2 of 2)	intron (NM_177778, intron 2 of 2)	3114.0	NM_001361594	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132171174-2	chr4	132170674	132171674	+	834.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26688.0	NM_013622	18386.0	Mm.5243	NM_013622	ENSMUSG00000050511	Oprd1	DOR|DOR-1|Nbor|mDOR	opioid receptor, delta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32508327-1	chr9	32507827	32508827	+	834.0	f0_balb.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	33125.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-46852428-3	chr1	46851936	46852936	+	834.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356416, intron 1 of 10)	intron (NM_001356416, intron 1 of 10)	1182.0	NM_001356416	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-115248068-3	chr10	115247617	115248617	+	834.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025706, intron 1 of 16)	MTD|LTR|ERVL-MaLR	3376.0	NM_025706	66687.0	Mm.22252	NM_025706	ENSMUSG00000020130	Tbc1d15	4432405K22Rik|AU022358|AU023730|AW557774|Ly6dl|Rab7-GAP	TBC1 domain family, member 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127615806-3	chr10	127615259	127616259	+	834.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 1 of 88)	intron (NM_008512, intron 1 of 88)	5389.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	6.5	10.0	6.0	3.5	13.0	6.5
Merged-chr5-124023848-1	chr5	124023348	124024348	+	834.0	f1_balb.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	8412.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	4.0	16.0	29.5	15.5	20.5	19.5
Merged-chr14-79291157-2	chr14	79290655	79291655	+	834.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025427, intron 3 of 4)	intron (NM_025427, intron 3 of 4)	10480.0	NM_025427	66214.0	Mm.29811	NM_025427	ENSMUSG00000022018	Rgcc	1190002H23Rik|Rgc-32|Rgc32	regulator of cell cycle	protein-coding	8.0	1.0	13.0	0.0	22.5	4.0
Merged-chr17-34285192-1	chr17	34284692	34285692	+	834.0	f1_c57bl6.idr	intron (NM_010378, intron 1 of 4)	intron (NM_010378, intron 1 of 4)	2579.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	33.0	142.0	42.5	42.5	117.5	29.5
Merged-chr18-80477287-2	chr18	80476787	80477787	+	834.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa-int|LTR|ERVL-MaLR	-7620.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-83640084-1	chr10	83639584	83640584	+	834.0	f0_balb.idr	intron (NM_145220, intron 2 of 20)	intron (NM_145220, intron 2 of 20)	8580.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-36861094-2	chr3	36860594	36861594	+	834.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-2012.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-84054045-2	chr6	84053545	84054545	+	834.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 3 of 54)	intron (NM_001077694, intron 3 of 54)	34659.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-72096543-2	chr7	72096043	72097043	+	834.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024703, intron 20 of 22)	RMER1B|Other|Other	-134525.0	NR_126483	102640608.0	Mm.399138	NR_126483	ENSMUSG00000108480	Gm36633	-	predicted gene, 36633	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85375651-2	chr12	85375151	85376151	+	834.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026775)	promoter-TSS (NM_026775)	-934.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80047658-2	chr12	80047158	80048158	+	834.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	65355.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10539710-2	chr16	10539210	10540210	+	834.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021428, intron 1 of 1)	intron (NM_021428, intron 1 of 1)	3344.0	NM_021428	58239.0	Mm.353006	NM_021428	ENSMUSG00000038055	Dexi	1810029J14Rik|AI836170|AW413143|D16Bwg0586e|Myle	dexamethasone-induced transcript	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42128180-2	chr19	42127680	42128680	+	834.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027106, intron 1 of 2)	MIR|SINE|MIR	813.0	NM_027106	69534.0	Mm.30060	NM_027106	ENSMUSG00000018821	Avpi1	2310008N12Rik|AA410041|VIT32|esu|mVIT32	arginine vasopressin-induced 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156461280-2	chr1	156460844	156461844	+	834.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 2 of 15)	intron (NM_009230, intron 2 of 15)	12984.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	10.5	31.0	26.5	45.5	42.5	58.5
Merged-chr15-76927861-2	chr15	76927361	76928361	+	834.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2413.0	NM_001168276	239546.0	Mm.183650	NM_172817	ENSMUSG00000054967	Zfp647	6030449J21|Es492|Znf250	zinc finger protein 647	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167710309-2	chr2	167709809	167710809	+	834.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19132.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73058190-2	chr15	73057690	73058690	+	834.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_180662, exon 2 of 22)	exon (NM_180662, exon 2 of 22)	-2378.0	NM_029640	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	1.0	0.0	5.5	0.0	0.0	7.0
Merged-chr2-25534389-2	chr2	25533889	25534889	+	834.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009422, intron 4 of 10)	intron (NM_009422, intron 4 of 10)	12551.0	NM_001290413	22030.0	Mm.3399	NM_009422	ENSMUSG00000026942	Traf2	AI325259	TNF receptor-associated factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18800115-2	chr2	18799615	18800615	+	834.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131254, exon 1 of 1)	non-coding (NR_131254, exon 1 of 1)	1703.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44129184-2	chr9	44128696	44129696	+	834.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152189, intron 1 of 1)	RMER4A|LTR|ERVK	5289.0	NR_152189	100038560.0	Mm.429758	NR_152189		Gm10687	-	predicted gene 10687	ncRNA	0.0	3.0	1.5	0.0	2.5	2.0
Merged-chr13-99344041-4	chr13	99343511	99344511	+	834.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173757)	promoter-TSS (NM_173757)	667.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	0.0	0.0	5.0	0.0	0.5	0.0
Merged-chr8-11067662-3	chr8	11067170	11068170	+	834.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59240.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104991416-2	chr3	104990916	104991916	+	834.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29707.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102690245-6	chr12	102689800	102690800	+	833.990723	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	-5280.0	NR_035457	100316812.0		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115100678-4	chr11	115100187	115101187	+	833.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163753, intron 1 of 8)	intron (NM_001163753, intron 1 of 8)	9256.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41329108-3	chr19	41328654	41329654	+	833.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 4 of 16)	intron (NM_031376, intron 4 of 16)	55916.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	2.0	9.0	14.0	16.5	13.0	12.5
Merged-chr8-107066331-3	chr8	107065858	107066858	+	833.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025458)	promoter-TSS (NM_025458)	-714.0	NM_025458	66269.0	Mm.23032	NM_025458	ENSMUSG00000031919	Tmed6	1810015P03Rik|1810018I24Rik	transmembrane p24 trafficking protein 6	protein-coding	0.5	2.0	0.0	0.5	2.0	0.0
Merged-chr11-54879102-3	chr11	54878575	54879575	+	833.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	12692.0	NM_008248	15254.0	Mm.425	NM_008248	ENSMUSG00000020267	Hint1	AA673479|Hint|Ipk1|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88255886-4	chr17	88255352	88256352	+	833.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	130340.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139201777-5	chr4	139201284	139202284	+	833.919983	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	7673.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	73.0	203.0	146.5	37.5	144.0	79.5
Merged-chr12-80877866-4	chr12	80877388	80878388	+	833.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178682, exon 6 of 6)	3' UTR (NM_178682, exon 6 of 6)	46559.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106528210-4	chr8	106527701	106528701	+	833.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007665, intron 2 of 15)	B4|SINE|B4	17349.0	NM_001037809	12560.0	Mm.4658	NM_007665	ENSMUSG00000061048	Cdh3	AI385538|Cadp|Cdhp|P-cadherin|Pcad	cadherin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104376945-4	chr8	104376403	104377403	+	833.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153582, intron 1 of 3)	L1MC|LINE|L1	18904.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166200879-2	chr2	166200379	166201379	+	833.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45196.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.5	4.5	0.0	0.5	4.5	0.0
Merged-chr12-98278458-4	chr12	98277953	98278953	+	833.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9818.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135709227-4	chr4	135708669	135709669	+	833.895874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_174851)	TTS (NM_174851)	-18990.0	NM_178257	230828.0	Mm.261647	NM_178257	ENSMUSG00000037157	Il22ra1	9130219A07Rik|IL-22R|Il22r	interleukin 22 receptor, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-63943474-3	chr5	63942976	63943976	+	833.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145923, intron 1 of 6)	MER44B|DNA|TcMar-Tigger	25421.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	0.0	0.0	0.0	1.0	2.5	0.0
Merged-chr12-113026846-3	chr12	113026349	113027349	+	833.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081170, intron 1 of 23)	intron (NM_001081170, intron 1 of 23)	12341.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88266557-3	chr1	88266062	88267062	+	833.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198652, exon 8 of 8)	exon (NM_198652, exon 8 of 8)	2846.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-85574650-4	chr3	85574136	85575136	+	833.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144896, intron 1 of 12)	intron (NM_144896, intron 1 of 12)	507.0	NM_144896	229487.0	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	7.5	10.5	7.0	5.5	3.5	5.5
Merged-chr11-4536126-4	chr11	4535627	4536627	+	833.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028860, intron 1 of 17)	L1MB8|LINE|L1	58688.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60175341-3	chr2	60174844	60175844	+	833.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34592.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165056611-5	chr2	165056168	165057168	+	833.862854	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027852, intron 1 of 7)	intron (NR_027852, intron 1 of 7)	1032.0	NM_011611	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	6.0	23.0	2.5	0.0	0.5	1.5
Merged-chr10-91122861-2	chr10	91122361	91123361	+	833.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133668, intron 2 of 7)	intron (NM_133668, intron 2 of 7)	1102.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-54747946-2	chr1	54747446	54748446	+	833.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 9 of 27)	intron (NM_001081433, intron 9 of 27)	178441.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	8.5	4.0	0.0	8.5	4.0	0.0
Merged-chr1-64530096-3	chr1	64529560	64530560	+	833.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2744.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-144932947-3	chr7	144932461	144933461	+	833.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007631, intron 4 of 4)	intron (NM_007631, intron 4 of 4)	6964.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	5.0	18.0	15.5	1.5	8.0	7.0
Merged-chr7-49146847-2	chr7	49146347	49147347	+	833.833313	f1_balb.idr|f1_c57bl6.idr	intron (NR_154465, intron 3 of 3)	Lx7|LINE|L1	15311.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152424940-4	chr1	152424459	152425459	+	833.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177756, intron 1 of 11)	intron (NM_177756, intron 1 of 11)	25092.0	NM_177756	269132.0	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-105759118-3	chr9	105758611	105759611	+	833.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102607, intron 13 of 36)	intron (NM_001102607, intron 13 of 36)	50537.0	NM_172927	245026.0	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding	0.0	3.0	1.0	12.0	9.5	14.5
Merged-chr18-25546041-3	chr18	25545560	25546560	+	833.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362322, intron 2 of 12)	intron (NM_001362322, intron 2 of 12)	133688.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-96126825-3	chr16	96126319	96127319	+	833.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008251, intron 4 of 5)	B3A|SINE|B2	906.0	NM_008251	15312.0	Mm.2756	NM_008251	ENSMUSG00000040681	Hmgn1	HMG-14|Hmg14	high mobility group nucleosomal binding domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-99200645-2	chr14	99200145	99201145	+	833.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_029320, intron 14 of 17)	intron (NM_029320, intron 14 of 17)	-98046.0	NM_009769	12224.0	Mm.30262	NM_009769	ENSMUSG00000005148	Klf5	4930520J07Rik|Bteb2|CKLF|IKLF	Kruppel-like factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12264915-4	chr13	12264411	12265411	+	833.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6798.0	NM_001081128	238505.0	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-72866401-2	chr15	72865885	72866885	+	833.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164642, intron 16 of 16)	intron (NM_001164642, intron 16 of 16)	-56061.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0.0	0.0	0.0	6.0	1.0	2.5
Merged-chr13-41021208-2	chr13	41020708	41021708	+	833.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360770, intron 4 of 4)	intron (NM_001360770, intron 4 of 4)	4958.0	NM_001360770	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66387704-4	chr7	66387176	66388176	+	833.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 1 of 33)	CpG	665.0	NM_146191	233328.0	Mm.33284	NM_146191	ENSMUSG00000015133	Lrrk1	AW319595|C230002E15Rik|D130026O16Rik|mKIAA1790	leucine-rich repeat kinase 1	protein-coding	42.0	187.0	176.5	82.5	198.0	121.5
Merged-chr6-134997083-4	chr6	134996564	134997564	+	833.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14548.0	NM_026360	67755.0	Mm.166524	NM_026360	ENSMUSG00000030204	Ddx47	4930588A18Rik|C77285	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	protein-coding	2.0	5.0	6.0	0.0	0.0	1.5
Merged-chr10-4333547-3	chr10	4333041	4334041	+	833.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031185, intron 2 of 3)	intron (NM_031185, intron 2 of 3)	53934.0	NM_001359811	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26948646-5	chr17	26948141	26949141	+	833.716675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037244)	promoter-TSS (NR_037244)	-522.0	NR_037244	100526534.0		NR_037244	ENSMUSG00000093118	Mir3083	mir-3083|mmu-mir-3083	microRNA 3083	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-15201277-5	chr19	15200734	15201734	+	833.700012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-603051.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115273989-3	chr5	115273461	115274461	+	833.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-1066.0	NM_001302449	50849.0	Mm.30051	NM_016698	ENSMUSG00000041740	Rnf10	AA675014|RIE2|mKIAA0262	ring finger protein 10	protein-coding	6.0	17.0	6.0	3.5	16.0	21.0
Merged-chr13-97203817-4	chr13	97203301	97204301	+	833.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5444.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32638692-3	chr16	32638189	32639189	+	833.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5954.0	NM_001110147	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0.0	0.0	0.0	0.0	5.0	0.0
Merged-chr13-117152887-3	chr13	117152405	117153405	+	833.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	22880.0	NR_046023	623312.0	Mm.131279	NR_046023	ENSMUSG00000114792	Gm6416	-	predicted gene 6416	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73117132-4	chr14	73116638	73117638	+	833.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25372.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151307258-4	chr1	151306761	151307761	+	833.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37225.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23823066-2	chr17	23822566	23823566	+	833.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_039586)	promoter-TSS (NR_039586)	-225.0	NR_039586	100628593.0		NR_039586	ENSMUSG00000092981	Mir5125	mmu-mir-5125|mu-mir-5125	microRNA 5125	ncRNA	0.0	0.0	3.0	0.0	4.0	0.0
Merged-chr11-44617121-4	chr11	44616564	44617564	+	833.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1036.0	NM_001290711	13591.0	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-88012817-2	chr11	88012312	88013312	+	833.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-14514.0	NM_001168471	68097.0	Mm.246436	NM_026556	ENSMUSG00000020483	Dynll2	1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2	dynein light chain LC8-type 2	protein-coding	4.0	1.5	0.0	6.5	2.5	3.5
Merged-chr3-107288648-2	chr3	107288148	107289148	+	833.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER68|LTR|ERVL	-2582.0	NM_001310705	229699.0	Mm.38384	NM_146136	ENSMUSG00000027896	Slc16a4	AW146050|MCT 5	solute carrier family 16 (monocarboxylic acid transporters), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70110114-4	chr12	70109621	70110621	+	833.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286079, intron 1 of 28)	intron (NM_001286079, intron 1 of 28)	1508.0	NR_104398	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	1.0	6.5	3.0	9.5	1.0	2.0
Merged-chr3-109747792-4	chr3	109747294	109748294	+	833.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	173787.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	2.5	8.0	0.5	1.5	1.0	0.5
Merged-chr1-156571674-4	chr1	156571165	156572165	+	833.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	12878.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	12.0	53.5	12.0	1.5	17.0	5.0
Merged-chr7-28214342-4	chr7	28213847	28214847	+	833.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34031.0	NM_001271370	13549.0	Mm.57249	NM_010092	ENSMUSG00000002409	Dyrk1b	Mirk	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-63668984-4	chr1	63668500	63669500	+	833.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081658, intron 6 of 14)	MTD|LTR|ERVL-MaLR	17927.0	NM_001081658	241073.0	Mm.297680	NM_001081658	ENSMUSG00000069085	Dytn	Gm215	dystrotelin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32754098-4	chr5	32753599	32754599	+	833.604126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177298, intron 3 of 7)	intron (NM_177298, intron 3 of 7)	-7757.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	9.5	29.0	8.0	10.0	19.0	23.0
Merged-chr12-34663926-2	chr12	34663432	34664432	+	833.583374	f0_c57.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-135043.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	17.5	51.0	50.5	8.0	10.0	14.0
Merged-chr13-9152478-4	chr13	9151986	9152986	+	833.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 11 of 17)	intron (NM_172585, intron 11 of 17)	58605.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-115314507-4	chr10	115314014	115315014	+	833.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024454, intron 1 of 6)	intron (NM_024454, intron 1 of 6)	1077.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44009398-3	chr16	44008936	44009936	+	833.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001172107, exon 3 of 13)	exon (NM_001172107, exon 3 of 13)	-4416.0	NR_037302	100499519.0		NR_037302	ENSMUSG00000093912	Mir3470b	mmu-mir-3470b	microRNA 3470b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-16466578-4	chr5	16466168	16467168	+	833.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-86827.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84803867-4	chr12	84803364	84804364	+	833.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013589, intron 16 of 34)	intron (NM_013589, intron 16 of 34)	30594.0	NM_028863	74316.0	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34685865-4	chr17	34685369	34686369	+	833.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_031176, exon 8 of 33)	exon (NM_031176, exon 8 of 33)	15334.0	NM_031176	81877.0	Mm.290527	NM_031176	ENSMUSG00000033327	Tnxb	Tn-mhc|Tnx	tenascin XB	protein-coding	2.0	6.5	0.0	5.5	1.0	5.0
Merged-chr2-158194970-2	chr2	158194470	158195470	+	833.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177657)	TTS (NM_177657)	2962.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86946218-2	chr12	86945718	86946718	+	833.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289430)	promoter-TSS (NM_001289430)	-823.0	NM_001289431	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152582504-2	chr1	152582004	152583004	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	42713.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51357857-2	chr3	51357357	51358357	+	833.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-17213.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97410954-2	chr6	97410454	97411454	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	48332.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112993870-2	chr13	112993370	112994370	+	833.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037914)	promoter-TSS (NM_001037914)	2.0	NM_001037914	622408.0	Mm.360976	NM_001037914	ENSMUSG00000074651	Mcidas	EG622408|Gm6320|Idas|Mci|Mcin	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172337063-2	chr1	172336575	172337575	+	833.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4135.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	12.5	6.0	7.0	5.0	3.0	9.5
Merged-chr11-53797740-2	chr11	53797240	53798240	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	27267.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10200544-2	chr17	10200044	10201044	+	833.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	118817.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88223753-2	chr1	88223253	88224253	+	833.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-3267.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6624105-2	chr11	6623605	6624605	+	833.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001130457, exon 3 of 13)	exon (NM_001130457, exon 3 of 13)	1962.0	NM_001130457	21379.0	Mm.247761	NM_134011	ENSMUSG00000000384	Tbrg4	2310042P22Rik|AA120735|AA408001|AI527316|Cpr2|R74877|Tb-12|mKIAA0948	transforming growth factor beta regulated gene 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90056674-3	chr9	90056201	90057201	+	833.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312649, intron 1 of 10)	intron (NM_001312649, intron 1 of 10)	2434.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	2.0	18.5	9.5	9.0	3.0	6.0
Merged-chr8-80459557-2	chr8	80459057	80460057	+	833.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34488.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52239802-2	chr13	52239302	52240302	+	833.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	143061.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-48895643-2	chr7	48895143	48896143	+	833.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14047.0	NM_001360812	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-37239420-2	chr12	37238920	37239920	+	833.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2219.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	8.5	1.0	7.0	0.0	0.0	0.5
Merged-chr5-88632898-2	chr5	88632398	88633398	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 10 of 13)	B3|SINE|B2	42682.0	NM_001098476	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57279811-4	chr17	57279264	57280264	+	833.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 1 of 25)	CT-rich|Low_complexity|Low_complexity	664.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	15.0	51.0	26.5	14.0	45.5	28.0
Merged-chr17-47792672-4	chr17	47792181	47793181	+	833.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001161723)	TTS (NM_001161723)	6937.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	1.5	4.0	6.5	1.0	12.5	19.0
Merged-chr10-63025186-2	chr10	63024686	63025686	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026085, intron 1 of 9)	intron (NM_026085, intron 1 of 9)	674.0	NM_026085	67307.0	Mm.368563	NM_026085	ENSMUSG00000020072	Pbld2	3110049J23Rik|Mawbp	phenazine biosynthesis-like protein domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32275541-3	chr17	32275053	32276053	+	833.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286630, intron 1 of 19)	intron (NM_001286630, intron 1 of 19)	8570.0	NM_198094	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120899944-2	chr6	120899444	120900444	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007544, intron 3 of 5)	intron (NM_007544, intron 3 of 5)	16880.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	0.0	2.0	3.0	0.0	10.0	0.0
Merged-chr1-8780487-2	chr1	8779987	8780987	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027671, intron 6 of 20)	L1_Mus4|LINE|L1	519390.0	NM_001290393	71096.0	Mm.336395	NM_027671	ENSMUSG00000025909	Sntg1	4933426D16Rik|G1SYN|SYN4	syntrophin, gamma 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-9335879-2	chr11	9335379	9336379	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 27 of 61)	intron (NM_178259, intron 27 of 61)	143937.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	9.5	39.0	28.5	11.0	36.5	22.5
Merged-chr10-60408339-2	chr10	60407839	60408839	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 26 of 68)	intron (NM_001252635, intron 26 of 68)	8613.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103179418-2	chr15	103178918	103179918	+	833.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16134.0	NM_027885	71726.0	Mm.254820	NM_027885	ENSMUSG00000036061	Smug1	1200013B09Rik|A930006H09Rik|C85220	single-strand selective monofunctional uracil DNA glycosylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40831990-2	chr19	40831490	40832490	+	833.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172839, exon 2 of 6)	5' UTR (NM_172839, exon 2 of 6)	711.0	NM_172839	240665.0	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding	3.5	8.5	0.0	2.0	6.0	8.0
Merged-chr11-117235224-2	chr11	117234724	117235724	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 2 of 11)	intron (NM_001113486, intron 2 of 11)	-31022.0	NM_001113487	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-101532710-2	chr6	101532210	101533210	+	833.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-154813.0	NM_018884	55983.0	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88384465-2	chr6	88383965	88384965	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023060, intron 1 of 6)	intron (NM_023060, intron 1 of 6)	62074.0	NM_023060	65967.0	Mm.333237	NM_023060	ENSMUSG00000033216	Eefsec	Selb|mSelB|sec	eukaryotic elongation factor, selenocysteine-tRNA-specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-121245358-2	chr6	121244858	121245858	+	833.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011909)	promoter-TSS (NM_011909)	-548.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	11.5	29.5	25.0	8.0	41.0	24.5
Merged-chr11-118275929-2	chr11	118275429	118276429	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033528, intron 9 of 20)	intron (NM_001033528, intron 9 of 20)	14315.0	NM_001033528	72344.0	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32982888-4	chr2	32982353	32983353	+	833.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019488)	promoter-TSS (NM_019488)	-770.0	NR_151460	56017.0	Mm.305754	NM_019488	ENSMUSG00000026791	Slc2a8	D2Ertd44e|GLUT8|GlutX1	solute carrier family 2, (facilitated glucose transporter), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101956064-2	chr5	101955564	101956564	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 7 of 66)	ID_B1|SINE|B4	113857.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	1.5	1.0	0.0	0.0	0.0
Merged-chr11-97986475-4	chr11	97985962	97986962	+	833.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028199)	promoter-TSS (NM_028199)	-16.0	NM_001163608	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59821447-2	chr13	59820947	59821947	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153538, intron 2 of 27)	intron (NM_153538, intron 2 of 27)	1700.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	9.5	23.5	4.5	8.0	14.0	2.5
Merged-chr17-81065810-2	chr17	81065310	81066310	+	833.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028138)	promoter-TSS (NM_028138)	-725.0	NM_028138	72167.0	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145250713-2	chr4	145250213	145251213	+	833.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3843.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9599870-2	chr13	9599370	9600370	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 17 of 36)	intron (NM_001081426, intron 17 of 36)	163940.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-42988309-2	chr4	42987809	42988809	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009503, intron 7 of 16)	B4|SINE|B4	12198.0	NM_009503	269523.0	Mm.245976	NM_009503	ENSMUSG00000028452	Vcp	3110001E05|CDC48|p97|p97/VCP	valosin containing protein	protein-coding	2.5	12.0	0.5	2.5	12.0	0.5
Merged-chr12-76536361-2	chr12	76535861	76536861	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	2801.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110783805-4	chr9	110783285	110784285	+	833.483337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14400.0	NM_153099	235628.0	Mm.292285	NM_153099	ENSMUSG00000044664	Prss42	Tessp2	protease, serine 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-41024836-3	chr8	41024338	41025338	+	833.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_015457)	TTS (NR_015457)	7370.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	49.5	122.5	63.0	16.0	38.0	30.0
Merged-chr7-134669789-4	chr7	134669386	134670386	+	833.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033420)	promoter-TSS (NM_001033420)	-801.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	6.0	4.5	3.5	8.0	10.0	5.0
Merged-chr7-4145991-4	chr7	4145474	4146474	+	833.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172736, exon 15 of 15)	3' UTR (NM_172736, exon 15 of 15)	3898.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142598105-4	chr3	142597592	142598592	+	833.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010259, intron 1 of 10)	intron (NM_010259, intron 1 of 10)	3245.0	NM_010259	14468.0	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	0.0	4.5	3.5	0.0	0.0	0.0
Merged-chr18-34502657-3	chr18	34502160	34503160	+	833.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146084, intron 1 of 20)	intron (NM_146084, intron 1 of 20)	4163.0	NM_146084	225358.0	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	21.0	63.5	34.0	13.0	63.0	34.5
Merged-chr6-134087842-3	chr6	134087351	134088351	+	833.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	52151.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.0	9.5	5.5	0.0	3.5	3.0
Merged-chr11-58917098-3	chr11	58916598	58917598	+	833.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138678)	promoter-TSS (NM_138678)	-959.0	NM_138678	192194.0	Mm.22540	NM_138678	ENSMUSG00000020490	Btnl10	BUTR-1|Butr1	butyrophilin-like 10	protein-coding	1.5	0.0	2.0	0.0	2.5	0.0
Merged-chr6-134067166-3	chr6	134066671	134067671	+	833.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	MTD|LTR|ERVL-MaLR	31471.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-67021162-4	chr11	67020669	67021669	+	833.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3985.0	NM_001291042	338369.0	Mm.128138	NM_177392	ENSMUSG00000050270	Tmem220	-	transmembrane protein 220	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53485434-3	chr15	53484960	53485960	+	833.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	128819.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91414230-5	chr1	91413766	91414766	+	833.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360900)	promoter-TSS (NM_001360900)	-228.0	NM_001360900	55927.0	Mm.280029	NM_019479	ENSMUSG00000067071	Hes6	AI326893|bHLHb41	hairy and enhancer of split 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-12427762-3	chr4	12427279	12428279	+	833.366638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-255764.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81343254-6	chr10	81342706	81343706	+	833.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148951)	promoter-TSS (NM_148951)	60.0	NM_148951	209047.0	Mm.218755	NM_148951	ENSMUSG00000034872	Gipc3	Ahl5|Rgs19ip3	GIPC PDZ domain containing family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-58445671-2	chr10	58445171	58446171	+	833.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1181.0	NM_011240	19386.0	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27676541-2	chr15	27676041	27677041	+	833.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	5001.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128770371-2	chr2	128769831	128770831	+	833.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 8 of 18)	intron (NM_008587, intron 8 of 18)	-47972.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	18.5	42.0	23.0	29.0	55.0	15.0
Merged-chr1-153847085-4	chr1	153846600	153847600	+	833.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2959.0	NM_001243223	240816.0	Mm.329340	NM_001243223	ENSMUSG00000042641	Rgsl1	4930415K13Rik|Gm202|Rgsl2	regulator of G-protein signaling like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-112079103-3	chr9	112078622	112079622	+	833.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362012, intron 18 of 19)	intron (NM_001362012, intron 18 of 19)	39589.0	NR_029823	723815.0		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75600876-1	chr18	75600376	75601376	+	833.333313	f1_c57bl6.idr	intron (NM_201354, intron 6 of 11)	intron (NM_201354, intron 6 of 11)	86231.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	3.5	7.0	5.0	8.0	3.5	5.0
Merged-chr10-77904918-2	chr10	77904418	77905418	+	833.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC|LINE|L1	-2382.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-63811026-2	chr5	63810526	63811526	+	833.333313	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177006)	TTS (NM_177006)	-1469.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-59342669-4	chr3	59342163	59343163	+	833.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162884, intron 1 of 6)	L1_Mm|LINE|L1	1593.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61602416-3	chr10	61601864	61602864	+	833.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177511, intron 1 of 3)	intron (NM_001177511, intron 1 of 3)	6880.0	NM_001177511	237362.0	Mm.131297	NM_001177511	ENSMUSG00000020090	Npffr1	Gm236|Gpr147|NPFF1|NPFF1R|OT7T022	neuropeptide FF receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-142699074-3	chr2	142698578	142699578	+	833.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 23 of 26)	intron (NM_001355123, intron 23 of 26)	202386.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-119066153-3	chr10	119065657	119066657	+	833.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15658.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0.5	6.5	1.5	0.0	3.5	0.0
Merged-chr4-128769677-5	chr4	128769216	128770216	+	833.328552	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001009819)	TTS (NM_001009819)	10458.0	NM_001009819	215493.0	Mm.300900	NM_001009819	ENSMUSG00000028794	A3galt2	Gm433|iGb3|iGb3S	alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase)	protein-coding	0.0	2.0	0.0	2.5	0.0	2.0
Merged-chr1-85841058-5	chr1	85840559	85841559	+	833.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355046, intron 5 of 9)	ID4|SINE|ID	47042.0	NM_001355047	12283.0	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24849377-3	chr17	24848911	24849911	+	833.299988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023480, exon 1 of 1)	3' UTR (NM_023480, exon 1 of 1)	891.0	NM_023480	68636.0	Mm.347964	NM_023480	ENSMUSG00000045316	Fahd1	1110025H10Rik|AV002085	fumarylacetoacetate hydrolase domain containing 1	protein-coding	38.0	48.0	55.0	34.5	92.5	55.5
Merged-chr10-55098495-4	chr10	55097989	55098989	+	833.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-1008428.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6628741-4	chr11	6628231	6629231	+	833.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2664.0	NM_134011	21379.0	Mm.247761	NM_134011	ENSMUSG00000000384	Tbrg4	2310042P22Rik|AA120735|AA408001|AI527316|Cpr2|R74877|Tb-12|mKIAA0948	transforming growth factor beta regulated gene 4	protein-coding	1.0	11.0	7.5	0.0	5.5	13.0
Merged-chr1-140171804-2	chr1	140171304	140172304	+	833.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009888, intron 1 of 21)	intron (NM_009888, intron 1 of 21)	11607.0	NM_009888	12628.0	Mm.8655	NM_009888	ENSMUSG00000026365	Cfh	Mud-1|NOM|Sas-1|Sas1	complement component factor h	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-63332820-2	chr13	63332320	63333320	+	833.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007985, intron 8 of 14)	intron (NM_007985, intron 8 of 14)	-31537.0	NR_037235	100526474.0		NR_037235	ENSMUSG00000092741	Mir3074-1	mmu-mir-3074-1	microRNA 3074-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-18779794-4	chr13	18779282	18780282	+	833.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 4 of 28)	MTC|LTR|ERVL-MaLR	62490.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	1.0	9.0	9.5	4.5	3.0	21.5
Merged-chr16-49902966-4	chr16	49902467	49903467	+	833.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 8 of 9)	Lx9|LINE|L1	47313.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34504872-2	chr18	34504372	34505372	+	833.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_146084, intron 1 of 20)	intron (NM_146084, intron 1 of 20)	1951.0	NM_146084	225358.0	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	23.0	29.0	18.5	13.5	27.0	18.0
Merged-chr19-46588094-4	chr19	46587658	46588658	+	833.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053196, intron 5 of 11)	intron (NM_053196, intron 5 of 11)	-10948.0	NM_001177812	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	0.0	16.5	4.5	8.0	4.5	9.0
Merged-chr12-17012204-2	chr12	17011702	17012702	+	833.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001201332)	promoter-TSS (NM_001201332)	-475.0	NM_001201333	73667.0	Mm.159048	NM_001201332	ENSMUSG00000071398	2410004P03Rik	-	RIKEN cDNA 2410004P03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-75541704-3	chr9	75541183	75542183	+	833.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357828, intron 1 of 10)	intron (NM_001357828, intron 1 of 10)	17974.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	2.5	4.5	4.5	2.5	1.5	1.0
Merged-chr16-23592685-3	chr16	23592203	23593203	+	833.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17216.0	NM_023386	67775.0	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103007629-3	chr2	103007058	103008058	+	833.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	65955.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	14.5	85.0	59.0	51.5	101.0	55.0
Merged-chr16-91811488-2	chr16	91810988	91811988	+	833.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 8 of 15)	intron (NM_001110276, intron 8 of 15)	82117.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86583729-2	chr11	86583229	86584229	+	833.166687	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029738)	TTS (NR_029738)	429.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63495486-2	chr4	63494986	63495986	+	833.166626	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028640, exon 1 of 12)	5' UTR (NM_028640, exon 1 of 12)	505.0	NM_001008793	73750.0	Mm.300397	NM_028640	ENSMUSG00000039137	Whrn	1110035G07Rik|AW122018|AW742671|C430046P22Rik|Dfnb31|Ush2d|wi	whirlin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156460462-2	chr1	156459962	156460962	+	833.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 2 of 15)	PB1D7|SINE|Alu	13866.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	40.5	68.5	62.0	20.0	103.5	95.5
Merged-chr12-5136425-2	chr12	5135925	5136925	+	833.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164493, intron 5 of 13)	intron (NM_001164493, intron 5 of 13)	219072.0	NM_001362349	320817.0	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117121177-2	chr5	117120677	117121677	+	833.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199685, intron 1 of 20)	intron (NM_001199685, intron 1 of 20)	1048.0	NM_001199685	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	0.5	1.0	8.5	0.0	2.0	6.0
Merged-chr2-133430783-4	chr2	133430289	133431289	+	833.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121370.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89212578-2	chr3	89212078	89213078	+	833.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357367, intron 2 of 6)	intron (NM_001357367, intron 2 of 6)	1757.0	NM_013604	17827.0	Mm.280943	NM_013604	ENSMUSG00000064068	Mtx1	Gcap6|Mtx	metaxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71632689-2	chr8	71632189	71633189	+	833.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 39 of 41)	intron (NM_001029873, intron 39 of 41)	-1583.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	37.5	20.0	11.0	16.0	49.5	22.5
Merged-chr6-97804631-4	chr6	97804137	97805137	+	833.145813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2421.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	10.0	30.0	16.0	2.5	24.5	11.0
Merged-chr16-55477003-4	chr16	55476516	55477516	+	833.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17715.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24569870-4	chr16	24569367	24570367	+	833.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 4 of 12)	intron (NM_178665, intron 4 of 12)	40553.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73774155-3	chr13	73773636	73774636	+	833.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 1 of 24)	intron (NM_001360694, intron 1 of 24)	10439.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-84026318-4	chr6	84025779	84026779	+	833.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310152, intron 1 of 53)	intron (NM_001310152, intron 1 of 53)	6893.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59822328-3	chr15	59821835	59822835	+	833.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27376.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.0	20.0	29.0	0.0	12.5	12.0
Merged-chr15-72874453-3	chr15	72873919	72874919	+	833.044434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164642, intron 16 of 16)	intron (NM_001164642, intron 16 of 16)	-64095.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	4.0	40.0	12.5	2.5	11.0	8.0
Merged-chr1-50805027-4	chr1	50804585	50805585	+	833.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122438.0	NM_019790	56363.0	Mm.245154	NM_019790	ENSMUSG00000026109	Tmeff2	4832418D20Rik|7630402F16Rik|TR-2	transmembrane protein with EGF-like and two follistatin-like domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120191104-3	chr6	120190602	120191602	+	833.022217	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-2721.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7340153-2	chr19	7339653	7340653	+	833.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080388, intron 1 of 16)	intron (NM_001080388, intron 1 of 16)	1707.0	NM_001080389	13728.0	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-19850820-3	chr4	19850214	19851214	+	833.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C2|LTR|ERVK	31987.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	13.0	11.0	1.0	5.5	4.5	0.5
Merged-chr7-30362149-2	chr7	30361649	30362649	+	833.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175478, exon 1 of 3)	5' UTR (NM_175478, exon 1 of 3)	623.0	NM_175478	233067.0	Mm.23157	NM_175478	ENSMUSG00000036957	Lrfn3	A530045B06Rik|SALM4	leucine rich repeat and fibronectin type III domain containing 3	protein-coding	0.0	3.0	0.0	0.0	3.5	0.0
Merged-chr4-9132294-2	chr4	9131794	9132794	+	833.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-136999.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92773822-2	chr1	92773322	92774322	+	833.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-57823.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89731179-4	chr3	89730679	89731679	+	833.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146296, intron 1 of 14)	intron (NM_001146296, intron 1 of 14)	461.0	NM_019655	56417.0	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|DRADA|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-24716440-2	chr8	24715940	24716940	+	833.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001324489, intron 4 of 21)	RSINE1|SINE|B4	9412.0	NM_009619	11497.0	Mm.5168	NM_009619	ENSMUSG00000031553	Adam3	Cyrn1|Taz83|tMDC	a disintegrin and metallopeptidase domain 3 (cyritestin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-24786092-1	chr12	24785592	24786592	+	833.0	f0_balb.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-45507.0	NM_026037	67216.0	Mm.167671	NM_026037	ENSMUSG00000020646	Mboat2	2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2	membrane bound O-acyltransferase domain containing 2	protein-coding	0.0	5.0	7.5	19.0	15.5	11.5
Merged-chr7-16324382-2	chr7	16323864	16324864	+	833.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285892, intron 8 of 8)	B3|SINE|B2	14781.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0.5	0.0	1.0	0.0	0.0	0.0
Merged-chr9-57554623-2	chr9	57554123	57555123	+	833.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-1871.0	NM_025837	110119.0	Mm.247218	NM_025837	ENSMUSG00000032306	Mpi	1110002E17Rik|AI315153|Mpi-1|Mpi1	mannose phosphate isomerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8788817-3	chr4	8788321	8789321	+	833.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 2 of 36)	intron (NM_001355382, intron 2 of 36)	37497.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150239050-4	chr4	150238544	150239544	+	833.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023119, intron 1 of 11)	intron (NM_023119, intron 1 of 11)	1720.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	45.0	60.5	83.5	50.5	73.5	58.0
Merged-chr14-116371752-1	chr14	116371252	116372252	+	833.0	f1_c57bl6.idr	intron (NM_175500, intron 7 of 7)	Lx|LINE|L1	-553545.0	NM_001079844	23888.0	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	2.5	0.5	0.0	0.0	0.0	0.0
Merged-chr13-119342077-4	chr13	119341583	119342583	+	833.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308506, intron 14 of 16)	B3A|SINE|B2	66928.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55562099-2	chr14	55561599	55562599	+	833.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199009, intron 2 of 14)	MTE2b|LTR|ERVL-MaLR	1176.0	NM_001199009	28199.0	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99123426-2	chr15	99122926	99123926	+	833.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-3419.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111777418-2	chr13	111776877	111777877	+	833.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	31616.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	1.0	4.0	7.5	2.5	5.0	2.0
Merged-chr15-76247396-4	chr15	76246875	76247875	+	833.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105918)	promoter-TSS (NR_105918)	568.0	NM_023168	66168.0	Mm.41665	NM_023168	ENSMUSG00000022564	Grina	1110025J15Rik|Lag|Tmbim3	glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61608499-2	chr8	61607999	61608999	+	833.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	B1_Mur1|SINE|Alu	-17330.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	8.5	17.5	4.0	3.0	6.0	13.0
Merged-chr13-64368208-2	chr13	64367702	64368702	+	833.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009984, exon 3 of 8)	exon (NM_009984, exon 3 of 8)	2318.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	4.0	6.5	10.0	17.0	5.5	7.5
Merged-chr15-64050297-2	chr15	64049797	64050797	+	833.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	9467.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0	6.5	2.5	4.0	3.0	2.5
Merged-chr4-132565451-2	chr4	132564951	132565951	+	833.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081211, intron 1 of 1)	intron (NM_001081211, intron 1 of 1)	1384.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145245451-2	chr4	145244951	145245951	+	833.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	1419.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60771546-2	chr18	60771046	60772046	+	833.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3050.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-101959405-3	chr12	101958923	101959923	+	833.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1180.0	NM_001167914	110616.0	Mm.271914	NM_029705	ENSMUSG00000021189	Atxn3	2210008M02Rik|AI463012|AI647473|ATX3|MJD1|Mjd|Sca3|ataxin-3	ataxin 3	protein-coding	0.0	7.5	1.5	6.5	1.5	4.5
Merged-chr6-145116471-3	chr6	145115980	145116980	+	833.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281980, intron 1 of 18)	intron (NM_001281980, intron 1 of 18)	844.0	NM_001281981	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	26.0	33.5	17.5	9.0	29.0	11.5
Merged-chr14-61838128-2	chr14	61837628	61838628	+	833.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-155755.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-31086538-2	chr9	31086038	31087038	+	833.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45261.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-102666428-2	chr13	102665928	102666928	+	833.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER30|DNA|hAT-Charlie	-27119.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-72299871-1	chr7	72299371	72300371	+	833.0	f0_balb.idr	intron (NM_001024703, intron 1 of 22)	intron (NM_001024703, intron 1 of 22)	6724.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4799376-1	chr18	4798876	4799876	+	833.0	f0_balb.idr	Intergenic	MLTR14|LTR|ERV1	-13110.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-123321346-2	chr7	123320846	123321846	+	833.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 6 of 19)	intron (NM_001316713, intron 6 of 19)	48569.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61662537-2	chr8	61662037	61663037	+	833.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	-71368.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-149996878-1	chr3	149996378	149997378	+	833.0	f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	722141.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	5.0	0.0	0.0	6.0	7.0	5.0
Merged-chr16-94238797-2	chr16	94238297	94239297	+	833.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 5 of 10)	intron (NM_001360045, intron 5 of 10)	51494.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80715845-2	chr10	80715345	80716345	+	833.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007460, intron 16 of 30)	intron (NM_007460, intron 16 of 30)	13152.0	NM_027829	71564.0	Mm.35802	NM_027829	ENSMUSG00000055862	Izumo4	9030607L17Rik|AI550407	IZUMO family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46848444-6	chr11	46847997	46848997	+	832.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37698.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	37.0	34.0	51.5	25.5	33.5	66.5
Merged-chr2-23088642-4	chr2	23088116	23089116	+	832.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355638, intron 7 of 13)	intron (NM_001355638, intron 7 of 13)	19544.0	NM_001355638	74159.0	Mm.181973	NM_028793	ENSMUSG00000026781	Acbd5	1300014E15Rik	acyl-Coenzyme A binding domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116142795-4	chr11	116142310	116143310	+	832.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172571, exon 31 of 31)	3' UTR (NM_172571, exon 31 of 31)	-3942.0	NM_024177	60441.0	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	7.5	8.0	4.5	2.5	0.0	6.5
Merged-chr1-89942223-3	chr1	89941723	89942723	+	832.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11047.0	NM_010262	14472.0	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10303253-5	chr19	10302718	10303718	+	832.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	1659.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	0.0	0.0	0.5	0.0	1.0	2.5
Merged-chr6-137412176-4	chr6	137411630	137412630	+	832.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 13 of 26)	intron (NM_011216, intron 13 of 26)	1409.0	NM_001164403	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102446995-2	chr11	102446494	102447494	+	832.916687	f1_balb.idr|f1_c57bl6.idr	intron (NM_199200, intron 1 of 7)	intron (NM_199200, intron 1 of 7)	669.0	NM_199200	217219.0	Mm.259924	NM_199200	ENSMUSG00000034685	Fam171a2	-	family with sequence similarity 171, member A2	protein-coding	0.0	1.5	0.0	0.0	1.5	0.0
Merged-chr2-150894751-4	chr2	150894226	150895226	+	832.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 1 of 12)	intron (NR_151505, intron 1 of 12)	10005.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-22090559-4	chr3	22090077	22091077	+	832.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	13925.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23974259-4	chr11	23973762	23974762	+	832.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	-78992.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	6.0	2.5	8.0	6.0	1.5	3.0
Merged-chr5-130456704-3	chr5	130456214	130457214	+	832.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021371, intron 1 of 5)	intron (NM_021371, intron 1 of 5)	7922.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98779270-3	chr12	98778769	98779769	+	832.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029334, intron 11 of 16)	intron (NM_029334, intron 11 of 16)	8247.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-154256982-4	chr1	154256474	154257474	+	832.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040629)	promoter-TSS (NR_040629)	-68.0	NR_040629	78112.0	Mm.401935	NR_040629	ENSMUSG00000099933	4930452N14Rik	-	RIKEN cDNA 4930452N14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23653667-2	chr17	23653127	23654127	+	832.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6879.0	NM_153784	212733.0	Mm.59997	NM_153784	ENSMUSG00000043782	Bicdl2	BICDR-2|Ccdc64b	BICD family like cargo adaptor 2	protein-coding	0.0	2.0	3.0	0.0	0.0	3.5
Merged-chr18-16252127-5	chr18	16251643	16252643	+	832.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-534097.0	NM_199055	71367.0	Mm.329304	NM_199055	ENSMUSG00000047161	Chst9	5430438D01Rik	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-143211751-6	chr4	143211207	143212207	+	832.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256380, intron 1 of 7)	intron (NM_001256380, intron 1 of 7)	1002.0	NM_001081355	110593.0	Mm.332020	NM_001081355	ENSMUSG00000057637	Prdm2	4833427P12Rik|E330024L24Rik|Gm1033|Gm19732|KMT8|Riz|Riz1|Znfpr1c1	PR domain containing 2, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119269869-2	chr11	119269369	119270369	+	832.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008064, intron 1 of 19)	intron (NM_008064, intron 1 of 19)	1906.0	NM_008064	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	11.5	6.0	27.0	11.5	33.5	25.5
Merged-chr12-102449936-2	chr12	102449436	102450436	+	832.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-10123.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	28.5	75.5	46.0	26.0	117.5	46.5
Merged-chr14-36952376-4	chr14	36951912	36952912	+	832.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027045, intron 1 of 10)	intron (NM_027045, intron 1 of 10)	-11148.0	NM_001347502	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78996780-4	chr15	78996276	78997276	+	832.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045746, intron 2 of 2)	intron (NR_045746, intron 2 of 2)	-5447.0	NR_105921	102465577.0		NR_105921	ENSMUSG00000099180	Mir6956	Gm27880|mmu-mir-6956	microRNA 6956	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35162366-3	chr2	35161864	35162864	+	832.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012018, intron 30 of 43)	intron (NM_012018, intron 30 of 43)	30130.0	NM_001290635	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180945498-3	chr1	180944996	180945996	+	832.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144794, intron 1 of 22)	intron (NM_144794, intron 1 of 22)	2978.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102221824-3	chr11	102221394	102222394	+	832.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284248, intron 2 of 28)	intron (NM_001284248, intron 2 of 28)	8256.0	NR_106179	102465892.0		NR_106179	ENSMUSG00000098863	Mir8101	Gm27705|mmu-mir-8101	microRNA 8101	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72535350-4	chr6	72534853	72535853	+	832.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9038.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101230455-4	chr7	101229943	101230943	+	832.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199012, intron 8 of 20)	intron (NM_199012, intron 8 of 20)	71645.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80291387-4	chr17	80290909	80291909	+	832.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163759)	promoter-TSS (NM_001163759)	-933.0	NM_001163759	106794.0	Mm.12412	NM_198942	ENSMUSG00000035051	Dhx57	AW494914	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-151344952-4	chr5	151344472	151345472	+	832.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23703.0	NR_045700	625175.0	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56583274-3	chr17	56582759	56583759	+	832.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029979, intron 1 of 20)	intron (NM_001029979, intron 1 of 20)	1326.0	NM_001029979	224902.0	Mm.214973	NM_001029979	ENSMUSG00000042625	Safb2	AA389433|AI255170|mKIAA0138	scaffold attachment factor B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-71616287-3	chr9	71615776	71616776	+	832.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23916.0	NM_001033208	102371.0	Mm.27585	NM_001033208	ENSMUSG00000041361	Myzap	AA407270|AV006038|Gcom1|Gm640|Grinl1a7|Myozap	myocardial zonula adherens protein	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr4-124990402-5	chr4	124989895	124990895	+	832.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138683, intron 1 of 5)	intron (NM_138683, intron 1 of 5)	3965.0	NM_138683	192199.0	Mm.42202	NM_138683	ENSMUSG00000028871	Rspo1	R-spondin|Rspondin	R-spondin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116628834-4	chr6	116628285	116629285	+	832.762512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302440)	promoter-TSS (NM_001302440)	-84.0	NM_001302440	67255.0	Mm.18810	NM_026057	ENSMUSG00000059878	Zfp422	2900028O21Rik|AU041373|KOX15|Krox-25-2|Krox-26|Krox25|Krox26|Znf22	zinc finger protein 422	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100324437-2	chr11	100323937	100324937	+	832.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	4488.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25261202-4	chr9	25260709	25261709	+	832.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359738, intron 1 of 12)	intron (NM_001359738, intron 1 of 12)	8317.0	NM_001359738	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-76932898-2	chr18	76932398	76933398	+	832.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_025409, intron 1 of 2)	intron (NM_025409, intron 1 of 2)	2871.0	NM_025409	66191.0	Mm.28593	NM_025409	ENSMUSG00000090000	Ier3ip1	1110057H19Rik|AI644142|AL022842|AL022863|AV026606	immediate early response 3 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47716318-4	chr9	47715780	47716780	+	832.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	101928.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	26.5	16.0	34.5	6.5	34.0	27.5
Merged-chr1-156034865-2	chr1	156034365	156035365	+	832.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160019)	promoter-TSS (NM_001160019)	-48.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	65.0	178.0	96.0	81.5	209.5	116.0
Merged-chr6-31202792-2	chr6	31202292	31203292	+	832.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	B2_Mm2|SINE|B2	15682.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7673786-3	chr10	7673255	7674255	+	832.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145706, intron 5 of 7)	intron (NM_145706, intron 5 of 7)	6251.0	NM_145706	69912.0	Mm.299887	NM_145706	ENSMUSG00000040034	Nup43	2610016K01Rik|2610529I12Rik|AA409950|p42	nucleoporin 43	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-68031076-3	chr18	68030583	68031583	+	832.716675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	MTD|LTR|ERVL-MaLR	97910.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82039056-7	chr11	82038539	82039539	+	832.7023929999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3462.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57940192-4	chr9	57939734	57940734	+	832.700012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011352)	promoter-TSS (NM_011352)	99.0	NM_011352	20361.0	Mm.335187	NM_011352	ENSMUSG00000038264	Sema7a	2900057C09Rik|CDw108|H-Sema-L|M-Sema-L|Semal	sema domain, immunoglobulin domain (Ig), and GPI membrane anchor, (semaphorin) 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-31082614-3	chr13	31082112	31083112	+	832.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108565.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88242705-4	chr3	88242228	88243228	+	832.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_021375)	TTS (NM_021375)	11956.0	NM_021375	58176.0	Mm.103777	NM_021375	ENSMUSG00000104445	Rhbg	-	Rhesus blood group-associated B glycoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46742799-3	chr8	46742322	46743322	+	832.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	3077.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78353286-4	chr11	78352782	78353782	+	832.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6572.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-145140941-4	chr5	145140427	145141427	+	832.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033313)	promoter-TSS (NM_001033313)	490.0	NM_001310770	231889.0	Mm.277413	NM_001008705	ENSMUSG00000038722	Bud31	C77604|EDG-2|EDG2|G10	BUD31 homolog	protein-coding	18.5	97.0	94.5	18.0	92.5	97.5
Merged-chr9-118648621-2	chr9	118648121	118649121	+	832.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	41912.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	4.0	2.0	12.5	4.0	2.0	12.5
Merged-chr10-111178102-6	chr10	111177586	111178586	+	832.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003717, intron 1 of 22)	intron (NM_001003717, intron 1 of 22)	13284.0	NM_175489	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47510021-2	chr17	47509521	47510521	+	832.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	4970.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27974827-4	chr15	27974362	27975362	+	832.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	50986.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-19111363-3	chr19	19110875	19111875	+	832.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001043354)	promoter-TSS (NM_001043354)	-179.0	NM_001043354	225998.0	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta|hstp	RAR-related orphan receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27213827-2	chr3	27213327	27214327	+	832.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	30823.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126798456-2	chr7	126797956	126798956	+	832.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177307, intron 1 of 9)	intron (NM_001177307, intron 1 of 9)	722.0	NM_001177307	11674.0	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-83638942-2	chr10	83638442	83639442	+	832.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_145220, intron 2 of 20)	ORR1F|LTR|ERVL-MaLR	9722.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122491757-4	chr6	122491237	122492237	+	832.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5432.0	NM_027664	108653.0	Mm.277939	NM_027664	ENSMUSG00000040649	Rimklb	4931417E21Rik|4933426K21Rik|AA097693|AI325948|AU015629|Naags	ribosomal modification protein rimK-like family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11008587-3	chr4	11008085	11009085	+	832.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175175)	promoter-TSS (NM_175175)	-966.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33962975-3	chr2	33962512	33963512	+	832.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75066.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122702469-3	chr2	122701983	122702983	+	832.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001290993, exon 1 of 6)	5' UTR (NM_001290993, exon 1 of 6)	180.0	NM_011774	22785.0	Mm.27801	NM_011774	ENSMUSG00000005802	Slc30a4	Znt4|lm|znT-4	solute carrier family 30 (zinc transporter), member 4	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr2-132516423-3	chr2	132515905	132516905	+	832.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028286, intron 2 of 3)	ORR1A2|LTR|ERVL-MaLR	25677.0	NR_028286	70371.0	Mm.394667	NR_028286	ENSMUSG00000086379	1700026D11Rik	-	RIKEN cDNA 1700026D11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82896500-4	chr15	82896006	82897006	+	832.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027799, exon 1 of 1)	non-coding (NR_027799, exon 1 of 1)	1955.0	NR_027799	21378.0	Mm.417272	NR_027799		Tbrg3	TB-11	transforming growth factor beta regulated gene 3	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4527282-4	chr11	4526781	4527781	+	832.520813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028860, intron 4 of 17)	intron (NM_028860, intron 4 of 17)	67534.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96974475-2	chr11	96973975	96974975	+	832.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030220, intron 1 of 6)	B1F|SINE|Alu	3213.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63404263-2	chr4	63403763	63404763	+	832.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045514)	promoter-TSS (NM_001045514)	-818.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64615084-2	chr17	64614584	64615584	+	832.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	13435.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71636711-2	chr8	71636211	71637211	+	832.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 35 of 41)	intron (NM_001029873, intron 35 of 41)	-5605.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	3.0	7.0	6.5	0.0	0.5	4.0
Merged-chr7-45013486-2	chr7	45012986	45013986	+	832.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106021)	promoter-TSS (NR_106021)	-999.0	NR_106021	102466218.0		NR_106021	ENSMUSG00000098839	Mir7054	Gm27557|mmu-mir-7054	microRNA 7054	ncRNA	2.0	0.0	0.0	5.0	0.0	0.0
Merged-chr13-46728536-2	chr13	46728038	46729038	+	832.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175749)	promoter-TSS (NM_175749)	-689.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	25.0	24.5	28.0	18.0	41.5	33.0
Merged-chr9-109046449-4	chr9	109045940	109046940	+	832.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357932, intron 2 of 5)	(CCTG)n|Simple_repeat|Simple_repeat	-4656.0	NM_001357935	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25289739-3	chr10	25289276	25290276	+	832.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 1 of 7)	intron (NM_018747, intron 1 of 7)	9387.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	5.0	0.0	2.0	3.5	1.0	0.5
Merged-chr10-67766344-2	chr10	67765844	67766844	+	832.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146318.0	NM_178679	216049.0	Mm.268346	NM_178679	ENSMUSG00000037855	Zfp365	AI839779|AV340892|DBZ|Su48|Znf365|talanin	zinc finger protein 365	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143975539-4	chr5	143975074	143976074	+	832.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	39279.0	NM_177682	231874.0	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37101843-3	chr9	37101334	37102334	+	832.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 1 of 12)	intron (NM_001029838, intron 1 of 12)	45488.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr8-61387823-3	chr8	61387317	61388317	+	832.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021506, intron 11 of 11)	intron (NM_021506, intron 11 of 11)	-98945.0	NR_045475	69279.0	Mm.417857	NR_045475	ENSMUSG00000099419	1700001D01Rik	-	RIKEN cDNA 1700001D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97434075-2	chr11	97433575	97434575	+	832.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2A1|LINE|L1	-16085.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	4.0	0.5	3.5	3.0	0.5	4.0
Merged-chr12-4640992-3	chr12	4640510	4641510	+	832.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001198969, exon 17 of 17)	3' UTR (NM_001198969, exon 17 of 17)	48002.0	NM_001198968	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67672845-4	chr7	67672338	67673338	+	832.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001168477)	TTS (NM_001168477)	25428.0	NM_001360653	67009.0	Mm.249356	NM_025905	ENSMUSG00000030555	Ttc23	1600012K10Rik	tetratricopeptide repeat domain 23	protein-coding	0.0	0.5	0.0	0.0	0.0	2.0
Merged-chr11-11707047-3	chr11	11706547	11707547	+	832.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025597, intron 2 of 7)	intron (NM_001025597, intron 2 of 7)	16870.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105890746-1	chr1	105890246	105891246	+	832.5	f0_balb.idr	Intergenic	Intergenic	99536.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56716514-3	chr18	56715980	56716980	+	832.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010721, intron 1 of 10)	intron (NM_010721, intron 1 of 10)	8667.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98900779-2	chr12	98900279	98901279	+	832.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081191, intron 1 of 43)	CpG	705.0	NM_001081191	319670.0	Mm.390484	NM_001081191	ENSMUSG00000051166	Eml5	BC027154|C130068M19Rik	echinoderm microtubule associated protein like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80056764-2	chr12	80056264	80057264	+	832.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56249.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-91343034-3	chr8	91342534	91343534	+	832.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011936, intron 1 of 8)	intron (NM_011936, intron 1 of 8)	29509.0	NM_011936	26383.0	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	33.5	47.5	37.0	11.0	17.5	9.5
Merged-chr3-65891289-3	chr3	65890781	65891781	+	832.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66968.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	17.5	5.5	13.5	18.5	30.5	10.0
Merged-chr16-55965844-2	chr16	55965344	55966344	+	832.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024218)	promoter-TSS (NM_024218)	-431.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3737187-3	chr12	3736705	3737705	+	832.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 12 of 17)	intron (NM_001162465, intron 12 of 17)	-69775.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-80949440-2	chr8	80948933	80949933	+	832.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	65473.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	92.0	232.0	158.5	95.5	234.5	119.0
Merged-chr4-133602200-2	chr4	133601700	133602700	+	832.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018754)	promoter-TSS (NM_018754)	-32.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	4.0	5.5	0.5	0.0	0.0	0.5
Merged-chr6-135250801-3	chr6	135250291	135251291	+	832.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080553, intron 1 of 5)	(A)n|Simple_repeat|Simple_repeat	-2907.0	NM_001080552	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	8.0	2.0	2.0	9.0	9.5	8.0
Merged-chr11-101987213-2	chr11	101986713	101987713	+	832.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029287, exon 1 of 6)	exon (NM_029287, exon 1 of 6)	157.0	NM_029287	75437.0	Mm.108632	NM_029287	ENSMUSG00000010841	1700006E09Rik	Cfap97d1	RIKEN cDNA 1700006E09 gene	protein-coding	0.0	0.0	1.0	0.0	0.0	1.5
Merged-chr9-44720638-2	chr9	44720138	44721138	+	832.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153537, intron 4 of 21)	intron (NM_153537, intron 4 of 21)	14560.0	NM_153537	102693.0	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-98180247-2	chr2	98179747	98180747	+	832.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	712590.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-22335629-4	chr10	22335139	22336139	+	832.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-26255.0	NM_020030	56554.0	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	11.0	3.0	4.0	12.5	7.0	7.5
Merged-chr10-117416840-2	chr10	117416340	117417340	+	832.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30595.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17899389-2	chr17	17898893	17899893	+	832.450012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11569.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	8.0	0.5	15.0	3.5	8.0	17.5
Merged-chr12-59040314-4	chr12	59039877	59040877	+	832.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	U2|snRNA|snRNA	21095.0	NM_001306218	78232.0	Mm.290070	NM_030057	ENSMUSG00000020993	Trappc6b	5830498C14Rik|C79212	trafficking protein particle complex 6B	protein-coding	3.0	4.5	4.5	3.0	4.5	8.0
Merged-chr12-69475569-4	chr12	69475064	69476064	+	832.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038060)	promoter-TSS (NR_038060)	-14.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	0.0	0.0	0.0	0.0	4.5	0.0
Merged-chr11-69102307-2	chr11	69101807	69102807	+	832.428589	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159367, intron 8 of 22)	intron (NM_001159367, intron 8 of 22)	2155.0	NM_001159367	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133202348-4	chr4	133201748	133202748	+	832.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6593.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	8.0	5.5	14.5	9.0	7.0	23.5
Merged-chr6-40236084-6	chr6	40235625	40236625	+	832.402771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004182, intron 2 of 2)	intron (NM_001004182, intron 2 of 2)	-89353.0	NM_023538	69923.0	Mm.32840	NM_023538	ENSMUSG00000029916	Agk	2610037M15Rik|6720408I04Rik|AI465370|Mulk	acylglycerol kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8811926-3	chr10	8811420	8812420	+	832.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 4 of 19)	L1MC4|LINE|L1	74150.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43498882-4	chr4	43498400	43499400	+	832.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001013377, exon 6 of 12)	exon (NM_001013377, exon 6 of 12)	5535.0	NM_001037913	622404.0	Mm.289109	NM_001037913	ENSMUSG00000028461	Ccdc107	-	coiled-coil domain containing 107	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-58163582-3	chr2	58163061	58164061	+	832.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045895)	promoter-TSS (NR_045895)	-413.0	NR_045896	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73550745-2	chr2	73550245	73551245	+	832.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21258.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124014117-4	chr5	124013690	124014690	+	832.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	17338.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	2.0	1.0	0.0	0.0	0.5	0.5
Merged-chr13-73847595-4	chr13	73847070	73848070	+	832.362488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028186)	promoter-TSS (NM_028186)	61.0	NM_028186	72293.0	Mm.45506	NM_028186	ENSMUSG00000021567	Nkd2	2210403L10Rik|AW212591|mNkd2	naked cuticle 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-66830581-5	chr4	66829974	66830974	+	832.34668	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021297, intron 1 of 2)	Lx2|LINE|L1	2923.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	4.5	28.0	33.0	9.5	51.5	19.0
Merged-chr3-89859805-2	chr3	89859305	89860305	+	832.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172530)	TTS (NM_172530)	28435.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-121136993-4	chr1	121136493	121137493	+	832.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49588.0	NR_110450	98452.0	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA	3.5	5.5	1.0	3.0	0.0	0.0
Merged-chr2-103945551-2	chr2	103945051	103946051	+	832.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12444.0	NM_001142337	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15380808-3	chr17	15380302	15381302	+	832.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4979.0	NM_007865	13388.0	Mm.4875	NM_007865	ENSMUSG00000014773	Dll1	Delta1	delta like canonical Notch ligand 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63868985-3	chr4	63868487	63869487	+	832.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7703.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-15853292-4	chr13	15852763	15853763	+	832.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155430, intron 3 of 3)	MLT1A1|LTR|ERVL-MaLR	46020.0	NR_046131	328190.0	Mm.446957	NR_046131	ENSMUSG00000113338	A530046M15Rik	A530046M15	RIKEN cDNA A530046M15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74196185-2	chr1	74195685	74196685	+	832.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1554.0	NM_178241	227288.0	Mm.337035	NM_178241	ENSMUSG00000048480	Cxcr1	Il8ra	chemokine (C-X-C motif) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66559301-3	chr15	66558808	66559808	+	832.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172514, exon 2 of 10)	exon (NM_172514, exon 2 of 10)	1738.0	NM_172514	213068.0	Mm.132299	NM_172514	ENSMUSG00000036944	Tmem71	AI661017|E430024D12	transmembrane protein 71	protein-coding	29.5	52.5	53.5	24.5	47.0	40.5
Merged-chr6-145800376-3	chr6	145799942	145800942	+	832.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-7941.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-49518636-3	chr4	49518150	49519150	+	832.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178603, intron 1 of 1)	MTD|LTR|ERVL-MaLR	2433.0	NM_178603	28028.0	Mm.30052	NM_178603	ENSMUSG00000044018	Mrpl50	AA408971|AI317351|D4Wsu125e	mitochondrial ribosomal protein L50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124717082-4	chr6	124716569	124717569	+	832.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_029554)	TTS (NR_029554)	916.0	NR_029554	387159.0		NR_029554	ENSMUSG00000065474	Mir141	Mirn141|mir-141|mmu-mir-141	microRNA 141	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71286927-3	chr17	71286394	71287394	+	832.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	24117.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	28.0	36.5	33.0	34.0	83.5	64.0
Merged-chr17-25318555-3	chr17	25318058	25319058	+	832.288879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053260)	promoter-TSS (NM_053260)	-96.0	NM_053260	114662.0	Mm.207082	NM_053260	ENSMUSG00000034039	Prss29	D19363|Isp2|mISP-2	protease, serine 29	protein-coding	8.5	5.0	12.0	21.5	26.5	31.5
Merged-chr5-99269253-3	chr5	99268758	99269758	+	832.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16331.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	27.0	95.5	64.5	96.0	109.5	104.5
Merged-chr7-110679995-4	chr7	110679505	110680505	+	832.270813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	52348.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112761434-4	chr12	112760935	112761935	+	832.270813	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178911, intron 1 of 10)	intron (NM_178911, intron 1 of 10)	780.0	NM_178911	104759.0	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61064884-2	chr10	61064384	61065384	+	832.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24447.0	NM_025273	13180.0	Mm.39473	NM_025273	ENSMUSG00000020098	Pcbd1	Dcoh|Pcbd|Pcd|Phs	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116201992-2	chr6	116201492	116202492	+	832.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_131013, intron 3 of 3)	intron (NR_131013, intron 3 of 3)	6001.0	NR_131013	78739.0	Mm.417032	NR_131013	ENSMUSG00000108030	9530062K07Rik	-	RIKEN cDNA 9530062K07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153136433-2	chr2	153135939	153136939	+	832.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 8 of 12)	PB1D11|SINE|Alu	-24862.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61721844-2	chr11	61721344	61722344	+	832.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-1045.0	NM_001033227	109342.0	Mm.441070	NM_001033227	ENSMUSG00000042371	Slc5a10	C330021F16Rik|SGLT5	solute carrier family 5 (sodium/glucose cotransporter), member 10	protein-coding	0.0	3.5	0.0	0.0	3.5	0.0
Merged-chr5-130196426-2	chr5	130195926	130196926	+	832.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359233, intron 3 of 7)	B1F1|SINE|Alu	9246.0	NM_019983	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8659327-2	chr11	8658827	8659827	+	832.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	5208.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	4.5	0.5	2.5	0.0	1.5	5.0
Merged-chr17-25117427-3	chr17	25116930	25117930	+	832.244446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1463.0	NM_001163661	71718.0	Mm.288702	NM_027880	ENSMUSG00000024170	Telo2	1200003M09Rik|AI415602|Tel2|mKIAA0683	telomere maintenance 2	protein-coding	3.5	0.0	5.0	0.0	23.5	11.0
Merged-chr18-5131898-3	chr18	5131416	5132416	+	832.233337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_B|LTR|ERVK	33815.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-88436868-3	chr9	88436353	88437353	+	832.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359958, intron 1 of 28)	intron (NM_001359958, intron 1 of 28)	2098.0	NM_001359958	244962.0	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-47945571-3	chr18	47945043	47946043	+	832.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045404, intron 2 of 3)	intron (NR_045404, intron 2 of 3)	22702.0	NR_045404	414127.0	Mm.450768	NR_045404		G630055G22Rik	-	RIKEN cDNA G630055G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111226645-3	chr10	111226125	111227125	+	832.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175489, intron 3 of 23)	intron (NM_175489, intron 3 of 23)	61823.0	NM_175489	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172526823-3	chr1	172526324	172527324	+	832.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027972, intron 1 of 11)	MLT1N2|LTR|ERVL-MaLR	5694.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	18.0	35.0	42.5	9.0	5.5	4.5
Merged-chr17-46252822-4	chr17	46252369	46253369	+	832.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145353)	TTS (NM_145353)	-1296.0	NM_001111142	224813.0	Mm.70999	NM_001111142	ENSMUSG00000071073	Lrrc73	Gm88	leucine rich repeat containing 73	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79398090-4	chr8	79397595	79398595	+	832.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	1373.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10846261-4	chr19	10845713	10846713	+	832.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023044, intron 1 of 7)	intron (NM_023044, intron 1 of 7)	3669.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30842270-4	chr7	30841778	30842778	+	832.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13900.0	NM_001033316	233080.0	Mm.291167	NM_001033316	ENSMUSG00000019429	Ffar3	Gm478|Gpr41	free fatty acid receptor 3	protein-coding	0.0	10.5	6.5	0.0	1.0	1.0
Merged-chr1-62706404-6	chr1	62705926	62706926	+	832.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 1 of 16)	CpG	3109.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106827270-2	chr11	106826770	106827770	+	832.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_025481, intron 16 of 18)	intron (NM_025481, intron 16 of 18)	38018.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21420905-2	chr5	21420405	21421405	+	832.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 1 of 18)	intron (NM_029195, intron 1 of 18)	3772.0	NM_029195	75172.0	Mm.426695	NM_029195	ENSMUSG00000064280	Ccdc146	4930528G09Rik|mKIAA1505	coiled-coil domain containing 146	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84228365-2	chr3	84227865	84228865	+	832.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271726, intron 1 of 11)	intron (NM_001271726, intron 1 of 11)	-7488.0	NM_030706	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	6.5	12.5	12.5	5.0	14.5	7.0
Merged-chr15-88716547-2	chr15	88716047	88717047	+	832.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033274, intron 3 of 12)	intron (NM_001033274, intron 3 of 12)	17672.0	NM_001033274	223770.0	Mm.254438	NM_001033274	ENSMUSG00000022387	Brd1	1110059H06Rik|AI316859|mKIAA4191	bromodomain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105397931-2	chr8	105397431	105398431	+	832.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301173, intron 2 of 15)	intron (NM_001301173, intron 2 of 15)	15571.0	NM_177791	279499.0	Mm.67628	NM_177791	ENSMUSG00000051648	Kctd19	4922504H04Rik	potassium channel tetramerisation domain containing 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36193772-4	chr17	36193262	36194262	+	832.145813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3611.0	NM_008208	15043.0	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr11-120597790-7	chr11	120597271	120598271	+	832.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025389)	promoter-TSS (NM_025389)	594.0	NM_011568	21681.0	Mm.1886	NM_011568	ENSMUSG00000025134	Alyref	Aly|Ref1|Ref1-I|Refbp1|Tho4|Thoc4	Aly/REF export factor	protein-coding	17.0	18.5	18.0	10.0	23.5	15.5
Merged-chr2-124712998-4	chr2	124712490	124713490	+	832.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	59409.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84270311-4	chr17	84269831	84270831	+	832.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 30 of 37)	B1_Mus1|SINE|Alu	-82384.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124668568-7	chr2	124668080	124669080	+	832.115662	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172537)	TTS (NM_172537)	14999.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-87075324-2	chr14	87074827	87075827	+	832.099976	f0_balb.idr|f1_balb.idr	intron (NM_019670, intron 3 of 27)	ORR1C1|LTR|ERVL-MaLR	65897.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	7.0	5.0	11.0	0.5	7.5	0.5
Merged-chr11-55471780-2	chr11	55471280	55472280	+	832.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013716, intron 1 of 11)	intron (NM_013716, intron 1 of 11)	2028.0	NM_013716	27041.0	Mm.39631	NM_013716	ENSMUSG00000018583	G3bp1	AI849976|B430204O07|C87777|G3bp|mKIAA4115	GTPase activating protein (SH3 domain) binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-108244420-4	chr11	108243916	108244916	+	832.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	99472.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-37051920-3	chr17	37051420	37052420	+	832.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019439, intron 6 of 22)	intron (NM_019439, intron 6 of 22)	5954.0	NM_019439	54393.0	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136462774-7	chr4	136462261	136463261	+	832.071411	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7000.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	22.5	25.0	26.0	49.5	69.5	52.0
Merged-chr13-98809234-3	chr13	98808737	98809737	+	832.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172591, intron 1 of 25)	B2_Mm2|SINE|B2	6212.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94874462-4	chr8	94873943	94874943	+	832.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053246, intron 1 of 8)	intron (NM_053246, intron 1 of 8)	1869.0	NM_053246	114255.0	Mm.203949	NM_053246	ENSMUSG00000040631	Dok4	-	docking protein 4	protein-coding	0.0	1.5	0.5	0.0	1.5	0.5
Merged-chr17-34591581-4	chr17	34591040	34592040	+	832.037476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017463)	promoter-TSS (NM_017463)	-931.0	NM_017463	18515.0	Mm.390957	NM_017463	ENSMUSG00000034673	Pbx2	AU043397|G17	pre B cell leukemia homeobox 2	protein-coding	2.5	12.0	1.5	3.5	4.0	2.5
Merged-chr11-115070291-2	chr11	115069791	115070791	+	832.025024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8252.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0.0	0.0	1.0	1.0	0.0	1.0
Merged-chr7-31174702-2	chr7	31174202	31175202	+	832.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	12344.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	0.0	12.5	0.5	0.0	0.0	1.0
Merged-chr6-97877608-3	chr6	97877104	97878104	+	832.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	-52213.0	NM_001178049	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155892789-3	chr4	155892260	155893260	+	832.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033490)	promoter-TSS (NM_001033490)	885.0	NM_207223	140500.0	Mm.219591	NM_207223	ENSMUSG00000029033	Acap3	Centb5|Kiaa1716-hp|mKIAA1716	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	protein-coding	12.0	20.0	4.0	21.0	34.0	16.5
Merged-chr16-85491798-2	chr16	85491298	85492298	+	832.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144853, intron 2 of 3)	intron (NM_144853, intron 2 of 3)	58575.0	NM_144853	224405.0	Mm.213203	NM_144853	ENSMUSG00000041134	Cyyr1	-	cysteine and tyrosine-rich protein 1	protein-coding	2.0	0.5	0.0	0.0	0.0	0.0
Merged-chr8-46680825-1	chr8	46680325	46681325	+	832.0	f0_balb.idr	Intergenic	L1M6|LINE|L1	58690.0	NR_045750	100503498.0	Mm.187358	NR_045750	ENSMUSG00000097534	Gm16675	-	predicted gene, 16675	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-148444016-2	chr6	148443516	148444516	+	832.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347518, exon 1 of 19)	exon (NM_001347518, exon 1 of 19)	336.0	NM_198967	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-140715155-4	chr6	140714666	140715666	+	832.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88281.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73424730-2	chr7	73424230	73425230	+	832.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48956.0	NR_040324	319783.0	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85838110-3	chr11	85837589	85838589	+	832.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009324, exon 6 of 7)	exon (NM_009324, exon 6 of 7)	5474.0	NM_009324	21385.0	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-51488987-2	chr1	51488487	51489487	+	832.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B3|LTR|ERVK	-10588.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19053682-2	chr7	19053182	19054182	+	832.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026605, intron 25 of 26)	intron (NM_026605, intron 25 of 26)	-1005.0	NM_031255	83434.0	Mm.84435	NM_031255	ENSMUSG00000040866	Rsph6a	RSP4|Rshl1	radial spoke head 6 homolog A (Chlamydomonas)	protein-coding	0.0	0.0	0.0	0.0	5.5	0.0
Merged-chr11-49081570-2	chr11	49081070	49082070	+	832.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271677, intron 1 of 2)	intron (NM_001271677, intron 1 of 2)	4983.0	NM_001271677	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150678577-4	chr2	150678092	150679092	+	832.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10352.0	NM_080575	68738.0	Mm.7044	NM_080575	ENSMUSG00000027452	Acss1	1110032O15Rik|AI788978|Acas2|Acas2l|AceCS2	acyl-CoA synthetase short-chain family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139231354-1	chr7	139230854	139231854	+	832.0	f1_balb.idr	intron (NM_027164, intron 8 of 10)	intron (NM_027164, intron 8 of 10)	-17128.0	NM_001033206	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	0.0	1.5	0.0	1.0	0.0	1.0
Merged-chr2-4572882-2	chr2	4572382	4573382	+	832.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 3 of 11)	intron (NM_001177844, intron 3 of 11)	13128.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127574559-2	chr10	127574059	127575059	+	832.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 26 of 88)	intron (NM_008512, intron 26 of 88)	-40000.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.0	7.5	1.0	0.5	1.0	0.5
Merged-chr1-173428087-2	chr1	173427587	173428587	+	832.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 2 of 8)	B2_Mm2|SINE|B2	7483.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	30.5	58.5	18.0	50.5	36.5	39.5
Merged-chr2-173335283-1	chr2	173334783	173335783	+	832.0	f1_c57bl6.idr	Intergenic	Intergenic	-58750.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	2.5	1.0	0.0	2.5	2.5	0.0
Merged-chr11-80170419-2	chr11	80169918	80170918	+	832.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_172133, intron 6 of 10)	intron (NM_172133, intron 6 of 10)	-13454.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	66.5	106.5	96.0	78.5	113.0	105.5
Merged-chr9-7897739-4	chr9	7897228	7898228	+	832.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24558.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107676814-4	chr11	107676307	107677307	+	832.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198298, intron 30 of 31)	intron (NM_198298, intron 30 of 31)	39085.0	NR_105897	102465562.0		NR_105897	ENSMUSG00000098497	Mir6932	Gm27691|mmu-mir-6932	microRNA 6932	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61717473-2	chr10	61716973	61717973	+	832.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178058, intron 1 of 9)	L1MB8|LINE|L1	2210.0	NM_001284300	71361.0	Mm.286309	NM_153779	ENSMUSG00000020085	Aifm2	5430437E11Rik|Amid|D730001I10Rik|PRG3	apoptosis-inducing factor, mitochondrion-associated 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32729641-1	chr5	32729141	32730141	+	832.0	f1_balb.idr	Intergenic	Intergenic	16701.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107692309-2	chr9	107691809	107692809	+	832.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011349, intron 4 of 17)	intron (NM_011349, intron 4 of 17)	-12717.0	NM_008140	14685.0	Mm.284853	NM_008140	ENSMUSG00000034837	Gnat1	Gnat-1|Ird1|Ird2|Tralpha|irdc|irdr|transducin	guanine nucleotide binding protein, alpha transducing 1	protein-coding	1.5	0.0	0.0	4.0	0.0	3.0
Merged-chr2-167587122-2	chr2	167586622	167587622	+	832.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44883.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31188241-4	chr16	31187734	31188734	+	832.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030138, intron 1 of 22)	MER45A|DNA|hAT-Tip100	13004.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	9.5	2.0	0.5	11.0	2.0	2.0
Merged-chr2-167257354-4	chr2	167256860	167257860	+	832.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-16823.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-40188663-1	chr7	40188163	40189163	+	832.0	f1_c57bl6.idr	Intergenic	Intergenic	-486074.0	NR_045504	71029.0	Mm.399496	NR_045504	ENSMUSG00000102004	4933402C06Rik	-	RIKEN cDNA 4933402C06 gene	ncRNA	7.5	4.0	1.5	0.0	3.0	0.5
Merged-chr12-86083594-2	chr12	86083094	86084094	+	832.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029601, intron 1 of 7)	intron (NM_029601, intron 1 of 7)	1033.0	NM_001199843	76411.0	Mm.292345	NM_029601	ENSMUSG00000007867	Ift43	1700019E19Rik|R75064	intraflagellar transport 43	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94629115-2	chr16	94628615	94629615	+	832.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	intron (NM_001113389, intron 2 of 11)	17696.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101270760-2	chr15	101270260	101271260	+	832.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010444, exon 2 of 7)	exon (NM_010444, exon 2 of 7)	3914.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158258883-2	chr2	158258383	158259383	+	832.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356542, intron 1 of 14)	intron (NM_001356542, intron 1 of 14)	642.0	NM_001356542	329547.0	Mm.260883	NM_177850	ENSMUSG00000052922	Bpi	9230105K17Rik|Bpifd1	bactericidal permeablility increasing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142879958-2	chr5	142879458	142880458	+	832.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033312, intron 3 of 4)	intron (NM_001033312, intron 3 of 4)	15280.0	NM_001033312	231863.0	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-37120642-2	chr15	37120142	37121142	+	832.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112394.0	NM_026496	252973.0	Mm.244612	NM_026496	ENSMUSG00000022286	Grhl2	0610015A08Rik|BOM|Tcfcp2l3|clft3	grainyhead like transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57106111-1	chr17	57105611	57106611	+	832.0	f1_c57bl6.idr	promoter-TSS (NR_033508)	promoter-TSS (NR_033508)	-169.0	NR_033508	100169874.0	Mm.76700	NR_033508	ENSMUSG00000079414	Gm11110	-	predicted gene 11110	ncRNA	0.0	8.5	3.5	0.0	10.5	1.5
Merged-chr1-132319375-2	chr1	132318875	132319875	+	832.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195025, intron 1 of 7)	intron (NM_001195025, intron 1 of 7)	3250.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-100667010-1	chr6	100666510	100667510	+	832.0	f0_balb.idr	intron (NM_181590, intron 2 of 10)	intron (NM_181590, intron 2 of 10)	4147.0	NM_181590	72171.0	Mm.256022	NM_181590	ENSMUSG00000035378	Shq1	2810403P18Rik|Grim-1	SHQ1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23683047-2	chr13	23682481	23683481	+	832.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178189)	TTS (NM_178189)	978.0	NM_178189	319164.0	Mm.261973	NM_178189	ENSMUSG00000069270	Hist1h2ac	-	histone cluster 1, H2ac	protein-coding	23.5	39.5	24.5	12.0	48.5	32.0
Merged-chr19-40683670-2	chr19	40683170	40684170	+	832.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	23900.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	150.5	361.0	199.5	147.5	331.0	183.0
Merged-chr18-4635337-2	chr18	4634837	4635837	+	832.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081963, intron 1 of 3)	CpG	408.0	NM_001081963	240185.0	Mm.33179	NM_001081963	ENSMUSG00000033960	Jcad	1110056P05Rik|9430020K01Rik|Gm328|mKIAA1462	junctional cadherin 5 associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31512701-2	chr17	31512201	31513201	+	832.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021322)	promoter-TSS (NM_021322)	-214.0	NM_021322	57773.0	Mm.143771	NM_021322	ENSMUSG00000024037	Wdr4	AI415180|AI448349|D530049K22Rik|Wh	WD repeat domain 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115598486-2	chr8	115597986	115598986	+	832.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108408.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132307608-2	chr4	132307108	132308108	+	832.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-1070.0	NR_029468	100039864.0	Mm.258912	NR_029468	ENSMUSG00000086290	Snhg12	2310005L22Rik	small nucleolar RNA host gene 12	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31363480-2	chr14	31362980	31363980	+	832.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001360187, exon 13 of 21)	exon (NM_001360187, exon 13 of 21)	26842.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104337766-2	chr9	104337260	104338260	+	832.0	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019807)	promoter-TSS (NM_019807)	-38.0	NM_207668	56318.0	Mm.19941	NM_019807	ENSMUSG00000032561	Acpp	5'-NT|A030005E02Rik|FRAP|Lap|PAP|Ppal	acid phosphatase, prostate	protein-coding	10.5	9.0	5.5	0.0	11.0	1.5
Merged-chr13-81427609-2	chr13	81427109	81428109	+	832.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_054053, exon 71 of 90)	exon (NM_054053, exon 71 of 90)	205535.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109585202-3	chr11	109584705	109585705	+	832.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145940, intron 4 of 12)	intron (NM_145940, intron 4 of 12)	26184.0	NM_145940	52639.0	Mm.35817	NM_145940	ENSMUSG00000041895	Wipi1	4930533H01Rik|AW411817|D11Ertd498e	WD repeat domain, phosphoinositide interacting 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-17350631-3	chr19	17350114	17351114	+	831.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	6053.0	NM_173442	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	10.5	25.0	14.5	12.5	12.5	13.0
Merged-chr19-5814589-3	chr19	5814013	5815013	+	831.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11841.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103655274-4	chr2	103654749	103655749	+	831.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	88939.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	2.0	0.0	1.0	0.0	0.0	1.0
Merged-chr4-26347435-4	chr4	26346936	26347936	+	831.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172865)	promoter-TSS (NM_172865)	-784.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-157076400-4	chr1	157075877	157076877	+	831.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32273.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	10.5	2.0	4.5	2.0	1.5	1.5
Merged-chr16-87623929-4	chr16	87623436	87624436	+	831.895813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	70606.0	NM_144854	224419.0	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	27.5	60.0	41.5	15.5	18.0	40.0
Merged-chr2-92056225-4	chr2	92055720	92056720	+	831.891663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32050.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-133087782-3	chr1	133087294	133088294	+	831.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099276, intron 15 of 32)	intron (NM_001099276, intron 15 of 32)	41782.0	NM_001099276	240752.0	Mm.387308	NM_001099276	ENSMUSG00000026447	Pik3c2b	C330011J12Rik|Gm199|PI3K-C2beta|PI3KC2beta	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta	protein-coding	0.0	0.5	0.0	0.0	0.0	4.5
Merged-chr5-25086409-3	chr5	25085906	25086906	+	831.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 1 of 15)	MIRb|SINE|MIR	14236.0	NM_145401	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88600207-3	chr1	88599705	88600705	+	831.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48688.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91485833-2	chr16	91485333	91486333	+	831.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_010508, intron 1 of 10)	intron (NM_010508, intron 1 of 10)	618.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46808452-4	chr11	46807987	46808987	+	831.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2312.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123684684-7	chr5	123684424	123685424	+	831.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291229)	promoter-TSS (NM_001291229)	-563.0	NM_001359222	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	15.0	43.5	48.5	26.0	56.5	53.5
Merged-chr18-44687041-2	chr18	44686541	44687541	+	831.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085373, intron 3 of 18)	intron (NM_001085373, intron 3 of 18)	-24775.0	NM_001085374	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	0.0	2.0	0.5	2.5	0.0	3.5
Merged-chr7-130621420-4	chr7	130620910	130621910	+	831.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_206856, intron 2 of 20)	B4|SINE|B4	43926.0	NM_206856	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34586128-2	chr19	34585628	34586628	+	831.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010501, intron 1 of 1)	intron (NM_010501, intron 1 of 1)	2599.0	NM_010501	15959.0	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80018881-4	chr10	80018377	80019377	+	831.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027521)	promoter-TSS (NM_027521)	-798.0	NM_027521	70719.0	Mm.243954	NM_027521	ENSMUSG00000035697	Arhgap45	6330406L22Rik|AW539505|Ha-1|Hmha1	Rho GTPase activating protein 45	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142392392-2	chr7	142391892	142392892	+	831.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4522.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	62.5	113.5	80.0	52.0	65.5	59.5
Merged-chr1-163910515-4	chr1	163910019	163911019	+	831.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305643, intron 19 of 19)	intron (NM_001305643, intron 19 of 19)	-18581.0	NM_001286002	240880.0	Mm.389213	NM_028776	ENSMUSG00000026584	Scyl3	1200016D23Rik|6030457O16|AW214499|Pace1	SCY1-like 3 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6389759-4	chr11	6389278	6390278	+	831.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5347.0	NM_001005867	52915.0	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	0.0	2.0	3.0	0.0	2.0	2.5
Merged-chr9-118672918-2	chr9	118672390	118673390	+	831.833313	f1_balb.idr|f1_c57bl6.idr	exon (NM_133721, exon 11 of 28)	exon (NM_133721, exon 11 of 28)	-38802.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	79.5	142.5	87.5	39.0	86.0	60.0
Merged-chr1-152521027-4	chr1	152520503	152521503	+	831.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 17 of 17)	intron (NM_016846, intron 17 of 17)	104214.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-125122394-4	chr2	125121899	125122899	+	831.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162418, intron 1 of 14)	intron (NM_001162418, intron 1 of 14)	1261.0	NM_001162417	17876.0	Mm.18535	NM_010852	ENSMUSG00000027201	Myef2	9430071B01|mKIAA1341	myelin basic protein expression factor 2, repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47317414-4	chr6	47316894	47317894	+	831.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14_RN|LTR|ERV1	72998.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45659763-4	chr14	45659270	45660270	+	831.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1627.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	32.5	47.5	39.0	17.5	34.5	61.5
Merged-chr1-84933673-4	chr1	84933180	84934180	+	831.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027921, intron 1 of 4)	intron (NM_027921, intron 1 of 4)	1403.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106122158-4	chr11	106121655	106122655	+	831.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 5 of 15)	(TTTTG)n|Simple_repeat|Simple_repeat	37253.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-19842939-3	chr13	19842443	19843443	+	831.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18686.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	3.0	10.0	17.5	5.0	38.0	17.0
Merged-chr2-143903806-3	chr2	143903331	143904331	+	831.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11500.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110419019-4	chr12	110418572	110419572	+	831.766663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-28107.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152173213-4	chr4	152172700	152173700	+	831.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4900.0	NM_133348	70025.0	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75563968-2	chr11	75563456	75564456	+	831.75	f0_balb.idr|f1_balb.idr	intron (NM_001199284, intron 9 of 13)	intron (NM_001199284, intron 9 of 13)	12527.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	26.0	119.0	80.5	85.0	170.0	133.5
Merged-chr1-75477438-4	chr1	75476975	75477975	+	831.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001001566, exon 2 of 4)	exon (NM_001001566, exon 2 of 4)	1996.0	NM_001001566	74241.0	Mm.260577	NM_001001565	ENSMUSG00000032997	Chpf	1700028N03Rik|AI414328|D1Bwg1363e	chondroitin polymerizing factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81599048-2	chr10	81598548	81599548	+	831.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_053254, intron 3 of 13)	intron (NM_053254, intron 3 of 13)	-1458.0	NM_001359134	114606.0	Mm.206764	NM_053254	ENSMUSG00000034758	Tle6	1810057E06Rik|Grg6	transducin-like enhancer of split 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51281859-2	chr3	51281359	51282359	+	831.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 4 of 9)	A-rich|Low_complexity|Low_complexity	-4345.0	NM_001291062	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-58636904-3	chr3	58636373	58637373	+	831.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081262, exon 1 of 14)	exon (NM_001081262, exon 1 of 14)	334.0	NM_001081262	545527.0	Mm.357722	NM_001081262	ENSMUSG00000070471	Erich6	4932431H17Rik|Fam194a	glutamate rich 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97401040-2	chr11	97400568	97401568	+	831.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38517.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	3.0	0.0	0.0	0.0	5.0	0.0
Merged-chr15-98685502-2	chr15	98685002	98686002	+	831.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-8041.0	NM_172612	223881.0	Mm.274010	NM_172612	ENSMUSG00000054855	Rnd1	A830014L09Rik|Arhs	Rho family GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-54861421-1	chr7	54860921	54861921	+	831.75	f0_balb.idr	intron (NM_178705, intron 1 of 11)	intron (NM_178705, intron 1 of 11)	26176.0	NM_178705	233271.0	Mm.387344	NM_178705	ENSMUSG00000063297	Luzp2	9330154K17Rik|D130073E01	leucine zipper protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6178617-3	chr2	6178124	6179124	+	831.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14627.0	NR_040333	320132.0	Mm.445891	NR_040333	ENSMUSG00000087125	A230108P19Rik	-	RIKEN cDNA A230108P19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73059879-4	chr14	73059407	73060407	+	831.729187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10793.0	NM_001162412	70086.0	Mm.158324	NM_133720	ENSMUSG00000033470	Cysltr2	2300001H05Rik|CYSLT2R|Cltr2|Cyslt2	cysteinyl leukotriene receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181392756-3	chr2	181392225	181393225	+	831.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027656, intron 3 of 3)	intron (NM_027656, intron 3 of 3)	8475.0	NR_045164	329584.0	Mm.386906	NR_045164	ENSMUSG00000085028	Slc2a4rg-ps	C430010C01|Gm14462	Slc2a4 regulator, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142319551-3	chr5	142319035	142320035	+	831.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81962.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54156785-2	chr11	54156285	54157285	+	831.714233	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55861.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67297711-4	chr10	67297201	67298201	+	831.700012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12420.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-58134023-4	chr18	58133506	58134506	+	831.700012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010181, intron 7 of 64)	L1MB8|LINE|L1	75920.0	NM_010181	14119.0	Mm.20271	NM_010181	ENSMUSG00000024598	Fbn2	BC063774|Fib-2|mKIAA4226|sne|sy	fibrillin 2	protein-coding	22.5	19.5	14.5	13.5	9.5	10.5
Merged-chr14-52316053-5	chr14	52315511	52316511	+	831.700012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015772, intron 1 of 1)	intron (NM_015772, intron 1 of 1)	312.0	NM_001244916	50524.0	Mm.39487	NM_015772	ENSMUSG00000049532	Sall2	AI225809|AW559097|Msal-2|Sal-2|mKIAA0360|p150(Sal2)	spalt like transcription factor 2	protein-coding	3.0	11.0	7.5	4.0	1.0	3.0
Merged-chr15-58344944-6	chr15	58344556	58345556	+	831.680542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027211, intron 7 of 8)	intron (NM_027211, intron 7 of 8)	-20887.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	17.0	42.0	35.0	49.0	32.5	27.0
Merged-chr5-124028151-3	chr5	124027680	124028680	+	831.6777950000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	URR1B|DNA|hAT-Charlie	4080.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	4.5	24.0	18.0	8.5	38.5	13.5
Merged-chr4-130896583-4	chr4	130896103	130897103	+	831.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16731.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36579179-3	chr5	36578671	36579671	+	831.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113362, intron 2 of 14)	MIR|SINE|MIR	3226.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	2.5	0.0	1.5	0.5	1.0	1.5
Merged-chr9-13430565-3	chr9	13430113	13431113	+	831.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028271)	promoter-TSS (NR_028271)	-748.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	2.0	0.0	1.0	4.5	0.0	0.0
Merged-chr2-30266490-4	chr2	30265993	30266993	+	831.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281829)	promoter-TSS (NM_001281829)	-228.0	NM_001281829	227696.0	Mm.297949	NM_172267	ENSMUSG00000079484	Phyhd1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80373729-2	chr12	80373229	80374229	+	831.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_177267, intron 6 of 8)	intron (NM_177267, intron 6 of 8)	17948.0	NR_037207	100526530.0		NR_037207	ENSMUSG00000105972	Mir1843a	Mir1843|mir-1843a|mmu-mir-1843|mmu-mir-1843a	microRNA 1843a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88543076-4	chr5	88542567	88543567	+	831.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-11395.0	NM_023054	65961.0	Mm.490364	NM_023054	ENSMUSG00000070697	Utp3	2400011K09Rik|AW557551|C87704|Crl-1|Crl1|Crlz1|Sas10	UTP3 small subunit processome component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65396983-4	chr3	65396487	65397487	+	831.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4434.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	17.0	22.5	16.5	21.0	25.5	16.0
Merged-chr7-90442286-4	chr7	90441730	90442730	+	831.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145151)	promoter-TSS (NM_145151)	-551.0	NR_073436	233490.0	Mm.29496	NM_145151	ENSMUSG00000051451	Crebzf	1110034C16Rik|6330417B10Rik|LAZip|LAZipII|SMILE|Zf	CREB/ATF bZIP transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69023533-4	chr8	69023034	69024034	+	831.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-65202.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	3.5	2.0	4.5	0.0	10.0	1.0
Merged-chr2-165233653-3	chr2	165233181	165234181	+	831.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174988, intron 1 of 11)	CpG	1056.0	NM_174988	104010.0	Mm.151819	NM_174988	ENSMUSG00000053166	Cdh22	-	cadherin 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122925688-4	chr5	122925262	122926262	+	831.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003953, intron 11 of 22)	intron (NM_001003953, intron 11 of 22)	-25412.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	16.5	3.0	9.5	18.0	0.0	10.0
Merged-chr2-5592630-4	chr2	5592133	5593133	+	831.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	83413.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	9.0	9.0	31.0	25.0	25.0	39.0
Merged-chr9-44396213-2	chr9	44395713	44396713	+	831.583374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293630)	promoter-TSS (NM_001293630)	-714.0	NM_001293631	14385.0	Mm.30087	NM_008063	ENSMUSG00000032114	Slc37a4	100043178|G6PT|G6pt1|GSD-1b|mG6PT	solute carrier family 37 (glucose-6-phosphate transporter), member 4	protein-coding	49.5	71.0	89.0	31.5	74.5	59.5
Merged-chr7-44962849-4	chr7	44962331	44963331	+	831.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001252470, exon 13 of 19)	exon (NM_001252470, exon 13 of 19)	12020.0	NM_001357670	78070.0	Mm.231465	NM_153679	ENSMUSG00000007783	Cpt1c	6530437J22Rik|9630004I06Rik|CPT I-C|CPT IC|CPT1-B|CPTI-B	carnitine palmitoyltransferase 1c	protein-coding	0.5	0.0	0.5	0.0	4.5	0.5
Merged-chr10-40189863-4	chr10	40189380	40190380	+	831.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR6-int|LTR|ERV1	-47626.0	NM_001114332	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24621801-4	chr10	24621328	24622328	+	831.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR3a|LTR|Gypsy	26386.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0.0	0.0	0.5	10.0	0.0	0.0
Merged-chr3-131701142-4	chr3	131700648	131701648	+	831.575012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	135116.0	NM_001289477	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106534637-2	chr8	106534137	106535137	+	831.56665	f1_balb.idr|f1_c57bl6.idr	intron (NM_007665, intron 2 of 15)	B3|SINE|B2	23785.0	NM_001037809	12560.0	Mm.4658	NM_007665	ENSMUSG00000061048	Cdh3	AI385538|Cadp|Cdhp|P-cadherin|Pcad	cadherin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29241893-4	chr6	29241383	29242383	+	831.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER119|DNA|hAT-Charlie	-25519.0	NM_001302934	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-5375210-2	chr12	5374710	5375710	+	831.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001164493, exon 1 of 14)	5' UTR (NM_001164493, exon 1 of 14)	472.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-79663975-3	chr17	79663478	79664478	+	831.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201361, intron 5 of 10)	intron (NM_201361, intron 5 of 10)	49078.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-92241363-4	chr6	92240862	92241862	+	831.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009426)	TTS (NM_009426)	3288.0	NM_009426	22044.0	Mm.1363	NM_009426	ENSMUSG00000005892	Trh	Pro-TRH|Trf	thyrotropin releasing hormone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24427282-2	chr5	24426782	24427782	+	831.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253892)	promoter-TSS (NM_001253892)	-239.0	NM_001253892	20535.0	Mm.4580	NM_009207	ENSMUSG00000028962	Slc4a2	Ae2|B3RP	solute carrier family 4 (anion exchanger), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99108235-2	chr7	99107747	99108747	+	831.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 3 of 14)	intron (NM_178635, intron 3 of 14)	32897.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	10.5	5.5	4.5	1.5	9.0	8.0
Merged-chr1-54477452-2	chr1	54476949	54477949	+	831.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163314, exon 27 of 27)	3' UTR (NM_001163314, exon 27 of 27)	-38423.0	NM_001033194	98488.0	Mm.25856	NM_001033194	ENSMUSG00000041303	Gtf3c3	TF3C-gamma|TFIIIC102	general transcription factor IIIC, polypeptide 3	protein-coding	1.0	12.0	2.0	0.0	14.0	3.0
Merged-chr16-45149234-2	chr16	45148734	45149734	+	831.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028756, intron 4 of 6)	Lx5b|LINE|L1	9439.0	NM_001356453	74102.0	Mm.264984	NM_028756	ENSMUSG00000022664	Slc35a5	1010001J06Rik|AU021179|BB097433|D16Ertd450e|D730043G07Rik	solute carrier family 35, member A5	protein-coding	9.5	22.5	12.0	18.5	20.0	12.0
Merged-chr17-26113716-2	chr17	26113216	26114216	+	831.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021793, intron 1 of 12)	CpG	400.0	NM_021793	60455.0	Mm.304656	NM_021793	ENSMUSG00000024180	Tmem8	AW490096|GPI-PLA2|M83|Pgap6|Tmem8a	transmembrane protein 8 (five membrane-spanning domains)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77775129-2	chr15	77774629	77775629	+	831.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_022410, exon 22 of 41)	exon (NM_022410, exon 22 of 41)	-18119.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-48217081-2	chr15	48216581	48217581	+	831.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081391, intron 10 of 70)	RMER13B|LTR|ERVK	574908.0	NM_001081391	239420.0	Mm.309363	NM_001081391	ENSMUSG00000022311	Csmd3	4930500N14Rik|mKIAA1894	CUB and Sushi multiple domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101830720-2	chr7	101830220	101831220	+	831.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001122739, exon 13 of 29)	exon (NM_001122739, exon 13 of 29)	7104.0	NM_001122739	16332.0	Mm.476000	NM_010567	ENSMUSG00000032737	Inppl1	51C|SHIP2	inositol polyphosphate phosphatase-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11602663-4	chr4	11602157	11603157	+	831.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039556, intron 8 of 14)	intron (NM_001039556, intron 8 of 14)	22995.0	NM_001256142	100503583.0	Mm.249437	NM_001256142	ENSMUSG00000094595	Fsbp	-	fibrinogen silencer binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25215004-2	chr12	25214504	25215504	+	831.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85830.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	20.0	27.5	21.5	39.0	25.5	25.5
Merged-chr2-29629572-3	chr2	29629083	29630083	+	831.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	9863.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-62076819-2	chr1	62076319	62077319	+	831.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081050, intron 4 of 22)	intron (NM_001081050, intron 4 of 22)	59290.0	NR_151537	105243940.0		NR_151537		Pard3bos2	Gm12747	par-3 family cell polarity regulator beta, opposite strand 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-144433737-2	chr6	144433237	144434237	+	831.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-224169.0	NM_001243163	20678.0	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding	0.0	3.0	0.0	5.5	0.0	0.0
Merged-chr10-17178073-2	chr10	17177561	17178561	+	831.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-82279.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10986555-2	chr16	10986055	10987055	+	831.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	B3|SINE|B2	6566.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81849278-2	chr15	81848826	81849826	+	831.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_020507, exon 2 of 2)	3' UTR (NM_020507, exon 2 of 2)	9000.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	0.0	3.0	0.5	0.0	0.0	1.5
Merged-chr2-25266421-3	chr2	25265895	25266895	+	831.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175286, intron 1 of 3)	intron (NM_175286, intron 1 of 3)	3797.0	NM_175286	97031.0	Mm.308539	NM_175286	ENSMUSG00000048707	Tprn	C430004E15Rik|C87750	taperin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87215351-4	chr3	87214826	87215826	+	831.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-40579.0	NM_130867	170643.0	Mm.89552	NM_130867	ENSMUSG00000041734	Kirrel	6720469N11Rik|Kirrel1|Neph1	kirre like nephrin family adhesion molecule 1	protein-coding	56.5	105.5	92.0	43.5	45.0	50.0
Merged-chr7-126863743-2	chr7	126863201	126864201	+	831.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172746, exon 4 of 7)	exon (NM_172746, exon 4 of 7)	1729.0	NM_172746	233876.0	Mm.363427	NM_172746	ENSMUSG00000042606	Hirip3	B130036O03|C86302	HIRA interacting protein 3	protein-coding	0.0	3.0	0.0	7.0	0.0	0.0
Merged-chr16-35941548-2	chr16	35941048	35942048	+	831.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030253, intron 2 of 10)	B3|SINE|B2	-2521.0	NM_001013371	209200.0	Mm.390852	NM_001013371	ENSMUSG00000049502	Dtx3l	AU042200|BC023741	deltex 3-like, E3 ubiquitin ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-6230504-1	chr6	6230004	6231004	+	831.5	f0_balb.idr	Intergenic	Intergenic	-13331.0	NM_001177572	50799.0	Mm.24513	NM_015829	ENSMUSG00000015112	Slc25a13	AI785475|Ctrn	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29418627-2	chr19	29418127	29419127	+	831.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 1 of 5)	intron (NM_021396, intron 1 of 5)	7708.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80277067-1	chr18	80276567	80277567	+	831.5	f0_balb.idr	intron (NM_025861, intron 4 of 5)	PB1D10|SINE|Alu	20761.0	NM_025861	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110446986-2	chr5	110446486	110447486	+	831.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317042, intron 1 of 2)	intron (NM_001317042, intron 1 of 2)	1517.0	NM_001317042	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	0.5	0.5	2.5	0.0	4.0	6.0
Merged-chr10-118115714-2	chr10	118115214	118116214	+	831.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-26073.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128247660-4	chr7	128247175	128248175	+	831.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289553, intron 1 of 9)	intron (NM_001289553, intron 1 of 9)	863.0	NM_001289552	21804.0	Mm.3248	NM_009365	ENSMUSG00000030782	Tgfb1i1	ARA55|Hic5|TSC-5|hic-5	transforming growth factor beta 1 induced transcript 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32906997-4	chr19	32906476	32907476	+	831.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	149399.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	4.0	8.5	15.0	5.0	9.5	14.5
Merged-chr18-36738290-2	chr18	36737794	36738794	+	831.466675	f1_balb.idr|f1_c57bl6.idr	intron (NM_028036, intron 5 of 11)	intron (NM_028036, intron 5 of 11)	3224.0	NM_028036	71983.0	Mm.135188	NM_028036	ENSMUSG00000006850	Tmco6	2410015B03Rik	transmembrane and coiled-coil domains 6	protein-coding	2.0	3.0	1.5	0.0	0.5	2.0
Merged-chr8-90961781-4	chr8	90961267	90962267	+	831.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 4 of 39)	intron (NM_177224, intron 4 of 39)	29518.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	5.0	31.0	23.0	16.0	34.0	40.5
Merged-chr5-74253929-4	chr5	74253472	74254472	+	831.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114660, intron 5 of 8)	intron (NM_001114660, intron 5 of 8)	58646.0	NM_026878	68939.0	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	0.5	0.0	11.5	2.5	5.5	1.5
Merged-chr15-25035303-4	chr15	25034801	25035801	+	831.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	378463.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60815719-10	chr18	60814997	60815997	+	831.446655	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011552, intron 22 of 24)	intron (NM_011552, intron 22 of 24)	3421.0	NR_039567	100628611.0		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	8.5	17.5	9.5	11.5	28.0	11.0
Merged-chr17-35353168-3	chr17	35352660	35353660	+	831.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	10827.0	NM_010392	15013.0	Mm.427969	NM_010392	ENSMUSG00000091705	H2-Q2	BE136769|Gm11132|H-2Q2|gs14-2	histocompatibility 2, Q region locus 2	protein-coding	0.0	2.0	0.0	0.0	0.0	0.0
Merged-chr12-112844068-3	chr12	112843568	112844568	+	831.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-14547.0	NM_001359234	71963.0	Mm.313185	NM_028023	ENSMUSG00000047832	Cdca4	2410018C03Rik|HEPP|SEI-3	cell division cycle associated 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142967649-3	chr7	142967139	142968139	+	831.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008554, intron 2 of 2)	CpG	1625.0	NM_008554	17173.0	Mm.196417	NM_008554	ENSMUSG00000009248	Ascl2	2410083I15Rik|Mash2|bHLHa45	achaete-scute family bHLH transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-32093812-4	chr14	32093241	32094241	+	831.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145460, intron 3 of 7)	intron (NM_145460, intron 3 of 7)	8013.0	NM_145460	218885.0	Mm.202257	NM_145460	ENSMUSG00000021906	Oxnad1	2410002F01Rik|AW492292|BC019806	oxidoreductase NAD-binding domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102894863-4	chr2	102894391	102895391	+	831.4345089999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	6774.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	9.0	12.0	19.0	14.5	26.0	12.5
Merged-chr14-76382475-2	chr14	76381975	76382975	+	831.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-32486.0	NM_001310646	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115722811-2	chr11	115722311	115723311	+	831.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14214.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.0	0.0	2.0	0.0	3.0	1.5
Merged-chr18-61484748-2	chr18	61484261	61485261	+	831.416626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045419)	promoter-TSS (NR_045419)	-154.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	4.0	5.0	8.5	2.0	1.0	0.0
Merged-chr1-16139269-2	chr1	16138769	16139769	+	831.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33387.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	1.5	2.0	5.0	1.5	2.0	5.0
Merged-chr12-8348253-4	chr12	8347728	8348728	+	831.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34795.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	6.5	32.5	16.5	6.0	19.0	16.5
Merged-chr7-67260040-3	chr7	67259542	67260542	+	831.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 7 of 11)	intron (NM_001357324, intron 7 of 11)	37426.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125231289-3	chr6	125230796	125231796	+	831.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015604)	promoter-TSS (NR_015604)	20.0	NR_015604	78668.0	Mm.10626	NR_015604	ENSMUSG00000030337	E130112N10Rik	5830448L21Rik|9530059J11Rik	RIKEN cDNA E130112N10 gene	ncRNA	4.5	29.0	18.5	7.5	36.5	11.0
Merged-chr10-8869093-4	chr10	8868621	8869621	+	831.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	16949.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.0	11.5	4.5	6.0	4.0	8.5
Merged-chr5-41767667-4	chr5	41767223	41768223	+	831.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3503.0	NM_007524	12020.0	Mm.2530	NM_007524	ENSMUSG00000049691	Nkx3-2	Bapx1|NKX3.2|Nkx-3.2	NK3 homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120098904-4	chr9	120098426	120099426	+	831.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6793.0	NM_007720	12776.0	Mm.442098	NM_007720	ENSMUSG00000042262	Ccr8	C-C|C-C CKR-8|CC-CKR-8|CCR-8|CKR-8|Cmkbr8|mCCR8	chemokine (C-C motif) receptor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61073574-2	chr18	61073114	61074114	+	831.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_008809, intron 13 of 22)	intron (NM_008809, intron 13 of 22)	28464.0	NM_008809	18596.0	Mm.4146	NM_008809	ENSMUSG00000024620	Pdgfrb	AI528809|CD140b|PDGFR-1|Pdgfr	platelet derived growth factor receptor, beta polypeptide	protein-coding	0.5	7.5	0.0	0.0	0.5	1.0
Merged-chr17-34671685-4	chr17	34671156	34672156	+	831.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_031176, exon 2 of 33)	exon (NM_031176, exon 2 of 33)	1121.0	NM_031176	81877.0	Mm.290527	NM_031176	ENSMUSG00000033327	Tnxb	Tn-mhc|Tnx	tenascin XB	protein-coding	0.0	0.0	0.0	1.5	0.0	0.0
Merged-chr11-32537336-4	chr11	32536851	32537851	+	831.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	4085.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	7.0	41.5	29.0	22.5	38.5	40.0
Merged-chr12-4038805-6	chr12	4038291	4039291	+	831.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001082483, exon 1 of 23)	5' UTR (NM_001082483, exon 1 of 23)	124.0	NM_001082483	668212.0	Mm.210266	NM_001082483	ENSMUSG00000020658	Efr3b	AI852640|C030014M07Rik|mKIAA0953	EFR3 homolog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100675120-4	chr5	100674599	100675599	+	831.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027978)	promoter-TSS (NM_027978)	-843.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	7.5	1.5	4.0	8.5	17.0	2.5
Merged-chr13-101766683-2	chr13	101766183	101767183	+	831.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 1 of 15)	intron (NM_001077495, intron 1 of 15)	1534.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76332910-3	chr15	76332412	76333412	+	831.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010331, exon 6 of 12)	exon (NM_010331, exon 6 of 12)	1618.0	NM_010331	14731.0	Mm.5903	NM_010331	ENSMUSG00000022561	Gpaa1	C80044|mGAA1	GPI anchor attachment protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-116849033-3	chr10	116848522	116849522	+	831.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033333, intron 4 of 24)	intron (NM_001033333, intron 4 of 24)	47857.0	NM_001033333	237558.0	Mm.336386	NM_001033333	ENSMUSG00000034057	Myrfl	Gm239	myelin regulatory factor-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35444663-4	chr2	35444197	35445197	+	831.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	16752.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-16977737-3	chr11	16977235	16978235	+	831.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 9 of 9)	ORR1G|LTR|ERVL-MaLR	26325.0	NM_176982	319701.0	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	5.5	1.5	6.5	7.5	17.0	11.5
Merged-chr17-51041043-3	chr17	51040550	51041550	+	831.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 2 of 21)	intron (NM_028162, intron 2 of 21)	118328.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-89017988-3	chr11	89017495	89018495	+	831.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009546, exon 9 of 9)	3' UTR (NM_009546, exon 9 of 9)	18592.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	18.0	19.0	34.5	20.0	18.0	10.5
Merged-chr19-38929859-3	chr19	38929323	38930323	+	831.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-1167.0	NM_008234	15201.0	Mm.57223	NM_008234	ENSMUSG00000025001	Hells	AI323785|E130115I21Rik|LSH|Lysh|PASG|YFK8	helicase, lymphoid specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38978052-3	chr18	38977546	38978546	+	831.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15099.0	NM_001361073	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	1.0	1.5	0.0	3.5	0.0	0.0
Merged-chr15-103177230-4	chr15	103176733	103177733	+	831.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13949.0	NM_027885	71726.0	Mm.254820	NM_027885	ENSMUSG00000036061	Smug1	1200013B09Rik|A930006H09Rik|C85220	single-strand selective monofunctional uracil DNA glycosylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114144164-3	chr7	114143664	114144664	+	831.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-26383.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116683808-5	chr11	116683224	116684224	+	831.299988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009180, intron 5 of 8)	B1_Mur1|SINE|Alu	9127.0	NR_028570	100216538.0		NR_028570	ENSMUSG00000065094	Snord1a	snR38	small nucleolar RNA, C/D box 1A	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-54118561-4	chr10	54118092	54119092	+	831.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42670.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-23005836-4	chr2	23005320	23006320	+	831.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	MLTR25A|LTR|ERVK	34421.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28346042-2	chr7	28345542	28346542	+	831.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-4647.0	NM_013647	20055.0	Mm.702	NM_013647	ENSMUSG00000037563	Rps16	AA420385|AI317031	ribosomal protein S16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29289454-2	chr7	29288954	29289954	+	831.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_026731, exon 1 of 4)	exon (NM_026731, exon 1 of 4)	134.0	NM_026731	68458.0	Mm.2343	NM_026731	ENSMUSG00000037166	Ppp1r14a	1110001M11Rik|Cpi17	protein phosphatase 1, regulatory (inhibitor) subunit 14A	protein-coding	0.0	0.0	0.0	1.5	0.0	0.0
Merged-chr17-8842081-3	chr17	8841571	8842571	+	831.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011866, intron 1 of 21)	intron (NM_011866, intron 1 of 21)	-7914.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-28502321-4	chr13	28501814	28502814	+	831.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045054, intron 7 of 7)	intron (NR_045054, intron 7 of 7)	208559.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128796589-4	chr4	128796107	128797107	+	831.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081098, intron 1 of 8)	intron (NM_001081098, intron 1 of 8)	9505.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-74823685-2	chr18	74823151	74824151	+	831.25	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	44439.0	NM_177470	52538.0	Mm.245724	NM_177470	ENSMUSG00000036880	Acaa2	0610011L04Rik|AI255831|AI265397|D18Ertd240e	acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	protein-coding	1.5	0.0	1.0	4.0	0.0	2.0
Merged-chr9-56890015-2	chr9	56889515	56890515	+	831.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_139001, intron 3 of 9)	intron (NM_139001, intron 3 of 9)	24911.0	NM_139001	121021.0	Mm.41329	NM_139001	ENSMUSG00000032911	Cspg4	4732461B14Rik|AN2|NG2	chondroitin sulfate proteoglycan 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-14352275-4	chr16	14351788	14352788	+	831.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9270.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	5.0	26.5	21.0	11.5	33.0	22.5
Merged-chr12-86836043-3	chr12	86835503	86836503	+	831.233337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	48811.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120721705-6	chr11	120721384	120722384	+	831.222229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153545)	TTS (NM_153545)	416.0	NM_133223	170758.0	Mm.34008	NM_133223	ENSMUSG00000018012	Rac3	Rac1B	Rac family small GTPase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80035257-3	chr7	80034740	80035740	+	831.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	9012.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	10.0	10.0	2.5	2.5	20.5	4.5
Merged-chr10-80024392-2	chr10	80023892	80024892	+	831.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347074, intron 10 of 22)	intron (NM_001347074, intron 10 of 22)	4717.0	NM_027521	70719.0	Mm.243954	NM_027521	ENSMUSG00000035697	Arhgap45	6330406L22Rik|AW539505|Ha-1|Hmha1	Rho GTPase activating protein 45	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5714245-4	chr19	5713753	5714753	+	831.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114595, intron 11 of 17)	intron (NM_001114595, intron 11 of 17)	9782.0	NM_010609	16530.0	Mm.440033	NM_010609	ENSMUSG00000024936	Kcnk7	2310014G03Rik|Kcnk6|Kcnk8|Knot|Mlk3	potassium channel, subfamily K, member 7	protein-coding	19.5	42.5	33.5	22.5	26.5	26.5
Merged-chr3-95657326-4	chr3	95656818	95657818	+	831.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1403.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171841569-3	chr1	171841081	171842081	+	831.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289470, intron 2 of 8)	L1_Mur3|LINE|L1	1884.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	98.0	220.5	144.5	89.0	202.5	126.5
Merged-chr5-68048932-4	chr5	68048431	68049431	+	831.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001018019, intron 1 of 3)	intron (NM_001018019, intron 1 of 3)	17096.0	NM_001018019	433899.0	Mm.332422	NM_001018019	ENSMUSG00000068082	Grxcr1	Tg(Eno2-Gabrb3)0370Brll|pi|tde	glutaredoxin, cysteine rich 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76324683-2	chr15	76324183	76325183	+	831.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2714.0	NM_175399	109075.0	Mm.322752	NM_175399	ENSMUSG00000034259	Exosc4	1110039I09Rik|1500001N04Rik|Rrp41	exosome component 4	protein-coding	4.0	0.0	1.5	0.0	0.0	0.0
Merged-chr7-4139555-2	chr7	4139055	4140055	+	831.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_172736, exon 3 of 15)	exon (NM_172736, exon 3 of 15)	2499.0	NM_172736	232798.0	Mm.22831	NM_172736	ENSMUSG00000035545	Leng8	AW049671	leukocyte receptor cluster (LRC) member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77907136-2	chr10	77906636	77907636	+	831.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_138301)	TTS (NM_138301)	-4600.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125059621-3	chr5	125059135	125060135	+	831.144409	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011424, intron 17 of 46)	intron (NM_011424, intron 17 of 46)	56160.0	NM_028443	73121.0	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	0.5	15.0	5.0	1.5	1.5	1.0
Merged-chr1-192727210-3	chr1	192726699	192727699	+	831.138916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 5 of 11)	intron (NM_144881, intron 5 of 11)	44020.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	0.0	1.0	3.5	1.0	0.5	0.0
Merged-chr15-100457565-4	chr15	100457057	100458057	+	831.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11454.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	11.5	7.0	5.5	6.5	11.5	4.0
Merged-chr5-125270799-3	chr5	125270294	125271294	+	831.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70300.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46833552-3	chr11	46833045	46834045	+	831.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178759, intron 5 of 8)	MTC|LTR|ERVL-MaLR	22746.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	64.0	105.5	79.5	88.0	129.0	95.5
Merged-chr7-29162995-3	chr7	29162492	29163492	+	831.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_182927, exon 5 of 6)	exon (NM_182927, exon 5 of 6)	5655.0	NM_182927	101809.0	Mm.377262	NM_182927	ENSMUSG00000037239	Spred3	AW047143|D130060H24Rik|Spred-3	sprouty-related, EVH1 domain containing 3	protein-coding	0.0	0.0	0.0	1.5	0.0	0.0
Merged-chr11-89989129-4	chr11	89988680	89989680	+	831.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316372, intron 2 of 4)	intron (NM_001316372, intron 2 of 4)	13714.0	NM_008796	18559.0	Mm.5062	NM_008796	ENSMUSG00000020553	Pctp	PC-TP|StarD2	phosphatidylcholine transfer protein	protein-coding	1.5	7.5	1.0	1.5	0.0	2.5
Merged-chr18-78065038-2	chr18	78064538	78065538	+	831.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7770.0	NM_001101038	620235.0	Mm.35607	NM_001101038	ENSMUSG00000091055	Siglec15	Cd33l3|EG620235|SIGLEC-I	sialic acid binding Ig-like lectin 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4948166-4	chr18	4947644	4948644	+	831.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98445.0	NM_153153	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153342781-4	chr2	153342289	153343289	+	831.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040318, exon 2 of 2)	non-coding (NR_040318, exon 2 of 2)	3021.0	NR_040318	72326.0	Mm.400102	NR_040318	ENSMUSG00000073236	2500004C02Rik	-	RIKEN cDNA 2500004C02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-77272858-4	chr8	77272360	77273360	+	831.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 20 of 22)	intron (NM_030113, intron 20 of 22)	-244196.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97247964-4	chr15	97247453	97248453	+	831.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164563)	promoter-TSS (NM_001164563)	-666.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50075535-3	chr6	50075107	50076107	+	831.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34634.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	8.5	5.5	14.5	12.5	17.0	26.5
Merged-chr1-105996274-4	chr1	105995803	105996803	+	831.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122675, intron 1 of 12)	intron (NM_001122675, intron 1 of 12)	5897.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-15626325-4	chr6	15625835	15626835	+	831.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94326.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80178510-3	chr11	80178038	80179038	+	831.023804	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172133, exon 11 of 11)	3' UTR (NM_172133, exon 11 of 11)	-5334.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-149859415-2	chr1	149858915	149859915	+	831.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 13 of 17)	intron (NM_008869, intron 13 of 17)	63024.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57650003-1	chr9	57649503	57650503	+	831.0	f1_c57bl6.idr	intron (NM_001304761, intron 2 of 14)	B2_Mm2|SINE|B2	3628.0	NM_001304761	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97751741-3	chr3	97751248	97752248	+	831.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 17 of 46)	CpG	16266.0	NM_178080	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44761022-2	chr13	44760522	44761522	+	831.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205043, intron 1 of 17)	intron (NM_001205043, intron 1 of 17)	29751.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75097658-2	chr8	75097157	75098157	+	831.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010442, intron 3 of 4)	intron (NM_010442, intron 3 of 4)	4039.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.0	1.5	2.0	5.5	7.5	8.0
Merged-chr6-65587263-2	chr6	65586763	65587763	+	831.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CATATA)n|Simple_repeat|Simple_repeat	-3135.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-134690028-1	chr7	134689528	134690528	+	831.0	f1_balb.idr	intron (NM_001033420, intron 1 of 51)	MER44A|DNA|TcMar-Tigger	19341.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	10.5	22.0	20.5	15.0	37.0	12.0
Merged-chr15-12356126-1	chr15	12355626	12356626	+	831.0	f0_balb.idr	TTS (NM_001081064)	TTS (NM_001081064)	34630.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-106693220-2	chr5	106692720	106693720	+	831.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026856, intron 1 of 6)	intron (NM_026856, intron 1 of 6)	3610.0	NM_026856	52397.0	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	0.0	0.0	4.0	3.0	0.0	2.5
Merged-chr16-4767698-2	chr16	4767198	4768198	+	831.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001358082, exon 6 of 6)	3' UTR (NM_001358082, exon 6 of 6)	10752.0	NM_001357050	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9984123-4	chr3	9983615	9984615	+	831.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28470.0	NM_001272097	16592.0	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr5-142709858-2	chr5	142709358	142710358	+	831.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146257, intron 2 of 10)	ERVL-int|LTR|ERVL	7757.0	NM_146257	243328.0	Mm.125942	NM_146257	ENSMUSG00000050822	Slc29a4	ENT4|mPMAT	solute carrier family 29 (nucleoside transporters), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118700880-2	chr9	118700424	118701424	+	831.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 15 of 27)	intron (NM_133721, intron 15 of 27)	-10768.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	8.5	6.0	5.0	9.0	6.0	5.0
Merged-chr17-55956266-2	chr17	55955766	55956766	+	831.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_108021, exon 3 of 3)	non-coding (NR_108021, exon 3 of 3)	-2921.0	NM_028381	72886.0	Mm.22796	NM_028381	ENSMUSG00000003208	Ccdc94	2900016D05Rik|AI413813	coiled-coil domain containing 94	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69930237-2	chr11	69929737	69930737	+	831.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-5662.0	NM_016875	53422.0	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41165716-2	chr4	41165216	41166216	+	831.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026275, intron 1 of 4)	RLTR16|LTR|ERVK	29695.0	NM_026275	67615.0	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95945179-2	chr16	95944679	95945679	+	831.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-16102.0	NR_040484	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-129713228-2	chr5	129712728	129713728	+	831.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-2269.0	NM_001356956	66258.0	Mm.249809	NM_025450	ENSMUSG00000034211	Mrps17	1810006P02Rik|Mprs17	mitochondrial ribosomal protein S17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84906665-2	chr3	84906165	84907165	+	831.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177774, intron 3 of 12)	Lx7|LINE|L1	42520.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3709663-2	chr4	3709163	3710163	+	831.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	-5301.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	6.5	25.5	11.0	2.5	33.5	21.5
Merged-chr15-89359805-4	chr15	89359300	89360300	+	831.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001115132, intron 1 of 19)	intron (NM_001115132, intron 1 of 19)	4081.0	NM_001271601	52683.0	Mm.143167	NM_001115132	ENSMUSG00000008690	Ncaph2	-	non-SMC condensin II complex, subunit H2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140643546-2	chr5	140643046	140644046	+	831.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308040, intron 1 of 12)	intron (NM_001308040, intron 1 of 12)	5485.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117455695-2	chr10	117455195	117456195	+	831.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-8260.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-40609912-3	chr8	40609379	40610379	+	831.0	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_001040699, intron 1 of 13)	B3A|SINE|B2	24913.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	35.0	50.5	62.5	8.0	14.0	22.0
Merged-chr19-4048070-3	chr19	4047586	4048586	+	831.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5865.0	NM_181796	14869.0	Mm.441542	NM_181796	ENSMUSG00000038155	Gstp2	GSTpiA|Gst-3|Gst3	glutathione S-transferase, pi 2	protein-coding	3.0	1.0	0.5	0.0	1.0	0.5
Merged-chr4-32010993-1	chr4	32010493	32011493	+	831.0	f0_balb.idr	intron (NM_009316, intron 14 of 16)	intron (NM_009316, intron 14 of 16)	46886.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	6.5	0.0	2.0	9.0	1.5	3.0
Merged-chr9-85401967-2	chr9	85401483	85402483	+	831.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74833.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	15.5	16.0	8.0	10.0	1.0	11.0
Merged-chr15-78279618-2	chr15	78279118	78280118	+	831.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5231.0	NR_106137	102465776.0		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	4.0	1.5	3.0	0.0	0.0	4.5
Merged-chr6-39607066-2	chr6	39606566	39607566	+	831.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_139294, exon 22 of 22)	3' UTR (NM_139294, exon 22 of 22)	14501.0	NR_152450	68198.0	Mm.29415	NM_026612	ENSMUSG00000002416	Ndufb2	1810011O01Rik|8kDa|AGGG|AI325567|CI-AGGG	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128723787-2	chr4	128723287	128724287	+	831.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 9 of 14)	intron (NM_018774, intron 9 of 14)	-3784.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81951867-1	chr15	81951367	81952367	+	831.0	f1_c57bl6.idr	TTS (NM_145473)	TTS (NM_145473)	9063.0	NM_001282040	29858.0	Mm.18939	NM_013872	ENSMUSG00000022474	Pmm1	C77612	phosphomannomutase 1	protein-coding	0.0	0.0	0.0	6.0	0.0	0.0
Merged-chr15-24589808-2	chr15	24589308	24590308	+	831.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	823956.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16804871-2	chr7	16804371	16805371	+	831.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11018.0	NM_133789	97387.0	Mm.21612	NM_133789	ENSMUSG00000030374	Strn4	C80611|ZIN|zinedin	striatin, calmodulin binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40676736-2	chr19	40676236	40677236	+	831.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	16966.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-57550658-3	chr3	57550147	57551147	+	831.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133784, intron 2 of 6)	intron (NM_133784, intron 2 of 6)	25229.0	NM_133784	97064.0	Mm.405029	NM_133784	ENSMUSG00000027803	Wwtr1	2310058J06Rik|2610021I22Rik|C78399|Taz	WW domain containing transcription regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-21641413-2	chr3	21640913	21641913	+	831.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-435239.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-35666992-2	chr13	35666492	35667492	+	831.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009881, intron 1 of 9)	intron (NM_009881, intron 1 of 9)	7130.0	NM_009881	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	0.0	3.0	0.0	2.5	0.0	0.5
Merged-chr17-71306760-2	chr17	71306274	71307274	+	831.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	4237.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	6.5	13.0	4.5	7.0	3.5	3.0
Merged-chr9-100091372-1	chr9	100090872	100091872	+	831.0	f1_balb.idr	Intergenic	Intergenic	69072.0	NR_040763	108970.0	Mm.390215	NR_040763	ENSMUSG00000101584	4930519F24Rik	-	RIKEN cDNA 4930519F24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr9-110245164-2	chr9	110244664	110245664	+	831.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001166273, exon 1 of 5)	5' UTR (NM_001166273, exon 1 of 5)	1381.0	NM_013884	29873.0	Mm.38496	NM_013884	ENSMUSG00000032482	Cspg5	Caleb|Ngc	chondroitin sulfate proteoglycan 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133754968-1	chr4	133754468	133755468	+	831.0	f1_c57bl6.idr	Intergenic	Intergenic	-1357.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	9.0	22.0	18.0	9.5	25.5	15.0
Merged-chr17-88120820-2	chr17	88120320	88121320	+	831.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4692.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10495589-2	chr16	10495089	10496089	+	831.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302619, intron 2 of 19)	intron (NM_001302619, intron 2 of 19)	5808.0	NM_001243761	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112851784-2	chr12	112851284	112852284	+	831.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019925, exon 3 of 3)	3' UTR (NM_019925, exon 3 of 3)	9132.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40317892-2	chr9	40317392	40318392	+	831.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	3431.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53161043-2	chr18	53160543	53161543	+	831.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15249.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31017822-5	chr14	31017363	31018363	+	830.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153547, exon 2 of 15)	exon (NM_153547, exon 2 of 15)	1268.0	NM_153547	30877.0	Mm.88512	NM_153547	ENSMUSG00000042354	Gnl3	Ns	guanine nucleotide binding protein-like 3 (nucleolar)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-125519381-5	chr1	125518870	125519870	+	830.960022	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41225.0	NM_001356294	74150.0	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-125123451-4	chr4	125122964	125123964	+	830.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153159, intron 2 of 5)	intron (NM_153159, intron 2 of 5)	4417.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86438172-2	chr1	86437672	86438672	+	830.950012	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A1|DNA|hAT-Charlie	11843.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129640200-3	chr4	129639659	129640659	+	830.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005506, intron 1 of 9)	intron (NM_001005506, intron 1 of 9)	646.0	NM_001005506	109658.0	Mm.268863	NM_001005506	ENSMUSG00000053841	Txlna	2600010N21Rik|AI425952|AW209241|Il14|Txln	taxilin alpha	protein-coding	10.5	40.5	18.0	6.5	41.5	16.0
Merged-chr6-31088483-7	chr6	31088041	31089041	+	830.9404910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25448.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3203218-8	chr11	3202695	3203695	+	830.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001166549, exon 1 of 18)	5' UTR (NM_001166549, exon 1 of 18)	176.0	NM_001166549	74203.0	Mm.255649	NM_023743	ENSMUSG00000020454	Eif4enif1	2610509L04Rik|A930019J01Rik|AA410001|AU021239|Clast4|D11Ertd166e	eukaryotic translation initiation factor 4E nuclear import factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69092933-4	chr11	69092419	69093419	+	830.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009497)	TTS (NM_009497)	4391.0	NM_009497	22318.0	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|Vamp-2|sybII	vesicle-associated membrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167675361-2	chr2	167674861	167675861	+	830.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13554.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17830098-2	chr17	17829556	17830556	+	830.900024	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029539)	promoter-TSS (NR_029539)	-132.0	NR_029536	387230.0		NR_029536	ENSMUSG00000065396	Mir99b	Mirn99b|mmu-mir-99b	microRNA 99b	ncRNA	8.0	2.0	7.0	4.5	9.5	0.0
Merged-chr7-25731528-3	chr7	25731028	25732028	+	830.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144922, intron 10 of 14)	intron (NM_144922, intron 10 of 14)	-12475.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117718957-3	chr11	117718452	117719452	+	830.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 4 of 21)	intron (NM_198022, intron 4 of 21)	60696.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-11046263-3	chr18	11045765	11046765	+	830.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105023, intron 4 of 5)	MIR|SINE|MIR	-6245.0	NM_010258	14465.0	Mm.329287	NM_010258	ENSMUSG00000005836	Gata6	AA410133|GATA-6	GATA binding protein 6	protein-coding	1.0	4.0	0.0	0.0	0.0	0.0
Merged-chr13-40977812-4	chr13	40977298	40978298	+	830.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155347, intron 1 of 4)	intron (NR_155347, intron 1 of 4)	-23212.0	NM_026550	68083.0	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123831994-4	chr5	123831514	123832514	+	830.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33502.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	27.5	69.0	48.0	21.0	17.0	17.0
Merged-chr19-6665499-4	chr19	6665005	6666005	+	830.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-122435.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86666041-7	chr4	86665567	86666567	+	830.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007408, intron 3 of 7)	MTC|LTR|ERVL-MaLR	3992.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	6.5	11.0	14.5	7.0	9.5	16.5
Merged-chr8-46130580-2	chr8	46130080	46131080	+	830.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6434.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81314447-2	chr10	81313947	81314947	+	830.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 15 of 17)	MTD|LTR|ERVL-MaLR	-6656.0	NM_027381	70312.0	Mm.87628	NM_027381	ENSMUSG00000034889	Cactin	2510012J08Rik	cactin, spliceosome C complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106197706-2	chr9	106197246	106198246	+	830.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_026447, exon 3 of 10)	exon (NM_026447, exon 3 of 10)	1193.0	NM_198931	67905.0	Mm.23018	NM_026447	ENSMUSG00000020253	Ppm1m	2810423O19Rik|AW610647|C77250|PP2Ceta	protein phosphatase 1M	protein-coding	0.5	2.5	5.0	6.5	3.0	9.5
Merged-chr15-102692495-2	chr15	102691995	102692995	+	830.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20629.0	NR_030460	751542.0		NR_030460	ENSMUSG00000076009	Mir688	Mirn688|mmu-mir-688	microRNA 688	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148837222-3	chr5	148836731	148837731	+	830.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	59268.0	NR_131106	78015.0	Mm.243839	NR_131106	ENSMUSG00000085740	4930505K14Rik	-	RIKEN cDNA 4930505K14 gene	ncRNA	2.0	3.5	3.5	2.0	4.5	14.5
Merged-chr10-99633435-3	chr10	99632955	99633955	+	830.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038019, intron 1 of 2)	B4|SINE|B4	8465.0	NR_038018	100417125.0	Mm.391428	NR_038018	ENSMUSG00000112503	Gm18409	-	mediator of cell motility 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-125265217-3	chr10	125264733	125265733	+	830.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 3 of 5)	B3|SINE|B2	43583.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35580068-3	chr7	35579565	35580565	+	830.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145840, exon 1 of 1)	3' UTR (NM_145840, exon 1 of 1)	5517.0	NM_145840	243923.0	Mm.222680	NM_145840	ENSMUSG00000056043	Rgs9bp	R9AP|Rgs9-1bp	regulator of G-protein signalling 9 binding protein	protein-coding	2.0	0.0	7.5	0.0	0.0	8.0
Merged-chr19-30032448-4	chr19	30031952	30032952	+	830.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144873, intron 1 of 15)	intron (NM_144873, intron 1 of 15)	1939.0	NM_144873	109113.0	Mm.313364	NM_144873	ENSMUSG00000024817	Uhrf2	2310065A22Rik|AI426270|AW214556|D130071B19Rik|Nirf	ubiquitin-like, containing PHD and RING finger domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78245657-5	chr15	78245120	78246120	+	830.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008677, intron 1 of 9)	intron (NM_008677, intron 1 of 9)	809.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	116.5	263.5	175.5	80.0	242.0	183.5
Merged-chr10-128913419-4	chr10	128912935	128913935	+	830.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001282966)	TTS (NM_001282966)	3569.0	NM_007653	12512.0	Mm.371552	NM_007653	ENSMUSG00000025351	Cd63	C75951|ME491|Tspan30	CD63 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-75625758-3	chr9	75625285	75626285	+	830.755554	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027309)	promoter-TSS (NM_027309)	53.0	NM_027309	70082.0	Mm.19119	NM_027309	ENSMUSG00000032184	Lysmd2	2210402C18Rik|AV033872|AW538442	LysM, putative peptidoglycan-binding, domain containing 2	protein-coding	0.0	1.0	0.0	0.0	0.0	2.0
Merged-chr9-44182489-4	chr9	44181972	44182972	+	830.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 2 of 15)	B3|SINE|B2	47814.0	NM_001359530	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116256321-4	chr3	116255816	116256816	+	830.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2832.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97140222-4	chr15	97139720	97140720	+	830.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	27024.0	NR_155278	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-33721888-4	chr5	33721395	33722395	+	830.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163217)	promoter-TSS (NM_001163217)	171.0	NM_001163215	14184.0	Mm.6904	NM_008010	ENSMUSG00000054252	Fgfr3	CD333|FR3|Fgfr-3|Flg-2|HBGFR|Mfr3|sam3	fibroblast growth factor receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-179832959-4	chr1	179832496	179833496	+	830.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-28981.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70838014-2	chr9	70837514	70838514	+	830.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	96794.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45126547-2	chr7	45126047	45127047	+	830.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_000003)	promoter-TSS (NR_000003)	-112.0	NR_000003	27211.0		NR_000003	ENSMUSG00000065818	Snord35a	Rnu35a|U35|U35A	small nucleolar RNA, C/D box 35A	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164706217-4	chr2	164705728	164706728	+	830.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7727.0	NM_030058	78239.0	Mm.160060	NM_030058	ENSMUSG00000017310	Spint4	9230105I15Rik	serine protease inhibitor, Kunitz type 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92944045-4	chr16	92943533	92944533	+	830.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117959.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-146524206-2	chr4	146523706	146524706	+	830.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_045468, intron 2 of 2)	RMER17B2|LTR|ERVK	9286.0	NM_001243139	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67608997-3	chr5	67608463	67609463	+	830.744446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033415, intron 1 of 1)	intron (NM_001033415, intron 1 of 1)	1080.0	NM_001033415	330096.0	Mm.442747	NM_001033415	ENSMUSG00000050010	Shisa3	D830007B15Rik	shisa family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118609295-4	chr10	118608777	118609777	+	830.729187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52752.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	12.0	12.5	1.0	0.0	0.0	0.0
Merged-chr10-75883373-4	chr10	75882883	75883883	+	830.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10015.0	NR_152573	70377.0	Mm.275878	NM_024440	ENSMUSG00000009092	Derl3	1810006I20Rik|1810063P04Rik|IZP6|derlin-3	Der1-like domain family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-30427551-4	chr15	30427022	30428022	+	830.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 2 of 21)	intron (NM_001355502, intron 2 of 21)	254929.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65742270-7	chr18	65741799	65742799	+	830.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177028, exon 11 of 15)	exon (NM_177028, exon 11 of 15)	44031.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	8.0	13.0	10.5	4.0	4.5	32.0
Merged-chr6-57745648-3	chr6	57745139	57746139	+	830.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43184.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-103338707-8	chr12	103338182	103339182	+	830.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 2 of 9)	intron (NM_023049, intron 2 of 9)	17319.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-110382734-3	chr13	110382282	110383282	+	830.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12262.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	1.5	0.0	1.0	1.5	0.0	1.0
Merged-chr7-96999124-4	chr7	96998617	96999617	+	830.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153591, intron 5 of 13)	L1Md_F2|LINE|L1	47590.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	0.0	6.5	5.0	0.0	7.0	5.0
Merged-chr9-7714281-3	chr9	7713797	7714797	+	830.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18666.0	NR_126562	102722.0	Mm.334941	NR_126562	ENSMUSG00000086381	AV064505	-	expressed sequence AV064505	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65931567-1	chr3	65931067	65932067	+	830.666687	f1_balb.idr	Intergenic	RLTR11A2|LTR|ERVK	26682.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	10.5	3.0	0.5	10.0	3.0	0.5
Merged-chr1-89466529-3	chr1	89466007	89467007	+	830.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	MTEa|LTR|ERVL-MaLR	11696.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139060598-3	chr5	139060083	139061083	+	830.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359099, intron 6 of 10)	intron (NM_001359099, intron 6 of 10)	-65630.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39067395-3	chr6	39066907	39067907	+	830.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040523, intron 1 of 3)	intron (NR_040523, intron 1 of 3)	179.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-108343240-3	chr11	108342664	108343664	+	830.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 1 of 16)	CpG	724.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120053796-1	chr4	120053296	120054296	+	830.666687	f0_c57.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-107410.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95412716-2	chr11	95412216	95413216	+	830.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1367.0	NM_025287	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	5.0	3.0	0.5	5.0	3.5	1.5
Merged-chr17-5483764-2	chr17	5483264	5484264	+	830.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073378)	promoter-TSS (NR_073378)	-695.0	NR_073378	666919.0		NR_073378		Gm8363	EG666919	non-SMC condensin II complex, subunit H2 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-108670098-2	chr5	108669598	108670598	+	830.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_174870, exon 3 of 3)	3' UTR (NM_174870, exon 3 of 3)	4698.0	NM_001310692	231583.0	Mm.440571	NM_174870	ENSMUSG00000046959	Slc26a1	Sat1	solute carrier family 26 (sulfate transporter), member 1	protein-coding	95.5	149.5	137.0	103.0	132.0	113.5
Merged-chr14-30876984-4	chr14	30876490	30877490	+	830.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028839, exon 8 of 8)	3' UTR (NM_028839, exon 8 of 8)	-2267.0	NM_181390	66175.0	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	19.5	31.0	30.0	26.5	63.5	45.0
Merged-chr8-83260597-4	chr8	83260094	83261094	+	830.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111304, intron 15 of 20)	intron (NM_001111304, intron 15 of 20)	-29754.0	NM_009463	22227.0	Mm.4177	NM_009463	ENSMUSG00000031710	Ucp1	AI385626|Slc25a7|Ucp	uncoupling protein 1 (mitochondrial, proton carrier)	protein-coding	0.0	12.0	0.5	5.0	1.5	0.0
Merged-chr18-4171889-3	chr18	4171383	4172383	+	830.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026092, intron 3 of 4)	intron (NM_026092, intron 3 of 4)	6051.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-77393692-3	chr16	77393191	77394191	+	830.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015543, intron 2 of 4)	intron (NR_015543, intron 2 of 4)	64363.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152671069-6	chr2	152670569	152671569	+	830.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010376, intron 1 of 11)	intron (NM_010376, intron 1 of 11)	1608.0	NM_001159552	14950.0	Mm.277327	NM_010376	ENSMUSG00000019188	H13	1200006O09Rik|4930443L17Rik|5031424B04Rik|AV020344|H-13|Hm13|PSL3|Spp	histocompatibility 13	protein-coding	12.0	28.0	18.0	7.0	9.0	12.5
Merged-chr18-61746855-3	chr18	61746288	61747288	+	830.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178928, exon 9 of 19)	exon (NM_178928, exon 9 of 19)	20398.0	NR_029432	68982.0	Mm.441992	NR_029432	ENSMUSG00000098702	1500015A07Rik	-	RIKEN cDNA 1500015A07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-73367920-4	chr6	73367517	73368517	+	830.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	101650.0	NM_025737	66740.0	Mm.440760	NM_025737	ENSMUSG00000056197	4931417E11Rik	-	RIKEN cDNA 4931417E11 gene	protein-coding	0.0	9.0	0.0	0.0	0.0	0.0
Merged-chr8-85038024-5	chr8	85037451	85038451	+	830.5644530000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122843, intron 1 of 24)	CpG	783.0	NM_001122843	212999.0	Mm.220357	NM_145390	ENSMUSG00000031691	Tnpo2	1110034O24Rik|AA414969|AI464345|AI852433|IPO3|Knpb2b|Kpnb2b|TRN2	transportin 2 (importin 3, karyopherin beta 2b)	protein-coding	3.5	0.5	1.0	6.0	0.5	5.0
Merged-chr18-52559074-4	chr18	52558591	52559591	+	830.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29224.0	NM_001286182	16948.0	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	0.0	0.0	2.0	0.0	10.0	1.0
Merged-chr16-32795365-4	chr16	32794862	32795862	+	830.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145874, intron 1 of 3)	intron (NM_001145874, intron 1 of 3)	2073.0	NM_146071	224116.0	Mm.153301	NM_146071	ENSMUSG00000035638	Muc20	BC026367	mucin 20	protein-coding	0.0	2.5	1.5	2.5	0.0	1.5
Merged-chr8-61894214-4	chr8	61893727	61894727	+	830.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 1 of 21)	intron (NM_001293772, intron 1 of 21)	8463.0	NM_001081390	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102340540-4	chr12	102340005	102341005	+	830.5059809999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 3 of 9)	intron (NM_177620, intron 3 of 9)	56864.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	19.5	29.0	40.0	20.0	31.5	20.5
Merged-chr10-128056500-2	chr10	128056000	128057000	+	830.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2482.0	NM_019766	56351.0	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-90969507-2	chr10	90969007	90970007	+	830.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001177397, exon 12 of 12)	3' UTR (NM_001177397, exon 12 of 12)	113236.0	NM_001042558	11783.0	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117494731-2	chr4	117494231	117495231	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025739, intron 1 of 14)	CpG	2321.0	NM_025739	66743.0	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	9.0	0.0	1.0	0.0	1.5	0.0
Merged-chr5-110396769-2	chr5	110396269	110397269	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142642, intron 4 of 18)	intron (NM_001142642, intron 4 of 18)	-9642.0	NM_028596	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	1.0	10.0	2.0	1.0	10.0	2.0
Merged-chr11-120625417-2	chr11	120624917	120625917	+	830.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105901)	promoter-TSS (NR_105901)	-415.0	NM_153056	209011.0	Mm.292957	NM_153056	ENSMUSG00000025138	Sirt7	-	sirtuin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99876469-2	chr15	99875969	99876969	+	830.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1013.0	NM_001113545	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114720859-2	chr11	114720359	114721359	+	830.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_053273, exon 14 of 14)	3' UTR (NM_053273, exon 14 of 14)	-6553.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127511293-2	chr10	127510793	127511793	+	830.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3646.0	NM_001098789	407790.0	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr6-124508578-4	chr6	124508090	124509090	+	830.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_181344, exon 6 of 6)	exon (NM_181344, exon 6 of 6)	-4031.0	NM_023143	50909.0	Mm.333375	NM_023143	ENSMUSG00000055172	C1ra	AI132558|C1r|mC1rA	complement component 1, r subcomponent A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132793264-2	chr4	132792764	132793764	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033308, intron 1 of 5)	ID_B1|SINE|B4	3100.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-88710577-2	chr9	88710077	88711077	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359992, intron 2 of 2)	MLTR14|LTR|ERV1	9010.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160207559-2	chr2	160207059	160208059	+	830.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	119935.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131293773-2	chr1	131293274	131294274	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 21 of 22)	intron (NM_001081011, intron 21 of 22)	-14211.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	8.5	10.0	16.0	3.5	4.0	15.0
Merged-chr17-24693552-2	chr17	24693052	24694052	+	830.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023040, exon 3 of 3)	3' UTR (NM_023040, exon 3 of 3)	2604.0	NM_023040	11692.0	Mm.28124	NM_023040	ENSMUSG00000040888	Gfer	Alr|ERV1	growth factor, augmenter of liver regeneration	protein-coding	0.5	10.5	5.5	0.0	11.0	2.5
Merged-chr3-84036251-2	chr3	84035751	84036751	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172681, intron 2 of 34)	intron (NM_172681, intron 2 of 34)	3910.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-93820901-4	chr11	93820423	93821423	+	830.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64843.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	13.0	20.0	7.5	2.5	3.0	5.0
Merged-chr1-172081984-2	chr1	172081484	172082484	+	830.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009938)	promoter-TSS (NM_009938)	-545.0	NM_009938	12847.0	Mm.30041	NM_009938	ENSMUSG00000026553	Copa	AU040324|xenin	coatomer protein complex subunit alpha	protein-coding	47.5	141.0	104.5	51.5	122.5	96.5
Merged-chr12-117483134-2	chr12	117482634	117483634	+	830.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33345.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34527435-2	chr5	34526935	34527935	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	1651.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120113976-2	chr9	120113476	120114476	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144793, intron 1 of 6)	intron (NM_144793, intron 1 of 6)	3577.0	NM_144793	208638.0	Mm.236656	NM_144793	ENSMUSG00000032519	Slc25a38	AV019094|BC010801|appoptosin	solute carrier family 25, member 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-59053722-2	chr5	59053222	59054222	+	830.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-600724.0	NR_046190	78163.0	Mm.243828	NR_046190	ENSMUSG00000105234	4930459L07Rik	-	RIKEN cDNA 4930459L07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93915100-2	chr16	93914600	93915600	+	830.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	14467.0	NM_001165925	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	57.5	103.5	106.5	21.0	58.0	34.5
Merged-chr3-82799897-3	chr3	82799408	82800408	+	830.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76575.0	NM_001277170	633285.0	Mm.265114	NM_001146328	ENSMUSG00000033882	Rbm46	EG633285|Gm761	RNA binding motif protein 46	protein-coding	3.5	0.0	3.0	0.0	6.0	14.5
Merged-chr17-28406683-2	chr17	28406183	28407183	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 8 of 10)	intron (NM_010220, intron 8 of 10)	-41467.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111875977-3	chr8	111875486	111876486	+	830.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025781, intron 1 of 2)	intron (NM_025781, intron 1 of 2)	689.0	NM_025781	66817.0	Mm.345350	NM_025781	ENSMUSG00000031953	Tmem170	9030409E16Rik|AA403674|D8Bwg1414e|Tmem170a	transmembrane protein 170	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3495499-2	chr5	3494999	3495999	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	B3A|SINE|B2	-48334.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102138546-4	chr11	102138048	102139048	+	830.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6965.0	NM_145829	217214.0	Mm.31686	NM_145829	ENSMUSG00000048217	Nags	1700120E20Rik|argA	N-acetylglutamate synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120135632-2	chr2	120135132	120136132	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 2 of 5)	L1MA4A|LINE|L1	18943.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36088984-2	chr1	36088447	36089447	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	RSINE1|SINE|B4	20547.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10893566-2	chr19	10893066	10894066	+	830.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1665.0	NM_134129	28000.0	Mm.491104	NM_134129	ENSMUSG00000024735	Prpf19	AA617263|AL024362|D19Wsu55e|NMP200|PSO4|Prp19|Snev	pre-mRNA processing factor 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-24479726-2	chr8	24479226	24480226	+	830.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	5260.0	NR_035483									0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80406083-2	chr10	80405583	80406583	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025650, intron 1 of 2)	intron (NM_025650, intron 1 of 2)	738.0	NM_025650	66594.0	Mm.379119	NM_025650	ENSMUSG00000020163	Uqcr11	0710008D09Rik|AL022707|Uqcr	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46314047-2	chr11	46313547	46314547	+	830.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1188.0	NM_001252459	76884.0	Mm.154358	NM_133769	ENSMUSG00000020340	Cyfip2	1500004I01Rik|6430511D02Rik|AA930218|AU022376|Pir121|mKIAA1168	cytoplasmic FMR1 interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36121008-2	chr17	36120539	36121539	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010395, intron 3 of 12)	intron (NM_010395, intron 3 of 12)	396.0	NM_010395	15024.0	Mm.426031	NM_010395	ENSMUSG00000079491	H2-T10	H-2T10	histocompatibility 2, T region locus 10	protein-coding	12.0	48.0	19.0	9.0	12.0	3.5
Merged-chr15-38081987-2	chr15	38081487	38082487	+	830.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2-int|LTR|ERVL-MaLR	-3133.0	NM_001081359	70790.0	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79914488-2	chr10	79913988	79914988	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177994, intron 1 of 7)	intron (NM_177994, intron 1 of 7)	2442.0	NM_177994	109284.0	Mm.300416	NM_177994	ENSMUSG00000035781	R3hdm4	AI503502|C030046I01Rik	R3H domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-112986176-2	chr2	112985676	112986676	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001319156, intron 3 of 103)	RMER17B|LTR|ERVK	230907.0	NM_001319156	20192.0	Mm.436657	NM_177652	ENSMUSG00000057378	Ryr3	AI851294|C230090H21|RYR-3	ryanodine receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21034027-2	chr9	21033527	21034527	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008319, intron 3 of 10)	B2_Mm1t|SINE|B2	-1699.0	NR_035438	100316681.0		NR_035438	ENSMUSG00000084663	Mir1900	Mirn1900|mmu-mir-1900	microRNA 1900	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117450420-2	chr8	117449920	117450920	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 14 of 20)	URR1A|DNA|hAT-Charlie	-2603.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-113165351-2	chr11	113164904	113165904	+	830.5	f0_c57.idr|f1_balb.idr	intron (NR_015556, intron 1 of 2)	intron (NR_015556, intron 1 of 2)	36434.0	NR_015556	72386.0	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	0.0	0.0	2.0	1.5	0.0	0.0
Merged-chr11-60208659-2	chr11	60208159	60209159	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358315, intron 1 of 18)	intron (NM_001358315, intron 1 of 18)	1812.0	NM_001358314	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111562321-2	chr9	111561839	111562839	+	830.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001324546, exon 10 of 10)	3' UTR (NM_001324546, exon 10 of 10)	123258.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	19.0	21.0	27.5	9.5	32.5	30.5
Merged-chr4-133238133-4	chr4	133237686	133238686	+	830.483337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2632.0	NM_016693	53608.0	Mm.36640	NM_016693	ENSMUSG00000028862	Map3k6	Ask2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding	0.0	0.0	4.5	0.0	0.0	6.5
Merged-chr13-89543196-4	chr13	89542706	89543706	+	830.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013500, intron 1 of 4)	intron (NM_013500, intron 1 of 4)	2570.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	1.0	3.0	3.0	0.0	0.0	0.0
Merged-chr17-24173602-4	chr17	24173105	24174105	+	830.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3927.0	NM_001361531	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	3.5	18.5	23.5	6.5	18.0	7.5
Merged-chr3-121819988-4	chr3	121819479	121820479	+	830.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4677.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76519049-4	chr12	76518548	76519548	+	830.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14164.0	NR_039597	100628604.0		NR_039597	ENSMUSG00000092738	Mir5135	mir-5135|mmu-mir-5135|mu-mir-5135	microRNA 5135	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73106535-4	chr14	73106041	73107041	+	830.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35969.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-76275170-4	chr5	76274667	76275667	+	830.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007715, intron 2 of 22)	intron (NM_007715, intron 2 of 22)	28335.0	NM_001305222	12753.0	Mm.3552	NM_007715	ENSMUSG00000029238	Clock	5330400M04Rik|KAT13D	circadian locomotor output cycles kaput	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55473957-4	chr1	55473460	55474460	+	830.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	ORR1E|LTR|ERVL-MaLR	68014.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	0.0	2.0	0.0	1.0	0.5	5.0
Merged-chr7-144942363-5	chr7	144941819	144942819	+	830.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2394.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	65.5	119.0	81.5	43.5	111.5	55.5
Merged-chr10-127534617-7	chr10	127534129	127535129	+	830.392883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183297)	promoter-TSS (NM_183297)	-70.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.0	0.0	0.0	0.0	1.0	4.0
Merged-chr19-10258534-3	chr19	10258030	10259030	+	830.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 9 of 19)	intron (NM_198114, intron 9 of 19)	-17782.0	NM_001033481	225908.0	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45408531-4	chr9	45408027	45409027	+	830.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_052823, intron 3 of 5)	intron (NM_052823, intron 3 of 5)	2450.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	8.5	1.0	1.5	2.5	0.0	0.5
Merged-chr4-129365340-4	chr4	129364838	129365838	+	830.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028603, intron 2 of 4)	ID4_|SINE|ID	12690.0	NM_028603	73680.0	Mm.32997	NM_028603	ENSMUSG00000028807	Zbtb8a	2410081M15Rik|AI480941	zinc finger and BTB domain containing 8a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148165094-4	chr4	148164612	148165612	+	830.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_176848, exon 4 of 6)	exon (NM_176848, exon 4 of 6)	4444.0	NM_176848	230904.0	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80144022-4	chr7	80143533	80144533	+	830.354126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28683.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	21.5	49.0	52.0	13.0	9.0	20.0
Merged-chr1-165780693-4	chr1	165780246	165781246	+	830.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7935.0	NM_001113393	12503.0	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-68796690-2	chr2	68796192	68797192	+	830.333374	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-64749.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106460767-2	chr11	106460267	106461267	+	830.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 1 of 21)	intron (NM_023913, intron 1 of 21)	27029.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-58036252-2	chr2	58035752	58036752	+	830.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172855, intron 9 of 9)	MTE2a|LTR|ERVL-MaLR	16500.0	NM_029972	77767.0	Mm.91712	NM_029972	ENSMUSG00000026830	Ermn	A330104H05Rik|AI854460|ermin|mKIAA1189	ermin, ERM-like protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62732869-2	chr11	62732369	62733369	+	830.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3776.0	NM_133208	170740.0	Mm.339982	NM_133208	ENSMUSG00000005267	Zfp287	B230333C16Rik|SKAT-2|Skat2|Znf287|mszf16|mszf74	zinc finger protein 287	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-40321223-2	chr8	40320731	40321731	+	830.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_030110, intron 1 of 14)	ORR1E|LTR|ERVL-MaLR	13180.0	NM_030110	78506.0	Mm.169893	NM_030110	ENSMUSG00000039478	Micu3	2900075B16Rik|Efha2	mitochondrial calcium uptake family, member 3	protein-coding	7.5	12.0	12.0	4.5	2.0	2.0
Merged-chr10-93911560-3	chr10	93911052	93912052	+	830.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20350.0	NM_019648	56307.0	Mm.289329	NM_019648	ENSMUSG00000036112	Metap2	4930584B20Rik|A930035J23Rik|AI047573|AL024412|AU014659|Amp2|Mnpep|p67|p67eIF2	methionine aminopeptidase 2	protein-coding	3.0	1.5	9.5	0.0	0.0	2.0
Merged-chr14-54765625-3	chr14	54765164	54766164	+	830.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	16222.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	5.0	10.5	7.5	30.0	45.5	43.0
Merged-chr2-94436237-3	chr2	94435733	94436733	+	830.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007466, intron 1 of 13)	(CA)n|Simple_repeat|Simple_repeat	1953.0	NM_007466	11800.0	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding	0.0	2.0	4.0	0.0	0.0	0.0
Merged-chr17-8232260-3	chr17	8231768	8232768	+	830.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3775.0	NM_001190333	12458.0	Mm.8007	NM_009835	ENSMUSG00000040899	Ccr6	CC-CKR-6|CCR-6|Cmkbr6|KY411	chemokine (C-C motif) receptor 6	protein-coding	0.0	2.5	0.0	1.0	3.0	0.0
Merged-chr16-91408104-3	chr16	91407564	91408564	+	830.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008349, intron 2 of 6)	intron (NM_008349, intron 2 of 6)	1829.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111527389-2	chr8	111526889	111527889	+	830.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5282.0	NM_176923	319481.0	Mm.247294	NM_176923	ENSMUSG00000031959	Wdr59	5430401O09Rik|Cdw12	WD repeat domain 59	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-95653726-3	chr1	95653196	95654196	+	830.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009183, exon 3 of 5)	exon (NM_009183, exon 3 of 5)	13898.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55901822-3	chr19	55901318	55902318	+	830.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142924, intron 1 of 11)	intron (NM_001142924, intron 1 of 11)	6497.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-24715356-3	chr8	24714858	24715858	+	830.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324489, intron 5 of 21)	intron (NM_001324489, intron 5 of 21)	10494.0	NM_009619	11497.0	Mm.5168	NM_009619	ENSMUSG00000031553	Adam3	Cyrn1|Taz83|tMDC	a disintegrin and metallopeptidase domain 3 (cyritestin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145196761-4	chr4	145196258	145197258	+	830.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1753.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-10551120-3	chr10	10550625	10551625	+	830.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026405, intron 1 of 2)	intron (NM_026405, intron 1 of 2)	7082.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20290617-3	chr10	20290128	20291128	+	830.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7060.0	NR_105840	102466647.0		NR_105840	ENSMUSG00000098887	Mir6413	Gm27432|mmu-mir-6413	microRNA 6413	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113226703-3	chr5	113226194	113227194	+	830.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033428)	promoter-TSS (NM_001033428)	-215.0	NM_001033428	333048.0	Mm.332586	NM_001033428	ENSMUSG00000066964	Tmem211	Gm854	transmembrane protein 211	protein-coding	0.0	1.0	1.5	0.0	0.0	1.0
Merged-chr7-101302782-3	chr7	101302292	101303292	+	830.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111111)	promoter-TSS (NM_001111111)	-704.0	NR_152152	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148675243-4	chr4	148674722	148675722	+	830.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31905.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	19.0	26.5	26.0	3.5	3.0	10.5
Merged-chr15-100637133-8	chr15	100636582	100637582	+	830.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174992)	promoter-TSS (NM_174992)	-142.0	NM_001033872	207818.0	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127644700-3	chr10	127644210	127645210	+	830.277771	f1_balb.idr|f1_c57bl6.idr	intron (NM_009284, intron 1 of 21)	intron (NM_009284, intron 1 of 21)	1724.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	50.0	118.5	52.0	44.0	60.0	53.0
Merged-chr17-53684148-4	chr17	53683614	53684614	+	830.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028232, intron 4 of 8)	intron (NM_028232, intron 4 of 8)	5201.0	NM_028232	72415.0	Mm.153202	NM_028232	ENSMUSG00000023940	Sgo1	3300001M08Rik|C81037|Sgol1	shugoshin 1	protein-coding	9.5	4.0	5.5	0.0	1.0	0.0
Merged-chr16-91828510-2	chr16	91828010	91829010	+	830.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001110276, exon 16 of 16)	3' UTR (NM_001110276, exon 16 of 16)	99139.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-48877178-2	chr13	48876678	48877678	+	830.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6293.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-4611546-3	chr10	4611045	4612045	+	830.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302532)	promoter-TSS (NM_001302532)	-444.0	NM_001302532	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-5274542-4	chr9	5274046	5275046	+	830.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-23971.0	NM_009807	12362.0	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99394930-2	chr12	99394430	99395430	+	830.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 1 of 5)	intron (NM_183186, intron 1 of 5)	55144.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-63826112-2	chr5	63825598	63826598	+	830.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	13603.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	19.5	53.5	51.5	21.5	62.0	62.0
Merged-chr2-4570864-3	chr2	4570369	4571369	+	830.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 2 of 11)	intron (NM_001177844, intron 2 of 11)	11115.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23551103-3	chr17	23550600	23551600	+	830.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126484, intron 1 of 1)	intron (NR_126484, intron 1 of 1)	301.0	NR_126484	320020.0	Mm.445111	NR_126484		6330415G19Rik	-	RIKEN cDNA 6330415G19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93615552-3	chr16	93615010	93616010	+	830.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7673.0	NM_007620	12408.0	Mm.26940	NM_007620	ENSMUSG00000051483	Cbr1	AW261796|CR|Cbr	carbonyl reductase 1	protein-coding	0.0	4.5	0.0	0.0	0.0	0.0
Merged-chr3-135607316-4	chr3	135606801	135607801	+	830.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 13 of 24)	intron (NM_008689, intron 13 of 24)	84246.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.5	2.5	1.5	0.5	2.5	1.5
Merged-chr6-59214142-6	chr6	59213654	59214654	+	830.194458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5284.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-90558832-3	chr11	90558312	90559312	+	830.1777950000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011505, intron 12 of 17)	intron (NM_011505, intron 12 of 17)	79296.0	NM_011505	20913.0	Mm.207203	NM_011505	ENSMUSG00000020546	Stxbp4	6030470M02Rik|Synip	syntaxin binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30362545-3	chr14	30362041	30363041	+	830.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028981, intron 1 of 46)	B4|SINE|B4	-9055.0	NM_001083616	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	0.0	0.5	2.5	0.0	0.5	2.5
Merged-chr11-118171410-2	chr11	118170910	118171910	+	830.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 10 of 12)	intron (NM_001112700, intron 10 of 12)	41332.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126751623-3	chr8	126751136	126752136	+	830.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97384.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	11.5	8.5	4.0	8.5	0.0	1.0
Merged-chr17-10701418-2	chr17	10700918	10701918	+	830.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	138773.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97080364-3	chr7	97079800	97080800	+	830.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1451.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	1.0	3.0	3.0	2.0	2.5	3.5
Merged-chr5-24603135-4	chr5	24602623	24603623	+	830.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1121.0	NM_025891	66993.0	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117195345-2	chr11	117194845	117195845	+	830.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4316.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99383240-2	chr15	99382740	99383740	+	830.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-9707.0	NM_026669	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-69574120-2	chr18	69573620	69574620	+	830.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	227960.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-64809951-4	chr14	64809460	64810460	+	830.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	139897.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72144357-2	chr6	72143857	72144857	+	830.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 4 of 6)	intron (NM_001035228, intron 4 of 6)	-21160.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44596195-4	chr10	44595704	44596704	+	830.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137456.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41136529-4	chr4	41136027	41137027	+	830.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026275, intron 1 of 4)	intron (NM_026275, intron 1 of 4)	506.0	NM_026275	67615.0	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-99465027-4	chr11	99464525	99465525	+	830.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26872.0	NM_023256	66809.0	Mm.28042	NM_023256	ENSMUSG00000035775	Krt20	9030623C06Rik|Ck-20|Ck20|K20|Krt21	keratin 20	protein-coding	4.5	9.0	3.5	0.0	0.0	0.0
Merged-chr5-149006297-4	chr5	149005729	149006729	+	830.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040429)	promoter-TSS (NR_040429)	-733.0	NR_040429	100503307.0	Mm.188008	NR_040429	ENSMUSG00000086610	Gm15408	-	predicted gene 15408	ncRNA	30.0	33.0	23.5	26.0	18.5	28.5
Merged-chr11-114679239-2	chr11	114678739	114679739	+	830.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	PB1|SINE|Alu	3771.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132203994-3	chr2	132203492	132204492	+	830.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	43796.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-59350742-3	chr19	59350208	59351208	+	830.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4928.0	NM_001033222	107368.0	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165901247-3	chr2	165900748	165901748	+	830.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-16410.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	48.0	48.5	60.5	26.5	39.5	50.5
Merged-chr17-50237532-4	chr17	50237033	50238033	+	830.104187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1675.0	NR_131975	446210.0	Mm.378184	NM_001004437	ENSMUSG00000067103	AY702103	STDP2	cDNA sequence AY702103	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98929169-4	chr13	98928644	98929644	+	830.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2760.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	5.0	2.5	0.5	5.0	2.5	0.5
Merged-chr4-105496347-3	chr4	105495845	105496845	+	830.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	338998.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	19.0	11.0	19.5	0.0	15.0	11.5
Merged-chr6-36989587-3	chr6	36989081	36990081	+	830.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 20 of 32)	intron (NM_001347104, intron 20 of 32)	-179402.0	NM_008973	19242.0	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32341353-4	chr11	32340899	32341899	+	830.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-6412.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30795132-4	chr7	30794625	30795625	+	830.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7220.0	NM_001033131	64661.0	Mm.268157	NM_001033131	ENSMUSG00000074199	Krtdap	Kdap|sk221	keratinocyte differentiation associated protein	protein-coding	3.5	0.0	0.0	1.5	0.0	0.0
Merged-chr2-168574092-3	chr2	168573605	168574605	+	830.077759	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291169, intron 1 of 10)	intron (NM_001291169, intron 1 of 10)	16260.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	1.0	1.5	0.5	0.0	3.0	2.5
Merged-chr13-52581096-5	chr13	52580610	52581610	+	830.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2327.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98691030-3	chr7	98690530	98691530	+	830.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_144495, exon 1 of 1)	non-coding (NR_144495, exon 1 of 1)	11898.0	NR_144495	100040769.0	Mm.126401	NR_144495		Gm15506	-	predicted gene 15506	ncRNA	0.0	7.5	22.5	6.0	5.5	5.5
Merged-chr14-122603350-3	chr14	122602851	122603851	+	830.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 6 of 24)	intron (NR_153443, intron 6 of 24)	69023.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35423296-3	chr7	35422799	35423799	+	830.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153799, intron 11 of 19)	intron (NR_153799, intron 11 of 19)	-25793.0	NM_001199015	30962.0	Mm.45874	NM_021291	ENSMUSG00000030492	Slc7a9	CSNU3	solute carrier family 7 (cationic amino acid transporter, y+ system), member 9	protein-coding	6.0	1.5	10.0	4.5	3.0	3.0
Merged-chr18-13008174-1	chr18	13007674	13008674	+	830.0	f0_balb.idr	intron (NM_153087, intron 1 of 2)	intron (NM_153087, intron 1 of 2)	1184.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25475484-2	chr14	25474984	25475984	+	830.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	16299.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81311920-2	chr7	81311420	81312420	+	830.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 11 of 21)	intron (NM_008803, intron 11 of 21)	33314.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.0	10.0	0.0	3.5	1.5	0.0
Merged-chr3-105880466-3	chr3	105879967	105880967	+	830.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	MTE2b|LTR|ERVL-MaLR	9609.0	NM_001174169	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	8.0	23.5	17.0	4.5	24.0	6.0
Merged-chr8-75098724-4	chr8	75098412	75099412	+	830.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010442, intron 4 of 4)	intron (NM_010442, intron 4 of 4)	5294.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	7.0	10.0	9.5	7.0	10.0	8.0
Merged-chr2-35727303-2	chr2	35726803	35727803	+	830.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001602, intron 12 of 13)	intron (NM_001001602, intron 12 of 13)	30571.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59820340-4	chr13	59819841	59820841	+	830.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153538, intron 2 of 27)	intron (NM_153538, intron 2 of 27)	2806.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	8.5	33.0	11.0	9.5	22.0	16.0
Merged-chr11-69558849-4	chr11	69558356	69559356	+	830.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007911, intron 1 of 4)	intron (NM_007911, intron 1 of 4)	1381.0	NM_007911	13643.0	Mm.249637	NM_007911	ENSMUSG00000003934	Efnb3	EFL-6|ELF-3|Elk-L3|Epl8|LERK-8|NLERK-2	ephrin B3	protein-coding	7.5	5.5	2.0	1.0	4.5	8.5
Merged-chr11-95252131-2	chr11	95251631	95252631	+	830.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9398.0	NM_053093	93670.0	Mm.40085	NM_053093	ENSMUSG00000020872	Tac4	AW489379|PPT-C	tachykinin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-5834194-2	chr8	5833694	5834694	+	830.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-728907.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-166408549-2	chr1	166408049	166409049	+	830.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142948, intron 1 of 4)	intron (NM_001142948, intron 1 of 4)	1279.0	NM_001142948	71592.0	Mm.192094	NM_175170	ENSMUSG00000040596	Pogk	9130401E23Rik|BASS2|mKIAA1513	pogo transposable element with KRAB domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-102682881-5	chr13	102682452	102683452	+	830.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10595.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-89026331-1	chr11	89025831	89026831	+	830.0	f1_balb.idr	Intergenic	B3A|SINE|B2	26928.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	81.5	165.5	81.0	22.0	59.0	49.5
Merged-chr3-95997613-2	chr3	95997113	95998113	+	830.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1774.0	NM_023320	67220.0	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149172493-2	chr4	149171993	149172993	+	830.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5788.0	NM_001081274	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51589661-2	chr10	51589161	51590161	+	830.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029894, intron 2 of 3)	MTEa|LTR|ERVL-MaLR	799.0	NM_029894	77296.0	Mm.30588	NM_029894	ENSMUSG00000019909	Fam162b	9430073N08Rik	family with sequence similarity 162, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122471135-2	chr8	122470635	122471635	+	830.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033142, intron 1 of 5)	MT2B1|LTR|ERVL	4929.0	NM_001033142	68718.0	Mm.34356	NM_001033142	ENSMUSG00000014470	Rnf166	1110031E24Rik|AW555115|Zfp313l	ring finger protein 166	protein-coding	6.0	5.5	3.5	0.0	4.5	1.0
Merged-chr15-6603628-2	chr15	6603128	6604128	+	830.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_155272)	TTS (NR_155272)	23781.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75650574-2	chr11	75650035	75651035	+	830.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008659)	promoter-TSS (NM_008659)	-974.0	NM_008659	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	66.0	70.0	98.5	33.5	81.0	39.0
Merged-chr10-42280002-2	chr10	42279502	42280502	+	830.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3260.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34611591-1	chr19	34611091	34612091	+	830.0	f0_c57.idr	exon (NM_001005858, exon 2 of 2)	exon (NM_001005858, exon 2 of 2)	3634.0	NM_001005858	667370.0	Mm.271850	NM_001005858	ENSMUSG00000062488	Ifit3b	I830012O16Rik	interferon-induced protein with tetratricopeptide repeats 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65671237-2	chr3	65670776	65671776	+	830.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037923, intron 2 of 2)	intron (NM_001037923, intron 2 of 2)	5048.0	NM_001166659	624866.0	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding	3.0	0.0	2.5	4.5	3.0	0.0
Merged-chr17-73918418-2	chr17	73917918	73918918	+	830.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011723, exon 14 of 36)	exon (NM_011723, exon 14 of 36)	31778.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63556530-4	chr9	63556029	63557029	+	830.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030068, intron 5 of 21)	intron (NM_030068, intron 5 of 21)	45964.0	NM_030068	78250.0	Mm.444612	NM_030068	ENSMUSG00000037801	Iqch	4921504K03Rik	IQ motif containing H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72325593-3	chr8	72325029	72326029	+	830.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6467.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	10.0	37.5	16.0	22.5	8.5	17.0
Merged-chr1-171847139-1	chr1	171846639	171847639	+	830.0	f1_balb.idr	intron (NM_001289470, intron 2 of 8)	intron (NM_001289470, intron 2 of 8)	7442.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	17.5	31.0	25.5	9.0	37.5	15.5
Merged-chr4-63363489-2	chr4	63362989	63363989	+	830.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011016, intron 3 of 5)	intron (NM_011016, intron 3 of 5)	1040.0	NM_011016	18406.0	Mm.14173	NM_011016	ENSMUSG00000061540	Orm2	Agp1|Orm-2	orosomucoid 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34331114-1	chr10	34330614	34331614	+	830.0	f1_c57bl6.idr	intron (NM_001347463, intron 5 of 10)	L1_Mus3|LINE|L1	33693.0	NM_030203	72480.0	Mm.21485	NM_030203	ENSMUSG00000039485	Tspyl4	2610102M01Rik|B230210I21Rik|D10Bwg0791e	TSPY-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120609972-2	chr11	120609472	120610472	+	830.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347615)	TTS (NM_001347615)	1495.0	NM_001347616	208990.0	Mm.29444	NM_153288	ENSMUSG00000044034	Npb	PPL7|mPPL7	neuropeptide B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-151294180-3	chr3	151293677	151294677	+	830.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143705.0	NM_133222	170757.0	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-92866778-2	chr7	92866278	92867278	+	830.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355126, intron 2 of 5)	intron (NM_001355126, intron 2 of 5)	7469.0	NM_001355126	74041.0	Mm.26468	NM_028729	ENSMUSG00000030641	Ddias	4632434I11Rik|noxin	DNA damage-induced apoptosis suppressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146728448-2	chr5	146727948	146728948	+	830.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	66508.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0.0	0.5	4.0	2.5	0.5	0.0
Merged-chr19-41825166-2	chr19	41824666	41825666	+	830.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4804.0	NM_008043	14296.0	Mm.4573	NM_008043	ENSMUSG00000067199	Frat1	AW060382	frequently rearranged in advanced T cell lymphomas	protein-coding	0.0	2.0	0.0	0.0	2.0	0.0
Merged-chr15-78573639-2	chr15	78573139	78574139	+	830.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009008)	promoter-TSS (NM_009008)	-856.0	NM_009008	19354.0	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	Rac family small GTPase 2	protein-coding	12.5	47.0	39.5	18.5	54.5	40.0
Merged-chr5-35102728-2	chr5	35102228	35103228	+	830.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013587, intron 1 of 7)	intron (NM_013587, intron 1 of 7)	2969.0	NM_013587	16976.0	Mm.277661	NM_013587	ENSMUSG00000029103	Lrpap1	AA617339|AI790446|AU042172|C77774|HBP44|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114621045-2	chr5	114620525	114621525	+	830.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37396.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	1.5	0.5	0.0	5.5	6.0	7.5
Merged-chr8-33593858-1	chr8	33593358	33594358	+	830.0	f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-5763.0	NM_017374	19053.0	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	2.5	19.0	2.5	10.5	10.5	0.0
Merged-chr15-78246844-4	chr15	78246327	78247327	+	830.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008677, intron 1 of 9)	intron (NM_008677, intron 1 of 9)	2016.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	70.0	97.5	100.0	64.0	208.5	136.5
Merged-chr15-102442717-2	chr15	102442217	102443217	+	830.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2285.0	NM_001356575	110542.0	Mm.60331	NM_144547	ENSMUSG00000023047	Amhr2	Misiir|Misrii|Mrii	anti-Mullerian hormone type 2 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94379447-2	chr10	94378947	94379947	+	830.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	67498.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5668625-3	chr17	5668123	5669123	+	830.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 2 of 8)	intron (NM_146073, intron 2 of 8)	-130034.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87649750-2	chr1	87649250	87650250	+	830.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	29438.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4506637-2	chr2	4506137	4507137	+	830.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 5 of 23)	intron (NM_001177843, intron 5 of 23)	-53117.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-113208281-4	chr7	113207758	113208758	+	830.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357070, intron 1 of 19)	CpG	793.0	NM_007489	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-91133604-3	chr13	91133125	91134125	+	830.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025770, intron 3 of 7)	intron (NM_025770, intron 3 of 7)	90362.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5622730-2	chr17	5622230	5623230	+	830.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	130130.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101911429-2	chr7	101910929	101911929	+	830.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025605, exon 5 of 5)	3' UTR (NM_025605, exon 5 of 5)	-5070.0	NM_001081679	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71755192-3	chr8	71754709	71755709	+	830.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29528.0	NM_028715	74015.0	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	2.5	2.5	8.5	2.0	0.5	0.0
Merged-chr11-103251418-2	chr11	103250918	103251918	+	830.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 1 of 15)	GA-rich|Low_complexity|Low_complexity	15983.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3371444-4	chr11	3370948	3371948	+	830.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361623)	promoter-TSS (NM_001361623)	-44.0	NM_173053	16886.0	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-52244175-1	chr18	52243675	52244675	+	830.0	f0_balb.idr	Intergenic	Intergenic	-87361.0	NM_026286	67634.0	Mm.179144	NM_026286	ENSMUSG00000024510	Ftmt	4930447C24Rik|FerH|Fth3|MtF	ferritin mitochondrial	protein-coding	2.0	0.5	1.5	0.0	0.0	0.0
Merged-chr8-71364351-4	chr8	71363925	71364925	+	830.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-2423.0	NM_001145780	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	3.0	5.0	11.0	8.0	14.5	5.5
Merged-chr15-62162155-4	chr15	62161648	62162648	+	829.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003368, intron 4 of 8)	intron (NR_003368, intron 4 of 8)	57303.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116632207-4	chr4	116631749	116632749	+	829.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4298.0	NM_016777	50927.0	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24526995-3	chr5	24526447	24527447	+	829.972229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015739)	promoter-TSS (NM_015739)	-99.0	NM_015739	231044.0	Mm.246596	NM_015739	ENSMUSG00000067724	Gbx1	Gbx-1	gastrulation brain homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135705314-4	chr7	135704805	135705805	+	829.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081117, intron 7 of 13)	intron (NM_001081117, intron 7 of 13)	11074.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34690988-4	chr6	34690495	34691495	+	829.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 3 of 13)	intron (NM_001347100, intron 3 of 13)	-18449.0	NM_145575	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131393876-3	chr1	131393379	131394379	+	829.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 4 of 22)	intron (NM_001081011, intron 4 of 22)	-114316.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	20.5	17.5	22.5	7.5	29.5	13.0
Merged-chr9-120068879-3	chr9	120068385	120069385	+	829.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009987)	promoter-TSS (NM_009987)	-589.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	15.0	1.0	16.0	16.5	23.5	14.0
Merged-chr2-32575032-4	chr2	32574560	32575560	+	829.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198191)	promoter-TSS (NM_198191)	-658.0	NM_198191	227733.0	Mm.78923	NM_198191	ENSMUSG00000046854	Pip5kl1	BC028795	phosphatidylinositol-4-phosphate 5-kinase-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52586799-4	chr6	52586293	52587293	+	829.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145567, intron 4 of 7)	B1F|SINE|Alu	53507.0	NM_145567	58875.0	Mm.286458	NM_145567	ENSMUSG00000029776	Hibadh	6430402H10Rik|AI265272	3-hydroxyisobutyrate dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136861185-3	chr6	136860631	136861631	+	829.9111330000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3531.0	NM_026639	109978.0	Mm.31840	NM_026639	ENSMUSG00000030217	Art4	4432404K01Rik|ARTC4|DO|DOK1	ADP-ribosyltransferase 4	protein-coding	10.0	0.0	4.5	5.5	8.0	0.0
Merged-chr14-9637866-3	chr14	9637365	9638365	+	829.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 8 of 9)	intron (NM_001360141, intron 8 of 9)	-246230.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155134226-6	chr2	155133695	155134695	+	829.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243712, intron 1 of 25)	intron (NM_001243712, intron 1 of 25)	714.0	NM_008395	16396.0	Mm.208286	NM_008395	ENSMUSG00000027598	Itch	6720481N21Rik|8030492O04Rik|A130065M08|AIP4|C230047C07Rik	itchy, E3 ubiquitin protein ligase	protein-coding	45.0	140.5	143.0	41.0	190.0	132.0
Merged-chr11-75532585-3	chr11	75532096	75533096	+	829.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_173388, exon 2 of 14)	5' UTR (NM_173388, exon 2 of 14)	484.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-5102833-3	chr7	5102316	5103316	+	829.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14095.0	NM_001145013	192658.0	Mm.28764	NM_138954	ENSMUSG00000035191	Rfpl4	D7Ertd486e|Rfpl4a	ret finger protein-like 4	protein-coding	1.0	8.5	6.0	0.0	0.5	3.5
Merged-chr18-84092458-7	chr18	84091935	84092935	+	829.8809809999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146090, intron 1 of 1)	intron (NM_146090, intron 1 of 1)	4277.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116007904-2	chr11	116007404	116008404	+	829.875	f1_balb.idr|f1_c57bl6.idr	TTS (NM_016905)	TTS (NM_016905)	4815.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	0.0	0.0	0.0	8.5	0.0	0.0
Merged-chr4-59550379-4	chr4	59549868	59550868	+	829.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1004.0	NM_144904	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9610207-4	chr4	9609714	9610714	+	829.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 4 of 22)	intron (NM_001290367, intron 4 of 22)	33503.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	10.5	0.0	1.0	4.5	0.0	1.0
Merged-chr8-111393827-4	chr8	111393307	111394307	+	829.8690190000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178086)	promoter-TSS (NM_178086)	14.0	NM_178086	338521.0	Mm.41083	NM_178086	ENSMUSG00000033579	Fa2h	FAAH|Faxdc1|G630055L08Rik	fatty acid 2-hydroxylase	protein-coding	0.0	0.0	0.0	0.0	12.5	0.0
Merged-chr15-86173874-3	chr15	86173378	86174378	+	829.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	L1MDa|LINE|L1	-11850.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128680679-4	chr4	128680176	128681176	+	829.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	-8062.0	NM_018774	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163599437-2	chr2	163598937	163599937	+	829.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2877.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-66711482-3	chr17	66711029	66712029	+	829.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 23 of 32)	ORR1E|LTR|ERVL-MaLR	-2927.0	NR_151453	102639882.0	Mm.443262	NR_151453		1700016K05Rik	-	RIKEN cDNA 1700016K05 gene	ncRNA	7.0	3.0	1.0	8.0	0.5	3.0
Merged-chr15-59280022-2	chr15	59279522	59280522	+	829.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-26926.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	0.0	0.0	0.0	0.0	5.5	0.0
Merged-chr14-117710832-3	chr14	117710325	117711325	+	829.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011821, intron 4 of 8)	intron (NM_011821, intron 4 of 8)	243022.0	NR_105747	102465148.0		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	1.0	1.0	0.0	0.0	0.0	4.0
Merged-chr3-95629958-3	chr3	95629448	95630448	+	829.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001026212, exon 3 of 3)	3' UTR (NM_001026212, exon 3 of 3)	4968.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	7.5	2.0	6.0	8.5	7.0	1.5
Merged-chr5-101753827-4	chr5	101753309	101754309	+	829.779175	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-11321.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	18.5	2.0	2.0	0.0	3.5	0.5
Merged-chr13-20184865-4	chr13	20184400	20185400	+	829.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	94393.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	5.5	38.5	14.0	10.0	27.5	12.5
Merged-chr2-127080940-4	chr2	127080424	127081424	+	829.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026678, intron 2 of 7)	intron (NM_026678, intron 2 of 7)	10267.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	18.0	62.0	30.5	19.5	55.5	30.5
Merged-chr13-112661247-6	chr13	112660703	112661703	+	829.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178746, intron 1 of 14)	intron (NM_178746, intron 1 of 14)	437.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	10.5	53.5	39.0	10.0	25.0	22.0
Merged-chr9-21231718-2	chr9	21231218	21232218	+	829.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_016679, exon 3 of 5)	exon (NM_016679, exon 3 of 5)	7614.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158107460-4	chr2	158106952	158107952	+	829.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15655.0	NR_040609	72340.0	Mm.443395	NR_040609	ENSMUSG00000100860	2010009K17Rik	-	RIKEN cDNA 2010009K17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-185248889-2	chr1	185248393	185249393	+	829.75	f0_balb.idr|f1_balb.idr	intron (NM_001163754, intron 12 of 34)	intron (NM_001163754, intron 12 of 34)	5918.0	NR_035529	100316737.0		NR_035529	ENSMUSG00000105770	Mir664	mir-664|mmu-mir-664	microRNA 664	ncRNA	12.0	4.5	15.5	7.5	57.0	35.5
Merged-chr11-118469999-4	chr11	118469496	118470496	+	829.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57-int|LTR|ERV1	-6836.0	NM_172573	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105261064-2	chr4	105260592	105261592	+	829.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103745.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.0	0.0	0.0	7.5	18.5	6.0
Merged-chr1-64531672-4	chr1	64531140	64532140	+	829.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1164.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-25528747-2	chr5	25528247	25529247	+	829.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1271.0	NR_027388	73571.0	Mm.105263	NR_027388	ENSMUSG00000101856	1700096K18Rik	-	RIKEN cDNA 1700096K18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120136332-4	chr10	120135842	120136842	+	829.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-23377.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	0.0	3.5	2.0	0.0	1.0	0.0
Merged-chr6-122818610-2	chr6	122818110	122819110	+	829.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1574.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79038333-3	chr8	79037848	79038848	+	829.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 1 of 14)	intron (NM_001294279, intron 1 of 14)	9911.0	NM_178267	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77752718-4	chr15	77752215	77753215	+	829.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357895, intron 3 of 3)	intron (NM_001357895, intron 3 of 3)	2558.0	NM_001357896	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34241401-4	chr19	34240884	34241884	+	829.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007392, exon 9 of 9)	3' UTR (NM_007392, exon 9 of 9)	8759.0	NM_001360720	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	1.5	0.0	6.0	1.5	8.5	4.5
Merged-chr1-183273278-4	chr1	183272698	183273698	+	829.674988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-23862.0	NM_181732	108909.0	Mm.290502	NM_145626	ENSMUSG00000042901	Aida	2610208M17Rik|BC004835	axin interactor, dorsalization associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31076945-3	chr6	31076426	31077426	+	829.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13833.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-13354299-3	chr14	13353800	13354800	+	829.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028052, intron 2 of 5)	intron (NM_028052, intron 2 of 5)	69520.0	NM_028052	72003.0	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33746318-2	chr16	33745818	33746818	+	829.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 10 of 14)	intron (NM_175256, intron 10 of 14)	-47719.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0.0	0.5	2.5	0.0	0.5	2.5
Merged-chr2-124855060-2	chr2	124854560	124855560	+	829.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	201479.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-144316719-3	chr1	144316198	144317198	+	829.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67594.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157036509-3	chr2	157036035	157037035	+	829.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164663, intron 6 of 14)	MIR3|SINE|MIR	-29460.0	NM_025853	66934.0	Mm.25410	NM_025853	ENSMUSG00000027635	Dsn1	1700022L09Rik|AW552447	DSN1 homolog, MIS12 kinetochore complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-101596922-3	chr3	101596417	101597417	+	829.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	7790.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-135488499-3	chr2	135488000	135489000	+	829.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94720.0	NR_015544	320684.0	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91542020-2	chr16	91541520	91542520	+	829.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5074.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60199897-4	chr11	60199384	60200384	+	829.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_105886)	TTS (NR_105886)	733.0	NR_105886	102465555.0		NR_105886	ENSMUSG00000098547	Mir6921	Gm27352|mmu-mir-6921	microRNA 6921	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62980005-2	chr9	62979505	62980505	+	829.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 1 of 13)	intron (NM_019663, intron 1 of 13)	874.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-76751239-2	chr13	76750747	76751747	+	829.666626	f0_c57.idr|f1_c57bl6.idr	intron (NM_030174, intron 6 of 20)	intron (NM_030174, intron 6 of 20)	366286.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	13.0	3.5	8.5	2.5	6.0	1.0
Merged-chr9-20975837-4	chr9	20975327	20976327	+	829.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010333, intron 1 of 1)	intron (NM_010333, intron 1 of 1)	966.0	NM_010333	14739.0	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-108671060-2	chr5	108670560	108671560	+	829.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_174870, exon 3 of 3)	3' UTR (NM_174870, exon 3 of 3)	3736.0	NM_001310692	231583.0	Mm.440571	NM_174870	ENSMUSG00000046959	Slc26a1	Sat1	solute carrier family 26 (sulfate transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	1.5	0.0
Merged-chr14-62839360-5	chr14	62838781	62839781	+	829.631104	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	1560.0	NR_106174	102465889.0		NR_106174	ENSMUSG00000099245	Mir8098	Gm27462|mmu-mir-8098	microRNA 8098	ncRNA	26.0	71.0	54.0	32.0	57.5	62.0
Merged-chr10-41826715-4	chr10	41826209	41827209	+	829.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162908, intron 1 of 9)	intron (NM_001162908, intron 1 of 9)	16135.0	NM_001162908	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29180568-4	chr19	29180067	29181067	+	829.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45288.0	NR_029778	724062.0		NR_029778	ENSMUSG00000065556	Mir101b	Mirn101b|mir-101b	microRNA 101b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-140971811-4	chr4	140971303	140972303	+	829.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355515, intron 3 of 7)	intron (NM_001355515, intron 3 of 7)	10532.0	NM_023374	67680.0	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43606919-4	chr17	43606392	43607392	+	829.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013737, intron 9 of 11)	B3A|SINE|B2	-15383.0	NR_045444	73504.0	Mm.9277	NR_045444	ENSMUSG00000090307	1700071M16Rik	-	RIKEN cDNA 1700071M16 gene	ncRNA	0.0	5.5	4.5	0.0	4.0	1.0
Merged-chr15-6238399-4	chr15	6237889	6238889	+	829.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61400.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135763666-2	chr5	135763166	135764166	+	829.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289557, intron 3 of 6)	intron (NM_001289557, intron 3 of 6)	14635.0	NM_001289554	76571.0	Mm.247666	NM_029659	ENSMUSG00000019178	Styxl1	1700011C14Rik|Dusp24|Mkstyx	serine/threonine/tyrosine interacting-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-109478426-4	chr14	109477922	109478922	+	829.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR80A|LTR|ERVL	-564183.0	NM_199065	76965.0	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-99193047-5	chr4	99192589	99193589	+	829.623352	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175029)	promoter-TSS (NM_175029)	-845.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	41.0	86.0	49.5	75.0	85.0	58.0
Merged-chr6-3620718-3	chr6	3620248	3621248	+	829.622192	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100637.0	NR_030612	100124468.0		NR_030612	ENSMUSG00000076357	Mir653	Mirn653|mir-653|mmu-mir-653	microRNA 653	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-92675891-3	chr7	92675367	92676367	+	829.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie1b|DNA|hAT-Charlie	-5955.0	NM_029078	74737.0	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	23.5	38.5	22.5	37.5	49.0	51.0
Merged-chr1-171825659-3	chr1	171825189	171826189	+	829.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14008.0	NM_001252472	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	20.0	14.5	18.5	95.5	157.5	131.5
Merged-chr11-102319453-4	chr11	102318891	102319891	+	829.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302954)	promoter-TSS (NM_001302954)	-295.0	NM_011551	21429.0	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-70662369-5	chr2	70661903	70662903	+	829.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027352, intron 1 of 9)	intron (NM_027352, intron 1 of 9)	894.0	NM_027352	70231.0	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102751164-2	chr2	102750693	102751693	+	829.583374	f0_balb.idr|f0_c57.idr	intron (NM_001077514, intron 6 of 10)	intron (NM_001077514, intron 6 of 10)	-4433.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26449733-2	chr2	26449233	26450233	+	829.583374	f1_balb.idr|f1_c57bl6.idr	intron (NR_152209, intron 1 of 2)	intron (NR_152209, intron 1 of 2)	3809.0	NR_152207	100125929.0	Mm.392411	NR_152207		0610009E02Rik	-	RIKEN cDNA 0610009E02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-13609471-4	chr6	13608957	13609957	+	829.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1359.0	NM_028990	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	2.0	4.0	0.5	0.0	0.0	2.5
Merged-chr6-134205329-4	chr6	134204829	134205829	+	829.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	169629.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-35326691-4	chr15	35326144	35327144	+	829.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045280, intron 1 of 2)	CpG	1891.0	NR_045280	100126269.0	Mm.247402	NR_045280	ENSMUSG00000115453	BC048602	-	cDNA sequence BC048602	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70839892-2	chr17	70839392	70840392	+	829.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6885.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23878325-2	chr18	23877825	23878825	+	829.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 6 of 7)	intron (NM_001162941, intron 6 of 7)	74355.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114881506-2	chr11	114881006	114882006	+	829.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8535.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126593962-2	chr7	126593462	126594462	+	829.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145636, intron 1 of 4)	intron (NM_145636, intron 1 of 4)	948.0	NM_145636	246779.0	Mm.222632	NM_145636	ENSMUSG00000044701	Il27	IL-27|IL-27p28|Il30|p28	interleukin 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69877501-2	chr11	69877001	69878001	+	829.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153143)	TTS (NM_153143)	517.0	NM_001195710	100503361.0	Mm.340490	NM_001195710	ENSMUSG00000094845	Tmem95	432576	transmembrane protein 95	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21623608-2	chr10	21623108	21624108	+	829.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30463.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-79392280-2	chr14	79391780	79392780	+	829.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-1612.0	NM_025832	66897.0	Mm.24425	NM_025832	ENSMUSG00000022020	Naa16	1300019C06Rik|Narg1l	N(alpha)-acetyltransferase 16, NatA auxiliary subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-3006852-4	chr9	3006358	3007358	+	829.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	31885.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107614003-2	chr9	107613503	107614503	+	829.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008138)	TTS (NM_008138)	-4762.0	NM_001291539	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	10.5	10.0	15.0	12.5	3.5	21.5
Merged-chr17-26583760-2	chr17	26583271	26584271	+	829.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	22259.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	14.0	10.0	13.0	4.0	5.5	8.0
Merged-chr15-78332917-2	chr15	78332417	78333417	+	829.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358854, intron 2 of 14)	(TTTTTG)n|Simple_repeat|Simple_repeat	6927.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	3.0	6.0	0.0	2.5	0.5	2.0
Merged-chr6-148994605-2	chr6	148994105	148995105	+	829.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177192, intron 20 of 20)	intron (NM_177192, intron 20 of 20)	-48135.0	NM_001361398	56306.0	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Sinhcaf|Tera	family with sequence similarity 60, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110844264-2	chr12	110843764	110844764	+	829.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_152102)	TTS (NR_152102)	3235.0	NR_152102	66709.0	Mm.390504	NR_152102		4921507G05Rik	-	RIKEN cDNA 4921507G05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-10183885-2	chr5	10183385	10184385	+	829.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B2|LTR|ERVK	-458533.0	NM_181850	108069.0	Mm.318966	NM_181850	ENSMUSG00000003974	Grm3	0710001G23Rik|Gprc1c|mGlu3|mGluR3	glutamate receptor, metabotropic 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85775679-2	chr11	85775179	85776179	+	829.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046194)	promoter-TSS (NR_046194)	1.0	NR_046194	78420.0	Mm.488197	NR_046194	ENSMUSG00000085514	Bcas3os2	9530048J24Rik	breast carcinoma amplified sequence 3 opposite strand 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43591841-2	chr17	43591341	43592341	+	829.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045444)	promoter-TSS (NR_045444)	-332.0	NR_045444	73504.0	Mm.9277	NR_045444	ENSMUSG00000090307	1700071M16Rik	-	RIKEN cDNA 1700071M16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32204931-4	chr18	32204421	32205421	+	829.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011946, intron 7 of 16)	intron (NM_011946, intron 7 of 16)	-35410.0	NM_133658	13872.0	Mm.282335	NM_133658	ENSMUSG00000024382	Ercc3	BTF2 p89|Ercc-3|XPB	excision repair cross-complementing rodent repair deficiency, complementation group 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99674991-3	chr7	99674489	99675489	+	829.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175316, intron 7 of 13)	intron (NM_175316, intron 7 of 13)	20820.0	NM_001252531	101488.0	Mm.11249	NM_175316	ENSMUSG00000030737	Slco2b1	AI060904|AI852653|OATP-B|Slc21a9	solute carrier organic anion transporter family, member 2b1	protein-coding	0.0	0.0	7.5	0.0	0.0	0.0
Merged-chr15-10870099-2	chr15	10869599	10870599	+	829.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41048.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50370721-2	chr6	50370221	50371221	+	829.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163645, intron 2 of 21)	intron (NM_001163645, intron 2 of 21)	12116.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	1.5	1.0	0.0	0.0	0.0	0.0
Merged-chr3-89910138-4	chr3	89909640	89910640	+	829.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	3056.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	15.5	60.0	45.5	18.0	42.0	28.0
Merged-chr11-69578615-2	chr11	69578115	69579115	+	829.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144824, intron 1 of 9)	intron (NM_144824, intron 1 of 9)	709.0	NM_144824	216853.0	Mm.31586	NM_144824	ENSMUSG00000041346	Wrap53	BC021790|Wdr79	WD repeat containing, antisense to Trp53	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115359672-2	chr11	115359172	115360172	+	829.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175454, intron 4 of 18)	intron (NM_175454, intron 4 of 18)	8047.0	NM_175454	217310.0	Mm.205707	NM_175454	ENSMUSG00000034586	Hid1	C630004H02Rik	HID1 domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22053495-2	chr9	22052995	22053995	+	829.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1472.0	NM_010487	15571.0	Mm.390167	NM_010487	ENSMUSG00000003410	Elavl3	2600009P04Rik|Huc|PLE21|mHuC	ELAV like RNA binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90026879-2	chr2	90026379	90027379	+	829.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-4815.0	NM_021368	258206.0	Mm.377377	NM_021368	ENSMUSG00000075069	Olfr1264	MOR236-1|Mor16|Ors16	olfactory receptor 1264	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80137396-2	chr10	80136896	80137896	+	829.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195268)	promoter-TSS (NM_001195268)	-9.0	NM_001195268	100503659.0	Mm.485395	NM_015761	ENSMUSG00000035640	Cbarp	9630008F14|Dos|R29144/1	calcium channel, voltage-dependent, beta subunit associated regulatory protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46136973-2	chr19	46136473	46137473	+	829.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008852, intron 3 of 3)	CpG	5074.0	NM_007703	12686.0	Mm.21806	NM_007703	ENSMUSG00000038754	Elovl3	CIN-2|Cig30	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43492846-4	chr13	43492350	43493350	+	829.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11877.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	1.0	0.0	0.0	0.0	1.5	3.5
Merged-chr13-41468868-2	chr13	41468369	41469369	+	829.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	18491.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	2.5	0.5	1.0	1.0	0.0	0.5
Merged-chr19-29048582-2	chr19	29048082	29049082	+	829.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021299)	promoter-TSS (NM_021299)	-680.0	NM_021299	56248.0	Mm.196067	NM_021299	ENSMUSG00000024782	Ak3	AA407498|AI506714|AK-3|Ak3l|Ak3l1|Akl3l	adenylate kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126181324-3	chr4	126180826	126181826	+	829.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356455, intron 3 of 11)	intron (NM_001356455, intron 3 of 11)	-17985.0	NM_001162533	66938.0	Mm.29813	NM_025856	ENSMUSG00000073758	Sh3d21	1700029G01Rik|AU019788	SH3 domain containing 21	protein-coding	1.5	12.5	6.5	5.5	20.0	13.5
Merged-chr7-105638728-2	chr7	105638228	105639228	+	829.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029802, intron 3 of 7)	intron (NM_029802, intron 3 of 7)	1688.0	NM_029802	76932.0	Mm.41637	NM_029802	ENSMUSG00000030881	Arfip2	2310002N04Rik|POR|Por1	ADP-ribosylation factor interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167279061-6	chr2	167278363	167279363	+	829.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38326.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30469902-3	chr2	30469414	30470414	+	829.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4285.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88282348-6	chr1	88281791	88282791	+	829.438904	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1|DNA|hAT-Tip100	-4712.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-95667035-4	chr1	95666545	95667545	+	829.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159745, intron 1 of 3)	intron (NM_001159745, intron 1 of 3)	549.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47671257-3	chr9	47670731	47671731	+	829.43335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	140879.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	6.0	5.0	20.5	33.0	41.5	30.0
Merged-chr10-80389363-4	chr10	80388800	80389800	+	829.391663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-1649.0	NM_198615	237400.0	Mm.268389	NM_198615	ENSMUSG00000048696	Mex3d	BC059858|Rkhd1	mex3 RNA binding family member D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135440790-3	chr3	135440295	135441295	+	829.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356598, intron 2 of 8)	intron (NM_001356598, intron 2 of 8)	1669.0	NM_001356597	66105.0	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141445513-4	chr4	141445012	141446012	+	829.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009541, intron 1 of 15)	intron (NM_009541, intron 1 of 15)	839.0	NM_009541	22642.0	Mm.389590	NM_009541	ENSMUSG00000006215	Zbtb17	AA589413|Lp-1|Miz1|Zfp100|mZ13	zinc finger and BTB domain containing 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-79303450-4	chr17	79302954	79303954	+	829.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51637.0	NM_026514	260409.0	Mm.140601	NM_026514	ENSMUSG00000036533	Cdc42ep3	3200001F04Rik|AA986861|Borg2|Cep3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding	0.5	0.0	3.5	0.0	0.0	0.0
Merged-chr2-48844340-4	chr2	48843815	48844815	+	829.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007396, intron 1 of 10)	intron (NM_007396, intron 1 of 10)	30206.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77457414-2	chr11	77456914	77457914	+	829.375	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291190, exon 14 of 14)	3' UTR (NM_001291190, exon 14 of 14)	-6499.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-114071660-4	chr13	114071182	114072182	+	829.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 4 of 4)	L1MA4|LINE|L1	79910.0	NR_045836	319803.0	Mm.386896	NM_177004	ENSMUSG00000114213	A430090L17Rik	-	RIKEN cDNA A430090L17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90426976-2	chr7	90426476	90427476	+	829.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_027298, exon 1 of 1)	exon (NM_027298, exon 1 of 1)	664.0	NM_027298	70054.0	Mm.307198	NM_027298	ENSMUSG00000044362	Ccdc89	1700019B01Rik|AU022100|BOIP	coiled-coil domain containing 89	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102379936-2	chr12	102379436	102380436	+	829.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 7 of 9)	intron (NM_177620, intron 7 of 9)	59877.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-143862786-4	chr2	143862307	143863307	+	829.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009751, exon 1 of 8)	exon (NM_009751, exon 1 of 8)	366.0	NM_009751	12075.0	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167476565-2	chr2	167476065	167477065	+	829.333374	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_130767, exon 14 of 14)	non-coding (NR_130767, exon 14 of 14)	-16080.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-79794969-1	chr5	79794469	79795469	+	829.333313	f0_balb.idr	Intergenic	Intergenic	-1225602.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-174334550-2	chr2	174334050	174335050	+	829.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077507, intron 2 of 10)	intron (NM_001077507, intron 2 of 10)	4461.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.0	0.0	0.5	0.0	0.0	1.0
Merged-chr2-150839084-2	chr2	150838584	150839584	+	829.333313	f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 7 of 12)	intron (NR_151505, intron 7 of 12)	3486.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70005374-3	chr8	70004875	70005875	+	829.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8991.0	NM_145596	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	3.0	10.5	16.0	7.0	15.0	13.0
Merged-chr19-40741930-3	chr19	40741359	40742359	+	829.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009848)	TTS (NM_009848)	82089.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81193684-2	chr10	81193184	81194184	+	829.333313	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007828)	TTS (NM_007828)	-1007.0	NR_015477	69678.0	Mm.81562	NR_015477		Atcayos	2310050B05Rik	ataxia, cerebellar, Cayman type, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102516974-3	chr14	102516484	102517484	+	829.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	465648.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165589360-4	chr1	165588871	165589871	+	829.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45170.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88939955-4	chr3	88939461	88940461	+	829.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164533, intron 2 of 11)	B3|SINE|B2	10321.0	NM_022994	65111.0	Mm.29028	NM_022994	ENSMUSG00000068921	Dap3	4921514D13Rik|DAP-3|MRP-S29|S29mt	death associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-72260981-3	chr7	72260544	72261544	+	829.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024703, intron 1 of 22)	Lx7|LINE|L1	45551.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93445530-2	chr2	93445008	93446008	+	829.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136055, intron 1 of 9)	intron (NM_001136055, intron 1 of 9)	7164.0	NM_001271462	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0.0	2.0	0.5	16.0	0.0	1.0
Merged-chr8-72240783-2	chr8	72240276	72241276	+	829.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007456, intron 1 of 11)	B1_Mm|SINE|Alu	758.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	21.5	35.5	34.0	27.5	60.5	57.0
Merged-chr8-84928786-4	chr8	84928301	84929301	+	829.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019945, intron 6 of 25)	intron (NM_019945, intron 6 of 25)	8552.0	NM_019945	56527.0	Mm.154614	NM_019945	ENSMUSG00000053693	Mast1	9430008B02Rik|SAST|SAST170	microtubule associated serine/threonine kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80230200-4	chr12	80229719	80230719	+	829.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 1 of 20)	intron (NM_134156, intron 1 of 20)	30152.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121345092-2	chr3	121344592	121345592	+	829.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_155539, intron 2 of 2)	PB1D10|SINE|Alu	53352.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	0.0	0.5	1.5	0.0	0.0	0.0
Merged-chr7-126585716-4	chr7	126585217	126586217	+	829.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146311)	promoter-TSS (NM_001146311)	100.0	NM_001146311	12752.0	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8890402-2	chr19	8889902	8890902	+	829.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_104416, intron 2 of 2)	intron (NR_104416, intron 2 of 2)	1519.0	NR_104416	66276.0	Mm.27503	NM_025463	ENSMUSG00000071653	1810009A15Rik	-	RIKEN cDNA 1810009A15 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148478497-4	chr2	148477997	148478997	+	829.233337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34962.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124651312-4	chr2	124650866	124651866	+	829.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	-2215.0	NM_199240	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147899185-3	chr5	147898695	147899695	+	829.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4380.0	NM_027872	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	2.5	5.0	8.0	0.0	18.5	2.0
Merged-chr8-108780457-5	chr8	108780011	108781011	+	829.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	65867.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.0	12.0	4.0	7.0	61.0	38.5
Merged-chr17-23645104-3	chr17	23644629	23645629	+	829.200012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001320258, exon 1 of 10)	5' UTR (NM_001320258, exon 1 of 10)	140.0	NM_001033339	240047.0	Mm.235343	NM_001033339	ENSMUSG00000023903	Mmp25	F730048C11Rik|Leukolysin|MMP20|MT6-MMP	matrix metallopeptidase 25	protein-coding	5.5	4.0	3.0	0.0	0.0	0.5
Merged-chr13-99323316-2	chr13	99322844	99323844	+	829.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_026873, intron 8 of 9)	Lx8|LINE|L1	21334.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	25.5	33.5	42.0	11.5	57.5	23.5
Merged-chr2-52942935-3	chr2	52942458	52943458	+	829.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	85090.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105978695-3	chr1	105978150	105979150	+	829.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_151625)	TTS (NR_151625)	11632.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	26.0	69.5	32.5	21.0	40.0	27.0
Merged-chr2-28441006-4	chr2	28440500	28441500	+	829.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GTTTG)n|Simple_repeat|Simple_repeat	-6941.0	NM_001005420	241289.0	Mm.330095	NM_001005420	ENSMUSG00000035829	Ppp1r26	Gm347|Kiaa0649|mKIAA0649	protein phosphatase 1, regulatory subunit 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71513212-2	chr8	71512712	71513712	+	829.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1443.0	NM_032398	84094.0	Mm.260768	NM_032398	ENSMUSG00000034845	Plvap	MECA32|Pv1	plasmalemma vesicle associated protein	protein-coding	0.0	0.0	2.0	3.5	2.5	1.5
Merged-chr12-35039207-2	chr12	35038707	35039707	+	829.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7982.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	74.0	124.5	90.0	68.5	169.0	84.0
Merged-chr12-84178260-2	chr12	84177760	84178760	+	829.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	15755.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142815500-4	chr5	142814995	142815995	+	829.145874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178242, intron 1 of 15)	CpG-11746	1892.0	NM_178242	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-75733876-12	chr12	75733387	75734387	+	829.145813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030750, intron 1 of 2)	intron (NM_030750, intron 1 of 2)	1842.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40850913-2	chr4	40850413	40851413	+	829.125	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_039584)	promoter-TSS (NR_039584)	-775.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94858852-4	chr10	94858356	94859356	+	829.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 9 of 30)	intron (NM_018797, intron 9 of 30)	85722.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-54836223-2	chr7	54835733	54836733	+	829.125	f0_balb.idr|f1_balb.idr	intron (NM_178705, intron 1 of 11)	intron (NM_178705, intron 1 of 11)	988.0	NM_178705	233271.0	Mm.387344	NM_178705	ENSMUSG00000063297	Luzp2	9330154K17Rik|D130073E01	leucine zipper protein 2	protein-coding	4.5	0.0	0.0	1.5	0.5	2.0
Merged-chr8-36866912-3	chr8	36866396	36867396	+	829.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 2 of 17)	L3|LINE|CR1	85546.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	59.5	40.0	35.0	12.5	12.0	11.5
Merged-chr16-64935130-3	chr16	64934641	64935641	+	829.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008310, intron 2 of 2)	MLT1A1|LTR|ERVL-MaLR	83140.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	7.0	27.5	19.0	2.0	4.5	3.5
Merged-chr10-71327102-3	chr10	71326634	71327634	+	829.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16389.0	NR_152791	102637684.0	Mm.338906	NR_152791	ENSMUSG00000093732	Gm20609	-	predicted gene 20609	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152951633-3	chr2	152951109	152952109	+	829.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145744)	promoter-TSS (NM_145744)	-27.0	NM_001159376	252864.0	Mm.330671	NM_145744	ENSMUSG00000042662	Dusp15	AI851682|LMW-DSP10|T-DSP10	dual specificity phosphatase-like 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3774255-5	chr4	3773792	3774792	+	829.1094969999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	BGLII_B|LTR|ERVK	59328.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	30.0	25.0	11.0	2.0	5.5	15.0
Merged-chr12-10689181-4	chr12	10688677	10689677	+	829.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	242789.0	NR_110487	328061.0	Mm.56067	NR_110487	ENSMUSG00000112792	Gm38407	4931412M21	predicted gene, 38407	ncRNA	0.0	9.0	6.5	0.5	0.0	2.5
Merged-chr6-83586630-2	chr6	83586130	83587130	+	829.099976	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_078345, exon 8 of 8)	non-coding (NR_078345, exon 8 of 8)	-14126.0	NM_001362080	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-56995640-4	chr9	56995110	56996110	+	829.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019651, exon 1 of 13)	exon (NM_019651, exon 1 of 13)	642.0	NM_019651	56294.0	Mm.325643	NM_019651	ENSMUSG00000032290	Ptpn9	MEG2	protein tyrosine phosphatase, non-receptor type 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-54058545-4	chr10	54058045	54059045	+	829.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 2 of 12)	intron (NM_008548, intron 2 of 12)	17251.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98238656-4	chr12	98238154	98239154	+	829.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008079, intron 7 of 16)	MTC|LTR|ERVL-MaLR	20805.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-43260943-4	chr6	43260498	43261498	+	829.016663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-4646.0	NM_133674	54324.0	Mm.320978	NM_133674	ENSMUSG00000033542	Arhgef5	2210412D05Rik|AA717842|AW495314|Tim1	Rho guanine nucleotide exchange factor (GEF) 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34847458-1	chr17	34846958	34847958	+	829.0	f1_balb.idr	exon (NM_021337, exon 7 of 28)	exon (NM_021337, exon 7 of 28)	-2291.0	NR_105936	102465586.0		NR_105936	ENSMUSG00000098460	Mir6970	Gm27589|mmu-mir-6970	microRNA 6970	ncRNA	0.0	3.0	4.0	0.0	0.0	0.0
Merged-chr7-45705670-2	chr7	45705159	45706159	+	829.0	f0_balb.idr|f0_c57.idr	TTS (NM_009800)	TTS (NM_009800)	412.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98936643-5	chr11	98936088	98937088	+	829.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1108.0	NM_009024	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-116405956-2	chr12	116405485	116406485	+	829.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NR_028421)	promoter-TSS (NR_028421)	583.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	13.0	17.0	16.5	5.0	11.0	22.5
Merged-chr7-145260743-1	chr7	145260243	145261243	+	829.0	f1_balb.idr	intron (NM_146206, intron 16 of 24)	intron (NM_146206, intron 16 of 24)	23268.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	0.0	7.5	3.0	3.5	3.5	2.5
Merged-chr5-125311232-1	chr5	125310732	125311732	+	829.0	f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	29862.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	7.5	11.5	16.5	16.0	4.5	7.5
Merged-chr10-13200637-1	chr10	13200137	13201137	+	829.0	f0_balb.idr	Intergenic	Intergenic	-7500.0	NM_181470	353258.0	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 ribosome biogenesis factor	protein-coding	26.5	20.0	30.0	24.0	17.0	24.5
Merged-chr19-47433558-1	chr19	47433058	47434058	+	829.0	f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	30853.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	11.0	19.0	12.5	19.5	7.0	10.5
Merged-chr4-43980211-2	chr4	43979711	43980711	+	829.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-3293.0	NM_001002787	442829.0	Mm.348215	NM_001002787	ENSMUSG00000070999	Ccin	4933417A14Rik	calicin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81200633-2	chr7	81200133	81201133	+	829.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13171.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	20.0	49.0	48.0	36.0	44.0	56.5
Merged-chr7-80395633-1	chr7	80395133	80396133	+	829.0	f1_c57bl6.idr	intron (NM_011046, intron 7 of 15)	intron (NM_011046, intron 7 of 15)	7179.0	NM_011046	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	3.0	3.0	3.0	0.5	4.0	0.0
Merged-chr3-59261831-2	chr3	59261331	59262331	+	829.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 32 of 43)	intron (NM_177855, intron 32 of 43)	1154.0	NM_027571	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	63.0	143.0	84.0	27.0	145.0	68.0
Merged-chr4-9582139-1	chr4	9581639	9582639	+	829.0	f1_c57bl6.idr	intron (NM_001177854, intron 11 of 11)	intron (NM_001177854, intron 11 of 11)	61578.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	1.5	4.0	0.0	0.0	1.0	0.0
Merged-chr1-141421589-2	chr1	141421089	141422089	+	829.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-765187.0	NR_040604	75910.0	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72517698-4	chr6	72517190	72518190	+	829.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26701.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95086892-3	chr10	95086397	95087397	+	829.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58928.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5954728-2	chr19	5954228	5955228	+	829.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 5 of 17)	intron (NM_001164057, intron 5 of 17)	9478.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	2.0	5.0	15.0	2.0	5.5	6.0
Merged-chr19-7303491-2	chr19	7302991	7303991	+	829.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080388, intron 1 of 16)	intron (NM_001080388, intron 1 of 16)	-8044.0	NM_001080390	13728.0	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136251206-3	chr5	136250712	136251712	+	829.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291238, intron 20 of 22)	intron (NM_001291238, intron 20 of 22)	-6272.0	NM_018825	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	1.0	0.0	3.5	6.0	0.0	1.0
Merged-chr14-101593268-2	chr14	101592768	101593768	+	829.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	15923.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-85924608-3	chr5	85924137	85925137	+	829.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	140946.0	NM_001345902	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	0.0	0.0	0.0	4.0	0.0	2.5
Merged-chr13-113352755-3	chr13	113352255	113353255	+	829.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143096.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-31252505-3	chr9	31251993	31252993	+	829.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BC1_Mm|scRNA|scRNA	-18908.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114867509-2	chr11	114867009	114868009	+	829.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110338, intron 3 of 3)	MER5A|DNA|hAT-Charlie	15479.0	NM_147217	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37531051-4	chr9	37530598	37531598	+	829.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136939, intron 1 of 6)	intron (NR_136939, intron 1 of 6)	3009.0	NM_027102	69524.0	Mm.41751	NM_027102	ENSMUSG00000001946	Esam	2310008D05Rik|Esam1|W117m	endothelial cell-specific adhesion molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116042028-2	chr9	116041528	116042528	+	829.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028638, intron 14 of 14)	intron (NM_028638, intron 14 of 14)	132573.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121618790-4	chr3	121618292	121619292	+	829.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	24693.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120959408-2	chr6	120958908	120959908	+	829.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001270475, exon 26 of 32)	exon (NM_001270475, exon 26 of 32)	564.0	NR_138099	215458.0	Mm.122399	NR_138099		LOC215458	-	uncharacterized LOC215458	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107084416-3	chr4	107083910	107084910	+	829.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175471, exon 9 of 9)	3' UTR (NM_175471, exon 9 of 9)	-12481.0	NM_172873	242603.0	Mm.257231	NM_172873	ENSMUSG00000047636	Cdcp2	D030010E02Rik	CUB domain containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-59315389-2	chr19	59314889	59315889	+	829.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033222, intron 2 of 4)	intron (NM_001033222, intron 2 of 4)	30391.0	NM_001033222	107368.0	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	0.5	0.5	0.0	0.5	0.5	0.0
Merged-chr8-117494974-2	chr8	117494474	117495474	+	829.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3301.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11051186-2	chr19	11050686	11051686	+	829.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102366)	promoter-TSS (NR_102366)	-620.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23752855-1	chr13	23752355	23753355	+	829.0	f1_c57bl6.idr	TTS (NM_178203)	TTS (NM_178203)	475.0	NM_178203	319150.0		NM_178203	ENSMUSG00000069267	Hist1h3b	H3-53	histone cluster 1, H3b	protein-coding	3.5	0.0	3.5	5.0	5.0	3.0
Merged-chr11-117081030-2	chr11	117080530	117081530	+	829.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	3682.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84268464-2	chr17	84267964	84268964	+	829.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 30 of 37)	intron (NM_183021, intron 30 of 37)	-80517.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-127371989-1	chr1	127371489	127372489	+	829.0	f1_balb.idr	intron (NM_145128, intron 6 of 17)	intron (NM_145128, intron 6 of 17)	167003.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.0	3.0	0.0	0.0	0.0	0.0
Merged-chr2-52524992-2	chr2	52524492	52525492	+	829.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	33619.0	NM_146123	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49273025-3	chr13	49272533	49273533	+	829.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 14 of 17)	intron (NM_015759, intron 14 of 17)	-24327.0	NM_028340	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-77276133-2	chr5	77275633	77276633	+	829.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011263, intron 3 of 3)	B3|SINE|B2	3376.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30806238-2	chr2	30805738	30806738	+	829.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1730.0	NM_001356435	66617.0	Mm.33167	NM_170592	ENSMUSG00000026857	Ntmt1	2610205E22Rik|AL033331|AL033332|Mettl11a|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-82767400-1	chr10	82766900	82767900	+	829.0	f0_balb.idr	Intergenic	Intergenic	-3259.0	NM_010914	18045.0	Mm.245998	NM_010914	ENSMUSG00000020248	Nfyb	AA985999|Cbf-A	nuclear transcription factor-Y beta	protein-coding	0.0	0.5	0.0	4.0	8.5	0.5
Merged-chr17-34294496-1	chr17	34293996	34294996	+	829.0	f1_balb.idr	Intergenic	Intergenic	-6725.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	72.5	155.5	112.5	76.5	155.5	82.5
Merged-chr18-60788625-2	chr18	60788135	60789135	+	829.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	14039.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	3.0	1.5	6.5	3.0	4.0	4.5
Merged-chr5-76517718-2	chr5	76517218	76518218	+	829.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	-11589.0	NM_001359372	69940.0	Mm.403233	NM_027270	ENSMUSG00000036435	Exoc1	2810407P21Rik|A730011E05Rik|SEC3|Sec3l1|Sec3p	exocyst complex component 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-129745048-2	chr3	129744548	129745548	+	829.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010113, intron 1 of 23)	intron (NM_010113, intron 1 of 23)	-8710.0	NR_040589	319224.0	Mm.477035	NR_040589	ENSMUSG00000105960	6330410L21Rik	-	RIKEN cDNA 6330410L21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130467613-2	chr2	130467113	130468113	+	829.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355161, intron 1 of 21)	MTD|LTR|ERVL-MaLR	17335.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	0.0	3.5	5.5	6.5	0.0	4.0
Merged-chr6-110220493-2	chr6	110219993	110220993	+	829.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-425019.0	NM_001346640	108073.0	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90564827-2	chr2	90564327	90565327	+	829.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	15820.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7277762-2	chr19	7277262	7278262	+	829.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080388, intron 16 of 16)	intron (NM_001080388, intron 16 of 16)	9483.0	NM_001320554	104383.0	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143066688-4	chr5	143066215	143067215	+	829.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	46305.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117453220-4	chr8	117452737	117453737	+	829.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_106045)	TTS (NR_106045)	214.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101316646-1	chr11	101316146	101317146	+	829.0	f0_c57.idr	intron (NM_011192, intron 1 of 10)	intron (NM_011192, intron 1 of 10)	433.0	NM_011192	19192.0	Mm.288477	NM_011192	ENSMUSG00000078652	Psme3	AA410043|AU020960|Ki|PA28gamma|REGgamma|pa28g	proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-69391784-4	chr13	69391331	69392331	+	828.983337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	142033.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	4.0	10.0	8.5	0.5	8.0	6.0
Merged-chr7-142982035-4	chr7	142981533	142982533	+	828.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-12769.0	NM_008554	17173.0	Mm.196417	NM_008554	ENSMUSG00000009248	Ascl2	2410083I15Rik|Mash2|bHLHa45	achaete-scute family bHLH transcription factor 2	protein-coding	3.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135251162-3	chr5	135250618	135251618	+	828.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010246)	promoter-TSS (NM_010246)	-71.0	NM_010246	14371.0	Mm.6256	NM_010246	ENSMUSG00000049551	Fzd9	mfz9	frizzled class receptor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136742984-3	chr6	136742494	136743494	+	828.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145067, intron 10 of 25)	intron (NM_145067, intron 10 of 25)	38748.0	NM_145067	14917.0	Mm.222729	NM_145067	ENSMUSG00000042638	Gucy2c	AI893437|GC-C|Gcc	guanylate cyclase 2c	protein-coding	2.0	9.5	2.0	12.0	14.0	7.5
Merged-chr2-25167263-3	chr2	25166759	25167759	+	828.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13499.0	NM_025980	67122.0	Mm.46539	NM_025980	ENSMUSG00000078202	Nrarp	2700054M22Rik	Notch-regulated ankyrin repeat protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89908542-4	chr3	89908050	89909050	+	828.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	4646.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-104418637-4	chr12	104418117	104419117	+	828.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11909.0	NM_009252	20716.0	Mm.482074	NM_009252	ENSMUSG00000021091	Serpina3n	Spi2-2|Spi2.2|Spi2/eb.4	serine (or cysteine) peptidase inhibitor, clade A, member 3N	protein-coding	2.5	8.0	0.5	0.0	1.5	2.5
Merged-chr11-115322544-4	chr11	115322097	115323097	+	828.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362400)	promoter-TSS (NM_001362400)	67.0	NM_001362400	237987.0	Mm.44542	NM_172801	ENSMUSG00000050201	Otop2	4732464P15	otopetrin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131321506-3	chr2	131321041	131322041	+	828.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178607, intron 1 of 5)	intron (NM_178607, intron 1 of 5)	31351.0	NM_178607	51902.0	Mm.477523	NM_178607	ENSMUSG00000048911	Rnf24	2810473M14Rik|4930505A13Rik|AI317164|C86507|D2Ertd504e	ring finger protein 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36431619-4	chr17	36431120	36432120	+	828.891663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30709.0	NM_177634	224753.0	Mm.246581	NM_177634	ENSMUSG00000048231	H2-M10.4	15H	histocompatibility 2, M region locus 10.4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79755108-4	chr10	79754633	79755633	+	828.891663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023304)	promoter-TSS (NM_023304)	14.0	NM_023304	67112.0	Mm.154211	NM_023304	ENSMUSG00000020327	Fgf22	2210414E06Rik|FGF-22	fibroblast growth factor 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129539350-3	chr2	129538860	129539860	+	828.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2758.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	19.5	41.5	26.5	15.0	5.5	11.5
Merged-chr13-73971275-3	chr13	73970745	73971745	+	828.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153830, intron 2 of 9)	intron (NR_153830, intron 2 of 9)	7394.0	NM_027704	71164.0	Mm.66995	NM_027704	ENSMUSG00000069189	Zdhhc11	4933421L13Rik|DHHC-11|Zdhhc20	zinc finger, DHHC domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5296193-3	chr18	5295688	5296688	+	828.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360447, intron 1 of 4)	intron (NM_001360447, intron 1 of 4)	38251.0	NM_178722	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44845727-2	chr7	44845227	44846227	+	828.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042655, intron 5 of 16)	PB1D10|SINE|Alu	3352.0	NM_001042655	233204.0	Mm.27567	NM_144924	ENSMUSG00000038520	Tbc1d17	BC017607	TBC1 domain family, member 17	protein-coding	0.0	0.0	1.0	2.0	0.0	0.0
Merged-chr13-94965249-4	chr13	94964737	94965737	+	828.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11107.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-17454920-2	chr11	17454420	17455420	+	828.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	197232.0	NM_001330649	57316.0	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120011668-2	chr2	120011164	120012164	+	828.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355293, intron 4 of 30)	intron (NM_001355293, intron 4 of 30)	-5853.0	NR_106125	102466842.0		NR_106125	ENSMUSG00000098632	Mir7665	Gm27478|mmu-mir-7665	microRNA 7665	ncRNA	3.5	0.0	0.5	8.0	0.0	1.0
Merged-chr7-4300464-3	chr7	4299998	4300998	+	828.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26309.0	NM_008848	18729.0	Mm.326531	NM_008848		Pira6	12M1|Pira10|p91B	paired-Ig-like receptor A6	protein-coding	0.0	0.0	1.0	0.0	3.5	0.0
Merged-chr11-21092900-3	chr11	21092396	21093396	+	828.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023324, intron 1 of 6)	intron (NM_023324, intron 1 of 6)	1572.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103874517-3	chr3	103874013	103875013	+	828.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104070, intron 6 of 22)	intron (NR_104070, intron 6 of 22)	14236.0	NM_008979	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	5.5	11.5	19.5	8.5	20.5	6.0
Merged-chr6-83162830-6	chr6	83162342	83163342	+	828.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027948, exon 4 of 4)	exon (NM_027948, exon 4 of 4)	-3082.0	NM_001198866	13191.0	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150<glued>	dynactin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5495722-5	chr17	5495258	5496258	+	828.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	3158.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81243259-4	chr7	81242760	81243760	+	828.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 1 of 21)	intron (NM_008803, intron 1 of 21)	29456.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164910702-4	chr2	164910189	164911189	+	828.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_199027, exon 2 of 28)	exon (NM_199027, exon 2 of 28)	1061.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	22.0	56.5	91.0	29.0	82.5	68.5
Merged-chr17-10874486-6	chr17	10874042	10875042	+	828.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317726, intron 1 of 6)	intron (NM_001317726, intron 1 of 6)	34183.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-60790310-2	chr14	60789810	60790810	+	828.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_027436, intron 3 of 18)	intron (NM_027436, intron 3 of 18)	5744.0	NR_040642	70478.0	Mm.274650	NM_027436	ENSMUSG00000021993	Mipep	5730405E07Rik|MIP	mitochondrial intermediate peptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126630134-4	chr7	126629613	126630613	+	828.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4643.0	NM_019738	56312.0	Mm.18742	NM_019738	ENSMUSG00000030717	Nupr1	2310032H04Rik|Com1|p8	nuclear protein transcription regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170632556-4	chr1	170632062	170633062	+	828.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11970.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172502783-2	chr1	172502289	172503289	+	828.791626	f1_balb.idr|f1_c57bl6.idr	intron (NM_178598, intron 1 of 4)	intron (NM_178598, intron 1 of 4)	2543.0	NM_178598	21346.0	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	5.5	5.5	8.5	1.5	0.0	0.5
Merged-chr1-139424125-3	chr1	139423620	139424620	+	828.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172643, exon 2 of 11)	exon (NM_172643, exon 2 of 11)	1737.0	NM_172643	226470.0	Mm.119711	NM_172643	ENSMUSG00000033964	Zbtb41	8430415N23Rik|9430031N01|9830132G07Rik|AI316857	zinc finger and BTB domain containing 41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-109781542-4	chr7	109780994	109781994	+	828.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020610)	promoter-TSS (NM_020610)	51.0	NM_020610	78593.0	Mm.275374	NM_020610	ENSMUSG00000034825	Nrip3	A330103B05Rik|D7H11orf14|ICRFP703B1614Q5.2	nuclear receptor interacting protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27770399-8	chr2	27769846	27770846	+	828.752075	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59763.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-74222536-4	chr4	74222028	74223028	+	828.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19969.0	NM_001172095	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87031084-4	chr3	87030590	87031590	+	828.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31750.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	0.0	0.5	1.5	3.5	0.0	0.5
Merged-chr10-42697232-4	chr10	42696719	42697719	+	828.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172416, intron 4 of 5)	intron (NM_172416, intron 4 of 5)	18303.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-119761944-4	chr3	119761466	119762466	+	828.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310711, intron 2 of 13)	URR1A|DNA|hAT-Charlie	21422.0	NM_001310711	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	3.0	1.5	5.0	1.0	1.0	4.0
Merged-chr14-27497827-4	chr14	27497347	27498347	+	828.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177111, intron 6 of 17)	MIR|SINE|MIR	10613.0	NM_177111	320234.0	Mm.247767	NM_177111	ENSMUSG00000046753	Ccdc66	E230015L20Rik	coiled-coil domain containing 66	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-77245676-4	chr5	77245155	77246155	+	828.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19839.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93046225-4	chr2	93045763	93046763	+	828.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177536)	promoter-TSS (NM_001177536)	-119.0	NM_001177536	100042784.0	Mm.102816	NM_001177536	ENSMUSG00000075028	Prdm11	8030443D09Rik|AA163972|Gm707	PR domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50092562-2	chr17	50092062	50093062	+	828.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 3 of 9)	intron (NM_181397, intron 3 of 9)	97935.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	4.0	0.0	3.0	1.0	2.0	0.0
Merged-chr7-98349345-2	chr7	98348845	98349845	+	828.6999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11943.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-38025555-3	chr7	38025021	38026021	+	828.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	-5969.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	12.5	9.5	0.0	41.0	43.5	57.0
Merged-chr6-55416178-3	chr6	55415702	55416702	+	828.688904	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	19315.0	NR_046179	330324.0	Mm.113703	NR_046179	ENSMUSG00000108228	6430584L05Rik	6430584L05	RIKEN cDNA 6430584L05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-18995711-4	chr10	18995246	18996246	+	828.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16217.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.0	0.5	1.5	7.0	8.0	0.5
Merged-chr1-182895933-2	chr1	182895433	182896433	+	828.666687	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001356463, exon 8 of 8)	3' UTR (NM_001356463, exon 8 of 8)	-58855.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56612744-2	chr17	56612244	56613244	+	828.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018730)	promoter-TSS (NM_018730)	-651.0	NM_018730	54217.0	Mm.11376	NM_018730	ENSMUSG00000057863	Rpl36	-	ribosomal protein L36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135868330-2	chr5	135867830	135868830	+	828.666687	f1_balb.idr|f1_c57bl6.idr	exon (NM_021403, exon 12 of 15)	exon (NM_021403, exon 12 of 15)	-19589.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-126836280-2	chr6	126835780	126836780	+	828.666687	f1_balb.idr|f1_c57bl6.idr	exon (NM_025358, exon 6 of 11)	exon (NM_025358, exon 6 of 11)	12864.0	NM_025358	66108.0	Mm.29939	NM_025358	ENSMUSG00000000399	Ndufa9	1010001N11Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9	protein-coding	17.0	9.0	24.5	14.5	9.0	19.0
Merged-chr11-108224808-3	chr11	108224325	108225325	+	828.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	119063.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75189569-3	chr14	75189048	75190048	+	828.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	L1MA8|LINE|L1	-52739.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82774517-3	chr18	82774033	82775033	+	828.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15494.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113641011-2	chr6	113640511	113641511	+	828.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 1 of 11)	intron (NM_001113553, intron 1 of 11)	2544.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90572303-4	chr2	90571819	90572819	+	828.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	8328.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132951253-4	chr4	132950790	132951790	+	828.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22805.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	20.5	60.5	57.0	16.0	51.5	26.0
Merged-chr8-72493534-2	chr8	72493066	72494066	+	828.625	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177766)	promoter-TSS (NM_177766)	-952.0	NM_177766	270066.0	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	56.0	257.0	169.0	85.0	208.5	119.0
Merged-chr8-25077955-3	chr8	25077434	25078434	+	828.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 2 of 11)	intron (NM_031257, intron 2 of 11)	23877.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156469445-3	chr1	156468943	156469943	+	828.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 1 of 15)	intron (NM_009230, intron 1 of 15)	4885.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	149.0	297.5	325.5	174.0	220.5	256.5
Merged-chr2-36217737-3	chr2	36217213	36218213	+	828.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12713.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45937096-2	chr9	45936596	45937596	+	828.599976	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172257)	TTS (NM_172257)	-1038.0	NM_011526	21345.0	Mm.283283	NM_011526	ENSMUSG00000032085	Tagln	Sm22|Sm22a|Ws310	transgelin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-174048430-4	chr1	174047936	174048936	+	828.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1939.0	NM_146716	258711.0	Mm.377648	NM_146716	ENSMUSG00000047048	Olfr432	MOR123-2	olfactory receptor 432	protein-coding	8.0	1.5	2.0	0.0	2.5	2.0
Merged-chr4-132260573-4	chr4	132260096	132261096	+	828.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122992, intron 1 of 10)	intron (NM_001122992, intron 1 of 10)	953.0	NM_020273	56809.0	Mm.103489	NM_020273	ENSMUSG00000028901	Gmeb1	1110050A04Rik|AI256615|AI481278	glucocorticoid modulatory element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-138134103-3	chr3	138133535	138134535	+	828.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163457, exon 3 of 20)	exon (NM_001163457, exon 3 of 20)	-2382.0	NM_008642	17777.0	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding	0.0	0.0	0.0	0.0	1.5	0.0
Merged-chr18-61419907-3	chr18	61419408	61420408	+	828.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-19477.0	NM_133249	170826.0	Mm.415302	NM_133249	ENSMUSG00000033871	Ppargc1b	4631412G21Rik|Perc	peroxisome proliferative activated receptor, gamma, coactivator 1 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142393922-3	chr7	142393440	142394440	+	828.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6070.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	55.5	144.0	75.5	53.0	86.0	71.5
Merged-chr17-8920557-3	chr17	8920067	8921067	+	828.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347321, intron 3 of 21)	intron (NM_001347321, intron 3 of 21)	-67766.0	NM_025851	66931.0	Mm.67591	NM_025851	ENSMUSG00000023873	1700010I14Rik	-	RIKEN cDNA 1700010I14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39274435-3	chr6	39273944	39274944	+	828.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-67671.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108880666-4	chr3	108880175	108881175	+	828.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177091, intron 4 of 12)	intron (NM_177091, intron 4 of 12)	9333.0	NM_177091	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-37640444-4	chr3	37639954	37640954	+	828.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305441, intron 1 of 1)	CpG	507.0	NM_011896	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80301752-4	chr11	80301405	80302405	+	828.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139228, intron 1 of 8)	intron (NM_139228, intron 1 of 8)	993.0	NM_139228	246104.0	Mm.194148	NM_139228	ENSMUSG00000017692	Rhbdl3	AI847581|Rhbdl4|Rhomr1|Vrho	rhomboid like 3	protein-coding	1.0	2.5	6.0	1.0	3.5	2.0
Merged-chr9-25289375-4	chr9	25288877	25289877	+	828.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359738, intron 5 of 12)	intron (NM_001359738, intron 5 of 12)	36485.0	NM_001359738	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24385839-3	chr2	24385332	24386332	+	828.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355232)	promoter-TSS (NM_001355232)	500.0	NM_177611	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91975821-4	chr2	91975277	91976277	+	828.520813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12214.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	2.5	0.0	1.5	0.0	0.5	0.0
Merged-chr15-50745538-4	chr15	50745035	50746035	+	828.520813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	143514.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123385010-2	chr8	123384510	123385510	+	828.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359076, intron 4 of 16)	B2_Mm2|SINE|B2	11299.0	NM_001286363	66855.0	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5426521-2	chr19	5426021	5427021	+	828.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_134149, exon 2 of 2)	exon (NM_134149, exon 2 of 2)	1377.0	NM_001256515	107242.0	Mm.329658	NM_134149	ENSMUSG00000047423	AI837181	Bles03|N28173	expressed sequence AI837181	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43004788-2	chr4	43004215	43005215	+	828.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053081, intron 10 of 13)	intron (NM_053081, intron 10 of 13)	-4208.0	NM_009503	269523.0	Mm.245976	NM_009503	ENSMUSG00000028452	Vcp	3110001E05|CDC48|p97|p97/VCP	valosin containing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-4764760-2	chr17	4764260	4765260	+	828.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	129780.0	NR_130984	75117.0	Mm.429393	NR_130984		4930517M08Rik	-	RIKEN cDNA 4930517M08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40129947-2	chr10	40129447	40130447	+	828.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	12307.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-80668747-2	chr1	80668247	80669247	+	828.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	Lx8b|LINE|L1	-3395.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55372669-2	chr13	55372169	55373169	+	828.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360714, intron 1 of 14)	intron (NM_001360714, intron 1 of 14)	2937.0	NM_016758	51791.0	Mm.1426	NM_016758	ENSMUSG00000052087	Rgs14	RPIP1	regulator of G-protein signaling 14	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr13-91037501-3	chr13	91036992	91037992	+	828.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025770, intron 4 of 7)	PB1D7|SINE|Alu	114370.0	NM_024175	66475.0	Mm.306302	NM_024175	ENSMUSG00000049517	Rps23	2410044J15Rik	ribosomal protein S23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-28679149-2	chr19	28678649	28679649	+	828.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045330, intron 1 of 4)	intron (NR_045330, intron 1 of 4)	925.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101620575-2	chr7	101620075	101621075	+	828.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39414.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102433759-2	chr12	102433259	102434259	+	828.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	PB1|SINE|Alu	6054.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	33.0	55.5	54.5	32.5	58.0	54.5
Merged-chr6-43642458-4	chr6	43641889	43642889	+	828.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 2 of 8)	L2|LINE|L2	23889.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69089927-2	chr11	69089427	69090427	+	828.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009497, intron 3 of 4)	intron (NM_009497, intron 3 of 4)	1399.0	NM_009497	22318.0	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|Vamp-2|sybII	vesicle-associated membrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105561117-2	chr5	105560617	105561617	+	828.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	41646.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	2.0	7.0	0.0	2.0	6.0	0.0
Merged-chr15-102624381-2	chr15	102623881	102624881	+	828.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310067, intron 1 of 11)	intron (NM_001310067, intron 1 of 11)	1083.0	NM_001310070	223922.0	Mm.208714	NM_146065	ENSMUSG00000099083	Atf7	1110012F10Rik|9430065F09Rik|AI549878|C130020M04Rik	activating transcription factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171196295-3	chr1	171195810	171196810	+	828.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025557)	promoter-TSS (NM_025557)	-42.0	NM_025557	66425.0	Mm.482117	NM_025557	ENSMUSG00000038370	Pcp4l1	1500036F01Rik	Purkinje cell protein 4-like 1	protein-coding	3.5	4.0	3.0	2.0	4.0	1.5
Merged-chr14-118231167-2	chr14	118230667	118231667	+	828.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5065.0	NR_131969	105245869.0	Mm.460408	NR_131969	ENSMUSG00000090534	LOC105245869	-	uncharacterized LOC105245869	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-57224526-2	chr2	57224026	57225026	+	828.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B3|LTR|ERVL	-13152.0	NM_001145820	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-22802506-2	chr14	22802006	22803006	+	828.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-259708.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180107473-2	chr2	180106973	180107973	+	828.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-3066.0	NM_133849	99296.0	Mm.285360	NM_133849	ENSMUSG00000039059	Hrh3	AW049250|H3R|HH3R	histamine receptor H3	protein-coding	7.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63148263-2	chr14	63147763	63148763	+	828.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360211, intron 7 of 7)	B3|SINE|B2	25801.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-51867261-2	chr12	51866783	51867783	+	828.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	BC1_Mm|scRNA|scRNA	-37747.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	10.0	22.5	29.0	12.5	33.0	31.5
Merged-chr16-22412137-2	chr16	22411637	22412637	+	828.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358428, intron 6 of 12)	intron (NM_001358428, intron 6 of 12)	26231.0	NM_001358428	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99083233-2	chr10	99082733	99083733	+	828.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23849.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173220430-2	chr2	173219930	173220930	+	828.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1508.0	NM_001139519	58203.0	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150867242-2	chr4	150866742	150867742	+	828.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133753, exon 4 of 4)	exon (NM_133753, exon 4 of 4)	12172.0	NM_133753	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-5560384-2	chr5	5559884	5560884	+	828.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357031)	promoter-TSS (NM_001357031)	-843.0	NM_001357031	207704.0	Mm.323984	NM_153116	ENSMUSG00000040464	Gtpbp10	4930545J22Rik|BC034507	GTP-binding protein 10 (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55927634-2	chr19	55927134	55928134	+	828.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331137, intron 14 of 14)	intron (NM_001331137, intron 14 of 14)	32313.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-25830132-2	chr1	25829632	25830632	+	828.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175642)	promoter-TSS (NM_175642)	-425.0	NM_175642	210933.0	Mm.336569	NM_175642	ENSMUSG00000033569	Adgrb3	A830096D10Rik|Bai3	adhesion G protein-coupled receptor B3	protein-coding	0.0	0.0	0.0	0.0	0.5	1.0
Merged-chr15-88513421-2	chr15	88512921	88513921	+	828.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86881.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148017599-2	chr4	148017099	148018099	+	828.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011929, exon 12 of 23)	exon (NM_011929, exon 12 of 23)	16877.0	NM_008725	230899.0	Mm.482123	NM_008725	ENSMUSG00000041616	Nppa	ANP|Anf|Pnd	natriuretic peptide type A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-30504406-2	chr18	30503906	30504906	+	828.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	231541.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-60469018-2	chr3	60468518	60469518	+	828.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3812.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12596307-3	chr19	12595805	12596805	+	828.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015503, exon 1 of 2)	non-coding (NR_015503, exon 1 of 2)	261.0	NR_015503	74333.0	Mm.329744	NR_015503	ENSMUSG00000086213	A330040F15Rik	-	RIKEN cDNA A330040F15 gene	ncRNA	5.0	10.5	8.5	0.0	5.0	14.0
Merged-chr7-55867573-2	chr7	55867073	55868073	+	828.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164661, intron 2 of 31)	intron (NM_001164661, intron 2 of 31)	25502.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	3.0	6.5	13.5	9.0	5.5	13.5
Merged-chr18-5135018-2	chr18	5134518	5135518	+	828.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30713.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69973789-4	chr8	69973298	69974298	+	828.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 1 of 12)	CpG	585.0	NM_001113346	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	0.0	0.0	2.0	0.0	6.5	2.0
Merged-chr11-115266397-2	chr11	115265897	115266897	+	828.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010350, intron 2 of 14)	intron (NM_010350, intron 2 of 14)	846.0	NM_010350	14813.0	Mm.39090	NM_010350	ENSMUSG00000020734	Grin2c	GluN2C|NMDAR2C|NR2C	glutamate receptor, ionotropic, NMDA2C (epsilon 3)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-125432630-4	chr1	125432128	125433128	+	828.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205386, intron 2 of 12)	intron (NM_001205386, intron 2 of 12)	3099.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129555731-3	chr4	129555230	129556230	+	828.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010693, intron 7 of 11)	intron (NM_010693, intron 7 of 11)	2081.0	NR_106199	102465997.0		NR_106199	ENSMUSG00000099070	Mir8119	Gm27567|mmu-mir-8119	microRNA 8119	ncRNA	0.0	1.5	0.0	0.0	0.0	0.5
Merged-chr19-41656226-4	chr19	41655735	41656735	+	828.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015748, intron 4 of 36)	intron (NM_015748, intron 4 of 36)	67584.0	NR_106166	102465884.0		NR_106166	ENSMUSG00000098286	Mir8091	Gm27575|mmu-mir-8091	microRNA 8091	ncRNA	0.0	14.5	1.0	2.5	3.0	0.0
Merged-chr8-126820695-3	chr8	126820188	126821188	+	828.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28332.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	3.0	8.0	1.5	1.5	3.0	0.0
Merged-chr11-72961904-3	chr11	72961418	72962418	+	828.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016745, intron 1 of 21)	intron (NM_016745, intron 1 of 21)	749.0	NM_001163337	53313.0	Mm.6306	NM_016745	ENSMUSG00000020788	Atp2a3	SERCA3b|Serca3	ATPase, Ca++ transporting, ubiquitous	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-72871465-3	chr15	72870967	72871967	+	828.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164642, intron 16 of 16)	intron (NM_001164642, intron 16 of 16)	-61143.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	2.0	9.0	4.0	7.5	1.0	8.5
Merged-chr9-65574797-3	chr9	65574284	65575284	+	828.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 1 of 5)	intron (NM_153119, intron 1 of 5)	5303.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	163.0	307.5	292.0	143.0	220.0	193.5
Merged-chr15-86267166-3	chr15	86266656	86267656	+	828.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 4 of 12)	MTE2b|LTR|ERVL-MaLR	-10519.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-63113089-4	chr1	63112588	63113588	+	828.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114609, intron 1 of 11)	intron (NM_001114609, intron 1 of 11)	1179.0	NM_001081436	227195.0	Mm.74718	NM_001081436	ENSMUSG00000040865	Ino80d	7330405I11|A430093A21Rik|BC010584	INO80 complex subunit D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120056340-4	chr6	120055836	120056836	+	828.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17681.0	NM_001185021	232341.0	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	8.0	17.0	2.0	9.0	20.5	8.5
Merged-chr11-117317739-2	chr11	117317239	117318239	+	828.416687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-13976.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95614154-4	chr9	95613622	95614622	+	828.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23506.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-30773566-3	chr10	30773046	30774046	+	828.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 1 of 14)	intron (NM_001358842, intron 1 of 14)	29780.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	2.5	0.5	0.0	2.0	0.5	0.0
Merged-chr7-65519863-3	chr7	65519379	65520379	+	828.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62152.0	NR_131060	407810.0	Mm.249337	NR_131060	ENSMUSG00000086662	BC046251	-	cDNA sequence BC046251	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91374309-3	chr16	91373763	91374763	+	828.3809809999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 1 of 7)	intron (NM_001347258, intron 1 of 7)	1480.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85119706-2	chr8	85119195	85120195	+	828.375	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_001357366)	promoter-TSS (NM_001357366)	-4.0	NM_001357366	244556.0	Mm.334682	NM_001037745	ENSMUSG00000074194	Zfp791	EG244556	zinc finger protein 791	protein-coding	12.0	27.5	24.5	47.0	26.0	43.0
Merged-chr10-128590422-4	chr10	128589928	128590928	+	828.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010153)	promoter-TSS (NM_010153)	-927.0	NM_010153	13867.0	Mm.373043	NM_010153	ENSMUSG00000018166	Erbb3	C76256|Erbb-3|Erbb3r|Her3	erb-b2 receptor tyrosine kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4350714-5	chr18	4350114	4351114	+	828.357117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 1 of 7)	intron (NM_007746, intron 1 of 7)	2339.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12369317-5	chr13	12368802	12369802	+	828.349976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26073.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38003405-4	chr18	38002905	38003905	+	828.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4436.0	NM_001205336	106952.0	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	2.5	10.5	19.5	8.0	5.0	16.5
Merged-chr11-99463290-2	chr11	99462680	99463680	+	828.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25027.0	NM_023256	66809.0	Mm.28042	NM_023256	ENSMUSG00000035775	Krt20	9030623C06Rik|Ck-20|Ck20|K20|Krt21	keratin 20	protein-coding	0.0	2.5	0.5	4.0	0.0	0.5
Merged-chr6-83442542-2	chr6	83442042	83443042	+	828.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183138)	promoter-TSS (NM_183138)	787.0	NR_028382	320775.0	Mm.434334	NR_028382	ENSMUSG00000051844	B230319C09Rik	-	RIKEN cDNA B230319C09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153259789-2	chr2	153259289	153260289	+	828.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_080463, exon 5 of 7)	exon (NM_080463, exon 5 of 7)	18257.0	NM_080463	140484.0	Mm.293761	NM_080463	ENSMUSG00000046020	Pofut1	O-FucT-1|mKIAA0180	protein O-fucosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165792922-3	chr2	165792422	165793422	+	828.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001252585, exon 19 of 22)	exon (NM_001252585, exon 19 of 22)	65251.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	3.0	6.0	2.5	0.0	3.0	2.0
Merged-chr4-137048218-1	chr4	137047718	137048718	+	828.333313	f1_c57bl6.idr	intron (NM_198248, intron 1 of 18)	CpG	477.0	NM_198248	230848.0	Mm.31068	NM_198248	ENSMUSG00000060862	Zbtb40	BC059177|C230087D24|Gm571|mKIAA0478	zinc finger and BTB domain containing 40	protein-coding	47.5	64.0	66.5	44.0	90.5	58.5
Merged-chr17-84838008-4	chr17	84837537	84838537	+	828.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47251.0	NM_028233	72416.0	Mm.217027	NM_028233	ENSMUSG00000024120	Lrpprc	3110001K13Rik|C76645|Gp130|Lrp130|Lsfc	leucine-rich PPR-motif containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122466283-3	chr3	122465796	122466796	+	828.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013867, intron 3 of 11)	intron (NM_013867, intron 3 of 11)	-17273.0	NM_001355264	29815.0	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34473224-3	chr19	34472717	34473717	+	828.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009890)	TTS (NM_009890)	1918.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-11328336-3	chr14	11327826	11328826	+	828.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	45849.0	NR_105811	102466641.0		NR_105811	ENSMUSG00000099218	Mir5124b	Gm27681|mmu-mir-5124b	microRNA 5124b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115778631-4	chr8	115778138	115779138	+	828.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71744.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-96851703-3	chr5	96851187	96852187	+	828.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVK26-int|LTR|ERVK	58302.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	2.0	2.0	0.0	0.0	9.0	10.5
Merged-chr11-119909637-3	chr11	119909128	119910128	+	828.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 2)	LTR41B|LTR|ERVL	-4182.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46775444-3	chr11	46775002	46776002	+	828.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_134248, exon 7 of 8)	exon (NM_134248, exon 7 of 8)	24334.0	NM_134248	171283.0	Mm.17771	NM_134248	ENSMUSG00000040405	Havcr1	AI503787|KIM-1|TIM-1|Tim1|Timd1	hepatitis A virus cellular receptor 1	protein-coding	4.0	0.5	6.5	1.5	13.5	8.5
Merged-chr12-103544357-3	chr12	103543861	103544861	+	828.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028980, intron 2 of 24)	intron (NM_028980, intron 2 of 24)	11796.0	NM_028980	74521.0	Mm.248619	NM_028980	ENSMUSG00000021209	Ppp4r4	8430415E04Rik|mKIAA1622	protein phosphatase 4, regulatory subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57975645-1	chr15	57975145	57976145	+	828.333313	f0_balb.idr	Intergenic	Intergenic	-10258.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77355313-4	chr11	77354848	77355848	+	828.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291190, intron 1 of 13)	MER5A|DNA|hAT-Charlie	7068.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127016140-3	chr7	127015638	127016638	+	828.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030240, intron 2 of 2)	intron (NM_030240, intron 2 of 2)	1214.0	NM_030240	67278.0	Mm.345385	NM_030240	ENSMUSG00000107068	Pagr1a	2900092E17Rik|C77040|PA1|PAGR1	PAXIP1 associated glutamate rich protein 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-109229359-3	chr13	109228883	109229883	+	828.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-95361.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-93917826-2	chr15	93917326	93918326	+	828.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NR_045737, intron 2 of 3)	intron (NR_045737, intron 2 of 3)	9285.0	NR_045737	77248.0	Mm.410768	NR_045737	ENSMUSG00000116360	9430014N10Rik	-	RIKEN cDNA 9430014N10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102948650-2	chr11	102948150	102949150	+	828.3000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2189.0	NM_011795	23829.0	Mm.57154	NM_011795	ENSMUSG00000045532	C1ql1	C1qrf|CRF|CTRP14|gliacolin	complement component 1, q subcomponent-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127762073-4	chr3	127761582	127762582	+	828.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027808, intron 1 of 13)	intron (NM_027808, intron 1 of 13)	18445.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	19.5	10.5	19.0	29.5	71.0	51.5
Merged-chr8-33517427-5	chr8	33517048	33518048	+	828.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33237.0	NR_033589	628431.0	Mm.376526	NR_033589		Hmgb1-rs17	Hmg1-rs17	high mobility group box 1, related sequence 17	pseudo	0.0	0.5	2.0	7.0	5.5	0.0
Merged-chr5-88961537-3	chr5	88961058	88962058	+	828.283325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359211, intron 3 of 26)	intron (NM_001359211, intron 3 of 26)	-66408.0	NM_001359212	54403.0	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	6.5	3.5	1.0	0.0	4.0	1.5
Merged-chr2-163788649-3	chr2	163788148	163789148	+	828.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32186.0	NM_016873	22403.0	Mm.13828	NM_016873	ENSMUSG00000027656	Wisp2	Ccn5|Crgr4|Ctgfl|Rcop1	WNT1 inducible signaling pathway protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121818962-2	chr5	121818442	121819442	+	828.25	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105998)	TTS (NR_105998)	331.0	NR_105998	102465624.0		NR_105998	ENSMUSG00000099063	Mir7031	Gm27859|mmu-mir-7031	microRNA 7031	ncRNA	5.5	0.0	4.5	4.5	1.0	6.5
Merged-chr19-42233834-2	chr19	42233334	42234334	+	828.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13744.0	NM_001141983	71146.0	Mm.329851	NM_027694	ENSMUSG00000042532	Golga7b	4933417O08Rik|AI839934	golgi autoantigen, golgin subfamily a, 7B	protein-coding	0.0	0.0	0.0	2.5	0.0	0.5
Merged-chr4-129346713-4	chr4	129346176	129347176	+	828.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025970, intron 6 of 6)	intron (NM_025970, intron 6 of 6)	10650.0	NM_025970	67106.0	Mm.36575	NM_025970	ENSMUSG00000057572	Zbtb8os	2010001H09Rik|2310028N13Rik|AI851226|Arch|Archm	zinc finger and BTB domain containing 8 opposite strand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117346715-4	chr2	117346221	117347221	+	828.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-3844.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115854661-2	chr6	115854161	115855161	+	828.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167763, intron 1 of 28)	B2_Mm2|SINE|B2	1133.0	NM_031177	81896.0	Mm.333335	NM_031177	ENSMUSG00000030323	Ift122	C86139|Wdr10|sopb	intraflagellar transport 122	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38458045-2	chr16	38457545	38458545	+	828.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009855)	promoter-TSS (NM_009855)	-888.0	NM_001359898	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59244547-4	chr2	59244048	59245048	+	828.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	83698.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-32801868-3	chr14	32801380	32802380	+	828.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163616, intron 1 of 4)	intron (NM_001163616, intron 1 of 4)	15917.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3799920-3	chr2	3799373	3800373	+	828.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86415.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124704622-3	chr8	124704125	124705125	+	828.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357357, intron 4 of 19)	intron (NM_001357357, intron 4 of 19)	17369.0	NM_001357357	234875.0	Mm.38436	NM_145607	ENSMUSG00000037300	Ttc13	BC017545	tetratricopeptide repeat domain 13	protein-coding	41.5	53.0	76.5	0.0	3.5	3.0
Merged-chr18-39304328-3	chr18	39303818	39304818	+	828.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 19 of 21)	intron (NM_001361073, intron 19 of 21)	182927.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	2.0	0.5	2.0	0.0	0.5	1.0
Merged-chr3-141492167-3	chr3	141491659	141492659	+	828.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293561, intron 1 of 16)	intron (NM_001293561, intron 1 of 16)	26595.0	NM_009472	22253.0	Mm.24430	NM_009472	ENSMUSG00000059921	Unc5c	B130051O18Rik|Unc5h3|rcm	unc-5 netrin receptor C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25341870-3	chr15	25341370	25342370	+	828.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71894.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50784556-4	chr14	50784057	50785057	+	828.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360545, intron 1 of 8)	intron (NM_001360545, intron 1 of 8)	963.0	NM_177625	219022.0	Mm.276362	NM_177625	ENSMUSG00000006288	Ttc5	-	tetratricopeptide repeat domain 5	protein-coding	1.5	11.0	13.0	4.5	12.5	10.0
Merged-chr10-81517435-4	chr10	81516952	81517952	+	828.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010304, intron 1 of 6)	intron (NM_010304, intron 1 of 6)	6773.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-107603144-2	chr8	107602644	107603644	+	828.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-14662.0	NM_010817	17463.0	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102496358-4	chr11	102495847	102496847	+	828.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159492, intron 6 of 7)	intron (NM_001159492, intron 6 of 7)	-26464.0	NM_010575	16399.0	Mm.26646	NM_010575	ENSMUSG00000034664	Itga2b	AI172977|CD41|CD41B|GpIIb|alphaIIb	integrin alpha 2b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80146615-3	chr12	80146107	80147107	+	828.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13763.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0.0	0.5	1.0	0.0	0.5	1.0
Merged-chr3-31097975-3	chr3	31097446	31098446	+	828.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011386, exon 2 of 7)	exon (NM_011386, exon 2 of 7)	2888.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-13028437-2	chr17	13027937	13028937	+	828.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-6307.0	NR_155514	102639918.0	Mm.374192	NR_155514		Gm36117	-	predicted gene, 36117	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92678722-2	chr16	92678230	92679230	+	828.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 4 of 6)	intron (NM_001111022, intron 4 of 6)	18599.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	8.5	0.0	1.5	7.0	0.0	1.5
Merged-chr8-122478006-2	chr8	122477506	122478506	+	828.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_152823, intron 4 of 14)	intron (NR_152823, intron 4 of 14)	1863.0	NR_152823	66965.0	Mm.482288	NM_153775	ENSMUSG00000049482	Ctu2	2310061F22Rik|C16orf84|Ncs2	cytosolic thiouridylase subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133822568-2	chr4	133822062	133823062	+	828.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	52169.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	8.5	3.0	15.5	16.0	10.5	6.5
Merged-chr1-131481623-4	chr1	131481137	131482137	+	828.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	45724.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	1.0	2.5	0.5	1.0	2.5	0.5
Merged-chr13-76215614-3	chr13	76215127	76216127	+	828.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	116893.0	NM_001081352	218343.0	Mm.277964	NM_001081352	ENSMUSG00000033991	Ttc37	-	tetratricopeptide repeat domain 37	protein-coding	8.0	6.0	1.5	1.0	9.5	1.0
Merged-chr17-86237524-3	chr17	86237010	86238010	+	828.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	49668.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	3.0	0.0	0.5	0.5	2.5	0.0
Merged-chr6-38145809-3	chr6	38145319	38146319	+	828.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194061, intron 15 of 19)	(TG)n|Simple_repeat|Simple_repeat	-21233.0	NM_080467	140494.0	Mm.462308	NM_080467	ENSMUSG00000038600	Atp6v0a4	Atp6n1b|a4	ATPase, H+ transporting, lysosomal V0 subunit A4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170351699-4	chr2	170351160	170352160	+	828.104187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029815, intron 11 of 12)	intron (NM_029815, intron 11 of 12)	-4701.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37346732-4	chr13	37346285	37347285	+	828.104187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	1440.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62053731-2	chr15	62053231	62054231	+	828.099976	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	14474.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69994120-2	chr11	69993606	69994606	+	828.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019749, intron 3 of 3)	B1_Mur4|SINE|Alu	-1660.0	NM_001291125	78246.0	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100216315-4	chr15	100215799	100216799	+	828.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001159361, exon 38 of 38)	3' UTR (NM_001159361, exon 38 of 38)	-11560.0	NM_007497	11908.0	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71216266-6	chr17	71215770	71216770	+	828.055542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357791, intron 2 of 19)	intron (NM_001357791, intron 2 of 19)	11616.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	16.5	49.0	57.0	15.0	43.0	44.5
Merged-chr19-5050411-3	chr19	5049986	5050986	+	828.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145495)	promoter-TSS (NM_145495)	-322.0	NM_145495	225870.0	Mm.271922	NM_145495	ENSMUSG00000024883	Rin1	-	Ras and Rab interactor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-93485504-3	chr15	93485012	93486012	+	828.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358750, intron 6 of 6)	intron (NM_001358750, intron 6 of 6)	87048.0	NM_001285863	223828.0	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121535995-3	chr3	121535510	121536510	+	828.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3666.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-9694955-3	chr14	9694456	9695456	+	828.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 8 of 9)	intron (NM_001360141, intron 8 of 9)	-189139.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91835243-2	chr16	91834743	91835743	+	828.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 16 of 28)	(CA)n|Simple_repeat|Simple_repeat	96387.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10978902-2	chr19	10978402	10979402	+	828.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001034898, exon 7 of 7)	3' UTR (NM_001034898, exon 7 of 7)	-4232.0	NM_023529	69826.0	Mm.273404	NM_023529	ENSMUSG00000024731	Ms4a10	2010001N17Rik	membrane-spanning 4-domains, subfamily A, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132827714-2	chr7	132827214	132828214	+	828.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347629, exon 4 of 4)	3' UTR (NM_001347629, exon 4 of 4)	-14518.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93815652-1	chr16	93815152	93816152	+	828.0	f1_balb.idr	Intergenic	Intergenic	-16469.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	73.5	185.5	124.5	98.5	163.0	107.5
Merged-chr11-55117948-2	chr11	55117448	55118448	+	828.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger1|DNA|TcMar-Tigger	19963.0	NM_010299	14667.0	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96254098-2	chr3	96253598	96254598	+	828.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	7398.0	NM_054045	97114.0	Mm.358797	NM_054045	ENSMUSG00000081058	Hist2h3c2	H3-614|H3.2-614|Hist2h3c2-ps|Hist2h3ca1|M32461	histone cluster 2, H3c2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89340219-3	chr6	89339728	89340728	+	828.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008881, intron 9 of 31)	intron (NM_008881, intron 9 of 31)	22385.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105418420-2	chr5	105417920	105418920	+	828.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033550, intron 1 of 4)	intron (NM_001033550, intron 1 of 4)	2645.0	NM_001033550	433926.0	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	2210408K08Rik|R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113841204-2	chr5	113840704	113841704	+	828.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10703.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	3.0	2.5	3.0	1.0	3.0	2.0
Merged-chr7-45448525-2	chr7	45448025	45449025	+	828.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030678, intron 12 of 15)	intron (NM_030678, intron 12 of 15)	11361.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117090105-2	chr5	117089605	117090605	+	828.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25888.0	NM_001122666	71954.0	Mm.34456	NM_178622	ENSMUSG00000066900	Suds3	2400003N08Rik|2410008L21Rik|AU067672|mSds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	protein-coding	1.5	7.5	2.0	1.5	8.0	1.5
Merged-chr8-119830093-2	chr8	119829593	119830593	+	828.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	10486.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135150386-2	chr5	135149886	135150886	+	828.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013763, intron 1 of 6)	intron (NM_013763, intron 1 of 6)	675.0	NM_013763	27368.0	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97881576-1	chr15	97881076	97882076	+	828.0	f0_balb.idr	intron (NM_009504, intron 3 of 9)	intron (NM_009504, intron 3 of 9)	26720.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55830747-2	chr16	55830247	55831247	+	828.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030612, intron 2 of 13)	MLT1B|LTR|ERVL-MaLR	7894.0	NM_030612	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108530873-2	chr6	108530373	108531373	+	828.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 60 of 61)	RMER10B|LTR|ERVL	41130.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70672075-2	chr11	70671575	70672575	+	828.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178116, exon 17 of 23)	exon (NM_178116, exon 17 of 23)	-2659.0	NM_001167669	216873.0	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-87020953-4	chr10	87020439	87021439	+	828.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12997.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5625672-7	chr17	5625094	5626094	+	828.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	RMER15|LTR|ERVL	132994.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-96267242-2	chr5	96266742	96267742	+	828.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_053158)	TTS (NM_053158)	57127.0	NM_053158	94061.0	Mm.295499	NM_053158	ENSMUSG00000029486	Mrpl1	2410002L03Rik|5830418D04Rik|AI462572|L1mt	mitochondrial ribosomal protein L1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65749986-2	chr17	65749477	65750477	+	828.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	22775.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	29.5	49.5	67.0	1.0	16.5	4.0
Merged-chr2-33762143-2	chr2	33761643	33762643	+	828.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 7 of 9)	intron (NM_175184, intron 7 of 9)	-43673.0	NR_045729	320482.0	Mm.442057	NR_045729	ENSMUSG00000086484	Nron	A630071L07Rik|Gm24353	non-protein coding RNA, repressor of NFAT	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136087505-4	chr5	136087029	136088029	+	828.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039103, intron 1 of 19)	intron (NM_001039103, intron 1 of 19)	3613.0	NM_001039103	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70657000-2	chr11	70656500	70657500	+	828.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276285)	promoter-TSS (NM_001276285)	-176.0	NM_001136062	13808.0	Mm.251322	NM_007933	ENSMUSG00000060600	Eno3	Eno-3|MSE	enolase 3, beta muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60340937-2	chr10	60340437	60341437	+	828.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 37 of 68)	MTD|LTR|ERVL-MaLR	-5914.0	NM_001159572	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-20009893-2	chr15	20009393	20010393	+	828.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	656857.0	NM_022816	64833.0	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding	0.0	2.5	0.0	0.0	0.0	0.0
Merged-chr18-54899103-2	chr18	54898603	54899603	+	828.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175751, exon 5 of 10)	exon (NM_175751, exon 5 of 10)	91077.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-28929990-3	chr16	28929497	28930497	+	828.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177718)	promoter-TSS (NM_177718)	-299.0	NM_177718	239796.0	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding	0.0	0.0	2.5	6.0	5.0	0.0
Merged-chr8-25276213-2	chr8	25275713	25276713	+	828.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30057.0	NR_040352	74489.0	Mm.256468	NR_040352	ENSMUSG00000110140	5430421F17Rik	-	RIKEN cDNA 5430421F17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-127205719-2	chr1	127205219	127206219	+	828.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	733.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33813239-1	chr17	33812739	33813739	+	828.0	f1_c57bl6.idr	intron (NM_030697, intron 1 of 10)	intron (NM_030697, intron 1 of 10)	2716.0	NM_030697	80880.0	Mm.196330	NM_030697	ENSMUSG00000042099	Kank3	0610013D04Rik|Ankrd47|D17Ertd288e|NG28	KN motif and ankyrin repeat domains 3	protein-coding	3.5	8.5	0.5	3.5	1.5	2.0
Merged-chr4-54857202-1	chr4	54856702	54857702	+	828.0	f0_balb.idr	Intergenic	Intergenic	-90743.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	1.5	1.0	6.0	1.5	5.0	2.5
Merged-chr13-60177701-3	chr13	60177207	60178207	+	828.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008086)	promoter-TSS (NM_008086)	-172.0	NM_008086	14451.0	Mm.22701	NM_008086	ENSMUSG00000052957	Gas1	AW554192|Gas-1	growth arrest specific 1	protein-coding	3.0	2.5	1.0	3.0	2.5	0.5
Merged-chr9-101035369-1	chr9	101034869	101035869	+	828.0	f1_balb.idr	promoter-TSS (NM_025835)	promoter-TSS (NM_025835)	-485.0	NM_025835	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	28.0	69.0	51.0	52.5	77.0	113.0
Merged-chr6-119483130-3	chr6	119482574	119483574	+	828.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133940, exon 1 of 1)	3' UTR (NM_133940, exon 1 of 1)	3406.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	3.0	6.5	4.0	0.0	5.5	6.0
Merged-chr4-115000673-4	chr4	115000171	115001171	+	828.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304551, intron 1 of 15)	intron (NM_001304551, intron 1 of 15)	553.0	NM_001304555	20460.0	Mm.3988	NM_009185	ENSMUSG00000028718	Stil	Sil	Scl/Tal1 interrupting locus	protein-coding	3.5	4.0	6.5	4.0	0.0	1.0
Merged-chr11-74497499-3	chr11	74497001	74498001	+	828.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	92657.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89312680-3	chr6	89312164	89313164	+	828.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26939.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31092091-2	chr5	31091591	31092591	+	828.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347323, intron 2 of 8)	intron (NM_001347323, intron 2 of 8)	1436.0	NM_011773	22784.0	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	1.5	0.0	0.0	0.0	0.0	1.0
Merged-chr11-80078160-2	chr11	80077660	80078660	+	828.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018776, intron 1 of 7)	intron (NM_018776, intron 1 of 7)	2831.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112220455-2	chr5	112219955	112220955	+	828.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033657, intron 6 of 6)	intron (NR_033657, intron 6 of 6)	8493.0	NR_033657	330166.0	Mm.44854	NR_003718	ENSMUSG00000097767	Miat	3632434I06|A230057G18Rik|Rncr2|gomafu	myocardial infarction associated transcript (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88622372-2	chr3	88621872	88622872	+	828.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 1 of 21)	intron (NM_001198913, intron 1 of 21)	978.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	53.5	61.0	59.5	37.5	91.0	60.0
Merged-chr13-105203978-2	chr13	105203461	105204461	+	828.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360891, intron 5 of 7)	intron (NM_001360891, intron 5 of 7)	89053.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	7.5	6.5	6.5	0.0	2.5	5.0
Merged-chr11-34405495-2	chr11	34404995	34405995	+	828.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025382, intron 3 of 3)	intron (NM_001025382, intron 3 of 3)	90673.0	NM_001025382	574403.0	Mm.444796	NM_001025382	ENSMUSG00000069911	Fam196b	EG574403|Gm6041	family with sequence similarity 196, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101151360-2	chr4	101150860	101151860	+	828.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_146145)	TTS (NM_146145)	82322.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145860549-3	chr6	145860050	145861050	+	828.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_024469, exon 5 of 5)	3' UTR (NM_024469, exon 5 of 5)	4870.0	NM_024469	79362.0	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70446245-1	chr8	70445745	70446745	+	828.0	f1_balb.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-6672.0	NM_001004062	382056.0	Mm.227767	NM_001004062	ENSMUSG00000003575	Crtc1	AI413414|Mect1|R74955|TORC1|mKIAA0616	CREB regulated transcription coactivator 1	protein-coding	2.0	0.0	0.0	2.0	2.0	0.0
Merged-chr11-103402376-3	chr11	103401883	103402883	+	828.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 2 of 11)	intron (NM_183034, intron 2 of 11)	10281.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	18.5	30.5	16.5	17.0	9.5	23.0
Merged-chr19-21943614-4	chr19	21943127	21944127	+	827.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	165287.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	5.5	3.0	2.5	1.0	14.5	1.0
Merged-chr1-128743806-3	chr1	128743413	128744413	+	827.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-151614.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	3.0	4.0	0.5	7.0	15.5	19.0
Merged-chr7-16990252-3	chr7	16989774	16990774	+	827.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4314.0	NM_001101535	434130.0	Mm.459162	NM_001101535	ENSMUSG00000041117	Ccdc8	-	coiled-coil domain containing 8	protein-coding	0.0	1.0	0.0	0.0	0.0	2.0
Merged-chr11-106659340-3	chr11	106658880	106659880	+	827.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001032378, intron 13 of 13)	intron (NM_001032378, intron 13 of 13)	-46450.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21811477-4	chr14	21810960	21811960	+	827.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20101.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	1.0	0.0	0.0	1.0	4.5	5.0
Merged-chr7-105626843-4	chr7	105626300	105627300	+	827.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018880, intron 1 of 11)	intron (NM_018880, intron 1 of 11)	6771.0	NM_018880	55992.0	Mm.29290	NM_018880	ENSMUSG00000036989	Trim3	BERP1|HAC1|Rnf22	tripartite motif-containing 3	protein-coding	11.5	7.5	3.0	1.5	0.0	3.0
Merged-chr11-109441299-3	chr11	109440792	109441792	+	827.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040680, intron 1 of 1)	B3|SINE|B2	1214.0	NR_040680	100503496.0	Mm.265874	NR_040680		Gm45916	-	predicted gene, 45916	ncRNA	0.0	1.5	8.0	6.0	1.0	8.5
Merged-chr1-91523967-3	chr1	91523470	91524470	+	827.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028718, intron 13 of 14)	intron (NM_028718, intron 13 of 14)	-16595.0	NM_001039126	65247.0	Mm.234152	NM_023046	ENSMUSG00000026311	Asb1	1700029O08Rik|1700054C17Rik|AI426616|AI851378|mKIAA1146	ankyrin repeat and SOCS box-containing 1	protein-coding	2.0	1.5	0.5	0.0	3.0	0.5
Merged-chr4-58723051-3	chr4	58722578	58723578	+	827.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62642.0	NM_146920	258922.0	Mm.223327	NM_146920	ENSMUSG00000043385	Olfr267	MOR262-1	olfactory receptor 267	protein-coding	0.0	0.0	0.0	0.0	0.0	2.5
Merged-chr18-60685187-2	chr18	60684584	60685584	+	827.875	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001348101, exon 15 of 15)	3' UTR (NM_001348101, exon 15 of 15)	21674.0	NR_045401	328963.0	Mm.417203	NR_045401		G630071F17Rik	G630071F17	RIKEN cDNA G630071F17 gene	ncRNA	0.0	21.0	2.0	0.0	3.0	4.5
Merged-chr14-111676046-4	chr14	111675507	111676507	+	827.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198865, intron 1 of 1)	CpG	892.0	NM_198865	75409.0	Mm.235097	NM_029273	ENSMUSG00000033214	Slitrk5	2610019D03Rik	SLIT and NTRK-like family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101649362-2	chr4	101648862	101649862	+	827.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_175036, intron 1 of 3)	intron (NM_175036, intron 1 of 3)	1579.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	4.0	4.5	12.5	3.5	6.5	10.0
Merged-chr12-98261276-3	chr12	98260763	98261763	+	827.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-1804.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-60004372-4	chr7	60003832	60004832	+	827.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082962, intron 2 of 10)	intron (NM_001082962, intron 2 of 10)	867.0	NM_001349694	20646.0	Mm.274995	NM_013670	ENSMUSG00000102252	Snrpn	2410045I01Rik|HCERN3|Peg4|SMN|sm-D|snRNP-N	small nuclear ribonucleoprotein N	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91008570-2	chr16	91008070	91009070	+	827.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045515, intron 2 of 32)	B4A|SINE|B4	2525.0	NM_001045515	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-86788801-2	chr3	86788301	86789301	+	827.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195498, intron 16 of 17)	intron (NM_001195498, intron 16 of 17)	132083.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-32868404-2	chr13	32867877	32868877	+	827.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-17192.0	NM_025429	66222.0	Mm.20144	NM_025429	ENSMUSG00000044734	Serpinb1a	1190005M04Rik|AI325983|EI|EIA|ELANH2|LEI|M/NEI|MNEI|PI2	serine (or cysteine) peptidase inhibitor, clade B, member 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-138518143-2	chr3	138517643	138518643	+	827.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-8048.0	NM_007917	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	3.0	4.0	1.0	1.0	4.0	0.0
Merged-chr3-135431305-2	chr3	135430805	135431805	+	827.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6927.0	NM_001356594	66105.0	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81198416-3	chr10	81197906	81198906	+	827.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027120, exon 7 of 7)	3' UTR (NM_027120, exon 7 of 7)	3631.0	NM_027120	69564.0	Mm.437211	NM_027120	ENSMUSG00000004939	Nmrk2	2310015C21Rik|Itgb1bp3|Mibp	nicotinamide riboside kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-68579836-3	chr7	68579417	68580417	+	827.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38539.0	NR_003648	384639.0	Mm.261760	NM_001013781		Gm5334	EG384639	tetraspanin 7 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80632618-2	chr10	80632118	80633118	+	827.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159591, intron 1 of 11)	intron (NM_001159591, intron 1 of 11)	2962.0	NM_001159591	103236.0	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62456889-4	chr11	62456345	62457345	+	827.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177229, intron 1 of 8)	CpG	487.0	NM_177229	20185.0	Mm.271814	NM_011308	ENSMUSG00000018501	Ncor1	5730405M06Rik|A230020K14Rik|N-CoR|RIP13|Rxrip13|mKIAA1047	nuclear receptor co-repressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115706826-2	chr11	115706326	115707326	+	827.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_008163, intron 1 of 5)	B3|SINE|B2	1771.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95047100-4	chr11	95046540	95047540	+	827.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001306162, exon 25 of 26)	exon (NM_001306162, exon 25 of 26)	-5669.0	NM_133667	18604.0	Mm.29768	NM_133667	ENSMUSG00000038967	Pdk2	-	pyruvate dehydrogenase kinase, isoenzyme 2	protein-coding	0.0	0.0	0.5	1.0	0.0	0.0
Merged-chr19-16872747-3	chr19	16872244	16873244	+	827.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008023, exon 1 of 1)	exon (NM_008023, exon 1 of 1)	1086.0	NM_008023	14240.0	Mm.7971	NM_008023	ENSMUSG00000056829	Foxb2	Fkh4	forkhead box B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56459156-6	chr18	56458619	56459619	+	827.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	26987.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-6760969-3	chr18	6760458	6761458	+	827.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4209.0	NM_181070	19330.0	Mm.132802	NM_181070	ENSMUSG00000073639	Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78263887-3	chr11	78263396	78264396	+	827.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002004, intron 3 of 38)	intron (NM_001002004, intron 3 of 38)	2142.0	NM_001002004	72503.0	Mm.237103	NM_001002004	ENSMUSG00000010277	2610507B11Rik	AU022687|D11Bhm178e|D11Bhm179e|E1|Kiaa0100|mKIAA0100	RIKEN cDNA 2610507B11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166656901-2	chr2	166656401	166657401	+	827.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	56931.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-15974896-4	chr7	15974402	15975402	+	827.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081418, intron 13 of 13)	intron (NM_001081418, intron 13 of 13)	-7367.0	NM_153068	259300.0	Mm.138215	NM_153068	ENSMUSG00000074364	Ehd2	BC027084|C130052H20Rik	EH-domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91587597-4	chr12	91587125	91588125	+	827.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175335, intron 1 of 8)	intron (NM_175335, intron 1 of 8)	2024.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-50927345-2	chr1	50926845	50927845	+	827.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019790)	promoter-TSS (NM_019790)	-178.0	NM_019790	56363.0	Mm.245154	NM_019790	ENSMUSG00000026109	Tmeff2	4832418D20Rik|7630402F16Rik|TR-2	transmembrane protein with EGF-like and two follistatin-like domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95623728-2	chr3	95623228	95624228	+	827.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-1252.0	NM_019561	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-83198574-4	chr10	83198062	83199062	+	827.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	139255.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5040954-4	chr2	5040417	5041417	+	827.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356487, intron 5 of 13)	intron (NM_001356487, intron 5 of 13)	23200.0	NM_181848	71648.0	Mm.116942	NM_181848	ENSMUSG00000026672	Optn	4930441O07Rik|FIP2|HYPL|NRP	optineurin	protein-coding	0.0	3.5	1.0	0.0	6.0	1.0
Merged-chr4-150504876-3	chr4	150504372	150505372	+	827.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 8 of 22)	intron (NM_001085492, intron 8 of 22)	147302.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	3.5	2.0	4.0	4.5	15.0	8.0
Merged-chr3-109480793-4	chr3	109480295	109481295	+	827.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	-93212.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	1.0	8.5	6.5	5.5	2.5	8.5
Merged-chr8-83572631-3	chr8	83572111	83573111	+	827.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025843)	TTS (NM_025843)	5853.0	NM_025843	66916.0	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	3.0	17.5	6.0	5.0	9.0	9.0
Merged-chr4-125115792-4	chr4	125115348	125116348	+	827.679138	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12033.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-54835973-3	chr1	54835466	54836466	+	827.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	90421.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0.0	20.0	3.5	20.5	0.0	4.0
Merged-chr5-142904852-3	chr5	142904375	142905375	+	827.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007393, intron 3 of 5)	intron (NM_007393, intron 3 of 5)	1879.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-53783160-3	chr1	53782666	53783666	+	827.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133810, intron 1 of 7)	PB1D9|SINE|Alu	2049.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	107.0	193.0	113.5	78.5	229.0	92.0
Merged-chr19-28827916-3	chr19	28827421	28828421	+	827.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5a|LINE|L1	-7245.0	NM_009199	20510.0	Mm.246670	NM_009199	ENSMUSG00000024935	Slc1a1	D130048G10Rik|EAAC1|EAAC2|EAAT3|MEAAC1	solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-186706515-3	chr1	186705967	186706967	+	827.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001329107)	promoter-TSS (NM_001329107)	-478.0	NM_001329107	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47655068-3	chr9	47654567	47655567	+	827.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	124715.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	17.0	36.5	15.5	9.5	25.0	16.5
Merged-chr2-25180016-2	chr2	25179516	25180516	+	827.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025980)	promoter-TSS (NM_025980)	-742.0	NM_025980	67122.0	Mm.46539	NM_025980	ENSMUSG00000078202	Nrarp	2700054M22Rik	Notch-regulated ankyrin repeat protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53147709-2	chr4	53147209	53148209	+	827.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	12186.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74784564-4	chr1	74784068	74785068	+	827.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009526, exon 4 of 4)	exon (NM_009526, exon 4 of 4)	-7451.0	NM_009518	22409.0	Mm.5130	NM_009518	ENSMUSG00000026167	Wnt10a	-	wingless-type MMTV integration site family, member 10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-92354057-4	chr13	92353569	92354569	+	827.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010049)	promoter-TSS (NM_010049)	-714.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81454563-4	chr7	81454086	81455086	+	827.645813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252526, intron 1 of 11)	CpG	172.0	NM_001252525	12877.0	Mm.273122	NM_007755	ENSMUSG00000025586	Cpeb1	AU024112|Cpe-bp1|Cpeb|mCPEB|mCpeb-1	cytoplasmic polyadenylation element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11513555-4	chr11	11513034	11514034	+	827.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347068, intron 8 of 8)	intron (NM_001347068, intron 8 of 8)	24268.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8916408-3	chr4	8915887	8916887	+	827.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	165063.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	6.0	3.5	1.5	4.0	8.0
Merged-chr12-69733693-4	chr12	69733189	69734189	+	827.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361691, intron 1 of 4)	intron (NM_001361691, intron 1 of 4)	8744.0	NM_001361690	68055.0	Mm.27844	NM_026536	ENSMUSG00000054894	Atp5s	1110015E18Rik|ATPW	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit S	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40872203-5	chr9	40871747	40872747	+	827.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1880.0	NM_178245	244813.0	Mm.261652	NM_178245	ENSMUSG00000054360	Bsx	Bsx1a|Bsx1b	brain specific homeobox	protein-coding	3.5	28.0	4.5	0.0	27.5	7.0
Merged-chr8-11392921-2	chr8	11392421	11393421	+	827.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009932, intron 4 of 47)	intron (NM_009932, intron 4 of 47)	-80095.0	NM_009931	12826.0	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58113341-4	chr13	58112861	58113861	+	827.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001362415, exon 1 of 15)	5' UTR (NM_001362415, exon 1 of 15)	286.0	NM_001362415	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	0.0	0.0	0.5	1.0	0.0	0.5
Merged-chr13-120321017-6	chr13	120320515	120321515	+	827.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	4153.0	NM_153523	236219.0	Mm.302175	NM_153523	ENSMUSG00000095821	Tcstv3	-	2-cell-stage, variable group, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167314860-3	chr2	167314385	167315385	+	827.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	B4|SINE|B4	34293.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44427621-3	chr10	44427123	44428123	+	827.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31125.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35021513-4	chr12	35020963	35021963	+	827.55835	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25726.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	11.5	22.0	15.0	20.5	37.5	23.0
Merged-chr1-136249915-3	chr1	136249410	136250410	+	827.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10963.0	NM_001101516	383563.0	Mm.40367	NM_001101516	ENSMUSG00000052759	Gpr25	Gm1300	G protein-coupled receptor 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122296647-3	chr14	122296137	122297137	+	827.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029556, intron 1 of 7)	intron (NM_029556, intron 1 of 7)	-62999.0	NR_015532	68245.0	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31611214-3	chr15	31610749	31611749	+	827.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356313, intron 5 of 5)	intron (NM_001356313, intron 5 of 5)	9133.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118681865-3	chr9	118681374	118682374	+	827.555542	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 13 of 27)	intron (NM_133721, intron 13 of 27)	-29818.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	11.0	8.0	17.0	9.0	4.0	7.0
Merged-chr6-72116856-3	chr6	72116332	72117332	+	827.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	ORR1B1|LTR|ERVL-MaLR	6108.0	NR_045163	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-16751721-4	chr10	16751223	16752223	+	827.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	344059.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3286198-4	chr7	3285696	3286696	+	827.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2842.0	NM_001093764	50918.0	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	5.5	15.0	6.0	9.0	2.5	3.0
Merged-chr11-107512094-4	chr11	107511585	107512585	+	827.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	32557.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	1.5	0.5	1.0	3.0	1.0	5.0
Merged-chr2-117374418-4	chr2	117373909	117374909	+	827.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31532.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	18.0	65.5	26.5	6.5	30.0	47.0
Merged-chr12-111486345-2	chr12	111485799	111486799	+	827.541626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033248)	promoter-TSS (NM_001033248)	-476.0	NM_001033248	212539.0	Mm.81916	NM_001033248	ENSMUSG00000010529	Gm266	-	predicted gene 266	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-123203816-3	chr7	123203310	123204310	+	827.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11056.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83349394-2	chr17	83348894	83349894	+	827.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-1537.0	NM_001114361	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-126520500-2	chr2	126520000	126521000	+	827.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-20653.0	NM_001359975	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140753378-2	chr5	140752878	140753878	+	827.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_173405)	TTS (NM_173405)	29251.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36258733-2	chr1	36258245	36259245	+	827.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-14443.0	NM_198899	320011.0	Mm.261022	NM_198899	ENSMUSG00000037470	Uggt1	0910001L17Rik|A930007H10Rik|AA589501|AI414429|AI448372|C820010P03Rik|GT|UGT1|Ugcgl1	UDP-glucose glycoprotein glucosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173453913-2	chr2	173453413	173454413	+	827.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68679.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	4.0	1.5	0.0	8.5	0.0	0.0
Merged-chr3-87729501-2	chr3	87729001	87730001	+	827.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001003912, exon 31 of 40)	exon (NM_001003912, exon 31 of 40)	19122.0	NM_028971	74485.0	Mm.474494	NM_028971	ENSMUSG00000023084	Lrrc71	4933430H15Rik	leucine rich repeat containing 71	protein-coding	0.5	0.0	0.0	0.0	0.0	4.0
Merged-chr3-105818097-2	chr3	105817597	105818597	+	827.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045845)	TTS (NR_045845)	2530.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91220227-2	chr16	91219727	91220727	+	827.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5323.0	NM_016967	50913.0	Mm.37289	NM_016967	ENSMUSG00000039830	Olig2	AI604895|Bhlhb1|Olg-2|Oligo2|RK17|bHLHe19	oligodendrocyte transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173107515-2	chr2	173107015	173108015	+	827.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355185, intron 7 of 10)	intron (NM_001355185, intron 7 of 10)	12010.0	NM_001081387	664799.0	Mm.389396	NM_001081387	ENSMUSG00000070495	Ctcfl	Boris	CCCTC-binding factor (zinc finger protein)-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62207495-2	chr10	62206995	62207995	+	827.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 1 of 7)	intron (NM_197996, intron 1 of 7)	-13268.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167931019-2	chr2	167930519	167931519	+	827.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1308.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-114838370-2	chr3	114837870	114838870	+	827.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-65708.0	NM_153458	229759.0	Mm.54183	NM_153157	ENSMUSG00000027965	Olfm3	B230206G02Rik	olfactomedin 3	protein-coding	3.0	4.0	1.0	3.0	4.0	0.5
Merged-chr11-119035919-2	chr11	119035419	119036419	+	827.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4994.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95881232-2	chr3	95880732	95881732	+	827.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033302, exon 2 of 6)	exon (NM_001033302, exon 2 of 6)	996.0	NM_001033302	229599.0	Mm.331218	NM_001033302	ENSMUSG00000038550	Ciart	Chrono|Gm129	circadian associated repressor of transcription	protein-coding	1.5	0.5	0.5	1.0	1.0	0.5
Merged-chr15-6540185-2	chr15	6539685	6540685	+	827.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39662.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-174474586-2	chr2	174474086	174475086	+	827.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1645.0	NM_025531	66390.0	Mm.182294	NM_025531	ENSMUSG00000016257	Prelid3b	2310042G06Rik|AA407013|Slmo2	PRELI domain containing 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67814129-2	chr10	67813629	67814629	+	827.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98533.0	NM_178679	216049.0	Mm.268346	NM_178679	ENSMUSG00000037855	Zfp365	AI839779|AV340892|DBZ|Su48|Znf365|talanin	zinc finger protein 365	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-14862571-2	chr4	14862071	14863071	+	827.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1648.0	NM_028264	72519.0	Mm.279158	NM_028264	ENSMUSG00000028221	Tmem55a	2610319K07Rik|AI315591|AV001360|Pip4p2	transmembrane protein 55A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128705557-2	chr4	128705057	128706057	+	827.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 2 of 14)	B4A|SINE|B4	16819.0	NM_018774	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0.0	3.0	0.5	4.0	3.5	1.0
Merged-chr10-80753187-2	chr10	80752687	80753687	+	827.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2016.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123059945-2	chr5	123059445	123060445	+	827.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-12929.0	NM_001347456	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	0.0	0.5	0.0	4.0	3.5	1.0
Merged-chr8-3517480-2	chr8	3516980	3517980	+	827.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152827, intron 2 of 31)	intron (NR_152827, intron 2 of 31)	617.0	NR_152827	50767.0	Mm.23085	NM_015801	ENSMUSG00000004565	Pnpla6	AI661849|MSws|Nte	patatin-like phospholipase domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141360512-2	chr4	141360012	141361012	+	827.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7680.0	NM_001085513	277743.0	Mm.294614	NM_001085513	ENSMUSG00000006218	Fam131c	Gm693	family with sequence similarity 131, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70720052-2	chr11	70719552	70720552	+	827.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153103, intron 18 of 22)	B4A|SINE|B4	14062.0	NR_105890	102465557.0		NR_105890	ENSMUSG00000105932	Mir6925	mmu-mir-6925	microRNA 6925	ncRNA	8.0	24.5	18.0	2.0	23.0	26.0
Merged-chr2-60021240-2	chr2	60020740	60021740	+	827.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 2 of 35)	ID_B1|SINE|B4	104500.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107112760-2	chr3	107112260	107113260	+	827.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008417, exon 3 of 3)	3' UTR (NM_008417, exon 3 of 3)	11193.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0.0	1.0	3.0	2.0	18.0	7.0
Merged-chr4-103121163-2	chr4	103120663	103121663	+	827.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039081, intron 1 of 12)	intron (NM_001039081, intron 1 of 12)	1773.0	NM_001039081	71148.0	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73909226-2	chr12	73908726	73909726	+	827.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010431, intron 1 of 14)	intron (NM_010431, intron 1 of 14)	1359.0	NM_001313919	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152333190-4	chr4	152332690	152333690	+	827.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_102292, exon 5 of 5)	non-coding (NR_102292, exon 5 of 5)	-5461.0	NM_029216	269610.0	Mm.40192	NM_029216	ENSMUSG00000005045	Chd5	4930532L22Rik|AW060752|B230399N07Rik|CHD-5	chromodomain helicase DNA binding protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21219137-2	chr9	21218637	21219637	+	827.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11B|LTR|ERVK	20195.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122806950-2	chr10	122806450	122807450	+	827.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 3 of 9)	B3|SINE|B2	127635.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0.0	3.0	12.5	8.5	7.0	14.0
Merged-chr19-43678896-2	chr19	43678396	43679396	+	827.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	3718.0	NR_045645	100502982.0	Mm.313570	NR_045645		BC037704	-	cDNA sequence BC037704	ncRNA	13.5	22.5	13.0	7.0	22.5	12.5
Merged-chr3-88530698-2	chr3	88530198	88531198	+	827.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1697.0	NM_001029890	72640.0	Mm.275154	NM_001029890	ENSMUSG00000074480	Mex3a	2700083E18Rik|Gm411|Rkhd4	mex3 RNA binding family member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-77026203-2	chr16	77025703	77026703	+	827.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 1 of 23)	intron (NM_013918, intron 1 of 23)	12134.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-70315377-2	chr16	70314877	70315877	+	827.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 1 of 15)	intron (NM_028803, intron 1 of 15)	1428.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	21.0	20.0	23.0	0.5	20.5	12.0
Merged-chr15-76726164-2	chr15	76725664	76726664	+	827.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 8 of 10)	intron (NM_198420, intron 8 of 10)	-2319.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91884357-4	chr16	91883867	91884867	+	827.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	47263.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	1.0	0.0	1.0	1.0	1.0	1.0
Merged-chr11-70975091-2	chr11	70974591	70975591	+	827.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252415, intron 6 of 6)	intron (NM_001252415, intron 6 of 6)	4891.0	NM_001252415	69723.0	Mm.275691	NM_027186	ENSMUSG00000018449	Rpain	2400006N03Rik|Rip	RPA interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-138482136-2	chr3	138481614	138482614	+	827.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175224, intron 2 of 10)	intron (NM_175224, intron 2 of 10)	7268.0	NM_175224	75624.0	Mm.26833	NM_175224	ENSMUSG00000005813	Metap1	1700029C17Rik|AW047992|mKIAA0094	methionyl aminopeptidase 1	protein-coding	5.5	27.0	6.5	4.0	0.0	0.0
Merged-chr14-105542788-2	chr14	105542288	105543288	+	827.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44000.0	NR_045921	74864.0	Mm.159344	NR_045921	ENSMUSG00000022116	4930449E01Rik	-	RIKEN cDNA 4930449E01 gene	ncRNA	0.0	0.0	0.0	0.0	3.5	0.0
Merged-chr13-54688771-2	chr13	54688271	54689271	+	827.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146025)	promoter-TSS (NM_001146025)	-571.0	NM_001146027	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104780907-6	chr3	104780384	104781384	+	827.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027982)	promoter-TSS (NM_027982)	-172.0	NM_027982	71887.0	Mm.379204	NM_027982	ENSMUSG00000002228	Ppm1j	2310008J22Rik|PP2Czeta|Ppp2cz	protein phosphatase 1J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-85076506-4	chr15	85076001	85077001	+	827.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080470, intron 19 of 24)	RLTR42-int|LTR|ERVK	33759.0	NM_001356616	73225.0	Mm.247535	NM_133750	ENSMUSG00000022434	Fam118a	-	family with sequence similarity 118, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100629694-4	chr11	100629216	100630216	+	827.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177790, intron 6 of 7)	intron (NM_177790, intron 6 of 7)	6761.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	15.0	21.5	4.5	0.5	9.5	2.5
Merged-chr9-105053962-4	chr9	105053451	105054451	+	827.445801	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053159, intron 1 of 9)	intron (NM_053159, intron 1 of 9)	683.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	70.5	130.5	111.0	87.5	200.5	116.5
Merged-chr8-12755516-3	chr8	12755021	12756021	+	827.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1495.0	NM_015804	50770.0	Mm.257837	NM_015804	ENSMUSG00000031441	Atp11a	4930558F19Rik|AU040868|Atpc1h|Ih	ATPase, class VI, type 11A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143057365-3	chr7	143056897	143057897	+	827.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133655, intron 1 of 7)	intron (NM_133655, intron 1 of 7)	-3711.0	NR_110354	97423.0	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58977468-3	chr11	58976964	58977964	+	827.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290988)	promoter-TSS (NM_001290988)	-629.0	NM_001290988	94091.0	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	14.5	86.0	61.0	6.0	33.5	46.0
Merged-chr9-37041229-3	chr9	37040733	37041733	+	827.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 2 of 12)	L2c|LINE|L2	106089.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152905997-4	chr3	152905485	152906485	+	827.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	76222.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	0.0	12.0	6.0	14.5	0.0	3.5
Merged-chr3-116837182-3	chr3	116836640	116837640	+	827.43335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22427.0	NM_001113478	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	11.5	0.0	10.0	7.5	2.0	7.5
Merged-chr15-80081384-3	chr15	80080897	80081897	+	827.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013762, intron 3 of 9)	intron (NM_013762, intron 3 of 9)	1509.0	NR_028281	100302600.0		NR_028281		Snord43	MBII-47	small nucleolar RNA, C/D box 43	snoRNA	14.0	13.5	3.5	0.0	6.0	6.5
Merged-chr2-4918385-2	chr2	4917885	4918885	+	827.416626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010726)	promoter-TSS (NM_010726)	-611.0	NM_010726	16922.0	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	9.5	18.5	4.0	6.0	25.0	7.5
Merged-chr17-29432836-3	chr17	29432348	29433348	+	827.4111330000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-58197.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	57.0	95.5	73.5	19.0	38.5	44.0
Merged-chr2-129408660-4	chr2	129408145	129409145	+	827.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37506.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	4.5	3.0	12.5	8.0	11.0	6.0
Merged-chr15-79358530-2	chr15	79358030	79359030	+	827.400024	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001304830, exon 3 of 3)	3' UTR (NM_001304830, exon 3 of 3)	10128.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75786194-4	chr7	75785702	75786702	+	827.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-62136.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182906944-3	chr1	182906448	182907448	+	827.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-47840.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr19-55868130-4	chr19	55867636	55868636	+	827.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-27185.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70233744-4	chr12	70233222	70234222	+	827.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045174, intron 4 of 4)	intron (NR_045174, intron 4 of 4)	5881.0	NR_045174	414124.0	Mm.416164	NR_045174	ENSMUSG00000085298	F730035M05Rik	-	RIKEN cDNA F730035M05 gene	ncRNA	1.5	14.0	4.0	0.0	6.0	0.5
Merged-chr1-80756101-2	chr1	80755601	80756601	+	827.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	2452.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125360948-2	chr6	125360448	125361448	+	827.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011609, intron 7 of 9)	intron (NM_011609, intron 7 of 9)	11225.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	3.0	12.0	17.5	13.0	21.0	5.5
Merged-chr6-91680265-2	chr6	91679765	91680765	+	827.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3802.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181600390-2	chr2	181599890	181600890	+	827.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133701)	promoter-TSS (NM_133701)	-929.0	NM_133701	68879.0	Mm.292001	NM_133701	ENSMUSG00000002455	Prpf6	1190003A07Rik|2610031L17Rik|ANT-1|U5-102K	pre-mRNA splicing factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57742980-2	chr6	57742480	57743480	+	827.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL_2A-int|LTR|ERVL	40525.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56929747-2	chr17	56929247	56930247	+	827.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_022328, intron 1 of 11)	intron (NM_022328, intron 1 of 11)	5641.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111794774-2	chr13	111794274	111795274	+	827.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	14219.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119336271-2	chr9	119335768	119336768	+	827.333374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010851, exon 6 of 6)	3' UTR (NM_010851, exon 6 of 6)	3772.0	NM_010851	17874.0	Mm.213003	NM_010851	ENSMUSG00000032508	Myd88	-	myeloid differentiation primary response gene 88	protein-coding	1.0	3.5	6.5	4.0	11.5	4.0
Merged-chr9-9682520-4	chr9	9682028	9683028	+	827.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033359, intron 17 of 20)	B4A|SINE|B4	-211903.0	NR_105745	102466147.0		NR_105745	ENSMUSG00000098408	Mir6237	Gm27411|mmu-mir-6237	microRNA 6237	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88867318-3	chr15	88866827	88867827	+	827.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5133.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12444156-2	chr19	12443656	12444656	+	827.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER110-int|LTR|ERV1	16251.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	8.5	22.5	14.5	15.0	16.0	18.0
Merged-chr19-53945506-4	chr19	53945033	53946033	+	827.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195338)	promoter-TSS (NM_001195338)	657.0	NM_019658	56392.0	Mm.228669	NM_019658	ENSMUSG00000024976	Shoc2	AU017287|Sur8|mKIAA0862	soc-2 (suppressor of clear) homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17615975-4	chr6	17615491	17616491	+	827.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21019.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	4.0	2.0	4.0	4.5	2.0	4.0
Merged-chr10-15300877-3	chr10	15300381	15301381	+	827.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-490896.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-33904363-4	chr1	33903863	33904863	+	827.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 1 of 6)	B4|SINE|B4	3258.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-33003757-4	chr5	33003232	33004232	+	827.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15084.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	0.5	19.5	9.5	11.0	24.5	0.0
Merged-chr4-126405264-4	chr4	126404756	126405756	+	827.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153402, intron 3 of 18)	intron (NM_153402, intron 3 of 18)	24286.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21137420-4	chr9	21136926	21137926	+	827.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6151.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110447386-4	chr5	110446890	110447890	+	827.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317042, intron 1 of 2)	intron (NM_001317042, intron 1 of 2)	1113.0	NM_001317042	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	7.5	13.5	7.0	9.0	13.5	7.0
Merged-chr18-12238015-2	chr18	12237515	12238515	+	827.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-1629.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-82913920-4	chr10	82913428	82914428	+	827.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	47302.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	0.0	4.0	4.0	2.5	0.0	2.0
Merged-chr10-16088972-2	chr10	16088472	16089472	+	827.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	297195.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62104718-2	chr18	62104218	62105218	+	827.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75263.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132551505-3	chr7	132551009	132552009	+	827.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24889.0	NM_016978	18242.0	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82148758-3	chr15	82148265	82149265	+	827.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033218, intron 1 of 18)	intron (NM_033218, intron 1 of 18)	1496.0	NM_033218	20788.0	Mm.38016	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83200368-3	chr8	83199838	83200838	+	827.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111304, intron 1 of 20)	intron (NM_001111304, intron 1 of 20)	34986.0	NM_027758	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	78.5	184.5	93.0	24.5	99.0	58.0
Merged-chr2-120037989-4	chr2	120037497	120038497	+	827.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145378, intron 11 of 19)	intron (NM_145378, intron 11 of 19)	4564.0	NM_145378	211429.0	Mm.41467	NM_145378	ENSMUSG00000098488	Pla2g4b	A030011C02Rik|Gm1013|cPLA2-beta	phospholipase A2, group IVB (cytosolic)	protein-coding	2.0	2.5	2.0	1.0	0.0	7.0
Merged-chr19-11404665-4	chr19	11404155	11405155	+	827.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3006.0	NM_029499	64380.0	Mm.440715	NM_029499	ENSMUSG00000024675	Ms4a4c	5830413L19Rik|AI449185|Ms4a9	membrane-spanning 4-domains, subfamily A, member 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111467486-4	chr13	111466980	111467980	+	827.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028487, intron 2 of 12)	intron (NM_028487, intron 2 of 12)	22647.0	NM_028487	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87122413-8	chr6	87121917	87122917	+	827.197937	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17671.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150135438-4	chr2	150134959	150135959	+	827.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023266, intron 1 of 2)	intron (NM_023266, intron 1 of 2)	1219.0	NM_023266	104348.0	Mm.485851	NM_023266	ENSMUSG00000068134	Zfp120	AI315103|E030042N05Rik|F80|MZF31|Zfp844	zinc finger protein 120	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-77423838-2	chr8	77423338	77424338	+	827.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 5 of 22)	intron (NM_030113, intron 5 of 22)	-93218.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80697958-2	chr10	80697458	80698458	+	827.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	3862.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173426894-2	chr1	173426416	173427416	+	827.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 1 of 8)	RLTR49|LTR|ERVK	6312.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	103.5	304.5	190.5	120.5	238.5	160.0
Merged-chr15-59412874-4	chr15	59412354	59413354	+	827.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 2 of 4)	intron (NM_001164604, intron 2 of 4)	38656.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83066041-3	chr11	83065563	83066563	+	827.133362	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011408, intron 1 of 1)	intron (NM_011408, intron 1 of 1)	951.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-17166834-4	chr11	17166334	17167334	+	827.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024459, intron 1 of 5)	intron (NM_024459, intron 1 of 5)	7536.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3513018-3	chr4	3512514	3513514	+	827.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24076.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	10.5	17.0	16.0	23.0	14.5	11.5
Merged-chr5-8355785-3	chr5	8355286	8356286	+	827.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 2 of 28)	RSINE1|SINE|B4	12374.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-89959155-3	chr16	89958643	89959643	+	827.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145886, intron 1 of 27)	intron (NM_001145886, intron 1 of 27)	1684.0	NM_009384	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-177464863-3	chr2	177464355	177465355	+	827.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177568, intron 1 of 3)	intron (NM_001177568, intron 1 of 3)	113.0	NM_001177568	628308.0	Mm.460436	NM_001177568	ENSMUSG00000078866	Zfp970	Gm14420	zinc finger protein 970	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55494260-2	chr12	55493760	55494760	+	827.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-1613.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87857023-4	chr1	87856526	87857526	+	827.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177646, intron 1 of 29)	L1MB7|LINE|L1	-2727.0	NR_136921	100503175.0	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-3157557-3	chr17	3157073	3158073	+	827.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134123, intron 3 of 19)	intron (NM_134123, intron 3 of 19)	42601.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	0.0	2.0	0.0	2.0	1.0	0.0
Merged-chr12-16864664-4	chr12	16864155	16865155	+	827.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30323.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	20.5	11.5	32.0	16.0	27.0	24.5
Merged-chr2-30955050-2	chr2	30954550	30955550	+	827.083313	f1_balb.idr|f1_c57bl6.idr	intron (NM_133673, intron 2 of 4)	intron (NM_133673, intron 2 of 4)	2049.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94098289-3	chr10	94097769	94098769	+	827.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 5 of 20)	intron (NM_053072, intron 5 of 20)	-49662.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	3.0	5.5	11.5	0.0	7.5	8.5
Merged-chr12-80846386-3	chr12	80845851	80846851	+	827.0476070000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178682, intron 2 of 5)	intron (NM_178682, intron 2 of 5)	55819.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99818483-2	chr7	99817956	99818956	+	827.041626	f1_balb.idr|f1_c57bl6.idr	intron (NM_016720, intron 2 of 2)	MMVL30-int|LTR|ERV1	9961.0	NM_016720	50877.0	Mm.103703	NM_016720	ENSMUSG00000035239	Neu3	-	neuraminidase 3	protein-coding	15.0	13.0	8.0	1.5	9.0	3.5
Merged-chr9-22129745-4	chr9	22129233	22130233	+	827.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102404, intron 2 of 4)	intron (NM_001102404, intron 2 of 4)	865.0	NM_007388	11433.0	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62726791-3	chr18	62726291	62727291	+	827.027771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168423, intron 1 of 4)	MTEb|LTR|ERVL-MaLR	14596.0	NM_001168423	100038417.0	Mm.387557	NM_001168423	ENSMUSG00000073551	Spink13	Gm10534|Spink5l3	serine peptidase inhibitor, Kazal type 13	protein-coding	0.0	0.0	0.5	2.5	1.0	0.0
Merged-chr8-128059995-3	chr8	128059449	128060449	+	827.007935	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	218276.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0.0	2.0	0.0	1.0	1.0	1.0
Merged-chr6-83685800-5	chr6	83685235	83686235	+	827.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7878.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	0.0	0.0	1.0	3.0	2.0	11.0
Merged-chr4-133193404-1	chr4	133192904	133193904	+	827.0	f1_c57bl6.idr	intron (NM_153423, intron 7 of 8)	intron (NM_153423, intron 7 of 8)	-2251.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	0.0	0.0	0.0	0.0	1.5	1.0
Merged-chr14-47011851-2	chr14	47011351	47012351	+	827.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163433, intron 1 of 11)	intron (NM_001163433, intron 1 of 11)	10511.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	21.0	6.5	7.5	26.5	8.5	13.0
Merged-chr11-100670882-2	chr11	100670382	100671382	+	827.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20189.0	NM_177790	278304.0	Mm.274734	NM_177790	ENSMUSG00000014198	Zfp385c	A930006D11Rik|Znf385c	zinc finger protein 385C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-43399556-2	chr11	43399056	43400056	+	827.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25095.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	9.5	0.0	1.0	0.0	0.0	0.5
Merged-chr10-37191080-2	chr10	37190580	37191580	+	827.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-52154.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35065566-2	chr17	35065066	35066066	+	827.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_001462)	TTS (NR_001462)	618.0	NM_001033221	106722.0	Mm.390956	NM_001033221	ENSMUSG00000073414	Mpig6b	AU023871|C6orf25|G6b|Ng31	megakaryocyte and platelet inhibitory receptor G6b	protein-coding	5.0	1.0	7.5	3.0	1.0	0.5
Merged-chr9-47747133-2	chr9	47746608	47747608	+	827.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	71100.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	2.5	10.0	10.0	11.0	11.5	1.5
Merged-chr1-78552514-1	chr1	78552014	78553014	+	827.0	f1_balb.idr	Intergenic	Lx|LINE|L1	41454.0	NM_026713	68393.0	Mm.41325	NM_026713	ENSMUSG00000012187	Mogat1	0610030A14Rik|1110064N14Rik|Dgat2l|Dgat2l1|MGAT1|WI1-2612I11.1|mDC2	monoacylglycerol O-acyltransferase 1	protein-coding	0.0	1.5	5.0	4.5	0.0	4.5
Merged-chr2-52961721-4	chr2	52961315	52962315	+	827.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	103947.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70904249-1	chr8	70903749	70904749	+	827.0	f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1725.0	NM_173013	270058.0	Mm.248559	NM_173013	ENSMUSG00000019261	Map1s	6430517J16Rik|Bpy2ip1|Map8|Mtap1s|VCY2IP1	microtubule-associated protein 1S	protein-coding	15.0	36.0	37.5	31.0	28.5	27.0
Merged-chr1-34437238-2	chr1	34436738	34437738	+	827.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027159, exon 5 of 5)	3' UTR (NM_027159, exon 5 of 5)	2434.0	NM_027159	69668.0	Mm.379170	NM_027159	ENSMUSG00000042111	Ccdc115	2310061I09Rik|Ccp1	coiled-coil domain containing 115	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-22814850-1	chr14	22814350	22815350	+	827.0	f0_balb.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-272052.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-15080648-3	chr4	15080147	15081147	+	827.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178617, intron 3 of 12)	intron (NM_178617, intron 3 of 12)	68484.0	NM_178617	69352.0	Mm.389031	NM_178617	ENSMUSG00000040536	Necab1	1700003H21Rik|Efcbp1|STIP-1	N-terminal EF-hand calcium binding protein 1	protein-coding	1.5	3.0	1.5	0.0	0.0	4.0
Merged-chr15-34342825-1	chr15	34342325	34343325	+	827.0	f0_balb.idr	intron (NM_001358780, intron 2 of 18)	intron (NM_001358780, intron 2 of 18)	15047.0	NM_001256161	77358.0	Mm.402759	NM_001256161	ENSMUSG00000094447	9430069I07Rik	-	RIKEN cDNA 9430069I07 gene	protein-coding	0.0	1.5	0.0	0.0	1.0	0.0
Merged-chr14-31215706-2	chr14	31215206	31216206	+	827.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2167.0	NM_001025379	218877.0	Mm.27812	NM_001025379	ENSMUSG00000021904	Sema3g	AK129018	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139338572-2	chr5	139338072	139339072	+	827.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_197980, intron 2 of 2)	intron (NM_197980, intron 2 of 2)	6594.0	NM_197980	68033.0	Mm.261064	NM_197980	ENSMUSG00000045438	Cox19	1810074D02Rik|2810437L13Rik	cytochrome c oxidase assembly protein 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-145119100-2	chr5	145118600	145119600	+	827.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023142, intron 1 of 9)	B1_Mm|SINE|Alu	4844.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	2.0	13.0	0.0	0.5	6.0	5.5
Merged-chr3-79248267-1	chr3	79247767	79248767	+	827.0	f0_balb.idr	non-coding (NR_045502, exon 2 of 3)	non-coding (NR_045502, exon 2 of 3)	35348.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	5.0	35.0	21.0	15.0	23.0	13.0
Merged-chr19-6367489-2	chr19	6366989	6367989	+	827.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360393, intron 2 of 11)	MT2B|LTR|ERVL	3799.0	NR_122118	22668.0	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103146858-2	chr15	103146358	103147358	+	827.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045743)	promoter-TSS (NR_045743)	-30.0	NR_045743	432989.0	Mm.383979	NR_045743	ENSMUSG00000097003	D930007P13Rik	-	Riken cDNA D930007P13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21678641-2	chr14	21678141	21679141	+	827.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013826, intron 3 of 3)	intron (NM_001013826, intron 3 of 3)	35935.0	NM_001013826	435391.0	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35231108-1	chr17	35230608	35231608	+	827.0	f1_c57bl6.idr	intron (NM_010909, intron 2 of 3)	ID_B1|SINE|B4	-3902.0	NM_001347351	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	0.0	14.5	1.5	0.5	1.0	2.0
Merged-chr7-56050934-2	chr7	56050434	56051434	+	827.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010418, exon 2 of 93)	exon (NM_010418, exon 2 of 93)	545.0	NM_001360080	15204.0	Mm.20929	NM_010418	ENSMUSG00000030451	Herc2	D15F32S1h|D7H15F32S1|D7H15F37S1|jdf2|mKIAA0393|rjs	HECT and RLD domain containing E3 ubiquitin protein ligase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101261820-2	chr15	101261255	101262255	+	827.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5091.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	27.0	68.0	69.5	7.5	48.5	29.0
Merged-chr11-114928657-2	chr11	114928157	114929157	+	827.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199221, intron 1 of 3)	intron (NM_199221, intron 1 of 3)	5729.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32281413-2	chr19	32280913	32281913	+	827.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168525, intron 2 of 9)	intron (NM_001168525, intron 2 of 9)	67903.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	4.5	0.0	5.0	5.0	0.0	0.5
Merged-chr7-127852984-2	chr7	127852484	127853484	+	827.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11176.0	NM_009294	20909.0	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70237776-1	chr9	70237276	70238276	+	827.0	f0_balb.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	30426.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4918524-4	chr18	4918019	4919019	+	827.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	106033.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	4.0	5.0	2.0	2.0	2.5	0.5
Merged-chr9-45395224-3	chr9	45394721	45395721	+	826.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_022004, exon 8 of 8)	3' UTR (NM_022004, exon 8 of 8)	-4488.0	NR_028499	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0.0	1.0	2.5	0.5	1.5	3.5
Merged-chr1-79858545-4	chr1	79858031	79859031	+	826.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009255, exon 1 of 9)	5' UTR (NM_009255, exon 1 of 9)	134.0	NM_009255	20720.0	Mm.3093	NM_009255	ENSMUSG00000026249	Serpine2	B230326M24Rik|PAI-1|PI-7|PI7|PN-1|Spi4	serine (or cysteine) peptidase inhibitor, clade E, member 2	protein-coding	2.0	0.0	0.0	1.5	0.0	0.5
Merged-chr2-19631438-3	chr2	19630913	19631913	+	826.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	26484.0	NR_033642	100041244.0	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108185908-3	chr3	108185378	108186378	+	826.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287093)	promoter-TSS (NM_001287093)	-411.0	NM_001287093	229715.0	Mm.275752	NM_146137	ENSMUSG00000050947	Amigo1	Amigo|ali2	adhesion molecule with Ig like domain 1	protein-coding	1.0	0.0	0.0	1.5	0.0	0.0
Merged-chr19-5613284-4	chr19	5612866	5613866	+	826.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3272.0	NM_178637	81601.0	Mm.228930	NM_178637	ENSMUSG00000024926	Kat5	AI839539|CPLA2|Htatip|Htatip1|PLIP|Tip55|Tip60	K(lysine) acetyltransferase 5	protein-coding	6.0	11.0	12.5	12.0	22.5	10.0
Merged-chr6-143373895-3	chr6	143373392	143374392	+	826.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	128004.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110841209-3	chr5	110840705	110841705	+	826.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016681, intron 1 of 14)	intron (NM_016681, intron 1 of 14)	1188.0	NM_016681	50883.0	Mm.279308	NM_016681	ENSMUSG00000029521	Chek2	CHK2|Cds1|HUCDS1|Rad53	checkpoint kinase 2	protein-coding	9.5	9.0	2.0	5.0	7.5	5.0
Merged-chr12-80791949-5	chr12	80791431	80792431	+	826.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	1399.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-75316798-4	chr1	75316165	75317165	+	826.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110831, intron 2 of 14)	intron (NM_001110831, intron 2 of 14)	352.0	NM_016878	13437.0	Mm.24680	NM_016878	ENSMUSG00000026209	Dnpep	AA407814	aspartyl aminopeptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54685676-2	chr14	54685174	54686174	+	826.916626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021437)	promoter-TSS (NM_021437)	-497.0	NM_021437	58248.0	Mm.197509	NM_021437	ENSMUSG00000040822	1700123O20Rik	MNCb-2990	RIKEN cDNA 1700123O20 gene	protein-coding	5.0	47.5	22.0	7.0	42.0	56.0
Merged-chr12-51870370-2	chr12	51869873	51870873	+	826.916626	f0_balb.idr|f1_balb.idr	Intergenic	RMER16_Mm|LTR|ERVK	-40837.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	10.5	0.0	5.0	27.5	30.5	18.0
Merged-chr8-83622411-4	chr8	83621826	83622826	+	826.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13778.0	NM_001308227	81489.0	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	3.0	7.5	4.0	8.0	0.0	0.5
Merged-chr2-12206492-4	chr2	12205898	12206898	+	826.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001309, intron 13 of 29)	RLTR9C|LTR|ERVK	-94848.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-68223433-4	chr17	68222985	68223985	+	826.895874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50312.0	NM_177278	320858.0	Mm.137356	NM_177278	ENSMUSG00000041565	L3mbtl4	A730037L19Rik|D930040M24Rik	L3MBTL4 histone methyl-lysine binding protein	protein-coding	10.5	3.0	3.0	10.5	3.0	2.5
Merged-chr19-16038033-3	chr19	16037544	16038544	+	826.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52969.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	2.5	29.5	14.5	23.0	10.0	26.5
Merged-chr8-104051178-3	chr8	104050688	104051688	+	826.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50437.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-40882200-3	chr17	40881674	40882674	+	826.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1616.0	NM_027834	71583.0	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding	15.0	28.0	10.0	4.5	7.5	8.0
Merged-chr13-92576899-4	chr13	92576356	92577356	+	826.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030237)	promoter-TSS (NM_030237)	-624.0	NM_030237	79401.0	Mm.23520	NM_030237	ENSMUSG00000046957	Spz1	1700027M20Rik|AI429130	spermatogenic leucine zipper 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32758994-4	chr19	32758499	32759499	+	826.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 1 of 8)	intron (NM_008960, intron 1 of 8)	1422.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	19.0	50.0	28.0	18.5	36.0	35.0
Merged-chr10-80938662-2	chr10	80938162	80939162	+	826.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8571.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57130973-4	chr16	57130479	57131479	+	826.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138599, intron 1 of 11)	intron (NM_138599, intron 1 of 11)	9265.0	NM_138599	28185.0	Mm.196933	NM_138599	ENSMUSG00000022752	Tomm70a	2610044B22Rik|D16Ium22|D16Ium22e|D16Wsu109e|Tom70|Tomm70|mKIAA0719	translocase of outer mitochondrial membrane 70A	protein-coding	12.5	34.0	2.5	2.5	10.0	3.5
Merged-chr12-3824347-2	chr12	3823847	3824847	+	826.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	L2a|LINE|L2	17187.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-68610937-2	chr14	68610437	68611437	+	826.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_183366, exon 19 of 22)	exon (NM_183366, exon 19 of 22)	-28865.0	NM_021475	58860.0	Mm.36742	NM_021475	ENSMUSG00000022057	Adamdec1	2210414L24Rik|AI574231|Dcsn	ADAM-like, decysin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-20234222-2	chr12	20233722	20234722	+	826.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	581557.0	NR_015521	69513.0	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84594655-2	chr8	84594155	84595155	+	826.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252060, intron 31 of 47)	intron (NM_001252060, intron 31 of 47)	68197.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.0	0.5	1.5	22.5	11.5	0.5
Merged-chr9-23597483-4	chr9	23596975	23597975	+	826.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	374399.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-9071531-4	chr5	9071032	9072032	+	826.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	-29205.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3914715-4	chr11	3914242	3915242	+	826.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153142)	promoter-TSS (NM_153142)	-78.0	NM_153142	103710.0	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-79584646-2	chr17	79584146	79585146	+	826.8000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30254.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60748615-3	chr13	60748145	60749145	+	826.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 20 of 26)	intron (NM_134062, intron 20 of 26)	37719.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0.0	0.0	1.0	0.0	6.0	1.0
Merged-chr2-170401634-4	chr2	170401144	170402144	+	826.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029815, intron 4 of 12)	intron (NM_029815, intron 4 of 12)	26201.0	NM_001164369	76960.0	Mm.240850	NM_029815	ENSMUSG00000013523	Bcas1	2210416M21Rik|9030223A09Rik|AI841227|NABC1	breast carcinoma amplified sequence 1	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr2-144300286-4	chr2	144299799	144300799	+	826.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	29395.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107928070-3	chr13	107927589	107928589	+	826.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38025.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	6.0	5.5	7.0	8.0	2.0	7.5
Merged-chr17-78245732-6	chr17	78245244	78246244	+	826.777771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 2 of 16)	intron (NM_015800, intron 2 of 16)	45496.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-16882668-3	chr12	16882152	16883152	+	826.766663	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-12326.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	105.0	216.0	169.0	94.0	210.0	190.0
Merged-chr4-59239820-2	chr4	59239320	59240320	+	826.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20231.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	11.5	16.0	17.5	5.0	27.0	16.0
Merged-chr15-26016525-4	chr15	26016031	26017031	+	826.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32165.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24453038-4	chr5	24452557	24453557	+	826.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359881, intron 1 of 15)	intron (NM_001359881, intron 1 of 15)	880.0	NM_139153	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117959179-2	chr11	117958679	117959679	+	826.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10187.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117842079-3	chr5	117841568	117842568	+	826.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-24771.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0.0	0.0	2.5	0.0	0.0	2.5
Merged-chr11-49086982-4	chr11	49086416	49087416	+	826.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271676)	promoter-TSS (NM_001271676)	-101.0	NM_001271676	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173738414-2	chr1	173737914	173738914	+	826.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204910, intron 1 of 7)	Lx8|LINE|L1	3395.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	52.0	109.5	76.0	29.5	93.0	42.5
Merged-chr2-165322522-2	chr2	165322022	165323022	+	826.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_080287, intron 1 of 20)	intron (NM_080287, intron 1 of 20)	-1696.0	NM_001302752	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40257442-4	chr12	40256936	40257936	+	826.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34072.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122150673-7	chr2	122150193	122151193	+	826.68573	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009735, intron 1 of 3)	intron (NM_009735, intron 1 of 3)	3006.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	6.5	54.5	23.0	4.0	37.0	32.0
Merged-chr2-91080337-3	chr2	91079817	91080817	+	826.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-10002.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	18.5	46.0	42.0	23.5	35.0	38.0
Merged-chr2-121413125-3	chr2	121412617	121413617	+	826.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007952)	promoter-TSS (NM_007952)	675.0	NM_153075	212670.0	Mm.384318	NM_153075	ENSMUSG00000033486	Catsper2	-	cation channel, sperm associated 2	protein-coding	49.0	60.5	79.5	50.0	114.5	77.0
Merged-chr19-47932446-4	chr19	47931952	47932952	+	826.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5260.0	NM_001163267	381229.0	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141001427-2	chr7	141000927	141001927	+	826.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9317.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52240580-3	chr6	52240085	52241085	+	826.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001122950, exon 1 of 2)	5' UTR (NM_001122950, exon 1 of 2)	269.0	NM_001122950	15395.0	Mm.5	NM_008263	ENSMUSG00000000938	Hoxa10	Hox-1.8|Hoxa-10	homeobox A10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80157833-2	chr12	80157333	80158333	+	826.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24989.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86823977-2	chr6	86823477	86824477	+	826.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25463.0	NR_028298	67170.0	Mm.119489	NR_028298	ENSMUSG00000100164	2610306M01Rik	-	RIKEN cDNA 2610306M01 gene	ncRNA	0.0	1.5	0.5	0.5	1.5	2.5
Merged-chr15-81008468-2	chr15	81007968	81008968	+	826.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357669, intron 9 of 20)	intron (NM_001357669, intron 9 of 20)	30703.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108788255-2	chr3	108787755	108788755	+	826.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48597.0	NM_177859	329738.0	Mm.72322	NM_177859	ENSMUSG00000049565	Aknad1	4921525H12Rik	AKNA domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-118775591-4	chr12	118775080	118776080	+	826.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70749.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64925937-4	chr9	64925426	64926426	+	826.662476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144813, intron 9 of 9)	intron (NM_144813, intron 9 of 9)	25681.0	NM_144813	214111.0	Mm.156124	NM_144813	ENSMUSG00000034452	Slc24a1	-	solute carrier family 24 (sodium/potassium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-125439416-4	chr1	125438887	125439887	+	826.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3660.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99227759-4	chr5	99227321	99228321	+	826.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 10 of 13)	intron (NM_181318, intron 10 of 13)	25106.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-14874617-4	chr3	14874218	14875218	+	826.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11180.0	NM_007606	12350.0	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.0	8.5	5.0	1.0	6.5	6.0
Merged-chr11-100295583-4	chr11	100295141	100296141	+	826.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-24308.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76818706-4	chr15	76818242	76819242	+	826.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168288)	promoter-TSS (NM_001168288)	-572.0	NM_198420	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	6.5	21.5	14.5	7.5	24.5	17.5
Merged-chr11-73327497-2	chr11	73326997	73327997	+	826.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2244.0	NM_001045531	380709.0	Mm.340910	NM_001045531	ENSMUSG00000112920	Spata22	Gm882	spermatogenesis associated 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20553161-3	chr11	20552610	20553610	+	826.622253	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021372, intron 1 of 1)	intron (NM_021372, intron 1 of 1)	9857.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	18.5	35.5	18.0	12.5	29.0	20.5
Merged-chr1-93165571-3	chr1	93165064	93166064	+	826.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-2859.0	NM_001310428	381284.0	Mm.193346	NM_001310428	ENSMUSG00000084989	Crocc2	E030010N08Rik|Gm976	ciliary rootlet coiled-coil, rootletin family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-89197295-3	chr18	89196747	89197747	+	826.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178687)	promoter-TSS (NM_178687)	-180.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111576186-3	chr10	111575668	111576668	+	826.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18105.0	NR_045344	71321.0	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-50130601-4	chr18	50130115	50131115	+	826.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008292, intron 2 of 23)	intron (NM_008292, intron 2 of 23)	2414.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	4.0	3.5	7.0	7.0	12.0	7.0
Merged-chr4-43267135-4	chr4	43266615	43267615	+	826.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177195)	promoter-TSS (NM_177195)	-44.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	3.0	4.0	2.0	3.0	10.5	2.0
Merged-chr9-40320146-3	chr9	40319668	40320668	+	826.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	1155.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31297814-4	chr17	31297295	31298295	+	826.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242427, intron 1 of 19)	intron (NM_001242427, intron 1 of 19)	1571.0	NM_001242427	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45149974-3	chr19	45149510	45150510	+	826.544434	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021901)	promoter-TSS (NM_021901)	-705.0	NM_021901	21908.0	Mm.391203	NM_021901	ENSMUSG00000025215	Tlx1	Hox-11|Hox11|Tlx-1	T cell leukemia, homeobox 1	protein-coding	14.5	3.0	1.0	16.5	3.0	4.0
Merged-chr6-134274169-3	chr6	134273635	134274635	+	826.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122194.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	1.0	5.0	0.5	1.0	10.5	1.5
Merged-chr17-50293716-2	chr17	50293216	50294216	+	826.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277863)	promoter-TSS (NM_001277863)	-96.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	11.0	4.0	5.5	0.5	3.5	2.5
Merged-chr10-81386211-2	chr10	81385711	81386711	+	826.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105878)	promoter-TSS (NR_105878)	-136.0	NR_105878	102466763.0		NR_105878	ENSMUSG00000098811	Mir6913	Gm27788|mmu-mir-6913	microRNA 6913	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-81358069-2	chr16	81357569	81358569	+	826.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113208, intron 1 of 17)	intron (NM_001113208, intron 1 of 17)	157372.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-93962139-2	chr15	93961639	93962639	+	826.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35028.0	NR_045737	77248.0	Mm.410768	NR_045737	ENSMUSG00000116360	9430014N10Rik	-	RIKEN cDNA 9430014N10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83708465-2	chr17	83707965	83708965	+	826.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001171053, exon 2 of 14)	exon (NM_001171053, exon 2 of 14)	2302.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84010740-2	chr12	84010240	84011240	+	826.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_012006, intron 1 of 2)	intron (NM_012006, intron 1 of 2)	1238.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70084234-2	chr8	70083732	70084732	+	826.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177900, intron 1 of 4)	CpG	703.0	NM_177900	330790.0	Mm.152048	NM_177900	ENSMUSG00000007594	Hapln4	9330174O11|Bral2|Lpr4	hyaluronan and proteoglycan link protein 4	protein-coding	16.0	3.0	0.5	9.0	0.0	0.0
Merged-chr6-135167406-2	chr6	135166892	135167892	+	826.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013546, intron 1 of 3)	intron (NM_013546, intron 1 of 3)	823.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	106.5	176.5	159.5	129.0	252.5	232.5
Merged-chr10-81189296-2	chr10	81188796	81189796	+	826.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190473, intron 2 of 8)	B2_Mm2|SINE|B2	5378.0	NM_007828	13144.0	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24978594-2	chr2	24978094	24979094	+	826.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146251, intron 1 of 34)	intron (NM_146251, intron 1 of 34)	2561.0	NM_146251	241274.0	Mm.389243	NM_146251	ENSMUSG00000036833	Pnpla7	BC027342|E430013P11Rik|Nre	patatin-like phospholipase domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108154651-2	chr3	108154151	108155151	+	826.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305461, intron 1 of 2)	intron (NM_001305461, intron 1 of 2)	281.0	NM_001305461	229714.0	Mm.73666	NM_175470	ENSMUSG00000046793	Gpr61	-	G protein-coupled receptor 61	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60559601-2	chr11	60559101	60560101	+	826.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21918.0	NM_172943	268420.0	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46041905-1	chr4	46041405	46042405	+	826.5	f0_balb.idr	intron (NM_021883, intron 1 of 9)	intron (NM_021883, intron 1 of 9)	2683.0	NM_021883	21916.0	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120234077-3	chr11	120233618	120234618	+	826.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198423, intron 1 of 27)	CpG	1171.0	NM_198423	268515.0	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103962448-2	chr2	103961948	103962948	+	826.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142337, intron 1 of 3)	intron (NM_001142337, intron 1 of 3)	4453.0	NM_001142337	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184137441-2	chr1	184136941	184137941	+	826.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103060.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107120083-3	chr3	107119440	107120440	+	826.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18373.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	28.0	50.5	37.0	25.0	38.5	21.0
Merged-chr4-53413166-2	chr4	53412666	53413666	+	826.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-27247.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78035248-2	chr9	78034748	78035748	+	826.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-16710.0	NM_008103	14531.0	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1	protein-coding	2.5	0.0	0.0	0.0	0.5	1.0
Merged-chr10-68729586-2	chr10	68729086	68730086	+	826.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 1 of 5)	ORR1D2|LTR|ERVL-MaLR	5840.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182484406-2	chr1	182483906	182484906	+	826.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009794, intron 9 of 20)	intron (NM_009794, intron 9 of 20)	33204.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130808028-2	chr4	130807551	130808551	+	826.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	15514.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73150932-2	chr15	73150432	73151432	+	826.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	34015.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-130313743-2	chr10	130313243	130314243	+	826.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9109.0	NM_183264	67596.0	Mm.131264	NM_183264	ENSMUSG00000034833	Tespa1	5830405N20Rik|A430001F24Rik|AI450549	thymocyte expressed, positive selection associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75191909-2	chr11	75191409	75192409	+	826.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1426.0	NM_144491	116905.0	Mm.41496	NM_144491	ENSMUSG00000078789	Dph1	2310011M22Rik|4930488F09Rik|AW551873|Dph2l1|Ovca1	diphthamide biosynthesis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-90956925-2	chr1	90956425	90957425	+	826.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3817.0	NM_001101647	623503.0	Mm.471593	NM_001101647	ENSMUSG00000090550	Prlh	EG623503	prolactin releasing hormone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55787549-2	chr14	55787049	55788049	+	826.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164108, intron 3 of 9)	intron (NM_001164108, intron 3 of 9)	1308.0	NM_001164107	56532.0	Mm.46612	NM_019955	ENSMUSG00000022221	Ripk3	2610528K09Rik|AW107945|Rip3	receptor-interacting serine-threonine kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29269058-2	chr6	29268558	29269558	+	826.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3430.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25982681-2	chr15	25982181	25983181	+	826.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1685.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-37613661-2	chr15	37613161	37614161	+	826.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359845, intron 2 of 6)	intron (NM_001359845, intron 2 of 6)	66913.0	NM_001359840	52589.0	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17927280-2	chr16	17926780	17927780	+	826.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_153150, exon 4 of 9)	exon (NM_153150, exon 4 of 9)	939.0	NM_153150	13358.0	Mm.229291	NM_153150	ENSMUSG00000003528	Slc25a1	1300019P08Rik|2610100G11Rik|AI194714|Ctp|Dgsj|Slc20a3	solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99825504-2	chr15	99825004	99826004	+	826.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113545, intron 3 of 10)	intron (NM_001113545, intron 3 of 10)	-5355.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55107151-2	chr14	55106651	55107651	+	826.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303502)	promoter-TSS (NM_001303502)	-558.0	NM_007455	11766.0	Mm.238879	NM_007455	ENSMUSG00000040701	Ap1g2	Adtg2|G2ad	adaptor protein complex AP-1, gamma 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83397879-4	chr17	83397386	83398386	+	826.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357886, intron 1 of 21)	intron (NM_001357886, intron 1 of 21)	46955.0	NM_001357886	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101300149-2	chr7	101299649	101300649	+	826.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001111111, exon 2 of 18)	exon (NM_001111111, exon 2 of 18)	1939.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102311290-2	chr11	102310790	102311790	+	826.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011551, intron 7 of 20)	intron (NM_011551, intron 7 of 20)	5997.0	NM_001044383	21429.0	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	0.0	4.0	5.0	0.0	2.0	0.0
Merged-chr7-97174365-4	chr7	97173862	97174862	+	826.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	L1MA4A|LINE|L1	92611.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	5.5	6.5	6.5	2.5	6.0	1.5
Merged-chr12-108700205-3	chr12	108699636	108700636	+	826.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027299, intron 1 of 2)	intron (NM_027299, intron 1 of 2)	2170.0	NM_001171002	70059.0	Mm.207605	NM_027299	ENSMUSG00000021263	Degs2	2210008A03Rik|AI852933|DES2	delta(4)-desaturase, sphingolipid 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12575568-5	chr19	12574985	12575985	+	826.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026640, intron 1 of 3)	B1_Mm|SINE|Alu	1960.0	NM_026640	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	101.5	193.5	136.0	48.5	140.0	105.0
Merged-chr13-54822140-3	chr13	54821644	54822644	+	826.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32739.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	11.0	2.5	2.5	12.0	1.0	7.0
Merged-chr12-76265151-4	chr12	76264646	76265646	+	826.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138745, intron 1 of 27)	RLTR11B|LTR|ERVK	9914.0	NM_138745	108156.0	Mm.29584	NM_138745	ENSMUSG00000021048	Mthfd1	Dcs|E430024A07Rik|Mthfd	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24608906-3	chr2	24608378	24609378	+	826.399963	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042528, intron 44 of 46)	intron (NM_001042528, intron 44 of 46)	-133279.0	NM_011040	18510.0	Mm.2533	NM_011040	ENSMUSG00000026976	Pax8	Pax-8	paired box 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-45330475-4	chr8	45329995	45330995	+	826.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133969, intron 1 of 10)	intron (NM_133969, intron 1 of 10)	2701.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57919331-3	chr15	57918821	57919821	+	826.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356310, intron 2 of 19)	RMER1C|Other|Other	7122.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	0.0	9.5	3.0	4.0	0.0	4.0
Merged-chr7-126908041-3	chr7	126907527	126908527	+	826.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9749.0	NM_028389	68742.0	Mm.248646	NM_026827	ENSMUSG00000060538	Tmem219	1110032O16Rik|2900045G02Rik|IGFBP-3R	transmembrane protein 219	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-21941732-3	chr3	21941213	21942213	+	826.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-134939.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35470272-2	chr17	35469772	35470772	+	826.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_010391, intron 1 of 6)	CpG	183.0	NM_010391	15007.0	Mm.88795	NM_010391	ENSMUSG00000067235	H2-Q10	H-2Q10|Q10|Qa10	histocompatibility 2, Q region locus 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167842535-4	chr2	167842020	167843020	+	826.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89807.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58389504-4	chr13	58388990	58389990	+	826.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	3396.0	NR_029825	723902.0		NR_029825	ENSMUSG00000065434	Mir7-1	Mir7a1|Mirn7-1|miR-7a1|mir-7a-1|mmu-miR-7a1|mmu-mir-7-1	microRNA 7-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129876758-4	chr6	129876244	129877244	+	826.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133203)	promoter-TSS (NM_133203)	-72.0	NM_133203	170733.0	Mm.155514	NM_133203	ENSMUSG00000014543	Klra17	Ly49q|Ly49q1	killer cell lectin-like receptor, subfamily A, member 17	protein-coding	2.0	2.5	1.0	7.0	13.5	1.5
Merged-chr3-97297291-4	chr3	97296757	97297757	+	826.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69893.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17914618-4	chr16	17914207	17915207	+	826.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029469, intron 1 of 2)	CpG-5570	352.0	NM_029469	195333.0	Mm.463003	NM_029469	ENSMUSG00000022738	Gsc2	4930568H22Rik|GSC-2|Gscl	goosecoid homebox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90445745-2	chr2	90445245	90446245	+	826.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 20 of 23)	intron (NM_008982, intron 20 of 23)	33429.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121562773-2	chr11	121562290	121563290	+	826.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029878, intron 17 of 38)	intron (NM_029878, intron 17 of 38)	-43448.0	NM_178763	319530.0	Mm.11395	NM_178763	ENSMUSG00000039238	Zfp750	A030007D23Rik|Znf750	zinc finger protein 750	protein-coding	0.0	0.0	0.0	1.0	2.0	0.0
Merged-chr17-79954720-2	chr17	79954220	79955220	+	826.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58597.0	NM_001286647	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168117348-4	chr2	168116836	168117836	+	826.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	36332.0	NM_021409	58220.0	Mm.292834	NM_021409	ENSMUSG00000044641	Pard6b	AV025615|Par6b	par-6 family cell polarity regulator beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-16293434-3	chr5	16292920	16293920	+	826.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110843, intron 10 of 38)	intron (NM_001110843, intron 10 of 38)	-260075.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47772015-3	chr9	47771520	47772520	+	826.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	46188.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	10.5	11.0	9.0	9.5	7.5	12.5
Merged-chr15-59005265-3	chr15	59004782	59005782	+	826.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	71472.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83297576-3	chr8	83297073	83298073	+	826.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009463, intron 5 of 5)	intron (NM_009463, intron 5 of 5)	7225.0	NM_009463	22227.0	Mm.4177	NM_009463	ENSMUSG00000031710	Ucp1	AI385626|Slc25a7|Ucp	uncoupling protein 1 (mitochondrial, proton carrier)	protein-coding	21.0	8.5	5.0	5.5	2.5	2.0
Merged-chr5-30924156-3	chr5	30923632	30924632	+	826.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310524, intron 1 of 8)	intron (NM_001310524, intron 1 of 8)	2573.0	NM_001310524	16548.0	Mm.22451	NM_008439	ENSMUSG00000029162	Khk	-	ketohexokinase	protein-coding	1.5	3.5	0.5	12.0	3.5	2.5
Merged-chr15-76661167-4	chr15	76660550	76661550	+	826.320801	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276322)	promoter-TSS (NM_001276322)	469.0	NM_001358911	16581.0	Mm.378950	NM_010630	ENSMUSG00000004187	Kifc2	-	kinesin family member C2	protein-coding	3.5	4.0	1.0	0.0	5.5	1.0
Merged-chr17-71595230-4	chr17	71594731	71595731	+	826.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027953, intron 1 of 2)	intron (NR_027953, intron 1 of 2)	3050.0	NR_027953	68789.0	Mm.75202	NR_015549	ENSMUSG00000085492	Trmt61b	1110039F03Rik|623451|Gm6431	tRNA methyltransferase 61B	ncRNA	23.0	30.0	17.5	13.5	30.5	23.5
Merged-chr11-114995024-3	chr11	114994532	114995532	+	826.311096	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B1|LTR|ERVK	-5146.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	43.0	93.5	85.0	47.0	87.0	76.5
Merged-chr12-80810296-3	chr12	80809832	80810832	+	826.305542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	19800.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-24467114-4	chr18	24466659	24467659	+	826.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3712.0	NM_026529	68046.0	Mm.276574	NM_026529	ENSMUSG00000024273	2700062C07Rik	AI195775|C87515	RIKEN cDNA 2700062C07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43397615-4	chr7	43397139	43398139	+	826.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10641.0	NM_172900	243958.0	Mm.24444	NM_172900	ENSMUSG00000030468	Siglecg	9830164H23|A630096C01Rik|Siglec-G|Siglec10|mSiglec-G	sialic acid binding Ig-like lectin G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-84444442-3	chr14	84443956	84444956	+	826.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001013753, exon 1 of 4)	5' UTR (NM_001013753, exon 1 of 4)	893.0	NM_001013753	219228.0	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-131850402-2	chr4	131849902	131850902	+	826.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_025297, intron 1 of 9)	MIR|SINE|MIR	6931.0	NM_025297	26922.0	Mm.192706	NM_025297	ENSMUSG00000028910	Mecr	AI195831|NRBF-1|Nrbf1	mitochondrial trans-2-enoyl-CoA reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30597336-3	chr14	30596811	30597811	+	826.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 17 of 17)	intron (NM_011103, intron 17 of 17)	12999.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	4.0	26.5	16.5	8.5	23.0	11.5
Merged-chr1-34465669-4	chr1	34465178	34466178	+	826.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011206, intron 5 of 14)	intron (NM_011206, intron 5 of 14)	5932.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117808360-4	chr10	117807891	117808891	+	826.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15686.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0.0	0.0	1.5	0.0	0.0	1.0
Merged-chr10-117824424-4	chr10	117823914	117824914	+	826.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 2 of 7)	ID_B1|SINE|B4	21560.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45343762-3	chr7	45343263	45344263	+	826.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029741, exon 22 of 30)	exon (NM_029741, exon 22 of 30)	8494.0	NM_010473	15464.0	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141267986-3	chr4	141267500	141268500	+	826.233337	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10439.0	NR_151527	100503810.0		NR_151527	ENSMUSG00000085395	Gm13056	-	predicted gene 13056	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107826643-4	chr13	107826128	107827128	+	826.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	63436.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	53.0	76.5	48.0	47.0	65.5	49.5
Merged-chr17-15065795-4	chr17	15065301	15066301	+	826.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12742.0	NM_001034891	381062.0	Mm.393767	NM_183133	ENSMUSG00000036552	Ermard	2210404J11Rik|2410011O22Rik|AI448938	ER membrane associated RNA degradation	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-73772136-3	chr6	73771635	73772635	+	826.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-301114.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	4.0	3.0	2.5	12.0	6.5	14.0
Merged-chr2-167333694-3	chr2	167333227	167334227	+	826.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	15451.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-24559400-3	chr18	24558890	24559890	+	826.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29186.0	NM_001360807	225283.0	Mm.28427	NM_144861	ENSMUSG00000040446	Rprd1a	C77387|mKIAA4077	regulation of nuclear pre-mRNA domain containing 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85385045-3	chr12	85384543	85385543	+	826.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10326.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88537398-4	chr15	88536925	88537925	+	826.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62877.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-85709447-4	chr15	85708982	85709982	+	826.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2163.0	NR_029727	387245.0		NR_029727	ENSMUSG00000065564	Mirlet7b	Mirnlet7b|let-7b|mmu-let-7b	microRNA let7b	ncRNA	0.0	1.0	3.0	2.5	0.0	5.0
Merged-chr1-155093432-5	chr1	155093018	155094018	+	826.200012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6118.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-122902348-4	chr4	122901832	122902832	+	826.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12B|LTR|ERVK	-16256.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25784479-3	chr8	25783998	25784998	+	826.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026121, intron 1 of 4)	intron (NM_026121, intron 1 of 4)	711.0	NM_026121	67384.0	Mm.118400	NM_026121	ENSMUSG00000037316	Bag4	2410112I15Rik|SODD	BCL2-associated athanogene 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-37542505-3	chr17	37542012	37543012	+	826.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2D|LTR|ERVL	12555.0	NM_001005485	545205.0	Mm.383371	NM_001005485	ENSMUSG00000090675	Olfr111	-	olfactory receptor 111	protein-coding	2.0	0.0	0.5	0.0	0.0	0.5
Merged-chr4-16170452-3	chr4	16170034	16171034	+	826.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045765, intron 1 of 6)	RLTR16|LTR|ERVK	6424.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101113972-3	chr15	101113425	101114425	+	826.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1830.0	NM_144790	208258.0	Mm.152952	NM_144790	ENSMUSG00000047034	Ankrd33	A930021G21Rik|Panky|Panky-a	ankyrin repeat domain 33	protein-coding	62.0	178.5	90.5	69.0	169.0	130.5
Merged-chr6-121109753-2	chr6	121109280	121110280	+	826.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270475, intron 1 of 31)	CpG	21242.0	NM_001270475	194401.0	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	4.0	0.5	0.0	1.5	8.0	0.5
Merged-chr3-27899148-2	chr3	27898648	27899648	+	826.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2780.0	NM_001164437	208613.0	Mm.59189	NM_001164437	ENSMUSG00000043164	Tmem212	E030011K20Rik|Gm564	transmembrane protein 212	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45471156-4	chr7	45470698	45471698	+	826.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4300.0	NM_007527	12028.0	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-129301691-4	chr7	129301185	129302185	+	826.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080963, intron 1 of 6)	intron (NM_001080963, intron 1 of 6)	44591.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-71831993-3	chr9	71831508	71832508	+	826.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60406.0	NM_001304362	68178.0	Mm.99961	NM_026599	ENSMUSG00000032232	Cgnl1	4933421H10Rik|9930020M10Rik|AI503810|Jacop	cingulin-like 1	protein-coding	0.0	5.5	0.0	0.0	0.0	0.0
Merged-chr8-120529375-3	chr8	120528917	120529917	+	826.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	L1MB5|LINE|L1	-6440.0	NM_001145897	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27820199-2	chr17	27819699	27820699	+	826.099976	f1_balb.idr|f1_c57bl6.idr	exon (NM_001271511, exon 1 of 4)	exon (NM_001271511, exon 1 of 4)	343.0	NM_001033279	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	18.0	40.0	33.5	20.5	36.0	52.5
Merged-chr6-134792279-2	chr6	134791791	134792791	+	826.083374	f0_balb.idr|f0_c57.idr	promoter-TSS (NR_151454)	promoter-TSS (NR_151454)	-69.0	NR_151454	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	105.0	277.5	190.5	111.0	201.5	184.0
Merged-chr3-126598140-3	chr3	126597641	126598641	+	826.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 1 of 18)	intron (NM_001025438, intron 1 of 18)	1190.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	70.5	111.5	78.0	38.0	82.0	85.0
Merged-chr6-88113345-3	chr6	88112827	88113827	+	826.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9069.0	NR_105795	102465196.0		NR_105795	ENSMUSG00000099095	Mir6376	Gm27778|mmu-mir-6376	microRNA 6376	ncRNA	0.0	8.0	0.5	0.0	0.0	0.0
Merged-chr3-52729149-3	chr3	52728660	52729660	+	826.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10564.0	NR_038079	329639.0	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	2.5	15.5	5.5	1.5	0.0	1.0
Merged-chr2-150666024-3	chr2	150665540	150666540	+	826.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080575, intron 1 of 13)	intron (NM_080575, intron 1 of 13)	-1454.0	NR_040331	109344.0	Mm.440012	NR_040331	ENSMUSG00000087406	E130215H24Rik	-	RIKEN cDNA E130215H24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110706396-4	chr12	110705891	110706891	+	826.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-9996.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-130074066-4	chr7	130073559	130074559	+	826.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111894.0	NR_046077	100043150.0	Mm.334264	NR_046077	ENSMUSG00000108504	Gm4265	-	predicted gene 4265	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99468215-4	chr12	99467719	99468719	+	826.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18145.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138158057-4	chr5	138157565	138158565	+	826.016663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2321.0	NM_019747	56314.0	Mm.19274	NM_019747	ENSMUSG00000037007	Zfp113	4732456B05Rik|mKIAA4229	zinc finger protein 113	protein-coding	2.0	4.0	8.5	2.0	6.5	6.5
Merged-chr19-60788956-1	chr19	60788456	60789456	+	826.0	f1_balb.idr	intron (NM_010123, intron 1 of 21)	intron (NM_010123, intron 1 of 21)	1737.0	NM_010123	13669.0	Mm.2238	NM_010123	ENSMUSG00000024991	Eif3a	A830012B05Rik|Csma|Eif3|Eif3s10|mKIAA0139	eukaryotic translation initiation factor 3, subunit A	protein-coding	25.5	16.0	13.5	4.0	22.5	16.5
Merged-chr4-120935972-1	chr4	120935472	120936472	+	826.0	f0_balb.idr	intron (NM_001005788, intron 3 of 5)	intron (NM_001005788, intron 3 of 5)	-10967.0	NM_001160043	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	5.5	0.0	0.5	1.0	1.0	1.0
Merged-chr7-100685868-4	chr7	100685374	100686374	+	826.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20761.0	NM_001362169	319604.0	Mm.260362	NM_178764	ENSMUSG00000029461	Fam168a	2610030B18Rik|B930006L02Rik|mKIAA0280	family with sequence similarity 168, member A	protein-coding	0.0	4.5	2.0	0.0	0.0	2.0
Merged-chr13-30761998-2	chr13	30761498	30762498	+	826.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347508, intron 8 of 8)	intron (NM_001347508, intron 8 of 8)	12765.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110537820-3	chr11	110537306	110538306	+	826.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58466.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	42.5	56.0	31.0	21.5	37.5	36.5
Merged-chr2-160593290-2	chr2	160592790	160593790	+	826.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52607.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50191024-2	chr17	50190524	50191524	+	826.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181397)	promoter-TSS (NM_181397)	-527.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.0	0.0	0.0	0.0	2.5	0.0
Merged-chr1-39581564-2	chr1	39581064	39582064	+	826.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C2|LTR|ERVK	-4217.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121583846-2	chr8	121583346	121584346	+	826.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5040.0	NM_133765	76454.0	Mm.24829	NM_133765	ENSMUSG00000052934	Fbxo31	1110003O08Rik|2310046N15Rik|Fbx14|Fbxo14	F-box protein 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61029653-2	chr11	61029153	61030153	+	826.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001267593, intron 1 of 1)	intron (NM_001267593, intron 1 of 1)	7089.0	NM_001267593	16515.0	Mm.4970	NM_010603	ENSMUSG00000042529	Kcnj12	IRK-2|IRK2|Kir2.2|MB-IRK2	potassium inwardly-rectifying channel, subfamily J, member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108199495-2	chr3	108198995	108199995	+	826.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028061, exon 3 of 3)	exon (NM_028061, exon 3 of 3)	1339.0	NM_028061	72023.0	Mm.246391	NM_028061	ENSMUSG00000048796	Cyb561d1	1600010M23Rik|AI605489|AW457162	cytochrome b-561 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35063412-2	chr7	35062912	35063912	+	826.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-6846.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	2.5	5.0	8.5	10.0	0.0	3.5
Merged-chr14-7919199-2	chr14	7918699	7919699	+	826.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_134080, exon 29 of 46)	exon (NM_134080, exon 29 of 46)	74983.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-94295751-1	chr6	94295251	94296251	+	826.0	f1_c57bl6.idr	Intergenic	Intergenic	-11834.0	NM_001286785	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	1.5	1.0	0.5	0.0	0.0	0.0
Merged-chr7-122405250-2	chr7	122404750	122405750	+	826.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	116125.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-63871164-1	chr17	63870664	63871664	+	826.0	f0_balb.idr	intron (NM_001037997, intron 1 of 18)	B4A|SINE|B4	-6902.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95513048-1	chr9	95512548	95513548	+	826.0	f1_c57bl6.idr	Intergenic	Intergenic	-1052.0	NM_001357974	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	34.0	97.5	94.5	23.0	70.0	63.0
Merged-chr2-180657534-2	chr2	180657034	180658034	+	826.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175551)	TTS (NM_175551)	-14843.0	NM_001360335	277353.0	Mm.473700	NM_178254	ENSMUSG00000038932	Tcfl5	Figlb|Sosf1	transcription factor-like 5 (basic helix-loop-helix)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80780059-2	chr7	80779594	80780594	+	826.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	23237.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	163.5	360.0	228.0	104.0	317.5	203.0
Merged-chr14-87422490-2	chr14	87421986	87422986	+	826.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_001253755, intron 1 of 11)	intron (NM_001253755, intron 1 of 11)	5903.0	NM_001253755	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	26.5	27.0	19.5	17.0	16.5	13.5
Merged-chr11-114673610-2	chr11	114673110	114674110	+	826.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1858.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148485222-2	chr5	148484722	148485722	+	826.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66451.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25313025-1	chr14	25312525	25313525	+	826.0	f0_balb.idr	Intergenic	ID|SINE|ID	-146160.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172084993-1	chr1	172084493	172085493	+	826.0	f1_balb.idr	intron (NM_009938, intron 1 of 32)	intron (NM_009938, intron 1 of 32)	-2244.0	NM_021607	59287.0	Mm.218203	NM_021607	ENSMUSG00000003458	Ncstn	9430068N19Rik|AA727311|Aph2|D1Dau13e|Kiaa0253|Nct|mKIAA0253	nicastrin	protein-coding	7.0	5.0	5.0	7.0	20.5	4.0
Merged-chr10-96229316-2	chr10	96228816	96229816	+	826.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110448, intron 1 of 2)	intron (NR_110448, intron 1 of 2)	3109.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64374039-1	chr5	64373539	64374539	+	826.0	f1_c57bl6.idr	Intergenic	Intergenic	93903.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	1.5	3.0	3.0	1.5	6.0	0.0
Merged-chr11-34048192-1	chr11	34047692	34048692	+	826.0	f0_balb.idr	intron (NM_010696, intron 1 of 20)	intron (NM_010696, intron 1 of 20)	1264.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-63752224-2	chr7	63751724	63752724	+	826.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_130880, intron 11 of 13)	intron (NM_130880, intron 11 of 13)	-164633.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38519099-2	chr2	38518599	38519599	+	826.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159631, intron 1 of 9)	intron (NM_001159631, intron 1 of 9)	7223.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80466315-2	chr18	80465815	80466815	+	826.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 1 of 12)	intron (NM_026295, intron 1 of 12)	3352.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	4.0	1.5	1.5	3.5	0.0	0.0
Merged-chr2-158080053-2	chr2	158079553	158080553	+	826.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040609, intron 3 of 3)	intron (NR_040609, intron 3 of 3)	11744.0	NR_040609	72340.0	Mm.443395	NR_040609	ENSMUSG00000100860	2010009K17Rik	-	RIKEN cDNA 2010009K17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-37814439-3	chr16	37813942	37814942	+	826.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008047, intron 2 of 10)	intron (NM_008047, intron 2 of 10)	37387.0	NM_008047	14314.0	Mm.182434	NM_008047	ENSMUSG00000022816	Fstl1	AI316791|AW107808|Fstl|TSC-36	follistatin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-42423466-2	chr6	42422966	42423966	+	826.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11069.0	NM_207028	387353.0	Mm.377914	NM_207028	ENSMUSG00000048284	Tas2r126	T2R12|T2R26|Tas2r26|Tas2r41|mGR26|mt2r35	taste receptor, type 2, member 126	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134621936-2	chr4	134621436	134622436	+	826.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 2 of 11)	B4|SINE|B4	-54085.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62846636-2	chr11	62846136	62847136	+	826.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291441)	promoter-TSS (NM_001291441)	-487.0	NM_001033669	213980.0	Mm.482259	NM_001033669	ENSMUSG00000090173	Fbxw10	Fbw10|HREP|SM25H2|SM2SH2	F-box and WD-40 domain protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36557752-1	chr5	36557252	36558252	+	826.0	f0_balb.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	24645.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	24.5	25.0	9.5	26.0	32.0	33.0
Merged-chr10-111997818-2	chr10	111997318	111998318	+	826.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028608)	promoter-TSS (NM_028608)	-554.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71546957-1	chr8	71546457	71547457	+	826.0	f1_balb.idr	intron (NM_028617, intron 6 of 8)	intron (NM_028617, intron 6 of 8)	4027.0	NM_028617	73711.0	Mm.307770	NM_028617	ENSMUSG00000031813	Mvb12a	1110012M11Rik|Fam125a	multivesicular body subunit 12A	protein-coding	0.0	0.0	3.0	0.0	4.0	1.0
Merged-chr17-28553244-4	chr17	28552730	28553730	+	826.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001034871)	TTS (NM_001034871)	3743.0	NM_001034871	328788.0	Mm.99400	NM_001034871	ENSMUSG00000024224	Clpsl2	Gm749	colipase-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45560593-1	chr17	45560093	45561093	+	826.0	f1_balb.idr	exon (NM_001304956, exon 5 of 6)	exon (NM_001304956, exon 5 of 6)	-3343.0	NM_001357105	73836.0	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	0.0	0.0	0.5	2.5	3.5	0.0
Merged-chr14-18242882-2	chr14	18242382	18243382	+	826.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3776.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30003334-4	chr13	30002848	30003848	+	825.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17285.0	NM_010093	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129622095-4	chr2	129621598	129622598	+	825.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355158, intron 7 of 8)	intron (NM_001355158, intron 7 of 8)	26636.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	10.0	27.5	30.0	9.5	45.5	34.0
Merged-chr12-110957210-4	chr12	110956713	110957713	+	825.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175336, intron 18 of 20)	L1MB7|LINE|L1	21405.0	NM_001361917	74251.0	Mm.250989	NM_175207	ENSMUSG00000037904	Ankrd9	2500003O20Rik	ankyrin repeat domain 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-65342274-3	chr2	65341754	65342754	+	825.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177074, intron 7 of 11)	intron (NM_177074, intron 7 of 11)	21772.0	NM_177074	320106.0	Mm.227703	NM_177074	ENSMUSG00000061171	Slc38a11	9330158F14Rik	solute carrier family 38, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20745051-3	chr18	20744567	20745567	+	825.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	1337.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101381747-4	chr7	101381270	101382270	+	825.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040112, intron 1 of 30)	intron (NM_001040112, intron 1 of 30)	3648.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	41.0	160.5	78.5	68.5	133.5	97.5
Merged-chr2-45216713-3	chr2	45216199	45217199	+	825.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99257.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-127041412-4	chr4	127040901	127041901	+	825.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	19753.0	NM_026670	68310.0	Mm.273806	NM_026670	ENSMUSG00000043872	Zmym1	5830412B09Rik|AW209050	zinc finger, MYM domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55466909-2	chr11	55466409	55467409	+	825.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-2843.0	NM_013716	27041.0	Mm.39631	NM_013716	ENSMUSG00000018583	G3bp1	AI849976|B430204O07|C87777|G3bp|mKIAA4115	GTPase activating protein (SH3 domain) binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-38001701-2	chr7	38001203	38002203	+	825.916626	f0_balb.idr|f1_balb.idr	intron (NM_011274, intron 1 of 10)	intron (NM_011274, intron 1 of 10)	17849.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	2.0	5.0	2.0	3.5	18.0	12.5
Merged-chr19-32935769-3	chr19	32935300	32936300	+	825.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	178223.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	1.0	6.5	1.0	3.5	6.5	10.0
Merged-chr2-150826615-2	chr2	150826115	150827115	+	825.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_153781, intron 16 of 19)	intron (NM_153781, intron 16 of 19)	15955.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79545160-2	chr15	79544660	79545660	+	825.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040187, intron 1 of 12)	intron (NM_001040187, intron 1 of 12)	1399.0	NM_199079	67040.0	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95805812-3	chr11	95805322	95806322	+	825.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18678.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-24587011-3	chr1	24586415	24587415	+	825.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007733, intron 1 of 50)	CpG	522.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95893352-3	chr3	95892840	95893840	+	825.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146134)	promoter-TSS (NM_146134)	-581.0	NM_146104	226548.0	Mm.306954	NM_146104	ENSMUSG00000015750	Aph1a	6530402N02Rik|APH-1a	aph1 homolog A, gamma secretase subunit	protein-coding	7.0	12.5	16.0	2.5	9.0	17.5
Merged-chr17-70970356-4	chr17	70969869	70970869	+	825.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	20147.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0.5	20.5	13.5	0.0	22.0	16.0
Merged-chr9-95688285-3	chr9	95687778	95688778	+	825.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 6 of 8)	intron (NM_029620, intron 6 of 8)	50650.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41084674-4	chr13	41084185	41085185	+	825.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4979.0	NM_001145802	17152.0	Mm.8149	NM_008547	ENSMUSG00000021363	Mak	A930010O05Rik	male germ cell-associated kinase	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr17-27960587-3	chr17	27960055	27961055	+	825.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	51249.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	4.0	18.5	26.5	16.5	18.5	25.5
Merged-chr6-115762234-4	chr6	115761826	115762826	+	825.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001168257, exon 1 of 11)	5' UTR (NM_001168257, exon 1 of 11)	140.0	NM_001168257	94346.0	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146762488-4	chr6	146761964	146762964	+	825.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172734, intron 3 of 13)	MER102b|DNA|hAT-Charlie	37534.0	NM_172734	232533.0	Mm.322121	NM_172734	ENSMUSG00000001630	Stk38l	4930473A22Rik|Ndr2|Ndr54	serine/threonine kinase 38 like	protein-coding	6.5	1.5	0.0	12.0	1.5	0.0
Merged-chr3-90632156-2	chr3	90631656	90632656	+	825.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19262.0	NM_011313	20200.0	Mm.100144	NM_011313	ENSMUSG00000001025	S100a6	2A9|5B10|CALCYCLIN|Cacy|PRA	S100 calcium binding protein A6 (calcyclin)	protein-coding	8.5	5.0	4.0	0.0	3.0	5.0
Merged-chr8-10835827-4	chr8	10835348	10836348	+	825.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46606.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37749263-4	chr13	37748774	37749774	+	825.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76764.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	10.5	6.0	3.0	2.0	0.5
Merged-chr6-16977534-3	chr6	16977030	16978030	+	825.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79089.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-35993196-3	chr1	35992723	35993723	+	825.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75177.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135545216-3	chr4	135544751	135545751	+	825.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013756, intron 15 of 15)	intron (NM_001013756, intron 15 of 15)	28369.0	NM_001013756	230824.0	Mm.331972	NM_001013756	ENSMUSG00000037188	Grhl3	AI561912|Get1|Som|Tfcp2l4|ct	grainyhead like transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93688435-2	chr1	93687935	93688935	+	825.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_016778, intron 2 of 4)	intron (NM_016778, intron 2 of 4)	2860.0	NM_016778	51800.0	Mm.3295	NM_016778	ENSMUSG00000026278	Bok	matador|mtd	BCL2-related ovarian killer	protein-coding	3.0	0.0	0.0	0.5	0.0	0.0
Merged-chr3-27985614-2	chr3	27985114	27986114	+	825.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 1 of 25)	intron (NM_008875, intron 1 of 25)	1443.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7596880-2	chr9	7596380	7597380	+	825.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25484.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135699750-2	chr3	135699282	135700282	+	825.75	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-8235.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-18716569-4	chr19	18716075	18717075	+	825.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177640, intron 1 of 1)	B3|SINE|B2	3339.0	NM_177640	225995.0	Mm.28101	NM_177640	ENSMUSG00000047044	D030056L22Rik	-	RIKEN cDNA D030056L22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59236587-4	chr4	59236091	59237091	+	825.679199	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23460.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr13-37749776-3	chr13	37749300	37750300	+	825.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76238.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	11.5	4.0	1.0	1.0	9.0	5.0
Merged-chr9-120133630-4	chr9	120133102	120134102	+	825.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3168.0	NR_002902	104433.0	Mm.453530	NR_002902	ENSMUSG00000064925	Snora62	E2|MBI-13|MBI-136|Rnu108	small nucleolar RNA, H/ACA box 62	snoRNA	0.0	1.5	0.5	0.5	0.5	2.0
Merged-chr11-44546868-2	chr11	44546368	44547368	+	825.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 4 of 5)	intron (NM_001166553, intron 4 of 5)	27491.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	12.0	39.5	19.5	12.5	28.5	28.0
Merged-chr17-87181813-4	chr17	87181241	87182241	+	825.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5C1|DNA|hAT-Charlie	13201.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	0.0	13.0	13.5	6.0	8.0	16.5
Merged-chr11-99574216-2	chr11	99573716	99574716	+	825.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR50|LTR|ERVL	6800.0	NM_027157	69664.0	Mm.38303	NM_027157	ENSMUSG00000047253	Krtap1-5	2310043L02Rik|AI592983	keratin associated protein 1-5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-105262182-2	chr11	105261682	105262682	+	825.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361996, intron 14 of 19)	intron (NM_001361996, intron 14 of 19)	-30464.0	NM_008626	17534.0	Mm.235616	NM_008626	ENSMUSG00000020695	Mrc2	Endo180|mKIAA0709|uPARAP	mannose receptor, C type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160336589-3	chr2	160336123	160337123	+	825.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9129.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-37355681-3	chr6	37355227	37356227	+	825.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178661, exon 6 of 12)	exon (NM_178661, exon 6 of 12)	-55751.0	NM_001347104	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125630523-3	chr7	125630020	125631020	+	825.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021887, intron 7 of 8)	intron (NM_021887, intron 7 of 8)	27091.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	0.5	1.5	1.5	0.5	0.0	0.5
Merged-chr10-34215848-3	chr10	34215331	34216331	+	825.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8280.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88327643-4	chr10	88327147	88328147	+	825.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 5 of 6)	intron (NM_027878, intron 5 of 6)	29428.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3791233-3	chr12	3790762	3791762	+	825.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15718.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80158954-2	chr12	80158454	80159454	+	825.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26110.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-33122853-4	chr19	33122377	33123377	+	825.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34235.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70505074-4	chr8	70504568	70505568	+	825.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_018827)	TTS (NM_018827)	1358.0	NR_151646	66462.0	Mm.28242	NM_025577	ENSMUSG00000058833	Rex1bd	2810428I15Rik	required for excision 1-B domain containing	protein-coding	7.0	2.0	0.0	2.0	10.5	0.0
Merged-chr8-128652685-4	chr8	128652163	128653163	+	825.625	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-32991.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106365513-4	chr9	106365027	106366027	+	825.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-3105.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	1.0	12.5	17.5	1.0	11.0	24.0
Merged-chr15-62038992-5	chr15	62038439	62039439	+	825.617798	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132746)	promoter-TSS (NR_132746)	-318.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-6152413-3	chr7	6151903	6152903	+	825.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013012, intron 1 of 2)	intron (NM_001013012, intron 1 of 2)	3568.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-93318970-3	chr15	93318467	93319467	+	825.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028315, intron 2 of 4)	intron (NR_028315, intron 2 of 4)	17968.0	NR_028315	67057.0	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31680590-4	chr17	31680113	31681113	+	825.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001278570, intron 2 of 2)	intron (NM_001278570, intron 2 of 2)	2682.0	NM_001278570	12954.0	Mm.1228	NM_013501	ENSMUSG00000024041	Cryaa	Acry-1|Crya-1|Crya1|DAcry-1|lop18	crystallin, alpha A	protein-coding	16.0	1.0	3.0	4.0	0.5	3.0
Merged-chr2-131166026-4	chr2	131165516	131166516	+	825.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B4|LTR|ERVL	-5935.0	NM_026091	67326.0	Mm.27711	NM_026091	ENSMUSG00000027327	1700037H04Rik	-	RIKEN cDNA 1700037H04 gene	protein-coding	35.5	54.0	56.5	8.0	43.0	9.5
Merged-chr8-64896966-4	chr8	64896466	64897466	+	825.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-47042.0	NM_178633	77113.0	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|8530402H02Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88137670-3	chr3	88137097	88138097	+	825.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4775.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-72364733-3	chr12	72364222	72365222	+	825.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153457, intron 1 of 8)	MTD|LTR|ERVL-MaLR	44332.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-5334507-3	chr9	5333984	5334984	+	825.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007609, intron 7 of 8)	ORR1A4-int|LTR|ERVL-MaLR	-10992.0	NM_009808	12364.0	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21611229-3	chr5	21610735	21611735	+	825.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199632, intron 7 of 20)	L1M2|LINE|L1	34370.0	NM_001199632	320118.0	Mm.442295	NM_177076	ENSMUSG00000048520	Fbxl13	4921539K22Rik	F-box and leucine-rich repeat protein 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20656762-2	chr11	20656271	20657271	+	825.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24794.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0.0	0.0	0.0	2.0	0.0	0.0
Merged-chr5-120611951-2	chr5	120611451	120612451	+	825.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029096, intron 1 of 2)	ID_B1|SINE|B4	638.0	NM_029096	100764.0	Mm.9654	NM_029096	ENSMUSG00000029600	Rita1	1110008J03Rik|AI853657|C86297|Rita	RBPJ interacting and tubulin associated 1	protein-coding	3.0	10.5	18.5	3.0	11.5	13.5
Merged-chr4-19856282-1	chr4	19855782	19856782	+	825.5	f0_balb.idr	Intergenic	Intergenic	37555.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-93552998-2	chr13	93552498	93553498	+	825.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53190.0	NM_021310	57748.0	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64335263-2	chr5	64334818	64335818	+	825.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001310611, exon 19 of 22)	exon (NM_001310611, exon 19 of 22)	104961.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	24.0	89.5	33.5	33.0	29.5	33.0
Merged-chr11-95826541-2	chr11	95826041	95827041	+	825.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153104, intron 1 of 2)	ID_B1|SINE|B4	2041.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142922697-2	chr5	142922197	142923197	+	825.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-15943.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85365900-2	chr12	85365400	85366400	+	825.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 1 of 4)	intron (NM_026775, intron 1 of 4)	8817.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43629638-2	chr17	43629138	43630138	+	825.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001161367, exon 1 of 5)	exon (NM_001161367, exon 1 of 5)	661.0	NM_001161366	210510.0	Mm.329058	NM_198418	ENSMUSG00000040140	Tdrd6	AB097085|Tdr2	tudor domain containing 6	protein-coding	0.0	0.0	0.0	0.0	2.0	6.0
Merged-chr5-69555697-2	chr5	69555197	69556197	+	825.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-1227.0	NM_172711	231279.0	Mm.21105	NM_172711	ENSMUSG00000029208	Guf1	4631409J12|AA407526|EF-4	GUF1 homolog, GTPase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76378708-2	chr12	76378208	76379208	+	825.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178744, intron 1 of 1)	ID_B1|SINE|B4	8442.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78566939-2	chr11	78566439	78567439	+	825.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008702)	TTS (NM_008702)	-16204.0	NM_133706	69071.0	Mm.29431	NM_133706	ENSMUSG00000037278	Tmem97	1810014L12Rik|AI115531|AL022956|D11Bhm182e	transmembrane protein 97	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120553719-2	chr8	120553219	120554219	+	825.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_198671, exon 2 of 16)	exon (NM_198671, exon 2 of 16)	15023.0	NR_106159	102466849.0		NR_106159	ENSMUSG00000098280	Mir7687	Gm27573|mmu-mir-7687	microRNA 7687	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75668598-2	chr7	75668098	75669098	+	825.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 10 of 36)	intron (NM_029332, intron 10 of 36)	-179740.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128345118-4	chr7	128344605	128345605	+	825.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46974.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13439367-2	chr10	13438867	13439867	+	825.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	L1MC5|LINE|L1	35029.0	NM_001195065	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45712022-2	chr7	45711522	45712522	+	825.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020011, intron 5 of 5)	intron (NM_020011, intron 5 of 5)	3185.0	NM_020011	56632.0	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166481750-2	chr2	166481250	166482250	+	825.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34299.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98995324-2	chr7	98994824	98995824	+	825.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 8 of 14)	HAL1ME|LINE|L1	145820.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4845211-2	chr7	4844711	4845711	+	825.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172737)	promoter-TSS (NM_172737)	-515.0	NM_172737	232813.0	Mm.44666	NM_172737	ENSMUSG00000053550	Shisa7	ckamp59	shisa family member 7	protein-coding	0.0	1.5	1.0	2.5	0.0	0.0
Merged-chr14-70391870-2	chr14	70391370	70392370	+	825.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021308, intron 17 of 22)	ID_B1|SINE|B4	37224.0	NM_021308	57746.0	Mm.85253	NM_021308	ENSMUSG00000033644	Piwil2	Piwil1l|mili	piwi-like RNA-mediated gene silencing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33742707-2	chr16	33742207	33743207	+	825.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 10 of 14)	intron (NM_175256, intron 10 of 14)	-51330.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24982080-2	chr2	24981580	24982580	+	825.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_146251, exon 6 of 35)	exon (NM_146251, exon 6 of 35)	6047.0	NM_146251	241274.0	Mm.389243	NM_146251	ENSMUSG00000036833	Pnpla7	BC027342|E430013P11Rik|Nre	patatin-like phospholipase domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56474990-4	chr19	56474475	56475475	+	825.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172641, intron 7 of 12)	intron (NM_172641, intron 7 of 12)	13338.0	NM_172641	226245.0	Mm.156742	NM_172641	ENSMUSG00000035818	Plekhs1	9930023K05Rik	pleckstrin homology domain containing, family S member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-79713786-2	chr17	79713286	79714286	+	825.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009994, exon 2 of 3)	exon (NM_009994, exon 2 of 3)	1255.0	NM_009994	13078.0	Mm.214016	NM_009994	ENSMUSG00000024087	Cyp1b1	CP1B|P4501b1	cytochrome P450, family 1, subfamily b, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-140794126-2	chr1	140793626	140794626	+	825.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-137724.0	NR_040604	75910.0	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35653775-2	chr18	35653275	35654275	+	825.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001270646, exon 1 of 1)	exon (NM_001270646, exon 1 of 1)	1424.0	NM_001270646	381148.0	Mm.297784	NM_001270646	ENSMUSG00000073600	Prob1	Gm1614	proline rich basic protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114697635-2	chr5	114697135	114698135	+	825.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-6700.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	0.0	4.0	1.0	17.0	65.0	31.0
Merged-chr10-77257236-2	chr10	77256736	77257736	+	825.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_026944)	TTS (NR_026944)	1987.0	NR_026944	100169878.0	Mm.420901	NR_026944	ENSMUSG00000078444	Gm10941	-	predicted gene 10941	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90334303-3	chr16	90333806	90334806	+	825.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49803.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113692852-5	chr6	113692317	113693317	+	825.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 11 of 11)	RMER17C-int|LTR|ERVK	-4233.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-79580439-4	chr17	79579940	79580940	+	825.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34460.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-87391528-3	chr12	87391023	87392023	+	825.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3168.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59878230-3	chr4	59877739	59878739	+	825.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 3 of 8)	intron (NM_172468, intron 3 of 8)	36817.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	3.5	6.5	9.5	3.0	7.0	8.5
Merged-chr2-119993355-3	chr2	119992848	119993848	+	825.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355293, intron 1 of 30)	MTD|LTR|ERVL-MaLR	20649.0	NM_011941	26390.0	Mm.330501	NM_011941	ENSMUSG00000033902	Mapkbp1	2810483F24Rik|AW123212|JNKBP-1|Jnkbp1|mKIAA0596	mitogen-activated protein kinase binding protein 1	protein-coding	13.5	23.0	37.0	25.5	64.0	45.0
Merged-chr1-192088129-4	chr1	192087579	192088579	+	825.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011633, intron 1 of 9)	intron (NM_011633, intron 1 of 9)	4520.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33887692-4	chr2	33887184	33888184	+	825.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175184, exon 1 of 10)	5' UTR (NM_175184, exon 1 of 10)	262.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52179997-3	chr3	52179522	52180522	+	825.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75016.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103013330-4	chr14	103012832	103013832	+	825.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 2 of 2)	intron (NR_045657, intron 2 of 2)	20471.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166090563-2	chr2	166090054	166091054	+	825.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252579, intron 5 of 20)	intron (NM_001252579, intron 5 of 20)	64731.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.0	1.0	1.0	0.0	3.0	5.0
Merged-chr4-107213598-3	chr4	107213094	107214094	+	825.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081272, intron 2 of 4)	intron (NM_001081272, intron 2 of 4)	4414.0	NM_001081272	546840.0	Mm.331755	NM_001081272	ENSMUSG00000070877	Ldlrad1	-	low density lipoprotein receptor class A domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88099716-4	chr8	88099269	88100269	+	825.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151771, intron 2 of 7)	intron (NR_151771, intron 2 of 7)	18838.0	NR_151771	100040328.0	Mm.56398	NR_151771		Gm2716	4933416k23	predicted gene 2716	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128186107-4	chr10	128185619	128186619	+	825.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5822.0	NM_001039080	56516.0	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	2.0	5.0	1.0	0.0	0.0	0.0
Merged-chr4-132039043-4	chr4	132038525	132039525	+	825.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	LTR104_Mam|LTR|Gypsy	10053.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75744223-4	chr10	75743708	75744708	+	825.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172549, intron 10 of 36)	intron (NM_172549, intron 10 of 36)	20149.0	NM_172549	104248.0	Mm.257404	NM_172549	ENSMUSG00000020196	Cabin1	A330070M20Rik|Cain|Ppp3in	calcineurin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-5807723-3	chr10	5807217	5808217	+	825.355591	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2252.0	NM_025995	67141.0	Mm.197520	NM_025995	ENSMUSG00000019773	Fbxo5	2510044I10Rik|C85305|Emi1|Fbxo31	F-box protein 5	protein-coding	8.0	11.5	13.5	8.5	23.5	15.0
Merged-chr3-90212872-2	chr3	90212372	90213372	+	825.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293741)	promoter-TSS (NM_001293741)	775.0	NM_001190258	100043813.0	Mm.270283	NM_001190258	ENSMUSG00000050621	Rps27rt	Gm9846|Rps27l2	ribosomal protein S27, retrogene	protein-coding	2.0	3.5	0.5	2.0	4.0	1.5
Merged-chr8-126944961-3	chr8	126944528	126945528	+	825.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024214, intron 1 of 4)	intron (NM_024214, intron 1 of 4)	893.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-29561035-3	chr16	29560549	29561549	+	825.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16185.0	NM_001164613	224079.0	Mm.54954	NM_172613	ENSMUSG00000038094	Atp13a4	4631413J11Rik|4832416L12|9330174J19Rik	ATPase type 13A4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36865755-3	chr17	36865263	36866263	+	825.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177872, intron 2 of 6)	MTD|LTR|ERVL-MaLR	1424.0	NM_001024134	69097.0	Mm.307027	NM_001024134	ENSMUSG00000050747	Trim15	1810012B10Rik	tripartite motif-containing 15	protein-coding	1.0	2.5	3.5	7.0	10.5	18.0
Merged-chr6-4797009-3	chr6	4796526	4797526	+	825.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49720.0	NM_130877	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	0.5	21.5	6.0	0.5	21.5	6.5
Merged-chr12-85146566-3	chr12	85146081	85147081	+	825.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146244, intron 4 of 10)	intron (NM_146244, intron 4 of 10)	4683.0	NM_146244	238323.0	Mm.44829	NM_146244	ENSMUSG00000019235	Rps6kl1	A830084F09Rik|AW046440	ribosomal protein S6 kinase-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135654571-4	chr7	135654002	135655002	+	825.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316681, intron 3 of 17)	intron (NM_001316681, intron 3 of 17)	-2188.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-56486678-4	chr14	56486180	56487180	+	825.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033043, intron 24 of 36)	intron (NM_001033043, intron 24 of 36)	83983.0	NM_001033043	30054.0	Mm.287783	NM_001033043	ENSMUSG00000000365	Rnf17	MMIP-2|Mmip2|TDRD4	ring finger protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46078645-3	chr8	46078131	46079131	+	825.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207213, intron 5 of 17)	intron (NM_207213, intron 5 of 17)	45515.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97508713-3	chr6	97508225	97509225	+	825.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-20905.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	10.5	12.5	16.0	10.5	12.5	16.0
Merged-chr17-56951069-3	chr17	56950547	56951547	+	825.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15659.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97313393-3	chr7	97312926	97313926	+	825.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177412, intron 7 of 9)	intron (NM_001177412, intron 7 of 9)	12538.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70205949-4	chr14	70205449	70206449	+	825.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271407)	promoter-TSS (NM_001271407)	73.0	NM_001271407	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102189665-1	chr2	102189165	102190165	+	825.333313	f0_balb.idr	Intergenic	Intergenic	-3205.0	NM_001290784	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123884048-3	chr5	123883598	123884598	+	825.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4078.0	NM_175520	243270.0	Mm.33362	NM_175520	ENSMUSG00000049241	Hcar1	Gpr81	hydrocarboxylic acid receptor 1	protein-coding	0.0	0.0	1.5	0.0	0.0	1.5
Merged-chr15-101119573-3	chr15	101119076	101120076	+	825.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144790, exon 4 of 4)	exon (NM_144790, exon 4 of 4)	3821.0	NM_001355656	208258.0	Mm.152952	NM_144790	ENSMUSG00000047034	Ankrd33	A930021G21Rik|Panky|Panky-a	ankyrin repeat domain 33	protein-coding	4.5	14.5	4.5	0.0	0.0	0.0
Merged-chr16-38714184-3	chr16	38713696	38714696	+	825.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER102b|DNA|hAT-Charlie	-1161.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30181513-4	chr7	30181007	30182007	+	825.30835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2664.0	NM_009944	12865.0	Mm.423030	NM_009944	ENSMUSG00000074218	Cox7a1	COX7A|COX7AH|COX7AM	cytochrome c oxidase subunit VIIa 1	protein-coding	5.5	0.0	4.0	4.0	2.5	6.0
Merged-chr7-118283383-3	chr7	118282884	118283884	+	825.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	39477.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12393763-2	chr13	12393263	12394263	+	825.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-1612.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67448379-2	chr18	67447879	67448879	+	825.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_027130, intron 1 of 16)	intron (NM_027130, intron 1 of 16)	757.0	NM_027130	69597.0	Mm.426052	NM_027130	ENSMUSG00000024527	Afg3l2	2310036I02Rik|AW260507|Emv66|par	AFG3-like AAA ATPase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23306573-2	chr16	23306073	23307073	+	825.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252506, intron 1 of 6)	intron (NM_001252506, intron 1 of 6)	16103.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117236551-2	chr8	117236051	117237051	+	825.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-20468.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27987916-3	chr15	27987426	27988426	+	825.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	37922.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-146485614-2	chr4	146485114	146486114	+	825.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16386.0	NM_001243138	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-103525844-4	chr6	103525346	103526346	+	825.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007697, intron 1 of 26)	intron (NM_007697, intron 1 of 26)	14970.0	NM_007697	12661.0	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96171767-3	chr10	96171274	96172274	+	825.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-54433.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-44292769-3	chr4	44292276	44293276	+	825.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8141.0	NM_010790	17279.0	Mm.268668	NM_010790	ENSMUSG00000035683	Melk	AI327312|MPK38|mKIAA0175	maternal embryonic leucine zipper kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-5012856-2	chr7	5012356	5013356	+	825.214233	f1_balb.idr|f1_c57bl6.idr	exon (NM_011813, exon 2 of 3)	exon (NM_011813, exon 2 of 3)	386.0	NM_001110330	23877.0	Mm.38911	NM_011813	ENSMUSG00000061374	Fiz1	AI790204|mFLJ00416	Flt3 interacting zinc finger protein 1	protein-coding	2.0	0.0	0.0	0.5	0.0	0.0
Merged-chr9-50444012-4	chr9	50443515	50444515	+	825.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-50510.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85086612-1	chr1	85086112	85087112	+	825.200012	f1_balb.idr	Intergenic	Intergenic	23241.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-3240420-7	chr16	3239922	3240922	+	825.1904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-351976.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26640441-4	chr17	26639960	26640960	+	825.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 8 of 9)	intron (NM_026170, intron 8 of 9)	-35936.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120101184-4	chr11	120100640	120101640	+	825.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001110242)	TTS (NM_001110242)	2206.0	NM_001110242	208501.0	Mm.46699	NM_001110242	ENSMUSG00000078572	Ndufaf8	1810043H04Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 8	protein-coding	0.0	1.5	0.0	0.0	1.5	8.0
Merged-chr11-77335239-3	chr11	77334738	77335738	+	825.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 2 of 14)	MTD|LTR|ERVL-MaLR	-13042.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58953988-3	chr11	58953448	58954448	+	825.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178218)	promoter-TSS (NM_178218)	564.0	NR_134309	382522.0	Mm.377898	NR_134309	ENSMUSG00000080712	Hist3h2bb-ps	4930534G10Rik|4933432H21|B2Hist3h2bb|Hist3h2bb|R75370	histone cluster 3, H2bb, pseudogene	pseudo	68.5	180.5	121.0	36.0	70.5	29.0
Merged-chr7-24965383-4	chr7	24964858	24965858	+	825.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4717.0	NR_106013	102465633.0		NR_106013	ENSMUSG00000098802	Mir7046	Gm27469|mmu-mir-7046	microRNA 7046	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-33877525-2	chr1	33877025	33878025	+	825.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 3 of 6)	ORR1A3|LTR|ERVL-MaLR	30096.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44219266-4	chr10	44218761	44219761	+	825.145813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_001582, exon 7 of 7)	non-coding (NR_001582, exon 7 of 7)	3836.0	NR_027506	70365.0	Mm.87073	NR_001582	ENSMUSG00000091358	Speer5-ps1	1700007C10Rik|SPEER-5|Speer5-ps	spermatogenesis associated glutamate (E)-rich protein 5, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79475328-3	chr8	79474834	79475834	+	825.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-75866.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120102949-4	chr5	120102449	120103449	+	825.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13564.0	NM_028762	74111.0	Mm.41022	NM_028762	ENSMUSG00000029594	Rbm19	1200009A02Rik|AV302714|NPO	RNA binding motif protein 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105701575-4	chr5	105701052	105702052	+	825.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	742.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	31.0	123.0	38.5	39.0	124.0	67.5
Merged-chr5-105559331-4	chr5	105558845	105559845	+	825.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	L1MA5|LINE|L1	39874.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80222425-2	chr17	80221925	80222925	+	825.116699	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2026.0	NM_026053	67242.0	Mm.279985	NM_026053	ENSMUSG00000055760	Gemin6	2610019B15Rik|2810470M17Rik	gem nuclear organelle associated protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122940512-4	chr7	122940015	122941015	+	825.104187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29944.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94284585-2	chr13	94284085	94285085	+	825.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346609, intron 1 of 8)	intron (NM_001346609, intron 1 of 8)	696.0	NM_029153	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-116636156-4	chr8	116635639	116636639	+	825.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 1 of 6)	L1MC3|LINE|L1	96852.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46126641-4	chr4	46126122	46127122	+	825.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355375, intron 4 of 9)	intron (NM_001355375, intron 4 of 9)	11853.0	NM_173033	272027.0	Mm.249594	NM_173033	ENSMUSG00000035495	Tstd2	3010020C06	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr9-109932650-7	chr9	109932127	109933127	+	825.080933	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205332, intron 1 of 17)	intron (NM_001205332, intron 1 of 17)	853.0	NM_008633	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9752430-3	chr3	9751911	9752911	+	825.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	81268.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	5.0	0.0	2.5	0.0	0.5	1.5
Merged-chr6-100150963-3	chr6	100150470	100151470	+	825.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136388.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62439859-3	chr4	62439358	62440358	+	825.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5132.0	NM_153504	76072.0	Mm.169565	NM_153504	ENSMUSG00000063851	Rnf183	5830442J12Rik	ring finger protein 183	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83028739-4	chr6	83028236	83029236	+	825.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 9 of 9)	intron (NM_033079, intron 9 of 9)	4735.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	7.0	10.0	16.0	4.0	25.5	8.0
Merged-chr17-5809360-2	chr17	5808860	5809860	+	825.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9870.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125756133-2	chr8	125755633	125756633	+	825.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175561, intron 32 of 33)	intron (NM_175561, intron 32 of 33)	21930.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-118627984-2	chr1	118627484	118628484	+	825.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023755)	promoter-TSS (NM_023755)	39.0	NM_023755	81879.0	Mm.24621	NM_023755	ENSMUSG00000026380	Tfcp2l1	1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1	transcription factor CP2-like 1	protein-coding	0.0	0.0	0.0	0.0	5.5	0.0
Merged-chr3-88492633-1	chr3	88492133	88493133	+	825.0	f0_balb.idr	intron (NM_001002011, intron 1 of 11)	intron (NM_001002011, intron 1 of 11)	679.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102239412-3	chr15	102238900	102239900	+	825.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011244, exon 8 of 10)	exon (NM_011244, exon 8 of 10)	7100.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66074658-2	chr5	66074158	66075158	+	825.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	B3|SINE|B2	23521.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62678416-2	chr4	62677916	62678916	+	825.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310706, intron 1 of 6)	intron (NM_001310706, intron 1 of 6)	4442.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-39772803-2	chr15	39772303	39773303	+	825.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022722, intron 9 of 9)	RMER13B|LTR|ERVK	-24242.0	NR_045788	100503072.0	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	-	predicted gene 16291	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-33190937-4	chr14	33190464	33191464	+	825.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5898.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147753236-2	chr5	147752736	147753736	+	825.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27248.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	2.5	0.0	0.5	0.0	0.0	0.0
Merged-chr8-34816793-1	chr8	34816293	34817293	+	825.0	f1_c57bl6.idr	intron (NM_176933, intron 2 of 3)	intron (NM_176933, intron 2 of 3)	9183.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	2.5	0.0	2.0	0.0	2.5	0.5
Merged-chr15-61935704-1	chr15	61935204	61936204	+	825.0	f0_balb.idr	Intergenic	Lx8|LINE|L1	-49637.0	NM_001177354	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-70474747-2	chr18	70474181	70475181	+	825.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289650, intron 3 of 8)	MIRc|SINE|MIR	2015.0	NM_001289650	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	5.0	8.0	6.5	9.5	9.0	12.0
Merged-chr2-22750348-2	chr2	22749848	22750848	+	825.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23979.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-119359571-1	chr12	119359071	119360071	+	825.0	f0_balb.idr	Intergenic	Intergenic	-83839.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-67015463-2	chr13	67014971	67015971	+	825.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045851, intron 1 of 8)	L1Md_T|LINE|L1	16934.0	NR_045851	71226.0	Mm.399574	NR_045851	ENSMUSG00000114362	4933433G19Rik	-	RIKEN cDNA 4933433G19 gene	ncRNA	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr11-69395442-2	chr11	69394944	69395944	+	825.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_030083)	promoter-TSS (NM_030083)	-98.0	NM_001045525	327951.0	Mm.415669	NM_001045525	ENSMUSG00000044795	Cyb5d1	Gm740	cytochrome b5 domain containing 1	protein-coding	38.0	56.0	40.5	32.0	92.0	55.5
Merged-chr7-143605534-4	chr7	143605035	143606035	+	825.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5445.0	NM_013742	27267.0	Mm.125659	NM_013742	ENSMUSG00000010755	Cars	CA3	cysteinyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-64590080-1	chr18	64589580	64590580	+	825.0	f1_c57bl6.idr	intron (NM_001001488, intron 2 of 27)	intron (NM_001001488, intron 2 of 27)	70920.0	NM_001001488	54670.0	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	3.0
Merged-chr5-141094421-4	chr5	141093911	141094911	+	825.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93815.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-47255824-4	chr4	47255331	47256331	+	825.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 6 of 39)	intron (NM_009928, intron 6 of 39)	47819.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74995084-4	chr11	74994601	74995601	+	825.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 10 of 18)	intron (NM_001002764, intron 10 of 18)	69229.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64077167-3	chr7	64076686	64077686	+	825.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76649.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0.0	0.0	1.5	1.0	0.0	0.0
Merged-chr14-71276417-2	chr14	71275917	71276917	+	825.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25144.0	NR_046076	100043132.0	Mm.399336	NR_046075	ENSMUSG00000115139	Gm4251	-	predicted gene 4251	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136803280-2	chr6	136802764	136803764	+	825.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175652)	TTS (NM_175652)	1167.0	NM_175652	320332.0	Mm.246720	NM_175652	ENSMUSG00000096010	Hist4h4	B130044J01Rik	histone cluster 4, H4	protein-coding	7.5	34.5	23.5	13.0	35.0	17.5
Merged-chr4-52917035-1	chr4	52916535	52917535	+	825.0	f1_balb.idr	Intergenic	Intergenic	-5243.0	NM_146839	258836.0	Mm.331617	NM_146839	ENSMUSG00000051593	Olfr272	MOR262-7	olfactory receptor 272	protein-coding	20.5	6.0	15.5	4.0	12.0	4.5
Merged-chr9-36768248-1	chr9	36767748	36768748	+	825.0	f0_c57.idr	promoter-TSS (NM_008408)	promoter-TSS (NM_008408)	-670.0	NM_008408	16430.0	Mm.2863	NM_008408	ENSMUSG00000032116	Stt3a	AA408947|BB081708|Itm1	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	protein-coding	171.5	423.5	365.5	134.0	314.5	323.0
Merged-chr13-103780496-2	chr13	103779996	103780996	+	825.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	-5888.0	NM_001361085	218543.0	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding	0.0	0.0	0.0	1.5	3.0	0.5
Merged-chr1-120072691-1	chr1	120072191	120073191	+	825.0	f1_balb.idr	intron (NM_019432, intron 1 of 1)	MIRc|SINE|MIR	1089.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	14.0	42.5	31.0	10.5	48.5	10.5
Merged-chr12-32344088-2	chr12	32343588	32344588	+	825.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-34701.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30985433-4	chr2	30984939	30985939	+	825.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028846, intron 1 of 24)	intron (NM_028846, intron 1 of 24)	3160.0	NM_028846	74270.0	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73704375-2	chr15	73703875	73704875	+	825.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173365, intron 1 of 1)	intron (NM_173365, intron 1 of 1)	3130.0	NM_173365	239530.0	Mm.122997	NM_173365	ENSMUSG00000045281	Gpr20	A430106B11Rik	G protein-coupled receptor 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117363600-1	chr5	117363100	117364100	+	825.0	f1_balb.idr	exon (NM_021539, exon 2 of 9)	exon (NM_021539, exon 2 of 9)	6295.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	27.0	16.0	31.5	33.0	47.5	40.0
Merged-chr17-15652063-4	chr17	15651570	15652570	+	825.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20282.0	NR_045431	71008.0	Mm.399492	NR_045431		4933401D09Rik	-	RIKEN cDNA 4933401D09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103852442-1	chr3	103851942	103852942	+	825.0	f1_balb.idr	intron (NM_001142960, intron 3 of 3)	intron (NM_001142960, intron 3 of 3)	-7353.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	8.5	9.0	17.5	9.5	9.5	5.5
Merged-chr1-165119297-2	chr1	165118797	165119797	+	825.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27367.0	NR_040480	75857.0	Mm.109021	NR_040480	ENSMUSG00000102408	4930568G15Rik	-	RIKEN cDNA 4930568G15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34096660-1	chr17	34096160	34097160	+	825.0	f1_balb.idr	Intergenic	Intergenic	-1351.0	NR_046183	414076.0	Mm.473092	NR_046183	ENSMUSG00000098197	BC051537	-	cDNA sequence BC051537	ncRNA	0.0	4.5	2.0	0.0	11.5	3.5
Merged-chr9-59746548-2	chr9	59746048	59747048	+	825.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172069, intron 1 of 2)	5S|rRNA|rRNA	4101.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55491586-3	chr14	55491090	55492090	+	825.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155104, intron 1 of 38)	intron (NR_155104, intron 1 of 38)	520.0	NR_155104	268747.0	Mm.151577	NM_001024645	ENSMUSG00000022211	Carmil3	Lrrc16b|mFLJ00240	capping protein regulator and myosin 1 linker 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45544331-4	chr19	45543860	45544860	+	825.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16204.0	NM_001330506	56626.0	Mm.46509	NM_020032	ENSMUSG00000025218	Poll	1110003P06Rik|AV007317	polymerase (DNA directed), lambda	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4366808-2	chr18	4366308	4367308	+	825.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040328, intron 2 of 3)	intron (NR_040328, intron 2 of 3)	-8784.0	NM_001361008	67440.0	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65543672-2	chr9	65543172	65544172	+	825.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	36415.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-100028059-2	chr10	100027559	100028559	+	825.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347156, intron 1 of 8)	intron (NM_001347156, intron 1 of 8)	12238.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50303088-2	chr6	50302588	50303588	+	825.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347213, exon 21 of 24)	exon (NM_001347213, exon 21 of 24)	-41319.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63544154-2	chr4	63543654	63544654	+	825.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024173)	promoter-TSS (NM_024173)	-611.0	NM_024173	66290.0	Mm.371615	NM_024173	ENSMUSG00000039105	Atp6v1g1	1810024D14Rik|AA960677|ATP6J|Atp6g1|VAG1|Vma10	ATPase, H+ transporting, lysosomal V1 subunit G1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136940594-2	chr6	136940094	136941094	+	825.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301301, intron 1 of 5)	intron (NM_001301301, intron 1 of 5)	909.0	NM_001301305	11857.0	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	45.5	86.5	96.5	26.0	76.0	51.5
Merged-chr8-13672916-2	chr8	13672416	13673416	+	825.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	(CA)n|Simple_repeat|Simple_repeat	4671.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	8.5	15.0	14.5	5.5	9.5	5.5
Merged-chr7-131812964-2	chr7	131812464	131813464	+	824.974976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-153496.0	NM_173410	233919.0	Mm.208740	NM_173410	ENSMUSG00000040125	Gpr26	9630036A11Rik|A730021D22	G protein-coupled receptor 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6008038-6	chr17	6007550	6008550	+	824.972229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001113351, exon 7 of 25)	exon (NM_001113351, exon 7 of 25)	470.0	NM_001290698	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-36936546-4	chr8	36936071	36937071	+	824.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 2 of 17)	intron (NM_001194940, intron 2 of 17)	15871.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	5.5	31.0	37.5	6.5	23.5	26.0
Merged-chr5-12383432-4	chr5	12382907	12383907	+	824.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028882, exon 1 of 18)	5' UTR (NM_028882, exon 1 of 18)	241.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-45192773-3	chr16	45192276	45193276	+	824.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-31561.0	NM_001037719	208154.0	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	4.5	1.0	15.5	4.5	1.0	14.5
Merged-chr1-164007767-3	chr1	164007301	164008301	+	824.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	12912.0	NM_001355132	69962.0	Mm.27284	NM_027279	ENSMUSG00000041396	Mettl18	2810422O20Rik|C78571	methyltransferase like 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-56165766-3	chr13	56165265	56166265	+	824.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	13120.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	0.5	0.5	5.0	0.0	0.5	2.0
Merged-chr1-176862387-3	chr1	176861899	176862899	+	824.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 9 of 18)	intron (NM_001357390, intron 9 of 18)	-26266.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	7.5	2.5	1.0	0.0	0.5	1.5
Merged-chr7-29522410-4	chr7	29521914	29522914	+	824.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16954.0	NM_001081028	74206.0	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-9455394-4	chr15	9454904	9455904	+	824.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029341, intron 1 of 4)	intron (NM_029341, intron 1 of 4)	19376.0	NM_029341	75568.0	Mm.82143	NM_029341	ENSMUSG00000039676	Capsl	1700028N11Rik|AW125205	calcyphosine-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-41084510-6	chr9	41084065	41085065	+	824.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	-5059.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	4.5	11.0	21.5	0.0	0.0	8.5
Merged-chr17-45430605-4	chr17	45430106	45431106	+	824.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152810, intron 1 of 15)	RLTR13B1|LTR|ERVK	3101.0	NM_152810	71702.0	Mm.28270	NM_152810	ENSMUSG00000023932	Cdc5l	1200002I02Rik|AA408004|PCDC5RP	cell division cycle 5-like (S. pombe)	protein-coding	0.5	4.0	0.0	0.0	3.0	4.5
Merged-chr12-55870153-4	chr12	55869651	55870651	+	824.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001037756)	TTS (NM_001037756)	33785.0	NR_155205	52592.0	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74725506-2	chr15	74725006	74726006	+	824.916687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2520.0	NM_020519	57277.0	Mm.27630	NM_020519	ENSMUSG00000022596	Slurp1	1110021N19Rik|AI415082|ARS|ArsB|Slurp-1	secreted Ly6/Plaur domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19551797-4	chr10	19551289	19552289	+	824.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40160.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48265564-3	chr17	48265069	48266069	+	824.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033922, intron 2 of 5)	intron (NM_001033922, intron 2 of 5)	1274.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	0.0	0.0	2.0	0.0	0.0	2.0
Merged-chr1-9804752-3	chr1	9804246	9805246	+	824.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177547, intron 1 of 16)	Lx9|LINE|L1	6616.0	NM_177547	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84186414-8	chr17	84185830	84186830	+	824.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001001806, exon 2 of 2)	exon (NM_001001806, exon 2 of 2)	1617.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-37340149-4	chr3	37339665	37340665	+	824.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-8488.0	NM_008006	14173.0	Mm.473689	NM_008006	ENSMUSG00000037225	Fgf2	Fgf-2|Fgfb|bFGF	fibroblast growth factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117123300-3	chr5	117122802	117123802	+	824.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199685, intron 1 of 20)	intron (NM_001199685, intron 1 of 20)	3173.0	NM_001199685	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	1.5	1.0	0.0	3.0	4.5	3.0
Merged-chr18-38418166-4	chr18	38417665	38418665	+	824.858337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022996)	promoter-TSS (NM_022996)	-742.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-40644999-2	chr8	40644493	40645493	+	824.833374	f0_c57.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-10201.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	8.0	34.0	15.0	12.5	0.0	5.0
Merged-chr1-74293028-2	chr1	74292528	74293528	+	824.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_027154, exon 4 of 12)	exon (NM_027154, exon 4 of 12)	7994.0	NM_001039509	56695.0	Mm.384726	NM_019999	ENSMUSG00000026179	Pnkd	2210013N15Rik|2810403H05Rik|AI854243|Brp17|MNCb-5687|MR-1|Tahccp2	paroxysmal nonkinesiogenic dyskinesia	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97865481-2	chr15	97864981	97865981	+	824.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009504, intron 7 of 9)	intron (NM_009504, intron 7 of 9)	-20979.0	NM_001204278	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122730661-2	chr5	122730161	122731161	+	824.833313	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011026)	TTS (NM_011026)	23117.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-97758143-4	chr4	97757633	97758633	+	824.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-19493.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75797838-2	chr15	75797338	75798338	+	824.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_172121, intron 4 of 11)	intron (NM_172121, intron 4 of 11)	44070.0	NM_172121	223642.0	Mm.209800	NM_172121	ENSMUSG00000075600	Zc3h3	BC049953|Kiaa0150|Smicl|Zc3hdc3	zinc finger CCCH type containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125433486-2	chr5	125432986	125433986	+	824.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_203319, intron 1 of 26)	intron (NM_203319, intron 1 of 26)	562.0	NM_203319	208144.0	Mm.296385	NM_203319	ENSMUSG00000029480	Dhx37	Gm1050|Gm451|mKIAA1517	DEAH (Asp-Glu-Ala-His) box polypeptide 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85614654-1	chr1	85614154	85615154	+	824.833313	f1_balb.idr	intron (NM_001013817, intron 3 of 16)	B2_Mm2|SINE|B2	-10763.0	NM_175397	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44527740-3	chr10	44527245	44528245	+	824.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68997.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16106520-3	chr1	16106008	16107008	+	824.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133832, intron 1 of 5)	intron (NM_133832, intron 1 of 5)	626.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	1.5	6.0	4.0	0.0	7.0	16.5
Merged-chr18-68244589-4	chr18	68244041	68245041	+	824.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357444, intron 2 of 3)	intron (NM_001357444, intron 2 of 3)	16432.0	NR_106078	102465702.0		NR_106078	ENSMUSG00000098253	Mir7219	Gm27613|mmu-mir-7219	microRNA 7219	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147918509-4	chr5	147918014	147919014	+	824.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23699.0	NM_027872	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25164926-4	chr12	25164421	25165421	+	824.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35747.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	11.0	5.5	2.0	5.5	7.5	4.0
Merged-chr10-30677151-3	chr10	30676630	30677630	+	824.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 9 of 14)	intron (NM_001358842, intron 9 of 14)	-21263.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110816288-3	chr7	110815795	110816795	+	824.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025999)	TTS (NM_025999)	28086.0	NM_025999	67150.0	Mm.96867	NM_025999	ENSMUSG00000030788	Rnf141	2610110L04Rik|AA792898|AU022812|ZFP36|ZNF230	ring finger protein 141	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67176049-3	chr17	67175547	67176547	+	824.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 2 of 32)	intron (NM_001357625, intron 2 of 32)	-149812.0	NR_049205	100885844.0		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55629491-3	chr14	55628964	55629964	+	824.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_024267, exon 20 of 30)	exon (NM_024267, exon 20 of 30)	6220.0	NR_153401	75751.0	Mm.27546	NM_024267	ENSMUSG00000002319	Ipo4	8430408O15Rik|AA409693|Imp4a|RanBP4	importin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152368992-3	chr2	152368500	152369500	+	824.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001009948, exon 3 of 3)	3' UTR (NM_001009948, exon 3 of 3)	7566.0	NM_001009948	228777.0	Mm.330667	NM_001009948	ENSMUSG00000059361	Nrsn2	Gm123|Neurensin-2	neurensin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129145159-3	chr2	129144649	129145649	+	824.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15449.0	NM_025395	66170.0	Mm.40621	NM_025395	ENSMUSG00000037938	Chchd5	1110027L01Rik|AW045710	coiled-coil-helix-coiled-coil-helix domain containing 5	protein-coding	0.0	0.0	1.0	1.0	0.0	0.0
Merged-chr9-114748546-4	chr9	114748012	114749012	+	824.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026036, exon 4 of 4)	3' UTR (NM_026036, exon 4 of 4)	17309.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	0.0	14.0	16.5	2.5	5.0	5.0
Merged-chr9-57647574-2	chr9	57647074	57648074	+	824.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 2 of 14)	MIRb|SINE|MIR	-1921.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22873498-6	chr11	22872865	22873865	+	824.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13029.0	NM_001169114	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-90886893-4	chr13	90886399	90887399	+	824.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145879, intron 5 of 6)	intron (NM_001145879, intron 5 of 6)	18456.0	NM_001145879	435376.0	Mm.292579	NM_001145879	ENSMUSG00000078958	Atp6ap1l	EG435376	ATPase, H+ transporting, lysosomal accessory protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39610575-2	chr18	39610075	39611075	+	824.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123330.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124085005-4	chr5	124084510	124085510	+	824.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019875, intron 2 of 11)	intron (NM_019875, intron 2 of 11)	10788.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108301813-2	chr9	108301313	108302313	+	824.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001013814)	TTS (NM_001013814)	4346.0	NM_133986	102791.0	Mm.24670	NM_133986	ENSMUSG00000039461	Tcta	9130410M22Rik|AW553637|C85065|Tctal	T cell leukemia translocation altered gene	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr6-124747018-2	chr6	124746518	124747518	+	824.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_007881, exon 5 of 10)	exon (NM_007881, exon 5 of 10)	-5939.0	NM_013535	14790.0	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35937883-4	chr17	35937364	35938364	+	824.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9290.0	NR_028278	667766.0	Mm.29385	NR_028278		Gm8801	-	protein phosphatase 1, regulatory subunit 10 pseudogene	pseudo	0.0	1.5	0.0	1.0	0.0	1.0
Merged-chr3-97971466-3	chr3	97971027	97972027	+	824.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41354.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-93399817-4	chr15	93399312	93400312	+	824.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358749, intron 2 of 8)	T-rich|Low_complexity|Low_complexity	1348.0	NM_001285863	223828.0	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61133763-5	chr18	61133244	61134244	+	824.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134134, intron 20 of 20)	intron (NM_134134, intron 20 of 20)	16276.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-3805872-3	chr13	3805371	3806371	+	824.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1553.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	0.0	0.0	0.0	2.5	0.0	0.0
Merged-chr11-121685979-3	chr11	121685477	121686477	+	824.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12826.0	NM_178664	210004.0	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding	0.0	0.0	1.5	0.0	0.0	3.0
Merged-chr7-3957606-3	chr7	3957106	3958106	+	824.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42105.0	NR_028115	18726.0	Mm.440989	NM_011090	ENSMUSG00000030427	Lilra6	7M1|Pira3	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10580945-3	chr19	10580453	10581453	+	824.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362431, intron 3 of 7)	intron (NM_001362431, intron 3 of 7)	3505.0	NM_001282067	225912.0	Mm.252701	NM_201351	ENSMUSG00000034445	Cyb561a3	2310004G04Rik|Cybasc3|Lcytb	cytochrome b561 family, member A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53457212-3	chr11	53456727	53457727	+	824.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290789)	promoter-TSS (NM_001290789)	22.0	NM_027917	71774.0	Mm.274370	NM_027917	ENSMUSG00000018387	Shroom1	Apx|Shrm1	shroom family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-149445412-3	chr3	149444917	149445917	+	824.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	170680.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	1.5	6.5	0.0	0.0	0.5	2.5
Merged-chr7-126745106-2	chr7	126744606	126745606	+	824.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G3|LTR|ERVL-MaLR	-14520.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-43954121-3	chr10	43953629	43954629	+	824.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172393, intron 19 of 19)	intron (NM_172393, intron 19 of 19)	50717.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149777187-3	chr4	149776624	149777624	+	824.6348879999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-2857.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144605973-4	chr3	144605460	144606460	+	824.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	35533.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165997776-4	chr2	165997271	165998271	+	824.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	B1_Mur1|SINE|Alu	5134.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	14.0	32.0	18.5	10.5	39.0	18.5
Merged-chr7-49762846-4	chr7	49762322	49763322	+	824.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146053, intron 3 of 5)	intron (NM_001146053, intron 3 of 5)	3310.0	NM_001146052	53415.0	Mm.20801	NM_016865	ENSMUSG00000039745	Htatip2	AW111545|Cc3|Tip30	HIV-1 Tat interactive protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70873608-2	chr17	70873203	70874203	+	824.625	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13103.0	NR_035427	100316676.0		NR_035427	ENSMUSG00000080468	Mir1195	Mirn1195|mmu-mir-1195	microRNA 1195	ncRNA	6.0	0.0	2.0	0.0	0.0	0.0
Merged-chr10-58498746-4	chr10	58498242	58499242	+	824.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162956, intron 1 of 15)	intron (NM_001162956, intron 1 of 15)	805.0	NM_001162956	76138.0	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-31019377-4	chr7	31018854	31019854	+	824.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A|LTR|ERVK	20963.0	NR_106017	102465635.0		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	0.0	10.0	3.5	0.0	1.0	0.0
Merged-chr7-144923167-3	chr7	144922673	144923673	+	824.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357868, intron 4 of 4)	intron (NM_001357868, intron 4 of 4)	8073.0	NM_001347537	72284.0	Mm.273049	NM_028184	ENSMUSG00000031072	Oraov1	2210010N10Rik|TAOS1	oral cancer overexpressed 1	protein-coding	10.5	19.5	2.0	4.5	15.0	6.0
Merged-chr2-35338619-3	chr2	35338157	35339157	+	824.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1648.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19872375-2	chr7	19871875	19872875	+	824.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11076.0	NM_001033419	330483.0	Mm.260192	NM_001033419	ENSMUSG00000014686	Ceacam16	Gm769	carcinoembryonic antigen-related cell adhesion molecule 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145018355-2	chr7	145017890	145018890	+	824.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78465.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr9-106386570-5	chr9	106385997	106386997	+	824.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17865.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	2.5	2.0	6.5	6.0	2.5	1.0
Merged-chr4-136511812-4	chr4	136511304	136512304	+	824.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024452, intron 1 of 4)	intron (NM_024452, intron 1 of 4)	42043.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	18.5	32.0	34.0	36.0	33.0	44.0
Merged-chr2-24347814-3	chr2	24347369	24348369	+	824.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039701, intron 2 of 3)	intron (NM_001039701, intron 2 of 3)	2498.0	NM_001039701	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23887529-3	chr18	23887044	23888044	+	824.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 7 of 7)	L2c|LINE|L2	-67144.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91453436-3	chr2	91452916	91453916	+	824.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4115.0	NM_172668	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	6.0	1.5	11.0	6.0	1.5	9.5
Merged-chr17-57015252-2	chr17	57014752	57015752	+	824.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-3964.0	NM_133801	98053.0	Mm.24632	NM_133801	ENSMUSG00000002658	Gtf2f1	2810405L04Rik|C76800|RAP74	general transcription factor IIF, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-15838993-2	chr11	15838499	15839499	+	824.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-418725.0	NM_001290539	211739.0	Mm.284015	NM_145967	ENSMUSG00000048834	Vstm2a	Vstm2	V-set and transmembrane domain containing 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119829483-2	chr8	119828983	119829983	+	824.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	11096.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75832688-2	chr14	75832188	75833188	+	824.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	12276.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165003851-2	chr1	165003351	165004351	+	824.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-68329.0	NM_008510	16963.0	Mm.190	NM_008510	ENSMUSG00000026573	Xcl1	AI661682|ATAC|LTN|Lptn|SCM-1|SCM-1a|Scyc1	chemokine (C motif) ligand 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70832621-2	chr9	70832121	70833121	+	824.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	102187.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132019144-4	chr4	132018650	132019650	+	824.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	29928.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-48467055-4	chr9	48466545	48467545	+	824.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	12701.0	NR_026561	667933.0	Mm.491076	NR_026561		Gm8884	EG667933	predicted gene 8884	ncRNA	11.5	12.0	2.5	10.0	6.5	4.0
Merged-chr9-64121079-2	chr9	64120579	64121579	+	824.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145835, intron 5 of 13)	intron (NM_145835, intron 5 of 13)	3932.0	NM_145835	235435.0	Mm.436581	NM_145835	ENSMUSG00000032401	Lctl	E130104I05Rik|KLPH	lactase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr19-55920275-2	chr19	55919775	55920775	+	824.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142920, intron 11 of 11)	intron (NM_001142920, intron 11 of 11)	24954.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-94431001-2	chr2	94430501	94431501	+	824.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007466, intron 1 of 13)	intron (NM_007466, intron 1 of 13)	7185.0	NM_007466	11800.0	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80040509-2	chr10	80040009	80041009	+	824.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025554)	promoter-TSS (NM_025554)	-850.0	NM_025554	66420.0	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79120838-2	chr12	79120338	79121338	+	824.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-9950.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-24697798-1	chr12	24697298	24698298	+	824.5	f0_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-10456.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	6.5	3.0	9.0	1.5	0.0	0.0
Merged-chr7-19714367-2	chr7	19713867	19714867	+	824.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109748, intron 1 of 8)	intron (NM_001109748, intron 1 of 8)	1062.0	NM_001109748	53333.0	Mm.61682	NM_016871	ENSMUSG00000002984	Tomm40	AW539759|Mom35|Tom40	translocase of outer mitochondrial membrane 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8738407-2	chr3	8737907	8738907	+	824.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71369.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52071373-4	chr13	52070856	52071856	+	824.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-25385.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64573385-3	chr1	64572889	64573889	+	824.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037726, intron 4 of 6)	intron (NM_001037726, intron 4 of 6)	40585.0	NM_001037726	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121652107-4	chr8	121651523	121652523	+	824.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080855)	promoter-TSS (NM_080855)	-90.0	NM_080855	142682.0	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113607661-2	chr5	113607161	113608161	+	824.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35942.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-4390617-2	chr13	4390117	4391117	+	824.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43726.0	NM_030611	83702.0	Mm.196666	NM_030611	ENSMUSG00000021210	Akr1c6	3alpha-HSD|Akr1c1|Hsd17b5	aldo-keto reductase family 1, member C6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116985719-4	chr11	116985220	116986220	+	824.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172948, exon 17 of 17)	3' UTR (NM_172948, exon 17 of 17)	66857.0	NM_172948	268510.0	Mm.35141	NM_172948	ENSMUSG00000043857	Mgat5b	C330018B01|GnT-IX|mGnTVB	mannoside acetylglucosaminyltransferase 5, isoenzyme B	protein-coding	2.0	0.0	0.0	2.0	0.0	0.0
Merged-chr12-85647017-2	chr12	85646517	85647517	+	824.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39703.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-72410255-2	chr4	72409755	72410755	+	824.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	209011.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69793812-2	chr8	69793312	69794312	+	824.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133224, exon 2 of 26)	exon (NM_133224, exon 2 of 26)	2649.0	NM_133224	170759.0	Mm.186066	NM_133224	ENSMUSG00000031862	Atp13a1	Atp13a|Cgi152|catp	ATPase type 13A1	protein-coding	4.0	3.5	8.0	1.5	3.5	1.5
Merged-chr4-155220914-1	chr4	155220414	155221414	+	824.5	f0_balb.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	1621.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	7.5	17.0	22.0	3.5	18.0	22.0
Merged-chr18-5102096-2	chr18	5101596	5102596	+	824.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347449, intron 22 of 30)	intron (NM_001347449, intron 22 of 30)	55507.0	NM_001347449	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63164975-3	chr14	63164434	63165434	+	824.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360211, intron 1 of 7)	intron (NM_001360211, intron 1 of 7)	12953.0	NM_001360211	14137.0	Mm.474432	NM_010191	ENSMUSG00000021273	Fdft1	SQS|SS	farnesyl diphosphate farnesyl transferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-54780897-2	chr15	54780397	54781397	+	824.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34969.0	NM_010930	18133.0	Mm.5167	NM_010930	ENSMUSG00000037362	Nov	C130088N23Rik|CCN3	nephroblastoma overexpressed gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-140465578-2	chr3	140465078	140466078	+	824.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	437329.0	NR_105798	102465198.0		NR_105798	ENSMUSG00000099169	Mir7j	Gm27716|Mirlet7j|mmu-let-7j	microRNA 7j	ncRNA	0.0	0.0	0.0	1.5	0.0	0.0
Merged-chr7-128462606-2	chr7	128462106	128463106	+	824.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347641)	promoter-TSS (NM_001347641)	-933.0	NM_001347640	21843.0	Mm.242072	NM_009383	ENSMUSG00000030846	Tial1	5330433G13Rik|AL033329|TIAR|mTIAR	Tia1 cytotoxic granule-associated RNA binding protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23436419-4	chr13	23435946	23436946	+	824.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5429.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-31208822-2	chr9	31208322	31209322	+	824.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357698, intron 1 of 17)	RSINE1|SINE|B4	3026.0	NM_001357698	11804.0	Mm.19133	NM_009691	ENSMUSG00000031996	Aplp2	AI790698|APLP-2|CDEBP	amyloid beta (A4) precursor-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81638247-2	chr10	81637747	81638747	+	824.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027480, intron 7 of 19)	intron (NM_027480, intron 7 of 19)	9707.0	NM_027480	70615.0	Mm.304382	NM_027480	ENSMUSG00000054708	Ankrd24	4631433D01Rik|5730519E19Rik|D10Bur2e	ankyrin repeat domain 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94312402-5	chr10	94311853	94312853	+	824.493347	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	CpG	404.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	5.5	2.0	3.0	7.5	20.0	4.0
Merged-chr1-171610215-3	chr1	171609711	171610711	+	824.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2801.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	1.5	2.0	2.0	0.0	0.5	0.0
Merged-chr1-131974875-3	chr1	131974396	131975396	+	824.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145977, intron 1 of 4)	intron (NM_145977, intron 1 of 4)	4287.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26601086-3	chr17	26600572	26601572	+	824.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	39560.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	1.5	0.0	0.5	2.0	0.0	0.0
Merged-chr11-94070567-4	chr11	94070067	94071067	+	824.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025428, intron 4 of 26)	MLTR14|LTR|ERV1	26362.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-123242483-4	chr7	123241992	123242992	+	824.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146198, intron 6 of 16)	intron (NM_146198, intron 6 of 16)	27626.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-83487197-3	chr12	83486662	83487662	+	824.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_058212, intron 1 of 8)	CpG	574.0	NM_001267626	70127.0	Mm.151308	NM_058212	ENSMUSG00000021221	Dpf3	2810403B03Rik|6530402L11Rik|BAF45C|C78788|CERD4|cer-d4	D4, zinc and double PHD fingers, family 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127261917-4	chr10	127261419	127262419	+	824.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039000, intron 1 of 28)	MIRb|SINE|MIR	1444.0	NM_008447	16572.0	Mm.30355	NM_008447	ENSMUSG00000074657	Kif5a	D10Bwg0738e|Khc|Kif5|Kns|mKIAA4086	kinesin family member 5A	protein-coding	1.0	0.0	0.5	0.0	0.0	0.0
Merged-chr9-59929835-2	chr9	59929335	59930335	+	824.375	f1_balb.idr|f1_c57bl6.idr	TTS (NM_173018)	TTS (NM_173018)	20244.0	NM_013708	23958.0	Mm.103641	NM_013708	ENSMUSG00000032292	Nr2e3	A930035N01Rik|PNR|RNR|rd7	nuclear receptor subfamily 2, group E, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59340882-4	chr4	59340384	59341384	+	824.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 12 of 16)	intron (NM_001163288, intron 12 of 16)	80833.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	7.5	7.0	17.0	5.5	6.0	16.0
Merged-chr13-49184574-2	chr13	49184074	49185074	+	824.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2973.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41455240-4	chr19	41454754	41455754	+	824.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-69998.0	NM_001326287	627352.0	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27822660-2	chr17	27822106	27823106	+	824.349976	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2064.0	NM_001271511	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	1.5	6.0	5.0	8.0	11.5	4.0
Merged-chr10-94829583-4	chr10	94829091	94830091	+	824.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 20 of 30)	intron (NM_018797, intron 20 of 30)	114987.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127453962-4	chr2	127453444	127454444	+	824.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9379.0	NM_029629	68126.0	Mm.288676	NM_029629	ENSMUSG00000027371	Fahd2a	1500003K14Rik|B430104H02Rik|Cgi-105|Fahd2	fumarylacetoacetate hydrolase domain containing 2A	protein-coding	0.0	3.5	0.0	0.0	6.0	0.0
Merged-chr17-31492634-3	chr17	31492144	31493144	+	824.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	19843.0	NM_021322	57773.0	Mm.143771	NM_021322	ENSMUSG00000024037	Wdr4	AI415180|AI448349|D530049K22Rik|Wh	WD repeat domain 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36715569-2	chr16	36715069	36716069	+	824.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_001285791, exon 4 of 7)	exon (NM_001285791, exon 4 of 7)	21591.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38077286-2	chr15	38076786	38077786	+	824.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112721, intron 1 of 58)	intron (NM_001112721, intron 1 of 58)	1568.0	NM_001112721	70790.0	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-3024388-6	chr9	3023859	3024859	+	824.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	14384.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37120436-1	chr13	37119936	37120936	+	824.333313	f0_balb.idr	Intergenic	Intergenic	-70192.0	NM_001166391	74145.0	Mm.235105	NM_028784	ENSMUSG00000039109	F13a1	1200014I03Rik|AI462306|F13a	coagulation factor XIII, A1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114920781-3	chr6	114920283	114921283	+	824.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	1038.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101935507-2	chr5	101935007	101936007	+	824.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 15 of 66)	B4|SINE|B4	134414.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	3.5	0.0	0.0	0.0	0.0	3.0
Merged-chr7-19790133-3	chr7	19789641	19790641	+	824.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161844, intron 5 of 10)	intron (NM_001161844, intron 5 of 10)	6668.0	NM_001161844	80794.0	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52262659-4	chr3	52262134	52263134	+	824.325012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5703.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81526943-4	chr10	81526454	81527454	+	824.325012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2729.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-119079465-4	chr10	119078950	119079950	+	824.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13455.0	NR_045348	73400.0	Mm.416864	NR_045348	ENSMUSG00000100681	1700064J06Rik	-	RIKEN cDNA 1700064J06 gene	ncRNA	0.0	0.0	0.5	0.0	3.5	1.5
Merged-chr2-86020637-4	chr2	86020107	86021107	+	824.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146578)	promoter-TSS (NM_146578)	-33.0	NM_146578	258571.0	Mm.223099	NM_146578	ENSMUSG00000045392	Olfr1033	MOR199-2	olfactory receptor 1033	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80377673-2	chr7	80377172	80378172	+	824.291626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010194)	TTS (NM_010194)	-6297.0	NM_172903	140481.0	Mm.269245	NM_172903	ENSMUSG00000038886	Man2a2	1700052O22Rik|4931438M07Rik|AI480988|MX|Man IIx	mannosidase 2, alpha 2	protein-coding	0.0	5.0	16.0	1.0	7.0	6.0
Merged-chr8-117537085-4	chr8	117536578	117537578	+	824.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 2 of 32)	B4A|SINE|B4	38803.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11772971-2	chr11	11772471	11773471	+	824.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001301868)	TTS (NM_001301868)	35991.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	1.0	2.0	4.0	11.0	5.0	3.5
Merged-chr5-64070308-2	chr5	64069808	64070808	+	824.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22631.0	NM_025700	66681.0	Mm.2325	NM_025700	ENSMUSG00000029171	Pgm1	3230402E02Rik|Pgm-1|Pgm2	phosphoglucomutase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142890609-4	chr3	142890097	142891097	+	824.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152127, intron 1 of 1)	MTC|LTR|ERVL-MaLR	8102.0	NR_152127	320229.0	Mm.187582	NR_152127		9530052C20Rik	-	RIKEN cDNA 9530052C20 gene	ncRNA	6.5	5.0	3.5	6.5	5.0	2.5
Merged-chr11-4095310-4	chr11	4094819	4095819	+	824.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026443, exon 1 of 4)	5' UTR (NM_026443, exon 1 of 4)	112.0	NM_026443	67900.0	Mm.41719	NM_026443	ENSMUSG00000004748	Mtfp1	1700020C11Rik|2610507A21Rik|AV005788|Mtp18	mitochondrial fission process 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27493249-4	chr7	27492764	27493764	+	824.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6060.0	NM_198048	19153.0	Mm.10119	NM_019412	ENSMUSG00000053198	Prx	L-Periaxin	periaxin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117281859-4	chr8	117281310	117282310	+	824.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	24791.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45612329-4	chr4	45611834	45612834	+	824.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27602.0	NR_151513	100040557.0	Mm.383510	NR_151513	ENSMUSG00000085980	Gm12408	-	predicted gene 12408	ncRNA	0.0	11.5	0.0	2.0	0.0	0.5
Merged-chr2-32502064-4	chr2	32501569	32502569	+	824.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33290.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55249431-4	chr13	55248925	55249925	+	824.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008739, intron 5 of 22)	intron (NM_008739, intron 5 of 22)	39643.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34926494-2	chr17	34925994	34926994	+	824.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_023557, intron 13 of 20)	ID_B1|SINE|B4	-4759.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77777287-2	chr15	77776787	77777787	+	824.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 19 of 40)	intron (NM_022410, intron 19 of 40)	-20277.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78019883-2	chr11	78019383	78020383	+	824.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_174852, intron 7 of 14)	intron (NM_174852, intron 7 of 14)	-12430.0	NM_183286	70451.0	Mm.390342	NM_183286	ENSMUSG00000020834	Dhrs13	2610209N15Rik	dehydrogenase/reductase (SDR family) member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64198508-4	chr1	64198015	64199015	+	824.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77126.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45593683-3	chr17	45593148	45594148	+	824.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199113)	promoter-TSS (NM_001199113)	-8.0	NM_001199113	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	2.5	4.5	8.0	4.5	5.0	3.0
Merged-chr17-47515711-4	chr17	47515200	47516200	+	824.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	10649.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-8082891-3	chr5	8082387	8083387	+	824.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310440, intron 29 of 30)	intron (NM_001310440, intron 29 of 30)	26345.0	NM_001080974	109552.0	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10904989-3	chr19	10904485	10905485	+	824.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134129, intron 15 of 15)	intron (NM_134129, intron 15 of 15)	6340.0	NM_001253844	28000.0	Mm.491104	NM_134129	ENSMUSG00000024735	Prpf19	AA617263|AL024362|D19Wsu55e|NMP200|PSO4|Prp19|Snev	pre-mRNA processing factor 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132707865-3	chr7	132707370	132708370	+	824.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69046.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-31253585-3	chr9	31253127	31254127	+	824.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17774.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137823413-4	chr5	137822926	137823926	+	824.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001005426)	TTS (NM_001005426)	12852.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-99238904-4	chr13	99238404	99239404	+	824.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 3 of 4)	intron (NM_001004149, intron 3 of 4)	54081.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	0.0	5.0	1.0	0.0	0.0	0.0
Merged-chr7-28371687-5	chr7	28371242	28372242	+	824.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001290542, exon 1 of 19)	5' UTR (NM_001290542, exon 1 of 19)	920.0	NM_138752	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83687163-6	chr17	83686612	83687612	+	824.194458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-19051.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101160150-4	chr15	101159608	101160608	+	824.1875	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13964.0	NM_007395	11479.0	Mm.308467	NM_007395	ENSMUSG00000000532	Acvr1b	6820432J04|ALK-4|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding	15.0	44.0	32.0	6.0	23.0	17.5
Merged-chr4-57673455-2	chr4	57672955	57673955	+	824.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304544, intron 3 of 8)	intron (NM_001304544, intron 3 of 8)	105207.0	NM_172868	242481.0	Mm.331630	NM_172868	ENSMUSG00000090053	Palm2	53-H12|B130066I24|R75368|pEN70	paralemmin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103327142-3	chr11	103326641	103327641	+	824.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17561.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92674219-2	chr16	92673719	92674719	+	824.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 4 of 6)	intron (NM_001111022, intron 4 of 6)	23110.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	10.5	1.0	5.0	13.0	3.0
Merged-chr9-21155010-4	chr9	21154501	21155501	+	824.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-5095.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-127023221-2	chr4	127022721	127023721	+	824.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_023603, intron 2 of 9)	intron (NM_023603, intron 2 of 9)	1920.0	NM_023603	71514.0	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116919456-2	chr11	116918956	116919956	+	824.166626	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172948, exon 1 of 17)	5' UTR (NM_172948, exon 1 of 17)	593.0	NM_172948	268510.0	Mm.35141	NM_172948	ENSMUSG00000043857	Mgat5b	C330018B01|GnT-IX|mGnTVB	mannoside acetylglucosaminyltransferase 5, isoenzyme B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-65142339-2	chr6	65141839	65142839	+	824.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019455, intron 1 of 5)	intron (NM_019455, intron 1 of 5)	2391.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-28601846-4	chr13	28601311	28602311	+	824.162476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045054, intron 6 of 7)	ORR1F|LTR|ERVL-MaLR	109062.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104569613-4	chr9	104569116	104570116	+	824.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028719, exon 1 of 16)	5' UTR (NM_028719, exon 1 of 16)	133.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	2.0	0.0	0.5	1.5	0.0	0.5
Merged-chr17-28908045-2	chr17	28907545	28908545	+	824.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_172450, intron 3 of 11)	intron (NM_172450, intron 3 of 11)	2780.0	NR_045457	74179.0	Mm.248931	NR_045457	ENSMUSG00000085333	1700030A11Rik	-	RIKEN cDNA 1700030A11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46735731-4	chr8	46735224	46736224	+	824.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045750, intron 2 of 2)	intron (NR_045750, intron 2 of 2)	3791.0	NR_045750	100503498.0	Mm.187358	NR_045750	ENSMUSG00000097534	Gm16675	-	predicted gene, 16675	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122722316-3	chr10	122721816	122722816	+	824.122253	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	MLT1B|LTR|ERVL-MaLR	43001.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0.0	1.0	0.0	0.0	4.0	0.0
Merged-chr8-83859762-3	chr8	83859266	83860266	+	824.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-40332.0	NM_181039	330814.0	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	5.0	9.5	10.5	4.0	0.0	0.0
Merged-chr6-28136079-4	chr6	28135563	28136563	+	824.104126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361125)	promoter-TSS (NM_001361125)	-917.0	NM_001361125	14823.0	Mm.320732	NM_008174	ENSMUSG00000024211	Grm8	A230002O04|GluR8|Gprc1h|mGluR8	glutamate receptor, metabotropic 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34864382-4	chr6	34863838	34864838	+	824.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197986, intron 1 of 1)	intron (NM_197986, intron 1 of 1)	1192.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-6547493-2	chr13	6546993	6547993	+	824.083313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145131)	promoter-TSS (NM_145131)	-664.0	NM_145131	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137757405-4	chr5	137756914	137757914	+	824.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023910, intron 3 of 4)	intron (NM_023910, intron 3 of 4)	11445.0	NM_029805	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7598346-3	chr10	7597854	7598854	+	824.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172784, intron 2 of 6)	L3b|LINE|CR1	8554.0	NM_001359743	237253.0	Mm.206759	NM_172784	ENSMUSG00000019796	Lrp11	1700034J19Rik|6330533B21|9830160H19Rik	low density lipoprotein receptor-related protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63283470-3	chr4	63282966	63283966	+	824.022217	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025685, intron 22 of 60)	Charlie1b|DNA|hAT-Charlie	26615.0	NR_030477	735262.0		NR_030477	ENSMUSG00000070102	Mir455	Mirn455|mir-455|mmu-mir-455	microRNA 455	ncRNA	1.0	3.5	5.0	0.0	3.5	7.0
Merged-chr8-94923631-3	chr8	94923130	94924130	+	824.022217	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145972)	promoter-TSS (NM_001145972)	-64.0	NM_001033468	382045.0	Mm.334726	NM_001033468	ENSMUSG00000061577	Adgrg5	Gm1109|Gpr114|PGR27	adhesion G protein-coupled receptor G5	protein-coding	0.0	4.0	4.5	1.0	8.0	1.5
Merged-chr6-50544295-2	chr6	50543795	50544795	+	824.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22179.0	NM_007808	13063.0	Mm.35389	NM_007808	ENSMUSG00000063694	Cycs	-	cytochrome c, somatic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35917490-2	chr9	35916990	35917990	+	824.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-67610.0	NR_030730	100041605.0	Mm.99350	NR_030730	ENSMUSG00000098705	Gm3428	-	predicted gene 3428	ncRNA	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr1-132390367-3	chr1	132389851	132390851	+	824.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311107)	promoter-TSS (NM_001311107)	-33.0	NM_001311107	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0.0	3.5	1.5	2.5	0.5	11.5
Merged-chr4-133619945-2	chr4	133619445	133620445	+	824.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001017968, intron 2 of 7)	intron (NM_001017968, intron 2 of 7)	13484.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	2.5	0.0	0.0	6.0	12.0	1.5
Merged-chr12-85384661-2	chr12	85384161	85385161	+	824.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-9944.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152527499-2	chr1	152526999	152527999	+	824.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 15 of 17)	intron (NM_016846, intron 15 of 17)	97718.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128414876-4	chr2	128414332	128415332	+	824.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	14519.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	19.0	26.5	7.5	5.5	21.0	6.5
Merged-chr5-139537210-2	chr5	139536710	139537710	+	824.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040701, intron 2 of 3)	intron (NR_040701, intron 2 of 3)	-6688.0	NM_013702	22255.0	Mm.42190	NM_013702	ENSMUSG00000029546	Uncx	Chx4|Uncx4.1	UNC homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-41377076-1	chr3	41376576	41377576	+	824.0	f0_balb.idr	Intergenic	Intergenic	116123.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-64042549-2	chr14	64042049	64043049	+	824.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42861.0	NM_001081063	71037.0	Mm.19977	NM_001081063	ENSMUSG00000034623	Prss55	4933401F05Rik	protease, serine 55	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-106518141-1	chr14	106517641	106518641	+	824.0	f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-31621.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	6.0	3.0	0.0	2.0	0.0	2.0
Merged-chr17-29431062-2	chr17	29430562	29431562	+	824.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-59983.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	12.0	4.5	18.5	5.5	13.5	6.0
Merged-chr5-112951695-2	chr5	112951217	112952217	+	824.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 9 of 20)	MER67A|LTR|ERV1	-55355.0	NM_028901	74376.0	Mm.441903	NM_028901	ENSMUSG00000072720	Myo18b	4932408L24Rik|4933411E19Rik|Gm448	myosin XVIIIb	protein-coding	8.5	2.5	13.0	22.0	20.0	15.5
Merged-chr11-53296781-2	chr11	53296281	53297281	+	824.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008300, intron 1 of 18)	B1_Mus2|SINE|Alu	3698.0	NM_008300	15525.0	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27175165-2	chr7	27174665	27175665	+	824.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_037283)	TTS (NR_037283)	928.0	NR_037283	100526505.0		NR_037283	ENSMUSG00000093348	Mir3101	mir-3101|mmu-mir-3101	microRNA 3101	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37677463-2	chr13	37676963	37677963	+	824.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-148575.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44235916-2	chr9	44235416	44236416	+	824.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1870.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-82087112-2	chr5	82086612	82087612	+	824.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A0-int|LTR|ERVL-MaLR	37601.0	NR_138557	67327.0	Mm.87058	NR_138557		1700031L13Rik	-	RIKEN cDNA 1700031L13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12939628-2	chr13	12939128	12940128	+	824.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A1|LTR|ERVL-MaLR	65702.0	NM_031191	18811.0	Mm.88796	NM_031191	ENSMUSG00000079092	Prl2c2	Ghd2|MRP-1|PLF-1|Plf|Plf1	prolactin family 2, subfamily c, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65387089-3	chr3	65386590	65387590	+	824.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026155, intron 3 of 4)	Lx9|LINE|L1	5463.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	0.0	5.5	9.0	0.0	5.5	9.0
Merged-chr11-15277179-2	chr11	15276679	15277679	+	824.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	677939.0	NM_001164166	432536.0	Mm.33646	NM_001164166	ENSMUSG00000084135	Pom121l12	1700054H16Rik	POM121 membrane glycoprotein-like 12	protein-coding	0.0	0.0	4.5	0.0	0.0	4.5
Merged-chr13-107619614-1	chr13	107619114	107620114	+	824.0	f1_balb.idr	Intergenic	Intergenic	-67783.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108080333-2	chr9	108079833	108080833	+	824.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008243)	promoter-TSS (NM_008243)	-103.0	NM_008243	15235.0	Mm.8369	NM_008243	ENSMUSG00000032591	Mst1	D3F15S2h|D9H3F15S2|DNF15S2h|Hgfl	macrophage stimulating 1 (hepatocyte growth factor-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-44464402-2	chr6	44463902	44464902	+	824.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-595659.0	NM_001004357	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77827538-2	chr11	77827038	77828038	+	824.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001291212, exon 16 of 41)	exon (NM_001291212, exon 16 of 41)	26240.0	NM_001291215	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-35666438-2	chr13	35665938	35666938	+	824.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009881, intron 1 of 9)	intron (NM_009881, intron 1 of 9)	6576.0	NM_009881	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50189067-3	chr17	50188567	50189567	+	824.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 1 of 9)	intron (NM_181397, intron 1 of 9)	1430.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103345686-2	chr11	103345238	103346238	+	824.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045346, intron 2 of 3)	intron (NR_045346, intron 2 of 3)	985.0	NR_045346	653030.0	Mm.440684	NR_045346	ENSMUSG00000085887	Arhgap27os3	F830206d12rik|Gm11648	Rho GTPase activating protein 27, opposite strand 3	ncRNA	0.0	5.5	8.5	3.5	5.5	11.0
Merged-chr1-16687552-2	chr1	16687049	16688049	+	824.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016923)	promoter-TSS (NM_016923)	-907.0	NM_016923	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	58.0	162.5	130.0	55.5	165.0	135.0
Merged-chr9-123868658-2	chr9	123868158	123869158	+	824.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6629.0	NM_011798	23832.0	Mm.390241	NM_011798	ENSMUSG00000060509	Xcr1	Ccxcr1|Gpr5|mXcr1	chemokine (C motif) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157913568-2	chr2	157913068	157914068	+	824.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1085.0	NM_198627	277432.0	Mm.441156	NM_198627	ENSMUSG00000037843	Vstm2l	Gm691	V-set and transmembrane domain containing 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139716856-2	chr5	139716356	139717356	+	824.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_174850, intron 5 of 16)	intron (NM_174850, intron 5 of 16)	19477.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	0.0	0.5	1.5	4.0	0.5	0.0
Merged-chr2-167981385-2	chr2	167980885	167981885	+	824.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080708, intron 20 of 21)	intron (NM_001080708, intron 20 of 21)	29208.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-33354776-2	chr8	33354276	33355276	+	824.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122822, intron 1 of 33)	MTC|LTR|ERVL-MaLR	30751.0	NM_001122822	22427.0	Mm.228805	NM_011721	ENSMUSG00000031583	Wrn	AI846146	Werner syndrome RecQ like helicase	protein-coding	13.0	25.5	2.5	5.5	19.5	2.5
Merged-chr5-124474984-2	chr5	124474484	124475484	+	824.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030259, intron 1 of 3)	intron (NM_030259, intron 1 of 3)	3251.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118904032-2	chr7	118903532	118904532	+	824.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081446, intron 6 of 8)	intron (NM_001081446, intron 6 of 8)	-48034.0	NM_023197	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	0.0	1.5	0.5	0.0	0.0	1.5
Merged-chr11-106153088-2	chr11	106152588	106153588	+	824.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 15 of 15)	B4A|SINE|B4	6839.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96583093-1	chr3	96582593	96583593	+	824.0	f1_balb.idr	intron (NM_027241, intron 1 of 7)	B3A|SINE|B2	11088.0	NM_027241	69870.0	Mm.292739	NM_027241	ENSMUSG00000028104	Polr3gl	2010003I19Rik	polymerase (RNA) III (DNA directed) polypeptide G like	protein-coding	0.0	1.5	4.0	0.0	2.0	2.5
Merged-chr10-24653034-1	chr10	24652534	24653534	+	824.0	f1_c57bl6.idr	intron (NM_001308329, intron 18 of 24)	intron (NM_001308329, intron 18 of 24)	57592.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0.0	2.0	1.0	0.5	2.5	8.0
Merged-chr7-68128099-2	chr7	68127599	68128599	+	824.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	136134.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11018387-2	chr16	11017887	11018887	+	824.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	9489.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99497297-4	chr15	99496849	99497849	+	823.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028224, exon 12 of 12)	3' UTR (NM_028224, exon 12 of 12)	-22619.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	4.5	2.5	5.0	4.0	0.5	2.0
Merged-chr15-101198469-6	chr15	101198015	101199015	+	823.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007395, intron 3 of 8)	intron (NM_007395, intron 3 of 8)	4646.0	NR_105927	102466774.0		NR_105927	ENSMUSG00000106563	Mir6962	mmu-mir-6962	microRNA 6962	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34025235-4	chr11	34024748	34025748	+	823.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-21680.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117294631-2	chr8	117294101	117295101	+	823.916687	f0_balb.idr|f0_c57.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	37582.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76959069-2	chr14	76958558	76959558	+	823.916626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	77559.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	2.5	0.0	5.0	5.5	0.0	0.0
Merged-chr11-75152737-7	chr11	75152216	75153216	+	823.904785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 15 of 18)	intron (NM_001002764, intron 15 of 18)	15436.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	71.5	78.0	58.5	22.0	75.0	57.5
Merged-chr1-11637236-3	chr1	11636732	11637732	+	823.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160369, intron 7 of 13)	intron (NM_001160369, intron 7 of 13)	223127.0	NM_001160371	320492.0	Mm.52021	NM_177173	ENSMUSG00000057715	A830018L16Rik	-	RIKEN cDNA A830018L16 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50799995-3	chr14	50799497	50800497	+	823.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4269.0	NM_001111119	239083.0	Mm.343880	NM_001111119	ENSMUSG00000071470	Ccnb1ip1	Gm288|Hei10|mei4	cyclin B1 interacting protein 1	protein-coding	2.5	1.0	3.5	0.0	1.5	0.5
Merged-chr4-129960135-6	chr4	129959503	129960503	+	823.872192	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040647)	promoter-TSS (NR_040647)	-371.0	NR_040647	72225.0	Mm.102193	NR_040647		1700003M07Rik	-	RIKEN cDNA 1700003M07 gene	ncRNA	0.0	1.0	2.0	0.5	0.0	0.5
Merged-chr7-120201587-4	chr7	120201094	120202094	+	823.849976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016669, intron 1 of 7)	intron (NM_016669, intron 1 of 7)	394.0	NM_016669	12971.0	Mm.9114	NM_016669	ENSMUSG00000030905	Crym	-	crystallin, mu	protein-coding	2.5	0.0	3.0	2.5	0.0	3.0
Merged-chr17-47600664-2	chr17	47600164	47601164	+	823.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081636)	TTS (NM_001081636)	7197.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-39003962-2	chr2	39003462	39004462	+	823.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025592, intron 3 of 3)	intron (NM_025592, intron 3 of 3)	1169.0	NM_025592	66489.0	Mm.345333	NM_025592	ENSMUSG00000062997	Rpl35	2410039E09Rik	ribosomal protein L35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12010111-2	chr19	12009598	12010598	+	823.833374	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	26642.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135685154-4	chr1	135684641	135685641	+	823.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34922.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153058555-1	chr2	153058055	153059055	+	823.833313	f1_c57bl6.idr	Intergenic	Intergenic	-7400.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	0.0	19.5	2.0	2.5	0.0	0.0
Merged-chr5-21130583-3	chr5	21130106	21131106	+	823.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-45673.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57637830-3	chr10	57637337	57638337	+	823.8222049999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039051, intron 1 of 4)	intron (NM_001039051, intron 1 of 4)	5856.0	NM_001039051	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35190183-4	chr17	35189624	35190624	+	823.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1684.0	NM_010734	16988.0	Mm.19379	NM_010734	ENSMUSG00000073412	Lst1	B144	leukocyte specific transcript 1	protein-coding	24.0	36.5	48.0	22.5	64.5	55.5
Merged-chr8-14952605-2	chr8	14952105	14953105	+	823.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037736, intron 10 of 27)	intron (NM_001037736, intron 10 of 27)	40942.0	NM_001037736	234094.0	Mm.240298	NM_172751	ENSMUSG00000071176	Arhgef10	6430549H08Rik|mKIAA0294	Rho guanine nucleotide exchange factor (GEF) 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50364507-4	chr16	50363982	50364982	+	823.783325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 2 of 16)	intron (NM_027444, intron 2 of 16)	67907.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94630926-3	chr11	94630429	94631429	+	823.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133807, intron 1 of 6)	MIR|SINE|MIR	1105.0	NM_133807	98238.0	Mm.172720	NM_133807	ENSMUSG00000020869	Lrrc59	AA959742|C78668	leucine rich repeat containing 59	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-174084942-3	chr1	174084439	174085439	+	823.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4099.0	NM_146722	258717.0	Mm.377652	NM_146722	ENSMUSG00000049528	Olfr429	MOR105-1	olfactory receptor 429	protein-coding	4.5	10.5	8.5	17.5	4.0	2.5
Merged-chr4-134628770-3	chr4	134628272	134629272	+	823.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 2 of 11)	intron (NM_207237, intron 2 of 11)	-60921.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-149086717-4	chr3	149086190	149087190	+	823.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132055.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.5	6.5	3.5	3.0	12.0	10.5
Merged-chr19-34518726-2	chr19	34518226	34519226	+	823.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	8748.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107696296-4	chr9	107695829	107696829	+	823.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011349, intron 2 of 17)	intron (NM_011349, intron 2 of 17)	9262.0	NM_001311151	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	0.0	7.5	2.0	3.5	13.5	3.0
Merged-chr18-13006514-4	chr18	13006027	13007027	+	823.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153087)	promoter-TSS (NM_153087)	-463.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36693562-2	chr18	36693062	36694062	+	823.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172831, intron 3 of 12)	Lx4A|LINE|L1	2363.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	0.5	0.0	6.0	0.0	0.0	0.0
Merged-chr17-7864908-3	chr17	7864361	7865361	+	823.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-59887.0	NM_001081416	68655.0	Mm.379161	NM_001081416	ENSMUSG00000071984	Fndc1	1110027O12Rik|1110051A18Rik|mKIAA1866	fibronectin type III domain containing 1	protein-coding	0.0	12.0	0.5	0.0	0.0	1.0
Merged-chr1-43503790-2	chr1	43503290	43504290	+	823.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	58039.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-100503932-4	chr9	100503451	100504451	+	823.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010878, intron 2 of 3)	B1_Mm|SINE|Alu	2905.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	28.5	75.0	88.5	60.5	92.0	83.0
Merged-chr1-131138900-4	chr1	131138406	131139406	+	823.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145508)	promoter-TSS (NM_145508)	-672.0	NM_145508	226419.0	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60729034-2	chr13	60728534	60729534	+	823.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 15 of 26)	intron (NM_134062, intron 15 of 26)	57330.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123287549-4	chr8	123287054	123288054	+	823.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016925, intron 26 of 42)	intron (NM_016925, intron 26 of 42)	31022.0	NM_016925	14087.0	Mm.6536	NM_016925	ENSMUSG00000032815	Fanca	AW208693|FACA	Fanconi anemia, complementation group A	protein-coding	30.0	84.5	41.0	32.5	86.5	54.0
Merged-chr18-67308437-4	chr18	67307953	67308953	+	823.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053261, intron 3 of 7)	intron (NM_053261, intron 3 of 7)	19230.0	NM_053261	114663.0	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	2.0	0.5	1.5	2.0	0.5	1.5
Merged-chr4-19741122-4	chr4	19740606	19741606	+	823.700012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21220.0	NR_151541	102632246.0		NR_151541		Gm12354	-	predicted gene 12354	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98859217-4	chr11	98858633	98859633	+	823.700012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4465.0	NM_197940	68524.0	Mm.28661	NM_197940	ENSMUSG00000038013	Wipf2	1110014J05Rik|5730509C05Rik|AA407487|Gm1176|Wich|Wire	WAS/WASL interacting protein family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145750754-3	chr6	145750276	145751276	+	823.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57607.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	1.5	0.0	0.5	7.5	0.0	0.0
Merged-chr3-119814941-4	chr3	119814445	119815445	+	823.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31557.0	NM_019550	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-5099960-3	chr7	5099475	5100475	+	823.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16936.0	NM_001145013	192658.0	Mm.28764	NM_138954	ENSMUSG00000035191	Rfpl4	D7Ertd486e|Rfpl4a	ret finger protein-like 4	protein-coding	8.5	29.0	40.5	7.0	23.5	24.0
Merged-chr16-33261798-3	chr16	33261315	33262315	+	823.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080557, intron 1 of 13)	RMER4A|LTR|ERVK	10359.0	NM_080557	69150.0	Mm.28196	NM_080557	ENSMUSG00000022808	Snx4	1810036H14Rik|AI037066	sorting nexin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-127261279-3	chr1	127260770	127261770	+	823.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 2 of 17)	RLTR28|LTR|ERVL	56284.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-18195262-3	chr10	18194805	18195805	+	823.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195036, intron 3 of 20)	intron (NM_001195036, intron 3 of 20)	15585.0	NM_001195036	100045792.0	Mm.380617	NM_001195036	ENSMUSG00000071392	Ect2l	C330021H03Rik|Gm10331	epithelial cell transforming sequence 2 oncogene-like	protein-coding	4.5	11.5	4.0	17.0	18.5	14.5
Merged-chr19-3829868-2	chr19	3829368	3830368	+	823.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-21905.0	NM_001271496	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109333326-3	chr4	109332822	109333822	+	823.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007943, intron 12 of 24)	intron (NM_007943, intron 12 of 24)	-9734.0	NM_001159964	13858.0	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75716338-4	chr18	75715848	75716848	+	823.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18652.0	NM_201354	269037.0	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	0.0	1.0	5.5	17.5	0.0	2.0
Merged-chr7-140922599-2	chr7	140922099	140923099	+	823.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_133946, exon 4 of 8)	exon (NM_133946, exon 4 of 8)	1697.0	NM_133946	101613.0	Mm.386833	NM_133946	ENSMUSG00000038745	Nlrp6	AI504961|Avr|Nalp6|Navr|Navr/Avr|Non-AVR|Pypaf5	NLR family, pyrin domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88544866-2	chr3	88544366	88545366	+	823.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_016899, intron 2 of 4)	intron (NM_016899, intron 2 of 4)	3413.0	NM_016899	53868.0	Mm.26994	NM_016899	ENSMUSG00000008601	Rab25	AV012978	RAB25, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120902151-2	chr11	120901651	120902651	+	823.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_027745, intron 6 of 18)	intron (NM_027745, intron 6 of 18)	30721.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105719115-2	chr5	105718615	105719615	+	823.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	18305.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	9.0	5.5	9.5	1.0	9.5	10.5
Merged-chr17-69178878-4	chr17	69178349	69179349	+	823.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	19493.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	7.5	31.5	25.0	8.5	31.5	24.5
Merged-chr13-61241755-4	chr13	61241249	61242249	+	823.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13599.0	NM_019541	56094.0	Mm.342861	NM_019541	ENSMUSG00000057446	Cts8	CTS2|Epcs68|Epcs70	cathepsin 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76710020-4	chr12	76709407	76710407	+	823.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013675, intron 1 of 35)	CpG	640.0	NM_013675	20741.0	Mm.32881	NM_013675	ENSMUSG00000021061	Sptb	AI842465|D330027P03Rik|Gm1301|Spnb-1|Spnb1|ja|jaundiced|mKIAA4219	spectrin beta, erythrocytic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4109058-4	chr8	4108536	4109536	+	823.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3272.0	NM_026956	69142.0	Mm.171061	NM_026956	ENSMUSG00000051906	Cd209f	1810029C22Rik|AI647041|SIGNR8	CD209f antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-64511742-2	chr18	64511242	64512242	+	823.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142950, intron 4 of 14)	intron (NM_001142950, intron 4 of 14)	4815.0	NM_027350	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95646256-2	chr3	95645756	95646756	+	823.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-12465.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	12.0	3.5	0.5	5.0	4.5	5.5
Merged-chr4-152131661-4	chr4	152131154	152132154	+	823.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207688, intron 3 of 10)	CpG-10714	-2729.0	NM_019585	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-121077357-4	chr6	121076817	121077817	+	823.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270475, intron 1 of 31)	intron (NM_001270475, intron 1 of 31)	4310.0	NM_153396	194401.0	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	10.0	23.5	8.5	0.0	15.5	12.5
Merged-chr12-17693135-4	chr12	17692639	17693639	+	823.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	2330.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	5.0	41.5	20.5	14.0	15.0	17.5
Merged-chr10-23522804-3	chr10	23522306	23523306	+	823.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-172863.0	NM_010167	14051.0	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-85151098-3	chr16	85150565	85151565	+	823.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	22642.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	5.0	19.5	9.0	23.0	85.5	53.5
Merged-chr15-6326228-6	chr15	6325745	6326745	+	823.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	26456.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107802040-3	chr4	107801534	107802534	+	823.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033496)	promoter-TSS (NR_033496)	-225.0	NR_033496	16975.0	Mm.442134	NM_053073	ENSMUSG00000028613	Lrp8	4932703M08Rik|AA921429|AI848122|ApoER2|Lr8b	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	protein-coding	0.0	2.5	7.0	2.0	0.0	2.0
Merged-chr11-109244775-3	chr11	109244256	109245256	+	823.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165934, intron 13 of 16)	intron (NM_001165934, intron 13 of 16)	53425.0	NM_001165934	19739.0	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-129724197-3	chr3	129723703	129724703	+	823.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010113, intron 6 of 23)	intron (NM_010113, intron 6 of 23)	883.0	NM_001310737	13645.0	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180919889-3	chr1	180919399	180920399	+	823.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15123.0	NM_010094	13590.0	Mm.378911	NM_010094	ENSMUSG00000038793	Lefty1	AI450052|Ebaf|Leftb|Stra3|Tgfb4|lefty|lefty-1	left right determination factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-70097988-4	chr10	70097497	70098497	+	823.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111121, intron 1 of 8)	CpG	876.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36824232-4	chr17	36823722	36824722	+	823.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30|LTR|ERV1	12047.0	NM_201611	399549.0	Mm.329034	NM_201611	ENSMUSG00000037130	H2-M10.6	-	histocompatibility 2, M region locus 10.6	protein-coding	5.0	2.0	1.0	0.0	0.5	1.0
Merged-chr9-31131918-4	chr9	31131396	31132396	+	823.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011176)	promoter-TSS (NM_011176)	-97.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133837110-4	chr4	133836553	133837553	+	823.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37678.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	2.0	4.0	3.0	1.5	3.5	2.0
Merged-chr2-144214698-4	chr2	144214212	144215212	+	823.520813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25422.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120164332-2	chr10	120163832	120164832	+	823.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359184, intron 8 of 11)	intron (NM_001359184, intron 8 of 11)	37265.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35871605-2	chr17	35871105	35872105	+	823.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146710, intron 2 of 3)	intron (NM_001146710, intron 2 of 3)	4990.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	23.5	36.0	14.0	2.5	10.0	6.0
Merged-chr16-33749829-2	chr16	33749329	33750329	+	823.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 10 of 14)	intron (NM_175256, intron 10 of 14)	-44208.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-153876588-2	chr4	153876088	153877088	+	823.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73888.0	NR_040670	407793.0	Mm.260950	NR_040670		BC039966	-	cDNA sequence BC039966	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106171649-2	chr9	106171141	106172141	+	823.5	f0_balb.idr|f1_balb.idr	intron (NM_029896, intron 1 of 8)	intron (NM_029896, intron 1 of 8)	712.0	NM_029896	77305.0	Mm.265125	NM_029896	ENSMUSG00000020257	Wdr82	9430077D24Rik|CDW5/WDR82	WD repeat domain containing 82	protein-coding	30.0	52.5	42.0	17.0	47.0	53.5
Merged-chr14-13358801-2	chr14	13358301	13359301	+	823.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028052, intron 2 of 5)	intron (NM_028052, intron 2 of 5)	74021.0	NM_028052	72003.0	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97438850-2	chr11	97438350	97439350	+	823.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11310.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-12010359-2	chr4	12009859	12010859	+	823.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43785.0	NR_040577	100503636.0	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11091780-2	chr8	11091280	11092280	+	823.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83350.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-83282548-2	chr4	83282043	83283043	+	823.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 2 of 19)	intron (NM_027238, intron 2 of 19)	41646.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0.0	3.5	0.0	0.5	0.5	3.0
Merged-chr15-62310986-2	chr15	62310486	62311486	+	823.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91535.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	4.0	0.0	0.0	6.0	3.0	10.5
Merged-chr14-74774360-3	chr14	74773843	74774843	+	823.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 19 of 19)	intron (NM_001033439, intron 19 of 19)	42046.0	NM_016903	13885.0	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51452961-2	chr10	51452461	51453461	+	823.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL1|LINE|L1	-27651.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115475181-2	chr11	115474681	115475681	+	823.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361594)	promoter-TSS (NM_001361594)	-486.0	NM_177778	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-52082544-3	chr9	52082035	52083035	+	823.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009041, exon 12 of 14)	exon (NM_009041, exon 12 of 14)	-33088.0	NR_105750	102465150.0		NR_105750	ENSMUSG00000099311	Mir6244	Gm27368|mmu-mir-6244	microRNA 6244	ncRNA	2.5	18.0	5.0	1.5	14.5	2.0
Merged-chr5-99238600-2	chr5	99238100	99239100	+	823.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145839, intron 4 of 13)	intron (NM_145839, intron 4 of 13)	14327.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16441491-2	chr7	16440991	16441991	+	823.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-11288.0	NM_026938	69094.0	Mm.29633	NM_026938	ENSMUSG00000019158	Tmem160	1810008O21Rik	transmembrane protein 160	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25579952-2	chr17	25579461	25580461	+	823.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045520, intron 1 of 8)	intron (NR_045520, intron 1 of 8)	787.0	NR_045520	76483.0	Mm.12787	NM_029624	ENSMUSG00000002279	Lmf1	2400010G15Rik|AW822050|Tmem112|cld	lipase maturation factor 1	protein-coding	1.5	0.0	6.5	0.0	1.5	3.0
Merged-chr16-34093947-2	chr16	34093447	34094447	+	823.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 34 of 59)	intron (NM_177357, intron 34 of 59)	-126909.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-73163403-2	chr6	73162903	73163903	+	823.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164669, intron 17 of 76)	intron (NM_001164669, intron 17 of 76)	58228.0	NM_001164669	330355.0	Mm.333166	NM_001164669	ENSMUSG00000052861	Dnah6	9830168K20|A730004I20Rik|Dnahc6|mKIAA1697|mdhc6	dynein, axonemal, heavy chain 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92736285-2	chr1	92735785	92736785	+	823.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87444.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-114775577-2	chr9	114775077	114776077	+	823.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252479, intron 1 of 3)	intron (NM_001252479, intron 1 of 3)	6416.0	NM_133978	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	3.5	2.5	10.5	1.5	2.5	7.0
Merged-chr9-104339188-3	chr9	104338675	104339675	+	823.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-1453.0	NM_207668	56318.0	Mm.19941	NM_019807	ENSMUSG00000032561	Acpp	5'-NT|A030005E02Rik|FRAP|Lap|PAP|Ppal	acid phosphatase, prostate	protein-coding	5.0	2.0	4.5	1.0	10.5	0.0
Merged-chr11-3519007-2	chr11	3518507	3519507	+	823.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001284427, intron 19 of 19)	intron (NM_001284427, intron 19 of 19)	4323.0	NM_053267	114679.0	Mm.34046	NM_053267	ENSMUSG00000075702	Selenom	1500040L08Rik|A230103K18|Selm|Sepm	selenoprotein M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-73808397-3	chr6	73807887	73808887	+	823.483337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-337366.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	0.5	4.0	0.0	0.5	4.0	0.5
Merged-chr2-160176314-4	chr2	160175871	160176871	+	823.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	151123.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22515332-5	chr11	22514923	22515923	+	823.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153596, intron 1 of 3)	intron (NM_153596, intron 1 of 3)	3140.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	8.0	5.5	11.0	7.0	11.0	11.5
Merged-chr4-33242691-4	chr4	33242203	33243203	+	823.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	6084.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-37430078-4	chr6	37429603	37430603	+	823.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	12045.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125596386-3	chr6	125595899	125596899	+	823.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 10 of 51)	CT-rich|Low_complexity|Low_complexity	43451.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-51888615-4	chr16	51888099	51889099	+	823.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98688.0	NR_153657	629091.0	Mm.364775	NR_153657		Gm29686	-	predicted gene, 29686	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84592214-4	chr8	84591704	84592704	+	823.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252060, intron 30 of 47)	LTR16C|LTR|ERVL	70648.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	8.0	8.0	2.0	15.5	10.5	4.0
Merged-chr2-10048094-4	chr2	10047618	10048618	+	823.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027748, intron 1 of 6)	CpG	491.0	NM_027748	209361.0	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10022554-6	chr19	10022039	10023039	+	823.4055179999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153790, intron 1 of 10)	intron (NR_153790, intron 1 of 10)	4345.0	NM_001347430	74760.0	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-123187124-3	chr10	123186594	123187594	+	823.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301628, intron 1 of 20)	intron (NM_001301628, intron 1 of 20)	9925.0	NM_027604	14479.0	Mm.244209	NM_027604	ENSMUSG00000020124	Usp15	4921514G19Rik|AI327321|E430033I05Rik|Gcap18	ubiquitin specific peptidase 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58014391-2	chr15	58013891	58014891	+	823.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	19903.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-33661284-3	chr8	33660807	33661807	+	823.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010344, intron 1 of 12)	RLTR21|LTR|ERVK	8069.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	73.0	90.5	75.5	5.0	16.0	5.0
Merged-chr6-85410878-3	chr6	85410389	85411389	+	823.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12997.0	NM_001007472	384452.0	Mm.347883	NM_001007472	ENSMUSG00000068302	Noto	Flh|MmNot|Not|tc	notochord homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-77049488-4	chr16	77048993	77049993	+	823.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 4 of 23)	intron (NM_013918, intron 4 of 23)	35424.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-5415619-4	chr5	5415133	5416133	+	823.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35382.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87717457-4	chr16	87716941	87717941	+	823.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 2 of 4)	L1MD2|LINE|L1	18487.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-12490633-3	chr4	12490129	12491129	+	823.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-318614.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30198843-4	chr7	30198311	30199311	+	823.354187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3658.0	NM_009795	12336.0	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|Cdps|Css1|D7Ertd146e	calpain, small subunit 1	protein-coding	0.5	17.0	4.5	0.0	1.0	0.5
Merged-chr8-123477323-2	chr8	123476823	123477823	+	823.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054070)	promoter-TSS (NM_054070)	-539.0	NM_054070	114896.0	Mm.287475	NM_054070	ENSMUSG00000031967	Afg3l1	1700047G05Rik|3110061K15Rik	AFG3-like AAA ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-67516106-2	chr1	67515606	67516606	+	823.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	393079.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80034480-2	chr15	80034020	80035020	+	823.333374	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19712.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	87.0	169.5	136.5	75.0	171.0	112.5
Merged-chr16-24507902-4	chr16	24507388	24508388	+	823.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 3 of 12)	intron (NM_178665, intron 3 of 12)	-21426.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79359014-3	chr12	79358510	79359510	+	823.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	61659.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-23189451-3	chr1	23188921	23189921	+	823.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82848.0	NR_029533	387225.0		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-33501243-3	chr6	33500760	33501760	+	823.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 9 of 17)	intron (NM_009148, intron 9 of 17)	252132.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-129877966-3	chr3	129877507	129878507	+	823.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023196)	promoter-TSS (NM_023196)	-599.0	NR_104611	66350.0	Mm.151951	NM_023196	ENSMUSG00000027999	Pla2g12a	2310004B05Rik|GXII|GXII-1|GXII-1-PLA2|Pla2g12|Rossy|mGXII-1	phospholipase A2, group XIIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19764841-3	chr7	19764356	19765356	+	823.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020486, intron 6 of 14)	intron (NM_020486, intron 6 of 14)	5676.0	NM_020486	57278.0	Mm.29236	NM_020486	ENSMUSG00000002980	Bcam	1200005K12Rik|B-CAM|Gplu|Lu	basal cell adhesion molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120579479-3	chr5	120578964	120579964	+	823.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145853, intron 2 of 27)	intron (NM_145853, intron 2 of 27)	9149.0	NM_145853	252972.0	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164834643-4	chr2	164834094	164835094	+	823.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001082974)	promoter-TSS (NM_001082974)	821.0	NM_008906	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	22.5	55.5	35.0	7.5	70.0	47.5
Merged-chr12-71309765-5	chr12	71309258	71310258	+	823.299988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021532)	promoter-TSS (NM_021532)	-126.0	NM_021532	59036.0	Mm.46662	NM_021532	ENSMUSG00000044548	Dact1	4921528D17Rik|AI115603|DAPPER|DAPPER1|FRODO|Frd1|Frodo1|MDpr1|MTNG3|THYEX3	dishevelled-binding antagonist of beta-catenin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-52338831-3	chr14	52338337	52339337	+	823.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10167.0	NM_015772	50524.0	Mm.39487	NM_015772	ENSMUSG00000049532	Sall2	AI225809|AW559097|Msal-2|Sal-2|mKIAA0360|p150(Sal2)	spalt like transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr7-19370192-3	chr7	19369671	19370671	+	823.266663	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001010836, exon 4 of 13)	exon (NM_001010836, exon 4 of 13)	8955.0	NM_001010836	333654.0	Mm.333640	NM_001010836	ENSMUSG00000040734	Ppp1r13l	AV260376|IASPP|Nkip1|wa3	protein phosphatase 1, regulatory (inhibitor) subunit 13 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152208198-2	chr3	152207698	152208698	+	823.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356363, intron 1 of 3)	PB1D9|SINE|Alu	1885.0	NM_001356363	67035.0	Mm.46746	NM_025926	ENSMUSG00000028035	Dnajb4	1700029A20Rik|2010306G19Rik|5730460G06Rik	DnaJ heat shock protein family (Hsp40) member B4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34830620-2	chr1	34830120	34831120	+	823.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160236, intron 2 of 6)	intron (NM_001160236, intron 2 of 6)	12430.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89868595-2	chr3	89868095	89869095	+	823.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310676)	TTS (NM_001310676)	37225.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118237330-4	chr11	118236820	118237820	+	823.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	11272.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-126713153-4	chr2	126712662	126713662	+	823.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019729, intron 1 of 18)	intron (NM_019729, intron 1 of 18)	5834.0	NM_019729	84092.0	Mm.272629	NM_019729	ENSMUSG00000027363	Usp8	AI574262|AW557536|Ubpy|mKIAA0055	ubiquitin specific peptidase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100676338-6	chr13	100675851	100676851	+	823.235718	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168386, intron 1 of 9)	intron (NM_001168386, intron 1 of 9)	6870.0	NM_001168386	76041.0	Mm.23977	NM_183115	ENSMUSG00000048924	Ccdc125	5830436D01Rik|AL023012	coiled-coil domain containing 125	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136971175-3	chr4	136970658	136971658	+	823.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14342.0	NM_007939	13842.0	Mm.1390	NM_007939	ENSMUSG00000028661	Epha8	AW047546|Eek|Hek3|mKIAA1459	Eph receptor A8	protein-coding	1.0	0.0	0.0	0.0	0.0	1.5
Merged-chr3-105020510-4	chr3	105019994	105020994	+	823.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 3 of 5)	intron (NM_030249, intron 3 of 5)	32459.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-99544102-3	chr6	99543593	99544593	+	823.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23100.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-24076257-3	chr11	24075768	24076768	+	823.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1788.0	NM_016707	14025.0	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-86880378-3	chr8	86879876	86880876	+	823.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	4882.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	12.0	10.5	5.5	8.0	10.5	13.0
Merged-chr9-58580986-4	chr9	58580454	58581454	+	823.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1286.0	NM_001293673	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-144317200-2	chr1	144316700	144317700	+	823.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-68096.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-124125204-2	chr9	124124704	124125704	+	823.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_009917, exon 2 of 2)	exon (NM_009917, exon 2 of 2)	3661.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-126658572-4	chr2	126658097	126659097	+	823.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355108, intron 1 of 7)	intron (NM_001355108, intron 1 of 7)	16755.0	NM_001355109	14391.0	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	0.0	0.5	3.0	0.0	0.0	2.0
Merged-chr6-31061704-2	chr6	31061204	31062204	+	823.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029744)	TTS (NR_029744)	1043.0	NR_029744	387222.0		NR_029744	ENSMUSG00000065610	Mir29a	Mirn29a|mir-29a|mmu-mir-29a	microRNA 29a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-124943249-2	chr4	124942749	124943749	+	823.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177573, exon 5 of 5)	3' UTR (NM_177573, exon 5 of 5)	6201.0	NM_001355603	194268.0	Mm.266907	NM_177573	ENSMUSG00000044730	9930104L06Rik	C1orf109	RIKEN cDNA 9930104L06 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35381974-2	chr17	35381474	35382474	+	823.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001143689, intron 3 of 5)	intron (NM_001143689, intron 3 of 5)	2357.0	NM_001143689	15015.0	Mm.464284	NM_001143689	ENSMUSG00000035929	H2-Q4	H-2Q4|H2-Gs10|Qa-4|Qa4|Qat-4|Qb-1|Qb1	histocompatibility 2, Q region locus 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153802716-5	chr1	153802242	153803242	+	823.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243223, intron 13 of 20)	intron (NM_001243223, intron 13 of 20)	41399.0	NM_001243223	240816.0	Mm.329340	NM_001243223	ENSMUSG00000042641	Rgsl1	4930415K13Rik|Gm202|Rgsl2	regulator of G-protein signaling like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53318158-3	chr15	53317657	53318657	+	823.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	28026.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119445969-4	chr9	119445478	119446478	+	823.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153321, intron 3 of 7)	intron (NR_153321, intron 3 of 7)	1018.0	NR_153319	208194.0	Mm.101578	NM_172456	ENSMUSG00000042787	Exog	AW557704|ENGL-B|ENGL-a|Endogl1|Endogl2|Engl|Engla|Englb	endo/exonuclease (5'-3'), endonuclease G-like	protein-coding	0.0	0.5	2.0	1.5	0.0	0.5
Merged-chr9-96167395-4	chr9	96166876	96167876	+	823.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177352, intron 11 of 16)	intron (NM_177352, intron 11 of 16)	-28899.0	NM_001184706	211586.0	Mm.17977	NM_178667	ENSMUSG00000032411	Tfdp2	1110029I05Rik|A330080J22Rik|DP-3|DP3	transcription factor Dp 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-28073134-3	chr5	28072477	28073477	+	823.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153526, intron 1 of 4)	intron (NM_153526, intron 1 of 4)	1565.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130025996-3	chr5	130025516	130026516	+	823.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1635.0	NM_133768	109900.0	Mm.23869	NM_133768	ENSMUSG00000025533	Asl	2510006M18Rik|ASAL	argininosuccinate lyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85470172-2	chr12	85469672	85470672	+	823.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA7|LINE|L1	-3718.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85781853-4	chr12	85781355	85782355	+	823.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145447, intron 1 of 9)	intron (NM_145447, intron 1 of 9)	35316.0	NM_145447	217721.0	Mm.301076	NM_145447	ENSMUSG00000034258	Flvcr2	CCT|Mfsd7c	feline leukemia virus subgroup C cellular receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27911919-4	chr17	27911429	27912429	+	823.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	2623.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	23.5	49.0	49.0	48.0	99.0	75.5
Merged-chr6-46376522-4	chr6	46376026	46377026	+	823.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004357, intron 11 of 23)	intron (NM_001004357, intron 11 of 23)	-867870.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140751420-5	chr5	140750964	140751964	+	823.07666	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 7 of 7)	B1_Mus2|SINE|Alu	27337.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39726392-3	chr6	39725910	39726910	+	823.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139294)	promoter-TSS (NM_139294)	-947.0	NM_139294	109880.0	Mm.245513	NM_139294	ENSMUSG00000002413	Braf	9930012E13Rik|AA120551|AA387315|AA473386|B-raf|Braf-2|Braf2|C230098H17|C87398|D6Ertd631e	Braf transforming gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60874144-4	chr2	60873677	60874677	+	823.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	MTD|LTR|ERVL-MaLR	7261.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39835017-4	chr1	39834537	39835537	+	823.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12293.0	NR_040465	73426.0	Mm.396239	NR_040465	ENSMUSG00000101634	1700066B17Rik	-	RIKEN cDNA 1700066B17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-85874182-6	chr10	85873685	85874685	+	823.027771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133993, intron 1 of 14)	intron (NM_133993, intron 1 of 14)	2354.0	NM_133993	103136.0	Mm.18834	NM_133993	ENSMUSG00000001785	Pwp1	2310058A11Rik|2610205J09Rik|AI098170|AL022879|AV083409|AW550690	PWP1 homolog, endonuclein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-85286602-3	chr16	85286116	85287116	+	823.027771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112909.0	NM_001198826	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	19.0	35.0	12.5	4.5	29.5	9.0
Merged-chr10-68397163-3	chr10	68396719	68397719	+	823.023804	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76077.0	NR_045357	75148.0	Mm.23505	NR_045357	ENSMUSG00000112157	4930545H06Rik	-	RIKEN cDNA 4930545H06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109264711-1	chr3	109264211	109265211	+	823.0	f0_balb.idr	Intergenic	Intergenic	-75972.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	6.5	1.5	4.5	6.5	16.0	6.0
Merged-chr3-41260240-1	chr3	41259740	41260740	+	823.0	f0_balb.idr	Intergenic	Intergenic	-177194.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	2.5	0.0	0.0	0.0	0.0	1.0
Merged-chr4-117130390-2	chr4	117129901	117130901	+	823.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013807, exon 12 of 15)	exon (NM_013807, exon 12 of 15)	3562.0	NM_013807	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	0.0	3.0	7.5	0.0	0.0	0.0
Merged-chr3-8770908-1	chr3	8770408	8771408	+	823.0	f0_balb.idr	Intergenic	Intergenic	-103870.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	2.0	0.0	2.0	0.0	0.0	4.0
Merged-chr9-108844646-2	chr9	108844146	108845146	+	823.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359573, intron 28 of 35)	intron (NM_001359573, intron 28 of 35)	-9397.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	0.0	1.0	0.0	0.0	0.0	0.5
Merged-chr17-35112827-1	chr17	35112327	35113327	+	823.0	f1_balb.idr	TTS (NM_148947)	TTS (NM_148947)	2573.0	NM_148939	266614.0	Mm.104680	NM_148939	ENSMUSG00000043807	Ly6g5b	-	lymphocyte antigen 6 complex, locus G5B	protein-coding	5.5	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134055698-2	chr6	134055198	134056198	+	823.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	19998.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	2.0	1.0	1.0	0.0	0.0	0.0
Merged-chr10-121508166-2	chr10	121507666	121508666	+	823.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-31916.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0.0	0.5	1.5	0.0	0.5	1.5
Merged-chr19-34444929-3	chr19	34444483	34445483	+	823.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	30152.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128729443-2	chr4	128728943	128729943	+	823.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195083, intron 1 of 6)	intron (NM_001195083, intron 1 of 6)	1872.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	15.0	66.0	53.5	17.5	47.0	52.0
Merged-chr12-85383577-2	chr12	85383077	85384077	+	823.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8860.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133009148-2	chr4	133008648	133009648	+	823.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2358.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100632091-2	chr15	100631591	100632591	+	823.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033872, intron 2 of 3)	intron (NM_001033872, intron 2 of 3)	3468.0	NM_001285414	207818.0	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60200462-2	chr11	60199962	60200962	+	823.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105886)	TTS (NR_105886)	155.0	NR_105886	102465555.0		NR_105886	ENSMUSG00000098547	Mir6921	Gm27352|mmu-mir-6921	microRNA 6921	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145361301-4	chr4	145360805	145361805	+	823.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_1B-LTR_MM|LTR|ERVK	-46158.0	NM_009401	21941.0	Mm.12810	NM_009401	ENSMUSG00000028602	Tnfrsf8	Cd30|D1S166E|Ki|Ki-1	tumor necrosis factor receptor superfamily, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135942896-2	chr4	135942396	135943396	+	823.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-3552.0	NM_008254	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97656948-2	chr3	97656448	97657448	+	823.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-1264.0	NM_182997	108097.0	Mm.31175	NM_182997	ENSMUSG00000038205	Prkab2	5730553K21Rik|AW049591|BB124140	protein kinase, AMP-activated, beta 2 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-113471232-2	chr11	113470732	113471732	+	823.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027216, intron 4 of 9)	intron (NM_027216, intron 4 of 9)	94583.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148173448-2	chr4	148172948	148173948	+	823.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12780.0	NM_176848	230904.0	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	0.0	1.0	4.0	0.0	4.5	0.5
Merged-chr11-69855482-2	chr11	69854982	69855982	+	823.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031880, intron 7 of 13)	intron (NM_031880, intron 7 of 13)	3248.0	NM_031880	83813.0	Mm.28874	NM_031880	ENSMUSG00000001583	Tnk1	Kos1|Tnk1a|Tnk1b	tyrosine kinase, non-receptor, 1	protein-coding	0.0	4.0	0.0	0.5	1.0	0.0
Merged-chr15-35150475-4	chr15	35149960	35150960	+	823.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357821, intron 1 of 11)	Lx7|LINE|L1	5346.0	NM_001357821	56274.0	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-31297863-1	chr8	31297363	31298363	+	823.0	f1_balb.idr	Intergenic	Intergenic	-69886.0	NR_046272	74517.0	Mm.390001	NR_046272	ENSMUSG00000109915	7420700N18Rik	-	RIKEN cDNA 7420700N18 gene	ncRNA	0.0	7.0	5.0	16.0	0.0	1.0
Merged-chr7-31030169-2	chr7	31029669	31030669	+	823.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B2|LTR|ERVL	10148.0	NR_106017	102465635.0		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-70586772-1	chr16	70586272	70587272	+	823.0	f0_balb.idr	Intergenic	Tigger6a|DNA|TcMar-Tigger	-29653.0	NR_040474	52645.0	Mm.188475	NR_040474		D16Ertd519e	-	DNA segment, Chr 16, ERATO Doi 519, expressed	ncRNA	0.0	1.0	0.5	2.5	1.0	2.0
Merged-chr1-134562616-2	chr1	134562116	134563116	+	823.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_152895, intron 1 of 26)	intron (NM_152895, intron 1 of 26)	2438.0	NM_152895	75605.0	Mm.28995	NM_152895	ENSMUSG00000042207	Kdm5b	2010009J12Rik|2210016I17Rik|AW556288|D1Ertd202e|Jarid1b|PLU-1|PUT1|Plu1|RBBP2H1A|Rb-Bp2|mKIAA4034	lysine (K)-specific demethylase 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29465158-2	chr19	29464658	29465658	+	823.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	RMER1A|Other|Other	54239.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65582898-2	chr9	65582399	65583399	+	823.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2812.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.0	7.5	3.5	4.0	0.0	0.0
Merged-chr3-60517704-1	chr3	60517204	60518204	+	823.0	f1_balb.idr	intron (NM_001253711, intron 1 of 7)	C-rich|Low_complexity|Low_complexity	16525.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	13.5	21.0	20.5	11.0	30.0	12.0
Merged-chr15-13370900-1	chr15	13370400	13371400	+	823.0	f0_balb.idr	Intergenic	Intergenic	-197225.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-32338563-2	chr6	32338063	32339063	+	823.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-172578.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-140983039-2	chr4	140982539	140983539	+	823.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-3834.0	NM_029097	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167008501-2	chr2	167008001	167009001	+	823.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6812.0	NM_153065	228889.0	Mm.295031	NM_153065	ENSMUSG00000017999	Ddx27	C86129	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8802497-2	chr4	8801997	8802997	+	823.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 3 of 36)	intron (NM_001355382, intron 3 of 36)	51173.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	3.0	12.5	12.5	10.0	16.0	7.5
Merged-chr4-109983791-2	chr4	109983291	109984291	+	823.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172296)	TTS (NM_172296)	5766.0	NM_172296	242620.0	Mm.32825	NM_172296	ENSMUSG00000047143	Dmrta2	Dmrt5	doublesex and mab-3 related transcription factor like family A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80059988-2	chr15	80059415	80060415	+	823.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18664.0	NR_028282	100302601.0		NR_028282	ENSMUSG00000077734	Snord83b	MBII-10	small nucleolar RNA, C/D box 83B	snoRNA	0.0	5.0	0.5	0.0	12.0	10.0
Merged-chr2-73271883-2	chr2	73271383	73272383	+	823.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005343)	promoter-TSS (NM_001005343)	-43.0	NM_001005343	381373.0	Mm.330293	NM_001005343	ENSMUSG00000068859	Sp9	-	trans-acting transcription factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-94305529-2	chr17	94305029	94306029	+	823.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	444490.0	NM_001357136	76781.0	Mm.139146	NM_176917	ENSMUSG00000055660	Mettl4	2410198H06Rik|A730091E08Rik|AV296509|HsT661	methyltransferase like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97747193-2	chr7	97746799	97747799	+	823.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9052.0	NM_175105	66333.0	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	2.5	2.0	0.0	5.5	1.5	2.0
Merged-chr7-120822242-2	chr7	120821742	120822742	+	823.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20589.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-21593943-1	chr18	21593443	21594443	+	823.0	f0_balb.idr	intron (NM_001081403, intron 2 of 7)	intron (NM_001081403, intron 2 of 7)	-57622.0	NM_001271580	74644.0	Mm.329311	NM_001271580		4930426D05Rik	-	RIKEN cDNA 4930426D05 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-8481909-2	chr16	8481409	8482409	+	823.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146247, intron 3 of 10)	(CTCTG)n|Simple_repeat|Simple_repeat	11096.0	NM_146247	239706.0	Mm.214953	NM_146247	ENSMUSG00000039345	Mettl22	-	methyltransferase like 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-44919092-4	chr12	44918600	44919600	+	822.983337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144552, intron 2 of 5)	MLT2B2|LTR|ERVL	155383.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	1.5	0.0	5.0	1.5	1.0	0.0
Merged-chr4-55534645-4	chr4	55534138	55535138	+	822.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2163.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	3.0	15.0	8.0	2.0	6.5	6.0
Merged-chr1-88239677-3	chr1	88239180	88240180	+	822.977783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 15 of 41)	intron (NM_001281466, intron 15 of 41)	12660.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87804929-4	chr6	87804426	87805426	+	822.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104478, intron 1 of 2)	intron (NR_104478, intron 1 of 2)	4831.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-85618959-3	chr4	85618495	85619495	+	822.93335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	413539.0	NM_019535	20404.0	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding	3.5	0.0	4.5	1.5	0.0	0.0
Merged-chr10-67062051-2	chr10	67061551	67062551	+	822.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	34937.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5456587-2	chr19	5456016	5457016	+	822.916626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010235)	TTS (NM_010235)	1047.0	NM_198616	240514.0	Mm.329657	NM_198616	ENSMUSG00000095098	Ccdc85b	AI842788|BB115872	coiled-coil domain containing 85B	protein-coding	4.0	0.0	0.5	0.0	0.0	2.5
Merged-chr12-113152721-2	chr12	113152313	113153313	+	822.916626	f0_balb.idr|f1_balb.idr	intron (NM_007763, intron 1 of 4)	intron (NM_007763, intron 1 of 4)	801.0	NM_007763	12925.0	Mm.272368	NM_007763	ENSMUSG00000006360	Crip1	CRHP|CRP1|Crip	cysteine-rich protein 1 (intestinal)	protein-coding	23.5	25.5	38.0	18.0	39.5	26.5
Merged-chr15-58701673-4	chr15	58701183	58702183	+	822.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121744.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-130690918-4	chr3	130690379	130691379	+	822.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	18565.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-177702482-5	chr1	177701979	177702979	+	822.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27335.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106663876-3	chr11	106663389	106664389	+	822.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 13 of 14)	intron (NM_001305158, intron 13 of 14)	-50959.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128318481-3	chr6	128317976	128318976	+	822.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17663.0	NM_011567	21679.0	Mm.14774	NM_011567	ENSMUSG00000030353	Tead4	ETFR-2|Etfr2|FR-19|Rtef1|TEAD-4|TEF-3|Tcf13r1|Tef3|Tefr|Tefr1|Tefr1a	TEA domain family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-97885740-3	chr4	97885246	97886246	+	822.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	108120.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117577189-3	chr8	117576665	117577665	+	822.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 9 of 32)	ORR1E|LTR|ERVL-MaLR	78890.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-82935183-4	chr10	82934683	82935683	+	822.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50314.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	0.0	0.0	0.0	0.0	2.5	0.0
Merged-chr2-129898330-4	chr2	129897836	129898836	+	822.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-96877.0	NR_029452	654409.0	Mm.305555	NR_029452		Stk35os1	4932416H05Rik	serine/threonine kinase 35, opposite strand 1	ncRNA	5.5	9.0	12.5	26.5	11.0	25.0
Merged-chr11-115358817-2	chr11	115358317	115359317	+	822.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_175454, intron 5 of 18)	intron (NM_175454, intron 5 of 18)	8902.0	NM_175454	217310.0	Mm.205707	NM_175454	ENSMUSG00000034586	Hid1	C630004H02Rik	HID1 domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27852500-2	chr17	27852000	27853000	+	822.875	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011432)	TTS (NM_011432)	-4007.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	9.5	17.5	5.5	3.5	0.5	0.5
Merged-chr10-66928781-4	chr10	66928271	66929271	+	822.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8387.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141478257-2	chr7	141477757	141478757	+	822.857178	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252588, intron 1 of 7)	intron (NM_001252588, intron 1 of 7)	1877.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25497390-2	chr2	25496890	25497890	+	822.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3116.0	NM_027062	69379.0	Mm.24596	NM_027062	ENSMUSG00000015083	C8g	-	complement component 8, gamma polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120740179-2	chr8	120739679	120740679	+	822.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301811, intron 2 of 8)	intron (NM_001301811, intron 2 of 8)	1540.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17787899-2	chr6	17787399	17788399	+	822.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	L2b|LINE|L2	38729.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79918243-2	chr10	79917743	79918743	+	822.833374	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_053244, exon 1 of 5)	5' UTR (NM_053244, exon 1 of 5)	1272.0	NM_053244	114229.0	Mm.191035	NM_053244	ENSMUSG00000035773	Kiss1r	Gpr54|KiSS-1|kiSS-1R	KISS1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155447480-2	chr1	155446980	155447980	+	822.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30036.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165915861-2	chr2	165915383	165916383	+	822.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-31045.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64397598-3	chr17	64397088	64398088	+	822.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43218.0	NR_105848	102465228.0		NR_105848	ENSMUSG00000098984	Mir6420	Gm28007|mmu-mir-6420	microRNA 6420	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100474844-4	chr7	100474321	100475321	+	822.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009464, intron 1 of 6)	intron (NM_009464, intron 1 of 6)	1830.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	4.5	2.5	9.0	4.0	1.5	2.5
Merged-chr2-128700924-3	chr2	128700426	128701426	+	822.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	2011.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	15.0	21.0	19.5	16.5	23.0	29.5
Merged-chr12-85534456-6	chr12	85533955	85534955	+	822.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60565.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52283630-4	chr13	52283094	52284094	+	822.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	186853.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-104789887-4	chr13	104789386	104790386	+	822.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360094, intron 10 of 13)	intron (NM_001360094, intron 10 of 13)	27067.0	NM_026072	67285.0	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97107031-4	chr6	97106554	97107554	+	822.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41829.0	NM_175313	101351.0	Mm.116802	NM_175313	ENSMUSG00000035245	Eogt	A130022J15Rik|AI447490|AW214473|AW259391|Aer61	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding	1.5	5.5	20.5	6.0	3.0	0.5
Merged-chr11-89090738-4	chr11	89090298	89091298	+	822.791687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033266, intron 3 of 3)	B2_Mm2|SINE|B2	16957.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	11.5	51.5	22.5	0.0	0.0	0.0
Merged-chr13-22040428-3	chr13	22039927	22040927	+	822.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175656)	TTS (NM_175656)	935.0	NM_175656	319158.0	Mm.14775	NM_175656	ENSMUSG00000060639	Hist1h4i	-	histone cluster 1, H4i	protein-coding	17.0	36.5	22.0	15.0	34.0	19.0
Merged-chr15-73069060-3	chr15	73068503	73069503	+	822.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7799.0	NM_001164643	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	4.5	4.5	5.0	9.5	5.0	7.0
Merged-chr1-85122030-3	chr1	85121532	85122532	+	822.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	-12179.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88128833-2	chr17	88128333	88129333	+	822.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190356, intron 1 of 1)	intron (NM_001190356, intron 1 of 1)	3321.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96098315-4	chr3	96097826	96098826	+	822.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6201.0	NM_001025613	229603.0	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	6.5	0.0	5.5	3.5	7.5	4.5
Merged-chr2-168119322-2	chr2	168118822	168119822	+	822.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35191.0	NR_040327	77017.0	Mm.407822	NR_040327	ENSMUSG00000087648	E130018N17Rik	-	RIKEN cDNA E130018N17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53315735-2	chr19	53315235	53316235	+	822.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	MIRc|SINE|MIR	4290.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115709389-4	chr11	115708840	115709840	+	822.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008163)	promoter-TSS (NM_008163)	-743.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73507826-4	chr14	73507363	73508363	+	822.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2186.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141599954-2	chr4	141599450	141600450	+	822.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163256)	promoter-TSS (NM_001163256)	-26.0	NM_001163256	74202.0	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	0.0	0.0	1.0	0.0	4.0	4.5
Merged-chr12-73765314-3	chr12	73764805	73765805	+	822.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 12 of 13)	intron (NM_008856, intron 12 of 13)	-136019.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63757159-5	chr9	63756720	63757720	+	822.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	CpG	774.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4210172-5	chr12	4209672	4210672	+	822.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 17 of 21)	intron (NM_001159537, intron 17 of 21)	23793.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56897870-3	chr17	56897366	56898366	+	822.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022328, intron 6 of 11)	intron (NM_022328, intron 6 of 11)	22233.0	NM_030141	78625.0	Mm.160106	NM_030141	ENSMUSG00000024209	1700061G19Rik	1700026H02|AI507598	RIKEN cDNA 1700061G19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61843647-3	chr11	61843136	61844136	+	822.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013881, intron 3 of 26)	intron (NM_013881, intron 3 of 26)	11456.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74469195-3	chr11	74468684	74469684	+	822.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 3 of 24)	ID_B1|SINE|B4	104513.0	NM_001011851	258153.0	Mm.376124	NM_001011851	ENSMUSG00000058275	Olfr412	MOR127-5P	olfactory receptor 412	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8846375-3	chr10	8845851	8846851	+	822.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	39719.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	9.0	8.5	12.5	14.0	12.0	6.0
Merged-chr6-137404422-3	chr6	137403909	137404909	+	822.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 12 of 26)	intron (NM_011216, intron 12 of 26)	-6312.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-57331436-4	chr2	57330948	57331948	+	822.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010274, intron 6 of 16)	RSINE1|SINE|B4	93066.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-64976130-4	chr12	64975605	64976605	+	822.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177805, intron 1 of 19)	intron (NM_177805, intron 1 of 19)	10363.0	NM_177805	328108.0	Mm.138465	NM_177805	ENSMUSG00000035614	Togaram1	A430041B07Rik|BC062107|C130034K06|Fam179b|mKIAA0423	TOG array regulator of axonemal microtubules 1	protein-coding	12.5	9.5	6.0	3.0	8.5	2.5
Merged-chr2-25181769-2	chr2	25181269	25182269	+	822.6999509999999	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025980, exon 1 of 1)	3' UTR (NM_025980, exon 1 of 1)	1011.0	NM_025980	67122.0	Mm.46539	NM_025980	ENSMUSG00000078202	Nrarp	2700054M22Rik	Notch-regulated ankyrin repeat protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-88547411-4	chr9	88546918	88547918	+	822.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142943)	promoter-TSS (NM_001142943)	-602.0	NM_001163061	71640.0	Mm.259988	NM_001142943	ENSMUSG00000032425	Zfp949	4930422I07Rik|Nczf	zinc finger protein 949	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90077035-4	chr9	90076558	90077558	+	822.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007801)	TTS (NM_007801)	22791.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29246799-3	chr17	29246293	29247293	+	822.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9003.0	NM_001360239	240058.0	Mm.39905	NM_153166	ENSMUSG00000024008	Cpne5	A830083G22Rik	copine V	protein-coding	0.0	3.0	7.5	2.5	1.5	4.5
Merged-chr2-104574277-3	chr2	104573778	104574778	+	822.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	14819.0	NR_040323	74959.0	Mm.417819	NR_040322	ENSMUSG00000086454	Platr14	4930500J02Rik	pluripotency associated transcript 14	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50415531-3	chr16	50415013	50416013	+	822.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 2 of 16)	intron (NM_027444, intron 2 of 16)	16876.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-150611835-4	chr5	150611328	150612328	+	822.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362416, intron 6 of 7)	L3|LINE|CR1	-17303.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-3231829-3	chr16	3231364	3232364	+	822.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CTGTG)n|Simple_repeat|Simple_repeat	-360534.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121934648-3	chr8	121934168	121935168	+	822.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007608, intron 2 of 6)	intron (NM_007608, intron 2 of 6)	10244.0	NM_007608	12352.0	Mm.116761	NM_007608	ENSMUSG00000025317	Car5a	CAV|Ca5a|Car5	carbonic anhydrase 5a, mitochondrial	protein-coding	3.5	5.0	0.0	1.5	1.0	1.5
Merged-chr19-3374711-2	chr19	3374211	3375211	+	822.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 12 of 18)	intron (NM_013495, intron 12 of 18)	-14146.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	2.5	11.5	1.0	0.5	0.0	1.5
Merged-chr16-91062479-2	chr16	91061979	91062979	+	822.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028905, intron 1 of 2)	intron (NM_028905, intron 1 of 2)	6666.0	NM_001163695	74387.0	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44359500-2	chr7	44359000	44360000	+	822.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027049)	TTS (NM_027049)	15530.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21143724-2	chr14	21143224	21144224	+	822.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_134079, intron 3 of 10)	intron (NM_134079, intron 3 of 10)	67572.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81221921-2	chr10	81221421	81222421	+	822.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_178662, intron 2 of 12)	intron (NM_178662, intron 2 of 12)	8858.0	NM_178662	16467.0	Mm.127681	NM_178662	ENSMUSG00000034958	Atcay	3322401A10Rik|BB077577|BNIP-H|CLAC|hes|ji	ataxia, cerebellar, Cayman type	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-129585268-2	chr5	129584768	129585768	+	822.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011846, intron 1 of 9)	CpG	1099.0	NM_011846	23948.0	Mm.42047	NM_011846	ENSMUSG00000029436	Mmp17	MT4-MMP|MT4MMP|MTMMP4	matrix metallopeptidase 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4887470-2	chr16	4886970	4887970	+	822.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 1 of 17)	PB1D10|SINE|Alu	1370.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8345045-3	chr12	8344534	8345534	+	822.638855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31601.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	13.0	17.0	24.0	41.0	11.5	39.0
Merged-chr4-74305406-4	chr4	74304877	74305877	+	822.62915	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356561, intron 4 of 20)	B1_Mus1|SINE|Alu	53498.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21091429-4	chr5	21090943	21091943	+	822.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35532.0	NM_011203	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-57681922-3	chr11	57681382	57682382	+	822.622253	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134189, intron 1 of 11)	intron (NM_134189, intron 1 of 11)	-32388.0	NR_153850	78762.0	Mm.362149	NR_153850		4933424L21Rik	-	RIKEN cDNA 4933424L21 gene	ncRNA	17.5	26.0	19.5	44.5	53.0	61.0
Merged-chr2-3427785-3	chr2	3427328	3428328	+	822.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302674, intron 2 of 13)	intron (NM_001302674, intron 2 of 13)	3697.0	NM_001302684	227525.0	Mm.23483	NM_146114	ENSMUSG00000026648	Dclre1c	9930121L06Rik|AI661365|Art|Snm1l	DNA cross-link repair 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101177178-2	chr11	101176678	101177678	+	822.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_016782, intron 1 of 23)	intron (NM_016782, intron 1 of 23)	1061.0	NM_016782	53321.0	Mm.474527	NM_016782	ENSMUSG00000017167	Cntnap1	AI841080|Caspr|NCP1|Nrxn4|p190|shm	contactin associated protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58075480-4	chr15	58074992	58075992	+	822.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009572, intron 1 of 3)	intron (NM_009572, intron 1 of 3)	1016.0	NM_001042438	22770.0	Mm.244931	NM_009572	ENSMUSG00000022361	Zhx1	-	zinc fingers and homeoboxes 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46143643-4	chr8	46143176	46144176	+	822.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19530.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90013473-4	chr9	90012976	90013976	+	822.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357743, intron 23 of 26)	intron (NM_001357743, intron 23 of 26)	-40791.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-148352675-3	chr6	148352123	148353123	+	822.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198967, intron 5 of 19)	intron (NM_198967, intron 5 of 19)	-2033.0	NR_003634	66184.0	Mm.391542	NM_025405	ENSMUSG00000063171	Rps4l	1110033J19Rik|AA407494|Rps4y2	ribosomal protein S4-like	pseudo	8.0	4.0	3.0	9.5	14.5	11.0
Merged-chr10-13016743-4	chr10	13016245	13017245	+	822.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8295.0	NM_175102	66125.0	Mm.29743	NM_175102	ENSMUSG00000078348	Sf3b5	10kDa|1110005L13Rik|AU043053|Sf3b10	splicing factor 3b, subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-28243242-4	chr5	28242745	28243745	+	822.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310512, intron 1 of 3)	intron (NM_001310512, intron 1 of 3)	2543.0	NM_001310512	269637.0	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34165296-4	chr17	34164841	34165841	+	822.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	12150.0	NM_010387	14999.0	Mm.460938	NM_010387	ENSMUSG00000079547	H2-DMb1	AI385589|H-2Mb1|H2-Mb1	histocompatibility 2, class II, locus Mb1	protein-coding	16.0	11.5	14.5	19.5	32.5	17.0
Merged-chr6-49217775-2	chr6	49217275	49218275	+	822.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2821.0	NM_023670	140488.0	Mm.281018	NM_023670	ENSMUSG00000029814	Igf2bp3	2610101N11Rik|AA522010|AL022933|AU045931|IMP-3|IMP3|Koc13|Neilsen|mimp3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding	0.0	0.0	4.5	0.0	0.0	0.0
Merged-chr5-67875378-2	chr5	67874878	67875878	+	822.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	-27947.0	NM_001038999	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-63378140-2	chr10	63377640	63378640	+	822.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4303.0	NM_001253685	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-92610056-4	chr13	92609488	92610488	+	822.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1150.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-40746291-2	chr18	40745791	40746791	+	822.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	487930.0	NM_026135	383348.0	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30470315-2	chr2	30469815	30470815	+	822.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	3884.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145588166-3	chr2	145587667	145588667	+	822.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053195, intron 7 of 16)	intron (NM_053195, intron 7 of 16)	-33185.0	NM_001037929	627302.0	Mm.445953	NM_001037929		Gm14092	-	predicted gene 14092	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3287939-2	chr11	3287439	3288439	+	822.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_037301, intron 1 of 1)	intron (NR_037301, intron 1 of 1)	-1192.0	NR_045108	56218.0	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99210088-2	chr5	99209588	99210588	+	822.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	42839.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54239243-2	chr14	54238739	54239739	+	822.5	f0_balb.idr|f1_balb.idr	TTS (NM_010015)	TTS (NM_010015)	14690.0	NM_001113358	13135.0	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	4.0	9.5	6.0	2.0	0.0	0.5
Merged-chr5-103629174-2	chr5	103628674	103629674	+	822.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029415, exon 1 of 6)	exon (NM_029415, exon 1 of 6)	229.0	NM_029415	75750.0	Mm.7446	NM_029415	ENSMUSG00000029321	Slc10a6	8430417G17Rik|C78479|Soat	solute carrier family 10 (sodium/bile acid cotransporter family), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17147737-2	chr16	17147237	17148237	+	822.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001306169)	promoter-TSS (NM_001306169)	-508.0	NM_001306169	76872.0	Mm.101656	NM_029779	ENSMUSG00000022768	Ccdc116	4930432J16Rik	coiled-coil domain containing 116	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-133986238-1	chr6	133985738	133986738	+	822.5	f1_balb.idr	Intergenic	Intergenic	-49462.0	NM_001303102	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.0	0.5	10.5	0.0	8.0	0.5
Merged-chr10-66850465-2	chr10	66849965	66850965	+	822.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	69919.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26342070-2	chr2	26341570	26342570	+	822.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355575, intron 11 of 13)	intron (NM_001355575, intron 11 of 13)	10040.0	NM_026828	52838.0	Mm.31239	NM_026828	ENSMUSG00000075467	Dnlz	1110034G11Rik|D2Bwg1335e|HEP1	DNL-type zinc finger	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47375214-4	chr14	47374736	47375736	+	822.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145953, intron 1 of 5)	ORR1A2|LTR|ERVL-MaLR	1376.0	NM_001145953	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	70.5	274.5	151.5	99.5	253.0	181.5
Merged-chr15-84805780-2	chr15	84805280	84806280	+	822.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356573, intron 3 of 12)	intron (NM_001356573, intron 3 of 12)	49319.0	NM_001356573	271305.0	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	0.0	0.0	0.0	2.0	0.0	1.0
Merged-chr19-5734845-2	chr19	5734424	5735424	+	822.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3192.0	NM_020491	56390.0	Mm.455818	NM_020491	ENSMUSG00000079478	Sssca1	1500016H19Rik|C184L	Sjogren syndrome/scleroderma autoantigen 1	protein-coding	0.0	5.0	5.5	2.5	0.0	0.0
Merged-chr7-27452140-2	chr7	27451733	27452733	+	822.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290525)	promoter-TSS (NM_001290525)	-185.0	NM_001290525	233016.0	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	10.0	18.0	12.0	12.0	16.5	14.5
Merged-chr4-155735478-2	chr4	155734978	155735978	+	822.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001101506, exon 2 of 4)	exon (NM_001101506, exon 2 of 4)	674.0	NM_001101506	381582.0	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	6.5	14.0	1.5	3.0	9.0	4.5
Merged-chr4-155064260-2	chr4	155063760	155064760	+	822.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2770.0	NM_001042407	668173.0	Mm.133114	NM_001042407	ENSMUSG00000029047	Pex10	AV128229|Gm142	peroxisomal biogenesis factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-41192554-2	chr6	41192054	41193054	+	822.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-109718.0	NM_011646	22074.0	Mm.383263	NM_011646	ENSMUSG00000054106	Try4	0910001B19Rik|Td	trypsin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-111058753-2	chr2	111058253	111059253	+	822.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108509.0	NM_001355245	228432.0	Mm.483325	NM_001081556	ENSMUSG00000074968	Ano3	AI838058|B230324K02Rik|Tmem16c	anoctamin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86856119-2	chr4	86855619	86856619	+	822.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009096, intron 3 of 4)	intron (NM_009096, intron 3 of 4)	1248.0	NM_009096	20104.0	Mm.379007	NM_009096	ENSMUSG00000028495	Rps6	S6R	ribosomal protein S6	protein-coding	4.0	15.5	9.0	3.5	6.5	12.0
Merged-chr14-120323214-4	chr14	120322642	120323642	+	822.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 1 of 8)	intron (NM_001360376, intron 1 of 8)	16690.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20897364-2	chr11	20896864	20897864	+	822.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66256.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46334221-2	chr19	46333721	46334721	+	822.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164291, intron 1 of 8)	intron (NM_001164291, intron 1 of 8)	4439.0	NM_001164294	67116.0	Mm.218848	NM_024192	ENSMUSG00000036748	Cuedc2	3010002G01Rik	CUE domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24888443-2	chr7	24887943	24888943	+	822.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001360119, exon 4 of 6)	exon (NM_001360119, exon 4 of 6)	3530.0	NM_001360115	20085.0	Mm.300281	NM_023133	ENSMUSG00000040952	Rps19	Dsk3	ribosomal protein S19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80789921-2	chr17	80789421	80790421	+	822.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61896.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-16960612-3	chr10	16960111	16961111	+	822.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038020, intron 5 of 8)	L1MCa|LINE|L1	135171.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-103752492-2	chr5	103751992	103752992	+	822.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1670.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6523852-4	chr11	6523369	6524369	+	822.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-2911.0	NM_178440	246177.0	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	2.0	7.0	0.5	1.0	5.5	3.5
Merged-chr4-155221964-8	chr4	155221536	155222536	+	822.473206	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011385, exon 1 of 7)	exon (NM_011385, exon 1 of 7)	499.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	3.0	31.5	4.5	9.5	21.5	4.5
Merged-chr17-47715371-4	chr17	47715129	47716129	+	822.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11213.0	NM_025973	109820.0	Mm.22957	NM_025973	ENSMUSG00000023987	Pgc	2210410L06Rik|Upg-1|Upg1	progastricsin (pepsinogen C)	protein-coding	6.0	1.5	3.5	0.0	4.5	5.0
Merged-chr11-107639806-3	chr11	107639296	107640296	+	822.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198298, intron 20 of 31)	Lx9|LINE|L1	2074.0	NR_105897	102465562.0		NR_105897	ENSMUSG00000098497	Mir6932	Gm27691|mmu-mir-6932	microRNA 6932	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97666365-3	chr3	97665858	97666858	+	822.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182997, intron 5 of 7)	intron (NM_182997, intron 5 of 7)	8146.0	NM_182997	108097.0	Mm.31175	NM_182997	ENSMUSG00000038205	Prkab2	5730553K21Rik|AW049591|BB124140	protein kinase, AMP-activated, beta 2 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-85556313-3	chr13	85555803	85556803	+	822.438904	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-266817.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	27.5	12.5	12.0	19.0	8.0	7.0
Merged-chr11-50208270-3	chr11	50207761	50208761	+	822.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290769, intron 1 of 7)	intron (NM_001290769, intron 1 of 7)	2559.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62491067-3	chr10	62490585	62491585	+	822.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4280.0	NM_001358543	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-60973656-4	chr8	60973159	60974159	+	822.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007711, intron 1 of 11)	MTC|LTR|ERVL-MaLR	9652.0	NM_173873	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8149603-4	chr17	8149113	8150113	+	822.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1781.0	NM_026611	68195.0	Mm.181237	NM_026611	ENSMUSG00000094724	Rnaset2b	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-51918012-3	chr1	51917519	51918519	+	822.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2041.0	NM_010863	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	0.0	0.5	0.0	0.0	0.5	2.0
Merged-chr10-81597386-3	chr10	81596900	81597900	+	822.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359135)	promoter-TSS (NM_001359135)	-33.0	NM_001359135	114606.0	Mm.206764	NM_053254	ENSMUSG00000034758	Tle6	1810057E06Rik|Grg6	transducin-like enhancer of split 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40471601-4	chr12	40471107	40472107	+	822.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	25554.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-90247983-4	chr11	90247478	90248478	+	822.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1498.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11092285-4	chr19	11091812	11092812	+	822.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-11209.0	NM_022430	64381.0	Mm.34460	NM_022430	ENSMUSG00000024730	Ms4a8a	2010004L09Rik|AI481240|CD20L5|Ms4a8	membrane-spanning 4-domains, subfamily A, member 8A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37249724-3	chr13	37249204	37250204	+	822.3444820000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95641.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	4.0	1.0	0.0	2.5	6.5	3.5
Merged-chr8-78556902-2	chr8	78556402	78557402	+	822.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001009981, intron 4 of 10)	intron (NM_001009981, intron 4 of 10)	47574.0	NM_001282108	76775.0	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29510867-2	chr17	29510367	29511367	+	822.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19822.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98584746-4	chr7	98584258	98585258	+	822.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71811.0	NM_172280	233545.0	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	3.5	0.0	1.0	0.0	9.0	0.0
Merged-chr12-85454169-3	chr12	85453664	85454664	+	822.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19726.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-100606201-3	chr9	100605698	100606698	+	822.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35113.0	NM_001101483	245020.0	Mm.236289	NM_001101483	ENSMUSG00000070287	Slc35g2	Gm519|Tmem22	solute carrier family 35, member G2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3104767-5	chr11	3104183	3105183	+	822.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	-19338.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8264842-3	chr17	8264350	8265350	+	822.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18963.0	NM_018819	55951.0	Mm.288510	NM_018819	ENSMUSG00000023861	Mpc1	0610006G08Rik|3830411I18Rik|Brp44l	mitochondrial pyruvate carrier 1	protein-coding	2.5	8.0	5.0	0.0	0.0	2.0
Merged-chr19-5428164-2	chr19	5427664	5428664	+	822.333313	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001256515)	TTS (NM_001256515)	3020.0	NM_001256515	107242.0	Mm.329658	NM_134149	ENSMUSG00000047423	AI837181	Bles03|N28173	expressed sequence AI837181	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16746031-3	chr1	16745407	16746407	+	822.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57451.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	3.0	0.0	4.0	3.0	4.5	8.0
Merged-chr1-154062778-1	chr1	154062278	154063278	+	822.333313	f0_balb.idr	Intergenic	Intergenic	-138409.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78355712-4	chr15	78355208	78356208	+	822.325012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7109.0	NR_106137	102465776.0		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	17.5	5.5	3.0	6.5	4.0	4.0
Merged-chr9-14188892-2	chr9	14188392	14189392	+	822.3000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87409.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26438100-4	chr17	26437599	26438599	+	822.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081656, intron 2 of 4)	intron (NM_001081656, intron 2 of 4)	23134.0	NM_001081656	240055.0	Mm.133211	NM_001081656	ENSMUSG00000034413	Neurl1b	C230078M08Rik|EG240055	neuralized E3 ubiquitin protein ligase 1B	protein-coding	157.0	357.0	241.0	54.0	123.5	82.0
Merged-chr18-31805293-3	chr18	31804793	31805793	+	822.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028866, intron 1 of 21)	intron (NM_028866, intron 1 of 21)	1236.0	NM_001170966	74320.0	Mm.277705	NM_028866	ENSMUSG00000024400	Wdr33	1110001N06Rik|2310011G05Rik|2810021O11Rik|8430413N20Rik|WDC146	WD repeat domain 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-56026833-3	chr4	56026338	56027338	+	822.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-494363.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101335133-3	chr15	101334635	101335635	+	822.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34217.0	NR_035462	100316694.0		NR_035462	ENSMUSG00000088459	Mir1941	mmu-mir-1941	microRNA 1941	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116173899-4	chr9	116173401	116174401	+	822.267822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009371, intron 1 of 7)	intron (NM_009371, intron 1 of 7)	1462.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40382172-2	chr12	40381672	40382672	+	822.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_178845, intron 1 of 11)	MTC|LTR|ERVL-MaLR	63618.0	NM_172575	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78936524-2	chr17	78936034	78937034	+	822.25	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028611)	promoter-TSS (NM_028611)	536.0	NM_001024806	12607.0	Mm.24169	NM_009882	ENSMUSG00000024081	Cebpz	AI848081|CBF2|Cbf|Cebpa-rs1	CCAAT/enhancer binding protein zeta	protein-coding	2.5	13.0	11.0	1.5	10.0	11.5
Merged-chr6-116015389-2	chr6	116014889	116015889	+	822.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20384.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16841713-4	chr7	16841227	16842227	+	822.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133789)	TTS (NM_133789)	-1175.0	NM_001252458	101540.0	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41004390-2	chr10	41003890	41004890	+	822.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67900.0	NM_199058	140741.0	Mm.290693	NM_199058	ENSMUSG00000046922	Gpr6	AI852874|Gm233	G protein-coupled receptor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-64850943-4	chr16	64850450	64851450	+	822.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347245, intron 1 of 8)	intron (NM_001347245, intron 1 of 8)	773.0	NM_001347245	72020.0	Mm.25960	NM_028059	ENSMUSG00000047141	Zfp654	1600021C16Rik|1810008K20Rik|433036|Gm5488|Znf654	zinc finger protein 654	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-34682856-3	chr12	34682332	34683332	+	822.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	Lx8b|LINE|L1	-153943.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	22.5	12.0	19.5	21.5	48.0	23.0
Merged-chr7-68823464-2	chr7	68822964	68823964	+	822.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74226.0	NM_025549	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74880250-4	chr17	74879753	74880753	+	822.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-125276.0	NM_019919	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125604360-7	chr6	125603833	125604833	+	822.1904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011708, exon 15 of 52)	exon (NM_011708, exon 15 of 52)	51385.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-98367580-4	chr4	98367097	98368097	+	822.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053157, intron 4 of 6)	Lx|LINE|L1	15668.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32138817-4	chr9	32138312	32139312	+	822.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195632, intron 2 of 21)	L2a|LINE|L2	22676.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20892088-3	chr14	20891567	20892567	+	822.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37331.0	NM_009502	22330.0	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47127731-3	chr19	47127239	47128239	+	822.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011053, intron 30 of 35)	(TG)n|Simple_repeat|Simple_repeat	10555.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	2.0	15.5	3.5	1.0	9.5	12.0
Merged-chr6-31214602-3	chr6	31214095	31215095	+	822.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	URR1B|DNA|hAT-Charlie	3879.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62275448-2	chr10	62274948	62275948	+	822.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_010438, intron 19 of 21)	intron (NM_010438, intron 19 of 21)	23010.0	NM_009314	21337.0	Mm.8054	NM_009314	ENSMUSG00000020081	Tacr2	Nk2r|Skr|Tac2r	tachykinin receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116037434-3	chr6	116036943	116037943	+	822.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 4 of 5)	intron (NM_177412, intron 4 of 5)	-42438.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77459576-3	chr11	77459103	77460103	+	822.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291190, exon 14 of 14)	3' UTR (NM_001291190, exon 14 of 14)	-4310.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-9342952-2	chr14	9342452	9343452	+	822.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-541143.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149775888-2	chr4	149775388	149776388	+	822.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1621.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-114994366-2	chr4	114993866	114994866	+	822.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-5752.0	NM_001304559	20460.0	Mm.3988	NM_009185	ENSMUSG00000028718	Stil	Sil	Scl/Tal1 interrupting locus	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88514487-5	chr15	88514017	88515017	+	822.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85785.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-121259028-3	chr7	121258543	121259543	+	822.138916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-133253.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-72041937-4	chr11	72041423	72042423	+	822.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144526)	promoter-TSS (NM_144526)	-579.0	NM_144526	109212.0	Mm.33118	NM_144526	ENSMUSG00000020808	Pimreg	2610008F03Rik|6720460F02Rik|AI115087|CATS|Fam64a	PICALM interacting mitotic regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-122950399-4	chr9	122949907	122950907	+	822.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010620)	promoter-TSS (NM_010620)	593.0	NM_025419	66202.0	Mm.268307	NM_025419	ENSMUSG00000032551	1110059G10Rik	-	RIKEN cDNA 1110059G10 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61119410-2	chr18	61118926	61119926	+	822.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 11 of 21)	intron (NM_001037859, intron 11 of 21)	1958.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	16.5	28.5	26.0	20.5	14.5	17.5
Merged-chr4-137844861-3	chr4	137844399	137845399	+	822.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17338.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	0.0	0.0	5.0	0.0	0.0	0.0
Merged-chr17-50185911-3	chr17	50185452	50186452	+	822.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 1 of 9)	intron (NM_181397, intron 1 of 9)	4545.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-105786055-6	chr12	105785673	105786673	+	822.055542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011112, intron 1 of 21)	intron (NM_011112, intron 1 of 21)	1476.0	NM_001347440	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	16.5	46.5	11.5	24.0	28.0	22.5
Merged-chr5-81137300-4	chr5	81136783	81137783	+	822.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198702, intron 2 of 27)	MTD|LTR|ERVL-MaLR	115690.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136814926-4	chr6	136814460	136815460	+	822.035706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021714, intron 11 of 11)	B2_Mm1a|SINE|B2	6712.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	7.0	7.0	7.5	2.5	6.5	7.5
Merged-chr19-38799450-4	chr19	38798977	38799977	+	822.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021315, intron 11 of 20)	RLTR17B_Mm|LTR|ERVK	19760.0	NM_021315	57753.0	Mm.86482	NM_021315	ENSMUSG00000024999	Noc3l	AF233884|Fad24	NOC3 like DNA replication regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-97801544-2	chr13	97801044	97802044	+	822.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50432.0	NR_152263	111365222.0	Mm.440079	NR_152263		Eyelinc18	-	uncharacterized EyeLinc18	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118511064-1	chr7	118510564	118511564	+	822.0	f1_balb.idr	intron (NM_001304758, intron 6 of 6)	intron (NM_001304758, intron 6 of 6)	-19089.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-54611761-4	chr3	54611256	54612256	+	822.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81059.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	4.0	1.0	6.0	6.0	4.5	0.0
Merged-chr2-31381426-2	chr2	31380926	31381926	+	822.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88844.0	NM_007494	11898.0	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142282970-2	chr3	142282470	142283470	+	822.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001190856, exon 8 of 15)	exon (NM_001190856, exon 8 of 15)	108880.0	NM_022554	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	0.0	5.0	0.5	0.0	0.0	0.0
Merged-chr11-98829590-4	chr11	98829098	98830098	+	822.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138660, intron 11 of 13)	intron (NM_138660, intron 11 of 13)	-7187.0	NM_001080925	268480.0	Mm.340766	NM_001080925	ENSMUSG00000038020	Rapgefl1	B230105J10	Rap guanine nucleotide exchange factor (GEF)-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60734537-2	chr13	60734037	60735037	+	822.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 17 of 26)	intron (NM_134062, intron 17 of 26)	51827.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	2.0	5.0	0.0	0.0	8.0	2.0
Merged-chr4-108546247-1	chr4	108545747	108546747	+	822.0	f0_c57.idr	intron (NM_175472, intron 25 of 30)	intron (NM_175472, intron 25 of 30)	33089.0	NM_172697	230596.0	Mm.157534	NM_172697	ENSMUSG00000063800	Prpf38a	2410002M20Rik	PRP38 pre-mRNA processing factor 38 (yeast) domain containing A	protein-coding	0.0	14.0	1.0	1.0	0.0	1.5
Merged-chr6-49074332-1	chr6	49073832	49074832	+	822.0	f1_c57bl6.idr	intron (NM_029353, intron 1 of 3)	intron (NM_029353, intron 1 of 3)	537.0	NM_029353	75593.0	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	27.0	46.0	71.0	36.5	71.0	53.5
Merged-chr17-26462405-2	chr17	26461905	26462905	+	822.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	46067.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108896761-3	chr8	108896400	108897400	+	822.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 4 of 9)	intron (NM_007496, intron 4 of 9)	-39960.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	3.5	0.0	2.0	5.0	0.0	2.5
Merged-chr7-118855258-1	chr7	118854758	118855758	+	822.0	f0_balb.idr	promoter-TSS (NM_001081446)	promoter-TSS (NM_001081446)	355.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	7.5	14.0	9.0	14.5	12.5	15.5
Merged-chr8-117371933-2	chr8	117371433	117372433	+	822.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	22763.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90184285-2	chr9	90183899	90184899	+	822.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_001003911, intron 8 of 23)	intron (NM_001003911, intron 8 of 23)	21421.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	7.5	6.5	0.0	0.0	0.5	3.5
Merged-chr1-64615880-6	chr1	64615426	64616426	+	822.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025964, intron 1 of 2)	intron (NM_025964, intron 1 of 2)	1242.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116672836-2	chr11	116672336	116673336	+	822.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_028569)	TTS (NR_028569)	331.0	NR_028569	100216536.0		NR_028569	ENSMUSG00000065640	Snord1c	-	small nucleolar RNA, C/D box 1C	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61372690-2	chr10	61372190	61373190	+	822.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013753, intron 1 of 19)	intron (NM_013753, intron 1 of 19)	10833.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60875251-2	chr18	60874751	60875751	+	822.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26287.0	NM_001198984	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	0.5	2.0	1.5	1.5	5.0	0.0
Merged-chr10-83636290-2	chr10	83635790	83636790	+	822.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145220, intron 2 of 20)	intron (NM_145220, intron 2 of 20)	12374.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-40368094-1	chr11	40367594	40368594	+	822.0	f0_balb.idr	Intergenic	Intergenic	324588.0	NM_134017	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	0.0	1.0	1.0	0.0	0.0	0.0
Merged-chr18-76035204-1	chr18	76034704	76035704	+	822.0	f1_balb.idr	intron (NM_145356, intron 3 of 4)	intron (NM_145356, intron 3 of 4)	-24122.0	NM_001357506	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	0.0	0.0	2.5	6.5	0.0	1.0
Merged-chr11-106489098-2	chr11	106488598	106489598	+	822.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1302.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94097872-2	chr13	94097372	94098372	+	822.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 1 of 3)	intron (NM_172589, intron 1 of 3)	40076.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-63907311-5	chr7	63906802	63907802	+	822.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	B1_Mur3|SINE|Alu	-9555.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	4.5	75.0	24.0	5.5	42.0	17.0
Merged-chr9-111035486-2	chr9	111034989	111035989	+	822.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008522, intron 13 of 16)	HAL1|LINE|L1	16197.0	NM_008522	17002.0	Mm.282359	NM_008522	ENSMUSG00000032496	Ltf	Csp82|Lf|MMS10R|Ms10r	lactotransferrin	protein-coding	0.0	15.0	3.5	3.5	6.5	2.0
Merged-chr17-31078637-2	chr17	31078137	31079137	+	822.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	RMER30|DNA|hAT-Charlie	20943.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-54829430-1	chr1	54828930	54829930	+	822.0	f0_balb.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	96957.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7062760-3	chr10	7062257	7063257	+	822.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39572.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124137293-2	chr5	124136793	124137793	+	822.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289472, intron 5 of 24)	RSINE1|SINE|B4	21185.0	NM_144509	65105.0	Mm.29430	NM_144509	ENSMUSG00000029404	Arl6ip4	AA408210|AA408365|Aip-4|Srp25	ADP-ribosylation factor-like 6 interacting protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56732162-3	chr19	56731664	56732664	+	822.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9792.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4634449-2	chr16	4633949	4634949	+	822.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030205, intron 13 of 27)	intron (NM_030205, intron 13 of 27)	-5496.0	NM_139307	246154.0	Mm.482140	NM_139307	ENSMUSG00000039646	Vasn	2610528G05Rik|Atia|Slitl2	vasorin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80591031-2	chr10	80590531	80591531	+	822.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145421)	promoter-TSS (NM_145421)	-690.0	NM_145421	216169.0	Mm.29802	NM_145421	ENSMUSG00000003346	Abhd17a	1700013O15Rik|BC005632|D10Bwg1364e|Fam108a	abhydrolase domain containing 17A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-86743228-2	chr3	86742728	86743728	+	822.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077687, intron 50 of 50)	intron (NM_001077687, intron 50 of 50)	177656.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99448158-2	chr7	99447658	99448658	+	822.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001362166, exon 9 of 19)	exon (NM_001362166, exon 9 of 19)	-17846.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr18-37993203-1	chr18	37992703	37993703	+	822.0	f0_balb.idr	intron (NM_139206, intron 4 of 32)	L2|LINE|L2	-2258.0	NR_105946	102466913.0		NR_105946	ENSMUSG00000098297	Mir6980	Gm27969|mmu-mir-6980	microRNA 6980	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32878959-2	chr16	32878504	32879504	+	822.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356387, intron 1 of 7)	RMER21A|LTR|ERV1	1220.0	NM_001159349	69823.0	Mm.12831	NM_027226	ENSMUSG00000022800	Fyttd1	2010005M05Rik|3830411L18Rik|3830421F13Rik|4933423A17Rik|AI098218|AW539567|C85190	forty-two-three domain containing 1	protein-coding	9.0	3.5	10.0	1.5	11.5	6.5
Merged-chr10-94577672-3	chr10	94577145	94578145	+	822.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177026, intron 1 of 3)	CYRA11_Mm|Unknown|Y-chromosome	1382.0	NM_177026	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94909930-2	chr8	94909430	94910430	+	822.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033533, intron 3 of 8)	intron (NM_001033533, intron 3 of 8)	8168.0	NM_001033533	234582.0	Mm.277871	NM_001033533	ENSMUSG00000063605	Ccdc102a	BC027663|Gm586	coiled-coil domain containing 102A	protein-coding	1.0	5.5	2.0	4.0	13.0	2.0
Merged-chr10-117859596-2	chr10	117859096	117860096	+	822.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-13622.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-68344459-2	chr8	68343959	68344959	+	822.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028182, intron 7 of 8)	intron (NM_028182, intron 7 of 8)	-24000.0	NR_038189	73609.0	Mm.443247	NR_038181	ENSMUSG00000085197	1700125H03Rik	4930510D22Rik	RIKEN cDNA 1700125H03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118011033-4	chr2	118010473	118011473	+	822.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	100229.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	0.0	1.0	0.0	0.0	0.0	5.0
Merged-chr3-108883742-1	chr3	108883242	108884242	+	822.0	f0_balb.idr	intron (NM_001165965, intron 2 of 11)	intron (NM_001165965, intron 2 of 11)	6266.0	NM_177091	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	16.0	8.0	7.5	2.0	10.0	15.5
Merged-chr7-109879224-2	chr7	109878724	109879724	+	822.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13545.0	NM_020052	56788.0	Mm.40447	NM_020052	ENSMUSG00000007279	Scube2	4932442O19Rik|Cegf1|Cegp1	signal peptide, CUB domain, EGF-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97452947-2	chr6	97452447	97453447	+	822.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	PB1D9|SINE|Alu	6339.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122091287-2	chr5	122090787	122091787	+	822.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9664.0	NM_010861	17906.0	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5566768-2	chr19	5566268	5567268	+	822.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-1256.0	NM_001362046	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138884420-4	chr4	138883897	138884897	+	821.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6455.0	NM_012044	26970.0	Mm.296007	NM_012044	ENSMUSG00000028751	Pla2g2e	-	phospholipase A2, group IIE	protein-coding	0.0	1.0	1.0	0.0	5.0	8.0
Merged-chr17-67405797-4	chr17	67405293	67406293	+	821.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51302.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	6.0	11.0	4.0	1.5	15.5	20.5
Merged-chr17-71529199-3	chr17	71528689	71529689	+	821.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2332.0	NM_023294	67052.0	Mm.225956	NM_023294	ENSMUSG00000024056	Ndc80	2610020P18Rik|AV139730|HEC|HEC1|Kntc2	NDC80 kinetochore complex component	protein-coding	8.5	26.5	22.5	14.0	24.0	9.5
Merged-chr8-83896047-3	chr8	83895515	83896515	+	821.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4083.0	NM_181039	330814.0	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	4.0	8.0	5.5	5.0	9.0	0.5
Merged-chr10-120366391-6	chr10	120366042	120367042	+	821.930542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010441, intron 4 of 4)	intron (NM_010441, intron 4 of 4)	-22981.0	NR_040626	320626.0	Mm.446091	NR_040626	ENSMUSG00000090191	9230105E05Rik	-	RIKEN cDNA 9230105E05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-80759892-4	chr1	80759432	80760432	+	821.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1379.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6707682-4	chr15	6707180	6708180	+	821.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030168)	promoter-TSS (NM_030168)	-701.0	NM_030168	78757.0	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-127582927-3	chr6	127582427	127583427	+	821.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033464, intron 1 of 6)	intron (NM_001033464, intron 1 of 6)	4952.0	NM_001033464	381812.0	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	8.0	9.5	2.5	7.0	4.0	3.5
Merged-chr1-106200060-6	chr1	106199571	106200571	+	821.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	28202.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-21468202-4	chr3	21467682	21468682	+	821.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1|DNA|hAT-Tip100	-608470.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98867438-4	chr13	98866979	98867979	+	821.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 7 of 23)	intron (NM_178716, intron 7 of 23)	23563.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125433892-4	chr6	125433385	125434385	+	821.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53381.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	2.0	2.5	0.5	0.0	2.5	1.0
Merged-chr11-61950812-2	chr11	61950312	61951312	+	821.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5951.0	NM_001281818	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-167341240-2	chr1	167340740	167341740	+	821.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-8751.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-44557207-2	chr2	44556707	44557707	+	821.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	304415.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13197461-4	chr16	13196978	13197978	+	821.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59003.0	NM_001122667	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-33253314-4	chr4	33252809	33253809	+	821.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4522.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	5.5	1.5	14.0	0.0	4.5	4.0
Merged-chr5-91957145-2	chr5	91956629	91957629	+	821.833313	f1_balb.idr|f1_c57bl6.idr	intron (NR_073442, intron 4 of 9)	B1_Mur4|SINE|Alu	5427.0	NR_073442	68098.0	Mm.159453	NM_026557	ENSMUSG00000029397	Rchy1	ARNIP|CHIMP|Pirh2|Zfp363|Znf363	ring finger and CHY zinc finger domain containing 1	protein-coding	7.0	1.5	1.5	3.0	15.0	3.0
Merged-chr10-94039007-3	chr10	94038502	94039502	+	821.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 1 of 20)	intron (NM_053072, intron 1 of 20)	3001.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	47.0	45.5	87.0	8.0	21.5	15.5
Merged-chr14-51140553-3	chr14	51140061	51141061	+	821.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6206.0	NM_011271	19752.0	Mm.235538	NM_011271	ENSMUSG00000035896	Rnase1	AI574248|Rib-1|Rib1	ribonuclease, RNase A family, 1 (pancreatic)	protein-coding	0.0	0.5	12.5	4.5	22.0	1.5
Merged-chr3-132085332-3	chr3	132084827	132085827	+	821.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020265)	promoter-TSS (NM_020265)	35.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121658481-4	chr11	121657962	121658962	+	821.795837	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178664, intron 3 of 12)	intron (NM_178664, intron 3 of 12)	14689.0	NM_178664	210004.0	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182292239-4	chr1	182291749	182292749	+	821.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-8585.0	NR_015458	67330.0	Mm.331019	NR_015458	ENSMUSG00000100147	1700047M11Rik	-	RIKEN cDNA 1700047M11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88351880-4	chr10	88351383	88352383	+	821.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 1 of 6)	intron (NM_027878, intron 1 of 6)	5192.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-100420059-3	chr3	100419569	100420569	+	821.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6336.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114530779-3	chr7	114530279	114531279	+	821.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011055, exon 13 of 16)	exon (NM_011055, exon 13 of 16)	32193.0	NR_110407	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166964988-3	chr2	166964490	166965490	+	821.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_111895)	promoter-TSS (NR_111895)	-273.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122620050-8	chr3	122619660	122620660	+	821.770813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153118)	promoter-TSS (NM_153118)	-446.0	NM_001114665	214459.0	Mm.209491	NM_153118	ENSMUSG00000039735	Fnbp1l	2610318I01Rik|AW548221|TOCA1|toca-1	formin binding protein 1-like	protein-coding	11.0	20.0	20.5	4.0	5.0	5.5
Merged-chr17-27622779-5	chr17	27622286	27623286	+	821.766663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001291046, exon 1 of 5)	5' UTR (NM_001291046, exon 1 of 5)	178.0	NM_001291046	56409.0	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	6.5	23.0	22.5	10.5	27.0	12.0
Merged-chr11-118233695-2	chr11	118233195	118234195	+	821.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	14897.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61311112-2	chr14	61310612	61311612	+	821.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_177337, exon 2 of 2)	exon (NM_177337, exon 2 of 2)	1359.0	NM_177337	219144.0	Mm.206566	NM_177337	ENSMUSG00000043157	Arl11	ARLTS1|C730007L20Rik	ADP-ribosylation factor-like 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153445019-4	chr2	153444519	153445519	+	821.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001986)	promoter-TSS (NM_001001986)	-540.0	NM_001001986	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89127013-2	chr15	89126513	89127513	+	821.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_028448, intron 5 of 17)	intron (NR_028448, intron 5 of 17)	1687.0	NR_028448	170787.0	Mm.203954	NM_199198	ENSMUSG00000062906	Hdac10	AW548891|Hd10	histone deacetylase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91949506-2	chr2	91948968	91949968	+	821.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166597, intron 1 of 31)	intron (NM_001166597, intron 1 of 31)	880.0	NM_001166597	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	7.0	21.5	14.0	6.5	20.0	17.5
Merged-chr15-78405864-3	chr15	78405336	78406336	+	821.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162493)	promoter-TSS (NM_001162493)	23.0	NM_009437	22117.0	Mm.15312	NM_009437	ENSMUSG00000044986	Tst	Rhodanese	thiosulfate sulfurtransferase, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95044250-3	chr13	95043727	95044727	+	821.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172263, intron 12 of 19)	intron (NM_172263, intron 12 of 19)	67883.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41390338-3	chr4	41389858	41390858	+	821.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001290454)	TTS (NM_001290454)	38395.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	0.0	0.0	4.0	0.0	0.0	0.0
Merged-chr14-21683017-4	chr14	21682503	21683503	+	821.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013826, intron 3 of 3)	intron (NM_001013826, intron 3 of 3)	31573.0	NM_001013826	435391.0	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-87374344-4	chr12	87373845	87374845	+	821.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011479, intron 1 of 11)	intron (NM_011479, intron 1 of 11)	14010.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11192330-4	chr4	11191831	11192831	+	821.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282943, intron 1 of 11)	intron (NM_001282943, intron 1 of 11)	622.0	NM_001282943	12448.0	Mm.35867	NM_009830	ENSMUSG00000028212	Ccne2	-	cyclin E2	protein-coding	0.0	0.0	2.5	0.0	0.0	4.0
Merged-chr17-74296677-2	chr17	74296177	74297177	+	821.6999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1814.0	NM_133771	76890.0	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27725113-4	chr2	27724555	27725555	+	821.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	14472.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4098194-2	chr19	4097694	4098694	+	821.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_026373, intron 3 of 3)	intron (NM_026373, intron 3 of 3)	843.0	NM_026373	52004.0	Mm.29609	NM_026373	ENSMUSG00000024856	Cdk2ap2	5830466O21Rik|D19Ertd144e|Doc-1r	CDK2-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-80357203-3	chr2	80356655	80357655	+	821.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34209.0	NR_040370	100503167.0	Mm.265892	NR_040370		Gm13752	-	predicted gene 13752	ncRNA	5.0	7.5	3.5	0.0	9.0	5.0
Merged-chr1-155471541-3	chr1	155471050	155472050	+	821.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54106.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55365658-3	chr19	55365162	55366162	+	821.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 3 of 8)	intron (NM_001360431, intron 3 of 8)	49605.0	NM_001293686	53611.0	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74273647-3	chr1	74273160	74274160	+	821.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-4940.0	NM_174985	227289.0	Mm.246587	NM_174985	ENSMUSG00000064272	Gpbar1	BG37|GPCR|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144043335-4	chr3	144042850	144043850	+	821.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	158982.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115583520-3	chr8	115583059	115584059	+	821.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	123335.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-62844662-1	chr5	62844162	62845162	+	821.666687	f0_balb.idr	intron (NM_001170705, intron 6 of 8)	intron (NM_001170705, intron 6 of 8)	30839.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	24.5	110.5	45.0	43.0	53.0	55.0
Merged-chr8-79384814-3	chr8	79384326	79385326	+	821.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	14642.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116632325-4	chr6	116631843	116632843	+	821.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178045)	TTS (NM_178045)	-3344.0	NM_026057	67255.0	Mm.18810	NM_026057	ENSMUSG00000059878	Zfp422	2900028O21Rik|AU041373|KOX15|Krox-25-2|Krox-26|Krox25|Krox26|Znf22	zinc finger protein 422	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-83301851-3	chr10	83301357	83302357	+	821.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177388, intron 4 of 10)	intron (NM_177388, intron 4 of 10)	35960.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-55500253-3	chr15	55499760	55500760	+	821.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181277, intron 44 of 47)	intron (NM_181277, intron 44 of 47)	57052.0	NM_026759	68537.0	Mm.236795	NM_026759	ENSMUSG00000022370	Mrpl13	1110002D09Rik	mitochondrial ribosomal protein L13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13671422-2	chr8	13670922	13671922	+	821.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	6165.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	5.0	11.0	6.5	15.5	15.0	9.0
Merged-chr14-69835475-2	chr14	69834975	69835975	+	821.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4932.0	NM_028560	73523.0	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40544779-4	chr12	40544282	40545282	+	821.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	98729.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20877106-2	chr9	20876606	20877606	+	821.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145154, intron 2 of 5)	intron (NM_145154, intron 2 of 5)	2604.0	NM_145154	70726.0	Mm.34019	NM_145154	ENSMUSG00000038742	Angptl6	6330404E11Rik|AGF|ARP3|Arp5	angiopoietin-like 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113662914-4	chr6	113662364	113663364	+	821.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	24397.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116226704-2	chr11	116226204	116227204	+	821.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_025276, intron 18 of 21)	intron (NM_025276, intron 18 of 21)	10702.0	NR_004853	69681.0	Mm.33677	NR_004853	ENSMUSG00000092300	Cdk3-ps	2310050O10Rik|Cdk3	cyclin-dependent kinase 3, pseudogene	pseudo	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr14-36862300-7	chr14	36861658	36862658	+	821.642883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57377.0	NM_001347503	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-122885032-4	chr4	122884481	122885481	+	821.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007598, intron 1 of 12)	intron (NM_007598, intron 1 of 12)	1095.0	NM_001358035	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79286271-4	chr3	79285796	79286796	+	821.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59080.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	34.5	77.0	48.0	23.5	81.0	23.5
Merged-chr10-12871266-3	chr10	12870796	12871796	+	821.611145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-9561.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	46.5	39.0	27.5	5.0	7.0	9.0
Merged-chr2-157567505-2	chr2	157567005	157568005	+	821.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1144.0	NM_016916	53619.0	Mm.480461	NM_016916	ENSMUSG00000067787	Blcap	AI462828|Bc10	bladder cancer associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99379723-4	chr9	99379227	99380227	+	821.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21197.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37177240-4	chr9	37176668	37177668	+	821.575012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29846.0	NM_001029838	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	1.0	2.0	0.0	1.5	0.0	0.0
Merged-chr14-34644154-3	chr14	34643688	34644688	+	821.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_029647)	TTS (NR_029647)	9386.0	NR_029647	723831.0		NR_029647	ENSMUSG00000094316	Mir297-1	Mir297a-1|Mirn297-1	microRNA 297-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-73677757-4	chr8	73677264	73678264	+	821.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER3|DNA|hAT-Charlie	-324224.0	NM_010687	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	1.0	0.0	0.0	0.0	0.0	1.0
Merged-chr6-124998357-2	chr6	124997857	124998857	+	821.541626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145927)	promoter-TSS (NM_001145927)	-80.0	NM_001145927	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103550208-3	chr15	103549662	103550662	+	821.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-12170.0	NM_021391	58200.0	Mm.143788	NM_021391	ENSMUSG00000022490	Ppp1r1a	0610038N18Rik|I-1	protein phosphatase 1, regulatory (inhibitor) subunit 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11011303-2	chr16	11010803	11011803	+	821.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040518, intron 1 of 2)	intron (NR_040518, intron 1 of 2)	2405.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121409450-2	chr10	121408950	121409950	+	821.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_138956)	TTS (NM_138956)	44360.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0.0	5.0	2.5	0.0	0.5	0.0
Merged-chr13-6660957-2	chr13	6660457	6661457	+	821.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-12186.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93687164-2	chr16	93686667	93687667	+	821.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173047, intron 2 of 2)	intron (NM_173047, intron 2 of 2)	3948.0	NM_173047	109857.0	Mm.4512	NM_173047	ENSMUSG00000022947	Cbr3	1110001J05Rik|C81353	carbonyl reductase 3	protein-coding	0.0	0.0	0.0	0.0	4.0	1.5
Merged-chr2-148876141-2	chr2	148875641	148876641	+	821.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009976)	promoter-TSS (NM_009976)	-629.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102067045-2	chr15	102066545	102067545	+	821.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-6728.0	NM_145625	75705.0	Mm.290022	NM_145625	ENSMUSG00000058655	Eif4b	2310046H11Rik|AL024095|C85189|Eif4a2	eukaryotic translation initiation factor 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86414510-2	chr1	86414010	86415010	+	821.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11819.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90498163-2	chr3	90497663	90498663	+	821.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001293781)	TTS (NM_001293781)	-7150.0	NM_133854	20615.0	Mm.331182	NM_133854	ENSMUSG00000001018	Snapin	25kDa|AA407989|AV026596|Bloc1s7|Snap25bp|Snapap	SNAP-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8669605-2	chr12	8669105	8670105	+	821.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4529.0	NM_001160221	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-150638242-2	chr3	150637742	150638742	+	821.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	385620.0	NR_039540	100628568.0		NR_039540	ENSMUSG00000092830	Mir3963	mmu-mir-3963|mu-mir-3963	microRNA 3963	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-72927188-4	chr17	72926691	72927691	+	821.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029999, intron 2 of 2)	intron (NM_029999, intron 2 of 2)	8886.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	2.5	24.5	7.0	13.0	27.0	16.5
Merged-chr3-7576025-2	chr3	7575525	7576525	+	821.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008371, exon 4 of 5)	exon (NM_008371, exon 4 of 5)	36868.0	NM_001313890	16196.0	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	3.5	2.0	1.0	10.0	3.0	0.5
Merged-chr16-35921885-2	chr16	35921385	35922385	+	821.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-16585.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106741919-2	chr11	106741419	106742419	+	821.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-9307.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49980873-2	chr11	49980373	49981373	+	821.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347462)	TTS (NM_001347462)	-44458.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141287206-3	chr4	141286718	141287718	+	821.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8779.0	NR_151527	100503810.0		NR_151527	ENSMUSG00000085395	Gm13056	-	predicted gene 13056	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-130695054-2	chr3	130694554	130695554	+	821.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025509)	TTS (NM_025509)	14390.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131061263-2	chr1	131060763	131061763	+	821.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	B1F|SINE|Alu	36580.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0.0	5.0	5.0	5.0	3.0	2.0
Merged-chr9-75277566-2	chr9	75277069	75278069	+	821.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081322, intron 22 of 40)	L3b|LINE|CR1	-28719.0	NM_010313	14697.0	Mm.17604	NM_010313	ENSMUSG00000032192	Gnb5	GBS|Gbeta5|flr	guanine nucleotide binding protein (G protein), beta 5	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr4-9780345-4	chr4	9779824	9780824	+	821.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030693, intron 1 of 3)	intron (NR_030693, intron 1 of 3)	9739.0	NR_030693	320152.0	Mm.159946	NR_030693		4930412C18Rik	5730591J02Rik	RIKEN cDNA 4930412C18 gene	ncRNA	0.0	5.5	0.0	0.0	5.5	0.0
Merged-chr13-98998141-3	chr13	98997642	98998642	+	821.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13577.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135350307-2	chr4	135349807	135350807	+	821.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016799, intron 1 of 17)	intron (NM_016799, intron 1 of 17)	2907.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126436261-2	chr4	126435761	126436761	+	821.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001317173, exon 19 of 19)	3' UTR (NM_001317173, exon 19 of 19)	-6719.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	2.0	5.5	0.5	0.0	0.0	0.0
Merged-chr3-73700795-2	chr3	73700295	73701295	+	821.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009738, exon 2 of 4)	exon (NM_009738, exon 2 of 4)	7620.0	NM_009738	12038.0	Mm.250719	NM_009738	ENSMUSG00000027792	Bche	C730038G20Rik	butyrylcholinesterase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61981593-2	chr18	61981093	61982093	+	821.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172628, intron 8 of 16)	intron (NM_172628, intron 8 of 16)	28518.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-40378935-2	chr1	40378435	40379435	+	821.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50635.0	NM_001294171	17082.0	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77967884-2	chr10	77967384	77968384	+	821.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 2 of 33)	intron (NM_138301, intron 2 of 33)	1988.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6599926-2	chr11	6599426	6600426	+	821.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081652, exon 2 of 8)	exon (NM_001081652, exon 2 of 8)	6128.0	NM_001081652	192950.0	Mm.337771	NM_001081652	ENSMUSG00000041073	Nacad	D230024G13Rik|mKIAA0363	NAC alpha domain containing	protein-coding	0.0	0.0	3.5	0.5	0.0	0.0
Merged-chr4-6428287-2	chr4	6427787	6428787	+	821.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 10 of 30)	intron (NM_010945, intron 10 of 30)	25984.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-40272435-1	chr8	40271935	40272935	+	821.5	f0_balb.idr	Intergenic	Intergenic	14518.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	1.0	3.0	1.0	1.0	5.0	3.0
Merged-chr8-64945490-2	chr8	64944990	64945990	+	821.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1695.0	NM_001163747	73067.0	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126821484-2	chr8	126820984	126821984	+	821.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27536.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.5	1.0	1.5	0.5	0.0	0.0
Merged-chr12-102697230-2	chr12	102696730	102697730	+	821.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	7639.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55569313-2	chr14	55568813	55569813	+	821.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133734, exon 15 of 15)	exon (NM_133734, exon 15 of 15)	-6361.0	NM_026808	68680.0	Mm.36758	NM_026808	ENSMUSG00000022215	Fitm1	1110028A07Rik|AV010547|Cg10671|Fit1	fat storage-inducing transmembrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93261786-2	chr10	93261293	93262293	+	821.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282967, intron 2 of 3)	intron (NM_001282967, intron 2 of 3)	49366.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	17.5	63.5	43.5	18.0	64.0	41.5
Merged-chr16-9083060-2	chr16	9082560	9083560	+	821.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	252960.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26345245-3	chr8	26344713	26345713	+	821.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	187044.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	0.0	11.5	2.5	2.5	6.0	2.0
Merged-chr2-68465695-3	chr2	68465216	68466216	+	821.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 1 of 17)	intron (NM_016866, intron 1 of 17)	6265.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44355071-4	chr11	44354592	44355592	+	821.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44971.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116656217-4	chr4	116655715	116656715	+	821.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-4541.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-25622717-4	chr19	25622225	25623225	+	821.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177360, exon 2 of 2)	exon (NM_177360, exon 2 of 2)	12188.0	NM_177360	240590.0	Mm.62785	NM_177360	ENSMUSG00000042372	Dmrt3	-	doublesex and mab-3 related transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31413113-3	chr15	31412623	31413623	+	821.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	40566.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12251925-4	chr13	12251430	12252430	+	821.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081128, intron 2 of 32)	intron (NM_001081128, intron 2 of 32)	6183.0	NM_001081128	238505.0	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4914811-2	chr16	4914311	4915311	+	821.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 5 of 17)	intron (NM_001357062, intron 5 of 17)	-24300.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50023616-2	chr11	50023116	50024116	+	821.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1715.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28395593-2	chr7	28395093	28396093	+	821.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019458, intron 4 of 13)	intron (NM_019458, intron 4 of 13)	2597.0	NM_019458	54624.0	Mm.7916	NM_019458	ENSMUSG00000003437	Paf1	5730511K23Rik|AA675045	Paf1, RNA polymerase II complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3718733-4	chr8	3718236	3719236	+	821.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029465, intron 3 of 8)	intron (NM_029465, intron 3 of 8)	1915.0	NM_029465	75863.0	Mm.109183	NM_029465	ENSMUSG00000074491	Clec4g	4930572L20Rik	C-type lectin domain family 4, member g	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15583276-3	chr17	15582764	15583764	+	821.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19941.0	NM_144809	213389.0	Mm.215162	NM_144809	ENSMUSG00000051977	Prdm9	BC012016|Dsbc1|G1-419-29|Meisetz|PRDM9-B|Rcr1|repro7	PR domain containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-60865772-3	chr8	60865286	60866286	+	821.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24607.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-76099143-3	chr13	76098636	76099636	+	821.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029847)	promoter-TSS (NM_029847)	402.0	NM_001081352	218343.0	Mm.277964	NM_001081352	ENSMUSG00000033991	Ttc37	-	tetratricopeptide repeat domain 37	protein-coding	0.0	1.0	0.0	0.0	1.0	0.0
Merged-chr14-75229995-4	chr14	75229471	75230471	+	821.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001247984, exon 16 of 16)	3' UTR (NM_001247984, exon 16 of 16)	-12316.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59450554-3	chr11	59450067	59451067	+	821.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356452)	promoter-TSS (NM_001356452)	522.0	NM_001205068	194952.0	Mm.295954	NM_178659	ENSMUSG00000036819	Jmjd4	6430559I23	jumonji domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-43624621-3	chr15	43624110	43625110	+	821.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	147381.0	NM_025736	66736.0	Mm.244512	NM_025736	ENSMUSG00000022337	Emc2	4921531G14Rik|AV060620|AW209495|Ttc35	ER membrane protein complex subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112578845-4	chr12	112578369	112579369	+	821.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9915.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132604065-3	chr2	132603559	132604559	+	821.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033469, intron 2 of 3)	intron (NR_033469, intron 2 of 3)	5863.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37419748-4	chr19	37419247	37420247	+	821.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010615, intron 21 of 21)	intron (NM_010615, intron 21 of 21)	-15094.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128739547-5	chr2	128739089	128740089	+	821.286682	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 4 of 18)	intron (NM_008587, intron 4 of 18)	40674.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	27.5	18.5	8.5	27.5	18.5	8.5
Merged-chr5-102778028-3	chr5	102777536	102778536	+	821.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286468, intron 1 of 7)	intron (NM_001286468, intron 1 of 7)	9226.0	NM_001286468	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84286400-3	chr1	84285901	84286901	+	821.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1756.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77361170-3	chr11	77360659	77361659	+	821.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291190, intron 1 of 13)	intron (NM_001291190, intron 1 of 13)	12879.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-43984123-4	chr14	43983610	43984610	+	821.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22308.0	NM_001011876	630952.0		NM_001011876	ENSMUSG00000072598	Ang6	EG630952	angiogenin, ribonuclease A family, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62886117-4	chr10	62885603	62886603	+	821.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253857, intron 1 of 12)	PB1D9|SINE|Alu	1221.0	NM_001253857	52463.0	Mm.17774	NM_027384	ENSMUSG00000047146	Tet1	2510010B09Rik|AA517754|BB001228|Cxxc6|D10Ertd17e|LCX|mKIAA1676	tet methylcytosine dioxygenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54866946-4	chr6	54866452	54867452	+	821.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199143, intron 2 of 4)	intron (NM_199143, intron 2 of 4)	50036.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73425984-4	chr13	73425458	73426458	+	821.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41425.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13933514-2	chr10	13933014	13934014	+	821.25	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32561.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	6.0	5.0	6.5	4.0	3.5	3.0
Merged-chr12-17011660-4	chr12	17011162	17012162	+	821.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001201332)	promoter-TSS (NM_001201332)	65.0	NM_001201332	73667.0	Mm.159048	NM_001201332	ENSMUSG00000071398	2410004P03Rik	-	RIKEN cDNA 2410004P03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45101985-2	chr2	45101485	45102485	+	821.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	8292.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-99205093-3	chr13	99204552	99205552	+	821.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	20229.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	20.5	35.5	20.0	11.5	39.0	14.0
Merged-chr1-71098135-3	chr1	71097626	71098626	+	821.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007525, intron 1 of 10)	MTD|LTR|ERVL-MaLR	4846.0	NM_007525	12021.0	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	-	BRCA1 associated RING domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4509472-5	chr2	4508990	4509990	+	821.200012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 5 of 23)	intron (NM_001177843, intron 5 of 23)	-50264.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-18892407-4	chr7	18891922	18892922	+	821.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033314, intron 10 of 13)	CpG	7732.0	NM_009402	21946.0	Mm.21855	NM_009402	ENSMUSG00000030413	Pglyrp1	PGRP|PGRP-S|Pglyrp|Tag7|Tasg7|Tnfsf3l	peptidoglycan recognition protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-24420553-4	chr8	24420054	24421054	+	821.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18392.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-99175319-3	chr13	99174809	99175809	+	821.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9514.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	3.0	1.0	6.0	10.0	5.0	2.5
Merged-chr17-26202985-2	chr17	26202485	26203485	+	821.166687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081069)	promoter-TSS (NM_001081069)	44.0	NM_001081069	50782.0	Mm.109840	NM_001081069	ENSMUSG00000024186	Rgs11	C78048	regulator of G-protein signaling 11	protein-coding	1.0	0.0	0.0	0.0	0.0	0.5
Merged-chr9-3199771-3	chr9	3199252	3200252	+	821.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027988)	promoter-TSS (NR_027988)	61.0	NR_027988	114673.0	Mm.422774	NM_053265	ENSMUSG00000042360	4930433N12Rik	-	RIKEN cDNA 4930433N12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-45736913-3	chr16	45736414	45737414	+	821.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001272070, exon 4 of 6)	exon (NM_001272070, exon 4 of 6)	6041.0	NM_001272070	213012.0	Mm.247453	NM_172511	ENSMUSG00000033157	Abhd10	-	abhydrolase domain containing 10	protein-coding	8.0	9.0	12.5	14.0	4.5	19.0
Merged-chr5-130405477-2	chr5	130404977	130405977	+	821.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_181045, intron 1 of 6)	intron (NM_181045, intron 1 of 6)	-20846.0	NM_198665	381673.0	Mm.192133	NM_198665	ENSMUSG00000052014	A330070K13Rik	Gm1051	RIKEN cDNA A330070K13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145251142-2	chr7	145250571	145251571	+	821.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_132644, intron 24 of 24)	intron (NR_132644, intron 24 of 24)	32940.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	0.0	7.0	2.5	6.0	0.0	0.0
Merged-chr15-96640282-2	chr15	96639782	96640782	+	821.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166458, intron 1 of 15)	intron (NM_001166458, intron 1 of 15)	1680.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91971019-4	chr2	91970491	91971491	+	821.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7428.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	19.5	28.0	22.5	4.0	20.0	14.0
Merged-chr5-21363481-4	chr5	21362995	21363995	+	821.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	L1MA5|LINE|L1	-9178.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164839490-2	chr2	164838990	164839990	+	821.125	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011125)	TTS (NM_011125)	5717.0	NM_008906	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152214276-3	chr4	152213763	152214763	+	821.116638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133348, intron 2 of 8)	intron (NM_133348, intron 2 of 8)	14419.0	NM_001146058	70025.0	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-96161085-3	chr5	96160582	96161582	+	821.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144910, intron 1 of 11)	CpG	465.0	NM_001285511	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6339935-3	chr15	6339431	6340431	+	821.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	40142.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-77358536-3	chr5	77358032	77359032	+	821.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008048, intron 1 of 4)	intron (NM_008048, intron 1 of 4)	48048.0	NM_153798	231329.0	Mm.273217	NM_153798	ENSMUSG00000029250	Polr2b	Pol2rb|Rpb140|Rpb2	polymerase (RNA) II (DNA directed) polypeptide B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100983895-2	chr15	100983395	100984395	+	821.099976	f1_balb.idr|f1_c57bl6.idr	exon (NM_011323, exon 11 of 26)	exon (NM_011323, exon 11 of 26)	47624.0	NM_011323	20273.0	Mm.385012	NM_011323	ENSMUSG00000023033	Scn8a	AI853486|C630029C19Rik|NaCh6|Nav1.6|dmu|med|mnd-2|mnd2|nmf2|nmf335|nmf58|nur14|seal	sodium channel, voltage-gated, type VIII, alpha	protein-coding	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr2-69109438-4	chr2	69108926	69109926	+	821.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172856, exon 10 of 10)	3' UTR (NM_172856, exon 10 of 10)	-26374.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-109486485-4	chr7	109485972	109486972	+	821.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181853, intron 1 of 19)	intron (NM_181853, intron 1 of 19)	7266.0	NM_001170913	330627.0	Mm.183528	NM_181853	ENSMUSG00000031026	Trim66	Kiaa0298-hp|Tif1d	tripartite motif-containing 66	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-53626195-3	chr7	53625689	53626689	+	821.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	265700.0	NR_105746	102466619.0		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38339565-3	chr18	38339085	38340085	+	821.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011937)	promoter-TSS (NM_011937)	-592.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64734879-3	chr9	64734427	64735427	+	821.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017382, intron 1 of 4)	intron (NM_017382, intron 1 of 4)	2829.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72492045-8	chr8	72491580	72492580	+	821.03125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177766, intron 1 of 5)	CpG	534.0	NM_177766	270066.0	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	15.0	92.0	55.5	33.0	50.5	44.5
Merged-chr5-23453718-3	chr5	23453212	23454212	+	821.022217	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026984, intron 2 of 25)	B2_Mm2|SINE|B2	19283.0	NM_026984	69188.0	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105285748-1	chr4	105285248	105286248	+	821.0	f1_balb.idr	Intergenic	Intergenic	128401.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	5.0	5.5	8.0	0.0	0.0	6.0
Merged-chr6-72186016-2	chr6	72185516	72186516	+	821.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49561.0	NM_153778	71093.0	Mm.87449	NM_153778	ENSMUSG00000037621	Atoh8	4933425C05Rik|Hath6|Math6|bHLHa21|okadin	atonal bHLH transcription factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-57417018-1	chr14	57416518	57417518	+	821.0	f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-7053.0	NM_009376	21821.0	Mm.4653	NM_009376	ENSMUSG00000040040	Ift88	AW552028|Tg737|Tg737Rpw|TgN737Rpw|Ttc10|flexo|fxo|orpk|polaris	intraflagellar transport 88	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-129983225-1	chr5	129982725	129983725	+	821.0	f1_c57bl6.idr	3' UTR (NM_001001327, exon 2 of 2)	3' UTR (NM_001001327, exon 2 of 2)	19824.0	NM_010368	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr10-80134329-2	chr10	80133829	80134829	+	821.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_036582, intron 9 of 10)	intron (NR_036582, intron 9 of 10)	3058.0	NM_001195268	100503659.0	Mm.485395	NM_015761	ENSMUSG00000035640	Cbarp	9630008F14|Dos|R29144/1	calcium channel, voltage-dependent, beta subunit associated regulatory protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77100372-3	chr11	77099910	77100910	+	821.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176965, intron 17 of 17)	intron (NM_176965, intron 17 of 17)	-21973.0	NM_001012309	237859.0	Mm.156195	NM_001012309	ENSMUSG00000037958	Nsrp1	8030451K07|AI851076|AL022898|Ccdc55|NSpr70|NSrp70	nuclear speckle regulatory protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-74942746-2	chr5	74942246	74943246	+	821.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6448.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-100415595-2	chr6	100415095	100416095	+	821.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111805.0	NR_040525	73395.0	Mm.69413	NR_040525	ENSMUSG00000101553	1700049E22Rik	-	RIKEN cDNA 1700049E22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-135297346-1	chr6	135296846	135297846	+	821.0	f1_c57bl6.idr	Intergenic	Intergenic	13038.0	NM_029595	76400.0	Mm.293018	NM_029595	ENSMUSG00000047104	Pbp2	1700023A18Rik|AI326308|Pebp-2|Pebp2	phosphatidylethanolamine binding protein 2	protein-coding	17.5	31.0	33.5	32.0	59.0	97.5
Merged-chr8-119790623-2	chr8	119790123	119791123	+	821.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12207.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116332319-2	chr11	116331819	116332819	+	821.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008240, exon 3 of 3)	exon (NM_008240, exon 3 of 3)	3035.0	NM_008240	15223.0	Mm.378938	NM_008240	ENSMUSG00000034227	Foxj1	FKHL-13|HFH-4|Hfh4	forkhead box J1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96562614-4	chr3	96562123	96563123	+	821.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023719)	TTS (NM_023719)	4178.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	10.0	22.5	10.0	10.5	38.0	5.0
Merged-chr8-109776337-2	chr8	109775837	109776837	+	821.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2246.0	NM_009677	11765.0	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-147671968-1	chr3	147671468	147672468	+	821.0	f1_c57bl6.idr	Intergenic	RMER21B|LTR|ERV1	819601.0	NM_001302957	70892.0	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138517166-3	chr1	138516677	138517677	+	821.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 5 of 9)	ID_B1|SINE|B4	102580.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79686606-2	chr15	79686106	79687106	+	821.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028792, intron 1 of 3)	intron (NM_028792, intron 1 of 3)	1266.0	NM_028792	74158.0	Mm.323393	NM_028792	ENSMUSG00000022426	Josd1	1300006C06Rik|mKIAA0063	Josephin domain containing 1	protein-coding	4.0	2.0	1.5	4.0	2.0	1.5
Merged-chr7-73439387-2	chr7	73438887	73439887	+	821.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 37 of 38)	ORR1B1|LTR|ERVL-MaLR	-63613.0	NR_040324	319783.0	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3837505-1	chr19	3837005	3838005	+	821.0	f1_balb.idr	Intergenic	Intergenic	-14268.0	NM_001271496	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0.0	2.0	4.5	0.0	0.0	0.0
Merged-chr4-48109304-1	chr4	48108804	48109804	+	821.0	f0_balb.idr	Intergenic	Intergenic	-15615.0	NM_026343	67727.0	Mm.171334	NM_026343	ENSMUSG00000061455	Stx17	4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351	syntaxin 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122884276-2	chr8	122883776	122884776	+	821.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037865, exon 14 of 14)	non-coding (NR_037865, exon 14 of 14)	35902.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152478551-2	chr4	152478051	152479051	+	821.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153424, intron 1 of 29)	intron (NM_153424, intron 1 of 29)	409.0	NM_153424	260305.0	Mm.302496	NM_153424	ENSMUSG00000039577	Nphp4	4930564O18Rik|nmf192	nephronophthisis 4 (juvenile) homolog (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-11267131-2	chr12	11266631	11267631	+	821.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361252, intron 1 of 9)	intron (NM_001361252, intron 1 of 9)	1245.0	NM_025695	67241.0	Mm.173953	NM_025695	ENSMUSG00000020608	Smc6	2810489L22Rik|3830418C19Rik|AA990493|AU018782|AW742439|SMC-6|Smc6l1|mKIAA4103	structural maintenance of chromosomes 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-53841442-2	chr1	53840943	53841943	+	821.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 21 of 28)	intron (NM_001001883, intron 21 of 28)	-7981.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	4.0	8.5	15.5	4.5	14.0	12.0
Merged-chr19-11765668-2	chr19	11765133	11766133	+	821.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4782.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	6.5	10.5	2.0	10.0	4.5	3.0
Merged-chr14-61648359-4	chr14	61647864	61648864	+	821.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	CpG	-16254.0	NR_029733	387174.0		NR_029733	ENSMUSG00000093007	Mir15a	Mirn15a|mir-15a|mmu-mir-15a	microRNA 15a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-51721935-1	chr18	51721435	51722435	+	821.0	f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	401611.0	NR_029788	723830.0		NR_029788	ENSMUSG00000065494	Mir28a	Mir28|Mirn28|mmu-mir-28|mmu-mir-28a	microRNA 28a	ncRNA	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr7-81843921-2	chr7	81843408	81844408	+	821.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-14477.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	21.0	34.5	44.0	10.5	21.5	17.0
Merged-chr10-81461749-2	chr10	81461249	81462249	+	821.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001311127, exon 11 of 11)	3' UTR (NM_001311127, exon 11 of 11)	11382.0	NM_001311127	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129541283-2	chr4	129540786	129541786	+	821.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008228, intron 1 of 13)	intron (NM_008228, intron 1 of 13)	1360.0	NM_008228	433759.0	Mm.202504	NM_008228	ENSMUSG00000028800	Hdac1	HD1|Hdac1-ps|MommeD5|RPD3	histone deacetylase 1	protein-coding	18.0	18.0	13.5	8.0	11.5	12.0
Merged-chr16-23423532-2	chr16	23423032	23424032	+	821.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	7SK|RNA|RNA	-5601.0	NM_001004151	239766.0	Mm.208751	NM_001004151	ENSMUSG00000033383	Rtp1	Gm1766|Gm604	receptor transporter protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36464166-2	chr5	36463666	36464666	+	821.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_126490, intron 1 of 1)	RMER5|LTR|ERV1	688.0	NR_126490	76710.0	Mm.165495	NR_126488	ENSMUSG00000039563	2210406O10Rik	-	RIKEN cDNA 2210406O10 gene	ncRNA	2.5	2.5	1.5	0.0	0.0	1.0
Merged-chr17-21531611-2	chr17	21531111	21532111	+	821.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_131123, intron 2 of 2)	intron (NR_131123, intron 2 of 2)	-3928.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	2.0	1.5	1.0	10.5	4.0	2.5
Merged-chr10-127542132-1	chr10	127541632	127542632	+	821.0	f1_balb.idr	intron (NM_008512, intron 79 of 88)	intron (NM_008512, intron 79 of 88)	-7573.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	1.0	2.5	0.0	2.0	0.0	2.5
Merged-chr17-81666771-2	chr17	81666271	81667271	+	821.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	71616.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91754036-2	chr6	91753536	91754536	+	821.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 14 of 14)	intron (NM_009320, intron 14 of 14)	53357.0	NM_001159507	243547.0	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89873069-2	chr3	89872569	89873569	+	821.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 9 of 9)	ORR1C2|LTR|ERVL-MaLR	40127.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135418042-2	chr3	135417542	135418542	+	821.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025902, intron 1 of 2)	intron (NM_025902, intron 1 of 2)	5391.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-22061370-3	chr3	22060876	22061876	+	821.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15276.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120977224-1	chr7	120976724	120977724	+	821.0	f0_balb.idr	intron (NM_001354986, intron 1 of 4)	intron (NM_001354986, intron 1 of 4)	5088.0	NM_007672	12585.0	Mm.1640	NM_007672	ENSMUSG00000030878	Cdr2	AA617262	cerebellar degeneration-related 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131036915-2	chr2	131036413	131037413	+	821.0	f0_balb.idr|f1_balb.idr	Intergenic	RMER15|LTR|ERVL	3485.0	NR_105969	102465606.0		NR_105969	ENSMUSG00000098686	Mir6973b	Gm27815|mmu-mir-6973b	microRNA 6973b	ncRNA	19.0	23.5	28.0	14.0	44.0	32.0
Merged-chr17-33918380-2	chr17	33917880	33918880	+	821.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_020625, exon 2 of 2)	exon (NM_020625, exon 2 of 2)	-1098.0	NM_001025313	21356.0	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117880401-2	chr11	117879901	117880901	+	821.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6875.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85480801-4	chr12	85480284	85481284	+	820.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6894.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76805988-4	chr15	76805485	76806485	+	820.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	L1M4|LINE|L1	12185.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61193591-3	chr11	61193093	61194093	+	820.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15149.0	NM_007436	11670.0	Mm.4257	NM_007436	ENSMUSG00000019102	Aldh3a1	Ahd-4|Ahd4|Aldh|Aldh3	aldehyde dehydrogenase family 3, subfamily A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-23419160-3	chr1	23418645	23419645	+	820.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35970.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-21265799-3	chr12	21265297	21266297	+	820.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004364, intron 25 of 26)	intron (NM_001004364, intron 25 of 26)	20487.0	NM_008403	16413.0	Mm.273333	NM_008403	ENSMUSG00000062352	Itgb1bp1	AI449260|AU019480|Icap1	integrin beta 1 binding protein 1	protein-coding	1.5	2.5	11.5	1.0	15.5	3.0
Merged-chr3-101003939-5	chr3	101003452	101004452	+	820.9023440000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167906, intron 7 of 8)	intron (NM_001167906, intron 7 of 8)	25543.0	NM_001167906	630146.0	Mm.190915	NM_001099332	ENSMUSG00000086564	Cd101	EWI-101|Gm1016|Gm734|Igsf2	CD101 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164926974-3	chr2	164926487	164927487	+	820.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15237.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	1.5	2.0	2.5	3.5	1.5	4.5
Merged-chr5-143472894-3	chr5	143472400	143473400	+	820.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 2 of 14)	intron (NM_144915, intron 2 of 14)	8407.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145090249-4	chr7	145089752	145090752	+	820.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117867.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	0.0	4.0	3.0	0.0	5.5	4.5
Merged-chr7-46393444-2	chr7	46392944	46393944	+	820.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3024.0	NM_008421	16502.0	Mm.249386	NM_008421	ENSMUSG00000058975	Kcnc1	C230009H10Rik|KShIIIB|KV4|Kcr2-1|Kv3.1|NGK2|Shaw	potassium voltage gated channel, Shaw-related subfamily, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67088777-3	chr15	67088269	67089269	+	820.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88113.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0.5	7.0	1.0	9.5	12.0	12.0
Merged-chr10-117146778-2	chr10	117146278	117147278	+	820.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177798, intron 1 of 9)	B4A|SINE|B4	1696.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69992747-2	chr11	69992247	69993247	+	820.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019749, intron 3 of 3)	intron (NM_019749, intron 3 of 3)	1377.0	NM_019749	56486.0	Mm.272460	NM_019749	ENSMUSG00000018567	Gabarap	-	gamma-aminobutyric acid receptor associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119887327-2	chr8	119886827	119887827	+	820.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-23033.0	NM_009462	22224.0	Mm.256910	NM_009462	ENSMUSG00000031826	Usp10	2610014N07Rik|UBPO|Uchrp|mKIAA0190	ubiquitin specific peptidase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80163977-2	chr10	80163477	80164477	+	820.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-3862.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-31914644-3	chr18	31914138	31915138	+	820.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2735.0	NM_026006	67158.0	Mm.31537	NM_026006	ENSMUSG00000044982	Sft2d3	2610206C24Rik|AI847965|AW046173	SFT2 domain containing 3	protein-coding	0.0	1.0	1.0	2.5	1.0	0.0
Merged-chr11-115691253-3	chr11	115690752	115691752	+	820.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	8282.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84790537-2	chr10	84790037	84791037	+	820.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024918, intron 2 of 17)	intron (NM_001024918, intron 2 of 17)	34489.0	NM_001024918	71137.0	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109124809-3	chr4	109124312	109125312	+	820.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355190, intron 2 of 21)	MTE2a|LTR|ERVL-MaLR	-6776.0	NM_001134791	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	3.5	8.0	10.5	3.5	8.0	10.5
Merged-chr19-55789332-4	chr19	55788827	55789827	+	820.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	47517.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	1.5	0.0	6.5	3.5	0.0	2.5
Merged-chr2-17740457-4	chr2	17739950	17740950	+	820.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9382.0	NM_028757	74103.0	Mm.120298	NM_028757	ENSMUSG00000053702	Nebl	1200007O21Rik|A630080F05Rik|BB140644|D830029A09Rik|Lnebl	nebulette	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64626547-3	chr5	64626047	64627047	+	820.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15848.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	8.0	8.5	6.5	6.5	4.0	2.5
Merged-chr9-3002555-7	chr9	3002072	3003072	+	820.761902	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	36171.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35168960-4	chr17	35168459	35169459	+	820.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4082.0	NM_020027	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	1.5	15.0	4.0	7.0	10.0	6.0
Merged-chr17-36058499-1	chr17	36057999	36058999	+	820.75	f0_balb.idr	promoter-TSS (NM_001199967)	promoter-TSS (NM_001199967)	-128.0	NM_001199967	100529082.0	Mm.484641	NM_001199967	ENSMUSG00000079492	Gm11127	-	predicted gene 11127	protein-coding	8.5	0.0	0.5	2.5	5.0	2.5
Merged-chr12-119356916-4	chr12	119356426	119357426	+	820.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86484.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-103644363-3	chr5	103643856	103644856	+	820.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	11368.0	NM_028824	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-93518453-2	chr15	93517953	93518953	+	820.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033217, intron 1 of 7)	intron (NM_001033217, intron 1 of 7)	77438.0	NM_001033217	106042.0	Mm.150314	NM_001033217	ENSMUSG00000036158	Prickle1	1110058P22Rik|AW215793|Prickle|b2b019Clo|mpk1	prickle planar cell polarity protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80114224-2	chr10	80113724	80114724	+	820.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-1579.0	NM_001301853	20869.0	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-22772787-2	chr2	22772287	22773287	+	820.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1540.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13733804-3	chr16	13733288	13734288	+	820.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040574, intron 1 of 2)	intron (NR_040574, intron 1 of 2)	-3304.0	NM_011987	26565.0	Mm.4214	NM_011987	ENSMUSG00000022683	Pla2g10	GX sPLA2|PLA2GX|sPLA2-X	phospholipase A2, group X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96569326-4	chr15	96568788	96569788	+	820.729187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72674.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-61031922-1	chr19	61031422	61032422	+	820.666687	f0_balb.idr	intron (NM_018869, intron 3 of 15)	(T)n|Simple_repeat|Simple_repeat	108918.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	0.5	4.0	4.5	8.0	13.5	10.5
Merged-chr11-103055010-3	chr11	103054512	103055512	+	820.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008707, intron 4 of 11)	intron (NM_008707, intron 4 of 11)	25936.0	NM_001361706	72469.0	Mm.264743	NM_152813	ENSMUSG00000020937	Plcd3	2610205J15Rik|mKIAA1964	phospholipase C, delta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30839990-4	chr5	30839495	30840495	+	820.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133350, intron 1 of 6)	intron (NM_133350, intron 1 of 6)	-21812.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-112103140-4	chr7	112102656	112103656	+	820.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133758, intron 22 of 27)	intron (NM_133758, intron 22 of 27)	55540.0	NM_001360260	50781.0	Mm.55143	NM_015814	ENSMUSG00000030772	Dkk3	AW061014|C87148|dkk-3|mDkk-3	dickkopf WNT signaling pathway inhibitor 3	protein-coding	0.0	1.0	0.0	6.5	0.5	1.5
Merged-chr11-54257160-3	chr11	54256667	54257667	+	820.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7268.0	NM_009969	12981.0	Mm.4922	NM_009969	ENSMUSG00000018916	Csf2	CSF|Csfgm|GMCSF|Gm-CSf|MGI-IGM	colony stimulating factor 2 (granulocyte-macrophage)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84845055-4	chr15	84844527	84845527	+	820.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356573, intron 2 of 12)	intron (NM_001356573, intron 2 of 12)	10072.0	NM_001356573	271305.0	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84726063-3	chr8	84725566	84726566	+	820.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081982, intron 6 of 9)	PB1D10|SINE|Alu	24609.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	3.0	18.5	13.0	17.5	33.5	14.5
Merged-chr3-37656354-3	chr3	37655834	37656834	+	820.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16387.0	NM_011896	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95140695-4	chr3	95140176	95141176	+	820.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027206, intron 1 of 1)	intron (NM_027206, intron 1 of 1)	-1490.0	NR_106175	102465890.0		NR_106175	ENSMUSG00000098498	Mir8099-1	Gm27917|mmu-mir-8099-1	microRNA 8099-1	ncRNA	23.5	53.5	44.5	14.5	42.5	38.0
Merged-chr16-55964571-3	chr16	55964019	55965019	+	820.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1756.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-100545341-3	chr9	100544836	100545836	+	820.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010878, intron 1 of 3)	intron (NM_010878, intron 1 of 3)	798.0	NM_010878	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	10.0	0.0	7.5	2.0	5.5	13.0
Merged-chr11-88949933-2	chr11	88949417	88950417	+	820.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029023, intron 2 of 12)	intron (NM_029023, intron 2 of 12)	5525.0	NM_029023	74617.0	Mm.34126	NM_029023	ENSMUSG00000000278	Scpep1	2410018F01Rik|4833411K15Rik|AI957256|Risc	serine carboxypeptidase 1	protein-coding	24.0	71.0	41.0	25.5	70.0	77.5
Merged-chr5-18037496-2	chr5	18036996	18037996	+	820.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	74926.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-94711573-2	chr1	94711073	94712073	+	820.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85869.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46448524-2	chr18	46448024	46449024	+	820.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	17292.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56531806-2	chr19	56531306	56532306	+	820.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_153440, intron 8 of 9)	intron (NR_153440, intron 8 of 9)	16316.0	NM_001360437	55947.0	Mm.2805	NM_018831	ENSMUSG00000025077	Dclre1a	2810043H12Rik|AU022226|Pso2|Smn1a|Snm1|mKIAA0086	DNA cross-link repair 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126887494-3	chr8	126887067	126888067	+	820.6611330000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38547.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	3.0	4.5	1.0	6.5	2.5	1.0
Merged-chr11-35091101-3	chr11	35090589	35091589	+	820.6444700000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30367.0	NM_011412	20564.0	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit guidance ligand 3	protein-coding	0.5	0.0	1.5	0.5	0.0	0.0
Merged-chr19-56811713-4	chr19	56811195	56812195	+	820.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170757, intron 1 of 14)	intron (NM_170757, intron 1 of 14)	1988.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25225034-4	chr8	25224541	25225541	+	820.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23499.0	NM_177089	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89714513-3	chr3	89714016	89715016	+	820.611145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357958)	promoter-TSS (NM_001357958)	-506.0	NM_001038587	56417.0	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|DRADA|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20240519-6	chr11	20239936	20240936	+	820.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172260, exon 3 of 7)	exon (NM_172260, exon 3 of 7)	8988.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	6.0	20.0	21.5	8.0	10.5	9.0
Merged-chr10-93310316-4	chr10	93309806	93310806	+	820.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001322265, intron 1 of 4)	CpG	853.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	7.0	12.5	29.5	48.0	151.5	127.0
Merged-chr5-117358954-2	chr5	117358437	117359437	+	820.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_021539, intron 1 of 8)	B3|SINE|B2	1632.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	1.0	1.0	9.0	2.0	7.0	7.0
Merged-chr2-168197771-3	chr2	168197274	168198274	+	820.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132310, intron 9 of 11)	intron (NR_132310, intron 9 of 11)	9338.0	NM_009628	11538.0	Mm.201322	NM_009628	ENSMUSG00000051149	Adnp	AA589558|mKIAA0784	activity-dependent neuroprotective protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115156964-3	chr11	115156427	115157427	+	820.583313	f1_balb.idr|f1_c57bl6.idr	exon (NM_021411, exon 2 of 9)	exon (NM_021411, exon 2 of 9)	2749.0	NM_021411	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr2-27281158-4	chr2	27280669	27281669	+	820.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 18 of 29)	intron (NR_133905, intron 18 of 29)	-33866.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107566228-4	chr9	107565720	107566720	+	820.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019742)	TTS (NM_019742)	-2943.0	NM_010489	15587.0	Mm.4834	NM_010489	ENSMUSG00000010047	Hyal2	AI256841|AU020858|AW555733	hyaluronoglucosaminidase 2	protein-coding	28.5	34.0	28.5	18.5	30.5	37.0
Merged-chr2-180170786-2	chr2	180170286	180171286	+	820.575012	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019822)	promoter-TSS (NM_019822)	-802.0	NM_019822	56436.0	Mm.316654	NM_019822	ENSMUSG00000039041	Adrm1	1110063P18Rik|2510006J17Rik|AA408205|ARM-1|AU043535|Arm1|Gp110|Rpn13	adhesion regulating molecule 1	protein-coding	0.5	13.5	2.5	2.5	9.5	6.0
Merged-chr5-81021136-5	chr5	81020680	81021680	+	820.565735	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198702)	promoter-TSS (NM_198702)	-413.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	2.5	2.0	2.5	0.0	1.0	0.0
Merged-chr3-103335593-3	chr3	103335079	103336079	+	820.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079830, intron 11 of 18)	intron (NM_001079830, intron 11 of 18)	56286.0	NM_053170	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	3.5	6.0	4.5	12.0	1.0	4.5
Merged-chr9-116088962-3	chr9	116088462	116089462	+	820.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009371, exon 8 of 8)	3' UTR (NM_009371, exon 8 of 8)	86401.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	1.5	5.0	1.5	3.5	2.5	6.5
Merged-chr15-35293149-4	chr15	35292677	35293677	+	820.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2935.0	NM_054049	107587.0	Mm.46336	NM_054049	ENSMUSG00000022330	Osr2	5430409I15Rik|Osr2A|Osr2B	odd-skipped related 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128213111-6	chr10	128212634	128213634	+	820.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1340.0	NM_025716	66701.0	Mm.29694	NM_025716	ENSMUSG00000051346	Spryd4	4633402N23Rik|AA114801	SPRY domain containing 4	protein-coding	1.5	9.5	10.0	0.0	2.5	1.5
Merged-chr15-24621649-4	chr15	24621153	24622153	+	820.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	792111.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105293228-2	chr8	105292683	105293683	+	820.541626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357379, intron 4 of 12)	intron (NM_001357379, intron 4 of 12)	2930.0	NM_001357379	277978.0	Mm.40228	NM_177788	ENSMUSG00000043251	Exoc3l	C730015A04Rik|Exoc3l1	exocyst complex component 3-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43820377-4	chr4	43819873	43820873	+	820.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019474)	TTS (NM_019474)	1060.0	NM_019474	29846.0	Mm.377121	NM_019474	ENSMUSG00000110970	Olfr156	MOR262-6|OR37B|Olfr37b|mOR37b	olfactory receptor 156	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27600419-2	chr3	27599919	27600919	+	820.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 4 of 26)	intron (NM_001356953, intron 4 of 26)	-15424.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70135382-2	chr14	70134882	70135882	+	820.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021328, intron 8 of 8)	intron (NM_021328, intron 8 of 8)	18409.0	NM_146055	219158.0	Mm.218284	NM_146055	ENSMUSG00000033712	Ccar2	2610301G19Rik|Dbc1|mKIAA1967	cell cycle activator and apoptosis regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-94477163-4	chr4	94476677	94477677	+	820.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	79619.0	NM_026368	67770.0	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	1.5	5.0	13.0	0.0	2.0	2.0
Merged-chr6-98525455-3	chr6	98524969	98525969	+	820.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-182715.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142057024-4	chr7	142056541	142057541	+	820.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357705, intron 1 of 4)	intron (NM_001357705, intron 1 of 4)	3812.0	NM_001347560	101513.0	Mm.53259	NM_028308	ENSMUSG00000025147	Mob2	1110017M21Rik|2700078K21Rik|AI256456|Mmh	MOB kinase activator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13502494-2	chr10	13501994	13502994	+	820.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025799, intron 1 of 6)	intron (NM_025799, intron 1 of 6)	1466.0	NM_025799	66848.0	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112731336-2	chr12	112730836	112731836	+	820.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024602, intron 2 of 18)	intron (NM_001024602, intron 2 of 18)	-1986.0	NR_105905	102466989.0		NR_105905	ENSMUSG00000099165	Mir6940	Gm27655|mmu-mir-6940	microRNA 6940	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38560114-4	chr16	38559619	38560619	+	820.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205286, intron 1 of 8)	ID_B1|SINE|B4	1421.0	NM_001205286	67846.0	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr16-83731989-2	chr16	83731489	83732489	+	820.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-639154.0	NR_040567	75247.0	Mm.417813	NR_040567		4930553E22Rik	-	RIKEN cDNA 4930553E22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-157443896-3	chr1	157443359	157444359	+	820.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14709.0	NM_001356418	226527.0	Mm.215960	NM_001033284	ENSMUSG00000033488	Cryzl2	-	crystallin zeta like 2	protein-coding	12.0	17.5	12.5	26.0	47.5	42.0
Merged-chr11-85671301-3	chr11	85670792	85671792	+	820.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	48452.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81287234-2	chr10	81286734	81287734	+	820.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282095, intron 1 of 20)	intron (NM_001282095, intron 1 of 20)	-1453.0	NM_001282096	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103236313-2	chr15	103235813	103236813	+	820.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358950, intron 1 of 4)	intron (NM_001358950, intron 1 of 4)	3539.0	NM_001358950	12419.0	Mm.262059	NM_007626	ENSMUSG00000009575	Cbx5	2610029O15Rik|C75991|HP1|Hp1a|Hp1alpha	chromobox 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-82969071-2	chr17	82968571	82969571	+	820.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	109154.0	NR_045094	100503434.0	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-99109954-2	chr2	99109454	99110454	+	820.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	1642297.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.0	6.0	0.0	0.0	2.0	0.0
Merged-chr3-116425507-2	chr3	116425007	116426007	+	820.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1475.0	NM_001173553	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52084354-2	chr2	52083854	52084854	+	820.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355414, intron 9 of 35)	intron (NM_001355414, intron 9 of 35)	11517.0	NM_175238	51869.0	Mm.254530	NM_175238	ENSMUSG00000036202	Rif1	5730435J01Rik|6530403D07Rik|AU016181|AW549474|D2Ertd145e	replication timing regulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3695110-2	chr7	3694610	3695610	+	820.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164205, exon 3 of 5)	exon (NM_001164205, exon 3 of 5)	602.0	NM_024168	66078.0	Mm.379100	NM_024168	ENSMUSG00000035585	Tsen34	0610027F08Rik|Leng5	tRNA splicing endonuclease subunit 34	protein-coding	13.0	34.0	26.0	0.5	24.5	16.0
Merged-chr3-95239775-2	chr3	95239275	95240275	+	820.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024841, intron 1 of 1)	intron (NM_001024841, intron 1 of 1)	1334.0	NM_001024841	229588.0	Mm.387177	NM_001024841	ENSMUSG00000068860	Gm128	Ment|pmis1	predicted gene 128	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110246455-2	chr9	110245955	110246955	+	820.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001166273, exon 2 of 5)	exon (NM_001166273, exon 2 of 5)	2672.0	NM_013884	29873.0	Mm.38496	NM_013884	ENSMUSG00000032482	Cspg5	Caleb|Ngc	chondroitin sulfate proteoglycan 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-97196351-2	chr13	97195851	97196851	+	820.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010422, intron 1 of 13)	intron (NM_010422, intron 1 of 13)	2006.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108446380-2	chr3	108445880	108446880	+	820.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-1121.0	NM_001204979	20226.0	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-40513717-2	chr8	40513213	40514213	+	820.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033560, intron 1 of 11)	intron (NM_033560, intron 1 of 11)	1930.0	NM_033560	52348.0	Mm.489696	NM_033560	ENSMUSG00000031600	Vps37a	2210018P21Rik|4930592A21Rik|AW261445|D8Ertd531e	vacuolar protein sorting 37A	protein-coding	1.5	1.0	5.5	0.0	10.5	6.0
Merged-chr14-44987074-2	chr14	44986574	44987574	+	820.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER115|DNA|hAT-Tip100	-1037.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54786099-4	chr14	54785605	54786605	+	820.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4219.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	0.5	1.5	0.0	6.5	0.0	0.0
Merged-chr6-108127890-4	chr6	108127370	108128370	+	820.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145937, intron 7 of 8)	intron (NM_145937, intron 7 of 8)	57713.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr7-80017230-2	chr7	80016730	80017730	+	820.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7584.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166564744-4	chr2	166564319	166565319	+	820.491638	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152154, exon 1 of 2)	non-coding (NR_152154, exon 1 of 2)	297.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-93032850-3	chr5	93032362	93033362	+	820.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	12160.0	NM_175270	78088.0	Mm.245085	NM_175270	ENSMUSG00000045314	Sowahb	5730467H21Rik|Ankrd56	sosondowah ankyrin repeat domain family member B	protein-coding	1.0	4.0	1.5	8.5	3.5	5.5
Merged-chr1-36065629-3	chr1	36065201	36066201	+	820.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2699.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90415207-3	chr5	90414729	90415729	+	820.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45641.0	NM_009654	11657.0	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-63940483-3	chr7	63939973	63940973	+	820.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1558.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	2.0	16.5	2.0	3.0	5.5	0.5
Merged-chr2-156311008-3	chr2	156310490	156311490	+	820.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_020255)	TTS (NM_020255)	-1483.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	54.0	223.0	130.0	40.5	111.5	87.5
Merged-chr15-36167893-4	chr15	36167413	36168413	+	820.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3029.0	NM_001081253	78803.0	Mm.26393	NM_175281	ENSMUSG00000048230	Fbxo43	4930533G20Rik|Emi2	F-box protein 43	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-15289124-4	chr4	15288625	15289625	+	820.391663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23305.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	0.0	0.0	0.0	2.5	0.0	1.5
Merged-chr15-74925102-5	chr15	74924692	74925692	+	820.3905030000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29859.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	68.5	170.0	112.5	54.0	138.5	130.5
Merged-chr4-45523071-3	chr4	45522515	45523515	+	820.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 1 of 5)	MER58A|DNA|hAT-Charlie	7813.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-98844090-3	chr3	98843573	98844573	+	820.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15721.0	NM_001304800	15492.0	Mm.140811	NM_008293	ENSMUSG00000027871	Hsd3b1	3-beta-HSD I|D3Ertd383e	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81426578-2	chr10	81426078	81427078	+	820.383301	f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 1 of 8)	intron (NM_026756, intron 1 of 8)	595.0	NM_008688	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32834679-4	chr2	32834158	32835158	+	820.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113569, intron 1 of 19)	intron (NM_001113569, intron 1 of 19)	12574.0	NM_009295	20910.0	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50479112-5	chr9	50478641	50479641	+	820.366638	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15384.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	0.0	2.0	1.0	0.0	3.5	1.0
Merged-chr11-115658863-4	chr11	115658474	115659474	+	820.363647	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	-30679.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160085484-2	chr2	160084984	160085984	+	820.333374	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	68831.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	57.5	59.5	60.0	75.0	121.5	84.0
Merged-chr7-143019089-2	chr7	143018589	143019589	+	820.333374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001128080, exon 9 of 9)	3' UTR (NM_001128080, exon 9 of 9)	13430.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr16-78375285-2	chr16	78374785	78375785	+	820.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001297747, intron 1 of 4)	intron (NM_001297747, intron 1 of 4)	1472.0	NR_002700	654432.0	Mm.458574	NR_002700	ENSMUSG00000044645	Gm7334	EG654432	B-cell translocation gene 3 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67116105-4	chr18	67115600	67116600	+	820.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177137, intron 1 of 11)	intron (NM_177137, intron 1 of 11)	-17460.0	NM_010307	14680.0	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding	2.5	4.0	6.0	3.0	12.5	8.5
Merged-chr8-126901908-3	chr8	126901409	126902409	+	820.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44012.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128396622-2	chr2	128396122	128397122	+	820.333313	f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	B4A|SINE|B4	32729.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106936817-3	chr8	106936258	106937258	+	820.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009229, intron 1 of 6)	intron (NM_009229, intron 1 of 6)	1008.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42914432-3	chr10	42913952	42914952	+	820.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359264, intron 2 of 7)	Charlie18a|DNA|hAT-Charlie	53940.0	NM_001359264	268297.0	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	Scm polycomb group protein like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33973609-4	chr2	33973103	33974103	+	820.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85657.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-5268130-5	chr12	5267560	5268560	+	820.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164493, intron 2 of 13)	intron (NM_001164493, intron 2 of 13)	107622.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-75401656-2	chr4	75401156	75402156	+	820.299988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123364.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100185538-3	chr12	100185208	100186208	+	820.2820429999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2260.0	NR_045282	100038378.0	Mm.387075	NR_045282	ENSMUSG00000072884	Gm10433	-	predicted gene 10433	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39944532-3	chr1	39944035	39945035	+	820.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 2 of 29)	intron (NM_001252202, intron 2 of 29)	43622.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27283046-2	chr2	27282546	27283546	+	820.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 16 of 29)	intron (NR_133905, intron 16 of 29)	-35743.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109458217-2	chr4	109457717	109458717	+	820.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_013876, intron 1 of 2)	intron (NM_013876, intron 1 of 2)	18288.0	NM_013876	29864.0	Mm.392580	NM_013876	ENSMUSG00000028557	Rnf11	-	ring finger protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64936689-4	chr9	64936193	64937193	+	820.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144813, intron 3 of 9)	intron (NM_144813, intron 3 of 9)	14914.0	NM_144813	214111.0	Mm.156124	NM_144813	ENSMUSG00000034452	Slc24a1	-	solute carrier family 24 (sodium/potassium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166995449-4	chr2	166994959	166995959	+	820.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109905, intron 1 of 11)	intron (NM_001109905, intron 1 of 11)	840.0	NM_011490	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73186879-6	chr15	73186238	73187238	+	820.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1791.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3718856-2	chr4	3718305	3719305	+	820.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	L1MC1|LINE|L1	3841.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	21.5	19.0	25.5	4.0	29.0	14.0
Merged-chr2-27692864-4	chr2	27692372	27693372	+	820.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	15671.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95693849-4	chr9	95693332	95694332	+	820.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 7 of 8)	intron (NM_029620, intron 7 of 8)	56204.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-108295362-4	chr4	108294848	108295848	+	820.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033634, intron 1 of 13)	intron (NM_001033634, intron 1 of 13)	5742.0	NM_001033634	414872.0	Mm.426241	NM_001033634	ENSMUSG00000034636	Zyg11b	1110046I03Rik|2810482G21Rik|D4Mgi23|Gm431|mKIAA1730	zyg-ll family member B, cell cycle regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120044879-3	chr1	120044378	120045378	+	820.233337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012322, intron 7 of 13)	intron (NM_001012322, intron 7 of 13)	28902.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	13.0	5.0	0.5	1.5	0.0	0.5
Merged-chr5-64341863-3	chr5	64341356	64342356	+	820.222229	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_001289514, intron 17 of 18)	L1ME4c|LINE|L1	111499.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	106.0	221.5	164.5	49.5	109.0	66.5
Merged-chr1-189927860-3	chr1	189927355	189928355	+	820.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5564.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	4.0	0.0	1.0	8.0	0.0	0.5
Merged-chr1-90592973-3	chr1	90592496	90593496	+	820.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10429.0	NM_133805	108679.0	Mm.119177	NM_133805	ENSMUSG00000034432	Cops8	9430009J09Rik|AA408242|Csn8|Sgn8	COP9 signalosome subunit 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-11837060-4	chr18	11836566	11837566	+	820.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045421, intron 1 of 3)	intron (NR_045421, intron 1 of 3)	-2208.0	NM_001146287	63955.0	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	2.5	5.5	2.0	20.5	0.0	8.0
Merged-chr4-116991589-4	chr4	116991113	116992113	+	820.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009478, intron 7 of 9)	intron (NM_009478, intron 7 of 9)	2800.0	NM_009478	22275.0	Mm.46484	NM_009478	ENSMUSG00000028684	Urod	AI323803|UPD|Uro-d	uroporphyrinogen decarboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148592164-3	chr4	148591785	148592785	+	820.1904910000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009272, intron 2 of 6)	intron (NM_009272, intron 2 of 6)	772.0	NM_009272	20810.0	Mm.10	NM_009272	ENSMUSG00000006442	Srm	AA407669|SpdST|SpdSy	spermidine synthase	protein-coding	15.0	29.0	10.0	9.0	5.5	3.0
Merged-chr17-45620028-4	chr17	45619528	45620528	+	820.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17926.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43887515-3	chr5	43886990	43887990	+	820.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	18681.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-121247167-4	chr6	121246653	121247653	+	820.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011909, intron 1 of 10)	intron (NM_011909, intron 1 of 10)	1247.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	6.5	1.0	3.5	6.0	4.5	8.5
Merged-chr9-66916605-4	chr9	66916092	66917092	+	820.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	AmnSINE1|SINE|Deu	3113.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87529770-4	chr3	87529287	87530287	+	820.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359750, intron 4 of 4)	intron (NM_001359750, intron 4 of 4)	4209.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	4.5	1.0	11.5	8.0	3.5	18.5
Merged-chr9-57769517-2	chr9	57769017	57770017	+	820.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3657.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22895828-4	chr8	22895328	22896328	+	820.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081149, intron 3 of 17)	intron (NM_001081149, intron 3 of 17)	36289.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	5.5	5.0	12.0	5.5	5.0	12.5
Merged-chr9-113783919-4	chr9	113783426	113784426	+	820.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114347, intron 6 of 39)	intron (NM_001114347, intron 6 of 39)	-9404.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	1.5	0.0	5.5	3.0	6.5	13.5
Merged-chr11-94607621-2	chr11	94607121	94608121	+	820.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5835.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr12-84772103-6	chr12	84771562	84772562	+	820.138916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 1 of 3)	intron (NM_023409, intron 1 of 3)	1050.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113914451-4	chr13	113913960	113914960	+	820.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	119952.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35222452-4	chr17	35221960	35222960	+	820.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010909, intron 2 of 3)	intron (NM_010909, intron 2 of 3)	-12550.0	NM_001347351	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	25.5	51.5	33.5	10.0	13.5	14.5
Merged-chr2-32859320-3	chr2	32858829	32859829	+	820.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12092.0	NM_001113569	20910.0	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-57397760-3	chr14	57397247	57398247	+	820.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030004, intron 1 of 7)	intron (NM_030004, intron 1 of 7)	736.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11425915-3	chr2	11425321	11426321	+	820.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27321.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43131034-2	chr17	43130534	43131534	+	820.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27257.0	NR_045155	545207.0	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	2.0	0.0	0.0	0.0	0.0	5.0
Merged-chr10-8070281-4	chr10	8069778	8070778	+	820.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114155.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	13.5	11.0	13.5	3.5	13.5	6.5
Merged-chr14-121598854-3	chr14	121598330	121599330	+	820.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347596, intron 34 of 52)	intron (NM_001347596, intron 34 of 52)	-93576.0	NM_053079	56643.0	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	11.5	26.0	22.5	3.0	15.5	23.0
Merged-chr13-51850420-4	chr13	51849889	51850889	+	820.071411	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3714.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60809976-5	chr18	60809454	60810454	+	820.070251	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042605, intron 4 of 8)	intron (NM_001042605, intron 4 of 8)	-2122.0	NR_039567	100628611.0		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	9.5	40.0	27.0	17.5	17.0	33.0
Merged-chr7-16307515-3	chr7	16306977	16307977	+	820.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-2106.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	1.0	2.5	2.5	1.0	8.5	5.5
Merged-chr14-14602102-4	chr14	14601603	14602603	+	820.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100922.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	3.0	2.0	2.0	4.0	2.0	1.0
Merged-chr6-125082004-4	chr6	125081491	125082491	+	820.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163269, exon 2 of 2)	exon (NM_001163269, exon 2 of 2)	10714.0	NM_001163268	381810.0	Mm.333386	NM_001163268	ENSMUSG00000067714	Lpar5	GPR93|Gm1072|Gpr92|LPA5	lysophosphatidic acid receptor 5	protein-coding	5.0	0.0	0.0	0.0	2.0	0.0
Merged-chr6-113837957-4	chr6	113837470	113838470	+	820.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001036684, intron 2 of 19)	intron (NM_001036684, intron 2 of 19)	53569.0	NM_001036684	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100052307-2	chr12	100051807	100052807	+	820.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	-60024.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105269223-2	chr4	105268723	105269723	+	820.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111876.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17591433-1	chr12	17590933	17591933	+	820.0	f0_c57.idr	Intergenic	MYSERV-int|LTR|ERVK	46560.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	0.5	4.5	0.0	0.5	1.5	0.0
Merged-chr8-70795277-1	chr8	70794777	70795777	+	820.0	f1_c57bl6.idr	Intergenic	Intergenic	-2844.0	NM_199308	546071.0	Mm.250731	NM_199308	ENSMUSG00000031833	Mast3	BC024265|mKIAA0561	microtubule associated serine/threonine kinase 3	protein-coding	6.5	2.0	2.0	0.0	0.0	6.0
Merged-chr19-60873680-2	chr19	60873180	60874180	+	820.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007452, intron 1 of 6)	intron (NM_007452, intron 1 of 6)	858.0	NM_007452	11757.0	Mm.29821	NM_007452	ENSMUSG00000024997	Prdx3	AW822249|Aop1|D0Tohi1|Ef2l|Mer5|Prx3|SP22|TDXM	peroxiredoxin 3	protein-coding	5.5	1.0	0.0	0.0	5.5	0.5
Merged-chr3-121852211-1	chr3	121851711	121852711	+	820.0	f0_balb.idr	Intergenic	Intergenic	-36909.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-58214052-2	chr19	58213550	58214550	+	820.0	f0_balb.idr|f1_balb.idr	Intergenic	L1M4b|LINE|L1	-82154.0	NR_040449	791347.0	Mm.452208	NR_040449		Gm10007	-	predicted gene 10007	ncRNA	10.0	3.0	8.0	4.5	13.5	9.5
Merged-chr11-115766072-3	chr11	115765598	115766598	+	820.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028014, intron 1 of 31)	intron (NM_028014, intron 1 of 31)	665.0	NM_028014	71947.0	Mm.23168	NM_028014	ENSMUSG00000020747	Tmem94	2310067B10Rik|Kiaa0195|mKIAA0195	transmembrane protein 94	protein-coding	9.0	2.5	9.5	3.5	15.0	17.5
Merged-chr2-152653314-1	chr2	152652814	152653814	+	820.0	f0_balb.idr	Intergenic	Intergenic	-16147.0	NM_010376	14950.0	Mm.277327	NM_010376	ENSMUSG00000019188	H13	1200006O09Rik|4930443L17Rik|5031424B04Rik|AV020344|H-13|Hm13|PSL3|Spp	histocompatibility 13	protein-coding	1.0	3.0	1.5	2.0	13.5	6.0
Merged-chr3-154881746-2	chr3	154881227	154882227	+	820.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177066, intron 17 of 24)	ORR1D2|LTR|ERVL-MaLR	170594.0	NM_175176	209601.0	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding	9.0	9.0	10.0	0.0	5.0	3.0
Merged-chr15-98853978-2	chr15	98853478	98854478	+	820.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033276, intron 30 of 54)	intron (NM_001033276, intron 30 of 54)	17227.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100935579-2	chr11	100935079	100936079	+	820.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_213660, intron 1 of 23)	intron (NM_213660, intron 1 of 23)	3961.0	NM_213660	20848.0	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67271616-2	chr7	67271116	67272116	+	820.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357325, intron 4 of 11)	intron (NM_001357325, intron 4 of 11)	49000.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69888612-2	chr8	69888124	69889124	+	820.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001353930, intron 5 of 5)	intron (NM_001353930, intron 5 of 5)	-1232.0	NM_026818	68709.0	Mm.334584	NM_026818	ENSMUSG00000044006	Cilp2	1110031K21Rik|AA407300|CLIP-2	cartilage intermediate layer protein 2	protein-coding	0.0	1.5	1.0	9.0	4.0	0.0
Merged-chr2-143977971-2	chr2	143977471	143978471	+	820.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024281, intron 2 of 23)	intron (NM_024281, intron 2 of 23)	33292.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36667813-2	chr18	36667313	36668313	+	820.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028355, exon 3 of 4)	non-coding (NR_028355, exon 3 of 4)	2498.0	NM_001164406	24068.0	Mm.29058	NM_025291	ENSMUSG00000006050	Sra1	AA959952|Sra|Srap|Straa1|Strra1	steroid receptor RNA activator 1	protein-coding	0.0	5.0	0.0	1.0	2.0	0.0
Merged-chr7-17025807-2	chr7	17025307	17026307	+	820.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011155, intron 1 of 12)	intron (NM_011155, intron 1 of 12)	2107.0	NM_011155	19060.0	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	0.0	0.0	1.5	0.0	0.0	1.5
Merged-chr9-57437169-2	chr9	57436669	57437669	+	820.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152146, intron 2 of 5)	B3A|SINE|B2	2567.0	NM_001357913	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68726649-2	chr10	68726149	68727149	+	820.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	2903.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23759377-2	chr13	23758877	23759877	+	820.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1872.0	NM_178192	326619.0	Mm.228709	NM_178192	ENSMUSG00000060093	Hist1h4a	-	histone cluster 1, H4a	protein-coding	1.0	0.5	4.5	1.0	0.5	4.5
Merged-chr9-100459091-1	chr9	100458591	100459591	+	820.0	f1_c57bl6.idr	3' UTR (NM_001033543, exon 7 of 7)	3' UTR (NM_001033543, exon 7 of 7)	27382.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	14.0	61.0	43.0	28.0	66.5	55.5
Merged-chr1-178329220-4	chr1	178328710	178329710	+	820.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016805, exon 14 of 14)	3' UTR (NM_016805, exon 14 of 14)	8605.0	NM_016805	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-16574639-2	chr15	16574139	16575139	+	820.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-203462.0	NM_009869	12565.0	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86611119-2	chr4	86610619	86611619	+	820.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173400, intron 1 of 16)	B1_Mus1|SINE|Alu	936.0	NM_173400	230376.0	Mm.74730	NM_173400	ENSMUSG00000038047	Haus6	6230416J20Rik|9830144E06|D4Ertd27e|mKIAA1574	HAUS augmin-like complex, subunit 6	protein-coding	5.5	1.5	2.5	0.0	0.0	0.0
Merged-chr16-90281797-2	chr16	90281297	90282297	+	820.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346799, intron 1 of 19)	B1_Mus2|SINE|Alu	2689.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30428474-1	chr7	30427974	30428974	+	820.0	f1_c57bl6.idr	3' UTR (NM_001360906, exon 12 of 12)	3' UTR (NM_001360906, exon 12 of 12)	5199.0	NM_172142	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	17.0	14.0	7.0	7.5	17.0	3.5
Merged-chr1-92473157-2	chr1	92472657	92473657	+	820.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024197, intron 1 of 9)	intron (NM_024197, intron 1 of 9)	601.0	NM_024197	67273.0	Mm.248778	NM_024197	ENSMUSG00000026260	Ndufa10	2900053E13Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-116291735-2	chr10	116291235	116292235	+	820.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9639.0	NM_029928	19263.0	Mm.37213	NM_029928	ENSMUSG00000020154	Ptprb	3230402H02Rik|C130094E24|Ptpz|Rptpb|VE-PTP|Veptp	protein tyrosine phosphatase, receptor type, B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-46176007-1	chr14	46175507	46176507	+	820.0	f0_balb.idr	Intergenic	Intergenic	91980.0	NR_002875	218963.0	Mm.282093	NR_002875		Gm1821	-	ubiquitin pseudogene	pseudo	0.5	0.0	5.0	18.0	4.0	9.0
Merged-chr12-40016530-1	chr12	40016030	40017030	+	820.0	f1_balb.idr	Intergenic	Intergenic	20846.0	NM_007487	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0.0	2.5	14.5	4.5	5.0	5.0
Merged-chr5-124631784-2	chr5	124631283	124632283	+	820.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011596, intron 1 of 19)	intron (NM_011596, intron 1 of 19)	2731.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	1.0	6.0	0.0	2.0	10.0	5.5
Merged-chr16-71701871-1	chr16	71701371	71702371	+	820.0	f1_c57bl6.idr	Intergenic	ORR1A1|LTR|ERVL-MaLR	451967.0	NR_040576	78221.0	Mm.399298	NR_040576		4930567J20Rik	-	RIKEN cDNA 4930567J20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71256020-4	chr17	71255484	71256484	+	820.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357336, exon 6 of 8)	exon (NM_001357336, exon 6 of 8)	51330.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	5.5	0.0	3.0	2.5	6.5	10.0
Merged-chr1-173459687-2	chr1	173459180	173460180	+	820.0	f0_balb.idr|f1_balb.idr	intron (NM_001013779, intron 5 of 8)	CT-rich|Low_complexity|Low_complexity	39076.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	3.0	22.0	7.5	3.0	40.0	28.0
Merged-chr19-46312654-2	chr19	46312154	46313154	+	820.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177369)	TTS (NM_001177369)	6724.0	NM_001177370	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr2-109279816-2	chr2	109279316	109280316	+	820.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139303)	promoter-TSS (NM_139303)	-922.0	NM_139303	228421.0	Mm.274086	NM_139303	ENSMUSG00000027115	Kif18a	AU024633|B130001M12Rik|gcd2	kinesin family member 18A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105664563-2	chr1	105664079	105665079	+	820.0	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013784)	promoter-TSS (NM_013784)	718.0	NM_029349	227446.0	Mm.337339	NM_029349	ENSMUSG00000026319	2310035C23Rik	6430401N10|Kiaa1468|Relch|mKIAA1468	RIKEN cDNA 2310035C23 gene	protein-coding	10.0	54.5	18.0	2.5	32.0	17.0
Merged-chr19-7267306-3	chr19	7266823	7267823	+	820.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054048)	promoter-TSS (NM_054048)	-71.0	NM_054048	104383.0	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100821702-3	chr5	100821224	100822224	+	819.977783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172405)	promoter-TSS (NM_172405)	-789.0	NM_172405	70681.0	Mm.486560	NM_172405	ENSMUSG00000035234	Abraxas1	3830405G04Rik|5630400M01Rik|AI506069|AL024423|AV118690|Ccdc98|Fam175a	BRCA1 A complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123941101-4	chr4	123940602	123941602	+	819.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23669.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	1.0	11.0	4.0	0.0	6.5	1.0
Merged-chr6-122892685-4	chr6	122892216	122893216	+	819.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18159.0	NM_026267	67602.0	Mm.288114	NM_026267	ENSMUSG00000030327	Necap1	1200016B17Rik|AI747569|mFLJ00061	NECAP endocytosis associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102760546-4	chr2	102760013	102761013	+	819.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077514, intron 7 of 10)	intron (NM_001077514, intron 7 of 10)	-13753.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-115815212-2	chr3	115814712	115815712	+	819.916687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72847.0	NR_027894	68161.0	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-64888394-2	chr18	64887889	64888889	+	819.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	CpG	633.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	16.0	4.0	21.0	5.5	4.5	5.5
Merged-chr6-97006862-2	chr6	97006362	97007362	+	819.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_177233, intron 3 of 5)	intron (NM_177233, intron 3 of 5)	53549.0	NM_177233	320701.0	Mm.131700	NM_177233	ENSMUSG00000046500	Fam19a4	C130034I18Rik|Fam19a4 Tafa-4|Tafa-4	family with sequence similarity 19, member A4	protein-coding	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr13-45416840-3	chr13	45416337	45417337	+	819.9111330000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27095.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40138187-4	chr10	40137740	40138740	+	819.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	4014.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66969095-5	chr15	66968570	66969570	+	819.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008681, intron 1 of 15)	CpG	571.0	NM_008681	17988.0	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	0.0	0.0	2.0	1.0	0.0	0.5
Merged-chr9-16114952-3	chr9	16114449	16115449	+	819.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	-240393.0	NM_145712	244701.0	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45478234-3	chr9	45477724	45478724	+	819.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-46992.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	0.0	3.5	5.5	0.0	1.0	6.0
Merged-chr15-99083467-3	chr15	99082967	99083967	+	819.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030159)	TTS (NM_030159)	2662.0	NR_105925	102465579.0		NR_105925	ENSMUSG00000098698	Mir6960	Gm27620|mmu-mir-6960	microRNA 6960	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52919207-3	chr6	52918714	52919714	+	819.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 1 of 4)	intron (NM_173406, intron 1 of 4)	-9594.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91097260-3	chr2	91096781	91097781	+	819.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011355, intron 1 of 4)	intron (NM_011355, intron 1 of 4)	603.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	32.5	73.5	76.5	27.5	108.5	62.0
Merged-chr2-152740626-4	chr2	152740128	152741128	+	819.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4377.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	12.5	14.5	9.5	12.0	3.0	5.5
Merged-chr8-106063266-4	chr8	106062769	106063769	+	819.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010901, intron 1 of 9)	B4A|SINE|B4	3666.0	NM_010901	18021.0	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-94703638-4	chr9	94703144	94704144	+	819.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 2 of 15)	intron (NM_177909, intron 2 of 15)	33752.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	19.0	30.0	22.5	4.0	43.5	18.0
Merged-chr18-50081426-4	chr18	50080913	50081913	+	819.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134131, intron 1 of 1)	Lx7|LINE|L1	-27751.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	10.0	18.0	20.0	1.5	15.0	5.5
Merged-chr2-156967325-6	chr2	156966824	156967824	+	819.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355394, intron 1 of 15)	intron (NM_001355394, intron 1 of 15)	24379.0	NM_001355391	29812.0	Mm.279256	NM_013865	ENSMUSG00000027634	Ndrg3	4833415O14Rik|AI747193|Ndr3	N-myc downstream regulated gene 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84184958-2	chr15	84184458	84185458	+	819.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_054088, intron 7 of 7)	intron (NM_054088, intron 7 of 7)	-7275.0	NM_178614	68653.0	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87656311-4	chr1	87655823	87656823	+	819.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	L1MC4|LINE|L1	36011.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16419888-2	chr19	16419388	16420388	+	819.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-15779.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167335921-3	chr2	167335423	167336423	+	819.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	13255.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-96206902-4	chr5	96206405	96207405	+	819.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3210.0	NM_001039084	94061.0	Mm.295499	NM_053158	ENSMUSG00000029486	Mrpl1	2410002L03Rik|5830418D04Rik|AI462572|L1mt	mitochondrial ribosomal protein L1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31502897-3	chr6	31502401	31503401	+	819.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013791, intron 17 of 17)	intron (NM_013791, intron 17 of 17)	61036.0	NM_013723	27205.0	Mm.89918	NM_013723	ENSMUSG00000025608	Podxl	AW121214|Ly102|PC|PCLP-1|Pclp1|Podxl1	podocalyxin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59249018-3	chr15	59248520	59249520	+	819.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57928.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	1.5	1.0	0.0	0.0	1.5	0.0
Merged-chr11-97408342-5	chr11	97407819	97408819	+	819.806702	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41841.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0.0	5.5	0.0	0.0	0.5	0.5
Merged-chr12-104290045-4	chr12	104289549	104290549	+	819.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ETnERV2-int|LTR|ERVK	-24521.0	NM_001101472	238395.0	Mm.436975	NM_001101472	ENSMUSG00000079013	Serpina3j	AI506554|EG238395|Gm4931	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3J	protein-coding	5.0	37.5	13.0	4.0	21.0	17.5
Merged-chr2-101982214-4	chr2	101981690	101982690	+	819.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178886, intron 4 of 5)	intron (NM_178886, intron 4 of 5)	95928.0	NM_029635	76501.0	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	0.0	1.5	0.0	2.5	0.0	1.0
Merged-chr11-116918803-4	chr11	116918301	116919301	+	819.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172948)	promoter-TSS (NM_172948)	-62.0	NM_172948	268510.0	Mm.35141	NM_172948	ENSMUSG00000043857	Mgat5b	C330018B01|GnT-IX|mGnTVB	mannoside acetylglucosaminyltransferase 5, isoenzyme B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-26071765-3	chr12	26071284	26072284	+	819.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	138721.0	NR_131149	629481.0	Mm.390460	NR_131149	ENSMUSG00000113550	Gm29687	-	predicted gene, 29687	ncRNA	0.0	3.0	3.0	0.0	1.5	2.0
Merged-chr14-33371418-3	chr14	33370901	33371901	+	819.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CCTG)n|Simple_repeat|Simple_repeat	39623.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58903129-3	chr9	58902649	58903649	+	819.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008684, intron 19 of 28)	intron (NM_008684, intron 19 of 28)	79637.0	NM_001081192	330953.0	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167491174-2	chr2	167490674	167491674	+	819.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356523, intron 1 of 3)	intron (NM_001356523, intron 1 of 3)	-1471.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97841248-4	chr11	97840751	97841751	+	819.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080935, intron 1 of 2)	intron (NM_001080935, intron 1 of 2)	471.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	2.5	11.5	9.5	3.0	2.0	1.5
Merged-chr9-45295395-2	chr9	45294895	45295895	+	819.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-23705.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100538637-4	chr12	100538131	100539131	+	819.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17809.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36799589-2	chr18	36799089	36800089	+	819.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025594)	TTS (NM_025594)	-2174.0	NR_027885	378472.0	Mm.482379	NR_027885		Vaultrc5	Gm22653|Mvg1	vault RNA component 5	ncRNA	0.0	0.0	8.0	6.5	2.0	0.5
Merged-chr12-3763306-4	chr12	3762810	3763810	+	819.729187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027869, intron 16 of 20)	intron (NR_027869, intron 16 of 20)	-43670.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59194848-3	chr2	59194315	59195315	+	819.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	33965.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11254142-3	chr2	11253638	11254638	+	819.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 9 of 17)	intron (NM_008859, intron 9 of 17)	81756.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47353180-3	chr14	47352781	47353781	+	819.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-20579.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	25.0	42.5	49.5	12.0	36.0	47.5
Merged-chr11-86653702-3	chr11	86653241	86654241	+	819.714294	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 5 of 11)	intron (NM_001356531, intron 5 of 11)	17534.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-82876576-4	chr3	82876072	82877072	+	819.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277170)	promoter-TSS (NM_001277170)	-89.0	NM_001146328	633285.0	Mm.265114	NM_001146328	ENSMUSG00000033882	Rbm46	EG633285|Gm761	RNA binding motif protein 46	protein-coding	0.0	1.0	0.0	1.0	0.0	0.0
Merged-chr11-103965143-2	chr11	103964638	103965638	+	819.6999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1587.0	NM_001304574	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64098481-9	chr15	64097997	64098997	+	819.685181	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 26 of 28)	intron (NM_001276461, intron 26 of 28)	-38049.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	18.5	25.5	26.5	5.0	27.5	39.0
Merged-chr13-23586857-3	chr13	23586372	23587372	+	819.68335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290530)	promoter-TSS (NM_001290530)	-902.0	NM_001290530	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-54316977-3	chr3	54316454	54317454	+	819.68335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253682, intron 10 of 11)	intron (NM_001253682, intron 10 of 11)	-44153.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	5.0	12.5	12.0	3.5	44.0	26.5
Merged-chr17-48198602-4	chr17	48198097	48199097	+	819.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31340.0	NM_178796	328830.0	Mm.470939	NM_178796	ENSMUSG00000043939	A530064D06Rik	Trem4|pdctrem	RIKEN cDNA A530064D06 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55585500-5	chr19	55585016	55586016	+	819.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	116688.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	8.0	28.5	14.0	16.5	24.0	9.5
Merged-chr1-84838289-1	chr1	84837789	84838789	+	819.666687	f0_balb.idr	intron (NM_133975, intron 1 of 40)	intron (NM_133975, intron 1 of 40)	1015.0	NM_133975	14897.0	Mm.209265	NM_133975	ENSMUSG00000026219	Trip12	1110036I07Rik|6720416K24Rik|AA410158|Gtl6|TRIP-12	thyroid hormone receptor interactor 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166228612-3	chr2	166228099	166229099	+	819.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45309.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104639661-3	chr3	104639163	104640163	+	819.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009196, intron 1 of 4)	intron (NM_009196, intron 1 of 4)	999.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80668923-3	chr10	80668400	80669400	+	819.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021462, intron 10 of 13)	intron (NM_021462, intron 10 of 13)	7393.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-38815153-3	chr12	38814654	38815654	+	819.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163154, intron 2 of 9)	intron (NM_001163154, intron 2 of 9)	31443.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.0	0.0	3.0	0.0	2.5	1.0
Merged-chr11-83115334-2	chr11	83114834	83115834	+	819.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1486.0	NM_011407	20555.0	Mm.10948	NM_011407	ENSMUSG00000078763	Slfn1	AV316259	schlafen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114988732-2	chr11	114988232	114989232	+	819.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145437, intron 1 of 3)	B4A|SINE|B4	1154.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	45.0	117.0	76.5	30.0	86.0	39.0
Merged-chr13-29959213-4	chr13	29958711	29959711	+	819.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010093, intron 1 of 6)	MTC|LTR|ERVL-MaLR	25180.0	NM_001289920	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43408227-2	chr7	43407727	43408727	+	819.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172900)	promoter-TSS (NM_172900)	-53.0	NM_172900	243958.0	Mm.24444	NM_172900	ENSMUSG00000030468	Siglecg	9830164H23|A630096C01Rik|Siglec-G|Siglec10|mSiglec-G	sialic acid binding Ig-like lectin G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87064195-3	chr17	87063694	87064694	+	819.638855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38633.0	NM_019936	56724.0	Mm.109329	NM_019936	ENSMUSG00000024146	Cript	1200020A08Rik|AA589469	cysteine-rich PDZ-binding protein	protein-coding	0.5	4.5	3.0	0.0	1.5	0.0
Merged-chr9-21469272-4	chr9	21468826	21469826	+	819.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 4 of 19)	intron (NM_001357721, intron 4 of 19)	27238.0	NR_029585	387194.0		NR_029585	ENSMUSG00000065547	Mir199a-1	Mirn199|Mirn199a-1|mir-199a-1	microRNA 199a-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62411160-3	chr10	62410651	62411651	+	819.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145419, intron 4 of 17)	intron (NM_145419, intron 4 of 17)	11306.0	NM_145419	216019.0	Mm.213213	NM_145419	ENSMUSG00000020080	Hkdc1	BC016235	hexokinase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-118562151-3	chr3	118561651	118562651	+	819.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170778)	promoter-TSS (NM_170778)	-29.0	NM_170778	99586.0	Mm.27907	NM_170778	ENSMUSG00000033308	Dpyd	AI315208|DHPDHase|DPD|E330028L06Rik	dihydropyrimidine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-3776520-4	chr16	3775991	3776991	+	819.604126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32392.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98799871-3	chr7	98799369	98800369	+	819.600037	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-35243.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	4.0	0.0	0.0	0.0	2.5	7.0
Merged-chr6-149315083-4	chr6	149314574	149315574	+	819.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026054, intron 2 of 4)	intron (NM_026054, intron 2 of 4)	5660.0	NM_001289662	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70820411-5	chr8	70819976	70820976	+	819.599976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008353, intron 15 of 15)	intron (NM_008353, intron 15 of 15)	12027.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	1.0	2.0	0.5	0.5	0.0	1.0
Merged-chr12-36208667-3	chr12	36208178	36209178	+	819.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027699, exon 5 of 5)	exon (NM_027699, exon 5 of 5)	9540.0	NM_027699	71156.0	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	5.5	10.5	9.0	5.5	11.0	15.0
Merged-chr4-135312947-2	chr4	135312447	135313447	+	819.583313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40187.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71939107-4	chr2	71938598	71939598	+	819.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42117.0	NM_001204167	56508.0	Mm.196153	NM_019688	ENSMUSG00000049044	Rapgef4	1300003D15Rik|5730402K07Rik|6330581N18Rik|EPAC 2|Epac-2|Epac2|mKIAA4040	Rap guanine nucleotide exchange factor (GEF) 4	protein-coding	19.0	19.0	27.0	2.0	9.0	10.0
Merged-chr8-70166891-4	chr8	70166455	70167455	+	819.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045484, intron 8 of 8)	intron (NM_001045484, intron 8 of 8)	-5453.0	NM_145597	234371.0	Mm.23488	NM_145597	ENSMUSG00000002342	Tmem161a	AI428876|BB161850|BC021367	transmembrane protein 161A	protein-coding	0.0	1.5	1.0	2.5	0.0	2.5
Merged-chr17-64789935-3	chr17	64789405	64790405	+	819.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22794.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-77464989-3	chr5	77464488	77465488	+	819.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131050)	promoter-TSS (NR_131050)	-500.0	NR_131050	69370.0	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-72203810-3	chr2	72203357	72204357	+	819.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355478, intron 11 of 26)	intron (NM_001355478, intron 11 of 26)	-81780.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	4.5	0.0	3.0	0.5	1.5	6.0
Merged-chr4-45436829-3	chr4	45436335	45437335	+	819.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 5 of 5)	intron (NM_001033306, intron 5 of 5)	-28069.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	2.0	6.0	1.0	0.0	0.0	1.0
Merged-chr19-29431663-4	chr19	29431150	29432150	+	819.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 2 of 5)	MTEb|LTR|ERVL-MaLR	20731.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-31972186-4	chr19	31971669	31972669	+	819.520874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103408.0	NM_001081074	69865.0	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123535490-2	chr4	123534990	123535990	+	819.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 5 of 92)	intron (NM_001199137, intron 5 of 92)	-80930.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-30969882-2	chr3	30969382	30970382	+	819.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165955)	promoter-TSS (NM_001165955)	-467.0	NM_001165956	241915.0	Mm.233173	NM_153421	ENSMUSG00000037652	Phc3	E030046K01Rik|Edr3|Hph3	polyhomeotic 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118585761-2	chr9	118585261	118586261	+	819.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20948.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96850436-2	chr11	96849936	96850936	+	819.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029562)	promoter-TSS (NR_029562)	43.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-48787014-2	chr11	48786514	48787514	+	819.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-13346.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133929462-2	chr4	133928958	133929958	+	819.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	38533.0	NM_016957	15331.0	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	36.0	77.0	68.5	22.0	57.0	61.0
Merged-chr13-23589507-2	chr13	23589007	23590007	+	819.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177653, intron 1 of 1)	intron (NM_001177653, intron 1 of 1)	-3537.0	NM_001290530	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45521312-4	chr7	45520645	45521645	+	819.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045555, intron 11 of 13)	intron (NM_001045555, intron 11 of 13)	5123.0	NM_008654	17872.0	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	4.0	5.5	3.5	2.0	15.0	15.0
Merged-chr9-70824597-2	chr9	70824097	70825097	+	819.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	110211.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-150583970-2	chr5	150583470	150584470	+	819.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133898, intron 1 of 4)	intron (NM_133898, intron 1 of 4)	10555.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57729067-2	chr10	57728567	57729567	+	819.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039050, intron 4 of 4)	RMER6A|LTR|ERVK	-55856.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108971944-2	chr9	108971444	108972444	+	819.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_007738, exon 68 of 118)	exon (NM_007738, exon 68 of 118)	2022.0	NR_030492	751536.0		NR_030492	ENSMUSG00000076142	Mir711	Mirn711|mir-711|mmu-mir-711	microRNA 711	ncRNA	0.0	0.0	7.5	0.0	0.0	6.0
Merged-chr17-84071648-2	chr17	84071148	84072148	+	819.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-7012.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-77422689-2	chr8	77422189	77423189	+	819.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 5 of 22)	intron (NM_030113, intron 5 of 22)	-94367.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84206878-2	chr12	84206378	84207378	+	819.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	L2|LINE|L2	12003.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-92058775-2	chr17	92058275	92059275	+	819.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-965973.0	NM_020252	18189.0	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141413629-2	chr7	141413129	141414129	+	819.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172116, intron 1 of 7)	intron (NM_172116, intron 1 of 7)	496.0	NM_172116	213350.0	Mm.290953	NM_172116	ENSMUSG00000051007	Gatd1	BC023835|D230016J19Rik|Pddc1	glutamine amidotransferase like class 1 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-79333272-2	chr5	79332772	79333772	+	819.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-1687299.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3858658-2	chr12	3858158	3859158	+	819.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045884)	TTS (NR_045884)	3586.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11036172-2	chr8	11035672	11036672	+	819.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_046017, intron 1 of 4)	intron (NR_046017, intron 1 of 4)	-27742.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148547315-2	chr5	148546815	148547815	+	819.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 3 of 6)	PB1D10|SINE|Alu	4358.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43766504-2	chr13	43766004	43767004	+	819.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-18608.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-10241982-2	chr3	10241482	10242482	+	819.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12243.0	NM_001357161	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3934185-2	chr19	3933685	3934685	+	819.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1001.0	NM_019449	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95783680-2	chr4	95783180	95784180	+	819.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029347, intron 8 of 10)	intron (NM_029347, intron 8 of 10)	183355.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	0.0	2.5	0.5	0.0	10.5	5.5
Merged-chr3-88408855-2	chr3	88408355	88409355	+	819.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025928, intron 1 of 4)	intron (NM_025928, intron 1 of 4)	1542.0	NM_001310605	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116996497-2	chr4	116995997	116996997	+	819.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175244, intron 3 of 20)	intron (NM_175244, intron 3 of 20)	1149.0	NM_175244	76608.0	Mm.251420	NM_175244	ENSMUSG00000046861	Hectd3	1700064K09Rik|AI467540|AW743312	HECT domain E3 ubiquitin protein ligase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-45838454-1	chr1	45837954	45838954	+	819.5	f0_balb.idr	Intergenic	Intergenic	43288.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-36020212-2	chr4	36019712	36020712	+	819.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166000, intron 7 of 8)	L1Md_F|LINE|L1	-175008.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71787301-2	chr2	71786801	71787801	+	819.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001277970, exon 1 of 25)	exon (NM_001277970, exon 1 of 25)	362.0	NM_001277970	16403.0	Mm.225096	NM_008397	ENSMUSG00000027111	Itga6	5033401O05Rik|AI115430|Cd49f|VLA-6	integrin alpha 6	protein-coding	0.0	0.0	0.5	0.0	0.0	3.0
Merged-chr17-34606879-2	chr17	34606379	34607379	+	819.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163379, intron 1 of 6)	intron (NM_001163379, intron 1 of 6)	1018.0	NM_001163379	55979.0	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	10.5	12.0	3.5	0.0	19.5	9.0
Merged-chr2-132112027-2	chr2	132111527	132112527	+	819.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	33081.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-41408068-3	chr3	41407553	41408553	+	819.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85146.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20730614-2	chr16	20730114	20731114	+	819.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289896)	promoter-TSS (NM_001289896)	-16.0	NM_001289894	21832.0	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99129235-2	chr7	99128735	99129735	+	819.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 1 of 14)	intron (NM_178635, intron 1 of 14)	11909.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83882318-3	chr7	83881709	83882709	+	819.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030705, exon 1 of 1)	exon (NM_030705, exon 1 of 1)	2132.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	0.0	2.0	5.0	0.0	7.5	4.0
Merged-chr11-110697620-2	chr11	110697120	110698120	+	819.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	218280.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-28070320-2	chr5	28069820	28070820	+	819.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1092.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58265641-2	chr9	58265141	58266141	+	819.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12477.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-193600083-1	chr1	193599583	193600583	+	819.5	f0_balb.idr	Intergenic	BLACKJACK|DNA|hAT-Blackjack	-92553.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84689147-2	chr18	84688647	84689647	+	819.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MURVY-LTR|LTR|ERV1	-3445.0	NM_023149	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38289719-4	chr15	38289193	38290193	+	819.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10207.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46709211-3	chr19	46708705	46709705	+	819.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020577, intron 4 of 10)	intron (NM_020577, intron 4 of 10)	1762.0	NM_020577	57344.0	Mm.28566	NM_020577	ENSMUSG00000003559	As3mt	2310045H08Rik|Cyt19	arsenic (+3 oxidation state) methyltransferase	protein-coding	0.5	0.0	0.0	8.5	27.0	24.0
Merged-chr8-111325338-4	chr8	111324859	111325859	+	819.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310613, intron 4 of 10)	L1M5|LINE|L1	12846.0	NM_001310613	74568.0	Mm.207971	NM_029005	ENSMUSG00000012519	Mlkl	9130019I15Rik	mixed lineage kinase domain-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-84466936-3	chr9	84466428	84467428	+	819.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-307470.0	NR_040739	75253.0	Mm.401984	NR_040739	ENSMUSG00000099724	4930554C24Rik	-	RIKEN cDNA 4930554C24 gene	ncRNA	0.5	6.0	2.0	0.0	0.0	0.0
Merged-chr4-142005532-4	chr4	142005032	142006032	+	819.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 1 of 31)	intron (NM_177868, intron 1 of 31)	6119.0	NM_177868	329977.0	Mm.252019	NM_028429	ENSMUSG00000051435	Fhad1	2900090M10Rik|B230311F11	forkhead-associated (FHA) phosphopeptide binding domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78360456-7	chr11	78359968	78360968	+	819.428589	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008238, intron 8 of 8)	intron (NM_008238, intron 8 of 8)	13758.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35870378-9	chr16	35869879	35870879	+	819.4259030000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039530, intron 1 of 16)	intron (NM_001039530, intron 1 of 16)	1003.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	14.5	39.0	35.0	14.5	45.0	20.5
Merged-chr16-10489762-4	chr16	10489235	10490235	+	819.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243761)	promoter-TSS (NM_001243761)	-46.0	NM_001243761	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55888415-2	chr16	55887915	55888915	+	819.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134457, intron 2 of 5)	intron (NM_001134457, intron 2 of 5)	6864.0	NM_001134457	385658.0	Mm.310635	NM_001134457	ENSMUSG00000075033	Nxpe3	Fam55c|Gm1752|Gm611	neurexophilin and PC-esterase domain family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47753422-2	chr17	47752922	47753922	+	819.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	15491.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	12.5	64.0	30.5	16.0	35.5	31.0
Merged-chr6-143142478-4	chr6	143141998	143142998	+	819.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153819, intron 5 of 8)	intron (NR_153819, intron 5 of 8)	11433.0	NR_153819	102633311.0	Mm.333484	NR_153819		Gm31108	Gm31169	predicted gene, 31108	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88234058-2	chr1	88233558	88234558	+	819.416626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001281466, exon 8 of 42)	exon (NM_001281466, exon 8 of 42)	7038.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90295793-3	chr3	90295292	90296292	+	819.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25643.0	NR_105979	102465612.0		NR_105979	ENSMUSG00000099199	Mir7012	Gm27370|mmu-mir-7012	microRNA 7012	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79181947-3	chr12	79181463	79182463	+	819.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021557, intron 6 of 6)	B2_Mm2|SINE|B2	8998.0	NM_001362269	17252.0	Mm.291799	NM_021557	ENSMUSG00000066441	Rdh11	2610319N22Rik|AI428145|AU045252|Arsdr1|C85936|CGI-82|HCBP12|M42C60|Mdt1|Psdr1|SCALD|UBE-1c1|Ube-1c|ralR1	retinol dehydrogenase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102636862-4	chr7	102636364	102637364	+	819.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3384.0	NM_146325	258322.0	Mm.377435	NM_146325	ENSMUSG00000073971	Olfr554	MOR25-1	olfactory receptor 554	protein-coding	2.5	0.0	0.0	0.0	0.0	3.5
Merged-chr2-4446115-4	chr2	4445597	4446597	+	819.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	45121.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165187498-5	chr1	165187024	165188024	+	819.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151712, intron 3 of 8)	intron (NR_151712, intron 3 of 8)	6909.0	NM_145512	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-92534928-2	chr6	92534428	92535428	+	819.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134459)	promoter-TSS (NM_001134459)	-67.0	NM_001134459	243548.0	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73953453-2	chr17	73952953	73953953	+	819.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3257.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90899599-2	chr5	90899104	90900104	+	819.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4295.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	23.5	23.0	4.5	7.5	21.0	9.5
Merged-chr15-103315328-3	chr15	103314912	103315912	+	819.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013866, exon 7 of 8)	exon (NM_013866, exon 7 of 8)	-4974.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95605519-3	chr16	95605030	95606030	+	819.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18937.0	NM_001302152	13876.0	Mm.164531	NM_133659	ENSMUSG00000040732	Erg	D030036I24Rik	ETS transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-83337495-3	chr10	83337002	83338002	+	819.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177388, intron 1 of 10)	CpG	315.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93124227-3	chr1	93123723	93124723	+	819.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11017.0	NM_001276710	11611.0	Mm.7457	NM_016702	ENSMUSG00000026272	Agxt	AGT|Agt1|Agxt1|SPT	alanine-glyoxylate aminotransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-44624997-3	chr15	44624504	44625504	+	819.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357690, intron 2 of 6)	B3|SINE|B2	5363.0	NM_019480	55960.0	Mm.287896	NM_019480	ENSMUSG00000022339	Ebag9	AI835379|Rcas1	estrogen receptor-binding fragment-associated gene 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37761027-3	chr13	37760511	37761511	+	819.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65027.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59547649-3	chr4	59547188	59548188	+	819.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144904, intron 1 of 14)	intron (NM_144904, intron 1 of 14)	1676.0	NM_178164	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44123529-4	chr16	44123030	44124030	+	819.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	15729.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140763551-5	chr5	140763181	140764181	+	819.299988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 2 of 3)	intron (NM_010302, intron 2 of 3)	39554.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-58504821-4	chr4	58504324	58505324	+	819.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010336, intron 1 of 3)	intron (NM_010336, intron 1 of 3)	-5421.0	NM_001290486	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-105034640-3	chr9	105034181	105035181	+	819.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357439)	TTS (NM_001357439)	-18587.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	13.0	57.5	26.0	36.0	161.0	98.0
Merged-chr7-16902112-1	chr7	16901612	16902612	+	819.25	f0_balb.idr	Intergenic	Intergenic	-4378.0	NM_008967	19222.0	Mm.287572	NM_008967	ENSMUSG00000043017	Ptgir	IP|PGI2	prostaglandin I receptor (IP)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113225949-2	chr6	113225461	113226461	+	819.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11882.0	NM_001362183	97287.0	Mm.197816	NM_026849	ENSMUSG00000030269	Mtmr14	1110061O04Rik|AW553738|C76151	myotubularin related protein 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117667093-4	chr5	117666599	117667599	+	819.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 5 of 19)	intron (NM_001312914, intron 5 of 19)	-199740.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0.0	0.5	0.5	0.0	0.5	1.5
Merged-chr13-59853787-2	chr13	59853274	59854274	+	819.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30627.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	13.5	8.0	21.0	6.0	7.0	9.0
Merged-chr13-70935287-2	chr13	70934787	70935787	+	819.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52339.0	NM_029873	77166.0	Mm.159859	NM_029873	ENSMUSG00000021600	8030423J24Rik	-	RIKEN cDNA 8030423J24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-77047438-1	chr12	77046938	77047938	+	819.25	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-85190.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11470961-2	chr8	11470461	11471461	+	819.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-6968.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70059441-2	chr14	70058949	70059949	+	819.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-17996.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44864915-2	chr7	44864503	44865503	+	819.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_133949, intron 6 of 11)	intron (NM_133949, intron 6 of 11)	4785.0	NM_133949	84113.0	Mm.42855	NM_133949	ENSMUSG00000038502	Ptov1	1110030G05Rik|AU041779|Gcap3	prostate tumor over expressed gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88146268-1	chr15	88145768	88146768	+	819.25	f0_balb.idr	Intergenic	Intergenic	-168606.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-64430274-3	chr18	64429784	64430784	+	819.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58814.0	NM_007998	14151.0	Mm.1070	NM_007998	ENSMUSG00000024588	Fech	AI894116|Fcl|fch	ferrochelatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170119441-4	chr2	170118945	170119945	+	819.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159683, exon 3 of 7)	exon (NM_001159683, exon 3 of 7)	11775.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24650019-5	chr17	24649641	24650641	+	819.227783	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001357796, exon 1 of 6)	exon (NM_001357796, exon 1 of 6)	164.0	NM_001357796	65962.0	Mm.21587	NM_023055	ENSMUSG00000002504	Slc9a3r2	0610011L07Rik|1200011K07Rik|2010007A20Rik|E3karp|NHERF-2|Nherf2|Octs2|Sip-1|Sip1|Sryip1|Tka-1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16295009-3	chr1	16294498	16295498	+	819.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111272, intron 11 of 12)	intron (NM_001111272, intron 11 of 12)	189116.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0.0	5.5	0.0	0.0	0.0	0.0
Merged-chr4-147528152-2	chr4	147527652	147528652	+	819.214294	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25125.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181239791-4	chr2	181239340	181240340	+	819.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183162, intron 2 of 18)	intron (NM_183162, intron 2 of 18)	2187.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95067730-4	chr8	95067200	95068200	+	819.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042715, intron 7 of 17)	intron (NM_001042715, intron 7 of 17)	12597.0	NM_001042715	330830.0	Mm.277112	NM_001042715	ENSMUSG00000031786	Drc7	Ccdc135|Gm770|SRG-L|SRG-S	dynein regulatory complex subunit 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120898313-4	chr6	120897823	120898823	+	819.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007544, intron 3 of 5)	intron (NM_007544, intron 3 of 5)	18501.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	3.0	0.0	0.0	0.0	0.0	1.0
Merged-chr12-3854704-3	chr12	3854193	3855193	+	819.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 3 of 22)	intron (NM_007872, intron 3 of 22)	7551.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58348866-4	chr1	58348344	58349344	+	819.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008419, intron 28 of 35)	intron (NM_001008419, intron 28 of 35)	-44292.0	NM_025824	66882.0	Mm.21848	NM_025824	ENSMUSG00000051223	Bzw1	1200015E15Rik|mKIAA0005	basic leucine zipper and W2 domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89771752-2	chr3	89771252	89772252	+	819.166687	f1_balb.idr|f1_c57bl6.idr	intron (NR_130957, intron 1 of 1)	intron (NR_130957, intron 1 of 1)	1648.0	NR_130957	74034.0	Mm.386816	NR_130957	ENSMUSG00000042579	4632404H12Rik	-	RIKEN cDNA 4632404H12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139331913-3	chr5	139331431	139332431	+	819.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6467.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130631310-4	chr2	130630643	130631643	+	819.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1105.0	NM_001255994	140629.0	Mm.486003	NM_080562	ENSMUSG00000027300	Ubox5	1500010O06Rik|C330018L13Rik|Rnf37|UIP5|Ubce7ip5|Ube7ip5	U box domain containing 5	protein-coding	7.0	9.5	5.0	4.0	12.5	26.0
Merged-chr5-123860604-3	chr5	123860106	123861106	+	819.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	X7A_LINE|LINE|CR1	4910.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	1.0	15.5	2.5	0.5	1.0	8.5
Merged-chr9-66978100-3	chr9	66977607	66978607	+	819.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-2623.0	NM_030717	80907.0	Mm.157882	NM_030717	ENSMUSG00000032370	Lactb	LACT-1|Lact1|Mrpl56	lactamase, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-13667982-2	chr13	13667482	13668482	+	819.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010748, intron 18 of 52)	Lx5c|LINE|L1	77573.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-27031245-2	chr8	27030745	27031745	+	819.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_153592, intron 6 of 11)	intron (NM_153592, intron 6 of 11)	7446.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86402468-4	chr1	86401985	86402985	+	819.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13124.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61703707-8	chr9	61703166	61704166	+	819.161438	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	210844.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-28294176-4	chr5	28293674	28294674	+	819.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23015.0	NM_028234	381626.0	Mm.304075	NM_028234	ENSMUSG00000048271	Rbm33	3200001K10Rik|6430512A10Rik|AA386890|Prr8	RNA binding motif protein 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99379758-2	chr7	99379258	99380258	+	819.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1760.0	NM_001362168	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40087843-4	chr10	40087325	40088325	+	819.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	L1MC3|LINE|L1	54429.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128724945-4	chr7	128724430	128725430	+	819.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145955, intron 2 of 15)	intron (NM_145955, intron 2 of 15)	15499.0	NM_145955	210711.0	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51797027-4	chr3	51796573	51797573	+	819.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	135894.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133498612-4	chr4	133498108	133499108	+	819.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081156)	promoter-TSS (NM_001081156)	-58.0	NM_001081156	69539.0	Mm.151594	NM_001081156	ENSMUSG00000056596	Trnp1	2300002D11Rik|Trnp	TMF1-regulated nuclear protein 1	protein-coding	0.5	1.5	4.0	0.0	2.0	0.0
Merged-chr6-142831505-3	chr6	142831015	142832015	+	819.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045707, intron 6 of 6)	intron (NR_045707, intron 6 of 6)	17284.0	NR_045707	665037.0	Mm.401493	NR_045707	ENSMUSG00000072683	Gm7457	EG665037	predicted gene 7457	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39917678-3	chr1	39917171	39918171	+	819.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 2 of 29)	L1MEc|LINE|L1	16758.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116483485-3	chr3	116482992	116483992	+	819.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24683.0	NM_025517	66368.0	Mm.251228	NM_025517	ENSMUSG00000000339	Rtca	2310009A18Rik|AI450277|RPC|Rtcd1	RNA 3'-terminal phosphate cyclase	protein-coding	2.5	10.5	7.5	2.5	10.5	6.5
Merged-chr18-60747158-5	chr18	60746691	60747691	+	819.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348101)	promoter-TSS (NM_001348101)	-445.0	NM_001348101	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	2.0	14.5	10.0	2.0	15.0	10.0
Merged-chr10-40057773-4	chr10	40057227	40058227	+	819.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 3 of 5)	intron (NM_001114332, intron 3 of 5)	-32459.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-168362658-4	chr1	168362168	168363168	+	819.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183355, intron 2 of 8)	intron (NM_183355, intron 2 of 8)	69501.0	NM_001291509	18514.0	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109014904-4	chr8	109014379	109015379	+	819.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-60343.0	NR_126329	628686.0	Mm.203332	NR_126329	ENSMUSG00000097393	D030068K23Rik	-	RIKEN cDNA D030068K23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46592286-4	chr4	46591753	46592753	+	819.041626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 1 of 11)	intron (NM_001164804, intron 1 of 11)	9676.0	NM_001164804	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	2.0	5.0	0.0	6.5	3.5	4.5
Merged-chr12-117516410-1	chr12	117515910	117516910	+	819.0	f0_c57.idr	promoter-TSS (NM_175930)	promoter-TSS (NM_175930)	-69.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96375581-3	chr9	96375099	96376099	+	819.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11168.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	27.0	44.0	27.5	7.0	60.5	29.0
Merged-chr17-17389306-1	chr17	17388806	17389806	+	819.0	f1_c57bl6.idr	intron (NM_025934, intron 8 of 9)	RSINE1|SINE|B4	-13380.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	3.5	2.0	5.0	0.5	5.0	0.0
Merged-chr8-71477805-2	chr8	71477335	71478335	+	819.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164679, intron 16 of 16)	B3|SINE|B2	8232.0	NM_001164679	382014.0	Mm.260360	NM_001164679	ENSMUSG00000034863	Ano8	BC053460|Tmem16h	anoctamin 8	protein-coding	0.0	6.0	10.0	3.0	5.0	2.5
Merged-chr11-120534466-2	chr11	120533966	120534966	+	819.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008101, intron 1 of 13)	intron (NM_008101, intron 1 of 13)	3739.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121963704-2	chr10	121963204	121964204	+	819.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081037, intron 1 of 21)	intron (NM_001081037, intron 1 of 21)	83611.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30906551-1	chr5	30906051	30907051	+	819.0	f1_balb.idr	TTS (NM_024460)	TTS (NM_024460)	1237.0	NM_001134692	67695.0	Mm.21450	NM_024460	ENSMUSG00000038803	Ost4	2310016E02Rik	oligosaccharyltransferase complex subunit 4 (non-catalytic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22185158-2	chr8	22184658	22185658	+	819.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004140, intron 1 of 8)	MTC|LTR|ERVL-MaLR	661.0	NM_001004140	80986.0	Mm.22448	NM_001004140	ENSMUSG00000037725	Ckap2	AI461656|AW228814|LB1	cytoskeleton associated protein 2	protein-coding	5.0	3.0	6.5	4.5	8.5	4.5
Merged-chr5-108582944-1	chr5	108582444	108583444	+	819.0	f1_balb.idr	exon (NM_001282052, exon 20 of 27)	exon (NM_001282052, exon 20 of 27)	-32917.0	NM_007756	12889.0	Mm.5195	NM_007756	ENSMUSG00000033615	Cplx1	921-S	complexin 1	protein-coding	0.0	0.0	0.0	0.5	7.0	5.5
Merged-chr1-119532399-2	chr1	119531899	119532899	+	819.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_126486, intron 3 of 3)	intron (NR_126486, intron 3 of 3)	3766.0	NR_126486	320069.0	Mm.406320	NR_126486	ENSMUSG00000101731	3830432H09Rik	-	RIKEN cDNA 3830432H09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6567507-2	chr15	6567007	6568007	+	819.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12340.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34158972-4	chr10	34158484	34159484	+	819.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 4 of 5)	ORR1E|LTR|ERVL-MaLR	-31012.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-21372032-1	chr12	21371532	21372532	+	819.0	f1_balb.idr	intron (NM_001291871, intron 1 of 18)	B1_Mur1|SINE|Alu	1600.0	NR_102380	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	35.0	99.5	94.5	55.0	91.5	46.5
Merged-chr9-114787327-4	chr9	114786779	114787779	+	819.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5286.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	67.5	158.5	140.5	18.0	66.5	20.0
Merged-chr1-85844211-2	chr1	85843711	85844711	+	819.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355046, intron 6 of 9)	L2a|LINE|L2	50194.0	NM_001355047	12283.0	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31563987-3	chr6	31563486	31564486	+	819.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013723)	promoter-TSS (NM_013723)	-49.0	NM_013723	27205.0	Mm.89918	NM_013723	ENSMUSG00000025608	Podxl	AW121214|Ly102|PC|PCLP-1|Pclp1|Podxl1	podocalyxin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-54590393-2	chr3	54589954	54590954	+	819.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-102361.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	0.0	0.5	0.5	0.5	1.5	0.0
Merged-chr9-106436936-2	chr9	106436436	106437436	+	819.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001276442, exon 3 of 15)	exon (NM_001276442, exon 3 of 15)	1300.0	NM_001276442	109652.0	Mm.7165	NM_025371	ENSMUSG00000023262	Acy1	1110014J22Rik|Acy-1	aminoacylase 1	protein-coding	2.0	6.5	2.5	3.0	4.5	0.5
Merged-chr5-140612926-2	chr5	140612426	140613426	+	819.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008494, intron 5 of 7)	intron (NM_008494, intron 5 of 7)	5585.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62248616-1	chr11	62248116	62249116	+	819.0	f0_balb.idr	promoter-TSS (NM_007413)	promoter-TSS (NM_007413)	-368.0	NM_007413	11541.0	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145197409-2	chr2	145196909	145197909	+	819.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356497, intron 1 of 16)	intron (NM_001356497, intron 1 of 16)	29634.0	NM_001356497	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96372917-2	chr10	96372417	96373417	+	819.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146710.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-42984846-1	chr13	42984346	42985346	+	819.0	f1_balb.idr	intron (NM_001005740, intron 2 of 12)	MTC|LTR|ERVL-MaLR	118599.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	3.0	5.5	2.0	26.5	51.0	32.5
Merged-chr18-80152726-2	chr18	80152226	80153226	+	819.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1244.0	NM_175028	240442.0	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-143412086-2	chr4	143411586	143412586	+	819.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355724)	promoter-TSS (NM_001355724)	-340.0	NM_172877	242736.0	Mm.275953	NM_172877	ENSMUSG00000046862	Pramef8	4732496O08Rik|AU023234	PRAME family member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-54073712-2	chr10	54073212	54074212	+	819.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 2 of 12)	intron (NM_008548, intron 2 of 12)	2084.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84532418-2	chr10	84531918	84532918	+	819.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175451, intron 1 of 1)	intron (NM_175451, intron 1 of 1)	1470.0	NM_175451	216197.0	Mm.334999	NM_175451	ENSMUSG00000046841	Ckap4	5630400A09Rik|CLIMP-63|P63	cytoskeleton-associated protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107887642-2	chr13	107887142	107888142	+	819.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	2422.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-93950713-2	chr15	93950213	93951213	+	819.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-23602.0	NR_045737	77248.0	Mm.410768	NR_045737	ENSMUSG00000116360	9430014N10Rik	-	RIKEN cDNA 9430014N10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-97316837-2	chr9	97316337	97317337	+	819.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53121.0	NM_030219	78911.0	Mm.108347	NM_030219	ENSMUSG00000032451	Trim42	4930486B16Rik	tripartite motif-containing 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107031712-3	chr3	107031244	107032244	+	819.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4418.0	NM_008418	16491.0	Mm.30640	NM_008418	ENSMUSG00000047959	Kcna3	Kca1-3|Kv1.3|Mk-3	potassium voltage-gated channel, shaker-related subfamily, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-112236862-2	chr2	112236367	112237367	+	819.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19|LTR|ERVK	-2974.0	NM_207206	99010.0	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136986342-2	chr5	136985886	136986886	+	819.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011962)	promoter-TSS (NM_011962)	518.0	NM_001310747	70103.0	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	11.5	13.0	5.5	25.5	21.5	5.5
Merged-chr2-170219279-2	chr2	170218779	170219779	+	819.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76604.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-59459100-1	chr1	59458600	59459600	+	819.0	f0_balb.idr	Intergenic	Intergenic	-23047.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr1-152543990-2	chr1	152543490	152544490	+	819.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 9 of 17)	intron (NM_016846, intron 9 of 17)	81227.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12147390-3	chr13	12146892	12147892	+	819.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39096.0	NR_045170	328186.0	Mm.188154	NM_183202		Gm10336	B330003H21	predicted gene 10336	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182271934-1	chr1	182271434	182272434	+	819.0	f0_balb.idr	Intergenic	Intergenic	10261.0	NM_001360783	13244.0	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20242905-2	chr11	20242405	20243405	+	819.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172260, intron 1 of 6)	intron (NM_172260, intron 1 of 6)	6519.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65752269-2	chr18	65751769	65752769	+	819.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177028)	TTS (NM_177028)	-48309.0	NM_025468	66286.0	Mm.27800	NM_025468	ENSMUSG00000024516	Sec11c	1810029G24Rik|Sec11l3	SEC11 homolog C, signal peptidase complex subunit	protein-coding	0.0	2.5	0.0	7.5	0.0	1.0
Merged-chr7-45301489-2	chr7	45300989	45301989	+	819.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18616.0	NM_001033176	76713.0	Mm.425445	NM_001033176	ENSMUSG00000070568	Slc6a21	1700039E15Rik|Gm19188	solute carrier family 6 member 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111109426-2	chr10	111108926	111109926	+	819.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55376.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-78818627-2	chr8	78818127	78819127	+	819.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030145, intron 1 of 3)	intron (NM_030145, intron 1 of 3)	2525.0	NM_001191004	78651.0	Mm.28694	NM_030145	ENSMUSG00000031683	Lsm6	1500031N17Rik|2410088K19Rik|AI747288	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-90841157-3	chr13	90840687	90841687	+	819.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64168.0	NM_001145879	435376.0	Mm.292579	NM_001145879	ENSMUSG00000078958	Atp6ap1l	EG435376	ATPase, H+ transporting, lysosomal accessory protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118053763-1	chr2	118053263	118054263	+	819.0	f0_balb.idr	intron (NR_126479, intron 4 of 9)	LTR41B|LTR|ERVL	57439.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	5.0	2.5	10.5	3.5	5.5	6.5
Merged-chr9-44392990-1	chr9	44392490	44393490	+	819.0	f1_balb.idr	TTS (NM_021395)	TTS (NM_021395)	-3937.0	NM_001293631	14385.0	Mm.30087	NM_008063	ENSMUSG00000032114	Slc37a4	100043178|G6PT|G6pt1|GSD-1b|mG6PT	solute carrier family 37 (glucose-6-phosphate transporter), member 4	protein-coding	0.5	2.0	0.5	3.5	0.0	0.0
Merged-chr8-57491679-2	chr8	57491179	57492179	+	819.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_126553, intron 2 of 3)	ID4_|SINE|ID	3716.0	NR_126555	78353.0	Mm.426240	NR_126553	ENSMUSG00000096917	2500002B13Rik	-	RIKEN cDNA 2500002B13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34052250-1	chr17	34051750	34052750	+	819.0	f1_balb.idr	intron (NM_009926, intron 17 of 63)	intron (NM_009926, intron 17 of 63)	13112.0	NM_001317722	12815.0	Mm.20230	NM_009926	ENSMUSG00000024330	Col11a2	-	collagen, type XI, alpha 2	protein-coding	4.5	0.0	0.5	1.0	0.5	1.0
Merged-chr5-121390590-2	chr5	121390090	121391090	+	819.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4975.0	NM_172275	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	2.0	10.0	10.0	2.0	3.0	2.0
Merged-chr9-61913291-2	chr9	61912791	61913791	+	819.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_018853)	TTS (NM_018853)	1219.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53875103-2	chr11	53874603	53875603	+	819.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011396, exon 4 of 10)	exon (NM_011396, exon 4 of 10)	-15847.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80642082-4	chr7	80641580	80642580	+	818.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040343, exon 5 of 5)	non-coding (NR_040343, exon 5 of 5)	6063.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	10.5	45.0	39.0	34.5	44.0	32.5
Merged-chr19-46960404-3	chr19	46959917	46960917	+	818.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164363, intron 1 of 17)	ID4_|SINE|ID	1934.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	5.5	11.5	6.0	5.5	11.5	6.5
Merged-chr3-80958818-3	chr3	80958313	80959313	+	818.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45153.0	NM_001345955	14658.0	Mm.275639	NM_010298	ENSMUSG00000028020	Glrb	AI853901|Glyrb|spa|spastic	glycine receptor, beta subunit	protein-coding	0.0	6.0	4.5	0.0	2.5	3.0
Merged-chr17-87639450-3	chr17	87638972	87639972	+	818.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008532, intron 2 of 9)	intron (NM_008532, intron 2 of 9)	3493.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-108270674-4	chr5	108270122	108271122	+	818.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026106, intron 1 of 2)	intron (NM_026106, intron 1 of 2)	1725.0	NM_026106	13486.0	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	24.5	8.0	14.0	24.5	7.0	14.0
Merged-chr5-100917562-3	chr5	100917073	100918073	+	818.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71344.0	NM_172715	231510.0	Mm.271911	NM_172715	ENSMUSG00000029314	Gpat3	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|Agpat9|GPAT-3|mGPAT3	glycerol-3-phosphate acyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23810988-3	chr11	23810493	23811493	+	818.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40023.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-74815949-3	chr13	74815448	74816448	+	818.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7188.0	NM_001301153	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	2.0	10.5	3.0	4.0	3.5	2.5
Merged-chr8-69328809-3	chr8	69328310	69329310	+	818.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	57730.0	NM_172491	211135.0	Mm.294970	NM_172491	ENSMUSG00000079038	D130040H23Rik	-	RIKEN cDNA D130040H23 gene	protein-coding	0.0	7.5	6.0	3.5	13.0	7.0
Merged-chr2-26586761-3	chr2	26586255	26587255	+	818.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164564, intron 1 of 8)	CpG	125.0	NM_001164564	353156.0	Mm.268933	NM_178444	ENSMUSG00000026921	Egfl7	VE-statin|Zneu1	EGF-like domain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55774589-3	chr19	55774098	55775098	+	818.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	32788.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	17.0	42.5	28.5	16.0	43.0	22.5
Merged-chr7-128705884-4	chr7	128705348	128706348	+	818.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145955, intron 11 of 15)	intron (NM_145955, intron 11 of 15)	16978.0	NM_001346517	101490.0	Mm.490344	NM_178641	ENSMUSG00000042105	Inpp5f	5830435P03Rik|AI115354|AW561896|SAC2|cI-27|hSAC2|mKIAA0966	inositol polyphosphate-5-phosphatase F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34619220-4	chr17	34618728	34619728	+	818.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302395, intron 7 of 8)	intron (NM_001302395, intron 7 of 8)	-3257.0	NM_152922	81701.0	Mm.231343	NM_152922	ENSMUSG00000015467	Egfl8	Ng3	EGF-like domain 8	protein-coding	2.5	0.5	3.0	2.5	2.0	3.0
Merged-chr11-68473651-2	chr11	68473151	68474151	+	818.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	-29368.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99293977-4	chr5	99293469	99294469	+	818.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41042.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	1.5	13.0	21.0	17.0	34.0	13.5
Merged-chr13-52085252-4	chr13	52084756	52085756	+	818.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11485.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45718650-2	chr17	45718150	45719150	+	818.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15194.0	NM_028164	72240.0	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20493580-4	chr9	20493106	20494106	+	818.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110309)	promoter-TSS (NM_001110309)	-860.0	NM_001110309	235028.0	Mm.297660	NM_146221	ENSMUSG00000059475	Zfp426	2900057C04Rik|KRAB1|Zfo61|Zfp68-rs1|Znf426|mKIAA4237	zinc finger protein 426	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92911668-7	chr1	92911350	92912350	+	818.852356	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181405, intron 1 of 10)	intron (NM_181405, intron 1 of 10)	1025.0	NM_181405	108657.0	Mm.200971	NM_181405	ENSMUSG00000026269	Rnpepl1	1110014H17Rik|AI894167	arginyl aminopeptidase (aminopeptidase B)-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27708015-2	chr15	27707515	27708515	+	818.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26473.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4417390-2	chr19	4416890	4417890	+	818.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20313.0	NM_001001984	225876.0	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	0.0	2.0	1.0	0.0	2.0	1.0
Merged-chr12-112659296-2	chr12	112658796	112659796	+	818.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105904)	promoter-TSS (NR_105904)	55.0	NR_105904	102465566.0		NR_105904	ENSMUSG00000098380	Mir6939	Gm27498|mmu-mir-6939	microRNA 6939	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124617552-4	chr2	124617028	124618028	+	818.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	7232.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35162059-3	chr2	35161564	35162564	+	818.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_012018, exon 30 of 44)	exon (NM_012018, exon 30 of 44)	29830.0	NM_001290635	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128768279-3	chr2	128767879	128768879	+	818.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 8 of 18)	intron (NM_008587, intron 8 of 18)	-49924.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	15.5	19.0	30.0	20.0	19.5	27.5
Merged-chr14-70055741-2	chr14	70055241	70056241	+	818.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-21704.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128399704-4	chr7	128399202	128400202	+	818.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 3 of 4)	MTC|LTR|ERVL-MaLR	18470.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144381175-4	chr3	144380717	144381717	+	818.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-175962.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114750300-4	chr11	114749839	114750839	+	818.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001034878, exon 9 of 13)	exon (NM_001034878, exon 9 of 13)	-15050.0	NM_001102615	286942.0	Mm.308713	NM_001102615	ENSMUSG00000010021	Kif19a	Kif19	kinesin family member 19A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-77761598-1	chr1	77761098	77762098	+	818.799988	f0_c57.idr	Intergenic	Intergenic	-246510.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	0.0	0.0	0.0	5.0	3.0	0.0
Merged-chr11-58588231-3	chr11	58587704	58588704	+	818.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7367.0	NM_207153	258261.0	Mm.303171	NM_207153	ENSMUSG00000060765	Olfr325	MOR275-5	olfactory receptor 325	protein-coding	5.0	0.0	0.0	0.0	6.0	1.0
Merged-chr15-85010396-3	chr15	85009936	85010936	+	818.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6705.0	NM_023478	22270.0	Mm.46214	NM_023478	ENSMUSG00000022435	Upk3a	1110017C07Rik|UP3a|UPIII|Upk3	uroplakin 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86924019-4	chr12	86923525	86924525	+	818.766663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23016.0	NM_001289431	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78594417-2	chr15	78593904	78594904	+	818.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2643.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0.0	6.0	2.0	0.0	0.5	3.0
Merged-chr13-112399331-2	chr13	112398831	112399831	+	818.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-64739.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167621484-2	chr2	167620984	167621984	+	818.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_023230, intron 1 of 3)	RSINE1|SINE|B4	10521.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90892908-2	chr5	90892408	90893408	+	818.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008176, exon 4 of 4)	3' UTR (NM_008176, exon 4 of 4)	1663.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0.0	0.0	0.0	0.0	3.0	1.0
Merged-chr7-96408696-2	chr7	96408097	96409097	+	818.75	f0_balb.idr|f1_balb.idr	intron (NM_011858, intron 2 of 32)	intron (NM_011858, intron 2 of 32)	-66633.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	0.0	3.5	2.0	12.5	2.0	15.0
Merged-chr7-98962960-7	chr7	98962410	98963410	+	818.742859	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 12 of 14)	ORR1B1|LTR|ERVL-MaLR	124065.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79392807-4	chr8	79392318	79393318	+	818.733337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	6650.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65555124-3	chr18	65554621	65555621	+	818.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 1 of 6)	LTR16E1|LTR|ERVL	-25109.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr1-133679652-3	chr1	133679162	133680162	+	818.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172842, exon 6 of 6)	3' UTR (NM_172842, exon 6 of 6)	10354.0	NM_172842	240754.0	Mm.36534	NM_172842	ENSMUSG00000051998	Lax1	A530029E09|E430019B13Rik	lymphocyte transmembrane adaptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-127149753-6	chr6	127149299	127150299	+	818.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040273, exon 1 of 3)	non-coding (NR_040273, exon 1 of 3)	173.0	NR_040273	77558.0	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62488476-4	chr10	62487972	62488972	+	818.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1667.0	NM_001358543	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106888856-4	chr9	106888371	106889371	+	818.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029103, exon 4 of 4)	3' UTR (NM_029103, exon 4 of 4)	-1871.0	NM_175402	109095.0	Mm.431589	NM_175402	ENSMUSG00000074102	Rbm15b	1810017N16Rik	RNA binding motif protein 15B	protein-coding	4.0	20.5	8.0	1.5	2.5	10.0
Merged-chr16-20241315-3	chr16	20240804	20241804	+	818.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198599)	promoter-TSS (NM_198599)	54.0	NM_198599	208158.0	Mm.326383	NM_198599	ENSMUSG00000041205	Map6d1	A330066I15Rik	MAP6 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101419735-3	chr7	101419242	101420242	+	818.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1949.0	NM_001008548	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	0.0	0.0	0.5	0.5	0.0	0.0
Merged-chr18-21000432-3	chr18	20999943	21000943	+	818.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303005)	promoter-TSS (NM_001303005)	-857.0	NM_019706	56515.0	Mm.253542	NM_019706	ENSMUSG00000024317	Rnf138	2410015A17Rik|2810480D20Rik|STRIN|Trif|Trif-d	ring finger protein 138	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124507568-3	chr6	124507069	124508069	+	818.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181344, intron 5 of 5)	L1MB7|LINE|L1	-5052.0	NM_023143	50909.0	Mm.333375	NM_023143	ENSMUSG00000055172	C1ra	AI132558|C1r|mC1rA	complement component 1, r subcomponent A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-91290735-3	chr15	91290229	91291229	+	818.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033633, intron 7 of 9)	intron (NM_001033633, intron 7 of 9)	-98722.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69356712-3	chr12	69356207	69357207	+	818.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025441, intron 1 of 32)	MIRb|SINE|MIR	469.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	4.5	8.0	9.0	8.0	3.5	7.0
Merged-chr17-56475349-3	chr17	56474861	56475861	+	818.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252455, intron 1 of 27)	intron (NM_001252455, intron 1 of 27)	1119.0	NM_001252455	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-10776545-3	chr18	10776035	10777035	+	818.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144860, intron 11 of 20)	intron (NM_144860, intron 11 of 20)	6441.0	NR_029547	387151.0		NR_029547	ENSMUSG00000065399	Mir133a-1	Mirn133|Mirn133a-1|mir-133a-1	microRNA 133a-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42842503-3	chr10	42841998	42842998	+	818.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18014.0	NM_172938	268297.0	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	Scm polycomb group protein like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44118028-3	chr19	44117525	44118525	+	818.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081077, intron 10 of 13)	intron (NM_001081077, intron 10 of 13)	-10548.0	NM_001162410	12675.0	Mm.3996	NM_007700	ENSMUSG00000025199	Chuk	AI256658|Chuk1|Fbx24|Fbxo24|IKBKA|IKK alpha|IKK1|Ikka|NFKBIKA	conserved helix-loop-helix ubiquitous kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75213931-3	chr8	75213455	75214455	+	818.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029182)	promoter-TSS (NM_029182)	11.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	0.0	0.0	1.5	0.0	0.0	1.0
Merged-chr13-78194976-3	chr13	78194523	78195523	+	818.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010151, intron 2 of 2)	CpG	1426.0	NM_001347538	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-53607665-2	chr8	53607168	53608168	+	818.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146208, intron 4 of 9)	MTB|LTR|ERVL-MaLR	31397.0	NM_146208	234258.0	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98374788-3	chr7	98374284	98375284	+	818.644409	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4c|LINE|L1	-13456.0	NM_001168539	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	6.0	1.0	0.5	3.0	1.0	2.0
Merged-chr10-41883911-4	chr10	41883441	41884441	+	818.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162908, intron 1 of 9)	intron (NM_001162908, intron 1 of 9)	-3498.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100362723-4	chr11	100362262	100363262	+	818.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6621.0	NM_010404	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0.0	0.0	0.0	4.0	0.0	0.0
Merged-chr11-57517208-4	chr11	57516665	57517665	+	818.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026342, intron 1 of 13)	MTE2a|LTR|ERVL-MaLR	1479.0	NM_001168667	67726.0	Mm.25632	NM_026342	ENSMUSG00000020523	Fam114a2	1810073G14Rik|9030624B09Rik	family with sequence similarity 114, member A2	protein-coding	13.5	10.5	4.0	4.5	4.5	7.0
Merged-chr5-113954604-4	chr5	113954091	113955091	+	818.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198109, intron 10 of 14)	intron (NM_198109, intron 10 of 14)	39166.0	NM_198109	231637.0	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot protein phosphatase 1	protein-coding	4.0	3.5	0.0	0.0	0.0	3.0
Merged-chr3-104403863-4	chr3	104403371	104404371	+	818.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108047.0	NM_001025067	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	2.5	13.5	3.0	0.0	13.0	3.0
Merged-chr8-35104908-2	chr8	35104426	35105426	+	818.599976	f0_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-139236.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	10.0	0.5	0.0	8.5	3.5	3.5
Merged-chr5-66076943-4	chr5	66076526	66077526	+	818.59375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	21153.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146655648-2	chr5	146655148	146656148	+	818.583313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70409.0	NM_001359057	14738.0	Mm.153539	NM_008151	ENSMUSG00000041468	Gpr12	Gpcr01|Gpcr12|Gpcr20|Gpcr21	G-protein coupled receptor 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93636385-3	chr1	93635885	93636885	+	818.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021537)	promoter-TSS (NM_021537)	-658.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	14.5	25.5	21.0	12.5	20.5	11.0
Merged-chr19-7264215-2	chr19	7263715	7264715	+	818.583313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3179.0	NM_054048	104383.0	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156860509-3	chr1	156859937	156860937	+	818.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028333, exon 5 of 5)	exon (NM_028333, exon 5 of 5)	21414.0	NM_028333	72713.0	Mm.389206	NM_028333	ENSMUSG00000033544	Angptl1	2810039D03Rik|ANG3|ANGPT3|ANGY|ARP1	angiopoietin-like 1	protein-coding	31.5	44.0	30.0	10.0	37.5	52.5
Merged-chr14-73041777-3	chr14	73041294	73042294	+	818.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162412, intron 2 of 4)	intron (NM_001162412, intron 2 of 4)	7320.0	NM_133720	70086.0	Mm.158324	NM_133720	ENSMUSG00000033470	Cysltr2	2300001H05Rik|CYSLT2R|Cltr2|Cyslt2	cysteinyl leukotriene receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-113805178-3	chr9	113804687	113805687	+	818.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286603, intron 1 of 4)	intron (NM_001286603, intron 1 of 4)	-7399.0	NM_001286601	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-53890539-4	chr1	53890073	53891073	+	818.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 15 of 28)	intron (NM_001001883, intron 15 of 28)	41149.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	5.0	13.5	13.5	1.0	13.0	5.0
Merged-chr1-154076186-3	chr1	154075685	154076685	+	818.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-125002.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35426239-2	chr17	35425735	35426735	+	818.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207648, intron 3 of 4)	intron (NM_207648, intron 3 of 4)	1358.0	NM_207648	110557.0	Mm.439827	NM_207648	ENSMUSG00000073409	H2-Q6	0610037M15Rik|H-2Q6|Qa-6|Qa6	histocompatibility 2, Q region locus 6	protein-coding	0.0	0.5	1.0	0.0	0.5	1.0
Merged-chr18-47366925-2	chr18	47366425	47367425	+	818.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311097, intron 1 of 17)	CpG	1943.0	NM_018744	20358.0	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50991313-4	chr14	50990827	50991827	+	818.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-16424.0	NM_001162863	75019.0	Mm.318775	NM_029145	ENSMUSG00000021872	Rnase10	4930474F22Rik|Rah1	ribonuclease, RNase A family, 10 (non-active)	protein-coding	10.0	7.5	14.5	9.0	5.5	5.5
Merged-chr4-3481796-2	chr4	3481281	3482281	+	818.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55309.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	3.5	1.5	0.0	0.0	0.0	0.0
Merged-chr15-73599341-2	chr15	73598841	73599841	+	818.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357747, intron 2 of 7)	intron (NM_001357747, intron 2 of 7)	-2815.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-42246561-2	chr13	42246061	42247061	+	818.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-54915.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136677173-2	chr1	136676673	136677673	+	818.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6223.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81425457-2	chr10	81424957	81425957	+	818.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 1 of 8)	intron (NM_026756, intron 1 of 8)	1716.0	NM_008688	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105718520-2	chr3	105718020	105719020	+	818.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175398, exon 2 of 2)	3' UTR (NM_175398, exon 2 of 2)	13062.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr17-84419916-2	chr17	84419416	84420416	+	818.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 21 of 37)	intron (NM_183021, intron 21 of 37)	46292.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30750212-3	chr2	30749714	30750714	+	818.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	29004.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107096513-2	chr3	107096031	107097031	+	818.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5036.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	12.0	11.5	24.5	12.5	24.0	21.5
Merged-chr15-73743335-2	chr15	73742835	73743835	+	818.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	-4691.0	NM_008975	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127098200-2	chr10	127097700	127098700	+	818.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177614, intron 11 of 13)	intron (NM_177614, intron 11 of 13)	19293.0	NM_001033263	216439.0	Mm.336761	NM_001033263	ENSMUSG00000025422	Agap2	AGAP-2|Centg1|PIKE|cnt-g1|mKIAA0167	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117431424-2	chr8	117430924	117431924	+	818.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 9 of 20)	intron (NM_028941, intron 9 of 20)	-21599.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37135671-4	chr19	37135194	37136194	+	818.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290829, intron 3 of 9)	(T)n|Simple_repeat|Simple_repeat	-38149.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75699000-2	chr2	75698500	75699500	+	818.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132727, intron 1 of 1)	intron (NR_132727, intron 1 of 1)	5663.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171159798-2	chr1	171159298	171160298	+	818.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008623, exon 7 of 8)	exon (NM_008623, exon 7 of 8)	4280.0	NM_001315500	17528.0	Mm.9986	NM_008623	ENSMUSG00000056569	Mpz	Mpp|P-zero|P0	myelin protein zero	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138162106-2	chr5	138161606	138162606	+	818.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_012002, intron 3 of 9)	intron (NM_012002, intron 3 of 9)	1004.0	NM_012002	26893.0	Mm.3981	NM_012002	ENSMUSG00000019494	Cops6	Sgn3|VIP/MOV34	COP9 signalosome subunit 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127477092-2	chr7	127476592	127477592	+	818.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145589)	TTS (NM_145589)	5478.0	NM_145589	233895.0	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61944792-2	chr18	61944266	61945266	+	818.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8309.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	3.0	0.0	0.5	2.0	0.0	6.0
Merged-chr7-19524339-2	chr7	19523839	19524839	+	818.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_027116, exon 4 of 4)	exon (NM_027116, exon 4 of 4)	5608.0	NM_027116	69547.0	Mm.77325	NM_027116	ENSMUSG00000060621	Nkpd1	2310015G09Rik	NTPase, KAP family P-loop domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21716429-2	chr9	21715929	21716929	+	818.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-7147.0	NM_001252658	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110683454-2	chr12	110682954	110683954	+	818.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025488)	promoter-TSS (NM_025488)	-835.0	NM_025488	66323.0	Mm.273316	NM_025488	ENSMUSG00000056508	1700001K19Rik	-	RIKEN cDNA 1700001K19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-129575239-2	chr7	129574739	129575739	+	818.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16624.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38534667-2	chr2	38534167	38535167	+	818.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159631, intron 1 of 9)	B4A|SINE|B4	22791.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128130876-2	chr2	128130376	128131376	+	818.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001284410, exon 4 of 4)	3' UTR (NM_001284410, exon 4 of 4)	3301.0	NM_001284410	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123620231-4	chr5	123619729	123620729	+	818.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359224, intron 12 of 18)	intron (NM_001359224, intron 12 of 18)	-47214.0	NM_029929	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	3.5	25.5	12.0	1.0	12.0	13.0
Merged-chr2-157078614-4	chr2	157078113	157079113	+	818.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001164663, exon 1 of 15)	exon (NM_001164663, exon 1 of 15)	652.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72617600-2	chr6	72617100	72618100	+	818.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009444)	promoter-TSS (NM_009444)	-600.0	NM_009443	22134.0	Mm.246563	NM_009443	ENSMUSG00000056429	Tgoln1	AU015504|D6Ertd384e|TGN38|TGN38A|Ttgn1	trans-golgi network protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115599344-2	chr11	115598855	115599855	+	818.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173048, intron 1 of 16)	intron (NM_173048, intron 1 of 16)	4561.0	NM_001252067	260302.0	Mm.119479	NM_173048	ENSMUSG00000020740	Gga3	C230037M19Rik|mKIAA0154	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding	18.0	40.0	17.5	7.0	22.0	9.0
Merged-chr3-79861158-4	chr3	79860657	79861657	+	818.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18495.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	0.5	1.0	0.0	0.0	0.0	0.0
Merged-chr2-117961734-2	chr2	117961234	117962234	+	818.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	L1M5|LINE|L1	139806.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80799395-3	chr7	80798896	80799896	+	818.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	3935.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	4.5	11.0	7.5	2.0	8.0	4.5
Merged-chr13-107759625-2	chr13	107759125	107760125	+	818.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	72228.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111710888-2	chr12	111710388	111711388	+	818.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_027404, exon 2 of 2)	exon (NM_027404, exon 2 of 2)	2065.0	NM_001324481	70369.0	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-16461954-2	chr5	16461454	16462454	+	818.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	-91541.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46909258-2	chr18	46908758	46909758	+	818.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12557.0	NM_001033446	381142.0	Mm.329423	NM_001033446	ENSMUSG00000073568	Arl14epl	Gm949	ADP-ribosylation factor-like 14 effector protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53337763-3	chr4	53337277	53338277	+	818.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67545.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-10541419-2	chr18	10540919	10541919	+	818.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083628, intron 21 of 32)	intron (NM_001083628, intron 21 of 32)	68933.0	NM_001081222	77805.0	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66052242-2	chr5	66051742	66052742	+	818.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	ORR1F|LTR|ERVL-MaLR	45937.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3080547-2	chr4	3080047	3081047	+	818.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91536.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143510578-3	chr5	143510064	143511064	+	818.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347530, intron 3 of 6)	intron (NM_001347530, intron 3 of 6)	17429.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118926271-6	chr9	118925732	118926732	+	818.422241	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133710)	promoter-TSS (NM_133710)	-304.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0.0	0.0	3.5	2.0	0.0	17.5
Merged-chr7-34198072-4	chr7	34197564	34198564	+	818.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1394.0	NM_001360710	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29649904-4	chr2	29649418	29650418	+	818.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	30198.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142879523-4	chr5	142879011	142880011	+	818.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033312, intron 3 of 4)	intron (NM_001033312, intron 3 of 4)	15727.0	NM_001033312	231863.0	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-66863937-3	chr1	66863449	66864449	+	818.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007381)	promoter-TSS (NM_007381)	-640.0	NM_007381	11363.0	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35755713-3	chr16	35755173	35756173	+	818.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	intron (NM_153550, intron 1 of 8)	13683.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	30.0	69.0	53.5	33.5	96.5	58.0
Merged-chr10-80587611-3	chr10	80587111	80588111	+	818.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145421, intron 1 of 4)	intron (NM_145421, intron 1 of 4)	2730.0	NM_145421	216169.0	Mm.29802	NM_145421	ENSMUSG00000003346	Abhd17a	1700013O15Rik|BC005632|D10Bwg1364e|Fam108a	abhydrolase domain containing 17A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70996176-3	chr17	70995667	70996667	+	818.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001357820, exon 3 of 4)	exon (NM_001357820, exon 3 of 4)	1845.0	NM_001357820	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	0.5	1.5	4.5	9.5	78.0	47.5
Merged-chr8-18946050-4	chr8	18945570	18946570	+	818.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176951, intron 2 of 6)	intron (NM_176951, intron 2 of 6)	4801.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	0.0	0.0	4.0	1.0	0.0	0.5
Merged-chr10-80156188-4	chr10	80155687	80156687	+	818.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347117, intron 7 of 7)	intron (NM_001347117, intron 7 of 7)	6505.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43581358-5	chr17	43580905	43581905	+	818.34668	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	10104.0	NR_045445	73504.0	Mm.9277	NR_045444	ENSMUSG00000090307	1700071M16Rik	-	RIKEN cDNA 1700071M16 gene	ncRNA	23.0	81.5	42.5	29.5	65.5	60.5
Merged-chr16-20539829-4	chr16	20539340	20540340	+	818.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302970, intron 3 of 10)	intron (NM_001302970, intron 3 of 10)	4360.0	NM_009679	11773.0	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127525905-2	chr10	127525405	127526405	+	818.333374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_183297, exon 2 of 2)	3' UTR (NM_183297, exon 2 of 2)	-3461.0	NM_028230	108037.0	Mm.29890	NM_028230	ENSMUSG00000025403	Shmt2	2700043D08Rik|AA408223|AA986903|SHMT	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31082360-2	chr6	31081860	31082860	+	818.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19267.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30584198-2	chr14	30583695	30584695	+	818.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	12046.0	NR_037237	100526475.0		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	4.0	9.5	16.5	1.0	4.5	1.5
Merged-chr10-66908813-4	chr10	66908327	66909327	+	818.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	11557.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32082534-2	chr2	32082034	32083034	+	818.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_151493, intron 2 of 5)	intron (NR_151493, intron 2 of 5)	1171.0	NM_175511	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67230953-2	chr7	67230453	67231453	+	818.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291191)	TTS (NM_001291191)	8337.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120287361-2	chr4	120286861	120287861	+	818.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194060)	promoter-TSS (NM_194060)	-100.0	NM_194060	329934.0	Mm.277090	NM_194060	ENSMUSG00000052135	Foxo6	-	forkhead box O6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67486694-1	chr18	67486194	67487194	+	818.333313	f0_balb.idr	Intergenic	L1_Mur3|LINE|L1	21845.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3301595-4	chr12	3301091	3302091	+	818.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 1 of 5)	intron (NM_016676, intron 1 of 5)	8378.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90185275-3	chr16	90184761	90185761	+	818.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35481.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-151001863-3	chr2	151001364	151002364	+	818.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207204, intron 1 of 23)	intron (NM_207204, intron 1 of 23)	7534.0	NM_207204	78177.0	Mm.120911	NM_207204	ENSMUSG00000068115	Ninl	4930519N13Rik|Gm1004|Gm1634|mKIAA0980	ninein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-17490448-3	chr18	17489945	17490945	+	818.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90545.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-115170729-3	chr10	115170226	115171226	+	818.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173391, intron 5 of 10)	intron (NM_173391, intron 5 of 10)	14296.0	NM_173391	216343.0	Mm.31597	NM_173391	ENSMUSG00000006764	Tph2	AU043594|Ntph	tryptophan hydroxylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21508427-2	chr9	21507927	21508927	+	818.333313	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001253894)	TTS (NM_001253894)	1467.0	NM_001324510	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109368297-4	chr11	109367759	109368759	+	818.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010303, intron 2 of 3)	intron (NM_010303, intron 2 of 3)	-4605.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127547660-1	chr10	127547160	127548160	+	818.333313	f1_balb.idr	intron (NM_008512, intron 70 of 88)	RLTR11A2|LTR|ERVK	-13101.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.0	3.5	9.5	0.0	1.0	1.0
Merged-chr2-44982614-4	chr2	44982046	44983046	+	818.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001355289)	TTS (NM_001355289)	40631.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-124257635-3	chr9	124257150	124258150	+	818.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55044.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127671796-3	chr10	127671199	127672199	+	818.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	4576.0	NR_045171	72243.0	Mm.482902	NR_045171	ENSMUSG00000040195	1700012D01Rik	-	RIKEN cDNA 1700012D01 gene	ncRNA	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4723587-6	chr16	4723091	4724091	+	818.277771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2770.0	NM_001136066	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-74975689-4	chr5	74975186	74976186	+	818.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26492.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66165880-4	chr5	66165362	66166362	+	818.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040695)	TTS (NR_040695)	-13908.0	NM_001127382	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	2.5	0.0	4.0	2.5	0.0	4.0
Merged-chr11-121720538-4	chr11	121720039	121721039	+	818.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18112.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104373914-2	chr8	104373391	104374391	+	818.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_153582, intron 1 of 3)	RSINE1|SINE|B4	21916.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-110373035-2	chr13	110372524	110373524	+	818.25	f0_balb.idr|f0_c57.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-15852.0	NM_177713	238875.0	Mm.30533	NM_177713	ENSMUSG00000046006	Gapt	9830130M13Rik	Grb2-binding adaptor, transmembrane	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr7-46838294-4	chr7	46837771	46838771	+	818.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7533.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-9031925-4	chr17	9031398	9032398	+	818.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43565.0	NM_001347544	66931.0	Mm.67591	NM_025851	ENSMUSG00000023873	1700010I14Rik	-	RIKEN cDNA 1700010I14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3781297-4	chr4	3781002	3782002	+	818.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 11 of 12)	intron (NM_001111096, intron 11 of 12)	54153.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0.5	6.0	5.0	1.0	0.5	1.0
Merged-chr4-141273975-2	chr4	141273475	141274475	+	818.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-4464.0	NR_151527	100503810.0		NR_151527	ENSMUSG00000085395	Gm13056	-	predicted gene 13056	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135793112-4	chr7	135792656	135793656	+	818.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76777.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-114752378-4	chr9	114751810	114752810	+	818.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	21107.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	2.0	4.0	3.5	1.0	2.5	1.5
Merged-chr2-165325291-2	chr2	165324791	165325791	+	818.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_080287, intron 1 of 20)	intron (NM_080287, intron 1 of 20)	1188.0	NM_080287	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111273515-2	chr9	111273031	111274031	+	818.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_175266, exon 1 of 1)	exon (NM_175266, exon 1 of 1)	1686.0	NM_175266	77781.0	Mm.209005	NM_175266	ENSMUSG00000046785	Epm2aip1	A930003G21Rik|mKIAA0766	EPM2A (laforin) interacting protein 1	protein-coding	0.5	4.0	13.5	0.0	3.5	3.0
Merged-chr1-165670363-2	chr1	165669863	165670863	+	818.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	-35822.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70598343-2	chr14	70597843	70598843	+	818.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_194345, intron 1 of 16)	intron (NM_194345, intron 1 of 16)	1492.0	NM_194345	239170.0	Mm.247582	NM_194345	ENSMUSG00000022095	Fam160b2	G430067P06Rik|Rai16	family with sequence similarity 160, member B2	protein-coding	12.5	1.5	9.0	6.0	6.5	3.5
Merged-chr9-119403135-3	chr9	119402624	119403624	+	818.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007397, intron 1 of 9)	CpG	946.0	NM_001313757	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	0.0	2.5	1.0	0.0	7.5	0.0
Merged-chr10-45960446-4	chr10	45959953	45960953	+	818.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	152749.0	NR_040624	320363.0	Mm.123343	NR_040624	ENSMUSG00000110874	D030045P18Rik	-	RIKEN cDNA D030045P18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27229119-2	chr3	27228619	27229619	+	818.1999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 3 of 4)	intron (NM_178772, intron 3 of 4)	46115.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7441808-3	chr19	7441315	7442315	+	818.188904	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053076, intron 1 of 6)	intron (NM_053076, intron 1 of 6)	19242.0	NR_105957	102466781.0		NR_105957	ENSMUSG00000098293	Mir6991	Gm27966|mmu-mir-6991	microRNA 6991	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4902562-4	chr16	4902072	4903072	+	818.174988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 1 of 17)	intron (NM_001357062, intron 1 of 17)	16472.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-72535381-4	chr12	72534905	72535905	+	818.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026327)	promoter-TSS (NM_026327)	-952.0	NM_026327	67708.0	Mm.11233	NM_026327	ENSMUSG00000034501	Pcnx4	1810048J11Rik|4932413O10|AU017192|Pcnxl4	pecanex homolog 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38824068-4	chr2	38823582	38824582	+	818.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010264, intron 3 of 10)	intron (NM_010264, intron 3 of 10)	-28653.0	NR_029568	387176.0		NR_029568	ENSMUSG00000065423	Mir181a-2	Mirn181|Mirn181a|Mirn181a-2|miR-181|mir-181a|mir-181a-2	microRNA 181a-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134659481-4	chr6	134658947	134659947	+	818.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170479, intron 2 of 3)	RSINE1|SINE|B4	18507.0	NM_026371	67774.0	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	4.0	2.0	2.5	9.0	0.0	0.5
Merged-chr7-66310135-4	chr7	66309637	66310637	+	818.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 6 of 33)	intron (NM_146191, intron 6 of 33)	71587.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35122103-4	chr17	35121577	35122577	+	818.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303476)	promoter-TSS (NM_001303476)	-24.0	NM_001303446	13001.0	Mm.378901	NM_009975	ENSMUSG00000024387	Csnk2b	CK II beta	casein kinase 2, beta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59259956-4	chr4	59259452	59260452	+	818.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105031)	promoter-TSS (NR_105031)	-99.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	20.5	6.0	19.5	8.0	10.5	9.0
Merged-chr10-78013281-2	chr10	78012781	78013781	+	818.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3474.0	NM_001358793	18641.0	Mm.269649	NM_008826	ENSMUSG00000020277	Pfkl	AA407869|ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver, B-type	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-54154153-2	chr10	54153653	54154653	+	818.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78231.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25355643-2	chr2	25355143	25356143	+	818.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_031843, exon 4 of 13)	exon (NM_031843, exon 4 of 13)	689.0	NM_031843	83768.0	Mm.21440	NM_031843	ENSMUSG00000026958	Dpp7	DPPII|Dpp2|QPP	dipeptidylpeptidase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27947439-2	chr15	27946939	27947939	+	818.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	78409.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83570401-4	chr11	83569893	83570893	+	818.145813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8243.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95960922-8	chr13	95960413	95961413	+	818.144043	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029210, exon 13 of 13)	3' UTR (NM_029210, exon 13 of 13)	-68991.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	46.5	151.5	127.5	32.0	36.5	14.5
Merged-chr19-45812302-4	chr19	45811774	45812774	+	818.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276358)	promoter-TSS (NM_001276358)	17.0	NM_001276358	80906.0	Mm.213204	NM_030716	ENSMUSG00000025221	Kcnip2	KChIP2	Kv channel-interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63413758-4	chr14	63413284	63414284	+	818.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007549, intron 1 of 12)	intron (NM_007549, intron 1 of 12)	3403.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149875564-4	chr4	149875148	149876148	+	818.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79358.0	NM_029035	74646.0	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	5.0	21.5	12.5	0.0	2.0	5.0
Merged-chr16-87676425-3	chr16	87675950	87676950	+	818.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-22504.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83711174-4	chr6	83710686	83711686	+	818.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011912)	promoter-TSS (NM_011912)	-78.0	NM_011912	24113.0	Mm.307165	NM_011912	ENSMUSG00000034777	Vax2	Dres93	ventral anterior homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3576996-2	chr19	3576496	3577496	+	818.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1247.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	2.5	0.0	3.5	0.0	0.0	0.0
Merged-chr10-116515288-4	chr10	116514755	116515755	+	818.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037848, intron 4 of 4)	intron (NM_001037848, intron 4 of 4)	12694.0	NM_001359253	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105824405-4	chr3	105823879	105824879	+	818.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8812.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	33.0	48.5	89.5	23.0	76.0	65.5
Merged-chr3-69374157-4	chr3	69373595	69374595	+	818.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178726, intron 1 of 3)	MLT1A0|LTR|ERVL-MaLR	57177.0	NM_178726	242083.0	Mm.40577	NM_178726	ENSMUSG00000027784	Ppm1l	3222401G13|5930404J21Rik|AI481720|AW045850|PP2C|PP2Cepsilon|Pp2ce|Ppp2ce|mKIAA4175	protein phosphatase 1 (formerly 2C)-like	protein-coding	3.0	10.5	9.0	2.0	20.5	10.5
Merged-chr16-18052845-4	chr16	18052330	18053330	+	818.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010047)	promoter-TSS (NM_010047)	-30.0	NM_010047	13353.0	Mm.27155	NM_010047	ENSMUSG00000003531	Dgcr6	-	DiGeorge syndrome critical region gene 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101217339-4	chr4	101216808	101217808	+	818.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 1 of 24)	intron (NM_146145, intron 1 of 24)	47974.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108718304-3	chr8	108717807	108718807	+	818.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	3663.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106697227-3	chr8	106696688	106697688	+	818.044434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173037, intron 5 of 17)	MTD|LTR|ERVL-MaLR	14120.0	NM_173037	272538.0	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	6.0	10.5	0.5	0.0	3.5	6.0
Merged-chr8-8441195-3	chr8	8440708	8441708	+	818.044434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	219565.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86578771-2	chr6	86578271	86579271	+	818.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49403.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-133039656-3	chr1	133039144	133040144	+	818.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6368.0	NM_001099276	240752.0	Mm.387308	NM_001099276	ENSMUSG00000026447	Pik3c2b	C330011J12Rik|Gm199|PI3K-C2beta|PI3KC2beta	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta	protein-coding	4.5	3.5	4.5	0.0	0.0	1.5
Merged-chr1-180421777-2	chr1	180421277	180422277	+	818.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081175, exon 8 of 8)	exon (NM_001081175, exon 8 of 8)	61727.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10358935-3	chr17	10358447	10359447	+	818.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34345.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25301296-2	chr14	25300796	25301796	+	818.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157889.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-83064952-2	chr1	83064452	83065452	+	818.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4022.0	NM_027778	71386.0	Mm.389133	NM_027778	ENSMUSG00000101315	Krtap28-13	5530401N06Rik	keratin associated protein 28-13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33055846-1	chr16	33055346	33056346	+	818.0	f1_c57bl6.idr	promoter-TSS (NM_021338)	promoter-TSS (NM_021338)	340.0	NM_178378	69707.0	Mm.227918	NM_178378	ENSMUSG00000035578	Iqcg	2400003L07Rik|G1-374-12|esgd12d|repro1|stubby12d	IQ motif containing G	protein-coding	26.5	47.0	42.5	32.5	68.0	54.0
Merged-chr7-48883652-2	chr7	48883152	48884152	+	818.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155436, intron 1 of 1)	intron (NR_155436, intron 1 of 1)	-2056.0	NM_001360812	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-129000843-1	chr5	129000343	129001343	+	818.0	f1_c57bl6.idr	intron (NR_152615, intron 1 of 11)	intron (NR_152615, intron 1 of 11)	7729.0	NR_152615	13852.0	Mm.260716	NM_007941	ENSMUSG00000029428	Stx2	AW538950|Epim|G1-536-1|Syn-2|repro34	syntaxin 2	protein-coding	2.5	1.0	2.5	3.0	6.5	0.0
Merged-chr7-28546307-1	chr7	28545807	28546807	+	818.0	f1_c57bl6.idr	exon (NM_001081115, exon 2 of 6)	exon (NM_001081115, exon 2 of 6)	947.0	NM_001081115	233038.0	Mm.224815	NM_001081115	ENSMUSG00000047586	Nccrp1	1190020J12Rik|Gm163|NCCRP-1	non-specific cytotoxic cell receptor protein 1 homolog (zebrafish)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr2-33486937-2	chr2	33486437	33487437	+	818.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18405.0	NM_001355612	71834.0	Mm.44186	NM_027947	ENSMUSG00000026788	Zbtb43	1700010E06Rik|Zfp297b|mKIAA0414	zinc finger and BTB domain containing 43	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83699816-3	chr8	83699313	83700313	+	818.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177262)	promoter-TSS (NM_177262)	-634.0	NM_177262	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	53.0	40.5	67.0	16.0	48.0	52.0
Merged-chr7-19504187-2	chr7	19503687	19504687	+	818.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	4144.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-148963263-1	chr3	148962763	148963763	+	818.0	f0_balb.idr	Intergenic	Intergenic	-8628.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	5.5	6.0	1.5	9.5	0.0	8.0
Merged-chr7-97799833-3	chr7	97799360	97800360	+	818.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357364, intron 1 of 14)	intron (NM_001357364, intron 1 of 14)	11319.0	NM_001357364	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	58.5	120.0	120.5	35.0	97.5	70.5
Merged-chr13-60645316-2	chr13	60644816	60645816	+	818.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	MTD|LTR|ERVL-MaLR	43105.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	17.5	22.0	18.5	4.5	36.5	18.5
Merged-chr6-6946665-1	chr6	6946165	6947165	+	818.0	f1_balb.idr	Intergenic	Lx3B|LINE|L1	-9353.0	NM_001077713	71238.0	Mm.389086	NM_001077713	ENSMUSG00000042505	Sdhaf3	0610005M07Rik|4933430A16Rik|Acn9	succinate dehydrogenase complex assembly factor 3	protein-coding	2.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70768202-3	chr14	70767677	70768677	+	818.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1549.0	NM_023045	65246.0	Mm.152987	NM_023045	ENSMUSG00000022100	Xpo7	4930506C02Rik|BB164534|Ranbp16|exp7	exportin 7	protein-coding	42.0	118.5	98.5	35.5	72.5	57.5
Merged-chr11-115165771-1	chr11	115165271	115166271	+	818.0	f1_balb.idr	intron (NM_012030, intron 1 of 5)	intron (NM_012030, intron 1 of 5)	2430.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	9.5	9.5	2.0	5.0	20.0	2.5
Merged-chr4-132926740-2	chr4	132926240	132927240	+	818.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-4189.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr9-108361883-2	chr9	108361383	108362383	+	818.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011678, intron 4 of 21)	intron (NM_011678, intron 4 of 21)	14052.0	NM_011678	22258.0	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112616315-2	chr12	112615815	112616815	+	818.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_198411)	TTS (NM_198411)	-3732.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167660079-4	chr2	167659520	167660520	+	818.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145538, intron 1 of 5)	intron (NM_145538, intron 1 of 5)	1524.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-6649311-2	chr13	6648811	6649811	+	818.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291071)	promoter-TSS (NM_001291071)	-540.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30374493-4	chr16	30373998	30374998	+	818.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128096, intron 2 of 33)	intron (NM_001128096, intron 2 of 33)	14032.0	NM_001128094	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	3.0	8.0	0.0	3.0	8.0	0.0
Merged-chr4-155215842-2	chr4	155215341	155216341	+	818.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	6694.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	7.5	4.5	3.5	1.0	0.0	1.5
Merged-chr4-9670096-1	chr4	9669596	9670596	+	818.0	f1_c57bl6.idr	promoter-TSS (NM_023066)	promoter-TSS (NM_023066)	-752.0	NM_001290367	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	15.5	68.5	39.0	15.5	30.0	5.5
Merged-chr7-80353685-2	chr7	80353185	80354185	+	818.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172903, intron 21 of 23)	intron (NM_172903, intron 21 of 23)	10548.0	NM_026812	68695.0	Mm.21171	NM_026812	ENSMUSG00000030532	Hddc3	1110033O09Rik|C86475|MESH1	HD domain containing 3	protein-coding	0.5	1.5	2.0	3.5	2.5	2.0
Merged-chr15-78347809-1	chr15	78347309	78348309	+	818.0	f1_balb.idr	promoter-TSS (NR_106137).2	promoter-TSS (NR_106137).2	-790.0	NR_106138	102466845.0		NR_106138	ENSMUSG00000099059	Mir7676-2	Gm27790|mmu-mir-7676-2	microRNA 7676-2	ncRNA	0.5	3.0	1.0	8.0	0.0	5.0
Merged-chr17-32318125-2	chr17	32317625	32318625	+	818.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019774, intron 2 of 13)	intron (NM_019774, intron 2 of 13)	3113.0	NM_001357760	56399.0	Mm.328945	NM_019774	ENSMUSG00000024045	Akap8	1200016A02Rik|AA673585|AKAP-8|AKAP95|AU015639	A kinase (PRKA) anchor protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105682673-1	chr5	105682173	105683173	+	818.0	f1_balb.idr	Intergenic	Intergenic	-17296.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.0	2.5	1.0	0.0	2.5	0.0
Merged-chr13-92352984-2	chr13	92352496	92353496	+	818.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311120, intron 2 of 23)	(CA)n|Simple_repeat|Simple_repeat	-1787.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	4.0	2.0	4.0	4.5	9.0	4.0
Merged-chr1-184734421-4	chr1	184733848	184734848	+	818.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1855.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44312119-2	chr19	44311619	44312619	+	818.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8948.0	NR_039574	100628619.0		NR_039574	ENSMUSG00000093315	Mir5114	mmu-mir-5114|mu-mir-5114	microRNA 5114	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94791656-2	chr13	94791156	94792156	+	818.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009321, intron 1 of 3)	intron (NM_009321, intron 1 of 3)	2713.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88854713-2	chr15	88854213	88855213	+	818.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7481.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6290935-2	chr11	6290435	6291435	+	818.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252282)	promoter-TSS (NM_001252282)	-662.0	NM_010956	18293.0	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	3.5	15.0	10.5	0.0	10.5	3.0
Merged-chr17-35419147-2	chr17	35418647	35419647	+	818.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A|LTR|ERVK	-5700.0	NM_023124	15019.0	Mm.486287	NM_023124		H2-Q8	H-2Q8|MMS10-T|Ms10t|Qa-2|Qa-8|Qa8	histocompatibility 2, Q region locus 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106354281-3	chr11	106353774	106354774	+	818.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4884.0	NM_133199	110880.0	Mm.432528	NM_133199	ENSMUSG00000001027	Scn4a	Nav1.4|SkM1|mH2	sodium channel, voltage-gated, type IV, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-124033269-2	chr9	124032769	124033769	+	818.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	11298.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-167242447-2	chr1	167241947	167242947	+	818.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030724, intron 1 of 6)	MIR|SINE|MIR	42680.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-12006875-4	chr4	12006368	12007368	+	817.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40294.0	NR_040577	100503636.0	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61134832-6	chr18	61134428	61135428	+	817.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134134, intron 19 of 20)	intron (NM_134134, intron 19 of 20)	17460.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-46810284-3	chr13	46809776	46810776	+	817.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010617, intron 14 of 37)	ORR1E|LTR|ERVL-MaLR	-82427.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-45358352-3	chr8	45357750	45358750	+	817.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153535, intron 1 of 13)	intron (NM_153535, intron 1 of 13)	24041.0	NM_153535	212326.0	Mm.51259	NM_153535	ENSMUSG00000070044	Fam149a	AW213256|mKIAA4166	family with sequence similarity 149, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-52426724-3	chr10	52426241	52427241	+	817.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030250, intron 1 of 4)	intron (NM_030250, intron 1 of 4)	9194.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98086225-4	chr7	98085725	98086725	+	817.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008663, intron 15 of 48)	intron (NM_008663, intron 15 of 48)	23023.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	35.0	58.5	38.5	24.0	41.5	20.0
Merged-chr7-45103168-3	chr7	45102505	45103505	+	817.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010189, exon 2 of 7)	exon (NM_010189, exon 2 of 7)	817.0	NM_001357117	14132.0	Mm.3303	NM_010189	ENSMUSG00000003420	Fcgrt	FcRn	Fc receptor, IgG, alpha chain transporter	protein-coding	1.0	2.5	4.0	15.5	6.5	9.0
Merged-chr6-108340536-3	chr6	108340051	108341051	+	817.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 5 of 61)	L2a|LINE|L2	127455.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	10.5	1.5	1.5	3.0	38.0	13.0
Merged-chr11-117883121-3	chr11	117882614	117883614	+	817.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9588.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18899375-3	chr2	18898822	18899822	+	817.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 3 of 9)	intron (NM_008845, intron 3 of 9)	-97504.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36580767-4	chr1	36580273	36581273	+	817.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 11 of 14)	intron (NM_001126046, intron 11 of 14)	12559.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118242854-4	chr11	118242337	118243337	+	817.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	5755.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-87890079-4	chr10	87889555	87890555	+	817.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111274, intron 2 of 4)	intron (NM_001111274, intron 2 of 4)	28944.0	NM_001111276	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17344036-4	chr10	17343535	17344535	+	817.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-248253.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-129670126-4	chr5	129669639	129670639	+	817.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172462)	promoter-TSS (NM_172462)	-51.0	NM_172462	22648.0	Mm.135067	NM_172462	ENSMUSG00000051034	Zfp11	6720465D24|Krox-6|Zfp-11	zinc finger protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99224691-5	chr5	99224329	99225329	+	817.866699	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 10 of 13)	intron (NM_181318, intron 10 of 13)	28098.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20039833-3	chr13	20039335	20040335	+	817.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50672.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	5.5	3.5	0.5	5.0	2.0	3.0
Merged-chr4-133210030-2	chr4	133209526	133210526	+	817.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008154, exon 2 of 2)	3' UTR (NM_008154, exon 2 of 2)	2510.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	10.0	0.0	2.0	12.0	0.0	0.0
Merged-chr9-13614714-2	chr9	13614214	13615214	+	817.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-5275.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	3.0	4.5	0.0	1.0	0.0	1.5
Merged-chr1-88263730-5	chr1	88263292	88264292	+	817.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040291, exon 5 of 5)	non-coding (NR_040291, exon 5 of 5)	5616.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76622819-4	chr11	76622318	76623318	+	817.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-45079.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83100251-3	chr8	83099746	83100746	+	817.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65106.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	4.0	23.0	4.5	7.0	13.5	21.0
Merged-chr11-103249063-3	chr11	103248577	103249577	+	817.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	18324.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31163390-2	chr14	31162890	31163890	+	817.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_138672, exon 3 of 69)	exon (NM_138672, exon 3 of 69)	5251.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70598705-3	chr11	70598192	70599192	+	817.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 2 of 30)	intron (NM_016713, intron 2 of 30)	-17202.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93006415-2	chr1	93005915	93006915	+	817.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177587)	promoter-TSS (NM_177587)	81.0	NM_177587	208760.0	Mm.235537	NM_177587	ENSMUSG00000045091	Aqp12	AB084104|mAQP12	aquaporin 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114824349-4	chr5	114823899	114824899	+	817.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181075)	promoter-TSS (NM_181075)	-931.0	NM_181075	330173.0	Mm.482205	NM_181075	ENSMUSG00000092486	2610524H06Rik	-	RIKEN cDNA 2610524H06 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110846126-2	chr12	110845626	110846626	+	817.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4153.0	NM_001199785	72805.0	Mm.443524	NM_028365	ENSMUSG00000021271	Zfp839	2810455K09Rik	zinc finger protein 839	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46858410-4	chr17	46857890	46858890	+	817.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26977.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135239351-2	chr4	135238851	135239851	+	817.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	ORR1D2|LTR|ERVL-MaLR	33409.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-83567881-4	chr4	83567371	83568371	+	817.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355549, intron 6 of 24)	intron (NM_001355549, intron 6 of 24)	42326.0	NM_001355378	320226.0	Mm.180032	NM_029117	ENSMUSG00000052407	Ccdc171	4930418J05Rik|4930473A06Rik|A330015D16Rik	coiled-coil domain containing 171	protein-coding	0.0	0.0	0.0	0.0	1.5	0.0
Merged-chr12-85465759-2	chr12	85465259	85466259	+	817.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-8131.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91970095-2	chr1	91969625	91970625	+	817.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_207225, intron 15 of 26)	intron (NM_207225, intron 15 of 26)	168664.0	NM_007855	13345.0	Mm.9474	NM_007855	ENSMUSG00000007805	Twist2	Dermo1|bHLHa39	twist basic helix-loop-helix transcription factor 2	protein-coding	0.0	0.0	0.0	9.5	4.0	0.0
Merged-chr12-79015050-3	chr12	79014592	79015592	+	817.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7815.0	NM_178745	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr7-45590039-4	chr7	45589543	45590543	+	817.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009737)	TTS (NM_009737)	-14867.0	NR_038165	71661.0	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55608808-3	chr14	55608249	55609249	+	817.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159417, exon 9 of 10)	exon (NM_001159417, exon 9 of 10)	4170.0	NM_001159418	16391.0	Mm.2032	NM_008394	ENSMUSG00000002325	Irf9	Irf-9|Isgf3g|p48	interferon regulatory factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141507077-4	chr4	141506590	141507590	+	817.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347235, intron 3 of 14)	intron (NM_001347235, intron 3 of 14)	31507.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	180.5	352.0	221.0	51.5	136.0	126.5
Merged-chr6-125684797-4	chr6	125684303	125685303	+	817.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 50 of 51)	intron (NM_011708, intron 50 of 51)	-5616.0	NM_153589	243634.0	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77630549-3	chr11	77630053	77631053	+	817.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22738.0	NM_144825	216965.0	Mm.340436	NM_144825	ENSMUSG00000017291	Taok1	2810468K05Rik|AU020252|D130018F14Rik|Map3k16|Markk|Psk2|mKIAA1361	TAO kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8494645-6	chr12	8494110	8495110	+	817.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5399.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-185224383-3	chr1	185223886	185224886	+	817.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163754, intron 2 of 34)	L1M4|LINE|L1	-18540.0	NR_034044	100217449.0	Mm.429560	NR_034044	ENSMUSG00000077571	Snora36b	MBI-87	small nucleolar RNA, H/ACA box 36B	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45820203-3	chr4	45819687	45820687	+	817.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018741, intron 1 of 4)	intron (NM_018741, intron 1 of 4)	6640.0	NM_018741	75426.0	Mm.3919	NM_018741	ENSMUSG00000035551	Igfbpl1	2810011G06Rik|2810453O06Rik|IGFBPL	insulin-like growth factor binding protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9082790-3	chr13	9082281	9083281	+	817.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11100.0	NM_001311117	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-60042902-4	chr1	60042380	60043380	+	817.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027407, exon 1 of 11)	5' UTR (NM_027407, exon 1 of 11)	242.0	NM_001357296	70375.0	Mm.17834	NM_027407	ENSMUSG00000026018	Ica1l	1700030B17Rik|Als2cr15|b2b3465Clo	islet cell autoantigen 1-like	protein-coding	0.0	0.0	1.5	1.0	1.0	0.0
Merged-chr5-123626853-3	chr5	123626361	123627361	+	817.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359223, intron 10 of 19)	intron (NM_001359223, intron 10 of 19)	-53846.0	NM_029929	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	0.0	0.5	0.5	0.0	0.0	0.0
Merged-chr11-117778197-2	chr11	117777697	117778697	+	817.642822	f1_balb.idr|f1_c57bl6.idr	intron (NM_145439, intron 5 of 19)	intron (NM_145439, intron 5 of 19)	1451.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114224666-4	chr6	114224175	114225175	+	817.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172890, intron 6 of 13)	intron (NM_172890, intron 6 of 13)	-57960.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25850600-3	chr14	25850083	25851083	+	817.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013469, intron 1 of 14)	intron (NM_013469, intron 1 of 14)	8428.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91724380-4	chr16	91723819	91724819	+	817.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026994, intron 1 of 11)	MT2B|LTR|ERVL	4483.0	NM_026994	66609.0	Mm.109823	NM_026994	ENSMUSG00000058240	Cryzl1	2210407J23Rik|2410006O11Rik|QOH-1	crystallin, zeta (quinone reductase)-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87405175-3	chr16	87404667	87405667	+	817.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081068, intron 17 of 29)	ORR1B1|LTR|ERVL-MaLR	27439.0	NM_001081068	78913.0	Mm.249005	NM_001081068	ENSMUSG00000052299	Ltn1	4930528H02Rik|AV266914|C87237|Listerin|Rnf160|Zfp294	listerin E3 ubiquitin protein ligase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115696788-4	chr11	115696293	115697293	+	817.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	2741.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100644050-4	chr5	100643521	100644521	+	817.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30235.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	11.5	55.5	14.0	8.0	15.0	5.5
Merged-chr6-131387132-2	chr6	131386632	131387632	+	817.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011733, intron 1 of 8)	intron (NM_011733, intron 1 of 8)	1318.0	NM_139117	56449.0	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	5.0	10.5	5.5	0.0	4.0	5.0
Merged-chr6-87840605-4	chr6	87840089	87841089	+	817.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1830.0	NM_133934	57905.0	Mm.241546	NM_133934	ENSMUSG00000030056	Isy1	5830446M03Rik|AI181014|AU020769	ISY1 splicing factor homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180890730-3	chr1	180890220	180891220	+	817.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2388.0	NM_177099	320202.0	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4143629-2	chr19	4143129	4144129	+	817.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_206973, exon 2 of 2)	exon (NM_206973, exon 2 of 2)	3830.0	NM_206973	269053.0	Mm.131677	NM_206973	ENSMUSG00000044724	Gpr152	A930009H15Rik|Gm673	G protein-coupled receptor 152	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-94603659-2	chr15	94603159	94604159	+	817.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13835.0	NM_008971	19230.0	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79112069-2	chr11	79111569	79112569	+	817.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	34404.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113846505-2	chr5	113846005	113847005	+	817.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011779, intron 8 of 10)	intron (NM_011779, intron 8 of 10)	-16004.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0.0	0.0	4.5	0.0	0.0	2.0
Merged-chr1-151572868-4	chr1	151572416	151573416	+	817.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	Lx4A|LINE|L1	1543.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89872511-2	chr3	89872011	89873011	+	817.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 9 of 9)	intron (NM_010559, intron 9 of 9)	40685.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-109094538-2	chr9	109094038	109095038	+	817.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172775)	promoter-TSS (NM_172775)	-898.0	NM_172775	235611.0	Mm.53862	NM_172775	ENSMUSG00000053646	Plxnb1	2900002G15Rik|AU042020|mKIAA0407	plexin B1	protein-coding	2.0	0.0	0.0	2.0	0.0	0.0
Merged-chr8-84207231-2	chr8	84206731	84207731	+	817.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1287.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	72.0	158.0	78.0	69.5	145.0	79.0
Merged-chr8-121654003-2	chr8	121653503	121654503	+	817.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2070.0	NM_080855	142682.0	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166583307-2	chr2	166582807	166583807	+	817.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_177782, exon 26 of 40)	exon (NM_177782, exon 26 of 40)	18785.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134141430-3	chr6	134140922	134141922	+	817.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	105722.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.0	4.5	10.0	0.0	16.5	4.0
Merged-chr3-108573729-2	chr3	108573229	108574229	+	817.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025444, intron 2 of 3)	intron (NM_025444, intron 2 of 3)	2030.0	NM_025444	99730.0	Mm.24431	NM_025444	ENSMUSG00000048100	Taf13	1810004N01Rik|2010309N11Rik|AI847295|TAFII18	TATA-box binding protein associated factor 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-6153425-2	chr7	6152925	6153925	+	817.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013012, intron 1 of 2)	intron (NM_001013012, intron 1 of 2)	2546.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21027905-2	chr9	21027405	21028405	+	817.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010493, exon 7 of 7)	exon (NM_010493, exon 7 of 7)	-1468.0	NM_023892	78369.0	Mm.30220	NM_023892	ENSMUSG00000001014	Icam4	1810015M19Rik|Cd242|ICAM-4	intercellular adhesion molecule 4, Landsteiner-Wiener blood group	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121759905-3	chr9	121759411	121760411	+	817.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033503)	promoter-TSS (NR_033503)	32.0	NR_033503	320301.0	Mm.373883	NR_033503		E530011L22Rik	-	RIKEN cDNA E530011L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6924877-3	chr4	6924383	6925383	+	817.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145711, intron 1 of 8)	intron (NM_145711, intron 1 of 8)	65840.0	NM_145711	252838.0	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148730879-2	chr2	148730379	148731379	+	817.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019632, intron 1 of 10)	intron (NM_019632, intron 1 of 10)	1541.0	NM_019632	17957.0	Mm.274308	NM_019632	ENSMUSG00000027438	Napb	Brp14|E161|I47|SNARE|b-SNAP	N-ethylmaleimide sensitive fusion protein attachment protein beta	protein-coding	2.5	6.5	4.0	2.5	2.5	4.0
Merged-chr4-44173343-4	chr4	44172837	44173837	+	817.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5054.0	NM_001038993	73469.0	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-95533849-2	chr2	95533349	95534349	+	817.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_A|LINE|L1	-784320.0	NM_001289742	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	6.5	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63142506-2	chr14	63142006	63143006	+	817.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007798, exon 10 of 10)	3' UTR (NM_007798, exon 10 of 10)	20044.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	1.5	0.5	0.5	7.0
Merged-chr19-4168042-2	chr19	4167554	4168554	+	817.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134148, intron 9 of 9)	B1_Mus2|SINE|Alu	-4671.0	NR_153659	58988.0	Mm.271937	NM_021485	ENSMUSG00000024830	Rps6kb2	S6K-beta-2|S6K2	ribosomal protein S6 kinase, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30481551-2	chr2	30481051	30482051	+	817.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7352.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127734615-2	chr10	127734106	127735106	+	817.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4932.0	NM_198035	320080.0	Mm.27258	NM_198035	ENSMUSG00000044617	Zbtb39	7030401O21Rik|mKIAA0352	zinc finger and BTB domain containing 39	protein-coding	2.0	2.0	9.5	0.5	2.0	1.0
Merged-chr3-135824544-2	chr3	135824044	135825044	+	817.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026228)	promoter-TSS (NM_026228)	-735.0	NM_026228	67547.0	Mm.30239	NM_026228	ENSMUSG00000053897	Slc39a8	4933419D20Rik|AA986696|BIGM103|ZIP-8|Zip8	solute carrier family 39 (metal ion transporter), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100029656-2	chr7	100029139	100030139	+	817.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291320, intron 9 of 10)	intron (NM_001291320, intron 9 of 10)	19721.0	NM_001291320	69121.0	Mm.285295	NM_133709	ENSMUSG00000030732	Chrdl2	1810022C01Rik|Chl2	chordin-like 2	protein-coding	0.0	0.0	2.0	1.0	0.0	4.5
Merged-chr18-77104475-2	chr18	77103975	77104975	+	817.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164170, intron 2 of 12)	intron (NM_001164170, intron 2 of 12)	38795.0	NM_001164170	17344.0	Mm.6370	NM_008602	ENSMUSG00000025423	Pias2	6330408K17Rik|AI462206|ARIP3|AU018068|Dib|Miz1|PIASxalpha|PIASxb|PIASxbeta|SIZ2	protein inhibitor of activated STAT 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99550876-2	chr12	99550376	99551376	+	817.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12965.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153150552-2	chr2	153150052	153151052	+	817.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 12 of 12)	intron (NM_001172117, intron 12 of 12)	-10749.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34727605-2	chr11	34727105	34728105	+	817.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 5 of 51)	intron (NM_033374, intron 5 of 51)	56300.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-28657292-1	chr19	28656792	28657792	+	817.5	f0_balb.idr	intron (NM_175459, intron 2 of 10)	intron (NM_175459, intron 2 of 10)	-20932.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45145238-2	chr9	45144733	45145733	+	817.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013390, intron 1 of 4)	intron (NM_001013390, intron 1 of 4)	6191.0	NM_001013390	399548.0	Mm.335112	NM_001013390	ENSMUSG00000046480	Scn4b	Gm1471	sodium channel, type IV, beta	protein-coding	0.5	1.5	0.0	1.0	2.0	0.0
Merged-chr15-89131564-4	chr15	89131058	89132058	+	817.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013871, intron 11 of 11)	intron (NM_013871, intron 11 of 11)	-2858.0	NR_028449	170787.0	Mm.203954	NM_199198	ENSMUSG00000062906	Hdac10	AW548891|Hd10	histone deacetylase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106136143-2	chr11	106135643	106136643	+	817.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 6 of 15)	intron (NM_011947, intron 6 of 15)	23784.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-104443686-2	chr7	104443186	104444186	+	817.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009099, intron 1 of 7)	L1_Mus4|LINE|L1	2439.0	NM_001357467	20128.0	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-131837173-8	chr4	131836706	131837706	+	817.479187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083119, intron 1 of 30)	CpG	1072.0	NM_011214	19273.0	Mm.4860	NM_011214	ENSMUSG00000028909	Ptpru	Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda	protein tyrosine phosphatase, receptor type, U	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-144231568-3	chr5	144231076	144232076	+	817.477783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-7961.0	NM_001356993	70381.0	Mm.239412	NM_027410	ENSMUSG00000066621	Tecpr1	2210010N04Rik|mKIAA1358	tectonin beta-propeller repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153164631-6	chr2	153164129	153165129	+	817.472229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	intron (NM_133847, intron 1 of 17)	3328.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167061756-7	chr2	167061230	167062230	+	817.4523929999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033196, intron 1 of 13)	intron (NM_001033196, intron 1 of 13)	-1204.0	NR_138563	68949.0	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30649478-4	chr5	30648979	30649979	+	817.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175675, intron 1 of 5)	intron (NM_175675, intron 1 of 5)	1540.0	NM_175675	74919.0	Mm.247985	NM_175675	ENSMUSG00000029175	Slc35f6	4930471M23Rik|5730478O19Rik|ANT2BP|P40|Tango9	solute carrier family 35, member F6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-5275506-4	chr5	5274997	5275997	+	817.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	-9429.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	14.0	13.0	4.0	10.5	11.5	10.0
Merged-chr1-74313548-4	chr1	74313072	74314072	+	817.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039509, intron 2 of 9)	intron (NM_001039509, intron 2 of 9)	-9236.0	NM_027154	69660.0	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111608911-4	chr9	111608397	111609397	+	817.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324546, intron 1 of 9)	intron (NM_001324546, intron 1 of 9)	81451.0	NM_016853	20840.0	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66323375-4	chr7	66322839	66323839	+	817.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 6 of 33)	intron (NM_146191, intron 6 of 33)	58385.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-36916583-3	chr9	36916080	36917080	+	817.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 7 of 12)	intron (NM_001029838, intron 7 of 12)	83006.0	NM_001357611	235180.0	Mm.5264	NM_183171	ENSMUSG00000032118	Fez1	UNC-76|UNC76	fasciculation and elongation protein zeta 1 (zygin I)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30602998-3	chr16	30602517	30603517	+	817.383362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177632)	TTS (NM_177632)	3294.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172324871-4	chr1	172324324	172325324	+	817.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360808, intron 3 of 3)	intron (NM_001360808, intron 3 of 3)	4498.0	NM_008429	16524.0	Mm.261168	NM_008429	ENSMUSG00000038026	Kcnj9	1700085N21Rik|Girk3|Kir3.3|mbGIRK3	potassium inwardly-rectifying channel, subfamily J, member 9	protein-coding	10.0	0.0	11.0	2.0	2.5	0.0
Merged-chr8-70863325-4	chr8	70862770	70863770	+	817.354187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6262.0	NM_032397	84036.0	Mm.32074	NM_032397	ENSMUSG00000002908	Kcnn1	AI854248|KCa2.1|SK1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	protein-coding	0.0	0.0	3.0	0.0	1.0	1.5
Merged-chr5-100569521-4	chr5	100569019	100570019	+	817.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139198, intron 1 of 4)	intron (NM_139198, intron 1 of 4)	2686.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116074065-3	chr6	116073575	116074575	+	817.349976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	-79070.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-61413410-4	chr3	61412878	61413878	+	817.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48871.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77465684-2	chr11	77465184	77466184	+	817.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_139130, exon 2 of 10)	exon (NM_139130, exon 2 of 10)	1771.0	NM_139130	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116078418-3	chr11	116077866	116078866	+	817.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001009573)	promoter-TSS (NM_001009573)	-405.0	NM_001009573	70450.0	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27541246-2	chr7	27540746	27541746	+	817.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_011116, exon 7 of 14)	exon (NM_011116, exon 7 of 14)	11972.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-35929966-3	chr3	35929444	35930444	+	817.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205361, intron 1 of 6)	intron (NM_001205361, intron 1 of 6)	130.0	NM_033623	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40238499-2	chr9	40237999	40238999	+	817.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30717.0	NM_001083917	235281.0	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-50066187-4	chr18	50065700	50066700	+	817.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134131, intron 1 of 1)	intron (NM_134131, intron 1 of 1)	-12538.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	8.5	15.0	17.5	2.5	7.5	14.5
Merged-chr11-53771494-6	chr11	53770976	53771976	+	817.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159393, intron 2 of 9)	intron (NM_001159393, intron 2 of 9)	1003.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92641368-4	chr1	92640881	92641881	+	817.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163425, intron 1 of 2)	intron (NM_001163425, intron 1 of 2)	567.0	NR_028108	66915.0	Mm.30179	NM_001163425	ENSMUSG00000073616	Cops9	1110002M09Rik|Myeov2	COP9 signalosome subunit 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-192091035-4	chr1	192090576	192091576	+	817.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011633, intron 1 of 9)	intron (NM_011633, intron 1 of 9)	1523.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47259708-3	chr19	47259133	47260133	+	817.305542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164717)	TTS (NM_001164717)	13956.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	1.0	0.0	0.0	1.0	0.0	1.5
Merged-chr11-69657223-2	chr11	69656723	69657723	+	817.2976070000001	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009235)	TTS (NM_009235)	2186.0	NM_009235	20670.0	Mm.347499	NM_009235	ENSMUSG00000041287	Sox15	-	SRY (sex determining region Y)-box 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-47053537-5	chr7	47053059	47054059	+	817.293335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026436, exon 3 of 3)	exon (NM_026436, exon 3 of 3)	2919.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8817033-4	chr3	8816566	8817566	+	817.270813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025434, intron 2 of 2)	L1_Mus3|LINE|L1	106791.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181459985-4	chr2	181459530	181460530	+	817.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028125)	promoter-TSS (NM_028125)	-604.0	NM_028125	72147.0	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150862858-4	chr4	150862371	150863371	+	817.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133753, intron 1 of 3)	intron (NM_133753, intron 1 of 3)	7801.0	NM_133753	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137837299-4	chr5	137836782	137837782	+	817.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1004.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28351967-4	chr7	28351510	28352510	+	817.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_028129)	TTS (NR_028129)	470.0	NR_028129	100302567.0		NR_028129		AF357399	MBI-142	snoRNA AF357399	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45911907-3	chr9	45911454	45912454	+	817.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104055, intron 5 of 17)	intron (NR_104055, intron 5 of 17)	-5043.0	NM_001361112	235315.0	Mm.220945	NM_178709	ENSMUSG00000042790	Rnf214	D130054N24Rik	ring finger protein 214	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86615257-2	chr11	86614757	86615757	+	817.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 7 of 11)	AT_rich|Low_complexity|Low_complexity	-31099.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150341392-2	chr4	150340899	150341899	+	817.25	f0_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 1 of 22)	MTA_Mm|LTR|ERVL-MaLR	59483.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	16.0	45.0	36.5	59.0	64.5	32.0
Merged-chr5-43801981-3	chr5	43801503	43802503	+	817.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie9|DNA|hAT-Charlie	-16890.0	NM_009763	12182.0	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	7.5	8.5	6.5	8.0	14.5	1.5
Merged-chr9-87144362-3	chr9	87143906	87144906	+	817.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177731)	promoter-TSS (NM_001177731)	100.0	NM_001101482	244958.0	Mm.335337	NM_001101482	ENSMUSG00000042761	Mrap2	BB633055	melanocortin 2 receptor accessory protein 2	protein-coding	3.0	0.0	1.0	4.0	13.0	1.0
Merged-chr9-119980935-3	chr9	119980379	119981379	+	817.200012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153287, intron 1 of 4)	intron (NM_153287, intron 1 of 4)	2144.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70751328-4	chr17	70750849	70751849	+	817.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	95428.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	37.5	139.0	90.5	47.5	58.5	46.5
Merged-chr14-63088500-2	chr14	63088000	63089000	+	817.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33427.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-186705983-3	chr1	186705455	186706455	+	817.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001329107)	promoter-TSS (NM_001329107)	34.0	NM_009367	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105267081-3	chr4	105266486	105267486	+	817.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	109639.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.0	0.0	0.0	2.0	0.5	0.0
Merged-chr13-101680399-3	chr13	101679930	101680930	+	817.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001077495)	TTS (NM_001077495)	12200.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124349896-4	chr8	124349349	124350349	+	817.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84087.0	NM_171824	209966.0	Mm.234233	NM_171824	ENSMUSG00000050751	Pgbd5	2900019M05Rik|AI854313	piggyBac transposable element derived 5	protein-coding	8.5	4.0	0.0	2.0	6.5	6.5
Merged-chr6-31321695-3	chr6	31321194	31322194	+	817.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040261, intron 3 of 4)	intron (NR_040261, intron 3 of 4)	77079.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33916859-2	chr16	33916359	33917359	+	817.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 9 of 14)	intron (NM_001145884, intron 9 of 14)	50179.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6458572-2	chr19	6458072	6459072	+	817.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205235, intron 6 of 21)	intron (NM_001205235, intron 6 of 21)	39834.0	NM_001205234	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87785367-2	chr3	87784867	87785867	+	817.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033124, intron 7 of 16)	intron (NM_001033124, intron 7 of 16)	9795.0	NM_001033124	18211.0	Mm.80682	NM_001033124	ENSMUSG00000028072	Ntrk1	C80751|Tkr|TrkA|trk	neurotrophic tyrosine kinase, receptor, type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127285846-2	chr10	127285346	127286346	+	817.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_033072, exon 6 of 13)	exon (NM_033072, exon 6 of 13)	3172.0	NM_001347171	110962.0	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr16-23489457-2	chr16	23488957	23489957	+	817.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359083, intron 5 of 10)	Lx8|LINE|L1	31358.0	NM_008555	17174.0	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-14572122-3	chr3	14571615	14572615	+	817.144409	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028915, intron 18 of 18)	intron (NM_028915, intron 18 of 18)	-6556.0	NM_007892	13559.0	Mm.153415	NM_007892	ENSMUSG00000027552	E2f5	AU024671|E2F-5	E2F transcription factor 5	protein-coding	1.5	3.0	4.5	0.0	2.0	1.5
Merged-chr1-138138011-3	chr1	138137517	138138517	+	817.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	37109.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-47150859-3	chr7	47150364	47151364	+	817.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17180.0	NM_013643	19259.0	Mm.4654	NM_013643	ENSMUSG00000030854	Ptpn5	Step	protein tyrosine phosphatase, non-receptor type 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-41212816-4	chr9	41212288	41213288	+	817.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040392, intron 2 of 4)	intron (NR_040392, intron 2 of 4)	6633.0	NR_040392	78500.0	Mm.275715	NR_040392	ENSMUSG00000100837	1700063D05Rik	-	RIKEN cDNA 1700063D05 gene	ncRNA	7.5	26.5	8.0	3.5	15.5	6.5
Merged-chr13-34303611-4	chr13	34303106	34304106	+	817.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 2 of 10)	intron (NM_001033167, intron 2 of 10)	41576.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12656012-4	chr17	12655513	12656513	+	817.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009202, intron 8 of 10)	ORR1E|LTR|ERVL-MaLR	19825.0	NM_009202	20517.0	Mm.594	NM_009202	ENSMUSG00000023829	Slc22a1	Lx1|Oct1|Orct|Orct1	solute carrier family 22 (organic cation transporter), member 1	protein-coding	0.0	0.5	2.5	0.0	0.0	1.0
Merged-chr7-68113374-4	chr7	68112874	68113874	+	817.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 2 of 20)	AT_rich|Low_complexity|Low_complexity	150859.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	4.0	2.5	6.5	3.0	2.5	7.5
Merged-chr11-102456056-6	chr11	102455569	102456569	+	817.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010575, intron 27 of 29)	CpG-2677	-8406.0	NM_199200	217219.0	Mm.259924	NM_199200	ENSMUSG00000034685	Fam171a2	-	family with sequence similarity 171, member A2	protein-coding	0.0	0.0	0.5	0.0	1.5	0.0
Merged-chr14-114083656-2	chr14	114083156	114084156	+	817.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-748309.0	NR_045661	75822.0	Mm.410813	NR_045661	ENSMUSG00000115320	4930524C18Rik	-	RIKEN cDNA 4930524C18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-94515507-2	chr4	94515007	94516007	+	817.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026368, intron 5 of 5)	intron (NM_026368, intron 5 of 5)	41289.0	NM_026368	67770.0	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	1.0	8.5	1.0	0.0	4.0	1.5
Merged-chr13-49147604-3	chr13	49147091	49148091	+	817.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290313, intron 1 of 29)	CpG-3837	737.0	NM_029361	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38575669-2	chr18	38575169	38576169	+	817.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	25599.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86039061-2	chr15	86038561	86039561	+	817.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5284.0	NM_009886	12614.0	Mm.22680	NM_009886	ENSMUSG00000016028	Celsr1	Adgrc1|Crsh|Scy|crash	cadherin, EGF LAG seven-pass G-type receptor 1	protein-coding	0.0	1.0	2.0	0.0	0.0	0.0
Merged-chr3-94488126-2	chr3	94487626	94488626	+	817.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289620, intron 10 of 12)	intron (NM_001289620, intron 10 of 12)	3768.0	NR_151857	78784.0	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|ETR-1|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11606136-1	chr19	11605636	11606636	+	817.0	f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-1332.0	NM_026835	68774.0	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	8.5	12.0	15.0	2.0	11.5	4.0
Merged-chr1-180303275-2	chr1	180302775	180303775	+	817.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27201.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149820216-2	chr4	149819716	149820716	+	817.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-45949.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41635866-2	chr13	41635366	41636366	+	817.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163572, exon 3 of 3)	3' UTR (NM_001163572, exon 3 of 3)	29650.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113874044-2	chr13	113873544	113874544	+	817.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	79536.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86980017-1	chr17	86979517	86980517	+	817.0	f1_c57bl6.idr	intron (NM_145491, intron 2 of 4)	MTC|LTR|ERVL-MaLR	16906.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	0.5	4.0	4.5	1.0	3.0	0.0
Merged-chr18-62187796-2	chr18	62187296	62188296	+	817.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7696.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94753540-2	chr11	94753040	94754040	+	817.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7642.0	NM_001105561	217122.0	Mm.24063	NM_183153		Gm11545	A430060F13Rik|C86086	predicted gene 11545	protein-coding	7.5	4.0	7.5	5.5	1.5	5.5
Merged-chr2-76049831-3	chr2	76049349	76050349	+	817.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081033, intron 14 of 19)	intron (NM_001081033, intron 14 of 19)	-67882.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-186704509-3	chr1	186704019	186705019	+	817.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001329107, exon 1 of 8)	exon (NM_001329107, exon 1 of 8)	1470.0	NM_009367	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79982200-2	chr11	79981700	79982700	+	817.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-10906.0	NM_001163018	52615.0	Mm.283410	NM_199196	ENSMUSG00000017548	Suz12	2610028O16Rik|AI195385|AU016842|AW536442|D11Ertd530e|mKIAA0160	SUZ12 polycomb repressive complex 2 subunit	protein-coding	0.0	1.5	4.0	2.0	0.0	2.0
Merged-chr17-71268779-2	chr17	71268281	71269281	+	817.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357338, intron 4 of 7)	intron (NM_001357338, intron 4 of 7)	42230.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	0.0	4.0	2.0	2.5	1.0	1.5
Merged-chr5-135729506-2	chr5	135729006	135730006	+	817.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008898, exon 4 of 16)	exon (NM_008898, exon 4 of 16)	6383.0	NR_106001	102466791.0		NR_106001	ENSMUSG00000099197	Mir7034	Gm27372|mmu-mir-7034	microRNA 7034	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-13005911-2	chr17	13005411	13006411	+	817.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A0-int|LTR|ERVL-MaLR	-1928.0	NM_013671	20656.0	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59381241-3	chr4	59380752	59381752	+	817.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 6 of 16)	intron (NM_001163288, intron 6 of 16)	57381.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0.5	0.0	1.5	0.0	0.0	2.0
Merged-chr9-56258583-4	chr9	56258053	56259053	+	817.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172924, exon 4 of 7)	exon (NM_172924, exon 4 of 7)	-97483.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147922979-4	chr4	147922477	147923477	+	817.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011122, intron 10 of 18)	intron (NM_011122, intron 10 of 18)	13799.0	NM_011122	18822.0	Mm.23951	NM_011122	ENSMUSG00000019055	Plod1	2410042F05Rik|AI854890|AV007929|Lh1|Plod	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-73012125-2	chr10	73011625	73012625	+	817.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040646, intron 2 of 4)	intron (NR_040646, intron 2 of 4)	74580.0	NR_040646	327768.0	Mm.417745	NR_040646	ENSMUSG00000111994	A330049N07Rik	-	RIKEN cDNA A330049N07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38210565-2	chr18	38210065	38211065	+	817.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029357)	promoter-TSS (NM_029357)	-803.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105006966-2	chr5	105006467	105007467	+	817.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24250.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20672842-2	chr14	20672342	20673342	+	817.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1479.0	NM_172596	218811.0	Mm.173119	NM_172596	ENSMUSG00000039367	Sec24c	2610204K03Rik|mKIAA0079	Sec24 related gene family, member C (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100506159-2	chr7	100505659	100506659	+	817.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153527, exon 5 of 8)	exon (NM_153527, exon 5 of 8)	8656.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5774130-2	chr2	5773630	5774630	+	817.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59368.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167910227-2	chr2	167909727	167910727	+	817.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22100.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60713705-2	chr18	60713205	60714205	+	817.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	13861.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	1.5	6.0	1.5	1.5	6.0	1.5
Merged-chr14-102921179-2	chr14	102920679	102921679	+	817.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	61453.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34583045-2	chr19	34582545	34583545	+	817.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010501)	promoter-TSS (NM_010501)	-484.0	NM_010501	15959.0	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92860947-2	chr16	92860447	92861447	+	817.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-34873.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92491931-2	chr5	92491421	92492421	+	817.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	13736.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	7.0	4.0	11.0	4.5	21.0	6.0
Merged-chr4-155869043-2	chr4	155868541	155869541	+	817.0	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028020)	promoter-TSS (NM_028020)	399.0	NM_024472	79554.0	Mm.25556	NM_024472	ENSMUSG00000029073	Cptp	Gltpd1	ceramide-1-phosphate transfer protein	protein-coding	1.0	26.5	20.5	1.5	9.5	26.5
Merged-chr15-64047804-4	chr15	64047301	64048301	+	816.979126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	MTEa|LTR|ERVL-MaLR	11963.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25986431-4	chr15	25985875	25986875	+	816.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144523, intron 1 of 5)	MLT1A1|LTR|ERVL-MaLR	2009.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78197366-3	chr17	78196877	78197877	+	816.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2871.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108915610-3	chr8	108915047	108916047	+	816.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 5 of 9)	intron (NM_007496, intron 5 of 9)	-21313.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129403098-3	chr2	129402590	129403590	+	816.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31951.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	7.5	9.0	2.5	12.0	28.5	20.0
Merged-chr7-31041162-2	chr7	31040662	31041662	+	816.916626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106017)	promoter-TSS (NR_106017)	677.0	NM_001111073	18301.0	Mm.1870	NM_008761	ENSMUSG00000009687	Fxyd5	EF-8|Oit2|RIC	FXYD domain-containing ion transport regulator 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147915305-2	chr5	147914805	147915805	+	816.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20490.0	NM_027872	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54476087-4	chr14	54475588	54476588	+	816.895813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080726)	promoter-TSS (NM_080726)	-12.0	NM_080726	140743.0	Mm.274727	NM_080726	ENSMUSG00000022176	Rem2	AW411893	rad and gem related GTP binding protein 2	protein-coding	1.5	5.0	5.5	13.0	12.0	7.5
Merged-chr2-117194988-3	chr2	117194511	117195511	+	816.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9884.0	NR_030440	732489.0		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59480823-3	chr15	59480333	59481333	+	816.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	106635.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	0.0	5.0	6.5	3.0	7.0	7.0
Merged-chr8-121930201-4	chr8	121929711	121930711	+	816.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007608, intron 2 of 6)	RLTR20C2_MM|LTR|ERVK	14701.0	NM_007608	12352.0	Mm.116761	NM_007608	ENSMUSG00000025317	Car5a	CAV|Ca5a|Car5	carbonic anhydrase 5a, mitochondrial	protein-coding	0.0	2.0	2.5	1.5	0.0	0.0
Merged-chr5-85937039-4	chr5	85936464	85937464	+	816.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	128619.0	NM_001345902	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	5.5	0.5	0.5	3.0	2.5	0.0
Merged-chr11-19972604-4	chr11	19972120	19973120	+	816.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	48178.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97573230-3	chr15	97572728	97573728	+	816.8444820000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	132594.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-105818721-2	chr7	105818221	105819221	+	816.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7634.0	NM_025301	27397.0	Mm.44225	NM_025301	ENSMUSG00000030879	Mrpl17	MRP-L26|Rpml26	mitochondrial ribosomal protein L17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79686207-2	chr15	79685707	79686707	+	816.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028792, intron 1 of 3)	intron (NM_028792, intron 1 of 3)	1665.0	NM_028792	74158.0	Mm.323393	NM_028792	ENSMUSG00000022426	Josd1	1300006C06Rik|mKIAA0063	Josephin domain containing 1	protein-coding	5.0	2.0	2.0	3.0	3.0	0.0
Merged-chr17-72858403-4	chr17	72857904	72858904	+	816.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20356.0	NM_001357371	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	0.0	3.0	3.0	3.0	0.0	0.0
Merged-chr2-128948374-4	chr2	128947882	128948882	+	816.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-4362.0	NM_020594	57432.0	Mm.11675	NM_020594	ENSMUSG00000027387	Zc3h8	AU020882|E130108N08Rik|Fliz1|Zc3hdc8	zinc finger CCCH type containing 8	protein-coding	0.0	3.0	1.0	0.0	0.0	0.0
Merged-chr1-91380674-4	chr1	91380180	91381180	+	816.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023343, intron 9 of 11)	intron (NM_023343, intron 9 of 11)	14250.0	NM_173395	227358.0	Mm.389157	NM_173395	ENSMUSG00000047443	Erfe	4832406C22|Fam132b|myonectin	erythroferrone	protein-coding	0.0	0.0	0.0	1.0	1.0	0.0
Merged-chr9-107268202-4	chr9	107267708	107268708	+	816.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316691, intron 1 of 7)	intron (NM_001316691, intron 1 of 7)	21188.0	NM_001316691	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	13.0	2.5	17.0	0.5	17.5	3.5
Merged-chr8-117457482-2	chr8	117456982	117457982	+	816.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 20 of 20)	intron (NM_028941, intron 20 of 20)	-1783.0	NR_106046	102465653.0		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-66073096-4	chr18	66072509	66073509	+	816.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178793, intron 6 of 10)	intron (NM_178793, intron 6 of 10)	-70374.0	NM_001172062	70361.0	Mm.290857	NM_027400	ENSMUSG00000041891	Lman1	2610020P13Rik|AI326273|AU043785|C730041J05|ERGIC53|F5F8D|MCFD1|MR60|P58|gp58	lectin, mannose-binding, 1	protein-coding	5.5	30.5	13.0	5.5	30.5	13.0
Merged-chr11-21448183-3	chr11	21447676	21448676	+	816.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	63004.0	NR_028259	237694.0	Mm.72926	NM_172792	ENSMUSG00000078962	4932414J04Rik	-	RIKEN cDNA 4932414J04 gene	ncRNA	7.0	35.5	6.5	18.5	15.5	0.0
Merged-chr7-19800950-3	chr7	19800464	19801464	+	816.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4155.0	NM_023224	80794.0	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-18687747-3	chr19	18687226	18688226	+	816.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026120, intron 3 of 7)	RSINE1|SINE|B4	16946.0	NM_026120	67383.0	Mm.306602	NM_026120	ENSMUSG00000024726	Carnmt1	2410127L17Rik	carnosine N-methyltransferase 1	protein-coding	1.0	1.0	0.0	2.0	0.0	0.0
Merged-chr7-75781095-2	chr7	75780595	75781595	+	816.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19|LTR|ERVK	-67243.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38388465-4	chr15	38387960	38388960	+	816.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A1|LTR|ERVK	-87749.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-86224750-4	chr3	86224212	86225212	+	816.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030695)	promoter-TSS (NM_030695)	22.0	NM_001077688	80877.0	Mm.439825	NM_030695	ENSMUSG00000028080	Lrba	C80285|D3Ertd775e|Lab300|Lba	LPS-responsive beige-like anchor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5062711-2	chr11	5062184	5063184	+	816.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001190406, exon 3 of 5)	exon (NM_001190406, exon 3 of 5)	2643.0	NM_144560	78926.0	Mm.44591	NM_030228	ENSMUSG00000034201	Gas2l1	4930500E24Rik|D0Jmb1|Gar22|TU-71.1	growth arrest-specific 2 like 1	protein-coding	2.5	0.0	0.5	0.0	0.0	0.5
Merged-chr18-4346456-4	chr18	4345971	4346971	+	816.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 2 of 7)	intron (NM_007746, intron 2 of 7)	6482.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-54492636-3	chr1	54492174	54493174	+	816.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163314, intron 22 of 26)	intron (NM_001163314, intron 22 of 26)	-53648.0	NM_001033194	98488.0	Mm.25856	NM_001033194	ENSMUSG00000041303	Gtf3c3	TF3C-gamma|TFIIIC102	general transcription factor IIIC, polypeptide 3	protein-coding	0.0	0.0	0.5	0.0	0.0	2.5
Merged-chr16-85800828-3	chr16	85800333	85801333	+	816.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009621, intron 1 of 8)	intron (NM_009621, intron 1 of 8)	2280.0	NM_009621	11504.0	Mm.1421	NM_009621	ENSMUSG00000022893	Adamts1	ADAM-TS1|ADAMTS|ADAMTS-1|C3-C5|METH-1|METH1	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20248498-4	chr11	20248028	20249028	+	816.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172260, intron 1 of 6)	intron (NM_172260, intron 1 of 6)	896.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	2.5	0.5	3.0	0.0	1.0	3.0
Merged-chr1-184825335-4	chr1	184824831	184825831	+	816.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133684, intron 4 of 7)	intron (NM_133684, intron 4 of 7)	-2843.0	NR_035502	100316821.0		NR_035502	ENSMUSG00000088559	Mir1981	mir-1981|mmu-mir-1981	microRNA 1981	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136130360-2	chr1	136129860	136130860	+	816.700012	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_046167, exon 2 of 4)	non-coding (NR_046167, exon 2 of 4)	823.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4297099-3	chr11	4296567	4297567	+	816.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30271.0	NM_001039537	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118263983-4	chr2	118263487	118264487	+	816.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7021.0	NM_027759	71313.0	Mm.85046	NM_027759	ENSMUSG00000027344	Fsip1	1700012M13Rik|4933432K11Rik	fibrous sheath-interacting protein 1	protein-coding	12.5	21.0	12.5	6.0	24.0	16.5
Merged-chr5-8055855-4	chr5	8055349	8056349	+	816.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080974)	promoter-TSS (NM_001080974)	-693.0	NM_001080974	109552.0	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43043312-3	chr4	43042778	43043778	+	816.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045567, intron 1 of 7)	B1_Mus2|SINE|Alu	2942.0	NR_045567	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	10.5	27.0	17.5	16.5	56.0	41.5
Merged-chr1-94053633-1	chr1	94053133	94054133	+	816.666687	f0_balb.idr	Intergenic	Tigger8|DNA|TcMar-Tigger	-1080.0	NM_008798	18566.0	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101938345-4	chr5	101937848	101938848	+	816.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 13 of 66)	B3|SINE|B2	131573.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37777585-4	chr13	37777087	37778087	+	816.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48451.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-31981051-1	chr8	31980551	31981551	+	816.666687	f0_balb.idr	Intergenic	Intergenic	-62848.0	NM_178591	211323.0	Mm.153432	NM_178591	ENSMUSG00000062991	Nrg1	6030402G23Rik|ARIA|D230005F13Rik|GGF|GGFII|HRG|HRGalpha|Hgl|NDF|SMDF	neuregulin 1	protein-coding	0.0	8.5	1.0	0.0	8.5	2.0
Merged-chr7-92742238-3	chr7	92741804	92742804	+	816.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015510)	promoter-TSS (NR_015510)	590.0	NM_029494	75985.0	Mm.323004	NM_029494	ENSMUSG00000030643	Rab30	5033421K01Rik|AI323892|Rsb30	RAB30, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90685205-1	chr5	90684705	90685705	+	816.666687	f0_balb.idr	Intergenic	Intergenic	-44678.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	2.0	2.0	2.0	6.0	3.0	0.5
Merged-chr4-156234027-2	chr4	156233527	156234527	+	816.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_198305, exon 2 of 12)	exon (NM_198305, exon 2 of 12)	830.0	NM_198305	231003.0	Mm.423038	NM_198305	ENSMUSG00000078485	Klhl17	AL022703|BC058738	kelch-like 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-68012865-4	chr5	68012368	68013368	+	816.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18967.0	NM_001018019	433899.0	Mm.332422	NM_001018019	ENSMUSG00000068082	Grxcr1	Tg(Eno2-Gabrb3)0370Brll|pi|tde	glutaredoxin, cysteine rich 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-74876713-4	chr18	74876213	74877213	+	816.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84550.0	NM_010720	16891.0	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding	0.0	13.0	2.0	0.0	5.0	0.0
Merged-chr7-131555457-2	chr7	131554957	131555957	+	816.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_145998, exon 2 of 2)	exon (NM_145998, exon 2 of 2)	1395.0	NM_145998	15372.0	Mm.303357	NM_145998	ENSMUSG00000050100	Hmx2	Nkx-5.2|Nkx5-2	H6 homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-43602829-2	chr16	43602329	43603329	+	816.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 5 of 6)	intron (NM_181058, intron 5 of 6)	-37826.0	NR_030576	100124467.0		NR_030576	ENSMUSG00000076372	Mir568	Mirn568|mmu-mir-568	microRNA 568	ncRNA	4.5	0.5	1.5	1.0	0.0	2.0
Merged-chr2-61807271-2	chr2	61806771	61807771	+	816.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009322, intron 3 of 5)	intron (NM_009322, intron 3 of 5)	2818.0	NM_009322	21375.0	Mm.308525	NM_009322	ENSMUSG00000035033	Tbr1	-	T-box brain gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-45944391-2	chr11	45943920	45944920	+	816.666626	f0_balb.idr|f0_c57.idr	TTS (NM_001290737)	TTS (NM_001290737)	515.0	NM_028185	72290.0	Mm.249827	NM_028185	ENSMUSG00000044847	Lsm11	2210404M20Rik|AV079530	U7 snRNP-specific Sm-like protein LSM11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-62853435-4	chr5	62852950	62853950	+	816.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 7 of 8)	intron (NM_001170705, intron 7 of 8)	39627.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	57.0	66.0	36.5	66.5	96.0	88.0
Merged-chr5-99284529-4	chr5	99284035	99285035	+	816.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31608.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58677824-5	chr1	58677356	58678356	+	816.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347056, intron 5 of 13)	intron (NM_001347056, intron 5 of 13)	14589.0	NM_001347056	108812.0	Mm.442063	NM_175370	ENSMUSG00000047528	Als2cr12	4933405P16Rik|4933425F06Rik	amyotrophic lateral sclerosis 2 chromosome region 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122824674-4	chr6	122824192	122825192	+	816.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021899, intron 1 of 10)	intron (NM_021899, intron 1 of 10)	4508.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54544984-4	chr18	54544475	54545475	+	816.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66769.0	NR_045400	328957.0	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50149966-4	chr17	50149524	50150524	+	816.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	40473.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37374957-3	chr19	37374452	37375452	+	816.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1451.0	NM_010615	16551.0	Mm.42203	NM_010615	ENSMUSG00000012443	Kif11	Eg5|Kif8|Kifl1|Knsl1	kinesin family member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95488193-3	chr8	95487697	95488697	+	816.579346	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009974, intron 1 of 11)	intron (NM_009974, intron 1 of 11)	623.0	NM_009974	13000.0	Mm.51136	NM_009974	ENSMUSG00000046707	Csnk2a2	1110035J23Rik|C77789|CK2	casein kinase 2, alpha prime polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165926518-3	chr2	165925982	165926982	+	816.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-41644.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	1.0	3.0	5.5	15.5	17.5	17.0
Merged-chr7-4705313-3	chr7	4704804	4705804	+	816.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001168572, exon 10 of 10)	3' UTR (NM_001168572, exon 10 of 10)	14376.0	NM_001168572	381979.0	Mm.297064	NM_001003920	ENSMUSG00000035390	Brsk1	Gm1100|SAD-B|SADB	BR serine/threonine kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118743615-3	chr2	118743173	118744173	+	816.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Plat_L3|LINE|CR1	-2085.0	NM_001301269	100043272.0	Mm.398072	NM_001301269	ENSMUSG00000074918	Inafm2	5430417L22Rik	InaF motif containing 2	protein-coding	0.5	1.0	8.0	0.5	0.0	0.5
Merged-chr2-109932358-3	chr2	109931844	109932844	+	816.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172671, intron 1 of 17)	intron (NM_172671, intron 1 of 17)	14697.0	NM_172671	107515.0	Mm.277351	NM_172671	ENSMUSG00000050199	Lgr4	9130225G07|A330106J01Rik|A930009A08Rik|Gpr48	leucine-rich repeat-containing G protein-coupled receptor 4	protein-coding	0.0	3.5	1.0	0.0	2.5	0.0
Merged-chr11-94587547-3	chr11	94587024	94588024	+	816.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153807, intron 1 of 15)	ID_B1|SINE|B4	14262.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	13.0	16.0	6.5	12.0	13.5	15.0
Merged-chr2-131510071-4	chr2	131509579	131510579	+	816.520813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177840, intron 1 of 3)	intron (NM_001177840, intron 1 of 3)	18217.0	NM_001177838	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-41763824-2	chr5	41763324	41764324	+	816.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_007524, exon 1 of 2)	exon (NM_007524, exon 1 of 2)	396.0	NM_007524	12020.0	Mm.2530	NM_007524	ENSMUSG00000049691	Nkx3-2	Bapx1|NKX3.2|Nkx-3.2	NK3 homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141328822-2	chr7	141328322	141329322	+	816.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027797, intron 1 of 5)	intron (NM_027797, intron 1 of 5)	692.0	NM_027797	71448.0	Mm.248960	NM_027797	ENSMUSG00000025505	Tmem80	5530601I19Rik	transmembrane protein 80	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-153914060-2	chr3	153913560	153914560	+	816.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1094.0	NR_028094	19352.0	Mm.277831	NM_011231	ENSMUSG00000038975	Rabggtb	-	Rab geranylgeranyl transferase, b subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19821991-3	chr7	19821453	19822453	+	816.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033601, intron 1 of 8)	intron (NM_033601, intron 1 of 8)	802.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-13963831-2	chr14	13963331	13964331	+	816.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1979.0	NM_001359901	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	8.0	3.0	21.0	5.5	19.5	13.5
Merged-chr1-24092650-2	chr1	24092150	24093150	+	816.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026604, intron 1 of 20)	Charlie5|DNA|hAT-Charlie	7691.0	NM_026604	68187.0	Mm.87130	NM_026604	ENSMUSG00000026153	Fam135a	4921533L14Rik|AI256732|AI835491	family with sequence similarity 135, member A	protein-coding	2.5	0.0	0.0	6.5	5.5	2.5
Merged-chr17-13858466-2	chr17	13857966	13858966	+	816.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151731, intron 20 of 33)	Lx|LINE|L1	-89907.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128844357-2	chr4	128843857	128844857	+	816.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-38245.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99179387-2	chr9	99178887	99179887	+	816.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-39176.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163619315-2	chr2	163618815	163619815	+	816.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_181734)	TTS (NM_181734)	12103.0	NM_001305803	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83668751-2	chr7	83668251	83669251	+	816.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 9 of 18)	intron (NM_001360088, intron 9 of 18)	-13256.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88407933-2	chr3	88407433	88408433	+	816.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025928, intron 1 of 4)	RSINE1|SINE|B4	2464.0	NM_001310605	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32856880-3	chr18	32856374	32857374	+	816.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110015, intron 16 of 22)	intron (NM_001110015, intron 16 of 22)	-19587.0	NR_045381	75795.0	Mm.382634	NR_045381	ENSMUSG00000097553	4930455D15Rik	-	RIKEN cDNA 4930455D15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73244310-2	chr14	73243810	73244810	+	816.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 17 of 26)	Tigger5|DNA|TcMar-Tigger	6419.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152100306-2	chr3	152099806	152100806	+	816.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016867, intron 5 of 5)	intron (NM_016867, intron 5 of 5)	65594.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97998114-2	chr11	97997614	97998614	+	816.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1941.0	NR_152188	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44362859-2	chr7	44362359	44363359	+	816.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027049, intron 3 of 5)	G-rich|Low_complexity|Low_complexity	12171.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98804313-4	chr15	98803850	98804850	+	816.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001013741, exon 2 of 2)	3' UTR (NM_001013741, exon 2 of 2)	3575.0	NM_001013741	13199.0	Mm.390810	NM_001013741	ENSMUSG00000059213	Ddn	Gm748	dendrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80667951-2	chr12	80667451	80668451	+	816.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026244, intron 3 of 6)	RLTR14|LTR|ERV1	23736.0	NM_026244	328133.0	Mm.238279	NM_026244	ENSMUSG00000048833	Slc39a9	2010002A02Rik|2610511I23Rik|4833420E20Rik|AW209151	solute carrier family 39 (zinc transporter), member 9	protein-coding	3.0	0.0	0.5	0.0	6.0	1.5
Merged-chr4-43429019-2	chr4	43428519	43429519	+	816.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162381, intron 1 of 4)	intron (NM_001162381, intron 1 of 4)	115.0	NM_177377	329831.0	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85963155-2	chr12	85962655	85963655	+	816.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	115886.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96712588-2	chr15	96712088	96713088	+	816.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-12860.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-6151439-2	chr7	6150939	6151939	+	816.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013012, intron 1 of 2)	intron (NM_001013012, intron 1 of 2)	4532.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101566848-4	chr7	101566354	101567354	+	816.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14-int|LTR|ERV1	-5989.0	NR_033804	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	0.0	4.0	12.0	6.0	5.5	2.5
Merged-chr6-33852807-2	chr6	33852307	33853307	+	816.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 13 of 17)	L1MD|LINE|L1	-176641.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17904827-2	chr17	17904327	17905327	+	816.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17003.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	3.0	0.0	0.0	2.0	0.0	0.0
Merged-chr5-139449964-2	chr5	139449464	139450464	+	816.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	10570.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45134021-2	chr7	45133521	45134521	+	816.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013520, exon 6 of 9)	exon (NM_013520, exon 6 of 9)	2411.0	NM_013520	14256.0	Mm.1658	NM_013520	ENSMUSG00000110206	Flt3l	Flt3lg|Ly72L	FMS-like tyrosine kinase 3 ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36801103-2	chr18	36800603	36801603	+	816.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027885)	promoter-TSS (NR_027885)	-660.0	NR_027885	378472.0	Mm.482379	NR_027885		Vaultrc5	Gm22653|Mvg1	vault RNA component 5	ncRNA	8.0	37.5	17.5	14.0	28.5	27.5
Merged-chr14-51220222-1	chr14	51219722	51220722	+	816.5	f0_balb.idr	Intergenic	Intergenic	16527.0	NM_017389	503847.0	Mm.377124	NM_017389	ENSMUSG00000050766	Ear14	-	eosinophil-associated, ribonuclease A family, member 14	protein-coding	1.0	3.0	1.0	2.5	4.0	1.0
Merged-chr5-125340049-6	chr5	125339433	125340433	+	816.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	1161.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	85.0	175.5	114.5	89.0	151.5	118.0
Merged-chr15-27788292-2	chr15	27787792	27788792	+	816.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 34 of 56)	intron (NM_001081302, intron 34 of 56)	-106750.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165880793-2	chr2	165880292	165881292	+	816.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252587, intron 1 of 11)	intron (NM_001252587, intron 1 of 11)	1486.0	NM_001281926	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	20.5	50.5	30.5	8.5	73.0	51.5
Merged-chr11-75548545-2	chr11	75548044	75549044	+	816.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 5 of 13)	intron (NM_001199284, intron 5 of 13)	-2885.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	5.0	9.0	12.0	0.0	4.0	2.0
Merged-chr5-32721602-2	chr5	32721107	32722107	+	816.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	24735.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0.0	1.0	3.0	0.0	2.0	0.0
Merged-chr17-86142495-3	chr17	86141983	86142983	+	816.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030133, intron 1 of 20)	intron (NM_030133, intron 1 of 20)	2692.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-16863132-5	chr6	16862652	16863652	+	816.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 2 of 6)	MTE2a|LTR|ERVL-MaLR	35289.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-16568795-3	chr12	16568407	16569407	+	816.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130412, intron 6 of 20)	intron (NM_001130412, intron 6 of 20)	20863.0	NM_015763	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	0.5	8.5	4.5	3.0	32.5	5.0
Merged-chr10-42144963-3	chr10	42144443	42145443	+	816.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126561.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-59012776-6	chr12	59012319	59013319	+	816.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009147)	promoter-TSS (NM_009147)	-572.0	NM_025656	66603.0	Mm.35353	NM_025656	ENSMUSG00000060121	Gemin2	Sip1|gemin-2	gem nuclear organelle associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135438089-3	chr4	135437579	135438579	+	816.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CTG)n|Simple_repeat|Simple_repeat	-4274.0	NM_022980	53902.0	Mm.331970	NM_022980	ENSMUSG00000059713	Rcan3	AU041093|Csp3|Dscr1l2	regulator of calcineurin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40662172-4	chr19	40661725	40662725	+	816.428589	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	2455.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	9.5	46.5	32.0	9.5	46.5	30.5
Merged-chr14-13912476-4	chr14	13912035	13913035	+	816.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	48778.0	NM_001285780	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	5.0	15.5	0.0	5.5	11.0	5.5
Merged-chr2-73206169-3	chr2	73205671	73206671	+	816.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030091, intron 2 of 7)	intron (NM_030091, intron 2 of 7)	8276.0	NM_030091	67059.0	Mm.22661	NM_025942	ENSMUSG00000027108	Ola1	2510025G09Rik|2810405J23Rik|2810409H07Rik|Gtpbp9|PTD004	Obg-like ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-20860716-4	chr5	20860196	20861196	+	816.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172992, intron 1 of 17)	intron (NM_172992, intron 1 of 17)	21428.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111743753-5	chr8	111743233	111744233	+	816.349976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009954, exon 1 of 7)	5' UTR (NM_009954, exon 1 of 7)	116.0	NM_009954	12927.0	Mm.3758	NM_009954	ENSMUSG00000031955	Bcar1	AI385681|Cas|Crkas	breast cancer anti-estrogen resistance 1	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr9-110352501-4	chr9	110351993	110352993	+	816.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001144, intron 1 of 22)	intron (NM_001001144, intron 1 of 22)	19137.0	NM_001001144	235623.0	Mm.288741	NM_001001144	ENSMUSG00000032485	Scap	9530044G19|mKIAA0199	SREBF chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7264996-2	chr19	7264496	7265496	+	816.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2398.0	NM_054048	104383.0	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-4675161-3	chr10	4674662	4675662	+	816.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126357, intron 2 of 7)	intron (NR_126357, intron 2 of 7)	-34996.0	NM_001302531	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117300570-3	chr10	117300064	117301064	+	816.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-7696.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50593719-3	chr9	50593204	50594204	+	816.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	10145.0	NM_025848	66925.0	Mm.10406	NM_025848	ENSMUSG00000000171	Sdhd	3110001M13Rik|AVLL5809|C78570|PRO19626	succinate dehydrogenase complex, subunit D, integral membrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114456708-3	chr6	114456231	114457231	+	816.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252643, intron 2 of 2)	intron (NM_001252643, intron 2 of 2)	-1791.0	NM_001317124	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57309963-1	chr16	57309463	57310463	+	816.333313	f0_c57.idr	intron (NM_025599, intron 6 of 9)	intron (NM_025599, intron 6 of 9)	-17112.0	NM_027651	71027.0	Mm.158563	NM_027651	ENSMUSG00000022753	Tmem30c	4933401B01Rik|4933409A18Rik|Cdc50c	transmembrane protein 30C	protein-coding	7.5	22.5	32.0	2.5	3.0	10.0
Merged-chr2-146872908-1	chr2	146872408	146873408	+	816.333313	f0_balb.idr	intron (NM_001033298, intron 4 of 13)	intron (NM_001033298, intron 4 of 13)	17019.0	NM_001033298	228730.0	Mm.292352	NM_001033298	ENSMUSG00000074749	Kiz	Gm114|Ncrna00153|Plk1s1	kizuna centrosomal protein	protein-coding	5.5	17.0	0.0	8.5	13.0	11.5
Merged-chr11-120237954-2	chr11	120237454	120238454	+	816.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_198423, intron 2 of 27)	CpG-2934	5007.0	NM_198423	268515.0	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6370301-1	chr4	6369801	6370801	+	816.333313	f1_balb.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	4621.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	15.0	69.0	37.5	17.0	68.5	45.0
Merged-chr16-4905244-3	chr16	4904719	4905719	+	816.299988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 1 of 17)	intron (NM_001357062, intron 1 of 17)	19119.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31245815-3	chr2	31245314	31246314	+	816.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019681)	promoter-TSS (NM_019681)	-109.0	NM_019681	14299.0	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108631280-3	chr8	108630771	108631771	+	816.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	-46594.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-117553581-4	chr6	117553064	117554064	+	816.270874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58329.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5592727-4	chr18	5592230	5593230	+	816.270874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033552)	promoter-TSS (NR_033552)	83.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79865803-3	chr10	79865489	79866489	+	816.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_181681, exon 7 of 7)	exon (NM_181681, exon 7 of 7)	3402.0	NR_105875	102465549.0		NR_105875	ENSMUSG00000098562	Mir6910	Gm27763|mmu-mir-6910	microRNA 6910	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-28623188-4	chr6	28622703	28623703	+	816.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 10 of 23)	intron (NM_019776, intron 10 of 23)	142855.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132389800-2	chr1	132389300	132390300	+	816.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_178874, intron 1 of 4)	intron (NM_178874, intron 1 of 4)	518.0	NM_001311107	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	5.0	14.0	8.0	3.0	10.0	2.5
Merged-chr11-54603455-2	chr11	54602955	54603955	+	816.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252497, intron 1 of 11)	Lx2|LINE|L1	7309.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32165053-4	chr17	32164566	32165566	+	816.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008716, intron 1 of 32)	intron (NM_008716, intron 1 of 32)	1786.0	NM_008716	18131.0	Mm.439741	NM_008716	ENSMUSG00000038146	Notch3	AW229011|N3|hpbk	notch 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96143848-4	chr9	96143335	96144335	+	816.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177352, intron 5 of 16)	intron (NM_177352, intron 5 of 16)	24406.0	NM_177352	235533.0	Mm.213651	NM_177352	ENSMUSG00000041440	Gk5	AV095337|C330018K18Rik|G630067D24Rik	glycerol kinase 5 (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14824002-2	chr8	14823502	14824502	+	816.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 11 of 15)	intron (NM_172910, intron 11 of 15)	-64534.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	3.0	2.5	8.5	3.0	2.5	7.0
Merged-chr18-68218554-2	chr18	68218054	68219054	+	816.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	Lx8|LINE|L1	-9392.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.0	5.5	3.0	12.0	0.0	4.0
Merged-chr10-83344003-4	chr10	83343514	83344514	+	816.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6197.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-8680646-4	chr13	8680148	8681148	+	816.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110345, intron 4 of 10)	intron (NR_110345, intron 4 of 10)	190396.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-137927077-4	chr1	137926575	137927575	+	816.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39380.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97496193-4	chr6	97495727	97496727	+	816.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-8407.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	2.5	15.5	3.0	2.5	9.5	6.0
Merged-chr13-49162865-3	chr13	49162375	49163375	+	816.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14547.0	NM_001290311	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67283717-3	chr10	67283216	67284216	+	816.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001036293, intron 1 of 3)	intron (NM_001036293, intron 1 of 3)	1565.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-107611807-4	chr5	107611308	107612308	+	816.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359917, intron 6 of 12)	intron (NM_001359917, intron 6 of 12)	13847.0	NM_001359916	231571.0	Mm.482420	NM_144911	ENSMUSG00000033773	Rpap2	AW060207	RNA polymerase II associated protein 2	protein-coding	0.0	18.0	8.0	0.0	13.0	9.5
Merged-chr7-3595394-4	chr7	3594876	3595876	+	816.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20781.0	NM_175632	232790.0	Mm.358882	NM_175632	ENSMUSG00000054594	Oscar	mOSCAR|mOSCAR-M1|mOSCAR-M2|mOSCAR-M3	osteoclast associated receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89474086-4	chr3	89473634	89474634	+	816.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	14563.0	NM_027348	68603.0	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-64600502-3	chr11	64600034	64601034	+	816.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-163860.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	8.5	4.5	4.5	6.0	3.5	6.5
Merged-chr2-25293084-3	chr2	25292561	25293561	+	816.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008169, intron 19 of 19)	intron (NM_008169, intron 19 of 19)	1841.0	NM_001242940	320354.0	Mm.445875	NM_001242940		Grin1os	E130003G02Rik	glutamate receptor, ionotropic, NMDA1 (zeta 1), opposite strand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94919666-5	chr8	94919142	94920142	+	816.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1544.0	NM_001033533	234582.0	Mm.277871	NM_001033533	ENSMUSG00000063605	Ccdc102a	BC027663|Gm586	coiled-coil domain containing 102A	protein-coding	4.5	5.5	3.5	0.0	0.0	6.0
Merged-chr11-90245023-4	chr11	90244520	90245520	+	816.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4456.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166108522-3	chr2	166108016	166109016	+	816.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252579, intron 3 of 20)	intron (NM_001252579, intron 3 of 20)	46769.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	1.5	0.0	1.0	1.5	1.0	8.0
Merged-chr3-88072022-4	chr3	88071515	88072515	+	816.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172526, intron 6 of 9)	intron (NM_172526, intron 6 of 9)	6289.0	NM_172526	214191.0	Mm.229191	NM_172526	ENSMUSG00000051036	Ttc24	A430025D11Rik	tetratricopeptide repeat domain 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-61577044-2	chr2	61576544	61577544	+	816.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1542.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76832845-2	chr12	76832345	76833345	+	816.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4622.0	NM_145927	110606.0	Mm.151174	NM_145927	ENSMUSG00000033373	Fntb	2010013E13Rik|AA409500	farnesyltransferase, CAAX box, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79467102-4	chr15	79466598	79467598	+	816.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24955.0	NM_001359863	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60224312-2	chr11	60223812	60224812	+	816.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1731.0	NM_001358315	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71368520-4	chr8	71367963	71368963	+	816.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025917, intron 4 of 7)	intron (NM_025917, intron 4 of 7)	1246.0	NM_025917	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	25.0	128.0	49.5	32.5	64.0	42.5
Merged-chr17-56267050-2	chr17	56266596	56267596	+	816.150024	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	9671.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114996783-5	chr11	114996201	114997201	+	816.133362	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_134158)	TTS (NM_134158)	5179.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	12.0	51.0	27.5	15.5	47.0	23.5
Merged-chr3-31139229-4	chr3	31138715	31139715	+	816.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10705.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128499505-2	chr10	128499018	128500018	+	816.125	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_172259)	promoter-TSS (NM_172259)	271.0	NR_131151	654440.0	Mm.441262	NR_131150	ENSMUSG00000097353	A430046D13Rik	-	Riken cDNA A430046D13 gene	ncRNA	12.5	24.0	11.5	1.5	8.0	7.5
Merged-chr6-108428589-3	chr6	108428092	108429092	+	816.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 40 of 61)	intron (NM_010585, intron 40 of 61)	-61151.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-41973477-3	chr15	41972973	41973973	+	816.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103753.0	NM_175456	223513.0	Mm.148913	NM_175456	ENSMUSG00000042895	Abra	C130068O12Rik|STARS	actin-binding Rho activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13681778-3	chr9	13681284	13682284	+	816.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173776, intron 1 of 3)	intron (NM_173776, intron 1 of 3)	19324.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121704249-5	chr11	121703807	121704807	+	816.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144797, intron 1 of 3)	intron (NM_144797, intron 1 of 3)	1880.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31199780-2	chr5	31199280	31200280	+	816.099976	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153680)	TTS (NM_153680)	2262.0	NM_001177901	101023.0	Mm.45033	NM_175311	ENSMUSG00000043059	Zfp513	AW990386|D430028M17Rik|Znf513	zinc finger protein 513	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-73709804-4	chr6	73709322	73710322	+	816.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-238801.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	0.0	1.0	1.5	1.0	11.0	0.5
Merged-chr2-173219762-2	chr2	173219262	173220262	+	816.071411	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021394)	promoter-TSS (NM_021394)	-840.0	NM_001139519	58203.0	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-16043555-3	chr3	16043061	16044061	+	816.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37229.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116186693-4	chr6	116186200	116187200	+	816.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 1 of 5)	intron (NM_177412, intron 1 of 5)	6674.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36238890-5	chr18	36238576	36239576	+	816.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-41916.0	NM_001167891	100042150.0	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102448420-3	chr12	102447851	102448851	+	816.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-8538.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	4.0	7.5	13.0	4.5	12.5	6.0
Merged-chr15-63614345-4	chr15	63613899	63614899	+	816.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-134791.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	30.0	85.5	75.5	50.5	67.5	54.0
Merged-chr2-166977745-4	chr2	166977269	166978269	+	816.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109905, intron 1 of 11)	intron (NM_001109905, intron 1 of 11)	-13052.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-100161248-2	chr3	100160741	100161741	+	816.041626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355657, intron 1 of 26)	intron (NM_001355657, intron 1 of 26)	1166.0	NM_175552	269470.0	Mm.24591	NM_175552	ENSMUSG00000033285	Wdr3	AW546279|D030020G18Rik	WD repeat domain 3	protein-coding	6.5	45.0	35.0	23.5	35.5	33.5
Merged-chr5-34973513-2	chr5	34973013	34974013	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173402, intron 2 of 16)	L1MB3|LINE|L1	24065.0	NM_173402	71729.0	Mm.196208	NM_173402	ENSMUSG00000029101	Rgs12	1200016K18Rik|4632412M04Rik|AI481290|E130309H11	regulator of G-protein signaling 12	protein-coding	0.0	0.0	1.5	0.0	0.0	0.5
Merged-chr11-83704556-2	chr11	83704056	83705056	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081957, intron 1 of 2)	intron (NM_001081957, intron 1 of 2)	500.0	NM_001081957	100034251.0	Mm.24097	NM_001081957	ENSMUSG00000069792	Wfdc17	Amwap|Gm11428	WAP four-disulfide core domain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62209767-2	chr15	62209267	62210267	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 3 of 6)	B2_Mm2|SINE|B2	9684.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97033514-1	chr7	97033014	97034014	+	816.0	f1_c57bl6.idr	intron (NM_153591, intron 9 of 13)	ID_B1|SINE|B4	-48237.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.5	4.5	1.5	0.0	7.5	4.0
Merged-chr18-38423207-2	chr18	38422707	38423707	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	B2_Mm1a|SINE|B2	4300.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-105479992-3	chr9	105479521	105480521	+	816.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253831, intron 1 of 26)	L1M3|LINE|L1	15112.0	NM_175025	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	5.5	5.0	4.5	8.0	0.5	2.5
Merged-chr2-34752459-3	chr2	34751953	34752953	+	816.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151469, intron 2 of 26)	intron (NR_151469, intron 2 of 26)	2779.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135422470-2	chr3	135421970	135422970	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025902, intron 1 of 2)	intron (NM_025902, intron 1 of 2)	963.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29531349-2	chr6	29530849	29531849	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252382, intron 2 of 8)	intron (NM_001252382, intron 2 of 8)	2067.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-69531605-2	chr13	69531089	69532089	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198600, intron 1 of 12)	intron (NM_198600, intron 1 of 12)	2275.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	10.5	9.5	3.5	13.5	4.5	25.5
Merged-chr5-38480958-2	chr5	38480568	38481568	+	816.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102414)	promoter-TSS (NM_001102414)	-762.0	NM_001102415	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	7.5	1.0	0.5	0.0	0.0	1.0
Merged-chr13-79054658-2	chr13	79054158	79055158	+	816.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-855785.0	NM_010151	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-63681348-2	chr18	63680848	63681848	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016792, intron 2 of 7)	intron (NM_016792, intron 2 of 7)	11011.0	NM_016792	53382.0	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132962209-2	chr4	132961709	132962709	+	816.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11886.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	34.0	81.0	38.0	33.5	79.0	33.0
Merged-chr7-133045497-2	chr7	133044997	133045997	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	-30250.0	NM_001170744	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-10772417-1	chr18	10771917	10772917	+	816.0	f0_balb.idr	intron (NM_144860, intron 10 of 20)	intron (NM_144860, intron 10 of 20)	10559.0	NR_029547	387151.0		NR_029547	ENSMUSG00000065399	Mir133a-1	Mirn133|Mirn133a-1|mir-133a-1	microRNA 133a-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56029778-2	chr17	56029278	56030278	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013664, intron 1 of 9)	intron (NM_013664, intron 1 of 9)	6859.0	NM_013664	20405.0	Mm.1773	NM_013664	ENSMUSG00000003200	Sh3gl1	C77078|EEN|SH3P8|Sh3d2b	SH3-domain GRB2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32144860-2	chr16	32144360	32145360	+	816.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347182, exon 2 of 2)	exon (NM_001347182, exon 2 of 2)	20734.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17930340-2	chr16	17929840	17930840	+	816.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2121.0	NM_153150	13358.0	Mm.229291	NM_153150	ENSMUSG00000003528	Slc25a1	1300019P08Rik|2610100G11Rik|AI194714|Ctp|Dgsj|Slc20a3	solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118706851-1	chr7	118706351	118707351	+	816.0	f1_balb.idr	Intergenic	Intergenic	-1113.0	NM_019580	56209.0	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	1.5	7.0	8.0	0.0	4.5	2.5
Merged-chr3-89217756-2	chr3	89217256	89218256	+	816.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013691, exon 3 of 23)	exon (NM_013691, exon 3 of 23)	1168.0	NR_149740	21827.0	Mm.2114	NM_013691	ENSMUSG00000028047	Thbs3	TSP3|Thbs-3	thrombospondin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64339501-1	chr5	64339001	64340001	+	816.0	f1_c57bl6.idr	intron (NM_001289514, intron 16 of 18)	intron (NM_001289514, intron 16 of 18)	109144.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	21.0	49.0	29.5	15.0	2.0	9.5
Merged-chr9-107625380-1	chr9	107624880	107625880	+	816.0	f1_c57bl6.idr	intron (NM_008138, intron 1 of 8)	intron (NM_008138, intron 1 of 8)	9962.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	30.5	66.0	55.5	22.5	69.0	38.5
Merged-chr12-113113723-2	chr12	113113223	113114223	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346696, intron 2 of 19)	intron (NM_001346696, intron 2 of 19)	15445.0	NM_054081	116870.0	Mm.212577	NM_054081	ENSMUSG00000021144	Mta1	-	metastasis associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113653004-2	chr5	113652504	113653504	+	816.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1-int|LTR|ERVL-MaLR	-2614.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-89599886-1	chr10	89599386	89600386	+	816.0	f1_balb.idr	promoter-TSS (NM_001310710)	promoter-TSS (NM_001310710)	-71.0	NM_001310710	216227.0	Mm.233921	NM_182959	ENSMUSG00000019935	Slc17a8	BC042593|Vglut3	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8	protein-coding	9.0	13.5	9.0	7.0	7.0	14.0
Merged-chr12-110847632-2	chr12	110847132	110848132	+	816.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2647.0	NM_001199785	72805.0	Mm.443524	NM_028365	ENSMUSG00000021271	Zfp839	2810455K09Rik	zinc finger protein 839	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29436913-2	chr19	29436413	29437413	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 2 of 5)	intron (NM_021396, intron 2 of 5)	25994.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-107602944-2	chr7	107602444	107603444	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008905, intron 1 of 24)	intron (NM_008905, intron 1 of 24)	-3900.0	NM_001163557	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28148737-2	chr7	28148237	28149237	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164655, intron 9 of 19)	intron (NM_001164655, intron 9 of 19)	19271.0	NM_001164655	319482.0	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-37008954-2	chr15	37008454	37009454	+	816.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1552.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5387449-1	chr19	5386949	5387949	+	816.0	f1_c57bl6.idr	promoter-TSS (NR_033224)	promoter-TSS (NR_033224)	-887.0	NR_033224	414115.0	Mm.483102	NR_033224		D330050I16Rik	-	RIKEN cDNA D330050I16 gene	ncRNA	0.0	1.0	6.0	0.0	1.5	4.0
Merged-chr11-79071655-2	chr11	79071155	79072155	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 2 of 17)	intron (NM_013571, intron 2 of 17)	-11819.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35125356-1	chr8	35124856	35125856	+	816.0	f1_c57bl6.idr	Intergenic	Intergenic	-159666.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	5.0	1.5	8.5	5.5	5.5	4.0
Merged-chr4-49628003-2	chr4	49627503	49628503	+	816.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-4057.0	NM_001163263	109331.0	Mm.24765	NM_182999	ENSMUSG00000028309	Rnf20	4833430L21Rik|AW540162|C79397|mKIAA4116	ring finger protein 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70009109-2	chr11	70008609	70009609	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007888, intron 14 of 14)	intron (NM_007888, intron 14 of 14)	-2934.0	NR_029758	723896.0		NR_029758	ENSMUSG00000065534	Mir324	Mirn324|mir-324|mmu-mir-324	microRNA 324	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-119614893-2	chr10	119614393	119615393	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133442, intron 1 of 21)	intron (NM_133442, intron 1 of 21)	146806.0	NR_045359	75321.0	Mm.402041	NR_045359	ENSMUSG00000084764	Grip1os2	4930564G21Rik	glutamate receptor interacting protein 1, opposite strand 2	ncRNA	5.0	1.5	8.0	1.0	2.5	8.5
Merged-chr15-100601830-3	chr15	100601273	100602273	+	816.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3A1|LTR|ERVK	-1789.0	NM_001304965	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32253861-2	chr4	32253361	32254361	+	816.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-163574.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4594304-1	chr11	4593804	4594804	+	816.0	f0_balb.idr	intron (NM_028860, intron 1 of 17)	CpG	511.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90164086-1	chr9	90163586	90164586	+	816.0	f1_c57bl6.idr	intron (NM_001003911, intron 1 of 23)	intron (NM_001003911, intron 1 of 23)	1108.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	6.0	1.0	0.0	6.0	0.0	2.0
Merged-chr11-63908693-4	chr11	63908182	63909182	+	815.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018805, intron 1 of 1)	ORR1E|LTR|ERVL-MaLR	13602.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	44.0	47.0	62.5	5.5	40.0	29.5
Merged-chr16-17559147-3	chr16	17558591	17559591	+	815.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145435, intron 3 of 7)	intron (NM_001145435, intron 3 of 7)	2156.0	NM_029053	74685.0	Mm.38634	NM_029053	ENSMUSG00000022759	Lrrc74b	4930451C15Rik|mCG12354|mCP17390	leucine rich repeat containing 74B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45046791-6	chr19	45046245	45047245	+	815.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001178013)	promoter-TSS (NM_001178013)	-831.0	NM_001362380	94280.0	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-73902466-4	chr1	73901954	73902954	+	815.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37988.0	NR_045311	109198.0	Mm.359721	NR_045311	ENSMUSG00000100301	6030407O03Rik	-	RIKEN cDNA 6030407O03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7076379-4	chr10	7075897	7076897	+	815.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53212.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40343284-3	chr9	40342797	40343797	+	815.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040728)	TTS (NR_040728)	2948.0	NM_001357623	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122742646-3	chr6	122742161	122743161	+	815.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011401)	promoter-TSS (NM_011401)	84.0	NM_011401	20527.0	Mm.395108	NM_011401	ENSMUSG00000003153	Slc2a3	AA408729|AL023014|AL024341|AU040424|C78366|Glut-3|Glut3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100447127-2	chr15	100446623	100447623	+	815.916687	f0_balb.idr|f1_balb.idr	Intergenic	PB1D10|SINE|Alu	-21888.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	3.5	10.5	10.5	5.5	4.5	12.5
Merged-chr9-22394958-4	chr9	22394451	22395451	+	815.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-5745.0	NM_028390	68743.0	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84938704-4	chr2	84938173	84939173	+	815.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021398, intron 3 of 12)	intron (NM_021398, intron 3 of 12)	2027.0	NM_021398	58207.0	Mm.290729	NM_021398	ENSMUSG00000027074	Slc43a3	Eeg1|SEEEG-1	solute carrier family 43, member 3	protein-coding	0.0	0.0	1.0	0.5	2.0	4.5
Merged-chr9-110623214-4	chr9	110622707	110623707	+	815.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026012, exon 2 of 5)	5' UTR (NM_026012, exon 2 of 5)	1186.0	NM_026012	67169.0	Mm.46680	NM_026012	ENSMUSG00000032491	Nradd	2610311B09Rik|BB104149|NRDD|NRH2|PLAIDD	neurotrophin receptor associated death domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112343788-4	chr13	112343276	112344276	+	815.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168403, intron 6 of 11)	intron (NM_001168403, intron 6 of 11)	55258.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	1.0	8.5	5.0	0.0	4.5	4.0
Merged-chr17-48192590-3	chr17	48192080	48193080	+	815.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25323.0	NM_178796	328830.0	Mm.470939	NM_178796	ENSMUSG00000043939	A530064D06Rik	Trem4|pdctrem	RIKEN cDNA A530064D06 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30287246-3	chr7	30286743	30287743	+	815.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_144498, intron 2 of 2)	intron (NR_144498, intron 2 of 2)	-4452.0	NM_001360763	76686.0	Mm.159258	NM_001081114	ENSMUSG00000013921	Clip3	1500005P14Rik|AI844915|Clipr-59	CAP-GLY domain containing linker protein 3	protein-coding	8.0	9.0	12.0	4.0	7.5	13.0
Merged-chr7-140078892-3	chr7	140078398	140079398	+	815.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026769, intron 1 of 5)	B3|SINE|B2	3403.0	NM_001190386	68566.0	Mm.44241	NM_026769	ENSMUSG00000025468	Caly	0710001P07Rik|1110004A22Rik|Calcyon|Drd1ip	calcyon neuron-specific vesicular protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24445415-3	chr13	24444909	24445909	+	815.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111110, intron 11 of 16)	L1MEf|LINE|L1	30287.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91929505-4	chr2	91928890	91929890	+	815.8809809999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291483)	TTS (NM_001291483)	2312.0	NM_001291481	17242.0	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	3.5	4.0	5.0	0.0	0.0	1.0
Merged-chr3-94891500-4	chr3	94890978	94891978	+	815.875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-4520.0	NM_008945	19172.0	Mm.368	NM_008945	ENSMUSG00000005779	Psmb4	Pros-27	proteasome (prosome, macropain) subunit, beta type 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr19-55781862-4	chr19	55781372	55782372	+	815.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	40062.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	7.5	17.0	3.5	0.5	16.0	0.5
Merged-chr4-70578462-4	chr4	70577964	70578964	+	815.854187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14-int|LTR|ERV1	-43536.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84386869-2	chr2	84386369	84387369	+	815.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_018782, intron 2 of 15)	intron (NM_018782, intron 2 of 15)	38397.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	40.5	53.5	46.5	22.5	28.0	42.0
Merged-chr11-62649243-2	chr11	62648743	62649743	+	815.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198861)	promoter-TSS (NM_198861)	579.0	NM_175002	216829.0	Mm.295306	NM_175002	ENSMUSG00000048497	Mmgt2	AI852046	membrane magnesium transporter 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-71000503-2	chr12	71000003	71001003	+	815.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_045055, intron 3 of 3)	B1_Mur1|SINE|Alu	15320.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28763822-2	chr7	28763344	28764344	+	815.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001306222, intron 1 of 5)	B3|SINE|B2	2800.0	NM_001306222	18036.0	Mm.220333	NM_010908	ENSMUSG00000030595	Nfkbib	I(Kappa)B(beta)|I-kappa-B-beta|IKB-beta|IKappaBbeta|IkB|IkBb|NF-kappa-BIB|ikB-B	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, beta	protein-coding	0.0	0.0	0.0	1.5	0.0	0.0
Merged-chr17-48118802-4	chr17	48118322	48119322	+	815.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27485.0	NM_001177897	328829.0	Mm.466999	NM_177824	ENSMUSG00000073386	9830107B12Rik	Trem5	RIKEN cDNA 9830107B12 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr3-116133507-3	chr3	116133001	116134001	+	815.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3813.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	2.0	19.0	3.0	3.5	3.5	10.5
Merged-chr2-128082774-3	chr2	128082269	128083269	+	815.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028765, intron 15 of 17)	intron (NM_028765, intron 15 of 17)	-43269.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-18237188-6	chr14	18236632	18237632	+	815.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011584, intron 1 of 7)	intron (NM_011584, intron 1 of 7)	1974.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110934859-3	chr12	110934360	110935360	+	815.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175336, intron 10 of 20)	intron (NM_175336, intron 10 of 20)	43758.0	NM_001361917	74251.0	Mm.250989	NM_175207	ENSMUSG00000037904	Ankrd9	2500003O20Rik	ankyrin repeat domain 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84698921-3	chr17	84698409	84699409	+	815.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_104382, exon 13 of 14)	non-coding (NR_104382, exon 13 of 14)	15788.0	NM_026180	67470.0	Mm.26581	NM_026180	ENSMUSG00000024254	Abcg8	1300003C16Rik|AI114946|sterolin-2	ATP binding cassette subfamily G member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150218104-6	chr2	150217596	150218596	+	815.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142411)	promoter-TSS (NM_001142411)	-3.0	NM_001142411	245174.0	Mm.378428	NM_001142411	ENSMUSG00000060336	Zfp937	EG245174|Gm4979|ZIPO-I	zinc finger protein 937	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105799118-5	chr3	105798631	105799631	+	815.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145541, intron 1 of 7)	intron (NM_145541, intron 1 of 7)	2250.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	25.5	37.0	35.5	11.5	20.5	36.0
Merged-chr2-167570074-4	chr2	167569578	167570578	+	815.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31883.0	NM_011427	20613.0	Mm.2093	NM_011427	ENSMUSG00000042821	Snai1	Sna|Sna1|Snail|Snail1	snail family zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121865281-4	chr14	121864708	121865708	+	815.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F3|LINE|L1	13062.0	NR_131002	78312.0	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5073358-2	chr19	5072858	5073858	+	815.785706	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5280.0	NM_054042	70445.0	Mm.29597	NM_054042	ENSMUSG00000056481	Cd248	2610111G01Rik|AI842296|Cd164l1|Tem1	CD248 antigen, endosialin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99094067-3	chr15	99093553	99094553	+	815.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5431.0	NM_176835	72778.0	Mm.30544	NM_176835	ENSMUSG00000038009	Dnajc22	2810451A06Rik|AI506245	DnaJ heat shock protein family (Hsp40) member C22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4594556-6	chr16	4594092	4595092	+	815.777771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031184)	promoter-TSS (NM_031184)	-121.0	NM_031184	83396.0	Mm.134072	NM_031184	ENSMUSG00000014303	Glis2	Gli5|Klf16|Nkl	GLIS family zinc finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-116512682-3	chr10	116512181	116513181	+	815.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037848, intron 4 of 4)	intron (NM_001037848, intron 4 of 4)	15268.0	NM_001359253	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114782146-4	chr6	114781629	114782629	+	815.770813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	139032.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-89354870-2	chr12	89354370	89355370	+	815.766663	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198587, intron 9 of 19)	intron (NM_001198587, intron 9 of 19)	401480.0	NM_172544	18191.0	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89159540-2	chr3	89159040	89160040	+	815.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008227, intron 1 of 7)	intron (NM_008227, intron 1 of 7)	617.0	NM_008227	15168.0	Mm.389461	NM_008227	ENSMUSG00000028051	Hcn3	BCNG-4|Bcng4|Hac3|Hcn4	hyperpolarization-activated, cyclic nucleotide-gated K+ 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104714446-4	chr3	104713976	104714976	+	815.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63071.0	NM_183224	329731.0	Mm.389494	NM_183224	ENSMUSG00000055865	Fam19a3	7530404M11Rik|Sam3|TAFA3|Tafa-3	family with sequence similarity 19, member A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33890809-2	chr16	33890309	33891309	+	815.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 5 of 14)	ID_B1|SINE|B4	61144.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134151892-4	chr1	134151392	134152392	+	815.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001284524)	TTS (NM_001284524)	-30512.0	NM_007695	12654.0	Mm.38274	NM_007695	ENSMUSG00000064246	Chil1	AW208766|Brp39|Chi3l1|Gp39	chitinase-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83631444-4	chr17	83630927	83631927	+	815.729187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153512, exon 1 of 2)	exon (NM_153512, exon 1 of 2)	468.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46585177-3	chr4	46584718	46585718	+	815.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 1 of 11)	intron (NM_001164804, intron 1 of 11)	16711.0	NM_001164804	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	0.0	4.5	2.0	20.0	42.5	22.5
Merged-chr9-123857104-4	chr9	123856715	123857715	+	815.71875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011798, intron 1 of 1)	intron (NM_011798, intron 1 of 1)	4814.0	NM_011798	23832.0	Mm.390241	NM_011798	ENSMUSG00000060509	Xcr1	Ccxcr1|Gpr5|mXcr1	chemokine (C motif) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30624442-4	chr14	30623941	30624941	+	815.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	1767.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-68175284-4	chr8	68174799	68175799	+	815.700012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR25A|LTR|ERVK	-101229.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	26.0	25.0	16.0	8.0	6.5	15.5
Merged-chr15-38342927-3	chr15	38342431	38343431	+	815.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-42220.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-59052632-3	chr12	59052134	59053134	+	815.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001306217, intron 1 of 4)	Lx9|LINE|L1	8838.0	NM_001306218	78232.0	Mm.290070	NM_030057	ENSMUSG00000020993	Trappc6b	5830498C14Rik|C79212	trafficking protein particle complex 6B	protein-coding	0.5	3.5	0.5	0.5	3.5	4.5
Merged-chr2-18643439-2	chr2	18642939	18643939	+	815.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29023.0	NM_147778	12238.0	Mm.249586	NM_147778	ENSMUSG00000051154	Commd3	AW550818|Bup|D2Ertd542e	COMM domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75451550-2	chr11	75451050	75452050	+	815.666687	f1_balb.idr|f1_c57bl6.idr	exon (NM_138950, exon 1 of 10)	exon (NM_138950, exon 1 of 10)	3167.0	NM_138950	192652.0	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114315287-3	chr5	114314807	114315807	+	815.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164573, intron 1 of 30)	MLT1K|LTR|ERVL-MaLR	366.0	NM_001164573	231646.0	Mm.238285	NM_146163	ENSMUSG00000066952	Myo1h	4631401O15Rik	myosin 1H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116014770-2	chr6	116014270	116015270	+	815.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19765.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72243961-2	chr5	72243461	72244461	+	815.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 5 of 22)	intron (NR_003966, intron 5 of 22)	40618.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-63150110-2	chr15	63149600	63150600	+	815.666626	f0_balb.idr|f1_balb.idr	Intergenic	L3|LINE|CR1	329508.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	4.0	7.0	0.5	4.5	17.0	3.0
Merged-chr7-128475455-2	chr7	128474955	128475955	+	815.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-13782.0	NM_001347640	21843.0	Mm.242072	NM_009383	ENSMUSG00000030846	Tial1	5330433G13Rik|AL033329|TIAR|mTIAR	Tia1 cytotoxic granule-associated RNA binding protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-46907249-4	chr13	46906745	46907745	+	815.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010617, intron 2 of 37)	intron (NM_010617, intron 2 of 37)	22473.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	18.0	45.0	34.5	11.0	25.0	13.5
Merged-chr1-136559953-4	chr1	136559453	136560453	+	815.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64948.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165957454-4	chr2	165956809	165957809	+	815.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35328.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	32.0	96.0	79.0	43.5	66.0	54.5
Merged-chr7-43532492-4	chr7	43531901	43532901	+	815.614563	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111058, intron 2 of 6)	intron (NM_001111058, intron 2 of 6)	770.0	NM_001111058	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24571085-4	chr2	24570572	24571572	+	815.608337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95473.0	NM_011040	18510.0	Mm.2533	NM_011040	ENSMUSG00000026976	Pax8	Pax-8	paired box 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73621091-2	chr7	73620591	73621591	+	815.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19A2|LTR|ERVK	-62696.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26501182-5	chr17	26500716	26501716	+	815.599976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7256.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100131906-2	chr12	100131406	100132406	+	815.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290303, intron 10 of 13)	intron (NM_001290303, intron 10 of 13)	19575.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-113733753-4	chr11	113733258	113734258	+	815.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163346, intron 1 of 1)	intron (NM_001163346, intron 1 of 1)	17402.0	NM_020006	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136499347-4	chr6	136498819	136499819	+	815.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-19532.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	3.0	22.0	6.0	7.0	0.0	5.0
Merged-chr13-98955848-3	chr13	98955400	98956400	+	815.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	28665.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	18.0	52.0	31.5	12.5	46.5	29.0
Merged-chr2-30435847-6	chr2	30435324	30436324	+	815.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138748, intron 5 of 9)	(TG)n|Simple_repeat|Simple_repeat	19774.0	NM_138748	110854.0	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131690014-4	chr1	131689577	131690577	+	815.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145509, intron 1 of 5)	intron (NM_145509, intron 1 of 5)	1382.0	NM_145509	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	110.0	168.0	142.0	66.5	90.5	116.0
Merged-chr1-180794356-4	chr1	180793894	180794894	+	815.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	19211.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-94264615-4	chr2	94264125	94265125	+	815.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3226.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5873971-4	chr13	5873451	5874451	+	815.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12462.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-5126635-3	chr15	5126126	5127126	+	815.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	8205.0	NR_028091	100302529.0		NR_028091		Snord72	MBII-240	small nucleolar RNA, C/D box 72	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67207254-4	chr17	67206759	67207759	+	815.5500490000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	147200.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	37.0	19.5	47.0	1.5	30.0	18.0
Merged-chr8-111157803-3	chr8	111157316	111158316	+	815.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009149, exon 26 of 26)	3' UTR (NM_009149, exon 26 of 26)	-12318.0	NR_040364	434350.0	Mm.442061	NR_040363		9430091E24Rik	-	RIKEN cDNA 9430091E24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130827414-3	chr4	130826902	130827902	+	815.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34865.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77537680-2	chr15	77537183	77538183	+	815.533325	f0_c57.idr|f1_c57bl6.idr	Intergenic	RLTR14-int|LTR|ERV1	-4368.0	NM_175391	108956.0	Mm.86391	NM_175391	ENSMUSG00000044309	Apol7c	2210421G13Rik	apolipoprotein L 7c	protein-coding	35.0	55.0	60.5	7.5	13.0	20.5
Merged-chr5-140737954-2	chr5	140737454	140738454	+	815.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	intron (NM_173405, intron 2 of 7)	13827.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22631072-2	chr11	22630572	22631572	+	815.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	118789.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	0.0	2.5	2.0	3.0	0.0	1.5
Merged-chr4-141963374-4	chr4	141962864	141963864	+	815.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 9 of 31)	intron (NM_177868, intron 9 of 31)	-19628.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126777760-2	chr7	126777260	126778260	+	815.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026875, intron 1 of 4)	intron (NM_026875, intron 1 of 4)	785.0	NM_025347	66090.0	Mm.27114	NM_025347	ENSMUSG00000042675	Ypel3	0610043B10Rik|1190001G19Rik|Suap	yippee like 3	protein-coding	0.5	6.0	5.0	1.5	6.0	4.0
Merged-chr19-51754387-2	chr19	51753887	51754887	+	815.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-509910.0	NM_008386	16333.0	Mm.46269	NM_008386	ENSMUSG00000035804	Ins1	Ins-1|Ins2-rs1	insulin I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-13588112-2	chr1	13587612	13588612	+	815.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028173, intron 1 of 10)	intron (NM_028173, intron 1 of 10)	1798.0	NM_028173	72265.0	Mm.28765	NM_028173	ENSMUSG00000025935	Tram1	1810049E02Rik|TRAMP	translocating chain-associating membrane protein 1	protein-coding	1.0	8.0	3.5	1.5	3.5	1.5
Merged-chr18-35019352-2	chr18	35018852	35019852	+	815.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65001.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26973711-2	chr17	26973211	26974211	+	815.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001005916, exon 2 of 2)	exon (NM_001005916, exon 2 of 2)	532.0	NM_001005916	474156.0	Mm.328890	NM_001005916	ENSMUSG00000079605	Zbtb9	3930402F13Rik	zinc finger and BTB domain containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-69557720-6	chr5	69557218	69558218	+	815.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310631, intron 1 of 14)	intron (NM_001310631, intron 1 of 14)	794.0	NM_001310631	231279.0	Mm.21105	NM_172711	ENSMUSG00000029208	Guf1	4631409J12|AA407526|EF-4	GUF1 homolog, GTPase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60936664-2	chr13	60936164	60937164	+	815.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007796)	promoter-TSS (NM_007796)	-39.0	NM_007796	13024.0	Mm.482089	NM_007796	ENSMUSG00000044258	Ctla2a	Ctla-2a	cytotoxic T lymphocyte-associated protein 2 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21286700-6	chr19	21286210	21287210	+	815.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009551, exon 6 of 6)	3' UTR (NM_009551, exon 6 of 6)	14432.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	0.5	10.5	4.0	12.5	9.5	4.0
Merged-chr4-100095914-3	chr4	100095429	100096429	+	815.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001312690, exon 1 of 4)	5' UTR (NM_001312690, exon 1 of 4)	138.0	NM_001312690	26563.0	Mm.57252	NM_013845	ENSMUSG00000035305	Ror1	2810404D04Rik|Ntrkr1	receptor tyrosine kinase-like orphan receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-90601755-2	chr1	90601255	90602255	+	815.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-1670.0	NM_133805	108679.0	Mm.119177	NM_133805	ENSMUSG00000034432	Cops8	9430009J09Rik|AA408242|Csn8|Sgn8	COP9 signalosome subunit 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105287019-2	chr8	105286519	105287519	+	815.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166394, intron 1 of 6)	L2b|LINE|L2	2509.0	NM_001166394	74356.0	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25071012-2	chr8	25070512	25071512	+	815.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 3 of 11)	intron (NM_031257, intron 3 of 11)	30799.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	13.0	15.0	14.5	17.0	25.5	21.5
Merged-chr8-25152975-2	chr8	25152475	25153475	+	815.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	6258.0	NR_106187	102467006.0		NR_106187	ENSMUSG00000099142	Mir8108	Gm27484|mmu-mir-8108	microRNA 8108	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70198526-1	chr11	70198026	70199026	+	815.5	f0_balb.idr	Intergenic	RLTR19B|LTR|ERVK	-15384.0	NM_153081	216867.0	Mm.289238	NM_153081	ENSMUSG00000040938	Slc16a11	AB041591|MCT 11|MNCb-2717	solute carrier family 16 (monocarboxylic acid transporters), member 11	protein-coding	0.0	0.0	3.0	2.5	0.0	0.0
Merged-chr6-38944127-2	chr6	38943627	38944627	+	815.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	ID_B1|SINE|B4	25141.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81000976-2	chr15	81000476	81001476	+	815.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357669, intron 1 of 20)	PB1D9|SINE|Alu	23211.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10022033-2	chr19	10021496	10022496	+	815.5	f0_balb.idr|f1_c57bl6.idr	intron (NR_153790, intron 1 of 10)	intron (NR_153790, intron 1 of 10)	3802.0	NM_001347430	74760.0	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	11.5	37.5	20.0	9.0	28.0	14.0
Merged-chr15-77832211-4	chr15	77831703	77832703	+	815.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	9972.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60705136-1	chr13	60704636	60705636	+	815.5	f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	intron (NM_134062, intron 3 of 26)	81228.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	26.0	8.5	8.5	3.5	14.0	21.0
Merged-chr9-108846348-2	chr9	108845848	108846848	+	815.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001359573, exon 32 of 36)	exon (NM_001359573, exon 32 of 36)	-7695.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	0.5	0.0	0.0	1.0	1.0	0.0
Merged-chr17-35148920-2	chr17	35148418	35149418	+	815.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_020027)	TTS (NM_020027)	13204.0	NM_001252469	224727.0	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	6.5	3.5	8.0	3.5	0.5	12.0
Merged-chr5-65885558-2	chr5	65885041	65886041	+	815.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	21972.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-12532643-2	chr11	12532143	12533143	+	815.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67683.0	NM_001282993	12808.0	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67431238-4	chr7	67430750	67431750	+	815.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58392.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	2.5	5.0	4.5	1.5	11.5	4.5
Merged-chr4-135973242-4	chr4	135972756	135973756	+	815.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011942)	promoter-TSS (NM_011942)	-662.0	NM_011942	26394.0	Mm.34302	NM_011942	ENSMUSG00000028670	Lypla2	LysoII	lysophospholipase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44284073-2	chr7	44283573	44284573	+	815.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10915.0	NM_001361137	102632142.0		NM_001361137		Gm18905	-	predicted gene, 18905	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr2-38511425-2	chr2	38510925	38511925	+	815.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159631)	promoter-TSS (NM_001159631)	-272.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12925887-2	chr13	12925387	12926387	+	815.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR46A|LTR|ERVK	79443.0	NM_031191	18811.0	Mm.88796	NM_031191	ENSMUSG00000079092	Prl2c2	Ghd2|MRP-1|PLF-1|Plf|Plf1	prolactin family 2, subfamily c, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91738057-2	chr6	91737557	91738557	+	815.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 6 of 14)	intron (NM_009320, intron 6 of 14)	53990.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-176825907-4	chr1	176825407	176826407	+	815.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 2 of 18)	intron (NM_001357390, intron 2 of 18)	10226.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	43.0	65.5	78.0	48.0	84.0	52.5
Merged-chr6-137724072-4	chr6	137723575	137724575	+	815.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11007.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70525892-2	chr11	70525392	70526392	+	815.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008946, exon 2 of 6)	exon (NM_008946, exon 2 of 6)	535.0	NM_008946	19175.0	Mm.98	NM_008946	ENSMUSG00000018286	Psmb6	Lmp19|Mpnd	proteasome (prosome, macropain) subunit, beta type 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-179975282-2	chr2	179974782	179975782	+	815.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081092, intron 1 of 14)	intron (NM_001081092, intron 1 of 14)	1364.0	NM_001081092	228980.0	Mm.235542	NM_001081092	ENSMUSG00000039117	Taf4	135kDa|AI450312|TAFII130|TAFII135|Taf2c1|Taf4a	TATA-box binding protein associated factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27508460-2	chr2	27507960	27508960	+	815.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-6687.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89149048-2	chr15	89148548	89149548	+	815.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011161, intron 1 of 11)	intron (NM_011161, intron 1 of 11)	558.0	NM_011161	19094.0	Mm.91969	NM_011161	ENSMUSG00000053137	Mapk11	P38b|Prkm11|Sapk2|Sapk2b|p38-2|p38beta|p38beta2	mitogen-activated protein kinase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85280543-2	chr1	85280047	85281047	+	815.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-9981.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64751357-4	chr17	64750853	64751853	+	815.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 21 of 21)	intron (NM_008549, intron 21 of 21)	-15758.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110471039-2	chr7	110470539	110471539	+	815.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 3 of 40)	intron (NM_177324, intron 3 of 40)	143881.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95155787-2	chr10	95155287	95156287	+	815.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9962.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120129182-2	chr9	120128682	120129682	+	815.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011029, exon 3 of 7)	exon (NM_011029, exon 3 of 7)	-1252.0	NR_002902	104433.0	Mm.453530	NR_002902	ENSMUSG00000064925	Snora62	E2|MBI-13|MBI-136|Rnu108	small nucleolar RNA, H/ACA box 62	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6584527-2	chr15	6584027	6585027	+	815.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011815, intron 1 of 17)	B3|SINE|B2	4680.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117837412-4	chr10	117836887	117837887	+	815.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	8587.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38288135-2	chr15	38287635	38288635	+	815.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	11765.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-44980698-6	chr2	44980196	44981196	+	815.460327	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42481.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4134323-4	chr7	4133834	4134834	+	815.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001305822, exon 14 of 14)	3' UTR (NM_001305822, exon 14 of 14)	2592.0	NR_033548	100037396.0	Mm.447887	NR_033548	ENSMUSG00000085886	D030047H15Rik	Gm15924	RIKEN cDNA D030047H15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57363031-4	chr17	57362540	57363540	+	815.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 2 of 22)	RLTR22_Mur|LTR|ERVK	4354.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77834779-3	chr9	77834261	77835261	+	815.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80226.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	1.0	0.0	0.0	0.0	1.5	0.0
Merged-chr13-55464439-6	chr13	55464011	55465011	+	815.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001030296, intron 1 of 2)	CpG	244.0	NM_001030296	432763.0	Mm.315457	NM_001030296	ENSMUSG00000034686	Prr7	XM_484263	proline rich 7 (synaptic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25715437-3	chr8	25714931	25715931	+	815.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081269, exon 23 of 23)	3' UTR (NM_001081269, exon 23 of 23)	-4617.0	NR_121642	71910.0	Mm.385055	NM_028000	ENSMUSG00000031570	Plpp5	1810019D05Rik|2310022A04Rik|AW045471|Ppapdc1|Ppapdc1b	phospholipid phosphatase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113670638-3	chr5	113670055	113671055	+	815.43335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-20165.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-172996388-2	chr2	172995863	172996863	+	815.416687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3754.0	NM_175112	66679.0	Mm.4113	NM_175112	ENSMUSG00000027509	Rae1	3230401I12Rik|D2Ertd342e|MNRP|MNRP41	ribonucleic acid export 1	protein-coding	5.0	0.0	2.0	1.0	0.0	6.0
Merged-chr4-135899280-4	chr4	135898770	135899770	+	815.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009924, intron 1 of 1)	intron (NM_009924, intron 1 of 1)	4081.0	NM_009924	12802.0	Mm.297251	NM_009924	ENSMUSG00000062585	Cnr2	CB-2|CB2|CB2-R	cannabinoid receptor 2 (macrophage)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105306185-3	chr4	105305684	105306684	+	815.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	148837.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166080652-2	chr2	166080152	166081152	+	815.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252579, intron 14 of 20)	intron (NM_001252579, intron 14 of 20)	74633.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-42658897-2	chr17	42658397	42659397	+	815.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289499, intron 9 of 9)	B1_Mus1|SINE|Alu	33387.0	NM_001289501	78249.0	Mm.66217	NM_030067	ENSMUSG00000023918	Adgrf4	4632435A09Rik|AV239010|Gpr115	adhesion G protein-coupled receptor F4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-98302250-2	chr6	98301750	98302750	+	815.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128092, intron 2 of 3)	MTC|LTR|ERVL-MaLR	40504.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	0.0	2.5	1.0	0.0	0.0	0.0
Merged-chr10-127554138-2	chr10	127553618	127554618	+	815.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 58 of 88)	intron (NM_008512, intron 58 of 88)	-19559.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.0	0.0	0.0	0.0	4.5	2.0
Merged-chr9-119923506-2	chr9	119923006	119924006	+	815.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026236, intron 17 of 18)	intron (NM_026236, intron 17 of 18)	14052.0	NM_028976	74498.0	Mm.104789	NM_028976	ENSMUSG00000032513	Gorasp1	5430411C10Rik|GOLPH5|GRASP65|P65	golgi reassembly stacking protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49256877-2	chr13	49256377	49257377	+	815.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-8171.0	NM_028340	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125622639-3	chr6	125622132	125623132	+	815.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 18 of 51)	intron (NM_011708, intron 18 of 51)	-67787.0	NM_153589	243634.0	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4741795-3	chr19	4741263	4742263	+	815.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021287, intron 19 of 36)	LTR16C|LTR|ERVL	-14762.0	NM_025717	66704.0	Mm.396734	NM_025717	ENSMUSG00000033760	Rbm4b	4921506I22Rik|AI504630|AI506404|Lark2|Neosin	RNA binding motif protein 4B	protein-coding	1.5	6.0	4.5	0.5	5.0	5.0
Merged-chr5-146761047-1	chr5	146760547	146761547	+	815.333313	f0_c57.idr	intron (NM_011669, intron 3 of 8)	intron (NM_011669, intron 3 of 8)	33909.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	9.5	12.0	1.0	9.5	17.0	3.0
Merged-chr5-38259753-1	chr5	38259253	38260253	+	815.333313	f1_c57bl6.idr	promoter-TSS (NM_001356960)	promoter-TSS (NM_001356960)	-432.0	NM_001356960	66309.0	Mm.256185	NM_025480	ENSMUSG00000067365	Tmem128	2810021O14Rik	transmembrane protein 128	protein-coding	57.5	170.5	114.0	37.5	110.0	73.0
Merged-chr17-85023705-4	chr17	85023208	85024208	+	815.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159497, exon 6 of 6)	exon (NM_001159497, exon 6 of 6)	-4639.0	NM_009205	20532.0	Mm.227176	NM_009205	ENSMUSG00000024131	Slc3a1	D2H|NBAT|NTAA|RBAT	solute carrier family 3, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-55309731-4	chr9	55309233	55310233	+	815.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17180.0	NM_172923	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5130316-4	chr2	5129815	5130815	+	815.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7461.0	NM_028804	74186.0	Mm.274715	NM_028804	ENSMUSG00000026676	Ccdc3	2310045O21Rik	coiled-coil domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148535758-4	chr2	148535264	148536264	+	815.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92229.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	18.0	1.0	13.0	12.0	9.0	3.5
Merged-chr3-96593551-3	chr3	96593093	96594093	+	815.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027241, intron 1 of 7)	RSINE1|SINE|B4	588.0	NM_027241	69870.0	Mm.292739	NM_027241	ENSMUSG00000028104	Polr3gl	2010003I19Rik	polymerase (RNA) III (DNA directed) polypeptide G like	protein-coding	30.5	82.0	71.5	39.0	33.0	48.5
Merged-chr19-61080426-3	chr19	61079834	61080834	+	815.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 10 of 15)	intron (NM_018869, intron 10 of 15)	60506.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	2.0	2.0	1.0	0.0	0.5	0.0
Merged-chr7-19577492-6	chr7	19576959	19577959	+	815.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_022409, exon 1 of 3)	exon (NM_022409, exon 1 of 3)	172.0	NM_022409	63872.0	Mm.23310	NM_022409	ENSMUSG00000011267	Zfp296	2210018A16Rik|Znf296	zinc finger protein 296	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75550961-2	chr11	75550461	75551461	+	815.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_039553)	promoter-TSS (NR_039553)	-468.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	19.0	60.0	30.0	44.0	63.0	57.0
Merged-chr18-66479437-2	chr18	66478937	66479937	+	815.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	20833.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93543892-4	chr16	93543376	93544376	+	815.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59939.0	NM_145482	224440.0	Mm.10628	NM_145482	ENSMUSG00000022948	Setd4	AY037804|C21orf18|ORF21	SET domain containing 4	protein-coding	0.0	0.0	4.0	3.5	1.0	0.0
Merged-chr1-39603477-3	chr1	39602962	39603962	+	815.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-26115.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29403151-4	chr19	29402661	29403661	+	815.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7758.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-9392025-2	chr14	9391525	9392525	+	815.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR24|LTR|ERV1	-492070.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-169873631-3	chr2	169873132	169874132	+	815.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	89555.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	2.0	2.5	0.0	8.5	0.0	0.0
Merged-chr1-24677814-3	chr1	24677353	24678353	+	815.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026719)	promoter-TSS (NM_026719)	-691.0	NM_026719	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39368842-3	chr1	39368350	39369350	+	815.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252219, intron 2 of 4)	intron (NM_001252219, intron 2 of 4)	999.0	NM_001252218	114641.0	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-46218323-3	chr9	46217844	46218844	+	815.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 21 of 24)	intron (NM_027498, intron 21 of 24)	-10286.0	NM_009692	11806.0	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.0	0.5	1.0	0.0	3.5	0.0
Merged-chr10-80142991-3	chr10	80142456	80143456	+	815.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347092, intron 1 of 2)	intron (NM_001347092, intron 1 of 2)	641.0	NM_025313	66043.0	Mm.278560	NM_025313	ENSMUSG00000003072	Atp5d	0610008F14Rik|1500000I11Rik|AA960090|AI876556|AU020773|Atp5f1d|C85518	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-122357234-3	chr1	122356744	122357744	+	815.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	152099.0	NR_151524	102638832.0	Mm.112794	NR_151524	ENSMUSG00000099960	Gm28590	-	predicted gene 28590	ncRNA	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr8-56896533-3	chr8	56896034	56897034	+	815.211121	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	345400.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	9.5	0.0	3.0	0.0	0.0	3.5
Merged-chr1-85325496-1	chr1	85324996	85325996	+	815.200012	f1_balb.idr	Intergenic	Intergenic	-54930.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32683936-2	chr5	32683436	32684436	+	815.1999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205132, intron 11 of 11)	ORR1C2|LTR|ERVL-MaLR	62406.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	14.5	5.0	8.0	0.0	4.0	15.0
Merged-chr17-26946757-4	chr17	26946288	26947288	+	815.1845089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281491, intron 3 of 18)	CpG	1331.0	NR_037244	100526534.0		NR_037244	ENSMUSG00000093118	Mir3083	mir-3083|mmu-mir-3083	microRNA 3083	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116096903-3	chr9	116096401	116097401	+	815.1777950000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 5 of 6)	intron (NM_029575, intron 5 of 6)	78462.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109780742-4	chr8	109780238	109781238	+	815.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301211, intron 1 of 22)	intron (NM_001301211, intron 1 of 22)	2155.0	NM_001301211	11765.0	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123106023-2	chr8	123105523	123106523	+	815.166687	f1_balb.idr|f1_c57bl6.idr	TTS (NM_016738)	TTS (NM_016738)	1048.0	NR_106047	102465654.0		NR_106047	ENSMUSG00000098550	Mir7079	Gm27278|mmu-mir-7079	microRNA 7079	ncRNA	1.0	5.0	1.0	6.0	10.0	0.0
Merged-chr11-53868592-4	chr11	53868074	53869074	+	815.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011396, intron 7 of 9)	ID_B1|SINE|B4	-9318.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150901755-2	chr4	150901229	150902229	+	815.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_020569, intron 5 of 6)	B1_Mus2|SINE|Alu	8192.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45046516-2	chr2	45046016	45047016	+	815.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-23339.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-121130890-2	chr7	121130390	121131390	+	815.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_139310, intron 16 of 28)	(CAAA)n|Simple_repeat|Simple_repeat	47452.0	NM_139310	246190.0	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44270104-2	chr10	44269604	44270604	+	815.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358596, intron 1 of 6)	B3|SINE|B2	1765.0	NM_001358596	11793.0	Mm.22264	NM_053069	ENSMUSG00000038160	Atg5	2010107M05Rik|3110067M24Rik|AW319544|Apg5l|Atg5l|C88337|Paddy	autophagy related 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136967330-8	chr6	136966654	136967654	+	815.15625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	12631.0	NM_023898	78600.0	Mm.290622	NM_023898	ENSMUSG00000064330	Pde6h	A930033D18Rik|PDEgamma	phosphodiesterase 6H, cGMP-specific, cone, gamma	protein-coding	8.5	18.5	15.0	19.5	73.5	30.0
Merged-chr7-28547576-7	chr7	28547008	28548008	+	815.128601	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081115)	promoter-TSS (NM_001081115)	-254.0	NM_001081115	233038.0	Mm.224815	NM_001081115	ENSMUSG00000047586	Nccrp1	1190020J12Rik|Gm163|NCCRP-1	non-specific cytotoxic cell receptor protein 1 homolog (zebrafish)	protein-coding	5.0	3.5	0.5	1.5	2.0	2.0
Merged-chr11-115701207-2	chr11	115700707	115701707	+	815.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_008163, intron 1 of 5)	B3|SINE|B2	-1279.0	NM_001313936	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133609906-4	chr4	133609410	133610410	+	815.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017968, intron 7 of 7)	intron (NM_001017968, intron 7 of 7)	-7742.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	2.0	1.5	1.0	2.0	5.0	1.5
Merged-chr5-43846543-3	chr5	43846108	43847108	+	815.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-22201.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	11.0	45.0	42.5	17.5	35.5	28.5
Merged-chr3-144401413-3	chr3	144400894	144401894	+	815.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	168822.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14883716-3	chr8	14883233	14884233	+	815.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4803.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55887983-4	chr19	55887493	55888493	+	815.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-7328.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-64185585-3	chr14	64185088	64186088	+	815.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253715, intron 4 of 4)	intron (NM_001253715, intron 4 of 4)	81265.0	NM_028525	73382.0	Mm.481055	NM_028525	ENSMUSG00000021966	Prss52	1700049K14Rik|Tesp3	protease, serine 52	protein-coding	0.5	10.0	9.0	11.5	14.5	12.0
Merged-chr7-16880874-3	chr7	16880366	16881366	+	815.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081655, intron 1 of 3)	intron (NM_001081655, intron 1 of 3)	5549.0	NM_001081655	629378.0	Mm.491123	NM_001081655	ENSMUSG00000078794	Dact3	EG666671|naa-3	dishevelled-binding antagonist of beta-catenin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140636875-4	chr5	140636372	140637372	+	815.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308040, intron 1 of 12)	intron (NM_001308040, intron 1 of 12)	12159.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95626441-2	chr3	95625941	95626941	+	815.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001026212, intron 1 of 2)	B3|SINE|B2	1461.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	3.5	0.0	7.5	1.0	3.5	3.0
Merged-chr2-149264602-1	chr2	149264102	149265102	+	815.0	f1_balb.idr	Intergenic	L1Md_F|LINE|L1	-140647.0	NM_021405	58214.0	Mm.117117	NM_021405	ENSMUSG00000033156	Cst10	DD72	cystatin 10 (chondrocytes)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-113885750-2	chr14	113885250	113886250	+	815.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm-int|LTR|ERVL-MaLR	-946215.0	NR_045661	75822.0	Mm.410813	NR_045661	ENSMUSG00000115320	4930524C18Rik	-	RIKEN cDNA 4930524C18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-63886937-3	chr5	63886434	63887434	+	815.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 2 of 3)	intron (NM_029554, intron 2 of 3)	74439.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155067428-2	chr1	155066928	155067928	+	815.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151545, intron 3 of 6)	intron (NR_151545, intron 3 of 6)	15836.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84110734-3	chr10	84110218	84111218	+	815.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10021.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25367535-2	chr10	25367035	25368035	+	815.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 1 of 16)	ID_B1|SINE|B4	7737.0	NM_001358751	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	3.0	2.0	4.0	0.0	6.0	5.0
Merged-chr10-54529853-2	chr10	54529353	54530353	+	815.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY3-int|LTR|ERVK	453931.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100865602-2	chr13	100865102	100866102	+	815.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32175.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118108286-2	chr11	118107786	118108786	+	815.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167746, intron 17 of 80)	intron (NM_001167746, intron 17 of 80)	20933.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-30686765-3	chr15	30686263	30687263	+	815.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 9 of 21)	intron (NM_001355502, intron 9 of 21)	-352363.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46331452-2	chr19	46330952	46331952	+	815.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164295, exon 6 of 9)	exon (NM_001164295, exon 6 of 9)	3268.0	NM_133694	68431.0	Mm.19973	NM_133694	ENSMUSG00000025226	Fbxl15	0710008C12Rik|Fbxo37	F-box and leucine-rich repeat protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-48120743-2	chr14	48120281	48121281	+	815.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_033602)	promoter-TSS (NM_033602)	-88.0	NM_033602	93834.0	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	0.0	0.0	0.0	0.0	4.0	1.0
Merged-chr14-31175164-2	chr14	31174664	31175664	+	815.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022656, intron 16 of 20)	intron (NM_022656, intron 16 of 20)	-6523.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-58762189-2	chr7	58761689	58762689	+	815.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009728, intron 2 of 20)	intron (NM_009728, intron 2 of 20)	103987.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135794724-3	chr5	135794273	135795273	+	815.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16124.0	NM_008617	17448.0	Mm.297096	NM_008617	ENSMUSG00000019179	Mdh2	MDH|Mdh-2|Mor-1|Mor1	malate dehydrogenase 2, NAD (mitochondrial)	protein-coding	0.0	3.5	1.0	4.0	0.0	0.5
Merged-chr19-5446545-2	chr19	5446045	5447045	+	815.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-1153.0	NM_010235	14283.0	Mm.6215	NM_010235	ENSMUSG00000024912	Fosl1	AW538199|Fra1|fra-1	fos-like antigen 1	protein-coding	0.0	0.0	1.5	0.0	3.5	2.0
Merged-chr10-26785718-2	chr10	26785218	26786218	+	815.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	13206.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90264289-2	chr3	90263789	90264789	+	815.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356483)	promoter-TSS (NM_001356483)	-946.0	NM_001356483	229541.0	Mm.30571	NM_201407	ENSMUSG00000042404	Dennd4b	-	DENN/MADD domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22360504-2	chr16	22360004	22361004	+	815.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC4|LINE|L1	65516.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	1.5	2.0	0.0	2.5	3.0	0.5
Merged-chr15-97379521-2	chr15	97379021	97380021	+	815.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 5 of 5)	intron (NM_172293, intron 5 of 5)	-132234.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5698838-1	chr2	5698338	5699338	+	815.0	f0_balb.idr	intron (NM_001290374, intron 1 of 9)	MTEb|LTR|ERVL-MaLR	15924.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	18.5	21.5	16.0	23.5	31.0	29.5
Merged-chr14-31571207-2	chr14	31570707	31571707	+	815.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009937, intron 1 of 16)	MER5A|DNA|hAT-Charlie	6176.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100849573-4	chr12	100849050	100850050	+	815.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145448, intron 7 of 12)	intron (NM_145448, intron 7 of 12)	49974.0	NM_001177674	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139235800-2	chr7	139235292	139236292	+	815.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027164, intron 8 of 10)	intron (NM_027164, intron 8 of 10)	-12690.0	NM_001033206	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	10.5	19.0	8.0	0.0	5.5	19.0
Merged-chr4-114973810-2	chr4	114973310	114974310	+	815.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025647, intron 1 of 5)	RSINE1|SINE|B4	13418.0	NM_025647	66588.0	Mm.294159	NM_025647	ENSMUSG00000028719	Cmpk1	0610011D08Rik|CK|Cmpk|UMP-CMPk	cytidine monophosphate (UMP-CMP) kinase 1	protein-coding	0.0	8.5	1.0	0.0	0.0	0.5
Merged-chr11-118243229-2	chr11	118242729	118243729	+	815.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	B3|SINE|B2	5363.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59332503-6	chr4	59331984	59332984	+	815.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 13 of 16)	intron (NM_001163288, intron 13 of 16)	72433.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	9.0	36.0	27.5	18.5	76.5	44.0
Merged-chr2-38339858-2	chr2	38339358	38340358	+	815.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290646, intron 1 of 4)	CpG	577.0	NM_001290646	16870.0	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35111744-2	chr2	35111244	35112244	+	815.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_012018, exon 2 of 44)	exon (NM_012018, exon 2 of 44)	2252.0	NM_012018	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31455654-3	chr6	31455153	31456153	+	815.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013791, intron 8 of 17)	intron (NM_013791, intron 8 of 17)	56825.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80246756-2	chr10	80246256	80247256	+	815.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-2696.0	NM_029272	75406.0	Mm.28712	NM_029272	ENSMUSG00000020153	Ndufs7	1010001M04Rik	NADH dehydrogenase (ubiquinone) Fe-S protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75776306-2	chr2	75775806	75776806	+	815.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55871.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-79661592-4	chr17	79661147	79662147	+	815.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201361, intron 5 of 10)	intron (NM_201361, intron 5 of 10)	46747.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-114846186-2	chr13	114845686	114846686	+	815.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008396, intron 25 of 29)	intron (NM_008396, intron 25 of 29)	27949.0	NM_001113374	17434.0	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45123295-4	chr7	45122795	45123795	+	814.983337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_000004)	promoter-TSS (NR_000004)	-184.0	NR_000004	27212.0		NR_000004	ENSMUSG00000064767	Snord35b	Rnu35b|U35	small nucleolar RNA, C/D box 35B	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22010869-2	chr16	22010369	22011369	+	814.983337	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357424, intron 1 of 15)	B1_Mus2|SINE|Alu	1385.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34773584-4	chr5	34773092	34774092	+	814.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010414, intron 1 of 66)	RMER1B|Other|Other	11852.0	NM_010414	15194.0	Mm.209071	NM_010414	ENSMUSG00000029104	Htt	AI256365|C430023I11Rik|Hd|Hdh|IT15	huntingtin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-104231396-3	chr7	104230895	104231895	+	814.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013616, intron 5 of 7)	intron (NM_001013616, intron 5 of 7)	12600.0	NM_001013616	94088.0	Mm.274843	NM_001013616	ENSMUSG00000072244	Trim6	C430046K18Rik|D7Ertd684e	tripartite motif-containing 6	protein-coding	2.0	0.0	0.0	0.0	0.0	2.5
Merged-chr13-37432914-3	chr13	37432438	37433438	+	814.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87593.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr12-71808248-4	chr12	71807728	71808728	+	814.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22840.0	NM_026102	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42461281-3	chr19	42460811	42461811	+	814.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29523.0	NM_001356589	72832.0	Mm.313558	NM_145123	ENSMUSG00000042401	Crtac1	2810454P21Rik|AW047536|Crtac1B|Lotus	cartilage acidic protein 1	protein-coding	9.0	4.0	12.5	9.0	5.0	14.0
Merged-chr4-3083389-2	chr4	3082889	3083889	+	814.916687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88694.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104781717-4	chr3	104781166	104782166	+	814.895813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027982, intron 1 of 9)	CpG	610.0	NM_027982	71887.0	Mm.379204	NM_027982	ENSMUSG00000002228	Ppm1j	2310008J22Rik|PP2Czeta|Ppp2cz	protein phosphatase 1J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-133021328-6	chr2	133020861	133021861	+	814.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75325.0	NM_198029	241639.0	Mm.209784	NM_198029	ENSMUSG00000027356	Fermt1	5830467P10Rik|Kindlin-1	fermitin family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9499613-3	chr3	9499112	9500112	+	814.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133218, intron 2 of 8)	L1MC5a|LINE|L1	96534.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167064220-2	chr2	167063730	167064730	+	814.875	f1_balb.idr|f1_c57bl6.idr	intron (NR_138563, intron 2 of 4)	intron (NR_138563, intron 2 of 4)	-1063.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102498693-8	chr12	102498131	102499131	+	814.866638	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001199004)	TTS (NM_001199004)	28721.0	NM_013747	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	21.5	45.5	42.5	16.5	108.5	77.0
Merged-chr4-53034556-3	chr4	53034100	53035100	+	814.849976	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 49 of 49)	RLTR20A3_MM|LTR|ERVK	22720.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	3.0	1.0
Merged-chr12-16874486-6	chr12	16873984	16874984	+	814.8388669999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-20494.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	37.0	51.5	54.0	37.0	85.0	61.0
Merged-chr6-140682764-3	chr6	140682338	140683338	+	814.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55953.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23807108-2	chr18	23806608	23807608	+	814.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	3138.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	33.5	75.5	47.5	34.0	78.0	46.0
Merged-chr3-55354917-4	chr3	55354378	55355378	+	814.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357475, intron 3 of 16)	intron (NM_001357475, intron 3 of 16)	-106850.0	NM_001195539	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-41275021-3	chr12	41274516	41275516	+	814.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	211041.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-15278434-2	chr9	15277934	15278934	+	814.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_144933, intron 1 of 11)	intron (NM_144933, intron 1 of 11)	1433.0	NM_144933	234959.0	Mm.44151	NM_144933	ENSMUSG00000031935	Med17	77kDa|C330002H14Rik|Crsp6|Trap80	mediator complex subunit 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166974290-3	chr2	166973828	166974828	+	814.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109905, intron 1 of 11)	intron (NM_001109905, intron 1 of 11)	-9611.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122988009-4	chr10	122987540	122988540	+	814.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2316.0	NR_029527	387251.0		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126481994-3	chr8	126481521	126482521	+	814.8095089999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6956.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168579739-3	chr2	168579241	168580241	+	814.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291169, intron 1 of 10)	intron (NM_001291169, intron 1 of 10)	10624.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	1.0	7.0	6.0	3.0	3.0	5.0
Merged-chr14-54382402-3	chr14	54381902	54382902	+	814.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	MLTR14|LTR|ERV1	21561.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	89.5	170.5	128.5	98.0	313.5	192.5
Merged-chr6-72103554-3	chr6	72103076	72104076	+	814.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	5968.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99564800-6	chr12	99564285	99565285	+	814.777771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136760, intron 1 of 3)	intron (NR_136760, intron 1 of 3)	944.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71047377-3	chr2	71046853	71047853	+	814.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 1 of 9)	intron (NM_145524, intron 1 of 9)	8253.0	NM_145524	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95084152-3	chr4	95083654	95084654	+	814.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-31932.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	7.0	10.0	11.5	11.0	13.5	15.5
Merged-chr11-119059047-5	chr11	119058700	119059700	+	814.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18287.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43916142-4	chr5	43915657	43916657	+	814.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47348.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.0	2.5	1.0	3.0	5.0	3.0
Merged-chr5-120519801-2	chr5	120519301	120520301	+	814.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 3 of 13)	intron (NM_001177595, intron 3 of 13)	8609.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117396628-4	chr5	117396113	117397113	+	814.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7590.0	NM_028128	72151.0	Mm.27997	NM_028128	ENSMUSG00000029363	Rfc5	2610020K06Rik|2610209F07Rik|36.5kDa|36kDa|Recc5	replication factor C (activator 1) 5	protein-coding	4.0	15.5	7.0	3.5	27.0	8.5
Merged-chr11-118166409-2	chr11	118165909	118166909	+	814.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 12 of 12)	intron (NM_001112700, intron 12 of 12)	-37190.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124739255-2	chr6	124738755	124739755	+	814.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077705)	promoter-TSS (NM_001077705)	-546.0	NM_001077705	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126695065-4	chr8	126694586	126695586	+	814.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101650.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	7.0	9.5	20.5	9.0	22.0	8.5
Merged-chr3-33956443-4	chr3	33955907	33956907	+	814.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63672.0	NM_008053	14359.0	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117989621-4	chr11	117989149	117990149	+	814.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151726, intron 1 of 9)	intron (NR_151726, intron 1 of 9)	2792.0	NR_151726	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62359551-7	chr4	62358962	62359962	+	814.738098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355385, intron 1 of 27)	intron (NM_001355385, intron 1 of 27)	1134.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36779755-3	chr16	36779254	36780254	+	814.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145899, intron 3 of 6)	intron (NM_001145899, intron 3 of 6)	5208.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116108168-4	chr6	116107651	116108651	+	814.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	85223.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106822160-3	chr1	106821639	106822639	+	814.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25414.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	2.5	0.0	0.0	0.0	0.0	0.0
Merged-chr6-106458879-1	chr6	106458379	106459379	+	814.666687	f0_balb.idr	intron (NM_001109749, intron 8 of 25)	intron (NM_001109749, intron 8 of 25)	290158.0	NM_008370	16192.0	Mm.3448	NM_008370	ENSMUSG00000005364	Il5ra	CD125|CDw125|Il5r	interleukin 5 receptor, alpha	protein-coding	4.0	13.5	6.0	15.0	56.5	14.0
Merged-chr16-85050626-4	chr16	85050166	85051166	+	814.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 6 of 15)	intron (NM_001198825, intron 6 of 15)	78455.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-166171953-3	chr1	166171489	166172489	+	814.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41768.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13442477-3	chr9	13441986	13442986	+	814.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11125.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	0.0	1.5	3.5	7.0	3.5	11.5
Merged-chr8-69887396-2	chr8	69886896	69887896	+	814.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026818)	promoter-TSS (NM_026818)	-4.0	NM_026818	68709.0	Mm.334584	NM_026818	ENSMUSG00000044006	Cilp2	1110031K21Rik|AA407300|CLIP-2	cartilage intermediate layer protein 2	protein-coding	1.0	0.0	1.5	0.0	6.0	0.0
Merged-chr2-166567594-2	chr2	166567094	166568094	+	814.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NR_152154)	TTS (NR_152154)	3072.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21148372-2	chr9	21147872	21148872	+	814.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_016742, intron 1 of 7)	intron (NM_016742, intron 1 of 7)	1534.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-18240510-2	chr14	18240062	18241062	+	814.650024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1456.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-43523495-4	chr18	43522992	43523992	+	814.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85206.0	NM_001291455	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39650307-4	chr1	39649812	39650812	+	814.645813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170597, intron 1 of 3)	intron (NM_170597, intron 1 of 3)	870.0	NM_170597	263764.0	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97079327-4	chr7	97078811	97079811	+	814.645813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2440.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	15.0	2.0	5.0	16.5	2.5	4.5
Merged-chr7-27543647-2	chr7	27543147	27544147	+	814.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317355, intron 2 of 13)	intron (NM_001317355, intron 2 of 13)	9571.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101322554-2	chr7	101322054	101323054	+	814.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_019990, intron 2 of 6)	intron (NM_019990, intron 2 of 6)	1441.0	NM_019990	56018.0	Mm.28896	NM_019990	ENSMUSG00000030688	Stard10	AV048538|CGI-52|NY-C0-28|PC-TP2|PCTP2|Pctpl|Sdccag28|SdccagG28|TISP-81	START domain containing 10	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr1-164080121-3	chr1	164079627	164080627	+	814.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011346, exon 9 of 9)	3' UTR (NM_011346, exon 9 of 9)	18051.0	NM_011346	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-113800839-4	chr9	113800352	113801352	+	814.604126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286603, intron 1 of 4)	intron (NM_001286603, intron 1 of 4)	7522.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	26.5	42.0	33.5	13.0	43.0	49.5
Merged-chr17-5596690-4	chr17	5596210	5597210	+	814.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	104110.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75510123-5	chr11	75509683	75510683	+	814.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029938)	promoter-TSS (NM_001029938)	89.0	NM_001029938	280408.0	Mm.41416	NM_001029938	ENSMUSG00000038195	Rilp	AI835553|Gm857	Rab interacting lysosomal protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141823148-4	chr4	141822630	141823630	+	814.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007919, intron 2 of 7)	MTD|LTR|ERVL-MaLR	2875.0	NM_007919	13706.0	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	17.0	55.0	29.0	0.0	2.0	3.0
Merged-chr11-107786738-3	chr11	107786233	107787233	+	814.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019431, intron 1 of 3)	intron (NM_019431, intron 1 of 3)	7961.0	NM_019431	54377.0	Mm.103724	NM_019431	ENSMUSG00000020723	Cacng4	AI413107|AW491861	calcium channel, voltage-dependent, gamma subunit 4	protein-coding	0.0	0.0	0.0	0.0	10.0	0.0
Merged-chr19-55834980-3	chr19	55834466	55835466	+	814.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-60355.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.5	3.0	3.0	0.5	0.0	5.5
Merged-chr6-88306549-3	chr6	88306043	88307043	+	814.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149744, intron 3 of 5)	intron (NR_149744, intron 3 of 5)	84275.0	NM_019964	56691.0	Mm.272871	NM_019964	ENSMUSG00000048206	Dnajb8	1700016F14Rik|1700031F10Rik|AI326313|mDj6	DnaJ heat shock protein family (Hsp40) member B8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117825067-4	chr10	117824555	117825555	+	814.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	20919.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	3.0	9.5	5.0	17.0	19.5	18.0
Merged-chr4-150904233-2	chr4	150903733	150904733	+	814.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020569, intron 4 of 6)	intron (NM_020569, intron 4 of 6)	5688.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81650205-2	chr10	81649705	81650705	+	814.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142963, intron 1 of 3)	B2_Mm2|SINE|B2	1136.0	NM_001142963	100233208.0	Mm.327168	NM_001142963	ENSMUSG00000096856	Gm10778	-	predicted gene 10778	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-127273147-2	chr1	127272647	127273647	+	814.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 2 of 17)	intron (NM_145128, intron 2 of 17)	68161.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19091531-2	chr7	19091031	19092031	+	814.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_032418, intron 10 of 14)	intron (NM_032418, intron 10 of 14)	-3013.0	NM_011383	20475.0	Mm.3410	NM_011383	ENSMUSG00000040841	Six5	Dmahp|MDMAHP|TrexBF	sine oculis-related homeobox 5	protein-coding	1.0	0.0	1.5	0.0	0.0	2.0
Merged-chr19-40626870-2	chr19	40626370	40627370	+	814.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	14504.0	NM_001304721	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.0	1.0	1.0	3.5	7.5	0.5
Merged-chr16-38523723-2	chr16	38523223	38524223	+	814.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1060.0	NM_024273	76916.0	Mm.132231	NM_024273	ENSMUSG00000002846	Timmdc1	2810021C21Rik|4930455C21Rik|AV135763	translocase of inner mitochondrial membrane domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-46548356-2	chr7	46547856	46548856	+	814.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013789, intron 9 of 10)	B4A|SINE|B4	91451.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96621894-4	chr15	96621403	96622403	+	814.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166456, intron 2 of 15)	intron (NM_001166456, intron 2 of 15)	20059.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81141705-2	chr10	81141205	81142205	+	814.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010731, intron 1 of 2)	intron (NM_010731, intron 1 of 2)	5434.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63536283-2	chr4	63535783	63536783	+	814.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER92B|LTR|ERV1	-8482.0	NM_024173	66290.0	Mm.371615	NM_024173	ENSMUSG00000039105	Atp6v1g1	1810024D14Rik|AA960677|ATP6J|Atp6g1|VAG1|Vma10	ATPase, H+ transporting, lysosomal V1 subunit G1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-113688871-2	chr7	113688371	113689371	+	814.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77127.0	NM_145584	233744.0	Mm.334160	NM_145584	ENSMUSG00000038156	Spon1	AI666765|AW455831|BC020531|D330035F22Rik|FSP	spondin 1, (f-spondin) extracellular matrix protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138454065-2	chr4	138453618	138454618	+	814.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1030.0	NM_025451	66259.0	Mm.41603	NM_025451	ENSMUSG00000046447	Camk2n1	1810006K23Rik|AI848599|AI891706	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding	5.5	0.0	0.0	0.0	0.0	1.5
Merged-chr3-69195948-2	chr3	69195452	69196452	+	814.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E1|LTR|ERVL-MaLR	-26467.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	7.5	12.0	1.5	4.0	5.0	10.5
Merged-chr11-120307120-2	chr11	120306620	120307620	+	814.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40293.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	0.0	0.0	0.0	0.0	1.5	0.0
Merged-chr11-76033981-4	chr11	76033483	76034483	+	814.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6201.0	NM_029658	76566.0	Mm.34131	NM_029658	ENSMUSG00000020846	Rflnb	1500005K14Rik|Fam101b|RefilinB|cfm	refilin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64959652-4	chr5	64959147	64960147	+	814.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359180, intron 1 of 1)	intron (NM_001359180, intron 1 of 1)	449.0	NM_001359180	21899.0	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	17.5	63.0	29.5	8.5	26.0	21.0
Merged-chr3-66986953-2	chr3	66986453	66987453	+	814.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356273, intron 1 of 9)	intron (NM_001356273, intron 1 of 9)	986.0	NM_001356273	66880.0	Mm.316418	NM_025822	ENSMUSG00000034544	Rsrc1	1200013F24Rik|SRrp53	arginine/serine-rich coiled-coil 1	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr2-31767295-2	chr2	31766795	31767795	+	814.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001283045, intron 1 of 10)	(CTGTG)n|Simple_repeat|Simple_repeat	7122.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80388828-2	chr10	80388328	80389328	+	814.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1177.0	NM_198615	237400.0	Mm.268389	NM_198615	ENSMUSG00000048696	Mex3d	BC059858|Rkhd1	mex3 RNA binding family member D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36148597-2	chr15	36148097	36149097	+	814.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-8197.0	NM_001195748	626596.0	Mm.321798	NM_001195748	ENSMUSG00000037627	Rgs22	-	regulator of G-protein signalling 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86694690-3	chr6	86694200	86695200	+	814.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011818, intron 13 of 13)	intron (NM_011818, intron 13 of 13)	-10209.0	NM_025665	66618.0	Mm.182650	NM_025665	ENSMUSG00000001158	Snrnp27	2610209M04Rik|AI449063|AU022368|Ry1	small nuclear ribonucleoprotein 27 (U4/U6.U5)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-174018811-2	chr2	174018311	174019311	+	814.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58240.0	NM_172675	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	0.0	5.0	3.5	0.0	5.0	5.5
Merged-chr8-70621296-2	chr8	70620798	70621798	+	814.5	f0_balb.idr|f1_balb.idr	TTS (NM_153074)	TTS (NM_153074)	4454.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	33.0	22.5	26.5	42.5	35.0	47.5
Merged-chr14-18235583-2	chr14	18235083	18236083	+	814.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011584, intron 1 of 7)	intron (NM_011584, intron 1 of 7)	3523.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	14.0	10.0	10.5	5.5	13.0	15.5
Merged-chr15-77932313-2	chr15	77931813	77932813	+	814.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3319.0	NM_019913	56551.0	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-103341414-1	chr4	103340914	103341914	+	814.5	f0_balb.idr	intron (NM_025909, intron 7 of 8)	intron (NM_025909, intron 7 of 8)	27568.0	NM_025909	67013.0	Mm.30021	NM_025909	ENSMUSG00000035069	Oma1	2010001O09Rik|MPRP-1|ZMPOMA1	OMA1 zinc metallopeptidase	protein-coding	11.0	21.0	14.5	4.5	49.0	30.5
Merged-chr4-141995301-2	chr4	141994801	141995801	+	814.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 2 of 31)	intron (NM_177868, intron 2 of 31)	12309.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59106099-1	chr15	59105599	59106599	+	814.5	f0_balb.idr	Intergenic	Intergenic	-24073.0	NM_144800	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0.0	0.5	2.0	1.0	0.0	2.5
Merged-chr17-55970684-2	chr17	55970184	55971184	+	814.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001159523, exon 1 of 7)	5' UTR (NM_001159523, exon 1 of 7)	202.0	NM_009168	20420.0	Mm.20908	NM_009168	ENSMUSG00000039154	Shd	AI413439	src homology 2 domain-containing transforming protein D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106882923-4	chr1	106882438	106883438	+	814.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001360853, exon 8 of 8)	3' UTR (NM_001360853, exon 8 of 8)	21763.0	NM_009257	20724.0	Mm.268618	NM_009257	ENSMUSG00000067006	Serpinb5	1110036M19Rik|AI462524|AI646751|Maspin|PI-5|Spi7|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70263735-2	chr9	70263235	70264235	+	814.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	56385.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88755349-4	chr8	88754855	88755855	+	814.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58327.0	NM_001128171	74256.0	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	7.5	6.0	4.5	5.5	0.5	2.0
Merged-chr1-67044146-3	chr1	67043649	67044649	+	814.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5277.0	NM_021295	14768.0	Mm.20522	NM_021295	ENSMUSG00000026000	Lancl1	AW124738|Gpr69|Gpr69a|p40	LanC (bacterial lantibiotic synthetase component C)-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-80627014-4	chr1	80626525	80627525	+	814.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 3 of 55)	intron (NM_175291, intron 3 of 55)	38327.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99163010-4	chr9	99162501	99163501	+	814.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	-22790.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-45337140-4	chr8	45336628	45337628	+	814.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153535, exon 14 of 14)	3' UTR (NM_153535, exon 14 of 14)	-3932.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136468580-4	chr6	136468092	136469092	+	814.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50259.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	4.5	1.5	6.0	12.0	0.0	10.5
Merged-chr18-75459579-3	chr18	75459031	75460031	+	814.361145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 10 of 11)	intron (NM_201354, intron 10 of 11)	-55114.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29853313-2	chr6	29852813	29853813	+	814.349976	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347084)	promoter-TSS (NM_001347084)	-428.0	NM_001347084	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-4821317-4	chr15	4820786	4821786	+	814.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-77451.0	NM_001166066	223825.0	Mm.159281	NM_001166066	ENSMUSG00000022155	Mroh2b	4930455B06Rik|Heatr7b2|SPIF	maestro heat-like repeat family member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122618108-4	chr8	122617567	122618567	+	814.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4308.0	NR_105821	102466643.0		NR_105821	ENSMUSG00000098500	Mir6396	Gm27938|mmu-mir-6396	microRNA 6396	ncRNA	10.5	4.5	0.5	0.0	2.0	0.5
Merged-chr7-127303227-3	chr7	127302731	127303731	+	814.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253873, intron 7 of 30)	ORR1G|LTR|ERVL-MaLR	6971.0	NM_001253874	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160617433-3	chr2	160616908	160617908	+	814.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28489.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-167231297-3	chr1	167230802	167231802	+	814.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030724, intron 4 of 6)	MIRc|SINE|MIR	53825.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104293517-1	chr8	104293017	104294017	+	814.333313	f0_balb.idr	promoter-TSS (NM_027022)	promoter-TSS (NM_027022)	-336.0	NM_027022	73381.0	Mm.272746	NM_027022	ENSMUSG00000074127	Cmtm2a	1700001K04Rik|1700041N15Rik|1700063K20Rik|AI449770|ARR19|C32|CKLF3|CKLF4|CKLF5|Cklf|Cklf1|Cklfsf2-1b|Cklfsf2a|UCK-1	CKLF-like MARVEL transmembrane domain containing 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4154436-3	chr12	4153955	4154955	+	814.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 2 of 21)	intron (NM_001159537, intron 2 of 21)	20302.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-100160000-4	chr10	100159489	100160489	+	814.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	144168.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46467767-3	chr18	46467266	46468266	+	814.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1950.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44288299-2	chr9	44287799	44288799	+	814.299988	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138955)	promoter-TSS (NM_138955)	-55.0	NM_138955	192663.0	Mm.101876	NM_138955	ENSMUSG00000032131	Abcg4	6430517O04Rik	ATP binding cassette subfamily G member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181241074-4	chr2	181240589	181241589	+	814.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183162, intron 1 of 18)	intron (NM_183162, intron 1 of 18)	938.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90266030-4	chr9	90265530	90266530	+	814.291687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	4739.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80366687-3	chr12	80366203	80367203	+	814.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177267, intron 6 of 8)	L2a|LINE|L2	24974.0	NR_037207	100526530.0		NR_037207	ENSMUSG00000105972	Mir1843a	Mir1843|mir-1843a|mmu-mir-1843|mmu-mir-1843a	microRNA 1843a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117225252-2	chr10	117224752	117225752	+	814.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026570)	promoter-TSS (NM_026570)	-745.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27581065-2	chr7	27580598	27581598	+	814.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175107, exon 10 of 10)	3' UTR (NM_175107, exon 10 of 10)	-10454.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44374970-2	chr7	44374470	44375470	+	814.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027049)	promoter-TSS (NM_027049)	60.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46520258-2	chr19	46519758	46520758	+	814.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18610.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120486596-4	chr8	120486125	120487125	+	814.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2241.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100732049-4	chr12	100731551	100732551	+	814.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6931.0	NM_153587	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	12.5	15.0	9.5	2.5	17.5	13.5
Merged-chr17-3077917-2	chr17	3077416	3078416	+	814.25	f0_balb.idr|f1_balb.idr	intron (NR_003519, intron 4 of 7)	intron (NR_003519, intron 4 of 7)	6267.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140620225-2	chr5	140619725	140620725	+	814.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175274)	TTS (NM_175274)	12884.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100490632-4	chr13	100490119	100491119	+	814.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360706, intron 1 of 16)	intron (NM_001360706, intron 1 of 16)	1775.0	NR_153794	23894.0	Mm.272533	NM_022011	ENSMUSG00000021639	Gtf2h2	44kDa|BTF2 p44|BTF2-p44|Btf2p44|p44	general transcription factor II H, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114294131-3	chr7	114293632	114294632	+	814.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18016.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	2.5	1.5	4.5	0.5	25.0	10.0
Merged-chr17-40877797-3	chr17	40877303	40878303	+	814.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027834, intron 1 of 1)	intron (NM_027834, intron 1 of 1)	2755.0	NM_027834	71583.0	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding	44.0	35.5	23.5	17.0	7.5	5.5
Merged-chr15-66098455-3	chr15	66097949	66098949	+	814.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152923, intron 1 of 14)	L1M4|LINE|L1	-121645.0	NM_001145096	654498.0	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-65113973-5	chr14	65113404	65114404	+	814.213318	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-15798.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75794463-4	chr7	75793940	75794940	+	814.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14-int|LTR|ERV1	-53898.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	2.0	1.5	13.5	0.0	1.5	11.0
Merged-chr13-37946979-4	chr13	37946475	37947475	+	814.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033615, exon 9 of 10)	non-coding (NR_033615, exon 9 of 10)	47233.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68443012-3	chr10	68442548	68443548	+	814.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028491, intron 5 of 7)	intron (NM_028491, intron 5 of 7)	98827.0	NM_028491	73287.0	Mm.141830	NM_028491	ENSMUSG00000019945	Cabcoco1	1700040L02Rik	ciliary associated calcium binding coiled-coil 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4910117-2	chr16	4909617	4910617	+	814.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 2 of 17)	intron (NM_001357062, intron 2 of 17)	24017.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173765999-2	chr1	173765497	173766497	+	814.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_008329, intron 1 of 8)	B1_Mur2|SINE|Alu	922.0	NM_008329	15951.0	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	33.5	117.0	54.5	5.0	1.0	10.0
Merged-chr13-23772772-3	chr13	23772276	23773276	+	814.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9108.0	NM_030609	80838.0	Mm.480242	NM_030609	ENSMUSG00000049539	Hist1h1a	H1.1|H1a|H1f1|H1var3	histone cluster 1, H1a	protein-coding	0.0	6.5	8.0	0.0	25.0	15.0
Merged-chr6-148443091-2	chr6	148442591	148443591	+	814.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_198967, intron 1 of 19)	intron (NM_198967, intron 1 of 19)	1261.0	NM_198967	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170901332-2	chr1	170900832	170901832	+	814.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	11609.0	NM_001029984	435653.0	Mm.337931	NM_001029984	ENSMUSG00000070524	Fcrlb	FREB-2|FREB2|FcRL2|Fcrlm2|Fcry|mFCRL2	Fc receptor-like B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-129653904-2	chr7	129653404	129654404	+	814.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62041.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19631625-2	chr7	19631125	19632125	+	814.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019649)	TTS (NM_019649)	-2187.0	NM_009046	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165878800-2	chr2	165878300	165879300	+	814.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291158)	promoter-TSS (NM_001291158)	-363.0	NM_001291158	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	23.5	85.5	77.5	29.5	89.5	52.5
Merged-chr16-8739750-4	chr16	8739267	8740267	+	814.145874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1425.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-66491976-3	chr8	66491463	66492463	+	814.122253	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5433.0	NM_001357208	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-23268303-3	chr1	23267808	23268808	+	814.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3961.0	NR_029533	387225.0		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-101102885-3	chr12	101102397	101103397	+	814.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-19195.0	NM_001160214	68734.0	Mm.87077	NM_211355	ENSMUSG00000041846	Ppp4r3a	1110034C04Rik|BC064465|Smek1|mKIAA2010	protein phosphatase 4 regulatory subunit 3A	protein-coding	1.0	0.0	1.5	2.0	0.0	0.5
Merged-chr9-64143392-4	chr9	64142923	64143923	+	814.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026507, intron 17 of 18)	MTE2a|LTR|ERVL-MaLR	26276.0	NM_145835	235435.0	Mm.436581	NM_145835	ENSMUSG00000032401	Lctl	E130104I05Rik|KLPH	lactase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88148509-4	chr3	88147973	88148973	+	814.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	6101.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21908668-4	chr16	21908207	21909207	+	814.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172821, exon 7 of 13)	exon (NM_172821, exon 7 of 13)	16738.0	NM_172821	71751.0	Mm.420837	NM_172821	ENSMUSG00000033618	Map3k13	C130026N12Rik|LZK	mitogen-activated protein kinase kinase kinase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70605311-3	chr11	70604807	70605807	+	814.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 12 of 30)	intron (NM_016713, intron 12 of 30)	-10587.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-92269214-4	chr6	92268719	92269719	+	814.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24569.0	NM_009426	22044.0	Mm.1363	NM_009426	ENSMUSG00000005892	Trh	Pro-TRH|Trf	thyrotropin releasing hormone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-4731077-3	chr15	4730571	4731571	+	814.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016704, intron 1 of 15)	Lx7|LINE|L1	3861.0	NM_016704	12274.0	Mm.20247	NM_016704	ENSMUSG00000022181	C6	AW111623	complement component 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62244442-3	chr9	62243940	62244940	+	814.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040769)	promoter-TSS (NR_040769)	-340.0	NR_040769	330958.0	Mm.411888	NR_040769	ENSMUSG00000111232	A730043L09Rik	A730043L09	RIKEN cDNA A730043L09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-186508582-3	chr1	186508077	186509077	+	814.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50104.0	NR_131124	320449.0	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77713947-3	chr10	77713433	77714433	+	814.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287074, intron 1 of 11)	intron (NM_001287074, intron 1 of 11)	-1874.0	NM_001205035	100502921.0	Mm.486156	NM_001205035	ENSMUSG00000094146	Gm10142	-	predicted gene 10142	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94909087-4	chr8	94908580	94909580	+	814.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033533, intron 4 of 8)	intron (NM_001033533, intron 4 of 8)	9018.0	NM_001033533	234582.0	Mm.277871	NM_001033533	ENSMUSG00000063605	Ccdc102a	BC027663|Gm586	coiled-coil domain containing 102A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33988556-4	chr16	33988052	33989052	+	814.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 55 of 59)	intron (NM_177357, intron 55 of 59)	-21514.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26503147-4	chr2	26502655	26503655	+	814.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132655)	promoter-TSS (NR_132655)	667.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-63922643-5	chr15	63922244	63923244	+	814.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_029414, intron 7 of 10)	intron (NR_029414, intron 7 of 10)	8283.0	NR_029414	74460.0	Mm.390801	NR_029414	ENSMUSG00000100127	Gsdmcl-ps	4933426G20Rik	gasdermin C-like, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30617464-3	chr14	30616954	30617954	+	814.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	-7144.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.0	7.5	7.0	4.0	1.5	0.5
Merged-chr5-118028362-2	chr5	118027862	118028862	+	814.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151582, intron 1 of 7)	CpG	619.0	NM_021344	57816.0	Mm.273285	NM_021344	ENSMUSG00000029359	Tesc	1010001A17Rik|2410011K10Rik|TE-1	tescalcin	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr6-120567283-1	chr6	120566783	120567783	+	814.0	f0_balb.idr	intron (NR_045733, intron 2 of 3)	intron (NR_045733, intron 2 of 3)	12487.0	NR_045733	73505.0	Mm.416867	NR_045733		1700072O05Rik	-	RIKEN cDNA 1700072O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21882207-2	chr10	21881707	21882707	+	814.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161845)	promoter-TSS (NM_001161845)	23.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141994768-1	chr4	141994268	141995268	+	814.0	f0_balb.idr	intron (NM_177868, intron 2 of 31)	intron (NM_177868, intron 2 of 31)	11776.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117363333-2	chr8	117362833	117363833	+	814.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	14163.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118468301-3	chr7	118467786	118468786	+	814.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20064.0	NM_001362179	110058.0	Mm.156558	NM_138649	ENSMUSG00000058420	Syt17	Bk|sytXVII	synaptotagmin XVII	protein-coding	12.5	21.5	11.0	13.5	8.5	6.0
Merged-chr10-121598507-2	chr10	121598003	121599003	+	814.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359618, intron 22 of 24)	intron (NM_001359618, intron 22 of 24)	-11709.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	2.5	11.0	3.5	0.0	0.0	0.0
Merged-chr10-80041695-1	chr10	80041195	80042195	+	814.0	f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	B2_Mm1a|SINE|B2	-2036.0	NM_025554	66420.0	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53076426-3	chr4	53076010	53077010	+	814.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 20 of 49)	MTD|LTR|ERVL-MaLR	64630.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48411532-2	chr17	48411032	48412032	+	814.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207219, intron 3 of 5)	intron (NM_207219, intron 3 of 5)	1082.0	NM_001357904	106821.0	Mm.203943	NM_207219	ENSMUSG00000040771	Oard1	AI314976|AW558560	O-acyl-ADP-ribose deacylase 1	protein-coding	0.0	0.0	3.0	0.0	0.5	3.0
Merged-chr3-84165601-2	chr3	84165101	84166101	+	814.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271728, intron 11 of 11)	MT2A|LTR|ERVL	-9037.0	NR_036654	624713.0	Mm.442604	NR_036654		Gm6525	EG624713	ribosomal protein L36a pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33914388-2	chr17	33913888	33914888	+	814.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355704, intron 7 of 7)	RMER4A|LTR|ERVK	-1788.0	NM_020625	81630.0	Mm.482096	NM_020625	ENSMUSG00000051390	Zbtb22	1110008J20Rik|AI265210|AI415166|Bing1|Zfp297	zinc finger and BTB domain containing 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33407526-2	chr16	33407026	33408026	+	814.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358569, intron 1 of 8)	L1MB7|LINE|L1	7081.0	NM_001358569	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83608205-3	chr11	83607719	83608719	+	814.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 2 of 8)	intron (NR_036453, intron 2 of 8)	-15132.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-144583798-4	chr7	144583216	144584216	+	814.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1280.0	NM_010175	14082.0	Mm.5126	NM_010175	ENSMUSG00000031077	Fadd	Mort1/FADD	Fas (TNFRSF6)-associated via death domain	protein-coding	7.5	0.5	0.0	13.5	0.0	1.5
Merged-chr5-146821518-2	chr5	146820916	146821916	+	814.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11474.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	46.5	130.5	53.5	25.5	59.0	57.5
Merged-chr3-138488765-2	chr3	138488275	138489275	+	814.0	f0_balb.idr|f1_balb.idr	intron (NM_175224, intron 1 of 10)	intron (NM_175224, intron 1 of 10)	607.0	NM_175224	75624.0	Mm.26833	NM_175224	ENSMUSG00000005813	Metap1	1700029C17Rik|AW047992|mKIAA0094	methionyl aminopeptidase 1	protein-coding	1.5	8.0	4.0	0.5	0.0	5.5
Merged-chr17-10317397-4	chr17	10316907	10317907	+	814.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021881, intron 1 of 6)	intron (NM_021881, intron 1 of 6)	1954.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	10.0	7.5	5.5	8.0	7.5	6.0
Merged-chr19-16345144-2	chr19	16344644	16345644	+	814.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 5 of 6)	Lx2B2|LINE|L1	-30140.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-82208933-2	chr4	82208433	82209433	+	814.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30E_MM|LTR|ERV1	-143043.0	NR_151604	102635575.0	Mm.403314	NR_151604	ENSMUSG00000087110	Gm11264	-	predicted gene 11264	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116206127-3	chr3	116205634	116206634	+	814.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47350.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27560318-2	chr7	27559818	27560818	+	814.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122767)	promoter-TSS (NM_001122767)	-158.0	NM_001122767	66367.0	Mm.29831	NM_175107	ENSMUSG00000049643	2310022A10Rik	-	RIKEN cDNA 2310022A10 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-107508120-2	chr10	107507620	107508620	+	814.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-13391.0	NM_008657	17878.0	Mm.11	NM_008657	ENSMUSG00000035923	Myf6	MRF4|bHLHc4|herculin	myogenic factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-77905962-4	chr14	77905451	77906451	+	814.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029495, intron 1 of 11)	intron (NM_029495, intron 1 of 11)	1712.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100201473-2	chr12	100200973	100201973	+	814.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313934, intron 1 of 5)	intron (NM_001313934, intron 1 of 5)	1329.0	NM_001313934	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-89043136-4	chr1	89042638	89043638	+	814.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	27025.0	NR_040471	73475.0	Mm.491040	NR_040471	ENSMUSG00000099378	1700067G17Rik	-	RIKEN cDNA 1700067G17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120795394-2	chr11	120794894	120795894	+	814.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026824, intron 2 of 13)	intron (NM_026824, intron 2 of 13)	1001.0	NM_026824	68730.0	Mm.180622	NM_026824	ENSMUSG00000025155	Dus1l	1110032N12Rik	dihydrouridine synthase 1-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171642670-1	chr1	171642170	171643170	+	814.0	f1_c57bl6.idr	promoter-TSS (NR_106151)	promoter-TSS (NR_106151)	-770.0	NR_106151	102465784.0		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	1.5	6.0	3.0	2.5	2.5	1.0
Merged-chr4-138154128-2	chr4	138153652	138154652	+	814.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355700, intron 10 of 30)	B2_Mm2|SINE|B2	-9057.0	NR_105825	102466907.0		NR_105825	ENSMUSG00000098513	Mir6399	Gm27667|mir-6399|mmu-mir-6399	microRNA 6399	ncRNA	4.5	3.5	3.0	13.0	10.0	1.0
Merged-chr19-29482681-2	chr19	29482181	29483181	+	814.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	39306.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106620338-1	chr1	106619838	106620838	+	814.0	f0_c57.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	-73707.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5689603-2	chr18	5689103	5690103	+	814.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360981, intron 2 of 8)	intron (NM_001360981, intron 2 of 8)	96956.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58478551-2	chr16	58478051	58479051	+	814.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 6 of 10)	intron (NM_001357433, intron 6 of 10)	44875.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124332936-1	chr8	124332436	124333436	+	814.0	f1_c57bl6.idr	intron (NM_139272, intron 10 of 15)	intron (NM_139272, intron 10 of 15)	101000.0	NM_171824	209966.0	Mm.234233	NM_171824	ENSMUSG00000050751	Pgbd5	2900019M05Rik|AI854313	piggyBac transposable element derived 5	protein-coding	0.0	1.5	3.5	0.0	0.0	1.0
Merged-chr18-75819181-2	chr18	75818682	75819682	+	814.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145356)	promoter-TSS (NM_145356)	-996.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	4.0	4.5	2.0	4.0	0.0	0.0
Merged-chr18-57355350-1	chr18	57354850	57355850	+	814.0	f0_c57.idr	intron (NM_028447, intron 1 of 8)	intron (NM_028447, intron 1 of 8)	617.0	NM_028447	73137.0	Mm.29889	NM_028447	ENSMUSG00000024594	Prrc1	1190002C06Rik|2310058D16Rik|3110038B19Rik|9430085A19Rik	proline-rich coiled-coil 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69518471-2	chr11	69517971	69518971	+	814.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 7 of 85)	intron (NM_001081330, intron 7 of 85)	30637.0	NM_001081330	327954.0	Mm.247478	NM_177617	ENSMUSG00000005237	Dnah2	2900022L05Rik|4930564A01|D130094J20|D330014H01Rik|Dnahc2|Dnhd3	dynein, axonemal, heavy chain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87406117-2	chr11	87405570	87406570	+	814.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031386, intron 1 of 30)	B1_Mus1|SINE|Alu	1005.0	NM_031386	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.5	4.0	0.0	0.5	4.0	0.0
Merged-chr5-130222956-2	chr5	130222467	130223467	+	814.0	f0_balb.idr|f0_c57.idr	intron (NM_027854, intron 1 of 6)	B3A|SINE|B2	632.0	NM_027854	71667.0	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	11.0	20.5	2.0	11.5	20.0	3.0
Merged-chr17-33925600-2	chr17	33925100	33926100	+	814.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009318, exon 4 of 8)	exon (NM_009318, exon 4 of 8)	-4294.0	NM_009059	19732.0	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	0.0	2.5	1.5	0.0	0.0	0.0
Merged-chr5-125415971-1	chr5	125415471	125416471	+	814.0	f1_c57bl6.idr	intron (NM_203319, intron 24 of 26)	intron (NM_203319, intron 24 of 26)	18077.0	NM_203319	208144.0	Mm.296385	NM_203319	ENSMUSG00000029480	Dhx37	Gm1050|Gm451|mKIAA1517	DEAH (Asp-Glu-Ala-His) box polypeptide 37	protein-coding	3.0	1.0	0.0	0.0	0.5	0.0
Merged-chr2-52673351-3	chr2	52672858	52673858	+	814.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	ORR1F|LTR|ERVL-MaLR	2501.0	NM_001285428	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84787950-4	chr18	84787444	84788444	+	814.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	43877.0	NR_155706	102641800.0		NR_155706		Gm38576	-	predicted gene, 38576	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24394615-2	chr16	24394115	24395115	+	814.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037954)	promoter-TSS (NR_037954)	-960.0	NR_037954	68841.0	Mm.361995	NR_037954		Lppos	1110054M08Rik|AI481106	LIM domain containing preferred translocation partner in lipoma, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9076889-2	chr3	9076389	9077389	+	814.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14925.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103781708-4	chr3	103781221	103782221	+	813.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301304, intron 1 of 15)	intron (NM_001301304, intron 1 of 15)	9554.0	NM_001301306	15257.0	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84646507-4	chr17	84646002	84647002	+	813.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172256, intron 8 of 12)	intron (NM_172256, intron 8 of 12)	20003.0	NM_172256	213575.0	Mm.246119	NM_172256	ENSMUSG00000024253	Dync2li1	4933404O11Rik|CGI-60|D2lic|LIC3|mD2LIC	dynein cytoplasmic 2 light intermediate chain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-55667231-3	chr3	55666712	55667712	+	813.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030595, intron 48 of 57)	intron (NM_030595, intron 48 of 57)	-115298.0	NM_010750	17116.0	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30062786-3	chr16	30062309	30063309	+	813.93335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2548.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	4.5	0.0	2.0	0.0	0.0	0.5
Merged-chr11-102137798-4	chr11	102137304	102138304	+	813.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-7709.0	NM_145829	217214.0	Mm.31686	NM_145829	ENSMUSG00000048217	Nags	1700120E20Rik|argA	N-acetylglutamate synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45512680-4	chr13	45512161	45513161	+	813.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025508, intron 1 of 8)	intron (NM_025508, intron 1 of 8)	5217.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	0.0	1.5	3.0	0.0	3.0	3.5
Merged-chr16-77444209-4	chr16	77443717	77444717	+	813.891663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015543, intron 2 of 4)	intron (NR_015543, intron 2 of 4)	114889.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110985784-3	chr9	110985290	110986290	+	813.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153100, exon 3 of 3)	3' UTR (NM_153100, exon 3 of 3)	-3709.0	NR_152179	791282.0	Mm.406769	NR_152179	ENSMUSG00000057802	Gm10030	-	predicted gene 10030	ncRNA	4.5	8.5	10.0	8.5	38.0	24.0
Merged-chr18-7870798-3	chr18	7870321	7871321	+	813.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360956, intron 2 of 13)	PB1D7|SINE|Alu	1108.0	NM_001360956	225131.0	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	1.0	15.0	10.0	1.0	17.5	11.0
Merged-chr3-9711209-3	chr3	9710710	9711710	+	813.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	-101125.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95573543-3	chr9	95573104	95574104	+	813.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13787.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55339601-2	chr13	55339101	55340101	+	813.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3A1|LTR|ERVK	-9871.0	NM_016662	17121.0	Mm.20350	NM_016662	ENSMUSG00000021485	Mxd3	4631412E13Rik|Mad3|bHLHc13	Max dimerization protein 3	protein-coding	4.5	0.0	0.0	4.5	0.0	0.0
Merged-chr9-83546027-4	chr9	83545522	83546522	+	813.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2316.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	1.5	0.0	1.5	1.5	3.5	1.5
Merged-chr7-68073530-2	chr7	68073030	68074030	+	813.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	121273.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	1.5	0.0	0.0	0.0	2.0	0.0
Merged-chr6-38900939-4	chr6	38900448	38901448	+	813.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18038.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38440023-4	chr18	38439519	38440519	+	813.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	21112.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97941519-4	chr15	97941025	97942025	+	813.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-22704.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34944111-2	chr17	34943611	34944611	+	813.849976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	6897.0	NR_028527	100217427.0		NR_028527	ENSMUSG00000093009	Snord52	MBII-297	small nucleolar RNA, C/D box 52	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85524394-4	chr11	85523932	85524932	+	813.841675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 16 of 25)	intron (NM_138681, intron 16 of 25)	171268.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72496948-2	chr5	72496448	72497448	+	813.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122756, intron 1 of 21)	intron (NM_001122756, intron 1 of 21)	7260.0	NM_016869	53419.0	Mm.332425	NM_016869	ENSMUSG00000005220	Corin	AV273130|Lrp4	corin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58103502-2	chr11	58103000	58104000	+	813.833374	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356477)	promoter-TSS (NM_001356477)	-470.0	NM_026949	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	34.5	40.0	29.0	31.0	49.0	44.5
Merged-chr4-136173781-2	chr4	136173281	136174281	+	813.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177733, intron 1 of 6)	intron (NM_177733, intron 1 of 6)	1507.0	NM_177733	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167740266-2	chr2	167739766	167740766	+	813.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	49089.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-103360775-2	chr9	103360275	103361275	+	813.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175833, intron 2 of 4)	intron (NM_175833, intron 2 of 4)	4204.0	NM_001134427	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	8.5	0.5	1.5	1.5	5.0	1.5
Merged-chr6-86871978-3	chr6	86871479	86872479	+	813.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040106, intron 1 of 20)	intron (NM_001040106, intron 1 of 20)	22462.0	NM_001040106	269774.0	Mm.221038	NM_177762	ENSMUSG00000057230	Aak1	5530400K14Rik|9630042K20|AU067724|AU067726|BC028270|C79663|D6Ertd245e|R75501|mKIAA1048	AP2 associated kinase 1	protein-coding	0.0	1.0	7.0	1.0	9.0	3.5
Merged-chr18-15149626-2	chr18	15149131	15150131	+	813.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_134112, intron 1 of 4)	intron (NM_134112, intron 1 of 4)	1815.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-20228075-3	chr5	20227569	20228569	+	813.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 5 of 22)	intron (NM_001170746, intron 5 of 22)	320551.0	NM_015823	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82046412-2	chr15	82045912	82046912	+	813.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_011482, intron 1 of 2)	ID_B1|SINE|B4	1186.0	NM_011482	20826.0	Mm.299312	NM_011482	ENSMUSG00000063480	Snu13	FA-1|Fta1|Nhp2l1|Ssfa1	SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5)	protein-coding	0.5	16.5	19.5	5.5	31.0	11.0
Merged-chr1-93070691-2	chr1	93070191	93071191	+	813.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001294150, intron 9 of 46)	intron (NM_001294150, intron 9 of 46)	11789.0	NM_001294150	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-4797495-4	chr6	4797007	4798007	+	813.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50201.0	NM_130877	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	0.0	8.5	1.5	0.0	8.5	1.5
Merged-chr5-63859011-3	chr5	63858518	63859518	+	813.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	46523.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-14104324-3	chr14	14103842	14104842	+	813.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_139227, exon 12 of 12)	3' UTR (NM_139227, exon 12 of 12)	16562.0	NM_025550	66413.0	Mm.27591	NM_025550	ENSMUSG00000021737	Psmd6	2400006A19Rik	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	protein-coding	0.0	0.0	2.0	0.0	8.0	0.0
Merged-chr10-50740275-4	chr10	50739771	50740771	+	813.770874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 30 of 41)	intron (NM_198007, intron 30 of 41)	147602.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-13686804-2	chr17	13686304	13687304	+	813.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73737.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	0.0	3.0	0.0	1.5	1.5	1.0
Merged-chr1-36261413-2	chr1	36260913	36261913	+	813.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	12012.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67348052-4	chr17	67347544	67348544	+	813.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	6415.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	16.5	37.5	32.5	29.0	44.5	27.0
Merged-chr6-72490639-4	chr6	72490142	72491142	+	813.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-51084.0	NM_145569	232087.0	Mm.29815	NM_145569	ENSMUSG00000053907	Mat2a	D630045P18Rik	methionine adenosyltransferase II, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73968342-3	chr12	73967839	73968839	+	813.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178392, exon 3 of 10)	exon (NM_178392, exon 3 of 10)	3809.0	NM_178392	75627.0	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5061910-4	chr11	5061398	5062398	+	813.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144560, intron 6 of 6)	CpG	3429.0	NM_144560	78926.0	Mm.44591	NM_030228	ENSMUSG00000034201	Gas2l1	4930500E24Rik|D0Jmb1|Gar22|TU-71.1	growth arrest-specific 2 like 1	protein-coding	2.5	0.0	0.5	0.0	0.0	0.5
Merged-chr14-30764606-3	chr14	30764103	30765103	+	813.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166531, intron 2 of 21)	intron (NM_001166531, intron 2 of 21)	48988.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	8.0	0.0	0.5	1.0	1.5	0.0
Merged-chr1-159233779-4	chr1	159233199	159234199	+	813.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011931, intron 1 of 19)	intron (NM_011931, intron 1 of 19)	1499.0	NM_011931	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	36.0	105.0	70.0	36.5	77.5	78.0
Merged-chr9-64447755-4	chr9	64447257	64448257	+	813.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134399, intron 1 of 24)	intron (NM_001134399, intron 1 of 24)	62131.0	NM_001134399	214058.0	Mm.127721	NM_172522	ENSMUSG00000036466	Megf11	2410080H04Rik|D130061K05	multiple EGF-like-domains 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135611116-4	chr5	135610621	135611621	+	813.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-21533.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	0.0	6.0	3.5	0.0	5.0	0.0
Merged-chr4-133190990-4	chr4	133190483	133191483	+	813.7071530000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 6 of 8)	intron (NM_153423, intron 6 of 8)	-4672.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	6.0	0.5	5.0	7.0	6.0	3.0
Merged-chr4-133730375-3	chr4	133729878	133730878	+	813.688904	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080819, intron 1 of 19)	intron (NM_001080819, intron 1 of 19)	-13270.0	NR_106086	102465707.0		NR_106086	ENSMUSG00000104566	Mir7227	mmu-mir-7227	microRNA 7227	ncRNA	35.0	22.5	11.0	25.5	15.0	6.0
Merged-chr2-48988188-4	chr2	48987686	48988686	+	813.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029924, intron 1 of 16)	LTR87|LTR|ERVL?	-37952.0	NM_001355296	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-41852206-3	chr12	41851703	41852703	+	813.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 6 of 6)	intron (NM_053122, intron 6 of 6)	-366146.0	NM_010733	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70528763-3	chr11	70528253	70529253	+	813.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008946)	TTS (NM_008946)	3396.0	NM_008946	19175.0	Mm.98	NM_008946	ENSMUSG00000018286	Psmb6	Lmp19|Mpnd	proteasome (prosome, macropain) subunit, beta type 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60114412-3	chr11	60113902	60114902	+	813.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009021, intron 1 of 5)	intron (NM_009021, intron 1 of 5)	9389.0	NM_009021	19377.0	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122523365-3	chr8	122522856	122523856	+	813.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037298, intron 1 of 50)	intron (NM_001037298, intron 1 of 50)	27973.0	NM_001037298	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	16.5	0.5	2.5	2.0	12.0	7.5
Merged-chr10-82696223-2	chr10	82695685	82696685	+	813.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2822.0	NM_001081218	67933.0	Mm.127405	NM_026462	ENSMUSG00000020246	Hcfc2	1700129L13Rik|AU019838|fkls	host cell factor C2	protein-coding	2.0	1.0	8.0	0.0	0.0	7.5
Merged-chr19-8944894-2	chr19	8944390	8945390	+	813.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011842, intron 3 of 17)	intron (NM_011842, intron 3 of 17)	2970.0	NM_011842	23942.0	Mm.25339	NM_011842	ENSMUSG00000071646	Mta2	AW550797|Mata1l1|Mta1l1|mmta2	metastasis-associated gene family, member 2	protein-coding	2.0	1.0	7.0	2.0	1.0	2.0
Merged-chr10-81182086-2	chr10	81181599	81182599	+	813.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190474)	promoter-TSS (NM_001190474)	-908.0	NM_001190474	13144.0	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101261051-2	chr15	101260551	101261551	+	813.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5795.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.0	8.5	11.5	1.0	7.0	7.5
Merged-chr17-26436105-2	chr17	26435605	26436605	+	813.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081656, intron 2 of 4)	intron (NM_001081656, intron 2 of 4)	21140.0	NM_001081656	240055.0	Mm.133211	NM_001081656	ENSMUSG00000034413	Neurl1b	C230078M08Rik|EG240055	neuralized E3 ubiquitin protein ligase 1B	protein-coding	0.0	13.5	1.5	0.0	2.5	5.0
Merged-chr16-36667459-2	chr16	36666959	36667959	+	813.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-1382.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78623617-4	chr15	78623113	78624113	+	813.608337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26566.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5583172-4	chr6	5582697	5583697	+	813.604126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86919.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-185497509-2	chr1	185497009	185498009	+	813.599976	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033600, exon 1 of 1)	non-coding (NR_033600, exon 1 of 1)	203.0	NR_033600	114668.0	Mm.379303	NR_033600	ENSMUSG00000102185	5033404E19Rik	-	NSA2 ribosome biogenesis homolog pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91921402-4	chr2	91920883	91921883	+	813.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007699)	promoter-TSS (NM_007699)	-806.0	NM_007699	12672.0	Mm.330405	NM_007699	ENSMUSG00000040495	Chrm4	Chrm-4|M4	cholinergic receptor, muscarinic 4	protein-coding	0.0	0.0	2.0	2.0	0.0	0.0
Merged-chr10-55980376-3	chr10	55979887	55980887	+	813.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126530.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97489777-3	chr11	97489279	97490279	+	813.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021493, intron 15 of 18)	intron (NM_021493, intron 15 of 18)	10561.0	NM_001289118	100141474.0	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	0.0	7.0	1.0	0.5	0.0	6.0
Merged-chr12-17551473-3	chr12	17551011	17552011	+	813.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013614)	TTS (NM_013614)	6638.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	0.0	16.5	7.0	0.0	0.0	3.5
Merged-chr12-117853532-4	chr12	117853038	117854038	+	813.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146040, intron 1 of 9)	intron (NM_146040, intron 1 of 9)	9677.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	0.0	4.0	2.0	1.0	8.0	0.0
Merged-chr14-30609502-4	chr14	30609010	30610010	+	813.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 2 of 17)	intron (NM_011103, intron 2 of 17)	800.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	5.0	2.5	7.0	0.0	0.5	2.0
Merged-chr6-140853725-4	chr6	140853252	140854252	+	813.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	226867.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-46662061-3	chr2	46661563	46662563	+	813.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	965458.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46335147-4	chr18	46334652	46335652	+	813.520813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23224.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78827321-2	chr15	78826821	78827821	+	813.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15326.0	NM_027219	104445.0	Mm.307488	NM_027219	ENSMUSG00000049521	Cdc42ep1	1810058K22Rik|AA980734|Borg5|CEP1|MSE55	CDC42 effector protein (Rho GTPase binding) 1	protein-coding	0.0	2.5	0.0	0.0	0.0	0.0
Merged-chr5-107360088-2	chr5	107359588	107360588	+	813.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054054, intron 13 of 18)	intron (NM_054054, intron 13 of 18)	28894.0	NM_054054	114642.0	Mm.182836	NM_054054	ENSMUSG00000029279	Brdt	7420412D09Rik|Brd6|Fsrg3	bromodomain, testis-specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-122960574-4	chr4	122960081	122961081	+	813.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029662, intron 1 of 13)	intron (NM_029662, intron 1 of 13)	607.0	NM_029662	76574.0	Mm.331842	NM_029662	ENSMUSG00000028655	Mfsd2a	1700018O18Rik|Mfsd2|NLS1	major facilitator superfamily domain containing 2A	protein-coding	0.5	0.0	3.0	0.0	0.0	1.5
Merged-chr1-191395775-2	chr1	191395275	191396275	+	813.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144880, intron 1 of 12)	intron (NM_144880, intron 1 of 12)	1266.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	16.0	34.0	37.5	17.0	53.5	44.0
Merged-chr7-79274301-2	chr7	79273801	79274801	+	813.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018811, intron 1 of 10)	intron (NM_018811, intron 1 of 10)	1035.0	NM_018811	54608.0	Mm.365490	NM_018811	ENSMUSG00000039202	Abhd2	2210009N18Rik|LABH2|Labh-2	abhydrolase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118587729-2	chr9	118587229	118588229	+	813.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18980.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6237932-2	chr19	6237432	6238432	+	813.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-2092.0	NM_198168	225849.0	Mm.118076	NM_198168	ENSMUSG00000024777	Ppp2r5b	B'beta|BC026670	protein phosphatase 2, regulatory subunit B', beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88467285-4	chr3	88466767	88467767	+	813.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-6085.0	NM_001163489	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8534367-2	chr4	8533867	8534867	+	813.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1277.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118684110-2	chr9	118683556	118684556	+	813.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 13 of 27)	intron (NM_133721, intron 13 of 27)	-27636.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	12.0	2.5	11.5	4.5	1.5
Merged-chr5-112268633-2	chr5	112268133	112269133	+	813.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312893, intron 5 of 5)	intron (NM_001312893, intron 5 of 5)	-8058.0	NM_001326590	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-33672710-2	chr1	33672210	33673210	+	813.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	2886.0	NR_033199	67503.0	Mm.87069	NM_026204	ENSMUSG00000103746	1700001G17Rik	-	RIKEN cDNA 1700001G17 gene	ncRNA	3.5	0.0	0.0	4.0	4.5	0.0
Merged-chr3-79419114-2	chr3	79418614	79419614	+	813.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142953, intron 2 of 4)	intron (NM_001142953, intron 2 of 4)	73738.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16637648-3	chr1	16637161	16638161	+	813.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-18323.0	NM_001271017	66799.0	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	0.0	0.0	2.5	0.0	0.0	7.0
Merged-chr14-20731997-2	chr14	20731497	20732497	+	813.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010811, intron 2 of 14)	B3|SINE|B2	2565.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100854717-2	chr7	100854217	100855217	+	813.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177073, intron 1 of 10)	intron (NM_177073, intron 1 of 10)	8696.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88630125-2	chr3	88629625	88630625	+	813.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 2 of 21)	intron (NM_001198913, intron 2 of 21)	8731.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-43381121-2	chr11	43380621	43381621	+	813.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6660.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41999217-3	chr19	41998558	41999558	+	813.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	17295.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	50.5	62.5	83.5	18.0	48.0	57.0
Merged-chr13-118715229-2	chr13	118714729	118715729	+	813.5	f0_balb.idr|f1_balb.idr	5' UTR (NM_008002, exon 1 of 3)	5' UTR (NM_008002, exon 1 of 3)	530.0	NM_008002	14165.0	Mm.317323	NM_008002	ENSMUSG00000021732	Fgf10	AEY17|BB213776|Fgf-10|Gsfaey17	fibroblast growth factor 10	protein-coding	0.0	10.5	1.0	0.0	0.0	0.5
Merged-chr15-79946925-2	chr15	79946433	79947433	+	813.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14287.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	0.0	0.0	2.5	0.0	1.5	6.0
Merged-chr8-18852723-2	chr8	18852223	18853223	+	813.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026792, intron 1 of 7)	RMER1B|Other|Other	6444.0	NM_026792	52123.0	Mm.24117	NM_026792	ENSMUSG00000031467	Agpat5	1110013A05Rik|D8Ertd319e	1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	protein-coding	2.0	0.0	0.0	2.0	0.0	0.5
Merged-chr13-47151255-1	chr13	47150755	47151755	+	813.5	f0_balb.idr	intron (NM_146042, intron 1 of 7)	BLACKJACK|DNA|hAT-Blackjack	-2585.0	NR_126083	319467.0	Mm.447279	NR_126083	ENSMUSG00000114961	A930002C04Rik	-	RIKEN cDNA A930002C04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38663216-2	chr15	38662716	38663716	+	813.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025494, intron 1 of 12)	B1_Mur2|SINE|Alu	1312.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19166286-2	chr7	19165786	19166786	+	813.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080815)	promoter-TSS (NM_001080815)	-159.0	NM_001080815	381853.0	Mm.333633	NM_001080815	ENSMUSG00000030406	Gipr	GIP-R|Gm1081|Gm160	gastric inhibitory polypeptide receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118259573-2	chr11	118259073	118260073	+	813.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033528)	TTS (NM_001033528)	-10981.0	NM_011180	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-37886969-2	chr3	37886469	37887469	+	813.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11844.0	NR_040559	626410.0	Mm.389417	NR_040559	ENSMUSG00000106461	Gm20755	-	predicted gene, 20755	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102153859-3	chr7	102153368	102154368	+	813.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_022979, exon 16 of 23)	exon (NM_022979, exon 16 of 23)	-37155.0	NM_001081424	504186.0	Mm.334074	NM_001081424	ENSMUSG00000066279	Chrna10	-	cholinergic receptor, nicotinic, alpha polypeptide 10	protein-coding	15.0	12.5	4.5	9.5	17.0	6.5
Merged-chr5-20884370-2	chr5	20883870	20884870	+	813.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177601, intron 1 of 1)	RSINE1|SINE|B4	1917.0	NM_177601	212090.0	Mm.347525	NM_177601	ENSMUSG00000045435	Tmem60	BC027828	transmembrane protein 60	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50764681-2	chr16	50764181	50765181	+	813.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-18728.0	NR_131006	78639.0	Mm.160109	NR_131005	ENSMUSG00000092276	1700116B05Rik	-	RIKEN cDNA 1700116B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33348192-4	chr16	33347709	33348709	+	813.483337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32527.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-120259752-6	chr13	120259178	120260178	+	813.455566	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3417.0	NM_001310627	236546.0	Mm.247428	NM_199060	ENSMUSG00000095071	AF067061	-	cDNA sequence AF067061	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71308149-4	chr8	71307620	71308620	+	813.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	35406.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	14.5	24.0	23.5	16.0	49.5	40.5
Merged-chr18-82903202-4	chr18	82902727	82903727	+	813.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-7652.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-90058558-2	chr13	90058058	90059058	+	813.416687	f1_balb.idr|f1_c57bl6.idr	intron (NM_028012, intron 3 of 7)	Charlie24|DNA|hAT-Charlie	31050.0	NM_028012	108138.0	Mm.37531	NM_028012	ENSMUSG00000021615	Xrcc4	2310057B22Rik|AW413319|AW545101	X-ray repair complementing defective repair in Chinese hamster cells 4	protein-coding	11.0	25.0	24.0	9.5	27.5	19.5
Merged-chr6-83142358-3	chr6	83141783	83142783	+	813.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355524, exon 1 of 12)	5' UTR (NM_001355524, exon 1 of 12)	177.0	NM_001355525	20166.0	Mm.4139	NM_009106	ENSMUSG00000034930	Rtkn	-	rhotekin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82236751-3	chr15	82236256	82237256	+	813.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178269, intron 4 of 4)	intron (NM_178269, intron 4 of 4)	7580.0	NM_001080158	66570.0	Mm.23596	NM_025639	ENSMUSG00000068101	Cenpm	2610019I03Rik|AI853711|Pane1	centromere protein M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55498116-4	chr11	55497582	55498582	+	813.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013716, intron 10 of 11)	intron (NM_013716, intron 10 of 11)	-3144.0	NR_106112	102465760.0		NR_106112	ENSMUSG00000098906	Mir7652	Gm27932|mmu-mir-7652	microRNA 7652	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-14579793-3	chr3	14579257	14580257	+	813.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007892, intron 1 of 7)	intron (NM_007892, intron 1 of 7)	1086.0	NM_007892	13559.0	Mm.153415	NM_007892	ENSMUSG00000027552	E2f5	AU024671|E2F-5	E2F transcription factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35539202-3	chr12	35538683	35539683	+	813.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4194.0	NM_001314027	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	6.0	10.0	7.0	18.0	6.0	2.0
Merged-chr13-57022947-4	chr13	57022412	57023412	+	813.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127123.0	NM_001302373	26946.0	Mm.62409	NM_012035	ENSMUSG00000021541	Trpc7	TRP7|Trrp8	transient receptor potential cation channel, subfamily C, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-57701989-4	chr14	57701492	57702492	+	813.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015771, intron 3 of 7)	intron (NM_015771, intron 3 of 7)	32426.0	NM_153382	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-53398514-4	chr9	53398020	53399020	+	813.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212445, intron 7 of 7)	intron (NM_212445, intron 7 of 7)	2366.0	NR_105807	102466640.0		NR_105807	ENSMUSG00000098362	Mir130c	Gm27641|mmu-mir-130c	microRNA 130c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-117438932-4	chr3	117438414	117439414	+	813.354187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78038.0	NM_177664	229791.0	Mm.140138	NM_177664	ENSMUSG00000044667	Plppr4	A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455	phospholipid phosphatase related 4	protein-coding	0.0	2.0	4.5	1.5	0.0	2.0
Merged-chr14-27142910-4	chr14	27142380	27143380	+	813.354126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1113.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79160462-2	chr8	79159962	79160962	+	813.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 8 of 14)	intron (NM_001294279, intron 8 of 14)	88121.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-95664599-2	chr1	95664099	95665099	+	813.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159745, intron 1 of 3)	intron (NM_001159745, intron 1 of 3)	2995.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-37714083-2	chr4	37713583	37714583	+	813.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	464680.0	NR_151605	102636890.0	Mm.109154	NR_151605	ENSMUSG00000086026	Gm12374	-	predicted gene 12374	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-41011014-2	chr8	41010513	41011513	+	813.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 7 of 13)	intron (NM_001005863, intron 7 of 13)	-6455.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	27.5	32.5	21.0	9.5	14.5	11.5
Merged-chr17-34437693-4	chr17	34437197	34438197	+	813.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001177, intron 6 of 19)	intron (NM_001001177, intron 6 of 19)	38240.0	NM_030746	632126.0	Mm.484958	NM_030746	ENSMUSG00000058435	Btnl4	Btn3a3|EG632126|NG11	butyrophilin-like 4	protein-coding	0.0	6.0	7.5	0.0	10.5	10.5
Merged-chr12-67059417-2	chr12	67058892	67059892	+	813.333313	f0_balb.idr|f1_balb.idr	intron (NM_001193266, intron 1 of 16)	GSAT_MM|Satellite|Satellite	163157.0	NM_001193266	320772.0	Mm.227680	NM_207010	ENSMUSG00000034912	Mdga2	6720489L24Rik|9330209L04Rik|Adp|Mamdc1	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-114442443-3	chr8	114441918	114442918	+	813.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019573, intron 1 of 8)	intron (NM_019573, intron 1 of 8)	2766.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-48842733-2	chr6	48842233	48843233	+	813.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001098271, intron 3 of 6)	intron (NM_001098271, intron 3 of 6)	1077.0	NM_001098271	66058.0	Mm.27061	NM_025326	ENSMUSG00000023367	Tmem176a	0610011I04Rik|AU040201|AU041743|Keg2	transmembrane protein 176A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-148419815-3	chr3	148419317	148420317	+	813.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	534818.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160700494-3	chr2	160699973	160700973	+	813.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009408, intron 9 of 20)	intron (NM_009408, intron 9 of 20)	-30837.0	NM_021280	18803.0	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152104594-3	chr3	152104102	152105102	+	813.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016867, intron 4 of 5)	ID4_|SINE|ID	61298.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-34494570-4	chr4	34494059	34495059	+	813.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56056.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-21393164-2	chr12	21392680	21393680	+	813.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011739, intron 4 of 4)	intron (NM_011739, intron 4 of 4)	-19548.0	NM_009615	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	24.0	70.0	70.5	9.0	21.0	37.5
Merged-chr5-135008068-2	chr5	135007568	135008568	+	813.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1084.0	NM_001190437	68758.0	Mm.389700	NM_145215	ENSMUSG00000040532	Abhd11	1110054D16Rik|A630008N09Rik|Wbscr21	abhydrolase domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69420953-2	chr12	69420453	69421453	+	813.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	48803.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	0.0	0.0	1.0	0.0	6.0	0.0
Merged-chr14-20702000-3	chr14	20701483	20702483	+	813.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_029446)	TTS (NR_029446)	-1044.0	NM_025366	66121.0	Mm.246996	NM_025366	ENSMUSG00000063787	Chchd1	1110001O19Rik|2400010G13Rik|MRP-S37	coiled-coil-helix-coiled-coil-helix domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139735774-4	chr5	139735281	139736281	+	813.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174850, intron 1 of 16)	intron (NM_174850, intron 1 of 16)	552.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	29.0	56.0	64.0	29.5	62.0	32.5
Merged-chr11-85686391-4	chr11	85685917	85686917	+	813.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 24 of 25)	ORR1E|LTR|ERVL-MaLR	33327.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64050124-2	chr9	64049624	64050624	+	813.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_040713, intron 1 of 2)	intron (NR_040713, intron 1 of 2)	295.0	NR_040713	68697.0	Mm.491042	NR_040713	ENSMUSG00000097036	1110036E04Rik	-	RIKEN cDNA 1110036E04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173586760-4	chr2	173586265	173587265	+	813.233337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027957, intron 13 of 14)	CpG	-8424.0	NM_027303	70065.0	Mm.425115	NM_027303	ENSMUSG00000027517	Ankrd60	1700019A24Rik|1700030G11Rik	ankyrin repeat domain 60	protein-coding	2.0	0.0	0.0	0.5	0.0	0.0
Merged-chr4-44163319-4	chr4	44162809	44163809	+	813.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038993, intron 1 of 11)	MTD|LTR|ERVL-MaLR	4229.0	NM_175201	73469.0	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-105082305-3	chr14	105081816	105082816	+	813.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32360.0	NR_040628	100502987.0	Mm.124957	NR_040628		Gm17066	-	predicted gene 17066	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3284249-3	chr8	3283749	3284749	+	813.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4632.0	NM_001330056	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0.0	4.0	0.5	0.0	0.0	0.0
Merged-chr10-68268857-3	chr10	68268375	68269375	+	813.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	9851.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	14.5	14.0	25.0	16.0	22.0	18.0
Merged-chr10-67081813-3	chr10	67081303	67082303	+	813.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 1 of 7)	intron (NM_178606, intron 1 of 7)	15185.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41264762-4	chr19	41264234	41265234	+	813.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133352)	promoter-TSS (NM_133352)	-730.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35420589-4	chr17	35420090	35421090	+	813.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4257.0	NM_023124	15019.0	Mm.486287	NM_023124		H2-Q8	H-2Q8|MMS10-T|Ms10t|Qa-2|Qa-8|Qa8	histocompatibility 2, Q region locus 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29582600-2	chr2	29582100	29583100	+	813.18335	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37120.0	NM_054050	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99239299-3	chr5	99238794	99239794	+	813.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145839, intron 4 of 13)	intron (NM_145839, intron 4 of 13)	13633.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134171046-4	chr6	134170534	134171534	+	813.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	135334.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	5.5	13.0	8.0	3.5	4.5	8.0
Merged-chr8-122429272-2	chr8	122428772	122429772	+	813.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301284, intron 1 of 4)	B2_Mm2|SINE|B2	3668.0	NM_001301284	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76329487-2	chr14	76328987	76329987	+	813.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78025.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-49425794-4	chr2	49425284	49426284	+	813.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-25702.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5770592-2	chr19	5770092	5771092	+	813.125	f1_balb.idr|f1_c57bl6.idr	intron (NR_155264, intron 2 of 15)	intron (NR_155264, intron 2 of 15)	827.0	NM_023912	78891.0	Mm.276063	NM_023912	ENSMUSG00000024941	Scyl1	2810011O19Rik|C85140|Ntkl|mdf|mfd|p105	SCY1-like 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31955153-4	chr14	31954632	31955632	+	813.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73971.0	NM_030166	78754.0	Mm.40681	NM_030166	ENSMUSG00000021903	Galnt15	4631401E18Rik|Galntl2|mpp-GalNAc-T15	polypeptide N-acetylgalactosaminyltransferase 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86485174-4	chr11	86484672	86485672	+	813.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029788, intron 1 of 8)	CpG	515.0	NM_029788	76892.0	Mm.262707	NM_029788	ENSMUSG00000020521	Rnft1	0610013E23Rik|AV007605	ring finger protein, transmembrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141246709-4	chr4	141246206	141247206	+	813.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172520, intron 3 of 16)	intron (NM_172520, intron 3 of 16)	3822.0	NM_172520	213649.0	Mm.134460	NM_172520	ENSMUSG00000028919	Arhgef19	6030432F23|6430573B13Rik|WGEF	Rho guanine nucleotide exchange factor (GEF) 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-91167074-4	chr10	91166573	91167573	+	813.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080129, intron 1 of 8)	B3|SINE|B2	3477.0	NM_001283048	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53275147-2	chr19	53274698	53275698	+	813.1190190000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-19993.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-144240604-3	chr1	144240101	144241101	+	813.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	8503.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-32521925-3	chr6	32521436	32522436	+	813.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 1 of 31)	MTD|LTR|ERVL-MaLR	10795.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87929575-2	chr3	87929075	87930075	+	813.083374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177663)	promoter-TSS (NM_177663)	620.0	NM_153562	229503.0	Mm.296008	NM_153562	ENSMUSG00000004896	Rrnad1	-	ribosomal RNA adenine dimethylase domain containing 1	protein-coding	33.0	54.0	48.5	34.5	57.0	46.0
Merged-chr8-34216775-4	chr8	34216276	34217276	+	813.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-50064.0	NR_105820	102465211.0		NR_105820	ENSMUSG00000098785	Mir6395	Gm27561|mmu-mir-6395	microRNA 6395	ncRNA	0.0	5.5	0.0	0.0	0.0	0.0
Merged-chr6-29248616-3	chr6	29248140	29249140	+	813.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23848.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-9071764-3	chr10	9071264	9072264	+	813.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-185694.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98787114-3	chr7	98786622	98787622	+	813.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER63A|DNA|hAT-Blackjack	-47990.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4874322-4	chr12	4873832	4874832	+	813.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033488)	promoter-TSS (NM_001033488)	27.0	NM_001033488	432628.0	Mm.154078	NM_001033488	ENSMUSG00000037336	Mfsd2b	Gm1964	major facilitator superfamily domain containing 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-73125166-2	chr4	73124666	73125666	+	813.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2A|LINE|L1	-272532.0	NM_001199270	353204.0	Mm.317892	NM_001199270	ENSMUSG00000059343	Aldoart1	4921524E03Rik|Aldo1-ps|Aldo1-ps2|Aldoa-ps2	aldolase 1 A, retrogene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84765473-2	chr12	84764973	84765973	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 1 of 3)	intron (NM_023409, intron 1 of 3)	7639.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27374828-2	chr14	27374258	27375258	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 3 of 10)	AT_rich|Low_complexity|Low_complexity	13369.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	1.0	10.0	2.5	2.0	6.5	2.0
Merged-chr1-54921768-1	chr1	54921268	54922268	+	813.0	f0_balb.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	4619.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111150412-2	chr12	111149912	111150912	+	813.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15958.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44395209-2	chr9	44394709	44395709	+	813.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B2|LTR|ERVL	-1718.0	NM_001293631	14385.0	Mm.30087	NM_008063	ENSMUSG00000032114	Slc37a4	100043178|G6PT|G6pt1|GSD-1b|mG6PT	solute carrier family 37 (glucose-6-phosphate transporter), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25459883-2	chr2	25459383	25460383	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153557, intron 5 of 6)	intron (NM_153557, intron 5 of 6)	1211.0	NM_153557	227622.0	Mm.261780	NM_153557	ENSMUSG00000047617	Paxx	D930050G13Rik	non-homologous end joining factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84773997-3	chr12	84773457	84774457	+	813.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023409)	promoter-TSS (NM_023409)	687.0	NM_028863	74316.0	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-53485841-3	chr17	53485360	53486360	+	813.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025887, intron 2 of 5)	MLTR11A|LTR|ERVK	6626.0	NM_025887	271457.0	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	5.5	22.0	22.5	10.5	26.0	15.5
Merged-chr18-34221801-2	chr18	34221302	34222302	+	813.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040534)	promoter-TSS (NR_040534)	-30.0	NR_040534	633395.0	Mm.414290	NR_040534	ENSMUSG00000073607	Gm10548	-	ribosomal protein L29 pseudogene	pseudo	47.5	175.0	101.5	36.5	117.5	88.0
Merged-chr15-100870488-2	chr15	100869988	100870988	+	813.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077499)	promoter-TSS (NM_001077499)	-157.0	NM_001077499	20273.0	Mm.385012	NM_011323	ENSMUSG00000023033	Scn8a	AI853486|C630029C19Rik|NaCh6|Nav1.6|dmu|med|mnd-2|mnd2|nmf2|nmf335|nmf58|nur14|seal	sodium channel, voltage-gated, type VIII, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-53462435-2	chr3	53461935	53462935	+	813.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172501, exon 2 of 7)	exon (NM_172501, exon 2 of 7)	823.0	NM_172501	212114.0	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21746045-2	chr14	21745545	21746545	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001007268, intron 3 of 7)	B4A|SINE|B4	2577.0	NM_001007268	27389.0	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107550721-1	chr9	107550221	107551221	+	813.0	f1_balb.idr	promoter-TSS (NM_001243748)	promoter-TSS (NM_001243748)	-834.0	NM_001243748	56289.0	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	0.5	0.0	0.0	4.5	5.0	2.0
Merged-chr17-35965920-2	chr17	35965420	35966420	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013854, intron 1 of 22)	intron (NM_013854, intron 1 of 22)	3830.0	NM_013854	224742.0	Mm.329022	NM_013854	ENSMUSG00000038762	Abcf1	AU041969|Abc50|D17Wsu166e|GCN20	ATP-binding cassette, sub-family F (GCN20), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70602967-2	chr8	70602467	70603467	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133772, intron 1 of 16)	RLTR25A|LTR|ERVK	5347.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	0.0	1.0	1.0	6.0	0.0	0.0
Merged-chr9-78073943-4	chr9	78073435	78074435	+	813.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	21977.0	NM_008103	14531.0	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1	protein-coding	6.0	5.0	6.0	28.0	12.5	6.0
Merged-chr7-19886542-2	chr7	19886009	19887009	+	813.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177036, exon 2 of 7)	exon (NM_177036, exon 2 of 7)	1456.0	NM_177036	319930.0	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-47027774-2	chr7	47027274	47028274	+	813.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19360.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55030657-2	chr1	55030105	55031105	+	813.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3127.0	NM_031179	81898.0	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	0.0	7.5	13.5	0.0	7.0	13.5
Merged-chr3-8981053-1	chr3	8980553	8981553	+	813.0	f0_balb.idr	intron (NM_009412, intron 1 of 5)	MTD|LTR|ERVL-MaLR	-16907.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	21.0	56.0	29.0	30.5	65.0	25.0
Merged-chr2-147036050-2	chr2	147035530	147036530	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356402, intron 13 of 28)	intron (NM_001356402, intron 13 of 28)	23031.0	NM_001356402	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	20.5	18.5	13.5	8.5	32.0	21.0
Merged-chr16-38708736-2	chr16	38708236	38709236	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 1 of 11)	PB1D10|SINE|Alu	4299.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79279661-2	chr11	79279161	79280161	+	813.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24966.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	6.5	26.0	16.0	13.5	32.5	20.0
Merged-chr3-116861184-2	chr3	116860678	116861678	+	813.0	f0_c57.idr|f1_balb.idr	promoter-TSS (NM_009146)	promoter-TSS (NM_009146)	-502.0	NM_009146	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	2.0	22.5	11.0	1.0	11.5	11.0
Merged-chr8-42210198-2	chr8	42209695	42210695	+	813.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	382928.0	NR_045497	69966.0	Mm.416903	NR_045497	ENSMUSG00000102046	2810404M03Rik	-	RIKEN cDNA 2810404M03 gene	ncRNA	6.5	2.0	7.0	0.0	9.5	2.5
Merged-chr4-101192209-2	chr4	101191709	101192709	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 2 of 24)	intron (NM_146145, intron 2 of 24)	73073.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125485146-2	chr5	125484646	125485646	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030210, intron 3 of 17)	intron (NM_030210, intron 3 of 17)	9273.0	NM_030210	78894.0	Mm.431573	NM_030210	ENSMUSG00000029482	Aacs	2210408B16Rik|SUR5	acetoacetyl-CoA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-6807684-2	chr5	6807184	6808184	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163223, intron 2 of 3)	RMER19B|LTR|ERVK	-496480.0	NM_027603	70920.0	Mm.158494	NM_027603	ENSMUSG00000040514	Tex47	4921511H03Rik	testis expressed 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191392734-3	chr1	191392241	191393241	+	813.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144880, intron 1 of 12)	intron (NM_144880, intron 1 of 12)	4300.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	17.0	18.5	2.5	19.0	4.5	1.0
Merged-chr4-130798535-1	chr4	130798035	130799035	+	813.0	f0_balb.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	5998.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132939634-3	chr4	132939142	132940142	+	813.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17091.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	1.5	2.0	8.5	1.5	2.5	5.5
Merged-chr6-22354267-2	chr6	22353767	22354767	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138587, intron 1 of 9)	intron (NM_138587, intron 1 of 9)	1814.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6350651-2	chr4	6350151	6351151	+	813.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15029.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	7.0	0.0	4.0	1.0	2.0	1.0
Merged-chr9-25569881-3	chr9	25569373	25570373	+	813.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 3 of 7)	intron (NM_026189, intron 3 of 7)	88276.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149403182-2	chr4	149402682	149403682	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022022, intron 1 of 26)	intron (NM_022022, intron 1 of 26)	23449.0	NM_022022	63958.0	Mm.415260	NM_022022	ENSMUSG00000028960	Ube4b	4930551I19Rik|4933406G05Rik|AU014668|D4Bwg0973e|UFD2|UFD2a|Ufd2p|mKIAA0684	ubiquitination factor E4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100105971-2	chr12	100105471	100106471	+	813.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6360.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-69676892-3	chr2	69676392	69677392	+	813.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081087, intron 3 of 5)	B2_Mm2|SINE|B2	6772.0	NM_001081087	228003.0	Mm.178784	NM_001081087	ENSMUSG00000075307	Klhl41	Gm112|Kbtbd10|SARCOSIN	kelch-like 41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71674014-2	chr8	71673514	71674514	+	813.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2257.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	2.0	2.0	1.5	0.0	0.0	4.5
Merged-chr12-8947476-2	chr12	8946976	8947976	+	813.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010770)	promoter-TSS (NM_010770)	-453.0	NM_010770	17182.0	Mm.42226	NM_010770	ENSMUSG00000020583	Matn3	AV009181	matrilin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34307808-1	chr17	34307308	34308308	+	813.0	f1_c57bl6.idr	intron (NM_010382, intron 1 of 5)	intron (NM_010382, intron 1 of 5)	1941.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	52.0	152.0	62.0	61.5	324.0	83.5
Merged-chr7-75715870-2	chr7	75715370	75716370	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 17 of 36)	intron (NM_029332, intron 17 of 36)	-132468.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-36717807-2	chr7	36717307	36718307	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172298, intron 1 of 1)	intron (NM_172298, intron 1 of 1)	19689.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	16.5	12.0	23.5	4.0	5.5	8.0
Merged-chr19-6240395-2	chr19	6239895	6240895	+	813.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1273.0	NM_194348	329015.0	Mm.277384	NM_194348	ENSMUSG00000024773	Atg2a	1810013C15Rik|A830054M12|BC023754|mKIAA0404	autophagy related 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31299351-2	chr2	31298851	31299851	+	813.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53428.0	NM_019681	14299.0	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135657116-2	chr7	135656616	135657616	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316681, intron 3 of 17)	intron (NM_001316681, intron 3 of 17)	-4802.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-83551705-2	chr9	83551205	83552205	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	3367.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	1.5	11.0	0.0	0.0	6.0	2.0
Merged-chr1-184395414-2	chr1	184394914	184395914	+	813.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	162277.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55464953-2	chr12	55464453	55465453	+	813.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27694.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-70435209-1	chr18	70434709	70435709	+	813.0	f1_balb.idr	Intergenic	Intergenic	-37245.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	3.5	9.0	8.5	3.0	11.5	9.0
Merged-chr2-68451228-3	chr2	68450721	68451721	+	813.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 1 of 17)	intron (NM_016866, intron 1 of 17)	20760.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-28681792-3	chr2	28681273	28682273	+	813.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289575, intron 19 of 22)	intron (NM_001289575, intron 19 of 22)	17878.0	NM_027283	69987.0	Mm.239376	NM_027283	ENSMUSG00000026809	Spaca9	1700026L06Rik|MAST	sperm acrosome associated 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79496523-4	chr8	79496027	79497027	+	812.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97059.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7924433-4	chr10	7923920	7924920	+	812.983337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359534, intron 2 of 6)	intron (NM_001359534, intron 2 of 6)	28645.0	NM_001359534	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32682571-4	chr11	32682105	32683105	+	812.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271347, intron 2 of 12)	intron (NM_001271347, intron 2 of 12)	40050.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118740136-4	chr11	118739633	118740633	+	812.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024931, intron 2 of 14)	intron (NM_001024931, intron 2 of 14)	20908.0	NM_001285438	52897.0	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101367452-4	chr4	101366973	101367973	+	812.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040640, intron 2 of 3)	intron (NR_040640, intron 2 of 3)	-11225.0	NR_040708	77866.0	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102425523-4	chr12	102424999	102425999	+	812.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	B3A|SINE|B2	14314.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	81.5	169.0	173.0	116.5	202.5	199.5
Merged-chr11-50364903-6	chr11	50364547	50365547	+	812.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7168.0	NR_030529	100049547.0		NR_030529	ENSMUSG00000076450	Mir804	Mirn804|mmu-mir-804	microRNA 804	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-59263823-4	chr3	59263312	59264312	+	812.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357008)	promoter-TSS (NM_001357008)	-827.0	NM_001357010	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	155.5	348.5	243.0	152.5	294.0	200.5
Merged-chr4-99928789-4	chr4	99928304	99929304	+	812.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028132)	promoter-TSS (NM_028132)	-647.0	NM_028132	72157.0	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-109210005-4	chr7	109209487	109210487	+	812.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-34780.0	NM_001302205	109594.0	Mm.360145	NM_057173	ENSMUSG00000036111	Lmo1	Rbtn-1|Rbtn1|Ttg1	LIM domain only 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74596124-3	chr15	74595610	74596610	+	812.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40208.0	NM_001177437	69439.0	Mm.263708	NM_001177437	ENSMUSG00000022603	Mroh4	1700016M24Rik	maestro heat-like repeat family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91757570-3	chr1	91757044	91758044	+	812.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43917.0	NM_007855	13345.0	Mm.9474	NM_007855	ENSMUSG00000007805	Twist2	Dermo1|bHLHa39	twist basic helix-loop-helix transcription factor 2	protein-coding	6.5	19.0	5.5	12.0	34.0	6.5
Merged-chr2-102829355-3	chr2	102828830	102829830	+	812.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039151, intron 5 of 8)	MERVL-int|LTR|ERVL	72335.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	5.5	3.0	1.0	0.0	0.5	0.0
Merged-chr14-118595615-3	chr14	118595113	118596113	+	812.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163676, intron 17 of 29)	intron (NM_001163676, intron 17 of 29)	-3141.0	NR_105815	102465208.0		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	0.0	0.0	1.0	0.0	0.0	7.0
Merged-chr11-87436443-3	chr11	87435920	87436920	+	812.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	8829.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7766808-3	chr9	7766320	7767320	+	812.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152989, intron 1 of 5)	intron (NR_152989, intron 1 of 5)	2655.0	NR_152989	71929.0	Mm.283293	NM_133739	ENSMUSG00000050912	Tmem123	2310075C12Rik	transmembrane protein 123	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102693092-4	chr15	102692582	102693582	+	812.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-21216.0	NR_030460	751542.0		NR_030460	ENSMUSG00000076009	Mir688	Mirn688|mmu-mir-688	microRNA 688	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57347941-4	chr17	57347444	57348444	+	812.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10742.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	28.0	79.0	51.0	26.5	78.0	55.0
Merged-chr12-24980333-8	chr12	24979817	24980817	+	812.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081378, intron 1 of 31)	(CAGG)n|Simple_repeat|Simple_repeat	5385.0	NM_001081378	77480.0	Mm.250641	NM_001081378	ENSMUSG00000036333	Kidins220	3110039L19Rik|AI194387|AI316525|C330002I19Rik|mKIAA1250	kinase D-interacting substrate 220	protein-coding	85.5	230.5	251.5	65.0	161.0	110.5
Merged-chr19-6919860-2	chr19	6919360	6920360	+	812.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_007953, intron 2 of 6)	ID_B1|SINE|B4	1948.0	NM_007953	26379.0	Mm.386776	NM_007953	ENSMUSG00000024955	Esrra	ERRalpha|Err1|Estrra|Nr3b1	estrogen related receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-36816127-3	chr19	36815647	36816647	+	812.844421	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18085.0	NM_001163635	74493.0	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	0.0	10.5	3.5	4.0	8.5	5.5
Merged-chr16-35765942-2	chr16	35765441	35766441	+	812.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	B4A|SINE|B4	3415.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	27.0	127.5	39.0	38.0	98.0	52.5
Merged-chr10-20717653-2	chr10	20717153	20718153	+	812.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 1 of 12)	intron (NM_013875, intron 1 of 12)	7425.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120849841-2	chr5	120849341	120850341	+	812.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_145153, intron 2 of 5)	intron (NM_145153, intron 2 of 5)	2474.0	NM_145153	243262.0	Mm.105369	NM_145153	ENSMUSG00000053765	Oas1f	-	2'-5' oligoadenylate synthetase 1F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53809041-4	chr11	53808521	53809521	+	812.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	38548.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133468760-2	chr4	133468282	133469282	+	812.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-11351.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	0.0	7.5	4.5	2.5	5.5	8.5
Merged-chr9-65001635-3	chr9	65001134	65002134	+	812.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021345, intron 5 of 10)	intron (NM_021345, intron 5 of 10)	20083.0	NM_021345	57874.0	Mm.308180	NM_021345	ENSMUSG00000033629	Hacd3	4930523M17Rik|AW742319|B-ind1|Hcad3|Hspc121|Ptplad1	3-hydroxyacyl-CoA dehydratase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-124682450-3	chr4	124681947	124682947	+	812.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026031, exon 5 of 8)	exon (NM_026031, exon 5 of 8)	11107.0	NM_026031	67205.0	Mm.259121	NM_026031	ENSMUSG00000028907	Utp11	2700082D03Rik|CGI-94|Cgi94|Utp11l	UTP11 small subunit processome component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10295990-2	chr19	10295490	10296490	+	812.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	8887.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	1.5	22.0	12.0	7.0	15.5	8.0
Merged-chr2-80062845-3	chr2	80062330	80063330	+	812.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	L1_Mus3|LINE|L1	-23928.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.0	1.0	1.5	7.0	0.0	0.0
Merged-chr3-53041298-4	chr3	53040776	53041776	+	812.80835	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175386)	promoter-TSS (NM_175386)	-271.0	NM_175386	108927.0	Mm.118617	NM_175386	ENSMUSG00000048332	Lhfp	2810489O06Rik|AI194968|Lhfpl6	lipoma HMGIC fusion partner	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98027967-1	chr13	98027467	98028467	+	812.799988	f0_balb.idr	intron (NM_012026, intron 9 of 35)	intron (NM_012026, intron 9 of 35)	178198.0	NM_012026	110596.0	Mm.252718	NM_012026	ENSMUSG00000021662	Arhgef28	9230110L08Rik|AI323540|D13Bwg1089e|RIP2|Rgnef|RhoGEF|Rhoip2|p190RhoGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr5-137858853-7	chr5	137858364	137859364	+	812.7976070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133209)	promoter-TSS (NM_133209)	-815.0	NM_133209	170741.0	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19305642-3	chr3	19305151	19306151	+	812.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122759, intron 1 of 12)	intron (NM_001122759, intron 1 of 12)	5671.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134704363-3	chr5	134703851	134704851	+	812.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007925, intron 36 of 36)	intron (NM_007925, intron 36 of 36)	-15761.0	NM_010717	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58697303-3	chr15	58696803	58697803	+	812.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY5_I-int|LTR|ERVK	126124.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52625123-3	chr13	52624688	52625688	+	812.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 7 of 13)	intron (NM_011518, intron 7 of 13)	28306.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52211746-4	chr6	52211245	52212245	+	812.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015611, intron 1 of 2)	CpG	1322.0	NM_010452	15400.0	Mm.71533	NM_010452	ENSMUSG00000079560	Hoxa3	Hox-1.5|Mo-10	homeobox A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108343577-4	chr9	108343109	108344109	+	812.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4222.0	NM_001311157	22258.0	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170509621-2	chr2	170509121	170510121	+	812.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_040367, intron 1 of 2)	intron (NR_040367, intron 1 of 2)	-1609.0	NM_001110152	109054.0	Mm.28808	NM_001013369	ENSMUSG00000052033	Pfdn4	0610025M10Rik|1810063B06Rik|C-1|C1|Pfd4	prefoldin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117790457-4	chr11	117789948	117790948	+	812.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195090, intron 10 of 15)	intron (NM_001195090, intron 10 of 15)	-7212.0	NM_029964	77727.0	Mm.159981	NM_029964	ENSMUSG00000025573	6030468B19Rik	Il-40	RIKEN cDNA 6030468B19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25372977-2	chr2	25372477	25373477	+	812.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001290407, exon 1 of 6)	exon (NM_001290407, exon 1 of 6)	942.0	NM_001081085	72080.0	Mm.250293	NM_001081085	ENSMUSG00000026955	Sapcd2	2010317E24Rik|6030458L21Rik|AL033337|ang	suppressor APC domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116277213-2	chr3	116276713	116277713	+	812.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001173553, intron 13 of 13)	intron (NM_001173553, intron 13 of 13)	-23729.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18046948-2	chr2	18046448	18047448	+	812.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_028317, exon 1 of 1)	exon (NM_028317, exon 1 of 1)	1501.0	NM_028317	72668.0	Mm.102183	NM_028317	ENSMUSG00000054074	Skida1	2810030E01Rik|5730507N06Rik|BB088113|DLN-1	SKI/DACH domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31154779-2	chr14	31154279	31155279	+	812.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_138672, intron 23 of 68)	intron (NM_138672, intron 23 of 68)	13862.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141635815-4	chr4	141635355	141636355	+	812.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 6 of 18)	intron (NM_001347237, intron 6 of 18)	-12021.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	0.0	3.0	5.5	3.0	3.0	4.0
Merged-chr10-80657355-2	chr10	80656855	80657855	+	812.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145361)	promoter-TSS (NM_145361)	-284.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117189497-4	chr4	117188950	117189950	+	812.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-6826.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	26.0	45.0	30.0	29.0	11.0	24.0
Merged-chr3-85542977-2	chr3	85542477	85543477	+	812.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-31152.0	NM_144896	229487.0	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-60835154-4	chr15	60834683	60835683	+	812.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-10103.0	NM_001162926	399603.0	Mm.411968	NM_207269	ENSMUSG00000072568	Fam84b	BF642811|D330050I23Rik	family with sequence similarity 84, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137118188-2	chr5	137117737	137118737	+	812.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2030.0	NM_201373	384309.0	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	1.0	2.0	0.5	1.5	8.0	1.0
Merged-chr11-18877912-5	chr11	18877500	18878500	+	812.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	140969.0	NM_001193271	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	3.5	0.0	0.0	3.5	0.0	0.0
Merged-chr9-106289060-3	chr9	106288557	106289557	+	812.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 6 of 10)	intron (NM_027354, intron 6 of 10)	7996.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	5.0	0.0	5.0	0.0	0.0	1.0
Merged-chr6-88043609-2	chr6	88043109	88044109	+	812.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293652, intron 1 of 7)	intron (NM_001293652, intron 1 of 7)	1408.0	NM_001293653	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154305639-3	chr2	154305152	154306152	+	812.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1592.0	NM_001025574	433492.0	Mm.330682	NM_001025574	ENSMUSG00000067996	Bpifb9b	5430413K10Rik|AI413838	BPI fold containing family B, member 9B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65305089-3	chr18	65304635	65305635	+	812.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001037294, exon 5 of 13)	exon (NM_001037294, exon 5 of 13)	56274.0	NR_029600	387231.0		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	0.0	0.0	0.0	2.0	1.0	0.5
Merged-chr10-76835851-3	chr10	76835315	76836315	+	812.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347216, intron 2 of 15)	intron (NM_001347216, intron 2 of 15)	-13003.0	NR_152849	59093.0	Mm.272803	NM_021568	ENSMUSG00000001120	Pcbp3	AlphaCP-3	poly(rC) binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34840690-2	chr18	34840190	34841190	+	812.666687	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001204914, exon 1 of 8)	5' UTR (NM_001204914, exon 1 of 8)	101.0	NM_144865	225362.0	Mm.293588	NM_144865	ENSMUSG00000038555	Reep2	-	receptor accessory protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62556381-1	chr11	62555881	62556881	+	812.666687	f0_balb.idr	Intergenic	URR1B|DNA|hAT-Charlie	4650.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122601001-3	chr10	122600498	122601498	+	812.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31107.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	3.0	0.0	5.5	5.0	2.5	2.0
Merged-chr3-68798600-3	chr3	68798068	68799068	+	812.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44C|LTR|ERVK	37073.0	NR_153374	102639225.0	Mm.109095	NR_153374	ENSMUSG00000102936	Gm35584	-	predicted gene, 35584	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32095542-4	chr2	32095051	32096051	+	812.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145521)	promoter-TSS (NM_145521)	23.0	NM_001355238	227721.0	Mm.257236	NM_145521	ENSMUSG00000051373	Plpp7	D830019K17Rik|NET39|Ppapdc3	phospholipid phosphatase 7 (inactive)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-20454862-1	chr1	20454362	20455362	+	812.666687	f0_balb.idr	intron (NM_153179, intron 35 of 66)	intron (NM_153179, intron 35 of 66)	98408.0	NR_045734	75028.0	Mm.417820	NR_045734	ENSMUSG00000089914	4930486I03Rik	-	RIKEN cDNA 4930486I03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6240994-2	chr19	6240494	6241494	+	812.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194348)	promoter-TSS (NM_194348)	-674.0	NM_194348	329015.0	Mm.277384	NM_194348	ENSMUSG00000024773	Atg2a	1810013C15Rik|A830054M12|BC023754|mKIAA0404	autophagy related 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8164126-3	chr17	8163635	8164635	+	812.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1383.0	NM_001197046	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79193669-3	chr12	79193167	79194167	+	812.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MURVY-int|LTR|ERV1	-1812.0	NM_021557	17252.0	Mm.291799	NM_021557	ENSMUSG00000066441	Rdh11	2610319N22Rik|AI428145|AU045252|Arsdr1|C85936|CGI-82|HCBP12|M42C60|Mdt1|Psdr1|SCALD|UBE-1c1|Ube-1c|ralR1	retinol dehydrogenase 11	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr14-101943149-2	chr14	101942649	101943649	+	812.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102526.0	NM_001347628	380928.0	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85164578-2	chr11	85164078	85165078	+	812.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD3|LINE|L1	-6518.0	NM_028589	73634.0	Mm.48850	NM_028589	ENSMUSG00000018479	1700125H20Rik	-	RIKEN cDNA 1700125H20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127084825-2	chr2	127084325	127085325	+	812.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026678, intron 3 of 7)	intron (NM_026678, intron 3 of 7)	14168.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	8.5	12.5	17.5	7.5	19.0	24.0
Merged-chr7-110843539-2	chr7	110843039	110844039	+	812.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_025999, intron 1 of 5)	intron (NM_025999, intron 1 of 5)	842.0	NM_025999	67150.0	Mm.96867	NM_025999	ENSMUSG00000030788	Rnf141	2610110L04Rik|AA792898|AU022812|ZFP36|ZNF230	ring finger protein 141	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70620363-2	chr8	70619863	70620863	+	812.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_153074, intron 2 of 2)	intron (NM_153074, intron 2 of 2)	3519.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	10.5	26.5	18.0	6.5	4.0	13.5
Merged-chr11-107304724-2	chr11	107304224	107305224	+	812.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	intron (NR_153311, intron 4 of 9)	-115343.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103374268-4	chr3	103373768	103374768	+	812.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	94975.0	NM_053170	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	0.0	5.0	3.0	2.5	3.0	1.5
Merged-chr17-36043963-2	chr17	36043463	36044463	+	812.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034909, intron 1 of 2)	intron (NM_001034909, intron 1 of 2)	1002.0	NM_001034909	547347.0	Mm.484641	NM_001034909	ENSMUSG00000073407	Gm6034	EG547347|H2-gs14-2	predicted gene 6034	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80329843-4	chr12	80329331	80330331	+	812.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61846.0	NR_037207	100526530.0		NR_037207	ENSMUSG00000105972	Mir1843a	Mir1843|mir-1843a|mmu-mir-1843|mmu-mir-1843a	microRNA 1843a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124802908-2	chr6	124802408	124803408	+	812.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-5753.0	NM_001306051	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-34674407-4	chr12	34673909	34674909	+	812.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	B4|SINE|B4	-145520.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	20.5	63.5	33.0	15.0	34.5	20.5
Merged-chr7-19813727-4	chr7	19813241	19814241	+	812.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033601, intron 2 of 8)	intron (NM_033601, intron 2 of 8)	9014.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60618915-2	chr13	60618415	60619415	+	812.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	16704.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128065228-2	chr8	128064690	128065690	+	812.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	213035.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	3.0	10.5	4.0	0.0	0.0	1.0
Merged-chr9-111604217-3	chr9	111603723	111604723	+	812.599976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016853, intron 4 of 10)	intron (NM_016853, intron 4 of 10)	86125.0	NM_016853	20840.0	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding	3.0	6.0	9.0	0.0	2.0	0.0
Merged-chr19-40965423-3	chr19	40964922	40965922	+	812.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008528, intron 3 of 16)	intron (NM_008528, intron 3 of 16)	29113.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	9.5	5.5	8.5	7.0	0.0	5.0
Merged-chr1-14820077-3	chr1	14819606	14820606	+	812.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-64140.0	NM_010827	17681.0	Mm.5820	NM_010827	ENSMUSG00000025930	Msc	MyoR|bHLHa22	musculin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35540210-4	chr18	35539714	35540714	+	812.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13196.0	NR_038073	100503380.0	Mm.482118	NR_038073	ENSMUSG00000097769	Snhg4	Gm17457	small nucleolar RNA host gene 4	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98024607-2	chr11	98024107	98025107	+	812.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1980.0	NM_001282978	12295.0	Mm.41252	NM_031173	ENSMUSG00000020882	Cacnb1	CAB1|Cchb1|Cchlb1	calcium channel, voltage-dependent, beta 1 subunit	protein-coding	2.0	21.0	4.5	2.0	17.5	6.5
Merged-chr11-43363146-4	chr11	43362650	43363650	+	812.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	11311.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41306342-2	chr4	41305842	41306842	+	812.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026893, intron 2 of 8)	B1_Mus1|SINE|Alu	8559.0	NM_026893	68970.0	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-35886479-2	chr13	35885979	35886979	+	812.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19868.0	NM_145938	208366.0	Mm.35545	NM_145938	ENSMUSG00000021418	Rpp40	D8Bwg1265e|Rnasep1	ribonuclease P 40 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128481016-2	chr6	128480516	128481516	+	812.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_028593, intron 2 of 4)	intron (NR_028593, intron 2 of 4)	42259.0	NR_028593	791299.0	Mm.297516	NR_028592	ENSMUSG00000059659	Gm10069	-	predicted gene 10069	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43781585-2	chr7	43781085	43782085	+	812.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133712, exon 2 of 6)	exon (NM_133712, exon 2 of 6)	531.0	NM_133712	69540.0	Mm.46421	NM_133712	ENSMUSG00000030693	Klk10	2300002A13Rik|NES1|PRSSL1	kallikrein related-peptidase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136518700-2	chr4	136518200	136519200	+	812.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024452, intron 1 of 4)	L2a|LINE|L2	48939.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	0.0	0.0	3.5	0.0	4.0	7.0
Merged-chr5-142934669-2	chr5	142934169	142935169	+	812.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25686.0	NM_007984	14086.0	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125529517-2	chr6	125529017	125530017	+	812.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23431.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108992531-2	chr9	108992031	108993031	+	812.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 1 of 13)	intron (NR_153430, intron 1 of 13)	629.0	NR_153430	270198.0	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110858010-2	chr9	110857510	110858510	+	812.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146227)	promoter-TSS (NM_146227)	43.0	NM_146227	235631.0	Mm.102265	NM_146227	ENSMUSG00000048752	Prss50	79H19C|Tsp50	protease, serine 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-15759881-2	chr13	15759381	15760381	+	812.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42749.0	NR_045507	71071.0	Mm.380845	NR_045507	ENSMUSG00000113960	4933412O06Rik	-	RIKEN cDNA 4933412O06 gene	ncRNA	0.0	0.0	3.0	0.0	0.0	3.0
Merged-chr19-34685053-1	chr19	34684553	34685553	+	812.5	f0_balb.idr	intron (NM_172838, intron 2 of 6)	intron (NM_172838, intron 2 of 6)	44164.0	NM_008331	15957.0	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	7.0	5.0	0.0	4.5	4.0	6.0
Merged-chr6-48428991-2	chr6	48428377	48429377	+	812.5	f0_balb.idr|f1_balb.idr	intron (NM_001085417, intron 4 of 4)	intron (NM_001085417, intron 4 of 4)	16213.0	NM_001085415	68910.0	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	0.0	2.5	0.0	9.0	6.0	5.5
Merged-chr12-85462887-3	chr12	85462348	85463348	+	812.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11042.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-85513569-2	chr6	85513069	85514069	+	812.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020596)	promoter-TSS (NM_020596)	20.0	NM_020596	13656.0	Mm.44137	NM_020596	ENSMUSG00000071341	Egr4	NGF1-C|NGFI-C|NGFIC|pAT133	early growth response 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81325718-2	chr10	81325218	81326218	+	812.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_027381, exon 9 of 9)	exon (NM_027381, exon 9 of 9)	-2550.0	NM_001358512	21390.0	Mm.4545	NM_009325	ENSMUSG00000034881	Tbxa2r	TP|TXA2-R	thromboxane A2 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-75406499-2	chr9	75405999	75406999	+	812.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015806, intron 1 of 5)	intron (NM_015806, intron 1 of 5)	2860.0	NM_027418	50772.0	Mm.480076	NM_015806	ENSMUSG00000042688	Mapk6	2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6	mitogen-activated protein kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-37439985-2	chr6	37439485	37440485	+	812.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	2163.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11571028-2	chr2	11570528	11571528	+	812.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17099.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-119399223-2	chr12	119398724	119399724	+	812.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44186.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	6.5	2.0	2.5	0.0	1.5	0.0
Merged-chr7-90476857-1	chr7	90476357	90477357	+	812.5	f0_balb.idr	promoter-TSS (NM_026734)	promoter-TSS (NM_026734)	-862.0	NM_026734	68472.0	Mm.289791	NM_026734	ENSMUSG00000030614	Tmem126b	1110001A23Rik	transmembrane protein 126B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32748851-2	chr5	32748378	32749378	+	812.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177298, intron 3 of 7)	intron (NM_177298, intron 3 of 7)	-2536.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	8.5	4.5	4.0	7.0	5.5	11.0
Merged-chr16-91486247-2	chr16	91485747	91486747	+	812.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010508, intron 1 of 10)	intron (NM_010508, intron 1 of 10)	1032.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71366080-2	chr8	71365580	71366580	+	812.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145780)	promoter-TSS (NM_001145780)	-768.0	NM_001145780	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	5.5	6.0	4.5	5.5	0.0	3.0
Merged-chr19-5600480-2	chr19	5599980	5600980	+	812.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1393.0	NM_026616	68209.0	Mm.246200	NM_026616	ENSMUSG00000024925	Rnaseh2c	1500026D16Rik|AYP1	ribonuclease H2, subunit C	protein-coding	1.5	0.0	3.0	0.0	0.0	1.0
Merged-chr5-33379618-2	chr5	33379118	33380118	+	812.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153108, intron 2 of 12)	intron (NR_153108, intron 2 of 12)	922.0	NM_001081101	71101.0	Mm.132178	NM_027674	ENSMUSG00000037355	Uvssa	4933407H18Rik|D330017J19Rik|Kiaa1530|mKIAA1530	UV stimulated scaffold protein A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53140552-3	chr19	53140041	53141041	+	812.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164099)	promoter-TSS (NM_001164099)	98.0	NM_001164101	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-124275646-1	chr9	124275146	124276146	+	812.5	f0_c57.idr	Intergenic	RMER6A|LTR|ERVK	37048.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139362405-2	chr5	139361905	139362905	+	812.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 3 of 4)	intron (NM_028469, intron 3 of 4)	7340.0	NR_029768	723898.0		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-117196067-2	chr13	117195567	117196567	+	812.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24506.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43837664-2	chr5	43837164	43838164	+	812.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009763, intron 7 of 8)	intron (NM_009763, intron 7 of 8)	18771.0	NM_009763	12182.0	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	9.5	5.0	0.5	10.5	3.0	0.5
Merged-chr4-129671656-4	chr4	129671179	129672179	+	812.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008468, intron 1 of 13)	intron (NM_008468, intron 1 of 13)	1088.0	NM_008468	16650.0	Mm.202358	NM_008468	ENSMUSG00000003731	Kpna6	IPOA7|Kpna5|NPI-2	karyopherin (importin) alpha 6	protein-coding	38.5	68.5	51.0	30.0	54.5	28.5
Merged-chr16-92445615-4	chr16	92445113	92446113	+	812.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	B3A|SINE|B2	20556.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172520626-2	chr1	172520126	172521126	+	812.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027972)	promoter-TSS (NM_027972)	-504.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	0.0	3.5	0.5	2.0	0.0	1.5
Merged-chr6-100191395-4	chr6	100190904	100191904	+	812.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	95954.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122629744-4	chr3	122629193	122630193	+	812.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9979.0	NM_001114665	214459.0	Mm.209491	NM_153118	ENSMUSG00000039735	Fnbp1l	2610318I01Rik|AW548221|TOCA1|toca-1	formin binding protein 1-like	protein-coding	4.0	13.0	23.0	4.0	5.0	1.5
Merged-chr3-107204335-3	chr3	107203866	107204866	+	812.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	17366.0	NM_001111143	229697.0	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	12.5	9.0	4.0	3.0	7.5	4.5
Merged-chr9-21261963-3	chr9	21261475	21262475	+	812.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger5|DNA|TcMar-Tigger	-3310.0	NM_153583	235040.0	Mm.440165	NM_153583	ENSMUSG00000002820	Atg4d	9830134P12Rik|APG4-D|Apg4d|Atg4dl|Autl4	autophagy related 4D, cysteine peptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-119080733-2	chr10	119080233	119081233	+	812.416687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12172.0	NR_045348	73400.0	Mm.416864	NR_045348	ENSMUSG00000100681	1700064J06Rik	-	RIKEN cDNA 1700064J06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-48615924-4	chr2	48615416	48616416	+	812.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-198193.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-124659868-2	chr4	124659368	124660368	+	812.333374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011141, exon 1 of 1)	3' UTR (NM_011141, exon 1 of 1)	2222.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127582606-2	chr10	127582133	127583133	+	812.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 19 of 88)	intron (NM_008512, intron 19 of 88)	38515.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0.0	1.5	1.5	0.0	2.5	4.0
Merged-chr5-35131955-2	chr5	35131455	35132455	+	812.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26258.0	NM_013587	16976.0	Mm.277661	NM_013587	ENSMUSG00000029103	Lrpap1	AA617339|AI790446|AU042172|C77774|HBP44|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56801120-3	chr19	56800615	56801615	+	812.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170757, intron 7 of 14)	intron (NM_170757, intron 7 of 14)	12568.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25324172-3	chr10	25323690	25324690	+	812.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-25027.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	4.5	2.0	7.0	5.0	2.5	3.0
Merged-chr8-117337313-2	chr8	117336813	117337813	+	812.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-11857.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125278461-1	chr8	125277961	125278961	+	812.333313	f0_balb.idr	Intergenic	Intergenic	214372.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	7.5	6.0	0.5	11.5	10.5	1.5
Merged-chr7-43659293-3	chr7	43658760	43659760	+	812.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_031181, exon 2 of 7)	exon (NM_031181, exon 2 of 7)	901.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44418807-4	chr13	44418226	44419226	+	812.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21001.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	20.0	12.5	1.5	10.0	0.0	3.5
Merged-chr5-24387863-3	chr5	24387302	24388302	+	812.288879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001002897, exon 6 of 14)	exon (NM_001002897, exon 6 of 14)	4341.0	NM_001002897	213948.0	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100429160-3	chr12	100428645	100429645	+	812.288879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 5 of 19)	intron (NM_001033213, intron 5 of 19)	91677.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-47194917-3	chr13	47194407	47195407	+	812.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170643, intron 1 of 7)	intron (NM_001170643, intron 1 of 7)	904.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102395224-4	chr15	102394739	102395739	+	812.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11077.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100682502-2	chr15	100682048	100683048	+	812.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_033612, intron 5 of 7)	intron (NM_033612, intron 5 of 7)	5372.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	1.5	2.0	6.0	0.0	9.0	4.5
Merged-chr5-135912627-4	chr5	135912137	135913137	+	812.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018871, intron 1 of 1)	B1_Mur2|SINE|Alu	22004.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116430476-2	chr11	116429988	116430988	+	812.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-3606.0	NM_176902	319370.0	Mm.258466	NM_176902	ENSMUSG00000050628	Ubald2	1110014K08Rik|D030012E24Rik|Fam100b	UBA-like domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86292293-2	chr15	86291793	86292793	+	812.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358062, intron 2 of 9)	intron (NM_001358062, intron 2 of 9)	14618.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69124644-4	chr11	69124169	69125169	+	812.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Gln-CAG|tRNA|tRNA	-1708.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	14.0	44.5	27.5	11.5	34.0	7.0
Merged-chr19-58194055-4	chr19	58193563	58194563	+	812.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102141.0	NR_040449	791347.0	Mm.452208	NR_040449		Gm10007	-	predicted gene 10007	ncRNA	0.0	1.5	1.5	4.0	0.5	3.0
Merged-chr16-52149534-4	chr16	52148987	52149987	+	812.238098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 9 of 17)	intron (NM_001033238, intron 9 of 17)	117938.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-48775617-4	chr7	48775081	48776081	+	812.233337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13422.0	NM_028031	243983.0	Mm.279116	NM_028031	ENSMUSG00000030471	Zdhhc13	2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4	zinc finger, DHHC domain containing 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120612815-4	chr11	120612341	120613341	+	812.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347615, intron 6 of 12)	intron (NM_001347615, intron 6 of 12)	4364.0	NM_001347616	208990.0	Mm.29444	NM_153288	ENSMUSG00000044034	Npb	PPL7|mPPL7	neuropeptide B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-14893628-3	chr9	14893130	14894130	+	812.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176807, intron 4 of 4)	MTEb|LTR|ERVL-MaLR	10321.0	NM_176807	64931.0	Mm.86738	NM_022888	ENSMUSG00000031933	Izumo1r	0910001L11Rik|C86255|Folbp3|Folr4|Juno	IZUMO1 receptor, JUNO	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39649953-2	chr18	39649453	39650453	+	812.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123544.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-156183986-3	chr4	156183504	156184504	+	812.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021604, intron 3 of 35)	intron (NM_021604, intron 3 of 35)	13484.0	NM_021604	11603.0	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-33084365-4	chr13	33083827	33084827	+	812.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173052, intron 1 of 6)	intron (NM_173052, intron 1 of 6)	224.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62219415-2	chr15	62218891	62219891	+	812.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003523)	promoter-TSS (NR_003523)	60.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	1.5	1.0	0.0	0.0	0.0	3.0
Merged-chr6-118137319-4	chr6	118136826	118137826	+	812.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030165, intron 1 of 7)	intron (NM_030165, intron 1 of 7)	1504.0	NM_001362149	78752.0	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80822541-2	chr10	80822041	80823041	+	812.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-4115.0	NM_001301034	18245.0	Mm.398119	NM_008753	ENSMUSG00000035242	Oaz1	AZ-1|AZ1|Antizyme|ODC-Az|Oaz	ornithine decarboxylase antizyme 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78148699-2	chr10	78148199	78149199	+	812.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21069.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-105808537-4	chr7	105808038	105809038	+	812.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025301, exon 3 of 3)	3' UTR (NM_025301, exon 3 of 3)	2549.0	NM_025301	27397.0	Mm.44225	NM_025301	ENSMUSG00000030879	Mrpl17	MRP-L26|Rpml26	mitochondrial ribosomal protein L17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-27369970-2	chr10	27369460	27370460	+	812.150024	f0_balb.idr|f1_balb.idr	intron (NM_008481, intron 4 of 63)	Lx8b|LINE|L1	-19906.0	NR_131034	75855.0	Mm.402080	NR_131034	ENSMUSG00000101636	4930579H20Rik	-	RIKEN cDNA 4930579H20 gene	ncRNA	0.0	0.0	0.0	2.0	2.0	2.5
Merged-chr11-70608777-3	chr11	70608269	70609269	+	812.133362	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045964, intron 18 of 32)	intron (NM_001045964, intron 18 of 32)	-7125.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81387908-2	chr10	81387408	81388408	+	812.125	f1_balb.idr|f1_c57bl6.idr	exon (NM_133964, exon 5 of 5)	exon (NM_133964, exon 5 of 5)	1561.0	NR_105878	102466763.0		NR_105878	ENSMUSG00000098811	Mir6913	Gm27788|mmu-mir-6913	microRNA 6913	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75064801-4	chr14	75064306	75065306	+	812.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	48779.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59969549-3	chr9	59969065	59970065	+	812.116638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001040426, exon 18 of 18)	3' UTR (NM_001040426, exon 18 of 18)	18271.0	NM_001101600	665389.0	Mm.335214	NM_001101600		Gm7616	EG665389	predicted gene 7616	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45591872-3	chr17	45591378	45592378	+	812.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199113, intron 3 of 13)	intron (NM_001199113, intron 3 of 13)	515.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32073531-3	chr17	32073017	32074017	+	812.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17906.0	NR_027316	435518.0	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	0.0	0.5	2.0	0.0	0.5	2.0
Merged-chr11-30196014-3	chr11	30195510	30196510	+	812.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175836, intron 1 of 34)	intron (NM_175836, intron 1 of 34)	2247.0	NM_009260	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	7.0	23.5	14.5	12.5	15.0	29.0
Merged-chr2-10374128-3	chr2	10373614	10374614	+	812.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177386, intron 1 of 22)	CpG	1678.0	NM_177386	353282.0	Mm.329991	NM_177386	ENSMUSG00000061186	Sfmbt2	D2Wsu23e|D330030P06Rik	Scm-like with four mbt domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62726073-3	chr10	62725568	62726568	+	812.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033260)	promoter-TSS (NM_001033260)	31.0	NM_001033260	216021.0	Mm.39821	NM_001033260	ENSMUSG00000036923	Stox1	4732470K04Rik|Gm63	storkhead box 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123633968-3	chr4	123633469	123634469	+	812.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	17549.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191151252-3	chr1	191150738	191151738	+	812.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	13579.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145309071-4	chr7	145308549	145309549	+	812.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145379, exon 3 of 3)	3' UTR (NM_145379, exon 3 of 3)	-5786.0	NM_203490	211578.0	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38434165-4	chr18	38433627	38434627	+	812.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	RMER6A|LTR|ERVK	15220.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12741359-4	chr17	12740944	12741944	+	812.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027773, intron 1 of 2)	CpG	133.0	NR_027784	104103.0	Mm.26553	NR_002853	ENSMUSG00000078247	Airn	2810051F02Rik|2810434M15Rik|AI256653|AI597500|AW049873|Air|B930018I07Rik|D17Ertd663e|IGF2RAS	antisense Igf2r RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86167288-3	chr15	86166816	86167816	+	812.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-18412.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-9013103-1	chr10	9012603	9013603	+	812.0	f1_c57bl6.idr	Intergenic	Intergenic	-127033.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.0	2.0	0.0	0.0	0.0	0.0
Merged-chr14-54913101-1	chr14	54912601	54913601	+	812.0	f0_balb.idr	promoter-TSS (NM_001360406)	promoter-TSS (NM_001360406)	31.0	NM_001360406	59049.0	Mm.27435	NM_021551	ENSMUSG00000022199	Slc22a17	1700094C23Rik|24p3R|AU041908|AW555662|BOIT|Boct	solute carrier family 22 (organic cation transporter), member 17	protein-coding	0.0	0.0	0.5	12.5	7.5	0.0
Merged-chr2-3420717-2	chr2	3420217	3421217	+	812.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355205, intron 1 of 3)	(TCTG)n|Simple_repeat|Simple_repeat	-1588.0	NM_001355209	104362.0	Mm.2688	NM_008579	ENSMUSG00000026650	Meig1	MLZ-278|Meg1	meiosis expressed gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38087460-2	chr16	38086949	38087949	+	812.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033221, exon 1 of 1)	non-coding (NR_033221, exon 1 of 1)	-1552.0	NM_001347232	56637.0	Mm.394930	NM_019827	ENSMUSG00000022812	Gsk3b	7330414F15Rik|8430431H08Rik|C86142|GSK-3|GSK-3beta|GSK3	glycogen synthase kinase 3 beta	protein-coding	1.0	7.0	5.0	0.0	10.5	5.5
Merged-chr4-41708531-3	chr4	41708034	41709034	+	812.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4983.0	NM_027278	69961.0	Mm.425182	NM_027278	ENSMUSG00000036114	Rpp25l	2810432D09Rik|AW987258|Rppl25	ribonuclease P/MRP 25 subunit-like	protein-coding	0.0	1.5	2.5	0.5	0.0	0.5
Merged-chr10-93376945-1	chr10	93376445	93377445	+	812.0	f0_balb.idr	Intergenic	Intergenic	40734.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	0.0	3.0	1.0	14.0	16.5	21.5
Merged-chr6-116071121-2	chr6	116070621	116071621	+	812.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	-76116.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-138486921-2	chr3	138486444	138487444	+	812.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175224, intron 1 of 10)	intron (NM_175224, intron 1 of 10)	2438.0	NM_175224	75624.0	Mm.26833	NM_175224	ENSMUSG00000005813	Metap1	1700029C17Rik|AW047992|mKIAA0094	methionyl aminopeptidase 1	protein-coding	1.0	0.0	6.5	1.5	9.5	4.0
Merged-chr5-76249274-2	chr5	76248774	76249774	+	812.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007715, intron 8 of 22)	intron (NM_007715, intron 8 of 22)	54228.0	NM_001305222	12753.0	Mm.3552	NM_007715	ENSMUSG00000029238	Clock	5330400M04Rik|KAT13D	circadian locomotor output cycles kaput	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138848842-3	chr1	138848307	138849307	+	812.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1228.0	NM_010714	16876.0	Mm.250732	NM_010714	ENSMUSG00000019230	Lhx9	3110009O07Rik|BB104635|LH2B	LIM homeobox protein 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107693911-2	chr9	107693411	107694411	+	812.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011349, intron 2 of 17)	intron (NM_011349, intron 2 of 17)	11680.0	NM_001311151	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67264282-4	chr5	67263798	67264798	+	812.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028975, exon 4 of 8)	exon (NM_028975, exon 4 of 8)	3733.0	NM_030108	67878.0	Mm.23217	NM_028975	ENSMUSG00000037720	Tmem33	1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83	transmembrane protein 33	protein-coding	7.0	1.5	6.0	5.0	4.5	4.5
Merged-chr1-64375570-2	chr1	64375070	64376070	+	812.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157234.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-105295557-1	chr14	105295057	105296057	+	812.0	f1_balb.idr	intron (NM_029561, intron 4 of 7)	intron (NM_029561, intron 4 of 7)	36884.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	0.0	0.5	6.0	0.0	1.0	7.0
Merged-chr3-88331486-3	chr3	88330982	88331982	+	812.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024246, intron 3 of 3)	intron (NM_024246, intron 3 of 3)	2951.0	NM_024246	71913.0	Mm.34256	NM_024246	ENSMUSG00000001420	Tmem79	2310042N02Rik|2310074C17Rik|Matt|ma	transmembrane protein 79	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-127214377-3	chr1	127213809	127214809	+	812.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	B4A|SINE|B4	9323.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.5	20.5	10.0	0.0	13.0	5.5
Merged-chr14-79557198-2	chr14	79556698	79557698	+	812.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 2 of 8)	B4A|SINE|B4	-30462.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106329931-3	chr11	106329443	106330443	+	812.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133199, intron 14 of 23)	intron (NM_133199, intron 14 of 23)	-15381.0	NM_001313939	15985.0	Mm.2987	NM_008339	ENSMUSG00000040592	Cd79b	B29|Ig-beta|Igb|Igbeta	CD79B antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7780239-3	chr10	7779754	7780754	+	812.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145418, intron 1 of 7)	intron (NM_145418, intron 1 of 7)	663.0	NM_145418	215751.0	Mm.471825	NM_145418	ENSMUSG00000040006	Ginm1	AA589616	glycoprotein integral membrane 1	protein-coding	0.5	10.5	9.0	9.5	2.0	7.0
Merged-chr11-74492758-2	chr11	74492258	74493258	+	812.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	97400.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-3010342-1	chr18	3009842	3010842	+	812.0	f0_balb.idr	Intergenic	Intergenic	113070.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122845857-2	chr6	122845357	122846357	+	812.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_021899)	TTS (NM_021899)	10300.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-20025714-3	chr3	20025206	20026206	+	812.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 5 of 16)	intron (NM_080634, intron 5 of 16)	9604.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20081340-2	chr14	20080840	20081840	+	812.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026209, intron 1 of 1)	intron (NM_026209, intron 1 of 1)	1832.0	NM_026209	67509.0	Mm.292423	NM_026209	ENSMUSG00000045107	Saysd1	1810063B07Rik|4930488P03Rik	SAYSVFN motif domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65523576-4	chr3	65523080	65524080	+	812.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4867.0	NM_178892	99929.0	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding	0.0	0.0	0.0	6.0	1.0	1.0
Merged-chr2-164804318-2	chr2	164803818	164804818	+	812.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178375)	promoter-TSS (NM_178375)	563.0	NM_133240	170789.0	Mm.277878	NM_133240	ENSMUSG00000017307	Acot8	PTE-2|Pte1	acyl-CoA thioesterase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152619069-2	chr1	152618569	152619569	+	812.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	6148.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62192628-2	chr18	62192128	62193128	+	812.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12528.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	8.5	47.0	57.5	35.5	76.5	49.0
Merged-chr10-34717593-2	chr10	34717093	34718093	+	812.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	234193.0	NM_010237	14302.0	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94811181-2	chr8	94810681	94811681	+	812.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011332, intron 1 of 2)	intron (NM_011332, intron 1 of 2)	728.0	NM_011332	20295.0	Mm.41988	NM_011332	ENSMUSG00000031780	Ccl17	Abcd-2|Scya17|Scya17l|Tarc	chemokine (C-C motif) ligand 17	protein-coding	3.5	2.5	3.0	13.0	6.0	4.5
Merged-chr18-54916048-1	chr18	54915548	54916548	+	812.0	f0_balb.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	74132.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124002512-2	chr5	124002012	124003012	+	812.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145070, exon 32 of 32)	3' UTR (NM_145070, exon 32 of 32)	5660.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-12292361-2	chr12	12291861	12292861	+	812.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	30222.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	6.5	6.5	6.5	6.5	6.5	4.0
Merged-chr7-99500394-3	chr7	99499893	99500893	+	812.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16684.0	NM_012052	27050.0	Mm.236868	NM_012052	ENSMUSG00000030744	Rps3	D7Ertd795e|Rs_3	ribosomal protein S3	protein-coding	0.0	17.0	1.0	0.0	4.5	0.0
Merged-chr5-115561207-2	chr5	115560706	115561706	+	812.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007475, exon 4 of 7)	exon (NM_007475, exon 4 of 7)	1739.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	11.0	31.5	9.5	8.5	27.0	21.5
Merged-chr8-106336744-2	chr8	106336244	106337244	+	812.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_126090)	TTS (NR_126090)	1244.0	NM_021491	58994.0	Mm.23298	NM_021491	ENSMUSG00000031906	Smpd3	4631433G07Rik|AI427456|AW537966|fro|nSMase2	sphingomyelin phosphodiesterase 3, neutral	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87748111-2	chr11	87747611	87748611	+	812.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8753.0	NR_029555	387160.0		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	20.5	31.0	18.0	12.0	38.5	13.0
Merged-chr3-152461656-1	chr3	152461156	152462156	+	812.0	f0_c57.idr	3' UTR (NM_001346655, exon 13 of 13)	3' UTR (NM_001346655, exon 13 of 13)	64972.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	1.5	32.0	6.0	1.0	20.0	3.5
Merged-chr2-132144706-2	chr2	132144206	132145206	+	812.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	CpG	402.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-9548558-2	chr14	9548058	9549058	+	812.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-335537.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124735973-2	chr2	124735473	124736473	+	812.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	82392.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17892686-2	chr16	17892186	17893186	+	812.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010048)	promoter-TSS (NM_010048)	-958.0	NM_001109750	13356.0	Mm.254515	NM_010048	ENSMUSG00000003166	Dgcr2	9930034O06Rik|DGS-C|Dgsc|Idd|Lan|Sez12|mKIAA0163	DiGeorge syndrome critical region gene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31056493-2	chr2	31055993	31056993	+	812.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 7 of 15)	MTE2b|LTR|ERVL-MaLR	40007.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-69088659-3	chr14	69088159	69089159	+	812.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59370.0	NM_009285	20855.0	Mm.20911	NM_009285	ENSMUSG00000014813	Stc1	Stc	stanniocalcin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5787306-4	chr13	5786806	5787806	+	812.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70786.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-71008023-3	chr12	71007531	71008531	+	812.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045055, intron 3 of 3)	intron (NR_045055, intron 3 of 3)	7792.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-38123408-2	chr7	38122908	38123908	+	812.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15918.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	0.0	0.0	0.5	0.0	7.0	3.0
Merged-chr7-99957607-3	chr7	99957105	99958105	+	812.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175388, intron 1 of 5)	intron (NM_175388, intron 1 of 5)	22853.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25446032-3	chr15	25445544	25446544	+	811.988892	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027376, intron 1 of 1)	intron (NR_027376, intron 1 of 1)	31852.0	NR_027376	432939.0	Mm.146555	NM_001013791		Gm5468	100040583|EG432939	predicted gene 5468	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46488740-3	chr19	46488223	46489223	+	811.972229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_015752)	TTS (NM_015752)	-12925.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76580900-3	chr12	76580427	76581427	+	811.9523929999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013675, exon 36 of 36)	3' UTR (NM_013675, exon 36 of 36)	-33002.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-9266113-6	chr5	9265624	9266624	+	811.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359887)	promoter-TSS (NM_001359887)	6.0	NM_001359887	231014.0	Mm.130063	NM_172706	ENSMUSG00000056004	9330182L06Rik	Eig121l	RIKEN cDNA 9330182L06 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3776766-9	chr4	3776252	3777252	+	811.9198610000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	58903.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	17.0	21.5	14.0	20.0	5.5	6.0
Merged-chr11-3998128-4	chr11	3997623	3998623	+	811.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001177703, exon 3 of 3)	exon (NM_001177703, exon 3 of 3)	8190.0	NM_001177691	53897.0	Mm.103414	NM_016922	ENSMUSG00000049721	Gal3st1	Cst|Gcst	galactose-3-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-89988992-3	chr9	89988473	89989473	+	811.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357743, intron 13 of 26)	intron (NM_001357743, intron 13 of 26)	-65294.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	0.5	0.0	0.0	0.0	0.5	1.0
Merged-chr11-101642509-2	chr11	101642009	101643009	+	811.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14560.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23968004-5	chr17	23967515	23968515	+	811.900024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7215.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	25.0	72.0	38.5	15.5	7.5	2.5
Merged-chr17-24583858-3	chr17	24583370	24584370	+	811.894409	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013630, intron 26 of 45)	Lx5c|LINE|L1	33920.0	NM_013630	18763.0	Mm.30435	NM_013630	ENSMUSG00000032855	Pkd1	PC1|mFLJ00285	polycystin 1, transient receptor poteintial channel interacting	protein-coding	3.0	10.5	11.5	5.5	3.0	14.0
Merged-chr2-24927171-3	chr2	24926696	24927696	+	811.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178408, intron 2 of 7)	intron (NM_178408, intron 2 of 7)	-7587.0	NM_001109686	77683.0	Mm.24176	NM_172545	ENSMUSG00000036893	Ehmt1	9230102N17Rik|D330003E03|Eu-HMTase1|GLP|GLP1|KMT1D|mKIAA1876	euchromatic histone methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153910072-3	chr1	153909531	153910531	+	811.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008131)	TTS (NM_008131)	10102.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95529671-3	chr10	95529200	95530200	+	811.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080560, intron 1 of 3)	intron (NM_080560, intron 1 of 3)	14538.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150869664-3	chr2	150869137	150870137	+	811.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 1 of 12)	intron (NR_151505, intron 1 of 12)	-27067.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49088233-5	chr11	49087777	49088777	+	811.880005	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008330, intron 1 of 1)	intron (NM_008330, intron 1 of 1)	1260.0	NM_008330	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135219815-2	chr4	135219315	135220315	+	811.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 4 of 5)	intron (NM_013885, intron 4 of 5)	52945.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-56296513-2	chr8	56296013	56297013	+	811.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008278, intron 2 of 6)	intron (NM_008278, intron 2 of 6)	1961.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81403424-2	chr10	81402924	81403924	+	811.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_008688, exon 9 of 10)	exon (NM_008688, exon 9 of 10)	-6151.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-47230124-2	chr13	47229605	47230605	+	811.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 4 of 7)	intron (NM_146042, intron 4 of 7)	36102.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	70.0	130.0	108.0	91.0	160.5	156.5
Merged-chr3-123509385-2	chr3	123508886	123509886	+	811.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1050.0	NR_028574	69895.0	Mm.260791	NR_028574	ENSMUSG00000104960	Snhg8	1110065M07Rik|2010109N14Rik	small nucleolar RNA host gene 8	ncRNA	44.5	150.5	146.0	104.5	228.5	123.5
Merged-chr10-91208712-4	chr10	91208222	91209222	+	811.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151510, exon 4 of 4)	non-coding (NR_151510, exon 4 of 4)	11897.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-85698142-4	chr18	85697602	85698602	+	811.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-696850.0	NM_001360910	246317.0	Mm.329578	NM_144946	ENSMUSG00000050321	Neto1	AI851453|Btcl1|C130005O10Rik	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58631313-2	chr15	58630813	58631813	+	811.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	192114.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-44984247-2	chr2	44983747	44984747	+	811.833313	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001355289, exon 11 of 11)	3' UTR (NM_001355289, exon 11 of 11)	38930.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26236208-2	chr17	26235708	26236708	+	811.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	8034.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	16.0	68.0	32.5	34.0	42.5	20.5
Merged-chr4-3810422-3	chr4	3809907	3810907	+	811.827759	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25248.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	2.5	0.0	9.5	4.5	3.0	16.0
Merged-chr19-45311118-4	chr19	45310604	45311604	+	811.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52630.0	NM_001360122	12234.0	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47121252-4	chr19	47120742	47121742	+	811.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011053, intron 25 of 35)	intron (NM_011053, intron 25 of 35)	17052.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	3.5	9.5	5.5	1.0	2.0	2.5
Merged-chr1-149943859-4	chr1	149943356	149944356	+	811.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	Lx8|LINE|L1	17434.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129275482-4	chr6	129274982	129275982	+	811.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033122)	promoter-TSS (NM_001033122)	-113.0	NM_001033122	12515.0	Mm.74745	NM_001033122	ENSMUSG00000030156	Cd69	5830438K24Rik|AI452015|AIM|VEA	CD69 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-88847528-3	chr18	88847017	88848017	+	811.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46690.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11630175-3	chr2	11629681	11630681	+	811.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12611.0	NM_008367	16184.0	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20743535-3	chr11	20743040	20744040	+	811.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1984.0	NM_181411	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	13.5	28.5	26.0	14.5	29.0	27.5
Merged-chr11-95827196-4	chr11	95826706	95827706	+	811.762512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153104, intron 1 of 2)	intron (NM_153104, intron 1 of 2)	2706.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-14239722-4	chr19	14239206	14240206	+	811.758301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	196244.0	NR_152176	667433.0	Mm.128913	NR_152176		Gm8630	EG667433	predicted gene 8630	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128802911-2	chr10	128802411	128803411	+	811.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358267, intron 3 of 5)	intron (NM_001358267, intron 3 of 5)	1056.0	NM_001358267	73827.0	Mm.24630	NM_178066	ENSMUSG00000047090	Tmem198b	1110012D08Rik	transmembrane protein 198b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191273788-2	chr1	191273288	191274288	+	811.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	44330.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66543016-4	chr9	66542582	66543582	+	811.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144937, intron 6 of 14)	intron (NM_144937, intron 6 of 14)	-28489.0	NM_175206	74165.0	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-154677919-4	chr1	154677424	154678424	+	811.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009782, intron 3 of 46)	intron (NM_009782, intron 3 of 46)	47996.0	NM_009782	12290.0	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91729187-2	chr6	91728687	91729687	+	811.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 5 of 14)	intron (NM_009320, intron 5 of 14)	45120.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149543350-4	chr4	149542847	149543847	+	811.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023465, intron 2 of 4)	intron (NM_023465, intron 2 of 4)	-1770.0	NM_001141930	67087.0	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38939937-4	chr6	38939438	38940438	+	811.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	RLTR17B_Mm|LTR|ERVK	20952.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9067281-4	chr3	9066784	9067784	+	811.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040597, intron 2 of 2)	intron (NR_040597, intron 2 of 2)	5320.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85525621-2	chr12	85525121	85526121	+	811.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	51731.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66869739-4	chr14	66869231	66870231	+	811.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001034881, exon 1 of 1)	3' UTR (NM_001034881, exon 1 of 1)	881.0	NM_001034881	432870.0	Mm.425890	NM_001034881	ENSMUSG00000075553	Gm5464	EG432870	predicted gene 5464	protein-coding	9.0	35.0	19.0	10.0	36.5	23.0
Merged-chr5-125404157-5	chr5	125403663	125404663	+	811.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14146.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	1.0	7.5	0.5	0.5	3.5	0.0
Merged-chr15-83465223-3	chr15	83464735	83465735	+	811.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159509)	promoter-TSS (NM_001159509)	-629.0	NM_001358643	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107080389-4	chr4	107079904	107080904	+	811.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346552, intron 5 of 6)	intron (NM_001346552, intron 5 of 6)	13416.0	NM_175471	230582.0	Mm.44608	NM_175471	ENSMUSG00000028621	Cyb5rl	2810410C14Rik	cytochrome b5 reductase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43939494-4	chr1	43938985	43939985	+	811.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009418, intron 1 of 29)	intron (NM_009418, intron 1 of 29)	5491.0	NM_009418	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-52195840-3	chr14	52195328	52196328	+	811.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033618, intron 1 of 25)	B3|SINE|B2	1411.0	NM_033618	114741.0	Mm.21662	NM_033618	ENSMUSG00000035726	Supt16	Cdc68|Fact140|Spt16|Supt16h	suppressor of Ty 16	protein-coding	12.5	3.0	5.0	2.0	19.0	3.0
Merged-chr11-20215456-3	chr11	20214954	20215954	+	811.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 1 of 5)	intron (NM_008996, intron 1 of 5)	14042.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	23.5	24.5	14.0	23.0	24.5	14.0
Merged-chr11-95298316-2	chr11	95297816	95298816	+	811.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_177619, intron 3 of 12)	intron (NM_177619, intron 3 of 12)	11930.0	NM_001195004	217127.0	Mm.90213	NM_177619	ENSMUSG00000038909	Kat7	Hbo1|Hboa|Myst2	K(lysine) acetyltransferase 7	protein-coding	0.0	4.0	2.5	0.0	4.0	2.5
Merged-chr7-89217329-2	chr7	89216829	89217829	+	811.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 5 of 14)	(CA)n|Simple_repeat|Simple_repeat	121458.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47174609-2	chr19	47174080	47175080	+	811.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4240.0	NM_021360	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr17-33911791-2	chr17	33911291	33912291	+	811.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_007829, exon 3 of 8)	exon (NM_007829, exon 3 of 8)	2190.0	NM_001199733	13163.0	Mm.271809	NM_007829	ENSMUSG00000002307	Daxx	-	Fas death domain-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121721072-2	chr5	121720572	121721572	+	811.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009125, intron 1 of 24)	B3A|SINE|B2	9463.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85809460-4	chr1	85808952	85809952	+	811.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355046, intron 2 of 9)	intron (NM_001355046, intron 2 of 9)	15435.0	NM_001355047	12283.0	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23727703-4	chr11	23727212	23728212	+	811.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033654, intron 16 of 17)	intron (NM_001033654, intron 16 of 17)	43258.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-16954285-4	chr11	16953782	16954782	+	811.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_176982, exon 4 of 4)	exon (NM_176982, exon 4 of 4)	2872.0	NM_176982	319701.0	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135292924-4	chr4	135292401	135293401	+	811.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20141.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148682384-4	chr2	148681908	148682908	+	811.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355689, intron 1 of 5)	intron (NM_001355689, intron 1 of 5)	1288.0	NM_028986	74533.0	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86595406-2	chr6	86594906	86595906	+	811.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32768.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-65238673-3	chr2	65238158	65239158	+	811.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027225)	promoter-TSS (NM_027225)	-32.0	NM_027225	319876.0	Mm.34159	NM_027225	ENSMUSG00000034903	Cobll1	1810047P18Rik|Coblr1|D430044D16Rik	Cobl-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137075758-4	chr5	137075247	137076247	+	811.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3475.0	NM_008871	18787.0	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	0.0	0.0	0.5	0.5	0.0	0.5
Merged-chr13-43788487-4	chr13	43787910	43788910	+	811.589294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	3298.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101763632-3	chr5	101763124	101764124	+	811.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1506.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63948305-3	chr4	63947839	63948839	+	811.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87055.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-81588067-4	chr18	81587555	81588555	+	811.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	404025.0	NR_039589	100628596.0		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122396126-3	chr7	122395614	122396614	+	811.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	106989.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19148592-2	chr7	19148063	19149063	+	811.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026111, intron 1 of 6)	intron (NM_026111, intron 1 of 6)	633.0	NM_026111	67369.0	Mm.234876	NM_026111	ENSMUSG00000030407	Qpctl	1810019P04Rik|BB101812|gQC	glutaminyl-peptide cyclotransferase-like	protein-coding	0.0	0.5	3.0	2.0	1.0	0.5
Merged-chr7-28431495-2	chr7	28430995	28431995	+	811.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175021, intron 1 of 12)	intron (NM_175021, intron 1 of 12)	4696.0	NM_175021	233033.0	Mm.54120	NM_175021	ENSMUSG00000109336	Samd4b	BC042901	sterile alpha motif domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91482033-2	chr16	91481533	91482533	+	811.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-3182.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20430180-2	chr16	20429680	20430680	+	811.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-3786.0	NM_176839	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12906571-2	chr13	12906071	12907071	+	811.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98759.0	NM_031191	18811.0	Mm.88796	NM_031191	ENSMUSG00000079092	Prl2c2	Ghd2|MRP-1|PLF-1|Plf|Plf1	prolactin family 2, subfamily c, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59327636-2	chr2	59327136	59328136	+	811.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 11 of 20)	intron (NM_175464, intron 11 of 20)	59046.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-58968202-1	chr4	58967702	58968702	+	811.5	f0_c57.idr	intron (NM_025968, intron 9 of 9)	intron (NM_025968, intron 9 of 9)	18876.0	NM_025968	67103.0	Mm.34497	NM_025968	ENSMUSG00000028378	Ptgr1	2510002C21Rik|Ltb4dh|Zadh3	prostaglandin reductase 1	protein-coding	5.0	13.0	1.5	9.0	3.0	8.5
Merged-chr10-127532277-2	chr10	127531777	127532777	+	811.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183297, intron 1 of 1)	intron (NM_183297, intron 1 of 1)	2282.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	5.0	0.0	0.5	5.0	0.0	0.5
Merged-chr3-30979880-2	chr3	30979380	30980380	+	811.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-10465.0	NM_001165956	241915.0	Mm.233173	NM_153421	ENSMUSG00000037652	Phc3	E030046K01Rik|Edr3|Hph3	polyhomeotic 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-96021139-2	chr16	96020639	96021639	+	811.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145125, intron 32 of 41)	intron (NM_145125, intron 32 of 41)	-30179.0	NM_019537	56088.0	Mm.396248	NM_019537	ENSMUSG00000022913	Psmg1	AW552102|Dscr2	proteasome (prosome, macropain) assembly chaperone 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-115939920-2	chr4	115939420	115940420	+	811.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130865)	promoter-TSS (NM_130865)	6.0	NM_001025567	140477.0	Mm.213206	NM_130865	ENSMUSG00000028707	Dmbx1	Atx|Cdmx|Mbx|Otx3	diencephalon/mesencephalon homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45567074-2	chr13	45566574	45567574	+	811.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009124, exon 7 of 8)	exon (NM_009124, exon 7 of 8)	59630.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111674033-2	chr10	111673533	111674533	+	811.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-79760.0	NR_045344	71321.0	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6446770-2	chr2	6446270	6447270	+	811.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94034.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-33148659-2	chr12	33148159	33149159	+	811.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028139, intron 2 of 3)	intron (NM_028139, intron 2 of 3)	973.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	74.5	75.5	105.0	70.5	75.0	105.5
Merged-chr4-141636832-2	chr4	141636332	141637332	+	811.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 6 of 18)	RSINE1|SINE|B4	-12998.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	11.0	10.0	19.0	8.0	3.5	6.5
Merged-chr17-20946416-2	chr17	20945906	20946906	+	811.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016891, intron 1 of 14)	intron (NM_016891, intron 1 of 14)	952.0	NM_016891	51792.0	Mm.294138	NM_016891	ENSMUSG00000007564	Ppp2r1a	6330556D22Rik|PP2A|PR65	protein phosphatase 2, regulatory subunit A, alpha	protein-coding	19.0	27.0	46.5	18.5	26.0	42.0
Merged-chr13-12463006-2	chr13	12462506	12463506	+	811.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16|LTR|ERVK	-1268.0	NM_001291057	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127607694-2	chr10	127607194	127608194	+	811.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 4 of 88)	PB1D7|SINE|Alu	13454.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	28.5	57.0	30.0	24.0	49.0	35.5
Merged-chr4-56866560-2	chr4	56866060	56867060	+	811.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1349.0	NM_018761	54366.0	Mm.218891	NM_018761	ENSMUSG00000038816	Ctnnal1	ACRP|AI616177|AW545119|C86009|Catnal1	catenin (cadherin associated protein), alpha-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3058910-2	chr4	3058410	3059410	+	811.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113173.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr1-74374408-2	chr1	74373908	74374908	+	811.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013612)	promoter-TSS (NM_013612)	-795.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46147417-2	chr19	46146917	46147917	+	811.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008852, intron 1 of 3)	CpG	908.0	NM_008852	18742.0	Mm.6255	NM_008852	ENSMUSG00000025229	Pitx3	Ptx3|ak	paired-like homeodomain transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-42150879-2	chr15	42150379	42151379	+	811.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-281159.0	NM_175456	223513.0	Mm.148913	NM_175456	ENSMUSG00000042895	Abra	C130068O12Rik|STARS	actin-binding Rho activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49407894-2	chr7	49407394	49408394	+	811.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 4 of 37)	intron (NM_175272, intron 4 of 37)	161705.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-28433060-2	chr2	28432560	28433560	+	811.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14881.0	NM_001005420	241289.0	Mm.330095	NM_001005420	ENSMUSG00000035829	Ppp1r26	Gm347|Kiaa0649|mKIAA0649	protein phosphatase 1, regulatory subunit 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-96144310-2	chr16	96143810	96144810	+	811.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1109.0	NM_207301	71446.0	Mm.255063	NM_207301	ENSMUSG00000023147	Wrb	5530402J05Rik|C030018G21Rik|Chd5	tryptophan rich basic protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-181951422-2	chr1	181950922	181951922	+	811.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010135, intron 3 of 14)	intron (NM_010135, intron 3 of 14)	68558.0	NM_010135	13800.0	Mm.87759	NM_008680	ENSMUSG00000022995	Enah	Mena|NDPP-1|Ndpp1|WBP8	ENAH actin regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89419112-4	chr3	89418676	89419676	+	811.479187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016904)	promoter-TSS (NM_016904)	625.0	NM_011368	20416.0	Mm.86595	NM_011368	ENSMUSG00000042626	Shc1	Shc|ShcA|p66|p66shc	src homology 2 domain-containing transforming protein C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57721224-4	chr10	57720753	57721753	+	811.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008863, intron 4 of 5)	intron (NM_008863, intron 4 of 5)	-63670.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4346313-4	chr2	4345813	4346813	+	811.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172475, intron 1 of 22)	intron (NM_172475, intron 1 of 22)	-54663.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138297933-4	chr1	138297417	138298417	+	811.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	24179.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97368301-3	chr6	97367806	97368806	+	811.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	intron (NM_145148, intron 6 of 23)	90980.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-19879876-3	chr4	19879379	19880379	+	811.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175406, intron 7 of 7)	intron (NM_175406, intron 7 of 7)	42687.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84409481-3	chr10	84408964	84409964	+	811.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 2 of 6)	intron (NM_001004363, intron 2 of 6)	31007.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122660627-3	chr6	122660129	122661129	+	811.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34205.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84276956-3	chr8	84276486	84277486	+	811.4317629999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A2|LTR|ERVK	-6584.0	NM_026350	67736.0	Mm.30095	NM_026350	ENSMUSG00000004994	Ccdc130	4930527D15Rik|C77430	coiled-coil domain containing 130	protein-coding	9.5	10.5	20.5	2.0	8.5	6.0
Merged-chr1-133661903-3	chr1	133661368	133662368	+	811.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166552)	promoter-TSS (NM_001166552)	-469.0	NM_001276767	70579.0	Mm.245357	NM_144530	ENSMUSG00000102976	Zc3h11a	1110003F06Rik|5730454B08Rik|G630041M05Rik|Zc3hdc11a|Zc3hh11a|mKIAA0663	zinc finger CCCH type containing 11A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82417727-4	chr15	82417233	82418233	+	811.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10539.0	NM_010005	13101.0	Mm.174372	NM_010005	ENSMUSG00000094806	Cyp2d10	AI303445|Cyp2d|P450-2D	cytochrome P450, family 2, subfamily d, polypeptide 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59326820-4	chr10	59326326	59327326	+	811.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316370, intron 1 of 13)	intron (NM_001316370, intron 1 of 13)	3530.0	NM_001316370	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-38214773-3	chr7	38214271	38215271	+	811.399963	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GC_rich|Low_complexity|Low_complexity	13223.0	NM_024413	72287.0	Mm.333798	NM_024413	ENSMUSG00000074170	Plekhf1	1810013P09Rik|APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology domain containing, family F (with FYVE domain) member 1	protein-coding	6.0	11.5	3.5	0.0	0.0	0.0
Merged-chr9-83557468-4	chr9	83556921	83557921	+	811.37915	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	9083.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	2.5	7.5	1.5	1.0	0.5	2.5
Merged-chr2-26594327-2	chr2	26593827	26594827	+	811.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_026212, intron 5 of 5)	B1_Mus1|SINE|Alu	-2907.0	NR_106155	102465787.0		NR_106155	ENSMUSG00000105799	Mir126b	mmu-mir-126b	microRNA 126b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-94614143-4	chr9	94613745	94614745	+	811.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-55647.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120673224-2	chr8	120672724	120673724	+	811.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001293559, exon 4 of 5)	exon (NM_001293559, exon 4 of 5)	4904.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60282701-2	chr2	60282201	60283201	+	811.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025422, intron 1 of 4)	intron (NM_025422, intron 1 of 4)	1783.0	NM_025422	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-34225011-1	chr12	34224511	34225511	+	811.333313	f0_balb.idr	intron (NM_001271386, intron 19 of 27)	intron (NM_001271386, intron 19 of 27)	267340.0	NM_011658	22160.0	Mm.3280	NM_011658	ENSMUSG00000035799	Twist1	M-Twist|Pde|Ska10|Ska<m10Jus>|Twist|bHLHa38|pdt	twist basic helix-loop-helix transcription factor 1	protein-coding	8.5	9.0	2.5	4.5	21.0	7.5
Merged-chr4-120909936-4	chr4	120909408	120910408	+	811.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15097.0	NM_028457	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr5-142797866-3	chr5	142797350	142798350	+	811.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178242, intron 2 of 15)	intron (NM_178242, intron 2 of 15)	19537.0	NM_178242	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-126932648-2	chr2	126932156	126933156	+	811.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_023220, intron 1 of 14)	intron (NM_023220, intron 1 of 14)	579.0	NM_023220	66552.0	Mm.269928	NM_023220	ENSMUSG00000027366	Sppl2a	2010106G01Rik|C130089K23Rik	signal peptide peptidase like 2A	protein-coding	38.5	199.0	119.0	55.5	139.5	140.5
Merged-chr1-85593207-3	chr1	85592679	85593679	+	811.333313	f0_balb.idr|f1_balb.idr	intron (NM_030194, intron 3 of 11)	intron (NM_030194, intron 3 of 11)	5631.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24445719-3	chr7	24445218	24446218	+	811.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199013)	promoter-TSS (NM_199013)	-36.0	NM_199013	210145.0	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	0.0	1.0	0.0	0.0	0.5	0.0
Merged-chr5-4877390-1	chr5	4876890	4877890	+	811.333313	f0_balb.idr	intron (NM_011074, intron 14 of 14)	intron (NM_011074, intron 14 of 14)	-119174.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0.5	24.5	14.0	2.5	11.5	4.0
Merged-chr7-44359049-3	chr7	44358558	44359558	+	811.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027049)	TTS (NM_027049)	15972.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0.0	4.0	1.5	0.0	1.0	1.0
Merged-chr6-115803626-3	chr6	115803134	115804134	+	811.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025958, intron 14 of 14)	intron (NM_025958, intron 14 of 14)	4469.0	NR_028546	100217451.0	Mm.484708	NR_028546	ENSMUSG00000064563	Snora7a	MBI-141	small nucleolar RNA, H/ACA box 7A	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-36769356-3	chr9	36768895	36769895	+	811.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1817.0	NM_008408	16430.0	Mm.2863	NM_008408	ENSMUSG00000032116	Stt3a	AA408947|BB081708|Itm1	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101381941-3	chr15	101381447	101382447	+	811.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11822.0	NM_028770	74127.0	Mm.440055	NM_028770	ENSMUSG00000037185	Krt80	1200016G03Rik|2310041I20Rik|Kb20	keratin 80	protein-coding	0.0	2.5	7.0	0.0	0.0	3.5
Merged-chr2-38509200-3	chr2	38508704	38509704	+	811.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2493.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-36008222-2	chr2	36007722	36008722	+	811.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28598.0	NM_029774	74410.0	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166655501-2	chr2	166655001	166656001	+	811.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	MTE2b|LTR|ERVL-MaLR	58331.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30246725-4	chr2	30246233	30247233	+	811.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177725, intron 2 of 3)	intron (NM_177725, intron 2 of 3)	8964.0	NM_177725	241296.0	Mm.389232	NM_177725	ENSMUSG00000007476	Lrrc8a	Lrrc8|mKIAA1437	leucine rich repeat containing 8A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115270653-3	chr11	115270053	115271053	+	811.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007997, intron 6 of 11)	MT2B|LTR|ERVL	-3310.0	NM_010350	14813.0	Mm.39090	NM_010350	ENSMUSG00000020734	Grin2c	GluN2C|NMDAR2C|NR2C	glutamate receptor, ionotropic, NMDA2C (epsilon 3)	protein-coding	0.0	1.5	1.0	0.0	0.0	1.5
Merged-chr19-21644185-3	chr19	21643713	21644713	+	811.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025423, intron 1 of 3)	intron (NM_025423, intron 1 of 3)	8578.0	NM_025423	66206.0	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-68935262-3	chr18	68934761	68935761	+	811.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038051, intron 3 of 6)	intron (NR_038051, intron 3 of 6)	16267.0	NR_038051	78931.0	Mm.160155	NR_038051		4930546C10Rik	-	RIKEN cDNA 4930546C10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45709385-5	chr7	45708951	45709951	+	811.210022	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_203280)	TTS (NM_203280)	4204.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121848257-4	chr5	121847768	121848768	+	811.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359949)	promoter-TSS (NM_001359949)	-729.0	NM_175474	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	31.0	69.5	26.5	19.5	55.5	28.0
Merged-chr8-70509530-2	chr8	70509013	70510013	+	811.208374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151735)	promoter-TSS (NR_151735)	432.0	NM_001348229	22186.0	Mm.297372	NM_019883	ENSMUSG00000090137	Uba52	Cep52|D8Ertd21e|Gm1863|Rps27a|Ubb|Ubc	ubiquitin A-52 residue ribosomal protein fusion product 1	protein-coding	33.0	42.5	35.0	12.5	42.0	35.5
Merged-chr5-137314132-5	chr5	137313579	137314579	+	811.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_031406)	TTS (NM_031406)	162.0	NM_011639	22051.0	Mm.27063	NM_011639	ENSMUSG00000023348	Trip6	-	thyroid hormone receptor interactor 6	protein-coding	22.5	20.0	28.0	33.5	24.0	37.0
Merged-chr10-40058827-2	chr10	40058327	40059327	+	811.1999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 3 of 5)	intron (NM_001114332, intron 3 of 5)	-33559.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-37994825-4	chr16	37994320	37995320	+	811.174988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153394, intron 8 of 9)	intron (NM_153394, intron 8 of 9)	-22503.0	NR_040565	75175.0	Mm.399335	NR_040565		4930542C21Rik	-	RIKEN cDNA 4930542C21 gene	ncRNA	5.0	1.0	6.5	2.0	2.0	2.0
Merged-chr2-158768607-4	chr2	158768096	158769096	+	811.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027975, intron 1 of 3)	CpG	497.0	NM_027975	71878.0	Mm.85162	NM_027975	ENSMUSG00000027654	Fam83d	2310007D09Rik|BB104611	family with sequence similarity 83, member D	protein-coding	1.5	0.0	0.0	1.5	0.5	7.0
Merged-chr16-30976036-2	chr16	30975536	30976536	+	811.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 3 of 3)	intron (NM_198626, intron 3 of 3)	105396.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	25.5	79.5	50.5	52.0	69.0	48.0
Merged-chr19-43525254-1	chr19	43524754	43525754	+	811.166687	f0_balb.idr	promoter-TSS (NM_010324)	promoter-TSS (NM_010324)	-649.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	73.5	144.5	101.5	37.0	71.0	90.5
Merged-chr6-121366747-3	chr6	121366248	121367248	+	811.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133661)	TTS (NM_133661)	20051.0	NM_133661	14411.0	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46644880-3	chr17	46644383	46645383	+	811.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357130, intron 1 of 15)	intron (NM_001357130, intron 1 of 15)	1197.0	NM_001357130	74764.0	Mm.279599	NM_029091	ENSMUSG00000003546	Klc4	1200014P03Rik|AA408085|AW146303|Knsl8	kinesin light chain 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-24336018-4	chr18	24335525	24336525	+	811.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3341.0	NR_152129	328919.0	Mm.118671	NR_152129		Gm38410	9530053H22	predicted gene, 38410	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-40325295-2	chr1	40324795	40325795	+	811.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133193, intron 1 of 10)	intron (NM_133193, intron 1 of 10)	706.0	NM_133193	107527.0	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-45474407-4	chr5	45473906	45474906	+	811.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18968.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	0.0	1.0	0.0	0.0	1.0	0.0
Merged-chr10-79997314-4	chr10	79996815	79997815	+	811.148804	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013850)	promoter-TSS (NM_013850)	-293.0	NM_001347081	27403.0	Mm.103351	NM_013850	ENSMUSG00000035722	Abca7	ABCX|Abc51	ATP-binding cassette, sub-family A (ABC1), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120381585-4	chr2	120381096	120382096	+	811.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110497, intron 7 of 19)	intron (NM_001110497, intron 7 of 19)	-22300.0	NM_172672	76051.0	Mm.38851	NM_172672	ENSMUSG00000062646	Ganc	5830445O15Rik|9330160A12|mFLJ00088	glucosidase, alpha; neutral C	protein-coding	10.5	13.5	4.5	15.5	3.5	6.5
Merged-chr4-48039911-2	chr4	48039411	48040411	+	811.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5394.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-65112245-4	chr1	65111758	65112758	+	811.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175293, intron 5 of 7)	intron (NM_175293, intron 5 of 7)	-8895.0	NM_007774	12964.0	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70347436-4	chr12	70346929	70347929	+	811.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001286387, exon 1 of 14)	5' UTR (NM_001286387, exon 1 of 14)	185.0	NM_001286386	94090.0	Mm.184012	NM_053167	ENSMUSG00000021071	Trim9	-	tripartite motif-containing 9	protein-coding	1.5	0.0	1.5	0.0	0.0	0.0
Merged-chr7-141577865-2	chr7	141577365	141578365	+	811.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357068, intron 1 of 21)	ORR1B1-int|LTR|ERVL-MaLR	15685.0	NM_007459	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24785973-3	chr16	24785446	24786446	+	811.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 8 of 12)	MTE2b|LTR|ERVL-MaLR	64091.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84193676-3	chr8	84193137	84194137	+	811.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14676.0	NR_029821	723819.0		NR_029821	ENSMUSG00000065483	Mir181c	Mirn181c|mir-181c	microRNA 181c	ncRNA	30.0	67.0	31.5	7.5	13.0	16.0
Merged-chr2-30942230-2	chr2	30941730	30942730	+	811.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10771.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	16.5	17.0	20.0	13.0	21.0	24.5
Merged-chr11-89051956-2	chr11	89051466	89052466	+	811.099976	f0_c57.idr|f1_c57bl6.idr	intron (NM_019505, intron 3 of 10)	L1MB8|LINE|L1	8782.0	NM_019505	56077.0	Mm.153695	NM_019505	ENSMUSG00000000276	Dgke	C87606|DAGK6|DGK	diacylglycerol kinase, epsilon	protein-coding	10.5	4.5	16.5	0.0	0.5	5.0
Merged-chr15-36163980-4	chr15	36163542	36164542	+	811.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081253, intron 1 of 4)	intron (NM_001081253, intron 1 of 4)	842.0	NM_001081253	78803.0	Mm.26393	NM_175281	ENSMUSG00000048230	Fbxo43	4930533G20Rik|Emi2	F-box protein 43	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58484874-4	chr13	58484374	58485374	+	811.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81531.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73967851-3	chr12	73967353	73968353	+	811.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178392, intron 1 of 9)	intron (NM_178392, intron 1 of 9)	3323.0	NM_178392	75627.0	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59324589-4	chr10	59324127	59325127	+	811.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316370, intron 1 of 13)	intron (NM_001316370, intron 1 of 13)	1331.0	NM_001316370	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108489504-2	chr9	108489004	108490004	+	811.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008483, exon 30 of 33)	exon (NM_008483, exon 30 of 33)	-1172.0	NM_001168372	71472.0	Mm.289706	NM_027804	ENSMUSG00000006676	Usp19	8430421I07Rik|AI047774|Zmynd9	ubiquitin specific peptidase 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-86006716-1	chr8	86006216	86007216	+	811.0	f0_balb.idr	intron (NM_199446, intron 15 of 31)	MYSERV-int|LTR|ERVK	165714.0	NM_199446	102093.0	Mm.237296	NM_199446	ENSMUSG00000036879	Phkb	AI463271	phosphorylase kinase beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99986963-1	chr12	99986463	99987463	+	811.0	f0_balb.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	22464.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33329114-2	chr2	33328614	33329614	+	811.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175211, intron 3 of 19)	intron (NM_175211, intron 3 of 19)	42380.0	NM_001290570	241308.0	Mm.274249	NM_175211	ENSMUSG00000038831	Ralgps1	5830418G11Rik|AI853783|AI854138|RALGEF2|RALGPS1A|RalGEF 2|mKIAA0351	Ral GEF with PH domain and SH3 binding motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-28154102-2	chr9	28153602	28154602	+	811.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177906, intron 1 of 7)	intron (NM_177906, intron 1 of 7)	362833.0	NM_177906	330908.0	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59823252-2	chr4	59822781	59823781	+	811.0	f0_balb.idr|f0_c57.idr	intron (NM_172468, intron 1 of 8)	L1MB2|LINE|L1	17631.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114091208-2	chr7	114090708	114091708	+	811.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	26573.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	15.5	20.5	30.0	9.5	20.5	29.0
Merged-chr8-100059849-2	chr8	100059349	100060349	+	811.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR34B_MM|LTR|ERVK	643175.0	NR_132435	234624.0	Mm.124595	NM_175479	ENSMUSG00000052479	A330008L17Rik	-	RIKEN cDNA A330008L17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111939521-2	chr8	111939021	111940021	+	811.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1182.0	NM_026693	93739.0	Mm.371666	NM_026693	ENSMUSG00000031950	Gabarapl2	0610012F20Rik|2900019O08Rik|AI173605|GATE-16|Gef2	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-4431007-1	chr10	4430507	4431507	+	811.0	f0_balb.idr	intron (NM_001358796, intron 1 of 13)	MTEb|LTR|ERVL-MaLR	1381.0	NM_025343	66084.0	Mm.153111	NM_025343	ENSMUSG00000019763	Rmnd1	0610042C05Rik|AA408137|AI462664|AW536662	required for meiotic nuclear division 1 homolog	protein-coding	31.0	148.5	116.5	88.5	130.0	87.5
Merged-chr2-166375810-2	chr2	166375310	166376310	+	811.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	-71641.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-22225183-1	chr17	22224683	22225683	+	811.0	f0_c57.idr	intron (NM_001205095, intron 1 of 4)	Lx2|LINE|L1	431.0	NM_001205095	240038.0	Mm.227945	NM_001205095	ENSMUSG00000096433	Zfp994	EG240038|Gm4944	zinc finger protein 994	protein-coding	146.0	220.5	190.5	34.5	91.5	50.5
Merged-chr8-83974169-1	chr8	83973669	83974669	+	811.0	f1_c57bl6.idr	intron (NM_008854, intron 1 of 9)	intron (NM_008854, intron 1 of 9)	1191.0	NM_008854	18747.0	Mm.19111	NM_008854	ENSMUSG00000005469	Prkaca	PKCD|Pkaca	protein kinase, cAMP dependent, catalytic, alpha	protein-coding	0.0	3.0	0.0	0.0	1.5	1.0
Merged-chr4-141536764-5	chr4	141536245	141537245	+	811.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347235, intron 1 of 14)	CpG	1852.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	31.5	40.0	24.0	5.5	50.5	43.0
Merged-chr3-31061909-1	chr3	31061409	31062409	+	811.0	f0_c57.idr	Intergenic	B3|SINE|B2	22943.0	NR_105975	102465610.0		NR_105975	ENSMUSG00000098890	Mir7008	Gm27752|mmu-mir-7008	microRNA 7008	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69757149-2	chr11	69756649	69757649	+	811.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291068, intron 1 of 28)	B2_Mm1a|SINE|B2	1484.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	11.0	8.5	10.0	13.5	18.0	9.0
Merged-chr5-66111102-2	chr5	66110602	66111602	+	811.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-12923.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91010861-3	chr1	91010351	91011351	+	811.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	12124.0	NM_001111312	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-51429238-1	chr12	51428738	51429738	+	811.0	f0_balb.idr	intron (NM_029825, intron 17 of 24)	intron (NM_029825, intron 17 of 24)	51725.0	NM_029825	76983.0	Mm.216511	NM_029825	ENSMUSG00000020952	Scfd1	3110021P21Rik|RA410|STXBP1L2	Sec1 family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82471929-2	chr18	82471429	82472429	+	811.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G3|LTR|ERVL-MaLR	-3194.0	NM_001025245	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55465976-4	chr13	55465427	55466427	+	811.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001030296, intron 1 of 2)	intron (NM_001030296, intron 1 of 2)	1660.0	NM_001030296	432763.0	Mm.315457	NM_001030296	ENSMUSG00000034686	Prr7	XM_484263	proline rich 7 (synaptic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96621777-2	chr10	96621277	96622277	+	811.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007569, exon 2 of 2)	3' UTR (NM_007569, exon 2 of 2)	4776.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30642787-2	chr2	30642287	30643287	+	811.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35224.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-19778114-1	chr14	19777614	19778614	+	811.0	f0_balb.idr	exon (NM_008695, exon 5 of 21)	exon (NM_008695, exon 5 of 21)	26857.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-13021141-2	chr5	13020641	13021641	+	811.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	-375643.0	NM_001243072	20346.0	Mm.372039	NM_009152	ENSMUSG00000028883	Sema3a	Hsema-I|SEMA1|SemD|Semad|coll-1	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132571713-2	chr4	132571213	132572213	+	811.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081211, intron 1 of 1)	intron (NM_001081211, intron 1 of 1)	7646.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	2.0	5.0	9.0	13.5	10.0	17.5
Merged-chr3-84854640-1	chr3	84854140	84855140	+	811.0	f0_balb.idr	intron (NM_001177773, intron 1 of 13)	Lx8b|LINE|L1	-9505.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.0	3.0	1.0	3.0	0.0	0.5
Merged-chr10-127645380-1	chr10	127644880	127645880	+	811.0	f1_balb.idr	intron (NM_009284, intron 1 of 21)	RLTR21|LTR|ERVK	2394.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	0.0	50.5	15.0	7.5	10.5	9.0
Merged-chr15-59639812-2	chr15	59639312	59640312	+	811.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8842.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124812932-2	chr6	124812432	124813432	+	811.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009415, intron 1 of 6)	intron (NM_009415, intron 1 of 6)	1364.0	NM_009415	21991.0	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|TIM|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8799543-2	chr10	8799043	8800043	+	811.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 4 of 19)	PB1D7|SINE|Alu	86527.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37636175-2	chr1	37635675	37636675	+	811.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028096, intron 3 of 9)	intron (NM_028096, intron 3 of 9)	83636.0	NM_028096	72097.0	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-145281064-2	chr5	145280564	145281564	+	811.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2279.0	NM_001081431	666311.0	Mm.260773	NM_001081431	ENSMUSG00000070420	Zscan25	EG666311|Zfp498	zinc finger and SCAN domain containing 25	protein-coding	10.0	44.5	28.5	8.0	18.0	16.0
Merged-chr3-27646061-4	chr3	27645553	27646553	+	811.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173182, intron 1 of 25)	intron (NM_173182, intron 1 of 25)	-61058.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91199811-2	chr2	91199311	91200311	+	811.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-3101.0	NM_001357067	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	23.0	26.0	22.5	20.0	25.0	17.5
Merged-chr10-94372497-2	chr10	94371997	94372997	+	811.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	MIRb|SINE|MIR	60548.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-133988662-2	chr2	133988162	133989162	+	811.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	423954.0	NR_037273	100526500.0		NR_037273	ENSMUSG00000093338	Mir3090	mmu-mir-3090	microRNA 3090	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3660408-2	chr12	3659908	3660908	+	811.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 8 of 17)	URR1B|DNA|hAT-Charlie	87424.0	NM_007886	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71213975-2	chr17	71213475	71214475	+	811.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164885, intron 1 of 19)	intron (NM_001164885, intron 1 of 19)	9321.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	2.5	16.5	2.5	3.5	5.5	8.0
Merged-chr11-59849791-2	chr11	59849291	59850291	+	811.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134029, intron 1 of 4)	MLTR11A|LTR|ERVK	1718.0	NM_134029	103850.0	Mm.41761	NM_134029	ENSMUSG00000032615	Nt5m	2010013E09Rik|AI846937|dNT-2	5',3'-nucleotidase, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3771893-7	chr4	3771374	3772374	+	810.9571530000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	56910.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	5.0	6.0	14.0	0.0	6.0	5.5
Merged-chr9-110871190-3	chr9	110870654	110871654	+	810.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146260, intron 3 of 5)	intron (NM_146260, intron 3 of 5)	8929.0	NM_146260	20776.0	Mm.390229	NM_146260	ENSMUSG00000049555	Tmie	5131400L21Rik|Mm.87012|sr	transmembrane inner ear	protein-coding	0.0	0.0	1.5	0.0	0.0	4.0
Merged-chr7-81209209-3	chr7	81208751	81209751	+	810.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4553.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34663301-4	chr18	34662816	34663816	+	810.920837	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11580.0	NM_178347	52563.0	Mm.196638	NM_178347	ENSMUSG00000024370	Cdc23	6030435O18|D18Ertd243e	CDC23 cell division cycle 23	protein-coding	0.0	0.0	0.0	2.0	7.5	4.5
Merged-chr19-7204602-2	chr19	7204102	7205102	+	810.916687	f1_balb.idr|f1_c57bl6.idr	intron (NM_134150, intron 1 of 6)	intron (NM_134150, intron 1 of 6)	1682.0	NM_134150	107260.0	Mm.203921	NM_134150	ENSMUSG00000024767	Otub1	AI850305	OTU domain, ubiquitin aldehyde binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97546487-4	chr11	97545977	97546977	+	810.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 3 of 19)	CpG	28649.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110979555-7	chr5	110978987	110979987	+	810.904785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 2 of 22)	CpG	-24657.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	2.5	8.0	6.0	5.5	8.0	13.5
Merged-chr14-118507752-6	chr14	118507242	118508242	+	810.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163676, intron 25 of 29)	intron (NM_001163676, intron 25 of 29)	84730.0	NR_105815	102465208.0		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51092389-3	chr14	51092018	51093018	+	810.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021472, intron 1 of 1)	intron (NM_021472, intron 1 of 1)	1441.0	NM_021472	58809.0	Mm.202665	NM_021472	ENSMUSG00000021876	Rnase4	C730049F20Rik|Rab1	ribonuclease, RNase A family 4	protein-coding	28.0	48.5	38.5	26.0	66.5	39.0
Merged-chr1-134303810-3	chr1	134303316	134304316	+	810.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001144855, intron 24 of 28)	intron (NM_001144855, intron 24 of 28)	13812.0	NM_031189	17928.0	Mm.16528	NM_031189	ENSMUSG00000026459	Myog	MYF4|bHLHc3|myo	myogenin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-88772957-3	chr18	88772457	88773457	+	810.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121250.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99947600-3	chr7	99947101	99948101	+	810.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175388, intron 2 of 5)	intron (NM_175388, intron 2 of 5)	32857.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	0.5	11.0	0.0	3.5	4.0	4.0
Merged-chr2-38602899-3	chr2	38602370	38603370	+	810.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011187, intron 6 of 7)	intron (NM_011187, intron 6 of 7)	41036.0	NM_011187	19177.0	Mm.389251	NM_011187	ENSMUSG00000026750	Psmb7	AU020723|MC14	proteasome (prosome, macropain) subunit, beta type 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114667819-4	chr11	114667314	114668314	+	810.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023372)	promoter-TSS (NM_023372)	-729.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57563193-2	chr9	57562693	57563693	+	810.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_022813, intron 1 of 8)	intron (NM_022813, intron 1 of 8)	2249.0	NM_022813	24044.0	Mm.286069	NM_022813	ENSMUSG00000040188	Scamp2	AI875466|Sc2	secretory carrier membrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118682418-2	chr9	118681930	118682930	+	810.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 13 of 27)	intron (NM_133721, intron 13 of 27)	-29262.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	12.5	11.5	17.5	10.5	10.0	11.5
Merged-chr4-128726942-2	chr4	128726442	128727442	+	810.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195083)	promoter-TSS (NM_001195083)	-629.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51098484-3	chr14	51097984	51098984	+	810.833313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_201239, intron 1 of 1)	intron (NM_201239, intron 1 of 1)	2484.0	NM_201239	58809.0	Mm.202665	NM_021472	ENSMUSG00000021876	Rnase4	C730049F20Rik|Rab1	ribonuclease, RNase A family 4	protein-coding	0.0	18.0	15.5	1.5	7.5	0.0
Merged-chr2-122150083-3	chr2	122149580	122150580	+	810.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_009735, intron 1 of 3)	intron (NM_009735, intron 1 of 3)	2393.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	4.5	51.0	27.0	5.5	32.5	32.0
Merged-chr1-88276416-3	chr1	88275938	88276938	+	810.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172505, intron 2 of 4)	intron (NM_172505, intron 2 of 4)	1119.0	NM_172505	212427.0	Mm.384762	NM_172505		A730008H23Rik	Fleg1	RIKEN cDNA A730008H23 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43236192-4	chr5	43235692	43236692	+	810.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028417)	promoter-TSS (NR_028417)	-838.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-142813191-3	chr2	142812686	142813686	+	810.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 12 of 26)	intron (NM_001355123, intron 12 of 26)	88278.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88304510-3	chr10	88304007	88305007	+	810.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52568.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-111014379-3	chr7	111013884	111014884	+	810.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14567.0	NM_009431	22083.0	Mm.255858	NM_009431	ENSMUSG00000005609	Ctr9	AA409336|Sh2bp1|Tsbp|Tsp|mKIAA0155	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50244658-4	chr11	50244148	50245148	+	810.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6116.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47507644-8	chr19	47507169	47508169	+	810.791626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175360, intron 9 of 9)	intron (NM_175360, intron 9 of 9)	-5313.0	NR_045322	100503104.0	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59889543-3	chr10	59889038	59890038	+	810.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019965, intron 1 of 8)	intron (NM_019965, intron 1 of 8)	9947.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21804531-3	chr10	21804039	21805039	+	810.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77645.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86692108-4	chr11	86691618	86692618	+	810.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175004, exon 3 of 3)	3' UTR (NM_175004, exon 3 of 3)	8037.0	NM_001098810	217057.0	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91252698-4	chr1	91252284	91253284	+	810.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355764, intron 1 of 10)	intron (NM_001355764, intron 1 of 10)	2218.0	NM_001355764	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	33.5	45.5	26.0	10.5	48.0	19.0
Merged-chr4-122961099-2	chr4	122960599	122961599	+	810.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029662)	promoter-TSS (NM_029662)	89.0	NM_029662	76574.0	Mm.331842	NM_029662	ENSMUSG00000028655	Mfsd2a	1700018O18Rik|Mfsd2|NLS1	major facilitator superfamily domain containing 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121313342-2	chr9	121312842	121313842	+	810.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	B4A|SINE|B4	15840.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	9.0	23.0	11.0	5.0	21.0	8.0
Merged-chr3-61413786-2	chr3	61413286	61414286	+	810.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49279.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55459115-3	chr12	55458633	55459633	+	810.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33514.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-36072796-2	chr12	36072296	36073296	+	810.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-17583.0	NR_003649	432649.0	Mm.347860	NM_001014396	ENSMUSG00000059301	Gm5434	EG432649	ubiquitin-conjugating enzyme E2F (putative) pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96911566-2	chr11	96910947	96911947	+	810.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_030248, intron 8 of 13)	intron (NM_030248, intron 8 of 13)	5067.0	NM_001308183	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	0.0	0.0	0.0	0.0	8.5	0.5
Merged-chr15-13171303-4	chr15	13170800	13171800	+	810.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007666, intron 1 of 11)	intron (NM_007666, intron 1 of 11)	2375.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.0	0.0	0.0	0.0	3.0	0.0
Merged-chr12-85539849-2	chr12	85539349	85540349	+	810.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59256.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53115457-3	chr4	53114974	53115974	+	810.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	44421.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	18.0	23.5	24.0	19.0	25.0	28.5
Merged-chr3-65956115-3	chr3	65955588	65956588	+	810.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355433, intron 3 of 11)	intron (NM_001355433, intron 3 of 11)	2161.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	58.0	111.5	56.0	60.0	88.5	40.0
Merged-chr9-66361931-4	chr9	66361416	66362416	+	810.720825	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145617, intron 1 of 77)	RSINE1|SINE|B4	11466.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101901772-2	chr7	101901272	101902272	+	810.714294	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081679, intron 2 of 3)	L2c|LINE|L2	2013.0	NM_001282088	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86586192-4	chr6	86585753	86586753	+	810.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41921.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	13.0	53.0	30.5	19.5	59.0	36.0
Merged-chr6-67102964-3	chr6	67102425	67103425	+	810.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65518.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120934810-3	chr7	120934306	120935306	+	810.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025298, exon 13 of 21)	exon (NM_025298, exon 13 of 21)	17062.0	NM_001164096	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-105642635-6	chr7	105642181	105643181	+	810.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360053)	TTS (NM_001360053)	2236.0	NM_001360054	14356.0	Mm.220330	NM_019502	ENSMUSG00000089847	Timm10b	Fxc1|Tim10b|Tim9b	translocase of inner mitochondrial membrane 10B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-67609238-3	chr13	67608763	67609763	+	810.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163246, intron 1 of 3)	intron (NM_001163246, intron 1 of 3)	444.0	NM_001163246	100416706.0	Mm.478045	NM_001163246	ENSMUSG00000058093	Zfp729b	AA987127	zinc finger protein 729b	protein-coding	22.5	33.5	38.5	3.5	3.5	5.5
Merged-chr16-32945542-2	chr16	32945042	32946042	+	810.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081255, intron 1 of 20)	intron (NM_001081255, intron 1 of 20)	31442.0	NM_001310672	70144.0	Mm.491178	NM_001081255	ENSMUSG00000022801	Lrch3	2210409B11Rik|AW215594|Gm1742	leucine-rich repeats and calponin homology (CH) domain containing 3	protein-coding	0.0	9.0	6.0	0.0	7.0	3.0
Merged-chr14-70889224-3	chr14	70888786	70889786	+	810.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008115)	promoter-TSS (NM_008115)	-821.0	NM_001302095	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	5.5	3.0	6.0	8.5	38.0	30.5
Merged-chr2-35232162-4	chr2	35231667	35232667	+	810.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24192.0	NM_001206367	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62777682-2	chr9	62777182	62778182	+	810.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_176922, intron 28 of 29)	intron (NM_176922, intron 28 of 29)	33966.0	NM_010193	14155.0	Mm.24069	NM_010193	ENSMUSG00000032244	Fem1b	mKIAA0396	feminization 1 homolog b (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86576465-3	chr4	86575895	86576895	+	810.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178376, exon 1 of 1)	exon (NM_178376, exon 1 of 1)	722.0	NM_178376	68441.0	Mm.31178	NM_178376	ENSMUSG00000070934	Rraga	1300010C19Rik|AI255374|FIP-1|RAGA	Ras-related GTP binding A	protein-coding	6.0	9.5	5.0	0.0	3.5	13.0
Merged-chr4-33396682-4	chr4	33396186	33397186	+	810.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305273, intron 12 of 15)	intron (NM_001305273, intron 12 of 15)	-41395.0	NR_106198	102465904.0		NR_106198	ENSMUSG00000098310	Mir8118	Gm27954|mmu-mir-8118	microRNA 8118	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-87125697-3	chr14	87125213	87126213	+	810.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019670, intron 1 of 27)	B3|SINE|B2	15511.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	0.0	14.5	3.5	2.0	13.0	4.5
Merged-chr9-111096565-3	chr9	111096089	111097089	+	810.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21522.0	NM_027742	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98777028-4	chr11	98776519	98777519	+	810.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1642.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110403804-2	chr11	110403304	110404304	+	810.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	4702.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34809201-2	chr8	34808702	34809702	+	810.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_176933, intron 1 of 3)	CpG-13950	1592.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	0.0	3.0	10.0	2.0	7.0	1.0
Merged-chr15-42674975-3	chr15	42674490	42675490	+	810.666626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286062, intron 1 of 8)	intron (NM_001286062, intron 1 of 8)	1987.0	NM_001286062	11600.0	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103980376-6	chr11	103979946	103980946	+	810.638916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007477, intron 3 of 4)	MER77|LTR|ERVL	13575.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99641997-4	chr10	99641505	99642505	+	810.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038018)	promoter-TSS (NR_038018)	-85.0	NR_038018	100417125.0	Mm.391428	NR_038018	ENSMUSG00000112503	Gm18409	-	mediator of cell motility 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58798201-4	chr15	58797701	58798701	+	810.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175212, intron 1 of 6)	intron (NM_175212, intron 1 of 6)	25226.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100770989-3	chr11	100770496	100771496	+	810.616638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031871)	promoter-TSS (NM_031871)	-39.0	NM_031871	80860.0	Mm.37308	NM_031871	ENSMUSG00000017747	Ghdc	D11Lgp1e	GH3 domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-22299502-2	chr10	22299002	22300002	+	810.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-7218.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	2.0	2.5	0.0	4.5	0.0	4.0
Merged-chr4-111687185-4	chr4	111686681	111687681	+	810.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32829.0	NM_026470	67946.0	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-84813928-3	chr11	84813427	84814427	+	810.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145433, exon 5 of 5)	3' UTR (NM_145433, exon 5 of 5)	5588.0	NM_145433	217038.0	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik	mitochondrial rRNA methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-24770563-3	chr9	24770072	24771072	+	810.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194263, intron 2 of 7)	intron (NM_194263, intron 2 of 7)	3731.0	NM_020496	57246.0	Mm.31452	NM_020496	ENSMUSG00000031965	Tbx20	9430010M06Rik|AL022859|Tbx12	T-box 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-149323509-3	chr3	149323048	149324048	+	810.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48811.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.0	0.0	0.5	1.0	1.0	0.0
Merged-chr4-34238067-3	chr4	34237608	34238608	+	810.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-188041.0	NM_026293	67652.0	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128699449-3	chr2	128698994	128699994	+	810.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	579.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-54614402-3	chr9	54613898	54614898	+	810.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053178, intron 11 of 13)	intron (NM_053178, intron 11 of 13)	27887.0	NM_029573	67834.0	Mm.279195	NM_029573	ENSMUSG00000032279	Idh3a	1110003P10Rik|1500012E04Rik|AA407078|AI316514	isocitrate dehydrogenase 3 (NAD+) alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-22049876-3	chr13	22049402	22050402	+	810.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	6672.0	NM_178198	319183.0	Mm.371766	NM_178198	ENSMUSG00000069300	Hist1h2bj	-	histone cluster 1, H2bj	protein-coding	12.5	5.5	8.5	7.5	2.0	4.5
Merged-chr6-33929802-6	chr6	33929320	33930320	+	810.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 17 of 17)	intron (NM_009148, intron 17 of 17)	-99628.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50431625-4	chr11	50431101	50432101	+	810.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172557)	promoter-TSS (NM_172557)	-490.0	NM_172557	216724.0	Mm.390400	NM_172557	ENSMUSG00000020375	Rufy1	3000002E04Rik|Rabip4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132333800-4	chr1	132333289	132334289	+	810.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028778)	TTS (NM_028778)	17664.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-176996971-4	chr1	176996488	176997488	+	810.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 17 of 18)	intron (NM_001357390, intron 17 of 18)	-160855.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151614783-4	chr1	151614336	151615336	+	810.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	43463.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148586846-4	chr2	148586349	148587349	+	810.516663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85766.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135889604-3	chr7	135889155	135890155	+	810.516663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-173276.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-57899107-2	chr18	57898607	57899607	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009194, intron 4 of 26)	intron (NM_009194, intron 4 of 26)	20429.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36625945-2	chr16	36625445	36626445	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 2 of 7)	intron (NM_019388, intron 2 of 7)	40132.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-13034089-2	chr7	13033589	13034589	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153796, intron 1 of 3)	intron (NR_153796, intron 1 of 3)	688.0	NM_001360733	68953.0	Mm.295670	NM_026885	ENSMUSG00000033916	Chmp2a	1500016L11Rik|mVps2	charged multivesicular body protein 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21160572-2	chr9	21160072	21161072	+	810.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5142.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4523361-2	chr7	4522861	4523861	+	810.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009406)	promoter-TSS (NM_009406)	-833.0	NM_009406	21954.0	Mm.27674	NM_009406	ENSMUSG00000035458	Tnni3	Tn1|cTnI	troponin I, cardiac 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-40402484-1	chr11	40401984	40402984	+	810.5	f0_balb.idr	Intergenic	Intergenic	290198.0	NM_134017	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr1-180817653-2	chr1	180817153	180818153	+	810.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4048.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61341696-2	chr10	61341196	61342196	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013753, intron 15 of 19)	intron (NM_013753, intron 15 of 19)	41827.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19215228-2	chr3	19214728	19215728	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356295, intron 4 of 7)	intron (NM_001356295, intron 4 of 7)	26933.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141149565-2	chr4	141149065	141150065	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172518, intron 1 of 9)	intron (NM_172518, intron 1 of 9)	1643.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76518366-2	chr15	76517866	76518866	+	810.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_130893, exon 2 of 2)	3' UTR (NM_130893, exon 2 of 2)	3763.0	NM_130893	170729.0	Mm.218747	NM_130893	ENSMUSG00000048385	Scrt1	-	scratch family zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5685533-2	chr19	5685033	5686033	+	810.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_144868, exon 6 of 35)	exon (NM_144868, exon 6 of 35)	3375.0	NM_144868	104401.0	Mm.329650	NM_144868	ENSMUSG00000054874	Pcnx3	Pcnxl3|mKIAA4073	pecanex homolog 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103332931-2	chr15	103332431	103333431	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356627, intron 2 of 7)	intron (NM_001356627, intron 2 of 7)	1407.0	NM_001356627	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94777905-2	chr8	94777405	94778405	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009142, intron 1 of 2)	intron (NM_009142, intron 1 of 2)	5725.0	NM_009142	20312.0	Mm.103711	NM_009142	ENSMUSG00000031778	Cx3cl1	AB030188|ABCD-3|AI848747|CX3C|Cxc3|D8Bwg0439e|Scyd1	chemokine (C-X3-C motif) ligand 1	protein-coding	0.0	0.0	0.0	0.0	2.5	3.0
Merged-chr6-134321697-3	chr6	134321317	134322317	+	810.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153848, intron 3 of 8)	MTEa|LTR|ERVL-MaLR	-74512.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	4.0	7.5	1.5	14.5	12.0	7.5
Merged-chr15-52709974-2	chr15	52709474	52710474	+	810.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2471.0	NM_027212	69790.0	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-117278386-2	chr6	117277886	117278886	+	810.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	109851.0	NM_021704	20315.0	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13781663-2	chr16	13781163	13782163	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039521, intron 1 of 17)	intron (NM_001039521, intron 1 of 17)	964.0	NM_001039521	106298.0	Mm.288606	NM_001039521	ENSMUSG00000022682	Rrn3	AL023001|E130302O19Rik|R75565|TIF-1A|Tif1a	RRN3 RNA polymerase I transcription factor homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130257910-2	chr5	130257410	130258410	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153350, intron 1 of 15)	intron (NR_153350, intron 1 of 15)	873.0	NM_001015876	100929.0	Mm.271296	NM_178897	ENSMUSG00000056310	Tyw1	AW125391|Rsafd1	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-23153258-2	chr19	23152758	23153758	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010638, intron 1 of 1)	B2_Mm2|SINE|B2	3827.0	NR_035423	100316672.0		NR_035423	ENSMUSG00000080626	Mir1192	Mirn1192|mmu-mir-1192	microRNA 1192	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3849132-2	chr19	3848632	3849632	+	810.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2641.0	NM_001271496	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139725187-4	chr5	139724681	139725681	+	810.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174850, intron 1 of 16)	intron (NM_174850, intron 1 of 16)	11152.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	4.5	18.5	17.0	10.5	20.0	11.0
Merged-chr5-121811967-2	chr5	121811467	121812467	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359153, intron 22 of 23)	intron (NM_001359153, intron 22 of 23)	7306.0	NR_105998	102465624.0		NR_105998	ENSMUSG00000099063	Mir7031	Gm27859|mmu-mir-7031	microRNA 7031	ncRNA	0.0	6.0	5.5	0.5	18.0	4.0
Merged-chr8-84064842-2	chr8	84064360	84065360	+	810.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1976.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	2.5	10.5	10.0	10.0	12.0	7.5
Merged-chr11-87427479-2	chr11	87426979	87427979	+	810.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199293)	promoter-TSS (NM_001199293)	-112.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181591896-2	chr2	181591396	181592396	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164597, intron 1 of 16)	intron (NM_001164597, intron 1 of 16)	565.0	NM_001164597	269401.0	Mm.386888	NM_001164597	ENSMUSG00000000823	Zfp512b	Gm632|Znf512b	zinc finger protein 512B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-33251472-2	chr14	33250972	33251972	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	34649.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115613048-2	chr8	115612548	115613548	+	810.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	93846.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-128012872-2	chr1	128012372	128013372	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 8 of 20)	intron (NM_001285945, intron 8 of 20)	89599.0	NM_027678	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-109394072-2	chr12	109393572	109394572	+	810.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58751.0	NR_033813	13386.0	Mm.157069	NM_010052	ENSMUSG00000040856	Dlk1	AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1	delta like non-canonical Notch ligand 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122117514-2	chr2	122117014	122118014	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145531, intron 1 of 39)	intron (NM_145531, intron 1 of 39)	872.0	NM_145531	214585.0	Mm.222303	NM_145531	ENSMUSG00000033396	Spg11	6030465E24Rik|A330015I11|C530005A01Rik	SPG11, spatacsin vesicle trafficking associated	protein-coding	32.5	35.5	25.5	21.0	25.0	29.5
Merged-chr8-56295312-4	chr8	56294817	56295817	+	810.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008278, intron 2 of 6)	intron (NM_008278, intron 2 of 6)	765.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-36473822-2	chr3	36473322	36474322	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009673, intron 2 of 12)	intron (NM_009673, intron 2 of 12)	1702.0	NR_105976	102466786.0		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44295406-2	chr19	44294906	44295906	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009128, intron 2 of 5)	intron (NM_009128, intron 2 of 5)	1730.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	0.0	7.5	4.5	0.0	0.0	10.5
Merged-chr17-25874307-2	chr17	25873807	25874807	+	810.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	X5B_LINE|LINE|CR1	-1193.0	NM_026686	68347.0	Mm.35098	NM_026686	ENSMUSG00000025731	Mettl26	0610011F06Rik	methyltransferase like 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6237193-2	chr19	6236693	6237693	+	810.474976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1353.0	NM_198168	225849.0	Mm.118076	NM_198168	ENSMUSG00000024777	Ppp2r5b	B'beta|BC026670	protein phosphatase 2, regulatory subunit B', beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-100499110-3	chr9	100498610	100499610	+	810.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010878, intron 2 of 3)	L1M4|LINE|L1	7746.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	1.5	19.0	1.0	0.0	2.5	2.5
Merged-chr11-100695142-3	chr11	100694654	100695654	+	810.466675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_030150, exon 13 of 13)	3' UTR (NM_030150, exon 13 of 13)	9117.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	0.0	1.5	2.0	0.0	0.0	1.0
Merged-chr18-34222269-4	chr18	34221801	34222801	+	810.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040534)	promoter-TSS (NR_040534)	-529.0	NR_040534	633395.0	Mm.414290	NR_040534	ENSMUSG00000073607	Gm10548	-	ribosomal protein L29 pseudogene	pseudo	40.0	72.5	43.0	19.5	40.5	41.5
Merged-chr8-125782581-4	chr8	125782052	125783052	+	810.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175561, intron 25 of 33)	intron (NM_175561, intron 25 of 33)	48349.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173877357-4	chr1	173876852	173877852	+	810.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170853, intron 2 of 9)	intron (NM_001170853, intron 2 of 9)	2835.0	NM_001170853	100040462.0	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	5.5	10.5	8.0	6.5	4.5	5.5
Merged-chr15-98799630-3	chr15	98799132	98800132	+	810.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8293.0	NM_001013741	13199.0	Mm.390810	NM_001013741	ENSMUSG00000059213	Ddn	Gm748	dendrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120871544-3	chr7	120871041	120872041	+	810.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267710, intron 2 of 17)	MLT1A|LTR|ERVL-MaLR	20352.0	NM_001267711	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74921475-3	chr15	74921001	74922001	+	810.444458	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33550.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	16.5	39.5	23.0	0.5	48.0	15.0
Merged-chr13-91362134-3	chr13	91361647	91362647	+	810.43335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25938.0	NR_045161	320297.0	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90243134-4	chr9	90242647	90243647	+	810.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 2 of 12)	intron (NM_194334, intron 2 of 12)	27622.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49967296-4	chr16	49966820	49967820	+	810.412476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	11490.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110652490-4	chr9	110651998	110652998	+	810.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183276, intron 1 of 53)	intron (NM_183276, intron 1 of 53)	1663.0	NM_183276	235627.0	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding	1.5	0.0	3.0	0.0	1.0	0.0
Merged-chr10-70250947-4	chr10	70250445	70251445	+	810.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025807, intron 1 of 5)	intron (NM_025807, intron 1 of 5)	5669.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125731744-2	chr8	125731244	125732244	+	810.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2459.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30434386-2	chr7	30433886	30434886	+	810.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007467)	TTS (NM_007467)	11111.0	NM_172142	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	1.0	1.0	0.0	0.0	2.0	0.0
Merged-chr2-62573612-2	chr2	62573112	62574112	+	810.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007986, intron 1 of 25)	intron (NM_007986, intron 1 of 25)	409.0	NM_007986	14089.0	Mm.41816	NM_007986	ENSMUSG00000000392	Fap	SIMP	fibroblast activation protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146733148-2	chr5	146732661	146733661	+	810.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61795.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	3.0	0.0	4.5	1.5	1.0	1.0
Merged-chr19-10019300-2	chr19	10018775	10019775	+	810.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_153790, intron 1 of 10)	intron (NR_153790, intron 1 of 10)	1081.0	NM_001347430	74760.0	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	15.0	9.5	4.0	4.5	0.5	3.5
Merged-chr12-32793918-3	chr12	32793435	32794435	+	810.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26400.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.0	7.5	5.5	9.5	24.0	14.0
Merged-chr15-34031589-1	chr15	34031089	34032089	+	810.333313	f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-51130.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	12.5	14.0	20.5	11.0	9.0	2.5
Merged-chr18-7756982-3	chr18	7756482	7757482	+	810.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111850.0	NM_001282093	225131.0	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-141862968-4	chr3	141862457	141863457	+	810.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355043, intron 6 of 10)	intron (NM_001355043, intron 6 of 10)	68463.0	NM_001355043	12167.0	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-151748701-4	chr3	151748238	151749238	+	810.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133871, intron 2 of 7)	intron (NM_133871, intron 2 of 7)	1221.0	NM_133871	99899.0	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	3.0	11.5	12.0	8.0	18.5	16.0
Merged-chr1-131977932-5	chr1	131977408	131978408	+	810.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145977, exon 3 of 5)	exon (NM_145977, exon 3 of 5)	7299.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-43448244-1	chr16	43447744	43448744	+	810.333313	f0_balb.idr	intron (NM_181058, intron 2 of 6)	ORR1E|LTR|ERVL-MaLR	-28048.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47600151-4	chr17	47599640	47600640	+	810.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081636)	TTS (NM_001081636)	6673.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37317312-4	chr1	37316821	37317821	+	810.270813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	17483.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37059796-3	chr19	37059267	37060267	+	810.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198300, intron 8 of 10)	intron (NM_198300, intron 8 of 10)	-114076.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	44.5	62.0	54.0	10.5	37.0	22.5
Merged-chr12-117478220-4	chr12	117477788	117478788	+	810.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-38191.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	4.0	1.0	4.5	0.0	1.0	0.0
Merged-chr12-104174463-2	chr12	104173953	104174953	+	810.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20581.0	NM_008458	16625.0	Mm.422814	NM_008458	ENSMUSG00000066361	Serpina3c	1A1|Kalbp|Klkbp|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3C	protein-coding	22.0	23.0	44.0	30.5	90.5	63.5
Merged-chr7-99092230-2	chr7	99091730	99092730	+	810.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 4 of 14)	L1MD|LINE|L1	48914.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	8.0	33.0	13.5	23.5	26.5	21.5
Merged-chr10-13913897-4	chr10	13913407	13914407	+	810.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	42627.0	NR_152745	102634635.0		NR_152745	ENSMUSG00000112172	Gm32172	-	predicted gene, 32172	ncRNA	0.0	1.0	0.0	1.5	0.0	0.0
Merged-chr15-73072832-2	chr15	73072332	73073332	+	810.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11628.0	NM_001164643	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	0.0	0.0	4.5	0.0	0.0	0.0
Merged-chr10-94487108-5	chr10	94486553	94487553	+	810.233337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-27804.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-110905693-3	chr13	110905198	110906198	+	810.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131193, intron 3 of 4)	L1MA4|LINE|L1	-1852.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83013705-3	chr6	83013218	83014218	+	810.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 7 of 9)	intron (NM_033079, intron 7 of 9)	19753.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	0.0	1.0	1.5	11.0	1.5	18.0
Merged-chr6-98985633-4	chr6	98985124	98986124	+	810.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 8 of 17)	intron (NM_001197321, intron 8 of 17)	42674.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76549374-3	chr12	76548807	76549807	+	810.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	L2c|LINE|L2	-1382.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-123262096-4	chr6	123261605	123262605	+	810.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010819)	promoter-TSS (NM_010819)	-2.0	NM_001163161	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-37022856-4	chr17	37022396	37023396	+	810.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010814, intron 1 of 7)	ID4_|SINE|ID	502.0	NM_010814	17441.0	Mm.210857	NM_010814	ENSMUSG00000076439	Mog	B230317G11Rik	myelin oligodendrocyte glycoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-77644531-3	chr16	77644028	77645028	+	810.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1745.0	NR_029540	723952.0		NR_029540	ENSMUSG00000065472	Mir125b-2	Mirn125b-2|mir-125b-2	microRNA 125b-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83440940-2	chr11	83440443	83441443	+	810.166687	f0_balb.idr|f0_c57.idr	3' UTR (NM_172797, exon 8 of 8)	3' UTR (NM_172797, exon 8 of 8)	3249.0	NM_025492	66330.0	Mm.44800	NM_025492	ENSMUSG00000035085	1700020L24Rik	-	RIKEN cDNA 1700020L24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77967313-2	chr11	77966813	77967813	+	810.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_021286, intron 4 of 16)	intron (NM_021286, intron 4 of 16)	-15503.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56274711-4	chr17	56274244	56275244	+	810.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174989, intron 1 of 1)	ID_B1|SINE|B4	2023.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118821745-3	chr9	118821217	118822217	+	810.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 4 of 13)	intron (NM_001113514, intron 4 of 13)	-104819.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	10.5	8.0	8.5	7.5	3.0	5.5
Merged-chr14-33392975-3	chr14	33392473	33393473	+	810.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016700, exon 6 of 12)	exon (NM_016700, exon 6 of 12)	18051.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128719514-2	chr4	128719014	128720014	+	810.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 7 of 14)	intron (NM_018774, intron 7 of 14)	-8057.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114806714-2	chr5	114806214	114807214	+	810.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026718)	TTS (NM_026718)	7262.0	NR_027818	66236.0	Mm.268546	NR_027817	ENSMUSG00000072694	1500011B03Rik	AI415201|AV141149|AW556386	RIKEN cDNA 1500011B03 gene	ncRNA	3.0	2.5	3.5	6.0	7.5	3.0
Merged-chr1-88695279-4	chr1	88694771	88695771	+	810.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6920.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90524720-2	chr2	90524171	90525171	+	810.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-45497.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	38.5	50.0	22.0	18.0	31.5	20.5
Merged-chr5-35727675-3	chr5	35727173	35728173	+	810.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359895, intron 1 of 17)	intron (NM_001359895, intron 1 of 17)	1603.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-5750148-3	chr5	5749648	5750648	+	810.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027399)	promoter-TSS (NM_027399)	-831.0	NM_027399	70358.0	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-8785482-3	chr13	8784940	8785940	+	810.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85604.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-121572004-3	chr2	121571506	121572506	+	810.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360084, intron 6 of 13)	intron (NM_001360084, intron 6 of 13)	65283.0	NM_001290986	241627.0	Mm.293284	NM_030234	ENSMUSG00000027242	Wdr76	5830411K18Rik|6030457D09|AA517836	WD repeat domain 76	protein-coding	6.5	0.0	5.0	5.0	0.0	7.0
Merged-chr13-23685791-6	chr13	23685481	23686481	+	810.105591	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023422, intron 1 of 1)	(TG)n|Simple_repeat|Simple_repeat	1782.0	NM_023422	68024.0	Mm.261676	NM_023422	ENSMUSG00000018102	Hist1h2bc	2610022J01Rik|H2bfs|R74621	histone cluster 1, H2bc	protein-coding	17.5	57.5	31.5	6.5	32.0	44.0
Merged-chr13-5791133-2	chr13	5790633	5791633	+	810.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66959.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-89643809-6	chr1	89643292	89644292	+	810.055542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 6 of 16)	intron (NM_001037136, intron 6 of 16)	40100.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77566899-4	chr10	77566425	77567425	+	810.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14730.0	NM_145925	108705.0	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540|PBF	pituitary tumor-transforming 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50685229-4	chr6	50684757	50685757	+	810.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30864.0	NM_021892	60531.0	Mm.157158	NM_021892	ENSMUSG00000029831	Npvf	Rfrp	neuropeptide VF precursor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101976464-2	chr11	101975964	101976964	+	810.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028207, intron 2 of 2)	intron (NM_028207, intron 2 of 2)	8327.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10975114-2	chr16	10974620	10975620	+	810.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	GSAT_MM|Satellite|Satellite	18001.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72937483-1	chr6	72936983	72937983	+	810.0	f1_balb.idr	Intergenic	Intergenic	20749.0	NM_001039392	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	4.0	5.5	1.5	9.0	18.5	2.5
Merged-chr16-23897418-2	chr16	23896918	23897918	+	810.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6574.0	NM_009215	20604.0	Mm.2453	NM_009215	ENSMUSG00000004366	Sst	SOM|SRIF|SS|Smst	somatostatin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111645884-2	chr8	111645384	111646384	+	810.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358993, intron 1 of 3)	MLTR25C|LTR|ERVK	2441.0	NM_011742	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	1.5	17.5	0.0	5.0	3.0	2.5
Merged-chr10-5193642-3	chr10	5193142	5194142	+	810.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079686, intron 1 of 54)	URR1A|DNA|hAT-Charlie	1065.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75372149-3	chr7	75371638	75372638	+	810.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62876.0	NM_153579	64176.0	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21815069-4	chr16	21814556	21815556	+	810.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4c|LINE|L1	20709.0	NR_037957	100043489.0	Mm.326535	NR_037957	ENSMUSG00000097290	1300002E11Rik	1500026P21Rik	RIKEN cDNA 1300002E11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43033022-2	chr4	43032522	43033522	+	810.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045567, exon 8 of 8)	non-coding (NR_045567, exon 8 of 8)	-1638.0	NM_023231	66592.0	Mm.331565	NM_023231	ENSMUSG00000028455	Stoml2	0610038F01Rik|MSLP2|SLP-2	stomatin (Epb7.2)-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-89977969-2	chr11	89977436	89978436	+	810.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	24958.0	NM_008796	18559.0	Mm.5062	NM_008796	ENSMUSG00000020553	Pctp	PC-TP|StarD2	phosphatidylcholine transfer protein	protein-coding	5.0	28.0	19.5	3.5	2.0	2.0
Merged-chr4-59187578-2	chr4	59187078	59188078	+	810.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1972.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64277885-2	chr9	64277384	64278384	+	810.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3701.0	NM_025372	66131.0	Mm.196219	NM_025372	ENSMUSG00000032397	Tipin	1110005A05Rik|1110018P21Rik	timeless interacting protein	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr2-6460407-3	chr2	6459883	6460883	+	810.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	107647.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110269797-2	chr7	110269297	110270297	+	810.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009302, intron 6 of 11)	intron (NM_009302, intron 6 of 11)	48094.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143042594-1	chr7	143042094	143043094	+	810.0	f1_c57bl6.idr	intron (NR_110355, intron 2 of 4)	intron (NR_110355, intron 2 of 4)	-10156.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	37.5	90.0	80.0	52.0	117.5	112.5
Merged-chr1-61690861-3	chr1	61690376	61691376	+	810.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081050, intron 1 of 22)	MIR|SINE|MIR	52052.0	NM_001081050	72823.0	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45090783-2	chr2	45090283	45091283	+	810.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	ID_B1|SINE|B4	19494.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-48576950-1	chr9	48576450	48577450	+	810.0	f1_c57bl6.idr	Intergenic	B4|SINE|B4	28173.0	NM_010924	18113.0	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	16.0	25.5	15.5	1.0	10.5	7.5
Merged-chr6-120149497-2	chr6	120148997	120149997	+	810.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	URR1A|DNA|hAT-Charlie	-44326.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-56481134-2	chr6	56480634	56481634	+	810.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111500.0	NM_001159955	18575.0	Mm.5145	NM_011054	ENSMUSG00000004347	Pde1c	-	phosphodiesterase 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99186479-2	chr7	99185979	99186979	+	810.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-3766.0	NM_026384	67800.0	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	1.0	0.0	1.0	1.0	0.0	1.5
Merged-chr13-63148289-1	chr13	63147789	63148789	+	810.0	f0_balb.idr	intron (NM_001289926, intron 5 of 15)	intron (NM_001289926, intron 5 of 15)	-91740.0	NR_110520	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	2.0	0.0	0.0	8.0	1.0	1.5
Merged-chr15-81766569-1	chr15	81766069	81767069	+	810.0	f1_c57bl6.idr	intron (NM_001081016, intron 1 of 22)	intron (NM_001081016, intron 1 of 22)	21721.0	NM_001081016	20286.0	Mm.432075	NM_001081016	ENSMUSG00000022390	Zc3h7b	Gm627|Scrg3|Zc2h7b|mKIAA1031	zinc finger CCCH type containing 7B	protein-coding	0.0	0.0	1.0	0.5	0.0	0.0
Merged-chr3-95860559-2	chr3	95860059	95861059	+	810.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4674.0	NR_151629	70767.0	Mm.279872	NM_027541	ENSMUSG00000015748	Prpf3	3632413F13Rik	pre-mRNA processing factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-34022118-4	chr15	34021624	34022624	+	810.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60595.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0.0	13.0	0.5	0.5	0.0	2.5
Merged-chr9-71140731-2	chr9	71140231	71141231	+	810.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_073483, intron 1 of 6)	intron (NR_073483, intron 1 of 6)	21902.0	NM_001271843	64008.0	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155058123-2	chr1	155057623	155058623	+	810.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	25141.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-52172503-1	chr9	52172003	52173003	+	810.0	f0_balb.idr	Intergenic	Intergenic	-4392.0	NM_001162921	244871.0	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	0.0	3.0	5.0	15.0	11.5	11.0
Merged-chr10-87757234-2	chr10	87756734	87757734	+	810.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101031.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	2.0	8.0	0.0	1.5	5.5	3.0
Merged-chr6-31613826-2	chr6	31613326	31614326	+	810.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38859.0	NR_153845	105242621.0	Mm.389732	NR_153845		Gm6117	EG619959	predicted gene 6117	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-73649720-2	chr16	73649220	73650220	+	810.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	692347.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25580691-4	chr2	25580118	25581118	+	810.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005424)	promoter-TSS (NM_001005424)	-519.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50038443-2	chr6	50037943	50038943	+	810.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71798.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	10.5	12.5	4.5	12.0	22.5	3.5
Merged-chr19-56701048-1	chr19	56700548	56701548	+	810.0	f0_balb.idr	Intergenic	Intergenic	-21324.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4511243-2	chr19	4510743	4511743	+	810.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162946, intron 1 of 20)	intron (NM_001162946, intron 1 of 20)	771.0	NM_001162946	18563.0	Mm.1845	NM_008797	ENSMUSG00000024892	Pcx	Pc|Pcb	pyruvate carboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87459773-2	chr6	87459273	87460273	+	810.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_104483, exon 11 of 11)	non-coding (NR_104483, exon 11 of 11)	30779.0	NM_009756	12154.0	Mm.483321	NM_009756	ENSMUSG00000030046	Bmp10	b2b2711Clo	bone morphogenetic protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-107982438-2	chr5	107981938	107982938	+	810.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	intron (NM_026062, intron 1 of 4)	4639.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	9.5	2.5	0.0	2.0	0.0	0.0
Merged-chr2-35108941-1	chr2	35108441	35109441	+	810.0	f0_balb.idr	promoter-TSS (NM_012018)	promoter-TSS (NM_012018)	-551.0	NM_012018	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141122749-2	chr7	141122249	141123249	+	810.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-4943.0	NM_178381	71345.0	Mm.235813	NM_178381	ENSMUSG00000054662	Ano9	5430425C04Rik|Tmem16j|Tp53i5|Trp53i5	anoctamin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124016725-2	chr5	124016225	124017225	+	810.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	15535.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	1.0	2.5	5.5	1.0	2.5	5.5
Merged-chr5-115485406-2	chr5	115484906	115485906	+	810.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133760)	promoter-TSS (NM_133760)	-922.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	1.0	2.0	1.0	2.5	2.0	3.0
Merged-chr17-28690307-2	chr17	28689807	28690807	+	810.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290320)	promoter-TSS (NM_001290320)	-320.0	NM_001290320	224661.0		NM_146076	ENSMUSG00000036196	Slc26a8	-	solute carrier family 26, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33996517-3	chr17	33996069	33997069	+	810.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001892, intron 7 of 7)	intron (NM_001001892, intron 7 of 7)	3764.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	4.0	22.0	22.0	4.0	15.5	14.5
Merged-chr12-112799882-2	chr12	112799382	112800382	+	810.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9093.0	NM_145450	217887.0	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Clba1|Flj20080	cDNA sequence BC022687	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35867710-4	chr17	35867218	35868218	+	809.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175242, exon 1 of 3)	exon (NM_175242, exon 1 of 3)	1103.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	11.5	40.5	23.0	28.5	36.0	25.0
Merged-chr5-146706189-3	chr5	146705707	146706707	+	809.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88749.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0.0	1.5	1.0	0.0	1.5	0.5
Merged-chr9-114527190-3	chr9	114526663	114527663	+	809.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042503, intron 1 of 3)	intron (NM_001042503, intron 1 of 3)	-30619.0	NM_009916	12773.0	Mm.1337	NM_009916	ENSMUSG00000047898	Ccr4	C-C CKR-4|CHEMR1|Cmkbr4|LESTR|Sdf1r	chemokine (C-C motif) receptor 4	protein-coding	0.0	4.5	0.0	0.0	0.5	0.0
Merged-chr19-40673556-4	chr19	40673118	40674118	+	809.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	L2a|LINE|L2	13848.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	4.5	43.5	27.0	11.5	27.5	19.0
Merged-chr15-78272876-2	chr15	78272376	78273376	+	809.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	11973.0	NR_106137	102465776.0		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	0.0	0.0	4.0	0.0	0.0	4.0
Merged-chr8-83140202-3	chr8	83139684	83140684	+	809.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-25168.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	85.0	129.5	98.5	92.0	161.5	104.5
Merged-chr5-74954044-3	chr5	74953532	74954532	+	809.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045866, intron 1 of 4)	intron (NR_045866, intron 1 of 4)	4838.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-106027007-3	chr12	106026516	106027516	+	809.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029843, intron 1 of 13)	intron (NM_001029843, intron 1 of 13)	16753.0	NM_001029843	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	1.0	14.0	7.0	0.5	1.5	7.0
Merged-chr5-96172029-3	chr5	96171531	96172531	+	809.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10041.0	NM_144910	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9826445-3	chr13	9825923	9826923	+	809.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-61102.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120828466-3	chr8	120827965	120828965	+	809.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89826.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120853731-4	chr11	120853252	120854252	+	809.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027745, intron 18 of 18)	intron (NM_027745, intron 18 of 18)	-29205.0	NM_007988	14104.0	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12808938-4	chr18	12808402	12809402	+	809.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252490, intron 3 of 13)	intron (NM_001252490, intron 3 of 13)	11005.0	NR_045524	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20814923-2	chr18	20814423	20815423	+	809.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68519.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105930818-4	chr8	105930317	105931317	+	809.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173432, exon 3 of 3)	3' UTR (NM_173432, exon 3 of 3)	3045.0	NM_023182	109660.0	Mm.2745	NM_023182	ENSMUSG00000031896	Ctrl	0910001G08Rik|1810004D15Rik|AV005227|Ctra-1|Ctra1|chymopasin|mFLJ00366	chymotrypsin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-23675316-4	chr5	23674852	23675852	+	809.854187	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359174, intron 2 of 16)	CpG	615.0	NM_001359174	20817.0	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	0.0	1.0	1.0	0.0	0.0	3.5
Merged-chr5-123017427-2	chr5	123016927	123017927	+	809.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175423, intron 1 of 1)	intron (NM_175423, intron 1 of 1)	2353.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60802053-3	chr18	60801549	60802549	+	809.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30|LTR|ERV1	-1800.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	19.5	34.5	22.5	16.5	32.5	6.5
Merged-chr11-104440692-4	chr11	104440186	104441186	+	809.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 2 of 14)	intron (NM_001359634, intron 2 of 14)	1605.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8522946-5	chr12	8522471	8523471	+	809.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	16595.0	NM_001038660	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	3.0	10.5	6.5	10.0	9.5	11.0
Merged-chr2-145804118-4	chr2	145803632	145804632	+	809.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	18016.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57393405-3	chr16	57392913	57393913	+	809.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	40136.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-3009206-1	chr18	3008706	3009706	+	809.799988	f1_balb.idr	Intergenic	RLTR30|LTR|ERV1	114206.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107514927-2	chr9	107514477	107515477	+	809.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001174048, intron 15 of 37)	intron (NM_001174048, intron 15 of 37)	-18968.0	NM_019704	56395.0	Mm.260153	NM_019704	ENSMUSG00000010045	Tmem115	C78915|Pl6|Pp6	transmembrane protein 115	protein-coding	3.0	0.0	0.0	0.0	0.0	6.5
Merged-chr9-3030179-4	chr9	3029686	3030686	+	809.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	8557.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104079561-3	chr9	104079053	104080053	+	809.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175324, intron 5 of 19)	B3|SINE|B2	15850.0	NM_175324	102632.0	Mm.41274	NM_175324	ENSMUSG00000090150	Acad11	5730439E10Rik|AI987948	acyl-Coenzyme A dehydrogenase family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28826067-3	chr7	28825514	28826514	+	809.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016772, exon 2 of 10)	exon (NM_016772, exon 2 of 10)	676.0	NM_016772	51798.0	Mm.291776	NM_016772	ENSMUSG00000053898	Ech1	AA617331	enoyl coenzyme A hydratase 1, peroxisomal	protein-coding	1.5	20.0	15.0	7.5	17.0	12.5
Merged-chr14-55491010-3	chr14	55490510	55491510	+	809.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024645)	promoter-TSS (NM_001024645)	-60.0	NM_001024645	268747.0	Mm.151577	NM_001024645	ENSMUSG00000022211	Carmil3	Lrrc16b|mFLJ00240	capping protein regulator and myosin 1 linker 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-78923959-3	chr12	78923464	78924464	+	809.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17026.0	NM_013738	27260.0	Mm.103380	NM_013738	ENSMUSG00000021118	Plek2	-	pleckstrin 2	protein-coding	5.5	6.5	2.0	8.5	4.0	6.0
Merged-chr15-88837497-3	chr15	88837066	88838066	+	809.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	17920.0	NM_029720	76737.0	Mm.292567	NM_029720	ENSMUSG00000023272	Creld2	5730592L21Rik|C85758	cysteine-rich with EGF-like domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46740959-3	chr18	46740451	46741451	+	809.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303015)	promoter-TSS (NM_001303015)	628.0	NM_026217	67526.0	Mm.9852	NM_026217	ENSMUSG00000032905	Atg12	4931423H11Rik|A330058M13Rik|Apg12l|Atg12l	autophagy related 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9821413-3	chr18	9820913	9821913	+	809.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	113765.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	0.0	0.5	0.0	0.5	2.5	0.0
Merged-chr17-28880006-3	chr17	28879501	28880501	+	809.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034885, intron 5 of 9)	intron (NM_001034885, intron 5 of 9)	21590.0	NM_001034885	433091.0	Mm.328925	NM_001034885	ENSMUSG00000043286	Pnpla1	-	patatin-like phospholipase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59540803-3	chr9	59540356	59541356	+	809.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010421, intron 1 of 13)	ID_B1|SINE|B4	1316.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-117543574-3	chr6	117543076	117544076	+	809.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48341.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142402421-2	chr5	142401921	142402921	+	809.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 1 of 8)	intron (NM_199068, intron 1 of 8)	924.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84090641-2	chr17	84090141	84091141	+	809.75	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045458)	TTS (NR_045458)	11981.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45169767-2	chr7	45169267	45170267	+	809.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_182993, intron 2 of 11)	intron (NM_182993, intron 2 of 11)	-3536.0	NR_106022	102465638.0		NR_106022	ENSMUSG00000106470	Mir7055	mmu-mir-7055	microRNA 7055	ncRNA	0.0	0.0	0.0	2.0	1.0	0.0
Merged-chr5-36751206-2	chr5	36750706	36751706	+	809.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2527.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107242019-3	chr11	107241567	107242567	+	809.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 6 of 9)	PB1D10|SINE|Alu	-52686.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-33227197-4	chr19	33226693	33227693	+	809.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146342, intron 2 of 4)	intron (NM_001146342, intron 2 of 4)	70081.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71433116-2	chr8	71432612	71433612	+	809.75	f0_c57.idr|f1_c57bl6.idr	Intergenic	(TTAGGG)n|Simple_repeat|Simple_repeat	27100.0	NM_172756	234396.0	Mm.216549	NM_172756	ENSMUSG00000046295	Ankle1	8430438L13Rik|Ankrd41|C430003I23|Lem3	ankyrin repeat and LEM domain containing 1	protein-coding	5.5	0.0	1.0	1.5	0.0	0.0
Merged-chr11-118460928-2	chr11	118460428	118461428	+	809.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5933.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86389435-4	chr1	86388929	86389929	+	809.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001319227)	promoter-TSS (NM_001319227)	-68.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131423770-3	chr2	131423274	131424274	+	809.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-68088.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10695173-3	chr16	10694673	10695673	+	809.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177562, intron 21 of 22)	intron (NM_177562, intron 21 of 22)	90363.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114722606-2	chr11	114722106	114723106	+	809.716675	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4806.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110768614-4	chr7	110768175	110769175	+	809.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276301, intron 1 of 14)	CpG	469.0	NM_001276301	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37490925-3	chr1	37490466	37491466	+	809.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 4 of 15)	L1MC4|LINE|L1	-2361.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65656971-3	chr17	65656479	65657479	+	809.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 6 of 6)	intron (NM_133685, intron 6 of 6)	-14775.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127595488-3	chr10	127594994	127595994	+	809.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	25654.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	122.5	303.5	241.5	118.0	315.5	210.5
Merged-chr15-40944114-3	chr15	40943613	40944613	+	809.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356998, intron 3 of 6)	intron (NM_001356998, intron 3 of 6)	-229588.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-59498825-1	chr16	59498325	59499325	+	809.666687	f0_balb.idr	intron (NM_174848, intron 16 of 18)	RLTR45|LTR|ERVK	27050.0	NM_025910	67014.0	Mm.289150	NM_025910	ENSMUSG00000022724	Riox2	1810047J07Rik|2410057H13Rik|3830408E23Rik|AI449204|Mina	ribosomal oxygenase 2	protein-coding	0.0	0.0	1.5	0.0	0.0	2.5
Merged-chr17-69203003-2	chr17	69202503	69203503	+	809.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	43647.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-31157245-2	chr8	31156735	31157735	+	809.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_103719, intron 5 of 7)	intron (NR_103719, intron 5 of 7)	6919.0	NR_103719	234138.0	Mm.349800	NM_144927	ENSMUSG00000031577	Tti2	-	TELO2 interacting protein 2	protein-coding	15.5	21.0	20.0	6.5	14.0	8.5
Merged-chr10-127544322-2	chr10	127543822	127544822	+	809.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 76 of 88)	intron (NM_008512, intron 76 of 88)	-9763.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-107514380-2	chr1	107513880	107514880	+	809.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011111, intron 1 of 7)	intron (NM_011111, intron 1 of 7)	2870.0	NM_011111	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98271816-2	chr12	98271316	98272316	+	809.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008152, intron 1 of 1)	Lx2B2|LINE|L1	3181.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127349194-2	chr3	127348606	127349606	+	809.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001327939, intron 1 of 45)	L2a|LINE|L2	59952.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	10.5	1.0	11.5	5.0	7.0	6.0
Merged-chr2-22740782-2	chr2	22740282	22741282	+	809.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33545.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126250611-3	chr4	126250081	126251081	+	809.650024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145970, intron 1 of 16)	intron (NM_001145970, intron 1 of 16)	5738.0	NM_144941	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	17.0	20.5	16.0	3.0	11.5	11.0
Merged-chr11-81996354-4	chr11	81995844	81996844	+	809.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27948.0	NM_001034013	11418.0	Mm.234998	NM_007384	ENSMUSG00000020704	Asic2	ACIC2|Accn1|BNC1|BNaC1|BNaC1a|Mdeg	acid-sensing (proton-gated) ion channel 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-82909493-4	chr10	82908985	82909985	+	809.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42859.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	0.0	3.0	3.5	0.0	6.5	6.5
Merged-chr12-33146149-4	chr12	33145690	33146690	+	809.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015602, intron 1 of 5)	intron (NR_015602, intron 1 of 5)	1396.0	NR_015602	320046.0	Mm.208337	NR_015602	ENSMUSG00000052125	F730043M19Rik	-	RIKEN cDNA F730043M19 gene	ncRNA	0.0	4.5	2.0	0.0	2.0	0.0
Merged-chr6-72868957-3	chr6	72868468	72869468	+	809.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019715, intron 1 of 6)	intron (NM_019715, intron 1 of 6)	30324.0	NM_001347231	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	2.5	15.0	19.0	2.5	15.0	17.5
Merged-chr13-62859413-4	chr13	62858929	62859929	+	809.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-1059.0	NM_007994	14120.0	Mm.391871	NM_007994	ENSMUSG00000021456	Fbp2	Fbp-1|Fbp1|Rae-30	fructose bisphosphatase 2	protein-coding	0.5	3.5	12.0	4.0	4.0	1.0
Merged-chr10-87859641-2	chr10	87859141	87860141	+	809.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111275, intron 1 of 3)	intron (NM_001111275, intron 1 of 3)	589.0	NM_010512	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28435835-4	chr7	28435359	28436359	+	809.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175021, intron 1 of 12)	CpG	332.0	NM_175021	233033.0	Mm.54120	NM_175021	ENSMUSG00000109336	Samd4b	BC042901	sterile alpha motif domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92933713-4	chr1	92933200	92934200	+	809.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011796)	promoter-TSS (NM_011796)	-708.0	NM_011796	23830.0	Mm.294315	NM_011796	ENSMUSG00000026270	Capn10	AW049679|Capn8|mKIAA1845	calpain 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-78958976-4	chr3	78958487	78959487	+	809.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	185900.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.0	1.5	0.0	0.0	5.0	1.5
Merged-chr10-98754470-3	chr10	98753970	98754970	+	809.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-160172.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57288431-2	chr17	57287931	57288931	+	809.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 1 of 25)	ZP3AR|Satellite|Satellite	9331.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44851096-4	chr7	44850581	44851581	+	809.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253920, intron 1 of 4)	intron (NM_001253920, intron 1 of 4)	1074.0	NM_001253920	67605.0	Mm.148007	NM_026270	ENSMUSG00000011096	Akt1s1	1110012J22Rik|AI227026|Lobe|Lobel|PRAS40	AKT1 substrate 1 (proline-rich)	protein-coding	14.0	15.0	10.5	22.5	18.0	17.5
Merged-chr8-70664864-2	chr8	70664367	70665367	+	809.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-5129.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	5.0	0.0	5.0	0.5	2.0	1.0
Merged-chr8-71288077-2	chr8	71287577	71288577	+	809.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 1 of 39)	B1F2|SINE|Alu	15363.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-24514790-2	chr9	24514290	24515290	+	809.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11650.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71474772-2	chr8	71474278	71475278	+	809.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_122114, exon 4 of 4)	non-coding (NR_122114, exon 4 of 4)	5584.0	NR_122114	66498.0	Mm.260360	NM_025600	ENSMUSG00000074247	Dda1	1500034J01Rik|1700095J19Rik|R74921	DET1 and DDB1 associated 1	protein-coding	1.5	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16687848-2	chr1	16687351	16688351	+	809.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016923)	promoter-TSS (NM_016923)	-605.0	NM_016923	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	134.5	367.5	289.0	145.5	342.0	282.0
Merged-chr5-66263537-2	chr5	66263037	66264037	+	809.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302833, intron 2 of 12)	B3|SINE|B2	2696.0	NM_027602	70918.0	Mm.23166	NM_027602	ENSMUSG00000029206	Nsun7	4921525L17Rik	NOL1/NOP2/Sun domain family, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59259323-2	chr10	59258823	59259823	+	809.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37401.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117850603-2	chr11	117850103	117851103	+	809.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001012273, intron 2 of 2)	RMER10B|LTR|ERVL	1366.0	NM_009689	11799.0	Mm.8552	NM_009689	ENSMUSG00000017716	Birc5	AAC-11|Api4|TIAP|survivin40	baculoviral IAP repeat-containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141361598-2	chr7	141361098	141362098	+	809.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133191, exon 19 of 21)	exon (NM_133191, exon 19 of 21)	3512.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191198860-2	chr1	191198360	191199360	+	809.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	-15527.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-79729392-4	chr7	79728901	79729901	+	809.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175640, intron 3 of 8)	intron (NM_175640, intron 3 of 8)	3375.0	NM_175640	103968.0	Mm.254917	NM_175640	ENSMUSG00000030546	Plin1	6030432J05Rik|Peri|Plin	perilipin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18342248-2	chr16	18341748	18342748	+	809.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359110, intron 1 of 9)	intron (NM_001359110, intron 1 of 9)	1662.0	NM_001359109	27883.0	Mm.265990	NM_138583	ENSMUSG00000013539	Tango2	D16H22S680E|T10	transport and golgi organization 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37342531-3	chr10	37342034	37343034	+	809.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-203608.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-82402078-2	chr8	82401573	82402573	+	809.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001254747, intron 1 of 7)	intron (NM_001254747, intron 1 of 7)	513.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	62.0	147.0	74.0	53.0	127.0	71.5
Merged-chr5-114618114-2	chr5	114617614	114618614	+	809.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40307.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-21943187-2	chr3	21942687	21943687	+	809.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-133465.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-75252475-2	chr1	75251975	75252975	+	809.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008985, exon 17 of 23)	exon (NM_008985, exon 17 of 23)	11296.0	NM_001359281	19275.0	Mm.2902	NM_008985	ENSMUSG00000026204	Ptprn	IA-2|mIA-A|mKIAA4064	protein tyrosine phosphatase, receptor type, N	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-43086221-2	chr15	43085721	43086721	+	809.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357956, intron 3 of 5)	intron (NM_001357956, intron 3 of 5)	84597.0	NM_001357957	239405.0	Mm.193274	NM_172815	ENSMUSG00000051920	Rspo2	2610028F08Rik|AA673245|D430027K22|ftls	R-spondin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167904158-2	chr2	167903658	167904658	+	809.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-28169.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120149531-2	chr10	120149031	120150031	+	809.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359184, intron 8 of 11)	intron (NM_001359184, intron 8 of 11)	-36566.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90486019-2	chr2	90485519	90486519	+	809.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-6845.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	27.0	18.5	9.0	11.5	19.0
Merged-chr7-28824121-2	chr7	28823621	28824621	+	809.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-1217.0	NM_016772	51798.0	Mm.291776	NM_016772	ENSMUSG00000053898	Ech1	AA617331	enoyl coenzyme A hydratase 1, peroxisomal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32184027-2	chr19	32183527	32184527	+	809.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	26986.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-32461219-2	chr6	32460719	32461719	+	809.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-49922.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-167235359-2	chr1	167234859	167235859	+	809.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030724, intron 3 of 6)	intron (NM_030724, intron 3 of 6)	49768.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27738775-2	chr2	27738275	27739275	+	809.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 2 of 9)	intron (NM_001290481, intron 2 of 9)	28192.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-142763807-2	chr2	142763307	142764307	+	809.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 12 of 26)	HAL1b|LINE|L1	137657.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21312385-2	chr5	21311885	21312885	+	809.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 9 of 18)	Lx9|LINE|L1	-60288.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70728449-2	chr11	70727949	70728949	+	809.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_153103, exon 23 of 23)	exon (NM_153103, exon 23 of 23)	22459.0	NR_105890	102465557.0		NR_105890	ENSMUSG00000105932	Mir6925	mmu-mir-6925	microRNA 6925	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88553197-2	chr17	88552697	88553697	+	809.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028658, intron 7 of 21)	intron (NM_028658, intron 7 of 21)	23073.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	0.5	2.0	4.0	19.0	9.0	1.0
Merged-chr8-3337173-3	chr8	3336665	3337665	+	809.488892	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-16250.0	NM_001033378	319493.0	Mm.234565	NM_001033378	ENSMUSG00000074497	A430078G23Rik	-	RIKEN cDNA A430078G23 gene	protein-coding	1.0	3.5	0.0	0.0	2.5	0.0
Merged-chr3-20033794-4	chr3	20033351	20034351	+	809.479187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 1 of 16)	intron (NM_080634, intron 1 of 16)	1459.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99498100-4	chr9	99497589	99498589	+	809.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028768, intron 16 of 21)	intron (NM_028768, intron 16 of 21)	27668.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91056623-4	chr1	91056142	91057142	+	809.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	3198.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52457442-3	chr2	52456936	52457936	+	809.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 9 of 13)	intron (NM_001037099, intron 9 of 13)	-32562.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50688326-3	chr16	50687828	50688828	+	809.422241	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38804.0	NR_105782	102466634.0		NR_105782	ENSMUSG00000098482	Mir6363	Gm28026|mmu-mir-6363	microRNA 6363	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-30026865-4	chr6	30026346	30027346	+	809.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F-int|LTR|ERVL-MaLR	-21142.0	NM_001164228	18181.0	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	10.0	19.5	7.5	6.0	41.0	27.0
Merged-chr10-75059522-3	chr10	75059018	75060018	+	809.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1378.0	NM_001081412	110279.0	Mm.333722	NM_001081412	ENSMUSG00000009681	Bcr	5133400C09Rik|AI561783|AI853148|mKIAA3017	breakpoint cluster region	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42004601-3	chr19	42004084	42005084	+	809.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	MTC|LTR|ERVL-MaLR	22821.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	17.0	47.0	35.0	16.5	62.0	43.5
Merged-chr13-33079667-4	chr13	33079168	33080168	+	809.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4435.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	5.5	2.5	8.0	4.5	4.5	9.0
Merged-chr15-68377934-4	chr15	68377433	68378433	+	809.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36644.0	NR_029718	387228.0		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	3.0	4.5	7.5	0.0	3.0	9.0
Merged-chr4-87759292-4	chr4	87758781	87759781	+	809.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47042.0	NM_001286158	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-33739434-4	chr1	33738921	33739921	+	809.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008999, exon 8 of 8)	3' UTR (NM_008999, exon 8 of 8)	18329.0	NM_145392	213539.0	Mm.247037	NM_145392	ENSMUSG00000042215	Bag2	2610042A13Rik|BC016230	BCL2-associated athanogene 2	protein-coding	0.0	0.0	3.0	0.0	0.0	0.5
Merged-chr8-104170607-4	chr8	104170005	104171005	+	809.354187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001141922)	promoter-TSS (NM_001141922)	-8.0	NM_001141924	65115.0	Mm.41849	NM_001141922	ENSMUSG00000031872	Bean1	Bean	brain expressed, associated with Nedd4, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10955235-2	chr16	10954735	10955735	+	809.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37886.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-33138073-2	chr12	33137573	33138573	+	809.333313	f1_balb.idr|f1_c57bl6.idr	intron (NR_015602, intron 3 of 5)	ORR1B1|LTR|ERVL-MaLR	9513.0	NR_015602	320046.0	Mm.208337	NR_015602	ENSMUSG00000052125	F730043M19Rik	-	RIKEN cDNA F730043M19 gene	ncRNA	0.5	0.0	2.0	0.5	0.0	2.0
Merged-chr2-119296931-3	chr2	119296409	119297409	+	809.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172269, exon 5 of 5)	exon (NM_172269, exon 5 of 5)	8167.0	NM_172269	228545.0	Mm.294761	NM_172269	ENSMUSG00000034216	Vps18	9930024E13Rik	VPS18 CORVET/HOPS core subunit	protein-coding	2.0	2.0	1.5	2.0	3.5	0.5
Merged-chr12-91758298-3	chr12	91757830	91758830	+	809.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	28106.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-65569993-3	chr6	65569523	65570523	+	809.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20375.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-109083324-3	chr7	109082825	109083825	+	809.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001038624)	promoter-TSS (NM_001038624)	-1.0	NM_178780	320360.0	Mm.71007	NM_178780	ENSMUSG00000048330	Ric3	E130307J04Rik	RIC3 acetylcholine receptor chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61124875-5	chr18	61124406	61125406	+	809.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001037859, exon 14 of 22)	exon (NM_001037859, exon 14 of 22)	7438.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	8.0	27.0	16.5	4.0	14.5	4.5
Merged-chr12-110844649-4	chr12	110844170	110845170	+	809.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_152102)	TTS (NR_152102)	3641.0	NR_152102	66709.0	Mm.390504	NR_152102		4921507G05Rik	-	RIKEN cDNA 4921507G05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152528391-4	chr1	152527895	152528895	+	809.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001346119, exon 15 of 18)	exon (NM_001346119, exon 15 of 18)	96822.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-83533744-7	chr10	83533301	83534301	+	809.287048	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153543, intron 1 of 22)	intron (NM_153543, intron 1 of 22)	339.0	NM_153543	216188.0	Mm.263138	NM_153543	ENSMUSG00000020256	Aldh1l2	D330038I09Rik|mtFDH	aldehyde dehydrogenase 1 family, member L2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123021933-3	chr8	123021419	123022419	+	809.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	20365.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-179960030-3	chr1	179959456	179960456	+	809.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346805)	promoter-TSS (NM_001346805)	-804.0	NM_001359541	226751.0	Mm.259655	NM_001033285	ENSMUSG00000026490	Cdc42bpa	A930014J19Rik|DMPK-like	CDC42 binding protein kinase alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-74962298-4	chr18	74961717	74962717	+	809.270813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010720)	promoter-TSS (NM_010720)	-954.0	NM_010720	16891.0	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr6-32587204-2	chr6	32586708	32587708	+	809.266663	f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 1 of 31)	RLTR20A4|LTR|ERVK	984.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	6.0	1.0	0.0	0.0	1.5	2.0
Merged-chr18-35740047-4	chr18	35739476	35740476	+	809.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001289592, exon 2 of 8)	5' UTR (NM_001289592, exon 2 of 8)	578.0	NM_028261	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90219300-2	chr16	90218800	90219800	+	809.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-1442.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6358956-2	chr4	6358456	6359456	+	809.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6724.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0.0	0.0	0.0	1.0	6.0	0.0
Merged-chr17-29440091-2	chr17	29439591	29440591	+	809.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50954.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.0	0.0	7.0	0.0	3.0	0.0
Merged-chr2-127333863-2	chr2	127333363	127334363	+	809.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2296.0	NM_010090	13537.0	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-25006877-4	chr19	25006388	25007388	+	809.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 1 of 47)	intron (NM_028785, intron 1 of 47)	7359.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	19.0	30.5	37.5	1.0	22.0	28.5
Merged-chr16-3233744-3	chr16	3233298	3234298	+	809.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CTGTG)n|Simple_repeat|Simple_repeat	-358600.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120127123-2	chr8	120126623	120127623	+	809.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172286, intron 1 of 12)	intron (NM_172286, intron 1 of 12)	12971.0	NM_001163761	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59076476-4	chr15	59075969	59076969	+	809.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 1 of 14)	intron (NM_144800, intron 1 of 14)	5557.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-124234622-4	chr4	124234126	124235126	+	809.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	251333.0	NR_040774	78460.0	Mm.452060	NR_040774		1700057H15Rik	-	RIKEN cDNA 1700057H15 gene	ncRNA	3.5	5.5	5.5	15.5	8.0	0.5
Merged-chr1-88211914-3	chr1	88211436	88212436	+	809.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201645)	promoter-TSS (NM_201645)	-23.0	NM_201645	394436.0	Mm.300095	NM_201645	ENSMUSG00000089960	Ugt1a1	Gnt1|UDPGT 1-1|UGT1A01|Udpgt-1a|UgtBr1	UDP glucuronosyltransferase 1 family, polypeptide A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91677563-4	chr6	91677066	91678066	+	809.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6501.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.0	3.5	1.0	5.0	0.0	0.0
Merged-chr3-28053292-4	chr3	28052802	28053802	+	809.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 11 of 25)	L1MD2|LINE|L1	69131.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88514638-4	chr4	88514143	88515143	+	809.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8151.0	NM_010510	15977.0	Mm.1245	NM_010510	ENSMUSG00000048806	Ifnb1	IFN-beta|IFNB|Ifb	interferon beta 1, fibroblast	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57749312-3	chr6	57748874	57749874	+	809.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2-int|LTR|ERVL-MaLR	46919.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30598795-3	chr16	30598312	30599312	+	809.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177632)	promoter-TSS (NM_177632)	-911.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40224623-2	chr12	40224123	40225123	+	809.166687	f1_balb.idr|f1_c57bl6.idr	intron (NR_045157, intron 1 of 2)	intron (NR_045157, intron 1 of 2)	1259.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21269655-2	chr19	21269155	21270155	+	809.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-2623.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr18-61129439-2	chr18	61128939	61129939	+	809.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 19 of 21)	intron (NM_001037859, intron 19 of 21)	11971.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.0	1.5	2.0	0.5	0.5	1.5
Merged-chr7-81195714-4	chr7	81195243	81196243	+	809.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR1a|LTR|Gypsy	-18061.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-16847453-4	chr12	16846948	16847948	+	809.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	36483.0	NM_033270	50496.0	Mm.23296	NM_033270	ENSMUSG00000057469	E2f6	AI462434|E2F6a|E2F6b|EMA	E2F transcription factor 6	protein-coding	3.5	10.0	14.5	1.0	1.5	6.0
Merged-chr17-71254892-4	chr17	71254413	71255413	+	809.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 7 of 7)	intron (NM_001357337, intron 7 of 7)	50259.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	12.5	3.0	2.5	2.0	5.5	4.5
Merged-chr5-92245691-3	chr5	92245185	92246185	+	809.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011148, intron 7 of 16)	intron (NM_011148, intron 7 of 16)	10593.0	NM_011148	19023.0	Mm.87155	NM_011148	ENSMUSG00000029410	Ppef2	-	protein phosphatase, EF hand calcium-binding domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87581052-3	chr1	87580555	87581555	+	809.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160163, intron 2 of 3)	intron (NM_001160163, intron 2 of 3)	-2967.0	NM_001160165	23956.0	Mm.143717	NM_015750	ENSMUSG00000079434	Neu2	MBS|MSS|MTS	neuraminidase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104518616-3	chr3	104518116	104519116	+	809.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6698.0	NM_001310698	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75095017-6	chr8	75094641	75095641	+	809.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010442, intron 1 of 4)	intron (NM_010442, intron 1 of 4)	1523.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	11.5	23.0	16.5	10.0	19.5	18.0
Merged-chr4-59199552-4	chr4	59199066	59200066	+	809.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011673, intron 1 of 8)	intron (NM_011673, intron 1 of 8)	10016.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11060119-4	chr19	11059605	11060605	+	809.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9539.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171397700-3	chr1	171397217	171398217	+	809.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005508, intron 2 of 11)	intron (NM_001005508, intron 2 of 11)	8757.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	6.0	11.0	7.0	2.5	14.0	5.5
Merged-chr19-46390538-1	chr19	46390038	46391038	+	809.0	f1_c57bl6.idr	intron (NM_016860, intron 1 of 10)	B1_Mm|SINE|Alu	5197.0	NM_016860	54130.0	Mm.3118	NM_016860	ENSMUSG00000025228	Actr1a	Arp1|alpha-Arp1	ARP1 actin-related protein 1A, centractin alpha	protein-coding	1.0	0.0	1.0	7.0	5.0	5.0
Merged-chr17-62542907-2	chr17	62542407	62543407	+	809.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	338410.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-103835911-2	chr5	103835411	103836411	+	809.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133919, intron 11 of 19)	intron (NM_133919, intron 11 of 19)	75348.0	NM_001359987	246293.0	Mm.179871	NM_178741	ENSMUSG00000029312	Klhl8	2310001P09Rik|D5Ertd431e	kelch-like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156661391-2	chr1	156660900	156661900	+	809.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023141, intron 4 of 5)	intron (NM_023141, intron 4 of 5)	12939.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	34.5	37.5	20.5	14.5	21.0	9.5
Merged-chr11-80156318-4	chr11	80155800	80156800	+	809.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 2 of 10)	intron (NM_172133, intron 2 of 10)	2138.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125183607-3	chr8	125183074	125184074	+	809.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 9 of 12)	intron (NM_174854, intron 9 of 12)	129379.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	4.0	17.0	4.5	8.5	13.0	3.5
Merged-chr7-102396525-2	chr7	102396025	102397025	+	809.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009287, intron 3 of 11)	RSINE1|SINE|B4	-45170.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17550238-2	chr17	17549738	17550738	+	809.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 11 of 17)	L2c|LINE|L2	74251.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	11.5	6.5	3.0	7.5	5.0	4.0
Merged-chr16-43363897-1	chr16	43363397	43364397	+	809.0	f0_c57.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	56299.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126076069-1	chr7	126075569	126076569	+	809.0	f1_c57bl6.idr	intron (NM_001358885, intron 1 of 5)	intron (NM_001358885, intron 1 of 5)	6342.0	NM_001101488	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	0.0	0.0	0.0	3.0	0.0	0.0
Merged-chr16-65577432-2	chr16	65576934	65577934	+	809.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14737.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	1.5	3.0	8.5	0.0	0.0	2.0
Merged-chr15-102408957-2	chr15	102408457	102409457	+	809.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013672, exon 3 of 6)	exon (NM_013672, exon 3 of 6)	2641.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-43744324-2	chr9	43743824	43744824	+	809.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021424)	promoter-TSS (NM_021424)	-252.0	NM_021424	58235.0	Mm.335096	NM_021424	ENSMUSG00000032012	Nectin1	AI835281|AW549174|Cd111|HIgR|HveC|PRR|PRR1|Pvrl1|nectin-1	nectin cell adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46512268-2	chr19	46511768	46512768	+	809.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	B3A|SINE|B2	10620.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-27140229-2	chr16	27139729	27140729	+	809.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-148577.0	NM_001285918	239789.0	Mm.326909	NM_001013761	ENSMUSG00000068428	Gmnc	Gemc1|Gm1778|Gm606	geminin coiled-coil domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-59218166-2	chr12	59217666	59218666	+	809.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033156, intron 1 of 3)	intron (NM_001033156, intron 1 of 3)	1317.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134533077-1	chr6	134532577	134533577	+	809.0	f1_c57bl6.idr	intron (NM_008514, intron 2 of 22)	intron (NM_008514, intron 2 of 22)	33836.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	74.0	72.5	72.0	52.0	94.5	77.0
Merged-chr11-49981930-2	chr11	49981430	49982430	+	809.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43401.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24667795-2	chr10	24667295	24668295	+	809.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308329, intron 9 of 24)	L1_Mus3|LINE|L1	44364.0	NM_001308327	18605.0	Mm.27254	NM_008813	ENSMUSG00000037370	Enpp1	4833416E15Rik|AI428932|C76301|CD203c|E-NPP 1|E-NPP1|Ly-41|M6S1|NPP1|Npps|PC-1|Pca|Pca-1|Pdnp1|ttw|twy	ectonucleotide pyrophosphatase/phosphodiesterase 1	protein-coding	6.5	0.0	0.0	6.5	0.0	0.0
Merged-chr6-115970383-2	chr6	115969883	115970883	+	809.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026376, intron 9 of 35)	intron (NM_026376, intron 9 of 35)	24622.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5616297-2	chr17	5615797	5616797	+	809.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	123697.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20964460-2	chr18	20963960	20964960	+	809.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026301, intron 1 of 5)	ID_B1|SINE|B4	19835.0	NM_026301	67664.0	Mm.45980	NM_026301	ENSMUSG00000033107	Rnf125	4930553F04Rik	ring finger protein 125	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96409553-2	chr9	96409055	96410055	+	809.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30D2_MM|LTR|ERV1	-45124.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	2.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62815502-2	chr9	62815002	62816002	+	809.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3854.0	NM_010193	14155.0	Mm.24069	NM_010193	ENSMUSG00000032244	Fem1b	mKIAA0396	feminization 1 homolog b (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61751357-2	chr10	61750857	61751857	+	809.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207000, intron 4 of 8)	B1_Mus2|SINE|Alu	-23380.0	NR_039568	100628583.0		NR_039568	ENSMUSG00000093017	Mir5108	mmu-mir-5108|mu-mir-5108	microRNA 5108	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-34110108-2	chr16	34109608	34110608	+	809.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 34 of 59)	intron (NM_177357, intron 34 of 59)	-143070.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70220626-1	chr8	70220126	70221126	+	809.0	f1_balb.idr	3' UTR (NM_133972, exon 8 of 8)	3' UTR (NM_133972, exon 8 of 8)	-8345.0	NM_001007570	73095.0	Mm.185413	NM_001007570	ENSMUSG00000002346	Slc25a42	2900084M01Rik	solute carrier family 25, member 42	protein-coding	4.5	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127563566-2	chr10	127563066	127564066	+	809.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 42 of 88)	intron (NM_008512, intron 42 of 88)	-29007.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	2.5	9.0	3.0	3.5	1.0	1.0
Merged-chr15-67636444-1	chr15	67635944	67636944	+	809.0	f0_balb.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	409675.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	2.0	4.5	5.0	2.5	6.5	2.5
Merged-chr11-51816024-4	chr11	51815509	51816509	+	809.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_199299, exon 12 of 12)	3' UTR (NM_199299, exon 12 of 12)	41472.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20724513-4	chr10	20724006	20725006	+	809.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 1 of 12)	intron (NM_013875, intron 1 of 12)	572.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59851860-2	chr2	59851360	59852360	+	809.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028118)	TTS (NM_028118)	30746.0	NM_001159636	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25841449-2	chr8	25840949	25841949	+	809.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011791)	promoter-TSS (NM_011791)	-662.0	NM_011791	23808.0	Mm.27706	NM_011791	ENSMUSG00000031575	Ash2l	-	ASH2 like histone lysine methyltransferase complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-82327908-2	chr17	82327408	82328408	+	809.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-589521.0	NM_011406	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34132211-2	chr7	34131711	34132711	+	809.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207212, intron 1 of 7)	PB1D7|SINE|Alu	1057.0	NM_207212	101543.0	Mm.422738	NM_207212	ENSMUSG00000036459	Wtip	-	WT1-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-18075-1	chr4	17575	18575	+	809.0	f1_c57bl6.idr	Intergenic	Intergenic	-3154008.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97228843-4	chr3	97228338	97229338	+	809.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1474.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94605772-2	chr16	94605272	94606272	+	809.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-5647.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77916579-2	chr9	77916079	77917079	+	809.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134255)	promoter-TSS (NM_134255)	-786.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81198078-2	chr7	81197578	81198578	+	809.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15726.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-39160011-2	chr3	39159511	39160511	+	809.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	273071.0	NM_183221	329628.0	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108737927-2	chr6	108737427	108738427	+	809.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-45132.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	1.5	0.0	0.0	0.5	0.0	0.0
Merged-chr11-6527387-2	chr11	6526887	6527887	+	809.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045893, intron 2 of 3)	intron (NR_045893, intron 2 of 3)	1373.0	NR_045893	100041286.0	Mm.459507	NR_045893	ENSMUSG00000085156	Snhg15	Gm11974	small nucleolar RNA host gene 15	ncRNA	7.5	31.5	15.5	8.5	32.0	13.0
Merged-chr1-191096510-1	chr1	191096010	191097010	+	809.0	f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-1904.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	24.5	37.0	19.5	31.5	63.0	27.5
Merged-chr17-81380076-3	chr17	81379585	81380585	+	809.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_104580, exon 9 of 9)	non-coding (NR_104580, exon 9 of 9)	-315000.0	NM_028138	72167.0	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147587317-2	chr4	147586817	147587817	+	809.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34040.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105341497-2	chr8	105340997	105341997	+	809.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	6473.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122811883-4	chr5	122811387	122812387	+	808.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042491, intron 5 of 16)	B3|SINE|B2	9455.0	NM_021505	59008.0	Mm.332667	NM_021505	ENSMUSG00000029472	Anapc5	2510006G12Rik|AA408751|AA536819|AA986414|APC5|Anpc5	anaphase-promoting complex subunit 5	protein-coding	0.0	1.5	9.5	12.0	3.5	5.0
Merged-chr5-111049863-3	chr5	111049379	111050379	+	808.9523929999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	45735.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	0.5	4.0	8.5	3.0	0.5	6.5
Merged-chr6-71166960-4	chr6	71166454	71167454	+	808.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22574.0	NM_178413	232078.0	Mm.37547	NM_178413	ENSMUSG00000054474	Thnsl2	BC051244|TSH2	threonine synthase-like 2 (bacterial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-24045859-4	chr18	24045360	24046360	+	808.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-25047.0	NM_021559	59057.0	Mm.417427	NM_021559	ENSMUSG00000051469	Zfp24	3526401F17Rik|5033419P20Rik|AI480505|AI642085|AL024422|KOX17|ZF-12|Zfp191|Znf24	zinc finger protein 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-139099488-4	chr3	139099007	139100007	+	808.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-24306.0	NM_001356388	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	1.0	4.0	0.5	0.0	3.5	0.5
Merged-chr11-22952857-4	chr11	22952370	22953370	+	808.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361661, intron 2 of 2)	intron (NM_001361661, intron 2 of 2)	-19135.0	NM_011663	22183.0	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89140373-3	chr15	89139862	89140862	+	808.904724	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013871, exon 1 of 12)	exon (NM_013871, exon 1 of 12)	341.0	NM_013871	29857.0	Mm.38343	NM_013871	ENSMUSG00000022610	Mapk12	AW123708|Erk6|P38gamma|Prkm12|Sapk3	mitogen-activated protein kinase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57250548-2	chr17	57250048	57251048	+	808.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001242390, intron 1 of 14)	intron (NM_001242390, intron 1 of 14)	1097.0	NM_001242389	106628.0	Mm.37368	NM_134125	ENSMUSG00000019487	Trip10	AI646975|Cip4	thyroid hormone receptor interactor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65949675-4	chr3	65949151	65950151	+	808.891663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019937, intron 5 of 10)	intron (NM_019937, intron 5 of 10)	8598.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	12.5	47.5	19.5	5.5	24.5	42.5
Merged-chr10-41839114-3	chr10	41838614	41839614	+	808.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162908, intron 1 of 9)	intron (NM_001162908, intron 1 of 9)	28540.0	NM_001162908	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173770852-2	chr2	173770367	173771367	+	808.875	f0_balb.idr|f0_c57.idr	intron (NM_019806, intron 2 of 5)	intron (NM_019806, intron 2 of 5)	33296.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34915532-4	chr17	34915022	34916022	+	808.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023557, intron 1 of 20)	intron (NM_023557, intron 1 of 20)	1056.0	NM_023557	70129.0	Mm.183126	NM_023557	ENSMUSG00000007034	Slc44a4	2210409B01Rik|NG22|mTPPT1	solute carrier family 44, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72711097-2	chr5	72710597	72711597	+	808.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289494, intron 8 of 13)	intron (NM_001289494, intron 8 of 13)	25505.0	NM_013698	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141064259-2	chr7	141063759	141064759	+	808.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177897, intron 2 of 19)	intron (NM_177897, intron 2 of 19)	2985.0	NM_177897	330671.0	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167250900-3	chr2	167250419	167251419	+	808.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10382.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56473662-4	chr17	56473163	56474163	+	808.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252455, intron 1 of 27)	intron (NM_001252455, intron 1 of 27)	2817.0	NM_001252455	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157399823-3	chr2	157399327	157400327	+	808.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24466.0	NM_009271	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	4.5	9.5	16.0	3.0	12.5	6.5
Merged-chr18-38543227-2	chr18	38542727	38543727	+	808.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58041.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72023829-3	chr6	72023345	72024345	+	808.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046180, intron 1 of 2)	intron (NR_046180, intron 1 of 2)	18683.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-66973614-3	chr3	66973142	66974142	+	808.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001302359, exon 5 of 5)	3' UTR (NM_001302359, exon 5 of 5)	5169.0	NM_001302358	20429.0	Mm.39093	NM_013665	ENSMUSG00000027833	Shox2	6330543G17Rik|OG12|Og12x|Prx3|SHOT	short stature homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72867602-5	chr5	72867091	72868091	+	808.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 1 of 17)	intron (NM_013689, intron 1 of 17)	857.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36240091-4	chr18	36239588	36240588	+	808.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-41074.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136878834-4	chr4	136878318	136879318	+	808.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	7359.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	27.5	34.0	17.0	8.5	18.5	9.5
Merged-chr7-16099771-7	chr7	16099334	16100334	+	808.785706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025898, intron 1 of 10)	intron (NM_025898, intron 1 of 10)	1254.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	4.0	15.0	7.0	2.0	10.0	10.5
Merged-chr19-9134977-3	chr19	9134465	9135465	+	808.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025610, exon 2 of 7)	exon (NM_025610, exon 2 of 7)	601.0	NM_025610	66514.0	Mm.272847	NM_025610	ENSMUSG00000024654	Asrgl1	2410004D18Rik|ALP|ALP1|AU040643|AW060375	asparaginase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-66944574-3	chr6	66944057	66945057	+	808.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177560, intron 3 of 4)	intron (NM_001177560, intron 3 of 4)	47666.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84355457-3	chr2	84354952	84355952	+	808.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018782, intron 9 of 15)	MTB_Mm|LTR|ERVL-MaLR	69814.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0.0	5.5	1.0	0.0	0.0	1.5
Merged-chr14-75172471-2	chr14	75171971	75172971	+	808.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	36046.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-7919155-2	chr17	7918655	7919655	+	808.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-6845.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120582817-3	chr11	120582303	120583303	+	808.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1183.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95713786-4	chr8	95713283	95714283	+	808.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001195006, exon 15 of 15)	3' UTR (NM_001195006, exon 15 of 15)	-2130.0	NM_001035123	66083.0	Mm.261321	NM_001035123	ENSMUSG00000031671	Setd6	0610039J04Rik|3110004G14Rik|AI413388|C76402	SET domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156424328-2	chr1	156423802	156424802	+	808.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-3387.0	NM_001346967	77352.0	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	3.5	5.5	3.5	7.5	8.0	4.5
Merged-chr13-95503599-3	chr13	95503084	95504084	+	808.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	21656.0	NM_007974	14063.0	Mm.1614	NM_007974	ENSMUSG00000021678	F2rl1	Gpcr11|PAR-2|Par2	coagulation factor II (thrombin) receptor-like 1	protein-coding	17.0	15.5	23.0	4.0	0.0	0.0
Merged-chr14-65902970-3	chr14	65902469	65903469	+	808.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50775.0	NM_172604	219151.0	Mm.344095	NM_172604	ENSMUSG00000034463	Scara3	APC7|C130058N24Rik|CSR|CSR1|MSLR1|MSRL1	scavenger receptor class A, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145289489-3	chr7	145288950	145289950	+	808.711121	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5439.0	NR_132642	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	0.5	3.5	3.5	0.0	5.0	3.0
Merged-chr4-156077435-5	chr4	156076960	156077960	+	808.679993	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17658.0	NR_132444	100415901.0	Mm.437006	NR_132444	ENSMUSG00000086549	Gm13648	-	predicted gene 13648	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-19722170-3	chr14	19721669	19722669	+	808.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29088.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80136998-3	chr10	80136506	80137506	+	808.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036582, intron 3 of 10)	intron (NR_036582, intron 3 of 10)	381.0	NM_001195268	100503659.0	Mm.485395	NM_015761	ENSMUSG00000035640	Cbarp	9630008F14|Dos|R29144/1	calcium channel, voltage-dependent, beta subunit associated regulatory protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98742678-3	chr11	98742118	98743118	+	808.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178060, intron 1 of 8)	intron (NM_178060, intron 1 of 8)	833.0	NM_001313983	21833.0	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153291899-3	chr2	153291424	153292424	+	808.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008444, intron 1 of 8)	intron (NM_008444, intron 1 of 8)	508.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-35034850-3	chr4	35034355	35035355	+	808.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 2 of 3)	intron (NM_178061, intron 2 of 3)	-117200.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89638166-3	chr6	89637650	89638650	+	808.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5838.0	NM_001178060	232223.0	Mm.229332	NM_153162	ENSMUSG00000000811	Txnrd3	AI196535|TGR|TR2	thioredoxin reductase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115367742-3	chr11	115367246	115368246	+	808.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346774)	promoter-TSS (NM_001346774)	10.0	NM_001346774	217310.0	Mm.205707	NM_175454	ENSMUSG00000034586	Hid1	C630004H02Rik	HID1 domain containing	protein-coding	0.0	3.0	0.0	0.0	6.5	0.0
Merged-chr11-115157613-2	chr11	115157113	115158113	+	808.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_021411, intron 2 of 8)	intron (NM_021411, intron 2 of 8)	3435.0	NM_021411	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	1.0	0.5
Merged-chr4-146493471-2	chr4	146492971	146493971	+	808.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8529.0	NM_001243138	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56553164-4	chr17	56552671	56553671	+	808.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130128, intron 2 of 3)	intron (NR_130128, intron 2 of 3)	1216.0	NR_130128	100504425.0	Mm.384143	NR_130128	ENSMUSG00000110218	Gm20219	Tincr	predicted gene, 20219	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24729859-2	chr5	24729359	24730359	+	808.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081441, intron 1 of 5)	intron (NM_001081441, intron 1 of 5)	821.0	NM_001081441	269633.0	Mm.392539	NM_026621	ENSMUSG00000055235	Wdr86	2810046M22Rik|BC059069	WD repeat domain 86	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129036253-10	chr4	129035765	129036765	+	808.616638	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	-22006.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96152081-3	chr3	96151577	96152577	+	808.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025613, intron 10 of 12)	intron (NM_001025613, intron 10 of 12)	-9893.0	NM_181409	194126.0	Mm.268536	NM_181409	ENSMUSG00000045934	Mtmr11	AI035306|BC051083|Cra	myotubularin related protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101678596-5	chr13	101678016	101679016	+	808.608337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14114.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	4.5	5.5	0.5	2.0	18.5	2.5
Merged-chr3-136347518-4	chr3	136347011	136348011	+	808.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-21445.0	NM_001033350	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	1.5	1.0	3.0	1.5	1.0	3.0
Merged-chr13-102698861-2	chr13	102698361	102699361	+	808.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360519, intron 1 of 2)	intron (NM_001360519, intron 1 of 2)	5303.0	NM_008533	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87252382-2	chr17	87251894	87252894	+	808.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	13553.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	0.0	0.0	1.0	0.0	1.0	0.0
Merged-chr11-119372754-2	chr11	119372204	119373204	+	808.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178743, intron 9 of 16)	B1_Mus2|SINE|Alu	17147.0	NM_178743	268512.0	Mm.31869	NM_178743	ENSMUSG00000039908	Slc26a11	F630021I08Rik	solute carrier family 26, member 11	protein-coding	1.5	2.5	1.5	1.5	4.5	2.0
Merged-chr7-143501919-2	chr7	143501419	143502419	+	808.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009434, intron 1 of 1)	CpG	605.0	NM_009434	22113.0	Mm.334344	NM_009434	ENSMUSG00000010760	Phlda2	Ipl|Tssc3	pleckstrin homology like domain, family A, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4740212-3	chr16	4739688	4740688	+	808.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136066, intron 1 of 5)	B3A|SINE|B2	-1425.0	NM_010443	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-123798022-3	chr3	123797514	123798514	+	808.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107162.0	NR_121616	83398.0	Mm.443908	NM_031186	ENSMUSG00000027977	Ndst3	4921531K01Rik|4930511P15Rik|N-HSST 3|NDST-3	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3	protein-coding	6.0	7.0	4.0	6.5	7.5	2.5
Merged-chr7-120865201-3	chr7	120864732	120865732	+	808.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267710, intron 2 of 17)	intron (NM_001267710, intron 2 of 17)	14043.0	NM_001267711	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-50439023-4	chr3	50438511	50439511	+	808.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011990, intron 1 of 11)	intron (NM_011990, intron 1 of 11)	4602.0	NM_011990	26570.0	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	2.0	7.0	1.0	0.0	1.0	1.5
Merged-chr10-52420899-2	chr10	52420399	52421399	+	808.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030250, intron 1 of 4)	intron (NM_030250, intron 1 of 4)	3352.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117134051-3	chr8	117133570	117134570	+	808.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163028)	TTS (NM_001163028)	-24065.0	NM_001081151	209239.0	Mm.132992	NM_001081151	ENSMUSG00000052557	Gan	A330045G18|gigaxonin	giant axonal neuropathy	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76329183-4	chr12	76328642	76329642	+	808.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001101471, exon 2 of 2)	exon (NM_001101471, exon 2 of 2)	4251.0	NM_001101471	238276.0	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121215658-3	chr9	121215163	121216163	+	808.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177589, intron 17 of 36)	intron (NM_177589, intron 17 of 36)	61509.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	0.5	0.0	3.5	0.0	5.0	1.0
Merged-chr14-102070139-2	chr14	102069639	102070639	+	808.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	229516.0	NM_001347628	380928.0	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25757341-2	chr7	25756841	25757841	+	808.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001190974, exon 19 of 19)	3' UTR (NM_001190974, exon 19 of 19)	-2582.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115234635-2	chr11	115234121	115235121	+	808.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033393, intron 9 of 9)	intron (NM_001033393, intron 9 of 9)	32622.0	NM_010350	14813.0	Mm.39090	NM_010350	ENSMUSG00000020734	Grin2c	GluN2C|NMDAR2C|NR2C	glutamate receptor, ionotropic, NMDA2C (epsilon 3)	protein-coding	0.5	0.0	0.5	0.0	0.0	1.0
Merged-chr17-35830257-2	chr17	35829757	35830757	+	808.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008027, intron 10 of 12)	B1_Mur1|SINE|Alu	6900.0	NM_008027	14251.0	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr19-5963494-2	chr19	5962994	5963994	+	808.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 1 of 17)	intron (NM_001164057, intron 1 of 17)	712.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	1.5	16.0	10.0	1.5	16.5	13.0
Merged-chr11-118151736-2	chr11	118151236	118152236	+	808.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22517.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27688500-2	chr7	27688000	27689000	+	808.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001112731)	promoter-TSS (NM_001112731)	-840.0	NM_001112731	112415.0	Mm.145362	NM_198417	ENSMUSG00000057093	Zfp607b	C030039L03Rik	zinc finger protein 607B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23869837-2	chr18	23869337	23870337	+	808.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	65867.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97310363-2	chr7	97309863	97310863	+	808.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001177412, exon 10 of 10)	exon (NM_001177412, exon 10 of 10)	15601.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr13-119808161-2	chr13	119807661	119808661	+	808.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-17039.0	NM_001302550	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-94722022-2	chr1	94721522	94722522	+	808.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75420.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-85028596-2	chr10	85028096	85029096	+	808.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73899.0	NM_010214	14202.0	Mm.46163	NM_010214	ENSMUSG00000050035	Fhl4	-	four and a half LIM domains 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125471222-2	chr6	125470722	125471722	+	808.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007657, intron 2 of 7)	intron (NM_007657, intron 2 of 7)	23538.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14271348-2	chr2	14270848	14271848	+	808.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008625, exon 9 of 30)	exon (NM_008625, exon 9 of 30)	10345.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44978010-2	chr13	44977510	44978510	+	808.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025772, intron 5 of 9)	intron (NM_025772, intron 5 of 9)	24086.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71434192-2	chr6	71433692	71434692	+	808.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355745, intron 1 of 9)	intron (NM_001355745, intron 1 of 9)	6445.0	NM_001355745	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45895978-2	chr7	45895478	45896478	+	808.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021482, intron 1 of 4)	intron (NM_021482, intron 1 of 4)	733.0	NM_001291064	58867.0	Mm.214217	NM_021482	ENSMUSG00000040231	Syngr4	1700016O14Rik	synaptogyrin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-88434971-2	chr12	88434471	88435471	+	808.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361598, intron 4 of 9)	intron (NM_001361598, intron 4 of 9)	-57648.0	NR_045888	71818.0	Mm.490789	NR_045888	ENSMUSG00000113434	3200001D21Rik	-	RIKEN cDNA 3200001D21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-36868192-2	chr8	36867697	36868697	+	808.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 2 of 17)	intron (NM_001194940, intron 2 of 17)	84245.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	17.5	31.5	37.5	8.5	32.0	13.5
Merged-chr14-32083793-2	chr14	32083293	32084293	+	808.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001047433, intron 1 of 1)	B3|SINE|B2	1493.0	NR_104305	105638.0	Mm.2519	NM_172254	ENSMUSG00000021905	Dph3	DELGIP1|DelgipP1|Desr1|KTI11|Zcsl2	diphthamine biosynthesis 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83457963-2	chr6	83457463	83458463	+	808.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1571.0	NM_001347313	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37481892-2	chr19	37481392	37482392	+	808.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	16638.0	NR_131009	78640.0	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133631612-4	chr4	133631098	133632098	+	808.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017968, intron 1 of 7)	intron (NM_001017968, intron 1 of 7)	1831.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	26.5	42.5	44.0	20.5	19.5	28.0
Merged-chr15-68367231-2	chr15	68366731	68367731	+	808.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-25942.0	NR_029718	387228.0		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33580722-2	chr16	33580222	33581222	+	808.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 4 of 11)	intron (NM_001083902, intron 4 of 11)	62127.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-69218711-4	chr17	69218294	69219294	+	808.471436	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	58412.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10844673-4	chr19	10844148	10845148	+	808.446411	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023044, intron 1 of 7)	intron (NM_023044, intron 1 of 7)	2104.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-97249167-3	chr13	97248662	97249662	+	808.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007930, intron 2 of 2)	intron (NM_007930, intron 2 of 2)	8057.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22002079-3	chr11	22001563	22002563	+	808.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011023)	promoter-TSS (NM_011023)	-412.0	NM_011023	18423.0	Mm.129663	NM_011023	ENSMUSG00000005917	Otx1	A730044F23Rik|jv	orthodenticle homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr11-106677898-5	chr11	106677395	106678395	+	808.4400019999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 12 of 14)	intron (NM_001305158, intron 12 of 14)	37386.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	1.0	0.0	1.5	0.0	0.5	0.0
Merged-chr4-134372540-4	chr4	134372000	134373000	+	808.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019578)	promoter-TSS (NM_019578)	47.0	NM_001355493	56219.0	Mm.30978	NM_019578	ENSMUSG00000028838	Extl1	D430033M16Rik	exostoses (multiple)-like 1	protein-coding	1.0	0.0	2.5	0.0	0.5	1.5
Merged-chr17-34127575-2	chr17	34127087	34128087	+	808.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360530, intron 1 of 5)	intron (NM_001360530, intron 1 of 5)	2069.0	NM_001360530	14998.0	Mm.16373	NM_010386	ENSMUSG00000037649	H2-DMa	H-2Ma|H2-Ma	histocompatibility 2, class II, locus DMa	protein-coding	2.0	22.5	7.5	0.5	3.0	3.0
Merged-chr10-24727698-4	chr10	24727198	24728198	+	808.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15539.0	NM_008813	18605.0	Mm.27254	NM_008813	ENSMUSG00000037370	Enpp1	4833416E15Rik|AI428932|C76301|CD203c|E-NPP 1|E-NPP1|Ly-41|M6S1|NPP1|Npps|PC-1|Pca|Pca-1|Pdnp1|ttw|twy	ectonucleotide pyrophosphatase/phosphodiesterase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-45926660-3	chr1	45926127	45927127	+	808.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1033.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-59219881-3	chr6	59219389	59220389	+	808.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11019.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-69778218-4	chr2	69777727	69778727	+	808.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077684, intron 4 of 8)	intron (NM_001077684, intron 4 of 8)	11259.0	NM_001077684	75051.0	Mm.195726	NM_001077684	ENSMUSG00000070883	Ccdc173	4930525K21Rik|4930578N16Rik	coiled-coil domain containing 173	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-24652831-2	chr12	24652340	24653340	+	808.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_178357, intron 1 of 3)	intron (NM_178357, intron 1 of 3)	1469.0	NM_178357	194655.0	Mm.9616	NM_178357	ENSMUSG00000020653	Klf11	9830142A17|D12Ertd427e|Tieg2|Tieg2b|Tieg3	Kruppel-like factor 11	protein-coding	9.5	8.0	11.5	1.5	13.0	8.0
Merged-chr9-121298758-2	chr9	121298258	121299258	+	808.375	f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	1256.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	34.5	66.0	47.0	19.0	46.0	20.0
Merged-chr5-123369036-4	chr5	123368532	123369532	+	808.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029850, intron 4 of 5)	intron (NM_029850, intron 4 of 5)	24584.0	NM_029850	77045.0	Mm.151960	NM_029850	ENSMUSG00000029438	Bcl7a	4432415N06Rik|AI448316	B cell CLL/lymphoma 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84589911-4	chr12	84589421	84590421	+	808.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301427, intron 3 of 4)	CpG	20093.0	NM_001301427	12677.0	Mm.4405	NM_007701	ENSMUSG00000021239	Vsx2	Chx10|Hox-10|Hox10|or	visual system homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59360887-4	chr4	59360387	59361387	+	808.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 10 of 16)	L1MC4|LINE|L1	77746.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	29.5	30.0	53.0	25.5	37.5	23.0
Merged-chr9-118673493-2	chr9	118672993	118673993	+	808.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 11 of 27)	B3A|SINE|B2	-38199.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	79.0	278.0	185.5	91.0	259.0	157.0
Merged-chr11-115275112-2	chr11	115274613	115275613	+	808.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007997, intron 2 of 11)	intron (NM_007997, intron 2 of 11)	1856.0	NM_007997	14149.0	Mm.4719	NM_007997	ENSMUSG00000018861	Fdxr	AR	ferredoxin reductase	protein-coding	5.0	0.0	2.0	0.0	3.0	2.5
Merged-chr3-88476620-4	chr3	88476101	88477101	+	808.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15419.0	NM_001163489	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104204149-2	chr9	104203649	104204649	+	808.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 23 of 56)	B3|SINE|B2	58781.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-58440566-4	chr4	58440079	58441079	+	808.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_037278)	TTS (NR_037278)	519.0	NR_037278	100526502.0		NR_037278	ENSMUSG00000093293	Mir3095	mir-3095|mmu-mir-3095	microRNA 3095	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64085559-1	chr15	64085059	64086059	+	808.333313	f1_c57bl6.idr	Intergenic	Intergenic	-25111.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	41.0	92.0	64.5	40.5	113.0	101.0
Merged-chr3-93520325-1	chr3	93519825	93520825	+	808.333313	f0_balb.idr	promoter-TSS (NM_016740)	promoter-TSS (NM_016740)	-171.0	NM_016740	20195.0	Mm.280038	NM_016740	ENSMUSG00000027907	S100a11	EMAPI|Emap1|S100a14|S100c|cal	S100 calcium binding protein A11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-88735852-3	chr18	88735346	88736346	+	808.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	158361.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-71289620-3	chr11	71289088	71290088	+	808.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-4356.0	NR_027858	627984.0	Mm.390378	NM_001039234	ENSMUSG00000092528	Nlrp1c-ps	Nalp1c|Nlrp1c	NLR family, pyrin domain containing 1C, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132794655-4	chr1	132794171	132795171	+	808.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52874.0	NM_001160317	269116.0	Mm.326702	NM_182716	ENSMUSG00000026442	Nfasc	AA387016|D430023G06Rik|NF|mKIAA0756	neurofascin	protein-coding	4.5	0.0	1.0	0.0	0.0	3.0
Merged-chr5-148452074-2	chr5	148451574	148452574	+	808.299988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52170.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99245562-5	chr5	99245047	99246047	+	808.286682	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	7380.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	28.5	71.5	53.5	29.5	74.0	48.0
Merged-chr8-40986301-3	chr8	40985778	40986778	+	808.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026840, intron 4 of 5)	intron (NM_026840, intron 4 of 5)	-31190.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	0.0	0.0	1.5	4.0	2.5	0.0
Merged-chr11-101627057-5	chr11	101626536	101627536	+	808.266663	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025654)	promoter-TSS (NM_025654)	-913.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29498782-2	chr17	29498282	29499282	+	808.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	7737.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116371751-4	chr7	116371251	116372251	+	808.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011083, intron 13 of 32)	intron (NM_011083, intron 13 of 32)	-37561.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99459460-2	chr10	99458960	99459960	+	808.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-149711.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120480557-2	chr5	120480057	120481057	+	808.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_145565, intron 3 of 7)	intron (NM_145565, intron 3 of 7)	4010.0	NM_145565	231691.0	Mm.28685	NM_145565	ENSMUSG00000029597	Sds	4432411H13Rik|SDH	serine dehydratase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-48837738-4	chr11	48837257	48838257	+	808.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347446, exon 1 of 7)	exon (NM_001347446, exon 1 of 7)	286.0	NM_001347446	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127546514-3	chr10	127546070	127547070	+	808.231506	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 71 of 88)	intron (NM_008512, intron 71 of 88)	-12011.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr4-132803748-3	chr4	132803244	132804244	+	808.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-7380.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62448537-3	chr15	62448036	62449036	+	808.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-229085.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127932655-3	chr3	127932154	127933154	+	808.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040552, intron 3 of 4)	intron (NR_040552, intron 3 of 4)	16483.0	NR_040552	329753.0	Mm.119720	NR_040552	ENSMUSG00000104763	9830132P13Rik	9830132P13	RIKEN cDNA 9830132P13 gene	ncRNA	7.0	0.0	2.5	2.0	9.5	2.5
Merged-chr10-34267901-3	chr10	34267404	34268404	+	808.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14286.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180901263-4	chr1	180900762	180901762	+	808.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3012.0	NM_133705	69051.0	Mm.274180	NM_133705	ENSMUSG00000026520	Pycr2	1810018M05Rik|P5cr2	pyrroline-5-carboxylate reductase family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-38846630-3	chr19	38846132	38847132	+	808.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145952, intron 1 of 12)	intron (NM_145952, intron 1 of 12)	10053.0	NM_001362424	209478.0	Mm.391153	NM_145952	ENSMUSG00000048720	Tbc1d12	BC033574	TBC1D12: TBC1 domain family, member 12	protein-coding	4.5	6.0	8.0	12.0	20.5	19.0
Merged-chr4-88315243-4	chr4	88314774	88315774	+	808.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081184, intron 21 of 43)	(TCCC)n|Simple_repeat|Simple_repeat	123652.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	0.0	0.5	1.5	0.0	0.0	1.0
Merged-chr11-98031617-3	chr11	98031090	98032090	+	808.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4666.0	NM_009078	19921.0	Mm.10247	NM_009078	ENSMUSG00000017404	Rpl19	-	ribosomal protein L19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-7188090-7	chr7	7187535	7188535	+	808.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16682.0	NM_146179	232854.0	Mm.184857	NM_146179	ENSMUSG00000034538	Zfp418	A230102I05Rik	zinc finger protein 418	protein-coding	7.0	13.0	4.5	3.5	19.0	22.5
Merged-chr14-32931256-3	chr14	32930691	32931691	+	808.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178791, intron 7 of 7)	intron (NM_178791, intron 7 of 7)	-60191.0	NM_001146021	67580.0	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-28422769-2	chr6	28422269	28423269	+	808.166687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007480)	promoter-TSS (NM_007480)	-835.0	NM_007480	11844.0	Mm.389075	NM_007480	ENSMUSG00000020440	Arf5	-	ADP-ribosylation factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35652696-3	chr18	35652192	35653192	+	808.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001270646, exon 1 of 1)	exon (NM_001270646, exon 1 of 1)	2507.0	NM_001270646	381148.0	Mm.297784	NM_001270646	ENSMUSG00000073600	Prob1	Gm1614	proline rich basic protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31918590-4	chr16	31918081	31919081	+	808.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15270.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78067447-2	chr10	78066947	78067947	+	808.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1921.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114577125-3	chr7	114576621	114577621	+	808.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14149.0	NM_177382	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19324732-2	chr7	19324232	19325232	+	808.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14687.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-5313478-2	chr9	5312978	5313978	+	808.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007609, intron 1 of 8)	L1_Mus2|LINE|L1	4629.0	NM_007609	12363.0	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-88522109-2	chr9	88521609	88522609	+	808.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_040721, intron 2 of 4)	intron (NR_040721, intron 2 of 4)	788.0	NR_040721	72655.0	Mm.21798	NR_040721	ENSMUSG00000097195	Snhg5	2810026P18Rik|4933428I09Rik|mU50HG-b	small nucleolar RNA host gene 5	ncRNA	6.0	8.5	3.0	3.0	3.0	7.0
Merged-chr3-137862774-2	chr3	137862222	137863222	+	808.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1765.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	0.5	1.0	0.0	5.5	4.0	3.0
Merged-chr7-143373379-2	chr7	143372879	143373879	+	808.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008434, intron 15 of 15)	intron (NM_008434, intron 15 of 15)	-42729.0	NR_045842	71153.0	Mm.398340	NR_045842	ENSMUSG00000101360	4933417O13Rik	-	RIKEN cDNA 4933417O13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101197314-2	chr15	101196814	101197814	+	808.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_007395, intron 3 of 8)	B1_Mur2|SINE|Alu	3445.0	NR_105927	102466774.0		NR_105927	ENSMUSG00000106563	Mir6962	mmu-mir-6962	microRNA 6962	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34520851-4	chr19	34520376	34521376	+	808.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	6598.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62738334-2	chr4	62737834	62738834	+	808.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	64360.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181436499-3	chr2	181435989	181436989	+	808.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028125, intron 1 of 2)	intron (NM_028125, intron 1 of 2)	-12101.0	NM_027656	72147.0	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-65342788-3	chr14	65342284	65343284	+	808.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15892.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	21.0	47.0	11.5	18.0	25.5	15.0
Merged-chr2-51148560-4	chr2	51148024	51149024	+	808.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028810, intron 1 of 4)	intron (NM_028810, intron 1 of 4)	587.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	7.0	18.5	7.5	8.0	25.5	8.0
Merged-chr18-20640148-4	chr18	20639642	20640642	+	808.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155534, intron 1 of 2)	intron (NR_155534, intron 1 of 2)	-25108.0	NM_013697	22139.0	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98747275-7	chr11	98746554	98747554	+	808.0761719999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178060, intron 1 of 8)	intron (NM_178060, intron 1 of 8)	5269.0	NM_001313983	21833.0	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-30183922-4	chr11	30183369	30184369	+	808.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175836, intron 1 of 34)	intron (NM_175836, intron 1 of 34)	14388.0	NM_009260	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	3.0	12.5	14.0	19.0	8.5	9.0
Merged-chr16-98041867-4	chr16	98041361	98042361	+	808.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40578.0	NR_015491	320586.0	Mm.442230	NR_015491		A630089N07Rik	-	RIKEN cDNA A630089N07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80358025-3	chr12	80357523	80358523	+	808.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177267, intron 7 of 8)	intron (NM_177267, intron 7 of 8)	33654.0	NR_037207	100526530.0		NR_037207	ENSMUSG00000105972	Mir1843a	Mir1843|mir-1843a|mmu-mir-1843|mmu-mir-1843a	microRNA 1843a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122762743-6	chr8	122762235	122763235	+	808.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151739)	promoter-TSS (NR_151739)	26.0	NR_151739	382036.0	Mm.132367	NR_151739		A530010L16Rik	BC032935|Gm1908|Gm45801	RIKEN cDNA A530010L16 gene	ncRNA	13.0	18.0	6.0	5.0	25.5	25.0
Merged-chr13-78043430-4	chr13	78042923	78043923	+	808.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163420, intron 8 of 8)	intron (NM_001163420, intron 8 of 8)	18521.0	NM_029315	75507.0	Mm.443255	NM_029315	ENSMUSG00000093668	Pou5f2	1700013G10Rik|SPRM-1|Sprm1	POU domain class 5, transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43447824-4	chr1	43447321	43448321	+	808.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	2070.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-59013157-4	chr17	59012503	59013503	+	808.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_145522)	TTS (NR_145522)	319.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-54963802-3	chr9	54963282	54964282	+	808.027771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-12828.0	NM_145229	246735.0	Mm.473773	NM_145229	ENSMUSG00000044820	AY074887	Mcpr1	cDNA sequence AY074887	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104028871-4	chr8	104028374	104029374	+	808.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72751.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117081446-2	chr11	117080946	117081946	+	808.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4098.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-101515259-2	chr14	101514759	101515759	+	808.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	B4A|SINE|B4	93932.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134638043-3	chr4	134637556	134638556	+	808.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 2 of 11)	intron (NM_207237, intron 2 of 11)	66234.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50535148-2	chr17	50534648	50535648	+	808.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	Lx7|LINE|L1	25601.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165391816-2	chr2	165391316	165392316	+	808.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3557.0	NM_178411	228876.0	Mm.26316	NM_178411	ENSMUSG00000017667	Zfp334	D2Ertd535e	zinc finger protein 334	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35047967-2	chr17	35047432	35048432	+	808.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1187.0	NM_001146215	17687.0	Mm.24192	NM_013600	ENSMUSG00000007035	Msh5	Mut5	mutS homolog 5	protein-coding	14.0	101.0	45.5	35.5	91.5	58.0
Merged-chr1-184811172-2	chr1	184810672	184811672	+	808.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001290273, exon 1 of 7)	5' UTR (NM_001290273, exon 1 of 7)	128.0	NM_001290273	66112.0	Mm.272457	NM_001081361	ENSMUSG00000026621	Marc1	1300013F15Rik|Mosc1	mitochondrial amidoxime reducing component 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72013916-1	chr8	72013416	72014416	+	808.0	f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-4290.0	NM_024444	72054.0	Mm.160020	NM_024444	ENSMUSG00000003484	Cyp4f18	1810054N16Rik|Cyp4f3|Cypf18	cytochrome P450, family 4, subfamily f, polypeptide 18	protein-coding	15.0	62.0	24.0	0.0	0.0	1.5
Merged-chr4-9627773-2	chr4	9627273	9628273	+	808.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177856)	TTS (NM_001177856)	15944.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-87624147-1	chr15	87623647	87624647	+	808.0	f0_balb.idr	intron (NM_001252310, intron 1 of 3)	CpG	-1083.0	NM_134096	106014.0	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr9-50563339-2	chr9	50562839	50563839	+	808.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008360, intron 2 of 7)	intron (NM_008360, intron 2 of 7)	-2071.0	NM_025687	66654.0	Mm.442255	NM_025687	ENSMUSG00000032065	Tex12	5730518K06Rik	testis expressed gene 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87919972-2	chr6	87919472	87920472	+	808.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173737, intron 3 of 6)	MTD|LTR|ERVL-MaLR	5996.0	NM_173737	232210.0	Mm.246241	NM_173737	ENSMUSG00000030060	Hmces	8430410A17Rik|C85376	5-hydroxymethylcytosine (hmC) binding, ES cell specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58235439-2	chr11	58234935	58235935	+	808.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	20458.0	NM_019440	54396.0	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	6.5	16.5	0.0	0.0	0.0	1.5
Merged-chr1-189656126-2	chr1	189655626	189656626	+	808.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081363, intron 12 of 17)	ORR1C1|LTR|ERVL-MaLR	31960.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116492169-1	chr11	116491669	116492669	+	808.0	f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-1823.0	NM_026364	67763.0	Mm.25125	NM_026364	ENSMUSG00000015869	Prpsap1	5730409F23Rik|PAP39	phosphoribosyl pyrophosphate synthetase-associated protein 1	protein-coding	1.5	2.0	1.0	3.0	2.5	3.0
Merged-chr7-141048981-4	chr7	141048482	141049482	+	808.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	-12292.0	NM_177897	330671.0	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71326765-2	chr2	71326265	71327265	+	808.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 4 of 17)	B1F|SINE|Alu	40789.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64358529-1	chr1	64358029	64359029	+	808.0	f0_balb.idr	Intergenic	Intergenic	-174275.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-94269380-1	chr6	94268880	94269880	+	808.0	f0_balb.idr	intron (NM_001029850, intron 1 of 23)	MTC|LTR|ERVL-MaLR	14537.0	NM_010367	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	2.0	4.5	3.5	4.0	1.5	4.5
Merged-chr8-88698074-2	chr8	88697597	88698597	+	808.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128170, intron 1 of 17)	intron (NM_001128170, intron 1 of 17)	1069.0	NM_001128171	74256.0	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	21.0	39.5	24.0	0.5	10.0	10.0
Merged-chr12-110707558-2	chr12	110707058	110708058	+	808.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-11163.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-63912619-2	chr7	63912123	63913123	+	808.0	f0_balb.idr|f0_c57.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-4234.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	86.5	297.5	135.5	87.0	232.5	111.0
Merged-chr11-70625665-2	chr11	70625165	70626165	+	808.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6471.0	NM_009603	11448.0	Mm.4980	NM_009603	ENSMUSG00000014609	Chrne	AChrepsilon|Acre|nAChRE	cholinergic receptor, nicotinic, epsilon polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80184687-2	chr12	80184187	80185187	+	808.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 9 of 20)	intron (NM_134156, intron 9 of 20)	-51843.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80144273-2	chr10	80143773	80144773	+	808.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347092, intron 2 of 2)	BC1_Mm|scRNA|scRNA	1958.0	NM_025313	66043.0	Mm.278560	NM_025313	ENSMUSG00000003072	Atp5d	0610008F14Rik|1500000I11Rik|AA960090|AI876556|AU020773|Atp5f1d|C85518	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55455181-2	chr11	55454681	55455681	+	808.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 1 of 3)	intron (NM_009720, intron 1 of 3)	6027.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27200861-3	chr3	27200344	27201344	+	808.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	17840.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118154740-2	chr11	118154240	118155240	+	808.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25521.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5513117-2	chr11	5512617	5513617	+	808.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-7524.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	11.0	31.0	14.0	5.5	17.5	17.0
Merged-chr10-17422749-3	chr10	17422259	17423259	+	808.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-300469.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75631839-2	chr11	75631339	75632339	+	808.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008916, intron 1 of 11)	intron (NM_008916, intron 1 of 11)	819.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	3.5	9.0	2.0	3.5	9.0	2.0
Merged-chr13-112366905-4	chr13	112366406	112367406	+	808.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168403, intron 9 of 11)	intron (NM_001168403, intron 9 of 11)	78388.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	6.5	6.0	4.0	4.5	4.5	3.5
Merged-chr11-5737330-4	chr11	5736847	5737847	+	808.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361588, intron 1 of 6)	MER44B|DNA|TcMar-Tigger	3829.0	NM_001361590	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	2.5	4.5	7.0	0.0	6.5	6.5
Merged-chr12-33310091-2	chr12	33309591	33310591	+	808.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033436, intron 1 of 7)	L1MB3|LINE|L1	7576.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36836684-3	chr1	36836198	36837198	+	808.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 8 of 40)	intron (NM_018872, intron 8 of 40)	57714.0	NM_001289612	22637.0	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109060150-1	chr4	109059650	109060650	+	808.0	f1_c57bl6.idr	TTS (NM_001355191)	TTS (NM_001355191)	42495.0	NR_030432	791075.0		NR_030432	ENSMUSG00000076444	Mir761	Mirn761|mir-761|mmu-mir-761	microRNA 761	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88635691-2	chr5	88635191	88636191	+	808.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 11 of 13)	PB1D11|SINE|Alu	39889.0	NM_001098476	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98769491-2	chr7	98768986	98769986	+	808.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65626.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	3.5	7.0	12.5	12.5	1.0	1.5
Merged-chr16-24711134-3	chr16	24710626	24711626	+	808.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 7 of 12)	RMER6C|LTR|ERVK	-10729.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59851562-2	chr15	59851062	59852062	+	808.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56603.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30945115-2	chr2	30944615	30945615	+	808.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-7886.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110106300-2	chr5	110105800	110106800	+	808.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_207279)	TTS (NM_207279)	1897.0	NM_145147	107999.0	Mm.86267	NM_145147	ENSMUSG00000033434	Gtpbp6	AV119224|Pgbpll|pgpl	GTP binding protein 6 (putative)	protein-coding	2.5	0.0	0.0	4.0	1.5	1.0
Merged-chr19-45541665-2	chr19	45541165	45542165	+	808.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	18899.0	NM_001330506	56626.0	Mm.46509	NM_020032	ENSMUSG00000025218	Poll	1110003P06Rik|AV007317	polymerase (DNA directed), lambda	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103675712-2	chr11	103675212	103676212	+	808.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21998.0	NM_019650	56494.0	Mm.195451	NM_019650	ENSMUSG00000020946	Gosr2	2310032N09Rik|C76855|Gs27|SNARE|membrin	golgi SNAP receptor complex member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25975395-3	chr8	25974863	25975863	+	808.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029884, intron 1 of 17)	intron (NM_029884, intron 1 of 17)	1381.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	83.5	130.0	113.5	29.5	36.0	24.0
Merged-chr14-112463186-1	chr14	112462686	112463686	+	808.0	f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	788071.0	NM_198865	75409.0	Mm.235097	NM_029273	ENSMUSG00000033214	Slitrk5	2610019D03Rik	SLIT and NTRK-like family, member 5	protein-coding	4.0	0.0	2.0	2.5	4.5	1.5
Merged-chr8-4257283-1	chr8	4256783	4257783	+	808.0	f1_c57bl6.idr	TTS (NM_183315)	TTS (NM_183315)	1991.0	NM_183315	330695.0	Mm.34210	NM_183315	ENSMUSG00000048644	Ctxn1	BC028881|Ctxn	cortexin 1	protein-coding	0.0	0.0	3.0	0.0	0.0	0.0
Merged-chr11-96964818-2	chr11	96964318	96965318	+	808.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_003293, exon 6 of 6)	non-coding (NR_003293, exon 6 of 6)	12870.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45304578-2	chr7	45304078	45305078	+	808.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175130, intron 24 of 24)	intron (NM_175130, intron 24 of 24)	-20380.0	NR_110499	100040970.0	Mm.289810	NR_110499	ENSMUSG00000046721	Rpl14-ps1	Gm9811	ribosomal protein L14, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135067313-4	chr4	135066809	135067809	+	808.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53336.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38452440-2	chr15	38451940	38452940	+	808.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38107.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29870306-2	chr2	29869806	29870806	+	808.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207298, intron 1 of 11)	intron (NM_207298, intron 1 of 11)	812.0	NM_207298	99151.0	Mm.296336	NM_207298	ENSMUSG00000039787	Cercam	2600006K01Rik|AL024097|Ceecam1	cerebral endothelial cell adhesion molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-51236700-2	chr18	51236200	51237200	+	808.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081224, intron 1 of 1)	(CA)n|Simple_repeat|Simple_repeat	118802.0	NM_001081224	71373.0	Mm.63546	NM_001081224	ENSMUSG00000073565	Prr16	5430406M13Rik|AI607429	proline rich 16	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr6-134036873-6	chr6	134036340	134037340	+	807.972229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	1140.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	53.5	118.5	53.5	46.5	67.0	62.0
Merged-chr5-24452505-4	chr5	24452002	24453002	+	807.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_139153, exon 1 of 18)	exon (NM_139153, exon 1 of 18)	325.0	NM_139153	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36584645-2	chr5	36584133	36585133	+	807.958374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113362, intron 2 of 14)	intron (NM_001113362, intron 2 of 14)	1593.0	NM_001113362	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-99263471-4	chr13	99262961	99263961	+	807.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78638.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3601336-4	chr7	3600774	3601774	+	807.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14883.0	NM_175632	232790.0	Mm.358882	NM_175632	ENSMUSG00000054594	Oscar	mOSCAR|mOSCAR-M1|mOSCAR-M2|mOSCAR-M3	osteoclast associated receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86790617-3	chr6	86790128	86791128	+	807.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013471, intron 1 of 12)	intron (NM_013471, intron 1 of 12)	2956.0	NM_013471	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	9.5	7.5	11.5	5.0	25.0	15.0
Merged-chr11-79030785-3	chr11	79030286	79031286	+	807.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045873, intron 4 of 5)	intron (NR_045873, intron 4 of 5)	7189.0	NR_045873	790910.0	Mm.440410	NR_045873		Gm11201	-	predicted gene 11201	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98767500-4	chr11	98766996	98767996	+	807.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145434)	TTS (NM_145434)	7881.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82567830-4	chr18	82567327	82568327	+	807.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025251, intron 2 of 6)	intron (NM_001025251, intron 2 of 6)	13319.0	NM_001025254	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94164498-3	chr13	94164023	94165023	+	807.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	106727.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84112241-4	chr17	84111756	84112756	+	807.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33596.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106202180-2	chr11	106201680	106202680	+	807.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026009, intron 11 of 12)	intron (NM_026009, intron 11 of 12)	-8577.0	NM_001252449	72149.0	Mm.403722	NM_028126	ENSMUSG00000069631	Strada	2610019A05Rik|6030402H20Rik|AI480680|E130112C09Rik	STE20-related kinase adaptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-99171980-2	chr11	99171447	99172447	+	807.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-16870.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90197021-4	chr16	90196529	90197529	+	807.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23713.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96747076-4	chr3	96746615	96747615	+	807.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026406, intron 1 of 8)	intron (NM_026406, intron 1 of 8)	19504.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98771336-3	chr7	98770818	98771818	+	807.866638	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63794.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	7.0	24.0	11.0	3.0	0.0	5.0
Merged-chr17-87307062-2	chr17	87306562	87307562	+	807.857178	f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 4 of 19)	intron (NM_028639, intron 4 of 19)	24176.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-42512257-2	chr18	42511757	42512757	+	807.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360881, intron 1 of 20)	CpG	770.0	NR_110344	56070.0	Mm.270511	NM_001039474	ENSMUSG00000024498	Tcerg1	2410022J09Rik|2900090C16Rik|AI428505|CA150b|FBP23|FBP28|Taf2s|ca150|p144	transcription elongation regulator 1 (CA150)	protein-coding	7.5	50.5	41.0	16.0	50.5	53.5
Merged-chr1-43504377-2	chr1	43503877	43504877	+	807.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	58626.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44325163-2	chr10	44324663	44325663	+	807.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001314013, intron 5 of 6)	intron (NM_001314013, intron 5 of 6)	-34513.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117288141-4	chr4	117287654	117288654	+	807.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310730, intron 2 of 10)	MIRb|SINE|MIR	1301.0	NM_001310730	66743.0	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	0.0	14.5	2.5	5.5	11.5	6.0
Merged-chr7-99249750-3	chr7	99249244	99250244	+	807.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11133.0	NM_177448	233549.0	Mm.208030	NM_177448	ENSMUSG00000052396	Mogat2	DGAT2L5|MGAT2|Mgat1l	monoacylglycerol O-acyltransferase 2	protein-coding	0.0	5.0	0.0	0.0	4.0	0.0
Merged-chr1-135766408-3	chr1	135765895	135766895	+	807.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013750, exon 1 of 2)	5' UTR (NM_013750, exon 1 of 2)	310.0	NM_013750	27280.0	Mm.34346	NM_013750	ENSMUSG00000041801	Phlda3	Tih1	pleckstrin homology like domain, family A, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69891050-2	chr11	69890550	69891550	+	807.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_153788, intron 2 of 21)	intron (NM_153788, intron 2 of 21)	4489.0	NM_153788	216859.0	Mm.288671	NM_153788	ENSMUSG00000001588	Acap1	Centb1	ArfGAP with coiled-coil, ankyrin repeat and PH domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-57744719-2	chr14	57744219	57745219	+	807.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_015771, intron 1 of 7)	intron (NM_015771, intron 1 of 7)	1404.0	NM_015771	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152096195-4	chr4	152095690	152096690	+	807.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285999)	promoter-TSS (NM_001285999)	-529.0	NM_001285999	269608.0	Mm.332102	NM_001004156	ENSMUSG00000039713	Plekhg5	BC023181|Syx	pleckstrin homology domain containing, family G (with RhoGef domain) member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100226046-4	chr7	100225565	100226565	+	807.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1542.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-99804404-4	chr6	99803926	99804926	+	807.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78034.0	NM_001037539	50501.0	Mm.87365	NM_015768	ENSMUSG00000030069	Prok2	Bv8|PK2|Prok1	prokineticin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-78037705-3	chr2	78037196	78038196	+	807.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13481.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51087891-3	chr14	51087387	51088387	+	807.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3190.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	0.0	0.0	0.0	0.0	6.5	2.0
Merged-chr10-79874482-3	chr10	79873999	79874999	+	807.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033210, exon 1 of 6)	non-coding (NR_033210, exon 1 of 6)	135.0	NM_181681	216152.0	Mm.29678	NM_181681	ENSMUSG00000035835	Plppr3	Lppr3|Prg2	phospholipid phosphatase related 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36737499-3	chr1	36736992	36737992	+	807.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040290, intron 5 of 8)	intron (NR_040290, intron 5 of 8)	22954.0	NR_040290	71166.0	Mm.157049	NR_040290	ENSMUSG00000102416	4933424G06Rik	1700104I15Rik	RIKEN cDNA 4933424G06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76409535-3	chr16	76409041	76410041	+	807.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-35714.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94992049-4	chr11	94991587	94992587	+	807.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172261, exon 1 of 10)	exon (NM_172261, exon 1 of 10)	875.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46940786-2	chr8	46940286	46941286	+	807.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-46101.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52954715-2	chr6	52954215	52955215	+	807.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 1 of 4)	intron (NM_173406, intron 1 of 4)	-45095.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-32164878-2	chr14	32164378	32165378	+	807.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284319)	promoter-TSS (NM_001284319)	-708.0	NM_001284319	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29364268-4	chr19	29363766	29364766	+	807.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2395.0	NM_026362	67759.0	Mm.275511	NM_026362	ENSMUSG00000016495	Plgrkt	1110007H22Rik|5033414D02Rik|AI852040|Plg-R(KT)|Plg-RKT	plasminogen receptor, C-terminal lysine transmembrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37308187-4	chr1	37307689	37308689	+	807.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	8351.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45234877-2	chr2	45234377	45235377	+	807.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117435.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53082689-2	chr4	53082189	53083189	+	807.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 15 of 49)	intron (NM_013454, intron 15 of 49)	70809.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31452995-4	chr15	31452375	31453375	+	807.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145852, intron 1 of 4)	intron (NM_145852, intron 1 of 4)	814.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0.0	4.5	0.5	0.0	11.0	0.5
Merged-chr12-73967291-4	chr12	73966765	73967765	+	807.733337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178392, intron 1 of 9)	ID_B1|SINE|B4	2735.0	NM_178392	75627.0	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76578054-4	chr11	76577564	76578564	+	807.729187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198894)	promoter-TSS (NM_198894)	-325.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	8.5	2.5	4.0	14.5	10.0	7.5
Merged-chr10-75516602-4	chr10	75516069	75517069	+	807.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347201, intron 1 of 5)	intron (NM_001347201, intron 1 of 5)	812.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78428721-2	chr15	78428221	78429221	+	807.6999509999999	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_110357, exon 1 of 7)	non-coding (NR_110357, exon 1 of 7)	157.0	NR_110357	72844.0	Mm.390816	NM_001081367	ENSMUSG00000033287	Kctd17	2900008M13Rik|AA414907|AW742389|N28155	potassium channel tetramerisation domain containing 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20829173-3	chr16	20828673	20829673	+	807.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94662.0	NM_009379	21832.0	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72033089-3	chr8	72032578	72033578	+	807.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	-23452.0	NM_024444	72054.0	Mm.160020	NM_024444	ENSMUSG00000003484	Cyp4f18	1810054N16Rik|Cyp4f3|Cypf18	cytochrome P450, family 4, subfamily f, polypeptide 18	protein-coding	1.0	0.0	0.0	1.5	0.0	0.0
Merged-chr6-53455677-3	chr6	53455188	53456188	+	807.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 5 of 10)	intron (NM_001327821, intron 5 of 10)	-117686.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33956730-2	chr17	33956247	33957247	+	807.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357329, intron 1 of 19)	intron (NM_001357329, intron 1 of 19)	657.0	NM_001357329	224705.0	Mm.448614	NM_172620	ENSMUSG00000024319	Vps52	ARE1|D130068D18|D430041K17Rik|SAC2|Sacm2l|tclw5	VPS52 GARP complex subunit	protein-coding	7.5	30.0	29.0	4.0	23.0	30.5
Merged-chr6-16897164-3	chr6	16896667	16897667	+	807.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 1 of 6)	intron (NM_031198, intron 1 of 6)	1274.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122307939-3	chr7	122307389	122308389	+	807.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	18764.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-58911223-2	chr4	58910723	58911723	+	807.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355697, intron 1 of 49)	intron (NM_001355697, intron 1 of 49)	707.0	NM_001355697	230249.0	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|Ecpas|mKIAA0368	expressed sequence AI314180	protein-coding	36.5	86.0	70.5	50.5	113.5	79.0
Merged-chr16-93027805-3	chr16	93027360	93028360	+	807.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-201786.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32222947-2	chr11	32222447	32223447	+	807.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291818)	promoter-TSS (NM_001291818)	-654.0	NM_001291818	13650.0	Mm.11545	NM_010117	ENSMUSG00000020282	Rhbdf1	C16ORF8|Dist|Dist1|Egfr-rs|mKIAA4242	rhomboid 5 homolog 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-79997306-4	chr7	79996802	79997802	+	807.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27512.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80905074-4	chr7	80904669	80905669	+	807.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291280)	promoter-TSS (NM_001291280)	-107.0	NM_001291280	68039.0	Mm.22246	NM_026523	ENSMUSG00000025723	Nmb	3110023K12Rik	neuromedin B	protein-coding	1.0	1.0	2.0	0.0	0.0	5.5
Merged-chr3-84175445-3	chr3	84174942	84175942	+	807.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_036654)	TTS (NR_036654)	804.0	NR_036654	624713.0	Mm.442604	NR_036654		Gm6525	EG624713	ribosomal protein L36a pseudogene	pseudo	0.0	3.0	0.0	0.0	7.0	0.0
Merged-chr17-27754263-3	chr17	27753759	27754759	+	807.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271511, intron 3 of 3)	intron (NM_001271511, intron 3 of 3)	-23256.0	NM_001357728	30051.0	Mm.26768	NM_013891	ENSMUSG00000024215	Spdef	PDEF|Pse	SAM pointed domain containing ets transcription factor	protein-coding	0.0	3.0	0.0	3.0	2.0	2.5
Merged-chr15-96776844-4	chr15	96776328	96777328	+	807.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77100.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	1.5	0.5	1.0	1.5	0.5	1.5
Merged-chr16-44831055-2	chr16	44830555	44831555	+	807.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_207244, intron 1 of 5)	intron (NM_207244, intron 1 of 5)	10327.0	NM_207244	239849.0	Mm.445045	NM_207244	ENSMUSG00000062082	Cd200r4	F630107N04Rik|MCD200RLa	CD200 receptor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11694309-4	chr11	11693807	11694807	+	807.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301863, intron 1 of 7)	intron (NM_001301863, intron 1 of 7)	4130.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.0	2.0	5.0	0.0	2.0	5.0
Merged-chr9-108827635-3	chr9	108827136	108828136	+	807.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001359573, exon 1 of 36)	exon (NM_001359573, exon 1 of 36)	1591.0	NM_001359572	107934.0	Mm.39945	NM_080437	ENSMUSG00000023473	Celsr3	Adgrc3|Fmi1|flamingo|mKIAA0812	cadherin, EGF LAG seven-pass G-type receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67343423-4	chr18	67342997	67343997	+	807.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007702)	promoter-TSS (NM_007702)	-67.0	NM_007702	12683.0	Mm.449	NM_007702	ENSMUSG00000024526	Cidea	AW212747	cell death-inducing DNA fragmentation factor, alpha subunit-like effector A	protein-coding	1.0	1.0	1.0	2.0	0.0	0.0
Merged-chr5-140411591-3	chr5	140411093	140412093	+	807.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7712.0	NM_133916	27979.0	Mm.21671	NM_133916	ENSMUSG00000056076	Eif3b	AL033316|AL033334|AL033369|AW208965|D5Wsu45e|EIF3-ETA|EIF3-P110|EIF3-P116|Eif3s9|PRT1	eukaryotic translation initiation factor 3, subunit B	protein-coding	1.5	9.5	1.0	0.0	10.0	8.0
Merged-chr4-44071947-3	chr4	44071441	44072441	+	807.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015828, intron 1 of 11)	intron (NM_015828, intron 1 of 11)	776.0	NM_001357539	50798.0	Mm.256718	NM_015828	ENSMUSG00000028479	Gne	2310066H07Rik|DMRV|GLCNE|IBM2|NM|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113910714-3	chr5	113910223	113911223	+	807.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2017.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	14.0	27.0	18.0	24.5	14.0	41.5
Merged-chr11-86591603-4	chr11	86591101	86592101	+	807.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 10 of 11)	intron (NM_001356531, intron 10 of 11)	-7443.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82088154-4	chr11	82087655	82088655	+	807.520813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13690.0	NM_011331	20293.0	Mm.867	NM_011331	ENSMUSG00000035352	Ccl12	MCP-5|Scya12	chemokine (C-C motif) ligand 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108393067-4	chr8	108392563	108393563	+	807.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	191614.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0.5	1.0	2.0	0.0	0.0	0.5
Merged-chr9-56213586-2	chr9	56213086	56214086	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172924, intron 6 of 6)	intron (NM_172924, intron 6 of 6)	-52516.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45059860-2	chr7	45059360	45060360	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022999, intron 4 of 6)	intron (NM_022999, intron 4 of 6)	1792.0	NM_022999	65116.0	Mm.379098	NM_022999	ENSMUSG00000007837	Prrg2	1600014G02Rik|2510041M06Rik|N4WBP1	proline-rich Gla (G-carboxyglutamic acid) polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57476707-2	chr17	57476207	57477207	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 19 of 22)	RLTR17B_Mm|LTR|ERVK	68607.0	NM_001104591	224916.0	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11347997-3	chr8	11347537	11348537	+	807.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009932, intron 3 of 47)	intron (NM_009932, intron 3 of 47)	-35211.0	NM_009931	12826.0	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137287603-2	chr5	137287103	137288103	+	807.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290010)	promoter-TSS (NM_001290010)	-651.0	NM_009599	11423.0	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73801007-2	chr13	73800507	73801507	+	807.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011390, exon 17 of 24)	exon (NM_011390, exon 17 of 24)	37310.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92278900-1	chr5	92278400	92279400	+	807.5	f1_c57bl6.idr	promoter-TSS (NM_001163687)	promoter-TSS (NM_001163687)	-719.0	NM_025972	67111.0	Mm.28890	NM_025972	ENSMUSG00000029413	Naaa	2210023K21Rik|3830414F09Rik|Asahl	N-acylethanolamine acid amidase	protein-coding	40.0	128.5	99.5	43.0	53.5	60.0
Merged-chr15-103316125-2	chr15	103315625	103316625	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356627, intron 4 of 7)	intron (NM_001356627, intron 4 of 7)	-5687.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19475162-2	chr7	19474659	19475659	+	807.5	f0_c57.idr|f1_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-16665.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	0.0	16.5	18.0	0.0	1.5	3.0
Merged-chr11-113753264-2	chr11	113752768	113753768	+	807.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1453.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64743214-2	chr5	64742720	64743720	+	807.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-60303.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	5.0	27.0	3.5	11.5	2.0	4.0
Merged-chr14-31272455-1	chr14	31271955	31272955	+	807.5	f0_balb.idr	intron (NM_001033668, intron 53 of 77)	(CAAAA)n|Simple_repeat|Simple_repeat	20966.0	NM_027088	104416.0	Mm.3779	NM_027088	ENSMUSG00000021901	Bap1	2300006C11Rik|AA989761|AW553466|mKIAA0272|uch-x4	Brca1 associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79569004-4	chr3	79568578	79569578	+	807.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152118, exon 1 of 2)	non-coding (NR_152118, exon 1 of 2)	886.0	NR_152118	75879.0	Mm.410800	NR_152118		4930589L23Rik	-	RIKEN cDNA 4930589L23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-63864891-2	chr17	63864391	63865391	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 1 of 18)	intron (NM_001037997, intron 1 of 18)	910.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-12499128-2	chr4	12498628	12499628	+	807.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-327113.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86545847-2	chr11	86545347	86546347	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199045, intron 1 of 9)	intron (NM_001199045, intron 1 of 9)	856.0	NM_001199046	56427.0	Mm.383207	NM_019756	ENSMUSG00000020513	Tubd1	4930550G19Rik|Tubd	tubulin, delta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34378373-4	chr7	34377971	34378971	+	807.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025948, intron 1 of 10)	intron (NM_025948, intron 1 of 10)	11234.0	NM_001360654	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-99044956-4	chr14	99044470	99045470	+	807.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175245, intron 1 of 2)	PB1D10|SINE|Alu	1166.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83658427-2	chr7	83657927	83658927	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 12 of 18)	B3|SINE|B2	-2932.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	11.5	9.0	20.0	7.5	38.0	17.0
Merged-chr19-19258258-2	chr19	19257758	19258758	+	807.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-147062.0	NM_001043354	225998.0	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta|hstp	RAR-related orphan receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-58485237-4	chr2	58484759	58485759	+	807.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355048, intron 3 of 10)	intron (NM_001355048, intron 3 of 10)	76151.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-143954086-2	chr2	143953586	143954586	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024281, intron 16 of 23)	intron (NM_024281, intron 16 of 23)	38755.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65974215-2	chr5	65973715	65974715	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081104, intron 4 of 4)	intron (NM_001081104, intron 4 of 4)	7091.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4055766-2	chr19	4055266	4056266	+	807.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3681.0	NM_144869	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76765960-4	chr15	76765455	76766455	+	807.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	-42110.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	9.0	1.5	7.0	10.5	10.0	7.0
Merged-chr3-40539791-2	chr3	40539291	40540291	+	807.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175515)	promoter-TSS (NM_175515)	-976.0	NM_175515	380614.0	Mm.105309	NM_175515	ENSMUSG00000060798	Intu	9230116I04Rik|9430087H23Rik|Pdzd6|Pdzk6|mKIAA1284	inturned planar cell polarity protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101123741-2	chr7	101123241	101124241	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199012, intron 2 of 20)	intron (NM_199012, intron 2 of 20)	14966.0	NM_199012	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-111121576-2	chr7	111121076	111122076	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_015573, intron 1 of 2)	intron (NR_015573, intron 1 of 2)	1099.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84181479-2	chr12	84180979	84181979	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	12536.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-10555033-2	chr10	10554533	10555533	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026405, intron 1 of 2)	intron (NM_026405, intron 1 of 2)	3174.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	19.0	32.5	44.0	19.0	32.5	41.5
Merged-chr1-146969012-2	chr1	146968512	146969512	+	807.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	471325.0	NM_001145807	215378.0	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89797376-2	chr3	89796876	89797876	+	807.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	23767.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117426099-2	chr8	117425599	117426599	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 6 of 20)	L1MC1|LINE|L1	-26924.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74286908-2	chr1	74286408	74287408	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039509, intron 2 of 9)	intron (NM_001039509, intron 2 of 9)	1874.0	NM_001039509	56695.0	Mm.384726	NM_019999	ENSMUSG00000026179	Pnkd	2210013N15Rik|2810403H05Rik|AI854243|Brp17|MNCb-5687|MR-1|Tahccp2	paroxysmal nonkinesiogenic dyskinesia	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70778290-2	chr11	70777790	70778790	+	807.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13843.0	NM_177565	193043.0	Mm.40966	NM_177565	ENSMUSG00000043602	Zfp3	AI854635|B230309J24|Fnp-1|Zfp-3	zinc finger protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73173267-2	chr14	73172767	73173767	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134083, intron 10 of 14)	(TTTG)n|Simple_repeat|Simple_repeat	30482.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102382998-2	chr12	102382498	102383498	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 8 of 9)	B1_Mur1|SINE|Alu	56815.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-47142597-2	chr7	47142097	47143097	+	807.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-8913.0	NM_013643	19259.0	Mm.4654	NM_013643	ENSMUSG00000030854	Ptpn5	Step	protein tyrosine phosphatase, non-receptor type 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-96103203-2	chr16	96102703	96103703	+	807.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-20775.0	NM_145125	93871.0	Mm.240871	NM_145125	ENSMUSG00000022914	Brwd1	5330419I02Rik|D530019K20Rik|G1-403-16|Wdr9|repro5	bromodomain and WD repeat domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153168859-2	chr2	153168359	153169359	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	intron (NM_133847, intron 1 of 17)	7558.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-62159206-4	chr3	62158721	62159721	+	807.483337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-179556.0	NM_001081295	622434.0	Mm.153974	NM_001081295	ENSMUSG00000036885	Arhgef26	4631416L12Rik|8430436L14Rik|AI303572|AW491953|SGEF	Rho guanine nucleotide exchange factor (GEF) 26	protein-coding	0.0	2.0	0.0	0.0	0.0	0.0
Merged-chr11-97440265-5	chr11	97439779	97440779	+	807.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9881.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-60988308-4	chr14	60987756	60988756	+	807.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013869, intron 5 of 9)	intron (NM_013869, intron 5 of 9)	49731.0	NM_001164155	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25480591-2	chr9	25480091	25481091	+	807.4375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1006.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106146503-4	chr11	106146005	106147005	+	807.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 8 of 15)	intron (NM_011947, intron 8 of 15)	13422.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59804955-4	chr4	59804459	59805459	+	807.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172468)	promoter-TSS (NM_172468)	-691.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66121223-4	chr7	66120726	66121726	+	807.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081163, intron 1 of 2)	intron (NM_001081163, intron 1 of 2)	11711.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-83691707-4	chr9	83691169	83692169	+	807.416626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046066, intron 1 of 2)	intron (NR_046066, intron 1 of 2)	194.0	NR_046066	100039222.0	Mm.405596	NR_046066	ENSMUSG00000100155	Gm2109	-	predicted gene 2109	ncRNA	5.0	0.0	1.0	2.5	2.0	1.0
Merged-chr2-160010746-5	chr2	160010223	160011223	+	807.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-5930.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	14.5	18.0	36.5	13.5	22.0	31.0
Merged-chr4-134702157-4	chr4	134701657	134702657	+	807.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 1 of 11)	intron (NM_207237, intron 1 of 11)	2133.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22228806-3	chr8	22228313	22229313	+	807.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205253, intron 1 of 3)	intron (NM_001205253, intron 1 of 3)	1510.0	NM_001293688	56229.0	Mm.32067	NM_019576	ENSMUSG00000031480	Thsd1	4833423O18Rik|Tmtsp	thrombospondin, type I, domain 1	protein-coding	4.0	3.0	1.5	0.0	0.0	1.0
Merged-chr1-91758848-3	chr1	91758341	91759341	+	807.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42620.0	NM_007855	13345.0	Mm.9474	NM_007855	ENSMUSG00000007805	Twist2	Dermo1|bHLHa39	twist basic helix-loop-helix transcription factor 2	protein-coding	1.0	2.0	4.5	0.5	1.5	8.5
Merged-chr8-45416104-4	chr8	45415591	45416591	+	807.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30D2_MM|LTR|ERV1	-5472.0	NM_126166	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98814085-4	chr11	98813585	98814585	+	807.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138660, intron 3 of 13)	HAL1M8|LINE|L1	-3996.0	NR_033551	100037262.0	Mm.442062	NR_033551	ENSMUSG00000075576	Gm12359	-	predicted gene 12359	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8387249-6	chr10	8386855	8387855	+	807.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 2 of 7)	intron (NM_177387, intron 2 of 7)	131470.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128941435-3	chr8	128940937	128941937	+	807.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	124055.0	NM_029061	74703.0	Mm.196017	NM_029061	ENSMUSG00000025808	Ccdc7a	4930517G15Rik|4930540C21Rik|Biot2|Ccdc7	coiled-coil domain containing 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165663237-2	chr1	165662737	165663737	+	807.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 2 of 5)	intron (NM_001038846, intron 2 of 5)	-28696.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4568142-4	chr16	4567648	4568648	+	807.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8428.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19328854-2	chr7	19328354	19329354	+	807.299988	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-16217.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118236153-2	chr11	118235692	118236692	+	807.283325	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	B1_Mus2|SINE|Alu	12400.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-20003089-3	chr3	20002625	20003625	+	807.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 15 of 16)	intron (NM_080634, intron 15 of 16)	32185.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108442519-3	chr3	108442028	108443028	+	807.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011319, intron 1 of 11)	PB1D11|SINE|Alu	2731.0	NM_011319	20226.0	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-37143171-3	chr6	37142679	37143679	+	807.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 2 of 32)	intron (NM_001347104, intron 2 of 32)	156797.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66230142-3	chr14	66229655	66230655	+	807.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-16331.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	13.5	20.5	27.5	12.0	22.0	26.5
Merged-chr1-88284182-6	chr1	88283716	88284716	+	807.273804	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6637.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40343202-3	chr19	40342705	40343705	+	807.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034963, intron 12 of 22)	Tigger16a|DNA|TcMar-Tigger	59105.0	NM_001034964	20411.0	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102419067-5	chr12	102418494	102419494	+	807.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 2 of 13)	RLTR25B|LTR|ERVK	20819.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	22.5	35.0	27.0	36.0	39.5	40.0
Merged-chr4-154945315-2	chr4	154944821	154945821	+	807.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15602.0	NM_010419	15208.0	Mm.137268	NM_010419	ENSMUSG00000048001	Hes5	bHLHb38	hes family bHLH transcription factor 5	protein-coding	0.0	10.0	0.0	5.0	0.0	1.0
Merged-chr3-105931315-4	chr3	105930826	105931826	+	807.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033780, intron 1 of 5)	intron (NM_001033780, intron 1 of 5)	1338.0	NM_001033780	433638.0	Mm.239081	NM_001033780	ENSMUSG00000074342	I830077J02Rik	-	RIKEN cDNA I830077J02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26351641-2	chr2	26351141	26352141	+	807.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001037747)	TTS (NM_001037747)	469.0	NM_026828	52838.0	Mm.31239	NM_026828	ENSMUSG00000075467	Dnlz	1110034G11Rik|D2Bwg1335e|HEP1	DNL-type zinc finger	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-46106396-6	chr9	46105873	46106873	+	807.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	93553.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65961741-3	chr17	65961236	65962236	+	807.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10549.0	NM_023053	65960.0	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-26604181-3	chr19	26603677	26604677	+	807.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011416)	promoter-TSS (NM_011416)	-983.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38212358-3	chr18	38211869	38212869	+	807.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2607.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134263583-3	chr6	134263134	134264134	+	807.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 8 of 8)	intron (NM_001303102, intron 8 of 8)	-132695.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	2.0	13.0	7.0	19.0	19.0	7.5
Merged-chr6-129514412-3	chr6	129513913	129514913	+	807.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081186, intron 2 of 4)	intron (NM_001081186, intron 2 of 4)	1856.0	NM_001081186	330428.0	Mm.44237	NM_001081186	ENSMUSG00000030160	Tmem52b	D630042F21Rik	transmembrane protein 52B	protein-coding	7.5	5.0	0.0	0.0	0.5	2.0
Merged-chr5-150519653-3	chr5	150519110	150520110	+	807.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1451.0	NM_001159693	545824.0	Mm.380068	NM_001159693	ENSMUSG00000056586	Zar1l	XM_359419	zygote arrest 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-8370474-4	chr18	8370005	8371005	+	807.195862	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	500792.0	NM_001360956	225131.0	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	0.0	4.0	0.0	0.0	0.0	0.0
Merged-chr8-105453459-4	chr8	105452983	105453983	+	807.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033371, intron 6 of 10)	intron (NM_001033371, intron 6 of 10)	17939.0	NM_026481	67971.0	Mm.29358	NM_026481	ENSMUSG00000014846	Tppp3	2700055K07Rik|CGI-38|Ceacam9|mmCGM8	tubulin polymerization-promoting protein family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31104473-4	chr3	31104152	31105152	+	807.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039090, intron 2 of 6)	B1_Mus1|SINE|Alu	9594.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67290184-4	chr10	67289683	67290683	+	807.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-4902.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-10546138-4	chr14	10545641	10546641	+	807.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 4 of 9)	intron (NM_001360141, intron 4 of 9)	-92683.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30630611-2	chr14	30630111	30631111	+	807.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4403.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-123019873-3	chr7	123019367	123020367	+	807.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	49303.0	NM_175023	19647.0	Mm.4480	NM_011247	ENSMUSG00000030779	Rbbp6	4933422O15Rik|AI316869|BB233631|C030034J04Rik|C77662|P2P-R|PACT	retinoblastoma binding protein 6, ubiquitin ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88519452-4	chr5	88518952	88519952	+	807.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_152839)	TTS (NM_152839)	8445.0	NM_152839	16069.0	Mm.1192	NM_152839	ENSMUSG00000067149	Jchain	9530090F24Rik|AI323815|Igj|Jch	immunoglobulin joining chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-42387882-3	chr17	42387373	42388373	+	807.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355270, intron 2 of 2)	URR1A|DNA|hAT-Charlie	71273.0	NM_001355270	627626.0	Mm.390999	NM_028474	ENSMUSG00000042256	Ptchd4	3110082D06Rik|Gm321	patched domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38404387-3	chr16	38403878	38404878	+	807.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134102, intron 8 of 10)	intron (NM_134102, intron 8 of 10)	28767.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80724988-3	chr12	80724526	80725526	+	807.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177503)	TTS (NM_001177503)	32425.0	NM_001177503	217682.0	Mm.154541	NM_001177503	ENSMUSG00000066438	Plekhd1	3830431G21Rik	pleckstrin homology domain containing, family D (with coiled-coil domains) member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-59465350-3	chr1	59464853	59465853	+	807.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16794.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	0.5	1.5	1.0	0.0	2.0	8.0
Merged-chr1-9848370-3	chr1	9847880	9848880	+	807.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037759)	promoter-TSS (NM_001037759)	99.0	NM_001037759	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr13-93305315-2	chr13	93304815	93305815	+	807.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_147176, intron 1 of 9)	intron (NM_147176, intron 1 of 9)	1558.0	NM_011982	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	0.0	0.5	6.0	2.5	5.0	2.5
Merged-chr15-74671038-2	chr15	74670538	74671538	+	807.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001276684, exon 1 of 3)	3' UTR (NM_001276684, exon 1 of 3)	1532.0	NM_001276684	11838.0	Mm.491310	NM_018790	ENSMUSG00000022602	Arc	Arc3.1|C86064|arg3.1|mArc	activity regulated cytoskeletal-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50203891-2	chr11	50203391	50204391	+	807.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290769, intron 5 of 7)	intron (NM_001290769, intron 5 of 7)	6929.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53648927-4	chr19	53648428	53649428	+	807.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28378.0	NM_001170847	73713.0	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64603582-2	chr1	64603082	64604082	+	807.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009952, exon 9 of 9)	3' UTR (NM_009952, exon 9 of 9)	13586.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13499064-2	chr10	13498564	13499564	+	807.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-1964.0	NM_001330198	66848.0	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-31148985-4	chr8	31148458	31149458	+	807.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1358.0	NM_144927	234138.0	Mm.349800	NM_144927	ENSMUSG00000031577	Tti2	-	TELO2 interacting protein 2	protein-coding	32.5	65.0	82.0	27.0	82.0	56.5
Merged-chr3-105041752-2	chr3	105041252	105042252	+	807.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 1 of 5)	intron (NM_030249, intron 1 of 5)	11201.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95510181-4	chr10	95509686	95510686	+	807.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-4976.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36019068-3	chr18	36018567	36019567	+	807.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167891, intron 9 of 9)	intron (NM_001167891, intron 9 of 9)	54237.0	NR_110349	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98272707-3	chr12	98272219	98273219	+	807.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008152, intron 1 of 1)	L1ME3A|LINE|L1	4084.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79125886-3	chr11	79125367	79126367	+	807.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	20606.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67825458-4	chr18	67824951	67825951	+	807.104187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027556, intron 14 of 45)	MIRb|SINE|MIR	25344.0	NM_027556	70799.0	Mm.30857	NM_027556	ENSMUSG00000024542	Cep192	4631422C13Rik|D430014P18Rik	centrosomal protein 192	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66108309-6	chr7	66107904	66108904	+	807.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1111.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40680586-4	chr4	40680091	40681091	+	807.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22325.0	NM_025545	66408.0	Mm.430710	NM_025545	ENSMUSG00000028411	Aptx	2410016G21Rik|AA388047|FHA-HIT	aprataxin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-107950830-4	chr5	107950321	107951321	+	807.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	intron (NM_026062, intron 1 of 4)	36256.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	16.5	5.0	8.5	1.0	3.5	7.0
Merged-chr13-112186591-3	chr13	112186089	112187089	+	807.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-101862.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-61181288-3	chr1	61180790	61181790	+	807.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-197142.0	NR_040483	77341.0	Mm.402964	NR_040483	ENSMUSG00000085447	9530026F06Rik	-	RIKEN cDNA 9530026F06 gene	ncRNA	0.0	3.5	3.5	0.0	2.0	6.0
Merged-chr13-6241201-3	chr13	6240672	6241672	+	807.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-306985.0	NM_145131	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77967271-4	chr10	77966761	77967761	+	807.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 2 of 33)	intron (NM_138301, intron 2 of 33)	2611.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153529040-13	chr2	153528406	153529406	+	807.0448610000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134300, intron 1 of 10)	CpG	1065.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0.5	2.0	1.5	0.5	1.0	2.5
Merged-chr12-85993101-3	chr12	85992607	85993607	+	807.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	85934.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-137611347-4	chr3	137610845	137611845	+	807.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12327.0	NM_030143	73284.0	Mm.250841	NM_030143	ENSMUSG00000046818	Ddit4l	1700037B15Rik|1700108M02Rik|REDD2|RTP801L|Smhs1	DNA-damage-inducible transcript 4-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-123091972-4	chr10	123091484	123092484	+	807.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15479.0	NM_001163025	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	2.0	9.5	1.0	0.0	0.0	5.0
Merged-chr8-122495811-2	chr8	122495311	122496311	+	807.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357349, exon 20 of 51)	exon (NM_001357349, exon 20 of 51)	19668.0	NR_152823	66965.0	Mm.482288	NM_153775	ENSMUSG00000049482	Ctu2	2310061F22Rik|C16orf84|Ncs2	cytosolic thiouridylase subunit 2	protein-coding	2.5	0.0	0.0	2.5	0.0	0.0
Merged-chr7-80861615-2	chr7	80861115	80862115	+	807.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009553)	promoter-TSS (NM_009553)	-493.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86495677-2	chr6	86495177	86496177	+	807.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7450.0	NR_040292	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31165727-2	chr2	31165227	31166227	+	807.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178760, intron 1 of 17)	intron (NM_178760, intron 1 of 17)	13411.0	NM_178760	277463.0	Mm.236074	NM_178760	ENSMUSG00000000194	Gpr107	9930033D15Rik|AI790205|C530034M11|mKIAA1624	G protein-coupled receptor 107	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81549841-2	chr10	81549341	81550341	+	807.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-4795.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-100029833-2	chr10	100029333	100030333	+	807.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347156, intron 1 of 8)	intron (NM_001347156, intron 1 of 8)	14012.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118218899-2	chr14	118218399	118219399	+	807.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17333.0	NR_131969	105245869.0	Mm.460408	NR_131969	ENSMUSG00000090534	LOC105245869	-	uncharacterized LOC105245869	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71311729-2	chr8	71311268	71312268	+	807.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	MT2B|LTR|ERVL	39054.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	10.5	3.0	13.0	13.5	28.0	8.0
Merged-chr13-55022176-2	chr13	55021676	55022676	+	807.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001206392)	promoter-TSS (NM_001206392)	-791.0	NM_001033245	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80174195-2	chr10	80173695	80174695	+	807.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027207, intron 1 of 2)	intron (NM_027207, intron 1 of 2)	1251.0	NM_027207	69770.0	Mm.302754	NM_027207	ENSMUSG00000035595	1600002K03Rik	-	RIKEN cDNA 1600002K03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-28412704-2	chr15	28412204	28413204	+	807.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133365, intron 65 of 78)	intron (NM_133365, intron 65 of 78)	208938.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30431964-4	chr7	30431456	30432456	+	807.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER91B|DNA|hAT-Tip100	8681.0	NM_172142	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	11.5	16.5	13.5	15.0	28.0	20.0
Merged-chr15-103332199-2	chr15	103331699	103332699	+	807.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356627, intron 2 of 7)	intron (NM_001356627, intron 2 of 7)	2139.0	NM_001356627	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21413648-2	chr5	21413148	21414148	+	807.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 1 of 18)	MIRb|SINE|MIR	11029.0	NM_029195	75172.0	Mm.426695	NM_029195	ENSMUSG00000064280	Ccdc146	4930528G09Rik|mKIAA1505	coiled-coil domain containing 146	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116818915-3	chr6	116818414	116819414	+	807.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102156.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108472009-1	chr6	108471509	108472509	+	807.0	f0_balb.idr	intron (NM_010585, intron 45 of 61)	intron (NM_010585, intron 45 of 61)	-17734.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.0	5.5	5.5	0.0	2.0	0.5
Merged-chr17-45750477-2	chr17	45749977	45750977	+	807.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	15971.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	0.0	0.0	10.0	0.0	2.0	0.0
Merged-chr19-29505780-3	chr19	29505271	29506271	+	807.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015567, intron 3 of 3)	ORR1D2|LTR|ERVL-MaLR	16216.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-51679942-1	chr12	51679442	51680442	+	807.0	f0_balb.idr	intron (NM_001172098, intron 1 of 15)	L1M4|LINE|L1	-11024.0	NM_001329699	11782.0	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-140703574-2	chr4	140703079	140704079	+	807.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173867, intron 2 of 12)	RMER10A|LTR|ERVL	2106.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	7.0	7.5	12.0	0.0	11.5	13.5
Merged-chr17-87303048-2	chr17	87302548	87303548	+	807.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 3 of 19)	B3|SINE|B2	20162.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6412823-1	chr11	6412323	6413323	+	807.0	f1_c57bl6.idr	Intergenic	Intergenic	-3047.0	NM_008907	268373.0	Mm.5246	NM_008907	ENSMUSG00000071866	Ppia	2700098C05|Cphn|CyP-18|CypA	peptidylprolyl isomerase A	protein-coding	0.0	0.0	0.0	0.0	7.0	0.0
Merged-chr6-38964162-2	chr6	38963662	38964662	+	807.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	L1MB4|LINE|L1	45176.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166444569-2	chr2	166444069	166445069	+	807.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2882.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96565533-2	chr15	96565033	96566033	+	807.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76429.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27643356-4	chr17	27642846	27643846	+	807.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8104.0	NM_025963	67097.0	Mm.275810	NM_025963	ENSMUSG00000052146	Rps10	2210402A09Rik	ribosomal protein S10	protein-coding	1.0	0.0	0.0	0.5	2.0	0.0
Merged-chr14-103946594-2	chr14	103946094	103947094	+	807.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80548.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111960637-2	chr10	111960137	111961137	+	807.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-12058.0	NM_178610	52705.0	Mm.34606	NM_178610	ENSMUSG00000063334	Krr1	2610511F02Rik|AI255219|AI428520|D10Ertd773e|Hrb2	KRR1, small subunit (SSU) processome component, homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-68692139-2	chr7	68691639	68692639	+	807.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57099.0	NM_001042592	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-73007348-2	chr6	73006848	73007848	+	807.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48600.0	NM_001190327	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100458344-3	chr15	100458061	100459061	+	807.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10450.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	2.0	4.0	2.0	0.0	2.0	0.5
Merged-chr4-106385470-1	chr4	106384970	106385970	+	807.0	f0_balb.idr	exon (NM_183225, exon 32 of 68)	exon (NM_183225, exon 32 of 68)	69257.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	3.0	3.0	0.5	2.0	0.0	3.5
Merged-chr11-86612050-2	chr11	86611550	86612550	+	807.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 7 of 11)	intron (NM_001356531, intron 7 of 11)	-27892.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-193888200-3	chr1	193887702	193888702	+	807.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	334557.0	NR_040477	74942.0	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55808435-1	chr16	55807935	55808935	+	807.0	f0_balb.idr	Intergenic	Intergenic	13703.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27242306-1	chr17	27241806	27242806	+	807.0	f0_balb.idr	intron (NR_131118, intron 1 of 2)	intron (NR_131118, intron 1 of 2)	5760.0	NR_131118	319720.0	Mm.394996	NR_131118		9630028I04Rik	-	RIKEN cDNA 9630028I04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122636423-2	chr6	122635923	122636923	+	807.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9999.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr10-80918076-5	chr10	80917448	80918448	+	806.985718	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010722, intron 1 of 11)	CpG	297.0	NM_010722	16907.0	Mm.7362	NM_010722	ENSMUSG00000062075	Lmnb2	-	lamin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-62604429-3	chr17	62603889	62604889	+	806.983337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_207654, exon 5 of 5)	3' UTR (NM_207654, exon 5 of 5)	276928.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10502763-4	chr19	10502281	10503281	+	806.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025333, exon 4 of 4)	3' UTR (NM_025333, exon 4 of 4)	-19884.0	NM_133689	67752.0	Mm.25939	NM_133689	ENSMUSG00000035179	Ppp1r32	4930579J09Rik|AU015816|IIIG9|IIIG9L|IIIG9S	protein phosphatase 1, regulatory subunit 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47687783-3	chr9	47687257	47688257	+	806.955566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	130451.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	4.5	21.0	7.5	28.0	23.5	8.5
Merged-chr5-123245670-3	chr5	123245163	123246163	+	806.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026000, intron 4 of 5)	intron (NM_026000, intron 4 of 5)	17473.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	0.0	2.5	1.0	0.0	0.0	0.0
Merged-chr17-35237219-2	chr17	35236690	35237690	+	806.916626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347351, exon 3 of 4)	exon (NM_001347351, exon 3 of 4)	594.0	NM_023179	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	2.0	0.0	7.0	1.5	8.0	2.5
Merged-chr15-8577793-3	chr15	8577265	8578265	+	806.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	133042.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33557748-3	chr17	33557254	33558254	+	806.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053214, intron 1 of 27)	intron (NM_053214, intron 1 of 27)	2047.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	3.5	19.5	15.5	3.5	24.5	9.0
Merged-chr10-16995185-3	chr10	16994677	16995677	+	806.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038020, intron 1 of 8)	intron (NR_038020, intron 1 of 8)	100605.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140664022-2	chr5	140663522	140664522	+	806.875	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028833, exon 23 of 23)	3' UTR (NM_028833, exon 23 of 23)	-14991.0	NM_175274	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87907463-4	chr3	87907030	87908030	+	806.8690190000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331051, intron 1 of 6)	intron (NM_001331051, intron 1 of 6)	680.0	NM_001331052	15191.0	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	18.5	27.5	14.5	13.5	37.0	26.0
Merged-chr5-122103273-4	chr5	122102749	122103749	+	806.841675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010861, intron 3 of 6)	intron (NM_010861, intron 3 of 6)	2298.0	NM_010861	17906.0	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	0.0	0.0	0.0	0.0	1.5	1.0
Merged-chr8-83694720-2	chr8	83694203	83695203	+	806.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199593)	promoter-TSS (NM_001199593)	-642.0	NM_001199593	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	26.0	38.5	27.0	16.5	45.5	46.5
Merged-chr5-32858133-2	chr5	32857633	32858633	+	806.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR42-int|LTR|ERVK	-3903.0	NM_194340	215476.0	Mm.248721	NM_194340	ENSMUSG00000054280	Prr14l	6030436E02Rik|C330019G07Rik|Prl14l	proline rich 14-like	protein-coding	0.0	1.5	2.5	0.0	3.0	2.5
Merged-chr2-128751696-2	chr2	128751196	128752196	+	806.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 5 of 18)	URR1B|DNA|hAT-Charlie	52781.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	6.5	17.0	18.0	2.5	10.5	8.5
Merged-chr9-9684228-4	chr9	9683729	9684729	+	806.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033359, intron 17 of 20)	intron (NM_001033359, intron 17 of 20)	-210202.0	NR_105745	102466147.0		NR_105745	ENSMUSG00000098408	Mir6237	Gm27411|mmu-mir-6237	microRNA 6237	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116648698-3	chr11	116648173	116649173	+	806.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030206, intron 3 of 3)	intron (NM_030206, intron 3 of 3)	5640.0	NM_030206	114886.0	Mm.34598	NM_030206	ENSMUSG00000020810	Cygb	3110001K20Rik|HGb|Staap	cytoglobin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102458530-3	chr15	102458054	102459054	+	806.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170911)	promoter-TSS (NM_001170911)	-616.0	NM_001170911	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-80505057-2	chr1	80504557	80505557	+	806.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 55 of 55)	intron (NM_175291, intron 55 of 55)	59125.0	NR_040460	72208.0	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan	RIKEN cDNA 1700016L21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24398945-2	chr7	24398445	24399445	+	806.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028047)	promoter-TSS (NM_028047)	-683.0	NM_028047	71997.0	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	5.5	32.0	22.0	6.5	14.0	19.0
Merged-chr7-127573777-2	chr7	127573277	127574277	+	806.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360741, intron 1 of 8)	intron (NM_001360741, intron 1 of 8)	429.0	NM_026888	68961.0	Mm.274473	NM_026888	ENSMUSG00000030815	Phkg2	1500017I02Rik	phosphorylase kinase, gamma 2 (testis)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123610083-2	chr5	123609583	123610583	+	806.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359224, intron 15 of 18)	intron (NM_001359224, intron 15 of 18)	-37068.0	NM_029929	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	0.0	1.5	0.0	0.0	1.5	0.0
Merged-chr2-25072381-4	chr2	25071881	25072881	+	806.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7942.0	NM_028093	72090.0	Mm.33403	NM_028093	ENSMUSG00000036813	Entpd8	-	ectonucleoside triphosphate diphosphohydrolase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-58832947-4	chr6	58832493	58833493	+	806.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028705)	promoter-TSS (NM_028705)	-707.0	NM_028705	73998.0	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133199441-2	chr4	133198930	133199930	+	806.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3775.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	2.5	7.0	11.5	4.0	7.0	3.5
Merged-chr6-115491445-4	chr6	115490946	115491946	+	806.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-53258.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94774131-3	chr16	94773639	94774639	+	806.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025584, intron 3 of 4)	intron (NM_001025584, intron 3 of 4)	82551.0	NM_001025590	16522.0	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-98189113-4	chr4	98188603	98189603	+	806.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	194162.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-138198322-4	chr3	138197803	138198803	+	806.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11590.0	NM_001163386	67741.0	Mm.383221	NM_001163385	ENSMUSG00000012042	4930579F01Rik	-	RIKEN cDNA 4930579F01 gene	protein-coding	2.0	2.0	1.5	0.0	0.0	1.0
Merged-chr9-40638609-5	chr9	40638131	40639131	+	806.700012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47333.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	13.0	26.0	39.5	9.5	19.5	5.0
Merged-chr5-142441776-3	chr5	142441279	142442279	+	806.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 2 of 8)	Tigger7|DNA|TcMar-Tigger	-22152.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66240547-3	chr14	66240046	66241046	+	806.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-26722.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	1.5	3.0	3.0	0.0	12.5	6.5
Merged-chr3-84938161-3	chr3	84937633	84938633	+	806.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177774, intron 3 of 12)	intron (NM_001177774, intron 3 of 12)	-14078.0	NM_080428	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.0	0.5	0.5	0.0	3.0	4.5
Merged-chr13-6639774-3	chr13	6639279	6640279	+	806.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019703, intron 1 of 21)	B1_Mur3|SINE|Alu	8992.0	NM_019703	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30992341-3	chr7	30991833	30992833	+	806.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	10412.0	NM_001242647	76415.0	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9082497-3	chr3	9081989	9082989	+	806.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20525.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-52529945-2	chr18	52529445	52530445	+	806.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010728)	promoter-TSS (NM_010728)	-78.0	NM_001286182	16948.0	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86568859-2	chr11	86568359	86569359	+	806.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	15299.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129256189-2	chr6	129255689	129256689	+	806.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17707.0	NR_040268	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-57837180-5	chr1	57836676	57837676	+	806.6309809999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144882, intron 3 of 13)	intron (NM_144882, intron 3 of 13)	-8395.0	NM_001164566	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	1.0	8.5	7.5	6.5	11.0	10.5
Merged-chr2-27752258-2	chr2	27751758	27752758	+	806.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 5 of 9)	intron (NM_001290481, intron 5 of 9)	41675.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-30508595-4	chr3	30508115	30509115	+	806.625	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361034, intron 1 of 16)	CpG	1060.0	NM_001361034	14013.0	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	1.0	0.0	1.5	0.0	0.5	1.5
Merged-chr3-84654294-4	chr3	84653805	84654805	+	806.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11887.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140703658-2	chr5	140703158	140704158	+	806.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1280.0	NM_001347517	74239.0	Mm.179704	NM_028833	ENSMUSG00000036555	Iqce	1700028P05Rik|mKIAA1023	IQ motif containing E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76251190-4	chr15	76250644	76251644	+	806.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2953.0	NR_105918	102465575.0		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44939516-3	chr13	44939008	44940008	+	806.611145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025772, intron 7 of 9)	RLTR24|LTR|ERV1	62588.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-24633876-3	chr1	24633368	24634368	+	806.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44676.0	NM_026719	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24472608-2	chr17	24472108	24473108	+	806.599976	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001252463)	TTS (NM_001252463)	-1276.0	NM_175682	319259.0	Mm.258355	NM_175682	ENSMUSG00000045744	Bricd5	9930021D14Rik	BRICHOS domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3238016-5	chr12	3237541	3238541	+	806.599976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015551, exon 4 of 7)	non-coding (NR_015551, exon 4 of 7)	2250.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49190810-3	chr7	49190327	49191327	+	806.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	-28669.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95720029-2	chr13	95719522	95720522	+	806.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 11 of 35)	intron (NM_027711, intron 11 of 35)	23102.0	NM_010170	14064.0	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	11.0	16.0	10.5	9.0	7.5	9.5
Merged-chr11-120346582-4	chr11	120346084	120347084	+	806.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_105900)	TTS (NR_105900)	829.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45305510-4	chr7	45305025	45306025	+	806.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175130, intron 20 of 24)	intron (NM_175130, intron 20 of 24)	-19433.0	NR_110499	100040970.0	Mm.289810	NR_110499	ENSMUSG00000046721	Rpl14-ps1	Gm9811	ribosomal protein L14, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-104200013-4	chr7	104199519	104200519	+	806.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9814.0	NM_147055	259057.0	Mm.223438	NM_147055	ENSMUSG00000044899	Olfr649	MOR31-7	olfactory receptor 649	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-56704171-3	chr13	56703684	56704684	+	806.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164042, intron 1 of 6)	intron (NM_001164042, intron 1 of 6)	516.0	NM_001164042	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-101800595-3	chr3	101800107	101801107	+	806.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35616.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	2.0	7.0	4.5	2.5	0.0	2.0
Merged-chr18-61647281-4	chr18	61646754	61647754	+	806.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_029557)	TTS (NR_029557)	640.0	NR_029557	387163.0		NR_029557	ENSMUSG00000065592	Mir145a	Mir145|Mirn145|mir-145a|mmu-mir-145|mmu-mir-145a	microRNA 145a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133250844-4	chr4	133250296	133251296	+	806.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016693, exon 22 of 29)	exon (NM_016693, exon 22 of 29)	9978.0	NM_016693	53608.0	Mm.36640	NM_016693	ENSMUSG00000028862	Map3k6	Ask2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding	3.5	0.5	0.0	0.0	2.5	0.5
Merged-chr8-83747063-3	chr8	83746502	83747502	+	806.533325	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5691.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	76.0	181.5	134.0	50.0	201.5	110.0
Merged-chr11-54390617-2	chr11	54390117	54391117	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029105, intron 5 of 13)	intron (NM_029105, intron 5 of 13)	19965.0	NM_029105	74847.0	Mm.486538	NM_029105	ENSMUSG00000020332	Meikin	4930404A10Rik	meiotic kinetochore factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155811930-3	chr2	155811430	155812430	+	806.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010808, intron 6 of 8)	intron (NM_010808, intron 6 of 8)	7273.0	NR_015528	613262.0	Mm.330707	NR_015528	ENSMUSG00000074649	BC029722	-	cDNA sequence BC029722	ncRNA	0.0	4.0	0.5	7.5	3.5	0.5
Merged-chr6-27088195-2	chr6	27087695	27088695	+	806.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	848555.0	NR_030420	735266.0		NR_030420	ENSMUSG00000076067	Mir592	Mirn592|mir-592|mmu-mir-592	microRNA 592	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115555378-2	chr5	115554934	115555934	+	806.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133915, exon 12 of 12)	3' UTR (NM_133915, exon 12 of 12)	-4033.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	9.5	8.0	4.5	1.5	1.0	10.0
Merged-chr6-54815563-2	chr6	54815063	54816063	+	806.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1353.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57524624-3	chr9	57524128	57525128	+	806.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007747, intron 1 of 4)	intron (NM_007747, intron 1 of 4)	3396.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-46108328-1	chr10	46107828	46108828	+	806.5	f0_balb.idr	Intergenic	MER5A1|DNA|hAT-Charlie	-136420.0	NR_028274	100302593.0		NR_028274	ENSMUSG00000095118	Snord14d	Gm23710	small nucleolar RNA, C/D box 14D	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30153712-2	chr5	30153212	30154212	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178878, intron 1 of 19)	B1_Mus2|SINE|Alu	1268.0	NM_178878	97212.0	Mm.200497	NM_178878	ENSMUSG00000025745	Hadha	C77020|Mtpa	hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126769844-2	chr7	126769344	126770344	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024228, intron 7 of 9)	intron (NM_024228, intron 7 of 9)	3430.0	NM_024228	68616.0	Mm.246881	NM_024228	ENSMUSG00000030703	Gdpd3	1110015E22Rik	glycerophosphodiester phosphodiesterase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27558235-2	chr17	27557735	27558735	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039356, intron 2 of 5)	intron (NM_001039356, intron 2 of 5)	1582.0	NM_001166477	111241.0	Mm.426212	NM_001166476	ENSMUSG00000078249	Hmga1b	Hmga1-rs1|Hmgi-rs1	high mobility group AT-hook 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-70989859-2	chr2	70989359	70990359	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 3 of 9)	intron (NM_145524, intron 3 of 9)	28515.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-9388942-2	chr14	9388442	9389442	+	806.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-495153.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182284054-2	chr1	182283554	182284554	+	806.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1253.0	NM_007853	13244.0	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18418744-2	chr16	18418244	18419244	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007744, intron 1 of 4)	B4A|SINE|B4	-5250.0	NM_001111063	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117341957-2	chr8	117341457	117342457	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-7213.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118102392-2	chr11	118101892	118102892	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167746, intron 21 of 80)	intron (NM_001167746, intron 21 of 80)	26827.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102985820-2	chr15	102985320	102986320	+	806.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4719.0	NM_010466	15426.0	Mm.6167	NM_010466	ENSMUSG00000001657	Hoxc8	D130011F21Rik|Hox-3.1	homeobox C8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34103239-2	chr18	34102739	34103739	+	806.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96033.0	NM_013512	13824.0	Mm.3465	NM_013512	ENSMUSG00000024376	Epb41l4a	Epb4.1l4|Epb4.1l4a|NBL4	erythrocyte membrane protein band 4.1 like 4a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135682446-4	chr1	135681942	135682942	+	806.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-37621.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101981144-2	chr15	101980644	101981644	+	806.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23198.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59006989-2	chr15	59006489	59007489	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	73179.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-28016015-4	chr3	28015523	28016523	+	806.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 1 of 25)	intron (NM_008875, intron 1 of 25)	31852.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136344502-1	chr1	136344002	136345002	+	806.5	f0_balb.idr	intron (NM_001347109, intron 1 of 17)	intron (NM_001347109, intron 1 of 17)	1602.0	NM_001347109	67886.0	Mm.144143	NM_001081360	ENSMUSG00000041570	Camsap2	1600013L13Rik|4930541M15Rik|Camsap1l1|mKIAA1078	calmodulin regulated spectrin-associated protein family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108711224-2	chr8	108710724	108711724	+	806.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3420.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106322700-4	chr9	106322276	106323276	+	806.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 9 of 10)	intron (NM_027354, intron 9 of 10)	41715.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	11.5	19.5	19.5	7.0	30.5	15.0
Merged-chr4-64497908-4	chr4	64497412	64498412	+	806.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	SYNREP_MM|Satellite|Satellite	-221309.0	NR_151546	102633436.0	Mm.411637	NR_151546		Gm11217	-	predicted gene 11217	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77563851-2	chr10	77563351	77564351	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 14 of 15)	intron (NM_008404, intron 14 of 15)	-17804.0	NM_145925	108705.0	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540|PBF	pituitary tumor-transforming 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81836204-2	chr7	81835704	81836704	+	806.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR1B|LTR|ERV1	-6773.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76559090-2	chr15	76558590	76559590	+	806.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17269.0	NM_172960	268822.0	Mm.181624	NM_172960	ENSMUSG00000022550	Adck5	A230108P17	aarF domain containing kinase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88762945-2	chr5	88762445	88763445	+	806.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2068.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-118848432-2	chr12	118847932	118848932	+	806.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_177082, exon 3 of 3)	exon (NM_177082, exon 3 of 3)	2103.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-5258903-2	chr16	5258403	5259403	+	806.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2947.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-99063474-2	chr11	99062974	99063974	+	806.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	22230.0	NM_010517	16010.0	Mm.233799	NM_010517	ENSMUSG00000017493	Igfbp4	AI875747|Deb2|IBP-4|IGFBP-4	insulin-like growth factor binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116099816-2	chr9	116099303	116100303	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 5 of 6)	intron (NM_029575, intron 5 of 6)	75560.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	7.0	13.0	17.0	21.5	45.0	47.5
Merged-chr1-86067462-2	chr1	86066962	86067962	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027357, intron 1 of 24)	intron (NM_027357, intron 1 of 24)	2843.0	NM_027357	70247.0	Mm.280013	NM_027357	ENSMUSG00000026229	Psmd1	2410026J11Rik|P112|S1	proteasome (prosome, macropain) 26S subunit, non-ATPase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44669084-3	chr10	44668563	44669563	+	806.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-210315.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82991167-2	chr11	82990667	82991667	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172796, intron 1 of 4)	intron (NM_172796, intron 1 of 4)	663.0	NM_172796	237886.0	Mm.270253	NM_172796	ENSMUSG00000069793	Slfn9	9830137M10Rik	schlafen 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77963408-2	chr10	77962910	77963910	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 4 of 33)	B2_Mm2|SINE|B2	6462.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-30596220-2	chr3	30595720	30596720	+	806.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029690)	TTS (NM_029690)	3650.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84869169-2	chr3	84868669	84869669	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177773, intron 3 of 13)	intron (NM_001177773, intron 3 of 13)	5024.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.0	0.0	6.0	1.0	13.0	4.0
Merged-chr6-54944750-2	chr6	54944250	54945250	+	806.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172729, exon 4 of 12)	exon (NM_172729, exon 4 of 12)	26911.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-37975372-2	chr3	37974872	37975872	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040559, intron 2 of 3)	intron (NR_040559, intron 2 of 3)	76559.0	NR_040559	626410.0	Mm.389417	NR_040559	ENSMUSG00000106461	Gm20755	-	predicted gene, 20755	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80020171-2	chr10	80019671	80020671	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027521, intron 1 of 21)	intron (NM_027521, intron 1 of 21)	496.0	NM_027521	70719.0	Mm.243954	NM_027521	ENSMUSG00000035697	Arhgap45	6330406L22Rik|AW539505|Ha-1|Hmha1	Rho GTPase activating protein 45	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-19681705-4	chr4	19681192	19682192	+	806.491089	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_074090, intron 2 of 24)	intron (NR_074090, intron 2 of 24)	27312.0	NM_177327	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87723800-3	chr6	87723300	87724300	+	806.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-7069.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	21.0	34.0	24.5	32.5	67.5	83.0
Merged-chr19-36347545-3	chr19	36347093	36348093	+	806.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31474.0	NM_029508	76073.0	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-91093836-3	chr13	91093348	91094348	+	806.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025770, intron 3 of 7)	intron (NM_025770, intron 3 of 7)	130139.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31942817-3	chr5	31942286	31943286	+	806.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 7 of 11)	intron (NM_144541, intron 7 of 11)	-193686.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.0	0.0	0.5	2.5	0.0	0.0
Merged-chr3-59224931-3	chr3	59224422	59225422	+	806.43335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357010, intron 1 of 3)	intron (NM_001357010, intron 1 of 3)	-14040.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	40.5	49.5	34.5	7.0	44.5	26.0
Merged-chr1-172047152-4	chr1	172046728	172047728	+	806.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10368.0	NM_010916	18071.0	Mm.2474	NM_010916	ENSMUSG00000051251	Nhlh1	Hen1|Nscl|Tal2|bHLHa35	nescient helix loop helix 1	protein-coding	0.0	14.0	1.0	5.5	1.5	3.5
Merged-chr15-58239205-3	chr15	58238659	58239659	+	806.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-24267.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98800561-2	chr12	98800061	98801061	+	806.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081191, intron 35 of 43)	intron (NM_001081191, intron 35 of 43)	29539.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-61230592-4	chr19	61229983	61230983	+	806.392822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur1|LINE|L1	-2065.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	3.0	19.5	2.0	2.0	16.5	5.5
Merged-chr7-16043005-4	chr7	16042468	16043468	+	806.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28877.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59786868-4	chr4	59786373	59787373	+	806.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3018.0	NM_001013577	66209.0	Mm.51988	NM_001013577	ENSMUSG00000038544	Inip	1110054O05Rik|2610312O17Rik|AA399876|Ssbip1	INTS3 and NABP interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-103387587-4	chr5	103387113	103388113	+	806.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37579.0	NM_011204	19249.0	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63933230-3	chr9	63932723	63933723	+	806.366699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88836.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81318211-2	chr10	81317711	81318711	+	806.333374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008844, exon 18 of 18)	3' UTR (NM_008844, exon 18 of 18)	-2892.0	NM_027381	70312.0	Mm.87628	NM_027381	ENSMUSG00000034889	Cactin	2510012J08Rik	cactin, spliceosome C complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88023482-2	chr3	88022982	88023982	+	806.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_022031, intron 5 of 6)	CpG-9271	4029.0	NM_022031	73940.0	Mm.294467	NM_022031	ENSMUSG00000004894	Hapln2	4930401E20Rik|Bral1	hyaluronan and proteoglycan link protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56270628-2	chr17	56270128	56271128	+	806.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_174989, exon 2 of 2)	exon (NM_174989, exon 2 of 2)	6139.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132371699-2	chr1	132371199	132372199	+	806.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178874, intron 2 of 4)	intron (NM_178874, intron 2 of 4)	-3751.0	NM_001311108	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	3.0	7.5	4.5	3.0	7.5	4.5
Merged-chr2-60172109-2	chr2	60171609	60172609	+	806.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-37827.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27755067-3	chr2	27754557	27755557	+	806.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 7 of 9)	intron (NM_001290481, intron 7 of 9)	44474.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-84442781-3	chr11	84442282	84443282	+	806.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019816, intron 11 of 12)	intron (NM_019816, intron 11 of 12)	70719.0	NM_019816	56321.0	Mm.257482	NM_019816	ENSMUSG00000018697	Aatf	4933415H02Rik|5830465M17Rik|Che-1|Trb	apoptosis antagonizing transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64197191-3	chr15	64196669	64197669	+	806.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 4 of 28)	intron (NM_001276461, intron 4 of 28)	115504.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.0	6.5	0.0	0.0	0.5	4.0
Merged-chr8-77485204-6	chr8	77484692	77485692	+	806.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 1 of 22)	intron (NM_030113, intron 1 of 22)	-31864.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127949078-4	chr3	127948590	127949590	+	806.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040552, intron 4 of 4)	intron (NR_040552, intron 4 of 4)	32919.0	NR_040552	329753.0	Mm.119720	NR_040552	ENSMUSG00000104763	9830132P13Rik	9830132P13	RIKEN cDNA 9830132P13 gene	ncRNA	0.0	5.5	0.5	2.0	0.0	2.5
Merged-chr8-26768351-3	chr8	26767850	26768850	+	806.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56073.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62492301-2	chr10	62491801	62492801	+	806.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5496.0	NM_001358543	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75784045-2	chr7	75783545	75784545	+	806.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64293.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr8-4679775-2	chr8	4679275	4680275	+	806.299988	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TATATG)n|Simple_repeat|Simple_repeat	66605.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83695971-4	chr17	83695474	83696474	+	806.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-10189.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89360486-3	chr3	89359997	89360997	+	806.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029974, intron 3 of 15)	L2|LINE|L2	4756.0	NM_029974	77772.0	Mm.164013	NM_029974	ENSMUSG00000042672	Dcst1	A330106H01Rik	DC-STAMP domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137683914-3	chr5	137683458	137684458	+	806.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303271, intron 1 of 12)	ID_B1|SINE|B4	795.0	NM_001303271	231801.0	Mm.260869	NM_145566	ENSMUSG00000029722	Agfg2	A630095P14Rik|Hrbl|RAB-R|RABR	ArfGAP with FG repeats 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75221545-5	chr10	75220995	75221995	+	806.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145826, intron 1 of 18)	B1F1|SINE|Alu	9105.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-63047203-2	chr6	63046703	63047703	+	806.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-209654.0	NM_008167	14804.0	Mm.439651	NM_008167	ENSMUSG00000071424	Grid2	B230104L07Rik|GluD2|GluRdelta2|Lc|Lc<J>|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr	glutamate receptor, ionotropic, delta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-6152950-4	chr7	6152462	6153462	+	806.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013012, intron 1 of 2)	intron (NM_001013012, intron 1 of 2)	3009.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98807082-2	chr15	98806582	98807582	+	806.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001013741, exon 2 of 2)	exon (NM_001013741, exon 2 of 2)	843.0	NM_001013741	13199.0	Mm.390810	NM_001013741	ENSMUSG00000059213	Ddn	Gm748	dendrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29101022-3	chr2	29100533	29101533	+	806.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR25A|LTR|ERVK	-23959.0	NM_198033	269254.0	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121891646-3	chr3	121891100	121892100	+	806.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61629.0	NM_172525	214137.0	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24572155-4	chr2	24571644	24572644	+	806.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96545.0	NM_011040	18510.0	Mm.2533	NM_011040	ENSMUSG00000026976	Pax8	Pax-8	paired box 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-77315452-4	chr16	77314953	77315953	+	806.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	-13875.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62448247-2	chr10	62447747	62448747	+	806.166687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027926)	promoter-TSS (NR_027926)	-913.0	NR_027926	74706.0	Mm.402550	NR_027926	ENSMUSG00000097129	4930507D05Rik	-	RIKEN cDNA 4930507D05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141470283-2	chr7	141469783	141470783	+	806.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111049, intron 6 of 7)	intron (NM_001111049, intron 6 of 7)	1494.0	NM_001111050	12476.0	Mm.30246	NM_009842	ENSMUSG00000025510	Cd151	PETA-3|SFA-1|Tspan24	CD151 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128710142-2	chr2	128709643	128710643	+	806.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	11228.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	43.5	188.5	108.0	50.0	148.5	122.0
Merged-chr11-114894660-2	chr11	114894160	114895160	+	806.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001359812, exon 4 of 8)	exon (NM_001359812, exon 4 of 8)	4619.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-153308597-2	chr3	153308097	153309097	+	806.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 3 of 4)	intron (NM_011372, intron 3 of 4)	-9948.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36745205-3	chr16	36744702	36745702	+	806.144409	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR40|LTR|ERVK	39760.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146498808-4	chr3	146498230	146499230	+	806.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316756, intron 1 of 14)	B3A|SINE|B2	1023.0	NM_001316756	70951.0	Mm.383235	NM_027617	ENSMUSG00000028188	Spata1	4921536I21Rik|AV266943|SP-2	spermatogenesis associated 1	protein-coding	22.5	67.5	37.5	23.0	84.0	48.5
Merged-chr9-108847709-4	chr9	108847173	108848173	+	806.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001359573, exon 34 of 36)	exon (NM_001359573, exon 34 of 36)	-6370.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	0.0	3.0	2.5	0.0	3.0	2.5
Merged-chr11-45718733-3	chr11	45718221	45719221	+	806.122253	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89362.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	6.0	4.5	3.5	4.0	2.5	5.5
Merged-chr6-119502126-3	chr6	119501591	119502591	+	806.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009525, intron 1 of 4)	intron (NM_009525, intron 1 of 4)	22423.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-131354611-3	chr6	131354103	131355103	+	806.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33847.0	NM_139117	56449.0	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	2.0	1.5	6.0	2.0	4.0	0.0
Merged-chr11-82078234-4	chr11	82077738	82078738	+	806.104187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20406.0	NM_011330	20292.0	Mm.4686	NM_011330	ENSMUSG00000020676	Ccl11	Scya11|eotaxin	chemokine (C-C motif) ligand 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-124675295-4	chr4	124674844	124675844	+	806.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	17698.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-15102379-3	chr15	15101881	15102881	+	806.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1675720.0	NM_009869	12565.0	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63557923-3	chr4	63557433	63558433	+	806.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356354)	promoter-TSS (NM_001356354)	-830.0	NM_001356355	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-104422439-4	chr2	104421917	104422917	+	806.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6523.0	NR_035432	100316678.0		NR_035432	ENSMUSG00000084516	Mir1902	Mirn1902|mmu-mir-1902	microRNA 1902	ncRNA	0.0	0.0	0.0	3.0	0.0	0.0
Merged-chr4-101646069-2	chr4	101645569	101646569	+	806.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1714.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	0.0	0.0	1.0	1.5	1.0	0.0
Merged-chr10-67186937-2	chr10	67186437	67187437	+	806.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001242396, intron 1 of 24)	intron (NM_001242396, intron 1 of 24)	1187.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70675385-1	chr8	70674885	70675885	+	806.0	f1_balb.idr	intron (NM_015816, intron 1 of 4)	intron (NM_015816, intron 1 of 4)	2154.0	NM_015816	50783.0	Mm.248188	NM_015816	ENSMUSG00000031848	Lsm4	-	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	4.5	6.5	7.0	6.5	8.5	7.5
Merged-chr1-59619617-4	chr1	59619124	59620124	+	806.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013771, intron 13 of 19)	ORR1F|LTR|ERVL-MaLR	51210.0	NM_009460	22218.0	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80671056-2	chr10	80670556	80671556	+	806.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021462, intron 5 of 13)	intron (NM_021462, intron 5 of 13)	5237.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100009934-2	chr7	100009434	100010434	+	806.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291320)	promoter-TSS (NM_001291320)	16.0	NM_001291320	69121.0	Mm.285295	NM_133709	ENSMUSG00000030732	Chrdl2	1810022C01Rik|Chl2	chordin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55558737-2	chr14	55558237	55559237	+	806.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1292.0	NR_037572	28199.0	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-86814268-2	chr8	86813768	86814768	+	806.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B3|LTR|ERVL	-68262.0	NM_009172	20437.0	Mm.324553	NM_009172	ENSMUSG00000036840	Siah1a	AA982064|AI853500|Sinh1a	siah E3 ubiquitin protein ligase 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120685011-2	chr8	120684511	120685511	+	806.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16691.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5062870-2	chr2	5062370	5063370	+	806.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356487, intron 1 of 13)	intron (NM_001356487, intron 1 of 13)	1247.0	NM_181848	71648.0	Mm.116942	NM_181848	ENSMUSG00000026672	Optn	4930441O07Rik|FIP2|HYPL|NRP	optineurin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-36442558-2	chr3	36442058	36443058	+	806.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32966.0	NR_105976	102466786.0		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-56241989-2	chr12	56241489	56242489	+	806.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11254.0	NR_045048	100503961.0	Mm.136732	NR_045048	ENSMUSG00000112164	Gm19990	-	predicted gene, 19990	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9488224-2	chr18	9487724	9488724	+	806.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-38070.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147523551-2	chr4	147523051	147524051	+	806.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-29726.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70234240-2	chr11	70233740	70234740	+	806.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029581)	promoter-TSS (NR_029581)	-477.0	NR_030444	751537.0		NR_030444	ENSMUSG00000105220	Mir497	Mir|Mirn497|mir-497a|mmu-mir-497|mmu-mir-497a	microRNA 497	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59203404-2	chr15	59202895	59203895	+	806.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103553.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	0.0	0.0	2.5	0.0	1.5	1.5
Merged-chr9-58955728-3	chr9	58955221	58956221	+	806.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008684, intron 7 of 28)	B3|SINE|B2	80720.0	NM_001042752	18007.0	Mm.42249	NM_008684	ENSMUSG00000032340	Neo1	2610028H22Rik|AI327052|D930014N22Rik|Igdcc2	neogenin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101766217-1	chr13	101765717	101766717	+	806.0	f0_balb.idr	intron (NM_001077495, intron 1 of 15)	intron (NM_001077495, intron 1 of 15)	2000.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-51161343-2	chr6	51160843	51161843	+	806.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108567.0	NR_029719	387166.0		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85106218-1	chr1	85105718	85106718	+	806.0	f1_balb.idr	intron (NM_213615, intron 1 of 6)	intron (NM_213615, intron 1 of 6)	3635.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24903251-1	chr17	24902751	24903751	+	806.0	f1_c57bl6.idr	intron (NM_013931, intron 18 of 31)	intron (NM_013931, intron 18 of 31)	6751.0	NM_019730	79059.0	Mm.430765	NM_019730	ENSMUSG00000073435	Nme3	1810009F08Rik|AI413736|DR-nm23|Ndk3|Nm23-DR|Nm23-M3	NME/NM23 nucleoside diphosphate kinase 3	protein-coding	1.5	12.5	0.5	1.0	0.0	0.0
Merged-chr9-35112358-2	chr9	35111858	35112858	+	806.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-4370.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57842009-3	chr10	57841502	57842502	+	806.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47458.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83646890-1	chr6	83646390	83647390	+	806.0	f0_balb.idr	exon (NM_016751, exon 5 of 7)	exon (NM_016751, exon 5 of 7)	9226.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4102160-2	chr19	4101660	4102660	+	806.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008851, intron 1 of 22)	intron (NM_008851, intron 1 of 22)	1538.0	NM_008851	18739.0	Mm.1860	NM_008851	ENSMUSG00000024851	Pitpnm1	DRES9|Mpt-1|Nir-2|PITPnm 1|Pitpnm|R75447|Rd9|RdgB|RdgB1	phosphatidylinositol transfer protein, membrane-associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64311421-2	chr15	64310921	64311921	+	806.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	1252.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-53303067-2	chr16	53302567	53303567	+	806.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-487323.0	NR_040495	73820.0	Mm.60493	NR_040495		4930404A05Rik	-	RIKEN cDNA 4930404A05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25862990-2	chr15	25862490	25863490	+	806.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 1 of 8)	HAL1|LINE|L1	19692.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70958210-1	chr11	70957710	70958710	+	806.0	f0_balb.idr	intron (NM_001083331, intron 5 of 16)	intron (NM_001083331, intron 5 of 16)	11763.0	NM_172394	19069.0	Mm.288962	NM_172394	ENSMUSG00000040667	Nup88	Nup84|Prei2	nucleoporin 88	protein-coding	2.5	10.0	10.5	0.0	0.5	5.0
Merged-chr16-57183630-1	chr16	57183130	57184130	+	806.0	f1_c57bl6.idr	intron (NM_026254, intron 13 of 17)	intron (NM_026254, intron 13 of 17)	-16298.0	NM_023175	52633.0	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	0.5	3.0	6.0	8.0	1.5	3.5
Merged-chr19-43786443-3	chr19	43785943	43786943	+	806.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013806, intron 2 of 31)	intron (NM_013806, intron 2 of 31)	4135.0	NM_013806	12780.0	Mm.39054	NM_013806	ENSMUSG00000025194	Abcc2	AI173996|Abc30|Cmoat|Mrp2|cMRP	ATP-binding cassette, sub-family C (CFTR/MRP), member 2	protein-coding	1.0	4.0	1.5	1.5	3.0	2.0
Merged-chr7-140049325-3	chr7	140048835	140049835	+	806.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010836)	promoter-TSS (NM_010836)	-247.0	NM_001347609	17703.0	Mm.4816	NM_010836	ENSMUSG00000025469	Msx3	AI323377	msh homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-21014663-2	chr1	21014163	21015163	+	806.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_177409, intron 2 of 10)	intron (NM_177409, intron 2 of 10)	63037.0	NM_027974	71877.0	Mm.29178	NM_027974	ENSMUSG00000041809	Efhc1	1700029F22Rik|mRib72-1|myoclonin1	EF-hand domain (C-terminal) containing 1	protein-coding	0.5	5.0	1.5	0.0	0.0	3.0
Merged-chr5-19663424-2	chr5	19662924	19663924	+	806.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 1 of 22)	intron (NM_001170746, intron 1 of 22)	-244094.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35654952-2	chr18	35654452	35655452	+	806.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001270646, exon 1 of 1)	exon (NM_001270646, exon 1 of 1)	247.0	NM_001270646	381148.0	Mm.297784	NM_001270646	ENSMUSG00000073600	Prob1	Gm1614	proline rich basic protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-48447440-2	chr15	48446940	48447940	+	806.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081391, intron 5 of 70)	Lx5c|LINE|L1	344549.0	NM_001081391	239420.0	Mm.309363	NM_001081391	ENSMUSG00000022311	Csmd3	4930500N14Rik|mKIAA1894	CUB and Sushi multiple domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-119397311-2	chr6	119396811	119397811	+	806.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_197985, intron 1 of 7)	intron (NM_197985, intron 1 of 7)	-8577.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95523074-2	chr10	95522574	95523574	+	806.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080560, intron 1 of 3)	B3|SINE|B2	7912.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7240483-3	chr19	7239978	7240978	+	806.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027643, intron 1 of 7)	intron (NM_027643, intron 1 of 7)	744.0	NM_027643	70999.0	Mm.329605	NM_027643	ENSMUSG00000024764	Naa40	4931433E08Rik|AU023197|Nat11|NatD	N(alpha)-acetyltransferase 40, NatD catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142604195-2	chr3	142603695	142604695	+	806.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010259, exon 6 of 11)	exon (NM_010259, exon 6 of 11)	9348.0	NM_010259	14468.0	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65979459-2	chr3	65978959	65979959	+	806.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21210.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54072797-4	chr11	54072311	54073311	+	806.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3794.0	NM_019417	30794.0	Mm.21830	NM_019417	ENSMUSG00000020388	Pdlim4	Ril	PDZ and LIM domain 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100319929-3	chr12	100319399	100320399	+	806.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 19 of 19)	intron (NM_001033213, intron 19 of 19)	43290.0	NR_045741	100038713.0	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-52191344-2	chr5	52190844	52191844	+	806.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007839)	promoter-TSS (NM_007839)	663.0	NR_015537	414108.0	Mm.383512	NR_015537	ENSMUSG00000097145	9230114K14Rik	-	RIKEN cDNA 9230114K14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171074471-2	chr1	171073971	171074971	+	806.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9819.0	NR_106103	102466998.0		NR_106103	ENSMUSG00000099119	Mir6546	Gm27408|mmu-mir-6546	microRNA 6546	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92652155-3	chr1	92651688	92652688	+	805.988892	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3347.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66319496-3	chr5	66318983	66319983	+	805.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310626, intron 10 of 15)	intron (NM_001310626, intron 10 of 15)	18182.0	NM_001201416	11787.0	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145209486-3	chr4	145209011	145210011	+	805.964294	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-14506.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25364833-4	chr15	25364423	25365423	+	805.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	48841.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-85160412-4	chr6	85159912	85160912	+	805.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22648.0	NM_011467	20751.0	Mm.28393	NM_011467	ENSMUSG00000033735	Spr	AA409688|Gm10328	sepiapterin reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79617511-3	chr12	79617029	79618029	+	805.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	307204.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95411732-4	chr11	95411258	95412258	+	805.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2325.0	NM_025287	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-103340448-4	chr4	103339931	103340931	+	805.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025909, intron 7 of 8)	intron (NM_025909, intron 7 of 8)	26585.0	NM_025909	67013.0	Mm.30021	NM_025909	ENSMUSG00000035069	Oma1	2010001O09Rik|MPRP-1|ZMPOMA1	OMA1 zinc metallopeptidase	protein-coding	17.5	10.5	7.5	4.5	19.5	10.5
Merged-chr3-8913916-2	chr3	8913416	8914416	+	805.916687	f1_balb.idr|f1_c57bl6.idr	intron (NM_025434, intron 1 of 2)	ERVL-int|LTR|ERVL	9941.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43091881-4	chr1	43091374	43092374	+	805.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013025, intron 2 of 12)	intron (NM_001013025, intron 2 of 12)	612.0	NM_001357299	73122.0	Mm.246069	NM_001013025	ENSMUSG00000070939	Tgfbrap1	3110018K12Rik|AU024090|AU042859|AW742551|Trap1	transforming growth factor, beta receptor associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-15228187-3	chr14	15227664	15228664	+	805.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-209459.0	NR_152122	77981.0	Mm.138039	NM_001033183		B230110C06Rik	-	RIKEN cDNA B230110C06 gene	ncRNA	27.5	24.5	11.0	8.0	9.0	2.0
Merged-chr5-112994462-3	chr5	112993962	112994962	+	805.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	21076.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60714117-3	chr13	60713507	60714507	+	805.888916	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	intron (NM_134062, intron 3 of 26)	72357.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	9.5	11.0	3.5	5.0	14.0	11.5
Merged-chr2-148877100-3	chr2	148876557	148877557	+	805.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1545.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97945444-4	chr15	97944940	97945940	+	805.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18789.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93938651-4	chr16	93938145	93939145	+	805.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019500, intron 2 of 2)	intron (NM_019500, intron 2 of 2)	-8828.0	NM_001165926	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	0.5	0.0	1.0	0.0	3.0	0.0
Merged-chr18-82767237-4	chr18	82766729	82767729	+	805.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-8190.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-73350526-4	chr8	73350034	73351034	+	805.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317391, intron 1 of 15)	intron (NM_001317391, intron 1 of 15)	3006.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152318880-6	chr4	152318287	152319287	+	805.847229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033489)	promoter-TSS (NM_001033489)	-162.0	NM_001033489	433809.0	Mm.156205	NM_001033489	ENSMUSG00000058498	Rnf207	D330010C22Rik|Gm143	ring finger protein 207	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-41121203-4	chr9	41120691	41121691	+	805.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	36871.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	15.5	19.0	15.5	19.0	11.0	6.0
Merged-chr7-19333880-2	chr7	19333380	19334380	+	805.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-11191.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70979757-4	chr17	70979236	70980236	+	805.825012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023402, intron 1 of 3)	B4A|SINE|B4	10780.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180578922-4	chr2	180578439	180579439	+	805.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2283.0	NM_028479	73247.0	Mm.426558	NM_028479	ENSMUSG00000027569	Mrgbp	1600027N09Rik|AW060503|C80444	MRG/MORF4L binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124011608-4	chr5	124011133	124012133	+	805.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	14781.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	81.0	131.5	105.5	74.5	266.5	190.5
Merged-chr9-60758057-1	chr9	60757557	60758557	+	805.799988	f0_balb.idr	Intergenic	Intergenic	-36385.0	NM_001357408	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115375083-4	chr6	115374586	115375586	+	805.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 1 of 7)	L3|LINE|CR1	12737.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110713152-3	chr9	110712623	110713623	+	805.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR22_Mur|LTR|ERVK	29487.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21998155-3	chr16	21997671	21998671	+	805.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2629.0	NM_001289581	239759.0	Mm.33192	NM_153404	ENSMUSG00000044626	Liph	C130037N08Rik|D16Wsu119e|H06|Lpdlr|P3|PLA1B|lpd1|lpd2|mPA-PLA1	lipase, member H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6538430-2	chr2	6537930	6538930	+	805.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	183232.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88500229-4	chr6	88499668	88500668	+	805.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	18632.0	NM_016906	53421.0	Mm.28375	NM_016906	ENSMUSG00000030082	Sec61a1	AA408394|AA410007|Sec61a	Sec61 alpha 1 subunit (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5051932-2	chr17	5051432	5052432	+	805.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 2 of 19)	intron (NM_001085355, intron 2 of 19)	56858.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-77203063-4	chr1	77202549	77203549	+	805.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	293719.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29592811-4	chr2	29592304	29593304	+	805.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26916.0	NM_054050	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5566897-3	chr17	5566396	5567396	+	805.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	74296.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113644293-4	chr6	113643798	113644798	+	805.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 1 of 11)	MIRb|SINE|MIR	5831.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67369816-4	chr7	67369320	67370320	+	805.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 1 of 11)	intron (NM_001357324, intron 1 of 11)	3038.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148707548-4	chr5	148707033	148708033	+	805.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34307.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78205211-3	chr17	78204716	78205716	+	805.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 1 of 16)	intron (NM_015800, intron 1 of 16)	4968.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80818600-3	chr12	80818102	80819102	+	805.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	MIRb|SINE|MIR	28070.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84649982-2	chr2	84649482	84650482	+	805.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355065)	promoter-TSS (NM_001355065)	-502.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	14.5	65.0	35.5	18.5	64.5	36.5
Merged-chr3-60219208-3	chr3	60218716	60219716	+	805.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137347.0	NM_032400	84112.0	Mm.125110	NM_032400	ENSMUSG00000027762	Sucnr1	Gpr91	succinate receptor 1	protein-coding	0.0	2.5	0.0	0.0	2.5	0.0
Merged-chr9-66878325-3	chr9	66877796	66878796	+	805.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	B2_Mm1t|SINE|B2	41409.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-32780832-3	chr6	32780323	32781323	+	805.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-192631.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	2.0	2.0	0.0	0.0	4.0	1.0
Merged-chr3-107953513-3	chr3	107953008	107954008	+	805.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9759.0	NM_008184	14867.0	Mm.458154	NM_008184	ENSMUSG00000068762	Gstm6	-	glutathione S-transferase, mu 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163420590-3	chr2	163420096	163421096	+	805.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_151490)	TTS (NR_151490)	825.0	NR_151490	108168734.0	Mm.440000	NR_151490		2900093K20Rik	-	RIKEN cDNA 2900093K20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-77425004-3	chr8	77424511	77425511	+	805.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 5 of 22)	B3A|SINE|B2	-92045.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165761671-3	chr1	165761165	165762165	+	805.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2093.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-85102581-2	chr10	85102081	85103081	+	805.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013028)	promoter-TSS (NM_001013028)	-46.0	NM_001013028	103266.0	Mm.335025	NM_001013028	ENSMUSG00000060935	Tmem263	AI597468	transmembrane protein 263	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119846237-2	chr4	119845737	119846737	+	805.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	31559.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	0.5	8.0	0.0	0.0	0.5	0.0
Merged-chr1-75532408-2	chr1	75531908	75532908	+	805.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_027886, exon 18 of 25)	exon (NM_027886, exon 18 of 25)	10879.0	NM_027886	71728.0	Mm.312650	NM_027886	ENSMUSG00000026213	Stk11ip	1200014D22Rik|BB131189|LIP1|LKB1IP	serine/threonine kinase 11 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50666573-3	chr17	50666012	50667012	+	805.644409	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 4 of 5)	MTC|LTR|ERVL-MaLR	-32169.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	7.0	26.0	9.5	12.0	22.5	3.5
Merged-chr5-53872152-3	chr5	53871637	53872637	+	805.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144517, intron 13 of 20)	intron (NM_144517, intron 13 of 20)	62510.0	NM_144517	67249.0	Mm.28823	NM_144517	ENSMUSG00000039178	Tbc1d19	2810453K03Rik	TBC1 domain family, member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51762201-4	chr11	51761698	51762698	+	805.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1465.0	NM_025535	66397.0	Mm.196592	NM_025535	ENSMUSG00000020386	Sar1b	2310075M17Rik|2900019I22Rik|CMRD|Sara1b|Sara2|Sarb	secretion associated Ras related GTPase 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-140351863-4	chr1	140351355	140352355	+	805.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081027, intron 2 of 27)	Lx8|LINE|L1	105598.0	NM_001081027	240776.0	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93683777-3	chr16	93683265	93684265	+	805.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173047, intron 1 of 2)	CpG	546.0	NM_173047	109857.0	Mm.4512	NM_173047	ENSMUSG00000022947	Cbr3	1110001J05Rik|C81353	carbonyl reductase 3	protein-coding	22.0	15.5	30.5	19.5	13.0	26.0
Merged-chr13-23449262-3	chr13	23448736	23449736	+	805.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16665.0	NM_013483	12231.0	Mm.1420	NM_013483	ENSMUSG00000000706	Btn1a1	Btn	butyrophilin, subfamily 1, member A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-93933029-2	chr8	93932529	93933529	+	805.583313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113384, intron 3 of 7)	intron (NM_001113384, intron 3 of 7)	79611.0	NM_011787	23802.0	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-67578257-2	chr11	67577757	67578757	+	805.583313	f1_balb.idr|f1_c57bl6.idr	intron (NM_008088, intron 1 of 13)	intron (NM_008088, intron 1 of 13)	-8243.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.0	0.5	4.0	0.0	0.5	1.5
Merged-chr5-33921200-3	chr5	33920770	33921770	+	805.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011914, intron 2 of 10)	intron (NM_011914, intron 2 of 10)	14988.0	NM_011914	24116.0	Mm.332320	NM_011914	ENSMUSG00000029111	Nelfa	Whsc2|Whsc2h	negative elongation factor complex member A, Whsc2	protein-coding	0.0	7.5	4.0	4.0	14.0	5.0
Merged-chr4-133829850-2	chr4	133829308	133830308	+	805.583313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44923.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	7.0	16.0	19.5	27.0	47.0	32.0
Merged-chr6-52424654-4	chr6	52424167	52425167	+	805.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-67784.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122911748-4	chr8	122911301	122912301	+	805.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 3 of 12)	intron (NM_001081379, intron 3 of 12)	63427.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	5.0	7.0	5.5	1.0	2.5	5.5
Merged-chr5-5365554-3	chr5	5365025	5366025	+	805.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	14726.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	3.0	6.5	11.0	4.5	5.0	2.5
Merged-chr9-57629404-4	chr9	57628875	57629875	+	805.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 7 of 14)	intron (NM_001304761, intron 7 of 14)	-8601.0	NM_199222	235416.0	Mm.295630	NM_199222	ENSMUSG00000056271	Lman1l	BC020188|slamp	lectin, mannose-binding 1 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97197204-2	chr11	97196704	97197704	+	805.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-9312.0	NM_008379	16211.0	Mm.251013	NM_008379	ENSMUSG00000001440	Kpnb1	AA409963|IPOB|Impnb	karyopherin (importin) beta 1	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr19-5662484-2	chr19	5661984	5662984	+	805.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164480, intron 1 of 16)	intron (NM_001164480, intron 1 of 16)	1223.0	NM_001164482	20469.0	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120459375-2	chr11	120458868	120459868	+	805.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_152807, intron 2 of 5)	B3A|SINE|B2	1239.0	NM_152807	67291.0	Mm.103384	NM_152807	ENSMUSG00000049957	Ccdc137	3110023B02Rik	coiled-coil domain containing 137	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101224653-2	chr15	101224153	101225153	+	805.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045326)	promoter-TSS (NR_045326)	124.0	NR_045327	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88529854-2	chr3	88529354	88530354	+	805.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2541.0	NM_001029890	72640.0	Mm.275154	NM_001029890	ENSMUSG00000074480	Mex3a	2700083E18Rik|Gm411|Rkhd4	mex3 RNA binding family member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46557521-2	chr17	46557021	46558021	+	805.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-1359.0	NM_020493	20807.0	Mm.45044	NM_020493	ENSMUSG00000015605	Srf	AW049942|AW240594	serum response factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-87199682-2	chr12	87199182	87200182	+	805.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290288)	promoter-TSS (NM_001290288)	547.0	NM_001033475	382620.0	Mm.374912	NM_001033475	ENSMUSG00000034111	Tmed8	6430595O10Rik|AI447224|Gm1184|Mem1	transmembrane p24 trafficking protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-23787806-2	chr10	23787306	23788306	+	805.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011295)	promoter-TSS (NM_011295)	-597.0	NM_011295	20042.0	Mm.371846	NM_011295	ENSMUSG00000061983	Rps12	-	ribosomal protein S12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67117063-2	chr10	67116563	67117563	+	805.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10195.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105057816-2	chr3	105057316	105058316	+	805.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-4670.0	NM_030249	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0.0	1.5	2.5	0.0	1.5	2.5
Merged-chr16-16073966-2	chr16	16073466	16074466	+	805.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 5 of 18)	intron (NM_001355731, intron 5 of 18)	72885.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118766218-1	chr9	118765718	118766718	+	805.5	f1_balb.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	54526.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	15.0	9.0	4.0	3.0	3.5	1.0
Merged-chr8-60505194-2	chr8	60504694	60505694	+	805.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011834)	promoter-TSS (NM_011834)	-930.0	NM_011834	23923.0	Mm.35020	NM_011834	ENSMUSG00000057228	Aadat	AI875679|Aadt|KATII|Kat2|Kyat2|mKat-2	aminoadipate aminotransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	3.0
Merged-chr15-89325108-2	chr15	89324608	89325608	+	805.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_182928)	TTS (NM_182928)	2388.0	NM_182928	223780.0	Mm.210541	NM_182928	ENSMUSG00000054136	Adm2	Am2|IMD|Imdn	adrenomedullin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117124214-2	chr4	117123714	117124714	+	805.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_024078, intron 2 of 6)	intron (NR_024078, intron 2 of 6)	1511.0	NR_024078	78611.0	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	7.0	13.0	13.5	12.5	12.5	11.5
Merged-chr2-32498606-2	chr2	32498106	32499106	+	805.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	-36753.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30719305-1	chr14	30718805	30719805	+	805.5	f1_balb.idr	intron (NM_001166532, intron 1 of 20)	Lx3A|LINE|L1	3690.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	0.0	0.0	7.0	11.0	14.5	11.5
Merged-chr10-94310880-1	chr10	94310380	94311380	+	805.5	f0_balb.idr	Intergenic	Intergenic	-1069.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	12.5	3.0	0.0	11.5	13.0	10.0
Merged-chr18-46521660-2	chr18	46521160	46522160	+	805.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173423, intron 2 of 2)	B1_Mus2|SINE|Alu	4311.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113196901-2	chr13	113196401	113197401	+	805.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12758.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	13.5	3.5	0.0	2.0	0.0	0.5
Merged-chr17-42892157-3	chr17	42891658	42892658	+	805.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	-15734.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6783774-2	chr17	6783274	6784274	+	805.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009510)	promoter-TSS (NM_009510)	-994.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	4.0	4.5	8.5	3.5	5.5	6.0
Merged-chr16-38095015-2	chr16	38094515	38095515	+	805.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 1 of 11)	B1_Mus2|SINE|Alu	-5755.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	0.5	8.5	10.0	0.5	8.5	10.0
Merged-chr5-64225334-2	chr5	64224834	64225834	+	805.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-5023.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-28975441-2	chr10	28974941	28975941	+	805.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026336, intron 4 of 5)	intron (NM_026336, intron 4 of 5)	10865.0	NM_026336	67719.0	Mm.440480	NM_026336	ENSMUSG00000015519	2310057J18Rik	2210414P04Rik|Leg1	RIKEN cDNA 2310057J18 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84683312-2	chr18	84682812	84683812	+	805.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023149, intron 1 of 11)	ID_B1|SINE|B4	-1253.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-42219910-2	chr15	42219410	42220410	+	805.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-350190.0	NM_175456	223513.0	Mm.148913	NM_175456	ENSMUSG00000042895	Abra	C130068O12Rik|STARS	actin-binding Rho activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr2-90470385-2	chr2	90469885	90470885	+	805.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 3 of 23)	MIR3|SINE|MIR	8789.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-45411221-2	chr8	45410721	45411721	+	805.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_126166)	promoter-TSS (NM_126166)	-602.0	NM_126166	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128463618-2	chr7	128463118	128464118	+	805.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1945.0	NM_001347640	21843.0	Mm.242072	NM_009383	ENSMUSG00000030846	Tial1	5330433G13Rik|AL033329|TIAR|mTIAR	Tia1 cytotoxic granule-associated RNA binding protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108345689-7	chr9	108345401	108346401	+	805.476196	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1930.0	NM_001311157	22258.0	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87361342-4	chr3	87360821	87361821	+	805.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009690, intron 2 of 5)	intron (NM_009690, intron 2 of 5)	3440.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	64.5	191.5	115.0	31.5	97.0	75.0
Merged-chr2-22758732-4	chr2	22758252	22759252	+	805.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15575.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-77459823-3	chr1	77459331	77460331	+	805.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007936, intron 3 of 17)	intron (NM_007936, intron 3 of 17)	36937.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-101886825-3	chr2	101886269	101887269	+	805.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029635, intron 1 of 5)	intron (NM_029635, intron 1 of 5)	507.0	NM_029635	76501.0	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	32.0	32.5	24.0	19.5	42.5	17.0
Merged-chr7-128690312-4	chr7	128689796	128690796	+	805.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346517, intron 1 of 5)	intron (NM_001346517, intron 1 of 5)	1426.0	NM_001346517	101490.0	Mm.490344	NM_178641	ENSMUSG00000042105	Inpp5f	5830435P03Rik|AI115354|AW561896|SAC2|cI-27|hSAC2|mKIAA0966	inositol polyphosphate-5-phosphatase F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-74470983-4	chr5	74470496	74471496	+	805.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114660, intron 3 of 8)	L1M2|LINE|L1	60746.0	NM_178672	212986.0	Mm.134147	NM_178672	ENSMUSG00000062110	Scfd2	E430013M20Rik|STXBP1L1	Sec1 family domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148900791-6	chr4	148900218	148901218	+	805.430542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027195, intron 3 of 15)	CpG	51604.0	NR_154553	108168987.0	Mm.393596	NR_154553		Gm13205	AA408865	predicted gene 13205	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-69663674-4	chr18	69663159	69664159	+	805.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 15 of 19)	intron (NM_001361128, intron 15 of 19)	-261900.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115010419-4	chr11	115009850	115010850	+	805.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8470.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136179619-3	chr4	136179075	136180075	+	805.416687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177733, intron 2 of 6)	intron (NM_177733, intron 2 of 6)	-1207.0	NM_001305399	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	7.0	16.0	16.0	7.0	15.5	1.0
Merged-chr10-82932209-2	chr10	82931709	82932709	+	805.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-53288.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	0.0	0.0	1.5	2.0	0.0	0.5
Merged-chr13-60624549-3	chr13	60624144	60625144	+	805.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	22433.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120170954-3	chr2	120170451	120171451	+	805.366699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177845, intron 17 of 19)	intron (NM_177845, intron 17 of 19)	-16376.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr6-29735551-4	chr6	29735065	29736065	+	805.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176996)	promoter-TSS (NM_176996)	68.0	NM_176996	319757.0	Mm.29279	NM_176996	ENSMUSG00000001761	Smo	E130215L21Rik|Smoh|bnb|smoothened	smoothened, frizzled class receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28593189-2	chr17	28592689	28593689	+	805.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_016795, intron 13 of 15)	intron (NM_016795, intron 13 of 15)	17470.0	NM_026571	328789.0	Mm.284760	NM_026571	ENSMUSG00000062252	Lhfpl5	9330179O15Rik|Tmhs|hscy	lipoma HMGIC fusion partner-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50001035-3	chr16	50000548	50001548	+	805.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20588.0	NR_045001	628951.0	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34586373-2	chr17	34585873	34586873	+	805.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010929, intron 27 of 29)	PB1D9|SINE|Alu	-3433.0	NM_134116	106512.0	Mm.26584	NM_134116	ENSMUSG00000034786	Gpsm3	AA960287|AGS4	G-protein signalling modulator 3 (AGS3-like, C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73170554-2	chr14	73170054	73171054	+	805.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_134083, intron 10 of 14)	intron (NM_134083, intron 10 of 14)	27769.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117190863-3	chr4	117190404	117191404	+	805.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8280.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29486035-3	chr17	29485509	29486509	+	805.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-5036.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.0	5.5	0.5	0.0	2.0	2.0
Merged-chr3-138012580-4	chr3	138012084	138013084	+	805.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	-31035.0	NM_011932	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	18.5	21.0	20.5	5.5	0.5	7.0
Merged-chr17-34887720-4	chr17	34887226	34888226	+	805.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS4|LTR|ERV1	-5626.0	NM_013484	12263.0	Mm.283217	NM_013484	ENSMUSG00000024371	C2	-	complement component 2 (within H-2S)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36324379-2	chr1	36323879	36324879	+	805.25	f1_balb.idr|f1_c57bl6.idr	TTS (NR_033310)	TTS (NR_033310)	16646.0	NM_001172205	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6046124-2	chr19	6045640	6046640	+	805.25	f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_028769)	promoter-TSS (NM_028769)	-436.0	NM_028769	74126.0	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	112.5	307.5	203.0	117.0	282.0	186.5
Merged-chr14-55918844-4	chr14	55918351	55919351	+	805.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18619.0	NM_001082975	654795.0	Mm.486218	NM_001082975	ENSMUSG00000022223	Sdr39u1	2310014G06Rik	short chain dehydrogenase/reductase family 39U, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-42391461-4	chr6	42390967	42391967	+	805.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	-8771.0	NM_001001452	387514.0	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69408261-2	chr11	69407761	69408761	+	805.25	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001017426, exon 3 of 23)	5' UTR (NM_001017426, exon 3 of 23)	5414.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	10.0	6.0	11.0	3.5	17.0	14.5
Merged-chr12-85392589-2	chr12	85392089	85393089	+	805.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17872.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117089669-2	chr11	117089169	117090169	+	805.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12321.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-8510408-4	chr6	8509974	8510974	+	805.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133236, intron 1 of 7)	intron (NM_133236, intron 1 of 7)	874.0	NM_133236	170772.0	Mm.210787	NM_133236	ENSMUSG00000029638	Glcci1	2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1	glucocorticoid induced transcript 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-19974627-2	chr14	19974127	19975127	+	805.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285908, intron 1 of 3)	intron (NM_001285908, intron 1 of 3)	2066.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126931399-2	chr8	126930899	126931899	+	805.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_024214, exon 5 of 5)	3' UTR (NM_024214, exon 5 of 5)	14522.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6933983-4	chr19	6933505	6934505	+	805.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008431, intron 1 of 6)	CpG	510.0	NM_008431	16528.0	Mm.12894	NM_008431	ENSMUSG00000024957	Kcnk4	Catsperz|MLZ-622|TRAAK|TRAAKt|Tex40	potassium channel, subfamily K, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-37197371-3	chr17	37196857	37197857	+	805.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001011518, exon 1 of 1)	exon (NM_001011518, exon 1 of 1)	609.0	NM_001011518	258219.0	Mm.377382	NM_001011518	ENSMUSG00000043827	Olfr94	MOR256-32P	olfactory receptor 94	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95310304-2	chr3	95309804	95310804	+	805.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-3128.0	NM_023628	71790.0	Mm.218844	NM_023628	ENSMUSG00000015702	Anxa9	1110003P15Rik|2310069F17Rik	annexin A9	protein-coding	3.0	0.0	0.0	0.0	0.0	2.0
Merged-chr14-52014122-6	chr14	52013664	52014664	+	805.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027248, intron 1 of 4)	intron (NM_027248, intron 1 of 4)	394.0	NM_001253695	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	9.0	8.5	3.0	3.0	7.5	4.5
Merged-chr14-55900211-3	chr14	55899694	55900694	+	805.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001082975)	promoter-TSS (NM_001082975)	38.0	NM_001082975	654795.0	Mm.486218	NM_001082975	ENSMUSG00000022223	Sdr39u1	2310014G06Rik	short chain dehydrogenase/reductase family 39U, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136234492-2	chr1	136233992	136234992	+	805.214294	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028872)	promoter-TSS (NM_028872)	-212.0	NM_028872	67313.0	Mm.36763	NM_028872	ENSMUSG00000041605	5730559C18Rik	1700034M08Rik|4933426C09Rik|AI586180|D1Mgi54|Inava	RIKEN cDNA 5730559C18 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10171970-4	chr19	10171474	10172474	+	805.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-10914.0	NM_146094	76267.0	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-133135132-3	chr1	133134651	133135651	+	805.1777950000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133819, intron 1 of 1)	intron (NM_133819, intron 1 of 1)	3985.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	7.5	3.0	4.0	8.5	1.0	5.0
Merged-chr19-34291143-2	chr19	34290643	34291643	+	805.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_007987, intron 1 of 8)	intron (NM_007987, intron 1 of 8)	484.0	NM_001146708	14102.0	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	4.5	3.5	4.0	3.0	11.0	3.5
Merged-chr4-8854968-2	chr4	8854468	8855468	+	805.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_001277149, exon 31 of 38)	exon (NM_001277149, exon 31 of 38)	103644.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128034949-2	chr10	128034449	128035449	+	805.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113199)	promoter-TSS (NM_001113199)	-397.0	NM_013608	17938.0	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108113903-4	chr3	108113457	108114457	+	805.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010306, intron 5 of 8)	intron (NM_010306, intron 5 of 8)	20891.0	NM_008141	14686.0	Mm.439652	NM_008141	ENSMUSG00000009108	Gnat2	AW490837|Gnat-2|Gt-2|Tcalpha	guanine nucleotide binding protein, alpha transducing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3419902-4	chr4	3419414	3420414	+	805.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117176.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	0.0	0.0	0.0	2.0	2.0	0.0
Merged-chr11-78382870-3	chr11	78382364	78383364	+	805.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008238, intron 1 of 8)	intron (NM_008238, intron 1 of 8)	3744.0	NM_008238	15218.0	Mm.4496	NM_008238	ENSMUSG00000002057	Foxn1	D11Bhm185e|Fkh19|HFH-11|Hfh11|Whn|nu|nude	forkhead box N1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-47277460-3	chr13	47276961	47277961	+	805.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83458.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	19.0	17.0	23.0	4.0	24.0	19.0
Merged-chr14-33146205-3	chr14	33145563	33146563	+	805.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146022, intron 8 of 58)	intron (NM_001146022, intron 8 of 58)	39003.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191244544-3	chr1	191244063	191245063	+	805.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20109.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118084025-2	chr11	118083525	118084525	+	805.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167746, intron 37 of 80)	intron (NM_001167746, intron 37 of 80)	45194.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101297740-2	chr7	101297240	101298240	+	805.083374	f1_balb.idr|f1_c57bl6.idr	intron (NR_152152, intron 3 of 16)	MIR|SINE|MIR	4348.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-48225833-4	chr4	48225357	48226357	+	805.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355184, intron 3 of 10)	intron (NM_001355184, intron 3 of 10)	-12642.0	NR_035484	100316708.0		NR_035484	ENSMUSG00000087844	Mir1958	mmu-mir-1958	microRNA 1958	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122261756-3	chr7	122261254	122262254	+	805.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27371.0	NM_001316672	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-62856496-4	chr16	62855995	62856995	+	805.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011173, intron 1 of 14)	intron (NM_011173, intron 1 of 14)	2188.0	NM_011173	19128.0	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27179659-2	chr7	27179159	27180159	+	805.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029391)	promoter-TSS (NM_029391)	-776.0	NM_029391	19342.0	Mm.482114	NM_029391	ENSMUSG00000053291	Rab4b	1500031G17Rik	RAB4B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-59684229-2	chr1	59683729	59684729	+	805.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018868)	promoter-TSS (NM_018868)	-777.0	NM_018868	55989.0	Mm.220367	NM_018868	ENSMUSG00000026020	Nop58	MSSP|Nol5|SIK|nop5	NOP58 ribonucleoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88684511-2	chr3	88684011	88685011	+	805.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1276.0	NM_028814	74200.0	Mm.251800	NM_028814	ENSMUSG00000028060	2810403A07Rik	A430106P18Rik|AI256352|AI451678|Blom7|Khdc4|Kiaa0907	RIKEN cDNA 2810403A07 gene	protein-coding	11.0	32.0	8.0	23.0	44.0	7.5
Merged-chr4-59152062-2	chr4	59151452	59152452	+	805.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37598.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	6.5	2.0	3.5	1.0	2.0	10.5
Merged-chr15-98634892-4	chr15	98634404	98635404	+	805.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001286226, exon 1 of 12)	5' UTR (NM_001286226, exon 1 of 12)	137.0	NM_001286226	12297.0	Mm.3544	NM_007581	ENSMUSG00000003352	Cacnb3	Beta3|CAB3|Ca(v)beta3|Cchb3	calcium channel, voltage-dependent, beta 3 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-99019319-2	chr14	99018819	99019819	+	805.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26817.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191878961-1	chr1	191878461	191879461	+	805.0	f1_balb.idr	Intergenic	MIR|SINE|MIR	-27820.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	22.0	40.0	43.5	43.5	77.0	83.5
Merged-chr16-11423273-2	chr16	11422773	11423773	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 11 of 20)	intron (NM_028964, intron 11 of 20)	17625.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56530748-1	chr19	56530248	56531248	+	805.0	f1_balb.idr	intron (NR_153440, intron 9 of 9)	intron (NR_153440, intron 9 of 9)	17374.0	NM_001360437	55947.0	Mm.2805	NM_018831	ENSMUSG00000025077	Dclre1a	2810043H12Rik|AU022226|Pso2|Smn1a|Snm1|mKIAA0086	DNA cross-link repair 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80197640-4	chr12	80197128	80198128	+	805.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 4 of 20)	intron (NM_134156, intron 4 of 20)	62743.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-121071614-2	chr7	121071114	121072114	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030691, intron 1 of 5)	intron (NM_030691, intron 1 of 5)	2916.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153415685-2	chr2	153415185	153416185	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001986, intron 7 of 7)	intron (NM_001001986, intron 7 of 7)	28794.0	NM_001001986	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53088673-2	chr4	53088173	53089173	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 11 of 49)	intron (NM_013454, intron 11 of 49)	71222.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.5	0.0	1.5	0.0	0.0	8.0
Merged-chr5-43862353-2	chr5	43861853	43862853	+	805.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6456.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	3.5	8.0	8.0	4.5	7.5	8.0
Merged-chr7-79859135-1	chr7	79858635	79859635	+	805.0	f0_balb.idr	Intergenic	Intergenic	-10925.0	NM_008486	16790.0	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120656523-2	chr11	120656023	120657023	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175263, intron 8 of 11)	intron (NM_175263, intron 8 of 11)	4314.0	NM_175263	77583.0	Mm.32839	NM_175263	ENSMUSG00000042988	Notum	5730593N15Rik	notum palmitoleoyl-protein carboxylesterase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61398022-3	chr18	61397592	61398592	+	805.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029879)	promoter-TSS (NR_029879)	-192.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-64435823-1	chr11	64435323	64436323	+	805.0	f1_c57bl6.idr	non-coding (NR_028445, exon 1 of 1)	non-coding (NR_028445, exon 1 of 1)	491.0	NM_178870	15478.0	Mm.340214	NM_178870	ENSMUSG00000047759	Hs3st3a1	3Ost3a|Hs3st3a	heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1	protein-coding	0.5	15.0	11.5	2.5	5.5	0.0
Merged-chr15-78901460-1	chr15	78900960	78901960	+	805.0	f1_c57bl6.idr	exon (NM_001316684, exon 3 of 18)	exon (NM_001316684, exon 3 of 18)	1692.0	NM_009164	20401.0	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	0.0	6.0	4.5	17.0	2.5	4.5
Merged-chr11-62602068-2	chr11	62601568	62602568	+	805.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030738)	promoter-TSS (NR_030738)	-809.0	NR_030738	69221.0	Mm.270874	NR_030738	ENSMUSG00000086841	2410006H16Rik	-	RIKEN cDNA 2410006H16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-52003727-4	chr11	52003238	52004238	+	805.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153785)	promoter-TSS (NM_153785)	-483.0	NM_001166657	213084.0	Mm.280557	NM_153785	ENSMUSG00000020389	Cdkl3	AI852479|B230379H01Rik	cyclin-dependent kinase-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82139592-1	chr11	82139092	82140092	+	805.0	f0_balb.idr	Intergenic	Intergenic	24407.0	NM_021443	20307.0	Mm.42029	NM_021443	ENSMUSG00000009185	Ccl8	1810063B20Rik|AB023418|HC14|MCP-2|Mcp2|Scya8	chemokine (C-C motif) ligand 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57098486-4	chr17	57097991	57098991	+	805.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033508, intron 3 of 3)	intron (NR_033508, intron 3 of 3)	-6894.0	NM_009404	21950.0	Mm.41171	NM_009404	ENSMUSG00000035678	Tnfsf9	4-1BB-L|4-1BBL|AI848817|Cd137l|Ly63l	tumor necrosis factor (ligand) superfamily, member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr2-167387932-2	chr2	167387432	167388432	+	805.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33778.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49859419-2	chr11	49858919	49859919	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016961, intron 2 of 11)	L1MEg|LINE|L1	12668.0	NM_016961	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98835198-2	chr7	98834698	98835698	+	805.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285792)	promoter-TSS (NM_001285792)	86.0	NM_001285792	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29796789-2	chr11	29796305	29797305	+	805.0	f0_balb.idr|f1_balb.idr	intron (NM_146016, intron 21 of 41)	RodERV21-int|LTR|ERV1	28863.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	5.5	4.5	9.0	12.5	10.5	14.5
Merged-chr11-69902155-1	chr11	69901655	69902655	+	805.0	f0_balb.idr	exon (NM_001291119, exon 1 of 28)	exon (NM_001291119, exon 1 of 28)	339.0	NM_001013414	216860.0	Mm.268347	NM_001013414	ENSMUSG00000047284	Neurl4	-	neuralized E3 ubiquitin protein ligase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-92927670-2	chr12	92927170	92928170	+	805.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	517153.0	NR_126436	75295.0	Mm.243878	NR_126436	ENSMUSG00000113164	4930559C10Rik	-	RIKEN cDNA 4930559C10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100612061-4	chr15	100611547	100612547	+	805.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3063.0	NR_045701	78445.0	Mm.44383	NR_045701	ENSMUSG00000097093	C330013E15Rik	-	RIKEN cDNA C330013E15 gene	ncRNA	1.5	0.0	0.5	0.0	2.0	1.0
Merged-chr9-69442722-1	chr9	69442222	69443222	+	805.0	f0_balb.idr	Intergenic	Intergenic	-10961.0	NM_007585	12306.0	Mm.238343	NM_007585	ENSMUSG00000032231	Anxa2	AW215814|Cal1h	annexin A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54921776-3	chr11	54921273	54922273	+	805.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271456, intron 12 of 18)	intron (NM_001271456, intron 12 of 18)	18919.0	NM_008161	14778.0	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-177442682-2	chr1	177442182	177443182	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355099, intron 1 of 1)	CpG	331.0	NM_001355100	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-39003023-2	chr2	39002523	39003523	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025592, intron 3 of 3)	intron (NM_025592, intron 3 of 3)	2108.0	NM_025592	66489.0	Mm.345333	NM_025592	ENSMUSG00000062997	Rpl35	2410039E09Rik	ribosomal protein L35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41304051-2	chr19	41303563	41304563	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 9 of 16)	L2b|LINE|L2	-40059.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	1.0	9.0	12.0	0.0	16.0	6.5
Merged-chr17-70753290-2	chr17	70752790	70753790	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	RMER10B|LTR|ERVL	93487.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123903990-2	chr5	123903490	123904490	+	805.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-3285.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	0.0	3.5	3.0	5.5	5.5	2.0
Merged-chr5-134688163-2	chr5	134687663	134688663	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010717, intron 1 of 15)	intron (NM_010717, intron 1 of 15)	427.0	NM_010717	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23440178-2	chr13	23439678	23440678	+	805.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-9161.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98777979-2	chr15	98777479	98778479	+	805.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011718, exon 1 of 5)	5' UTR (NM_011718, exon 1 of 5)	171.0	NM_011718	22410.0	Mm.4709	NM_011718	ENSMUSG00000022996	Wnt10b	Wnt12	wingless-type MMTV integration site family, member 10B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72337364-2	chr8	72336864	72337864	+	805.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18302.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	5.5	10.0	3.5	5.5	4.5	4.5
Merged-chr7-45134544-2	chr7	45134044	45135044	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_102725, intron 4 of 7)	intron (NR_102725, intron 4 of 7)	1888.0	NM_013520	14256.0	Mm.1658	NM_013520	ENSMUSG00000110206	Flt3l	Flt3lg|Ly72L	FMS-like tyrosine kinase 3 ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60802629-2	chr18	60802146	60803146	+	805.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30|LTR|ERV1	-1203.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	100.5	240.5	115.5	43.5	214.0	80.0
Merged-chr11-100730304-2	chr11	100729804	100730804	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305003, intron 1 of 5)	intron (NM_001305003, intron 1 of 5)	7911.0	NM_024456	19345.0	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27331761-2	chr7	27331261	27332261	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175641, intron 4 of 32)	intron (NM_175641, intron 4 of 32)	1887.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4758015-2	chr19	4757515	4758515	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025717, intron 2 of 3)	intron (NM_025717, intron 2 of 3)	1490.0	NM_025717	66704.0	Mm.396734	NM_025717	ENSMUSG00000033760	Rbm4b	4921506I22Rik|AI504630|AI506404|Lark2|Neosin	RNA binding motif protein 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120025611-2	chr9	120025111	120026111	+	805.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2013.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145304244-1	chr6	145303744	145304744	+	805.0	f0_c57.idr	Intergenic	RSINE1|SINE|B4	53692.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	279.5	643.0	430.0	145.0	440.0	256.5
Merged-chr19-6125375-2	chr19	6124875	6125875	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026912, intron 1 of 7)	intron (NM_026912, intron 1 of 7)	2840.0	NM_026912	69024.0	Mm.329629	NM_026912	ENSMUSG00000024787	Snx15	1500032B08Rik|E130013C21Rik	sorting nexin 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-62249119-2	chr14	62248619	62249619	+	805.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43860.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131055779-1	chr2	131055279	131056279	+	805.0	f1_c57bl6.idr	exon (NM_001163529, exon 8 of 20)	exon (NM_001163529, exon 8 of 20)	8035.0	NR_136922	110751.0	Mm.108550	NM_033615	ENSMUSG00000027318	Adam33	Adaml	a disintegrin and metallopeptidase domain 33	protein-coding	5.0	6.5	3.0	5.0	0.0	0.0
Merged-chr5-76779325-1	chr5	76778825	76779825	+	805.0	f0_balb.idr	Intergenic	Intergenic	-61274.0	NM_001163793	320827.0	Mm.101504	NM_001163793	ENSMUSG00000036377	C530008M17Rik	2810489J07Rik|4930529A19Rik|4931405B09Rik|Kiaa1211|mKIAA1211	RIKEN cDNA C530008M17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152934128-3	chr1	152933642	152934642	+	805.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-20959.0	NM_175460	226518.0	Mm.40548	NM_175460	ENSMUSG00000042751	Nmnat2	AI843915|D030041I09Rik|PNAT1|PNAT2	nicotinamide nucleotide adenylyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112706952-2	chr13	112706452	112707452	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178746, intron 10 of 14)	intron (NM_178746, intron 10 of 14)	46186.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85285985-1	chr1	85285485	85286485	+	805.0	f1_balb.idr	Intergenic	B3|SINE|B2	-15419.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-18925354-4	chr7	18924854	18925854	+	804.954163	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029877)	promoter-TSS (NM_001029877)	-534.0	NM_001029877	384569.0	Mm.262724	NM_001029877	ENSMUSG00000030411	Nova2	Gm1424	neuro-oncological ventral antigen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34130497-4	chr13	34129984	34130984	+	804.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023716)	promoter-TSS (NM_023716)	-130.0	NM_023716	73710.0	Mm.379227	NM_023716	ENSMUSG00000045136	Tubb2b	2410129E14Rik|brdp	tubulin, beta 2B class IIB	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-104296921-3	chr7	104296398	104297398	+	804.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8792.0	NM_001310602	667823.0	Mm.482375	NM_001310602	ENSMUSG00000060441	Trim5	EG667823|Gm8833	tripartite motif-containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36918136-3	chr1	36917622	36918622	+	804.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 1 of 40)	intron (NM_018872, intron 1 of 40)	21405.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153543189-4	chr2	153542685	153543685	+	804.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-13214.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	7.0	15.0	14.0	13.0	12.0	13.5
Merged-chr10-67318183-3	chr10	67317667	67318667	+	804.916687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32886.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-100684342-2	chr3	100683842	100684842	+	804.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010763, intron 1 of 12)	intron (NM_010763, intron 1 of 12)	1131.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-80670619-4	chr1	80670151	80671151	+	804.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	MTE2a|LTR|ERVL-MaLR	-5299.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99596374-5	chr15	99595875	99596875	+	804.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4825.0	NM_175087	11831.0	Mm.202309	NM_175087	ENSMUSG00000043144	Aqp6	AI790337	aquaporin 6	protein-coding	3.0	2.0	0.5	3.0	2.0	0.5
Merged-chr8-40852129-3	chr8	40851610	40852610	+	804.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1-int|LTR|ERVL-MaLR	-10257.0	NM_007514	11988.0	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	10.5	23.0	13.0	4.5	2.5	0.5
Merged-chr7-127213585-4	chr7	127213078	127214078	+	804.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_017461)	TTS (NM_017461)	1970.0	NM_016754	17907.0	Mm.14526	NM_016754	ENSMUSG00000030672	Mylpf	2410014J02Rik|MLC-2|Mlc2	myosin light chain, phosphorylatable, fast skeletal muscle	protein-coding	0.0	1.5	0.0	5.0	2.0	3.0
Merged-chr10-127569670-4	chr10	127569201	127570201	+	804.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 34 of 88)	intron (NM_008512, intron 34 of 88)	-35142.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	1.5	2.5	4.0	0.0	7.5	0.5
Merged-chr3-59344314-4	chr3	59343821	59344821	+	804.857178	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162884)	promoter-TSS (NM_001162884)	-65.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23879830-4	chr13	23879337	23880337	+	804.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_121611, intron 8 of 12)	intron (NR_121611, intron 8 of 12)	9564.0	NM_001170638	20504.0	Mm.2656	NM_009198	ENSMUSG00000021335	Slc17a1	NAPI-1|Napi1|Npt1	solute carrier family 17 (sodium phosphate), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24781707-2	chr5	24781207	24782207	+	804.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23864.0	NM_153076	214301.0	Mm.63484	NM_153076	ENSMUSG00000038135	Crygn	-	crystallin, gamma N	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-69584656-2	chr18	69584156	69585156	+	804.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	238496.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-8134893-2	chr8	8134393	8135393	+	804.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	525880.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34080027-4	chr11	34079530	34080530	+	804.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 13 of 20)	intron (NM_010696, intron 13 of 20)	18524.0	NR_155520	76874.0	Mm.437529	NR_155520		4930469K13Rik	-	RIKEN cDNA 4930469K13 gene	ncRNA	7.0	0.0	1.0	7.5	2.5	1.0
Merged-chr13-64126138-4	chr13	64125630	64126630	+	804.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001321, intron 1 of 11)	MTD|LTR|ERVL-MaLR	3200.0	NM_001001321	70484.0	Mm.133731	NM_001001321	ENSMUSG00000033114	Slc35d2	5730408I21Rik|SQV7L|UGTrel8|hfrc|mUGTrel8	solute carrier family 35, member D2	protein-coding	0.0	19.0	14.5	5.0	5.5	6.5
Merged-chr14-57525515-3	chr14	57524976	57525976	+	804.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145837, exon 2 of 3)	exon (NM_145837, exon 2 of 3)	647.0	NM_145837	239114.0	Mm.390726	NM_145837	ENSMUSG00000050222	Il17d	AI462269|IL-17D	interleukin 17D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55703683-3	chr19	55703184	55704184	+	804.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1480.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	6.0	10.5	7.0	10.0	22.5	13.5
Merged-chr17-31685650-3	chr17	31685141	31686141	+	804.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7710.0	NM_001278570	12954.0	Mm.1228	NM_013501	ENSMUSG00000024041	Cryaa	Acry-1|Crya-1|Crya1|DAcry-1|lop18	crystallin, alpha A	protein-coding	0.0	2.0	0.0	1.0	0.0	2.0
Merged-chr13-47044444-4	chr13	47043937	47044937	+	804.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172262, intron 1 of 20)	intron (NM_172262, intron 1 of 20)	938.0	NM_172262	218214.0	Mm.31259	NM_172262	ENSMUSG00000038080	Kdm1b	4632428N09Rik|AI482520|Aof1	lysine (K)-specific demethylase 1B	protein-coding	8.0	4.5	5.0	3.0	14.0	4.0
Merged-chr18-70495095-4	chr18	70494607	70495607	+	804.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289650, intron 6 of 8)	RMER15|LTR|ERVL	-21679.0	NR_105775	102466152.0		NR_105775	ENSMUSG00000098721	Mir6357	Gm27333|mmu-mir-6357	microRNA 6357	ncRNA	9.5	11.0	15.5	6.0	13.5	10.5
Merged-chr10-80831337-3	chr10	80830837	80831837	+	804.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ZP3AR|Satellite|Satellite	2540.0	NR_035503	100316778.0		NR_035503	ENSMUSG00000087993	Mir1982	mir-1982|mmu-mir-1982	microRNA 1982	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118905930-3	chr2	118905428	118906428	+	804.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045523, intron 1 of 6)	intron (NM_001045523, intron 1 of 6)	4313.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	21.0	2.5	1.5	1.5	14.5	3.5
Merged-chr5-143059488-3	chr5	143058985	143059985	+	804.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	53535.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-40526267-3	chr3	40525731	40526731	+	804.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3319.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111375686-3	chr12	111375142	111376142	+	804.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183016, intron 1 of 36)	intron (NM_183016, intron 1 of 36)	2076.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-101182199-2	chr9	101181717	101182717	+	804.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161362, intron 4 of 13)	intron (NM_001161362, intron 4 of 13)	16856.0	NM_172144	235542.0	Mm.335386	NM_172144	ENSMUSG00000043154	Ppp2r3a	3222402P14Rik|A730042E07	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding	0.0	4.0	3.0	0.0	2.0	3.0
Merged-chr8-71465412-2	chr8	71464912	71465912	+	804.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_053162, exon 2 of 2)	exon (NM_053162, exon 2 of 2)	486.0	NM_053162	94065.0	Mm.29489	NM_053162	ENSMUSG00000034880	Mrpl34	0610007O17Rik|D8Bwg1484e	mitochondrial ribosomal protein L34	protein-coding	13.0	20.5	7.5	12.0	12.5	13.0
Merged-chr6-119348458-2	chr6	119347958	119348958	+	804.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362214, intron 9 of 11)	intron (NM_001362214, intron 9 of 11)	-17692.0	NM_172492	211187.0	Mm.121498	NM_172492	ENSMUSG00000055003	Lrtm2	A230084J22|AI841794	leucine-rich repeats and transmembrane domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-178527327-2	chr1	178526827	178527827	+	804.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1798.0	NM_001161665	269152.0	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63605620-2	chr9	63605120	63606120	+	804.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	2974.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128761518-2	chr2	128761018	128762018	+	804.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 7 of 18)	L1MEc|LINE|L1	-56785.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43531077-2	chr19	43530577	43531577	+	804.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6472.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86971119-4	chr17	86970628	86971628	+	804.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	8017.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	21.0	27.5	43.0	4.0	9.0	11.0
Merged-chr11-86584235-2	chr11	86583735	86584735	+	804.6999509999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029738)	promoter-TSS (NR_029738)	-77.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136309939-3	chr4	136309433	136310433	+	804.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-1009.0	NM_001277122	74326.0	Mm.31051	NM_028871	ENSMUSG00000066037	Hnrnpr	2610003J05Rik|2610528B01Rik|Hnrpr	heterogeneous nuclear ribonucleoprotein R	protein-coding	0.0	0.0	4.0	0.0	0.0	4.0
Merged-chr6-54934575-3	chr6	54934034	54935034	+	804.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171007, intron 7 of 11)	intron (NM_001171007, intron 7 of 11)	37127.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22123766-3	chr16	22123220	22124220	+	804.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	39579.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94565613-3	chr16	94565107	94566107	+	804.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4599.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-72197234-3	chr2	72196733	72197733	+	804.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355478, intron 8 of 26)	intron (NM_001355478, intron 8 of 26)	-88404.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	18.5	0.5	5.5	5.0	0.5	0.5
Merged-chr12-24697263-3	chr12	24696751	24697751	+	804.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-11003.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	6.5	1.0	0.0	1.5	0.0	0.0
Merged-chr9-118748547-3	chr9	118748024	118749024	+	804.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	36832.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	7.5	0.0	0.5	1.5	4.0	3.0
Merged-chr17-83278545-4	chr17	83278192	83279192	+	804.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63409.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32552833-3	chr11	32552299	32553299	+	804.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	19533.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	32.5	82.0	40.5	53.0	81.5	69.0
Merged-chr4-140153413-2	chr4	140152937	140153937	+	804.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_198610, intron 2 of 9)	intron (NM_198610, intron 2 of 9)	10564.0	NR_153821	102636673.0	Mm.449180	NR_153821		Gm13029	Gm33676	predicted gene 13029	ncRNA	1.5	11.0	8.0	0.0	0.0	0.0
Merged-chr11-79084988-2	chr11	79084488	79085488	+	804.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	-25152.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40736696-2	chr19	40736184	40737184	+	804.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 8 of 9)	intron (NM_001304721, intron 8 of 9)	76914.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	3.0	9.5	8.0	0.0	0.0	8.0
Merged-chr3-27187958-2	chr3	27187458	27188458	+	804.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	4954.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84666092-2	chr17	84665592	84666592	+	804.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_031884, intron 10 of 12)	intron (NM_031884, intron 10 of 12)	-10210.0	NM_001286005	67470.0	Mm.26581	NM_026180	ENSMUSG00000024254	Abcg8	1300003C16Rik|AI114946|sterolin-2	ATP binding cassette subfamily G member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94476932-4	chr10	94476433	94477433	+	804.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	RLTR20D|LTR|ERVK	-37924.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55567417-4	chr4	55566886	55567886	+	804.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34911.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	10.5	1.5	0.0	0.0	2.0	2.5
Merged-chr13-73718445-4	chr13	73717934	73718934	+	804.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17654.0	NM_028878	74338.0	Mm.271635	NM_028878	ENSMUSG00000021565	Slc6a19	4632401C08Rik|B<0>AT1	solute carrier family 6 (neurotransmitter transporter), member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91239293-4	chr1	91238798	91239798	+	804.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11006.0	NM_001355763	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-82991514-4	chr6	82990968	82991968	+	804.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 4 of 9)	intron (NM_033079, intron 4 of 9)	42003.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-37417721-4	chr6	37417212	37418212	+	804.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	24436.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58686324-3	chr16	58685830	58686830	+	804.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16122.0	NM_007757	12892.0	Mm.291519	NM_007757	ENSMUSG00000022742	Cpox	CPX|Cpo|HCP|cac|nct	coproporphyrinogen oxidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136573686-3	chr1	136573191	136574191	+	804.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51210.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-76176649-3	chr5	76176155	76177155	+	804.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19-int|LTR|ERVK	-7225.0	NM_011626	21982.0	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44470548-4	chr10	44470029	44471029	+	804.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11781.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-193138909-4	chr1	193138353	193139353	+	804.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8583.0	NR_151719	215193.0	Mm.173758	NM_145415	ENSMUSG00000016181	Diexf	AA408296|AW045375|Def	digestive organ expansion factor homolog (zebrafish)	protein-coding	0.0	0.5	5.0	0.0	0.0	0.5
Merged-chr14-70107599-4	chr14	70107100	70108100	+	804.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021328, intron 1 of 8)	intron (NM_021328, intron 1 of 8)	7507.0	NM_001360404	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-74597181-3	chr13	74596670	74597670	+	804.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42683.0	NM_030711	80898.0	Mm.83526	NM_030711	ENSMUSG00000021583	Erap1	A-LAP|ARTS-1|Arts1|ERAAP|PILSA|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7883715-3	chr10	7883183	7884183	+	804.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47302.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-154090026-3	chr1	154089528	154090528	+	804.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-111159.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26463726-3	chr17	26463232	26464232	+	804.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	44740.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-48390089-3	chr9	48389580	48390580	+	804.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172921, intron 4 of 8)	intron (NM_172921, intron 4 of 8)	28039.0	NM_172921	244853.0	Mm.325522	NM_172921	ENSMUSG00000044229	Nxpe4	C130036J11|D930028F11Rik|Fam55d	neurexophilin and PC-esterase domain family, member 4	protein-coding	46.5	82.5	83.0	3.5	0.0	3.5
Merged-chr1-80660626-4	chr1	80660136	80661136	+	804.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	4716.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107922155-3	chr4	107921658	107922658	+	804.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009949, intron 1 of 4)	intron (NM_009949, intron 1 of 4)	1431.0	NM_009949	12896.0	Mm.307620	NM_009949	ENSMUSG00000028607	Cpt2	AI323697|CPTII	carnitine palmitoyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38484338-4	chr18	38483848	38484848	+	804.513916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	65441.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27678574-2	chr2	27678074	27679074	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	1373.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-93674533-2	chr17	93674033	93675033	+	804.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	475365.0	NM_009625	11516.0	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-76644293-3	chr2	76643794	76644794	+	804.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011871, intron 2 of 7)	intron (NM_011871, intron 2 of 7)	3700.0	NM_011871	23992.0	Mm.277250	NM_011871	ENSMUSG00000002731	Prkra	AV120107|PRK|Pact|RAX|lear	protein kinase, interferon inducible double stranded RNA dependent activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64290712-2	chr1	64290212	64291212	+	804.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-169323.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86301410-4	chr17	86300934	86301934	+	804.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	-14256.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	5.5	6.5	11.0	6.0	5.5	4.0
Merged-chr17-28621893-4	chr17	28621390	28622390	+	804.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016795, intron 2 of 15)	CpG	631.0	NM_016795	20815.0	Mm.15252	NM_016795	ENSMUSG00000004865	Srpk1	AU017960	serine/arginine-rich protein specific kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75657858-2	chr11	75657358	75658358	+	804.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008659, exon 3 of 32)	exon (NM_008659, exon 3 of 32)	1843.0	NM_001080775	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-62739839-2	chr5	62739339	62740339	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 2 of 32)	intron (NM_178407, intron 2 of 32)	26338.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132570883-2	chr4	132570383	132571383	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081211, intron 1 of 1)	B2_Mm2|SINE|B2	6816.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109337001-1	chr4	109336501	109337501	+	804.5	f0_balb.idr	intron (NM_007943, intron 12 of 24)	intron (NM_007943, intron 12 of 24)	-6055.0	NM_001159964	13858.0	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165886581-2	chr2	165886106	165887106	+	804.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1768.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	4.5	17.0	11.0	5.0	12.5	11.5
Merged-chr5-38494026-3	chr5	38493534	38494534	+	804.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145559, intron 1 of 10)	ORR1C1|LTR|ERVL-MaLR	8118.0	NM_145559	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	0.0	9.0	9.0	1.5	0.0	2.5
Merged-chr12-36317242-2	chr12	36316772	36317772	+	804.5	f0_balb.idr|f1_balb.idr	exon (NM_025312, exon 2 of 2)	exon (NM_025312, exon 2 of 2)	3103.0	NM_025312	66042.0	Mm.43375	NM_025312	ENSMUSG00000036169	Sostdc1	0610006G05Rik|Sostl|USAG-1|Wise|ectodin	sclerostin domain containing 1	protein-coding	0.5	2.0	3.0	7.0	3.5	1.5
Merged-chr16-91885683-2	chr16	91885183	91886183	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	45947.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.5	0.0	0.0	0.0	1.5
Merged-chr2-19632073-2	chr2	19631573	19632573	+	804.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	25824.0	NR_033642	100041244.0	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-99656985-2	chr4	99656485	99657485	+	804.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010425, exon 1 of 1)	exon (NM_010425, exon 1 of 1)	686.0	NM_010425	15221.0	Mm.4758	NM_010425	ENSMUSG00000067261	Foxd3	CWH3|Genesis|Hfh2	forkhead box D3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31215236-3	chr6	31214743	31215743	+	804.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	intron (NR_110469, intron 1 of 3)	3231.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83031624-2	chr15	83031124	83032124	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271411, intron 1 of 5)	intron (NM_001271411, intron 1 of 5)	-1674.0	NM_001271413	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72235499-3	chr6	72234998	72235998	+	804.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153778)	promoter-TSS (NM_153778)	79.0	NM_153778	71093.0	Mm.87449	NM_153778	ENSMUSG00000037621	Atoh8	4933425C05Rik|Hath6|Math6|bHLHa21|okadin	atonal bHLH transcription factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr15-9133341-2	chr15	9132841	9133841	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 2 of 9)	intron (NM_013787, intron 2 of 9)	7113.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-98033076-2	chr3	98032576	98033576	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	19538.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99457833-2	chr10	99457333	99458333	+	804.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-151338.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14242097-2	chr2	14241597	14242597	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 2 of 29)	B1_Mus1|SINE|Alu	12683.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63400261-2	chr9	63399761	63400761	+	804.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1017.0	NM_027090	69478.0	Mm.113942	NM_027090	ENSMUSG00000032403	2300009A05Rik	-	RIKEN cDNA 2300009A05 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119249960-2	chr11	119249460	119250460	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175430, intron 11 of 18)	intron (NM_175430, intron 11 of 18)	-18003.0	NM_001159324	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	0.0	3.0	0.0	0.0	0.0	0.0
Merged-chr1-9697617-2	chr1	9697117	9698117	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008651, intron 1 of 15)	intron (NM_008651, intron 1 of 15)	2592.0	NM_001290397	17864.0	Mm.479	NM_008651	ENSMUSG00000025912	Mybl1	A-myb|G1-419-6|repro9	myeloblastosis oncogene-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116443044-2	chr11	116442544	116443544	+	804.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033267, exon 13 of 14)	exon (NM_001033267, exon 13 of 14)	8831.0	NR_003376	664849.0	Mm.258466	NR_003376		Gm7367	EG664849	1110014K08Rik pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21027345-2	chr9	21026845	21027845	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010493, intron 5 of 6)	intron (NM_010493, intron 5 of 6)	-2028.0	NM_023892	78369.0	Mm.30220	NM_023892	ENSMUSG00000001014	Icam4	1810015M19Rik|Cd242|ICAM-4	intercellular adhesion molecule 4, Landsteiner-Wiener blood group	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-121219355-2	chr6	121218855	121219855	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_017379, intron 1 of 4)	intron (NM_017379, intron 1 of 4)	8621.0	NM_017379	53857.0	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156194352-2	chr2	156193852	156194852	+	804.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-2295.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	8.0	12.0	3.5	12.5	12.0	5.0
Merged-chr5-35751964-2	chr5	35751464	35752464	+	804.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-5916.0	NM_001177697	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	3.5	1.0	1.0	0.0	2.0	2.5
Merged-chr16-11349459-2	chr16	11348959	11349959	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 2 of 20)	intron (NM_028964, intron 2 of 20)	26555.0	NM_028964	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20890980-2	chr9	20890480	20891480	+	804.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_145610, exon 7 of 11)	exon (NM_145610, exon 7 of 11)	2805.0	NM_145610	235036.0	Mm.2930	NM_145610	ENSMUSG00000004100	Ppan	A230087P06Rik|SSF1	peter pan homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73947433-2	chr17	73946933	73947933	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 1 of 35)	intron (NM_011723, intron 1 of 35)	2763.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102290453-3	chr4	102289967	102290967	+	804.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177983, intron 1 of 5)	intron (NM_001177983, intron 1 of 5)	35528.0	NM_019840	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57291574-2	chr17	57291074	57292074	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 1 of 25)	B3A|SINE|B2	12474.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-43379500-2	chr16	43379000	43380000	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	L1_Mus3|LINE|L1	40696.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	0.0	4.0	6.0	13.5	8.0	9.5
Merged-chr19-4067914-2	chr19	4067414	4068414	+	804.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-8467.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-84121019-2	chr6	84120519	84121519	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 30 of 54)	intron (NM_001077694, intron 30 of 54)	101633.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43419230-6	chr4	43418731	43419731	+	804.486084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037709, intron 2 of 11)	intron (NM_001037709, intron 2 of 11)	9903.0	NM_177377	329831.0	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88559346-3	chr5	88558853	88559853	+	804.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4891.0	NM_023054	65961.0	Mm.490364	NM_023054	ENSMUSG00000070697	Utp3	2400011K09Rik|AW557551|C87704|Crl-1|Crl1|Crlz1|Sas10	UTP3 small subunit processome component	protein-coding	1.0	1.0	8.0	9.5	6.5	5.0
Merged-chr3-65318127-4	chr3	65317635	65318635	+	804.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357358, intron 7 of 13)	intron (NM_001357358, intron 7 of 13)	-15450.0	NR_126080	102637797.0	Mm.446731	NR_126080	ENSMUSG00000104093	A330015K06Rik	-	RIKEN cDNA A330015K06 gene	ncRNA	4.5	9.0	11.5	2.5	3.0	1.0
Merged-chr6-134042094-3	chr6	134041597	134042597	+	804.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	6397.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127774126-4	chr7	127773610	127774610	+	804.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198424, exon 2 of 2)	exon (NM_198424, exon 2 of 2)	-3279.0	NM_178029	233904.0	Mm.435494	NM_010940	ENSMUSG00000042308	Setd1a	BC010250|KMT2F|Nsccn1|mKIAA0339|mNSC1	SET domain containing 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-36173217-2	chr8	36172700	36173700	+	804.375	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	17190.0	NR_151736	330738.0	Mm.128075	NR_151736	ENSMUSG00000109704	Gm38414	A230084N10|Gm45568	predicted gene, 38414	ncRNA	5.0	12.5	5.5	13.5	10.0	16.5
Merged-chr9-21153800-3	chr9	21153348	21154348	+	804.366638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3942.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117804845-6	chr10	117804324	117805324	+	804.347229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12119.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	2.0	7.0	10.0	2.0	7.0	7.0
Merged-chr1-74387775-2	chr1	74387275	74388275	+	804.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-3834.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-86758795-3	chr3	86758292	86759292	+	804.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077688, intron 53 of 54)	intron (NM_001077688, intron 53 of 54)	162092.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-68002355-3	chr8	68001854	68002854	+	804.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27780.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150864144-3	chr4	150863642	150864642	+	804.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133753, intron 1 of 3)	intron (NM_133753, intron 1 of 3)	9072.0	NM_133753	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87597638-1	chr6	87597138	87598138	+	804.333313	f0_balb.idr	Intergenic	Intergenic	-6895.0	NM_021381	58182.0	Mm.333226	NM_021381	ENSMUSG00000049409	Prokr1	EG-VEGFR1|Gpr73|Pk-r1|Pkr1	prokineticin receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8238776-1	chr10	8238276	8239276	+	804.333313	f0_balb.idr	intron (NM_177387, intron 7 of 7)	intron (NM_177387, intron 7 of 7)	280049.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94709840-3	chr13	94709318	94710318	+	804.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79125.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21712062-4	chr10	21711547	21712547	+	804.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21202.0	NR_045843	432436.0	Mm.244553	NM_001004162	ENSMUSG00000056716	Gm5420	EG432436	predicted gene 5420	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-10079759-1	chr2	10079259	10080259	+	804.333313	f0_balb.idr	promoter-TSS (NM_025280)	promoter-TSS (NM_025280)	751.0	NM_020615	11949.0	Mm.12677	NM_020615	ENSMUSG00000025781	Atp5c1	1700094F02Rik|Atp5f1c	ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128138562-3	chr7	128138065	128139065	+	804.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021334, intron 14 of 29)	MTEa|LTR|ERVL-MaLR	8997.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28259262-3	chr17	28258747	28259747	+	804.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 2 of 7)	MTD|LTR|ERVL-MaLR	-12461.0	NR_045427	69050.0	Mm.486938	NR_045427	ENSMUSG00000002250	1810013A23Rik	-	RIKEN cDNA 1810013A23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-3077189-2	chr17	3076691	3077691	+	804.25	f0_balb.idr|f1_balb.idr	intron (NR_003519, intron 6 of 7)	intron (NR_003519, intron 6 of 7)	6992.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	0.0	0.0	4.5	0.0	0.0	0.0
Merged-chr1-131085436-4	chr1	131084936	131085936	+	804.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	L2a|LINE|L2	12407.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-132227833-4	chr3	132227334	132228334	+	804.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	142542.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35767600-7	chr16	35766890	35767890	+	804.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	B1_Mus1|SINE|Alu	1966.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	8.0	27.0	6.5	4.5	6.0	7.5
Merged-chr7-127992821-2	chr7	127992321	127993321	+	804.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_023258, exon 3 of 3)	exon (NM_023258, exon 3 of 3)	1046.0	NM_023258	66824.0	Mm.24163	NM_023258	ENSMUSG00000030793	Pycard	9130417A21Rik|Asc|CARD5|TMS-1|TNS1|masc	PYD and CARD domain containing	protein-coding	4.5	1.0	5.0	0.0	5.5	1.0
Merged-chr8-30941273-2	chr8	30940734	30941734	+	804.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-148293.0	NM_025869	66959.0	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding	26.0	33.0	11.5	13.5	6.5	5.0
Merged-chr2-127246274-2	chr2	127245774	127246774	+	804.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_025296, intron 4 of 6)	intron (NM_025296, intron 4 of 6)	1542.0	NM_025296	26371.0	Mm.45179	NM_025296	ENSMUSG00000003662	Ciao1	AW210570|Wdr39	cytosolic iron-sulfur protein assembly 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166445235-2	chr2	166444735	166445735	+	804.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2216.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70717274-2	chr8	70716760	70717760	+	804.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1283.0	NM_001195253	100502950.0	Mm.52981	NM_001195253	ENSMUSG00000095026	Gm3336	100041434|2410018E23Rik	predicted gene 3336	protein-coding	0.0	0.0	0.0	1.0	0.0	5.5
Merged-chr8-33654731-4	chr8	33654365	33655365	+	804.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010344, intron 1 of 12)	intron (NM_010344, intron 1 of 12)	1627.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	73.5	170.0	162.0	41.5	100.5	112.5
Merged-chr11-46837534-2	chr11	46837034	46838034	+	804.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_178759, intron 6 of 8)	intron (NM_178759, intron 6 of 8)	26735.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-24534324-4	chr12	24533820	24534820	+	804.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020614, intron 8 of 14)	intron (NM_020614, intron 8 of 14)	35739.0	NR_028341	21340.0	Mm.39082	NM_020614	ENSMUSG00000059669	Taf1b	4930408G01Rik|A230108M10Rik|TAFI68|Tafi86|p63	TATA-box binding protein associated factor, RNA polymerase I, B	protein-coding	10.0	21.5	21.0	8.5	22.5	19.0
Merged-chr3-153293060-1	chr3	153292560	153293560	+	804.200012	f0_balb.idr	intron (NM_011372, intron 3 of 4)	intron (NM_011372, intron 3 of 4)	5589.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77680248-3	chr11	77679738	77680738	+	804.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-5901.0	NM_001024205	68564.0	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172357683-4	chr1	172357141	172358141	+	804.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	16431.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	8.5	11.5	23.0	3.0	11.5	23.0
Merged-chr11-119043998-2	chr11	119043498	119044498	+	804.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3085.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3999391-3	chr19	3998874	3999874	+	804.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011533, exon 8 of 8)	3' UTR (NM_011533, exon 8 of 8)	-1206.0	NM_025529	66387.0	Mm.259222	NM_025529	ENSMUSG00000110949	Nudt8	2310039H17Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145190717-2	chr7	145190221	145191221	+	804.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_132643, intron 20 of 22)	B4A|SINE|B4	17398.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr13-60746061-2	chr13	60745561	60746561	+	804.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 19 of 26)	RSINE1|SINE|B4	40303.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91868688-2	chr16	91868188	91869188	+	804.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 27 of 28)	intron (NM_001110275, intron 27 of 28)	62942.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-34778021-3	chr14	34777527	34778527	+	804.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42109.0	NM_008166	14803.0	Mm.121569	NM_008166	ENSMUSG00000041078	Grid1	GluD1|GluRdelta1	glutamate receptor, ionotropic, delta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121294403-3	chr3	121293906	121294906	+	804.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155539, intron 1 of 2)	B2_Mm2|SINE|B2	2666.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	0.0	7.0	0.0	11.5	1.5	0.0
Merged-chr18-61122766-3	chr18	61122249	61123249	+	804.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 11 of 21)	Lx8|LINE|L1	5281.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64929253-2	chr13	64928752	64929752	+	804.083374	f0_balb.idr|f1_balb.idr	Intergenic	MurERV4-int|LTR|ERVK	11846.0	NM_030047	78124.0	Mm.342895	NM_030047	ENSMUSG00000056223	Spata31	4930458L03Rik|Aep1|Fam75a|Spata31a|Vad1.3	spermatogenesis associated 31	protein-coding	0.0	7.5	1.0	0.0	3.5	4.0
Merged-chr16-25038199-2	chr16	25037699	25038699	+	804.083313	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B2|LTR|ERVK	-21440.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58740508-3	chr1	58739964	58740964	+	804.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 6 of 8)	intron (NM_001355056, intron 6 of 8)	9912.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-115150889-6	chr13	115150410	115151410	+	804.055542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48946.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	6.0	17.5	5.5	6.0	17.5	6.0
Merged-chr8-123235684-4	chr8	123235195	123236195	+	804.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001357300, exon 1 of 2)	exon (NM_001357300, exon 1 of 2)	563.0	NM_001357301	78779.0	Mm.41459	NM_030176	ENSMUSG00000033594	Spata2l	2610039E05Rik|AI648233	spermatogenesis associated 2-like	protein-coding	12.0	48.5	45.5	8.5	47.0	39.5
Merged-chr5-96922845-4	chr5	96922293	96923293	+	804.016663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131152, intron 2 of 2)	GA-rich|Low_complexity|Low_complexity	1521.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	52.0	108.0	86.5	91.5	114.0	86.5
Merged-chr11-116070379-2	chr11	116069879	116070879	+	804.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001009573, intron 14 of 32)	intron (NM_001009573, intron 14 of 32)	7582.0	NM_001009573	70450.0	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr15-8712284-2	chr15	8711784	8712784	+	804.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1477.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4910048-1	chr18	4909548	4910548	+	804.0	f0_balb.idr	Intergenic	LTR40b|LTR|ERVL	97562.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	3.5	9.5	5.5	2.0	1.5	13.5
Merged-chr2-165906734-2	chr2	165906234	165907234	+	804.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-21896.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	1.5	0.0	0.5	1.5	0.0	0.5
Merged-chr17-10322083-2	chr17	10321583	10322583	+	804.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_037588)	TTS (NR_037588)	2164.0	NR_037588	100526796.0	Mm.384135	NR_037588		Cahm	B930003M22Rik	colon adenocarcinoma hypermethylated RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-47248446-3	chr4	47247947	47248947	+	804.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 4 of 39)	intron (NM_009928, intron 4 of 39)	40435.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181367004-1	chr2	181366504	181367504	+	804.0	f1_c57bl6.idr	intron (NM_001048148, intron 1 of 5)	intron (NM_001048148, intron 1 of 5)	1581.0	NM_001048148	229007.0	Mm.87720	NM_144894	ENSMUSG00000027582	Zgpat	1500006I01Rik|BC021513	zinc finger, CCCH-type with G patch domain	protein-coding	0.0	0.5	0.0	0.0	0.5	0.0
Merged-chr8-56767352-1	chr8	56766852	56767852	+	804.0	f0_balb.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	216218.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	2.5	5.0	7.0	2.5	2.5	8.5
Merged-chr16-91533714-2	chr16	91533050	91534050	+	804.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6006.0	NR_105786	102465190.0		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	0.0	0.0	1.5	0.0	0.0	1.5
Merged-chr2-30206540-2	chr2	30206040	30207040	+	804.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356474)	promoter-TSS (NM_001356474)	-693.0	NM_172404	70266.0	Mm.216089	NM_172404	ENSMUSG00000039648	Kyat1	2010009K05Rik|AI182306|Ccbl1|Gtk|Kat1|KatI	kynurenine aminotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149654914-2	chr4	149654414	149655414	+	804.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105990)	TTS (NR_105990)	653.0	NR_105990	102465983.0		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	0.0	1.0	2.0	0.0	0.0	0.0
Merged-chr6-35537968-2	chr6	35537468	35538468	+	804.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008098, intron 1 of 3)	intron (NM_008098, intron 1 of 3)	1920.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80666228-1	chr10	80665728	80666728	+	804.0	f0_balb.idr	3' UTR (NM_021462, exon 14 of 14)	3' UTR (NM_021462, exon 14 of 14)	-9157.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3504777-3	chr11	3504259	3505259	+	804.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172439)	promoter-TSS (NM_172439)	62.0	NM_172439	170835.0	Mm.24313	NM_172439	ENSMUSG00000034570	Inpp5j	Pib5pa|Pipp	inositol polyphosphate 5-phosphatase J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78279286-3	chr10	78278838	78279838	+	804.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053014, intron 7 of 9)	intron (NM_053014, intron 7 of 9)	-34696.0	NM_001081055	216131.0	Mm.27539	NM_001081055	ENSMUSG00000000374	Trappc10	B230307C21Rik|Gm870|Tmem1|b2b2416Clo|b2b2613Clo	trafficking protein particle complex 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-31385593-2	chr9	31385093	31386093	+	804.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172766)	promoter-TSS (NM_172766)	-599.0	NM_172766	235134.0	Mm.238146	NM_172766	ENSMUSG00000042185	Nfrkb	A530090G11Rik	nuclear factor related to kappa B binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95700500-2	chr16	95700000	95701000	+	804.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1907.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36814741-2	chr1	36814241	36815241	+	804.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 25 of 40)	intron (NM_018872, intron 25 of 40)	35757.0	NM_001289612	22637.0	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50763866-2	chr16	50763366	50764366	+	804.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-19543.0	NR_131006	78639.0	Mm.160109	NR_131005	ENSMUSG00000092276	1700116B05Rik	-	RIKEN cDNA 1700116B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155234262-6	chr4	155233709	155234709	+	804.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11674.0	NM_001357191	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	4.5	6.0	9.0	0.5	14.0	3.5
Merged-chr16-65561629-2	chr16	65561129	65562129	+	804.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026879, intron 1 of 5)	intron (NM_026879, intron 1 of 5)	1068.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77771730-2	chr15	77771230	77772230	+	804.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 26 of 40)	intron (NM_022410, intron 26 of 40)	-14720.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5117111-2	chr2	5116611	5117611	+	804.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20665.0	NM_028804	74186.0	Mm.274715	NM_028804	ENSMUSG00000026676	Ccdc3	2310045O21Rik	coiled-coil domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88005144-4	chr1	88004637	88005637	+	804.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033291, intron 2 of 27)	intron (NM_001033291, intron 2 of 27)	3414.0	NM_001198573	227334.0	Mm.80484	NM_001033291	ENSMUSG00000005501	Usp40	B230215L03Rik|C730029K03	ubiquitin specific peptidase 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3832108-1	chr19	3831608	3832608	+	804.0	f1_c57bl6.idr	Intergenic	Intergenic	-19665.0	NM_001271496	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-98514550-2	chr6	98514050	98515050	+	804.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-171796.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	1.5	0.0	2.5	5.0	2.5	1.0
Merged-chr2-172436436-2	chr2	172435936	172436936	+	804.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER68|LTR|ERVL	-4142.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30240219-2	chr7	30239717	30240717	+	804.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_146186)	TTS (NM_146186)	-3452.0	NM_001289817	381867.0	Mm.483986	NM_001289817	ENSMUSG00000100512	Ovol3	Gm1903|movo3	ovo like zinc finger 3	protein-coding	0.0	0.0	2.0	0.0	1.0	2.0
Merged-chr6-73220945-2	chr6	73220445	73221445	+	804.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164669, intron 1 of 76)	B4A|SINE|B4	686.0	NM_001164669	330355.0	Mm.333166	NM_001164669	ENSMUSG00000052861	Dnah6	9830168K20|A730004I20Rik|Dnahc6|mKIAA1697|mdhc6	dynein, axonemal, heavy chain 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-78856916-2	chr5	78856416	78857416	+	804.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERVK10C-int|LTR|ERVK	1391428.0	NR_131050	69370.0	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-13407474-1	chr2	13406974	13407974	+	804.0	f0_balb.idr	intron (NM_001081084, intron 27 of 66)	intron (NM_001081084, intron 27 of 66)	84402.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-35370289-2	chr6	35369789	35370789	+	804.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39443.0	NR_040526	73409.0	Mm.69443	NR_040526	ENSMUSG00000107341	1700065J11Rik	-	RIKEN cDNA 1700065J11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-36103280-1	chr8	36102780	36103780	+	804.0	f1_balb.idr	exon (NM_172911, exon 3 of 6)	exon (NM_172911, exon 3 of 6)	8452.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	0.0	1.5	1.5	1.0	2.5	0.0
Merged-chr4-62285955-2	chr4	62285455	62286455	+	804.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025286)	promoter-TSS (NM_025286)	-474.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102392590-4	chr15	102392101	102393101	+	804.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-13715.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78614973-1	chr15	78614473	78615473	+	804.0	f1_balb.idr	intron (NM_028195, intron 8 of 12)	intron (NM_028195, intron 8 of 12)	17926.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	7.5	1.5	6.0	3.5	8.0	7.0
Merged-chr17-25272611-2	chr17	25272111	25273111	+	804.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001177609, exon 2 of 8)	5' UTR (NM_001177609, exon 2 of 8)	820.0	NM_001177610	22196.0	Mm.240044	NM_011665	ENSMUSG00000015120	Ube2i	5830467E05Rik|UBC9|Ubce2i|Ubce9	ubiquitin-conjugating enzyme E2I	protein-coding	74.0	160.5	95.5	41.0	106.5	111.5
Merged-chr5-145233673-2	chr5	145233173	145234173	+	804.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028298, intron 2 of 3)	intron (NM_028298, intron 2 of 3)	1914.0	NM_028298	72611.0	Mm.206555	NM_028298	ENSMUSG00000007812	Zfp655	2700038I16Rik|9030409O18Rik|mKIAA4222	zinc finger protein 655	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75774699-2	chr2	75774199	75775199	+	804.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-57478.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5064233-2	chr18	5063733	5064733	+	804.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347449, intron 8 of 30)	intron (NM_001347449, intron 8 of 30)	17644.0	NM_001347449	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-75154786-2	chr5	75154311	75155311	+	804.0	f0_balb.idr|f1_balb.idr	intron (NM_001347719, intron 1 of 15)	intron (NM_001347719, intron 1 of 15)	-1355.0	NM_001083316	18595.0	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	0.5	3.0	0.0	9.0	3.0	0.0
Merged-chr11-34050953-2	chr11	34050453	34051453	+	804.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010696, exon 2 of 21)	exon (NM_010696, exon 2 of 21)	4025.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118813843-2	chr9	118813343	118814343	+	804.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 4 of 13)	intron (NM_001113514, intron 4 of 13)	102151.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-84548751-3	chr7	84548285	84549285	+	804.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045098, intron 1 of 2)	intron (NR_045098, intron 1 of 2)	19831.0	NR_045098	100039239.0	Mm.44882	NR_045098		Gm2115	C77713	predicted gene 2115	ncRNA	0.0	2.0	0.0	2.5	0.0	12.0
Merged-chr1-165935092-2	chr1	165934592	165935592	+	804.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198934)	promoter-TSS (NM_198934)	-144.0	NM_198933	18986.0	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106337114-2	chr8	106336614	106337614	+	804.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021491, intron 1 of 8)	intron (NM_021491, intron 1 of 8)	874.0	NM_021491	58994.0	Mm.23298	NM_021491	ENSMUSG00000031906	Smpd3	4631433G07Rik|AI427456|AW537966|fro|nSMase2	sphingomyelin phosphodiesterase 3, neutral	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102646359-6	chr4	102645839	102646839	+	803.986084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56496.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	6.0	14.5	9.5	3.5	6.5	11.0
Merged-chr2-27751491-2	chr2	27750991	27751991	+	803.983337	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 5 of 9)	intron (NM_001290481, intron 5 of 9)	40908.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39381269-3	chr6	39380804	39381804	+	803.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011226)	promoter-TSS (NM_011226)	-49.0	NM_011226	19331.0	Mm.123866	NM_011226	ENSMUSG00000029923	Rab19	-	RAB19, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35067984-4	chr7	35067482	35068482	+	803.924988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-11416.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83767679-2	chr8	83767173	83768173	+	803.916687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-26362.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	10.0	15.5	6.0	11.5	40.0	23.0
Merged-chr14-62888050-4	chr14	62887550	62888550	+	803.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 2 of 11)	Lx6|LINE|L1	22508.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	31.5	147.0	106.5	59.0	89.0	66.5
Merged-chr8-34865698-4	chr8	34865166	34866166	+	803.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 11 of 26)	intron (NM_175091, intron 11 of 26)	58056.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	2.5	2.5	3.0	1.5	2.5	0.0
Merged-chr7-139224235-2	chr7	139223705	139224705	+	803.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001143755, intron 6 of 8)	intron (NM_001143755, intron 6 of 8)	-10898.0	NM_001162540	57740.0	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	2.5	8.0	4.0	1.0	2.0	10.0
Merged-chr15-77542041-3	chr15	77541532	77542532	+	803.9111330000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8717.0	NM_175391	108956.0	Mm.86391	NM_175391	ENSMUSG00000044309	Apol7c	2210421G13Rik	apolipoprotein L 7c	protein-coding	42.0	49.5	70.0	17.5	21.0	25.0
Merged-chr6-128851310-3	chr6	128850808	128851808	+	803.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254946, intron 2 of 2)	RMER12B|LTR|ERVK	-24993.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	6.5	9.0	5.5	10.0	7.0	6.0
Merged-chr6-43425177-3	chr6	43424706	43425706	+	803.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311111, intron 6 of 7)	intron (NM_001311111, intron 6 of 7)	-17223.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86046196-3	chr1	86045619	86046619	+	803.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001144992, exon 1 of 3)	exon (NM_001144992, exon 1 of 3)	256.0	NM_001144992	72792.0	Mm.54981	NM_001144992	ENSMUSG00000026227	2810459M11Rik	-	RIKEN cDNA 2810459M11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114914253-2	chr11	114913753	114914753	+	803.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20133.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35207707-2	chr2	35207207	35208207	+	803.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-6587.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-117635843-3	chr14	117635344	117636344	+	803.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011821, intron 4 of 8)	B4|SINE|B4	318003.0	NR_105747	102465148.0		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12680789-4	chr13	12680303	12681303	+	803.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30408.0	NR_003568	664862.0	Mm.415635	NR_003568		Gpr137b-ps	2310041G17Rik	G protein-coupled receptor 137B, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17873643-3	chr17	17873106	17874106	+	803.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	10333.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	53.5	86.5	79.5	25.0	71.0	46.5
Merged-chr4-85530070-2	chr4	85529570	85530570	+	803.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	324614.0	NM_019535	20404.0	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding	0.5	2.0	1.5	0.0	2.0	1.5
Merged-chr14-73227319-3	chr14	73226815	73227815	+	803.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 17 of 26)	intron (NM_009029, intron 17 of 26)	-10576.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86041043-4	chr1	86040548	86041548	+	803.829163	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb-int|LTR|ERVL-MaLR	-4815.0	NM_001144993	72792.0	Mm.54981	NM_001144992	ENSMUSG00000026227	2810459M11Rik	-	RIKEN cDNA 2810459M11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75739270-4	chr7	75738757	75739757	+	803.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 29 of 36)	intron (NM_029332, intron 29 of 36)	-109081.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55858696-4	chr16	55858212	55859212	+	803.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134457, intron 4 of 5)	intron (NM_001134457, intron 4 of 5)	-20071.0	NM_001159395	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38297584-6	chr15	38297153	38298153	+	803.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001289471, exon 2 of 5)	exon (NM_001289471, exon 2 of 5)	2247.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40576618-3	chr12	40576141	40577141	+	803.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	130588.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10314492-3	chr17	10313932	10314932	+	803.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021881, intron 1 of 6)	intron (NM_021881, intron 1 of 6)	4929.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-94588282-2	chr15	94587782	94588782	+	803.799988	f1_balb.idr|f1_c57bl6.idr	exon (NM_008971, exon 2 of 9)	exon (NM_008971, exon 2 of 9)	1542.0	NM_008971	19230.0	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19590183-3	chr10	19589727	19590727	+	803.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A|LTR|ERVL	-1722.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	19.0	48.0	24.0	45.0	105.0	47.0
Merged-chr7-36690689-4	chr7	36690187	36691187	+	803.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7431.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	0.0	0.0	0.0	2.0	0.0	0.0
Merged-chr16-31878754-4	chr16	31878246	31879246	+	803.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013900)	promoter-TSS (NM_013900)	-64.0	NM_013900	30060.0	Mm.30988	NM_013900	ENSMUSG00000022780	Meltf	CD228|MTf|Mfi2	melanotransferrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-53627143-4	chr8	53626611	53627611	+	803.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146208, intron 1 of 9)	RLTR25B|LTR|ERVK	11954.0	NM_146208	234258.0	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-53289375-3	chr6	53288880	53289880	+	803.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 1 of 10)	intron (NM_001327821, intron 1 of 10)	2077.0	NM_001327821	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	5.0	9.0	1.5	2.0	13.0	3.0
Merged-chr17-35906562-2	chr17	35906062	35907062	+	803.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347378, intron 6 of 11)	L2a|LINE|L2	3506.0	NM_001142745	73242.0	Mm.273155	NM_028476	ENSMUSG00000024426	Atat1	0610011P08Rik|2610008K08Rik|2610110G12Rik|3110080J08Rik|Mec17|TAT	alpha tubulin acetyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42503605-2	chr10	42503105	42504105	+	803.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_017472, intron 1 of 3)	B1_Mus2|SINE|Alu	1551.0	NM_017472	54198.0	Mm.277870	NM_017472	ENSMUSG00000019804	Snx3	SDP3	sorting nexin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34436500-2	chr1	34436000	34437000	+	803.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027159)	TTS (NM_027159)	3172.0	NM_027159	69668.0	Mm.379170	NM_027159	ENSMUSG00000042111	Ccdc115	2310061I09Rik|Ccp1	coiled-coil domain containing 115	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134745919-2	chr1	134745419	134746419	+	803.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355726, intron 7 of 8)	intron (NM_001355726, intron 7 of 8)	36619.0	NM_001355726	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101410772-2	chr7	101410272	101411272	+	803.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 32 of 33)	intron (NM_001040111, intron 32 of 33)	-10919.0	NM_001008548	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	2.5	3.5	0.5	0.0	0.0	1.5
Merged-chr14-73142445-4	chr14	73141942	73142942	+	803.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170694)	promoter-TSS (NM_001170694)	-68.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44554754-4	chr19	44554252	44555252	+	803.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026061, intron 2 of 4)	intron (NM_026061, intron 2 of 4)	690.0	NM_001347447	67264.0	Mm.2060	NM_026061	ENSMUSG00000025204	Ndufb8	2900010I05Rik|AI987932|CI-ASHI	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36941356-4	chr1	36940845	36941845	+	803.729126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1818.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134144908-3	chr6	134144415	134145415	+	803.722229	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_001303102, intron 3 of 8)	ORR1F|LTR|ERVL-MaLR	109215.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	10.5	6.5	13.5	0.0	10.5	5.0
Merged-chr8-71271872-3	chr8	71271362	71272362	+	803.716675	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142323)	promoter-TSS (NM_001142323)	728.0	NM_001163042	76478.0	Mm.27355	NM_029621	ENSMUSG00000035439	Haus8	2410004L22Rik|Hice1	4HAUS augmin-like complex, subunit 8	protein-coding	16.5	20.0	24.0	28.5	35.0	27.5
Merged-chr9-13559040-4	chr9	13558562	13559562	+	803.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60927.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94553178-3	chr10	94552623	94553623	+	803.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359760, intron 1 of 3)	intron (NM_001359760, intron 1 of 3)	2203.0	NM_001359760	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51615350-3	chr11	51614852	51615852	+	803.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4421.0	NM_026631	52530.0	Mm.28203	NM_026631	ENSMUSG00000001056	Nhp2	2410130M07Rik|D11Ertd175e|Nola2	NHP2 ribonucleoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128762746-3	chr2	128762270	128763270	+	803.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 8 of 18)	MTD|LTR|ERVL-MaLR	-55533.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	3.0	3.5	18.0	3.5	2.5	5.5
Merged-chr2-102795245-3	chr2	102794738	102795738	+	803.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48478.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108527640-3	chr6	108527156	108528156	+	803.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 60 of 61)	intron (NM_010585, intron 60 of 61)	37913.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.0	4.0	0.0	2.5	8.0	7.5
Merged-chr16-92822276-3	chr16	92821767	92822767	+	803.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	3807.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-33931773-4	chr8	33931271	33932271	+	803.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1908.0	NM_001042675	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	9.0	19.0	28.5	10.0	9.5	13.5
Merged-chr19-40740240-2	chr19	40739740	40740740	+	803.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009848, exon 10 of 10)	3' UTR (NM_009848, exon 10 of 10)	80470.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6387211-2	chr15	6386711	6387711	+	803.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	463.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170169347-3	chr2	170168852	170169852	+	803.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26677.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11599636-4	chr2	11599136	11600136	+	803.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152824, intron 2 of 11)	intron (NM_152824, intron 2 of 11)	3563.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32146677-4	chr12	32146180	32147180	+	803.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61658.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	3.5	0.5	2.5	0.0	1.0	3.0
Merged-chr8-84738444-3	chr8	84738058	84739058	+	803.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081982, intron 2 of 9)	intron (NM_001081982, intron 2 of 9)	35811.0	NM_001081981	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	0.0	8.0	4.5	6.0	5.5	5.0
Merged-chr4-97663022-3	chr4	97662540	97663540	+	803.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-78449.0	NR_015513	319865.0	Mm.373807	NM_177023		E130114P18Rik	-	RIKEN cDNA E130114P18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95780193-8	chr10	95779646	95780646	+	803.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-160517.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	12.0	6.5	11.5	1.5	8.0	10.0
Merged-chr12-101818731-2	chr12	101818233	101819233	+	803.541626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361987)	promoter-TSS (NM_001361987)	-249.0	NM_001361987	23876.0	Mm.288381	NM_011812	ENSMUSG00000021186	Fbln5	A55|DANCE|EVEC	fibulin 5	protein-coding	1.5	2.0	0.5	0.0	0.0	0.0
Merged-chr6-108433042-4	chr6	108432540	108433540	+	803.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 42 of 61)	intron (NM_010585, intron 42 of 61)	-56703.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53241435-2	chr15	53240935	53241935	+	803.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	104748.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-75433434-2	chr9	75432934	75433934	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-8090.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	0.0	2.0	0.0	0.0	2.0	0.0
Merged-chr1-181430239-2	chr1	181429739	181430739	+	803.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028408, intron 3 of 5)	intron (NM_028408, intron 3 of 5)	77611.0	NM_001160211	72978.0	Mm.338083	NM_028408	ENSMUSG00000026514	Cnih3	2900075G08Rik|CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98257627-2	chr12	98257127	98258127	+	803.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008079, intron 1 of 16)	intron (NM_008079, intron 1 of 16)	1832.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146800537-2	chr5	146800037	146801037	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5581.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97939043-2	chr15	97938543	97939543	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25186.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-24871261-2	chr18	24870761	24871761	+	803.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289654, intron 3 of 24)	intron (NM_001289654, intron 3 of 24)	162638.0	NM_001289655	225288.0	Mm.329322	NM_175276	ENSMUSG00000034295	Fhod3	A930009H06Rik|FHOS2|mKIAA1695	formin homology 2 domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89680396-2	chr6	89679896	89680896	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33807.0	NM_053228	113855.0	Mm.377152	NM_053228	ENSMUSG00000096051	Vmn1r40	V1rb7	vomeronasal 1 receptor 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120991924-2	chr4	120991424	120992424	+	803.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	-18602.0	NR_105982	102465614.0		NR_105982	ENSMUSG00000106436	Mir7015	mmu-mir-7015	microRNA 7015	ncRNA	13.0	7.5	6.5	3.5	19.5	12.0
Merged-chr1-7393805-2	chr1	7393305	7394305	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	304885.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24165724-2	chr17	24165220	24166220	+	803.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361533, intron 1 of 2)	intron (NM_001361533, intron 1 of 2)	-1987.0	NM_172935	245847.0	Mm.87319	NM_172935	ENSMUSG00000036820	Amdhd2	5730457F11Rik	amidohydrolase domain containing 2	protein-coding	242.5	628.0	404.0	172.5	441.5	323.0
Merged-chr1-91093682-2	chr1	91093182	91094182	+	803.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 10 of 22)	C-rich|Low_complexity|Low_complexity	40238.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30520713-2	chr16	30520213	30521213	+	803.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357415, intron 10 of 11)	intron (NM_001357415, intron 10 of 11)	29865.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	2.5	7.5	0.0	1.5	7.5	0.5
Merged-chr8-111152689-2	chr8	111152189	111153189	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7191.0	NR_040364	434350.0	Mm.442061	NR_040363		9430091E24Rik	-	RIKEN cDNA 9430091E24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-13577386-2	chr2	13576886	13577886	+	803.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011701, intron 2 of 8)	intron (NM_011701, intron 2 of 8)	3075.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-39614108-2	chr4	39613608	39614608	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTTG)n|Simple_repeat|Simple_repeat	163815.0	NM_001081095	75471.0	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr9-110944486-2	chr9	110943986	110944986	+	803.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011562, intron 1 of 5)	B2_Mm2|SINE|B2	1672.0	NM_011562	21667.0	Mm.5090	NM_011562	ENSMUSG00000032494	Tdgf1	CR1|cripto	teratocarcinoma-derived growth factor 1	protein-coding	14.5	1.0	0.0	1.5	0.0	1.0
Merged-chr3-95017127-2	chr3	95016627	95017627	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1670.0	NM_001357863	78266.0	Mm.389478	NM_030074	ENSMUSG00000019338	Zfp687	4931408L03Rik|Znf687|mKIAA1441	zinc finger protein 687	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70757767-2	chr8	70757267	70758267	+	803.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_183170)	TTS (NM_183170)	3088.0	NM_001166399	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141950167-2	chr7	141949667	141950667	+	803.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001276763, exon 1 of 20)	exon (NM_001276763, exon 1 of 20)	416.0	NM_001009929	75770.0	Mm.274868	NM_029426	ENSMUSG00000053046	Brsk2	4833424K13Rik|SAD-A|SADA	BR serine/threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90042490-2	chr9	90041990	90042990	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-11777.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	11.5	57.5	24.5	23.0	25.5	24.0
Merged-chr6-124831476-2	chr6	124830976	124831976	+	803.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013538, exon 3 of 6)	exon (NM_013538, exon 3 of 6)	1300.0	NM_013538	14793.0	Mm.285723	NM_013538	ENSMUSG00000023505	Cdca3	2410005A12Rik|C8|Grcc8|Tome-1	cell division cycle associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-100310535-2	chr8	100310035	100311035	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	893861.0	NR_132435	234624.0	Mm.124595	NM_175479	ENSMUSG00000052479	A330008L17Rik	-	RIKEN cDNA A330008L17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9871834-2	chr13	9871334	9872334	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	-106513.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101843999-2	chr5	101843499	101844499	+	803.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 66 of 66)	intron (NM_172882, intron 66 of 66)	78869.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	4.0	2.0	1.0	4.0	0.0	2.0
Merged-chr19-21269133-1	chr19	21268633	21269633	+	803.5	f1_balb.idr	Intergenic	Intergenic	-3145.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	3.5	3.0	1.5	2.0	0.0	2.5
Merged-chr15-97591522-2	chr15	97591022	97592022	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114300.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50538026-3	chr16	50537518	50538518	+	803.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040379, intron 2 of 5)	intron (NR_040379, intron 2 of 5)	9516.0	NR_040379	619312.0	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166078247-2	chr2	166077747	166078747	+	803.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252579, intron 17 of 20)	intron (NM_001252579, intron 17 of 20)	77038.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101160849-2	chr15	101160385	101161385	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13187.0	NM_007395	11479.0	Mm.308467	NM_007395	ENSMUSG00000000532	Acvr1b	6820432J04|ALK-4|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding	0.0	6.5	7.0	0.0	8.5	6.0
Merged-chr13-100103485-2	chr13	100102985	100103985	+	803.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081061, intron 1 of 38)	intron (NM_001081061, intron 1 of 38)	585.0	NM_001081061	544971.0	Mm.288546	NM_001081061	ENSMUSG00000049658	Bdp1	AI662220|AW049390|AW456745|B130055N23Rik|G630013P12Rik|TAF3B1|TFC5|TFIIIB150|TFIIIB90|Tfnr|mKIAA1241	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-129727067-2	chr5	129726567	129727567	+	803.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008095, intron 1 of 9)	intron (NM_008095, intron 1 of 9)	1992.0	NM_008095	14467.0	Mm.12468	NM_008095	ENSMUSG00000029432	Nipsnap2	AV006093|Gbas	nipsnap homolog 2	protein-coding	1.0	4.5	2.0	5.0	2.5	0.0
Merged-chr15-38527341-2	chr15	38526841	38527841	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8075.0	NM_018745	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-102686497-2	chr13	102685997	102686997	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-7050.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90709019-2	chr5	90708519	90709519	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50279.0	NM_009141	20311.0	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-40038082-2	chr1	40037582	40038582	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	-46632.0	NM_010555	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-33068396-3	chr13	33067951	33068951	+	803.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-15652.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11427480-2	chr2	11426980	11427980	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28980.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8846909-2	chr4	8846409	8847409	+	803.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 20 of 36)	intron (NM_001355382, intron 20 of 36)	95585.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23824990-2	chr17	23824490	23825490	+	803.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175229)	TTS (NM_175229)	1699.0	NR_039586	100628593.0		NR_039586	ENSMUSG00000092981	Mir5125	mmu-mir-5125|mu-mir-5125	microRNA 5125	ncRNA	4.5	13.0	18.5	11.5	10.5	1.5
Merged-chr13-14034113-2	chr13	14033613	14034613	+	803.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178337, intron 1 of 16)	intron (NM_178337, intron 1 of 16)	5525.0	NR_130788	70430.0	Mm.260209	NM_178337	ENSMUSG00000039233	Tbce	2610206D02Rik|C530005D02Rik|pmn	tubulin-specific chaperone E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85770390-2	chr1	85769890	85770890	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4881.0	NR_108086	77762.0	Mm.434298	NR_108086	ENSMUSG00000100217	9930111H07Rik	-	RIKEN cDNA 9930111H07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51521677-4	chr10	51521190	51522190	+	803.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	SSU-rRNA_Hsa|rRNA|rRNA	30792.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25557260-2	chr15	25556760	25557760	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65290.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23747871-2	chr17	23747270	23748270	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1466.0	NR_015472	638247.0	Mm.382600	NR_015472	ENSMUSG00000097006	9530082P21Rik	E030034P13Rik	RIKEN cDNA 9530082P21 gene	ncRNA	7.5	7.5	6.0	12.0	4.5	7.0
Merged-chr12-98267059-2	chr12	98266559	98267559	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1576.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-94851903-3	chr3	94851403	94852403	+	803.483337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165948, intron 1 of 18)	intron (NM_001165948, intron 1 of 18)	14336.0	NM_172683	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	7.0	3.5	9.0	8.0	7.0	11.5
Merged-chr19-28834901-3	chr19	28834362	28835362	+	803.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009199)	promoter-TSS (NM_009199)	-304.0	NM_009199	20510.0	Mm.246670	NM_009199	ENSMUSG00000024935	Slc1a1	D130048G10Rik|EAAC1|EAAC2|EAAT3|MEAAC1	solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137864203-4	chr5	137863705	137864705	+	803.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6156.0	NM_133209	170741.0	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113736469-4	chr5	113735972	113736972	+	803.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001010825, intron 1 of 2)	intron (NM_001010825, intron 1 of 2)	690.0	NM_001010825	231630.0	Mm.21926	NM_001010825	ENSMUSG00000053334	Ficd	D5Ertd40e|Hype	FIC domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111843670-4	chr12	111843153	111844153	+	803.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011625, exon 7 of 17)	exon (NM_011625, exon 7 of 17)	29483.0	NM_026752	68520.0	Mm.390497	NM_026752	ENSMUSG00000021286	Zfyve21	1110013H04Rik|AW558780|C85416	zinc finger, FYVE domain containing 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89285429-4	chr3	89284949	89285949	+	803.424988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4498.0	NM_001162425	13636.0	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27414564-3	chr2	27414050	27415050	+	803.422241	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	13058.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95704234-3	chr11	95703726	95704726	+	803.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045780, intron 1 of 1)	MLT1D|LTR|ERVL-MaLR	8528.0	NR_045780	432396.0	Mm.426849	NR_045780	ENSMUSG00000086191	Zfp652os	1110035M17Rik	zinc finger protein 652, opposite strand	ncRNA	0.0	3.5	4.0	2.0	2.0	5.5
Merged-chr4-108339611-3	chr4	108339143	108340143	+	803.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027250, exon 3 of 3)	3' UTR (NM_027250, exon 3 of 3)	11491.0	NM_027250	69893.0	Mm.28354	NM_027250	ENSMUSG00000048351	Coa7	2010305A19Rik|AI451324|D4Ertd796e|Selrc1	cytochrome c oxidase assembly factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-68843535-4	chr2	68843029	68844029	+	803.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17912.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143465554-4	chr5	143465061	143466061	+	803.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 1 of 14)	ID_B1|SINE|B4	1068.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141790064-2	chr4	141789606	141790606	+	803.416626	f0_balb.idr|f1_c57bl6.idr	intron (NM_172338, intron 1 of 14)	intron (NM_172338, intron 1 of 14)	538.0	NM_172338	214063.0	Mm.39102	NM_172338	ENSMUSG00000040697	Dnajc16	2900037O03Rik|4732437J24Rik|D030060M24|mKIAA0962	DnaJ heat shock protein family (Hsp40) member C16	protein-coding	116.0	193.0	170.0	123.5	224.5	167.0
Merged-chr17-24722795-3	chr17	24722352	24723352	+	803.402771	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008503)	TTS (NM_008503)	1536.0	NM_026684	68342.0	Mm.1129	NM_026684	ENSMUSG00000040048	Ndufb10	0610011B04Rik|22kDa|PDSW	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10	protein-coding	13.0	28.0	21.5	6.5	18.0	15.0
Merged-chr4-128621526-4	chr4	128621048	128622048	+	803.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2929.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87176251-3	chr17	87175744	87176744	+	803.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18698.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	9.5	18.0	9.0	3.5	1.5	2.0
Merged-chr11-118494758-3	chr11	118494243	118495243	+	803.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024931, intron 13 of 14)	intron (NM_001024931, intron 13 of 14)	17911.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42903266-3	chr10	42902745	42903745	+	803.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359265, intron 1 of 6)	intron (NM_001359265, intron 1 of 6)	42733.0	NM_001359264	268297.0	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	Scm polycomb group protein like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-97657356-4	chr1	97656857	97657857	+	803.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133825, intron 1 of 2)	MTC|LTR|ERVL-MaLR	4319.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126117056-3	chr7	126116533	126117533	+	803.366638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 14 of 23)	intron (NM_028816, intron 14 of 23)	-34622.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147918704-2	chr4	147918204	147919204	+	803.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011122, intron 14 of 18)	intron (NM_011122, intron 14 of 18)	-13795.0	NM_001285921	170731.0	Mm.154312	NM_133201	ENSMUSG00000029020	Mfn2	D630023P19Rik|Fzo	mitofusin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80833302-2	chr7	80832801	80833801	+	803.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28807.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	39.0	38.0	21.0	34.5	73.0	34.0
Merged-chr17-69086256-2	chr17	69085756	69086756	+	803.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355732, intron 1 of 21)	intron (NM_001355732, intron 1 of 21)	10579.0	NM_001355732	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	6.5	14.5	1.0	6.5	15.0	1.0
Merged-chr15-30513006-3	chr15	30512481	30513481	+	803.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	340388.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-43950165-3	chr16	43949670	43950670	+	803.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027801, intron 12 of 15)	intron (NM_027801, intron 12 of 15)	28880.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40431748-3	chr12	40431236	40432236	+	803.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172575, intron 1 of 12)	RMER6B|LTR|ERVK	14054.0	NM_172575	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64060204-3	chr7	64059699	64060699	+	803.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93636.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75336876-2	chr11	75336376	75337376	+	803.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_026653, intron 4 of 16)	MTEa|LTR|ERVL-MaLR	11507.0	NM_001164223	68275.0	Mm.102574	NM_026653	ENSMUSG00000000751	Rpa1	5031405K23Rik|70kDa|AA589576|AW557552|RF-A|RP-A|Rpa	replication protein A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35043133-3	chr9	35042637	35043637	+	803.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER47B|DNA|TcMar-Tigger	-73591.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0.5	5.5	2.5	0.0	0.0	4.0
Merged-chr10-127554809-2	chr10	127554309	127555309	+	803.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 56 of 88)	intron (NM_008512, intron 56 of 88)	-20250.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.0	0.0	0.0	0.0	2.0	2.0
Merged-chr14-70792826-3	chr14	70792326	70793326	+	803.283325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18445.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	7.5	21.0	8.0	13.0	17.5	14.0
Merged-chr18-20888185-3	chr18	20887692	20888692	+	803.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177038, intron 1 of 28)	MTEa-int|LTR|ERVL-MaLR	7886.0	NM_029491	75964.0	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127207586-3	chr7	127207078	127208078	+	803.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144522, exon 1 of 9)	exon (NM_144522, exon 1 of 9)	890.0	NM_144522	68449.0	Mm.41420	NM_144522	ENSMUSG00000042492	Tbc1d10b	1110003P22Rik|C87963	TBC1 domain family, member 10b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-161041431-3	chr2	161040927	161041927	+	803.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126509, intron 4 of 35)	intron (NR_126509, intron 4 of 35)	67659.0	NM_173368	71389.0	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-142610812-4	chr2	142610322	142611322	+	803.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	290642.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-60633287-2	chr8	60632787	60633787	+	803.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293769, intron 1 of 1)	CpG	462.0	NM_001293769	71306.0	Mm.23242	NM_027756	ENSMUSG00000031647	Mfap3l	4933428A15Rik|5430405D20Rik|AI461995|AW125052|NYD-sp9|mKIAA0626	microfibrillar-associated protein 3-like	protein-coding	3.5	0.0	0.0	4.0	0.0	0.0
Merged-chr3-40948754-2	chr3	40948254	40949254	+	803.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1877.0	NM_001040399	214048.0	Mm.46782	NM_027663	ENSMUSG00000025762	Larp1b	1700108L22Rik|4933421B21Rik|AA690246|Larp2	La ribonucleoprotein domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139024067-4	chr5	139023580	139024580	+	803.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359099, intron 9 of 10)	intron (NM_001359099, intron 9 of 10)	-29127.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155531095-2	chr1	155530595	155531595	+	803.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR101_Mam|LTR|ERVL	-3984.0	NR_132128	433367.0	Mm.359304	NR_132128	ENSMUSG00000073535	Gm5532	EG433367	predicted gene 5532	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5600738-2	chr17	5600238	5601238	+	803.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	108138.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-52292141-4	chr12	52291620	52292620	+	803.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029760, intron 8 of 10)	intron (NM_029760, intron 8 of 10)	188489.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	0.5	3.0	0.5	0.0	1.0	4.0
Merged-chr4-12498643-3	chr4	12498150	12499150	+	803.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-326635.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37619447-3	chr13	37618956	37619956	+	803.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-206582.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.5	2.5	3.5	4.5	1.0	6.0
Merged-chr3-55103787-4	chr3	55103330	55104330	+	803.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-8278.0	NM_001144988	229285.0	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|Spart|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding	0.0	0.0	1.0	0.0	2.0	4.5
Merged-chr3-27629626-4	chr3	27629106	27630106	+	803.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 3 of 26)	intron (NM_001356953, intron 3 of 26)	-44611.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84533511-5	chr10	84532990	84533990	+	803.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175451, exon 1 of 2)	exon (NM_175451, exon 1 of 2)	398.0	NM_175451	216197.0	Mm.334999	NM_175451	ENSMUSG00000046841	Ckap4	5630400A09Rik|CLIMP-63|P63	cytoskeleton-associated protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142622525-2	chr3	142622025	142623025	+	803.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_010260, intron 1 of 10)	L1M2|LINE|L1	1421.0	NR_105802	102465200.0		NR_105802	ENSMUSG00000098871	Mir6381	Gm27963|mmu-mir-6381	microRNA 6381	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-79499965-3	chr7	79499422	79500422	+	803.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040311)	promoter-TSS (NR_040311)	-104.0	NR_040311	101694.0	Mm.41661	NR_040311	ENSMUSG00000097023	Mir9-3hg	AI854517	Mir9-3 host gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129491880-2	chr4	129491380	129492380	+	803.166687	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001085491)	TTS (NM_001085491)	690.0	NM_001085491	68233.0	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-31127584-3	chr7	31127085	31128085	+	803.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011322)	promoter-TSS (NM_011322)	-562.0	NM_011322	20266.0	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	8.5	27.0	25.0	9.5	25.0	25.5
Merged-chr7-49001743-3	chr7	49001263	49002263	+	803.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	42690.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11461528-2	chr8	11461028	11462028	+	803.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-16401.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85759016-3	chr12	85758525	85759525	+	803.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145447, intron 1 of 9)	intron (NM_145447, intron 1 of 9)	12486.0	NM_145447	217721.0	Mm.301076	NM_145447	ENSMUSG00000034258	Flvcr2	CCT|Mfsd7c	feline leukemia virus subgroup C cellular receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34023217-2	chr17	34022788	34023788	+	803.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009066, intron 3 of 6)	intron (NM_009066, intron 3 of 6)	1392.0	NM_009066	19763.0	Mm.20343	NM_009066	ENSMUSG00000024325	Ring1	Ring1A	ring finger protein 1	protein-coding	5.5	0.0	0.0	7.5	10.0	10.5
Merged-chr11-107311011-2	chr11	107310511	107311511	+	803.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	intron (NR_153311, intron 4 of 9)	-121630.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65960343-2	chr18	65959846	65960846	+	803.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145493, intron 2 of 2)	intron (NM_145493, intron 2 of 2)	9832.0	NM_145493	225644.0	Mm.192285	NM_145493	ENSMUSG00000024519	Cplx4	A930004D23Rik|CPXIV|Gm957	complexin 4	protein-coding	0.0	0.0	2.0	0.0	2.5	0.0
Merged-chr8-25043634-4	chr8	25043132	25044132	+	803.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_031257, exon 11 of 12)	exon (NM_031257, exon 11 of 12)	-4670.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	0.0	17.0	4.0	0.0	5.0	0.0
Merged-chr1-106815033-2	chr1	106814537	106815537	+	803.166626	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-18312.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107535367-2	chr9	107534867	107535867	+	803.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019704, intron 1 of 1)	intron (NM_019704, intron 1 of 1)	1422.0	NM_019704	56395.0	Mm.260153	NM_019704	ENSMUSG00000010045	Tmem115	C78915|Pl6|Pp6	transmembrane protein 115	protein-coding	1.5	3.5	3.0	3.0	2.0	2.5
Merged-chr14-74939535-4	chr14	74939043	74940043	+	803.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	8334.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54535144-4	chr11	54534647	54535647	+	803.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 1 of 28)	intron (NM_001252494, intron 1 of 28)	12302.0	NM_001252496	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91362862-3	chr16	91362389	91363389	+	803.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9894.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110004659-3	chr7	110004156	110005156	+	803.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037959, intron 1 of 2)	MIR|SINE|MIR	1990.0	NR_037959	69781.0	Mm.440728	NR_037959	ENSMUSG00000101585	1600010M07Rik	-	RIKEN cDNA 1600010M07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71295443-2	chr8	71294943	71295943	+	803.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	22729.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	8.5	27.5	13.0	4.5	29.5	19.5
Merged-chr9-49483569-3	chr9	49483026	49484026	+	803.0888669999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172770, intron 2 of 21)	intron (NM_172770, intron 2 of 21)	2699.0	NM_172770	235330.0	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding	0.0	6.5	0.5	10.5	0.0	6.5
Merged-chr1-132298818-4	chr1	132298283	132299283	+	803.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_144810, exon 1 of 5)	5' UTR (NM_144810, exon 1 of 5)	157.0	NM_144810	213417.0	Mm.39723	NM_144810	ENSMUSG00000042115	Klhdc8a	A630065K24Rik	kelch domain containing 8A	protein-coding	6.0	2.0	0.0	6.0	2.0	0.0
Merged-chr14-63130012-6	chr14	63129490	63130490	+	803.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	7528.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-60855281-3	chr15	60854784	60855784	+	803.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30204.0	NM_001162926	399603.0	Mm.411968	NM_207269	ENSMUSG00000072568	Fam84b	BF642811|D330050I23Rik	family with sequence similarity 84, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107782828-3	chr13	107782319	107783319	+	803.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 3 of 14)	intron (NM_145456, intron 3 of 14)	95422.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36502492-2	chr16	36501992	36502992	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013803, intron 4 of 6)	intron (NM_013803, intron 4 of 6)	-47100.0	NM_025288	20863.0	Mm.136573	NM_025288	ENSMUSG00000054905	Stfa3	Stf3	stefin A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102508548-2	chr14	102508048	102509048	+	803.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	474084.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100701871-2	chr11	100701371	100702371	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030150, intron 5 of 12)	intron (NM_030150, intron 5 of 12)	2400.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60666084-3	chr13	60665594	60666594	+	803.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	63883.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	1.0	1.0	13.5	2.0	3.5	7.5
Merged-chr1-74290420-2	chr1	74289920	74290920	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027154, intron 10 of 11)	intron (NM_027154, intron 10 of 11)	5386.0	NM_001039509	56695.0	Mm.384726	NM_019999	ENSMUSG00000026179	Pnkd	2210013N15Rik|2810403H05Rik|AI854243|Brp17|MNCb-5687|MR-1|Tahccp2	paroxysmal nonkinesiogenic dyskinesia	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34514892-2	chr5	34514392	34515392	+	803.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139064)	promoter-TSS (NM_139064)	-913.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108936187-1	chr9	108935687	108936687	+	803.0	f0_c57.idr	promoter-TSS (NM_025407)	promoter-TSS (NM_025407)	-461.0	NM_025407	22273.0	Mm.335460	NM_025407	ENSMUSG00000025651	Uqcrc1	1110032G10Rik	ubiquinol-cytochrome c reductase core protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-31122463-2	chr8	31121933	31122933	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175136, intron 2 of 5)	intron (NM_175136, intron 2 of 5)	10587.0	NM_175136	68867.0	Mm.29532	NM_175136	ENSMUSG00000039328	Rnf122	1110063C11Rik	ring finger protein 122	protein-coding	1.0	10.5	1.0	0.0	4.0	6.0
Merged-chr17-23553213-2	chr17	23552713	23553713	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_126484, intron 1 of 1)	intron (NR_126484, intron 1 of 1)	2414.0	NR_126484	320020.0	Mm.445111	NR_126484		6330415G19Rik	-	RIKEN cDNA 6330415G19 gene	ncRNA	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26269115-2	chr17	26268615	26269615	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028190, intron 5 of 9)	B2_Mm2|SINE|B2	16205.0	NR_037905	66978.0	Mm.440216	NM_025881	ENSMUSG00000024188	Luc7l	1810045C04Rik|2410018D03Rik	Luc7-like	protein-coding	6.5	0.0	0.5	0.0	0.5	1.0
Merged-chr9-118717114-2	chr9	118716614	118717614	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	MTD|LTR|ERVL-MaLR	5422.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	5.0	2.5	0.0	3.0	3.5	0.5
Merged-chr4-59004516-1	chr4	59004016	59005016	+	803.0	f1_balb.idr	intron (NM_001033165, intron 1 of 3)	intron (NM_001033165, intron 1 of 3)	1323.0	NM_001033165	72429.0	Mm.317801	NM_001033165	ENSMUSG00000070972	Dnajc25	2010109C08Rik|2010203O07Rik	DnaJ heat shock protein family (Hsp40) member C25	protein-coding	7.0	3.0	3.5	0.0	0.0	2.5
Merged-chr15-63982763-2	chr15	63982263	63983263	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144846, intron 1 of 11)	intron (NM_144846, intron 1 of 11)	15303.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-137870516-2	chr3	137870050	137871050	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033155, intron 1 of 7)	intron (NM_001033155, intron 1 of 7)	2875.0	NM_001033155	70604.0	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	13.0	1.5	1.0	2.0	5.0	2.0
Merged-chr11-3921692-4	chr11	3921166	3922166	+	803.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130458, intron 8 of 9)	intron (NM_001130458, intron 8 of 9)	-7002.0	NM_153142	103710.0	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20916260-2	chr11	20915760	20916760	+	803.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85152.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	14.5	3.0	10.5	6.0	1.0	12.0
Merged-chr17-36990762-1	chr17	36990262	36991262	+	803.0	f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1258.0	NM_001115075	240095.0	Mm.246609	NM_001115075	ENSMUSG00000024459	H2-M5	CRW2|D130003B22Rik|H-2M5	histocompatibility 2, M region locus 5	protein-coding	0.5	0.0	1.5	0.0	0.5	2.5
Merged-chr11-8608095-2	chr11	8607595	8608595	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	B1F1|SINE|Alu	56440.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97781235-2	chr11	97780735	97781735	+	803.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_028078)	TTS (NR_028078)	531.0	NR_028078	100302498.0	Mm.453536	NR_028078	ENSMUSG00000064901	Snora21	MBI-3	small nucleolar RNA, H/ACA box 21	snoRNA	8.0	10.5	4.5	10.5	16.5	9.0
Merged-chr4-126131499-2	chr4	126130999	126131999	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 6 of 10)	intron (NM_028800, intron 6 of 10)	-16504.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84666225-2	chr8	84665725	84666725	+	803.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3373.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	1.0	4.0	3.0	1.0	4.5	2.5
Merged-chr13-100552206-2	chr13	100551706	100552706	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360536, intron 1 of 8)	CpG	292.0	NM_008756	18260.0	Mm.4807	NM_008756	ENSMUSG00000021638	Ocln	AI503564|Ocl	occludin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-140159272-1	chr4	140158772	140159772	+	803.0	f1_c57bl6.idr	intron (NM_198610, intron 1 of 9)	RMER5|LTR|ERV1	16399.0	NR_153821	102636673.0	Mm.449180	NR_153821		Gm13029	Gm33676	predicted gene 13029	ncRNA	16.0	46.0	54.0	6.5	4.0	3.5
Merged-chr11-106173382-2	chr11	106172882	106173882	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252449, intron 3 of 10)	intron (NM_001252449, intron 3 of 10)	-12653.0	NM_001356458	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-135175718-2	chr6	135175277	135176277	+	803.0	f0_balb.idr|f1_balb.idr	Intergenic	B1_Mus2|SINE|Alu	-7562.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	12.0	8.0	4.0	11.5	18.5	5.0
Merged-chr11-85841504-2	chr11	85841004	85842004	+	803.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009324, exon 7 of 7)	3' UTR (NM_009324, exon 7 of 7)	8889.0	NM_009324	21385.0	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-82795495-4	chr1	82794998	82795998	+	803.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27042.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-130786135-2	chr7	130785635	130786635	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081038, intron 5 of 15)	intron (NM_001081038, intron 5 of 15)	12066.0	NM_001081038	330660.0	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5494085-2	chr19	5493585	5494585	+	803.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007687)	TTS (NM_007687)	3630.0	NM_007687	12631.0	Mm.329655	NM_007687	ENSMUSG00000056201	Cfl1	AA959946|Cof	cofilin 1, non-muscle	protein-coding	3.5	6.0	2.0	8.5	0.0	0.0
Merged-chr1-173941909-3	chr1	173941409	173942409	+	803.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302649, intron 2 of 9)	intron (NM_001302649, intron 2 of 9)	583.0	NM_001302649	15950.0	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Ifi203a|Ifi203b|Mndal	interferon activated gene 203	protein-coding	19.0	34.0	18.0	1.0	0.0	0.5
Merged-chr11-59965406-4	chr11	59964915	59965915	+	803.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009026)	promoter-TSS (NM_009026)	-471.0	NM_009026	19416.0	Mm.3903	NM_009026	ENSMUSG00000049892	Rasd1	Dexras1	RAS, dexamethasone-induced 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61606097-2	chr8	61605595	61606595	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	-14926.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	34.0	62.0	71.5	32.0	60.0	45.0
Merged-chr4-134801470-2	chr4	134800970	134801970	+	803.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33466.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-105218786-1	chr13	105218286	105219286	+	803.0	f0_balb.idr	intron (NM_001360891, intron 5 of 7)	intron (NM_001360891, intron 5 of 7)	74228.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	12.0	15.0	13.0	0.0	17.0	3.0
Merged-chr4-133052596-2	chr4	133052096	133053096	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146155, intron 2 of 6)	intron (NM_146155, intron 2 of 6)	41090.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6446882-2	chr4	6446382	6447382	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 1 of 30)	intron (NM_010945, intron 1 of 30)	7389.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-27646972-2	chr10	27646472	27647472	+	803.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-30030.0	NM_008481	16773.0	Mm.256087	NM_008481	ENSMUSG00000019899	Lama2	5830440B04|dy|mKIAA4087|mer|merosin	laminin, alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126174266-2	chr7	126173766	126174766	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 1 of 23)	intron (NM_028816, intron 1 of 23)	26235.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-41409026-1	chr3	41408526	41409526	+	803.0	f0_balb.idr	Intergenic	Intergenic	84173.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-53792224-2	chr1	53791724	53792724	+	803.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7009.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98951271-2	chr11	98950771	98951771	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009024, intron 2 of 8)	intron (NM_009024, intron 2 of 8)	-9200.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84067864-2	chr8	84067364	84068364	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009055, intron 1 of 20)	intron (NM_009055, intron 1 of 20)	1028.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	21.5	105.0	56.5	27.0	165.5	69.5
Merged-chr12-104990903-3	chr12	104990393	104991393	+	803.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172500, intron 1 of 16)	intron (NM_172500, intron 1 of 16)	7784.0	NM_001042699	212073.0	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	KASH3|nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94020777-3	chr10	94020279	94021279	+	802.972229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304720, intron 1 of 11)	intron (NM_001304720, intron 1 of 11)	14963.0	NM_001304720	215008.0	Mm.124177	NM_172538	ENSMUSG00000036099	Vezt	A630071D13Rik|AI848282	vezatin, adherens junctions transmembrane protein	protein-coding	24.0	49.5	42.0	41.0	43.0	30.0
Merged-chr19-43519729-2	chr19	43519170	43520170	+	802.950012	f1_balb.idr|f1_c57bl6.idr	intron (NM_010324, intron 1 of 8)	intron (NM_010324, intron 1 of 8)	4935.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	3.5	0.0	1.5	0.0	3.5	0.5
Merged-chr9-13575130-4	chr9	13574595	13575595	+	802.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-44894.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	8.0	6.0	17.0	2.5	19.0	14.5
Merged-chr8-126643731-3	chr8	126643253	126644253	+	802.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-50317.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	4.5	3.0	2.0	0.0	1.0	2.0
Merged-chr5-9032823-3	chr5	9032324	9033324	+	802.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-35678.0	NM_023733	74114.0	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding	0.0	1.0	1.0	0.0	1.0	1.0
Merged-chr11-106463234-4	chr11	106462731	106463731	+	802.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 1 of 21)	RSINE1|SINE|B4	24565.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94992277-4	chr10	94991710	94992710	+	802.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47632.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91510447-4	chr6	91509924	91510924	+	802.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009531, intron 2 of 15)	intron (NM_009531, intron 2 of 15)	5464.0	NM_009531	22591.0	Mm.2806	NM_009531	ENSMUSG00000030094	Xpc	-	xeroderma pigmentosum, complementation group C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35349433-4	chr2	35348945	35349945	+	802.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12436.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86300838-4	chr17	86300318	86301318	+	802.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	-13640.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	4.0	3.0	14.0	9.5	6.0	2.0
Merged-chr7-80032261-2	chr7	80031761	80032761	+	802.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	6033.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	1.0	32.0	20.5	13.5	76.5	36.5
Merged-chr7-19229898-2	chr7	19229398	19230398	+	802.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_207525, intron 1 of 1)	B1F1|SINE|Alu	1509.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5291730-3	chr19	5291222	5292222	+	802.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030109, intron 4 of 20)	intron (NM_030109, intron 4 of 20)	3733.0	NM_030109	319322.0	Mm.196532	NM_030109	ENSMUSG00000024853	Sf3b2	145kDa|2610311M13Rik|2810441F20Rik|B230398H18Rik|SAP145|SF3b1|SF3b145|SF3b150	splicing factor 3b, subunit 2	protein-coding	1.0	11.5	4.0	0.5	14.0	4.0
Merged-chr13-37964245-3	chr13	37963748	37964748	+	802.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29960.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	2.5	15.0	9.0	2.0	40.5	23.0
Merged-chr13-91681680-3	chr13	91681180	91682180	+	802.883362	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 9 of 15)	intron (NM_001360776, intron 9 of 15)	-59841.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85849274-4	chr11	85848769	85849769	+	802.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16654.0	NM_009324	21385.0	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123664905-4	chr5	123664420	123665420	+	802.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359224, intron 1 of 18)	intron (NM_001359224, intron 1 of 18)	19441.0	NM_019765	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	1.5	4.5	14.5	9.0	12.0	11.0
Merged-chr4-8844220-2	chr4	8843720	8844720	+	802.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 18 of 36)	intron (NM_001355382, intron 18 of 36)	92896.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-83553038-2	chr9	83552538	83553538	+	802.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	4700.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	24.0	18.0	21.0	20.5	13.5	11.5
Merged-chr6-145793423-4	chr6	145792939	145793939	+	802.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamTip2|DNA|hAT-Tip100	-14944.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99085503-2	chr10	99085003	99086003	+	802.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21579.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69163852-2	chr3	69163352	69164352	+	802.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	32619.0	NR_126533	381452.0	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	7.5	11.5	6.0	7.5	21.0	5.5
Merged-chr8-35826048-2	chr8	35825548	35826548	+	802.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_027998, exon 1 of 1)	exon (NM_027998, exon 1 of 1)	511.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171463336-4	chr1	171462814	171463814	+	802.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172647, exon 10 of 10)	3' UTR (NM_172647, exon 10 of 10)	25753.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	2.0	4.0	2.5	2.0	0.0	5.0
Merged-chr5-125175819-2	chr5	125175319	125176319	+	802.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253905, intron 1 of 42)	intron (NM_001253905, intron 1 of 42)	3395.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87362434-3	chr3	87361956	87362956	+	802.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009690, intron 2 of 5)	Lx8|LINE|L1	4575.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	52.5	59.5	62.5	16.0	41.0	27.0
Merged-chr8-104111969-3	chr8	104111494	104112494	+	802.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 1 of 11)	B3|SINE|B2	-6121.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122918736-3	chr3	122918236	122919236	+	802.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046036, intron 2 of 5)	intron (NR_046036, intron 2 of 5)	5380.0	NR_046036	74057.0	Mm.159123	NR_046036	ENSMUSG00000097852	4933405D12Rik	-	RIKEN cDNA 4933405D12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141638287-2	chr7	141637787	141638787	+	802.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330001, intron 31 of 33)	intron (NM_001330001, intron 31 of 33)	17032.0	NM_001330001	353328.0	Mm.246621	NM_181729	ENSMUSG00000048191	Muc6	-	mucin 6, gastric	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-103296272-2	chr6	103295772	103296772	+	802.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-214604.0	NM_007697	12661.0	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-98956839-2	chr9	98956339	98957339	+	802.833313	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_012020, exon 1 of 1)	3' UTR (NM_012020, exon 1 of 1)	1232.0	NM_012020	26927.0	Mm.151239	NM_012020	ENSMUSG00000050397	Foxl2	AU045128|BPES|PINTO|Pfrk	forkhead box L2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-5826025-3	chr10	5825536	5826536	+	802.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019958, exon 5 of 5)	3' UTR (NM_019958, exon 5 of 5)	-2093.0	NM_175374	108853.0	Mm.55082	NM_175374	ENSMUSG00000019774	Mtrf1l	9130004K12Rik	mitochondrial translational release factor 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128235765-3	chr8	128235255	128236255	+	802.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42470.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	2.5	0.0	0.0	2.0	4.0	1.0
Merged-chr19-47918183-3	chr19	47917692	47918692	+	802.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001738, intron 1 of 1)	intron (NM_001001738, intron 1 of 1)	1107.0	NM_001001738	414801.0	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	35.5	45.0	34.0	5.0	35.0	28.0
Merged-chr19-46987857-2	chr19	46987357	46988357	+	802.75	f0_c57.idr|f1_c57bl6.idr	intron (NM_001164363, intron 1 of 17)	intron (NM_001164363, intron 1 of 17)	-18290.0	NM_001164365	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	37.0	30.5	31.0	2.0	9.0	3.0
Merged-chr11-116075411-2	chr11	116074911	116075911	+	802.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001009573, intron 7 of 32)	(T)n|Simple_repeat|Simple_repeat	2550.0	NM_001009573	70450.0	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59220923-3	chr10	59220379	59221379	+	802.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024910, intron 1 of 9)	intron (NM_001024910, intron 1 of 9)	968.0	NM_001024911	103080.0	Mm.346842	NM_001024910	ENSMUSG00000019917	Sept10	4921515A04Rik|9430099J10Rik|AA408298|AI874685	septin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39427040-4	chr10	39426645	39427645	+	802.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	57346.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47630349-2	chr17	47629849	47630849	+	802.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198421)	promoter-TSS (NM_198421)	-341.0	NM_198421	224836.0	Mm.59393	NM_198421	ENSMUSG00000090115	Usp49	C330046L10Rik|Gm545	ubiquitin specific peptidase 49	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29370212-4	chr19	29369664	29370664	+	802.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 1 of 6)	intron (NM_021893, intron 1 of 6)	2726.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112665612-4	chr12	112665119	112666119	+	802.729126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331107, intron 2 of 13)	intron (NM_001331107, intron 2 of 13)	-6268.0	NR_105904	102465566.0		NR_105904	ENSMUSG00000098380	Mir6939	Gm27498|mmu-mir-6939	microRNA 6939	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-40703143-3	chr8	40702640	40703640	+	802.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	28063.0	NM_010086	13526.0	Mm.67403	NM_010086	ENSMUSG00000046723	Adam24	Dtgn5	a disintegrin and metallopeptidase domain 24 (testase 1)	protein-coding	2.5	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16231511-6	chr1	16231010	16232010	+	802.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111272, intron 11 of 12)	intron (NM_001111272, intron 11 of 12)	125628.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-45197024-3	chr16	45196524	45197524	+	802.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27313.0	NM_001037719	208154.0	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	4.0	5.0	0.5	7.0	0.5	0.0
Merged-chr2-5507794-4	chr2	5507272	5508272	+	802.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290375, intron 2 of 10)	intron (NM_001290375, intron 2 of 10)	128382.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16110791-4	chr19	16110241	16111241	+	802.674988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22090.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	22.0	6.0	13.5	3.5	2.5	6.5
Merged-chr13-108297641-3	chr13	108297206	108298206	+	802.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18631.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27785410-3	chr15	27784900	27785900	+	802.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 34 of 56)	intron (NM_001081302, intron 34 of 56)	-103858.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-40286073-3	chr8	40285621	40286621	+	802.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030610, intron 1 of 2)	intron (NM_030610, intron 1 of 2)	832.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	0.0	2.0	0.5	1.0	7.5	1.5
Merged-chr2-144258071-1	chr2	144257571	144258571	+	802.666687	f0_balb.idr	intron (NM_024225, intron 4 of 12)	intron (NM_024225, intron 4 of 12)	8131.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113970975-3	chr13	113970475	113971475	+	802.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 4 of 4)	intron (NM_172595, intron 4 of 4)	176467.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102506612-3	chr15	102506114	102507114	+	802.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009582, intron 1 of 13)	B1F|SINE|Alu	4086.0	NM_001358844	26404.0	Mm.172897	NM_009582	ENSMUSG00000023050	Map3k12	DLK|MUK|Zpk	mitogen-activated protein kinase kinase kinase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96969285-3	chr11	96968810	96969810	+	802.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030220, intron 1 of 6)	intron (NM_030220, intron 1 of 6)	8378.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153410360-1	chr2	153409860	153410860	+	802.666687	f0_balb.idr	3' UTR (NM_001134300, exon 11 of 11)	3' UTR (NM_001134300, exon 11 of 11)	34119.0	NM_001001986	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0.0	2.5	1.5	2.0	0.0	0.0
Merged-chr1-105984321-3	chr1	105983821	105984821	+	802.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151625, intron 2 of 2)	intron (NR_151625, intron 2 of 2)	5961.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	6.5	1.5	20.0	6.5	5.0	21.5
Merged-chr1-84437757-4	chr1	84437269	84438269	+	802.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152915, intron 8 of 12)	intron (NM_152915, intron 8 of 12)	-153124.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-33668400-2	chr8	33667900	33668900	+	802.666626	f0_c57.idr|f1_c57bl6.idr	intron (NM_010344, intron 1 of 12)	intron (NM_010344, intron 1 of 12)	15162.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	15.5	20.0	20.0	0.0	3.0	5.0
Merged-chr13-105292901-2	chr13	105292401	105293401	+	802.666626	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027934, exon 1 of 8)	5' UTR (NM_027934, exon 1 of 8)	113.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	51.0	76.5	55.0	49.0	80.5	55.0
Merged-chr7-99544749-4	chr7	99544295	99545295	+	802.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178220, intron 1 of 14)	MIR3|SINE|MIR	-7474.0	NR_029760	723840.0		NR_029760	ENSMUSG00000065571	Mir326	Mirn326|mir-326|mmu-mir-326	microRNA 326	ncRNA	6.0	21.5	7.5	12.5	13.0	8.5
Merged-chr12-17808741-4	chr12	17808217	17809217	+	802.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117908.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	1.5	2.5	1.5	0.0	0.0	0.0
Merged-chr19-32782199-3	chr19	32781701	32782701	+	802.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 2 of 8)	ID_B1|SINE|B4	24624.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83610170-3	chr7	83609642	83610642	+	802.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177695, intron 14 of 22)	RMER15|LTR|ERVL	-21875.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	5.0	1.5	0.0	0.0	5.0	1.0
Merged-chr17-8051376-4	chr17	8050863	8051863	+	802.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033442, intron 2 of 3).2	intron (NM_001033442, intron 2 of 3).2	49865.0	NM_001033442	381059.0	Mm.490353	NM_001033442	ENSMUSG00000095720	Gm1604b	Gm1604	predicted gene 1604b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52576902-5	chr13	52576399	52577399	+	802.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3674.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49101673-4	chr11	49101158	49102158	+	802.587524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12G|LTR|ERVK	12099.0	NM_146337	258334.0	Mm.390388	NM_146337	ENSMUSG00000047511	Olfr1396	MOR276-2	olfactory receptor 1396	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137338417-4	chr5	137337914	137338914	+	802.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1554.0	NM_001359611	83704.0	Mm.235625	NM_031406	ENSMUSG00000037344	Slc12a9	CIP1	solute carrier family 12 (potassium/chloride transporters), member 9	protein-coding	0.0	6.5	7.0	2.5	2.5	12.0
Merged-chr11-86717675-3	chr11	86717175	86718175	+	802.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 14 of 31)	intron (NM_001003908, intron 14 of 31)	33594.0	NM_001098810	217057.0	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65882564-2	chr5	65882064	65883064	+	802.583313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	18995.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180276889-4	chr2	180276356	180277356	+	802.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_173031)	TTS (NM_173031)	-3391.0	NM_145851	252966.0	Mm.386884	NM_145851	ENSMUSG00000038990	Cables2	ik3-2	CDK5 and Abl enzyme substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91249332-5	chr1	91248899	91249899	+	802.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355761)	promoter-TSS (NM_001355761)	-905.0	NM_001355763	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	5.5	11.5	8.0	2.0	10.0	16.5
Merged-chr12-100111146-3	chr12	100110638	100111638	+	802.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-1193.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-63942299-3	chr5	63941797	63942797	+	802.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145923, intron 1 of 6)	intron (NM_145923, intron 1 of 6)	26600.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	11.0	0.0	2.0	0.0	1.5	1.5
Merged-chr8-105226093-3	chr8	105225608	105226608	+	802.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145604, intron 1 of 15)	intron (NM_145604, intron 1 of 15)	920.0	NM_145604	234678.0	Mm.27186	NM_145604	ENSMUSG00000031889	D230025D16Rik	BC006874|Lin10	RIKEN cDNA D230025D16 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32470626-4	chr9	32470120	32471120	+	802.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 2 of 8)	intron (NM_008026, intron 2 of 8)	70832.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-22034751-4	chr3	22034257	22035257	+	802.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41895.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-75410992-3	chr9	75410549	75411549	+	802.509277	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040719, intron 1 of 3)	PB1D10|SINE|Alu	865.0	NR_040719	71274.0	Mm.399152	NR_040719	ENSMUSG00000097021	4933433G15Rik	4921522K19Rik	RIKEN cDNA 4933433G15 gene	ncRNA	13.5	33.5	11.0	2.0	12.5	6.0
Merged-chr1-36568985-2	chr1	36568485	36569485	+	802.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 12 of 14)	ID_B1|SINE|B4	-10604.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85523819-3	chr11	85523313	85524313	+	802.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 16 of 25)	intron (NM_138681, intron 16 of 25)	170649.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120583515-2	chr11	120582978	120583978	+	802.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-1858.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95796396-2	chr15	95795896	95796896	+	802.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	5553.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118234127-2	chr11	118233627	118234627	+	802.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	14465.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-92422433-2	chr6	92421933	92422933	+	802.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001134460, exon 4 of 8)	exon (NM_001134460, exon 4 of 8)	58959.0	NM_001134460	243548.0	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105481602-2	chr8	105481102	105482102	+	802.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175160, intron 5 of 13)	intron (NM_175160, intron 5 of 13)	2825.0	NM_001357252	70796.0	Mm.100917	NM_175160	ENSMUSG00000039199	Zdhhc1	4432412D04Rik|DHHC-1	zinc finger, DHHC domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8747649-2	chr19	8747149	8748149	+	802.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019829, intron 4 of 9)	B2_Mm2|SINE|B2	4678.0	NR_105958	102465599.0		NR_105958	ENSMUSG00000098844	Mir6992	Gm27906|mmu-mir-6992	microRNA 6992	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19739743-2	chr7	19739243	19740243	+	802.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008990, intron 1 of 8)	Lx8|LINE|L1	9830.0	NM_008990	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60895120-2	chr11	60894620	60895620	+	802.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-16082.0	NM_001168507	216821.0	Mm.28063	NM_173453	ENSMUSG00000043284	Tmem11	5730466P16Rik|AA409091	transmembrane protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49777703-2	chr7	49777203	49778203	+	802.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133740)	promoter-TSS (NM_133740)	-655.0	NM_133740	71974.0	Mm.33202	NM_133740	ENSMUSG00000030505	Prmt3	2010005E20Rik|2410018A17Rik|AL033309|Hrmt1l3	protein arginine N-methyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70828721-2	chr17	70828221	70829221	+	802.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18056.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21748448-2	chr14	21747948	21748948	+	802.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001007268, exon 1 of 8)	exon (NM_001007268, exon 1 of 8)	174.0	NM_001007268	27389.0	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120600493-3	chr5	120599991	120600991	+	802.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029408, exon 2 of 5)	exon (NM_029408, exon 2 of 5)	11468.0	NM_029408	75732.0	Mm.425285	NM_029408	ENSMUSG00000029601	Iqcd	4933433C09Rik|AI662646	IQ motif containing D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-44711259-2	chr3	44710759	44711759	+	802.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	667001.0	NR_045172	72511.0	Mm.140700	NR_045172	ENSMUSG00000097040	2610316D01Rik	-	RIKEN cDNA 2610316D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49252241-2	chr11	49251741	49252741	+	802.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110148, intron 3 of 3)	PB1D10|SINE|Alu	1689.0	NM_001110150	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84098024-2	chr17	84097524	84098524	+	802.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19364.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-31195504-3	chr7	31194993	31195993	+	802.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16|LTR|ERVK	33135.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	1.5	13.0	11.5	15.5	3.5	11.5
Merged-chr6-5101801-2	chr6	5101301	5102301	+	802.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 7 of 15)	intron (NM_181595, intron 7 of 15)	92145.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-15760480-2	chr6	15759980	15760980	+	802.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	39819.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58741448-2	chr1	58740948	58741948	+	802.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 7 of 8)	MLT1J2|LTR|ERVL-MaLR	10896.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79363131-2	chr15	79362628	79363628	+	802.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172608, intron 8 of 8)	intron (NM_172608, intron 8 of 8)	12172.0	NR_035464	100316695.0		NR_035464	ENSMUSG00000088901	Mir1943	mir-1943|mmu-mir-1943	microRNA 1943	ncRNA	0.0	4.0	0.0	0.0	4.0	1.5
Merged-chr11-80147407-2	chr11	80146907	80147907	+	802.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5254.0	NM_183275	68550.0	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65598052-2	chr9	65597552	65598552	+	802.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	10892.0	NM_001357527	208084.0	Mm.211032	NM_172453	ENSMUSG00000041064	Pif1	4631410M14|AI449441	PIF1 5'-to-3' DNA helicase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3948388-1	chr7	3947888	3948888	+	802.5	f0_balb.idr	Intergenic	Intergenic	-32887.0	NR_028115	18726.0	Mm.440989	NM_011090	ENSMUSG00000030427	Lilra6	7M1|Pira3	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96965327-2	chr11	96964827	96965827	+	802.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_003293)	TTS (NR_003293)	12361.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-108288385-2	chr13	108287885	108288885	+	802.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-27952.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	0.5	1.0	0.5	0.0	0.0	0.5
Merged-chr19-12019354-2	chr19	12018854	12019854	+	802.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17386.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0.0	0.5	0.0	0.0	0.5	0.0
Merged-chr9-51081691-2	chr9	51081191	51082191	+	802.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177702, intron 5 of 5)	intron (NM_177702, intron 5 of 5)	-4597.0	NM_001033534	244864.0	Mm.335152	NM_001033534	ENSMUSG00000060594	Layn	E030012M19Rik|Gm511	layilin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79929071-2	chr10	79928571	79929571	+	802.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001288625, intron 1 of 8)	intron (NM_001288625, intron 1 of 8)	1730.0	NM_001288625	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27489912-2	chr7	27489412	27490412	+	802.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_018820, exon 2 of 2)	exon (NM_018820, exon 2 of 2)	2959.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95723734-2	chr16	95723234	95724234	+	802.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	21327.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12706811-2	chr17	12706311	12707311	+	802.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010515, intron 22 of 47)	intron (NM_010515, intron 22 of 47)	-30973.0	NM_009202	20517.0	Mm.594	NM_009202	ENSMUSG00000023829	Slc22a1	Lx1|Oct1|Orct|Orct1	solute carrier family 22 (organic cation transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143082377-2	chr7	143081877	143082877	+	802.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_020277, exon 12 of 25)	exon (NM_020277, exon 12 of 25)	12265.0	NM_020277	56843.0	Mm.286668	NM_020277	ENSMUSG00000009246	Trpm5	9430099A16Rik|LTrpC-5|Ltrpc5|Mtr1	transient receptor potential cation channel, subfamily M, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-4772765-2	chr13	4772265	4773265	+	802.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-163601.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119883060-4	chr4	119882563	119883563	+	802.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	68385.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	12.5	1.5	11.5	0.0	3.0	6.0
Merged-chr16-55731073-3	chr16	55730593	55731593	+	802.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91045.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148731839-3	chr2	148731327	148732327	+	802.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019632, intron 1 of 10)	intron (NM_019632, intron 1 of 10)	593.0	NM_019632	17957.0	Mm.274308	NM_019632	ENSMUSG00000027438	Napb	Brp14|E161|I47|SNARE|b-SNAP	N-ethylmaleimide sensitive fusion protein attachment protein beta	protein-coding	9.0	24.5	16.5	6.5	42.0	27.5
Merged-chr11-78209904-2	chr11	78209404	78210404	+	802.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_009297, intron 32 of 36)	MTC|LTR|ERVL-MaLR	16512.0	NM_001045516	216974.0	Mm.50974	NM_001045516	ENSMUSG00000044122	Proca1	4933404M19Rik	protein interacting with cyclin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-48407733-3	chr9	48407253	48408253	+	802.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	45712.0	NM_172921	244853.0	Mm.325522	NM_172921	ENSMUSG00000044229	Nxpe4	C130036J11|D930028F11Rik|Fam55d	neurexophilin and PC-esterase domain family, member 4	protein-coding	13.0	6.0	5.0	3.0	0.0	2.0
Merged-chr13-55728096-3	chr13	55727595	55728595	+	802.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028281, intron 1 of 3)	intron (NM_028281, intron 1 of 3)	727.0	NM_028281	72562.0	Mm.28145	NM_028281	ENSMUSG00000021496	Pcbd2	2700061N24Rik|Dcoh2|Dcohm	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2	protein-coding	10.0	31.5	46.5	17.5	53.0	26.5
Merged-chr2-145890581-3	chr2	145890088	145891088	+	802.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12653.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	5.0	6.0	5.0	6.5	6.0	5.5
Merged-chr1-170907932-4	chr1	170907400	170908400	+	802.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001029984, exon 5 of 6)	exon (NM_001029984, exon 5 of 6)	5041.0	NM_001029984	435653.0	Mm.337931	NM_001029984	ENSMUSG00000070524	Fcrlb	FREB-2|FREB2|FcRL2|Fcrlm2|Fcry|mFCRL2	Fc receptor-like B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21515090-4	chr5	21514583	21515583	+	802.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199632, intron 17 of 20)	B1F|SINE|Alu	-28444.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-51892805-4	chr7	51892300	51893300	+	802.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330607, intron 2 of 7)	intron (NM_001330607, intron 2 of 7)	13833.0	NM_001330607	14453.0	Mm.207360	NM_008087	ENSMUSG00000030498	Gas2	Gas-2	growth arrest specific 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97744070-5	chr11	97743625	97744625	+	802.366638	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106180)	promoter-TSS (NR_106180)	579.0	NM_054051	108083.0	Mm.39700	NM_054051	ENSMUSG00000018547	Pip4k2b	AI848124|PI5P4Kbeta|Pip5k2b|c11	phosphatidylinositol-5-phosphate 4-kinase, type II, beta	protein-coding	11.5	35.5	37.0	4.0	14.0	22.0
Merged-chr10-7833210-3	chr10	7832700	7833700	+	802.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172785, intron 1 of 5)	intron (NM_172785, intron 1 of 5)	730.0	NM_172785	237256.0	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	36.5	68.0	37.0	27.0	92.5	61.5
Merged-chr9-115088395-2	chr9	115087895	115088895	+	802.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_148958, intron 1 of 9)	MER20|DNA|hAT-Charlie	21116.0	NM_148958	74486.0	Mm.458474	NM_148958	ENSMUSG00000040875	Osbpl10	4933433D06Rik|C820004B04Rik|OPR-10|ORP-10	oxysterol binding protein-like 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180127871-3	chr2	180127364	180128364	+	802.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144500, intron 1 of 13)	intron (NM_144500, intron 1 of 13)	8498.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	5.0	1.0	3.5	6.5	20.0	12.5
Merged-chr9-96504245-4	chr9	96503761	96504761	+	802.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	-25586.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-33057445-3	chr12	33056991	33057991	+	802.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024478, intron 8 of 19)	intron (NM_001024478, intron 8 of 19)	35384.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	4.0	0.0	4.5	7.5	0.0	1.5
Merged-chr13-40860084-3	chr13	40859578	40860578	+	802.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_023887, exon 1 of 3)	5' UTR (NM_023887, exon 1 of 3)	310.0	NM_023887	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-8081434-3	chr14	8080942	8081942	+	802.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025938, intron 1 of 5)	RMER10A|LTR|ERVL	1129.0	NM_025938	67053.0	Mm.210048	NM_025938	ENSMUSG00000023156	Rpp14	2610511E03Rik|AA682089	ribonuclease P 14 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45592961-4	chr17	45592440	45593440	+	802.325012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022880)	promoter-TSS (NM_022880)	-547.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4811594-4	chr7	4810993	4811993	+	802.3154910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133777, exon 2 of 4)	exon (NM_133777, exon 2 of 4)	847.0	NM_133777	77891.0	Mm.389787	NM_133777	ENSMUSG00000060860	Ube2s	0910001J09Rik|6720465F12Rik|AA409170|E2-EPF	ubiquitin-conjugating enzyme E2S	protein-coding	19.5	34.5	41.5	4.5	38.0	12.5
Merged-chr18-4280010-4	chr18	4279497	4280497	+	802.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	72956.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-47224813-3	chr13	47224330	47225330	+	802.288879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 3 of 7)	intron (NM_146042, intron 3 of 7)	30827.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	16.0	27.5	14.5	16.5	27.5	19.0
Merged-chr3-105688926-5	chr3	105688501	105689501	+	802.273315	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1430.0	NM_017397	53975.0	Mm.272826	NM_017397	ENSMUSG00000027905	Ddx20	GEMIN3|dp103	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	protein-coding	4.5	32.0	18.0	21.5	19.0	17.0
Merged-chr8-123323493-3	chr8	123322933	123323933	+	802.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4857.0	NM_016925	14087.0	Mm.6536	NM_016925	ENSMUSG00000032815	Fanca	AW208693|FACA	Fanconi anemia, complementation group A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40134908-4	chr4	40134385	40135385	+	802.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8380.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97237152-2	chr15	97236652	97237652	+	802.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-9955.0	NM_172293	239647.0	Mm.130036	NM_172293	ENSMUSG00000044250	Pced1b	Fam113b	PC-esterase domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30415535-2	chr7	30415035	30416035	+	802.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011662, intron 3 of 4)	RMER17C|LTR|ERVK	1747.0	NM_011662	22177.0	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	31.5	130.0	54.5	26.0	48.0	41.5
Merged-chr3-157211664-2	chr3	157211164	157212164	+	802.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039094, intron 6 of 6)	RMER1A|Other|Other	322426.0	NR_152231	381498.0	Mm.402095	NR_152231	ENSMUSG00000105834	4930592C13Rik	Gm1657|Gm43159	RIKEN cDNA 4930592C13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20171240-1	chr13	20170740	20171740	+	802.25	f0_balb.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	80733.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.0	3.0	2.0	1.5	0.5	5.0
Merged-chr7-100780456-3	chr7	100779971	100780971	+	802.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178764, intron 2 of 8)	intron (NM_178764, intron 2 of 8)	73836.0	NM_001362170	319604.0	Mm.260362	NM_178764	ENSMUSG00000029461	Fam168a	2610030B18Rik|B930006L02Rik|mKIAA0280	family with sequence similarity 168, member A	protein-coding	1.5	0.0	0.5	6.0	0.5	2.0
Merged-chr6-51612683-6	chr6	51612159	51613159	+	802.227783	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	67366.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90313543-3	chr3	90313046	90314046	+	802.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-28108.0	NM_139304	229542.0	Mm.270999	NM_139304	ENSMUSG00000042390	Gatad2b	AL118180|C430014D17Rik|P66beta|mKIAA1150	GATA zinc finger domain containing 2B	protein-coding	0.0	5.0	0.0	0.0	4.5	1.0
Merged-chr4-11166715-4	chr4	11166201	11167201	+	802.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021897, intron 3 of 3)	B3|SINE|B2	10260.0	NM_021897	60599.0	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap|p53DINP1	transformation related protein 53 inducible nuclear protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108688539-4	chr6	108688034	108689034	+	802.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27600.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-34570484-3	chr14	34569983	34570983	+	802.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039073, intron 6 of 14)	intron (NM_001039073, intron 6 of 14)	18124.0	NM_001039074	24131.0	Mm.29733	NM_011918	ENSMUSG00000021798	Ldb3	AW742271|PDLIM6|ZASP	LIM domain binding 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-82399160-3	chr8	82398615	82399615	+	802.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_001254747, intron 1 of 7)	intron (NM_001254747, intron 1 of 7)	3471.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	49.5	163.0	105.0	63.0	198.5	127.5
Merged-chr4-32351394-3	chr4	32350835	32351835	+	802.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66100.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.0	0.0	0.0	1.5	1.0	0.0
Merged-chr5-3368444-3	chr5	3367924	3368924	+	802.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	24531.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143022637-2	chr7	143022089	143023089	+	802.166626	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_110354, exon 5 of 5)	non-coding (NR_110354, exon 5 of 5)	16930.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	42.5	93.0	51.0	17.5	106.0	60.0
Merged-chr11-89005203-2	chr11	89004703	89005703	+	802.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009546, intron 2 of 8)	ID_B1|SINE|B4	5800.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	16.5	40.0	11.5	18.0	31.5	9.0
Merged-chr11-102435397-2	chr11	102434904	102435904	+	802.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_008175, exon 10 of 13)	exon (NM_008175, exon 10 of 13)	5082.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.0	2.0	0.0	0.0	0.0	2.0
Merged-chr4-22384086-4	chr4	22383583	22384583	+	802.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172988, intron 3 of 8)	Lx7|LINE|L1	26540.0	NR_104380	269514.0	Mm.40708	NM_172988	ENSMUSG00000040410	Fbxl4	AI836810|FBL4|FBL5	F-box and leucine-rich repeat protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44550578-2	chr7	44550078	44551078	+	802.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_009473, intron 8 of 9)	intron (NM_009473, intron 8 of 9)	-1763.0	NM_011131	18971.0	Mm.16549	NM_011131	ENSMUSG00000038644	Pold1	125kDa	polymerase (DNA directed), delta 1, catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70783408-4	chr9	70782913	70783913	+	802.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	104431.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80248240-2	chr10	80247740	80248740	+	802.125	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	ID_B1|SINE|B4	-1212.0	NM_029272	75406.0	Mm.28712	NM_029272	ENSMUSG00000020153	Ndufs7	1010001M04Rik	NADH dehydrogenase (ubiquinone) Fe-S protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134187558-4	chr5	134187049	134188049	+	802.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359852, intron 1 of 14)	B3|SINE|B2	3511.0	NM_053266	114674.0	Mm.218744	NM_053266	ENSMUSG00000015942	Gtf2ird2	1700012P16Rik	GTF2I repeat domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127550162-2	chr10	127549657	127550657	+	802.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 66 of 88)	intron (NM_008512, intron 66 of 88)	-15598.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	1.5	2.0	2.0	0.0	1.0	2.0
Merged-chr10-112801755-3	chr10	112801256	112802256	+	802.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35996.0	NR_152199	100042639.0	Mm.403280	NR_152199		Gm3942	-	predicted gene 3942	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-124013435-4	chr9	124012921	124013921	+	802.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8550.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171614159-4	chr1	171613670	171614670	+	802.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6760.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	2.5	0.0	3.5	2.5	9.5	10.5
Merged-chr10-24087141-3	chr10	24086654	24087654	+	802.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5140.0	NM_001010837	382348.0	Mm.377897	NM_001010837	ENSMUSG00000100186	Taar8b	Gm1149|taR-8b	trace amine-associated receptor 8B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102241844-4	chr7	102241350	102242350	+	802.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	8268.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	56.5	125.5	84.5	38.5	104.5	72.5
Merged-chr11-76647758-4	chr11	76647247	76648247	+	802.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24723.0	NM_177182	320522.0	Mm.131585	NM_177182	ENSMUSG00000044243	Bhlha9	A830053O21Rik|Fingerin	basic helix-loop-helix family, member a9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122573811-2	chr2	122573291	122574291	+	802.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	37486.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	0.0	1.5	1.0	0.5	8.5	3.0
Merged-chr13-102860903-1	chr13	102860403	102861403	+	802.0	f0_balb.idr	intron (NM_175171, intron 4 of 28)	L2a|LINE|L2	100648.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100503536-5	chr7	100503027	100504027	+	802.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153527, intron 7 of 7)	intron (NM_153527, intron 7 of 7)	10169.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	81.0	91.5	53.0	4.0	47.5	24.0
Merged-chr17-26562812-2	chr17	26562312	26563312	+	802.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	1300.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	1.5	1.0	3.5	0.0	0.5	3.0
Merged-chr17-7464635-1	chr17	7464135	7465135	+	802.0	f1_c57bl6.idr	Intergenic	Intergenic	-79330.0	NM_001142539	667055.0	Mm.327371	NM_001142539	ENSMUSG00000056133	Gm9992	-	predicted gene 9992	protein-coding	0.0	0.0	1.0	0.0	6.5	0.0
Merged-chr8-110627126-2	chr8	110626626	110627626	+	802.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151675, intron 1 of 17)	MTC|LTR|ERVL-MaLR	8559.0	NR_151675	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-129398905-3	chr7	129398413	129399413	+	802.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	141819.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-130647487-2	chr7	130646987	130647987	+	802.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004468, intron 3 of 21)	intron (NM_001004468, intron 3 of 21)	-45069.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149562243-2	chr4	149561743	149562743	+	802.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023465, intron 4 of 4)	intron (NM_023465, intron 4 of 4)	17126.0	NM_001141930	67087.0	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	0.0	1.0	0.0	2.0	5.5	0.0
Merged-chr7-99530073-4	chr7	99529571	99530571	+	802.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-5415.0	NM_178220	109689.0	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	5.5	17.0	15.5	4.5	3.0	5.5
Merged-chr18-67797742-2	chr18	67797253	67798253	+	802.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045376, intron 1 of 3)	RMER4B|LTR|ERVK	2190.0	NR_045376	75286.0	Mm.307315	NR_045376		4930549G23Rik	-	RIKEN cDNA 4930549G23 gene	ncRNA	17.0	24.0	12.5	1.0	4.0	4.5
Merged-chr17-30474789-4	chr17	30474292	30475292	+	802.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172618, intron 6 of 11)	intron (NM_172618, intron 6 of 11)	-78612.0	NR_030688	623169.0	Mm.440508	NR_030688		Gm6402	EG623169	ribosomal protein S17 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70555790-1	chr14	70555290	70556290	+	802.0	f0_balb.idr	intron (NM_021877, intron 2 of 19)	intron (NM_021877, intron 2 of 19)	1734.0	NM_021877	15460.0	Mm.7598	NM_021877	ENSMUSG00000022096	Hr	ALUNC|AU|N|ba|bldy|hr|rh|rh-bmh|rhino	hairless	protein-coding	0.0	0.0	0.0	2.0	0.0	3.5
Merged-chr16-33573434-2	chr16	33572934	33573934	+	802.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 4 of 11)	intron (NM_001083902, intron 4 of 11)	54839.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-124079961-3	chr9	124079461	124080461	+	802.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22222.0	NM_009915	12772.0	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3348145-4	chr5	3347641	3348641	+	802.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	4248.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142961775-2	chr5	142961275	142962275	+	802.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007984, intron 1 of 4)	intron (NM_007984, intron 1 of 4)	1420.0	NM_007984	14086.0	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77742754-1	chr18	77742254	77743254	+	802.0	f0_balb.idr	Intergenic	Intergenic	-9284.0	NR_155289	105246501.0	Mm.403904	NR_155289		A330094K24Rik	-	RIKEN cDNA A330094K24 gene	ncRNA	0.0	3.0	0.0	0.0	0.0	1.0
Merged-chr14-54868283-2	chr14	54867779	54868779	+	802.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1|DNA|hAT-Tip100	-4121.0	NM_001177705	239099.0	Mm.280994	NM_183174	ENSMUSG00000057156	Homez	mKIAA1443	homeodomain leucine zipper-encoding gene	protein-coding	0.5	7.5	2.0	6.0	7.0	5.5
Merged-chr15-24224744-2	chr15	24224244	24225244	+	802.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	1188281.0	NM_001081299	320865.0	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l|Tg(GFAP-APOE_i4)1Hol	cadherin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122640000-1	chr6	122639500	122640500	+	802.0	f1_balb.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	13576.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	19.0	38.5	28.0	5.0	1.5	8.5
Merged-chr19-45151089-2	chr19	45150563	45151563	+	802.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_021901, exon 1 of 3)	exon (NM_021901, exon 1 of 3)	348.0	NM_021901	21908.0	Mm.391203	NM_021901	ENSMUSG00000025215	Tlx1	Hox-11|Hox11|Tlx-1	T cell leukemia, homeobox 1	protein-coding	1.0	6.5	2.5	4.0	0.0	0.0
Merged-chr7-19498498-3	chr7	19498007	19499007	+	802.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9824.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36376414-2	chr18	36375914	36376914	+	802.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081365, intron 2 of 2)	intron (NM_001081365, intron 2 of 2)	27790.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84801124-2	chr2	84800631	84801631	+	802.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019949, intron 1 of 3)	intron (NM_019949, intron 1 of 3)	2303.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52605210-2	chr13	52604710	52605710	+	802.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 1 of 13)	intron (NM_011518, intron 1 of 13)	8328.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75967115-2	chr11	75966615	75967615	+	802.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-32797.0	NM_198637	74230.0	Mm.271247	NM_198637	ENSMUSG00000053783	1700016K19Rik	Liat1	RIKEN cDNA 1700016K19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-4113474-1	chr10	4112974	4113974	+	802.0	f1_c57bl6.idr	intron (NM_001170785, intron 26 of 27)	intron (NM_001170785, intron 26 of 27)	99646.0	NR_152620	102632515.0	Mm.416995	NR_152620	ENSMUSG00000111266	Gm30570	-	predicted gene, 30570	ncRNA	7.5	0.0	5.0	0.0	0.0	4.5
Merged-chr8-36458082-1	chr8	36457582	36458582	+	802.0	f1_c57bl6.idr	Intergenic	CpG	-31109.0	NM_176952	319582.0	Mm.180924	NM_176952	ENSMUSG00000039620	6430573F11Rik	Kiaa1456|TRM9L|Trmt9b	RIKEN cDNA 6430573F11 gene	protein-coding	0.0	0.0	1.0	2.0	0.0	1.0
Merged-chr5-30898323-2	chr5	30897823	30898823	+	802.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048192, intron 12 of 16)	intron (NM_001048192, intron 12 of 16)	8989.0	NM_001294262	231093.0	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59528102-2	chr11	59527602	59528602	+	802.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13467.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-12298736-2	chr12	12298236	12299236	+	802.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	MER94|DNA|hAT-Blackjack	36597.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	5.5	8.5	4.0	2.0	5.5	9.5
Merged-chr6-114256865-2	chr6	114256365	114257365	+	802.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25770.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-36124689-2	chr8	36124122	36125122	+	802.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172911, intron 3 of 5)	intron (NM_172911, intron 3 of 5)	29794.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	3.0	5.0	12.0	7.5	5.0	3.5
Merged-chr1-92253026-1	chr1	92252526	92253526	+	802.0	f1_c57bl6.idr	Intergenic	Intergenic	-72685.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	1.5	2.5	1.0	0.0	0.0	1.0
Merged-chr15-88823109-2	chr15	88822609	88823609	+	802.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029720, exon 6 of 10)	exon (NM_029720, exon 6 of 10)	3463.0	NM_029720	76737.0	Mm.292567	NM_029720	ENSMUSG00000023272	Creld2	5730592L21Rik|C85758	cysteine-rich with EGF-like domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4685272-3	chr16	4684735	4685735	+	802.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001135112, intron 1 of 10)	B3A|SINE|B2	1165.0	NM_001135112	83945.0	Mm.248337	NM_023646	ENSMUSG00000004069	Dnaja3	1200003J13Rik|1810053A11Rik|C81173|Tid-1|Tid1l	DnaJ heat shock protein family (Hsp40) member A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46130404-2	chr4	46129904	46130904	+	802.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355375, intron 3 of 9)	B3|SINE|B2	8071.0	NM_173033	272027.0	Mm.249594	NM_173033	ENSMUSG00000035495	Tstd2	3010020C06	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	protein-coding	0.0	1.0	0.0	0.0	0.0	2.0
Merged-chr2-167746320-2	chr2	167745820	167746820	+	802.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55143.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-39517219-1	chr7	39516719	39517719	+	802.0	f1_balb.idr	promoter-TSS (NM_001004139)	promoter-TSS (NM_001004139)	-547.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	67.5	115.0	99.5	66.0	74.5	63.5
Merged-chr7-19589479-4	chr7	19588969	19589969	+	802.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_125836, intron 6 of 17)	B3|SINE|B2	12182.0	NM_022409	63872.0	Mm.23310	NM_022409	ENSMUSG00000011267	Zfp296	2210018A16Rik|Znf296	zinc finger protein 296	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-38255134-2	chr3	38254634	38255634	+	802.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-47015.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128889573-2	chr6	128889073	128890073	+	802.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289706, intron 2 of 6)	RLTR53B_Mm|LTR|ERVK	1551.0	NM_001254946	232406.0	Mm.30745	NM_001254946	ENSMUSG00000090164	BC035044	-	cDNA sequence BC035044	protein-coding	33.5	147.5	133.0	77.5	181.0	125.0
Merged-chr5-114130071-2	chr5	114129571	114130571	+	802.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040691)	promoter-TSS (NM_001040691)	-364.0	NM_001040691	22256.0	Mm.1393	NM_011677	ENSMUSG00000029591	Ung	UNG1|UNG2	uracil DNA glycosylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17522733-2	chr12	17522218	17523218	+	802.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22155.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	8.0	20.5	8.5	0.0	1.0	0.0
Merged-chr1-156303212-1	chr1	156302712	156303712	+	802.0	f1_balb.idr	intron (NM_001277730, intron 1 of 17)	CpG	136.0	NM_001134741	214575.0	Mm.252800	NM_001134741	ENSMUSG00000060985	Tdrd5	Gm103	tudor domain containing 5	protein-coding	9.5	0.0	0.0	0.0	2.0	1.0
Merged-chr7-136321097-2	chr7	136320597	136321597	+	802.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28318.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122315687-4	chr8	122315193	122316193	+	801.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009569, intron 3 of 9)	intron (NM_009569, intron 3 of 9)	33552.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-41587149-2	chr3	41586653	41587653	+	801.974976	f0_balb.idr|f0_c57.idr	intron (NM_001130184, intron 2 of 10)	intron (NM_001130184, intron 2 of 10)	22273.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	17.0	27.5	25.0	15.0	44.0	28.5
Merged-chr2-50907291-3	chr2	50906783	50907783	+	801.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2401.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147891949-4	chr5	147891427	147892427	+	801.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357002, intron 2 of 5)	(GGGTG)n|Simple_repeat|Simple_repeat	2888.0	NM_001357002	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	1.0	3.0	1.5	1.0	3.0	4.0
Merged-chr11-90242029-4	chr11	90241559	90242559	+	801.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-7417.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44772739-4	chr16	44772225	44773225	+	801.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	6989.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-80020589-3	chr8	80020083	80021083	+	801.93335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020259, intron 4 of 12)	intron (NM_020259, intron 4 of 12)	37425.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51427969-4	chr3	51427463	51428463	+	801.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053089, intron 1 of 19)	intron (NM_053089, intron 1 of 19)	11947.0	NM_053089	74838.0	Mm.275281	NM_053089	ENSMUSG00000063273	Naa15	5730450D16Rik|6330400I15|ASTBDN|Narg1|Tbdn-1|mNAT1	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46476016-3	chr18	46475615	46476615	+	801.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-10299.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65991334-3	chr3	65990906	65991906	+	801.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-33157.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	16.0	7.5	16.0	6.5	14.5	11.0
Merged-chr1-37002266-4	chr1	37001775	37002775	+	801.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-62748.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76783823-4	chr15	76783379	76784379	+	801.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	34291.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	2.0	2.5	0.0	8.5	7.5	3.5
Merged-chr4-149706201-4	chr4	149705752	149706752	+	801.854187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-4623.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	55.5	136.0	77.5	46.5	23.5	21.5
Merged-chr8-119836892-5	chr8	119836395	119837395	+	801.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	3684.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57058399-2	chr17	57057899	57058899	+	801.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025877, intron 1 of 9)	intron (NM_025877, intron 1 of 9)	1464.0	NM_025877	66972.0	Mm.23720	NM_025877	ENSMUSG00000046329	Slc25a23	2310067G05Rik|SCaMC-3	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55301047-2	chr12	55300580	55301580	+	801.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_021529, intron 2 of 13)	RMER10A|LTR|ERVL	-1557.0	NM_025373	66132.0	Mm.383213	NM_025373	ENSMUSG00000021023	1110008L16Rik	Kiaa0391|Mrpp3|mKIAA0391	RIKEN cDNA 1110008L16 gene	protein-coding	0.0	0.0	0.0	2.0	0.0	0.0
Merged-chr17-56991059-2	chr17	56990559	56991559	+	801.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_017393, intron 2 of 5)	intron (NM_017393, intron 2 of 5)	795.0	NM_017393	53895.0	Mm.287892	NM_017393	ENSMUSG00000002660	Clpp	AU019820|D17Wsu160e	caseinolytic mitochondrial matrix peptidase proteolytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-60745840-3	chr1	60745369	60746369	+	801.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007642)	promoter-TSS (NM_007642)	-519.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122948863-4	chr8	122948334	122949334	+	801.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	93450.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	4.5	7.5	1.5	0.0	8.5	0.5
Merged-chr7-121071269-2	chr7	121070769	121071769	+	801.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_030691, intron 1 of 5)	intron (NM_030691, intron 1 of 5)	3261.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95166087-4	chr8	95165589	95166589	+	801.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23549.0	NM_001145831	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	2.0	3.0	4.0	4.0	14.5	6.0
Merged-chr12-108636712-4	chr12	108636183	108637183	+	801.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 2 of 14)	MIRb|SINE|MIR	930.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116108892-3	chr9	116108364	116109364	+	801.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 4 of 6)	L1MA5|LINE|L1	66499.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-41299597-3	chr8	41299094	41300094	+	801.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023662, intron 22 of 37)	intron (NM_023662, intron 22 of 37)	59835.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	1.5	0.0	0.0	0.0	1.0	0.0
Merged-chr4-74311306-3	chr4	74310800	74311800	+	801.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356561, intron 5 of 20)	intron (NM_001356561, intron 5 of 20)	59421.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-53288065-5	chr6	53287552	53288552	+	801.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 1 of 10)	CpG	749.0	NM_001327821	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27038883-2	chr2	27038383	27039383	+	801.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-10885.0	NM_001177627	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127585829-2	chr10	127585329	127586329	+	801.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 15 of 88)	L2|LINE|L2	35319.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	1.0	0.0	1.0	1.0	0.0	1.0
Merged-chr11-54437078-2	chr11	54436578	54437578	+	801.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1101.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98693420-2	chr11	98692920	98693920	+	801.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_009439, exon 7 of 12)	exon (NM_009439, exon 7 of 12)	-7893.0	NM_009971	12985.0	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96915575-2	chr11	96915075	96916075	+	801.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_030248, intron 2 of 13)	B1_Mur2|SINE|Alu	939.0	NM_001308183	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-149336064-4	chr5	149335561	149336561	+	801.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71057.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120056551-2	chr1	120056051	120057051	+	801.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001012322, intron 12 of 13)	intron (NM_001012322, intron 12 of 13)	17229.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	5.5	3.0	4.5	0.0	0.0	5.0
Merged-chr3-104644139-4	chr3	104643638	104644638	+	801.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009196, intron 1 of 4)	RSINE1|SINE|B4	5474.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142435726-4	chr7	142435219	142436219	+	801.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285858, intron 1 of 8)	intron (NM_001285858, intron 1 of 8)	742.0	NM_018802	55925.0	Mm.213002	NM_018802	ENSMUSG00000031098	Syt8	-	synaptotagmin VIII	protein-coding	1.5	0.0	3.0	0.0	1.0	0.0
Merged-chr13-30745292-5	chr13	30744770	30745770	+	801.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3963.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3924612-4	chr19	3924115	3925115	+	801.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026316, intron 1 of 9)	intron (NM_026316, intron 1 of 9)	5101.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73445672-4	chr13	73445149	73446149	+	801.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A2|LTR|ERVK	-21734.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54862133-4	chr12	54861654	54862654	+	801.69165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007688, intron 1 of 3)	intron (NM_007688, intron 1 of 3)	723.0	NM_007688	12632.0	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	15.5	33.0	31.5	12.0	32.0	40.5
Merged-chr2-84872530-2	chr2	84872030	84873030	+	801.666687	f1_balb.idr|f1_c57bl6.idr	exon (NM_199223, exon 3 of 3)	exon (NM_199223, exon 3 of 3)	14162.0	NM_199223	269295.0	Mm.86447	NM_199223	ENSMUSG00000050896	Rtn4rl2	Ngr2|Ngrh1|Ngrl3	reticulon 4 receptor-like 2	protein-coding	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr3-101293948-1	chr3	101293448	101294448	+	801.666687	f0_balb.idr	Intergenic	Intergenic	-6009.0	NM_013486	12481.0	Mm.22842	NM_013486	ENSMUSG00000027863	Cd2	LFA-2|Ly-37|Ly37	CD2 antigen	protein-coding	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr5-66174727-3	chr5	66174242	66175242	+	801.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040695, intron 2 of 2)	intron (NR_040695, intron 2 of 2)	16593.0	NR_040695	73639.0	Mm.48851	NR_040695	ENSMUSG00000107014	1700126H18Rik	-	RIKEN cDNA 1700126H18 gene	ncRNA	0.0	2.0	0.0	0.0	3.0	0.5
Merged-chr1-151011175-3	chr1	151010680	151011680	+	801.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17745.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17973645-3	chr17	17973115	17974115	+	801.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3157.0	NM_008042	14294.0	Mm.378918	NM_008042	ENSMUSG00000079700	Fpr3	ALX|Fpr-rs1|Fpr-s1|Fprl1|LXA4-R|Lxa4r	formyl peptide receptor 3	protein-coding	2.0	0.0	1.0	9.5	1.0	1.5
Merged-chr8-120078284-3	chr8	120077804	120078804	+	801.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23168.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102925149-3	chr2	102924642	102925642	+	801.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23477.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	8.5	14.0	20.0	29.5	55.5	24.0
Merged-chr8-70759207-4	chr8	70758741	70759741	+	801.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009001)	TTS (NM_009001)	1680.0	NM_183170	234384.0	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	0.0	5.0	5.5	2.5	18.0	9.0
Merged-chr5-125341872-4	chr5	125341304	125342304	+	801.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205082)	promoter-TSS (NM_001205082)	-710.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.0	16.0	5.5	6.5	4.0	0.5
Merged-chr6-116002609-2	chr6	116002109	116003109	+	801.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7604.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153482148-2	chr1	153481648	153482648	+	801.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007842, intron 3 of 27)	B2_Mm1t|SINE|B2	5512.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120369825-4	chr11	120369349	120370349	+	801.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027980, exon 10 of 10)	3' UTR (NM_027980, exon 10 of 10)	8315.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54658936-4	chr12	54658456	54659456	+	801.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-2384.0	NM_134054	104725.0	Mm.485026	NM_134054	ENSMUSG00000044408	Sptssa	1110002B05Rik|AA407909|AA409588|AU041967|Ssspta	serine palmitoyltransferase, small subunit A	protein-coding	0.0	0.0	1.0	4.5	0.0	0.0
Merged-chr18-37933694-4	chr18	37933227	37934227	+	801.612488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305981, intron 1 of 28)	intron (NM_001305981, intron 1 of 28)	1749.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87504044-6	chr6	87503499	87504499	+	801.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	(TC)n|Simple_repeat|Simple_repeat	-7672.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	39.5	71.0	65.0	26.5	77.5	72.0
Merged-chr10-57714445-4	chr10	57713970	57714970	+	801.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008863, intron 4 of 5)	intron (NM_008863, intron 4 of 5)	63489.0	NM_001190402	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	9.5	2.5	3.0	9.5	1.5	3.0
Merged-chr2-142859728-4	chr2	142859215	142860215	+	801.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 3 of 26)	intron (NM_001355123, intron 3 of 26)	41749.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66305399-4	chr9	66304902	66305902	+	801.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45048.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-32519565-3	chr6	32519052	32520052	+	801.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 1 of 31)	intron (NM_175750, intron 1 of 31)	8411.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50834164-3	chr9	50833645	50834645	+	801.518494	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045601, intron 13 of 13)	intron (NR_045601, intron 13 of 13)	-22779.0	NM_001034085	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	10.5	2.0	11.5	12.0	2.5	9.0
Merged-chr2-43795019-4	chr2	43794526	43795526	+	801.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 2 of 14)	intron (NM_001301831, intron 2 of 14)	46202.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-55231762-2	chr15	55231262	55232262	+	801.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037937, intron 8 of 8)	intron (NM_001037937, intron 8 of 8)	-75988.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-14350598-2	chr14	14350098	14351098	+	801.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008369, intron 6 of 11)	intron (NM_008369, intron 6 of 11)	4103.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	0.0	4.5	1.5	0.0	0.0	0.0
Merged-chr3-100702960-2	chr3	100702460	100703460	+	801.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17487.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-123266746-1	chr3	123266246	123267246	+	801.5	f1_balb.idr	promoter-TSS (NM_027135)	promoter-TSS (NM_027135)	-750.0	NM_027135	69608.0	Mm.29293	NM_027135	ENSMUSG00000039234	Sec24d	2310020L09Rik|Gm1349	Sec24 related gene family, member D (S. cerevisiae)	protein-coding	95.5	190.5	129.5	90.0	181.0	148.5
Merged-chr6-125230218-2	chr6	125229718	125230718	+	801.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_145391, exon 3 of 7)	exon (NM_145391, exon 3 of 7)	-1058.0	NR_015604	78668.0	Mm.10626	NR_015604	ENSMUSG00000030337	E130112N10Rik	5830448L21Rik|9530059J11Rik	RIKEN cDNA E130112N10 gene	ncRNA	0.0	3.0	0.0	0.0	5.5	0.0
Merged-chr16-92897090-2	chr16	92896590	92897590	+	801.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-71016.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58986013-1	chr15	58985513	58986513	+	801.5	f0_balb.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	52203.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139332761-2	chr5	139332261	139333261	+	801.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7297.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96616053-2	chr10	96615553	96616553	+	801.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007569)	promoter-TSS (NM_007569)	-948.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41634583-6	chr13	41634026	41635026	+	801.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163572, exon 3 of 3)	exon (NM_001163572, exon 3 of 3)	28310.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3339344-2	chr12	3338844	3339844	+	801.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25788.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100543061-4	chr15	100542548	100543548	+	801.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355497, intron 2 of 15)	IAPEY3-int|LTR|ERVK	8960.0	NM_033476	21422.0	Mm.219040	NM_033476	ENSMUSG00000009733	Tfcp2	CP-2|CP2|D230015P20Rik|LBP-1c|LBP-1d|LBP1|LSF|Tcfcp2|UBP-1	transcription factor CP2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84064613-4	chr2	84064127	84065127	+	801.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-123401.0	NM_027964	71861.0	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	0.0	1.0	0.0	0.0	1.0	0.0
Merged-chr6-72038913-5	chr6	72038400	72039400	+	801.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046180, intron 1 of 2)	RLTR13C2|LTR|ERVK	3628.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121398883-2	chr10	121398337	121399337	+	801.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33747.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75118967-2	chr15	75118467	75119467	+	801.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6996.0	NM_001099217	100041546.0	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	0.0	1.5	1.0	0.0	3.5	0.0
Merged-chr4-47262809-4	chr4	47262343	47263343	+	801.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 10 of 39)	intron (NM_009928, intron 10 of 39)	54831.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-131350782-2	chr3	131350282	131351282	+	801.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-5859.0	NM_028943	74442.0	Mm.273360	NM_028943	ENSMUSG00000050931	Sgms2	4933405A16Rik|5133401H06Rik|AI854299	sphingomyelin synthase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69752508-2	chr11	69752008	69753008	+	801.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291068, intron 1 of 28)	B1_Mur2|SINE|Alu	6125.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.0	1.5	2.0	7.0	5.0	4.5
Merged-chr2-84740824-2	chr2	84740324	84741324	+	801.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029544)	TTS (NR_029544)	354.0	NR_029544	387149.0		NR_029544	ENSMUSG00000065484	Mir130a	Mirn130|Mirn130a|mir-130a	microRNA 130a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-66911792-4	chr10	66911279	66912279	+	801.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_138560)	TTS (NR_138560)	8605.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-39881761-1	chr16	39881261	39882261	+	801.5	f0_balb.idr	Intergenic	Intergenic	-102603.0	NM_001361282	268890.0	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Gm29907|Lam|Lamp	limbic system-associated membrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135509311-2	chr1	135508811	135509811	+	801.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173437, intron 3 of 28)	intron (NM_173437, intron 3 of 28)	-54628.0	NR_049188	100885827.0		NR_049188	ENSMUSG00000093515	Mir1231	Gm23720|mir-1231|mmu-mir-1231	microRNA 1231	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-66461175-4	chr18	66460649	66461649	+	801.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021451, intron 2 of 2)	intron (NM_021451, intron 2 of 2)	2545.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123085050-2	chr5	123084550	123085550	+	801.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039723, intron 1 of 11)	intron (NM_001039723, intron 1 of 11)	8775.0	NM_001039723	330189.0	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-145939996-2	chr3	145939496	145940496	+	801.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151445, intron 3 of 3)	intron (NR_151445, intron 3 of 3)	1982.0	NR_151446	66421.0	Mm.25137	NM_025555	ENSMUSG00000036873	2410004B18Rik	4930572C24Rik	RIKEN cDNA 2410004B18 gene	protein-coding	4.0	3.0	1.0	0.0	0.0	0.0
Merged-chr9-21298551-2	chr9	21298051	21299051	+	801.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110300, intron 8 of 10)	(CA)n|Simple_repeat|Simple_repeat	-7342.0	NM_009878	12581.0	Mm.29020	NM_009878	ENSMUSG00000096472	Cdkn2d	INK4d|p19|p19INK4d	cyclin dependent kinase inhibitor 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88285065-4	chr1	88284538	88285538	+	801.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7459.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50244709-2	chr6	50244209	50245209	+	801.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018769, intron 3 of 9)	intron (NM_018769, intron 3 of 9)	17060.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30619724-2	chr14	30619168	30620168	+	801.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	B1_Mur4|SINE|Alu	6540.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	22.0	25.0	32.5	27.5	13.5	31.0
Merged-chr7-73559796-2	chr7	73559296	73560296	+	801.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1401.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27897945-2	chr17	27897445	27898445	+	801.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001080769, exon 21 of 21)	3' UTR (NM_001080769, exon 21 of 21)	11297.0	NM_026836	68776.0	Mm.267998	NM_026836	ENSMUSG00000024218	Taf11	1110038O14Rik|AI115401|AL024207|AW552398|PRO214|TAF2I|TAFII28	TATA-box binding protein associated factor 11	protein-coding	28.5	85.0	48.0	15.5	16.5	14.0
Merged-chr9-77753985-2	chr9	77753485	77754485	+	801.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010295)	promoter-TSS (NM_010295)	-550.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	0.0	1.5	3.5	0.0	1.0	3.5
Merged-chr17-55946540-2	chr17	55946040	55947040	+	801.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310337, intron 1 of 3)	intron (NM_001310337, intron 1 of 3)	-1281.0	NM_146249	240120.0	Mm.441018	NM_146249	ENSMUSG00000062101	Zfp119b	-	zinc finger protein 119b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118504035-2	chr11	118503535	118504535	+	801.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024931, intron 6 of 14)	intron (NM_001024931, intron 6 of 14)	27203.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22984180-2	chr11	22983680	22984680	+	801.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-1896.0	NM_144514	17846.0	Mm.259903	NM_144514	ENSMUSG00000051355	Commd1	AI256843|Murr1|U2/Mu	COMM domain containing 1	protein-coding	0.0	2.5	0.0	0.0	0.0	0.0
Merged-chr4-129618492-2	chr4	129617917	129618917	+	801.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025455)	TTS (NM_025455)	676.0	NM_198026	230767.0	Mm.441132	NM_198026	ENSMUSG00000040795	Iqcc	BC026978	IQ motif containing C	protein-coding	11.0	68.5	20.5	21.0	31.0	37.0
Merged-chr15-89182532-5	chr15	89182034	89183034	+	801.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027081, exon 20 of 20)	3' UTR (NM_027081, exon 20 of 20)	-1746.0	NM_138749	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80141652-2	chr12	80141178	80142178	+	801.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8834.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr7-141639612-2	chr7	141639112	141640112	+	801.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330001, intron 31 of 33)	intron (NM_001330001, intron 31 of 33)	15707.0	NM_001330001	353328.0	Mm.246621	NM_181729	ENSMUSG00000048191	Muc6	-	mucin 6, gastric	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-70812079-4	chr6	70811582	70812582	+	801.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19907.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-104996515-3	chr2	104996022	104997022	+	801.477783	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177600, intron 17 of 17)	intron (NM_177600, intron 17 of 17)	20505.0	NM_145380	98221.0	Mm.379278	NM_145380	ENSMUSG00000027170	Eif3m	Ga17|Pcid1|Tango7	eukaryotic translation initiation factor 3, subunit M	protein-coding	13.0	19.0	16.0	23.0	4.0	6.0
Merged-chr19-43879842-3	chr19	43879330	43880330	+	801.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001306088)	promoter-TSS (NM_001306088)	-62.0	NM_001306088	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84653556-3	chr2	84653058	84654058	+	801.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355064, intron 1 of 18)	B2_Mm2|SINE|B2	-2818.0	NM_001355066	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0.0	11.0	6.0	0.0	5.5	4.0
Merged-chr18-9619855-4	chr18	9619352	9620352	+	801.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007593)	promoter-TSS (NM_007593)	-383.0	NM_007593	26369.0	Mm.195831	NM_007593	ENSMUSG00000050996	Cetn1	caltractin	centrin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-149307965-3	chr6	149307454	149308454	+	801.416687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_LTR|LTR|ERV1	-1460.0	NM_001289661	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91091586-4	chr2	91091044	91092044	+	801.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-5134.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	0.5	18.5	19.0	2.0	16.0	15.0
Merged-chr11-119920061-3	chr11	119919563	119920563	+	801.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001085498)	TTS (NM_001085498)	6253.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88380241-3	chr3	88379744	88380744	+	801.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1543.0	NM_001032298	12097.0	Mm.425160	NM_001032298	ENSMUSG00000074486	Bglap2	BGP2|Bglap1|Bgp|Og2|mOC-B	bone gamma-carboxyglutamate protein 2	protein-coding	1.5	7.5	2.0	2.5	7.5	2.0
Merged-chr4-108302359-4	chr4	108301883	108302883	+	801.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1293.0	NM_001033634	414872.0	Mm.426241	NM_001033634	ENSMUSG00000034636	Zyg11b	1110046I03Rik|2810482G21Rik|D4Mgi23|Gm431|mKIAA1730	zyg-ll family member B, cell cycle regulator	protein-coding	5.5	2.0	1.5	11.0	11.5	10.5
Merged-chr11-121981950-2	chr11	121981450	121982450	+	801.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	151732.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141488418-3	chr7	141487900	141488900	+	801.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252588, intron 2 of 7)	intron (NM_001252588, intron 2 of 7)	12020.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10100912-3	chr19	10100402	10101402	+	801.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019699, intron 1 of 11)	intron (NM_019699, intron 1 of 11)	601.0	NM_019699	56473.0	Mm.38901	NM_019699	ENSMUSG00000024665	Fads2	2900042M13Rik|Fadsd2	fatty acid desaturase 2	protein-coding	0.0	2.0	0.0	3.0	2.0	4.5
Merged-chr4-137764277-3	chr4	137763766	137764766	+	801.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007431, intron 1 of 11)	intron (NM_007431, intron 1 of 11)	2209.0	NM_001287172	11647.0	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	1.5	18.0	9.5	2.0	8.5	5.0
Merged-chr18-38351010-2	chr18	38350510	38351510	+	801.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-12017.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81406836-6	chr10	81406264	81407264	+	801.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 6 of 8)	intron (NM_026756, intron 6 of 8)	-2811.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137676273-3	chr4	137675795	137676795	+	801.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138591, intron 1 of 23)	intron (NR_138591, intron 1 of 23)	-5332.0	NM_001081155	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	0.0	5.0	0.0	2.5	1.0	0.0
Merged-chr2-33154937-2	chr2	33154437	33155437	+	801.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290572, intron 12 of 17)	intron (NM_001290572, intron 12 of 17)	-23501.0	NM_001355201	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184260932-3	chr1	184260451	184261451	+	801.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	226570.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-54115002-3	chr19	54114481	54115481	+	801.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69799.0	NM_007417	11551.0	Mm.235195	NM_007417	ENSMUSG00000033717	Adra2a	AW122659|Adra-2|Adra-2a|alpha(2A)AR|alpha2-C10|alpha2A|alpha2A-AR	adrenergic receptor, alpha 2a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34356108-4	chr17	34355597	34356597	+	801.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_079835, intron 1 of 8)	MTD|LTR|ERVL-MaLR	1275.0	NM_079835	547431.0	Mm.441007	NM_079835	ENSMUSG00000024340	Btnl2	BTL-II|BTLN2|Btl2|Gm315|NG9	butyrophilin-like 2	protein-coding	57.5	100.0	85.5	58.0	84.0	50.0
Merged-chr17-87561128-4	chr17	87560630	87561630	+	801.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74849.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	1.0	1.5	4.5	3.0	5.0	6.5
Merged-chr3-31089212-4	chr3	31088682	31089682	+	801.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5876.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-92286639-3	chr6	92286157	92287157	+	801.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42007.0	NM_009426	22044.0	Mm.1363	NM_009426	ENSMUSG00000005892	Trh	Pro-TRH|Trf	thyrotropin releasing hormone	protein-coding	3.0	19.5	7.0	9.0	3.0	3.0
Merged-chr13-37960084-3	chr13	37959588	37960588	+	801.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34120.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	0.0	8.5	1.0	1.0	1.5	1.5
Merged-chr13-99093513-4	chr13	99093008	99094008	+	801.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5587.0	NR_045495	69603.0	Mm.390632	NR_045495	ENSMUSG00000100410	2310020H05Rik	-	RIKEN cDNA 2310020H05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-92532280-2	chr13	92531780	92532780	+	801.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1470.0	NM_173392	218441.0	Mm.259585	NM_173392	ENSMUSG00000021706	Zfyve16	AI035632|B130024H06Rik|B130031L15|mKIAA0305	zinc finger, FYVE domain containing 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-29987580-2	chr13	29987080	29988080	+	801.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1517.0	NM_010093	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-89335452-4	chr7	89335050	89336050	+	801.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 2 of 14)	intron (NM_001360746, intron 2 of 14)	3237.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24486253-4	chr5	24485745	24486745	+	801.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359881, intron 9 of 15)	intron (NM_001359881, intron 9 of 15)	34068.0	NM_139153	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87461168-2	chr6	87460668	87461668	+	801.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 10 of 10)	intron (NM_001037727, intron 10 of 10)	32174.0	NM_009756	12154.0	Mm.483321	NM_009756	ENSMUSG00000030046	Bmp10	b2b2711Clo	bone morphogenetic protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-108456141-4	chr4	108455636	108456636	+	801.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3290.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100125310-2	chr12	100124810	100125810	+	801.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_183155)	TTS (NM_183155)	12979.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166565534-2	chr2	166565034	166566034	+	801.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177782)	TTS (NM_177782)	1012.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173546503-4	chr2	173546025	173547025	+	801.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23933.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	0.0	0.5	1.0	0.5	0.5	1.5
Merged-chr17-13052314-3	chr17	13051797	13052797	+	801.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013832)	promoter-TSS (NM_001013832)	-17.0	NM_001013832	436440.0	Mm.335670	NM_001013832	ENSMUSG00000071311	Gpr31b	12-HETER|GPR31c(t)|Gpr31|Gpr31c	G protein-coupled receptor 31, D17Leh66b region	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76724863-6	chr15	76724424	76725424	+	801.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001168288, exon 12 of 12)	3' UTR (NM_001168288, exon 12 of 12)	-1079.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54770026-3	chr11	54769541	54770541	+	801.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178626, intron 1 of 5)	Lx8|LINE|L1	17662.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27539772-3	chr2	27539218	27540218	+	801.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F3|LINE|L1	24571.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34538825-2	chr5	34538325	34539325	+	801.174988	f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	-4540.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-57468781-3	chr8	57468265	57469265	+	801.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009136, intron 1 of 2)	B4A|SINE|B4	12842.0	NM_009136	20284.0	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34073938-4	chr11	34073415	34074415	+	801.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 8 of 20)	intron (NM_010696, intron 8 of 20)	24639.0	NR_155520	76874.0	Mm.437529	NR_155520		4930469K13Rik	-	RIKEN cDNA 4930469K13 gene	ncRNA	3.5	20.0	14.0	15.0	20.5	15.0
Merged-chr1-125427169-3	chr1	125426695	125427695	+	801.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205386, intron 2 of 12)	MTB_Mm|LTR|ERVL-MaLR	8532.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25858147-3	chr14	25857658	25858658	+	801.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013469, intron 1 of 14)	intron (NM_013469, intron 1 of 14)	16003.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.5	0.0	3.5	5.5	8.5	12.5
Merged-chr2-3660138-3	chr2	3659634	3660634	+	801.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53324.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80374336-2	chr10	80373836	80374836	+	801.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4699.0	NR_038088	100568459.0		NR_038088	ENSMUSG00000115783	Bc1	Gm24367	brain cytoplasmic RNA 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-105393689-3	chr9	105393285	105394285	+	801.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172461, intron 1 of 15)	intron (NM_172461, intron 1 of 15)	1502.0	NM_172461	208583.0	Mm.347509	NM_172461	ENSMUSG00000035032	Nek11	4932416N14Rik	NIMA (never in mitosis gene a)-related expressed kinase 11	protein-coding	4.0	0.0	5.0	2.0	19.5	4.0
Merged-chr11-45539636-3	chr11	45539121	45540121	+	801.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-268462.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	2.0	4.5	0.0	6.0	0.0	0.5
Merged-chr1-144283505-3	chr1	144282998	144283998	+	801.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34394.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108625097-4	chr6	108624595	108625595	+	801.104187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104577, intron 1 of 6)	intron (NR_104577, intron 1 of 6)	-1928.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117283506-2	chr10	117283006	117284006	+	801.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1234.0	NM_017372	17105.0	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118922153-4	chr9	118921669	118922669	+	801.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4367.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	1.0	1.5	1.0	0.0	5.0	0.0
Merged-chr16-31024503-4	chr16	31023988	31024988	+	801.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 2 of 3)	intron (NM_198626, intron 2 of 3)	56944.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	20.0	2.0	2.5	1.5	6.5	4.0
Merged-chr11-97999907-3	chr11	97999415	98000415	+	801.083313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3742.0	NR_152188	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64256746-3	chr15	64256247	64257247	+	801.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	55926.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80816151-2	chr12	80815651	80816651	+	801.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	25619.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101135392-2	chr15	101134934	101135934	+	801.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001277259, exon 5 of 12)	exon (NM_001277259, exon 5 of 12)	6912.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	29.5	44.0	29.0	20.5	35.5	23.0
Merged-chr4-133661096-2	chr4	133660596	133661596	+	801.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001145956)	TTS (NM_001145956)	11551.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	0.0	6.5	3.0	20.0	25.5	18.5
Merged-chr5-113591440-2	chr5	113590940	113591940	+	801.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41020.0	NM_177292	320916.0	Mm.102783	NM_177292	ENSMUSG00000063430	Wscd2	4933413A10Rik|C530024P05Rik|Gm450	WSC domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134403107-2	chr6	134402607	134403607	+	801.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153848, exon 1 of 9)	non-coding (NR_153848, exon 1 of 9)	308.0	NR_153848	74064.0		NR_153848		4933406J09Rik	Gm44293	RIKEN cDNA 4933406J09 gene	ncRNA	1.0	0.0	5.5	1.5	3.5	4.0
Merged-chr17-71162861-2	chr17	71162361	71163361	+	801.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20671.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.0	0.5	5.0	1.5	1.5	2.0
Merged-chr16-94615297-2	chr16	94614797	94615797	+	801.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	MTD|LTR|ERVL-MaLR	3878.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70688335-2	chr8	70687805	70688805	+	801.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9434.0	NM_010592	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	0.0	4.0	2.0	3.5	12.5	1.0
Merged-chr8-107589035-4	chr8	107588537	107589537	+	801.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010817)	promoter-TSS (NM_010817)	-555.0	NM_010817	17463.0	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-149690532-1	chr5	149690032	149691032	+	801.0	f0_balb.idr	intron (NM_001081204, intron 1 of 14)	intron (NM_001081204, intron 1 of 14)	12275.0	NM_001081204	381694.0	Mm.45060	NM_001081204	ENSMUSG00000051950	B3glct	B3galtl|Gm1057	beta-3-glucosyltransferase	protein-coding	3.0	17.0	17.0	8.5	30.0	31.0
Merged-chr12-55155618-1	chr12	55155118	55156118	+	801.0	f1_balb.idr	intron (NM_001100109, intron 1 of 15)	CpG	514.0	NM_001100109	665155.0	Mm.12848	NM_001100109	ENSMUSG00000112449	Srp54b	-	signal recognition particle 54B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10425532-1	chr17	10425032	10426032	+	801.0	f0_balb.idr	intron (NM_027032, intron 4 of 4)	intron (NM_027032, intron 4 of 4)	-30684.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-21718406-1	chr18	21717906	21718906	+	801.0	f0_balb.idr	Intergenic	L1MB7|LINE|L1	-66038.0	NM_001081403	225266.0	Mm.436836	NM_001081403	ENSMUSG00000042514	Klhl14	6330403N15Rik|AI785250|printor	kelch-like 14	protein-coding	0.0	0.0	0.0	0.0	4.0	0.0
Merged-chr1-37566470-2	chr1	37565970	37566970	+	801.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25454.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3658652-2	chr2	3658152	3659152	+	801.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54806.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112283320-2	chr5	112282820	112283820	+	801.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	B4A|SINE|B4	6629.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96457651-2	chr10	96457151	96458151	+	801.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	-159350.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59660663-2	chr9	59660163	59661163	+	801.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253883, intron 1 of 10)	intron (NM_001253883, intron 1 of 10)	4295.0	NM_011099	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47633660-2	chr6	47633160	47634160	+	801.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	21434.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165969685-3	chr2	165969172	165970172	+	801.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22965.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	6.5	10.5	12.0	4.0	22.5	7.0
Merged-chr1-172046532-2	chr1	172046032	172047032	+	801.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	11064.0	NM_010916	18071.0	Mm.2474	NM_010916	ENSMUSG00000051251	Nhlh1	Hen1|Nscl|Tal2|bHLHa35	nescient helix loop helix 1	protein-coding	10.5	11.5	0.0	2.5	3.0	0.0
Merged-chr11-53301870-2	chr11	53301370	53302370	+	801.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1391.0	NM_008300	15525.0	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109613155-2	chr11	109612655	109613655	+	801.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1766.0	NM_145940	52639.0	Mm.35817	NM_145940	ENSMUSG00000041895	Wipi1	4930533H01Rik|AW411817|D11Ertd498e	WD repeat domain, phosphoinositide interacting 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-41931417-2	chr17	41930917	41931917	+	801.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-384530.0	NM_028474	627626.0	Mm.390999	NM_028474	ENSMUSG00000042256	Ptchd4	3110082D06Rik|Gm321	patched domain containing 4	protein-coding	0.0	0.0	1.0	1.0	0.0	0.0
Merged-chr5-137082880-1	chr5	137082380	137083380	+	801.0	f1_balb.idr	Intergenic	ID_B1|SINE|B4	-10608.0	NM_008871	18787.0	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	0.0	0.0	0.5	0.0	0.0	3.0
Merged-chr6-124813194-2	chr6	124812694	124813694	+	801.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009415, intron 1 of 6)	intron (NM_009415, intron 1 of 6)	1102.0	NM_009415	21991.0	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|TIM|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53134970-2	chr15	53134470	53135470	+	801.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	(TCTA)n|Simple_repeat|Simple_repeat	211213.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-60841474-2	chr14	60840974	60841974	+	801.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027436, intron 14 of 18)	intron (NM_027436, intron 14 of 18)	56908.0	NR_040642	70478.0	Mm.274650	NM_027436	ENSMUSG00000021993	Mipep	5730405E07Rik|MIP	mitochondrial intermediate peptidase	protein-coding	10.5	5.5	0.0	0.5	1.5	3.0
Merged-chr19-21176121-4	chr19	21175618	21176618	+	801.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71408.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94314788-2	chr16	94314288	94315288	+	801.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1225.0	NM_139145	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85508471-2	chr12	85507971	85508971	+	801.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	34581.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61649340-1	chr14	61648840	61649840	+	801.0	f0_balb.idr	intron (NR_028264, intron 1 of 6)	CpG	-17230.0	NR_029733	387174.0		NR_029733	ENSMUSG00000093007	Mir15a	Mirn15a|mir-15a|mmu-mir-15a	microRNA 15a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-61157692-4	chr15	61157182	61158182	+	801.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-236412.0	NM_001081067	117586.0	Mm.291499	NM_001081067	ENSMUSG00000022347	A1bg	C44	alpha-1-B glycoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-80004746-2	chr2	80004246	80005246	+	801.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	34156.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-91194193-1	chr15	91193693	91194693	+	801.0	f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-2186.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27469469-2	chr2	27468969	27469969	+	801.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113573, intron 1 of 11)	intron (NM_001113573, intron 1 of 11)	5929.0	NM_023336	67382.0	Mm.28721	NM_023336	ENSMUSG00000026918	Brd3	2410084F24Rik|AW060456|Fsrg2|ORFX|RINGL3	bromodomain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-91364747-3	chr9	91364300	91365300	+	801.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009573, exon 1 of 3)	exon (NM_009573, exon 1 of 3)	999.0	NM_009573	22771.0	Mm.335350	NM_009573	ENSMUSG00000032368	Zic1	ZIC|ZNF201	zinc finger protein of the cerebellum 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40617281-2	chr9	40616698	40617698	+	801.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68766.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	3.5	14.5	2.0	3.5	21.5	10.0
Merged-chr2-36218260-2	chr2	36217760	36218760	+	801.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12166.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-66467446-1	chr18	66466946	66467946	+	801.0	f0_balb.idr	Intergenic	Lx6|LINE|L1	8842.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80259191-2	chr10	80258691	80259691	+	801.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347119, exon 4 of 6)	exon (NM_001347119, exon 4 of 6)	1821.0	NM_001347119	14431.0	Mm.7329	NM_010255	ENSMUSG00000020150	Gamt	AA571402|Spintz1	guanidinoacetate methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85304670-1	chr1	85304170	85305170	+	801.0	f1_balb.idr	Intergenic	Intergenic	-34104.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41301697-1	chr19	41301197	41302197	+	801.0	f1_c57bl6.idr	intron (NM_031376, intron 10 of 16)	ID_B1|SINE|B4	-37693.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.0	0.5	11.0	6.5	1.0	6.0
Merged-chr15-100131874-3	chr15	100131370	100132370	+	801.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 2 of 37)	intron (NM_001159361, intron 2 of 37)	-22526.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-31036-1	chr4	30536	31536	+	801.0	f1_c57bl6.idr	Intergenic	Intergenic	-3141047.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126851528-2	chr8	126851028	126852028	+	801.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151740, exon 2 of 2)	non-coding (NR_151740, exon 2 of 2)	2508.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	21.0	51.5	49.0	20.5	53.0	49.0
Merged-chr7-42450992-2	chr7	42450492	42451492	+	801.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2912.0	NM_027702	71162.0	Mm.158598	NM_027702	ENSMUSG00000030463	4933421I07Rik	-	RIKEN cDNA 4933421I07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25130458-2	chr7	25129958	25130958	+	801.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163556, intron 1 of 13)	intron (NM_001163556, intron 1 of 13)	2002.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111010747-2	chr10	111010247	111011247	+	801.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172554)	promoter-TSS (NM_172554)	-681.0	NM_172554	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	63.5	130.5	93.5	43.0	111.0	72.5
Merged-chr15-73727579-1	chr15	73727079	73728079	+	801.0	f0_balb.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	2649.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67356745-2	chr17	67356245	67357245	+	801.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2254.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68408325-4	chr11	68407826	68408826	+	801.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21500.0	NM_008744	18208.0	Mm.39095	NM_008744	ENSMUSG00000020902	Ntn1	AI561871|BC019633|Netrin-1	netrin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55465451-2	chr13	55464951	55465951	+	801.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001030296, intron 1 of 2)	intron (NM_001030296, intron 1 of 2)	1184.0	NM_001030296	432763.0	Mm.315457	NM_001030296	ENSMUSG00000034686	Prr7	XM_484263	proline rich 7 (synaptic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96551461-2	chr3	96550961	96551961	+	801.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6496.0	NM_023719	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	20.0	42.5	25.0	11.5	31.5	14.5
Merged-chr6-134607526-4	chr6	134607034	134608034	+	800.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	24954.0	NM_026345	67729.0	Mm.57648	NM_026345	ENSMUSG00000032718	Mansc1	9130403P13Rik	MANSC domain containing 1	protein-coding	3.0	2.5	3.5	11.0	0.0	1.0
Merged-chr15-101319401-2	chr15	101318872	101319872	+	800.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	26160.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91136730-3	chr2	91136233	91137233	+	800.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177720)	TTS (NM_001177720)	18589.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	2.5	4.0	6.5	2.0	6.5	2.0
Merged-chr9-3025122-3	chr9	3024656	3025656	+	800.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	13587.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171699207-3	chr1	171698717	171699717	+	800.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360767, intron 2 of 2)	intron (NM_001360767, intron 2 of 2)	17225.0	NM_001360767	12506.0	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	0.0	0.0	1.0	0.0	3.0	0.0
Merged-chr4-120949276-3	chr4	120948854	120949854	+	800.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001005788, exon 2 of 6)	exon (NM_001005788, exon 2 of 6)	2347.0	NM_001005788	381549.0	Mm.331840	NM_001005788	ENSMUSG00000064141	Zfp69	Gm1029|Krab2|Zfp63	zinc finger protein 69	protein-coding	10.0	11.5	12.5	6.5	9.5	10.5
Merged-chr12-83485981-3	chr12	83485496	83486496	+	800.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_058212, intron 1 of 8)	CpG	1740.0	NM_001267626	70127.0	Mm.151308	NM_058212	ENSMUSG00000021221	Dpf3	2810403B03Rik|6530402L11Rik|BAF45C|C78788|CERD4|cer-d4	D4, zinc and double PHD fingers, family 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123171794-3	chr5	123171275	123172275	+	800.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008277)	TTS (NM_008277)	10948.0	NM_008277	15445.0	Mm.439709	NM_008277	ENSMUSG00000029445	Hpd	4HPPD|Fla|Flp|Hppd|Laf	4-hydroxyphenylpyruvic acid dioxygenase	protein-coding	3.0	1.5	1.0	3.5	12.0	2.5
Merged-chr8-88242076-3	chr8	88241603	88242603	+	800.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164499, intron 2 of 11)	intron (NM_001164499, intron 2 of 11)	-30300.0	NM_007406	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	14.5	8.5	20.5	13.5	11.5	20.5
Merged-chr4-115709994-4	chr4	115709512	115710512	+	800.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28061.0	NM_172698	230648.0	Mm.283565	NM_172698	ENSMUSG00000034210	Efcab14	4732418C07Rik	EF-hand calcium binding domain 14	protein-coding	0.0	0.0	3.0	0.0	0.0	0.0
Merged-chr15-27988365-3	chr15	27987876	27988876	+	800.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	MTC|LTR|ERVL-MaLR	37472.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74414858-3	chr17	74414370	74415370	+	800.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252478, intron 10 of 13)	intron (NM_001252478, intron 10 of 13)	19262.0	NM_144798	210148.0	Mm.243943	NM_144798	ENSMUSG00000024069	Slc30a6	9530029F08Rik|ZnT6	solute carrier family 30 (zinc transporter), member 6	protein-coding	0.0	2.0	1.0	4.0	0.0	0.0
Merged-chr16-36666565-2	chr16	36666065	36667065	+	800.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019388)	promoter-TSS (NM_019388)	-488.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-89793330-2	chr9	89792830	89793830	+	800.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8998.0	NR_029570	387179.0		NR_029570	ENSMUSG00000065596	Mir184	Mirn184|mir-184|mmu-mir-184	microRNA 184	ncRNA	0.0	0.0	3.5	0.0	0.0	0.0
Merged-chr6-72550024-4	chr6	72549513	72550513	+	800.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271395, intron 1 of 9)	intron (NM_001271395, intron 1 of 9)	366.0	NM_001271395	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11588344-4	chr19	11587839	11588839	+	800.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026835, intron 5 of 6)	intron (NM_026835, intron 5 of 6)	16465.0	NM_026835	68774.0	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	4.5	28.0	35.5	13.5	21.5	24.5
Merged-chr6-24663652-3	chr6	24663093	24664093	+	800.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028459, intron 1 of 10)	intron (NM_028459, intron 1 of 10)	1402.0	NM_001167745	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122562683-3	chr6	122562188	122563188	+	800.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009645, exon 5 of 5)	3' UTR (NM_009645, exon 5 of 5)	8879.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	2.0	0.0	1.0	0.0	0.0	0.0
Merged-chr3-19955745-3	chr3	19955250	19956250	+	800.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1304.0	NM_001276250	12870.0	Mm.13787	NM_007752	ENSMUSG00000003617	Cp	D3Ertd555e	ceruloplasmin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16149406-3	chr7	16148904	16149904	+	800.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347561, intron 4 of 8)	intron (NM_001347561, intron 4 of 8)	19578.0	NM_148946	110891.0	Mm.241147	NM_148946	ENSMUSG00000030376	Slc8a2	Ncx2	solute carrier family 8 (sodium/calcium exchanger), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-24265197-4	chr19	24264723	24265723	+	800.75415	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008044, intron 4 of 4)	B3A|SINE|B2	15363.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	5.0	0.0	7.0	4.0	7.5	1.0
Merged-chr3-51337807-4	chr3	51337284	51338284	+	800.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 1 of 9)	intron (NM_023502, intron 1 of 9)	2860.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81195531-2	chr15	81195031	81196031	+	800.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A1|LTR|ERVL	4678.0	NR_015603	67638.0	Mm.390832	NM_026288	ENSMUSG00000047938	4930483J18Rik	-	RIKEN cDNA 4930483J18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32194956-4	chr16	32194450	32195450	+	800.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15150.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	15.0	16.5	9.0	8.0	29.0	18.5
Merged-chr16-14367037-4	chr16	14366475	14367475	+	800.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008576, intron 1 of 30)	L2|LINE|L2	5417.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	1.5	11.0	3.0	1.5	9.0	3.0
Merged-chr18-36750103-2	chr18	36749603	36750603	+	800.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011879, intron 8 of 19)	intron (NM_011879, intron 8 of 19)	5447.0	NM_011879	24010.0	Mm.30234	NM_011879	ENSMUSG00000024474	Ik	MuRED	IK cytokine	protein-coding	24.5	24.0	22.0	13.0	12.5	27.0
Merged-chr8-71660833-6	chr8	71660371	71661371	+	800.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 8 of 41)	intron (NM_001029873, intron 8 of 41)	10886.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	1.0	0.0	4.5	8.0	2.5	1.0
Merged-chr7-73563346-2	chr7	73562846	73563846	+	800.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4951.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101976764-4	chr15	101976263	101977263	+	800.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22476.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137609885-4	chr4	137609372	137610372	+	800.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355588, intron 6 of 26)	(TG)n|Simple_repeat|Simple_repeat	15700.0	NM_130879	170707.0	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	98.5	145.5	141.5	74.0	141.5	155.0
Merged-chr10-59295804-2	chr10	59295304	59296304	+	800.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27492.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120247344-4	chr1	120246768	120247768	+	800.733337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085409, intron 2 of 5)	L1MB7|LINE|L1	18012.0	NM_133186	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115705837-6	chr8	115705280	115706280	+	800.722229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001025577, exon 1 of 1)	exon (NM_001025577, exon 1 of 1)	1114.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74393385-5	chr1	74393007	74394007	+	800.714294	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029743)	promoter-TSS (NR_029743)	-803.0	NR_029743	387219.0		NR_029743	ENSMUSG00000065468	Mir26b	Mirn26b|mir-26b|mmu-mir-26b	microRNA 26b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112357764-2	chr5	112357264	112358264	+	800.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359853, intron 4 of 13)	intron (NM_001359853, intron 4 of 13)	-1731.0	NM_001039228	625424.0	Mm.389677	NM_001039228	ENSMUSG00000051503	Gm6583	EG625424	predicted gene 6583	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122475355-6	chr14	122474814	122475814	+	800.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045046)	promoter-TSS (NR_045046)	-70.0	NM_009574	22772.0	Mm.308936	NM_009574	ENSMUSG00000061524	Zic2	HPE5|Ku	zinc finger protein of the cerebellum 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20785487-1	chr14	20784987	20785987	+	800.666687	f0_balb.idr	intron (NM_001039139, intron 2 of 18)	intron (NM_001039139, intron 2 of 18)	8601.0	NM_001039138	12325.0	Mm.235182	NM_178597	ENSMUSG00000021820	Camk2g	Camkg	calcium/calmodulin-dependent protein kinase II gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134749459-4	chr4	134748978	134749978	+	800.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145554, intron 6 of 8)	intron (NM_145554, intron 6 of 8)	18526.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-65111671-3	chr12	65111197	65112197	+	800.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178912, intron 14 of 22)	RLTR18|LTR|ERVK	36091.0	NM_178912	104806.0	Mm.374847	NM_178912	ENSMUSG00000055884	Fancm	AI427100|C730036B14Rik|D12Ertd364e	Fanconi anemia, complementation group M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13462165-2	chr8	13461665	13462665	+	800.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001143671)	TTS (NM_001143671)	26706.0	NM_001143672	272465.0	Mm.250502	NM_001143671	ENSMUSG00000038457	Tmem255b	Fam70b|Gm687	transmembrane protein 255B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-113847675-2	chr2	113847182	113848182	+	800.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_181416, intron 1 of 11)	intron (NM_181416, intron 1 of 11)	979.0	NM_181416	228482.0	Mm.45753	NM_181416	ENSMUSG00000041219	Arhgap11a	6530401L14Rik|mKIAA0013	Rho GTPase activating protein 11A	protein-coding	3.5	28.5	36.0	5.5	10.5	16.0
Merged-chr7-141901831-2	chr7	141901331	141902331	+	800.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347562, intron 1 of 6)	intron (NM_001347562, intron 1 of 6)	630.0	NM_023764	54473.0	Mm.103551	NM_023764	ENSMUSG00000025139	Tollip	4930403G24Rik|4931428G15Rik	toll interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-89275194-2	chr4	89274694	89275694	+	800.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040654, intron 2 of 2)	intron (NM_001040654, intron 2 of 2)	6998.0	NM_001040654	12578.0	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin dependent kinase inhibitor 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117078200-2	chr11	117077700	117078700	+	800.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105853)	TTS (NR_105853)	852.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-33250260-3	chr4	33249645	33250645	+	800.6592410000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1358.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-84077523-3	chr4	84077050	84078050	+	800.638855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32671.0	NR_130998	78238.0	Mm.243903	NR_130998	ENSMUSG00000085217	6030471H07Rik	-	RIKEN cDNA 6030471H07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120621429-2	chr8	120620929	120621929	+	800.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308449, intron 2 of 3)	intron (NM_001308449, intron 2 of 3)	12953.0	NM_197988	68918.0	Mm.473736	NM_197988	ENSMUSG00000043687	1190005I06Rik	-	RIKEN cDNA 1190005I06 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84683754-4	chr18	84683265	84684265	+	800.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023149, intron 1 of 11)	B2_Mm2|SINE|B2	-1706.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73546721-3	chr7	73546221	73547221	+	800.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037569, intron 4 of 4)	intron (NR_037569, intron 4 of 4)	-4975.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5839654-5	chr19	5839033	5840033	+	800.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131212, exon 1 of 1)	non-coding (NR_131212, exon 1 of 1)	5945.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-23825950-2	chr14	23825450	23826450	+	800.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253364, intron 1 of 27)	intron (NM_001253364, intron 1 of 27)	178255.0	NM_001253375	16531.0	Mm.343607	NM_010610	ENSMUSG00000063142	Kcnma1	5730414M22Rik|BKCa|MaxiK|Slo|Slo1|mSlo|mSlo1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98694249-4	chr7	98693690	98694690	+	800.595825	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_144495, exon 1 of 1)	non-coding (NR_144495, exon 1 of 1)	8738.0	NR_144495	100040769.0	Mm.126401	NR_144495		Gm15506	-	predicted gene 15506	ncRNA	4.0	2.5	1.5	0.0	3.0	6.0
Merged-chr16-3703088-4	chr16	3702584	3703584	+	800.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	15040.0	NM_001161790	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8926142-2	chr3	8925642	8926642	+	800.571411	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001025261)	TTS (NM_001025261)	-2285.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21213111-4	chr5	21212636	21213636	+	800.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 5 of 26)	MTD|LTR|ERVL-MaLR	26869.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141294039-3	chr7	141293546	141294546	+	800.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007878, exon 3 of 4)	exon (NM_007878, exon 3 of 4)	2040.0	NM_007878	13491.0	Mm.41075	NM_007878	ENSMUSG00000025496	Drd4	AW125663|D4R|Drd-4	dopamine receptor D4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109008351-4	chr3	109007850	109008850	+	800.537476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163567, intron 1 of 10)	intron (NM_001163567, intron 1 of 10)	19257.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	4.5	12.5	3.5	6.0	7.0	6.5
Merged-chr1-191638931-4	chr1	191638437	191639437	+	800.520813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	63301.0	NM_001306204	77065.0	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	6.0	24.5	14.0	6.0	24.5	11.5
Merged-chr17-84115355-2	chr17	84114855	84115855	+	800.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36695.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-105989494-2	chr11	105988994	105989994	+	800.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_207624, exon 25 of 25)	3' UTR (NM_207624, exon 25 of 25)	-3800.0	NR_104047	100379610.0	Mm.754	NR_104047	ENSMUSG00000085297	Gm11651	-	predicted gene 11651	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124849902-2	chr6	124849402	124850402	+	800.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013534, intron 9 of 14)	intron (NM_013534, intron 9 of 14)	7785.0	NM_013534	14789.0	Mm.35708	NM_013534	ENSMUSG00000023191	P3h3	BC016431|Grcb|Leprel2	prolyl 3-hydroxylase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-61082926-2	chr19	61082379	61083379	+	800.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 11 of 15)	intron (NM_018869, intron 11 of 15)	57961.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	0.5	4.0	2.5	4.5	1.5	4.0
Merged-chr15-13384948-3	chr15	13384457	13385457	+	800.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-211282.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133612959-1	chr4	133612459	133613459	+	800.5	f1_c57bl6.idr	exon (NM_001017968, exon 6 of 8)	exon (NM_001017968, exon 6 of 8)	-10791.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	1.5	10.0	4.0	14.0	14.0	25.0
Merged-chr16-70297705-2	chr16	70297145	70298145	+	800.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-16304.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr18-47327217-3	chr18	47326715	47327715	+	800.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311097, intron 1 of 17)	intron (NM_001311097, intron 1 of 17)	41653.0	NM_018744	20358.0	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17734643-2	chr10	17734143	17735143	+	800.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G|LTR|ERVL-MaLR	11415.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.0	0.0	0.0	1.5	0.0	0.0
Merged-chr11-6601833-2	chr11	6601333	6602333	+	800.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081652, exon 2 of 8)	exon (NM_001081652, exon 2 of 8)	4221.0	NM_001081652	192950.0	Mm.337771	NM_001081652	ENSMUSG00000041073	Nacad	D230024G13Rik|mKIAA0363	NAC alpha domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70896207-2	chr8	70895707	70896707	+	800.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106034)	promoter-TSS (NR_106034)	-351.0	NR_002901	104370.0		NR_002901		Snora68	MBI-30|Rnu68	small nucleolar RNA, H/ACA box 68	snoRNA	2.5	4.0	6.5	2.0	4.0	6.5
Merged-chr5-44100843-2	chr5	44100343	44101343	+	800.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163577, intron 1 of 27)	CpG	893.0	NM_008935	19126.0	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	0.0	0.0	3.5	4.0	0.0	0.0
Merged-chr9-102784611-3	chr9	102784099	102785099	+	800.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44951.0	NR_033301	434510.0	Mm.387937	NM_001034892	ENSMUSG00000093812	Gm5627	EG434510	predicted gene 5627	ncRNA	0.0	0.0	0.0	0.0	10.0	0.0
Merged-chr2-112492596-2	chr2	112492097	112493097	+	800.5	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_028844)	promoter-TSS (NM_028844)	-367.0	NM_028844	74268.0	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	7.0	12.5	8.0	5.0	3.0	7.0
Merged-chr8-79354755-2	chr8	79354255	79355255	+	800.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 3 of 6)	intron (NM_008539, intron 3 of 6)	44713.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118677512-2	chr2	118677012	118678012	+	800.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145854, intron 1 of 9)	CpG	266.0	NM_001145854	214230.0	Mm.241857	NM_001033254	ENSMUSG00000074923	Pak6	4732456M09	p21 (RAC1) activated kinase 6	protein-coding	1.5	0.0	0.0	3.5	0.0	1.5
Merged-chr15-98930253-2	chr15	98929753	98930753	+	800.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4137.0	NM_011654	22143.0	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102320132-3	chr11	102319607	102320607	+	800.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1011.0	NM_011551	21429.0	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	0.0	0.0	6.0	0.5	0.0	1.5
Merged-chr17-56255571-2	chr17	56255071	56256071	+	800.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1222.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8437603-2	chr12	8437126	8438126	+	800.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62383.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	0.0	1.0	7.5	0.5	16.5	7.0
Merged-chr10-36268397-2	chr10	36267897	36268897	+	800.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-238410.0	NM_001253355	319415.0	Mm.332442	NM_001081208	ENSMUSG00000044499	Hs3st5	D930005L05Rik|Gm1151|Hs3ost5	heparan sulfate (glucosamine) 3-O-sulfotransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-75796164-4	chr13	75795602	75796602	+	800.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43783.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	7.0	20.0	20.0	1.5	17.5	5.5
Merged-chr3-60506882-2	chr3	60506364	60507364	+	800.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	5685.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0.0	2.5	10.0	5.5	10.0	11.5
Merged-chr16-35747560-2	chr16	35747060	35748060	+	800.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 2 of 8)	L1MC4a|LINE|L1	21796.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	8.0	3.0	8.0	2.0	6.0	1.5
Merged-chr7-45397262-2	chr7	45396762	45397762	+	800.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1520.0	NR_126538	20637.0	Mm.216386	NM_009224	ENSMUSG00000063511	Snrnp70	2700022N21Rik|3200002N22Rik|AI325098|R74807|Rnu1p70|Rnulp70|Snrp70|Srnp70|U1-70|U1-70K	small nuclear ribonucleoprotein 70 (U1)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46086587-2	chr19	46086087	46087087	+	800.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	10740.0	NM_001039351	70769.0	Mm.402190	NM_053086	ENSMUSG00000015176	Nolc1	NOPP130|NOPP140|P130	nucleolar and coiled-body phosphoprotein 1	protein-coding	0.0	0.0	4.5	0.0	0.0	0.0
Merged-chr19-21782992-2	chr19	21782492	21783492	+	800.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031997, intron 2 of 24)	intron (NM_031997, intron 2 of 24)	4652.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117031716-2	chr8	117031216	117032216	+	800.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 27 of 42)	ID_B1|SINE|B4	-38267.0	NM_026572	68133.0	Mm.258462	NM_026572	ENSMUSG00000034424	Gcsh	1100001L02Rik|5730591C18Rik	glycine cleavage system protein H (aminomethyl carrier)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25694777-2	chr14	25694277	25695277	+	800.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134084, intron 1 of 5)	intron (NM_134084, intron 1 of 5)	607.0	NM_134084	105675.0	Mm.41656	NM_134084	ENSMUSG00000021868	Ppif	AW457192|CyP-D|CyP-F|CypD|PPIase	peptidylprolyl isomerase F (cyclophilin F)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94810031-2	chr10	94809531	94810531	+	800.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 23 of 30)	intron (NM_018797, intron 23 of 30)	121241.0	NM_029852	77048.0	Mm.296971	NM_029852	ENSMUSG00000020024	Cep83	2600001G24Rik|4921537D05Rik|5730513H21Rik|Ccdc41	centrosomal protein 83	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-100161863-2	chr6	100161363	100162363	+	800.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125495.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43763595-1	chr13	43763095	43764095	+	800.5	f1_balb.idr	Intergenic	B1_Mus1|SINE|Alu	-21517.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	1.0	1.0	2.5	0.0	8.0	2.5
Merged-chr3-9853268-3	chr3	9852764	9853764	+	800.472229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19585.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	23.5	9.0	5.5	1.5	0.0	2.0
Merged-chr2-164487205-5	chr2	164486659	164487659	+	800.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001048229)	promoter-TSS (NM_001048229)	282.0	NM_001048228	52840.0	Mm.256927	NM_026797	ENSMUSG00000017734	Dbndd2	1110017A21Rik|2900022J10Rik|AU041050|AW048677|D2Bwg0891e|Nkip|R74724	dysbindin (dystrobrevin binding protein 1) domain containing 2	protein-coding	3.0	8.0	3.5	2.5	14.5	15.5
Merged-chr11-116108931-4	chr11	116108375	116109375	+	800.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205081, intron 1 of 5)	intron (NM_001205081, intron 1 of 5)	1360.0	NM_001205081	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111640491-3	chr13	111639975	111640975	+	800.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45703.0	NM_172593	218613.0	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122315147-3	chr8	122314668	122315668	+	800.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009569, intron 3 of 9)	intron (NM_009569, intron 3 of 9)	33027.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-71129123-4	chr9	71128614	71129614	+	800.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073483, intron 4 of 6)	B3|SINE|B2	33519.0	NM_001271843	64008.0	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr7-141559826-4	chr7	141559361	141560361	+	800.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-2319.0	NM_001357068	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-89830539-3	chr16	89830068	89831068	+	800.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 15 of 27)	intron (NM_009384, intron 15 of 27)	-12216.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-103703600-4	chr13	103703101	103704101	+	800.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136924, intron 1 of 3)	intron (NR_136924, intron 1 of 3)	4032.0	NR_136924	102632492.0	Mm.383874	NR_136924	ENSMUSG00000114206	Gm30551	Gm30710	predicted gene, 30551	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78448395-4	chr15	78447886	78448886	+	800.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355601, intron 10 of 17)	intron (NM_001355601, intron 10 of 17)	19822.0	NR_110357	72844.0	Mm.390816	NM_001081367	ENSMUSG00000033287	Kctd17	2900008M13Rik|AA414907|AW742389|N28155	potassium channel tetramerisation domain containing 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77976817-5	chr10	77976442	77977442	+	800.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1708.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38821048-5	chr16	38820487	38821487	+	800.400024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029042, intron 3 of 3)	intron (NM_029042, intron 3 of 3)	7762.0	NM_029042	74663.0	Mm.50263	NM_029042	ENSMUSG00000022798	4930435E12Rik	TSCPA	RIKEN cDNA 4930435E12 gene	protein-coding	3.5	13.5	11.5	2.0	27.0	12.5
Merged-chr15-98533324-3	chr15	98532753	98533753	+	800.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153345, intron 2 of 10)	intron (NR_153345, intron 2 of 10)	1016.0	NM_001359827	69612.0	Mm.229107	NM_133714	ENSMUSG00000022992	Kansl2	2310037I24Rik|B930009D17	KAT8 regulatory NSL complex subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110930619-4	chr7	110930129	110931129	+	800.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194464, intron 2 of 20)	intron (NM_194464, intron 2 of 20)	15558.0	NM_010826	17540.0	Mm.250023	NM_010826	ENSMUSG00000005611	Mrvi1	BB115629|Irag|Ris1	MRV integration site 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47647875-2	chr14	47647354	47648354	+	800.333374	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-1457.0	NM_001347527	16709.0	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	40.0	82.0	84.0	34.0	77.5	49.0
Merged-chr12-112594042-2	chr12	112593542	112594542	+	800.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_198411, intron 1 of 22)	intron (NM_198411, intron 1 of 22)	5258.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105570088-2	chr5	105569588	105570588	+	800.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	50617.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45742565-2	chr19	45742065	45743065	+	800.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166363, intron 1 of 4)	CpG	319.0	NM_001166361	14179.0	Mm.4012	NM_010205	ENSMUSG00000025219	Fgf8	Aigf|Fgf-8	fibroblast growth factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62278274-2	chr11	62277774	62278774	+	800.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_027198, intron 1 of 4)	B3|SINE|B2	3121.0	NM_027198	69747.0	Mm.141150	NM_027198	ENSMUSG00000014243	Zswim7	2410012H22Rik	zinc finger SWIM-type containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-64725423-3	chr14	64724934	64725934	+	800.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081177, intron 8 of 39)	LTR67B|LTR|ERVL	72903.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	2.0	3.0	0.5	0.0	0.5	3.0
Merged-chr11-33986665-3	chr11	33986176	33987176	+	800.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	LTR105_Mam|LTR|ERVL	6517.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67287995-3	chr10	67287507	67288507	+	800.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2726.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74641761-3	chr15	74641265	74642265	+	800.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5447.0	NM_001177437	69439.0	Mm.263708	NM_001177437	ENSMUSG00000022603	Mroh4	1700016M24Rik	maestro heat-like repeat family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112532907-3	chr13	112532401	112533401	+	800.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139299, intron 12 of 16)	intron (NM_139299, intron 12 of 16)	47761.0	NM_139299	218624.0	Mm.380801	NM_139299	ENSMUSG00000050377	Il31ra	CRL3|GLM-R|GPL|Glmr|NR10	interleukin 31 receptor A	protein-coding	6.0	9.0	5.5	0.0	4.5	3.0
Merged-chr12-102710820-3	chr12	102710305	102711305	+	800.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-5936.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30255943-3	chr14	30255394	30256394	+	800.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 3 of 46)	intron (NM_001083616, intron 3 of 46)	97592.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-25628643-3	chr19	25628170	25629170	+	800.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18133.0	NM_177360	240590.0	Mm.62785	NM_177360	ENSMUSG00000042372	Dmrt3	-	doublesex and mab-3 related transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-53870926-3	chr1	53870491	53871491	+	800.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 17 of 28)	MTB_Mm-int|LTR|ERVL-MaLR	21567.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	2.5	2.0	10.5	5.5	3.5	5.0
Merged-chr1-156491402-3	chr1	156490897	156491897	+	800.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17069.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	2.0	0.0	0.5	1.0	0.0	1.5
Merged-chr4-132569751-2	chr4	132569251	132570251	+	800.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081211, intron 1 of 1)	intron (NM_001081211, intron 1 of 1)	5684.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118695545-2	chr9	118695045	118696045	+	800.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 14 of 27)	MLT2D|LTR|ERVL	-16147.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21241512-4	chr11	21241016	21242016	+	800.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290628, intron 1 of 22)	intron (NM_001290628, intron 1 of 22)	2484.0	NM_001290628	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	34.0	96.0	59.0	29.0	58.5	56.0
Merged-chr14-121915906-3	chr14	121915375	121916375	+	800.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182806)	promoter-TSS (NM_182806)	-101.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	8.0	7.5	6.0	0.5	10.5	3.0
Merged-chr7-75645737-3	chr7	75645283	75646283	+	800.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	190249.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	6.5	24.5	29.5	25.5	33.5	26.5
Merged-chr11-97547105-5	chr11	97546607	97547607	+	800.266663	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 3 of 19)	CpG	28019.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	0.0	2.0	0.0	0.0	0.0	0.0
Merged-chr4-139293750-3	chr4	139293190	139294190	+	800.255554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_151463)	TTS (NR_151463)	17018.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	6.5	4.0	15.5	14.0	8.0	4.5
Merged-chr1-35811704-2	chr1	35811204	35812204	+	800.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-256696.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124468021-3	chr5	124467486	124468486	+	800.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030259, intron 3 of 3)	Tigger7|DNA|TcMar-Tigger	10249.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-82893691-2	chr13	82893191	82894191	+	800.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-195358.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-143349174-4	chr6	143348675	143349675	+	800.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103287.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94937080-4	chr11	94936563	94937563	+	800.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007742, intron 1 of 50)	intron (NM_007742, intron 1 of 50)	839.0	NM_007742	12842.0	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.0	0.0	0.5	0.0	0.0	2.0
Merged-chr19-10101850-4	chr19	10101344	10102344	+	800.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019699)	promoter-TSS (NM_019699)	-341.0	NM_019699	56473.0	Mm.38901	NM_019699	ENSMUSG00000024665	Fads2	2900042M13Rik|Fadsd2	fatty acid desaturase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-123200977-4	chr7	123200459	123201459	+	800.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13907.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-69884029-2	chr2	69883564	69884564	+	800.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_110977, intron 1 of 5)	B2_Mm2|SINE|B2	1551.0	NM_029280	75422.0	Mm.10508	NM_029280	ENSMUSG00000051730	Mettl5	2810410A08Rik	methyltransferase like 5	protein-coding	1.0	8.0	4.0	2.5	8.0	3.5
Merged-chr5-27194234-2	chr5	27193734	27194734	+	800.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_207282, intron 1 of 25)	MTE2b|LTR|ERVL-MaLR	-67701.0	NM_001136060	13483.0	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61453579-2	chr10	61453079	61454079	+	800.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010124)	promoter-TSS (NM_010124)	-910.0	NM_010124	13688.0	Mm.259516	NM_010124	ENSMUSG00000020091	Eif4ebp2	2810011I19Rik|4E-BP2|AA792569|BC010348|PHAS-II	eukaryotic translation initiation factor 4E binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57510910-4	chr9	57510418	57511418	+	800.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	6816.0	NM_133982	102614.0	Mm.274421	NM_133982	ENSMUSG00000062309	Rpp25	AI851155	ribonuclease P/MRP 25 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-10533772-4	chr18	10533280	10534280	+	800.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083628, intron 19 of 32)	intron (NM_001083628, intron 19 of 32)	76572.0	NM_001081222	77805.0	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-63875658-2	chr7	63875150	63876150	+	800.25	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-41207.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	7.5	0.0	5.0	7.5	9.5	5.5
Merged-chr6-148478771-3	chr6	148478282	148479282	+	800.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34430.0	NM_001347518	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55332834-3	chr19	55332325	55333325	+	800.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 3 of 8)	intron (NM_001360431, intron 3 of 8)	16768.0	NM_001293686	53611.0	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-77543536-3	chr8	77543031	77544031	+	800.216675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5866.0	NM_001081240	102182.0	Mm.197630	NM_178903	ENSMUSG00000037134	Prmt9	AI931714|Prmt10	protein arginine methyltransferase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-177191808-4	chr1	177191295	177192295	+	800.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011785, intron 1 of 12)	intron (NM_011785, intron 1 of 12)	56972.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132606359-3	chr2	132605879	132606879	+	800.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033469, intron 2 of 3)	intron (NR_033469, intron 2 of 3)	8183.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51388280-3	chr13	51387758	51388758	+	800.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-20360.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73445000-2	chr12	73444500	73445500	+	800.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35437.0	NR_046013	380765.0	Mm.490476	NR_046013	ENSMUSG00000056359	D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	0.0	1.0	0.0	3.5	0.0	0.0
Merged-chr17-86903799-3	chr17	86903291	86904291	+	800.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13557.0	NM_001277980	78469.0	Mm.67234	NM_030104	ENSMUSG00000037689	Tmem247	1700090G07Rik	transmembrane protein 247	protein-coding	2.0	10.5	0.0	0.0	1.0	1.5
Merged-chr6-116461048-3	chr6	116460540	116461540	+	800.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009662, exon 1 of 14)	5' UTR (NM_009662, exon 1 of 14)	138.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-33249376-3	chr4	33248868	33249868	+	800.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033225)	promoter-TSS (NM_001033225)	-581.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-82398317-4	chr8	82397818	82398818	+	800.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254747, intron 1 of 7)	intron (NM_001254747, intron 1 of 7)	4268.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	45.5	142.5	98.0	33.0	123.5	98.0
Merged-chr9-96487639-2	chr9	96487139	96488139	+	800.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B1|LTR|ERVK	-8964.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20661859-2	chr14	20661359	20662359	+	800.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001310431, exon 4 of 4)	exon (NM_001310431, exon 4 of 4)	2715.0	NM_001310432	68760.0	Mm.35789	NM_175132	ENSMUSG00000039376	Synpo2l	1110054M18Rik|Chap	synaptopodin 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51958553-4	chr13	51958055	51959055	+	800.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111880.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99470905-3	chr15	99470255	99471255	+	800.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029236, exon 2 of 2)	exon (NM_029236, exon 2 of 2)	3975.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	1.5	0.0	1.5	3.0	6.0	3.0
Merged-chr10-44454808-2	chr10	44454308	44455308	+	800.111084	f1_balb.idr|f1_c57bl6.idr	intron (NM_007548, intron 2 of 6)	intron (NM_007548, intron 2 of 6)	3940.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19590071-4	chr7	19589580	19590580	+	800.104187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_125836, intron 6 of 17)	intron (NR_125836, intron 6 of 17)	12793.0	NM_022409	63872.0	Mm.23310	NM_022409	ENSMUSG00000011267	Zfp296	2210018A16Rik|Znf296	zinc finger protein 296	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-79793002-5	chr7	79792537	79793537	+	800.085693	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008588, exon 1 of 2)	exon (NM_008588, exon 1 of 2)	553.0	NM_008588	17292.0	Mm.1404	NM_008588	ENSMUSG00000030544	Mesp1	bHLHc5	mesoderm posterior 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117420509-2	chr5	117420018	117421018	+	800.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	ORR1E|LTR|ERVL-MaLR	6516.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	8.5	3.0	5.0	5.5	6.5	1.5
Merged-chr2-80176652-4	chr2	80176210	80177210	+	800.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger5|DNA|TcMar-Tigger	-47052.0	NM_001355140	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.0	5.0	0.0	2.5	5.0	0.0
Merged-chr4-133156587-4	chr4	133156056	133157056	+	800.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	L2|LINE|L2	25923.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	107.0	336.5	221.5	83.5	143.5	153.0
Merged-chr1-107525803-4	chr1	107525296	107526296	+	800.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001174170)	TTS (NM_001174170)	-3207.0	NM_001160307	241197.0	Mm.123919	NM_198028	ENSMUSG00000092572	Serpinb10	9830131G07|BB233602|Serpinb10-ps	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-114997244-4	chr4	114996763	114997763	+	800.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2855.0	NM_001304559	20460.0	Mm.3988	NM_009185	ENSMUSG00000028718	Stil	Sil	Scl/Tal1 interrupting locus	protein-coding	0.0	1.0	1.0	0.0	0.0	0.0
Merged-chr18-75306172-2	chr18	75305672	75306672	+	800.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-8843.0	NR_045393	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	0.0	0.0	0.0	0.5	19.5	5.0
Merged-chr11-121790821-2	chr11	121790321	121791321	+	800.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39397.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-17998104-2	chr5	17997604	17998604	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 3 of 7)	intron (NM_001081143, intron 3 of 7)	35534.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-22190718-3	chr3	22190194	22191194	+	800.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 5 of 15)	intron (NM_030732, intron 5 of 15)	-60676.0	NR_004439	19784.0		NR_004439		Rprl2	RPRH3|Rmrp3	ribonuclease P RNA-like 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-88753850-1	chr18	88753350	88754350	+	800.0	f1_c57bl6.idr	Intergenic	RLTR40|LTR|ERVK	140357.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22496929-3	chr8	22496442	22497442	+	800.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011394, intron 1 of 10)	ORR1C2|LTR|ERVL-MaLR	-20063.0	NM_001146117	102032.0	Mm.378231	NM_001012667	ENSMUSG00000031534	Smim19	AI316807|BG694986|EST-c39	small integral membrane protein 19	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr10-96623838-1	chr10	96623338	96624338	+	800.0	f0_balb.idr	Intergenic	Intergenic	6837.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-44239486-2	chr17	44238941	44239941	+	800.0	f0_balb.idr|f1_balb.idr	intron (NM_172621, intron 2 of 5)	intron (NM_172621, intron 2 of 5)	50869.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	5.0	11.5	2.0	4.0	6.0	7.5
Merged-chr5-64808865-2	chr5	64808365	64809365	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	5342.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46481744-2	chr19	46481244	46482244	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 10 of 11)	intron (NM_001025391, intron 10 of 11)	-19904.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14702402-1	chr8	14701902	14702902	+	800.0	f0_balb.idr	intron (NM_172910, intron 5 of 15)	intron (NM_172910, intron 5 of 15)	-186134.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93691394-2	chr16	93690850	93691850	+	800.0	f0_balb.idr|f1_balb.idr	TTS (NM_173047)	TTS (NM_173047)	8131.0	NM_173047	109857.0	Mm.4512	NM_173047	ENSMUSG00000022947	Cbr3	1110001J05Rik|C81353	carbonyl reductase 3	protein-coding	3.0	4.5	12.0	0.0	3.0	1.5
Merged-chr18-35920430-2	chr18	35919930	35920930	+	800.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-44400.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-97849173-2	chr16	97848673	97849673	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359077, intron 1 of 23)	intron (NM_001359077, intron 1 of 23)	2054.0	NM_144789	114604.0	Mm.328741	NM_144789	ENSMUSG00000014039	Prdm15	C21orf83|E130018M06Rik|ORF62|Zfp298	PR domain containing 15	protein-coding	2.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79150073-2	chr8	79149573	79150573	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 8 of 14)	intron (NM_001294279, intron 8 of 14)	98510.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96080715-3	chr10	96080233	96081233	+	800.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	140070.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-105057997-2	chr9	105057497	105058497	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053159, intron 4 of 9)	RMER15|LTR|ERVL	4729.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	2.0	2.0	3.5	0.0	2.0	2.0
Merged-chr10-94928298-2	chr10	94927798	94928798	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 1 of 30)	intron (NM_018797, intron 1 of 30)	16280.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99111754-2	chr15	99111254	99112254	+	800.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	12270.0	NM_176835	72778.0	Mm.30544	NM_176835	ENSMUSG00000038009	Dnajc22	2810451A06Rik|AI506245	DnaJ heat shock protein family (Hsp40) member C22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-57740053-4	chr3	57739554	57740554	+	800.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130743, intron 1 of 9)	intron (NR_130743, intron 1 of 9)	3997.0	NR_130743	24017.0	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27445181-2	chr2	27444681	27445681	+	800.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001113574)	TTS (NM_001113574)	2745.0	NM_001360792	100504116.0	Mm.36529	NM_001360790		Brd3os	A230069D13|D2Bwg1423e|Gm20071	bromodomain containing 3, opposite strand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-100029632-2	chr6	100029132	100030132	+	800.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	257726.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156726591-2	chr2	156726091	156727091	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042487, intron 1 of 6)	intron (NM_001042487, intron 1 of 6)	5312.0	NM_001042487	228836.0	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	DLG associated protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-73254049-1	chr5	73253549	73254549	+	800.0	f1_balb.idr	intron (NM_028194, intron 1 of 62)	intron (NM_028194, intron 1 of 62)	2569.0	NM_028194	72313.0	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	7.0	0.0	3.0	10.0	9.0	1.5
Merged-chr12-8781846-2	chr12	8781346	8782346	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011519, intron 1 of 4)	intron (NM_011519, intron 1 of 4)	10450.0	NM_011519	20969.0	Mm.2580	NM_011519	ENSMUSG00000020592	Sdc1	AA408134|AA409076|CD138|Sstn|Synd|Synd1|syn-1	syndecan 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139705331-2	chr5	139704821	139705821	+	800.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	31012.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	17.0	24.5	29.5	11.5	20.5	21.5
Merged-chr5-124620660-2	chr5	124620160	124621160	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026486, intron 13 of 18)	intron (NM_026486, intron 13 of 18)	-8392.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105477185-3	chr8	105476687	105477687	+	800.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175160, intron 6 of 13)	intron (NM_175160, intron 6 of 13)	-5765.0	NM_026481	67971.0	Mm.29358	NM_026481	ENSMUSG00000014846	Tppp3	2700055K07Rik|CGI-38|Ceacam9|mmCGM8	tubulin polymerization-promoting protein family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-16089547-2	chr4	16089047	16090047	+	800.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74096.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-142994414-1	chr6	142993914	142994914	+	800.0	f0_balb.idr	Intergenic	Intergenic	-29962.0	NM_011374	20449.0	Mm.260838	NM_011374	ENSMUSG00000030283	St8sia1	9330109E03Rik|GD3S|Sia-T|Siat8|Siat8a	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119230980-2	chr11	119230480	119231480	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175430, intron 1 of 18)	MTC|LTR|ERVL-MaLR	2408.0	NM_175430	207607.0	Mm.189885	NM_175430	ENSMUSG00000039963	Ccdc40	B930008I02Rik	coiled-coil domain containing 40	protein-coding	0.0	0.0	0.0	0.0	5.0	0.0
Merged-chr17-87636829-3	chr17	87636294	87637294	+	800.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008532, exon 2 of 10)	5' UTR (NM_008532, exon 2 of 10)	815.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-123544597-3	chr1	123544106	123545106	+	800.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199021, intron 5 of 25)	intron (NM_199021, intron 5 of 25)	500953.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.0	5.0	0.0	3.0	1.5	0.0
Merged-chr3-142620159-4	chr3	142619671	142620671	+	800.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010260)	promoter-TSS (NM_010260)	-492.0	NM_010260	14469.0	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50308437-2	chr6	50307937	50308937	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027881, intron 17 of 21)	intron (NM_027881, intron 17 of 21)	-46668.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128841048-3	chr6	128840561	128841561	+	800.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14746.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61735512-2	chr11	61735012	61736012	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144806, intron 9 of 11)	intron (NM_144806, intron 9 of 11)	-14713.0	NM_001033227	109342.0	Mm.441070	NM_001033227	ENSMUSG00000042371	Slc5a10	C330021F16Rik|SGLT5	solute carrier family 5 (sodium/glucose cotransporter), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-69668766-2	chr18	69668266	69669266	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 15 of 19)	intron (NM_001361128, intron 15 of 19)	-256793.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59726666-2	chr9	59726166	59727166	+	800.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18902.0	NM_001033498	546134.0	Mm.297580	NM_001033498	ENSMUSG00000074259	Gramd2	BC064463|Gramd2a	GRAM domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-162568609-2	chr1	162568109	162569109	+	800.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR73|LTR|ERV1	-1906.0	NM_001356527	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	0.0	6.0	1.0	1.0	9.0	2.5
Merged-chr12-27312330-2	chr12	27311814	27312814	+	800.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	30404.0	NM_009234	20666.0	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	16.5	4.5	9.5	10.0	26.5	27.5
Merged-chr1-189873481-1	chr1	189872981	189873981	+	800.0	f0_balb.idr	3' UTR (NM_008976, exon 19 of 19)	3' UTR (NM_008976, exon 19 of 19)	48810.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	2.0	0.5	0.0	0.0	0.0	1.0
Merged-chr16-89873308-2	chr16	89872808	89873808	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 6 of 27)	intron (NM_009384, intron 6 of 27)	-54956.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116104545-2	chr9	116104045	116105045	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 5 of 6)	intron (NM_029575, intron 5 of 6)	70818.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-28005122-2	chr3	28004622	28005622	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 1 of 25)	intron (NM_008875, intron 1 of 25)	20951.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70697279-2	chr8	70696779	70697779	+	800.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010592)	promoter-TSS (NM_010592)	-460.0	NM_010592	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	29.0	67.0	40.5	35.5	84.0	31.0
Merged-chr9-59753548-2	chr9	59753048	59754048	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173018, intron 1 of 43)	intron (NM_173018, intron 1 of 43)	2374.0	NM_173018	270163.0	Mm.249545	NM_173018	ENSMUSG00000039585	Myo9a	4732465J09Rik|C130068I12Rik|C230003M11	myosin IXa	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118584938-2	chr9	118584438	118585438	+	800.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21771.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80625889-2	chr10	80625389	80626389	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134002, intron 1 of 10)	intron (NM_134002, intron 1 of 10)	3109.0	NM_134002	103236.0	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165655794-2	chr1	165655294	165656294	+	800.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178593, exon 6 of 7)	exon (NM_178593, exon 6 of 7)	-21253.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34057887-2	chr11	34057387	34058387	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 3 of 20)	L1MEc|LINE|L1	10959.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80123852-3	chr7	80123339	80124339	+	799.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8489.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	4.0	5.0	0.0	0.0	2.5	0.0
Merged-chr10-98917250-6	chr10	98916794	98917794	+	799.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	2142.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99330861-2	chr15	99330361	99331361	+	799.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310622, intron 5 of 25)	intron (NM_001310622, intron 5 of 25)	27577.0	NM_001348256	54614.0	Mm.358668	NM_018786	ENSMUSG00000023007	Prpf40b	2610317D23Rik|Hypc	pre-mRNA processing factor 40B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61092095-2	chr18	61091595	61092595	+	799.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13477.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82784801-4	chr18	82784245	82785245	+	799.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25706.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-16989773-3	chr10	16989272	16990272	+	799.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038020, intron 2 of 8)	intron (NR_038020, intron 2 of 8)	106010.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22987459-2	chr11	22986959	22987959	+	799.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3134.0	NM_009837	12464.0	Mm.296985	NM_009837	ENSMUSG00000007739	Cct4	2610204B21Rik|A45|C78323|Cctd	chaperonin containing Tcp1, subunit 4 (delta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70580204-2	chr11	70579704	70580704	+	799.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 1 of 30)	PB1|SINE|Alu	17323.0	NM_016713	50932.0	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	0.0	4.0	2.0	13.0	3.0	2.5
Merged-chr16-18090298-4	chr16	18089773	18090773	+	799.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1083.0	NM_011172	19125.0	Mm.28456	NM_011172	ENSMUSG00000003526	Prodh	Pro-1|Pro1|Ym24d07	proline dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129828250-2	chr4	129827750	129828750	+	799.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	7542.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	24.5	52.0	24.5	25.0	69.5	34.5
Merged-chr19-5659780-2	chr19	5659280	5660280	+	799.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164481, intron 4 of 17)	intron (NM_001164481, intron 4 of 17)	3927.0	NM_001164482	20469.0	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	3.0	0.5	0.5	0.0	0.0	3.0
Merged-chr11-78683690-2	chr11	78683190	78684190	+	799.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008702, intron 1 of 10)	intron (NM_008702, intron 1 of 10)	13735.0	NM_008702	18099.0	Mm.9001	NM_008702	ENSMUSG00000017376	Nlk	AI194375	nemo like kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9724358-3	chr3	9723866	9724866	+	799.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	109313.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-79533903-3	chr14	79533387	79534387	+	799.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	18213.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49755353-4	chr16	49754832	49755832	+	799.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028680, intron 6 of 10)	URR1A|DNA|hAT-Charlie	56038.0	NM_028680	73916.0	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-62635491-3	chr2	62634987	62635987	+	799.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027835, intron 2 of 15)	intron (NM_027835, intron 2 of 15)	10768.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135581300-3	chr7	135580795	135581795	+	799.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316678, intron 1 of 19)	intron (NM_001316678, intron 1 of 19)	-12186.0	NM_001316680	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-99932099-3	chr14	99931607	99932607	+	799.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010636, intron 5 of 6)	intron (NM_010636, intron 5 of 6)	217689.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29406135-4	chr2	29405639	29406639	+	799.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290490, intron 3 of 5)	RMER4A|LTR|ERVK	27625.0	NM_001290490	68975.0	Mm.330109	NM_026896	ENSMUSG00000026799	Med27	1500015J03Rik|2310042P07Rik|AA682045|Crsp8|D2Ertd434e	mediator complex subunit 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137820909-4	chr5	137820384	137821384	+	799.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360023, intron 16 of 16)	Lx8b|LINE|L1	15394.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-65786095-4	chr15	65785550	65786550	+	799.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356582)	promoter-TSS (NM_001356582)	-970.0	NM_133766	76740.0	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	6.5	4.5	8.0	8.0	7.5	10.0
Merged-chr6-127267033-4	chr6	127266538	127267538	+	799.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	40929.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116135801-3	chr6	116135304	116136304	+	799.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 2 of 5)	intron (NM_177412, intron 2 of 5)	57570.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47676722-3	chr17	47676224	47677224	+	799.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198421, intron 4 of 6)	intron (NM_198421, intron 4 of 6)	-10886.0	NR_045945	100415787.0	Mm.392206	NR_045945	ENSMUSG00000084880	Tomm6os	Gm14872|Prickle4os	translocase of outer mitochondrial membrane 6, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-15959086-3	chr3	15958592	15959592	+	799.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081687, intron 3 of 3)	intron (NM_001081687, intron 3 of 3)	47240.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	0.0	9.5	3.0	6.5	33.5	8.5
Merged-chr19-4865335-3	chr19	4864821	4865821	+	799.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013456, exon 12 of 21)	exon (NM_013456, exon 12 of 21)	10192.0	NM_019861	56464.0	Mm.29561	NM_019861	ENSMUSG00000083282	Ctsf	AI481912	cathepsin F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70476340-6	chr12	70475788	70476788	+	799.777771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037248, intron 2 of 4)	intron (NR_037248, intron 2 of 4)	23134.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-19747851-3	chr14	19747279	19748279	+	799.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3478.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0.0	0.0	4.0	5.0	1.0	0.5
Merged-chr7-30219601-5	chr7	30219349	30220349	+	799.771423	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11542.0	NM_001360648	66411.0	Mm.27947	NM_025548	ENSMUSG00000006095	Tbcb	2410007D12Rik|AU041393|CG22|CKAPI|Ckap1	tubulin folding cofactor B	protein-coding	15.5	18.5	24.0	13.5	13.5	10.5
Merged-chr4-132532814-4	chr4	132532371	132533371	+	799.7559809999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007512, intron 3 of 3)	intron (NM_007512, intron 3 of 3)	2543.0	NM_007512	11983.0	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	5.5	13.0	5.0	8.0	11.5	11.5
Merged-chr19-3626850-2	chr19	3626393	3627393	+	799.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008513, intron 7 of 22)	intron (NM_008513, intron 7 of 22)	-51144.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	15.0	17.0	2.0	9.5	7.0	13.5
Merged-chr12-103532959-4	chr12	103532427	103533427	+	799.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028980, intron 1 of 24)	intron (NM_028980, intron 1 of 24)	362.0	NM_028980	74521.0	Mm.248619	NM_028980	ENSMUSG00000021209	Ppp4r4	8430415E04Rik|mKIAA1622	protein phosphatase 4, regulatory subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-15563159-2	chr16	15562659	15563659	+	799.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159351, intron 2 of 2)	Lx4B|LINE|L1	31359.0	NM_001159351	70620.0	Mm.235407	NM_023585	ENSMUSG00000022674	Ube2v2	1110021H13Rik|4632410D19Rik|5730524P06Rik|6820402M05|AI848315|C81524|MMS2	ubiquitin-conjugating enzyme E2 variant 2	protein-coding	0.0	1.0	3.0	2.0	0.0	6.0
Merged-chr10-45020551-2	chr10	45020051	45021051	+	799.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46663.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-49608964-4	chr4	49608441	49609441	+	799.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11065.0	NM_025944	67063.0	Mm.454013	NM_025944	ENSMUSG00000039611	Tmem246	2810432L12Rik|9330170P15Rik|AI835809	transmembrane protein 246	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84063993-4	chr8	84063438	84064438	+	799.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-2898.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	6.0	15.5	9.0	10.5	3.5	15.5
Merged-chr10-61275947-4	chr10	61275457	61276457	+	799.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2519.0	NM_001081127	237360.0	Mm.333252	NM_001081127	ENSMUSG00000059901	Adamts14	Adamts-14|TS14	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95138381-2	chr8	95137881	95138881	+	799.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010631, intron 1 of 19)	intron (NM_010631, intron 1 of 19)	4159.0	NM_010631	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	1.0	4.0	4.0	6.5	13.5	3.0
Merged-chr11-78807591-3	chr11	78807096	78808096	+	799.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-18999.0	NM_001076681	66274.0	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-79487469-5	chr14	79486995	79487995	+	799.700012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 1 of 8)	intron (NM_007920, intron 1 of 8)	-6227.0	NM_018765	22380.0	Mm.476813	NM_018765	ENSMUSG00000022023	Wbp4	AW545037|BB101031|FBP21	WW domain binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55044859-4	chr1	55044366	55045366	+	799.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7904.0	NM_026424	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	1.5	4.5	5.5	11.0	1.0	5.0
Merged-chr1-155064267-2	chr1	155063767	155064767	+	799.666687	f1_balb.idr|f1_c57bl6.idr	intron (NR_151545, intron 6 of 6)	intron (NR_151545, intron 6 of 6)	18997.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80257757-1	chr12	80257257	80258257	+	799.666687	f0_balb.idr	intron (NM_134156, intron 1 of 20)	intron (NM_134156, intron 1 of 20)	2614.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74715365-3	chr17	74714834	74715834	+	799.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-2416.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	0.0	0.0	0.0	0.0	0.0	3.0
Merged-chr6-50245180-3	chr6	50244700	50245700	+	799.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018769, intron 3 of 9)	intron (NM_018769, intron 3 of 9)	16569.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122039449-2	chr14	122038949	122039949	+	799.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4775.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-186573378-2	chr1	186572878	186573878	+	799.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-14697.0	NR_131158	320449.0	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109755734-2	chr8	109755234	109756234	+	799.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-17995.0	NM_001080930	52335.0	Mm.276770	NM_001080930	ENSMUSG00000069895	Atxn1l	AW558552|Boat|C330011L24Rik|D6Mgi37|D8Ertd587e	ataxin 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67210145-4	chr10	67209673	67210673	+	799.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 3 of 25)	MTC|LTR|ERVL-MaLR	24423.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34193543-4	chr13	34193039	34194039	+	799.645813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 7 of 10)	intron (NM_001033167, intron 7 of 10)	30575.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	22.5	25.5	26.5	6.0	30.5	22.5
Merged-chr1-151035140-4	chr1	151034653	151035653	+	799.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41718.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98836791-2	chr13	98836291	98837291	+	799.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-21342.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81320223-2	chr7	81319723	81320723	+	799.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 16 of 21)	intron (NM_008803, intron 16 of 21)	25011.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-28425575-3	chr10	28425084	28426084	+	799.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359356, intron 7 of 30)	MTEa|LTR|ERVL-MaLR	-242776.0	NM_001305663	210757.0	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122826462-4	chr6	122825870	122826870	+	799.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021899, intron 1 of 10)	intron (NM_021899, intron 1 of 10)	-5007.0	NR_106090	102465710.0		NR_106090	ENSMUSG00000106580	Mir7231	mmu-mir-7231	microRNA 7231	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122490907-2	chr14	122490454	122491454	+	799.583374	f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 1 of 24)	CpG	6589.0	NR_153443	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-142988931-4	chr6	142988433	142989433	+	799.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24481.0	NM_011374	20449.0	Mm.260838	NM_011374	ENSMUSG00000030283	St8sia1	9330109E03Rik|GD3S|Sia-T|Siat8|Siat8a	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70203528-3	chr14	70203044	70204044	+	799.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011366, intron 1 of 20)	intron (NM_011366, intron 1 of 20)	1079.0	NM_001271408	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71535917-3	chr8	71535521	71536521	+	799.550293	f1_balb.idr|f1_c57bl6.idr	intron (NM_198095, intron 2 of 4)	intron (NM_198095, intron 2 of 4)	1416.0	NM_198095	69550.0	Mm.260325	NM_198095	ENSMUSG00000046718	Bst2	2310015I10Rik|Bst-2|C87040|CD317|DAMP-1|GREG	bone marrow stromal cell antigen 2	protein-coding	0.0	0.0	8.5	0.0	6.0	3.0
Merged-chr9-110530814-4	chr9	110530308	110531308	+	799.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1789.0	NM_001081340	235626.0	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-6515092-4	chr18	6514600	6515600	+	799.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007935, intron 1 of 13)	intron (NM_007935, intron 1 of 13)	1008.0	NM_007935	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	20.0	62.5	50.5	21.5	55.0	28.0
Merged-chr11-62006628-6	chr11	62006206	62007206	+	799.527771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310526, intron 1 of 7)	intron (NM_001310526, intron 1 of 7)	49943.0	NM_001310526	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50018962-4	chr11	50018469	50019469	+	799.512512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6362.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-57175457-2	chr2	57174957	57175957	+	799.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040356, intron 1 of 2)	intron (NR_040356, intron 1 of 2)	6297.0	NR_040356	767815.0	Mm.188065	NR_040356	ENSMUSG00000084938	BB557941	-	expressed sequence BB557941	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103131003-2	chr11	103130503	103131503	+	799.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2336.0	NM_001130516	71059.0	Mm.273871	NM_027658	ENSMUSG00000043372	Hexim2	4933402L21Rik	hexamethylene bis-acetamide inducible 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32776746-2	chr2	32776246	32777246	+	799.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025619)	TTS (NM_025619)	925.0	NM_178595	329384.0	Mm.268037	NM_178595	ENSMUSG00000053746	Ptrh1	2210013M04Rik|AW046744	peptidyl-tRNA hydrolase 1 homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-66215619-2	chr2	66215119	66216119	+	799.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001047604, intron 19 of 28)	intron (NM_001047604, intron 19 of 28)	40998.0	NM_001047604	73668.0	Mm.250868	NM_001047604	ENSMUSG00000034848	Ttc21b	2410066K11Rik|Thm1|aln|mKIAA1992	tetratricopeptide repeat domain 21B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10857664-2	chr19	10857164	10858164	+	799.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133804)	TTS (NM_133804)	12115.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137528909-2	chr5	137528409	137529409	+	799.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_031408)	TTS (NM_031408)	685.0	NR_105846	102465227.0		NR_105846	ENSMUSG00000098597	Mir6418	Gm27629|mir-6418|mmu-mir-6418	microRNA 6418	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85270148-1	chr1	85269648	85270648	+	799.5	f1_balb.idr	5' UTR (NM_001037909, exon 1 of 7)	5' UTR (NM_001037909, exon 1 of 7)	418.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43452457-2	chr4	43451957	43452957	+	799.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_007654, exon 5 of 9)	exon (NM_007654, exon 5 of 9)	2169.0	NM_001110320	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9895160-2	chr19	9894660	9895660	+	799.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016692, intron 2 of 17)	intron (NM_016692, intron 2 of 17)	4373.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.0	0.0	13.0	1.5	10.5	0.0
Merged-chr10-25441517-2	chr10	25441017	25442017	+	799.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013511, intron 1 of 19)	intron (NM_013511, intron 1 of 19)	33149.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0.5	0.0	0.5	0.5	0.0	0.5
Merged-chr13-60725929-2	chr13	60725410	60726410	+	799.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001285917, exon 13 of 27)	exon (NM_001285917, exon 13 of 27)	60454.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	2.5	5.0	3.0	3.5	13.0	4.5
Merged-chr13-52654638-2	chr13	52654138	52655138	+	799.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57756.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-143414412-2	chr4	143413912	143414912	+	799.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355724, intron 1 of 3)	intron (NM_001355724, intron 1 of 3)	1986.0	NM_001355724	242736.0	Mm.275953	NM_172877	ENSMUSG00000046862	Pramef8	4732496O08Rik|AU023234	PRAME family member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91097845-4	chr2	91097313	91098313	+	799.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011355, intron 1 of 4)	intron (NM_011355, intron 1 of 4)	1135.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	32.5	73.5	76.5	27.5	108.5	62.0
Merged-chr7-127942284-2	chr7	127941784	127942784	+	799.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001319147, intron 5 of 14)	B2_Mm2|SINE|B2	4441.0	NM_001319147	77613.0	Mm.334253	NM_001081374	ENSMUSG00000070371	Prss36	C330007D15Rik	protease, serine 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-102724244-2	chr3	102723744	102724744	+	799.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040588, intron 3 of 3)	intron (NR_040588, intron 3 of 3)	-10526.0	NM_027533	70747.0	Mm.27469	NM_027533	ENSMUSG00000027858	Tspan2	6330415F13Rik|B230119D02Rik|tspan-2	tetraspanin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55442661-2	chr13	55442129	55443129	+	799.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2443.0	NM_001286063	26385.0	Mm.10193	NM_011938	ENSMUSG00000074886	Grk6	Gprk6	G protein-coupled receptor kinase 6	protein-coding	3.5	14.5	1.0	2.5	7.5	6.5
Merged-chr17-29430292-2	chr17	29429792	29430792	+	799.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60753.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.0	0.0	0.0	1.0	3.0	0.0
Merged-chr9-13540155-1	chr9	13539655	13540655	+	799.5	f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-79834.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	27.0	8.0	19.5	9.5	5.5	9.0
Merged-chr13-45107628-2	chr13	45107086	45108086	+	799.5	f0_balb.idr|f1_balb.idr	Intergenic	ID_B1|SINE|B4	-105490.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.0	0.0	1.5	34.5	35.0	67.0
Merged-chr15-82349081-2	chr15	82348581	82349581	+	799.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026914)	TTS (NM_026914)	3035.0	NM_026914	69029.0	Mm.260042	NM_026914	ENSMUSG00000022452	Smdt1	1500032L24Rik|Emre	single-pass membrane protein with aspartate rich tail 1	protein-coding	5.0	0.0	3.5	5.5	0.0	1.0
Merged-chr17-70845080-2	chr17	70844580	70845580	+	799.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009372, exon 3 of 3)	exon (NM_009372, exon 3 of 3)	1697.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.0	1.5	0.5	1.5	0.0	4.0
Merged-chr15-6429698-2	chr15	6429198	6430198	+	799.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_023118, exon 10 of 15)	exon (NM_023118, exon 10 of 15)	-15635.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-103091550-2	chr9	103091050	103092050	+	799.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20524.0	NM_173781	270192.0	Mm.490252	NM_173781	ENSMUSG00000032549	Rab6b	9630015C03|AI844641|C330006L04Rik|D9Bwg0185e	RAB6B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-9056655-2	chr5	9056155	9057155	+	799.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44082.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128371235-2	chr10	128370735	128371735	+	799.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1198.0	NM_001081040	210582.0	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126149195-2	chr4	126148695	126149695	+	799.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172145, intron 2 of 2)	CpG-10311	1192.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-117128004-2	chr13	117127504	117128504	+	799.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2021.0	NR_046023	623312.0	Mm.131279	NR_046023	ENSMUSG00000114792	Gm6416	-	predicted gene 6416	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102296135-3	chr12	102295640	102296640	+	799.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	12499.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	1.5	15.0	16.5	18.0	39.5	42.0
Merged-chr17-35270078-2	chr17	35269578	35270578	+	799.450012	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21A|LTR|ERV1	6955.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	10.5	13.0	12.5	2.0	0.0	2.5
Merged-chr13-20099710-4	chr13	20099203	20100203	+	799.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	9196.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	6.5	10.0	8.0	9.0	4.0	7.5
Merged-chr12-84148267-3	chr12	84147702	84148702	+	799.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163502)	TTS (NM_001163502)	287.0	NM_027438	70481.0	Mm.444348	NM_027438	ENSMUSG00000054383	Pnma1	5730402C15Rik	paraneoplastic antigen MA1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-64949017-3	chr14	64948362	64949362	+	799.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 1 of 9)	intron (NM_177338, intron 1 of 9)	995.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	28.0	20.5	13.5	7.5	27.5	4.5
Merged-chr18-39666365-3	chr18	39665869	39666869	+	799.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107128.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0.0	8.5	0.0	0.5	4.5	0.0
Merged-chr1-52703318-4	chr1	52702832	52703832	+	799.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357464, intron 2 of 7)	intron (NM_001357464, intron 2 of 7)	23986.0	NM_178081	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	14.5	3.5	3.5	0.0	5.0	0.0
Merged-chr11-87109883-2	chr11	87109383	87110383	+	799.416687	f1_balb.idr|f1_c57bl6.idr	intron (NM_025377, intron 1 of 3)	CpG	622.0	NM_025377	66140.0	Mm.45008	NM_025377	ENSMUSG00000020492	Ska2	1110001A07Rik|C78640|Fam33a	spindle and kinetochore associated complex subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46759672-2	chr19	46759172	46760172	+	799.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1937.0	NM_033569	94219.0	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	5.0	17.5	7.0	5.0	17.0	9.0
Merged-chr9-20467291-3	chr9	20466802	20467802	+	799.399963	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR55|LTR|ERVL?	-7142.0	NM_001357809	22688.0	Mm.107441	NM_011753	ENSMUSG00000063108	Zfp26	5033428C05Rik|KRAB15|Zfp-26|Zfp70|Zfp81-rs1|mKIAA4196|mkr-3|mszf14|mszf52	zinc finger protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-37806298-3	chr18	37805809	37806809	+	799.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033581)	promoter-TSS (NM_033581)	-101.0	NM_033581	93706.0	Mm.247203	NM_033581	ENSMUSG00000102918	Pcdhgc3	PC43|Pcdh2	protocadherin gamma subfamily C, 3	protein-coding	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr2-133442765-3	chr2	133442245	133443245	+	799.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109414.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84183000-3	chr1	84182493	84183493	+	799.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003948, intron 1 of 2)	intron (NM_001003948, intron 1 of 2)	35968.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54960102-4	chr6	54959536	54960536	+	799.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172729, intron 1 of 11)	intron (NM_172729, intron 1 of 11)	11625.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	2.5	9.5	6.0	0.0	10.5	4.5
Merged-chr18-11658391-5	chr18	11658080	11659080	+	799.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081223, intron 1 of 18)	B1_Mus2|SINE|Alu	1231.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	1.5	8.5	21.5	0.0	3.0	1.5
Merged-chr7-126487855-2	chr7	126487355	126488355	+	799.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172745, intron 2 of 9)	intron (NM_172745, intron 2 of 9)	500.0	NM_001163713	233870.0	Mm.197829	NM_172745	ENSMUSG00000073838	Tufm	2300002G02Rik|C76308|C76389|EF-TuMT|EFTU	Tu translation elongation factor, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119991923-2	chr4	119991422	119992422	+	799.333374	f0_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	-169284.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr19-34525541-2	chr19	34525041	34526041	+	799.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_021460, intron 1 of 9)	intron (NM_021460, intron 1 of 9)	1933.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	19.5	72.0	49.0	19.5	73.0	48.5
Merged-chr2-154303008-2	chr2	154302508	154303508	+	799.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4236.0	NM_001025574	433492.0	Mm.330682	NM_001025574	ENSMUSG00000067996	Bpifb9b	5430413K10Rik|AI413838	BPI fold containing family B, member 9B	protein-coding	7.0	9.5	0.5	0.0	3.0	0.0
Merged-chr19-5962230-3	chr19	5961678	5962678	+	799.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 1 of 17)	B2_Mm1t|SINE|B2	2028.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-130372293-3	chr1	130371775	130372775	+	799.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50549.0	NR_151525	102640368.0		NR_151525	ENSMUSG00000087691	Gm15674	-	predicted gene 15674	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45478963-3	chr4	45478412	45479412	+	799.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 2 of 5)	intron (NM_001033306, intron 2 of 5)	51916.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182868072-4	chr1	182867599	182868599	+	799.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356462, intron 5 of 8)	intron (NM_001356462, intron 5 of 8)	-86689.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37466599-3	chr1	37466119	37467119	+	799.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 5 of 15)	intron (NM_173870, intron 5 of 15)	21986.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35667082-2	chr17	35666582	35667582	+	799.333313	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010364)	TTS (NM_010364)	510.0	NM_175137	68915.0	Mm.32002	NM_175137	ENSMUSG00000038838	Vars2	1190004I24Rik|Vars2l|mKIAA1885	valyl-tRNA synthetase 2, mitochondrial	protein-coding	18.0	4.0	7.5	0.0	4.5	6.0
Merged-chr11-80163640-3	chr11	80163152	80164152	+	799.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 5 of 10)	intron (NM_172133, intron 5 of 10)	9490.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-174069825-4	chr2	174069318	174070318	+	799.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7233.0	NM_172675	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	7.0	5.5	17.5	13.0	17.0	24.0
Merged-chr12-99639302-3	chr12	99638788	99639788	+	799.299988	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-11314.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61679608-2	chr14	61679108	61680108	+	799.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	2765.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125476431-2	chr5	125475931	125476931	+	799.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_030210, intron 1 of 17)	intron (NM_030210, intron 1 of 17)	558.0	NM_030210	78894.0	Mm.431573	NM_030210	ENSMUSG00000029482	Aacs	2210408B16Rik|SUR5	acetoacetyl-CoA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-28573576-4	chr13	28573074	28574074	+	799.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045054, intron 6 of 7)	intron (NR_045054, intron 6 of 7)	137299.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46514301-2	chr19	46513801	46514801	+	799.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 3 of 5)	ID_B1|SINE|B4	12653.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	7.0	3.0	2.5	1.5	0.0
Merged-chr2-145870398-1	chr2	145869898	145870898	+	799.25	f0_balb.idr	intron (NM_028724, intron 9 of 12)	intron (NM_028724, intron 9 of 12)	-32843.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	7.5	20.0	14.5	11.0	35.5	20.0
Merged-chr3-65391790-1	chr3	65391290	65392290	+	799.25	f0_balb.idr	intron (NM_026155, intron 1 of 4)	intron (NM_026155, intron 1 of 4)	763.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	19.5	56.5	66.0	25.5	76.5	54.0
Merged-chr5-103778423-4	chr5	103777944	103778944	+	799.229126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080798, intron 1 of 19)	intron (NM_001080798, intron 1 of 19)	23871.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-13787108-4	chr18	13786518	13787518	+	799.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360804, intron 5 of 7)	intron (NM_001360804, intron 5 of 7)	185715.0	NM_001360804	225207.0	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding	0.0	1.0	4.5	0.0	1.0	3.5
Merged-chr6-116016539-3	chr6	116016045	116017045	+	799.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21540.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62478273-3	chr18	62477805	62478805	+	799.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65547.0	NM_001361091	107035.0	Mm.21295	NM_134136	ENSMUSG00000042211	Fbxo38	6030410I24Rik|AU044865|AW214031|Moka|SP329	F-box protein 38	protein-coding	6.5	33.5	19.5	7.0	2.5	9.5
Merged-chr15-80254407-4	chr15	80253924	80254924	+	799.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287180)	promoter-TSS (NM_001287180)	-760.0	NM_001287180	11911.0	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	188.5	497.0	418.5	190.5	465.5	450.0
Merged-chr11-106355775-4	chr11	106355210	106356210	+	799.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-6320.0	NM_133199	110880.0	Mm.432528	NM_133199	ENSMUSG00000001027	Scn4a	Nav1.4|SkM1|mH2	sodium channel, voltage-gated, type IV, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105534121-3	chr8	105533622	105534622	+	799.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013477, intron 2 of 7)	intron (NM_013477, intron 2 of 7)	15376.0	NM_008289	15484.0	Mm.5079	NM_008289	ENSMUSG00000031891	Hsd11b2	11HSD2	hydroxysteroid 11-beta dehydrogenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-25314164-3	chr5	25313680	25314680	+	799.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081383, exon 36 of 59)	exon (NM_001081383, exon 36 of 59)	67807.0	NM_001359890	231050.0	Mm.246718	NM_144908	ENSMUSG00000038072	Galnt11	A430075I06Rik|AI648252|E430002F06Rik	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-88798683-3	chr18	88798180	88799180	+	799.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95527.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-12903785-3	chr7	12903288	12904288	+	799.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001001447, exon 2 of 3)	exon (NM_001001447, exon 2 of 3)	5979.0	NM_001290441	232878.0	Mm.40706	NM_001001447	ENSMUSG00000054715	Zscan22	AW227621|D530006B18Rik|Hkr2	zinc finger and SCAN domain containing 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50226568-2	chr11	50226068	50227068	+	799.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_145926, intron 1 of 14)	intron (NM_145926, intron 1 of 14)	1233.0	NM_145926	103534.0	Mm.86759	NM_145926	ENSMUSG00000036620	Mgat4b	AA407995|GnTIVb	mannoside acetylglucosaminyltransferase 4, isoenzyme B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96663805-4	chr3	96663364	96664364	+	799.145813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001302471, exon 30 of 30)	3' UTR (NM_001302471, exon 30 of 30)	-6267.0	NM_001356539	213121.0	Mm.39732	NM_001081139	ENSMUSG00000038354	Ankrd35	4732436F15Rik	ankyrin repeat domain 35	protein-coding	4.0	9.0	3.5	3.5	1.5	6.5
Merged-chr12-33035938-3	chr12	33035433	33036433	+	799.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024478, intron 18 of 19)	intron (NM_001024478, intron 18 of 19)	56942.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	3.5	0.0	1.0	0.0	9.0	0.0
Merged-chr15-33687668-4	chr15	33687120	33688120	+	799.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001085421, exon 1 of 1)	exon (NM_001085421, exon 1 of 1)	263.0	NM_001085421	239364.0	Mm.60794	NM_001085421	ENSMUSG00000038984	Tspyl5	6330530B20|E130308C19Rik	testis-specific protein, Y-encoded-like 5	protein-coding	0.0	2.0	0.0	0.0	1.0	0.0
Merged-chr3-52300155-2	chr3	52299655	52300655	+	799.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_019739, intron 1 of 2)	intron (NM_019739, intron 1 of 2)	31818.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79926482-4	chr10	79925931	79926931	+	799.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007880)	promoter-TSS (NM_007880)	-612.0	NM_001288626	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	1.0	1.0	0.0	1.0	1.0	0.0
Merged-chr2-45056233-2	chr2	45055733	45056733	+	799.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-33056.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36242298-4	chr18	36241780	36242780	+	799.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38882.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-104460467-3	chr14	104459981	104460981	+	799.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7518.0	NM_011143	18996.0	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32170954-3	chr4	32170427	32171427	+	799.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	206820.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	9.5	21.0	8.0	2.0	1.0	9.5
Merged-chr4-59188748-3	chr4	59188237	59189237	+	799.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011673)	promoter-TSS (NM_011673)	-813.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	12.5	16.5	13.0	11.5	13.0	12.0
Merged-chr8-14652962-3	chr8	14652487	14653487	+	799.083313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-235549.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	11.5	14.5	16.0	10.5	0.0	6.0
Merged-chr10-126869819-4	chr10	126869329	126870329	+	799.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026858, intron 5 of 5)	intron (NM_026858, intron 5 of 5)	31542.0	NM_026858	68876.0	Mm.276769	NM_026858	ENSMUSG00000025436	Atp23	1110068E08Rik|2410012H02Rik|Xrcc6bp1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84428834-3	chr1	84428303	84429303	+	799.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152915, intron 8 of 12)	intron (NM_152915, intron 8 of 12)	-144158.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100322763-4	chr11	100322256	100323256	+	799.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011508)	TTS (NM_011508)	2807.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46607745-3	chr4	46607208	46608208	+	799.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198664, intron 10 of 12)	intron (NM_198664, intron 10 of 12)	-5779.0	NM_001164804	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-178019699-2	chr2	178019199	178020199	+	799.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45-int|LTR|ERVK	-3585.0	NM_001177400	626848.0	Mm.422604	NM_001177399	ENSMUSG00000074519	Zfp971	Etohi1	zinc finger protein 971	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-40789432-2	chr1	40788932	40789932	+	799.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172499, intron 1 of 5)	intron (NM_172499, intron 1 of 5)	1225.0	NM_172499	211798.0	Mm.235443	NM_172499	ENSMUSG00000041945	Mfsd9	4931419K03Rik	major facilitator superfamily domain containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-120313934-2	chr13	120313434	120314434	+	799.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2928.0	NM_153523	236219.0	Mm.302175	NM_153523	ENSMUSG00000095821	Tcstv3	-	2-cell-stage, variable group, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-45652441-2	chr15	45651941	45652941	+	799.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-537507.0	NM_026200	67498.0	Mm.300079	NM_026200	ENSMUSG00000022342	Kcnv1	2700023A03Rik|vibe	potassium channel, subfamily V, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139720612-2	chr5	139720112	139721112	+	799.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_174850, intron 2 of 16)	intron (NM_174850, intron 2 of 16)	15721.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-57602053-3	chr8	57601553	57602553	+	799.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 1 of 11)	intron (NM_001167981, intron 1 of 11)	-49700.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28299394-2	chr7	28298894	28299894	+	799.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007866, intron 3 of 8)	intron (NM_007866, intron 3 of 8)	2391.0	NM_007866	13389.0	Mm.12896	NM_007866	ENSMUSG00000003436	Dll3	pu|pudgy	delta like canonical Notch ligand 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100549376-1	chr5	100548876	100549876	+	799.0	f1_c57bl6.idr	Intergenic	Intergenic	22829.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	2.0	10.5	1.0	0.0	1.0	5.0
Merged-chr5-139452764-2	chr5	139452264	139453264	+	799.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	7770.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54642523-2	chr14	54642016	54643016	+	799.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105913)	TTS (NR_105913)	594.0	NR_105913	102466771.0		NR_105913	ENSMUSG00000106169	Mir6948	mmu-mir-6948	microRNA 6948	ncRNA	2.0	3.5	0.5	0.5	1.0	0.5
Merged-chr8-91136697-1	chr8	91136197	91137197	+	799.0	f1_c57bl6.idr	Intergenic	Intergenic	-1203.0	NM_010241	14339.0	Mm.324588	NM_010241	ENSMUSG00000031667	Aktip	AL023020|Fif|Ft|Ft1|Fts	thymoma viral proto-oncogene 1 interacting protein	protein-coding	1.0	0.0	0.5	4.0	0.0	0.0
Merged-chr14-30603240-2	chr14	30602740	30603740	+	799.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 9 of 17)	RSINE1|SINE|B4	7070.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	1.0	2.0	4.0	5.0	9.5	0.0
Merged-chr5-105293113-3	chr5	105292678	105293678	+	799.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194336, intron 1 of 10)	intron (NM_194336, intron 1 of 10)	521.0	NM_194336	100702.0	Mm.491210	NM_194336	ENSMUSG00000104713	Gbp6	AI595338|Mpa2l	guanylate binding protein 6	protein-coding	78.0	204.0	118.0	76.5	206.0	109.0
Merged-chr1-185350528-2	chr1	185350026	185351026	+	799.0	f0_balb.idr|f1_balb.idr	intron (NM_001347210, intron 7 of 9)	intron (NM_001347210, intron 7 of 9)	-12518.0	NM_029735	107508.0	Mm.154511	NM_029735	ENSMUSG00000026615	Eprs	2410081F06Rik|3010002K18Rik|C79379|Qprs	glutamyl-prolyl-tRNA synthetase	protein-coding	1.5	1.0	1.5	18.0	23.5	33.5
Merged-chr7-98318418-3	chr7	98317929	98318929	+	799.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360615, intron 1 of 10)	intron (NM_001360615, intron 1 of 10)	2779.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73449229-2	chr14	73448729	73449729	+	799.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60820.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37339235-2	chr13	37338733	37339733	+	799.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6112.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	5.5	25.0	13.5	2.5	17.5	18.5
Merged-chr11-118421685-2	chr11	118421185	118422185	+	799.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2567.0	NM_001267592	76025.0	Mm.177551	NM_029502	ENSMUSG00000025575	Cant1	5830420C20Rik|Apy1h|D11Bwg0554e|Entpd8|SCAN-1|Shapy	calcium activated nucleotidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-88901802-1	chr11	88901302	88902302	+	799.0	f1_c57bl6.idr	Intergenic	Intergenic	-4126.0	NR_045955	73921.0	Mm.439148	NR_045955	ENSMUSG00000087338	Scpep1os	4930405P13Rik	serine carboxypeptidase 1, opposite strand	ncRNA	1.5	2.0	0.0	0.0	4.5	0.0
Merged-chr5-101898259-2	chr5	101897759	101898759	+	799.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 34 of 66)	intron (NM_172882, intron 34 of 66)	133129.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.5	1.0	0.5	1.5	0.0	0.0
Merged-chr2-52953380-2	chr2	52952880	52953880	+	799.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	95512.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32507640-2	chr16	32507169	32508169	+	799.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_199309)	TTS (NM_199309)	11388.0	NM_199309	245308.0	Mm.76859	NM_199309	ENSMUSG00000052363	Zdhhc19	Gm1744|Gm616	zinc finger, DHHC domain containing 19	protein-coding	0.0	0.0	2.5	0.0	2.0	2.5
Merged-chr4-46502390-1	chr4	46501890	46502890	+	799.0	f1_balb.idr	intron (NM_053179, intron 5 of 5)	intron (NM_053179, intron 5 of 5)	13061.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	2.0	0.5	1.0	3.0	3.0	3.0
Merged-chr19-40515062-2	chr19	40514530	40515530	+	799.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1218.0	NM_009166	20411.0	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.0	1.5	0.0	1.0	1.5	0.0
Merged-chr9-78476943-2	chr9	78476443	78477443	+	799.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4781.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4114535-2	chr19	4114035	4115035	+	799.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_075078)	TTS (NR_075078)	7040.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43050717-3	chr17	43050196	43051196	+	799.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 3 of 5)	MIR|SINE|MIR	34141.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	1.0	1.5	1.0	1.5	7.0	4.5
Merged-chr14-20112311-2	chr14	20111811	20112811	+	799.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29139.0	NM_026209	67509.0	Mm.292423	NM_026209	ENSMUSG00000045107	Saysd1	1810063B07Rik|4930488P03Rik	SAYSVFN motif domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-33660063-1	chr8	33659563	33660563	+	799.0	f1_c57bl6.idr	intron (NM_010344, intron 1 of 12)	intron (NM_010344, intron 1 of 12)	6825.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	114.0	222.5	189.5	72.0	31.0	56.5
Merged-chr10-117716106-2	chr10	117715606	117716606	+	799.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-5348.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22653869-2	chr16	22653369	22654369	+	799.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346673, intron 1 of 23)	intron (NM_001346673, intron 1 of 23)	3362.0	NM_138650	110197.0	Mm.194986	NM_138650	ENSMUSG00000022861	Dgkg	2900055E17Rik|90kDa|AI854428|Dagk3|E430001K23Rik|mKIAA4131	diacylglycerol kinase, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89354693-2	chr15	89354193	89355193	+	799.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178919, exon 2 of 14)	exon (NM_178919, exon 2 of 14)	966.0	NM_178919	105847.0	Mm.34511	NM_178919	ENSMUSG00000022614	Lmf2	AI451006|Tmem112b|Tmem153	lipase maturation factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18621242-2	chr16	18620742	18621742	+	799.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_213614)	TTS (NM_213614)	1161.0	NM_001001999	14724.0	Mm.475622	NM_010327	ENSMUSG00000050761	Gp1bb	-	glycoprotein Ib, beta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-67244271-2	chr8	67243771	67244771	+	799.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-246487.0	NM_008673	17960.0	Mm.14125	NM_008673	ENSMUSG00000025588	Nat1	Nat-1	N-acetyl transferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94269806-4	chr16	94269243	94270243	+	799.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 2 of 10)	intron (NM_001360045, intron 2 of 10)	20548.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55660926-2	chr19	55660426	55661426	+	799.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	41278.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89336467-1	chr6	89335967	89336967	+	799.0	f0_c57.idr	intron (NM_008881, intron 10 of 31)	intron (NM_008881, intron 10 of 31)	26146.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122946120-2	chr6	122945620	122946620	+	799.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-6395.0	NM_001204241	73149.0	Mm.25684	NM_153197	ENSMUSG00000043832	Clec4a3	3110037K17Rik|Dcir3	C-type lectin domain family 4, member a3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105568783-2	chr5	105568283	105569283	+	799.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	49312.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	1.0	3.0	1.5	1.5	1.5	4.0
Merged-chr11-80149438-2	chr11	80148938	80149938	+	799.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4724.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30076650-1	chr2	30076150	30077150	+	799.0	f1_balb.idr	Intergenic	PB1D10|SINE|Alu	-2048.0	NM_153805	263803.0	Mm.233843	NM_153805	ENSMUSG00000026785	Pkn3	AW209115|BC034126	protein kinase N3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45075591-1	chr19	45075091	45076091	+	799.0	f0_balb.idr	promoter-TSS (NM_001362397)	promoter-TSS (NM_001362397)	350.0	NM_001362398	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60016347-1	chr13	60015847	60016847	+	799.0	f0_balb.idr	Intergenic	Intergenic	-13364.0	NR_046142	328263.0	Mm.123405	NR_046142	ENSMUSG00000114531	A530065N20Rik	A530065N20	RIKEN cDNA A530046M15 gene	ncRNA	0.5	0.0	0.0	0.0	3.0	0.5
Merged-chr9-31834332-2	chr9	31833832	31834832	+	799.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	78953.0	NM_013800	12023.0	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55621911-2	chr16	55621411	55622411	+	799.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	127180.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-32996766-2	chr6	32996266	32997266	+	799.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355667, intron 3 of 8)	intron (NM_001355667, intron 3 of 8)	63494.0	NM_001355667	66075.0	Mm.21501	NM_025336	ENSMUSG00000053768	Chchd3	0610041L09Rik|1700039J09Rik|AW558177	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64042728-2	chr15	64042228	64043228	+	799.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	B1_Mur4|SINE|Alu	17036.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87174832-2	chr3	87174301	87175301	+	799.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130867)	promoter-TSS (NM_130867)	-54.0	NM_130867	170643.0	Mm.89552	NM_130867	ENSMUSG00000041734	Kirrel	6720469N11Rik|Kirrel1|Neph1	kirre like nephrin family adhesion molecule 1	protein-coding	0.0	3.0	1.5	0.0	0.0	0.0
Merged-chr2-73428463-5	chr2	73428043	73429043	+	799.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25346.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59238775-2	chr2	59238275	59239275	+	799.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	ORR1A4|LTR|ERVL-MaLR	77925.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90390890-2	chr3	90390390	90391390	+	799.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011988)	promoter-TSS (NM_011988)	-952.0	NM_011988	26568.0	Mm.45519	NM_011988	ENSMUSG00000027932	Slc27a3	Acsvl3|FATP-3|FATP3|Vlcs-3	solute carrier family 27 (fatty acid transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57395581-2	chr16	57395081	57396081	+	799.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	42304.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21998909-6	chr10	21998420	21999420	+	798.972229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001161850, exon 12 of 12)	3' UTR (NM_001161850, exon 12 of 12)	4254.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25410962-4	chr10	25410454	25411454	+	798.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013511, intron 1 of 19)	intron (NM_013511, intron 1 of 19)	2586.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	21.5	17.0	20.5	11.0	27.5	13.0
Merged-chr14-54406888-3	chr14	54406368	54407368	+	798.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	2604.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	34.5	44.5	48.5	52.5	87.5	78.0
Merged-chr4-124738950-4	chr4	124738464	124739464	+	798.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151694, intron 3 of 3)	intron (NR_151694, intron 3 of 3)	-2886.0	NM_008385	16330.0	Mm.296202	NM_008385	ENSMUSG00000028894	Inpp5b	5PTase|AW260155|INPP5P	inositol polyphosphate-5-phosphatase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71543820-3	chr8	71543294	71544294	+	798.888916	f1_balb.idr|f1_c57bl6.idr	intron (NM_028617, intron 3 of 8)	intron (NM_028617, intron 3 of 8)	864.0	NM_028617	73711.0	Mm.307770	NM_028617	ENSMUSG00000031813	Mvb12a	1110012M11Rik|Fam125a	multivesicular body subunit 12A	protein-coding	4.0	9.0	3.5	7.5	3.0	7.0
Merged-chr2-73037444-3	chr2	73036941	73037941	+	798.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56995.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127126827-4	chr10	127126329	127127329	+	798.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR35B_MM|LTR|ERVL	-5669.0	NM_001171026	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65779630-2	chr17	65779183	65780183	+	798.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3672.0	NR_152099	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	3.0	5.5	4.5	3.0	10.0	5.0
Merged-chr15-85090945-4	chr15	85090452	85091452	+	798.866638	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_080470, exon 17 of 25)	exon (NM_080470, exon 17 of 25)	41005.0	NM_080470	140557.0	Mm.182737	NM_080470	ENSMUSG00000022432	Smc1b	SMC-1B|SMC1beta|Smc1l2	structural maintenance of chromosomes 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96578693-2	chr3	96578193	96579193	+	798.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027241, intron 7 of 7)	intron (NM_027241, intron 7 of 7)	-11892.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	1.0	29.0	17.5	4.5	13.5	12.5
Merged-chr10-21607158-2	chr10	21606650	21607650	+	798.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_027968, intron 2 of 2)	intron (NR_027968, intron 2 of 2)	14005.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	41.5	35.5	28.5	13.0	23.5	22.5
Merged-chr7-25753254-2	chr7	25752754	25753754	+	798.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360789, intron 1 of 14)	intron (NM_001360789, intron 1 of 14)	1505.0	NM_144922	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100124410-2	chr7	100123910	100124910	+	798.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2910.0	NM_133692	67967.0	Mm.37562	NM_133692	ENSMUSG00000030726	Pold3	2410142G14Rik|C85233|P66|P68	polymerase (DNA-directed), delta 3, accessory subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92775500-3	chr1	92774997	92775997	+	798.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56148.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54886416-3	chr6	54885912	54886912	+	798.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199143, intron 4 of 4)	intron (NM_199143, intron 4 of 4)	69496.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118652015-3	chr9	118651526	118652526	+	798.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	45317.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	18.5	23.5	21.0	5.0	36.0	23.5
Merged-chr2-125723742-3	chr2	125723207	125724207	+	798.81665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_199022, exon 1 of 12)	5' UTR (NM_199022, exon 1 of 12)	441.0	NM_199022	271849.0	Mm.425101	NM_199022	ENSMUSG00000035109	Shc4	6230417E10Rik|9930029B02Rik|Gm685|RaLP	SHC (Src homology 2 domain containing) family, member 4	protein-coding	1.0	3.0	1.5	6.5	0.0	4.0
Merged-chr8-70702814-9	chr8	70702433	70703433	+	798.806396	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5194.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	3.0	15.0	2.5	0.0	9.5	2.0
Merged-chr13-104094990-3	chr13	104094485	104095485	+	798.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029447, intron 1 of 12)	ORR1E|LTR|ERVL-MaLR	14629.0	NM_029447	75805.0	Mm.127692	NM_029447	ENSMUSG00000021710	Nln	4930472G13Rik|C79345	neurolysin (metallopeptidase M3 family)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-17247546-4	chr19	17247048	17248048	+	798.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91957.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	28.0	59.0	29.0	32.5	56.5	29.5
Merged-chr2-101827343-3	chr2	101826849	101827849	+	798.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	11631.0	NM_001110849	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	0.0	0.0	3.5	0.5	16.0	1.0
Merged-chr15-89339882-4	chr15	89339388	89340388	+	798.770813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5415.0	NM_019977	56727.0	Mm.158200	NM_019977	ENSMUSG00000022613	Miox	0610009I10Rik|AI314022|Aldrl6|C85427|RSOR	myo-inositol oxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74929068-3	chr15	74928563	74929563	+	798.755554	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25988.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	84.5	290.0	243.5	49.0	95.5	86.5
Merged-chr15-82318018-2	chr15	82317530	82318530	+	798.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25B|LTR|ERVK	19046.0	NM_029066	74716.0	Mm.159315	NM_029066	ENSMUSG00000022455	Wbp2nl	4930521I23Rik|PAWP	WBP2 N-terminal like	protein-coding	2.0	0.0	0.0	0.0	1.0	0.0
Merged-chr4-71252440-4	chr4	71251923	71252923	+	798.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-717495.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80700949-4	chr10	80700464	80701464	+	798.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	856.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-17982124-2	chr14	17981557	17982557	+	798.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_009380, exon 1 of 7)	exon (NM_009380, exon 1 of 7)	413.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.5	1.5	0.0	5.0
Merged-chr6-3397407-2	chr6	3396893	3397893	+	798.75	f0_c57.idr|f1_c57bl6.idr	intron (NM_010156, intron 1 of 1)	intron (NM_010156, intron 1 of 1)	2178.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	0.0	4.5	4.5	4.0	2.0	4.0
Merged-chr8-77535205-3	chr8	77534678	77535678	+	798.744446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14219.0	NM_001081240	102182.0	Mm.197630	NM_178903	ENSMUSG00000037134	Prmt9	AI931714|Prmt10	protein arginine methyltransferase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-89742348-4	chr13	89741810	89742810	+	798.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019389, exon 1 of 14)	5' UTR (NM_019389, exon 1 of 14)	202.0	NM_001081249	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	0.0	0.5	0.0	1.0	0.0	0.5
Merged-chr7-64404152-3	chr7	64403653	64404653	+	798.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028626, intron 2 of 2)	intron (NM_028626, intron 2 of 2)	11531.0	NM_001355124	73724.0	Mm.10093	NM_028626	ENSMUSG00000033429	Mcee	1110007A04Rik	methylmalonyl CoA epimerase	protein-coding	6.0	6.5	3.0	13.0	3.0	12.0
Merged-chr18-4369318-4	chr18	4368830	4369830	+	798.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040328)	TTS (NR_040328)	-6262.0	NM_001361008	67440.0	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-80955530-3	chr5	80955030	80956030	+	798.700012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65041.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.0	0.0	4.5	0.0	3.0	0.5
Merged-chr1-191278517-4	chr1	191277979	191278979	+	798.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39639.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	5.5	7.5	10.5	7.0	16.0	1.5
Merged-chr12-16634214-3	chr12	16633719	16634719	+	798.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19251.0	NM_001361702	18217.0	Mm.281715	NM_008747	ENSMUSG00000020591	Ntsr2	NT-R-2|NT2R|NTR2|NTRL	neurotensin receptor 2	protein-coding	0.0	1.0	1.0	0.5	1.0	9.5
Merged-chr5-115550783-3	chr5	115550312	115551312	+	798.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 6 of 10)	intron (NM_011223, intron 6 of 10)	-8655.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	3.5	2.0	2.0	0.0	1.0	0.0
Merged-chr17-43073113-3	chr17	43072581	43073581	+	798.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 4 of 5)	intron (NM_178589, intron 4 of 5)	56526.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	0.0	5.0	4.0	9.5	8.5	4.5
Merged-chr1-82987945-3	chr1	82987459	82988459	+	798.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50489.0	NM_030556	80721.0	Mm.261542	NM_030556	ENSMUSG00000038496	Slc19a3	A230084E24Rik|AI788884|ThTr2	solute carrier family 19, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128203303-4	chr2	128202794	128203794	+	798.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75719.0	NM_001284410	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0.0	0.0	4.0	0.0	0.0	0.0
Merged-chr4-124672999-2	chr4	124672499	124673499	+	798.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15353.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132098309-2	chr1	132097809	132098809	+	798.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-30247.0	NM_001114662	213006.0	Mm.208445	NM_172510	ENSMUSG00000059149	Mfsd4a	A230072B04|A930031D07Rik|AI850289|Mfsd4	major facilitator superfamily domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-34453197-3	chr15	34452705	34453705	+	798.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173421)	promoter-TSS (NM_173421)	-107.0	NM_173421	239368.0	Mm.211977	NM_173421	ENSMUSG00000044726	Erich5	-	glutamate rich 5	protein-coding	0.0	3.5	1.5	0.0	2.5	3.0
Merged-chr15-25675227-3	chr15	25674722	25675722	+	798.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 2 of 40)	MTE2b|LTR|ERVL-MaLR	52672.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-74016965-3	chr5	74016467	74017467	+	798.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177561, intron 4 of 8)	intron (NM_177561, intron 4 of 8)	51444.0	NM_177561	69727.0	Mm.48795	NM_177561	ENSMUSG00000054814	Usp46	1190009E20Rik|2410018I08Rik|AI451644	ubiquitin specific peptidase 46	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119339145-2	chr9	119338666	119339666	+	798.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010851, intron 1 of 5)	intron (NM_010851, intron 1 of 5)	874.0	NM_010851	17874.0	Mm.213003	NM_010851	ENSMUSG00000032508	Myd88	-	myeloid differentiation primary response gene 88	protein-coding	5.0	15.0	7.0	4.0	29.0	10.5
Merged-chr11-69557156-2	chr11	69556656	69557656	+	798.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007911, intron 2 of 4)	intron (NM_007911, intron 2 of 4)	3081.0	NM_007911	13643.0	Mm.249637	NM_007911	ENSMUSG00000003934	Efnb3	EFL-6|ELF-3|Elk-L3|Epl8|LERK-8|NLERK-2	ephrin B3	protein-coding	0.0	5.5	0.0	0.0	5.0	0.0
Merged-chr15-74933639-6	chr15	74933136	74934136	+	798.638916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21415.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	61.0	67.0	42.0	7.0	10.5	11.5
Merged-chr7-16229210-3	chr7	16228716	16229716	+	798.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7184.0	NM_027883	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	45.0	57.0	51.5	26.0	44.0	71.0
Merged-chr2-167629833-5	chr2	167629395	167630395	+	798.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311131, intron 1 of 4)	intron (NM_001311131, intron 1 of 4)	2110.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6403164-2	chr19	6402664	6403664	+	798.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011242, intron 4 of 16)	intron (NM_011242, intron 4 of 16)	2581.0	NM_011242	19395.0	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97155793-3	chr6	97155336	97156336	+	798.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081111, intron 16 of 16)	B1_Mus1|SINE|Alu	-6953.0	NM_175313	101351.0	Mm.116802	NM_175313	ENSMUSG00000035245	Eogt	A130022J15Rik|AI447490|AW214473|AW259391|Aer61	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-57953979-3	chr4	57953468	57954468	+	798.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011660, intron 1 of 4)	intron (NM_011660, intron 1 of 4)	2443.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-94361382-3	chr9	94360901	94361901	+	798.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	176680.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	0.5	12.5	4.0	7.5	6.0	6.0
Merged-chr15-12012649-3	chr15	12012153	12013153	+	798.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-16646.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151661137-4	chr1	151660625	151661625	+	798.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 5 of 13)	intron (NM_022018, intron 5 of 13)	89752.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116138862-5	chr9	116138278	116139278	+	798.546692	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	36585.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	25.0	38.5	23.0	16.0	23.0	12.5
Merged-chr8-124290990-1	chr8	124290490	124291490	+	798.5	f0_balb.idr	intron (NM_139272, intron 1 of 15)	intron (NM_139272, intron 1 of 15)	59596.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	13.0	17.5	2.0	6.0	10.0	8.5
Merged-chr1-171260624-2	chr1	171260136	171261136	+	798.5	f0_c57.idr|f1_c57bl6.idr	3' UTR (NM_172845, exon 9 of 9)	3' UTR (NM_172845, exon 9 of 9)	-9692.0	NM_020579	57370.0	Mm.274011	NM_020579	ENSMUSG00000052423	B4galt3	9530061M23Rik|AA104562|AW125175|ESTM26|ESTM6|R74981	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	protein-coding	1.5	8.5	0.0	0.0	0.0	0.0
Merged-chr6-47648049-2	chr6	47647549	47648549	+	798.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7045.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-44985677-2	chr2	44985177	44986177	+	798.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001355289, exon 11 of 11)	3' UTR (NM_001355289, exon 11 of 11)	37500.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36706281-2	chr15	36705781	36706781	+	798.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84651.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119203588-2	chr11	119203088	119204088	+	798.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347625, intron 3 of 11)	intron (NM_001347625, intron 3 of 11)	24911.0	NM_001347625	207592.0	Mm.205263	NM_172443	ENSMUSG00000039976	Tbc1d16	B930087K01|BC026530|Tcd1d16	TBC1 domain family, member 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-39113864-2	chr15	39113364	39114364	+	798.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198606, intron 1 of 10)	ORR1A2|LTR|ERVL-MaLR	990.0	NM_198606	223499.0	Mm.321937	NM_198606	ENSMUSG00000022300	Dcaf13	Gm83|Wdsof1	DDB1 and CUL4 associated factor 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103031208-2	chr11	103030708	103031708	+	798.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008707, intron 1 of 11)	B1_Mur4|SINE|Alu	2665.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-8164946-4	chr5	8164445	8165445	+	798.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 5 of 28)	intron (NM_001007220, intron 5 of 28)	108403.0	NM_001080974	109552.0	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51936332-3	chr11	51935831	51936831	+	798.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31300.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59142006-4	chr11	59141500	59142500	+	798.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5625.0	NM_199152	380698.0	Mm.339542	NM_199152	ENSMUSG00000061462	Obscn	BC046431|Gm878|UNC89	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	protein-coding	4.5	11.0	23.0	3.5	1.0	0.0
Merged-chr12-112609704-2	chr12	112609204	112610204	+	798.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_198411, exon 17 of 23)	exon (NM_198411, exon 17 of 23)	-10343.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-36050251-2	chr2	36049751	36050751	+	798.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026703)	promoter-TSS (NM_026703)	778.0	NM_029309	75495.0	Mm.276332	NM_029309	ENSMUSG00000026894	Morn5	1700010A17Rik	MORN repeat containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-54924357-2	chr15	54923857	54924857	+	798.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-4211.0	NM_001285994	18606.0	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191279551-2	chr1	191279053	191280053	+	798.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38565.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0.0	0.0	4.5	3.0	5.5	2.5
Merged-chr17-71668850-2	chr17	71668350	71669350	+	798.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-4411.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116594095-2	chr11	116593595	116594595	+	798.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033223, intron 1 of 4)	B4|SINE|B4	408.0	NM_009591	11298.0	Mm.42233	NM_009591	ENSMUSG00000020804	Aanat	AA-NAT|Nat-2|Nat4|Snat	arylalkylamine N-acetyltransferase	protein-coding	0.0	0.0	1.5	0.0	0.0	1.5
Merged-chr19-29255713-2	chr19	29255213	29256213	+	798.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008413, intron 2 of 24)	intron (NM_008413, intron 2 of 24)	3910.0	NM_008413	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119093168-2	chr9	119092668	119093668	+	798.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019676, intron 1 of 14)	intron (NM_019676, intron 1 of 14)	334.0	NR_121571	18799.0	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding	0.0	2.0	2.0	0.0	4.5	0.0
Merged-chr1-58873156-4	chr1	58872661	58873661	+	798.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_1B-I_MM-int|LTR|ERVK	70659.0	NM_001277926	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12976131-2	chr18	12975631	12976631	+	798.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357396, intron 3 of 10)	B2_Mm2|SINE|B2	1671.0	NM_001357396	16210.0	Mm.8154	NM_008378	ENSMUSG00000024423	Impact	E430016J11Rik	impact, RWD domain protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132314051-2	chr1	132313551	132314551	+	798.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2074.0	NM_001195025	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111120623-2	chr9	111120123	111121123	+	798.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027742, intron 2 of 13)	intron (NM_027742, intron 2 of 13)	2512.0	NM_001164838	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20780087-2	chr18	20779587	20780587	+	798.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33683.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117833948-2	chr11	117833448	117834448	+	798.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027827, intron 4 of 10)	ID_B1|SINE|B4	-7934.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88269481-2	chr1	88268981	88269981	+	798.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040291)	promoter-TSS (NR_040291)	-73.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-54430091-2	chr17	54429591	54430591	+	798.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60017.0	NR_045825	69418.0	Mm.391004	NR_045825	ENSMUSG00000099747	1700025K24Rik	-	RIKEN cDNA 1700025K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112522058-2	chr12	112521558	112522558	+	798.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10898.0	NM_178915	104885.0	Mm.37751	NM_178915	ENSMUSG00000054013	Tmem179	AI839735	transmembrane protein 179	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93884951-2	chr16	93884451	93885451	+	798.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028083, intron 2 of 13)	intron (NM_028083, intron 2 of 13)	1050.0	NM_028083	110749.0	Mm.274222	NM_028083	ENSMUSG00000022945	Chaf1b	2600017H24Rik|C76145|CAF-I p60|CAF-Ip60|CAF1|CAF1A|CAF1P60|MPHOSPH7	chromatin assembly factor 1, subunit B (p60)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88859979-2	chr15	88859479	88860479	+	798.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2215.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124628496-3	chr5	124627994	124628994	+	798.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011596)	promoter-TSS (NM_011596)	-558.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102495682-4	chr4	102495161	102496161	+	798.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177983, intron 2 of 5)	intron (NM_001177983, intron 2 of 5)	-74399.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4213524-6	chr8	4212917	4213917	+	798.472229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_207203, exon 6 of 7)	exon (NM_207203, exon 6 of 7)	3895.0	NM_207203	73072.0	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	0.0	1.5	1.5	2.0	1.0	2.0
Merged-chr19-41992682-3	chr19	41992134	41993134	+	798.455566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	B3|SINE|B2	10871.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	9.5	2.0	5.5	6.0	1.5	5.0
Merged-chr11-70396458-3	chr11	70395956	70396956	+	798.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029231, intron 12 of 16)	intron (NM_029231, intron 12 of 16)	13575.0	NM_029231	75273.0	Mm.340601	NM_029231	ENSMUSG00000018921	Pelp1	4930563C04Rik|MNAR	proline, glutamic acid and leucine rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-28807218-3	chr6	28806717	28807717	+	798.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 16 of 23)	intron (NM_019776, intron 16 of 23)	24530.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122853798-4	chr6	122853352	122854352	+	798.4381099999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009779, intron 1 of 1)	intron (NM_009779, intron 1 of 1)	2305.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76670215-3	chr15	76669712	76670712	+	798.422241	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007989)	promoter-TSS (NM_007989)	-264.0	NM_007989	14106.0	Mm.42011	NM_007989	ENSMUSG00000033837	Foxh1	Fast1|Fast2|fast-1|fast-2	forkhead box H1	protein-coding	2.5	0.0	0.5	0.0	0.0	1.5
Merged-chr12-3423892-4	chr12	3423390	3424390	+	798.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030694, intron 1 of 2)	RMER17C2|LTR|ERVK	2857.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-153902995-4	chr3	153902502	153903502	+	798.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031870, intron 1 of 19)	RMER16_Mm|LTR|ERVK	1889.0	NM_001282054	55993.0	Mm.272226	NM_031870	ENSMUSG00000005493	Msh4	4930485C04Rik|AV144863|mMsh4	mutS homolog 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87006633-3	chr1	87006130	87007130	+	798.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172157, intron 14 of 21)	intron (NM_001172157, intron 14 of 21)	83298.0	NM_007433	11650.0	Mm.195224	NM_007433	ENSMUSG00000026246	Alppl2	Akp5|C77216|D1Ertd816e|EAP	alkaline phosphatase, placental-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34279409-4	chr10	34278890	34279890	+	798.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2800.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-7928032-4	chr17	7927536	7928536	+	798.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145968, intron 4 of 9)	intron (NM_145968, intron 4 of 9)	2036.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100635902-4	chr5	100635420	100636420	+	798.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38336.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-87027819-3	chr9	87027345	87028345	+	798.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359962, intron 2 of 14)	intron (NM_001359962, intron 2 of 14)	5816.0	NM_001359962	266690.0	Mm.30166	NM_024195	ENSMUSG00000032872	Cyb5r4	2810034J18Rik|B5+B5R|C79736|Cb5cb5r|Ncb5or|b5/b5r|b5b5r	cytochrome b5 reductase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr5-107980135-1	chr5	107979635	107980635	+	798.400024	f0_balb.idr	intron (NM_026062, intron 1 of 4)	L1MB2|LINE|L1	6942.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	8.0	12.5	4.0	5.0	49.5	8.5
Merged-chr5-91308101-3	chr5	91307595	91308595	+	798.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25019.0	NR_040428	100503265.0	Mm.125059	NR_040428	ENSMUSG00000107198	Gm19619	-	predicted gene, 19619	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118592821-4	chr10	118592325	118593325	+	798.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36300.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-35727179-2	chr5	35726679	35727679	+	798.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359895, intron 1 of 17)	intron (NM_001359895, intron 1 of 17)	2097.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148449150-4	chr4	148448624	148449624	+	798.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020009, intron 1 of 57)	intron (NM_020009, intron 1 of 57)	542.0	NM_020009	56717.0	Mm.21158	NM_020009	ENSMUSG00000028991	Mtor	2610315D21Rik|AI327068|FRAP|FRAP2|Frap1|RAFT1|RAPT1|flat	mechanistic target of rapamycin kinase	protein-coding	81.0	148.0	114.5	40.5	91.0	93.0
Merged-chr11-83580987-4	chr11	83580491	83581491	+	798.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1070.0	NR_036453	100504464.0	Mm.341706	NR_036452	ENSMUSG00000051832	E230016K23Rik	-	RIKEN cDNA E230016K23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113774642-2	chr5	113774142	113775142	+	798.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025526, intron 2 of 4)	intron (NM_025526, intron 2 of 4)	1830.0	NM_025526	66383.0	Mm.29497	NM_025526	ENSMUSG00000025825	Iscu	2310020H20Rik|AA407971|Nifu|Nifun	iron-sulfur cluster assembly enzyme	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-48433280-2	chr9	48432780	48433780	+	798.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21064.0	NR_026561	667933.0	Mm.491076	NR_026561		Gm8884	EG667933	predicted gene 8884	ncRNA	9.0	6.5	4.5	1.0	5.0	2.0
Merged-chr7-28354054-2	chr7	28353554	28354554	+	798.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2514.0	NR_028129	100302567.0		NR_028129		AF357399	MBI-142	snoRNA AF357399	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79756556-3	chr15	79756055	79757055	+	798.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045069, exon 4 of 4)	non-coding (NR_045069, exon 4 of 4)	13857.0	NR_045069	100504191.0	Mm.421420	NR_045069	ENSMUSG00000087543	Gm16576	-	predicted gene 16576	ncRNA	3.0	15.5	8.5	3.0	15.5	11.5
Merged-chr12-99975231-3	chr12	99974737	99975737	+	798.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	L1M4|LINE|L1	10738.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-48814872-3	chr2	48814365	48815365	+	798.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007396, intron 1 of 10)	CpG	756.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66359094-3	chr9	66358610	66359610	+	798.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145617, intron 1 of 77)	intron (NM_145617, intron 1 of 77)	8660.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155219968-3	chr4	155219454	155220454	+	798.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	2581.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	11.0	12.5	6.0	3.5	16.5	11.5
Merged-chr19-5910370-2	chr19	5909870	5910870	+	798.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011262, intron 1 of 10)	intron (NM_011262, intron 1 of 10)	2501.0	NM_011262	19708.0	Mm.2651	NM_011262	ENSMUSG00000024826	Dpf2	2210010M07Rik|BAF45D|Req|ubi-d4	D4, zinc and double PHD fingers family 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135271286-2	chr4	135270786	135271786	+	798.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	1474.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-101030772-1	chr3	101030272	101031272	+	798.25	f0_balb.idr	Intergenic	Intergenic	-1277.0	NM_001167906	630146.0	Mm.190915	NM_001099332	ENSMUSG00000086564	Cd101	EWI-101|Gm1016|Gm734|Igsf2	CD101 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-26404061-3	chr6	26403573	26404573	+	798.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVL-int|LTR|ERVL	472647.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80280586-4	chr18	80280099	80281099	+	798.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025861, intron 4 of 5)	intron (NM_025861, intron 4 of 5)	24293.0	NM_025861	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-20233729-2	chr12	20233229	20234229	+	798.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	582050.0	NR_015521	69513.0	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104272336-4	chr9	104271831	104272831	+	798.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9401.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-74928980-4	chr14	74928480	74929480	+	798.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	18897.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132588675-4	chr4	132588183	132589183	+	798.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24616.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	2.5	2.5	1.5	0.0	1.5	9.0
Merged-chr13-21168889-3	chr13	21168393	21169393	+	798.196289	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11038.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	5.0	20.0	2.0	6.5	4.0	9.5
Merged-chr11-95687324-2	chr11	95686824	95687824	+	798.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20367.0	NM_008831	18673.0	Mm.263862	NM_008831	ENSMUSG00000038845	Phb	Bap32	prohibitin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21383080-3	chr10	21382572	21383572	+	798.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178713, intron 3 of 6)	intron (NM_178713, intron 3 of 6)	5772.0	NM_178713	237320.0	Mm.90181	NM_178713	ENSMUSG00000037542	Aldh8a1	Raldh4	aldehyde dehydrogenase 8 family, member A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75910163-3	chr7	75909674	75910674	+	798.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61836.0	NM_029652	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42876348-3	chr10	42875847	42876847	+	798.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359265, intron 1 of 6)	intron (NM_001359265, intron 1 of 6)	15835.0	NM_001359264	268297.0	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	Scm polycomb group protein like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70871493-3	chr8	70871027	70872027	+	798.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_026964, intron 1 of 4)	intron (NM_026964, intron 1 of 4)	1963.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	0.0	1.0	0.0	6.0	9.0	0.0
Merged-chr3-95427530-2	chr3	95427030	95428030	+	798.166687	f1_balb.idr|f1_c57bl6.idr	intron (NR_033637, intron 1 of 2)	RLTR41|LTR|ERV1	181.0	NR_033637	100043305.0	Mm.412052	NR_033637		Gm4349	-	SET domain, bifurcated 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-144769850-2	chr5	144769350	144770350	+	798.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081362, intron 1 of 70)	RSINE1|SINE|B4	1058.0	NM_001081362	100683.0	Mm.273570	NM_001081362	ENSMUSG00000045482	Trrap	AI481500	transformation/transcription domain-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91719625-2	chr6	91719125	91720125	+	798.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	35558.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81712021-2	chr13	81711521	81712521	+	798.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028372, intron 1 of 1)	intron (NM_028372, intron 1 of 1)	604.0	NM_028372	72852.0	Mm.31095	NM_028372	ENSMUSG00000051098	Mblac2	2900024O10Rik	metallo-beta-lactamase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-33322822-2	chr14	33322322	33323322	+	798.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 4 of 10)	intron (NM_153800, intron 4 of 10)	88202.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81439521-4	chr13	81439029	81440029	+	798.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_054053, exon 67 of 90)	exon (NM_054053, exon 67 of 90)	193615.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98838057-4	chr7	98837560	98838560	+	798.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285795)	promoter-TSS (NM_001285795)	-785.0	NM_009519	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80776040-4	chr17	80775532	80776532	+	798.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48007.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97281901-3	chr6	97281383	97282383	+	798.095215	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29103.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	16.0	50.5	19.5	15.0	23.5	11.5
Merged-chr9-44134708-4	chr9	44134195	44135195	+	798.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023061)	promoter-TSS (NM_023061)	37.0	NM_001359530	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94504401-4	chr16	94503927	94504927	+	798.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 4 of 7)	intron (NM_007834, intron 4 of 7)	22202.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75880906-4	chr7	75880423	75881423	+	798.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32585.0	NM_029652	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52892094-4	chr2	52891699	52892699	+	798.071411	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	34331.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45748625-3	chr17	45748122	45749122	+	798.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 1 of 4)	intron (NR_152153, intron 1 of 4)	14116.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	1.5	0.0	0.0	0.0	0.5	1.0
Merged-chr1-134075800-4	chr1	134075306	134076306	+	798.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007570, exon 2 of 2)	3' UTR (NM_007570, exon 2 of 2)	3349.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13295274-4	chr10	13294769	13295769	+	798.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	29020.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95883063-4	chr13	95882580	95883580	+	798.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	8842.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	8.0	40.0	31.0	26.0	54.0	49.0
Merged-chr9-61900049-2	chr9	61899549	61900549	+	798.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14461.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26701210-1	chr8	26700710	26701710	+	798.0	f1_balb.idr	Intergenic	Intergenic	123213.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	43.5	65.5	51.0	14.5	25.0	11.5
Merged-chr2-166027419-2	chr2	166026919	166027919	+	798.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	34782.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27327913-1	chr14	27327413	27328413	+	798.0	f1_c57bl6.idr	intron (NM_027871, intron 2 of 10)	intron (NM_027871, intron 2 of 10)	-8124.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr3-84622209-2	chr3	84621709	84622709	+	798.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28635.0	NM_207278	403175.0	Mm.83086	NM_207278	ENSMUSG00000047819	Tigd4	C130063O11Rik|Gm418	tigger transposable element derived 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122071680-2	chr10	122071180	122072180	+	798.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR48A|LTR|ERV1	8199.0	NR_004052	668272.0	Mm.236764	NR_004052		Gm9079	-	transmembrane emp24 domain trafficking protein 2 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-107516089-4	chr1	107515583	107516583	+	798.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011111, intron 2 of 7)	intron (NM_011111, intron 2 of 7)	4573.0	NM_011111	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46457268-3	chr18	46456800	46457800	+	798.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8516.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86210371-2	chr15	86209871	86210871	+	798.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4088.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-57407684-3	chr2	57407139	57408139	+	798.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	169257.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101963735-2	chr5	101963235	101964235	+	798.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 5 of 66)	intron (NM_172882, intron 5 of 66)	106186.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	7.0	10.5	22.5	5.5	32.0	5.5
Merged-chr18-49833714-2	chr18	49833214	49834214	+	798.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081371, intron 1 of 42)	intron (NM_001081371, intron 1 of 42)	717.0	NM_001081371	240283.0	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-13290824-2	chr2	13290324	13291324	+	798.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081084, intron 60 of 66)	intron (NM_001081084, intron 60 of 66)	-19409.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33835724-2	chr16	33835224	33836224	+	798.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 1 of 14)	intron (NM_001145884, intron 1 of 14)	6059.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3084428-2	chr4	3083928	3084928	+	798.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87655.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38386742-2	chr15	38386242	38387242	+	798.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER102a|DNA|hAT-Charlie	-86031.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44287478-2	chr9	44286978	44287978	+	798.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138955, intron 1 of 14)	intron (NM_138955, intron 1 of 14)	766.0	NM_138955	192663.0	Mm.101876	NM_138955	ENSMUSG00000032131	Abcg4	6430517O04Rik	ATP binding cassette subfamily G member 4	protein-coding	0.0	0.5	0.0	0.0	0.5	0.0
Merged-chr7-19843272-2	chr7	19842772	19843772	+	798.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8731.0	NM_001270489	100502736.0	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34291187-1	chr17	34290687	34291687	+	798.0	f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-3416.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	62.5	204.0	51.5	52.5	109.5	42.0
Merged-chr5-64386046-2	chr5	64385546	64386546	+	798.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	81896.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr5-110330615-3	chr5	110330055	110331055	+	798.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011132, intron 41 of 48)	intron (NM_011132, intron 41 of 48)	12480.0	NM_153400	231602.0	Mm.55948	NM_153400	ENSMUSG00000029503	P2rx2	P2X2a|P2x2	purinergic receptor P2X, ligand-gated ion channel, 2	protein-coding	0.0	2.0	0.0	5.0	0.0	0.0
Merged-chr13-76017560-1	chr13	76017060	76018060	+	798.0	f1_c57bl6.idr	5' UTR (NM_178916, exon 1 of 4)	5' UTR (NM_178916, exon 1 of 4)	1002.0	NM_178916	218341.0	Mm.266515	NM_178916	ENSMUSG00000043190	Rfesd	AI256775|D030068K09	Rieske (Fe-S) domain containing	protein-coding	29.5	40.5	32.5	12.0	19.5	15.5
Merged-chr17-49933857-1	chr17	49933357	49934357	+	798.0	f1_balb.idr	Intergenic	Intergenic	256640.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	1.0	0.0	1.5	2.0	2.0	0.0
Merged-chr6-114849142-2	chr6	114848642	114849642	+	798.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	72679.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-52690170-1	chr18	52689670	52690670	+	798.0	f0_balb.idr	Intergenic	Intergenic	-3509.0	NM_010293	14625.0	Mm.32242	NM_010293	ENSMUSG00000053624	Gykl1	AI449806|Gk-rs1	glycerol kinase-like 1	protein-coding	3.5	1.5	0.0	3.5	0.0	1.0
Merged-chr13-63303023-1	chr13	63302523	63303523	+	798.0	f1_balb.idr	TTS (NR_110520)	TTS (NR_110520)	-1740.0	NR_037235	100526474.0		NR_037235	ENSMUSG00000092741	Mir3074-1	mmu-mir-3074-1	microRNA 3074-1	ncRNA	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr9-95510585-2	chr9	95510085	95511085	+	798.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357977, intron 1 of 25)	intron (NM_001357977, intron 1 of 25)	1411.0	NM_001357975	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	3.0	2.0	5.0	0.0	2.0	2.5
Merged-chr5-113828528-2	chr5	113828037	113829037	+	798.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009151, intron 1 of 1)	intron (NM_009151, intron 1 of 1)	1964.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0.5	2.5	1.0	2.0	2.0	1.0
Merged-chr5-106767425-1	chr5	106766925	106767925	+	798.0	f1_c57bl6.idr	Intergenic	Intergenic	-70595.0	NM_026856	52397.0	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	1.0	6.5	3.0	0.0	2.5	0.0
Merged-chr4-32005504-1	chr4	32005004	32006004	+	798.0	f1_balb.idr	intron (NM_009316, intron 13 of 16)	intron (NM_009316, intron 13 of 16)	41397.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	23.0	3.0	0.5	11.5	5.5	9.0
Merged-chr17-78202375-2	chr17	78201875	78202875	+	798.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 1 of 16)	intron (NM_015800, intron 1 of 16)	2127.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85944349-2	chr12	85943849	85944849	+	798.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 28 of 32)	intron (NM_001347395, intron 28 of 32)	119399.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-186204377-3	chr1	186203875	186204875	+	798.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87065.0	NM_146106	226791.0	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3378382-1	chr19	3377882	3378882	+	798.0	f0_c57.idr	exon (NM_013495, exon 15 of 19)	exon (NM_013495, exon 15 of 19)	-10475.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-144988522-1	chr4	144988022	144989022	+	798.0	f0_balb.idr	intron (NM_001276465, intron 67 of 69)	intron (NM_001276465, intron 67 of 69)	95385.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161556886-1	chr1	161556386	161557386	+	798.0	f0_balb.idr	Intergenic	Intergenic	62229.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	0.0	0.0	3.0	0.0	0.0	0.0
Merged-chr16-81202178-4	chr16	81201677	81202677	+	798.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113208, intron 1 of 17)	intron (NM_001113208, intron 1 of 17)	1480.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31567140-2	chr17	31566640	31567640	+	798.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016670, intron 1 of 10)	intron (NM_016670, intron 1 of 10)	2367.0	NM_016670	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71011060-2	chr17	71010578	71011578	+	798.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A1|LTR|ERVL-MaLR	-8479.0	NM_010867	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	12.5	1.5	4.5	0.0	0.0	5.0
Merged-chr2-128392080-1	chr2	128391580	128392580	+	798.0	f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	L1MB3|LINE|L1	37271.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	85.0	156.5	101.5	50.0	130.0	76.5
Merged-chr6-88193724-2	chr6	88193224	88194224	+	798.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355253)	promoter-TSS (NM_001355253)	-167.0	NM_001355253	14461.0	Mm.491156	NM_008090	ENSMUSG00000015053	Gata2	Gata-2	GATA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-78277728-3	chr16	78277211	78278211	+	798.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BC1_Mm|scRNA|scRNA	-22257.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45655190-2	chr14	45654690	45655690	+	798.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176845, intron 1 of 12)	intron (NM_176845, intron 1 of 12)	2863.0	NR_039593	100628600.0		NR_039593	ENSMUSG00000093167	Mir5131	mmu-mir-5131|mu-mir-5131	microRNA 5131	ncRNA	15.5	39.0	37.0	10.0	8.5	20.5
Merged-chr8-47370900-1	chr8	47370400	47371400	+	798.0	f0_balb.idr	Intergenic	Intergenic	-18552.0	NM_175162	71069.0	Mm.23973	NM_175162	ENSMUSG00000038143	Stox2	4933409N07Rik|AI449080|AI835114|mKIAA1392	storkhead box 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118119807-1	chr10	118119307	118120307	+	798.0	f0_balb.idr	Intergenic	Intergenic	-21980.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-189933779-2	chr1	189933340	189934340	+	798.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11549.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50571230-4	chr17	50570732	50571732	+	798.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	MTD|LTR|ERVL-MaLR	61685.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44141423-2	chr9	44140923	44141923	+	798.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023061, intron 15 of 15)	intron (NM_023061, intron 15 of 15)	6765.0	NM_001359530	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100525132-4	chr11	100524609	100525609	+	798.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134037, intron 1 of 27)	intron (NM_134037, intron 1 of 27)	2891.0	NM_134037	104112.0	Mm.282039	NM_134037	ENSMUSG00000020917	Acly	A730098H14Rik|AW538652	ATP citrate lyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80219859-2	chr15	80219359	80220359	+	798.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14221.0	NM_001357659	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	40.0	98.0	90.5	27.0	96.5	77.0
Merged-chr19-55742648-4	chr19	55742145	55743145	+	798.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 1 of 15)	CpG	835.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	17.0	43.5	34.5	18.0	42.5	30.0
Merged-chr12-102457386-2	chr12	102456881	102457881	+	798.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11753.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	54.5	101.0	103.0	51.5	61.5	30.5
Merged-chr7-88242759-4	chr7	88242266	88243266	+	797.987488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35319.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26981220-4	chr8	26980749	26981749	+	797.958313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001101502, exon 2 of 2)	3' UTR (NM_001101502, exon 2 of 2)	3913.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24077494-4	chr5	24077005	24078005	+	797.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23085.0	NM_026448	52323.0	Mm.273768	NM_026448	ENSMUSG00000028986	Klhl7	2700038B03Rik|D5Ertd363e|SBBI26	kelch-like 7	protein-coding	2.0	5.5	1.0	1.5	2.0	0.5
Merged-chr5-121923659-3	chr5	121923159	121924159	+	797.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007804, intron 3 of 22)	PB1D10|SINE|Alu	74662.0	NM_001359949	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	1.5	2.5	0.0	0.0	2.5	1.0
Merged-chr18-9444976-4	chr18	9444466	9445466	+	797.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026484, intron 1 of 9)	MTC|LTR|ERVL-MaLR	5188.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65687158-5	chr18	65686557	65687557	+	797.899048	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_207255, exon 6 of 6)	exon (NM_207255, exon 6 of 6)	-11211.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	19.0	10.0	15.5	20.0	85.0	52.5
Merged-chr13-30986141-7	chr13	30985597	30986597	+	797.892883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12050.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45388382-4	chr13	45387933	45388933	+	797.892822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1309.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	4.0	14.0	2.0	2.0	13.5	2.0
Merged-chr5-8660245-8	chr5	8659729	8660729	+	797.842285	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011076, intron 3 of 29)	intron (NM_011076, intron 3 of 29)	-37277.0	NM_198620	242819.0	Mm.332192	NM_198620	ENSMUSG00000040570	Rundc3b	Gm440	RUN domain containing 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-16599938-4	chr16	16599385	16600385	+	797.841675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301817)	promoter-TSS (NM_001301817)	93.0	NM_001301817	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-20008282-5	chr4	20007797	20008797	+	797.840027	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317723)	promoter-TSS (NM_001317723)	-32.0	NM_015767	50500.0	Mm.24375	NM_015767	ENSMUSG00000073988	Ttpa	alpha-TTP	tocopherol (alpha) transfer protein	protein-coding	1.5	6.0	3.5	0.0	2.5	1.0
Merged-chr4-33384044-2	chr4	33383544	33384544	+	797.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305273, intron 12 of 15)	intron (NM_001305273, intron 12 of 15)	-54037.0	NR_106198	102465904.0		NR_106198	ENSMUSG00000098310	Mir8118	Gm27954|mmu-mir-8118	microRNA 8118	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167789835-2	chr2	167789335	167790335	+	797.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98658.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77550149-2	chr10	77549649	77550649	+	797.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 7 of 15)	intron (NM_008404, intron 7 of 15)	19801.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73513283-3	chr13	73512788	73513788	+	797.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145376, intron 12 of 13)	intron (NM_145376, intron 12 of 13)	-23459.0	NM_010020	13162.0	Mm.41993	NM_010020	ENSMUSG00000021609	Slc6a3	DAT|Dat1	solute carrier family 6 (neurotransmitter transporter, dopamine), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101128813-2	chr15	101128378	101129378	+	797.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277255, intron 1 of 11)	intron (NM_001277255, intron 1 of 11)	356.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	28.0	9.5	18.5	12.5	13.0	41.5
Merged-chr11-117306859-4	chr11	117306343	117307343	+	797.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-24872.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126236180-3	chr7	126235739	126236739	+	797.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131046, intron 2 of 4)	intron (NR_131046, intron 2 of 4)	1365.0	NR_131047	76728.0	Mm.76920	NR_131046	ENSMUSG00000108676	1700123J17Rik	Gm44875	RIKEN cDNA 1700123J17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134551828-3	chr4	134551349	134552349	+	797.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029100, intron 1 of 11)	intron (NM_029100, intron 1 of 11)	317.0	NM_029100	74777.0	Mm.29773	NM_029100	ENSMUSG00000050989	Selenon	1110019I12Rik|AI414492|SelN|Sepn1	selenoprotein N	protein-coding	8.5	5.0	10.5	11.0	29.5	16.5
Merged-chr13-100402041-3	chr13	100401536	100402536	+	797.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	50828.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	11.5	25.5	4.5	5.0	1.0	3.0
Merged-chr13-94286336-3	chr13	94285880	94286880	+	797.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346609)	promoter-TSS (NM_001346609)	-549.0	NM_001346609	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-67632633-2	chr8	67632133	67633133	+	797.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108779.0	NM_008674	17962.0	Mm.57193	NM_008674	ENSMUSG00000056426	Nat3	-	N-acetyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-67048747-2	chr9	67048247	67049247	+	797.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164249, intron 1 of 8)	CpG-15124	466.0	NM_001164255	22003.0	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|TPM1kappa|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135959990-2	chr4	135959490	135960490	+	797.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_008254, exon 7 of 9)	exon (NM_008254, exon 7 of 9)	-3735.0	NM_001356493	74246.0	Mm.247946	NM_178389	ENSMUSG00000028671	Gale	2310002A12Rik|AI323962	galactose-4-epimerase, UDP	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180987973-4	chr1	180987481	180988481	+	797.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29588.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120300973-4	chr8	120300462	120301462	+	797.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72732.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70787886-2	chr11	70787386	70788386	+	797.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23439.0	NM_177565	193043.0	Mm.40966	NM_177565	ENSMUSG00000043602	Zfp3	AI854635|B230309J24|Fnp-1|Zfp-3	zinc finger protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52599576-2	chr13	52599076	52600076	+	797.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 1 of 13)	intron (NM_011518, intron 1 of 13)	2694.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81017341-2	chr15	81016841	81017841	+	797.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 10 of 13)	intron (NM_001082536, intron 10 of 13)	39576.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70797243-3	chr14	70796776	70797776	+	797.738892	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22895.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	15.5	15.5	12.5	1.0	4.5	7.0
Merged-chr7-101559638-3	chr7	101559068	101560068	+	797.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033804, intron 1 of 3)	B3A|SINE|B2	1297.0	NR_033804	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	14.0	30.0	11.0	23.0	56.5	9.0
Merged-chr3-108574207-4	chr3	108573707	108574707	+	797.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025444, intron 2 of 3)	intron (NM_025444, intron 2 of 3)	2508.0	NM_025444	99730.0	Mm.24431	NM_025444	ENSMUSG00000048100	Taf13	1810004N01Rik|2010309N11Rik|AI847295|TAFII18	TATA-box binding protein associated factor 13	protein-coding	2.0	0.0	0.0	2.0	0.0	0.0
Merged-chr13-12647919-4	chr13	12647407	12648407	+	797.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003568, intron 1 of 6)	intron (NR_003568, intron 1 of 6)	2488.0	NR_003568	664862.0	Mm.415635	NR_003568		Gpr137b-ps	2310041G17Rik	G protein-coupled receptor 137B, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-44364484-2	chr15	44363984	44364984	+	797.6999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63627.0	NM_175009	223527.0	Mm.291828	NM_175009	ENSMUSG00000022338	Eny2	1810057B09Rik|6720481I12|DC6|Ey2	ENY2 transcription and export complex 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-123431371-4	chr7	123430875	123431875	+	797.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23558.0	NM_001355050	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118479992-3	chr7	118479502	118480502	+	797.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	11973.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	17.0	45.5	26.0	26.0	47.5	50.5
Merged-chr5-72166261-2	chr5	72165761	72166761	+	797.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_178599, intron 1 of 4)	intron (NM_178599, intron 1 of 4)	1928.0	NM_001356611	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120984056-3	chr7	120983554	120984554	+	797.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028955, intron 1 of 7)	intron (NM_028955, intron 1 of 7)	1545.0	NM_028955	74466.0	Mm.189707	NM_028955	ENSMUSG00000030877	Mfsd13b	4933427G17Rik	major facilitator superfamily domain containing 13B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-85262322-1	chr16	85261822	85262822	+	797.666687	f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-88615.0	NM_001198826	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	2.0	20.5	4.5	18.0	11.5	3.0
Merged-chr13-40843595-3	chr13	40843059	40844059	+	797.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16209.0	NM_023887	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-34667116-3	chr16	34666662	34667662	+	797.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030744, intron 2 of 5)	intron (NM_030744, intron 2 of 5)	15951.0	NM_030744	76378.0	Mm.23515	NM_030744	ENSMUSG00000022832	Ropn1	1700008N21Rik|ODF6|RHPNAP1|Rppn|ropporin	ropporin, rhophilin associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-93888099-3	chr11	93887636	93888636	+	797.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346525, intron 2 of 17)	B2_Mm1t|SINE|B2	1917.0	NM_134012	103537.0	Mm.210334	NM_134012	ENSMUSG00000059474	Mbtd1	AA408199|AI194990|hemp	mbt domain containing 1	protein-coding	5.0	2.0	7.0	7.0	3.5	5.0
Merged-chr4-72168680-1	chr4	72168180	72169180	+	797.666687	f0_balb.idr	intron (NM_001285531, intron 6 of 6)	intron (NM_001285531, intron 6 of 6)	32213.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-12955999-3	chr10	12955498	12956498	+	797.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029075, intron 1 of 2)	intron (NM_029075, intron 1 of 2)	8261.0	NM_029075	74732.0	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5837326-1	chr11	5836826	5837826	+	797.666687	f1_c57bl6.idr	intron (NM_017401, intron 1 of 10)	intron (NM_017401, intron 1 of 10)	690.0	NM_017401	54125.0	Mm.260194	NM_017401	ENSMUSG00000020474	Polm	AI462166|B230309I03Rik|Tdt-N	polymerase (DNA directed), mu	protein-coding	24.0	58.0	80.0	48.0	65.0	69.5
Merged-chr18-77934391-2	chr18	77933891	77934891	+	797.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4076.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-145112365-2	chr5	145111883	145112883	+	797.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1873.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-83152358-4	chr10	83151870	83152870	+	797.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021439, intron 2 of 2)	intron (NM_021439, intron 2 of 2)	166873.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-89960603-2	chr16	89960103	89961103	+	797.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145886, intron 1 of 27)	intron (NM_001145886, intron 1 of 27)	224.0	NM_009384	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-42352591-2	chr6	42352091	42353091	+	797.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289618, intron 4 of 9)	intron (NM_001289618, intron 4 of 9)	2763.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96551996-2	chr3	96551531	96552531	+	797.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5926.0	NM_023719	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	21.5	49.5	23.5	7.5	34.0	18.5
Merged-chr14-59201982-4	chr14	59201478	59202478	+	797.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027764, intron 1 of 11)	intron (NM_027764, intron 1 of 11)	750.0	NM_001360610	71330.0	Mm.234195	NM_027764	ENSMUSG00000035469	Rcbtb1	5430409I18Rik|AW111883|CLLD7|CLLL7	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-63138918-4	chr11	63138427	63139427	+	797.645813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302255, intron 3 of 4)	intron (NM_001302255, intron 3 of 4)	6124.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153092361-3	chr2	153091861	153092861	+	797.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16107.0	NM_001172117	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	27.0	49.5	41.0	16.0	36.5	28.5
Merged-chr3-60474375-3	chr3	60473903	60474903	+	797.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253713, intron 2 of 9)	intron (NM_001253713, intron 2 of 9)	1573.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61690342-3	chr14	61689844	61690844	+	797.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7971.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-11964258-4	chr15	11963758	11964758	+	797.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2804.0	NR_040447	73339.0	Mm.231975	NR_040447	ENSMUSG00000099349	1700047G03Rik	-	RIKEN cDNA 1700047G03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24975410-4	chr7	24974888	24975888	+	797.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2660.0	NM_010261	14470.0	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171632713-3	chr1	171632217	171633217	+	797.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_144539, exon 8 of 8)	3' UTR (NM_144539, exon 8 of 8)	9183.0	NR_106151	102465784.0		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	12.5	42.0	19.5	10.5	47.0	17.0
Merged-chr6-129234696-3	chr6	129234228	129235228	+	797.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040268, intron 2 of 3)	intron (NR_040268, intron 2 of 3)	3317.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	20.0	76.0	59.5	26.5	57.5	38.0
Merged-chr11-74634709-4	chr11	74634202	74635202	+	797.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013784, intron 2 of 3)	intron (NM_001013784, intron 2 of 3)	-14793.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	10.0	3.0	0.5	6.0	0.0	0.5
Merged-chr3-79484850-2	chr3	79484350	79485350	+	797.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 12 of 16)	intron (NM_001162999, intron 12 of 16)	82829.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	13.5	3.0	16.5	1.5	0.5	3.0
Merged-chr16-38799342-2	chr16	38798803	38799803	+	797.5	f0_balb.idr|f1_balb.idr	intron (NM_178924, intron 1 of 7)	intron (NM_178924, intron 1 of 7)	900.0	NM_178924	22268.0	Mm.130793	NM_178924	ENSMUSG00000049436	Upk1b	AI413235|Tspan20|UPIb|Upk1	uroplakin 1B	protein-coding	8.5	15.5	4.5	15.0	34.0	19.0
Merged-chr15-99249276-2	chr15	99248776	99249776	+	797.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164156, intron 3 of 13)	intron (NM_001164156, intron 3 of 13)	-2512.0	NR_045627	73600.0	Mm.475134	NR_045627	ENSMUSG00000100599	1700120C14Rik	-	RIKEN cDNA 1700120C14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5629322-4	chr11	5628814	5629814	+	797.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023816, exon 16 of 27)	exon (NM_023816, exon 16 of 27)	59630.0	NM_023816	76389.0	Mm.67300	NM_023816	ENSMUSG00000020481	Ankrd36	1700008J08Rik|1700012M14Rik|Ankrd48	ankyrin repeat domain 36	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr15-73600170-2	chr15	73599670	73600670	+	797.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357747, intron 2 of 7)	intron (NM_001357747, intron 2 of 7)	-3644.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-95853657-1	chr7	95853157	95854157	+	797.5	f0_balb.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-317587.0	NM_001310762	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0.0	0.0	3.0	0.0	0.0	0.0
Merged-chr18-9729818-2	chr18	9729318	9730318	+	797.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 2 of 9)	(TG)n|Simple_repeat|Simple_repeat	22170.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	0.0	1.5	5.0	0.0	1.5	7.5
Merged-chr6-57703909-3	chr6	57703427	57704427	+	797.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133737, intron 1 of 8)	Lx8|LINE|L1	1472.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148688761-2	chr4	148688265	148689265	+	797.5	f0_balb.idr|f1_balb.idr	Intergenic	B1F2|SINE|Alu	45448.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	5.5	0.0	0.5	14.5	55.0	20.0
Merged-chr7-35036668-2	chr7	35036168	35037168	+	797.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 12 of 14)	intron (NM_008820, intron 12 of 14)	19898.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139188407-3	chr7	139187881	139188881	+	797.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021302, exon 1 of 12)	5' UTR (NM_021302, exon 1 of 12)	113.0	NM_021302	57740.0	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	1.5	1.0	1.5	0.0	1.5	0.0
Merged-chr1-123278068-2	chr1	123277568	123278568	+	797.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	767491.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-13526822-2	chr2	13526322	13527322	+	797.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010067, intron 2 of 10)	B2_Mm2|SINE|B2	17842.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46522244-2	chr17	46521744	46522744	+	797.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081335, exon 19 of 41)	exon (NM_001081335, exon 19 of 41)	24144.0	NM_001081335	78309.0	Mm.329076	NM_001081335	ENSMUSG00000040327	Cul9	1810035I07Rik|Cul-9|Parc|mKIAA0708	cullin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99144540-2	chr7	99144040	99145040	+	797.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3396.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	13.5	17.5	13.5	9.5	1.0	10.5
Merged-chr7-118126958-2	chr7	118126458	118127458	+	797.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019419, intron 2 of 5)	intron (NM_019419, intron 2 of 5)	2667.0	NM_019419	54208.0	Mm.29924	NM_019419	ENSMUSG00000030654	Arl6ip1	AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding	7.5	6.5	6.5	7.5	6.5	6.5
Merged-chr7-4381842-2	chr7	4381342	4382342	+	797.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163014, intron 4 of 7)	intron (NM_001163014, intron 4 of 7)	15902.0	NM_001163014	243816.0	Mm.248662	NM_001163014	ENSMUSG00000078810	Gp6	9830166G18Rik|Gm469|Gpvi	glycoprotein 6 (platelet)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166786053-2	chr2	166785553	166786553	+	797.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7714.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101264539-3	chr15	101264093	101265093	+	797.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2253.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	12.0	9.5	12.0	0.5	17.0	14.0
Merged-chr1-165855927-2	chr1	165855427	165856427	+	797.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113391, intron 2 of 7)	intron (NM_001113391, intron 2 of 7)	67246.0	NM_001113392	12503.0	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-107456188-2	chr10	107455688	107456688	+	797.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	29946.0	NM_008656	17877.0	Mm.4984	NM_008656	ENSMUSG00000000435	Myf5	B130010J22Rik|Myf-5|bHLHc2	myogenic factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-27021876-2	chr8	27021376	27022376	+	797.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1923.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30603204-2	chr2	30602704	30603704	+	797.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030137, intron 1 of 1)	intron (NM_030137, intron 1 of 1)	8160.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-10184429-2	chr9	10183929	10184929	+	797.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170787, intron 3 of 24)	(CA)n|Simple_repeat|Simple_repeat	289998.0	NR_105745	102466147.0		NR_105745	ENSMUSG00000098408	Mir6237	Gm27411|mmu-mir-6237	microRNA 6237	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-16747821-2	chr15	16747321	16748321	+	797.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-30280.0	NM_009869	12565.0	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-17873825-3	chr14	17873325	17874325	+	797.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-107819.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80995895-4	chr7	80995375	80996375	+	797.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178707, intron 1 of 9)	L2c|LINE|L2	2191.0	NM_178707	233410.0	Mm.29525	NM_178707	ENSMUSG00000005621	Zfp592	A730014M16Rik|Znf592	zinc finger protein 592	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120233041-2	chr4	120232541	120233541	+	797.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54220.0	NM_194060	329934.0	Mm.277090	NM_194060	ENSMUSG00000052135	Foxo6	-	forkhead box O6	protein-coding	0.0	7.5	0.0	0.0	0.0	0.0
Merged-chr2-4507274-2	chr2	4506774	4507774	+	797.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 5 of 23)	ID_B1|SINE|B4	-52480.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-28518883-2	chr16	28518417	28519417	+	797.5	f0_balb.idr|f1_balb.idr	intron (NM_010199, intron 2 of 5)	L1MC4a|LINE|L1	45578.0	NM_001357064	14167.0	Mm.7996	NM_010199	ENSMUSG00000022523	Fgf12	AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1	fibroblast growth factor 12	protein-coding	1.0	0.0	1.5	3.5	1.5	4.0
Merged-chr6-15718085-2	chr6	15717585	15718585	+	797.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	-2576.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108296581-2	chr3	108296074	108297074	+	797.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_019972, intron 1 of 19)	intron (NM_019972, intron 1 of 19)	12510.0	NM_019972	20661.0	Mm.157119	NM_019972	ENSMUSG00000068747	Sort1	2900053A11Rik|AI852375|Ntr3|Ntsr3	sortilin 1	protein-coding	11.5	16.0	4.5	8.0	20.5	5.5
Merged-chr8-3534944-2	chr8	3534444	3535444	+	797.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152827, intron 20 of 31)	intron (NR_152827, intron 20 of 31)	18081.0	NR_152827	50767.0	Mm.23085	NM_015801	ENSMUSG00000004565	Pnpla6	AI661849|MSws|Nte	patatin-like phospholipase domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127846292-2	chr7	127845792	127846792	+	797.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009294, intron 7 of 10)	intron (NM_009294, intron 7 of 10)	4484.0	NM_009294	20909.0	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	1.0	7.0	2.0	0.0	3.5	1.5
Merged-chr13-64038323-2	chr13	64037823	64038823	+	797.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50878.0	NM_008291	15487.0	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	0.0	0.0	2.0	0.0	1.0	4.5
Merged-chr11-97686817-1	chr11	97686317	97687317	+	797.5	f1_c57bl6.idr	intron (NM_001085500, intron 2 of 2)	intron (NM_001085500, intron 2 of 2)	865.0	NM_001085500	217149.0	Mm.29659	NM_001085500	ENSMUSG00000078695	Cisd3	Mel-13|Mel13	CDGSH iron sulfur domain 3	protein-coding	0.0	0.5	2.5	2.5	4.5	0.5
Merged-chr9-124060149-2	chr9	124059649	124060649	+	797.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38178.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38130755-4	chr16	38130244	38131244	+	797.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 1 of 11)	intron (NM_001347232, intron 1 of 11)	-41484.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	15.5	94.0	55.5	30.5	90.5	79.0
Merged-chr5-64228309-2	chr5	64227809	64228809	+	797.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	MER21B|LTR|ERVL	-2048.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167686838-3	chr2	167686373	167687373	+	797.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-2042.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38364060-2	chr15	38363560	38364560	+	797.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63349.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141534447-2	chr7	141533947	141534947	+	797.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026522, intron 1 of 10)	PB1D10|SINE|Alu	5410.0	NM_026522	68038.0	Mm.245355	NM_026522	ENSMUSG00000025512	Chid1	3110023E09Rik|AI841869	chitinase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69402278-2	chr11	69401778	69402778	+	797.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001017426, exon 14 of 23)	exon (NM_001017426, exon 14 of 23)	-4044.0	NM_025915	67020.0	Mm.390406	NM_025915	ENSMUSG00000045377	Tmem88	2600017H02Rik	transmembrane protein 88	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91256923-3	chr2	91256461	91257461	+	797.488892	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028733)	promoter-TSS (NM_028733)	148.0	NM_001289678	80708.0	Mm.236650	NM_028733	ENSMUSG00000027257	Pacsin3	4921507A02Rik|6330413E15Rik|AW413130	protein kinase C and casein kinase substrate in neurons 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118360784-3	chr11	118360288	118361288	+	797.488892	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5377.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54830741-4	chr12	54830248	54831248	+	797.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32129.0	NM_007688	12632.0	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-177623626-4	chr1	177623117	177624117	+	797.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19326.0	NR_037994	75589.0	Mm.86666	NR_037994	ENSMUSG00000101746	2310043L19Rik	-	RIKEN cDNA 2310043L19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118703420-3	chr9	118702916	118703916	+	797.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 15 of 27)	intron (NM_133721, intron 15 of 27)	-8276.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	4.0	20.0	11.5	16.5	16.5	16.0
Merged-chr3-89251482-3	chr3	89251041	89252041	+	797.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5068.0	NM_001310625	66059.0	Mm.177991	NM_025327	ENSMUSG00000042747	Krtcap2	0610010I12Rik|Kcp2	keratinocyte associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36869808-4	chr1	36869308	36870308	+	797.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 4 of 40)	intron (NM_018872, intron 4 of 40)	69719.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-105018130-3	chr14	105017629	105018629	+	797.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	96547.0	NR_040628	100502987.0	Mm.124957	NR_040628		Gm17066	-	predicted gene 17066	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11263162-4	chr19	11262682	11263682	+	797.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007641, intron 1 of 6)	intron (NM_007641, intron 1 of 6)	2969.0	NM_007641	12482.0	Mm.4046	NM_007641	ENSMUSG00000024673	Ms4a1	AA960661|Cd20|Ly-44|Ms4a2	membrane-spanning 4-domains, subfamily A, member 1	protein-coding	12.0	29.5	28.5	25.0	40.5	22.5
Merged-chr9-108346942-2	chr9	108346442	108347442	+	797.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311157)	promoter-TSS (NM_001311157)	-889.0	NM_001311157	22258.0	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146791543-2	chr5	146791043	146792043	+	797.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	3413.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	37.5	53.5	29.0	32.0	69.5	39.5
Merged-chr17-47141002-6	chr17	47140558	47141558	+	797.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 1 of 19)	intron (NM_001097623, intron 1 of 19)	116.0	NM_001097623	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-113469715-4	chr2	113469221	113470221	+	797.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 2 of 16)	intron (NM_001285459, intron 2 of 16)	28657.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	11.0	5.5	1.0	4.0	2.0	0.5
Merged-chr12-79002621-3	chr12	79002108	79003108	+	797.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178745, intron 1 of 2)	Lx9|LINE|L1	4669.0	NM_178745	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-154112653-1	chr1	154112153	154113153	+	797.333313	f0_balb.idr	Intergenic	MIR|SINE|MIR	-88534.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94069637-3	chr11	94069133	94070133	+	797.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025428, intron 4 of 26)	intron (NM_001025428, intron 4 of 26)	25428.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100199023-3	chr13	100198579	100199579	+	797.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126182, intron 1 of 15)	Lx9|LINE|L1	3043.0	NM_001126182	17948.0	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150926652-2	chr2	150926152	150927152	+	797.333313	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163476)	TTS (NM_001163476)	17058.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59798520-3	chr13	59798027	59799027	+	797.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153538, intron 14 of 27)	intron (NM_153538, intron 14 of 27)	24620.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-13853448-3	chr6	13852957	13853957	+	797.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-13515.0	NM_145066	64450.0	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130030024-3	chr5	130029531	130030531	+	797.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007761, intron 1 of 5)	MTD|LTR|ERVL-MaLR	725.0	NM_007761	12909.0	Mm.18072	NM_007761	ENSMUSG00000025532	Crcp	AL022669	calcitonin gene-related peptide-receptor component protein	protein-coding	27.0	43.5	29.5	12.0	64.5	38.5
Merged-chr7-19202694-3	chr7	19202168	19203168	+	797.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347582, intron 19 of 21)	intron (NM_001347582, intron 19 of 21)	-9870.0	NM_175668	319197.0	Mm.135984	NM_175668	ENSMUSG00000044317	Gpr4	-	G protein-coupled receptor 4	protein-coding	5.0	10.0	1.0	5.5	0.0	3.0
Merged-chr5-105139204-2	chr5	105138725	105139725	+	797.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359079, intron 1 of 11)	intron (NM_001359079, intron 1 of 11)	361.0	NM_001256005	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	34.5	44.0	34.0	12.5	14.0	20.0
Merged-chr12-111695727-2	chr12	111695227	111696227	+	797.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17226.0	NM_001324481	70369.0	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-150138193-2	chr5	150137693	150138693	+	797.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	119518.0	NM_001289566	140498.0	Mm.444643	NM_080468	ENSMUSG00000053368	Rxfp2	Gpr106|Great|Lgr8	relaxin/insulin-like family peptide receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10394025-2	chr17	10393525	10394525	+	797.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62191.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119388097-2	chr11	119387597	119388597	+	797.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2375.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147586882-2	chr4	147586382	147587382	+	797.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33605.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63407543-2	chr4	63407094	63408094	+	797.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4149.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43571480-2	chr4	43570980	43571980	+	797.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172692, intron 3 of 16)	intron (NM_172692, intron 3 of 16)	-7255.0	NM_172866	242406.0	Mm.259311	NM_172866	ENSMUSG00000028468	Rgp1	1110029E03Rik|AI527196|F730001J03|mKIAA0258	RAB6A GEF compex partner 1	protein-coding	0.0	0.0	3.5	0.0	0.0	1.0
Merged-chr11-80477623-2	chr11	80477090	80478090	+	797.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_009871, exon 1 of 1)	exon (NM_009871, exon 1 of 1)	567.0	NM_009871	12569.0	Mm.142275	NM_009871	ENSMUSG00000048895	Cdk5r1	Cdk5r|D11Bwg0379e|p25|p35	cyclin-dependent kinase 5, regulatory subunit 1 (p35)	protein-coding	0.0	0.0	1.0	1.5	2.0	0.0
Merged-chr12-85078030-3	chr12	85077538	85078538	+	797.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17577.0	NM_001361239	73422.0	Mm.311944	NM_175198	ENSMUSG00000042320	Prox2	1700058C01Rik	prospero homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168005883-3	chr2	168005368	168006368	+	797.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080708, intron 2 of 21)	intron (NM_001080708, intron 2 of 21)	4725.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121946097-3	chr5	121945598	121946598	+	797.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007804, intron 2 of 22)	intron (NM_007804, intron 2 of 22)	97101.0	NM_001359949	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	7.5	0.0	0.5	11.5	0.0	0.5
Merged-chr1-124045503-7	chr1	124045059	124046059	+	797.221436	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199021)	promoter-TSS (NM_199021)	0.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-79516454-4	chr14	79515967	79516967	+	797.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	793.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-7863921-3	chr17	7863418	7864418	+	797.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58944.0	NM_001081416	68655.0	Mm.379161	NM_001081416	ENSMUSG00000071984	Fndc1	1110027O12Rik|1110051A18Rik|mKIAA1866	fibronectin type III domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88209952-4	chr8	88209475	88210475	+	797.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164499, intron 2 of 11)	(TG)n|Simple_repeat|Simple_repeat	10762.0	NM_001164498	214627.0	Mm.491211	NM_001164497	ENSMUSG00000036779	Papd5	5730445M16Rik|5830428A09	PAP associated domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-65141587-2	chr6	65141087	65142087	+	797.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_019455, intron 1 of 5)	B3A|SINE|B2	3143.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71541641-2	chr8	71541099	71542099	+	797.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-1331.0	NM_028617	73711.0	Mm.307770	NM_028617	ENSMUSG00000031813	Mvb12a	1110012M11Rik|Fam125a	multivesicular body subunit 12A	protein-coding	8.5	38.5	19.0	38.5	118.5	50.5
Merged-chr13-55519671-3	chr13	55519113	55520113	+	797.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6167.0	NM_001114088	67399.0	Mm.275648	NM_026131	ENSMUSG00000021493	Pdlim7	LMP	PDZ and LIM domain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5238066-3	chr17	5237589	5238589	+	797.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	180678.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110631528-3	chr7	110631032	110632032	+	797.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3875.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-85207719-3	chr13	85207223	85208223	+	797.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023243, intron 6 of 8)	intron (NM_023243, intron 6 of 8)	18338.0	NM_023243	66671.0	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145837221-2	chr4	145836721	145837721	+	797.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033612)	promoter-TSS (NR_033612)	2.0	NR_033612	236069.0	Mm.276881	NR_033612	ENSMUSG00000096233	Gm13238	-	carnitine deficiency-associated gene expressed in ventricle 3 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99064416-2	chr9	99063916	99064916	+	797.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 12 of 23)	intron (NM_029094, intron 12 of 23)	-28726.0	NM_001080776	382097.0	Mm.293727	NM_001080776	ENSMUSG00000044860	Gm1123	AV052824|CLSP	predicted gene 1123	protein-coding	0.0	0.5	0.5	0.0	0.5	1.0
Merged-chr19-53107086-4	chr19	53106602	53107602	+	797.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30850.0	NR_045320	78457.0	Mm.76932	NR_045320	ENSMUSG00000099988	1700054A03Rik	-	RIKEN cDNA 1700054A03 gene	ncRNA	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr16-20671963-4	chr16	20671458	20672458	+	797.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304432)	promoter-TSS (NM_001304432)	-769.0	NM_145941	208643.0	Mm.260256	NM_145941	ENSMUSG00000045983	Eif4g1	E030015G23Rik|eIF-4-gamma 1|eIF-4G 1|eIF-4G1|eIF4GI	eukaryotic translation initiation factor 4, gamma 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62121917-4	chr9	62121422	62122422	+	797.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_039595)	TTS (NR_039595)	672.0	NR_039595	100628602.0		NR_039595	ENSMUSG00000092696	Mir5133	mir-5133|mmu-mir-5133|mu-mir-5133	microRNA 5133	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45904922-4	chr13	45904495	45905495	+	797.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	59996.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-52141647-4	chr1	52141137	52142137	+	797.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205313, intron 11 of 24)	RLTR28|LTR|ERVL	22015.0	NM_001205313	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34130050-2	chr17	34129531	34130531	+	797.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360530, intron 1 of 5)	RMER19A|LTR|ERVK	4513.0	NM_001360530	14998.0	Mm.16373	NM_010386	ENSMUSG00000037649	H2-DMa	H-2Ma|H2-Ma	histocompatibility 2, class II, locus DMa	protein-coding	8.0	23.0	7.0	3.5	15.5	27.5
Merged-chr18-32370447-3	chr18	32369965	32370965	+	797.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045403, intron 2 of 2)	Lx9|LINE|L1	-6752.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84620660-3	chr2	84620162	84621162	+	797.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355064, intron 4 of 18)	intron (NM_001355064, intron 4 of 18)	28818.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-49400366-2	chr17	49399866	49400866	+	797.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27998.0	NM_028464	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127508447-3	chr10	127507945	127508945	+	797.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177707, exon 12 of 12)	exon (NM_177707, exon 12 of 12)	-6494.0	NM_001098789	407790.0	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20125196-4	chr13	20124677	20125677	+	797.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	34670.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	22.5	31.0	22.0	17.5	40.5	19.5
Merged-chr7-49751276-4	chr7	49750709	49751709	+	797.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-7897.0	NM_001146053	53415.0	Mm.20801	NM_016865	ENSMUSG00000039745	Htatip2	AW111545|Cc3|Tip30	HIV-1 Tat interactive protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66877188-3	chr9	66876669	66877669	+	797.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	-42463.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128702805-4	chr10	128702310	128703310	+	797.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183417, intron 3 of 7)	RSINE1|SINE|B4	2241.0	NM_183417	12566.0	Mm.111326	NM_016756	ENSMUSG00000025358	Cdk2	A630093N05Rik	cyclin-dependent kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79133240-3	chr12	79132783	79133783	+	797.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009705, intron 2 of 7)	B1_Mur2|SINE|Alu	2495.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	0.0	4.0	1.5	0.0	13.5	15.0
Merged-chr10-97402711-2	chr10	97402211	97403211	+	797.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20767.0	NR_039547	100628616.0		NR_039547	ENSMUSG00000105557	Mir3966	mmu-mir-3966|mu-mir-3966	microRNA 3966	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-63753925-2	chr1	63753425	63754425	+	797.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001256158)	TTS (NM_001256158)	15342.0	NM_001256158	74426.0	Mm.159197	NM_001256158	ENSMUSG00000025961	4933402D24Rik	-	RIKEN cDNA 4933402D24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117445268-2	chr8	117444768	117445768	+	797.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 10 of 20)	intron (NM_028941, intron 10 of 20)	-7755.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87098037-2	chr17	87097527	87098527	+	797.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-9652.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	1.0	7.0	4.0	62.5	42.0	49.5
Merged-chr2-148655828-2	chr2	148655328	148656328	+	797.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16787.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-24282569-1	chr19	24282069	24283069	+	797.0	f1_balb.idr	Intergenic	Intergenic	-1983.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	8.0	5.5	7.0	0.5	6.5	1.0
Merged-chr14-20711174-2	chr14	20710674	20711674	+	797.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027996, intron 3 of 25)	intron (NM_027996, intron 3 of 25)	3622.0	NM_001252082	268721.0	Mm.275082	NM_027996	ENSMUSG00000021819	Zswim8	2310021P13Rik|4832404P21Rik|Kiaa0913|mKIAA0913	zinc finger SWIM-type containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88583830-2	chr17	88583330	88584330	+	797.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028658, intron 20 of 21)	intron (NM_028658, intron 20 of 21)	-42725.0	NM_029858	77057.0	Mm.482203	NM_029858	ENSMUSG00000033855	Ston1	4921524J06Rik|C86231|Salf|Sblf	stonin 1	protein-coding	0.0	4.0	0.0	0.0	3.5	0.5
Merged-chr5-23386710-1	chr5	23386210	23387210	+	797.0	f1_balb.idr	Intergenic	Intergenic	47643.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	1.0	2.0	4.0	5.5	6.5	8.5
Merged-chr8-84194383-1	chr8	84193883	84194883	+	797.0	f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-14135.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	2.5	5.0	1.0	1.5	5.5	1.0
Merged-chr15-93298392-4	chr15	93297916	93298916	+	797.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024189, intron 2 of 3)	intron (NM_024189, intron 2 of 3)	-23237.0	NM_001346785	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103114634-3	chr11	103114130	103115130	+	797.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1695.0	NM_138753	192231.0	Mm.8763	NM_138753	ENSMUSG00000048878	Hexim1	7330426E13Rik|CLP-1|Clp1|HIS1	hexamethylene bis-acetamide inducible 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90223105-2	chr5	90222605	90223605	+	797.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028088, intron 1 of 5)	intron (NR_028088, intron 1 of 5)	891.0	NR_028088	231430.0	Mm.319697	NM_001033310	ENSMUSG00000035505	Cox18	BC038311	cytochrome c oxidase assembly protein 18	protein-coding	4.5	2.0	1.0	8.5	1.0	0.0
Merged-chr18-43453317-3	chr18	43452859	43453859	+	797.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15073.0	NM_001291455	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29670360-4	chr2	29669869	29670869	+	797.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	B3A|SINE|B2	50649.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46818451-1	chr11	46817951	46818951	+	797.0	f1_c57bl6.idr	intron (NM_178759, intron 3 of 8)	(CA)n|Simple_repeat|Simple_repeat	7652.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	22.0	52.5	70.0	30.0	97.5	71.5
Merged-chr9-22005367-2	chr9	22004867	22005867	+	797.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293650, intron 5 of 17)	intron (NM_001293650, intron 5 of 17)	2379.0	NM_001293650	19089.0	Mm.214593	NM_008925	ENSMUSG00000003402	Prkcsh	80K-H|PKCSH	protein kinase C substrate 80K-H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-89998269-2	chr18	89997769	89998769	+	797.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2A|LINE|L1	-229133.0	NM_001039173	623279.0	Mm.447164	NM_001039173	ENSMUSG00000073514	Dok6	Dok-6	docking protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107884515-2	chr13	107884015	107885015	+	797.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	ID4|SINE|ID	5549.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115494038-1	chr5	115493538	115494538	+	797.0	f1_c57bl6.idr	Intergenic	Intergenic	-9554.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	0.0	3.5	3.0	0.0	0.0	0.0
Merged-chr6-125097478-1	chr6	125096978	125097978	+	797.0	f1_c57bl6.idr	TTS (NR_106012)	TTS (NR_106012)	454.0	NR_106012	102466272.0		NR_106012	ENSMUSG00000098762	Mir7045	Gm27758|mmu-mir-7045	microRNA 7045	ncRNA	1.0	12.0	4.0	8.0	7.0	1.5
Merged-chr10-81300331-3	chr10	81299839	81300839	+	797.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	PB1D7|SINE|Alu	7376.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-169089282-1	chr2	169088782	169089782	+	797.0	f0_balb.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	111013.0	NR_040326	75508.0	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-107171338-2	chr14	107170838	107171838	+	797.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-684818.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-98992781-2	chr6	98992281	98993281	+	797.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 8 of 17)	intron (NM_001197321, intron 8 of 17)	35517.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-73478649-2	chr6	73478149	73479149	+	797.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7628.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	2.5	8.0	10.0	2.5	8.0	10.5
Merged-chr9-85272146-1	chr9	85271646	85272646	+	797.0	f0_balb.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	54978.0	NM_001160378	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	4.5	2.5	0.5	5.0	3.0	0.5
Merged-chr2-102878635-2	chr2	102878135	102879135	+	797.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	23030.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	16.0	18.0	18.5	8.5	10.5	16.5
Merged-chr4-40018372-1	chr4	40017872	40018872	+	797.0	f0_balb.idr	Intergenic	Intergenic	-124893.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0.0	0.5	0.0	0.0	0.5	0.0
Merged-chr11-89060102-1	chr11	89059602	89060602	+	797.0	f1_c57bl6.idr	promoter-TSS (NR_110336)	promoter-TSS (NR_110336)	646.0	NM_019505	56077.0	Mm.153695	NM_019505	ENSMUSG00000000276	Dgke	C87606|DAGK6|DGK	diacylglycerol kinase, epsilon	protein-coding	3.0	5.5	3.5	8.0	15.0	14.0
Merged-chr1-135634656-2	chr1	135634156	135635156	+	797.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36880.0	NR_151586	215714.0	Mm.472859	NM_175447		Gm4793	EG215714	predicted gene 4793	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148572353-2	chr2	148571853	148572853	+	797.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-100262.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106431539-2	chr8	106431039	106432039	+	797.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16200.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-145199119-1	chr5	145198619	145199619	+	797.0	f1_balb.idr	intron (NM_023322, intron 1 of 2)	MTEa|LTR|ERVL-MaLR	2763.0	NM_023322	67235.0	Mm.432480	NM_023322	ENSMUSG00000029627	Zkscan14	2310046C23Rik|2810437E14Rik|Zfp99|Znf394	zinc finger with KRAB and SCAN domains 14	protein-coding	3.0	1.5	6.5	1.0	2.0	1.5
Merged-chr8-27024717-2	chr8	27024217	27025217	+	797.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153592, intron 1 of 11)	intron (NM_153592, intron 1 of 11)	918.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-35138233-1	chr4	35137733	35138733	+	797.0	f0_balb.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-13822.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-99130278-3	chr6	99129758	99130758	+	797.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053202, intron 4 of 18)	intron (NM_053202, intron 4 of 18)	-101960.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114872953-1	chr6	114872453	114873453	+	797.0	f0_balb.idr	intron (NM_001356371, intron 3 of 5)	intron (NM_001356371, intron 3 of 5)	48868.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56814001-2	chr17	56813501	56814501	+	797.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009056, intron 1 of 16)	intron (NM_009056, intron 1 of 16)	17007.0	NM_009056	19725.0	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96564001-2	chr3	96563475	96564475	+	797.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040409, intron 1 of 3)	ID_B1|SINE|B4	2826.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	12.5	25.5	39.5	12.0	13.5	16.5
Merged-chr11-107313256-2	chr11	107312756	107313756	+	797.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	intron (NR_153311, intron 4 of 9)	-123875.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-96116298-1	chr6	96115798	96116798	+	797.0	f0_balb.idr	intron (NM_182808, intron 2 of 4)	intron (NM_182808, intron 2 of 4)	3144.0	NM_182808	320265.0	Mm.489890	NM_182808	ENSMUSG00000059187	Fam19a1	C630007B19Rik|FAM19A1 TAFA-1|TAFA1|Tafa-1	family with sequence similarity 19, member A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27471736-2	chr7	27471236	27472236	+	797.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2104.0	NM_133210	170742.0	Mm.200120	NM_133210	ENSMUSG00000055200	Sertad3	AW124805|D1Mgi51|Rbt1|Sei3	SERTA domain containing 3	protein-coding	1.0	16.0	12.0	1.0	19.5	12.0
Merged-chr19-3615707-1	chr19	3615207	3616207	+	797.0	f1_c57bl6.idr	exon (NM_008513, exon 10 of 23)	exon (NM_008513, exon 10 of 23)	-39958.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	0.5	1.0	1.5	3.5	5.5	3.0
Merged-chr1-180810061-2	chr1	180809561	180810561	+	797.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008210, intron 3 of 3)	intron (NM_008210, intron 3 of 3)	3544.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141602672-2	chr4	141602172	141603172	+	797.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133754, intron 1 of 8)	intron (NM_133754, intron 1 of 8)	-2748.0	NM_001163256	74202.0	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	6.0	3.0	2.5	0.0	0.0	3.0
Merged-chr11-22853980-2	chr11	22853480	22854480	+	797.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	5755.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-89146478-3	chr4	89145972	89146972	+	797.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024433, intron 1 of 7)	intron (NM_024433, intron 1 of 7)	9102.0	NM_024433	66902.0	Mm.28500	NM_024433	ENSMUSG00000062937	Mtap	1300019I21Rik|MSAP	methylthioadenosine phosphorylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107152132-2	chr11	107151632	107152632	+	797.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5276.0	NM_001308498	105734734.0		NM_001308498		Gm11715	-	predicted gene 11715	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19265025-2	chr7	19264525	19265525	+	797.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009499, intron 1 of 12)	ZP3AR|Satellite|Satellite	6829.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	2.0	16.0	5.5	3.0	22.0	5.5
Merged-chr4-116719600-4	chr4	116719112	116720112	+	796.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1343.0	NM_146151	230661.0	Mm.482431	NM_146151	ENSMUSG00000033985	Tesk2	-	testis-specific kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-28168695-6	chr5	28168321	28169321	+	796.977783	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010134, intron 1 of 1)	intron (NM_010134, intron 1 of 1)	3125.0	NM_010134	13799.0	Mm.4298	NM_010134	ENSMUSG00000039095	En2	BB131122|En-2	engrailed 2	protein-coding	1.0	4.0	0.0	3.0	2.5	0.0
Merged-chr19-34959611-3	chr19	34959105	34960105	+	796.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183046, intron 25 of 31)	intron (NM_183046, intron 25 of 31)	-5791.0	NR_035473	100316775.0		NR_035473	ENSMUSG00000089151	Mir1950	mmu-mir-1950	microRNA 1950	ncRNA	5.0	4.5	2.0	1.5	2.5	2.0
Merged-chr14-74918774-4	chr14	74918296	74919296	+	796.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	29081.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-69218597-4	chr10	69218079	69219079	+	796.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252638, intron 2 of 11)	intron (NM_001252638, intron 2 of 11)	5385.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42268797-4	chr10	42268207	42269207	+	796.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	8035.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-3122998-3	chr16	3122488	3123488	+	796.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-469410.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-56259839-6	chr9	56259373	56260373	+	796.937012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172924, exon 4 of 7)	exon (NM_172924, exon 4 of 7)	-98803.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96474850-4	chr15	96474400	96475400	+	796.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14057.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155667193-3	chr4	155666698	155667698	+	796.916687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145124, intron 1 of 18)	intron (NM_145124, intron 1 of 18)	2056.0	NM_001256108	76580.0	Mm.235738	NM_145124	ENSMUSG00000029060	Mib2	2210008I11Rik|Zzank1|skd	mindbomb E3 ubiquitin protein ligase 2	protein-coding	8.0	16.0	13.0	5.5	0.0	0.0
Merged-chr4-145295842-4	chr4	145295372	145296372	+	796.895874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009401, intron 4 of 12)	intron (NM_009401, intron 4 of 12)	19275.0	NM_009401	21941.0	Mm.12810	NM_009401	ENSMUSG00000028602	Tnfrsf8	Cd30|D1S166E|Ki|Ki-1	tumor necrosis factor receptor superfamily, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-154103227-3	chr1	154102734	154103734	+	796.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97953.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115278036-3	chr11	115277550	115278550	+	796.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1081.0	NM_007997	14149.0	Mm.4719	NM_007997	ENSMUSG00000018861	Fdxr	AR	ferredoxin reductase	protein-coding	28.0	33.0	36.5	17.0	15.0	21.0
Merged-chr9-65588021-5	chr9	65587526	65588526	+	796.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001357526, exon 2 of 13)	exon (NM_001357526, exon 2 of 13)	866.0	NM_001357527	208084.0	Mm.211032	NM_172453	ENSMUSG00000041064	Pif1	4631410M14|AI449441	PIF1 5'-to-3' DNA helicase	protein-coding	1.5	4.5	2.0	0.0	0.0	0.5
Merged-chr12-45074439-3	chr12	45073980	45074980	+	796.844421	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144552)	promoter-TSS (NM_144552)	3.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	0.0	0.0	2.0	4.5	1.0	1.0
Merged-chr6-53818185-2	chr6	53817685	53818685	+	796.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_025817, exon 1 of 1)	exon (NM_025817, exon 1 of 1)	2640.0	NM_025817	66873.0	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-53385762-2	chr9	53385262	53386262	+	796.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_212445, intron 1 of 7)	RLTR28|LTR|ERVL	1739.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171101859-2	chr1	171101355	171102355	+	796.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Leu-CTG|tRNA|tRNA	-19806.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	8.5	11.0	4.0	8.0	18.0	9.0
Merged-chr4-3069043-2	chr4	3068543	3069543	+	796.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103040.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109596002-2	chr8	109595502	109596502	+	796.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_020046, intron 5 of 8)	intron (NM_020046, intron 5 of 8)	12671.0	NM_020046	56749.0	Mm.23894	NM_020046	ENSMUSG00000031730	Dhodh	2810417D19Rik|AI834883	dihydroorotate dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-92848447-4	chr7	92847956	92848956	+	796.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	25791.0	NM_001355126	74041.0	Mm.26468	NM_028729	ENSMUSG00000030641	Ddias	4632434I11Rik|noxin	DNA damage-induced apoptosis suppressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122599898-4	chr6	122599416	122600416	+	796.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134391, intron 2 of 7)	RSINE1|SINE|B4	2528.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	77.5	286.5	155.0	54.0	208.0	107.0
Merged-chr10-120847967-3	chr10	120847483	120848483	+	796.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177092, intron 4 of 6)	intron (NM_177092, intron 4 of 6)	-9646.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113610733-2	chr5	113610233	113611233	+	796.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32870.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120563231-5	chr2	120562768	120563768	+	796.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011743, intron 1 of 21)	intron (NM_011743, intron 1 of 21)	591.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101935257-2	chr7	101934757	101935757	+	796.8000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1400.0	NM_001162974	69358.0	Mm.214841	NM_027053	ENSMUSG00000064307	Lrrc51	1700008D07Rik|Lrtomt	leucine rich repeat containing 51	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151625915-4	chr1	151625401	151626401	+	796.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	L1MD|LINE|L1	54528.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97487623-4	chr15	97487134	97488134	+	796.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	218188.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62667807-4	chr4	62667289	62668289	+	796.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134257, intron 10 of 15)	L2|LINE|L2	-6185.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107963864-4	chr9	107963377	107964377	+	796.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011634, intron 10 of 14)	B1_Mur4|SINE|Alu	-11690.0	NM_023738	74153.0	Mm.277125	NM_023738	ENSMUSG00000032596	Uba7	1300004C08Rik|Ube1l	ubiquitin-like modifier activating enzyme 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39436296-4	chr10	39435791	39436791	+	796.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	66492.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123801761-3	chr9	123801263	123802263	+	796.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110253, intron 14 of 17)	intron (NM_001110253, intron 14 of 17)	-4714.0	NM_030712	80901.0	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34840479-3	chr1	34839990	34840990	+	796.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160236, intron 1 of 6)	intron (NM_001160236, intron 1 of 6)	2560.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17448000-3	chr17	17447508	17448508	+	796.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025681, intron 4 of 5)	MIR|SINE|MIR	45322.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94492252-3	chr8	94491822	94492822	+	796.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033207, intron 18 of 48)	intron (NM_001033207, intron 18 of 48)	-12724.0	NR_106040	102466800.0		NR_106040	ENSMUSG00000098511	Mir7072	Gm27665|mmu-mir-7072	microRNA 7072	ncRNA	9.0	17.0	6.0	18.5	4.0	0.0
Merged-chr8-12677716-4	chr8	12677204	12678204	+	796.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5604.0	NM_198031	259279.0	Mm.142095	NM_198031	ENSMUSG00000000759	Tubgcp3	GCP3|Spc98p	tubulin, gamma complex associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109563319-2	chr8	109562819	109563819	+	796.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_151644, intron 1 of 26)	intron (NR_151644, intron 1 of 26)	2542.0	NR_151644	64340.0	Mm.23705	NM_178380	ENSMUSG00000037993	Dhx38	5730550P09Rik|AI325984|AW540902|Ddx38|KIAA0224|Prp16	DEAH (Asp-Glu-Ala-His) box polypeptide 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-112991345-2	chr10	112990845	112991845	+	796.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62319.0	NM_001033474	382423.0	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132	ataxin 7-like 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-56647708-3	chr13	56647203	56648203	+	796.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38117.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0.0	0.0	2.5	0.0	0.0	1.5
Merged-chr8-123342483-3	chr8	123341987	123342987	+	796.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172287, intron 1 of 14)	intron (NM_172287, intron 1 of 14)	9774.0	NM_172287	234857.0	Mm.150200	NM_172287	ENSMUSG00000010154	Spire2	BC026502|Spir-2|Spir2	spire type actin nucleation factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30576286-2	chr14	30575786	30576786	+	796.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	4137.0	NR_037237	100526475.0		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	0.0	0.0	0.5	0.0	0.0	1.0
Merged-chr14-86847549-1	chr14	86847049	86848049	+	796.75	f0_balb.idr	intron (NM_019670, intron 22 of 27)	MLT1B|LTR|ERVL-MaLR	293675.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	6.5	3.0	8.5	4.0	14.0	6.0
Merged-chr12-100527906-2	chr12	100527406	100528406	+	796.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7084.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-117224527-3	chr13	117224033	117225033	+	796.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010330, intron 1 of 8)	intron (NM_010330, intron 1 of 8)	3960.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	1.0	3.5	0.0	0.0	0.0	5.5
Merged-chr15-98935625-2	chr15	98935125	98936125	+	796.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-1235.0	NM_011654	22143.0	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-110875470-2	chr14	110874970	110875970	+	796.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-120321.0	NM_175499	239250.0	Mm.49728	NM_175499	ENSMUSG00000045871	Slitrk6	4832410J21Rik|Sltk6	SLIT and NTRK-like family, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31883787-3	chr16	31883287	31884287	+	796.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013900, exon 4 of 16)	exon (NM_013900, exon 4 of 16)	4977.0	NM_013900	30060.0	Mm.30988	NM_013900	ENSMUSG00000022780	Meltf	CD228|MTf|Mfi2	melanotransferrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-96578779-4	chr13	96578273	96579273	+	796.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023420, intron 3 of 17)	RMER6B|LTR|ERVK	36038.0	NM_023420	68018.0	Mm.24125	NM_023420	ENSMUSG00000021669	Col4a3bp	2810404O15Rik|9230101K08Rik|AU016711|CERT|GPBP	collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-110080927-4	chr6	110080407	110081407	+	796.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-564605.0	NM_001346640	108073.0	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	4.5	4.0	6.0	0.0	4.0	19.0
Merged-chr2-33435955-4	chr2	33435457	33436457	+	796.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4633.0	NM_001276332	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88750713-3	chr15	88750244	88751244	+	796.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181412)	promoter-TSS (NM_181412)	-967.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20204137-3	chr11	20203644	20204644	+	796.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 1 of 5)	intron (NM_008996, intron 1 of 5)	2732.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	19.5	77.0	54.5	28.0	62.5	43.0
Merged-chr14-122010650-3	chr14	122010216	122011216	+	796.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 8 of 8)	intron (NM_026861, intron 8 of 8)	-23958.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	6.5	23.5	2.5	16.0	7.0	16.0
Merged-chr11-109370043-3	chr11	109369555	109370555	+	796.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010303, intron 2 of 3)	intron (NM_010303, intron 2 of 3)	-6401.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167605392-4	chr2	167604889	167605889	+	796.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26616.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94207417-4	chr16	94206917	94207917	+	796.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 6 of 10)	MTB_Mm|LTR|ERVL-MaLR	82874.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39803654-3	chr18	39803153	39804153	+	796.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30156.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35480994-1	chr12	35480494	35481494	+	796.666687	f1_c57bl6.idr	Intergenic	Intergenic	53995.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	3.0	3.5	3.5	1.5	0.0	3.5
Merged-chr4-98924782-2	chr4	98924282	98925282	+	796.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356424, intron 1 of 7)	intron (NM_001356424, intron 1 of 7)	972.0	NM_001356424	230484.0	Mm.371692	NM_146144	ENSMUSG00000028560	Usp1	-	ubiquitin specific peptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70627205-2	chr8	70626672	70627672	+	796.666626	f0_balb.idr|f1_balb.idr	Intergenic	MERVK26-int|LTR|ERVK	4923.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	7.5	34.0	15.0	6.5	40.0	17.0
Merged-chr3-96229014-2	chr3	96228514	96229514	+	796.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	7942.0	NM_178214	319190.0	Mm.439791	NM_178214	ENSMUSG00000068854	Hist2h2be	AV127319|H2b-613|T25626	histone cluster 2, H2be	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103967877-2	chr11	103967377	103968377	+	796.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007477, intron 1 of 4)	intron (NM_007477, intron 1 of 4)	1006.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98834574-6	chr13	98834119	98835119	+	796.638916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19170.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-24990152-4	chr19	24989654	24990654	+	796.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC4|LINE|L1	-9375.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	47.0	80.0	59.5	32.0	67.5	43.0
Merged-chr7-80455882-6	chr7	80455404	80456404	+	796.622192	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042527, intron 21 of 21)	intron (NM_001042527, intron 21 of 21)	-50468.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0.0	4.0	0.5	0.0	0.0	3.0
Merged-chr6-121336781-4	chr6	121336278	121337278	+	796.612488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144512, intron 13 of 14)	intron (NM_144512, intron 13 of 14)	-6298.0	NM_001347433	14411.0	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118892717-3	chr10	118892213	118893213	+	796.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23810.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122576067-2	chr8	122575567	122576567	+	796.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009698, intron 2 of 4)	intron (NM_009698, intron 2 of 4)	840.0	NM_009698	11821.0	Mm.1786	NM_009698	ENSMUSG00000006589	Aprt	C85684	adenine phosphoribosyl transferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-36149544-2	chr8	36149031	36150031	+	796.583374	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-6479.0	NR_151736	330738.0	Mm.128075	NR_151736	ENSMUSG00000109704	Gm38414	A230084N10|Gm45568	predicted gene, 38414	ncRNA	7.0	0.0	7.0	5.0	14.0	18.5
Merged-chr8-25187701-4	chr8	25187245	25188245	+	796.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177089, intron 2 of 12)	intron (NM_177089, intron 2 of 12)	13797.0	NM_199323	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	1.5	0.0	0.0	0.0	2.5	0.0
Merged-chr3-88490845-4	chr3	88490379	88491379	+	796.575012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002011, intron 1 of 11)	intron (NM_001002011, intron 1 of 11)	2433.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92444306-4	chr5	92443774	92444774	+	796.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007644, exon 12 of 12)	exon (NM_007644, exon 12 of 12)	-9075.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81218244-4	chr10	81217761	81218761	+	796.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178662, intron 3 of 12)	ORR1B1|LTR|ERVL-MaLR	12518.0	NM_178662	16467.0	Mm.127681	NM_178662	ENSMUSG00000034958	Atcay	3322401A10Rik|BB077577|BNIP-H|CLAC|hes|ji	ataxia, cerebellar, Cayman type	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58682213-3	chr15	58681715	58682715	+	796.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	141212.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70850460-3	chr14	70849977	70850977	+	796.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2456.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	6.0	21.0	6.5	5.5	3.5	6.5
Merged-chr13-68605806-3	chr13	68605322	68606322	+	796.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027035, intron 1 of 2)	MLT1I|LTR|ERVL-MaLR	8383.0	NM_027035	69315.0	Mm.272795	NM_027035	ENSMUSG00000021534	1700001L19Rik	-	RIKEN cDNA 1700001L19 gene	protein-coding	0.0	1.0	3.5	0.0	0.5	2.5
Merged-chr4-97754389-4	chr4	97753786	97754786	+	796.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-23340.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-103036845-3	chr12	103036346	103037346	+	796.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081017, intron 7 of 48)	L1MEc|LINE|L1	87987.0	NM_001081017	217843.0	Mm.387073	NM_177621	ENSMUSG00000021198	Unc79	9030205A07Rik|Mlca3	unc-79 homolog (C. elegans)	protein-coding	3.0	2.0	1.5	11.5	0.0	1.5
Merged-chr2-155385944-2	chr2	155385467	155386467	+	796.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_178111, exon 3 of 4)	exon (NM_178111, exon 3 of 4)	4111.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	5.5	0.0	2.0	1.5	0.0	1.0
Merged-chr1-43478038-3	chr1	43477522	43478522	+	796.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	32271.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96502443-2	chr3	96501943	96502943	+	796.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22742.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	2.0	13.0	12.5	6.0	7.0	16.5
Merged-chr10-93909214-2	chr10	93908720	93909720	+	796.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-18018.0	NM_019648	56307.0	Mm.289329	NM_019648	ENSMUSG00000036112	Metap2	4930584B20Rik|A930035J23Rik|AI047573|AL024412|AU014659|Amp2|Mnpep|p67|p67eIF2	methionine aminopeptidase 2	protein-coding	9.5	3.5	2.0	0.0	3.0	4.5
Merged-chr9-119091954-2	chr9	119091454	119092454	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019676, intron 1 of 14)	intron (NM_019676, intron 1 of 14)	1548.0	NR_121571	18799.0	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34985765-2	chr19	34985265	34986265	+	796.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20369.0	NR_035473	100316775.0		NR_035473	ENSMUSG00000089151	Mir1950	mmu-mir-1950	microRNA 1950	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-114622726-4	chr2	114622226	114623226	+	796.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025675, intron 3 of 8)	intron (NM_025675, intron 3 of 8)	32238.0	NM_001356438	66632.0	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61571572-2	chr14	61571072	61572072	+	796.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14686.0	NM_001310603	66674.0	Mm.282706	NM_025697	ENSMUSG00000021930	Spryd7	6330409N04Rik|Clld6	SPRY domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83131586-2	chr15	83131086	83132086	+	796.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_178627, exon 7 of 9)	exon (NM_178627, exon 7 of 9)	-8785.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46451451-2	chr18	46450951	46451951	+	796.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	14365.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	5.5	15.5	3.5	4.5	13.0	3.5
Merged-chr10-117831854-2	chr10	117831354	117832354	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	14120.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83160708-2	chr15	83160208	83161208	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029787, intron 5 of 8)	intron (NM_029787, intron 5 of 8)	11063.0	NR_004432	104307.0	Mm.471434	NR_004432	ENSMUSG00000065176	Rnu12	-	RNA U12, small nuclear	snRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109550777-1	chr4	109550277	109551277	+	796.5	f0_balb.idr	Intergenic	Intergenic	-19480.0	NM_026291	67646.0	Mm.45820	NM_026291	ENSMUSG00000060491	4930522H14Rik	1700007J23Rik	RIKEN cDNA 4930522H14 gene	protein-coding	0.5	0.5	0.0	0.5	0.0	0.0
Merged-chr10-39410342-2	chr10	39409842	39410842	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	RMER1B|Other|Other	40543.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-24514453-2	chr9	24513953	24514953	+	796.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11313.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117868406-2	chr11	117867906	117868906	+	796.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027919, exon 7 of 7)	3' UTR (NM_027919, exon 7 of 7)	5120.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-52507107-2	chr15	52506607	52507607	+	796.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-205338.0	NM_027212	69790.0	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40298346-2	chr10	40297846	40298846	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009665, intron 1 of 7)	B1F2|SINE|Alu	3840.0	NM_007444	100041585.0	Mm.476925	NM_007444	ENSMUSG00000063953	Amd2	AdoMetDC|Amd1|Amd3	S-adenosylmethionine decarboxylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53516452-1	chr19	53515952	53516952	+	796.5	f0_balb.idr	Intergenic	Intergenic	-12866.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87795096-2	chr3	87794596	87795596	+	796.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033124)	promoter-TSS (NM_001033124)	66.0	NM_001033124	18211.0	Mm.80682	NM_001033124	ENSMUSG00000028072	Ntrk1	C80751|Tkr|TrkA|trk	neurotrophic tyrosine kinase, receptor, type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58034713-4	chr13	58034206	58035206	+	796.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195075, intron 8 of 16)	intron (NM_001195075, intron 8 of 16)	-11506.0	NR_030544	100124491.0		NR_030544	ENSMUSG00000077962	Mir874	Mirn874|mir-874|mmu-mir-874	microRNA 874	ncRNA	1.5	3.0	4.5	1.5	0.5	4.5
Merged-chr1-155974195-2	chr1	155973695	155974695	+	796.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039184)	promoter-TSS (NM_001039184)	-940.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	38.0	108.5	89.5	48.5	110.0	61.5
Merged-chr11-106145674-2	chr11	106145174	106146174	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 7 of 15)	intron (NM_011947, intron 7 of 15)	14253.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83168175-2	chr8	83167677	83168677	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111304, intron 1 of 20)	intron (NM_001111304, intron 1 of 20)	2825.0	NM_027758	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	32.0	72.0	46.0	25.5	55.0	12.5
Merged-chr11-69320722-2	chr11	69320222	69321222	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172560, intron 4 of 18)	intron (NM_172560, intron 4 of 18)	3151.0	NM_172560	216846.0	Mm.28774	NM_172560	ENSMUSG00000032782	Cntrob	9830165K03Rik|Lip8|Nip2	centrobin, centrosomal BRCA2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53157389-2	chr19	53156889	53157889	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013758, intron 1 of 15)	intron (NM_013758, intron 1 of 15)	13392.0	NM_013758	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21557571-2	chr9	21557071	21558071	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153141, intron 1 of 14)	intron (NM_153141, intron 1 of 14)	10677.0	NM_153141	59035.0	Mm.178115	NM_021531	ENSMUSG00000032185	Carm1	Prmt4	coactivator-associated arginine methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-86822617-2	chr18	86822117	86823117	+	796.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	110306.0	NM_001361145	12405.0	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20534904-2	chr10	20534404	20535404	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 2 of 12)	B4|SINE|B4	13424.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139301256-2	chr5	139300756	139301756	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 3 of 10)	(CCCTG)n|Simple_repeat|Simple_repeat	24208.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6591907-2	chr2	6591407	6592407	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 10 of 15)	intron (NM_001110232, intron 10 of 15)	129755.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79752619-2	chr15	79752138	79753138	+	796.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045069, exon 4 of 4)	non-coding (NR_045069, exon 4 of 4)	9940.0	NR_045069	100504191.0	Mm.421420	NR_045069	ENSMUSG00000087543	Gm16576	-	predicted gene 16576	ncRNA	19.5	13.0	13.0	7.0	28.5	12.0
Merged-chr15-64101239-2	chr15	64100739	64101739	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 25 of 28)	intron (NM_001276461, intron 25 of 28)	-40791.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	17.0	9.5	19.5	10.0	40.5	25.5
Merged-chr5-32138012-2	chr5	32137512	32138512	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008037, intron 1 of 3)	intron (NM_008037, intron 1 of 3)	1540.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-43867604-2	chr2	43867104	43868104	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 5 of 14)	intron (NM_001301831, intron 5 of 14)	118780.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-94157127-2	chr2	94156627	94157627	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019657, intron 1 of 10)	intron (NM_019657, intron 1 of 10)	782.0	NM_019657	56348.0	Mm.22505	NM_019657	ENSMUSG00000027195	Hsd17b12	2610510O05Rik|AI172963|KIK-I|Kik1	hydroxysteroid (17-beta) dehydrogenase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55070187-2	chr13	55069687	55070687	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293660, intron 4 of 12)	RSINE1|SINE|B4	24219.0	NM_001359757	20184.0	Mm.259301	NM_011307	ENSMUSG00000025878	Uimc1	9430016E08Rik|D330018D10Rik|D630032M02Rik|RIP110|Rxrip110	ubiquitin interaction motif containing 1	protein-coding	0.0	2.5	0.5	6.5	1.5	7.5
Merged-chr7-131555995-2	chr7	131555495	131556495	+	796.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145998, exon 2 of 2)	3' UTR (NM_145998, exon 2 of 2)	1933.0	NM_145998	15372.0	Mm.303357	NM_145998	ENSMUSG00000050100	Hmx2	Nkx-5.2|Nkx5-2	H6 homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99181095-3	chr10	99180558	99181558	+	796.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	72923.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70119789-4	chr12	70119304	70120304	+	796.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A2|LTR|ERVL	-7769.0	NR_104397	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	1.5	2.0	0.5	0.0	1.0	1.5
Merged-chr5-29895120-4	chr5	29894627	29895627	+	796.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117987.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110787464-3	chr7	110786952	110787952	+	796.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009667, intron 2 of 14)	ORR1D1|LTR|ERVL-MaLR	14848.0	NM_009667	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83743086-4	chr8	83742587	83743587	+	796.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-1776.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	159.5	322.5	233.5	132.5	305.5	191.0
Merged-chr1-74763255-4	chr1	74762776	74763776	+	796.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8616.0	NM_009526	22420.0	Mm.268282	NM_009526	ENSMUSG00000033227	Wnt6	AA409270|Wnt-6	wingless-type MMTV integration site family, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102707522-3	chr2	102707025	102708025	+	796.4111330000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077515, intron 1 of 10)	intron (NM_001077515, intron 1 of 10)	1087.0	NM_001077515	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	7.0	6.0	6.5	1.5	21.5	8.0
Merged-chr6-135177478-4	chr6	135176915	135177915	+	796.408325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G|LTR|ERVL-MaLR	-9200.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	0.0	0.0	1.5	0.0	2.0	0.0
Merged-chr16-90885965-3	chr16	90885478	90886478	+	796.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027627, intron 4 of 6)	intron (NM_027627, intron 4 of 6)	48871.0	NM_026502	68001.0	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-87275088-4	chr12	87274585	87275585	+	796.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8357.0	NM_146036	217737.0	Mm.22626	NM_146036	ENSMUSG00000021037	Ahsa1	BC023857|p38	AHA1, activator of heat shock protein ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90567088-2	chr2	90566588	90567588	+	796.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	13559.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	1.0	13.5	6.5	4.5	17.0	9.5
Merged-chr15-39198213-5	chr15	39197757	39198757	+	796.366638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256382)	promoter-TSS (NM_001256382)	-29.0	NM_001256382	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32650960-3	chr9	32650445	32651445	+	796.355591	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45097.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130841139-4	chr4	130840581	130841581	+	796.354187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48544.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-113494887-2	chr2	113494387	113495387	+	796.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 3 of 16)	intron (NM_001285459, intron 3 of 16)	53823.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	3.0	18.5	8.0	3.0	28.5	5.5
Merged-chr18-77761185-2	chr18	77760685	77761685	+	796.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357531, intron 6 of 10)	intron (NM_001357531, intron 6 of 10)	6614.0	NM_146089	225745.0	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110888743-2	chr9	110888247	110889247	+	796.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_146228, exon 10 of 27)	exon (NM_146228, exon 10 of 27)	8425.0	NM_001146060	235633.0	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	7.5	15.0	17.0	3.0	12.0	24.0
Merged-chr4-139229405-3	chr4	139228893	139229893	+	796.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	35282.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	17.0	49.5	48.0	43.5	49.5	31.0
Merged-chr10-117375315-4	chr10	117374808	117375808	+	796.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013391, intron 1 of 9)	intron (NM_001013391, intron 1 of 9)	1665.0	NM_001013391	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	35.0	65.5	58.0	30.0	54.0	55.0
Merged-chr19-41514228-3	chr19	41513727	41514727	+	796.311096	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-11025.0	NM_001326287	627352.0	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29707750-7	chr11	29707261	29708261	+	796.3095089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_194051, exon 3 of 9)	exon (NM_194051, exon 3 of 9)	-10802.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	9.0	12.5	14.5	14.5	8.0	11.5
Merged-chr18-58615376-4	chr18	58614819	58615819	+	796.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44163.0	NM_025478	66307.0	Mm.182574	NM_025478	ENSMUSG00000024601	Isoc1	2610034N03Rik	isochorismatase domain containing 1	protein-coding	0.0	3.0	0.5	0.0	2.5	0.0
Merged-chr7-134669047-4	chr7	134668471	134669471	+	796.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-1716.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95798849-3	chr15	95798369	95799369	+	796.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	8026.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-118479395-5	chr6	118478844	118479844	+	796.26001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011763)	promoter-TSS (NM_011763)	-71.0	NM_011763	22750.0	Mm.106970	NM_011763	ENSMUSG00000072623	Zfp9	1810048F22Rik|AU016736|Krox-4|Zfp-9|mszf79-2	zinc finger protein 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118511967-2	chr2	118511398	118512398	+	796.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32202.0	NM_009273	20813.0	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	0.0	0.0	2.0	0.0	0.0	1.0
Merged-chr9-66916053-2	chr9	66915553	66916553	+	796.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	3652.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-35862440-2	chr1	35861940	35862940	+	796.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-205960.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54806192-2	chr12	54805692	54806692	+	796.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10530.0	NM_026998	72183.0	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132008753-2	chr1	132008253	132009253	+	796.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007923, intron 1 of 4)	intron (NM_007923, intron 1 of 4)	1148.0	NM_007923	13714.0	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69092506-4	chr11	69092004	69093004	+	796.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009497)	TTS (NM_009497)	3976.0	NM_009497	22318.0	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|Vamp-2|sybII	vesicle-associated membrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145779545-3	chr6	145779041	145780041	+	796.25	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28842.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	14.0	25.5	9.0	3.0	4.5	14.0
Merged-chr9-116133068-2	chr9	116132568	116133568	+	796.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	42295.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.0	15.0	0.5	1.0	14.0	2.0
Merged-chr1-93012803-2	chr1	93012303	93013303	+	796.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177587)	TTS (NM_177587)	6469.0	NM_177587	208760.0	Mm.235537	NM_177587	ENSMUSG00000045091	Aqp12	AB084104|mAQP12	aquaporin 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135468019-2	chr5	135467519	135468519	+	796.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	-73473.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-85068373-2	chr16	85067839	85068839	+	796.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 5 of 15)	Lx5|LINE|L1	96128.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	3.5	0.0	2.5	0.0	1.5	0.0
Merged-chr1-174032855-2	chr1	174032355	174033355	+	796.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-1100.0	NM_172648	226695.0	Mm.425061	NM_172648	ENSMUSG00000054203	Ifi205	D3|D3cDNA|Ifi205a	interferon activated gene 205	protein-coding	2.0	15.0	10.5	10.0	17.0	9.0
Merged-chr1-36075487-2	chr1	36074987	36075987	+	796.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	7087.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116811410-2	chr11	116810891	116811891	+	796.25	f0_balb.idr|f0_c57.idr	intron (NM_001347633, intron 3 of 4)	(CAGAG)n|Simple_repeat|Simple_repeat	16655.0	NM_026280	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-105306196-3	chr13	105305704	105306704	+	796.244446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11719.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-133481159-3	chr2	133480659	133481659	+	796.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71000.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111662636-3	chr8	111662145	111663145	+	796.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011742, intron 2 of 3)	MERVL_2A-int|LTR|ERVL	19202.0	NM_011742	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	4.0	3.0	0.0	0.0	0.0	0.0
Merged-chr5-137095375-4	chr5	137094880	137095880	+	796.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	20827.0	NM_201373	384309.0	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-60947730-3	chr19	60947231	60948231	+	796.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 1 of 15)	ORR1B2|LTR|ERVL-MaLR	57982.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	39.0	58.0	65.5	27.0	42.0	24.5
Merged-chr15-59719120-2	chr15	59718620	59719620	+	796.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70466.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167942475-3	chr2	167942005	167943005	+	796.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	10178.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23790599-3	chr17	23790095	23791095	+	796.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4379.0	NM_001357140	76917.0	Mm.269613	NM_029798	ENSMUSG00000023911	Flywch2	2810417J12Rik|3010014L17Rik|AW548203	FLYWCH family member 2	protein-coding	43.5	35.5	53.0	6.5	27.0	36.5
Merged-chr14-20394721-2	chr14	20394221	20395221	+	796.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_029698, intron 27 of 28)	intron (NM_029698, intron 27 of 28)	-1087.0	NM_025440	66242.0	Mm.23747	NM_025440	ENSMUSG00000049960	Mrps16	1500011E11Rik|Mprs16|S16mt	mitochondrial ribosomal protein S16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-56183115-2	chr3	56182615	56183615	+	796.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_030595, exon 1 of 58)	exon (NM_030595, exon 1 of 58)	586.0	NM_030595	26422.0	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91390281-2	chr16	91389781	91390781	+	796.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 5 of 7)	B3A|SINE|B2	-15954.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-30215097-2	chr17	30214597	30215597	+	796.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027060)	TTS (NM_027060)	181083.0	NR_030688	623169.0	Mm.440508	NR_030688		Gm6402	EG623169	ribosomal protein S17 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71404351-2	chr8	71403872	71404872	+	796.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_026636, exon 9 of 9)	exon (NM_026636, exon 9 of 9)	-1640.0	NM_001310502	234396.0	Mm.216549	NM_172756	ENSMUSG00000046295	Ankle1	8430438L13Rik|Ankrd41|C430003I23|Lem3	ankyrin repeat and LEM domain containing 1	protein-coding	72.0	21.5	51.5	24.0	20.5	30.0
Merged-chr8-33607766-5	chr8	33607267	33608267	+	796.159973	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017374, intron 1 of 6)	B1F1|SINE|Alu	8146.0	NM_017374	19053.0	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	34.5	118.0	89.5	18.0	81.5	47.0
Merged-chr10-60741699-3	chr10	60741199	60742199	+	796.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 2 of 5)	intron (NM_023596, intron 2 of 5)	11083.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53806616-3	chr4	53806116	53807116	+	796.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY3-int|LTR|ERVK	-19429.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27689125-3	chr2	27688730	27689730	+	796.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	12029.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-23415963-4	chr5	23415478	23416478	+	796.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18375.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	9.0	13.0	4.5	8.0	9.0	2.0
Merged-chr2-164360447-4	chr2	164359947	164360947	+	796.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3940.0	NM_011414	20568.0	Mm.371583	NM_011414	ENSMUSG00000017002	Slpi	ALP	secretory leukocyte peptidase inhibitor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35808363-4	chr8	35807881	35808881	+	796.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	18178.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	0.0	1.0	3.5	4.5	9.0	5.0
Merged-chr12-5226976-3	chr12	5226487	5227487	+	796.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164493, intron 2 of 13)	intron (NM_001164493, intron 2 of 13)	148695.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59079146-3	chr15	59078652	59079652	+	796.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 1 of 14)	intron (NM_144800, intron 1 of 14)	2874.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121803071-3	chr11	121802572	121803572	+	796.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27146.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-49381207-4	chr2	49380717	49381717	+	796.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70269.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15813910-4	chr17	15813422	15814422	+	796.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178615, intron 2 of 2)	intron (NM_178615, intron 2 of 2)	12664.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155757490-2	chr2	155757020	155758020	+	796.083374	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	6303.0	NM_011171	19124.0	Mm.3243	NM_011171	ENSMUSG00000027611	Procr	AI325044|Ccca|Ccd41|Epcr	protein C receptor, endothelial	protein-coding	17.5	35.5	20.0	0.0	0.5	2.0
Merged-chr4-43285678-2	chr4	43285224	43286224	+	796.083374	f0_balb.idr|f1_balb.idr	intron (NM_177195, intron 2 of 28)	Lx2B|LINE|L1	18565.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	0.0	0.0	0.0	2.5	5.5	6.5
Merged-chr7-104219372-4	chr7	104218840	104219840	+	796.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013616, intron 1 of 7)	intron (NM_001013616, intron 1 of 7)	545.0	NM_001013616	94088.0	Mm.274843	NM_001013616	ENSMUSG00000072244	Trim6	C430046K18Rik|D7Ertd684e	tripartite motif-containing 6	protein-coding	3.0	3.0	2.0	0.0	6.0	0.5
Merged-chr19-29372029-3	chr19	29371598	29372598	+	796.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 1 of 6)	intron (NM_021893, intron 1 of 6)	4660.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40217986-4	chr4	40217482	40218482	+	796.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172689, intron 10 of 17)	B2_Mm1a|SINE|B2	21843.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38321583-4	chr16	38321090	38322090	+	796.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081025, intron 8 of 16)	intron (NM_001081025, intron 8 of 16)	20270.0	NM_001081025	320214.0	Mm.294342	NM_177104	ENSMUSG00000022805	Maats1	4932425I24Rik|Aat1|CFAP91|Spata26	MYCBP-associated, testis expressed 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-99116085-4	chr4	99115603	99116603	+	796.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026082, intron 1 of 47)	intron (NM_026082, intron 1 of 47)	4812.0	NM_001290636	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	0.0	7.5	0.0	1.0	0.0	3.5
Merged-chr11-103310098-4	chr11	103309590	103310590	+	796.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34612.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	67.0	103.5	111.5	67.0	152.5	98.5
Merged-chr3-101295699-2	chr3	101295199	101296199	+	796.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7760.0	NM_013486	12481.0	Mm.22842	NM_013486	ENSMUSG00000027863	Cd2	LFA-2|Ly-37|Ly37	CD2 antigen	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr1-191999287-2	chr1	191998787	191999787	+	796.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_039566)	promoter-TSS (NR_039566)	-653.0	NR_039566	100628582.0		NR_039566	ENSMUSG00000093003	Mir3473c	mmu-mir-3473c	microRNA 3473c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-103302840-4	chr9	103302345	103303345	+	796.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-2482.0	NM_176979	235559.0	Mm.259893	NM_176979	ENSMUSG00000032555	Topbp1	1110031N14Rik|2810429C13Rik|AI256758|D430026L04Rik|mKIAA0259	topoisomerase (DNA) II binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108344956-2	chr9	108344458	108345458	+	796.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-2873.0	NM_001311157	22258.0	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-79550693-2	chr14	79550193	79551193	+	796.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 2 of 8)	ORR1C2|LTR|ERVL-MaLR	35019.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30185057-3	chr16	30184560	30185560	+	796.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82472.0	NM_027904	71756.0	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139783119-2	chr5	139782619	139783619	+	796.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7441.0	NM_026748	68510.0	Mm.292942	NM_026748	ENSMUSG00000029547	Ints1	1110015K06Rik	integrator complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50285987-2	chr11	50285487	50286487	+	796.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 1 of 4)	intron (NM_175334, intron 1 of 4)	6349.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76868868-1	chr15	76868368	76869368	+	796.0	f0_balb.idr	intron (NM_001007568, intron 3 of 3)	intron (NM_001007568, intron 3 of 3)	2567.0	NM_001007568	71591.0	Mm.38195	NM_001007568	ENSMUSG00000022526	Zfp251	9130001M19Rik|AV339307	zinc finger protein 251	protein-coding	2.0	0.5	3.0	1.5	5.5	0.5
Merged-chr19-6258841-2	chr19	6258341	6259341	+	796.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194348, intron 36 of 39)	intron (NM_194348, intron 36 of 39)	-5802.0	NR_029830	723957.0		NR_029830	ENSMUSG00000065582	Mir194-2	Mirn194-2|mir-194-2	microRNA 194-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-33676-1	chr4	33176	34176	+	796.0	f1_c57bl6.idr	Intergenic	Intergenic	-3138407.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55848334-2	chr19	55847834	55848834	+	796.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-46987.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133210542-2	chr4	133210042	133211042	+	796.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008154, exon 2 of 2)	exon (NM_008154, exon 2 of 2)	1994.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	4.5	0.0	2.0	12.0	0.0	0.0
Merged-chr7-145109642-1	chr7	145109142	145110142	+	796.0	f1_c57bl6.idr	Intergenic	Intergenic	98477.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	8.5	6.5	9.5	1.5	9.5	5.0
Merged-chr6-44588145-2	chr6	44587645	44588645	+	796.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-471916.0	NM_001004357	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-74952912-2	chr5	74952412	74953412	+	796.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045866, intron 1 of 4)	intron (NR_045866, intron 1 of 4)	3718.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36130039-3	chr1	36129498	36130498	+	796.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	14315.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116163752-1	chr3	116163252	116164252	+	796.0	f0_balb.idr	Intergenic	Intergenic	-34064.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	5.5	10.0	1.0	0.0	0.0	0.0
Merged-chr8-84966752-2	chr8	84966246	84967246	+	796.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027187)	promoter-TSS (NM_027187)	-735.0	NM_027187	69724.0	Mm.182470	NM_027187	ENSMUSG00000052926	Rnaseh2a	2400006P09Rik|RNASEHI|RNHIA|RNHL	ribonuclease H2, large subunit	protein-coding	15.5	26.5	25.5	6.5	10.0	24.0
Merged-chr7-28359975-2	chr7	28359475	28360475	+	796.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001083912, exon 19 of 19)	exon (NM_001083912, exon 19 of 19)	8435.0	NR_028129	100302567.0		NR_028129		AF357399	MBI-142	snoRNA AF357399	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107711212-2	chr9	107710712	107711712	+	796.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011349)	promoter-TSS (NM_011349)	-737.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69022958-2	chr8	69022499	69023499	+	796.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A|LTR|ERVK	-65737.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	6.5	10.0	18.0	1.0	10.0	1.5
Merged-chr13-38950694-2	chr13	38950194	38951194	+	796.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170430, intron 3 of 9)	L1M2|LINE|L1	9843.0	NM_001170430	108652.0	Mm.255506	NM_134060	ENSMUSG00000021432	Slc35b3	4921526O06Rik|AI428480|CGI-19|PABST2|PAPST2	solute carrier family 35, member B3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83297567-3	chr17	83297090	83298090	+	796.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-53341.0	NM_001114361	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69367737-2	chr12	69367237	69368237	+	796.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4413.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145328951-1	chr6	145328451	145329451	+	796.0	f1_balb.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-58674.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	5.0	3.5	1.5	5.0	13.0	3.0
Merged-chr1-183369035-2	chr1	183368544	183369544	+	796.0	f0_balb.idr|f1_balb.idr	intron (NM_177389, intron 1 of 26)	CpG	521.0	NM_177389	338366.0	Mm.41152	NM_177389		Mia3	9130229H14Rik|A930039G15Rik|AU022327|B230399H06Rik|C80126|Gm1525|TANGO1|Tango	melanoma inhibitory activity 3	protein-coding	1.5	8.0	5.5	2.0	8.0	2.0
Merged-chr13-67060350-4	chr13	67059856	67060856	+	796.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166218, intron 1 of 3)	Lx8|LINE|L1	814.0	NM_001166218	78251.0	Mm.297247	NM_001166218	ENSMUSG00000090641	Zfp712	4921504N20Rik|mszf31|mszf89	zinc finger protein 712	protein-coding	4.5	9.0	5.0	4.0	7.5	4.5
Merged-chr18-12232752-2	chr18	12232229	12233229	+	796.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_008720, intron 1 of 24)	RMER1C|Other|Other	3657.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	2.0	11.5	17.5	5.0	17.0	10.5
Merged-chr1-54870806-2	chr1	54870317	54871317	+	796.0	f0_balb.idr|f1_balb.idr	intron (NM_001081433, intron 1 of 27)	ORR1E|LTR|ERVL-MaLR	55570.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	3.5	2.5	3.5	12.5	3.0	4.5
Merged-chr4-62863015-1	chr4	62862515	62863515	+	796.0	f1_c57bl6.idr	Intergenic	Intergenic	-102559.0	NM_028326	72701.0	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr9-108338180-3	chr9	108337665	108338665	+	796.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001329528)	promoter-TSS (NM_001329528)	-915.0	NM_001329528	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46493997-2	chr18	46493457	46494457	+	796.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28141.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	2.5	1.5	2.0	3.0	1.5	2.0
Merged-chr8-86843891-2	chr8	86843391	86844391	+	796.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_030563, exon 7 of 7)	3' UTR (NM_030563, exon 7 of 7)	41367.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55003156-2	chr13	55002656	55003656	+	796.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153131, intron 11 of 15)	intron (NM_153131, intron 11 of 15)	17663.0	NM_001206390	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53210875-1	chr4	53210375	53211375	+	796.0	f0_balb.idr	Intergenic	Intergenic	-35321.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83669119-2	chr8	83668619	83669619	+	796.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177262)	TTS (NM_177262)	2475.0	NM_013641	19216.0	Mm.213000	NM_013641	ENSMUSG00000019464	Ptger1	EP1|Ptgerep1	prostaglandin E receptor 1 (subtype EP1)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-45897307-2	chr1	45896807	45897807	+	796.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31D_MM|LTR|ERVK	28287.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73930153-2	chr17	73929653	73930653	+	796.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 6 of 35)	L1_Mus3|LINE|L1	20043.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45220692-2	chr19	45220197	45221197	+	796.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14539.0	NM_010691	16814.0	Mm.116815	NM_010691	ENSMUSG00000025216	Lbx1	Lbx1h	ladybird homeobox 1	protein-coding	13.0	0.0	1.0	0.0	1.5	0.0
Merged-chr9-106202590-2	chr9	106202114	106203114	+	796.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011876)	promoter-TSS (NM_011876)	-494.0	NM_011876	23999.0	Mm.274346	NM_011876	ENSMUSG00000023277	Twf2	A6-related|AU014993|Ptk9l|Ptk9r	twinfilin actin binding protein 2	protein-coding	15.5	26.5	30.0	14.0	23.0	21.5
Merged-chr15-66991867-1	chr15	66991367	66992367	+	796.0	f1_c57bl6.idr	Intergenic	LTR33A|LTR|ERVL	-22226.0	NM_008681	17988.0	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	2.5	4.0	1.0	14.0	0.0	6.0
Merged-chr9-21153328-2	chr9	21152828	21153828	+	796.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3422.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-25500725-2	chr5	25500225	25501225	+	796.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030700, exon 1 of 1)	non-coding (NR_030700, exon 1 of 1)	928.0	NR_030700	320965.0	Mm.32025	NR_030700		4831440E17Rik	-	RIKEN cDNA 4831440E17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84187369-2	chr8	84186918	84187918	+	796.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8457.0	NR_029821	723819.0		NR_029821	ENSMUSG00000065483	Mir181c	Mirn181c|mir-181c	microRNA 181c	ncRNA	49.5	60.0	52.0	10.0	67.0	34.5
Merged-chr19-4094748-2	chr19	4094248	4095248	+	796.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2603.0	NM_026373	52004.0	Mm.29609	NM_026373	ENSMUSG00000024856	Cdk2ap2	5830466O21Rik|D19Ertd144e|Doc-1r	CDK2-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5879206-2	chr19	5878706	5879706	+	796.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134154, intron 1 of 5)	intron (NM_134154, intron 1 of 5)	1384.0	NM_001361974	107375.0	Mm.5323	NM_134154	ENSMUSG00000024818	Slc25a45	AW491445	solute carrier family 25, member 45	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102026490-2	chr7	102025988	102026988	+	796.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 6 of 8)	intron (NM_029211, intron 6 of 8)	-8333.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	42.5	91.0	75.0	48.5	91.5	80.5
Merged-chr18-60851111-2	chr18	60850611	60851611	+	796.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2147.0	NM_001198984	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30693029-2	chr2	30692529	30693529	+	796.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15018.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29906925-1	chr7	29906425	29907425	+	796.0	f1_c57bl6.idr	promoter-TSS (NM_001285798)	promoter-TSS (NM_001285798)	-393.0	NM_001285798	22689.0	Mm.86747	NM_011754	ENSMUSG00000062040	Zfp27	Zfp-27|mkr-4|mszf76	zinc finger protein 27	protein-coding	41.5	153.0	114.5	22.0	104.0	82.0
Merged-chr9-37468418-1	chr9	37467918	37468918	+	796.0	f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-20903.0	NM_146222	235184.0	Mm.127892	NM_146222	ENSMUSG00000042138	Msantd2	2810450G17Rik|9530092B10Rik	Myb/SANT-like DNA-binding domain containing 2	protein-coding	0.0	39.0	8.0	0.0	6.0	2.5
Merged-chr14-33215061-4	chr14	33214571	33215571	+	796.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1752.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56754781-4	chr17	56754300	56755300	+	795.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008738, intron 1 of 2)	intron (NM_008738, intron 1 of 2)	2748.0	NM_008738	18188.0	Mm.8074	NM_008738	ENSMUSG00000039481	Nrtn	NTN	neurturin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-10087676-3	chr3	10087207	10088207	+	795.955566	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045710)	promoter-TSS (NR_045710)	-570.0	NR_045710	100041480.0	Mm.455632	NR_045710	ENSMUSG00000049230	Gm9833	-	myelin basic protein expression factor 2, repressor pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26499173-3	chr17	26498634	26499634	+	795.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	9338.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	1.0	7.0	10.5	1.0	7.0	9.5
Merged-chr10-118643731-2	chr10	118643231	118644231	+	795.916687	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-87206.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123371779-2	chr5	123371279	123372279	+	795.916687	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029850, exon 6 of 6)	3' UTR (NM_029850, exon 6 of 6)	-23019.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36550329-3	chr5	36549761	36550761	+	795.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	-19638.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	85.0	124.0	77.0	40.5	151.5	129.5
Merged-chr4-36285424-3	chr4	36284923	36285923	+	795.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165999, intron 3 of 7)	intron (NM_001165999, intron 3 of 7)	360030.0	NR_030545	100124458.0		NR_030545	ENSMUSG00000077851	Mir876	Mirn876|mir-876|mmu-mir-876	microRNA 876	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124442513-6	chr5	124441829	124442829	+	795.886108	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310725, intron 1 of 6)	intron (NM_001310725, intron 1 of 6)	2399.0	NM_001310725	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94618698-4	chr16	94618185	94619185	+	795.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	RSINE1|SINE|B4	7266.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-123240231-4	chr7	123239703	123240703	+	795.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146198, intron 5 of 16)	intron (NM_146198, intron 5 of 16)	25337.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-28065679-4	chr5	28065144	28066144	+	795.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-5768.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	1.0	0.0	1.0	6.5	4.5	1.0
Merged-chr15-84105527-3	chr15	84105113	84106113	+	795.861145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013873, exon 1 of 7)	5' UTR (NM_013873, exon 1 of 7)	141.0	NM_013873	29859.0	Mm.248796	NM_013873	ENSMUSG00000018865	Sult4a1	2400007A17Rik|AI853543|BR-STL|BR-STL-1|NST|ST4A1|Sultx3|mBR-STL	sulfotransferase family 4A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103006547-2	chr11	103006047	103007047	+	795.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026551, intron 1 of 4)	intron (NM_026551, intron 1 of 4)	-6626.0	NR_105896	102466988.0		NR_105896	ENSMUSG00000098613	Mir6931	Gm27303|mmu-mir-6931	microRNA 6931	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26698903-2	chr17	26698403	26699403	+	795.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025272, intron 3 of 3)	intron (NM_025272, intron 3 of 3)	-16747.0	NM_029870	77128.0	Mm.275414	NM_029870	ENSMUSG00000048249	Crebrf	A930001N09Rik|LRF	CREB3 regulatory factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130789017-2	chr4	130788517	130789517	+	795.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3520.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-88234210-4	chr11	88233713	88234713	+	795.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29825.0	NM_001291271	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	4.5	43.0	31.0	0.0	4.0	0.0
Merged-chr8-121925760-3	chr8	121925275	121926275	+	795.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007608, intron 3 of 6)	intron (NM_007608, intron 3 of 6)	17942.0	NM_001033485	407789.0	Mm.436576	NM_001033485		BC048644	-	cDNA sequence BC048644	protein-coding	3.5	2.0	8.0	2.5	2.5	4.5
Merged-chr4-149415978-3	chr4	149415475	149416475	+	795.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022022, intron 1 of 26)	intron (NM_022022, intron 1 of 26)	10656.0	NM_022022	63958.0	Mm.415260	NM_022022	ENSMUSG00000028960	Ube4b	4930551I19Rik|4933406G05Rik|AU014668|D4Bwg0973e|UFD2|UFD2a|Ufd2p|mKIAA0684	ubiquitination factor E4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-68801618-3	chr18	68801126	68802126	+	795.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62226.0	NR_105774	102465183.0		NR_105774	ENSMUSG00000099300	Mir6356	Gm27461|mmu-mir-6356	microRNA 6356	ncRNA	4.0	11.5	5.0	0.0	5.5	8.5
Merged-chr3-98019485-4	chr3	98018990	98019990	+	795.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	5952.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89396519-3	chr3	89396024	89397024	+	795.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040404, intron 1 of 1)	intron (NR_040404, intron 1 of 1)	2234.0	NR_040404	545539.0	Mm.393389	NR_040403	ENSMUSG00000074466	Gm15417	-	predicted gene 15417	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54489852-4	chr12	54489377	54490377	+	795.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98559.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61760730-4	chr11	61760271	61761271	+	795.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144806, intron 1 of 11)	B3|SINE|B2	1317.0	NM_144806	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32852190-3	chr5	32851676	32852676	+	795.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194340, intron 1 of 10)	B1F1|SINE|Alu	2054.0	NM_194340	215476.0	Mm.248721	NM_194340	ENSMUSG00000054280	Prr14l	6030436E02Rik|C330019G07Rik|Prl14l	proline rich 14-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-123122718-3	chr6	123122226	123123226	+	795.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011999)	promoter-TSS (NM_011999)	36.0	NM_001170332	26888.0	Mm.47384	NM_011999	ENSMUSG00000030148	Clec4a2	Clec4a|Clecsf6|DCIR|Dcir1	C-type lectin domain family 4, member a2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46553774-3	chr19	46553266	46554266	+	795.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355233, intron 2 of 6)	intron (NM_001355233, intron 2 of 6)	19416.0	NM_001355233	56350.0	Mm.22085	NM_019718	ENSMUSG00000025035	Arl3	-	ADP-ribosylation factor-like 3	protein-coding	0.0	17.5	9.5	19.0	8.0	5.0
Merged-chr1-10267020-3	chr1	10266532	10267532	+	795.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-34362.0	NM_001102430	211673.0	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-17847109-4	chr5	17846599	17847599	+	795.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	2693.0	NM_001159557	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91866016-4	chr16	91865466	91866466	+	795.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 26 of 28)	intron (NM_001110275, intron 26 of 28)	65664.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32547762-1	chr16	32547262	32548262	+	795.75	f0_balb.idr	Intergenic	Intergenic	51481.0	NM_199309	245308.0	Mm.76859	NM_199309	ENSMUSG00000052363	Zdhhc19	Gm1744|Gm616	zinc finger, DHHC domain containing 19	protein-coding	18.5	2.0	5.5	0.0	14.0	7.0
Merged-chr11-5474433-2	chr11	5473933	5474933	+	795.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29586.0	NM_001080924	407821.0	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	8.5	4.0	1.0	2.5	1.0	0.0
Merged-chr13-4934831-4	chr13	4934334	4935334	+	795.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-325670.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	0.0	4.0	10.0	7.5	2.0	5.0
Merged-chr2-126594163-4	chr2	126593721	126594721	+	795.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008230, exon 12 of 12)	exon (NM_008230, exon 12 of 12)	24457.0	NM_008230	15186.0	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	1.5	2.0	4.5	3.0	2.5	0.0
Merged-chr15-83155892-2	chr15	83155392	83156392	+	795.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_029787, intron 8 of 8)	intron (NM_029787, intron 8 of 8)	6247.0	NR_004432	104307.0	Mm.471434	NR_004432	ENSMUSG00000065176	Rnu12	-	RNA U12, small nuclear	snRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-41368275-4	chr8	41367777	41368777	+	795.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019734, intron 1 of 13)	intron (NM_019734, intron 1 of 13)	6420.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	46.0	49.0	49.5	17.0	70.0	29.0
Merged-chr5-142927565-2	chr5	142927065	142928065	+	795.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20811.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132976297-5	chr4	132975808	132976808	+	795.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010208, intron 1 of 12)	(TC)n|Simple_repeat|Simple_repeat	2213.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141363649-4	chr7	141363190	141364190	+	795.729187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133191)	TTS (NM_133191)	1420.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41206946-3	chr19	41206439	41207439	+	795.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011904)	promoter-TSS (NM_011904)	-165.0	NM_011904	24087.0	Mm.89983	NM_011904	ENSMUSG00000025013	Tll2	-	tolloid-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46507990-2	chr19	46507490	46508490	+	795.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	6342.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-63058756-2	chr11	63058256	63059256	+	795.700012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2903.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19314928-2	chr7	19314428	19315428	+	795.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-4883.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147389185-3	chr5	147388651	147389651	+	795.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010229, intron 1 of 23)	L1ME2|LINE|L1	11338.0	NM_010229	14255.0	Mm.194	NM_010229	ENSMUSG00000042817	Flt3	B230315G04|CD135|Flk-2|Flk2|Flt-3|Ly72|wmfl	FMS-like tyrosine kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94464070-3	chr10	94463545	94464545	+	795.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-50812.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-75449804-2	chr12	75449304	75450304	+	795.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33023.0	NM_175644	217674.0	Mm.252250	NM_175644	ENSMUSG00000048982	Gphb5	OGH|Zlut1	glycoprotein hormone beta 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-15331667-3	chr3	15331152	15332152	+	795.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001076679, intron 1 of 2)	intron (NM_001076679, intron 1 of 2)	650.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	2.5	0.0	3.5	0.0	0.0	3.0
Merged-chr6-4983409-3	chr6	4982907	4983907	+	795.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	80087.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-56525557-3	chr12	56525056	56526056	+	795.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045082, intron 1 of 6)	intron (NR_045082, intron 1 of 6)	3864.0	NR_045082	104798.0	Mm.310950	NR_045082	ENSMUSG00000112343	Sfta3-ps	AI413669|E030019B13Rik|Nanci	surfactant associated 3, pseudogene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51532098-2	chr10	51531598	51532598	+	795.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY5_I-int|LTR|ERVK	41200.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110613784-4	chr7	110613259	110614259	+	795.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 1 of 40)	intron (NM_177324, intron 1 of 40)	1161.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111505535-2	chr10	111505035	111506035	+	795.625	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009344)	promoter-TSS (NM_009344)	-751.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-111226472-4	chr7	111225979	111226979	+	795.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103804.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22962546-4	chr9	22962047	22963047	+	795.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-260529.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-103039961-3	chr4	103039466	103040466	+	795.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146254, intron 16 of 16)	intron (NM_146254, intron 16 of 16)	-13124.0	NM_001290648	23919.0	Mm.100163	NM_011831	ENSMUSG00000066090	Insl5	RIF2	insulin-like 5	protein-coding	0.0	5.5	2.5	3.0	2.0	1.0
Merged-chr11-109377537-4	chr11	109377014	109378014	+	795.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010303, intron 2 of 3)	MTD|LTR|ERVL-MaLR	-13860.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32581614-3	chr2	32581108	32582108	+	795.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198191, intron 9 of 9)	intron (NM_198191, intron 9 of 9)	-5470.0	NM_001276425	20448.0	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-54676754-4	chr9	54676251	54677251	+	795.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14866.0	NM_053178	94180.0	Mm.20592	NM_053178	ENSMUSG00000032281	Acsbg1	BG1|Bgm|E230019G03Rik|GR-LACS|Lpd|R75185	acyl-CoA synthetase bubblegum family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95711487-4	chr4	95710982	95711982	+	795.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029347, intron 6 of 10)	intron (NM_029347, intron 6 of 10)	132061.0	NM_029347	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121354941-3	chr9	121354447	121355447	+	795.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	-12011.0	NM_001357973	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109947555-2	chr8	109947055	109948055	+	795.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_212447)	TTS (NM_212447)	14650.0	NM_212447	73608.0	Mm.86833	NM_028584	ENSMUSG00000001672	Marveld3	1810006A16Rik|AI642133|Marvd3|Mrvldc3	MARVEL (membrane-associating) domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115617993-2	chr5	115617493	115618493	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172719, intron 53 of 57)	intron (NM_172719, intron 53 of 57)	13823.0	NR_027810	66123.0	Mm.133063	NM_021417	ENSMUSG00000107121	1110006O24Rik	-	RIKEN cDNA 1110006O24 gene	ncRNA	0.0	0.0	0.0	0.0	2.0	0.5
Merged-chr11-36947124-3	chr11	36946632	36947632	+	795.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2891.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66241436-2	chr14	66240936	66241936	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-27612.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	1.5	3.0	3.0	0.0	12.5	6.5
Merged-chr2-167892879-2	chr2	167892474	167893474	+	795.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39353.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr12-110709238-2	chr12	110708738	110709738	+	795.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-12843.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80716125-2	chr18	80715625	80716625	+	795.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3054.0	NM_001164110	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64305029-2	chr15	64304529	64305529	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	RMER4B|LTR|ERVK	7644.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-86883625-2	chr13	86883125	86884125	+	795.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-836830.0	NM_007749	12867.0	Mm.378898	NM_007749	ENSMUSG00000017778	Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-100463983-2	chr9	100463483	100464483	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033543, intron 5 of 6)	ORR1E|LTR|ERVL-MaLR	22490.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26941094-2	chr2	26940594	26941594	+	795.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_198628, exon 5 of 19)	exon (NM_198628, exon 5 of 19)	7025.0	NM_198628	279029.0	Mm.330079	NM_198628	ENSMUSG00000049897	Stkld1	Gm711|Sgk071	serine/threonine kinase-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96066335-2	chr11	96065835	96066835	+	795.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172300)	promoter-TSS (NM_172300)	-971.0	NM_172300	268470.0	Mm.38802	NM_172300	ENSMUSG00000014349	Ube2z	AW049199|C030047H17Rik|D11Moh35	ubiquitin-conjugating enzyme E2Z	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-6487800-2	chr3	6487302	6488302	+	795.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	132641.0	NM_027048	69347.0	Mm.45822	NM_027048	ENSMUSG00000069118	1700008P02Rik	-	RIKEN cDNA 1700008P02 gene	protein-coding	3.0	0.0	0.0	0.0	3.0	1.5
Merged-chr6-31118660-2	chr6	31118160	31119160	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-55567.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39005274-2	chr6	39004774	39005774	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 5 of 12)	ORR1F|LTR|ERVL-MaLR	62312.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81070664-2	chr10	81070164	81071164	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022653, intron 1 of 12)	B3A|SINE|B2	581.0	NM_022653	50492.0	Mm.26995	NM_022653	ENSMUSG00000004929	Thop1	AI131655|AI327041|EP24.15	thimet oligopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144606657-2	chr3	144606157	144607157	+	795.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	36230.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167823593-4	chr2	167823065	167824065	+	795.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108762.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49248885-3	chr11	49248402	49249402	+	795.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110149, intron 1 of 1)	intron (NM_001110149, intron 1 of 1)	1425.0	NM_001110149	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128703397-2	chr10	128702897	128703897	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183417, intron 3 of 7)	B1_Mus1|SINE|Alu	1654.0	NM_183417	12566.0	Mm.111326	NM_016756	ENSMUSG00000025358	Cdk2	A630093N05Rik	cyclin-dependent kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-60009637-2	chr6	60009137	60010137	+	795.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-68382.0	NR_152156	434019.0	Mm.445137	NR_152156	ENSMUSG00000073045	Gm5570	EG434019	predicted gene 5570	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116617379-2	chr11	116616879	116617879	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	6873.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3917941-2	chr12	3917441	3918441	+	795.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26197.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119195795-2	chr4	119195295	119196295	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038998, intron 1 of 2)	MIR3|SINE|MIR	270.0	NM_001038998	69216.0	Mm.36697	NM_024462	ENSMUSG00000028643	Svbp	2410005K17Rik|AI851162|Ccdc23	small vasohibin binding protein	protein-coding	0.0	2.5	0.0	0.0	1.0	0.0
Merged-chr9-70760241-2	chr9	70759741	70760741	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007399, intron 9 of 15)	intron (NM_007399, intron 9 of 15)	81259.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-103775618-2	chr13	103775118	103776118	+	795.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19|LTR|ERVK	-1010.0	NM_001361085	218543.0	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63386405-2	chr4	63385905	63386905	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 5 of 21)	intron (NM_001045514, intron 5 of 21)	11835.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92830150-2	chr1	92829650	92830650	+	795.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1495.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168575121-1	chr2	168574621	168575621	+	795.5	f0_balb.idr	intron (NM_001291169, intron 1 of 10)	intron (NM_001291169, intron 1 of 10)	15244.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	2.0	0.0	0.0	0.0	1.0	3.5
Merged-chr2-3769439-3	chr2	3768943	3769943	+	795.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	55985.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112924409-2	chr12	112923909	112924909	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010588, intron 2 of 25)	intron (NM_010588, intron 2 of 25)	-3868.0	NR_105906	102465567.0		NR_105906	ENSMUSG00000098338	Mir6941	Gm27923|mmu-mir-6941	microRNA 6941	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46361884-2	chr4	46361384	46362384	+	795.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	17690.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr13-21718785-2	chr13	21718285	21719285	+	795.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178206)	TTS (NM_178206)	1157.0	NM_178206	319152.0	Mm.377874	NM_178206	ENSMUSG00000101355	Hist1h3h	H3-291	histone cluster 1, H3h	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5382720-4	chr6	5382221	5383221	+	795.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023048)	promoter-TSS (NM_023048)	-665.0	NM_023048	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	4.0	1.0	5.5	0.0	1.0	3.5
Merged-chr11-117787472-2	chr11	117786972	117787972	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195090, intron 9 of 15)	intron (NM_001195090, intron 9 of 15)	4814.0	NM_001195088	217356.0	Mm.116675	NM_181856	ENSMUSG00000050106	Tmc8	EVIN2|Ever2|mFLJ00400	transmembrane channel-like gene family 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-98929514-1	chr14	98929014	98930014	+	795.5	f0_balb.idr	Intergenic	B4A|SINE|B4	116622.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64220403-2	chr15	64219903	64220903	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	92270.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.0	0.0	0.5	7.5	0.0	4.0
Merged-chr5-124114782-2	chr5	124114282	124115282	+	795.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_025671, exon 7 of 7)	exon (NM_025671, exon 7 of 7)	-1326.0	NM_144509	65105.0	Mm.29430	NM_144509	ENSMUSG00000029404	Arl6ip4	AA408210|AA408365|Aip-4|Srp25	ADP-ribosylation factor-like 6 interacting protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62521034-2	chr4	62520534	62521534	+	795.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008525)	promoter-TSS (NM_008525)	-971.0	NM_008525	17025.0	Mm.6988	NM_008525	ENSMUSG00000028393	Alad	ALADH|Lv	aminolevulinate, delta-, dehydratase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-140621655-2	chr6	140621155	140622155	+	795.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1008.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85262472-1	chr1	85261972	85262972	+	795.5	f1_balb.idr	intron (NM_175219, intron 1 of 7)	B1F|SINE|Alu	8094.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5577714-2	chr17	5577214	5578214	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	85114.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-24363731-4	chr18	24363226	24364226	+	795.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24360.0	NR_152129	328919.0	Mm.118671	NR_152129		Gm38410	9530053H22	predicted gene, 38410	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120740738-3	chr8	120740194	120741194	+	795.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301811, intron 2 of 8)	intron (NM_001301811, intron 2 of 8)	2055.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80710134-2	chr18	80709634	80710634	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 1 of 9)	intron (NM_198429, intron 1 of 9)	-1961.0	NM_001164112	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0.5	4.0	6.5	0.0	2.0	0.5
Merged-chr15-80784667-2	chr15	80784167	80785167	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144812, intron 3 of 24)	intron (NM_144812, intron 3 of 24)	-13943.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3904795-2	chr12	3904295	3905295	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 15 of 17)	intron (NM_153743, intron 15 of 17)	13051.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128820197-2	chr10	128819697	128820697	+	795.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001359824)	TTS (NM_001359824)	1432.0	NM_001359170	66844.0	Mm.235562	NM_024180	ENSMUSG00000025353	Ormdl2	0610012C09Rik	ORM1-like 2 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92667746-2	chr16	92667200	92668200	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111023, intron 3 of 5)	intron (NM_001111023, intron 3 of 5)	29629.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	1.0	0.0	0.0	0.5	0.0	2.0
Merged-chr5-135708486-2	chr5	135707986	135708986	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 1 of 15)	B1F2|SINE|Alu	19341.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	68.5	179.5	106.0	83.0	200.5	126.0
Merged-chr17-63324272-4	chr17	63323777	63324777	+	795.483337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 6 of 8)	intron (NM_015794, intron 6 of 8)	-11304.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150248249-4	chr4	150247746	150248746	+	795.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023119, intron 11 of 11)	intron (NM_023119, intron 11 of 11)	10922.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	0.0	2.0	1.5	0.0	2.0	1.5
Merged-chr8-46627542-3	chr8	46627029	46628029	+	795.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284409, intron 1 of 6)	intron (NM_001284409, intron 1 of 6)	10238.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124616664-4	chr5	124616166	124617166	+	795.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026486, intron 11 of 18)	intron (NM_026486, intron 11 of 18)	-12386.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	0.0	0.0	0.5	0.0	3.0	0.5
Merged-chr7-82869948-3	chr7	82869442	82870442	+	795.422241	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175366, exon 2 of 2)	exon (NM_175366, exon 2 of 2)	2609.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81317001-2	chr10	81316501	81317501	+	795.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293646, intron 17 of 18)	intron (NM_001293646, intron 17 of 18)	-4102.0	NM_027381	70312.0	Mm.87628	NM_027381	ENSMUSG00000034889	Cactin	2510012J08Rik	cactin, spliceosome C complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-95355385-4	chr1	95354879	95355879	+	795.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	41751.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44657630-4	chr10	44656980	44657980	+	795.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER121|DNA|TcMar?	-198732.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35067839-3	chr12	35067338	35068338	+	795.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	20649.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	10.5	3.5	10.5	2.5	26.0	4.0
Merged-chr17-81459628-2	chr17	81459128	81460128	+	795.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	278759.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121551466-2	chr11	121550966	121551966	+	795.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029878, intron 15 of 38)	intron (NM_029878, intron 15 of 38)	-32124.0	NM_178763	319530.0	Mm.11395	NM_178763	ENSMUSG00000039238	Zfp750	A030007D23Rik|Znf750	zinc finger protein 750	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-42962879-3	chr15	42962385	42963385	+	795.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	207933.0	NM_001357957	239405.0	Mm.193274	NM_172815	ENSMUSG00000051920	Rspo2	2610028F08Rik|AA673245|D430027K22|ftls	R-spondin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66067659-4	chr9	66067064	66068064	+	795.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011149)	TTS (NM_011149)	2167.0	NM_001025612	382083.0	Mm.477103	NM_001025612	ENSMUSG00000039452	Snx22	Gm1120	sorting nexin 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39085919-3	chr18	39085371	39086371	+	795.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 1 of 21)	intron (NM_001361073, intron 1 of 21)	92726.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-106301410-4	chr4	106300916	106301916	+	795.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14797.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	0.0	7.0	3.5	6.0	7.0	5.0
Merged-chr7-16396147-3	chr7	16395648	16396648	+	795.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5048.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167802082-2	chr2	167801582	167802582	+	795.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110905.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57534307-2	chr6	57533807	57534807	+	795.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_175523, intron 1 of 6)	intron (NM_175523, intron 1 of 6)	1119.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5255742-3	chr6	5255237	5256237	+	795.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173006, intron 1 of 8)	intron (NM_173006, intron 1 of 8)	496.0	NM_173006	269823.0	Mm.9122	NM_173006	ENSMUSG00000029759	Pon3	2810004E20|AI786302	paraoxonase 3	protein-coding	0.0	1.0	4.0	3.5	9.5	4.5
Merged-chr3-146345407-4	chr3	146344896	146345896	+	795.295837	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33548.0	NR_033542	100038607.0	Mm.365888	NR_033542	ENSMUSG00000105602	Gm10636	-	predicted gene 10636	ncRNA	0.0	5.0	4.5	11.0	3.5	0.0
Merged-chr10-117307241-4	chr10	117306728	117307728	+	795.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14360.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-153297984-3	chr3	153297483	153298483	+	795.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126464, intron 1 of 1)	intron (NR_126464, intron 1 of 1)	666.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41597668-3	chr13	41597171	41598171	+	795.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-8545.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-13591083-3	chr17	13590599	13591599	+	795.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37005.0	NR_045437	72578.0	Mm.46549	NR_045436	ENSMUSG00000038347	2700054A10Rik	-	RIKEN cDNA 2700054A10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-77194129-3	chr5	77193626	77194626	+	795.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	17079.0	NM_001289767	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	0.0	2.0	0.5	0.0	1.5	0.5
Merged-chr3-127923378-3	chr3	127922897	127923897	+	795.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040552, intron 1 of 4)	intron (NR_040552, intron 1 of 4)	7226.0	NR_040552	329753.0	Mm.119720	NR_040552	ENSMUSG00000104763	9830132P13Rik	9830132P13	RIKEN cDNA 9830132P13 gene	ncRNA	0.0	14.5	15.5	13.5	3.5	5.5
Merged-chr8-10923775-3	chr8	10923261	10924261	+	795.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_030715)	TTS (NR_030715)	4696.0	NR_030715	665306.0	Mm.358758	NR_030715	ENSMUSG00000038917	3930402G23Rik	-	RIKEN cDNA 3930402G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20785357-3	chr10	20784860	20785860	+	795.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60282.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.0	0.0	0.0	3.0	1.5	1.5
Merged-chr17-35178775-4	chr17	35178310	35179310	+	795.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2758.0	NM_001361501	11629.0	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167680891-4	chr2	167680422	167681422	+	795.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-7993.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128698559-5	chr4	128697993	128698993	+	795.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 1 of 14)	intron (NM_018774, intron 1 of 14)	9755.0	NM_018774	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-89908141-2	chr7	89907641	89908641	+	795.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4512.0	NM_001162979	70884.0	Mm.252823	NM_001162979	ENSMUSG00000039391	Ccdc81	4921513D09Rik	coiled-coil domain containing 81	protein-coding	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr19-21275866-4	chr19	21275373	21276373	+	795.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009551, intron 1 of 5)	intron (NM_009551, intron 1 of 5)	3595.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	0.5	1.0	3.0	1.0	2.5	4.5
Merged-chr19-36554082-3	chr19	36553593	36554593	+	795.1777950000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172637)	promoter-TSS (NM_172637)	-546.0	NM_001163471	226098.0	Mm.61107	NM_172637	ENSMUSG00000041180	Hectd2	4921524L07|A630025O09Rik|AW212605	HECT domain E3 ubiquitin protein ligase 2	protein-coding	0.5	7.0	13.0	0.5	2.5	6.5
Merged-chr2-101815555-3	chr2	101814970	101815970	+	795.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	-17763.0	NM_001083810	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27562423-2	chr17	27561923	27562923	+	795.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166543, intron 4 of 4)	intron (NM_001166543, intron 4 of 4)	3304.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	2.0	0.0	0.5	0.0	0.0	2.0
Merged-chr8-35496146-3	chr8	35495690	35496690	+	795.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026067)	promoter-TSS (NM_026067)	-657.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	3.0	8.0	9.0	41.5	19.0	10.5
Merged-chr2-174326827-2	chr2	174326327	174327327	+	795.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310083)	promoter-TSS (NM_001310083)	-941.0	NM_001310083	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	3.5	7.0	2.0	0.0	0.0	0.0
Merged-chr19-41349138-2	chr19	41348649	41349649	+	795.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	35921.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	8.0	4.0	3.0	7.0	7.0	5.5
Merged-chr13-44292613-5	chr13	44292113	44293113	+	795.133362	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76126.0	NR_045088	100503592.0	Mm.184925	NR_045088	ENSMUSG00000113186	A330076C08Rik	-	RIKEN cDNA A330076C08 gene	ncRNA	0.0	1.5	0.0	1.5	0.0	1.5
Merged-chr4-9072154-4	chr4	9071643	9072643	+	795.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-197150.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163640674-2	chr2	163640174	163641174	+	795.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_012032, intron 1 of 9)	intron (NM_012032, intron 1 of 9)	-4176.0	NR_028113	68386.0	Mm.410649	NR_028113	ENSMUSG00000058812	0610039K10Rik	-	RIKEN cDNA 0610039K10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-109481013-4	chr7	109480508	109481508	+	795.104126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_181853, exon 7 of 20)	exon (NM_181853, exon 7 of 20)	12730.0	NM_001170913	330627.0	Mm.183528	NM_181853	ENSMUSG00000031026	Trim66	Kiaa0298-hp|Tif1d	tripartite motif-containing 66	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47449080-4	chr19	47448560	47449560	+	795.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	MIR|SINE|MIR	15351.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	3.5	3.5	9.5	2.5	19.5	3.5
Merged-chr5-101966997-3	chr5	101966491	101967491	+	795.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 5 of 66)	intron (NM_172882, intron 5 of 66)	102930.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	24.5	47.0	30.5	8.5	35.0	30.5
Merged-chr10-59950890-3	chr10	59950358	59951358	+	795.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029083, exon 3 of 3)	exon (NM_029083, exon 3 of 3)	912.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105245847-4	chr4	105245387	105246387	+	795.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88540.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	3.0	9.5	5.5	7.5	12.0	3.5
Merged-chr14-26502883-4	chr14	26502431	26503431	+	795.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 1 of 22)	L1_Mur2|LINE|L1	31693.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36061001-3	chr17	36060503	36061503	+	795.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2632.0	NM_001199967	100529082.0	Mm.484641	NM_001199967	ENSMUSG00000079492	Gm11127	-	predicted gene 11127	protein-coding	0.0	5.0	4.5	0.0	7.0	0.0
Merged-chr16-62782456-3	chr16	62781977	62782977	+	795.044434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178925, intron 2 of 5)	intron (NM_178925, intron 2 of 5)	4239.0	NM_178925	106338.0	Mm.26321	NM_178925	ENSMUSG00000050312	Nsun3	6720484A09Rik|AU022521	NOL1/NOP2/Sun domain family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4616454-4	chr2	4615941	4616941	+	795.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	35694.0	NM_026045	67229.0	Mm.38529	NM_026045	ENSMUSG00000039449	Prpf18	2810441A10Rik	pre-mRNA processing factor 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75516013-2	chr10	75515513	75516513	+	795.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347201, intron 1 of 5)	intron (NM_001347201, intron 1 of 5)	1368.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47533609-2	chr9	47533109	47534109	+	795.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	3257.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11561292-2	chr8	11560792	11561792	+	795.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302459, intron 1 of 1)	intron (NM_001302459, intron 1 of 1)	2882.0	NM_001302459	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68004329-2	chr11	68003829	68004829	+	795.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018768, intron 4 of 7)	intron (NM_018768, intron 4 of 7)	37871.0	NM_018768	55943.0	Mm.3973	NM_018768	ENSMUSG00000020903	Stx8	0610007H08Rik|1110002H11Rik|4930571E13Rik|CARB	syntaxin 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45443238-2	chr13	45442738	45443738	+	795.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	53496.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	5.5	8.0	12.5	5.5	8.5	12.5
Merged-chr10-22702069-2	chr10	22701569	22702569	+	795.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178934, exon 5 of 5)	exon (NM_178934, exon 5 of 5)	27363.0	NR_106123	102465768.0		NR_106123	ENSMUSG00000098714	Mir7663	Gm28034|mmu-mir-7663	microRNA 7663	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-139069-1	chr1	138569	139569	+	795.0	f1_c57bl6.idr	Intergenic	Intergenic	3532429.0	NM_001011874	497097.0	Mm.454496	NM_001011874	ENSMUSG00000051951	Xkr4	AY534250|Gm210|XRG4|mKIAA1889	X-linked Kx blood group related 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-74367025-2	chr13	74366525	74367525	+	795.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-3025.0	NM_001033042	432779.0	Mm.324679	NM_001033042	ENSMUSG00000021579	Lrrc14b	AI595366	leucine rich repeat containing 14B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5084744-2	chr19	5084276	5085276	+	795.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001885, intron 1 of 1)	intron (NM_001001885, intron 1 of 1)	701.0	NM_001001885	381199.0	Mm.329663	NM_001001885	ENSMUSG00000061451	Tmem151a	AW125688|Gm961|Tmem151	transmembrane protein 151A	protein-coding	0.0	0.0	3.0	0.0	0.0	0.0
Merged-chr17-87314835-4	chr17	87314330	87315330	+	795.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 5 of 19)	intron (NM_028639, intron 5 of 19)	31944.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81339916-2	chr7	81339416	81340416	+	795.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	5318.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38086448-1	chr16	38085948	38086948	+	795.0	f1_c57bl6.idr	non-coding (NR_033221, exon 1 of 1)	non-coding (NR_033221, exon 1 of 1)	-2553.0	NM_001347232	56637.0	Mm.394930	NM_019827	ENSMUSG00000022812	Gsk3b	7330414F15Rik|8430431H08Rik|C86142|GSK-3|GSK-3beta|GSK3	glycogen synthase kinase 3 beta	protein-coding	5.0	3.5	0.5	5.0	0.0	5.0
Merged-chr16-33933979-2	chr16	33933479	33934479	+	795.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	33059.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119439686-2	chr8	119439186	119440186	+	795.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027950, intron 1 of 5)	intron (NM_027950, intron 1 of 5)	2524.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118744406-2	chr11	118743906	118744906	+	795.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024931, intron 2 of 14)	intron (NM_001024931, intron 2 of 14)	16635.0	NM_001285438	52897.0	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127549106-2	chr10	127548608	127549608	+	795.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 68 of 88)	intron (NM_008512, intron 68 of 88)	-14549.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.0	2.0	0.0	0.0	1.0	0.5
Merged-chr14-51052857-2	chr14	51052357	51053357	+	795.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2694.0	NM_001011877	497113.0	Mm.379741	NM_001011877	ENSMUSG00000059648	Rnase11	Raj1	ribonuclease, RNase A family, 11 (non-active)	protein-coding	12.5	14.5	38.0	10.5	33.5	37.0
Merged-chr6-86370253-2	chr6	86369753	86370753	+	795.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025591)	TTS (NM_025591)	-1287.0	NM_026506	68011.0	Mm.276802	NM_026506	ENSMUSG00000057278	Snrpg	2810024K17Rik|AL022803|SMG|sm-G|snRNP-G	small nuclear ribonucleoprotein polypeptide G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-114793993-1	chr4	114793493	114794493	+	795.0	f1_c57bl6.idr	Intergenic	Intergenic	-27727.0	NR_033617	433746.0	Mm.388908	NR_033617	ENSMUSG00000055198	Gm12830	-	predicted gene 12830	ncRNA	4.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76178642-2	chr14	76178142	76179142	+	795.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	67751.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-93481426-2	chr4	93480926	93481926	+	795.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR84a|LTR|ERVL	-145915.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	0.0	0.5	2.0	0.0	0.5	0.0
Merged-chr7-122477179-2	chr7	122476679	122477679	+	795.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 5 of 16)	intron (NM_001316672, intron 5 of 16)	188054.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-45905314-1	chr1	45904814	45905814	+	795.0	f0_balb.idr	Intergenic	Intergenic	20280.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47071923-1	chr14	47071423	47072423	+	795.0	f1_balb.idr	intron (NM_001310544, intron 1 of 7)	intron (NM_001310544, intron 1 of 7)	2946.0	NM_001310544	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	7.5	4.0	3.5	15.0	28.0	1.5
Merged-chr8-71285487-2	chr8	71284987	71285987	+	795.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 1 of 39)	intron (NM_001142322, intron 1 of 39)	12773.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153156263-4	chr2	153155746	153156746	+	795.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5055.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28344919-2	chr7	28344419	28345419	+	795.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-5770.0	NM_013647	20055.0	Mm.702	NM_013647	ENSMUSG00000037563	Rps16	AA420385|AI317031	ribosomal protein S16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116638525-1	chr3	116638025	116639025	+	795.0	f0_c57.idr	intron (NM_008246, intron 8 of 11)	intron (NM_008246, intron 8 of 11)	-23938.0	NM_030016	229780.0	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	21.5	47.0	37.5	25.5	45.5	36.5
Merged-chr9-37614451-2	chr9	37613951	37614951	+	795.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324545)	promoter-TSS (NM_001324545)	604.0	NM_011734	22619.0	Mm.196345	NM_011734	ENSMUSG00000001942	Siae	LSE|Ysg2	sialic acid acetylesterase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30397866-2	chr16	30397352	30398352	+	795.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9322.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	2.0	2.0	0.5	2.0	2.0	0.5
Merged-chr17-10232647-3	chr17	10232152	10233152	+	795.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021881, intron 4 of 6)	intron (NM_021881, intron 4 of 6)	86709.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70710139-1	chr8	70709639	70710639	+	795.0	f1_c57bl6.idr	Intergenic	Intergenic	-8404.0	NM_001195253	100502950.0	Mm.52981	NM_001195253	ENSMUSG00000095026	Gm3336	100041434|2410018E23Rik	predicted gene 3336	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr10-94054485-1	chr10	94053985	94054985	+	795.0	f0_balb.idr	intron (NM_053072, intron 2 of 20)	intron (NM_053072, intron 2 of 20)	18484.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	15.5	13.5	17.5	12.0	5.5	11.5
Merged-chr19-46519391-2	chr19	46518891	46519891	+	795.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17743.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-107896446-2	chr5	107895946	107896946	+	795.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4082.0	NM_016980	100503670.0	Mm.277897	NM_016980	ENSMUSG00000058558	Rpl5	U21RNA	ribosomal protein L5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-36318442-3	chr3	36317954	36318954	+	795.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-96179.0	NM_198192	229214.0	Mm.330975	NM_198192	ENSMUSG00000058400	Qrfpr	AQ27|Gpr103|SP9155	pyroglutamylated RFamide peptide receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-81440735-3	chr6	81440232	81441232	+	795.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	454931.0	NR_106091	102465711.0		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA	1.0	11.0	5.5	2.0	8.0	2.5
Merged-chr2-125322791-2	chr2	125322291	125323291	+	795.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007993, intron 50 of 65)	intron (NM_007993, intron 50 of 65)	75276.0	NM_023595	110074.0	Mm.282499	NM_023595	ENSMUSG00000027203	Dut	5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase	deoxyuridine triphosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79660607-2	chr11	79660107	79661107	+	795.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175543, intron 3 of 14)	CpG	14479.0	NR_045898	72218.0	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67859089-2	chr10	67858589	67859589	+	795.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53573.0	NM_178679	216049.0	Mm.268346	NM_178679	ENSMUSG00000037855	Zfp365	AI839779|AV340892|DBZ|Su48|Znf365|talanin	zinc finger protein 365	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-22018157-2	chr13	22017657	22018657	+	795.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8416.0	NM_019429	54373.0	Mm.32043	NM_019429	ENSMUSG00000006179	Prss16	AI448615|TSSP	protease, serine 16 (thymus)	protein-coding	0.0	5.0	0.5	0.0	0.0	0.0
Merged-chr10-80449391-2	chr10	80448891	80449891	+	795.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15738.0	NM_001164148	21423.0	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45134219-2	chr13	45133719	45134719	+	795.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132123.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32922421-2	chr12	32921921	32922921	+	795.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_044986, intron 3 of 5)	ORR1F|LTR|ERVL-MaLR	31368.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79015793-2	chr12	79015264	79016264	+	795.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-8487.0	NM_178745	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	0.0	5.5	1.0	28.5	50.5	65.5
Merged-chr19-34565356-2	chr19	34564866	34565866	+	795.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355262, intron 1 of 2)	(TC)n|Simple_repeat|Simple_repeat	14278.0	NM_001355262	15958.0	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	1.0	0.0	1.0	4.5	0.0	3.5
Merged-chr14-33310852-2	chr14	33310352	33311352	+	795.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 4 of 10)	RLTR28|LTR|ERVL	94029.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27263682-2	chr2	27263182	27264182	+	795.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_133905, exon 30 of 30)	non-coding (NR_133905, exon 30 of 30)	-16379.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66346073-2	chr9	66345573	66346573	+	795.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4377.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120012902-4	chr9	120012353	120013353	+	794.99585	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011724)	TTS (NM_011724)	10745.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	0.0	1.5	3.0	0.0	0.0	2.5
Merged-chr11-88989688-3	chr11	88989226	88990226	+	794.988892	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016706, intron 6 of 6)	intron (NM_016706, intron 6 of 6)	-9677.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	4.5	6.5	1.0	5.5	5.5	2.5
Merged-chr5-148494791-4	chr5	148494296	148495296	+	794.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56877.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73000030-4	chr15	72999535	73000535	+	794.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_180662, exon 8 of 22)	exon (NM_180662, exon 8 of 22)	55777.0	NM_029640	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	0.5	0.5	1.0	0.0	0.0	0.5
Merged-chr15-75886113-4	chr15	75885616	75886616	+	794.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282443, intron 7 of 13)	intron (NM_001282443, intron 7 of 13)	2607.0	NM_001282443	223645.0		NM_001282443	ENSMUSG00000098678	Mroh6	Gm19570	maestro heat-like repeat family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20078621-4	chr14	20078115	20079115	+	794.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026209, intron 1 of 1)	intron (NM_026209, intron 1 of 1)	4557.0	NM_026209	67509.0	Mm.292423	NM_026209	ENSMUSG00000045107	Saysd1	1810063B07Rik|4930488P03Rik	SAYSVFN motif domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92824611-6	chr16	92824078	92825078	+	794.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	1496.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-122125947-4	chr9	122125506	122126506	+	794.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357776, intron 1 of 5)	intron (NM_001357776, intron 1 of 5)	8547.0	NM_001357776	20623.0	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	2.0	0.0	0.5	1.0	0.0	0.5
Merged-chr10-95476138-3	chr10	95475648	95476648	+	794.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25801.0	NM_001359476	67270.0	Mm.30008	NM_026065	ENSMUSG00000062981	Mrpl42	2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|L42mt|MRP-L31|MRP-L42|MRP-S32|PTD007|Rpml31|S32mt	mitochondrial ribosomal protein L42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25826747-3	chr15	25826309	25827309	+	794.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B1|LTR|ERVL	-16489.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-62329737-3	chr14	62329238	62330238	+	794.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2330.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	0.5	6.5	1.0	0.5	0.0	4.0
Merged-chr13-49180329-2	chr13	49179829	49180829	+	794.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-7218.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81174629-2	chr10	81174129	81175129	+	794.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2002.0	NM_007907	13629.0	Mm.2903	NM_007907	ENSMUSG00000034994	Eef2	Ef-2	eukaryotic translation elongation factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-150156221-4	chr5	150155720	150156720	+	794.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-103710.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59017633-3	chr15	59017135	59018135	+	794.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	MLT1A0|LTR|ERVL-MaLR	64391.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22326310-6	chr9	22325802	22326802	+	794.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4388.0	NR_033622	625603.0	Mm.37987	NR_033622		Gm6607	EG625603	40S ribosomal protein S20 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-23587955-3	chr15	23587443	23588443	+	794.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	551480.0	NM_001081299	320865.0	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l|Tg(GFAP-APOE_i4)1Hol	cadherin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-23887306-4	chr5	23886788	23887788	+	794.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19|LTR|ERVK	35055.0	NR_028536	100217436.0		NR_028536		Snord93	Gm22397|MBII-336	small nucleolar RNA, C/D box 93	snoRNA	7.5	3.5	8.5	7.5	6.5	8.0
Merged-chr6-97150424-4	chr6	97149911	97150911	+	794.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1528.0	NM_175313	101351.0	Mm.116802	NM_175313	ENSMUSG00000035245	Eogt	A130022J15Rik|AI447490|AW214473|AW259391|Aer61	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85518582-4	chr11	85518058	85519058	+	794.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 16 of 25)	intron (NM_138681, intron 16 of 25)	165394.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117217445-4	chr10	117216962	117217962	+	794.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026570, exon 5 of 7)	exon (NM_026570, exon 5 of 7)	7045.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129097608-4	chr6	129097115	129098115	+	794.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153506, intron 2 of 4)	intron (NM_153506, intron 2 of 4)	3288.0	NM_153506	232409.0	Mm.30870	NM_153506	ENSMUSG00000030155	Clec2e	Clra|clr-a	C-type lectin domain family 2, member e	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98193995-5	chr7	98193556	98194556	+	794.788879	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081167, exon 2 of 2)	exon (NM_001081167, exon 2 of 2)	5419.0	NM_001081167	272411.0	Mm.98333	NM_001081167	ENSMUSG00000074004	B3gnt6	BC039789|Core-3|Core3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-102716040-3	chr3	102715532	102716532	+	794.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-18738.0	NM_027533	70747.0	Mm.27469	NM_027533	ENSMUSG00000027858	Tspan2	6330415F13Rik|B230119D02Rik|tspan-2	tetraspanin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37702549-3	chr19	37702048	37703048	+	794.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4740.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135773272-3	chr5	135772765	135773765	+	794.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029659, intron 1 of 8)	intron (NM_029659, intron 1 of 8)	5036.0	NM_001289554	76571.0	Mm.247666	NM_029659	ENSMUSG00000019178	Styxl1	1700011C14Rik|Dusp24|Mkstyx	serine/threonine/tyrosine interacting-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30347981-3	chr7	30347498	30348498	+	794.755554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	14774.0	NM_175478	233067.0	Mm.23157	NM_175478	ENSMUSG00000036957	Lrfn3	A530045B06Rik|SALM4	leucine rich repeat and fibronectin type III domain containing 3	protein-coding	11.5	0.0	1.0	0.0	0.0	3.5
Merged-chr4-3687050-2	chr4	3686592	3687592	+	794.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	B2_Mm2|SINE|B2	8971.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	13.0	14.5	25.5	9.0	41.5	14.0
Merged-chr13-99328582-2	chr13	99328082	99329082	+	794.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_026873, intron 7 of 9)	intron (NM_026873, intron 7 of 9)	16096.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	0.0	0.5	2.5	0.0	4.0	1.5
Merged-chr2-167676595-2	chr2	167676095	167677095	+	794.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12320.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147343210-2	chr4	147342710	147343710	+	794.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	167344.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-134239650-2	chr3	134239150	134240150	+	794.75	f1_balb.idr|f1_c57bl6.idr	TTS (NR_035435)	TTS (NR_035435)	933.0	NR_035435	100316832.0		NR_035435	ENSMUSG00000084564	Mir1895	Mirn1895|mmu-mir-1895	microRNA 1895	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-96855964-2	chr5	96855464	96856464	+	794.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	62579.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	3.0	3.5	8.5	6.5	13.5	5.5
Merged-chr1-78709333-1	chr1	78708833	78709833	+	794.75	f0_balb.idr	Intergenic	Intergenic	50893.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	0.5	1.5	0.0	0.5	1.5	0.0
Merged-chr15-86054080-2	chr15	86053580	86054580	+	794.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3615.0	NM_172611	223752.0	Mm.24442	NM_172611	ENSMUSG00000035900	Gramd4	9930016O13	GRAM domain containing 4	protein-coding	0.0	2.0	3.0	0.0	0.0	0.0
Merged-chr4-141645256-2	chr4	141644748	141645748	+	794.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	MIR3|SINE|MIR	18867.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	34.5	96.0	73.0	26.5	48.5	39.0
Merged-chr1-64738908-3	chr1	64738417	64739417	+	794.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1167.0	NM_022721	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43993570-4	chr19	43993060	43994060	+	794.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7040.0	NM_030703	93721.0	Mm.206774	NM_030703	ENSMUSG00000025196	Cpn1	0610011F20Rik|CPN	carboxypeptidase N, polypeptide 1	protein-coding	1.5	13.5	8.5	4.5	10.5	3.0
Merged-chr1-175619990-4	chr1	175619473	175620473	+	794.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010209, intron 1 of 9)	RMER19B|LTR|ERVK	5662.0	NM_010209	14194.0	Mm.41502	NM_010209	ENSMUSG00000026526	Fh1	Fh|Fh-1	fumarate hydratase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr11-116807659-1	chr11	116807159	116808159	+	794.666687	f0_balb.idr	3' UTR (NM_001347633, exon 5 of 5)	3' UTR (NM_001347633, exon 5 of 5)	20387.0	NM_026280	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	8.0	1.0	0.5	3.0	6.5	2.5
Merged-chr9-56105368-3	chr9	56104898	56105898	+	794.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	15422.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8714121-3	chr15	8713623	8714623	+	794.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3316.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78306238-2	chr10	78305738	78306738	+	794.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_053014, intron 2 of 9)	intron (NM_053014, intron 2 of 9)	33969.0	NR_106119	102465765.0		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-58399878-2	chr7	58399378	58400378	+	794.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-258324.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	4.0	4.5	6.0	2.0	5.0	7.0
Merged-chr7-83652193-2	chr7	83651693	83652693	+	794.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001360089, exon 2 of 7)	exon (NM_001360089, exon 2 of 7)	3302.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-54195920-2	chr4	54195422	54196422	+	794.666626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	369877.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	1.0	1.0	15.5	6.5	3.0	5.0
Merged-chr13-94977258-7	chr13	94976775	94977775	+	794.642883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172590, intron 1 of 12)	intron (NM_172590, intron 1 of 12)	931.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99825180-3	chr15	99824670	99825670	+	794.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113545, intron 3 of 10)	ID_B1|SINE|B4	-5021.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-24735321-3	chr12	24734836	24735836	+	794.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	27082.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	0.0	0.0	1.5	0.0	0.0	0.5
Merged-chr13-113266757-3	chr13	113266239	113267239	+	794.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57080.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98884710-4	chr12	98884211	98885211	+	794.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081191, intron 2 of 43)	intron (NM_001081191, intron 2 of 43)	16773.0	NM_001081191	319670.0	Mm.390484	NM_001081191	ENSMUSG00000051166	Eml5	BC027154|C130068M19Rik	echinoderm microtubule associated protein like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3130389-2	chr11	3129876	3130876	+	794.583374	f0_balb.idr|f1_balb.idr	non-coding (NR_003517, exon 7 of 7)	non-coding (NR_003517, exon 7 of 7)	6355.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-78860101-2	chr12	78859640	78860640	+	794.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_023721, intron 1 of 8)	intron (NM_023721, intron 1 of 8)	1498.0	NM_023721	73834.0	Mm.311549	NM_023721	ENSMUSG00000021114	Atp6v1d	1110004P10Rik|Atp6m|VATD|Vma8	ATPase, H+ transporting, lysosomal V1 subunit D	protein-coding	30.5	61.5	33.5	40.0	97.5	40.5
Merged-chr5-44058470-2	chr5	44057970	44058970	+	794.583313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163578, intron 2 of 22)	intron (NM_001163578, intron 2 of 22)	36298.0	NM_001163581	19126.0	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	4.5	2.5	1.0	13.0	8.5	8.5
Merged-chr13-30933174-4	chr13	30932691	30933691	+	794.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025588, intron 4 of 27)	intron (NM_025588, intron 4 of 27)	14570.0	NM_153072	210554.0	Mm.450571	NM_153072	ENSMUSG00000076430	Hus1b	-	HUS1 checkpoint clamp component B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134249824-4	chr4	134249325	134250325	+	794.575012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4234.0	NM_024215	68040.0	Mm.300404	NM_024215	ENSMUSG00000028840	Zfp593	3110024A21Rik|AV062409|E130106C14Rik|ZNF593	zinc finger protein 593	protein-coding	1.0	9.5	0.0	2.0	1.5	6.5
Merged-chr15-30616558-3	chr15	30616092	30617092	+	794.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-422534.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	0.5	1.0	2.5	3.5	4.0	1.5
Merged-chr10-80259804-3	chr10	80259304	80260304	+	794.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347119, exon 2 of 6)	exon (NM_001347119, exon 2 of 6)	1208.0	NM_001347119	14431.0	Mm.7329	NM_010255	ENSMUSG00000020150	Gamt	AA571402|Spintz1	guanidinoacetate methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-39639160-3	chr8	39638633	39639633	+	794.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113326, intron 1 of 9)	intron (NM_001113326, intron 1 of 9)	3545.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	23.0	19.5	10.0	5.5	17.0	13.0
Merged-chr11-110372378-2	chr11	110371867	110372867	+	794.5	f0_balb.idr|f0_c57.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-26735.0	NM_001356345	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84969828-2	chr12	84969328	84970328	+	794.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178065, intron 1 of 19)	intron (NM_178065, intron 1 of 19)	1058.0	NM_178065	68497.0	Mm.24446	NM_178065	ENSMUSG00000042350	Arel1	1110018G07Rik|AI649076|AW610792|Kiaa0317|mKIAA0317	apoptosis resistant E3 ubiquitin protein ligase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35281012-2	chr9	35280585	35281585	+	794.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040715)	promoter-TSS (NR_040715)	-20.0	NR_040715	71133.0	Mm.158577	NR_040715	ENSMUSG00000111746	4933422A05Rik	-	RIKEN cDNA 4933422A05 gene	ncRNA	0.0	0.0	0.0	0.0	3.5	0.0
Merged-chr11-117878029-1	chr11	117877529	117878529	+	794.5	f0_balb.idr	Intergenic	Intergenic	-4503.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86007469-2	chr12	86006969	86007969	+	794.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 30 of 32)	intron (NM_001347395, intron 30 of 32)	71572.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101997877-2	chr5	101997377	101998377	+	794.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	B4A|SINE|B4	72044.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	41.5	81.5	46.5	26.5	66.5	88.5
Merged-chr11-115638049-2	chr11	115637549	115638549	+	794.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-9754.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77272228-2	chr10	77271728	77272728	+	794.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12928.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66184334-2	chr14	66183834	66184834	+	794.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 5 of 30)	L1MC1|LINE|L1	29490.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125383302-2	chr6	125382802	125383802	+	794.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-2798.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr9-15282405-2	chr9	15281905	15282905	+	794.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001199484)	TTS (NM_001199484)	-2538.0	NM_144933	234959.0	Mm.44151	NM_144933	ENSMUSG00000031935	Med17	77kDa|C330002H14Rik|Crsp6|Trap80	mediator complex subunit 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94462415-2	chr10	94461915	94462915	+	794.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-52442.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111271957-2	chr12	111271457	111272457	+	794.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033603, intron 3 of 11)	CpG-3528	861.0	NM_033603	93835.0	Mm.197639	NM_033603	ENSMUSG00000021278	Amn	-	amnionless	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101010601-2	chr11	101010083	101011083	+	794.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243049, intron 1 of 20)	intron (NM_001243049, intron 1 of 20)	1131.0	NM_001243051	11975.0	Mm.340818	NM_016920	ENSMUSG00000019302	Atp6v0a1	AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1	ATPase, H+ transporting, lysosomal V0 subunit A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65562742-2	chr9	65562242	65563242	+	794.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 3 of 5)	intron (NM_153119, intron 3 of 5)	17345.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	6.5	6.0	6.5	7.0	26.0	9.5
Merged-chr10-22036453-2	chr10	22035965	22036965	+	794.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	31614.0	NM_053264	114671.0	Mm.288194	NM_053264	ENSMUSG00000069712	4930444G20Rik	-	RIKEN cDNA 4930444G20 gene	protein-coding	2.0	3.5	1.0	4.0	6.5	2.0
Merged-chr2-111692157-2	chr2	111691657	111692657	+	794.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033534, exon 4 of 4)	non-coding (NR_033534, exon 4 of 4)	24720.0	NR_033534	258199.0	Mm.437874	NR_033534	ENSMUSG00000109389	Olfr1300-ps1	MOR248-12	olfactory receptor 1300, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83749975-4	chr8	83749465	83750465	+	794.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-8654.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	138.5	300.5	229.5	128.5	378.5	209.0
Merged-chr9-87021274-2	chr9	87020774	87021774	+	794.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024195)	promoter-TSS (NM_024195)	-755.0	NM_024195	266690.0	Mm.30166	NM_024195	ENSMUSG00000032872	Cyb5r4	2810034J18Rik|B5+B5R|C79736|Cb5cb5r|Ncb5or|b5/b5r|b5b5r	cytochrome b5 reductase 4	protein-coding	1.5	0.0	0.0	0.0	1.5	0.0
Merged-chr8-70719298-2	chr8	70718788	70719788	+	794.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195253, intron 1 of 3)	intron (NM_001195253, intron 1 of 3)	745.0	NM_001195253	100502950.0	Mm.52981	NM_001195253	ENSMUSG00000095026	Gm3336	100041434|2410018E23Rik	predicted gene 3336	protein-coding	59.5	162.5	155.5	98.5	213.5	259.0
Merged-chr1-170864911-2	chr1	170864411	170865411	+	794.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 1 of 15)	MTD|LTR|ERVL-MaLR	2860.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95499117-2	chr3	95498617	95499617	+	794.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007802)	promoter-TSS (NM_007802)	-93.0	NM_007802	13038.0	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143526103-2	chr5	143525603	143526603	+	794.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347530, intron 1 of 6)	Lx8b|LINE|L1	1890.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101978133-2	chr15	101977633	101978633	+	794.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23846.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118880455-2	chr10	118879955	118880955	+	794.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11552.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-73234357-2	chr16	73233857	73234857	+	794.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	571208.0	NM_019413	19876.0	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32241043-2	chr18	32240543	32241543	+	794.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133658, intron 2 of 14)	intron (NM_133658, intron 2 of 14)	712.0	NM_133658	13872.0	Mm.282335	NM_133658	ENSMUSG00000024382	Ercc3	BTF2 p89|Ercc-3|XPB	excision repair cross-complementing rodent repair deficiency, complementation group 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-81630749-2	chr17	81630249	81631249	+	794.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	107638.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34105822-2	chr5	34105315	34106315	+	794.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_181857, intron 13 of 24)	RMER19B|LTR|ERVK	-12925.0	NR_040703	75357.0	Mm.410806	NR_040703	ENSMUSG00000106902	4930557J02Rik	-	RIKEN cDNA 4930557J02 gene	ncRNA	11.5	13.5	11.5	10.5	17.0	2.5
Merged-chr17-71096354-2	chr17	71095841	71096841	+	794.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083934, intron 21 of 36)	intron (NM_001083934, intron 21 of 36)	76784.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	3.5	17.0	21.0	3.0	27.5	3.0
Merged-chr1-171615390-2	chr1	171614893	171615893	+	794.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-7983.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	8.0	19.0	13.0	6.5	18.5	13.0
Merged-chr2-124740148-2	chr2	124739648	124740648	+	794.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86567.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-36736716-4	chr19	36736227	36737227	+	794.483337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016854)	promoter-TSS (NM_016854)	-123.0	NM_016854	53412.0	Mm.24724	NM_016854	ENSMUSG00000067279	Ppp1r3c	PTG|Ppp1r5	protein phosphatase 1, regulatory (inhibitor) subunit 3C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92099576-4	chr5	92099116	92100116	+	794.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-15872.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	3.5	1.0	7.5	3.5	0.5	9.0
Merged-chr15-36684314-3	chr15	36683821	36684821	+	794.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-75348.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152008224-3	chr4	152007733	152008733	+	794.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033352)	promoter-TSS (NM_001033352)	-658.0	NM_001033352	242785.0	Mm.22306	NM_001033352	ENSMUSG00000073700	Klhl21	1810045K06Rik|D330008A20|mKIAA0469	kelch-like 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99109343-4	chr9	99108847	99109847	+	794.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 2 of 23)	intron (NM_029094, intron 2 of 23)	30864.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-52600701-4	chr18	52600208	52601208	+	794.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15207.0	NM_025749	66758.0	Mm.251599	NM_025749	ENSMUSG00000046886	Zfp474	4933409D10Rik|Znf474	zinc finger protein 474	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90924852-4	chr16	90924363	90925363	+	794.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026502)	TTS (NM_026502)	9986.0	NM_026502	68001.0	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-78200871-2	chr16	78200371	78201371	+	794.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54583.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58495076-2	chr13	58494576	58495576	+	794.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91733.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-37754348-3	chr3	37753845	37754845	+	794.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29985.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105651474-6	chr5	105651036	105652036	+	794.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48433.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	8.0	36.5	31.0	56.0	105.0	93.5
Merged-chr9-110999346-3	chr9	110998785	110999785	+	794.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152179, intron 2 of 6)	intron (NR_152179, intron 2 of 6)	-9572.0	NM_153100	235636.0	Mm.441138	NM_153100	ENSMUSG00000066319	Rtp3	Tmem7	receptor transporter protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124790274-3	chr6	124789776	124790776	+	794.383362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12BD_Mm|LTR|ERVK	-10549.0	NM_001302555	16977.0	Mm.3207	NM_013588	ENSMUSG00000030125	Lrrc23	4921537K05Rik|B7|Lrpb7	leucine rich repeat containing 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60915932-4	chr18	60915428	60916428	+	794.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038499, intron 1 of 1)	MIR|SINE|MIR	3688.0	NM_001038499	545260.0	Mm.20147	NM_001038499	ENSMUSG00000036412	Arsi	BC020108	arylsulfatase i	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr5-135689828-4	chr5	135689343	135690343	+	794.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 1 of 15)	intron (NM_008898, intron 1 of 15)	698.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105400028-2	chr5	105399528	105400528	+	794.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-15747.0	NM_001033550	433926.0	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	2210408K08Rik|R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	0.0	3.0	0.0	2.0	3.5	1.0
Merged-chr1-131679200-2	chr1	131678731	131679731	+	794.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-9464.0	NM_001311096	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	7.0	27.0	13.5	18.0	31.5	16.0
Merged-chr11-83832584-2	chr11	83832116	83833116	+	794.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18253.0	NM_001291268	21410.0	Mm.7226	NM_009330	ENSMUSG00000020679	Hnf1b	HNF-1-beta|HNF-1B|HNF-1Beta|Hnf1beta|LFB3|Tcf-2|Tcf2|vHNF1	HNF1 homeobox B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-9978555-2	chr8	9978055	9979055	+	794.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081119, intron 1 of 1)	intron (NM_001081119, intron 1 of 1)	838.0	NM_026868	68904.0	Mm.142570	NM_026868	ENSMUSG00000040396	Abhd13	1110065L07Rik|AI463703|AI788994	abhydrolase domain containing 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27310381-2	chr2	27309881	27310881	+	794.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 3 of 29)	B4|SINE|B4	-63078.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70206614-3	chr14	70206111	70207111	+	794.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271407)	promoter-TSS (NM_001271407)	-589.0	NM_001271407	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22227289-4	chr8	22226799	22227799	+	794.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019576)	promoter-TSS (NM_019576)	-4.0	NM_001205253	56229.0	Mm.32067	NM_019576	ENSMUSG00000031480	Thsd1	4833423O18Rik|Tmtsp	thrombospondin, type I, domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30806088-4	chr7	30805575	30806575	+	794.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	14902.0	NM_001168512	233079.0	Mm.97338	NM_146187	ENSMUSG00000051314	Ffar2	GPCR43|Gpr43	free fatty acid receptor 2	protein-coding	0.0	0.0	0.0	0.0	4.0	0.0
Merged-chr6-129401766-2	chr6	129401266	129402266	+	794.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_001204239, exon 3 of 5)	exon (NM_001204239, exon 3 of 5)	4469.0	NM_001204239	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-36155283-4	chr12	36154801	36155801	+	794.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025840, intron 1 of 11)	intron (NM_025840, intron 1 of 11)	1524.0	NM_025840	66912.0	Mm.288669	NM_025840	ENSMUSG00000020547	Bzw2	1110001I24Rik|Bdm2|HSPC028	basic leucine zipper and W2 domains 2	protein-coding	2.0	4.0	2.0	5.5	0.0	0.0
Merged-chr1-134703687-3	chr1	134703176	134704176	+	794.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009307, intron 2 of 9)	intron (NM_009307, intron 2 of 9)	-5624.0	NM_001355726	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-40763606-4	chr11	40763104	40764104	+	794.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-8318.0	NM_009831	12450.0	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr12-69951261-3	chr12	69950765	69951765	+	794.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178628, intron 9 of 14)	Lx7|LINE|L1	-12144.0	NR_036607	100040999.0	Mm.394588	NR_036607	ENSMUSG00000079076	Gm3086	-	RuvB-like protein 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51373191-3	chr3	51372709	51373709	+	794.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	23338.0	NR_028121	67749.0	Mm.273339	NM_026358	ENSMUSG00000037161	Mgarp	4930583H14Rik|AI195347|CESP-1|HUMMR|Osap|Qsap	mitochondria localized glutamic acid rich protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86899398-1	chr4	86898898	86899898	+	794.333313	f0_balb.idr	intron (NM_001290541, intron 3 of 4)	intron (NM_001290541, intron 3 of 4)	24984.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	2.5	12.0	7.0	8.5	23.0	13.0
Merged-chr2-52785258-4	chr2	52784764	52785764	+	794.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43115.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-44457001-2	chr17	44456501	44457501	+	794.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	268429.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107334338-3	chr11	107333842	107334842	+	794.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	136378.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-81412566-3	chr6	81412049	81413049	+	794.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	483114.0	NR_106091	102465711.0		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA	0.0	3.5	2.5	8.0	0.0	2.0
Merged-chr5-145113476-2	chr5	145112976	145113976	+	794.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023142)	promoter-TSS (NM_023142)	-780.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57499595-4	chr16	57499073	57500073	+	794.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-49669.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35499134-4	chr2	35498668	35499668	+	794.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37719.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5568167-2	chr17	5567667	5568667	+	794.267822	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	75567.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-45751881-3	chr11	45751319	45752319	+	794.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56264.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69689228-4	chr11	69688723	69689723	+	794.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011614, intron 5 of 6)	intron (NM_011614, intron 5 of 6)	-3669.0	NM_023517	69583.0	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109169302-4	chr3	109168786	109169786	+	794.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172685)	TTS (NM_172685)	46137.0	NM_172685	229731.0	Mm.33574	NM_172685	ENSMUSG00000040322	Slc25a24	2610016M12Rik	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121106726-2	chr8	121106226	121107226	+	794.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172761, intron 2 of 7)	intron (NM_172761, intron 2 of 7)	1653.0	NM_172761	234814.0	Mm.31690	NM_172761	ENSMUSG00000031816	Mthfsd	AW049977|BC052066|C920004D05	methenyltetrahydrofolate synthetase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-17337224-4	chr19	17336724	17337724	+	794.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	2281.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	28.0	65.5	29.0	25.5	32.0	17.0
Merged-chr19-26749268-3	chr19	26748747	26749747	+	794.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026003, intron 1 of 8)	intron (NM_026003, intron 1 of 8)	844.0	NM_026003	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81291231-2	chr10	81290731	81291731	+	794.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013769)	promoter-TSS (NM_013769)	36.0	NM_013769	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24275105-4	chr16	24274593	24275593	+	794.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118257.0	NM_178665	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128420142-2	chr2	128419642	128420642	+	794.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	MER44B|DNA|TcMar-Tigger	9209.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	14.0	18.0	19.5	2.0	6.5	15.0
Merged-chr2-122407723-6	chr2	122407176	122408176	+	794.236084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-33144.0	NM_172980	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	10.0	36.0	18.5	8.5	52.0	38.0
Merged-chr8-70712580-3	chr8	70712106	70713106	+	794.228577	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5937.0	NM_001195253	100502950.0	Mm.52981	NM_001195253	ENSMUSG00000095026	Gm3336	100041434|2410018E23Rik	predicted gene 3336	protein-coding	0.0	4.0	1.0	1.5	0.0	0.0
Merged-chr11-108425685-3	chr11	108425199	108426199	+	794.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029606, intron 1 of 27)	CpG	433.0	NM_029606	76380.0	Mm.344071	NM_029586	ENSMUSG00000020728	Cep112	1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco	centrosomal protein 112	protein-coding	12.0	24.0	14.0	1.5	6.5	7.5
Merged-chr10-96280422-3	chr10	96279923	96280923	+	794.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54216.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-140959349-3	chr7	140958852	140959852	+	794.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3391.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35235490-4	chr7	35234997	35235997	+	794.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20152.0	NM_001024707	435965.0	Mm.333783	NM_001024707	ENSMUSG00000001802	Lrp3	-	low density lipoprotein receptor-related protein 3	protein-coding	29.5	99.0	81.5	61.5	124.0	89.5
Merged-chr16-43802240-3	chr16	43801746	43802746	+	794.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007877, intron 2 of 6)	intron (NM_007877, intron 2 of 6)	40025.0	NM_007877	13490.0	Mm.439735	NM_007877	ENSMUSG00000022705	Drd3	D3R	dopamine receptor D3	protein-coding	4.0	0.5	1.0	4.0	0.0	3.0
Merged-chr12-56429587-3	chr12	56429077	56430077	+	794.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83683.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102002993-3	chr15	102002509	102003509	+	794.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031170, intron 1 of 8)	intron (NM_031170, intron 1 of 8)	1333.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80154563-2	chr12	80154063	80155063	+	794.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-21719.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77446060-2	chr11	77445560	77446560	+	794.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 13 of 14)	intron (NM_177710, intron 13 of 14)	-17853.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106295409-5	chr9	106294787	106295787	+	794.133362	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 7 of 10)	intron (NM_027354, intron 7 of 10)	14226.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	7.5	4.5	12.0	3.5	4.5	5.0
Merged-chr5-25526189-3	chr5	25525646	25526646	+	794.133301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3872.0	NR_027388	73571.0	Mm.105263	NR_027388	ENSMUSG00000101856	1700096K18Rik	-	RIKEN cDNA 1700096K18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32742337-4	chr5	32741801	32742801	+	794.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001347332, exon 3 of 9)	5' UTR (NM_001347332, exon 3 of 9)	4041.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0.0	22.5	2.5	2.0	0.0	1.0
Merged-chr10-99166086-5	chr10	99165459	99166459	+	794.119995	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	57824.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53123662-3	chr4	53123165	53124165	+	794.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	36230.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32690110-3	chr5	32689606	32690606	+	794.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56236.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15774888-3	chr17	15774362	15775362	+	794.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	51724.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	1.0	1.0	11.5	4.5	5.5	1.0
Merged-chr1-86529779-2	chr1	86529279	86530279	+	794.099976	f1_balb.idr|f1_c57bl6.idr	exon (NM_001360830, exon 4 of 5)	exon (NM_001360830, exon 4 of 5)	3222.0	NM_001360830	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131047472-2	chr2	131046972	131047972	+	794.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR22_Mur|LTR|ERVK	-4384.0	NM_001136063	14588.0	Mm.198399	NM_020014	ENSMUSG00000027316	Gfra4	AW060733|G630015H18Rik	glial cell line derived neurotrophic factor family receptor alpha 4	protein-coding	3.0	5.5	6.0	11.5	1.5	12.0
Merged-chr17-47766165-4	chr17	47765656	47766656	+	794.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-19588.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	19.0	66.5	44.0	21.5	24.0	12.5
Merged-chr11-116618548-3	chr11	116618048	116619048	+	794.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	5704.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-104387544-4	chr11	104387039	104388039	+	794.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 3 of 14)	intron (NM_001359634, intron 3 of 14)	54752.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45079907-3	chr19	45079432	45080432	+	794.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001362398)	TTS (NM_001362398)	3845.0	NM_001362397	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64088896-3	chr1	64088387	64089387	+	794.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	32502.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16932143-4	chr7	16931706	16932706	+	794.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8174.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50532153-4	chr9	50531647	50532647	+	794.012512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133217)	TTS (NM_133217)	-3506.0	NM_011220	19286.0	Mm.35856	NM_011220	ENSMUSG00000032067	Pts	PTPS	6-pyruvoyl-tetrahydropterin synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156686686-1	chr2	156686186	156687186	+	794.0	f0_balb.idr	intron (NM_146128, intron 2 of 12)	intron (NM_146128, intron 2 of 12)	34223.0	NR_040505	74846.0	Mm.443946	NR_040505	ENSMUSG00000086638	4930405A21Rik	-	RIKEN cDNA 4930405A21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116033797-2	chr3	116033297	116034297	+	794.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25500.0	NM_001163514	58193.0	Mm.41739	NM_021388	ENSMUSG00000027963	Extl2	3000001D04Rik|AW146439	exostoses (multiple)-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99980866-2	chr7	99980366	99981366	+	794.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175388)	promoter-TSS (NM_175388)	-408.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99590831-3	chr15	99590337	99591337	+	794.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009701)	promoter-TSS (NM_009701)	-191.0	NM_009701	11830.0	Mm.45580	NM_009701	ENSMUSG00000044217	Aqp5	-	aquaporin 5	protein-coding	0.0	6.5	2.5	0.0	0.0	1.5
Merged-chr4-58304747-1	chr4	58304247	58305247	+	794.0	f0_balb.idr	intron (NM_001037130, intron 5 of 12)	intron (NM_001037130, intron 5 of 12)	18785.0	NM_010944	18198.0	Mm.16148	NM_010944	ENSMUSG00000057280	Musk	Mdk4|Mlk|Nsk1|Nsk2|Nsk3	muscle, skeletal, receptor tyrosine kinase	protein-coding	0.0	0.0	1.5	0.0	0.0	3.5
Merged-chr15-98852201-2	chr15	98851701	98852701	+	794.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033276, exon 32 of 55)	exon (NM_001033276, exon 32 of 55)	19004.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29712281-2	chr6	29711781	29712781	+	794.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301407, intron 4 of 7)	intron (NM_001301407, intron 4 of 7)	18067.0	NM_146173	232670.0	Mm.225289	NM_146173	ENSMUSG00000001763	Tspan33	1300010A20Rik|Pen	tetraspanin 33	protein-coding	12.0	0.0	0.0	4.0	1.0	0.0
Merged-chr15-85669731-2	chr15	85669190	85670190	+	794.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34083.0	NR_110483	102800312.0	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	16.0	28.5	10.5	8.0	17.5	18.0
Merged-chr1-128811061-1	chr1	128810561	128811561	+	794.0	f0_balb.idr	Intergenic	B4A|SINE|B4	-218762.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111647479-1	chr13	111646979	111647979	+	794.0	f0_balb.idr	Intergenic	Intergenic	-38699.0	NM_172593	218613.0	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-30622364-3	chr15	30621867	30622867	+	794.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 5 of 21)	intron (NM_001355502, intron 5 of 21)	-416759.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	1.0	1.0	1.5	0.5	0.0	4.0
Merged-chr3-96599813-1	chr3	96599313	96600313	+	794.0	f1_c57bl6.idr	TTS (NM_001024851)	TTS (NM_001024851)	-1320.0	NM_001163170	280411.0	Mm.482147	NM_001163170	ENSMUSG00000049288	Lix1l	D130027M04Rik	Lix1-like	protein-coding	0.0	2.0	0.0	0.0	0.0	2.0
Merged-chr4-116789139-4	chr4	116788643	116789643	+	794.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146151, intron 4 of 10)	intron (NM_146151, intron 4 of 10)	18416.0	NM_026654	68276.0	Mm.30534	NM_026654	ENSMUSG00000028688	Toe1	4930584N22Rik|4933424D16Rik|AI413517	target of EGR1, member 1 (nuclear)	protein-coding	3.5	0.0	0.0	1.5	2.0	0.0
Merged-chr7-96879051-1	chr7	96878551	96879551	+	794.0	f0_balb.idr	intron (NM_011858, intron 27 of 32)	intron (NM_011858, intron 27 of 32)	-72476.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-5256904-1	chr10	5256404	5257404	+	794.0	f0_balb.idr	exon (NM_001347732, exon 64 of 146)	exon (NM_001347732, exon 64 of 146)	-62197.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	2.5	0.0	0.0	5.0	0.0	0.0
Merged-chr1-155912094-1	chr1	155911594	155912594	+	794.0	f0_balb.idr	intron (NM_001039184, intron 17 of 37)	intron (NM_001039184, intron 17 of 37)	61161.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	22.0	6.5	8.0	4.0	22.0	6.0
Merged-chr4-33240577-2	chr4	33240077	33241077	+	794.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	8210.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-24378695-1	chr1	24378195	24379195	+	794.0	f0_balb.idr	intron (NM_007733, intron 15 of 50)	intron (NM_007733, intron 15 of 50)	183492.0	NM_001290691	12839.0	Mm.154662	NM_007740	ENSMUSG00000026147	Col9a1	Col9a-1	collagen, type IX, alpha 1	protein-coding	0.0	2.5	4.0	0.0	2.5	5.0
Merged-chr5-31037592-1	chr5	31037092	31038092	+	794.0	f1_c57bl6.idr	intron (NM_001360022, intron 15 of 17)	intron (NM_001360022, intron 15 of 17)	10487.0	NM_177870	330064.0	Mm.205463	NM_177870	ENSMUSG00000006641	Slc5a6	E430023I20	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	protein-coding	0.5	1.0	0.0	0.0	0.0	2.5
Merged-chr2-4603633-2	chr2	4603133	4604133	+	794.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347086, exon 22 of 25)	exon (NM_001347086, exon 22 of 25)	43879.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38348444-2	chr2	38347944	38348944	+	794.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290646, intron 1 of 4)	CpG	-2864.0	NM_010710	16870.0	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141209660-2	chr7	141209160	141210160	+	794.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028050)	TTS (NM_028050)	4420.0	NM_001347565	72000.0	Mm.334314	NM_028050	ENSMUSG00000025500	Lmntd2	1600016N20Rik	lamin tail domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59222459-1	chr4	59221959	59222959	+	794.0	f0_balb.idr	3' UTR (NM_011673, exon 9 of 9)	3' UTR (NM_011673, exon 9 of 9)	32909.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	20.0	32.5	14.5	24.0	26.5	7.0
Merged-chr4-103110152-4	chr4	103109667	103110667	+	794.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146254, intron 1 of 16)	ID_B1|SINE|B4	4132.0	NM_146254	242584.0	Mm.374877	NM_146254	ENSMUSG00000035126	Wdr78	BC028975	WD repeat domain 78	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170132862-2	chr2	170132362	170133362	+	794.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159683, intron 1 of 6)	intron (NM_001159683, intron 1 of 6)	-1642.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34573093-2	chr19	34572593	34573593	+	794.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001355262, exon 3 of 3)	exon (NM_001355262, exon 3 of 3)	-10436.0	NM_010501	15959.0	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46052475-2	chr11	46051975	46052975	+	794.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-2027.0	NM_001291890	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-80242811-1	chr8	80242311	80243311	+	794.0	f0_balb.idr	Intergenic	Intergenic	-184803.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-19921688-2	chr11	19921151	19922151	+	794.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-2791.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	1.5	13.0	3.0	0.0	6.0	4.0
Merged-chr8-70584843-2	chr8	70584251	70585251	+	794.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 6 of 11)	intron (NM_007924, intron 6 of 11)	-9730.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	0.0	0.0	0.5	0.5	0.0	0.0
Merged-chr11-69622852-2	chr11	69622352	69623352	+	794.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026991, intron 3 of 5)	intron (NM_026991, intron 3 of 5)	800.0	NM_001356468	69215.0	Mm.340410	NM_026991	ENSMUSG00000069835	Sat2	2610016A03Rik|SSAT-2|SSAT2	spermidine/spermine N1-acetyl transferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-88908704-2	chr11	88908204	88909204	+	794.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045955, intron 2 of 4)	B3|SINE|B2	2776.0	NR_045955	73921.0	Mm.439148	NR_045955	ENSMUSG00000087338	Scpep1os	4930405P13Rik	serine carboxypeptidase 1, opposite strand	ncRNA	7.0	1.5	0.0	0.0	5.0	2.5
Merged-chr13-60686140-2	chr13	60685646	60686646	+	794.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	83935.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.0	0.5	0.0	4.0	3.5	1.0
Merged-chr10-80625276-2	chr10	80624776	80625776	+	794.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134002, intron 1 of 10)	intron (NM_134002, intron 1 of 10)	2496.0	NM_134002	103236.0	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-38988664-3	chr1	38988144	38989144	+	794.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026850, intron 1 of 5)	intron (NM_026850, intron 1 of 5)	830.0	NM_026850	68833.0	Mm.28121	NM_026850	ENSMUSG00000026078	Pdcl3	1110061A19Rik|C80025|Viaf1	phosducin-like 3	protein-coding	8.5	29.0	15.0	8.5	40.5	29.0
Merged-chr11-119945281-2	chr11	119944781	119945781	+	794.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037754, intron 1 of 13)	intron (NM_001037754, intron 1 of 13)	2189.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89340729-4	chr3	89340257	89341257	+	794.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037722, intron 20 of 22)	intron (NM_001037722, intron 20 of 22)	-2729.0	NM_007910	13639.0	Mm.16332	NM_007910	ENSMUSG00000028040	Efna4	EFL-4|Epl4|LERK-4	ephrin A4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127020667-2	chr7	127020167	127021167	+	794.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001102563, intron 1 of 3)	intron (NM_001102563, intron 1 of 3)	544.0	NM_001102563	69017.0	Mm.392047	NM_001102563	ENSMUSG00000045114	Prrt2	1500031I19Rik|AI195361|DSPB3	proline-rich transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-128981847-2	chr5	128981318	128982318	+	794.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8418.0	NM_001359022	13852.0	Mm.260716	NM_007941	ENSMUSG00000029428	Stx2	AW538950|Epim|G1-536-1|Syn-2|repro34	syntaxin 2	protein-coding	1.0	1.5	1.0	0.0	1.0	0.0
Merged-chr2-122570316-1	chr2	122569816	122570816	+	794.0	f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	40961.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	79.5	106.0	58.5	119.0	180.0	170.5
Merged-chr7-73619221-1	chr7	73618721	73619721	+	794.0	f0_balb.idr	Intergenic	Intergenic	-60826.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10040630-2	chr17	10040130	10041130	+	794.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-264764.0	NR_045433	71092.0	Mm.243827	NR_045433		4930452A19Rik	4933424P20Rik	RIKEN cDNA 4930452A19 gene	ncRNA	0.0	4.5	5.0	0.5	12.0	2.0
Merged-chr6-124884991-2	chr6	124884491	124885491	+	794.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013488, intron 1 of 9)	intron (NM_013488, intron 1 of 9)	3209.0	NM_013488	12504.0	Mm.2209	NM_013488	ENSMUSG00000023274	Cd4	L3T4|Ly-4	CD4 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113470351-4	chr13	113469887	113470887	+	794.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 3 of 6)	(TC)n|Simple_repeat|Simple_repeat	32457.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21162776-2	chr9	21162276	21163276	+	794.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2938.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-50760712-2	chr4	50760212	50761212	+	794.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-455966.0	NM_001162865	74914.0	Mm.159368	NM_001162865	ENSMUSG00000039555	Cylc2	4930488P18Rik	cylicin, basic protein of sperm head cytoskeleton 2	protein-coding	6.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40665182-1	chr19	40664682	40665682	+	794.0	f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	B1_Mus2|SINE|Alu	5412.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	6.0	17.0	13.5	11.5	37.0	9.5
Merged-chr16-44002927-2	chr16	44002427	44003427	+	794.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359085, intron 8 of 16)	intron (NM_001359085, intron 8 of 16)	-10925.0	NR_037302	100499519.0		NR_037302	ENSMUSG00000093912	Mir3470b	mmu-mir-3470b	microRNA 3470b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135682962-2	chr5	135682462	135683462	+	794.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6183.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	2.5	0.0	0.0	0.0	1.0	0.0
Merged-chr8-120633831-2	chr8	120633331	120634331	+	794.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308449, intron 1 of 3)	CpG	551.0	NM_197988	68918.0	Mm.473736	NM_197988	ENSMUSG00000043687	1190005I06Rik	-	RIKEN cDNA 1190005I06 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99710651-2	chr7	99710151	99711151	+	794.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175316, intron 1 of 13)	intron (NM_175316, intron 1 of 13)	689.0	NM_175316	101488.0	Mm.11249	NM_175316	ENSMUSG00000030737	Slco2b1	AI060904|AI852653|OATP-B|Slc21a9	solute carrier organic anion transporter family, member 2b1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23748698-2	chr18	23748198	23749198	+	794.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3607.0	NR_126066	100502834.0	Mm.213614	NR_126066	ENSMUSG00000086287	Gm15972	-	predicted gene 15972	ncRNA	0.0	0.5	3.5	0.0	8.0	0.5
Merged-chr17-87612225-1	chr17	87611725	87612725	+	794.0	f1_c57bl6.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-23754.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	1.0	2.0	0.5	8.0	0.5	0.0
Merged-chr11-101610564-1	chr11	101610064	101611064	+	794.0	f0_balb.idr	promoter-TSS (NM_001256318)	promoter-TSS (NM_001256318)	-136.0	NM_001256318	666331.0	Mm.303457	NM_001256318		LOC666331	-	uncharacterized LOC666331	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95233400-2	chr10	95232900	95233900	+	794.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	-87575.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-131237928-4	chr3	131237443	131238443	+	793.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008212, intron 6 of 7)	intron (NM_008212, intron 6 of 7)	34158.0	NM_008212	15107.0	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91184548-3	chr12	91184009	91185009	+	793.972229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181815, intron 20 of 25)	intron (NM_181815, intron 20 of 25)	74280.0	NR_030473	735273.0		NR_030473	ENSMUSG00000076118	Mir669c	Mirn669c|Mirn669c-1	microRNA 669c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74501006-4	chr11	74500504	74501504	+	793.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	89154.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142356286-3	chr7	142355791	142356791	+	793.955566	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347541, intron 2 of 2)	intron (NM_001347541, intron 2 of 2)	15968.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	3.5	0.0	1.5	5.0	0.0	0.0
Merged-chr3-107111002-3	chr3	107110508	107111508	+	793.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008417, exon 3 of 3)	3' UTR (NM_008417, exon 3 of 3)	9441.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	15.0	17.5	22.0	9.5	13.0	16.0
Merged-chr10-96294911-4	chr10	96294421	96295421	+	793.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	68714.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-9893719-4	chr10	9893220	9894220	+	793.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081344, intron 2 of 25)	intron (NM_001081344, intron 2 of 25)	7320.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	6.0	9.0	6.5	0.0	2.5	5.5
Merged-chr1-16079243-4	chr1	16078735	16079735	+	793.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305227, intron 3 of 5)	intron (NM_001305227, intron 3 of 5)	14090.0	NM_001243238	75799.0	Mm.78557	NM_001243238	ENSMUSG00000067795	4930444P10Rik	-	RIKEN cDNA 4930444P10 gene	protein-coding	7.0	0.0	0.0	5.5	2.5	0.0
Merged-chr1-176834155-4	chr1	176833642	176834642	+	793.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_037996)	TTS (NR_037996)	1991.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	28.5	62.5	29.0	40.0	40.5	22.5
Merged-chr18-56675608-3	chr18	56675088	56676088	+	793.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32225.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-166254098-3	chr1	166253666	166254666	+	793.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164528)	promoter-TSS (NM_001164528)	27.0	NM_001357428	100039795.0	Mm.101743	NM_001164528	ENSMUSG00000040612	Ildr2	2810478N18Rik|3110063L10Rik|AI852300|D1Ertd471e|Dbsm1|Ll	immunoglobulin-like domain containing receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109439289-3	chr4	109438778	109439778	+	793.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145948, intron 13 of 17)	ORR1D2|LTR|ERVL-MaLR	23631.0	NM_001145948	230603.0	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60368064-4	chr10	60367546	60368546	+	793.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159572, intron 5 of 6)	intron (NM_001159572, intron 5 of 6)	21195.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-110953405-4	chr13	110952842	110953842	+	793.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-49496.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53050341-2	chr4	53049841	53050841	+	793.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_013454, exon 36 of 50)	exon (NM_013454, exon 36 of 50)	38461.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87102625-2	chr17	87102134	87103134	+	793.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5045.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	0.0	15.5	11.0	0.0	1.0	1.0
Merged-chr7-130859064-6	chr7	130858654	130859654	+	793.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6570.0	NM_133942	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83123110-3	chr17	83122604	83123604	+	793.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44879.0	NR_045094	100503434.0	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-47867270-3	chr8	47866767	47867767	+	793.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133791, intron 11 of 22)	intron (NM_133791, intron 11 of 22)	42785.0	NM_029383	75677.0	Mm.390033	NM_029383	ENSMUSG00000038064	Cldn22	2210404A22Rik|5330431C14Rik|9530051B05Rik	claudin 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108699250-3	chr8	108698759	108699759	+	793.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15385.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126645860-3	chr7	126645360	126646360	+	793.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3449.0	NM_029339	75565.0	Mm.45686	NM_029339	ENSMUSG00000030714	Sgf29	1700023O11Rik|9530025I05Rik|Ccdc101	SAGA complex associated factor 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150642358-2	chr4	150641858	150642858	+	793.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355737, intron 4 of 8)	intron (NM_001355737, intron 4 of 8)	9816.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153557041-2	chr2	153556541	153557541	+	793.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27070.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24281191-3	chr13	24280666	24281666	+	793.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311122)	promoter-TSS (NM_001311122)	-376.0	NM_026825	68732.0	Mm.211047	NM_026825	ENSMUSG00000021338	Carmil1	1110037D04Rik|AI425970|CARMIL|CARML1|D130057M20|Lrrc16|Lrrc16a	capping protein regulator and myosin 1 linker 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86689513-4	chr4	86689003	86690003	+	793.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19444.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	65.5	125.5	98.0	65.0	122.0	98.0
Merged-chr19-44280952-1	chr19	44280452	44281452	+	793.799988	f0_balb.idr	Intergenic	Intergenic	-12724.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	9.0	8.0	1.5	8.0	1.5	2.5
Merged-chr6-134043798-4	chr6	134043302	134044302	+	793.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	8102.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	1.0	20.0	13.5	7.0	32.0	8.5
Merged-chr12-78906902-3	chr12	78906403	78907403	+	793.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013738)	promoter-TSS (NM_013738)	35.0	NM_013738	27260.0	Mm.103380	NM_013738	ENSMUSG00000021118	Plek2	-	pleckstrin 2	protein-coding	0.0	0.0	0.0	5.0	5.0	10.0
Merged-chr3-19895672-3	chr3	19895125	19896125	+	793.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027985, exon 1 of 1)	non-coding (NR_027985, exon 1 of 1)	754.0	NR_027985	70808.0	Mm.427103	NR_027985	ENSMUSG00000048106	4632415L05Rik	AI662792	RRS1 ribosome biogenesis regulator homolog pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79368090-2	chr2	79367590	79368590	+	793.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048176, intron 3 of 12)	intron (NM_001048176, intron 3 of 12)	60898.0	NM_001048176	228094.0	Mm.440704	NM_001033295	ENSMUSG00000075256	Cerkl	Gm1958|Rp26	ceramide kinase-like	protein-coding	2.0	0.0	2.5	7.5	0.0	3.0
Merged-chr16-30415435-2	chr16	30414977	30415977	+	793.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-26947.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	14.5	65.5	44.0	20.5	22.5	37.5
Merged-chr16-25050824-2	chr16	25050324	25051324	+	793.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8815.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-11725681-2	chr17	11725190	11726190	+	793.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_016694, intron 7 of 11)	intron (NM_016694, intron 7 of 11)	157499.0	NR_045808	52027.0	Mm.442257	NR_045808		D17Ertd648e	-	DNA segment, Chr 17, ERATO Doi 648, expressed	ncRNA	0.0	2.5	1.0	0.0	2.5	1.0
Merged-chr2-164442572-2	chr2	164442047	164443047	+	793.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011521, intron 1 of 4)	intron (NM_011521, intron 1 of 4)	641.0	NM_011521	20971.0	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.0	1.0	0.0	2.0	0.0	2.0
Merged-chr10-96215242-2	chr10	96214742	96215742	+	793.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10965.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45191956-4	chr2	45191452	45192452	+	793.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74510.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118764669-2	chr2	118764145	118765145	+	793.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1984.0	NM_001001982	214239.0	Mm.379342	NM_001001982	ENSMUSG00000045838	A430105I19Rik	Ccdc9b|Gm353	RIKEN cDNA A430105I19 gene	protein-coding	0.0	0.5	1.0	0.0	0.0	4.0
Merged-chr2-26130193-4	chr2	26129715	26130715	+	793.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AmnSINE1|SINE|Deu	-7404.0	NM_026495	67991.0	Mm.131074	NM_026495	ENSMUSG00000026932	Nacc2	0610020I02Rik|AI448087|Btbd14a|C030048H19Rik	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74249775-2	chr1	74249275	74250275	+	793.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 4 of 10)	B1F1|SINE|Alu	13258.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111994000-4	chr9	111993492	111994492	+	793.733337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	124719.0	NR_029823	723815.0		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-36237237-3	chr2	36236778	36237778	+	793.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008969, exon 3 of 11)	exon (NM_008969, exon 3 of 11)	6852.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76997482-3	chr11	76996966	76997966	+	793.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1131.0	NM_010484	15567.0	Mm.300318	NM_010484	ENSMUSG00000020838	Slc6a4	5-HTT|AI323329|Htt|Sert	solute carrier family 6 (neurotransmitter transporter, serotonin), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19279044-3	chr7	19278483	19279483	+	793.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177691, intron 1 of 4)	intron (NM_177691, intron 1 of 4)	1066.0	NM_177691	232941.0	Mm.134068	NM_177691	ENSMUSG00000030402	Ppm1n	A930002H20|C79127	protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-89939638-3	chr1	89939126	89940126	+	793.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8450.0	NM_010262	14472.0	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35244372-3	chr17	35243934	35244934	+	793.711121	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105941)	TTS (NR_105941)	359.0	NR_105941	102465589.0		NR_105941	ENSMUSG00000098499	Mir6975	Gm27693|mmu-mir-6975	microRNA 6975	ncRNA	16.0	20.0	18.0	6.5	20.0	48.0
Merged-chr6-142711200-7	chr6	142710746	142711746	+	793.676208	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CCCCCT)n|Simple_repeat|Simple_repeat	-8972.0	NM_001310143	20928.0	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-162838097-1	chr1	162837597	162838597	+	793.666687	f0_balb.idr	intron (NM_010231, intron 5 of 8)	intron (NM_010231, intron 5 of 8)	21903.0	NM_001330291	14261.0	Mm.976	NM_010231	ENSMUSG00000040181	Fmo1	-	flavin containing monooxygenase 1	protein-coding	1.0	0.0	2.5	7.0	3.5	12.5
Merged-chr5-125462444-1	chr5	125461944	125462944	+	793.666687	f1_balb.idr	Intergenic	Intergenic	-13429.0	NM_030210	78894.0	Mm.431573	NM_030210	ENSMUSG00000029482	Aacs	2210408B16Rik|SUR5	acetoacetyl-CoA synthetase	protein-coding	7.0	3.5	5.0	2.0	6.0	2.5
Merged-chr7-114439924-3	chr7	114439417	114440417	+	793.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011055, intron 1 of 15)	intron (NM_011055, intron 1 of 15)	24663.0	NM_011055	18576.0	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	0.0	6.0	2.0	0.0	6.0	2.0
Merged-chr15-100590721-3	chr15	100590218	100591218	+	793.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304965, intron 3 of 10)	RMER6B|LTR|ERVK	-4353.0	NM_010127	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	7.0	15.0	8.5	5.0	10.5	7.0
Merged-chr2-164824268-2	chr2	164823768	164824768	+	793.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_028028, intron 1 of 1)	intron (NM_028028, intron 1 of 1)	1582.0	NM_028028	71971.0	Mm.161149	NM_028028	ENSMUSG00000017764	Zswim1	2410003H12Rik|AI850991|BB046916	zinc finger SWIM-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39301701-3	chr6	39301206	39302206	+	793.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75729.0	NR_155076	72144.0	Mm.482167	NM_028123	ENSMUSG00000029924	Slc37a3	2610507O21Rik|AU044904	solute carrier family 37 (glycerol-3-phosphate transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70932151-1	chr14	70931651	70932651	+	793.666687	f0_balb.idr	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	42044.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	7.0	4.5	11.5	12.5	36.0	11.5
Merged-chr18-53257084-2	chr18	53256584	53257584	+	793.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	B1F|SINE|Alu	11422.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88280260-2	chr1	88279760	88280760	+	793.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2681.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127310119-4	chr10	127309704	127310704	+	793.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003913, intron 3 of 20)	intron (NM_001003913, intron 3 of 20)	1582.0	NM_001003913	216443.0	Mm.28173	NM_001003913	ENSMUSG00000040354	Mars	Metrs|Mtrns	methionine-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38346556-4	chr2	38346070	38347070	+	793.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290646, intron 1 of 4)	intron (NM_001290646, intron 1 of 4)	-4738.0	NM_010710	16870.0	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32611068-4	chr5	32610547	32611547	+	793.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205133)	promoter-TSS (NM_001205133)	-124.0	NM_001205133	22612.0	Mm.4558	NM_009535	ENSMUSG00000014932	Yes1	Yes|p61-Yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding	7.5	1.5	2.5	0.5	0.0	0.5
Merged-chr8-104596404-2	chr8	104595904	104596904	+	793.599976	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001024606, exon 2 of 2)	3' UTR (NM_001024606, exon 2 of 2)	4936.0	NM_001024606	382051.0	Mm.290750	NM_001024606	ENSMUSG00000048371	Pdp2	4833426J09Rik|Gm1705|mKIAA1348	pyruvate dehyrogenase phosphatase catalytic subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152140632-4	chr4	152140114	152141114	+	793.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207687, intron 2 of 15)	intron (NM_207687, intron 2 of 15)	-4289.0	NM_207690	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40766214-2	chr9	40765787	40766787	+	793.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 2 of 6)	RSINE1|SINE|B4	-34986.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	35.0	145.5	80.5	21.0	117.5	78.0
Merged-chr8-126797831-4	chr8	126797328	126798328	+	793.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-51192.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21198774-3	chr16	21198268	21199268	+	793.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6027.0	NM_010143	13845.0	Mm.6972	NM_010143	ENSMUSG00000005958	Ephb3	AW456895|Cek10|Etk2|HEK2|MDK5|Sek4|Tyro6	Eph receptor B3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120493811-6	chr6	120493269	120494269	+	793.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033567)	promoter-TSS (NM_033567)	38.0	NM_033567	94047.0	Mm.23088	NM_033567	ENSMUSG00000094626	Tmem121b	AW048664|Cecr6	transmembrane protein 121B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30834557-3	chr13	30834063	30835063	+	793.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025588, intron 23 of 27)	intron (NM_025588, intron 23 of 27)	85330.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	13.0	6.5	8.0	4.0	2.5	7.5
Merged-chr15-91165207-3	chr15	91164713	91165713	+	793.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011994, intron 6 of 9)	MER20|DNA|hAT-Charlie	26794.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-8546454-3	chr6	8545956	8546956	+	793.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286729, intron 2 of 7)	intron (NM_001286729, intron 2 of 7)	26398.0	NM_001286729	170772.0	Mm.210787	NM_133236	ENSMUSG00000029638	Glcci1	2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1	glucocorticoid induced transcript 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27230219-4	chr14	27229691	27230691	+	793.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 3 of 12)	MLT1N2|LTR|ERVL-MaLR	-7819.0	NM_027871	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142403033-2	chr7	142402533	142403533	+	793.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-15163.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	3.0	6.0	7.0	0.5	5.0	12.0
Merged-chr11-70004751-2	chr11	70004251	70005251	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007888, intron 1 of 14)	B1_Mus1|SINE|Alu	4125.0	NM_007888	13543.0	Mm.5114	NM_007888	ENSMUSG00000020888	Dvl2	-	dishevelled segment polarity protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114812320-2	chr11	114811820	114812820	+	793.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	13396.0	NM_181749	217302.0	Mm.269127	NM_181749	ENSMUSG00000034677	Gpr142	PGR2	G protein-coupled receptor 142	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79128667-2	chr3	79128167	79129167	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001099624, intron 1 of 23)	intron (NM_001099624, intron 1 of 23)	16220.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-28674863-1	chr12	28674363	28675363	+	793.5	f1_balb.idr	promoter-TSS (NM_134052)	promoter-TSS (NM_134052)	-344.0	NM_134052	104923.0	Mm.291504	NM_134052	ENSMUSG00000020629	Adi1	AL024210|Fe-ARD|MTCBP-1|Ni-ARD	acireductone dioxygenase 1	protein-coding	46.0	85.0	50.5	27.5	14.0	19.0
Merged-chr13-81801280-4	chr13	81800776	81801776	+	793.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18029.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116006374-2	chr3	116005874	116006874	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023214, intron 2 of 10)	intron (NM_023214, intron 2 of 10)	1032.0	NM_023214	66500.0	Mm.34550	NM_023214	ENSMUSG00000054414	Slc30a7	1810059J10Rik|2610034N15Rik|4833428C12Rik|AI467242|ZnT-7|ZnT7|Zntl2	solute carrier family 30 (zinc transporter), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-109088090-2	chr9	109087590	109088590	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025689, intron 1 of 3)	intron (NM_025689, intron 1 of 3)	5594.0	NM_025689	66658.0	Mm.128227	NM_025689	ENSMUSG00000025645	Ccdc51	5730568A12Rik|AI551049	coiled-coil domain containing 51	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr16-23281715-2	chr16	23281215	23282215	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-8755.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25569541-2	chr9	25569041	25570041	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 3 of 7)	RMER17C2|LTR|ERVK	87944.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-137899524-4	chr1	137899098	137900098	+	793.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66857.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105896203-2	chr3	105895703	105896703	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-8218.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	7.0	18.0	8.0	7.0	19.0	8.0
Merged-chr11-20216588-2	chr11	20216088	20217088	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 2 of 5)	B2_Mm2|SINE|B2	15176.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	3.0	21.5	11.0	2.5	29.5	13.0
Merged-chr5-28209989-2	chr5	28209489	28210489	+	793.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001310511, exon 1 of 3)	5' UTR (NM_001310511, exon 1 of 3)	179.0	NM_001310511	269637.0	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr13-43564344-2	chr13	43563844	43564844	+	793.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Zaphod|DNA|hAT-Tip100	-4153.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-90877925-2	chr8	90877430	90878430	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	49095.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	94.5	256.5	196.0	111.5	284.0	196.0
Merged-chr15-81887120-2	chr15	81886620	81887620	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080633, intron 1 of 17)	B2_Mm1a|SINE|B2	14657.0	NM_080633	11429.0	Mm.154581	NM_080633	ENSMUSG00000022477	Aco2	Aco-2|Aco3|D10Wsu183e	aconitase 2, mitochondrial	protein-coding	0.5	11.5	10.0	7.5	4.0	2.5
Merged-chr5-114921089-2	chr5	114920563	114921563	+	793.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-2177.0	NM_001359946	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0.0	0.0	6.5	0.0	0.0	1.5
Merged-chr2-142885614-2	chr2	142885114	142886114	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 1 of 26)	MLT1J1|LTR|ERVL-MaLR	15850.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-190927542-2	chr1	190927042	190928042	+	793.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357131)	promoter-TSS (NM_001357131)	-948.0	NM_001357132	52477.0	Mm.289914	NM_021421	ENSMUSG00000026634	Angel2	2610307I21Rik|5730410O10Rik|AI845692|D1Ertd396e|D1Ertd654e	angel homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17211607-2	chr16	17211107	17212107	+	793.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033338, exon 1 of 1)	exon (NM_001033338, exon 1 of 1)	3472.0	NM_001033338	239731.0	Mm.86671	NM_001033338	ENSMUSG00000071636	Rimbp3	Gm1759|Gm603|RIM-BP3|mKIAA1666	RIMS binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116181857-3	chr9	116181338	116182338	+	793.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-6475.0	NM_029575	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	3.5	21.0	18.0	13.5	52.0	41.5
Merged-chr11-118354797-2	chr11	118354297	118355297	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011594, intron 1 of 4)	intron (NM_011594, intron 1 of 4)	614.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94615749-2	chr16	94615249	94616249	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	RLTR11B|LTR|ERVK	4330.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-8227350-2	chr13	8226850	8227850	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_110345, intron 1 of 10)	intron (NR_110345, intron 1 of 10)	24484.0	NM_052977	94191.0	Mm.425794	NM_052977	ENSMUSG00000052551	Adarb2	Adar3|RED2	adenosine deaminase, RNA-specific, B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-43440397-2	chr15	43439897	43440897	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_046064, intron 1 of 2)	Lx4A|LINE|L1	36639.0	NR_046064	100038728.0	Mm.244168	NR_046064	ENSMUSG00000072592	Gm10373	-	predicted gene 10373	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-33137805-2	chr14	33137305	33138305	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146022, intron 11 of 58)	intron (NM_001146022, intron 11 of 58)	47261.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28002851-2	chr17	28002351	28003351	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 11 of 24)	intron (NM_181413, intron 11 of 24)	77733.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	2.0	0.0	0.5	5.0	2.5	0.5
Merged-chr3-122729821-2	chr3	122729321	122730321	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153422, intron 1 of 20)	CpG	663.0	NM_153422	242202.0	Mm.134911	NM_153422	ENSMUSG00000053965	Pde5a	Cgbpde|Cn5n|PDE5a2|Pde5|Pde5a1	phosphodiesterase 5A, cGMP-specific	protein-coding	0.0	0.0	0.0	0.0	0.0	11.0
Merged-chr19-7144060-2	chr19	7143560	7144560	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134147, intron 3 of 10)	intron (NM_134147, intron 3 of 10)	-38331.0	NM_201411	396184.0	Mm.386930	NM_201411	ENSMUSG00000047787	Flrt1	AW742165|D630040I23Rik	fibronectin leucine rich transmembrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-86991416-2	chr10	86990915	86991915	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 3 of 68)	B3|SINE|B2	16527.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	12.0	8.0	14.5	7.5	1.5	18.5
Merged-chr11-62643101-4	chr11	62642575	62643575	+	793.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198861, intron 1 of 3)	intron (NM_198861, intron 1 of 3)	4974.0	NM_001357955	192976.0	Mm.339972	NM_198861	ENSMUSG00000046417	Lrrc75a	Fam211a	leucine rich repeat containing 75A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-108300557-3	chr13	108300057	108301057	+	793.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15780.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	3.5	0.0	0.5	0.0	0.0	0.0
Merged-chr8-120596155-3	chr8	120595657	120596657	+	793.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7082.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69325388-2	chr11	69324888	69325888	+	793.416687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010599)	promoter-TSS (NM_010599)	-870.0	NM_010599	16499.0	Mm.232472	NM_010599	ENSMUSG00000018470	Kcnab3	C330022D06Rik|Kcnab4|mKv(beta)4	potassium voltage-gated channel, shaker-related subfamily, beta member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17798296-2	chr16	17797796	17798796	+	793.416687	f1_balb.idr|f1_c57bl6.idr	intron (NM_153790, intron 1 of 10)	CpG	1014.0	NM_153790	224024.0	Mm.194950	NM_153790	ENSMUSG00000012017	Scarf2	NSR1|SREC-II|SRECRP-1|Scatf1|Srec2|SrecII	scavenger receptor class F, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132157487-4	chr1	132156945	132157945	+	793.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17760.0	NM_008795	18557.0	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30963544-2	chr5	30963044	30964044	+	793.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3217.0	NM_016703	50907.0	Mm.272414	NM_016703	ENSMUSG00000045302	Preb	C85705	prolactin regulatory element binding	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78006799-4	chr9	78006307	78007307	+	793.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45151.0	NM_008103	14531.0	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1	protein-coding	0.0	2.0	1.5	1.0	1.5	2.5
Merged-chr6-128854245-4	chr6	128853748	128854748	+	793.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254946, intron 2 of 2)	intron (NM_001254946, intron 2 of 2)	-27933.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	2.5	3.0	5.5	0.0	0.0	3.0
Merged-chr4-101154364-2	chr4	101153864	101154864	+	793.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 24 of 24)	B2_Mm2|SINE|B2	85326.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73624900-2	chr15	73624400	73625400	+	793.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033219)	promoter-TSS (NM_001033219)	-156.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62654132-3	chr4	62653601	62654601	+	793.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134257, intron 10 of 15)	intron (NM_134257, intron 10 of 15)	-19873.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12413183-3	chr13	12412668	12413668	+	793.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144835, intron 17 of 44)	intron (NM_144835, intron 17 of 44)	17793.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-95747538-3	chr12	95747039	95748039	+	793.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	55313.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-91190267-3	chr15	91189798	91190798	+	793.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011994, intron 1 of 9)	intron (NM_011994, intron 1 of 9)	1709.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-59262317-4	chr3	59261819	59262819	+	793.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177855, exon 34 of 44)	exon (NM_177855, exon 34 of 44)	666.0	NM_027571	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	127.5	198.5	149.5	104.5	263.5	149.5
Merged-chr13-23696317-3	chr13	23695770	23696770	+	793.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010377, exon 1 of 1)	exon (NM_010377, exon 1 of 1)	459.0	NM_010377	107970.0	Mm.8048	NM_010377	ENSMUSG00000036211	Hist1h1t	H1.6|H1ft|H1t	histone cluster 1, H1t	protein-coding	17.0	36.0	21.0	10.0	4.5	8.5
Merged-chr9-94275159-4	chr9	94274645	94275645	+	793.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	262936.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	19.5	0.0	16.0	1.0	18.0	4.0
Merged-chr11-119089298-4	chr11	119088777	119089777	+	793.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3040.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181072323-4	chr2	181071812	181072812	+	793.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33135.0	NM_015730	11438.0	Mm.252369	NM_015730	ENSMUSG00000027577	Chrna4	Acra-4|Acra4|EBN1|ENFL1	cholinergic receptor, nicotinic, alpha polypeptide 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3428990-3	chr11	3428488	3429488	+	793.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110959, intron 1 of 5)	intron (NR_110959, intron 1 of 5)	-19750.0	NM_010718	16886.0	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45386950-3	chr9	45386447	45387447	+	793.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022004, intron 1 of 7)	intron (NM_022004, intron 1 of 7)	-12762.0	NR_028499	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0.0	1.5	2.0	6.5	0.0	6.5
Merged-chr15-81132829-4	chr15	81132324	81133324	+	793.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 1 of 13)	intron (NM_001082536, intron 1 of 13)	-27777.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0.0	0.0	0.0	0.0	2.5	1.5
Merged-chr2-52957666-2	chr2	52957166	52958166	+	793.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	99798.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32134228-4	chr2	32133700	32134700	+	793.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16948.0	NM_172661	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36802430-2	chr18	36801930	36802930	+	793.25	f1_balb.idr|f1_c57bl6.idr	TTS (NR_027885)	TTS (NR_027885)	667.0	NR_027885	378472.0	Mm.482379	NR_027885		Vaultrc5	Gm22653|Mvg1	vault RNA component 5	ncRNA	44.5	60.0	68.0	45.5	58.0	64.5
Merged-chr13-12809026-2	chr13	12808526	12809526	+	793.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-8947.0	NM_011118	18812.0	Mm.457984	NM_011118	ENSMUSG00000056457	Prl2c3	Ghd1|MRP-2|MRP-3|Mrpplf3|PLF-2|PLF-3|Plf2|Prl2c4|mrp/plf3	prolactin family 2, subfamily c, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51265408-6	chr11	51264949	51265949	+	793.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304744, intron 1 of 10)	intron (NM_001304744, intron 1 of 10)	-1787.0	NM_001358281	193286.0	Mm.80975	NM_177567	ENSMUSG00000045942	BC049762	4930503F14	cDNA sequence BC049762	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-14537311-2	chr10	14536805	14537805	+	793.25	f0_balb.idr|f0_c57.idr	intron (NM_001002268, intron 1 of 24)	RLTR40|LTR|ERVK	7731.0	NM_001002268	215798.0	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125478729-2	chr7	125478197	125479197	+	793.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360659, intron 2 of 7)	intron (NM_001360659, intron 2 of 7)	12845.0	NM_001360659	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	5.0	17.5	2.0	6.0	2.0	3.0
Merged-chr4-133451744-4	chr4	133451254	133452254	+	793.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28379.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	6.5	7.5	9.0	1.0	2.0	1.0
Merged-chr6-134614938-4	chr6	134614428	134615428	+	793.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026345, intron 3 of 3)	intron (NM_026345, intron 3 of 3)	17560.0	NM_026345	67729.0	Mm.57648	NM_026345	ENSMUSG00000032718	Mansc1	9130403P13Rik	MANSC domain containing 1	protein-coding	16.5	37.5	24.0	24.5	30.0	26.5
Merged-chr10-127385434-2	chr10	127384934	127385934	+	793.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359244, intron 1 of 25)	L2a|LINE|L2	4766.0	NM_001359244	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138303409-2	chr1	138302909	138303909	+	793.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29671.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50925644-4	chr14	50925102	50926102	+	793.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133676)	promoter-TSS (NM_133676)	653.0	NM_009687	11792.0	Mm.203	NM_009687	ENSMUSG00000035960	Apex1	APE|Apex|HAP1|Ref-1	apurinic/apyrimidinic endonuclease 1	protein-coding	27.5	63.5	49.0	26.5	67.0	42.5
Merged-chr10-42464428-3	chr10	42463937	42464937	+	793.233337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359297, intron 1 of 11)	L2c|LINE|L2	14128.0	NM_001359297	215951.0	Mm.89646	NM_145743	ENSMUSG00000038302	Afg1l	CG8520|Lace1	AFG1 like ATPase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-92320994-3	chr13	92320493	92321493	+	793.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311120, intron 8 of 23)	L1MA9|LINE|L1	-33790.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	8.0	0.0	0.5	7.0	0.0	2.0
Merged-chr7-81548956-3	chr7	81548430	81549430	+	793.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172904, exon 7 of 13)	exon (NM_172904, exon 7 of 13)	18051.0	NM_172904	244091.0	Mm.38773	NM_172904	ENSMUSG00000038663	Fsd2	9830160G03Rik|Spryd1	fibronectin type III and SPRY domain containing 2	protein-coding	23.5	25.0	29.0	9.5	5.5	7.0
Merged-chr11-79202702-3	chr11	79202216	79203216	+	793.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40308.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0.0	0.0	0.0	2.0	0.0	2.0
Merged-chr19-55934980-3	chr19	55934376	55935376	+	793.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39555.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121844795-3	chr3	121844287	121845287	+	793.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29485.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145161306-4	chr2	145160819	145161819	+	793.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6456.0	NM_001356497	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83600072-5	chr6	83599590	83600590	+	793.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27586.0	NM_001362080	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-78161563-4	chr18	78161042	78162042	+	793.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207651, intron 13 of 21)	intron (NM_207651, intron 13 of 21)	17630.0	NM_001110273	27411.0	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80704018-2	chr18	80703520	80704520	+	793.1999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 1 of 9)	intron (NM_198429, intron 1 of 9)	4153.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	10.5	10.5	5.0	10.5	17.5	9.5
Merged-chr3-115856627-2	chr3	115856127	115857127	+	793.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31432.0	NR_027894	68161.0	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	0.0	0.0	4.0	0.5	1.0	3.0
Merged-chr5-64425038-3	chr5	64424578	64425578	+	793.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0-int|LTR|ERVL-MaLR	42864.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-112930282-4	chr6	112929787	112930787	+	793.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080448, intron 1 of 21)	intron (NM_080448, intron 1 of 21)	16979.0	NM_080448	259302.0	Mm.236401	NM_080448	ENSMUSG00000030257	Srgap3	AI452337|Arhgap14|D130026O08Rik|Gbi|MEGAP|WRP|mKIAA0411	SLIT-ROBO Rho GTPase activating protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32493825-4	chr9	32493315	32494315	+	793.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	47637.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20203656-2	chr11	20203156	20204156	+	793.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 1 of 5)	B3A|SINE|B2	2244.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44384631-4	chr7	44384137	44385137	+	793.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016663, intron 1 of 10)	intron (NM_016663, intron 1 of 10)	511.0	NM_016663	20981.0	Mm.4824	NM_016663	ENSMUSG00000030731	Syt3	AI385753|sytIII	synaptotagmin III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156416574-2	chr2	156416073	156417073	+	793.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4336.0	NM_001291122	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	12.5	32.0	51.5	40.5	60.5	36.0
Merged-chr14-75876480-2	chr14	75875980	75876980	+	793.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28557.0	NR_028481	100303751.0	Mm.484707	NR_028481	ENSMUSG00000065147	Snora31	MBI-161	small nucleolar RNA, H/ACA box 31	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64749507-4	chr9	64748999	64749999	+	793.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-11743.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84855560-2	chr15	84855060	84856060	+	793.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356573)	promoter-TSS (NM_001356573)	-461.0	NM_001356573	271305.0	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-84606766-2	chr16	84606271	84607271	+	793.166626	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73018.0	NR_040537	78023.0	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	0.0	0.0	5.0	0.0	0.0	2.5
Merged-chr11-69324781-2	chr11	69324281	69325281	+	793.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172560)	promoter-TSS (NM_172560)	795.0	NM_001024206	245828.0	Mm.28073	NM_001024206	ENSMUSG00000049299	Trappc1	BET5|D11Ertd172e|MUM2	trafficking protein particle complex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88592154-4	chr3	88591659	88592659	+	793.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	12551.0	NM_025448	66256.0	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|SSR-beta|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	8.5	10.0	6.0	3.5	25.0	20.0
Merged-chr1-171703288-4	chr1	171702777	171703777	+	793.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007649, intron 3 of 3)	(TGGGGG)n|Simple_repeat|Simple_repeat	21285.0	NM_001360767	12506.0	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	0.0	4.0	3.5	0.0	3.0	0.0
Merged-chr13-110368719-4	chr13	110368219	110369219	+	793.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11547.0	NM_177713	238875.0	Mm.30533	NM_177713	ENSMUSG00000046006	Gapt	9830130M13Rik	Grb2-binding adaptor, transmembrane	protein-coding	3.0	0.0	1.0	0.0	3.0	0.0
Merged-chr5-114781074-4	chr5	114780573	114781573	+	793.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026718, intron 1 of 14)	intron (NM_026718, intron 1 of 14)	5933.0	NM_026718	68420.0	Mm.275554	NM_026718	ENSMUSG00000041870	Ankrd13a	1100001D10Rik|ANKRD13|AU046136	ankyrin repeat domain 13a	protein-coding	1.5	2.5	8.0	4.5	3.5	2.0
Merged-chr7-44430336-2	chr7	44429836	44430836	+	793.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12151.0	NM_198250	272381.0	Mm.44173	NM_198250	ENSMUSG00000047085	Lrrc4b	A830007M12|Lrig4	leucine rich repeat containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84852092-5	chr18	84851588	84852588	+	793.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348159, intron 1 of 5)	intron (NM_001348159, intron 1 of 5)	750.0	NM_001348159	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156014113-4	chr1	156013638	156014638	+	793.087524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160018, intron 8 of 9)	intron (NM_001160018, intron 8 of 9)	20679.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	25.5	72.0	54.5	18.5	100.5	33.5
Merged-chr10-8124297-3	chr10	8123794	8124794	+	793.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-168171.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21265615-4	chr11	21265125	21266125	+	793.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290628, intron 3 of 22)	intron (NM_001290628, intron 3 of 22)	26593.0	NM_001290628	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	3.5	13.0	2.5	0.0	15.5	4.5
Merged-chr9-64059549-3	chr9	64059054	64060054	+	793.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9725.0	NR_040713	68697.0	Mm.491042	NR_040713	ENSMUSG00000097036	1110036E04Rik	-	RIKEN cDNA 1110036E04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-115034185-3	chr7	115033683	115034683	+	793.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82909.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	2.0	2.5	1.5	0.0	6.0	4.5
Merged-chr2-128703701-3	chr2	128703190	128704190	+	793.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	Lx8|LINE|L1	4775.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132145263-6	chr2	132144835	132145835	+	793.049988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355430)	promoter-TSS (NM_001355430)	-15.0	NM_001355430	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76586368-2	chr11	76585868	76586868	+	793.016663	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-8629.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	73.5	71.0	76.5	44.5	76.0	59.5
Merged-chr17-26481150-3	chr17	26480630	26481630	+	793.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27342.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.0	7.0	3.0	0.5	14.0	0.5
Merged-chr17-73927584-2	chr17	73927084	73928084	+	793.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 6 of 35)	intron (NM_011723, intron 6 of 35)	22612.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106476756-2	chr9	106476301	106477301	+	793.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_145620)	promoter-TSS (NM_145620)	148.0	NM_001311150	235587.0	Mm.273659	NM_145619	ENSMUSG00000023249	Parp3	A930002C11Rik|AW990611|Adprt3|Adprtl3|PARP-3|pADPRT-3	poly (ADP-ribose) polymerase family, member 3	protein-coding	30.5	83.0	62.5	13.5	60.0	47.0
Merged-chr5-32937648-2	chr5	32937148	32938148	+	793.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001170567, exon 26 of 43)	exon (NM_001170567, exon 26 of 43)	73927.0	NM_001170567	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	13.0	19.0	31.0	35.0	15.5	16.5
Merged-chr19-4067542-2	chr19	4067042	4068042	+	793.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-8095.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21924719-2	chr9	21924219	21925219	+	793.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045606, intron 3 of 4)	B1_Mus1|SINE|Alu	2569.0	NM_001253869	235043.0	Mm.253329	NM_178577	ENSMUSG00000040883	Tmem205	-	transmembrane protein 205	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116022157-2	chr6	116021657	116022657	+	793.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177412, exon 6 of 6)	exon (NM_177412, exon 6 of 6)	-27152.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91010106-3	chr16	91009575	91010575	+	793.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001164483, exon 2 of 32)	exon (NM_001164483, exon 2 of 32)	1020.0	NM_001045515	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-41608654-2	chr3	41608154	41609154	+	793.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130184, intron 9 of 10)	intron (NM_001130184, intron 9 of 10)	43774.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	6.5	2.5	0.0	6.5	3.5	0.0
Merged-chr11-118239398-2	chr11	118238898	118239898	+	793.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	9194.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	4.0	13.0	4.0	4.0	12.5	4.0
Merged-chr4-140573845-1	chr4	140573345	140574345	+	793.0	f1_c57bl6.idr	intron (NM_001112723, intron 14 of 26)	intron (NM_001112723, intron 14 of 26)	74911.0	NM_001112723	72754.0	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	6.0	5.0	3.0	4.5	6.0	3.0
Merged-chr12-17450726-2	chr12	17450236	17451236	+	793.0	f0_balb.idr|f1_balb.idr	Intergenic	B3A|SINE|B2	-94137.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	4.5	1.0	4.0	0.0	9.5	2.0
Merged-chr8-71623854-1	chr8	71623354	71624354	+	793.0	f1_balb.idr	3' UTR (NM_146211, exon 12 of 12)	3' UTR (NM_146211, exon 12 of 12)	7252.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	11.0	8.0	10.0	6.5	5.5	12.0
Merged-chr15-73311176-2	chr15	73310676	73311676	+	793.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358046, intron 7 of 34)	intron (NM_001358046, intron 7 of 34)	-56294.0	NR_029561	387169.0		NR_029561	ENSMUSG00000065612	Mir151	Mirn151|mir-151|mmu-mir-151	microRNA 151	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-136790339-1	chr3	136789839	136790839	+	793.0	f0_balb.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	120273.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73367522-2	chr12	73367022	73368022	+	793.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_046013, intron 3 of 3)	intron (NR_046013, intron 3 of 3)	42041.0	NR_046013	380765.0	Mm.490476	NR_046013	ENSMUSG00000056359	D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr14-75231276-3	chr14	75230770	75231770	+	793.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001247984)	TTS (NM_001247984)	-11017.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19820152-2	chr7	19819652	19820652	+	793.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_033601, exon 2 of 9)	exon (NM_033601, exon 2 of 9)	2603.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23048374-5	chr11	23047894	23048894	+	793.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35007.0	NM_028672	73873.0	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85281384-2	chr12	85280884	85281884	+	793.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025421)	promoter-TSS (NM_025421)	-949.0	NM_025421	66204.0	Mm.311985	NM_025421	ENSMUSG00000008822	Acyp1	1110039O14Rik|AI325944	acylphosphatase 1, erythrocyte (common) type	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-66339155-2	chr6	66338655	66339655	+	793.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66650.0	NR_136927	102633773.0	Mm.272086	NR_136927	ENSMUSG00000107653	Gm31520	-	sterol-C5-desaturase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-117261426-1	chr9	117260926	117261926	+	793.0	f1_c57bl6.idr	intron (NM_001172121, intron 2 of 14)	intron (NM_001172121, intron 2 of 14)	-8943.0	NM_001172124	207181.0	Mm.326411	NM_178660	ENSMUSG00000039607	Rbms3	6720477E09Rik|8430436O14Rik	RNA binding motif, single stranded interacting protein	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr3-62338989-1	chr3	62338489	62339489	+	793.0	f0_balb.idr	5' UTR (NM_001081295, exon 1 of 14)	5' UTR (NM_001081295, exon 1 of 14)	212.0	NM_001081295	622434.0	Mm.153974	NM_001081295	ENSMUSG00000036885	Arhgef26	4631416L12Rik|8430436L14Rik|AI303572|AW491953|SGEF	Rho guanine nucleotide exchange factor (GEF) 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105441670-2	chr8	105441170	105442170	+	793.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033371, intron 2 of 10)	intron (NM_001033371, intron 2 of 10)	14030.0	NM_001170789	270091.0	Mm.212709	NM_001033371	ENSMUSG00000054320	Lrrc36	BC036564	leucine rich repeat containing 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-35512154-2	chr13	35511654	35512654	+	793.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_C_Mam|LINE|RTE-X	-147708.0	NM_009881	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	0.5	0.0	0.5	4.0	1.0	1.5
Merged-chr4-34645158-2	chr4	34644658	34645658	+	793.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151507, intron 8 of 19)	intron (NR_151507, intron 8 of 19)	30201.0	NM_181406	109093.0	Mm.22363	NM_181406	ENSMUSG00000028292	Rars2	1500002I10Rik|PRO1992|Rarsl	arginyl-tRNA synthetase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-42895922-1	chr16	42895422	42896422	+	793.0	f0_balb.idr	intron (NR_040402, intron 2 of 3)	Charlie7|DNA|hAT-Charlie	-11723.0	NM_001285805	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34607483-2	chr19	34606983	34607983	+	793.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005858)	promoter-TSS (NM_001005858)	-474.0	NM_001005858	667370.0	Mm.271850	NM_001005858	ENSMUSG00000062488	Ifit3b	I830012O16Rik	interferon-induced protein with tetratricopeptide repeats 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44403258-1	chr13	44402758	44403758	+	793.0	f1_balb.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-36469.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	17.5	54.0	41.5	23.0	42.5	14.0
Merged-chr10-128177562-2	chr10	128177062	128178062	+	793.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019711)	promoter-TSS (NM_019711)	-994.0	NM_019711	56516.0	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55085199-2	chr11	55084699	55085699	+	793.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID|SINE|ID	-7068.0	NM_177471	52570.0	Mm.22361	NM_177471	ENSMUSG00000049588	Ccdc69	2210021E03Rik|D11Ertd461e	coiled-coil domain containing 69	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77925220-1	chr15	77924720	77925720	+	793.0	f1_balb.idr	intron (NM_019913, intron 2 of 3)	intron (NM_019913, intron 2 of 3)	3774.0	NM_019913	56551.0	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr19-4615517-2	chr19	4615017	4616017	+	793.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_153388, exon 1 of 3)	5' UTR (NM_153388, exon 1 of 3)	150.0	NM_153388	225875.0	Mm.329675	NM_153388	ENSMUSG00000045045	Lrfn4	BC023156|Salm3	leucine rich repeat and fibronectin type III domain containing 4	protein-coding	1.5	0.0	0.0	1.5	0.0	0.0
Merged-chr1-167268838-3	chr1	167268394	167269394	+	793.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030724, intron 1 of 6)	intron (NM_030724, intron 1 of 6)	16233.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9999167-1	chr19	9998667	9999667	+	793.0	f1_c57bl6.idr	intron (NM_011913, intron 1 of 11)	intron (NM_011913, intron 1 of 11)	2466.0	NM_011913	24115.0	Mm.31577	NM_011913	ENSMUSG00000037418	Best1	Bmd|Vmd2|mBest1	bestrophin 1	protein-coding	0.5	2.0	3.0	0.0	0.0	0.0
Merged-chr4-136187009-2	chr4	136186484	136187484	+	793.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001305399, exon 4 of 5)	exon (NM_001305399, exon 4 of 5)	6202.0	NM_001305399	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	1.5	2.0	0.5	0.0	0.0	3.0
Merged-chr7-67422930-2	chr7	67422430	67423430	+	793.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-50072.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	4.0	2.0	1.5	0.0	1.5	1.5
Merged-chr11-3834716-2	chr11	3834216	3835216	+	793.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_152818, intron 1 of 13)	RMER1A|Other|Other	29187.0	NM_152818	74309.0	Mm.61022	NM_152818	ENSMUSG00000020435	Osbp2	1700095P05Rik|C630001G20Rik|Gm244|ORP-4|OSBPL1	oxysterol binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95829828-2	chr11	95829328	95830328	+	793.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163464)	TTS (NM_001163464)	5328.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83847575-2	chr7	83847103	83848103	+	793.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36738.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	2.0	0.0	1.5	3.0	6.5	3.5
Merged-chr10-7835659-1	chr10	7835159	7836159	+	793.0	f1_c57bl6.idr	promoter-TSS (NR_039563)	promoter-TSS (NR_039563)	-722.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	156.5	269.5	207.5	177.5	379.0	213.5
Merged-chr8-120793592-2	chr8	120793092	120794092	+	793.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54953.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21975446-1	chr10	21974946	21975946	+	793.0	f1_balb.idr	intron (NM_001161845, intron 3 of 13)	Lx8|LINE|L1	-3226.0	NM_001161847	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	5.5	0.0	12.0	0.0	1.0	3.5
Merged-chr10-80031193-2	chr10	80030693	80031693	+	793.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001142701, exon 23 of 23)	3' UTR (NM_001142701, exon 23 of 23)	8466.0	NM_025554	66420.0	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-72204388-1	chr2	72203888	72204888	+	793.0	f1_c57bl6.idr	intron (NM_001355478, intron 11 of 26)	intron (NM_001355478, intron 11 of 26)	-81249.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.0	0.0	1.0	0.0	0.0	3.0
Merged-chr5-36560357-3	chr5	36559839	36560839	+	793.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	22058.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0.0	2.5	6.0	0.0	1.5	4.0
Merged-chr7-31115093-2	chr7	31114623	31115623	+	793.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110252, intron 1 of 13)	intron (NM_001110252, intron 1 of 13)	203.0	NM_008281	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	4.0	8.0	15.0	16.0	24.5	10.5
Merged-chr6-117124972-2	chr6	117124472	117125472	+	793.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43563.0	NM_001012477	20315.0	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-174339145-2	chr2	174338645	174339645	+	793.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201616, intron 3 of 11)	intron (NM_201616, intron 3 of 11)	9056.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44822217-2	chr7	44821652	44822652	+	793.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171024, intron 1 of 8)	B2_Mm2|SINE|B2	-5494.0	NR_033136	107503.0	Mm.389890	NM_030693	ENSMUSG00000038539	Atf5	AFTA|Atf7|Atfx|ODA-10	activating transcription factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	3.0
Merged-chr15-78586793-2	chr15	78586293	78587293	+	793.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5204.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	0.0	1.0	0.0	1.0	2.5	5.0
Merged-chr12-85975002-2	chr12	85974502	85975502	+	793.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	L1MB3|LINE|L1	104039.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84779240-3	chr18	84778744	84779744	+	793.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35177.0	NR_155706	102641800.0		NR_155706		Gm38576	-	predicted gene, 38576	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-28001612-2	chr4	28001112	28002112	+	793.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-811519.0	NM_001290434	13841.0	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6264948-2	chr19	6264448	6265448	+	793.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029830)	TTS (NR_029830)	104.0	NR_029720	387187.0		NR_029720	ENSMUSG00000065523	Mir192	Mirn192|mir-192|mmu-mir-192	microRNA 192	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180225404-2	chr2	180224904	180225904	+	793.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081171, intron 1 of 78)	CpG	455.0	NM_001081171	16776.0	Mm.4339	NM_001081171	ENSMUSG00000015647	Lama5	AA408760|AA408762|AI853660|[a]5|laminin-511|mKIAA0533	laminin, alpha 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33828626-2	chr16	33828091	33829091	+	793.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1074.0	NM_010580	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73594622-4	chr12	73594138	73595138	+	792.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	9842.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75797844-4	chr10	75797371	75798371	+	792.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358778)	promoter-TSS (NM_001358778)	-140.0	NM_001358778	14871.0	Mm.2746	NM_008185	ENSMUSG00000001663	Gstt1	AI255817|Gstt1-1	glutathione S-transferase, theta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81404240-2	chr10	81403740	81404740	+	792.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_008688, intron 8 of 9)	ZP3AR|Satellite|Satellite	-5335.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-130888066-3	chr3	130887564	130888564	+	792.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-157666.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107057848-3	chr13	107057342	107058342	+	792.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35272.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	1.5	1.5	0.0	4.5	7.5	0.0
Merged-chr1-26687407-3	chr1	26686859	26687859	+	792.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033764, exon 1 of 2)	exon (NM_001033764, exon 1 of 2)	101.0	NM_001033764	210940.0	Mm.297614	NM_001033764	ENSMUSG00000073722	4931408C20Rik	-	RIKEN cDNA 4931408C20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80689131-2	chr18	80688631	80689631	+	792.883301	f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 2 of 9)	intron (NM_198429, intron 2 of 9)	19042.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44236840-2	chr9	44236340	44237340	+	792.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2794.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	1.0	0.0	3.0	1.5	0.0	0.0
Merged-chr3-96597895-6	chr3	96597465	96598465	+	792.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001024851, exon 2 of 2)	exon (NM_001024851, exon 2 of 2)	1329.0	NM_001024851	545554.0	Mm.267664	NM_001024851	ENSMUSG00000049097	Ankrd34a	AW060394|Ankrd34	ankyrin repeat domain 34A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85488079-3	chr8	85487611	85488611	+	792.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-4506.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8928804-4	chr12	8928290	8929290	+	792.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008640, intron 1 of 6)	L1MA6|LINE|L1	7483.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	2.5	0.0	0.5	0.5	5.0	0.5
Merged-chr15-25567418-2	chr15	25566918	25567918	+	792.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55132.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33772140-3	chr17	33771639	33772639	+	792.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	9436.0	NM_020581	57875.0	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	0.0	22.0	6.5	7.0	16.0	9.0
Merged-chr1-86467767-2	chr1	86467267	86468267	+	792.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41438.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70864111-4	chr8	70863636	70864636	+	792.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7128.0	NM_032397	84036.0	Mm.32074	NM_032397	ENSMUSG00000002908	Kcnn1	AI854248|KCa2.1|SK1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	protein-coding	3.0	1.0	5.0	11.0	1.5	8.0
Merged-chr9-72766882-2	chr9	72766382	72767382	+	792.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40392.0	NM_175485	235472.0	Mm.31696	NM_175485	ENSMUSG00000036030	Prtg	A230098A12Rik|Igdcc5	protogenin	protein-coding	0.0	1.5	0.0	2.0	0.0	2.5
Merged-chr5-41709688-2	chr5	41709188	41710188	+	792.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-1509.0	NM_001310590	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	0.0	3.0	2.0	0.0	2.0	1.0
Merged-chr11-4705140-2	chr11	4704640	4705640	+	792.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197979)	promoter-TSS (NM_197979)	484.0	NM_001356390	67178.0	Mm.271056	NM_026015	ENSMUSG00000009076	Zmat5	2610510L01Rik|D11Bwg0572e|D11Bwg1548e	zinc finger, matrin type 5	protein-coding	20.0	21.0	17.5	11.5	30.0	12.5
Merged-chr5-135470446-3	chr5	135469868	135470868	+	792.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	74754.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-10466675-3	chr10	10466191	10467191	+	792.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 1 of 36)	LTR101_Mam|LTR|ERVL	5623.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	50.5	172.0	99.5	9.0	23.0	12.0
Merged-chr10-127571285-3	chr10	127570776	127571776	+	792.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 34 of 88)	intron (NM_008512, intron 34 of 88)	-36717.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	12.5	13.0	4.5	12.5	11.0	4.5
Merged-chr15-81210727-3	chr15	81210239	81211239	+	792.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19886.0	NR_015603	67638.0	Mm.390832	NM_026288	ENSMUSG00000047938	4930483J18Rik	-	RIKEN cDNA 4930483J18 gene	ncRNA	7.0	0.5	4.0	7.0	10.0	2.5
Merged-chr6-83641910-2	chr6	83641410	83642410	+	792.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	14206.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	11.5	3.0	1.0	0.0	10.5	4.0
Merged-chr9-72528230-1	chr9	72527730	72528730	+	792.666687	f0_balb.idr	intron (NR_045735, intron 1 of 2)	MTC|LTR|ERVL-MaLR	3628.0	NR_045735	75115.0	Mm.280755	NR_045735	ENSMUSG00000096986	4930509E16Rik	-	RIKEN cDNA 4930509E16 gene	ncRNA	1.5	15.0	4.5	19.0	41.5	22.5
Merged-chr3-89511090-3	chr3	89510561	89511561	+	792.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9103.0	NM_080466	140493.0	Mm.120250	NM_080466	ENSMUSG00000000794	Kcnn3	KCa2.3|SK3|SKCA3	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146810817-4	chr5	146810330	146811330	+	792.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15874.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	26.0	47.0	51.0	6.5	25.5	17.0
Merged-chr1-9944918-2	chr1	9944371	9945371	+	792.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024067)	promoter-TSS (NR_024067)	-753.0	NR_024067	73824.0	Mm.28311	NR_024067	ENSMUSG00000098234	Snhg6	1110008H02Rik	small nucleolar RNA host gene 6	ncRNA	39.5	74.0	50.0	41.5	75.5	67.0
Merged-chr2-164840372-2	chr2	164839872	164840872	+	792.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_011125, exon 14 of 16)	exon (NM_011125, exon 14 of 16)	6599.0	NM_008906	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-3825877-4	chr13	3825372	3826372	+	792.645813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11885.0	NM_020036	80796.0	Mm.21075	NM_020036	ENSMUSG00000033765	Calm4	2310037J09Rik|AI649108|DD112|Scarf	calmodulin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16288049-2	chr7	16287549	16288549	+	792.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-1254.0	NM_001136471	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-137821092-4	chr3	137820596	137821596	+	792.625	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37481.0	NR_105801	102466638.0		NR_105801	ENSMUSG00000099011	Mir6380	Gm27356|mmu-mir-6380	microRNA 6380	ncRNA	12.5	19.0	4.5	11.0	20.5	10.0
Merged-chr19-61264209-2	chr19	61263709	61264709	+	792.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR33|LTR|ERVK	-35791.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25811546-6	chr7	25811009	25812009	+	792.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028775, intron 3 of 8)	intron (NM_028775, intron 3 of 8)	5021.0	NM_028775	74134.0	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154653995-2	chr2	154653495	154654495	+	792.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3031.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0.0	0.0	3.0	0.0	0.0	0.0
Merged-chr6-47646860-2	chr6	47646360	47647360	+	792.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12B|LTR|ERVK	8234.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53724341-4	chr15	53723850	53724850	+	792.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177225, intron 2 of 4)	intron (NM_177225, intron 2 of 4)	-110071.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58306624-4	chr13	58306129	58307129	+	792.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175214, intron 12 of 16)	L1MB8|LINE|L1	6520.0	NR_105788	102465191.0		NR_105788	ENSMUSG00000098258	Mir6369	Gm27615|mmu-mir-6369	microRNA 6369	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26502490-3	chr2	26502010	26503010	+	792.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 1 of 33)	CpG	1312.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60559499-2	chr18	60558999	60559999	+	792.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357462)	TTS (NM_001357462)	-1287.0	NM_025776	66810.0	Mm.275106	NM_025776	ENSMUSG00000024604	Rbm22	8430430L24Rik	RNA binding motif protein 22	protein-coding	3.0	0.0	2.0	0.0	1.0	1.0
Merged-chr2-173024142-2	chr2	173023642	173024642	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019547, intron 3 of 3)	intron (NM_019547, intron 3 of 3)	2240.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	0.0	0.0	0.0	0.0	0.0	2.5
Merged-chr2-71028065-2	chr2	71027565	71028565	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 1 of 9)	B4A|SINE|B4	-9691.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43036330-2	chr4	43035830	43036830	+	792.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001253353, exon 3 of 9)	exon (NM_001253353, exon 3 of 9)	3971.0	NM_001253353	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	1.5	1.0	0.0	0.0	6.0	0.5
Merged-chr1-138080494-2	chr1	138079994	138080994	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 20 of 28)	(CA)n|Simple_repeat|Simple_repeat	94632.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130858356-2	chr5	130857856	130858856	+	792.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	409564.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44372587-2	chr7	44372087	44373087	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027049, intron 2 of 5)	L2b|LINE|L2	2443.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7227408-2	chr19	7226908	7227908	+	792.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027643, exon 8 of 8)	3' UTR (NM_027643, exon 8 of 8)	-9792.0	NM_007750	12868.0	Mm.14022	NM_007750	ENSMUSG00000035885	Cox8a	COX8L	cytochrome c oxidase subunit VIIIa	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3885368-2	chr12	3884868	3885868	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 6 of 22)	intron (NM_007872, intron 6 of 22)	-6376.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100468324-2	chr15	100467824	100468824	+	792.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357982)	promoter-TSS (NM_001357982)	-687.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36630401-2	chr16	36629901	36630901	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	35676.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	15.0	1.5	4.0	3.0	5.0
Merged-chr9-110636130-2	chr9	110635630	110636630	+	792.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106186)	promoter-TSS (NR_106186)	-15.0	NR_106186	102466885.0		NR_106186	ENSMUSG00000099275	Mir8107	Gm27455|mmu-mir-8107	microRNA 8107	ncRNA	2.0	2.5	1.5	2.0	0.0	0.0
Merged-chr3-79886033-3	chr3	79885568	79886568	+	792.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_133187, exon 1 of 4)	5' UTR (NM_133187, exon 1 of 4)	138.0	NM_133187	68659.0	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	5.5	16.0	1.5	1.0	2.0	0.5
Merged-chr7-127637739-2	chr7	127637239	127638239	+	792.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22467.0	NR_155451	320683.0	Mm.156718	NM_177226	ENSMUSG00000045639	Zfp629	9330199A09Rik|Znf629	zinc finger protein 629	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21825114-2	chr10	21824614	21825614	+	792.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57070.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36486256-2	chr5	36485756	36486756	+	792.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_025725, exon 1 of 1)	exon (NM_025725, exon 1 of 1)	1668.0	NM_025725	66717.0	Mm.42368	NM_025725	ENSMUSG00000050677	Ccdc96	4921513E08Rik	coiled-coil domain containing 96	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135935476-2	chr5	135934985	135935985	+	792.5	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_018871)	promoter-TSS (NM_018871)	-844.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	3.0	0.0	3.5	0.5	2.5	4.5
Merged-chr15-95789175-2	chr15	95788675	95789675	+	792.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1668.0	NM_175344	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5404732-1	chr19	5404232	5405232	+	792.5	f1_c57bl6.idr	Intergenic	Intergenic	-2083.0	NR_015545	74931.0	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	4.5	1.0	4.0	0.0	2.0	0.0
Merged-chr11-86670788-2	chr11	86670288	86671288	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029478, intron 1 of 11)	intron (NM_029478, intron 1 of 11)	487.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94702987-4	chr8	94702481	94703481	+	792.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6739.0	NM_026385	67801.0	Mm.279977	NM_026385	ENSMUSG00000031775	Pllp	0610010I06Rik|AV001002|Plapi|Tm4sf11	plasma membrane proteolipid	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134680519-2	chr1	134680019	134681019	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009307, intron 2 of 9)	intron (NM_009307, intron 2 of 9)	-28781.0	NM_001355726	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88493437-2	chr10	88492937	88493937	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144807, intron 1 of 7)	intron (NM_144807, intron 1 of 7)	10533.0	NR_027477	212862.0	Mm.288897	NM_144807	ENSMUSG00000060002	Chpt1	-	choline phosphotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167425584-2	chr2	167425084	167426084	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304540, intron 2 of 16)	intron (NM_001304540, intron 2 of 16)	3874.0	NM_001304542	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137331923-2	chr4	137331423	137332423	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009861, intron 3 of 5)	intron (NM_009861, intron 3 of 5)	25836.0	NM_009861	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	4.5	13.0	10.5	3.5	1.5	6.5
Merged-chr10-68140988-4	chr10	68140483	68141483	+	792.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 4 of 9)	intron (NM_023598, intron 4 of 9)	137743.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	31.0	76.0	44.0	40.5	40.5	33.0
Merged-chr18-23875484-2	chr18	23874984	23875984	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	71514.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-6716400-2	chr10	6715900	6716900	+	792.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42193.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94372821-2	chr11	94372229	94373229	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 7 of 30)	intron (NM_029600, intron 7 of 30)	20247.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	1.5	15.5	6.0	8.0	14.5	16.5
Merged-chr9-63919170-2	chr9	63918670	63919670	+	792.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102889.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85712767-2	chr11	85712267	85713267	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045875, intron 1 of 5)	intron (NR_045875, intron 1 of 5)	6977.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-15769082-2	chr3	15768581	15769581	+	792.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79406.0	NM_001173459	100038947.0	Mm.330924	NM_001173459	ENSMUSG00000074677	LOC100038947	-	signal-regulatory protein beta 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-114831124-2	chr13	114830624	114831624	+	792.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12887.0	NM_001113374	17434.0	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-51209179-2	chr6	51208679	51209679	+	792.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60731.0	NR_029719	387166.0		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	0.0	11.5	0.0	0.0	0.0	0.0
Merged-chr14-57345415-2	chr14	57344915	57345915	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030004, intron 3 of 7)	(TG)n|Simple_repeat|Simple_repeat	53068.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-47015441-2	chr7	47014941	47015941	+	792.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7027.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132735900-2	chr7	132735400	132736400	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347630, intron 3 of 3)	intron (NM_001347630, intron 3 of 3)	41016.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118041256-1	chr10	118040756	118041756	+	792.5	f0_balb.idr	Intergenic	RMER15-int|LTR|ERVL	-100531.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	3.0	1.5	3.5	11.0	24.0	32.5
Merged-chr11-101231650-2	chr11	101231150	101232150	+	792.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5187.0	NM_007970	14055.0	Mm.5027	NM_007970	ENSMUSG00000006920	Ezh1	ENX-2	enhancer of zeste 1 polycomb repressive complex 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34908467-2	chr5	34907967	34908967	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010414, intron 66 of 66)	intron (NM_010414, intron 66 of 66)	-7448.0	NM_207277	403174.0	Mm.291225	NM_207277	ENSMUSG00000051246	Msantd1	A930005I04Rik|Gm144	Myb/SANT-like DNA-binding domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45888404-2	chr7	45887904	45888904	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021482, intron 3 of 4)	intron (NM_021482, intron 3 of 4)	8307.0	NM_001291064	58867.0	Mm.214217	NM_021482	ENSMUSG00000040231	Syngr4	1700016O14Rik	synaptogyrin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-46192841-4	chr9	46192337	46193337	+	792.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 6 of 24)	intron (NM_027498, intron 6 of 24)	-35793.0	NM_009692	11806.0	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166482031-2	chr2	166481531	166482531	+	792.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34580.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80175549-4	chr11	80175062	80176062	+	792.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 8 of 10)	intron (NM_172133, intron 8 of 10)	-8310.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	34.5	155.5	68.5	39.0	90.0	59.5
Merged-chr4-132747213-2	chr4	132746713	132747713	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133888, intron 1 of 7)	intron (NM_133888, intron 1 of 7)	9958.0	NM_133888	100340.0	Mm.287187	NM_133888	ENSMUSG00000028885	Smpdl3b	1110054A24Rik|AU045240|Asml3b	sphingomyelin phosphodiesterase, acid-like 3B	protein-coding	30.5	106.0	44.5	32.0	121.5	49.5
Merged-chr12-100007566-2	chr12	100007066	100008066	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	43067.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124746320-1	chr8	124745820	124746820	+	792.5	f1_balb.idr	intron (NM_001081120, intron 1 of 1)	intron (NM_001081120, intron 1 of 1)	5489.0	NM_001081120	69627.0	Mm.271600	NM_001081120	ENSMUSG00000043068	Fam89a	2310031A18Rik	family with sequence similarity 89, member A	protein-coding	0.0	0.0	3.0	6.5	2.0	5.0
Merged-chr6-83327880-2	chr6	83327380	83328380	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145571, intron 1 of 5)	B1_Mur2|SINE|Alu	1841.0	NM_145571	232157.0	Mm.29500	NM_145571	ENSMUSG00000043131	Mob1a	4022402H07Rik|MOB1|MOB4B|Mobk1b|Mobkl1b	MOB kinase activator 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-9570714-2	chr5	9570214	9571214	+	792.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_181850, exon 3 of 6)	exon (NM_181850, exon 3 of 6)	154638.0	NM_181850	108069.0	Mm.318966	NM_181850	ENSMUSG00000003974	Grm3	0710001G23Rik|Gprc1c|mGlu3|mGluR3	glutamate receptor, metabotropic 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24644094-4	chr17	24643563	24644563	+	792.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023055, intron 2 of 6)	intron (NM_023055, intron 2 of 6)	894.0	NM_023449	65962.0	Mm.21587	NM_023055	ENSMUSG00000002504	Slc9a3r2	0610011L07Rik|1200011K07Rik|2010007A20Rik|E3karp|NHERF-2|Nherf2|Octs2|Sip-1|Sip1|Sryip1|Tka-1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	protein-coding	0.0	5.5	1.5	3.5	0.0	3.5
Merged-chr15-3273049-2	chr15	3272549	3273549	+	792.458374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009155, intron 1 of 4)	intron (NM_009155, intron 1 of 4)	2072.0	NM_009155	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-46028167-4	chr9	46027670	46028670	+	792.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	15350.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45378922-3	chr13	45378435	45379435	+	792.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10807.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	0.0	8.0	0.0	1.5	11.0	3.0
Merged-chr4-44113846-3	chr4	44113337	44114337	+	792.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8056.0	NR_040414	623796.0	Mm.490409	NR_040414	ENSMUSG00000084274	Gm12504	-	prothymosin alpha pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135691647-3	chr1	135691139	135692139	+	792.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28424.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16111014-3	chr1	16110553	16111553	+	792.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133832, intron 2 of 5)	intron (NM_133832, intron 2 of 5)	5171.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96052124-3	chr3	96051665	96052665	+	792.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013841, intron 3 of 14)	intron (NM_013841, intron 3 of 14)	6290.0	NM_013841	22365.0	Mm.263185	NM_013841	ENSMUSG00000015747	Vps45	AI462172|AW554165|mVps45	vacuolar protein sorting 45	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-25007394-2	chr13	25006894	25007894	+	792.416687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013389, intron 2 of 10)	intron (NM_001013389, intron 2 of 10)	12923.0	NM_001013389	380836.0	Mm.387097	NM_001013389	ENSMUSG00000021339	Mrs2	Gm902|HPT|Mrs2l|RPT	MRS2 magnesium transporter	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90239289-3	chr9	90238883	90239883	+	792.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	L1MB8|LINE|L1	31386.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	11.0	9.5	14.0	8.5	18.5	7.0
Merged-chr7-130816384-3	chr7	130815899	130816899	+	792.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081038, intron 11 of 15)	intron (NM_001081038, intron 11 of 15)	42330.0	NM_001081038	330660.0	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84337461-4	chr12	84336974	84337974	+	792.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144833, intron 8 of 11)	intron (NM_144833, intron 8 of 11)	20615.0	NM_001252583	52708.0	Mm.255150	NM_144833	ENSMUSG00000042472	Zfp410	Apa1|D12Ertd748e|Znf410	zinc finger protein 410	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27749981-4	chr2	27749496	27750496	+	792.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 5 of 9)	intron (NM_001290481, intron 5 of 9)	39413.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134616433-4	chr4	134615931	134616931	+	792.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 2 of 11)	intron (NM_207237, intron 2 of 11)	-48580.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-85155192-5	chr6	85154682	85155682	+	792.366638	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-17418.0	NM_011467	20751.0	Mm.28393	NM_011467	ENSMUSG00000033735	Spr	AA409688|Gm10328	sepiapterin reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53079376-9	chr4	53078981	53079981	+	792.351868	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 18 of 49)	intron (NM_013454, intron 18 of 49)	67601.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97631551-2	chr11	97631049	97632049	+	792.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1833.0	NM_175332	103551.0	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	0.0	13.0	5.0	0.0	9.0	5.5
Merged-chr17-64660964-2	chr17	64660464	64661464	+	792.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 6 of 21)	L1_Rod|LINE|L1	59315.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83106192-2	chr8	83105698	83106698	+	792.333374	f0_balb.idr|f1_balb.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-59154.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	23.5	39.0	14.5	24.0	66.0	35.5
Merged-chr4-88035590-3	chr4	88035108	88036108	+	792.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2201.0	NM_027326	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-89453259-1	chr10	89452759	89453759	+	792.333313	f0_balb.idr	TTS (NM_001163504)	TTS (NM_001163504)	-9292.0	NM_001033331	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	1.0	2.5	5.0	0.5	2.5	3.5
Merged-chr5-102043929-3	chr5	102043425	102044425	+	792.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	25996.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191202441-2	chr1	191201941	191202941	+	792.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-19108.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-35563707-3	chr5	35563233	35564233	+	792.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030208, intron 9 of 10)	intron (NM_030208, intron 9 of 10)	11337.0	NM_030208	78890.0	Mm.98522	NM_030208	ENSMUSG00000029097	Trmt44	2310079F23Rik|Mettl19	tRNA methyltransferase 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-35758493-3	chr5	35757985	35758985	+	792.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177678, intron 1 of 19)	CpG	605.0	NM_001177698	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-13242721-3	chr12	13242216	13243216	+	792.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134040, intron 5 of 25)	intron (NM_134040, intron 5 of 25)	6458.0	NM_134040	104721.0	Mm.251255	NM_134040	ENSMUSG00000037149	Ddx1	AA409185|DBP-RB	DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-92998816-4	chr8	92998311	92999311	+	792.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009209, exon 14 of 14)	3' UTR (NM_009209, exon 14 of 14)	37764.0	NM_009209	20538.0	Mm.57040	NM_009209	ENSMUSG00000055368	Slc6a2	NE-T|NET|Slc6a5	solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2	protein-coding	0.0	6.0	1.5	0.0	0.0	4.0
Merged-chr8-46559615-2	chr8	46559115	46560115	+	792.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_027973, intron 3 of 12)	B3|SINE|B2	7546.0	NM_027973	71876.0	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173083872-3	chr2	173083364	173084364	+	792.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	35661.0	NM_001081387	664799.0	Mm.389396	NM_001081387	ENSMUSG00000070495	Ctcfl	Boris	CCCTC-binding factor (zinc finger protein)-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-26345913-6	chr4	26345409	26346409	+	792.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172865, intron 1 of 4)	intron (NM_172865, intron 1 of 4)	743.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106474559-5	chr9	106473988	106474988	+	792.313354	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001311150, exon 5 of 11)	exon (NM_001311150, exon 5 of 11)	2461.0	NM_001311150	235587.0	Mm.273659	NM_145619	ENSMUSG00000023249	Parp3	A930002C11Rik|AW990611|Adprt3|Adprtl3|PARP-3|pADPRT-3	poly (ADP-ribose) polymerase family, member 3	protein-coding	3.0	1.0	4.0	0.0	2.5	6.0
Merged-chr7-16223086-3	chr7	16222520	16223520	+	792.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027883)	promoter-TSS (NM_027883)	-988.0	NM_027883	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	5.5	5.0	7.0	34.5	14.5	7.5
Merged-chr1-187032019-2	chr1	187031519	187032519	+	792.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	64603.0	NM_033077	110957.0	Mm.108054	NM_033077	ENSMUSG00000039224	D1Pas1	Pl10	DNA segment, Chr 1, Pasteur Institute 1	protein-coding	3.5	13.5	0.0	0.0	2.5	1.5
Merged-chr9-16319182-4	chr9	16318680	16319680	+	792.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 1 of 24)	intron (NM_001080814, intron 1 of 24)	59051.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124733803-2	chr6	124733303	124734303	+	792.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013545)	promoter-TSS (NM_013545)	-649.0	NM_013545	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98153843-4	chr15	98153343	98154343	+	792.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170711, intron 1 of 3)	intron (NM_001170711, intron 1 of 3)	-8141.0	NM_001170710	78541.0	Mm.200766	NM_030121	ENSMUSG00000048175	Asb8	4930539L19Rik|AI788835|C430011H06Rik	ankyrin repeat and SOCS box-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51968124-3	chr11	51967660	51968660	+	792.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029976, intron 1 of 2)	intron (NM_029976, intron 1 of 2)	529.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3855993-2	chr19	3855493	3856493	+	792.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271496, intron 1 of 11)	intron (NM_001271496, intron 1 of 11)	4220.0	NR_073190	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70756830-2	chr8	70756330	70757330	+	792.229126	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166399, intron 3 of 4)	intron (NM_001166399, intron 3 of 4)	2151.0	NM_001166399	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	2.5	7.0	3.5	1.0	3.0	2.5
Merged-chr16-92457848-4	chr16	92457353	92458353	+	792.229126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	MLT1A|LTR|ERVL-MaLR	8316.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86599518-3	chr11	86599010	86600010	+	792.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 10 of 11)	(A)n|Simple_repeat|Simple_repeat	-15352.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-77903725-4	chr14	77903174	77904174	+	792.216675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178825)	promoter-TSS (NM_178825)	-565.0	NM_178825	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	17.5	63.5	56.0	14.5	20.5	35.5
Merged-chr11-107511039-4	chr11	107510547	107511547	+	792.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31519.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136670701-4	chr1	136670307	136671307	+	792.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12589.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108536614-2	chr3	108536114	108537114	+	792.200012	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029314)	promoter-TSS (NM_029314)	-73.0	NM_001033304	229722.0	Mm.316890	NM_001033304	ENSMUSG00000040412	5330417C22Rik	BB183350	RIKEN cDNA 5330417C22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-49484929-3	chr9	49484480	49485480	+	792.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172770, intron 1 of 21)	intron (NM_172770, intron 1 of 21)	1245.0	NM_172770	235330.0	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding	0.0	0.0	0.5	14.0	35.0	18.0
Merged-chr10-30844239-4	chr10	30843731	30844731	+	792.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1448.0	NM_013904	15214.0	Mm.103573	NM_013904	ENSMUSG00000019789	Hey2	CHF1|Herp1|Hrt2|bHLHb32|hesr2	hairy/enhancer-of-split related with YRPW motif 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20803389-3	chr16	20802897	20803897	+	792.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68886.0	NM_009379	21832.0	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-135193135-1	chr6	135192635	135193635	+	792.166687	f0_balb.idr	non-coding (NR_040296, exon 5 of 5)	non-coding (NR_040296, exon 5 of 5)	4655.0	NR_040296	100502888.0	Mm.437844	NR_040296	ENSMUSG00000108239	Gm19434	-	predicted gene, 19434	ncRNA	3.0	15.0	3.0	9.5	9.0	3.0
Merged-chr9-20889810-2	chr9	20889310	20890310	+	792.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_145610, exon 5 of 11)	exon (NM_145610, exon 5 of 11)	1635.0	NM_145610	235036.0	Mm.2930	NM_145610	ENSMUSG00000004100	Ppan	A230087P06Rik|SSF1	peter pan homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17617568-2	chr17	17617064	17618064	+	792.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	6925.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	10.0	72.0	43.5	7.5	50.5	32.0
Merged-chr12-70234580-2	chr12	70234064	70235064	+	792.166687	f0_c57.idr|f1_c57bl6.idr	TTS (NR_045174)	TTS (NR_045174)	6723.0	NR_045174	414124.0	Mm.416164	NR_045174	ENSMUSG00000085298	F730035M05Rik	-	RIKEN cDNA F730035M05 gene	ncRNA	21.0	32.0	19.5	5.0	3.5	1.5
Merged-chr4-88115705-3	chr4	88115240	88116240	+	792.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081184, intron 1 of 43)	Tigger7|DNA|TcMar-Tigger	-6300.0	NR_030478	735282.0		NR_030478	ENSMUSG00000070077	Mir491	Mirn491|mir-491|mmu-mir-491	microRNA 491	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67190445-3	chr10	67189955	67190955	+	792.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 3 of 25)	B3|SINE|B2	4705.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123035677-2	chr5	123035177	123036177	+	792.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NR_153115)	TTS (NR_153115)	11339.0	NM_029112	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	0.0	2.0	1.0	0.0	0.0	0.0
Merged-chr9-58554863-5	chr9	58554374	58555374	+	792.164307	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-13934.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	7.0	2.0	1.0	1.0	1.5	0.5
Merged-chr3-86987079-3	chr3	86986560	86987560	+	792.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007640, exon 2 of 7)	exon (NM_007640, exon 2 of 7)	474.0	NR_038188	12480.0	Mm.389465	NM_007640	ENSMUSG00000041750	Cd1d2	CD1.2|Cd1b|Ly-38	CD1d2 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122312276-3	chr3	122311755	122312755	+	792.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18552.0	NR_030439	791077.0		NR_030439	ENSMUSG00000076456	Mir760	Mirn760|mir-760|mmu-mir-760	microRNA 760	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95670721-3	chr3	95670219	95671219	+	792.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11998.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61658006-2	chr10	61657506	61658506	+	792.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_026438, intron 2 of 10)	ID_B1|SINE|B4	9385.0	NM_026438	67895.0	Mm.28897	NM_026438	ENSMUSG00000020089	Ppa1	2010317E03Rik|Pyp	pyrophosphatase (inorganic) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61382229-5	chr10	61381821	61382821	+	792.084473	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013753, intron 1 of 19)	intron (NM_013753, intron 1 of 19)	1202.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-57778521-2	chr11	57778045	57779045	+	792.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_134189, intron 8 of 11)	intron (NM_134189, intron 8 of 11)	22922.0	NR_131042	76516.0	Mm.28485	NR_131042	ENSMUSG00000087165	2010001A14Rik	-	RIKEN cDNA 2010001A14 gene	ncRNA	0.0	8.5	0.5	0.0	0.0	0.0
Merged-chr8-105303579-4	chr8	105303084	105304084	+	792.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148952, intron 7 of 9)	intron (NM_148952, intron 7 of 9)	-2017.0	NM_172760	234683.0	Mm.237966	NM_172760	ENSMUSG00000014791	Elmo3	9930107J06|BC058752|CED-12|Ced12	engulfment and cell motility 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43465180-4	chr1	43464696	43465696	+	792.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	19445.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-70398294-4	chr4	70397796	70398796	+	792.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145990, intron 3 of 36)	RLTR16B_MM|LTR|ERVK	12139.0	NM_001313762	214444.0	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37233000-5	chr10	37232458	37233458	+	792.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94032.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-88070643-3	chr11	88070142	88071142	+	792.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016686, intron 1 of 5)	intron (NM_016686, intron 1 of 5)	2363.0	NM_016686	22344.0	Mm.46628	NM_016686	ENSMUSG00000018377	Vezf1	AI848691|AW046909|db1	vascular endothelial zinc finger 1	protein-coding	4.0	5.0	7.0	4.5	8.5	16.0
Merged-chr4-53028543-3	chr4	53028043	53029043	+	792.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16663.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32333357-3	chr16	32332852	32333852	+	792.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177633, intron 1 of 10)	UCON11|Unknown|Unknown	1100.0	NM_177633	224111.0	Mm.31275	NM_177633	ENSMUSG00000053774	Ubxn7	A630090P18|AI196514|Ubxd7|mKIAA0794	UBX domain protein 7	protein-coding	4.0	19.5	5.5	6.5	26.5	6.5
Merged-chr2-103971111-3	chr2	103970576	103971576	+	792.0476070000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142336, intron 2 of 3)	intron (NM_001142336, intron 2 of 3)	789.0	NM_001142335	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	1.0	2.0	2.5	1.0	5.5	2.5
Merged-chr8-120821573-4	chr8	120821045	120822045	+	792.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82906.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117164763-3	chr5	117164302	117165302	+	792.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	31214.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	0.0	1.5	4.0	19.5	17.0	11.5
Merged-chr15-40949428-4	chr15	40948892	40949892	+	792.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356998, intron 3 of 6)	(TTC)n|Simple_repeat|Simple_repeat	-224309.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-26389768-3	chr11	26389287	26390287	+	792.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277273, intron 1 of 13)	intron (NM_001277273, intron 1 of 13)	2703.0	NR_102382	67030.0	Mm.18875	NM_025923	ENSMUSG00000004018	Fancl	2010322C19Rik|AW554273|B230118H11Rik|Phf9|Pog|gcd	Fanconi anemia, complementation group L	protein-coding	0.0	1.0	1.0	0.0	2.0	0.5
Merged-chr17-35737548-1	chr17	35737048	35738048	+	792.0	f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-32949.0	NM_007584	12305.0	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	3.0	7.5	6.5	2.0	8.0	1.0
Merged-chr6-73249900-1	chr6	73249400	73250400	+	792.0	f1_balb.idr	intron (NM_019879, intron 1 of 8)	intron (NM_019879, intron 1 of 8)	1395.0	NM_019879	56451.0	Mm.29845	NM_019879	ENSMUSG00000052738	Suclg1	1500000I01Rik|Sucla1	succinate-CoA ligase, GDP-forming, alpha subunit	protein-coding	10.0	11.5	3.5	10.0	11.5	1.0
Merged-chr15-84253631-2	chr15	84253131	84254131	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	intron (NM_133167, intron 1 of 12)	21588.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	14.0	34.0	36.5	11.5	8.0	4.5
Merged-chr11-110433206-2	chr11	110432706	110433706	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	34104.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-5243272-2	chr15	5242772	5243772	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008965, intron 1 of 2)	intron (NM_008965, intron 1 of 2)	915.0	NM_001136079	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34365250-2	chr17	34364751	34365751	+	792.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_079835, exon 7 of 9)	exon (NM_079835, exon 7 of 9)	10429.0	NM_079835	547431.0	Mm.441007	NM_079835	ENSMUSG00000024340	Btnl2	BTL-II|BTLN2|Btl2|Gm315|NG9	butyrophilin-like 2	protein-coding	71.5	143.0	80.0	68.5	109.5	68.0
Merged-chr12-85388720-3	chr12	85388183	85389183	+	792.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13966.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55727177-2	chr14	55726677	55727677	+	792.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4914.0	NM_001360387	56187.0	Mm.87216	NM_019519	ENSMUSG00000040472	Rabggta	gm	Rab geranylgeranyl transferase, a subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123719525-2	chr5	123719025	123720025	+	792.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027494, exon 2 of 14)	exon (NM_027494, exon 2 of 14)	1519.0	NM_027494	70650.0	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	0.0	14.0	5.0	0.0	2.0	2.5
Merged-chr2-31229032-2	chr2	31228532	31229532	+	792.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-16891.0	NM_019681	14299.0	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118368565-2	chr11	118368065	118369065	+	792.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-13154.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81008867-2	chr10	81008367	81009367	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010319, intron 1 of 3)	B4A|SINE|B4	6058.0	NM_010319	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46298282-2	chr17	46297782	46298782	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286013, intron 1 of 5)	CpG	354.0	NM_001286013	106565.0	Mm.23633	NM_134120	ENSMUSG00000047428	Dlk2	AI413481|DLK-2|Egfl9	delta like non-canonical Notch ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70655274-1	chr8	70654774	70655774	+	792.0	f1_c57bl6.idr	intron (NM_023217, intron 2 of 4)	intron (NM_023217, intron 2 of 4)	4464.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	0.0	6.0	9.0	1.5	3.0	3.0
Merged-chr8-19958086-3	chr8	19957587	19958587	+	792.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270553, intron 6 of 9)	RMER16_Mm|LTR|ERVK	228511.0	NM_001039553	626415.0	Mm.425517	NM_001039553	ENSMUSG00000096265	4930467E23Rik	TSAP	RIKEN cDNA 4930467E23 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77827803-2	chr9	77827303	77828303	+	792.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73268.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63120766-2	chr4	63120266	63121266	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028326, intron 12 of 14)	intron (NM_028326, intron 12 of 14)	33406.0	NM_007443	11699.0	Mm.2197	NM_007443	ENSMUSG00000028356	Ambp	AI194774|ASPI|HI-30|Intin4|Itil|UTI	alpha 1 microglobulin/bikunin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9743412-1	chr18	9742912	9743912	+	792.0	f0_balb.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	35764.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	6.5	5.0	4.5	4.0	5.0	5.0
Merged-chr4-133687203-2	chr4	133686703	133687703	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080819, intron 14 of 19)	intron (NM_001080819, intron 14 of 19)	-14037.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	0.0	1.0	0.0	2.5	0.0	2.5
Merged-chr7-126771822-2	chr7	126771322	126772322	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024228, intron 9 of 9)	B1_Mur4|SINE|Alu	-5153.0	NM_026875	66090.0	Mm.27114	NM_025347	ENSMUSG00000042675	Ypel3	0610043B10Rik|1190001G19Rik|Suap	yippee like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98947397-1	chr13	98946897	98947897	+	792.0	f0_balb.idr	Intergenic	Intergenic	-21013.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	9.5	72.0	34.5	19.0	93.5	50.5
Merged-chr15-39006107-2	chr15	39005607	39006607	+	792.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162494)	promoter-TSS (NM_001162494)	-173.0	NM_001162494	14368.0	Mm.4769	NM_008056	ENSMUSG00000022297	Fzd6	Fz6	frizzled class receptor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-16992511-2	chr12	16992007	16993007	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172574, intron 5 of 6)	intron (NM_172574, intron 5 of 6)	7611.0	NM_172574	217430.0	Mm.379451	NM_172574	ENSMUSG00000045679	Pqlc3	C78076|E030024M05Rik	PQ loop repeat containing	protein-coding	0.0	0.5	1.0	0.0	0.0	1.5
Merged-chr6-120472741-3	chr6	120472332	120473332	+	792.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 2 of 12)	intron (NM_008359, intron 2 of 12)	9635.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46348957-2	chr4	46348391	46349391	+	792.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4697.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	0.0	0.0	0.5	0.0	2.0	1.5
Merged-chr14-76150855-2	chr14	76150355	76151355	+	792.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39964.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119050622-2	chr11	119050122	119051122	+	792.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9709.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91759026-2	chr12	91758526	91759526	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	RMER6A|LTR|ERVK	27410.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46550179-3	chr4	46549684	46550684	+	792.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 3 of 11)	intron (NM_001164804, intron 3 of 11)	-14043.0	NM_029077	74735.0	Mm.240252	NM_029077	ENSMUSG00000039853	Trim14	5830400N10Rik|pub	tripartite motif-containing 14	protein-coding	0.0	1.0	0.0	0.0	1.0	1.0
Merged-chr2-25263562-2	chr2	25263062	25264062	+	792.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175286, exon 1 of 4)	exon (NM_175286, exon 1 of 4)	964.0	NM_175286	97031.0	Mm.308539	NM_175286	ENSMUSG00000048707	Tprn	C430004E15Rik|C87750	taperin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-34398874-1	chr15	34398374	34399374	+	792.0	f0_balb.idr	intron (NM_001358780, intron 6 of 18)	intron (NM_001358780, intron 6 of 18)	-41002.0	NM_001256161	77358.0	Mm.402759	NM_001256161	ENSMUSG00000094447	9430069I07Rik	-	RIKEN cDNA 9430069I07 gene	protein-coding	3.5	0.0	1.0	11.0	8.5	0.0
Merged-chr2-31068249-2	chr2	31067749	31068749	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	28251.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92444980-2	chr5	92444480	92445480	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 11 of 11)	intron (NM_007644, intron 11 of 11)	-9781.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128611859-2	chr4	128611340	128612340	+	792.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-1742.0	NM_177758	269585.0	Mm.153291	NM_177758	ENSMUSG00000061894	Zscan20	C130001F22|Zfp31|Zkscan20	zinc finger and SCAN domains 20	protein-coding	15.0	10.5	20.0	10.0	32.5	18.0
Merged-chr14-21850262-2	chr14	21849762	21850762	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176925, intron 2 of 2)	intron (NM_176925, intron 2 of 2)	-1352.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	0.0	3.0	0.5	0.0	0.0	0.0
Merged-chr4-136173225-2	chr4	136172725	136173725	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177733, intron 1 of 6)	intron (NM_177733, intron 1 of 6)	951.0	NM_177733	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30998531-3	chr5	30998031	30999031	+	792.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	29854.0	NM_053085	69852.0	Mm.57874	NM_053085	ENSMUSG00000006642	Tcf23	2010002O16Rik|Out|bHLHa24	transcription factor 23	protein-coding	6.0	6.0	1.5	1.5	0.0	0.0
Merged-chr2-168002196-2	chr2	168001696	168002696	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080708, intron 2 of 21)	intron (NM_001080708, intron 2 of 21)	8397.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108165813-2	chr6	108165274	108166274	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145937, intron 3 of 8)	Lx5|LINE|L1	19809.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	2.0	3.0	12.0	6.0	10.5	10.0
Merged-chr1-91078876-2	chr1	91078376	91079376	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 5 of 22)	intron (NM_008515, intron 5 of 22)	25432.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-189701224-3	chr1	189700724	189701724	+	792.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13138.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	1.0	7.5	0.5	2.0	2.0	1.0
Merged-chr19-38042980-1	chr19	38042480	38043480	+	792.0	f1_balb.idr	intron (NM_001302140, intron 1 of 53)	intron (NM_001302140, intron 1 of 53)	597.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	26.0	99.0	70.5	63.0	83.5	61.5
Merged-chr11-8622971-2	chr11	8622471	8623471	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	41564.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78954985-2	chr11	78954485	78955485	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313922, intron 22 of 25)	intron (NM_001313922, intron 22 of 25)	29694.0	NM_001313922	18126.0	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121706229-2	chr9	121705729	121706729	+	792.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B3|LTR|ERVL	-1200.0	NM_001164562	215474.0	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-28743734-1	chr12	28743234	28744234	+	792.0	f0_c57.idr	intron (NM_001161410, intron 2 of 11)	L1MA9|LINE|L1	6660.0	NM_001161410	217449.0	Mm.132006	NM_178811	ENSMUSG00000020628	Trappc12	CGI-87|D930014A20Rik|Ttc15	trafficking protein particle complex 12	protein-coding	2.0	4.5	2.0	1.0	0.0	0.5
Merged-chr12-85576715-2	chr12	85576215	85577215	+	792.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22390.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-72232903-2	chr1	72232403	72233403	+	792.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-11090.0	NR_155355	320933.0	Mm.440953	NR_155355		D230017M19Rik	B930094L07Rik	RIKEN cDNA D230017M19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152171725-3	chr4	152171227	152172227	+	792.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-6373.0	NM_133348	70025.0	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80945674-2	chr18	80945174	80946174	+	792.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11616.0	NM_015805	50771.0	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding	0.0	0.0	1.0	0.0	4.0	0.0
Merged-chr7-126790451-2	chr7	126789951	126790951	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019674, intron 2 of 8)	intron (NM_019674, intron 2 of 8)	1913.0	NM_001360464	56420.0	Mm.41998	NM_019674	ENSMUSG00000030697	Ppp4c	1110002D08Rik|AU016079|PP-X|PP4C|Ppx|pp4	protein phosphatase 4, catalytic subunit	protein-coding	0.0	2.5	1.0	0.0	8.5	10.5
Merged-chr4-88458844-3	chr4	88458340	88459340	+	792.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-19914.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	7.5	22.5	4.5	20.5	16.5	5.0
Merged-chr8-27172399-3	chr8	27171960	27172960	+	792.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029423, intron 1 of 4)	intron (NM_029423, intron 1 of 4)	2186.0	NM_029423	75767.0	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91135859-2	chr2	91135359	91136359	+	792.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008653, exon 30 of 32)	exon (NM_008653, exon 30 of 32)	17715.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr11-95821637-8	chr11	95821132	95822132	+	791.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-2868.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7810136-4	chr10	7809631	7810631	+	791.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026141, intron 10 of 12)	intron (NM_026141, intron 10 of 12)	17237.0	NM_026141	67418.0	Mm.38927	NM_026141	ENSMUSG00000015757	Ppil4	3732410E19Rik|3830425H19Rik|AI788954|AW146233|PPIase	peptidylprolyl isomerase (cyclophilin)-like 4	protein-coding	1.0	0.0	0.0	1.5	0.0	1.0
Merged-chr12-86949698-3	chr12	86949184	86950184	+	791.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173735, intron 1 of 3)	intron (NM_173735, intron 1 of 3)	2341.0	NM_001289432	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-95741534-3	chr12	95741014	95742014	+	791.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	49288.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61099958-4	chr18	61099471	61100471	+	791.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-5601.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-144283990-3	chr1	144283491	144284491	+	791.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-34887.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90016850-3	chr3	90016343	90017343	+	791.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165987, intron 17 of 24)	intron (NM_001165987, intron 17 of 24)	-5633.0	NR_106129	102465771.0		NR_106129	ENSMUSG00000098397	Mir7669	Gm27996|mmu-mir-7669	microRNA 7669	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170116894-3	chr2	170116394	170117394	+	791.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033299, intron 2 of 5)	intron (NM_001033299, intron 2 of 5)	14326.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.0	7.5	0.0	1.0	4.5	0.0
Merged-chr17-74017353-4	chr17	74016835	74017835	+	791.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_053188)	TTS (NM_053188)	30581.0	NM_053188	94224.0	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25737062-2	chr7	25736562	25737562	+	791.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178089, intron 7 of 7)	B3|SINE|B2	17697.0	NM_144922	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118097266-2	chr10	118096767	118097767	+	791.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-44520.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	121.5	233.5	167.5	151.0	194.5	187.5
Merged-chr5-148812188-2	chr5	148811693	148812693	+	791.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34230.0	NR_131106	78015.0	Mm.243839	NR_131106	ENSMUSG00000085740	4930505K14Rik	-	RIKEN cDNA 4930505K14 gene	ncRNA	1.0	4.5	0.0	0.0	4.0	5.0
Merged-chr14-51094610-2	chr14	51094016	51095016	+	791.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_021472, intron 1 of 1)	B1_Mur3|SINE|Alu	-1484.0	NM_007447	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	29.0	117.0	40.5	18.0	63.0	43.0
Merged-chr9-107551088-2	chr9	107550588	107551588	+	791.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243748)	promoter-TSS (NM_001243748)	-467.0	NM_001243748	56289.0	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	0.0	0.0	0.0	4.5	0.0	2.0
Merged-chr11-9317512-4	chr11	9316958	9317958	+	791.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 23 of 61)	intron (NM_178259, intron 23 of 61)	125516.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	1.5	0.0	3.0	3.0	0.0	10.5
Merged-chr14-63106926-2	chr14	63106426	63107426	+	791.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15536.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-115710293-3	chr9	115709822	115710822	+	791.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-199133.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	9.0	0.0	2.0	9.0	14.0	12.5
Merged-chr5-31941742-3	chr5	31941238	31942238	+	791.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 7 of 11)	intron (NM_144541, intron 7 of 11)	-194734.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.0	5.0	1.0	1.0	7.0	5.5
Merged-chr11-53853799-3	chr11	53853297	53854297	+	791.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 1 of 3)	intron (NR_033332, intron 1 of 3)	5459.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-64847414-3	chr8	64846916	64847916	+	791.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178633, intron 1 of 14)	intron (NM_178633, intron 1 of 14)	2508.0	NM_178633	77113.0	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|8530402H02Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding	0.0	0.0	0.0	0.5	4.0	0.0
Merged-chr7-34676285-3	chr7	34675794	34676794	+	791.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175140, intron 3 of 3)	intron (NM_175140, intron 3 of 3)	-20785.0	NM_001360818	233107.0	Mm.76761	NM_146188	ENSMUSG00000030499	Kctd15	BC031749	potassium channel tetramerisation domain containing 15	protein-coding	0.0	0.0	0.0	1.0	0.0	2.0
Merged-chr4-123423077-4	chr4	123422575	123423575	+	791.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 52 of 92)	intron (NM_001199137, intron 52 of 92)	-11164.0	NM_001167918	442834.0	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3699034-3	chr12	3698557	3699557	+	791.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 9 of 17)	ORR1D1|LTR|ERVL-MaLR	-107923.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26639160-2	chr2	26638660	26639660	+	791.75	f1_balb.idr|f1_c57bl6.idr	TTS (NR_028571)	TTS (NR_028571)	161.0	NR_028571	100306954.0	Mm.491822	NR_028571	ENSMUSG00000077192	Snora17	ACA17	small nucleolar RNA, H/ACA box 17	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43673787-4	chr19	43673297	43674297	+	791.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145156, intron 1 of 3)	intron (NM_145156, intron 1 of 3)	1084.0	NM_145156	246696.0	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9930460-4	chr19	9929969	9930969	+	791.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-30936.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	29.0	83.0	82.5	42.0	72.5	82.0
Merged-chr17-35170114-2	chr17	35169652	35170652	+	791.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001361501)	TTS (NM_001361501)	-5275.0	NM_020027	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	5.5	13.5	15.0	3.0	12.0	6.5
Merged-chr6-39257030-5	chr6	39256367	39257367	+	791.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-50094.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118545425-4	chr2	118544987	118545987	+	791.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_138603)	promoter-TSS (NR_138603)	-900.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-85051969-2	chr16	85051469	85052469	+	791.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 6 of 15)	MIRb|SINE|MIR	79758.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77236194-3	chr15	77235690	77236690	+	791.700012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053104, intron 1 of 13)	intron (NM_053104, intron 1 of 13)	9418.0	NM_001358772	93686.0	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	0.0	0.0	7.5	0.0	1.0	0.0
Merged-chr6-116014334-4	chr6	116013836	116014836	+	791.69165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19331.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81301359-4	chr15	81300856	81301856	+	791.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49494.0	NR_077230	78102.0	Mm.296832	NR_077229	ENSMUSG00000115970	8430426J06Rik	-	RIKEN cDNA 8430426J06 gene	ncRNA	0.0	0.0	1.0	0.0	0.0	2.0
Merged-chr8-22962856-2	chr8	22962356	22963356	+	791.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	-11980.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	13.0	21.5	20.0	3.0	5.0	2.5
Merged-chr18-57593928-3	chr18	57593432	57594432	+	791.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029290, intron 4 of 6)	intron (NM_029290, intron 4 of 6)	-41535.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3861421-3	chr12	3860880	3861880	+	791.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045884, intron 3 of 3)	intron (NR_045884, intron 3 of 3)	864.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-40144407-3	chr15	40143905	40144905	+	791.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256056, intron 2 of 3)	intron (NM_001256056, intron 2 of 3)	10040.0	NM_001256056	328531.0	Mm.60703	NM_001256056	ENSMUSG00000094112	9330182O14Rik	-	RIKEN cDNA 9330182O14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28350022-3	chr7	28349481	28350481	+	791.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013647)	promoter-TSS (NM_013647)	-708.0	NM_013647	20055.0	Mm.702	NM_013647	ENSMUSG00000037563	Rps16	AA420385|AI317031	ribosomal protein S16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161166399-1	chr1	161165899	161166899	+	791.666687	f0_balb.idr	intron (NM_028664, intron 6 of 6)	intron (NM_028664, intron 6 of 6)	-7085.0	NM_001195189	100502590.0	Mm.449990	NM_001195189	ENSMUSG00000049160	Tex50	4930469G21Rik	testis expressed 50	protein-coding	1.0	8.5	0.5	12.5	7.5	4.5
Merged-chr1-105356582-4	chr1	105356087	105357087	+	791.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151538, exon 1 of 2)	non-coding (NR_151538, exon 1 of 2)	123.0	NM_178779	320311.0	Mm.389162	NM_178779	ENSMUSG00000047496	Rnf152	A930029B02Rik	ring finger protein 152	protein-coding	7.0	1.5	2.0	8.0	3.5	7.5
Merged-chr4-111350959-3	chr4	111350461	111351461	+	791.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284190, intron 6 of 12)	intron (NM_001284190, intron 6 of 12)	-64045.0	NR_033793	67621.0	Mm.45533	NM_026279	ENSMUSG00000028545	Bend5	2310026E23Rik	BEN domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81428287-2	chr10	81427787	81428787	+	791.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1114.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-65149297-2	chr14	65148797	65149797	+	791.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51191.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-72123814-4	chr1	72123313	72124313	+	791.645813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88494.0	NM_001005423	381269.0	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-119473887-2	chr6	119473387	119474387	+	791.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_009525, intron 1 of 4)	MT2A|LTR|ERVL	-5781.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52825268-2	chr13	52824768	52825768	+	791.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68063.0	NR_027893	105404.0	Mm.184173	NR_027893		BB123696	-	expressed sequence BB123696	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139281307-3	chr7	139280852	139281852	+	791.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32870.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	1.0	1.0	8.5	0.0	0.5	5.5
Merged-chr1-152530554-2	chr1	152530054	152531054	+	791.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 14 of 17)	L2a|LINE|L2	94663.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75196300-3	chr8	75195790	75196790	+	791.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17654.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	4.5	2.0	4.0	0.0	2.5	0.5
Merged-chr1-87829831-3	chr1	87829357	87830357	+	791.57782	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009118, intron 10 of 15)	intron (NM_009118, intron 10 of 15)	-23430.0	NM_177646	227333.0	Mm.277217	NM_177646	ENSMUSG00000070738	Dgkd	AI841987|D330025K09|DGKdelta|dgkd-2	diacylglycerol kinase, delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-112803763-3	chr10	112803261	112804261	+	791.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33991.0	NR_152199	100042639.0	Mm.403280	NR_152199		Gm3942	-	predicted gene 3942	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97822084-3	chr7	97821587	97822587	+	791.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357364, intron 1 of 14)	intron (NM_001357364, intron 1 of 14)	-20852.0	NM_001357363	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	1.0	1.5	0.0	0.0	0.5	3.5
Merged-chr13-44952511-3	chr13	44952015	44953015	+	791.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025772, intron 7 of 9)	ORR1D2|LTR|ERVL-MaLR	49581.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64162654-3	chr13	64162190	64163190	+	791.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019986, intron 1 of 7)	intron (NM_019986, intron 1 of 7)	824.0	NM_019986	56541.0	Mm.40989	NM_019986	ENSMUSG00000021476	Habp4	4933413D03Rik|4933428J01Rik	hyaluronic acid binding protein 4	protein-coding	1.0	0.0	0.5	0.0	0.0	0.0
Merged-chr6-125385301-2	chr6	125384837	125385837	+	791.549988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4833.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	4.5	10.5	5.5	2.5	7.5	1.0
Merged-chr5-142899515-6	chr5	142899056	142900056	+	791.544434	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	-4318.0	NM_001033312	231863.0	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135467402-4	chr5	135466873	135467873	+	791.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	MTEa|LTR|ERVL-MaLR	-72827.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65659321-2	chr17	65658821	65659821	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 6 of 6)	intron (NM_133685, intron 6 of 6)	-17117.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35382859-2	chr17	35382360	35383360	+	791.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001143689, exon 4 of 6)	exon (NM_001143689, exon 4 of 6)	3243.0	NM_001143689	15015.0	Mm.464284	NM_001143689	ENSMUSG00000035929	H2-Q4	H-2Q4|H2-Gs10|Qa-4|Qa4|Qat-4|Qb-1|Qb1	histocompatibility 2, Q region locus 4	protein-coding	0.0	2.0	3.5	0.0	3.0	2.0
Merged-chr8-70303583-2	chr8	70303083	70304083	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021538, intron 1 of 9)	intron (NM_021538, intron 1 of 9)	798.0	NM_021538	59042.0	Mm.28668	NM_021538	ENSMUSG00000055681	Cope	1110005D17Rik|Cope1	coatomer protein complex, subunit epsilon	protein-coding	5.0	5.5	2.0	0.0	11.5	5.0
Merged-chr11-98688407-2	chr11	98687907	98688907	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009439, intron 4 of 11)	intron (NM_009439, intron 4 of 11)	5853.0	NM_009439	22123.0	Mm.12194	NM_009439	ENSMUSG00000017221	Psmd3	AI255837|AntP91a|D11Bwg1349e|Psd3|Tstap91a	proteasome (prosome, macropain) 26S subunit, non-ATPase, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-48338751-2	chr7	48338251	48339251	+	791.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49775.0	NM_207539	404240.0	Mm.357942	NM_207539	ENSMUSG00000050870	Mrgprb8	MrgB8	MAS-related GPR, member B8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67816891-2	chr5	67816391	67817391	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	30540.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180761857-2	chr1	180761357	180762357	+	791.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35814.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-83900152-2	chr3	83899652	83900652	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172681, intron 33 of 34)	intron (NM_172681, intron 33 of 34)	-58544.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	5.0
Merged-chr9-77749500-2	chr9	77749000	77750000	+	791.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-5035.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	0.0	1.0	10.5	3.5	2.5	16.0
Merged-chr5-110177310-2	chr5	110176844	110177844	+	791.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040430)	promoter-TSS (NR_040430)	487.0	NM_008146	269682.0	Mm.9392	NM_008146	ENSMUSG00000029502	Golga3	5330413L04|5430416E01Rik|AI449376|AW490576|G1-499-14|Mea-2|Mea2|Mea2/Golga3|repro27	golgi autoantigen, golgin subfamily a, 3	protein-coding	39.5	116.5	80.5	45.5	125.5	92.0
Merged-chr3-53029196-3	chr3	53028632	53029632	+	791.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11909.0	NM_026225	67542.0	Mm.249548	NM_026225	ENSMUSG00000027742	Cog6	4933405E16Rik|AU018618|mKIAA1134	component of oligomeric golgi complex 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6303836-2	chr19	6303336	6304336	+	791.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2621.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101900932-2	chr5	101900432	101901432	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 32 of 66)	intron (NM_172882, intron 32 of 66)	135802.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31700054-2	chr5	31699554	31700554	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181280, intron 1 of 12)	intron (NM_181280, intron 1 of 12)	2004.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76206438-2	chr15	76205938	76206938	+	791.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163540)	promoter-TSS (NM_001163540)	-117.0	NM_001163540	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98542771-3	chr10	98542264	98543264	+	791.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-190897.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101983264-2	chr15	101982764	101983764	+	791.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21078.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12834384-2	chr13	12833884	12834884	+	791.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-34305.0	NM_011118	18812.0	Mm.457984	NM_011118	ENSMUSG00000056457	Prl2c3	Ghd1|MRP-2|MRP-3|Mrpplf3|PLF-2|PLF-3|Plf2|Prl2c4|mrp/plf3	prolactin family 2, subfamily c, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94688245-2	chr11	94687745	94688745	+	791.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-10752.0	NM_145828	217119.0	Mm.100638	NM_145828	ENSMUSG00000020868	Xylt2	E030002B02Rik|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding	15.0	15.0	9.5	18.5	15.0	9.5
Merged-chr12-111163851-2	chr12	111163351	111164351	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_130987, intron 2 of 3)	PB1D10|SINE|Alu	-2519.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-88911070-3	chr18	88910566	88911566	+	791.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16859.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9316759-2	chr18	9316259	9317259	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026484, intron 9 of 9)	intron (NM_026484, intron 9 of 9)	-33950.0	NM_153086	225152.0	Mm.119273	NM_153086	ENSMUSG00000036855	Gjd4	9430022F06Rik|Cx39	gap junction protein, delta 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34645858-2	chr2	34645358	34646358	+	791.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	109374.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105859280-2	chr8	105858780	105859780	+	791.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-1253.0	NM_026532	68051.0	Mm.455474	NM_026532	ENSMUSG00000008450	Nutf2	2700067I02Rik|AI115459|AI413596|AW546000|Ntf2|Ntf3|PP15	nuclear transport factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164073124-2	chr2	164072624	164073624	+	791.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1054.0	NM_021420	58231.0	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-80787669-2	chr8	80787169	80788169	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021356, intron 4 of 9)	intron (NM_021356, intron 4 of 9)	-48210.0	NM_053124	93762.0	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135486144-2	chr3	135485644	135486644	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027288, intron 1 of 16)	intron (NM_027288, intron 1 of 16)	533.0	NM_027288	110173.0	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85494678-2	chr8	85494178	85495178	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173866, intron 2 of 11)	intron (NM_173866, intron 2 of 11)	2061.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44342095-2	chr7	44341595	44342595	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034115, intron 15 of 24)	intron (NM_001034115, intron 15 of 24)	31831.0	NM_001034115	243961.0	Mm.360368	NM_001034115	ENSMUSG00000038738	Shank1	-	SH3 and multiple ankyrin repeat domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-78910526-2	chr1	78910021	78911021	+	791.5	f0_balb.idr|f1_c57bl6.idr	intron (NR_151519, intron 3 of 3)	Lx8|LINE|L1	93610.0	NM_021342	57814.0	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding	0.0	2.0	3.0	5.5	10.5	1.0
Merged-chr12-117427530-2	chr12	117427010	117428010	+	791.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-88969.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	2.0	0.0	17.5	15.0	7.5	0.0
Merged-chr1-174434339-2	chr1	174433848	174434848	+	791.5	f0_balb.idr|f1_balb.idr	Intergenic	RLTR22_Mur|LTR|ERVK	3918.0	NM_146761	258756.0	Mm.223188	NM_146761	ENSMUSG00000051509	Olfr414	MOR103-10	olfactory receptor 414	protein-coding	22.0	1.5	6.5	5.0	24.5	13.5
Merged-chr5-76657866-3	chr5	76657448	76658448	+	791.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	66234.0	NM_199032	381644.0	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148088959-2	chr4	148088459	148089459	+	791.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301281)	promoter-TSS (NM_001301281)	-895.0	NM_001301281	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132612205-2	chr7	132611705	132612705	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 1 of 6)	MTEb|LTR|ERVL-MaLR	1562.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-56571522-2	chr14	56571022	56572022	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001014996, intron 1 of 16)	CpG	324.0	NM_001014996	219103.0	Mm.212525	NM_001014996	ENSMUSG00000064128	Cenpj	4932437H03Rik|CPAP|Gm81|LAP|LIP1|Sas4	centromere protein J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128687141-2	chr8	128686641	128687641	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010578, intron 1 of 15)	intron (NM_010578, intron 1 of 15)	1487.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164881170-1	chr2	164880670	164881670	+	791.5	f1_c57bl6.idr	intron (NM_146129, intron 1 of 16)	intron (NM_146129, intron 1 of 16)	1802.0	NM_146129	228866.0	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	3.5	8.5	9.5	2.5	9.5	2.5
Merged-chr10-25361547-2	chr10	25361100	25362100	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 1 of 16)	intron (NM_001358754, intron 1 of 16)	1802.0	NM_001358751	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	2.5	18.5	7.0	3.0	7.0	7.0
Merged-chr15-72873256-4	chr15	72872753	72873753	+	791.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164642, intron 16 of 16)	L1MB5|LINE|L1	-62929.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0.0	7.5	4.0	0.5	4.5	15.0
Merged-chr10-67027676-2	chr10	67027176	67028176	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_110511, intron 2 of 6)	intron (NR_110511, intron 2 of 6)	22601.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-69176666-2	chr17	69176166	69177166	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	17310.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91204092-2	chr2	91203592	91204592	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357067, intron 2 of 10)	B1_Mur3|SINE|Alu	1180.0	NM_007387	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88158718-2	chr3	88158218	88159218	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310593, intron 4 of 10)	intron (NM_001310593, intron 4 of 10)	16346.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120594545-2	chr5	120594045	120595045	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029408, intron 1 of 4)	RSINE1|SINE|B4	5522.0	NM_029408	75732.0	Mm.425285	NM_029408	ENSMUSG00000029601	Iqcd	4933433C09Rik|AI662646	IQ motif containing D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114926514-2	chr6	114926014	114927014	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	-4693.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-80191816-3	chr1	80191302	80192302	+	791.483337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	22142.0	NM_173425	241128.0	Mm.145511	NM_173425	ENSMUSG00000043230	Fam124b	A830043J08Rik	family with sequence similarity 124, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61612682-3	chr8	61612108	61613108	+	791.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	-21439.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.0	0.0	5.5	0.0	0.0	6.5
Merged-chr9-123853733-3	chr9	123853255	123854255	+	791.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011798, exon 2 of 2)	3' UTR (NM_011798, exon 2 of 2)	-1856.0	NM_001110253	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24856687-3	chr7	24856196	24857196	+	791.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12995.0	NM_182785	232973.0	Mm.189648	NM_182785	ENSMUSG00000062732	Lypd4	4933400F01Rik	Ly6/Plaur domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120280403-4	chr14	120279950	120280950	+	791.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	4781.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	3.0	12.0	1.5	3.0	14.0	7.5
Merged-chr1-181246680-5	chr1	181246219	181247219	+	791.41333	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-34741.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27669517-2	chr15	27669017	27670017	+	791.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	12025.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161359534-3	chr1	161359024	161360024	+	791.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35914.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	9.0	5.0	14.0	8.0	8.5	33.0
Merged-chr3-133086075-4	chr3	133085582	133086582	+	791.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356309, intron 1 of 11)	intron (NM_001356309, intron 1 of 11)	5743.0	NM_026231	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51855474-4	chr14	51854976	51855976	+	791.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_053111)	TTS (NM_053111)	1478.0	NM_017385	53873.0	Mm.221324	NM_017385		Ear7	mR7	eosinophil-associated, ribonuclease A family, member 7	protein-coding	2.5	8.5	5.0	6.5	7.5	10.0
Merged-chr14-55747612-2	chr14	55747112	55748112	+	791.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026403, intron 2 of 9)	Lx5c|LINE|L1	1919.0	NM_026403	67842.0	Mm.180338	NM_026403	ENSMUSG00000019297	Nop9	2610027L16Rik	NOP9 nucleolar protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71898648-2	chr2	71898148	71899148	+	791.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360002, intron 10 of 10)	intron (NM_001360002, intron 10 of 10)	23744.0	NM_001360002	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	0.5	0.0	1.0	0.0	0.0	6.0
Merged-chr5-140508193-2	chr5	140507693	140508693	+	791.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_021528, intron 1 of 1)	RLTR17B_Mm|LTR|ERVK	2584.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127354099-2	chr10	127353607	127354607	+	791.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2259.0	NM_008382	16326.0	Mm.3510	NM_008382	ENSMUSG00000047492	Inhbe	-	inhibin beta-E	protein-coding	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98655272-2	chr11	98654772	98655772	+	791.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029727, intron 8 of 10)	intron (NM_029727, intron 8 of 10)	8513.0	NM_029727	76758.0	Mm.159149	NM_029727	ENSMUSG00000017211	Gsdma2	2200001G21Rik|2210006M16Rik|2210009F20Rik|2210411P14Rik|Gsdm2|Gsdml2	gasdermin A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-94178526-2	chr2	94178026	94179026	+	791.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20617.0	NM_019657	56348.0	Mm.22505	NM_019657	ENSMUSG00000027195	Hsd17b12	2610510O05Rik|AI172963|KIK-I|Kik1	hydroxysteroid (17-beta) dehydrogenase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70599737-2	chr8	70599237	70600237	+	791.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_133772, exon 7 of 17)	exon (NM_133772, exon 7 of 17)	5256.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	1.0	3.0	3.0	2.5	1.0	8.0
Merged-chr11-61518145-3	chr11	61517643	61518643	+	791.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010148, exon 10 of 10)	3' UTR (NM_010148, exon 10 of 10)	12999.0	NM_001330781	27078.0	Mm.261226	NM_013717	ENSMUSG00000001039	B9d1	AW045994|B9|Eppb9	B9 protein domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155216863-4	chr4	155216353	155217353	+	791.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	5682.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	5.5	10.0	12.5	5.0	26.5	23.0
Merged-chr8-40151084-1	chr8	40150584	40151584	+	791.333313	f0_balb.idr	Intergenic	Intergenic	135869.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	0.0	3.5	1.0	0.0	4.5	1.5
Merged-chr16-58480449-3	chr16	58479865	58480865	+	791.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 6 of 10)	intron (NM_001357433, intron 6 of 10)	43061.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-126746635-3	chr3	126746149	126747149	+	791.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_001025438, intron 4 of 18)	intron (NM_001025438, intron 4 of 18)	149698.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	5.0	5.0	3.0	5.5	0.0	3.5
Merged-chr7-80554920-3	chr7	80554396	80555396	+	791.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19777.0	NM_001042527	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	3.0	11.0	2.5	0.0	6.0	6.5
Merged-chr4-133153831-3	chr4	133153322	133154322	+	791.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	23189.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	52.5	190.0	132.5	45.0	89.0	110.0
Merged-chr8-24546478-4	chr8	24545977	24546977	+	791.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145949, intron 7 of 9)	intron (NM_145949, intron 7 of 9)	29856.0	NM_145949	209176.0	Mm.219580	NM_145949	ENSMUSG00000031549	Ido2	AI265623|C230043N17Rik|Ido-2|Indol1	indoleamine 2,3-dioxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93871036-3	chr2	93870534	93871534	+	791.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1877.0	NM_001033452	381411.0	Mm.9889	NM_001033452	ENSMUSG00000075023	Accsl	Gm1967	1-aminocyclopropane-1-carboxylate synthase (non-functional)-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111895035-3	chr13	111894554	111895554	+	791.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCC)n|Simple_repeat|Simple_repeat	27118.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118862924-4	chr10	118862419	118863419	+	791.270813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014390, intron 2 of 2)	intron (NM_001014390, intron 2 of 2)	5984.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	41.5	74.0	46.0	36.5	68.5	61.0
Merged-chr9-19621433-2	chr9	19620948	19621948	+	791.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172918)	promoter-TSS (NM_172918)	-643.0	NM_172918	244713.0	Mm.67366	NM_172918	ENSMUSG00000057551	Zfp317	4932416G03|D230022C05Rik|KRAB9|Zfp67|Zfp75|mszf40	zinc finger protein 317	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100703689-2	chr11	100703189	100704189	+	791.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_030150, exon 3 of 13)	exon (NM_030150, exon 3 of 13)	582.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-35164478-4	chr4	35163992	35164992	+	791.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7008.0	NM_178061	214944.0	Mm.32968	NM_178061	ENSMUSG00000073910	Mob3b	8430436F23Rik|A430018A01Rik|Mobkl2b	MOB kinase activator 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167066878-2	chr2	167066378	167067378	+	791.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1585.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118169095-2	chr11	118168595	118169595	+	791.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001112699, exon 12 of 13)	exon (NM_001112699, exon 12 of 13)	-39876.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81012255-2	chr15	81011755	81012755	+	791.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_134091)	TTS (NM_134091)	34490.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20182408-4	chr13	20181911	20182911	+	791.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	91904.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	16.5	33.0	33.0	1.5	30.0	24.0
Merged-chr7-123367842-4	chr7	123367314	123368314	+	791.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	2101.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-89860404-4	chr5	89859942	89860942	+	791.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081401, intron 3 of 21)	intron (NM_001081401, intron 3 of 21)	22892.0	NM_177872	330119.0	Mm.133062	NM_177872	ENSMUSG00000043635	Adamts3	1100001H14Rik|6330442E02Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	protein-coding	2.0	1.0	2.5	3.0	2.5	4.5
Merged-chr10-117221080-4	chr10	117220581	117221581	+	791.237488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026570, intron 2 of 6)	intron (NM_026570, intron 2 of 6)	3426.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-16580240-3	chr12	16579780	16580780	+	791.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355598, intron 2 of 20)	intron (NM_001355598, intron 2 of 20)	9490.0	NM_015763	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	4.0	7.5	12.0	3.0	29.5	12.5
Merged-chr12-108657582-3	chr12	108657098	108658098	+	791.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 4 of 14)	intron (NM_001163396, intron 4 of 14)	-1022.0	NR_029771	723909.0		NR_029771	ENSMUSG00000065436	Mir342	Mirn342|mmu-mir-342	microRNA 342	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96963768-4	chr11	96963271	96964271	+	791.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_003293, exon 6 of 6)	non-coding (NR_003293, exon 6 of 6)	13917.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr19-6058913-2	chr19	6058418	6059418	+	791.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_007990, intron 3 of 4)	intron (NM_007990, intron 3 of 4)	951.0	NM_001190436	14109.0	Mm.329631	NM_007990	ENSMUSG00000038274	Fau	MNSFbeta	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived)	protein-coding	31.0	95.5	54.5	25.5	86.5	51.0
Merged-chr4-132777021-3	chr4	132776559	132777559	+	791.133362	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011284, intron 8 of 8)	(TG)n|Simple_repeat|Simple_repeat	8699.0	NM_011284	19891.0	Mm.2870	NM_011284	ENSMUSG00000028884	Rpa2	AA409079|AI325195|AU020965|RPA34|Rf-A2	replication protein A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-22042512-4	chr13	22041993	22042993	+	791.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178198)	promoter-TSS (NM_178198)	456.0	NM_178186	319167.0	Mm.263165	NM_178186	ENSMUSG00000069301	Hist1h2ag	-	histone cluster 1, H2ag	protein-coding	2.0	27.5	16.5	6.5	19.0	14.5
Merged-chr8-26687802-4	chr8	26687306	26688306	+	791.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136617.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95228266-4	chr3	95227727	95228727	+	791.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172395)	promoter-TSS (NM_172395)	-197.0	NM_172395	57912.0	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70891578-3	chr9	70891074	70892074	+	791.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	43234.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-49772595-3	chr18	49772090	49773090	+	791.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16989.0	NM_026854	68857.0	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43046772-2	chr4	43046272	43047272	+	791.083374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172691)	promoter-TSS (NM_172691)	-552.0	NM_172691	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	4.5	8.5	12.5	11.5	33.5	12.0
Merged-chr17-85458226-3	chr17	85457717	85458717	+	791.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028576, exon 11 of 11)	3' UTR (NM_028576, exon 11 of 11)	160179.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55098761-4	chr19	55098211	55099211	+	791.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356285, intron 3 of 22)	intron (NM_001356285, intron 3 of 22)	766.0	NM_008149	14732.0	Mm.210196	NM_008149	ENSMUSG00000024978	Gpam	GPAT|GPAT-1|GPAT1|P90	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128320639-4	chr7	128320140	128321140	+	791.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID|SINE|ID	-22509.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107601494-1	chr9	107600994	107601994	+	791.0	f1_balb.idr	non-coding (NR_111986, exon 11 of 18)	non-coding (NR_111986, exon 11 of 18)	3908.0	NM_009153	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr10-111367483-2	chr10	111366983	111367983	+	791.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68804.0	NM_027914	71769.0	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75507098-2	chr18	75506598	75507598	+	791.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 9 of 11)	intron (NM_201354, intron 9 of 11)	-7547.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	0.0	0.0	3.5	0.0	1.0	2.0
Merged-chr15-58871598-2	chr15	58871098	58872098	+	791.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1051.0	NM_026642	68260.0	Mm.278805	NM_026642	ENSMUSG00000037085	Trmt12	4632406N01Rik|AI449275|Tyw2	tRNA methyltranferase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139838628-3	chr5	139838142	139839142	+	791.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11748.0	NM_025604	66506.0	Mm.29070	NM_025604	ENSMUSG00000029551	Psmg3	1810042K04Rik|4930403H09Rik|AI303239	proteasome (prosome, macropain) assembly chaperone 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13215035-2	chr16	13214535	13215535	+	791.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-41446.0	NM_001122667	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-86800932-2	chr5	86800432	86801432	+	791.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-3334.0	NM_001347375	231386.0	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-65646150-2	chr7	65645650	65646650	+	791.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172310, intron 1 of 18)	intron (NM_172310, intron 1 of 18)	1252.0	NM_172310	272396.0	Mm.35127	NM_172310	ENSMUSG00000030515	Tarsl2	A530046H20Rik	threonyl-tRNA synthetase-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135170649-2	chr5	135170149	135171149	+	791.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009745, intron 1 of 5)	intron (NM_009745, intron 1 of 5)	2277.0	NM_009745	12054.0	Mm.405834	NM_009745	ENSMUSG00000029681	Bcl7b	-	B cell CLL/lymphoma 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37434163-2	chr19	37433663	37434663	+	791.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008245)	promoter-TSS (NM_008245)	-678.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	0.0	0.5	0.0	0.0	8.5	0.0
Merged-chr3-96217157-2	chr3	96216657	96217657	+	791.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-2759.0	NM_178213	621893.0		NM_178213	ENSMUSG00000063689	Hist2h2ab	EG621893|H2a-613a	histone cluster 2, H2ab	protein-coding	2.5	2.0	0.0	2.0	0.0	9.0
Merged-chr14-31137925-2	chr14	31137425	31138425	+	791.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027289, intron 9 of 12)	intron (NM_027289, intron 9 of 12)	3072.0	NM_027289	70021.0	Mm.261681	NM_027289	ENSMUSG00000071547	Nt5dc2	2510015F01Rik	5'-nucleotidase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57881003-4	chr15	57880507	57881507	+	791.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024207, intron 2 of 7)	intron (NM_024207, intron 2 of 7)	11411.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-97934230-2	chr16	97933730	97934730	+	791.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11597.0	NM_174847	207781.0	Mm.1465	NM_174847	ENSMUSG00000045975	C2cd2	5730563M15|5830404H04Rik|AI314146|AI449533|BF168443|ORF25|mKIAA4045	C2 calcium-dependent domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127184223-2	chr7	127183723	127184723	+	791.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11854.0	NM_001285907	70233.0	Mm.28050	NM_027353	ENSMUSG00000042502	Cd2bp2	1500011B02Rik|2410024K20Rik|AW048183	CD2 antigen (cytoplasmic tail) binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8323386-3	chr10	8322889	8323889	+	791.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 3 of 7)	intron (NM_177387, intron 3 of 7)	195436.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84820422-2	chr10	84819922	84820922	+	791.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024918, intron 4 of 17)	intron (NM_001024918, intron 4 of 17)	-17726.0	NM_027689	71137.0	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	0.0	12.5	2.5	0.0	0.0	1.0
Merged-chr3-103860797-1	chr3	103860297	103861297	+	791.0	f1_c57bl6.idr	intron (NR_104070, intron 3 of 22)	intron (NR_104070, intron 3 of 22)	520.0	NM_008979	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	55.0	130.5	100.5	56.0	139.5	80.5
Merged-chr4-126022644-2	chr4	126022144	126023144	+	791.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2015.0	NR_045561	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8712686-3	chr15	8712174	8713174	+	791.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1867.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-16862037-2	chr4	16861537	16862537	+	791.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	697927.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-62994140-2	chr2	62993640	62994640	+	791.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133207, intron 2 of 15)	Lx3A|LINE|L1	190147.0	NM_133207	170738.0	Mm.242532	NM_133207	ENSMUSG00000059742	Kcnh7	9330137I11Rik|Kv11.3|erg3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123531079-2	chr9	123530579	123531579	+	791.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357485, intron 1 of 19)	intron (NM_001357485, intron 1 of 19)	1326.0	NM_030692	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91936660-2	chr2	91936160	91937160	+	791.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166597, intron 24 of 31)	intron (NM_001166597, intron 24 of 31)	-4363.0	NM_010784	17242.0	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr1-84030557-2	chr1	84030057	84031057	+	791.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	188404.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-85295251-2	chr13	85294751	85295751	+	791.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5765.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-22579383-1	chr17	22578883	22579883	+	791.0	f1_balb.idr	Intergenic	Intergenic	-6110.0	NM_001104573	210876.0	Mm.390947	NM_001104573	ENSMUSG00000095093	Vmn2r111	EG210876|V2rp2	vomeronasal 2, receptor 111	protein-coding	0.0	5.0	2.5	1.5	0.0	1.0
Merged-chr11-6655135-2	chr11	6654637	6655637	+	791.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028586, intron 3 of 5)	intron (NR_028586, intron 3 of 5)	-3396.0	NM_019511	56089.0	Mm.39884	NM_019511	ENSMUSG00000041046	Ramp3	AI850306	receptor (calcitonin) activity modifying protein 3	protein-coding	0.0	0.0	0.5	2.5	0.0	0.0
Merged-chr4-154936036-2	chr4	154935536	154936536	+	791.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7959.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90458835-2	chr2	90458335	90459335	+	791.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 9 of 23)	intron (NM_008982, intron 9 of 23)	20339.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-63136393-1	chr11	63135893	63136893	+	791.0	f0_balb.idr	intron (NM_001302255, intron 3 of 4)	intron (NM_001302255, intron 3 of 4)	3590.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-176000101-2	chr1	175999601	176000601	+	791.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357846, intron 4 of 8)	intron (NM_001357846, intron 4 of 8)	79772.0	NM_001290692	226720.0	Mm.11282	NM_001290692	ENSMUSG00000104158	Becn2	Beclin-2|Gm104	beclin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120013435-1	chr9	120012935	120013935	+	791.0	f1_balb.idr	TTS (NM_011724)	TTS (NM_011724)	10163.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	1.5	4.0	3.5	0.0	0.0	0.0
Merged-chr13-114079983-2	chr13	114079483	114080483	+	791.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 4 of 4)	intron (NM_172595, intron 4 of 4)	71609.0	NR_045836	319803.0	Mm.386896	NM_177004	ENSMUSG00000114213	A430090L17Rik	-	RIKEN cDNA A430090L17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-27303353-1	chr12	27302853	27303853	+	791.0	f0_balb.idr	Intergenic	Intergenic	39365.0	NM_009234	20666.0	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	5.0	2.0	2.0	0.0	0.0	0.0
Merged-chr11-6497400-1	chr11	6496900	6497900	+	791.0	f1_c57bl6.idr	Intergenic	Intergenic	-21324.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	38.5	41.0	38.5	7.0	15.0	4.5
Merged-chr14-107849626-2	chr14	107849126	107850126	+	791.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44A|LTR|ERVK	1064613.0	NM_199065	76965.0	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43877100-2	chr5	43876584	43877584	+	791.0	f0_balb.idr|f0_c57.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	8275.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91917413-2	chr2	91916913	91917913	+	791.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172669, exon 18 of 18)	exon (NM_172669, exon 18 of 18)	-4776.0	NM_007699	12672.0	Mm.330405	NM_007699	ENSMUSG00000040495	Chrm4	Chrm-4|M4	cholinergic receptor, muscarinic 4	protein-coding	0.0	1.5	3.0	0.0	1.5	1.0
Merged-chr13-99375794-3	chr13	99375310	99376310	+	791.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173757, intron 4 of 10)	intron (NM_173757, intron 4 of 10)	31024.0	NM_173757	218506.0	Mm.30208	NM_173757	ENSMUSG00000041632	Mrps27	2610028H14Rik	mitochondrial ribosomal protein S27	protein-coding	4.0	6.0	1.5	0.0	0.0	2.5
Merged-chr4-41571556-2	chr4	41570993	41571993	+	791.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175138, intron 1 of 19)	intron (NM_175138, intron 1 of 19)	1699.0	NM_175138	68922.0	Mm.79127	NM_175138	ENSMUSG00000061322	Dnaic1	1110066F04Rik|BB124644|Dnai1|b2b1526Clo	dynein, axonemal, intermediate chain 1	protein-coding	0.0	4.5	2.5	1.5	0.0	8.5
Merged-chr9-22084545-2	chr9	22084045	22085045	+	791.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253897, intron 1 of 8)	(T)n|Simple_repeat|Simple_repeat	882.0	NM_001253898	26940.0	Mm.425568	NM_012029	ENSMUSG00000066839	Ecsit	Sitpec	ECSIT signalling integrator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-53590626-2	chr6	53590126	53591126	+	791.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172728, intron 1 of 6)	intron (NM_172728, intron 1 of 6)	17252.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67709832-2	chr10	67709332	67710332	+	791.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-137873.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107138763-1	chr3	107138263	107139263	+	791.0	f1_balb.idr	Intergenic	Intergenic	37196.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	8.0	15.0	6.5	8.0	7.5	2.5
Merged-chr6-125527822-3	chr6	125527308	125528308	+	791.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25140.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	6.5	9.0	10.0	1.0	1.5	0.0
Merged-chr11-26129178-3	chr11	26128683	26129683	+	791.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027973, intron 1 of 5)	BGLII|LTR|ERVK	-73057.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	6.0	12.5	19.5	7.0	15.5	11.0
Merged-chr7-102013599-2	chr7	102013099	102014099	+	791.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133947, exon 23 of 25)	exon (NM_133947, exon 23 of 25)	4556.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110851533-3	chr12	110851014	110852014	+	790.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028365, intron 1 of 7)	intron (NM_028365, intron 1 of 7)	1235.0	NM_028365	72805.0	Mm.443524	NM_028365	ENSMUSG00000021271	Zfp839	2810455K09Rik	zinc finger protein 839	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-92485043-3	chr9	92484505	92485505	+	790.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178711, intron 6 of 8)	intron (NM_178711, intron 6 of 8)	27627.0	NM_178711	235527.0	Mm.55289	NM_178711	ENSMUSG00000032377	Plscr4	AV245873	phospholipid scramblase 4	protein-coding	0.0	6.0	2.5	0.0	2.5	4.0
Merged-chr3-37654414-4	chr3	37654126	37655126	+	790.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14679.0	NM_011896	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70775884-5	chr8	70775463	70776463	+	790.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029440)	promoter-TSS (NR_029440)	749.0	NM_008841	18709.0	Mm.12945	NM_008841	ENSMUSG00000031834	Pik3r2	p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding	2.5	17.0	3.5	1.5	12.0	2.0
Merged-chr11-88997359-4	chr11	88996745	88997745	+	790.919678	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2158.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	1.0	8.0	17.5	4.0	15.0	30.0
Merged-chr10-25200173-4	chr10	25199679	25200679	+	790.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347460)	promoter-TSS (NM_001347460)	-9.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-97474688-3	chr13	97474183	97475183	+	790.916687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110432, intron 1 of 1)	intron (NR_110432, intron 1 of 1)	-8018.0	NR_110430	100039691.0	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	0.0	4.0	3.5	0.0	9.5	2.0
Merged-chr15-76537887-3	chr15	76537393	76538393	+	790.899963	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013909, intron 2 of 8)	intron (NM_013909, intron 2 of 8)	853.0	NM_013909	30840.0	Mm.275279	NM_013909	ENSMUSG00000022559	Fbxl6	AU021795|Fbl6	F-box and leucine-rich repeat protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122369775-3	chr8	122369274	122370274	+	790.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6835.0	NM_001310650	76014.0	Mm.241489	NM_001029993	ENSMUSG00000017478	Zc3h18	1190001B23Rik|5830416A07Rik|Nhn1	zinc finger CCCH-type containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-151994398-3	chr2	151993897	151994897	+	790.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-2114.0	NM_027172	69698.0	Mm.258262	NM_027172	ENSMUSG00000027463	Slc52a3	2310046K01Rik|RFT2	solute carrier protein family 52, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-83771638-3	chr2	83771142	83772142	+	790.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008402, intron 12 of 29)	intron (NM_008402, intron 12 of 29)	-41086.0	NM_175514	241520.0	Mm.330351	NM_175514	ENSMUSG00000048388	Fam171b	D430039N05Rik	family with sequence similarity 171, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109413288-4	chr11	109412775	109413775	+	790.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-12671.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6526857-3	chr11	6526357	6527357	+	790.866638	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045893, intron 2 of 3)	B2_Mm2|SINE|B2	1903.0	NR_045893	100041286.0	Mm.459507	NR_045893	ENSMUSG00000085156	Snhg15	Gm11974	small nucleolar RNA host gene 15	ncRNA	7.5	31.5	15.5	8.5	32.0	13.0
Merged-chr2-90547509-4	chr2	90547002	90548002	+	790.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	33145.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	18.5	12.0	9.5	18.5	12.0	11.0
Merged-chr5-45526524-3	chr5	45526023	45527023	+	790.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025895, exon 4 of 4)	3' UTR (NM_025895, exon 4 of 4)	6294.0	NM_025895	66999.0	Mm.283045	NM_025895	ENSMUSG00000015804	Med28	1500003D12Rik|AI451633|AU045690|Eg1|FKSG20|magicin	mediator complex subunit 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-84348101-3	chr13	84347610	84348610	+	790.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125814.0	NM_175187	72745.0	Mm.295063	NM_175187	ENSMUSG00000035762	Tmem161b	2810446P07Rik|AI843389	transmembrane protein 161B	protein-coding	0.0	0.0	0.0	0.5	2.0	1.0
Merged-chr1-89302720-3	chr1	89302206	89303206	+	790.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103427.0	NR_040482	77331.0	Mm.374962	NR_040482	ENSMUSG00000099938	C030007H22Rik	-	RIKEN cDNA C030007H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-56173279-4	chr13	56172752	56173752	+	790.820801	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001168615)	TTS (NM_001168615)	5633.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	1.0	19.5	7.0	15.0	14.5	17.5
Merged-chr19-36410281-3	chr19	36409799	36410799	+	790.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029508, intron 1 of 8)	CpG	31232.0	NM_029508	76073.0	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	0.0	0.0	2.5	2.0	2.0	1.5
Merged-chr5-64866827-3	chr5	64866329	64867329	+	790.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63306.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-94986658-2	chr6	94986158	94987158	+	790.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42824.0	NR_040761	78773.0	Mm.67065	NR_040761	ENSMUSG00000108187	4930511E03Rik	-	RIKEN cDNA 4930511E03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-16080531-4	chr4	16080115	16081115	+	790.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-66727.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118986858-4	chr14	118986341	118987341	+	790.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081252, exon 39 of 39)	3' UTR (NM_001081252, exon 39 of 39)	48909.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	0.0	3.0	0.5	0.0	0.0	2.0
Merged-chr9-94982269-2	chr9	94981771	94982771	+	790.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 9 of 15)	intron (NM_177909, intron 9 of 15)	230442.0	NR_106116	102465763.0		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	3.5	4.0	6.0	17.5	16.0	7.0
Merged-chr9-104306972-4	chr9	104306459	104307459	+	790.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019807, exon 9 of 11)	exon (NM_019807, exon 9 of 11)	30763.0	NM_019807	56318.0	Mm.19941	NM_019807	ENSMUSG00000032561	Acpp	5'-NT|A030005E02Rik|FRAP|Lap|PAP|Ppal	acid phosphatase, prostate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45022817-2	chr2	45022317	45023317	+	790.75	f1_balb.idr|f1_c57bl6.idr	TTS (NR_039591)	TTS (NR_039591)	360.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34116327-2	chr17	34115827	34116827	+	790.75	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037970, exon 4 of 13)	non-coding (NR_037970, exon 4 of 13)	3573.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	0.5	9.0	6.0	0.0	1.0	3.0
Merged-chr3-83886770-2	chr3	83886270	83887270	+	790.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45162.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27046811-4	chr17	27046256	27047256	+	790.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10548.0	NM_080553	16440.0	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	2.0	3.0	4.0	13.0	9.0	4.0
Merged-chr17-34005644-4	chr17	34005130	34006130	+	790.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV-int|LTR|ERVK	-5283.0	NM_001347346	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	12.5	22.0	18.0	3.0	1.0	2.0
Merged-chr14-45687355-4	chr14	45686851	45687851	+	790.700012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29208.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	9.5	19.0	17.0	0.0	5.0	6.5
Merged-chr6-52213407-3	chr6	52212868	52213868	+	790.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010452)	promoter-TSS (NM_010452)	-301.0	NM_010452	15400.0	Mm.71533	NM_010452	ENSMUSG00000079560	Hoxa3	Hox-1.5|Mo-10	homeobox A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111289219-3	chr9	111288743	111289743	+	790.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17398.0	NM_175266	77781.0	Mm.209005	NM_175266	ENSMUSG00000046785	Epm2aip1	A930003G21Rik|mKIAA0766	EPM2A (laforin) interacting protein 1	protein-coding	39.5	56.5	37.0	64.0	60.5	47.0
Merged-chr13-97254908-3	chr13	97254414	97255414	+	790.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13809.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-57489166-2	chr8	57488666	57489666	+	790.666687	f1_balb.idr|f1_c57bl6.idr	intron (NR_126553, intron 1 of 3)	ORR1A2-int|LTR|ERVL-MaLR	1203.0	NR_126555	78353.0	Mm.426240	NR_126553	ENSMUSG00000096917	2500002B13Rik	-	RIKEN cDNA 2500002B13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64312087-3	chr5	64311538	64312538	+	790.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 12 of 18)	intron (NM_001289514, intron 12 of 18)	81681.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.0	5.5	4.0	0.0	3.5	0.0
Merged-chr13-58488098-3	chr13	58487589	58488589	+	790.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84746.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35293767-3	chr12	35293275	35294275	+	790.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98878.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	40.5	47.5	40.5	21.0	51.0	34.5
Merged-chr1-53873875-4	chr1	53873382	53874382	+	790.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 17 of 28)	intron (NM_001001883, intron 17 of 28)	24458.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	5.5	5.0	2.5	4.5	7.0	1.0
Merged-chr11-6527913-2	chr11	6527413	6528413	+	790.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_045893, intron 2 of 3)	intron (NR_045893, intron 2 of 3)	847.0	NR_045893	100041286.0	Mm.459507	NR_045893	ENSMUSG00000085156	Snhg15	Gm11974	small nucleolar RNA host gene 15	ncRNA	9.5	84.0	44.5	21.0	76.5	69.5
Merged-chr12-69366779-2	chr12	69366279	69367279	+	790.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5371.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-45757072-4	chr16	45756560	45757560	+	790.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357078, intron 14 of 16)	intron (NM_001357078, intron 14 of 16)	-14105.0	NM_172511	213012.0	Mm.247453	NM_172511	ENSMUSG00000033157	Abhd10	-	abhydrolase domain containing 10	protein-coding	9.5	13.5	16.0	7.5	13.0	4.0
Merged-chr13-5866858-4	chr13	5866367	5867367	+	790.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011803, intron 3 of 3)	intron (NM_011803, intron 3 of 3)	5378.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-58383455-4	chr10	58382958	58383958	+	790.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201242, intron 1 of 9)	intron (NM_201242, intron 1 of 9)	-10915.0	NM_001193303	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148657867-4	chr4	148657344	148658344	+	790.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085505, intron 3 of 10)	intron (NM_001085505, intron 3 of 10)	14527.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	20.5	45.0	39.0	2.5	12.5	4.5
Merged-chr14-70407699-2	chr14	70407199	70408199	+	790.583313	f1_balb.idr|f1_c57bl6.idr	intron (NM_021308, intron 10 of 22)	intron (NM_021308, intron 10 of 22)	21395.0	NM_021308	57746.0	Mm.85253	NM_021308	ENSMUSG00000033644	Piwil2	Piwil1l|mili	piwi-like RNA-mediated gene silencing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142816715-5	chr5	142816235	142817235	+	790.580017	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178242, intron 1 of 15)	CpG-11746	652.0	NM_178242	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16242289-4	chr7	16241763	16242763	+	790.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146005)	promoter-TSS (NM_001146005)	68.0	NM_001146005	319430.0	Mm.239570	NM_176912	ENSMUSG00000074361	C5ar2	C5L2|E030029A11Rik|Gpr77	complement component 5a receptor 2	protein-coding	56.0	186.0	80.0	51.0	91.5	74.0
Merged-chr8-122333321-3	chr8	122332819	122333819	+	790.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009569, intron 5 of 9)	intron (NM_009569, intron 5 of 9)	29509.0	NM_133202	170732.0	Mm.154808	NM_133202	ENSMUSG00000039079	Trhr2	TRH-R2	thyrotropin releasing hormone receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-60582287-3	chr3	60581788	60582788	+	790.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	81109.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	4.5	8.5	13.0	1.5	8.0	4.0
Merged-chr7-101845341-3	chr7	101844843	101845843	+	790.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303231)	promoter-TSS (NM_001303231)	-12.0	NM_008035	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83615699-4	chr11	83615202	83616202	+	790.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 5 of 8)	intron (NR_036453, intron 5 of 8)	-22615.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-77227356-4	chr1	77226874	77227874	+	790.520813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	269394.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	2.0	5.0	11.0	0.0	1.0	5.5
Merged-chr2-36135712-2	chr2	36135212	36136212	+	790.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026422)	promoter-TSS (NM_026422)	-686.0	NM_026422	67871.0	Mm.378232	NM_026422	ENSMUSG00000026887	Mrrf	2400002D02Rik|MRFF|MTRRF|RRF	mitochondrial ribosome recycling factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104121586-2	chr8	104121086	104122086	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 2 of 11)	RCHARR1|DNA|hAT-Charlie	-15713.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54431789-1	chr14	54431289	54432289	+	790.5	f0_c57.idr	5' UTR (NM_008608, exon 1 of 10)	5' UTR (NM_008608, exon 1 of 10)	191.0	NM_008608	17387.0	Mm.280175	NM_008608	ENSMUSG00000000957	Mmp14	AI325305|MMP-X1|MT-MMP-1|MT1-MMP|sabe	matrix metallopeptidase 14 (membrane-inserted)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144569314-2	chr3	144568814	144569814	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355234, intron 1 of 6)	intron (NM_001355234, intron 1 of 6)	902.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-60688844-2	chr14	60688344	60689344	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033272, intron 1 of 12)	intron (NM_001033272, intron 1 of 12)	-44060.0	NM_001310594	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	7.5	0.0	0.0	1.0	0.0	3.5
Merged-chr7-141633988-2	chr7	141633488	141634488	+	790.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001330001)	TTS (NM_001330001)	13287.0	NR_106030	102466798.0		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3372114-2	chr12	3371614	3372614	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008445, intron 1 of 7)	intron (NM_008445, intron 1 of 7)	6982.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44916460-2	chr9	44915960	44916960	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013795, intron 1 of 2)	B3A|SINE|B2	4282.0	NM_013795	27425.0	Mm.14663	NM_013795	ENSMUSG00000038717	Atp5l	4933437C06Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26213734-1	chr17	26213234	26214234	+	790.5	f1_c57bl6.idr	intron (NM_001357894, intron 12 of 12)	intron (NM_001357894, intron 12 of 12)	10793.0	NM_001081069	50782.0	Mm.109840	NM_001081069	ENSMUSG00000024186	Rgs11	C78048	regulator of G-protein signaling 11	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr13-111964356-2	chr13	111963856	111964856	+	790.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96420.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0.0	0.0	0.0	3.0	0.0	0.5
Merged-chr8-70545214-2	chr8	70544714	70545714	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	5539.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	49.5	74.0	51.5	46.0	78.0	60.5
Merged-chr7-100474139-1	chr7	100473639	100474639	+	790.5	f0_balb.idr	intron (NM_009464, intron 1 of 6)	intron (NM_009464, intron 1 of 6)	1148.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5253801-2	chr17	5253301	5254301	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 5 of 19)	ID_B1|SINE|B4	164966.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74453427-2	chr11	74452927	74453927	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 3 of 24)	L1M4|LINE|L1	88756.0	NM_001011851	258153.0	Mm.376124	NM_001011851	ENSMUSG00000058275	Olfr412	MOR127-5P	olfactory receptor 412	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38298370-2	chr15	38297870	38298870	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013692, intron 1 of 3)	intron (NM_013692, intron 1 of 3)	1530.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102078590-2	chr5	102078090	102079090	+	790.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8669.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100057974-2	chr15	100057474	100058474	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	19310.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56731700-4	chr19	56731217	56732217	+	790.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9345.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27735284-2	chr2	27734784	27735784	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	24701.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-77286981-3	chr2	77286527	77287527	+	790.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6435.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9678796-2	chr13	9678296	9679296	+	790.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	85014.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-94582258-3	chr6	94581763	94582763	+	790.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026255, intron 6 of 9)	intron (NM_026255, intron 6 of 9)	24152.0	NR_106008	102466992.0		NR_106008	ENSMUSG00000098531	Mir7041	Gm27872|mmu-mir-7041	microRNA 7041	ncRNA	0.0	1.5	0.0	0.0	1.0	0.0
Merged-chr17-29012057-2	chr17	29011557	29012557	+	790.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4062.0	NM_001357173	106504.0	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-71216047-2	chr9	71215547	71216547	+	790.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110519)	promoter-TSS (NR_110519)	258.0	NM_009022	19378.0	Mm.42016	NM_009022	ENSMUSG00000013584	Aldh1a2	AV116159|Aldh1a7|Raldh1|Raldh2	aldehyde dehydrogenase family 1, subfamily A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-13577121-2	chr12	13576621	13577621	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027706, intron 51 of 51)	intron (NM_027706, intron 51 of 51)	50525.0	NR_136761	102639399.0	Mm.122052	NR_136761	ENSMUSG00000113666	Gm35725	-	predicted gene, 35725	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88395468-2	chr3	88394968	88395968	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310605, intron 2 of 2)	intron (NM_001310605, intron 2 of 2)	-11002.0	NM_007541	12096.0	Mm.389459	NM_007541	ENSMUSG00000074483	Bglap	BGP|Bglap1|OC|OG1|mOC-A	bone gamma carboxyglutamate protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-35107634-2	chr5	35107134	35108134	+	790.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1937.0	NM_013587	16976.0	Mm.277661	NM_013587	ENSMUSG00000029103	Lrpap1	AA617339|AI790446|AU042172|C77774|HBP44|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34075439-2	chr17	34074939	34075939	+	790.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16940.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	2.5	8.0	0.0	0.0	3.5	0.0
Merged-chr4-135152979-2	chr4	135152479	135153479	+	790.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_019732, exon 2 of 6)	exon (NM_019732, exon 2 of 6)	32334.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31881689-2	chr5	31881189	31882189	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 6 of 11)	intron (NM_144541, intron 6 of 11)	183639.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23834938-2	chr17	23834438	23835438	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081399, intron 3 of 5)	intron (NM_001081399, intron 3 of 5)	829.0	NM_001081399	353130.0	Mm.261689	NM_178370	ENSMUSG00000049620	Prss33	Eos|mT6|tryptase-6	protease, serine 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80135319-2	chr10	80134819	80135819	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_036582, intron 7 of 10)	intron (NR_036582, intron 7 of 10)	2068.0	NM_001195268	100503659.0	Mm.485395	NM_015761	ENSMUSG00000035640	Cbarp	9630008F14|Dos|R29144/1	calcium channel, voltage-dependent, beta subunit associated regulatory protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72173205-1	chr5	72172705	72173705	+	790.5	f0_balb.idr	Intergenic	Intergenic	-5016.0	NM_001356614	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73730536-2	chr15	73730036	73731036	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	5606.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17917543-2	chr16	17917043	17918043	+	790.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2484.0	NM_029469	195333.0	Mm.463003	NM_029469	ENSMUSG00000022738	Gsc2	4930568H22Rik|GSC-2|Gscl	goosecoid homebox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98678759-2	chr11	98678259	98679259	+	790.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-3795.0	NM_009439	22123.0	Mm.12194	NM_009439	ENSMUSG00000017221	Psmd3	AI255837|AntP91a|D11Bwg1349e|Psd3|Tstap91a	proteasome (prosome, macropain) 26S subunit, non-ATPase, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-125248269-2	chr2	125247769	125248769	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023595, intron 1 of 5)	intron (NM_023595, intron 1 of 5)	754.0	NM_023595	110074.0	Mm.282499	NM_023595	ENSMUSG00000027203	Dut	5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase	deoxyuridine triphosphatase	protein-coding	0.0	0.5	5.5	0.0	7.5	3.0
Merged-chr19-34512544-2	chr19	34512044	34513044	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	Lx5b|LINE|L1	14930.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-47068730-2	chr7	47068230	47069230	+	790.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14494.0	NR_106023	102465639.0		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29628879-2	chr2	29628379	29629379	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	9159.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91414117-2	chr16	91413617	91414617	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008349, intron 3 of 6)	L1MD|LINE|L1	7882.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29049253-4	chr17	29048758	29049758	+	790.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16598.0	NR_036613	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	5.0	0.0	0.0	12.0	0.0	0.5
Merged-chr9-21155511-2	chr9	21155011	21156011	+	790.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5605.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80841553-2	chr7	80841053	80842053	+	790.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20555.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27467038-3	chr15	27466530	27467530	+	790.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020332, exon 1 of 12)	exon (NM_020332, exon 1 of 12)	353.0	NM_020332	11732.0	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-51499017-3	chr1	51498519	51499519	+	790.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20620.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123083026-3	chr4	123082516	123083516	+	790.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22145.0	NM_007559	12164.0	Mm.439764	NM_007559	ENSMUSG00000002384	Bmp8b	Op3	bone morphogenetic protein 8b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97987272-2	chr11	97986772	97987772	+	790.400024	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028199)	promoter-TSS (NM_028199)	-826.0	NM_001163608	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29375874-3	chr11	29375354	29376354	+	790.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176841, intron 2 of 31)	MTD|LTR|ERVL-MaLR	1682.0	NM_176841	108686.0	Mm.338284	NM_176841	ENSMUSG00000032740	Ccdc88a	A430106J12Rik|AI848406|Ape|C130096N06Rik|C330012F17Rik|D130005J21Rik|Girdin|Giv|Grdn|Hkrp1	coiled coil domain containing 88A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34171328-2	chr10	34170828	34171828	+	790.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 2 of 5)	intron (NM_172508, intron 2 of 5)	36223.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77359676-3	chr15	77359168	77360168	+	790.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39442.0	NM_029419	75761.0	Mm.232636	NM_029419	ENSMUSG00000010601	Apol7a	9130022K13Rik|Apol3	apolipoprotein L 7a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27383633-3	chr14	27383128	27384128	+	790.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 4 of 10)	intron (NM_027871, intron 4 of 10)	22239.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	8.0	1.0	4.5	3.0	16.5	12.5
Merged-chr19-23015675-1	chr19	23015175	23016175	+	790.333313	f0_c57.idr	Intergenic	Intergenic	-125551.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	9.5	1.0	0.0	4.0	0.0	6.5
Merged-chr14-20370303-2	chr14	20369803	20370803	+	790.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024512, intron 7 of 13)	B1_Mus1|SINE|Alu	18607.0	NM_134081	108671.0	Mm.2871	NM_134081	ENSMUSG00000021811	Dnajc9	5330419I01Rik|AU020082	DnaJ heat shock protein family (Hsp40) member C9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71931238-3	chr6	71930731	71931731	+	790.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009088, intron 11 of 33)	intron (NM_009088, intron 11 of 33)	22178.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125331834-2	chr6	125331322	125332322	+	790.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_011324, intron 2 of 11)	intron (NM_011324, intron 2 of 11)	10482.0	NM_011324	20276.0	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	5.0	3.0	5.5	0.0	2.5	0.0
Merged-chr17-67261158-3	chr17	67260663	67261663	+	790.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	L1MA5|LINE|L1	93296.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	18.0	69.0	44.5	22.5	34.5	38.0
Merged-chr15-102109314-3	chr15	102108807	102109807	+	790.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355636, intron 11 of 28)	intron (NM_001355636, intron 11 of 28)	6373.0	NM_153533	209039.0	Mm.29389	NM_153533	ENSMUSG00000037003	Tns2	C1-ten|Tenc1|nep|nph	tensin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-75517867-3	chr3	75517374	75518374	+	790.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019745, intron 7 of 7)	intron (NM_019745, intron 7 of 7)	38978.0	NM_019745	56426.0	Mm.316473	NM_019745	ENSMUSG00000027835	Pdcd10	2410003B13Rik|Ccm3|Tfa15|Tfar15	programmed cell death 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142902743-5	chr5	142902110	142903110	+	790.320007	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007393)	TTS (NM_007393)	4144.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-151851380-4	chr4	151850906	151851906	+	790.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 1 of 23)	B4|SINE|B4	10362.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8913172-4	chr12	8912588	8913588	+	790.303589	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8219.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8347833-4	chr12	8347319	8348319	+	790.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34386.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	7.0	36.0	13.0	3.5	20.5	14.0
Merged-chr2-164760600-4	chr2	164760100	164761100	+	790.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133763, intron 8 of 12)	MTD|LTR|ERVL-MaLR	-9329.0	NM_026785	68612.0	Mm.89830	NM_026785	ENSMUSG00000001403	Ube2c	1110015A16Rik|D2Ertd695e	ubiquitin-conjugating enzyme E2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64793079-4	chr9	64792571	64793571	+	790.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17940.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116220639-3	chr11	116220131	116221131	+	790.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025276)	TTS (NM_025276)	4629.0	NR_004853	69681.0	Mm.33677	NR_004853	ENSMUSG00000092300	Cdk3-ps	2310050O10Rik|Cdk3	cyclin-dependent kinase 3, pseudogene	pseudo	8.0	0.0	1.0	3.0	2.5	1.0
Merged-chr2-167749216-2	chr2	167748716	167749716	+	790.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58039.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-43529265-5	chr11	43528713	43529713	+	790.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045530, intron 1 of 5)	CpG	464.0	NM_001045530	380694.0	Mm.247595	NM_001045530	ENSMUSG00000044707	Ccnjl	Gm877	cyclin J-like	protein-coding	2.0	0.0	0.0	0.0	1.0	9.5
Merged-chr7-98779134-4	chr7	98778649	98779649	+	790.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55963.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.0	0.0	0.0	0.0	2.0	0.5
Merged-chr15-99451923-2	chr15	99451423	99452423	+	790.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001884, intron 1 of 12)	intron (NM_001001884, intron 1 of 12)	5825.0	NM_001001884	380969.0	Mm.22915	NM_001001884	ENSMUSG00000023009	Nckap5l	C230021P08Rik|Cep169	NCK-associated protein 5-like	protein-coding	0.0	2.0	5.5	0.0	0.0	1.0
Merged-chr11-52284456-2	chr11	52283956	52284956	+	790.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1442.0	NM_001313981	21414.0	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100536890-4	chr5	100536395	100537395	+	790.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359204, intron 7 of 10)	Tigger17a|DNA|TcMar-Tigger	18586.0	NM_001359204	26891.0	Mm.957	NM_012001	ENSMUSG00000035297	Cops4	AW208976|D5Ertd774e|SGN4	COP9 signalosome subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7390929-4	chr10	7390525	7391525	+	790.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	82452.0	NM_029975	77777.0	Mm.442442	NM_029975	ENSMUSG00000079685	Ulbp1	A430108B07Rik|MULT1	UL16 binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61474484-4	chr10	61473987	61474987	+	790.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-1346.0	NM_153542	216011.0	Mm.136116	NM_153542	ENSMUSG00000037151	Lrrc20	BC036304	leucine rich repeat containing 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80006353-1	chr15	80005853	80006853	+	790.25	f0_balb.idr	intron (NM_011057, intron 1 of 6)	intron (NM_011057, intron 1 of 6)	-7327.0	NR_106072	102465699.0		NR_106072	ENSMUSG00000099222	Mir7213	Gm27377|mmu-mir-7213	microRNA 7213	ncRNA	15.5	6.5	12.0	15.0	8.5	25.5
Merged-chr8-11463078-2	chr8	11462578	11463578	+	790.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	B1_Mus1|SINE|Alu	-14851.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-42300570-3	chr13	42299966	42300966	+	790.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1010.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35896844-3	chr17	35896378	35897378	+	790.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001142744)	TTS (NM_001142744)	500.0	NM_001033630	69662.0	Mm.260159	NM_001033630	ENSMUSG00000050705	2310061I04Rik	-	RIKEN cDNA 2310061I04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145743474-3	chr2	145742964	145743964	+	790.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 3 of 3)	intron (NR_033220, intron 3 of 3)	42269.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-30787882-4	chr10	30787363	30788363	+	790.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 1 of 14)	intron (NM_001358842, intron 1 of 14)	15463.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-45452861-4	chr8	45452371	45453371	+	790.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-42252.0	NM_126166	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-36833501-5	chr19	36832969	36833969	+	790.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163635)	promoter-TSS (NM_001163635)	-763.0	NM_001163635	74493.0	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126175004-2	chr7	126174504	126175504	+	790.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 1 of 23)	intron (NM_028816, intron 1 of 23)	25497.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184846522-2	chr1	184846022	184847022	+	790.200012	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133684)	promoter-TSS (NM_133684)	-675.0	NM_133684	67247.0	Mm.177724	NM_133684	ENSMUSG00000073481	Marc2	2810484M10Rik|Mosc2|mARC1	mitochondrial amidoxime reducing component 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-84991526-3	chr16	84991062	84992062	+	790.1904910000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 12 of 15)	intron (NM_001198825, intron 12 of 15)	19351.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128895633-4	chr10	128895127	128896127	+	790.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3909.0	NM_010272	14561.0	Mm.299218	NM_010272	ENSMUSG00000025352	Gdf11	BMP-11|Bmp11	growth differentiation factor 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42483583-2	chr19	42483083	42484083	+	790.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35222.0	NM_177464	52013.0	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	1.5	0.0	0.0	4.0	0.0	1.0
Merged-chr16-43405302-4	chr16	43404807	43405807	+	790.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	MIR|SINE|MIR	14889.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	0.0	0.5	2.5	0.0	1.0	1.0
Merged-chr2-59889442-4	chr2	59888946	59889946	+	790.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-6840.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55700361-2	chr19	55699868	55700868	+	790.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 1 of 3)	intron (NR_045318, intron 1 of 3)	1836.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	91.0	170.0	146.0	81.0	193.5	188.5
Merged-chr11-74834770-5	chr11	74834235	74835235	+	790.150024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010813, intron 1 of 5)	intron (NM_010813, intron 1 of 5)	3811.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	29.5	26.5	39.5	23.5	11.0	48.5
Merged-chr6-37354909-3	chr6	37354329	37355329	+	790.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 6 of 11)	intron (NM_178661, intron 6 of 11)	-54853.0	NM_001347104	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64342645-3	chr15	64342148	64343148	+	790.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 2 of 28)	intron (NM_001276461, intron 2 of 28)	-29975.0	NM_001276463	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111738989-4	chr12	111738496	111739496	+	790.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163388, intron 4 of 5)	B3|SINE|B2	-19853.0	NM_001361612	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	0.0	0.0	2.0	0.0	0.0	2.0
Merged-chr11-76493942-3	chr11	76493425	76494425	+	790.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198018, intron 1 of 21)	intron (NM_198018, intron 1 of 21)	570.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.0	0.0	3.0	1.5	4.5	4.0
Merged-chr14-98605985-3	chr14	98605501	98606501	+	790.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-436236.0	NM_007826	13134.0	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund family transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32656966-3	chr9	32656450	32657450	+	790.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39092.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145239900-4	chr4	145239376	145240376	+	790.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	6994.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133200214-7	chr4	133199754	133200754	+	790.069031	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4599.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	0.0	0.5	2.5	0.0	1.5	0.0
Merged-chr8-30936292-4	chr8	30935818	30936818	+	790.0625	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-153209.0	NM_025869	66959.0	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding	4.5	44.0	37.0	1.5	13.5	10.0
Merged-chr7-19076731-4	chr7	19076229	19077229	+	790.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010058, intron 1 of 4)	intron (NM_010058, intron 1 of 4)	529.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	3.0	3.5	8.5	0.0	3.5	0.0
Merged-chr2-68983707-4	chr2	68983207	68984207	+	790.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 3 of 10)	ID_B1|SINE|B4	122266.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67226313-4	chr7	67225771	67226771	+	790.016663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175215, exon 3 of 3)	exon (NM_175215, exon 3 of 3)	3655.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91179261-4	chr1	91178811	91179811	+	790.016663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178401)	promoter-TSS (NM_178401)	-511.0	NM_016894	51801.0	Mm.3272	NM_016894	ENSMUSG00000034353	Ramp1	9130218E19Rik	receptor (calcitonin) activity modifying protein 1	protein-coding	0.0	4.5	0.0	0.0	0.0	3.0
Merged-chr13-58471892-2	chr13	58471392	58472392	+	790.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68549.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0.0	0.0	0.5	1.5	0.0	0.0
Merged-chr7-80089596-2	chr7	80089096	80090096	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146000, intron 5 of 5)	intron (NM_001146000, intron 5 of 5)	-14339.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr18-36343622-2	chr18	36343122	36344122	+	790.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5002.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48557996-4	chr17	48557496	48558496	+	790.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103095.0	NM_152823	76589.0	Mm.311629	NM_152823	ENSMUSG00000043592	Unc5cl	2510009H09Rik|BB155270|Zud	unc-5 family C-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107288121-2	chr3	107287621	107288621	+	790.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-3109.0	NM_001310705	229699.0	Mm.38384	NM_146136	ENSMUSG00000027896	Slc16a4	AW146050|MCT 5	solute carrier family 16 (monocarboxylic acid transporters), member 4	protein-coding	4.0	0.0	0.0	2.0	0.0	0.0
Merged-chr1-173732860-1	chr1	173732360	173733360	+	790.0	f0_balb.idr	intron (NM_001204910, intron 3 of 7)	Lx7|LINE|L1	8949.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	0.0	14.0	6.5	8.0	12.5	2.0
Merged-chr13-81335094-2	chr13	81334594	81335594	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 83 of 89)	intron (NM_054053, intron 83 of 89)	298050.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30591104-2	chr7	30590604	30591604	+	790.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_021397, exon 2 of 6)	exon (NM_021397, exon 2 of 6)	1724.0	NR_106134	102465774.0		NR_106134	ENSMUSG00000098553	Mir3569	Gm27279|mmu-mir-3569	microRNA 3569	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89250665-2	chr3	89250165	89251165	+	790.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025327)	TTS (NM_025327)	4192.0	NM_001310625	66059.0	Mm.177991	NM_025327	ENSMUSG00000042747	Krtcap2	0610010I12Rik|Kcp2	keratinocyte associated protein 2	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr10-119053300-2	chr10	119052800	119053800	+	790.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2801.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39777466-2	chr1	39776966	39777966	+	790.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	27866.0	NM_001177348	100042065.0	Mm.209678	NM_001177348	ENSMUSG00000091937	Gm3646	-	predicted gene 3646	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75176579-2	chr11	75176079	75177079	+	790.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027136, exon 2 of 2)	3' UTR (NM_027136, exon 2 of 2)	2229.0	NM_027136	246257.0	Mm.41496	NM_027136	ENSMUSG00000038268	Ovca2	9030414M07Rik	candidate tumor suppressor in ovarian cancer 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5840130-3	chr18	5839624	5840624	+	790.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	247477.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	8.5	6.5	3.5	0.0	4.5	1.5
Merged-chr2-129384755-2	chr2	129384233	129385233	+	790.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13594.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	52.0	54.5	48.0	60.5	93.5	82.5
Merged-chr7-27526259-2	chr7	27525759	27526759	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033315, intron 1 of 3)	intron (NM_001033315, intron 1 of 3)	2998.0	NM_001033315	233020.0	Mm.429716	NM_001033315	ENSMUSG00000040424	Hipk4	Gm162	homeodomain interacting protein kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101501368-1	chr7	101500868	101501868	+	790.0	f1_c57bl6.idr	intron (NM_001008548, intron 8 of 30)	intron (NM_001008548, intron 8 of 30)	25992.0	NR_029791	387157.0		NR_029791	ENSMUSG00000065446	Mir139	Mirn139|mir-139|mmu-mir-139	microRNA 139	ncRNA	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr3-131560173-1	chr3	131559673	131560673	+	790.0	f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-4595.0	NM_001289479	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153296499-2	chr2	153295999	153296999	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008444, intron 1 of 8)	intron (NM_008444, intron 1 of 8)	5083.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	4.5	0.0	3.0	0.0	1.5	1.0
Merged-chr17-50581390-3	chr17	50580927	50581927	+	790.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	URR1A|DNA|hAT-Charlie	71880.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	6.0	18.0	6.5	6.0	20.5	21.5
Merged-chr14-27183093-2	chr14	27182593	27183593	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	MLT1A0|LTR|ERVL-MaLR	39100.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19049580-2	chr7	19049080	19050080	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360713, intron 21 of 22)	intron (NM_001360713, intron 21 of 22)	-5107.0	NM_031255	83434.0	Mm.84435	NM_031255	ENSMUSG00000040866	Rsph6a	RSP4|Rshl1	radial spoke head 6 homolog A (Chlamydomonas)	protein-coding	0.0	0.0	0.0	1.5	0.0	0.0
Merged-chr7-78910799-2	chr7	78910299	78911299	+	790.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153795, exon 3 of 3)	non-coding (NR_153795, exon 3 of 3)	-2625.0	NM_001291221	57444.0	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118116250-2	chr11	118115750	118116750	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167746, intron 13 of 80)	ORR1G|LTR|ERVL-MaLR	12969.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45330641-1	chr13	45330141	45331141	+	790.0	f0_balb.idr	Intergenic	Intergenic	-59101.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	2.5	1.0	0.0	2.0	1.0	0.0
Merged-chr11-70788680-2	chr11	70788180	70789180	+	790.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23881.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151065637-2	chr1	151065137	151066137	+	790.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72202.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-12569629-1	chr16	12569129	12570129	+	790.0	f1_balb.idr	Intergenic	Intergenic	-241761.0	NR_040507	75493.0	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	3.5	6.0	9.5	0.0	1.0	4.0
Merged-chr9-104122244-2	chr9	104121781	104122781	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175324, intron 17 of 19)	RMER1B|Other|Other	4362.0	NM_145700	252837.0	Mm.269254	NM_145700	ENSMUSG00000079355	Ackr4	A630091E18Rik|CCBP2|CCR11|CCX-CKR|CCX-CKR1|Ccrl1|Cmkbrl1|PPR1|VSHK1	atypical chemokine receptor 4	protein-coding	0.0	0.0	0.0	0.0	1.5	0.0
Merged-chr9-37029982-1	chr9	37029482	37030482	+	790.0	f0_balb.idr	intron (NM_001029838, intron 2 of 12)	intron (NM_001029838, intron 2 of 12)	117340.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	0.0	4.5	0.0	0.0	3.5	0.0
Merged-chr5-115069232-1	chr5	115068732	115069732	+	790.0	f1_c57bl6.idr	intron (NM_029012, intron 2 of 10)	MLT1B|LTR|ERVL-MaLR	38730.0	NM_001271591	100502825.0	Mm.361657	NM_001271590		Rpl37rt	EyeLinc4|Gm13826	ribosomal protein L37, retrotransposed	protein-coding	0.0	9.0	2.0	0.0	9.0	2.0
Merged-chr2-11189341-2	chr2	11188841	11189841	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	B3A|SINE|B2	16959.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161489857-2	chr1	161489357	161490357	+	790.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4800.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	0.0	10.0	5.5	0.0	12.5	7.0
Merged-chr11-69763681-1	chr11	69763181	69764181	+	790.0	f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1837.0	NM_019871	56293.0	Mm.6211	NM_019871	ENSMUSG00000018776	Slc35g3	Amac1	solute carrier family 35, member G3	protein-coding	0.0	0.0	3.5	0.0	0.0	0.0
Merged-chr7-30551473-2	chr7	30550973	30551973	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183321, intron 1 of 11)	B1_Mm|SINE|Alu	799.0	NM_183321	333193.0	Mm.34885	NM_183321	ENSMUSG00000036864	Proser3	-	proline and serine rich 3	protein-coding	21.0	27.0	23.0	14.5	31.0	16.5
Merged-chr11-96849884-4	chr11	96849359	96850359	+	790.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019877)	promoter-TSS (NM_019877)	-17.0	NM_019877	56358.0	Mm.22144	NM_019877	ENSMUSG00000018672	Copz2	1110012D12Rik|zeta2-COP	coatomer protein complex, subunit zeta 2	protein-coding	0.0	2.5	0.0	0.5	0.0	2.5
Merged-chr11-53309052-1	chr11	53308552	53309552	+	790.0	f0_balb.idr	Intergenic	Intergenic	-8573.0	NM_008300	15525.0	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-96480561-2	chr7	96480061	96481061	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 3 of 32)	intron (NM_011858, intron 3 of 32)	-138597.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98922947-2	chr13	98922447	98923447	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 1 of 23)	ORR1A2-int|LTR|ERVL-MaLR	3437.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5593362-2	chr17	5592862	5593862	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	MTD|LTR|ERVL-MaLR	100762.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56624701-2	chr18	56624201	56625201	+	790.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36353.0	NM_026099	67343.0	Mm.87057	NM_026099	ENSMUSG00000032900	Tex43	1700065I17Rik|Tseg7	testis expressed 43	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-107049118-1	chr8	107048618	107049618	+	790.0	f1_balb.idr	promoter-TSS (NM_026513)	promoter-TSS (NM_026513)	-504.0	NM_026513	68023.0	Mm.482335	NM_026513	ENSMUSG00000078931	Pdf	2610019N19Rik	peptide deformylase (mitochondrial)	protein-coding	20.0	47.0	35.5	15.5	29.0	31.5
Merged-chr2-26516456-3	chr2	26515953	26516953	+	790.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12526.0	NR_132655	102639736.0		NR_132655		Gm35978	-	predicted gene, 35978	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143506082-4	chr7	143505579	143506579	+	790.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3555.0	NM_009434	22113.0	Mm.334344	NM_009434	ENSMUSG00000010760	Phlda2	Ipl|Tssc3	pleckstrin homology like domain, family A, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-16623931-3	chr11	16623480	16624480	+	790.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-115496.0	NM_001109971	20335.0	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	0.0	0.5	1.0	0.5	1.0	0.0
Merged-chr10-81336625-2	chr10	81336125	81337125	+	790.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6641.0	NM_148951	209047.0	Mm.218755	NM_148951	ENSMUSG00000034872	Gipc3	Ahl5|Rgs19ip3	GIPC PDZ domain containing family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81335583-2	chr10	81335083	81336083	+	790.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009325)	TTS (NM_009325)	6880.0	NM_001277265	21390.0	Mm.4545	NM_009325	ENSMUSG00000034881	Tbxa2r	TP|TXA2-R	thromboxane A2 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45235017-2	chr19	45234517	45235517	+	790.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010691, exon 1 of 2)	exon (NM_010691, exon 1 of 2)	219.0	NM_010691	16814.0	Mm.116815	NM_010691	ENSMUSG00000025216	Lbx1	Lbx1h	ladybird homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50499105-4	chr9	50498611	50499611	+	790.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029639, exon 2 of 4)	exon (NM_029639, exon 2 of 4)	4586.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32170402-2	chr19	32169902	32170902	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	40611.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116451090-2	chr11	116450590	116451590	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033267, intron 2 of 13)	L1M4|LINE|L1	3257.0	NM_001033267	217341.0	Mm.387352	NM_001033267	ENSMUSG00000070331	Qrich2	Gm66	glutamine rich 2	protein-coding	11.5	2.5	3.0	0.0	3.0	0.0
Merged-chr16-57551753-2	chr16	57551253	57552253	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	2511.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	4.5	16.5	12.0	20.5	33.5	9.5
Merged-chr9-118613344-2	chr9	118612844	118613844	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	6635.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104336985-2	chr8	104336485	104337485	+	790.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-3609.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-33863401-3	chr1	33862897	33863897	+	790.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 5 of 6)	intron (NM_177235, intron 5 of 6)	-24483.0	NM_001161816	433287.0	Mm.383632	NM_001161816		Gm15455	AA692849	predicted gene 15455	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74514506-2	chr15	74514006	74515006	+	790.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1690.0	NM_174991	107831.0	Mm.43133	NM_174991	ENSMUSG00000034730	Adgrb1	B830018M07Rik|Bai1|R75078|mKIAA4089	adhesion G protein-coupled receptor B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132599899-2	chr2	132599399	132600399	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033469, intron 1 of 3)	B3|SINE|B2	1703.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27882115-2	chr15	27881615	27882615	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 9 of 56)	intron (NM_001081302, intron 9 of 56)	143733.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19348435-2	chr7	19347931	19348931	+	790.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007948, exon 3 of 10)	exon (NM_007948, exon 3 of 10)	3360.0	NM_007948	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	2.0	5.5	0.0	12.5	4.0	0.0
Merged-chr5-23616144-3	chr5	23615639	23616639	+	790.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152854, intron 2 of 14)	intron (NR_152854, intron 2 of 14)	432.0	NM_001359175	20817.0	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	2.0	5.0	4.5	3.0	6.5	6.5
Merged-chr10-12921250-1	chr10	12920750	12921750	+	790.0	f1_c57bl6.idr	intron (NR_038028, intron 2 of 2)	intron (NR_038028, intron 2 of 2)	1877.0	NR_038027	320273.0	Mm.417706	NR_038027	ENSMUSG00000097378	B230208H11Rik	-	RIKEN cDNA B230208H11 gene	ncRNA	1.5	8.0	5.0	1.5	15.0	11.0
Merged-chr1-37906095-2	chr1	37905595	37906595	+	790.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033427, exon 6 of 6)	3' UTR (NM_001033427, exon 6 of 6)	10398.0	NM_001033427	332427.0	Mm.332981	NM_001033427	ENSMUSG00000061584	Lyg2	Gm776	lysozyme G-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-30723191-4	chr10	30722698	30723698	+	789.983337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 2 of 14)	ID4|SINE|ID	-67331.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84700229-3	chr8	84699909	84700909	+	789.972229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164560)	TTS (NM_001164560)	-1048.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0.0	4.5	4.0	2.0	13.5	7.0
Merged-chr19-59344468-4	chr19	59343977	59344977	+	789.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033222, intron 1 of 4)	intron (NM_001033222, intron 1 of 4)	1303.0	NM_001033222	107368.0	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107678386-4	chr9	107677985	107678985	+	789.958313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008140, intron 1 of 8)	intron (NM_008140, intron 1 of 8)	1107.0	NM_008140	14685.0	Mm.284853	NM_008140	ENSMUSG00000034837	Gnat1	Gnat-1|Ird1|Ird2|Tralpha|irdc|irdr|transducin	guanine nucleotide binding protein, alpha transducing 1	protein-coding	2.5	0.0	2.5	0.0	4.0	0.0
Merged-chr7-114922389-3	chr7	114921907	114922907	+	789.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26243.0	NR_040317	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6924699-4	chr19	6924209	6925209	+	789.924988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008431)	TTS (NM_008431)	671.0	NM_001039494	67077.0	Mm.251306	NM_001039494	ENSMUSG00000050623	Catsperz	1700019N12Rik|A430107B04Rik|MLZ-622|Tex40	cation channel sperm associated auxiliary subunit zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167053003-2	chr2	167052503	167053503	+	789.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033196, intron 3 of 13)	L1Md_F2|LINE|L1	-9508.0	NM_001291162	98999.0	Mm.297074	NM_001033196	ENSMUSG00000039501	Znfx1	AI481105|Astx3	zinc finger, NFX1-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118150277-2	chr11	118149777	118150777	+	789.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21058.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-82372991-3	chr8	82372512	82373512	+	789.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008357, intron 2 of 7)	intron (NM_008357, intron 2 of 7)	29574.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	31.5	37.5	60.0	15.5	64.0	56.0
Merged-chr1-87028962-3	chr1	87028429	87029429	+	789.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172157, intron 15 of 21)	intron (NM_001172157, intron 15 of 21)	60999.0	NM_007433	11650.0	Mm.195224	NM_007433	ENSMUSG00000026246	Alppl2	Akp5|C77216|D1Ertd816e|EAP	alkaline phosphatase, placental-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163532178-3	chr2	163531669	163532669	+	789.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312906, intron 1 of 10)	intron (NM_001312906, intron 1 of 10)	9552.0	NR_027970	68314.0	Mm.46190	NM_197983	ENSMUSG00000046840	Hnf4aos	0610008F07Rik	hepatic nuclear factor 4 alpha, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118950291-3	chr14	118949779	118950779	+	789.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008929, intron 1 of 11)	intron (NM_008929, intron 1 of 11)	12347.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-63650302-4	chr15	63649801	63650801	+	789.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	158438.0	NM_031378	83492.0	Mm.335619	NM_031378	ENSMUSG00000079025	Gsdmc	Gsdmc1|Mlze	gasdermin C	protein-coding	3.0	4.0	1.0	7.5	1.0	2.0
Merged-chr13-95563795-4	chr13	95563254	95564254	+	789.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38514.0	NM_007974	14063.0	Mm.1614	NM_007974	ENSMUSG00000021678	F2rl1	Gpcr11|PAR-2|Par2	coagulation factor II (thrombin) receptor-like 1	protein-coding	3.5	7.5	6.5	2.0	3.0	4.0
Merged-chr4-88332167-2	chr4	88331629	88332629	+	789.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081184, intron 23 of 43)	B3|SINE|B2	106797.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	0.0	3.5	0.5	2.0	2.0	0.0
Merged-chr3-64235694-2	chr3	64235194	64236194	+	789.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	51723.0	NM_001104614	637004.0	Mm.469887	NM_001104614	ENSMUSG00000091572	Vmn2r3	EG637004	vomeronasal 2, receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25320029-4	chr12	25319543	25320543	+	789.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	190869.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	16.5	23.0	22.0	13.0	33.0	14.5
Merged-chr10-111421359-2	chr10	111420859	111421859	+	789.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-51868.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32349142-4	chr17	32348642	32349642	+	789.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017476, intron 1 of 13)	MER20|DNA|hAT-Charlie	1435.0	NM_017476	54194.0	Mm.281005	NM_017476	ENSMUSG00000002625	Akap8l	HAP95|Nakap95	A kinase (PRKA) anchor protein 8-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88238853-5	chr1	88238344	88239344	+	789.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 14 of 41)	intron (NM_001281466, intron 14 of 41)	11824.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86547468-3	chr6	86546949	86547949	+	789.799988	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037961, intron 3 of 4)	intron (NR_037961, intron 3 of 4)	20048.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44702910-2	chr10	44702410	44703410	+	789.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-244162.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98869733-5	chr15	98869309	98870309	+	789.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033276, intron 1 of 54)	intron (NM_001033276, intron 1 of 54)	1396.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132226881-4	chr7	132226397	132227397	+	789.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72156.0	NM_018867	55987.0	Mm.471654	NM_018867	ENSMUSG00000030862	Cpxm2	4632435C11Rik|CPX-2|Cpx2	carboxypeptidase X 2 (M14 family)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99235656-3	chr5	99235172	99236172	+	789.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145839, intron 4 of 13)	intron (NM_145839, intron 4 of 13)	17255.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	1.5	5.5	5.5	11.0	2.0
Merged-chr10-13028412-3	chr10	13027921	13028921	+	789.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19971.0	NM_175102	66125.0	Mm.29743	NM_175102	ENSMUSG00000078348	Sf3b5	10kDa|1110005L13Rik|AU043053|Sf3b10	splicing factor 3b, subunit 5	protein-coding	0.0	3.0	10.0	0.0	3.0	10.0
Merged-chr5-142478970-3	chr5	142478470	142479470	+	789.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172725)	TTS (NM_172725)	15039.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54838747-3	chr13	54838269	54839269	+	789.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49364.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	0.0	4.0	0.0	0.0	0.0	1.5
Merged-chr14-19707513-3	chr14	19707000	19708000	+	789.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43757.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122343893-3	chr6	122343409	122344409	+	789.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3682.0	NM_001271579	13619.0	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113120104-2	chr12	113119604	113120604	+	789.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_054081, intron 3 of 19)	intron (NM_054081, intron 3 of 19)	-20132.0	NM_024223	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33925478-2	chr2	33924978	33925978	+	789.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37532.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141260910-2	chr7	141260410	141261410	+	789.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081118, intron 14 of 17)	intron (NM_001081118, intron 14 of 17)	5514.0	NM_001252601	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54645285-4	chr11	54644807	54645807	+	789.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 16 of 28)	ORR1D2|LTR|ERVL-MaLR	49161.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-115001310-2	chr7	115000809	115001809	+	789.75	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	50035.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	7.5	6.0	3.5	9.0	3.0	6.0
Merged-chr15-98978025-3	chr15	98977536	98978536	+	789.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7929.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9924763-4	chr19	9924251	9925251	+	789.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25218.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	1.0	17.5	17.0	3.5	6.5	12.0
Merged-chr7-98314160-3	chr7	98313662	98314662	+	789.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360615, intron 1 of 10)	intron (NM_001360615, intron 1 of 10)	-4620.0	NM_025408	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-90607486-3	chr6	90607030	90608030	+	789.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027868, intron 1 of 10)	intron (NM_027868, intron 1 of 10)	2650.0	NM_027868	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-16217016-2	chr18	16216516	16217516	+	789.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-498970.0	NM_199055	71367.0	Mm.329304	NM_199055	ENSMUSG00000047161	Chst9	5430438D01Rik	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38603621-3	chr16	38603099	38604099	+	789.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020260, exon 12 of 12)	exon (NM_020260, exon 12 of 12)	40785.0	NM_026407	67846.0	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29433615-3	chr6	29433156	29434156	+	789.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001311074, exon 1 of 47)	exon (NM_001311074, exon 1 of 47)	400.0	NM_001311074	68794.0	Mm.39046	NM_026839	ENSMUSG00000068699	Flnc	1110055E19Rik|ABP-280|ABPL|Fln2	filamin C, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49102390-3	chr13	49101901	49102901	+	789.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290313, intron 3 of 29)	RMER16_Mm|LTR|ERVK	45927.0	NM_029361	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-148682122-3	chr6	148681620	148682620	+	789.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4120.0	NR_131024	75831.0	Mm.159595	NR_131024	ENSMUSG00000084909	4930528G23Rik	-	RIKEN cDNA 4930528G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123254792-3	chr8	123254291	123255291	+	789.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310661)	promoter-TSS (NM_001310661)	-569.0	NM_028200	72325.0	Mm.276193	NM_028200	ENSMUSG00000001062	Vps9d1	1300018I17Rik|2410004N05Rik|5DOS1|Vsp9d1	VPS9 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74283188-2	chr1	74282688	74283688	+	789.666687	f1_balb.idr|f1_c57bl6.idr	exon (NM_001190444, exon 3 of 11)	exon (NM_001190444, exon 3 of 11)	1550.0	NM_001190444	227290.0	Mm.379371	NM_146110	ENSMUSG00000006299	Aamp	AU040907|Aamp-rs	angio-associated migratory protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-153959663-3	chr3	153959183	153960183	+	789.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13753.0	NM_001081263	242259.0	Mm.239962	NM_001081263	ENSMUSG00000028360	Slc44a5	AA117069|Gm422	solute carrier family 44, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-68163057-3	chr18	68162533	68163533	+	789.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-64913.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	3.0	0.0	3.5	0.5	5.0	0.0
Merged-chr14-74948629-2	chr14	74948129	74949129	+	789.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252132)	promoter-TSS (NM_001252132)	-752.0	NM_001033439	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80760667-4	chr12	80760158	80761158	+	789.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008423)	promoter-TSS (NM_001008423)	57.0	NM_001008423	380768.0	Mm.29367	NM_001008423	ENSMUSG00000062961	Ccdc177	Gm1568	coiled-coil domain containing 177	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110479357-3	chr5	110478859	110479859	+	789.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30856.0	NM_001142642	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	0.0	5.0	0.0	3.0	1.5	1.0
Merged-chr10-82083391-5	chr10	82082918	82083918	+	789.609558	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	35291.0	NM_001024626	408062.0	Mm.391409	NM_001024626	ENSMUSG00000061371	Zfp873	-	zinc finger protein 873	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79936331-1	chr3	79935831	79936831	+	789.599976	f0_balb.idr	intron (NM_133187, intron 2 of 3)	intron (NM_133187, intron 2 of 3)	50401.0	NM_133187	68659.0	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47755209-2	chr17	47754709	47755709	+	789.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	17278.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38669732-2	chr6	38669232	38670232	+	789.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101507, intron 1 of 4)	B3A|SINE|B2	6663.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107105741-2	chr13	107105235	107106235	+	789.56665	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	83165.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93680849-3	chr10	93680336	93681336	+	789.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038017, intron 1 of 5)	intron (NR_038017, intron 1 of 5)	2486.0	NR_038017	100504069.0	Mm.391412	NR_038017	ENSMUSG00000085723	Gm15915	-	predicted gene 15915	ncRNA	6.0	8.5	1.5	5.5	4.5	0.0
Merged-chr13-49097743-3	chr13	49097227	49098227	+	789.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290313, intron 4 of 29)	intron (NM_001290313, intron 4 of 29)	50601.0	NM_029361	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146947777-3	chr5	146947395	146948395	+	789.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025652)	promoter-TSS (NM_025652)	-762.0	NM_025652	66596.0	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	65.5	114.5	101.0	8.0	41.5	18.0
Merged-chr14-118922914-3	chr14	118922449	118923449	+	789.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360413)	promoter-TSS (NM_001360413)	-158.0	NM_001360413	66573.0	Mm.87456	NM_025943	ENSMUSG00000042156	Dzip1	2510025K24Rik|2810422M04Rik	DAZ interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49252622-3	chr7	49252131	49253131	+	789.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 1 of 37)	intron (NM_175272, intron 1 of 37)	6442.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77494079-6	chr11	77493545	77494545	+	789.532837	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004144, intron 1 of 19)	intron (NM_001004144, intron 1 of 19)	633.0	NM_001004144	216963.0	Mm.290182	NM_001004144	ENSMUSG00000011877	Git1	Cat-1|p95Cat	G protein-coupled receptor kinase-interactor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108733815-3	chr6	108733337	108734337	+	789.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49222.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121536300-4	chr9	121535807	121536807	+	789.516663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2-int|LTR|ERVL-MaLR	-40613.0	NM_031161	12424.0	Mm.2619	NM_031161	ENSMUSG00000032532	Cck	-	cholecystokinin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84619675-2	chr3	84619175	84620175	+	789.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	26101.0	NM_207278	403175.0	Mm.83086	NM_207278	ENSMUSG00000047819	Tigd4	C130063O11Rik|Gm418	tigger transposable element derived 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95856971-2	chr9	95856471	95857471	+	789.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019864)	promoter-TSS (NM_019864)	546.0	NR_073361	73410.0	Mm.443314	NM_028533	ENSMUSG00000096655	1700065D16Rik	-	RIKEN cDNA 1700065D16 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78158147-2	chr10	78157647	78158647	+	789.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC|LINE|L1	11621.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32725600-1	chr5	32725100	32726100	+	789.5	f1_balb.idr	Intergenic	RMER4A|LTR|ERVK	20742.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0.0	0.0	3.5	0.0	2.0	2.0
Merged-chr2-75686116-2	chr2	75685632	75686632	+	789.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010902, intron 1 of 4)	intron (NM_010902, intron 1 of 4)	18531.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	14.5	73.0	45.5	13.0	47.5	36.5
Merged-chr9-95189024-2	chr9	95188524	95189524	+	789.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 14 of 15)	MIRb|SINE|MIR	218246.0	NM_018763	54371.0	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	4.0	0.0	6.5	0.0	2.5	1.5
Merged-chr1-94325703-2	chr1	94325203	94326203	+	789.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-273150.0	NM_008798	18566.0	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121954113-2	chr8	121953627	121954627	+	789.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016812, intron 1 of 13)	intron (NM_016812, intron 1 of 13)	3635.0	NM_001285983	53325.0	Mm.287163	NM_016812	ENSMUSG00000025316	Banp	AA408158|SMAR1	BTG3 associated nuclear protein	protein-coding	0.5	0.0	0.0	2.0	0.0	1.0
Merged-chr8-119435690-2	chr8	119435190	119436190	+	789.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1472.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49741694-3	chr7	49741214	49742214	+	789.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17392.0	NM_001146053	53415.0	Mm.20801	NM_016865	ENSMUSG00000039745	Htatip2	AW111545|Cc3|Tip30	HIV-1 Tat interactive protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99524099-2	chr12	99523599	99524599	+	789.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39742.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141012321-2	chr4	141011821	141012821	+	789.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008546, intron 1 of 8)	intron (NM_008546, intron 1 of 8)	1684.0	NM_008546	17150.0	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6066501-2	chr19	6066001	6067001	+	789.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_028454, exon 4 of 10)	exon (NM_028454, exon 4 of 10)	1349.0	NM_028454	73166.0	Mm.489613	NM_028454	ENSMUSG00000024799	Tm7sf2	3110041O18Rik|ANG1|C14SR|Dhcr14	transmembrane 7 superfamily member 2	protein-coding	0.0	0.0	0.0	0.0	3.0	0.0
Merged-chr2-156442054-2	chr2	156441502	156442502	+	789.5	f0_c57.idr|f1_c57bl6.idr	intron (NM_001291120, intron 2 of 22)	MIR|SINE|MIR	21093.0	NM_001291123	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	8.0	14.5	12.5	0.0	5.5	0.5
Merged-chr17-56670016-2	chr17	56669516	56670516	+	789.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3209.0	NM_001252466	71810.0	Mm.29608	NM_027933	ENSMUSG00000002372	Ranbp3	2610024N24Rik|AA408221	RAN binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-15076866-2	chr8	15076366	15077366	+	789.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008664, intron 6 of 36)	intron (NM_008664, intron 6 of 36)	19213.0	NM_008664	17930.0	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145285410-2	chr7	145284910	145285910	+	789.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1399.0	NR_132642	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	17.0	76.0	53.0	31.0	52.0	84.0
Merged-chr6-100835824-2	chr6	100835324	100836324	+	789.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_182939, intron 2 of 8)	intron (NM_182939, intron 2 of 8)	2186.0	NM_182939	232314.0	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding	0.0	0.0	0.0	1.0	1.5	2.0
Merged-chr12-91584879-2	chr12	91584379	91585379	+	789.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175335, intron 2 of 8)	intron (NM_175335, intron 2 of 8)	4770.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117977264-2	chr5	117976764	117977764	+	789.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346588, intron 1 of 11)	CpG	494.0	NM_001346588	231670.0	Mm.21912	NM_145564	ENSMUSG00000032898	Fbxo21	2810425J22Rik|AU016673	F-box protein 21	protein-coding	1.0	3.5	6.0	2.0	1.5	3.0
Merged-chr13-18794084-2	chr13	18793584	18794584	+	789.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 6 of 28)	intron (NM_172120, intron 6 of 28)	76792.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	0.5	0.0	0.0	0.0	0.0	2.0
Merged-chr7-46569674-2	chr7	46569174	46570174	+	789.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013789, intron 9 of 10)	B3|SINE|B2	70133.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25293994-2	chr2	25293494	25294494	+	789.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001242940, intron 2 of 3)	intron (NM_001242940, intron 2 of 3)	2774.0	NM_001242940	320354.0	Mm.445875	NM_001242940		Grin1os	E130003G02Rik	glutamate receptor, ionotropic, NMDA1 (zeta 1), opposite strand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64311106-2	chr5	64310606	64311606	+	789.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001310611, exon 15 of 22)	exon (NM_001310611, exon 15 of 22)	80749.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	6.0	9.5	3.0	0.0	3.5	2.0
Merged-chr17-24713079-2	chr17	24712611	24713611	+	789.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	4946.0	NM_026205	67504.0	Mm.46159	NM_026205	ENSMUSG00000008482	Rnf151	1700010O16Rik|AV047371	ring finger protein 151	protein-coding	5.5	2.0	0.0	2.0	3.5	0.5
Merged-chr14-69251684-3	chr14	69251238	69252238	+	789.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026331, intron 1 of 3)	B1F1|SINE|Alu	33365.0	NM_026331	67712.0	Mm.293635	NM_026331	ENSMUSG00000034248	Slc25a37	1700020E22Rik|4930513O14Rik|4930526G11Rik|AI848481|C330015G08Rik|Mfrn|Mfrn1|Mscp|frascati|mitoferrin	solute carrier family 25, member 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117834530-2	chr11	117834030	117835030	+	789.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027827, intron 4 of 10)	ID_B1|SINE|B4	-8516.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29491927-2	chr19	29491427	29492427	+	789.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30060.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86806485-2	chr11	86805985	86806985	+	789.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026191, exon 2 of 18)	exon (NM_026191, exon 2 of 18)	1175.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-14100760-2	chr1	14100260	14101260	+	789.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	209439.0	NM_001310459	14048.0	Mm.250185	NM_010164	ENSMUSG00000025932	Eya1	bor	EYA transcriptional coactivator and phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79860607-2	chr10	79860107	79861107	+	789.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001170935, exon 9 of 9)	3' UTR (NM_001170935, exon 9 of 9)	-1980.0	NR_105875	102465549.0		NR_105875	ENSMUSG00000098562	Mir6910	Gm27763|mmu-mir-6910	microRNA 6910	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-63950985-2	chr10	63950485	63951485	+	789.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178678, intron 2 of 2)	intron (NM_178678, intron 2 of 2)	129930.0	NM_001164519	216033.0	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-127078052-2	chr4	127077552	127078552	+	789.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_104366, exon 1 of 16)	non-coding (NR_104366, exon 1 of 16)	669.0	NM_001285887	100177.0	Mm.276096	NM_177462	ENSMUSG00000042408	Zmym6	9330177P20Rik|AI593204|AI661340|D4Wsu24e|Zfp258	zinc finger, MYM-type 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4258252-2	chr19	4257752	4258752	+	789.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5626.0	NR_105951	102465595.0		NR_105951	ENSMUSG00000099290	Mir6985	Gm27719|mmu-mir-6985	microRNA 6985	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-33624119-2	chr10	33623619	33624619	+	789.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152723)	promoter-TSS (NR_152723)	-127.0	NR_152723	102632938.0	Mm.417656	NR_152723	ENSMUSG00000090087	Gm15939	-	predicted gene 15939	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72858756-2	chr5	72858256	72859256	+	789.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 1 of 17)	MIRb|SINE|MIR	9692.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-189883210-2	chr1	189882710	189883710	+	789.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026796, intron 10 of 11)	intron (NM_026796, intron 10 of 11)	39081.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4738951-2	chr7	4738444	4739444	+	789.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-1183.0	NM_146177	232811.0	Mm.247844	NM_146177	ENSMUSG00000059851	Kmt5c	BC024816|Suv4-20h2|Suv420h2	lysine methyltransferase 5C	protein-coding	12.0	27.5	8.5	8.0	9.5	16.5
Merged-chr7-98543032-3	chr7	98542538	98543538	+	789.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	48816.0	NM_001113379	434215.0	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133467451-2	chr4	133466876	133467876	+	789.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-12757.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	2.0	3.0	7.5	27.0	50.0	41.5
Merged-chr8-13669731-3	chr8	13669242	13670242	+	789.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	7845.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105158316-4	chr4	105157826	105158826	+	789.462524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 1 of 5)	CpG	979.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	2.5	4.0	2.0	2.5	3.5	2.0
Merged-chr4-59471559-3	chr4	59471066	59472066	+	789.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178164)	TTS (NM_178164)	-32933.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67217314-3	chr7	67216815	67217815	+	789.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131044, intron 2 of 2)	intron (NR_131044, intron 2 of 2)	5143.0	NR_131044	76628.0	Mm.384589	NR_131043	ENSMUSG00000097527	1700112J16Rik	-	RIKEN cDNA 1700112J16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74674584-3	chr15	74674102	74675102	+	789.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2032.0	NM_018790	11838.0	Mm.491310	NM_018790	ENSMUSG00000022602	Arc	Arc3.1|C86064|arg3.1|mArc	activity regulated cytoskeletal-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108709677-4	chr6	108709145	108710145	+	789.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48711.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0.0	3.5	0.0	0.0	1.5	0.0
Merged-chr8-126831469-2	chr8	126830969	126831969	+	789.428589	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17551.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181929071-2	chr2	181928571	181929571	+	789.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62155.0	NM_001205282	672125.0	Mm.489571	NM_001205282	ENSMUSG00000098505	Gm14496	-	predicted gene 14496	protein-coding	0.0	0.5	0.0	0.0	0.5	0.0
Merged-chr8-105573578-2	chr8	105573078	105574078	+	789.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271806, intron 1 of 4)	(TC)n|Simple_repeat|Simple_repeat	-5277.0	NM_007427	11604.0	Mm.441696	NM_007427	ENSMUSG00000005705	Agrp	Agrt|Art	agouti related neuropeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154902296-3	chr2	154901802	154902802	+	789.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9396.0	NM_026030	67204.0	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	3.0	12.0	9.0	21.0	7.5	18.5
Merged-chr7-31000748-4	chr7	31000214	31001214	+	789.387512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18793.0	NM_001242647	76415.0	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-21640174-3	chr18	21639796	21640796	+	789.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081403, intron 1 of 7)	L1MB8|LINE|L1	-11269.0	NM_001271580	74644.0	Mm.329311	NM_001271580		4930426D05Rik	-	RIKEN cDNA 4930426D05 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111427070-2	chr12	111426570	111427570	+	789.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289487, intron 9 of 13)	B2_Mm1t|SINE|B2	9625.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126819480-2	chr8	126818980	126819980	+	789.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29540.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22140944-2	chr8	22140411	22141411	+	789.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011848, intron 11 of 15)	RLTR44A|LTR|ERVK	-15844.0	NM_001347318	330721.0	Mm.113940	NM_177898	ENSMUSG00000037738	Nek5	6530411J22|BB049667	NIMA (never in mitosis gene a)-related expressed kinase 5	protein-coding	0.0	0.0	0.0	1.0	3.0	0.0
Merged-chr13-94063063-3	chr13	94062633	94063633	+	789.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 1 of 3)	intron (NM_172589, intron 1 of 3)	5337.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91088033-4	chr2	91087533	91088533	+	789.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8645.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	9.0	59.0	33.0	3.5	34.0	40.5
Merged-chr17-24015818-5	chr17	24015213	24016213	+	789.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17613.0	NM_133731	70835.0	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	0.0	17.0	12.0	3.5	2.0	0.0
Merged-chr10-11350354-3	chr10	11349866	11350866	+	789.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010146, intron 1 of 3)	intron (NM_010146, intron 1 of 3)	6921.0	NM_010146	13853.0	Mm.89946	NM_010146	ENSMUSG00000055493	Epm2a	TG-B|Tg(TcraK,TcrbK)TG-BFlv	epilepsy, progressive myoclonic epilepsy, type 2 gene alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34156532-5	chr8	34156044	34157044	+	789.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026432, intron 1 of 5)	intron (NM_026432, intron 1 of 5)	1981.0	NM_026432	67887.0	Mm.290353	NM_026432	ENSMUSG00000031532	Saraf	1810045K07Rik|Tmem66	store-operated calcium entry-associated regulatory factor	protein-coding	27.0	40.0	13.0	20.0	48.0	35.0
Merged-chr14-57372574-4	chr14	57372069	57373069	+	789.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030004, intron 2 of 7)	intron (NM_030004, intron 2 of 7)	25914.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-10258553-3	chr3	10258059	10259059	+	789.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357159, intron 1 of 4)	intron (NM_001357159, intron 1 of 4)	-4307.0	NM_001357160	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102873581-3	chr2	102873086	102874086	+	789.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	28079.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	3.5	15.0	4.0	4.5	19.5	5.5
Merged-chr4-33338191-3	chr4	33337695	33338695	+	789.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305273, intron 7 of 15)	intron (NM_001305273, intron 7 of 15)	27884.0	NM_001305273	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78483588-2	chr9	78483088	78484088	+	789.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1864.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66834137-2	chr9	66833637	66834637	+	789.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_026674, intron 1 of 5)	intron (NM_026674, intron 1 of 5)	569.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52606202-4	chr2	52605679	52606679	+	789.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	L2a|LINE|L2	-47568.0	NM_001285427	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-133128160-2	chr1	133127660	133128660	+	789.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3006.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	4.0	6.5	5.5	4.0	6.5	5.5
Merged-chr12-26454842-4	chr12	26454320	26455320	+	789.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021384, intron 1 of 5)	intron (NM_021384, intron 1 of 5)	1632.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.0	13.5	0.0	6.5	13.0	3.0
Merged-chr11-67085655-4	chr11	67085150	67086150	+	789.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099635, intron 10 of 40)	intron (NM_001099635, intron 10 of 40)	7350.0	NM_001099635	17883.0	Mm.340090	NM_001099635	ENSMUSG00000020908	Myh3	MyHC-emb|Myhs-e|Myhse	myosin, heavy polypeptide 3, skeletal muscle, embryonic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61581495-2	chr8	61581002	61582002	+	789.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	9667.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	4.5	33.0	19.0	1.0	8.5	10.0
Merged-chr5-101846255-2	chr5	101845755	101846755	+	789.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 63 of 66)	intron (NM_172882, intron 63 of 66)	81125.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr5-115302614-2	chr5	115302114	115303114	+	789.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_131932, intron 1 of 1)	B3|SINE|B2	1494.0	NR_131932	102639268.0	Mm.319998	NR_131932		Gm13830	-	predicted gene 13830	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141140533-2	chr4	141140100	141141100	+	789.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025608)	promoter-TSS (NM_001025608)	-804.0	NR_102343	213491.0	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29704765-2	chr11	29704265	29705265	+	789.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_194051, intron 1 of 8)	MLT1A|LTR|ERVL-MaLR	10991.0	NM_194051	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	26.0	57.5	32.0	35.5	39.5	24.5
Merged-chr12-85462145-2	chr12	85461645	85462645	+	789.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11745.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-125782112-2	chr2	125781613	125782613	+	789.233337	f1_balb.idr|f1_c57bl6.idr	intron (NM_177608, intron 1 of 17)	intron (NM_177608, intron 1 of 17)	757.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	39.5	26.5	28.0	9.5	33.0	22.0
Merged-chr10-81178925-3	chr10	81178330	81179330	+	789.232117	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028549)	promoter-TSS (NR_028549)	-131.0	NR_028549	100217454.0		NR_028549	ENSMUSG00000064441	Snord37	MBII-376	small nucleolar RNA, C/D box 37	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94861493-3	chr8	94860991	94861991	+	789.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009090, intron 4 of 8)	intron (NM_009090, intron 4 of 8)	4041.0	NM_009090	20021.0	Mm.292492	NM_009090	ENSMUSG00000031783	Polr2c	33kDa|RPB3|Rpo2-3|mRBP31	polymerase (RNA) II (DNA directed) polypeptide C	protein-coding	2.0	1.0	4.0	0.0	0.0	0.0
Merged-chr9-41950884-3	chr9	41950379	41951379	+	789.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	126334.0	NM_001357261	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	3.5	0.0	4.0	0.0	0.0	4.5
Merged-chr15-41790825-3	chr15	41790340	41791340	+	789.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130163, intron 1 of 13)	MIR3|SINE|MIR	1325.0	NM_130885	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58861388-3	chr15	58860888	58861888	+	789.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16C|LTR|ERVK	-11261.0	NM_026642	68260.0	Mm.278805	NM_026642	ENSMUSG00000037085	Trmt12	4632406N01Rik|AI449275|Tyw2	tRNA methyltranferase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19019133-2	chr10	19018633	19019633	+	789.214233	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3723.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113045692-4	chr6	113045190	113046190	+	789.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355266)	promoter-TSS (NM_001355266)	-612.0	NM_001355266	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34817870-3	chr8	34817383	34818383	+	789.166687	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_176933, intron 3 of 3)	intron (NM_176933, intron 3 of 3)	10273.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	1.0	0.5	0.5	2.0	1.0	0.0
Merged-chr7-30972790-4	chr7	30972319	30973319	+	789.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038860)	promoter-TSS (NR_038860)	650.0	NM_001164185	54135.0	Mm.4067	NM_017405	ENSMUSG00000001247	Lsr	ILDR3|Lisch7	lipolysis stimulated lipoprotein receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40727713-2	chr19	40727213	40728213	+	789.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 7 of 9)	intron (NM_001304721, intron 7 of 9)	67943.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	2.5	4.0	2.0	5.0	4.5	5.5
Merged-chr12-73584155-2	chr12	73583655	73584655	+	789.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313977)	promoter-TSS (NM_001313977)	-641.0	NM_001313977	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79324792-2	chr15	79324292	79325292	+	789.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_016915, intron 1 of 15)	intron (NM_016915, intron 1 of 15)	3579.0	NM_016915	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	2.0	3.0	3.0	0.0	0.0	4.0
Merged-chr5-135779834-2	chr5	135779334	135780334	+	789.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008617, intron 1 of 8)	intron (NM_008617, intron 1 of 8)	1185.0	NM_008617	17448.0	Mm.297096	NM_008617	ENSMUSG00000019179	Mdh2	MDH|Mdh-2|Mor-1|Mor1	malate dehydrogenase 2, NAD (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96687047-2	chr10	96686547	96687547	+	789.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70046.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154139708-2	chr4	154139208	154140208	+	789.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_011642, intron 1 of 13)	CpG	500.0	NM_011642	22062.0	Mm.78015	NM_011642	ENSMUSG00000029026	Trp73	TAp73|Tp73|deltaNp73|p73	transformation related protein 73	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-130547858-3	chr7	130547337	130548337	+	789.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162855)	promoter-TSS (NM_001162855)	-456.0	NM_001162855	67872.0	Mm.21714	NM_001162855	ENSMUSG00000040331	Nsmce4a	2410003A14Rik	NSE4 homolog A, SMC5-SMC6 complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-15985025-3	chr16	15984520	15985520	+	789.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 7 of 18)	intron (NM_001355731, intron 7 of 18)	97734.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46518731-3	chr19	46518242	46519242	+	789.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17094.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44698184-3	chr10	44697686	44698686	+	789.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-239438.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70028529-3	chr14	70028029	70029029	+	789.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 4 of 6)	intron (NM_028560, intron 4 of 6)	-48916.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41338233-5	chr19	41337728	41338728	+	789.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	PB1D10|SINE|Alu	46842.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	71.5	172.0	102.0	41.0	155.0	120.5
Merged-chr11-64610850-4	chr11	64610277	64611277	+	789.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-174103.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	35.0	15.5	22.0	20.5	25.0	56.5
Merged-chr3-35751031-4	chr3	35750549	35751549	+	789.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3014.0	NR_151626	76295.0	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27503820-4	chr2	27503336	27504336	+	789.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	-11311.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-29946571-2	chr16	29946071	29947071	+	789.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32553.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62185806-4	chr18	62185324	62186324	+	789.075012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	5724.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	44.5	62.0	39.5	48.5	84.5	50.5
Merged-chr8-127780972-8	chr8	127780507	127781507	+	789.075012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	481355.0	NM_001013580	93742.0	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3509688-4	chr5	3509207	3510207	+	789.070801	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-34126.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121437232-4	chr14	121436717	121437717	+	789.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57987.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0.0	0.0	3.0	0.0	0.0	3.0
Merged-chr7-118702249-3	chr7	118701739	118702739	+	789.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019580, intron 1 of 5)	B1_Mur1|SINE|Alu	3499.0	NM_019580	56209.0	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	29.0	37.0	32.0	11.5	23.0	7.5
Merged-chr3-79143773-3	chr3	79143276	79144276	+	789.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099624, intron 1 of 23)	intron (NM_001099624, intron 1 of 23)	1111.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.0	0.5	1.0	1.5	9.5	2.0
Merged-chr7-125560733-4	chr7	125560259	125561259	+	789.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008700, intron 1 of 10)	PB1D9|SINE|Alu	8477.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	15.0	92.5	72.0	35.0	57.5	26.0
Merged-chr4-136151248-2	chr4	136150748	136151748	+	789.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7426.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120882376-1	chr14	120881876	120882876	+	789.0	f1_balb.idr	Intergenic	Intergenic	-28818.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr2-172435458-2	chr2	172434958	172435958	+	789.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5120.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105109825-2	chr5	105109325	105110325	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172777, intron 1 of 10)	intron (NM_172777, intron 1 of 10)	467.0	NR_153378	236573.0	Mm.425261	NM_172777	ENSMUSG00000029298	Gbp9	-	guanylate-binding protein 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180841666-2	chr1	180841166	180842166	+	789.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9485.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4306756-1	chr19	4306256	4307256	+	789.0	f1_balb.idr	promoter-TSS (NM_130863)	promoter-TSS (NM_130863)	-534.0	NM_001290818	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	12.0	0.0	2.5	2.0	0.0	2.5
Merged-chr14-21983030-2	chr14	21982530	21983530	+	789.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145459)	TTS (NM_145459)	6571.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-16507257-1	chr5	16506757	16507757	+	789.0	f0_balb.idr	Intergenic	Intergenic	-46238.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53312892-2	chr11	53312392	53313392	+	789.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11797.0	NM_026479	67966.0	Mm.288072	NM_026479	ENSMUSG00000018239	Zcchc10	2410141K03Rik|AA675321|D11Ertd416e	zinc finger, CCHC domain containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157480346-2	chr2	157479846	157480846	+	789.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56053.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	2.5	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67231908-2	chr7	67231408	67232408	+	789.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291191, exon 11 of 11)	3' UTR (NM_001291191, exon 11 of 11)	9292.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45702608-2	chr7	45702108	45703108	+	789.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009800, exon 4 of 9)	exon (NM_009800, exon 4 of 9)	-2639.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-86959777-1	chr3	86959277	86960277	+	789.0	f0_balb.idr	Intergenic	Intergenic	-26809.0	NM_001289449	12480.0	Mm.389465	NM_007640	ENSMUSG00000041750	Cd1d2	CD1.2|Cd1b|Ly-38	CD1d2 antigen	protein-coding	6.5	2.5	0.0	14.5	8.5	10.0
Merged-chr10-70193601-2	chr10	70193101	70194101	+	789.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001111121)	TTS (NM_001111121)	-11063.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-14781748-2	chr9	14781248	14782248	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019683, intron 2 of 2)	intron (NM_019683, intron 2 of 2)	2825.0	NM_019683	56503.0	Mm.272618	NM_019683	ENSMUSG00000031931	Ankrd49	AW060934|C86108|Gbif	ankyrin repeat domain 49	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45444976-2	chr7	45444476	45445476	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030678, intron 10 of 15)	intron (NM_030678, intron 10 of 15)	10137.0	NM_030678	14936.0	Mm.275654	NM_030678	ENSMUSG00000003865	Gys1	Gys3|MGS	glycogen synthase 1, muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43418039-2	chr4	43417539	43418539	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037709, intron 2 of 11)	ID_B1|SINE|B4	11095.0	NM_177377	329831.0	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-123174236-2	chr3	123173749	123174749	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080451, intron 1 of 4)	MER74B|LTR|ERVL	61900.0	NM_080451	118449.0	Mm.34359	NM_080451	ENSMUSG00000050315	Synpo2	1110069I04Rik|2310068J10Rik|9530006G20Rik|AI848603|Myo	synaptopodin 2	protein-coding	6.0	6.0	0.5	5.5	14.0	2.5
Merged-chr7-63931008-1	chr7	63930508	63931508	+	789.0	f1_balb.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	7907.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	13.0	36.0	21.5	6.5	36.0	10.0
Merged-chr15-73598661-2	chr15	73598161	73599161	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357747, intron 2 of 7)	ID4|SINE|ID	-2135.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90508793-2	chr2	90508293	90509293	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	B1_Mur3|SINE|Alu	-29619.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21053824-2	chr5	21053324	21054324	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011203, intron 1 of 17)	intron (NM_011203, intron 1 of 17)	2087.0	NM_001356591	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142391085-2	chr5	142390585	142391585	+	789.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-10412.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118141345-2	chr11	118140845	118141845	+	789.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-12126.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107686257-3	chr4	107685735	107686735	+	789.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2073.0	NM_019872	56296.0	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	1.5	9.5	1.0	2.5	15.5	4.0
Merged-chr19-6999345-2	chr19	6998845	6999845	+	789.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_027351)	TTS (NR_027351)	3214.0	NR_027351	107328.0	Mm.391161	NM_153597	ENSMUSG00000047656	Trpt1	AU079016|AW045591|Tpt1|Tpt1h	tRNA phosphotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120576668-2	chr11	120576168	120577168	+	789.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133796)	TTS (NM_133796)	-3415.0	NM_011032	18453.0	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	5.5	9.0	3.0	3.0	10.5	2.0
Merged-chr13-21234180-1	chr13	21233680	21234680	+	789.0	f0_balb.idr	Intergenic	Intergenic	54249.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	1.5	4.5	0.0	1.0	0.0	2.0
Merged-chr12-112626240-2	chr12	112625740	112626740	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 1 of 12)	intron (NM_007421, intron 1 of 12)	6193.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-36028428-1	chr12	36027928	36028928	+	789.0	f1_balb.idr	intron (NM_025359, intron 1 of 5)	MLT1D|LTR|ERVL-MaLR	14050.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	9.5	19.5	7.0	6.5	44.5	18.0
Merged-chr7-127362610-2	chr7	127362110	127363110	+	789.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13440.0	NM_175560	269997.0	Mm.221270	NM_175560	ENSMUSG00000054381	Zfp747	6430604K15Rik	zinc finger protein 747	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-63617562-3	chr15	63617106	63618106	+	789.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137998.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-25358269-1	chr11	25357769	25358769	+	789.0	f0_balb.idr	intron (NR_045853, intron 5 of 7)	intron (NR_045853, intron 5 of 7)	32162.0	NR_045853	71234.0	Mm.158627	NR_045853	ENSMUSG00000033015	4933427E13Rik	-	RIKEN cDNA 4933427E13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-87861140-2	chr10	87860640	87861640	+	789.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111276)	promoter-TSS (NM_001111276)	29.0	NM_001111276	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	3.5	14.0	25.5	4.5	16.0	19.0
Merged-chr5-95934607-2	chr5	95934107	95935107	+	789.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22332.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84809480-2	chr12	84808980	84809980	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013589, intron 11 of 34)	intron (NM_013589, intron 11 of 34)	36210.0	NM_028863	74316.0	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34251212-2	chr17	34250712	34251712	+	789.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-12015.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	2.0	0.0	7.0	27.5	128.0	56.0
Merged-chr8-108729225-2	chr8	108728725	108729725	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	14581.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88857999-2	chr15	88857499	88858499	+	789.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4195.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30460035-4	chr14	30459551	30460551	+	789.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131095, intron 2 of 3)	intron (NR_131095, intron 2 of 3)	2015.0	NR_131095	77710.0	Mm.410773	NR_131095		4831407H17Rik	-	RIKEN cDNA 4831407H17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-58158379-2	chr2	58157879	58158879	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139200, intron 1 of 7)	intron (NM_139200, intron 1 of 7)	1743.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-57571094-2	chr18	57570594	57571594	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029290, intron 3 of 6)	intron (NM_029290, intron 3 of 6)	-18697.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-19414718-2	chr2	19414218	19415218	+	789.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30945.0	NM_018809	19213.0	Mm.69647	NM_018809	ENSMUSG00000026735	Ptf1a	PTF1-p48|PTF1p48|bHLHa29	pancreas specific transcription factor, 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49084163-2	chr11	49083663	49084663	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271677, intron 1 of 2)	intron (NM_001271677, intron 1 of 2)	-2854.0	NM_001271676	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35983288-2	chr12	35982788	35983788	+	789.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9637.0	NM_011783	23795.0	Mm.7244	NM_011783	ENSMUSG00000020581	Agr2	Agr2h|Gob-4|HAG-2|XAG-2|mAG-2	anterior gradient 2	protein-coding	2.0	0.0	0.0	1.5	0.0	0.0
Merged-chr8-124845336-1	chr8	124844836	124845836	+	789.0	f0_balb.idr	intron (NM_025615, intron 2 of 6)	intron (NM_025615, intron 2 of 6)	17693.0	NM_025615	66523.0	Mm.436864	NM_025615	ENSMUSG00000031984	2810004N23Rik	3110004G14Rik|Ayu21-55|Gt(pU21)55Imeg|GtAyu21-55	RIKEN cDNA 2810004N23 gene	protein-coding	23.5	28.5	12.5	37.5	55.5	76.0
Merged-chr11-107313796-2	chr11	107313296	107314296	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	intron (NR_153311, intron 4 of 9)	-124415.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-60859766-1	chr8	60859266	60860266	+	789.0	f0_balb.idr	Intergenic	Intergenic	-30627.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95648118-2	chr3	95647618	95648618	+	789.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-10603.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.0	0.0	1.5	0.0	0.0	1.0
Merged-chr9-95576368-2	chr9	95575868	95576868	+	789.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16551.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-10178335-2	chr18	10177835	10178835	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009071, intron 1 of 32)	B2_Mm2|SINE|B2	3457.0	NM_009071	19877.0	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71867649-2	chr2	71867138	71868138	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 3 of 3).2	intron (NR_039557, intron 3 of 3).2	-5586.0	NM_172665	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	25.0	17.0	26.5	14.0	4.0	11.0
Merged-chr7-122311309-2	chr7	122310809	122311809	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	22184.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-54120124-2	chr10	54119624	54120624	+	789.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR88b|LTR|Gypsy?	44202.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37697533-2	chr19	37697033	37698033	+	789.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007811)	promoter-TSS (NM_007811)	-275.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79160181-1	chr3	79159681	79160681	+	789.0	f0_balb.idr	Intergenic	Intergenic	-14306.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	1.0	3.5	2.5	1.5	3.0	1.5
Merged-chr17-41409763-1	chr17	41409263	41410263	+	789.0	f1_balb.idr	Intergenic	L1Md_F3|LINE|L1	475078.0	NM_008650	17850.0	Mm.259884	NM_008650	ENSMUSG00000023921	Mut	D230010K02Rik|Mcm	methylmalonyl-Coenzyme A mutase	protein-coding	0.0	0.0	0.0	1.5	2.0	0.0
Merged-chr3-88527296-2	chr3	88526796	88527796	+	789.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5099.0	NM_001029890	72640.0	Mm.275154	NM_001029890	ENSMUSG00000074480	Mex3a	2700083E18Rik|Gm411|Rkhd4	mex3 RNA binding family member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-38563489-2	chr5	38562970	38563970	+	789.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1875.0	NM_011715	22388.0	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	1.0	1.5	1.0	0.0	0.0	0.0
Merged-chr13-55231959-1	chr13	55231459	55232459	+	789.0	f0_balb.idr	intron (NM_008739, intron 2 of 22)	intron (NM_008739, intron 2 of 22)	22177.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-52002431-2	chr12	52001931	52002931	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347404, intron 2 of 3)	intron (NM_001347404, intron 2 of 3)	4076.0	NM_029545	328092.0	Mm.2821	NM_029545	ENSMUSG00000020956	Dtd2	4930578F06Rik|6530401N04Rik|B830049N13Rik	D-tyrosyl-tRNA deacylase 2	protein-coding	7.0	21.0	6.0	3.5	11.0	7.0
Merged-chr3-19430356-1	chr3	19429856	19430856	+	789.0	f0_balb.idr	Intergenic	Intergenic	-78239.0	NM_001163536	66326.0	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	3.5	0.0	0.5	1.0	0.0	0.5
Merged-chr1-64539248-2	chr1	64538748	64539748	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037726, intron 1 of 6)	intron (NM_001037726, intron 1 of 6)	6444.0	NM_001037726	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3090742-1	chr4	3090242	3091242	+	789.0	f1_balb.idr	Intergenic	GSAT_MM|Satellite|Satellite	-81341.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128719054-2	chr2	128718554	128719554	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	20139.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	40.5	126.5	56.5	54.5	92.0	53.5
Merged-chr19-6041942-2	chr19	6041447	6042447	+	789.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-4629.0	NM_028769	74126.0	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	0.5	0.0	1.0	0.0	0.0	1.0
Merged-chr12-52390451-4	chr12	52389957	52390957	+	788.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90152.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3739276-4	chr12	3738764	3739764	+	788.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 12 of 17)	intron (NM_001162465, intron 12 of 17)	-67716.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22457643-3	chr9	22457187	22458187	+	788.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018739, intron 2 of 5)	intron (NM_018739, intron 2 of 5)	10669.0	NM_018739	55934.0	Mm.38235	NM_018739	ENSMUSG00000032239	Rp9	PAP-1|Rp9h	retinitis pigmentosa 9 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34101207-4	chr8	34100741	34101741	+	788.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293759, intron 2 of 7)	intron (NM_001293759, intron 2 of 7)	6573.0	NM_001293758	22428.0	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	3.0	5.5	1.5	2.5	8.0	1.0
Merged-chr2-158462662-2	chr2	158462175	158463175	+	788.916687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291137, intron 20 of 30)	intron (NM_001291137, intron 20 of 30)	-39937.0	NM_145635	246747.0	Mm.28800	NM_145635	ENSMUSG00000044405	Adig	SMAF-1|Smaf1	adipogenin	protein-coding	0.0	0.0	3.0	0.0	3.5	0.0
Merged-chr15-82152175-4	chr15	82151680	82152680	+	788.895813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033218, intron 1 of 18)	intron (NM_033218, intron 1 of 18)	4911.0	NM_033218	20788.0	Mm.38016	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	6.0	6.0	2.5	4.0	13.5	1.0
Merged-chr13-96697944-4	chr13	96697428	96698428	+	788.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-26992.0	NM_008255	15357.0	Mm.316652	NM_008255	ENSMUSG00000021670	Hmgcr	HMG-CoAR|Red	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-25978516-2	chr6	25978016	25979016	+	788.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47090.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86190704-2	chr15	86190204	86191204	+	788.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4563.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133633150-2	chr4	133632650	133633650	+	788.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001017968, exon 1 of 8)	exon (NM_001017968, exon 1 of 8)	279.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	0.0	1.0	7.0	0.0	6.5	14.0
Merged-chr2-23038301-2	chr2	23037801	23038801	+	788.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	intron (NM_001077190, intron 1 of 10)	1940.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127845065-2	chr7	127844565	127845565	+	788.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009294, intron 5 of 10)	ID_B1|SINE|B4	3257.0	NM_009294	20909.0	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-96153226-3	chr7	96152738	96153738	+	788.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18006.0	NM_001310762	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0.0	0.0	1.5	8.5	2.5	0.5
Merged-chr12-56541275-3	chr12	56540776	56541776	+	788.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4368.0	NM_009385	21869.0	Mm.89972	NM_009385	ENSMUSG00000001496	Nkx2-1	AV026640|Nkx2.1|T/EBP|Titf1|Ttf-1	NK2 homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36704139-3	chr16	36703691	36704691	+	788.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 1 of 7)	intron (NM_001285788, intron 1 of 7)	10213.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-104448674-3	chr11	104448099	104449099	+	788.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 2 of 14)	B1_Mur2|SINE|Alu	-6308.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0.0	17.0	0.0	1.0	0.0	0.0
Merged-chr16-64754906-2	chr16	64754406	64755406	+	788.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16033.0	NM_026273	67609.0	Mm.212157	NM_026273	ENSMUSG00000059920	4930453N24Rik	AI649104|din	RIKEN cDNA 4930453N24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-43477779-3	chr18	43477303	43478303	+	788.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-39517.0	NM_001291455	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82834162-3	chr11	82833700	82834700	+	788.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001164570, exon 2 of 8)	5' UTR (NM_001164570, exon 2 of 8)	-5157.0	NM_026097	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-64517054-3	chr11	64516546	64517546	+	788.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178870, intron 1 of 1)	intron (NM_178870, intron 1 of 1)	-80372.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	21.0	41.5	35.5	13.5	26.5	18.0
Merged-chr11-89019575-3	chr11	89019087	89020087	+	788.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009546, exon 9 of 9)	3' UTR (NM_009546, exon 9 of 9)	20184.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	9.5	18.5	12.0	12.0	16.0	12.0
Merged-chr13-34233169-3	chr13	34232656	34233656	+	788.8222049999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	70192.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36482663-4	chr18	36482162	36483162	+	788.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28167.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146784833-3	chr5	146784342	146785342	+	788.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	MLT1E2|LTR|ERVL-MaLR	10114.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	8.5	50.0	26.0	4.5	31.5	8.5
Merged-chr11-113544441-3	chr11	113543916	113544916	+	788.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027216, intron 3 of 9)	intron (NM_027216, intron 3 of 9)	21399.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-34314235-2	chr14	34313735	34314735	+	788.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008133, intron 1 of 12)	B3|SINE|B2	3508.0	NM_008133	14661.0	Mm.10600	NM_008133	ENSMUSG00000021794	Glud1	AI118167|Gdh-X|Glud|Gludl	glutamate dehydrogenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13446671-2	chr16	13446171	13447171	+	788.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2852.0	NR_030549	100124432.0		NR_030549	ENSMUSG00000076972	Mir193b	Mir193|Mirn193b|mir-193b	microRNA 193b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33811321-2	chr17	33810821	33811821	+	788.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_030697, intron 1 of 10)	intron (NM_030697, intron 1 of 10)	798.0	NM_030697	80880.0	Mm.196330	NM_030697	ENSMUSG00000042099	Kank3	0610013D04Rik|Ankrd47|D17Ertd288e|NG28	KN motif and ankyrin repeat domains 3	protein-coding	0.0	5.0	0.5	0.5	0.0	3.5
Merged-chr8-10162425-2	chr8	10161925	10162925	+	788.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001319151, intron 1 of 34)	intron (NM_001319151, intron 1 of 34)	8514.0	NM_001319151	244281.0	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20214987-2	chr11	20214487	20215487	+	788.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 1 of 5)	B3|SINE|B2	13575.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	18.0	10.5	13.0	18.0	7.5	9.5
Merged-chr17-5190772-2	chr17	5190272	5191272	+	788.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	195698.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78172486-2	chr15	78171986	78172986	+	788.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_025931, intron 1 of 6)	intron (NM_025931, intron 1 of 6)	1622.0	NM_025931	67042.0	Mm.30191	NM_025931	ENSMUSG00000016637	Ift27	2600013G09Rik|Rabl4	intraflagellar transport 27	protein-coding	6.0	15.5	10.5	32.0	27.5	21.0
Merged-chr5-99828699-4	chr5	99828182	99829182	+	788.729126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-74709.0	NR_131054	330133.0	Mm.447264	NR_131054	ENSMUSG00000105218	Gm38413	A830083F22|Gm43248	predicted gene, 38413	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80073612-2	chr15	80073112	80074112	+	788.700012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4967.0	NR_028282	100302601.0		NR_028282	ENSMUSG00000077734	Snord83b	MBII-10	small nucleolar RNA, C/D box 83B	snoRNA	1.0	2.0	3.0	3.0	0.0	1.5
Merged-chr9-44479054-8	chr9	44478445	44479445	+	788.697937	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3880.0	NM_001357490	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	4.5	9.5	4.0	6.0	9.5	3.0
Merged-chr8-70561398-3	chr8	70560855	70561855	+	788.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	21680.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	1.0	8.0	9.0	8.5	13.5	11.5
Merged-chr13-56422503-4	chr13	56422012	56423012	+	788.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15843.0	NM_177809	328258.0	Mm.482177	NM_177809	ENSMUSG00000021509	Slc25a48	AU042651|E230025K15	solute carrier family 25, member 48	protein-coding	2.5	1.0	1.0	0.0	0.0	0.0
Merged-chr15-76196613-8	chr15	76196069	76197069	+	788.668762	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201394)	promoter-TSS (NM_201394)	-859.0	NM_201394	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78457268-3	chr10	78456725	78457725	+	788.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172134, intron 1 of 10)	intron (NM_172134, intron 1 of 10)	7723.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145111834-1	chr4	145111334	145112334	+	788.666687	f0_balb.idr	intron (NM_001276465, intron 35 of 69)	intron (NM_001276465, intron 35 of 69)	78832.0	NM_001276502	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90227385-3	chr9	90226912	90227912	+	788.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_194334, exon 5 of 13)	exon (NM_194334, exon 5 of 13)	43357.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99577466-4	chr10	99576989	99577989	+	788.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31682.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-46204736-1	chr6	46204236	46205236	+	788.666687	f0_balb.idr	intron (NM_001004357, intron 9 of 23)	ORR1B2|LTR|ERVL-MaLR	-1039660.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	1.0	3.0	6.0	1.0	0.0	0.0
Merged-chr15-41154936-1	chr15	41154436	41155436	+	788.666687	f0_balb.idr	Intergenic	Intergenic	-18765.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-16490055-3	chr5	16489559	16490559	+	788.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCa|LINE|L1	-63436.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135731583-2	chr1	135731083	135732083	+	788.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_007791, intron 1 of 5)	intron (NM_007791, intron 1 of 5)	2416.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102784803-3	chr14	102784302	102785302	+	788.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	197830.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83029936-3	chr6	83029452	83030452	+	788.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291799)	TTS (NM_001291799)	3519.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	7.0	15.0	17.5	14.5	47.0	50.0
Merged-chr14-47358159-2	chr14	47357676	47358676	+	788.666626	f0_balb.idr|f1_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-15684.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	6.5	9.5	24.0	66.0	133.5	89.5
Merged-chr8-61909492-2	chr8	61908993	61909993	+	788.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6799.0	NM_001293772	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	8.5	5.0	9.5	1.0	0.5	1.5
Merged-chr1-143853947-3	chr1	143853445	143854445	+	788.633362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76667.0	NM_019562	56207.0	Mm.261004	NM_019562	ENSMUSG00000018189	Uchl5	5830413B11Rik|Uch37	ubiquitin carboxyl-terminal esterase L5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53422514-3	chr19	53422027	53423027	+	788.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31893.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73621914-4	chr12	73621412	73622412	+	788.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	37116.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70113640-4	chr12	70113166	70114166	+	788.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1631.0	NR_104397	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	13.0	24.5	9.0	2.5	18.5	18.0
Merged-chr5-130161832-2	chr5	130161332	130162332	+	788.583313	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-9987.0	NM_001199059	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30636606-6	chr2	30636168	30637168	+	788.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41343.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113983937-3	chr13	113983423	113984423	+	788.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 4 of 4)	intron (NM_172595, intron 4 of 4)	167669.0	NR_045836	319803.0	Mm.386896	NM_177004	ENSMUSG00000114213	A430090L17Rik	-	RIKEN cDNA A430090L17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102981032-3	chr2	102980533	102981533	+	788.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79368.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.5	3.5	6.0	0.0	4.5	3.0
Merged-chr10-69275495-3	chr10	69274987	69275987	+	788.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252638, intron 8 of 11)	intron (NM_001252638, intron 8 of 11)	62293.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110598443-6	chr12	110597907	110598907	+	788.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2988.0	NM_030238	13424.0	Mm.181430	NM_030238	ENSMUSG00000018707	Dync1h1	9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325	dynein cytoplasmic 1 heavy chain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-50670583-4	chr2	50670101	50671101	+	788.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-239083.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45741780-2	chr19	45741280	45742280	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166362, intron 2 of 4)	intron (NM_001166362, intron 2 of 4)	1104.0	NM_001166361	14179.0	Mm.4012	NM_010205	ENSMUSG00000025219	Fgf8	Aigf|Fgf-8	fibroblast growth factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-64252590-2	chr2	64252090	64253090	+	788.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-154552.0	NM_001267847	60344.0	Mm.130769	NM_021716	ENSMUSG00000075324	Fign	fi|fidget	fidgetin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98383366-2	chr12	98382847	98383847	+	788.5	f0_balb.idr|f0_c57.idr	Intergenic	RLTR9A2|LTR|ERVK	114712.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100705914-2	chr11	100705414	100706414	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038010, intron 15 of 17)	intron (NM_001038010, intron 15 of 17)	-1643.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76949586-2	chr15	76949086	76950086	+	788.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_054099, exon 3 of 4)	exon (NM_054099, exon 3 of 4)	1325.0	NM_001347540	117171.0	Mm.322968	NM_054099	ENSMUSG00000063236	1110038F14Rik	-	RIKEN cDNA 1110038F14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25837223-3	chr17	25836708	25837708	+	788.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144816)	promoter-TSS (NM_144816)	-81.0	NM_144816	214951.0	Mm.490018	NM_144816	ENSMUSG00000025735	Rhbdl1	Rhbdl	rhomboid like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113006517-2	chr5	113006017	113007017	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	9021.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-73553620-2	chr5	73553120	73554120	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190733, intron 8 of 9)	intron (NM_001190733, intron 8 of 9)	62594.0	NM_178896	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr3-127492189-2	chr3	127491688	127492688	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	6927.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	19.0	62.0	35.0	1.0	9.0	2.5
Merged-chr17-74872877-2	chr17	74872354	74873354	+	788.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132675.0	NM_019919	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	0.0	0.0	1.5	0.0	3.0	0.0
Merged-chr3-31137691-2	chr3	31137191	31138191	+	788.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12229.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132599769-2	chr7	132599269	132600269	+	788.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009123)	promoter-TSS (NM_009123)	-132.0	NM_009123	20231.0	Mm.334281	NM_009123	ENSMUSG00000048528	Nkx1-2	Nkx-1.1|Nkx-1.2|Sax1	NK1 homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81147260-2	chr10	81146760	81147760	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010731, intron 2 of 2)	PB1D10|SINE|Alu	10989.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-85341647-2	chr6	85341147	85342147	+	788.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001003955, exon 4 of 6)	exon (NM_001003955, exon 4 of 6)	-5274.0	NR_030486	735267.0		NR_030486	ENSMUSG00000076012	Mir705	Mirn705|mmu-mir-705	microRNA 705	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165955478-2	chr2	165954978	165955978	+	788.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-37159.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	8.5	28.0	11.5	9.0	26.5	10.0
Merged-chr5-98168919-2	chr5	98168419	98169419	+	788.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11950.0	NM_029947	77630.0	Mm.332511	NM_029947	ENSMUSG00000035456	Prdm8	4930565F05Rik|PFM5	PR domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114412266-2	chr5	114411766	114412766	+	788.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_054093, exon 22 of 28)	exon (NM_054093, exon 22 of 28)	7798.0	NR_105994	102465621.0		NR_105994	ENSMUSG00000098731	Mir7027	Gm27831|mmu-mir-7027	microRNA 7027	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84244856-2	chr15	84244251	84245251	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	intron (NM_133167, intron 1 of 12)	12708.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	6.0	17.0	5.5	2.5	14.5	4.5
Merged-chr12-70939666-2	chr12	70939166	70940166	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019785, intron 1 of 12)	intron (NM_019785, intron 1 of 12)	1809.0	NM_019785	56444.0	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-193002501-2	chr1	193001995	193002995	+	788.5	f0_c57.idr|f1_c57bl6.idr	intron (NM_001301370, intron 2 of 8)	intron (NM_001301370, intron 2 of 8)	33280.0	NM_001301370	329324.0	Mm.76710	NM_181546	ENSMUSG00000016200	Syt14	B230320I09Rik|sytXIV	synaptotagmin XIV	protein-coding	0.0	2.0	0.5	3.5	4.0	5.5
Merged-chr2-18890556-1	chr2	18890056	18891056	+	788.5	f0_balb.idr	intron (NM_008845, intron 3 of 9)	intron (NM_008845, intron 3 of 9)	-88738.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34201782-2	chr17	34201282	34202282	+	788.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010724)	TTS (NM_010724)	-2697.0	NM_011530	21355.0	Mm.14814	NM_011530	ENSMUSG00000024339	Tap2	ABC18|AI462429|APT2|Abcb3|Ham-2|Ham2|MTP2|PSF2|RING11|Tap-2|Y1|jas	transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94359461-2	chr11	94358961	94359961	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 21 of 30)	intron (NM_029600, intron 21 of 30)	31460.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0.0	0.0	1.5	0.0	2.5	0.0
Merged-chr10-53504889-2	chr10	53504389	53505389	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_037973, intron 3 of 3)	intron (NR_037973, intron 3 of 3)	14100.0	NR_037973	100502868.0	Mm.297722	NR_037973	ENSMUSG00000112739	Gm20597	B230314j19	predicted gene, 20597	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86802938-3	chr17	86802439	86803439	+	788.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010137, intron 2 of 15)	intron (NM_010137, intron 2 of 15)	49075.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120492177-2	chr9	120491677	120492677	+	788.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026892)	promoter-TSS (NM_026892)	-429.0	NM_026892	68969.0	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84786539-2	chr18	84786039	84787039	+	788.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42472.0	NR_155706	102641800.0		NR_155706		Gm38576	-	predicted gene, 38576	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34880247-2	chr6	34879747	34880747	+	788.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001013366)	TTS (NM_001013366)	-2182.0	NM_001135611	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27667949-2	chr15	27667449	27668449	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	13593.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20533410-4	chr11	20532917	20533917	+	788.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9836.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	6.5	19.5	17.5	5.5	27.5	5.5
Merged-chr18-25486582-2	chr18	25486082	25487082	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_155531, intron 12 of 13)	intron (NR_155531, intron 12 of 13)	193166.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-3015719-3	chr9	3015220	3016220	+	788.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	23023.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61418152-4	chr11	61417702	61418702	+	788.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35790.0	NM_009548	22671.0	Mm.89201	NM_009548	ENSMUSG00000010086	Rnf112	ZNF179|Zfp179|bfp|neurolastin	ring finger protein 112	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164523557-2	chr2	164523003	164524003	+	788.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44B|LTR|ERVK	25978.0	NM_133779	78928.0	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding	27.0	36.5	20.5	15.5	48.0	12.0
Merged-chr1-92082119-2	chr1	92081619	92082619	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207225, intron 2 of 26)	intron (NM_207225, intron 2 of 26)	98222.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-90740850-4	chr6	90740349	90741349	+	788.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356440, intron 1 of 13)	intron (NM_001356440, intron 1 of 13)	-24320.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97210178-4	chr7	97209678	97210678	+	788.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	115786.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	36.0	57.0	20.0	21.0	53.0	24.0
Merged-chr7-35035616-2	chr7	35035116	35036116	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 12 of 14)	intron (NM_008820, intron 12 of 14)	20950.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102874120-2	chr2	102873620	102874620	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	27545.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	6.0	10.5	1.5	4.5	2.0	5.0
Merged-chr7-31040514-2	chr7	31040014	31041014	+	788.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106017)	promoter-TSS (NR_106017)	-197.0	NR_106017	102465635.0		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-163312313-2	chr1	163311813	163312813	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025570, intron 1 of 2)	CpG	1337.0	NM_011127	18933.0	Mm.288642	NM_011127	ENSMUSG00000026586	Prrx1	A230024N07Rik|AA755424|AI385634|AI843499|K-2|Pmx|Pmx1|Prx1|mHox	paired related homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19320941-2	chr7	19320441	19321441	+	788.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-10896.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75772024-2	chr11	75771524	75772524	+	788.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_007873, exon 9 of 9)	exon (NM_007873, exon 9 of 9)	-23785.0	NR_136933	102641247.0	Mm.411386	NR_136932		Gm12339	-	predicted gene 12339	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10969499-2	chr19	10968999	10969999	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023529, intron 1 of 8)	MIRb|SINE|MIR	5171.0	NM_023529	69826.0	Mm.273404	NM_023529	ENSMUSG00000024731	Ms4a10	2010001N17Rik	membrane-spanning 4-domains, subfamily A, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98704972-2	chr10	98704472	98705472	+	788.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-209670.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45641614-2	chr7	45641114	45642114	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172418, intron 2 of 9)	intron (NM_172418, intron 2 of 9)	1637.0	NM_172418	74490.0	Mm.107442	NM_172418	ENSMUSG00000042918	Mamstr	2810022D01Rik|5430432N15Rik|AW743872|Mastr	MEF2 activating motif and SAP domain containing transcriptional regulator	protein-coding	4.5	0.5	0.0	0.0	2.0	1.0
Merged-chr5-137783946-2	chr5	137783446	137784446	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144913, intron 1 of 3)	intron (NM_144913, intron 1 of 3)	2755.0	NM_144913	231803.0	Mm.61193	NM_144913	ENSMUSG00000029726	Mepce	Bcdin3|D5Wsu46e	methylphosphate capping enzyme	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131984180-2	chr2	131983680	131984680	+	788.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	33143.0	NM_001278520	26434.0	Mm.180750	NM_023043	ENSMUSG00000027338	Prnd	AI450264|Dpl|PrPLP|doppel	prion like protein doppel	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-117242878-2	chr13	117242378	117243378	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010330, intron 2 of 8)	intron (NM_010330, intron 2 of 8)	22305.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0.0	3.0	1.0	0.0	3.0	1.0
Merged-chr11-97746106-2	chr11	97745606	97746606	+	788.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026186, exon 10 of 10)	3' UTR (NM_026186, exon 10 of 10)	1209.0	NR_106180	102466256.0		NR_106180	ENSMUSG00000098919	Mir8102	Gm27795|mmu-mir-8102	microRNA 8102	ncRNA	1.0	0.0	8.0	3.5	3.0	0.0
Merged-chr14-87419095-2	chr14	87418595	87419595	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253755, intron 1 of 11)	intron (NM_001253755, intron 1 of 11)	2512.0	NM_001253755	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	1.0	2.0	1.0	2.0	2.0	4.0
Merged-chr14-22102559-4	chr14	22102049	22103049	+	788.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 2 of 6)	BLACKJACK|DNA|hAT-Blackjack	82837.0	NM_028275	76633.0	Mm.489898	NM_028275	ENSMUSG00000063458	Lrmda	1700112E06Rik|2700009F18Rik	leucine rich melanocyte differentiation associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136568103-4	chr5	136567582	136568582	+	788.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009986)	promoter-TSS (NM_009986)	-592.0	NM_001291238	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	12.0	21.5	11.5	10.5	29.5	12.5
Merged-chr18-61477655-4	chr18	61477168	61478168	+	788.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045419, intron 1 of 3)	intron (NR_045419, intron 1 of 3)	6939.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117267488-3	chr4	117267000	117268000	+	788.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029589, intron 3 of 3)	intron (NM_029589, intron 3 of 3)	15160.0	NM_029589	68777.0	Mm.331805	NM_026837	ENSMUSG00000048772	Tmem53	1110038M16Rik|1500001P22Rik|1700012A05Rik	transmembrane protein 53	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102609855-3	chr4	102609367	102610367	+	788.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	20024.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	2.5	0.5	3.0	5.5	5.5	1.0
Merged-chr5-96896226-3	chr5	96895716	96896716	+	788.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25056.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	6.5	3.5	1.5	0.5	6.0	6.0
Merged-chr2-32566892-3	chr2	32566378	32567378	+	788.43335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153560, intron 10 of 10)	intron (NM_153560, intron 10 of 10)	-3980.0	NM_010073	13481.0	Mm.22001	NM_010073	ENSMUSG00000026810	Dpm2	AW557993|R75484	dolichol-phosphate (beta-D) mannosyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131933672-4	chr1	131933163	131934163	+	788.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175294, exon 7 of 7)	3' UTR (NM_175294, exon 7 of 7)	23205.0	NM_175294	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	0.0	6.0	4.0	1.5	2.0	0.0
Merged-chr1-36617027-4	chr1	36616533	36617533	+	788.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201365, intron 6 of 9)	Lx7|LINE|L1	-23701.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72345874-4	chr6	72345377	72346377	+	788.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138592)	promoter-TSS (NM_138592)	-702.0	NM_138592	28035.0	Mm.281900	NM_138592	ENSMUSG00000056305	Usp39	AA408960|AI894154|CGI-21|D6Wsu157e|SAD1	ubiquitin specific peptidase 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-43830613-4	chr14	43830111	43831111	+	788.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-10972.0	NM_007894	13586.0	Mm.86948	NM_007894	ENSMUSG00000072601	Ear1	EAR-1|ECP 1|Raf1	eosinophil-associated, ribonuclease A family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-25087145-3	chr5	25086662	25087662	+	788.399963	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 1 of 15)	intron (NM_145401, intron 1 of 15)	13480.0	NM_145401	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-53673775-3	chr9	53673271	53674271	+	788.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6264.0	NM_027807	75717.0	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167240576-4	chr2	167240076	167241076	+	788.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008968)	promoter-TSS (NM_008968)	-39.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78455315-4	chr17	78454813	78455813	+	788.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37161.0	NM_001285940	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83647232-3	chr6	83646731	83647731	+	788.355591	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016751, intron 4 of 6)	intron (NM_016751, intron 4 of 6)	8885.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62045135-4	chr18	62044587	62045587	+	788.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	92012.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	73.5	127.5	86.5	70.5	173.5	54.0
Merged-chr7-16050782-2	chr7	16050315	16051315	+	788.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21030.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	6.0	10.0	7.5	10.0	0.0	7.5
Merged-chr13-52639733-2	chr13	52639233	52640233	+	788.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 10 of 13)	B4|SINE|B4	42851.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69422596-2	chr11	69422096	69423096	+	788.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081330, exon 82 of 86)	exon (NM_001081330, exon 82 of 86)	-8921.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr11-70455248-2	chr11	70454748	70455748	+	788.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023158)	TTS (NM_023158)	3317.0	NM_025397	66172.0	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3723979-4	chr2	3723511	3724511	+	788.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	10553.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-83742969-1	chr2	83742469	83743469	+	788.333313	f0_balb.idr	intron (NM_008402, intron 2 of 29)	intron (NM_008402, intron 2 of 29)	18572.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165724922-1	chr1	165724422	165725422	+	788.333313	f0_balb.idr	Intergenic	Intergenic	-16828.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134092194-3	chr6	134091660	134092660	+	788.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	56460.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.0	29.5	6.0	1.0	26.0	8.5
Merged-chr15-99392316-1	chr15	99391816	99392816	+	788.333313	f1_c57bl6.idr	promoter-TSS (NM_026669)	promoter-TSS (NM_026669)	-631.0	NM_026669	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	89.0	179.5	140.0	20.5	88.5	42.0
Merged-chr11-59810905-3	chr11	59810422	59811422	+	788.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271356)	promoter-TSS (NM_001271356)	842.0	NR_045686	100504104.0	Mm.391737	NR_045686	ENSMUSG00000087249	Gm16062	-	predicted gene 16062	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64178664-1	chr15	64178164	64179164	+	788.333313	f0_balb.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	-118216.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0	4.0	5.0	0.0	4.0	5.0
Merged-chr5-121194294-3	chr5	121193790	121194790	+	788.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-2893.0	NM_011202	19247.0	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	0.0	0.0	0.0	0.0	4.0	1.0
Merged-chr18-61014711-3	chr18	61014221	61015221	+	788.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201353)	promoter-TSS (NM_201353)	-522.0	NM_201353	240332.0	Mm.39846	NM_201353	ENSMUSG00000052026	Slc6a7	AW455934|PROT	solute carrier family 6 (neurotransmitter transporter, L-proline), member 7	protein-coding	0.0	4.0	0.0	0.0	2.0	0.0
Merged-chr11-72428801-3	chr11	72428302	72429302	+	788.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6724.0	NM_027819	71522.0	Mm.23336	NM_027819	ENSMUSG00000040471	Ggt6	9030405D14Rik|AI427679|AW490214	gamma-glutamyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55301994-3	chr12	55301459	55302459	+	788.291687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025373)	promoter-TSS (NM_025373)	-678.0	NM_025373	66132.0	Mm.383213	NM_025373	ENSMUSG00000021023	1110008L16Rik	Kiaa0391|Mrpp3|mKIAA0391	RIKEN cDNA 1110008L16 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-49035955-4	chr6	49035464	49036464	+	788.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053110)	promoter-TSS (NM_053110)	-554.0	NM_053110	93695.0	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	1.5	2.5	3.0	0.0	2.5	4.5
Merged-chr4-119964766-2	chr4	119964266	119965266	+	788.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	150088.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	1.5	2.0	6.5	10.0	19.0	18.5
Merged-chr2-59343793-2	chr2	59343293	59344293	+	788.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 16 of 20)	intron (NM_175464, intron 16 of 20)	42889.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63863560-2	chr4	63863060	63864060	+	788.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-2276.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-137992476-4	chr3	137991899	137992899	+	788.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10850.0	NM_011932	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	1.0	0.0	1.0	2.0	3.5	2.0
Merged-chr9-108262759-2	chr9	108262259	108263259	+	788.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276486, intron 1 of 3)	intron (NM_001276486, intron 1 of 3)	1056.0	NM_001276493	13138.0	Mm.7524	NM_010017	ENSMUSG00000039952	Dag1	D9Wsu13e|DG|Dp427|Dp71	dystroglycan 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126519304-2	chr7	126518804	126519804	+	788.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15867.0	NM_183020	233871.0	Mm.231450	NM_183020	ENSMUSG00000032637	Atxn2l	A2D|A2LG|A2RP|A2lp|Atxnl2	ataxin 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-79862240-2	chr17	79861740	79862740	+	788.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357752, intron 4 of 13)	intron (NM_001357752, intron 4 of 13)	33883.0	NM_178050	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96758810-2	chr3	96758310	96759310	+	788.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_026406, intron 3 of 8)	intron (NM_026406, intron 3 of 8)	31199.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32187428-4	chr18	32186921	32187921	+	788.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011946, intron 1 of 16)	intron (NM_011946, intron 1 of 16)	24332.0	NM_011946	26405.0	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134561117-3	chr1	134560636	134561636	+	788.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152895, intron 1 of 26)	CpG	958.0	NM_152895	75605.0	Mm.28995	NM_152895	ENSMUSG00000042207	Kdm5b	2010009J12Rik|2210016I17Rik|AW556288|D1Ertd202e|Jarid1b|PLU-1|PUT1|Plu1|RBBP2H1A|Rb-Bp2|mKIAA4034	lysine (K)-specific demethylase 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90247831-3	chr5	90247339	90248339	+	788.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198010, intron 27 of 32)	ORR1A2-int|LTR|ERVL-MaLR	-23843.0	NM_001163456	231430.0	Mm.319697	NM_001033310	ENSMUSG00000035505	Cox18	BC038311	cytochrome c oxidase assembly protein 18	protein-coding	11.0	16.5	26.0	14.5	49.0	53.0
Merged-chr19-4398258-1	chr19	4397758	4398758	+	788.200012	f0_balb.idr	Intergenic	CpG	-1181.0	NM_001001984	225876.0	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81859706-4	chr7	81859221	81860221	+	788.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111910, intron 1 of 7)	intron (NR_111910, intron 1 of 7)	720.0	NM_145375	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-87854587-4	chr10	87854061	87855061	+	788.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3704.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110286983-4	chr7	110286430	110287430	+	788.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65227.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-75856551-2	chr12	75856051	75857051	+	788.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005510, intron 2 of 115)	intron (NM_001005510, intron 2 of 115)	38233.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-22816466-4	chr2	22815958	22816958	+	788.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	ORR1E|LTR|ERVL-MaLR	42131.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-88977111-2	chr9	88976611	88977611	+	788.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20191.0	NM_009742	12044.0	Mm.425593	NM_009742	ENSMUSG00000102037	Bcl2a1a	A1|BB218357|Bcl2a1|Bfl-1|Hbpa1	B cell leukemia/lymphoma 2 related protein A1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-6572438-2	chr8	6571938	6572938	+	788.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1467151.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46620613-2	chr8	46620113	46621113	+	788.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001284409, intron 1 of 6)	intron (NM_001284409, intron 1 of 6)	3322.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36760845-2	chr15	36760345	36761345	+	788.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	30087.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80560788-3	chr10	80560270	80561270	+	788.155579	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025852, intron 1 of 14)	intron (NM_025852, intron 1 of 14)	790.0	NM_025852	66932.0	Mm.1116	NM_025852	ENSMUSG00000047417	Rexo1	1700021P10Rik|2610511M11Rik|AW050347|EloA-BP1|Rex1|Tceb3bp1	REX1, RNA exonuclease 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17257108-3	chr12	17256568	17257568	+	788.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9527.0	NM_027959	71853.0	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	2.0	5.0	1.5	5.0	1.5	2.5
Merged-chr2-128368004-4	chr2	128367482	128368482	+	788.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028590, intron 1 of 2)	L3b|LINE|CR1	61369.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	6.5	2.5	13.5	3.0	8.5	5.5
Merged-chr11-101647177-2	chr11	101646677	101647677	+	788.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-18364.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29001243-3	chr7	29000756	29001756	+	788.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355054, intron 28 of 31)	intron (NM_001355054, intron 28 of 31)	18402.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	0.0	3.5	0.0	0.0	6.5	0.0
Merged-chr3-67557926-2	chr3	67557424	67558424	+	788.083374	f0_balb.idr|f0_c57.idr	Intergenic	Lx8|LINE|L1	-24844.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	5.5	12.5	6.5	0.0	6.0	0.5
Merged-chr6-5633203-4	chr6	5632704	5633704	+	788.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92435.0	NM_001191023	13426.0	Mm.20893	NM_010063	ENSMUSG00000029757	Dync1i1	DH IC-1|DHIC-1|DIC|Dncic1|IC74	dynein cytoplasmic 1 intermediate chain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102244874-2	chr7	102244377	102245377	+	788.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	5241.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	39.5	42.0	47.5	24.0	68.5	40.5
Merged-chr19-56763849-3	chr19	56763363	56764363	+	788.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41491.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13301379-4	chr9	13300944	13301944	+	788.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54488.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	0.0	0.0	0.0	1.5	10.5	2.0
Merged-chr2-103058428-3	chr2	103057924	103058924	+	788.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175094, intron 2 of 10)	intron (NM_175094, intron 2 of 10)	15089.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	0.0	4.5	3.0	0.0	5.0	3.5
Merged-chr4-63846014-2	chr4	63845514	63846514	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009403, intron 2 of 3)	intron (NM_009403, intron 2 of 3)	15270.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135490768-3	chr7	135490259	135491259	+	788.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37895.0	NM_178669	212070.0	Mm.39721	NM_178669	ENSMUSG00000050866	Clrn3	AI649392|Tmem12	clarin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121886984-2	chr3	121886484	121887484	+	788.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(C)n|Simple_repeat|Simple_repeat	-66245.0	NM_172525	214137.0	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57653131-2	chr9	57652631	57653631	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 1 of 14)	intron (NM_001304761, intron 1 of 14)	500.0	NM_001304761	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153804272-2	chr1	153803772	153804772	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243223, intron 12 of 20)	intron (NM_001243223, intron 12 of 20)	39869.0	NM_001243223	240816.0	Mm.329340	NM_001243223	ENSMUSG00000042641	Rgsl1	4930415K13Rik|Gm202|Rgsl2	regulator of G-protein signaling like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131378178-3	chr1	131377632	131378632	+	788.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 4 of 22)	intron (NM_001081011, intron 4 of 22)	-98569.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	4.5	13.0	4.5	4.0	6.0	5.5
Merged-chr6-87839864-2	chr6	87839364	87840364	+	788.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1105.0	NM_133934	57905.0	Mm.241546	NM_133934	ENSMUSG00000030056	Isy1	5830446M03Rik|AI181014|AU020769	ISY1 splicing factor homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16776058-2	chr7	16775558	16776558	+	788.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5288.0	NM_009201	20514.0	Mm.1056	NM_009201	ENSMUSG00000001918	Slc1a5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC|Slc1a7	solute carrier family 1 (neutral amino acid transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-56798437-2	chr6	56797937	56798937	+	788.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145958)	promoter-TSS (NM_145958)	-624.0	NM_001362213	210973.0	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43762567-2	chr13	43762067	43763067	+	788.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-22545.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	4.0	3.5	2.0	2.5	4.5	5.5
Merged-chr8-73234712-2	chr8	73234212	73235212	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010687, intron 1 of 14)	B4A|SINE|B4	118828.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	1.5	5.5	2.5	2.5	4.5	1.5
Merged-chr4-11085018-5	chr4	11084553	11085553	+	788.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8848.0	NM_001085493	76947.0	Mm.275265	NM_001085493	ENSMUSG00000050323	Ndufaf6	2310030N02Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106230794-2	chr1	106230294	106231294	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 1 of 16)	RMER19A|LTR|ERVK	58925.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76942852-2	chr12	76942352	76943352	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361663, intron 3 of 4)	intron (NM_001361663, intron 3 of 4)	19396.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-74097959-2	chr5	74097459	74098459	+	788.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4429.0	NR_031758	100313943.0	Mm.46547	NR_031758	ENSMUSG00000093355	Snora26	MBI-6	small nucleolar RNA, H/ACA box 26	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49170941-2	chr13	49170441	49171441	+	788.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16606.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-92851144-1	chr8	92850644	92851644	+	788.0	f1_c57bl6.idr	intron (NM_008610, intron 12 of 12)	(TG)n|Simple_repeat|Simple_repeat	-4189.0	NM_173014	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	7.0	9.5	11.5	5.0	0.0	8.0
Merged-chr2-161109748-2	chr2	161109232	161110232	+	788.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_173368)	promoter-TSS (NM_173368)	-646.0	NR_126509	71389.0	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	2.5	2.0	3.0	0.0	2.0	2.0
Merged-chr10-41598465-2	chr10	41597965	41598965	+	788.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001358562, exon 30 of 48)	exon (NM_001358562, exon 30 of 48)	30449.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132199569-2	chr1	132199069	132200069	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033250, intron 1 of 3)	(TTTTTG)n|Simple_repeat|Simple_repeat	1481.0	NR_029777	723818.0		NR_029777	ENSMUSG00000065435	Mir135b	Mirn135b|mir-135b	microRNA 135b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64078247-2	chr15	64077747	64078747	+	788.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-17799.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	4.0	9.5	5.0	4.0	13.5	5.5
Merged-chr17-78882062-2	chr17	78881561	78882561	+	788.0	f0_balb.idr|f0_c57.idr	intron (NM_011163, intron 1 of 15)	intron (NM_011163, intron 1 of 15)	511.0	NM_011163	19106.0	Mm.378990	NM_011163	ENSMUSG00000024079	Eif2ak2	2310047A08Rik|4732414G15Rik|AI467567|AI747578|Pkr|Prkr|Tik	eukaryotic translation initiation factor 2-alpha kinase 2	protein-coding	10.5	24.5	23.5	10.0	4.5	11.0
Merged-chr1-91066629-2	chr1	91066129	91067129	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	13185.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60802286-4	chr11	60801782	60802782	+	788.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009171, intron 3 of 11)	PB1D10|SINE|Alu	8983.0	NM_009171	20425.0	Mm.364956	NM_009171	ENSMUSG00000020534	Shmt1	AI324848|AI385541|C81125|Shmt|mshmt|mshmt1|mshmt2	serine hydroxymethyltransferase 1 (soluble)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86418872-3	chr6	86418376	86419376	+	788.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164078, intron 3 of 11)	intron (NM_001164078, intron 3 of 11)	14657.0	NM_001164078	21841.0	Mm.333219	NM_011585	ENSMUSG00000071337	Tia1	2310050N03Rik|AI256674|TIA-1|mTIA-1	cytotoxic granule-associated RNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70503196-3	chr8	70502709	70503709	+	788.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018827, intron 6 of 8)	intron (NM_018827, intron 6 of 8)	3217.0	NR_151646	66462.0	Mm.28242	NM_025577	ENSMUSG00000058833	Rex1bd	2810428I15Rik	required for excision 1-B domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr3-87407282-1	chr3	87406782	87407782	+	788.0	f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-28500.0	NM_001113238	329693.0	Mm.331122	NM_183222	ENSMUSG00000048031	Fcrl5	Fcrh3|mBXMH2	Fc receptor-like 5	protein-coding	0.5	10.5	4.0	3.0	11.0	10.0
Merged-chr4-136151838-2	chr4	136151338	136152338	+	788.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8016.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-106571075-1	chr7	106570575	106571575	+	788.0	f0_balb.idr	Intergenic	Lx7|LINE|L1	73570.0	NM_001277179	434223.0	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	14.0	8.5	9.5	0.0	12.0	14.5
Merged-chr9-40251909-2	chr9	40251409	40252409	+	788.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17307.0	NM_001083917	235281.0	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69559894-2	chr11	69559394	69560394	+	788.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007911, exon 1 of 5)	5' UTR (NM_007911, exon 1 of 5)	343.0	NM_007911	13643.0	Mm.249637	NM_007911	ENSMUSG00000003934	Efnb3	EFL-6|ELF-3|Elk-L3|Epl8|LERK-8|NLERK-2	ephrin B3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-57739442-2	chr3	57738926	57739926	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_130743, intron 1 of 9)	B2_Mm1t|SINE|B2	3369.0	NR_130743	24017.0	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-16523890-2	chr16	16523390	16524390	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	MER21C|LTR|ERVL	3521.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25871790-2	chr17	25871290	25872290	+	788.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3052.0	NM_026633	68241.0	Mm.328870	NM_026633	ENSMUSG00000025732	Mcrip2	9530058B02Rik|Fam195a	MAPK regulated corepressor interacting protein 2	protein-coding	0.0	3.5	0.0	0.0	0.0	0.0
Merged-chr1-36134314-2	chr1	36133814	36134814	+	788.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	9999.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32350596-2	chr11	32350096	32351096	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177364, intron 1 of 12)	MLT1A1|LTR|ERVL-MaLR	2785.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-84586177-2	chr16	84585673	84586673	+	788.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-93616.0	NR_040537	78023.0	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	0.0	6.5	2.0	0.0	5.5	2.0
Merged-chr16-77012161-2	chr16	77011661	77012661	+	788.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1280.0	NR_040573	76601.0	Mm.396217	NR_040573	ENSMUSG00000100857	1700041M19Rik	-	RIKEN cDNA 1700041M19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111941361-1	chr8	111940861	111941861	+	788.0	f0_c57.idr	intron (NM_026693, intron 2 of 3)	intron (NM_026693, intron 2 of 3)	658.0	NM_026693	93739.0	Mm.371666	NM_026693	ENSMUSG00000031950	Gabarapl2	0610012F20Rik|2900019O08Rik|AI173605|GATE-16|Gef2	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2	protein-coding	2.0	16.5	8.0	2.5	4.0	9.0
Merged-chr15-27673984-2	chr15	27673484	27674484	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	RMER17C|LTR|ERVK	7558.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81187898-2	chr10	81187398	81188398	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190473, intron 2 of 8)	B1_Mur2|SINE|Alu	3980.0	NM_007828	13144.0	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44098806-2	chr16	44098306	44099306	+	788.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007508, exon 12 of 15)	exon (NM_007508, exon 12 of 15)	40453.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116136196-2	chr9	116135696	116136696	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	39167.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	2.0	18.5	23.0	3.0	14.0	13.0
Merged-chr10-23858259-2	chr10	23857742	23858742	+	788.0	f0_c57.idr|f1_balb.idr	intron (NM_011979, intron 3 of 6)	MMETn-int|LTR|ERVK	6780.0	NM_011979	26464.0	Mm.27334	NM_011979	ENSMUSG00000020010	Vnn3	-	vanin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120742315-2	chr5	120741815	120742815	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347448, intron 4 of 11)	B3|SINE|B2	7533.0	NM_145227	246728.0	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-124256893-2	chr9	124256393	124257393	+	788.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55801.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105930480-2	chr8	105929980	105930980	+	788.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173432, exon 3 of 3)	3' UTR (NM_173432, exon 3 of 3)	3382.0	NM_023182	109660.0	Mm.2745	NM_023182	ENSMUSG00000031896	Ctrl	0910001G08Rik|1810004D15Rik|AV005227|Ctra-1|Ctra1|chymopasin|mFLJ00366	chymotrypsin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-116542636-2	chr14	116542136	116543136	+	788.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-382661.0	NM_001079844	23888.0	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88332974-2	chr10	88332474	88333474	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 4 of 6)	MT2B|LTR|ERVL	24101.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117511051-2	chr5	117510551	117511551	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 3 of 19)	intron (NM_001312914, intron 3 of 19)	97049.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0.0	1.0	0.0	0.0	1.0	0.0
Merged-chr3-138442316-1	chr3	138441816	138442816	+	788.0	f0_c57.idr	promoter-TSS (NM_007410)	promoter-TSS (NM_007410)	-777.0	NM_007410	11532.0	Mm.3874	NM_007410	ENSMUSG00000028138	Adh5	Adh-5|Adh3|GSNOR	alcohol dehydrogenase 5 (class III), chi polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16746338-2	chr7	16745838	16746838	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198613, intron 2 of 4)	ID4|SINE|ID	7894.0	NM_198613	232910.0	Mm.333597	NM_198613	ENSMUSG00000008036	Ap2s1	AI043088	adaptor-related protein complex 2, sigma 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80470983-3	chr18	80470475	80471475	+	788.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1308.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	8.0	40.5	10.0	9.5	28.0	12.0
Merged-chr8-123331595-4	chr8	123331082	123332082	+	788.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1131.0	NM_172287	234857.0	Mm.150200	NM_172287	ENSMUSG00000010154	Spire2	BC026502|Spir-2|Spir2	spire type actin nucleation factor 2	protein-coding	0.0	0.0	1.5	0.0	0.0	2.0
Merged-chr18-14889095-1	chr18	14888595	14889595	+	788.0	f1_c57bl6.idr	intron (NM_001100449, intron 14 of 14)	intron (NM_001100449, intron 14 of 14)	-99900.0	NR_045372	74456.0	Mm.391075	NR_045372		4933424G05Rik	-	RIKEN cDNA 4933424G05 gene	ncRNA	0.0	1.5	0.5	0.0	0.0	0.0
Merged-chr17-80277768-2	chr17	80277268	80278268	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198942, intron 2 of 22)	intron (NM_198942, intron 2 of 22)	-12444.0	NM_194269	378462.0	Mm.45208	NM_194269	ENSMUSG00000045257	Morn2	Mopt	MORN repeat containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-103807558-3	chr13	103807033	103808033	+	787.972229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-32925.0	NM_001361085	218543.0	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32863499-3	chr2	32862893	32863893	+	787.972229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12741.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24315621-4	chr2	24315121	24316121	+	787.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-21239.0	NM_031167	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-91182769-3	chr10	91182245	91183245	+	787.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11126.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6015422-6	chr19	6015010	6016010	+	787.896851	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007600)	promoter-TSS (NM_007600)	-263.0	NM_007600	12333.0	Mm.6221	NM_007600	ENSMUSG00000024942	Capn1	Capa-1|Capa1|mu-calpin	calpain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47087452-3	chr14	47086960	47087960	+	787.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 9 of 12)	MIRb|SINE|MIR	18483.0	NM_001310544	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	2.0	1.5	3.0	0.0	3.5	3.5
Merged-chr19-10940586-3	chr19	10940094	10941094	+	787.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023731)	TTS (NM_023731)	3434.0	NM_009962	14764.0	Mm.470721	NM_009962	ENSMUSG00000034117	Ptgdr2	Crth2|Gpr44|Grp45	prostaglandin D2 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69092998-5	chr8	69092456	69093456	+	787.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007509, intron 1 of 13)	intron (NM_007509, intron 1 of 13)	-3734.0	NM_153054	110877.0	Mm.19301	NM_153054	ENSMUSG00000036330	Slc18a1	4832416I10Rik|Vat1|Vmat1	solute carrier family 18 (vesicular monoamine), member 1	protein-coding	8.0	45.5	44.5	18.0	55.5	14.5
Merged-chr16-36654780-2	chr16	36654280	36655280	+	787.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	11297.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69989960-2	chr11	69989460	69990460	+	787.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026017, intron 7 of 7)	intron (NM_026017, intron 7 of 7)	-1410.0	NM_019749	56486.0	Mm.272460	NM_019749	ENSMUSG00000018567	Gabarap	-	gamma-aminobutyric acid receptor associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-53569061-2	chr17	53568561	53569561	+	787.833313	f1_balb.idr|f1_c57bl6.idr	intron (NR_151733, intron 1 of 16)	intron (NR_151733, intron 1 of 16)	2090.0	NR_151733	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-103346284-3	chr4	103345786	103346786	+	787.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025909, intron 7 of 8)	intron (NM_025909, intron 7 of 8)	32440.0	NM_025909	67013.0	Mm.30021	NM_025909	ENSMUSG00000035069	Oma1	2010001O09Rik|MPRP-1|ZMPOMA1	OMA1 zinc metallopeptidase	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr2-6168038-2	chr2	6167538	6168538	+	787.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25213.0	NR_040333	320132.0	Mm.445891	NR_040333	ENSMUSG00000087125	A230108P19Rik	-	RIKEN cDNA A230108P19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58205199-4	chr13	58204678	58205678	+	787.825012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026842, intron 1 of 10)	intron (NM_026842, intron 1 of 10)	10475.0	NM_152234	56085.0	Mm.182053	NM_026842	ENSMUSG00000005312	Ubqln1	1110046H03Rik|1810030E05Rik|AU019746|C77538|D13Ertd372e|Da41|Dsk2|Plic-1|Plic1|Xdrp1	ubiquilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70815858-4	chr14	70815353	70816353	+	787.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37080.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	6.5	27.0	44.0	18.0	22.0	20.5
Merged-chr16-92336566-3	chr16	92336063	92337063	+	787.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15122.0	NM_029252	75328.0	Mm.72970	NM_029252	ENSMUSG00000051728	4930563D23Rik	-	RIKEN cDNA 4930563D23 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-74312044-3	chr5	74311537	74312537	+	787.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114660, intron 5 of 8)	intron (NM_001114660, intron 5 of 8)	116711.0	NM_026878	68939.0	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	3.0	4.0	4.0	9.0	2.5	2.0
Merged-chr13-99438008-3	chr13	99437519	99438519	+	787.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008634, intron 4 of 6)	L3|LINE|CR1	-25193.0	NR_015515	320893.0	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.0	0.0	0.0	6.5	3.0	1.5
Merged-chr2-165779151-3	chr2	165778661	165779661	+	787.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79012.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-104234965-4	chr12	104234484	104235484	+	787.770813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009251, intron 3 of 6)	intron (NM_009251, intron 3 of 6)	-1163.0	NM_001353612	20715.0	Mm.312628	NM_009251		Serpina3g	2A2|AI119734|Spi2-1|Spi2/eb.1|Spi2A|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3G	protein-coding	24.0	81.5	36.0	26.5	65.0	36.5
Merged-chr1-58364091-3	chr1	58363533	58364533	+	787.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008419, intron 34 of 35)	intron (NM_001008419, intron 34 of 35)	-29103.0	NM_025824	66882.0	Mm.21848	NM_025824	ENSMUSG00000051223	Bzw1	1200015E15Rik|mKIAA0005	basic leucine zipper and W2 domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110205055-4	chr7	110204569	110205569	+	787.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-16634.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-58181007-4	chr2	58180496	58181496	+	787.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17022.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115482726-2	chr5	115482139	115483139	+	787.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001167691, exon 2 of 5)	exon (NM_001167691, exon 2 of 5)	1658.0	NM_001167691	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	6.0	2.5	1.0	0.0	0.5	0.0
Merged-chr2-112264167-2	chr2	112263667	112264667	+	787.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2147.0	NM_133649	107723.0	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-149101505-4	chr6	149100955	149101955	+	787.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177192, exon 1 of 21)	5' UTR (NM_177192, exon 1 of 21)	225.0	NM_177192	320560.0	Mm.426874	NM_177192	ENSMUSG00000030313	Dennd5b	9330160C06Rik|AI852444|D030011O10Rik|Gm17524	DENN/MADD domain containing 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26560738-2	chr17	26560238	26561238	+	787.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026170)	promoter-TSS (NM_026170)	-774.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141017936-2	chr4	141017436	141018436	+	787.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_172122, exon 36 of 37)	exon (NM_172122, exon 36 of 37)	7299.0	NM_008546	17150.0	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8913069-6	chr10	8912647	8913647	+	787.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-27077.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32876875-3	chr2	32876364	32877364	+	787.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146119, intron 1 of 13)	intron (NM_146119, intron 1 of 13)	730.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79099374-7	chr3	79098856	79099856	+	787.68573	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099624, intron 3 of 23)	L1_Mus3|LINE|L1	45531.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98849406-3	chr11	98848904	98849904	+	787.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001080925, exon 10 of 15)	exon (NM_001080925, exon 10 of 15)	12619.0	NM_001080925	268480.0	Mm.340766	NM_001080925	ENSMUSG00000038020	Rapgefl1	B230105J10	Rap guanine nucleotide exchange factor (GEF)-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-122849517-4	chr4	122849058	122850058	+	787.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008917, intron 5 of 8)	intron (NM_008917, intron 5 of 8)	13331.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	23.0	54.5	42.0	13.0	8.5	25.5
Merged-chr9-53390395-3	chr9	53389898	53390898	+	787.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212445, intron 2 of 7)	intron (NM_212445, intron 2 of 7)	6375.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59753716-3	chr4	59753229	59754229	+	787.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001015681, exon 4 of 4)	3' UTR (NM_001015681, exon 4 of 4)	30126.0	NM_001013577	66209.0	Mm.51988	NM_001013577	ENSMUSG00000038544	Inip	1110054O05Rik|2610312O17Rik|AA399876|Ssbip1	INTS3 and NABP interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-59055014-3	chr3	59054498	59055498	+	787.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 4 of 43)	intron (NM_177855, intron 4 of 43)	46823.0	NM_173398	229323.0	Mm.123648	NM_173398	ENSMUSG00000050075	Gpr171	A630006E05|F730001G15Rik|H963	G protein-coupled receptor 171	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115602494-3	chr6	115601995	115602995	+	787.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023290, intron 1 of 7)	intron (NM_023290, intron 1 of 7)	557.0	NM_023290	67027.0	Mm.101316	NM_023290	ENSMUSG00000000439	Mkrn2	2610002L04Rik|C81377	makorin, ring finger protein, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63603496-3	chr9	63602975	63603975	+	787.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311098)	promoter-TSS (NM_001311098)	829.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38288552-2	chr15	38288052	38289052	+	787.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11348.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41393641-3	chr10	41393150	41394150	+	787.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56708.0	NM_001277229	268294.0	Mm.258475	NM_153398	ENSMUSG00000019826	Zbtb24	BC055367|Bif1|Bsg1|ZNF450	zinc finger and BTB domain containing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50262214-3	chr11	50261720	50262720	+	787.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 3 of 4)	RSINE1|SINE|B4	-23688.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127229088-4	chr10	127228585	127229585	+	787.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008447)	TTS (NM_008447)	-17463.0	NM_001359280	117150.0	Mm.22682	NM_054097	ENSMUSG00000025417	Pip4k2c	Pip5k2c	phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-128723207-4	chr1	128722730	128723730	+	787.604187	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130931.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	97.5	210.5	127.5	58.5	159.5	125.5
Merged-chr15-59651982-7	chr15	59651497	59652497	+	787.571411	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144549, intron 2 of 2)	intron (NM_144549, intron 2 of 2)	3343.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84773097-3	chr3	84772595	84773595	+	787.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42482.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.0	14.5	11.0	6.5	26.0	6.5
Merged-chr7-97944153-3	chr7	97943640	97944640	+	787.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177696, intron 1 of 17)	MTA_Mm|LTR|ERVL-MaLR	24182.0	NM_177696	233537.0	Mm.375772	NM_177696	ENSMUSG00000035582	Gdpd4	4921513O04	glycerophosphodiester phosphodiesterase domain containing 4	protein-coding	7.0	3.5	3.5	1.5	6.5	4.5
Merged-chr18-4922830-4	chr18	4922330	4923330	+	787.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110344.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5102624-3	chr11	5102210	5103210	+	787.516663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177370, intron 4 of 8)	intron (NM_177370, intron 4 of 8)	2545.0	NM_001290493	279766.0	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	1.0	2.0	3.5	0.5	0.0	6.0
Merged-chr7-4145475-2	chr7	4144975	4145975	+	787.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172736, exon 15 of 15)	exon (NM_172736, exon 15 of 15)	4397.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35051182-4	chr12	35050695	35051695	+	787.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	4006.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	95.0	233.5	161.5	53.5	148.5	114.0
Merged-chr16-95133109-2	chr16	95132609	95133609	+	787.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124449.0	NM_001271693	16516.0	Mm.272239	NM_019664	ENSMUSG00000062609	Kcnj15	4930414N08Rik|AI182284|AI267127|IRKK|Kir4.2	potassium inwardly-rectifying channel, subfamily J, member 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170895389-2	chr1	170894889	170895889	+	787.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9849.0	NM_023173	80915.0	Mm.34365	NM_023173	ENSMUSG00000026659	Dusp12	1190004O14Rik|AA027408|AW049275|ESTM36|LMW-DSP4|T-DSP4|VH1|mVH1	dual specificity phosphatase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-18054438-2	chr3	18053938	18054938	+	787.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021560, exon 1 of 1)	5' UTR (NM_021560, exon 1 of 1)	113.0	NM_021560	59058.0	Mm.149938	NM_021560	ENSMUSG00000025128	Bhlhe22	Beta3|Beta3a|Bhlhb5	basic helix-loop-helix family, member e22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55850820-3	chr19	55850346	55851346	+	787.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-44475.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191559968-4	chr1	191559477	191560477	+	787.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305233, intron 8 of 15)	intron (NM_001305233, intron 8 of 15)	15567.0	NM_029766	76843.0	Mm.189102	NM_029766	ENSMUSG00000037474	Dtl	2810047L02Rik|5730564G15Rik|L2dtl|Ramp	denticleless E3 ubiquitin protein ligase	protein-coding	8.0	0.0	2.5	7.0	0.0	2.0
Merged-chr15-97943716-2	chr15	97943216	97944216	+	787.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20513.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80809826-2	chr7	80809326	80810326	+	787.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6495.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52490609-2	chr6	52490109	52491109	+	787.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1842.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180736759-4	chr1	180736252	180737252	+	787.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133225, exon 4 of 8)	exon (NM_133225, exon 4 of 8)	10709.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28419809-3	chr17	28419285	28420285	+	787.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 5 of 10)	intron (NM_010220, intron 5 of 10)	-54569.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-17949836-2	chr13	17949336	17950336	+	787.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-5619.0	NM_019491	56044.0	Mm.27348	NM_019491	ENSMUSG00000008859	Rala	3010001O15Rik|AW322615|Ral|Rasl1	v-ral simian leukemia viral oncogene A (ras related)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-40220417-2	chr18	40219917	40220917	+	787.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1018.0	NM_023311	67180.0	Mm.270382	NM_023311	ENSMUSG00000024487	Yipf5	2610311I19Rik|AA408236|Yip1a	Yip1 domain family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132384880-2	chr1	132384423	132385423	+	787.5	f0_c57.idr|f1_c57bl6.idr	intron (NM_178874, intron 1 of 4)	intron (NM_178874, intron 1 of 4)	5395.0	NM_001311107	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	3.0	2.0	4.0	3.5	2.0	1.0
Merged-chr4-150603610-3	chr4	150603135	150604135	+	787.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	48539.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.0	0.0	10.0	0.0	1.5	5.5
Merged-chr12-102396527-2	chr12	102396027	102397027	+	787.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 11 of 13)	intron (NM_011175, intron 11 of 13)	43286.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34003714-2	chr17	34003214	34004214	+	787.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3367.0	NM_001347346	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	0.5	0.0	3.0	0.0	0.0	0.0
Merged-chr8-85505831-2	chr8	85505331	85506331	+	787.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173866, intron 4 of 11)	intron (NM_173866, intron 4 of 11)	13214.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120154411-2	chr1	120153911	120154911	+	787.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028439, intron 2 of 5)	B3|SINE|B2	33224.0	NM_001172074	73103.0	Mm.271602	NM_028439	ENSMUSG00000026388	3110009E18Rik	-	RIKEN cDNA 3110009E18 gene	protein-coding	0.0	0.0	0.5	0.0	0.5	0.5
Merged-chr6-114902343-2	chr6	114901843	114902843	+	787.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	19478.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6560989-2	chr15	6560489	6561489	+	787.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie1a|DNA|hAT-Charlie	-18858.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-119481526-2	chr6	119481026	119482026	+	787.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133940, exon 1 of 1)	3' UTR (NM_133940, exon 1 of 1)	1858.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36725276-4	chr16	36724787	36725787	+	787.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 7 of 7)	intron (NM_001285788, intron 7 of 7)	31309.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100664502-2	chr7	100664002	100665002	+	787.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2108.0	NM_001163182	27276.0	Mm.491216	NM_013746	ENSMUSG00000030701	Plekhb1	AI315628|PHR1|Phret1|evt-1	pleckstrin homology domain containing, family B (evectins) member 1	protein-coding	0.0	1.5	2.0	0.0	2.0	6.5
Merged-chr14-21029280-2	chr14	21028759	21029759	+	787.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009502, exon 19 of 21)	exon (NM_009502, exon 19 of 21)	23183.0	NM_018829	55946.0	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	0.0	0.0	2.0	0.0	0.0	2.0
Merged-chr2-91486645-2	chr2	91486145	91487145	+	787.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 18 of 37)	B3A|SINE|B2	29114.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	2.0	9.5	5.0	16.5	4.5	4.0
Merged-chr1-74432426-2	chr1	74431926	74432926	+	787.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009509, exon 19 of 20)	exon (NM_009509, exon 19 of 20)	23042.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25103998-2	chr12	25103498	25104498	+	787.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7906.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	19.5	13.0	6.5	13.0	12.0	4.0
Merged-chr17-35908597-2	chr17	35908097	35909097	+	787.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001142745, exon 6 of 11)	exon (NM_001142745, exon 6 of 11)	1471.0	NM_001142745	73242.0	Mm.273155	NM_028476	ENSMUSG00000024426	Atat1	0610011P08Rik|2610008K08Rik|2610110G12Rik|3110080J08Rik|Mec17|TAT	alpha tubulin acetyltransferase 1	protein-coding	0.0	1.0	0.0	2.5	0.0	1.5
Merged-chr2-78060272-2	chr2	78059767	78060767	+	787.5	f0_balb.idr|f0_c57.idr	intron (NR_108098, intron 1 of 6)	intron (NR_108098, intron 1 of 6)	9090.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75193408-2	chr14	75192908	75193908	+	787.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	-48879.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166575112-4	chr2	166574584	166575584	+	787.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 32 of 39)	intron (NM_177782, intron 32 of 39)	10562.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-121260742-2	chr6	121260242	121261242	+	787.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011909, intron 4 of 10)	intron (NM_011909, intron 4 of 10)	14836.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr6-134016435-4	chr6	134015909	134016909	+	787.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-19291.0	NM_001303102	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	23.0	52.0	19.5	53.0	49.0	31.0
Merged-chr11-102294755-2	chr11	102294255	102295255	+	787.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001098836, intron 2 of 12)	intron (NM_001098836, intron 2 of 12)	1874.0	NM_001098836	217218.0	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4034558-2	chr19	4034058	4035058	+	787.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013541)	TTS (NM_013541)	3354.0	NM_013541	14870.0	Mm.299292	NM_013541	ENSMUSG00000060803	Gstp1	GstpiB	glutathione S-transferase, pi 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58727948-2	chr1	58727448	58728448	+	787.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 2 of 8)	intron (NM_001355056, intron 2 of 8)	-2604.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50843457-1	chr14	50842957	50843957	+	787.5	f1_c57bl6.idr	intron (NM_009351, intron 27 of 54)	intron (NM_009351, intron 27 of 54)	27097.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	27.0	57.0	53.5	4.0	25.5	27.5
Merged-chr11-60219835-4	chr11	60219349	60220349	+	787.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358315, intron 1 of 18)	intron (NM_001358315, intron 1 of 18)	778.0	NM_011480	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53350764-4	chr4	53350274	53351274	+	787.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80542.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44824478-3	chr7	44823891	44824891	+	787.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171024, intron 1 of 8)	RLTR20B3|LTR|ERVK	-7733.0	NR_033136	107503.0	Mm.389890	NM_030693	ENSMUSG00000038539	Atf5	AFTA|Atf7|Atfx|ODA-10	activating transcription factor 5	protein-coding	1.0	1.0	9.0	6.5	8.0	10.5
Merged-chr7-80629540-4	chr7	80629003	80630003	+	787.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173863, intron 3 of 14)	intron (NM_173863, intron 3 of 14)	-6514.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	4.0	11.5	14.5	16.0	21.5	6.0
Merged-chr7-16011852-2	chr7	16011352	16012352	+	787.416687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12357.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	1.5	3.5	8.5	0.0	1.5	3.5
Merged-chr12-17689184-2	chr12	17688684	17689684	+	787.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	-1625.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0.0	0.0	0.0	0.0	4.0	1.0
Merged-chr18-62090392-3	chr18	62089889	62090889	+	787.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89592.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	1.5	13.0	12.0	5.5	19.5	12.5
Merged-chr12-83771072-3	chr12	83770572	83771572	+	787.388855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205343, intron 3 of 27)	intron (NM_001205343, intron 3 of 27)	7438.0	NM_130887	170721.0	Mm.133443	NM_130887	ENSMUSG00000021223	Papln	E030033C16Rik	papilin, proteoglycan-like sulfated glycoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20331658-4	chr11	20331154	20332154	+	787.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018861, intron 1 of 7)	intron (NM_018861, intron 1 of 7)	1059.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-46885520-2	chr14	46885020	46886020	+	787.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	2555.0	NM_001037221	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	2.0	9.0	7.5	0.0	1.0	1.0
Merged-chr13-23732516-3	chr13	23731993	23732993	+	787.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6314.0	NM_015786	50708.0	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	12.5	13.5	21.5	20.0	17.0	1.5
Merged-chr12-84611789-2	chr12	84611289	84612289	+	787.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_008992, intron 6 of 18)	intron (NM_008992, intron 6 of 18)	5677.0	NM_008992	19300.0	Mm.229109	NM_008992	ENSMUSG00000021240	Abcd4	P69r|P70R|Pxmp1l	ATP-binding cassette, sub-family D (ALD), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153704446-3	chr2	153703936	153704936	+	787.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-36851.0	NM_007896	13589.0	Mm.143877	NM_007896	ENSMUSG00000027479	Mapre1	5530600P05Rik|AI462499|AI504412|AW260097|BIM1p|D2Ertd459e|Eb1	microtubule-associated protein, RP/EB family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108576902-1	chr6	108576402	108577402	+	787.333313	f0_balb.idr	TTS (NR_104577)	TTS (NR_104577)	46265.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	3.0	1.5	0.0	9.5	14.0	10.5
Merged-chr10-120365699-3	chr10	120365226	120366226	+	787.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010441, intron 4 of 4)	intron (NM_010441, intron 4 of 4)	-23797.0	NR_040626	320626.0	Mm.446091	NR_040626	ENSMUSG00000090191	9230105E05Rik	-	RIKEN cDNA 9230105E05 gene	ncRNA	8.5	9.5	7.5	3.5	4.5	1.5
Merged-chr18-5162686-4	chr18	5162194	5163194	+	787.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_153824)	TTS (NR_153824)	3037.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-22771554-4	chr2	22771050	22772050	+	787.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2777.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34754707-4	chr6	34754238	34755238	+	787.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145575, intron 4 of 11)	intron (NM_145575, intron 4 of 11)	-25694.0	NM_001289658	76223.0	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-131875432-3	chr4	131874917	131875917	+	787.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020587, intron 1 of 5)	intron (NM_020587, intron 1 of 5)	1778.0	NM_020587	57317.0	Mm.2478	NM_020587	ENSMUSG00000028911	Srsf4	5730499P16Rik|AW550192|MNCb-2616|SRp75|Sfrs4	serine/arginine-rich splicing factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131345596-1	chr1	131345096	131346096	+	787.25	f0_balb.idr	intron (NM_001081011, intron 9 of 22)	intron (NM_001081011, intron 9 of 22)	-66033.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-79971456-4	chr17	79970958	79971958	+	787.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME3E|LINE|L1	-75335.0	NM_001286647	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	0.0	3.0	3.0	1.0	0.0	0.0
Merged-chr15-86200446-2	chr15	86199946	86200946	+	787.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-14013.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100282829-2	chr11	100282329	100283329	+	787.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12958.0	NM_212483	68239.0	Mm.158190	NM_212483	ENSMUSG00000053654	Krt42	2410039E07Rik|K17n|Ka22|ecat6	keratin 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40384055-4	chr10	40383555	40384555	+	787.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291816, intron 1 of 11)	intron (NM_001291816, intron 1 of 11)	34747.0	NM_001291816	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143769746-3	chr7	143769257	143770257	+	787.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2764.0	NM_203492	381974.0	Mm.297839	NM_203492	ENSMUSG00000050276	Mrgprg	Gm1098|Mrgg	MAS-related GPR, member G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-51432802-2	chr6	51432302	51433302	+	787.25	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010903, exon 1 of 4)	5' UTR (NM_010903, exon 1 of 4)	133.0	NM_010903	18025.0	Mm.42138	NM_010903	ENSMUSG00000029832	Nfe2l3	Nrf3	nuclear factor, erythroid derived 2, like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80876111-4	chr10	80875527	80876527	+	787.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3789.0	NM_001081688	432478.0	Mm.235302	NM_001081688	ENSMUSG00000059406	Tmprss9	Serase-1B	transmembrane protease, serine 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131994993-2	chr2	131994493	131995493	+	787.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175445, exon 11 of 11)	3' UTR (NM_175445, exon 11 of 11)	34995.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84768331-2	chr12	84767831	84768831	+	787.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 1 of 3)	MLTR14|LTR|ERV1	4781.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-48297260-2	chr7	48296760	48297760	+	787.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-91266.0	NM_207539	404240.0	Mm.357942	NM_207539	ENSMUSG00000050870	Mrgprb8	MrgB8	MAS-related GPR, member B8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3754474-4	chr8	3753999	3754999	+	787.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	SSU-rRNA_Hsa|rRNA|rRNA	-5515.0	NM_133238	170786.0	Mm.32510	NM_133238	ENSMUSG00000031494	Cd209a	CD209|CDSIGN|CIRE|DC-SIGN|DC-SIGN1|Dcsign|SIGN-R1|SIGNR5	CD209a antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43804344-4	chr1	43803848	43804848	+	787.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026430, intron 4 of 14)	Lx8|LINE|L1	23360.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38890430-3	chr18	38889920	38890920	+	787.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010197, intron 1 of 3)	intron (NM_010197, intron 1 of 3)	-2036.0	NM_001033789	545253.0	Mm.244585	NM_001033789	ENSMUSG00000036452	Gm5820	EG545253	predicted gene 5820	protein-coding	0.0	2.0	1.5	5.0	4.5	0.0
Merged-chr11-75538119-3	chr11	75537660	75538660	+	787.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 2 of 13)	intron (NM_001199284, intron 2 of 13)	6048.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-99339397-3	chr13	99338887	99339887	+	787.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026873, intron 3 of 9)	intron (NM_026873, intron 3 of 9)	5291.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	5.5	30.5	12.0	11.0	25.5	9.0
Merged-chr3-157629964-3	chr3	157629470	157630470	+	787.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011196, intron 2 of 2)	MLT1J|LTR|ERVL-MaLR	63078.0	NM_011196	19218.0	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-52374463-3	chr11	52373943	52374943	+	787.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011694, intron 2 of 8)	intron (NM_011694, intron 2 of 8)	13581.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94639460-3	chr10	94638958	94639958	+	787.211121	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	49155.0	NR_015524	67723.0	Mm.116284	NR_015524		Cep83os	4932415G12Rik|Ccdc41os1	centrosomal protein 83, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99365270-2	chr7	99364770	99365770	+	787.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12031.0	NM_001111044	12406.0	Mm.22708	NM_009825	ENSMUSG00000070436	Serpinh1	BERF-1|Cbp1|Cbp2|Hsp47|J6|Serpinh2|gp46	serine (or cysteine) peptidase inhibitor, clade H, member 1	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr5-66279821-4	chr5	66279325	66280325	+	787.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302833, intron 7 of 12)	L1MEg|LINE|L1	18984.0	NM_027602	70918.0	Mm.23166	NM_027602	ENSMUSG00000029206	Nsun7	4921525L17Rik	NOL1/NOP2/Sun domain family, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55791004-3	chr19	55790495	55791495	+	787.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	49185.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	8.0	10.5	13.0	8.0	7.0	13.0
Merged-chr12-86768075-3	chr12	86767603	86768603	+	787.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33734.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21312095-3	chr14	21311614	21312614	+	787.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134079, intron 6 of 10)	intron (NM_134079, intron 6 of 10)	-187656.0	NM_001205241	54169.0	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-103494644-3	chr12	103494128	103495128	+	787.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-37405.0	NM_145449	217845.0	Mm.298416	NM_145449	ENSMUSG00000021208	Ifi27l2b	1810023F06Rik|ISG12(b2)	interferon, alpha-inducible protein 27 like 2B	protein-coding	0.0	1.5	0.0	0.0	1.5	0.0
Merged-chr3-96239618-3	chr3	96239116	96240116	+	787.166626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178216)	promoter-TSS (NM_178216)	-474.0	NM_178216	15077.0	Mm.422680	NM_178216	ENSMUSG00000093769	Hist2h3c1	BE691662|H3-615|H3f2|Hist2h3ca1	histone cluster 2, H3c1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8999445-2	chr3	8998943	8999943	+	787.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	4761.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	12.0	22.0	20.0	15.5	27.5	17.5
Merged-chr11-54998908-2	chr11	54998408	54999408	+	787.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013472, intron 13 of 25)	intron (NM_013472, intron 13 of 25)	34563.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27357351-2	chr14	27356851	27357851	+	787.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	-4038.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121577945-4	chr8	121577431	121578431	+	787.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133765, intron 1 of 8)	intron (NM_133765, intron 1 of 8)	875.0	NM_133765	76454.0	Mm.24829	NM_133765	ENSMUSG00000052934	Fbxo31	1110003O08Rik|2310046N15Rik|Fbx14|Fbxo14	F-box protein 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-72850035-4	chr2	72849560	72850560	+	787.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36343.0	NR_102349	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23570566-4	chr13	23570036	23571036	+	787.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178196)	promoter-TSS (NM_178196)	684.0	NM_178187	319166.0	Mm.261665	NM_178187	ENSMUSG00000069272	Hist1h2ae	1190022L06	histone cluster 1, H2ae	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86896291-2	chr12	86895791	86896791	+	787.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11477.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-77049674-3	chr13	77049189	77050189	+	787.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134071, intron 17 of 20)	intron (NM_134071, intron 17 of 20)	85779.0	NM_134071	105377.0	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding	7.0	10.0	27.0	32.5	45.5	36.0
Merged-chr7-101653875-3	chr7	101653401	101654401	+	787.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9867.0	NM_009191	20480.0	Mm.3990	NM_009191	ENSMUSG00000001829	Clpb	AL118244|Skd3	ClpB caseinolytic peptidase B	protein-coding	8.5	5.5	2.0	2.5	6.5	8.5
Merged-chr15-100449724-5	chr15	100449285	100450285	+	787.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19226.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	50.5	88.5	101.5	62.5	53.0	53.5
Merged-chr1-191251242-2	chr1	191250735	191251735	+	787.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26781.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	0.0	5.0	0.0	0.0	2.5	2.5
Merged-chr8-58212464-4	chr8	58211952	58212952	+	787.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175032, intron 4 of 11)	ORR1E|LTR|ERVL-MaLR	488344.0	NM_001177534	100271928.0	Mm.484123	NM_001177534		Gm15881	-	predicted gene 15881	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84217159-3	chr12	84216647	84217647	+	787.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	1734.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43674221-2	chr7	43673721	43674721	+	787.0625	f1_balb.idr|f1_c57bl6.idr	intron (NM_145582, intron 1 of 2)	L2|LINE|L2	2190.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-117802240-3	chr6	117801737	117802737	+	787.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38944.0	NM_001346649	232337.0	Mm.290847	NM_177684	ENSMUSG00000059689	Zfp637	AI646709|BC021601|Znf32	zinc finger protein 637	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146422015-4	chr3	146421569	146422569	+	787.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253770, intron 4 of 13)	L1M2|LINE|L1	17427.0	NM_001355661	99167.0	Mm.200783	NM_138744	ENSMUSG00000036825	Ssx2ip	AU014939|AU042321|Adip	synovial sarcoma, X 2 interacting protein	protein-coding	2.0	2.0	2.0	3.5	14.5	11.0
Merged-chr4-6514971-4	chr4	6514474	6515474	+	787.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60703.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97425017-4	chr7	97424533	97425533	+	787.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7483.0	NM_009381	21835.0	Mm.28585	NM_009381	ENSMUSG00000035686	Thrsp	S14|SPOT14	thyroid hormone responsive	protein-coding	2.5	1.0	9.0	12.0	12.5	0.0
Merged-chr18-60625403-5	chr18	60624873	60625873	+	787.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1068.0	NM_177340	104027.0	Mm.252321	NM_177340	ENSMUSG00000043079	Synpo	9030217H17Rik|9130229N11|9330140I15Rik|AW046661	synaptopodin	protein-coding	5.0	15.0	6.5	1.0	1.0	0.5
Merged-chr7-80838482-2	chr7	80837982	80838982	+	787.025024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23626.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	14.0	38.0	32.0	18.0	27.0	25.0
Merged-chr11-119374561-2	chr11	119374061	119375061	+	787.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178743, intron 11 of 16)	intron (NM_178743, intron 11 of 16)	-15911.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	18.5	35.0	9.5	2.5	15.5	17.5
Merged-chr1-60425910-2	chr1	60425410	60426410	+	787.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198127, intron 1 of 8)	URR1B|DNA|hAT-Charlie	16291.0	NM_001198570	329165.0	Mm.212066	NM_198127	ENSMUSG00000026782	Abi2	8430425M24Rik|AI839867|C130078H13	abl-interactor 2	protein-coding	0.0	2.5	1.0	0.0	2.5	1.0
Merged-chr9-118811443-2	chr9	118810943	118811943	+	787.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 4 of 13)	intron (NM_001113514, intron 4 of 13)	99751.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.5	0.0	0.0	0.0	0.0	2.0
Merged-chr2-71212524-2	chr2	71212024	71213024	+	787.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347173, intron 1 of 17)	intron (NM_001347173, intron 1 of 17)	578.0	NM_010064	13427.0	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145272223-2	chr7	145271801	145272801	+	787.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_132642, exon 7 of 24)	non-coding (NR_132642, exon 7 of 24)	11710.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	10.5	6.5	2.5	6.0	1.0	9.5
Merged-chr7-116410070-2	chr7	116409570	116410570	+	787.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011083, intron 2 of 32)	intron (NM_011083, intron 2 of 32)	33388.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27175416-2	chr3	27174916	27175916	+	787.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-7588.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38741368-2	chr16	38740868	38741868	+	787.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285793)	promoter-TSS (NM_001285793)	-891.0	NR_152434	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110976909-2	chr12	110976409	110977409	+	787.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001361917, exon 3 of 3)	exon (NM_001361917, exon 3 of 3)	1709.0	NM_001361917	74251.0	Mm.250989	NM_175207	ENSMUSG00000037904	Ankrd9	2500003O20Rik	ankyrin repeat domain 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-181395391-2	chr1	181394891	181395891	+	787.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160212, intron 1 of 4)	ORR1F|LTR|ERVL-MaLR	42763.0	NM_001160211	72978.0	Mm.338083	NM_028408	ENSMUSG00000026514	Cnih3	2900075G08Rik|CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134710167-2	chr4	134709667	134710667	+	787.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5877.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27933658-1	chr17	27933158	27934158	+	787.0	f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	B1_Mur4|SINE|Alu	24352.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	8.0	10.0	8.0	14.5	15.0	6.0
Merged-chr8-40023644-4	chr8	40023139	40024139	+	787.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	263314.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	8.5	10.5	15.0	17.5	12.0	4.5
Merged-chr10-89708965-1	chr10	89708465	89709465	+	787.0	f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	22602.0	NR_130956	69002.0	Mm.293947	NR_130956	ENSMUSG00000097383	1500026H17Rik	-	RIKEN cDNA 1500026H17 gene	ncRNA	11.5	17.0	12.0	9.0	4.0	2.0
Merged-chr10-37262645-4	chr10	37262189	37263189	+	787.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123763.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120481034-2	chr6	120480534	120481534	+	787.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008359, exon 13 of 13)	exon (NM_008359, exon 13 of 13)	12773.0	NM_033567	94047.0	Mm.23088	NM_033567	ENSMUSG00000094626	Tmem121b	AW048664|Cecr6	transmembrane protein 121B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135429157-2	chr3	135428657	135429657	+	787.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-5724.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	0.0	0.0	0.5	7.5	2.5	0.5
Merged-chr18-38419703-2	chr18	38419211	38420211	+	787.0	f0_balb.idr|f0_c57.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	804.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-14164130-3	chr16	14163636	14164636	+	787.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114085, intron 1 of 8)	intron (NM_001114085, intron 1 of 8)	861.0	NM_001114085	67203.0	Mm.24105	NM_023317	ENSMUSG00000022678	Nde1	2810027M15Rik|AU042936|AW822251|Nude|mNudE	nudE neurodevelopment protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-3766053-1	chr13	3765553	3766553	+	787.0	f0_balb.idr	Intergenic	Intergenic	38265.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	0.0	0.0	0.5	0.5	21.0	1.5
Merged-chr11-50215568-2	chr11	50215068	50216068	+	787.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4748.0	NM_011018	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58160466-2	chr13	58159966	58160966	+	787.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048060, intron 3 of 3)	intron (NM_001048060, intron 3 of 3)	2817.0	NM_198004	75731.0	Mm.293919	NM_198004	ENSMUSG00000050002	Idnk	5133401N09Rik	idnK gluconokinase homolog (E. coli)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119447763-2	chr8	119447263	119448263	+	787.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054095, intron 1 of 12)	CpG	1044.0	NM_054095	117148.0	Mm.356184	NM_054095	ENSMUSG00000031837	Necab2	Efcbp2	N-terminal EF-hand calcium binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59881755-2	chr2	59881255	59882255	+	787.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159636, intron 1 of 10)	intron (NM_001159636, intron 1 of 10)	851.0	NM_001159636	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5731391-2	chr17	5730891	5731891	+	787.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 7 of 8)	intron (NM_146073, intron 7 of 8)	-67266.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41772489-1	chr19	41771989	41772989	+	787.0	f1_c57bl6.idr	intron (NM_001163495, intron 10 of 10)	intron (NM_001163495, intron 10 of 10)	25528.0	NR_040320	100502871.0	Mm.394485	NR_040320		Gm19424	-	predicted gene, 19424	ncRNA	101.5	170.0	152.5	16.5	12.0	19.0
Merged-chr16-45122699-1	chr16	45122199	45123199	+	787.0	f0_balb.idr	intron (NM_026439, intron 5 of 7)	intron (NM_026439, intron 5 of 7)	28688.0	NM_026439	67896.0	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	6.5	3.0	0.0	1.0	2.5	3.0
Merged-chr12-100065754-2	chr12	100065254	100066254	+	787.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-46577.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76193403-4	chr14	76192879	76193879	+	787.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-58083.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139482041-2	chr5	139481541	139482541	+	787.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001159908, exon 3 of 7)	exon (NM_001159908, exon 3 of 7)	2450.0	NM_133349	100494.0	Mm.24521	NM_133349	ENSMUSG00000053581	Zfand2a	AA407930|AU016206|Airap	zinc finger, AN1-type domain 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9018006-2	chr19	9017506	9018506	+	787.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009643, exon 5 of 5)	exon (NM_009643, exon 5 of 5)	28722.0	NM_001286518	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98680291-2	chr11	98679791	98680791	+	787.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2263.0	NM_009439	22123.0	Mm.12194	NM_009439	ENSMUSG00000017221	Psmd3	AI255837|AntP91a|D11Bwg1349e|Psd3|Tstap91a	proteasome (prosome, macropain) 26S subunit, non-ATPase, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191311195-1	chr1	191310695	191311695	+	787.0	f1_c57bl6.idr	intron (NM_025424, intron 2 of 3)	intron (NM_025424, intron 2 of 3)	6923.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	2.0	0.0	4.0	3.0	0.0	1.0
Merged-chr17-35261927-2	chr17	35261474	35262474	+	787.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1120.0	NM_010380	14964.0	Mm.439675	NM_010380	ENSMUSG00000073411	H2-D1	H-2D|H2-D	histocompatibility 2, D region locus 1	protein-coding	14.0	50.5	12.5	3.0	17.5	17.5
Merged-chr17-35741439-2	chr17	35740939	35741939	+	787.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-31011.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-66956967-2	chr10	66956467	66957467	+	787.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-36583.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34094128-1	chr17	34093628	34094628	+	787.0	f1_balb.idr	intron (NM_008206, intron 2 of 4)	intron (NM_008206, intron 2 of 4)	1181.0	NR_046183	414076.0	Mm.473092	NR_046183	ENSMUSG00000098197	BC051537	-	cDNA sequence BC051537	ncRNA	1.0	1.0	0.0	0.0	0.0	0.0
Merged-chr19-61052613-2	chr19	61052113	61053113	+	787.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 4 of 15)	intron (NM_018869, intron 4 of 15)	88227.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	8.5	32.5	17.0	40.5	27.5	24.0
Merged-chr16-10565685-3	chr16	10565182	10566182	+	787.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177562, intron 3 of 22)	intron (NM_177562, intron 3 of 22)	20343.0	NM_001204229	74374.0	Mm.159176	NM_177562	ENSMUSG00000068663	Clec16a	4932416N17Rik|curt|mKIAA0350	C-type lectin domain family 16, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-86820890-2	chr8	86820390	86821390	+	787.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64368.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0.0	6.0	0.0	1.5	0.0	1.0
Merged-chr7-99917617-4	chr7	99917113	99918113	+	787.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001164258, exon 19 of 19)	exon (NM_001164258, exon 19 of 19)	58395.0	NM_001164258	446101.0	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34290291-3	chr6	34289793	34290793	+	787.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27150.0	NR_037965	626009.0	Mm.451	NR_028277		Gm6644	Akr1b3p|EG626009	Akr1b3 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125663601-2	chr8	125663101	125664101	+	787.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6217.0	NM_028908	74393.0	Mm.41709	NM_028908	ENSMUSG00000050930	Map10	4933403G14Rik|AI835009|mKIAA1383	microtubule-associated protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125448841-2	chr6	125448330	125449330	+	787.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	45930.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	4.0	15.0	5.0	0.0	13.5	10.5
Merged-chr7-19230339-2	chr7	19229839	19230839	+	787.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207525, intron 1 of 1)	intron (NM_207525, intron 1 of 1)	1950.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25716977-2	chr7	25716477	25717477	+	787.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028771, intron 1 of 4)	B3|SINE|B2	2076.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125571223-2	chr8	125570723	125571723	+	787.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1360.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	0.0	0.0	8.5	0.0	1.0	8.0
Merged-chr11-49157628-3	chr11	49157127	49158127	+	787.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2389.0	NM_146276	258273.0	Mm.377407	NM_146276	ENSMUSG00000048378	Olfr1394	MOR280-1	olfactory receptor 1394	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4876247-2	chr16	4875747	4876747	+	787.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145359, intron 2 of 2)	intron (NM_145359, intron 2 of 2)	3604.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-38055459-2	chr19	38054959	38055959	+	787.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028760, intron 1 of 9)	intron (NM_028760, intron 1 of 9)	418.0	NM_001164362	74107.0	Mm.9916	NM_028293	ENSMUSG00000024989	Cep55	1200008O12Rik|2700032M20Rik	centrosomal protein 55	protein-coding	21.0	52.0	33.5	15.5	36.0	33.0
Merged-chr5-31084094-1	chr5	31083594	31084594	+	787.0	f1_c57bl6.idr	Intergenic	Intergenic	9433.0	NM_011773	22784.0	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	2.5	3.0	0.0	1.0	3.0	0.5
Merged-chr16-52470389-1	chr16	52469889	52470889	+	787.0	f0_balb.idr	Intergenic	Intergenic	-17308.0	NM_001331110	11658.0	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34421423-2	chr7	34420923	34421923	+	787.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-31718.0	NM_025948	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22300166-4	chr16	22299671	22300671	+	787.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5183.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19691470-1	chr10	19690970	19691970	+	787.0	f0_balb.idr	Intergenic	Intergenic	-21117.0	NM_172786	237313.0	Mm.234667	NM_172786	ENSMUSG00000020007	Il20ra	E230031K19	interleukin 20 receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-123932402-1	chr1	123931902	123932902	+	787.0	f0_balb.idr	intron (NM_199021, intron 1 of 25)	(TC)n|Simple_repeat|Simple_repeat	113157.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34642854-5	chr17	34642303	34643303	+	786.991638	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2080.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	8.5	16.0	12.5	10.0	21.0	14.0
Merged-chr10-127617017-10	chr10	127616461	127617461	+	786.955017	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 1 of 88)	intron (NM_008512, intron 1 of 88)	4187.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	11.0	19.0	12.0	11.0	18.5	12.5
Merged-chr12-84061100-3	chr12	84060606	84061606	+	786.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001346701)	TTS (NM_001346701)	-8218.0	NM_001347417	217698.0	Mm.484019	NM_145444	ENSMUSG00000042540	Acot5	BC016076|PTE-Ic	acyl-CoA thioesterase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-84343869-4	chr9	84343367	84344367	+	786.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	395086.0	NM_199195	12040.0	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83843001-3	chr7	83842487	83843487	+	786.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41354.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	2.5	8.0	10.0	2.5	15.0	6.5
Merged-chr5-93150769-2	chr5	93150271	93151271	+	786.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001009818, intron 3 of 9)	intron (NM_001009818, intron 3 of 9)	55724.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	1.0	7.5	4.5	1.0	0.5	4.0
Merged-chr6-17284059-4	chr6	17283578	17284578	+	786.891663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016900, intron 2 of 2)	intron (NM_016900, intron 2 of 2)	2893.0	NM_016900	12390.0	Mm.396075	NM_016900	ENSMUSG00000000058	Cav2	AI447843	caveolin 2	protein-coding	3.5	1.0	4.0	0.0	0.0	2.0
Merged-chr2-61712782-3	chr2	61712269	61713269	+	786.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021526, intron 1 of 11)	ORR1B2|LTR|ERVL-MaLR	1075.0	NM_021526	59029.0	Mm.218198	NM_021526	ENSMUSG00000026914	Psmd14	2610312C03Rik|3200001M20Rik|AA986732|Pad1|Poh1|rpm11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76491078-3	chr12	76490593	76491593	+	786.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42119.0	NR_039597	100628604.0		NR_039597	ENSMUSG00000092738	Mir5135	mir-5135|mmu-mir-5135|mu-mir-5135	microRNA 5135	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-67957060-3	chr8	67956580	67957580	+	786.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177698, intron 3 of 14)	intron (NM_177698, intron 3 of 14)	17494.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80067401-3	chr7	80066896	80067896	+	786.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045695, intron 2 of 2)	MER2|DNA|TcMar-Tigger	7861.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	4.5	1.5	2.5	1.5	11.5	2.5
Merged-chr16-91456781-4	chr16	91456240	91457240	+	786.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	-8364.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	14.5	49.5	49.0	33.0	58.5	25.0
Merged-chr13-41068305-4	chr13	41067798	41068798	+	786.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145802, intron 2 of 11)	MLT1B|LTR|ERVL-MaLR	2167.0	NM_008547	17152.0	Mm.8149	NM_008547	ENSMUSG00000021363	Mak	A930010O05Rik	male germ cell-associated kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108083398-4	chr3	108082945	108083945	+	786.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289719, intron 2 of 18)	intron (NM_001289719, intron 2 of 18)	1957.0	NM_001346665	109674.0	Mm.274335	NM_028779	ENSMUSG00000027889	Ampd2	1200014F01Rik|AI552571|Ampd-2|m4521Dajl	adenosine monophosphate deaminase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180434317-4	chr1	180433826	180434826	+	786.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081227, exon 4 of 4)	3' UTR (NM_001081227, exon 4 of 4)	49178.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97840688-3	chr11	97840196	97841196	+	786.866699	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080935)	promoter-TSS (NM_001080935)	-84.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	20.0	33.5	25.0	7.0	3.0	6.0
Merged-chr18-78124125-2	chr18	78123625	78124625	+	786.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028122)	promoter-TSS (NM_028122)	-699.0	NM_028122	108052.0	Mm.33832	NM_028122	ENSMUSG00000059336	Slc14a1	2610507K20Rik|3021401A05Rik|UT-B|Utb1	solute carrier family 14 (urea transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139369068-2	chr5	139368568	139369568	+	786.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029768)	TTS (NR_029768)	677.0	NR_029768	723898.0		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78606388-2	chr15	78605888	78606888	+	786.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028195, intron 4 of 12)	intron (NM_028195, intron 4 of 12)	9341.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	5.5	23.5	18.0	3.0	13.0	13.0
Merged-chr11-72342665-2	chr11	72342165	72343165	+	786.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	18631.0	NM_001282007	21689.0	Mm.42257	NM_011569	ENSMUSG00000020799	Tekt1	MT14	tektin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120377120-2	chr11	120376620	120377620	+	786.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_027980, exon 3 of 10)	exon (NM_027980, exon 3 of 10)	1626.0	NM_027980	71885.0	Mm.274890	NM_027980	ENSMUSG00000025384	Faap100	2310003H01Rik	Fanconi anemia core complex associated protein 100	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80111335-8	chr12	80110895	80111895	+	786.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007564, intron 1 of 1)	intron (NM_007564, intron 1 of 1)	1618.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	14.0	4.5	12.0	7.5	23.0	5.5
Merged-chr17-31059789-2	chr17	31059289	31060289	+	786.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 1 of 14)	intron (NM_009593, intron 1 of 14)	2095.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	65.5	132.5	98.0	31.0	134.0	84.0
Merged-chr11-69575433-3	chr11	69574943	69575943	+	786.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144824, intron 3 of 9)	B3|SINE|B2	3881.0	NM_144824	216853.0	Mm.31586	NM_144824	ENSMUSG00000041346	Wrap53	BC021790|Wdr79	WD repeat containing, antisense to Trp53	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60776244-6	chr11	60775711	60776711	+	786.766663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009410, intron 1 of 18)	intron (NM_009410, intron 1 of 18)	1154.0	NM_009410	21975.0	Mm.10708	NM_009410	ENSMUSG00000002814	Top3a	-	topoisomerase (DNA) III alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147408986-2	chr5	147408501	147409501	+	786.766663	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8512.0	NM_010229	14255.0	Mm.194	NM_010229	ENSMUSG00000042817	Flt3	B230315G04|CD135|Flk-2|Flk2|Flt-3|Ly72|wmfl	FMS-like tyrosine kinase 3	protein-coding	6.0	2.5	11.5	12.5	17.0	9.0
Merged-chr16-91357796-2	chr16	91357296	91358296	+	786.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14987.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116460136-4	chr6	116459650	116460650	+	786.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009662, intron 1 of 13)	intron (NM_009662, intron 1 of 13)	1028.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139470327-2	chr4	139469827	139470827	+	786.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160319, intron 92 of 105)	intron (NM_001160319, intron 92 of 105)	-60221.0	NM_183148	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	0.0	13.0	1.0	2.0	8.5	0.5
Merged-chr9-121984812-2	chr9	121984312	121985312	+	786.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289559, intron 1 of 2)	intron (NM_001289559, intron 1 of 2)	11214.0	NM_001289559	215494.0	Mm.402151	NM_153540	ENSMUSG00000066235	Pomgnt2	Ago61|C85492|Gtdc2	protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2	protein-coding	3.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6436638-2	chr11	6436138	6437138	+	786.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_029938, intron 2 of 4)	B3A|SINE|B2	7805.0	NM_029938	77605.0	Mm.27624	NM_029938	ENSMUSG00000041126	H2afv	C530002L11Rik|H2a.z-2|H2av|Tg(Wnt1-cre)11Rth|Wnt1-Cre|Wnt1::Cre|Wnt1cre	H2A histone family, member V	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25577063-1	chr7	25576563	25577563	+	786.75	f0_balb.idr	Intergenic	Intergenic	-37059.0	NM_001113369	26367.0	Mm.439731	NM_007543	ENSMUSG00000054385	Ceacam2	AI267129|Bgp2|Ceacam2-L	carcinoembryonic antigen-related cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-43383182-4	chr11	43382650	43383650	+	786.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-8689.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152808737-4	chr2	152808274	152809274	+	786.729126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	RLTR31D_MM|LTR|ERVK	19715.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	3.0	25.5	15.0	17.5	38.0	24.0
Merged-chr1-155218267-3	chr1	155217763	155218763	+	786.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59560.0	NM_021433	58244.0	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-38081967-3	chr5	38081440	38082440	+	786.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359398, intron 1 of 9)	intron (NM_001359398, intron 1 of 9)	42710.0	NM_026959	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	13.5	24.0	9.5	8.5	8.0	11.0
Merged-chr18-88932319-1	chr18	88931819	88932819	+	786.666687	f0_balb.idr	Intergenic	Intergenic	-38112.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88254806-2	chr1	88254306	88255306	+	786.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 31 of 41)	intron (NM_001281466, intron 31 of 41)	14602.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22059983-3	chr8	22059479	22060479	+	786.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243161)	promoter-TSS (NM_001243161)	95.0	NM_007511	11979.0	Mm.87854	NM_007511	ENSMUSG00000006567	Atp7b	Atp7a|WND|tx	ATPase, Cu++ transporting, beta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53399307-4	chr15	53398824	53399824	+	786.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-53141.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122763536-1	chr8	122763036	122764036	+	786.666687	f1_balb.idr	promoter-TSS (NR_151739)	promoter-TSS (NR_151739)	-775.0	NR_151739	382036.0	Mm.132367	NR_151739		A530010L16Rik	BC032935|Gm1908|Gm45801	RIKEN cDNA A530010L16 gene	ncRNA	24.5	27.5	20.5	6.5	19.5	22.5
Merged-chr16-30308846-3	chr16	30308321	30309321	+	786.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008148, exon 2 of 2)	exon (NM_008148, exon 2 of 2)	1960.0	NM_008148	14729.0	Mm.3519	NM_008148	ENSMUSG00000047953	Gp5	GPV	glycoprotein 5 (platelet)	protein-coding	0.0	1.5	3.0	3.5	0.0	0.0
Merged-chr10-122804073-4	chr10	122803578	122804578	+	786.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 3 of 9)	intron (NM_001110218, intron 3 of 9)	124763.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0.0	0.5	3.0	3.5	1.5	1.0
Merged-chr4-56086449-4	chr4	56085953	56086953	+	786.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-553978.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-26803998-2	chr10	26803498	26804498	+	786.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	31486.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30522990-2	chr14	30522490	30523490	+	786.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133761, intron 9 of 9)	intron (NM_133761, intron 9 of 9)	-26141.0	NM_009388	21881.0	Mm.290692	NM_009388	ENSMUSG00000021957	Tkt	p68	transketolase	protein-coding	0.0	2.5	0.5	0.0	1.5	0.0
Merged-chr7-45587726-2	chr7	45587226	45588226	+	786.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_009737, exon 7 of 11)	exon (NM_009737, exon 7 of 11)	-12550.0	NR_038165	71661.0	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130802958-4	chr4	130802406	130803406	+	786.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	10369.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	22.5	109.0	51.5	24.5	108.5	52.0
Merged-chr11-8568012-3	chr11	8567485	8568485	+	786.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 4 of 30)	Lx8|LINE|L1	96550.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	4.0	12.5	27.0	18.0	46.5	16.5
Merged-chr2-160213317-3	chr2	160212839	160213839	+	786.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G1|LTR|ERVL-MaLR	114155.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125692956-2	chr6	125692456	125693456	+	786.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_153589, intron 1 of 25)	intron (NM_153589, intron 1 of 25)	2537.0	NM_153589	243634.0	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86769183-4	chr12	86768668	86769668	+	786.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34799.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115172921-4	chr11	115172427	115173427	+	786.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012030, intron 1 of 5)	intron (NM_012030, intron 1 of 5)	9586.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	1.5	3.5	6.0	4.5	16.5	6.0
Merged-chr3-87324046-2	chr3	87323547	87324547	+	786.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-33834.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	15.0	15.0	22.5	2.5	8.5	9.0
Merged-chr2-156185611-2	chr2	156185000	156186000	+	786.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL-int|LTR|ERVL	-5262.0	NM_133242	170791.0	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding	0.0	12.0	3.5	0.0	0.0	3.5
Merged-chr14-120307996-2	chr14	120307496	120308496	+	786.583313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 1 of 8)	intron (NM_001360376, intron 1 of 8)	1544.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-114329954-4	chr9	114329438	114330438	+	786.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007535)	promoter-TSS (NM_007535)	-197.0	NM_007535	12046.0	Mm.378887	NM_007535	ENSMUSG00000053820	Bcl2a1c	A1-c	B cell leukemia/lymphoma 2 related protein A1c	protein-coding	2.5	1.5	2.0	5.5	0.0	6.5
Merged-chr4-133056717-4	chr4	133056176	133057176	+	786.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146155, intron 3 of 6)	intron (NM_146155, intron 3 of 6)	45170.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	9.0	22.5	10.0	6.5	28.0	7.5
Merged-chr11-80072491-3	chr11	80071999	80072999	+	786.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018776, intron 1 of 7)	intron (NM_018776, intron 1 of 7)	8492.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69128327-3	chr3	69127823	69128823	+	786.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1231.0	NM_008467	16649.0	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	26.0	77.0	42.0	26.0	71.0	53.0
Merged-chr16-77644008-3	chr16	77643513	77644513	+	786.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2260.0	NR_029540	723952.0		NR_029540	ENSMUSG00000065472	Mir125b-2	Mirn125b-2|mir-125b-2	microRNA 125b-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165287006-3	chr2	165286521	165287521	+	786.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252575, intron 1 of 9)	intron (NM_001252575, intron 1 of 9)	766.0	NM_001252574	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127256789-2	chr7	127256289	127257289	+	786.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023203)	TTS (NM_023203)	3878.0	NM_023203	66422.0	Mm.29898	NM_023203	ENSMUSG00000042462	Dctpp1	2410015N17Rik|AI854235|RS21-C6	dCTP pyrophosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-23783543-2	chr10	23783043	23784043	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	1908.0	NR_037680	100529074.0	Mm.371846	NR_037680	ENSMUSG00000070063	Snora33	ACA33|MBI-42	small nucleolar RNA, H/ACA box 33	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120496822-4	chr9	120496284	120497284	+	786.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4178.0	NM_026892	68969.0	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	0.0	3.0	2.0	0.0	0.0	1.0
Merged-chr6-5101175-2	chr6	5100675	5101675	+	786.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 7 of 15)	intron (NM_181595, intron 7 of 15)	92771.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66346688-2	chr9	66346188	66347188	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-3762.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21601100-4	chr10	21600607	21601607	+	786.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027968, intron 2 of 2)	intron (NR_027968, intron 2 of 2)	7962.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	0.0	3.5	0.5	0.0	3.5	0.5
Merged-chr17-5769547-2	chr17	5769047	5770047	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29110.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125487205-2	chr8	125486728	125487728	+	786.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 3 of 21)	intron (NM_001357372, intron 3 of 21)	5605.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	0.0	19.5	8.0	0.0	2.0	6.5
Merged-chr15-79446974-2	chr15	79446474	79447474	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4831.0	NM_001359863	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132315162-2	chr7	132314662	132315662	+	786.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028578)	promoter-TSS (NR_028578)	-502.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64149949-2	chr1	64149449	64150449	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-28560.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126472658-2	chr7	126472158	126473158	+	786.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_110346, exon 1 of 10)	non-coding (NR_110346, exon 1 of 10)	436.0	NR_110346	20399.0	Mm.8538	NM_011363	ENSMUSG00000030733	Sh2b1	AI425885|C530001K22Rik|Irip|Psm|SH2-B|SH2-Bb|Sh2bpsm1|mKIAA1299	SH2B adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180893357-2	chr2	180892857	180893857	+	786.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029538)	promoter-TSS (NR_029538)	-683.0	NR_029538	723951.0		NR_029538	ENSMUSG00000065454	Mir124a-3	Mirn124a-3|mir-124-3|mir-124a-3	microRNA 124a-3	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-13262097-2	chr5	13261597	13262597	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-134687.0	NM_001243072	20346.0	Mm.372039	NM_009152	ENSMUSG00000028883	Sema3a	Hsema-I|SEMA1|SemD|Semad|coll-1	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126974704-2	chr8	126974204	126975204	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-3625.0	NM_172762	52202.0	Mm.28199	NM_172762	ENSMUSG00000033931	Rbm34	4930547K05Rik|6330444B11|D8Ertd233e	RNA binding motif protein 34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95765182-2	chr13	95764682	95765682	+	786.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 2 of 35)	intron (NM_027711, intron 2 of 35)	68262.0	NM_010170	14064.0	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	16.0	10.5	4.5	14.5	2.0	0.5
Merged-chr11-9534333-2	chr11	9533833	9534833	+	786.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 46 of 61)	intron (NM_178259, intron 46 of 61)	342391.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49221280-2	chr13	49220780	49221780	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5254.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107918097-2	chr3	107917597	107918597	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	13517.0	NM_001356351	68312.0	Mm.458189	NM_026672	ENSMUSG00000004035	Gstm7	0610005A07Rik|AI894236|Cd203c	glutathione S-transferase, mu 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-66464529-2	chr18	66464029	66465029	+	786.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021451, exon 3 of 3)	3' UTR (NM_021451, exon 3 of 3)	5925.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156522314-2	chr1	156521818	156522818	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB7_1-LTR_MM|LTR|ERVK	-36469.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	0.0	1.0	6.5	1.0	3.5	8.0
Merged-chr5-3540124-2	chr5	3539624	3540624	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-3709.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34593672-2	chr19	34593172	34594172	+	786.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001110517, exon 2 of 2)	exon (NM_001110517, exon 2 of 2)	5755.0	NM_001110517	667373.0	Mm.371956	NM_001101605	ENSMUSG00000079339	Ifit1bl1	Gm14446|Ifit1c	interferon induced protein with tetratricpeptide repeats 1B like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60081250-4	chr10	60080773	60081773	+	786.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026937, intron 9 of 10)	intron (NM_026937, intron 9 of 10)	-24984.0	NM_052994	94214.0	Mm.153429	NM_052994	ENSMUSG00000058297	Spock2	AA407235|Gcap26|mKIAA0275	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85632606-2	chr12	85632106	85633106	+	786.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 3 of 3)	intron (NM_001205053, intron 3 of 3)	32588.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-6157045-2	chr7	6156545	6157545	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1074.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61030229-2	chr9	61029729	61030729	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13160.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70661381-2	chr8	70660881	70661881	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1643.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30628422-2	chr14	30627922	30628922	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2214.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	1.5	1.0	2.0	1.5	1.0	2.0
Merged-chr6-52938089-2	chr6	52937589	52938589	+	786.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 1 of 4)	intron (NM_173406, intron 1 of 4)	-28469.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115326544-4	chr5	115326084	115327084	+	786.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025573)	promoter-TSS (NM_025573)	-593.0	NM_025573	108014.0	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	0.0	5.0	2.0	3.0	3.0	0.0
Merged-chr2-153167931-2	chr2	153167431	153168431	+	786.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	intron (NM_133847, intron 1 of 17)	6630.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167249236-2	chr2	167248736	167249736	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8699.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22551525-2	chr16	22551025	22552025	+	786.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346673, intron 18 of 23)	intron (NM_001346673, intron 18 of 23)	-19341.0	NR_106170	102465887.0		NR_106170	ENSMUSG00000099071	Mir8095	Gm27566|mmu-mir-8095	microRNA 8095	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87405378-2	chr17	87404878	87405878	+	786.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029298, intron 5 of 6)	intron (NM_029298, intron 5 of 6)	22363.0	NM_029298	75467.0	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	11.0	23.0	20.5	0.0	32.0	30.5
Merged-chr9-111571893-2	chr9	111571397	111572397	+	786.5	f0_balb.idr|f1_balb.idr	intron (NM_016853, intron 10 of 10)	ORR1E|LTR|ERVL-MaLR	118451.0	NM_016853	20840.0	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding	7.0	1.5	4.0	1.5	3.5	3.0
Merged-chr5-124092336-2	chr5	124091836	124092836	+	786.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019875, intron 1 of 11)	intron (NM_019875, intron 1 of 11)	3462.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46145067-2	chr8	46144567	46145567	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-18584.0	NM_025747	66756.0	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430	cilia and flagella associated protein 97	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117259878-2	chr8	117259378	117260378	+	786.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	2859.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-93954373-2	chr11	93953873	93954873	+	786.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077529, intron 1 of 3)	intron (NM_001077529, intron 1 of 3)	1410.0	NM_001077529	18103.0	Mm.1260	NM_008705	ENSMUSG00000020857	Nme2	NM23-H2|NM23B|nm23-M2	NME/NM23 nucleoside diphosphate kinase 2	protein-coding	0.0	1.0	0.0	1.0	0.0	3.0
Merged-chr11-75576577-2	chr11	75576077	75577077	+	786.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173388, exon 14 of 14)	3' UTR (NM_173388, exon 14 of 14)	-11502.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-85633839-2	chr17	85633339	85634339	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13005.0	NM_011381	20473.0	Mm.370208	NM_011381	ENSMUSG00000038805	Six3	E130112M24Rik|Six3a|Six3alpha|Six3b|Six3beta	sine oculis-related homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93214976-2	chr2	93214476	93215476	+	786.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183180, intron 5 of 9)	intron (NM_183180, intron 5 of 9)	27428.0	NM_001025246	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74383449-2	chr1	74382949	74383949	+	786.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013612, exon 10 of 15)	exon (NM_013612, exon 10 of 15)	-8160.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4450188-3	chr12	4449704	4450704	+	786.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010881, intron 1 of 22)	intron (NM_010881, intron 1 of 22)	26978.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184887236-2	chr1	184886736	184887736	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4200.0	NM_178692	226777.0	Mm.169542	NM_178692	ENSMUSG00000039349	C130074G19Rik	-	RIKEN cDNA C130074G19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55206127-3	chr11	55205670	55206670	+	786.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153139, intron 1 of 10)	L3|LINE|CR1	1830.0	NM_153139	215335.0	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64394110-2	chr5	64393684	64394684	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	73758.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	1.5	0.0	4.0	1.5	0.0	3.0
Merged-chr16-93714657-2	chr16	93714157	93715157	+	786.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027293, intron 1 of 36)	intron (NM_027293, intron 1 of 36)	2750.0	NM_027293	70028.0	Mm.23230	NM_026700	ENSMUSG00000022946	Dopey2	0610038M01Rik|2610510B01Rik|AI503246|C21orf5|mKIAA0933	dopey family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100533686-6	chr7	100533219	100534219	+	786.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-3381.0	NM_183270	68185.0	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	35.0	90.0	53.5	23.0	90.0	62.0
Merged-chr6-38254177-6	chr6	38253637	38254637	+	786.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194061)	promoter-TSS (NM_194061)	-128.0	NM_194061	330286.0	Mm.277163	NM_194061	ENSMUSG00000063455	D630045J12Rik	Kiaa1549|mKIAA1549	RIKEN cDNA D630045J12 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99326259-3	chr12	99325755	99326755	+	786.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 3 of 5)	intron (NM_183186, intron 3 of 5)	123819.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-46734960-4	chr14	46734471	46735471	+	786.424988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25570.0	NM_001360041	72391.0	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding	10.0	35.5	13.5	10.5	18.0	24.0
Merged-chr4-82622678-4	chr4	82622172	82623172	+	786.391663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114683.0	NR_137202	102635783.0	Mm.41666	NR_137202		Gm11266	-	predicted gene 11266	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102579271-3	chr12	102578772	102579772	+	786.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 7 of 9)	intron (NM_172584, intron 7 of 9)	24331.0	NM_007693	12652.0	Mm.4137	NM_007693	ENSMUSG00000021194	Chga	ChrA|cgA	chromogranin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10541554-2	chr16	10541054	10542054	+	786.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_021428, intron 1 of 1)	intron (NM_021428, intron 1 of 1)	1500.0	NM_021428	58239.0	Mm.353006	NM_021428	ENSMUSG00000038055	Dexi	1810029J14Rik|AI836170|AW413143|D16Bwg0586e|Myle	dexamethasone-induced transcript	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-48968115-3	chr6	48967613	48968613	+	786.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	-7030.0	NM_001029987	243376.0	Mm.244112	NM_001029987	ENSMUSG00000068536	Doxl2	-	diamine oxidase-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45242634-3	chr19	45242185	45243185	+	786.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7449.0	NM_010691	16814.0	Mm.116815	NM_010691	ENSMUSG00000025216	Lbx1	Lbx1h	ladybird homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4491636-3	chr7	4491207	4492207	+	786.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029834, intron 3 of 21)	intron (NM_029834, intron 3 of 21)	9973.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51922548-3	chr11	51922077	51923077	+	786.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45054.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-20321458-3	chr8	20320990	20321990	+	786.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-24058.0	NR_030708	547150.0	Mm.359054	NR_030708	ENSMUSG00000071796	6820431F20Rik	-	cadherin 11 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-112402021-3	chr2	112401512	112402512	+	786.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024254, intron 1 of 9)	HAL1|LINE|L1	22801.0	NM_024254	72425.0	Mm.425091	NM_024254	ENSMUSG00000027132	Katnbl1	2410042D21Rik|AA166487|AA473307|AI467442	katanin p80 subunit B like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64129793-3	chr13	64129296	64130296	+	786.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001321)	promoter-TSS (NM_001001321)	-466.0	NM_001001321	70484.0	Mm.133731	NM_001001321	ENSMUSG00000033114	Slc35d2	5730408I21Rik|SQV7L|UGTrel8|hfrc|mUGTrel8	solute carrier family 35, member D2	protein-coding	18.5	28.0	17.0	21.0	24.5	19.0
Merged-chr2-3714197-3	chr2	3713611	3714611	+	786.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	653.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-90051866-3	chr13	90051362	90052362	+	786.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028012, intron 3 of 7)	RLTR18-int|LTR|ERVK	37746.0	NM_028012	108138.0	Mm.37531	NM_028012	ENSMUSG00000021615	Xrcc4	2310057B22Rik|AW413319|AW545101	X-ray repair complementing defective repair in Chinese hamster cells 4	protein-coding	9.0	2.5	1.0	0.0	3.0	2.0
Merged-chr11-19830817-4	chr11	19830324	19831324	+	786.325012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93618.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	2.5	0.0	13.0	1.5	0.0	0.0
Merged-chr11-82959708-3	chr11	82959167	82960167	+	786.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183201, intron 4 of 5)	RLTR30|LTR|ERV1	1014.0	NR_045932	76392.0	Mm.295205	NR_045932	ENSMUSG00000086327	Slfn5os	1700003F17Rik	schlafen 5, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164950818-2	chr2	164950281	164951281	+	786.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_013599, intron 6 of 12)	intron (NM_013599, intron 6 of 12)	2562.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	4.5	5.5	0.0	0.0	2.0	4.0
Merged-chr9-123523852-4	chr9	123523355	123524355	+	786.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-5898.0	NM_001357485	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56186728-2	chr17	56186228	56187228	+	786.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172624)	TTS (NM_172624)	-2808.0	NM_080837	28106.0	Mm.294870	NM_080837	ENSMUSG00000019579	Mydgf	D17Wsu104e|Il25|Ly6elg	myeloid derived growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128305093-4	chr7	128304580	128305580	+	786.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6949.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-28543810-4	chr3	28543319	28544319	+	786.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026910, intron 7 of 32)	intron (NM_026910, intron 7 of 32)	123876.0	NR_130342	100628591.0		NR_130342	ENSMUSG00000092990	Mir466q	Mir446q|mmu-mir-466q|mu-mir-446q	microRNA 466q	ncRNA	6.5	0.0	0.0	6.0	1.0	0.5
Merged-chr15-76244520-2	chr15	76244020	76245020	+	786.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1080.0	NM_001163575	671535.0	Mm.373750	NM_001163575	ENSMUSG00000063268	Parp10	-	poly (ADP-ribose) polymerase family, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107675905-3	chr9	107675409	107676409	+	786.233337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008140, exon 8 of 9)	exon (NM_008140, exon 8 of 9)	3683.0	NM_008140	14685.0	Mm.284853	NM_008140	ENSMUSG00000034837	Gnat1	Gnat-1|Ird1|Ird2|Tralpha|irdc|irdr|transducin	guanine nucleotide binding protein, alpha transducing 1	protein-coding	0.0	0.0	2.5	0.0	0.0	0.0
Merged-chr5-102537949-3	chr5	102537458	102538458	+	786.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146161, intron 1 of 8)	intron (NM_146161, intron 1 of 8)	56567.0	NM_029270	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17000873-3	chr12	17000375	17001375	+	786.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172574)	promoter-TSS (NM_172574)	-757.0	NM_172574	217430.0	Mm.379451	NM_172574	ENSMUSG00000045679	Pqlc3	C78076|E030024M05Rik	PQ loop repeat containing	protein-coding	4.0	1.0	1.0	6.0	1.0	8.0
Merged-chr4-13281593-4	chr4	13281114	13282114	+	786.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	374777.0	NM_001171801	208820.0	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45731427-3	chr17	45730923	45731923	+	786.188904	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2421.0	NM_028164	72240.0	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding	0.0	0.0	0.0	8.0	0.0	0.0
Merged-chr11-97628997-3	chr11	97628413	97629413	+	786.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175332, exon 1 of 1)	exon (NM_175332, exon 1 of 1)	803.0	NM_175332	103551.0	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	0.0	0.5	0.0	2.0	2.5	0.0
Merged-chr2-101830685-4	chr2	101830147	101831147	+	786.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	8333.0	NM_001110849	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	0.5	2.5	0.5	1.5	0.0	0.0
Merged-chr5-122343127-3	chr5	122342635	122343635	+	786.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144912, intron 5 of 10)	intron (NM_144912, intron 5 of 10)	11060.0	NM_144912	231724.0	Mm.255587	NM_144912	ENSMUSG00000038569	Rad9b	A630082N15Rik|BC021784	RAD9 checkpoint clamp component B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-51099886-3	chr17	51099386	51100386	+	786.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 2 of 21)	intron (NM_028162, intron 2 of 21)	59492.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114821465-3	chr11	114820960	114821960	+	786.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22536.0	NM_181749	217302.0	Mm.269127	NM_181749	ENSMUSG00000034677	Gpr142	PGR2	G protein-coupled receptor 142	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54386559-2	chr14	54386059	54387059	+	786.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	22913.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	4.5	7.5	8.5	28.5	31.5	23.5
Merged-chr2-32964730-2	chr2	32964230	32965230	+	786.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009076)	TTS (NM_009076)	1429.0	NR_002898	104367.0	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58905020-2	chr11	58904520	58905520	+	786.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011758)	promoter-TSS (NM_011758)	-795.0	NM_011758	22698.0	Mm.127646	NM_011758	ENSMUSG00000037001	Zfp39	CTfin33|Zfp-39	zinc finger protein 39	protein-coding	0.5	0.0	3.0	4.0	0.5	1.5
Merged-chr11-6261853-2	chr11	6261353	6262353	+	786.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_026538, intron 11 of 13)	intron (NM_026538, intron 11 of 13)	5876.0	NM_026538	52513.0	Mm.29810	NM_026538	ENSMUSG00000004393	Ddx56	2600001H07Rik|D11Ertd619e|Noh61	DEAD (Asp-Glu-Ala-Asp) box polypeptide 56	protein-coding	0.0	0.5	0.0	0.0	0.5	0.0
Merged-chr2-140718442-3	chr2	140717944	140718944	+	786.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 3 of 18)	intron (NM_001013802, intron 3 of 18)	-46968.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140663136-6	chr5	140662653	140663653	+	786.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028833)	TTS (NM_028833)	-14122.0	NM_175274	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29496966-4	chr19	29496519	29497519	+	786.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	24968.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165679829-3	chr1	165679281	165680281	+	786.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	28313.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-109021606-4	chr9	109021103	109022103	+	786.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 9 of 13)	intron (NR_153430, intron 9 of 13)	-16964.0	NM_001284332	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67227361-9	chr7	67226876	67227876	+	786.037048	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175215, exon 3 of 3)	3' UTR (NM_175215, exon 3 of 3)	4760.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34198181-4	chr19	34197682	34198682	+	786.016663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360718, intron 1 of 10)	Lx5c|LINE|L1	5248.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-116166261-1	chr2	116165761	116166761	+	786.0	f1_balb.idr	Intergenic	RMER1A|Other|Other	-90165.0	NR_033447	69974.0	Mm.440293	NR_033447		2810405F15Rik	-	RIKEN cDNA 2810405F15 gene	ncRNA	9.0	7.0	1.0	9.0	0.0	3.0
Merged-chr5-139540348-1	chr5	139539848	139540848	+	786.0	f1_balb.idr	intron (NR_040701, intron 3 of 3)	CpG	-3550.0	NM_013702	22255.0	Mm.42190	NM_013702	ENSMUSG00000029546	Uncx	Chx4|Uncx4.1	UNC homeobox	protein-coding	0.0	0.0	0.0	0.0	4.5	1.5
Merged-chr1-20829894-2	chr1	20829394	20830394	+	786.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9582.0	NM_008563	17215.0	Mm.4502	NM_008563	ENSMUSG00000041859	Mcm3	AL033361|C80350|Mcmd|P1|P1-MCM3|p1.m	minichromosome maintenance complex component 3	protein-coding	4.5	11.5	4.0	3.5	4.5	2.0
Merged-chr5-33543707-2	chr5	33543207	33544207	+	786.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83804.0	NM_001359461	74504.0	Mm.294695	NM_178390	ENSMUSG00000037339	Fam53a	2410018C17Rik|5430419M09Rik|Dntnp	family with sequence similarity 53, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45477469-4	chr13	45476947	45477947	+	786.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29997.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121830883-1	chr9	121830383	121831383	+	786.0	f1_balb.idr	exon (NM_028384, exon 3 of 16)	exon (NM_028384, exon 3 of 16)	8578.0	NM_028384	100502861.0	Mm.335550	NM_028384	ENSMUSG00000079235	Ccdc13	2900041A11Rik|Gm188	coiled-coil domain containing 13	protein-coding	18.0	10.5	0.0	0.0	0.0	1.0
Merged-chr5-144282674-2	chr5	144282174	144283174	+	786.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025833, intron 7 of 13)	intron (NM_025833, intron 7 of 13)	5613.0	NR_040432	100504231.0	Mm.441035	NR_040432	ENSMUSG00000086894	Gm15708	-	predicted gene 15708	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155250490-1	chr4	155249990	155250990	+	786.0	f1_c57bl6.idr	non-coding (NR_033802, exon 1 of 3)	non-coding (NR_033802, exon 1 of 3)	524.0	NR_033802	67513.0	Mm.10374	NM_001190445	ENSMUSG00000073684	Faap20	2610002J02Rik	Fanconi anemia core complex associated protein 20	protein-coding	5.0	1.5	6.5	4.5	5.0	7.5
Merged-chr2-28543943-2	chr2	28543443	28544443	+	786.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145836, intron 5 of 17)	intron (NM_001145836, intron 5 of 17)	10479.0	NM_001145836	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11688768-2	chr16	11688268	11689268	+	786.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 18 of 20)	intron (NM_028964, intron 18 of 20)	-90934.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-46786168-1	chr13	46785668	46786668	+	786.0	f1_balb.idr	intron (NM_010617, intron 24 of 37)	ORR1A4|LTR|ERVL-MaLR	-58319.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	0.0	1.0	1.0	1.5	0.0	1.5
Merged-chr19-3834160-2	chr19	3833660	3834660	+	786.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17613.0	NM_001271496	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111804358-4	chr13	111803819	111804819	+	786.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	4674.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30444312-2	chr7	30443812	30444812	+	786.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007467, intron 2 of 16)	intron (NM_007467, intron 2 of 16)	1270.0	NM_007467	11803.0	Mm.2381	NM_007467	ENSMUSG00000006651	Aplp1	-	amyloid beta (A4) precursor-like protein 1	protein-coding	0.0	0.0	0.0	2.0	0.5	0.0
Merged-chr7-4657003-2	chr7	4656503	4657503	+	786.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172894, intron 1 of 23)	intron (NM_172894, intron 1 of 23)	1947.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27681873-2	chr2	27681373	27682373	+	786.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	4672.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98085911-2	chr7	98085411	98086411	+	786.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008663, intron 15 of 48)	intron (NM_008663, intron 15 of 48)	23337.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	25.0	49.5	35.0	17.5	26.0	15.0
Merged-chr12-25212746-2	chr12	25212246	25213246	+	786.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	83572.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.5	8.5	1.0	4.5	12.5	3.0
Merged-chr19-26693970-2	chr19	26693470	26694470	+	786.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011416, intron 21 of 32)	MTC|LTR|ERVL-MaLR	-54195.0	NM_001347439	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128608443-1	chr4	128607943	128608943	+	786.0	f1_balb.idr	intron (NM_177758, intron 1 of 7)	intron (NM_177758, intron 1 of 7)	1655.0	NM_177758	269585.0	Mm.153291	NM_177758	ENSMUSG00000061894	Zscan20	C130001F22|Zfp31|Zkscan20	zinc finger and SCAN domains 20	protein-coding	0.0	3.5	3.0	0.0	0.5	2.0
Merged-chr3-108195529-2	chr3	108195029	108196029	+	786.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028061)	TTS (NM_028061)	5305.0	NM_028061	72023.0	Mm.246391	NM_028061	ENSMUSG00000048796	Cyb561d1	1600010M23Rik|AI605489|AW457162	cytochrome b-561 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116994537-2	chr11	116994037	116995037	+	786.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	75674.0	NM_172948	268510.0	Mm.35141	NM_172948	ENSMUSG00000043857	Mgat5b	C330018B01|GnT-IX|mGnTVB	mannoside acetylglucosaminyltransferase 5, isoenzyme B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-53376597-3	chr6	53376091	53377091	+	786.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 3 of 10)	intron (NM_001327821, intron 3 of 10)	89288.0	NM_001327821	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105288676-2	chr8	105288176	105289176	+	786.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166394, intron 1 of 6)	intron (NM_001166394, intron 1 of 6)	852.0	NM_001166394	74356.0	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128098323-2	chr7	128097823	128098823	+	786.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008401, intron 12 of 29)	B2_Mm2|SINE|B2	-31245.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125427563-2	chr6	125427063	125428063	+	786.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-47059.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-57537862-3	chr14	57537378	57538378	+	786.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145837, intron 2 of 2)	intron (NM_145837, intron 2 of 2)	13049.0	NM_145837	239114.0	Mm.390726	NM_145837	ENSMUSG00000050222	Il17d	AI462269|IL-17D	interleukin 17D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55976122-2	chr16	55975622	55976622	+	786.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173026, intron 1 of 10)	intron (NM_173026, intron 1 of 10)	-1505.0	NR_027965	66391.0	Mm.472722	NM_133677	ENSMUSG00000102101	Zbtb11os1	2310061J03Rik	zinc finger and BTB domain containing 11, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148497410-1	chr5	148496910	148497910	+	786.0	f1_c57bl6.idr	Intergenic	(GGA)n|Simple_repeat|Simple_repeat	54263.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	11.0	5.0	1.5	3.0	15.0	12.0
Merged-chr18-76375029-2	chr18	76374529	76375529	+	786.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112584.0	NM_001311070	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	2.0	2.0	0.0	2.0	2.0	0.0
Merged-chr8-66496426-2	chr8	66495926	66496926	+	786.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-9896.0	NM_001357208	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98895073-2	chr15	98894573	98895573	+	786.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007857, exon 2 of 3)	exon (NM_007857, exon 2 of 3)	3467.0	NM_007857	13363.0	Mm.324688	NM_007857	ENSMUSG00000023000	Dhh	C78960	desert hedgehog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105615179-2	chr5	105614700	105615700	+	786.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84769.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	4.5	6.5	10.0	4.5	6.5	10.0
Merged-chr11-118297379-2	chr11	118296879	118297879	+	786.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-7135.0	NM_001033528	72344.0	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95851323-2	chr8	95850823	95851823	+	786.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172758, intron 2 of 11)	B1F|SINE|Alu	2168.0	NM_172758	234595.0	Mm.29267	NM_172758	ENSMUSG00000036534	Slc38a7	D430050E18	solute carrier family 38, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115653945-1	chr5	115653445	115654445	+	786.0	f1_balb.idr	promoter-TSS (NR_151603)	promoter-TSS (NR_151603)	-359.0	NR_151600	75665.0	Mm.233914	NM_001080808	ENSMUSG00000041609	Bicdl1	2210403N09Rik|BICDR-1|Ccdc64	BICD family like cargo adaptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr14-20722949-2	chr14	20722449	20723449	+	786.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010811)	TTS (NM_010811)	11613.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96874032-3	chr11	96873657	96874657	+	786.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	23764.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	8.0	9.5	3.0	0.0	0.0	0.5
Merged-chr15-39974922-3	chr15	39974443	39975443	+	786.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12294.0	NR_045719	105976.0	Mm.394885	NR_045719		AU022793	-	expressed sequence AU022793	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-149192458-1	chr6	149191958	149192958	+	786.0	f1_balb.idr	Intergenic	LTRIS2|LTR|ERV1	-3746.0	NM_001113424	232566.0	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding	3.0	0.0	3.0	0.0	0.5	1.0
Merged-chr11-72550348-1	chr11	72549848	72550848	+	786.0	f0_balb.idr	promoter-TSS (NM_029932)	promoter-TSS (NM_029932)	-102.0	NM_029932	77577.0	Mm.46185	NM_029932	ENSMUSG00000020798	Spns3	9830002I17Rik	spinster homolog 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167928685-2	chr2	167928185	167929185	+	786.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3642.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134748933-2	chr4	134748433	134749433	+	786.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145554, intron 7 of 8)	intron (NM_145554, intron 7 of 8)	19071.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138013027-1	chr4	138012527	138013527	+	786.0	f0_balb.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	15202.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	5.5	1.0	7.0	37.0	57.5	59.0
Merged-chr4-28420882-3	chr4	28420391	28421391	+	786.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-392240.0	NM_001290434	13841.0	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141443073-2	chr7	141442573	141443573	+	786.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_022654, exon 2 of 16)	exon (NM_022654, exon 2 of 16)	952.0	NM_001360523	57913.0	Mm.334321	NM_022654	ENSMUSG00000025507	Pidd1	1200011D09Rik|AU042446|Lrdd|Pidd	p53 induced death domain protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99093178-2	chr7	99092678	99093678	+	786.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 4 of 14)	ORR1E|LTR|ERVL-MaLR	47966.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	1.0	5.0	1.5	1.5	7.5	0.5
Merged-chr12-112615861-2	chr12	112615361	112616361	+	786.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_198411)	TTS (NM_198411)	-4186.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150265841-2	chr4	150265341	150266341	+	786.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-16075.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	0.0	0.0	0.0	1.5	0.0	0.0
Merged-chr11-12559397-1	chr11	12558897	12559897	+	786.0	f0_balb.idr	Intergenic	Intergenic	-94437.0	NM_001282993	12808.0	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76694178-1	chr15	76693678	76694678	+	786.0	f1_c57bl6.idr	intron (NR_152559, intron 8 of 8)	intron (NR_152559, intron 8 of 8)	-2548.0	NM_182805	76282.0	Mm.30130	NM_182805	ENSMUSG00000022546	Gpt	1300007J06Rik|2310022B03Rik|ALT|ALT1|Gpt-1|Gpt1	glutamic pyruvic transaminase, soluble	protein-coding	0.0	0.0	0.5	1.0	0.0	0.5
Merged-chr19-53316180-2	chr19	53315680	53316680	+	786.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	B4A|SINE|B4	4735.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-72237314-5	chr1	72236793	72237793	+	785.993347	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6700.0	NR_155355	320933.0	Mm.440953	NR_155355		D230017M19Rik	B930094L07Rik	RIKEN cDNA D230017M19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-130773443-3	chr7	130772958	130773958	+	785.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081038)	promoter-TSS (NM_001081038)	-611.0	NM_001081038	330660.0	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3870279-2	chr12	3869779	3870779	+	785.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 4 of 22)	intron (NM_007872, intron 4 of 22)	-8035.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-58693205-2	chr3	58692705	58693705	+	785.900024	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009174)	promoter-TSS (NM_009174)	616.0	NR_045167	71301.0	Mm.254475	NR_045167	ENSMUSG00000097725	4930593A02Rik	4933440I01Rik	RIKEN cDNA 4930593A02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-79786719-4	chr1	79786225	79787225	+	785.895813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10707.0	NM_001081210	69163.0	Mm.238455	NM_001081210	ENSMUSG00000026248	Mrpl44	1810030E18Rik|5730593H20Rik|AI463302	mitochondrial ribosomal protein L44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36852626-3	chr15	36852105	36853105	+	785.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-55676.0	NM_001253806	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-80960030-4	chr13	80959522	80960522	+	785.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4052.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-50525115-4	chr2	50524678	50525678	+	785.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	170153.0	NR_154590	102634280.0		NR_154590		Gm48908	-	predicted gene 48908	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-85710398-4	chr15	85709894	85710894	+	785.858337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3075.0	NR_029727	387245.0		NR_029727	ENSMUSG00000065564	Mirlet7b	Mirnlet7b|let-7b|mmu-let-7b	microRNA let7b	ncRNA	0.0	4.0	1.0	1.5	0.5	2.0
Merged-chr16-91736514-2	chr16	91736014	91737014	+	785.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	7143.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157798530-4	chr2	157798028	157799028	+	785.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025680, intron 4 of 15)	intron (NM_025680, intron 4 of 15)	61127.0	NM_025680	66642.0	Mm.45193	NM_025680	ENSMUSG00000027649	Ctnnbl1	5730471K09Rik|NAP|NYD-SP19|P14L	catenin, beta like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131703666-3	chr1	131703161	131704161	+	785.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311096, intron 4 of 4)	intron (NM_001311096, intron 4 of 4)	14966.0	NM_145509	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	8.0	25.5	15.0	1.0	7.5	7.5
Merged-chr7-45462876-3	chr7	45462379	45463379	+	785.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_007527, intron 5 of 5)	URR1A|DNA|hAT-Charlie	-2993.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0.0	17.5	8.5	4.0	25.0	1.0
Merged-chr1-77331097-3	chr1	77330618	77331618	+	785.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	165650.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	0.0	0.0	0.0	1.5	0.0	0.0
Merged-chr11-120343824-6	chr11	120343471	120344471	+	785.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3442.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90502250-2	chr2	90501750	90502750	+	785.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-23076.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-73540331-3	chr5	73539863	73540863	+	785.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153313, intron 7 of 9)	intron (NR_153313, intron 7 of 9)	49337.0	NM_178896	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	5.5	4.0	1.0	7.5	0.0	1.0
Merged-chr14-70333779-3	chr14	70333271	70334271	+	785.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144808, intron 1 of 9)	intron (NM_144808, intron 1 of 9)	14662.0	NM_001135152	213053.0	Mm.270647	NM_144808	ENSMUSG00000022094	Slc39a14	FAD-123|ZIP-14|Zip14|fad123	solute carrier family 39 (zinc transporter), member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56818071-5	chr19	56817578	56818578	+	785.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4395.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-25420783-4	chr5	25420271	25421271	+	785.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081383, intron 2 of 58)	intron (NM_001081383, intron 2 of 58)	78012.0	NM_001081383	231051.0	Mm.332268	NM_001081383	ENSMUSG00000038056	Kmt2c	E330008K23Rik|HALR|Mll3|mKIAA1506	lysine (K)-specific methyltransferase 2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55638577-4	chr4	55638072	55639072	+	785.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106097.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.0	1.0	3.5	1.5	6.5	3.0
Merged-chr7-64226960-2	chr7	64226460	64227460	+	785.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001039104, exon 16 of 27)	exon (NM_001039104, exon 16 of 27)	21154.0	NR_029805	387207.0		NR_029805	ENSMUSG00000065585	Mir211	Mirn211|mir-211|mmu-mir-211	microRNA 211	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34402922-2	chr19	34402429	34403429	+	785.75	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	72206.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	1.5	1.0	3.5	2.0	6.0	0.0
Merged-chr19-45117057-3	chr19	45116568	45117568	+	785.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33647.0	NM_021901	21908.0	Mm.391203	NM_021901	ENSMUSG00000025215	Tlx1	Hox-11|Hox11|Tlx-1	T cell leukemia, homeobox 1	protein-coding	2.5	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45063930-3	chr19	45063357	45064357	+	785.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11384.0	NM_001362398	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	0.0	1.5	1.0	0.0	0.0	0.0
Merged-chr11-79522162-4	chr11	79521676	79522676	+	785.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077496, intron 1 of 1)	intron (NM_001077496, intron 1 of 1)	1586.0	NM_001077496	216984.0	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4279348-4	chr18	4278842	4279842	+	785.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	73611.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0.0	0.5	0.0	0.0	2.0	0.0
Merged-chr5-4537032-2	chr5	4536532	4537532	+	785.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	221184.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120981641-4	chr7	120981134	120982134	+	785.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028955)	promoter-TSS (NM_028955)	678.0	NM_007672	12585.0	Mm.1640	NM_007672	ENSMUSG00000030878	Cdr2	AA617262	cerebellar degeneration-related 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124617567-4	chr8	124617032	124618032	+	785.625	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023709, intron 19 of 19)	intron (NM_023709, intron 19 of 19)	41421.0	NM_023709	73647.0	Mm.6209	NM_023709	ENSMUSG00000031981	Capn9	2200003B16Rik|GC36|nCL-4|nCL4	calpain 9	protein-coding	1.0	5.5	0.0	0.0	1.0	2.5
Merged-chr7-114894276-3	chr7	114893760	114894760	+	785.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54390.0	NR_040317	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	11.0	25.5	15.5	11.0	6.5	16.0
Merged-chr3-84325193-4	chr3	84324713	84325713	+	785.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-20438.0	NM_001271726	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-23057511-3	chr19	23057021	23058021	+	785.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83705.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	64.5	87.5	96.5	6.5	43.5	29.0
Merged-chr3-37421386-3	chr3	37420894	37421894	+	785.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021343, intron 1 of 15)	intron (NM_021343, intron 1 of 15)	1444.0	NM_021343	57815.0	Mm.172679	NM_021343	ENSMUSG00000027722	Spata5	2510048F20Rik|C78064|Spaf	spermatogenesis associated 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110852170-3	chr12	110851673	110852673	+	785.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028365, intron 1 of 7)	intron (NM_028365, intron 1 of 7)	1894.0	NM_028365	72805.0	Mm.443524	NM_028365	ENSMUSG00000021271	Zfp839	2810455K09Rik	zinc finger protein 839	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-87926484-9	chr7	87925985	87926985	+	785.523804	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081414, intron 4 of 9)	intron (NM_001081414, intron 4 of 9)	342317.0	NM_001143834	108071.0	Mm.235018	NM_001033224	ENSMUSG00000049583	Grm5	6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b	glutamate receptor, metabotropic 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-42133524-2	chr11	42133024	42134024	+	785.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001359035, exon 10 of 10)	exon (NM_001359035, exon 10 of 10)	48674.0	NM_001359035	14394.0	Mm.439668	NM_010250	ENSMUSG00000010803	Gabra1	GABAA-alpha1|GABAAR-alpha1|Gabra-1	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1	protein-coding	0.0	2.0	0.0	0.0	3.0	0.0
Merged-chr7-145292826-2	chr7	145292326	145293326	+	785.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8083.0	NM_145379	211577.0	Mm.215151	NM_145379	ENSMUSG00000031070	Mrgprf	BC019711|Mgrc|MrgF	MAS-related GPR, member F	protein-coding	5.5	10.5	12.5	16.0	8.0	27.0
Merged-chr17-28859940-2	chr17	28859440	28860440	+	785.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034885, intron 1 of 9)	intron (NM_001034885, intron 1 of 9)	1529.0	NM_001034885	433091.0	Mm.328925	NM_001034885	ENSMUSG00000043286	Pnpla1	-	patatin-like phospholipase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113995140-2	chr5	113994640	113995640	+	785.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1383.0	NM_198109	231637.0	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot protein phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29322942-4	chr6	29322476	29323476	+	785.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207258, intron 2 of 6)	ORR1E|LTR|ERVL-MaLR	3836.0	NM_001289664	330277.0	Mm.87624	NM_207258	ENSMUSG00000039742	Fam71f1	GARI-L1|Gm764|NYD-SP18	family with sequence similarity 71, member F1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-138265631-2	chr2	138265131	138266131	+	785.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025431, intron 1 of 4)	intron (NM_001025431, intron 1 of 4)	9047.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87623430-2	chr1	87622930	87623930	+	785.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	3118.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122158906-3	chr5	122158438	122159438	+	785.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013636, intron 1 of 6)	intron (NM_013636, intron 1 of 6)	659.0	NM_013636	19047.0	Mm.280784	NM_013636	ENSMUSG00000004455	Ppp1cc	PP-1G|PP1|dis2m1	protein phosphatase 1, catalytic subunit, gamma isoform	protein-coding	2.0	9.5	9.5	5.0	16.5	10.5
Merged-chr2-174433755-2	chr2	174433255	174434255	+	785.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022325, intron 2 of 5)	intron (NM_022325, intron 2 of 5)	5284.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55414251-2	chr19	55413751	55414751	+	785.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 6 of 8)	intron (NM_001360431, intron 6 of 8)	98194.0	NM_001293686	53611.0	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	5.5	0.0	1.0	0.0	0.5	0.0
Merged-chr10-61285555-2	chr10	61285055	61286055	+	785.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12117.0	NM_001081127	237360.0	Mm.333252	NM_001081127	ENSMUSG00000059901	Adamts14	Adamts-14|TS14	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92352428-2	chr5	92351928	92352928	+	785.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	RLTR13D2|LTR|ERVK	-3539.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	3.5	0.5	3.5	9.5	5.5	5.5
Merged-chr12-80872593-2	chr12	80872093	80873093	+	785.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 5 of 6)	MTC|LTR|ERVL-MaLR	51854.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123982463-2	chr8	123981958	123982958	+	785.5	f0_balb.idr|f1_balb.idr	exon (NM_019552, exon 1 of 13)	exon (NM_019552, exon 1 of 13)	664.0	NM_019552	56199.0	Mm.274243	NM_019552	ENSMUSG00000031974	Abcb10	Abc-me|Abcb12	ATP-binding cassette, sub-family B (MDR/TAP), member 10	protein-coding	2.5	28.5	12.0	13.0	32.0	16.0
Merged-chr7-90193045-2	chr7	90192545	90193545	+	785.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 17 of 19)	intron (NM_001360867, intron 17 of 19)	62832.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	5.0	13.0	3.0	1.0	7.0	2.5
Merged-chr10-30677636-2	chr10	30677136	30678136	+	785.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 9 of 14)	intron (NM_001358842, intron 9 of 14)	-21769.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-6281407-2	chr6	6280907	6281907	+	785.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_136906)	TTS (NR_136906)	32748.0	NR_136905	101056138.0	Mm.389085	NR_136904	ENSMUSG00000093482	Gm20619	-	predicted gene 20619	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17347944-2	chr10	17347444	17348444	+	785.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-252162.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-8685587-2	chr8	8685087	8686087	+	785.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176849, intron 1 of 3)	intron (NM_176849, intron 1 of 3)	4575.0	NR_106114	102465762.0		NR_106114	ENSMUSG00000098917	Mir7654	Gm27748|mmu-mir-7654	microRNA 7654	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47507455-3	chr14	47506920	47507920	+	785.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027414, exon 3 of 6)	non-coding (NR_027414, exon 3 of 6)	34859.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	40.0	94.5	63.0	8.5	7.5	8.0
Merged-chr2-143950280-2	chr2	143949780	143950780	+	785.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024281, intron 20 of 23)	intron (NM_024281, intron 20 of 23)	34949.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9980424-2	chr19	9979924	9980924	+	785.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073181)	promoter-TSS (NR_073181)	-176.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-58665545-2	chr2	58665045	58666045	+	785.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289660, intron 1 of 7)	intron (NM_001289660, intron 1 of 7)	-89639.0	NM_001289659	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-105341000-4	chr13	105340483	105341483	+	785.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46498.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101107253-2	chr7	101106742	101107742	+	785.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1533.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	11.5	8.0	15.5	8.5	16.0	12.0
Merged-chr10-21941369-3	chr10	21940857	21941857	+	785.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 2 of 13)	intron (NM_001161845, intron 2 of 13)	-37315.0	NM_001161847	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23563511-2	chr16	23563011	23564011	+	785.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42696.0	NM_001359083	17174.0	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-124707892-2	chr4	124707392	124708392	+	785.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010213, exon 6 of 6)	exon (NM_010213, exon 6 of 6)	-6969.0	NM_029157	75062.0	Mm.25779	NM_029157	ENSMUSG00000028902	Sf3a3	4930512K19Rik|60kDa	splicing factor 3a, subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118849147-3	chr7	118848623	118849623	+	785.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168219, intron 2 of 3)	intron (NM_001168219, intron 2 of 3)	6490.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	0.0	3.0	2.5	1.0	7.0	1.5
Merged-chr2-11706327-2	chr2	11705827	11706827	+	785.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271499, intron 1 of 6)	intron (NM_001271499, intron 1 of 6)	615.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-62854418-2	chr13	62853918	62854918	+	785.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007994, intron 2 of 6)	intron (NM_007994, intron 2 of 6)	3952.0	NM_007994	14120.0	Mm.391871	NM_007994	ENSMUSG00000021456	Fbp2	Fbp-1|Fbp1|Rae-30	fructose bisphosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86417783-2	chr1	86417283	86418283	+	785.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8546.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25725144-2	chr7	25724644	25725644	+	785.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144922, intron 12 of 14)	intron (NM_144922, intron 12 of 14)	-6091.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71308765-4	chr8	71308204	71309204	+	785.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	35990.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	36.0	35.5	41.5	45.5	47.5	84.5
Merged-chr2-173227723-3	chr2	173227223	173228223	+	785.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_022995, exon 4 of 4)	3' UTR (NM_022995, exon 4 of 4)	-8801.0	NM_001139519	58203.0	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-67424207-3	chr9	67423751	67424751	+	785.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081242, intron 2 of 57)	intron (NM_001081242, intron 2 of 57)	135452.0	NM_001081242	70549.0	Mm.33645	NM_027458	ENSMUSG00000052698	Tln2	5730421P04Rik|AI507121|AI787438|AL118320|mKIAA0320	talin 2	protein-coding	0.5	1.5	1.0	5.0	6.0	0.0
Merged-chr14-67860579-3	chr14	67860070	67861070	+	785.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105857)	promoter-TSS (NR_105857)	-825.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-33916662-6	chr1	33916091	33917091	+	785.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276764, intron 2 of 102)	ORR1D1|LTR|ERVL-MaLR	8366.0	NM_001276764	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-67359880-3	chr1	67359347	67360347	+	785.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	236820.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-24074572-3	chr18	24074083	24075083	+	785.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47236.0	NM_172625	225280.0	Mm.258973	NM_172625	ENSMUSG00000047989	Ino80c	D030070L09Rik	INO80 complex subunit C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104715156-4	chr3	104714646	104715646	+	785.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62401.0	NM_183224	329731.0	Mm.389494	NM_183224	ENSMUSG00000055865	Fam19a3	7530404M11Rik|Sam3|TAFA3|Tafa-3	family with sequence similarity 19, member A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-57328642-2	chr8	57328141	57329141	+	785.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3794.0	NR_131041	75996.0	Mm.399754	NR_131041	ENSMUSG00000097910	5033428I22Rik	-	RIKEN cDNA 5033428I22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr14-76287396-3	chr14	76286862	76287862	+	785.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35900.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124750288-3	chr8	124749757	124750757	+	785.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081120, intron 1 of 1)	intron (NM_001081120, intron 1 of 1)	1552.0	NM_001081120	69627.0	Mm.271600	NM_001081120	ENSMUSG00000043068	Fam89a	2310031A18Rik	family with sequence similarity 89, member A	protein-coding	5.5	4.0	1.5	6.0	20.0	18.5
Merged-chr12-12412933-3	chr12	12412452	12413452	+	785.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20477.0	NR_045829	70858.0	Mm.410838	NR_045829	ENSMUSG00000114136	4921511I17Rik	-	RIKEN cDNA 4921511I17 gene	ncRNA	7.5	1.0	0.0	14.5	0.0	4.5
Merged-chr17-26705623-4	chr17	26705089	26706089	+	785.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10061.0	NM_029870	77128.0	Mm.275414	NM_029870	ENSMUSG00000048249	Crebrf	A930001N09Rik|LRF	CREB3 regulatory factor	protein-coding	3.0	4.0	1.5	1.5	9.0	1.5
Merged-chr2-152746950-2	chr2	152746450	152747450	+	785.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-7223.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103172730-2	chr15	103172230	103173230	+	785.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9446.0	NM_027885	71726.0	Mm.254820	NM_027885	ENSMUSG00000036061	Smug1	1200013B09Rik|A930006H09Rik|C85220	single-strand selective monofunctional uracil DNA glycosylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88025398-2	chr17	88024898	88025898	+	785.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081034, intron 1 of 22)	intron (NM_001081034, intron 1 of 22)	39534.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	3.5	0.0	0.0	0.0	0.0	0.0
Merged-chr5-108427482-2	chr5	108426982	108427982	+	785.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008806, intron 15 of 21)	intron (NM_008806, intron 15 of 21)	6917.0	NR_154996	11958.0	Mm.136093	NM_007507	ENSMUSG00000050856	Atp5k	2610008D24Rik|Atp5i|Lfm1	ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-92858694-3	chr8	92858193	92859193	+	785.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357375, intron 1 of 12)	intron (NM_001357375, intron 1 of 12)	3360.0	NM_001357374	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	1.0	4.0	6.0	6.0	8.0	8.5
Merged-chr11-54975807-3	chr11	54975336	54976336	+	785.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12896.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27340862-3	chr14	27340390	27341390	+	785.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	PB1D10|SINE|Alu	4853.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	6.5	21.5	20.0	8.5	10.0	12.5
Merged-chr2-167783632-3	chr2	167783132	167784132	+	785.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	92455.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40990033-2	chr9	40989533	40990533	+	785.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_019465, intron 4 of 9)	intron (NM_019465, intron 4 of 9)	14595.0	NM_019465	54698.0	Mm.42791	NM_019465	ENSMUSG00000032021	Crtam	-	cytotoxic and regulatory T cell molecule	protein-coding	3.0	0.0	2.0	2.5	0.5	1.0
Merged-chr9-50479896-3	chr9	50479399	50480399	+	785.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14626.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67059120-2	chr10	67058620	67059620	+	785.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	37868.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122126384-4	chr2	122125883	122126883	+	785.295837	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026251, intron 7 of 17)	intron (NM_026251, intron 7 of 17)	-7997.0	NM_145531	214585.0	Mm.222303	NM_145531	ENSMUSG00000033396	Spg11	6030465E24Rik|A330015I11|C530005A01Rik	SPG11, spatacsin vesicle trafficking associated	protein-coding	23.0	6.5	11.0	13.0	10.5	10.5
Merged-chr13-114457339-4	chr13	114456841	114457841	+	785.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301375, intron 1 of 5)	CpG	1610.0	NM_001301373	14313.0	Mm.4913	NM_008046	ENSMUSG00000021765	Fst	AL033346|FS	follistatin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-34616963-4	chr14	34616445	34617445	+	785.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16803.0	NM_013887	30044.0	Mm.272060	NM_013887	ENSMUSG00000021799	Opn4	1110007J02Rik|Gm533	opsin 4 (melanopsin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-85401307-2	chr9	85400807	85401807	+	785.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74157.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	3.5	16.5	2.0	0.0	0.0	0.0
Merged-chr7-28963828-2	chr7	28963328	28964328	+	785.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1496.0	NM_001360548	60595.0	Mm.81144	NM_021895	ENSMUSG00000054808	Actn4	C77391	actinin alpha 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41913060-2	chr19	41912560	41913560	+	785.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_023418, intron 1 of 3)	intron (NM_023418, intron 1 of 3)	1189.0	NM_023418	18648.0	Mm.16783	NM_023418	ENSMUSG00000011752	Pgam1	2310050F24Rik|Pgam-1	phosphoglycerate mutase 1	protein-coding	0.0	6.5	3.5	0.0	6.5	3.5
Merged-chr1-9549414-3	chr1	9548921	9549921	+	785.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357377, intron 2 of 14)	intron (NM_001357377, intron 2 of 14)	1473.0	NM_001357376	76187.0	Mm.28514	NM_175236	ENSMUSG00000025911	Adhfe1	6330565B14Rik|AI043035|Adh8|HOT	alcohol dehydrogenase, iron containing, 1	protein-coding	0.5	4.0	2.5	1.5	5.5	3.0
Merged-chr12-51673397-3	chr12	51672894	51673894	+	785.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172098, intron 1 of 15)	RMER19B|LTR|ERVK	-17572.0	NM_001329699	11782.0	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-51543967-3	chr6	51543468	51544468	+	785.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127348)	promoter-TSS (NM_001127348)	-555.0	NM_028035	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-175639980-3	chr1	175639480	175640480	+	785.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133809, intron 4 of 14)	intron (NM_133809, intron 4 of 14)	7787.0	NM_133809	98256.0	Mm.27217	NM_133809	ENSMUSG00000039783	Kmo	AI046660	kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)	protein-coding	3.0	2.0	7.0	0.0	5.5	2.0
Merged-chr2-45103166-4	chr2	45102666	45103666	+	785.214294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	7111.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-15665222-3	chr18	15664709	15665709	+	785.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199055, intron 1 of 3)	intron (NM_199055, intron 1 of 3)	52837.0	NM_199055	71367.0	Mm.329304	NM_199055	ENSMUSG00000047161	Chst9	5430438D01Rik	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19888037-3	chr7	19887548	19888548	+	785.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177036)	promoter-TSS (NM_177036)	-83.0	NM_177036	319930.0	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-33003682-4	chr13	33003177	33004177	+	785.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009256)	promoter-TSS (NM_009256)	-864.0	NM_009256	20723.0	Mm.245041	NM_009256	ENSMUSG00000045827	Serpinb9	BB283241|CAP-3|CAP3|PI-9|PI9|Spi6|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9	protein-coding	19.0	36.5	28.5	20.5	9.0	27.0
Merged-chr11-119190695-2	chr11	119190195	119191195	+	785.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347625, intron 3 of 11)	intron (NM_001347625, intron 3 of 11)	-36558.0	NR_105899	102465563.0		NR_105899	ENSMUSG00000098704	Mir6934	Gm27523|mmu-mir-6934	microRNA 6934	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-115740122-3	chr9	115739643	115740643	+	785.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-169312.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	2.0	9.5	2.0	0.5	0.0	0.0
Merged-chr15-90420953-3	chr15	90420435	90421435	+	785.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	67225.0	NR_155426	102640415.0	Mm.394352	NR_155426	ENSMUSG00000116204	Gm36480	-	predicted gene, 36480	ncRNA	0.0	2.5	0.0	6.0	0.0	3.5
Merged-chr2-129431520-3	chr2	129431012	129432012	+	785.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60373.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	5.0	4.0	3.0	1.0	7.5	8.0
Merged-chr18-81536346-3	chr18	81535846	81536846	+	785.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	455734.0	NR_039589	100628596.0		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49839144-3	chr16	49838639	49839639	+	785.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16515.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-49051050-3	chr10	49050560	49051560	+	785.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	736877.0	NM_001358866	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	2.0	0.0	0.5	5.5	8.5	4.0
Merged-chr5-66113775-2	chr5	66113292	66114292	+	785.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	B3|SINE|B2	-15613.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	41.5	87.5	91.0	51.5	107.0	61.5
Merged-chr6-108599517-3	chr6	108599048	108600048	+	785.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104577, intron 3 of 6)	MLTR14|LTR|ERV1	23619.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	5.5	13.0	12.0	12.0	32.5	7.5
Merged-chr8-36533520-3	chr8	36533015	36534015	+	785.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44324.0	NM_176952	319582.0	Mm.180924	NM_176952	ENSMUSG00000039620	6430573F11Rik	Kiaa1456|TRM9L|Trmt9b	RIKEN cDNA 6430573F11 gene	protein-coding	2.5	16.5	4.5	3.5	13.0	10.5
Merged-chr3-96639408-3	chr3	96638910	96639910	+	785.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011069, intron 3 of 3)	B3|SINE|B2	3563.0	NM_001162388	18632.0	Mm.20901	NM_011069	ENSMUSG00000028102	Pex11b	PEX11beta|Pex11pbeta	peroxisomal biogenesis factor 11 beta	protein-coding	6.5	0.0	3.0	3.0	0.0	1.0
Merged-chr11-100735659-4	chr11	100735130	100736130	+	785.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305003, intron 1 of 5)	intron (NM_001305003, intron 1 of 5)	2585.0	NM_024456	19345.0	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94295093-3	chr13	94294588	94295588	+	785.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-9257.0	NM_001346609	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111503260-4	chr10	111502763	111503763	+	785.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2475.0	NR_033603	382421.0	Mm.245643	NR_033603	ENSMUSG00000111997	Gm5176	EG382421	high mobility group box 2 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127536636-7	chr10	127536090	127537090	+	785.019043	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2031.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.0	0.0	1.5	0.0	0.0	1.0
Merged-chr16-45252619-2	chr16	45252094	45253094	+	785.0	f0_balb.idr|f1_balb.idr	3' UTR (NM_177584, exon 6 of 6)	3' UTR (NM_177584, exon 6 of 6)	28257.0	NM_177584	208154.0	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	0.0	2.0	0.5	1.0	5.5	6.0
Merged-chr1-180973390-2	chr1	180972890	180973890	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144794, intron 22 of 22)	intron (NM_144794, intron 22 of 22)	30872.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-48913074-3	chr7	48912566	48913566	+	785.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	-31470.0	NM_001360812	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136111599-2	chr1	136111099	136112099	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081023, intron 35 of 43)	ORR1G|LTR|ERVL-MaLR	19584.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59267201-2	chr10	59266701	59267701	+	785.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR24|LTR|ERV1	45279.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90508188-2	chr2	90507688	90508688	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-29014.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121479679-2	chr9	121479179	121480179	+	785.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16015.0	NM_001284508	12424.0	Mm.2619	NM_031161	ENSMUSG00000032532	Cck	-	cholecystokinin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100670961-1	chr5	100670461	100671461	+	785.0	f1_balb.idr	intron (NM_027978, intron 1 of 6)	ORR1D2|LTR|ERVL-MaLR	3295.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	0.0	3.5	0.0	0.0	0.0	0.0
Merged-chr1-131828748-2	chr1	131828248	131829248	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173865, intron 1 of 10)	intron (NM_173865, intron 1 of 10)	736.0	NM_173865	98396.0	Mm.389181	NM_173865	ENSMUSG00000013275	Slc41a1	AI573938|B230315F01Rik	solute carrier family 41, member 1	protein-coding	6.5	9.0	18.5	6.0	9.0	18.0
Merged-chr2-113444006-1	chr2	113443506	113444506	+	785.0	f0_balb.idr	intron (NM_001285459, intron 1 of 16)	intron (NM_001285459, intron 1 of 16)	2942.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	16.0	29.5	27.0	9.5	33.5	40.5
Merged-chr14-14080282-2	chr14	14079782	14080782	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139227, intron 4 of 11)	intron (NM_139227, intron 4 of 11)	40622.0	NM_025550	66413.0	Mm.27591	NM_025550	ENSMUSG00000021737	Psmd6	2400006A19Rik	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127484759-2	chr2	127484259	127485259	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019789, intron 2 of 8)	intron (NM_019789, intron 2 of 8)	-2260.0	NM_001111331	56461.0	Mm.315292	NM_019789	ENSMUSG00000079056	Kcnip3	4933407H12Rik|AI413860|Csen|DREAM|KChIP3|R74849	Kv channel interacting protein 3, calsenilin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr12-12148051-4	chr12	12147544	12148544	+	785.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114095.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51482904-2	chr3	51482404	51483404	+	785.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR40a|LTR|ERVL	-1062.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-13368525-2	chr14	13368025	13369025	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028052, intron 2 of 5)	intron (NM_028052, intron 2 of 5)	83745.0	NM_028052	72003.0	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5507317-1	chr2	5506817	5507817	+	785.0	f0_balb.idr	intron (NM_001290375, intron 2 of 10)	intron (NM_001290375, intron 2 of 10)	127927.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0.0	0.0	0.0	0.0	3.0	0.0
Merged-chr1-16203280-3	chr1	16202794	16203794	+	785.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97412.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-23410943-2	chr5	23410485	23411485	+	785.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23368.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	6.5	10.5	9.0	1.5	4.5	5.5
Merged-chr6-38910209-2	chr6	38909709	38910709	+	785.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8777.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-36158231-1	chr8	36157731	36158731	+	785.0	f0_balb.idr	intron (NR_151736, intron 2 of 3)	intron (NR_151736, intron 2 of 3)	2221.0	NR_151736	330738.0	Mm.128075	NR_151736	ENSMUSG00000109704	Gm38414	A230084N10|Gm45568	predicted gene, 38414	ncRNA	3.5	2.5	0.0	2.5	9.5	5.0
Merged-chr3-27283051-2	chr3	27282551	27283551	+	785.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34026.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11697956-2	chr16	11697456	11698456	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 18 of 20)	intron (NM_028964, intron 18 of 20)	-81746.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85848387-3	chr12	85847890	85848890	+	785.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 5 of 32)	MLT1F1|LTR|ERVL-MaLR	23440.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62342093-2	chr10	62341593	62342593	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038038, intron 1 of 1)	intron (NR_038038, intron 1 of 1)	1486.0	NR_038038	70162.0	Mm.441212	NR_038038		Hk1os	2210417K05Rik	hexokinase 1, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13982416-2	chr10	13981901	13982901	+	785.0	f0_balb.idr|f1_balb.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	16022.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	71.0	223.0	149.5	51.0	99.0	96.0
Merged-chr2-127340551-2	chr2	127340051	127341051	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172539, intron 1 of 8)	intron (NM_172539, intron 1 of 8)	-1085.0	NM_001291003	215095.0	Mm.31313	NM_172539	ENSMUSG00000050468	Astl	7420700F21|C87576|Sas1b	astacin-like metalloendopeptidase (M12 family)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30412396-2	chr2	30411896	30412896	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007760, intron 2 of 13)	intron (NM_007760, intron 2 of 13)	3352.0	NM_007760	12908.0	Mm.20396	NM_007760	ENSMUSG00000026853	Crat	AW107812|CARAT	carnitine acetyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166729210-2	chr2	166728710	166729710	+	785.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER58A|DNA|hAT-Charlie	-15378.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141954247-2	chr4	141953747	141954747	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 11 of 31)	intron (NM_177868, intron 11 of 31)	-28745.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95626910-2	chr3	95626410	95627410	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001026212, intron 2 of 2)	intron (NM_001026212, intron 2 of 2)	1930.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25365343-2	chr10	25364843	25365843	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 1 of 16)	intron (NM_001358754, intron 1 of 16)	5545.0	NM_001358751	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81846962-1	chr15	81846462	81847462	+	785.0	f1_c57bl6.idr	Intergenic	Intergenic	11364.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	23.5	58.5	81.0	38.0	42.0	40.0
Merged-chr11-69052982-4	chr11	69052565	69053565	+	785.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3-int|LTR|ERVL-MaLR	-6710.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3668112-2	chr2	3667612	3668612	+	785.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45346.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122447700-2	chr8	122447200	122448200	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_015497, intron 1 of 2)	MTC|LTR|ERVL-MaLR	3622.0	NR_015497	319574.0	Mm.271989	NR_015497	ENSMUSG00000110656	Gm20735	-	predicted gene, 20735	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100504101-2	chr7	100503601	100504601	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153527, intron 6 of 7)	intron (NM_153527, intron 6 of 7)	10714.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	53.5	79.5	35.5	4.0	26.5	17.0
Merged-chr7-16173081-2	chr7	16172579	16173579	+	785.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2316.0	NM_001277988	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	6.0	0.0	2.0	0.0	0.0	0.0
Merged-chr5-146750468-2	chr5	146749968	146750968	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 6 of 8)	MER68|LTR|ERVL	44488.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	5.0	7.0	4.5	4.0	5.0	6.5
Merged-chr10-108300998-4	chr10	108300491	108301491	+	785.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31198.0	NM_054056	114774.0	Mm.391419	NM_054056	ENSMUSG00000035873	Pawr	2310001G03Rik|PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52651581-3	chr13	52651088	52652088	+	785.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54706.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-97776856-2	chr4	97776356	97777356	+	785.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122953)	promoter-TSS (NM_001122953)	-770.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97310427-2	chr6	97309927	97310927	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 13 of 23)	L1M4|LINE|L1	-57647.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.0	3.0	0.5	6.0	0.5	0.0
Merged-chr11-115629286-2	chr11	115628786	115629786	+	785.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026071)	promoter-TSS (NM_026071)	-991.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134497573-1	chr4	134497073	134498073	+	785.0	f1_balb.idr	intron (NM_001285849, intron 1 of 2)	intron (NM_001285849, intron 1 of 2)	532.0	NM_001285849	71904.0	Mm.142343	NM_027995	ENSMUSG00000037348	Paqr7	2310021M12Rik|AV001994|BB007237|Mpra|PGLP|mPR	progestin and adipoQ receptor family member VII	protein-coding	24.5	45.5	45.5	17.5	59.5	54.0
Merged-chr4-9650079-1	chr4	9649579	9650579	+	785.0	f1_balb.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	-6362.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	86.0	202.0	108.5	66.0	177.0	82.0
Merged-chr8-11037620-1	chr8	11037120	11038120	+	785.0	f0_balb.idr	intron (NR_046017, intron 1 of 4)	intron (NR_046017, intron 1 of 4)	-29190.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25870718-2	chr17	25870218	25871218	+	785.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1980.0	NM_026633	68241.0	Mm.328870	NM_026633	ENSMUSG00000025732	Mcrip2	9530058B02Rik|Fam195a	MAPK regulated corepressor interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-70321103-2	chr16	70320603	70321603	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 1 of 15)	intron (NM_028803, intron 1 of 15)	7154.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	3.5	2.0	0.0	0.0	3.0	0.0
Merged-chr10-95552795-2	chr10	95552295	95553295	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358996, intron 1 of 4)	intron (NM_001358996, intron 1 of 4)	6526.0	NR_037212	100526463.0		NR_037212	ENSMUSG00000092867	Mir3058	mir-3058|mmu-mir-3058	microRNA 3058	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127567269-2	chr10	127566769	127567769	+	785.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008512, exon 40 of 89)	exon (NM_008512, exon 40 of 89)	-32710.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	8.0	2.5	7.5	6.0	1.5	8.5
Merged-chr17-35513326-1	chr17	35512826	35513826	+	785.0	f1_c57bl6.idr	intron (NM_025674, intron 3 of 3)	(CA)n|Simple_repeat|Simple_repeat	3498.0	NM_001163764	106795.0	Mm.11434	NM_025674	ENSMUSG00000050410	Tcf19	5730403J10Rik|AW495861	transcription factor 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65355584-1	chr3	65355084	65356084	+	785.0	f1_balb.idr	intron (NM_001357358, intron 8 of 13)	intron (NM_001357358, intron 8 of 13)	-6155.0	NR_040390	319798.0	Mm.445698	NR_040390		A730090N16Rik	-	RIKEN cDNA A730090N16 gene	ncRNA	0.0	4.5	3.0	3.5	13.0	2.0
Merged-chr19-5646609-1	chr19	5646109	5647109	+	785.0	f1_c57bl6.idr	intron (NM_009045, intron 10 of 10)	intron (NM_009045, intron 10 of 10)	9119.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	1.5	1.5	4.5	2.0	0.0	1.0
Merged-chr10-61155527-2	chr10	61155027	61156027	+	785.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR48B|LTR|ERV1	-7843.0	NM_001316674	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34110625-2	chr2	34110125	34111125	+	785.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2890.0	NR_130173	329387.0	Mm.125817	NR_130173	ENSMUSG00000087461	C230014O12Rik	-	RIKEN cDNA C230014O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87040381-2	chr6	87039881	87040881	+	785.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2465.0	NM_013528	14583.0	Mm.19893	NM_013528	ENSMUSG00000029992	Gfpt1	2810423A18Rik|AI324119|AI449986|GFA|GFAT|GFAT1|GFAT1m|Gfpt	glutamine fructose-6-phosphate transaminase 1	protein-coding	4.0	2.0	3.5	0.0	8.5	4.5
Merged-chr3-88146373-2	chr3	88145873	88146873	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	4001.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50752791-2	chr16	50752291	50753291	+	785.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20018.0	NR_028300	68190.0	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-40963538-2	chr14	40963038	40964038	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	3358.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76805076-3	chr15	76804523	76805523	+	785.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	B4|SINE|B4	13147.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19269121-1	chr7	19268621	19269621	+	785.0	f0_c57.idr	intron (NM_009499, intron 1 of 12)	MIR|SINE|MIR	2733.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	30.5	95.5	34.5	30.5	109.5	63.0
Merged-chr1-172000844-4	chr1	172000354	172001354	+	785.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_033509)	TTS (NM_033509)	26441.0	NM_033509	93840.0	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	VANGL planar cell polarity 2	protein-coding	0.0	2.0	0.5	2.0	14.0	3.5
Merged-chr16-88483561-4	chr16	88483066	88484066	+	785.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	23412.0	NM_181490	239931.0	Mm.126860	NM_181490	ENSMUSG00000055811	Cldn17	-	claudin 17	protein-coding	0.0	0.0	3.0	0.0	0.0	0.0
Merged-chr13-65531943-2	chr13	65531443	65532443	+	785.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	253089.0	NM_178364	170936.0	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155082538-6	chr2	155082068	155083068	+	784.972229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8071.0	NM_016661	269378.0	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	5.5	7.5	9.5	0.0	4.0	8.5
Merged-chr1-55406777-4	chr1	55406272	55407272	+	784.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	826.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117144328-3	chr10	117143807	117144807	+	784.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177798, intron 1 of 9)	RSINE1|SINE|B4	4167.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8520618-4	chr10	8520049	8521049	+	784.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1724.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-53909310-4	chr1	53908767	53909767	+	784.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 13 of 28)	intron (NM_001001883, intron 13 of 28)	59843.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32726342-2	chr5	32725828	32726828	+	784.916687	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	20014.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr2-61490025-2	chr2	61489525	61490525	+	784.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88561.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-79768388-3	chr1	79767890	79768890	+	784.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6621.0	NM_027057	69368.0	Mm.293273	NM_027057	ENSMUSG00000073643	Wdfy1	1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435	WD repeat and FYVE domain containing 1	protein-coding	6.0	31.0	8.5	15.5	20.5	24.5
Merged-chr13-20305851-3	chr13	20305344	20306344	+	784.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 13 of 21)	intron (NM_080288, intron 13 of 21)	-167146.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.5	15.0	5.5	1.0	15.0	6.0
Merged-chr17-25474721-4	chr17	25474165	25475165	+	784.841675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027951, exon 4 of 6)	exon (NM_027951, exon 4 of 6)	3075.0	NM_027951	71840.0	Mm.282330	NM_027951	ENSMUSG00000024175	Tekt4	1700010L19Rik	tektin 4	protein-coding	0.0	0.5	0.0	5.0	0.5	3.0
Merged-chr5-134373450-2	chr5	134372950	134373950	+	784.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081462, intron 22 of 29)	B3A|SINE|B2	46996.0	NR_039544	100628570.0		NR_039544	ENSMUSG00000093311	Mir3965	mmu-mir-3965|mu-mir-3965	microRNA 3965	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109344551-2	chr11	109344051	109345051	+	784.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2316.0	NR_027883	67927.0	Mm.394490	NR_027883	ENSMUSG00000099630	1700096J18Rik	-	RIKEN cDNA 1700096J18 gene	ncRNA	0.0	3.0	0.0	0.0	3.0	0.0
Merged-chr15-103237804-2	chr15	103237304	103238304	+	784.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358950, intron 1 of 4)	B1_Mus1|SINE|Alu	2048.0	NM_001358950	12419.0	Mm.262059	NM_007626	ENSMUSG00000009575	Cbx5	2610029O15Rik|C75991|HP1|Hp1a|Hp1alpha	chromobox 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-93383114-2	chr15	93382614	93383614	+	784.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15220.0	NM_001347097	67197.0	Mm.293181	NM_026025	ENSMUSG00000022635	Zcrb1	2700088M22Rik|Madp-1	zinc finger CCHC-type and RNA binding motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105975824-3	chr5	105975301	105976301	+	784.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99233.0	NM_018759	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-51991728-3	chr2	51991260	51992260	+	784.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18552.0	NM_001141948	64685.0	Mm.7491	NM_019401	ENSMUSG00000026946	Nmi	-	N-myc (and STAT) interactor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53029768-2	chr4	53029268	53030268	+	784.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17888.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-38580937-3	chr5	38580396	38581396	+	784.833313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19301.0	NM_011715	22388.0	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	0.0	0.0	0.0	0.5	1.0	0.0
Merged-chr8-3278715-3	chr8	3278238	3279238	+	784.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330056, intron 1 of 21)	intron (NM_001330056, intron 1 of 21)	879.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93549327-3	chr10	93548852	93549852	+	784.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175488, intron 3 of 15)	intron (NM_175488, intron 3 of 15)	-5529.0	NM_001359749	237465.0	Mm.477086	NM_175488	ENSMUSG00000036168	Ccdc38	4933417K05Rik	coiled-coil domain containing 38	protein-coding	3.0	3.5	1.0	14.0	0.0	2.5
Merged-chr4-140959871-2	chr4	140959371	140960371	+	784.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1400.0	NM_001355515	67680.0	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37354095-2	chr13	37353595	37354595	+	784.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	8750.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.5	6.0	7.0	1.5	14.0	11.0
Merged-chr8-33601942-4	chr8	33601422	33602422	+	784.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017374, intron 1 of 6)	intron (NM_017374, intron 1 of 6)	2301.0	NM_017374	19053.0	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	3.0	17.5	7.0	2.5	7.0	1.0
Merged-chr13-93301813-2	chr13	93301313	93302313	+	784.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1944.0	NM_147176	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	3.5	1.5	7.5	4.5	4.0	4.5
Merged-chr6-39530362-2	chr6	39529862	39530862	+	784.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172477, intron 1 of 18)	intron (NM_172477, intron 1 of 18)	27472.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119045261-2	chr11	119044761	119045761	+	784.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4348.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70334697-2	chr11	70334197	70335197	+	784.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12167.0	NM_145684	11685.0	Mm.274093	NM_145684	ENSMUSG00000018907	Alox12e	12-LOX|8-LOX|AW259591|Alox12-ps1|Alox12-ps2|Aloxe|e-LOX1	arachidonate lipoxygenase, epidermal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167723830-2	chr2	167723330	167724330	+	784.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32653.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145219387-2	chr4	145218887	145219887	+	784.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 9 of 9)	intron (NM_011610, intron 9 of 9)	-24382.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20798689-4	chr13	20798198	20799198	+	784.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012054, intron 1 of 20)	intron (NM_012054, intron 1 of 20)	4585.0	NM_012054	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	34.0	114.5	76.5	31.5	32.0	15.5
Merged-chr11-107376541-2	chr11	107376041	107377041	+	784.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	94179.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-109028505-4	chr7	109028050	109029050	+	784.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021885, intron 9 of 11)	L2a|LINE|L2	17670.0	NM_021885	22141.0	Mm.439722	NM_021885	ENSMUSG00000031028	Tub	rd5|tub	tubby bipartite transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28866982-3	chr7	28866473	28867473	+	784.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008496)	TTS (NM_008496)	2587.0	NM_008496	16858.0	Mm.20973	NM_008496	ENSMUSG00000053522	Lgals7	Galectin-7|Pig1	lectin, galactose binding, soluble 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83067097-4	chr8	83066598	83067598	+	784.729187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 6 of 6)	intron (NM_177378, intron 6 of 6)	-98254.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	53.5	44.0	59.5	18.5	40.5	17.0
Merged-chr9-44318540-4	chr9	44318088	44319088	+	784.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359259, intron 1 of 13)	intron (NM_001359259, intron 1 of 13)	1694.0	NM_001359259	71764.0	Mm.491174	NM_027909	ENSMUSG00000032120	C2cd2l	1300006O23Rik|Tmem24	C2 calcium-dependent domain containing 2-like	protein-coding	16.0	26.0	22.5	9.5	31.0	16.0
Merged-chr17-27018034-4	chr17	27017559	27018559	+	784.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001251881)	promoter-TSS (NM_001251881)	24.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	2.0	0.5	0.0	2.0	0.5	0.0
Merged-chr1-148993822-3	chr1	148993316	148994316	+	784.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	928623.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78143994-3	chr10	78143486	78144486	+	784.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25782.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-105927210-3	chr11	105926720	105927720	+	784.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_181071, exon 26 of 26)	3' UTR (NM_181071, exon 26 of 26)	17267.0	NM_007805	13056.0	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29570931-3	chr11	29570434	29571434	+	784.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163521, intron 9 of 11)	RLTR20C2_MM|LTR|ERVK	-22894.0	NM_001033865	78294.0	Mm.180003	NM_024277	ENSMUSG00000020460	Rps27a	0610006J14Rik|Uba52|Ubb|Ubc	ribosomal protein S27A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80798026-4	chr15	80797523	80798523	+	784.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177124)	promoter-TSS (NM_177124)	-587.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83496102-3	chr15	83495597	83496597	+	784.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357953, intron 9 of 11)	intron (NM_001357953, intron 9 of 11)	14810.0	NM_178869	319953.0	Mm.235007	NM_178869	ENSMUSG00000022442	Ttll1	6330444E16Rik|AV014541	tubulin tyrosine ligase-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55776649-2	chr4	55776149	55777149	+	784.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-244174.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91769339-2	chr16	91768839	91769839	+	784.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	39968.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-86063514-2	chr5	86063014	86064014	+	784.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001345903, intron 1 of 19)	Lx5|LINE|L1	2069.0	NM_001345902	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	0.0	0.0	0.0	6.5	8.0	0.0
Merged-chr11-116034487-2	chr11	116034039	116035039	+	784.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286006, intron 1 of 15)	(CAAAA)n|Simple_repeat|Simple_repeat	4223.0	NM_172569	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	0.0	0.0	0.0	1.5	0.0	0.0
Merged-chr3-142495304-2	chr3	142494804	142495804	+	784.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1630.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125640331-4	chr8	125639843	125640843	+	784.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-29475.0	NM_028908	74393.0	Mm.41709	NM_028908	ENSMUSG00000050930	Map10	4933403G14Rik|AI835009|mKIAA1383	microtubule-associated protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108722878-3	chr8	108722386	108723386	+	784.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	8242.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15376551-4	chr17	15376029	15377029	+	784.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007865)	promoter-TSS (NM_007865)	-706.0	NM_007865	13388.0	Mm.4875	NM_007865	ENSMUSG00000014773	Dll1	Delta1	delta like canonical Notch ligand 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6336311-3	chr2	6335835	6336835	+	784.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080548, intron 1 of 14)	intron (NM_001080548, intron 1 of 14)	13578.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156861827-3	chr1	156861297	156862297	+	784.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028333)	TTS (NM_028333)	22774.0	NM_028333	72713.0	Mm.389206	NM_028333	ENSMUSG00000033544	Angptl1	2810039D03Rik|ANG3|ANGPT3|ANGY|ARP1	angiopoietin-like 1	protein-coding	8.0	14.5	14.0	5.5	28.0	30.5
Merged-chr12-84546174-2	chr12	84545674	84546674	+	784.583313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23654.0	NM_007701	12677.0	Mm.4405	NM_007701	ENSMUSG00000021239	Vsx2	Chx10|Hox-10|Hox10|or	visual system homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24954519-4	chr7	24953956	24954956	+	784.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15619.0	NR_106013	102465633.0		NR_106013	ENSMUSG00000098802	Mir7046	Gm27469|mmu-mir-7046	microRNA 7046	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70682099-2	chr11	70681599	70682599	+	784.575012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190379, intron 7 of 20)	intron (NM_001190379, intron 7 of 20)	6006.0	NM_001190376	216874.0	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97961280-3	chr3	97960814	97961814	+	784.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033779, intron 1 of 1)	MLT1C|LTR|ERVL-MaLR	31141.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-37026614-3	chr17	37026114	37027114	+	784.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-3216.0	NM_010814	17441.0	Mm.210857	NM_010814	ENSMUSG00000076439	Mog	B230317G11Rik	myelin oligodendrocyte glycoprotein	protein-coding	0.0	5.5	0.5	0.0	0.0	1.0
Merged-chr19-7295459-3	chr19	7295003	7296003	+	784.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080390)	promoter-TSS (NM_001080390)	-56.0	NM_001080390	13728.0	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-20028350-3	chr3	20027885	20028885	+	784.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 4 of 16)	ID_B1|SINE|B4	6925.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-48407496-3	chr4	48406994	48407994	+	784.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281978, intron 13 of 18)	B1_Mus1|SINE|Alu	65969.0	NM_172304	269536.0	Mm.272025	NM_172304	ENSMUSG00000028345	Tex10	2610206N19Rik|2810462N03Rik|BC006867	testis expressed gene 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-37318986-2	chr15	37318486	37319486	+	784.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026496, intron 8 of 15)	intron (NM_026496, intron 8 of 15)	-85827.0	NR_155442	105245924.0	Mm.391911	NR_155441	ENSMUSG00000089804	Gm16136	-	predicted gene 16136	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107303061-2	chr11	107302561	107303561	+	784.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	B3A|SINE|B2	-113680.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-103655900-2	chr5	103655400	103656400	+	784.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163550)	promoter-TSS (NM_001163550)	-168.0	NM_001163550	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3234839-2	chr12	3234339	3235339	+	784.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015551)	promoter-TSS (NR_015551)	-952.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100398766-2	chr11	100398266	100399266	+	784.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010593)	promoter-TSS (NM_010593)	650.0	NR_132425	102635937.0	Mm.421398	NR_132425		Gm12348	-	predicted gene 12348	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-56354020-1	chr13	56353520	56354520	+	784.5	f0_balb.idr	Intergenic	Intergenic	-8880.0	NR_046061	100038494.0	Mm.370447	NR_046061	ENSMUSG00000074885	Gm10782	-	predicted gene 10782	ncRNA	16.0	60.5	75.0	61.5	115.0	84.5
Merged-chr9-57774464-2	chr9	57773964	57774964	+	784.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-8604.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-109958857-2	chr7	109958357	109959357	+	784.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021494, intron 1 of 22)	intron (NM_021494, intron 1 of 22)	1565.0	NM_021494	19347.0	Mm.21904	NM_021494	ENSMUSG00000035901	Dennd5a	1500012B19Rik|AJ245569|AW496491|ORF37|Rab6ip1|mKIAA1091	DENN/MADD domain containing 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87971356-3	chr3	87970824	87971824	+	784.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016701, exon 1 of 4)	exon (NM_016701, exon 1 of 4)	231.0	NM_016701	18008.0	Mm.331129	NM_016701	ENSMUSG00000004891	Nes	AA166324|C78523|ESTM46|Ifaprc2|Marc2|RC2	nestin	protein-coding	0.0	0.0	0.0	0.0	0.0	3.5
Merged-chr3-38227365-2	chr3	38226865	38227865	+	784.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19246.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76150537-2	chr14	76150037	76151037	+	784.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39646.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131464258-2	chr1	131463758	131464758	+	784.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	63103.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-99803695-2	chr14	99803195	99804195	+	784.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	346101.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-8174861-3	chr14	8174352	8175352	+	784.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1860.0	NM_024221	68263.0	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41098542-2	chr13	41098043	41099043	+	784.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11445.0	NM_008104	107889.0	Mm.1399	NM_008104	ENSMUSG00000021362	Gcm2	Gcm-rs1|Gcm1|Gcm1-rs2	glial cells missing homolog 2	protein-coding	0.0	0.0	1.0	3.0	2.0	0.0
Merged-chr11-58610194-2	chr11	58609681	58610681	+	784.5	f0_balb.idr|f1_balb.idr	intron (NM_144544, intron 5 of 5)	MLT1F2|LTR|ERVL-MaLR	3311.0	NM_144544	78354.0	Mm.58038	NM_144544	ENSMUSG00000037145	2210407C18Rik	Ep1	RIKEN cDNA 2210407C18 gene	protein-coding	2.5	0.0	6.0	3.0	10.5	9.0
Merged-chr1-154126900-2	chr1	154126400	154127400	+	784.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-74287.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121625085-2	chr10	121624585	121625585	+	784.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359618, intron 1 of 24)	intron (NM_001359618, intron 1 of 24)	1247.0	NM_001081056	73192.0	Mm.25042	NM_001081056	ENSMUSG00000034667	Xpot	1110004L07Rik|3110065H13Rik|AI452076|C79645|EXPORTIN-T	exportin, tRNA (nuclear export receptor for tRNAs)	protein-coding	12.0	19.0	12.5	11.5	12.5	10.5
Merged-chr19-6345378-4	chr19	6344875	6345875	+	784.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_117093, intron 14 of 30)	intron (NR_117093, intron 14 of 30)	-1105.0	NR_105955	102465598.0		NR_105955	ENSMUSG00000099230	Mir6989	Gm27885|mmu-mir-6989	microRNA 6989	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30833521-2	chr5	30833021	30834021	+	784.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133350, intron 1 of 6)	MLT1C|LTR|ERVL-MaLR	18880.0	NM_133350	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43770897-2	chr19	43770397	43771397	+	784.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11411.0	NM_013806	12780.0	Mm.39054	NM_013806	ENSMUSG00000025194	Abcc2	AI173996|Abc30|Cmoat|Mrp2|cMRP	ATP-binding cassette, sub-family C (CFTR/MRP), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37556254-2	chr19	37555754	37556754	+	784.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175353, intron 1 of 21)	Lx8|LINE|L1	5836.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	4.5	15.5	6.0	4.5	15.5	6.0
Merged-chr19-5936137-2	chr19	5935637	5936637	+	784.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-11321.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43536108-2	chr4	43535608	43536608	+	784.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011602, exon 46 of 57)	exon (NM_011602, exon 46 of 57)	-12554.0	NM_001277875	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	0.0	2.0	1.0	0.0	0.0	1.0
Merged-chr14-21137103-2	chr14	21136603	21137603	+	784.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134079, intron 3 of 10)	intron (NM_134079, intron 3 of 10)	60951.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	0.5	1.0	2.5	0.5	1.0	0.0
Merged-chr14-120171191-2	chr14	120170691	120171691	+	784.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104478.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36795079-1	chr16	36794579	36795579	+	784.5	f0_balb.idr	intron (NM_134111, intron 5 of 5)	intron (NM_134111, intron 5 of 5)	-10117.0	NM_021301	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80038029-2	chr12	80037529	80038529	+	784.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74984.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29465955-3	chr2	29465448	29466448	+	784.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290489, intron 2 of 6)	L2a|LINE|L2	9346.0	NR_105753	102465170.0		NR_105753	ENSMUSG00000098539	Mir133c	Gm27865|mmu-mir-133c	microRNA 133c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133424328-3	chr4	133423818	133424818	+	784.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001358455)	TTS (NM_001358455)	54542.0	NR_039582	100628620.0		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	1.0	0.0	0.0	8.0	4.5	4.0
Merged-chr1-179960419-3	chr1	179959909	179960909	+	784.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346805)	promoter-TSS (NM_001346805)	-351.0	NM_001359541	226751.0	Mm.259655	NM_001033285	ENSMUSG00000026490	Cdc42bpa	A930014J19Rik|DMPK-like	CDC42 binding protein kinase alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111086335-3	chr9	111085838	111086838	+	784.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28820.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.0	2.0	1.5	0.0	2.0	1.5
Merged-chr2-117197307-3	chr2	117196831	117197831	+	784.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12204.0	NR_030440	732489.0		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34416769-4	chr10	34416280	34417280	+	784.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176968, intron 1 of 11)	intron (NM_176968, intron 1 of 11)	1771.0	NM_176968	319638.0	Mm.73467	NM_176968	ENSMUSG00000039480	Nt5dc1	6030401B09Rik|AW987726|Nt5c2l1	5'-nucleotidase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156009175-3	chr1	156008665	156009665	+	784.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144791, intron 6 of 6)	intron (NM_144791, intron 6 of 6)	25652.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	32.0	69.5	60.0	9.5	38.5	20.5
Merged-chr4-132813701-3	chr4	132813200	132814200	+	784.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17336.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66175835-4	chr14	66175230	66176230	+	784.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172498, exon 11 of 30)	exon (NM_172498, exon 11 of 30)	34770.0	NM_144803	110902.0	Mm.57350	NM_144803	ENSMUSG00000022041	Chrna2	Acra-2|Acra2|BC011490	cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal)	protein-coding	1.0	2.5	1.5	5.0	7.0	0.0
Merged-chr14-54494385-4	chr14	54493876	54494876	+	784.404175	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18276.0	NM_080726	140743.0	Mm.274727	NM_080726	ENSMUSG00000022176	Rem2	AW411893	rad and gem related GTP binding protein 2	protein-coding	20.0	5.5	0.5	11.0	10.5	1.0
Merged-chr7-45698589-2	chr7	45698089	45699089	+	784.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1378.0	NM_009800	12348.0	Mm.27736	NM_009800	ENSMUSG00000003273	Car11	Ca11	carbonic anhydrase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127263182-4	chr10	127262687	127263687	+	784.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008447, exon 1 of 28)	5' UTR (NM_008447, exon 1 of 28)	176.0	NM_008447	16572.0	Mm.30355	NM_008447	ENSMUSG00000074657	Kif5a	D10Bwg0738e|Khc|Kif5|Kns|mKIAA4086	kinesin family member 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55485518-2	chr12	55485018	55486018	+	784.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	7129.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114912674-2	chr6	114912174	114913174	+	784.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	9147.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-78542679-2	chr16	78542179	78543179	+	784.333374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001252440, exon 5 of 5)	3' UTR (NM_001252440, exon 5 of 5)	-17637.0	NR_040569	75818.0	Mm.410817	NR_040569		4930478L05Rik	-	RIKEN cDNA 4930478L05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-60678753-2	chr14	60678253	60679253	+	784.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033272, intron 1 of 12)	intron (NM_001033272, intron 1 of 12)	44048.0	NM_001033272	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	2.0	0.0	3.0	2.0	0.0	0.5
Merged-chr2-167056660-2	chr2	167056160	167057160	+	784.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033196, exon 3 of 14)	exon (NM_001033196, exon 3 of 14)	-6274.0	NR_138563	68949.0	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119614767-3	chr13	119614290	119615290	+	784.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9029.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26950046-3	chr8	26949564	26950564	+	784.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-27272.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-40731477-2	chr13	40730977	40731977	+	784.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301674, intron 2 of 7)	CpG	-1020.0	NM_001122948	21418.0	Mm.85544	NM_011547	ENSMUSG00000021359	Tfap2a	AP-2|AP2alpha|Ap-2 (a)|Ap2|Ap2tf|Tcfap2a	transcription factor AP-2, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84972879-2	chr8	84972378	84973378	+	784.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317385, intron 5 of 5)	ID_B1|SINE|B4	3256.0	NM_011563	21672.0	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	4.0	8.0	6.5	7.5	2.5	3.5
Merged-chr3-127526893-3	chr3	127526417	127527417	+	784.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18172.0	NR_146435	110008574.0		NR_146435		LOC110008574	-	miR-302 host gene	ncRNA	5.5	44.0	25.5	12.5	7.0	6.5
Merged-chr17-63430613-3	chr17	63430137	63431137	+	784.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 4 of 8)	MTEa|LTR|ERVL-MaLR	69943.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152619994-3	chr1	152619468	152620468	+	784.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	5249.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145260015-3	chr7	145259548	145260548	+	784.333313	f1_balb.idr|f1_c57bl6.idr	intron (NR_132643, intron 15 of 22)	intron (NR_132643, intron 15 of 22)	23963.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	3.0	2.0	3.0	0.0	1.0	5.5
Merged-chr6-113747436-2	chr6	113746936	113747936	+	784.325012	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347365, exon 24 of 24)	3' UTR (NM_001347365, exon 24 of 24)	-6755.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45082492-2	chr19	45081992	45082992	+	784.3000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6405.0	NM_001362397	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118800277-4	chr7	118799796	118800796	+	784.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027815, intron 19 of 30)	intron (NM_027815, intron 19 of 30)	55317.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	31.5	20.5	36.5	28.5	62.5	27.0
Merged-chr16-10461401-4	chr16	10460901	10461901	+	784.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14039.0	NM_001013778	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-26526386-4	chr14	26525892	26526892	+	784.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 1 of 22)	intron (NM_001310445, intron 1 of 22)	8232.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23542697-3	chr13	23542165	23543165	+	784.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178197)	TTS (NM_178197)	779.0	NM_178197	319182.0	Mm.352273	NM_178197	ENSMUSG00000114456	Hist1h2bh	H2b-221	histone cluster 1, H2bh	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34040286-2	chr17	34039660	34040660	+	784.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009926, intron 1 of 63)	intron (NM_009926, intron 1 of 63)	1022.0	NM_001317722	12815.0	Mm.20230	NM_009926	ENSMUSG00000024330	Col11a2	-	collagen, type XI, alpha 2	protein-coding	0.5	4.5	0.0	2.5	1.5	4.5
Merged-chr2-167681738-2	chr2	167681238	167682238	+	784.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7177.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7016641-2	chr19	7016141	7017141	+	784.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362399, intron 2 of 14)	intron (NM_001362399, intron 2 of 14)	2828.0	NM_153795	108101.0	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129369247-4	chr2	129368747	129369747	+	784.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015474)	promoter-TSS (NR_015474)	-655.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	20.5	70.5	56.0	42.0	143.5	60.5
Merged-chr1-93631547-3	chr1	93631077	93632077	+	784.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021537, intron 2 of 11)	intron (NM_021537, intron 2 of 11)	4150.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	0.0	5.5	1.0	4.5	5.0	4.0
Merged-chr9-57762718-4	chr9	57762239	57763239	+	784.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007713, intron 1 of 12)	intron (NM_007713, intron 1 of 12)	3121.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-63279352-2	chr17	63278868	63279868	+	784.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 6 of 8)	intron (NM_015794, intron 6 of 8)	33605.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31370241-3	chr3	31369749	31370749	+	784.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59930.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46951934-5	chr8	46951462	46952462	+	784.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34925.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-91362270-4	chr9	91361739	91362739	+	784.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009573, intron 2 of 2)	intron (NM_009573, intron 2 of 2)	3560.0	NM_009573	22771.0	Mm.335350	NM_009573	ENSMUSG00000032368	Zic1	ZIC|ZNF201	zinc finger protein of the cerebellum 1	protein-coding	0.0	0.0	0.0	5.0	0.0	0.0
Merged-chr17-5783455-3	chr17	5782955	5783955	+	784.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-15202.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77982352-2	chr15	77981852	77982852	+	784.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11528.0	NM_018749	55944.0	Mm.3955	NM_018749	ENSMUSG00000016554	Eif3d	66/67kDa|AA407891|Eif3s7|eIF3p66	eukaryotic translation initiation factor 3, subunit D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-53771566-2	chr9	53771066	53772066	+	784.166687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028060)	promoter-TSS (NM_028060)	31.0	NM_028060	72022.0	Mm.26159	NM_028060	ENSMUSG00000042195	Slc35f2	1500009K05Rik|AU019213	solute carrier family 35, member F2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69005366-3	chr8	69004813	69005813	+	784.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-83423.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	34.5	100.0	40.0	43.5	56.0	41.0
Merged-chr11-54524118-2	chr11	54523618	54524618	+	784.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 1 of 28)	intron (NM_001252494, intron 1 of 28)	1273.0	NM_001252496	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-140167249-3	chr4	140166729	140167729	+	784.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198610, intron 1 of 9)	ORR1E|LTR|ERVL-MaLR	24356.0	NR_153821	102636673.0	Mm.449180	NR_153821		Gm13029	Gm33676	predicted gene 13029	ncRNA	6.0	1.0	0.0	17.5	66.5	47.5
Merged-chr9-25251289-2	chr9	25250789	25251789	+	784.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359736)	promoter-TSS (NM_001359736)	-702.0	NM_001359736	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116421362-2	chr11	116420881	116421881	+	784.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8349.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	6.5	9.5	5.5	0.0	21.0	6.5
Merged-chr10-44601792-2	chr10	44601292	44602292	+	784.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143044.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129067756-4	chr4	129067264	129068264	+	784.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 1 of 8)	intron (NM_029219, intron 1 of 8)	9493.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99242288-4	chr9	99241800	99242800	+	784.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1041.0	NM_023873	68121.0	Mm.288739	NM_023873	ENSMUSG00000056267	Cep70	6720484E09Rik|Bite|C030018L16Rik	centrosomal protein 70	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104249871-4	chr8	104249397	104250397	+	784.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286383)	promoter-TSS (NM_001286383)	-964.0	NM_001037841	75458.0	Mm.269219	NM_029295	ENSMUSG00000054400	Cklf	1700001C14Rik|1810018M11Rik|A730028G07Rik|C32|CKLF1|CKLF3|CKLF4|CKLF5|Cklf2|Cklf6|HSPC224|UCK-1	chemokine-like factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-31125538-5	chr7	31124961	31125961	+	784.11499	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011322, intron 1 of 5)	intron (NM_011322, intron 1 of 5)	1562.0	NM_011322	20266.0	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	2.0	9.0	2.0	6.0	10.0	21.0
Merged-chr14-101520137-3	chr14	101519603	101520603	+	784.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	89088.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24628689-5	chr16	24628184	24629184	+	784.099976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-93171.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-9094182-3	chr15	9093676	9094676	+	784.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040395, intron 6 of 12)	MLT1F1|LTR|ERVL-MaLR	22916.0	NM_001040395	68646.0	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113226920-3	chr6	113226421	113227421	+	784.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-10922.0	NM_001362183	97287.0	Mm.197816	NM_026849	ENSMUSG00000030269	Mtmr14	1110061O04Rik|AW553738|C76151	myotubularin related protein 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-157046991-3	chr1	157046447	157047447	+	784.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61703.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	17.0	28.0	16.5	22.5	67.5	25.0
Merged-chr15-86051241-4	chr15	86050746	86051746	+	784.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6449.0	NM_172611	223752.0	Mm.24442	NM_172611	ENSMUSG00000035900	Gramd4	9930016O13	GRAM domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118978024-4	chr10	118977666	118978666	+	784.035706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51023.0	NR_110482	216377.0	Mm.208936	NR_110482	ENSMUSG00000112854	Gm38403	C230029M16	predicted gene, 38403	ncRNA	3.0	0.0	3.5	3.0	0.0	6.5
Merged-chr6-115480122-2	chr6	115479625	115480625	+	784.0	f0_balb.idr|f0_c57.idr	intron (NM_001308354, intron 7 of 7)	intron (NM_001308354, intron 7 of 7)	58059.0	NM_011146	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95071407-2	chr8	95070907	95071907	+	784.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042715, intron 10 of 17)	intron (NM_001042715, intron 10 of 17)	-9794.0	NM_028805	74187.0	Mm.28382	NM_028805	ENSMUSG00000031787	Katnb1	2410003J24Rik|KAT	katanin p80 (WD40-containing) subunit B 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-123082412-3	chr7	123081896	123082896	+	784.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41489.0	NM_144925	233833.0	Mm.102305	NM_144925	ENSMUSG00000052707	Tnrc6a	2010321I05Rik|3110054G10Rik|AW557223|CAGH26|D130023A07Rik|GW182|Tnrc6	trinucleotide repeat containing 6a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99121582-2	chr15	99121082	99122082	+	784.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-5263.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53091614-2	chr4	53091114	53092114	+	784.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 9 of 49)	MIRb|SINE|MIR	68281.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38573512-3	chr18	38572975	38573975	+	784.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27793.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-59176213-2	chr18	59175713	59176713	+	784.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081328, exon 1 of 3)	exon (NM_001081328, exon 1 of 3)	873.0	NM_001081328	78923.0	Mm.84007	NM_001081328	ENSMUSG00000058152	Chsy3	4833446K15Rik|AI662215	chondroitin sulfate synthase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88334548-2	chr3	88334048	88335048	+	784.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024246)	promoter-TSS (NM_024246)	-115.0	NM_024246	71913.0	Mm.34256	NM_024246	ENSMUSG00000001420	Tmem79	2310042N02Rik|2310074C17Rik|Matt|ma	transmembrane protein 79	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-30610201-1	chr15	30609701	30610701	+	784.0	f1_balb.idr	intron (NM_001355502, intron 3 of 21)	L1MD2|LINE|L1	-428925.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	42.5	89.0	65.5	52.0	69.5	39.0
Merged-chr11-4422268-1	chr11	4421768	4422768	+	784.0	f0_balb.idr	intron (NM_029458, intron 5 of 10)	intron (NM_029458, intron 5 of 10)	18814.0	NM_029458	75828.0	Mm.159592	NM_029458	ENSMUSG00000020419	Hormad2	4930529M09Rik	HORMA domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4925787-2	chr7	4925287	4926287	+	784.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173008)	promoter-TSS (NM_173008)	-57.0	NM_173008	269855.0	Mm.44190	NM_173008	ENSMUSG00000035279	Ssc5d	A430110N23Rik|S5D-SRCRB	scavenger receptor cysteine rich family, 5 domains	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50604679-2	chr9	50604179	50605179	+	784.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025848)	promoter-TSS (NM_025848)	778.0	NM_013897	30057.0	Mm.335149	NM_013897	ENSMUSG00000039016	Timm8b	Tim8b	translocase of inner mitochondrial membrane 8B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119263117-1	chr2	119262617	119263617	+	784.0	f0_balb.idr	Intergenic	Intergenic	8109.0	NM_145530	228543.0	Mm.120274	NM_145530	ENSMUSG00000034226	Rhov	A030005A06Rik|Arhv	ras homolog family member V	protein-coding	0.0	0.5	1.0	0.0	1.5	7.0
Merged-chr1-57378155-1	chr1	57377655	57378655	+	784.0	f0_c57.idr	promoter-TSS (NR_037999)	promoter-TSS (NR_037999)	535.0	NM_028546	73467.0	Mm.263673	NM_028546	ENSMUSG00000038323	1700066M21Rik	AI428479	RIKEN cDNA 1700066M21 gene	protein-coding	37.0	91.5	90.0	54.5	79.0	51.0
Merged-chr4-75318337-3	chr4	75317844	75318844	+	784.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-40052.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123234895-1	chr8	123234395	123235395	+	784.0	f1_balb.idr	promoter-TSS (NR_045849)	promoter-TSS (NR_045849)	-196.0	NR_045849	71186.0	Mm.449984	NR_045849	ENSMUSG00000097637	4933417D19Rik	-	RIKEN cDNA 4933417D19 gene	ncRNA	0.0	1.5	5.0	0.0	0.0	1.5
Merged-chr6-113166972-2	chr6	113166472	113167472	+	784.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28412.0	NM_177763	269788.0	Mm.37943	NM_177763	ENSMUSG00000042873	Lhfpl4	1190004M23Rik|AI604880|B230384L07|mKIAA4027	lipoma HMGIC fusion partner-like protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-30676329-3	chr11	30675843	30676843	+	784.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	MamRep1527|LTR|LTR	-26947.0	NM_029344	75572.0	Mm.390319	NM_029344	ENSMUSG00000060923	Acyp2	2310004B09Rik	acylphosphatase 2, muscle type	protein-coding	0.0	1.0	3.0	0.0	2.0	3.5
Merged-chr3-158035683-2	chr3	158035183	158036183	+	784.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289524)	promoter-TSS (NM_001289524)	956.0	NM_001093752	69207.0	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23585556-2	chr13	23585056	23586056	+	784.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001290530)	TTS (NM_001290530)	414.0	NM_001290530	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173739294-2	chr1	173738791	173739791	+	784.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204910, intron 1 of 7)	intron (NM_001204910, intron 1 of 7)	2518.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	93.0	172.0	86.0	63.5	148.5	77.0
Merged-chr10-118126913-2	chr10	118126416	118127416	+	784.0	f0_balb.idr|f1_balb.idr	Intergenic	URR1B|DNA|hAT-Charlie	-14871.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	3.5	8.5	0.5	13.5	14.5	5.0
Merged-chr2-76980322-2	chr2	76979822	76980822	+	784.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028004, intron 1 of 191)	intron (NM_028004, intron 1 of 191)	2225.0	NM_028004	22138.0	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85651388-1	chr8	85650888	85651888	+	784.0	f1_balb.idr	intron (NM_001357288, intron 6 of 8)	L1MA5|LINE|L1	39621.0	NM_001081324	74513.0	Mm.126079	NM_001081324	ENSMUSG00000036902	Neto2	5530601C23Rik|AI854825|BTCL2	neuropilin (NRP) and tolloid (TLL)-like 2	protein-coding	1.5	6.0	0.5	3.0	0.0	0.5
Merged-chr11-106271643-2	chr11	106271143	106272143	+	784.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130187, intron 1 of 12)	intron (NM_001130187, intron 1 of 12)	1329.0	NM_001130187	83796.0	Mm.21772	NM_031878	ENSMUSG00000078619	Smarcd2	AW322457|Baf60b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111050446-1	chr10	111049946	111050946	+	784.0	f0_balb.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-40380.0	NM_172554	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	7.0	0.0	1.5	9.5	1.0	0.5
Merged-chr2-153446286-2	chr2	153445786	153446786	+	784.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134300, intron 4 of 10)	intron (NM_001134300, intron 4 of 10)	-1807.0	NM_001001986	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17794971-2	chr12	17794471	17795471	+	784.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	104162.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	8.5	7.5	3.5	1.0	5.5	1.5
Merged-chr11-3291760-2	chr11	3291260	3292260	+	784.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001253691, exon 1 of 5)	exon (NM_001253691, exon 1 of 5)	1303.0	NM_019574	56218.0	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142060412-3	chr7	142059905	142060905	+	784.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001347560, exon 1 of 5)	5' UTR (NM_001347560, exon 1 of 5)	448.0	NM_001347560	101513.0	Mm.53259	NM_028308	ENSMUSG00000025147	Mob2	1110017M21Rik|2700078K21Rik|AI256456|Mmh	MOB kinase activator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-83002395-2	chr3	83001899	83002899	+	784.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-5325.0	NM_133862	99571.0	Mm.16422	NM_133862	ENSMUSG00000033860	Fgg	3010002H13Rik|AI256424	fibrinogen gamma chain	protein-coding	8.5	0.0	2.5	0.0	1.0	0.0
Merged-chr16-38406918-4	chr16	38406391	38407391	+	784.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134102, intron 7 of 10)	intron (NM_134102, intron 7 of 10)	26254.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	0.0	0.0	2.0	0.0	0.0	2.0
Merged-chr2-120567094-1	chr2	120566594	120567594	+	784.0	f1_balb.idr	promoter-TSS (NM_001177793)	promoter-TSS (NM_001177793)	-577.0	NM_001177792	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	38.0	115.5	93.0	28.5	126.0	87.5
Merged-chr5-24396389-2	chr5	24395889	24396889	+	784.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029020, intron 1 of 15)	B2_Mm1a|SINE|B2	2233.0	NM_029020	74610.0	Mm.283914	NM_029020	ENSMUSG00000028973	Abcb8	4833412N02Rik|AA409895	ATP-binding cassette, sub-family B (MDR/TAP), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62129985-2	chr15	62129485	62130485	+	784.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 2 of 6)	intron (NR_132746, intron 2 of 6)	89466.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114660138-3	chr6	114659644	114660644	+	784.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 2 of 19)	intron (NM_001253718, intron 2 of 19)	17047.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83323101-2	chr17	83322601	83323601	+	784.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27830.0	NM_001114361	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-123025650-2	chr7	123025150	123026150	+	784.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	55086.0	NM_175023	19647.0	Mm.4480	NM_011247	ENSMUSG00000030779	Rbbp6	4933422O15Rik|AI316869|BB233631|C030034J04Rik|C77662|P2P-R|PACT	retinoblastoma binding protein 6, ubiquitin ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146150681-2	chr3	146150181	146151181	+	784.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 1 of 13)	intron (NM_001005846, intron 1 of 13)	507.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32895606-1	chr12	32895106	32896106	+	784.0	f1_c57bl6.idr	Intergenic	Intergenic	58183.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr8-75315948-2	chr8	75315448	75316448	+	784.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102004.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152397105-7	chr2	152396560	152397560	+	784.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011438, exon 1 of 1)	exon (NM_011438, exon 1 of 1)	986.0	NM_011438	20667.0	Mm.28424	NM_011438	ENSMUSG00000051817	Sox12	2010205A02Rik	SRY (sex determining region Y)-box 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55726535-2	chr14	55726035	55727035	+	784.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-4272.0	NM_001360387	56187.0	Mm.87216	NM_019519	ENSMUSG00000040472	Rabggta	gm	Rab geranylgeranyl transferase, a subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166674848-3	chr2	166674346	166675346	+	784.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	GC_rich|Low_complexity|Low_complexity	38986.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76205652-2	chr16	76205152	76206152	+	784.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	83039.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89591500-1	chr15	89591000	89592000	+	784.0	f1_balb.idr	intron (NM_026817, intron 1 of 8)	CpG	423.0	NM_026817	68708.0	Mm.23258	NM_026817	ENSMUSG00000022621	Rabl2	1110031N17Rik|AW549303|Rabl2a	RAB, member RAS oncogene family-like 2	protein-coding	0.0	1.0	3.5	0.0	0.5	2.0
Merged-chr7-92977637-4	chr7	92977158	92978158	+	783.983337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102221.0	NM_021427	58238.0	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	0.0	6.0	0.0	0.0	3.5	1.0
Merged-chr6-28833441-5	chr6	28832967	28833967	+	783.97998	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 16 of 23)	CpG	-1720.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55810417-3	chr16	55809916	55810916	+	783.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001159394)	TTS (NM_001159394)	11722.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100608491-3	chr7	100608023	100609023	+	783.916687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153424)	promoter-TSS (NR_153424)	-222.0	NR_003559	52443.0	Mm.473730	NM_198831	ENSMUSG00000030706	Mrpl48	1810030E20Rik|2610028L11Rik|CGI-118|D4Ertd786e|L48mt|MRP-L48	mitochondrial ribosomal protein L48	protein-coding	31.0	51.0	39.0	16.0	48.0	22.0
Merged-chr7-128115708-2	chr7	128115208	128116208	+	783.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_008401, intron 24 of 29)	intron (NM_008401, intron 24 of 29)	-13860.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118760025-3	chr2	118759525	118760525	+	783.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001982, intron 5 of 10)	intron (NM_001001982, intron 5 of 10)	2636.0	NM_001001982	214239.0	Mm.379342	NM_001001982	ENSMUSG00000045838	A430105I19Rik	Ccdc9b|Gm353	RIKEN cDNA A430105I19 gene	protein-coding	0.0	2.5	2.5	0.0	0.0	0.5
Merged-chr6-121210778-4	chr6	121210333	121211333	+	783.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017379)	promoter-TSS (NM_017379)	99.0	NM_017379	53857.0	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70247298-2	chr12	70246798	70247798	+	783.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110202, intron 11 of 11)	intron (NM_001110202, intron 11 of 11)	19457.0	NR_045174	414124.0	Mm.416164	NR_045174	ENSMUSG00000085298	F730035M05Rik	-	RIKEN cDNA F730035M05 gene	ncRNA	3.5	2.0	2.5	0.0	8.0	0.5
Merged-chr3-89422806-4	chr3	89422373	89423373	+	783.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011368, intron 2 of 12)	intron (NM_011368, intron 2 of 12)	1252.0	NM_001113331	20416.0	Mm.86595	NM_011368	ENSMUSG00000042626	Shc1	Shc|ShcA|p66|p66shc	src homology 2 domain-containing transforming protein C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40191566-2	chr10	40191066	40192066	+	783.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49312.0	NM_001114332	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-99044356-2	chr14	99043856	99044856	+	783.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175245, intron 1 of 2)	intron (NM_175245, intron 1 of 2)	1780.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-48618862-2	chr9	48618362	48619362	+	783.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13739.0	NM_001311062	18113.0	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	5.5	0.5	0.0	7.0	2.0	0.0
Merged-chr7-118536056-2	chr7	118535556	118536556	+	783.833313	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172476, exon 16 of 16)	3' UTR (NM_172476, exon 16 of 16)	-2700.0	NM_009940	12850.0	Mm.20634	NM_009940	ENSMUSG00000030652	Coq7	clk-1	demethyl-Q 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121813051-4	chr5	121812593	121813593	+	783.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359153, intron 22 of 23)	intron (NM_001359153, intron 22 of 23)	6180.0	NR_105998	102465624.0		NR_105998	ENSMUSG00000099063	Mir7031	Gm27859|mmu-mir-7031	microRNA 7031	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9116774-3	chr13	9116271	9117271	+	783.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 1 of 17)	intron (NM_172585, intron 1 of 17)	22890.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101003265-3	chr11	101002756	101003756	+	783.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6196.0	NM_016920	11975.0	Mm.340818	NM_016920	ENSMUSG00000019302	Atp6v0a1	AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1	ATPase, H+ transporting, lysosomal V0 subunit A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30364820-3	chr16	30364332	30365332	+	783.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128096, intron 3 of 33)	intron (NM_001128096, intron 3 of 33)	23698.0	NM_001128094	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-69675498-3	chr18	69674991	69675991	+	783.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 15 of 19)	T-rich|Low_complexity|Low_complexity	-250068.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104108073-5	chr8	104107589	104108589	+	783.82666	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 1 of 11)	(GA)n|Simple_repeat|Simple_repeat	-2216.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110373227-4	chr11	110372729	110373729	+	783.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1b|LINE|L1	-25873.0	NM_001356345	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	2.5	0.0	2.5	0.0	1.5	1.0
Merged-chr9-55283749-3	chr9	55283241	55284241	+	783.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_032002)	promoter-TSS (NM_032002)	-116.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8276857-3	chr17	8276353	8277353	+	783.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6960.0	NM_018819	55951.0	Mm.288510	NM_018819	ENSMUSG00000023861	Mpc1	0610006G08Rik|3830411I18Rik|Brp44l	mitochondrial pyruvate carrier 1	protein-coding	3.5	14.5	9.0	12.5	10.0	1.0
Merged-chr3-106782173-4	chr3	106781685	106782685	+	783.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007651, intron 1 of 7)	Lx6|LINE|L1	7964.0	NM_007651	12508.0	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141176378-4	chr7	141175873	141176873	+	783.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3522.0	NM_001172100	107702.0	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127794429-2	chr3	127793924	127794924	+	783.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356430, intron 2 of 2)	ORR1D1|LTR|ERVL-MaLR	3767.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	9.5	17.0	28.0	26.0	68.5	24.0
Merged-chr9-107974677-2	chr9	107974177	107975177	+	783.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023738)	promoter-TSS (NM_023738)	-890.0	NM_023738	74153.0	Mm.277125	NM_023738	ENSMUSG00000032596	Uba7	1300004C08Rik|Ube1l	ubiquitin-like modifier activating enzyme 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33928838-2	chr16	33928338	33929338	+	783.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	38200.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-7154062-2	chr4	7153562	7154562	+	783.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-163339.0	NM_145711	252838.0	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding	0.0	3.5	1.5	7.5	4.0	4.0
Merged-chr17-5629008-2	chr17	5628508	5629508	+	783.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	136408.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47471010-2	chr9	47470510	47471510	+	783.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59160.0	NM_001310841	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25809069-3	chr17	25808561	25809561	+	783.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164225)	promoter-TSS (NM_001164225)	-24.0	NM_001164225	214931.0	Mm.152289	NM_001164225	ENSMUSG00000025738	Fbxl16	BC042620|Scirr1	F-box and leucine-rich repeat protein 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-54666156-3	chr1	54665660	54666660	+	783.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 18 of 27)	intron (NM_001081433, intron 18 of 27)	-108476.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111653693-4	chr8	111653207	111654207	+	783.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358993, intron 1 of 3)	intron (NM_001358993, intron 1 of 3)	10264.0	NM_011742	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102282010-1	chr11	102281510	102282510	+	783.666687	f1_balb.idr	Intergenic	B2_Mm1a|SINE|B2	-2810.0	NM_001302506	72053.0	Mm.101274	NM_028076	ENSMUSG00000034757	Tmub2	2010008E23Rik	transmembrane and ubiquitin-like domain containing 2	protein-coding	0.0	3.5	1.0	0.0	0.0	0.0
Merged-chr11-70441556-2	chr11	70441056	70442056	+	783.666687	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001271360)	TTS (NM_001271360)	3301.0	NR_106064	102465670.0		NR_106064	ENSMUSG00000099109	Mir7115	Gm27902|mmu-mir-7115	microRNA 7115	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81495693-3	chr10	81495223	81496223	+	783.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134009, intron 1 of 13)	intron (NM_134009, intron 1 of 13)	640.0	NM_134009	103425.0	Mm.302791	NM_134009	ENSMUSG00000020238	Ncln	3100002P13Rik|AW120537	nicalin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3699482-3	chr4	3698991	3699991	+	783.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	-15473.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108284073-4	chr3	108283522	108284522	+	783.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271599)	promoter-TSS (NM_001271599)	-42.0	NM_001271599	20661.0	Mm.157119	NM_019972	ENSMUSG00000068747	Sort1	2900053A11Rik|AI852375|Ntr3|Ntsr3	sortilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95818193-3	chr3	95817688	95818688	+	783.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081293, intron 1 of 10)	intron (NM_001081293, intron 1 of 10)	765.0	NM_001081293	75137.0	Mm.196275	NM_028328	ENSMUSG00000028106	Rprd2	2810036A19Rik|4930535B03Rik|6720469I21Rik|AL022841|AL022940|AU021304|BB077382|mKIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding	1.5	11.5	11.0	1.5	13.0	11.0
Merged-chr11-22370615-1	chr11	22370115	22371115	+	783.666687	f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-83820.0	NM_001252515	216565.0	Mm.491265	NM_153078	ENSMUSG00000042302	Ehbp1	AF424697|Flj21950|NACSIN	EH domain binding protein 1	protein-coding	14.5	4.0	4.0	0.0	8.0	1.0
Merged-chr14-79541812-3	chr14	79541319	79542319	+	783.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 2 of 8)	ORR1C1|LTR|ERVL-MaLR	26145.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65530892-3	chr3	65530430	65531430	+	783.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178892, intron 1 of 5)	intron (NM_178892, intron 1 of 5)	-1516.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	1.0	1.5	3.0	0.0	4.5	8.5
Merged-chr14-29980647-3	chr14	29980165	29981165	+	783.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027493, intron 1 of 12)	intron (NM_027493, intron 1 of 12)	2328.0	NM_027493	56249.0	Mm.215110	NM_027493	ENSMUSG00000015971	Actr8	5730542K05Rik|ARP8	ARP8 actin-related protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-174469873-2	chr1	174469373	174470373	+	783.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	21248.0	NM_207694	546747.0	Mm.380253	NM_207694	ENSMUSG00000066671	Olfr220	EG546747|MOR103-13P|MOR103-17|Olfr220-ps1|Olfr413-ps1	olfactory receptor 220	protein-coding	5.0	6.5	11.0	9.5	6.0	0.0
Merged-chr2-83676671-2	chr2	83676166	83677166	+	783.666626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	32088.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	11.5	2.5	4.0	1.0	8.5	9.5
Merged-chr13-29650810-4	chr13	29650378	29651378	+	783.608337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131896, intron 8 of 16)	L1MEc|LINE|L1	204795.0	NR_131896	68916.0	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21174240-4	chr19	21173766	21174766	+	783.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69556.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38239380-4	chr18	38238870	38239870	+	783.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027904, intron 1 of 1)	CpG	10828.0	NR_015475	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	2.0	0.0	1.0	0.0	0.0	1.0
Merged-chr6-142779541-4	chr6	142779047	142780047	+	783.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	22861.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91905473-4	chr16	91904995	91905995	+	783.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010587, exon 34 of 39)	exon (NM_010587, exon 34 of 39)	26135.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-166730402-4	chr1	166729909	166730909	+	783.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-48564.0	NM_001347135	240894.0	Mm.246610	NM_172844	ENSMUSG00000026560	Fmo9	4831428F09Rik	flavin containing monooxygenase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38290320-3	chr15	38289827	38290827	+	783.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9573.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132285912-3	chr2	132285422	132286422	+	783.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291039)	promoter-TSS (NM_001291039)	-17.0	NM_001291039	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52242675-4	chr3	52242173	52243173	+	783.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	-25664.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0.0	4.0	2.5	1.0	6.0	0.0
Merged-chr7-135558057-2	chr7	135557562	135558562	+	783.541626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316678, intron 1 of 19)	intron (NM_001316678, intron 1 of 19)	-8100.0	NR_035488	100316818.0		NR_035488	ENSMUSG00000088141	Mir1962	mir-1962|mmu-mir-1962	microRNA 1962	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79646471-4	chr2	79645996	79646996	+	783.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080558, intron 8 of 17)	intron (NM_080558, intron 8 of 17)	11071.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	10.5	13.5	0.0	3.0	3.0	1.5
Merged-chr5-67943377-4	chr5	67942907	67943907	+	783.520813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038182)	promoter-TSS (NR_038182)	-326.0	NR_038182	73865.0	Mm.66946	NR_038182	ENSMUSG00000106880	4930425K10Rik	-	RIKEN cDNA 4930425K10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-32900821-2	chr13	32900321	32901321	+	783.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER70-int|LTR|ERVL	-2681.0	NM_173051	380839.0	Mm.250802	NM_173051	ENSMUSG00000079049	Serpinb1c	EIC|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1c	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40079393-2	chr10	40078893	40079893	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 2 of 5)	intron (NM_001114332, intron 2 of 5)	-54125.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58461470-2	chr16	58460970	58461970	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356484, intron 13 of 15)	intron (NM_001356484, intron 13 of 15)	52935.0	NM_028523	73379.0	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67394134-3	chr5	67393637	67394637	+	783.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164806, exon 5 of 5)	3' UTR (NM_001164806, exon 5 of 5)	33662.0	NM_001164806	666938.0	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	4.5	0.0	0.0	4.5	0.0	0.5
Merged-chr8-117466021-2	chr8	117465521	117466521	+	783.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6756.0	NR_106046	102465653.0		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8775254-2	chr19	8774754	8775754	+	783.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028418)	promoter-TSS (NR_028418)	769.0	NR_015538	100039957.0	Mm.220886	NR_015538		Gm2518	D630022E15Rik	interferon induced transmembrane protein 2 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108596183-3	chr8	108595677	108596677	+	783.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11500.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46351009-2	chr4	46350509	46351509	+	783.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6815.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	4.5	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184022597-2	chr1	184022097	184023097	+	783.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B2|LTR|ERVL	11401.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	0.0	21.0	4.0	4.5	3.5	11.0
Merged-chr4-101419456-3	chr4	101418866	101419866	+	783.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177602)	promoter-TSS (NM_001177602)	45.0	NM_001177604	11639.0	Mm.42040	NM_009647	ENSMUSG00000028527	Ak4	AK 4|Ak-3|Ak-4|Ak3|Ak3l1|D4Ertd274e	adenylate kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-73571222-2	chr18	73570722	73571722	+	783.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1483.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4254895-3	chr18	4254374	4255374	+	783.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89042.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-33157494-2	chr12	33156994	33157994	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028139, intron 2 of 3)	intron (NM_028139, intron 2 of 3)	9808.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11887587-2	chr11	11887087	11888087	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190448, intron 1 of 14)	intron (NM_001190448, intron 1 of 14)	2821.0	NM_016672	13195.0	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124038068-2	chr5	124037568	124038568	+	783.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-5808.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	9.0	22.5	6.0	2.5	10.0	5.0
Merged-chr17-56326943-2	chr17	56326443	56327443	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172132, intron 1 of 22)	intron (NM_172132, intron 1 of 22)	893.0	NM_001357909	193796.0	Mm.45047	NM_172132	ENSMUSG00000024201	Kdm4b	4732474L06Rik|Jmjd2b	lysine (K)-specific demethylase 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-46066360-2	chr10	46065860	46066860	+	783.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	-178388.0	NR_028274	100302593.0		NR_028274	ENSMUSG00000095118	Snord14d	Gm23710	small nucleolar RNA, C/D box 14D	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139240546-1	chr4	139240046	139241046	+	783.5	f0_balb.idr	intron (NM_001037761, intron 2 of 9)	intron (NM_001037761, intron 2 of 9)	46435.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	9.0	34.0	14.0	16.5	40.5	20.0
Merged-chr4-55356113-2	chr4	55355572	55356572	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009011, intron 1 of 9)	ORR1D2|LTR|ERVL-MaLR	6030.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	10.0	16.5	30.5	12.0	26.5	14.0
Merged-chr7-118996351-4	chr7	118995817	118996817	+	783.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1106.0	NM_001195774	64297.0	Mm.103439	NM_022420	ENSMUSG00000008734	Gprc5b	AW125761|Raig2	G protein-coupled receptor, family C, group 5, member B	protein-coding	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128064362-2	chr7	128063862	128064862	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008401, intron 1 of 29)	ID_B1|SINE|B4	1722.0	NM_008401	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90889674-2	chr2	90889174	90890174	+	783.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026161, exon 2 of 2)	exon (NM_026161, exon 2 of 2)	3888.0	NM_026161	67445.0	Mm.258993	NM_026161	ENSMUSG00000040794	C1qtnf4	0710001E10Rik|9430004J15Rik|CTRP4	C1q and tumor necrosis factor related protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102675466-2	chr2	102674962	102675962	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077514, intron 1 of 10)	intron (NM_001077514, intron 1 of 10)	16773.0	NM_001361018	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	2.0	0.0	3.5	0.0	0.0	2.0
Merged-chr16-24427052-2	chr16	24426552	24427552	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 1 of 12)	RMER15|LTR|ERVL	-21039.0	NM_001145952	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-54713798-2	chr5	54713278	54714278	+	783.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	363786.0	NR_038045	330086.0	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13	predicted gene 10440	ncRNA	2.0	0.0	0.0	0.0	0.0	1.0
Merged-chr7-120677936-2	chr7	120677436	120678436	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164580, intron 1 of 2)	intron (NM_001164580, intron 1 of 2)	316.0	NM_001164580	233812.0	Mm.276479	NM_001164580	ENSMUSG00000046096	Mosmo	Atthog	modulator of smoothened	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140738454-3	chr5	140737981	140738981	+	783.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	B4A|SINE|B4	14354.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120741773-2	chr8	120741273	120742273	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301811, intron 2 of 8)	intron (NM_001301811, intron 2 of 8)	3134.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-97904887-2	chr16	97904387	97905387	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_174847, intron 2 of 13)	intron (NM_174847, intron 2 of 13)	17746.0	NM_174847	207781.0	Mm.1465	NM_174847	ENSMUSG00000045975	C2cd2	5730563M15|5830404H04Rik|AI314146|AI449533|BF168443|ORF25|mKIAA4045	C2 calcium-dependent domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85556692-2	chr8	85556192	85557192	+	783.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1421.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	25.5	52.5	40.5	25.5	52.0	45.0
Merged-chr17-5598728-2	chr17	5598228	5599228	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	B4A|SINE|B4	106128.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120858392-1	chr9	120857892	120858892	+	783.5	f0_balb.idr	Intergenic	MTEa|LTR|ERVL-MaLR	56858.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117436855-2	chr8	117436355	117437355	+	783.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163262, exon 10 of 21)	exon (NM_001163262, exon 10 of 21)	-16168.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180957814-2	chr1	180957314	180958314	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144794, intron 8 of 22)	intron (NM_144794, intron 8 of 22)	15296.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-147092152-2	chr6	147091652	147092652	+	783.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081237, exon 1 of 3)	exon (NM_001081237, exon 1 of 3)	1077.0	NM_001081237	232539.0	Mm.491206	NM_001081237	ENSMUSG00000040102	Klhl42	A330079N23Rik|AI450355|C230080I20Rik|Ctb9|Klhdc5|mKIAA1340	kelch-like 42	protein-coding	3.0	16.5	2.0	0.0	11.5	5.5
Merged-chr13-20789407-1	chr13	20788907	20789907	+	783.5	f1_c57bl6.idr	Intergenic	Intergenic	-4706.0	NM_001281854	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.5	2.5	0.0	0.0	0.0	4.0
Merged-chr8-71489135-2	chr8	71488626	71489626	+	783.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_032544, exon 2 of 9)	exon (NM_032544, exon 2 of 9)	1023.0	NM_032544	70359.0	Mm.142112	NM_032544	ENSMUSG00000007610	Gtpbp3	2410009F13Rik|AI607903	GTP binding protein 3	protein-coding	6.5	21.0	38.5	14.0	15.0	24.0
Merged-chr14-31608546-2	chr14	31608046	31609046	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019975, intron 16 of 16)	intron (NM_019975, intron 16 of 16)	-31163.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79991235-2	chr10	79990735	79991735	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007725, intron 1 of 6)	intron (NM_007725, intron 1 of 6)	2635.0	NM_007725	12798.0	Mm.157770	NM_007725	ENSMUSG00000004665	Cnn2	AA408047|AI324678|Calpo2	calponin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158139644-2	chr2	158139144	158140144	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 2 of 12)	intron (NM_009373, intron 2 of 12)	6748.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.0	2.0	1.0	0.0	7.0	0.0
Merged-chr18-20704664-2	chr18	20704164	20705164	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 4 of 8)	intron (NM_019737, intron 4 of 8)	-39404.0	NR_155534	102633478.0		NR_155534	ENSMUSG00000085595	Gm16090	-	predicted gene 16090	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102015061-4	chr7	102014566	102015566	+	783.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133947)	TTS (NM_133947)	3089.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	12.0	20.0	10.5	1.5	6.0	14.0
Merged-chr5-108032001-4	chr5	108031494	108032494	+	783.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-33680.0	NM_001359088	17765.0	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	0.5	0.5	0.0	0.0	12.5	1.5
Merged-chr7-144907186-4	chr7	144906681	144907681	+	783.454163	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7919.0	NM_001357868	72284.0	Mm.273049	NM_028184	ENSMUSG00000031072	Oraov1	2210010N10Rik|TAOS1	oral cancer overexpressed 1	protein-coding	5.5	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138041283-3	chr4	138040756	138041756	+	783.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355699, intron 1 of 32)	B3A|SINE|B2	43431.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	41.5	95.5	84.0	40.0	124.5	80.0
Merged-chr19-37602442-5	chr19	37601984	37602984	+	783.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175353, intron 17 of 21)	intron (NM_175353, intron 17 of 21)	52066.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	6.0	4.5	4.0	8.0	4.5	10.0
Merged-chr6-83087310-3	chr6	83086869	83087869	+	783.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010692, intron 1 of 1)	intron (NM_010692, intron 1 of 1)	1004.0	NM_010692	16815.0	Mm.20359	NM_010692	ENSMUSG00000034968	Lbx2	Lbx2h	ladybird homeobox 2	protein-coding	27.0	44.0	19.5	1.0	30.5	14.0
Merged-chr6-124661363-4	chr6	124660855	124661855	+	783.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-1749.0	NR_149320	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-86463945-4	chr10	86463448	86464448	+	783.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013722, intron 2 of 13)	intron (NM_013722, intron 2 of 13)	34948.0	NM_001164495	27204.0	Mm.394931	NM_013722	ENSMUSG00000059602	Syn3	-	synapsin III	protein-coding	8.5	7.0	2.5	7.0	1.5	0.0
Merged-chr12-79797236-4	chr12	79796729	79797729	+	783.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 9 of 10)	intron (NM_009014, intron 9 of 10)	127504.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132305980-3	chr7	132305478	132306478	+	783.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029935, intron 1 of 7)	intron (NM_029935, intron 1 of 7)	-9686.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-33965775-3	chr6	33965280	33966280	+	783.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 17 of 17)	intron (NM_009148, intron 17 of 17)	-63668.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45405907-2	chr7	45405407	45406407	+	783.375	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010596)	promoter-TSS (NM_010596)	-53.0	NM_010596	16495.0	Mm.12955	NM_010596	ENSMUSG00000038201	Kcna7	Kv1.7	potassium voltage-gated channel, shaker-related subfamily, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60908254-4	chr18	60907771	60908771	+	783.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3969.0	NM_001038499	545260.0	Mm.20147	NM_001038499	ENSMUSG00000036412	Arsi	BC020108	arylsulfatase i	protein-coding	4.0	4.5	1.0	15.5	0.0	1.0
Merged-chr7-121706757-4	chr7	121706187	121707187	+	783.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033173, exon 1 of 16)	exon (NM_001033173, exon 1 of 16)	566.0	NM_001033173	76179.0	Mm.122538	NM_001033173	ENSMUSG00000063317	Usp31	6330567E21Rik|mKIAA1203	ubiquitin specific peptidase 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16097157-4	chr7	16096642	16097642	+	783.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347559)	TTS (NM_001347559)	-1438.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	9.5	1.0	1.0	1.5	11.0	4.5
Merged-chr2-131939656-2	chr2	131939156	131940156	+	783.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001278259, intron 2 of 4)	intron (NM_001278259, intron 2 of 4)	-11205.0	NM_001278257	26434.0	Mm.180750	NM_023043	ENSMUSG00000027338	Prnd	AI450264|Dpl|PrPLP|doppel	prion like protein doppel	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167016329-2	chr2	167015829	167016829	+	783.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_153065, intron 1 of 20)	intron (NM_153065, intron 1 of 20)	1016.0	NM_153065	228889.0	Mm.295031	NM_153065	ENSMUSG00000017999	Ddx27	C86129	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60735360-2	chr13	60734827	60735827	+	783.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 17 of 26)	intron (NM_134062, intron 17 of 26)	51037.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	4.0	8.0	2.0	2.0	8.0	7.5
Merged-chr7-3302209-2	chr7	3301648	3302648	+	783.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1384.0	NM_001291434	18752.0	Mm.7980	NM_011102	ENSMUSG00000078816	Prkcg	PKCgamma|Pkcc|Prkcc	protein kinase C, gamma	protein-coding	1.5	1.0	5.0	0.0	0.0	0.0
Merged-chr5-145200620-3	chr5	145200136	145201136	+	783.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023322, intron 1 of 2)	B3A|SINE|B2	1246.0	NM_023322	67235.0	Mm.432480	NM_023322	ENSMUSG00000029627	Zkscan14	2310046C23Rik|2810437E14Rik|Zfp99|Znf394	zinc finger with KRAB and SCAN domains 14	protein-coding	0.5	10.5	6.5	1.0	3.5	1.5
Merged-chr11-106612181-2	chr11	106611681	106612681	+	783.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_198292, intron 1 of 11)	intron (NM_198292, intron 1 of 11)	749.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7814084-4	chr9	7813583	7814583	+	783.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	22723.0	NM_001291503	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75183037-1	chr14	75182537	75183537	+	783.333313	f0_balb.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	46612.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84203340-3	chr17	84202874	84203874	+	783.31665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 36 of 37)	intron (NM_183021, intron 36 of 37)	-15427.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88718833-2	chr10	88718333	88719333	+	783.3000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	12268.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30042773-2	chr2	30042273	30043273	+	783.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008498, intron 1 of 8)	intron (NM_001008498, intron 1 of 8)	6106.0	NM_001008498	71820.0	Mm.88053	NM_001008498	ENSMUSG00000039715	Wdr34	3200002I06Rik	WD repeat domain 34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114896722-3	chr11	114896233	114897233	+	783.299988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170758, intron 3 of 6)	intron (NM_170758, intron 3 of 6)	6692.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38296110-4	chr2	38295617	38296617	+	783.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-8733.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118546773-3	chr2	118546296	118547296	+	783.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_138313, exon 3 of 5)	exon (NM_138313, exon 3 of 5)	803.0	NM_001331221	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	7.0	7.5	7.0	1.5	7.5	8.5
Merged-chr7-19876319-6	chr7	19875817	19876817	+	783.266663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177036, exon 7 of 7)	3' UTR (NM_177036, exon 7 of 7)	11648.0	NM_177036	319930.0	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32932766-4	chr19	32932266	32933266	+	783.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	175189.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89160752-2	chr15	89160252	89161252	+	783.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_138749, exon 22 of 38)	exon (NM_138749, exon 22 of 38)	2156.0	NR_106066	102465672.0		NR_106066	ENSMUSG00000106328	Mir7118	mmu-mir-7118	microRNA 7118	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147350802-2	chr4	147350302	147351302	+	783.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	174936.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31005717-2	chr17	31005203	31006203	+	783.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_177465, intron 20 of 21)	MLT1C|LTR|ERVL-MaLR	51020.0	NM_177465	52020.0	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	5.0	10.5	5.0	10.5	40.0	8.5
Merged-chr10-19593635-2	chr10	19593135	19594135	+	783.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_010511, intron 1 of 6)	intron (NM_010511, intron 1 of 6)	1686.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	4.5	50.0	9.0	2.5	17.0	16.0
Merged-chr12-84755645-4	chr12	84755307	84756307	+	783.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023409, exon 4 of 4)	3' UTR (NM_023409, exon 4 of 4)	17305.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24477601-2	chr17	24477166	24478166	+	783.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_019988, intron 4 of 8)	intron (NM_019988, intron 4 of 8)	1412.0	NM_001252464	56716.0	Mm.289516	NM_019988	ENSMUSG00000024142	Mlst8	0610033N12Rik|AA409454|AI505104|AI851821|Gbl	MTOR associated protein, LST8 homolog (S. cerevisiae)	protein-coding	2.0	1.0	2.0	5.0	14.0	1.0
Merged-chr4-116821118-4	chr4	116820616	116821616	+	783.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_146256, exon 1 of 1)	exon (NM_146256, exon 1 of 1)	392.0	NM_146256	242642.0	Mm.279897	NM_146256	ENSMUSG00000043155	Hpdl	A830048M07Rik|BC034099|Gloxd1	4-hydroxyphenylpyruvate dioxygenase-like	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr10-80569153-2	chr10	80568653	80569653	+	783.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_078477, exon 2 of 2)	exon (NM_078477, exon 2 of 2)	-7593.0	NM_025852	66932.0	Mm.1116	NM_025852	ENSMUSG00000047417	Rexo1	1700021P10Rik|2610511M11Rik|AW050347|EloA-BP1|Rex1|Tceb3bp1	REX1, RNA exonuclease 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-109552223-3	chr5	109551727	109552727	+	783.244446	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6766.0	NM_016715	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	5.5	1.0	2.5	5.0	2.5	0.0
Merged-chr8-107572738-3	chr8	107572233	107573233	+	783.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	15749.0	NM_010817	17463.0	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72550856-3	chr6	72550373	72551373	+	783.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271395, intron 1 of 9)	L3|LINE|CR1	1226.0	NM_001271395	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34236588-2	chr11	34236088	34237088	+	783.208374	f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 46 of 51)	intron (NM_033374, intron 46 of 51)	-28499.0	NM_023907	14233.0	Mm.32926	NM_023907	ENSMUSG00000047861	Foxi1	5830401E05Rik|FREAC6|Fkh10|HFH-3|Hfh3	forkhead box I1	protein-coding	2.5	5.0	2.5	0.0	0.0	1.5
Merged-chr8-105304118-4	chr8	105303611	105304611	+	783.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148952, intron 7 of 9)	intron (NM_148952, intron 7 of 9)	-1490.0	NM_172760	234683.0	Mm.237966	NM_172760	ENSMUSG00000014791	Elmo3	9930107J06|BC058752|CED-12|Ced12	engulfment and cell motility 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-70933666-3	chr13	70933189	70934189	+	783.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50741.0	NM_029873	77166.0	Mm.159859	NM_029873	ENSMUSG00000021600	8030423J24Rik	-	RIKEN cDNA 8030423J24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-3202449-3	chr15	3201950	3202950	+	783.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68317.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-15998332-3	chr19	15997834	15998834	+	783.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045355, intron 2 of 2)	intron (NR_045355, intron 2 of 2)	13259.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15816549-2	chr17	15816049	15817049	+	783.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_178615, intron 2 of 2)	RSINE1|SINE|B4	10037.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70486742-2	chr11	70486242	70487242	+	783.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18532.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108570776-2	chr3	108570276	108571276	+	783.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025444)	promoter-TSS (NM_025444)	-923.0	NM_025444	99730.0	Mm.24431	NM_025444	ENSMUSG00000048100	Taf13	1810004N01Rik|2010309N11Rik|AI847295|TAFII18	TATA-box binding protein associated factor 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106576010-3	chr8	106575517	106576517	+	783.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11126.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170854387-3	chr1	170853879	170854879	+	783.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 2 of 15)	RMER17A|LTR|ERVK	13392.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-150107751-3	chr5	150107243	150108243	+	783.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89068.0	NM_001289566	140498.0	Mm.444643	NM_080468	ENSMUSG00000053368	Rxfp2	Gpr106|Great|Lgr8	relaxin/insulin-like family peptide receptor 2	protein-coding	1.0	3.5	0.0	1.0	0.0	0.5
Merged-chr3-107099761-4	chr3	107099278	107100278	+	783.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-1789.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	27.0	72.0	82.5	21.5	84.0	64.5
Merged-chr11-114523483-4	chr11	114522997	114523997	+	783.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74637.0	NR_027643	319819.0	Mm.50754	NM_177008	ENSMUSG00000062391	4932435O22Rik	-	RIKEN cDNA 4932435O22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70647533-3	chr8	70647034	70648034	+	783.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023217, exon 5 of 5)	3' UTR (NM_023217, exon 5 of 5)	12204.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	11.0	59.0	19.5	12.5	4.0	2.5
Merged-chr6-142715636-3	chr6	142715148	142716148	+	783.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13374.0	NM_001310143	20928.0	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-130311926-5	chr10	130311476	130312476	+	783.049988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10876.0	NM_183264	67596.0	Mm.131264	NM_183264	ENSMUSG00000034833	Tespa1	5830405N20Rik|A430001F24Rik|AI450549	thymocyte expressed, positive selection associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-44846346-2	chr1	44845846	44846846	+	783.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-101397.0	NR_040602	75066.0	Mm.416932	NR_040602	ENSMUSG00000101701	4930521E06Rik	-	RIKEN cDNA 4930521E06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27750496-2	chr2	27749996	27750996	+	783.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 5 of 9)	intron (NM_001290481, intron 5 of 9)	39913.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57217693-3	chr16	57217205	57218205	+	783.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 2 of 17)	intron (NM_026254, intron 2 of 17)	13761.0	NM_026254	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	0.0	0.5	1.0	1.0	1.5	1.0
Merged-chr6-95118687-2	chr6	95118174	95119174	+	783.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001008785, exon 2 of 4)	exon (NM_001008785, exon 2 of 4)	794.0	NM_001102670	243574.0	Mm.333275	NM_001008785	ENSMUSG00000030031	Kbtbd8	AU040152|SSEC-51|SSEC51|Takrp|mKIAA1842	kelch repeat and BTB (POZ) domain containing 8	protein-coding	6.0	14.5	9.5	1.0	10.0	0.5
Merged-chr10-80169256-2	chr10	80168756	80169756	+	783.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152857, intron 1 of 7)	B1_Mur3|SINE|Alu	1417.0	NR_152857	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88621966-2	chr10	88621466	88622466	+	783.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-16814.0	NM_175418	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	18.5	29.5	16.5	14.5	41.5	27.0
Merged-chr19-9940949-2	chr19	9940400	9941400	+	783.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-39700.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	1.0	0.0	2.0	0.0	0.0	4.0
Merged-chr4-149646361-2	chr4	149645871	149646871	+	783.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001290989, exon 16 of 18)	exon (NM_001290989, exon 16 of 18)	9196.0	NR_105990	102465983.0		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	0.0	0.0	0.0	3.0	0.0	0.0
Merged-chr3-153613591-2	chr3	153613091	153614091	+	783.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 1 of 4)	intron (NM_011372, intron 1 of 4)	111542.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-96924440-2	chr13	96923940	96924940	+	783.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166065)	promoter-TSS (NM_001166065)	-249.0	NM_001166065	218476.0	Mm.483490	NM_001166065	ENSMUSG00000091387	Gcnt4	C2gnt3|Gm279|Gm73	glucosaminyl (N-acetyl) transferase 4, core 2 (beta-1,6-N-acetylglucosaminyltransferase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59679881-2	chr15	59679381	59680381	+	783.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31227.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-65039467-2	chr12	65038967	65039967	+	783.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177806, intron 1 of 13)	intron (NM_177806, intron 1 of 13)	3133.0	NM_177806	328110.0	Mm.283339	NM_177806	ENSMUSG00000035597	Prpf39	Srcs1	pre-mRNA processing factor 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17530264-2	chr16	17529764	17530764	+	783.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026909, exon 3 of 5)	exon (NM_026909, exon 3 of 5)	788.0	NM_026909	69009.0	Mm.10174	NM_026909	ENSMUSG00000022760	Thap7	1810004B07Rik	THAP domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86357498-2	chr1	86356998	86357998	+	783.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010880, intron 2 of 13)	intron (NM_010880, intron 2 of 13)	-1171.0	NR_002851	80828.0		NR_002851	ENSMUSG00000064823	Snord82	Rnu82|U82|Z25	small nucleolar RNA, C/D box 82	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129195299-2	chr2	129194799	129195799	+	783.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-3474.0	NM_015747	20515.0	Mm.272675	NM_015747	ENSMUSG00000027397	Slc20a1	AI607883|Glvr-1|Glvr1	solute carrier family 20, member 1	protein-coding	0.0	3.0	2.5	0.0	2.0	0.0
Merged-chr6-90599367-2	chr6	90598867	90599867	+	783.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027406)	TTS (NM_027406)	-5513.0	NM_027868	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97311627-5	chr7	97311033	97312033	+	783.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001177412, exon 9 of 10)	exon (NM_001177412, exon 9 of 10)	14431.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49802065-2	chr16	49801565	49802565	+	783.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-53589.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111434514-2	chr12	111434014	111435014	+	783.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8147.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53467529-1	chr19	53467029	53468029	+	783.0	f0_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-2733.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	1.5	0.0	0.0	1.5	1.5	2.5
Merged-chr3-88640598-3	chr3	88640044	88641044	+	783.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 14 of 21)	B3|SINE|B2	12598.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	4.0	10.5	1.0	1.0	2.5	2.5
Merged-chr12-117487586-3	chr12	117487138	117488138	+	783.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28841.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	14.0	0.0	1.5	0.0	0.0	0.0
Merged-chr12-25148671-2	chr12	25148171	25149171	+	783.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19497.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	13.5	10.0	10.0	9.5	16.5	2.0
Merged-chr2-165927248-2	chr2	165926748	165927748	+	783.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-42410.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	4.5	15.0	8.0	19.5	45.5	36.5
Merged-chr2-156011032-1	chr2	156010532	156011532	+	783.0	f1_c57bl6.idr	intron (NM_001356413, intron 5 of 13)	intron (NM_001356413, intron 5 of 13)	3004.0	NM_001356413	66366.0	Mm.141276	NM_025516	ENSMUSG00000005881	Ergic3	2310015B14Rik|AV318804|CGI-54|D2Ucla1|NY-BR-84|Sdbcag84	ERGIC and golgi 3	protein-coding	3.5	0.0	1.0	0.0	0.0	9.5
Merged-chr5-149273378-2	chr5	149272878	149273878	+	783.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308462, intron 2 of 3)	intron (NM_001308462, intron 2 of 3)	8374.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-84096026-4	chr6	84095531	84096531	+	783.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 17 of 54)	intron (NM_001077694, intron 17 of 54)	76645.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-106692381-2	chr13	106691881	106692881	+	783.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	244577.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr1-191480107-1	chr1	191479607	191480607	+	783.0	f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-15059.0	NR_151615	102634668.0		NR_151615		Gm32200	-	predicted gene, 32200	ncRNA	0.0	11.5	0.0	3.0	6.0	5.5
Merged-chr11-106792647-2	chr11	106792147	106793147	+	783.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166685, intron 3 of 18)	intron (NM_001166685, intron 3 of 18)	3395.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111822678-2	chr8	111822178	111823178	+	783.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011801, intron 5 of 6)	Lx2B2|LINE|L1	31632.0	NM_011801	23837.0	Mm.279437	NM_011801	ENSMUSG00000031954	Cfdp1	AA408409|Bcnt|Bucentaur|Cfdp|cp27	craniofacial development protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124552242-2	chr5	124551742	124552742	+	783.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026409)	promoter-TSS (NM_026409)	-622.0	NM_001190795	67848.0	Mm.281601	NM_026409	ENSMUSG00000029389	Ddx55	2810021H22Rik|mKIAA1595	DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	protein-coding	11.0	30.5	10.5	12.0	46.0	20.5
Merged-chr7-114072146-4	chr7	114071678	114072678	+	783.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	45603.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	0.0	0.0	1.0	0.0	3.0	0.0
Merged-chr10-28955368-2	chr10	28954868	28955868	+	783.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30938.0	NM_026336	67719.0	Mm.440480	NM_026336	ENSMUSG00000015519	2310057J18Rik	2210414P04Rik|Leg1	RIKEN cDNA 2310057J18 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-42355151-2	chr6	42354651	42355651	+	783.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289618, intron 4 of 9)	intron (NM_001289618, intron 4 of 9)	5323.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3488462-1	chr5	3487962	3488962	+	783.0	f0_balb.idr	intron (NM_009873, intron 5 of 7)	MLT1E2|LTR|ERVL-MaLR	-55371.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.0	3.0	2.5	0.0	1.5	2.5
Merged-chr15-78178560-4	chr15	78178069	78179069	+	783.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4461.0	NM_025931	67042.0	Mm.30191	NM_025931	ENSMUSG00000016637	Ift27	2600013G09Rik|Rabl4	intraflagellar transport 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32609630-2	chr17	32609130	32610130	+	783.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-11689.0	NM_001100187	677156.0	Mm.484117	NM_001100187	ENSMUSG00000062464	Cyp4f37	Gm9705	cytochrome P450, family 4, subfamily f, polypeptide 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134634137-3	chr4	134633646	134634646	+	783.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 2 of 11)	intron (NM_207237, intron 2 of 11)	-66295.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13599758-1	chr9	13599258	13600258	+	783.0	f0_balb.idr	Intergenic	Intergenic	-20231.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0.0	0.5	7.0	0.0	3.0	3.0
Merged-chr7-89419127-1	chr7	89418627	89419627	+	783.0	f0_balb.idr	Intergenic	Intergenic	-7179.0	NR_102276	101521.0	Mm.26902	NR_102276	ENSMUSG00000109311	AI314278	-	expressed sequence AI314278	ncRNA	4.0	4.0	0.0	0.0	4.5	0.0
Merged-chr9-121877282-4	chr9	121876796	121877796	+	783.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19500.0	NM_001357840	56295.0	Mm.347915	NM_019814	ENSMUSG00000038412	Higd1a	2210020B17Rik|7420700H20Rik|AI303276|AW049839|HIMP1|Hig1	HIG1 domain family, member 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90535271-3	chr2	90534766	90535766	+	783.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	ID4|SINE|ID	45381.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	18.5	31.5	37.5	11.0	30.5	24.0
Merged-chr3-129944023-3	chr3	129943532	129944532	+	783.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025779, intron 1 of 7)	intron (NM_025779, intron 1 of 7)	26174.0	NM_025779	66815.0	Mm.31056	NM_025779	ENSMUSG00000027994	Mcub	9030408N13Rik|Ccdc109b	mitochondrial calcium uniporter dominant negative beta subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170173676-2	chr1	170173176	170174176	+	783.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133806, intron 1 of 10)	intron (NM_133806, intron 1 of 10)	1288.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97878951-3	chr15	97878469	97879469	+	783.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009504, intron 3 of 9)	intron (NM_009504, intron 3 of 9)	29327.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64705410-2	chr1	64704910	64705910	+	783.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001097644, intron 3 of 9)	intron (NM_001097644, intron 3 of 9)	14065.0	NM_001097644	227210.0	Mm.39706	NM_001097644	ENSMUSG00000070871	Ccnyl1	9630037P07Rik|AW554339	cyclin Y-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99496984-2	chr9	99496484	99497484	+	783.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028768, intron 17 of 21)	intron (NM_028768, intron 17 of 21)	26563.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70652723-2	chr8	70652247	70653247	+	783.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023217, intron 2 of 4)	intron (NM_023217, intron 2 of 4)	6991.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	10.5	14.0	7.0	6.0	4.5	9.0
Merged-chr17-34139728-2	chr17	34139198	34140198	+	783.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010386)	TTS (NM_010386)	-5718.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	16.0	8.5	5.5	6.5	14.0	5.5
Merged-chr5-33630675-2	chr5	33630175	33631175	+	782.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1040.0	NM_001359463	74504.0	Mm.294695	NM_178390	ENSMUSG00000037339	Fam53a	2410018C17Rik|5430419M09Rik|Dntnp	family with sequence similarity 53, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108338778-3	chr12	108338263	108339263	+	782.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010010, intron 1 of 14)	intron (NM_010010, intron 1 of 14)	4447.0	NM_010010	13116.0	Mm.41911	NM_010010	ENSMUSG00000021259	Cyp46a1	CH24H|Cyp46	cytochrome P450, family 46, subfamily a, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151353125-3	chr1	151352632	151353632	+	782.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039511, intron 5 of 7)	B2_Mm2|SINE|B2	8634.0	NM_001039511	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115640603-3	chr11	115640106	115641106	+	782.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12311.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69670767-3	chr11	69670222	69671222	+	782.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144958, exon 3 of 11)	exon (NM_144958, exon 3 of 11)	1701.0	NM_144958	13681.0	Mm.26680	NM_144958	ENSMUSG00000059796	Eif4a1	BM-010|Ddx2a|Eif4	eukaryotic translation initiation factor 4A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-11215718-3	chr12	11215201	11216201	+	782.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6753.0	NM_019544	56184.0	Mm.117113	NM_019544	ENSMUSG00000047002	Msgn1	Msgn|pMsgn1	mesogenin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143623984-3	chr5	143623535	143624535	+	782.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011182, intron 1 of 12)	intron (NM_011182, intron 1 of 12)	1588.0	NM_011182	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	6.5	18.5	17.5	6.5	18.5	19.5
Merged-chr5-64811744-4	chr5	64811281	64812281	+	782.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	8258.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-160251634-3	chr1	160251147	160252147	+	782.844421	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038621, intron 3 of 8)	intron (NM_001038621, intron 3 of 8)	-38755.0	NM_009786	12301.0	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	3.5	7.5	2.5	4.0	7.5	2.5
Merged-chr18-60785269-2	chr18	60784769	60785769	+	782.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10673.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101974344-4	chr11	101973831	101974831	+	782.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028207, exon 3 of 3)	3' UTR (NM_028207, exon 3 of 3)	-7316.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88745431-4	chr1	88744935	88745935	+	782.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9455.0	NR_040493	78650.0	Mm.243767	NR_040493	ENSMUSG00000097398	Platr5	2410088K16Rik	pluripotency associated transcript 5	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-17936699-3	chr2	17936198	17937198	+	782.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60260.0	NM_026627	68231.0	Mm.23887	NM_026627	ENSMUSG00000062651	H2al2a	1700113O17Rik|H2A.Bbd|H2A.L.2|H2afb1|H2al2|TSEG-1|Tseg1	H2A histone family member L2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71636151-3	chr8	71635634	71636634	+	782.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 36 of 41)	intron (NM_001029873, intron 36 of 41)	-5028.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	3.0	4.5	3.0	1.5	3.5	3.5
Merged-chr3-97185363-2	chr3	97184863	97185863	+	782.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26586.0	NM_019800	66659.0	Mm.101368	NM_019800	ENSMUSG00000028093	Acp6	5730559A09Rik|ACPL1|AU022842|mPACPL1	acid phosphatase 6, lysophosphatidic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132048355-3	chr2	132047840	132048840	+	782.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-18352.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86405231-3	chr6	86404724	86405724	+	782.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164078, intron 1 of 11)	intron (NM_001164078, intron 1 of 11)	1005.0	NM_001164078	21841.0	Mm.333219	NM_011585	ENSMUSG00000071337	Tia1	2310050N03Rik|AI256674|TIA-1|mTIA-1	cytotoxic granule-associated RNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184665577-3	chr1	184665106	184666106	+	782.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46891.0	NR_040627	74971.0	Mm.410816	NR_040627	ENSMUSG00000092578	4930488B22Rik	-	RIKEN cDNA 4930488B22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17842966-3	chr6	17842471	17843471	+	782.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 3 of 15)	intron (NM_022332, intron 3 of 15)	93801.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-43432232-3	chr16	43431724	43432724	+	782.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	-12028.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31660937-3	chr6	31660410	31661410	+	782.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5221.0	NR_152155	434003.0	Mm.332979	NR_152155	ENSMUSG00000084973	Gm13848	-	predicted gene 13848	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-99184897-5	chr13	99184395	99185395	+	782.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004149)	promoter-TSS (NM_001004149)	72.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	40.5	55.5	41.0	42.5	49.0	42.5
Merged-chr3-52029864-4	chr3	52029367	52030367	+	782.762512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	75139.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62188341-2	chr10	62187841	62188841	+	782.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 7 of 7)	intron (NM_197996, intron 7 of 7)	5886.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149756623-4	chr4	149756163	149757163	+	782.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027460, intron 2 of 6)	B1_Mm|SINE|Alu	17604.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5009888-4	chr11	5009388	5010388	+	782.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243043, intron 2 of 22)	intron (NM_001243043, intron 2 of 22)	23064.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155223930-2	chr1	155223430	155224430	+	782.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65227.0	NM_021433	58244.0	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85458558-2	chr12	85458058	85459058	+	782.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15332.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-142010662-3	chr4	142010145	142011145	+	782.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 1 of 31)	intron (NM_177868, intron 1 of 31)	1006.0	NM_177868	329977.0	Mm.252019	NM_028429	ENSMUSG00000051435	Fhad1	2900090M10Rik|B230311F11	forkhead-associated (FHA) phosphopeptide binding domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44750875-3	chr19	44750372	44751372	+	782.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6522.0	NM_011037	18504.0	Mm.192158	NM_011037	ENSMUSG00000004231	Pax2	Opdc|Pax-2	paired box 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-22021054-3	chr13	22020558	22021558	+	782.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11317.0	NM_019429	54373.0	Mm.32043	NM_019429	ENSMUSG00000006179	Prss16	AI448615|TSSP	protease, serine 16 (thymus)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-114917290-4	chr4	114916808	114917808	+	782.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030721, intron 3 of 3)	intron (NR_030721, intron 3 of 3)	8019.0	NR_030721	100040736.0	Mm.231287	NR_030721	ENSMUSG00000085399	Foxd2os	9130206I24Rik	forkhead box D2, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-4728408-3	chr15	4727907	4728907	+	782.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016704, intron 1 of 15)	intron (NM_016704, intron 1 of 15)	1197.0	NM_016704	12274.0	Mm.20247	NM_016704	ENSMUSG00000022181	C6	AW111623	complement component 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127581231-2	chr10	127580725	127581725	+	782.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 20 of 88)	intron (NM_008512, intron 20 of 88)	39923.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	9.0	9.0	10.5	0.5	17.5	13.5
Merged-chr6-117905868-2	chr6	117905368	117906368	+	782.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166431)	promoter-TSS (NM_001166431)	-914.0	NM_001166430	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37146213-4	chr10	37145725	37146725	+	782.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-7299.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95347720-3	chr11	95347193	95348193	+	782.650024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172543, intron 1 of 7)	intron (NM_172543, intron 1 of 7)	10675.0	NM_172543	215512.0	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58583366-6	chr9	58582863	58583863	+	782.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151824, intron 1 of 7)	intron (NR_151824, intron 1 of 7)	1123.0	NM_001357751	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53822089-4	chr15	53821606	53822606	+	782.62915	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177225, intron 2 of 4)	intron (NM_177225, intron 2 of 4)	80330.0	NM_177225	320679.0	Mm.442455	NM_177225	ENSMUSG00000058656	Samd12	A830094I09Rik	sterile alpha motif domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4906205-2	chr16	4905705	4906705	+	782.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 1 of 17)	intron (NM_001357062, intron 1 of 17)	20105.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137074357-4	chr5	137073873	137074873	+	782.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2101.0	NM_008871	18787.0	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	1.0	2.0	4.5	2.5	2.5	5.0
Merged-chr7-126626016-4	chr7	126625497	126626497	+	782.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019738)	promoter-TSS (NM_019738)	-527.0	NM_019738	56312.0	Mm.18742	NM_019738	ENSMUSG00000030717	Nupr1	2310032H04Rik|Com1|p8	nuclear protein transcription regulator 1	protein-coding	4.0	27.5	8.5	2.0	1.5	14.5
Merged-chr5-111028562-3	chr5	111028052	111029052	+	782.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	24408.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	0.0	1.5	0.0	5.0	0.0	2.5
Merged-chr2-152781262-3	chr2	152780758	152781758	+	782.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_149254, exon 2 of 2)	non-coding (NR_149254, exon 2 of 2)	27085.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38469389-5	chr15	38468992	38469992	+	782.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21055.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66241930-4	chr14	66241428	66242428	+	782.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-28104.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120445443-2	chr8	120444943	120445943	+	782.583313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43423.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121637966-4	chr3	121637463	121638463	+	782.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036458, intron 2 of 2)	intron (NR_036458, intron 2 of 2)	5522.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99986924-3	chr10	99986417	99987417	+	782.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28904.0	NM_001347156	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100505991-3	chr5	100505484	100506484	+	782.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-5345.0	NM_001359914	231506.0	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-46497313-5	chr16	46496817	46497817	+	782.549988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021497)	promoter-TSS (NM_021497)	-350.0	NM_021497	58998.0	Mm.40477	NM_021495	ENSMUSG00000022656	Nectin3	2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113|Pvrl3	nectin cell adhesion molecule 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118606139-2	chr2	118605639	118606639	+	782.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009773, intron 3 of 22)	B3|SINE|B2	7928.0	NM_009773	12236.0	Mm.29133	NM_009773	ENSMUSG00000040084	Bub1b	AU045529|BUBR1	BUB1B, mitotic checkpoint serine/threonine kinase	protein-coding	0.5	1.5	8.0	3.5	0.5	5.5
Merged-chr11-103050517-2	chr11	103050017	103051017	+	782.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008707, intron 3 of 11)	RCHARR1|DNA|hAT-Charlie	21974.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59680275-2	chr15	59679775	59680775	+	782.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31621.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-26039430-2	chr10	26038930	26039930	+	782.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029881, intron 1 of 1)	intron (NM_029881, intron 1 of 1)	-38825.0	NR_028030	100040851.0	Mm.478630	NR_028030	ENSMUSG00000039098	Gm9767	-	predicted gene 9767	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-67056298-4	chr6	67055803	67056803	+	782.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040278, intron 1 of 6)	intron (NR_040278, intron 1 of 6)	-18896.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-122847065-2	chr4	122846553	122847553	+	782.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008917, intron 4 of 8)	B2_Mm1a|SINE|B2	10826.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	3.0	14.5	15.5	7.5	16.0	17.0
Merged-chr2-129371572-2	chr2	129371071	129372071	+	782.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008361)	promoter-TSS (NM_008361)	-432.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	13.5	46.0	18.5	16.5	24.5	17.0
Merged-chr17-71488548-2	chr17	71488022	71489022	+	782.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-13179.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	0.0	14.5	10.5	0.5	16.5	5.5
Merged-chr16-32116307-2	chr16	32115807	32116807	+	782.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16505.0	NM_025892	66994.0	Mm.22990	NM_025892	ENSMUSG00000035790	Cep19	1500031L02Rik|AI428934|AL022620	centrosomal protein 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8709743-4	chr4	8709248	8710248	+	782.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277149, intron 1 of 37)	intron (NM_001277149, intron 1 of 37)	19342.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154826019-2	chr4	154825519	154826519	+	782.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30181.0	NM_172878	242800.0	Mm.72944	NM_172878	ENSMUSG00000046637	Ttc34	4932418L02|B230396O12Rik	tetratricopeptide repeat domain 34	protein-coding	1.0	10.5	0.5	0.0	8.5	4.5
Merged-chr11-33122591-2	chr11	33122091	33123091	+	782.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008005, intron 4 of 4)	intron (NM_008005, intron 4 of 4)	24809.0	NM_008005	14172.0	Mm.339812	NM_008005	ENSMUSG00000057967	Fgf18	D130055P09Rik|FGF-18	fibroblast growth factor 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45125197-2	chr7	45124697	45125697	+	782.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013725)	promoter-TSS (NM_013725)	-808.0	NM_013725	27207.0	Mm.196538	NM_013725	ENSMUSG00000003429	Rps11	-	ribosomal protein S11	protein-coding	10.0	40.5	33.0	18.5	33.0	32.0
Merged-chr17-45762097-2	chr17	45761598	45762598	+	782.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	27592.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	0.5	0.0	3.0	2.0	4.0	1.0
Merged-chr15-100669193-2	chr15	100668693	100669693	+	782.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270537, intron 1 of 10)	intron (NM_001270537, intron 1 of 10)	307.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	17.0	46.5	46.5	47.0	47.0	45.5
Merged-chr9-89204451-4	chr9	89203952	89204952	+	782.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007534, intron 1 of 1)	intron (NM_007534, intron 1 of 1)	5179.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	0.0	1.0	2.0	0.0	0.0	0.0
Merged-chr18-53934449-1	chr18	53933949	53934949	+	782.5	f0_balb.idr	intron (NM_152809, intron 10 of 12)	intron (NM_152809, intron 10 of 12)	72336.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	7.5	20.5	6.5	27.0	27.0	24.0
Merged-chr17-44350319-2	chr17	44349819	44350819	+	782.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	161747.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116775613-2	chr11	116775113	116776113	+	782.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011371)	promoter-TSS (NM_011371)	-106.0	NM_011371	20445.0	Mm.436887	NM_011371	ENSMUSG00000009588	St6galnac1	Siat7a	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103117973-2	chr11	103117473	103118473	+	782.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_138753, exon 1 of 1)	exon (NM_138753, exon 1 of 1)	1648.0	NM_138753	192231.0	Mm.8763	NM_138753	ENSMUSG00000048878	Hexim1	7330426E13Rik|CLP-1|Clp1|HIS1	hexamethylene bis-acetamide inducible 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-57888460-2	chr14	57887960	57888960	+	782.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029492, intron 1 of 12)	intron (NM_029492, intron 1 of 12)	1876.0	NM_029492	75965.0	Mm.29044	NM_029492	ENSMUSG00000021969	Zdhhc20	4930542A17Rik|5033406L14Rik|AI448102|B230110O18Rik|HK11	zinc finger, DHHC domain containing 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132493255-2	chr4	132492755	132493755	+	782.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_144907, exon 10 of 10)	3' UTR (NM_144907, exon 10 of 10)	17201.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72147790-2	chr6	72147290	72148290	+	782.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 5 of 6)	MARNA|DNA|TcMar-Mariner	-24593.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97388271-2	chr6	97387771	97388771	+	782.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	PB1D10|SINE|Alu	71015.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94647786-2	chr11	94647286	94648286	+	782.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177752, intron 5 of 8)	intron (NM_177752, intron 5 of 8)	5968.0	NM_177752	268465.0	Mm.358937	NM_177752	ENSMUSG00000039055	Eme1	6820428D13	essential meiotic structure-specific endonuclease 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93031046-2	chr16	93030546	93031546	+	782.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-204972.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-115316550-2	chr10	115316050	115317050	+	782.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024454)	promoter-TSS (NM_024454)	-959.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29521330-2	chr17	29520830	29521830	+	782.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCTG)n|Simple_repeat|Simple_repeat	28263.0	NM_001162901	71138.0	Mm.158581	NM_001162901	ENSMUSG00000079580	Tmem217	4933413N12Rik|EG622644	transmembrane protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-10839332-2	chr8	10838832	10839832	+	782.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	43122.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-31211661-2	chr8	31211161	31212161	+	782.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286425, intron 3 of 3)	intron (NM_001286425, intron 3 of 3)	24330.0	NM_001286425	171167.0	Mm.334477	NM_134161	ENSMUSG00000046152	Fut10	fuc-TX|fut10A	fucosyltransferase 10	protein-coding	2.0	20.5	3.5	0.0	2.5	1.0
Merged-chr7-116161670-2	chr7	116161193	116162193	+	782.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001305189, intron 8 of 20)	intron (NM_001305189, intron 8 of 20)	27911.0	NM_001305190	233765.0	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	6.5	0.0	2.0	3.0	10.0	9.0
Merged-chr7-4806872-2	chr7	4806372	4807372	+	782.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5468.0	NM_133777	77891.0	Mm.389787	NM_133777	ENSMUSG00000060860	Ube2s	0910001J09Rik|6720465F12Rik|AA409170|E2-EPF	ubiquitin-conjugating enzyme E2S	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28964502-2	chr17	28964002	28965002	+	782.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025888, intron 6 of 7)	intron (NM_025888, intron 6 of 7)	11286.0	NM_025888	66989.0	Mm.435	NM_025888	ENSMUSG00000005936	Kctd20	2410004N11Rik|AI451943|AW541186|D17Ertd562e	potassium channel tetramerisation domain containing 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62077746-2	chr15	62077249	62078249	+	782.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	38492.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	3.5	1.5	0.5	4.0	1.5	0.5
Merged-chr12-20929099-2	chr12	20928599	20929599	+	782.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113320.0	NR_015521	69513.0	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	0.0	0.0	0.0	0.0	0.5	2.5
Merged-chr14-122109134-4	chr14	122108668	122109668	+	782.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080556, intron 1 of 16)	intron (NM_080556, intron 1 of 16)	2086.0	NM_080556	68059.0	Mm.275191	NM_080556	ENSMUSG00000025544	Tm9sf2	1500001N15Rik|AA536814|D14Ertd64e|P76	transmembrane 9 superfamily member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36903526-3	chr15	36903027	36904027	+	782.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103875.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21355048-5	chr5	21354530	21355530	+	782.4571530000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	-17643.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49986827-4	chr11	49986339	49987339	+	782.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38492.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-111228484-3	chr5	111227943	111228943	+	782.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 8 of 22)	intron (NM_001267622, intron 8 of 22)	-102254.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	10.5	1.0	1.0	2.0	2.0	0.5
Merged-chr19-18600434-3	chr19	18599933	18600933	+	782.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 2 of 9)	intron (NM_017375, intron 2 of 9)	31380.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	2.0	10.0	0.0	0.0	6.0	2.0
Merged-chr5-121477874-3	chr5	121477378	121478378	+	782.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161626, intron 4 of 9)	intron (NM_001161626, intron 4 of 9)	14697.0	NM_001161627	77462.0	Mm.358781	NM_029912	ENSMUSG00000029452	Tmem116	4930406A18Rik|4930513P12Rik|C030022K24Rik	transmembrane protein 116	protein-coding	2.0	0.0	1.5	0.0	8.5	0.5
Merged-chr2-166074681-4	chr2	166074244	166075244	+	782.424988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028072, exon 21 of 21)	3' UTR (NM_028072, exon 21 of 21)	80541.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	2.5	7.0	3.0	2.0	8.5	2.0
Merged-chr7-16783472-3	chr7	16782972	16783972	+	782.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009201, intron 1 of 8)	intron (NM_009201, intron 1 of 8)	2126.0	NM_009201	20514.0	Mm.1056	NM_009201	ENSMUSG00000001918	Slc1a5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC|Slc1a7	solute carrier family 1 (neutral amino acid transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-64459313-3	chr11	64458744	64459744	+	782.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178870, intron 1 of 1)	intron (NM_178870, intron 1 of 1)	-22570.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	0.0	3.5	0.5	0.0	1.0	0.0
Merged-chr14-121991339-4	chr14	121990673	121991673	+	782.354126	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 6 of 8)	intron (NM_026861, intron 6 of 8)	-25980.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	24.5	14.0	4.5	1.5	3.0	1.5
Merged-chr18-67394279-2	chr18	67393779	67394779	+	782.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026473, intron 3 of 3)	B4|SINE|B4	3548.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	27.5	12.0	4.0	1.0	2.0	5.0
Merged-chr5-118644438-2	chr5	118643936	118644936	+	782.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	83717.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	8.0	3.0	2.5	4.0	0.0	1.5
Merged-chr8-105544035-4	chr8	105543584	105544584	+	782.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013477, intron 1 of 7)	intron (NM_013477, intron 1 of 7)	21980.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-55392524-3	chr9	55392030	55393030	+	782.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172923, intron 3 of 10)	intron (NM_172923, intron 3 of 10)	65617.0	NM_001357568	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75858585-2	chr10	75858085	75859085	+	782.333313	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010798)	TTS (NM_010798)	1665.0	NM_010798	17319.0	Mm.2326	NM_010798	ENSMUSG00000033307	Mif	GIF|Glif	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31052417-3	chr17	31051898	31052898	+	782.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16-int|LTR|ERVK	-5296.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0.0	6.5	1.0	0.0	7.0	3.0
Merged-chr3-52029348-3	chr3	52028859	52029859	+	782.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	75647.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35231212-3	chr2	35230723	35231723	+	782.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25136.0	NM_001206367	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5779026-2	chr19	5778526	5779526	+	782.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-7607.0	NR_155264	78891.0	Mm.276063	NM_023912	ENSMUSG00000024941	Scyl1	2810011O19Rik|C85140|Ntkl|mdf|mfd|p105	SCY1-like 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84069443-3	chr8	84068968	84069968	+	782.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009055, intron 1 of 20)	intron (NM_009055, intron 1 of 20)	2632.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	54.0	125.0	82.5	30.5	153.0	115.5
Merged-chr1-151608001-3	chr1	151607515	151608515	+	782.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	36642.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154140237-2	chr4	154139737	154140737	+	782.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011642)	promoter-TSS (NM_011642)	-29.0	NM_011642	22062.0	Mm.78015	NM_011642	ENSMUSG00000029026	Trp73	TAp73|Tp73|deltaNp73|p73	transformation related protein 73	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99962066-3	chr7	99961569	99962569	+	782.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175388, intron 1 of 5)	(CA)n|Simple_repeat|Simple_repeat	18389.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38944621-3	chr18	38944144	38945144	+	782.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033789, intron 4 of 4)	intron (NM_001033789, intron 4 of 4)	-25945.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-15464549-3	chr6	15464049	15465049	+	782.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	UCON9|Unknown|Unknown	-256112.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141503295-3	chr4	141502779	141503779	+	782.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347235, intron 3 of 14)	intron (NM_001347235, intron 3 of 14)	35318.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	5.5	31.0	24.0	10.5	12.5	12.5
Merged-chr17-47767844-3	chr17	47767416	47768416	+	782.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-17828.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83025499-4	chr17	83025009	83026009	+	782.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52716.0	NR_045094	100503434.0	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131982776-4	chr2	131982271	131983271	+	782.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31734.0	NM_001278520	26434.0	Mm.180750	NM_023043	ENSMUSG00000027338	Prnd	AI450264|Dpl|PrPLP|doppel	prion like protein doppel	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-33970361-2	chr8	33969861	33970861	+	782.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	-40498.0	NM_001042675	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	6.5	0.5	3.0	12.0	3.0	7.5
Merged-chr17-31006931-2	chr17	31006490	31007490	+	782.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_177465, intron 20 of 21)	intron (NM_177465, intron 20 of 21)	-50704.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	1.5	4.5	4.5	0.0	11.5	5.0
Merged-chr1-39367169-2	chr1	39366669	39367669	+	782.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252218)	promoter-TSS (NM_001252218)	-682.0	NM_053257	114641.0	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67891949-2	chr5	67891457	67892457	+	782.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-44526.0	NM_001038999	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0.5	2.5	1.5	0.5	1.0	1.0
Merged-chr13-100201030-2	chr13	100200530	100201530	+	782.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001126182, intron 1 of 15)	Lx9|LINE|L1	1092.0	NM_001126182	17948.0	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148503606-3	chr5	148503055	148504055	+	782.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48118.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0.0	6.5	4.5	5.0	5.5	2.5
Merged-chr2-117146792-4	chr2	117146261	117147261	+	782.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277256, intron 1 of 4)	intron (NM_001277256, intron 1 of 4)	25690.0	NM_033524	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-31284120-2	chr9	31283620	31284620	+	782.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12719.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13107407-2	chr8	13106907	13107907	+	782.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_146207, intron 2 of 19)	RSINE1|SINE|B4	1686.0	NM_146207	99375.0	Mm.212861	NM_146207	ENSMUSG00000031446	Cul4a	2810470J21Rik|AW495282	cullin 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142877521-4	chr5	142876999	142877999	+	782.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033312, intron 4 of 4)	intron (NM_001033312, intron 4 of 4)	17739.0	NM_001033312	231863.0	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6525557-3	chr15	6525029	6526029	+	782.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-54318.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-3340971-2	chr18	3340471	3341471	+	782.200012	f1_balb.idr|f1_c57bl6.idr	intron (NR_033457, intron 1 of 1)	intron (NR_033457, intron 1 of 1)	-3382.0	NM_001110852	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-55958431-4	chr17	55957895	55958895	+	782.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028381)	promoter-TSS (NM_028381)	-792.0	NM_028381	72886.0	Mm.22796	NM_028381	ENSMUSG00000003208	Ccdc94	2900016D05Rik|AI413813	coiled-coil domain containing 94	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5123917-4	chr18	5123419	5124419	+	782.174988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41812.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116255509-3	chr3	116255005	116256005	+	782.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2021.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-19981218-2	chr16	19980718	19981718	+	782.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_183390, intron 1 of 6)	intron (NM_183390, intron 1 of 6)	1831.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121109450-2	chr8	121108950	121109950	+	782.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-1071.0	NM_001166482	234814.0	Mm.31690	NM_172761	ENSMUSG00000031816	Mthfsd	AW049977|BC052066|C920004D05	methenyltetrahydrofolate synthetase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123479918-2	chr9	123479418	123480418	+	782.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_013860, exon 1 of 8)	exon (NM_013860, exon 1 of 8)	1217.0	NM_013860	29806.0	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121800132-3	chr11	121799639	121800639	+	782.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30079.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97907458-3	chr15	97906984	97907984	+	782.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009504, intron 1 of 9)	intron (NM_009504, intron 1 of 9)	812.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-31742654-3	chr10	31742180	31743180	+	782.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013411, intron 5 of 6)	intron (NM_001013411, intron 5 of 6)	-132955.0	NM_001146349	268291.0	Mm.295212	NM_001146349	ENSMUSG00000063760	Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31125015-3	chr6	31124518	31125518	+	782.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	RSINE1|SINE|B4	-61925.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7343311-3	chr9	7342812	7343812	+	782.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1085.0	NM_001320077	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43883960-3	chr5	43883433	43884433	+	782.122253	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	MTD|LTR|ERVL-MaLR	15124.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	38.0	58.0	59.0	49.5	85.5	50.0
Merged-chr5-4757171-5	chr5	4756730	4757730	+	782.119995	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021457, exon 1 of 1)	exon (NM_021457, exon 1 of 1)	986.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr3-58449722-2	chr3	58449222	58450222	+	782.116699	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081229, intron 2 of 3)	intron (NM_001081229, intron 2 of 3)	35002.0	NM_001347233	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52633062-3	chr13	52632621	52633621	+	782.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 9 of 13)	intron (NM_011518, intron 9 of 13)	36239.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41379830-3	chr19	41379352	41380352	+	782.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 1 of 16)	L1MC4|LINE|L1	5218.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	10.5	35.5	12.5	10.5	35.0	12.5
Merged-chr1-66814683-5	chr1	66814140	66815140	+	782.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357156, intron 1 of 14)	intron (NM_001357156, intron 1 of 14)	2955.0	NM_177645	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-23493413-4	chr5	23492914	23493914	+	782.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026984, exon 16 of 26)	exon (NM_026984, exon 16 of 26)	58985.0	NM_026984	69188.0	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	2.0	6.0	12.5	2.0	6.0	16.5
Merged-chr1-38902794-3	chr1	38902292	38903292	+	782.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-4632.0	NM_145142	98388.0	Mm.260054	NM_145142	ENSMUSG00000026080	Chst10	AI507003|AU041319|Hnk-1st|ST	carbohydrate sulfotransferase 10	protein-coding	0.0	0.0	5.5	9.0	0.0	1.5
Merged-chr1-62244870-3	chr1	62244380	62245380	+	782.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081050, intron 15 of 22)	intron (NM_001081050, intron 15 of 22)	-108771.0	NR_151537	105243940.0		NR_151537		Pard3bos2	Gm12747	par-3 family cell polarity regulator beta, opposite strand 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101918161-4	chr7	101917562	101918562	+	782.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162974, intron 2 of 3)	intron (NM_001162974, intron 2 of 3)	3163.0	NM_001357584	69358.0	Mm.214841	NM_027053	ENSMUSG00000064307	Lrrc51	1700008D07Rik|Lrtomt	leucine rich repeat containing 51	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-91656815-4	chr13	91656305	91657305	+	782.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360775, intron 5 of 16)	intron (NM_001360775, intron 5 of 16)	-84716.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	32.0	12.5	17.0	4.5	39.5	29.5
Merged-chr17-33926551-2	chr17	33926039	33927039	+	782.041626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009318, intron 6 of 7)	intron (NM_009318, intron 6 of 7)	-3355.0	NM_009059	19732.0	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	5.5	0.0	0.0	2.0	6.0	4.0
Merged-chr18-60728749-2	chr18	60728249	60729249	+	782.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	-1183.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30349323-2	chr2	30348823	30349823	+	782.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346806, intron 5 of 12)	intron (NM_001346806, intron 5 of 12)	9993.0	NM_139302	227700.0	Mm.33343	NM_139302	ENSMUSG00000026860	Sh3glb2	SPAS-1	SH3-domain GRB2-like endophilin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62330072-1	chr4	62329572	62330572	+	782.0	f0_balb.idr	intron (NM_001355385, intron 12 of 27)	intron (NM_001355385, intron 12 of 27)	30524.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-34490117-4	chr14	34489621	34490621	+	782.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009758, intron 1 of 12)	intron (NM_009758, intron 1 of 12)	12425.0	NM_009758	12166.0	Mm.237825	NM_009758	ENSMUSG00000021796	Bmpr1a	1110037I22Rik|ALK-3|ALK3|AU045487|BMPR-1A|BMPR-IA|Bmpr|SKR5	bone morphogenetic protein receptor, type 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113039801-1	chr6	113039301	113040301	+	782.0	f0_balb.idr	Intergenic	RLTR1B|LTR|ERV1	-6501.0	NM_001355266	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10520602-4	chr19	10520102	10521102	+	782.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025333, intron 1 of 3)	B2_Mm2|SINE|B2	4607.0	NM_025333	66072.0	Mm.180063	NM_025333	ENSMUSG00000024668	Sdhaf2	0610038F07Rik|AA407634|AW049997	succinate dehydrogenase complex assembly factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117281114-2	chr10	117280614	117281614	+	782.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_017372, intron 1 of 3)	intron (NM_017372, intron 1 of 3)	1158.0	NM_017372	17105.0	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45433799-2	chr7	45433299	45434299	+	782.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011304, intron 1 of 14)	intron (NM_011304, intron 1 of 14)	665.0	NM_011304	20174.0	Mm.34410	NM_011304	ENSMUSG00000003868	Ruvbl2	mp47|p47	RuvB-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-38210023-1	chr7	38209523	38210523	+	782.0	f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	17971.0	NM_024413	72287.0	Mm.333798	NM_024413	ENSMUSG00000074170	Plekhf1	1810013P09Rik|APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology domain containing, family F (with FYVE domain) member 1	protein-coding	0.0	10.0	1.0	0.0	10.0	3.0
Merged-chr2-178498102-3	chr2	178497613	178498613	+	782.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67598.0	NM_198656	381409.0	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23683355-2	chr17	23682855	23683855	+	782.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_018777)	TTS (NM_018777)	671.0	NM_020293	56863.0	Mm.491368	NM_020293	ENSMUSG00000066720	Cldn9	nmf329	claudin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-105426827-2	chr14	105426327	105427327	+	782.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045859)	promoter-TSS (NR_045859)	-732.0	NR_045859	71362.0	Mm.410781	NR_045859	ENSMUSG00000115548	5430440P10Rik	-	RIKEN cDNA 5430440P10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-25882726-2	chr18	25882226	25883226	+	782.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-128569.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-126636096-2	chr2	126635596	126636596	+	782.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271469, intron 3 of 3)	intron (NM_001271469, intron 3 of 3)	-17418.0	NM_008230	15186.0	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70988183-3	chr14	70987700	70988700	+	782.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98093.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	0.0	1.5	5.5	3.0	5.0	7.0
Merged-chr4-46120933-2	chr4	46120433	46121433	+	782.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355375, intron 6 of 9)	intron (NM_001355375, intron 6 of 9)	17542.0	NM_173033	272027.0	Mm.249594	NM_173033	ENSMUSG00000035495	Tstd2	3010020C06	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	protein-coding	0.0	0.0	0.0	5.0	0.0	3.5
Merged-chr2-101214592-1	chr2	101214092	101215092	+	782.0	f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-410156.0	NM_009020	19374.0	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	7.5	1.5	1.0	0.0	0.0	0.0
Merged-chr12-52474579-4	chr12	52474075	52475075	+	782.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6034.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124916507-2	chr6	124916007	124917007	+	782.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152158)	promoter-TSS (NR_152158)	-356.0	NR_152158	442825.0	Mm.446713	NR_152158	ENSMUSG00000055818	A230083G16Rik	-	RIKEN cDNA A230083G16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107602644-1	chr9	107602144	107603144	+	782.0	f1_c57bl6.idr	intron (NM_001042779, intron 9 of 19)	L2b|LINE|L2	2758.0	NM_009153	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0.0	0.0	3.5	0.0	4.5	0.5
Merged-chr7-62420150-1	chr7	62419650	62420650	+	782.0	f0_balb.idr	promoter-TSS (NM_011746)	promoter-TSS (NM_011746)	-11.0	NM_011746	22652.0	Mm.146	NM_011746	ENSMUSG00000070527	Mkrn3	D7H15S9-1|Zfp127	makorin, ring finger protein, 3	protein-coding	0.0	0.0	2.5	0.0	0.0	0.0
Merged-chr9-119404214-2	chr9	119403714	119404714	+	782.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007397, intron 1 of 9)	intron (NM_007397, intron 1 of 9)	2036.0	NM_001313757	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	0.0	0.0	5.5	1.0	0.0	3.0
Merged-chr18-9212752-2	chr18	9212252	9213252	+	782.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008058)	promoter-TSS (NM_008058)	-104.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	0.0	0.0	0.0	0.0	1.0	3.0
Merged-chr14-87415313-1	chr14	87414813	87415813	+	782.0	f1_balb.idr	Intergenic	Intergenic	-1270.0	NM_172605	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	8.5	17.5	5.5	16.0	15.0	0.5
Merged-chr3-46395676-2	chr3	46395176	46396176	+	782.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	52265.0	NM_001101479	241989.0	Mm.119234	NM_001101479	ENSMUSG00000090919	Pabpc4l	C330050A14Rik|EG241989	poly(A) binding protein, cytoplasmic 4-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45664183-1	chr19	45663683	45664683	+	782.0	f0_balb.idr	Intergenic	Intergenic	-3990.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	1.0	1.0	3.0	0.0	4.5	1.5
Merged-chr19-43607233-1	chr19	43606733	43607733	+	782.0	f1_balb.idr	Intergenic	Intergenic	-5092.0	NM_008699	18089.0	Mm.56994	NM_008699	ENSMUSG00000044220	Nkx2-3	Nkx-2.3|Nkx2.3|tinman	NK2 homeobox 3	protein-coding	3.0	4.0	0.0	0.0	1.0	0.0
Merged-chr13-6651138-2	chr13	6650638	6651638	+	782.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2367.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-100435385-2	chr6	100434885	100435885	+	782.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92015.0	NR_040525	73395.0	Mm.69413	NR_040525	ENSMUSG00000101553	1700049E22Rik	-	RIKEN cDNA 1700049E22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20870992-2	chr9	20870492	20871492	+	782.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175687, intron 3 of 7)	intron (NM_175687, intron 3 of 7)	2350.0	NM_175687	319278.0	Mm.249932	NM_175687	ENSMUSG00000038884	A230050P20Rik	RyDEN	RIKEN cDNA A230050P20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-24196270-2	chr1	24195770	24196770	+	782.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007740, intron 7 of 37)	intron (NM_007740, intron 7 of 37)	1067.0	NM_001290691	12839.0	Mm.154662	NM_007740	ENSMUSG00000026147	Col9a1	Col9a-1	collagen, type IX, alpha 1	protein-coding	0.0	3.5	0.0	0.0	6.0	0.0
Merged-chr4-129827387-2	chr4	129826887	129827887	+	782.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	6679.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	26.0	48.0	11.5	17.5	58.5	28.0
Merged-chr5-120533655-2	chr5	120533155	120534155	+	782.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145853)	TTS (NM_145853)	22463.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76418700-2	chr14	76418200	76419200	+	782.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001310646, exon 3 of 5)	exon (NM_001310646, exon 3 of 5)	2879.0	NM_207652	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0.5	0.0	0.0	0.0	0.0	0.5
Merged-chr1-84362582-2	chr1	84362082	84363082	+	782.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77937.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120568093-1	chr11	120567593	120568593	+	782.0	f1_c57bl6.idr	intron (NM_011032, intron 3 of 10)	intron (NM_011032, intron 3 of 10)	5160.0	NM_011032	18453.0	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	3.0	9.0	4.0	4.0	0.0	0.0
Merged-chr11-50271581-2	chr11	50271081	50272081	+	782.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 1 of 4)	B1_Mur4|SINE|Alu	20755.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117202628-2	chr11	117202128	117203128	+	782.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 1 of 11)	intron (NM_001113486, intron 1 of 11)	2967.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127553001-2	chr10	127552502	127553502	+	782.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 60 of 88)	intron (NM_008512, intron 60 of 88)	-18443.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	1.0	2.0	7.5	14.0	5.5	1.0
Merged-chr2-166806880-2	chr2	166806380	166807380	+	782.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085495, intron 1 of 38)	intron (NM_001085495, intron 1 of 38)	1299.0	NM_001085495	99371.0	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90628141-3	chr3	90627672	90628672	+	782.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15278.0	NM_011313	20200.0	Mm.100144	NM_011313	ENSMUSG00000001025	S100a6	2A9|5B10|CALCYCLIN|Cacy|PRA	S100 calcium binding protein A6 (calcyclin)	protein-coding	8.0	22.5	24.5	10.5	13.5	12.5
Merged-chr19-53425854-2	chr19	53425354	53426354	+	782.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35220.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-93654943-2	chr14	93654445	93655445	+	782.0	f0_balb.idr|f1_balb.idr	intron (NM_001081377, intron 2 of 4)	intron (NM_001081377, intron 2 of 4)	235724.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	3.0	0.0	6.0	10.0	10.0	1.5
Merged-chr18-9089584-2	chr18	9089084	9090084	+	782.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123272.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	0.0	0.0	0.0	2.5	3.5	0.0
Merged-chr10-18928044-1	chr10	18927544	18928544	+	782.0	f1_balb.idr	Intergenic	Intergenic	82973.0	NM_022032	64058.0	Mm.28209	NM_022032	ENSMUSG00000019851	Perp	1110017A08Rik|KCP1|KRTCAP1|PIGPC1|THW	PERP, TP53 apoptosis effector	protein-coding	11.0	11.0	0.5	15.0	15.5	3.0
Merged-chr1-132296741-4	chr1	132296229	132297229	+	782.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-1897.0	NM_144810	213417.0	Mm.39723	NM_144810	ENSMUSG00000042115	Klhdc8a	A630065K24Rik	kelch domain containing 8A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58424929-2	chr1	58424427	58425427	+	782.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027853)	promoter-TSS (NR_027853)	-839.0	NM_001042634	12747.0	Mm.1761	NM_009905	ENSMUSG00000026034	Clk1	STY	CDC-like kinase 1	protein-coding	0.0	0.0	0.5	0.0	5.0	3.0
Merged-chr12-17724718-3	chr12	17724232	17725232	+	782.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	33923.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	39.0	56.5	52.0	24.0	33.0	25.5
Merged-chr11-8860026-2	chr11	8859526	8860526	+	782.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	151165.0	NM_001303610	15574.0	Mm.42201	NM_008316	ENSMUSG00000020413	Hus1	-	HUS1 checkpoint clamp component	protein-coding	0.0	5.0	0.0	0.0	0.0	3.0
Merged-chr8-91059364-2	chr8	91058786	91059786	+	782.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-10771.0	NM_001282001	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	0.0	2.0	8.0	0.0	4.0	2.0
Merged-chr11-5742290-2	chr11	5741790	5742790	+	782.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361588, intron 1 of 6)	B2_Mm2|SINE|B2	-1114.0	NM_178623	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-30951865-2	chr1	30951365	30952365	+	782.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2110.0	NM_011200	19243.0	Mm.491181	NM_011200	ENSMUSG00000026064	Ptp4a1	AA415290|AU019864|C130021B01|Prl-1	protein tyrosine phosphatase 4a1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-87858841-6	chr10	87858370	87859370	+	782.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010512)	promoter-TSS (NM_010512)	-182.0	NM_001111275	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	6.5	19.0	15.0	5.5	15.0	12.5
Merged-chr13-56641220-2	chr13	56640720	56641720	+	782.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31634.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0.0	1.0	0.0	3.0	0.5	0.5
Merged-chr18-60760655-2	chr18	60760155	60761155	+	782.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11990.0	NM_008306	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0.0	6.0	4.5	0.0	4.0	1.0
Merged-chr8-41592675-2	chr8	41592175	41593175	+	782.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-175557.0	NM_013522	14300.0	Mm.217312	NM_013522	ENSMUSG00000031590	Frg1	-	FSHD region gene 1	protein-coding	4.0	4.5	1.5	5.0	5.5	6.0
Merged-chr17-84168921-2	chr17	84168421	84169421	+	782.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F|LINE|L1	19026.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152026757-2	chr4	152026257	152027257	+	782.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133879, exon 2 of 11)	exon (NM_133879, exon 2 of 11)	914.0	NM_133879	100090.0	Mm.24661	NM_133879	ENSMUSG00000028952	Zbtb48	0610011D15Rik|AI327031|Hkr3|TZAP	zinc finger and BTB domain containing 48	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103342195-2	chr15	103341695	103342695	+	782.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2109.0	NM_013866	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75768177-2	chr14	75767677	75768677	+	782.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026232, intron 7 of 9)	intron (NM_026232, intron 7 of 9)	-13684.0	NM_177381	338337.0	Mm.86507	NM_177381	ENSMUSG00000034893	Cog3	E430004N23	component of oligomeric golgi complex 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41697692-4	chr4	41697258	41698258	+	781.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016673)	promoter-TSS (NM_016673)	-667.0	NM_016673	12804.0	Mm.425178	NM_016673	ENSMUSG00000028444	Cntfr	Cntfralpha	ciliary neurotrophic factor receptor	protein-coding	0.0	1.5	0.0	3.5	1.5	0.0
Merged-chr10-40133223-4	chr10	40132726	40133726	+	781.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	9028.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-33983637-4	chr5	33983202	33984202	+	781.958313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310547, intron 1 of 3)	CpG	269.0	NM_001310546	381633.0	Mm.4923	NM_001033458	ENSMUSG00000070858	Gm1673	-	predicted gene 1673	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94941377-3	chr13	94940876	94941876	+	781.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34968.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105531157-3	chr5	105530663	105531663	+	781.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 1 of 3)	intron (NM_133897, intron 1 of 3)	11692.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	1.0	10.5	8.5	7.0	57.0	41.5
Merged-chr3-51199062-2	chr3	51198562	51199562	+	781.928589	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-25385.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11168189-3	chr8	11167675	11168675	+	781.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B4|LTR|ERVL	-144630.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97800331-3	chr7	97799839	97800839	+	781.916687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357364, intron 1 of 14)	RMER15|LTR|ERVL	11798.0	NM_001357364	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	30.0	95.0	83.5	33.0	56.5	52.0
Merged-chr17-27700091-3	chr17	27699606	27700606	+	781.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178365, intron 1 of 9)	MTD|LTR|ERVL-MaLR	14867.0	NM_178365	23969.0	Mm.4926	NM_011861	ENSMUSG00000040276	Pacsin1	A830061D09Rik|H74|mKIAA1379|syndapin	protein kinase C and casein kinase substrate in neurons 1	protein-coding	8.0	23.0	13.0	2.5	21.5	5.5
Merged-chr6-91682473-4	chr6	91681932	91682932	+	781.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1635.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4616251-3	chr8	4615769	4616769	+	781.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145591, intron 1 of 3)	intron (NM_145591, intron 1 of 3)	3099.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56608891-4	chr18	56608372	56609372	+	781.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20524.0	NM_026099	67343.0	Mm.87057	NM_026099	ENSMUSG00000032900	Tex43	1700065I17Rik|Tseg7	testis expressed 43	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101772889-3	chr15	101772390	101773390	+	781.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9386.0	NR_033444	406222.0	Mm.359153	NM_001003669	ENSMUSG00000067596	Krt74	K74|Kb37	keratin 74	pseudo	1.0	1.0	2.5	1.0	0.0	0.0
Merged-chr4-133390787-3	chr4	133390250	133391250	+	781.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016981, intron 1 of 11)	MIR3|SINE|MIR	20974.0	NR_039582	100628620.0		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	1.5	0.5	3.5	1.0	1.5	3.5
Merged-chr5-123714857-3	chr5	123714356	123715356	+	781.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027494, intron 3 of 13)	intron (NM_027494, intron 3 of 13)	6188.0	NM_027494	70650.0	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	0.0	1.5	0.0	0.0	0.0	1.0
Merged-chr17-78249154-4	chr17	78248647	78249647	+	781.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 2 of 16)	intron (NM_015800, intron 2 of 16)	48899.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16398574-4	chr7	16398099	16399099	+	781.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2597.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-24952356-4	chr12	24951769	24952769	+	781.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026037, intron 9 of 12)	intron (NM_026037, intron 9 of 12)	-22663.0	NM_001081378	77480.0	Mm.250641	NM_001081378	ENSMUSG00000036333	Kidins220	3110039L19Rik|AI194387|AI316525|C330002I19Rik|mKIAA1250	kinase D-interacting substrate 220	protein-coding	4.0	0.0	2.0	0.0	1.0	6.0
Merged-chr14-55177472-4	chr14	55176973	55177973	+	781.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44534.0	NM_027790	71412.0	Mm.85484	NM_027790	ENSMUSG00000022209	Dhrs2	5430405K24Rik|Hep27	dehydrogenase/reductase member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170308124-4	chr2	170307614	170308614	+	781.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48247.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27769349-3	chr2	27768839	27769839	+	781.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58756.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-90824483-3	chr8	90823999	90824999	+	781.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4336.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	2.0	0.0	1.0	0.0	1.0	2.0
Merged-chr12-111653636-3	chr12	111653141	111654141	+	781.866638	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021516, intron 16 of 16)	intron (NM_021516, intron 16 of 16)	18697.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69406970-2	chr11	69406470	69407470	+	781.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001017426, intron 8 of 22)	intron (NM_001017426, intron 8 of 22)	6705.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80140857-2	chr10	80140357	80141357	+	781.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-1418.0	NM_001347092	66043.0	Mm.278560	NM_025313	ENSMUSG00000003072	Atp5d	0610008F14Rik|1500000I11Rik|AA960090|AI876556|AU020773|Atp5f1d|C85518	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120453875-2	chr11	120453375	120454375	+	781.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012065)	promoter-TSS (NM_012065)	-375.0	NM_012065	18588.0	Mm.39200	NM_012065	ENSMUSG00000025386	Pde6g	Pdeg|p3AT	phosphodiesterase 6G, cGMP-specific, rod, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134989643-3	chr1	134989176	134990176	+	781.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033409, intron 17 of 17)	intron (NM_001033409, intron 17 of 17)	27111.0	NM_001278115	67196.0	Mm.284587	NM_026024	ENSMUSG00000026429	Ube2t	2700084L22Rik|C80607	ubiquitin-conjugating enzyme E2T	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-104432019-4	chr11	104431533	104432533	+	781.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 2 of 14)	intron (NM_001359634, intron 2 of 14)	10258.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-61268955-3	chr3	61268475	61269475	+	781.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95532.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	2.5	0.0	1.0	0.0	0.0	2.5
Merged-chr10-128441836-3	chr10	128441265	128442265	+	781.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_104288)	TTS (NR_104288)	-16915.0	NR_106183	102465894.0		NR_106183	ENSMUSG00000098957	Mir8105	Gm27346|mmu-mir-8105	microRNA 8105	ncRNA	2.0	4.0	1.0	0.5	8.0	4.5
Merged-chr8-69822224-2	chr8	69821724	69822724	+	781.825012	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020028)	promoter-TSS (NM_020028)	-341.0	NM_020028	53978.0	Mm.23253	NM_020028	ENSMUSG00000031861	Lpar2	Edg4|IPA2|LPA2	lysophosphatidic acid receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr13-74029209-4	chr13	74028719	74029719	+	781.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182839, intron 2 of 3)	intron (NM_182839, intron 2 of 3)	19800.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129302728-3	chr2	129302223	129303223	+	781.799988	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010554, intron 6 of 6)	intron (NM_010554, intron 6 of 6)	5353.0	NR_040371	100503468.0	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	-	predicted gene 14023	ncRNA	9.5	22.0	8.0	15.5	23.0	10.0
Merged-chr14-32787647-3	chr14	32787139	32788139	+	781.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163616, intron 1 of 4)	intron (NM_001163616, intron 1 of 4)	1676.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47569247-2	chr14	47568722	47569722	+	781.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172599)	promoter-TSS (NM_172599)	-788.0	NM_172599	100504663.0	Mm.287279	NM_172599	ENSMUSG00000037526	Atg14	4832427M01|Atg14L|D14Ertd114e|D14Ertd436e	autophagy related 14	protein-coding	2.5	10.5	4.5	5.0	7.5	5.5
Merged-chr16-95699954-2	chr16	95699454	95700454	+	781.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2453.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126578617-2	chr8	126578117	126579117	+	781.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14819.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr5-135710205-2	chr5	135709705	135710705	+	781.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 1 of 15)	MTD|LTR|ERVL-MaLR	21060.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	1.0	5.0	7.5	7.0	15.0	8.5
Merged-chr5-86190931-4	chr5	86190423	86191423	+	781.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310653, intron 1 of 1)	intron (NM_001310653, intron 1 of 1)	6978.0	NM_001310653	14715.0	Mm.26791	NM_010323	ENSMUSG00000029255	Gnrhr	-	gonadotropin releasing hormone receptor	protein-coding	61.5	103.5	101.0	9.0	0.5	6.5
Merged-chr17-35666288-3	chr17	35665785	35666785	+	781.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175137, intron 3 of 28)	intron (NM_175137, intron 3 of 28)	1307.0	NM_175137	68915.0	Mm.32002	NM_175137	ENSMUSG00000038838	Vars2	1190004I24Rik|Vars2l|mKIAA1885	valyl-tRNA synthetase 2, mitochondrial	protein-coding	6.5	1.0	3.0	1.5	0.0	0.0
Merged-chr5-75143461-5	chr5	75142995	75143995	+	781.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045792, intron 3 of 3)	intron (NR_045792, intron 3 of 3)	-8756.0	NR_144636	18595.0	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	9.0	3.0	0.0	0.5	2.0	0.0
Merged-chr9-68884610-3	chr9	68884118	68885118	+	781.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013646, intron 1 of 10)	intron (NM_013646, intron 1 of 10)	119272.0	NR_033299	320440.0	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-15046788-3	chr9	15046301	15047301	+	781.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-1323.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144204052-2	chr3	144203552	144204552	+	781.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010723, intron 1 of 4)	intron (NM_010723, intron 1 of 4)	1203.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121697567-2	chr9	121697067	121698067	+	781.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164562, intron 1 of 6)	intron (NM_001164562, intron 1 of 6)	7462.0	NM_178677	215474.0	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111344383-2	chr12	111343883	111344883	+	781.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_183016, intron 2 of 36)	intron (NM_183016, intron 2 of 36)	33335.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-5494476-4	chr5	5493979	5494979	+	781.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15336.0	NM_001200025	381716.0	Mm.276086	NM_001200025	ENSMUSG00000079666	1700015F17Rik	Gm1686	RIKEN cDNA 1700015F17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131282513-2	chr1	131282013	131283013	+	781.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2950.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	1.5	2.0	1.0	0.0	4.0	0.0
Merged-chr8-72365970-3	chr8	72365446	72366446	+	781.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007944, intron 21 of 23)	X3_LINE|LINE|RTE-BovB	46884.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	3.0	2.0	0.0	0.0	0.5	3.5
Merged-chr18-61384743-3	chr18	61384247	61385247	+	781.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133249, intron 1 of 11)	L1MB3|LINE|L1	13153.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	15.5	90.5	52.0	23.5	78.0	24.5
Merged-chr4-57947109-3	chr4	57946615	57947615	+	781.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011660, intron 3 of 4)	GC_rich|Low_complexity|Low_complexity	9296.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66855391-2	chr15	66854891	66855891	+	781.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23562.0	NM_009192	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.0	1.0	8.5	1.0	9.0	3.5
Merged-chr5-29738382-2	chr5	29737882	29738882	+	781.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359198, intron 1 of 8)	intron (NM_001359198, intron 1 of 8)	-2446.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-54154973-2	chr5	54154473	54155473	+	781.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	156450.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75931382-2	chr15	75930882	75931882	+	781.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1564.0	NM_001357005	22122.0	Mm.22596	NM_031201	ENSMUSG00000022570	Tsta3	AI256181|FX|Tstap35b	tissue specific transplantation antigen P35B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70640534-2	chr11	70640034	70641034	+	781.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010326, exon 2 of 2)	exon (NM_010326, exon 2 of 2)	1412.0	NM_010326	14723.0	Mm.377085	NM_010326	ENSMUSG00000050675	Gp1ba	GP-Ib alpha|GPIba|GPIbalpha	glycoprotein 1b, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125576592-2	chr7	125576091	125577091	+	781.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001008700, exon 11 of 11)	exon (NM_001008700, exon 11 of 11)	24309.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	0.0	4.0	4.5	16.0	1.0	1.0
Merged-chr14-63148741-2	chr14	63148241	63149241	+	781.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360211, intron 7 of 7)	ORR1F|LTR|ERVL-MaLR	26279.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109567625-2	chr8	109567125	109568125	+	781.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175646, intron 1 of 3)	B4|SINE|B4	1733.0	NM_175646	234723.0	Mm.37667	NM_175646	ENSMUSG00000031723	Txnl4b	AI595343|D530025J19Rik|DLP|Dim2	thioredoxin-like 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57147023-2	chr9	57146523	57147523	+	781.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357409, exon 2 of 11)	exon (NM_001357409, exon 2 of 11)	1282.0	NM_028347	72774.0	Mm.35749	NM_028347	ENSMUSG00000032298	Neil1	2810450N13Rik|NEH1|Nei1	nei endonuclease VIII-like 1 (E. coli)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167756158-2	chr2	167755658	167756658	+	781.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64981.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115091543-2	chr11	115091043	115092043	+	781.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001163753, exon 1 of 9)	5' UTR (NM_001163753, exon 1 of 9)	112.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70102201-2	chr14	70101701	70102701	+	781.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021328, intron 1 of 8)	intron (NM_021328, intron 1 of 8)	2108.0	NM_001360404	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-106592719-2	chr14	106592219	106593219	+	781.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-106199.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41738159-4	chr4	41737661	41738661	+	781.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001286551)	TTS (NM_001286551)	3198.0	NM_001286540	18391.0	Mm.425181	NM_011014	ENSMUSG00000036078	Sigmar1	Oprs1|Sig1R|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123134826-2	chr5	123134326	123135326	+	781.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2197.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79989119-2	chr10	79988619	79989619	+	781.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007725, intron 1 of 6)	intron (NM_007725, intron 1 of 6)	519.0	NM_007725	12798.0	Mm.157770	NM_007725	ENSMUSG00000004665	Cnn2	AA408047|AI324678|Calpo2	calponin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-78306769-2	chr18	78306269	78307269	+	781.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207651, intron 3 of 21)	intron (NM_207651, intron 3 of 21)	-100329.0	NM_001110274	27411.0	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115616281-2	chr8	115615781	115616781	+	781.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90613.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60639506-2	chr10	60639006	60640006	+	781.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 4 of 68)	intron (NM_001252635, intron 4 of 68)	56984.0	NM_001252635	22295.0	Mm.440327	NM_023370	ENSMUSG00000012819	Cdh23	4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v	cadherin 23 (otocadherin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-118310530-2	chr1	118310030	118311030	+	781.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011650, intron 1 of 5)	intron (NM_011650, intron 1 of 5)	198.0	NR_153836	22099.0	Mm.426637	NM_011650	ENSMUSG00000026374	Tsn	2610034C24Rik|AU040286|C3PO|TB-RBP	translin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-18319176-2	chr10	18318676	18319676	+	781.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-84195.0	NM_144820	215814.0	Mm.296565	NM_144820	ENSMUSG00000059554	Ccdc28a	1700009P13Rik|AI480677	coiled-coil domain containing 28A	protein-coding	0.0	3.5	0.0	0.0	2.0	0.0
Merged-chr3-87797010-2	chr3	87796510	87797510	+	781.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011832)	promoter-TSS (NM_011832)	59.0	NM_011832	23920.0	Mm.42041	NM_011832	ENSMUSG00000005640	Insrr	Irr	insulin receptor-related receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87593218-2	chr11	87592718	87593718	+	781.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133215, intron 1 of 18)	intron (NM_133215, intron 1 of 18)	1052.0	NM_133215	170749.0	Mm.399376	NM_133215	ENSMUSG00000018401	Mtmr4	AA596759|ESTM44|FYVE-DSP2|ZFYVE11|mKIAA0647	myotubularin related protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-25834933-2	chr16	25834433	25835433	+	781.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127262, intron 2 of 10)	intron (NM_001127262, intron 2 of 10)	33017.0	NM_001127264	22061.0	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-60829264-2	chr14	60828764	60829764	+	781.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027436, intron 11 of 18)	intron (NM_027436, intron 11 of 18)	44698.0	NR_040642	70478.0	Mm.274650	NM_027436	ENSMUSG00000021993	Mipep	5730405E07Rik|MIP	mitochondrial intermediate peptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47715543-4	chr9	47714976	47715976	+	781.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	102732.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	6.5	20.5	7.0	1.5	23.5	11.5
Merged-chr19-56265288-3	chr19	56264785	56265785	+	781.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-22627.0	NM_001329936	226243.0	Mm.25791	NM_146101	ENSMUSG00000025075	Habp2	AI035669|FSAP|HABP|HGFAL|PHBP	hyaluronic acid binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70498441-2	chr11	70497941	70498941	+	781.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	-6833.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67347664-1	chr5	67347164	67348164	+	781.5	f1_balb.idr	intron (NM_178651, intron 14 of 17)	B1_Mur1|SINE|Alu	40709.0	NM_001310629	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	0.0	2.5	1.0	9.0	0.0	0.0
Merged-chr15-79349069-2	chr15	79348569	79349569	+	781.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304832, intron 1 of 2)	intron (NM_001304832, intron 1 of 2)	667.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-31045955-2	chr7	31045455	31046455	+	781.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022007, intron 2 of 5)	B2_Mm2|SINE|B2	-3624.0	NM_001287217	18301.0	Mm.1870	NM_008761	ENSMUSG00000009687	Fxyd5	EF-8|Oit2|RIC	FXYD domain-containing ion transport regulator 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132084481-2	chr2	132083981	132084981	+	781.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018824, intron 5 of 15)	intron (NM_018824, intron 5 of 15)	-54493.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-39674369-2	chr8	39673854	39674854	+	781.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-31676.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	6.5	1.0	1.5	12.0	12.5	5.5
Merged-chr13-9092908-2	chr13	9092408	9093408	+	781.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311117)	promoter-TSS (NM_001311117)	-973.0	NM_001311117	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51964397-6	chr13	51963896	51964896	+	781.486084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117721.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-67875941-3	chr14	67875443	67876443	+	781.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177780, intron 2 of 51)	intron (NM_177780, intron 2 of 51)	-16198.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	25.5	21.5	9.0	7.5	33.0	11.5
Merged-chr19-3586803-3	chr19	3586307	3587307	+	781.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008513, intron 21 of 22)	intron (NM_008513, intron 21 of 22)	-11058.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	3.5	10.5	3.0	3.5	10.5	0.5
Merged-chr4-86898928-4	chr4	86898437	86899437	+	781.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290541, intron 3 of 4)	intron (NM_001290541, intron 3 of 4)	24523.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	0.5	8.0	3.5	7.0	23.0	11.0
Merged-chr8-20013445-3	chr8	20012944	20013944	+	781.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270553, intron 6 of 9)	intron (NM_001270553, intron 6 of 9)	283868.0	NM_001039553	626415.0	Mm.425517	NM_001039553	ENSMUSG00000096265	4930467E23Rik	TSAP	RIKEN cDNA 4930467E23 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89485359-3	chr3	89484859	89485859	+	781.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25788.0	NM_027348	68603.0	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-44923327-2	chr2	44922827	44923827	+	781.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61705.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75191398-6	chr14	75190972	75191972	+	781.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	-50815.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29214555-4	chr6	29214005	29215005	+	781.354187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302933, intron 1 of 14)	intron (NM_001302933, intron 1 of 14)	1859.0	NM_001302933	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115538221-2	chr11	115537701	115538701	+	781.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1971.0	NM_133354	170930.0	Mm.29923	NM_133354	ENSMUSG00000020738	Sumo2	SUMO-2|Smt3A|Smt3b|Smt3h2	small ubiquitin-like modifier 2	protein-coding	8.0	6.5	6.5	5.0	0.5	2.0
Merged-chr11-102189175-2	chr11	102188675	102189675	+	781.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175935)	promoter-TSS (NM_175935)	-524.0	NM_175935	68401.0	Mm.22385	NM_175935	ENSMUSG00000034793	G6pc3	0710001K01Rik|AU019276|AU045429|AV128920|AW545836|UGRP	glucose 6 phosphatase, catalytic, 3	protein-coding	36.5	87.0	121.5	42.0	80.5	127.0
Merged-chr6-115698918-2	chr6	115698418	115699418	+	781.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR33|LTR|ERVK	-22283.0	NM_029780	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128379832-2	chr6	128379332	128380332	+	781.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_027697, exon 2 of 3)	exon (NM_027697, exon 2 of 3)	4322.0	NM_027697	71149.0	Mm.483176	NM_027697	ENSMUSG00000079304	Tex52	4933413G19Rik	testis expressed 52	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103357469-2	chr11	103356969	103357969	+	781.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205236, intron 3 of 17)	intron (NM_001205236, intron 3 of 17)	6223.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr5-32739287-1	chr5	32738787	32739787	+	781.333313	f1_balb.idr	exon (NM_177298, exon 4 of 8)	exon (NM_177298, exon 4 of 8)	7055.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	4.5	0.0	0.5	0.0	0.0	1.0
Merged-chr10-75227205-3	chr10	75226718	75227718	+	781.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145826, intron 2 of 18)	MIR|SINE|MIR	14828.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110910667-3	chr7	110910143	110911143	+	781.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194464, intron 10 of 20)	HAL1b|LINE|L1	5658.0	NR_045267	100504184.0	Mm.441327	NR_045267	ENSMUSG00000087160	Gm16336	-	predicted gene 16336	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21040699-3	chr9	21040201	21041201	+	781.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	-8373.0	NR_035438	100316681.0		NR_035438	ENSMUSG00000084663	Mir1900	Mirn1900|mmu-mir-1900	microRNA 1900	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40358331-3	chr10	40357828	40358828	+	781.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291816, intron 1 of 11)	intron (NM_001291816, intron 1 of 11)	9020.0	NM_001291816	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-9138383-3	chr15	9137851	9138851	+	781.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 2 of 9)	L2a|LINE|L2	2103.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120812259-3	chr10	120811786	120812786	+	781.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177092, intron 5 of 6)	intron (NM_177092, intron 5 of 6)	-45343.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-54360298-4	chr3	54359757	54360757	+	781.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198766)	promoter-TSS (NM_001198766)	-850.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	13.5	10.5	15.0	10.5	8.5	9.0
Merged-chr10-83565623-3	chr10	83565126	83566126	+	781.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033375, intron 14 of 32)	intron (NM_001033375, intron 14 of 32)	21685.0	NM_001033375	319277.0	Mm.491194	NM_001033375	ENSMUSG00000034560	Washc4	A230046K03Rik|AA589518|Kiaa1033|mKIAA1033	WASH complex subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125651533-3	chr6	125651027	125652027	+	781.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 34 of 51)	intron (NM_011708, intron 34 of 51)	-38892.0	NM_153589	243634.0	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95416069-6	chr10	95415542	95416542	+	781.277771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168657)	promoter-TSS (NM_001168657)	170.0	NM_001168655	216233.0	Mm.474283	NM_007706	ENSMUSG00000020027	Socs2	8030460M17|AI527257|AW108012|CIS2|Cish2|D130043N08Rik|JAB|SOCS-2|SSI-2|hg	suppressor of cytokine signaling 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13870772-3	chr10	13870275	13871275	+	781.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152745)	promoter-TSS (NR_152745)	-505.0	NR_152745	102634635.0		NR_152745	ENSMUSG00000112172	Gm32172	-	predicted gene, 32172	ncRNA	14.5	34.0	32.0	7.5	41.5	36.0
Merged-chr1-52844352-3	chr1	52843831	52844831	+	781.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146108)	promoter-TSS (NM_146108)	-707.0	NM_146108	227095.0	Mm.222063	NM_146108	ENSMUSG00000041426	Hibch	2610509I15Rik|HIBYL-COA-H	3-hydroxyisobutyryl-Coenzyme A hydrolase	protein-coding	0.0	6.5	11.0	5.0	13.5	8.0
Merged-chr5-64379987-2	chr5	64379487	64380487	+	781.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87955.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	40.5	72.0	38.0	28.0	68.0	46.0
Merged-chr5-146904608-4	chr5	146904110	146905110	+	781.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44047.0	NM_025652	66596.0	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	0.0	0.0	0.0	0.5	0.0	2.5
Merged-chr13-100844125-2	chr13	100843625	100844625	+	781.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-10698.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44005884-4	chr10	44005385	44006385	+	781.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1039.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52991618-2	chr2	52991118	52992118	+	781.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	133750.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4452531-2	chr2	4452031	4453031	+	781.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	51555.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107202544-2	chr11	107202044	107203044	+	781.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-13163.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70874484-2	chr8	70873984	70874984	+	781.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026964)	promoter-TSS (NM_026964)	-994.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	0.0	3.0	2.0	0.5	0.0	0.0
Merged-chr1-136684864-2	chr1	136684364	136685364	+	781.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_045325, intron 1 of 2)	intron (NR_045325, intron 1 of 2)	1235.0	NR_045325	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96988311-2	chr11	96987811	96988811	+	781.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10623.0	NM_001080964	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32511028-2	chr9	32510528	32511528	+	781.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	30424.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145827321-6	chr2	145826816	145827816	+	781.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 4 of 12)	B1F|SINE|Alu	41200.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44194155-3	chr9	44193678	44194678	+	781.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 2 of 15)	intron (NM_007619, intron 2 of 15)	39868.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	0.0	8.5	12.0	0.0	14.0	12.0
Merged-chr17-15709889-3	chr17	15709414	15710414	+	781.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007690, intron 2 of 35)	Lx7|LINE|L1	4947.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45566706-3	chr14	45566211	45567211	+	781.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	23001.0	NR_045809	67651.0	Mm.55930	NR_045809	ENSMUSG00000115324	4930527F14Rik	-	RIKEN cDNA 4930527F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121840084-3	chr9	121839591	121840591	+	781.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028384)	promoter-TSS (NM_028384)	-630.0	NM_028384	100502861.0	Mm.335550	NM_028384	ENSMUSG00000079235	Ccdc13	2900041A11Rik|Gm188	coiled-coil domain containing 13	protein-coding	12.0	17.0	11.0	2.0	3.5	1.0
Merged-chr12-73045513-5	chr12	73045065	73046065	+	781.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009189, intron 1 of 1)	CpG	1147.0	NM_009189	20471.0	Mm.4645	NM_009189	ENSMUSG00000051367	Six1	BB138287	sine oculis-related homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70470424-3	chr14	70469940	70470940	+	781.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12923.0	NM_145981	105653.0	Mm.192598	NM_145981	ENSMUSG00000003469	Phyhip	AW049870|C630010D02Rik|Lnap1ip|PAHX-AP#1|PAHX-AP1	phytanoyl-CoA hydroxylase interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-138840884-4	chr7	138840395	138841395	+	781.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045483, intron 1 of 1)	intron (NM_001045483, intron 1 of 1)	5372.0	NM_001045483	69546.0	Mm.31598	NM_027115	ENSMUSG00000041775	Mapk1ip1	2310009E07Rik|AU043776|MISS	mitogen-activated protein kinase 1 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-33168661-4	chr12	33168151	33169151	+	781.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028139, intron 2 of 3)	L1MB7|LINE|L1	20965.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	3.0	2.5	3.0	1.5	6.0	4.5
Merged-chr4-35228731-2	chr4	35228231	35229231	+	781.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2851.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147519127-2	chr4	147518627	147519627	+	781.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR51B_Mm|LTR|ERVK?	-34150.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-81120870-4	chr3	81120324	81121324	+	781.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	84408.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	18.0	10.5	18.0	16.0	20.5	28.5
Merged-chr11-101641084-2	chr11	101640584	101641584	+	781.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13135.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-8001441-2	chr14	8000941	8001941	+	781.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1447.0	NM_025341	66082.0	Mm.181473	NM_025341	ENSMUSG00000025277	Abhd6	0610041D24Rik|AA673485|AV065425	abhydrolase domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84209155-2	chr8	84208595	84209595	+	781.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037294)	promoter-TSS (NR_037294)	-188.0	NR_037294	100526528.0		NR_037294	ENSMUSG00000105458	Mir3074-2	mir-3074-2|mmu-mir-3074-2	microRNA 3074-2	ncRNA	8.0	41.0	12.0	11.0	28.5	23.5
Merged-chr2-132701616-3	chr2	132701102	132702102	+	781.150024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028637, intron 2 of 2)	intron (NM_028637, intron 2 of 2)	11004.0	NM_028637	73747.0	Mm.284114	NM_028637	ENSMUSG00000044991	1110034G24Rik	-	RIKEN cDNA 1110034G24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99132836-3	chr7	99132367	99133367	+	781.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 1 of 14)	intron (NM_178635, intron 1 of 14)	8277.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	43.5	113.0	83.5	69.5	134.0	93.0
Merged-chr3-35909149-3	chr3	35908661	35909661	+	781.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033623, intron 4 of 6)	intron (NM_033623, intron 4 of 6)	20913.0	NM_033623	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-97364409-2	chr5	97363926	97364926	+	781.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27904.0	NM_001033191	97243.0	Mm.11746	NM_001033191	ENSMUSG00000046000	Naa11	Ard1b|Ard2|C80008	N(alpha)-acetyltransferase 11, NatA catalytic subunit	protein-coding	0.0	0.0	1.5	0.5	4.0	0.5
Merged-chr7-67225064-4	chr7	67224568	67225568	+	781.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357962)	TTS (NM_001357962)	2452.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53688858-3	chr15	53688366	53689366	+	781.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177225, intron 3 of 4)	intron (NM_177225, intron 3 of 4)	-74587.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-106443396-3	chr6	106442957	106443957	+	781.044434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109749, intron 8 of 25)	intron (NM_001109749, intron 8 of 25)	305580.0	NM_008370	16192.0	Mm.3448	NM_008370	ENSMUSG00000005364	Il5ra	CD125|CDw125|Il5r	interleukin 5 receptor, alpha	protein-coding	3.0	1.5	11.0	1.5	10.5	8.0
Merged-chr17-65769610-4	chr17	65769103	65770103	+	781.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	3149.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	9.5	44.5	29.5	16.0	41.0	22.0
Merged-chr17-6316818-3	chr17	6316197	6317197	+	781.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166629, intron 1 of 4)	intron (NM_001166629, intron 1 of 4)	777.0	NM_001166629	100310872.0	Mm.381893	NM_001166629	ENSMUSG00000092074	Dynlt1a	-	dynein light chain Tctex-type 1A	protein-coding	22.0	84.5	73.0	19.0	48.5	53.0
Merged-chr5-122689056-3	chr5	122688555	122689555	+	781.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038845, intron 12 of 12)	MT2B1|LTR|ERVL	6458.0	NR_106195	102465902.0		NR_106195	ENSMUSG00000099324	Mir8115	Gm28012|mmu-mir-8115	microRNA 8115	ncRNA	20.5	11.5	15.5	1.0	8.0	9.5
Merged-chr12-34692544-1	chr12	34692044	34693044	+	781.0	f0_balb.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-163655.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	6.5	16.5	10.5	35.5	29.0	41.5
Merged-chr6-25272042-1	chr6	25271542	25272542	+	781.0	f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-315917.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr1-170796650-1	chr1	170796150	170797150	+	781.0	f0_balb.idr	intron (NM_001081304, intron 10 of 15)	intron (NM_001081304, intron 10 of 15)	71121.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20633545-2	chr11	20633045	20634045	+	781.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038625, intron 1 of 1)	intron (NM_001038625, intron 1 of 1)	1568.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	28.5	74.5	69.0	34.5	84.0	64.0
Merged-chr11-117686240-2	chr11	117685740	117686740	+	781.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 1 of 21)	intron (NM_198022, intron 1 of 21)	31951.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105677220-2	chr5	105676725	105677725	+	781.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-22744.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	3.0	4.5	6.0	3.5	9.0	1.5
Merged-chr17-17837397-2	chr17	17836897	17837897	+	781.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162909, intron 4 of 8)	intron (NM_001162909, intron 4 of 8)	6422.0	NM_001162909	75202.0	Mm.227456	NM_029205	ENSMUSG00000080316	Spaca6	4930546H06Rik|9530079D04Rik|B230206P06Rik|Ncrna00085|SPACA6A|let-7e|mir-125a|mir-99b	sperm acrosome associated 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-91740944-2	chr7	91740445	91741445	+	781.0	f0_balb.idr|f1_balb.idr	intron (NM_011807, intron 3 of 22)	MTD|LTR|ERVL-MaLR	-321449.0	NM_001243046	23859.0	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs large MAGUK scaffold protein 2	protein-coding	1.0	1.5	3.0	4.5	3.5	8.0
Merged-chr10-20772879-2	chr10	20772386	20773386	+	781.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47808.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	95.0	337.5	212.0	102.5	341.5	196.0
Merged-chr4-53113412-2	chr4	53112912	53113912	+	781.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	46483.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	6.0	3.0	12.0	11.0	1.5	9.0
Merged-chr19-3389929-2	chr19	3389429	3390429	+	781.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286558, intron 1 of 8)	ID|SINE|ID	551.0	NM_001286558	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97130861-2	chr11	97130361	97131361	+	781.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15530.0	NM_019507	57765.0	Mm.94519	NM_019507	ENSMUSG00000001444	Tbx21	TBT1|Tbet|Tblym	T-box 21	protein-coding	0.0	0.0	1.5	0.0	0.0	1.5
Merged-chr17-33928670-1	chr17	33928170	33929170	+	781.0	f1_balb.idr	3' UTR (NM_009318, exon 8 of 8)	3' UTR (NM_009318, exon 8 of 8)	-1224.0	NM_009059	19732.0	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	9.0	23.0	9.0	5.5	24.0	14.0
Merged-chr7-66391998-1	chr7	66391498	66392498	+	781.0	f1_c57bl6.idr	3' UTR (NM_053080, exon 13 of 13)	3' UTR (NM_053080, exon 13 of 13)	-3657.0	NM_146191	233328.0	Mm.33284	NM_146191	ENSMUSG00000015133	Lrrk1	AW319595|C230002E15Rik|D130026O16Rik|mKIAA1790	leucine-rich repeat kinase 1	protein-coding	34.0	87.0	78.5	22.0	79.5	55.5
Merged-chr13-93191483-2	chr13	93190983	93191983	+	781.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_154997, intron 1 of 15)	intron (NR_154997, intron 1 of 15)	934.0	NM_001361536	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	144.5	382.0	311.5	177.5	389.5	242.0
Merged-chr19-55257595-5	chr19	55256970	55257970	+	781.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027976, intron 1 of 21)	B4A|SINE|B4	4101.0	NM_027976	433256.0	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-17886538-2	chr5	17886038	17887038	+	781.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	2421.0	NM_001159558	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80267983-2	chr10	80267483	80268483	+	781.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133188, intron 1 of 11)	intron (NM_133188, intron 1 of 11)	2992.0	NM_133188	70248.0	Mm.148693	NM_133188	ENSMUSG00000069565	Dazap1	2410042M16Rik|mPrrp	DAZ associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-119503333-2	chr1	119502833	119503833	+	781.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022327, intron 1 of 4)	ID_B1|SINE|B4	1449.0	NM_022327	64143.0	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-119913798-2	chr1	119913298	119914298	+	781.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175106)	promoter-TSS (NM_175106)	-630.0	NM_175106	66343.0	Mm.49942	NM_175106	ENSMUSG00000036975	Tmem177	2300008B03Rik	transmembrane protein 177	protein-coding	0.0	10.5	0.0	2.0	0.5	2.5
Merged-chr19-6936632-1	chr19	6936132	6937132	+	781.0	f1_balb.idr	Intergenic	B2_Mm1t|SINE|B2	-2117.0	NM_008431	16528.0	Mm.12894	NM_008431	ENSMUSG00000024957	Kcnk4	Catsperz|MLZ-622|TRAAK|TRAAKt|Tex40	potassium channel, subfamily K, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87266969-1	chr17	87266469	87267469	+	781.0	f1_balb.idr	Intergenic	Intergenic	-1022.0	NM_139295	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	3.0	7.0	6.0	5.0	0.0	2.0
Merged-chr9-122861023-1	chr9	122860523	122861523	+	781.0	f0_c57.idr	intron (NM_001359935, intron 2 of 6)	intron (NM_001359935, intron 2 of 6)	4983.0	NM_001359935	235682.0	Mm.326477	NM_173364	ENSMUSG00000047036	Zfp445	AW610627|ZNF168|Znf445|mszf29|mszf50	zinc finger protein 445	protein-coding	0.0	0.0	0.0	6.0	0.0	0.5
Merged-chr9-8042877-2	chr9	8042377	8043377	+	781.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358295)	promoter-TSS (NM_001358295)	-2.0	NR_152397	234912.0	Mm.172430	NM_199017	ENSMUSG00000053070	9230110C19Rik	-	RIKEN cDNA 9230110C19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191277081-2	chr1	191276581	191277581	+	781.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41037.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15810753-3	chr17	15810228	15811228	+	781.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178615, intron 2 of 2)	intron (NM_178615, intron 2 of 2)	15858.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-143994973-2	chr3	143994473	143995473	+	781.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	207359.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19457822-2	chr7	19457322	19458322	+	781.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172279, intron 1 of 16)	intron (NM_172279, intron 1 of 16)	672.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	0.0	1.0	0.0	0.0	1.0	0.0
Merged-chr7-139214288-2	chr7	139213788	139214788	+	781.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162540)	promoter-TSS (NM_001162540)	-981.0	NM_001162540	57740.0	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	0.5	1.5	4.5	0.0	5.0	2.5
Merged-chr14-66242472-1	chr14	66241972	66242972	+	781.0	f0_balb.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-28648.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3623969-2	chr8	3623469	3624469	+	781.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001195244, exon 4 of 4)	3' UTR (NM_001195244, exon 4 of 4)	1080.0	NM_001129804	18545.0	Mm.440882	NM_008790	ENSMUSG00000004630	Pcp2	L7|Pcp-2	Purkinje cell protein 2 (L7)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67262207-1	chr5	67261707	67262707	+	781.0	f1_balb.idr	intron (NM_001285452, intron 1 of 6)	B3A|SINE|B2	1642.0	NM_030108	67878.0	Mm.23217	NM_028975	ENSMUSG00000037720	Tmem33	1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83	transmembrane protein 33	protein-coding	7.5	0.0	2.0	3.5	2.0	5.0
Merged-chr6-136602592-2	chr6	136602092	136603092	+	781.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019426, intron 12 of 14)	intron (NM_019426, intron 12 of 14)	59301.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	1.0	13.5	2.0	1.0	6.5	6.5
Merged-chr6-17634056-3	chr6	17633536	17634536	+	781.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-2974.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	7.0	41.5	10.5	12.0	26.0	17.0
Merged-chr2-59242322-2	chr2	59241822	59242822	+	781.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	81472.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167346994-2	chr2	167346494	167347494	+	781.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	B3|SINE|B2	2184.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80323418-2	chr7	80322918	80323918	+	781.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173445, intron 1 of 8)	intron (NM_173445, intron 1 of 8)	1036.0	NM_173445	269955.0	Mm.474502	NM_173445	ENSMUSG00000038930	Rccd1	5830436H09|E430018M08Rik	RCC1 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-34076921-2	chr3	34076421	34077421	+	781.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001286972)	TTS (NM_001286972)	4433.0	NM_001026211	67713.0	Mm.274266	NM_026332	ENSMUSG00000027679	Dnajc19	1810055D05Rik|AA959924|Tim14	DnaJ heat shock protein family (Hsp40) member C19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-34046006-1	chr15	34045506	34046506	+	781.0	f1_c57bl6.idr	Intergenic	RLTR41|LTR|ERV1	-36713.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	18.0	23.5	23.5	7.0	28.5	22.5
Merged-chr12-33216077-1	chr12	33215577	33216577	+	781.0	f1_c57bl6.idr	intron (NM_028139, intron 2 of 3)	intron (NM_028139, intron 2 of 3)	68391.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.0	1.5	4.5	3.5	7.0	8.0
Merged-chr18-75372008-2	chr18	75371508	75372508	+	781.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042660, intron 2 of 3)	intron (NM_001042660, intron 2 of 3)	4643.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126023360-1	chr4	126022860	126023860	+	781.0	f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-1299.0	NR_045561	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38980934-2	chr6	38980434	38981434	+	781.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	intron (NM_011539, intron 3 of 12)	61948.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122559580-3	chr10	122559110	122560110	+	780.966675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10281.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	17.0	35.5	9.5	4.0	14.0	19.0
Merged-chr1-134784632-4	chr1	134784142	134785142	+	780.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081307, intron 18 of 23)	intron (NM_001081307, intron 18 of 23)	19079.0	NR_015606	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35544945-2	chr17	35544497	35545497	+	780.916687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355275, intron 1 of 1)	intron (NM_001355275, intron 1 of 1)	1896.0	NM_001355275	386463.0	Mm.426664	NM_001008424	ENSMUSG00000039518	Cdsn	AI747712	corneodesmosin	protein-coding	2.0	0.0	0.0	0.0	3.0	0.0
Merged-chr2-167345200-4	chr2	167344680	167345680	+	780.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	3998.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21714636-4	chr19	21714151	21715151	+	780.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61342.0	NM_146096	226016.0	Mm.28796	NM_146096	ENSMUSG00000047368	Abhd17b	5730446C15Rik|Cgi67|Fam108b|Fam108b1	abhydrolase domain containing 17B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-26642415-2	chr14	26641915	26642915	+	780.916687	f1_balb.idr|f1_c57bl6.idr	intron (NM_007479, intron 1 of 5)	B1_Mus1|SINE|Alu	4281.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33997720-2	chr17	33997154	33998154	+	780.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001892, intron 3 of 7)	intron (NM_001001892, intron 3 of 7)	2679.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	25.0	32.0	10.0	5.5	6.0	12.5
Merged-chr19-11098560-4	chr19	11098053	11099053	+	780.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027058, intron 6 of 6)	intron (NM_027058, intron 6 of 6)	-17450.0	NM_022430	64381.0	Mm.34460	NM_022430	ENSMUSG00000024730	Ms4a8a	2010004L09Rik|AI481240|CD20L5|Ms4a8	membrane-spanning 4-domains, subfamily A, member 8A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88234623-2	chr1	88234123	88235123	+	780.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 8 of 41)	intron (NM_001281466, intron 8 of 41)	7603.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-111445963-2	chr11	111445463	111446463	+	780.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	379799.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-62066927-2	chr14	62066427	62067427	+	780.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	226052.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98791013-2	chr11	98790513	98791513	+	780.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4503.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100178576-3	chr7	100178101	100179101	+	780.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190950)	promoter-TSS (NM_001190950)	-82.0	NM_001360467	57442.0	Mm.282386	NM_020574	ENSMUSG00000035165	Kcne3	2210017H05Rik|MiRP2	potassium voltage-gated channel, Isk-related subfamily, gene 3	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr12-79751840-3	chr12	79751376	79752376	+	780.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 8 of 10)	intron (NM_009014, intron 8 of 10)	172857.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125574437-4	chr8	125573895	125574895	+	780.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4532.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	2.5	6.0	2.0	9.5	7.5	3.0
Merged-chr14-26640683-6	chr14	26640203	26641203	+	780.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007479, intron 1 of 5)	intron (NM_007479, intron 1 of 5)	2569.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-101856305-4	chr2	101855783	101856783	+	780.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	-17303.0	NM_001110849	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	4.0	10.0	15.5	3.0	8.5	0.0
Merged-chr2-166714864-3	chr2	166714378	166715378	+	780.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1046.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98167778-4	chr15	98167294	98168294	+	780.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177716)	promoter-TSS (NM_177716)	-12.0	NM_177716	239650.0	Mm.54140	NM_177716	ENSMUSG00000029875	Ccdc184	5630400A08|AI836003	coiled-coil domain containing 184	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75943737-4	chr18	75943236	75944236	+	780.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145356, intron 2 of 4)	MLT1A0|LTR|ERVL-MaLR	-115590.0	NM_001357506	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	5.5	10.0	6.0	0.0	4.0	1.5
Merged-chr6-86004453-4	chr6	86003914	86004914	+	780.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155305)	promoter-TSS (NR_155305)	61.0	NR_155305	75355.0	Mm.142685	NR_155305	ENSMUSG00000106791	4930553P18Rik	-	RIKEN cDNA 4930553P18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-73208346-3	chr8	73207837	73208837	+	780.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317391, intron 3 of 15)	intron (NM_001317391, intron 3 of 15)	145203.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13761145-3	chr9	13760639	13761639	+	780.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_024025, intron 1 of 15)	ID_B1|SINE|B4	11958.0	NM_023858	77116.0	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70231980-3	chr14	70231482	70232482	+	780.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304991, intron 10 of 14)	intron (NM_001304991, intron 10 of 14)	-24311.0	NM_011366	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-38028897-4	chr7	38028460	38029460	+	780.758301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9408.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	9.0	12.0	8.0	13.0	49.0	24.5
Merged-chr17-27704414-2	chr17	27703914	27704914	+	780.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286743, intron 3 of 9)	intron (NM_001286743, intron 3 of 9)	19175.0	NM_178365	23969.0	Mm.4926	NM_011861	ENSMUSG00000040276	Pacsin1	A830061D09Rik|H74|mKIAA1379|syndapin	protein kinase C and casein kinase substrate in neurons 1	protein-coding	0.0	2.5	0.0	0.0	0.0	2.0
Merged-chr14-20735343-2	chr14	20734843	20735843	+	780.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010811)	promoter-TSS (NM_010811)	-781.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55792655-2	chr19	55792155	55793155	+	780.75	f0_balb.idr|f0_c57.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	50845.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15563322-2	chr17	15562822	15563822	+	780.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144809)	promoter-TSS (NM_144809)	1.0	NM_144809	213389.0	Mm.215162	NM_144809	ENSMUSG00000051977	Prdm9	BC012016|Dsbc1|G1-419-29|Meisetz|PRDM9-B|Rcr1|repro7	PR domain containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70777537-2	chr14	70777037	70778037	+	780.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_010071, exon 5 of 5)	exon (NM_010071, exon 5 of 5)	3156.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	4.0	21.5	21.5	14.0	36.0	35.0
Merged-chr7-45365535-2	chr7	45365035	45366035	+	780.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015480)	promoter-TSS (NR_015480)	-626.0	NR_015480	50994.0	Mm.389897	NM_016664	ENSMUSG00000091510	Mtag2	MAG	metastasis associated gene 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23286263-2	chr16	23285763	23286763	+	780.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-4207.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107340946-3	chr11	107340460	107341460	+	780.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	Lx8|LINE|L1	129760.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49633553-3	chr7	49633060	49634060	+	780.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001005232, exon 3 of 4)	exon (NM_001005232, exon 3 of 4)	3275.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-71352306-3	chr10	71351874	71352874	+	780.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027184, intron 1 of 5)	intron (NM_027184, intron 1 of 5)	4611.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-57103154-3	chr2	57102682	57103682	+	780.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11856.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71337720-4	chr17	71337203	71338203	+	780.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028023, intron 2 of 2)	MTC|LTR|ERVL-MaLR	4101.0	NR_028023	100043644.0	Mm.362377	NR_028023		Gm4566	-	ubiquitin specific peptidase 16 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42637018-4	chr10	42636529	42637529	+	780.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41887.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-57183594-2	chr2	57183094	57184094	+	780.700012	f1_balb.idr|f1_c57bl6.idr	intron (NR_040633, intron 1 of 3)	intron (NR_040633, intron 1 of 3)	1763.0	NR_040633	75279.0	Mm.401987	NR_040633	ENSMUSG00000086396	4930555B11Rik	-	RIKEN cDNA 4930555B11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10970147-2	chr16	10969647	10970647	+	780.6999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	B2_Mm2|SINE|B2	22974.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-40306307-3	chr1	40305828	40306828	+	780.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001123382, intron 8 of 10)	RLTR17|LTR|ERVK	-18261.0	NM_001356478	107527.0	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-12491098-2	chr16	12490598	12491598	+	780.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-320292.0	NR_040507	75493.0	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31066118-1	chr16	31065618	31066618	+	780.666687	f1_c57bl6.idr	intron (NM_198626, intron 1 of 3)	ORR1D1|LTR|ERVL-MaLR	15314.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	9.0	62.0	14.0	2.5	13.0	10.5
Merged-chr5-135772074-2	chr5	135771574	135772574	+	780.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_029659, intron 1 of 8)	intron (NM_029659, intron 1 of 8)	6227.0	NM_001289554	76571.0	Mm.247666	NM_029659	ENSMUSG00000019178	Styxl1	1700011C14Rik|Dusp24|Mkstyx	serine/threonine/tyrosine interacting-like 1	protein-coding	1.0	0.0	5.0	0.0	2.0	6.5
Merged-chr6-39232289-2	chr6	39231789	39232789	+	780.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25516.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173802056-1	chr1	173801556	173802556	+	780.666687	f1_balb.idr	Intergenic	Intergenic	-35137.0	NM_008329	15951.0	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	8.0	22.5	12.0	2.0	3.0	0.0
Merged-chr8-35826486-4	chr8	35826021	35827021	+	780.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027998)	promoter-TSS (NM_027998)	38.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	0.0	1.5	1.5	0.0	2.0	0.0
Merged-chr6-129209979-2	chr6	129209479	129210479	+	780.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	28066.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-24627839-4	chr6	24627347	24628347	+	780.654175	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028459, intron 5 of 10)	intron (NM_028459, intron 5 of 10)	30076.0	NM_053098	93677.0	Mm.332941	NM_053098	ENSMUSG00000029683	Lmod2	C-Lmod	leiomodin 2 (cardiac)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38619220-4	chr16	38618707	38619707	+	780.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 7 of 11)	intron (NM_020260, intron 7 of 11)	56393.0	NM_026407	67846.0	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87466448-4	chr6	87465957	87466957	+	780.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_104483, exon 8 of 11)	non-coding (NR_104483, exon 8 of 11)	29870.0	NR_104483	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131436665-3	chr1	131436094	131437094	+	780.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 3 of 22)	intron (NM_001081011, intron 3 of 22)	90767.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	6.0	19.5	11.5	2.0	14.0	16.5
Merged-chr3-28038502-3	chr3	28038017	28039017	+	780.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 6 of 25)	intron (NM_008875, intron 6 of 25)	54346.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17696526-3	chr6	17696030	17697030	+	780.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289624, intron 1 of 15)	intron (NM_001289624, intron 1 of 15)	2536.0	NM_001289625	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107971861-2	chr9	107971361	107972361	+	780.583313	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011634, exon 15 of 15)	3' UTR (NM_011634, exon 15 of 15)	-3706.0	NM_023738	74153.0	Mm.277125	NM_023738	ENSMUSG00000032596	Uba7	1300004C08Rik|Ube1l	ubiquitin-like modifier activating enzyme 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51026925-3	chr14	51026429	51027429	+	780.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14938.0	NM_183032	328401.0	Mm.99528	NM_183032	ENSMUSG00000052382	Rnase9	ESRL|Rak1	ribonuclease, RNase A family, 9 (non-active)	protein-coding	1.0	3.0	5.5	6.0	2.5	3.0
Merged-chr5-140540283-4	chr5	140539773	140540773	+	780.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24794.0	NM_030022	77998.0	Mm.160040	NM_030022	ENSMUSG00000036586	Grifin	E130101O17Rik	galectin-related inter-fiber protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-96870668-3	chr7	96870111	96871111	+	780.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 26 of 32)	MIRc|SINE|MIR	-69062.0	NR_045874	791381.0	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	-	predicted gene 15413	ncRNA	3.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48266750-3	chr17	48266261	48267261	+	780.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033922, intron 2 of 5)	RLTR22_Mur|LTR|ERVK	2466.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-113187988-2	chr7	113187439	113188439	+	780.5	f0_balb.idr|f1_balb.idr	Intergenic	URR1B|DNA|hAT-Charlie	-19526.0	NM_001243048	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	3.5	8.0	1.5	2.5	3.0	6.0
Merged-chr7-46463176-2	chr7	46462676	46463676	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013789, intron 10 of 10)	MIR|SINE|MIR	66708.0	NM_001112739	16502.0	Mm.249386	NM_008421	ENSMUSG00000058975	Kcnc1	C230009H10Rik|KShIIIB|KV4|Kcr2-1|Kv3.1|NGK2|Shaw	potassium voltage gated channel, Shaw-related subfamily, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19277472-2	chr7	19276972	19277972	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177691, intron 4 of 4)	B2_Mm2|SINE|B2	2577.0	NM_177691	232941.0	Mm.134068	NM_177691	ENSMUSG00000030402	Ppm1n	A930002H20|C79127	protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121509577-2	chr10	121509080	121510080	+	780.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33330.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	1.0	5.0	0.0	1.0	5.0	5.5
Merged-chr11-4662471-2	chr11	4661971	4662971	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029291, intron 8 of 19)	intron (NM_029291, intron 8 of 19)	24678.0	NM_029291	75452.0	Mm.439906	NM_029291	ENSMUSG00000020412	Ascc2	1700011I11Rik|2610034L15Rik|AI482016|ASC1p100|AW046480	activating signal cointegrator 1 complex subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-144939215-2	chr7	144938715	144939715	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007631, intron 1 of 4)	intron (NM_007631, intron 1 of 4)	710.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	15.0	54.5	29.0	11.5	39.5	21.0
Merged-chr10-75182623-3	chr10	75182127	75183127	+	780.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081412, exon 23 of 23)	3' UTR (NM_001081412, exon 23 of 23)	-29446.0	NM_153406	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46756603-2	chr8	46756103	46757103	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	16858.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70782038-2	chr8	70781543	70782543	+	780.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_199308, exon 20 of 26)	exon (NM_199308, exon 20 of 26)	5181.0	NR_029440	72093.0	Mm.271208	NR_029440		2010320M18Rik	-	RIKEN cDNA 2010320M18 gene	ncRNA	0.0	1.0	1.0	0.0	5.0	1.0
Merged-chr4-105881975-3	chr4	105881497	105882497	+	780.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16C|LTR|ERVL	-359216.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	0.0	0.0	0.5	2.0	0.0	0.0
Merged-chr2-90743732-2	chr2	90743232	90744232	+	780.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-1638.0	NM_018828	55935.0	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6525524-2	chr11	6525024	6526024	+	780.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045893)	TTS (NR_045893)	3236.0	NR_045893	100041286.0	Mm.459507	NR_045893	ENSMUSG00000085156	Snhg15	Gm11974	small nucleolar RNA host gene 15	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39359548-2	chr18	39359048	39360048	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175164, intron 21 of 22)	intron (NM_175164, intron 21 of 22)	127697.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	3.5	0.0	0.0	1.5	1.0
Merged-chr14-101586214-2	chr14	101585714	101586714	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	22977.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-18469418-1	chr10	18468918	18469918	+	780.5	f0_balb.idr	promoter-TSS (NM_001163592)	promoter-TSS (NM_001163592)	-563.0	NM_001163592	215819.0	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168050107-2	chr2	168049607	168050607	+	780.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-30897.0	NM_021409	58220.0	Mm.292834	NM_021409	ENSMUSG00000044641	Pard6b	AV025615|Par6b	par-6 family cell polarity regulator beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-57706752-2	chr14	57706252	57707252	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015771, intron 2 of 7)	MLTR11A|LTR|ERVK	27666.0	NM_153382	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157424619-2	chr2	157424119	157425119	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 1 of 13)	CpG	326.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-97767853-2	chr1	97767353	97768353	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173760, intron 1 of 27)	intron (NM_173760, intron 1 of 27)	2239.0	NM_173760	227399.0	Mm.220817	NM_173760	ENSMUSG00000040648	Ppip5k2	AW555814|Cfap160|D330021B20|Hisppd1|Vip2|mKIAA0433	diphosphoinositol pentakisphosphate kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-150586001-2	chr5	150585501	150586501	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133898, intron 1 of 4)	intron (NM_133898, intron 1 of 4)	8524.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130849417-2	chr5	130848917	130849917	+	780.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	400625.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27038927-2	chr17	27038427	27039427	+	780.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9668.0	NM_027544	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11442741-2	chr2	11442241	11443241	+	780.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-44241.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166701355-2	chr2	166700855	166701855	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	12477.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130805235-2	chr4	130804735	130805735	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	12698.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31252404-2	chr14	31251904	31252904	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027088, intron 3 of 16)	PB1D9|SINE|Alu	915.0	NM_027088	104416.0	Mm.3779	NM_027088	ENSMUSG00000021901	Bap1	2300006C11Rik|AA989761|AW553466|mKIAA0272|uch-x4	Brca1 associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-77281959-3	chr1	77281492	77282492	+	780.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	214776.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	0.0	15.5	3.5	20.0	27.0	26.5
Merged-chr15-73613932-4	chr15	73613381	73614381	+	780.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033219, intron 1 of 7)	L1MC|LINE|L1	3443.0	NM_001357747	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-133710508-2	chr7	133710008	133711008	+	780.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360164)	promoter-TSS (NM_001360164)	-61.0	NR_153415	22276.0	Mm.3160	NM_009479	ENSMUSG00000030979	Uros	AI415298|UROIIIS|Uros3	uroporphyrinogen III synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-100834597-2	chr6	100834097	100835097	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_182939, intron 1 of 8)	PB1D9|SINE|Alu	959.0	NM_182939	232314.0	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding	10.0	33.5	42.0	12.0	32.5	33.0
Merged-chr16-4673318-2	chr16	4672818	4673818	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030205, intron 3 of 27)	PB1D11|SINE|Alu	6402.0	NM_030205	78885.0	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-86661916-2	chr9	86661416	86662416	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008615, intron 3 of 13)	B3A|SINE|B2	25361.0	NM_001198933	17436.0	Mm.148155	NM_008615	ENSMUSG00000032418	Me1	D9Ertd267e|Mdh-1|Mod-1|Mod1	malic enzyme 1, NADP(+)-dependent, cytosolic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27632150-2	chr3	27631650	27632650	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 3 of 26)	B4A|SINE|B4	-47155.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149462780-2	chr4	149462280	149463280	+	780.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7812.0	NM_022020	63954.0	Mm.46023	NM_022020	ENSMUSG00000028996	Rbp7	1110002J23Rik|CRBP-III	retinol binding protein 7, cellular	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85142989-3	chr12	85142488	85143488	+	780.466675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146244, intron 4 of 10)	intron (NM_146244, intron 4 of 10)	8276.0	NM_146244	238323.0	Mm.44829	NM_146244	ENSMUSG00000019235	Rps6kl1	A830084F09Rik|AW046440	ribosomal protein S6 kinase-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71654736-4	chr8	71654220	71655220	+	780.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 15 of 41)	intron (NM_001029873, intron 15 of 41)	17037.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	4.5	0.0	0.0	0.0	0.0	0.5
Merged-chr8-70674217-4	chr8	70673730	70674730	+	780.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015816, intron 1 of 4)	ID_B1|SINE|B4	999.0	NM_015816	50783.0	Mm.248188	NM_015816	ENSMUSG00000031848	Lsm4	-	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	34.5	68.0	84.0	19.0	68.0	43.5
Merged-chr2-42188226-3	chr2	42187728	42188728	+	780.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053011, intron 2 of 90)	intron (NM_053011, intron 2 of 90)	259340.0	NR_105754	102465171.0		NR_105754	ENSMUSG00000098660	Mir6336	Gm27584|mmu-mir-6336	microRNA 6336	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78610422-3	chr15	78609867	78610867	+	780.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028195, intron 7 of 12)	intron (NM_028195, intron 7 of 12)	13320.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	9.5	37.5	31.5	16.5	39.5	31.5
Merged-chr9-115479070-4	chr9	115478540	115479540	+	780.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97221.0	NR_130329	100316675.0		NR_130329	ENSMUSG00000080409	Mir467h	Mirn467h|mmu-mir-467h	microRNA 467h	ncRNA	7.0	6.0	9.5	3.5	1.0	0.5
Merged-chr15-8642416-3	chr15	8641881	8642881	+	780.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148938, intron 7 of 9)	intron (NM_148938, intron 7 of 9)	68426.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-67621060-3	chr16	67620599	67621599	+	780.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145977)	promoter-TSS (NM_001145977)	-191.0	NM_178721	239857.0	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0.0	6.5	0.0	1.5	5.5	0.0
Merged-chr6-146141425-4	chr6	146140920	146141920	+	780.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 55 of 56)	intron (NM_019923, intron 55 of 56)	207298.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121849626-2	chr5	121849126	121850126	+	780.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359950, intron 1 of 2)	B1_Mus2|SINE|Alu	629.0	NM_001359949	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	5.0	0.0	0.0	1.5	0.0	0.0
Merged-chr6-142735529-4	chr6	142735029	142736029	+	780.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21157.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65801170-3	chr3	65800668	65801668	+	780.366638	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166659, intron 9 of 12)	MTC|LTR|ERVL-MaLR	134940.0	NM_001166659	624866.0	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding	8.5	0.0	3.0	0.0	0.0	1.5
Merged-chr12-112611635-2	chr12	112611135	112612135	+	780.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_198411, exon 21 of 23)	exon (NM_198411, exon 21 of 23)	-8412.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25210486-2	chr12	25209986	25210986	+	780.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	81312.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr1-72855157-2	chr1	72854657	72855657	+	780.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19708.0	NM_010518	16011.0	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-144770648-5	chr5	144770114	144771114	+	780.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081362, intron 1 of 70)	ID_B1|SINE|B4	1822.0	NM_001081362	100683.0	Mm.273570	NM_001081362	ENSMUSG00000045482	Trrap	AI481500	transformation/transcription domain-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40743688-2	chr19	40743188	40744188	+	780.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83918.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-119238086-3	chr12	119237579	119238579	+	780.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177290, exon 1 of 14)	5' UTR (NM_177290, exon 1 of 14)	197.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122971040-2	chr7	122970540	122971540	+	780.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045614)	promoter-TSS (NR_045614)	476.0	NM_175023	19647.0	Mm.4480	NM_011247	ENSMUSG00000030779	Rbbp6	4933422O15Rik|AI316869|BB233631|C030034J04Rik|C77662|P2P-R|PACT	retinoblastoma binding protein 6, ubiquitin ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-77100615-3	chr12	77100121	77101121	+	780.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137483.0	NM_001252614	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-16363910-3	chr9	16363398	16364398	+	780.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 1 of 24)	intron (NM_001080814, intron 1 of 24)	14333.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47050484-2	chr19	47049984	47050984	+	780.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_027654, exon 1 of 10)	exon (NM_027654, exon 1 of 10)	422.0	NM_001360632	71041.0	Mm.35413	NM_027654	ENSMUSG00000025050	Pcgf6	4933407A11Rik|AI604840|MBLR|Rnf134	polycomb group ring finger 6	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr9-22388095-3	chr9	22387583	22388583	+	780.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028390, intron 1 of 23)	intron (NM_028390, intron 1 of 23)	1123.0	NM_028390	68743.0	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63121486-3	chr14	63120920	63121920	+	780.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1042.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4_JH584295_random-1859-1	chr4_JH584295_random	1359	2359	+	780.333313	f0_c57.idr		GC_rich|Low_complexity|Low_complexity											0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-4973526-4	chr6	4973029	4974029	+	780.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	70209.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-167392905-3	chr1	167392408	167393408	+	780.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025569, intron 1 of 5)	intron (NM_025569, intron 1 of 5)	889.0	NM_025569	66447.0	Mm.218286	NM_025569	ENSMUSG00000026688	Mgst3	2010012L10Rik|2010306B17Rik|2700004G04Rik|AA516734|GST-III	microsomal glutathione S-transferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102619813-3	chr7	102619292	102620292	+	780.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR34B_MM|LTR|ERVK	-4805.0	NM_207621	233578.0	Mm.377251	NM_207621	ENSMUSG00000073972	Olfr553	MOR25-2	olfactory receptor 553	protein-coding	1.0	0.5	7.5	1.0	0.5	7.5
Merged-chr15-80038010-3	chr15	80037550	80038550	+	780.255554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23242.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	59.0	30.5	33.0	38.5	43.5	34.0
Merged-chr17-26628914-2	chr17	26628414	26629414	+	780.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 4 of 9)	MIR|SINE|MIR	-47482.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57744587-2	chr10	57744087	57745087	+	780.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40336.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37634847-2	chr1	37634347	37635347	+	780.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_028096, intron 3 of 9)	B2_Mm2|SINE|B2	84964.0	NM_028096	72097.0	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80076994-4	chr15	80076541	80077541	+	780.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013762)	TTS (NM_013762)	1538.0	NR_028282	100302601.0		NR_028282	ENSMUSG00000077734	Snord83b	MBII-10	small nucleolar RNA, C/D box 83B	snoRNA	20.5	86.5	48.0	35.5	70.0	36.5
Merged-chr5-31940874-3	chr5	31940377	31941377	+	780.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 7 of 11)	intron (NM_144541, intron 7 of 11)	-195595.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	6.0	9.0	12.0	7.0	20.0	10.5
Merged-chr5-140646940-2	chr5	140646440	140647440	+	780.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308040, intron 1 of 12)	intron (NM_001308040, intron 1 of 12)	2091.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-62965612-2	chr14	62965159	62966159	+	780.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18851.0	NM_001037751	432867.0	Mm.99387	NM_001037751	ENSMUSG00000075574	Defb48	Defb42|EG432867	defensin beta 48	protein-coding	0.0	6.0	5.5	0.0	1.0	1.0
Merged-chr18-9507902-3	chr18	9507385	9508385	+	780.244446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57731.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0.5	0.0	1.5	3.0	0.0	0.0
Merged-chr5-123019501-3	chr5	123018997	123019997	+	780.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175423, intron 1 of 1)	intron (NM_175423, intron 1 of 1)	4423.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-107611432-3	chr5	107610939	107611939	+	780.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359917, intron 6 of 12)	intron (NM_001359917, intron 6 of 12)	13478.0	NM_001359916	231571.0	Mm.482420	NM_144911	ENSMUSG00000033773	Rpap2	AW060207	RNA polymerase II associated protein 2	protein-coding	0.0	11.5	4.5	0.0	10.5	0.0
Merged-chr16-64801831-3	chr16	64801328	64802328	+	780.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347245, intron 3 of 8)	ORR1A2|LTR|ERVL-MaLR	-15507.0	NM_028059	72020.0	Mm.25960	NM_028059	ENSMUSG00000047141	Zfp654	1600021C16Rik|1810008K20Rik|433036|Gm5488|Znf654	zinc finger protein 654	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10486574-3	chr19	10486073	10487073	+	780.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3676.0	NM_133689	67752.0	Mm.25939	NM_133689	ENSMUSG00000035179	Ppp1r32	4930579J09Rik|AU015816|IIIG9|IIIG9L|IIIG9S	protein phosphatase 1, regulatory subunit 32	protein-coding	0.0	0.0	0.0	0.0	8.0	2.0
Merged-chr7-3630616-4	chr7	3630148	3631148	+	780.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290381)	promoter-TSS (NM_001290381)	663.0	NM_027328	68988.0	Mm.246863	NM_027328	ENSMUSG00000008373	Prpf31	1500019O16Rik|2810404O06Rik|AW554706|PRP31|RP11	pre-mRNA processing factor 31	protein-coding	5.5	6.5	6.0	1.5	33.0	10.0
Merged-chr4-42954557-4	chr4	42954043	42955043	+	780.174988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355439, intron 3 of 4)	intron (NM_001355439, intron 3 of 4)	4147.0	NM_001355440	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	0.0	0.0	3.5	0.0	8.0	0.5
Merged-chr18-11915722-3	chr18	11915229	11916229	+	780.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146287, intron 4 of 9)	intron (NM_001146287, intron 4 of 9)	-75291.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	2.5	2.5	0.5	0.0	7.0	0.0
Merged-chr15-38245594-2	chr15	38245094	38246094	+	780.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26391.0	NM_008757	18285.0	Mm.252830	NM_008757	ENSMUSG00000061923	Odf1	-	outer dense fiber of sperm tails 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-7535322-4	chr3	7534804	7535804	+	780.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173181, intron 7 of 8)	intron (NM_173181, intron 7 of 8)	31878.0	NM_173181	67306.0	Mm.332366	NM_173181	ENSMUSG00000043542	Zc2hc1a	3110050N22Rik|AI790358|AU023959|Fam164a	zinc finger, C2HC-type containing 1A	protein-coding	6.0	0.0	5.0	4.0	11.0	0.0
Merged-chr1-138174304-3	chr1	138173811	138174811	+	780.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	815.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-4811408-3	chr6	4810912	4811912	+	780.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64106.0	NM_130877	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	0.0	0.0	0.0	0.0	1.0	1.0
Merged-chr15-103510986-2	chr15	103510486	103511486	+	780.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357980, intron 1 of 14)	intron (NM_001357980, intron 1 of 14)	3860.0	NM_001357980	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122472056-2	chr8	122471556	122472556	+	780.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033142, intron 1 of 5)	MERVL_2A-int|LTR|ERVL	4008.0	NM_001033142	68718.0	Mm.34356	NM_001033142	ENSMUSG00000014470	Rnf166	1110031E24Rik|AW555115|Zfp313l	ring finger protein 166	protein-coding	0.5	0.0	0.0	0.5	0.0	0.0
Merged-chr7-127919888-2	chr7	127919388	127920388	+	780.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360699, intron 3 of 10)	B1_Mur4|SINE|Alu	6874.0	NM_001360699	67773.0	Mm.425492	NM_026370	ENSMUSG00000030801	Kat8	2010203C02Rik|5830450F21Rik|D7Ertd629e|MOF|MYST-1|Myst1	K(lysine) acetyltransferase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29071648-2	chr17	29071148	29072148	+	780.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_036469, intron 1 of 1)	intron (NR_036469, intron 1 of 1)	7478.0	NR_036469	100504267.0	Mm.438550	NR_036469	ENSMUSG00000085912	Trp53cor1	Gm16197|linc-p21|lincRNA-p21	tumor protein p53 pathway corepressor 1	ncRNA	1.5	4.5	5.5	0.0	6.5	0.5
Merged-chr12-40486653-4	chr12	40486171	40487171	+	780.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	40618.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35093829-3	chr7	35093330	35094330	+	780.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B4|LTR|ERVL	-25463.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	2.0	10.5	0.0	0.0	0.0	0.0
Merged-chr15-66980021-3	chr15	66979515	66980515	+	780.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10374.0	NM_008681	17988.0	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	0.0	0.0	2.0	1.5	4.0	2.0
Merged-chr14-30869433-3	chr14	30868943	30869943	+	780.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028839, intron 4 of 7)	intron (NM_028839, intron 4 of 7)	-9814.0	NM_181390	66175.0	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	0.0	7.5	4.0	4.5	0.0	2.0
Merged-chr4-46458632-3	chr4	46458124	46459124	+	780.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130889, intron 1 of 6)	intron (NM_130889, intron 1 of 6)	7698.0	NM_130889	67628.0	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-32902707-3	chr13	32902201	32903201	+	780.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT-int|LTR|ERVL-MaLR	-4561.0	NM_173051	380839.0	Mm.250802	NM_173051	ENSMUSG00000079049	Serpinb1c	EIC|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1c	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81948732-4	chr15	81948243	81949243	+	780.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145473, intron 3 of 3)	intron (NM_145473, intron 3 of 3)	11984.0	NM_145473	105859.0	Mm.22524	NM_145473	ENSMUSG00000042109	Csdc2	AI415250|AI481750|Pippin	cold shock domain containing C2, RNA binding	protein-coding	0.0	3.0	3.5	0.0	0.5	0.0
Merged-chr7-89236823-4	chr7	89236331	89237331	+	780.087524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 5 of 14)	intron (NM_001360746, intron 5 of 14)	101956.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-147084181-2	chr2	147083755	147084755	+	780.083374	f1_balb.idr|f1_c57bl6.idr	exon (NM_023504, exon 2 of 2)	exon (NM_023504, exon 2 of 2)	1090.0	NM_023504	228731.0	Mm.315498	NM_023504	ENSMUSG00000054160	Nkx2-4	1700001P03Rik|Nkx-2.4|tinman	NK2 homeobox 4	protein-coding	0.0	7.5	0.0	0.0	0.0	0.0
Merged-chr4-8645711-3	chr4	8645213	8646213	+	780.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44693.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25200530-4	chr8	25200052	25201052	+	780.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177089, intron 1 of 12)	intron (NM_177089, intron 1 of 12)	990.0	NM_199323	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127338401-6	chr2	127337954	127338954	+	780.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172539)	promoter-TSS (NM_172539)	-185.0	NM_172539	215095.0	Mm.31313	NM_172539	ENSMUSG00000050468	Astl	7420700F21|C87576|Sas1b	astacin-like metalloendopeptidase (M12 family)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129678065-3	chr4	129677548	129678548	+	780.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356378, intron 9 of 9)	intron (NM_001356378, intron 9 of 9)	-5281.0	NM_008468	16650.0	Mm.202358	NM_008468	ENSMUSG00000003731	Kpna6	IPOA7|Kpna5|NPI-2	karyopherin (importin) alpha 6	protein-coding	4.5	3.0	11.0	32.0	67.0	27.5
Merged-chr5-121398694-3	chr5	121398184	121399184	+	780.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172722, intron 1 of 23)	intron (NM_172722, intron 1 of 23)	702.0	NM_172722	231713.0	Mm.33919	NM_172722	ENSMUSG00000042719	Naa25	4833422K13Rik|A630046C11|AI450868|C330023M02Rik|Mdm20	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding	2.0	5.0	3.0	0.0	1.5	6.5
Merged-chr13-119617403-3	chr13	119616911	119617911	+	780.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6408.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-44438609-3	chr17	44438123	44439123	+	780.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	250051.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-140245555-6	chr1	140244973	140245973	+	780.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081027)	promoter-TSS (NM_001081027)	-784.0	NM_001081027	240776.0	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71804254-4	chr6	71803741	71804741	+	780.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178608, intron 6 of 6)	intron (NM_178608, intron 6 of 6)	19543.0	NM_025430	66223.0	Mm.28579	NM_025430	ENSMUSG00000052962	Mrpl35	1110066C01Rik	mitochondrial ribosomal protein L35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-92486569-3	chr2	92486046	92487046	+	780.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26028.0	NM_145832	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45742615-2	chr17	45742115	45743115	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 1 of 4)	L1MB3|LINE|L1	8109.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	0.0	1.0	0.5	0.0	0.0	2.5
Merged-chr3-152480657-2	chr3	152480157	152481157	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081277, intron 11 of 13)	B4A|SINE|B4	83973.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55651491-2	chr19	55650991	55651991	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	MLT1D|LTR|ERVL-MaLR	50713.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108169093-2	chr12	108168593	108169593	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028262, intron 1 of 12)	intron (NM_028262, intron 1 of 12)	10191.0	NM_028262	52690.0	Mm.159185	NM_028262	ENSMUSG00000056770	Setd3	2610102I01Rik|2610305M23Rik|6030490B17Rik|D12Ertd771e	SET domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94606810-2	chr10	94606310	94607310	+	780.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20611.0	NR_106070	102466817.0		NR_106070	ENSMUSG00000098544	Mir7211	Gm27536|mmu-mir-7211	microRNA 7211	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105903444-2	chr3	105902944	105903944	+	780.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009631)	promoter-TSS (NM_009631)	-977.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34247173-2	chr17	34246673	34247673	+	780.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	8268.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	11.5	6.5	1.5	0.5	4.5	9.0
Merged-chr1-166340862-2	chr1	166340362	166341362	+	780.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-38305.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33911302-2	chr16	33910802	33911802	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 9 of 14)	B1_Mus1|SINE|Alu	55736.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-103335988-2	chr12	103335488	103336488	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 3 of 9)	intron (NM_023049, intron 3 of 9)	20013.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35142082-1	chr7	35141582	35142582	+	780.0	f1_balb.idr	Intergenic	Intergenic	22789.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	0.0	0.0	1.5	0.0	0.0	1.5
Merged-chr2-90440661-2	chr2	90440161	90441161	+	780.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001135657, exon 22 of 26)	exon (NM_001135657, exon 22 of 26)	38513.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137529600-2	chr5	137529100	137530100	+	780.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105846)	promoter-TSS (NR_105846)	-6.0	NR_105846	102465227.0		NR_105846	ENSMUSG00000098597	Mir6418	Gm27629|mir-6418|mmu-mir-6418	microRNA 6418	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-26455611-2	chr12	26455111	26456111	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021384, intron 1 of 5)	(CA)n|Simple_repeat|Simple_repeat	841.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	20.5	81.0	33.0	26.0	87.5	64.5
Merged-chr1-177176304-2	chr1	177175804	177176804	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011785, intron 1 of 12)	intron (NM_011785, intron 1 of 12)	72463.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111634792-2	chr13	111634292	111635292	+	780.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	GC_rich|Low_complexity|Low_complexity	-51386.0	NM_172593	218613.0	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80873057-3	chr10	80872560	80873560	+	780.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6756.0	NM_001081688	432478.0	Mm.235302	NM_001081688	ENSMUSG00000059406	Tmprss9	Serase-1B	transmembrane protease, serine 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88461647-4	chr3	88461131	88462131	+	780.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163489)	promoter-TSS (NM_001163489)	-449.0	NM_001163489	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100530347-1	chr7	100529847	100530847	+	780.0	f1_balb.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-6753.0	NM_183270	68185.0	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	0.0	9.0	3.5	11.0	10.5	8.0
Merged-chr5-114439798-2	chr5	114439298	114440298	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029956, intron 2 of 8)	MER90|LTR|ERV1	4229.0	NM_029956	77697.0	Mm.105182	NM_029956	ENSMUSG00000029575	Mmab	9130222L19Rik|ATR	methylmalonic aciduria (cobalamin deficiency) cblB type homolog (human)	protein-coding	0.0	2.0	0.0	0.0	0.0	0.0
Merged-chr7-105367841-2	chr7	105367341	105368341	+	780.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146355)	promoter-TSS (NM_146355)	-487.0	NM_146355	258352.0	Mm.377449	NM_146355	ENSMUSG00000073906	Olfr692	MOR36-1	olfactory receptor 692	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65942213-1	chr3	65941713	65942713	+	780.0	f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	16036.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	9.0	4.5	2.0	3.0	0.5	1.0
Merged-chr2-25319172-2	chr2	25318672	25319672	+	780.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008169)	promoter-TSS (NM_008169)	15.0	NM_008169	14810.0	Mm.278672	NM_008169	ENSMUSG00000026959	Grin1	GluN1|GluRdelta1|GluRzeta1|M100174|NMD-R1|NMDAR1|NR1|Nmdar|Rgsc174	glutamate receptor, ionotropic, NMDA1 (zeta 1)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-43806144-4	chr2	43805622	43806622	+	780.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 2 of 14)	intron (NM_001301831, intron 2 of 14)	57298.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91480601-2	chr2	91480101	91481101	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 14 of 37)	intron (NM_172668, intron 14 of 37)	23070.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	0.0	3.0	1.5	1.0	1.0	7.5
Merged-chr2-117040326-2	chr2	117039826	117040826	+	780.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80745.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122685895-1	chr5	122685395	122686395	+	780.0	f1_balb.idr	intron (NM_001038845, intron 12 of 12)	MTD|LTR|ERVL-MaLR	3298.0	NR_106195	102465902.0		NR_106195	ENSMUSG00000099324	Mir8115	Gm28012|mmu-mir-8115	microRNA 8115	ncRNA	10.5	20.5	8.5	4.5	5.5	4.5
Merged-chr6-143073602-3	chr6	143073087	143074087	+	780.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362115, intron 7 of 26)	intron (NM_001362115, intron 7 of 26)	26565.0	NM_001362118	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166907897-2	chr2	166907397	166908397	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023565, intron 1 of 24)	intron (NM_023565, intron 1 of 24)	1801.0	NM_023565	110750.0	Mm.22417	NM_023565	ENSMUSG00000002718	Cse1l	2610100P18Rik|AA407533|Capts|Cas|Xpo2	chromosome segregation 1-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102298165-2	chr11	102297665	102298665	+	780.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-1536.0	NM_001098837	217218.0	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-48448061-2	chr9	48447560	48448560	+	780.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6284.0	NR_026561	667933.0	Mm.491076	NR_026561		Gm8884	EG667933	predicted gene 8884	ncRNA	0.0	0.0	5.5	0.0	7.0	1.5
Merged-chr6-78353090-1	chr6	78352590	78353590	+	780.0	f1_c57bl6.idr	Intergenic	L1Md_T|LINE|L1	-17795.0	NM_011036	18489.0	Mm.2553	NM_011036	ENSMUSG00000071356	Reg3b	HIP|PAP1|Pap|REG-III	regenerating islet-derived 3 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-34738878-1	chr16	34738378	34739378	+	780.0	f0_balb.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-46072.0	NM_139300	107589.0	Mm.33360	NM_139300	ENSMUSG00000022836	Mylk	9530072E15Rik|A930019C19Rik|AW489456|KRP|MLCK108|MLCK210|Mlck|nmMlck|smMLCK	myosin, light polypeptide kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87435300-2	chr16	87434800	87435800	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016924, intron 4 of 4)	intron (NM_016924, intron 4 of 4)	-2694.0	NM_001081068	78913.0	Mm.249005	NM_001081068	ENSMUSG00000052299	Ltn1	4930528H02Rik|AV266914|C87237|Listerin|Rnf160|Zfp294	listerin E3 ubiquitin protein ligase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105240979-2	chr4	105240479	105241479	+	780.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	83632.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.0	1.0	0.0	0.0	1.0	0.0
Merged-chr13-23687440-3	chr13	23686828	23687828	+	780.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023422, intron 1 of 1)	intron (NM_023422, intron 1 of 1)	3129.0	NM_023422	68024.0	Mm.261676	NM_023422	ENSMUSG00000018102	Hist1h2bc	2610022J01Rik|H2bfs|R74621	histone cluster 1, H2bc	protein-coding	1.5	0.0	0.0	0.0	0.5	3.0
Merged-chr5-66046759-2	chr5	66046259	66047259	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	-42474.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	3.0	3.0	0.5	2.0	2.0	3.0
Merged-chr15-100810390-2	chr15	100809892	100810892	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021530, intron 20 of 24)	intron (NM_021530, intron 20 of 24)	29138.0	NM_001347102	59033.0	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr19-38028447-1	chr19	38027947	38028947	+	780.0	f1_c57bl6.idr	intron (NM_001302140, intron 1 of 53)	intron (NM_001302140, intron 1 of 53)	15130.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	31.0	32.0	14.5	3.5	41.0	17.5
Merged-chr12-112670347-2	chr12	112669847	112670847	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331107, intron 2 of 13)	intron (NM_001331107, intron 2 of 13)	3929.0	NM_001165894	11651.0	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75337400-2	chr11	75336900	75337900	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026653, intron 4 of 16)	intron (NM_026653, intron 4 of 16)	10983.0	NM_001164223	68275.0	Mm.102574	NM_026653	ENSMUSG00000000751	Rpa1	5031405K23Rik|70kDa|AA589576|AW557552|RF-A|RP-A|Rpa	replication protein A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68063653-4	chr10	68063175	68064175	+	780.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie2b|DNA|hAT-Charlie	84105.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	5.5	18.5	5.5	36.5	64.5	48.5
Merged-chr19-32832880-2	chr19	32832380	32833380	+	780.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	75303.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58131194-1	chr13	58130694	58131694	+	780.0	f1_balb.idr	Intergenic	Intergenic	-2638.0	NM_029872	77134.0	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	0.0	5.0	7.5	3.0	2.0	4.0
Merged-chr1-93166036-1	chr1	93165536	93166536	+	780.0	f0_balb.idr	Intergenic	L1MB3|LINE|L1	-2387.0	NM_001310428	381284.0	Mm.193346	NM_001310428	ENSMUSG00000084989	Crocc2	E030010N08Rik|Gm976	ciliary rootlet coiled-coil, rootletin family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44382970-2	chr19	44382462	44383462	+	780.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	24747.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.0	1.5	0.0	0.0	0.0	6.0
Merged-chr11-107305913-2	chr11	107305413	107306413	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	intron (NR_153311, intron 4 of 9)	-116532.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139234682-1	chr4	139234182	139235182	+	780.0	f1_balb.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	40571.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	40.5	100.0	54.5	66.5	81.5	57.5
Merged-chr14-73172028-2	chr14	73171528	73172528	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134083, intron 10 of 14)	intron (NM_134083, intron 10 of 14)	29243.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53172026-2	chr18	53171526	53172526	+	780.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4266.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23499815-2	chr11	23499315	23500315	+	780.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1776.0	NM_172391	268390.0	Mm.13148	NM_172391	ENSMUSG00000020288	Ahsa2	-	AHA1, activator of heat shock protein ATPase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63461222-2	chr14	63460722	63461722	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177628, intron 3 of 3)	intron (NM_177628, intron 3 of 3)	24828.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	1.0	6.5	3.0	1.0	6.0	0.5
Merged-chr8-56313179-3	chr8	56312674	56313674	+	780.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008278, intron 4 of 6)	intron (NM_008278, intron 4 of 6)	18622.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	1.0	22.0	8.5	4.0	10.0	1.5
Merged-chr5-20866174-2	chr5	20865674	20866674	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172992, intron 1 of 17)	B4A|SINE|B4	15950.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104678260-1	chr9	104677760	104678760	+	780.0	f0_balb.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	108777.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	8.5	13.0	0.0	1.5	3.0	2.5
Merged-chr9-118614440-2	chr9	118613940	118614940	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	7731.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75833515-2	chr14	75833015	75834015	+	780.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	11449.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-110971473-3	chr8	110970929	110971929	+	780.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009179, exon 7 of 7)	3' UTR (NM_009179, exon 7 of 7)	26394.0	NM_007916	13680.0	Mm.287901	NM_007916	ENSMUSG00000015023	Ddx19a	DBP5|Ddx19|Eif4a-rs1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a	protein-coding	0.5	0.0	0.5	0.5	0.5	3.5
Merged-chr17-67053038-2	chr17	67052538	67053538	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 5 of 32)	intron (NM_001357625, intron 5 of 32)	-26803.0	NR_049205	100885844.0		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97406523-1	chr6	97406023	97407023	+	780.0	f0_balb.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	52763.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156040053-2	chr1	156039442	156040442	+	780.0	f0_c57.idr|f1_balb.idr	promoter-TSS (NM_001358627)	promoter-TSS (NM_001358627)	-898.0	NM_001358626	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	19.5	40.5	35.5	15.0	47.5	16.0
Merged-chr2-6585171-2	chr2	6584671	6585671	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 11 of 15)	intron (NM_001110232, intron 11 of 15)	136491.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133007162-2	chr4	133006658	133007658	+	780.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-4348.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	6.5	8.0	3.5	1.0	13.0	3.0
Merged-chr9-106223739-1	chr9	106223239	106224239	+	780.0	f1_balb.idr	exon (NM_031178, exon 2 of 2)	exon (NM_031178, exon 2 of 2)	1141.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	4.5	17.0	19.0	2.5	33.0	31.0
Merged-chr19-10858056-2	chr19	10857556	10858556	+	780.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023044)	TTS (NM_023044)	11723.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-142688970-1	chr1	142688470	142689470	+	780.0	f0_balb.idr	Intergenic	Intergenic	-951727.0	NM_020025	26878.0	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9912431-2	chr19	9911931	9912931	+	780.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12898.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95003549-1	chr3	95003049	95004049	+	780.0	f1_balb.idr	promoter-TSS (NR_105980)	promoter-TSS (NR_105980)	-619.0	NR_105980	102465613.0		NR_105980	ENSMUSG00000099033	Mir7013	Gm27488|mmu-mir-7013	microRNA 7013	ncRNA	0.0	3.5	0.0	0.0	1.0	2.5
Merged-chr4-138464818-1	chr4	138464318	138465318	+	780.0	f1_balb.idr	Intergenic	Intergenic	9670.0	NM_025451	66259.0	Mm.41603	NM_025451	ENSMUSG00000046447	Camk2n1	1810006K23Rik|AI848599|AI891706	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding	0.0	4.0	0.0	5.5	5.0	0.5
Merged-chr16-42911977-2	chr16	42911477	42912477	+	780.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040402)	promoter-TSS (NR_040402)	93.0	NR_040402	100503040.0	Mm.490721	NR_040402		Gm19522	-	predicted gene, 19522	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101736218-4	chr13	101735728	101736728	+	779.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	31989.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25732255-3	chr17	25731752	25732752	+	779.938904	f0_balb.idr|f0_c57.idr|f1_balb.idr	TTS (NM_001357176)	TTS (NM_001357176)	-3788.0	NM_177822	328783.0	Mm.183275	NM_177822	ENSMUSG00000041062	Mslnl	4732467B22	mesothelin-like	protein-coding	9.5	1.0	7.0	11.0	0.5	0.0
Merged-chr1-177726282-4	chr1	177725782	177726782	+	779.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR34D_MM|LTR|ERVK	-3532.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127055600-3	chr10	127055114	127056114	+	779.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033262)	TTS (NM_001033262)	4570.0	NM_001033262	216438.0	Mm.37892	NM_001033262	ENSMUSG00000040502	March9	AI608492|BC019560	membrane-associated ring finger (C3HC4) 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46215530-4	chr11	46215048	46216048	+	779.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252459, intron 26 of 30)	MER20|DNA|hAT-Charlie	-20009.0	NM_177075	320116.0	Mm.39600	NM_177075	ENSMUSG00000048721	Fndc9	C030019I05Rik	fibronectin type III domain containing 9	protein-coding	4.5	0.0	4.5	4.5	0.0	4.5
Merged-chr4-95107017-2	chr4	95106517	95107517	+	779.916687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54795.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.0	0.0	2.0	0.0	2.0	2.0
Merged-chr5-74729647-3	chr5	74729135	74730135	+	779.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26732.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	3.5	7.0	2.0	3.0	5.0	4.0
Merged-chr4-101174553-4	chr4	101174057	101175057	+	779.912476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 9 of 24)	intron (NM_146145, intron 9 of 24)	90725.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-58564614-3	chr18	58564102	58565102	+	779.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081072, intron 1 of 9)	intron (NM_001081072, intron 1 of 9)	8362.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	17.0	7.5	9.0	15.0	15.0	14.5
Merged-chr1-173878011-3	chr1	173877455	173878455	+	779.849976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170853, intron 2 of 9)	Lx8b|LINE|L1	2232.0	NM_001170853	100040462.0	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	8.0	30.5	27.0	5.5	22.0	7.0
Merged-chr4-47400072-2	chr4	47399572	47400572	+	779.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312869, intron 3 of 7)	intron (NM_001312869, intron 3 of 7)	13856.0	NM_001312869	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr16-24626781-2	chr16	24626281	24627281	+	779.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-95074.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36189522-2	chr17	36189022	36190022	+	779.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008208, intron 2 of 5)	intron (NM_008208, intron 2 of 5)	629.0	NM_008208	15043.0	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34251811-4	chr17	34251306	34252306	+	779.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11421.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.0	3.5	7.0	7.0	39.5	17.5
Merged-chr1-45817089-3	chr1	45816591	45817591	+	779.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028599, intron 13 of 20)	intron (NM_028599, intron 13 of 20)	21925.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121388129-4	chr5	121387586	121388586	+	779.803589	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2471.0	NM_172275	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	95.0	172.0	121.0	71.0	131.5	95.5
Merged-chr10-66851225-5	chr10	66850727	66851727	+	779.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	69157.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36998224-3	chr5	36997612	36998612	+	779.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9130.0	NM_011716	22393.0	Mm.20916	NM_011716	ENSMUSG00000039474	Wfs1	AI481085|wolframin	wolframin ER transmembrane glycoprotein	protein-coding	0.0	0.0	4.0	3.0	0.0	0.0
Merged-chr4-139598637-3	chr4	139598130	139599130	+	779.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205173, intron 1 of 8)	MLTR14|LTR|ERV1	23910.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	112.0	188.5	174.0	48.0	123.0	136.0
Merged-chr7-67246897-3	chr7	67246366	67247366	+	779.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 8 of 11)	L1MCa|LINE|L1	24250.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57383742-4	chr16	57383208	57384208	+	779.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	30431.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167890241-2	chr2	167889741	167890741	+	779.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-42086.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58521194-3	chr13	58520722	58521722	+	779.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	89655.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58586773-2	chr1	58586273	58587273	+	779.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172513)	promoter-TSS (NM_172513)	376.0	NM_025597	66495.0	Mm.2033	NM_025597	ENSMUSG00000026032	Ndufb3	2700033I16Rik|CI-B12	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147340455-2	chr4	147339955	147340955	+	779.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	B3|SINE|B2	164589.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82942043-2	chr18	82941543	82942543	+	779.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177464, intron 1 of 5)	intron (NM_001177464, intron 1 of 5)	-21483.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152120628-2	chr4	152120128	152121128	+	779.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291010)	TTS (NM_001291010)	4285.0	NM_033042	85030.0	Mm.101198	NM_033042	ENSMUSG00000024793	Tnfrsf25	APO-3|DDR3|DR3|LARD|TR3|TRAMP|Tnfrsf12|WSL-1|WSL-LR|Wsl	tumor necrosis factor receptor superfamily, member 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80506458-4	chr10	80505965	80506965	+	779.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139226, intron 1 of 1)	intron (NM_139226, intron 1 of 1)	11559.0	NM_139226	246086.0	Mm.250572	NM_139226	ENSMUSG00000045518	Onecut3	OC-3|Oc3	one cut domain, family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-99714205-2	chr4	99713705	99714705	+	779.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1425.0	NM_001081264	320438.0	Mm.32408	NM_001081264	ENSMUSG00000073792	Alg6	E230028F23Rik	asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71392778-2	chr2	71392278	71393278	+	779.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_026115, intron 2 of 10)	intron (NM_026115, intron 2 of 10)	3518.0	NM_026115	107435.0	Mm.272472	NM_026115	ENSMUSG00000027018	Hat1	2410071B14Rik|AA536933|Hat-1|KAT1	histone aminotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-69421777-4	chr17	69421284	69422284	+	779.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5337.0	NR_026848	77533.0	Mm.266592	NR_026848		C030034I22Rik	-	RIKEN cDNA C030034I22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40350884-3	chr9	40350393	40351393	+	779.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 2 of 20)	intron (NM_001357617, intron 2 of 20)	-4648.0	NM_001357619	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.5	0.5	0.0	0.5	0.5	0.0
Merged-chr3-121329778-4	chr3	121329300	121330300	+	779.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155539, intron 2 of 2)	intron (NR_155539, intron 2 of 2)	38060.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	9.5	12.0	8.5	6.0	2.0	9.0
Merged-chr16-18406085-3	chr16	18405581	18406581	+	779.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007744)	TTS (NM_007744)	7413.0	NM_001111063	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12940507-3	chr18	12940011	12941011	+	779.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207530, intron 1 of 27)	intron (NM_207530, intron 1 of 27)	1330.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80250410-3	chr7	80249913	80250913	+	779.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177765, intron 4 of 14)	intron (NM_177765, intron 4 of 14)	4037.0	NM_177765	269954.0	Mm.276780	NM_177765	ENSMUSG00000045467	Ttll13	1700111A04Rik|4921538O11|BC024578	tubulin tyrosine ligase-like family, member 13	protein-coding	0.5	0.0	0.0	3.0	4.5	3.5
Merged-chr11-107326359-4	chr11	107325837	107326837	+	779.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	-136956.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-52504781-5	chr12	52504179	52505179	+	779.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-11398.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	8.0	25.5	18.5	5.5	31.0	24.0
Merged-chr11-114260504-2	chr11	114260004	114261004	+	779.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	62246.0	NR_045930	73536.0	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90573586-3	chr2	90573075	90574075	+	779.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	7072.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	10.0	17.5	20.0	5.5	19.0	33.5
Merged-chr10-118178996-2	chr10	118178481	118179481	+	779.666626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-25983.0	NM_016971	50929.0	Mm.103585	NM_016971	ENSMUSG00000074695	Il22	IL-22|IL-22a|ILTIFa|Iltif	interleukin 22	protein-coding	0.5	0.0	0.0	2.5	0.0	2.0
Merged-chr5-122154806-3	chr5	122154295	122155295	+	779.638855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3484.0	NM_013636	19047.0	Mm.280784	NM_013636	ENSMUSG00000004455	Ppp1cc	PP-1G|PP1|dis2m1	protein phosphatase 1, catalytic subunit, gamma isoform	protein-coding	0.0	11.0	12.5	3.0	0.0	2.5
Merged-chr5-124476587-4	chr5	124476072	124477072	+	779.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030259, intron 1 of 3)	intron (NM_030259, intron 1 of 3)	1663.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20073416-2	chr10	20072916	20073916	+	779.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 11 of 29)	intron (NM_008580, intron 11 of 29)	-75504.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10356184-4	chr17	10355659	10356659	+	779.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31557.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71519206-4	chr8	71518731	71519731	+	779.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7462.0	NM_032398	84094.0	Mm.260768	NM_032398	ENSMUSG00000034845	Plvap	MECA32|Pv1	plasmalemma vesicle associated protein	protein-coding	0.0	0.0	4.5	0.0	0.0	5.0
Merged-chr11-119615399-2	chr11	119614924	119615924	+	779.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028898, intron 1 of 33)	intron (NM_028898, intron 1 of 33)	12519.0	NM_028898	74370.0	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	13.0	13.0	7.0	17.0	14.0	9.0
Merged-chr3-89387818-3	chr3	89387321	89388321	+	779.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355206)	promoter-TSS (NM_001355206)	-150.0	NM_001355206	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-55288757-3	chr18	55288262	55289262	+	779.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-296171.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.5	8.5	8.5	0.5	9.0	2.0
Merged-chr9-49050191-3	chr9	49049681	49050681	+	779.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-5400.0	NM_012039	26951.0	Mm.24791	NM_012039	ENSMUSG00000032264	Zw10	6330566F14Rik|MmZw10	zw10 kinetochore protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121033469-3	chr10	121032928	121033928	+	779.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011915)	promoter-TSS (NM_011915)	-576.0	NM_011915	24117.0	Mm.32831	NM_011915	ENSMUSG00000020218	Wif1	AW107799|WIF-1	Wnt inhibitory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56611556-4	chr17	56611075	56612075	+	779.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1804.0	NM_153152	224904.0	Mm.34002	NM_153152	ENSMUSG00000049760	2410015M20Rik	Mic13|QIL1|sr104	RIKEN cDNA 2410015M20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136243915-2	chr5	136243415	136244415	+	779.5476070000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302938, intron 1 of 8)	CpG	1025.0	NM_001302939	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	0.0	0.0	1.5	0.0	1.0	1.0
Merged-chr18-60667029-2	chr18	60666529	60667529	+	779.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045401, exon 2 of 3)	non-coding (NR_045401, exon 2 of 3)	3619.0	NR_045401	328963.0	Mm.417203	NR_045401		G630071F17Rik	G630071F17	RIKEN cDNA G630071F17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-60831710-2	chr17	60831210	60832210	+	779.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17D2|LTR|ERVK	-1818388.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80251757-2	chr10	80251257	80252257	+	779.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029272, intron 1 of 7)	PB1D10|SINE|Alu	2305.0	NM_029272	75406.0	Mm.28712	NM_029272	ENSMUSG00000020153	Ndufs7	1010001M04Rik	NADH dehydrogenase (ubiquinone) Fe-S protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55796422-2	chr14	55795922	55796922	+	779.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7565.0	NM_001164108	56532.0	Mm.46612	NM_019955	ENSMUSG00000022221	Ripk3	2610528K09Rik|AW107945|Rip3	receptor-interacting serine-threonine kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20788977-1	chr10	20788477	20789477	+	779.5	f0_balb.idr	Intergenic	RLTR45|LTR|ERVK	-63899.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103309492-2	chr15	103308992	103309992	+	779.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_030720, exon 2 of 2)	exon (NM_030720, exon 2 of 2)	946.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64174688-4	chr15	64174188	64175188	+	779.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	-114240.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	4.5	0.0	0.0	0.0	0.0	4.5
Merged-chr7-5065770-2	chr7	5065270	5066270	+	779.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205231, intron 1 of 11)	intron (NM_001205231, intron 1 of 11)	3627.0	NM_001205231	22185.0	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-56055444-2	chr14	56054944	56055944	+	779.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6866.0	NM_010779	17227.0	Mm.439684	NM_010779	ENSMUSG00000061068	Mcpt4	MMCP-4|MMCP-4A|MMCP-4B|Mcp-4|Mcp4	mast cell protease 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36505685-2	chr15	36505185	36506185	+	779.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347022, intron 13 of 13)	intron (NM_001347022, intron 13 of 13)	-8894.0	NM_175134	68839.0	Mm.396537	NM_175134	ENSMUSG00000048307	Ankrd46	1110054N06Rik|AI314978|AI987733	ankyrin repeat domain 46	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96486231-2	chr3	96485731	96486731	+	779.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33925.0	NM_001256181	329716.0	Mm.275223	NM_183223	ENSMUSG00000046317	BC107364	D730018G16	cDNA sequence BC107364	protein-coding	7.5	0.0	0.0	3.0	0.0	0.0
Merged-chr3-3001947-2	chr3	3001447	3002447	+	779.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-506083.0	NM_013920	30942.0	Mm.330897	NM_013920	ENSMUSG00000017688	Hnf4g	NR2A2	hepatocyte nuclear factor 4, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83581089-1	chr7	83580589	83581589	+	779.5	f0_c57.idr	Intergenic	Intergenic	-3842.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3706414-4	chr19	3705912	3706912	+	779.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1881.0	NM_001358256	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127283549-2	chr10	127283049	127284049	+	779.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_033072, exon 10 of 13)	exon (NM_033072, exon 10 of 13)	5469.0	NM_001347171	110962.0	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166584341-2	chr2	166583841	166584841	+	779.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 25 of 39)	intron (NM_177782, intron 25 of 39)	19819.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73695891-2	chr12	73695391	73696391	+	779.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 4 of 13)	L3|LINE|CR1	111095.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-181616295-4	chr1	181615805	181616805	+	779.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104854.0	NM_207280	403180.0	Mm.220754	NM_207280	ENSMUSG00000050625	Ccdc121	6530421E24Rik|Gm755	coiled-coil domain containing 121	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28234972-2	chr17	28234472	28235472	+	779.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 1 of 7)	intron (NM_011145, intron 1 of 7)	2218.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86411171-2	chr1	86410671	86411671	+	779.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15158.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-65068725-2	chr1	65068225	65069225	+	779.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4807.0	NM_007775	12966.0	Mm.491115	NM_007775	ENSMUSG00000025952	Crygc	Cryg-5	crystallin, gamma C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113642364-2	chr6	113641864	113642864	+	779.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 1 of 11)	B1_Mus1|SINE|Alu	3897.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30636067-2	chr7	30635567	30636567	+	779.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007959)	promoter-TSS (NM_007959)	-215.0	NM_007959	14008.0	Mm.4829	NM_007959	ENSMUSG00000006311	Etv2	Etsrp71	ets variant 2	protein-coding	0.0	8.0	0.0	3.0	0.0	1.0
Merged-chr7-128203571-2	chr7	128203071	128204071	+	779.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045183)	promoter-TSS (NR_045183)	-243.0	NR_045183	70973.0	Mm.441564	NR_045183	ENSMUSG00000108354	4931431B13Rik	1700108I23Rik|AA536668	RIKEN cDNA 4931431B13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102254462-2	chr7	102253968	102254968	+	779.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4350.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	0.0	0.0	1.0	10.0	0.0	0.0
Merged-chr12-85110035-2	chr12	85109535	85110535	+	779.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030225)	promoter-TSS (NM_030225)	-798.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30666074-2	chr5	30665574	30666574	+	779.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302130)	promoter-TSS (NM_001302130)	-812.0	NM_007681	12615.0	Mm.290563	NM_007681	ENSMUSG00000029177	Cenpa	Cenp-A	centromere protein A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80047633-2	chr18	80047093	80048093	+	779.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053117, intron 1 of 2)	CpG	698.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	1.5	6.0	1.0	0.0	3.5	0.0
Merged-chr10-94427707-2	chr10	94427207	94428207	+	779.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	-87150.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66298642-2	chr5	66298142	66299142	+	779.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027602)	TTS (NM_027602)	37801.0	NM_027602	70918.0	Mm.23166	NM_027602	ENSMUSG00000029206	Nsun7	4921525L17Rik	NOL1/NOP2/Sun domain family, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155817166-2	chr2	155816672	155817672	+	779.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_015528)	TTS (NR_015528)	2031.0	NR_015528	613262.0	Mm.330707	NR_015528	ENSMUSG00000074649	BC029722	-	cDNA sequence BC029722	ncRNA	0.0	3.5	9.0	3.0	0.0	10.5
Merged-chr2-160192897-2	chr2	160192397	160193397	+	779.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134597.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44281926-2	chr19	44281426	44282426	+	779.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-11750.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	0.0	0.0	0.0	1.0	2.0	1.0
Merged-chr2-120159585-2	chr2	120159069	120160069	+	779.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-4994.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	5.0	9.5	3.5	5.0	13.5	4.0
Merged-chr10-127067863-2	chr10	127067363	127068363	+	779.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009870)	TTS (NM_009870)	2398.0	NM_025982	67125.0	Mm.35650	NM_025982	ENSMUSG00000006736	Tspan31	2700085A14Rik|AW742554|Sas	tetraspanin 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78802413-1	chr15	78801913	78802913	+	779.5	f1_balb.idr	exon (NM_130859, exon 2 of 21)	exon (NM_130859, exon 2 of 21)	629.0	NM_130859	105844.0	Mm.17629	NM_130859	ENSMUSG00000033170	Card10	AI449026|Bimp1|Carma3	caspase recruitment domain family, member 10	protein-coding	0.0	6.0	1.0	0.0	0.0	0.0
Merged-chr6-146281687-2	chr6	146281187	146282187	+	779.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 37 of 56)	ORR1E|LTR|ERVL-MaLR	220536.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148512437-2	chr5	148511937	148512937	+	779.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 3 of 6)	B4A|SINE|B4	39236.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	2.5	4.0	2.5	2.5	0.0	0.0
Merged-chr12-14137285-2	chr12	14136785	14137785	+	779.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14753.0	NM_029007	105005.0	Mm.227253	NM_029007	ENSMUSG00000020607	Fam84a	2310003N02Rik|4731402F03Rik|AW125753|Nse1	family with sequence similarity 84, member A	protein-coding	0.0	4.5	2.0	0.0	2.5	2.0
Merged-chr8-117483331-2	chr8	117482831	117483831	+	779.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14944.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33257105-2	chr2	33256605	33257605	+	779.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290570, intron 7 of 16)	intron (NM_001290570, intron 7 of 16)	41144.0	NM_011923	26360.0	Mm.208919	NM_011923	ENSMUSG00000004105	Angptl2	AI593246|AW260363|Arp2	angiopoietin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31478443-2	chr14	31477943	31478943	+	779.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001359850)	TTS (NM_001359850)	16315.0	NM_001359850	67011.0	Mm.291731	NM_025907	ENSMUSG00000021891	Mettl6	1600013P15Rik|AI467521|AU020711	methyltransferase like 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-3023235-2	chr9	3022734	3023734	+	779.5	f0_c57.idr|f1_balb.idr	Intergenic	GSAT_MM|Satellite|Satellite	15509.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26570036-2	chr17	26569529	26570529	+	779.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	8517.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	7.5	11.5	25.5	8.0	22.5	1.5
Merged-chr2-85007900-4	chr2	85007384	85008384	+	779.479187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145526, intron 8 of 11)	B2_Mm2|SINE|B2	19669.0	NM_016914	53856.0	Mm.19943	NM_016914	ENSMUSG00000027072	Prg3	MBP2|MBPH	proteoglycan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120197763-4	chr10	120197265	120198265	+	779.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359184, intron 1 of 11)	intron (NM_001359184, intron 1 of 11)	3832.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	1.5	8.5	1.0	0.0	0.5	2.5
Merged-chr13-100453860-3	chr13	100453347	100454347	+	779.466675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008670)	promoter-TSS (NM_008670)	-983.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46484737-3	chr17	46484215	46485215	+	779.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162864, intron 1 of 14)	intron (NM_001162864, intron 1 of 14)	2960.0	NM_001162864	106763.0	Mm.297613	NM_175351	ENSMUSG00000015599	Ttbk1	AU017937|AW048023|C330008L01Rik	tau tubulin kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-108153149-3	chr13	108152652	108153652	+	779.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360140, intron 1 of 4)	intron (NM_001360140, intron 1 of 4)	5473.0	NM_001360140	75597.0	Mm.276040	NM_001127346	ENSMUSG00000068184	Ndufaf2	1810058I14Rik|C86051|Ndufa12l|mimitin	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2	protein-coding	2.0	4.0	0.0	3.5	1.5	0.5
Merged-chr16-91463624-3	chr16	91463127	91464127	+	779.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-1477.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	46.0	109.5	67.0	41.0	103.0	50.5
Merged-chr17-28308944-4	chr17	28308448	28309448	+	779.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4582.0	NR_028297	72775.0	Mm.201859	NM_028348	ENSMUSG00000007570	Fance	2810451D06Rik|AI415634|AW209126	Fanconi anemia, complementation group E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-99311033-2	chr11	99310556	99311556	+	779.416687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	11885.0	NM_133730	70810.0	Mm.268173	NM_133730	ENSMUSG00000035831	Krt25	4631426H08Rik|Ka38|Krt25a|mIRSa1	keratin 25	protein-coding	4.5	15.0	0.0	3.5	3.5	0.0
Merged-chr9-45608269-3	chr9	45607768	45608768	+	779.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-177036.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-32328243-3	chr6	32327647	32328647	+	779.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-182994.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0.5	3.0	1.0	3.0	0.0	2.0
Merged-chr8-126548643-2	chr8	126548118	126549118	+	779.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	44818.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	7.5	21.0	20.0	12.0	25.5	7.5
Merged-chr19-7017255-2	chr19	7016755	7017755	+	779.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362399, intron 2 of 14)	L2|LINE|L2	2214.0	NM_153795	108101.0	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24653816-3	chr7	24653309	24654309	+	779.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7485.0	NR_030681	100043706.0	Mm.483825	NR_030681	ENSMUSG00000108470	Gm4598	-	predicted gene 4598	ncRNA	0.0	1.5	0.0	0.0	1.5	0.0
Merged-chr19-60941986-3	chr19	60941498	60942498	+	779.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	52249.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	4.5	5.0	8.5	2.0	4.0	6.0
Merged-chr7-99865401-4	chr7	99864904	99865904	+	779.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164258, intron 2 of 18)	intron (NM_001164258, intron 2 of 18)	6186.0	NM_001164258	446101.0	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184561498-3	chr1	184560991	184561991	+	779.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3800.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr13-52577337-3	chr13	52576841	52577841	+	779.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4116.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43550207-4	chr17	43549696	43550696	+	779.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-6557.0	NM_001254953	100043332.0	Mm.17626	NM_001254953	ENSMUSG00000096140	Ankrd66	AU041848|D730048J04Rik|Gm4368	ankyrin repeat domain 66	protein-coding	0.5	5.0	0.0	3.0	0.0	0.0
Merged-chr7-80504896-3	chr7	80504394	80505394	+	779.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042527, intron 5 of 21)	L3|LINE|CR1	30104.0	NM_007550	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	0.0	2.0	4.5	0.0	6.0	5.0
Merged-chr1-92906138-4	chr1	92905626	92906626	+	779.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175118)	promoter-TSS (NM_175118)	-863.0	NM_175118	67446.0	Mm.46179	NM_175118	ENSMUSG00000047067	Dusp28	0710001B24Rik|AV005521	dual specificity phosphatase 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31932278-2	chr16	31931778	31932778	+	779.299988	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER54A|LTR|ERVL	-1573.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121508470-2	chr10	121507970	121508970	+	779.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-32220.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0.0	0.5	1.5	2.0	7.5	2.5
Merged-chr10-42682233-2	chr10	42681733	42682733	+	779.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172416, intron 1 of 5)	intron (NM_172416, intron 1 of 5)	3317.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154547108-2	chr2	154546609	154547609	+	779.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_021546, exon 7 of 13)	exon (NM_021546, exon 7 of 13)	-1795.0	NM_029305	75480.0	Mm.440434	NM_029305	ENSMUSG00000038523	1700003F12Rik	-	RIKEN cDNA 1700003F12 gene	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr7-100509494-2	chr7	100508994	100509994	+	779.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_153527, intron 3 of 7)	B1_Mus1|SINE|Alu	5321.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	29.5	71.0	43.5	12.5	42.0	28.5
Merged-chr7-80339373-2	chr7	80338750	80339750	+	779.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_133952, intron 3 of 19)	intron (NM_133952, intron 3 of 19)	969.0	NM_133952	101869.0	Mm.243024	NM_133952	ENSMUSG00000030533	Unc45a	AW538196	unc-45 myosin chaperone A	protein-coding	2.0	2.0	2.5	2.5	1.0	2.5
Merged-chr3-88533550-2	chr3	88533050	88534050	+	779.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029890, intron 1 of 1)	intron (NM_001029890, intron 1 of 1)	1155.0	NM_001029890	72640.0	Mm.275154	NM_001029890	ENSMUSG00000074480	Mex3a	2700083E18Rik|Gm411|Rkhd4	mex3 RNA binding family member A	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr6-71142730-2	chr6	71142230	71143230	+	779.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_178413, intron 1 of 9)	ID4_|SINE|ID	1650.0	NM_001033929	232078.0	Mm.37547	NM_178413	ENSMUSG00000054474	Thnsl2	BC051244|TSH2	threonine synthase-like 2 (bacterial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120587431-3	chr10	120586949	120587949	+	779.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110980.0	NM_010441	15364.0	Mm.157190	NM_010441	ENSMUSG00000056758	Hmga2	9430083A20Rik|HMGI-C|Hmgic|pg|pygmy	high mobility group AT-hook 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44419143-3	chr19	44418660	44419660	+	779.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11451.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	1.5	0.0	12.0	0.5	0.0	1.0
Merged-chr6-129544393-3	chr6	129543888	129544888	+	779.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11104.0	NR_045270	100504641.0	Mm.398286	NR_045270	ENSMUSG00000097675	1700101I11Rik	-	RIKEN cDNA 1700101I11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr6-127155079-4	chr6	127154581	127155581	+	779.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040275, intron 1 of 1)	CpG	-4033.0	NM_009829	12444.0	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130838115-4	chr4	130837617	130838617	+	779.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45580.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70208279-3	chr9	70207790	70208790	+	779.1777950000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	940.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150316751-3	chr4	150316246	150317246	+	779.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 1 of 22)	MIRb|SINE|MIR	34830.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr15-99669272-3	chr15	99668771	99669771	+	779.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1106.0	NM_009597	11419.0	Mm.440107	NM_009597	ENSMUSG00000023017	Asic1	AI843610|ASIC|ASIC1a|Accn2|B530003N02Rik|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding	0.5	3.0	1.5	0.5	0.0	1.0
Merged-chr13-5801134-3	chr13	5800719	5801719	+	779.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56873.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67315275-4	chr10	67314766	67315766	+	779.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29985.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73497088-2	chr2	73496588	73497588	+	779.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-11335.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61413918-2	chr11	61413418	61414418	+	779.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35843.0	NM_026183	67473.0	Mm.100741	NM_026183	ENSMUSG00000010122	Slc47a1	1300013J15Rik|AI036982|MATE1|mMATE1	solute carrier family 47, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55767792-4	chr19	55767287	55768287	+	779.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	(TC)n|Simple_repeat|Simple_repeat	25977.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79323336-4	chr8	79322826	79323826	+	779.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28248.0	NR_045823	234479.0	Mm.238026	NR_045822		Gm4890	A630049P17	predicted gene 4890	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97362443-2	chr15	97361943	97362943	+	779.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 4 of 5)	intron (NM_172293, intron 4 of 5)	-115156.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111925664-4	chr10	111925155	111926155	+	779.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47040.0	NM_178610	52705.0	Mm.34606	NM_178610	ENSMUSG00000063334	Krr1	2610511F02Rik|AI255219|AI428520|D10Ertd773e|Hrb2	KRR1, small subunit (SSU) processome component, homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180272004-2	chr2	180271504	180272504	+	779.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145851, intron 1 of 9)	intron (NM_145851, intron 1 of 9)	1461.0	NM_145851	252966.0	Mm.386884	NM_145851	ENSMUSG00000038990	Cables2	ik3-2	CDK5 and Abl enzyme substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173760785-2	chr2	173760285	173761285	+	779.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019806, intron 1 of 5)	intron (NM_019806, intron 1 of 5)	23214.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85077171-4	chr8	85076577	85077577	+	779.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026399, intron 5 of 8)	intron (NM_026399, intron 5 of 8)	3669.0	NM_026399	67836.0	Mm.334680	NM_026399	ENSMUSG00000005150	Wdr83	1500041N16Rik|Morg1	WD repeat domain containing 83	protein-coding	1.0	35.0	11.5	12.5	24.0	10.5
Merged-chr5-25007046-3	chr5	25006559	25007559	+	779.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 3 of 15)	intron (NM_145401, intron 3 of 15)	-11306.0	NM_001310480	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59333628-4	chr10	59333123	59334123	+	779.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316370, intron 1 of 13)	RSINE1|SINE|B4	10327.0	NM_001316370	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70435548-2	chr11	70435048	70436048	+	779.0500490000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_001271360, exon 2 of 16)	exon (NM_001271360, exon 2 of 16)	-2707.0	NR_106064	102465670.0		NR_106064	ENSMUSG00000099109	Mir7115	Gm27902|mmu-mir-7115	microRNA 7115	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34474867-4	chr19	34474471	34475471	+	779.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009890, exon 1 of 1)	exon (NM_009890, exon 1 of 1)	164.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-68860623-3	chr2	68860140	68861140	+	779.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172856)	promoter-TSS (NM_172856)	-801.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126605577-1	chr8	126605077	126606077	+	779.0	f1_balb.idr	Intergenic	Intergenic	-12141.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	1.5	0.0	0.0	0.0	0.0	0.0
Merged-chr6-77364596-2	chr6	77364096	77365096	+	779.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145732, intron 8 of 18)	intron (NM_145732, intron 8 of 18)	17879.0	NR_045141	70753.0	Mm.490700	NR_045141	ENSMUSG00000108077	6330415B21Rik	-	RIKEN cDNA 6330415B21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107611319-1	chr9	107610819	107611819	+	779.0	f1_c57bl6.idr	Intergenic	Intergenic	-2078.0	NM_001291539	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	17.5	34.5	19.0	16.0	70.5	51.0
Merged-chr18-23604075-1	chr18	23603575	23604575	+	779.0	f0_balb.idr	3' UTR (NM_010087, exon 12 of 12)	3' UTR (NM_010087, exon 12 of 12)	106593.0	NM_001285810	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	0.0	4.0	2.5	3.0	0.5	1.5
Merged-chr14-62354121-3	chr14	62353617	62354617	+	779.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026001, intron 5 of 10)	L1M2|LINE|L1	22049.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	0.0	7.0	3.0	0.0	1.5	0.0
Merged-chr12-100081808-2	chr12	100081308	100082308	+	779.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-30523.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-114312046-1	chr10	114311546	114312546	+	779.0	f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	489324.0	NM_146241	237553.0	Mm.445550	NM_146241	ENSMUSG00000050663	Trhde	9330155P21Rik	TRH-degrading enzyme	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99384393-2	chr15	99383893	99384893	+	779.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8554.0	NM_026669	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50943341-1	chr14	50942841	50943841	+	779.0	f1_c57bl6.idr	promoter-TSS (NM_013632)	promoter-TSS (NM_013632)	-962.0	NM_013632	18950.0	Mm.17932	NM_013632	ENSMUSG00000115338	Pnp	AL024301|AU015798|Np|Np-1|Np-2|Pnp1	purine-nucleoside phosphorylase	protein-coding	12.5	66.5	33.5	24.5	37.5	33.0
Merged-chr18-80709096-2	chr18	80708596	80709596	+	779.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164112)	promoter-TSS (NM_001164112)	-923.0	NM_001164112	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-119895758-2	chr14	119895258	119896258	+	779.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146531.0	NR_045621	75432.0	Mm.443277	NR_045621	ENSMUSG00000100274	1700006F04Rik	-	RIKEN cDNA 1700006F04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-113911366-1	chr2	113910866	113911866	+	779.0	f0_balb.idr	Intergenic	Intergenic	-62705.0	NM_181416	228482.0	Mm.45753	NM_181416	ENSMUSG00000041219	Arhgap11a	6530401L14Rik|mKIAA0013	Rho GTPase activating protein 11A	protein-coding	11.0	5.5	0.5	4.0	2.5	3.0
Merged-chr11-96319073-2	chr11	96318573	96319573	+	779.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010459, exon 1 of 2)	exon (NM_010459, exon 1 of 2)	806.0	NM_010459	15412.0	Mm.3546	NM_010459	ENSMUSG00000038692	Hoxb4	Hox-2.6	homeobox B4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-76857681-2	chr5	76857181	76858181	+	779.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163793, exon 6 of 9)	exon (NM_001163793, exon 6 of 9)	17082.0	NM_001163793	320827.0	Mm.101504	NM_001163793	ENSMUSG00000036377	C530008M17Rik	2810489J07Rik|4930529A19Rik|4931405B09Rik|Kiaa1211|mKIAA1211	RIKEN cDNA C530008M17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-74820556-1	chr5	74820056	74821056	+	779.0	f0_balb.idr	Intergenic	Intergenic	-117653.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	8.0	4.5	1.0	0.0	1.5	1.5
Merged-chr16-22293600-2	chr16	22293100	22294100	+	779.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	-1388.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31072156-2	chr17	31071646	31072646	+	779.0	f0_balb.idr|f1_balb.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	14452.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	1.0	18.0	19.5	16.0	17.5	29.0
Merged-chr12-84771307-2	chr12	84770807	84771807	+	779.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 1 of 3)	B4|SINE|B4	1805.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52236456-2	chr6	52235956	52236956	+	779.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122950, intron 1 of 1)	intron (NM_001122950, intron 1 of 1)	-1517.0	NM_008263	15395.0	Mm.5	NM_008263	ENSMUSG00000000938	Hoxa10	Hox-1.8|Hoxa-10	homeobox A10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10665614-2	chr19	10665114	10666114	+	779.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153778, exon 20 of 20)	non-coding (NR_153778, exon 20 of 20)	12457.0	NM_021453	58803.0	Mm.34037	NM_021453	ENSMUSG00000024738	Pga5	1110035E17Rik|Pepf	pepsinogen 5, group I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-96949350-1	chr5	96948850	96949850	+	779.0	f0_balb.idr	Intergenic	URR1A|DNA|hAT-Charlie	28078.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	13.5	14.0	19.0	4.0	13.5	19.0
Merged-chr1-152688192-3	chr1	152687700	152688700	+	779.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	-62351.0	NM_001081197	71281.0	Mm.158650	NM_001081197	ENSMUSG00000055547	Apobec4	4933431M11Rik	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141214750-2	chr4	141214250	141215250	+	779.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081174, intron 2 of 5)	intron (NM_001081174, intron 2 of 5)	794.0	NM_001081174	76166.0	Mm.271064	NM_001081174	ENSMUSG00000073733	Rsg1	6330545A04Rik|Gm723|b2b2804Clo|b2b2827Clo	REM2 and RAB-like small GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31022574-2	chr2	31022074	31023074	+	779.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028846)	TTS (NM_028846)	40295.0	NM_028846	74270.0	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111151210-1	chr12	111150710	111151710	+	779.0	f1_balb.idr	Intergenic	Intergenic	-15160.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-46820950-1	chr14	46820450	46821450	+	779.0	f1_c57bl6.idr	intron (NM_022023, intron 1 of 6)	(TC)n|Simple_repeat|Simple_repeat	1292.0	NM_022023	63985.0	Mm.87312	NM_022023	ENSMUSG00000062014	Gmfb	3110001H22Rik|3110001O16Rik|AI851627|C79176|D14Ertd630e	glia maturation factor, beta	protein-coding	31.0	46.5	51.5	38.5	69.5	48.0
Merged-chr8-6117996-2	chr8	6117502	6118502	+	779.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-1012715.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	2.0	8.0	5.5	0.0	4.0	1.0
Merged-chr13-100852079-2	chr13	100851579	100852579	+	779.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-18652.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102285082-2	chr15	102284582	102285582	+	779.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5626.0	NM_134100	106073.0	Mm.287740	NM_134100	ENSMUSG00000045665	Mfsd5	AA409375|AW556797|D15Mgi27	major facilitator superfamily domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62601527-2	chr10	62601027	62602027	+	779.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019553, intron 1 of 14)	intron (NM_019553, intron 1 of 14)	771.0	NM_019553	56200.0	Mm.413275	NM_019553	ENSMUSG00000020075	Ddx21	AI255159|AL022742|D10Ertd645e|D10Wsu42e	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114968191-1	chr11	114967691	114968691	+	779.0	f1_c57bl6.idr	Intergenic	Intergenic	-7774.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	167.0	298.0	285.5	141.0	371.5	213.0
Merged-chr5-115281367-1	chr5	115280867	115281867	+	779.0	f1_c57bl6.idr	intron (NM_026504, intron 1 of 6)	URR1B|DNA|hAT-Charlie	1665.0	NM_026504	52064.0	Mm.290142	NM_026504	ENSMUSG00000041733	Coq5	1810014G04Rik|D5Ertd33e	coenzyme Q5 methyltransferase	protein-coding	21.5	16.5	17.0	1.0	16.5	20.5
Merged-chr17-43571964-2	chr17	43571464	43572464	+	779.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	3513.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	13.0	17.0	11.5	11.0	39.0	13.0
Merged-chr8-51107773-2	chr8	51107273	51108273	+	779.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A1|LTR|ERVK	739661.0	NR_046067	100039954.0	Mm.400419	NR_046067	ENSMUSG00000110281	Gm2516	-	predicted gene 2516	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65877178-1	chr17	65876678	65877678	+	779.0	f1_c57bl6.idr	intron (NM_009067, intron 1 of 9)	intron (NM_009067, intron 1 of 9)	7745.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr18-56752007-2	chr18	56751507	56752507	+	779.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010721, intron 10 of 10)	intron (NM_010721, intron 10 of 10)	44194.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89319620-2	chr6	89319120	89320120	+	779.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008881, intron 31 of 31)	intron (NM_008881, intron 31 of 31)	-33895.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59541706-1	chr2	59541206	59542206	+	779.0	f0_balb.idr	Intergenic	Intergenic	57053.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-33232225-1	chr14	33231725	33232725	+	779.0	f0_balb.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	15402.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86154151-1	chr15	86153651	86154651	+	779.0	f1_balb.idr	intron (NM_145475, intron 6 of 12)	MTEb|LTR|ERVL-MaLR	-31577.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	1.0	9.0	5.0	3.0	0.0	1.0
Merged-chr13-107828808-2	chr13	107828327	107829327	+	779.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	MT2A|LTR|ERVL	61237.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	17.0	4.5	10.5	6.0	7.5	2.5
Merged-chr8-10831482-3	chr8	10830989	10831989	+	778.977783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	50965.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76674122-4	chr14	76673627	76674627	+	778.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3441.0	NR_015485	73272.0	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA	5.5	9.0	10.5	1.0	2.0	13.0
Merged-chr1-9573409-3	chr1	9572902	9573902	+	778.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357376, intron 12 of 12)	intron (NM_001357376, intron 12 of 12)	25454.0	NM_001357376	76187.0	Mm.28514	NM_175236	ENSMUSG00000025911	Adhfe1	6330565B14Rik|AI043035|Adh8|HOT	alcohol dehydrogenase, iron containing, 1	protein-coding	3.5	0.0	0.0	0.0	0.0	0.0
Merged-chr16-75906990-2	chr16	75906490	75907490	+	778.93335	f1_balb.idr|f1_c57bl6.idr	intron (NM_023380, intron 1 of 7)	intron (NM_023380, intron 1 of 7)	2276.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-63855504-4	chr7	63855020	63856020	+	778.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61337.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56337425-4	chr17	56336920	56337920	+	778.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172132, intron 1 of 22)	intron (NM_172132, intron 1 of 22)	11370.0	NM_001357909	193796.0	Mm.45047	NM_172132	ENSMUSG00000024201	Kdm4b	4732474L06Rik|Jmjd2b	lysine (K)-specific demethylase 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78372811-4	chr17	78372310	78373310	+	778.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 16 of 16)	intron (NM_015800, intron 16 of 16)	45342.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116345365-3	chr6	116344867	116345867	+	778.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302385, intron 2 of 6)	intron (NM_001302385, intron 2 of 6)	7345.0	NM_001302383	71779.0	Mm.27064	NM_027920	ENSMUSG00000025702	March8	1300017E09Rik|MARCH-VIII|Mir	membrane-associated ring finger (C3HC4) 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53800226-3	chr19	53799719	53800719	+	778.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170847, intron 1 of 13)	intron (NM_001170847, intron 1 of 13)	-92012.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56005888-4	chr17	56005390	56006390	+	778.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102313)	promoter-TSS (NR_102313)	-284.0	NR_102313	106766.0	Mm.204991	NM_145934	ENSMUSG00000038781	Stap2	AW049765|STAP-2	signal transducing adaptor family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75709450-4	chr7	75708953	75709953	+	778.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 17 of 36)	intron (NM_029332, intron 17 of 36)	-138885.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135987498-2	chr5	135986998	135987998	+	778.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_011776, exon 7 of 8)	exon (NM_011776, exon 7 of 8)	-7302.0	NM_023742	74198.0	Mm.275574	NM_023742	ENSMUSG00000004947	Dtx2	2610524D08Rik|AA408415|AU022494|Deltex2	deltex 2, E3 ubiquitin ligase	protein-coding	6.5	5.0	2.5	0.0	3.0	0.5
Merged-chr2-31773427-2	chr2	31772927	31773927	+	778.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001283045, intron 1 of 10)	MTB_Mm-int|LTR|ERVL-MaLR	13254.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14228118-2	chr2	14227618	14228618	+	778.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-1296.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25257606-2	chr2	25257106	25258106	+	778.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	2167.0	NM_177344	227615.0	Mm.213925	NM_177344	ENSMUSG00000078201	Tmem203	C730025P13Rik|Hbebp1	transmembrane protein 203	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35295981-2	chr17	35295481	35296481	+	778.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24566.0	NM_010390	15006.0	Mm.466882	NM_010390	ENSMUSG00000079507	H2-Q1	H-2Q1|Q1|Q1b|Q1d|Q1k|Qa-1|Qa1|Qed-1	histocompatibility 2, Q region locus 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90218206-2	chr16	90217706	90218706	+	778.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2536.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-38352926-3	chr19	38352436	38353436	+	778.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43044.0	NM_175507	240660.0	Mm.262085	NM_175507	ENSMUSG00000044026	Slc35g1	AA590464|D330039I19Rik|Tmem20	solute carrier family 35, member G1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105345181-3	chr5	105344662	105345662	+	778.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132129, intron 1 of 10)	intron (NR_132129, intron 1 of 10)	1310.0	NM_001039647	634650.0	Mm.458435	NM_001039647	ENSMUSG00000092021	Gbp11	EG634650|Gm7141	guanylate binding protein 11	protein-coding	0.0	0.0	0.0	3.0	0.0	1.0
Merged-chr6-51557429-3	chr6	51556920	51557920	+	778.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361577, intron 1 of 6)	ORR1A3|LTR|ERVL-MaLR	12127.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108721816-3	chr6	108721319	108722319	+	778.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60885.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0.0	1.0	13.5	1.0	19.0	24.0
Merged-chr2-50981305-3	chr2	50980745	50981745	+	778.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	71561.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-6488389-4	chr18	6487872	6488872	+	778.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001276350)	TTS (NM_001276350)	2274.0	NR_035446	100316773.0		NR_035446	ENSMUSG00000084514	Mir1893	Mirn1893|mmu-mir-1893	microRNA 1893	ncRNA	2.5	8.0	3.0	2.5	8.0	3.0
Merged-chr17-14960979-5	chr17	14960485	14961485	+	778.780029	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024250, intron 1 of 11)	CpG	275.0	NM_001360983	72057.0	Mm.440085	NM_024250	ENSMUSG00000023883	Phf10	1810055P05Rik|AV024533	PHD finger protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-82881566-3	chr7	82881075	82882075	+	778.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14242.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	6.0	11.0	2.0	0.0	0.0	2.0
Merged-chr8-115564687-3	chr8	115564159	115565159	+	778.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	142235.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-148981981-3	chr3	148981490	148982490	+	778.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27355.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59787303-3	chr15	59786787	59787787	+	778.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7672.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	2.0	0.0	0.5	0.0	3.5	3.5
Merged-chr11-69903211-2	chr11	69902711	69903711	+	778.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001291119, exon 2 of 28)	exon (NM_001291119, exon 2 of 28)	1395.0	NM_001013414	216860.0	Mm.268347	NM_001013414	ENSMUSG00000047284	Neurl4	-	neuralized E3 ubiquitin protein ligase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134624755-2	chr4	134624255	134625255	+	778.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 2 of 11)	intron (NM_207237, intron 2 of 11)	-56904.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68089748-2	chr10	68089248	68090248	+	778.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110178.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	11.0	1.0	0.5	5.5	9.0	2.5
Merged-chr11-97314310-2	chr11	97313811	97314811	+	778.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1405.0	NM_025927	67036.0	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	0.0	3.0	1.0	0.0	0.0	0.0
Merged-chr2-170344901-2	chr2	170344401	170345401	+	778.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11460.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77905399-4	chr15	77904860	77905860	+	778.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23634.0	NM_019913	56551.0	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106643473-4	chr1	106642968	106643968	+	778.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	70822.0	NM_009741	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39637078-2	chr18	39636578	39637578	+	778.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-136419.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-5020270-4	chr1	5019814	5020814	+	778.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021374)	promoter-TSS (NM_021374)	-775.0	NM_021374	58175.0	Mm.103771	NM_021374	ENSMUSG00000002459	Rgs20	2900073E09Rik|Rgsz1	regulator of G-protein signaling 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55099014-6	chr11	55098512	55099512	+	778.733337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010299, intron 1 of 3)	B1_Mm|SINE|Alu	1027.0	NM_010299	14667.0	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158115993-3	chr2	158115431	158116431	+	778.733337	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009373)	TTS (NM_009373)	-24134.0	NR_040609	72340.0	Mm.443395	NR_040609	ENSMUSG00000100860	2010009K17Rik	-	RIKEN cDNA 2010009K17 gene	ncRNA	1.5	6.5	12.5	2.0	6.5	10.0
Merged-chr16-24575897-3	chr16	24575398	24576398	+	778.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 4 of 12)	intron (NM_178665, intron 4 of 12)	46584.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16096436-2	chr7	16095936	16096936	+	778.700012	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347559)	TTS (NM_001347559)	-2144.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr18-13302953-2	chr18	13302454	13303454	+	778.674988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	295964.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	5.0	16.0	8.5	5.5	4.5	4.0
Merged-chr10-53471453-3	chr10	53470960	53471960	+	778.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS4|LTR|ERV1	47529.0	NR_037973	100502868.0	Mm.297722	NR_037973	ENSMUSG00000112739	Gm20597	B230314j19	predicted gene, 20597	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53328240-3	chr15	53327750	53328750	+	778.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	17933.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-53993511-3	chr6	53993014	53994014	+	778.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110484, intron 1 of 3)	intron (NR_110484, intron 1 of 3)	14823.0	NR_110484	320178.0	Mm.320413	NR_110484	ENSMUSG00000108060	4921529L05Rik	4930590G02Rik	RIKEN cDNA 4921529L05 gene	ncRNA	0.0	6.0	0.0	0.0	7.0	0.0
Merged-chr13-12649048-2	chr13	12648548	12649548	+	778.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_003568, intron 1 of 6)	intron (NR_003568, intron 1 of 6)	1347.0	NR_003568	664862.0	Mm.415635	NR_003568		Gpr137b-ps	2310041G17Rik	G protein-coupled receptor 137B, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90582929-2	chr2	90582429	90583429	+	778.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2282.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96376730-4	chr10	96376226	96377226	+	778.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150519.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60374329-5	chr10	60373843	60374843	+	778.664978	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 37 of 68)	intron (NM_001252635, intron 37 of 68)	-25383.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr15-98663795-2	chr15	98663295	98664295	+	778.625	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080981)	promoter-TSS (NM_001080981)	-906.0	NM_001080981	74351.0	Mm.45725	NM_001080981	ENSMUSG00000003360	Ddx23	3110082M05Rik|4921506D17Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135351896-3	chr4	135351433	135352433	+	778.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016799, intron 1 of 17)	ID4|SINE|ID	1281.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74897834-3	chr15	74897324	74898324	+	778.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16120.0	NM_025929	67038.0	Mm.154566	NM_025929	ENSMUSG00000063522	2010109I03Rik	Ly6m	RIKEN cDNA 2010109I03 gene	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr17-34377749-5	chr17	34377315	34378315	+	778.606689	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111094, intron 1 of 9)	intron (NM_001111094, intron 1 of 9)	683.0	NM_001111094	100038862.0	Mm.440426	NM_201405	ENSMUSG00000062638	Btnl1	Btnl3|Gm316|Gm33	butyrophilin-like 1	protein-coding	1.5	23.5	14.5	2.5	5.0	4.0
Merged-chr15-96684466-5	chr15	96683937	96684937	+	778.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15291.0	NM_001355633	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11324252-4	chr19	11323768	11324768	+	778.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027836, intron 5 of 6)	intron (NM_027836, intron 5 of 6)	10427.0	NM_001276398	109225.0	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	0.0	2.0	2.5	3.5	0.0	0.5
Merged-chr9-15015828-4	chr9	15015381	15016381	+	778.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019482, intron 2 of 4)	intron (NM_019482, intron 2 of 4)	29597.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42744344-3	chr19	42743817	42744817	+	778.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029011, intron 4 of 15)	intron (NM_029011, intron 4 of 15)	8458.0	NM_029011	74580.0	Mm.329858	NM_029011	ENSMUSG00000060224	Pyroxd2	3830409H07Rik|4833409A17Rik	pyridine nucleotide-disulphide oxidoreductase domain 2	protein-coding	4.0	1.0	2.5	1.0	0.0	0.0
Merged-chr18-24112691-3	chr18	24112191	24113191	+	778.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172625, exon 3 of 5)	exon (NM_172625, exon 3 of 5)	9128.0	NM_172625	225280.0	Mm.258973	NM_172625	ENSMUSG00000047989	Ino80c	D030070L09Rik	INO80 complex subunit C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54637294-3	chr14	54636781	54637781	+	778.555542	f1_balb.idr|f1_c57bl6.idr	intron (NM_199470, intron 7 of 11)	intron (NM_199470, intron 7 of 11)	4083.0	NM_199470	239096.0	Mm.386871	NM_199470	ENSMUSG00000059674	Cdh24	1700040A22Rik	cadherin-like 24	protein-coding	0.0	0.5	3.0	0.0	0.5	1.0
Merged-chr5-103802699-3	chr5	103802196	103803196	+	778.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133919, intron 3 of 19)	intron (NM_133919, intron 3 of 19)	48123.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-55787761-3	chr3	55787332	55788332	+	778.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030595, intron 40 of 57)	intron (NM_030595, intron 40 of 57)	5322.0	NM_010750	17116.0	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-94539537-3	chr15	94539057	94540057	+	778.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172437, intron 2 of 8)	intron (NM_172437, intron 2 of 8)	3950.0	NM_172437	78895.0	Mm.34344	NM_172437	ENSMUSG00000033356	Pus7l	3000003F02Rik	pseudouridylate synthase 7-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20526185-2	chr10	20525685	20526685	+	778.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 2 of 12)	intron (NM_013875, intron 2 of 12)	22143.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84166785-2	chr15	84166285	84167285	+	778.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1031.0	NM_054088	116939.0	Mm.390817	NM_054088	ENSMUSG00000041653	Pnpla3	Adpn	patatin-like phospholipase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-74970607-2	chr7	74970107	74971107	+	778.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59604.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-127609644-2	chr5	127609190	127610190	+	778.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133895, intron 1 of 7)	PB1D10|SINE|Alu	7702.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	5.5	22.5	12.0	12.0	25.0	15.5
Merged-chr7-141402576-2	chr7	141402076	141403076	+	778.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011528, intron 7 of 7)	(CA)n|Simple_repeat|Simple_repeat	10416.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79933398-2	chr10	79932898	79933898	+	778.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001288625, intron 3 of 8)	intron (NM_001288625, intron 3 of 8)	6057.0	NM_001288625	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157075800-3	chr2	157075283	157076283	+	778.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	3482.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69009539-2	chr3	69009039	69010039	+	778.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029529)	promoter-TSS (NR_029529)	-233.0	NR_029529	387175.0		NR_029529	ENSMUSG00000065580	Mir15b	Mirn15b|mir-15b|mmu-mir-15b	microRNA 15b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91091919-3	chr2	91091442	91092442	+	778.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4736.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181722152-2	chr2	181721652	181722652	+	778.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6462.0	NM_001318924	18389.0	Mm.285075	NM_011012	ENSMUSG00000027584	Oprl1	KOR-3|KOR3|LC132|MOR-C|NOP|ORGC|ORL1|Oprl|XOR1|morc	opioid receptor-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83263275-2	chr11	83262775	83263775	+	778.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23451.0	NM_001166028	237890.0	Mm.297670	NM_001166028	ENSMUSG00000082101	Slfn14	Gm20|Slfn14-ps	schlafen 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87539774-3	chr17	87539276	87540276	+	778.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25B|LTR|ERVK	-92841.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	0.0	1.5	1.5	4.5	6.0	13.0
Merged-chr1-177521297-3	chr1	177520798	177521798	+	778.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75477.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75091303-2	chr8	75090803	75091803	+	778.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2315.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	7.5	0.0	13.0	6.0	7.5	10.5
Merged-chr19-53317311-2	chr19	53316811	53317811	+	778.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	intron (NM_001360348, intron 1 of 5)	5866.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	1.0	0.0	0.0	0.0	0.0	1.0
Merged-chr1-171386909-2	chr1	171386397	171387397	+	778.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027893, exon 9 of 9)	3' UTR (NM_027893, exon 9 of 9)	-2063.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	1.0	4.5	3.0	0.0	6.5	3.5
Merged-chr5-5369541-2	chr5	5369041	5370041	+	778.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	(CA)n|Simple_repeat|Simple_repeat	10710.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-69401401-2	chr17	69400901	69401901	+	778.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15046.0	NR_026848	77533.0	Mm.266592	NR_026848		C030034I22Rik	-	RIKEN cDNA C030034I22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31243128-2	chr6	31242628	31243628	+	778.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040260, intron 1 of 5)	intron (NR_040260, intron 1 of 5)	22777.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-111429701-2	chr7	111429201	111430201	+	778.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-307026.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80475163-2	chr11	80474663	80475663	+	778.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1860.0	NM_009871	12569.0	Mm.142275	NM_009871	ENSMUSG00000048895	Cdk5r1	Cdk5r|D11Bwg0379e|p25|p35	cyclin-dependent kinase 5, regulatory subunit 1 (p35)	protein-coding	0.0	1.5	0.0	3.5	3.5	0.5
Merged-chr1-171033964-2	chr1	171033464	171034464	+	778.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Asn-AAC|tRNA|tRNA	15038.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32799721-2	chr12	32799221	32800221	+	778.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-20614.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	2.5	1.0	6.5	2.5	10.0	3.0
Merged-chr13-49002206-2	chr13	49001706	49002706	+	778.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34094.0	NR_015601	68128.0	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53889437-2	chr11	53888937	53889937	+	778.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011396, intron 1 of 9)	intron (NM_011396, intron 1 of 9)	2266.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-8567584-1	chr1	8567084	8568084	+	778.5	f1_c57bl6.idr	intron (NM_027671, intron 14 of 20)	L1_Mus4|LINE|L1	732293.0	NM_001290393	71096.0	Mm.336395	NM_027671	ENSMUSG00000025909	Sntg1	4933426D16Rik|G1SYN|SYN4	syntrophin, gamma 1	protein-coding	3.0	0.0	0.0	4.5	0.0	0.0
Merged-chr18-23311434-2	chr18	23310934	23311934	+	778.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285813, intron 1 of 21)	intron (NM_001285813, intron 1 of 21)	1414.0	NM_001285813	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167658083-2	chr2	167657583	167658583	+	778.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145538, intron 1 of 5)	intron (NM_145538, intron 1 of 5)	3461.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141367622-2	chr7	141367122	141368122	+	778.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-2512.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-20230562-2	chr12	20230062	20231062	+	778.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	585217.0	NR_015521	69513.0	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103944896-3	chr14	103944384	103945384	+	778.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	82258.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63150764-2	chr14	63150264	63151264	+	778.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360211, intron 7 of 7)	intron (NM_001360211, intron 7 of 7)	27123.0	NM_001360211	14137.0	Mm.474432	NM_010191	ENSMUSG00000021273	Fdft1	SQS|SS	farnesyl diphosphate farnesyl transferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66713613-2	chr9	66713072	66714072	+	778.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001306148)	promoter-TSS (NM_001306148)	-114.0	NM_178396	76459.0	Mm.277921	NM_178396	ENSMUSG00000032373	Car12	2310047E01Rik|AI314958|CA-XII|Ca12	carbonic anhydrase 12	protein-coding	2.0	0.0	0.0	6.0	0.0	1.0
Merged-chr16-10870685-2	chr16	10870185	10871185	+	778.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35626.0	NM_001162932	223970.0	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55737156-2	chr14	55736656	55737656	+	778.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	8528.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164793075-2	chr2	164792575	164793575	+	778.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133924)	TTS (NM_133924)	7054.0	NM_133924	101113.0	Mm.295647	NM_133924	ENSMUSG00000050373	Snx21	5730407K14Rik|AI481716	sorting nexin family member 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16614232-4	chr7	16613749	16614749	+	778.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136929, intron 1 of 2)	GC_rich|Low_complexity|Low_complexity	209.0	NR_136929	102634559.0	Mm.421602	NR_136928	ENSMUSG00000100583	Gm29443	-	predicted gene 29443	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51820155-3	chr11	51819663	51820663	+	778.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357588, intron 11 of 12)	B3|SINE|B2	37318.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141956826-2	chr4	141956326	141957326	+	778.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 10 of 31)	intron (NM_177868, intron 10 of 31)	-26166.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81144694-4	chr13	81144209	81145209	+	778.487488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	180635.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154256248-4	chr2	154255722	154256722	+	778.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1657.0	NM_175167	71425.0	Mm.389341	NM_175167	ENSMUSG00000067998	Bpifb9a	4833413D08Rik|AI413838	BPI fold containing family B, member 9A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131238640-3	chr1	131238143	131239143	+	778.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018750, intron 1 of 5)	intron (NM_018750, intron 1 of 5)	6535.0	NM_001313731	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14269379-4	chr2	14268880	14269880	+	778.424988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 7 of 29)	intron (NM_008625, intron 7 of 29)	8377.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-21054722-4	chr2	21054176	21055176	+	778.424988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85802.0	NR_033225	433408.0	Mm.386941	NR_033225		Gm13375	-	predicted gene 13375	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-58189118-3	chr2	58188612	58189612	+	778.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	25138.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31755208-4	chr16	31754704	31755704	+	778.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252436, intron 1 of 22)	intron (NM_001252436, intron 1 of 22)	854.0	NM_001252436	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-151424563-3	chr3	151424115	151425115	+	778.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13267.0	NM_133222	170757.0	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr1-16696790-3	chr1	16696305	16697305	+	778.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159711, intron 2 of 4)	intron (NM_001159711, intron 2 of 4)	8349.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	2.0	2.5	7.5	10.5	35.0	11.5
Merged-chr1-156425843-3	chr1	156425353	156426353	+	778.366638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4938.0	NM_001346967	77352.0	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	5.0	14.5	9.0	16.0	22.5	10.5
Merged-chr4-117677076-2	chr4	117676576	117677576	+	778.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_023178, intron 4 of 10)	intron (NM_023178, intron 4 of 10)	5149.0	NM_023178	66233.0	Mm.29142	NM_023178	ENSMUSG00000009640	Dmap1	1500016M21Rik|DNMAP1|DNMTAP1|Dmtap1|mKIAA1425	DNA methyltransferase 1-associated protein 1	protein-coding	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr6-136655238-4	chr6	136654784	136655784	+	778.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025806, intron 1 of 10)	B3|SINE|B2	6609.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	57.5	149.5	106.0	38.0	84.0	75.5
Merged-chr6-136621004-2	chr6	136620521	136621521	+	778.333374	f0_balb.idr|f1_balb.idr	intron (NM_025806, intron 6 of 10)	intron (NM_025806, intron 6 of 10)	40872.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	7.5	17.5	14.0	6.0	9.0	4.0
Merged-chr2-30600565-2	chr2	30600065	30601065	+	778.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_030137, intron 1 of 1)	intron (NM_030137, intron 1 of 1)	5521.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31218695-2	chr5	31218195	31219195	+	778.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008014, intron 1 of 9)	B1_Mus2|SINE|Alu	1850.0	NM_008014	14208.0	Mm.14501	NM_008014	ENSMUSG00000029147	Ppm1g	AI385652|Fin13	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	protein-coding	8.5	3.5	7.0	1.5	10.0	3.5
Merged-chr9-96398387-2	chr9	96397865	96398865	+	778.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33934.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	7.0	44.0	23.0	7.0	21.5	25.5
Merged-chr15-59772707-2	chr15	59772206	59773206	+	778.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22253.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	2.0	12.5	0.5	13.5	0.0	1.0
Merged-chr8-124278076-1	chr8	124277576	124278576	+	778.333313	f0_balb.idr	intron (NM_139272, intron 1 of 15)	intron (NM_139272, intron 1 of 15)	46682.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	5.5	14.5	4.5	7.0	22.5	12.5
Merged-chr17-71868084-3	chr17	71867662	71868662	+	778.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007439)	TTS (NM_007439)	86215.0	NM_030179	78785.0	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	0.0	0.0	1.5	1.0	3.0	17.5
Merged-chr17-87949228-4	chr17	87948764	87949764	+	778.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25786.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-83574449-3	chr9	83573948	83574948	+	778.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	26110.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	11.5	32.5	6.5	20.0	42.5	10.5
Merged-chr10-77369307-3	chr10	77368808	77369808	+	778.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024838, intron 1 of 11)	intron (NM_001024838, intron 1 of 11)	48965.0	NM_130895	110532.0	Mm.276815	NM_130895	ENSMUSG00000020262	Adarb1	1700057H01Rik|AW124433|AW558573|Adar2|BB220382|D10Bwg0447e|Red1	adenosine deaminase, RNA-specific, B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150829960-5	chr2	150829417	150830417	+	778.299988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153781, intron 19 of 19)	intron (NM_153781, intron 19 of 19)	12653.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-15542042-3	chr9	15541545	15542545	+	778.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359604, intron 2 of 2)	intron (NM_001359604, intron 2 of 2)	36550.0	NM_133214	170748.0	Mm.86572	NM_133214	ENSMUSG00000058173	Smco4	Fn5	single-pass membrane protein with coiled-coil domains 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77775710-3	chr15	77775204	77776204	+	778.266663	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 21 of 40)	intron (NM_022410, intron 21 of 40)	-18694.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116704013-4	chr4	116703513	116704513	+	778.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025962, intron 3 of 3)	B3|SINE|B2	4372.0	NM_025962	67096.0	Mm.252785	NM_025962	ENSMUSG00000028690	Mmachc	1810037K07Rik|CblC	methylmalonic aciduria cblC type, with homocystinuria	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-79785181-4	chr9	79784685	79785685	+	778.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133718, intron 1 of 6)	L2|LINE|L2	8245.0	NM_133718	69981.0	Mm.486324	NM_133718	ENSMUSG00000032328	Tmem30a	2010200I23Rik|AW540225|Cdc50a|D9Wsu20e	transmembrane protein 30A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122593084-2	chr6	122592584	122593584	+	778.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_031159, intron 3 of 7)	B3A|SINE|B2	9360.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.0	0.0	0.5	2.0	3.5	0.0
Merged-chr2-119758438-2	chr2	119757938	119758938	+	778.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008523)	promoter-TSS (NM_008523)	87.0	NM_206941	17005.0	Mm.1740	NM_008523	ENSMUSG00000027297	Ltk	-	leukocyte tyrosine kinase	protein-coding	2.0	0.0	0.5	6.0	0.0	0.0
Merged-chr4-28176971-4	chr4	28176471	28177471	+	778.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	SYNREP_MM|Satellite|Satellite	-636160.0	NM_001290434	13841.0	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155703631-2	chr4	155703131	155704131	+	778.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-1184.0	NM_026899	68991.0	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111150164-2	chr8	111149664	111150664	+	778.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	-4666.0	NR_040364	434350.0	Mm.442061	NR_040363		9430091E24Rik	-	RIKEN cDNA 9430091E24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17647635-6	chr6	17647222	17648222	+	778.236084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007604, intron 1 of 9)	L1MD1|LINE|L1	10712.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0.0	22.0	8.0	2.5	19.5	7.5
Merged-chr8-104253180-3	chr8	104252692	104253692	+	778.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037841, intron 1 of 2)	B3A|SINE|B2	2331.0	NM_001286383	75458.0	Mm.269219	NM_029295	ENSMUSG00000054400	Cklf	1700001C14Rik|1810018M11Rik|A730028G07Rik|C32|CKLF1|CKLF3|CKLF4|CKLF5|Cklf2|Cklf6|HSPC224|UCK-1	chemokine-like factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4601472-3	chr2	4600961	4601961	+	778.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 8 of 11)	intron (NM_001177844, intron 8 of 11)	41707.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100590704-4	chr5	100590229	100591229	+	778.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18524.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22259723-3	chr9	22259199	22260199	+	778.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181419, intron 1 of 4)	CpG	196.0	NM_181419	235048.0	Mm.292381	NM_181419	ENSMUSG00000062794	Zfp599	6720416P20	zinc finger protein 599	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55552630-4	chr1	55552030	55553030	+	778.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	L1_Mus2|LINE|L1	146584.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	20.5	26.0	42.0	24.0	38.5	41.5
Merged-chr17-35194445-3	chr17	35193956	35194956	+	778.1904910000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105939)	promoter-TSS (NR_105939)	-51.0	NM_008518	16994.0	Mm.1715	NM_008518	ENSMUSG00000024399	Ltb	AI662801|LTbeta|Tnfc|Tnfsf3|Tnlg1c|p33	lymphotoxin B	protein-coding	0.0	0.5	1.5	7.0	31.5	12.0
Merged-chr6-134133906-4	chr6	134133410	134134410	+	778.170837	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	98210.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	49.0	51.0	47.0	5.5	16.0	19.0
Merged-chr17-83219502-3	chr17	83218997	83219997	+	778.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134117, intron 1 of 6)	intron (NM_134117, intron 1 of 6)	4214.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168128673-2	chr2	168128173	168129173	+	778.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25840.0	NR_040327	77017.0	Mm.407822	NR_040327	ENSMUSG00000087648	E130018N17Rik	-	RIKEN cDNA E130018N17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-36186586-3	chr4	36186062	36187062	+	778.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166000, intron 4 of 8)	intron (NM_001166000, intron 4 of 8)	-341358.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-43281862-2	chr15	43281362	43282362	+	778.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008388, intron 1 of 12)	intron (NM_008388, intron 1 of 12)	874.0	NM_008388	16341.0	Mm.289992	NM_008388	ENSMUSG00000022336	Eif3e	48kDa|Eif3s6|Int6|eIF3-p46|eIF3-p48	eukaryotic translation initiation factor 3, subunit E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119079269-4	chr11	119078770	119079770	+	778.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007625, exon 5 of 5)	3' UTR (NM_007625, exon 5 of 5)	6967.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-8663138-3	chr6	8662626	8663626	+	778.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252266, intron 7 of 11)	intron (NM_001252266, intron 7 of 11)	95332.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30091411-3	chr7	30090881	30091881	+	778.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152814)	promoter-TSS (NM_152814)	-871.0	NM_152814	72556.0	Mm.441512	NM_152814	ENSMUSG00000078768	Zfp566	2700043M03Rik|mszf4	zinc finger protein 566	protein-coding	11.0	32.0	24.0	16.5	20.5	21.0
Merged-chr17-84106596-4	chr17	84106054	84107054	+	778.108337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2D|LTR|ERVL	27894.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-33310991-6	chr4	33310551	33311551	+	778.0888669999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305273, intron 1 of 15)	intron (NM_001305273, intron 1 of 15)	740.0	NM_001305273	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31925309-2	chr16	31924809	31925809	+	778.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8542.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-103065190-4	chr12	103064675	103065675	+	778.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081017, intron 14 of 48)	intron (NM_001081017, intron 14 of 48)	116316.0	NM_001081017	217843.0	Mm.387073	NM_177621	ENSMUSG00000021198	Unc79	9030205A07Rik|Mlca3	unc-79 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-78201715-3	chr13	78201204	78202204	+	778.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045195, intron 1 of 2)	intron (NR_045195, intron 1 of 2)	-2831.0	NM_010151	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-97461487-4	chr16	97460984	97461984	+	778.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010846, intron 1 of 10)	intron (NM_010846, intron 1 of 10)	1421.0	NM_010846	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7839128-4	chr9	7838573	7839573	+	778.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2016.0	NM_007465	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-17163840-2	chr1	17163340	17164340	+	778.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010267, exon 6 of 6)	3' UTR (NM_010267, exon 6 of 6)	18467.0	NM_010267	14545.0	Mm.18218	NM_010267	ENSMUSG00000025777	Gdap1	-	ganglioside-induced differentiation-associated-protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57667752-2	chr6	57667252	57668252	+	778.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	24326.0	NM_025574	66459.0	Mm.44201	NM_025574	ENSMUSG00000043162	Pyurf	2610022G08Rik|AI847956|Prey	Pigy upstream reading frame	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-142765335-2	chr6	142764835	142765835	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009908, intron 3 of 7)	intron (NM_009908, intron 3 of 7)	8649.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65863014-2	chr5	65862514	65863514	+	778.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081105)	promoter-TSS (NM_001081105)	-555.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111370013-2	chr8	111369517	111370517	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178086, intron 1 of 6)	intron (NM_178086, intron 1 of 6)	23804.0	NM_178086	338521.0	Mm.41083	NM_178086	ENSMUSG00000033579	Fa2h	FAAH|Faxdc1|G630055L08Rik	fatty acid 2-hydroxylase	protein-coding	1.0	2.5	1.5	1.0	2.5	1.5
Merged-chr12-21523099-2	chr12	21522553	21523553	+	778.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105617.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	0.0	0.0	0.0	1.0	0.0	1.5
Merged-chr13-55172320-2	chr13	55171829	55172829	+	778.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19511.0	NM_008011	14186.0	Mm.276715	NM_008011	ENSMUSG00000005320	Fgfr4	Fgfr-4	fibroblast growth factor receptor 4	protein-coding	3.5	0.5	0.5	8.0	1.0	2.5
Merged-chr13-73428600-2	chr13	73428100	73429100	+	778.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38783.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69975399-2	chr11	69974899	69975899	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018740, intron 4 of 8)	MIR|SINE|MIR	4931.0	NM_001253700	54351.0	Mm.13430	NM_018740	ENSMUSG00000018565	Elp5	Derp6|Rai12	elongator acetyltransferase complex subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25130809-2	chr7	25130309	25131309	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163556, intron 1 of 13)	intron (NM_001163556, intron 1 of 13)	1651.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88171353-2	chr3	88170853	88171853	+	778.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045997)	TTS (NR_045997)	6432.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3995677-2	chr11	3995177	3996177	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177691, intron 1 of 2)	intron (NM_001177691, intron 1 of 2)	5744.0	NM_001177691	53897.0	Mm.103414	NM_016922	ENSMUSG00000049721	Gal3st1	Cst|Gcst	galactose-3-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-78265608-2	chr16	78265108	78266108	+	778.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10154.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142960925-2	chr5	142960425	142961425	+	778.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007984, exon 1 of 5)	exon (NM_007984, exon 1 of 5)	570.0	NM_007984	14086.0	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50231497-2	chr11	50230997	50231997	+	778.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105884)	promoter-TSS (NR_105884)	-748.0	NR_105884	102466765.0		NR_105884	ENSMUSG00000098474	Mir6919	Gm27889|mmu-mir-6919	microRNA 6919	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25587002-3	chr14	25586483	25587483	+	778.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033492, exon 1 of 1)	non-coding (NR_033492, exon 1 of 1)	179.0	NR_033492	77592.0	Mm.444871	NM_175264		4931406H21Rik	-	RIKEN cDNA 4931406H21 gene	ncRNA	4.0	3.5	1.0	8.5	3.5	16.5
Merged-chr11-70469976-2	chr11	70469422	70470422	+	778.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9938.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	4.0	11.0	12.5	16.0	3.5	15.5
Merged-chr16-64876989-4	chr16	64876530	64877530	+	778.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	25029.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58517312-2	chr16	58516812	58517812	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 1 of 10)	intron (NM_001357433, intron 1 of 10)	6114.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	1.0	0.0	2.0	5.5	0.0	2.5
Merged-chr8-61616375-2	chr8	61615875	61616875	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	-25206.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69936634-2	chr8	69936134	69937134	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 2 of 12)	intron (NM_001286450, intron 2 of 12)	-34076.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	2.0	3.5	3.0	8.0	0.0	8.5
Merged-chr6-39166039-2	chr6	39165539	39166539	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033430, intron 8 of 19)	intron (NM_001033430, intron 8 of 19)	40734.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62872848-2	chr9	62872348	62873348	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138304, intron 4 of 4)	intron (NM_138304, intron 4 of 4)	-10824.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-40920783-2	chr13	40920283	40921283	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133219, intron 1 of 2)	intron (NM_133219, intron 1 of 2)	3149.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100409165-2	chr11	100408665	100409665	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176830, intron 7 of 7)	intron (NM_176830, intron 7 of 7)	5654.0	NM_176830	66180.0	Mm.4940	NM_176830	ENSMUSG00000006931	P3h4	1110036O03Rik|AI413214|Leprel4|Sc65	prolyl 3-hydroxylase family member 4 (non-enzymatic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89195308-2	chr15	89194808	89195808	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027081, intron 1 of 19)	intron (NM_027081, intron 1 of 19)	1166.0	NM_027081	69440.0	Mm.482128	NM_027081	ENSMUSG00000015377	Dennd6b	1700027J05Rik|AI414881|Fam116b	DENN/MADD domain containing 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-6247683-2	chr13	6247183	6248183	+	778.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	AmnSINE1|SINE|Deu	-300474.0	NM_145131	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148401065-3	chr2	148400583	148401583	+	778.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5706.0	NM_009219	20608.0	Mm.35324	NM_009219	ENSMUSG00000037014	Sstr4	Smstr4|sst4	somatostatin receptor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-148052054-2	chr3	148051554	148052554	+	778.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	902581.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139223623-2	chr4	139223123	139224123	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	29512.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	4.0	14.5	27.0	3.0	24.5	14.0
Merged-chr16-90219827-3	chr16	90219336	90220336	+	778.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011434)	promoter-TSS (NM_011434)	-906.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20992785-2	chr11	20992285	20993285	+	778.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98539.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-105227858-1	chr9	105227358	105228358	+	778.0	f1_c57bl6.idr	intron (NM_172461, intron 13 of 15)	intron (NM_172461, intron 13 of 15)	-82776.0	NM_028562	73532.0	Mm.23516	NM_028562	ENSMUSG00000032566	1700080E11Rik	AI429110|Tseg8	RIKEN cDNA 1700080E11 gene	protein-coding	0.0	6.0	2.0	7.0	3.0	1.5
Merged-chr13-107906803-1	chr13	107906303	107907303	+	778.0	f1_balb.idr	Intergenic	Intergenic	-16739.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	1.0	0.0	0.5	0.0	3.0	3.0
Merged-chr9-106314856-1	chr9	106314356	106315356	+	778.0	f0_balb.idr	intron (NM_027354, intron 9 of 10)	intron (NM_027354, intron 9 of 10)	33795.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	1.5	8.0	2.5	7.5	8.5	13.5
Merged-chr13-48512976-2	chr13	48512476	48513476	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164575, intron 1 of 4)	intron (NM_001164575, intron 1 of 4)	434.0	NM_001164575	67911.0	Mm.251375	NM_026450	ENSMUSG00000050954	Zfp169	1700025J14Rik|4930429A13Rik|BE688704	zinc finger protein 169	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97236714-2	chr6	97236214	97237214	+	778.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16066.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148994715-2	chr5	148994214	148995214	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_102383, intron 1 of 1)	intron (NR_102383, intron 1 of 1)	500.0	NR_102383	319982.0	Mm.33303	NR_102383	ENSMUSG00000106951	5930430L01Rik	-	RIKEN cDNA 5930430L01 gene	ncRNA	16.5	7.5	21.0	12.0	11.0	12.5
Merged-chr5-6508988-2	chr5	6508488	6509488	+	778.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-759671.0	NM_027399	70358.0	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-80951930-2	chr8	80951461	80952461	+	778.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62945.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	26.5	71.5	52.0	33.0	122.0	63.5
Merged-chr11-101919917-5	chr11	101919441	101920441	+	778.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25587.0	NM_010791	17285.0	Mm.3404	NM_010791	ENSMUSG00000001493	Meox1	AI385561|D330041M02Rik|Mox-1|Mox1	mesenchyme homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100674982-2	chr15	100674425	100675425	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033612, intron 7 of 7)	intron (NM_033612, intron 7 of 7)	-5425.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	34.5	38.5	39.5	29.5	68.0	45.5
Merged-chr13-41302854-3	chr13	41302356	41303356	+	778.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53012.0	NM_001135577	108934.0	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65586116-1	chr3	65585616	65586616	+	778.0	f0_balb.idr	Intergenic	B1_Mur4|SINE|Alu	-56702.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	9.0	20.5	12.5	10.0	4.0	15.5
Merged-chr6-31182523-2	chr6	31182023	31183023	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 1 of 2)	intron (NR_110470, intron 1 of 2)	35951.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47454818-3	chr17	47454299	47455299	+	778.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145489, intron 2 of 4)	intron (NM_145489, intron 2 of 4)	-17424.0	NM_029296	75462.0	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125517985-3	chr8	125517494	125518494	+	778.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 2 of 21)	RSINE1|SINE|B4	-25161.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	12.0	0.0	2.5	10.5	2.0	3.0
Merged-chr18-27021733-3	chr18	27021221	27022221	+	778.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1267564.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166081077-1	chr2	166080577	166081577	+	778.0	f1_c57bl6.idr	intron (NM_001252579, intron 13 of 20)	intron (NM_001252579, intron 13 of 20)	74208.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-52995923-1	chr19	52995423	52996423	+	778.0	f1_c57bl6.idr	intron (NM_133216, intron 19 of 20)	intron (NM_133216, intron 19 of 20)	14833.0	NR_105834	102465220.0		NR_105834	ENSMUSG00000098730	Mir6407	Gm27832|mmu-mir-6407	microRNA 6407	ncRNA	1.0	0.5	3.0	0.0	4.0	0.0
Merged-chr3-13171710-2	chr3	13171210	13172210	+	778.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS2|LTR|ERV1	-299945.0	NM_001357033	76897.0	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78330813-2	chr15	78330313	78331313	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358854, intron 2 of 14)	B4|SINE|B4	4823.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-87037033-2	chr4	87036533	87037533	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110240, intron 4 of 9)	L2a|LINE|L2	162619.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	1.0	0.0	0.5	0.0	4.5	0.0
Merged-chr6-145176882-2	chr6	145176384	145177384	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177222, intron 14 of 15)	intron (NM_177222, intron 14 of 15)	31409.0	NM_001361633	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	9.0	5.0	2.5	0.0	2.5	0.0
Merged-chr1-166844201-2	chr1	166843701	166844701	+	778.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	155529.0	NR_037988	100503962.0	Mm.216842	NR_037988	ENSMUSG00000102548	Gm16701	-	predicted gene, 16701	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54920549-2	chr18	54920049	54921049	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	69631.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5954068-2	chr19	5953568	5954568	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 5 of 17)	intron (NM_001164057, intron 5 of 17)	10138.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	4.5	5.0	5.0	2.0	0.0	5.5
Merged-chr4-141469932-2	chr4	141469417	141470417	+	778.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_019763, exon 14 of 16)	exon (NM_019763, exon 14 of 16)	25244.0	NM_009541	22642.0	Mm.389590	NM_009541	ENSMUSG00000006215	Zbtb17	AA589413|Lp-1|Miz1|Zfp100|mZ13	zinc finger and BTB domain containing 17	protein-coding	0.0	4.0	0.0	0.0	0.0	0.0
Merged-chr13-99189744-2	chr13	99189244	99190244	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	4921.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23137206-2	chr16	23136706	23137706	+	778.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9330.0	NM_009605	11450.0	Mm.3969	NM_009605	ENSMUSG00000022878	Adipoq	30kDa|APN|Acdc|Acrp30|Ad|GBP28|adipo|apM1	adiponectin, C1Q and collagen domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-44292463-4	chr12	44291967	44292967	+	777.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026164, intron 5 of 9)	intron (NM_026164, intron 5 of 9)	23313.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	6.0	0.0	2.5	6.5	3.5	1.5
Merged-chr18-25904903-3	chr18	25904414	25905414	+	777.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-150757.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-48572314-4	chr13	48571785	48572785	+	777.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34013.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27938587-4	chr3	27938112	27939112	+	777.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164056)	promoter-TSS (NM_001164056)	-68.0	NM_001164056	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84539391-3	chr1	84538907	84539907	+	777.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152915, intron 4 of 12)	B4A|SINE|B4	-156432.0	NR_039588	100628595.0		NR_039588	ENSMUSG00000093254	Mir5126	mir-5126|mmu-mir-5126|mu-mir-5126	microRNA 5126	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36540747-3	chr18	36540236	36541236	+	777.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001271546, exon 20 of 22)	exon (NM_001271546, exon 20 of 22)	12584.0	NM_001271545	240215.0	Mm.135463	NM_172830	ENSMUSG00000024485	Slc4a9	AE4|D630003B07|D630024F24Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 9	protein-coding	9.5	19.0	14.0	10.0	8.5	10.0
Merged-chr13-91908389-4	chr13	91907899	91908899	+	777.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009027, intron 6 of 14)	intron (NM_009027, intron 6 of 14)	-31514.0	NM_198415	76722.0	Mm.316438	NM_198415	ENSMUSG00000021622	Ckmt2	2300008A19Rik|ScCKmit	creatine kinase, mitochondrial 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23020433-4	chr11	23019924	23020924	+	777.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028672, exon 3 of 4)	exon (NM_028672, exon 3 of 4)	7037.0	NM_028672	73873.0	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62068186-4	chr18	62067695	62068695	+	777.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	111786.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	6.0	38.0	13.0	9.0	32.0	14.5
Merged-chr1-44034504-3	chr1	44034002	44035002	+	777.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-14496.0	NM_001013799	433294.0	Mm.123621	NM_001013799	ENSMUSG00000047343	Mettl21c	A530098C11Rik	methyltransferase like 21C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-72847883-3	chr12	72847408	72848408	+	777.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69857.0	NM_029444	75801.0	Mm.242892	NM_029444	ENSMUSG00000021098	4930447C04Rik	4921504I02Rik|A930035O15Rik|Six6OS|Six6as|Six6os1	RIKEN cDNA 4930447C04 gene	protein-coding	0.0	1.0	0.0	3.5	0.0	2.5
Merged-chr11-22930292-3	chr11	22929760	22930760	+	777.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361661, intron 2 of 2)	ORR1B1|LTR|ERVL-MaLR	-41745.0	NM_011663	22183.0	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44502332-2	chr9	44501832	44502832	+	777.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357490, intron 3 of 7)	intron (NM_001357490, intron 3 of 7)	3196.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-61645649-3	chr2	61645147	61646147	+	777.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149323, intron 8 of 9)	intron (NR_149323, intron 8 of 9)	52550.0	NR_149323	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55505989-3	chr16	55505519	55506519	+	777.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11288.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166290991-2	chr2	166290491	166291491	+	777.833313	f1_balb.idr|f1_c57bl6.idr	intron (NR_033467, intron 2 of 2)	intron (NR_033467, intron 2 of 2)	17083.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr13-49055868-3	chr13	49055392	49056392	+	777.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290313, intron 23 of 29)	intron (NM_001290313, intron 23 of 29)	87780.0	NR_015601	68128.0	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20827024-2	chr14	20826524	20827524	+	777.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-9638.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	60.5	85.5	48.5	54.5	85.0	49.0
Merged-chr6-122928869-4	chr6	122928373	122929373	+	777.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199311, intron 3 of 5)	intron (NM_199311, intron 3 of 5)	7025.0	NM_199311	269799.0	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96408038-3	chr10	96407523	96408523	+	777.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	181816.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-126851505-2	chr6	126850988	126851988	+	777.783325	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1610.0	NM_009650	11642.0	Mm.87748	NM_009650	ENSMUSG00000030344	Akap3	Prka3	A kinase (PRKA) anchor protein 3	protein-coding	1.5	0.5	6.0	5.5	11.0	4.0
Merged-chr4-59225075-3	chr4	59224589	59225589	+	777.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34962.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	1.5	4.5	6.0	1.0	1.5	4.0
Merged-chr5-139284824-3	chr5	139284323	139285323	+	777.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	31326.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30828323-3	chr14	30827818	30828818	+	777.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028839, intron 1 of 7)	intron (NM_028839, intron 1 of 7)	2724.0	NM_028839	69179.0	Mm.143025	NM_028839	ENSMUSG00000006526	Tmem110	1810038N08Rik|2310014H19Rik|AW554125|STIMATE	transmembrane protein 110	protein-coding	22.0	25.0	19.5	24.5	34.5	23.5
Merged-chr2-120085221-2	chr2	120084721	120085721	+	777.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51788.0	NM_145378	211429.0	Mm.41467	NM_145378	ENSMUSG00000098488	Pla2g4b	A030011C02Rik|Gm1013|cPLA2-beta	phospholipase A2, group IVB (cytosolic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-105122043-1	chr9	105121543	105122543	+	777.75	f0_balb.idr	Intergenic	Intergenic	9762.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	17.5	44.0	37.5	47.5	70.0	60.0
Merged-chr12-112656945-2	chr12	112656445	112657445	+	777.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001165894, exon 11 of 14)	exon (NM_001165894, exon 11 of 14)	2406.0	NR_105904	102465566.0		NR_105904	ENSMUSG00000098380	Mir6939	Gm27498|mmu-mir-6939	microRNA 6939	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52608953-2	chr13	52608453	52609453	+	777.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 1 of 13)	intron (NM_011518, intron 1 of 13)	12071.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117862924-2	chr10	117862424	117863424	+	777.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-16950.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129491504-2	chr4	129491004	129492004	+	777.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080442)	promoter-TSS (NM_080442)	314.0	NM_001085491	68233.0	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98513848-4	chr15	98513353	98514353	+	777.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	5981.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121714934-2	chr5	121714434	121715434	+	777.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_009125, intron 1 of 24)	B2_Mm1a|SINE|B2	3325.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr12-111469681-4	chr12	111469177	111470177	+	777.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16146.0	NM_001033248	212539.0	Mm.81916	NM_001033248	ENSMUSG00000010529	Gm266	-	predicted gene 266	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-115984276-4	chr4	115983766	115984766	+	777.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33658.0	NM_010173	14073.0	Mm.256025	NM_010173	ENSMUSG00000034171	Faah	AW412498	fatty acid amide hydrolase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41481533-4	chr19	41480982	41481982	+	777.700012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43770.0	NM_001326287	627352.0	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr17-24168007-3	chr17	24167492	24168492	+	777.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361534, intron 1 of 3)	intron (NM_001361534, intron 1 of 3)	817.0	NM_001361535	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	181.0	522.5	298.0	105.5	380.5	260.5
Merged-chr14-54222573-3	chr14	54222068	54223068	+	777.6777950000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31361.0	NM_001113358	13135.0	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	1.0	11.0	3.0	0.0	0.0	2.0
Merged-chr3-89317007-4	chr3	89316492	89317492	+	777.670837	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010108, intron 1 of 4)	intron (NM_010108, intron 1 of 4)	5887.0	NM_010108	13638.0	Mm.331159	NM_010108	ENSMUSG00000028039	Efna3	AW494418|EFL-2|Ehk1-L|Epl3|LERK-3	ephrin A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-67941110-3	chr14	67940615	67941615	+	777.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7543.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9611428-3	chr13	9610920	9611920	+	777.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 22 of 36)	intron (NM_001081426, intron 22 of 36)	152390.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122217168-2	chr5	122216668	122217668	+	777.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359454, intron 3 of 7)	intron (NM_001359454, intron 3 of 7)	6881.0	NM_028752	74096.0	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-39060161-3	chr8	39059691	39060691	+	777.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357304, intron 2 of 7)	ORR1D1|LTR|ERVL-MaLR	54346.0	NM_001357306	80286.0	Mm.272722	NM_030254	ENSMUSG00000039530	Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding	7.0	7.0	12.0	11.5	6.5	7.0
Merged-chr16-93744165-3	chr16	93743666	93744666	+	777.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357118, intron 3 of 35)	intron (NM_001357118, intron 3 of 35)	14067.0	NM_001357118	70028.0	Mm.23230	NM_026700	ENSMUSG00000022946	Dopey2	0610038M01Rik|2610510B01Rik|AI503246|C21orf5|mKIAA0933	dopey family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88259647-2	chr1	88259147	88260147	+	777.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_198652, exon 8 of 8)	3' UTR (NM_198652, exon 8 of 8)	9761.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105622121-2	chr5	105621621	105622621	+	777.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77848.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12655275-4	chr18	12654773	12655773	+	777.641663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028341, intron 1 of 13)	intron (NM_028341, intron 1 of 13)	11740.0	NM_028341	72747.0	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121035400-3	chr14	121034842	121035842	+	777.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134082)	promoter-TSS (NM_134082)	-232.0	NM_134082	223254.0	Mm.223980	NM_134082	ENSMUSG00000025555	Farp1	AW228844|BC030329|Cdep	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-92740696-4	chr7	92740198	92741198	+	777.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_015510)	TTS (NR_015510)	761.0	NR_015510	666737.0	Mm.473620	NR_015510	ENSMUSG00000074024	4632427E13Rik	AU015482	RIKEN cDNA 4632427E13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-129786129-3	chr5	129785658	129786658	+	777.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133900, intron 1 of 7)	B1_Mur1|SINE|Alu	1095.0	NM_133900	100678.0	Mm.271784	NM_133900	ENSMUSG00000029446	Psph	AI480570|PSP|PSPase	phosphoserine phosphatase	protein-coding	32.0	49.0	18.5	25.0	37.5	22.5
Merged-chr17-35163592-2	chr17	35163092	35164092	+	777.5625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199044, intron 1 of 30)	intron (NM_001199044, intron 1 of 30)	1285.0	NM_001199044	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-126921718-4	chr6	126921201	126922201	+	777.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207210, intron 1 of 14)	intron (NM_207210, intron 1 of 14)	138.0	NM_207210	101320.0	Mm.44896	NM_207210	ENSMUSG00000030345	Dyrk4	AW049118|Dyrk4a|Dyrk4b	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4	protein-coding	4.5	8.0	5.5	1.0	5.0	6.5
Merged-chr10-117304561-3	chr10	117304055	117305055	+	777.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11687.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-19952193-3	chr4	19951691	19952691	+	777.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29625.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	11.5	14.0	2.5	8.0	27.5	3.5
Merged-chr8-84363917-3	chr8	84363391	84364391	+	777.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51473.0	NM_001252060	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	6.5	0.0	4.0	7.0	1.0	3.5
Merged-chr9-120586746-4	chr9	120586264	120587264	+	777.520874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9433.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8990374-2	chr19	8989874	8990874	+	777.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039959, intron 1 of 5)	(TGGGGG)n|Simple_repeat|Simple_repeat	1090.0	NM_001286518	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	4.5	0.0	1.0	2.0	0.0	0.0
Merged-chr8-126660908-2	chr8	126660340	126661340	+	777.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-67404.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	5.0	12.5	15.0	10.0	12.5	14.0
Merged-chr8-125728602-2	chr8	125728102	125729102	+	777.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5601.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89000479-3	chr6	88999986	89000986	+	777.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95624.0	NR_134978	232217.0	Mm.281744	NM_175017	ENSMUSG00000055403	4933427D06Rik	-	RIKEN cDNA 4933427D06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3297414-2	chr7	3296914	3297914	+	777.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_016969, exon 3 of 3)	exon (NM_016969, exon 3 of 3)	4386.0	NM_001093766	50918.0	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	0.0	11.5	3.5	0.0	1.5	2.5
Merged-chr8-120109937-2	chr8	120109437	120110437	+	777.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4215.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-33424282-2	chr14	33423782	33424782	+	777.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310453, intron 1 of 11)	intron (NM_001310453, intron 1 of 11)	-13258.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-74935439-2	chr8	74934939	74935939	+	777.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58211.0	NM_001316753	70823.0	Mm.261739	NM_178017	ENSMUSG00000034518	Hmgxb4	4733401K04Rik|AI316803|Hmgb2l1	HMG box domain containing 4	protein-coding	1.0	2.0	5.0	0.0	0.0	6.0
Merged-chr17-71531066-2	chr17	71530566	71531566	+	777.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-4209.0	NM_023294	67052.0	Mm.225956	NM_023294	ENSMUSG00000024056	Ndc80	2610020P18Rik|AV139730|HEC|HEC1|Kntc2	NDC80 kinetochore complex component	protein-coding	0.0	5.0	4.5	0.0	0.5	0.0
Merged-chr7-75667750-4	chr7	75667233	75668233	+	777.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 10 of 36)	intron (NM_029332, intron 10 of 36)	-180605.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122466201-3	chr7	122465685	122466685	+	777.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 5 of 16)	A-rich|Low_complexity|Low_complexity	177060.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88663502-2	chr8	88663002	88664002	+	777.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 3 of 12)	intron (NM_145857, intron 3 of 12)	16155.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	23.0	27.0	16.0	26.0	15.5	25.5
Merged-chr8-124948973-2	chr8	124948473	124949473	+	777.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_053207, exon 1 of 5)	exon (NM_053207, exon 1 of 5)	281.0	NM_053207	112405.0	Mm.140619	NM_053207	ENSMUSG00000031987	Egln1	AI503754|C1orf12|HIF-PH2|HPH-2|Hif-p4h-2|ORF13|Phd2|SM-20	egl-9 family hypoxia-inducible factor 1	protein-coding	0.0	0.0	3.5	1.5	0.0	0.0
Merged-chr14-66281918-2	chr14	66281418	66282418	+	777.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172498)	promoter-TSS (NM_172498)	-866.0	NM_001162365	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	2.0	1.0	4.0	6.0	6.0	1.0
Merged-chr1-125437258-2	chr1	125436758	125437758	+	777.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1531.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86257093-2	chr11	86256593	86257593	+	777.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027421, intron 1 of 24)	intron (NM_027421, intron 1 of 24)	475.0	NM_027421	70422.0	Mm.171304	NM_027421	ENSMUSG00000018068	Ints2	2810417D08Rik|AA408260|AI987735|mKIAA1287	integrator complex subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-144553281-2	chr7	144552781	144553781	+	777.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195086, intron 1 of 31)	intron (NM_001195086, intron 1 of 31)	448.0	NM_001033319	233977.0	Mm.490347	NM_001033319	ENSMUSG00000037519	Ppfia1	C030014K08Rik|C87158|LIP.1|LIP1	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50542780-2	chr6	50542280	50543280	+	777.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23694.0	NM_007808	13063.0	Mm.35389	NM_007808	ENSMUSG00000063694	Cycs	-	cytochrome c, somatic	protein-coding	0.0	3.5	2.5	4.5	0.0	0.0
Merged-chr2-181234896-2	chr2	181234396	181235396	+	777.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_183162, exon 9 of 19)	exon (NM_183162, exon 9 of 19)	7131.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80335256-2	chr7	80334756	80335756	+	777.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133952, intron 6 of 19)	intron (NM_133952, intron 6 of 19)	4963.0	NM_133952	101869.0	Mm.243024	NM_133952	ENSMUSG00000030533	Unc45a	AW538196	unc-45 myosin chaperone A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr2-145167428-2	chr2	145166928	145167928	+	777.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356497)	promoter-TSS (NM_001356497)	-347.0	NM_001356497	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113755669-2	chr6	113755169	113756169	+	777.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001036684, intron 19 of 19)	intron (NM_001036684, intron 19 of 19)	-14988.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115412057-2	chr11	115411557	115412557	+	777.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347645, exon 6 of 6)	3' UTR (NM_001347645, exon 6 of 6)	7862.0	NM_027862	71679.0	Mm.371641	NM_027862	ENSMUSG00000034566	Atp5h	0610009D10Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34980142-2	chr17	34979642	34980642	+	777.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013558)	TTS (NM_013558)	-1712.0	NM_001110101	27756.0	Mm.165735	NM_030597	ENSMUSG00000007050	Lsm2	D17H6S56E-2|D17H6S56E2|Dmapl|Dmpkap|G7b|Sm-X5|SmX5|snRNP	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88684893-2	chr3	88684393	88685393	+	777.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028814)	promoter-TSS (NM_028814)	-894.0	NM_028814	74200.0	Mm.251800	NM_028814	ENSMUSG00000028060	2810403A07Rik	A430106P18Rik|AI256352|AI451678|Blom7|Khdc4|Kiaa0907	RIKEN cDNA 2810403A07 gene	protein-coding	11.0	32.0	8.0	23.0	44.0	7.5
Merged-chr10-110890859-2	chr10	110890359	110891359	+	777.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045979, intron 2 of 2)	intron (NR_045979, intron 2 of 2)	5648.0	NR_045979	75630.0	Mm.392786	NR_045979	ENSMUSG00000101801	1700020G17Rik	4930480D05Rik	RIKEN cDNA 1700020G17 gene	ncRNA	0.0	1.0	0.0	0.0	1.0	0.0
Merged-chr18-82589103-2	chr18	82588603	82589603	+	777.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	34595.0	NM_001025254	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64932939-3	chr5	64932484	64933484	+	777.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030682)	promoter-TSS (NM_030682)	-285.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13465833-2	chr9	13465333	13466333	+	777.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34472.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	8.0	8.5	7.5	7.5	17.5	19.0
Merged-chr8-46147713-2	chr8	46147213	46148213	+	777.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15938.0	NM_025747	66756.0	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430	cilia and flagella associated protein 97	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91733133-2	chr12	91732633	91733633	+	777.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 3 of 6)	intron (NM_175367, intron 3 of 6)	53303.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30595603-2	chr16	30595103	30596103	+	777.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4120.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21864653-1	chr9	21864153	21865153	+	777.5	f0_balb.idr	Intergenic	RSINE1|SINE|B4	-12018.0	NM_177030	319899.0	Mm.128153	NM_177030	ENSMUSG00000032198	Dock6	2410095B20Rik|4931431C02Rik|C330023D02Rik|mKIAA1395	dedicator of cytokinesis 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47241679-2	chr14	47241160	47242160	+	777.5	f0_balb.idr|f1_balb.idr	exon (NM_172598, exon 25 of 25)	exon (NM_172598, exon 25 of 25)	35197.0	NM_001360532	218973.0	Mm.265615	NM_172598	ENSMUSG00000037572	Wdhd1	A630092E18|AND-1|D630024B06Rik	WD repeat and HMG-box DNA binding protein 1	protein-coding	23.0	42.5	36.5	27.0	41.0	31.0
Merged-chr12-8314468-2	chr12	8313968	8314968	+	777.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021429, intron 1 of 6)	intron (NM_021429, intron 1 of 6)	1035.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-73619168-2	chr8	73618668	73619668	+	777.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL2|LINE|L1	-265628.0	NM_010687	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96871630-2	chr11	96871130	96872130	+	777.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21237.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	1.0	0.0	0.0	6.0	0.0	0.0
Merged-chr1-144380226-2	chr1	144379726	144380726	+	777.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-131122.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10280479-2	chr16	10279979	10280979	+	777.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	33489.0	NM_007929	13731.0	Mm.246009	NM_007929	ENSMUSG00000022505	Emp2	XMP	epithelial membrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-119859200-4	chr6	119858716	119859716	+	777.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	11023.0	NR_030776	67289.0	Mm.418299	NR_030776		3110021A11Rik	-	RIKEN cDNA 3110021A11 gene	ncRNA	10.0	27.0	11.0	4.0	32.0	13.5
Merged-chr1-37868010-6	chr1	37867524	37868524	+	777.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2726.0	NM_001290720	211484.0	Mm.332756	NM_207228	ENSMUSG00000060771	Tsga10	4933432N21Rik|AI843383|Gm217|Mtsga10	testis specific 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-57243826-3	chr12	57243328	57244328	+	777.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164370, intron 1 of 9)	ORR1B1|LTR|ERVL-MaLR	13403.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35533305-4	chr12	35532645	35533645	+	777.4375	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001314027, intron 1 of 9)	intron (NM_001314027, intron 1 of 9)	1844.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	44.0	78.5	31.0	23.0	73.0	31.5
Merged-chr11-69793569-3	chr11	69793084	69794084	+	777.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009601, exon 6 of 11)	exon (NM_009601, exon 6 of 11)	2353.0	NM_009601	11443.0	Mm.86425	NM_009601	ENSMUSG00000041189	Chrnb1	Achr-2|Acrb	cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191268819-2	chr1	191268286	191269286	+	777.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44332.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	10.5	21.5	20.0	3.5	13.0	14.5
Merged-chr4-148153018-2	chr4	148152518	148153518	+	777.400024	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163707)	promoter-TSS (NM_001163707)	-883.0	NM_001163707	50762.0	Mm.27445	NM_015797	ENSMUSG00000055401	Fbxo6	AA408845|FBG2|Fbs2|Fbx6b|Fbxo6b	F-box protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-63393037-3	chr17	63392550	63393550	+	777.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 4 of 8)	intron (NM_015794, intron 4 of 8)	-80077.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85427991-3	chr12	85427507	85428507	+	777.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-45883.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3506122-4	chr7	3505619	3506619	+	777.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3495.0	NM_177363	245126.0	Mm.245747	NM_177363	ENSMUSG00000053338	Tarm1	9930022N03Rik|Gm9904|OLT-2	T cell-interacting, activating receptor on myeloid cells 1	protein-coding	11.0	10.5	5.5	3.0	2.5	2.5
Merged-chr7-44898575-2	chr7	44898075	44899075	+	777.375	f1_balb.idr|f1_c57bl6.idr	exon (NM_027376, exon 6 of 11)	exon (NM_027376, exon 6 of 11)	2496.0	NM_027376	70300.0	Mm.276298	NM_027376	ENSMUSG00000011658	Fuz	2600013E07Rik|b2b1273Clo	fuzzy planar cell polarity protein	protein-coding	0.0	3.5	0.0	0.0	0.0	0.0
Merged-chr7-141381423-6	chr7	141380844	141381844	+	777.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10816.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5092380-2	chr19	5091880	5092880	+	777.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001302333)	TTS (NM_001302333)	3842.0	NM_026553	68090.0	Mm.44202	NM_026553	ENSMUSG00000024875	Yif1a	5330422J23Rik|54TM|Yif1|Yif1p	Yip1 interacting factor homolog A (S. cerevisiae)	protein-coding	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81358965-2	chr13	81358465	81359465	+	777.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 83 of 89)	intron (NM_054053, intron 83 of 89)	274179.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135270213-2	chr4	135269713	135270713	+	777.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	2547.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79350119-2	chr15	79349619	79350619	+	777.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304832, intron 1 of 2)	intron (NM_001304832, intron 1 of 2)	1717.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	0.0	2.5	0.5	0.0	0.0	0.5
Merged-chr9-7576015-2	chr9	7575515	7576515	+	777.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310717, intron 4 of 9)	intron (NM_001310717, intron 4 of 9)	4619.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-56335558-3	chr13	56335037	56336037	+	777.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27363.0	NR_046061	100038494.0	Mm.370447	NR_046061	ENSMUSG00000074885	Gm10782	-	predicted gene 10782	ncRNA	0.0	14.5	7.5	3.5	26.0	19.0
Merged-chr9-31130973-3	chr9	31130486	31131486	+	777.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011176, intron 1 of 18)	intron (NM_011176, intron 1 of 18)	813.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-33797576-3	chr8	33797083	33798083	+	777.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286168, intron 5 of 7)	intron (NM_001286168, intron 5 of 7)	-49813.0	NM_001206849	72632.0	Mm.443483	NM_001206849	ENSMUSG00000094500	Smim18	2700090O03Rik|AI835723	small integral membrane protein 18	protein-coding	0.0	0.0	0.5	0.0	0.0	2.0
Merged-chr4-127027498-4	chr4	127027026	127028026	+	777.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045010, intron 9 of 11)	intron (NR_045010, intron 9 of 11)	6225.0	NM_023603	71514.0	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121299451-4	chr9	121299049	121300049	+	777.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	2047.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	41.5	56.5	28.0	11.0	39.5	10.5
Merged-chr14-67813741-3	chr14	67813232	67814232	+	777.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177780, intron 20 of 51)	intron (NM_177780, intron 20 of 51)	46013.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	0.0	7.0	10.0	8.0	1.0	5.0
Merged-chr4-47311660-4	chr4	47311156	47312156	+	777.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 39 of 39)	intron (NM_009928, intron 39 of 39)	-41566.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124448032-2	chr5	124447532	124448532	+	777.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310725, intron 2 of 6)	intron (NM_001310725, intron 2 of 6)	1328.0	NM_001310727	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88290104-4	chr1	88289626	88290626	+	777.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-12547.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70554069-3	chr8	70553561	70554561	+	777.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	14386.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	0.0	3.0	0.0	0.0	2.5	0.0
Merged-chr19-53783808-3	chr19	53783295	53784295	+	777.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170847, intron 1 of 13)	Lx9|LINE|L1	106489.0	NM_001170847	73713.0	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	0.0	3.0	1.0	0.0	3.0	1.0
Merged-chr12-32641470-2	chr12	32640970	32641970	+	777.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14-int|LTR|ERV1	-178865.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.0	3.5	3.5	2.5	4.5	2.0
Merged-chr4-86692977-2	chr4	86692446	86693446	+	777.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22887.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	3.0	1.5	0.5	0.0	1.5	0.0
Merged-chr2-164949569-2	chr2	164949076	164950076	+	777.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_013599, intron 3 of 12)	CpG-8834	1357.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr11-79521641-2	chr11	79521141	79522141	+	777.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077496, intron 1 of 1)	intron (NM_001077496, intron 1 of 1)	2121.0	NM_001077496	216984.0	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	4.5	25.0	21.0	13.0	43.0	15.5
Merged-chr12-111693463-4	chr12	111693026	111694026	+	777.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15421.0	NM_177374	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118900467-3	chr2	118899977	118900977	+	777.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1138.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	1.0	1.5	1.5	0.0	2.0	0.0
Merged-chr16-12089856-4	chr16	12089352	12090352	+	777.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028277, intron 2 of 4)	intron (NM_028277, intron 2 of 4)	105739.0	NM_001174086	72555.0	Mm.310139	NM_028277	ENSMUSG00000022494	Shisa9	2700045P11Rik|Ckamp44	shisa family member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20401017-4	chr11	20400501	20401501	+	777.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68288.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-167343881-1	chr1	167343381	167344381	+	777.200012	f0_balb.idr	Intergenic	Intergenic	-6110.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89299559-3	chr3	89299065	89300065	+	777.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	-18614.0	NM_001162425	13636.0	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-24556256-4	chr19	24555811	24556811	+	777.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008846)	promoter-TSS (NM_008846)	-439.0	NM_008846	18719.0	Mm.217214	NM_008846	ENSMUSG00000024867	Pip5k1b	PI4P5K-I[b]|PIP5K1-beta|PIP5KIbeta|Pipk5b|STM7	phosphatidylinositol-4-phosphate 5-kinase, type 1 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45054501-3	chr2	45054070	45055070	+	777.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-31393.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66395550-2	chr7	66395050	66396050	+	777.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_053080, intron 12 of 12)	intron (NM_053080, intron 12 of 12)	-7209.0	NM_146191	233328.0	Mm.33284	NM_146191	ENSMUSG00000015133	Lrrk1	AW319595|C230002E15Rik|D130026O16Rik|mKIAA1790	leucine-rich repeat kinase 1	protein-coding	9.5	0.0	2.5	0.0	10.0	0.0
Merged-chr10-67553004-2	chr10	67552504	67553504	+	777.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-4049.0	NM_001005419	211488.0	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120359518-2	chr11	120359018	120360018	+	777.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2016.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-44078012-4	chr14	44077493	44078493	+	777.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-24661.0	NM_007895	13587.0	Mm.327386	NM_007895	ENSMUSG00000072596	Ear2	EAR-13|EAR-2|ECP|ECP 2|Raf3|Rnase2	eosinophil-associated, ribonuclease A family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8754416-6	chr10	8754078	8755078	+	777.152771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 9 of 19)	intron (NM_175155, intron 9 of 19)	131492.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	10.5	9.5	12.0	2.0	4.5	7.5
Merged-chr3-54102395-4	chr3	54101870	54102870	+	777.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-53687.0	NM_001253683	22066.0	Mm.10100	NM_016984	ENSMUSG00000027748	Trpc4	CCE1|STRPC4|Trp4|Trrp4	transient receptor potential cation channel, subfamily C, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38956147-3	chr2	38955671	38956671	+	777.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172854, intron 6 of 7)	intron (NM_172854, intron 6 of 7)	24191.0	NM_172854	241327.0	Mm.103491	NM_172854	ENSMUSG00000046618	Olfml2a	4932431K08Rik|mFLJ00237	olfactomedin-like 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141070263-4	chr7	141069762	141070762	+	777.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177897, intron 14 of 19)	intron (NM_177897, intron 14 of 19)	-7967.0	NM_001162924	56460.0	Mm.350037	NM_019762	ENSMUSG00000054065	Pkp3	2310056L12Rik	plakophilin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-107437286-4	chr8	107436765	107437765	+	777.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025830, intron 1 of 23)	intron (NM_025830, intron 1 of 23)	867.0	NM_025830	66894.0	Mm.390058	NM_025830	ENSMUSG00000031930	Wwp2	1300010O06Rik|AA690238|AIP2|AW554328	WW domain containing E3 ubiquitin protein ligase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173437736-3	chr1	173437233	173438233	+	777.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 2 of 8)	MIRb|SINE|MIR	17129.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	3.0	8.0	9.5	1.5	2.5	7.0
Merged-chr2-170451092-3	chr2	170450584	170451584	+	777.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23239.0	NM_029815	76960.0	Mm.240850	NM_029815	ENSMUSG00000013523	Bcas1	2210416M21Rik|9030223A09Rik|AI841227|NABC1	breast carcinoma amplified sequence 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147523020-2	chr4	147522520	147523520	+	777.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR18A_MM|LTR|ERVK	-30257.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121687624-2	chr11	121687124	121688124	+	777.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14473.0	NM_178664	210004.0	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69918678-2	chr11	69918178	69919178	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166589, intron 3 of 6)	intron (NM_001166589, intron 3 of 6)	1952.0	NM_001166590	276770.0	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-9574111-2	chr1	9573611	9574611	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357376, intron 12 of 12)	intron (NM_001357376, intron 12 of 12)	26163.0	NM_001357376	76187.0	Mm.28514	NM_175236	ENSMUSG00000025911	Adhfe1	6330565B14Rik|AI043035|Adh8|HOT	alcohol dehydrogenase, iron containing, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115202531-4	chr11	115202046	115203046	+	777.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033393, intron 6 of 9)	intron (NM_001033393, intron 6 of 9)	15059.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr17-35175978-2	chr17	35175478	35176478	+	777.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361501)	promoter-TSS (NM_001361501)	74.0	NM_019467	11629.0	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34711241-2	chr1	34710741	34711741	+	777.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75031.0	NR_033627	241051.0	Mm.282827	NR_033627		AA619741	-	PHD finger protein 19 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30711062-2	chr2	30710562	30711562	+	777.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10148.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-13362214-2	chr15	13361714	13362714	+	777.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-188539.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-137408942-2	chr6	137408442	137409442	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 12 of 26)	PB1D10|SINE|Alu	-1779.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132212309-2	chr1	132211809	132212809	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033250, intron 1 of 3)	intron (NM_001033250, intron 1 of 3)	-14005.0	NM_001311103	213409.0	Mm.426321	NM_001033250	ENSMUSG00000079330	Lemd1	4930540I23Rik|6430514M23Rik|AI428128|LEMP-1	LEM domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59785809-2	chr15	59785309	59786309	+	777.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9150.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-123005879-2	chr6	123005379	123006379	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005860, intron 3 of 5)	Lx5c|LINE|L1	15512.0	NM_001005860	474145.0	Mm.263483	NM_001005860	ENSMUSG00000059639	Clec4a4	Dcir2	C-type lectin domain family 4, member a4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-53051652-2	chr2	53051152	53052152	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 5 of 26)	intron (NM_172409, intron 5 of 26)	139535.0	NM_018785	56194.0	Mm.257474	NM_018785	ENSMUSG00000061136	Prpf40a	2810012K09Rik|FBP-11|FBP11|Fnbp11|Fnbp3	pre-mRNA processing factor 40A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22070151-2	chr9	22069651	22070651	+	777.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040406)	promoter-TSS (NR_040406)	-851.0	NR_040406	100503652.0	Mm.439941	NR_040406	ENSMUSG00000096981	Gm16845	-	predicted gene, 16845	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82567450-2	chr18	82566950	82567950	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025251, intron 2 of 6)	intron (NM_001025251, intron 2 of 6)	12942.0	NM_001025254	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-11921114-2	chr6	11920614	11921614	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362123, intron 1 of 15)	MLT1C|LTR|ERVL-MaLR	-4767.0	NM_001362122	75725.0	Mm.212411	NM_029404	ENSMUSG00000029629	Phf14	1110001C23Rik|4932409F11Rik|5730446A07Rik|AA623952|AV297001|mKIAA0783	PHD finger protein 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6717929-2	chr2	6717429	6718429	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	3733.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98199547-2	chr11	98199047	98200047	+	777.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-3758.0	NM_001109628	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-64979482-2	chr11	64978982	64979982	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023479, intron 1 of 24)	intron (NM_023479, intron 1 of 24)	447.0	NM_023479	68626.0	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	0.0	10.0	16.0	5.0	16.5	12.5
Merged-chr16-97993707-2	chr16	97993207	97994207	+	777.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3608.0	NM_001362093	245305.0	Mm.148033	NM_001362093		B230307C23Rik	8030444G23Rik|EG245305	RIKEN cDNA B230307C23 gene	protein-coding	0.0	4.5	0.0	0.0	0.0	1.0
Merged-chr16-55829240-2	chr16	55828740	55829740	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030612, intron 2 of 13)	intron (NM_030612, intron 2 of 13)	-7102.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100655692-1	chr5	100655192	100656192	+	777.0	f1_c57bl6.idr	intron (NM_027978, intron 6 of 6)	intron (NM_027978, intron 6 of 6)	18564.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	3.5	7.5	6.5	4.0	40.0	8.0
Merged-chr18-75002601-2	chr18	75002032	75003032	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002239, intron 5 of 6)	intron (NM_001002239, intron 5 of 6)	1464.0	NR_028552	100217457.0		NR_028552	ENSMUSG00000064871	Snord58b	MBII-199	small nucleolar RNA, C/D box 58B	snoRNA	3.0	2.5	14.5	20.5	7.5	15.0
Merged-chr5-24576126-2	chr5	24575626	24576626	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359205, intron 2 of 13)	intron (NM_001359205, intron 2 of 13)	1220.0	NM_001359205	27407.0	Mm.21629	NM_013853	ENSMUSG00000028953	Abcf2	0710005O05Rik|Drr3|E430001O06	ATP-binding cassette, sub-family F (GCN20), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27165778-2	chr7	27165278	27166278	+	777.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357767)	promoter-TSS (NM_001357767)	-50.0	NM_001357767	112406.0	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-31896217-2	chr11	31895717	31896717	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290678, intron 2 of 7)	intron (NM_001290678, intron 2 of 7)	25277.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	13.0	11.5	0.5	1.0	2.0	3.0
Merged-chr4-55353210-3	chr4	55352721	55353721	+	777.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009011, intron 1 of 9)	intron (NM_009011, intron 1 of 9)	3179.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	2.0	16.5	24.0	4.0	2.5	9.5
Merged-chr18-64956286-4	chr18	64955978	64956978	+	777.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	-67049.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	3.5	14.0	14.5	20.5	10.0	7.5
Merged-chr3-88644136-2	chr3	88643636	88644636	+	777.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001198911, exon 21 of 23)	exon (NM_001198911, exon 21 of 23)	9006.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	9.0	0.0	0.0	2.0	2.0	4.0
Merged-chr15-6627352-2	chr15	6626852	6627852	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155272, intron 2 of 6)	intron (NR_155272, intron 2 of 6)	26951.0	NR_155272	102632231.0	Mm.444780	NR_155272		LOC102632231	-	uncharacterized LOC102632231	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86278326-2	chr17	86277826	86278826	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	8852.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	0.0	0.0	0.0	0.0	3.0	0.0
Merged-chr16-50306885-3	chr16	50306380	50307380	+	777.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 3 of 16)	intron (NM_027444, intron 3 of 16)	125509.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-45473666-2	chr5	45473166	45474166	+	777.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-19708.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99119957-3	chr9	99119454	99120454	+	777.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 2 of 23)	intron (NM_029094, intron 2 of 23)	20257.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-33274513-1	chr11	33274013	33275013	+	777.0	f0_balb.idr	intron (NR_110973, intron 23 of 28)	L2|LINE|L2	-70925.0	NM_019916	27140.0	Mm.25362	NM_019916	ENSMUSG00000040610	Tlx3	Hox11l2|Rnx|Tlx1l2	T cell leukemia, homeobox 3	protein-coding	0.0	0.0	0.0	1.5	0.0	0.0
Merged-chr9-107770481-1	chr9	107769981	107770981	+	777.0	f0_balb.idr	non-coding (NR_153190, exon 1 of 24)	non-coding (NR_153190, exon 1 of 24)	521.0	NM_148930	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	33.5	122.5	104.5	58.5	116.0	103.0
Merged-chr16-90356332-2	chr16	90355832	90356832	+	777.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30065.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172555854-2	chr1	172555339	172556339	+	777.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177723)	promoter-TSS (NM_177723)	-99.0	NM_177723	240916.0	Mm.71940	NM_177723	ENSMUSG00000049598	Vsig8	A030011M19|EG240916	V-set and immunoglobulin domain containing 8	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr11-98958474-2	chr11	98957974	98958974	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009024, intron 2 of 8)	intron (NM_009024, intron 2 of 8)	-1997.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128409257-2	chr10	128408733	128409733	+	777.0	f0_c57.idr|f1_balb.idr	promoter-TSS (NM_001358973)	promoter-TSS (NM_001358973)	-53.0	NM_001358973	69917.0	Mm.46614	NM_027257	ENSMUSG00000025374	Nabp2	2610036N15Rik|Obfc2b|SSB1	nucleic acid binding protein 2	protein-coding	1.5	0.0	0.0	0.0	2.5	0.0
Merged-chr9-21506065-2	chr9	21505565	21506565	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 19 of 19)	RSINE1|SINE|B4	3829.0	NM_001324510	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84779388-2	chr2	84778888	84779888	+	777.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3959.0	NM_009776	12258.0	Mm.38888	NM_009776	ENSMUSG00000023224	Serping1	C1INH|C1nh	serine (or cysteine) peptidase inhibitor, clade G, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-136310992-1	chr3	136310492	136311492	+	777.0	f1_c57bl6.idr	intron (NM_001033350, intron 1 of 16)	intron (NM_001033350, intron 1 of 16)	15074.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	7.0	12.0	18.5	17.0	18.0	8.5
Merged-chr18-24047690-3	chr18	24047211	24048211	+	777.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26898.0	NM_021559	59057.0	Mm.417427	NM_021559	ENSMUSG00000051469	Zfp24	3526401F17Rik|5033419P20Rik|AI480505|AI642085|AL024422|KOX17|ZF-12|Zfp191|Znf24	zinc finger protein 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128031583-2	chr10	128031083	128032083	+	777.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-3763.0	NM_013608	17938.0	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59259322-2	chr4	59258822	59259822	+	777.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105031)	promoter-TSS (NR_105031)	-729.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	9.5	3.0	17.0	0.0	2.0	5.0
Merged-chr3-60586890-2	chr3	60586390	60587390	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	85711.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	5.0	14.5	4.0	7.5	10.0	3.5
Merged-chr14-43923502-2	chr14	43923002	43924002	+	777.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053112)	promoter-TSS (NM_053112)	-134.0	NM_053112	93725.0	Mm.429087	NM_053112	ENSMUSG00000090166	Ear10	Raf2	eosinophil-associated, ribonuclease A family, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-68684866-1	chr16	68684366	68685366	+	777.0	f1_c57bl6.idr	Intergenic	Intergenic	-1063958.0	NM_178721	239857.0	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0.0	0.0	0.5	4.0	0.0	0.0
Merged-chr2-27702563-3	chr2	27702070	27703070	+	777.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-6722.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-62774502-2	chr1	62774002	62775002	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 12 of 16)	intron (NM_001077404, intron 12 of 16)	20230.0	NR_040601	74992.0	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32275216-4	chr16	32274720	32275720	+	776.99585	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_183283)	TTS (NM_183283)	-2241.0	NM_027355	70238.0	Mm.228263	NM_027355	ENSMUSG00000014074	Rnf168	3110001H15Rik	ring finger protein 168	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91508228-4	chr2	91507677	91508677	+	776.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 36 of 37)	MLT1F2|LTR|ERVL-MaLR	-18585.0	NM_001165989	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	13.5	42.5	26.5	23.5	22.0	17.0
Merged-chr6-51567824-4	chr6	51567322	51568322	+	776.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361577, intron 2 of 6)	intron (NM_001361577, intron 2 of 6)	22529.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.0	0.0	1.5	4.0	2.0	0.0
Merged-chr9-115863035-3	chr9	115862548	115863548	+	776.922241	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-46407.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	0.5	2.0	0.5	1.5	0.5	0.0
Merged-chr9-63123907-2	chr9	63123407	63124407	+	776.916687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23073.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92437323-2	chr5	92436823	92437823	+	776.916687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-2124.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85493847-2	chr12	85493347	85494347	+	776.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A2|LTR|ERVK	19957.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45494220-3	chr4	45493727	45494727	+	776.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	36601.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-80038671-4	chr2	80038163	80039163	+	776.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355142, exon 1 of 15)	5' UTR (NM_001355142, exon 1 of 15)	239.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.0	2.0	1.5	0.0	7.0	0.0
Merged-chr5-134551448-4	chr5	134550910	134551910	+	776.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039162, intron 1 of 15)	intron (NM_001039162, intron 1 of 15)	1024.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-177478775-3	chr1	177478281	177479281	+	776.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	32960.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-86916006-2	chr10	86915506	86916506	+	776.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 31 of 68)	MTC|LTR|ERVL-MaLR	91936.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-167618547-3	chr1	167618035	167619035	+	776.833374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159731, intron 1 of 8)	intron (NM_001159731, intron 1 of 8)	270.0	NM_001159731	20183.0	Mm.3475	NM_009107	ENSMUSG00000015843	Rxrg	Nr2b3	retinoid X receptor gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148342541-2	chr5	148342041	148343041	+	776.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007513, intron 6 of 12)	intron (NM_007513, intron 6 of 12)	50274.0	NM_001301424	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84970446-2	chr8	84969951	84970951	+	776.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_011563, exon 3 of 6)	exon (NM_011563, exon 3 of 6)	829.0	NM_011563	21672.0	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	11.5	45.5	32.0	10.5	12.0	15.5
Merged-chr14-72691536-3	chr14	72691044	72692044	+	776.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 1 of 25)	MLT1A|LTR|ERVL-MaLR	18459.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr19-11093501-4	chr19	11093006	11094006	+	776.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12403.0	NM_022430	64381.0	Mm.34460	NM_022430	ENSMUSG00000024730	Ms4a8a	2010004L09Rik|AI481240|CD20L5|Ms4a8	membrane-spanning 4-domains, subfamily A, member 8A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89478858-2	chr15	89478358	89479358	+	776.833313	f1_balb.idr|f1_c57bl6.idr	intron (NR_077233, intron 4 of 4)	intron (NR_077233, intron 4 of 4)	-1434.0	NM_009713	11883.0	Mm.620	NM_009713	ENSMUSG00000022620	Arsa	AS-A|ASA|AW212749|As-2|As2|TISP73	arylsulfatase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114618928-2	chr5	114618428	114619428	+	776.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39493.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97782901-4	chr15	97782393	97783393	+	776.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1472.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8740350-5	chr10	8739794	8740794	+	776.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175155, exon 15 of 20)	exon (NM_175155, exon 15 of 20)	145776.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	1.5	0.0	2.0	1.0	0.0	0.0
Merged-chr15-66866148-3	chr15	66865663	66866663	+	776.788879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25230.0	NM_018865	22402.0	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	19.0	34.0	19.0	23.0	18.0	16.5
Merged-chr9-100377888-3	chr9	100377371	100378371	+	776.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108602.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	0.5	0.0	2.0	1.5	0.0	4.5
Merged-chr10-78455605-3	chr10	78455095	78456095	+	776.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172134, intron 1 of 10)	intron (NM_172134, intron 1 of 10)	9353.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155637522-3	chr2	155637046	155638046	+	776.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019828, intron 16 of 18)	intron (NM_019828, intron 16 of 18)	14666.0	NR_030757	735275.0		NR_030757	ENSMUSG00000076312	Mir499	Mirn499|mir-499|mmu-mir-499	microRNA 499	ncRNA	5.0	6.5	2.0	0.0	3.5	11.5
Merged-chr4-58439829-4	chr4	58439339	58440339	+	776.770813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172989, intron 3 of 3)	ORR1D-int|LTR|ERVL-MaLR	1259.0	NR_037278	100526502.0		NR_037278	ENSMUSG00000093293	Mir3095	mir-3095|mmu-mir-3095	microRNA 3095	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70862591-2	chr8	70862091	70863091	+	776.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5583.0	NM_032397	84036.0	Mm.32074	NM_032397	ENSMUSG00000002908	Kcnn1	AI854248|KCa2.1|SK1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr19-4265962-2	chr19	4265462	4266462	+	776.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001356620, exon 7 of 14)	exon (NM_001356620, exon 7 of 14)	-2084.0	NR_105951	102465595.0		NR_105951	ENSMUSG00000099290	Mir6985	Gm27719|mmu-mir-6985	microRNA 6985	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64343423-2	chr5	64342940	64343940	+	776.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 17 of 18)	intron (NM_001289514, intron 17 of 18)	113083.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	89.0	193.5	146.5	54.5	56.0	61.0
Merged-chr9-110625010-4	chr9	110624493	110625493	+	776.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026012)	promoter-TSS (NM_026012)	-600.0	NM_026012	67169.0	Mm.46680	NM_026012	ENSMUSG00000032491	Nradd	2610311B09Rik|BB104149|NRDD|NRH2|PLAIDD	neurotrophin receptor associated death domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6948475-2	chr19	6947975	6948975	+	776.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285453, intron 2 of 3)	intron (NM_001285453, intron 2 of 3)	5913.0	NM_001285453	12015.0	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80781729-3	chr7	80781271	80782271	+	776.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	21560.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	81.5	185.5	74.0	104.5	163.5	117.5
Merged-chr3-53027540-3	chr3	53027041	53028041	+	776.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10318.0	NM_026225	67542.0	Mm.249548	NM_026225	ENSMUSG00000027742	Cog6	4933405E16Rik|AU018618|mKIAA1134	component of oligomeric golgi complex 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-64491222-1	chr11	64490722	64491722	+	776.666687	f0_balb.idr	intron (NM_178870, intron 1 of 1)	intron (NM_178870, intron 1 of 1)	-54548.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	0.0	0.0	7.0	2.5	13.0	8.5
Merged-chr1-143919106-3	chr1	143918618	143919618	+	776.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85031.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114858844-3	chr11	114858346	114859346	+	776.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_147217, intron 1 of 3)	intron (NM_147217, intron 1 of 3)	6816.0	NM_147217	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-52953002-3	chr1	52952435	52953435	+	776.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144953)	promoter-TSS (NM_144953)	-95.0	NM_144953	67080.0	Mm.236287	NM_144953	ENSMUSG00000043629	1700019D03Rik	2410136C24Rik|AA410151|smAKAP	RIKEN cDNA 1700019D03 gene	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr7-112252358-1	chr7	112251858	112252858	+	776.666687	f0_balb.idr	intron (NM_001193305, intron 2 of 25)	intron (NM_001193305, intron 2 of 25)	26522.0	NM_001193305	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	0.0	5.0	1.5	4.5	1.0	3.5
Merged-chr18-4364229-3	chr18	4363690	4364690	+	776.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040328, intron 2 of 3)	intron (NR_040328, intron 2 of 3)	10643.0	NR_040328	73915.0	Mm.482777	NR_040328		4833419F23Rik	-	RIKEN cDNA 4833419F23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32959529-2	chr2	32959029	32960029	+	776.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_199302, exon 2 of 25)	exon (NM_199302, exon 2 of 25)	1726.0	NM_199302	227738.0	Mm.248037	NM_199302	ENSMUSG00000026792	Lrsam1	-	leucine rich repeat and sterile alpha motif containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54612058-4	chr18	54611488	54612488	+	776.625	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045400, intron 1 of 2)	intron (NR_045400, intron 1 of 2)	244.0	NR_045400	328957.0	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA	3.0	1.0	0.0	3.0	1.0	0.0
Merged-chr11-70020057-2	chr11	70019557	70020557	+	776.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_007864, intron 1 of 19)	intron (NM_007864, intron 1 of 19)	1452.0	NM_007864	13385.0	Mm.27256	NM_007864	ENSMUSG00000020886	Dlg4	Dlgh4|PSD-95|PSD95|SAP90|SAP90A	discs large MAGUK scaffold protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85897754-4	chr1	85897187	85898187	+	776.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022417, intron 1 of 5)	intron (NM_022417, intron 1 of 5)	3177.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-84750607-3	chr6	84750111	84751111	+	776.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 19 of 21)	intron (NM_177077, intron 19 of 21)	-156703.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139745979-3	chr5	139745409	139746409	+	776.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-9576.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	0.5	0.0	0.5	1.5	0.0	0.0
Merged-chr11-116406321-3	chr11	116405807	116406807	+	776.5888669999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027258, intron 1 of 18)	L1MB7|LINE|L1	6725.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161496415-5	chr1	161495958	161496958	+	776.58667	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183391, intron 1 of 2)	intron (NM_183391, intron 1 of 2)	1801.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	15.0	14.0	13.0	5.5	6.0	11.0
Merged-chr6-134828376-3	chr6	134827836	134828836	+	776.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1863.0	NM_177687	232430.0	Mm.267010	NM_177687	ENSMUSG00000032652	Crebl2	AI046348|B230205M03	cAMP responsive element binding protein-like 2	protein-coding	0.0	1.5	2.0	1.5	0.0	0.0
Merged-chr7-15930124-4	chr7	15929629	15930629	+	776.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7758.0	NM_009156	20364.0	Mm.42829	NM_009156	ENSMUSG00000041571	Selenow	Sepw1|selW	selenoprotein W	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr11-4294681-3	chr11	4294192	4295192	+	776.577759	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27896.0	NM_001039537	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96487994-6	chr3	96487507	96488507	+	776.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B2|LTR|ERVK	-35701.0	NM_001256181	329716.0	Mm.275223	NM_183223	ENSMUSG00000046317	BC107364	D730018G16	cDNA sequence BC107364	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-62844214-2	chr12	62843714	62844714	+	776.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	156427.0	NR_131949	73309.0	Mm.276558	NR_131949		Spanxn4	1700047L15Rik	SPANX family, member N4	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87474025-2	chr11	87473525	87474525	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	(CAAAA)n|Simple_repeat|Simple_repeat	46434.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.5	0.0	0.0	0.0	0.0	0.5
Merged-chr17-37027804-2	chr17	37027304	37028304	+	776.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4406.0	NM_010814	17441.0	Mm.210857	NM_010814	ENSMUSG00000076439	Mog	B230317G11Rik	myelin oligodendrocyte glycoprotein	protein-coding	4.0	6.5	1.5	4.0	13.5	5.0
Merged-chr5-35758959-2	chr5	35758459	35759459	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177678, intron 1 of 19)	intron (NM_177678, intron 1 of 19)	1079.0	NM_001177698	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106351173-3	chr1	106350664	106351664	+	776.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 10 of 16)	MTE2a|LTR|ERVL-MaLR	179295.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46404292-2	chr18	46403792	46404792	+	776.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61524.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83786885-2	chr6	83786385	83787385	+	776.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7385.0	NR_136916	665004.0		NR_136916		Gm7443	EG665004	ribosomal protein L27 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55213112-2	chr13	55212612	55213612	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008739, intron 1 of 22)	intron (NM_008739, intron 1 of 22)	3330.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38542183-2	chr18	38541683	38542683	+	776.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59085.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79373988-2	chr8	79373488	79374488	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	25480.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95802498-2	chr15	95801998	95802998	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	11655.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81184013-2	chr10	81183513	81184513	+	776.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007828)	promoter-TSS (NM_007828)	95.0	NM_007828	13144.0	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83217803-2	chr17	83217303	83218303	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134117, intron 1 of 6)	intron (NM_134117, intron 1 of 6)	2520.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34849765-2	chr17	34849269	34850269	+	776.5	f0_c57.idr|f1_balb.idr	promoter-TSS (NM_001045864)	promoter-TSS (NM_001045864)	435.0	NM_021337	108077.0	Mm.18845	NM_021337	ENSMUSG00000040356	Skiv2l	4930534J06Rik|AW214248|Ddx13|SKI|Ski2w	superkiller viralicidic activity 2-like (S. cerevisiae)	protein-coding	9.0	10.5	11.0	10.5	17.0	8.5
Merged-chr18-36720811-2	chr18	36720267	36721267	+	776.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAAA)n|Simple_repeat|Simple_repeat	6048.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	15.5	9.5	4.5	4.5	11.5	22.0
Merged-chr5-103623767-2	chr5	103623267	103624267	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029415, intron 1 of 5)	intron (NM_029415, intron 1 of 5)	5636.0	NM_029415	75750.0	Mm.7446	NM_029415	ENSMUSG00000029321	Slc10a6	8430417G17Rik|C78479|Soat	solute carrier family 10 (sodium/bile acid cotransporter family), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64155858-2	chr13	64155341	64156341	+	776.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID2|SINE|ID	-2642.0	NM_175494	238673.0	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	0.0	0.0	0.0	0.0	1.5	4.0
Merged-chr19-10202922-2	chr19	10202422	10203422	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271615, intron 1 of 1)	ID4_|SINE|ID	1021.0	NM_001271615	14156.0	Mm.2952	NM_007999	ENSMUSG00000024742	Fen1	AW538437|FEN-1	flap structure specific endonuclease 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74909707-2	chr15	74909207	74910207	+	776.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28003.0	NM_025929	67038.0	Mm.154566	NM_025929	ENSMUSG00000063522	2010109I03Rik	Ly6m	RIKEN cDNA 2010109I03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103468295-2	chr14	103467795	103468795	+	776.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45046.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-17131269-1	chr19	17130769	17131769	+	776.5	f0_balb.idr	intron (NM_181348, intron 9 of 19)	intron (NM_181348, intron 9 of 19)	175151.0	NM_181348	353211.0	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	2.5	22.5	6.5	4.0	8.0	19.5
Merged-chr12-83903983-2	chr12	83903483	83904483	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_073564, intron 1 of 12)	intron (NR_073564, intron 1 of 12)	17951.0	NR_073563	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27717825-2	chr2	27717325	27718325	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	7242.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-127009901-2	chr1	127009401	127010401	+	776.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-179269.0	NM_001081756	210356.0	Mm.377234	NM_172484	ENSMUSG00000049690	Nckap5	8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5	NCK-associated protein 5	protein-coding	0.0	0.0	0.0	0.0	5.0	0.0
Merged-chr2-142163654-2	chr2	142163154	142164154	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 8 of 18)	intron (NM_001013802, intron 8 of 18)	737810.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-37460268-2	chr8	37459768	37460768	+	776.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-436030.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	0.5	0.0	0.0	0.0	1.5	1.0
Merged-chr19-41343319-2	chr19	41342819	41343819	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	41751.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136148128-2	chr1	136147628	136148628	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 5 of 34)	intron (NM_001039472, intron 5 of 34)	16738.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65823834-2	chr5	65823334	65824334	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024917, intron 18 of 19)	intron (NM_001024917, intron 18 of 19)	-39735.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	6.0	4.5	3.0	0.0	2.5	1.5
Merged-chr11-118174524-2	chr11	118174024	118175024	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 10 of 12)	B2_Mm2|SINE|B2	38218.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71313270-2	chr8	71312824	71313824	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	PB1D7|SINE|Alu	40610.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	4.5	7.0	4.0	6.5	1.0	8.5
Merged-chr7-73522782-2	chr7	73522282	73523282	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	18964.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108697734-2	chr8	108697234	108698234	+	776.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16910.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr13-12880444-2	chr13	12879944	12880944	+	776.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80365.0	NM_011118	18812.0	Mm.457984	NM_011118	ENSMUSG00000056457	Prl2c3	Ghd1|MRP-2|MRP-3|Mrpplf3|PLF-2|PLF-3|Plf2|Prl2c4|mrp/plf3	prolactin family 2, subfamily c, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110711895-2	chr12	110711395	110712395	+	776.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-15500.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35935937-3	chr16	35935443	35936443	+	776.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013371, intron 2 of 4)	RMER20C_Mm|LTR|ERVK	-2527.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64894969-3	chr17	64894478	64895478	+	776.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58907.0	NM_030031	78057.0	Mm.109380	NM_030031	ENSMUSG00000024088	4930583I09Rik	-	RIKEN cDNA 4930583I09 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150878897-3	chr2	150878372	150879372	+	776.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 1 of 12)	intron (NR_151505, intron 1 of 12)	25859.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-51073295-3	chr2	51072795	51073795	+	776.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75816.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-20967382-3	chr2	20966903	20967903	+	776.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081364, exon 1 of 24)	exon (NM_001081364, exon 1 of 24)	318.0	NM_001081364	71435.0	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-73800057-3	chr18	73799565	73800565	+	776.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145494, intron 3 of 15)	intron (NM_145494, intron 3 of 15)	15327.0	NM_145494	107029.0	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	3.0	6.0	4.0	3.0	6.0	4.0
Merged-chr11-97098831-3	chr11	97098340	97099340	+	776.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019507, exon 6 of 6)	exon (NM_019507, exon 6 of 6)	16491.0	NM_019507	57765.0	Mm.94519	NM_019507	ENSMUSG00000001444	Tbx21	TBT1|Tbet|Tblym	T-box 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91512572-4	chr16	91512080	91513080	+	776.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14964.0	NR_105786	102465190.0		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	2.0	8.5	9.0	4.5	19.5	17.0
Merged-chr4-139382140-3	chr4	139381655	139382655	+	776.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160319, intron 1 of 105)	B3A|SINE|B2	1496.0	NM_001160319	69116.0	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	59.5	75.5	59.5	27.0	95.0	93.5
Merged-chr6-51123188-3	chr6	51122684	51123684	+	776.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146726.0	NR_029719	387166.0		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	5.0	6.5	3.0	6.0	4.5	4.0
Merged-chr4-150138989-2	chr4	150138489	150139489	+	776.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_019741, intron 7 of 13)	intron (NM_019741, intron 7 of 13)	-9983.0	NM_001085529	435818.0	Mm.359648	NM_001085529	ENSMUSG00000062064	Slc2a7	-	solute carrier family 2 (facilitated glucose transporter), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81314497-2	chr7	81313997	81314997	+	776.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 11 of 21)	intron (NM_008803, intron 11 of 21)	30737.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-19919046-2	chr4	19918544	19919544	+	776.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175406, intron 1 of 7)	intron (NM_175406, intron 1 of 7)	3522.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	5.0	0.5	0.0	6.5	0.5	0.5
Merged-chr5-112281302-2	chr5	112280777	112281777	+	776.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	4586.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	4.5	24.0	21.5	21.5	25.5	15.0
Merged-chr6-87481465-2	chr6	87480965	87481965	+	776.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 4 of 10)	ORR1A3|LTR|ERVL-MaLR	14862.0	NR_104483	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.0	0.5	8.0	10.0	7.0	2.5
Merged-chr11-117155730-2	chr11	117155230	117156230	+	776.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 14 of 16)	intron (NM_001166507, intron 14 of 16)	40558.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-150259355-4	chr5	150258874	150259874	+	776.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172887)	promoter-TSS (NM_172887)	-556.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	2.0	2.5	1.0	0.0	0.0	2.5
Merged-chr2-60818305-3	chr2	60817810	60818810	+	776.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	63128.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88361485-3	chr8	88361029	88362029	+	776.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr	exon (NM_012047, exon 2 of 17)	exon (NM_012047, exon 2 of 17)	662.0	NM_012047	26992.0	Mm.5400	NM_012047	ENSMUSG00000031660	Brd7	BP75|CELTIX1|Ptpn13ip	bromodomain containing 7	protein-coding	46.5	91.5	68.5	15.5	50.0	40.0
Merged-chr19-3451393-3	chr19	3450878	3451878	+	776.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36834.0	NM_010253	14419.0	Mm.4655	NM_010253	ENSMUSG00000024907	Gal	Galn	galanin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104683174-3	chr3	104682689	104683689	+	776.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44525.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44779600-2	chr16	44779100	44780100	+	776.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	13864.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84654181-2	chr12	84653681	84654681	+	776.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11285.0	NM_001033776	432677.0	Mm.311913	NM_001033776	ENSMUSG00000071235	Vrtn	7420416P09Rik	vertebrae development associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-51476260-2	chr1	51475760	51476760	+	776.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_028696, intron 2 of 5)	intron (NM_028696, intron 2 of 5)	2139.0	NM_001310548	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	1.0	2.5	0.0	1.5	4.5	0.5
Merged-chr9-21950458-3	chr9	21949947	21950947	+	776.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5306.0	NM_025870	66962.0	Mm.46647	NM_025870	ENSMUSG00000051238	Swsap1	2310047B19Rik	SWIM type zinc finger 7 associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-109212294-3	chr13	109211809	109212809	+	776.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-112435.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-127781067-3	chr1	127780566	127781566	+	776.311096	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028399, intron 2 of 8)	MIRb|SINE|MIR	6902.0	NM_028399	72949.0	Mm.268672	NM_028399	ENSMUSG00000026349	Ccnt2	2900041I18Rik|C81304|CycT2|CycT2a|CycT2b	cyclin T2	protein-coding	1.0	3.0	4.5	1.0	3.0	4.0
Merged-chr16-23232948-2	chr16	23232448	23233448	+	776.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 1 of 7)	intron (NM_001252505, intron 1 of 7)	6927.0	NM_001252505	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3630990-4	chr2	3630482	3631482	+	776.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82476.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80204731-4	chr18	80204242	80205242	+	776.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-2056.0	NM_001038608	27366.0	Mm.172411	NM_025299	ENSMUSG00000057130	Txnl4a	D18Wsu98e|Dim1|Txnl4|U5-15kD|U5-15kDa	thioredoxin-like 4A	protein-coding	0.0	0.5	2.0	0.0	0.0	1.0
Merged-chr2-9877472-3	chr2	9876977	9877977	+	776.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008091, exon 2 of 6)	exon (NM_008091, exon 2 of 6)	1123.0	NM_001355110	14462.0	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51984919-3	chr14	51984495	51985495	+	776.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145921, intron 1 of 23)	CpG	162.0	NM_198249	268739.0	Mm.9239	NM_198249	ENSMUSG00000004562	Arhgef40	E130112L23Rik|Gm669|Solo	Rho guanine nucleotide exchange factor (GEF) 40	protein-coding	4.5	6.5	0.0	0.0	4.5	0.5
Merged-chr1-149892487-3	chr1	149891995	149892995	+	776.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 5 of 17)	intron (NM_008869, intron 5 of 17)	29944.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136224926-3	chr4	136224439	136225439	+	776.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008232, intron 1 of 24)	intron (NM_001008232, intron 1 of 24)	18574.0	NM_001355698	230837.0	Mm.77788	NM_001008232	ENSMUSG00000036995	Asap3	9430088F20Rik|Ddefl1|Gm140|UPLC1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 3	protein-coding	3.5	3.5	0.5	2.0	4.0	0.5
Merged-chr15-88489498-2	chr15	88488998	88489998	+	776.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-110804.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	19.5	14.0	12.0	19.5	12.5	10.0
Merged-chr5-137289241-2	chr5	137288744	137289744	+	776.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009599, intron 1 of 4)	CpG	990.0	NM_001290010	11423.0	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	0.0	0.0	0.5	1.0	0.0	1.5
Merged-chr13-8867558-4	chr13	8867064	8868064	+	776.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039388, intron 1 of 13)	URR1B|DNA|hAT-Charlie	3480.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50897592-4	chr14	50897123	50898123	+	776.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4368.0	NM_001166651	546611.0	Mm.390692	NM_001166651	ENSMUSG00000090799	Klhl33	EG546611	kelch-like 33	protein-coding	5.5	33.0	28.5	7.5	36.5	23.0
Merged-chr5-139251394-2	chr5	139250871	139251871	+	776.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026269)	promoter-TSS (NM_026269)	-953.0	NM_001359238	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128235553-2	chr7	128235053	128236053	+	776.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177001, exon 1 of 1)	3' UTR (NM_177001, exon 1 of 1)	-1804.0	NM_146205	233912.0	Mm.475117	NM_146205	ENSMUSG00000042178	Armc5	AW049683|BC032200	armadillo repeat containing 5	protein-coding	0.0	4.0	8.0	0.0	4.0	0.5
Merged-chr17-35015651-2	chr17	35015151	35016151	+	776.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347347)	promoter-TSS (NM_001347347)	-928.0	NM_138582	27762.0	Mm.56895	NM_138582	ENSMUSG00000007030	Vwa7	C6orf27|D17H6S56E-3|G7c|NG37	von Willebrand factor A domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4383488-2	chr16	4382988	4383988	+	776.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009624, intron 2 of 10)	intron (NM_009624, intron 2 of 10)	37010.0	NM_001291910	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114655824-2	chr11	114655324	114656324	+	776.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12719.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-83400930-3	chr9	83400410	83401410	+	776.244446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029434, intron 4 of 7)	GA-rich|Low_complexity|Low_complexity	-30637.0	NR_102437	100039186.0	Mm.212721	NR_102437	ENSMUSG00000099718	Gm2087	-	predicted gene 2087	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35199703-5	chr2	35199218	35200218	+	776.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026697, intron 1 of 7)	intron (NM_026697, intron 1 of 7)	1402.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	1.5	19.5	8.5	9.0	30.5	14.5
Merged-chr18-25621499-3	chr18	25621005	25622005	+	776.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362322, intron 2 of 12)	intron (NM_001362322, intron 2 of 12)	58243.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127323068-3	chr3	127322574	127323574	+	776.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	85984.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	21.5	9.0	1.0	11.0	4.0	0.0
Merged-chr12-77000270-3	chr12	76999767	77000767	+	776.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38019.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82878061-3	chr18	82877558	82878558	+	776.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22161.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121409175-3	chr14	121408672	121409672	+	776.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29942.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	16.5	22.0	10.5	3.5	2.0	10.0
Merged-chr6-17286525-3	chr6	17286054	17287054	+	776.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016900, intron 2 of 2)	intron (NM_016900, intron 2 of 2)	5369.0	NM_016900	12390.0	Mm.396075	NM_016900	ENSMUSG00000000058	Cav2	AI447843	caveolin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-44963212-3	chr2	44962700	44963700	+	776.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	59977.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20692504-2	chr16	20692004	20693004	+	776.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001304432, exon 32 of 32)	3' UTR (NM_001304432, exon 32 of 32)	-2553.0	NM_133778	78408.0	Mm.196512	NM_133778	ENSMUSG00000050821	Fam131a	2900046G09Rik	family with sequence similarity 131, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-15759447-2	chr6	15758947	15759947	+	776.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	38786.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60696342-2	chr13	60695842	60696842	+	776.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001285917, exon 3 of 27)	exon (NM_001285917, exon 3 of 27)	90022.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	1.5	10.5	6.0	6.5	9.5	3.0
Merged-chr1-195003105-4	chr1	195002732	195003732	+	776.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14167.0	NR_015566	320977.0	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78493436-4	chr9	78492945	78493945	+	776.145813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11721.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122145044-3	chr8	122144529	122145529	+	776.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137112.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr17-26451775-3	chr17	26451289	26452289	+	776.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36824.0	NM_001081656	240055.0	Mm.133211	NM_001081656	ENSMUSG00000034413	Neurl1b	C230078M08Rik|EG240055	neuralized E3 ubiquitin protein ligase 1B	protein-coding	4.5	0.0	2.5	2.5	0.0	4.5
Merged-chr4-34797754-3	chr4	34797258	34798258	+	776.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19392.0	NM_025471	66291.0	Mm.28071	NM_025471	ENSMUSG00000028295	Smim8	1810030N24Rik|2810406B13Rik	small integral membrane protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-93362088-3	chr3	93361592	93362592	+	776.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31607.0	NM_009100	20129.0	Mm.1417	NM_009100	ENSMUSG00000041984	Rptn	-	repetin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40761625-3	chr9	40761117	40762117	+	776.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 2 of 6)	intron (NM_133733, intron 2 of 6)	-39656.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	6.5	5.5	13.0	46.0	103.5	85.0
Merged-chr11-70806092-2	chr11	70805592	70806592	+	776.083313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045526, intron 1 of 4)	L2b|LINE|L2	6469.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	8.5	41.0	28.0	2.5	25.0	20.5
Merged-chr4-3496264-3	chr4	3495783	3496783	+	776.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40807.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79592303-4	chr3	79591958	79592958	+	776.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356326, intron 1 of 10)	intron (NM_001356326, intron 1 of 10)	1121.0	NM_026352	67738.0	Mm.295252	NM_026352	ENSMUSG00000027804	Ppid	4930564J03Rik|CYP-40|Ppidl|Ppif	peptidylprolyl isomerase D (cyclophilin D)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101333905-3	chr15	101333412	101334412	+	776.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-35440.0	NR_035462	100316694.0		NR_035462	ENSMUSG00000088459	Mir1941	mmu-mir-1941	microRNA 1941	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-9882138-2	chr2	9881638	9882638	+	776.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_040511)	TTS (NR_040511)	892.0	NR_024257	381347.0	Mm.441450	NR_024257		4930412O13Rik	Gm10853	RIKEN cDNA 4930412O13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-31356211-2	chr9	31355711	31356711	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080817, intron 13 of 20)	intron (NM_001080817, intron 13 of 20)	-29981.0	NM_172766	235134.0	Mm.238146	NM_172766	ENSMUSG00000042185	Nfrkb	A530090G11Rik	nuclear factor related to kappa B binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-46737683-3	chr13	46737221	46738221	+	776.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9872.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32140306-2	chr5	32139806	32140806	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008037, intron 1 of 3)	intron (NM_008037, intron 1 of 3)	3834.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	7.5	55.5	20.5	8.5	66.0	25.0
Merged-chr5-64797777-2	chr5	64797277	64798277	+	776.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5746.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	1.0	0.0	1.5	1.5	0.0	3.0
Merged-chr6-29239433-2	chr6	29238933	29239933	+	776.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23069.0	NM_001302934	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123079161-2	chr5	123078661	123079661	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039723, intron 1 of 11)	intron (NM_001039723, intron 1 of 11)	2886.0	NM_001039723	330189.0	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5571976-2	chr17	5571476	5572476	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	79376.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25600481-2	chr8	25599981	25600981	+	776.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1120.0	NM_001308481	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84919038-2	chr10	84918538	84919538	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013441, intron 1 of 8)	intron (NM_001013441, intron 1 of 8)	1425.0	NM_183172	237422.0	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	0.0	0.0	0.0	8.5	0.0	1.5
Merged-chr9-58228795-2	chr9	58228295	58229295	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008884, intron 6 of 7)	intron (NM_008884, intron 6 of 7)	7645.0	NR_105806	102466639.0		NR_105806	ENSMUSG00000098886	Mir6385	Gm28021|mmu-mir-6385	microRNA 6385	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101722358-2	chr4	101721858	101722858	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146146, intron 1 of 18)	URR1A|DNA|hAT-Charlie	4951.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-70318809-2	chr10	70318309	70319309	+	776.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73533.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28369527-2	chr7	28369027	28370027	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138752, intron 4 of 18)	B4A|SINE|B4	3135.0	NM_138752	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-16007647-2	chr3	16007147	16008147	+	776.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-1315.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	0.0	9.0	3.5	2.0	15.5	2.0
Merged-chr12-86793590-2	chr12	86793090	86794090	+	776.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59221.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98357561-2	chr11	98357061	98358061	+	776.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021547)	promoter-TSS (NM_021547)	722.0	NR_045477	69338.0	Mm.398308	NR_045477	ENSMUSG00000085944	1700003D09Rik	-	RIKEN cDNA 1700003D09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-69227498-2	chr17	69226998	69227998	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	49708.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36531316-2	chr1	36530816	36531816	+	776.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153502, exon 9 of 9)	3' UTR (NM_153502, exon 9 of 9)	4423.0	NM_153502	78321.0	Mm.41421	NM_153502	ENSMUSG00000067653	Ankrd23	1110058D09Rik|2310041C05Rik|AI853437|Darp|MARP3	ankyrin repeat domain 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-73003990-2	chr8	73003490	73004490	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317391, intron 7 of 15)	MTE2a|LTR|ERVL-MaLR	-12522.0	NR_039551	100628574.0		NR_039551	ENSMUSG00000093140	Mir28b	mmu-mir-28b	microRNA 28b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45945612-3	chr13	45945092	45946092	+	776.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	19399.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87460075-2	chr11	87459511	87460511	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	LTRIS_Mus|LTR|ERV1	32420.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-118759768-3	chr12	118759259	118760259	+	776.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Plat_L3|LINE|CR1	-86570.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111660510-2	chr8	111659974	111660974	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011742, intron 2 of 3)	MERVL_2A-int|LTR|ERVL	17031.0	NM_011742	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	1.5	6.5	2.0	2.0	2.0	16.5
Merged-chr9-37666294-1	chr9	37665794	37666794	+	776.0	f1_balb.idr	intron (NM_172454, intron 2 of 3)	intron (NM_172454, intron 2 of 3)	2928.0	NM_172454	208098.0	Mm.217159	NM_172454	ENSMUSG00000011118	Panx3	3230401P04|4833413G11Rik	pannexin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70565616-1	chr8	70565116	70566116	+	776.0	f0_balb.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	25941.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	0.0	3.0	0.0	6.5	6.0	3.5
Merged-chr3-10300137-2	chr3	10299637	10300637	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029310, intron 1 of 5)	(CA)n|Simple_repeat|Simple_repeat	1046.0	NM_001357159	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33982390-2	chr17	33981916	33982916	+	776.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033305, exon 1 of 1)	non-coding (NR_033305, exon 1 of 1)	924.0	NR_033305	433100.0	Mm.380381	NM_001013793		AA388235	-	expressed sequence AA388235	ncRNA	20.0	47.0	26.0	1.0	4.5	1.5
Merged-chr3-96216428-2	chr3	96215896	96216896	+	776.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A2|LTR|ERVK	-3520.0	NM_178213	621893.0		NM_178213	ENSMUSG00000063689	Hist2h2ab	EG621893|H2a-613a	histone cluster 2, H2ab	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-25550677-2	chr18	25550177	25551177	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362322, intron 2 of 12)	intron (NM_001362322, intron 2 of 12)	129071.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88672145-1	chr8	88671645	88672645	+	776.0	f1_c57bl6.idr	intron (NM_145857, intron 6 of 12)	intron (NM_145857, intron 6 of 12)	24798.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	6.5	1.5	1.0	10.0	0.0	2.0
Merged-chr4-141130218-2	chr4	141129718	141130718	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277195, intron 1 of 3)	(TTTA)n|Simple_repeat|Simple_repeat	9578.0	NR_102344	213491.0	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28006854-1	chr17	28006354	28007354	+	776.0	f1_c57bl6.idr	intron (NM_181413, intron 11 of 24)	intron (NM_181413, intron 11 of 24)	73730.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	2.5	19.0	13.0	22.0	18.0	8.0
Merged-chr5-115494818-2	chr5	115494315	115495315	+	776.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10331.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	1.0	0.0	8.5	0.0	0.0	0.0
Merged-chr13-99316020-2	chr13	99315554	99316554	+	776.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	28624.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	1.5	0.0	4.0	0.0	2.5	6.0
Merged-chr11-98947119-2	chr11	98946619	98947619	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177303, intron 1 of 8)	intron (NM_001177303, intron 1 of 8)	7408.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100433511-2	chr7	100433011	100434011	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 23 of 32)	intron (NM_001017985, intron 23 of 32)	-39480.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	23.0	79.5	34.5	34.0	51.0	34.0
Merged-chr4-53085050-2	chr4	53084550	53085550	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 13 of 49)	intron (NM_013454, intron 13 of 49)	73170.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125161002-2	chr6	125160502	125161502	+	776.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008084)	TTS (NM_008084)	4771.0	NM_008084	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-115582067-2	chr2	115581567	115582567	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207264, intron 1 of 10)	intron (NM_207264, intron 1 of 10)	351.0	NM_001145898	399568.0	Mm.134929	NM_207264	ENSMUSG00000040282	BC052040	-	cDNA sequence BC052040	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87626253-1	chr16	87625753	87626753	+	776.0	f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-72701.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	24.5	12.0	27.0	10.0	25.0	41.5
Merged-chr8-84183073-2	chr8	84182520	84183520	+	776.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4059.0	NR_029821	723819.0		NR_029821	ENSMUSG00000065483	Mir181c	Mirn181c|mir-181c	microRNA 181c	ncRNA	1.0	0.0	2.5	0.0	0.0	1.5
Merged-chr14-54655046-2	chr14	54654546	54655546	+	776.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_038053)	TTS (NR_038053)	-1345.0	NM_001085472	56215.0	Mm.297078	NM_019567	ENSMUSG00000022185	Acin1	2610036I19Rik|2610510L13Rik|Acinus|Acn|C79325|acinusL|acinusS|mKIAA0670	apoptotic chromatin condensation inducer 1	protein-coding	0.0	6.0	7.5	1.0	5.5	4.0
Merged-chr2-11492543-3	chr2	11492046	11493046	+	776.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133232, intron 3 of 14)	intron (NM_133232, intron 3 of 14)	9544.0	NM_001177754	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60749777-2	chr18	60749277	60750277	+	776.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1112.0	NM_008306	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-85974215-2	chr9	85973715	85974715	+	776.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131363.0	NM_001164792	21983.0	Mm.20864	NM_011627	ENSMUSG00000035274	Tpbg	5T4|AW495680|WAIF1	trophoblast glycoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	3.0
Merged-chr3-132648509-2	chr3	132648009	132649009	+	776.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	18318.0	NM_001270430	433653.0		NM_001270430	ENSMUSG00000091721	Gimd1	EG433653|Gm5549	GIMAP family P-loop NTPase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-19930401-3	chr11	19929921	19930921	+	776.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	B1_Mur3|SINE|Alu	5979.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	0.5	2.5	1.5	0.5	2.0	1.5
Merged-chr9-21259085-1	chr9	21258585	21259585	+	776.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-6200.0	NM_153583	235040.0	Mm.440165	NM_153583	ENSMUSG00000002820	Atg4d	9830134P12Rik|APG4-D|Apg4d|Atg4dl|Autl4	autophagy related 4D, cysteine peptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141810047-1	chr4	141809547	141810547	+	776.0	f1_c57bl6.idr	intron (NM_001277932, intron 6 of 7)	intron (NM_001277932, intron 6 of 7)	15958.0	NM_007919	13706.0	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	0.0	1.0	7.5	0.5	0.0	3.5
Merged-chr2-59954900-3	chr2	59954387	59955387	+	776.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 12 of 35)	intron (NM_001001182, intron 12 of 35)	-72281.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137114650-2	chr5	137114150	137115150	+	776.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_201373, exon 3 of 3)	exon (NM_201373, exon 3 of 3)	1557.0	NM_201373	384309.0	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.0	1.5	2.0	0.0	0.0	0.0
Merged-chr13-93899832-1	chr13	93899332	93900332	+	776.0	f0_balb.idr	intron (NM_009712, intron 6 of 7)	MLT1A1|LTR|ERVL-MaLR	109055.0	NR_049198	100885837.0		NR_049198	ENSMUSG00000093480	Mir5624	Gm25075|mir-5624|mmu-mir-5624	microRNA 5624	ncRNA	3.0	0.0	0.0	4.0	3.0	5.5
Merged-chr6-116009745-2	chr6	116009245	116010245	+	776.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14740.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40640604-1	chr19	40640104	40641104	+	776.0	f1_balb.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	-19166.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	83.0	218.5	155.5	68.5	204.0	108.5
Merged-chr4-140990480-2	chr4	140989980	140990980	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164366, intron 1 of 28)	intron (NM_001164366, intron 1 of 28)	3607.0	NM_001164366	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127551152-2	chr10	127550652	127551652	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 63 of 88)	intron (NM_008512, intron 63 of 88)	-16593.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.0	16.5	4.5	0.0	5.5	9.0
Merged-chr13-49348816-2	chr13	49348316	49349316	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039179, intron 1 of 6)	L1MC3|LINE|L1	7267.0	NM_001039180	76895.0	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	BICD cargo adaptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75577490-2	chr7	75576990	75577990	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 3 of 36)	ORR1D1-int|LTR|ERVL-MaLR	121956.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65554124-2	chr9	65553643	65554643	+	776.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153119, exon 6 of 6)	3' UTR (NM_153119, exon 6 of 6)	25944.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	12.5	28.5	25.0	18.0	39.0	37.0
Merged-chr15-102147360-2	chr15	102146860	102147860	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008344, intron 1 of 3)	B3|SINE|B2	3174.0	NM_008344	16012.0	Mm.358609	NM_008344	ENSMUSG00000023046	Igfbp6	IGFBP-6	insulin-like growth factor binding protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122562171-4	chr10	122561689	122562689	+	775.983337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7702.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	49.5	177.0	152.5	45.5	123.0	102.5
Merged-chr1-64597763-4	chr1	64597316	64598316	+	775.982117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009952, exon 9 of 9)	3' UTR (NM_009952, exon 9 of 9)	19352.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78249817-3	chr17	78249285	78250285	+	775.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 2 of 16)	intron (NM_015800, intron 2 of 16)	49537.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67524241-3	chr7	67523738	67524738	+	775.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028144, intron 8 of 8)	intron (NR_028144, intron 8 of 8)	120998.0	NM_175124	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	19.5	24.0	11.0	7.0	16.5	7.5
Merged-chr8-41375689-4	chr8	41375146	41376146	+	775.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019734)	promoter-TSS (NM_019734)	-949.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	78.5	269.5	180.0	66.5	152.0	122.5
Merged-chr2-166491200-2	chr2	166490700	166491700	+	775.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43749.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-49973706-3	chr6	49973206	49974206	+	775.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-136535.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	1.5	9.5	0.0	1.5	9.5	0.0
Merged-chr8-80793977-3	chr8	80793452	80794452	+	775.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021356, intron 2 of 9)	intron (NM_021356, intron 2 of 9)	-54493.0	NM_053124	93762.0	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148060478-3	chr4	148059961	148060961	+	775.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010840)	TTS (NM_010840)	19272.0	NM_001161798	17769.0	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	methylenetetrahydrofolate reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58462095-4	chr16	58461604	58462604	+	775.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356484, intron 13 of 15)	B2_Mm2|SINE|B2	53569.0	NM_028523	73379.0	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-87108417-4	chr15	87107932	87108932	+	775.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-435867.0	NM_001252310	106014.0	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	23.0	3.5	9.5	5.0	0.5	3.0
Merged-chr10-88725525-4	chr10	88725013	88726013	+	775.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5588.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-9093753-2	chr5	9093253	9094253	+	775.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6984.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-112514749-3	chr7	112514274	112515274	+	775.844421	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020606, intron 1 of 12)	intron (NM_020606, intron 1 of 12)	20909.0	NR_154466	102636183.0	Mm.446701	NR_154466		Parvaos	A230071N21Rik	parvin, alpha, opposite strand	ncRNA	15.5	6.5	24.0	6.5	8.0	10.0
Merged-chr4-11128679-2	chr4	11128179	11129179	+	775.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4721.0	NR_151526	100503518.0	Mm.102270	NR_151526	ENSMUSG00000086765	Gm11827	-	predicted gene 11827	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-159555065-3	chr2	159554560	159555560	+	775.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-392281.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88237534-3	chr8	88237034	88238034	+	775.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164499, intron 2 of 11)	(TTTTTG)n|Simple_repeat|Simple_repeat	-34869.0	NM_007406	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44082775-4	chr9	44082292	44083292	+	775.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198092, intron 2 of 12)	RMER15|LTR|ERVL	-2128.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	0.5	0.0	3.5	0.0	0.0	3.5
Merged-chr18-38246167-3	chr18	38245664	38246664	+	775.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015475, intron 1 of 3)	intron (NR_015475, intron 1 of 3)	4034.0	NR_015475	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41788251-3	chr13	41787744	41788744	+	775.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145875, intron 4 of 6)	intron (NM_001145875, intron 4 of 6)	59244.0	NM_175417	109254.0	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4347058-3	chr18	4346510	4347510	+	775.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 2 of 7)	intron (NM_007746, intron 2 of 7)	5943.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146100167-3	chr3	146099665	146100665	+	775.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172864, intron 3 of 22)	MTEb|LTR|ERVL-MaLR	7871.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-43473079-2	chr15	43472579	43473579	+	775.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_046064, intron 1 of 2)	ORR1C1|LTR|ERVL-MaLR	3957.0	NR_046064	100038728.0	Mm.244168	NR_046064	ENSMUSG00000072592	Gm10373	-	predicted gene 10373	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94526001-4	chr10	94525505	94526505	+	775.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172051, intron 1 of 3)	Tigger5|DNA|TcMar-Tigger	11148.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-117518100-2	chr12	117517600	117518600	+	775.75	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175930, exon 2 of 28)	5' UTR (NM_175930, exon 2 of 28)	1621.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	0.0	12.5	3.5	0.0	5.5	2.5
Merged-chr11-98327548-2	chr11	98327048	98328048	+	775.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_010895, exon 2 of 2)	exon (NM_010895, exon 2 of 2)	2097.0	NM_010895	18013.0	Mm.4814	NM_010895	ENSMUSG00000038255	Neurod2	Ndrf|bHLHa1	neurogenic differentiation 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129377298-2	chr4	129376798	129377798	+	775.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_028603, intron 1 of 4)	CpG	730.0	NM_028603	73680.0	Mm.32997	NM_028603	ENSMUSG00000028807	Zbtb8a	2410081M15Rik|AI480941	zinc finger and BTB domain containing 8a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102573499-4	chr4	102573048	102574048	+	775.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	3488.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	121.5	345.0	199.5	141.0	353.0	257.5
Merged-chr7-143295657-6	chr7	143295101	143296101	+	775.733337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_001461, exon 1 of 1)	non-coding (NR_001461, exon 1 of 1)	946.0	NR_001461	63830.0	Mm.356096	NR_001461	ENSMUSG00000101609	Kcnq1ot1	Kvlqt1-as|Lit1|Tssc8	KCNQ1 overlapping transcript 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-119764117-4	chr3	119763694	119764694	+	775.700012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310711, intron 2 of 13)	intron (NM_001310711, intron 2 of 13)	19194.0	NM_001310711	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	2.5	5.5	1.5	2.0	6.0	1.5
Merged-chr13-101763217-6	chr13	101762749	101763749	+	775.680542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 1 of 15)	intron (NM_001077495, intron 1 of 15)	4968.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-5237611-2	chr15	5237111	5238111	+	775.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136079, intron 2 of 2)	intron (NM_001136079, intron 2 of 2)	6576.0	NM_001136079	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-74292344-3	chr13	74291832	74292832	+	775.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009644)	promoter-TSS (NM_009644)	-1.0	NM_001317351	11624.0	Mm.290446	NM_009644	ENSMUSG00000021575	Ahrr	mKIAA1234	aryl-hydrocarbon receptor repressor	protein-coding	0.0	2.0	0.0	0.0	0.5	0.0
Merged-chr13-107027422-3	chr13	107026912	107027912	+	775.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015471, intron 2 of 3)	ORR1E|LTR|ERVL-MaLR	4842.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-36016542-1	chr8	36016042	36017042	+	775.666687	f0_balb.idr	Intergenic	Intergenic	-78286.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	2.0	0.0	3.0	0.0	0.0	9.0
Merged-chr2-148073322-3	chr2	148072824	148073824	+	775.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26355.0	NM_010446	15376.0	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	4.5	7.5	12.0	1.5	4.5	1.5
Merged-chr17-55957351-3	chr17	55956849	55957849	+	775.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_015766)	TTS (NM_015766)	-1838.0	NM_028381	72886.0	Mm.22796	NM_028381	ENSMUSG00000003208	Ccdc94	2900016D05Rik|AI413813	coiled-coil domain containing 94	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4085181-4	chr19	4084681	4085681	+	775.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013878, intron 3 of 6)	intron (NM_013878, intron 3 of 6)	1662.0	NM_013878	29866.0	Mm.46268	NM_013878	ENSMUSG00000024857	Cabp2	-	calcium binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-93271862-2	chr15	93271362	93272362	+	775.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346785, intron 1 of 7)	intron (NM_001346785, intron 1 of 7)	3317.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-113645750-2	chr9	113645250	113646250	+	775.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58598.0	NR_040760	102688.0	Mm.394901	NR_040760	ENSMUSG00000109890	AU023762	-	expressed sequence AU023762	ncRNA	0.0	0.0	0.0	7.0	0.0	0.0
Merged-chr15-62224344-2	chr15	62223848	62224848	+	775.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 3 of 6)	intron (NR_132746, intron 3 of 6)	-4897.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	13.5	4.5	8.0	4.5	11.0	9.5
Merged-chr2-166739717-2	chr2	166739217	166740217	+	775.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25885.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81320898-2	chr7	81320398	81321398	+	775.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 17 of 21)	intron (NM_008803, intron 17 of 21)	24336.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129186355-4	chr2	129185817	129186817	+	775.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5644.0	NR_045264	100048701.0	Mm.428544	NR_045264	ENSMUSG00000084826	AI847159	-	expressed sequence AI847159	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76372127-4	chr12	76371565	76372565	+	775.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178744, intron 1 of 1)	intron (NM_178744, intron 1 of 1)	1799.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86018391-4	chr1	86017890	86018890	+	775.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3552.0	NM_001122732	70060.0	Mm.196313	NM_027029	ENSMUSG00000026226	Spata3	1700011N12Rik|1700029H01Rik|4930424D10Rik|Mtsarg1|Tsarg1	spermatogenesis associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-123294808-2	chr7	123294308	123295308	+	775.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 15 of 19)	intron (NM_001316713, intron 15 of 19)	75107.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92441059-3	chr16	92440569	92441569	+	775.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	25100.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	2.0	8.0	3.0	16.0	1.5	6.5
Merged-chr12-80174605-2	chr12	80174105	80175105	+	775.583374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001346669, exon 15 of 21)	exon (NM_001346669, exon 15 of 21)	-41761.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137722898-3	chr4	137722354	137723354	+	775.56665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081155, intron 18 of 24)	intron (NM_001081155, intron 18 of 24)	-1607.0	NR_138592	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	13.0	7.5	5.5	0.0	3.5	3.5
Merged-chr3-57697356-3	chr3	57696805	57697805	+	775.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	-4768.0	NM_001033349	242037.0	Mm.291091	NM_001033349	ENSMUSG00000074591	Ankub1	Gm410	ankrin repeat and ubiquitin domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112562778-3	chr12	112562246	112563246	+	775.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-26038.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120064187-3	chr11	120063720	120064720	+	775.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009734)	TTS (NM_009734)	-17075.0	NM_007377	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	2.0	7.5	21.0	0.0	2.0	10.0
Merged-chr2-165968390-3	chr2	165967845	165968845	+	775.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24292.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	138.0	287.5	212.0	148.5	281.5	247.0
Merged-chr4-149643585-1	chr4	149643085	149644085	+	775.5	f1_balb.idr	exon (NM_001290989, exon 12 of 18)	exon (NM_001290989, exon 12 of 18)	11982.0	NR_105990	102465983.0		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	0.0	0.0	1.0	0.0	2.0	6.5
Merged-chr2-32976714-2	chr2	32976214	32977214	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151460, intron 5 of 8)	intron (NR_151460, intron 5 of 8)	5369.0	NR_151461	56017.0	Mm.305754	NM_019488	ENSMUSG00000026791	Slc2a8	D2Ertd44e|GLUT8|GlutX1	solute carrier family 2, (facilitated glucose transporter), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5423621-2	chr19	5423123	5424123	+	775.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_015545)	TTS (NR_015545)	1356.0	NM_024176	66556.0	Mm.275446	NM_024176	ENSMUSG00000024914	Drap1	2310074H19Rik|NC2-alpha	Dr1 associated protein 1 (negative cofactor 2 alpha)	protein-coding	3.0	0.0	3.0	0.0	1.5	0.5
Merged-chr5-123457470-2	chr5	123456970	123457970	+	775.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133917, exon 17 of 17)	3' UTR (NM_133917, exon 17 of 17)	24631.0	NM_029594	76399.0	Mm.75049	NM_029594	ENSMUSG00000029437	Il31	1700013B14Rik	interleukin 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-84062691-2	chr9	84062191	84063191	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199195, intron 8 of 10)	intron (NM_199195, intron 8 of 10)	113910.0	NM_199195	12040.0	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120603018-2	chr1	120602518	120603518	+	775.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010133, exon 1 of 2)	5' UTR (NM_010133, exon 1 of 2)	531.0	NM_010133	13798.0	Mm.2657	NM_010133	ENSMUSG00000058665	En1	En-1|Mo-en.1|engrailed-1	engrailed 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113661685-2	chr12	113661185	113662185	+	775.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117777.0	NM_174885	238406.0	Mm.188683	NM_174885	ENSMUSG00000043945	Adam6a	Adam6|tMDCIV	a disintegrin and metallopeptidase domain 6A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86139883-2	chr15	86139383	86140383	+	775.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145475, exon 13 of 13)	3' UTR (NM_145475, exon 13 of 13)	-45845.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	9.5	8.0	3.5	4.0	14.5	3.5
Merged-chr5-110100844-2	chr5	110100344	110101344	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281812, intron 1 of 6)	intron (NM_001281812, intron 1 of 6)	285.0	NM_001281812	403178.0	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-83523738-3	chr13	83523207	83524207	+	775.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347574)	promoter-TSS (NM_001347574)	51.0	NM_001347573	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0.0	0.0	1.0	0.0	0.0	0.5
Merged-chr4-122826914-2	chr4	122826414	122827414	+	775.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-9313.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69879357-2	chr11	69878857	69879857	+	775.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153143, exon 1 of 1)	3' UTR (NM_153143, exon 1 of 1)	-1339.0	NM_001195710	100503361.0	Mm.340490	NM_001195710	ENSMUSG00000094845	Tmem95	432576	transmembrane protein 95	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-10964924-3	chr8	10964421	10965421	+	775.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36464.0	NR_135302	665306.0	Mm.358758	NR_030715	ENSMUSG00000038917	3930402G23Rik	-	RIKEN cDNA 3930402G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4569270-2	chr8	4568770	4569770	+	775.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR22_Mur|LTR|ERVK	-43900.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21470623-2	chr9	21470123	21471123	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 4 of 19)	intron (NM_001357721, intron 4 of 19)	25941.0	NR_029585	387194.0		NR_029585	ENSMUSG00000065547	Mir199a-1	Mirn199|Mirn199a-1|mir-199a-1	microRNA 199a-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152720818-4	chr1	152720312	152721312	+	775.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	-29739.0	NM_001081197	71281.0	Mm.158650	NM_001081197	ENSMUSG00000055547	Apobec4	4933431M11Rik	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59566934-2	chr15	59566434	59567434	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-81720.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	0.0	2.0	2.0	0.5	2.0
Merged-chr10-78171736-2	chr10	78171236	78172236	+	775.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029546, exon 21 of 21)	3' UTR (NM_029546, exon 21 of 21)	-1968.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91867881-2	chr16	91867381	91868381	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 26 of 28)	intron (NM_001110275, intron 26 of 28)	63749.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-92484931-2	chr13	92484431	92485431	+	775.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163627)	promoter-TSS (NM_001163627)	-900.0	NM_001163627	73942.0	Mm.85935	NM_001163627	ENSMUSG00000034334	Fam151b	4930405M20Rik	family with sequence similarity 151, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123498099-4	chr9	123497616	123498616	+	775.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013860, intron 1 of 7)	intron (NM_013860, intron 1 of 7)	19415.0	NM_013860	29806.0	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4305785-4	chr19	4305222	4306222	+	775.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130863, intron 1 of 21)	CpG	500.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	15.0	65.5	40.0	10.0	36.5	13.5
Merged-chr12-3299190-2	chr12	3298690	3299690	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 1 of 5)	B3|SINE|B2	10779.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-129434346-2	chr3	129433846	129434846	+	775.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033594, exon 1 of 1)	non-coding (NR_033594, exon 1 of 1)	673.0	NR_033594	435755.0	Mm.430561	NR_033594	ENSMUSG00000105712	Pou5f1-rs4	EG435755|Gm5712|Oct4P1|Otf3-rs4|Otf3d	POU domain, class 5, transcription factor 1, related sequence 4	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70352709-3	chr8	70352245	70353245	+	775.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030680, intron 1 of 23)	CpG	534.0	NM_030680	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	6.0	39.0	39.5	21.5	55.0	70.0
Merged-chr2-109902034-2	chr2	109901534	109902534	+	775.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_033473)	TTS (NR_033473)	11156.0	NM_011699	22343.0	Mm.235300	NM_011699	ENSMUSG00000027162	Lin7c	9130007B12Rik|AI303698|AU019331|AW125731|D2Ertd520e|LIN-7-C|LIN-7C|MALS-3|Veli3	lin-7 homolog C (C. elegans)	protein-coding	0.0	0.0	0.5	2.5	0.0	4.5
Merged-chr19-41349840-2	chr19	41349340	41350340	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	35230.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.0	0.0	3.0	1.5	7.5	0.0
Merged-chr8-88244499-4	chr8	88244000	88245000	+	775.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164499, intron 3 of 11)	intron (NM_001164499, intron 3 of 11)	-27903.0	NM_007406	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0.0	1.5	0.0	0.0	1.5	0.0
Merged-chr1-92850196-2	chr1	92849696	92850696	+	775.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029559)	promoter-TSS (NR_029559)	-182.0	NR_029559	387167.0		NR_029559	ENSMUSG00000065470	Mir149	Mirn149|mir-149|mmu-mir-149	microRNA 149	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34387262-2	chr7	34386762	34387762	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025948, intron 1 of 10)	intron (NM_025948, intron 1 of 10)	2443.0	NM_001360654	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-18999110-2	chr7	18998610	18999610	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145579, intron 2 of 2)	intron (NM_145579, intron 2 of 2)	-4955.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr12-4198307-2	chr12	4197807	4198807	+	775.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_138305, exon 7 of 21)	exon (NM_138305, exon 7 of 21)	35658.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64613486-2	chr17	64612986	64613986	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	B3A|SINE|B2	11837.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118210335-2	chr11	118209835	118210835	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	L2b|LINE|L2	2407.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93155680-2	chr2	93155180	93156180	+	775.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-31868.0	NM_001356536	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-61034122-2	chr19	61033622	61034622	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 3 of 15)	intron (NM_018869, intron 3 of 15)	106718.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	0.0	9.0	4.5	5.5	11.5	5.5
Merged-chr5-140757221-2	chr5	140756721	140757721	+	775.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	33094.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97069813-2	chr7	97069313	97070313	+	775.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11938.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120783797-2	chr11	120783297	120784297	+	775.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346709)	promoter-TSS (NM_001346709)	407.0	NM_009053	19719.0	Mm.871	NM_009053	ENSMUSG00000025158	Rfng	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134251903-2	chr4	134251403	134252403	+	775.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001099296, exon 2 of 2)	exon (NM_001099296, exon 2 of 2)	2203.0	NM_001099296	72690.0	Mm.100168	NM_001099296	ENSMUSG00000050105	Grrp1	2810043G13Rik|Fam110d	glycine/arginine rich protein 1	protein-coding	5.5	0.0	1.5	2.5	4.0	4.0
Merged-chr1-78898557-2	chr1	78898057	78899057	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151519, intron 3 of 3)	intron (NR_151519, intron 3 of 3)	81646.0	NM_021342	57814.0	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr13-103778805-2	chr13	103778305	103779305	+	775.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-4197.0	NM_001361085	218543.0	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110424731-2	chr11	110424231	110425231	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	25629.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-143567858-2	chr3	143567358	143568358	+	775.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	144285.0	NR_040405	621809.0	Mm.360134	NR_040405	ENSMUSG00000105279	Gm6260	EG621809	predicted gene 6260	ncRNA	4.5	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71629093-2	chr6	71628593	71629593	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362200, intron 2 of 25)	intron (NM_001362200, intron 2 of 25)	3593.0	NM_173001	104263.0	Mm.260479	NM_173001	ENSMUSG00000053470	Kdm3a	1700105C21Rik|C230043E16Rik|JHDM2a|Jmjd1|Jmjd1a|KDM2A|TGSA|Tsga	lysine (K)-specific demethylase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53348807-2	chr11	53348307	53349307	+	775.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-1960.0	NM_033565	93736.0	Mm.395281	NM_033565	ENSMUSG00000049470	Aff4	AF5Q31|Alf4|Laf4l|MCEF	AF4/FMR2 family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95856367-2	chr9	95855867	95856867	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271569, intron 1 of 1)	PB1|SINE|Alu	1150.0	NR_073361	73410.0	Mm.443314	NM_028533	ENSMUSG00000096655	1700065D16Rik	-	RIKEN cDNA 1700065D16 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120028314-2	chr4	120027814	120028814	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-132892.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77694206-2	chr11	77693706	77694706	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024205, intron 2 of 3)	intron (NM_001024205, intron 2 of 3)	8067.0	NM_001024205	68564.0	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-69588620-4	chr18	69588121	69589121	+	775.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	242461.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34002400-4	chr11	34001892	34002892	+	775.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-9199.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	0.5	4.5	2.0	2.0	5.5	2.0
Merged-chr3-135683588-3	chr3	135683111	135684111	+	775.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 1 of 24)	intron (NM_008689, intron 1 of 24)	7936.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171058563-3	chr1	171058039	171059039	+	775.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010188, intron 2 of 4)	intron (NM_010188, intron 2 of 4)	855.0	NM_001356511	14131.0	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	43.0	155.0	71.5	23.5	126.5	58.0
Merged-chr6-88306884-3	chr6	88306397	88307397	+	775.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149744, intron 3 of 5)	intron (NR_149744, intron 3 of 5)	84629.0	NM_019964	56691.0	Mm.272871	NM_019964	ENSMUSG00000048206	Dnajb8	1700016F14Rik|1700031F10Rik|AI326313|mDj6	DnaJ heat shock protein family (Hsp40) member B8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62466759-3	chr11	62466254	62467254	+	775.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039536, intron 1 of 6)	intron (NM_001039536, intron 1 of 6)	8294.0	NM_001039536	327942.0	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51165506-4	chr14	51165055	51166055	+	775.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3295.0	NM_019398	54159.0	Mm.377125	NM_019398	ENSMUSG00000059606	Rnase2b	Ear5|Raf4|mR5	ribonuclease, RNase A family, 2B (liver, eosinophil-derived neurotoxin)	protein-coding	58.0	110.0	97.0	22.5	51.0	36.0
Merged-chr2-101762640-4	chr2	101762147	101763147	+	775.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 3 of 8)	intron (NM_001355625, intron 3 of 8)	35060.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	21.5	87.5	50.5	16.5	37.0	42.5
Merged-chr10-20828513-4	chr10	20828018	20829018	+	775.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-103440.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80061083-3	chr12	80060588	80061588	+	775.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51925.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27710763-6	chr2	27710182	27711182	+	775.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290482)	promoter-TSS (NM_001290482)	99.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-66518415-2	chr17	66517915	66518915	+	775.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_024448, intron 1 of 5)	B1_Mm|SINE|Alu	1255.0	NM_024448	19328.0	Mm.248313	NM_024448	ENSMUSG00000023460	Rab12	2900054P15Rik|AW555448|C77700	RAB12, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127512054-4	chr10	127511513	127512513	+	775.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2926.0	NM_001098789	407790.0	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-97920547-2	chr4	97920047	97921047	+	775.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	142921.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103365614-2	chr11	103365114	103366114	+	775.333374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_183034, exon 12 of 12)	3' UTR (NM_183034, exon 12 of 12)	-1922.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80669406-2	chr10	80668906	80669906	+	775.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_021462, intron 7 of 13)	intron (NM_021462, intron 7 of 13)	6887.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11575745-3	chr8	11575198	11576198	+	775.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17288.0	NM_001302459	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-55928830-3	chr7	55928308	55929308	+	775.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 30 of 30)	MLT1E1|LTR|ERVL-MaLR	33685.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	9.0	12.0	6.0	7.5	19.5	8.0
Merged-chr3-97230776-2	chr3	97230276	97231276	+	775.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3412.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-50045012-3	chr18	50044531	50045531	+	775.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155293, intron 2 of 3)	MER119|DNA|hAT-Charlie	-8251.0	NM_134131	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0.0	10.5	0.0	7.5	6.0	5.5
Merged-chr7-61958396-3	chr7	61957893	61958893	+	775.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015599, intron 3 of 3)	RMER15-int|LTR|ERVL	-18287.0	NR_030557	100124439.0		NR_030557	ENSMUSG00000093187	Mir344-2	Mirn344-2|mir-344-2	microRNA 344-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79251775-2	chr11	79251275	79252275	+	775.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_019653, intron 1 of 8)	RSINE1|SINE|B4	2920.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	2.5	3.0	3.5	5.5	7.0	2.0
Merged-chr15-80084072-3	chr15	80083615	80084615	+	775.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013762)	promoter-TSS (NM_013762)	-709.0	NM_013762	27367.0	Mm.290771	NM_013762	ENSMUSG00000060036	Rpl3	F2|J1	ribosomal protein L3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102804238-3	chr2	102803756	102804756	+	775.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57496.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	6.0	3.5	6.5	7.0	11.5	7.5
Merged-chr4-81744548-3	chr4	81744092	81745092	+	775.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-257579.0	NR_030570	100124446.0		NR_030570	ENSMUSG00000077941	Mir466h	Mirn466h	microRNA 466h	ncRNA	7.0	10.5	1.0	7.0	10.5	1.0
Merged-chr2-52901046-4	chr2	52900537	52901537	+	775.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	Lx8|LINE|L1	43169.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107784181-3	chr13	107783686	107784686	+	775.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 3 of 14)	intron (NM_145456, intron 3 of 14)	96789.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-43470358-3	chr11	43469856	43470856	+	775.272217	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3950.0	NM_026979	69183.0	Mm.390374	NM_026979	ENSMUSG00000046491	C1qtnf2	1810033K05Rik|CTRP2	C1q and tumor necrosis factor related protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19068947-2	chr3	19068447	19069447	+	775.266663	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR40|LTR|ERVK	94148.0	NM_028840	74252.0	Mm.200383	NM_028840	ENSMUSG00000027599	Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding	7.5	1.5	0.0	4.0	0.0	3.0
Merged-chr14-21994304-2	chr14	21993804	21994804	+	775.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4703.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115491274-2	chr5	115490789	115491789	+	775.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-6805.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	15.5	21.0	19.5	11.5	22.5	20.0
Merged-chr10-42962592-4	chr10	42962124	42963124	+	775.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28538.0	NR_153349	327749.0	Mm.428887	NR_153349		Gm5079	C230040G06	predicted gene 5079	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35256159-2	chr17	35255659	35256659	+	775.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4870.0	NR_106169	102465886.0		NR_106169	ENSMUSG00000098269	Mir8094	Gm27513|mmu-mir-8094	microRNA 8094	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16138798-2	chr19	16138298	16139298	+	775.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	5967.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53099379-2	chr4	53098879	53099879	+	775.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 7 of 49)	RSINE1|SINE|B4	60516.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55500234-2	chr12	55499734	55500734	+	775.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7587.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131431630-4	chr1	131431126	131432126	+	775.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 3 of 22)	intron (NM_001081011, intron 3 of 22)	95735.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	12.5	12.5	8.5	5.0	7.0	12.5
Merged-chr8-126498843-2	chr8	126498343	126499343	+	775.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-23778.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0.0	0.0	1.5	0.0	0.0	1.0
Merged-chr11-67965593-4	chr11	67965061	67966061	+	775.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361351)	promoter-TSS (NM_001361351)	81.0	NM_027963	71860.0	Mm.441823	NM_027963	ENSMUSG00000020904	Cfap52	1700019F09Rik|4933417B11Rik|WDRPUH|Wdr16	cilia and flagella associated protein 52	protein-coding	12.5	22.5	10.5	8.0	11.0	9.0
Merged-chr18-36510285-15	chr18	36509798	36510798	+	775.222229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010415, intron 3 of 5)	intron (NM_010415, intron 3 of 5)	5507.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	0.0	3.0	2.0	0.0	3.0	5.0
Merged-chr2-60839007-3	chr2	60838518	60839518	+	775.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	42420.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54458380-3	chr11	54457870	54458870	+	775.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173753, intron 1 of 17)	intron (NM_173753, intron 1 of 17)	20191.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-74564499-3	chr13	74564006	74565006	+	775.200012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70556.0	NM_146231	235956.0		NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40877813-2	chr9	40877401	40878401	+	775.166687	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178245)	TTS (NM_178245)	3774.0	NM_178245	244813.0	Mm.261652	NM_178245	ENSMUSG00000054360	Bsx	Bsx1a|Bsx1b	brain specific homeobox	protein-coding	1.5	0.0	2.5	0.0	4.5	1.5
Merged-chr13-60508464-3	chr13	60507999	60508999	+	775.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93448.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	15.0	46.5	18.0	9.5	10.0	5.5
Merged-chr8-95833797-4	chr8	95833302	95834302	+	775.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19689.0	NM_172758	234595.0	Mm.29267	NM_172758	ENSMUSG00000036534	Slc38a7	D430050E18	solute carrier family 38, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-56121354-2	chr9	56120854	56121854	+	775.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_011193, intron 5 of 14)	intron (NM_011193, intron 5 of 14)	31378.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-123264045-4	chr10	123263548	123264548	+	775.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182807)	promoter-TSS (NM_182807)	-28.0	NR_153334	268354.0	Mm.51939	NM_182807	ENSMUSG00000044071	Fam19a2	6330575M02|FAM19A2 TAFA-2|Sam2|TAFA2|Tafa-2	family with sequence similarity 19, member A2	protein-coding	0.0	4.0	0.0	0.0	0.0	0.0
Merged-chr5-125058425-2	chr5	125057925	125058925	+	775.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_011424, intron 17 of 46)	GC_rich|Low_complexity|Low_complexity	54950.0	NM_028443	73121.0	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr8-106737039-3	chr8	106736539	106737539	+	775.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173037, intron 12 of 17)	L2b|LINE|L2	53971.0	NM_173037	272538.0	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	0.0	0.0	0.0	6.0	0.0	0.0
Merged-chr7-143584105-3	chr7	143583594	143584594	+	775.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252593, intron 6 of 21)	intron (NM_001252593, intron 6 of 21)	-13335.0	NR_106031	102465644.0		NR_106031	ENSMUSG00000098593	Mir7064	Gm27632|mmu-mir-7064	microRNA 7064	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102509899-2	chr4	102509399	102510399	+	775.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-60161.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127675199-3	chr7	127674715	127675715	+	775.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347652, intron 5 of 5)	LTR41B|LTR|ERVL	-33272.0	NR_030428	791073.0		NR_030428	ENSMUSG00000076454	Mir762	Mirn762|mir-762|mmu-mir-762	microRNA 762	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120001358-2	chr9	120000822	120001822	+	775.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-16580.0	NM_153287	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.0	13.0	1.5	0.0	5.0	6.0
Merged-chr10-54074007-2	chr10	54073507	54074507	+	775.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 2 of 12)	intron (NM_008548, intron 2 of 12)	1789.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191611881-2	chr1	191611366	191612366	+	775.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001306203, exon 12 of 19)	exon (NM_001306203, exon 12 of 19)	36230.0	NM_001306204	77065.0	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	1.0	8.0	5.5	2.5	11.0	7.0
Merged-chr6-43848041-3	chr6	43847515	43848515	+	775.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-181737.0	NM_001311111	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144705296-4	chr3	144704780	144705780	+	775.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 5 of 10)	intron (NM_001282037, intron 5 of 10)	15055.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125328480-4	chr6	125327978	125328978	+	775.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011324, intron 1 of 11)	intron (NM_011324, intron 1 of 11)	7138.0	NM_011324	20276.0	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	0.0	0.0	0.5	3.0	4.5	0.0
Merged-chr8-46923591-4	chr8	46923081	46924081	+	775.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-63306.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167280982-2	chr2	167280482	167281482	+	775.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40445.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83590970-2	chr11	83590470	83591470	+	775.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009139, intron 1 of 3)	L1MB3|LINE|L1	2117.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53027326-6	chr4	53026834	53027834	+	775.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	15454.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51617976-6	chr11	51617507	51618507	+	775.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1766.0	NM_026631	52530.0	Mm.28203	NM_026631	ENSMUSG00000001056	Nhp2	2410130M07Rik|D11Ertd175e|Nola2	NHP2 ribonucleoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117657529-3	chr11	117657043	117658043	+	775.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 1 of 21)	intron (NM_198022, intron 1 of 21)	3254.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60375745-3	chr10	60375267	60376267	+	775.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 37 of 68)	intron (NM_001252635, intron 37 of 68)	-23959.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103272168-4	chr11	103271703	103272703	+	775.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4802.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	0.0	2.0	0.5	0.0	5.0	0.0
Merged-chr8-13551981-2	chr8	13551481	13552481	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080781, intron 7 of 8)	intron (NM_001080781, intron 7 of 8)	10480.0	NM_025601	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13632563-1	chr8	13632063	13633063	+	775.0	f0_balb.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	45024.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8940702-2	chr19	8940202	8941202	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144872, intron 20 of 21)	intron (NM_144872, intron 20 of 21)	-1218.0	NM_011842	23942.0	Mm.25339	NM_011842	ENSMUSG00000071646	Mta2	AW550797|Mata1l1|Mta1l1|mmta2	metastasis-associated gene family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117094305-4	chr11	117093807	117094807	+	775.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16959.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65857020-2	chr5	65856520	65857520	+	775.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6549.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27217420-2	chr15	27216920	27217920	+	775.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-249257.0	NM_020332	11732.0	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-59041754-2	chr19	59041251	59042251	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 4 of 16)	intron (NM_001114312, intron 4 of 16)	34318.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	2.0	0.0	0.0	0.0	0.0	1.5
Merged-chr18-38284056-2	chr18	38283556	38284556	+	775.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_017378, exon 1 of 4)	exon (NM_017378, exon 1 of 4)	345.0	NM_017378	53601.0	Mm.12862	NM_017378	ENSMUSG00000024440	Pcdh12	Pcdh14|VE-cad-2	protocadherin 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131913970-2	chr1	131913447	131914447	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145804, intron 1 of 6)	B2_Mm1a|SINE|B2	3489.0	NM_175294	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	6.0	2.5	3.5	2.5	1.0	0.5
Merged-chr15-76942282-2	chr15	76941782	76942782	+	775.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5979.0	NM_054099	117171.0	Mm.322968	NM_054099	ENSMUSG00000063236	1110038F14Rik	-	RIKEN cDNA 1110038F14 gene	protein-coding	0.0	0.0	0.0	1.5	0.0	0.0
Merged-chr18-12726552-2	chr18	12726052	12727052	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028341, intron 8 of 13)	intron (NM_028341, intron 8 of 13)	11741.0	NR_035471	100316699.0		NR_035471	ENSMUSG00000087950	Mir1948	mir-1948|mmu-mir-1948	microRNA 1948	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117248653-3	chr8	117248197	117249197	+	775.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8322.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95893903-2	chr16	95893403	95894403	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040484, intron 1 of 3)	MTE2b|LTR|ERVL-MaLR	4810.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131137790-2	chr1	131137290	131138290	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145508, intron 1 of 2)	CpG	444.0	NM_145508	226419.0	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	0.0	1.5	0.0	0.0	1.5	0.0
Merged-chr7-143054489-2	chr7	143053989	143054989	+	775.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110354)	promoter-TSS (NR_110354)	-803.0	NR_110354	97423.0	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	5.5	10.5	6.5	6.5	2.0	13.5
Merged-chr8-91108359-1	chr8	91107859	91108859	+	775.0	f0_balb.idr	intron (NM_011250, intron 17 of 21)	L1M4b|LINE|L1	25380.0	NM_001358938	14339.0	Mm.324588	NM_010241	ENSMUSG00000031667	Aktip	AL023020|Fif|Ft|Ft1|Fts	thymoma viral proto-oncogene 1 interacting protein	protein-coding	2.0	2.0	6.5	14.5	29.5	20.5
Merged-chr2-45038853-2	chr2	45038353	45039353	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-15676.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-145662193-2	chr5	145661697	145662697	+	775.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F|LINE|L1	57939.0	NM_017396	53973.0	Mm.379071	NM_017396	ENSMUSG00000075551	Cyp3a41a	Cyp3a41	cytochrome P450, family 3, subfamily a, polypeptide 41A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66246118-4	chr5	66245617	66246617	+	775.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13781.0	NM_001302833	70918.0	Mm.23166	NM_027602	ENSMUSG00000029206	Nsun7	4921525L17Rik	NOL1/NOP2/Sun domain family, member 7	protein-coding	3.0	1.0	2.0	7.0	0.0	2.5
Merged-chr18-67201993-1	chr18	67201493	67202493	+	775.0	f0_balb.idr	intron (NM_177137, intron 5 of 11)	intron (NM_177137, intron 5 of 11)	-3366.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	7.5	21.5	15.5	22.5	33.0	26.5
Merged-chr1-16226741-2	chr1	16226241	16227241	+	775.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	120859.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45031469-4	chr13	45030979	45031979	+	775.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29383.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	34.0	21.0	33.0	13.0	29.0	35.5
Merged-chr17-5596102-2	chr17	5595602	5596602	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	103502.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108415484-2	chr3	108414984	108415984	+	775.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017392)	promoter-TSS (NM_017392)	10.0	NM_017392	53883.0	Mm.39728	NM_017392	ENSMUSG00000068740	Celsr2	Adgrc2|EGFL2|Flamingo1|flamingo|mKIAA0279|mfmi1	cadherin, EGF LAG seven-pass G-type receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6497848-3	chr11	6497349	6498349	+	775.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21773.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	38.5	69.5	40.5	9.0	20.0	3.5
Merged-chr5-123160006-1	chr5	123159506	123160506	+	775.0	f1_balb.idr	exon (NM_001040398, exon 12 of 17)	exon (NM_001040398, exon 12 of 17)	17813.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	3.0	0.0	2.5	0.0	0.0	0.0
Merged-chr8-84833419-1	chr8	84832919	84833919	+	775.0	f1_balb.idr	intron (NM_183358, intron 1 of 1)	intron (NM_183358, intron 1 of 1)	1137.0	NM_183358	102060.0	Mm.489649	NM_183358	ENSMUSG00000033751	Gadd45gip1	2310040G17Rik|AI425883|Crif1|MRP-L59|Plinp1	growth arrest and DNA-damage-inducible, gamma interacting protein 1	protein-coding	0.0	9.0	11.5	10.5	4.0	10.5
Merged-chr8-126493388-2	chr8	126492888	126493888	+	775.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-18323.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100407635-1	chr13	100407135	100408135	+	775.0	f1_balb.idr	TTS (NM_008670)	TTS (NM_008670)	45229.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	1.0	3.0	0.5	0.5	0.0	2.0
Merged-chr14-9391373-2	chr14	9390873	9391873	+	775.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-492722.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-13006238-2	chr7	13005738	13006738	+	775.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001024699, exon 3 of 3)	exon (NM_001024699, exon 3 of 3)	3614.0	NM_001024699	232879.0	Mm.279272	NM_001024699	ENSMUSG00000049600	Zbtb45	BB161562|Gm157|Zfp499	zinc finger and BTB domain containing 45	protein-coding	0.0	0.0	0.5	11.0	0.0	0.0
Merged-chr9-116126713-1	chr9	116126213	116127213	+	775.0	f0_balb.idr	intron (NM_029575, intron 3 of 6)	intron (NM_029575, intron 3 of 6)	48650.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	1.0	0.0	0.0	0.0	4.0	1.5
Merged-chr7-81308397-2	chr7	81307897	81308897	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 9 of 21)	B1_Mus1|SINE|Alu	36837.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125099404-2	chr6	125098917	125099917	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346610, intron 2 of 38)	intron (NM_001346610, intron 2 of 38)	2393.0	NR_106012	102466272.0		NR_106012	ENSMUSG00000098762	Mir7045	Gm27758|mmu-mir-7045	microRNA 7045	ncRNA	0.0	1.5	0.0	0.0	0.5	1.0
Merged-chr14-21746445-2	chr14	21745945	21746945	+	775.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001007268, exon 3 of 8)	exon (NM_001007268, exon 3 of 8)	2177.0	NM_001007268	27389.0	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107335933-2	chr11	107335433	107336433	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	134787.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95356799-2	chr3	95356303	95357303	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163642, intron 1 of 21)	intron (NM_001163642, intron 1 of 21)	399.0	NM_001163641	84505.0	Mm.490259	NM_018877	ENSMUSG00000015697	Setdb1	AU022152|ESET|KMT1E|mKIAA0067	SET domain, bifurcated 1	protein-coding	5.5	13.0	20.0	0.0	0.0	0.0
Merged-chr4-53038043-2	chr4	53037543	53038543	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 46 of 49)	intron (NM_013454, intron 46 of 49)	26163.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39240039-3	chr10	39239532	39240532	+	775.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76238.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45586613-4	chr17	45586119	45587119	+	775.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199113, intron 12 of 13)	B3A|SINE|B2	5774.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97469788-2	chr15	97469288	97470288	+	775.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-222501.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94085278-2	chr16	94084778	94085778	+	775.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011377)	promoter-TSS (NM_011377)	18.0	NM_011377	20465.0	Mm.4775	NM_011377	ENSMUSG00000062713	Sim2	bHLHe15	single-minded family bHLH transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117840156-2	chr10	117839656	117840656	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	5818.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	13.0	42.5	28.0	12.5	42.5	28.0
Merged-chr15-103482647-2	chr15	103482147	103483147	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153505, intron 21 of 30)	intron (NM_153505, intron 21 of 30)	-20387.0	NM_008800	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29363802-2	chr19	29363302	29364302	+	775.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1931.0	NM_026362	67759.0	Mm.275511	NM_026362	ENSMUSG00000016495	Plgrkt	1110007H22Rik|5033414D02Rik|AI852040|Plg-R(KT)|Plg-RKT	plasminogen receptor, C-terminal lysine transmembrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-17718684-2	chr19	17718184	17719184	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163144, intron 3 of 20)	ORR1C2|LTR|ERVL-MaLR	118948.0	NM_001163144	18552.0	Mm.3401	NM_001163144	ENSMUSG00000024713	Pcsk5	PC5|PC6|SPC6|b2b1549Clo|b2b585Clo	proprotein convertase subtilisin/kexin type 5	protein-coding	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21850478-3	chr10	21849979	21850979	+	775.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31705.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	1.5	9.5	2.5	13.0	14.5	12.0
Merged-chr17-35827994-2	chr17	35827494	35828494	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008027, intron 8 of 12)	B4A|SINE|B4	4637.0	NM_008027	14251.0	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	0.0	3.5	1.5	0.5	8.5	0.0
Merged-chr4-91376502-1	chr4	91376002	91377002	+	775.0	f0_balb.idr	promoter-TSS (NM_001357188)	promoter-TSS (NM_001357188)	-6.0	NM_001347149	15569.0	Mm.318042	NM_010486	ENSMUSG00000008489	Elavl2	Hub|mel-N1	ELAV like RNA binding protein 1	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr17-45567182-1	chr17	45566682	45567682	+	775.0	f1_c57bl6.idr	TTS (NM_008302)	TTS (NM_008302)	3246.0	NM_001357105	73836.0	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	7.5	0.5	3.5	2.5	0.5	0.0
Merged-chr13-8584920-2	chr13	8584420	8585420	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110345, intron 3 of 10)	intron (NR_110345, intron 3 of 10)	286124.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145340494-2	chr7	145339962	145340962	+	774.988098	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25627.0	NM_203490	211578.0	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-144973473-4	chr4	144972974	144973974	+	774.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001276502, exon 69 of 69)	3' UTR (NM_001276502, exon 69 of 69)	80337.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45093023-3	chr9	45092542	45093542	+	774.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005421, intron 5 of 10)	intron (NM_001005421, intron 5 of 10)	13859.0	NM_001005421	270152.0	Mm.190461	NM_001005421	ENSMUSG00000048534	Jaml	AMICA|Amica1|Crea7|Gm638	junction adhesion molecule like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-147083675-4	chr2	147083196	147084196	+	774.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023504)	TTS (NM_023504)	1649.0	NM_023504	228731.0	Mm.315498	NM_023504	ENSMUSG00000054160	Nkx2-4	1700001P03Rik|Nkx-2.4|tinman	NK2 homeobox 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170703145-3	chr1	170702662	170703662	+	774.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58630.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-64638636-3	chr14	64638138	64639138	+	774.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-13893.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53915194-3	chr18	53914715	53915715	+	774.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152809, intron 4 of 12)	intron (NM_152809, intron 4 of 12)	53102.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	6.0	2.0	3.5	6.5	28.5	20.5
Merged-chr7-82868836-4	chr7	82868296	82869296	+	774.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175366, exon 2 of 2)	exon (NM_175366, exon 2 of 2)	1463.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr4-132077148-2	chr4	132076648	132077648	+	774.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1835.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109352870-2	chr3	109352370	109353370	+	774.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 1 of 26)	intron (NM_020505, intron 1 of 26)	12187.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	1.5	0.0	0.5	7.5	1.5	3.0
Merged-chr10-8948459-3	chr10	8948017	8949017	+	774.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62447.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	16.0	3.5	12.0	5.0	2.0	5.0
Merged-chr3-95154094-3	chr3	95153632	95154632	+	774.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6288.0	NR_073550	20360.0	Mm.23662	NM_011351	ENSMUSG00000038777	Sema6c	Semay|mKIAA1869	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17772681-3	chr6	17772179	17773179	+	774.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	intron (NM_022332, intron 1 of 15)	23509.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29369045-1	chr19	29368545	29369545	+	774.833313	f0_balb.idr	intron (NM_021893, intron 1 of 6)	intron (NM_021893, intron 1 of 6)	1607.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90557297-6	chr2	90556791	90557791	+	774.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	L1MC4a|LINE|L1	23356.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	72.0	130.5	90.5	95.0	183.5	89.5
Merged-chr16-45371216-2	chr16	45370717	45371717	+	774.799988	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	37836.0	NM_001358443	17470.0	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	20.0	7.5	0.0	15.5	21.5	10.5
Merged-chr1-131561572-2	chr1	131561072	131562072	+	774.791626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	33669.0	NM_175382	108900.0	Mm.31278	NM_175382	ENSMUSG00000055184	Fam72a	2700049P18Rik|P17	family with sequence similarity 72, member A	protein-coding	35.0	64.0	35.5	58.5	75.5	54.5
Merged-chr8-79734498-3	chr8	79734007	79735007	+	774.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357237, intron 5 of 5)	intron (NM_001357237, intron 5 of 5)	22658.0	NM_001357236	68999.0	Mm.257445	NM_026904	ENSMUSG00000036977	Anapc10	1500026N15Rik|A830003M23Rik|APC10	anaphase promoting complex subunit 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-105198653-3	chr14	105198145	105199145	+	774.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21318.0	NM_134077	74213.0	Mm.474531	NM_134077	ENSMUSG00000022119	Rbm26	1700009P03Rik|AI447318|C230097K14Rik|C86225|MLZ-393|Pro1777|Se70-2	RNA binding motif protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-41281213-3	chr5	41280703	41281703	+	774.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	426488.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	3.0	0.0	0.0	3.0	0.0	3.5
Merged-chr7-101873246-3	chr7	101872734	101873734	+	774.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2446.0	NM_001252552	14275.0	Mm.2135	NM_008034	ENSMUSG00000001827	Folr1	FBP1|Folbp-1|Folbp1	folate receptor 1 (adult)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91395888-3	chr2	91395384	91396384	+	774.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175123, intron 2 of 8)	RMER19C|LTR|ERVK	48830.0	NM_001311144	228356.0	Mm.386861	NM_175123	ENSMUSG00000040591	1110051M20Rik	AI586322	RIKEN cDNA 1110051M20 gene	protein-coding	0.0	0.0	1.5	2.0	2.5	4.5
Merged-chr15-38516600-2	chr15	38516100	38517100	+	774.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301688, intron 1 of 11)	intron (NM_001301688, intron 1 of 11)	2666.0	NM_001301688	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80056576-2	chr10	80056076	80057076	+	774.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008162)	TTS (NM_008162)	2557.0	NM_001037741	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128400824-4	chr7	128400332	128401332	+	774.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 3 of 4)	intron (NM_026418, intron 3 of 4)	17340.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153480573-4	chr1	153480078	153481078	+	774.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007842, intron 4 of 27)	B3|SINE|B2	7082.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-41600508-2	chr3	41599988	41600988	+	774.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130184, intron 7 of 10)	intron (NM_001130184, intron 7 of 10)	35608.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr1-106433852-2	chr1	106433352	106434352	+	774.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	112779.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	7.5	0.0	0.0	0.0	3.5	3.0
Merged-chr5-21676155-4	chr5	21675635	21676635	+	774.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359964, intron 2 of 4)	intron (NM_001359964, intron 2 of 4)	25261.0	NM_001359964	242864.0	Mm.153292	NM_178728	ENSMUSG00000044968	Napepld	A530089G06|Mbldc1|NAPE-PLD	N-acyl phosphatidylethanolamine phospholipase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23620248-3	chr13	23619771	23620771	+	774.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177653, intron 1 of 1)	intron (NM_001177653, intron 1 of 1)	823.0	NM_001177653	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-31172452-4	chr7	31171943	31172943	+	774.712524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	10085.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	0.0	0.0	1.0	1.5	0.0	4.0
Merged-chr2-166035820-4	chr2	166035269	166036269	+	774.708313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 2 of 22)	intron (NM_008679, intron 2 of 22)	43132.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	3.0	11.0	3.0	5.0	14.5	7.5
Merged-chr12-51355501-4	chr12	51355000	51356000	+	774.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015099, intron 4 of 14)	MTD|LTR|ERVL-MaLR	7270.0	NM_001015099	217558.0	Mm.253264	NM_001015099	ENSMUSG00000035293	G2e3	6030408C04Rik|9030416F18|AW046379|D930034K21Rik|mKIAA1333	G2/M-phase specific E3 ubiquitin ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121348235-4	chr9	121347742	121348742	+	774.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	-18716.0	NM_001357973	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-103856257-6	chr5	103855563	103856563	+	774.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001080798)	TTS (NM_001080798)	55196.0	NM_001359987	246293.0	Mm.179871	NM_178741	ENSMUSG00000029312	Klhl8	2310001P09Rik|D5Ertd431e	kelch-like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5832793-4	chr18	5832319	5833319	+	774.674988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	240172.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	20.5	12.0	14.5	20.5	18.0	18.0
Merged-chr2-71539846-2	chr2	71539346	71540346	+	774.666687	f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-1955.0	NR_002854	111970.0	Mm.4543	NR_002854		Dlx1as	Dix1as|Dlx1os	distal-less homeobox 1, antisense	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81344405-3	chr7	81343921	81344921	+	774.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009092, intron 2 of 4)	intron (NM_009092, intron 2 of 4)	813.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180195327-3	chr1	180194844	180195844	+	774.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023341, intron 1 of 14)	intron (NM_023341, intron 1 of 14)	676.0	NM_023341	67426.0	Mm.38330	NM_023341	ENSMUSG00000026489	Coq8a	4632432J16Rik|AI462003|Adck3|Cabc1|mKIAA0451	coenzyme Q8A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52646688-3	chr13	52646187	52647187	+	774.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001198977, exon 14 of 14)	3' UTR (NM_001198977, exon 14 of 14)	49805.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-62889519-1	chr5	62889019	62890019	+	774.666687	f0_balb.idr	Intergenic	Intergenic	75696.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	3.5	3.0	16.5	3.5	10.5	12.0
Merged-chr18-79324006-3	chr18	79323535	79324535	+	774.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-214644.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-22137971-3	chr3	22137478	22138478	+	774.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	61326.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115054662-3	chr11	115054148	115055148	+	774.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172050, intron 2 of 3)	intron (NM_172050, intron 2 of 3)	-6353.0	NM_199201	382551.0	Mm.424732	NM_199201	ENSMUSG00000069607	Cd300ld3	AY457049|Cd300lh|Clm3|Lmir7|clm-3	CD300 molecule like family member D3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34872590-2	chr6	34872090	34873090	+	774.666687	f1_balb.idr|f1_c57bl6.idr	exon (NM_197986, exon 2 of 2)	exon (NM_197986, exon 2 of 2)	5475.0	NM_199145	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62764240-3	chr4	62763752	62764752	+	774.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90278.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	3.5	7.0	1.0	0.0	2.5	5.0
Merged-chr9-25104897-3	chr9	25104433	25105433	+	774.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46848.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58734770-3	chr15	58734255	58735255	+	774.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	88672.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70647312-2	chr14	70646814	70647814	+	774.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_181345)	TTS (NM_181345)	-5046.0	NM_008004	14171.0	Mm.12814	NM_008004	ENSMUSG00000022101	Fgf17	-	fibroblast growth factor 17	protein-coding	0.0	4.5	1.0	3.5	2.0	0.0
Merged-chr4-147518347-2	chr4	147517847	147518847	+	774.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34930.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-100839682-4	chr10	100839184	100840184	+	774.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98049.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126597771-4	chr8	126597283	126598283	+	774.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4347.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	6.0	0.0	1.0	0.0	0.0	3.5
Merged-chr18-53905838-3	chr18	53905326	53906326	+	774.600037	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152809, intron 3 of 12)	MIR|SINE|MIR	43713.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	9.0	8.0	13.0	6.5	19.0	19.0
Merged-chr4-126252738-3	chr4	126252223	126253223	+	774.599976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145970, intron 1 of 16)	intron (NM_001145970, intron 1 of 16)	3596.0	NM_144941	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	41.0	50.0	40.0	20.0	51.0	25.0
Merged-chr2-49733863-6	chr2	49733256	49734256	+	774.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008449, intron 15 of 25)	intron (NM_008449, intron 15 of 25)	-53930.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88252121-3	chr17	88251631	88252631	+	774.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	126619.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-58540591-3	chr4	58540089	58541089	+	774.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010336, intron 1 of 3)	intron (NM_010336, intron 1 of 3)	12704.0	NM_172989	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	1.0	5.0	0.0	20.0	2.0	0.0
Merged-chr2-103934873-4	chr2	103934379	103935379	+	774.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23116.0	NM_001142337	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0.0	0.0	0.0	0.0	1.5	2.0
Merged-chr17-84102233-2	chr17	84101733	84102733	+	774.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23573.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166179686-2	chr2	166179186	166180186	+	774.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-24003.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-82233757-2	chr9	82233257	82234257	+	774.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	370087.0	NM_175213	75033.0	Mm.335329	NM_175213	ENSMUSG00000043289	Mei4	4930486G11Rik	meiotic double-stranded break formation protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65361716-1	chr9	65361216	65362216	+	774.5	f0_balb.idr	intron (NM_001111145, intron 1 of 6)	intron (NM_001111145, intron 1 of 6)	656.0	NM_001111145	208080.0	Mm.291862	NM_001111145	ENSMUSG00000086228	Ubap1l	Gm514	ubiquitin-associated protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-63031916-2	chr10	63031416	63032416	+	774.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026085, intron 1 of 9)	Lx6|LINE|L1	7404.0	NM_026085	67307.0	Mm.368563	NM_026085	ENSMUSG00000020072	Pbld2	3110049J23Rik|Mawbp	phenazine biosynthesis-like protein domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129600003-3	chr2	129599481	129600481	+	774.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	4519.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	22.5	45.0	36.5	19.5	42.0	29.5
Merged-chr1-58617930-2	chr1	58617430	58618430	+	774.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	31533.0	NM_025597	66495.0	Mm.2033	NM_025597	ENSMUSG00000026032	Ndufb3	2700033I16Rik|CI-B12	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161286929-3	chr1	161286423	161287423	+	774.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35713.0	NM_001303408	11758.0	Mm.186185	NM_007453	ENSMUSG00000026701	Prdx6	1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2	peroxiredoxin 6	protein-coding	2.5	0.0	0.0	0.0	0.5	0.0
Merged-chr2-129342258-3	chr2	129341768	129342768	+	774.5	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27634.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	11.5	35.0	9.0	11.0	13.0	19.0
Merged-chr8-71683287-2	chr8	71682797	71683797	+	774.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190830, intron 13 of 23)	intron (NM_001190830, intron 13 of 23)	-5955.0	NM_013564	16336.0	Mm.476857	NM_013564	ENSMUSG00000079019	Insl3	Rlf|Rlnl	insulin-like 3	protein-coding	0.5	0.0	0.0	0.0	0.0	1.0
Merged-chr4-135242490-4	chr4	135241926	135242926	+	774.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	ORR1F|LTR|ERVL-MaLR	30334.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95550143-2	chr10	95549643	95550643	+	774.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358996, intron 3 of 4)	(CA)n|Simple_repeat|Simple_repeat	9178.0	NR_037212	100526463.0		NR_037212	ENSMUSG00000092867	Mir3058	mir-3058|mmu-mir-3058	microRNA 3058	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123288283-2	chr5	123287783	123288783	+	774.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56165.0	NM_029850	77045.0	Mm.151960	NM_029850	ENSMUSG00000029438	Bcl7a	4432415N06Rik|AI448316	B cell CLL/lymphoma 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5009034-2	chr6	5008531	5009531	+	774.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	105711.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	6.0	13.0	0.0	4.0	8.0	2.5
Merged-chr10-127525003-2	chr10	127524503	127525503	+	774.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_183297)	TTS (NM_183297)	-2559.0	NM_028230	108037.0	Mm.29890	NM_028230	ENSMUSG00000025403	Shmt2	2700043D08Rik|AA408223|AA986903|SHMT	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126753051-2	chr4	126752551	126753551	+	774.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355413)	promoter-TSS (NM_001355413)	378.0	NM_011986	26562.0	Mm.206206	NM_011986	ENSMUSG00000028833	Ncdn	AU042419|MMS10-AE|Ms10ae|mKIAA0607|norbin	neurochondrin	protein-coding	0.0	0.5	1.5	0.0	7.0	3.0
Merged-chr11-100817472-2	chr11	100816972	100817972	+	774.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113563, intron 1 of 18)	intron (NM_001113563, intron 1 of 18)	5098.0	NM_011489	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27004518-2	chr17	27004018	27005018	+	774.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-13517.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-13790599-2	chr2	13790099	13791099	+	774.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145838, intron 2 of 7)	LTR81C|LTR|Gypsy	2921.0	NM_145838	241230.0	Mm.330004	NM_145838	ENSMUSG00000003418	St8sia6	1700007J08Rik|AI314453|AI875066|ST8SiaVI|Siat8f	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-37127762-2	chr14	37127262	37128262	+	774.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359902, intron 5 of 8)	intron (NM_001359902, intron 5 of 8)	7377.0	NM_001199122	66092.0	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-14740210-2	chr1	14739714	14740714	+	774.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	15752.0	NM_001360810	17681.0	Mm.5820	NM_010827	ENSMUSG00000025930	Msc	MyoR|bHLHa22	musculin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120045917-2	chr11	120045354	120046354	+	774.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	1291.0	NM_001198785	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	2.5	10.0	3.0	1.5	5.5	1.5
Merged-chr8-15043027-4	chr8	15042544	15043544	+	774.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037972, exon 2 of 2)	non-coding (NR_037972, exon 2 of 2)	3034.0	NR_037972	434285.0	Mm.334425	NM_001007591	ENSMUSG00000049008	BB014433	-	expressed sequence BB014433	ncRNA	5.0	1.5	0.0	4.0	2.5	0.0
Merged-chr4-42998880-2	chr4	42998380	42999380	+	774.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009503, intron 1 of 16)	PB1D9|SINE|Alu	1627.0	NM_009503	269523.0	Mm.245976	NM_009503	ENSMUSG00000028452	Vcp	3110001E05|CDC48|p97|p97/VCP	valosin containing protein	protein-coding	9.0	9.5	9.5	9.0	9.5	9.5
Merged-chr6-148539869-2	chr6	148539369	148540369	+	774.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74440.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-20847154-1	chr5	20846654	20847654	+	774.5	f0_balb.idr	intron (NM_172992, intron 2 of 17)	intron (NM_172992, intron 2 of 17)	34970.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-22425144-2	chr17	22424644	22425644	+	774.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331197, intron 1 of 5)	RLTR9E|LTR|ERVK	942.0	NM_001331198	74149.0	Mm.30767	NM_198003	ENSMUSG00000071266	Zfp946	1300003B13Rik	zinc finger protein 946	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31292666-2	chr16	31292166	31293166	+	774.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17389.0	NM_025800	66849.0	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|I-2|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	0.0	1.0	0.5	4.5	0.0	0.0
Merged-chr13-34748690-2	chr13	34748190	34749190	+	774.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A1|DNA|hAT-Charlie	9048.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115694621-2	chr11	115694121	115695121	+	774.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	B1_Mur4|SINE|Alu	4913.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-176877918-2	chr1	176877420	176878420	+	774.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 11 of 18)	intron (NM_001357390, intron 11 of 18)	-41787.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	0.0	0.0	3.5	4.0	0.0	3.0
Merged-chr3-37634867-2	chr3	37634367	37635367	+	774.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5080.0	NM_001305441	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-92204952-2	chr17	92204452	92205452	+	774.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-994065.0	NM_001315503	11516.0	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30795515-2	chr2	30795015	30796015	+	774.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_198000)	TTS (NM_198000)	6222.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138138873-2	chr1	138138373	138139373	+	774.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	36253.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-33812946-2	chr1	33812446	33813446	+	774.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359274, intron 2 of 13)	intron (NM_001359274, intron 2 of 13)	1649.0	NM_133817	98403.0	Mm.289103	NM_133817	ENSMUSG00000042197	Zfp451	4930515K21Rik|4933435G09Rik|AI596398|COASTER|Kiaa0576-hp|Znf451|mKIAA1702	zinc finger protein 451	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149806909-3	chr4	149806398	149807398	+	774.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32631.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0.0	0.0	0.5	0.0	2.0	0.5
Merged-chr12-17557024-3	chr12	17556592	17557592	+	774.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12219.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	8.0	9.0	0.0	5.5	13.5	3.0
Merged-chr8-70543239-3	chr8	70542717	70543717	+	774.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	3542.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	47.0	111.0	83.0	64.0	133.0	84.0
Merged-chr2-4447489-3	chr2	4446979	4447979	+	774.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	46503.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34108471-3	chr2	34107956	34108956	+	774.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_130173)	promoter-TSS (NR_130173)	-721.0	NR_130173	329387.0	Mm.125817	NR_130173	ENSMUSG00000087461	C230014O12Rik	-	RIKEN cDNA C230014O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-75369426-2	chr9	75368927	75369927	+	774.416687	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	21669.0	NM_013479	12049.0	Mm.25988	NM_013479	ENSMUSG00000032191	Bcl2l10	AA420380|AU023065|Boo|C85687|Diva	Bcl2-like 10	protein-coding	1.5	0.0	0.0	1.5	0.0	0.0
Merged-chr9-40806573-4	chr9	40806085	40807085	+	774.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5312.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	19.0	84.0	45.5	26.5	50.0	37.5
Merged-chr10-87862210-4	chr10	87861713	87862713	+	774.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111274, intron 1 of 4)	intron (NM_001111274, intron 1 of 4)	1102.0	NM_001111276	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46499213-2	chr4	46498713	46499713	+	774.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_053179, intron 3 of 5)	intron (NM_053179, intron 3 of 5)	9884.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122763803-5	chr5	122763435	122764435	+	774.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145358, exon 2 of 16)	exon (NM_145358, exon 2 of 16)	15475.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156344962-3	chr2	156344445	156345445	+	774.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027585, intron 8 of 12)	intron (NM_027585, intron 8 of 12)	-32241.0	NM_020255	19018.0	Mm.389346	NM_020255	ENSMUSG00000046229	Scand1	2310003H23Rik|Leap1|PGC-2|Ppargc2	SCAN domain-containing 1	protein-coding	0.5	1.0	9.5	24.5	0.0	3.0
Merged-chr15-59568812-4	chr15	59568321	59569321	+	774.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-79833.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	0.0	3.0	0.0	1.5	0.5
Merged-chr17-56479550-4	chr17	56479038	56480038	+	774.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3058.0	NM_011218	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77626909-4	chr10	77626392	77627392	+	774.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019803, intron 1 of 5)	intron (NM_019803, intron 1 of 5)	4571.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139042543-3	chr5	139042047	139043047	+	774.355591	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359099, intron 7 of 10)	intron (NM_001359099, intron 7 of 10)	-47594.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100166404-4	chr12	100165910	100166910	+	774.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER77B|LTR|ERVL	-6757.0	NM_183155	217827.0	Mm.224076	NM_183155	ENSMUSG00000021179	Nrde2	6720454P05Rik	nrde-2 necessary for RNA interference, domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132564961-2	chr4	132564461	132565461	+	774.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081211, intron 1 of 1)	B1F|SINE|Alu	894.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	4.5	0.5	4.5	1.0	7.5	6.5
Merged-chr2-60928478-2	chr2	60927978	60928978	+	774.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	34726.0	NM_020296	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-142024824-2	chr4	142024324	142025324	+	774.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_131014, intron 1 of 1)	intron (NR_131014, intron 1 of 1)	6926.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-88342485-2	chr16	88341985	88342985	+	774.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-52220.0	NM_001346964	14805.0	Mm.5134	NM_010348	ENSMUSG00000022935	Grik1	A830007B11Rik|D16Ium24|D16Ium24e|GluK1|GluK5|Glur-5|Glur5|Glurbeta1	glutamate receptor, ionotropic, kainate 1	protein-coding	2.5	0.0	0.0	2.0	0.0	0.0
Merged-chr17-65839759-2	chr17	65839259	65840259	+	774.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_152099, intron 20 of 20)	MTB_Mm|LTR|ERVL-MaLR	45164.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	1.5	0.0	1.0	0.0	0.0	0.0
Merged-chr10-127322908-5	chr10	127322424	127323424	+	774.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359656)	promoter-TSS (NM_001359656)	-783.0	NM_146011	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	0.0	2.0	0.0	0.0	0.0	0.0
Merged-chr2-43784012-4	chr2	43783547	43784547	+	774.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 2 of 14)	intron (NM_001301831, intron 2 of 14)	35223.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21631832-4	chr16	21631332	21632332	+	774.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 45 of 46)	intron (NM_001081366, intron 45 of 46)	62833.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-50083600-2	chr18	50083100	50084100	+	774.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_134131, intron 1 of 1)	intron (NM_134131, intron 1 of 1)	-29938.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38954844-3	chr6	38954365	38955365	+	774.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	(CACCAT)n|Simple_repeat|Simple_repeat	35879.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129546077-1	chr6	129545577	129546577	+	774.333313	f0_balb.idr	Intergenic	Intergenic	-12793.0	NR_045270	100504641.0	Mm.398286	NR_045270	ENSMUSG00000097675	1700101I11Rik	-	RIKEN cDNA 1700101I11 gene	ncRNA	0.0	0.0	1.0	0.0	1.0	13.0
Merged-chr6-56384427-3	chr6	56383922	56384922	+	774.299988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14788.0	NM_001159955	18575.0	Mm.5145	NM_011054	ENSMUSG00000004347	Pde1c	-	phosphodiesterase 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9137308-2	chr19	9136808	9137808	+	774.299988	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12B|LTR|ERVK	-1742.0	NM_025610	66514.0	Mm.272847	NM_025610	ENSMUSG00000024654	Asrgl1	2410004D18Rik|ALP|ALP1|AU040643|AW060375	asparaginase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51540063-3	chr3	51539529	51540529	+	774.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080793, intron 3 of 7)	intron (NM_080793, intron 3 of 7)	-19728.0	NR_033624	100039684.0	Mm.387178	NR_033624		5031434O11Rik	AI481280|Gm2370	RIKEN cDNA 5031434O11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32643867-4	chr16	32643368	32644368	+	774.270874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016788)	promoter-TSS (NM_016788)	-775.0	NM_001110147	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	3.0
Merged-chr3-154572544-4	chr3	154571984	154572984	+	774.270813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24227.0	NM_009968	12972.0	Mm.374855	NM_009968	ENSMUSG00000028199	Cryz	Sez9	crystallin, zeta	protein-coding	0.0	3.0	5.0	2.0	9.5	3.0
Merged-chr17-78679624-2	chr17	78679127	78680127	+	774.25	f0_balb.idr|f1_balb.idr	intron (NM_011500, intron 6 of 17)	Lx10|LINE|L1	56933.0	NM_011500	268980.0	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	12.5	7.0	7.0	20.0	14.5	15.5
Merged-chr13-60702817-2	chr13	60702317	60703317	+	774.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	intron (NM_134062, intron 3 of 26)	83547.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	9.5	7.5	7.0	10.0	6.5	8.0
Merged-chr14-34548673-2	chr14	34548173	34549173	+	774.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039071, intron 8 of 12)	intron (NM_001039071, intron 8 of 12)	-25872.0	NM_030062	78243.0	Mm.117483	NM_030062	ENSMUSG00000021797	9230112D13Rik	-	RIKEN cDNA 9230112D13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116169242-4	chr4	116168744	116169744	+	774.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1646.0	NM_133681	66805.0	Mm.45994	NM_133681	ENSMUSG00000028699	Tspan1	9030418M05Rik	tetraspanin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-88193758-2	chr11	88193208	88194208	+	774.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291270)	promoter-TSS (NM_001291270)	-398.0	NM_001291270	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	5.5	0.0	0.0	2.5	1.5	0.0
Merged-chr4-53060794-2	chr4	53060294	53061294	+	774.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 32 of 49)	intron (NM_013454, intron 32 of 49)	48914.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-143751412-4	chr6	143750898	143751898	+	774.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100110.0	NR_045732	73425.0	Mm.417844	NR_045732	ENSMUSG00000086887	1700060C16Rik	-	RIKEN cDNA 1700060C16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106498786-2	chr8	106498286	106499286	+	774.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F|LINE|L1	-12066.0	NM_007665	12560.0	Mm.4658	NM_007665	ENSMUSG00000061048	Cdh3	AI385538|Cadp|Cdhp|P-cadherin|Pcad	cadherin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44439344-2	chr11	44438852	44439852	+	774.25	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	31196.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	26.5	46.0	43.0	8.5	7.5	10.0
Merged-chr12-112130378-4	chr12	112129879	112130879	+	774.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029590)	promoter-TSS (NR_029590)	-501.0	NR_029590	387199.0		NR_029590	ENSMUSG00000065574	Mir203	Mirn203|mir-203|mmu-mir-203	microRNA 203	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-9079344-2	chr15	9078844	9079844	+	774.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040395, intron 1 of 12)	intron (NM_001040395, intron 1 of 12)	8084.0	NM_001040395	68646.0	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-85042737-4	chr15	85042230	85043230	+	774.237488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356616)	promoter-TSS (NM_001356616)	-12.0	NM_001356616	73225.0	Mm.247535	NM_133750	ENSMUSG00000022434	Fam118a	-	family with sequence similarity 118, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-80992137-3	chr8	80991637	80992637	+	774.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027554, intron 6 of 9)	intron (NM_027554, intron 6 of 9)	22769.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	4.5	19.0	3.5	0.0	4.5	2.0
Merged-chr10-127188754-3	chr10	127188252	127189252	+	774.216675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358557)	promoter-TSS (NM_001358557)	20.0	NM_001358557	52666.0	Mm.272230	NM_028027	ENSMUSG00000019467	Arhgef25	2410008H17Rik|D10Ertd610e|GEFT	Rho guanine nucleotide exchange factor (GEF) 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30616944-4	chr14	30616445	30617445	+	774.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	-6635.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	2.0	8.0	9.0	6.5	1.5	1.5
Merged-chr10-51450607-2	chr10	51450107	51451107	+	774.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-30005.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140755563-3	chr5	140755031	140756031	+	774.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31404.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-47069487-2	chr7	47068987	47069987	+	774.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13737.0	NR_106023	102465639.0		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32034267-3	chr9	32033737	32034737	+	774.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81899.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97971582-4	chr6	97971084	97972084	+	774.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001178049, intron 2 of 9)	intron (NM_001178049, intron 2 of 9)	-20199.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	13.5	32.5	25.0	2.5	40.5	30.0
Merged-chr15-31564828-2	chr15	31564328	31565328	+	774.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4005.0	NM_181588	69574.0	Mm.28108	NM_181588	ENSMUSG00000022235	Cmbl	2310016A09Rik	carboxymethylenebutenolidase-like (Pseudomonas)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171232580-2	chr1	171232080	171233080	+	774.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_010185, intron 1 of 4)	B1_Mus1|SINE|Alu	1769.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	59.5	147.5	76.5	47.0	155.0	98.0
Merged-chr11-86996560-4	chr11	86996041	86997041	+	774.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2779.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-75822643-3	chr13	75822149	75823149	+	774.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17236.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	10.5	11.5	7.0	9.0	2.0	9.0
Merged-chr5-121122670-3	chr5	121122126	121123126	+	774.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	68771.0	NM_001109992	19247.0	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	5.0	15.0	8.0	3.0	3.0	0.0
Merged-chr8-77509241-3	chr8	77508750	77509750	+	774.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 1 of 22)	intron (NM_030113, intron 1 of 22)	-7806.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78330171-3	chr15	78329675	78330675	+	774.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358854, intron 2 of 14)	intron (NM_001358854, intron 2 of 14)	4185.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-48937700-3	chr7	48937184	48938184	+	774.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21389.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7832070-2	chr9	7831570	7832570	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007465, intron 2 of 7)	L1_Mus1|LINE|L1	4736.0	NM_001291503	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-109348288-1	chr13	109347788	109348788	+	774.0	f0_balb.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	23544.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.0	6.0	0.0	0.0	0.0	0.0
Merged-chr5-135459719-3	chr5	135459260	135460260	+	774.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 2 of 30)	intron (NM_146001, intron 2 of 30)	-65214.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11442743-3	chr16	11442237	11443237	+	774.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 11 of 20)	ORR1B1|LTR|ERVL-MaLR	37089.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34372401-2	chr18	34371901	34372901	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007874, intron 2 of 4)	intron (NM_007874, intron 2 of 4)	1014.0	NM_007874	13476.0	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-115492640-3	chr9	115492143	115493143	+	774.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	110824.0	NR_130329	100316675.0		NR_130329	ENSMUSG00000080409	Mir467h	Mirn467h|mmu-mir-467h	microRNA 467h	ncRNA	10.5	6.0	4.0	0.0	2.5	1.0
Merged-chr10-14391149-1	chr10	14390649	14391649	+	774.0	f0_balb.idr	Intergenic	Intergenic	153887.0	NM_001002268	215798.0	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	0.0	15.5	1.0	0.0	4.0	4.5
Merged-chr19-42000902-1	chr19	42000402	42001402	+	774.0	f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	19139.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	30.0	69.0	78.0	38.5	84.0	65.0
Merged-chr8-70603947-1	chr8	70603447	70604447	+	774.0	f1_balb.idr	intron (NM_133772, intron 1 of 16)	ORR1A3-int|LTR|ERVL-MaLR	4367.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	4.5	25.0	11.0	7.5	10.0	4.5
Merged-chr16-77369969-3	chr16	77369473	77370473	+	774.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015543, intron 2 of 4)	intron (NR_015543, intron 2 of 4)	40645.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92341884-2	chr5	92341382	92342382	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	L1_Mus2|LINE|L1	7007.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	7.0	0.0	3.0	5.0	0.0	0.5
Merged-chr1-45819153-1	chr1	45818653	45819653	+	774.0	f0_balb.idr	intron (NM_028599, intron 16 of 20)	intron (NM_028599, intron 16 of 20)	23987.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-109230556-2	chr13	109230056	109231056	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-94188.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101282656-2	chr15	101282156	101283156	+	774.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1645.0	NM_026566	68118.0	Mm.482360	NM_026566	ENSMUSG00000037204	Atg101	9430023L20Rik|AA407441|AU022967	autophagy related 101	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84149218-3	chr1	84148737	84149737	+	774.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003948, intron 2 of 2)	intron (NM_001003948, intron 2 of 2)	69724.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53859924-2	chr11	53859424	53860424	+	774.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033332)	promoter-TSS (NR_033332)	-668.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80037406-2	chr10	80036906	80037906	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025554, intron 2 of 6)	intron (NM_025554, intron 2 of 6)	2253.0	NM_025554	66420.0	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-4267287-2	chr9	4266787	4267787	+	774.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	42207.0	NM_026276	67618.0	Mm.33970	NM_026276	ENSMUSG00000025894	Aasdhppt	2010309J24Rik|2810407B07Rik|AASD-PPT|CGI-80|LYS2|LYS5	aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100680228-2	chr5	100679723	100680723	+	774.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_152803, exon 12 of 12)	3' UTR (NM_152803, exon 12 of 12)	-5967.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-123116485-2	chr6	123115985	123116985	+	774.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-6205.0	NM_001170332	26888.0	Mm.47384	NM_011999	ENSMUSG00000030148	Clec4a2	Clec4a|Clecsf6|DCIR|Dcir1	C-type lectin domain family 4, member a2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143530886-2	chr5	143530386	143531386	+	774.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2855.0	NM_001347530	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49051625-2	chr11	49051125	49052125	+	774.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173434).2	promoter-TSS (NM_173434).2	-383.0	NM_173434	245240.0	Mm.452996	NM_173434	ENSMUSG00000069892	9930111J21Rik2	9930111J21Rik|Irgb5	RIKEN cDNA 9930111J21 gene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60627629-1	chr13	60627129	60628129	+	774.0	f0_c57.idr	intron (NM_134062, intron 2 of 26)	B4A|SINE|B4	25418.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-92725618-3	chr7	92725120	92726120	+	774.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15839.0	NR_015510	666737.0	Mm.473620	NR_015510	ENSMUSG00000074024	4632427E13Rik	AU015482	RIKEN cDNA 4632427E13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53060202-2	chr4	53059702	53060702	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 33 of 49)	intron (NM_013454, intron 33 of 49)	48322.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79024006-2	chr11	79023506	79024506	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045873, intron 1 of 5)	intron (NR_045873, intron 1 of 5)	409.0	NR_045873	790910.0	Mm.440410	NR_045873		Gm11201	-	predicted gene 11201	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26241356-2	chr17	26240856	26241856	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	2886.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	18.5	44.5	38.0	7.0	24.5	19.0
Merged-chr17-35830595-1	chr17	35830095	35831095	+	774.0	f1_c57bl6.idr	intron (NM_008027, intron 10 of 12)	RSINE1|SINE|B4	7238.0	NM_008027	14251.0	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr11-53890509-2	chr11	53890009	53891009	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011396, intron 1 of 9)	intron (NM_011396, intron 1 of 9)	1194.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103848452-1	chr3	103847952	103848952	+	774.0	f1_c57bl6.idr	intron (NM_001142960, intron 3 of 3)	RLTR22_Mus|LTR|ERVK	-11343.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	7.5	11.0	2.5	20.0	21.0	3.5
Merged-chr5-64612237-3	chr5	64611702	64612702	+	774.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1503.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	4.0	9.5	9.0	5.0	12.5	4.5
Merged-chr7-99482129-1	chr7	99481629	99482629	+	774.0	f1_balb.idr	TTS (NR_002172)	TTS (NR_002172)	803.0	NR_002172	449630.0	Mm.454449	NR_002172	ENSMUSG00000065822	Snord15a	EG449630|Gm5774|RNU15A|Rnu15-a|U15A	small nucleolar RNA, C/D box 15A	snoRNA	6.5	3.5	7.0	5.0	22.5	12.5
Merged-chr8-70602466-1	chr8	70601966	70602966	+	774.0	f1_c57bl6.idr	intron (NM_133772, intron 2 of 16)	intron (NM_133772, intron 2 of 16)	5848.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	1.5	1.0	0.0	7.0	0.0	2.5
Merged-chr13-6890482-2	chr13	6889982	6890982	+	774.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13C2|LTR|ERVK	-241711.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-62979777-2	chr14	62979277	62980277	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037751, intron 1 of 1)	intron (NM_001037751, intron 1 of 1)	4733.0	NM_001037751	432867.0	Mm.99387	NM_001037751	ENSMUSG00000075574	Defb48	Defb42|EG432867	defensin beta 48	protein-coding	3.5	0.0	0.0	0.0	2.5	1.0
Merged-chr13-65187203-1	chr13	65186703	65187703	+	774.0	f1_c57bl6.idr	intron (NM_175290, intron 6 of 9)	RLTR26|LTR|ERVK	18513.0	NM_175290	97895.0	Mm.315815	NM_175290	ENSMUSG00000032999	Nlrp4f	C330026N02Rik|C86045|Nalp-kappa|Nalp4f	NLR family, pyrin domain containing 4F	protein-coding	2.0	4.0	1.0	6.0	2.5	1.5
Merged-chr18-46604963-3	chr18	46604459	46605459	+	774.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010120, intron 2 of 2)	intron (NM_010120, intron 2 of 2)	7255.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25131018-3	chr10	25130523	25131523	+	774.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69147.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8741699-2	chr10	8741199	8742199	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 13 of 19)	intron (NM_175155, intron 13 of 19)	144371.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	13.5	9.5	10.0	8.0	5.5	7.0
Merged-chr14-120912320-2	chr14	120911820	120912820	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023579, intron 1 of 25)	intron (NM_023579, intron 1 of 25)	1126.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23890462-1	chr18	23889962	23890962	+	774.0	f0_balb.idr	intron (NM_001162941, intron 7 of 7)	intron (NM_001162941, intron 7 of 7)	-64226.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-22743037-1	chr2	22742537	22743537	+	774.0	f0_balb.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-31290.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35162303-2	chr17	35161803	35162803	+	774.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_020027, exon 3 of 31)	exon (NM_020027, exon 3 of 31)	2574.0	NM_001199044	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93246698-1	chr10	93246198	93247198	+	774.0	f1_balb.idr	TTS (NM_013508)	TTS (NM_013508)	64461.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	0.0	5.0	2.5	0.0	0.5	1.5
Merged-chr7-19026172-2	chr7	19025672	19026672	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360713, intron 1 of 22)	RMER17C2|LTR|ERVK	1795.0	NM_026605	68188.0	Mm.130902	NM_026605	ENSMUSG00000023118	Sympk	1500016F02Rik|4632415H16Rik|AA125406|AI449890|SPK|SYM	symplekin	protein-coding	0.0	0.0	1.5	0.0	0.0	1.0
Merged-chr5-134606541-2	chr5	134606041	134607041	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020044, intron 5 of 12)	intron (NM_020044, intron 5 of 12)	8484.0	NM_022964	56743.0	Mm.391375	NM_020044	ENSMUSG00000040751	Lat2	AW125574|LAB|NTAL|WSCR5|Wbscr15|Wbscr5	linker for activation of T cells family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21453054-2	chr13	21452554	21453554	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347491, intron 1 of 5)	L2a|LINE|L2	673.0	NM_001013786	432731.0	Mm.390557	NM_001013786	ENSMUSG00000022228	Zscan26	BC068174|Zfp187|Znf187	zinc finger and SCAN domain containing 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-49412854-1	chr6	49412354	49413354	+	774.0	f1_c57bl6.idr	intron (NM_029916, intron 6 of 23)	RMER15-int|LTR|ERVL	17250.0	NM_029916	77485.0	Mm.128054	NM_029916	ENSMUSG00000023403	Stk31	C330007K24Rik	serine threonine kinase 31	protein-coding	3.5	2.0	5.5	0.0	0.0	0.0
Merged-chr12-111708782-2	chr12	111708282	111709282	+	774.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027404)	TTS (NM_027404)	4171.0	NM_001324481	70369.0	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127801275-2	chr7	127800775	127801775	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040684, intron 2 of 6)	intron (NM_001040684, intron 2 of 6)	666.0	NM_001040684	101502.0	Mm.157103	NM_133943	ENSMUSG00000042289	Hsd3b7	AI195443|BB098564	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80793892-2	chr10	80793392	80794392	+	774.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_199322, exon 28 of 28)	3' UTR (NM_199322, exon 28 of 28)	4734.0	NM_023900	78670.0	Mm.41479	NM_023900	ENSMUSG00000035278	Plekhj1	9530063M10Rik	pleckstrin homology domain containing, family J member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101779424-2	chr4	101778924	101779924	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146146, intron 13 of 18)	intron (NM_146146, intron 13 of 18)	62017.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35461494-6	chr2	35461019	35462019	+	773.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145821)	promoter-TSS (NM_001145821)	-70.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146800691-3	chr3	146800201	146801201	+	773.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011100, intron 1 of 9)	MTD|LTR|ERVL-MaLR	12245.0	NM_011100	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29826831-2	chr19	29826331	29827331	+	773.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13857.0	NM_177721	240614.0	Mm.125503	NM_177721	ENSMUSG00000074909	Ranbp6	C630001B19	RAN binding protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38691388-4	chr6	38690886	38691886	+	773.916626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28317.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184169417-4	chr1	184168923	184169923	+	773.912476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	135042.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136835648-3	chr6	136835181	136836181	+	773.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039558)	promoter-TSS (NM_001039558)	-231.0	NM_001039558	654818.0	Mm.386899	NM_001039558	ENSMUSG00000043298	Smco3	C030030A07Rik	single-pass membrane protein with coiled-coil domains 3	protein-coding	3.0	4.5	4.5	5.5	25.0	17.5
Merged-chr13-28607870-3	chr13	28607382	28608382	+	773.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045054, intron 6 of 7)	intron (NR_045054, intron 6 of 7)	102991.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27029970-4	chr14	27029624	27030624	+	773.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8877.0	NM_134437	171463.0	Mm.206726	NM_027265	ENSMUSG00000040717	Il17rd	2810004A10Rik|AI428510|Sef|Sef-S	interleukin 17 receptor D	protein-coding	0.0	3.0	1.0	3.0	0.0	0.0
Merged-chr9-73091976-3	chr9	73091504	73092504	+	773.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301230, intron 6 of 6)	intron (NM_001301230, intron 6 of 6)	-10394.0	NM_025890	66991.0	Mm.471745	NM_025890	ENSMUSG00000092622	Khdc3	2410004A20Rik|AI467128|FILIA|OEEP48	KH domain containing 3, subcortical maternal complex member	protein-coding	0.0	10.5	1.0	4.0	11.5	6.5
Merged-chr5-66129002-3	chr5	66128513	66129513	+	773.8555299999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	Lx9|LINE|L1	21965.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	9.5	41.0	42.5	18.5	42.0	20.5
Merged-chr10-120231039-2	chr10	120230539	120231539	+	773.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025431, intron 2 of 2)	intron (NM_025431, intron 2 of 2)	3979.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84450885-2	chr10	84450385	84451385	+	773.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10414.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8411391-4	chr15	8410878	8411878	+	773.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201232, intron 1 of 45)	intron (NM_201232, intron 1 of 45)	33085.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7068823-2	chr10	7068323	7069323	+	773.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-45638.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68092178-2	chr11	68091678	68092678	+	773.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_018768, intron 6 of 7)	intron (NM_018768, intron 6 of 7)	125720.0	NM_018768	55943.0	Mm.3973	NM_018768	ENSMUSG00000020903	Stx8	0610007H08Rik|1110002H11Rik|4930571E13Rik|CARB	syntaxin 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30769484-3	chr2	30769011	30770011	+	773.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	32226.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77835945-4	chr9	77835444	77836444	+	773.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81409.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10698513-3	chr19	10698012	10699012	+	773.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	intron (NM_001361958, intron 1 of 4)	-2256.0	NM_001361964	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12572815-3	chr19	12572326	12573326	+	773.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346545)	promoter-TSS (NM_001346545)	-684.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	67.0	143.5	81.5	37.0	96.0	49.5
Merged-chr2-148575670-4	chr2	148575174	148576174	+	773.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96941.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29370730-3	chr19	29370234	29371234	+	773.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 1 of 6)	B2_Mm2|SINE|B2	3296.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121602067-4	chr5	121601560	121602560	+	773.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178799, intron 8 of 10)	intron (NM_178799, intron 8 of 10)	-8236.0	NM_001308450	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78429916-2	chr10	78429416	78430416	+	773.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4246.0	NM_007793	13014.0	Mm.6095	NM_007793	ENSMUSG00000005054	Cstb	AA960480|Stfb	cystatin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-8744731-4	chr13	8744241	8745241	+	773.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110345, intron 8 of 10)	intron (NR_110345, intron 8 of 10)	126303.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140336479-2	chr5	140335979	140336979	+	773.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356584, intron 4 of 4)	intron (NM_001356584, intron 4 of 4)	4523.0	NM_001356584	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134172097-1	chr6	134171597	134172597	+	773.75	f0_balb.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	136397.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	1.0	15.5	3.0	7.5	8.5	12.5
Merged-chr7-19663955-2	chr7	19663455	19664455	+	773.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_019649, intron 1 of 13)	intron (NM_019649, intron 1 of 13)	1075.0	NM_019649	56457.0	Mm.290960	NM_019649	ENSMUSG00000002981	Clptm1	HS9|N14	cleft lip and palate associated transmembrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170219764-2	chr2	170219264	170220264	+	773.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77089.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28298868-3	chr7	28298295	28299295	+	773.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007866, intron 4 of 8)	intron (NM_007866, intron 4 of 8)	2990.0	NM_007866	13389.0	Mm.12896	NM_007866	ENSMUSG00000003436	Dll3	pu|pudgy	delta like canonical Notch ligand 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120949467-2	chr11	120948967	120949967	+	773.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038654, intron 1 of 4)	CpG	400.0	NM_001038654	80879.0	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80899229-2	chr10	80898729	80899729	+	773.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013895)	TTS (NM_013895)	1740.0	NM_013895	30055.0	Mm.142132	NM_013895	ENSMUSG00000020219	Timm13	D10Ertd378e|Tim9|Timm9	translocase of inner mitochondrial membrane 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131030020-2	chr1	131029520	131030520	+	773.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10175.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-133650254-2	chr3	133649754	133650754	+	773.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105864.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-29713062-2	chr12	29712573	29713573	+	773.708374	f0_c57.idr|f1_c57bl6.idr	intron (NM_001361657, intron 3 of 24)	intron (NM_001361657, intron 3 of 24)	-26628.0	NR_046080	328075.0	Mm.447832	NR_046080	ENSMUSG00000112663	C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA	70.0	174.5	132.5	21.0	43.0	29.0
Merged-chr6-83838398-4	chr6	83837891	83838891	+	773.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-6650.0	NM_146169	232164.0	Mm.404420	NM_146169	ENSMUSG00000045896	Paip2b	-	poly(A) binding protein interacting protein 2B	protein-coding	1.5	14.5	7.5	1.5	14.5	9.0
Merged-chr10-60697191-4	chr10	60696697	60697697	+	773.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045556)	promoter-TSS (NR_045556)	-707.0	NM_023370	22295.0	Mm.440327	NM_023370	ENSMUSG00000012819	Cdh23	4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v	cadherin 23 (otocadherin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54987882-10	chr18	54987357	54988357	+	773.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175751, exon 2 of 10)	exon (NM_175751, exon 2 of 10)	2323.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79610412-3	chr11	79609890	79610890	+	773.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003283, intron 2 of 2)	intron (NR_003283, intron 2 of 2)	12773.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51202922-1	chr13	51202422	51203422	+	773.666687	f0_balb.idr	non-coding (NR_132443, exon 1 of 1)	non-coding (NR_132443, exon 1 of 1)	144.0	NR_132443	667728.0		NR_132443		Hist1h2al	EG667728	histone cluster 1, H2al	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32244242-3	chr16	32243821	32244821	+	773.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173439, intron 1 of 2)	intron (NM_173439, intron 1 of 2)	2704.0	NM_173439	268882.0	Mm.256137	NM_173439	ENSMUSG00000035764	Fbxo45	2610017J04Rik|AI463119|BC026799	F-box protein 45	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25151379-3	chr10	25150873	25151873	+	773.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48797.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-151742437-3	chr3	151741952	151742952	+	773.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133871, intron 5 of 7)	RMER20B|LTR|ERVK	7507.0	NM_133871	99899.0	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.0	1.0	5.5	5.0	7.5	0.0
Merged-chr7-110840975-2	chr7	110840475	110841475	+	773.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_025999, intron 1 of 5)	intron (NM_025999, intron 1 of 5)	3406.0	NM_025999	67150.0	Mm.96867	NM_025999	ENSMUSG00000030788	Rnf141	2610110L04Rik|AA792898|AU022812|ZFP36|ZNF230	ring finger protein 141	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45699732-2	chr7	45699231	45700231	+	773.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009800)	promoter-TSS (NM_009800)	-236.0	NM_009800	12348.0	Mm.27736	NM_009800	ENSMUSG00000003273	Car11	Ca11	carbonic anhydrase 11	protein-coding	3.0	1.0	0.0	1.5	1.0	1.0
Merged-chr4-148901668-2	chr4	148901168	148902168	+	773.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_027195, intron 3 of 15)	CpG	50654.0	NR_154553	108168987.0	Mm.393596	NR_154553		Gm13205	AA408865	predicted gene 13205	ncRNA	0.5	6.5	0.5	6.0	0.0	0.5
Merged-chr18-46335951-2	chr18	46335451	46336451	+	773.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-24023.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30148589-4	chr5	30148080	30149080	+	773.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178878, intron 1 of 19)	ID4_|SINE|ID	6400.0	NM_178878	97212.0	Mm.200497	NM_178878	ENSMUSG00000025745	Hadha	C77020|Mtpa	hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-13531701-4	chr1	13531186	13532186	+	773.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58224.0	NM_028173	72265.0	Mm.28765	NM_028173	ENSMUSG00000025935	Tram1	1810049E02Rik|TRAMP	translocating chain-associating membrane protein 1	protein-coding	0.0	0.0	2.0	0.0	0.0	0.5
Merged-chr15-77799647-4	chr15	77799155	77800155	+	773.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 3 of 40)	intron (NM_022410, intron 3 of 40)	42520.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87215597-4	chr17	87215100	87216100	+	773.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20658.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	2.5	17.5	4.5	2.0	4.5	4.5
Merged-chr18-24145268-4	chr18	24144764	24145764	+	773.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23445.0	NM_172625	225280.0	Mm.258973	NM_172625	ENSMUSG00000047989	Ino80c	D030070L09Rik	INO80 complex subunit C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67462732-3	chr7	67462224	67463224	+	773.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89866.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	117.0	232.5	186.0	156.0	242.0	162.0
Merged-chr7-99433058-3	chr7	99432555	99433555	+	773.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362168, intron 4 of 17)	intron (NM_001362168, intron 4 of 17)	-32949.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	3.0	1.0	0.5	0.0	0.0	6.5
Merged-chr11-51356580-3	chr11	51356080	51357080	+	773.599976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153393, intron 2 of 28)	intron (NM_153393, intron 2 of 28)	66660.0	NM_153393	237759.0	Mm.154093	NM_153393	ENSMUSG00000063564	Col23a1	2810458L13Rik|AI429655	collagen, type XXIII, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123653795-4	chr8	123653290	123654290	+	773.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133955)	promoter-TSS (NM_133955)	-139.0	NM_133955	69581.0	Mm.168257	NM_133955	ENSMUSG00000039960	Rhou	2310026M05Rik|AI182090|Arhu|CDC42L1|G28K|WRCH-1|WRCH1|mG28K	ras homolog family member U	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108331420-3	chr6	108330926	108331926	+	773.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 4 of 61)	intron (NM_010585, intron 4 of 61)	118330.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	8.5	11.0	10.5	3.0	7.0	11.0
Merged-chr11-54736976-3	chr11	54736438	54737438	+	773.549988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178626, intron 3 of 5)	intron (NM_178626, intron 3 of 5)	50765.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-62707143-3	chr1	62706656	62707656	+	773.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 1 of 16)	intron (NM_001077404, intron 1 of 16)	3839.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5332503-2	chr18	5332003	5333003	+	773.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360447, intron 1 of 4)	intron (NM_001360447, intron 1 of 4)	1936.0	NM_178722	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71126967-2	chr17	71126467	71127467	+	773.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010867)	TTS (NM_010867)	-56565.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57124086-2	chr6	57123586	57124586	+	773.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	10661.0	NM_053231	113858.0	Mm.436285	NM_053231	ENSMUSG00000115181	Vmn1r10	V1rc1	vomeronasal 1 receptor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9933922-2	chr19	9933422	9934422	+	773.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34389.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.0	1.0	0.0	0.0	1.0	0.0
Merged-chr16-11345424-3	chr16	11344933	11345933	+	773.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 1 of 20)	intron (NM_028964, intron 1 of 20)	22529.0	NM_028964	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-76098009-2	chr13	76097509	76098509	+	773.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081352)	promoter-TSS (NM_001081352)	651.0	NM_001360843	77041.0	Mm.196399	NM_029847	ENSMUSG00000021592	Arsk	2810429K17Rik|4833414G15Rik	arylsulfatase K	protein-coding	2.0	51.0	19.5	28.0	36.5	26.0
Merged-chr15-6412217-2	chr15	6411717	6412717	+	773.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	B1F|SINE|Alu	25469.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70152646-2	chr8	70152161	70153161	+	773.5	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_001045484)	promoter-TSS (NM_001045484)	-100.0	NM_001045484	17259.0	Mm.432505	NM_008578	ENSMUSG00000079033	Mef2b	AI451606	myocyte enhancer factor 2B	protein-coding	1.0	1.0	1.5	2.5	1.0	1.5
Merged-chr11-70604683-2	chr11	70604183	70605183	+	773.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 11 of 30)	intron (NM_016713, intron 11 of 30)	-11211.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30715187-2	chr7	30714687	30715687	+	773.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018731, intron 5 of 21)	intron (NM_018731, intron 5 of 21)	2978.0	NM_001290627	11944.0	Mm.12821	NM_018731	ENSMUSG00000005553	Atp4a	-	ATPase, H+/K+ exchanging, gastric, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17013332-2	chr16	17012832	17013832	+	773.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038663, intron 1 of 7)	Lx8|LINE|L1	29950.0	NM_001038663	26413.0	Mm.196581	NM_011949	ENSMUSG00000063358	Mapk1	9030612K14Rik|AA407128|AU018647|C78273|ERK|Erk2|MAPK2|PRKM2|Prkm1|p41mapk|p42mapk	mitogen-activated protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56738562-2	chr19	56738062	56739062	+	773.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16190.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42580419-2	chr10	42579919	42580919	+	773.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_152229, intron 1 of 8)	intron (NM_152229, intron 1 of 8)	3169.0	NM_152229	21907.0	Mm.287100	NM_152229	ENSMUSG00000019803	Nr2e1	Mtl1|Mtll|TLL|Tlx|XTLL|fierce|frc|tailless	nuclear receptor subfamily 2, group E, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3124672-2	chr11	3124194	3125194	+	773.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_003517, intron 1 of 6)	intron (NR_003517, intron 1 of 6)	673.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32057290-2	chr4	32056790	32057790	+	773.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93183.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	0.0	1.0	3.5	3.5	0.5	5.0
Merged-chr15-78171817-2	chr15	78171317	78172317	+	773.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025931, intron 1 of 6)	intron (NM_025931, intron 1 of 6)	2291.0	NM_025931	67042.0	Mm.30191	NM_025931	ENSMUSG00000016637	Ift27	2600013G09Rik|Rabl4	intraflagellar transport 27	protein-coding	0.0	5.0	1.0	2.5	3.5	5.5
Merged-chr8-41283839-4	chr8	41283344	41284344	+	773.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023662, intron 16 of 37)	intron (NM_023662, intron 16 of 37)	44085.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	15.5	29.5	43.5	6.5	22.0	11.0
Merged-chr9-106890641-2	chr9	106890129	106891129	+	773.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029103, intron 2 of 3)	intron (NM_029103, intron 2 of 3)	1309.0	NM_029103	74840.0	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	8.5	7.5	19.5	10.0	22.0	22.0
Merged-chr11-115274570-2	chr11	115273988	115274988	+	773.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007997, intron 2 of 11)	intron (NM_007997, intron 2 of 11)	2481.0	NM_007997	14149.0	Mm.4719	NM_007997	ENSMUSG00000018861	Fdxr	AR	ferredoxin reductase	protein-coding	6.5	0.0	4.5	6.0	4.5	1.0
Merged-chr16-33991105-2	chr16	33990605	33991605	+	773.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 53 of 59)	intron (NM_177357, intron 53 of 59)	-24067.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-36766395-2	chr19	36765911	36766911	+	773.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-29807.0	NM_016854	53412.0	Mm.24724	NM_016854	ENSMUSG00000067279	Ppp1r3c	PTG|Ppp1r5	protein phosphatase 1, regulatory (inhibitor) subunit 3C	protein-coding	5.0	4.0	4.0	14.0	0.0	11.5
Merged-chr11-109364470-2	chr11	109363970	109364970	+	773.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038097)	promoter-TSS (NR_038097)	-816.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	35.0	51.0	50.5	36.5	42.5	43.5
Merged-chr2-180698295-2	chr2	180697795	180698795	+	773.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291432, intron 1 of 5)	intron (NM_001291432, intron 1 of 5)	3807.0	NM_011805	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87010654-4	chr11	87010167	87011167	+	773.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16905.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34913342-2	chr7	34912842	34913842	+	773.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 1 of 14)	PB1D10|SINE|Alu	935.0	NM_008820	18624.0	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46866783-2	chr19	46866283	46867283	+	773.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001102471, intron 4 of 6)	intron (NM_001102471, intron 4 of 6)	95568.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.0	0.0	0.0	0.0	1.5	0.0
Merged-chr1-120067671-2	chr1	120067170	120068170	+	773.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019432, exon 2 of 2)	3' UTR (NM_019432, exon 2 of 2)	6110.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	0.0	6.0	0.0	0.0	0.0	0.0
Merged-chr1-172619425-4	chr1	172618934	172619934	+	773.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13540.0	NM_026725	68440.0	Mm.33024	NM_026725	ENSMUSG00000026544	Dusp23	1300005N15Rik|LDP-3	dual specificity phosphatase 23	protein-coding	1.0	0.0	0.0	0.0	0.0	7.5
Merged-chr15-25796552-3	chr15	25796053	25797053	+	773.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001353142, intron 9 of 20)	B3A|SINE|B2	22540.0	NM_001353141	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58381777-2	chr1	58381277	58382277	+	773.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-11359.0	NM_025824	66882.0	Mm.21848	NM_025824	ENSMUSG00000051223	Bzw1	1200015E15Rik|mKIAA0005	basic leucine zipper and W2 domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-100535346-2	chr3	100534846	100535846	+	773.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46154.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	0.0	0.0	3.0	4.0	1.5	0.0
Merged-chr6-87277791-2	chr6	87277291	87278291	+	773.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054041, intron 8 of 17)	intron (NM_054041, intron 8 of 17)	57984.0	NM_054041	69538.0	Mm.232525	NM_054041	ENSMUSG00000033420	Antxr1	2310008J16Rik|2810405N18Rik|Antrx1|Tem8	anthrax toxin receptor 1	protein-coding	1.5	8.5	0.0	1.5	11.0	0.0
Merged-chr11-101096571-2	chr11	101096071	101097071	+	773.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_155070, exon 11 of 11)	non-coding (NR_155070, exon 11 of 11)	-1136.0	NM_008949	19183.0	Mm.18344	NM_008949	ENSMUSG00000019303	Psmc3ip	C79099|GT198|HOP2|Tbpip	proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9946203-1	chr19	9945703	9946703	+	773.5	f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-34397.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.0	3.0	1.0	0.0	6.0	5.5
Merged-chr15-81015862-2	chr15	81015362	81016362	+	773.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_153049, exon 11 of 13)	exon (NM_153049, exon 11 of 13)	38097.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128235339-2	chr8	128234839	128235839	+	773.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42886.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	2.5	0.0	0.0	2.0	4.0	1.0
Merged-chr1-91022990-2	chr1	91022490	91023490	+	773.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	24263.0	NM_001111312	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191177373-4	chr1	191176929	191177929	+	773.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007498, exon 2 of 4)	exon (NM_007498, exon 2 of 4)	5904.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33761257-2	chr17	33760757	33761757	+	773.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008997)	promoter-TSS (NM_008997)	-771.0	NM_008997	19326.0	Mm.387587	NM_008997	ENSMUSG00000077450	Rab11b	A730055L17Rik	RAB11B, member RAS oncogene family	protein-coding	35.0	111.5	84.5	36.5	111.5	85.5
Merged-chr2-92460606-3	chr2	92460115	92461115	+	773.476196	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145832)	promoter-TSS (NM_145832)	-97.0	NM_145832	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38672450-3	chr15	38671960	38672960	+	773.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025494, intron 1 of 12)	intron (NM_025494, intron 1 of 12)	10556.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116341215-4	chr3	116340726	116341726	+	773.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001173553, intron 5 of 13)	intron (NM_001173553, intron 5 of 13)	13018.0	NM_001355646	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38531476-6	chr6	38530940	38531940	+	773.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3421.0	NM_025363	66117.0	Mm.158971	NM_025363	ENSMUSG00000019689	Fmc1	1110001J03Rik	formation of mitochondrial complex V assembly factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-108447940-4	chr5	108447411	108448411	+	773.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172883, intron 1 of 9)	intron (NM_172883, intron 1 of 9)	1189.0	NM_001359977	243197.0	Mm.106818	NM_172883	ENSMUSG00000029490	Mfsd7a	4732482E20Rik|Mfsd7|Slc49a3	major facilitator superfamily domain containing 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-133613844-4	chr1	133613353	133614353	+	773.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER96|DNA|hAT-Tip100	-3573.0	NM_009227	20643.0	Mm.249110	NM_009227	ENSMUSG00000090553	Snrpe	AL022645|C76690|SME	small nuclear ribonucleoprotein E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22368263-5	chr9	22367732	22368732	+	773.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028390, intron 8 of 23)	intron (NM_028390, intron 8 of 23)	20974.0	NM_028390	68743.0	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-23097201-4	chr2	23096699	23097699	+	773.354187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355638, intron 10 of 13)	MTEb|LTR|ERVL-MaLR	28127.0	NM_001355638	74159.0	Mm.181973	NM_028793	ENSMUSG00000026781	Acbd5	1300014E15Rik	acyl-Coenzyme A binding domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59724695-2	chr9	59724195	59725195	+	773.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16931.0	NM_001033498	546134.0	Mm.297580	NM_001033498	ENSMUSG00000074259	Gramd2	BC064463|Gramd2a	GRAM domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87715434-2	chr16	87714934	87715934	+	773.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_007520, exon 2 of 5)	exon (NM_007520, exon 2 of 5)	16480.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37488548-2	chr1	37488048	37489048	+	773.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024017)	promoter-TSS (NR_024017)	57.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34743939-2	chr17	34743439	34744439	+	773.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009780)	promoter-TSS (NM_009780)	-42.0	NM_009780	12268.0	Mm.477109	NM_009780	ENSMUSG00000073418	C4b	C4|Ss	complement component 4B (Chido blood group)	protein-coding	1.5	1.0	19.0	9.5	4.5	6.5
Merged-chr15-86190255-2	chr15	86189755	86190755	+	773.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4114.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25685601-2	chr7	25685101	25686101	+	773.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172148, intron 2 of 2)	intron (NM_172148, intron 2 of 2)	-1401.0	NM_011577	21803.0	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-64747360-3	chr14	64746853	64747853	+	773.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081177, intron 17 of 39)	CT-rich|Low_complexity|Low_complexity	94822.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	5.0	0.0	0.0	14.0	0.0	0.5
Merged-chr9-20996712-2	chr9	20996212	20997212	+	773.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6025.0	NM_023167	66163.0	Mm.427576	NM_023167	ENSMUSG00000003299	Mrpl4	1110017G11Rik	mitochondrial ribosomal protein L4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7307244-3	chr19	7306751	7307751	+	773.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080388, intron 1 of 16)	intron (NM_001080388, intron 1 of 16)	-11804.0	NM_001080390	13728.0	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-143929922-3	chr1	143929427	143930427	+	773.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74222.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125380666-3	chr5	125380251	125381251	+	773.333313	f0_balb.idr|f1_balb.idr	Intergenic	B3A|SINE|B2	9266.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	1.0	0.0	2.0	5.5	6.5	9.0
Merged-chr7-16282570-2	chr7	16282070	16283070	+	773.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_001136471, exon 5 of 14)	exon (NM_001136471, exon 5 of 14)	2089.0	NM_172297	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134828092-3	chr4	134827562	134828562	+	773.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001355501, exon 4 of 9)	exon (NM_001355501, exon 4 of 9)	25283.0	NM_001355501	66146.0	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61|Maco1	transmembrane protein 57	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50551664-2	chr16	50551164	50552164	+	773.333313	f1_balb.idr|f1_c57bl6.idr	intron (NR_040379, intron 4 of 5)	RSINE1|SINE|B4	23162.0	NR_040379	619312.0	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-53013393-1	chr2	53012893	53013893	+	773.333313	f0_balb.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	155525.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129361361-3	chr6	129360868	129361868	+	773.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177686, intron 5 of 5)	intron (NM_177686, intron 5 of 5)	11124.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	0.0	5.5	4.0	0.0	3.0	9.0
Merged-chr12-102320103-4	chr12	102319573	102320573	+	773.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 2 of 9)	ORR1E|LTR|ERVL-MaLR	36432.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	8.0	44.0	34.0	10.0	7.0	17.0
Merged-chr11-120345218-8	chr11	120344681	120345681	+	773.28125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001313923)	TTS (NM_001313923)	2232.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-56971117-3	chr1	56970569	56971569	+	773.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024325)	promoter-TSS (NR_024325)	265.0	NM_139146	212712.0	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding	2.0	0.5	0.0	0.0	0.0	0.0
Merged-chr15-64382674-5	chr15	64382197	64383197	+	773.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 1 of 28)	CpG	222.0	NM_001276461	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11211530-2	chr16	11211030	11212030	+	773.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_038156, intron 1 of 2)	intron (NR_038156, intron 1 of 2)	8147.0	NR_038156	69918.0	Mm.440400	NR_038154		2610020C07Rik	-	RIKEN cDNA 2610020C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85990161-2	chr1	85989661	85990661	+	773.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-29106.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21830277-2	chr13	21829777	21830777	+	773.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1881.0	NM_175657	319161.0	Mm.261664	NM_175657	ENSMUSG00000069305	Hist1h4n	-	histone cluster 1, H4n	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-70793632-2	chr2	70793132	70794132	+	773.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172664, intron 1 of 19)	ORR1D-int|LTR|ERVL-MaLR	31848.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128363433-4	chr8	128362937	128363937	+	773.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358959, intron 2 of 16)	intron (NM_001358959, intron 2 of 16)	4196.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	0.0	10.0	1.0	0.0	0.0	0.5
Merged-chr18-49834607-2	chr18	49834107	49835107	+	773.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081371, intron 1 of 42)	intron (NM_001081371, intron 1 of 42)	1610.0	NM_001081371	240283.0	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-181022389-3	chr1	181021874	181022874	+	773.233337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4805.0	NM_010145	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21139211-3	chr19	21138702	21139702	+	773.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34492.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-140990760-3	chr7	140990259	140991259	+	773.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19985.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-56054049-3	chr8	56053528	56054528	+	773.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080438, intron 4 of 9)	intron (NM_080438, intron 4 of 9)	113203.0	NM_080438	110304.0	Mm.307061	NM_080438	ENSMUSG00000038257	Glra3	-	glycine receptor, alpha 3 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89831369-5	chr3	89830830	89831830	+	773.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172530)	promoter-TSS (NM_172530)	-40.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-121040665-3	chr4	121040149	121041149	+	773.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007741, intron 1 of 31)	MIR|SINE|MIR	1083.0	NM_007741	12840.0	Mm.269384	NM_007741	ENSMUSG00000028626	Col9a2	AI427499|Col9a-2	collagen, type IX, alpha 2	protein-coding	0.0	0.0	1.5	0.0	0.0	1.0
Merged-chr2-83725556-3	chr2	83725047	83726047	+	773.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008402, intron 1 of 29)	intron (NM_008402, intron 1 of 29)	1150.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	14.0	25.5	25.0	2.5	13.0	5.5
Merged-chr16-77083124-3	chr16	77082617	77083617	+	773.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 16 of 23)	RLTR11A2|LTR|ERVK	69048.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75644447-2	chr11	75643947	75644947	+	773.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_008916, intron 7 of 11)	intron (NM_008916, intron 7 of 11)	-7062.0	NM_008659	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4285678-2	chr19	4285178	4286178	+	773.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_130863)	TTS (NM_130863)	-2541.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95978601-2	chr3	95978101	95979101	+	773.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6909.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-109123549-2	chr9	109123049	109124049	+	773.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28113.0	NM_172775	235611.0	Mm.53862	NM_172775	ENSMUSG00000053646	Plxnb1	2900002G15Rik|AU042020|mKIAA0407	plexin B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96907941-2	chr11	96907441	96908441	+	773.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001308183, exon 13 of 13)	3' UTR (NM_001308183, exon 13 of 13)	8573.0	NM_001308183	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr9-57147640-2	chr9	57147140	57148140	+	773.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_151685, intron 1 of 8)	intron (NR_151685, intron 1 of 8)	665.0	NM_028347	72774.0	Mm.35749	NM_028347	ENSMUSG00000032298	Neil1	2810450N13Rik|NEH1|Nei1	nei endonuclease VIII-like 1 (E. coli)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117776174-2	chr11	117775674	117776674	+	773.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145439, intron 6 of 19)	intron (NM_145439, intron 6 of 19)	3474.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63134034-2	chr9	63133534	63134534	+	773.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12946.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-15990321-4	chr19	15989830	15990830	+	773.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045355, intron 2 of 2)	L1M4b|LINE|L1	5255.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	3.0	22.0	13.5	14.0	5.5	13.5
Merged-chr2-129092371-4	chr2	129091873	129092873	+	773.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027192, intron 6 of 6)	intron (NM_027192, intron 6 of 6)	-8623.0	NM_009086	20017.0	Mm.259078	NM_009086	ENSMUSG00000027395	Polr1b	128kDa|D630020H17Rik|RPA116|RPA135|RPA2|Rpo1-2	polymerase (RNA) I polypeptide B	protein-coding	0.0	7.5	4.0	1.0	12.0	4.0
Merged-chr7-64286696-3	chr7	64286120	64287120	+	773.133362	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-1050.0	NM_172742	233315.0	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124482776-4	chr5	124482227	124483227	+	773.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029532)	promoter-TSS (NM_029532)	-428.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96402032-4	chr3	96401517	96402517	+	773.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	12816.0	NR_001579	21748.0		NR_001579	ENSMUSG00000064796	Terc	mTER|mTR	telomerase RNA component	ncRNA	0.0	0.0	0.0	0.0	0.5	1.0
Merged-chr6-42295896-3	chr6	42295394	42296394	+	773.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013491, intron 7 of 22)	intron (NM_013491, intron 7 of 22)	9209.0	NM_013491	12723.0	Mm.386757	NM_013491	ENSMUSG00000029862	Clcn1	Clc-1|Clc1|SMCC1|adr|mto|myotonia|nmf355	chloride channel, voltage-sensitive 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41272147-2	chr19	41271647	41272647	+	773.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	-8143.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83069117-3	chr6	83068616	83069616	+	773.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009392, exon 2 of 3)	exon (NM_009392, exon 2 of 3)	1109.0	NM_009392	21909.0	Mm.37	NM_009392	ENSMUSG00000068327	Tlx2	Enx|Hox11L.1|Hox11l1|NCX|Ncx1|Tlx1l1|Tlx1l2	T cell leukemia, homeobox 2	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr9-3006023-3	chr9	3005575	3006575	+	773.0476070000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	32668.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100194339-4	chr12	100193819	100194819	+	773.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045282)	TTS (NR_045282)	-5116.0	NM_009790	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4189248-4	chr12	4188750	4189750	+	773.012512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 3 of 21)	intron (NM_001159537, intron 3 of 21)	44715.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24480666-3	chr17	24480088	24481088	+	773.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1510.0	NM_019988	56716.0	Mm.289516	NM_019988	ENSMUSG00000024142	Mlst8	0610033N12Rik|AA409454|AI505104|AI851821|Gbl	MTOR associated protein, LST8 homolog (S. cerevisiae)	protein-coding	1.0	16.5	17.5	1.5	17.0	14.0
Merged-chr15-99473756-3	chr15	99473253	99474253	+	773.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029236, intron 1 of 1)	intron (NM_029236, intron 1 of 1)	977.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	3.0	18.5	3.0	0.5	16.0	8.5
Merged-chr4-62648862-2	chr4	62648362	62649362	+	773.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019492, intron 18 of 19)	intron (NM_019492, intron 18 of 19)	-25112.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-29733585-1	chr5	29733085	29734085	+	773.0	f1_balb.idr	Intergenic	Intergenic	-2313.0	NM_001359198	23950.0	Mm.290110	NM_011847	ENSMUSG00000029131	Dnajb6	HSJ-2|Mrj|mDj4	DnaJ heat shock protein family (Hsp40) member B6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59372881-3	chr4	59372406	59373406	+	773.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 8 of 16)	intron (NM_001163288, intron 8 of 16)	65727.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	5.0	0.0	0.0	5.0	0.0	0.5
Merged-chr6-124474653-2	chr6	124474153	124475153	+	773.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	-9869.0	NM_153508	232370.0	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-65737474-1	chr15	65736974	65737974	+	773.0	f0_balb.idr	Intergenic	Intergenic	-49546.0	NM_133766	76740.0	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75059933-2	chr14	75059433	75060433	+	773.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 2 of 3)	(TG)n|Simple_repeat|Simple_repeat	43906.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-100642314-2	chr9	100641822	100642822	+	773.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1126.0	NM_009282	20842.0	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	37.0	75.5	72.5	38.5	121.5	95.0
Merged-chr2-132022861-2	chr2	132022361	132023361	+	773.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175445, intron 1 of 10)	B1_Mur4|SINE|Alu	7127.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117307201-2	chr11	117306701	117307701	+	773.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-24514.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-94665120-1	chr9	94664620	94665620	+	773.0	f0_balb.idr	Intergenic	Intergenic	-4772.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	1.0	2.5	9.0	0.0	2.5	2.0
Merged-chr15-76296232-2	chr15	76295732	76296732	+	773.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153122)	TTS (NM_153122)	1798.0	NM_001195537	100503915.0	Mm.393455	NM_001195537	ENSMUSG00000071724	Smpd5	Gm10345|MA-nSMase	sphingomyelin phosphodiesterase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-142889924-3	chr2	142889420	142890420	+	773.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 1 of 26)	intron (NM_001355123, intron 1 of 26)	11544.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-73704708-2	chr18	73704208	73705208	+	773.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008540)	promoter-TSS (NM_008540)	782.0	NR_155448	105246496.0	Mm.109270	NR_155448		4930578L24Rik	-	RIKEN cDNA 4930578L24 gene	ncRNA	2.5	0.0	5.0	5.5	7.0	4.0
Merged-chr9-25401096-1	chr9	25400596	25401596	+	773.0	f0_balb.idr	Intergenic	RLTR26|LTR|ERVK	-80501.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44825666-2	chr7	44825217	44826217	+	773.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171024, intron 1 of 8)	intron (NM_001171024, intron 1 of 8)	-9059.0	NR_033136	107503.0	Mm.389890	NM_030693	ENSMUSG00000038539	Atf5	AFTA|Atf7|Atfx|ODA-10	activating transcription factor 5	protein-coding	0.0	2.0	0.5	2.5	2.0	7.5
Merged-chr15-73129990-2	chr15	73129490	73130490	+	773.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 4 of 18)	intron (NM_153178, intron 4 of 18)	39578.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158123205-2	chr2	158122705	158123705	+	773.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 10 of 12)	intron (NM_009373, intron 10 of 12)	23187.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr15-29143802-2	chr15	29143302	29144302	+	773.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	569602.0	NR_039542	100628607.0		NR_039542	ENSMUSG00000092639	Mir3964	mmu-mir-3964|mu-mir-3964	microRNA 3964	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-29634420-3	chr13	29633919	29634919	+	773.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131896, intron 8 of 16)	L1MB3|LINE|L1	221254.0	NR_131896	68916.0	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166770910-2	chr2	166770410	166771410	+	773.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-22857.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19491943-2	chr7	19491443	19492443	+	773.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	16388.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-18473109-2	chr9	18472609	18473609	+	773.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028160, intron 1 of 7)	intron (NM_028160, intron 1 of 7)	450.0	NM_028935	72230.0	Mm.289689	NM_028160	ENSMUSG00000074500	Zfp558	1700007A21Rik|4932704I17Rik|Zfp558-ps	zinc finger protein 558	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-8489668-2	chr13	8489168	8490168	+	773.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110345, intron 1 of 10)	ORR1E|LTR|ERVL-MaLR	286802.0	NM_052977	94191.0	Mm.425794	NM_052977	ENSMUSG00000052551	Adarb2	Adar3|RED2	adenosine deaminase, RNA-specific, B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32645646-2	chr16	32645146	32646146	+	773.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110147, intron 1 of 13)	intron (NM_001110147, intron 1 of 13)	1003.0	NM_016788	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-24683926-2	chr11	24683426	24684426	+	773.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46796.0	NR_033491	100038617.0	Mm.387376	NR_033491	ENSMUSG00000073103	Gm10466	-	predicted gene 10466	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77397143-1	chr10	77396643	77397643	+	773.0	f0_balb.idr	intron (NM_001024838, intron 1 of 11)	intron (NM_001024838, intron 1 of 11)	21130.0	NM_130895	110532.0	Mm.276815	NM_130895	ENSMUSG00000020262	Adarb1	1700057H01Rik|AW124433|AW558573|Adar2|BB220382|D10Bwg0447e|Red1	adenosine deaminase, RNA-specific, B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62555539-1	chr11	62555039	62556039	+	773.0	f0_balb.idr	Intergenic	Intergenic	3808.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121679708-3	chr9	121679222	121680222	+	773.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178677)	TTS (NM_178677)	25307.0	NM_178677	215474.0	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	0.0	7.0	3.0	3.5	1.0	5.0
Merged-chr1-6476666-2	chr1	6476166	6477166	+	773.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10565.0	NM_001244693	240690.0	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132144558-2	chr4	132144058	132145058	+	773.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013622)	promoter-TSS (NM_013622)	-72.0	NM_013622	18386.0	Mm.5243	NM_013622	ENSMUSG00000050511	Oprd1	DOR|DOR-1|Nbor|mDOR	opioid receptor, delta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98703927-1	chr7	98703427	98704427	+	773.0	f1_balb.idr	promoter-TSS (NR_144495)	promoter-TSS (NR_144495)	680.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	9.5	34.5	8.0	4.5	23.5	17.0
Merged-chr2-142700912-3	chr2	142700428	142701428	+	773.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 23 of 26)	intron (NM_001355123, intron 23 of 26)	200536.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120149747-2	chr7	120149247	120150247	+	773.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4456.0	NM_011775	22787.0	Mm.6510	NM_011775	ENSMUSG00000030911	Zp2	Zp-2	zona pellucida glycoprotein 2	protein-coding	0.0	0.0	2.0	1.0	0.0	0.0
Merged-chr10-63385797-2	chr10	63385297	63386297	+	773.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013888)	promoter-TSS (NM_013888)	-766.0	NM_013888	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79326716-2	chr15	79326216	79327216	+	773.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016915, intron 1 of 15)	B2_Mm2|SINE|B2	1655.0	NM_016915	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	0.0	1.5	0.5	0.0	1.0	1.0
Merged-chr5-137029173-2	chr5	137028673	137029673	+	773.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1122.0	NM_001039385	381677.0	Mm.389697	NM_001039385	ENSMUSG00000037428	Vgf	Gm1052	VGF nerve growth factor inducible	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84614346-2	chr15	84613846	84614846	+	773.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48860.0	NM_001346662	109270.0	Mm.291372	NM_146061	ENSMUSG00000036106	Prr5	AU043908|Arhgap8|C030017C09Rik|C78947|Protor-1|Protor1	proline rich 5 (renal)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84169211-2	chr8	84168716	84169716	+	773.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029045, intron 6 of 8)	intron (NM_029045, intron 6 of 8)	7336.0	NM_194059	244551.0	Mm.216740	NM_194059	ENSMUSG00000056155	Nanos3	nos3	nanos C2HC-type zinc finger 3	protein-coding	0.5	0.0	0.0	0.0	1.0	0.0
Merged-chr4-136696734-2	chr4	136696234	136697234	+	773.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010142, intron 3 of 15)	intron (NM_010142, intron 3 of 15)	74113.0	NM_001243262	242707.0	Mm.448979	NM_001243262	ENSMUSG00000070683	Lactbl1	-	lactamase, beta-like 1	protein-coding	0.0	0.0	1.0	3.5	0.0	3.0
Merged-chr6-124838038-2	chr6	124837538	124838538	+	773.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013530, intron 3 of 9)	intron (NM_013530, intron 3 of 9)	2237.0	NM_013530	14695.0	Mm.68889	NM_013530	ENSMUSG00000023439	Gnb3	Gnb-3	guanine nucleotide binding protein (G protein), beta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17579005-4	chr10	17578505	17579505	+	773.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-144223.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	2.0	1.0	4.0	1.5	0.0	2.5
Merged-chr7-101407419-2	chr7	101406919	101407919	+	773.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 29 of 33)	intron (NM_001040111, intron 29 of 33)	13031.0	NM_198096	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98831800-2	chr13	98831300	98832300	+	773.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16351.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	6.0	22.0	11.0	2.5	10.5	7.0
Merged-chr12-25142870-2	chr12	25142375	25143375	+	773.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13701.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	35.5	99.0	54.0	54.0	123.5	89.0
Merged-chr11-69356115-1	chr11	69355615	69356615	+	773.0	f1_balb.idr	intron (NM_146019, intron 18 of 39)	intron (NM_146019, intron 18 of 39)	13311.0	NM_146019	216848.0	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107758995-2	chr13	107758495	107759495	+	773.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	71598.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88684710-2	chr10	88684210	88685210	+	773.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1687.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72558213-2	chr6	72557713	72558713	+	773.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001271415, exon 8 of 11)	exon (NM_001271415, exon 8 of 11)	8566.0	NM_001271395	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58973904-2	chr15	58973404	58974404	+	773.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	B1_Mur1|SINE|Alu	40094.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107923888-3	chr13	107923384	107924384	+	772.977783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33820.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	19.0	65.0	63.0	23.5	64.0	55.0
Merged-chr2-5393225-4	chr2	5392769	5393769	+	772.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030601, intron 1 of 1)	intron (NR_030601, intron 1 of 1)	13879.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26649701-3	chr17	26649192	26650192	+	772.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 9 of 9)	intron (NM_026170, intron 9 of 9)	-26704.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-116237735-4	chr8	116237227	116238227	+	772.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-267288.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-49982016-4	chr18	49981507	49982507	+	772.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177759, intron 1 of 1)	RLTR12E|LTR|ERVK	2580.0	NM_001177759	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	2.0	14.0	12.0	2.0	12.0	6.5
Merged-chr10-120234156-3	chr10	120233641	120234641	+	772.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7081.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr10-69240672-3	chr10	69240130	69241130	+	772.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252638, intron 2 of 11)	intron (NM_001252638, intron 2 of 11)	27436.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-103233189-4	chr9	103232688	103233688	+	772.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2902.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	6.0	38.5	16.0	3.5	14.5	13.5
Merged-chr15-12116610-2	chr15	12116110	12117110	+	772.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1241.0	NM_011767	22763.0	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84218100-3	chr1	84217610	84218610	+	772.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_105771)	TTS (NR_105771)	851.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122922649-2	chr6	122922149	122923149	+	772.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_199311, intron 1 of 5)	intron (NM_199311, intron 1 of 5)	801.0	NM_199311	269799.0	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65965448-2	chr3	65964948	65965948	+	772.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7199.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0.0	6.0	5.0	0.0	0.0	6.0
Merged-chr2-166700984-2	chr2	166700484	166701484	+	772.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	L2a|LINE|L2	12848.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-33909309-2	chr1	33908809	33909809	+	772.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276764, intron 2 of 102)	intron (NM_001276764, intron 2 of 102)	1084.0	NM_001276764	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25265931-2	chr7	25265431	25266431	+	772.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13C2|LTR|ERVK	-1768.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-106556054-4	chr3	106555554	106556554	+	772.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025582, intron 3 of 6)	ORR1G|LTR|ERVL-MaLR	-8252.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	17.5	18.0	6.5	17.5	18.0	6.5
Merged-chr9-21598710-2	chr9	21598210	21599210	+	772.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5879.0	NM_138303	74766.0	Mm.475712	NM_138303	ENSMUSG00000032182	Yipf2	1300010K09Rik	Yip1 domain family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129213743-4	chr6	129213261	129214261	+	772.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24284.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.0	2.5	0.0	0.0	1.5	0.0
Merged-chr5-115515582-3	chr5	115515081	115516081	+	772.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	8905.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	104.0	212.0	138.5	84.0	196.5	98.0
Merged-chr18-38422479-3	chr18	38421959	38422959	+	772.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	3552.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22399478-3	chr16	22398969	22399969	+	772.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358428, intron 8 of 12)	intron (NM_001358428, intron 8 of 12)	38899.0	NM_001358428	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-80953114-3	chr5	80952594	80953594	+	772.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67477.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	3.0	5.0	5.5	0.0	0.0	2.5
Merged-chr4-101132852-3	chr4	101132340	101133340	+	772.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183024, intron 6 of 11)	L2c|LINE|L2	63802.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39957982-3	chr10	39957487	39958487	+	772.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001113388)	TTS (NM_001113388)	2166.0	NM_001173500	100041085.0	Mm.332530	NM_001173500	ENSMUSG00000071335	Mfsd4b3	G630090E17Rik|Naglt1c	major facilitator superfamily domain containing 4B3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121544941-3	chr3	121544473	121545473	+	772.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12629.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-78511947-2	chr1	78511447	78512447	+	772.75	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026713, exon 2 of 7)	5' UTR (NM_026713, exon 2 of 7)	887.0	NM_026713	68393.0	Mm.41325	NM_026713	ENSMUSG00000012187	Mogat1	0610030A14Rik|1110064N14Rik|Dgat2l|Dgat2l1|MGAT1|WI1-2612I11.1|mDC2	monoacylglycerol O-acyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127302031-2	chr2	127301531	127302531	+	772.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31802.0	NM_139308	99138.0	Mm.41271	NM_139308	ENSMUSG00000027367	Stard7	AI852671|AL022671|AW544915	START domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-11338398-4	chr12	11337897	11338897	+	772.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012038, intron 2 of 3)	intron (NM_012038, intron 2 of 3)	38510.0	NR_106136	102465775.0		NR_106136	ENSMUSG00000098879	Mir7675	Gm27965|mmu-mir-7675	microRNA 7675	ncRNA	0.0	0.0	1.5	0.0	1.0	0.0
Merged-chr16-85803800-2	chr16	85803300	85804300	+	772.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009621)	promoter-TSS (NM_009621)	-687.0	NM_009621	11504.0	Mm.1421	NM_009621	ENSMUSG00000022893	Adamts1	ADAM-TS1|ADAMTS|ADAMTS-1|C3-C5|METH-1|METH1	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84758925-4	chr2	84758422	84759422	+	772.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16507.0	NM_009776	12258.0	Mm.38888	NM_009776	ENSMUSG00000023224	Serping1	C1INH|C1nh	serine (or cysteine) peptidase inhibitor, clade G, member 1	protein-coding	0.0	0.0	0.0	0.0	1.5	0.0
Merged-chr13-94174326-2	chr13	94173826	94174826	+	772.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_172589, exon 3 of 4)	exon (NM_172589, exon 3 of 4)	110955.0	NM_029153	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6337883-2	chr19	6337383	6338383	+	772.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168489, intron 6 of 9)	intron (NM_001168489, intron 6 of 9)	2844.0	NM_008583	17283.0	Mm.12917	NM_008583	ENSMUSG00000024947	Men1	AW045611	multiple endocrine neoplasia 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12928075-2	chr13	12927575	12928575	+	772.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_I-int|LTR|ERVK	77255.0	NM_031191	18811.0	Mm.88796	NM_031191	ENSMUSG00000079092	Prl2c2	Ghd2|MRP-1|PLF-1|Plf|Plf1	prolactin family 2, subfamily c, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27725846-4	chr7	27725421	27726421	+	772.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-5488.0	NM_029531	22718.0	Mm.66913	NM_009560	ENSMUSG00000037640	Zfp60	6330516O17Rik|AI426106|AI449354|Mfg-3|Mfg3	zinc finger protein 60	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr7-24237588-3	chr7	24237068	24238068	+	772.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020262)	promoter-TSS (NM_020262)	30.0	NM_020262	56869.0	Mm.103751	NM_020262	ENSMUSG00000074283	Zfp109	-	zinc finger protein 109	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112627638-3	chr12	112627133	112628133	+	772.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 1 of 12)	intron (NM_007421, intron 1 of 12)	7586.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80948717-4	chr10	80948151	80949151	+	772.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010319)	TTS (NM_010319)	18560.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137630240-4	chr5	137629734	137630734	+	772.700012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033148, intron 1 of 21)	intron (NR_033148, intron 1 of 21)	1111.0	NR_033148	100316903.0	Mm.200763	NR_033148		Gm20605	Lrch4-sap25	predicted gene 20605	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55023891-4	chr1	55023379	55024379	+	772.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031179, intron 1 of 24)	(GGAA)n|Simple_repeat|Simple_repeat	3599.0	NM_031179	81898.0	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	4.5	26.0	10.0	15.5	32.0	18.5
Merged-chr2-155629500-1	chr2	155629000	155630000	+	772.666687	f0_balb.idr	exon (NM_001085378, exon 29 of 42)	exon (NM_001085378, exon 29 of 42)	6620.0	NR_030757	735275.0		NR_030757	ENSMUSG00000076312	Mir499	Mirn499|mir-499|mmu-mir-499	microRNA 499	ncRNA	12.0	0.0	2.0	1.5	3.0	2.5
Merged-chr1-91168187-3	chr1	91167660	91168660	+	772.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033408, intron 13 of 15)	intron (NM_001033408, intron 13 of 15)	-11662.0	NM_016894	51801.0	Mm.3272	NM_016894	ENSMUSG00000034353	Ramp1	9130218E19Rik	receptor (calcitonin) activity modifying protein 1	protein-coding	0.0	11.5	0.0	0.0	0.0	1.0
Merged-chr1-58802039-3	chr1	58801501	58802501	+	772.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080126)	promoter-TSS (NM_001080126)	-501.0	NM_001080126	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	31.0	37.0	39.0	13.5	25.0	21.0
Merged-chr4-46172085-3	chr4	46171594	46172594	+	772.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033201, exon 23 of 23)	3' UTR (NM_001033201, exon 23 of 23)	24217.0	NM_011728	22590.0	Mm.247036	NM_011728	ENSMUSG00000028329	Xpa	AI573865|Xpac	xeroderma pigmentosum, complementation group A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-74913909-3	chr18	74913410	74914410	+	772.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	47353.0	NM_010720	16891.0	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62338663-3	chr10	62338114	62339114	+	772.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010438, intron 4 of 21)	intron (NM_010438, intron 4 of 21)	1807.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91078847-3	chr2	91078335	91079335	+	772.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CGGGGG)n|Simple_repeat|Simple_repeat	-8520.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103056500-2	chr11	103056000	103057000	+	772.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_008707, intron 6 of 11)	intron (NM_008707, intron 6 of 11)	24448.0	NM_001361706	72469.0	Mm.264743	NM_152813	ENSMUSG00000020937	Plcd3	2610205J15Rik|mKIAA1964	phospholipase C, delta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-74013941-3	chr12	74013450	74014450	+	772.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172804, intron 1 of 6)	intron (NM_172804, intron 1 of 6)	16189.0	NM_172804	238266.0	Mm.311393	NM_172804	ENSMUSG00000044912	Syt16	6430703N11|Strep14|Syt14l|syt14r	synaptotagmin XVI	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119359670-2	chr2	119359199	119360199	+	772.666626	f0_balb.idr|f1_balb.idr	Intergenic	B1_Mus2|SINE|Alu	8457.0	NM_026929	69065.0	Mm.35083	NM_026929	ENSMUSG00000027313	Chac1	1810008K03Rik	ChaC, cation transport regulator 1	protein-coding	7.5	20.0	7.5	27.5	113.0	73.5
Merged-chr5-45534494-2	chr5	45533994	45534994	+	772.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_021416, intron 12 of 15)	intron (NM_021416, intron 12 of 15)	14265.0	NM_025895	66999.0	Mm.283045	NM_025895	ENSMUSG00000015804	Med28	1500003D12Rik|AI451633|AU045690|Eg1|FKSG20|magicin	mediator complex subunit 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101948427-2	chr5	101947924	101948924	+	772.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 10 of 66)	intron (NM_172882, intron 10 of 66)	121497.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	1.0	8.0	3.0	0.0	3.5	0.5
Merged-chr7-100700015-4	chr7	100699519	100700519	+	772.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6616.0	NM_001362169	319604.0	Mm.260362	NM_178764	ENSMUSG00000029461	Fam168a	2610030B18Rik|B930006L02Rik|mKIAA0280	family with sequence similarity 168, member A	protein-coding	0.5	0.5	5.0	0.5	2.0	7.0
Merged-chr18-10885953-4	chr18	10885459	10886459	+	772.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100407.0	NR_029781	723959.0		NR_029781	ENSMUSG00000106348	Mir1a-2	Mir1-2|Mirn1-2|mir-1a-2|mmu-mir-1-2|mmu-mir-1a-2	microRNA 1a-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87149496-4	chr1	87148992	87149992	+	772.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021306, intron 14 of 17)	intron (NM_021306, intron 14 of 17)	6644.0	NM_001277925	13599.0	Mm.140765	NM_021306	ENSMUSG00000026247	Ecel1	DINE|xce	endothelin converting enzyme-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36285075-5	chr18	36284680	36285680	+	772.608337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008989, intron 1 of 1)	intron (NM_008989, intron 1 of 1)	4018.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52618689-2	chr3	52618189	52619189	+	772.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	101725.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	0.0	11.0	5.5	7.5	0.0	4.0
Merged-chr3-109456523-3	chr3	109456017	109457017	+	772.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	115834.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	12.0	5.0	10.0	2.0	6.5	7.5
Merged-chr18-25668240-2	chr18	25667740	25668740	+	772.583313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362322, intron 2 of 12)	intron (NM_001362322, intron 2 of 12)	11508.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101254221-4	chr4	101253730	101254730	+	772.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 1 of 24)	intron (NM_146145, intron 1 of 24)	11052.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-57436664-3	chr19	57436174	57437174	+	772.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16232.0	NM_029839	72133.0	Mm.258404	NM_028115	ENSMUSG00000025086	Trub1	2610009I02Rik|9030425C13Rik|AI448235|BB118943|C76870	TruB pseudouridine (psi) synthase family member 1	protein-coding	1.5	0.0	1.5	0.0	0.0	0.0
Merged-chr4-149856558-3	chr4	149856053	149857053	+	772.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82286.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	3.5	0.0	5.5	0.5	0.0	1.0
Merged-chr7-110260111-4	chr7	110259616	110260616	+	772.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009302, intron 3 of 11)	intron (NM_009302, intron 3 of 11)	38413.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-8784923-3	chr16	8784423	8785423	+	772.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-45177.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-72558152-2	chr14	72557652	72558652	+	772.5	f0_balb.idr|f1_balb.idr	intron (NM_207636, intron 19 of 25)	intron (NM_207636, intron 19 of 25)	151851.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.0	3.0	0.0	11.5	6.5	6.5
Merged-chr19-28964403-2	chr19	28963923	28964923	+	772.5	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_198651)	promoter-TSS (NM_198651)	-269.0	NM_198651	381218.0	Mm.280653	NM_198651	ENSMUSG00000064202	4430402I18Rik	AW122618|Spata6l	RIKEN cDNA 4430402I18 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54555027-2	chr11	54554527	54555527	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 4 of 28)	intron (NM_001252494, intron 4 of 28)	32182.0	NM_001252496	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41015704-2	chr19	41015204	41016204	+	772.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4026.0	NR_155302	100861913.0	Mm.35204	NR_155302		C330026H20Rik	-	RIKEN cDNA C330026H20 gene	ncRNA	1.5	1.5	12.0	3.5	10.0	8.0
Merged-chr18-23883524-2	chr18	23883024	23884024	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 6 of 7)	intron (NM_001162941, intron 6 of 7)	-71164.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64896775-4	chr5	64896271	64897271	+	772.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35928.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180117763-2	chr2	180117263	180118263	+	772.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1603.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	0.0	0.0	0.0	0.0	1.0	0.5
Merged-chr19-32759394-2	chr19	32758894	32759894	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 1 of 8)	intron (NM_008960, intron 1 of 8)	1817.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68904897-1	chr11	68904397	68905397	+	772.5	f1_c57bl6.idr	TTS (NR_003373)	TTS (NR_003373)	3308.0	NR_003373	100034726.0	Mm.3229	NR_003373	ENSMUSG00000062353	Gm15772	-	ribosomal protein L26 pseudogene	pseudo	10.0	20.5	4.0	5.0	4.0	1.5
Merged-chr10-43856120-2	chr10	43855620	43856620	+	772.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	30213.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180427347-2	chr1	180426847	180427847	+	772.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56157.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118462098-2	chr11	118461598	118462598	+	772.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7103.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110735650-2	chr9	110735150	110736150	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083936, intron 1 of 13)	intron (NM_001083936, intron 1 of 13)	6960.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-65128887-2	chr6	65128387	65129387	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019455, intron 4 of 5)	intron (NM_019455, intron 4 of 5)	15843.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-83265783-2	chr4	83265287	83266287	+	772.5	f0_balb.idr|f1_balb.idr	intron (NM_027238, intron 3 of 19)	intron (NM_027238, intron 3 of 19)	58402.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	38.5	111.5	72.0	70.5	238.0	155.0
Merged-chr14-122993693-2	chr14	122993193	122994193	+	772.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-10410.0	NR_153663	70551.0	Mm.271988	NM_028651	ENSMUSG00000041594	Tmtc4	4930403J22Rik|5730419O14Rik	transmembrane and tetratricopeptide repeat containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138166255-2	chr1	138165755	138166755	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	8871.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118082091-2	chr10	118081591	118082591	+	772.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-59696.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	111.0	188.5	161.5	98.5	265.5	194.5
Merged-chr15-27877734-2	chr15	27877234	27878234	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 10 of 56)	intron (NM_001081302, intron 10 of 56)	148114.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84955188-2	chr18	84954688	84955688	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015798, intron 1 of 9)	intron (NM_015798, intron 1 of 9)	-3664.0	NM_025969	67105.0	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	translocase of inner mitochondrial membrane 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129284696-3	chr6	129284223	129285223	+	772.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9354.0	NM_001033122	12515.0	Mm.74745	NM_001033122	ENSMUSG00000030156	Cd69	5830438K24Rik|AI452015|AIM|VEA	CD69 antigen	protein-coding	0.0	2.0	0.0	0.0	0.0	0.5
Merged-chr19-36904483-2	chr19	36903983	36904983	+	772.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	15116.0	NM_028263	72514.0	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54402875-3	chr14	54402414	54403414	+	772.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	ORR1D1|LTR|ERVL-MaLR	6558.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	30.0	52.5	61.5	33.0	63.5	109.5
Merged-chr2-166587087-2	chr2	166586587	166587587	+	772.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_177782, exon 22 of 40)	exon (NM_177782, exon 22 of 40)	22565.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122879592-2	chr8	122879092	122880092	+	772.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31218.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	2.5	3.0	0.5	11.0	1.0	0.5
Merged-chr7-19274152-2	chr7	19273652	19274652	+	772.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-2298.0	NM_001282022	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	1.0	0.0	0.5	2.0	0.0	1.5
Merged-chr10-128509239-2	chr10	128508739	128509739	+	772.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2791.0	NR_105881	102465552.0		NR_105881	ENSMUSG00000099292	Mir6916	Gm27721|mmu-mir-6916	microRNA 6916	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-107922749-2	chr7	107922249	107923249	+	772.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL2|LINE|L1	-10773.0	NM_146775	258771.0	Mm.451662	NM_146775	ENSMUSG00000095212	Olfr473	MOR204-4	olfactory receptor 473	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-13039689-2	chr7	13039189	13040189	+	772.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1414.0	NM_001168469	22192.0	Mm.196580	NM_145578	ENSMUSG00000005575	Ube2m	2510040H03Rik|UBC12|Ubc-rs2	ubiquitin-conjugating enzyme E2M	protein-coding	0.0	4.0	2.0	1.0	0.0	1.0
Merged-chr7-136340420-2	chr7	136339920	136340920	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040459, intron 4 of 4)	intron (NR_040459, intron 4 of 4)	8995.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-160196840-2	chr1	160196340	160197340	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347121, intron 1 of 2)	RSINE1|SINE|B4	1508.0	NM_001347121	64659.0	Mm.29599	NM_025474	ENSMUSG00000058267	Mrps14	1810032L21Rik|AL022847|Rpms14	mitochondrial ribosomal protein S14	protein-coding	0.0	0.5	3.5	0.0	1.5	5.0
Merged-chr14-63508589-2	chr14	63508089	63509089	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021480, intron 1 of 8)	CpG	503.0	NM_021480	58865.0	Mm.354229	NM_021480	ENSMUSG00000021953	Tdh	-	L-threonine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr11-15873665-2	chr11	15873165	15874165	+	772.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2A|LINE|L1	-384059.0	NM_001290539	211739.0	Mm.284015	NM_145967	ENSMUSG00000048834	Vstm2a	Vstm2	V-set and transmembrane domain containing 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-28513689-2	chr2	28513189	28514189	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009058, intron 1 of 17)	CpG	522.0	NM_001145834	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143055521-2	chr7	143055022	143056022	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133655, intron 1 of 7)	intron (NM_133655, intron 1 of 7)	-1836.0	NR_110354	97423.0	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	10.5	23.0	28.0	17.0	37.5	25.0
Merged-chr8-13094084-2	chr8	13093584	13094584	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178708, intron 6 of 13)	intron (NM_178708, intron 6 of 13)	11259.0	NM_178708	234069.0	Mm.103427	NM_178708	ENSMUSG00000038542	Pcid2	A730042J05Rik	PCI domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35171198-2	chr7	35170698	35171698	+	772.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-15187.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35259762-2	chr2	35259262	35260262	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001206368, intron 1 of 16)	intron (NM_001206368, intron 1 of 16)	3403.0	NM_001206368	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116656867-2	chr11	116656367	116657367	+	772.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163318)	promoter-TSS (NM_001163318)	-241.0	NM_001163318	100038570.0	Mm.390349	NM_001163318	ENSMUSG00000075410	Prcd	Gm11744	photoreceptor disc component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94013346-2	chr10	94012846	94013846	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304720, intron 1 of 11)	B3|SINE|B2	22396.0	NM_001304720	215008.0	Mm.124177	NM_172538	ENSMUSG00000036099	Vezt	A630071D13Rik|AI848282	vezatin, adherens junctions transmembrane protein	protein-coding	0.0	0.0	0.0	1.5	0.0	0.0
Merged-chr10-81564552-2	chr10	81564052	81565052	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276288, intron 3 of 6)	intron (NM_001276288, intron 3 of 6)	5108.0	NM_001276288	14797.0	Mm.180013	NM_010347	ENSMUSG00000054452	Aes	AL024115|Esp1|Grg|Grg-5|Grg5|Tle5	amino-terminal enhancer of split	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105789680-2	chr1	105789180	105790180	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009399, intron 1 of 9)	B4A|SINE|B4	8957.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-97705497-3	chr1	97704987	97705987	+	772.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_173760)	TTS (NM_173760)	-43469.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33977117-2	chr17	33976617	33977617	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_004446, intron 3 of 5)	B2_Mm1t|SINE|B2	1674.0	NR_004446	630499.0	Mm.440940	NM_001081015		H2-K2	EG630499|Gm7035|H-2K1|H-2K1K|H-2K2|H2-K1	histocompatibility 2, K region locus 2	pseudo	4.0	0.5	3.5	2.0	0.5	0.5
Merged-chr11-120648148-3	chr11	120647600	120648600	+	772.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001204820, exon 1 of 2)	5' UTR (NM_001204820, exon 1 of 2)	237.0	NM_026751	68515.0	Mm.194594	NM_026751	ENSMUSG00000025141	Myadml2	1110012N22Rik	myeloid-associated differentiation marker-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-31801403-4	chr13	31800900	31801900	+	772.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5246.0	NM_008592	17300.0	Mm.12949	NM_008592	ENSMUSG00000050295	Foxc1	FREAC3|Fkh1|Mf1|Mf4|ch|fkh-1|frkhda	forkhead box C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6220320-4	chr2	6219816	6220816	+	772.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 1 of 6)	intron (NR_040333, intron 1 of 6)	-7322.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	0.0	0.0	1.0	3.0	0.0	6.0
Merged-chr18-35021303-3	chr18	35020770	35021770	+	772.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66919.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-15999487-3	chr19	15998993	15999993	+	772.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045355, intron 2 of 2)	L1_Rod|LINE|L1	14418.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	2.5	18.0	8.5	0.0	3.5	3.5
Merged-chr9-40269242-6	chr9	40268722	40269722	+	772.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178227)	promoter-TSS (NM_178227)	6.0	NM_001359700	235281.0	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13863642-4	chr16	13863117	13864117	+	772.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039533, intron 8 of 22)	intron (NM_001039533, intron 8 of 22)	39528.0	NM_001039533	94184.0	Mm.171484	NM_053181	ENSMUSG00000022680	Pdxdc1	2210010A19Rik|AA415817|Kiaa0251-hp	pyridoxal-dependent decarboxylase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53429982-3	chr4	53429485	53430485	+	772.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10428.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	4.0	0.0	5.0	20.5	5.5	15.0
Merged-chr12-76496436-3	chr12	76495921	76496921	+	772.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36791.0	NR_039597	100628604.0		NR_039597	ENSMUSG00000092738	Mir5135	mir-5135|mmu-mir-5135|mu-mir-5135	microRNA 5135	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3587934-2	chr19	3587434	3588434	+	772.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008513, intron 21 of 22)	intron (NM_008513, intron 21 of 22)	-12185.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94920322-2	chr10	94919822	94920822	+	772.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 2 of 30)	intron (NM_018797, intron 2 of 30)	24256.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126537034-2	chr8	126536534	126537534	+	772.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56402.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-30554755-2	chr19	30554255	30555255	+	772.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5259.0	NM_010051	13380.0	Mm.214717	NM_010051	ENSMUSG00000024868	Dkk1	mdkk-1	dickkopf WNT signaling pathway inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114461426-2	chr5	114460926	114461926	+	772.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023556)	TTS (NM_023556)	17157.0	NM_023556	17855.0	Mm.28088	NM_023556	ENSMUSG00000041939	Mvk	2310010A05Rik|AI256848|AI414037|MK	mevalonate kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45042315-1	chr2	45041815	45042815	+	772.333313	f0_balb.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-19138.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-9647892-3	chr9	9647397	9648397	+	772.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-246534.0	NR_105745	102466147.0		NR_105745	ENSMUSG00000098408	Mir6237	Gm27411|mmu-mir-6237	microRNA 6237	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38632242-3	chr16	38631750	38632750	+	772.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 3 of 11)	B3|SINE|B2	69436.0	NM_026407	67846.0	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5054047-3	chr19	5053549	5054549	+	772.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145495, intron 9 of 9)	intron (NM_145495, intron 9 of 9)	3241.0	NM_145495	225870.0	Mm.271922	NM_145495	ENSMUSG00000024883	Rin1	-	Ras and Rab interactor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93598568-2	chr2	93598068	93599068	+	772.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43866.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	0.0	3.5	2.0	0.5	0.0	0.5
Merged-chr14-50905465-3	chr14	50904957	50905957	+	772.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12202.0	NM_001166651	546611.0	Mm.390692	NM_001166651	ENSMUSG00000090799	Klhl33	EG546611	kelch-like 33	protein-coding	3.5	2.0	2.5	0.0	1.0	5.0
Merged-chr4-123548297-3	chr4	123547810	123548810	+	772.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 2 of 92)	intron (NM_001199137, intron 2 of 92)	-68110.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118144706-2	chr11	118144206	118145206	+	772.299988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15487.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80043064-4	chr11	80042628	80043628	+	772.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	37863.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120405118-4	chr4	120404600	120405600	+	772.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159630)	promoter-TSS (NM_001159630)	-181.0	NM_001159630	29871.0	Mm.427014	NM_013883	ENSMUSG00000000085	Scmh1	AI315320|AI851618|Scml1|Scml3	sex comb on midleg homolog 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4045427-2	chr18	4044927	4045927	+	772.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120405.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80094308-2	chr7	80093808	80094808	+	772.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_173011)	TTS (NM_173011)	-19051.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	0.5	6.5	6.5	0.0	8.5	4.5
Merged-chr2-34763757-2	chr2	34763257	34764257	+	772.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-8333.0	NM_001163434	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36983905-2	chr15	36983405	36984405	+	772.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23497.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-9889588-6	chr2	9888988	9889988	+	772.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040511)	promoter-TSS (NR_040511)	52.0	NR_040511	77682.0	Mm.488621	NR_040511	ENSMUSG00000079602	9230102O04Rik	-	RIKEN cDNA 9230102O04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155943167-2	chr4	155942678	155943678	+	772.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039157)	promoter-TSS (NM_001039157)	-635.0	NM_001039158	140499.0	Mm.371673	NM_021402	ENSMUSG00000023286	Ube2j2	1200007B18Rik|2400008G19Rik|5730472G04Rik|AL022923|NCUBE-2|Ubc6|Ubc6p	ubiquitin-conjugating enzyme E2J 2	protein-coding	11.5	23.5	29.0	14.5	15.5	23.5
Merged-chr6-66964452-2	chr6	66963952	66964952	+	772.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177560, intron 3 of 4)	intron (NM_001177560, intron 3 of 4)	67561.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111311779-2	chr9	111311279	111312279	+	772.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164659)	promoter-TSS (NM_001164659)	40.0	NM_001164659	320429.0	Mm.270754	NM_001164659	ENSMUSG00000062296	Trank1	A230061D21Rik|C030048J01Rik|Gm187|Lba1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding	1.0	0.0	0.0	0.0	8.0	0.0
Merged-chr5-106802541-4	chr5	106801943	106802943	+	772.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105613.0	NM_026856	52397.0	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-69822911-3	chr2	69822384	69823384	+	772.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360394)	promoter-TSS (NM_001360394)	43.0	NM_001360394	277396.0	Mm.138073	NM_177784	ENSMUSG00000042155	Klhl23	C130068N17Rik	kelch-like 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125368608-6	chr5	125368105	125369105	+	772.230591	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	21412.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.0	3.5	0.0	0.0	0.0	0.0
Merged-chr19-46040400-3	chr19	46039926	46040926	+	772.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010697)	promoter-TSS (NM_010697)	-805.0	NM_010697	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-97567964-3	chr1	97567468	97568468	+	772.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93708.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37999339-4	chr1	37998829	37999829	+	772.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198303, intron 1 of 23)	intron (NM_198303, intron 1 of 23)	1319.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-75689000-8	chr12	75688344	75689344	+	772.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-19307.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-68349751-4	chr2	68349259	68350259	+	772.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 10 of 17)	intron (NM_016866, intron 10 of 17)	122222.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123575930-3	chr4	123575387	123576387	+	772.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-40533.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129130417-2	chr2	129129917	129130917	+	772.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_025395, exon 3 of 4)	exon (NM_025395, exon 3 of 4)	717.0	NM_025395	66170.0	Mm.40621	NM_025395	ENSMUSG00000037938	Chchd5	1110027L01Rik|AW045710	coiled-coil-helix-coiled-coil-helix domain containing 5	protein-coding	2.0	5.0	1.5	4.5	5.5	6.5
Merged-chr10-80903241-2	chr10	80902741	80903741	+	772.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_010722, exon 11 of 12)	exon (NM_010722, exon 11 of 12)	-2272.0	NM_013895	30055.0	Mm.142132	NM_013895	ENSMUSG00000020219	Timm13	D10Ertd378e|Tim9|Timm9	translocase of inner mitochondrial membrane 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105800219-2	chr3	105799719	105800719	+	772.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145541, intron 1 of 7)	intron (NM_145541, intron 1 of 7)	1162.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	47.5	115.0	116.0	16.5	104.0	62.0
Merged-chr18-44782605-2	chr18	44782105	44783105	+	772.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085373, intron 1 of 18)	MTD|LTR|ERVL-MaLR	29577.0	NM_001085373	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131041579-2	chr2	131041079	131042079	+	772.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_020014, exon 2 of 6)	exon (NM_020014, exon 2 of 6)	1103.0	NM_001271002	14588.0	Mm.198399	NM_020014	ENSMUSG00000027316	Gfra4	AW060733|G630015H18Rik	glial cell line derived neurotrophic factor family receptor alpha 4	protein-coding	0.0	2.5	0.0	0.0	0.0	2.5
Merged-chr2-180105178-2	chr2	180104678	180105678	+	772.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133849)	promoter-TSS (NM_133849)	-771.0	NM_133849	99296.0	Mm.285360	NM_133849	ENSMUSG00000039059	Hrh3	AW049250|H3R|HH3R	histamine receptor H3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6487330-4	chr19	6486804	6487804	+	772.145813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 11 of 22)	intron (NM_001205234, intron 11 of 22)	55766.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-172437125-2	chr2	172436625	172437625	+	772.142822	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3453.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11602186-3	chr8	11601698	11602698	+	772.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32838.0	NR_030781	102334.0	Mm.12459	NM_133971	ENSMUSG00000031508	Ankrd10	4833425P12Rik|AW549277	ankyrin repeat domain 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61092625-3	chr18	61092112	61093112	+	772.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	-12960.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-40412600-3	chr1	40412088	40413088	+	772.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-16982.0	NM_001294171	17082.0	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53460559-3	chr19	53460120	53461120	+	772.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028427, intron 2 of 9)	intron (NR_028427, intron 2 of 9)	4176.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	0.0	1.0	6.0	1.5	13.0	9.5
Merged-chr16-45967692-3	chr16	45967190	45968190	+	772.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152226, intron 2 of 2)	intron (NR_152226, intron 2 of 2)	22084.0	NR_152227	100503378.0	Mm.387133	NR_152226	ENSMUSG00000085826	Gm15638	Gm41457	predicted gene 15638	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55806470-3	chr19	55805970	55806970	+	772.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	64660.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	11.5	8.0	2.5	8.0	43.0	7.5
Merged-chr9-65826784-4	chr9	65826274	65827274	+	772.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172536, intron 1 of 9)	intron (NM_172536, intron 1 of 9)	790.0	NM_172536	214812.0	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44735944-4	chr10	44735427	44736427	+	772.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-277179.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173740805-5	chr1	173740298	173741298	+	772.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204910, intron 1 of 7)	intron (NM_001204910, intron 1 of 7)	1011.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	227.5	482.0	272.5	148.5	252.0	132.5
Merged-chr1-156041611-1	chr1	156041111	156042111	+	772.0	f1_c57bl6.idr	intron (NM_172843, intron 2 of 6)	PB1D9|SINE|Alu	750.0	NM_022329	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	96.0	160.0	117.0	42.5	141.5	94.5
Merged-chr9-119403650-2	chr9	119403150	119404150	+	772.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007397, intron 1 of 9)	intron (NM_007397, intron 1 of 9)	1472.0	NM_001313757	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	0.0	0.0	4.5	0.0	0.0	0.0
Merged-chr12-12325648-2	chr12	12325148	12326148	+	772.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 2 of 11)	intron (NM_001146119, intron 2 of 11)	63509.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	1.5	0.0	0.0	1.5	0.0	0.0
Merged-chr19-6405444-2	chr19	6404944	6405944	+	772.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011242, intron 8 of 16)	intron (NM_011242, intron 8 of 16)	4861.0	NM_011242	19395.0	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-88976407-2	chr11	88975922	88976922	+	772.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016706, intron 1 of 6)	intron (NM_016706, intron 1 of 6)	2487.0	NM_016706	12812.0	Mm.268004	NM_016706	ENSMUSG00000033983	Coil	C79982|Cln80|p80|p80-coilin	coilin	protein-coding	1.0	0.5	0.0	0.0	0.0	2.5
Merged-chr13-113865042-2	chr13	113864542	113865542	+	772.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	B3|SINE|B2	70534.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122616413-1	chr8	122615913	122616913	+	772.0	f1_balb.idr	TTS (NM_021502)	TTS (NM_021502)	4787.0	NM_021502	59005.0	Mm.38746	NM_021502	ENSMUSG00000015013	Trappc2l	1810017G16Rik|AB030200|Hspc176|Tca17	trafficking protein particle complex 2-like	protein-coding	2.0	1.0	0.0	1.5	5.5	3.5
Merged-chr4-53109458-1	chr4	53108958	53109958	+	772.0	f0_balb.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	50437.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.5	1.5	0.0	4.5	1.0
Merged-chr13-52072396-2	chr13	52071896	52072896	+	772.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24345.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43282843-4	chr7	43282285	43283285	+	772.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30515.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55322537-2	chr13	55322037	55323037	+	772.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009000)	promoter-TSS (NM_009000)	482.0	NM_025596	66494.0	Mm.439805	NM_025596	ENSMUSG00000021486	Prelid1	2610524G07Rik|Preli	PRELI domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78468433-2	chr11	78467933	78468933	+	772.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026740, intron 2 of 4)	intron (NM_026740, intron 2 of 4)	2732.0	NM_026740	52466.0	Mm.131618	NM_026740	ENSMUSG00000020829	Slc46a1	1110002C08Rik|D11Ertd18e|HCP1|Pcft	solute carrier family 46, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25376725-2	chr2	25376225	25377225	+	772.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001290407, exon 6 of 6)	3' UTR (NM_001290407, exon 6 of 6)	4690.0	NM_001081085	72080.0	Mm.250293	NM_001081085	ENSMUSG00000026955	Sapcd2	2010317E24Rik|6030458L21Rik|AL033337|ang	suppressor APC domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40660885-1	chr19	40660385	40661385	+	772.0	f0_balb.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	1115.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64986335-2	chr1	64985835	64986835	+	772.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29511.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146330341-2	chr5	146329841	146330841	+	772.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-54665.0	NM_145155	245880.0	Mm.472750	NM_145155	ENSMUSG00000029636	Wasf3	Scar3|Wave3	WAS protein family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27212161-2	chr7	27211661	27212661	+	772.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181593, intron 6 of 6)	intron (NM_181593, intron 6 of 6)	6625.0	NR_035422	100316839.0		NR_035422	ENSMUSG00000080533	Mir1191	Mirn1191|mmu-mir-1191|mmu-mir-1191a	microRNA 1191	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4101700-2	chr19	4101200	4102200	+	772.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008851, intron 1 of 22)	intron (NM_008851, intron 1 of 22)	1078.0	NM_008851	18739.0	Mm.1860	NM_008851	ENSMUSG00000024851	Pitpnm1	DRES9|Mpt-1|Nir-2|PITPnm 1|Pitpnm|R75447|Rd9|RdgB|RdgB1	phosphatidylinositol transfer protein, membrane-associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23573045-3	chr13	23572584	23573584	+	772.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178195)	TTS (NM_178195)	1106.0	NM_178195	319180.0		NM_178195	ENSMUSG00000069268	Hist1h2bf	-	histone cluster 1, H2bf	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-69196885-2	chr17	69196385	69197385	+	772.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	RLTR34D_MM|LTR|ERVK	37529.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63116814-2	chr14	63116314	63117314	+	772.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5648.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37164661-2	chr10	37164161	37165161	+	772.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-25735.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-36529055-3	chr13	36528555	36529555	+	772.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 5 of 5)	ORR1F|LTR|ERVL-MaLR	205422.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173217709-2	chr2	173217209	173218209	+	772.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001139519, intron 1 of 3)	PB1D7|SINE|Alu	1213.0	NM_021394	58203.0	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-66818929-2	chr1	66818429	66819429	+	772.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1334.0	NM_001122738	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-144769305-2	chr5	144768805	144769805	+	772.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081362, intron 1 of 70)	intron (NM_001081362, intron 1 of 70)	513.0	NM_001081362	100683.0	Mm.273570	NM_001081362	ENSMUSG00000045482	Trrap	AI481500	transformation/transcription domain-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-72084735-1	chr12	72084235	72085235	+	772.0	f0_balb.idr	exon (NM_026038, exon 1 of 5)	exon (NM_026038, exon 1 of 5)	578.0	NM_026038	67217.0	Mm.286120	NM_026038	ENSMUSG00000019718	L3hypdh	2810055F11Rik	L-3-hydroxyproline dehydratase (trans-)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40636251-2	chr9	40635774	40636774	+	772.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-49690.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	0.0	0.0	11.0	0.0	5.0	6.0
Merged-chr7-19263661-2	chr7	19263161	19264161	+	772.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282022, intron 3 of 12)	B1_Mus2|SINE|Alu	8193.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	10.0	6.5	20.0	11.5	16.5	12.0
Merged-chr2-166800438-2	chr2	166799938	166800938	+	772.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023815)	TTS (NM_023815)	-5143.0	NM_001085495	99371.0	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27404658-2	chr7	27404155	27405155	+	772.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_032610, exon 16 of 36)	exon (NM_032610, exon 16 of 36)	-8102.0	NM_001199236	80297.0	Mm.459123	NM_032610	ENSMUSG00000011751	Sptbn4	1700022P15Rik|5830426A08Rik|ROSA62|SpbIV|Spnb4|dyn|lnd|nmf261|nmf379|qv	spectrin beta, non-erythrocytic 4	protein-coding	0.0	0.0	0.0	0.0	3.0	1.0
Merged-chr17-10839595-2	chr17	10839095	10840095	+	772.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016694)	promoter-TSS (NM_016694)	596.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85229111-1	chr8	85228611	85229611	+	772.0	f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1386.0	NM_146859	258858.0	Mm.354727	NM_146859	ENSMUSG00000051952	Olfr371	MOR141-3	olfactory receptor 371	protein-coding	0.0	2.0	5.5	2.5	0.0	3.5
Merged-chr14-55103096-2	chr14	55102596	55103596	+	772.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007455, intron 10 of 21)	intron (NM_007455, intron 10 of 21)	3497.0	NM_001303502	11766.0	Mm.238879	NM_007455	ENSMUSG00000040701	Ap1g2	Adtg2|G2ad	adaptor protein complex AP-1, gamma 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27931596-2	chr15	27931096	27932096	+	772.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	B1_Mus2|SINE|Alu	94252.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17524584-2	chr17	17524084	17525084	+	772.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99905.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	0.5	3.0	0.5	3.0	0.0	1.0
Merged-chr7-99458582-2	chr7	99458086	99459086	+	772.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362168, intron 16 of 17)	intron (NM_001362168, intron 16 of 17)	-7418.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	2.0	0.0	3.0	2.0	0.0	1.5
Merged-chr19-12008944-2	chr19	12008444	12009444	+	772.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27796.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103332558-2	chr15	103332058	103333058	+	772.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356627, intron 2 of 7)	intron (NM_001356627, intron 2 of 7)	1780.0	NM_001356627	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83716008-2	chr11	83715508	83716508	+	772.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7004.0	NM_007969	14038.0	Mm.1650	NM_007969	ENSMUSG00000000983	Wfdc18	Expi|Kal1|WDNM1	WAP four-disulfide core domain 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126661782-1	chr8	126661282	126662282	+	772.0	f1_c57bl6.idr	Intergenic	Intergenic	-68346.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.5	6.0	2.0	1.0	1.5	6.0
Merged-chr19-42780334-1	chr19	42779834	42780834	+	772.0	f1_balb.idr	promoter-TSS (NM_001346703)	promoter-TSS (NM_001346703)	-356.0	NM_019424	192236.0	Mm.218381	NM_019424	ENSMUSG00000025188	Hps1	6030422N11Rik|BB405864|Gm21361|Hps|ep	HPS1, biogenesis of lysosomal organelles complex 3 subunit 1	protein-coding	81.0	255.0	180.0	43.0	150.5	106.0
Merged-chr19-36800100-2	chr19	36799600	36800600	+	772.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34132.0	NM_001163635	74493.0	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	0.0	1.5	3.0	0.0	0.0	0.0
Merged-chr3-144470559-3	chr3	144470046	144471046	+	772.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355234, intron 1 of 6)	intron (NM_001355234, intron 1 of 6)	99670.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-43174208-2	chr10	43173708	43174708	+	772.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102361)	promoter-TSS (NR_102361)	322.0	NM_175407	109205.0	Mm.153750	NM_175407	ENSMUSG00000038248	Sobp	2900009C16Rik|5330439J01Rik|JXC1|jc	sine oculis binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65504670-1	chr18	65504170	65505170	+	772.0	f1_balb.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	73673.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	26.0	75.0	40.5	54.0	165.0	87.0
Merged-chr4-84065342-1	chr4	84064842	84065842	+	772.0	f0_balb.idr	Intergenic	Intergenic	-20463.0	NR_130998	78238.0	Mm.243903	NR_130998	ENSMUSG00000085217	6030471H07Rik	-	RIKEN cDNA 6030471H07 gene	ncRNA	1.0	0.0	0.0	10.0	6.0	3.0
Merged-chr9-105803600-2	chr9	105803111	105804111	+	772.0	f0_balb.idr|f1_balb.idr	intron (NM_001102607, intron 1 of 36)	ORR1E|LTR|ERVL-MaLR	6037.0	NM_172927	245026.0	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding	1.0	1.0	5.5	1.0	1.0	5.5
Merged-chr7-132475258-3	chr7	132474795	132475795	+	772.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	101103.0	NM_016978	18242.0	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78754057-5	chr15	78753536	78754536	+	771.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19409.0	NM_008595	17305.0	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.5	7.0	12.5	9.5	23.5	11.0
Merged-chr6-129631221-4	chr6	129630738	129631738	+	771.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-7374.0	NM_001286018	27007.0	Mm.8217	NM_033078	ENSMUSG00000030149	Klrk1	D6H12S2489E|NKG2-D|Nkg2d	killer cell lectin-like receptor subfamily K, member 1	protein-coding	3.0	2.5	6.0	0.5	1.5	1.0
Merged-chr10-87649126-2	chr10	87648626	87649626	+	771.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	127331.0	NM_008777	18478.0	Mm.263539	NM_008777	ENSMUSG00000020051	Pah	AW106920	phenylalanine hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-19733122-3	chr16	19732621	19733621	+	771.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26756.0	NM_177356	239739.0	Mm.258059	NM_177356	ENSMUSG00000041247	Lamp3	1200002D17Rik|Cd208|DC-LAMP|DCLAMP|LAMP|TSC403	lysosomal-associated membrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-79508093-3	chr14	79507621	79508621	+	771.883362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 1 of 8)	ID4_|SINE|ID	-7553.0	NM_001286412	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-106988154-4	chr4	106987642	106988642	+	771.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355532, intron 1 of 14)	intron (NM_001355532, intron 1 of 14)	64957.0	NM_001355532	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-111282480-4	chr11	111281990	111282990	+	771.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	216326.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	0.0	3.5	3.5	0.0	5.0	3.5
Merged-chr6-108055264-4	chr6	108054762	108055762	+	771.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9783.0	NM_001276356	74729.0	Mm.56539	NM_178391	ENSMUSG00000034639	Setmar	5830404F24Rik|Etet2	SET domain without mariner transposase fusion	protein-coding	1.5	0.0	0.0	0.5	4.0	1.0
Merged-chr11-21377742-3	chr11	21377253	21378253	+	771.844421	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GAA)n|Simple_repeat|Simple_repeat	-6486.0	NM_001290634	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	19.0	74.0	64.5	22.5	30.0	33.5
Merged-chr10-14045967-2	chr10	14045530	14046530	+	771.833374	f0_c57.idr|f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	79651.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	8.0	18.5	13.5	1.0	2.5	3.5
Merged-chr7-119881402-2	chr7	119880902	119881902	+	771.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163703, intron 1 of 2)	intron (NM_001163703, intron 1 of 2)	14056.0	NM_173408	233805.0	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	2.5	1.5	2.0	2.0	12.0	4.0
Merged-chr17-35865111-4	chr17	35864693	35865693	+	771.825012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146711)	promoter-TSS (NM_001146711)	-402.0	NM_001146711	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	7.0	12.5	15.0	5.5	3.0	6.5
Merged-chr2-148444992-3	chr2	148444473	148445473	+	771.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1438.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0.0	1.5	0.0	0.0	1.5	0.0
Merged-chr9-118653079-6	chr9	118652510	118653510	+	771.777771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 5 of 27)	intron (NM_133721, intron 5 of 27)	46301.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167055246-3	chr2	167054721	167055721	+	771.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033196, exon 3 of 14)	exon (NM_001033196, exon 3 of 14)	-7713.0	NR_138563	68949.0	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-77356155-3	chr1	77355646	77356646	+	771.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	140622.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	0.0	7.0	3.0	4.0	2.0	0.0
Merged-chr9-108575598-2	chr9	108575098	108576098	+	771.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_031392, exon 2 of 6)	exon (NM_031392, exon 2 of 6)	3072.0	NM_031392	83669.0	Mm.335454	NM_031392	ENSMUSG00000066357	Wdr6	mWDR6	WD repeat domain 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-54134291-2	chr10	54133791	54134791	+	771.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58369.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64313663-2	chr15	64313163	64314163	+	771.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276462)	promoter-TSS (NM_001276462)	-990.0	NM_001276463	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19312243-2	chr7	19311743	19312743	+	771.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-2198.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-83488811-2	chr9	83488311	83489311	+	771.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47684.0	NM_029434	75782.0	Mm.199698	NM_027448	ENSMUSG00000032258	Lca5	4930431B11Rik|5730406O13Rik|AV274874|ORF64	Leber congenital amaurosis 5 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12031435-4	chr17	12030988	12031988	+	771.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016694, intron 10 of 11)	intron (NM_016694, intron 10 of 11)	-87796.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr12-108643051-2	chr12	108642551	108643551	+	771.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	7298.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150837598-4	chr4	150837105	150838105	+	771.729187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040649, intron 3 of 3)	intron (NR_040649, intron 3 of 3)	-16191.0	NM_001356323	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25773896-4	chr14	25773378	25774378	+	771.729187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5022.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-66741956-3	chr10	66741464	66742464	+	771.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	178420.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67360057-3	chr7	67359574	67360574	+	771.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 1 of 11)	L1MC4|LINE|L1	12784.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3224056-3	chr5	3223554	3224554	+	771.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119839.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75062003-2	chr10	75061503	75062503	+	771.714233	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081412, exon 1 of 23)	exon (NM_001081412, exon 1 of 23)	1107.0	NM_001081412	110279.0	Mm.333722	NM_001081412	ENSMUSG00000009681	Bcr	5133400C09Rik|AI561783|AI853148|mKIAA3017	breakpoint cluster region	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-109596848-4	chr5	109596335	109597335	+	771.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37842.0	NM_001310694	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	3.0	0.0	1.0	0.0	1.0	4.0
Merged-chr4-133513168-4	chr4	133512668	133513668	+	771.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5795.0	NM_001083916	69073.0	Mm.299081	NM_133707	ENSMUSG00000037600	Kdf1	1810019J16Rik	keratinocyte differentiation factor 1	protein-coding	0.0	3.0	12.5	1.5	6.0	0.0
Merged-chr16-76561884-3	chr16	76561388	76562388	+	771.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	13093.0	NR_155449	102632730.0		NR_155449		Gm30726	-	predicted gene, 30726	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32217094-4	chr11	32216622	32217622	+	771.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010117, intron 1 of 17)	intron (NM_010117, intron 1 of 17)	5171.0	NM_010117	13650.0	Mm.11545	NM_010117	ENSMUSG00000020282	Rhbdf1	C16ORF8|Dist|Dist1|Egfr-rs|mKIAA4242	rhomboid 5 homolog 1	protein-coding	0.0	8.0	2.0	0.0	0.5	1.5
Merged-chr9-119979110-3	chr9	119978615	119979615	+	771.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153287, intron 1 of 4)	L2|LINE|L2	3908.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81655488-3	chr13	81655023	81656023	+	771.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2283.0	NM_030257	80289.0	Mm.259969	NM_030257	ENSMUSG00000035840	Lysmd3	1110030H10Rik|BC003322	LysM, putative peptidoglycan-binding, domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-114199275-3	chr2	114198777	114199777	+	771.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175466, intron 1 of 1)	intron (NM_175466, intron 1 of 1)	2155.0	NM_175466	228491.0	Mm.132523	NM_175466	ENSMUSG00000040321	Zfp770	6430601A21Rik|Znf770	zinc finger protein 770	protein-coding	0.0	2.5	1.0	1.0	8.0	7.0
Merged-chr10-81367439-2	chr10	81366939	81367939	+	771.666687	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019757, exon 14 of 14)	3' UTR (NM_019757, exon 14 of 14)	-1619.0	NM_001014836	432479.0	Mm.440450	NM_001014836	ENSMUSG00000020234	4930404N11Rik	2210409H10Rik|5730551K18Rik|AI854616	RIKEN cDNA 4930404N11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-117328957-3	chr3	117328449	117329449	+	771.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177664, intron 3 of 6)	intron (NM_177664, intron 3 of 6)	31927.0	NM_177664	229791.0	Mm.140138	NM_177664	ENSMUSG00000044667	Plppr4	A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455	phospholipid phosphatase related 4	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr12-82387238-2	chr12	82386738	82387738	+	771.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 9 of 23)	intron (NM_001167983, intron 9 of 23)	75889.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134967876-3	chr1	134967408	134968408	+	771.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026024, intron 2 of 6)	intron (NM_026024, intron 2 of 6)	5343.0	NM_001278115	67196.0	Mm.284587	NM_026024	ENSMUSG00000026429	Ube2t	2700084L22Rik|C80607	ubiquitin-conjugating enzyme E2T	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21384874-4	chr5	21384462	21385462	+	771.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	12289.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82479891-4	chr18	82479387	82480387	+	771.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025245, intron 1 of 3)	intron (NM_001025245, intron 1 of 3)	4764.0	NM_010777	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44483986-2	chr9	44483486	44484486	+	771.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357490, intron 1 of 7)	intron (NM_001357490, intron 1 of 7)	1161.0	NM_001357490	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	2.0	4.0	5.5	2.0	4.0	4.0
Merged-chr12-34779529-3	chr12	34779038	34780038	+	771.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	137557.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	37.5	45.5	24.5	26.0	37.5	19.0
Merged-chr19-4628985-3	chr19	4628503	4629503	+	771.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033447, intron 13 of 14)	intron (NM_001033447, intron 13 of 14)	-3386.0	NM_023131	19671.0	Mm.391143	NM_023131	ENSMUSG00000024889	Rce1	D19Ertd283e|D19Ertd98e	Ras converting CAAX endopeptidase 1	protein-coding	0.0	6.5	0.5	3.5	0.0	2.5
Merged-chr14-50837443-3	chr14	50836943	50837943	+	771.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009351, exon 37 of 55)	exon (NM_009351, exon 37 of 55)	29527.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	135.0	223.0	219.5	93.0	211.5	95.5
Merged-chr17-12029585-3	chr17	12029124	12030124	+	771.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016694, intron 10 of 11)	intron (NM_016694, intron 10 of 11)	-89660.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	0.5	12.5	0.5	11.5	0.0	0.0
Merged-chr19-42080779-2	chr19	42080279	42081279	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198108, intron 1 of 4)	intron (NM_198108, intron 1 of 4)	5591.0	NM_198108	226123.0	Mm.259441	NM_198108	ENSMUSG00000049670	Morn4	-	MORN repeat containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91019112-2	chr1	91018612	91019612	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	20385.0	NM_001111312	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-142542116-2	chr1	142541616	142542616	+	771.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26|LTR|ERVK	-1098581.0	NM_020025	26878.0	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102234713-2	chr15	102234213	102235213	+	771.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011244)	TTS (NM_011244)	-2778.0	NM_013566	16421.0	Mm.58	NM_013566	ENSMUSG00000001281	Itgb7	Ly69	integrin beta 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84226937-2	chr8	84226437	84227437	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172503, intron 5 of 13)	intron (NM_172503, intron 5 of 13)	10105.0	NM_172503	212168.0	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	1.5	0.0	8.5	0.5	0.0	2.5
Merged-chr14-30882911-2	chr14	30882411	30883411	+	771.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-3565.0	NM_001159299	16427.0	Mm.34819	NM_018746	ENSMUSG00000021922	Itih4	ITI-HC4|Itih-4|PK-120	inter alpha-trypsin inhibitor, heavy chain 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-100492323-2	chr3	100491823	100492823	+	771.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3131.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57913612-2	chr15	57913112	57914112	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356310, intron 1 of 19)	RMER6A|LTR|ERVK	1413.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32435403-2	chr12	32434931	32435931	+	771.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	56642.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	8.0	0.0	1.5	6.0	3.0	3.5
Merged-chr4-134925637-2	chr4	134925137	134926137	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023665, intron 3 of 4)	intron (NM_023665, intron 3 of 4)	2012.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81397888-2	chr10	81397388	81398388	+	771.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008688, exon 10 of 10)	3' UTR (NM_008688, exon 10 of 10)	4824.0	NM_001099917	72273.0	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44858612-2	chr7	44858112	44859112	+	771.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_021549, exon 3 of 16)	exon (NM_021549, exon 3 of 16)	1209.0	NM_001290767	59047.0	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	4.0	0.0	13.5	5.5	4.0	2.5
Merged-chr10-80105097-2	chr10	80104597	80105597	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	ID_B1|SINE|B4	-2395.0	NM_001359637	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155062843-2	chr1	155062343	155063343	+	771.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_151545)	TTS (NR_151545)	20421.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100966928-2	chr7	100966428	100967428	+	771.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2562.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr10-111724131-2	chr10	111723631	111724631	+	771.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-129858.0	NR_045344	71321.0	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58421583-2	chr1	58421083	58422083	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042634, intron 2 of 12)	intron (NM_001042634, intron 2 of 12)	2505.0	NR_027854	12747.0	Mm.1761	NM_009905	ENSMUSG00000026034	Clk1	STY	CDC-like kinase 1	protein-coding	0.5	1.0	2.5	3.5	0.0	1.0
Merged-chr1-170170434-2	chr1	170169934	170170934	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133806, intron 1 of 10)	intron (NM_133806, intron 1 of 10)	4530.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-105444528-2	chr13	105444028	105445028	+	771.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008308, exon 1 of 1)	exon (NM_008308, exon 1 of 1)	835.0	NM_008308	15550.0	Mm.4716	NM_008308	ENSMUSG00000021721	Htr1a	Gpcr18	5-hydroxytryptamine (serotonin) receptor 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-117507911-2	chr12	117507411	117508411	+	771.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-8568.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71478267-1	chr6	71477767	71478767	+	771.5	f0_balb.idr	Intergenic	Intergenic	-15610.0	NM_009543	22644.0	Mm.422969	NM_009543	ENSMUSG00000052656	Rnf103	AW146237|AW212918|Zfp103|kf-1	ring finger protein 103	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137288353-2	chr5	137287853	137288853	+	771.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290010)	promoter-TSS (NM_001290010)	99.0	NM_001290010	11423.0	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93849221-2	chr2	93848721	93849721	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290782, intron 1 of 14)	intron (NM_001290782, intron 1 of 14)	578.0	NM_183220	329470.0	Mm.486910	NM_183220	ENSMUSG00000040272	Accs	2610203E10Rik|Phacs	1-aminocyclopropane-1-carboxylate synthase (non-functional)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32232530-2	chr17	32232030	32233030	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020508, intron 2 of 19)	intron (NM_020508, intron 2 of 19)	-9390.0	NR_102329	100043434.0		NR_102329		Gm4432	-	predicted gene 4432	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81395293-6	chr10	81394737	81395737	+	771.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008688)	TTS (NM_008688)	2173.0	NM_001099917	72273.0	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122558292-2	chr14	122557792	122558792	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 2 of 24)	intron (NR_153443, intron 2 of 24)	23964.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-21820339-1	chr3	21819839	21820839	+	771.5	f0_balb.idr	Intergenic	Intergenic	-256313.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69992179-2	chr11	69991679	69992679	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019749, intron 1 of 3)	intron (NM_019749, intron 1 of 3)	809.0	NM_019749	56486.0	Mm.272460	NM_019749	ENSMUSG00000018567	Gabarap	-	gamma-aminobutyric acid receptor associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-97389774-3	chr10	97389272	97390272	+	771.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33706.0	NR_039547	100628616.0		NR_039547	ENSMUSG00000105557	Mir3966	mmu-mir-3966|mu-mir-3966	microRNA 3966	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-124940232-2	chr4	124939732	124940732	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355603, intron 3 of 5)	BC1_Mm|scRNA|scRNA	3184.0	NM_001355603	194268.0	Mm.266907	NM_177573	ENSMUSG00000044730	9930104L06Rik	C1orf109	RIKEN cDNA 9930104L06 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-88222135-1	chr11	88221635	88222635	+	771.5	f0_balb.idr	Intergenic	Eulor3|DNA?|DNA?	17747.0	NM_001291271	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr10-120228686-2	chr10	120228166	120229166	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025431, intron 2 of 2)	intron (NM_025431, intron 2 of 2)	1606.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	6.0	18.0	2.5	6.5	1.5	1.5
Merged-chr4-132607714-2	chr4	132607225	132608225	+	771.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-31321.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	2.5	1.5	1.5	3.0	10.5	1.5
Merged-chr7-6153806-2	chr7	6153306	6154306	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013012, intron 1 of 2)	intron (NM_001013012, intron 1 of 2)	2165.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27927161-3	chr15	27926643	27927643	+	771.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	98705.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191956554-2	chr1	191956054	191957054	+	771.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20816.0	NM_001177900	74023.0	Mm.274393	NM_023727	ENSMUSG00000049353	Rd3	3322402L07Rik|rd-3|rd3	retinal degeneration 3	protein-coding	1.5	1.0	2.0	1.5	14.5	6.5
Merged-chr2-26091052-2	chr2	26090552	26091552	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026495, intron 1 of 5)	intron (NM_026495, intron 1 of 5)	1344.0	NM_001037098	67991.0	Mm.131074	NM_026495	ENSMUSG00000026932	Nacc2	0610020I02Rik|AI448087|Btbd14a|C030048H19Rik	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101763078-2	chr7	101762578	101763578	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009191, intron 6 of 15)	intron (NM_009191, intron 6 of 15)	-55235.0	NM_008887	11859.0	Mm.5028	NM_008887	ENSMUSG00000007946	Phox2a	Arix|Phox2|Pmx2|Pmx2a|Px2a	paired-like homeobox 2a	protein-coding	1.5	0.0	0.0	0.0	1.0	0.0
Merged-chr4-107966629-2	chr4	107966129	107967129	+	771.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1705.0	NM_146255	242607.0	Mm.192040	NM_146255	ENSMUSG00000008932	Slc1a7	A930031E15Rik|Eaat5	solute carrier family 1 (glutamate transporter), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126156149-5	chr4	126155566	126156566	+	771.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025856, intron 6 of 11)	intron (NM_025856, intron 6 of 11)	6599.0	NM_025856	66938.0	Mm.29813	NM_025856	ENSMUSG00000073758	Sh3d21	1700029G01Rik|AU019788	SH3 domain containing 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-56375944-4	chr14	56375443	56376443	+	771.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138652, intron 10 of 22)	intron (NM_138652, intron 10 of 22)	10875.0	NM_138652	192113.0	Mm.273271	NM_138652	ENSMUSG00000022229	Atp12a	Atp1al1|HKalpha2|cHKA	ATPase, H+/K+ transporting, nongastric, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-73186277-4	chr11	73185788	73186788	+	771.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357891, intron 10 of 11)	intron (NM_001357891, intron 10 of 11)	9205.0	NM_029564	76281.0	Mm.371656	NM_029564	ENSMUSG00000040158	Tax1bp3	1300011C24Rik|TIP-1	Tax1 (human T cell leukemia virus type I) binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-9555555-4	chr14	9555062	9556062	+	771.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 9 of 9)	intron (NM_001360141, intron 9 of 9)	-328533.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38007651-2	chr6	38007151	38008151	+	771.416687	f1_balb.idr|f1_c57bl6.idr	intron (NM_177200, intron 14 of 15)	intron (NM_177200, intron 14 of 15)	39345.0	NM_177200	320590.0	Mm.197449	NM_177200	ENSMUSG00000029830	Svopl	9430071P14Rik	SV2 related protein homolog (rat)-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-96559337-2	chr13	96558837	96559837	+	771.416687	f1_balb.idr|f1_c57bl6.idr	intron (NM_023420, intron 2 of 17)	intron (NM_023420, intron 2 of 17)	16602.0	NM_023420	68018.0	Mm.24125	NM_023420	ENSMUSG00000021669	Col4a3bp	2810404O15Rik|9230101K08Rik|AU016711|CERT|GPBP	collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-85383595-4	chr15	85383066	85384066	+	771.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016843, intron 6 of 11)	intron (NM_016843, intron 6 of 11)	47185.0	NM_016843	54138.0	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73584796-4	chr2	73584291	73585291	+	771.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153820)	promoter-TSS (NR_153820)	-69.0	NR_153820	102633437.0		NR_153820		Chrna1os	Gm13705|Gm31264	cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle), opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65951335-2	chr5	65950835	65951835	+	771.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15789.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-108224247-2	chr11	108223747	108224747	+	771.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	119641.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95963868-2	chr10	95963368	95964368	+	771.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001932, intron 1 of 28)	ORR1B2|LTR|ERVL-MaLR	23205.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146749957-2	chr6	146749457	146750457	+	771.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346666, intron 1 of 11)	intron (NM_001346666, intron 1 of 11)	25027.0	NM_172734	232533.0	Mm.322121	NM_172734	ENSMUSG00000001630	Stk38l	4930473A22Rik|Ndr2|Ndr54	serine/threonine kinase 38 like	protein-coding	1.0	1.5	0.0	7.0	2.0	1.0
Merged-chr5-53355262-3	chr5	53354761	53355761	+	771.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88155.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150194042-3	chr4	150193508	150194508	+	771.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009802, intron 4 of 7)	intron (NM_009802, intron 4 of 7)	7127.0	NM_009802	12353.0	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	0.0	4.0	0.0	0.0	4.5	4.5
Merged-chr12-36363827-3	chr12	36363322	36364322	+	771.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17628.0	NM_001289504	75847.0	Mm.261764	NM_178629	ENSMUSG00000043153	Ispd	4930579E17Rik|AV040780	isoprenoid synthase domain containing	protein-coding	13.0	7.0	7.5	3.0	6.5	0.5
Merged-chr11-65794999-3	chr11	65794497	65795497	+	771.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-6638.0	NM_001316367	26398.0	Mm.412922	NM_009157	ENSMUSG00000033352	Map2k4	JNKK1|MEK4|MKK4|PRKMK4|Sek1|Serk1	mitogen-activated protein kinase kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80777625-3	chr18	80777132	80778132	+	771.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015805, intron 14 of 28)	intron (NM_015805, intron 14 of 28)	-64561.0	NM_001164110	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	4.0	0.0	0.0	1.0	0.0	0.0
Merged-chr13-92940807-3	chr13	92940295	92941295	+	771.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96008.0	NM_001162945	382793.0	Mm.296770	NM_001162945	ENSMUSG00000021704	Mtx3	4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514	metaxin 3	protein-coding	1.5	1.0	2.0	2.5	0.0	2.0
Merged-chr11-98217626-3	chr11	98217131	98218131	+	771.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026952, intron 2 of 12)	intron (NM_026952, intron 2 of 12)	14326.0	NM_001109626	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-133856398-3	chr1	133855922	133856922	+	771.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50751.0	NM_054076	269120.0	Mm.59985	NM_054076	ENSMUSG00000010311	Optc	-	opticin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5109912-4	chr11	5109387	5110387	+	771.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080595, intron 14 of 14)	intron (NM_080595, intron 14 of 14)	9722.0	NM_001290493	279766.0	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	6.5	0.0	1.0	2.0	5.5	11.0
Merged-chr6-83690443-4	chr6	83689952	83690952	+	771.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-12595.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5292942-3	chr6	5292445	5293445	+	771.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183308, intron 1 of 8)	intron (NM_183308, intron 1 of 8)	5428.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	13.5	5.0	5.0	11.0	3.0	3.5
Merged-chr4-15959272-3	chr4	15958846	15959846	+	771.299988	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013752, intron 1 of 15)	intron (NM_013752, intron 1 of 15)	1379.0	NM_013752	27354.0	Mm.20866	NM_013752	ENSMUSG00000028224	Nbn	Nbs1	nibrin	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr3-116437119-4	chr3	116436621	116437621	+	771.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER72|LTR|ERV1	-13089.0	NM_001173553	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141387562-3	chr4	141387075	141388075	+	771.266663	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024412, intron 16 of 19)	B3|SINE|B2	10524.0	NM_001146307	12733.0	Mm.167900	NM_024412	ENSMUSG00000033770	Clcnka	C75963|CLC-K1|Clcnk1	chloride channel, voltage-sensitive Ka	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-8811059-2	chr16	8810559	8811559	+	771.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19041.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25873564-2	chr17	25873064	25874064	+	771.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1936.0	NM_026686	68347.0	Mm.35098	NM_026686	ENSMUSG00000025731	Mettl26	0610011F06Rik	methyltransferase like 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-87414311-2	chr12	87413811	87414811	+	771.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	23446.0	NR_037228	100526546.0		NR_037228	ENSMUSG00000105428	Mir3068	mir-3068|mmu-mir-3068	microRNA 3068	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-89118452-2	chr2	89117952	89118952	+	771.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-5942.0	NM_146902	258904.0	Mm.330377	NM_146902	ENSMUSG00000075102	Olfr1221	MOR233-3	olfactory receptor 1221	protein-coding	0.5	8.0	2.5	0.5	3.5	0.0
Merged-chr19-16280955-2	chr19	16280455	16281455	+	771.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 2 of 6)	intron (NM_008139, intron 2 of 6)	34049.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27030822-4	chr2	27030320	27031320	+	771.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2822.0	NM_001177627	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30583487-2	chr13	30582987	30583987	+	771.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31556.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112833707-2	chr12	112833215	112834215	+	771.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4194.0	NM_001359234	71963.0	Mm.313185	NM_028023	ENSMUSG00000047832	Cdca4	2410018C03Rik|HEPP|SEI-3	cell division cycle associated 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116140207-2	chr11	116139707	116140707	+	771.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-1339.0	NM_024177	60441.0	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	4.0	0.0	0.0	0.0	0.0	1.0
Merged-chr7-27860014-3	chr7	27859502	27860502	+	771.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024726)	promoter-TSS (NM_001024726)	-583.0	NM_001024726	545938.0	Mm.458180	NM_001024726	ENSMUSG00000020420	Zfp607a	4732475C15Rik|Zfp607	zinc finger protein 607A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64224917-3	chr5	64224412	64225412	+	771.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-5445.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-82030547-3	chr3	82030062	82031062	+	771.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33640.0	NM_021370	58170.0	Mm.88839	NM_021370	ENSMUSG00000028008	Asic5	Accn5|Blinac|Inac	acid-sensing (proton-gated) ion channel family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114658252-3	chr5	114657563	114658563	+	771.211121	f1_balb.idr|f1_c57bl6.idr	intron (NM_022017, intron 1 of 15)	CpG	358.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	12.5	22.5	28.0	19.5	23.5	22.5
Merged-chr10-22141077-4	chr10	22140628	22141628	+	771.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254744, intron 1 of 1)	MuRRS-int|LTR|ERV1	8142.0	NM_001254744	319887.0	Mm.177746	NM_001254744	ENSMUSG00000097327	E030030I06Rik	-	RIKEN cDNA E030030I06 gene	protein-coding	4.5	8.0	5.5	0.0	1.5	5.0
Merged-chr9-118041781-4	chr9	118041269	118042269	+	771.1750490000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286507, intron 1 of 6)	intron (NM_001286507, intron 1 of 6)	1247.0	NM_013727	27215.0	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	0.0	1.0	2.5	0.0	1.0	0.0
Merged-chr1-177248875-3	chr1	177248336	177249336	+	771.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011785)	promoter-TSS (NM_011785)	-69.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23274658-3	chr16	23274045	23275045	+	771.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-15925.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49045841-3	chr16	49045335	49046335	+	771.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-11651.0	NM_001166210	667772.0	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60757092-6	chr18	60756507	60757507	+	771.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8342.0	NM_008306	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-7851943-4	chr14	7851437	7852437	+	771.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081427, intron 1 of 45)	intron (NM_001081427, intron 1 of 45)	33980.0	NM_134080	286940.0	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80935495-2	chr18	80934995	80935995	+	771.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1437.0	NM_015805	50771.0	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8576574-2	chr11	8576070	8577070	+	771.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	87965.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	7.0	52.0	33.5	13.0	78.5	53.5
Merged-chr3-101552888-5	chr3	101552446	101553446	+	771.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	51761.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	5.5	7.0	20.0	5.0	10.5	14.0
Merged-chr17-25820001-2	chr17	25819501	25820501	+	771.125	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164225, exon 6 of 6)	3' UTR (NM_001164225, exon 6 of 6)	-3626.0	NM_173741	268933.0	Mm.95512	NM_173741	ENSMUSG00000025737	Wdr24	BC037651	WD repeat domain 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65952081-4	chr3	65951560	65952560	+	771.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019937, intron 3 of 10)	intron (NM_019937, intron 3 of 10)	6189.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	19.5	34.5	26.5	9.0	55.0	25.0
Merged-chr15-102525299-4	chr15	102524831	102525831	+	771.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018787)	promoter-TSS (NM_018787)	-710.0	NM_018787	54615.0	Mm.445915	NM_018787	ENSMUSG00000023052	Npff	-	neuropeptide FF-amide peptide precursor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-125386844-3	chr10	125386338	125387338	+	771.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57875.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	19.5	24.0	20.5	24.5	11.5	20.0
Merged-chr2-103927671-3	chr2	103927172	103928172	+	771.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26721.0	NR_131913	100996933.0	Mm.394449	NR_131913		Lincred1	-	long intergenic non-protein coding RNA of erythroid differentiation 1	ncRNA	3.5	2.5	0.0	0.0	0.0	0.0
Merged-chr7-25006814-3	chr7	25006318	25007318	+	771.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290469)	promoter-TSS (NM_001290469)	-881.0	NM_001290469	232975.0	Mm.44101	NM_144921	ENSMUSG00000040907	Atp1a3	Atpa-2	ATPase, Na+/K+ transporting, alpha 3 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-5236724-4	chr15	5236225	5237225	+	771.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136079, intron 2 of 2)	intron (NM_001136079, intron 2 of 2)	7462.0	NM_001136079	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-36271942-3	chr2	36271461	36272461	+	771.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41535.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-137942891-3	chr2	137942366	137943366	+	771.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-313718.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35054271-2	chr7	35053771	35054771	+	771.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009884, intron 1 of 1)	intron (NM_009884, intron 1 of 1)	2295.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148491681-1	chr4	148491181	148492181	+	771.0	f1_c57bl6.idr	exon (NM_020009, exon 28 of 58)	exon (NM_020009, exon 28 of 58)	8781.0	NM_001039554	654812.0	Mm.388929	NM_001039554	ENSMUSG00000028989	Angptl7	-	angiopoietin-like 7	protein-coding	0.0	0.0	2.0	9.5	0.0	0.5
Merged-chr8-67855835-1	chr8	67855335	67856335	+	771.0	f0_balb.idr	intron (NM_177698, intron 8 of 14)	intron (NM_177698, intron 8 of 14)	-37540.0	NM_027626	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83587615-2	chr11	83587115	83588115	+	771.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009139)	TTS (NM_009139)	5472.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60206247-2	chr11	60205747	60206747	+	771.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001358314, exon 4 of 19)	exon (NM_001358314, exon 4 of 19)	-3920.0	NR_105887	102465556.0		NR_105887	ENSMUSG00000099259	Mir6922	Gm27269|mmu-mir-6922	microRNA 6922	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76996711-2	chr11	76996190	76997190	+	771.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1907.0	NM_010484	15567.0	Mm.300318	NM_010484	ENSMUSG00000020838	Slc6a4	5-HTT|AI323329|Htt|Sert	solute carrier family 6 (neurotransmitter transporter, serotonin), member 4	protein-coding	0.0	2.5	0.0	0.0	0.0	0.0
Merged-chr9-63592829-2	chr9	63592329	63593329	+	771.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030068, intron 3 of 21)	intron (NM_030068, intron 3 of 21)	9664.0	NM_030068	78250.0	Mm.444612	NM_030068	ENSMUSG00000037801	Iqch	4921504K03Rik	IQ motif containing H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122402612-2	chr5	122402112	122403112	+	771.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019824, intron 3 of 6)	intron (NM_019824, intron 3 of 6)	10734.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132572279-2	chr4	132571779	132572779	+	771.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081211, intron 1 of 1)	MT2B|LTR|ERVL	8212.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-55257432-1	chr5	55256932	55257932	+	771.0	f1_c57bl6.idr	Intergenic	RLTR6-int|LTR|ERV1	907440.0	NR_038045	330086.0	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13	predicted gene 10440	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77936118-2	chr10	77935618	77936618	+	771.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 13 of 33)	intron (NM_138301, intron 13 of 33)	-33582.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45942735-2	chr9	45942235	45943235	+	771.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172257, exon 20 of 26)	exon (NM_172257, exon 20 of 26)	-3145.0	NR_106055	102465659.0		NR_106055	ENSMUSG00000098327	Mir7087	Gm27273|mmu-mir-7087	microRNA 7087	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-117585311-2	chr6	117584811	117585811	+	771.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	90076.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122280707-3	chr8	122280124	122281124	+	771.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1517.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	0.0	0.0	0.0	0.0	6.5	0.0
Merged-chr13-51744335-2	chr13	51743835	51744835	+	771.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281880, intron 2 of 16)	intron (NM_001281880, intron 2 of 16)	49412.0	NM_001281880	20354.0	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-14476250-2	chr16	14475750	14476750	+	771.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A2|LTR|ERVK	-86067.0	NR_033556	545280.0	Mm.123679	NR_033556		A630010A05Rik	-	RIKEN cDNA A630010A05 gene	ncRNA	0.0	0.0	0.0	5.0	0.0	0.0
Merged-chr10-75505725-2	chr10	75505225	75506225	+	771.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	11656.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-109951804-1	chr6	109951304	109952304	+	771.0	f1_c57bl6.idr	Intergenic	Intergenic	-693708.0	NM_001346640	108073.0	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	3.0	1.5	1.0	0.0	4.0	1.0
Merged-chr8-68884472-1	chr8	68883972	68884972	+	771.0	f0_c57.idr	intron (NM_008509, intron 1 of 9)	intron (NM_008509, intron 1 of 9)	3917.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	1.0	16.5	13.0	0.0	11.0	10.0
Merged-chr15-80814946-2	chr15	80814446	80815446	+	771.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177124, intron 1 of 21)	intron (NM_177124, intron 1 of 21)	16336.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0.5	0.5	0.5	0.0	0.0	0.0
Merged-chr5-56046658-2	chr5	56046158	56047158	+	771.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	1671261.0	NR_015588	319216.0	Mm.332387	NR_015588	ENSMUSG00000097216	4932441J04Rik	-	RIKEN cDNA 4932441J04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80943790-2	chr10	80943290	80944290	+	771.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13699.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65978205-2	chr3	65977705	65978705	+	771.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-19956.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-36009563-3	chr2	36009058	36010058	+	771.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29934.0	NM_029774	74410.0	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20652596-1	chr9	20652096	20653096	+	771.0	f0_balb.idr	intron (NM_023371, intron 1 of 3)	intron (NM_023371, intron 1 of 3)	466.0	NM_023371	23988.0	Mm.7906	NM_023371	ENSMUSG00000032171	Pin1	0610025L01Rik|D9Bwg1161e	protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11436336-1	chr2	11435836	11436836	+	771.0	f1_balb.idr	Intergenic	RLTR27|LTR|ERVK	-37836.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6568653-1	chr15	6568153	6569153	+	771.0	f0_c57.idr	Intergenic	Intergenic	-11194.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-84615231-3	chr7	84614727	84615727	+	771.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001360579, exon 7 of 7)	3' UTR (NM_001360579, exon 7 of 7)	-9285.0	NM_010176	14085.0	Mm.3798	NM_010176	ENSMUSG00000030630	Fah	swst	fumarylacetoacetate hydrolase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181244959-2	chr2	181244459	181245459	+	771.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2932.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30238537-2	chr2	30238037	30239037	+	771.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028299)	promoter-TSS (NR_028299)	768.0	NM_177725	241296.0	Mm.389232	NM_177725	ENSMUSG00000007476	Lrrc8a	Lrrc8|mKIAA1437	leucine rich repeat containing 8A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67256066-1	chr17	67255566	67256566	+	771.0	f1_balb.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	98393.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.5	12.5	1.5	2.0	10.5	2.5
Merged-chr2-43751796-2	chr2	43751296	43752296	+	771.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 1 of 14)	(TG)n|Simple_repeat|Simple_repeat	2972.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13755237-2	chr16	13754737	13755737	+	771.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357954, exon 1 of 1)	exon (NM_001357954, exon 1 of 1)	673.0	NM_001357954	432999.0	Mm.60430	NM_001357954		A930007A09Rik	-	RIKEN cDNA A930007A09 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35799168-2	chr17	35798668	35799668	+	771.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER44D|DNA|TcMar-Tigger	-22545.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165980264-1	chr2	165979764	165980764	+	771.0	f1_c57bl6.idr	Intergenic	Intergenic	-12373.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	9.5	7.0	6.0	3.0	18.5	2.0
Merged-chr11-113777969-3	chr11	113777468	113778468	+	771.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-26153.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111943639-2	chr13	111943139	111944139	+	771.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75703.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	1.5	0.0	1.5	3.0	2.5	2.5
Merged-chr11-70071027-2	chr11	70070527	70071527	+	771.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16672.0	NM_001291132	11889.0	Mm.6559	NM_009714	ENSMUSG00000020884	Asgr1	ASGPR1|Asgr|Asgr-1|HL-1	asialoglycoprotein receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-13036574-2	chr7	13036074	13037074	+	771.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001243968, exon 2 of 6)	exon (NM_001243968, exon 2 of 6)	1053.0	NM_001243968	22192.0	Mm.196580	NM_145578	ENSMUSG00000005575	Ube2m	2510040H03Rik|UBC12|Ubc-rs2	ubiquitin-conjugating enzyme E2M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-114500361-1	chr9	114499861	114500861	+	771.0	f1_balb.idr	Intergenic	Intergenic	-3817.0	NM_009916	12773.0	Mm.1337	NM_009916	ENSMUSG00000047898	Ccr4	C-C CKR-4|CHEMR1|Cmkbr4|LESTR|Sdf1r	chemokine (C-C motif) receptor 4	protein-coding	0.0	3.5	0.0	0.0	0.0	0.0
Merged-chr7-101359760-1	chr7	101359260	101360260	+	771.0	f1_balb.idr	intron (NM_001040111, intron 1 of 33)	ID4|SINE|ID	11691.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	2.0	9.0	5.0	3.5	19.0	6.0
Merged-chr5-92471724-2	chr5	92471224	92472224	+	771.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 2 of 11)	intron (NM_007644, intron 2 of 11)	13167.0	NR_105843	102466159.0		NR_105843	ENSMUSG00000099160	Mir6415	Gm27714|mmu-mir-6415	microRNA 6415	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20636334-2	chr11	20635834	20636834	+	771.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038625, intron 1 of 1)	intron (NM_001038625, intron 1 of 1)	4357.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0.5	0.0	0.5	0.5	0.0	0.5
Merged-chr10-80077303-2	chr10	80076803	80077803	+	771.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359635, intron 4 of 31)	intron (NM_001359635, intron 4 of 31)	-1864.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141393751-2	chr7	141393251	141394251	+	771.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011528, intron 1 of 7)	intron (NM_011528, intron 1 of 7)	1591.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-74150241-2	chr16	74149741	74150741	+	771.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358493, intron 2 of 28)	Lx2|LINE|L1	191826.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.0	0.0	1.0	1.5	0.0	0.0
Merged-chr8-47693344-3	chr8	47692844	47693844	+	771.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18185.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91191807-2	chr2	91191307	91192307	+	771.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001177730, exon 4 of 10)	exon (NM_001177730, exon 4 of 10)	3228.0	NM_013839	22259.0	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128497532-2	chr10	128497032	128498032	+	771.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172259, intron 1 of 6)	intron (NM_172259, intron 1 of 6)	1153.0	NM_172259	216459.0	Mm.291688	NM_172259	ENSMUSG00000039824	Myl6b	5730437E04Rik|BC037527|MLC1SA	myosin, light polypeptide 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-64599975-1	chr18	64599475	64600475	+	771.0	f0_balb.idr	intron (NM_001001488, intron 2 of 27)	intron (NM_001001488, intron 2 of 27)	61025.0	NM_001001488	54670.0	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	3.0	2.0	0.5	6.0	7.0	1.5
Merged-chr13-47042754-1	chr13	47042254	47043254	+	771.0	f1_balb.idr	promoter-TSS (NM_172262)	promoter-TSS (NM_172262)	463.0	NM_016785	22017.0	Mm.10169	NM_016785	ENSMUSG00000021376	Tpmt	AW106912	thiopurine methyltransferase	protein-coding	12.0	58.5	18.0	18.0	33.5	42.0
Merged-chr10-78458899-2	chr10	78458399	78459399	+	771.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172134, intron 1 of 10)	intron (NM_172134, intron 1 of 10)	6049.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83235580-1	chr8	83235080	83236080	+	771.0	f0_balb.idr	intron (NM_001111304, intron 5 of 20)	intron (NM_001111304, intron 5 of 20)	-54768.0	NM_009463	22227.0	Mm.4177	NM_009463	ENSMUSG00000031710	Ucp1	AI385626|Slc25a7|Ucp	uncoupling protein 1 (mitochondrial, proton carrier)	protein-coding	5.0	20.0	1.5	27.0	18.5	10.5
Merged-chr6-72397749-2	chr6	72397249	72398249	+	771.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-7082.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-63021654-3	chr10	63021151	63022151	+	771.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079824, intron 1 of 9)	intron (NM_001079824, intron 1 of 9)	-1351.0	NM_001359260	432467.0	Mm.274784	NM_001079824	ENSMUSG00000020069	Hnrnph3	AA693301|AI666703|Hnrph3	heterogeneous nuclear ribonucleoprotein H3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110704930-2	chr12	110704430	110705430	+	771.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8535.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84831249-2	chr2	84830749	84831749	+	771.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4228.0	NM_013899	30059.0	Mm.21826	NM_013899	ENSMUSG00000027076	Timm10	Tim13|Timm13a	translocase of inner mitochondrial membrane 10	protein-coding	5.5	3.5	0.0	0.0	0.0	2.5
Merged-chr18-70533118-1	chr18	70532618	70533618	+	771.0	f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-2797.0	NM_001289515	26447.0	Mm.244352	NM_011972	ENSMUSG00000038425	Poli	Rad30b	polymerase (DNA directed), iota	protein-coding	5.5	3.0	3.0	12.5	0.0	1.5
Merged-chr12-72389056-1	chr12	72388556	72389556	+	771.0	f0_c57.idr	intron (NM_153457, intron 1 of 8)	intron (NM_153457, intron 1 of 8)	19998.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-19967197-4	chr16	19966703	19967703	+	770.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183390, intron 1 of 6)	ORR1E|LTR|ERVL-MaLR	15846.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21237248-3	chr11	21236765	21237765	+	770.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1767.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	25.0	59.5	47.0	36.0	63.0	53.0
Merged-chr14-9556000-4	chr14	9555448	9556448	+	770.924988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 9 of 9)	intron (NM_001360141, intron 9 of 9)	-328147.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35063230-4	chr9	35062700	35063700	+	770.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	MYSERV6-int|LTR|ERVK	-53528.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	31.0	57.0	25.0	23.5	38.5	27.5
Merged-chr7-45447640-6	chr7	45447085	45448085	+	770.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030678, intron 10 of 15)	intron (NM_030678, intron 10 of 15)	12301.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142896463-4	chr5	142895841	142896841	+	770.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1103.0	NM_001033312	231863.0	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146405501-3	chr6	146404941	146405941	+	770.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 10 of 56)	intron (NM_019923, intron 10 of 56)	96782.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	0.0	8.5	1.0	4.0	17.0	1.0
Merged-chr15-83510424-3	chr15	83509926	83510926	+	770.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357953, intron 1 of 11)	intron (NM_001357953, intron 1 of 11)	481.0	NM_178869	319953.0	Mm.235007	NM_178869	ENSMUSG00000022442	Ttll1	6330444E16Rik|AV014541	tubulin tyrosine ligase-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-39320964-3	chr15	39320469	39321469	+	770.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053271, intron 4 of 26)	intron (NM_053271, intron 4 of 26)	122683.0	NM_053271	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124722207-2	chr6	124721707	124722707	+	770.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077705, intron 11 of 15)	intron (NM_001077705, intron 11 of 15)	-3817.0	NR_029792	723944.0		NR_029792	ENSMUSG00000065462	Mir200c	Mirn200c|mir-200c	microRNA 200c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-22006309-4	chr13	22005831	22006831	+	770.854126	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019429, intron 7 of 11)	intron (NM_019429, intron 7 of 11)	3410.0	NM_019429	54373.0	Mm.32043	NM_019429	ENSMUSG00000006179	Prss16	AI448615|TSSP	protease, serine 16 (thymus)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37299057-2	chr13	37298565	37299565	+	770.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	-46280.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	3.0	2.0	5.5	3.5	19.0	4.5
Merged-chr4-35132275-2	chr4	35131775	35132775	+	770.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	ORR1D1|LTR|ERVL-MaLR	-19780.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-51790921-2	chr17	51790421	51791421	+	770.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357637, intron 5 of 10)	intron (NM_001357637, intron 5 of 10)	21133.0	NM_001163630	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-57973674-2	chr1	57973174	57974174	+	770.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-3590.0	NM_001159865	51960.0	Mm.339711	NM_030211	ENSMUSG00000054770	Kctd18	4932411A20Rik|6530404F10Rik	potassium channel tetramerisation domain containing 18	protein-coding	0.0	0.0	0.5	0.5	0.0	0.5
Merged-chr15-98761876-2	chr15	98761376	98762376	+	770.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007478, intron 1 of 4)	intron (NM_007478, intron 1 of 4)	1116.0	NM_001355510	11842.0	Mm.221298	NM_007478	ENSMUSG00000051853	Arf3	5430400P17Rik|AI854770	ADP-ribosylation factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28524139-2	chr17	28523639	28524639	+	770.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6722.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100598089-2	chr5	100597589	100598589	+	770.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25884.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72218869-3	chr8	72218311	72219311	+	770.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026455)	promoter-TSS (NM_026455)	-919.0	NM_026455	67922.0	Mm.28327	NM_026455	ENSMUSG00000003039	Fam32a	2510049I19Rik|AW822030|OTAG-12|Otag12	family with sequence similarity 32, member A	protein-coding	2.5	9.5	5.0	8.5	25.5	21.0
Merged-chr11-114817097-2	chr11	114816597	114817597	+	770.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12|LTR|ERVK	18173.0	NM_181749	217302.0	Mm.269127	NM_181749	ENSMUSG00000034677	Gpr142	PGR2	G protein-coupled receptor 142	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50259823-3	chr11	50259325	50260325	+	770.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 4 of 4)	intron (NM_175334, intron 4 of 4)	-21293.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69792838-4	chr8	69792368	69793368	+	770.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133224, intron 1 of 25)	intron (NM_133224, intron 1 of 25)	1705.0	NM_133224	170759.0	Mm.186066	NM_133224	ENSMUSG00000031862	Atp13a1	Atp13a|Cgi152|catp	ATPase type 13A1	protein-coding	1.5	6.5	12.5	2.5	10.5	10.5
Merged-chr7-45491521-3	chr7	45490995	45491995	+	770.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290999, intron 1 of 9)	intron (NM_001290999, intron 1 of 9)	-2690.0	NM_027903	71755.0	Mm.34208	NM_027903	ENSMUSG00000011382	Dhdh	1300018L09Rik|AA591799|B830008H07Rik|Xld-1|Xld1	dihydrodiol dehydrogenase (dimeric)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136636894-6	chr1	136636367	136637367	+	770.8229980000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	11966.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17186399-4	chr10	17185946	17186946	+	770.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90664.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	3.0	3.5	0.5	5.0	10.0	0.0
Merged-chr6-48448617-3	chr6	48448097	48449097	+	770.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_173428, exon 2 of 103)	exon (NM_173428, exon 2 of 103)	368.0	NM_173428	243369.0	Mm.25039	NM_173428	ENSMUSG00000029797	Sspo	C79529|Scospondin	SCO-spondin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34005889-3	chr6	34005391	34006391	+	770.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23557.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50295362-3	chr6	50294859	50295859	+	770.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347213, exon 24 of 24)	3' UTR (NM_001347213, exon 24 of 24)	-33590.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-129307176-4	chr7	129306706	129307706	+	770.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080963, intron 1 of 6)	intron (NM_001080963, intron 1 of 6)	50112.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97484791-4	chr6	97484321	97485321	+	770.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	2999.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	143.5	344.5	203.0	96.5	165.5	125.0
Merged-chr4-150079823-2	chr4	150079344	150080344	+	770.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7659.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97101935-2	chr11	97101435	97102435	+	770.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_019507, intron 2 of 5)	intron (NM_019507, intron 2 of 5)	13396.0	NM_019507	57765.0	Mm.94519	NM_019507	ENSMUSG00000001444	Tbx21	TBT1|Tbet|Tblym	T-box 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108574078-2	chr6	108573586	108574586	+	770.75	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	49081.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	5.5	6.5	2.5	2.5	1.5	14.0
Merged-chr7-35395774-2	chr7	35395274	35396274	+	770.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_178643, intron 1 of 3)	B1_Mur4|SINE|Alu	993.0	NM_178643	101831.0	Mm.389855	NM_178643	ENSMUSG00000030493	Faap24	AW124591|AW538696|C230052I12Rik	Fanconi anemia core complex associated protein 24	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr9-24376797-4	chr9	24376296	24377296	+	770.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	126344.0	NM_001359948	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-98499951-4	chr6	98499458	98500458	+	770.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157204.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	2.0	10.0	12.0	2.0	8.5	14.5
Merged-chr11-93967467-2	chr11	93966967	93967967	+	770.6999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_008704, intron 1 of 4)	intron (NM_008704, intron 1 of 4)	1054.0	NM_008704	18102.0	Mm.439702	NM_008704	ENSMUSG00000037601	Nme1	AL024257|NDPK-A|NM23-M1|NM23A	NME/NM23 nucleoside diphosphate kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-59225592-3	chr3	59225084	59226084	+	770.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357010, intron 1 of 3)	intron (NM_001357010, intron 1 of 3)	-14702.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	16.5	18.0	15.0	3.0	17.0	19.0
Merged-chr12-55774494-4	chr12	55773968	55774968	+	770.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003719, intron 9 of 39)	Lx7|LINE|L1	47048.0	NM_019994	56784.0	Mm.292180	NM_019994	ENSMUSG00000021027	Ralgapa1	2310003F20Rik|4930400K19Rik|AI563624|GRIPE|Garnl1|Tulip1|mKIAA0884	Ral GTPase activating protein, alpha subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46643511-4	chr4	46643006	46644006	+	770.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198664, intron 2 of 12)	intron (NM_198664, intron 2 of 12)	6693.0	NM_198664	381605.0	Mm.331595	NM_198664	ENSMUSG00000039813	Tbc1d2	A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1	TBC1 domain family, member 2	protein-coding	4.5	7.0	1.5	9.0	0.0	1.0
Merged-chr16-13448466-3	chr16	13447954	13448954	+	770.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1069.0	NR_030549	100124432.0		NR_030549	ENSMUSG00000076972	Mir193b	Mir193|Mirn193b|mir-193b	microRNA 193b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-63913735-3	chr7	63913251	63914251	+	770.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-3106.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	139.0	192.0	131.5	54.0	100.0	89.0
Merged-chr15-101276809-2	chr15	101276309	101277309	+	770.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7492.0	NM_026566	68118.0	Mm.482360	NM_026566	ENSMUSG00000037204	Atg101	9430023L20Rik|AA407441|AU022967	autophagy related 101	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142747444-2	chr5	142746944	142747944	+	770.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122730, intron 16 of 27)	L1M5|LINE|L1	45343.0	NM_146257	243328.0	Mm.125942	NM_146257	ENSMUSG00000050822	Slc29a4	ENT4|mPMAT	solute carrier family 29 (nucleoside transporters), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122138844-2	chr7	122138344	122139344	+	770.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_021608, intron 4 of 5)	B4|SINE|B4	5803.0	NM_021608	59288.0	Mm.478285	NM_021608	ENSMUSG00000030868	Dctn5	4930427E12Rik|C78178|b2b315Clo	dynactin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39456477-3	chr10	39455988	39456988	+	770.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122893, intron 3 of 13)	intron (NM_001122893, intron 3 of 13)	86689.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70502357-2	chr8	70501857	70502857	+	770.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_018827, intron 6 of 8)	intron (NM_018827, intron 6 of 8)	4069.0	NR_151646	66462.0	Mm.28242	NM_025577	ENSMUSG00000058833	Rex1bd	2810428I15Rik	required for excision 1-B domain containing	protein-coding	1.0	4.0	3.5	0.0	1.0	0.0
Merged-chr2-58907361-4	chr2	58906883	58907883	+	770.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 10 of 13)	intron (NM_001362394, intron 10 of 13)	152199.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58282726-4	chr11	58282227	58283227	+	770.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24342.0	NM_182996	103836.0	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	3.5	3.0	2.0	15.5	1.0	4.0
Merged-chr5-102571636-4	chr5	102571160	102572160	+	770.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029270, intron 2 of 9)	intron (NM_029270, intron 2 of 9)	90269.0	NM_029270	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-56232166-2	chr8	56231666	56232666	+	770.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62386.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	19.5	17.5	3.5	15.0	15.0	2.5
Merged-chr4-130814014-2	chr4	130813514	130814514	+	770.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	C-rich|Low_complexity|Low_complexity	21477.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-10170116-3	chr8	10169612	10170612	+	770.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001319151, intron 1 of 34)	intron (NM_001319151, intron 1 of 34)	16201.0	NM_001319151	244281.0	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84203807-3	chr1	84203319	84204319	+	770.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003948, intron 1 of 2)	intron (NM_001003948, intron 1 of 2)	15142.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110258490-3	chr7	110258013	110259013	+	770.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009302, intron 3 of 11)	PB1D10|SINE|Alu	36810.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25412236-6	chr14	25411669	25412669	+	770.527771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47016.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4303148-2	chr19	4302648	4303648	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	3074.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	1.0	7.0	4.5	0.5	6.5	6.0
Merged-chr13-24810312-2	chr13	24809812	24810812	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024473, intron 4 of 4)	intron (NM_024473, intron 4 of 4)	8655.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34011654-2	chr11	34011154	34012154	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-18461.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114361905-2	chr6	114361405	114362405	+	770.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAGGA)n|Simple_repeat|Simple_repeat	-36031.0	NM_001317125	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83582089-2	chr6	83581589	83582589	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_078345, intron 5 of 7)	B4|SINE|B4	-9585.0	NM_001362080	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107241672-2	chr4	107241172	107242172	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029985, intron 3 of 7)	B2_Mm2|SINE|B2	11861.0	NM_029985	77809.0	Mm.29681	NM_029985	ENSMUSG00000028617	Lrrc42	A930011F22Rik|AA536996	leucine rich repeat containing 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-175688125-2	chr1	175687625	175688625	+	770.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_021350, exon 1 of 1)	exon (NM_021350, exon 1 of 1)	228.0	NM_021350	12663.0	Mm.440490	NM_021350	ENSMUSG00000078185	Chml	AI450814|E030003F13Rik|REP-2|Rep2	choroideremia-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62496292-2	chr4	62495792	62496792	+	770.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_138653, exon 6 of 7)	exon (NM_138653, exon 6 of 7)	5908.0	NM_024257	72748.0	Mm.41506	NM_024257	ENSMUSG00000038422	Hdhd3	2810435D12Rik	haloacid dehalogenase-like hydrolase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94355084-2	chr11	94354584	94355584	+	770.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029600, exon 26 of 31)	exon (NM_029600, exon 26 of 31)	27083.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100444883-2	chr12	100444383	100445383	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 5 of 19)	intron (NM_001033213, intron 5 of 19)	75939.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30722137-2	chr2	30721637	30722637	+	770.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_037272)	TTS (NR_037272)	927.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27790817-2	chr17	27790317	27791317	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033279, intron 2 of 4)	intron (NM_001033279, intron 2 of 4)	29725.0	NM_001033279	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	8.0	18.0	14.0	6.5	15.5	12.5
Merged-chr4-58898507-2	chr4	58898007	58899007	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172381, intron 1 of 48)	intron (NM_172381, intron 1 of 48)	13423.0	NM_001355697	230249.0	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|Ecpas|mKIAA0368	expressed sequence AI314180	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-112451758-3	chr1	112451257	112452257	+	770.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-586839.0	NM_001081316	319901.0	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108559209-2	chr9	108558709	108559709	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175143, intron 9 of 9)	intron (NM_175143, intron 9 of 9)	-1292.0	NM_011830	23918.0	Mm.6065	NM_011830	ENSMUSG00000062867	Impdh2	IMPD	inosine monophosphate dehydrogenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39926863-2	chr10	39926363	39927363	+	770.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163503)	promoter-TSS (NM_001163503)	60.0	NM_001163503	72045.0	Mm.235981	NM_001163503	ENSMUSG00000039339	Mfsd4b2	2010001E11Rik|Naglt1b	major facilitator superfamily domain containing 4B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-28940590-2	chr19	28940090	28941090	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198651, intron 8 of 12)	intron (NM_198651, intron 8 of 12)	-23330.0	NM_028922	74411.0	Mm.441887	NM_028922	ENSMUSG00000040105	Plpp6	4932443D16Rik|Ppapdc2	phospholipid phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32645227-2	chr11	32644623	32645623	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271349, intron 1 of 11)	L1_Mus1|LINE|L1	2568.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	4.5	26.0	5.5	0.0	4.5	9.5
Merged-chr6-113748900-2	chr6	113748400	113749400	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001036684, intron 19 of 19)	intron (NM_001036684, intron 19 of 19)	-8219.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35128905-2	chr17	35128464	35129464	+	770.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_018816)	TTS (NM_018816)	2562.0	NM_033477	114585.0	Mm.42070	NM_033477	ENSMUSG00000043311	D17H6S53E	G4|NG34	DNA segment, Chr 17, human D6S53E	protein-coding	8.0	1.5	0.5	6.5	4.0	2.5
Merged-chr14-103187288-2	chr14	103186788	103187788	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207215, intron 49 of 84)	Lx8b|LINE|L1	-87722.0	NM_001360342	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136881156-2	chr4	136880656	136881656	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009777, intron 2 of 2)	intron (NM_009777, intron 2 of 2)	5021.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	20.0	29.5	30.0	7.0	53.5	33.5
Merged-chr14-67097127-1	chr14	67096627	67097627	+	770.5	f0_balb.idr	Intergenic	Intergenic	-24656.0	NM_001205188	71978.0	Mm.273997	NM_028032	ENSMUSG00000022052	Ppp2r2a	2410004D02Rik|mKIAA1541	protein phosphatase 2, regulatory subunit B, alpha	protein-coding	0.0	1.0	0.0	2.0	0.0	1.5
Merged-chr13-109229929-2	chr13	109229429	109230429	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-94815.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10222344-2	chr19	10221844	10222844	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033481, intron 7 of 25)	intron (NM_001033481, intron 7 of 25)	16311.0	NM_001163431	69038.0	Mm.375100	NM_026919	ENSMUSG00000036372	Tmem258	1810006K21Rik	transmembrane protein 258	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94264439-2	chr16	94263939	94264939	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 4 of 10)	intron (NM_001360045, intron 4 of 10)	25852.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36574867-2	chr1	36574367	36575367	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-16486.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34128357-2	chr17	34127960	34128960	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360530, intron 1 of 5)	B3|SINE|B2	2942.0	NM_001360530	14998.0	Mm.16373	NM_010386	ENSMUSG00000037649	H2-DMa	H-2Ma|H2-Ma	histocompatibility 2, class II, locus DMa	protein-coding	3.0	4.5	2.5	7.0	19.0	5.0
Merged-chr5-99269916-2	chr5	99269411	99270411	+	770.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16984.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	17.0	55.5	44.5	63.0	95.0	68.0
Merged-chr9-20995324-2	chr9	20994824	20995824	+	770.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-7413.0	NM_023167	66163.0	Mm.427576	NM_023167	ENSMUSG00000003299	Mrpl4	1110017G11Rik	mitochondrial ribosomal protein L4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-43508306-2	chr18	43507806	43508806	+	770.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70020.0	NM_001291455	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152400772-2	chr3	152400272	152401272	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001287139, intron 1 of 13)	intron (NM_001287139, intron 1 of 13)	4088.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19754282-2	chr7	19753782	19754782	+	770.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4709.0	NM_001159724	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113072860-2	chr12	113072360	113073360	+	770.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291444, exon 24 of 24)	3' UTR (NM_001291444, exon 24 of 24)	-1642.0	NM_001361919	75671.0	Mm.23377	NM_029381	ENSMUSG00000012211	Tex22	1700028O09Rik|AV210422|Tep22	testis expressed gene 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5805290-2	chr18	5804747	5805747	+	770.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	212600.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	5.5	6.5	2.5	0.0	22.0	4.0
Merged-chr6-128847244-2	chr6	128846744	128847744	+	770.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001254946)	TTS (NM_001254946)	-20929.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-148687939-2	chr6	148687439	148688439	+	770.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9939.0	NR_131024	75831.0	Mm.159595	NR_131024	ENSMUSG00000084909	4930528G23Rik	-	RIKEN cDNA 4930528G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-51789495-4	chr1	51788990	51789990	+	770.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010863, intron 13 of 29)	intron (NM_010863, intron 13 of 29)	126488.0	NM_001161817	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	0.0	0.0	0.0	1.0	0.0	0.5
Merged-chr8-60631714-1	chr8	60631214	60632214	+	770.5	f0_balb.idr	Intergenic	Intergenic	-1111.0	NM_027756	71306.0	Mm.23242	NM_027756	ENSMUSG00000031647	Mfap3l	4933428A15Rik|5430405D20Rik|AI461995|AW125052|NYD-sp9|mKIAA0626	microfibrillar-associated protein 3-like	protein-coding	0.0	0.0	0.0	0.0	1.5	0.0
Merged-chr5-3474135-1	chr5	3473635	3474635	+	770.5	f0_balb.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-69698.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-83766405-2	chr3	83765905	83766905	+	770.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009144)	promoter-TSS (NM_009144)	84.0	NM_009144	20319.0	Mm.19155	NM_009144	ENSMUSG00000027996	Sfrp2	AI851596|Sdf5	secreted frizzled-related protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-125441307-2	chr1	125440807	125441807	+	770.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5580.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-78859025-4	chr12	78858508	78859508	+	770.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023721, intron 1 of 8)	(A)n|Simple_repeat|Simple_repeat	2630.0	NM_023721	73834.0	Mm.311549	NM_023721	ENSMUSG00000021114	Atp6v1d	1110004P10Rik|Atp6m|VATD|Vma8	ATPase, H+ transporting, lysosomal V1 subunit D	protein-coding	23.5	125.5	77.0	52.5	81.0	90.5
Merged-chr15-77538111-4	chr15	77537609	77538609	+	770.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14-int|LTR|ERV1	-4794.0	NM_175391	108956.0	Mm.86391	NM_175391	ENSMUSG00000044309	Apol7c	2210421G13Rik	apolipoprotein L 7c	protein-coding	33.5	74.0	59.0	11.5	21.0	12.5
Merged-chr5-24470746-4	chr5	24470231	24471231	+	770.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359881, intron 1 of 15)	intron (NM_001359881, intron 1 of 15)	18554.0	NM_139153	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55039123-4	chr14	55038629	55039629	+	770.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073535, intron 1 of 1)	intron (NR_073535, intron 1 of 1)	667.0	NR_073535	100151693.0	Mm.378403	NR_073535	ENSMUSG00000072492	Gm10364	EG545052	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	11.5	12.0	6.5	5.0	5.0	1.0
Merged-chr9-103272192-3	chr9	103271694	103272694	+	770.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027918, intron 7 of 16)	intron (NM_027918, intron 7 of 16)	16103.0	NM_027918	71775.0	Mm.18802	NM_027918	ENSMUSG00000033688	1300017J02Rik	Ica|mICA	RIKEN cDNA 1300017J02 gene	protein-coding	2.5	0.5	0.5	2.5	0.5	0.5
Merged-chr12-3657383-2	chr12	3656883	3657883	+	770.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 8 of 17)	intron (NM_001162465, intron 8 of 17)	84399.0	NM_007886	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17461909-2	chr16	17461409	17462409	+	770.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277231, intron 1 of 1)	ORR1D2|LTR|ERVL-MaLR	9924.0	NM_007764	12929.0	Mm.21048	NM_007764	ENSMUSG00000006134	Crkl	1110025F07Rik|AA589403|AI325100|Crkol	v-crk avian sarcoma virus CT10 oncogene homolog-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-114908261-3	chr4	114907746	114908746	+	770.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008593, exon 1 of 1)	exon (NM_008593, exon 1 of 1)	652.0	NM_008593	17301.0	Mm.7997	NM_008593	ENSMUSG00000055210	Foxd2	AI426778|Mf2	forkhead box D2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-23783146-3	chr5	23782623	23783623	+	770.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178403, intron 1 of 15)	intron (NM_178403, intron 1 of 15)	588.0	NM_001289780	78697.0	Mm.58660	NM_178403	ENSMUSG00000057541	Pus7	C330017I15Rik	pseudouridylate synthase 7	protein-coding	4.0	39.0	15.5	10.0	9.0	11.0
Merged-chr5-25023149-3	chr5	25022663	25023663	+	770.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 2 of 15)	intron (NM_145401, intron 2 of 15)	-27410.0	NM_001310480	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25857239-4	chr14	25856646	25857646	+	770.3184809999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013469, intron 1 of 14)	intron (NM_013469, intron 1 of 14)	14991.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	12.5	23.0	13.5	26.5	44.0	11.0
Merged-chr15-85671113-4	chr15	85670615	85671615	+	770.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-32658.0	NR_110483	102800312.0	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	7.0	4.5	5.0	5.5	11.5	4.0
Merged-chr11-88087091-4	chr11	88086607	88087607	+	770.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10951.0	NR_045499	70393.0	Mm.386799	NR_045499	ENSMUSG00000018378	2210416O15Rik	-	RIKEN cDNA 2210416O15 gene	ncRNA	0.0	0.0	0.0	2.0	0.0	3.0
Merged-chr1-89943408-4	chr1	89942904	89943904	+	770.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12228.0	NM_010262	14472.0	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-61594964-4	chr2	61594476	61595476	+	770.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149323, intron 2 of 9)	MTD|LTR|ERVL-MaLR	1879.0	NR_149323	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-45172077-2	chr12	45171577	45172577	+	770.283325	f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR3|LTR|Gypsy	-97594.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98777629-3	chr12	98777139	98778139	+	770.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008506, intron 10 of 14)	L2|LINE|L2	6617.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34578244-3	chr17	34577747	34578747	+	770.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010929, intron 18 of 29)	intron (NM_010929, intron 18 of 29)	-11559.0	NM_134116	106512.0	Mm.26584	NM_134116	ENSMUSG00000034786	Gpsm3	AA960287|AGS4	G-protein signalling modulator 3 (AGS3-like, C. elegans)	protein-coding	1.0	1.0	0.0	1.0	4.0	0.5
Merged-chr4-11704351-3	chr4	11703852	11704852	+	770.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010276)	promoter-TSS (NM_010276)	-95.0	NM_010276	14579.0	Mm.247486	NM_010276	ENSMUSG00000028214	Gem	AV020497	GTP binding protein (gene overexpressed in skeletal muscle)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61536565-4	chr10	61536064	61537064	+	770.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153542, intron 3 of 4)	intron (NM_153542, intron 3 of 4)	-58920.0	NM_001177511	237362.0	Mm.131297	NM_001177511	ENSMUSG00000020090	Npffr1	Gm236|Gpr147|NPFF1|NPFF1R|OT7T022	neuropeptide FF receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11554031-2	chr8	11553506	11554506	+	770.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1756.0	NM_001302458	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96100440-2	chr3	96099940	96100940	+	770.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4087.0	NM_001025613	229603.0	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-42829719-4	chr13	42829215	42830215	+	770.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005740, intron 1 of 12)	intron (NM_001005740, intron 1 of 12)	-36532.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118640129-3	chr9	118639635	118640635	+	770.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	33426.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	5.5	13.5	4.0	4.0	13.5	4.0
Merged-chr11-69673110-2	chr11	69672610	69673610	+	770.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144958)	promoter-TSS (NM_144958)	-687.0	NM_001159375	13681.0	Mm.26680	NM_144958	ENSMUSG00000059796	Eif4a1	BM-010|Ddx2a|Eif4	eukaryotic translation initiation factor 4A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25209597-2	chr7	25209098	25210098	+	770.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_207677, intron 4 of 4)	intron (NM_207677, intron 4 of 4)	8127.0	NR_106015	102466794.0		NR_106015	ENSMUSG00000098325	Mir7048	Gm27274|mmu-mir-7048	microRNA 7048	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-151086566-4	chr5	151086055	151087055	+	770.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153382, intron 3 of 13)	intron (NR_153382, intron 3 of 13)	103638.0	NM_001163493	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167650340-3	chr2	167649862	167650862	+	770.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145538, intron 2 of 5)	intron (NM_145538, intron 2 of 5)	11182.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-83219965-2	chr10	83219465	83220465	+	770.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117852.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116128574-2	chr3	116128074	116129074	+	770.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_011693, exon 2 of 9)	exon (NM_011693, exon 2 of 9)	1114.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	63.5	130.0	102.0	23.0	130.0	95.0
Merged-chr4-136207545-2	chr4	136207045	136208045	+	770.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008232, intron 1 of 24)	intron (NM_001008232, intron 1 of 24)	1180.0	NM_001355698	230837.0	Mm.77788	NM_001008232	ENSMUSG00000036995	Asap3	9430088F20Rik|Ddefl1|Gm140|UPLC1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4595444-2	chr11	4594944	4595944	+	770.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028860)	promoter-TSS (NM_028860)	-629.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120471332-4	chr8	120470807	120471807	+	770.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17559.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137062021-3	chr5	137061520	137062520	+	770.133301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008871, exon 9 of 9)	3' UTR (NM_008871, exon 9 of 9)	10252.0	NM_008871	18787.0	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98788568-2	chr7	98788068	98789068	+	770.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46544.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52905271-3	chr2	52904780	52905780	+	770.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	MLT1A|LTR|ERVL-MaLR	47412.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6632852-2	chr15	6632352	6633352	+	770.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011815, intron 5 of 17)	intron (NM_011815, intron 5 of 17)	21451.0	NR_155272	102632231.0	Mm.444780	NR_155272		LOC102632231	-	uncharacterized LOC102632231	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68854015-3	chr11	68853594	68854594	+	770.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023668)	promoter-TSS (NM_023668)	-963.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-105572950-4	chr10	105572454	105573454	+	770.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177368, intron 1 of 11)	intron (NM_177368, intron 1 of 11)	1525.0	NM_177368	278279.0	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	0.0	3.0	5.0	0.0	0.0	0.0
Merged-chr1-131967439-3	chr1	131966935	131967935	+	770.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177628, intron 1 of 4)	intron (NM_001177628, intron 1 of 4)	-3174.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0.0	6.0	0.5	0.0	1.0	3.5
Merged-chr17-47869572-2	chr17	47869073	47870073	+	770.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028767, intron 15 of 16)	intron (NM_028767, intron 15 of 16)	-34882.0	NM_001109973	17240.0	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	0.0	6.0	0.5	18.0	0.0	0.0
Merged-chr2-155342915-2	chr2	155342415	155343415	+	770.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004721, intron 2 of 11)	ID_B1|SINE|B4	-13902.0	NR_030475	735287.0		NR_030475	ENSMUSG00000076216	Mir695	Mirn695|mmu-mir-695	microRNA 695	ncRNA	16.0	8.5	8.5	0.0	5.5	10.5
Merged-chr16-4625456-2	chr16	4624956	4625956	+	770.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025571)	promoter-TSS (NM_025571)	-510.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83508377-2	chr6	83507877	83508877	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1408.0	NM_001162521	27369.0	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9237888-2	chr4	9237388	9238388	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31405.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125650313-2	chr8	125649813	125650813	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-19505.0	NM_028908	74393.0	Mm.41709	NM_028908	ENSMUSG00000050930	Map10	4933403G14Rik|AI835009|mKIAA1383	microtubule-associated protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-10979254-1	chr2	10978754	10979754	+	770.0	f0_balb.idr	Intergenic	Intergenic	-193128.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86820958-2	chr6	86820458	86821458	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27374.0	NM_013471	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136664731-2	chr5	136664231	136665231	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28415.0	NM_001303019	59310.0	Mm.5178	NM_021611	ENSMUSG00000005474	Myl10	1700027I08Rik|Mylc2pl|PLRLC	myosin, light chain 10, regulatory	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-69455660-2	chr9	69455160	69456160	+	770.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007585, intron 1 of 12)	intron (NM_007585, intron 1 of 12)	-1284.0	NR_037296	100526560.0		NR_037296	ENSMUSG00000093042	Mir3109	mir-3109|mmu-mir-3109	microRNA 3109	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165994647-1	chr2	165994147	165995147	+	770.0	f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	2010.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	3.0	10.5	3.0	0.0	8.5	3.5
Merged-chr8-122265194-2	chr8	122264694	122265694	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16947.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	0.0	0.0	0.0	4.0	1.5	1.0
Merged-chr10-29861331-2	chr10	29860831	29861831	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-325464.0	NM_028351	72780.0	Mm.45191	NM_028351	ENSMUSG00000019880	Rspo3	2810459H04Rik|AW742308|Cristin1|Thsd2	R-spondin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80183536-2	chr10	80183036	80184036	+	770.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007909, intron 1 of 3)	intron (NM_007909, intron 1 of 3)	4054.0	NM_007909	13637.0	Mm.1478	NM_007909	ENSMUSG00000003070	Efna2	CEK7L|Elf1|Epl6|Eplg6|Lerk6	ephrin A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97270494-1	chr7	97269994	97270994	+	770.0	f0_balb.idr	intron (NM_001162477, intron 2 of 9)	intron (NM_001162477, intron 2 of 9)	55470.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71290596-2	chr8	71290096	71291096	+	770.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001142323, exon 2 of 39)	exon (NM_001142323, exon 2 of 39)	17882.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	10.0	32.5	12.5	1.0	16.5	8.0
Merged-chr12-26414802-2	chr12	26414334	26415334	+	770.0	f0_c57.idr|f1_c57bl6.idr	TTS (NR_105856)	TTS (NR_105856)	176.0	NR_105856	102466676.0		NR_105856	ENSMUSG00000098771	Mir6538	Gm27439|mmu-mir-6538	microRNA 6538	ncRNA	2.0	12.5	6.0	1.0	0.0	3.0
Merged-chr10-99412380-2	chr10	99411880	99412880	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	149149.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122740102-2	chr5	122739602	122740602	+	770.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199676, intron 14 of 16)	intron (NM_001199676, intron 14 of 16)	32558.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-127324975-2	chr4	127324475	127325475	+	770.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008126)	TTS (NM_008126)	4150.0	NM_008126	14620.0	Mm.90003	NM_008126	ENSMUSG00000042367	Gjb3	Cnx31|Cx31|D4Wsu144e|Gjb-3	gap junction protein, beta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-67647085-3	chr16	67646561	67647561	+	770.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-26153.0	NM_178721	239857.0	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80742974-2	chr10	80742474	80743474	+	770.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007460)	promoter-TSS (NM_007460)	-699.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119809467-2	chr4	119808967	119809967	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-5211.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75315165-2	chr10	75314665	75315665	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1712.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-62571897-1	chr7	62571397	62572397	+	770.0	f0_balb.idr	Intergenic	IAPLTR3-int|LTR|ERVK	-107387.0	NM_013788	27412.0	Mm.422745	NM_013788	ENSMUSG00000070526	Peg12	Frat3	paternally expressed 12	protein-coding	1.0	0.0	0.0	2.0	1.5	0.5
Merged-chr1-40115478-2	chr1	40114978	40115978	+	770.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010555, intron 5 of 8)	intron (NM_010555, intron 5 of 8)	29385.0	NM_001360800	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75110349-2	chr8	75109849	75110849	+	770.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008566, exon 4 of 17)	exon (NM_008566, exon 4 of 17)	840.0	NM_008566	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105716011-1	chr4	105715511	105716511	+	770.0	f0_balb.idr	Intergenic	L2a|LINE|L2	-525202.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104345213-2	chr8	104344713	104345713	+	770.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024217, intron 3 of 4)	intron (NM_024217, intron 3 of 4)	4619.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4137499-2	chr11	4136999	4137999	+	770.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027859, intron 5 of 8)	intron (NM_027859, intron 5 of 8)	-1865.0	NR_037220	100526466.0		NR_037220	ENSMUSG00000093080	Mir3060	mir-3060|mmu-mir-3060	microRNA 3060	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160616827-2	chr2	160616327	160617327	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-29070.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-84590052-2	chr6	84589552	84590552	+	770.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175475, intron 1 of 6)	intron (NM_175475, intron 1 of 6)	3758.0	NM_175475	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-14387630-1	chr16	14387130	14388130	+	770.0	f0_balb.idr	intron (NM_008576, intron 1 of 30)	B1_Mus2|SINE|Alu	26072.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	0.0	8.5	2.5	3.5	10.5	3.0
Merged-chr15-86224302-2	chr15	86223802	86224802	+	770.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 1 of 12)	intron (NM_145476, intron 1 of 12)	9843.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133625792-2	chr4	133625317	133626317	+	770.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001017968, intron 2 of 7)	intron (NM_001017968, intron 2 of 7)	7612.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	11.0	2.5	5.5	8.5	15.0	13.0
Merged-chr14-30942423-2	chr14	30941923	30942923	+	770.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008406, intron 3 of 21)	intron (NM_008406, intron 3 of 21)	866.0	NM_008406	16424.0	Mm.3227	NM_008406	ENSMUSG00000006529	Itih1	ITI-HC1|Intin1|Itih-1	inter-alpha trypsin inhibitor, heavy chain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45084584-2	chr19	45084084	45085084	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8497.0	NM_001362397	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96707798-2	chr3	96707298	96708298	+	770.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_030094, exon 3 of 8)	exon (NM_030094, exon 3 of 8)	762.0	NM_001162925	78373.0	Mm.423186	NM_030094	ENSMUSG00000028100	Nudt17	2410015C20Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-4350883-1	chr13	4350383	4351383	+	770.0	f1_c57bl6.idr	Intergenic	RLTR9E|LTR|ERVK	-71484.0	NM_013777	622402.0	Mm.27447	NM_013777	ENSMUSG00000021211	Akr1c12	AI266976|Akra	aldo-keto reductase family 1, member C12	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr2-144007688-2	chr2	144007188	144008188	+	770.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	3575.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80182622-2	chr7	80182122	80183122	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4219.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147751841-4	chr5	147751331	147752331	+	770.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-25843.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181290483-2	chr2	181289983	181290983	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-2517.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-53980096-2	chr17	53979598	53980598	+	770.0	f0_balb.idr|f1_balb.idr	intron (NM_018751, intron 1 of 7)	L1_Mur3|LINE|L1	10533.0	NM_018751	20888.0	Mm.10108	NM_018751	ENSMUSG00000023943	Sult1c1	(PST)G|P-SULT|ST1C1|Stp2|Sult1a2|mOLFST	sulfotransferase family, cytosolic, 1C, member 1	protein-coding	0.0	1.5	0.0	2.0	2.0	5.5
Merged-chr9-118693916-2	chr9	118693416	118694416	+	770.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 14 of 27)	intron (NM_133721, intron 14 of 27)	-17776.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.5	0.0	0.0	1.5	0.5	0.0
Merged-chr12-16994688-2	chr12	16994188	16995188	+	770.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172574, intron 4 of 6)	intron (NM_172574, intron 4 of 6)	5430.0	NM_172574	217430.0	Mm.379451	NM_172574	ENSMUSG00000045679	Pqlc3	C78076|E030024M05Rik	PQ loop repeat containing	protein-coding	0.0	5.5	0.0	0.0	0.0	0.5
Merged-chr19-41997961-1	chr19	41997461	41998461	+	770.0	f0_balb.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	16198.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	4.5	4.0	3.0	6.5	2.0	6.5
Merged-chr16-50477803-2	chr16	50477303	50478303	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45337.0	NM_001347240	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23801777-1	chr17	23801277	23802277	+	770.0	f1_balb.idr	Intergenic	B3A|SINE|B2	-1410.0	NM_175229	75956.0	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	5.0	19.5	14.0	4.5	9.0	1.0
Merged-chr10-67124396-3	chr10	67123897	67124897	+	770.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2861.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-65189128-3	chr1	65188609	65189609	+	770.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310624, intron 1 of 41)	T-rich|Low_complexity|Low_complexity	2424.0	NM_011086	18711.0	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE type zinc finger containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124479688-2	chr6	124479188	124480188	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13425.0	NM_181344	232371.0	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75664485-2	chr10	75663985	75664985	+	770.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172549, intron 29 of 36)	intron (NM_172549, intron 29 of 36)	-20477.0	NM_027890	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67493720-2	chr10	67493220	67494220	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44149.0	NM_010118	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-59499379-1	chr16	59498879	59499879	+	770.0	f0_balb.idr	intron (NM_174848, intron 16 of 18)	intron (NM_174848, intron 16 of 18)	27604.0	NM_025910	67014.0	Mm.289150	NM_025910	ENSMUSG00000022724	Riox2	1810047J07Rik|2410057H13Rik|3830408E23Rik|AI449204|Mina	ribosomal oxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143072588-2	chr7	143072088	143073088	+	770.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020277, intron 24 of 24)	intron (NM_020277, intron 24 of 24)	3220.0	NM_001115085	56844.0	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101996242-1	chr5	101995742	101996742	+	770.0	f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	73679.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	5.5	5.5	6.0	4.5	5.5	0.0
Merged-chr10-127640240-2	chr10	127639740	127640740	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2746.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	2.0	0.0	0.0	9.0	0.0	0.0
Merged-chr15-93216424-2	chr15	93215924	93216924	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58755.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111536495-2	chr12	111535995	111536995	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-1606.0	NM_178041	217869.0	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-60599069-1	chr1	60598569	60599569	+	770.0	f0_balb.idr	Intergenic	Intergenic	-32304.0	NM_001045513	77300.0	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	3.5	0.0	4.0	0.0	0.0	2.5
Merged-chr7-104410981-2	chr7	104410481	104411481	+	770.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009099, exon 8 of 8)	3' UTR (NM_009099, exon 8 of 8)	35144.0	NM_001357467	20128.0	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	0.0	0.0	4.5	0.0	2.0	2.0
Merged-chr12-80327184-6	chr12	80326646	80327646	+	769.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	64531.0	NR_037207	100526530.0		NR_037207	ENSMUSG00000105972	Mir1843a	Mir1843|mir-1843a|mmu-mir-1843|mmu-mir-1843a	microRNA 1843a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83704970-4	chr11	83704476	83705476	+	769.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081957, intron 2 of 2)	ORR1D1|LTR|ERVL-MaLR	920.0	NM_001081957	100034251.0	Mm.24097	NM_001081957	ENSMUSG00000069792	Wfdc17	Amwap|Gm11428	WAP four-disulfide core domain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-93556189-4	chr3	93555661	93556661	+	769.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009112, intron 1 of 2)	intron (NM_009112, intron 1 of 2)	1044.0	NM_009112	20194.0	Mm.1	NM_009112	ENSMUSG00000041959	S100a10	42C|AA409961|AL024248|CAL12|CLP11|Cal1l|p10|p11	S100 calcium binding protein A10 (calpactin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12567170-4	chr19	12566676	12567676	+	769.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6334.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	15.5	39.0	20.0	5.5	15.0	28.5
Merged-chr12-34591908-4	chr12	34591412	34592412	+	769.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	RCHARR1|DNA|hAT-Charlie	-63023.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	2.0	2.5	5.0	0.0	18.5	3.5
Merged-chr2-118543448-2	chr2	118542948	118543948	+	769.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331221, intron 3 of 3)	intron (NM_001331221, intron 3 of 3)	1139.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	1.5	0.0	0.5	1.0	0.0	0.5
Merged-chr1-86215436-4	chr1	86214932	86215932	+	769.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027456, intron 19 of 20)	MTD|LTR|ERVL-MaLR	60652.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-55947966-2	chr17	55947466	55948466	+	769.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310337, intron 1 of 3)	intron (NM_001310337, intron 1 of 3)	1534.0	NM_001310337	240120.0	Mm.441018	NM_146249	ENSMUSG00000062101	Zfp119b	-	zinc finger protein 119b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95181776-2	chr10	95181276	95182276	+	769.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	-35951.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46016299-2	chr11	46015799	46016799	+	769.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_173384, intron 4 of 4)	intron (NM_173384, intron 4 of 4)	35989.0	NM_173384	214105.0	Mm.66708	NM_173384	ENSMUSG00000040489	Sox30	-	SRY (sex determining region Y)-box 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-13415122-2	chr13	13414628	13415628	+	769.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-21504.0	NM_031999	83924.0	Mm.379269	NM_031999	ENSMUSG00000021306	Gpr137b	AI788917|AU016435|AW546472|C730041E01|C80550|C80741|D13Abb1e|Tm7sf1	G protein-coupled receptor 137B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-78302023-4	chr16	78301525	78302525	+	769.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025192, intron 1 of 6)	CpG	354.0	NM_001276263	13052.0	Mm.66222	NM_009988	ENSMUSG00000022865	Cxadr	2610206D03Rik|AU016810|AW553441|CAR|MCAR|MCVADR	coxsackie virus and adenovirus receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97833425-3	chr15	97832935	97833935	+	769.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	-1668.0	NM_001204276	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52488442-2	chr6	52487942	52488942	+	769.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4009.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-4580710-3	chr15	4580203	4581203	+	769.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-146507.0	NM_016704	12274.0	Mm.20247	NM_016704	ENSMUSG00000022181	C6	AW111623	complement component 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3800893-2	chr4	3800393	3801393	+	769.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	34762.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	2.5	0.0	2.0	2.5	0.0	2.0
Merged-chr3-9914750-3	chr3	9914241	9915241	+	769.827759	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81062.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	2.0	3.0	2.0	0.0	0.0	0.0
Merged-chr5-3968578-3	chr5	3968078	3969078	+	769.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194462, intron 7 of 47)	intron (NM_194462, intron 7 of 47)	40392.0	NM_194462	100986.0	Mm.46044	NM_194462	ENSMUSG00000040407	Akap9	5730481H23Rik|AKAP-9|AKAP450|AW545847|C79026|G1-448-15|PRKA9|mKIAA0803|mei2-5|repro12	A kinase (PRKA) anchor protein (yotiao) 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152734456-2	chr2	152733959	152734959	+	769.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1792.0	NM_010495	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	4.5	3.5	5.0	2.0	3.5	0.5
Merged-chr8-10819278-3	chr8	10818777	10819777	+	769.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63177.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90491024-3	chr2	90490594	90491594	+	769.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	(A)n|Simple_repeat|Simple_repeat	-11920.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	54.0	115.5	63.5	33.5	67.0	69.0
Merged-chr9-44124521-2	chr9	44124021	44125021	+	769.75	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152189, exon 2 of 2)	non-coding (NR_152189, exon 2 of 2)	9964.0	NR_152189	100038560.0	Mm.429758	NR_152189		Gm10687	-	predicted gene 10687	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45924702-2	chr7	45924202	45925202	+	769.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3276.0	NM_010129	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	0.0	6.5	6.5	0.0	21.0	9.5
Merged-chr10-117434222-2	chr10	117433713	117434713	+	769.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13222.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	2.0	1.0	0.0	0.0	0.0	0.0
Merged-chr7-44829571-2	chr7	44829165	44830165	+	769.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_053074, exon 2 of 2)	exon (NM_053074, exon 2 of 2)	-6623.0	NM_010215	14204.0	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	3.5	0.0	1.0	2.0	0.0	0.0
Merged-chr9-37147458-3	chr9	37146956	37147956	+	769.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148950)	promoter-TSS (NM_148950)	-134.0	NM_001029838	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr9-40482649-4	chr9	40482132	40483132	+	769.708313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 1 of 20)	intron (NM_001357617, intron 1 of 20)	-26868.0	NM_172768	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	12.5	11.0	6.0	6.0	44.0	17.5
Merged-chr17-56077596-3	chr17	56077053	56078053	+	769.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024432, intron 1 of 11)	intron (NM_024432, intron 1 of 11)	1780.0	NM_024432	66530.0	Mm.28000	NM_024432	ENSMUSG00000019578	Ubxn6	1200008L11Rik|2210415J11Rik|AU040909|Ubxd1|Ubxdc2	UBX domain protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-94017916-3	chr4	94017441	94018441	+	769.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	538855.0	NM_026368	67770.0	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	7.0	0.0	0.5	0.0	0.0	0.0
Merged-chr1-82797246-4	chr1	82796751	82797751	+	769.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-28795.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130629360-3	chr2	130628844	130629844	+	769.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080562, intron 1 of 5)	intron (NM_080562, intron 1 of 5)	683.0	NM_198176	380601.0	Mm.27090	NM_198176	ENSMUSG00000079043	Fastkd5	C78212|mKIAA1792	FAST kinase domains 5	protein-coding	55.0	103.5	123.0	98.5	118.0	153.5
Merged-chr8-109681626-3	chr8	109681095	109682095	+	769.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155034, intron 4 of 10)	MTB_Mm|LTR|ERVL-MaLR	11699.0	NR_155034	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	4.0	3.0	9.5	2.5	2.0	3.5
Merged-chr8-107116204-4	chr8	107115699	107116699	+	769.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19654.0	NR_104410	21750.0	Mm.6402	NM_009353	ENSMUSG00000031921	Terf2	TRF2	telomeric repeat binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121841491-2	chr5	121840991	121841991	+	769.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4632.0	NM_008507	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	5.5	12.5	7.5	3.5	26.0	13.0
Merged-chr4-55335204-3	chr4	55334715	55335715	+	769.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14827.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	10.0	0.0	0.0	0.0	8.0	2.0
Merged-chr10-39414446-2	chr10	39413946	39414946	+	769.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	44647.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60780520-2	chr11	60780020	60781020	+	769.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175491, exon 1 of 1)	3' UTR (NM_175491, exon 1 of 1)	2995.0	NM_175491	237782.0	Mm.57726	NM_175491	ENSMUSG00000049323	Smcr8	2310076G09Rik|AI642055|D030073L15Rik	Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-9701215-2	chr1	9700726	9701726	+	769.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1017.0	NM_008651	17864.0	Mm.479	NM_008651	ENSMUSG00000025912	Mybl1	A-myb|G1-419-6|repro9	myeloblastosis oncogene-like 1	protein-coding	12.5	29.5	12.5	5.5	18.5	16.0
Merged-chr19-5072741-2	chr19	5072220	5073220	+	769.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	4642.0	NM_054042	70445.0	Mm.29597	NM_054042	ENSMUSG00000056481	Cd248	2610111G01Rik|AI842296|Cd164l1|Tem1	CD248 antigen, endosialin	protein-coding	0.0	0.0	3.0	1.5	0.0	7.0
Merged-chr2-28592658-2	chr2	28592158	28593158	+	769.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9379.0	NM_001290484	70239.0	Mm.274120	NM_148928	ENSMUSG00000026816	Gtf3c5	2700084A09Rik|TFIIIC63|TFiiiC2-63	general transcription factor IIIC, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71331187-2	chr2	71330687	71331687	+	769.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 4 of 17)	intron (NM_172436, intron 4 of 17)	36367.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-101099725-2	chr9	101099225	101100225	+	769.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001100451, intron 1 of 1)	intron (NM_001100451, intron 1 of 1)	24963.0	NM_001100451	77853.0	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	MSL complex subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18310450-2	chr2	18309943	18310943	+	769.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190817, intron 3 of 12)	intron (NM_001190817, intron 3 of 12)	82387.0	NM_001190817	13418.0	Mm.246674	NM_007869	ENSMUSG00000026740	Dnajc1	4733401K02Rik|AA960110|D230036H06Rik|Dnajl1|ERdj1|ERj1p|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152124648-3	chr4	152124143	152125143	+	769.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207689, intron 7 of 9)	ORR1A3-int|LTR|ERVL-MaLR	4282.0	NM_019585	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60761732-3	chr13	60761226	60762226	+	769.5888669999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001285917, exon 26 of 27)	exon (NM_001285917, exon 26 of 27)	24638.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	3.0	6.5	0.0	0.0	1.0	4.0
Merged-chr8-123202450-4	chr8	123201945	123202945	+	769.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007876)	TTS (NM_007876)	10343.0	NM_145606	234852.0	Mm.41596	NM_145606	ENSMUSG00000000743	Chmp1a	2900018H07Rik|Pcoln3	charged multivesicular body protein 1A	protein-coding	3.0	12.5	3.0	3.0	15.5	7.0
Merged-chr16-18419607-4	chr16	18419106	18420106	+	769.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007744, intron 1 of 4)	B4A|SINE|B4	-6112.0	NM_001111063	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-63278348-3	chr13	63277875	63278875	+	769.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	18772.0	NR_045794	100504114.0	Mm.437070	NR_045794	ENSMUSG00000097242	Gm16907	-	predicted gene, 16907	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161033957-3	chr1	161033425	161034425	+	769.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153814)	promoter-TSS (NR_153814)	924.0	NM_001356489	240869.0	Mm.296127	NM_173424	ENSMUSG00000043467	Zbtb37	D430004I08Rik	zinc finger and BTB domain containing 37	protein-coding	27.5	50.0	30.0	43.5	81.0	68.0
Merged-chr7-63824242-3	chr7	63823736	63824736	+	769.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR10_RN|LTR|ERVK	-92621.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22625096-3	chr9	22624570	22625570	+	769.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360259, intron 9 of 22)	intron (NM_001360259, intron 9 of 22)	149355.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49267854-3	chr13	49267345	49268345	+	769.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 15 of 17)	ORR1E|LTR|ERVL-MaLR	-19139.0	NM_028340	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122830646-2	chr14	122830146	122831146	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 22 of 24)	MTA_Mm|LTR|ERVL-MaLR	-82384.0	NR_155287	105245866.0	Mm.390754	NM_001039531	ENSMUSG00000075463	Gm15735	4930594M22Rik|F930011C10Rik	predicted gene 15735	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97124187-2	chr7	97123687	97124687	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	42436.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34767931-2	chr2	34767431	34768431	+	769.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-4159.0	NM_001163434	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71555047-2	chr8	71554583	71555583	+	769.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001100462, exon 4 of 4)	3' UTR (NM_001100462, exon 4 of 4)	3788.0	NM_001100462	434325.0	Mm.33613	NM_001100462	ENSMUSG00000043664	Tmem221	-	transmembrane protein 221	protein-coding	1.0	1.5	1.0	0.0	0.0	0.0
Merged-chr7-48322599-2	chr7	48322099	48323099	+	769.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A2|LTR|ERVK	-65927.0	NM_207539	404240.0	Mm.357942	NM_207539	ENSMUSG00000050870	Mrgprb8	MrgB8	MAS-related GPR, member B8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38351902-2	chr2	38351402	38352402	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010710, intron 1 of 4)	CpG	594.0	NM_010710	16870.0	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119691308-2	chr13	119690808	119691808	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291439, intron 1 of 9)	intron (NM_001291439, intron 1 of 9)	957.0	NM_001291439	208715.0	Mm.61526	NM_145942	ENSMUSG00000093930	Hmgcs1	B130032C06Rik	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-90720489-2	chr6	90719989	90720989	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356440, intron 1 of 13)	intron (NM_001356440, intron 1 of 13)	-3960.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128389745-2	chr10	128389245	128390245	+	769.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105880)	TTS (NR_105880)	913.0	NR_105880	102465979.0		NR_105880	ENSMUSG00000106600	Mir6915	mmu-mir-6915	microRNA 6915	ncRNA	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr13-106941816-2	chr13	106941317	106942317	+	769.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20D|LTR|ERVK	-4859.0	NM_029665	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	0.0	0.0	1.5	0.0	0.0	1.5
Merged-chr11-95689277-2	chr11	95688777	95689777	+	769.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22320.0	NM_008831	18673.0	Mm.263862	NM_008831	ENSMUSG00000038845	Phb	Bap32	prohibitin	protein-coding	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-77462026-1	chr1	77461526	77462526	+	769.5	f0_balb.idr	intron (NM_007936, intron 3 of 17)	intron (NM_007936, intron 3 of 17)	34742.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-44565295-2	chr4	44564795	44565795	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008782, intron 8 of 9)	intron (NM_008782, intron 8 of 9)	42273.0	NR_039580	100628590.0		NR_039580	ENSMUSG00000092761	Mir5120	mmu-mir-5120|mu-mir-5120	microRNA 5120	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-9481747-2	chr11	9481247	9482247	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 41 of 61)	intron (NM_178259, intron 41 of 61)	289805.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94444551-2	chr11	94444051	94445051	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009783, intron 9 of 35)	intron (NM_009783, intron 9 of 35)	29647.0	NM_001177888	12291.0	Mm.29585	NM_009783	ENSMUSG00000020866	Cacna1g	Cav3.1d|[a]1G|a1G|alpha-1G|mKIAA1123	calcium channel, voltage-dependent, T type, alpha 1G subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118699990-2	chr7	118699514	118700514	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019580, intron 1 of 5)	intron (NM_019580, intron 1 of 5)	5724.0	NM_019580	56209.0	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	8.5	18.0	9.5	2.0	6.5	8.0
Merged-chr2-91071845-2	chr2	91071345	91072345	+	769.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1530.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	6.5	20.0	14.0	9.0	21.0	14.5
Merged-chr11-94355690-2	chr11	94355190	94356190	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 25 of 30)	MER5A1|DNA|hAT-Charlie	27689.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-24415178-2	chr8	24414678	24415678	+	769.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23768.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69086383-2	chr8	69085883	69086883	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153054, intron 1 of 16)	intron (NM_153054, intron 1 of 16)	-2353.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	1.0	12.5	15.5	12.0	53.0	29.5
Merged-chr12-103424386-2	chr12	103423886	103424886	+	769.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_020494, exon 2 of 9)	exon (NM_020494, exon 2 of 9)	1394.0	NM_001159502	27225.0	Mm.3935	NM_020494	ENSMUSG00000041645	Ddx24	1700055J08Rik|2510027P10Rik|AI649272	DEAD (Asp-Glu-Ala-Asp) box polypeptide 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74315446-2	chr17	74314946	74315946	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146224, intron 2 of 3)	intron (NM_001146224, intron 2 of 3)	765.0	NM_001146224	66310.0	Mm.28536	NM_024428	ENSMUSG00000024067	Dpy30	2810410M20Rik|C87842	dpy-30, histone methyltransferase complex regulatory subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-137957702-2	chr3	137957200	137958200	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 3 of 8)	intron (NM_011932, intron 3 of 8)	23849.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	6.5	0.0	6.0	0.0	6.0	0.5
Merged-chr7-80900574-2	chr7	80900074	80901074	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152101, intron 2 of 6)	intron (NR_152101, intron 2 of 6)	695.0	NR_152101	71968.0	Mm.274226	NM_028026	ENSMUSG00000025722	Wdr73	1200011I23Rik|2410008B13Rik|AI848574|C85352	WD repeat domain 73	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118802589-2	chr9	118802089	118803089	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 3 of 13)	intron (NM_001113514, intron 3 of 13)	90897.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62705924-2	chr4	62705424	62706424	+	769.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31950.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108758764-2	chr12	108758264	108759264	+	769.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-34547.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69964961-2	chr11	69964461	69965461	+	769.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016887)	promoter-TSS (NM_016887)	182.0	NM_001193619	53624.0	Mm.281896	NM_016887	ENSMUSG00000018569	Cldn7	-	claudin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111093676-2	chr8	111093176	111094176	+	769.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1069.0	NM_198308	319518.0	Mm.28350	NM_198308	ENSMUSG00000033624	Pdpr	4930402E16Rik|AU018056|mKIAA1990	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91388550-2	chr12	91388095	91389095	+	769.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-4186.0	NM_181815	75216.0	Mm.312204	NM_181815	ENSMUSG00000061533	Cep128	4930534B04Rik|5430424K18Rik|AI449708|AI480494|E230024F20	centrosomal protein 128	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11014017-2	chr16	11013517	11014517	+	769.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040518, exon 3 of 3)	non-coding (NR_040518, exon 3 of 3)	5119.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95562774-2	chr9	95562274	95563274	+	769.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_198414)	TTS (NM_198414)	2957.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-17893749-2	chr5	17893249	17894249	+	769.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4790.0	NM_001159558	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-25280378-2	chr4	25279878	25280878	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026194, intron 2 of 18)	intron (NM_026194, intron 2 of 18)	1443.0	NM_026194	67490.0	Mm.226295	NM_026194	ENSMUSG00000040359	Ufl1	1810074P20Rik|AI429228|Kiaa0776|Maxer|Rcad|mKIAA0776	UFM1 specific ligase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-81575459-2	chr17	81574959	81575959	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	162928.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6190299-2	chr4	6189799	6190799	+	769.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026534)	promoter-TSS (NM_026534)	-806.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	4.5	1.0	0.0	7.0	1.0	0.0
Merged-chr13-100660122-2	chr13	100659622	100660622	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027592, intron 2 of 4)	B2_Mm2|SINE|B2	8515.0	NM_001015889	108143.0	Mm.301148	NM_027139	ENSMUSG00000052293	Taf9	2310012M09Rik|AA673500|AU045423|TAFII31|TAFII32|Taf2g	TATA-box binding protein associated factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65700433-2	chr18	65699933	65700933	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177028, intron 1 of 14)	Lx9|LINE|L1	2165.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167844760-2	chr2	167844260	167845260	+	769.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87567.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4146556-2	chr19	4146056	4147056	+	769.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_206973)	TTS (NM_206973)	-2107.0	NM_011778	23789.0	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	7.5	50.5	47.5	7.5	51.0	45.0
Merged-chr5-99268200-2	chr5	99267718	99268718	+	769.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15291.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	81.5	145.5	80.0	64.0	144.0	87.0
Merged-chr12-24573439-2	chr12	24572939	24573939	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161406, intron 1 of 15)	intron (NM_001161406, intron 1 of 15)	1152.0	NM_001161406	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	0.0	4.0	0.5	3.0	0.0	3.5
Merged-chr14-55596766-2	chr14	55596266	55597266	+	769.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_194346, exon 11 of 21)	exon (NM_194346, exon 11 of 21)	5024.0	NM_194346	268749.0	Mm.23748	NM_194346	ENSMUSG00000047098	Rnf31	AL033293|BC031509|Flj10111|HOIP|Paul|mFLJ00217	ring finger protein 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8511732-3	chr12	8511267	8512267	+	769.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER68|LTR|ERVL	-11758.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	31.0	102.0	70.5	11.0	14.0	4.5
Merged-chr2-156472849-2	chr2	156472349	156473349	+	769.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291120, intron 2 of 22)	intron (NM_001291120, intron 2 of 22)	-2685.0	NM_001006664	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	0.5	5.5	6.0	11.0	16.0	11.5
Merged-chr11-74494103-2	chr11	74493603	74494603	+	769.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	96055.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31664922-4	chr17	31664423	31665423	+	769.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6159.0	NM_001357907	108121.0	Mm.379289	NM_024187	ENSMUSG00000061613	U2af1	2010107D16Rik	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-67519391-2	chr8	67518891	67519891	+	769.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4463.0	NM_008674	17962.0	Mm.57193	NM_008674	ENSMUSG00000056426	Nat3	-	N-acetyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33883186-3	chr16	33882687	33883687	+	769.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 4 of 14)	intron (NM_001145884, intron 4 of 14)	53522.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102284403-1	chr12	102283903	102284903	+	769.333313	f0_balb.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	762.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24813658-3	chr13	24813161	24814161	+	769.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_024473)	TTS (NM_024473)	12004.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-12023896-3	chr4	12023398	12024398	+	769.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57324.0	NR_040577	100503636.0	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-55520727-3	chr3	55520215	55521215	+	769.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357475, intron 16 of 16)	intron (NM_001357475, intron 16 of 16)	58987.0	NM_001357476	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62980643-3	chr18	62980139	62981139	+	769.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028017, intron 2 of 11)	intron (NM_028017, intron 2 of 11)	2723.0	NM_028017	108123.0	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-139015303-3	chr1	139014805	139015805	+	769.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	37648.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121284674-3	chr9	121284180	121285180	+	769.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7508.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	3.0	0.0	1.5	2.0	1.5	0.0
Merged-chr13-45311639-3	chr13	45311073	45312073	+	769.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78169.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	4.5	9.5	1.0	0.0	2.0	6.5
Merged-chr11-100736217-4	chr11	100735710	100736710	+	769.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305003, intron 1 of 5)	intron (NM_001305003, intron 1 of 5)	2005.0	NM_024456	19345.0	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-128597481-3	chr1	128597024	128598024	+	769.277771	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-5225.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	11.5	5.0	0.0	14.0	6.0	8.0
Merged-chr18-34163244-3	chr18	34162736	34163736	+	769.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57748.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31290232-7	chr5	31289833	31290833	+	769.257141	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026298, intron 1 of 47)	intron (NM_026298, intron 1 of 47)	781.0	NM_026298	67661.0	Mm.293023	NM_026298	ENSMUSG00000038564	Ift172	4930553F24Rik|Slb|avc1|wim	intraflagellar transport 172	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37145300-2	chr9	37144789	37145789	+	769.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 1 of 12)	CpG	2033.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	0.0	0.0	0.0	3.5	0.0	0.0
Merged-chr9-119938559-2	chr9	119938059	119939059	+	769.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_028735, intron 1 of 28)	B1_Mur1|SINE|Alu	953.0	NM_028735	74052.0	Mm.189573	NM_028735	ENSMUSG00000032514	Ttc21a	4921538N17Rik|AA387572|Thm2	tetratricopeptide repeat domain 21A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34113673-2	chr17	34113314	34114314	+	769.25	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037970, exon 10 of 13)	non-coding (NR_037970, exon 10 of 13)	6086.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	2.5	2.0	4.0	0.0	5.5	0.5
Merged-chr4-132500564-2	chr4	132500064	132501064	+	769.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_144907, intron 2 of 9)	B1_Mur3|SINE|Alu	9892.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91417083-2	chr16	91416583	91417583	+	769.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008349, intron 4 of 6)	intron (NM_008349, intron 4 of 6)	10848.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69398199-2	chr11	69397704	69398704	+	769.233337	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025915)	promoter-TSS (NM_025915)	30.0	NM_025915	67020.0	Mm.390406	NM_025915	ENSMUSG00000045377	Tmem88	2600017H02Rik	transmembrane protein 88	protein-coding	0.0	0.0	0.0	2.0	0.0	0.5
Merged-chr4-4791377-3	chr4	4790865	4791865	+	769.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177730, intron 1 of 4)	intron (NM_177730, intron 1 of 4)	1941.0	NM_177730	242291.0	Mm.218889	NM_177730	ENSMUSG00000066324	Impad1	1110001C20Rik|AA408880|AI451589|AL022796|B230207P20|Jaws|gPAPP	inositol monophosphatase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-86903314-4	chr8	86902802	86903802	+	769.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18044.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	4.0	1.5	8.5	1.0	7.0	10.0
Merged-chr9-44170174-4	chr9	44169685	44170685	+	769.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 3 of 15)	intron (NM_007619, intron 3 of 15)	35527.0	NM_001359530	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21409821-2	chr14	21409321	21410321	+	769.174988	f1_balb.idr|f1_c57bl6.idr	intron (NM_134079, intron 9 of 10)	intron (NM_134079, intron 9 of 10)	-89949.0	NM_001205241	54169.0	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	8.0	11.0	10.5	8.0	11.0	11.0
Merged-chr10-98977059-2	chr10	98976559	98977559	+	769.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 2 of 21)	intron (NM_001359507, intron 2 of 21)	61907.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124837119-3	chr8	124836669	124837669	+	769.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25860.0	NM_025615	66523.0	Mm.436864	NM_025615	ENSMUSG00000031984	2810004N23Rik	3110004G14Rik|Ayu21-55|Gt(pU21)55Imeg|GtAyu21-55	RIKEN cDNA 2810004N23 gene	protein-coding	3.0	8.0	11.0	46.0	86.0	71.5
Merged-chr19-41323530-2	chr19	41323030	41324030	+	769.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 7 of 16)	intron (NM_031376, intron 7 of 16)	-59526.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34256939-2	chr17	34256444	34257444	+	769.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6283.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	16.0	52.0	20.5	41.0	55.5	24.0
Merged-chr13-97486036-4	chr13	97485468	97486468	+	769.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110430, intron 2 of 2)	intron (NR_110430, intron 2 of 2)	3267.0	NR_110431	100039691.0	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	1.0	1.5	1.5	0.0	0.0	1.0
Merged-chr2-153348593-4	chr2	153348095	153349095	+	769.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039939, intron 1 of 11)	intron (NM_001039939, intron 1 of 11)	2456.0	NM_001039939	228790.0	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10219391-2	chr19	10218891	10219891	+	769.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033481, intron 10 of 25)	intron (NM_001033481, intron 10 of 25)	13358.0	NM_001163431	69038.0	Mm.375100	NM_026919	ENSMUSG00000036372	Tmem258	1810006K21Rik	transmembrane protein 258	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118920915-2	chr9	118920415	118921415	+	769.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5621.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr9-61389604-4	chr9	61389099	61390099	+	769.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083928, intron 4 of 19)	intron (NM_001083928, intron 4 of 19)	17233.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-9056245-4	chr5	9055760	9056760	+	769.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44477.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-56612694-2	chr13	56612239	56613239	+	769.125	f1_balb.idr|f1_c57bl6.idr	intron (NR_155548, intron 1 of 16)	intron (NR_155548, intron 1 of 16)	3153.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	10.0	28.0	26.0	3.5	45.5	26.0
Merged-chr11-106098470-3	chr11	106097939	106098939	+	769.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 2 of 15)	intron (NM_011947, intron 2 of 15)	13537.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-42074614-4	chr13	42074156	42075156	+	769.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	22635.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7605798-3	chr9	7605299	7606299	+	769.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22432.0	NM_013903	30800.0	Mm.390121	NM_013903	ENSMUSG00000018620	Mmp20	-	matrix metallopeptidase 20 (enamelysin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83213531-4	chr17	83212994	83213994	+	769.027771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1789.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-31949580-4	chr11	31949097	31950097	+	769.012512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16036.0	NM_026262	67592.0	Mm.78654	NM_026262	ENSMUSG00000020299	4930524B15Rik	-	RIKEN cDNA 4930524B15 gene	protein-coding	0.0	3.5	16.0	10.0	4.5	10.0
Merged-chr9-15060862-1	chr9	15060362	15061362	+	769.0	f0_balb.idr	exon (NM_001164797, exon 16 of 20)	exon (NM_001164797, exon 16 of 20)	-15384.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49301771-2	chr13	49301271	49302271	+	769.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 1 of 17)	intron (NM_015759, intron 1 of 17)	7437.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46075366-2	chr19	46074866	46075866	+	769.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053086)	promoter-TSS (NM_053086)	-481.0	NM_001039352	70769.0	Mm.402190	NM_053086	ENSMUSG00000015176	Nolc1	NOPP130|NOPP140|P130	nucleolar and coiled-body phosphoprotein 1	protein-coding	0.0	0.0	2.5	0.0	0.0	1.0
Merged-chr9-114694311-3	chr9	114693831	114694831	+	769.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146229, intron 2 of 12)	ID_B1|SINE|B4	5500.0	NM_146229	235661.0	Mm.128627	NM_146229	ENSMUSG00000032435	Dync1li1	1110053F02Rik|Dnclic1|LIC-1	dynein cytoplasmic 1 light intermediate chain 1	protein-coding	3.5	0.0	2.0	0.0	0.0	2.0
Merged-chr12-100537781-2	chr12	100537281	100538281	+	769.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16959.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124454971-2	chr6	124454471	124455471	+	769.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346656, intron 8 of 17)	Lx5c|LINE|L1	7773.0	NM_001346656	232370.0	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109186058-2	chr8	109185558	109186558	+	769.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_126329, intron 5 of 9)	intron (NR_126329, intron 5 of 9)	63687.0	NR_151498	105243282.0	Mm.203332	NR_151498		4922502B01Rik	2900056M07Rik	RIKEN cDNA 4922502B01 gene	ncRNA	2.0	2.0	2.5	0.0	2.0	4.0
Merged-chr17-36849080-2	chr17	36848569	36849569	+	769.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025599, intron 2 of 9)	intron (NM_001025599, intron 2 of 9)	11923.0	NM_001286726	22670.0	Mm.34587	NM_030698	ENSMUSG00000024457	Trim26	AI462198|Zfp173|Zfp1736	tripartite motif-containing 26	protein-coding	12.0	16.0	23.0	19.0	21.0	28.0
Merged-chr16-61932269-1	chr16	61931769	61932769	+	769.0	f1_balb.idr	Intergenic	L1VL1|LINE|L1	854447.0	NM_178925	106338.0	Mm.26321	NM_178925	ENSMUSG00000050312	Nsun3	6720484A09Rik|AU022521	NOL1/NOP2/Sun domain family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-35751235-2	chr5	35750735	35751735	+	769.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6645.0	NM_001177697	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	3.5	1.0	0.0	0.0	2.0	1.5
Merged-chr15-93273114-2	chr15	93272614	93273614	+	769.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346785, intron 1 of 7)	intron (NM_001346785, intron 1 of 7)	2065.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73489444-4	chr13	73488929	73489929	+	769.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145376, intron 3 of 13)	intron (NM_145376, intron 3 of 13)	22046.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23646846-2	chr18	23646346	23647346	+	769.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361215, intron 16 of 19)	intron (NM_001361215, intron 16 of 19)	105459.0	NR_126066	100502834.0	Mm.213614	NR_126066	ENSMUSG00000086287	Gm15972	-	predicted gene 15972	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53428015-3	chr19	53427495	53428495	+	769.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36801.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44923062-3	chr13	44922557	44923557	+	769.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025772, intron 9 of 9)	intron (NM_025772, intron 9 of 9)	79039.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25713690-2	chr7	25713190	25714190	+	769.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028771, intron 4 of 4)	intron (NM_028771, intron 4 of 4)	5363.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93521550-1	chr10	93521050	93522050	+	769.0	f0_balb.idr	Intergenic	(CAAA)n|Simple_repeat|Simple_repeat	18483.0	NM_027908	71761.0	Mm.244518	NM_027908	ENSMUSG00000015890	Amdhd1	1300019J08Rik	amidohydrolase domain containing 1	protein-coding	14.0	15.5	3.0	7.5	18.0	2.0
Merged-chr3-99981221-1	chr3	99980721	99981721	+	769.0	f0_balb.idr	intron (NM_028892, intron 4 of 48)	GSAT_MM|Satellite|Satellite	95804.0	NM_028892	74362.0	Mm.55847	NM_028892	ENSMUSG00000027867	Spag17	4931427F14Rik|PF6|Spag17-ps	sperm associated antigen 17	protein-coding	4.0	4.0	1.5	0.0	3.5	0.0
Merged-chr19-6375846-2	chr19	6375346	6376346	+	769.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_122118, exon 12 of 12)	non-coding (NR_122118, exon 12 of 12)	-8562.0	NM_011224	19309.0	Mm.27806	NM_011224	ENSMUSG00000032648	Pygm	AI115133|PG	muscle glycogen phosphorylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-30002117-1	chr17	30001617	30002617	+	769.0	f1_balb.idr	Intergenic	Intergenic	-2922.0	NM_148926	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0.0	1.0	1.0	0.0	1.5	0.5
Merged-chr1-138060313-2	chr1	138059813	138060813	+	769.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	93674.0	NR_029820	723890.0		NR_029820	ENSMUSG00000065458	Mir181b-1	Mirn181b-1|mir-181b-1	microRNA 181b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-10138781-2	chr14	10138281	10139281	+	769.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 5 of 9)	PB1D10|SINE|Alu	254686.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27210486-2	chr2	27209986	27210986	+	769.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138665, intron 17 of 20)	intron (NM_138665, intron 17 of 20)	36817.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-19617579-2	chr9	19617079	19618079	+	769.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-4512.0	NM_172918	244713.0	Mm.67366	NM_172918	ENSMUSG00000057551	Zfp317	4932416G03|D230022C05Rik|KRAB9|Zfp67|Zfp75|mszf40	zinc finger protein 317	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-51931511-3	chr1	51931037	51932037	+	769.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15559.0	NM_010863	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	12.0	3.0	5.0	5.5	6.0	9.0
Merged-chr19-18620022-4	chr19	18619500	18620500	+	769.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	11813.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124685414-2	chr2	124684914	124685914	+	769.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31833.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47009112-3	chr17	47008585	47009585	+	769.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146078, intron 1 of 46)	intron (NM_146078, intron 1 of 46)	1447.0	NM_146078	224826.0	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115644442-2	chr11	115643942	115644942	+	769.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008163, exon 6 of 6)	3' UTR (NM_008163, exon 6 of 6)	-16147.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99152981-2	chr9	99152481	99153481	+	769.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12770.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165660407-2	chr1	165659907	165660907	+	769.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 2 of 5)	intron (NM_001038846, intron 2 of 5)	-25866.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-34488836-1	chr9	34488336	34489336	+	769.0	f0_balb.idr	5' UTR (NM_026324, exon 1 of 16)	5' UTR (NM_026324, exon 1 of 16)	105.0	NM_001190914	67703.0	Mm.220710	NM_026324	ENSMUSG00000032036	Kirrel3	1500010O20Rik|2900036G11Rik|NEPH2|SST4|mKIAA1867	kirre like nephrin family adhesion molecule 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-76622034-2	chr1	76621534	76622534	+	769.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	112474.0	NR_105761	102465175.0		NR_105761	ENSMUSG00000098611	Mir6343	Gm27304|mmu-mir-6343	microRNA 6343	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25222566-2	chr12	25222066	25223066	+	769.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93392.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152476759-2	chr4	152476259	152477259	+	769.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355738)	promoter-TSS (NM_001355738)	53.0	NM_001355738	260305.0	Mm.302496	NM_153424	ENSMUSG00000039577	Nphp4	4930564O18Rik|nmf192	nephronophthisis 4 (juvenile) homolog (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105410886-1	chr5	105410386	105411386	+	769.0	f1_balb.idr	Intergenic	Intergenic	-4889.0	NM_001033550	433926.0	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	2210408K08Rik|R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	0.0	0.0	0.0	1.5	0.0	3.0
Merged-chr18-34849794-2	chr18	34849294	34850294	+	769.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9205.0	NM_144865	225362.0	Mm.293588	NM_144865	ENSMUSG00000038555	Reep2	-	receptor accessory protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23952083-2	chr18	23951583	23952583	+	769.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-2605.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75576041-1	chr11	75575541	75576541	+	769.0	f1_balb.idr	3' UTR (NM_173388, exon 14 of 14)	3' UTR (NM_173388, exon 14 of 14)	-12038.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	0.5	2.0	0.5	3.5	2.5	2.0
Merged-chr11-115716405-2	chr11	115715905	115716905	+	769.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7808.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-140722918-1	chr6	140722418	140723418	+	769.0	f0_balb.idr	Intergenic	Intergenic	96033.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60841589-1	chr18	60841089	60842089	+	769.0	f1_c57bl6.idr	intron (NM_011552, intron 3 of 24)	intron (NM_011552, intron 3 of 24)	7375.0	NM_011552	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	2.0	0.0	2.0	0.0	9.0	2.5
Merged-chr1-166244576-2	chr1	166244076	166245076	+	769.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	-5832.0	NM_175296	98558.0	Mm.26189	NM_175296	ENSMUSG00000040629	Mael	4933405K18Rik|AU019877	maelstrom spermatogenic transposon silencer	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156985922-2	chr1	156985422	156986422	+	769.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46296.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	5.5	46.5	13.0	4.0	6.5	13.0
Merged-chr8-41033727-1	chr8	41033227	41034227	+	769.0	f1_c57bl6.idr	intron (NM_001005863, intron 5 of 13)	Lx4A|LINE|L1	8204.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	23.5	38.0	30.5	5.5	5.0	14.0
Merged-chr13-51952624-2	chr13	51952124	51953124	+	769.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105949.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29752811-2	chr17	29752311	29753311	+	769.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35794.0	NM_001163741	68597.0	Mm.390979	NM_026782	ENSMUSG00000024018	Ccdc167	1110021J02Rik	coiled-coil domain containing 167	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-87404059-2	chr18	87403559	87404559	+	769.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	691748.0	NM_001361145	12405.0	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-70805490-4	chr6	70804995	70805995	+	768.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13320.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21826084-4	chr10	21825578	21826578	+	768.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56106.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.0	0.0	1.5	0.0	3.0	1.0
Merged-chr18-83819130-4	chr18	83818594	83819594	+	768.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	267468.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5885743-3	chr17	5885289	5886289	+	768.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025664, intron 1 of 17)	intron (NM_025664, intron 1 of 17)	44409.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-56166365-3	chr9	56165890	56166890	+	768.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5320.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-21830117-3	chr1	21829642	21830642	+	768.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023872, intron 1 of 13)	intron (NM_023872, intron 1 of 13)	131800.0	NM_001160139	226922.0	Mm.336519	NM_023872	ENSMUSG00000028033	Kcnq5	7730402H11|9230107O05Rik|AA589396|D1Mgi1	potassium voltage-gated channel, subfamily Q, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11529317-4	chr11	11528722	11529722	+	768.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39956.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	3.0	13.0	1.5	1.5	2.0	11.0
Merged-chr4-149158833-3	chr4	149158327	149159327	+	768.922241	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081274, intron 6 of 12)	intron (NM_001081274, intron 6 of 12)	7255.0	NM_001356332	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11387287-3	chr4	11386747	11387747	+	768.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290383)	promoter-TSS (NM_001290383)	-464.0	NM_194055	207920.0	Mm.387719	NM_194055	ENSMUSG00000040728	Esrp1	2210008M09Rik|A630065D16|BC031468|Rbm35a	epithelial splicing regulatory protein 1	protein-coding	0.0	0.5	0.0	0.0	4.5	0.0
Merged-chr2-102882345-4	chr2	102881856	102882856	+	768.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	19309.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	7.0	34.0	14.0	12.5	12.5	6.5
Merged-chr10-96364011-4	chr10	96363506	96364506	+	768.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137799.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166270218-3	chr2	166269694	166270694	+	768.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	-3714.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-33195228-3	chr14	33194749	33195749	+	768.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20D|LTR|ERVK	-10183.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-72934314-3	chr17	72933797	72934797	+	768.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029999, intron 2 of 2)	intron (NM_029999, intron 2 of 2)	15992.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	5.0	1.0	11.0	1.5	7.0	7.0
Merged-chr17-24628855-2	chr17	24628374	24629374	+	768.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039363, intron 5 of 39)	intron (NM_001039363, intron 5 of 39)	3753.0	NM_011647	22084.0	Mm.30435	NM_011647	ENSMUSG00000002496	Tsc2	Nafld|Tcs2	tuberous sclerosis 2	protein-coding	4.0	1.0	0.5	2.5	5.0	1.0
Merged-chr3-107613173-2	chr3	107612673	107613673	+	768.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153563, exon 21 of 21)	3' UTR (NM_153563, exon 21 of 21)	18142.0	NM_007441	11694.0	Mm.10112	NM_007441	ENSMUSG00000014603	Alx3	-	aristaless-like homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137968404-2	chr4	137967897	137968897	+	768.833374	f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-25059.0	NM_001256198	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	0.0	5.5	3.5	10.5	0.0	13.0
Merged-chr19-53403383-2	chr19	53402883	53403883	+	768.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12749.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69327222-2	chr11	69326722	69327722	+	768.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010599, intron 1 of 13)	intron (NM_010599, intron 1 of 13)	964.0	NM_010599	16499.0	Mm.232472	NM_010599	ENSMUSG00000018470	Kcnab3	C330022D06Rik|Kcnab4|mKv(beta)4	potassium voltage-gated channel, shaker-related subfamily, beta member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21012321-2	chr13	21011821	21012821	+	768.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_012054, intron 19 of 20)	intron (NM_012054, intron 19 of 20)	60978.0	NM_146535	258528.0	Mm.377554	NM_146535	ENSMUSG00000042869	Olfr1370	MOR256-14	olfactory receptor 1370	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr7-126794256-3	chr7	126793746	126794746	+	768.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177308)	TTS (NM_001177308)	-1699.0	NM_019674	56420.0	Mm.41998	NM_019674	ENSMUSG00000030697	Ppp4c	1110002D08Rik|AU016079|PP-X|PP4C|Ppx|pp4	protein phosphatase 4, catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124902151-3	chr6	124901698	124902698	+	768.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9507.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56269984-2	chr17	56269484	56270484	+	768.833313	f1_balb.idr|f1_c57bl6.idr	exon (NM_174989, exon 2 of 2)	exon (NM_174989, exon 2 of 2)	6783.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57538219-3	chr16	57537722	57538722	+	768.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-11020.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	10.5	9.5	6.5	1.5	5.0	1.5
Merged-chr10-110794744-2	chr10	110794249	110795249	+	768.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49310.0	NM_178609	52679.0	Mm.11747	NM_178609	ENSMUSG00000020185	E2f7	A630014C11Rik|D10Ertd739e|E2F-7	E2F transcription factor 7	protein-coding	4.5	8.5	1.0	4.0	0.0	0.0
Merged-chr17-32403015-4	chr17	32402518	32403518	+	768.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029458)	promoter-TSS (NR_029458)	4.0	NR_029458	664702.0	Mm.381066	NR_029458		A530088E08Rik	-	RIKEN cDNA A530088E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-56107348-4	chr10	56106850	56107850	+	768.825012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163833, intron 1 of 1)	intron (NM_001163833, intron 1 of 1)	433.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-43492895-4	chr11	43492402	43493402	+	768.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18596.0	NM_026979	69183.0	Mm.390374	NM_026979	ENSMUSG00000046491	C1qtnf2	1810033K05Rik|CTRP2	C1q and tumor necrosis factor related protein 2	protein-coding	0.0	4.0	1.0	0.0	0.0	0.0
Merged-chr8-106169703-3	chr8	106169152	106170152	+	768.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357381, intron 1 of 9)	intron (NM_001357381, intron 1 of 9)	731.0	NM_001357381	330836.0	Mm.46749	NM_178798	ENSMUSG00000031904	Slc7a6	AI643885|LAT-2|LAT3|y+LAT-2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3387270-4	chr11	3386778	3387778	+	768.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010718, intron 2 of 15)	intron (NM_010718, intron 2 of 15)	-15874.0	NM_173053	16886.0	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41388715-4	chr4	41388206	41389206	+	768.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290454, exon 6 of 6)	exon (NM_001290454, exon 6 of 6)	36743.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35109911-2	chr8	35109468	35110468	+	768.791626	f0_balb.idr|f1_balb.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-144278.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	33.5	44.0	29.0	31.5	57.5	61.5
Merged-chr1-45872389-4	chr1	45871871	45872871	+	768.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53223.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32225642-2	chr11	32225128	32226128	+	768.791626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010822)	promoter-TSS (NM_010822)	-877.0	NM_010822	268395.0	Mm.263161	NM_010822	ENSMUSG00000020287	Mpg	9830006D05|AI326268|APNG|Aag|Mid1	N-methylpurine-DNA glycosylase	protein-coding	8.5	12.5	2.5	3.0	0.0	0.0
Merged-chr12-3098379-2	chr12	3097879	3098879	+	768.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137412.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49075834-3	chr11	49075333	49076333	+	768.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271677)	promoter-TSS (NM_001271677)	-754.0	NM_001271677	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100503578-2	chr12	100503078	100504078	+	768.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 1 of 19)	intron (NM_001033213, intron 1 of 19)	17244.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8251750-4	chr10	8251216	8252216	+	768.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 5 of 7)	intron (NM_177387, intron 5 of 7)	267109.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106329328-4	chr11	106328810	106329810	+	768.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133199, intron 14 of 23)	intron (NM_133199, intron 14 of 23)	-14748.0	NM_001313939	15985.0	Mm.2987	NM_008339	ENSMUSG00000040592	Cd79b	B29|Ig-beta|Igb|Igbeta	CD79B antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106151780-2	chr11	106151280	106152280	+	768.6999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 14 of 15)	intron (NM_011947, intron 14 of 15)	8147.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10523022-3	chr16	10522528	10523528	+	768.688904	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007575, intron 15 of 18)	B3|SINE|B2	20026.0	NM_021428	58239.0	Mm.353006	NM_021428	ENSMUSG00000038055	Dexi	1810029J14Rik|AI836170|AW413143|D16Bwg0586e|Myle	dexamethasone-induced transcript	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120355767-3	chr11	120355255	120356255	+	768.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-5779.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19712680-3	chr7	19712202	19713202	+	768.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109748, intron 3 of 8)	B1_Mm|SINE|Alu	2727.0	NM_001109748	53333.0	Mm.61682	NM_016871	ENSMUSG00000002984	Tomm40	AW539759|Mom35|Tom40	translocase of outer mitochondrial membrane 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64022479-3	chr15	64022040	64023040	+	768.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144846, intron 1 of 11)	MIR3|SINE|MIR	-24474.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0	3.0	6.0	0.0	8.0	3.0
Merged-chr19-12026908-3	chr19	12026437	12027437	+	768.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9803.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25768003-3	chr14	25767496	25768496	+	768.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 1 of 3)	intron (NM_001101433, intron 1 of 3)	860.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-18941686-3	chr10	18941176	18942176	+	768.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14_RN|LTR|ERV1	70287.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	3.5	2.5	12.5	0.0	9.5	15.0
Merged-chr4-139121164-2	chr4	139120664	139121664	+	768.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163006, intron 1 of 3)	intron (NM_001163006, intron 1 of 3)	9873.0	NR_033745	433771.0	Mm.305990	NM_001163006	ENSMUSG00000050608	Minos1	2310028O11Rik	mitochondrial inner membrane organizing system 1	protein-coding	1.5	6.0	3.5	10.5	9.5	9.0
Merged-chr5-137791797-2	chr5	137791297	137792297	+	768.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005426, intron 1 of 16)	B2_Mm2|SINE|B2	3995.0	NM_001005426	381678.0	Mm.332765	NM_001005426	ENSMUSG00000037108	Zcwpw1	Gm1053	zinc finger, CW type with PWWP domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102346642-2	chr12	102346156	102347156	+	768.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 3 of 9)	B3|SINE|B2	63015.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	2.5	0.5	11.0	0.0	4.0	3.0
Merged-chr2-128393097-4	chr2	128392612	128393612	+	768.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	36239.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87230659-4	chr1	87230154	87231154	+	768.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023314, intron 6 of 6)	intron (NM_023314, intron 6 of 6)	16715.0	NM_001039169	26987.0	Mm.227183	NM_023314	ENSMUSG00000026254	Eif4e2	2700069E09Rik|AI036339|AV129531|D0H0S6743E|Eif4el3	eukaryotic translation initiation factor 4E member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38374897-3	chr15	38374403	38375403	+	768.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74192.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52952479-2	chr2	52951979	52952979	+	768.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	94611.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-58198714-4	chr2	58198216	58199216	+	768.587524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34742.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107692447-2	chr13	107691947	107692947	+	768.583374	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045900)	TTS (NR_045900)	5050.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-52166889-3	chr1	52166375	52167375	+	768.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081081, intron 17 of 17)	intron (NM_001081081, intron 17 of 17)	47253.0	NM_001205313	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-17124432-5	chr19	17123930	17124930	+	768.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_181348, exon 8 of 20)	exon (NM_181348, exon 8 of 20)	168312.0	NM_181348	353211.0	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	2.5	6.5	2.5	0.0	2.0	1.0
Merged-chr8-35408041-3	chr8	35407517	35408517	+	768.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32276.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	12.5	1.5	1.5	17.0	8.0	16.5
Merged-chr19-40697765-3	chr19	40697265	40698265	+	768.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	37995.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	16.0	0.5	1.5	1.0	6.5	11.5
Merged-chr8-111545665-3	chr8	111545207	111546207	+	768.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168623, intron 1 of 4)	B1_Mm|SINE|Alu	7364.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	0.0	2.5	0.0	0.0	9.5	3.0
Merged-chr5-38500093-3	chr5	38499600	38500600	+	768.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145559, intron 1 of 10)	RMER19C|LTR|ERVK	2052.0	NM_145559	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	6.5	18.5	10.5	0.0	0.0	0.0
Merged-chr4-114863407-3	chr4	114862901	114863901	+	768.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41681.0	NR_033617	433746.0	Mm.388908	NR_033617	ENSMUSG00000055198	Gm12830	-	predicted gene 12830	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114702794-4	chr5	114702284	114703284	+	768.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4995.0	NM_029992	77832.0	Mm.239698	NM_029992	ENSMUSG00000002486	Tchp	A930031F18Rik|AV279199	trichoplein, keratin filament binding	protein-coding	0.0	0.0	2.5	0.0	0.0	2.5
Merged-chr13-103505214-3	chr13	103504720	103505720	+	768.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-170728.0	NM_175171	328329.0	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37482783-4	chr13	37482291	37483291	+	768.520813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137446.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	40.5	47.5	43.5	57.5	77.0	56.5
Merged-chr3-147669046-2	chr3	147668546	147669546	+	768.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	816679.0	NM_001302957	70892.0	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165717255-1	chr1	165716755	165717755	+	768.5	f0_balb.idr	Intergenic	IMPB_01|Satellite|Satellite	-9161.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-162565723-2	chr1	162565224	162566224	+	768.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4791.0	NM_001356527	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	3.5	16.0	6.5	3.0	16.0	15.0
Merged-chr4-142044834-2	chr4	142044334	142045334	+	768.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	26936.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132528227-2	chr4	132527727	132528727	+	768.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	7187.0	NM_007512	11983.0	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102034081-2	chr7	102033581	102034581	+	768.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 4 of 8)	L2b|LINE|L2	-15926.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0.0	5.5	6.0	0.0	5.0	6.0
Merged-chr17-35679520-2	chr17	35679020	35680020	+	768.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5777.0	NM_010364	14885.0	Mm.10182	NM_010364	ENSMUSG00000001524	Gtf2h4	AW545633|BTF2 p52|p52	general transcription factor II H, polypeptide 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59736988-2	chr9	59736488	59737488	+	768.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001172071, exon 3 of 3)	3' UTR (NM_001172071, exon 3 of 3)	13661.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-126552342-2	chr2	126551842	126552842	+	768.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011978)	promoter-TSS (NM_011978)	-682.0	NM_011978	26458.0	Mm.290044	NM_011978	ENSMUSG00000027359	Slc27a2	ACSVL1|FATP2|VLCS|Vlac|Vlacs	solute carrier family 27 (fatty acid transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-84050631-2	chr6	84050131	84051131	+	768.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 3 of 54)	intron (NM_001077694, intron 3 of 54)	31245.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30966568-2	chr2	30966068	30967068	+	768.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144884, intron 2 of 4)	intron (NM_144884, intron 2 of 4)	1350.0	NM_144884	30931.0	Mm.154994	NM_144884	ENSMUSG00000026849	Tor1a	DQ2|Dyt1|torsinA	torsin family 1, member A (torsin A)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88843328-2	chr6	88842828	88843828	+	768.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045880, intron 1 of 2)	intron (NR_045880, intron 1 of 2)	474.0	NR_045880	100038356.0	Mm.442704	NR_045880	ENSMUSG00000085828	Gm15612	-	predicted gene 15612	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97331051-2	chr6	97330551	97331551	+	768.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 8 of 23)	MTEa|LTR|ERVL-MaLR	-78271.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	3.0	0.0	1.0	2.0	0.0	3.0
Merged-chr1-72019068-1	chr1	72018568	72019568	+	768.5	f0_balb.idr	Intergenic	Intergenic	-13873.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31186694-2	chr16	31186194	31187194	+	768.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030138, intron 1 of 22)	intron (NM_030138, intron 1 of 22)	14544.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-129576377-2	chr7	129575877	129576877	+	768.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15486.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12781014-2	chr17	12780514	12781514	+	768.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_027784, intron 2 of 2)	L1MD1|LINE|L1	-11308.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75767084-2	chr10	75766584	75767584	+	768.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2727.0	NM_172549	104248.0	Mm.257404	NM_172549	ENSMUSG00000020196	Cabin1	A330070M20Rik|Cain|Ppp3in	calcineurin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74262565-2	chr1	74262065	74263065	+	768.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029711, exon 7 of 10)	exon (NM_029711, exon 7 of 10)	-16035.0	NM_174985	227289.0	Mm.246587	NM_174985	ENSMUSG00000064272	Gpbar1	BG37|GPCR|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98660714-2	chr15	98660214	98661214	+	768.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080981, intron 1 of 16)	L2b|LINE|L2	2175.0	NM_001080981	74351.0	Mm.45725	NM_001080981	ENSMUSG00000003360	Ddx23	3110082M05Rik|4921506D17Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88732482-3	chr10	88731973	88732973	+	768.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025859, intron 1 of 5)	intron (NM_025859, intron 1 of 5)	1059.0	NM_025859	104303.0	Mm.291247	NM_025859	ENSMUSG00000060904	Arl1	2310008D22Rik|AU019749	ADP-ribosylation factor-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129061535-2	chr4	129061035	129062035	+	768.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 1 of 8)	B1_Mur3|SINE|Alu	3264.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24778577-4	chr16	24778077	24779077	+	768.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 8 of 12)	intron (NM_178665, intron 8 of 12)	56722.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63804560-2	chr9	63804060	63805060	+	768.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46566.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78372307-2	chr10	78371807	78372807	+	768.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-20607.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153490096-2	chr1	153489596	153490596	+	768.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2436.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142016802-2	chr7	142016302	142017302	+	768.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357705, intron 1 of 4)	intron (NM_001357705, intron 1 of 4)	24623.0	NR_037291	100526509.0		NR_037291	ENSMUSG00000092652	Mir3104	mir-3104|mmu-mir-3104	microRNA 3104	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134188687-2	chr5	134188187	134189187	+	768.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359852, intron 1 of 14)	intron (NM_001359852, intron 1 of 14)	4649.0	NM_053266	114674.0	Mm.218744	NM_053266	ENSMUSG00000015942	Gtf2ird2	1700012P16Rik	GTF2I repeat domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-72580417-2	chr9	72579917	72580917	+	768.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033536, intron 2 of 8)	intron (NM_001033536, intron 2 of 8)	48177.0	NM_001033536	319758.0	Mm.32081	NM_001033536	ENSMUSG00000037674	Rfx7	2510005N23Rik|9930116O05Rik|D130086K05Rik|Rfxdc2	regulatory factor X, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101667190-2	chr11	101666690	101667690	+	768.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_025404, exon 2 of 2)	exon (NM_025404, exon 2 of 2)	1649.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21173523-2	chr5	21173023	21174023	+	768.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-2756.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56626365-2	chr17	56625865	56626865	+	768.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357897)	promoter-TSS (NM_001357897)	538.0	NM_028782	74142.0	Mm.329136	NM_028782	ENSMUSG00000041168	Lonp1	1200017E13Rik|LON|Prss15	lon peptidase 1, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52963602-2	chr2	52963133	52964133	+	768.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	105765.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62284098-2	chr4	62283598	62284598	+	768.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2331.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65654783-2	chr3	65654283	65655283	+	768.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4505.0	NR_106200	102465905.0		NR_106200	ENSMUSG00000098944	Mir8120	Gm27637|mmu-mir-8120	microRNA 8120	ncRNA	0.0	3.5	4.0	17.5	0.5	5.0
Merged-chr5-59532259-2	chr5	59531759	59532759	+	768.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	453743.0	NR_040683	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127111685-4	chr7	127111188	127112188	+	768.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133686, intron 1 of 3)	B1F|SINE|Alu	10341.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	1.5	1.0	0.0	0.0	1.0	0.0
Merged-chr19-32071111-3	chr19	32070617	32071617	+	768.455566	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018830, intron 2 of 23)	intron (NM_018830, intron 2 of 23)	32023.0	NM_018830	54447.0	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	0.0	2.5	0.0	1.5	6.0	0.5
Merged-chr14-75761294-3	chr14	75760778	75761778	+	768.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026232)	TTS (NM_026232)	-6785.0	NM_177381	338337.0	Mm.86507	NM_177381	ENSMUSG00000034893	Cog3	E430004N23	component of oligomeric golgi complex 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166697943-2	chr2	166697443	166698443	+	768.424988	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	15889.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59181496-4	chr4	59180982	59181982	+	768.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8068.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	15.5	7.5	22.5	21.5	5.0	15.5
Merged-chr7-126667701-3	chr7	126667198	126668198	+	768.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029339, intron 4 of 9)	L1MC4|LINE|L1	8720.0	NM_133670	20887.0	Mm.368982	NM_133670	ENSMUSG00000030711	Sult1a1	AI266890|PST|ST1A1|ST1A4|Stp|Stp1|mSTp1	sulfotransferase family 1A, phenol-preferring, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35678320-7	chr8	35677754	35678754	+	768.3809809999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081279, exon 3 of 3)	3' UTR (NM_001081279, exon 3 of 3)	-89234.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	33.5	64.0	23.0	36.5	46.0	46.5
Merged-chr18-23811994-3	chr18	23811544	23812544	+	768.377747	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	8074.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79615751-2	chr12	79615251	79616251	+	768.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	308982.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66034070-3	chr15	66033563	66034563	+	768.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152923, intron 1 of 14)	intron (NM_152923, intron 1 of 14)	-57259.0	NM_001145096	654498.0	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6071054-2	chr2	6070554	6071554	+	768.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59131.0	NM_144883	227545.0	Mm.133542	NM_144883	ENSMUSG00000045319	Proser2	5430407P10Rik|AU067770	proline and serine rich 2	protein-coding	3.5	0.0	2.5	0.0	0.0	2.0
Merged-chr5-108255463-2	chr5	108254963	108255963	+	768.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13434.0	NM_026106	13486.0	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	7.5	0.0	3.0	7.5	0.0	4.0
Merged-chr3-30875160-3	chr3	30874669	30875669	+	768.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286994, intron 1 of 3)	Lx9|LINE|L1	19219.0	NM_001286994	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60192015-3	chr10	60191509	60192509	+	768.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016803, intron 2 of 3)	intron (NM_016803, intron 2 of 3)	27251.0	NM_016803	53374.0	Mm.12866	NM_016803	ENSMUSG00000057337	Chst3	C6ST|C6ST-1|GST-0	carbohydrate (chondroitin 6/keratan) sulfotransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-75536793-3	chr17	75536283	75537283	+	768.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133747)	TTS (NM_133747)	15163.0	NM_133747	72722.0	Mm.24641	NM_133747	ENSMUSG00000002017	Fam98a	2810405J04Rik|AL024114	family with sequence similarity 98, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-118198927-3	chr12	118198428	118199428	+	768.333313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	5' UTR (NM_010060, exon 1 of 82)	5' UTR (NM_010060, exon 1 of 82)	115.0	NM_010060	13411.0	Mm.390540	NM_010060	ENSMUSG00000018581	Dnah11	Dnahc11|avc4|b2b1203Clo|b2b1279Clo|b2b1289Clo|b2b1727Clo|b2b598Clo|iv|lrd	dynein, axonemal, heavy chain 11	protein-coding	0.0	11.5	1.5	3.0	0.0	8.0
Merged-chr4-135306713-3	chr4	135306211	135307211	+	768.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-33951.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-92963714-3	chr13	92963258	92964258	+	768.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109546.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76069268-3	chr15	76068744	76069744	+	768.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133691)	TTS (NM_133691)	540.0	NM_134089	105782.0	Mm.25568	NM_134089	ENSMUSG00000022568	Scrib	AI118201|CRIB|Crc|SCRIB1|Scrb1|mKIAA0147|vartul	scribbled planar cell polarity	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-91509737-3	chr13	91509232	91510232	+	768.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 1 of 15)	intron (NM_001360776, intron 1 of 15)	48635.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	2.0	18.0	3.5	5.5	6.0	5.5
Merged-chr13-33005722-6	chr13	33005135	33006135	+	768.277771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009256, intron 1 of 6)	intron (NM_009256, intron 1 of 6)	1094.0	NM_009256	20723.0	Mm.245041	NM_009256	ENSMUSG00000045827	Serpinb9	BB283241|CAP-3|CAP3|PI-9|PI9|Spi6|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9	protein-coding	2.5	25.0	10.5	13.5	11.5	12.5
Merged-chr6-72616183-3	chr6	72615712	72616712	+	768.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009444, exon 2 of 4)	exon (NM_009444, exon 2 of 4)	536.0	NM_009444	22135.0	Mm.246563	NM_009444		Tgoln2	TGN38B|TGN41|TGN46|Ttgn2	trans-golgi network protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-87853543-2	chr10	87853041	87854041	+	768.25	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-4724.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.0	10.5	3.0	1.5	9.0	3.5
Merged-chr3-100568771-4	chr3	100568312	100569312	+	768.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010763, intron 12 of 12)	intron (NM_010763, intron 12 of 12)	-79620.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-50381768-3	chr3	50381256	50382256	+	768.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011990, intron 8 of 11)	intron (NM_011990, intron 8 of 11)	61857.0	NM_011990	26570.0	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	3.0	4.0	2.0	3.0	4.0	1.5
Merged-chr13-60735945-2	chr13	60735445	60736445	+	768.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 17 of 26)	intron (NM_134062, intron 17 of 26)	50419.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	6.0	2.0	12.5	1.0	13.0	11.0
Merged-chr2-103557296-4	chr2	103556645	103557645	+	768.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9165.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-63052208-2	chr11	63051708	63052708	+	768.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9451.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-3890073-4	chr18	3889575	3890575	+	768.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_A|LINE|L1	-275757.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69419809-3	chr12	69419305	69420305	+	768.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47655.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	0.0	0.0	3.5	0.0	0.0	2.0
Merged-chr16-91549258-3	chr16	91548756	91549756	+	768.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008338, intron 1 of 6)	IMPB_01|Satellite|Satellite	2162.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-135087935-3	chr6	135087471	135088471	+	768.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22309.0	NM_181444	232431.0	Mm.23575	NM_181444	ENSMUSG00000046733	Gprc5a	Rai3|Raig1	G protein-coupled receptor, family C, group 5, member A	protein-coding	9.0	4.5	0.0	0.5	9.5	2.5
Merged-chr1-36003981-4	chr1	36003467	36004467	+	768.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64433.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19744769-4	chr7	19744268	19745268	+	768.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008990, intron 1 of 8)	intron (NM_008990, intron 1 of 8)	4805.0	NM_008990	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-30265350-3	chr12	30264843	30265843	+	768.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324520, intron 8 of 16)	ORR1E|LTR|ERVL-MaLR	108032.0	NM_172951	268534.0	Mm.279765	NM_172951	ENSMUSG00000020672	Sntg2	2210008K22Rik|9530013L23|BB121248|G2syn|Syn5	syntrophin, gamma 2	protein-coding	3.0	1.0	4.5	10.5	8.5	11.5
Merged-chr16-26371883-3	chr16	26371359	26372359	+	768.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016674)	promoter-TSS (NM_016674)	-20.0	NM_016674	12737.0	Mm.289441	NM_016674	ENSMUSG00000022512	Cldn1	AI596271	claudin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5996098-2	chr11	5995598	5996598	+	768.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001174054, intron 5 of 20)	intron (NM_001174054, intron 5 of 20)	40340.0	NM_019661	56418.0	Mm.294821	NM_019661	ENSMUSG00000002741	Ykt6	0610042I15Rik|1810013M05Rik|AW105923	YKT6 v-SNARE homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129436901-2	chr6	129436401	129437401	+	768.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175526, intron 2 of 5)	intron (NM_175526, intron 2 of 5)	15099.0	NM_001347475	243653.0	Mm.131289	NM_175526	ENSMUSG00000033082	Clec1a	5930406N14Rik	C-type lectin domain family 1, member a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191280334-2	chr1	191279825	191280825	+	768.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	37793.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	11.0	18.5	20.0	41.5	50.0	54.0
Merged-chr12-84618008-2	chr12	84617508	84618508	+	768.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008992)	promoter-TSS (NM_008992)	-542.0	NM_008992	19300.0	Mm.229109	NM_008992	ENSMUSG00000021240	Abcd4	P69r|P70R|Pxmp1l	ATP-binding cassette, sub-family D (ALD), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107634160-4	chr9	107633665	107634665	+	768.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008138, intron 1 of 8)	intron (NM_008138, intron 1 of 8)	1177.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	20.5	60.0	41.5	30.5	66.0	66.5
Merged-chr11-96294743-3	chr11	96294217	96295217	+	768.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131758, intron 1 of 2)	intron (NR_131758, intron 1 of 2)	-4357.0	NM_008269	15414.0	Mm.215	NM_008269	ENSMUSG00000000690	Hoxb6	Hox-2.2	homeobox B6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-64070133-2	chr14	64069633	64070633	+	768.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15277.0	NM_001081063	71037.0	Mm.19977	NM_001081063	ENSMUSG00000034623	Prss55	4933401F05Rik	protease, serine 55	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65557185-4	chr9	65556682	65557682	+	768.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 5 of 5)	intron (NM_153119, intron 5 of 5)	22905.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60658280-4	chr13	60657842	60658842	+	768.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	L1_Mus1|LINE|L1	56131.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	40.0	34.5	47.5	24.0	30.0	31.0
Merged-chr2-173019442-3	chr2	173018919	173019919	+	768.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2483.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	13.5	8.5	4.5	10.5	3.5	7.5
Merged-chr11-54617835-4	chr11	54617335	54618335	+	768.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 7 of 28)	MLT1A0|LTR|ERVL-MaLR	21689.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150548289-3	chr4	150547777	150548777	+	768.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	103897.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	13.5	5.0	5.5	14.0	34.0	8.5
Merged-chr7-113759391-4	chr7	113758888	113759888	+	768.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6610.0	NM_145584	233744.0	Mm.334160	NM_145584	ENSMUSG00000038156	Spon1	AI666765|AW455831|BC020531|D330035F22Rik|FSP	spondin 1, (f-spondin) extracellular matrix protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94558032-2	chr10	94557532	94558532	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359760, intron 1 of 3)	intron (NM_001359760, intron 1 of 3)	7112.0	NM_001359760	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129307745-2	chr2	129307245	129308245	+	768.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_040371)	TTS (NR_040371)	2227.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-57765994-2	chr8	57765494	57766494	+	768.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112939.0	NM_144731	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	5.0	0.0	4.5	0.0	0.0	0.5
Merged-chr14-51771544-2	chr14	51771044	51772044	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177544, intron 1 of 1)	intron (NM_177544, intron 1 of 1)	2046.0	NM_177544	219033.0	Mm.343899	NM_177544	ENSMUSG00000060615	Ang4	Raa4|Rnase5d	angiogenin, ribonuclease A family, member 4	protein-coding	3.5	0.0	2.0	0.0	0.0	0.0
Merged-chr2-149569749-2	chr2	149569249	149570249	+	768.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	164500.0	NM_021405	58214.0	Mm.117117	NM_021405	ENSMUSG00000033156	Cst10	DD72	cystatin 10 (chondrocytes)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-63711413-2	chr18	63710913	63711913	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001014981, intron 1 of 27)	intron (NM_001014981, intron 1 of 27)	2718.0	NM_001014981	104082.0	Mm.30850	NM_001014981	ENSMUSG00000040560	Wdr7	AI462727|TRAG|mKIAA0541	WD repeat domain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180971077-2	chr1	180970577	180971577	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144794, intron 19 of 22)	B4A|SINE|B4	28559.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84513026-3	chr3	84512514	84513514	+	768.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293801, intron 6 of 7)	intron (NM_001293801, intron 6 of 7)	-32575.0	NM_001033301	229474.0	Mm.331107	NM_001033301	ENSMUSG00000041842	Fhdc1	6330505N24Rik|Gm126	FH2 domain containing 1	protein-coding	2.5	4.0	6.0	0.0	5.0	1.0
Merged-chr1-86436239-2	chr1	86435739	86436739	+	768.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	9910.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34513022-2	chr5	34512522	34513522	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139064, intron 1 of 5)	intron (NM_139064, intron 1 of 5)	957.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102295490-1	chr12	102294990	102295990	+	768.0	f1_balb.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	11849.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0.5	10.0	4.5	5.5	9.5	16.0
Merged-chr13-64424645-2	chr13	64424145	64425145	+	768.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4a1|LINE|L1	-7908.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	0.0	1.0	0.5	3.0	4.5	0.0
Merged-chr17-24453157-1	chr17	24452657	24453657	+	768.0	f1_balb.idr	intron (NR_125990, intron 1 of 13)	B1_Mus1|SINE|Alu	2235.0	NM_001301784	13560.0	Mm.163132	NM_007893	ENSMUSG00000024137	E4f1	p120E4F|phi-AP3	E4F transcription factor 1	protein-coding	2.5	16.5	0.0	0.0	2.0	3.0
Merged-chr9-65552920-2	chr9	65552420	65553420	+	768.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153119, exon 6 of 6)	3' UTR (NM_153119, exon 6 of 6)	27167.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-9544111-2	chr1	9543611	9544611	+	768.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-1297.0	NM_021511	59014.0	Mm.29061	NM_021511	ENSMUSG00000061024	Rrs1	5730466A07Rik|AA415037|D1Ertd701e|Rrr	ribosome biogenesis regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67114927-1	chr17	67114427	67115427	+	768.0	f0_balb.idr	intron (NM_001357625, intron 2 of 32)	intron (NM_001357625, intron 2 of 32)	-88692.0	NR_049205	100885844.0		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	3.5	2.5	8.0	5.5	2.5	21.5
Merged-chr4-129292992-2	chr4	129292492	129293492	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023485, intron 1 of 4)	ORR1B1|LTR|ERVL-MaLR	5371.0	NM_023485	68828.0	Mm.132243	NM_023485	ENSMUSG00000001333	Sync	1110057H03Rik|SNIP4	syncoilin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87030542-2	chr11	87030042	87031042	+	768.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30D2_MM|LTR|ERV1	-36780.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111054059-1	chr9	111053559	111054559	+	768.0	f0_balb.idr	TTS (NM_001302376)	TTS (NM_001302376)	3185.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43513101-3	chr19	43512616	43513616	+	768.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010324, intron 2 of 8)	B1_Mus1|SINE|Alu	11489.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	202.0	424.0	339.0	151.5	353.5	258.5
Merged-chr12-73438839-2	chr12	73438339	73439339	+	768.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29276.0	NR_046013	380765.0	Mm.490476	NR_046013	ENSMUSG00000056359	D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	9.0	0.0	1.0	24.5	0.0	1.5
Merged-chr8-11217230-2	chr8	11216730	11217730	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009931, intron 39 of 51)	intron (NM_009931, intron 39 of 51)	-95575.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65844733-1	chr17	65844233	65845233	+	768.0	f1_balb.idr	Intergenic	Intergenic	40190.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	2.0	5.0	0.5	0.5	5.5	2.5
Merged-chr1-74193605-2	chr1	74193105	74194105	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178241, intron 1 of 1)	intron (NM_178241, intron 1 of 1)	1026.0	NM_178241	227288.0	Mm.337035	NM_178241	ENSMUSG00000048480	Cxcr1	Il8ra	chemokine (C-X-C motif) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124003382-2	chr5	124002882	124003882	+	768.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145070)	TTS (NM_145070)	6530.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123481888-2	chr4	123481388	123482388	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 34 of 92)	intron (NM_001199137, intron 34 of 92)	-69977.0	NM_001167918	442834.0	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0.0	0.0	0.5	0.0	0.5	0.5
Merged-chr5-121585752-2	chr5	121585252	121586252	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009656, intron 1 of 12)	intron (NM_009656, intron 1 of 12)	8072.0	NM_009656	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-56717372-2	chr6	56716872	56717872	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030235, intron 1 of 15)	intron (NM_030235, intron 1 of 15)	2467.0	NM_030235	78937.0	Mm.105343	NM_030235	ENSMUSG00000029787	Avl9	5830411G16Rik|D730049P16Rik|mKIAA0241	AVL9 cell migration associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47255276-2	chr17	47254781	47255781	+	768.0	f0_balb.idr|f1_balb.idr	intron (NM_001097623, intron 4 of 19)	intron (NM_001097623, intron 4 of 19)	25051.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	4.0	14.0	17.5	17.0	42.5	18.0
Merged-chr11-69017250-2	chr11	69016750	69017750	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281465, intron 1 of 22)	intron (NM_001281465, intron 1 of 22)	1339.0	NM_001013256	68964.0	Mm.285785	NM_001013256	ENSMUSG00000020898	Ctc1	1500010J02Rik|AAF-132|AAF132	CTS telomere maintenance complex component 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118862638-2	chr9	118862138	118863138	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 9 of 13)	intron (NM_001113514, intron 9 of 13)	-63898.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0.0	0.0	2.5	2.5	1.0	0.5
Merged-chr7-83604969-2	chr7	83604469	83605469	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177695, intron 11 of 22)	intron (NM_177695, intron 11 of 22)	20038.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	0.0	0.0	0.5	0.0	6.5	0.0
Merged-chr6-42387871-2	chr6	42387371	42388371	+	768.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12367.0	NM_001001452	387514.0	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17497259-2	chr6	17496759	17497759	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008591, intron 3 of 21)	intron (NM_008591, intron 3 of 21)	33302.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149701034-2	chr4	149700587	149701587	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029837, intron 1 of 23)	MTC-int|LTR|ERVL-MaLR	542.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	71.0	170.0	126.0	39.5	157.5	86.0
Merged-chr8-84233804-2	chr8	84233295	84234295	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172503, intron 2 of 13)	L1MA4|LINE|L1	3247.0	NM_172503	212168.0	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	0.0	1.5	4.5	7.0	1.0	4.0
Merged-chr4-126428585-3	chr4	126428111	126429111	+	768.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153402, intron 1 of 18)	(T)n|Simple_repeat|Simple_repeat	931.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122108482-2	chr14	122107982	122108982	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080556, intron 1 of 16)	intron (NM_080556, intron 1 of 16)	1400.0	NM_080556	68059.0	Mm.275191	NM_080556	ENSMUSG00000025544	Tm9sf2	1500001N15Rik|AA536814|D14Ertd64e|P76	transmembrane 9 superfamily member 2	protein-coding	0.0	24.0	12.0	5.0	23.5	19.0
Merged-chr5-24485221-2	chr5	24484721	24485721	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359881, intron 9 of 15)	CpG	33044.0	NM_139153	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34905570-1	chr6	34905070	34906070	+	768.0	f0_balb.idr	exon (NM_001013366, exon 5 of 15)	exon (NM_001013366, exon 5 of 15)	5261.0	NM_001013366	101240.0	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-68380806-2	chr2	68380306	68381306	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 5 of 17)	intron (NM_016866, intron 5 of 17)	91175.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128497304-2	chr10	128496804	128497804	+	768.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172259, exon 2 of 7)	exon (NM_172259, exon 2 of 7)	1381.0	NM_172259	216459.0	Mm.291688	NM_172259	ENSMUSG00000039824	Myl6b	5730437E04Rik|BC037527|MLC1SA	myosin, light polypeptide 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-37185640-2	chr17	37185140	37186140	+	768.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8252.0	NM_023137	24108.0	Mm.140210	NM_023137	ENSMUSG00000035186	Ubd	FAT10	ubiquitin D	protein-coding	7.0	0.0	0.0	0.0	7.0	0.5
Merged-chr5-93120622-3	chr5	93120139	93121139	+	768.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009818, intron 1 of 9)	intron (NM_001009818, intron 1 of 9)	27223.0	NM_001347377	52398.0	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	0.0	6.0	2.0	0.0	6.5	0.5
Merged-chr2-120568865-2	chr2	120568365	120569365	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009222, intron 1 of 7)	PB1D9|SINE|Alu	1194.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	9.0	11.0	27.0	10.0	11.0	29.5
Merged-chr5-34139883-2	chr5	34139383	34140383	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289803, intron 2 of 23)	intron (NM_001289803, intron 2 of 23)	21143.0	NR_040703	75357.0	Mm.410806	NR_040703	ENSMUSG00000106902	4930557J02Rik	-	RIKEN cDNA 4930557J02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-52101434-2	chr11	52100934	52101934	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019411, intron 1 of 6)	RSINE1|SINE|B4	2610.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-66121763-3	chr17	66121215	66122215	+	768.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1805.0	NM_001003919	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-81541260-2	chr18	81540760	81541760	+	768.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	450820.0	NR_039589	100628596.0		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108395811-1	chr6	108395311	108396311	+	768.0	f1_balb.idr	intron (NM_010585, intron 29 of 61)	intron (NM_010585, intron 29 of 61)	-93932.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	6.5	2.0	6.5	1.0	7.0	10.0
Merged-chr13-10071391-2	chr13	10070891	10071891	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 3 of 4)	intron (NM_033269, intron 3 of 4)	289412.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19222347-1	chr7	19221847	19222847	+	768.0	f1_c57bl6.idr	exon (NM_175668, exon 2 of 2)	exon (NM_175668, exon 2 of 2)	-6042.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	0.0	1.0	6.5	2.5	7.5	1.0
Merged-chr5-143546686-2	chr5	143546186	143547186	+	768.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2020.0	NM_133703	67238.0	Mm.383219	NM_026050	ENSMUSG00000083012	Fam220a	1500026F15Rik|2810453I06Rik|AW047776|Acpin1|Sipar	family with sequence similarity 220, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-56615264-4	chr8	56614751	56615751	+	767.983337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64117.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	1.0	1.0	0.0	0.0	1.0	0.5
Merged-chr7-89356511-2	chr7	89356011	89357011	+	767.958374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 1 of 14)	intron (NM_001360746, intron 1 of 14)	-17724.0	NM_001360745	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29986819-4	chr17	29986355	29987355	+	767.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18184.0	NM_148926	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0.0	7.5	6.5	0.5	2.5	2.0
Merged-chr2-131088685-4	chr2	131088292	131089292	+	767.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2027.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	78.5	152.5	97.5	52.0	154.0	138.0
Merged-chr12-105795093-3	chr12	105794590	105795590	+	767.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011112, intron 1 of 21)	intron (NM_011112, intron 1 of 21)	10393.0	NM_001347440	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	1.0	9.0	6.5	3.5	14.0	1.5
Merged-chr3-97294941-3	chr3	97294458	97295458	+	767.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67594.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70007154-3	chr9	70006653	70007653	+	767.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016787, exon 11 of 11)	3' UTR (NM_016787, exon 11 of 11)	-5395.0	NM_001282084	235459.0	Mm.293117	NM_199151	ENSMUSG00000033543	Gtf2a2	TFIIA-gamma|TfIIg|Tfiia2	general transcription factor II A, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40241598-4	chr9	40241101	40242101	+	767.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27615.0	NM_001083917	235281.0	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94692681-4	chr11	94692145	94693145	+	767.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	11854.0	NM_001007584	432589.0	Mm.342314	NM_001007584	ENSMUSG00000056008	Gm11541	-	predicted gene 11541	protein-coding	0.0	1.0	1.0	0.0	1.0	1.0
Merged-chr18-5141542-3	chr18	5141043	5142043	+	767.9111330000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24188.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13163976-4	chr8	13163487	13164487	+	767.895813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010684, intron 1 of 8)	MTC|LTR|ERVL-MaLR	4826.0	NM_010684	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21240971-3	chr11	21240466	21241466	+	767.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290628, intron 1 of 22)	intron (NM_001290628, intron 1 of 22)	1934.0	NM_001290628	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	45.0	127.5	68.5	28.5	67.0	40.0
Merged-chr4-123423547-3	chr4	123423040	123424040	+	767.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 52 of 92)	intron (NM_001199137, intron 52 of 92)	-11629.0	NM_001167918	442834.0	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148536360-3	chr5	148535856	148536856	+	767.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	15317.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121705307-4	chr11	121704777	121705777	+	767.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144797, intron 1 of 3)	intron (NM_144797, intron 1 of 3)	2850.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167357078-4	chr2	167356572	167357572	+	767.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7894.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88260454-6	chr1	88259875	88260875	+	767.87146	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_198652, exon 8 of 8)	3' UTR (NM_198652, exon 8 of 8)	9033.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48278552-2	chr17	48278034	48279034	+	767.833374	f0_balb.idr|f1_balb.idr	Intergenic	RMER6A|LTR|ERVK	14239.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	3.5	16.5	14.0	6.5	17.5	11.0
Merged-chr4-8699837-2	chr4	8699337	8700337	+	767.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277149, intron 1 of 37)	RSINE1|SINE|B4	9431.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80865044-4	chr7	80864583	80865583	+	767.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009553, intron 2 of 2)	intron (NM_009553, intron 2 of 2)	2975.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3225348-2	chr8	3224848	3225848	+	767.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330056, intron 2 of 21)	intron (NM_001330056, intron 2 of 21)	54269.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0.0	3.5	8.5	0.5	2.5	0.0
Merged-chr15-58877075-2	chr15	58876575	58877575	+	767.833313	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026642)	TTS (NM_026642)	4426.0	NM_026642	68260.0	Mm.278805	NM_026642	ENSMUSG00000037085	Trmt12	4632406N01Rik|AI449275|Tyw2	tRNA methyltranferase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117374008-4	chr2	117373512	117374512	+	767.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31135.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	19.5	44.0	22.5	6.5	43.0	41.5
Merged-chr15-88921641-4	chr15	88921100	88922100	+	767.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357736, intron 8 of 11)	intron (NM_001357736, intron 8 of 11)	32818.0	NM_001357736	239591.0	Mm.86807	NM_172818	ENSMUSG00000022388	Ttll8	1700019P01Rik|4933401B17	tubulin tyrosine ligase-like family, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121599484-3	chr10	121598950	121599950	+	767.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359618, intron 22 of 24)	intron (NM_001359618, intron 22 of 24)	-12656.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	11.0	12.0	20.0	4.0	0.0	4.0
Merged-chr19-21894873-3	chr19	21894339	21895339	+	767.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	116499.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	7.5	2.0	6.5	2.5	2.5	1.0
Merged-chr8-11183765-2	chr8	11183265	11184265	+	767.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-129040.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68013340-4	chr10	68012815	68013815	+	767.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359319, intron 6 of 11)	intron (NM_001359319, intron 6 of 11)	33745.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	0.5	1.5	0.5	0.5	0.5	0.0
Merged-chr16-36473667-2	chr16	36473167	36474167	+	767.8000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-18275.0	NM_025288	20863.0	Mm.136573	NM_025288	ENSMUSG00000054905	Stfa3	Stf3	stefin A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35968642-2	chr17	35968142	35969142	+	767.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_013854, intron 1 of 22)	B1_Mus1|SINE|Alu	1108.0	NM_013854	224742.0	Mm.329022	NM_013854	ENSMUSG00000038762	Abcf1	AU041969|Abc50|D17Wsu166e|GCN20	ATP-binding cassette, sub-family F (GCN20), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128240519-2	chr7	128240019	128241019	+	767.785767	f1_balb.idr|f1_c57bl6.idr	exon (NM_146205, exon 3 of 6)	exon (NM_146205, exon 3 of 6)	-2488.0	NM_177001	100043133.0	Mm.183647	NM_177001	ENSMUSG00000062944	9130023H24Rik	GLI4	RIKEN cDNA 9130023H24 gene	protein-coding	1.5	0.0	0.0	0.0	0.0	0.5
Merged-chr9-5333619-3	chr9	5333093	5334093	+	767.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007609, intron 7 of 8)	ORR1A4-int|LTR|ERVL-MaLR	-11883.0	NM_009808	12364.0	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3328025-3	chr8	3327527	3328527	+	767.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25388.0	NM_001033378	319493.0	Mm.234565	NM_001033378	ENSMUSG00000074497	A430078G23Rik	-	RIKEN cDNA A430078G23 gene	protein-coding	2.5	3.0	5.0	0.5	0.0	5.0
Merged-chr4-142054235-3	chr4	142053737	142054737	+	767.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	ID_B1|SINE|B4	-30061.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125273265-2	chr5	125272765	125273765	+	767.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67829.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4476571-4	chr12	4476028	4477028	+	767.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010881, intron 1 of 22)	intron (NM_010881, intron 1 of 22)	654.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134374127-4	chr5	134373614	134374614	+	767.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081462, intron 22 of 29)	intron (NM_001081462, intron 22 of 29)	47660.0	NR_039544	100628570.0		NR_039544	ENSMUSG00000093311	Mir3965	mmu-mir-3965|mu-mir-3965	microRNA 3965	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-130061361-2	chr3	130060861	130061861	+	767.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207209)	promoter-TSS (NM_207209)	-454.0	NM_207209	99683.0	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133449915-2	chr4	133449419	133450419	+	767.75	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-30214.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	0.0	3.5	0.0	0.0	9.0	0.0
Merged-chr18-38186850-2	chr18	38186350	38187350	+	767.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22912.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75228394-2	chr10	75227894	75228894	+	767.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145826, intron 2 of 18)	ORR1D1|LTR|ERVL-MaLR	16004.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9981488-2	chr19	9980988	9981988	+	767.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_073181, intron 1 of 4)	B1F|SINE|Alu	888.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47276893-2	chr19	47276393	47277393	+	767.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 11 of 14)	intron (NM_008018, intron 11 of 14)	-3304.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	2.0	10.0	3.5	6.0	3.5	0.0
Merged-chr7-110708158-2	chr7	110707658	110708658	+	767.700012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60048.0	NM_001276301	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-151920434-3	chr4	151919938	151920938	+	767.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13282.0	NM_172704	230935.0	Mm.21353	NM_172704	ENSMUSG00000039768	Dnajc11	E030019A03Rik	DnaJ heat shock protein family (Hsp40) member C11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121781955-3	chr11	121781439	121782439	+	767.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48279.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113017674-3	chr6	113017165	113018165	+	767.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28637.0	NM_001355266	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24361011-3	chr16	24360455	24361455	+	767.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32395.0	NM_178665	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-74825279-1	chr9	74824779	74825779	+	767.666687	f0_balb.idr	Intergenic	Intergenic	-23158.0	NR_045284	100503019.0	Mm.482658	NR_045284	ENSMUSG00000066477	Gm16551	-	predicted gene 16551	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153076740-2	chr2	153076240	153077240	+	767.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145536, intron 6 of 8)	(CA)n|Simple_repeat|Simple_repeat	10785.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	6.5	22.0	14.0	9.5	31.0	8.0
Merged-chr6-71196287-4	chr6	71195775	71196775	+	767.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3604.0	NM_017399	14080.0	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40147693-4	chr4	40147207	40148207	+	767.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007386, intron 1 of 20)	ORR1C1|LTR|ERVL-MaLR	4442.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54427928-5	chr11	54427546	54428546	+	767.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-10133.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-82554563-2	chr1	82554063	82555063	+	767.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007735, intron 4 of 47)	intron (NM_007735, intron 4 of 47)	32286.0	NM_007735	12829.0	Mm.40253	NM_007735	ENSMUSG00000067158	Col4a4	E130010M05Rik|[a]4(IV)	collagen, type IV, alpha 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77518050-2	chr10	77517550	77518550	+	767.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2237.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19469879-2	chr7	19469379	19470379	+	767.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-11385.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	5.0	1.5	1.5	5.0	1.5	1.5
Merged-chr12-98350366-2	chr12	98349866	98350866	+	767.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	81731.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-115036527-3	chr7	115036031	115037031	+	767.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	85257.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	0.0	0.0	0.0	4.5	0.0	7.5
Merged-chr11-51262475-1	chr11	51261975	51262975	+	767.5	f0_balb.idr	promoter-TSS (NM_007714)	promoter-TSS (NM_007714)	582.0	NM_001358282	193286.0	Mm.80975	NM_177567	ENSMUSG00000045942	BC049762	4930503F14	cDNA sequence BC049762	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-33818191-2	chr5	33817691	33818691	+	767.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24921.0	NM_175231	107823.0	Mm.19892	NM_175231	ENSMUSG00000057406	Nsd2	5830445G22Rik|9430010A17Rik|AW555663|C130020C13Rik|D030027O06Rik|D930023B08Rik|MMSET|Whsc1|Whsc1l|mKIAA1090	nuclear receptor binding SET domain protein 2	protein-coding	0.0	3.0	1.5	1.0	6.0	3.0
Merged-chr10-81487166-2	chr10	81486666	81487666	+	767.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_134009, exon 14 of 14)	3' UTR (NM_134009, exon 14 of 14)	-4457.0	NM_001311124	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105253310-2	chr4	105252810	105253810	+	767.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95963.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	4.0	9.5	6.0	0.0	0.0	0.0
Merged-chr11-79531644-2	chr11	79531134	79532134	+	767.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010897, intron 36 of 57)	Lx5c|LINE|L1	-1025.0	NM_010161	14017.0	Mm.439665	NM_010161	ENSMUSG00000078771	Evi2a	AW491894|Evi-2|Evi2	ecotropic viral integration site 2a	protein-coding	0.0	1.5	15.0	1.5	1.5	3.0
Merged-chr17-28927368-2	chr17	28926868	28927868	+	767.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12044.0	NM_172450	207819.0	Mm.248931	NM_172450	ENSMUSG00000048905	4930539E08Rik	9130014G02	RIKEN cDNA 4930539E08 gene	protein-coding	0.0	0.0	0.0	0.0	1.5	0.0
Merged-chr3-8970795-2	chr3	8970295	8971295	+	767.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-6649.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	9.0	14.5	8.0	2.5	6.0	20.0
Merged-chr10-76443916-2	chr10	76443416	76444416	+	767.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1004.0	NM_001282992	18541.0	Mm.251794	NM_008787	ENSMUSG00000001151	Pcnt	AW476095|C86676|KEN|Pcnt2|kendrin|m239Asp|m275Asp	pericentrin (kendrin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108630907-2	chr6	108630407	108631407	+	767.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_104577, intron 1 of 6)	ORR1D2|LTR|ERVL-MaLR	-7740.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111674804-2	chr12	111674303	111675303	+	767.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-2465.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26915576-2	chr2	26915076	26916076	+	767.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013678)	promoter-TSS (NM_013678)	-845.0	NM_013678	20931.0	Mm.389260	NM_013678	ENSMUSG00000014873	Surf2	Surf-2	surfeit gene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-105139962-1	chr13	105139462	105140462	+	767.5	f0_balb.idr	intron (NM_001360891, intron 7 of 7)	intron (NM_001360891, intron 7 of 7)	57840.0	NM_025751	66763.0	Mm.109093	NM_025751	ENSMUSG00000021718	4933425L06Rik	-	RIKEN cDNA 4933425L06 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98053879-2	chr7	98053379	98054379	+	767.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001256082, exon 46 of 49)	exon (NM_001256082, exon 46 of 49)	55369.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	1.5	5.5	3.0	1.0	13.0	8.5
Merged-chr12-16719105-2	chr12	16718640	16719640	+	767.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015764, intron 9 of 34)	intron (NM_015764, intron 9 of 34)	38099.0	NM_001252071	268527.0	Mm.428062	NM_015764	ENSMUSG00000036523	Greb1	5730583K22Rik|9130004E13|AF180470|AU023194|mKIAA0575	gene regulated by estrogen in breast cancer protein	protein-coding	3.5	0.0	1.0	0.5	5.5	4.0
Merged-chr5-66005942-2	chr5	66005442	66006442	+	767.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-1657.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-51974495-2	chr15	51973995	51974995	+	767.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009009, intron 4 of 13)	B1_Mur2|SINE|Alu	17265.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72356724-2	chr6	72356224	72357224	+	767.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_144916, exon 3 of 8)	exon (NM_144916, exon 3 of 8)	1241.0	NM_144916	232086.0	Mm.491165	NM_144916	ENSMUSG00000055912	Tmem150a	BC014685|Tmem150	transmembrane protein 150A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37014468-3	chr10	37013971	37014971	+	767.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39927.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64722208-2	chr17	64721708	64722708	+	767.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 16 of 21)	intron (NM_008549, intron 16 of 21)	-44903.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124821002-2	chr6	124820502	124821502	+	767.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013700, intron 11 of 19)	intron (NM_013700, intron 11 of 19)	-6706.0	NM_009415	21991.0	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|TIM|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52922790-2	chr2	52922290	52923290	+	767.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	64922.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-35373318-2	chr15	35372818	35373818	+	767.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177151, intron 2 of 61)	(TCC)n|Simple_repeat|Simple_repeat	1772.0	NM_177151	666173.0	Mm.309250	NM_177151	ENSMUSG00000037646	Vps13b	1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|mKIAA0532|mKIAA5032	vacuolar protein sorting 13B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46740182-2	chr18	46739682	46740682	+	767.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026217, intron 1 of 3)	intron (NM_026217, intron 1 of 3)	1397.0	NM_026217	67526.0	Mm.9852	NM_026217	ENSMUSG00000032905	Atg12	4931423H11Rik|A330058M13Rik|Apg12l|Atg12l	autophagy related 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103465324-2	chr14	103464824	103465824	+	767.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-48017.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31128034-3	chr2	31127489	31128489	+	767.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 1 of 15)	RMER17C|LTR|ERVK	14019.0	NM_001355106	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21243459-2	chr9	21242959	21243959	+	767.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_053190, exon 3 of 3)	3' UTR (NM_053190, exon 3 of 3)	-4127.0	NM_001110306	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-40167949-2	chr15	40167449	40168449	+	767.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_155350, exon 3 of 3)	non-coding (NR_155350, exon 3 of 3)	5342.0	NR_155349	102636151.0	Mm.321976	NR_155349	ENSMUSG00000115367	Gm33301	-	predicted gene, 33301	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101835404-2	chr5	101834904	101835904	+	767.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172882, exon 67 of 67)	3' UTR (NM_172882, exon 67 of 67)	70274.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-73771469-2	chr16	73770969	73771969	+	767.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	570598.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83549602-2	chr17	83549102	83550102	+	767.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35269.0	NM_001159529	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98850417-2	chr15	98849917	98850917	+	767.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033276, exon 35 of 55)	exon (NM_001033276, exon 35 of 55)	-18909.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3842497-2	chr19	3841997	3842997	+	767.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9276.0	NM_001271496	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3290911-2	chr7	3290411	3291411	+	767.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001093765, intron 1 of 2)	intron (NM_001093765, intron 1 of 2)	355.0	NM_001093765	50918.0	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	13.0	28.5	21.0	3.5	7.0	0.5
Merged-chr10-51524981-2	chr10	51524481	51525481	+	767.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34083.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26921959-2	chr2	26921459	26922459	+	767.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011512, exon 6 of 6)	exon (NM_011512, exon 6 of 6)	-5429.0	NM_013677	20930.0	Mm.347512	NM_013677	ENSMUSG00000015790	Surf1	0610010F23Rik|Surf-1	surfeit gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80074337-4	chr10	80073853	80074853	+	767.479187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359635, intron 4 of 31)	intron (NM_001359635, intron 4 of 31)	1086.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100298439-3	chr11	100297937	100298937	+	767.472229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21512.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77596565-4	chr9	77596064	77597064	+	767.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40168.0	NM_172925	244923.0	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	0.0	3.0	0.0	0.0	7.0	0.0
Merged-chr19-38043897-3	chr19	38043389	38044389	+	767.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001099634)	promoter-TSS (NM_001099634)	-312.0	NM_001302140	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	11.0	12.5	15.5	21.0	27.5	17.0
Merged-chr14-55105744-4	chr14	55105216	55106216	+	767.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007455, intron 2 of 21)	PB1D9|SINE|Alu	877.0	NM_001303502	11766.0	Mm.238879	NM_007455	ENSMUSG00000040701	Ap1g2	Adtg2|G2ad	adaptor protein complex AP-1, gamma 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23880632-2	chr18	23880132	23881132	+	767.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 6 of 7)	intron (NM_001162941, intron 6 of 7)	-74056.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8279489-3	chr15	8279019	8280019	+	767.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110413.0	NM_001162906	73692.0	Mm.164436	NM_001162906	ENSMUSG00000039801	2410089E03Rik	4732468D17Rik|Hug|Jbts17|b2b012Clo	RIKEN cDNA 2410089E03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91408781-2	chr16	91408281	91409281	+	767.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_008349, intron 2 of 6)	MTEb|LTR|ERVL-MaLR	2546.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95321026-2	chr8	95320526	95321526	+	767.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_199455, intron 7 of 7)	intron (NM_199455, intron 7 of 7)	9428.0	NM_199455	73407.0	Mm.472783	NM_028532	ENSMUSG00000090206	Tepp	1700055M20Rik	testis, prostate and placenta expressed	protein-coding	0.0	0.0	4.0	0.0	0.0	0.5
Merged-chr16-3956635-3	chr16	3956129	3957129	+	767.355591	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081280, intron 7 of 17)	RMER19B|LTR|ERVK	20003.0	NM_175547	268857.0	Mm.215994	NM_175547	ENSMUSG00000049871	Nlrc3	CLR16.2|D230007K08Rik|mFLJ00348	NLR family, CARD domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122919652-3	chr7	122919148	122920148	+	767.344421	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50811.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128060953-2	chr10	128060453	128061453	+	767.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019766, intron 1 of 7)	intron (NM_019766, intron 1 of 7)	1971.0	NM_019766	56351.0	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-104444945-4	chr2	104444463	104445463	+	767.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010434, intron 3 of 15)	intron (NM_010434, intron 3 of 15)	-16023.0	NR_035432	100316678.0		NR_035432	ENSMUSG00000084516	Mir1902	Mirn1902|mmu-mir-1902	microRNA 1902	ncRNA	0.0	2.5	4.5	3.0	3.0	3.5
Merged-chr18-31894984-3	chr18	31894497	31895497	+	767.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028866, intron 17 of 21)	intron (NM_028866, intron 17 of 21)	16906.0	NM_026006	67158.0	Mm.31537	NM_026006	ENSMUSG00000044982	Sft2d3	2610206C24Rik|AI847965|AW046173	SFT2 domain containing 3	protein-coding	3.5	5.5	1.5	0.0	2.0	1.0
Merged-chr1-180407333-3	chr1	180406828	180407828	+	767.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	76176.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48323308-4	chr17	48322794	48323794	+	767.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177083, intron 5 of 5)	PB1D11|SINE|Alu	7132.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102577729-7	chr4	102577276	102578276	+	767.273804	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	7716.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	1.5	5.5	10.0	7.5	22.0	9.5
Merged-chr5-138228270-2	chr5	138227770	138228770	+	767.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013773, intron 1 of 5)	B3|SINE|B2	2366.0	NM_001013773	381680.0	Mm.156846	NM_001013773	ENSMUSG00000047592	Nxpe5	-	neurexophilin and PC-esterase domain family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130738742-4	chr4	130738243	130739243	+	767.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356564, intron 7 of 20)	intron (NM_001356564, intron 7 of 20)	-10895.0	NR_028565	100217460.0		NR_028565	ENSMUSG00000065196	Snord85	MBII-251|Z50	small nucleolar RNA, C/D box 85	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73608989-2	chr7	73608480	73609480	+	767.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50585.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	11.5	30.0	8.0	4.0	15.0	11.5
Merged-chr12-32131384-3	chr12	32130827	32131827	+	767.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70048.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	0.0	0.5	0.5	0.0	0.5	0.5
Merged-chr1-171130733-2	chr1	171130233	171131233	+	767.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_025321, intron 5 of 5)	ID_B1|SINE|B4	9072.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61430537-2	chr9	61430037	61431037	+	767.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58171.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-39638046-4	chr8	39637506	39638506	+	767.224976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113326, intron 1 of 9)	intron (NM_001113326, intron 1 of 9)	4672.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	2.0	22.0	24.0	11.0	13.5	19.0
Merged-chr4-150099050-3	chr4	150098548	150099548	+	767.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177366, intron 2 of 3)	intron (NM_177366, intron 2 of 3)	11545.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	5.5	6.0	3.0	2.0	3.0	0.0
Merged-chr12-81833262-3	chr12	81832753	81833753	+	767.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-26777.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126802892-6	chr8	126802396	126803396	+	767.211121	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46124.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34283881-2	chr17	34283450	34284450	+	767.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_010378, intron 2 of 4)	intron (NM_010378, intron 2 of 4)	3821.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	18.5	51.0	12.0	5.0	18.0	9.0
Merged-chr19-21051116-3	chr19	21050623	21051623	+	767.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53587.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50027643-2	chr11	50027143	50028143	+	767.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 1 of 7)	intron (NM_001290750, intron 1 of 7)	2312.0	NM_001290750	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166082239-5	chr2	166081645	166082645	+	767.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252579, intron 11 of 20)	intron (NM_001252579, intron 11 of 20)	73140.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	3.0	0.0	0.0	0.0	5.5	1.0
Merged-chr4-120104793-3	chr4	120104293	120105293	+	767.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 5 of 8)	intron (NM_010657, intron 5 of 8)	-56413.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0.0	3.0	4.0	0.0	2.0	4.5
Merged-chr2-167420833-4	chr2	167420348	167421348	+	767.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148929)	promoter-TSS (NM_148929)	-862.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-67129143-3	chr6	67128525	67129525	+	767.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91618.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94676704-3	chr11	94676225	94677225	+	767.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145828, intron 1 of 10)	intron (NM_145828, intron 1 of 10)	768.0	NM_145828	217119.0	Mm.100638	NM_145828	ENSMUSG00000020868	Xylt2	E030002B02Rik|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107473731-2	chr11	107473231	107474231	+	767.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-3011.0	NM_145823	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118682869-2	chr9	118682387	118683387	+	767.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 13 of 27)	intron (NM_133721, intron 13 of 27)	-28805.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	13.5	14.5	8.0	4.0	10.5	8.5
Merged-chr12-108939235-2	chr12	108938735	108939735	+	767.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	44963.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35247043-3	chr17	35246586	35247586	+	767.133301	f1_balb.idr|f1_c57bl6.idr	exon (NM_001252457, exon 5 of 11)	exon (NM_001252457, exon 5 of 11)	3011.0	NR_105941	102465589.0		NR_105941	ENSMUSG00000098499	Mir6975	Gm27693|mmu-mir-6975	microRNA 6975	ncRNA	0.0	3.5	6.5	3.0	4.0	5.0
Merged-chr18-61098345-4	chr18	61097861	61098861	+	767.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME3B|LINE|L1	-7211.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-54979540-2	chr1	54979118	54980118	+	767.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47860.0	NM_031179	81898.0	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	3.0	0.5	0.0	0.0	0.0	5.0
Merged-chr1-75559719-3	chr1	75559216	75560216	+	767.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009208)	TTS (NM_009208)	13254.0	NM_001357150	20536.0	Mm.5053	NM_009208	ENSMUSG00000006576	Slc4a3	A930038D23Rik|Ae3	solute carrier family 4 (anion exchanger), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32591234-3	chr2	32590720	32591720	+	767.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011373, intron 2 of 4)	B2_Mm2|SINE|B2	4142.0	NM_011373	20448.0	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113609514-3	chr13	113609011	113610011	+	767.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	L2a|LINE|L2	9053.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83164829-1	chr8	83164329	83165329	+	767.0	f1_c57bl6.idr	promoter-TSS (NM_027758)	promoter-TSS (NM_027758)	-523.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	54.5	141.0	69.5	82.0	107.5	64.0
Merged-chr9-63568501-2	chr9	63568001	63569001	+	767.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030068, intron 5 of 21)	intron (NM_030068, intron 5 of 21)	33992.0	NM_030068	78250.0	Mm.444612	NM_030068	ENSMUSG00000037801	Iqch	4921504K03Rik	IQ motif containing H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-37873366-2	chr6	37872866	37873866	+	767.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145076, intron 1 of 18)	intron (NM_145076, intron 1 of 18)	2555.0	NM_145076	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78489816-2	chr9	78489316	78490316	+	767.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8092.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131135306-1	chr1	131134806	131135806	+	767.0	f0_balb.idr	intron (NM_145508, intron 2 of 2)	intron (NM_145508, intron 2 of 2)	2928.0	NM_145508	226419.0	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126884102-2	chr7	126883602	126884602	+	767.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001163775, exon 1 of 16)	5' UTR (NM_001163775, exon 1 of 16)	865.0	NM_001163775	381921.0	Mm.259634	NM_001163774	ENSMUSG00000059981	Taok2	1110033K02Rik|B230344N16|MAP3K17|PSK|PSK1|TAO1|TAO2|mKIAA0881	TAO kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24422846-2	chr5	24422346	24423346	+	767.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007668, exon 2 of 12)	exon (NM_007668, exon 2 of 12)	684.0	NM_007668	12568.0	Mm.298798	NM_007668	ENSMUSG00000028969	Cdk5	AW048668|Crk6	cyclin-dependent kinase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34610666-3	chr6	34610231	34611231	+	767.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 1 of 13)	MER94|DNA|hAT-Blackjack	12227.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	28.0	8.5	21.0	13.0	4.5	10.0
Merged-chr11-98029696-2	chr11	98029196	98030196	+	767.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009078, intron 4 of 5)	intron (NM_009078, intron 4 of 5)	2772.0	NM_009078	19921.0	Mm.10247	NM_009078	ENSMUSG00000017404	Rpl19	-	ribosomal protein L19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134344156-2	chr5	134343656	134344656	+	767.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	17702.0	NR_039544	100628570.0		NR_039544	ENSMUSG00000093311	Mir3965	mmu-mir-3965|mu-mir-3965	microRNA 3965	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47271783-1	chr19	47271283	47272283	+	767.0	f1_balb.idr	intron (NM_008018, intron 13 of 14)	intron (NM_008018, intron 13 of 14)	1806.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	0.0	0.5	1.0	1.5	1.0	0.0
Merged-chr8-82372399-1	chr8	82371899	82372899	+	767.0	f1_balb.idr	intron (NM_008357, intron 2 of 7)	PB1D7|SINE|Alu	30187.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	30.5	53.5	35.0	20.5	55.0	61.5
Merged-chr7-66199487-2	chr7	66198987	66199987	+	767.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89972.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-36855803-2	chr6	36855303	36856303	+	767.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 30 of 32)	Lx4B|LINE|L1	-45624.0	NM_008973	19242.0	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99384305-1	chr9	99383805	99384805	+	767.0	f0_balb.idr	Intergenic	Intergenic	-25775.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-65101179-2	chr14	65100679	65101679	+	767.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3073.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137371913-1	chr4	137371413	137372413	+	767.0	f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-14154.0	NM_001243769	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	0.0	17.5	19.5	1.5	16.5	11.0
Merged-chr15-25805465-2	chr15	25804965	25805965	+	767.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001353142, intron 15 of 20)	intron (NM_001353142, intron 15 of 20)	31452.0	NM_001353141	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-126630799-1	chr3	126630299	126631299	+	767.0	f1_balb.idr	intron (NM_001025438, intron 2 of 18)	L1ME2|LINE|L1	33848.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	73.5	148.0	136.0	58.5	119.5	67.5
Merged-chr19-44265523-2	chr19	44264988	44265988	+	767.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28188.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	3.0	21.0	23.5	1.5	7.0	12.5
Merged-chr6-113493901-2	chr6	113493401	113494401	+	767.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133930)	TTS (NM_133930)	7917.0	NM_172487	210673.0	Mm.133060	NM_172487	ENSMUSG00000045009	Prrt3	6330505P20|B230206N24Rik	proline-rich transmembrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20434229-1	chr11	20433729	20434729	+	767.0	f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	-101516.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	0.0	3.0	1.5	4.0	3.0	1.0
Merged-chr10-42717508-2	chr10	42717008	42718008	+	767.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38592.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94921865-2	chr8	94921365	94922365	+	767.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1829.0	NM_001033468	382045.0	Mm.334726	NM_001033468	ENSMUSG00000061577	Adgrg5	Gm1109|Gpr114|PGR27	adhesion G protein-coupled receptor G5	protein-coding	4.0	2.0	0.0	2.0	0.0	0.0
Merged-chr7-98905990-1	chr7	98905490	98906490	+	767.0	f1_balb.idr	intron (NM_178635, intron 14 of 14)	intron (NM_178635, intron 14 of 14)	67145.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	3.0	0.5	1.5	5.0	0.0	1.5
Merged-chr2-168445610-2	chr2	168445110	168446110	+	767.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	144755.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr14-54780436-3	chr14	54779945	54780945	+	767.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	1441.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	79.0	149.5	114.5	52.5	54.0	69.0
Merged-chr6-8650638-1	chr6	8650138	8651138	+	767.0	f0_balb.idr	intron (NM_001252266, intron 10 of 11)	intron (NM_001252266, intron 10 of 11)	107820.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13498259-2	chr10	13497759	13498759	+	767.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2769.0	NM_001330198	66848.0	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60770809-2	chr2	60770309	60771309	+	767.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 6 of 14)	intron (NM_001141932, intron 6 of 14)	-48206.0	NM_001159564	16420.0	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106411753-3	chr8	106411238	106412238	+	767.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3601.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-8243147-2	chr5	8242647	8243647	+	767.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 3 of 28)	RMER1A|Other|Other	125013.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84709888-2	chr8	84709408	84710408	+	767.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081982, intron 9 of 9)	intron (NM_001081982, intron 9 of 9)	8451.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0.0	0.0	3.5	3.0	3.5	8.0
Merged-chr13-47103217-2	chr13	47102717	47103717	+	767.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025900, intron 2 of 10)	B3|SINE|B2	3004.0	NM_025900	110052.0	Mm.131150	NM_025900	ENSMUSG00000021377	Dek	1810019E15Rik|D13H6S231E	DEK oncogene (DNA binding)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-72930680-2	chr17	72930180	72931180	+	767.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029999, intron 2 of 2)	intron (NM_029999, intron 2 of 2)	12375.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	3.0	0.5	0.0	5.0	1.0	8.5
Merged-chr4-3773243-2	chr4	3772734	3773734	+	767.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	L1MB3|LINE|L1	58270.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	2.0	13.0	9.0	7.0	10.5	7.0
Merged-chr6-146672509-1	chr6	146672009	146673009	+	767.0	f1_c57bl6.idr	Intergenic	Intergenic	15291.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	0.0	7.5	5.5	2.0	0.0	6.5
Merged-chr2-121448405-4	chr2	121447898	121448898	+	767.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011354)	promoter-TSS (NM_011354)	-800.0	NM_011354	378702.0	Mm.262252	NM_011354	ENSMUSG00000074884	Serf2	C80083|Msmac1l|m4F5rel	small EDRK-rich factor 2	protein-coding	37.0	114.5	83.5	61.0	155.5	88.0
Merged-chr8-70842095-2	chr8	70841603	70842603	+	767.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_032397)	TTS (NM_032397)	-2383.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	0.0	7.5	0.0	0.0	3.0	4.0
Merged-chr17-30003535-2	chr17	30003035	30004035	+	767.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1504.0	NM_148926	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	15.0	11.5	16.5	8.0	34.0	30.0
Merged-chr11-70228649-2	chr11	70228149	70229149	+	767.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007528, exon 3 of 9)	exon (NM_007528, exon 3 of 9)	1149.0	NM_007528	12029.0	Mm.12930	NM_007528	ENSMUSG00000000317	Bcl6b	Bazf	B cell CLL/lymphoma 6, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102818920-1	chr2	102818420	102819420	+	767.0	f1_c57bl6.idr	intron (NM_001039150, intron 13 of 13)	intron (NM_001039150, intron 13 of 13)	-72160.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	20.0	10.0	28.5	13.0	60.5	12.5
Merged-chr11-11116162-2	chr11	11115662	11116662	+	767.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177033, exon 2 of 4)	exon (NM_177033, exon 2 of 4)	2146.0	NM_177033	319922.0	Mm.337851	NM_177033	ENSMUSG00000050830	Vwc2	A930041G11Rik|G11|PSST739|UNQ739|cradin	von Willebrand factor C domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122668255-1	chr5	122667755	122668755	+	767.0	f1_c57bl6.idr	intron (NM_001038845, intron 8 of 12)	MER5A|DNA|hAT-Charlie	-14342.0	NR_106195	102465902.0		NR_106195	ENSMUSG00000099324	Mir8115	Gm28012|mmu-mir-8115	microRNA 8115	ncRNA	12.5	73.5	26.5	20.0	62.5	28.0
Merged-chr18-60978966-2	chr18	60978466	60979466	+	767.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177407, intron 15 of 17)	MIRc|SINE|MIR	15412.0	NM_001286809	12322.0	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12443326-1	chr19	12442826	12443826	+	767.0	f1_c57bl6.idr	Intergenic	Intergenic	15421.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	122.0	280.5	195.0	89.5	222.0	240.5
Merged-chr9-13536073-2	chr9	13535573	13536573	+	767.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83916.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167207313-2	chr2	167206813	167207813	+	767.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008968, exon 8 of 10)	exon (NM_008968, exon 8 of 10)	-18495.0	NM_008420	16500.0	Mm.205341	NM_008420	ENSMUSG00000050556	Kcnb1	Kcr1-1|Kv2.1|Shab	potassium voltage gated channel, Shab-related subfamily, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45870988-2	chr13	45870488	45871488	+	767.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 2 of 6)	MER20|DNA|hAT-Charlie	94003.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78268034-4	chr15	78267544	78268544	+	767.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16805.0	NR_106137	102465776.0		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	5.0	0.0	2.5	7.5	7.5	1.5
Merged-chr8-85028113-2	chr8	85027613	85028613	+	767.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026760, intron 1 of 2)	MER20|DNA|hAT-Charlie	1280.0	NM_026760	68544.0	Mm.196005	NM_026760	ENSMUSG00000041203	Trir	1110002H14Rik|2310036O22Rik|AI854688	telomerase RNA component interacting RNase	protein-coding	21.5	48.5	40.0	46.0	48.5	34.5
Merged-chr19-46367187-2	chr19	46366687	46367687	+	767.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029186, intron 2 of 8)	intron (NM_029186, intron 2 of 8)	10307.0	NM_029186	75146.0	Mm.159290	NM_029186	ENSMUSG00000025227	Mfsd13a	4930449A08Rik|4930538D17Rik|Tmem180	major facilitator superfamily domain containing 13a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101958851-2	chr5	101958351	101959351	+	767.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 6 of 66)	intron (NM_172882, intron 6 of 66)	111070.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	4.0	10.5	3.0	1.0	2.5	5.5
Merged-chr4-47010445-1	chr4	47009945	47010945	+	767.0	f1_balb.idr	Intergenic	Intergenic	-18731.0	NM_001081141	242425.0	Mm.101909	NM_001081141	ENSMUSG00000039809	Gabbr2	GABABR2|Gb2|Gm425|Gpr51	gamma-aminobutyric acid (GABA) B receptor, 2	protein-coding	8.5	9.5	14.5	12.5	4.5	11.5
Merged-chr9-120004744-2	chr9	120004244	120005244	+	767.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	18854.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	0.0	0.0	0.0	1.5	1.5	0.0
Merged-chr15-12113993-2	chr15	12113493	12114493	+	767.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3858.0	NM_011767	22763.0	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117313602-4	chr5	117313106	117314106	+	766.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5660.0	NM_001033311	231668.0	Mm.298603	NM_001033311	ENSMUSG00000066894	Vsig10	-	V-set and immunoglobulin domain containing 10	protein-coding	2.0	0.5	4.5	2.0	5.5	1.0
Merged-chr1-154058035-4	chr1	154057514	154058514	+	766.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143173.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35757216-3	chr7	35756732	35757732	+	766.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2778.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97667668-3	chr15	97667199	97668199	+	766.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38123.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46478390-3	chr19	46477875	46478875	+	766.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 10 of 11)	intron (NM_001025391, intron 10 of 11)	-23273.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	15.5	19.0	15.5	4.5	1.5	15.0
Merged-chr11-96859753-2	chr11	96859251	96860251	+	766.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019877, intron 8 of 8)	B1_Mus1|SINE|Alu	9358.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	8.5	7.5	1.0	4.5	33.5	5.5
Merged-chr4-109267566-2	chr4	109267066	109268066	+	766.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	-12709.0	NM_007943	13858.0	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4981501-2	chr12	4981001	4982001	+	766.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362349, intron 17 of 27)	intron (NM_001362349, intron 17 of 27)	64148.0	NM_001362349	320817.0	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-14439289-3	chr16	14438801	14439801	+	766.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008576, intron 14 of 30)	intron (NM_008576, intron 14 of 30)	77743.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	4.0	1.0	5.0	3.5	4.5	3.5
Merged-chr3-27743504-3	chr3	27743005	27744005	+	766.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33053.0	NM_173182	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119808578-2	chr13	119808078	119809078	+	766.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-17456.0	NM_001302550	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46689621-3	chr4	46689131	46690131	+	766.866638	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081141, intron 13 of 18)	intron (NM_001081141, intron 13 of 18)	-39432.0	NM_198664	381605.0	Mm.331595	NM_198664	ENSMUSG00000039813	Tbc1d2	A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1	TBC1 domain family, member 2	protein-coding	2.0	5.5	0.5	0.0	0.0	0.5
Merged-chr13-89904773-4	chr13	89904304	89905304	+	766.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028012, intron 7 of 7)	intron (NM_028012, intron 7 of 7)	-162292.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	6.0	0.5	2.5	4.0	0.0	2.0
Merged-chr13-4667023-4	chr13	4666572	4667572	+	766.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57908.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	4.0	0.0	9.5	5.0	9.5	9.0
Merged-chr9-106885691-2	chr9	106885191	106886191	+	766.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_175402, exon 1 of 1)	exon (NM_175402, exon 1 of 1)	1309.0	NM_175402	109095.0	Mm.431589	NM_175402	ENSMUSG00000074102	Rbm15b	1810017N16Rik	RNA binding motif protein 15B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-68962240-2	chr2	68961740	68962740	+	766.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 3 of 10)	intron (NM_001347161, intron 3 of 10)	100799.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75904458-3	chr18	75903941	75904941	+	766.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145356, intron 2 of 4)	intron (NM_145356, intron 2 of 4)	84263.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	56.0	131.0	98.0	2.0	4.0	6.0
Merged-chr3-87997396-2	chr3	87996896	87997896	+	766.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_007529, intron 2 of 13)	CpG	2960.0	NM_007529	12032.0	Mm.4598	NM_007529	ENSMUSG00000004892	Bcan	Cspg7	brevican	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-74904624-3	chr14	74904140	74905140	+	766.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	43237.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110232465-3	chr5	110231961	110232961	+	766.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027922, intron 1 of 12)	Lx5b|LINE|L1	1457.0	NM_027922	71782.0	Mm.288442	NM_027922	ENSMUSG00000029501	Ankle2	1110001J12Rik|AI661024|D5Ertd585e	ankyrin repeat and LEM domain containing 2	protein-coding	0.5	11.5	10.5	7.5	4.5	1.0
Merged-chr7-83586253-4	chr7	83585769	83586769	+	766.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177695, intron 1 of 22)	intron (NM_177695, intron 1 of 22)	1338.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	6.0	8.0	5.0	6.0	8.0	5.0
Merged-chr6-29929771-3	chr6	29929232	29930232	+	766.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037740, intron 8 of 20)	intron (NM_001037740, intron 8 of 20)	12719.0	NM_001037740	320609.0	Mm.56097	NM_177204	ENSMUSG00000039629	Strip2	D330017J20Rik|Fam40b	striatin interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128343738-3	chr10	128343234	128344234	+	766.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026444, intron 1 of 10)	intron (NM_026444, intron 1 of 10)	6007.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94960951-3	chr10	94960451	94961451	+	766.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16373.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44146880-3	chr10	44146372	44147372	+	766.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23575.0	NR_001582	70365.0	Mm.87073	NR_001582	ENSMUSG00000091358	Speer5-ps1	1700007C10Rik|SPEER-5|Speer5-ps	spermatogenesis associated glutamate (E)-rich protein 5, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-43827477-3	chr10	43826966	43827966	+	766.755554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131055, intron 1 of 2)	ORR1E|LTR|ERVL-MaLR	1559.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-72697497-4	chr11	72697007	72698007	+	766.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009671, intron 1 of 24)	ORR1E|LTR|ERVL-MaLR	7505.0	NM_009671	11736.0	Mm.10313	NM_009671	ENSMUSG00000020790	Ankfy1	Ankhzn|ZFYVE14|mKIAA1255	ankyrin repeat and FYVE domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-72162482-1	chr7	72161982	72162982	+	766.75	f0_balb.idr	intron (NM_001024703, intron 16 of 22)	intron (NM_001024703, intron 16 of 22)	144113.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-117496591-4	chr6	117496098	117497098	+	766.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152214, intron 2 of 2)	intron (NR_152214, intron 2 of 2)	1363.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19083292-3	chr7	19082757	19083757	+	766.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190491)	promoter-TSS (NM_001190491)	-592.0	NR_126095	13400.0	Mm.6529	NM_032418	ENSMUSG00000030409	Dmpk	DM|DMK|Dm15|MDPK|MT-PK	dystrophia myotonica-protein kinase	protein-coding	0.0	1.0	3.5	0.0	0.0	0.0
Merged-chr11-110476868-2	chr11	110476368	110477368	+	766.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	MTE2b|LTR|ERVL-MaLR	-1647.0	NM_001356347	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-100209158-2	chr6	100208658	100209658	+	766.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	78200.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-52170253-4	chr1	52169760	52170760	+	766.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081081, intron 14 of 17)	B3A|SINE|B2	50638.0	NM_001205313	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126741663-4	chr4	126741163	126742163	+	766.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5394.0	NM_198960	332937.0	Mm.331881	NM_198960	ENSMUSG00000042477	Tfap2e	AI505200|AP-2e|Tcfap2e	transcription factor AP-2, epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61516153-2	chr8	61515653	61516653	+	766.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 19 of 21)	intron (NM_001293772, intron 19 of 21)	28419.0	NM_145595	234309.0	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-89270680-3	chr4	89270191	89271191	+	766.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	11501.0	NM_001040654	12578.0	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin dependent kinase inhibitor 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119799003-3	chr8	119798507	119799507	+	766.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20591.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80378022-4	chr11	80377523	80378523	+	766.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027472)	promoter-TSS (NM_027472)	-8.0	NM_027472	70591.0	Mm.86860	NM_027472	ENSMUSG00000057181	5730455P16Rik	-	RIKEN cDNA 5730455P16 gene	protein-coding	4.0	2.0	1.5	1.0	1.0	4.5
Merged-chr9-45102315-1	chr9	45101815	45102815	+	766.666687	f0_balb.idr	intron (NM_001005421, intron 8 of 10)	intron (NM_001005421, intron 8 of 10)	-15561.0	NM_001014761	72821.0	Mm.229373	NM_001014761	ENSMUSG00000070304	Scn2b	2810451E09Rik|AI840361|Gm183	sodium channel, voltage-gated, type II, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43264559-3	chr4	43264079	43265079	+	766.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001310758, exon 39 of 39)	3' UTR (NM_001310758, exon 39 of 39)	-2580.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	0.0	2.5	3.0	0.0	2.5	0.0
Merged-chr1-40475898-3	chr1	40475394	40476394	+	766.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161842, intron 4 of 9)	intron (NM_001161842, intron 4 of 9)	9888.0	NM_008365	16182.0	Mm.253664	NM_008365	ENSMUSG00000026070	Il18r1	Il18ralpha|Il1rrp	interleukin 18 receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108579402-2	chr9	108578902	108579902	+	766.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031392)	promoter-TSS (NM_031392)	-732.0	NM_031392	83669.0	Mm.335454	NM_031392	ENSMUSG00000066357	Wdr6	mWDR6	WD repeat domain 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108761739-3	chr9	108761262	108762262	+	766.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34232.0	NM_029634	76500.0	Mm.276336	NM_029634	ENSMUSG00000032599	Ip6k2	1500005N04Rik|AW050208|Ihpk2	inositol hexaphosphate kinase 2	protein-coding	3.5	1.5	0.0	2.5	2.0	1.5
Merged-chr19-40345844-2	chr19	40345355	40346355	+	766.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034963, intron 11 of 22)	intron (NM_001034963, intron 11 of 22)	56455.0	NM_001034964	20411.0	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	4.0	3.5	3.0	1.0	0.0	0.0
Merged-chr3-137997465-3	chr3	137996970	137997970	+	766.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-15921.0	NM_011932	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	3.0	6.5	1.0	13.0	22.5	10.0
Merged-chr4-135066909-2	chr4	135066409	135067409	+	766.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53736.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-16903549-2	chr6	16903049	16904049	+	766.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS_Mm|LTR|ERV1	-5108.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	2.0	3.0	0.5	2.0	1.0	0.0
Merged-chr3-90412760-2	chr3	90412260	90413260	+	766.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_178876, intron 6 of 30)	intron (NM_178876, intron 6 of 30)	20876.0	NM_145540	229543.0	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	5.0	7.0	1.5	0.0	4.0	2.5
Merged-chr19-5886112-2	chr19	5885612	5886612	+	766.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001361973)	TTS (NM_001361973)	8016.0	NM_001362045	332359.0	Mm.329642	NM_198634	ENSMUSG00000044390	Tigd3	-	tigger transposable element derived 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123849539-2	chr8	123849040	123850040	+	766.666626	f0_balb.idr|f1_balb.idr	intron (NM_028536, intron 2 of 3)	RLTR17|LTR|ERVK	10669.0	NM_028536	73420.0	Mm.157746	NM_028536	ENSMUSG00000031971	Ccsap	1700054N08Rik|AI853424	centriole, cilia and spindle associated protein	protein-coding	1.0	9.0	4.5	27.0	9.5	20.5
Merged-chr17-29401269-2	chr17	29400769	29401769	+	766.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40355.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0.0	1.5	6.5	0.0	2.5	0.0
Merged-chr2-3050242-4	chr2	3049751	3050751	+	766.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A1|LTR|ERVL-MaLR	-63973.0	NM_001310434	269233.0	Mm.23044	NM_001081161	ENSMUSG00000050530	Fam171a1	9630050M13Rik|AA409679	family with sequence similarity 171, member A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31288387-3	chr5	31287904	31288904	+	766.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026298, intron 1 of 47)	intron (NM_026298, intron 1 of 47)	2710.0	NM_026298	67661.0	Mm.293023	NM_026298	ENSMUSG00000038564	Ift172	4930553F24Rik|Slb|avc1|wim	intraflagellar transport 172	protein-coding	0.0	0.0	5.5	0.0	0.0	5.5
Merged-chr2-118601431-3	chr2	118600921	118601921	+	766.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009773, intron 2 of 22)	intron (NM_009773, intron 2 of 22)	3210.0	NM_009773	12236.0	Mm.29133	NM_009773	ENSMUSG00000040084	Bub1b	AU045529|BUBR1	BUB1B, mitotic checkpoint serine/threonine kinase	protein-coding	7.5	23.5	23.0	4.0	3.0	6.0
Merged-chr11-76777807-3	chr11	76777303	76778303	+	766.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007754, exon 21 of 21)	3' UTR (NM_007754, exon 21 of 21)	-14225.0	NM_001356321	53334.0	Mm.20931	NM_016810	ENSMUSG00000010392	Gosr1	AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28	golgi SNAP receptor complex member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79650780-4	chr15	79650295	79651295	+	766.608337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029407, intron 1 of 17)	B1F1|SINE|Alu	8161.0	NM_029407	75729.0	Mm.78946	NM_029407	ENSMUSG00000042564	Fam227a	4933432B09Rik	family with sequence similarity 227, member A	protein-coding	2.0	1.5	0.5	1.0	1.5	1.0
Merged-chr17-48267765-4	chr17	48267262	48268262	+	766.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033922, intron 2 of 5)	intron (NM_001033922, intron 2 of 5)	3467.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	0.0	4.0	10.0	0.0	4.0	10.0
Merged-chr9-90112571-4	chr9	90112086	90113086	+	766.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039147, intron 1 of 12)	intron (NM_001039147, intron 1 of 12)	2234.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	14.0	51.5	26.5	12.5	43.5	32.0
Merged-chr10-56428005-3	chr10	56427507	56428507	+	766.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-3974.0	NR_152769	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86890904-2	chr12	86890404	86891404	+	766.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6090.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-56067062-1	chr8	56066562	56067562	+	766.5	f0_balb.idr	intron (NM_080438, intron 5 of 9)	intron (NM_080438, intron 5 of 9)	126237.0	NM_080438	110304.0	Mm.307061	NM_080438	ENSMUSG00000038257	Glra3	-	glycine receptor, alpha 3 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119082386-2	chr11	119081886	119082886	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007625, intron 4 of 4)	intron (NM_007625, intron 4 of 4)	3851.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50074149-2	chr16	50073649	50074649	+	766.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1297.0	NR_045935	224180.0	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-189658676-2	chr1	189658176	189659176	+	766.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081363, exon 12 of 18)	exon (NM_001081363, exon 12 of 18)	29410.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123342033-2	chr4	123341533	123342533	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007558, intron 1 of 6)	intron (NM_007558, intron 1 of 6)	1219.0	NM_001256019	12163.0	Mm.439749	NM_007558	ENSMUSG00000032726	Bmp8a	Bmp7r1|OP-2|OP2	bone morphogenetic protein 8a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5608790-2	chr17	5608290	5609290	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	116190.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6653596-2	chr15	6653096	6654096	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011815, intron 15 of 17)	intron (NM_011815, intron 15 of 17)	707.0	NR_155272	102632231.0	Mm.444780	NR_155272		LOC102632231	-	uncharacterized LOC102632231	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-75763885-2	chr16	75763385	75764385	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_027492, intron 2 of 5)	Lx2B2|LINE|L1	2933.0	NR_027492	110920.0	Mm.26704	NM_030201	ENSMUSG00000032932	Hspa13	1600002I10Rik|AV006182|B230217N24Rik|Stch	heat shock protein 70 family, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32829818-2	chr12	32829356	32830356	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021524, intron 1 of 10)	intron (NM_021524, intron 1 of 10)	5740.0	NR_045032	100504486.0	Mm.440246	NR_045032		Gdap10	Gdap-ps	ganglioside-induced differentiation-associated-protein 10	ncRNA	9.5	4.0	6.5	3.5	0.0	2.0
Merged-chr6-37150245-2	chr6	37149745	37150745	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	149731.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84554561-2	chr8	84554122	84555122	+	766.5	f0_balb.idr|f1_balb.idr	intron (NM_001252060, intron 17 of 47)	intron (NM_001252060, intron 17 of 47)	108230.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.0	0.0	5.0	0.0	1.5	2.5
Merged-chr3-96547728-1	chr3	96547228	96548228	+	766.5	f1_balb.idr	Intergenic	Intergenic	-10229.0	NM_023719	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	0.0	6.0	2.0	7.0	9.5	1.0
Merged-chr7-108935151-2	chr7	108934651	108935651	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025344, intron 1 of 7)	intron (NM_025344, intron 1 of 7)	736.0	NM_025344	66085.0	Mm.182962	NM_025344	ENSMUSG00000031029	Eif3f	0610037M02Rik|AA409853|Eif3s5	eukaryotic translation initiation factor 3, subunit F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-51811916-4	chr12	51811412	51812412	+	766.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144788, intron 2 of 42)	intron (NM_144788, intron 2 of 42)	17624.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	24.0	15.0	10.0	3.5	13.5	16.0
Merged-chr7-79723044-2	chr7	79722544	79723544	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175640, intron 7 of 8)	MIRc|SINE|MIR	-8858.0	NM_001291222	16576.0	Mm.101633	NM_010626	ENSMUSG00000050382	Kif7	-	kinesin family member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53270764-2	chr4	53270264	53271264	+	766.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033139)	promoter-TSS (NR_033139)	-532.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47473819-2	chr17	47473319	47474319	+	766.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28472.0	NM_001356290	63856.0	Mm.275901	NM_022015	ENSMUSG00000023980	Taf8	AW260255|Tbn	TATA-box binding protein associated factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78984599-2	chr15	78984099	78985099	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024716, intron 1 of 13)	intron (NM_001024716, intron 1 of 13)	1543.0	NM_001024716	110253.0	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139286805-2	chr4	139286305	139287305	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 6 of 9)	intron (NM_001037761, intron 6 of 9)	23903.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	2.0	6.5	3.0	3.0	3.0	1.0
Merged-chr17-44782588-2	chr17	44782088	44783088	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178652, intron 1 of 11)	intron (NM_178652, intron 1 of 11)	5422.0	NM_178652	109115.0	Mm.431327	NM_178652	ENSMUSG00000038954	Supt3	2310066G22Rik|AI315192|SPT3|SPT3L|Supt3h	suppressor of Ty 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5570165-2	chr19	5569665	5570665	+	766.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033448, exon 2 of 2)	exon (NM_001033448, exon 2 of 2)	2141.0	NM_001033448	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-59143016-2	chr1	59142516	59143516	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164682, intron 12 of 22)	B3|SINE|B2	18620.0	NM_145143	227157.0	Mm.474049	NM_145143	ENSMUSG00000079550	Mpp4	Dlg6	membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4)	protein-coding	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28290792-2	chr17	28290292	28291292	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 3 of 7)	intron (NM_011145, intron 3 of 7)	-17170.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70654661-2	chr9	70654161	70655161	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172772, intron 1 of 8)	MTEa|LTR|ERVL-MaLR	2513.0	NM_172772	235461.0	Mm.170855	NM_172772	ENSMUSG00000042444	Mindy2	AI465301|B230380D07Rik|Fam63b|mKIAA1164	MINDY lysine 48 deubiquitinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78956595-2	chr11	78956095	78957095	+	766.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010927, exon 25 of 27)	exon (NM_010927, exon 25 of 27)	28329.0	NM_001159301	16859.0	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-43689290-3	chr10	43688799	43689799	+	766.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56859.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120776799-2	chr5	120776299	120777299	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145226, intron 1 of 15)	intron (NM_145226, intron 1 of 15)	860.0	NM_145226	246727.0	Mm.204887	NM_145226	ENSMUSG00000032661	Oas3	Oasl10	2'-5' oligoadenylate synthetase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115246569-2	chr11	115246069	115247069	+	766.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033393, exon 10 of 10)	3' UTR (NM_001033393, exon 10 of 10)	20674.0	NM_010350	14813.0	Mm.39090	NM_010350	ENSMUSG00000020734	Grin2c	GluN2C|NMDAR2C|NR2C	glutamate receptor, ionotropic, NMDA2C (epsilon 3)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59643974-4	chr15	59643493	59644493	+	766.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4661.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32116281-2	chr12	32115781	32116781	+	766.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55002.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83216687-2	chr17	83216187	83217187	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134117, intron 1 of 6)	intron (NM_134117, intron 1 of 6)	1404.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-60788697-2	chr14	60788197	60789197	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027436, intron 3 of 18)	MTD|LTR|ERVL-MaLR	4131.0	NR_040642	70478.0	Mm.274650	NM_027436	ENSMUSG00000021993	Mipep	5730405E07Rik|MIP	mitochondrial intermediate peptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52031474-3	chr3	52030982	52031982	+	766.483337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	73524.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-107277135-3	chr7	107276645	107277645	+	766.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	67700.0	NM_029660	76572.0	Mm.128134	NM_029660	ENSMUSG00000073894	Rbmxl2	1700012H05Rik|Hnrnpg-t	RNA binding motif protein, X-linked-like 2	protein-coding	0.0	0.0	4.5	0.0	7.5	1.5
Merged-chr3-37693645-3	chr3	37693119	37694119	+	766.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30741.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62433771-3	chr15	62433276	62434276	+	766.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-214325.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-52115999-3	chr5	52115477	52116477	+	766.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	20040.0	NR_105845	102466648.0		NR_105845	ENSMUSG00000098726	Mir6417	Gm27334|mmu-mir-6417	microRNA 6417	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-68193440-3	chr8	68192866	68193866	+	766.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83162.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	21.5	18.0	16.0	26.0	18.0	16.0
Merged-chr7-102567964-3	chr7	102567463	102568463	+	766.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2481.0	NM_009277	20821.0	Mm.321227	NM_009277	ENSMUSG00000030966	Trim21	Ro52|Ssa1	tripartite motif-containing 21	protein-coding	1.5	7.5	0.0	1.5	7.5	3.0
Merged-chr17-46032653-7	chr17	46032099	46033099	+	766.3809809999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287058)	promoter-TSS (NM_001287058)	-222.0	NM_001287057	22339.0	Mm.282184	NM_009505	ENSMUSG00000023951	Vegfa	Vegf|Vpf	vascular endothelial growth factor A	protein-coding	0.0	1.5	1.0	0.0	1.0	0.5
Merged-chr16-24505299-4	chr16	24504812	24505812	+	766.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 3 of 12)	intron (NM_178665, intron 3 of 12)	-24002.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-67080718-2	chr13	67080218	67081218	+	766.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001012449, intron 1 of 2)	intron (NM_001012449, intron 1 of 2)	827.0	NM_001012448	432769.0	Mm.458849	NM_001012325	ENSMUSG00000058883	Zfp708	Rslcan11	zinc finger protein 708	protein-coding	5.5	12.5	9.0	10.5	13.0	7.5
Merged-chr1-177089798-2	chr1	177089298	177090298	+	766.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011785, intron 5 of 12)	intron (NM_011785, intron 5 of 12)	158969.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51187343-2	chr14	51186842	51187842	+	766.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8581.0	NM_007449	11731.0	Mm.377077	NM_007449	ENSMUSG00000047894	Ang2	Angrp|Raa3|Rnase5b	angiogenin, ribonuclease A family, member 2	protein-coding	13.0	5.0	0.5	0.0	0.5	0.0
Merged-chr10-34204308-2	chr10	34203808	34204808	+	766.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	3243.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66080373-4	chr7	66079899	66080899	+	766.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_024439, exon 2 of 6)	exon (NM_024439, exon 2 of 6)	750.0	NM_024439	109815.0	Mm.482127	NM_024439	ENSMUSG00000075701	Selenos	1500011E07Rik|C78786|H-4|H-47|H4|H47|Sels|Vimp	selenoprotein S	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-51169033-2	chr6	51168533	51169533	+	766.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	100877.0	NR_029719	387166.0		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	0.0	0.0	0.0	0.0	3.0	0.0
Merged-chr13-48566546-4	chr13	48566028	48567028	+	766.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28256.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67447016-3	chr17	67446543	67447543	+	766.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92552.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-74310225-3	chr4	74309713	74310713	+	766.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356561, intron 5 of 20)	intron (NM_001356561, intron 5 of 20)	58334.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-106708491-3	chr4	106707978	106708978	+	766.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001126487, exon 8 of 24)	exon (NM_001126487, exon 8 of 24)	19452.0	NM_001126487	381538.0	Mm.318201	NM_001126487	ENSMUSG00000047502	Mroh7	Gm1027|Heatr8	maestro heat-like repeat family member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29697291-2	chr6	29696791	29697791	+	766.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301407, intron 1 of 7)	intron (NM_001301407, intron 1 of 7)	3077.0	NM_146173	232670.0	Mm.225289	NM_146173	ENSMUSG00000001763	Tspan33	1300010A20Rik|Pen	tetraspanin 33	protein-coding	3.5	3.0	0.5	2.0	0.5	2.5
Merged-chr3-84356802-4	chr3	84356302	84357302	+	766.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040752, intron 3 of 3)	RSINE1|SINE|B4	23119.0	NR_040752	75309.0	Mm.159497	NR_040752	ENSMUSG00000104004	4930565D16Rik	-	RIKEN cDNA 4930565D16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88621598-3	chr8	88621117	88622117	+	766.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14511.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	3.5	10.0	10.5	5.0	1.0	2.0
Merged-chr2-153478763-2	chr2	153478263	153479263	+	766.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134300, intron 2 of 10)	intron (NM_001134300, intron 2 of 10)	-34284.0	NM_001001986	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89282783-4	chr6	89282286	89283286	+	766.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131021, intron 1 of 3)	L1M4|LINE|L1	2939.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76942109-3	chr14	76941648	76942648	+	766.305542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94469.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	12.0	18.0	15.5	2.5	0.5	0.5
Merged-chr2-121480706-2	chr2	121480206	121481206	+	766.299988	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-6683.0	NM_001081975	100034361.0	Mm.270393	NM_001081975	ENSMUSG00000048222	Mfap1b	-	microfibrillar-associated protein 1B	protein-coding	3.0	0.0	2.0	1.0	17.0	0.0
Merged-chr8-108817401-3	chr8	108816902	108817902	+	766.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 3 of 9)	Lx7|LINE|L1	102758.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.0	0.0	4.5	1.0	5.0	2.0
Merged-chr11-121736334-3	chr11	121735835	121736835	+	766.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33908.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133681185-2	chr4	133680685	133681685	+	766.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001080819, exon 20 of 20)	exon (NM_001080819, exon 20 of 20)	-8019.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35843778-2	chr17	35843278	35844278	+	766.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001010833, intron 1 of 15)	B2_Mm2|SINE|B2	2280.0	NM_001010833	240087.0	Mm.218511	NM_001010833	ENSMUSG00000061607	Mdc1	6820401C03|AA413496|Nfbd1|mKIAA0170	mediator of DNA damage checkpoint 1	protein-coding	0.0	0.0	0.5	0.0	4.0	0.0
Merged-chr5-121840565-2	chr5	121840065	121841065	+	766.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3706.0	NM_008507	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69363704-2	chr12	69363204	69364204	+	766.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6528.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	1.5	0.0	0.0	6.0	0.0	1.0
Merged-chr1-132342391-2	chr1	132341891	132342891	+	766.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25557.0	NM_001311108	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-66897379-3	chr6	66896883	66897883	+	766.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177558, intron 1 of 4)	intron (NM_001177558, intron 1 of 4)	492.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84919954-3	chr10	84919454	84920454	+	766.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013441, intron 1 of 8)	intron (NM_001013441, intron 1 of 8)	2341.0	NM_183172	237422.0	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54407607-3	chr14	54407158	54408158	+	766.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	(TA)n|Simple_repeat|Simple_repeat	1814.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	50.0	106.5	106.5	69.0	102.5	127.0
Merged-chr16-46148765-4	chr16	46148251	46149251	+	766.21875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	6326.0	NM_001304528	11615.0	Mm.330692	NM_001304528	ENSMUSG00000048087	Gm4737	AL024110|EG11615	predicted gene 4737	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89963495-4	chr3	89962962	89963962	+	766.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081182)	promoter-TSS (NM_001081182)	-130.0	NM_001081182	54667.0	Mm.30455	NM_001081182	ENSMUSG00000060671	Atp8b2	Id	ATPase, class I, type 8B, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109273276-4	chr3	109272796	109273796	+	766.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67387.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	2.5	7.5	8.0	1.5	1.5	10.5
Merged-chr3-9783335-3	chr3	9782856	9783856	+	766.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 1 of 7)	intron (NM_053182, intron 1 of 7)	50323.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.0	5.0	1.5	1.5	3.0	1.5
Merged-chr2-167922964-2	chr2	167922464	167923464	+	766.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-9363.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154163498-3	chr4	154162985	154163985	+	766.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2801.0	NM_026388	67808.0	Mm.288737	NM_026388	ENSMUSG00000029030	Tprgl	1200015A19Rik|Svap30|Tprg1l|mover	transformation related protein 63 regulated like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87149943-4	chr17	87149445	87150445	+	766.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42266.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	14.0	15.0	13.0	9.0	13.5	10.0
Merged-chr2-155097027-2	chr2	155096527	155097527	+	766.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NR_040634)	TTS (NR_040634)	3052.0	NR_040634	100504268.0	Mm.410858	NR_040634	ENSMUSG00000087254	2310005A03Rik	-	RIKEN cDNA 2310005A03 gene	ncRNA	12.0	40.0	15.0	25.0	52.0	25.5
Merged-chr6-87335846-2	chr6	87335346	87336346	+	766.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054041)	promoter-TSS (NM_054041)	-71.0	NM_054041	69538.0	Mm.232525	NM_054041	ENSMUSG00000033420	Antxr1	2310008J16Rik|2810405N18Rik|Antrx1|Tem8	anthrax toxin receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-59883990-4	chr1	59883495	59884495	+	766.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29011.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	0.5	0.0	1.0	0.5	6.5	1.5
Merged-chr15-79325217-2	chr15	79324780	79325780	+	766.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_016915, intron 1 of 15)	intron (NM_016915, intron 1 of 15)	3091.0	NM_016915	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	1.5	3.0	0.0	0.5	0.0	2.5
Merged-chr11-76454701-2	chr11	76454201	76455201	+	766.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 12 of 21)	intron (NM_001346670, intron 12 of 21)	13764.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.0	0.0	2.0	0.0	8.5	0.5
Merged-chr2-148684920-2	chr2	148684420	148685420	+	766.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_028986, exon 2 of 6)	exon (NM_028986, exon 2 of 6)	3800.0	NM_028986	74533.0	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34118647-4	chr10	34118140	34119140	+	766.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9332.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34639443-4	chr2	34638947	34639947	+	766.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	115785.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105928335-4	chr3	105927804	105928804	+	766.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033780, intron 2 of 5)	intron (NM_001033780, intron 2 of 5)	4360.0	NM_001033780	433638.0	Mm.239081	NM_001033780	ENSMUSG00000074342	I830077J02Rik	-	RIKEN cDNA I830077J02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34984627-2	chr7	34984129	34985129	+	766.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 9 of 14)	intron (NM_008820, intron 9 of 14)	71937.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.0	0.0	3.0	0.0	0.0	3.0
Merged-chr10-57448118-3	chr10	57447587	57448587	+	766.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38266.0	NR_045353	74928.0	Mm.416643	NR_045353	ENSMUSG00000097370	4930467K11Rik	-	RIKEN cDNA 4930467K11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11777415-3	chr19	11776918	11777918	+	766.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_152220)	TTS (NM_152220)	7003.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	1.0	20.0	7.0	12.5	7.0	13.0
Merged-chr8-128552286-3	chr8	128551771	128552771	+	766.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-133383.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0.5	0.0	5.0	15.5	10.0	29.5
Merged-chr10-77591066-3	chr10	77590554	77591554	+	766.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145925, intron 3 of 5)	intron (NM_145925, intron 3 of 5)	9399.0	NM_145925	108705.0	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540|PBF	pituitary tumor-transforming 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130578347-3	chr2	130577854	130578854	+	766.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	2185.0	NM_011025	18429.0	Mm.16745	NM_011025	ENSMUSG00000027301	Oxt	OT|Oxy	oxytocin	protein-coding	0.0	1.0	0.0	0.5	3.5	1.5
Merged-chr2-78915105-4	chr2	78914620	78915620	+	766.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356395, intron 4 of 5)	intron (NM_001356395, intron 4 of 5)	45442.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99385420-5	chr9	99384832	99385832	+	766.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008624)	TTS (NM_008624)	-26802.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122699629-2	chr5	122699129	122700129	+	766.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7915.0	NM_001310720	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30764517-4	chr13	30764005	30765005	+	766.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013674, exon 9 of 9)	3' UTR (NM_013674, exon 9 of 9)	15272.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-86948694-2	chr10	86948194	86949194	+	766.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 17 of 68)	L2a|LINE|L2	59248.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7680227-6	chr10	7679681	7680681	+	766.069458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033219, exon 1 of 1)	non-coding (NR_033219, exon 1 of 1)	954.0	NM_001358649	18537.0	Mm.258431	NM_008786	ENSMUSG00000019795	Pcmt1	C79501|PIMT	protein-L-isoaspartate (D-aspartate) O-methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114998148-3	chr11	114997619	114998619	+	766.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134158, intron 3 of 3)	intron (NM_134158, intron 3 of 3)	3761.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	42.5	42.0	22.0	20.0	44.0	24.5
Merged-chr6-127142664-4	chr6	127142190	127143190	+	766.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009829, intron 3 of 4)	intron (NM_009829, intron 3 of 4)	-6699.0	NR_040274	77558.0	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131046466-3	chr1	131045829	131046829	+	766.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26484.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	0.0	1.5	1.0	0.0	0.0	0.0
Merged-chr14-20676166-2	chr14	20675666	20676666	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172596, intron 2 of 22)	intron (NM_172596, intron 2 of 22)	1845.0	NM_001168273	218811.0	Mm.173119	NM_172596	ENSMUSG00000039367	Sec24c	2610204K03Rik|mKIAA0079	Sec24 related gene family, member C (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-117542656-2	chr6	117542156	117543156	+	766.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47421.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84697901-2	chr8	84697395	84698395	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198020, intron 12 of 16)	B3|SINE|B2	-3562.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0.0	0.0	4.0	0.0	2.0	0.5
Merged-chr8-105603209-2	chr8	105602709	105603709	+	766.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-2020.0	NM_001081241	75687.0	Mm.41261	NM_001081241	ENSMUSG00000038604	Ripor1	2310066E14Rik|AI837433|Fam65a	RHO family interacting cell polarization regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59807613-2	chr11	59807113	59808113	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146018, intron 2 of 12)	intron (NM_146018, intron 2 of 12)	1988.0	NM_001271357	216805.0	Mm.339640	NM_146018	ENSMUSG00000032633	Flcn	AU014660|B430214A04Rik|Bhd|FLCL	folliculin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-65049327-2	chr6	65048827	65049827	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253392, intron 1 of 21)	intron (NM_001253392, intron 1 of 21)	6121.0	NM_001253392	13990.0	Mm.99113	NM_007958	ENSMUSG00000029920	Smarcad1	AV081750|AW226546|D6Pas1|Etl1|etl-1|mKIAA1122	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3437095-2	chr19	3436595	3437595	+	766.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22551.0	NM_010253	14419.0	Mm.4655	NM_010253	ENSMUSG00000024907	Gal	Galn	galanin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83709097-2	chr17	83708597	83709597	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 2 of 16)	B4|SINE|B4	2934.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57633636-2	chr9	57633136	57634136	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007783, intron 1 of 12)	intron (NM_007783, intron 1 of 12)	12017.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94601321-2	chr8	94600838	94601838	+	766.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026274)	promoter-TSS (NM_026274)	388.0	NM_028221	102122.0	Mm.250425	NM_028221	ENSMUSG00000031774	Fam192a	1700001O11Rik|2310065K24Rik|AI596259|Nip30	family with sequence similarity 192, member A	protein-coding	20.5	121.0	54.5	32.0	95.0	99.0
Merged-chr15-97966631-2	chr15	97966131	97967131	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356508, intron 3 of 7)	intron (NM_001356508, intron 3 of 7)	2402.0	NM_001252153	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0.0	3.5	1.5	0.0	8.0	1.5
Merged-chr7-133776438-1	chr7	133775938	133776938	+	766.0	f0_balb.idr	promoter-TSS (NM_025850)	promoter-TSS (NM_025850)	365.0	NM_001286032	101437.0	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32|muDDX32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-18718530-1	chr13	18718030	18719030	+	766.0	f1_balb.idr	intron (NM_172120, intron 1 of 28)	intron (NM_172120, intron 1 of 28)	1238.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	22.0	37.5	21.0	1.0	20.5	26.0
Merged-chr6-32179758-2	chr6	32179258	32180258	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 24 of 31)	intron (NM_175750, intron 24 of 31)	129470.0	NM_029587	76382.0	Mm.23510	NM_029587	ENSMUSG00000029766	1700012A03Rik	AI429084	RIKEN cDNA 1700012A03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87970285-1	chr17	87969785	87970785	+	766.0	f1_c57bl6.idr	Intergenic	(TAAA)n|Simple_repeat|Simple_repeat	-4765.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-82633355-1	chr4	82632855	82633855	+	766.0	f0_c57.idr	Intergenic	Intergenic	125366.0	NR_137202	102635783.0	Mm.41666	NR_137202		Gm11266	-	predicted gene 11266	ncRNA	9.0	16.5	4.0	0.0	4.0	3.5
Merged-chr11-98858179-2	chr11	98857679	98858679	+	766.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5419.0	NM_197940	68524.0	Mm.28661	NM_197940	ENSMUSG00000038013	Wipf2	1110014J05Rik|5730509C05Rik|AA407487|Gm1176|Wich|Wire	WAS/WASL interacting protein family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146768500-2	chr5	146768000	146769000	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 2 of 8)	intron (NM_011669, intron 2 of 8)	26456.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-52119898-1	chr1	52119398	52120398	+	766.0	f0_balb.idr	intron (NM_001205313, intron 1 of 24)	intron (NM_001205313, intron 1 of 24)	276.0	NM_001205313	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166727375-2	chr2	166726875	166727875	+	766.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-13543.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137387644-2	chr4	137387144	137388144	+	766.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22147.0	NM_001126318	242711.0	Mm.475541	NM_001126318	ENSMUSG00000078520	Cela3a	Gm13011	chymotrypsin-like elastase family, member 3A	protein-coding	0.0	1.0	2.5	0.0	1.0	1.0
Merged-chr8-69882393-2	chr8	69881838	69882838	+	766.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026818, exon 8 of 8)	exon (NM_026818, exon 8 of 8)	5054.0	NM_026818	68709.0	Mm.334584	NM_026818	ENSMUSG00000044006	Cilp2	1110031K21Rik|AA407300|CLIP-2	cartilage intermediate layer protein 2	protein-coding	0.0	0.0	1.5	10.0	2.5	0.0
Merged-chr16-22655791-2	chr16	22655291	22656291	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346673, intron 1 of 23)	intron (NM_001346673, intron 1 of 23)	1440.0	NM_138650	110197.0	Mm.194986	NM_138650	ENSMUSG00000022861	Dgkg	2900055E17Rik|90kDa|AI854428|Dagk3|E430001K23Rik|mKIAA4131	diacylglycerol kinase, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36742906-2	chr18	36742406	36743406	+	766.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028036)	TTS (NM_028036)	1681.0	NM_010885	17991.0	Mm.29867	NM_010885	ENSMUSG00000014294	Ndufa2	AV000592|B8|C1-B8|CI-B8	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-14921800-3	chr17	14921302	14922302	+	766.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175173, intron 8 of 24)	intron (NM_175173, intron 8 of 24)	21322.0	NM_175173	71682.0	Mm.122698	NM_175173	ENSMUSG00000046991	Wdr27	0610012K18Rik	WD repeat domain 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148499820-3	chr5	148499365	148500365	+	766.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51808.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	18.0	6.5	10.5	2.0	0.0	3.0
Merged-chr17-27132760-1	chr17	27132260	27133260	+	766.0	f1_balb.idr	intron (NM_026063, intron 1 of 3)	intron (NM_026063, intron 1 of 3)	1131.0	NM_026063	67267.0	Mm.272389	NM_026063	ENSMUSG00000024208	Uqcc2	2900010M23Rik|Cbp6|M19|Mnf1	ubiquinol-cytochrome c reductase complex assembly factor 2	protein-coding	4.5	1.5	6.0	4.5	0.5	4.5
Merged-chr7-70753700-2	chr7	70753200	70754200	+	766.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-386954.0	NM_183261	11819.0	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116077344-3	chr4	116076850	116077850	+	766.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153521, intron 1 of 9)	intron (NM_153521, intron 1 of 9)	2081.0	NM_153521	230654.0	Mm.3655	NM_153521	ENSMUSG00000028703	Lrrc41	AA409966|AW555107|D630045E04Rik|D730026A16Rik|MUF1	leucine rich repeat containing 41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34679683-2	chr18	34679183	34680183	+	766.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27947.0	NM_178347	52563.0	Mm.196638	NM_178347	ENSMUSG00000024370	Cdc23	6030435O18|D18Ertd243e	CDC23 cell division cycle 23	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr2-90503647-2	chr2	90503147	90504147	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-24473.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	4.0	8.5	7.0	4.0	8.5	7.0
Merged-chr6-92944386-1	chr6	92943886	92944886	+	766.0	f0_balb.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	3804.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr3-130946154-3	chr3	130945593	130946593	+	766.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-164204.0	NM_010703	16842.0	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-74906586-1	chr9	74906086	74907086	+	766.0	f1_balb.idr	Intergenic	Intergenic	44665.0	NM_008262	15379.0	Mm.303355	NM_008262	ENSMUSG00000043013	Onecut1	D9Ertd423e|HNF-6|Hfh12|Hnf6|Hnf6b|OC-1|Oc1	one cut domain, family member 1	protein-coding	0.0	0.0	1.0	0.0	0.5	0.0
Merged-chr2-83740027-3	chr2	83739478	83740478	+	766.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008402, intron 2 of 29)	intron (NM_008402, intron 2 of 29)	15581.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-18840224-2	chr7	18839724	18840724	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153760, intron 1 of 4)	RMER10B|LTR|ERVL	258.0	NM_153760	243864.0	Mm.233503	NM_153760	ENSMUSG00000040987	Mill2	Micb	MHC I like leukocyte 2	protein-coding	11.5	44.5	47.5	11.0	35.5	30.5
Merged-chr9-25158444-1	chr9	25157944	25158944	+	766.0	f0_balb.idr	Intergenic	L2c|LINE|L2	-6663.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80783336-2	chr7	80782834	80783834	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	19997.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	29.5	73.5	48.5	14.5	40.0	26.5
Merged-chr13-59002994-2	chr13	59002494	59003494	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	195297.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	12.5	28.5	19.0	12.5	30.0	16.0
Merged-chr10-79859934-2	chr10	79859434	79860434	+	766.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001170935)	TTS (NM_001170935)	-2653.0	NR_105875	102465549.0		NR_105875	ENSMUSG00000098562	Mir6910	Gm27763|mmu-mir-6910	microRNA 6910	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59037156-2	chr9	59036656	59037656	+	766.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042752)	promoter-TSS (NM_001042752)	-715.0	NM_008684	18007.0	Mm.42249	NM_008684	ENSMUSG00000032340	Neo1	2610028H22Rik|AI327052|D930014N22Rik|Igdcc2	neogenin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137308515-2	chr4	137307895	137308895	+	766.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30760.0	NM_009523	22417.0	Mm.20355	NM_009523	ENSMUSG00000036856	Wnt4	Wnt-4	wingless-type MMTV integration site family, member 4	protein-coding	4.0	3.0	10.0	3.0	2.0	19.0
Merged-chr16-90045789-3	chr16	90045289	90046289	+	766.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71090.0	NM_001145886	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117068745-2	chr8	117068245	117069245	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 5 of 42)	intron (NM_029686, intron 5 of 42)	13704.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97312724-2	chr7	97312224	97313224	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177412, intron 8 of 9)	intron (NM_001177412, intron 8 of 9)	13240.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0.0	0.0	0.0	0.0	1.0	2.0
Merged-chr16-77318321-2	chr16	77317821	77318821	+	766.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11007.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44299495-3	chr19	44298992	44299992	+	766.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009128, intron 3 of 5)	intron (NM_009128, intron 3 of 5)	-3679.0	NR_039574	100628619.0		NR_039574	ENSMUSG00000093315	Mir5114	mmu-mir-5114|mu-mir-5114	microRNA 5114	ncRNA	0.0	4.5	2.0	0.0	1.5	2.5
Merged-chr1-45927138-2	chr1	45926638	45927638	+	766.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1544.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12119159-1	chr15	12118659	12119659	+	766.0	f0_balb.idr	intron (NM_001358823, intron 2 of 18)	intron (NM_001358823, intron 2 of 18)	1308.0	NM_001358823	22763.0	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85311913-1	chr8	85311413	85312413	+	766.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	12281.0	NR_028268	56452.0	Mm.29709	NM_019716	ENSMUSG00000031697	Orc6	6720420I10Rik|Orc6l	origin recognition complex, subunit 6	protein-coding	0.5	0.0	6.5	4.0	0.0	4.0
Merged-chr10-68256336-2	chr10	68255836	68256836	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	22390.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	2.5	0.0	1.5	13.0	0.0	5.5
Merged-chr6-99207513-2	chr6	99207013	99208013	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	59002.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91352889-2	chr16	91352389	91353389	+	766.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19894.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23876784-2	chr18	23876284	23877284	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	72814.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-130657294-2	chr7	130656794	130657794	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004468, intron 3 of 21)	intron (NM_001004468, intron 3 of 21)	-35262.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-126629714-2	chr3	126629214	126630214	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	32763.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	100.0	168.0	206.5	100.5	314.0	265.5
Merged-chr6-83415721-4	chr6	83415210	83416210	+	765.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347313, intron 3 of 11)	intron (NM_001347313, intron 3 of 11)	-14608.0	NR_105793	102465194.0		NR_105793	ENSMUSG00000099045	Mir6374	Gm27292|mmu-mir-6374	microRNA 6374	ncRNA	21.0	40.5	26.5	6.5	11.5	7.5
Merged-chr4-126257290-4	chr4	126256753	126257753	+	765.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144941)	promoter-TSS (NM_144941)	-934.0	NM_001145970	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	8.5	30.5	13.5	6.0	30.0	15.5
Merged-chr3-59235029-3	chr3	59234538	59235538	+	765.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 18 of 43)	intron (NM_177855, intron 18 of 43)	-24156.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	0.0	5.0	8.5	0.0	5.0	9.5
Merged-chr11-118229001-3	chr11	118228508	118229508	+	765.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	PB1D10|SINE|Alu	-16266.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90903670-3	chr2	90903178	90904178	+	765.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026688, intron 2 of 6)	intron (NM_026688, intron 2 of 6)	1043.0	NM_026688	68349.0	Mm.30113	NM_026688	ENSMUSG00000005510	Ndufs3	0610010M09Rik|CI-30kD	NADH dehydrogenase (ubiquinone) Fe-S protein 3	protein-coding	5.5	12.0	9.5	8.5	11.0	12.5
Merged-chr9-62844982-3	chr9	62844483	62845483	+	765.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033175, intron 2 of 6)	intron (NM_001033175, intron 2 of 6)	6196.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76625670-3	chr15	76625174	76626174	+	765.888916	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	TTS (NM_183091)	TTS (NM_183091)	410.0	NM_025842	66914.0	Mm.30028	NM_025842	ENSMUSG00000115987	Vps28	1110014J03Rik|CIIA|D730005C08Rik	vacuolar protein sorting 28	protein-coding	37.0	75.5	61.0	31.5	84.5	46.5
Merged-chr14-25397149-3	chr14	25396656	25397656	+	765.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62029.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165948992-2	chr2	165948512	165949512	+	765.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43625.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	10.5	24.5	10.0	17.5	17.5	16.5
Merged-chr19-4055009-2	chr19	4054509	4055509	+	765.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	4438.0	NM_144869	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97838913-4	chr11	97838455	97839455	+	765.854187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010688)	TTS (NM_010688)	-1825.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	1.0	25.0	12.0	2.0	5.0	8.5
Merged-chr11-76481700-2	chr11	76481200	76482200	+	765.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 2 of 21)	intron (NM_001346670, intron 2 of 21)	12795.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	29.0	47.0	44.5	26.0	50.0	43.5
Merged-chr7-79822278-2	chr7	79821778	79822778	+	765.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_008486, exon 21 of 21)	exon (NM_008486, exon 21 of 21)	11551.0	NM_008589	17293.0	Mm.31472	NM_008589	ENSMUSG00000030543	Mesp2	bHLHc6	mesoderm posterior 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39129947-2	chr6	39129447	39130447	+	765.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_045813, intron 1 of 3)	intron (NR_045813, intron 1 of 3)	11474.0	NR_045813	75379.0	Mm.348014	NR_045813	ENSMUSG00000073144	4930599N23Rik	-	RIKEN cDNA 4930599N23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-83876514-2	chr3	83876014	83877014	+	765.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34906.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-52002967-2	chr12	52002467	52003467	+	765.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347404, intron 2 of 3)	intron (NM_001347404, intron 2 of 3)	3540.0	NM_029545	328092.0	Mm.2821	NM_029545	ENSMUSG00000020956	Dtd2	4930578F06Rik|6530401N04Rik|B830049N13Rik	D-tyrosyl-tRNA deacylase 2	protein-coding	0.0	0.0	3.5	0.0	6.5	1.0
Merged-chr10-60255997-2	chr10	60255497	60256497	+	765.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-21631.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-67797741-2	chr13	67797245	67798245	+	765.833374	f0_c57.idr|f1_c57bl6.idr	intron (NR_045194, intron 2 of 2)	intron (NR_045194, intron 2 of 2)	-16071.0	NM_198322	212569.0	Mm.358842	NM_198322	ENSMUSG00000030446	Zfp273	6820416H06Rik|Rslcan1	zinc finger protein 273	protein-coding	9.5	20.0	9.0	5.5	8.0	5.5
Merged-chr16-50397103-3	chr16	50396598	50397598	+	765.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 2 of 16)	MER5A|DNA|hAT-Charlie	35291.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	6.5	18.5	10.0	7.5	8.5	4.0
Merged-chr7-5017811-2	chr7	5017311	5018311	+	765.833313	f1_balb.idr|f1_c57bl6.idr	exon (NM_025324, exon 2 of 2)	exon (NM_025324, exon 2 of 2)	2303.0	NM_025324	66056.0	Mm.19974	NM_025324	ENSMUSG00000051184	Zfp524	0610012F07Rik|2300009P13Rik|Znf524	zinc finger protein 524	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124000021-2	chr5	123999521	124000521	+	765.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_145070, intron 22 of 31)	intron (NM_145070, intron 22 of 31)	3169.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4107584-3	chr12	4107094	4108094	+	765.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153082, exon 7 of 7)	3' UTR (NM_153082, exon 7 of 7)	25020.0	NM_153082	217378.0	Mm.271656	NM_153082	ENSMUSG00000020657	Dnajc27	AI639580|C330021A05Rik|Rabj|Rbj	DnaJ heat shock protein family (Hsp40) member C27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97110839-3	chr15	97110337	97111337	+	765.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54881.0	NM_027052	69354.0	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-22701143-3	chr10	22700646	22701646	+	765.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178934, intron 4 of 4)	intron (NM_178934, intron 4 of 4)	28286.0	NR_106123	102465768.0		NR_106123	ENSMUSG00000098714	Mir7663	Gm28034|mmu-mir-7663	microRNA 7663	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124873269-3	chr5	124872803	124873803	+	765.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081750, intron 2 of 3)	intron (NM_001081750, intron 2 of 3)	10598.0	NM_001081750	269704.0	Mm.138617	NM_001081750	ENSMUSG00000079215	Zfp664	AW060232|D930038J03Rik|ZFOC1|Znf664	zinc finger protein 664	protein-coding	0.0	2.0	0.5	0.0	3.0	0.0
Merged-chr8-122263548-5	chr8	122263058	122264058	+	765.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18583.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	0.0	7.0	0.0	0.0	2.5	6.5
Merged-chr8-115597788-3	chr8	115597277	115598277	+	765.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109117.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61277815-4	chr9	61277318	61278318	+	765.825012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045334, intron 3 of 4)	intron (NR_045334, intron 3 of 4)	15991.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36634745-2	chr16	36634245	36635245	+	765.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	31332.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-105214314-5	chr13	105213826	105214826	+	765.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360891, intron 5 of 7)	L1MA7|LINE|L1	78688.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	10.5	38.5	29.5	28.0	32.5	20.5
Merged-chr13-30630185-4	chr13	30629681	30630681	+	765.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15138.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27119379-3	chr17	27118870	27119870	+	765.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_080553, exon 55 of 58)	exon (NM_080553, exon 55 of 58)	14521.0	NM_026063	67267.0	Mm.272389	NM_026063	ENSMUSG00000024208	Uqcc2	2900010M23Rik|Cbp6|M19|Mnf1	ubiquinol-cytochrome c reductase complex assembly factor 2	protein-coding	0.0	3.0	1.5	1.5	0.0	4.0
Merged-chr13-94005893-3	chr13	94005355	94006355	+	765.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51941.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-12698091-3	chr10	12697585	12698585	+	765.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011682, exon 24 of 74)	exon (NM_011682, exon 24 of 74)	163650.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.0	5.0	1.5	2.0	0.0	5.5
Merged-chr3-96661681-4	chr3	96661195	96662195	+	765.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302471, intron 27 of 29)	intron (NM_001302471, intron 27 of 29)	-8436.0	NM_001356539	213121.0	Mm.39732	NM_001081139	ENSMUSG00000038354	Ankrd35	4732436F15Rik	ankyrin repeat domain 35	protein-coding	13.0	20.0	42.0	14.0	53.0	41.0
Merged-chr15-81851641-2	chr15	81851054	81852054	+	765.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_020507, exon 2 of 2)	exon (NM_020507, exon 2 of 2)	6772.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	1.0	1.0	1.5	5.0	0.0	5.5
Merged-chr13-102052315-3	chr13	102051899	102052899	+	765.700012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-284182.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99818715-5	chr15	99818236	99819236	+	765.700012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113545, intron 4 of 10)	intron (NM_001113545, intron 4 of 10)	1413.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	39.0	120.5	55.5	16.5	67.5	23.5
Merged-chr19-6344951-2	chr19	6344451	6345451	+	765.6999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NR_117093, intron 13 of 30)	intron (NR_117093, intron 13 of 30)	-1529.0	NR_105955	102465598.0		NR_105955	ENSMUSG00000099230	Mir6989	Gm27885|mmu-mir-6989	microRNA 6989	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55230703-4	chr12	55230202	55231202	+	765.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001100109, intron 1 of 15).2	CpG	224.0	NM_001100110	100101806.0	Mm.471968	NM_001100110	ENSMUSG00000079108	Srp54c	E330029E12Rik	signal recognition particle 54C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61466180-3	chr18	61465677	61466677	+	765.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18430.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	0.0	0.0	0.0	1.0	6.0	3.5
Merged-chr15-67301854-1	chr15	67301354	67302354	+	765.666687	f0_balb.idr	intron (NR_045140, intron 5 of 8)	intron (NR_045140, intron 5 of 8)	75085.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	1.5	0.0	2.0	3.0	2.0	3.0
Merged-chr11-121053675-1	chr11	121053175	121054175	+	765.666687	f1_c57bl6.idr	3' UTR (NM_026907, exon 5 of 5)	3' UTR (NM_026907, exon 5 of 5)	9894.0	NM_026907	58210.0	Mm.116986	NM_026907	ENSMUSG00000039364	Sectm1b	1810003C24Rik|K12|Sectm1	secreted and transmembrane 1B	protein-coding	0.0	0.0	6.0	3.0	8.5	2.0
Merged-chr15-55381269-2	chr15	55380769	55381769	+	765.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_181277, intron 11 of 47)	intron (NM_181277, intron 11 of 47)	73519.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137047783-3	chr4	137047275	137048275	+	765.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198248, intron 1 of 18)	intron (NM_198248, intron 1 of 18)	920.0	NM_198248	230848.0	Mm.31068	NM_198248	ENSMUSG00000060862	Zbtb40	BC059177|C230087D24|Gm571|mKIAA0478	zinc finger and BTB domain containing 40	protein-coding	13.5	13.0	27.0	18.0	32.5	11.5
Merged-chr15-73351215-3	chr15	73350736	73351736	+	765.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358046, intron 2 of 34)	intron (NM_001358046, intron 2 of 34)	71955.0	NM_007982	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-57335601-3	chr2	57335117	57336117	+	765.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010274, intron 6 of 16)	intron (NM_010274, intron 6 of 16)	97235.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33779002-2	chr17	33778515	33779515	+	765.666626	f0_balb.idr|f1_c57bl6.idr	intron (NM_020581, intron 3 of 6)	intron (NM_020581, intron 3 of 6)	2560.0	NM_020581	57875.0	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	27.5	29.0	37.5	42.0	38.0	44.5
Merged-chr2-160074856-2	chr2	160074351	160075351	+	765.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	58198.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	0.0	2.5	7.0	0.0	1.5	0.0
Merged-chr10-61145828-2	chr10	61145328	61146328	+	765.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009163, intron 2 of 14)	B1_Mur1|SINE|Alu	1856.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49248152-4	chr13	49247688	49248688	+	765.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001360772, exon 1 of 4)	5' UTR (NM_001360772, exon 1 of 4)	106.0	NM_001360772	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-43367871-4	chr8	43367366	43368366	+	765.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60857.0	NM_009556	22702.0	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	5.0	12.5	8.0	0.5	6.5	9.5
Merged-chr15-27664794-4	chr15	27664309	27665309	+	765.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001242423, exon 2 of 8)	exon (NM_001242423, exon 2 of 8)	16733.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90460502-4	chr3	90460013	90461013	+	765.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008727, intron 7 of 21)	intron (NM_008727, intron 7 of 21)	5353.0	NM_008727	18160.0	Mm.4627	NM_008727	ENSMUSG00000027931	Npr1	AI893888|GC-A|NPR-A|NPRA|Pndr	natriuretic peptide receptor 1	protein-coding	0.0	0.0	7.5	0.0	0.0	0.0
Merged-chr18-42589683-4	chr18	42589216	42590216	+	765.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10064.0	NM_181543	240239.0	Mm.186779	NM_181543	ENSMUSG00000042816	Gpr151	C130082O03Rik|GalRL|PGR7|nGPCR-2037	G protein-coupled receptor 151	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83693311-2	chr8	83692811	83693811	+	765.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_177262, intron 1 of 21)	B3A|SINE|B2	750.0	NM_001199593	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	1.0	3.0	3.5	1.0	2.5	5.0
Merged-chr9-9654477-2	chr9	9653977	9654977	+	765.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-239954.0	NR_105745	102466147.0		NR_105745	ENSMUSG00000098408	Mir6237	Gm27411|mmu-mir-6237	microRNA 6237	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22843821-4	chr8	22843327	22844327	+	765.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-15712.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4236520-4	chr11	4236081	4237081	+	765.5625	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013365)	promoter-TSS (NM_001013365)	-204.0	NM_001013365	18413.0	Mm.131422	NM_001013365	ENSMUSG00000058755	Osm	OncoM	oncostatin M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-31802851-3	chr18	31802357	31803357	+	765.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1200.0	NM_028866	74320.0	Mm.277705	NM_028866	ENSMUSG00000024400	Wdr33	1110001N06Rik|2310011G05Rik|2810021O11Rik|8430413N20Rik|WDC146	WD repeat domain 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30273471-3	chr7	30272970	30273970	+	765.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152437, intron 3 of 32)	intron (NR_152437, intron 3 of 32)	-6624.0	NR_144498	108167416.0	Mm.471845	NR_144498		LOC108167416	-	uncharacterized LOC108167416	ncRNA	4.0	0.0	6.0	4.5	11.5	2.0
Merged-chr8-121908571-2	chr8	121908034	121909034	+	765.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011404)	promoter-TSS (NM_011404)	701.0	NM_001033485	407789.0	Mm.436576	NM_001033485		BC048644	-	cDNA sequence BC048644	protein-coding	0.5	5.0	13.5	6.0	2.0	0.5
Merged-chr2-27304270-2	chr2	27303770	27304770	+	765.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 3 of 29)	intron (NR_133905, intron 3 of 29)	-56967.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-131433653-1	chr6	131433153	131434153	+	765.5	f0_balb.idr	Intergenic	Intergenic	-45203.0	NM_011733	56449.0	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	6.0	0.0	2.0	1.0	15.5	3.0
Merged-chr5-136950460-2	chr5	136949960	136950960	+	765.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-2815.0	NM_001163243	66437.0	Mm.25849	NM_025562	ENSMUSG00000019054	Fis1	2010003O14Rik|Ttc11	fission, mitochondrial 1	protein-coding	7.0	22.0	15.5	29.5	18.0	34.5
Merged-chr5-137338853-3	chr5	137338368	137339368	+	765.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2008.0	NM_001359611	83704.0	Mm.235625	NM_031406	ENSMUSG00000037344	Slc12a9	CIP1	solute carrier family 12 (potassium/chloride transporters), member 9	protein-coding	0.0	4.5	6.0	2.5	4.0	7.5
Merged-chr19-5798251-2	chr19	5797751	5798751	+	765.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_002847, exon 1 of 1)	non-coding (NR_002847, exon 1 of 1)	-2270.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-82858700-2	chr7	82858200	82859200	+	765.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8633.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136111967-2	chr5	136111467	136112467	+	765.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133914)	TTS (NM_133914)	-4724.0	NM_011293	20022.0	Mm.4896	NM_011293	ENSMUSG00000039771	Polr2j	14.5kDa|Polr2i|Rpb11a|Rpo2-4	polymerase (RNA) II (DNA directed) polypeptide J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70651953-2	chr8	70651453	70652453	+	765.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023217, intron 3 of 4)	intron (NM_023217, intron 3 of 4)	7785.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	7.5	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103214372-4	chr11	103213844	103214844	+	765.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177801, intron 1 of 4)	Lx5b|LINE|L1	4088.0	NM_177801	328019.0	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28812082-2	chr7	28811571	28812571	+	765.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177301, intron 1 of 12)	intron (NM_177301, intron 1 of 12)	1181.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128896105-2	chr10	128895605	128896605	+	765.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4387.0	NM_010272	14561.0	Mm.299218	NM_010272	ENSMUSG00000025352	Gdf11	BMP-11|Bmp11	growth differentiation factor 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47733312-2	chr9	47732812	47733812	+	765.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	84896.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	61.0	107.5	122.0	57.0	160.5	103.5
Merged-chr18-80465788-2	chr18	80465288	80466288	+	765.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 1 of 12)	intron (NM_026295, intron 1 of 12)	3879.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	0.0	0.0	3.0	0.0	0.0	2.0
Merged-chr7-130898509-2	chr7	130898009	130899009	+	765.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133942, intron 4 of 9)	B2_Mm2|SINE|B2	-9759.0	NR_106028	102466219.0		NR_106028	ENSMUSG00000104914	Mir7061	mmu-mir-7061	microRNA 7061	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32230207-2	chr11	32229707	32230707	+	765.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010822, intron 3 of 3)	intron (NM_010822, intron 3 of 3)	3702.0	NM_010822	268395.0	Mm.263161	NM_010822	ENSMUSG00000020287	Mpg	9830006D05|AI326268|APNG|Aag|Mid1	N-methylpurine-DNA glycosylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61370517-4	chr10	61370019	61371019	+	765.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013753, intron 1 of 19)	intron (NM_013753, intron 1 of 19)	13004.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36275264-2	chr1	36274764	36275764	+	765.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1839.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95843352-2	chr4	95842852	95843852	+	765.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113412, intron 12 of 15)	intron (NM_001113412, intron 12 of 15)	123683.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	3.5	0.0	1.5	3.5	0.0	1.5
Merged-chr12-55498703-2	chr12	55498203	55499203	+	765.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6056.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90439843-2	chr2	90439343	90440343	+	765.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 23 of 23)	intron (NM_008982, intron 23 of 23)	39203.0	NM_146263	258330.0	Mm.330392	NM_146263	ENSMUSG00000082980	Olfr1274-ps	GA_x5J8B7W2BV0-3116-4045|MOR228-4|MOR228-5|Olfr1274	olfactory receptor 1274, pseudogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73946067-2	chr17	73945567	73946567	+	765.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 1 of 35)	intron (NM_011723, intron 1 of 35)	4129.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-116922476-2	chr8	116921976	116922976	+	765.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028131, intron 2 of 11)	intron (NM_028131, intron 2 of 11)	736.0	NM_028131	72155.0	Mm.23185	NM_028131	ENSMUSG00000031756	Cenpn	2610510J17Rik|AI426416|AW545024	centromere protein N	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24890523-2	chr17	24890023	24891023	+	765.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152137, intron 3 of 5)	intron (NR_152137, intron 3 of 5)	3042.0	NM_027141	79043.0	Mm.274794	NM_027141	ENSMUSG00000024160	Spsb3	2310012N15Rik|3300001M01Rik|SSB3|Tce1|mKIAA4204	splA/ryanodine receptor domain and SOCS box containing 3	protein-coding	0.0	1.5	0.0	0.0	1.5	2.5
Merged-chr16-22264282-2	chr16	22263782	22264782	+	765.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330555, intron 1 of 9)	intron (NM_001330555, intron 1 of 9)	1723.0	NM_001330554	20462.0	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54579000-2	chr13	54578500	54579500	+	765.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019968, intron 3 of 3)	intron (NM_019968, intron 3 of 3)	3987.0	NM_019968	56795.0	Mm.89484	NM_019968	ENSMUSG00000025870	Arl10	Arl10a|Arm1	ADP-ribosylation factor-like 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25110098-2	chr7	25109598	25110598	+	765.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163556, intron 5 of 13)	intron (NM_001163556, intron 5 of 13)	-12923.0	NR_105855	102465968.0		NR_105855	ENSMUSG00000098441	Mir6537	Gm27808|mmu-mir-6537	microRNA 6537	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60233551-2	chr10	60233051	60234051	+	765.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-14291.0	NM_016803	53374.0	Mm.12866	NM_016803	ENSMUSG00000057337	Chst3	C6ST|C6ST-1|GST-0	carbohydrate (chondroitin 6/keratan) sulfotransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-92743538-3	chr7	92743042	92744042	+	765.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029494, intron 1 of 4)	intron (NM_029494, intron 1 of 4)	1828.0	NM_029494	75985.0	Mm.323004	NM_029494	ENSMUSG00000030643	Rab30	5033421K01Rik|AI323892|Rsb30	RAB30, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25211975-2	chr12	25211475	25212475	+	765.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82801.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31801263-2	chr2	31800763	31801763	+	765.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001283045, exon 11 of 11)	exon (NM_001283045, exon 11 of 11)	9317.0	NM_183424	227717.0	Mm.185027	NM_183424	ENSMUSG00000043102	Qrfp	P518	pyroglutamylated RFamide peptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95736423-2	chr3	95735923	95736923	+	765.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007899, intron 7 of 10)	(CA)n|Simple_repeat|Simple_repeat	-1450.0	NR_105981	102466787.0		NR_105981	ENSMUSG00000098737	Mir7014	Gm27837|mmu-mir-7014	microRNA 7014	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11106999-2	chr8	11106499	11107499	+	765.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-98569.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126084954-2	chr4	126084491	126085491	+	765.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172701, intron 7 of 9)	intron (NM_172701, intron 7 of 9)	-11662.0	NM_001163266	116748.0	Mm.41865	NM_138721	ENSMUSG00000050188	Lsm10	-	U7 snRNP-specific Sm-like protein LSM10	protein-coding	2.0	0.0	0.0	1.0	0.0	0.0
Merged-chr6-100298589-2	chr6	100298089	100299089	+	765.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11231.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6163348-2	chr2	6162848	6163848	+	765.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29903.0	NR_040333	320132.0	Mm.445891	NR_040333	ENSMUSG00000087125	A230108P19Rik	-	RIKEN cDNA A230108P19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37443755-2	chr19	37443254	37444254	+	765.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8913.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	0.5	0.5	3.0	10.5	9.0	5.0
Merged-chr1-171117121-2	chr1	171116621	171117621	+	765.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-4540.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88172354-2	chr3	88171854	88172854	+	765.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133665)	TTS (NM_133665)	5431.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27748904-2	chr2	27748404	27749404	+	765.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 5 of 9)	intron (NM_001290481, intron 5 of 9)	38321.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35244417-2	chr2	35243917	35244917	+	765.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11942.0	NM_001206367	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-119240781-1	chr5	119240281	119241281	+	765.5	f0_balb.idr	Intergenic	Intergenic	-40763.0	NR_046033	665194.0	Mm.491047	NR_046033	ENSMUSG00000107334	Gm7538	EG665194	predicted gene 7538	ncRNA	0.0	0.0	1.5	0.0	0.0	4.5
Merged-chr7-127915479-2	chr7	127914979	127915979	+	765.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026370, exon 3 of 11)	exon (NM_026370, exon 3 of 11)	2465.0	NM_001360699	67773.0	Mm.425492	NM_026370	ENSMUSG00000030801	Kat8	2010203C02Rik|5830450F21Rik|D7Ertd629e|MOF|MYST-1|Myst1	K(lysine) acetyltransferase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26918705-2	chr2	26918205	26919205	+	765.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013678, intron 3 of 5)	intron (NM_013678, intron 3 of 5)	-2175.0	NM_013677	20930.0	Mm.347512	NM_013677	ENSMUSG00000015790	Surf1	0610010F23Rik|Surf-1	surfeit gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69086825-2	chr11	69086325	69087325	+	765.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1703.0	NM_009497	22318.0	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|Vamp-2|sybII	vesicle-associated membrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120720629-3	chr8	120720147	120721147	+	765.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15711.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-18845847-5	chr6	18845363	18846363	+	765.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	-2772.0	NM_133939	76522.0	Mm.275158	NM_133939	ENSMUSG00000044155	Lsm8	2010003I05Rik|AW214405|Naa38	LSM8 homolog, U6 small nuclear RNA associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165643896-3	chr1	165643401	165644401	+	765.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9360.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-54566961-4	chr9	54566461	54567461	+	765.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6882.0	NM_019686	56506.0	Mm.42192	NM_019686	ENSMUSG00000037493	Cib2	2810434I23Rik|AI449053	calcium and integrin binding family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50353400-3	chr14	50352890	50353890	+	765.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-4524.0	NM_205819	239081.0	Mm.291512	NM_205819	ENSMUSG00000051969	Tlr11	Gm287	toll-like receptor 11	protein-coding	4.5	7.5	14.0	1.0	14.5	2.0
Merged-chr3-8767041-3	chr3	8766562	8767562	+	765.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-100024.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3661422-4	chr12	3660857	3661857	+	765.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 8 of 17)	intron (NM_001162465, intron 8 of 17)	88373.0	NM_007886	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-30789779-4	chr10	30789314	30790314	+	765.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 1 of 14)	intron (NM_001358842, intron 1 of 14)	13512.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128590433-3	chr8	128589899	128590899	+	765.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-95255.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0.0	4.0	0.0	2.0	1.0	0.0
Merged-chr5-138254875-2	chr5	138254375	138255375	+	765.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081108)	promoter-TSS (NM_001081108)	-607.0	NM_001081108	66096.0	Mm.206901	NM_001081108	ENSMUSG00000050552	Lamtor4	0910001L09Rik|AV006840	late endosomal/lysosomal adaptor, MAPK and MTOR activator 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-89404499-2	chr8	89403995	89404995	+	765.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-360333.0	NM_021390	58198.0	Mm.214361	NM_021390	ENSMUSG00000031665	Sall1	Msal-3	spalt like transcription factor 1	protein-coding	11.0	0.5	6.0	6.5	3.0	4.0
Merged-chr1-165781686-2	chr1	165781186	165782186	+	765.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6995.0	NM_001113393	12503.0	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34628292-3	chr17	34627779	34628779	+	765.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302394)	promoter-TSS (NM_001302394)	0.0	NM_001302393	54397.0	Mm.373627	NM_019441	ENSMUSG00000015474	Ppt2	0610007M19Rik|AA672937	palmitoyl-protein thioesterase 2	protein-coding	6.5	20.0	13.5	8.0	33.5	14.0
Merged-chr14-74733566-2	chr14	74733066	74734066	+	765.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285423, intron 1 of 8)	intron (NM_001285423, intron 1 of 8)	1269.0	NM_016903	13885.0	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19103212-4	chr10	19102706	19103706	+	765.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38543.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	6.0	18.5	8.0	1.5	6.5	16.0
Merged-chr4-62582693-3	chr4	62582179	62583179	+	765.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019492, intron 3 of 19)	intron (NM_019492, intron 3 of 19)	22832.0	NM_019492	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124860403-2	chr6	124859903	124860903	+	765.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_013533, intron 2 of 4)	intron (NM_013533, intron 2 of 4)	-2716.0	NM_013534	14789.0	Mm.35708	NM_013534	ENSMUSG00000023191	P3h3	BC016431|Grcb|Leprel2	prolyl 3-hydroxylase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-53990063-3	chr17	53989560	53990560	+	765.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018751, intron 1 of 7)	intron (NM_018751, intron 1 of 7)	571.0	NM_018751	20888.0	Mm.10108	NM_018751	ENSMUSG00000023943	Sult1c1	(PST)G|P-SULT|ST1C1|Stp2|Sult1a2|mOLFST	sulfotransferase family, cytosolic, 1C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129545314-3	chr6	129544813	129545813	+	765.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12029.0	NR_045270	100504641.0	Mm.398286	NR_045270	ENSMUSG00000097675	1700101I11Rik	-	RIKEN cDNA 1700101I11 gene	ncRNA	0.5	0.0	0.0	1.0	1.0	0.0
Merged-chr2-75732150-3	chr2	75731657	75732657	+	765.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27494.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	114.0	303.5	190.0	107.0	209.5	109.5
Merged-chr19-5424347-1	chr19	5423847	5424847	+	765.333313	f1_c57bl6.idr	promoter-TSS (NM_001256515)	promoter-TSS (NM_001256515)	632.0	NM_024176	66556.0	Mm.275446	NM_024176	ENSMUSG00000024914	Drap1	2310074H19Rik|NC2-alpha	Dr1 associated protein 1 (negative cofactor 2 alpha)	protein-coding	16.0	42.5	22.5	7.5	14.5	20.0
Merged-chr11-117769147-3	chr11	117768644	117769644	+	765.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_154387, exon 15 of 19)	non-coding (NR_154387, exon 15 of 19)	10504.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5956882-4	chr19	5956379	5957379	+	765.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 4 of 17)	intron (NM_001164057, intron 4 of 17)	7327.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-51517606-3	chr1	51517157	51518157	+	765.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151621, intron 3 of 3)	intron (NR_151621, intron 3 of 3)	-39258.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61336282-3	chr10	61335813	61336813	+	765.255554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013753, intron 18 of 19)	intron (NM_013753, intron 18 of 19)	38477.0	NM_011073	18646.0	Mm.240313	NM_011073	ENSMUSG00000037202	Prf1	Pfn|Pfp|Prf-1	perforin 1 (pore forming protein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116006457-2	chr6	116005957	116006957	+	765.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	-11452.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116098740-2	chr9	116098260	116099260	+	765.25	f0_balb.idr|f0_c57.idr	intron (NM_029575, intron 5 of 6)	intron (NM_029575, intron 5 of 6)	76603.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	22.0	39.5	75.0	31.0	51.5	83.5
Merged-chr3-108878606-4	chr3	108878044	108879044	+	765.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177091, intron 4 of 12)	intron (NM_177091, intron 4 of 12)	11464.0	NM_177091	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	21.5	37.5	26.5	19.0	32.0	23.0
Merged-chr11-83734337-2	chr11	83733837	83734837	+	765.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12603.0	NM_183249	66107.0	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-83691007-2	chr12	83690533	83691533	+	765.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008943, intron 1 of 11)	B4A|SINE|B4	2470.0	NM_008943	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-79256272-2	chr18	79255772	79256772	+	765.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-146881.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94596593-2	chr11	94596099	94597099	+	765.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_153807, intron 1 of 15)	intron (NM_153807, intron 1 of 15)	5187.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	0.0	0.5	1.0	0.5	5.5	1.5
Merged-chr9-63990085-3	chr9	63989582	63990582	+	765.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	31977.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-66002155-3	chr18	66001676	66002676	+	765.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027400, intron 1 of 13)	intron (NM_027400, intron 1 of 13)	459.0	NM_027400	70361.0	Mm.290857	NM_027400	ENSMUSG00000041891	Lman1	2610020P13Rik|AI326273|AU043785|C730041J05|ERGIC53|F5F8D|MCFD1|MR60|P58|gp58	lectin, mannose-binding, 1	protein-coding	3.5	2.5	1.0	1.0	6.0	6.0
Merged-chr17-71531694-3	chr17	71531197	71532197	+	765.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4840.0	NM_023294	67052.0	Mm.225956	NM_023294	ENSMUSG00000024056	Ndc80	2610020P18Rik|AV139730|HEC|HEC1|Kntc2	NDC80 kinetochore complex component	protein-coding	3.0	0.5	7.5	0.0	0.5	1.0
Merged-chr5-99325027-5	chr5	99324610	99325610	+	765.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-72183.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	12.0	19.0	29.0	28.5	119.5	54.5
Merged-chr5-66149375-7	chr5	66148879	66149879	+	765.195251	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	B1F2|SINE|Alu	1599.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	109.0	170.5	91.0	87.5	143.5	93.5
Merged-chr4-135817510-2	chr4	135817010	135818010	+	765.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38561.0	NM_001284196	14105.0	Mm.10229	NM_010178	ENSMUSG00000028676	Srsf10	FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-35536273-4	chr6	35535776	35536776	+	765.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008098, intron 1 of 3)	intron (NM_008098, intron 1 of 3)	3612.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-142606183-3	chr2	142605682	142606682	+	765.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	295282.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33966356-3	chr16	33965878	33966878	+	765.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009471, intron 1 of 5)	intron (NM_009471, intron 1 of 5)	660.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20728257-2	chr13	20727759	20728759	+	765.166626	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65854.0	NM_001281854	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	4.0	10.0	2.5	3.0	7.0	1.0
Merged-chr19-21034254-2	chr19	21033754	21034754	+	765.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70456.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	1.5	0.0	4.5	2.0	0.5	3.5
Merged-chr6-117825594-4	chr6	117825093	117826093	+	765.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER91B|DNA|hAT-Tip100	-15588.0	NM_001346649	232337.0	Mm.290847	NM_177684	ENSMUSG00000059689	Zfp637	AI646709|BC021601|Znf32	zinc finger protein 637	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5178816-3	chr19	5178326	5179326	+	765.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153129, intron 1 of 23)	RLTR13D3|LTR|ERVK	-60418.0	NM_008451	16594.0	Mm.271648	NM_008451	ENSMUSG00000024862	Klc2	8030455F02Rik|AW212649|KLC 2|KLC-2	kinesin light chain 2	protein-coding	0.0	0.0	5.0	1.0	4.0	1.0
Merged-chr13-8713602-3	chr13	8713102	8714102	+	765.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001289530, exon 7 of 10)	exon (NM_001289530, exon 7 of 10)	157442.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86415612-2	chr1	86415112	86416112	+	765.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10717.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34397476-2	chr17	34396976	34397976	+	765.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1344.0	NM_001001177	407788.0	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	20.5	32.0	9.5	4.0	35.0	17.0
Merged-chr10-59109223-3	chr10	59108744	59109744	+	765.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172788, intron 8 of 9)	ERVL-B4-int|LTR|ERVL	112603.0	NM_001024911	103080.0	Mm.346842	NM_001024910	ENSMUSG00000019917	Sept10	4921515A04Rik|9430099J10Rik|AA408298|AI874685	septin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165683536-4	chr1	165683039	165684039	+	765.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	B3A|SINE|B2	24555.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60280517-4	chr10	60280046	60281046	+	765.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011179, intron 1 of 14)	intron (NM_011179, intron 1 of 14)	2918.0	NM_001146121	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120540082-3	chr6	120539580	120540580	+	765.022217	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8781.0	NM_144815	214932.0	Mm.255322	NM_144815	ENSMUSG00000058979	Hdhd5	A930002G03Rik|Cecr5	haloacid dehalogenase like hydrolase domain containing 5	protein-coding	0.0	7.0	0.5	0.0	0.0	5.5
Merged-chr11-9347869-4	chr11	9347428	9348428	+	765.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 28 of 61)	MIRb|SINE|MIR	155986.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	19.0	9.5	6.0	2.5	11.0	2.0
Merged-chr12-64913091-1	chr12	64912591	64913591	+	765.0	f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-4820.0	NM_001025605	217648.0	Mm.341586	NM_001025605	ENSMUSG00000047227	Gm527	-	predicted gene 527	protein-coding	1.5	0.0	3.0	0.0	5.5	0.0
Merged-chr1-77827572-1	chr1	77827072	77828072	+	765.0	f0_balb.idr	Intergenic	Intergenic	-312484.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66342978-2	chr7	66342478	66343478	+	765.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 2 of 33)	intron (NM_146191, intron 2 of 33)	38746.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	17.0	67.5	46.0	21.5	76.5	22.5
Merged-chr14-55768032-5	chr14	55767487	55768487	+	765.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008519, exon 2 of 2)	exon (NM_008519, exon 2 of 2)	2025.0	NM_008519	16995.0	Mm.20853	NM_008519	ENSMUSG00000046908	Ltb4r1	BLT1|BLTR|Ltb4r|mBLTR	leukotriene B4 receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21160942-2	chr9	21160442	21161442	+	765.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-4772.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-42297998-2	chr6	42297498	42298498	+	765.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013491, intron 7 of 22)	intron (NM_013491, intron 7 of 22)	11313.0	NM_013491	12723.0	Mm.386757	NM_013491	ENSMUSG00000029862	Clcn1	Clc-1|Clc1|SMCC1|adr|mto|myotonia|nmf355	chloride channel, voltage-sensitive 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-14930409-3	chr4	14929913	14930913	+	765.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243100)	promoter-TSS (NM_001243100)	-228.0	NM_001243100	100038514.0	Mm.331495	NM_001243100		Gm11837	-	predicted gene 11837	protein-coding	0.0	0.0	1.0	2.0	0.0	0.5
Merged-chr2-24365466-3	chr2	24364939	24365939	+	765.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-2236.0	NM_001355231	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-55541813-2	chr9	55541313	55542313	+	765.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027397, intron 1 of 5)	CpG	664.0	NM_027397	104360.0	Mm.273996	NM_027397	ENSMUSG00000032318	Isl2	3110001N10Rik	insulin related protein 2 (islet 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-39643713-3	chr8	39643217	39644217	+	765.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-1039.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	55.0	68.5	72.0	41.5	71.5	69.0
Merged-chr2-119541859-1	chr2	119541359	119542359	+	765.0	f1_balb.idr	intron (NM_172857, intron 2 of 12)	B1_Mur3|SINE|Alu	5768.0	NM_172857	241624.0	Mm.212773	NM_172857	ENSMUSG00000048647	Exd1	4932702D22Rik|Exdl1|mExd1	exonuclease 3'-5' domain containing 1	protein-coding	0.5	0.0	2.0	13.0	1.5	10.0
Merged-chr6-124833093-2	chr6	124832593	124833593	+	765.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013538, exon 6 of 6)	exon (NM_013538, exon 6 of 6)	2917.0	NM_013538	14793.0	Mm.285723	NM_013538	ENSMUSG00000023505	Cdca3	2410005A12Rik|C8|Grcc8|Tome-1	cell division cycle associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65581876-2	chr9	65581355	65582355	+	765.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-1768.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	1.0	6.0	6.0	0.0	6.0	9.0
Merged-chr4-133852791-1	chr4	133852291	133853291	+	765.0	f1_balb.idr	intron (NM_009097, intron 17 of 21)	intron (NM_009097, intron 17 of 21)	21940.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	1.0	6.5	4.0	3.5	7.0	5.5
Merged-chr1-154062044-3	chr1	154061526	154062526	+	765.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-139161.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134119447-2	chr6	134118915	134119915	+	765.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	Lx8|LINE|L1	83715.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	29.5	13.5	14.5	9.5	2.5	1.0
Merged-chr18-56407564-3	chr18	56407073	56408073	+	765.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360917, intron 1 of 13)	intron (NM_001360917, intron 1 of 13)	7233.0	NM_001360917	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44325405-3	chr9	44324884	44325884	+	765.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1461.0	NM_007875	13478.0	Mm.18353	NM_007875	ENSMUSG00000032123	Dpagt1	AU021132|Dpagt2|GPT|Gnpta	dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10702464-2	chr17	10701964	10702964	+	765.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	GA-rich|Low_complexity|Low_complexity	137727.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5354047-2	chr19	5353547	5354547	+	765.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4473.0	NM_028623	73720.0	Mm.36816	NM_028623	ENSMUSG00000024846	Cst6	1110017E11Rik|N28197|ichq	cystatin E/M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5868336-2	chr13	5867836	5868836	+	765.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011803, exon 4 of 4)	3' UTR (NM_011803, exon 4 of 4)	6847.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27259674-2	chr3	27259174	27260174	+	765.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS_Mus|LTR|ERV1	-57403.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8814959-1	chr17	8814459	8815459	+	765.0	f1_c57bl6.idr	intron (NM_011866, intron 1 of 21)	intron (NM_011866, intron 1 of 21)	13214.0	NM_011866	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr18-61210443-2	chr18	61209943	61210943	+	765.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007885, intron 1 of 3)	intron (NM_007885, intron 1 of 3)	1153.0	NM_007885	13521.0	Mm.24803	NM_007885	ENSMUSG00000034320	Slc26a2	Dtd|ST-OB	solute carrier family 26 (sulfate transporter), member 2	protein-coding	4.0	0.0	4.5	8.5	0.0	0.0
Merged-chr1-193198550-2	chr1	193198050	193199050	+	765.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153137, intron 2 of 15)	intron (NM_153137, intron 2 of 15)	2996.0	NM_153137	215243.0	Mm.261259	NM_153137	ENSMUSG00000037318	Traf3ip3	6030423D04Rik|AI115021|T3jam	TRAF3 interacting protein 3	protein-coding	4.0	0.0	1.0	3.5	0.0	0.0
Merged-chr1-58022500-2	chr1	58022000	58023000	+	765.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177867, intron 5 of 5)	RMER15|LTR|ERVL	-7469.0	NM_009676	11761.0	Mm.26787	NM_009676	ENSMUSG00000063558	Aox1	AI196512|AI255253|Ao|Aox-1|Aox-2|Aox2|Moro|Ro	aldehyde oxidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27379089-2	chr14	27378589	27379589	+	765.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 3 of 10)	intron (NM_027871, intron 3 of 10)	17700.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	37.5	77.0	40.5	36.5	69.5	92.0
Merged-chr7-55920879-4	chr7	55920345	55921345	+	765.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 24 of 30)	MTC|LTR|ERVL-MaLR	41648.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	9.5	29.0	21.5	5.5	15.5	11.5
Merged-chr16-80965930-2	chr16	80965430	80966430	+	765.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-234767.0	NM_001113208	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64078534-2	chr7	64078034	64079034	+	765.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75301.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69043924-3	chr11	69043421	69044421	+	765.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1716.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123900054-1	chr5	123899554	123900554	+	765.0	f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-7221.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	0.0	2.0	1.5	13.0	1.0	0.5
Merged-chr15-30614589-3	chr15	30614134	30615134	+	765.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-424492.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	18.0	0.0	3.0	6.5	10.5	7.0
Merged-chr7-27541654-2	chr7	27541154	27542154	+	765.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317355, intron 6 of 13)	intron (NM_001317355, intron 6 of 13)	11564.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11530949-1	chr2	11530449	11531449	+	765.0	f1_balb.idr	intron (NM_001177758, intron 1 of 14)	B1_Mur3|SINE|Alu	22980.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-51593940-2	chr12	51593440	51594440	+	765.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198835, intron 3 of 11)	CpG-3156	599.0	NM_001198835	12810.0	Mm.21325	NM_007728	ENSMUSG00000020953	Coch	AW122937|Coch-5B2|D12H14S564E	cochlin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8775108-2	chr4	8774608	8775608	+	765.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 1 of 36)	L2|LINE|L2	23784.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65360142-2	chr9	65359642	65360642	+	765.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111145)	promoter-TSS (NM_001111145)	-918.0	NM_001111145	208080.0	Mm.291862	NM_001111145	ENSMUSG00000086228	Ubap1l	Gm514	ubiquitin-associated protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147075764-1	chr5	147075264	147076264	+	765.0	f1_balb.idr	intron (NM_080795, intron 1 of 9)	PB1D9|SINE|Alu	808.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	11.5	4.5	15.0	7.0	18.5	17.5
Merged-chr6-28424531-2	chr6	28424031	28425031	+	765.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007480, intron 2 of 5)	intron (NM_007480, intron 2 of 5)	927.0	NM_007480	11844.0	Mm.389075	NM_007480	ENSMUSG00000020440	Arf5	-	ADP-ribosylation factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70973733-2	chr17	70973230	70974230	+	765.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023402)	TTS (NM_023402)	16786.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	2.5	3.0	5.0	3.0	17.5	9.5
Merged-chr11-103053387-1	chr11	103052887	103053887	+	765.0	f0_balb.idr	intron (NM_008707, intron 4 of 11)	B3|SINE|B2	24844.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134230272-2	chr5	134229772	134230772	+	765.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286037)	promoter-TSS (NM_001286037)	-647.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70781017-2	chr8	70780467	70781467	+	765.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_199308, exon 23 of 26)	exon (NM_199308, exon 23 of 26)	4105.0	NR_029440	72093.0	Mm.271208	NR_029440		2010320M18Rik	-	RIKEN cDNA 2010320M18 gene	ncRNA	0.0	5.0	3.0	0.0	3.0	4.5
Merged-chr8-110847501-1	chr8	110847001	110848001	+	765.0	f0_balb.idr	promoter-TSS (NM_133953)	promoter-TSS (NM_133953)	477.0	NM_133973	102339.0	Mm.272930	NM_133973	ENSMUSG00000031753	Cog4	AW554810|D8Ertd515e	component of oligomeric golgi complex 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3525871-1	chr4	3525371	3526371	+	765.0	f1_c57bl6.idr	Intergenic	Intergenic	-11219.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	4.5	2.0	4.5	5.0	0.0	2.0
Merged-chr4-117213154-2	chr4	117212654	117213654	+	765.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001145637)	TTS (NM_001145637)	-30530.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-25505231-5	chr18	25504630	25505630	+	765.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362304, intron 3 of 12)	intron (NM_001362304, intron 3 of 12)	174618.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70706383-2	chr17	70705883	70706883	+	765.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360665, intron 9 of 14)	B4|SINE|B4	140394.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	3.5	2.5	3.0	0.0	0.0	1.5
Merged-chr13-20468841-2	chr13	20468341	20469341	+	765.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 16 of 21)	intron (NM_080288, intron 16 of 21)	-4149.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	2.5	0.0	0.0	0.5	0.0	1.5
Merged-chr2-180274470-2	chr2	180273970	180274970	+	765.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1005.0	NM_145851	252966.0	Mm.386884	NM_145851	ENSMUSG00000038990	Cables2	ik3-2	CDK5 and Abl enzyme substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-148867776-1	chr3	148867276	148868276	+	765.0	f0_balb.idr	intron (NM_001081298, intron 2 of 23)	intron (NM_001081298, intron 2 of 23)	86859.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.0	6.0	4.0	3.5	3.0	2.0
Merged-chr3-82795753-3	chr3	82795217	82796217	+	765.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3e|LINE|L1	80766.0	NM_001277170	633285.0	Mm.265114	NM_001146328	ENSMUSG00000033882	Rbm46	EG633285|Gm761	RNA binding motif protein 46	protein-coding	0.0	3.5	5.0	6.5	3.5	1.5
Merged-chr5-112195946-2	chr5	112195446	112196446	+	765.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-10817.0	NR_045377	75569.0	Mm.243721	NR_045377	ENSMUSG00000101683	1700028D13Rik	-	RIKEN cDNA 1700028D13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36757255-4	chr5	36756753	36757753	+	765.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-8574.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22163228-2	chr16	22162728	22163728	+	765.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183029)	promoter-TSS (NM_183029)	71.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31217846-2	chr14	31217346	31218346	+	765.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025379)	promoter-TSS (NM_001025379)	-27.0	NM_001025379	218877.0	Mm.27812	NM_001025379	ENSMUSG00000021904	Sema3g	AK129018	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79882899-2	chr15	79882405	79883405	+	765.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9503.0	NM_001160415	80287.0	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Gm20117|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	7.5	13.5	13.5	12.5	16.0	17.5
Merged-chr4-135273533-2	chr4	135273033	135274033	+	765.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013885)	promoter-TSS (NM_013885)	-773.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73620897-3	chr13	73620408	73621408	+	764.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_146047)	TTS (NM_146047)	-6003.0	NM_001362387	21752.0	Mm.10109	NM_009354	ENSMUSG00000021611	Tert	EST2|TCS1|TP2|TR|TRT	telomerase reverse transcriptase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117140522-3	chr5	117140010	117141010	+	764.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	6922.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	0.0	1.0	3.5	2.0	1.0	12.5
Merged-chr15-64260302-4	chr15	64259852	64260852	+	764.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	RMER1B|Other|Other	52321.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58145435-4	chr15	58144860	58145860	+	764.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029734, intron 1 of 5)	intron (NM_029734, intron 1 of 5)	3994.0	NM_001326599	76773.0	Mm.26771	NM_029734	ENSMUSG00000022359	Wdyhv1	2410187C16Rik|AU014961|AW550036|Ntaq1	WDYHV motif containing 1	protein-coding	42.0	14.0	13.0	24.0	81.5	42.0
Merged-chr6-32570103-3	chr6	32569609	32570609	+	764.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 1 of 31)	intron (NM_175750, intron 1 of 31)	18083.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100879810-3	chr7	100879311	100880311	+	764.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081116, intron 13 of 20)	intron (NM_001081116, intron 13 of 20)	2598.0	NR_037289	100526508.0		NR_037289	ENSMUSG00000093296	Mir3102	mmu-mir-3102	microRNA 3102	ncRNA	3.5	0.0	0.5	1.0	0.0	0.0
Merged-chr14-21662597-3	chr14	21662091	21663091	+	764.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017479, intron 15 of 16)	intron (NM_017479, intron 15 of 16)	51985.0	NM_001013826	435391.0	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86950424-4	chr17	86949941	86950941	+	764.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2554.0	NM_029121	74915.0	Mm.159369	NM_029121	ENSMUSG00000053375	Atp6v1e2	4930500C14Rik|Atp6e1|E1	ATPase, H+ transporting, lysosomal V1 subunit E2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113602081-4	chr13	113601587	113602587	+	764.854187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	ORR1B2|LTR|ERVL-MaLR	16477.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-24900315-2	chr19	24899821	24900821	+	764.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_008022, exon 1 of 1)	exon (NM_008022, exon 1 of 1)	988.0	NM_008022	14237.0	Mm.377080	NM_008022	ENSMUSG00000051490	Foxd4	FREAC5|Fkh2	forkhead box D4	protein-coding	3.0	0.0	2.5	0.0	4.0	1.0
Merged-chr8-71299896-2	chr8	71299434	71300434	+	764.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	27220.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	0.0	11.0	3.0	1.5	9.5	3.5
Merged-chr17-17608799-2	chr17	17608298	17609298	+	764.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	15691.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	3.5	36.5	5.5	7.5	11.0	6.5
Merged-chr6-25027218-2	chr6	25026718	25027718	+	764.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71093.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	0.5	0.0	0.0	0.0	0.0	1.0
Merged-chr1-170172836-2	chr1	170172336	170173336	+	764.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133806, intron 1 of 10)	intron (NM_133806, intron 1 of 10)	2128.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22358576-3	chr16	22358052	22359052	+	764.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63564.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-37033512-3	chr14	37033056	37034056	+	764.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15458.0	NM_001301694	57811.0	Mm.20460	NM_021340	ENSMUSG00000021804	Rgr	-	retinal G protein coupled receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-26762215-2	chr10	26761715	26762715	+	764.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10297.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95919032-3	chr10	95918493	95919493	+	764.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21670.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61511532-3	chr9	61511024	61512024	+	764.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	139158.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62137923-3	chr15	62137386	62138386	+	764.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 2 of 6)	intron (NR_132746, intron 2 of 6)	81565.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127471618-2	chr10	127471118	127472118	+	764.8000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359245, intron 11 of 23)	intron (NM_001359245, intron 11 of 23)	-30068.0	NM_001359751	237611.0	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	0.0	2.5	0.0	1.5	0.0	0.5
Merged-chr17-30070880-2	chr17	30070380	30071380	+	764.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356265, intron 2 of 5)	intron (NM_001356265, intron 2 of 5)	65841.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9705289-3	chr3	9704766	9705766	+	764.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 3 of 7)	intron (NM_053182, intron 3 of 7)	-95181.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87264142-10	chr17	87263622	87264622	+	764.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139295, intron 1 of 3)	intron (NM_139295, intron 1 of 3)	1825.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	82.5	220.0	149.0	120.5	149.5	139.0
Merged-chr6-38066369-3	chr6	38065872	38066872	+	764.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080467, intron 14 of 20)	intron (NM_080467, intron 14 of 20)	-19376.0	NM_177200	320590.0	Mm.197449	NM_177200	ENSMUSG00000029830	Svopl	9430071P14Rik	SV2 related protein homolog (rat)-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35827955-3	chr12	35827417	35828417	+	764.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-97704.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	0.0	6.0	1.5	2.5	0.5	2.0
Merged-chr12-102422939-4	chr12	102422429	102423429	+	764.776794	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 2 of 13)	L1MB7|LINE|L1	16884.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	8.5	33.5	12.5	15.5	40.5	15.0
Merged-chr10-80596285-4	chr10	80595770	80596770	+	764.770813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5929.0	NM_145421	216169.0	Mm.29802	NM_145421	ENSMUSG00000003346	Abhd17a	1700013O15Rik|BC005632|D10Bwg1364e|Fam108a	abhydrolase domain containing 17A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119156240-4	chr2	119155733	119156733	+	764.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033136, intron 2 of 12)	intron (NM_001033136, intron 2 of 12)	801.0	NM_001033136	67809.0	Mm.475909	NM_001033136	ENSMUSG00000070730	Rmdn3	1200015F23Rik|AI131757|Fam82a2|Ptpip51|RMD-3|Rmd3	regulator of microtubule dynamics 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158172784-2	chr2	158172270	158173270	+	764.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB-int|LTR|ERVL-MaLR	-19238.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88595043-2	chr5	88594543	88595543	+	764.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 2 of 13)	intron (NM_001359208, intron 2 of 13)	11530.0	NM_001359209	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123999274-2	chr5	123998774	123999774	+	764.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_145070, intron 20 of 31)	intron (NM_145070, intron 20 of 31)	2422.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-13739050-4	chr17	13738506	13739506	+	764.737488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022311, intron 1 of 2)	intron (NM_022311, intron 1 of 2)	-21535.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	0.0	2.5	1.0	0.0	2.5	3.0
Merged-chr1-168431565-4	chr1	168431118	168432118	+	764.720825	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001291509, exon 1 of 7)	5' UTR (NM_001291509, exon 1 of 7)	551.0	NM_001291509	18514.0	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127832724-4	chr2	127832221	127833221	+	764.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113179)	promoter-TSS (NM_001113179)	-862.0	NM_009772	12235.0	Mm.2185	NM_009772	ENSMUSG00000027379	Bub1	AL022991|Bub1a|C80208|D2Xrf87	BUB1, mitotic checkpoint serine/threonine kinase	protein-coding	5.0	1.5	4.0	5.0	2.5	5.0
Merged-chr8-25978021-4	chr8	25977533	25978533	+	764.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1289.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	53.0	149.0	96.0	14.0	39.0	39.0
Merged-chr2-58919881-3	chr2	58919391	58920391	+	764.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 10 of 13)	L2a|LINE|L2	164707.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50885315-3	chr9	50884764	50885764	+	764.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286553, intron 15 of 16)	intron (NM_001286553, intron 15 of 16)	28340.0	NM_001286553	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34032418-3	chr11	34031889	34032889	+	764.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-14539.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102463280-2	chr12	102462819	102463819	+	764.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5815.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	0.0	6.0	6.5	15.5	1.5	3.0
Merged-chr4-123919029-2	chr4	123918529	123919529	+	764.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_017475, intron 1 of 6)	ID_B1|SINE|B4	1596.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	3.0	29.5	15.0	29.5	10.0	12.0
Merged-chr6-114927675-2	chr6	114927175	114928175	+	764.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	B3|SINE|B2	-5854.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44353751-2	chr7	44353251	44354251	+	764.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001034115, exon 24 of 25)	exon (NM_001034115, exon 24 of 25)	21279.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149990482-4	chr4	149989949	149990949	+	764.662476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291004, intron 3 of 4)	intron (NM_001291004, intron 3 of 4)	12787.0	NM_001291004	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	4.0	25.5	6.0	2.0	20.5	3.5
Merged-chr14-63143671-2	chr14	63143171	63144171	+	764.625	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007798, exon 10 of 10)	3' UTR (NM_007798, exon 10 of 10)	21209.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123036128-4	chr8	123035399	123036399	+	764.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	B3|SINE|B2	6385.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	9.5	27.5	10.0	5.0	22.0	8.5
Merged-chr10-21937500-4	chr10	21937018	21938018	+	764.612488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 2 of 13)	intron (NM_001161845, intron 2 of 13)	-41154.0	NM_001161847	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	26.5	63.0	71.5	14.5	13.5	26.5
Merged-chr6-115227694-3	chr6	115227176	115228176	+	764.611145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111015, intron 1 of 12)	intron (NM_001111015, intron 1 of 12)	-11318.0	NM_001326560	20965.0	Mm.441431	NM_013681	ENSMUSG00000009394	Syn2	2900074L19Rik|AI836018|AI841723	synapsin II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-81102786-2	chr3	81102286	81103286	+	764.583374	f0_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	66370.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	84.0	249.5	108.0	112.5	213.0	116.0
Merged-chr1-132388918-3	chr1	132388416	132389416	+	764.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178874, intron 1 of 4)	intron (NM_178874, intron 1 of 4)	1402.0	NM_001311107	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	6.5	14.0	8.0	2.5	9.5	3.5
Merged-chr10-10355758-3	chr10	10355258	10356258	+	764.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 30 of 36)	intron (NM_001127353, intron 30 of 36)	116556.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	1.0	0.0	0.5	0.0	2.0	0.0
Merged-chr18-62174702-3	chr18	62174213	62175213	+	764.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5268.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19562648-4	chr3	19562145	19563145	+	764.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163536, intron 2 of 4)	intron (NM_001163536, intron 2 of 4)	31398.0	NM_001163537	66326.0	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74873194-2	chr17	74872694	74873694	+	764.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132335.0	NM_019919	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-61599992-2	chr2	61599492	61600492	+	764.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_149323, intron 2 of 9)	intron (NR_149323, intron 2 of 9)	6895.0	NR_149323	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30409157-2	chr2	30408657	30409657	+	764.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007760, intron 3 of 13)	intron (NM_007760, intron 3 of 13)	6591.0	NM_007760	12908.0	Mm.20396	NM_007760	ENSMUSG00000026853	Crat	AW107812|CARAT	carnitine acetyltransferase	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr2-30933203-2	chr2	30932703	30933703	+	764.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-19798.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128786605-2	chr6	128786105	128787105	+	764.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159904, intron 1 of 5)	Tigger7|DNA|TcMar-Tigger	2036.0	NM_001159904	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117884969-2	chr5	117884469	117885469	+	764.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 2 of 27)	intron (NM_008712, intron 2 of 27)	18130.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-59634161-1	chr1	59633661	59634661	+	764.5	f0_balb.idr	exon (NM_001357842, exon 18 of 19)	exon (NM_001357842, exon 18 of 19)	36673.0	NM_009460	22218.0	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-90666162-2	chr6	90665662	90666662	+	764.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356440, intron 12 of 13)	intron (NM_001356440, intron 12 of 13)	46916.0	NM_001037493	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4924495-2	chr16	4923995	4924995	+	764.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357061, exon 11 of 16)	exon (NM_001357061, exon 11 of 16)	-14616.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111758173-2	chr12	111757673	111758673	+	764.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025358)	promoter-TSS (NM_001025358)	-676.0	NM_001361612	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98830130-2	chr15	98829630	98830630	+	764.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016781, intron 1 of 11)	intron (NM_016781, intron 1 of 11)	1378.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4684208-2	chr7	4683708	4684708	+	764.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024172, intron 2 of 7)	intron (NM_024172, intron 2 of 7)	773.0	NM_001360629	66245.0	Mm.6803	NM_024172	ENSMUSG00000063802	Hspbp1	1500019G21Rik	HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9509062-3	chr18	9508571	9509571	+	764.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCCTG)n|Simple_repeat|Simple_repeat	-58917.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0.5	3.0	0.0	0.0	0.0	1.5
Merged-chr11-110563512-2	chr11	110563010	110564010	+	764.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	84170.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0.0	15.5	9.0	10.5	4.0	5.5
Merged-chr7-18991904-2	chr7	18991404	18992404	+	764.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145579, exon 2 of 3)	5' UTR (NM_145579, exon 2 of 3)	659.0	NM_145579	232934.0	Mm.440069	NM_145579	ENSMUSG00000048481	Mypop	Myodysa|P42pop	Myb-related transcription factor, partner of profilin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17631852-2	chr6	17631352	17632352	+	764.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5158.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	17.0	32.0	60.0	18.0	28.0	28.0
Merged-chr15-90216329-3	chr15	90215825	90216825	+	764.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-7986.0	NM_001033441	380959.0	Mm.17853	NM_001033441	ENSMUSG00000075470	Alg10b	AA469671|AU045404|AW123895|C85569|Deaf1|Gm917|nse5	asparagine-linked glycosylation 10B (alpha-1,2-glucosyltransferase)	protein-coding	5.0	9.5	11.5	2.0	8.0	8.0
Merged-chr8-75167320-2	chr8	75166820	75167820	+	764.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-46624.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86221186-3	chr15	86220732	86221732	+	764.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 1 of 12)	intron (NM_145476, intron 1 of 12)	6773.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-82217790-2	chr16	82217290	82218290	+	764.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	1017093.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31409621-2	chr14	31409121	31410121	+	764.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	8056.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5100995-2	chr11	5100495	5101495	+	764.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177370, intron 3 of 8)	intron (NM_177370, intron 3 of 8)	830.0	NM_001290493	279766.0	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59226427-2	chr11	59225929	59226929	+	764.5	f0_balb.idr|f0_c57.idr	intron (NM_007476, intron 1 of 4)	intron (NM_007476, intron 1 of 4)	1733.0	NM_001130408	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	14.5	39.5	59.0	16.5	51.0	52.0
Merged-chr7-53577930-2	chr7	53577430	53578430	+	764.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	313959.0	NR_105746	102466619.0		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3716500-2	chr2	3716000	3717000	+	764.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	3042.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-66841673-2	chr4	66841169	66842169	+	764.5	f0_balb.idr|f1_balb.idr	3' UTR (NM_021297, exon 3 of 3)	3' UTR (NM_021297, exon 3 of 3)	14118.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	18.5	49.0	21.5	39.0	41.5	15.0
Merged-chr2-166586651-2	chr2	166586151	166587151	+	764.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_177782, exon 23 of 40)	exon (NM_177782, exon 23 of 40)	22129.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117178114-2	chr11	117177614	117178614	+	764.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-21547.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-124442802-2	chr9	124442302	124443302	+	764.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19015.0	NR_015516	75135.0	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69779141-2	chr11	69778641	69779641	+	764.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029348, exon 4 of 4)	exon (NM_029348, exon 4 of 4)	13229.0	NM_029348	75580.0	Mm.426361	NM_029348	ENSMUSG00000018750	Zbtb4	2310026P19Rik|9230111I22Rik|mKIAA1538	zinc finger and BTB domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52623268-2	chr13	52622768	52623768	+	764.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001198977, exon 6 of 14)	exon (NM_001198977, exon 6 of 14)	26386.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113082295-2	chr6	113081795	113082795	+	764.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028385, intron 1 of 21)	intron (NM_028385, intron 1 of 21)	4656.0	NM_028385	72895.0	Mm.367159	NM_028385	ENSMUSG00000034269	Setd5	2900045N06Rik|C330007C20|C85544|mKIAA1757	SET domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142563684-3	chr3	142563184	142564184	+	764.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355403, intron 3 of 11)	intron (NM_001355403, intron 3 of 11)	3328.0	NM_001289493	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	1.0	3.0	2.0	0.0	0.5	3.0
Merged-chr1-7077359-4	chr1	7076873	7077873	+	764.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11547.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30127790-2	chr2	30127290	30128290	+	764.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-3179.0	NM_001290503	227693.0	Mm.44526	NM_178694	ENSMUSG00000039686	Zer1	C230075L19Rik|Zyg11bl	zyg-11 related, cell cycle regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32830890-2	chr19	32830390	32831390	+	764.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73313.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	4.5	0.0	0.5	4.0	1.5	8.0
Merged-chr9-64085449-2	chr9	64084949	64085949	+	764.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040743, intron 1 of 2)	intron (NR_040743, intron 1 of 2)	4688.0	NR_040743	76814.0	Mm.243771	NR_040743		Scarletltr	2600006L11Rik	Scarletltr, erythroid developmental long intergenic non-protein coding transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-9765105-3	chr17	9764621	9765621	+	764.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045433, intron 3 of 3)	L1MC5a|LINE|L1	10745.0	NR_045433	71092.0	Mm.243827	NR_045433		4930452A19Rik	4933424P20Rik	RIKEN cDNA 4930452A19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-154036311-2	chr1	154035811	154036811	+	764.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	136382.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141135109-2	chr4	141134609	141135609	+	764.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277195, intron 1 of 3)	PB1D10|SINE|Alu	4687.0	NR_102344	213491.0	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-52712484-1	chr17	52711984	52712984	+	764.5	f0_balb.idr	intron (NM_001031811, intron 1 of 15)	intron (NM_001031811, intron 1 of 15)	109775.0	NM_001031811	211468.0	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125314137-3	chr5	125313640	125314640	+	764.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	26954.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	27.5	21.5	35.5	36.5	51.0	38.0
Merged-chr10-67581739-2	chr10	67581239	67582239	+	764.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9780.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31088995-2	chr2	31088495	31089495	+	764.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 4 of 15)	PB1D10|SINE|Alu	7505.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136605990-4	chr1	136605516	136606516	+	764.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18885.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29297236-4	chr7	29296741	29297741	+	764.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6764.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125481239-4	chr6	125480728	125481728	+	764.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007657, intron 1 of 7)	intron (NM_007657, intron 1 of 7)	13532.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45078673-3	chr7	45078131	45079131	+	764.43335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025533)	TTS (NM_025533)	13582.0	NM_026555	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	0.0	3.5	3.0	5.5	7.0	2.5
Merged-chr6-37390502-4	chr6	37389998	37390998	+	764.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	51650.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-145758920-4	chr3	145758482	145759482	+	764.402771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026993, exon 1 of 6)	exon (NM_026993, exon 1 of 6)	290.0	NM_026993	69219.0	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108095785-4	chr9	108095291	108096291	+	764.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007567)	TTS (NM_007567)	-1311.0	NM_146226	235606.0	Mm.219639	NM_146226	ENSMUSG00000032590	Apeh	-	acylpeptide hydrolase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70843485-2	chr8	70842985	70843985	+	764.333374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_032397, exon 10 of 10)	3' UTR (NM_032397, exon 10 of 10)	-3765.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	1.0	0.0	1.0	4.0	2.0	0.5
Merged-chr10-81501227-2	chr10	81500789	81501789	+	764.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1152.0	NM_010102	13611.0	Mm.33065	NM_010102	ENSMUSG00000044199	S1pr4	Edg6|Lpc1|S1p4	sphingosine-1-phosphate receptor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127339133-3	chr2	127338660	127339660	+	764.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010090)	TTS (NM_010090)	521.0	NM_172539	215095.0	Mm.31313	NM_172539	ENSMUSG00000050468	Astl	7420700F21|C87576|Sas1b	astacin-like metalloendopeptidase (M12 family)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33076439-3	chr16	33075912	33076912	+	764.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172823, intron 6 of 16)	MTD|LTR|ERVL-MaLR	13891.0	NM_172823	239833.0	Mm.131951	NM_172823	ENSMUSG00000022802	Lmln	5330415H22Rik|AI465495	leishmanolysin-like (metallopeptidase M8 family)	protein-coding	1.5	12.0	1.5	1.5	14.0	6.0
Merged-chr5-140596694-2	chr5	140596194	140597194	+	764.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-10647.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35215000-3	chr12	35214500	35215500	+	764.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20103.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	22.0	18.5	32.0	40.0	34.5	40.0
Merged-chr2-167962516-4	chr2	167962020	167963020	+	764.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	30193.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44528643-4	chr11	44528172	44529172	+	764.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 2 of 5)	MTD|LTR|ERVL-MaLR	9295.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125542784-3	chr8	125542264	125543264	+	764.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	27099.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	0.0	7.5	0.5	3.0	2.0	2.5
Merged-chr16-91346871-2	chr16	91346371	91347371	+	764.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-25912.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5926170-2	chr19	5925670	5926670	+	764.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1354.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	2.0	12.5	18.5	1.0	13.0	18.5
Merged-chr3-40708737-2	chr3	40708237	40709237	+	764.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178386)	promoter-TSS (NM_178386)	-134.0	NM_178386	73333.0	Mm.78691	NM_178386	ENSMUSG00000069041	Slc25a31	1700034J06Rik|Ant4|Sfec	solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122460719-2	chr8	122460219	122461219	+	764.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013914)	promoter-TSS (NM_013914)	-27.0	NM_013914	30927.0	Mm.103673	NM_013914	ENSMUSG00000006587	Snai3	AI643946|Smuc|Zfp293	snail family zinc finger 3	protein-coding	4.0	1.0	2.5	0.0	0.0	0.0
Merged-chr16-94602462-2	chr16	94601962	94602962	+	764.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-8957.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67383836-2	chr17	67383334	67384334	+	764.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29343.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	7.0	3.5	14.0	14.0	0.0	1.5
Merged-chr16-14477798-4	chr16	14477393	14478393	+	764.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84424.0	NR_033556	545280.0	Mm.123679	NR_033556		A630010A05Rik	-	RIKEN cDNA A630010A05 gene	ncRNA	8.0	11.0	14.0	3.5	12.0	2.0
Merged-chr12-79725864-3	chr12	79725394	79726394	+	764.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 8 of 10)	intron (NM_009014, intron 8 of 10)	198839.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-29206900-4	chr10	29206395	29207395	+	764.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4748.0	NM_001162537	212448.0	Mm.132789	NM_001162537	ENSMUSG00000004360	9330159F19Rik	-	RIKEN cDNA 9330159F19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165655250-4	chr1	165654748	165655748	+	764.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 5 of 5)	intron (NM_001038846, intron 5 of 5)	-20707.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127673811-2	chr10	127673311	127674311	+	764.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3254.0	NM_173732	210035.0	Mm.251075	NM_173732	ENSMUSG00000040195	Nemp1	Tmem194|Tmem194a	nuclear envelope integral membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9609151-3	chr3	9608660	9609660	+	764.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133218, intron 1 of 8)	CpG	925.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0.0	0.0	3.5	0.0	0.0	0.0
Merged-chr9-110621534-2	chr9	110621034	110622034	+	764.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_026012, exon 5 of 5)	exon (NM_026012, exon 5 of 5)	2859.0	NM_026012	67169.0	Mm.46680	NM_026012	ENSMUSG00000032491	Nradd	2610311B09Rik|BB104149|NRDD|NRH2|PLAIDD	neurotrophin receptor associated death domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70613969-4	chr8	70613443	70614443	+	764.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2901.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	31.5	153.0	112.0	46.5	131.5	88.5
Merged-chr10-111161497-3	chr10	111161015	111162015	+	764.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-3287.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3067959-2	chr4	3067459	3068459	+	764.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104124.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55404074-2	chr13	55403576	55404576	+	764.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011392, intron 8 of 12)	intron (NM_011392, intron 8 of 12)	4428.0	NM_011392	20505.0	Mm.276355	NM_011392	ENSMUSG00000021490	Slc34a1	NaPi-IIa|Npt2|Npt2a|Slc17a2	solute carrier family 34 (sodium phosphate), member 1	protein-coding	0.0	3.5	0.0	0.0	8.0	1.0
Merged-chr1-88269970-2	chr1	88269470	88270470	+	764.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040291)	promoter-TSS (NR_040291)	-562.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90546010-2	chr2	90545489	90546489	+	764.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	(CA)n|Simple_repeat|Simple_repeat	34658.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	63.5	123.0	81.0	48.0	143.0	81.5
Merged-chr6-54078426-4	chr6	54077943	54078943	+	764.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	38511.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	6.5	18.0	22.5	11.5	9.0	6.0
Merged-chr12-111912003-4	chr12	111911544	111912544	+	764.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-3989.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-18957993-4	chr11	18957494	18958494	+	764.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010789, intron 7 of 11)	intron (NM_010789, intron 7 of 11)	60975.0	NM_001193271	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	1.0	3.5	0.0	1.0	0.0	1.0
Merged-chr15-103454523-2	chr15	103454023	103455023	+	764.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_153505, intron 1 of 30)	intron (NM_153505, intron 1 of 30)	698.0	NM_153505	105855.0	Mm.30805	NM_153505	ENSMUSG00000022488	Nckap1l	4930568P13Rik|AI463083|Hem1|Hemp1	NCK associated protein 1 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127553694-3	chr10	127553174	127554174	+	764.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 59 of 88)	intron (NM_008512, intron 59 of 88)	-19115.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.0	0.0	2.5	0.0	2.5	0.5
Merged-chr3-142744202-3	chr3	142743698	142744698	+	764.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001293560, exon 14 of 14)	3' UTR (NM_001293560, exon 14 of 14)	-21049.0	NM_145546	229906.0	Mm.271756	NM_145546	ENSMUSG00000028271	Gtf2b	-	general transcription factor IIB	protein-coding	4.0	0.0	0.5	3.0	10.5	0.0
Merged-chr4-120868985-3	chr4	120868482	120869482	+	764.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182929, intron 1 of 7)	L2b|LINE|L2	14183.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	5.0	5.5	2.5	0.0	0.0	2.0
Merged-chr18-32399741-4	chr18	32399229	32400229	+	764.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 1 of 17)	intron (NM_001360876, intron 1 of 17)	-21445.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89244877-2	chr3	89244377	89245377	+	764.083374	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_121683, exon 1 of 11)	non-coding (NR_121683, exon 1 of 11)	136.0	NR_121683	360213.0	Mm.331156	NM_183037	ENSMUSG00000042766	Trim46	TRIFIC	tripartite motif-containing 46	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-42855427-2	chr17	42854874	42855874	+	764.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009847, intron 1 of 17)	intron (NM_009847, intron 1 of 17)	21050.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	6.5	3.5	1.0	6.5	0.0	8.0
Merged-chr14-57718394-4	chr14	57717843	57718843	+	764.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015771, intron 2 of 7)	intron (NM_015771, intron 2 of 7)	16075.0	NM_153382	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-107506401-3	chr1	107505888	107506888	+	764.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5035.0	NM_001174170	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43407805-3	chr7	43407316	43408316	+	764.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172900)	promoter-TSS (NM_172900)	-464.0	NM_172900	243958.0	Mm.24444	NM_172900	ENSMUSG00000030468	Siglecg	9830164H23|A630096C01Rik|Siglec-G|Siglec10|mSiglec-G	sialic acid binding Ig-like lectin G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43624143-3	chr19	43623645	43624645	+	764.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11820.0	NM_008699	18089.0	Mm.56994	NM_008699	ENSMUSG00000044220	Nkx2-3	Nkx-2.3|Nkx2.3|tinman	NK2 homeobox 3	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr4-129455529-4	chr4	129455032	129456032	+	764.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6147.0	NM_133889	100383.0	Mm.17918	NM_133889	ENSMUSG00000040859	Bsdc1	1110063F24Rik|AW011758	BSD domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33995073-1	chr17	33994573	33995573	+	764.0	f1_c57bl6.idr	TTS (NM_001347346)	TTS (NM_001347346)	5260.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	7.5	13.0	7.0	3.5	0.0	1.0
Merged-chr5-92292676-1	chr5	92292176	92293176	+	764.0	f1_c57bl6.idr	exon (NM_172713, exon 14 of 22)	exon (NM_172713, exon 14 of 22)	-14495.0	NM_025972	67111.0	Mm.28890	NM_025972	ENSMUSG00000029413	Naaa	2210023K21Rik|3830414F09Rik|Asahl	N-acylethanolamine acid amidase	protein-coding	2.0	21.0	11.0	8.5	8.5	4.0
Merged-chr17-5921010-2	chr17	5920510	5921510	+	764.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025664, intron 12 of 17)	intron (NM_025664, intron 12 of 17)	-20270.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44655675-1	chr7	44655175	44656175	+	764.0	f1_c57bl6.idr	exon (NM_001271538, exon 5 of 41)	exon (NM_001271538, exon 5 of 41)	9828.0	NM_001271538	71960.0	Mm.158289	NM_028021	ENSMUSG00000030739	Myh14	2400004E04Rik|II-C|NHMCII|NMHC II-C	myosin, heavy polypeptide 14	protein-coding	0.0	7.5	6.0	1.0	0.0	1.5
Merged-chr17-35312083-2	chr17	35311583	35312583	+	764.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	-8464.0	NM_010390	15006.0	Mm.466882	NM_010390	ENSMUSG00000079507	H2-Q1	H-2Q1|Q1|Q1b|Q1d|Q1k|Qa-1|Qa1|Qed-1	histocompatibility 2, Q region locus 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-58319394-1	chr14	58318894	58319894	+	764.0	f0_balb.idr	Intergenic	RSINE1|SINE|B4	246708.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117152378-2	chr4	117151878	117152878	+	764.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	2196.0	NR_028524	100217424.0		NR_028524	ENSMUSG00000065680	Snord38a	MBII-329	small nucleolar RNA, C/D box 38A	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41891516-1	chr10	41891016	41892016	+	764.0	f0_balb.idr	intron (NM_001013370, intron 1 of 9)	intron (NM_001013370, intron 1 of 9)	4077.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66850690-2	chr14	66850190	66851190	+	764.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009955, intron 3 of 13)	MLT1B|LTR|ERVL-MaLR	17910.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.5	1.5	2.0	1.5	2.0	0.0
Merged-chr10-104844056-1	chr10	104843556	104844556	+	764.0	f1_balb.idr	Intergenic	Lx|LINE|L1	556787.0	NR_105838	102465222.0		NR_105838	ENSMUSG00000099264	Mir6411	Gm27767|mmu-mir-6411	microRNA 6411	ncRNA	9.5	3.0	1.0	8.0	8.5	3.0
Merged-chr5-101943946-2	chr5	101943446	101944446	+	764.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172882, exon 11 of 67)	exon (NM_172882, exon 11 of 67)	125975.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	2.5	4.0	0.0	3.0	1.0	0.5
Merged-chr12-118303283-2	chr12	118302783	118303783	+	764.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1843.0	NM_001166385	20688.0	Mm.34699	NM_009239	ENSMUSG00000025323	Sp4	5730497N03Rik|HF-1b|HF1-b	trans-acting transcription factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103471413-2	chr14	103470913	103471913	+	764.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41928.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6666319-2	chr4	6665819	6666819	+	764.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-212048.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127294985-1	chr3	127294485	127295485	+	764.0	f0_c57.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	114073.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	20.0	10.0	7.5	3.5	15.5	5.0
Merged-chr6-93985425-2	chr6	93984925	93985925	+	764.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029850, intron 1 of 23)	intron (NM_001029850, intron 1 of 23)	-71735.0	NM_001083320	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45850400-2	chr4	45849900	45850900	+	764.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305421, intron 1 of 18)	intron (NM_001305421, intron 1 of 18)	1453.0	NM_028788	74152.0	Mm.63645	NM_028788	ENSMUSG00000028327	Stra6l	1300002K09Rik|Rbpr2	STRA6-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-70651217-2	chr13	70650717	70651717	+	764.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13583.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-86688594-2	chr18	86688094	86689094	+	764.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-22467.0	NM_001302356	12405.0	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56569308-2	chr18	56568808	56569808	+	764.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162989, intron 1 of 4)	B4A|SINE|B4	-3563.0	NM_019996	56698.0	Mm.214569	NM_019996	ENSMUSG00000008301	Phax	2810055C14Rik|4933427L19Rik|AU018701|AU018854|D18Ertd65e|Rnuxa|p55	phosphorylated adaptor for RNA export	protein-coding	0.0	3.0	1.5	1.5	0.0	4.0
Merged-chr15-59517039-3	chr15	59516534	59517534	+	764.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-131620.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	5.5	2.0	0.0	4.0	2.0	4.0
Merged-chr10-14151806-1	chr10	14151306	14152306	+	764.0	f1_c57bl6.idr	TTS (NM_010437)	TTS (NM_010437)	185427.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.0	0.0	1.5	0.0	0.0	2.5
Merged-chr2-6872303-3	chr2	6871813	6872813	+	764.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347094)	promoter-TSS (NM_001347094)	-278.0	NM_001347094	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-51478031-1	chr17	51477531	51478531	+	764.0	f0_balb.idr	intron (NR_037268, intron 3 of 4)	intron (NR_037268, intron 3 of 4)	-29762.0	NR_046166	328837.0	Mm.236143	NR_046166		C330011F03Rik	C330011F03	RIKEN cDNA C330011F03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-84794666-2	chr11	84794166	84795166	+	764.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24849.0	NM_145433	217038.0	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik	mitochondrial rRNA methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60306158-2	chr10	60305658	60306658	+	764.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045556, exon 62 of 69)	non-coding (NR_045556, exon 62 of 69)	21697.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-59997592-2	chr1	59997092	59998092	+	764.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001316694, exon 10 of 11)	exon (NM_001316694, exon 10 of 11)	45530.0	NM_001357296	70375.0	Mm.17834	NM_027407	ENSMUSG00000026018	Ica1l	1700030B17Rik|Als2cr15|b2b3465Clo	islet cell autoantigen 1-like	protein-coding	2.0	0.0	0.0	0.0	3.5	1.0
Merged-chr8-24398485-2	chr8	24397985	24398985	+	764.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40461.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21195260-2	chr9	21194760	21195760	+	764.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183408, intron 6 of 14)	intron (NM_183408, intron 6 of 14)	-1445.0	NM_019798	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107305329-2	chr11	107304829	107305829	+	764.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	intron (NR_153311, intron 4 of 9)	-115948.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-141048455-1	chr6	141047955	141048955	+	764.0	f0_balb.idr	Intergenic	Intergenic	-200814.0	NM_018779	54611.0	Mm.103728	NM_018779	ENSMUSG00000041741	Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60963681-2	chr18	60963181	60964181	+	764.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009792, exon 1 of 7)	5' UTR (NM_009792, exon 1 of 7)	127.0	NM_001286809	12322.0	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66136437-1	chr7	66135937	66136937	+	764.0	f0_balb.idr	intron (NM_001081163, intron 2 of 2)	intron (NM_001081163, intron 2 of 2)	26922.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27106051-2	chr14	27105551	27106551	+	764.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_134437, exon 13 of 13)	3' UTR (NM_134437, exon 13 of 13)	-37942.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129188183-2	chr4	129187683	129188683	+	764.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361317, intron 1 of 8)	intron (NM_001361317, intron 1 of 8)	1359.0	NM_029036	74648.0	Mm.172064	NM_029036	ENSMUSG00000040928	S100pbp	4930429A08Rik|AI851343|S100pbpr	S100P binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-101463282-2	chr14	101462782	101463782	+	764.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 11 of 18)	intron (NM_001081278, intron 11 of 18)	145909.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28689499-2	chr17	28688999	28689999	+	764.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290320, intron 1 of 19)	intron (NM_001290320, intron 1 of 19)	488.0	NM_001290320	224661.0		NM_146076	ENSMUSG00000036196	Slc26a8	-	solute carrier family 26, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81044664-2	chr10	81044164	81045164	+	764.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_024499, exon 12 of 12)	3' UTR (NM_024499, exon 12 of 12)	-7333.0	NM_134135	106947.0	Mm.5353	NM_134135	ENSMUSG00000046822	Slc39a3	AI845814|ZIP-3|Zip3	solute carrier family 39 (zinc transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32553934-2	chr2	32553434	32554434	+	764.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153560, intron 1 of 10)	intron (NM_153560, intron 1 of 10)	-16924.0	NM_010073	13481.0	Mm.22001	NM_010073	ENSMUSG00000026810	Dpm2	AW557993|R75484	dolichol-phosphate (beta-D) mannosyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59856556-2	chr13	59856070	59857070	+	764.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-33423.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	9.5	39.0	31.0	61.5	121.0	83.5
Merged-chr2-46302881-2	chr2	46302381	46303381	+	764.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	606276.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97276925-1	chr6	97276425	97277425	+	764.0	f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-24145.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.0	0.0	2.5	11.0	1.0	3.5
Merged-chr8-70834284-2	chr8	70833784	70834784	+	764.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027560)	TTS (NM_027560)	5436.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	50.0	158.5	77.5	73.5	140.0	81.5
Merged-chr2-166586171-2	chr2	166585671	166586671	+	764.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 23 of 39)	intron (NM_177782, intron 23 of 39)	21649.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-150405638-3	chr1	150405144	150406144	+	764.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133780, intron 7 of 51)	intron (NM_133780, intron 7 of 51)	-12564.0	NM_001357579	226499.0	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170849834-5	chr1	170849173	170850173	+	763.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 3 of 15)	intron (NM_001081304, intron 3 of 15)	18098.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50312802-4	chr6	50312303	50313303	+	763.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027881, intron 15 of 21)	intron (NM_027881, intron 15 of 21)	-51034.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19527516-3	chr10	19527007	19528007	+	763.955566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	32864.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-62830069-2	chr5	62829569	62830569	+	763.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 4 of 8)	intron (NM_001170705, intron 4 of 8)	16246.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	1.5	5.0	0.0	0.0	0.0	0.0
Merged-chr12-4237632-2	chr12	4237132	4238132	+	763.916626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001204912, exon 2 of 2)	3' UTR (NM_001204912, exon 2 of 2)	3605.0	NM_001204912	69709.0	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157129271-4	chr2	157128774	157129774	+	763.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139520, intron 2 of 16)	intron (NM_001139520, intron 2 of 16)	5948.0	NM_001139520	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99883935-4	chr12	99883439	99884439	+	763.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028354)	promoter-TSS (NM_028354)	-497.0	NM_030172	78767.0	Mm.235920	NM_030172	ENSMUSG00000021176	Efcab11	2610021K21Rik|2610110A13Rik	EF-hand calcium binding domain 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-51466613-2	chr1	51466113	51467113	+	763.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11786.0	NM_001310548	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-72488802-3	chr11	72488251	72489251	+	763.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153060, intron 1 of 12)	intron (NM_153060, intron 1 of 12)	1169.0	NM_153060	216892.0	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8866324-5	chr10	8865794	8866794	+	763.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	19776.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	2.0	2.0	2.0	0.0	0.0	2.0
Merged-chr17-29603447-3	chr17	29602951	29603951	+	763.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198647, intron 12 of 12)	intron (NM_198647, intron 12 of 12)	-7146.0	NR_045447	74092.0	Mm.396264	NR_045447	ENSMUSG00000089900	Tbc1d22bos	0610038L08Rik	TBC1 domain family, member 22B, opposite strand	ncRNA	3.0	0.0	0.0	0.0	0.0	0.5
Merged-chr13-37998306-3	chr13	37997810	37998810	+	763.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4102.0	NM_001360842	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	5.0	8.5	6.5	3.0	5.0	9.0
Merged-chr13-58488700-3	chr13	58488196	58489196	+	763.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85353.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-6410152-3	chr1	6409646	6410646	+	763.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50815.0	NM_001195732	620393.0	Mm.388992	NM_001195732	ENSMUSG00000087247	Alkal1	EG620393|Fam150a	ALK and LTK ligand 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117990753-2	chr11	117990253	117991253	+	763.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_151726, intron 1 of 9)	intron (NR_151726, intron 1 of 9)	3896.0	NR_151726	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111601279-2	chr12	111600779	111601779	+	763.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_021516, intron 2 of 16)	RMER15|LTR|ERVL	26769.0	NM_022801	17169.0	Mm.260504	NM_021516	ENSMUSG00000007411	Mark3	1600015G02Rik|A430080F22Rik|C-TAK1|ETK-1|ETK1|Emk2|MPK10	MAP/microtubule affinity regulating kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-125789377-2	chr2	125788877	125789877	+	763.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-6507.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	7.5	14.0	12.0	12.5	7.5	7.5
Merged-chr9-62998028-3	chr9	62997557	62998557	+	763.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17178.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-125962898-4	chr4	125962389	125963389	+	763.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40579.0	NR_015560	72395.0	Mm.112888	NR_015560	ENSMUSG00000085562	2610028E06Rik	BB043107	RIKEN cDNA 2610028E06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24261280-4	chr5	24260764	24261764	+	763.733337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3736.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	1.5	19.0	4.0	9.5	2.5	2.0
Merged-chr17-47842929-3	chr17	47842426	47843426	+	763.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-8235.0	NM_001109973	17240.0	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	13.0	14.0	20.5	2.5	11.0	12.5
Merged-chr15-27643115-3	chr15	27642608	27643608	+	763.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-12415.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116429810-2	chr11	116429310	116430310	+	763.6875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4284.0	NM_176902	319370.0	Mm.258466	NM_176902	ENSMUSG00000050628	Ubald2	1110014K08Rik|D030012E24Rik|Fam100b	UBA-like domain containing 2	protein-coding	0.5	1.0	0.0	0.0	1.0	0.0
Merged-chr7-80823911-4	chr7	80823353	80824353	+	763.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20522.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-40086867-2	chr1	40086367	40087367	+	763.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360800, intron 1 of 8)	MLT1E|LTR|ERVL-MaLR	774.0	NM_001360800	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62299087-2	chr4	62298587	62299587	+	763.666687	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025286)	TTS (NM_025286)	7540.0	NM_001290518	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48170711-2	chr17	48170211	48171211	+	763.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-3454.0	NM_178796	328830.0	Mm.470939	NM_178796	ENSMUSG00000043939	A530064D06Rik	Trem4|pdctrem	RIKEN cDNA A530064D06 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3706611-3	chr7	3706007	3707007	+	763.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029767, intron 4 of 4)	intron (NM_029767, intron 4 of 4)	2466.0	NM_029767	76846.0	Mm.13944	NM_029767	ENSMUSG00000006333	Rps9	3010033P07Rik|AL022771|AL022885	ribosomal protein S9	protein-coding	55.0	150.0	133.5	44.5	169.5	142.0
Merged-chr14-65884982-1	chr14	65884482	65885482	+	763.666687	f0_c57.idr	Intergenic	Intergenic	47680.0	NM_145944	67179.0	Mm.214576	NM_145944	ENSMUSG00000022035	Ccdc25	2610528H13Rik|NSrp70	coiled-coil domain containing 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-14974811-3	chr14	14974335	14975335	+	763.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195229, intron 29 of 34)	L1_Mus3|LINE|L1	154020.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	2.5	2.0	0.5	3.5	1.5	0.5
Merged-chr7-81851803-3	chr7	81851314	81852314	+	763.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7187.0	NR_111910	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	3.5	10.0	21.5	6.5	20.5	7.5
Merged-chr9-34983605-2	chr9	34983105	34984105	+	763.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190912, intron 3 of 15)	intron (NM_001190912, intron 3 of 15)	-133123.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	3.5	0.5	1.5	0.0	0.0	0.5
Merged-chr5-3195620-4	chr5	3195110	3196110	+	763.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-148283.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85452387-2	chr12	85451922	85452922	+	763.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21468.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35421087-2	chr17	35420587	35421587	+	763.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3760.0	NM_023124	15019.0	Mm.486287	NM_023124		H2-Q8	H-2Q8|MMS10-T|Ms10t|Qa-2|Qa-8|Qa8	histocompatibility 2, Q region locus 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139832284-3	chr5	139831778	139832778	+	763.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5384.0	NM_025604	66506.0	Mm.29070	NM_025604	ENSMUSG00000029551	Psmg3	1810042K04Rik|4930403H09Rik|AI303239	proteasome (prosome, macropain) assembly chaperone 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30827580-4	chr14	30827056	30828056	+	763.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028839, intron 1 of 7)	intron (NM_028839, intron 1 of 7)	1962.0	NM_028839	69179.0	Mm.143025	NM_028839	ENSMUSG00000006526	Tmem110	1810038N08Rik|2310014H19Rik|AW554125|STIMATE	transmembrane protein 110	protein-coding	5.0	5.0	7.5	6.5	6.5	10.5
Merged-chr11-32530449-2	chr11	32530104	32531104	+	763.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-2662.0	NM_001359178	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142074945-3	chr5	142074435	142075435	+	763.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177879, intron 22 of 44)	intron (NM_177879, intron 22 of 44)	-326562.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	0.0	0.0	0.0	0.0	3.5	1.5
Merged-chr13-104750034-3	chr13	104749564	104750564	+	763.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360094, intron 10 of 13)	intron (NM_001360094, intron 10 of 13)	66889.0	NM_026072	67285.0	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166154498-5	chr2	166153998	166154998	+	763.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355619, intron 1 of 21)	CpG	787.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-101556789-3	chr3	101556293	101557293	+	763.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47914.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	2.5	22.5	32.0	3.5	21.0	5.0
Merged-chr6-127420072-3	chr6	127419578	127420578	+	763.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-26762.0	NM_001346513	101187.0	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	0.0	0.5	2.0	0.5	0.5	2.0
Merged-chr6-72161069-3	chr6	72160625	72161625	+	763.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37928.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30492951-4	chr7	30492497	30493497	+	763.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019546)	promoter-TSS (NM_019546)	-661.0	NM_019546	56189.0	Mm.270525	NM_019546	ENSMUSG00000036892	Prodh2	2510028N04Rik|2510038B11Rik|HYPDH|MmPOX|MmPOX1|POX1	proline dehydrogenase (oxidase) 2	protein-coding	0.0	10.5	8.5	0.0	0.0	0.0
Merged-chr1-63111041-3	chr1	63110535	63111535	+	763.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114609, intron 1 of 11)	B3|SINE|B2	3232.0	NM_001081436	227195.0	Mm.74718	NM_001081436	ENSMUSG00000040865	Ino80d	7330405I11|A430093A21Rik|BC010584	INO80 complex subunit D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35462261-2	chr16	35461761	35462761	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028295, intron 3 of 16)	intron (NM_028295, intron 3 of 16)	28612.0	NM_028295	72599.0	Mm.71015	NM_028295	ENSMUSG00000022844	Pdia5	2700053F16Rik|AU015525|Pdir	protein disulfide isomerase associated 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-52113660-2	chr5	52113160	52114160	+	763.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	22357.0	NR_105845	102466648.0		NR_105845	ENSMUSG00000098726	Mir6417	Gm27334|mmu-mir-6417	microRNA 6417	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57121966-2	chr17	57121466	57122466	+	763.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16024.0	NR_033508	100169874.0	Mm.76700	NR_033508	ENSMUSG00000079414	Gm11110	-	predicted gene 11110	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117126096-2	chr8	117125596	117126596	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021486, intron 7 of 10)	B1_Mur4|SINE|Alu	30231.0	NM_001163028	63857.0	Mm.174133	NM_021486	ENSMUSG00000031845	Bco1	Bcdo|Bcdo1|Bcmo1|CMO1|Cmoi|beta-CD|betaCMOOX	beta-carotene oxygenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126062835-2	chr4	126062335	126063335	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172701, intron 1 of 9)	T-rich|Low_complexity|Low_complexity	4270.0	NM_172701	230751.0	Mm.38907	NM_172701	ENSMUSG00000042616	Oscp1	1810007P19Rik|5730415O04|6030436A01Rik	organic solute carrier partner 1	protein-coding	3.5	8.5	6.0	4.0	2.5	2.5
Merged-chr7-90011708-2	chr7	90011208	90012208	+	763.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17451.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	0.0	0.5	0.5	0.0	0.5	0.5
Merged-chr1-64543973-2	chr1	64543473	64544473	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037726, intron 1 of 6)	B2_Mm2|SINE|B2	11169.0	NM_001037726	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103356356-2	chr11	103355856	103356856	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205236, intron 3 of 17)	intron (NM_001205236, intron 3 of 17)	7336.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122470656-3	chr7	122470120	122471120	+	763.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 5 of 16)	MER5A1|DNA|hAT-Charlie	181495.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-49630044-2	chr4	49629544	49630544	+	763.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B2|LTR|ERVL	-2016.0	NM_001163263	109331.0	Mm.24765	NM_182999	ENSMUSG00000028309	Rnf20	4833430L21Rik|AW540162|C79397|mKIAA4116	ring finger protein 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133170735-2	chr4	133170234	133171234	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	-24921.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	60.0	229.0	128.0	63.0	214.0	133.0
Merged-chr11-116846778-2	chr11	116846278	116847278	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028865, intron 1 of 4)	intron (NM_028865, intron 1 of 4)	3263.0	NM_028865	74319.0	Mm.429312	NM_028865	ENSMUSG00000090266	Mettl23	1110005A03Rik|1500035B17Rik|4933424L15Rik	methyltransferase like 23	protein-coding	11.0	0.5	4.0	7.0	6.0	1.0
Merged-chr17-29887501-2	chr17	29887001	29888001	+	763.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081160, exon 1 of 16)	exon (NM_001081160, exon 1 of 16)	381.0	NM_001081160	74762.0	Mm.40901	NM_001081160	ENSMUSG00000043557	Mdga1	1200011I03Rik|GPIM|Mamdc3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110535415-3	chr9	110534972	110535972	+	763.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081340, intron 1 of 20)	intron (NM_001081340, intron 1 of 20)	2875.0	NM_001081340	235626.0	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58319418-4	chr13	58318911	58319911	+	763.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175214, intron 10 of 16)	intron (NM_175214, intron 10 of 16)	-6262.0	NR_105788	102465191.0		NR_105788	ENSMUSG00000098258	Mir6369	Gm27615|mmu-mir-6369	microRNA 6369	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9964712-2	chr19	9964212	9965212	+	763.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15888.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-28547427-2	chr2	28546927	28547927	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145836, intron 10 of 17)	intron (NM_001145836, intron 10 of 17)	13963.0	NM_001145836	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148917440-2	chr4	148916940	148917940	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027195, intron 4 of 15)	intron (NM_027195, intron 4 of 15)	34882.0	NR_154553	108168987.0	Mm.393596	NR_154553		Gm13205	AA408865	predicted gene 13205	ncRNA	2.0	0.0	0.0	2.0	0.0	0.0
Merged-chr1-39001327-3	chr1	39000831	39001831	+	763.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13517.0	NM_026850	68833.0	Mm.28121	NM_026850	ENSMUSG00000026078	Pdcl3	1110061A19Rik|C80025|Viaf1	phosducin-like 3	protein-coding	0.0	0.0	0.0	0.0	6.0	0.0
Merged-chr18-85628759-2	chr18	85628259	85629259	+	763.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-677235.0	NM_025969	67105.0	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	translocase of inner mitochondrial membrane 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40472807-2	chr12	40472307	40473307	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	ORR1B2|LTR|ERVL-MaLR	26754.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58551826-2	chr9	58551326	58552326	+	763.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10886.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95386788-2	chr11	95386288	95387288	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016752, intron 3 of 8)	ID_B1|SINE|B4	1932.0	NM_001357797	110172.0	Mm.4593	NM_016752	ENSMUSG00000020873	Slc35b1	UGTrel1|Ugalt2	solute carrier family 35, member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164858947-2	chr2	164858447	164859447	+	763.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1239.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4250002-2	chr8	4249502	4250502	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195258, intron 3 of 6)	intron (NM_001195258, intron 3 of 6)	1788.0	NM_001195258	100044509.0	Mm.439193	NM_001195258	ENSMUSG00000089736	Tgfbr3l	Gm14378	transforming growth factor, beta receptor III-like	protein-coding	0.0	2.5	3.5	1.0	2.5	6.0
Merged-chr9-120019766-2	chr9	120019266	120020266	+	763.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011724, exon 2 of 3)	exon (NM_011724, exon 2 of 3)	3832.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52191562-2	chr6	52191062	52192062	+	763.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008265, exon 1 of 2)	exon (NM_008265, exon 1 of 2)	141.0	NM_008265	15401.0	Mm.439647	NM_008265	ENSMUSG00000000942	Hoxa4	AV206827|Hox-1.4	homeobox A4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6492664-2	chr17	6492160	6493160	+	763.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41666.0	NR_033520	547127.0	Mm.297552	NM_001045538		Tmem181b-ps	Tmem181b	transmembrane protein 181B, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-17393790-2	chr4	17393290	17394290	+	763.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-459103.0	NR_135158	17389.0	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT-MMP 3|MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13287648-2	chr16	13287148	13288148	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122667, intron 2 of 16)	Lx5c|LINE|L1	22569.0	NM_181860	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100783348-2	chr11	100782848	100783848	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113563, intron 18 of 18)	intron (NM_001113563, intron 18 of 18)	-12391.0	NM_031871	80860.0	Mm.37308	NM_031871	ENSMUSG00000017747	Ghdc	D11Lgp1e	GH3 domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-20029424-2	chr3	20028924	20029924	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 2 of 16)	MTD|LTR|ERVL-MaLR	5886.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20943612-2	chr9	20943112	20944112	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199432, intron 1 of 38)	intron (NM_001199432, intron 1 of 38)	9011.0	NM_001199433	13433.0	Mm.128580	NM_010066	ENSMUSG00000004099	Dnmt1	Cxxc9|Dnmt|Dnmt1o|MCMT|MTase|Met-1|Met1|MommeD2|m.MmuI	DNA methyltransferase (cytosine-5) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35267000-2	chr17	35266510	35267510	+	763.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001267808)	TTS (NM_001267808)	3887.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54986031-2	chr11	54985531	54986531	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 21 of 24)	intron (NR_138556, intron 21 of 24)	-23091.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40557000-2	chr12	40556500	40557500	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	L1_Mus3|LINE|L1	110947.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-12288067-2	chr12	12287567	12288567	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	25928.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-16124191-2	chr13	16123691	16124691	+	763.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-100768.0	NR_155430	100503142.0	Mm.359204	NR_155430		B230303A05Rik	B230303A05|EG328191	U1 small nuclear ribonucleoprotein 1C pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-60757950-4	chr19	60757456	60758456	+	763.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178421, exon 1 of 1)	3' UTR (NM_178421, exon 1 of 1)	1969.0	NM_178421	332397.0	Mm.186390	NM_178421	ENSMUSG00000072437	Nanos1	NOS-1	nanos C2HC-type zinc finger 1	protein-coding	5.5	3.0	0.0	0.0	0.0	2.0
Merged-chr18-20699531-3	chr18	20699023	20700023	+	763.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 5 of 8)	intron (NM_019737, intron 5 of 8)	-34263.0	NR_155534	102633478.0		NR_155534	ENSMUSG00000085595	Gm16090	-	predicted gene 16090	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76702273-4	chr14	76701794	76702794	+	763.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24726.0	NR_015485	73272.0	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA	0.0	17.5	5.5	0.0	9.5	2.5
Merged-chr13-54693009-3	chr13	54692519	54693519	+	763.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027396, intron 1 of 10)	intron (NR_027396, intron 1 of 10)	941.0	NR_027395	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-24208207-4	chr18	24207772	24208772	+	763.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361200, intron 1 of 12)	(TG)n|Simple_repeat|Simple_repeat	2278.0	NM_001160404	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49653023-2	chr11	49652523	49653523	+	763.416626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008029)	TTS (NM_008029)	-10572.0	NM_054037	68662.0	Mm.22802	NM_054037	ENSMUSG00000064057	Scgb3a1	HIN-1|LuLeu2|Pnsp2|UGRP2|Utgrp2	secretoglobin, family 3A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46600577-4	chr19	46600085	46601085	+	763.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146099, intron 1 of 3)	L1MB5|LINE|L1	1479.0	NM_146099	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	9.5	15.5	2.0	8.5	12.5	19.0
Merged-chr10-17431219-3	chr10	17430732	17431732	+	763.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-291996.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.0	0.0	2.5	0.0	2.5	0.0
Merged-chr9-123951346-4	chr9	123950829	123951829	+	763.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17363.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125137502-4	chr6	125136995	125137995	+	763.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_138747, exon 8 of 16)	exon (NM_138747, exon 8 of 16)	5612.0	NM_138747	110109.0	Mm.29203	NM_138747	ENSMUSG00000038279	Nop2	120kDa|A530002O17|Nol1	NOP2 nucleolar protein	protein-coding	0.0	6.5	2.0	0.0	12.0	3.5
Merged-chr6-84061491-4	chr6	84061006	84062006	+	763.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 4 of 54)	intron (NM_001077694, intron 4 of 54)	42120.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-6499054-3	chr1	6498568	6499568	+	763.366699	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001244693, intron 2 of 22)	L1MA9|LINE|L1	11837.0	NM_001244692	240690.0	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64210636-3	chr7	64210112	64211112	+	763.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039104, intron 9 of 26)	intron (NM_001039104, intron 9 of 26)	4806.0	NR_029805	387207.0		NR_029805	ENSMUSG00000065585	Mir211	Mirn211|mir-211|mmu-mir-211	microRNA 211	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-18187252-2	chr14	18186752	18187752	+	763.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51854.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70714228-2	chr8	70713671	70714671	+	763.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4372.0	NM_001195253	100502950.0	Mm.52981	NM_001195253	ENSMUSG00000095026	Gm3336	100041434|2410018E23Rik	predicted gene 3336	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr3-40946989-2	chr3	40946489	40947489	+	763.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3642.0	NM_001040399	214048.0	Mm.46782	NM_027663	ENSMUSG00000025762	Larp1b	1700108L22Rik|4933421B21Rik|AA690246|Larp2	La ribonucleoprotein domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58503993-2	chr1	58503493	58504493	+	763.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_008765, intron 1 of 17)	B4A|SINE|B4	1116.0	NM_001271526	18393.0	Mm.3411	NM_008765	ENSMUSG00000026037	Orc2	AU041563|Orc2l	origin recognition complex, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184025375-3	chr1	184024865	184025865	+	763.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8633.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149182891-2	chr4	149182391	149183391	+	763.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_207682, intron 43 of 46)	B2_Mm2|SINE|B2	-16186.0	NM_001081274	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-45410903-3	chr18	45410422	45411422	+	763.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312905, intron 2 of 10)	ORR1B1|LTR|ERVL-MaLR	142062.0	NM_001312905	140492.0	Mm.411614	NM_080465	ENSMUSG00000054477	Kcnn2	KCa2.2|SK2|SKCA2|bc|fri	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-48779708-3	chr11	48779237	48780237	+	763.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-20623.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120493015-3	chr6	120492526	120493526	+	763.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_033567, exon 1 of 1)	exon (NM_033567, exon 1 of 1)	781.0	NM_033567	94047.0	Mm.23088	NM_033567	ENSMUSG00000094626	Tmem121b	AW048664|Cecr6	transmembrane protein 121B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111731975-3	chr9	111731474	111732474	+	763.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41626.0	NM_001324546	20840.0	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding	4.5	0.0	6.5	0.0	6.5	3.5
Merged-chr11-104319466-4	chr11	104318833	104319833	+	763.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038609, intron 9 of 11)	intron (NM_001038609, intron 9 of 11)	87897.0	NM_001285454	17762.0	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141576319-2	chr7	141575819	141576819	+	763.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357068, intron 1 of 21)	intron (NM_001357068, intron 1 of 21)	14139.0	NM_007459	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22349983-4	chr16	22349479	22350479	+	763.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54991.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152447938-3	chr4	152447482	152448482	+	763.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010598, intron 1 of 15)	intron (NM_010598, intron 1 of 15)	873.0	NM_001252655	16498.0	Mm.388924	NM_010598	ENSMUSG00000028931	Kcnab2	F5|I2rf5|Kcnb3|kv-beta-2	potassium voltage-gated channel, shaker-related subfamily, beta member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-19968197-2	chr4	19967717	19968717	+	763.25	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	37522.0	NR_040768	74988.0	Mm.445292	NR_040768		4930480G23Rik	-	RIKEN cDNA 4930480G23 gene	ncRNA	6.5	5.0	12.5	8.5	1.0	10.0
Merged-chr4-148102377-4	chr4	148101915	148102915	+	763.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027426, exon 7 of 7)	3' UTR (NM_027426, exon 7 of 7)	-14351.0	NM_001301281	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24426181-2	chr5	24425681	24426681	+	763.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009207, intron 1 of 22)	intron (NM_009207, intron 1 of 22)	949.0	NM_009207	20535.0	Mm.4580	NM_009207	ENSMUSG00000028962	Slc4a2	Ae2|B3RP	solute carrier family 4 (anion exchanger), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-56262226-4	chr4	56261735	56262735	+	763.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	479190.0	NM_025271	11471.0	Mm.251434	NM_025271	ENSMUSG00000070980	Actl7b	Gm26657|Tact1	actin-like 7b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124897422-4	chr2	124896900	124897900	+	763.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-170727.0	NM_175034	317750.0	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30699898-3	chr14	30699415	30700415	+	763.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14934.0	NM_019460	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	0.0	1.5	0.0	0.0	1.5	6.0
Merged-chr12-35182886-4	chr12	35182378	35183378	+	763.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12019.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	5.0	3.0	3.0	6.0	5.5	2.0
Merged-chr4-7245949-2	chr4	7245452	7246452	+	763.200012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-255229.0	NM_145711	252838.0	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding	0.0	0.0	0.0	2.0	0.0	0.0
Merged-chr10-10459783-3	chr10	10459300	10460300	+	763.1777950000001	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_001127353, intron 1 of 36)	MamRep38|DNA|hAT	12514.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	129.5	392.5	204.0	119.0	223.5	146.5
Merged-chr5-143471729-4	chr5	143471230	143472230	+	763.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 2 of 14)	intron (NM_144915, intron 2 of 14)	7237.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126301421-4	chr4	126300913	126301913	+	763.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199473, intron 2 of 3)	CpG	14619.0	NM_199473	329941.0	Mm.296327	NM_199473	ENSMUSG00000056174	Col8a2	AI429819	collagen, type VIII, alpha 2	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr2-44992694-2	chr2	44992194	44993194	+	763.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 9 of 9)	intron (NM_001355291, intron 9 of 9)	30483.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-26105552-6	chr16	26105066	26106066	+	763.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_173379, exon 1 of 15)	exon (NM_173379, exon 1 of 15)	218.0	NM_173379	210530.0	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19697002-2	chr7	19696502	19697502	+	763.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_009696, exon 4 of 4)	exon (NM_009696, exon 4 of 4)	1396.0	NM_001305819	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20768485-2	chr10	20767997	20768997	+	763.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43419.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	8.0	1.0	4.5	0.5	6.0	2.0
Merged-chr16-18212031-2	chr16	18211531	18212531	+	763.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_015575, intron 1 of 2)	intron (NR_015575, intron 1 of 2)	1502.0	NR_027843	66779.0	Mm.387525	NR_015575		4933432I09Rik	-	RIKEN cDNA 4933432I09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152756226-2	chr2	152755726	152756726	+	763.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_053091, intron 2 of 4)	intron (NM_053091, intron 2 of 4)	2053.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	2.0	1.0	1.5	0.0	3.0	2.5
Merged-chr11-82007930-4	chr11	82007397	82008397	+	763.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17D|LTR|ERVK	-27680.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32568221-3	chr11	32567721	32568721	+	763.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	L1MB1|LINE|L1	34955.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	7.0	2.0	6.5	3.5	9.0	7.0
Merged-chr14-104849438-3	chr14	104848930	104849930	+	763.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015593, intron 2 of 5)	MLTR25C|LTR|ERVK	210283.0	NR_015593	320249.0	Mm.320725	NR_015593	ENSMUSG00000115432	D130009I18Rik	-	RIKEN cDNA D130009I18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89281258-6	chr3	89280788	89281788	+	763.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162425)	promoter-TSS (NM_001162425)	-337.0	NM_001162425	13636.0	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37504724-3	chr10	37504213	37505213	+	763.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-365787.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90197284-2	chr9	90196804	90197804	+	763.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003911, intron 23 of 23)	intron (NM_001003911, intron 23 of 23)	34326.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75055881-2	chr8	75055381	75056381	+	763.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136259, intron 7 of 15)	intron (NM_001136259, intron 7 of 15)	22195.0	NM_011622	21968.0	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94296583-3	chr13	94296088	94297088	+	763.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10757.0	NM_001346609	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45579048-4	chr17	45578542	45579542	+	763.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-5781.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106452384-1	chr9	106451884	106452884	+	763.0	f0_balb.idr	3' UTR (NM_029631, exon 4 of 4)	3' UTR (NM_029631, exon 4 of 4)	-1454.0	NM_021567	59092.0	Mm.286394	NM_021567	ENSMUSG00000023495	Pcbp4	1200003L19Rik|AlphaCP-4	poly(rC) binding protein 4	protein-coding	0.0	6.5	2.0	0.0	10.0	3.0
Merged-chr17-84117959-3	chr17	84117454	84118454	+	763.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39294.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23965818-2	chr17	23965319	23966319	+	763.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9411.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	15.0	17.0	13.0	20.0	17.0	11.5
Merged-chr14-122635346-2	chr14	122634846	122635846	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 7 of 24)	B2_Mm2|SINE|B2	101018.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128784152-2	chr2	128783635	128784635	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 15 of 18)	intron (NM_008587, intron 15 of 18)	-34168.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	2.5	10.0	10.5	20.5	14.0	3.5
Merged-chr10-19549684-3	chr10	19549173	19550173	+	763.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42276.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79202372-4	chr3	79201867	79202867	+	763.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10552.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	0.0	5.5	1.0	14.5	1.5	2.0
Merged-chr11-119393443-1	chr11	119392943	119393943	+	763.0	f0_balb.idr	Intergenic	Intergenic	2971.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	5.5	62.0	44.5	28.0	48.0	47.5
Merged-chr7-25286738-2	chr7	25286238	25287238	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302811, intron 7 of 20)	intron (NM_001302811, intron 7 of 20)	4559.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59159642-2	chr11	59159142	59160142	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173785, intron 1 of 2)	intron (NM_173785, intron 1 of 2)	4103.0	NM_001270791	216792.0	Mm.266175	NM_173785	ENSMUSG00000049287	Iba57	4930543L23Rik|A230051G13Rik|C1orf69	IBA57 homolog, iron-sulfur cluster assembly	protein-coding	0.0	0.5	2.0	2.0	0.0	1.5
Merged-chr15-8706491-3	chr15	8705993	8706993	+	763.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148938, intron 2 of 9)	intron (NM_148938, intron 2 of 9)	4314.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-86172079-1	chr5	86171579	86172579	+	763.0	f0_balb.idr	intron (NM_172712, intron 1 of 32)	intron (NM_172712, intron 1 of 32)	664.0	NM_172712	231380.0	Mm.34012	NM_172712	ENSMUSG00000035898	Uba6	4930542H01|5730469D23Rik|AU021846|AW124799|E1-L2|Ube1l2	ubiquitin-like modifier activating enzyme 6	protein-coding	1.5	2.5	2.0	4.0	2.5	1.0
Merged-chr7-121035472-3	chr7	121034959	121035959	+	763.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021554, intron 1 of 4)	intron (NM_021554, intron 1 of 4)	1014.0	NM_021554	59052.0	Mm.29122	NM_021554	ENSMUSG00000030876	Mettl9	0610012D09Rik|AA517660|Drev|MNCb-5680	methyltransferase like 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98318608-2	chr11	98318108	98319108	+	763.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11037.0	NM_010895	18013.0	Mm.4814	NM_010895	ENSMUSG00000038255	Neurod2	Ndrf|bHLHa1	neurogenic differentiation 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-20067545-1	chr1	20067045	20068045	+	763.0	f0_balb.idr	intron (NM_153179, intron 66 of 66)	RLTR35B_MM|LTR|ERVL	-288909.0	NR_045734	75028.0	Mm.417820	NR_045734	ENSMUSG00000089914	4930486I03Rik	-	RIKEN cDNA 4930486I03 gene	ncRNA	7.5	0.0	3.5	0.0	0.0	0.5
Merged-chr3-154428527-2	chr3	154428023	154429023	+	763.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	97702.0	NR_040387	99686.0	Mm.38082	NR_040387	ENSMUSG00000093738	AI606473	-	expressed sequence AI606473	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74265134-2	chr17	74264639	74265639	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133771, intron 1 of 8)	intron (NM_133771, intron 1 of 8)	29724.0	NM_133771	76890.0	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding	0.0	4.0	3.0	5.0	3.0	0.0
Merged-chr4-62736219-2	chr4	62735719	62736719	+	763.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62245.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95450651-2	chr3	95450151	95451151	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037737, intron 2 of 21)	intron (NM_001037737, intron 2 of 21)	16261.0	NM_001037737	11863.0	Mm.250265	NM_009709	ENSMUSG00000015522	Arnt	D3Ertd557e|Drnt|ESTM42|Hif1b|W08714|bHLHe2|mKIAA4051	aryl hydrocarbon receptor nuclear translocator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93796070-2	chr16	93795570	93796570	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027293, intron 27 of 36)	intron (NM_027293, intron 27 of 36)	-1169.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3622381-1	chr19	3621881	3622881	+	763.0	f1_c57bl6.idr	intron (NM_008513, intron 8 of 22)	intron (NM_008513, intron 8 of 22)	-46632.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	0.0	14.5	0.0	5.0	8.5	2.5
Merged-chr1-183197736-1	chr1	183197236	183198236	+	763.0	f0_balb.idr	intron (NM_001278218, intron 1 of 8)	intron (NM_001278218, intron 1 of 8)	23793.0	NM_026866	68897.0	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched RND transporter family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90463810-2	chr2	90463310	90464310	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 6 of 23)	MIRb|SINE|MIR	15364.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36041577-2	chr17	36041077	36042077	+	763.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347382, exon 4 of 9)	exon (NM_001347382, exon 4 of 9)	1115.0	NM_010399	15051.0	Mm.195061	NM_010399		H2-T9	H-2T9	histocompatibility 2, T region locus 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86024619-3	chr12	86024105	86025105	+	763.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081423, intron 33 of 33)	intron (NM_001081423, intron 33 of 33)	54436.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-133711745-2	chr3	133711245	133712245	+	763.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-167355.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121426734-1	chr10	121426234	121427234	+	763.0	f0_c57.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	49516.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	3.0	14.0	9.5	3.0	14.0	9.5
Merged-chr13-110567706-3	chr13	110567203	110568203	+	763.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	172659.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91033279-2	chr2	91032779	91033779	+	763.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2348.0	NM_009023	19400.0	Mm.1272	NM_009023	ENSMUSG00000002104	Rapsn	43kDa|Nraps|Raps|rapsyn	receptor-associated protein of the synapse	protein-coding	3.5	0.0	0.0	3.5	0.0	0.0
Merged-chr11-106704858-1	chr11	106704358	106705358	+	763.0	f0_balb.idr	intron (NM_001305158, intron 2 of 14)	intron (NM_001305158, intron 2 of 14)	10423.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105687621-2	chr8	105687121	105688121	+	763.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357333, exon 5 of 39)	exon (NM_001357333, exon 5 of 39)	1347.0	NM_001357333	234695.0	Mm.471640	NM_001033320	ENSMUSG00000050357	Carmil2	CG1399-PB|D130029J02Rik|Gm585|Rltpr	capping protein regulator and myosin 1 linker 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75623526-2	chr11	75623026	75624026	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008850, intron 10 of 11)	RSINE1|SINE|B4	-7494.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	5.0	4.0	1.5	1.5	2.0	5.5
Merged-chr4-131858511-2	chr4	131858011	131859011	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025297, intron 4 of 9)	MIR3|SINE|MIR	15040.0	NM_025297	26922.0	Mm.192706	NM_025297	ENSMUSG00000028910	Mecr	AI195831|NRBF-1|Nrbf1	mitochondrial trans-2-enoyl-CoA reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21309221-3	chr9	21308759	21309759	+	763.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110300, intron 3 of 10)	intron (NM_001110300, intron 3 of 10)	3074.0	NM_001110300	11768.0	Mm.22239	NM_009678	ENSMUSG00000003309	Ap1m2	D9Ertd818e|[m]1B|mu1B	adaptor protein complex AP-1, mu 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38604154-2	chr16	38603654	38604654	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 11 of 11)	intron (NM_020260, intron 11 of 11)	41340.0	NM_026407	67846.0	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71981120-1	chr8	71980620	71981620	+	763.0	f1_c57bl6.idr	Intergenic	B3A|SINE|B2	28506.0	NM_024444	72054.0	Mm.160020	NM_024444	ENSMUSG00000003484	Cyp4f18	1810054N16Rik|Cyp4f3|Cypf18	cytochrome P450, family 4, subfamily f, polypeptide 18	protein-coding	3.5	12.0	3.0	0.0	0.0	1.0
Merged-chr3-117979336-3	chr3	117978836	117979836	+	763.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110400.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-30024918-2	chr17	30024418	30025418	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151443, intron 1 of 4)	intron (NR_151443, intron 1 of 4)	19879.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-69563282-3	chr18	69562785	69563785	+	763.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 6 of 19)	intron (NM_001361128, intron 6 of 19)	217125.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73623242-2	chr15	73622742	73623742	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033219, intron 1 of 7)	intron (NM_001033219, intron 1 of 7)	1502.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59814900-2	chr4	59814400	59815400	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	intron (NM_172468, intron 1 of 8)	9250.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	0.0	0.0	10.0	0.0	1.0	2.0
Merged-chr2-165027374-1	chr2	165026874	165027874	+	763.0	f0_balb.idr	intron (NM_144892, intron 1 of 7)	intron (NM_144892, intron 1 of 7)	7405.0	NM_144892	228869.0	Mm.233080	NM_144892	ENSMUSG00000039804	Ncoa5	CIA	nuclear receptor coactivator 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-144908276-1	chr4	144907776	144908776	+	763.0	f0_balb.idr	intron (NM_001357274, intron 2 of 6)	L2a|LINE|L2	15139.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-30032857-2	chr19	30032357	30033357	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144873, intron 1 of 15)	B3|SINE|B2	2344.0	NM_144873	109113.0	Mm.313364	NM_144873	ENSMUSG00000024817	Uhrf2	2310065A22Rik|AI426270|AW214556|D130071B19Rik|Nirf	ubiquitin-like, containing PHD and RING finger domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139379679-1	chr4	139379179	139380179	+	763.0	f1_c57bl6.idr	promoter-TSS (NM_001160319)	promoter-TSS (NM_001160319)	-980.0	NM_001160319	69116.0	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	9.0	27.0	10.0	6.0	15.5	11.5
Merged-chr1-60860193-2	chr1	60859693	60860693	+	763.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-48832.0	NM_009843	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr16-63892531-1	chr16	63892031	63893031	+	763.0	f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	-28374.0	NM_010140	13837.0	Mm.1977	NM_010140	ENSMUSG00000052504	Epha3	AW492086|Cek4|EK4|ETK1|End3|Hek|Hek4|Mek4|Tyro4	Eph receptor A3	protein-coding	0.0	0.0	2.0	4.5	2.5	0.0
Merged-chr19-41344448-2	chr19	41343948	41344948	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	40622.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71950367-1	chr6	71949867	71950867	+	763.0	f0_balb.idr	intron (NM_009088, intron 16 of 33)	intron (NM_009088, intron 16 of 33)	41314.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-81109524-2	chr16	81109024	81110024	+	763.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-91173.0	NM_001113208	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-78867480-2	chr2	78866980	78867980	+	763.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1567.0	NM_009454	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-105421462-2	chr11	105420962	105421962	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039242, intron 4 of 5)	L2|LINE|L2	35273.0	NM_172568	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	18.5	43.5	35.5	18.0	41.5	34.5
Merged-chr1-165678302-2	chr1	165677802	165678802	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	29792.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105045418-5	chr3	105044784	105045784	+	762.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 1 of 5)	intron (NM_030249, intron 1 of 5)	7669.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135145775-4	chr5	135145301	135146301	+	762.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3910.0	NM_013763	27368.0	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80116949-2	chr12	80116452	80117452	+	762.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3939.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	20.0	17.0	7.5	4.5	15.5	14.5
Merged-chr7-97789375-2	chr7	97788824	97789824	+	762.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357364, intron 1 of 14)	CpG	783.0	NM_001357364	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	23.0	31.0	34.5	6.0	49.5	32.5
Merged-chr3-89321903-3	chr3	89321419	89322419	+	762.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010108, intron 1 of 4)	CpG	960.0	NM_010108	13638.0	Mm.331159	NM_010108	ENSMUSG00000028039	Efna3	AW494418|EFL-2|Ehk1-L|Epl3|LERK-3	ephrin A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84454230-3	chr2	84453730	84454730	+	762.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355271, intron 3 of 8)	intron (NM_001355271, intron 3 of 8)	19944.0	NM_011576	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	0.0	1.0	2.0	8.0	9.0	3.0
Merged-chr5-142764489-3	chr5	142763995	142764995	+	762.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122730, intron 12 of 27)	intron (NM_001122730, intron 12 of 27)	52892.0	NM_178242	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35505641-3	chr2	35505109	35506109	+	762.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44160.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132390871-3	chr1	132390363	132391363	+	762.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311107)	promoter-TSS (NM_001311107)	523.0	NM_178874	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0.0	3.5	1.5	2.5	0.5	11.5
Merged-chr1-45837876-2	chr1	45837376	45838376	+	762.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42710.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154930328-2	chr4	154929833	154930833	+	762.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2256.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	7.0	17.5	5.0	15.5	16.0	4.0
Merged-chr10-61752018-2	chr10	61751518	61752518	+	762.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_207000, intron 3 of 8)	intron (NM_207000, intron 3 of 8)	-22719.0	NR_039568	100628583.0		NR_039568	ENSMUSG00000093017	Mir5108	mmu-mir-5108|mu-mir-5108	microRNA 5108	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127746573-3	chr10	127746123	127747123	+	762.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_198035, exon 2 of 2)	3' UTR (NM_198035, exon 2 of 2)	5175.0	NM_007412	11536.0	Mm.2857	NM_007412	ENSMUSG00000058396	Gpr182	AM-R|Admr|G10-D|Gpcr17|Gpcr22|MB10|NOW	G protein-coupled receptor 182	protein-coding	5.0	3.5	10.5	2.5	3.5	6.5
Merged-chr2-38209344-3	chr2	38208849	38209849	+	762.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146122, intron 2 of 21)	ORR1F|LTR|ERVL-MaLR	78035.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32596391-2	chr11	32595844	32596844	+	762.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 7 of 18)	(TCTG)n|Simple_repeat|Simple_repeat	-46211.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	4.5	11.0	8.0	1.0	5.0	5.5
Merged-chr10-127731587-3	chr10	127731066	127732066	+	762.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001199971, exon 8 of 8)	3' UTR (NM_001199971, exon 8 of 8)	6174.0	NM_009312	21334.0	Mm.2374	NM_009312	ENSMUSG00000025400	Tac2	PPT-B|Tac3	tachykinin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-66788442-3	chr4	66787907	66788907	+	762.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39144.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	4.0	25.5	11.5	4.0	17.5	12.0
Merged-chr6-13665870-4	chr6	13665387	13666387	+	762.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175312, intron 1 of 4)	intron (NM_175312, intron 1 of 4)	12079.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	2.0	4.5	7.0	2.0	3.0	6.5
Merged-chr8-123790188-2	chr8	123789688	123790688	+	762.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15808.0	NM_009003	19341.0	Mm.9221	NM_009003	ENSMUSG00000019478	Rab4a	AI848268|Rab4	RAB4A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155710855-3	chr4	155710360	155711360	+	762.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026899, intron 1 of 4)	intron (NM_026899, intron 1 of 4)	6045.0	NM_026899	68991.0	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	12.5	34.0	26.0	12.5	34.0	26.0
Merged-chr16-95648043-4	chr16	95647563	95648563	+	762.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54344.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113155427-3	chr12	113154942	113155942	+	762.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134041)	promoter-TSS (NM_134041)	-979.0	NM_134041	104732.0	Mm.87616	NM_134041	ENSMUSG00000037466	Tedc1	4930427A07Rik|AA536649|mFLJ00116	tubulin epsilon and delta complex 1	protein-coding	96.0	289.0	206.5	93.5	224.5	180.5
Merged-chr16-87712218-3	chr16	87711724	87712724	+	762.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	13270.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34802354-3	chr1	34801893	34802893	+	762.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183019, intron 1 of 9)	intron (NM_183019, intron 1 of 9)	671.0	NM_183019	226970.0	Mm.41604	NM_183019	ENSMUSG00000037509	Arhgef4	9330140K16Rik|Asef	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-94476535-3	chr3	94476038	94477038	+	762.755554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1757.0	NM_001289616	78784.0	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|ETR-1|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	2.5	3.5	7.0	1.5	0.0	1.0
Merged-chr11-70463932-2	chr11	70463432	70464432	+	762.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001348337, exon 7 of 14)	exon (NM_001348337, exon 7 of 14)	-3948.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-125059263-4	chr4	125058770	125059770	+	762.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175223, intron 4 of 5)	intron (NM_175223, intron 4 of 5)	6387.0	NM_175223	75563.0	Mm.50304	NM_175223	ENSMUSG00000042707	Dnali1	1700023A09Rik|AW049135	dynein, axonemal, light intermediate polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53308260-2	chr11	53307760	53308760	+	762.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7781.0	NM_008300	15525.0	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70151273-4	chr11	70150769	70151769	+	762.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-15354.0	NM_001204252	17312.0	Mm.252405	NM_010796	ENSMUSG00000000318	Clec10a	CD301a|M-ASGP-BP-1|Mgl|Mgl1	C-type lectin domain family 10, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131107798-2	chr1	131107298	131108298	+	762.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9955.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0.0	2.0	0.0	0.0	0.0	0.0
Merged-chr15-86142684-2	chr15	86142099	86143099	+	762.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 12 of 12)	intron (NM_145475, intron 12 of 12)	-43129.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	1.5	1.5	3.5	2.5	0.0	4.5
Merged-chr17-25862739-2	chr17	25862239	25863239	+	762.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026633)	TTS (NM_026633)	-1224.0	NM_001163766	106618.0	Mm.35470	NM_134124	ENSMUSG00000073434	Wdr90	3230401M21Rik|AI551153|mKIAA1924	WD repeat domain 90	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4057023-2	chr19	4056523	4057523	+	762.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001362043)	TTS (NM_001362043)	2424.0	NM_144869	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-104467978-3	chr14	104467481	104468481	+	762.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011143)	promoter-TSS (NM_011143)	18.0	NM_011143	18996.0	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-15802119-3	chr19	15801650	15802650	+	762.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122472.0	NM_001205339	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119438976-4	chr8	119438485	119439485	+	762.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027950, intron 1 of 5)	intron (NM_027950, intron 1 of 5)	1823.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35441693-3	chr2	35441192	35442192	+	762.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	19757.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-59604131-3	chr1	59603629	59604629	+	762.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013771, intron 12 of 19)	intron (NM_001013771, intron 12 of 19)	66705.0	NM_009460	22218.0	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191881259-3	chr1	191880798	191881798	+	762.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25483.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr13-48872999-2	chr13	48872499	48873499	+	762.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2114.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64625042-3	chr5	64624524	64625524	+	762.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14325.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	13.0	31.0	33.5	9.5	21.0	13.0
Merged-chr18-53313943-2	chr18	53313443	53314443	+	762.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	68281.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35633190-2	chr9	35632690	35633690	+	762.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15012.0	NM_001167592	100312956.0	Mm.475850	NM_001167592	ENSMUSG00000094995	Pate3	Gm17365|Pate-dj	prostate and testis expressed 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-119401715-4	chr6	119401240	119402240	+	762.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197985, intron 1 of 7)	MTD|LTR|ERVL-MaLR	-13006.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47405730-4	chr19	47405238	47406238	+	762.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 2 of 14)	G-rich|Low_complexity|Low_complexity	58673.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	10.5	11.5	7.0	5.0	21.0	17.5
Merged-chr16-11065541-2	chr16	11065041	11066041	+	762.625	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009223)	promoter-TSS (NM_009223)	-757.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5886383-3	chr11	5885861	5886861	+	762.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8105.0	NM_008894	18972.0	Mm.35788	NM_008894	ENSMUSG00000020471	Pold2	50kDa|p50|po1D2	polymerase (DNA directed), delta 2, regulatory subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-18625240-4	chr19	18624721	18625721	+	762.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	6592.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120792336-2	chr6	120791836	120792836	+	762.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081048, intron 7 of 9)	intron (NM_001081048, intron 7 of 9)	18568.0	NM_001081048	71803.0	Mm.425340	NM_001081048	ENSMUSG00000004902	Slc25a18	1500015I14Rik|AW125787	solute carrier family 25 (mitochondrial carrier), member 18	protein-coding	2.0	4.5	0.0	0.0	0.0	0.0
Merged-chr5-104955441-4	chr5	104954940	104955940	+	762.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030239, intron 10 of 15)	intron (NM_030239, intron 10 of 15)	27277.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	3.5	0.0	5.5	0.0	1.5	4.5
Merged-chr3-59202370-6	chr3	59201849	59202849	+	762.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	-7245.0	NM_001302203	84111.0	Mm.60267	NM_032399	ENSMUSG00000051431	Gpr87	-	G protein-coupled receptor 87	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-73693661-3	chr18	73693150	73694150	+	762.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008540, intron 1 of 11)	intron (NM_008540, intron 1 of 11)	10091.0	NM_008540	17128.0	Mm.100399	NM_008540	ENSMUSG00000024515	Smad4	AW743858|D18Wsu70e|DPC4|Madh4	SMAD family member 4	protein-coding	16.0	0.5	4.5	3.0	2.0	0.5
Merged-chr1-171567059-3	chr1	171566574	171567574	+	762.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018729, intron 1 of 8)	intron (NM_018729, intron 1 of 8)	7881.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	1.0	2.0	3.0	0.0	0.0	0.0
Merged-chr12-40656608-3	chr12	40656105	40657105	+	762.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 8 of 52)	intron (NM_172803, intron 8 of 52)	210552.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34047958-3	chr10	34047464	34048464	+	762.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162937, intron 1 of 6)	intron (NM_001162937, intron 1 of 6)	-3651.0	NM_001081165	270711.0	Mm.303077	NM_001081165	ENSMUSG00000039508	Fam26d	4732454E20Rik|AI586164|Calhm4|Gm643	family with sequence similarity 26, member D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118443350-4	chr11	118442809	118443809	+	762.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204130)	promoter-TSS (NM_001204130)	-225.0	NM_001204130	56745.0	Mm.23845	NM_019959	ENSMUSG00000017446	C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134401607-4	chr4	134401093	134402093	+	762.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285872, intron 1 of 10)	(GGGTG)n|Simple_repeat|Simple_repeat	-1319.0	NM_001285874	100163.0	Mm.22116	NM_133880	ENSMUSG00000037366	Pafah2	2310074E22Rik|AI507170	platelet-activating factor acetylhydrolase 2	protein-coding	7.0	5.0	0.0	5.0	0.0	2.0
Merged-chr12-36217115-4	chr12	36216589	36217589	+	762.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361098, intron 5 of 8)	intron (NM_001361098, intron 5 of 8)	1129.0	NM_027699	71156.0	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr15-82125994-5	chr15	82125500	82126500	+	762.533325	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028897, intron 30 of 30)	B2_Mm2|SINE|B2	-1922.0	NM_172428	76457.0	Mm.440373	NM_172428	ENSMUSG00000068114	Ccdc134	2310042L06Rik|AW208859	coiled-coil domain containing 134	protein-coding	28.0	63.5	42.5	17.5	22.0	12.5
Merged-chr13-48871410-4	chr13	48871083	48872083	+	762.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011078)	promoter-TSS (NM_011078)	-698.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-10438764-2	chr8	10438264	10439264	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001319151, intron 17 of 34)	intron (NM_001319151, intron 17 of 34)	284853.0	NM_001319151	244281.0	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54715904-2	chr6	54715407	54716407	+	762.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34283.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	0.5	5.0	7.0	3.5	5.5	2.0
Merged-chr7-16095558-2	chr7	16095058	16096058	+	762.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347559, exon 13 of 14)	exon (NM_001347559, exon 13 of 14)	-3022.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95385797-2	chr11	95385297	95386297	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016752, intron 1 of 8)	intron (NM_016752, intron 1 of 8)	941.0	NM_001357797	110172.0	Mm.4593	NM_016752	ENSMUSG00000020873	Slc35b1	UGTrel1|Ugalt2	solute carrier family 35, member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129913685-2	chr2	129913185	129914185	+	762.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98655.0	NM_009374	21818.0	Mm.2961	NM_009374	ENSMUSG00000027401	Tgm3	AI893889|TG E|TG(E)|TGE|TGase E|TGase-3|we	transglutaminase 3, E polypeptide	protein-coding	2.0	18.0	5.5	55.5	168.5	91.5
Merged-chr4-132312903-2	chr4	132312403	132313403	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027925, intron 8 of 8)	B1_Mm|SINE|Alu	2200.0	NR_028537	100217437.0		NR_028537		Snord99	MBII-420	small nucleolar RNA, C/D box 99	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91847625-2	chr12	91847125	91848125	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039089, intron 1 of 20)	intron (NM_001039089, intron 1 of 20)	1532.0	NM_001039089	20338.0	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103017378-2	chr14	103016878	103017878	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 2 of 2)	intron (NR_045657, intron 2 of 2)	16425.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126488656-2	chr7	126488156	126489156	+	762.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163713, exon 4 of 9)	exon (NM_001163713, exon 4 of 9)	1301.0	NM_001163713	233870.0	Mm.197829	NM_172745	ENSMUSG00000073838	Tufm	2300002G02Rik|C76308|C76389|EF-TuMT|EFTU	Tu translation elongation factor, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-4429468-2	chr10	4428940	4429940	+	762.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002891)	promoter-TSS (NR_002891)	-274.0	NR_002891	433224.0	Mm.153111	NR_002891	ENSMUSG00000112693	Gm5512	EG433224	required for meiotic nuclear division 1 pseudogene	pseudo	7.0	15.5	14.0	1.5	10.0	3.0
Merged-chr11-98916750-2	chr11	98916250	98917250	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025779, intron 8 of 11)	B2_Mm2|SINE|B2	8599.0	NM_011799	23834.0	Mm.20912	NM_011799	ENSMUSG00000017499	Cdc6	CDC18L	cell division cycle 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21840385-2	chr9	21839885	21840885	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177030, intron 9 of 49)	intron (NM_177030, intron 9 of 49)	4875.0	NM_001080940	624219.0	Mm.440264	NM_001080940	ENSMUSG00000047822	Angptl8	EG624219|Gm6484|Rifl	angiopoietin-like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148550946-2	chr5	148550446	148551446	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	727.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	33.5	108.0	52.0	38.5	67.5	73.0
Merged-chr7-123373969-2	chr7	123373469	123374469	+	762.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-4013.0	NM_025304	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-58075539-2	chr14	58075039	58076039	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013518, intron 1 of 2)	CpG	2853.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-104607912-2	chr11	104607412	104608412	+	762.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016780)	promoter-TSS (NM_016780)	-88.0	NM_016780	16416.0	Mm.87150	NM_016780	ENSMUSG00000020689	Itgb3	CD61|GP3A|INGRB3	integrin beta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16278589-2	chr19	16278089	16279089	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 2 of 6)	intron (NM_008139, intron 2 of 6)	36415.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74722315-2	chr15	74721815	74722815	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198607, intron 1 of 1)	intron (NM_198607, intron 1 of 1)	1081.0	NM_198607	223626.0	Mm.268603	NM_198607	ENSMUSG00000056665	Them6	4930572J05Rik	thioesterase superfamily member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126779148-2	chr7	126778648	126779648	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025347, intron 4 of 4)	intron (NM_025347, intron 4 of 4)	2173.0	NM_025347	66090.0	Mm.27114	NM_025347	ENSMUSG00000042675	Ypel3	0610043B10Rik|1190001G19Rik|Suap	yippee like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22842591-1	chr11	22842091	22843091	+	762.5	f0_balb.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	17144.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84452842-2	chr12	84452342	84453342	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173756, intron 1 of 5)	B1_Mur4|SINE|Alu	1334.0	NM_173756	217708.0	Mm.311904	NM_173756	ENSMUSG00000085793	Lin52	5830457H20Rik	lin-52 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115636860-2	chr11	115636360	115637360	+	762.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8565.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-97697499-2	chr1	97696999	97697999	+	762.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35481.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122049330-2	chr5	122048830	122049830	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312908, intron 1 of 22)	intron (NM_001312908, intron 1 of 22)	521.0	NM_001312908	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr3-107605415-2	chr3	107604915	107605915	+	762.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007441, exon 4 of 4)	3' UTR (NM_007441, exon 4 of 4)	10384.0	NM_007441	11694.0	Mm.10112	NM_007441	ENSMUSG00000014603	Alx3	-	aristaless-like homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139296465-4	chr7	139295925	139296925	+	762.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47943.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	22.0	37.5	28.5	33.0	24.0	28.5
Merged-chr7-16494048-2	chr7	16493548	16494548	+	762.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172739)	TTS (NM_172739)	-17268.0	NM_008718	18142.0	Mm.145821	NM_008718	ENSMUSG00000001988	Npas1	MOP5|bHLHe11	neuronal PAS domain protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-108927220-2	chr7	108926720	108927720	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175532, intron 1 of 2)	intron (NM_175532, intron 1 of 2)	2938.0	NM_175532	244202.0	Mm.37991	NM_175532	ENSMUSG00000049709	Nlrp10	6430548I20Rik|Nalp10|Napl10|PAN5|Pynod	NLR family, pyrin domain containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-64836778-2	chr11	64836279	64837279	+	762.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	-142256.0	NM_023479	68626.0	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	11.5	10.0	13.0	0.0	0.0	0.0
Merged-chr7-134552113-2	chr7	134551613	134552613	+	762.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118574.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-126478669-2	chr2	126478169	126479169	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 3 of 27)	intron (NM_001359975, intron 3 of 27)	12884.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45241154-2	chr9	45240654	45241654	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 1 of 4)	intron (NM_001198971, intron 1 of 4)	25553.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-113388626-2	chr8	113388126	113389126	+	762.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-128656.0	NR_110476	78048.0	Mm.252797	NR_110476		4930571O06Rik	-	RIKEN cDNA 4930571O06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109253534-2	chr3	109253034	109254034	+	762.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-87149.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	9.0	22.5	18.5	9.0	23.0	23.5
Merged-chr16-30513278-2	chr16	30512777	30513777	+	762.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172614, exon 10 of 10)	3' UTR (NM_172614, exon 10 of 10)	37301.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	0.0	4.0	4.5	0.0	1.5	3.5
Merged-chr7-101907772-2	chr7	101907272	101908272	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025605, intron 1 of 4)	intron (NM_025605, intron 1 of 4)	-1413.0	NM_001081679	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107868574-2	chr13	107868074	107869074	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	21490.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36143096-2	chr17	36142596	36143596	+	762.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1922.0	NR_033517	675325.0	Mm.75890	NR_033517	ENSMUSG00000038311	2410017I17Rik	-	RIKEN cDNA 2410017I17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10308477-2	chr19	10307977	10308977	+	762.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3600.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	1.5	0.5	1.0	3.0	0.5	2.5
Merged-chr5-113646341-2	chr5	113645841	113646841	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	-2738.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95656424-2	chr3	95655924	95656924	+	762.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2297.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.0	2.5	2.0	0.0	10.0	3.5
Merged-chr7-19068991-3	chr7	19068489	19069489	+	762.483337	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031255, intron 5 of 5)	intron (NM_031255, intron 5 of 5)	-7211.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32574714-3	chr4	32574214	32575214	+	762.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109661, intron 3 of 4)	B3|SINE|B2	-3052.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	0.0	1.5	2.0	5.5	7.5	7.5
Merged-chr11-57791326-4	chr11	57790829	57791829	+	762.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10138.0	NR_131042	76516.0	Mm.28485	NR_131042	ENSMUSG00000087165	2010001A14Rik	-	RIKEN cDNA 2010001A14 gene	ncRNA	0.0	0.0	1.5	0.0	3.0	3.0
Merged-chr11-87736848-4	chr11	87736342	87737342	+	762.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009296)	promoter-TSS (NM_009296)	-709.0	NM_001355753	20922.0	Mm.622	NM_009296	ENSMUSG00000020485	Supt4a	AL022777|Supt4h|Supt4h1|Supt4h1a	suppressor of Ty 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-105574244-4	chr10	105573657	105574657	+	762.424988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038032)	promoter-TSS (NR_038032)	322.0	NM_177368	278279.0	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	3.0	2.0	0.0	0.0	1.5	0.0
Merged-chr18-5124873-4	chr18	5124364	5125364	+	762.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40867.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138210818-4	chr1	138210324	138211324	+	762.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35519.0	NM_001268286	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79514130-3	chr15	79513628	79514628	+	762.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2280.0	NM_134090	105785.0	Mm.298199	NM_134090	ENSMUSG00000010830	Kdelr3	AI173274	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84266377-2	chr17	84265877	84266877	+	762.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 30 of 37)	PB1D7|SINE|Alu	-78430.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-68269827-2	chr15	68269328	68270328	+	762.366699	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-10972.0	NM_198644	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	3.5	11.5	8.5	6.5	3.5	4.5
Merged-chr1-54913629-2	chr1	54913129	54914129	+	762.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	12758.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147725813-4	chr5	147725335	147726335	+	762.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010228, exon 1 of 30)	5' UTR (NM_010228, exon 1 of 30)	153.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122652568-2	chr2	122652068	122653068	+	762.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11765.0	NR_030547	387165.0		NR_030547	ENSMUSG00000076309	Mir147	Mirn147|mmu-mir-147	microRNA 147	ncRNA	0.0	0.0	2.0	0.0	0.0	2.0
Merged-chr2-150833707-2	chr2	150833207	150834207	+	762.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 12 of 12)	intron (NR_151505, intron 12 of 12)	8863.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21488784-3	chr5	21488286	21489286	+	762.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199632, intron 19 of 20)	HAL1|LINE|L1	-54741.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-64831844-4	chr8	64831341	64832341	+	762.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178633, intron 2 of 14)	intron (NM_178633, intron 2 of 14)	18083.0	NM_178633	77113.0	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|8530402H02Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80294088-4	chr18	80293559	80294559	+	762.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001190373)	TTS (NM_001190373)	37753.0	NM_025861	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90549583-3	chr2	90549074	90550074	+	762.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	RSINE1|SINE|B4	31073.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	32.5	26.0	27.5	28.0	27.0	45.5
Merged-chr10-77539839-3	chr10	77539421	77540421	+	762.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 1 of 15)	intron (NM_008404, intron 1 of 15)	9573.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88144111-3	chr3	88143582	88144582	+	762.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	1710.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164806316-2	chr2	164805816	164806816	+	762.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_178375, intron 1 of 1)	intron (NM_178375, intron 1 of 1)	1202.0	NM_178375	67538.0	Mm.33184	NM_178375	ENSMUSG00000045822	Zswim3	4921517A06Rik|C86566	zinc finger SWIM-type containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152159344-3	chr4	152158836	152159836	+	762.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301805, intron 1 of 4)	intron (NM_001301805, intron 1 of 4)	469.0	NM_008236	15206.0	Mm.57038	NM_008236	ENSMUSG00000028940	Hes2	HES-2	hes family bHLH transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63611156-4	chr9	63610628	63611628	+	762.325012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	8482.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-9714834-4	chr15	9714326	9715326	+	762.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305042, intron 8 of 36)	intron (NM_001305042, intron 8 of 36)	34042.0	NM_177123	320277.0	Mm.127822	NM_177123	ENSMUSG00000072663	Spef2	C230086A09Rik	sperm flagellar 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87358995-4	chr11	87358520	87359520	+	762.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177167)	promoter-TSS (NM_177167)	-26.0	NM_177167	320472.0	Mm.341988	NM_177167	ENSMUSG00000046442	Ppm1e	AW049266|B930008A12Rik|POPX1|PP2CH|mKIAA1072	protein phosphatase 1E (PP2C domain containing)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-129823490-4	chr3	129822999	129823999	+	762.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009102)	promoter-TSS (NM_009102)	-994.0	NM_009102	20132.0	Mm.278758	NM_009102	ENSMUSG00000028012	Rrh	-	retinal pigment epithelium derived rhodopsin homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102506779-4	chr4	102506282	102507282	+	762.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-63278.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	2.5	2.0	2.5	0.0	7.0	0.0
Merged-chr6-67102227-3	chr6	67101720	67102720	+	762.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64813.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-143942814-3	chr2	143942321	143943321	+	762.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019771, exon 4 of 4)	3' UTR (NM_019771, exon 4 of 4)	27490.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119336666-3	chr2	119336167	119337167	+	762.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10470.0	NR_030683	100043609.0	Mm.185068	NR_030683	ENSMUSG00000074912	Gm14207	Dll4	predicted gene 14207	ncRNA	32.0	27.0	15.5	26.5	33.0	28.0
Merged-chr14-22073601-4	chr14	22073097	22074097	+	762.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 2 of 6)	intron (NM_028275, intron 2 of 6)	53885.0	NM_028275	76633.0	Mm.489898	NM_028275	ENSMUSG00000063458	Lrmda	1700112E06Rik|2700009F18Rik	leucine rich melanocyte differentiation associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118082941-4	chr9	118082463	118083463	+	762.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026442, intron 2 of 3)	intron (NM_026442, intron 2 of 3)	42441.0	NM_013727	27215.0	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	0.0	0.0	0.5	0.0	6.5	1.5
Merged-chr15-67042422-2	chr15	67041905	67042905	+	762.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72764.0	NM_008681	17988.0	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	0.0	4.0	2.0	6.5	0.0	2.0
Merged-chr6-129331883-4	chr6	129331423	129332423	+	762.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199034)	promoter-TSS (NM_199034)	-142.0	NM_199034	381816.0	Mm.46114	NM_199034	ENSMUSG00000047720	4922502D21Rik	Clec2m|Gm1074|SPATA78	RIKEN cDNA 4922502D21 gene	protein-coding	0.5	0.0	0.0	0.0	0.0	2.0
Merged-chr17-33900978-3	chr17	33900547	33901547	+	762.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-4088.0	NR_040470	474160.0	Mm.206186	NR_040470	ENSMUSG00000092349	Platr17	-	pluripotency associated transcript 17	ncRNA	3.5	12.5	17.0	15.5	4.0	12.0
Merged-chr7-31053183-1	chr7	31052683	31053683	+	762.25	f0_balb.idr	intron (NM_194321, intron 4 of 7)	G-rich|Low_complexity|Low_complexity	1670.0	NM_052991	56188.0	Mm.1491	NM_019503	ENSMUSG00000036570	Fxyd1	0610012C17Rik|1110006M24Rik|Plm|Pml	FXYD domain-containing ion transport regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr2-131905895-2	chr2	131905395	131906395	+	762.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4033.0	NM_011170	19122.0	Mm.648	NM_011170	ENSMUSG00000079037	Prnp	AA960666|AI325101|CD230|PrP|PrP<C>|PrPC|PrPSc|Prn-i|Prn-p|Sinc|prP27-30|prP33-35C	prion protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-26211964-2	chr11	26211473	26212473	+	762.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-1397.0	NR_027973	70626.0	Mm.379180	NM_027486		5730522E02Rik	-	RIKEN cDNA 5730522E02 gene	ncRNA	2.5	0.0	0.5	3.0	0.5	8.0
Merged-chr1-65154990-3	chr1	65154503	65155503	+	762.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24139.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111497276-3	chr9	111496771	111497771	+	762.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58190.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr16-96358109-3	chr16	96357588	96358588	+	762.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3669.0	NM_001177887	72058.0	Mm.119714	NM_028078	ENSMUSG00000000159	Igsf5	2010003D20Rik|JCAM|Jam4	immunoglobulin superfamily, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-73293730-3	chr5	73293170	73294170	+	762.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023429, intron 1 of 8)	intron (NM_023429, intron 1 of 8)	876.0	NM_001159888	68095.0	Mm.247039	NM_023429	ENSMUSG00000029152	Ociad1	6030432N09Rik|AI481327|AW557942|Asrij|B230209J16Rik|BB021357|Emi2|Imi2|OCIA|TPA018	OCIA domain containing 1	protein-coding	10.0	41.0	25.5	3.0	17.5	11.5
Merged-chr1-106101257-3	chr1	106100745	106101745	+	762.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70279.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97517988-3	chr6	97517440	97518440	+	762.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-30120.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	2.0	12.0	11.0	4.0	3.0	0.0
Merged-chr13-73417938-3	chr13	73417452	73418452	+	762.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49431.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68135491-2	chr10	68134948	68135948	+	762.216675	f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 4 of 9)	intron (NM_023598, intron 4 of 9)	143278.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	41.0	50.5	54.0	75.0	78.0	73.0
Merged-chr10-19171243-4	chr10	19170753	19171753	+	762.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038022, intron 1 of 1)	intron (NR_038022, intron 1 of 1)	4015.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66904599-3	chr15	66904152	66905152	+	762.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018865, intron 1 of 4)	intron (NM_018865, intron 1 of 4)	13259.0	NM_018865	22402.0	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-15012488-3	chr3	15012000	15013000	+	762.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41299.0	NR_040550	77127.0	Mm.195792	NR_040549	ENSMUSG00000098008	A930001A20Rik	-	RIKEN cDNA A930001A20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-123356352-3	chr7	123355873	123356873	+	762.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	13542.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-59076334-4	chr19	59075834	59076834	+	762.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175172)	promoter-TSS (NM_175172)	-265.0	NM_001114312	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-85802013-3	chr4	85801496	85802496	+	762.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-251919.0	NM_029967	77739.0	Mm.331690	NM_029967	ENSMUSG00000066113	Adamtsl1	5930437A14Rik|6720426B09Rik|ADAMTSL-1	ADAMTS-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36797351-2	chr15	36796851	36797851	+	762.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253806)	promoter-TSS (NM_001253806)	-422.0	NM_001253806	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65741387-2	chr17	65740887	65741887	+	762.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	RMER6A|LTR|ERVK	31365.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	5.0	14.0	8.0	5.0	9.5	7.5
Merged-chr3-122943770-2	chr3	122943270	122944270	+	762.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133857, intron 14 of 15)	intron (NM_133857, intron 14 of 15)	19373.0	NM_024461	67704.0	Mm.24219	NM_024461	ENSMUSG00000054091	1810037I17Rik	5730414I01Rik|Aln	RIKEN cDNA 1810037I17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145281976-7	chr7	145281304	145282304	+	762.142883	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132643, intron 1 of 22)	intron (NR_132643, intron 1 of 22)	2207.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	0.0	4.0	5.5	10.0	3.5	5.5
Merged-chr10-84488509-3	chr10	84488004	84489004	+	762.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_108059, exon 1 of 4)	non-coding (NR_108059, exon 1 of 4)	211.0	NR_108059	75804.0		NR_108059	ENSMUSG00000020033	4930463O16Rik	-	RIKEN cDNA 4930463O16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55841722-3	chr19	55841156	55842156	+	762.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-53665.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84584439-4	chr18	84583929	84584929	+	762.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 1 of 8)	intron (NM_001033341, intron 1 of 8)	5075.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-93467574-1	chr4	93467074	93468074	+	762.0	f0_balb.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-132063.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	0.0	4.5	6.5	0.0	7.0	5.0
Merged-chr9-89198521-4	chr9	89198035	89199035	+	762.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007534)	promoter-TSS (NM_007534)	-738.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	0.0	2.5	0.0	6.0	4.5	1.5
Merged-chr11-103103675-2	chr11	103103199	103104199	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025988, intron 3 of 10)	intron (NM_025988, intron 3 of 10)	2011.0	NM_025988	67131.0	Mm.390367	NM_025988	ENSMUSG00000056938	Acbd4	2010009P05Rik|2010015A21Rik|AI849317	acyl-Coenzyme A binding domain containing 4	protein-coding	0.5	0.0	2.0	0.5	0.0	2.0
Merged-chr16-8832414-2	chr16	8831914	8832914	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081400, intron 2 of 3)	B1_Mus2|SINE|Alu	2314.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113632114-2	chr5	113631614	113632614	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	11489.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-26564633-3	chr10	26564129	26565129	+	762.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110022.0	NR_033633	667572.0	Mm.482728	NR_033633	ENSMUSG00000098179	Gm8709	EG667572	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	3.5	11.0	8.0	0.0	0.0	7.5
Merged-chr16-77087199-2	chr16	77086699	77087699	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 17 of 23)	RMER13A2|LTR|ERVK	73130.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-57513274-2	chr8	57512774	57513774	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008252, intron 3 of 4)	intron (NM_008252, intron 3 of 4)	1431.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29806516-3	chr11	29805998	29806998	+	762.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 17 of 41)	Lx8|LINE|L1	19170.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	2.0	1.5	4.5	1.0	3.0	1.5
Merged-chr12-105069144-2	chr12	105068644	105069644	+	762.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36526.0	NM_028419	73046.0	Mm.29128	NM_028419	ENSMUSG00000021102	Glrx5	-	glutaredoxin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75669541-2	chr10	75669041	75670041	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172549, intron 29 of 36)	intron (NM_172549, intron 29 of 36)	-25533.0	NM_027890	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76265952-2	chr16	76265452	76266452	+	762.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	107097.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-19856077-1	chr15	19855577	19856577	+	762.0	f0_c57.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	670704.0	NR_155419	102639102.0	Mm.463245	NR_155419	ENSMUSG00000115803	Gm35496	-	predicted gene, 35496	ncRNA	1.0	13.0	6.5	0.0	5.5	2.5
Merged-chr2-129367775-1	chr2	129367275	129368275	+	762.0	f1_balb.idr	intron (NM_008361, intron 4 of 6)	intron (NM_008361, intron 4 of 6)	-2127.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	26.0	21.0	29.5	27.0	72.5	37.0
Merged-chr15-78808263-1	chr15	78807763	78808763	+	762.0	f1_c57bl6.idr	Intergenic	Intergenic	-5221.0	NM_130859	105844.0	Mm.17629	NM_130859	ENSMUSG00000033170	Card10	AI449026|Bimp1|Carma3	caspase recruitment domain family, member 10	protein-coding	3.0	0.0	0.0	1.0	2.0	0.0
Merged-chr12-7010997-1	chr12	7010497	7011497	+	762.0	f1_balb.idr	Intergenic	Lx|LINE|L1	369333.0	NR_045045	73575.0	Mm.179463	NR_045045	ENSMUSG00000102096	1700101O22Rik	-	RIKEN cDNA 1700101O22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134534191-2	chr4	134533691	134534691	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029759, intron 1 of 6)	intron (NM_029759, intron 1 of 6)	905.0	NM_001355188	76824.0	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	16.5	24.5	13.5	10.0	20.5	13.5
Merged-chr3-116333390-3	chr3	116332868	116333868	+	762.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001173553, intron 5 of 13)	intron (NM_001173553, intron 5 of 13)	20876.0	NM_001355646	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126847997-2	chr7	126847497	126848497	+	762.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010069, exon 1 of 11)	5' UTR (NM_010069, exon 1 of 11)	444.0	NM_010069	13446.0	Mm.266301	NM_010069	ENSMUSG00000052301	Doc2a	-	double C2, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100790346-2	chr12	100789846	100790846	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361017, intron 3 of 14)	intron (NM_001361017, intron 3 of 14)	11289.0	NM_145448	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21918860-4	chr10	21918369	21919369	+	762.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 1 of 13)	intron (NM_001161845, intron 1 of 13)	36685.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.0	3.0	2.5	3.0	2.0	5.5
Merged-chr12-35896351-1	chr12	35895851	35896851	+	762.0	f1_c57bl6.idr	Intergenic	Intergenic	-29270.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	12.0	11.0	10.5	15.5	11.5	3.0
Merged-chr15-37963195-2	chr15	37962695	37963695	+	762.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-2140.0	NM_199476	382985.0	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132010350-2	chr1	132009850	132010850	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007923, intron 1 of 4)	B2_Mm1a|SINE|B2	2745.0	NM_007923	13714.0	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-59012177-2	chr3	59011677	59012677	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 1 of 43)	intron (NM_177855, intron 1 of 43)	5199.0	NM_177855	329650.0	Mm.240059	NM_177855	ENSMUSG00000056476	Med12l	A130035F20|A630079M02|AU044581|TRALPUSH	mediator complex subunit 12-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24193121-2	chr17	24192625	24193625	+	762.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_001163851, intron 1 of 8)	intron (NM_001163851, intron 1 of 8)	6832.0	NM_001163852	224617.0	Mm.301585	NM_173186	ENSMUSG00000036473	Tbc1d24	9630033P11|C530046L02Rik|mKIAA1171	TBC1 domain family, member 24	protein-coding	36.0	80.5	54.5	6.5	3.5	10.0
Merged-chr6-83152031-1	chr6	83151531	83152531	+	762.0	f1_c57bl6.idr	TTS (NM_023790)	TTS (NM_023790)	4348.0	NM_001362120	75659.0	Mm.130665	NM_023790	ENSMUSG00000030032	Wdr54	1700030E05Rik	WD repeat domain 54	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr9-98956255-2	chr9	98955755	98956755	+	762.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003248)	promoter-TSS (NR_003248)	648.0	NM_012020	26927.0	Mm.151239	NM_012020	ENSMUSG00000050397	Foxl2	AU045128|BPES|PINTO|Pfrk	forkhead box L2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6413026-2	chr15	6412526	6413526	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	26278.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25583089-2	chr2	25582589	25583589	+	762.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001024616)	TTS (NM_001024616)	-2990.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124066741-1	chr8	124066241	124067241	+	762.0	f0_balb.idr	Intergenic	Intergenic	43268.0	NM_001029876	382038.0	Mm.334891	NM_001029876	ENSMUSG00000031976	Urb2	C77575|mKIAA0133	URB2 ribosome biogenesis 2 homolog (S. cerevisiae)	protein-coding	7.5	6.0	0.5	17.5	0.5	4.0
Merged-chr3-65356301-1	chr3	65355801	65356801	+	762.0	f1_balb.idr	exon (NM_001289450, exon 10 of 15)	exon (NM_001289450, exon 10 of 15)	-6872.0	NR_040390	319798.0	Mm.445698	NR_040390		A730090N16Rik	-	RIKEN cDNA A730090N16 gene	ncRNA	2.0	3.5	5.5	5.0	13.0	5.5
Merged-chr5-135490550-2	chr5	135490050	135491050	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	B4|SINE|B4	54572.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25240509-1	chr17	25240009	25241009	+	762.0	f1_balb.idr	promoter-TSS (NM_001346737)	promoter-TSS (NM_001346737)	339.0	NM_026676	68327.0	Mm.180687	NM_026676	ENSMUSG00000015126	Tsr3	0610007P22Rik|1110014B11Rik|AL022759	TSR3 20S rRNA accumulation	protein-coding	38.0	13.5	44.5	7.0	36.5	30.0
Merged-chr8-126660090-1	chr8	126659590	126660590	+	762.0	f1_c57bl6.idr	Intergenic	Intergenic	-66654.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	3.5	18.0	1.0	1.5	4.5	3.5
Merged-chr10-59880438-2	chr10	59879938	59880938	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019965, intron 1 of 8)	intron (NM_019965, intron 1 of 8)	847.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-106813920-3	chr7	106813378	106814378	+	762.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360747)	promoter-TSS (NM_001360747)	-251.0	NM_028910	66786.0	Mm.159186	NM_028910	ENSMUSG00000036744	Olfr701	4932441H21Rik|4933433E02Rik|MOR283-1	olfactory receptor 701	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51920416-2	chr11	51919916	51920916	+	762.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47215.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-135658794-2	chr2	135658294	135659294	+	762.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013829)	promoter-TSS (NM_013829)	-753.0	NM_001355155	18798.0	Mm.38009	NM_013829	ENSMUSG00000039943	Plcb4	A930039J07Rik|AI854601|C230058B11Rik	phospholipase C, beta 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50841716-1	chr14	50841216	50842216	+	762.0	f1_c57bl6.idr	intron (NM_009351, intron 29 of 54)	intron (NM_009351, intron 29 of 54)	28838.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	21.0	50.5	50.0	6.0	37.0	21.5
Merged-chr3-107680887-3	chr3	107680375	107681375	+	762.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145542, intron 1 of 16)	intron (NM_145542, intron 1 of 16)	15181.0	NM_001357113	229709.0	Mm.220328	NM_145542	ENSMUSG00000027893	Ahcyl1	1110034F20Rik|AA409031|AA414901|Ahcy-rs3|DCAL|Irbit	S-adenosylhomocysteine hydrolase-like 1	protein-coding	2.0	13.0	9.0	5.5	15.0	10.5
Merged-chr6-58831028-1	chr6	58830528	58831528	+	762.0	f0_balb.idr	promoter-TSS (NM_001361967)	promoter-TSS (NM_001361967)	-437.0	NM_001361967	73998.0	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143059108-2	chr7	143058608	143059608	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133655, intron 1 of 7)	intron (NM_133655, intron 1 of 7)	-5422.0	NR_110354	97423.0	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	25.0	33.5	27.0	30.0	41.5	21.0
Merged-chr8-72354540-1	chr8	72354040	72355040	+	762.0	f1_c57bl6.idr	intron (NM_007944, intron 22 of 23)	intron (NM_007944, intron 22 of 23)	35478.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	0.0	0.5	0.0	0.5	0.5	0.0
Merged-chr2-83701343-2	chr2	83700843	83701843	+	762.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21B|LTR|ERVL	-23054.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	1.0	2.5	0.0	0.0	2.5	4.5
Merged-chr6-114968608-2	chr6	114968108	114969108	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 1 of 5)	intron (NM_001356371, intron 1 of 5)	595.0	NM_001356371	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127786445-2	chr3	127785983	127786983	+	762.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1-int|LTR|ERVL-MaLR	-3389.0	NM_145133	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	22.0	32.0	12.5	22.5	40.0	31.5
Merged-chr7-128110487-2	chr7	128109987	128110987	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008401, intron 16 of 29)	Lx8b|LINE|L1	-19081.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117989177-2	chr11	117988677	117989677	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151726, intron 1 of 9)	B3A|SINE|B2	2320.0	NR_151726	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-42860491-4	chr6	42859983	42860983	+	762.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22600.0	NM_147064	259067.0	Mm.451673	NM_147064	ENSMUSG00000049168	Olfr449	GA_x6K02T2P3E9-4722003-4721068|MOR103-1	olfactory receptor 449	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5435222-2	chr2	5434722	5435722	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030601, intron 1 of 1)	RMER21A|LTR|ERV1	55832.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120817138-3	chr9	120816687	120817687	+	762.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98063.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	1.5	0.0	0.0	0.0	0.0	4.0
Merged-chr7-27544467-1	chr7	27543967	27544967	+	762.0	f1_balb.idr	intron (NM_001317355, intron 2 of 13)	B1_Mus2|SINE|Alu	8751.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	0.5	5.5	2.5	0.5	3.0	2.5
Merged-chr14-70765966-3	chr14	70765432	70766432	+	761.977783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023045, intron 1 of 27)	CpG	696.0	NM_023045	65246.0	Mm.152987	NM_023045	ENSMUSG00000022100	Xpo7	4930506C02Rik|BB164534|Ranbp16|exp7	exportin 7	protein-coding	0.0	8.5	4.0	1.0	5.5	5.5
Merged-chr11-3456513-4	chr11	3456002	3457002	+	761.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028317, intron 1 of 3)	B3|SINE|B2	-3546.0	NM_001290473	193670.0	Mm.136973	NM_145355	ENSMUSG00000020448	Rnf185	-	ring finger protein 185	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-42124018-2	chr9	42123518	42124518	+	761.916626	f1_balb.idr|f1_c57bl6.idr	exon (NM_011436, exon 1 of 48)	exon (NM_011436, exon 1 of 48)	279.0	NM_011436	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0.0	0.5	1.5	0.0	0.0	0.0
Merged-chr13-24862744-3	chr13	24862266	24863266	+	761.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081051, intron 5 of 20)	intron (NM_001081051, intron 5 of 20)	17635.0	NR_131787	210108.0	Mm.261514	NM_001081051	ENSMUSG00000006711	D130043K22Rik	4930451E12Rik|Kiaa0319	RIKEN cDNA D130043K22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148406491-3	chr2	148406009	148407009	+	761.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009378, exon 1 of 1)	exon (NM_009378, exon 1 of 1)	1679.0	NM_009378	21824.0	Mm.24096	NM_009378	ENSMUSG00000074743	Thbd	AI385582|CD141|TM	thrombomodulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-128723898-3	chr1	128723392	128724392	+	761.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-131593.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	51.5	136.0	74.5	44.5	62.0	63.5
Merged-chr12-84759159-2	chr12	84758659	84759659	+	761.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 3 of 3)	B3|SINE|B2	13953.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79893034-4	chr15	79892572	79893572	+	761.875	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030675)	promoter-TSS (NR_030675)	66.0	NR_030675	109361.0	Mm.394656	NR_030675		D730005E14Rik	-	RIKEN cDNA D730005E14 gene	ncRNA	61.0	193.5	86.0	12.5	60.5	32.0
Merged-chr8-84971789-2	chr8	84971289	84972289	+	761.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317385, intron 5 of 5)	intron (NM_001317385, intron 5 of 5)	2167.0	NM_011563	21672.0	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	0.0	0.0	0.5	0.5	6.5	5.0
Merged-chr6-129433520-2	chr6	129433021	129434021	+	761.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175526, intron 3 of 5)	intron (NM_175526, intron 3 of 5)	18479.0	NM_001347475	243653.0	Mm.131289	NM_175526	ENSMUSG00000033082	Clec1a	5930406N14Rik	C-type lectin domain family 1, member a	protein-coding	11.5	11.5	1.0	6.0	5.5	10.0
Merged-chr12-51680593-2	chr12	51680093	51681093	+	761.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172098, intron 1 of 15)	B1F1|SINE|Alu	-10373.0	NM_001329699	11782.0	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130448661-2	chr2	130448161	130449161	+	761.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1617.0	NM_008980	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	12.0	10.0	11.5	0.0	12.0	11.0
Merged-chr2-62458412-2	chr2	62457912	62458912	+	761.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25241.0	NM_008100	14526.0	Mm.45494	NM_008100	ENSMUSG00000000394	Gcg	GLP-1|Glu|PPG	glucagon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10849219-2	chr16	10848719	10849719	+	761.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14160.0	NM_001162932	223970.0	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94156040-3	chr13	94155496	94156496	+	761.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	98200.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139949981-4	chr7	139949488	139950488	+	761.825012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6132.0	NM_009482	22286.0	Mm.10205	NM_009482	ENSMUSG00000047751	Utf1	AI505934	undifferentiated embryonic cell transcription factor 1	protein-coding	6.0	20.0	4.0	18.0	25.0	5.0
Merged-chr2-130577751-4	chr2	130577093	130578093	+	761.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011025)	TTS (NM_011025)	1424.0	NM_011025	18429.0	Mm.16745	NM_011025	ENSMUSG00000027301	Oxt	OT|Oxy	oxytocin	protein-coding	7.0	5.0	3.0	3.0	5.5	5.5
Merged-chr3-97338970-4	chr3	97338449	97339449	+	761.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72230.0	NM_146275	258272.0	Mm.377406	NM_146275	ENSMUSG00000051392	Olfr1402	MOR217-1	olfactory receptor 1402	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84251422-4	chr1	84250903	84251903	+	761.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003948, intron 1 of 2)	Lx8|LINE|L1	-32442.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102514350-3	chr7	102513748	102514748	+	761.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19475.0	NM_146840	258837.0	Mm.377714	NM_146840	ENSMUSG00000044824	Olfr545	MOR42-1|S50	olfactory receptor 545	protein-coding	7.0	13.0	12.0	2.0	7.0	6.0
Merged-chr16-24619753-2	chr16	24619253	24620253	+	761.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	90439.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13874337-2	chr8	13873837	13874837	+	761.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_181854, intron 1 of 1)	RLTR13C2|LTR|ERVK	4696.0	NM_181854	101994.0	Mm.289346	NM_181854	ENSMUSG00000047710	Champ1	AA675043|AI116001|D8Ertd457e|D8Ertd569e|Zfp828|Znf828|mKIAA1802	chromosome alignment maintaining phosphoprotein 1	protein-coding	1.0	8.0	2.0	4.5	11.5	5.5
Merged-chr11-49082188-3	chr11	49081699	49082699	+	761.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271677, intron 1 of 2)	intron (NM_001271677, intron 1 of 2)	-4818.0	NM_001271676	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-108040985-4	chr11	108040472	108041472	+	761.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 5 of 16)	intron (NM_011101, intron 5 of 16)	44124.0	NR_106082	102465705.0		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127646961-2	chr10	127646461	127647461	+	761.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_009284, exon 2 of 22)	exon (NM_009284, exon 2 of 22)	3975.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	12.5	1.0	2.0	5.5	0.0	3.0
Merged-chr11-70675265-1	chr11	70674765	70675765	+	761.75	f0_balb.idr	intron (NM_001190379, intron 12 of 20)	intron (NM_001190379, intron 12 of 20)	-5849.0	NM_001167669	216873.0	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27526677-4	chr7	27526179	27527179	+	761.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033315, intron 1 of 3)	intron (NM_001033315, intron 1 of 3)	3418.0	NM_001033315	233020.0	Mm.429716	NM_001033315	ENSMUSG00000040424	Hipk4	Gm162	homeodomain interacting protein kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88518317-4	chr5	88517814	88518814	+	761.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	9583.0	NM_152839	16069.0	Mm.1192	NM_152839	ENSMUSG00000067149	Jchain	9530090F24Rik|AI323815|Igj|Jch	immunoglobulin joining chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-50789437-5	chr2	50788991	50789991	+	761.700012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120193.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-129530584-2	chr7	129530084	129531084	+	761.700012	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-61279.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-30605899-3	chr15	30605412	30606412	+	761.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-433214.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	22.5	8.0	8.5	23.0	5.0	9.5
Merged-chr13-5800040-3	chr13	5799536	5800536	+	761.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58056.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-3251157-3	chr15	3250667	3251667	+	761.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19600.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-131246822-3	chr3	131246315	131247315	+	761.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008212, intron 3 of 7)	intron (NM_008212, intron 3 of 7)	25286.0	NM_008212	15107.0	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-39199316-3	chr15	39198809	39199809	+	761.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256383, intron 1 of 25)	intron (NM_001256383, intron 1 of 25)	1023.0	NM_053271	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34036769-4	chr10	34036225	34037225	+	761.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162937)	promoter-TSS (NM_001162937)	-872.0	NM_001162937	692132.0	Mm.383415	NM_001162937	ENSMUSG00000071340	Trappc3l	Bet3l	trafficking protein particle complex 3 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49079066-3	chr7	49078544	49079544	+	761.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	83114.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166652293-2	chr2	166651793	166652793	+	761.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	MIRb|SINE|MIR	61539.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167070770-2	chr2	167070270	167071270	+	761.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5477.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115430131-2	chr5	115429631	115430631	+	761.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008629, intron 2 of 14)	CpG-11404	446.0	NM_008629	17690.0	Mm.5077	NM_008629	ENSMUSG00000054256	Msi1	Msi1h|Musahi1|m-Msi-1	musashi RNA-binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103328686-2	chr11	103328186	103329186	+	761.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16016.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61689022-2	chr14	61688522	61689522	+	761.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6649.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-47226737-2	chr13	47226239	47227239	+	761.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 3 of 7)	B3A|SINE|B2	32736.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	8.0	11.0	18.0	22.0	32.5	17.5
Merged-chr4-3728876-4	chr4	3728376	3729376	+	761.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	13912.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	25.5	58.0	48.5	3.0	19.0	12.5
Merged-chr4-40239072-4	chr4	40238466	40239466	+	761.645813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172689, intron 1 of 17)	intron (NM_172689, intron 1 of 17)	859.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102444951-2	chr12	102444428	102445428	+	761.633301	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-5115.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	47.0	144.5	85.0	47.0	138.5	87.0
Merged-chr8-109706996-4	chr8	109706430	109707430	+	761.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286393, intron 2 of 7)	intron (NM_001286393, intron 2 of 7)	911.0	NM_029468	75871.0	Mm.180410	NM_029468	ENSMUSG00000031728	Zfp821	4930566A11Rik|Znf821	zinc finger protein 821	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-55153156-3	chr3	55152661	55153661	+	761.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177203, intron 4 of 7)	intron (NM_177203, intron 4 of 7)	10920.0	NR_110781	320604.0	Mm.213909	NM_177203	ENSMUSG00000048655	Ccdc169	A730037C10Rik	coiled-coil domain containing 169	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139249456-4	chr4	139248957	139249957	+	761.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 2 of 9)	intron (NM_001037761, intron 2 of 9)	55346.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	26.5	103.0	84.0	53.0	76.0	84.0
Merged-chr3-142708069-3	chr3	142707508	142708508	+	761.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173763, intron 2 of 13)	RLTR45|LTR|ERVK	6960.0	NM_001293560	229905.0	Mm.289643	NM_173763	ENSMUSG00000040213	Kyat3	Ccbl2|KATIII|Kat3	kynurenine aminotransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13090847-6	chr10	13090243	13091243	+	761.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131912)	promoter-TSS (NR_131912)	-45.0	NM_009538	22634.0	Mm.287857	NM_009538	ENSMUSG00000019817	Plagl1	Lot1|Zac1	pleiomorphic adenoma gene-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35728756-3	chr2	35728245	35729245	+	761.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001114124, exon 16 of 16)	3' UTR (NM_001114124, exon 16 of 16)	32013.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127300052-3	chr3	127299562	127300562	+	761.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	108996.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	11.0	39.0	45.0	11.5	6.0	12.0
Merged-chr13-95843001-3	chr13	95842458	95843458	+	761.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	48964.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	19.0	45.5	41.5	7.0	4.5	21.0
Merged-chr14-102898627-4	chr14	102898127	102899127	+	761.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84005.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16107890-3	chr19	16107398	16108398	+	761.527771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24933.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	0.0	7.0	0.0	3.5	4.0	0.0
Merged-chr1-193060331-4	chr1	193059853	193060853	+	761.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-24578.0	NM_181546	329324.0	Mm.76710	NM_181546	ENSMUSG00000016200	Syt14	B230320I09Rik|sytXIV	synaptotagmin XIV	protein-coding	1.0	15.0	1.0	3.5	0.0	0.0
Merged-chr10-81133102-2	chr10	81132602	81133602	+	761.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3169.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57421542-2	chr17	57421042	57422042	+	761.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 12 of 22)	Lx5|LINE|L1	62856.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91927404-2	chr16	91926904	91927904	+	761.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138597, intron 3 of 6)	intron (NM_138597, intron 3 of 6)	4226.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100468263-2	chr7	100467763	100468763	+	761.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 32 of 32)	intron (NM_001017985, intron 32 of 32)	-4728.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-36847816-2	chr11	36847316	36848316	+	761.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011856, intron 2 of 28)	intron (NM_011856, intron 2 of 28)	96425.0	NM_001290702	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.0	0.5	0.0	3.0	2.0	0.0
Merged-chr18-33463540-2	chr18	33463040	33464040	+	761.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045415)	promoter-TSS (NR_045415)	94.0	NM_001267717	27528.0	Mm.407415	NM_053078	ENSMUSG00000042834	Nrep	AI325076|D0H4S114|Harp|P311|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-129779554-2	chr10	129779054	129780054	+	761.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	3683.0	NM_146324	258321.0	Mm.391461	NM_146324	ENSMUSG00000050251	Olfr809	MOR108-4	olfactory receptor 809	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75614348-2	chr2	75613848	75614848	+	761.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-44911.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154963474-2	chr4	154962990	154963990	+	761.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305804)	promoter-TSS (NM_001305804)	-633.0	NM_001305804	269614.0	Mm.30042	NM_172990	ENSMUSG00000029056	Pank4	D030031I12Rik|R75150	pantothenate kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr11-115068762-2	chr11	115068262	115069262	+	761.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-6723.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34844715-2	chr17	34844152	34845152	+	761.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105936)	TTS (NR_105936)	515.0	NR_105936	102465586.0		NR_105936	ENSMUSG00000098460	Mir6970	Gm27589|mmu-mir-6970	microRNA 6970	ncRNA	0.0	0.0	3.5	0.0	0.0	0.5
Merged-chr3-60474009-2	chr3	60473509	60474509	+	761.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253713, intron 2 of 9)	intron (NM_001253713, intron 2 of 9)	1179.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105252864-3	chr4	105252361	105253361	+	761.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95514.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	18.0	15.5	13.0	5.5	3.5	4.5
Merged-chr13-21981746-2	chr13	21981246	21982246	+	761.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001162928, exon 1 of 1)	exon (NM_001162928, exon 1 of 1)	552.0	NM_001162929	195236.0	Mm.204664	NM_001162928	ENSMUSG00000016982	Pom121l2	Gm24	POM121 membrane glycoprotein-like 2 (rat)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3415199-2	chr7	3414699	3415699	+	761.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_128566)	TTS (NR_128566)	133.0	NR_128566	104795667.0		NR_128566	ENSMUSG00000094210	Gm23450	Mir935|mmu-mir-935	predicted gene, 23450	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139230367-1	chr7	139229867	139230867	+	761.5	f1_balb.idr	intron (NM_027164, intron 8 of 10)	intron (NM_027164, intron 8 of 10)	-17060.0	NM_001162540	57740.0	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	5.5	0.0	6.0	0.0	0.0	1.0
Merged-chr19-8841682-2	chr19	8841182	8842182	+	761.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008144, intron 2 of 10)	PB1D7|SINE|Alu	1179.0	NM_001290823	14705.0	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78480049-2	chr10	78479549	78480549	+	761.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-15101.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141541302-2	chr7	141540802	141541802	+	761.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1445.0	NM_001142681	68038.0	Mm.245355	NM_026522	ENSMUSG00000025512	Chid1	3110023E09Rik|AI841869	chitinase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132482470-2	chr4	132481970	132482970	+	761.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-18549.0	NM_026039	67219.0	Mm.45929	NM_026039	ENSMUSG00000066042	Med18	2810046C01Rik	mediator complex subunit 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127510735-2	chr10	127510235	127511235	+	761.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4204.0	NM_001098789	407790.0	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr17-35471044-1	chr17	35470544	35471544	+	761.5	f0_balb.idr	exon (NM_010391, exon 3 of 7)	exon (NM_010391, exon 3 of 7)	955.0	NM_010391	15007.0	Mm.88795	NM_010391	ENSMUSG00000067235	H2-Q10	H-2Q10|Q10|Qa10	histocompatibility 2, Q region locus 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110734275-2	chr9	110733775	110734775	+	761.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083936, intron 1 of 13)	intron (NM_001083936, intron 1 of 13)	8335.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51689841-2	chr11	51689341	51690341	+	761.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1207.0	NM_025319	66050.0	Mm.35693	NM_025319	ENSMUSG00000007777	0610009B22Rik	-	RIKEN cDNA 0610009B22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86164668-2	chr17	86164168	86165168	+	761.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3117.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41345905-2	chr13	41345405	41346405	+	761.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 2 of 7)	intron (NM_001111324, intron 2 of 7)	13096.0	NM_017464	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45734551-2	chr17	45734051	45735051	+	761.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028164)	promoter-TSS (NM_028164)	45.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	12.0	0.5	0.0	2.0	4.0	0.5
Merged-chr10-80536246-2	chr10	80535746	80536746	+	761.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026094, intron 3 of 27)	intron (NM_026094, intron 3 of 27)	2878.0	NM_026094	67331.0	Mm.52511	NM_026094	ENSMUSG00000003341	Atp8b3	1700042F02Rik|1700056N23Rik|ATPIK|SAPLT	ATPase, class I, type 8B, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64226963-2	chr5	64226463	64227463	+	761.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	(TC)n|Simple_repeat|Simple_repeat	-3394.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67258699-2	chr7	67258199	67259199	+	761.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 7 of 11)	RSINE1|SINE|B4	36083.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65542930-2	chr9	65542430	65543430	+	761.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	37157.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-46173117-3	chr9	46172633	46173633	+	761.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 4 of 24)	B4A|SINE|B4	-55497.0	NM_009692	11806.0	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23844298-2	chr18	23843798	23844798	+	761.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 3 of 7)	B4A|SINE|B4	40328.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91928802-2	chr2	91928305	91929305	+	761.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291483)	TTS (NM_001291483)	2897.0	NM_001291481	17242.0	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	0.0	3.0	3.5	0.0	0.0	1.0
Merged-chr19-60467852-2	chr19	60467324	60468324	+	761.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_201615, exon 1 of 1)	exon (NM_201615, exon 1 of 1)	480.0	NM_201615	226278.0	Mm.377241	NM_201615	ENSMUSG00000045052	Prlhr	Gm339|Gpr10|Gr3|Prrpr	prolactin releasing hormone receptor	protein-coding	1.0	5.0	1.5	10.5	0.0	0.0
Merged-chr5-99344965-2	chr5	99344465	99345465	+	761.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	Lx|LINE|L1	-92038.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163574171-2	chr2	163573671	163574671	+	761.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27016.0	NM_008261	15378.0	Mm.202383	NM_008261	ENSMUSG00000017950	Hnf4a	HNF-4|Hnf4|Hnf4alpha|MODY1|Nr2a1|TCF-14|Tcf14	hepatic nuclear factor 4, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42637404-4	chr10	42636904	42637904	+	761.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41512.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6405423-4	chr2	6404924	6405924	+	761.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181399, intron 4 of 13)	intron (NM_181399, intron 4 of 13)	52688.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35094143-4	chr18	35093627	35094627	+	761.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24785.0	NM_009818	12385.0	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	13.0	15.5	4.5	14.0	4.5	9.0
Merged-chr2-166630925-3	chr2	166630443	166631443	+	761.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 5 of 39)	intron (NM_177782, intron 5 of 39)	66421.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-48322329-3	chr4	48321819	48322819	+	761.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010569, intron 3 of 16)	L2c|LINE|L2	42559.0	NM_001281977	16348.0	Mm.317706	NM_010569	ENSMUSG00000028344	Invs	Nphp2|inv	inversin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-56677318-3	chr16	56676808	56677808	+	761.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014399, intron 22 of 27)	intron (NM_001014399, intron 22 of 27)	40142.0	NM_001357124	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr14-70432535-3	chr14	70432033	70433033	+	761.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3439.0	NM_021308	57746.0	Mm.85253	NM_021308	ENSMUSG00000033644	Piwil2	Piwil1l|mili	piwi-like RNA-mediated gene silencing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-85141225-3	chr6	85140726	85141726	+	761.422241	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3462.0	NM_011467	20751.0	Mm.28393	NM_011467	ENSMUSG00000033735	Spr	AA409688|Gm10328	sepiapterin reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-161512126-1	chr2	161511626	161512626	+	761.400024	f0_c57.idr	Intergenic	Intergenic	-403040.0	NR_126509	71389.0	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43918324-2	chr5	43917796	43918796	+	761.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	49487.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	3.5	4.5	2.5	1.5	3.0	3.5
Merged-chr17-72898748-2	chr17	72898253	72899253	+	761.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19552.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	1.0	0.0	2.0	5.0	0.0	3.0
Merged-chr6-72353400-2	chr6	72352900	72353900	+	761.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026696)	TTS (NM_026696)	-2083.0	NM_144916	232086.0	Mm.491165	NM_144916	ENSMUSG00000055912	Tmem150a	BC014685|Tmem150	transmembrane protein 150A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-110721326-2	chr8	110720826	110721826	+	761.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198625)	promoter-TSS (NM_198625)	-150.0	NM_198625	244654.0	Mm.490385	NM_198625	ENSMUSG00000033763	Mtss1l	ABBA	metastasis suppressor 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-20840077-3	chr5	20839597	20840597	+	761.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172992, intron 2 of 17)	intron (NM_172992, intron 2 of 17)	42027.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163804432-3	chr2	163803931	163804931	+	761.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16403.0	NM_016873	22403.0	Mm.13828	NM_016873	ENSMUSG00000027656	Wisp2	Ccn5|Crgr4|Ctgfl|Rcop1	WNT1 inducible signaling pathway protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-68214057-3	chr17	68213523	68214523	+	761.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59774.0	NM_177278	320858.0	Mm.137356	NM_177278	ENSMUSG00000041565	L3mbtl4	A730037L19Rik|D930040M24Rik	L3MBTL4 histone methyl-lysine binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146844535-3	chr5	146844043	146845043	+	761.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026864)	promoter-TSS (NM_026864)	-528.0	NM_026864	68895.0	Mm.266978	NM_026864	ENSMUSG00000029641	Rasl11a	1110065D03Rik|AI852031	RAS-like, family 11, member A	protein-coding	0.5	39.0	31.0	18.5	13.0	9.0
Merged-chr1-78897375-1	chr1	78896875	78897875	+	761.333313	f0_balb.idr	intron (NR_151519, intron 3 of 3)	MLTR25A|LTR|ERVK	80464.0	NM_021342	57814.0	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding	2.5	0.0	1.0	0.0	1.0	1.0
Merged-chr10-120872590-1	chr10	120872090	120873090	+	761.333313	f0_balb.idr	intron (NM_177092, intron 1 of 6)	intron (NM_177092, intron 1 of 6)	14961.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	0.0	0.5	4.0	2.0	2.0	2.0
Merged-chr7-63755009-3	chr7	63754529	63755529	+	761.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130880, intron 13 of 13)	intron (NM_130880, intron 13 of 13)	-161828.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-23038609-3	chr19	23038108	23039108	+	761.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102618.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	14.0	18.5	12.0	0.0	0.0	0.0
Merged-chr19-18670050-3	chr19	18669576	18670576	+	761.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026120)	promoter-TSS (NM_026120)	-704.0	NM_026120	67383.0	Mm.306602	NM_026120	ENSMUSG00000024726	Carnmt1	2410127L17Rik	carnosine N-methyltransferase 1	protein-coding	26.0	35.5	35.5	26.0	39.0	50.5
Merged-chr1-155210626-4	chr1	155210155	155211155	+	761.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51952.0	NM_021433	58244.0	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-75437177-4	chr9	75436718	75437718	+	761.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4306.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	15.5	51.5	27.5	34.0	51.5	32.5
Merged-chr19-41899093-2	chr19	41898610	41899610	+	761.275024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2957.0	NM_199447	107094.0	Mm.276044	NM_199447	ENSMUSG00000035049	Rrp12	AA408556|AA536972|mKIAA0690	ribosomal RNA processing 12 homolog (S. cerevisiae)	protein-coding	4.0	6.0	1.5	4.0	7.5	1.0
Merged-chr11-59162723-2	chr11	59162277	59163277	+	761.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270791, intron 1 of 1)	intron (NM_001270791, intron 1 of 1)	968.0	NM_001270791	216792.0	Mm.266175	NM_173785	ENSMUSG00000049287	Iba57	4930543L23Rik|A230051G13Rik|C1orf69	IBA57 homolog, iron-sulfur cluster assembly	protein-coding	7.0	32.5	28.0	12.5	25.0	38.5
Merged-chr16-91599801-2	chr16	91599301	91600301	+	761.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2121.0	NM_030018	77975.0	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97585565-2	chr3	97585092	97586092	+	761.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_026539, intron 12 of 22)	intron (NM_026539, intron 12 of 22)	24598.0	NM_026539	68058.0	Mm.31761	NM_026539	ENSMUSG00000028089	Chd1l	4432404A22Rik|Alc1|Snf2p	chromodomain helicase DNA binding protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82828940-2	chr18	82828440	82829440	+	761.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26957.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr14-54528714-3	chr14	54528261	54529261	+	761.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11291.0	NM_001313907	27374.0	Mm.196585	NM_013768	ENSMUSG00000023110	Prmt5	Jbp1|Skb1	protein arginine N-methyltransferase 5	protein-coding	0.0	4.0	2.0	0.0	7.0	0.0
Merged-chr5-41550151-2	chr5	41549616	41550616	+	761.25	f0_c57.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	157575.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	1.5	12.0	4.5	4.0	6.0	6.0
Merged-chr11-69465847-4	chr11	69465302	69466302	+	761.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 39 of 85)	intron (NM_001081330, intron 39 of 85)	-52127.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136878400-2	chr4	136877853	136878853	+	761.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7824.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	22.5	19.0	12.0	2.5	6.0	3.0
Merged-chr14-62555830-2	chr14	62555294	62556294	+	761.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243857)	promoter-TSS (NM_001243857)	57.0	NM_001243857	629059.0	Mm.291864	NM_001243857	ENSMUSG00000035184	Fam124a	EG629059	family with sequence similarity 124, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr6-86456116-2	chr6	86455616	86456616	+	761.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243742, intron 6 of 9)	intron (NM_001243742, intron 6 of 9)	17470.0	NM_001243741	232196.0	Mm.404040	NM_146170	ENSMUSG00000046679	C87436	-	expressed sequence C87436	protein-coding	0.5	0.0	6.5	0.0	0.0	0.0
Merged-chr11-114984244-2	chr11	114983742	114984742	+	761.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_145437, exon 4 of 4)	exon (NM_145437, exon 4 of 4)	5644.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	1.0	15.0	10.5	11.5	53.5	35.5
Merged-chr16-84605599-3	chr16	84605113	84606113	+	761.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B2|LTR|ERVL	-74176.0	NR_040537	78023.0	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86186805-3	chr15	86186320	86187320	+	761.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145475)	promoter-TSS (NM_145475)	-679.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46813384-3	chr11	46812875	46813875	+	761.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178759, intron 1 of 8)	B3|SINE|B2	2576.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	25.5	46.5	43.0	42.0	37.0	27.5
Merged-chr13-76128929-3	chr13	76128405	76129405	+	761.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081352, intron 17 of 43)	intron (NM_001081352, intron 17 of 43)	30171.0	NM_001081352	218343.0	Mm.277964	NM_001081352	ENSMUSG00000033991	Ttc37	-	tetratricopeptide repeat domain 37	protein-coding	4.5	0.0	5.0	0.0	15.5	3.0
Merged-chr14-57378307-3	chr14	57377809	57378809	+	761.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030004, intron 2 of 7)	intron (NM_030004, intron 2 of 7)	20174.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-177259817-2	chr1	177259204	177260204	+	761.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10937.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	8.0	23.5	16.0	27.0	96.5	22.0
Merged-chr12-32459439-3	chr12	32458918	32459918	+	761.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80629.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86744880-3	chr17	86744368	86745368	+	761.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8996.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	2.0	0.0	0.0	0.0	11.0	11.5
Merged-chr2-122151364-3	chr2	122150857	122151857	+	761.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009735, intron 2 of 3)	intron (NM_009735, intron 2 of 3)	3670.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	3.5	22.5	1.5	2.5	14.0	12.5
Merged-chr5-36574342-3	chr5	36573849	36574849	+	761.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113362, intron 2 of 14)	MIRb|SINE|MIR	8048.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	6.5	19.5	29.5	6.5	19.5	29.0
Merged-chr16-3907933-3	chr16	3907401	3908401	+	761.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153801, intron 1 of 3)	intron (NR_153801, intron 1 of 3)	752.0	NR_153801	105246059.0		NR_153801		Gm41410	-	predicted gene, 41410	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114904144-2	chr11	114903644	114904644	+	761.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14103.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	3.5	7.5	6.0	3.0	4.5	3.5
Merged-chr9-21958404-2	chr9	21957904	21958904	+	761.166687	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010149)	TTS (NM_010149)	-2398.0	NR_132099	100049077.0	Mm.46647	NR_132099		Gm45914	-	predicted gene, 45914	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-103919533-3	chr8	103919040	103920040	+	761.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-182085.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32777012-2	chr2	32776512	32777512	+	761.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028273)	promoter-TSS (NR_028273)	-976.0	NR_028273	100302592.0		NR_028273	ENSMUSG00000064741	Snord14a	Rnu14|U14	small nucleolar RNA, C/D box 14A	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-31110152-2	chr7	31109652	31110652	+	761.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008281, intron 2 of 12)	intron (NM_008281, intron 2 of 12)	845.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	0.5	5.5	5.0	0.5	5.0	4.5
Merged-chr7-27334495-2	chr7	27333995	27334995	+	761.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310678)	promoter-TSS (NM_001310678)	-832.0	NM_001310678	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0.0	0.5	2.5	0.0	0.5	2.0
Merged-chr10-41505711-2	chr10	41505211	41506211	+	761.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028430, intron 6 of 7)	B3A|SINE|B2	-13789.0	NM_016898	53599.0	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70692172-2	chr9	70691672	70692672	+	761.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007399, intron 1 of 15)	intron (NM_007399, intron 1 of 15)	13190.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-104032613-4	chr5	104032128	104033128	+	761.145813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10832.0	NM_053262	114664.0	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45652067-6	chr14	45651556	45652556	+	761.138916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176845, intron 1 of 12)	intron (NM_176845, intron 1 of 12)	5997.0	NR_039593	100628600.0		NR_039593	ENSMUSG00000093167	Mir5131	mmu-mir-5131|mu-mir-5131	microRNA 5131	ncRNA	21.0	70.5	76.5	11.0	13.5	15.5
Merged-chr4-133820975-5	chr4	133820404	133821404	+	761.119995	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53827.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	6.5	13.5	19.0	15.0	29.0	21.5
Merged-chr17-44345560-3	chr17	44345058	44346058	+	761.116699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	156986.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-114581579-3	chr9	114581083	114582083	+	761.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17214.0	NM_001042503	636931.0	Mm.17857	NM_001042503	ENSMUSG00000079259	Trim71	2610206G21Rik|AL022943|Gm1127|Lin41|lin-41|mLin41|mlin-41	tripartite motif-containing 71	protein-coding	0.0	6.0	1.0	0.0	3.0	6.0
Merged-chr16-31016355-3	chr16	31015849	31016849	+	761.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 2 of 3)	intron (NM_198626, intron 2 of 3)	65083.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-115063086-4	chr4	115062631	115063631	+	761.083374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001287388, exon 3 of 5)	exon (NM_001287388, exon 3 of 5)	5320.0	NM_001287388	21349.0	Mm.239869	NM_011527	ENSMUSG00000028717	Tal1	Hpt|SCL/tal-1|Scl|bHLHa17|tal-1	T cell acute lymphocytic leukemia 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43206889-3	chr5	43206353	43207353	+	761.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 1 of 7)	intron (NR_028417, intron 1 of 7)	-26610.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-60618002-3	chr3	60617474	60618474	+	761.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 6 of 7)	MIRb|SINE|MIR	116795.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0.0	2.0	1.5	2.0	2.0	0.5
Merged-chr7-75702893-5	chr7	75702551	75703551	+	761.016663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 16 of 36)	MIRb|SINE|MIR	-145287.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	10.0	30.5	18.0	10.0	30.0	18.0
Merged-chr7-44241141-2	chr7	44240641	44241641	+	761.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5019.0	NR_029436	70004.0	Mm.158317	NR_029436	ENSMUSG00000038782	1700028J19Rik	-	RIKEN cDNA 1700028J19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-116067185-2	chr2	116066625	116067625	+	761.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NR_153841)	promoter-TSS (NR_153841)	-100.0	NR_153841	654793.0	Mm.448948	NR_153841		G630016G05Rik	-	RIKEN cDNA G630016G05 gene	ncRNA	4.0	0.0	0.0	0.0	0.0	2.5
Merged-chr8-6082958-1	chr8	6082458	6083458	+	761.0	f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-977671.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	0.5	1.5	1.0	6.0	1.5	3.0
Merged-chr2-50705127-1	chr2	50704627	50705627	+	761.0	f0_balb.idr	Intergenic	Intergenic	-204557.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-70265401-1	chr4	70264901	70265901	+	761.0	f0_balb.idr	intron (NM_001313762, intron 21 of 33)	intron (NM_001313762, intron 21 of 33)	145034.0	NM_001313762	214444.0	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5663928-1	chr18	5663428	5664428	+	761.0	f1_balb.idr	intron (NM_001360981, intron 2 of 8)	intron (NM_001360981, intron 2 of 8)	71281.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	0.0	0.0	0.0	2.0	0.0	0.0
Merged-chr12-108693573-2	chr12	108693073	108694073	+	761.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027299, intron 1 of 2)	intron (NM_027299, intron 1 of 2)	8733.0	NM_001171002	70059.0	Mm.207605	NM_027299	ENSMUSG00000021263	Degs2	2210008A03Rik|AI852933|DES2	delta(4)-desaturase, sphingolipid 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5745110-3	chr11	5744600	5745600	+	761.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361588, intron 1 of 6)	L1MB4|LINE|L1	-3924.0	NM_178623	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69807440-1	chr8	69806940	69807940	+	761.0	f1_c57bl6.idr	exon (NM_133224, exon 26 of 26)	exon (NM_133224, exon 26 of 26)	-1247.0	NM_198101	78816.0	Mm.324305	NM_198101	ENSMUSG00000036246	Gmip	5031419I10Rik	Gem-interacting protein	protein-coding	0.0	0.0	2.5	1.5	0.0	0.5
Merged-chr7-16319429-2	chr7	16318929	16319929	+	761.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001285892)	TTS (NM_001285892)	9846.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0.0	0.0	3.5	0.0	0.0	2.5
Merged-chr7-105603455-2	chr7	105602955	105603955	+	761.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3339.0	NM_017371	15458.0	Mm.3485	NM_017371	ENSMUSG00000030895	Hpx	Hpxn|hx	hemopexin	protein-coding	2.0	0.5	2.5	3.5	0.5	0.5
Merged-chr18-50055675-1	chr18	50055175	50056175	+	761.0	f1_c57bl6.idr	intron (NM_134131, intron 1 of 1)	intron (NM_134131, intron 1 of 1)	-2013.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	32.0	98.0	64.5	20.0	26.5	30.5
Merged-chr6-45026495-3	chr6	45025970	45026970	+	761.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33591.0	NM_001004357	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-59182429-2	chr12	59181929	59182929	+	761.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001165253, intron 19 of 22)	MTC|LTR|ERVL-MaLR	37054.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29172101-1	chr17	29171601	29172601	+	761.0	f1_c57bl6.idr	intron (NM_001360239, intron 13 of 21)	intron (NM_001360239, intron 13 of 21)	37045.0	NM_001002786	442827.0	Mm.440341	NM_001002786	ENSMUSG00000064147	Rab44	9830134C10Rik	RAB44, member RAS oncogene family	protein-coding	2.5	3.5	5.0	11.5	10.0	4.5
Merged-chr5-147660053-2	chr5	147659553	147660553	+	761.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010228, intron 10 of 29)	intron (NM_010228, intron 10 of 29)	65935.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	0.0	2.0	0.0	4.0	0.0	0.0
Merged-chr2-32963662-2	chr2	32963162	32964162	+	761.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_002898)	TTS (NR_002898)	361.0	NR_002898	104367.0	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-69349445-1	chr17	69348945	69349945	+	761.0	f0_balb.idr	Intergenic	Intergenic	-33730.0	NM_001356283	22666.0	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding	5.0	0.0	0.0	5.0	0.0	0.0
Merged-chr9-41174207-1	chr9	41173707	41174707	+	761.0	f1_balb.idr	Intergenic	Intergenic	-16145.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	1.0	0.0	0.5	0.0	1.0	6.0
Merged-chr14-18211023-2	chr14	18210523	18211523	+	761.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011584, intron 6 of 7)	intron (NM_011584, intron 6 of 7)	28083.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr9-121423876-1	chr9	121423376	121424376	+	761.0	f1_c57bl6.idr	intron (NM_001357968, intron 1 of 14)	intron (NM_001357968, intron 1 of 14)	20430.0	NM_001357968	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	6.5	16.0	5.0	0.0	1.0	1.5
Merged-chr11-76576071-2	chr11	76575571	76576571	+	761.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198894, intron 1 of 22)	intron (NM_198894, intron 1 of 22)	1668.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	14.0	6.5	2.5	14.5	3.5	1.0
Merged-chr15-81020478-2	chr15	81019978	81020978	+	761.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 7 of 13)	intron (NM_001082536, intron 7 of 13)	42713.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129621343-1	chr2	129620843	129621843	+	761.0	f1_balb.idr	intron (NM_001355158, intron 7 of 8)	intron (NM_001355158, intron 7 of 8)	25881.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	5.0	11.0	2.0	5.5	5.5	7.0
Merged-chr7-118646482-4	chr7	118645988	118646988	+	761.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028930, intron 5 of 17)	ORR1G|LTR|ERVL-MaLR	12752.0	NM_028930	74424.0	Mm.11068	NM_028930	ENSMUSG00000030650	Tmc5	4932443L08Rik|AU016085	transmembrane channel-like gene family 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-45543616-3	chr11	45543060	45544060	+	761.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-264523.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	2.5	4.5	0.0	10.0	4.5	0.5
Merged-chr1-122048186-2	chr1	122047686	122048686	+	761.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-156959.0	NR_151524	102638832.0	Mm.112794	NR_151524	ENSMUSG00000099960	Gm28590	-	predicted gene 28590	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-63970609-2	chr3	63970109	63971109	+	761.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-5534.0	NM_001033300	229363.0	Mm.331051	NM_001033300	ENSMUSG00000027823	Gmps	670032|AA591640|AI047208|Gm9479	guanine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130936022-2	chr4	130935522	130936522	+	761.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010686, exon 8 of 8)	3' UTR (NM_010686, exon 8 of 8)	-8363.0	NM_010769	17180.0	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115858150-2	chr11	115857650	115858650	+	761.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34092.0	NM_001252532	217325.0	Mm.290450	NM_145438	ENSMUSG00000020782	Llgl2	9130006H11Rik|Llglh2	LLGL2 scribble cell polarity complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88468208-2	chr3	88467708	88468708	+	761.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-7026.0	NM_001163489	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102941088-2	chr2	102940545	102941545	+	761.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39380.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.0	7.5	3.5	1.0	6.5	15.0
Merged-chr4-127024675-2	chr4	127024175	127025175	+	761.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023603, intron 4 of 9)	PB1D9|SINE|Alu	3374.0	NM_023603	71514.0	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85833180-2	chr11	85832680	85833680	+	761.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_077059)	promoter-TSS (NR_077059)	565.0	NM_009324	21385.0	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47431198-1	chr19	47430698	47431698	+	761.0	f1_balb.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	33213.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0.0	0.0	8.0	0.0	8.0	3.5
Merged-chr6-122666180-2	chr6	122665680	122666680	+	761.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39756.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24726089-2	chr17	24725564	24726564	+	761.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1676.0	NM_026684	68342.0	Mm.1129	NM_026684	ENSMUSG00000040048	Ndufb10	0610011B04Rik|22kDa|PDSW	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10	protein-coding	9.0	8.0	4.0	3.5	11.5	6.5
Merged-chr6-29277732-2	chr6	29277232	29278232	+	761.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-3409.0	NM_001101486	245884.0	Mm.33683	NM_001101486	ENSMUSG00000079652	Fam71f2	AI507611|GARI	family with sequence similarity 71, member F2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93603151-1	chr16	93602651	93603651	+	761.0	f1_c57bl6.idr	5' UTR (NM_145482, exon 2 of 12)	5' UTR (NM_145482, exon 2 of 12)	664.0	NM_145482	224440.0	Mm.10628	NM_145482	ENSMUSG00000022948	Setd4	AY037804|C21orf18|ORF21	SET domain containing 4	protein-coding	5.0	13.0	2.0	2.0	12.5	4.5
Merged-chr15-53344027-1	chr15	53343527	53344527	+	761.0	f0_balb.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	2156.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35876320-2	chr18	35875820	35876820	+	761.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21633.0	NM_001357459	67393.0	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-116416740-3	chr12	116416257	116417257	+	761.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_133762, intron 7 of 28)	MTD|LTR|ERVL-MaLR	11355.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	23.0	32.0	20.0	19.5	26.5	27.5
Merged-chr10-81313217-2	chr10	81312717	81313717	+	761.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 12 of 17)	intron (NM_001293647, intron 12 of 17)	-7886.0	NM_027381	70312.0	Mm.87628	NM_027381	ENSMUSG00000034889	Cactin	2510012J08Rik	cactin, spliceosome C complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34633881-2	chr17	34633381	34634381	+	761.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4195.0	NM_030890	260297.0	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31|SynDIG4	proline-rich transmembrane protein 1	protein-coding	23.0	71.5	22.5	26.0	28.5	42.5
Merged-chr1-119771004-2	chr1	119770504	119771504	+	761.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019933, intron 5 of 26)	Lx5c|LINE|L1	66067.0	NM_019933	19258.0	Mm.458796	NM_019933	ENSMUSG00000026384	Ptpn4	PTPMEG|Ptn4|TEP|TEP/mPTPMEG|hPTP-MEG	protein tyrosine phosphatase, non-receptor type 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-10878670-2	chr15	10878170	10879170	+	761.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49619.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73809474-2	chr13	73808974	73809974	+	761.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 21 of 24)	intron (NM_001360694, intron 21 of 24)	38157.0	NM_028186	72293.0	Mm.45506	NM_028186	ENSMUSG00000021567	Nkd2	2210403L10Rik|AW212591|mNkd2	naked cuticle 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-123146518-2	chr10	123146018	123147018	+	761.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301628, intron 7 of 20)	intron (NM_001301628, intron 7 of 20)	50501.0	NM_027604	14479.0	Mm.244209	NM_027604	ENSMUSG00000020124	Usp15	4921514G19Rik|AI327321|E430033I05Rik|Gcap18	ubiquitin specific peptidase 15	protein-coding	1.0	3.5	10.0	0.0	2.5	3.5
Merged-chr17-28698934-2	chr17	28698434	28699434	+	761.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	(TG)n|Simple_repeat|Simple_repeat	6366.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64751395-3	chr5	64750882	64751882	+	761.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52141.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127513925-1	chr3	127513425	127514425	+	761.0	f1_c57bl6.idr	Intergenic	Intergenic	-14810.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	5.0	0.0	2.5	0.0	2.5	0.5
Merged-chr1-180795738-2	chr1	180795238	180796238	+	761.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	17867.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35590621-3	chr17	35590124	35591124	+	760.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23139.0	NM_175148	69542.0	Mm.265291	NM_175148	ENSMUSG00000039269	2300002M23Rik	Stg|emprin	RIKEN cDNA 2300002M23 gene	protein-coding	1.5	0.0	0.0	2.0	0.5	0.5
Merged-chr7-107044583-4	chr7	107044101	107045101	+	760.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8465.0	NM_147034	259036.0	Mm.377801	NM_147034	ENSMUSG00000073898	Olfr713	MOR263-1|P3	olfactory receptor 713	protein-coding	3.0	6.0	13.5	1.0	16.5	8.0
Merged-chr11-110716558-2	chr11	110716058	110717058	+	760.916687	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	237218.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88820265-2	chr15	88819765	88820765	+	760.916626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145477)	promoter-TSS (NM_145477)	619.0	NM_029720	76737.0	Mm.292567	NM_029720	ENSMUSG00000023272	Creld2	5730592L21Rik|C85758	cysteine-rich with EGF-like domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11810580-2	chr11	11810054	11811054	+	760.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1592.0	NM_001163360	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	2.5	0.0	1.0	0.0	0.0	0.0
Merged-chr7-145095179-2	chr7	145094679	145095679	+	760.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112940.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	13.5	3.5	0.0	0.0	0.0	2.0
Merged-chr13-54799848-2	chr13	54799348	54800348	+	760.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10443.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136082551-2	chr5	136082051	136083051	+	760.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1365.0	NM_133914	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122105574-3	chr10	122105058	122106058	+	760.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8456.0	NM_153059	216395.0	Mm.236764	NM_153059	ENSMUSG00000034620	Tmem5	6330415D21Rik	transmembrane protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5106127-3	chr19	5105639	5106639	+	760.877747	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029576, intron 1 of 5)	intron (NM_029576, intron 1 of 5)	857.0	NM_029576	76308.0	Mm.182563	NM_029576	ENSMUSG00000024870	Rab1b	1110011F09Rik	RAB1B, member RAS oncogene family	protein-coding	0.0	1.5	3.0	4.5	7.0	19.5
Merged-chr6-113304961-2	chr6	113304461	113305461	+	760.875	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_170673, exon 20 of 20)	3' UTR (NM_170673, exon 20 of 20)	-2176.0	NM_030178	78783.0	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-108135931-2	chr13	108135445	108136445	+	760.875	f0_balb.idr|f0_c57.idr	intron (NM_001360140, intron 1 of 4)	intron (NM_001360140, intron 1 of 4)	22680.0	NM_001360140	75597.0	Mm.276040	NM_001127346	ENSMUSG00000068184	Ndufaf2	1810058I14Rik|C86051|Ndufa12l|mimitin	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2	protein-coding	12.5	4.0	5.5	6.5	13.5	18.0
Merged-chr2-11490782-3	chr2	11490286	11491286	+	760.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133232, intron 3 of 14)	ID4|SINE|ID	11304.0	NM_001177754	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-66848296-3	chr10	66847843	66848843	+	760.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72041.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106687536-3	chr11	106687037	106688037	+	760.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 6 of 14)	intron (NM_001305158, intron 6 of 14)	27744.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127123622-4	chr10	127123111	127124111	+	760.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2451.0	NM_001171026	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95834740-3	chr13	95834236	95835236	+	760.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 2 of 35)	L1M4|LINE|L1	57186.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	5.0	3.5	12.0	4.5	10.0	9.5
Merged-chr16-24736038-2	chr16	24735538	24736538	+	760.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145954, intron 2 of 7)	intron (NM_001145954, intron 2 of 7)	14183.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-42463489-4	chr15	42462992	42463992	+	760.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286062, intron 6 of 8)	intron (NM_001286062, intron 6 of 8)	213485.0	NM_001286062	11600.0	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-53468591-6	chr17	53468094	53469094	+	760.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5273.0	NM_172497	211482.0	Mm.60887	NM_172497	ENSMUSG00000023931	Efhb	4921525D22Rik	EF hand domain family, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-28832281-4	chr6	28831793	28832793	+	760.78125	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138682)	promoter-TSS (NM_138682)	-546.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16200442-3	chr19	16199938	16200938	+	760.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	36340.0	NR_033228	595139.0	Mm.405662	NR_033228		E030024N20Rik	9030417F11Rik|Ppia-ps8	peptidylprolyl isomerase A pseudogene 8	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108702018-3	chr6	108701514	108702514	+	760.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-41080.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0.5	6.0	16.5	1.5	2.5	7.5
Merged-chr13-109922421-3	chr13	109921923	109922923	+	760.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 8 of 16)	intron (NM_011056, intron 8 of 16)	18614.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.0	1.0	0.0	1.0	0.5	2.0
Merged-chr13-113693601-3	chr13	113693112	113694112	+	760.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29936.0	NM_019960	56534.0	Mm.41410	NM_019960	ENSMUSG00000051456	Hspb3	2310035K17Rik|AI844863|Hsbp3|spb3	heat shock protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49220809-3	chr13	49220299	49221299	+	760.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-4773.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-109479252-3	chr7	109478752	109479752	+	760.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170913, intron 7 of 19)	intron (NM_001170913, intron 7 of 19)	14486.0	NM_001170913	330627.0	Mm.183528	NM_181853	ENSMUSG00000031026	Trim66	Kiaa0298-hp|Tif1d	tripartite motif-containing 66	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11494153-2	chr2	11493653	11494653	+	760.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	ID_B1|SINE|B4	7937.0	NM_001177754	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45271409-2	chr9	45270909	45271909	+	760.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2260.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-60015619-2	chr1	60015119	60016119	+	760.75	f0_balb.idr|f1_balb.idr	intron (NM_001357296, intron 4 of 10)	A-rich|Low_complexity|Low_complexity	27503.0	NM_001357296	70375.0	Mm.17834	NM_027407	ENSMUSG00000026018	Ica1l	1700030B17Rik|Als2cr15|b2b3465Clo	islet cell autoantigen 1-like	protein-coding	41.0	61.0	36.5	55.5	153.5	50.5
Merged-chr9-103367948-2	chr9	103367448	103368448	+	760.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2168.0	NM_175565	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	1.0	4.0	1.0	0.0	2.5	0.0
Merged-chr13-12873077-2	chr13	12872577	12873577	+	760.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72998.0	NM_011118	18812.0	Mm.457984	NM_011118	ENSMUSG00000056457	Prl2c3	Ghd1|MRP-2|MRP-3|Mrpplf3|PLF-2|PLF-3|Plf2|Prl2c4|mrp/plf3	prolactin family 2, subfamily c, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-66536143-2	chr6	66535643	66536643	+	760.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355624, intron 2 of 5)	intron (NM_001355624, intron 2 of 5)	922.0	NM_001355624	56150.0	Mm.489653	NM_019499	ENSMUSG00000029910	Mad2l1	AA673185|MAD2	MAD2 mitotic arrest deficient-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18108410-4	chr16	18107910	18108910	+	760.729126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19220.0	NM_011172	19125.0	Mm.28456	NM_011172	ENSMUSG00000003526	Prodh	Pro-1|Pro1|Ym24d07	proline dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-157518410-4	chr1	157517903	157518903	+	760.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033354, intron 2 of 27)	intron (NM_033354, intron 2 of 27)	-6680.0	NR_151610	102632813.0	Mm.420137	NR_151610		Gm15486	-	predicted gene 15486	ncRNA	10.5	12.0	17.0	3.5	3.5	4.0
Merged-chr18-46520693-2	chr18	46520193	46521193	+	760.6999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_173423, intron 2 of 2)	Lx6|LINE|L1	5278.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-88863947-3	chr11	88863482	88864482	+	760.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126433, intron 3 of 4)	CpG	604.0	NM_001042541	11640.0	Mm.2969	NM_009648	ENSMUSG00000018428	Akap1	AKAP121|AKAP84|Akap|C76494|C81186|DAKAP1|S-AKAP84	A kinase (PRKA) anchor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117444501-3	chr2	117444002	117445002	+	760.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101625.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr13-51696701-3	chr13	51696192	51697192	+	760.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44984.0	NM_029279	75420.0	Mm.275981	NM_029279	ENSMUSG00000035139	Secisbp2	2210413N07Rik|2810012K13Rik|SBP2	SECIS binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-3009578-1	chr18	3009078	3010078	+	760.666687	f1_balb.idr	Intergenic	Intergenic	113834.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-63038062-3	chr13	63037561	63038561	+	760.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 3 of 15)	intron (NM_001289926, intron 3 of 15)	73168.0	NM_001289924	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.0	0.5	2.5	0.0	0.5	2.5
Merged-chr16-8412433-3	chr16	8411916	8412916	+	760.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029070, intron 2 of 3)	intron (NM_029070, intron 2 of 3)	12720.0	NM_029070	74720.0	Mm.159318	NM_029070	ENSMUSG00000022715	Tmem114	4930511J11Rik|Cldn26	transmembrane protein 114	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-28699962-3	chr12	28699460	28700460	+	760.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161410, intron 8 of 11)	intron (NM_001161410, intron 8 of 11)	20635.0	NR_105902	102465980.0		NR_105902	ENSMUSG00000098579	Mir6937	Gm27448|mmu-mir-6937	microRNA 6937	ncRNA	2.5	5.0	3.0	0.0	1.0	0.0
Merged-chr6-129231810-3	chr6	129231360	129232360	+	760.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040265)	TTS (NR_040265)	6185.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	16.0	44.0	30.0	15.5	54.5	15.5
Merged-chr12-41484917-3	chr12	41484396	41485396	+	760.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271708, intron 1 of 2)	intron (NM_001271708, intron 1 of 2)	1161.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46868897-4	chr8	46868403	46869403	+	760.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117984.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114671948-2	chr11	114671448	114672448	+	760.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048058, intron 3 of 3)	intron (NM_001048058, intron 3 of 3)	3167.0	NM_001048058	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126521117-2	chr8	126520617	126521617	+	760.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46052.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136749392-2	chr1	136748892	136749892	+	760.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53181.0	NR_037986	100503474.0	Mm.428276	NR_037986		Platr22	Gm16880	pluripotency associated transcript 22	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-144876045-2	chr5	144875545	144876545	+	760.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029438)	TTS (NM_029438)	20771.0	NR_106006	102465629.0		NR_106006	ENSMUSG00000098822	Mir7039	Gm27824|mmu-mir-7039	microRNA 7039	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43910560-2	chr5	43910060	43911060	+	760.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007646, exon 8 of 8)	3' UTR (NM_007646, exon 8 of 8)	41751.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.0	3.0	0.5	0.0	0.0	0.0
Merged-chr8-123332888-4	chr8	123332379	123333379	+	760.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172287, exon 1 of 15)	exon (NM_172287, exon 1 of 15)	166.0	NM_172287	234857.0	Mm.150200	NM_172287	ENSMUSG00000010154	Spire2	BC026502|Spir-2|Spir2	spire type actin nucleation factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34198902-4	chr19	34198445	34199445	+	760.625	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	6011.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-67080392-3	chr11	67079897	67080897	+	760.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099635, intron 3 of 40)	intron (NM_001099635, intron 3 of 40)	2097.0	NM_001099635	17883.0	Mm.340090	NM_001099635	ENSMUSG00000020908	Myh3	MyHC-emb|Myhs-e|Myhse	myosin, heavy polypeptide 3, skeletal muscle, embryonic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165873918-4	chr2	165873383	165874383	+	760.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	4554.0	NM_001291158	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	15.5	39.5	17.5	11.5	25.5	34.5
Merged-chr13-40917451-5	chr13	40916916	40917916	+	760.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133219)	promoter-TSS (NM_133219)	-218.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-125119285-2	chr4	125118785	125119785	+	760.583313	f1_balb.idr|f1_c57bl6.idr	exon (NM_153159, exon 6 of 6)	exon (NM_153159, exon 6 of 6)	8596.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-83502390-3	chr12	83501869	83502869	+	760.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14633.0	NM_058212	70127.0	Mm.151308	NM_058212	ENSMUSG00000021221	Dpf3	2810403B03Rik|6530402L11Rik|BAF45C|C78788|CERD4|cer-d4	D4, zinc and double PHD fingers, family 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84185141-3	chr17	84184685	84185685	+	760.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001001806, exon 2 of 2)	3' UTR (NM_001001806, exon 2 of 2)	2762.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170550254-2	chr1	170549754	170550754	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 1 of 9)	intron (NM_001109985, intron 1 of 9)	6856.0	NM_027528	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	0.0	2.5	1.0	0.0	2.5	0.0
Merged-chr11-98401002-2	chr11	98400502	98401502	+	760.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033537)	promoter-TSS (NM_001033537)	-512.0	NM_001033537	320655.0	Mm.86519	NM_001033537	ENSMUSG00000038208	Pgap3	CAB2|D430035D22Rik|Perld1	post-GPI attachment to proteins 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25522649-2	chr14	25522149	25523149	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 2 of 23)	intron (NM_183208, intron 2 of 23)	-11790.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-60998806-2	chr9	60998306	60999306	+	760.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18263.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34531071-2	chr5	34530634	34531634	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	5350.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	23.5	10.5	10.5	20.0	10.0	7.5
Merged-chr17-8303245-2	chr17	8302745	8303745	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_073374, intron 1 of 4)	intron (NR_073374, intron 1 of 4)	-7843.0	NM_001357890	106489.0	Mm.311080	NM_134114	ENSMUSG00000073468	Sft2d1	5630401J11Rik|AA409698	SFT2 domain containing 1	protein-coding	3.0	0.5	7.0	1.5	0.0	3.5
Merged-chr2-60216585-3	chr2	60216059	60217059	+	760.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020575, intron 1 of 9)	B1_Mm|SINE|Alu	6623.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11455145-3	chr11	11454624	11455624	+	760.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015785, intron 2 of 7)	L1M4|LINE|L1	7295.0	NM_015785	53604.0	Mm.9500	NM_015785	ENSMUSG00000020193	Zpbp	4930486K01Rik|Iam38|Sp38	zona pellucida binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-67804488-2	chr14	67803988	67804988	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177780, intron 25 of 51)	B3A|SINE|B2	55257.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	4.0	12.5	15.0	1.0	0.0	5.0
Merged-chr10-54118987-2	chr10	54118487	54119487	+	760.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43065.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81013303-2	chr15	81012803	81013803	+	760.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_153049, exon 13 of 13)	exon (NM_153049, exon 13 of 13)	35538.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59046458-2	chr15	59045958	59046958	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	35568.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-30810353-2	chr10	30809853	30810853	+	760.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7027.0	NM_001358842	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-52302793-2	chr1	52302293	52303293	+	760.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-69561.0	NM_001113383	14660.0	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-62911074-2	chr14	62910574	62911574	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 3 of 11)	intron (NM_175546, intron 3 of 11)	45532.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-130810642-2	chr7	130810142	130811142	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081038, intron 10 of 15)	intron (NM_001081038, intron 10 of 15)	36573.0	NM_001081038	330660.0	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139367072-2	chr5	139366572	139367572	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	B3|SINE|B2	2673.0	NR_029768	723898.0		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25615662-2	chr14	25615162	25616162	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 6 of 23)	intron (NM_183208, intron 6 of 23)	12149.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	0.0	0.0	4.5	0.0	2.0	1.5
Merged-chr7-92711795-2	chr7	92711294	92712294	+	760.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	29665.0	NR_015510	666737.0	Mm.473620	NR_015510	ENSMUSG00000074024	4632427E13Rik	AU015482	RIKEN cDNA 4632427E13 gene	ncRNA	7.0	17.0	13.5	3.5	10.0	3.5
Merged-chr2-32539703-2	chr2	32539203	32540203	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153560, intron 1 of 10)	intron (NM_153560, intron 1 of 10)	4344.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126199843-3	chr4	126199333	126200333	+	760.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356455, intron 1 of 11)	intron (NM_001356455, intron 1 of 11)	1174.0	NM_001356456	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	3.5	20.0	4.0	2.0	7.5	11.0
Merged-chr11-83646921-2	chr11	83646421	83647421	+	760.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011337)	TTS (NM_011337)	2457.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107782205-2	chr3	107781705	107782705	+	760.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21736.0	NM_001113529	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	6.5	9.5	3.5	7.5	9.5	3.5
Merged-chr12-110665388-2	chr12	110664888	110665888	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030238, intron 73 of 76)	intron (NM_030238, intron 73 of 76)	17231.0	NM_025488	66323.0	Mm.273316	NM_025488	ENSMUSG00000056508	1700001K19Rik	-	RIKEN cDNA 1700001K19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-58776821-2	chr18	58776320	58777320	+	760.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-59543.0	NM_175506	240322.0	Mm.71963	NM_175506	ENSMUSG00000053441	Adamts19	4831407I23Rik|AU015154|D230034E10Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 19	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr14-15076336-2	chr14	15075836	15076836	+	760.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	255521.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70758734-2	chr8	70758234	70759234	+	760.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009001)	TTS (NM_009001)	2187.0	NM_183170	234384.0	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	0.0	6.0	0.5	3.0	3.5	1.0
Merged-chr16-38753276-2	chr16	38752776	38753776	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152434, intron 2 of 6)	intron (NR_152434, intron 2 of 6)	11017.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79621929-2	chr11	79621429	79622429	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175543, intron 3 of 14)	intron (NM_175543, intron 3 of 14)	1234.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23981304-2	chr17	23980795	23981795	+	760.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6065.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	55.0	146.5	103.0	116.5	198.0	148.5
Merged-chr17-43012905-4	chr17	43012401	43013401	+	760.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3654.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	1.0	0.0	2.0	0.0	0.0	3.0
Merged-chr7-92668105-2	chr7	92667605	92668605	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029078, intron 1 of 15)	intron (NM_029078, intron 1 of 15)	1807.0	NM_029078	74737.0	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	1.0	6.5	2.5	3.0	1.5	11.0
Merged-chr19-42006273-2	chr19	42005773	42006773	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	24510.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	2.0	1.0	11.5	0.0	0.0	6.5
Merged-chr2-6722942-2	chr2	6722442	6723442	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 3 of 15)	intron (NM_001110232, intron 3 of 15)	-1280.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73802537-2	chr13	73802037	73803037	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 17 of 24)	intron (NM_001360694, intron 17 of 24)	38840.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73799015-2	chr13	73798515	73799515	+	760.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011390, exon 14 of 24)	exon (NM_011390, exon 14 of 24)	35318.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69555789-2	chr11	69555289	69556289	+	760.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007911, exon 5 of 5)	3' UTR (NM_007911, exon 5 of 5)	4448.0	NM_007911	13643.0	Mm.249637	NM_007911	ENSMUSG00000003934	Efnb3	EFL-6|ELF-3|Elk-L3|Epl8|LERK-8|NLERK-2	ephrin B3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120451725-2	chr1	120451277	120452277	+	760.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	53247.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	5.5	7.0	10.5	0.5	7.5	3.0
Merged-chr1-131980744-1	chr1	131980244	131981244	+	760.5	f0_balb.idr	intron (NM_001177628, intron 4 of 4)	intron (NM_001177628, intron 4 of 4)	10135.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-71679989-2	chr16	71679489	71680489	+	760.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	430085.0	NR_040576	78221.0	Mm.399298	NR_040576		4930567J20Rik	-	RIKEN cDNA 4930567J20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95509623-5	chr10	95509130	95510130	+	760.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20A3_MM|LTR|ERVK	-5532.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-154318016-3	chr3	154317520	154318520	+	760.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010713, intron 6 of 8)	intron (NM_010713, intron 6 of 8)	12540.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	0.0	0.0	0.0	2.5	0.0	0.0
Merged-chr1-53856897-3	chr1	53856383	53857383	+	760.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 19 of 28)	intron (NM_001001883, intron 19 of 28)	7459.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	41.5	34.5	41.0	17.0	64.5	31.5
Merged-chr1-155018613-3	chr1	155018123	155019123	+	760.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	64641.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-123084978-4	chr7	123084479	123085479	+	760.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38906.0	NM_144925	233833.0	Mm.102305	NM_144925	ENSMUSG00000052707	Tnrc6a	2010321I05Rik|3110054G10Rik|AW557223|CAGH26|D130023A07Rik|GW182|Tnrc6	trinucleotide repeat containing 6a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32053641-4	chr5	32053095	32054095	+	760.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 10 of 11)	intron (NM_144541, intron 10 of 11)	-82877.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	1.0	0.0	6.0	2.0	0.0	0.0
Merged-chr14-120342127-3	chr14	120341630	120342630	+	760.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	35678.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0.0	1.5	1.0	0.0	1.5	2.0
Merged-chr2-158406098-2	chr2	158405598	158406598	+	760.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	-3755.0	NM_001291137	228850.0	Mm.398185	NM_177227	ENSMUSG00000027652	Ralgapb	AI507211|B230339M05Rik|p170	Ral GTPase activating protein, beta subunit (non-catalytic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35921331-2	chr17	35920831	35921831	+	760.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357740, intron 1 of 18)	intron (NM_001357740, intron 1 of 18)	2059.0	NM_001357740	52040.0	Mm.29385	NM_175934	ENSMUSG00000039220	Ppp1r10	2610025H06Rik|Cat53|D17Ertd808e|Fb19|Pnuts	protein phosphatase 1, regulatory subunit 10	protein-coding	2.5	4.5	4.5	0.0	7.5	0.0
Merged-chr5-65953525-2	chr5	65953025	65954025	+	760.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-13599.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11773553-2	chr19	11773050	11774050	+	760.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025606, intron 3 of 3)	intron (NM_025606, intron 3 of 3)	3135.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	3.5	11.5	1.0	2.0	6.5	1.0
Merged-chr5-103937688-3	chr5	103937200	103938200	+	760.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-26441.0	NM_001359986	246293.0	Mm.179871	NM_178741	ENSMUSG00000029312	Klhl8	2310001P09Rik|D5Ertd431e	kelch-like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-94272852-2	chr2	94272352	94273352	+	760.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11453.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-12228500-4	chr2	12228005	12229005	+	760.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001309, intron 13 of 29)	intron (NM_001001309, intron 13 of 29)	-72741.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83665251-4	chr7	83664745	83665745	+	760.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 10 of 18)	intron (NM_001360088, intron 10 of 18)	-9750.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	2.0	0.0	1.5	0.5	3.5	1.0
Merged-chr13-49362988-2	chr13	49362488	49363488	+	760.325012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039179, intron 1 of 6)	intron (NM_001039179, intron 1 of 6)	21439.0	NM_001039180	76895.0	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	BICD cargo adaptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-85065062-6	chr16	85064613	85065613	+	760.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 5 of 15)	intron (NM_001198825, intron 5 of 15)	92902.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20719400-4	chr10	20718897	20719897	+	760.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 1 of 12)	G-rich|Low_complexity|Low_complexity	5681.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122196868-3	chr7	122196346	122197346	+	760.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10615.0	NM_001316689	26918.0	Mm.20452	NM_012016	ENSMUSG00000030866	Ern2	Ern1|Ire1|Ire1b|ire1-beta|mIre1	endoplasmic reticulum (ER) to nucleus signalling 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-95941905-3	chr5	95941395	95942395	+	760.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15044.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr14-122876363-4	chr14	122875857	122876857	+	760.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 22 of 24)	intron (NR_153443, intron 22 of 24)	-36673.0	NR_155287	105245866.0	Mm.390754	NM_001039531	ENSMUSG00000075463	Gm15735	4930594M22Rik|F930011C10Rik	predicted gene 15735	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30944185-2	chr7	30943685	30944685	+	760.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_032541)	promoter-TSS (NM_032541)	-156.0	NM_032541	84506.0	Mm.439939	NM_032541	ENSMUSG00000050440	Hamp	Hamp1|Hepc|Hepc1	hepcidin antimicrobial peptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-27385268-3	chr16	27384742	27385742	+	760.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3714.0	NM_001025615	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-62858161-4	chr16	62857671	62858671	+	760.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011173, intron 1 of 14)	MTE-int|LTR|ERVL-MaLR	3864.0	NM_011173	19128.0	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110060016-2	chr7	110059516	110060516	+	760.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1686.0	NM_009281	20841.0	Mm.10815	NM_009281	ENSMUSG00000061079	Zfp143	AA959806|AU015869|D7Ertd805e|KRAB14|SBF|Staf|Zfp79|Zfp80-rs1|Znf143|pHZ-1	zinc finger protein 143	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95846582-3	chr4	95846087	95847087	+	760.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113412, intron 13 of 15)	intron (NM_001113412, intron 13 of 15)	120448.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70671017-2	chr8	70670553	70671553	+	760.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2178.0	NM_001359042	50783.0	Mm.248188	NM_015816	ENSMUSG00000031848	Lsm4	-	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	2.5	5.0	1.5	0.0	1.5	0.0
Merged-chr9-90210948-2	chr9	90210448	90211448	+	760.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 10 of 12)	intron (NM_194334, intron 10 of 12)	47970.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0.0	3.0	0.0	3.0	1.5	4.0
Merged-chr6-65508394-2	chr6	65507894	65508894	+	760.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82004.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-9991971-3	chr1	9991473	9992473	+	760.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145692, intron 5 of 8)	intron (NM_145692, intron 5 of 8)	17163.0	NR_110971	69312.0	Mm.386795	NM_027033	ENSMUSG00000025916	Ppp1r42	1700011J18Rik|4930418G15Rik|Lrrc67|TLRR	protein phosphatase 1, regulatory subunit 42	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr16-30689852-3	chr16	30689364	30690364	+	760.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	90141.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	63.5	179.5	97.5	14.5	5.0	17.5
Merged-chr12-44276168-3	chr12	44275642	44276642	+	760.209534	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026164, intron 1 of 9)	L1MA4|LINE|L1	6988.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	4.0	10.0	4.5	6.0	12.0	8.0
Merged-chr13-91132998-3	chr13	91132479	91133479	+	760.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025770, intron 3 of 7)	intron (NM_025770, intron 3 of 7)	91008.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43577487-2	chr4	43576987	43577987	+	760.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172692, intron 1 of 16)	intron (NM_172692, intron 1 of 16)	-1248.0	NM_172866	242406.0	Mm.259311	NM_172866	ENSMUSG00000028468	Rgp1	1110029E03Rik|AI527196|F730001J03|mKIAA0258	RAB6A GEF compex partner 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46613352-2	chr19	46612855	46613855	+	760.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177812, intron 2 of 4)	intron (NM_001177812, intron 2 of 4)	-10046.0	NM_001177813	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	9.5	1.5	14.0	7.0	0.0	10.5
Merged-chr1-21080542-2	chr1	21080045	21081045	+	760.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-1320.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	1.0	0.5	0.0	7.5	1.0	0.0
Merged-chr11-83531371-2	chr11	83530871	83531871	+	760.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013653)	promoter-TSS (NM_013653)	-853.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-38613507-3	chr13	38613002	38614002	+	760.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139063, intron 3 of 4)	intron (NM_139063, intron 3 of 4)	21607.0	NM_139063	17828.0	Mm.261554	NM_139063	ENSMUSG00000038982	Bloc1s5	1810074A19Rik|Muted|mu	biogenesis of lysosomal organelles complex-1, subunit 5, muted	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80937893-3	chr12	80937388	80938388	+	760.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	7511.0	NR_045057	100504661.0	Mm.442322	NR_045057	ENSMUSG00000112880	Gm20337	-	predicted gene, 20337	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111422321-3	chr10	111421785	111422785	+	760.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-50942.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86625614-3	chr11	86625117	86626117	+	760.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 7 of 11)	intron (NM_001356531, intron 7 of 11)	-41459.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-66859673-4	chr1	66859169	66860169	+	760.104187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007381, intron 1 of 10)	RMER16|LTR|ERVK	3640.0	NM_007381	11363.0	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28388050-2	chr7	28387550	28388550	+	760.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_026042, intron 3 of 3)	intron (NM_026042, intron 3 of 3)	4640.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49064201-2	chr11	49063701	49064701	+	760.083374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145164)	promoter-TSS (NM_001145164)	11.0	NM_001145164	100039796.0	Mm.482363	NM_001145164	ENSMUSG00000078921	Tgtp2	TGTP	T cell specific GTPase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94696164-4	chr8	94695685	94696685	+	760.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026385)	promoter-TSS (NM_026385)	57.0	NM_026385	67801.0	Mm.279977	NM_026385	ENSMUSG00000031775	Pllp	0610010I06Rik|AV001002|Plapi|Tm4sf11	plasma membrane proteolipid	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-25166826-4	chr5	25166336	25167336	+	760.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14644.0	NM_026449	67909.0	Mm.141471	NM_026449	ENSMUSG00000028938	Galntl5	1700021B12Rik|Galnt15	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-93199948-3	chr14	93199457	93200457	+	760.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271800, intron 3 of 3)	MIR|SINE|MIR	690712.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.0	7.0	9.0	0.0	15.0	6.0
Merged-chr11-78044856-3	chr11	78044337	78045337	+	760.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284228, intron 1 of 11)	intron (NM_001284228, intron 1 of 11)	4530.0	NM_001284228	14252.0	Mm.130227	NM_008028	ENSMUSG00000061981	Flot2	AI573412|Esa|reggie-2	flotillin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-41528765-4	chr3	41528274	41529274	+	760.045837	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_130791)	promoter-TSS (NR_130791)	-300.0	NR_130791	78648.0	Mm.366093	NR_130791		2400006E01Rik	Gm43733|lncRNA-JADE	RIKEN cDNA 2400006E01 gene	ncRNA	14.0	6.0	8.0	0.5	10.0	5.0
Merged-chr7-80639267-3	chr7	80638775	80639775	+	760.044434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040343, intron 3 of 4)	intron (NR_040343, intron 3 of 4)	3258.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	21.0	25.5	16.5	5.0	34.0	27.0
Merged-chr10-9575827-3	chr10	9575331	9576331	+	760.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99377.0	NM_177271	320825.0	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding	0.0	1.0	0.5	4.0	0.0	0.0
Merged-chr16-32819280-1	chr16	32818780	32819780	+	760.0	f1_balb.idr	Intergenic	Intergenic	-8834.0	NM_001256309	381043.0	Mm.303864	NM_001256309	ENSMUSG00000094430	Smbd1	Gm1743|Gm933	somatomedin B domain containing 1	protein-coding	0.0	4.0	0.5	0.5	0.0	0.5
Merged-chr5-144358114-5	chr5	144357648	144358648	+	760.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025833)	promoter-TSS (NM_025833)	-36.0	NM_025833	66898.0	Mm.18814	NM_025833	ENSMUSG00000038859	Baiap2l1	1300006M19Rik|AI585895|IRTKS	BAI1-associated protein 2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35280075-2	chr9	35279575	35280575	+	760.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1030.0	NR_040715	71133.0	Mm.158577	NR_040715	ENSMUSG00000111746	4933422A05Rik	-	RIKEN cDNA 4933422A05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30008189-2	chr16	30007689	30008689	+	760.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033631)	promoter-TSS (NR_033631)	-478.0	NR_033631	100043102.0	Mm.30797	NR_033631	ENSMUSG00000097184	4632428C04Rik	Gm4231	RIKEN cDNA 4632428C04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98718074-2	chr11	98717574	98718574	+	760.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011869, exon 6 of 26)	exon (NM_011869, exon 6 of 26)	11300.0	NM_001361994	23989.0	Mm.246493	NM_011869	ENSMUSG00000017210	Med24	911GSE|AU040102|AW547152|D11Ertd307e|DRIP100|Gse2|Pparb2|Pparbp2|R75526|Thrap4|Trap100	mediator complex subunit 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29500111-2	chr19	29499611	29500611	+	760.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21876.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99284729-3	chr15	99284223	99285223	+	760.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081254, intron 2 of 7)	B4A|SINE|B4	2457.0	NM_001081254	545136.0	Mm.324745	NM_001081254	ENSMUSG00000078907	Fam186b	EG545136	family with sequence similarity 186, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60001192-2	chr10	60000692	60001692	+	760.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025514, intron 1 of 3)	MIR|SINE|MIR	-1613.0	NM_026937	69090.0	Mm.155839	NM_026937	ENSMUSG00000044475	Ascc1	1810015P09Rik|AI550520|ASC1p50|CGI-18	activating signal cointegrator 1 complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-47067529-2	chr7	47067029	47068029	+	760.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	15695.0	NR_106023	102465639.0		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136692689-1	chr6	136692189	136693189	+	760.0	f0_balb.idr	Intergenic	Intergenic	-30796.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	1.0	12.5	15.0	13.5	17.0	8.0
Merged-chr11-61737269-2	chr11	61736769	61737769	+	760.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144806, intron 8 of 11)	B1_Mur4|SINE|Alu	-16470.0	NM_001033227	109342.0	Mm.441070	NM_001033227	ENSMUSG00000042371	Slc5a10	C330021F16Rik|SGLT5	solute carrier family 5 (sodium/glucose cotransporter), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24112601-1	chr7	24112101	24113101	+	760.0	f0_balb.idr	intron (NM_021307, intron 1 of 4)	intron (NM_021307, intron 1 of 4)	281.0	NM_021307	57745.0	Mm.82678	NM_021307	ENSMUSG00000052675	Zfp112	Znf112|Znf228	zinc finger protein 112	protein-coding	2.5	7.5	3.0	2.5	6.0	3.0
Merged-chr14-29941095-1	chr14	29940595	29941595	+	760.0	f1_c57bl6.idr	Intergenic	Intergenic	-27285.0	NM_019979	80795.0	Mm.104491	NM_019979	ENSMUSG00000042682	Selenok	1110001C03Rik|AA673253|HSPC030|Hsp30|Selk	selenoprotein K	protein-coding	3.5	6.5	0.5	7.0	2.5	2.0
Merged-chr2-9952428-2	chr2	9951928	9952928	+	760.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027748, exon 3 of 7)	exon (NM_027748, exon 3 of 7)	46279.0	NR_152218	100126244.0	Mm.86343	NR_152218		Gm13262	-	predicted gene 13262	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165874526-2	chr2	165874016	165875016	+	760.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	3921.0	NM_001291158	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	14.5	107.0	87.0	26.0	73.0	66.5
Merged-chr8-117358551-2	chr8	117358051	117359051	+	760.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	9381.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29788312-2	chr11	29787812	29788812	+	760.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 24 of 41)	(CA)n|Simple_repeat|Simple_repeat	37356.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	2.5	1.5	2.5	0.0	0.0	0.0
Merged-chr16-16536637-1	chr16	16536137	16537137	+	760.0	f0_balb.idr	intron (NM_001301817, intron 1 of 16)	Lx7|LINE|L1	-9226.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120334365-2	chr8	120333865	120334865	+	760.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-106135.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40448187-3	chr10	40447684	40448684	+	760.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291817, intron 4 of 11)	intron (NM_001291817, intron 4 of 11)	98876.0	NM_001291816	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-48492716-3	chr4	48492205	48493205	+	760.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19242.0	NM_001355740	269536.0	Mm.272025	NM_172304	ENSMUSG00000028345	Tex10	2610206N19Rik|2810462N03Rik|BC006867	testis expressed gene 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-98531730-1	chr6	98531230	98532230	+	760.0	f0_balb.idr	Intergenic	Intergenic	-188976.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138291606-1	chr1	138291106	138292106	+	760.0	f0_balb.idr	Intergenic	Intergenic	17868.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13784728-2	chr8	13784228	13785228	+	760.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025924)	promoter-TSS (NM_025924)	-887.0	NM_025924	67031.0	Mm.44858	NM_025924	ENSMUSG00000038398	Upf3a	2600001C03Rik|4930546M19Rik|RENT3A|UPF3	UPF3 regulator of nonsense transcripts homolog A (yeast)	protein-coding	0.0	6.5	0.5	0.5	0.0	1.5
Merged-chr12-110600041-2	chr12	110599541	110600541	+	760.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1354.0	NM_030238	13424.0	Mm.181430	NM_030238	ENSMUSG00000018707	Dync1h1	9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325	dynein cytoplasmic 1 heavy chain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-117298309-2	chr9	117297809	117298809	+	760.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172121, intron 2 of 14)	intron (NM_001172121, intron 2 of 14)	-45826.0	NM_001172124	207181.0	Mm.326411	NM_178660	ENSMUSG00000039607	Rbms3	6720477E09Rik|8430436O14Rik	RNA binding motif, single stranded interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3679592-2	chr8	3679092	3680092	+	760.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025701, exon 2 of 2)	3' UTR (NM_025701, exon 2 of 2)	3115.0	NM_025701	66682.0	Mm.29090	NM_025701	ENSMUSG00000040236	Trappc5	4021401A16Rik|TRS31	trafficking protein particle complex 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45656027-1	chr17	45655527	45656527	+	760.0	f1_c57bl6.idr	intron (NM_001013767, intron 1 of 21)	intron (NM_001013767, intron 1 of 21)	3282.0	NM_001013767	268958.0	Mm.426026	NM_001013767	ENSMUSG00000058626	Capn11	-	calpain 11	protein-coding	9.0	0.0	1.5	0.0	0.0	2.5
Merged-chr10-18845166-2	chr10	18844666	18845666	+	760.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022032)	promoter-TSS (NM_022032)	95.0	NM_022032	64058.0	Mm.28209	NM_022032	ENSMUSG00000019851	Perp	1110017A08Rik|KCP1|KRTCAP1|PIGPC1|THW	PERP, TP53 apoptosis effector	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-138114366-1	chr3	138113866	138114866	+	760.0	f0_balb.idr	intron (NM_001355052, intron 11 of 21)	intron (NM_001355052, intron 11 of 21)	17287.0	NM_008642	17777.0	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding	1.0	1.5	0.5	5.0	6.0	15.0
Merged-chr19-4012029-2	chr19	4011529	4012529	+	760.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133666, intron 1 of 9)	intron (NM_133666, intron 1 of 9)	726.0	NM_133666	17995.0	Mm.29842	NM_133666	ENSMUSG00000037916	Ndufv1	CI-51kD	NADH dehydrogenase (ubiquinone) flavoprotein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122290386-2	chr3	122289886	122290886	+	760.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3317.0	NR_030439	791077.0		NR_030439	ENSMUSG00000076456	Mir760	Mirn760|mir-760|mmu-mir-760	microRNA 760	ncRNA	12.5	3.5	7.0	12.0	3.0	7.0
Merged-chr9-113795471-3	chr9	113794973	113795973	+	760.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286603, intron 1 of 4)	intron (NM_001286603, intron 1 of 4)	2143.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	4.0	0.0	3.5	0.5	1.0	1.0
Merged-chr11-62553772-2	chr11	62553272	62554272	+	760.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_002875)	TTS (NR_002875)	2041.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98517817-3	chr10	98517316	98518316	+	760.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-165949.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16086223-1	chr19	16085723	16086723	+	760.0	f1_balb.idr	Intergenic	Intergenic	-46608.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	17.0	7.5	13.5	14.0	9.5	8.5
Merged-chr18-52410059-2	chr18	52409559	52410559	+	760.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L3b|LINE|CR1	-55634.0	NM_026040	67222.0	Mm.100617	NM_026040	ENSMUSG00000024528	Srfbp1	2810036K01Rik|p49/STRAP	serum response factor binding protein 1	protein-coding	0.0	2.5	1.5	3.5	1.0	0.0
Merged-chr17-74018896-2	chr17	74018396	74019396	+	760.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053188, intron 4 of 4)	intron (NM_053188, intron 4 of 4)	29020.0	NM_053188	94224.0	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45274950-2	chr2	45274450	45275450	+	760.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157508.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27320166-2	chr2	27319666	27320666	+	760.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 2 of 29)	intron (NR_133905, intron 2 of 29)	-72863.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70809027-1	chr14	70808527	70809527	+	760.0	f1_c57bl6.idr	Intergenic	Intergenic	34646.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	0.0	15.0	3.0	6.0	1.0	4.5
Merged-chr10-86887685-2	chr10	86887185	86888185	+	760.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 42 of 68)	intron (NM_138673, intron 42 of 68)	108680.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80611008-2	chr10	80610508	80611508	+	760.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019575, intron 4 of 6)	intron (NM_019575, intron 4 of 6)	1748.0	NR_105877	102465550.0		NR_105877	ENSMUSG00000099283	Mir6912	Gm27990|mmu-mir-6912	microRNA 6912	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134968350-2	chr4	134967850	134968850	+	760.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37370.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-6263454-1	chr6	6262954	6263954	+	760.0	f0_balb.idr	intron (NR_136905, intron 1 of 3)	MLT1B|LTR|ERVL-MaLR	14795.0	NR_136905	101056138.0	Mm.389085	NR_136904	ENSMUSG00000093482	Gm20619	-	predicted gene 20619	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99409801-1	chr7	99409301	99410301	+	760.0	f1_c57bl6.idr	intron (NM_001362166, intron 3 of 18)	intron (NM_001362166, intron 3 of 18)	28283.0	NM_001362166	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	0.0	0.0	0.0	0.0	7.5	1.5
Merged-chr7-104375293-1	chr7	104374793	104375793	+	760.0	f1_balb.idr	Intergenic	Lx2B|LINE|L1	-16647.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	5.0	3.0	5.0	11.5	7.0	2.0
Merged-chr5-28211278-2	chr5	28210778	28211778	+	760.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310512, intron 1 of 3)	(TG)n|Simple_repeat|Simple_repeat	-1110.0	NM_001310511	269637.0	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	0.5	0.0	0.0	0.5	0.0	2.0
Merged-chr11-104329870-2	chr11	104329370	104330370	+	760.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010838, exon 10 of 10)	3' UTR (NM_010838, exon 10 of 10)	98434.0	NM_001285454	17762.0	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-28885300-1	chr13	28884800	28885800	+	760.0	f0_balb.idr	non-coding (NR_045053, exon 1 of 9)	non-coding (NR_045053, exon 1 of 9)	122.0	NR_045054	72518.0	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-70135905-3	chr10	70135402	70136402	+	760.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111121, intron 1 of 8)	B3A|SINE|B2	38781.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-29534439-2	chr10	29533939	29534939	+	760.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028351, intron 1 of 4)	intron (NM_028351, intron 1 of 4)	1428.0	NM_028351	72780.0	Mm.45191	NM_028351	ENSMUSG00000019880	Rspo3	2810459H04Rik|AW742308|Cristin1|Thsd2	R-spondin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40489552-2	chr10	40489052	40490052	+	760.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80810.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-4389163-2	chr10	4388663	4389663	+	760.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1055.0	NM_001033466	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30301035-1	chr7	30300535	30301535	+	760.0	f1_balb.idr	intron (NM_001360764, intron 7 of 13)	(TTTTG)n|Simple_repeat|Simple_repeat	-7718.0	NM_198027	233065.0	Mm.276277	NM_198027	ENSMUSG00000042831	Alkbh6	AI839550|Abh6|C130099A02	alkB homolog 6	protein-coding	20.0	4.0	0.5	13.0	1.0	0.0
Merged-chr17-65838911-1	chr17	65838411	65839411	+	760.0	f1_balb.idr	non-coding (NR_104465, exon 18 of 19)	non-coding (NR_104465, exon 18 of 19)	46012.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	3.5	3.0	2.5	1.0	0.5	1.0
Merged-chr1-54816877-2	chr1	54816430	54817430	+	760.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 2 of 27)	RLTR11A2|LTR|ERVK	109457.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	5.0	8.0	3.5	0.0	1.0	4.0
Merged-chr11-117961773-2	chr11	117961273	117962273	+	760.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	7593.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-153827912-3	chr4	153827413	153828413	+	759.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	122563.0	NR_040670	407793.0	Mm.260950	NR_040670		BC039966	-	cDNA sequence BC039966	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-38394756-3	chr19	38394250	38395250	+	759.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1230.0	NM_175507	240660.0	Mm.262085	NM_175507	ENSMUSG00000044026	Slc35g1	AA590464|D330039I19Rik|Tmem20	solute carrier family 35, member G1	protein-coding	0.0	2.0	1.5	0.0	0.5	0.0
Merged-chr2-151587483-3	chr2	151586987	151587987	+	759.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145535, exon 7 of 9)	exon (NM_145535, exon 7 of 9)	14864.0	NM_145535	228765.0	Mm.32068	NM_145535	ENSMUSG00000027456	Sdcbp2	-	syndecan binding protein (syntenin) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55427447-2	chr13	55427004	55428004	+	759.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021489)	promoter-TSS (NM_021489)	-700.0	NM_021489	58992.0	Mm.42224	NM_021489	ENSMUSG00000021492	F12	FXII|HAF	coagulation factor XII (Hageman factor)	protein-coding	4.0	4.0	6.0	0.5	5.5	1.0
Merged-chr3-31092728-2	chr3	31092228	31093228	+	759.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2330.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142683471-2	chr3	142682971	142683971	+	759.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2A|LINE|L1	-17577.0	NM_173763	229905.0	Mm.289643	NM_173763	ENSMUSG00000040213	Kyat3	Ccbl2|KATIII|Kat3	kynurenine aminotransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-66978865-3	chr3	66978385	66979385	+	759.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302358)	promoter-TSS (NM_001302358)	-74.0	NM_001302358	20429.0	Mm.39093	NM_013665	ENSMUSG00000027833	Shox2	6330543G17Rik|OG12|Og12x|Prx3|SHOT	short stature homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62557266-3	chr11	62556787	62557787	+	759.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	5556.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58274104-8	chr9	58273705	58274705	+	759.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	21041.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145746823-3	chr2	145746337	145747337	+	759.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 3 of 3)	intron (NR_033220, intron 3 of 3)	-39279.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-58574262-3	chr2	58573773	58574773	+	759.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289660, intron 1 of 7)	MIR3|SINE|MIR	6939.0	NM_001289660	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181523006-3	chr2	181522503	181523503	+	759.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271584, intron 2 of 5)	B2_Mm2|SINE|B2	2518.0	NM_001271584	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	4.5	24.5	8.0	6.0	15.5	14.0
Merged-chr4-135285824-2	chr4	135285220	135286220	+	759.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12960.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-114820189-2	chr13	114819689	114820689	+	759.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_013826, intron 2 of 6)	URR1A|DNA|hAT-Charlie	1952.0	NM_001113374	17434.0	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69799630-2	chr11	69799023	69800023	+	759.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010198, intron 2 of 5)	intron (NM_010198, intron 2 of 5)	2193.0	NM_001291104	14166.0	Mm.269011	NM_010198	ENSMUSG00000042826	Fgf11	Fgf-11|Fhf-3|Fhf3	fibroblast growth factor 11	protein-coding	1.0	5.5	0.0	0.0	3.0	0.0
Merged-chr10-43001282-3	chr10	43000773	43001773	+	759.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-10111.0	NR_153349	327749.0	Mm.428887	NR_153349		Gm5079	C230040G06	predicted gene 5079	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-151141761-2	chr4	151141261	151142261	+	759.674988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 9 of 23)	intron (NM_001081557, intron 9 of 23)	52191.0	NM_001308446	105704528.0	Mm.415128	NM_001308446	ENSMUSG00000078491	Gm13090	-	predicted gene 13090	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135011606-2	chr5	135011106	135012106	+	759.666687	f1_balb.idr|f1_c57bl6.idr	TTS (NR_026688)	TTS (NR_026688)	1551.0	NR_026688	69812.0	Mm.18422	NR_026688	ENSMUSG00000085042	Abhd11os	2010001M06Rik|AI462243|Wbscr26|Wnscr26	abhydrolase domain containing 11, opposite strand	ncRNA	0.5	0.0	0.5	0.5	0.0	0.5
Merged-chr19-57925109-3	chr19	57924605	57925605	+	759.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181415, intron 26 of 28)	intron (NM_181415, intron 26 of 28)	-126062.0	NR_049196	100885835.0		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	0.0	0.0	0.0	0.0	3.0	3.0
Merged-chr2-39005905-2	chr2	39005405	39006405	+	759.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025592)	promoter-TSS (NM_025592)	-774.0	NM_025592	66489.0	Mm.345333	NM_025592	ENSMUSG00000062997	Rpl35	2410039E09Rik	ribosomal protein L35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-29839321-5	chr16	29838860	29839860	+	759.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	139764.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108773111-4	chr6	108772686	108773686	+	759.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9873.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	0.0	4.0	5.0	0.0	1.5	1.0
Merged-chr5-145177868-3	chr5	145177359	145178359	+	759.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291249, intron 6 of 7)	intron (NM_001291249, intron 6 of 7)	10646.0	NM_001291248	54188.0	Mm.196884	NM_178576	ENSMUSG00000029625	Cpsf4	30kDa|C79664	cleavage and polyadenylation specific factor 4	protein-coding	19.5	40.0	35.5	17.0	22.0	23.0
Merged-chr15-84120786-3	chr15	84120277	84121277	+	759.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029427, intron 2 of 9)	intron (NM_029427, intron 2 of 9)	2398.0	NM_029427	75772.0	Mm.159565	NM_029427	ENSMUSG00000018868	Pnpla5	4833426H19Rik|GS2L	patatin-like phospholipase domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32762125-3	chr19	32761597	32762597	+	759.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 1 of 8)	(T)n|Simple_repeat|Simple_repeat	4520.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	29.0	110.5	87.5	33.0	95.5	96.5
Merged-chr10-127284321-2	chr10	127283821	127284821	+	759.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_033072, intron 8 of 12)	intron (NM_033072, intron 8 of 12)	4697.0	NM_001347171	110962.0	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-28818043-2	chr2	28817543	28818543	+	759.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22317.0	NM_172977	269252.0	Mm.26043	NM_172977	ENSMUSG00000035666	Gtf3c4	5330400C03|AI426938|AU014771|AU017413|KAT12|TFIIIC90	general transcription factor IIIC, polypeptide 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113148790-2	chr12	113148290	113149290	+	759.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3222.0	NM_007763	12925.0	Mm.272368	NM_007763	ENSMUSG00000006360	Crip1	CRHP|CRP1|Crip	cysteine-rich protein 1 (intestinal)	protein-coding	0.0	0.0	6.0	2.5	6.0	1.5
Merged-chr3-132755961-3	chr3	132755477	132756477	+	759.666626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163455, intron 22 of 25)	intron (NM_001163455, intron 22 of 25)	71833.0	NM_001163455	271981.0	Mm.257864	NM_173032	ENSMUSG00000028030	Tbck	1700120J03Rik|9430001M19|A630047E20Rik|C030007I09Rik|Tbckl	TBC1 domain containing kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68147032-3	chr10	68146553	68147553	+	759.644409	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 4 of 9)	intron (NM_023598, intron 4 of 9)	131673.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	16.0	4.0	7.0	0.0	6.0	3.0
Merged-chr2-120660668-4	chr2	120660161	120661161	+	759.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51066.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-26353882-2	chr4	26353409	26354409	+	759.625	f0_balb.idr|f0_c57.idr	Intergenic	BGLII_B|LTR|ERVK	-7257.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122501055-4	chr8	122500585	122501585	+	759.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037298, intron 10 of 50)	intron (NM_001037298, intron 10 of 50)	24942.0	NR_152823	66965.0	Mm.482288	NM_153775	ENSMUSG00000049482	Ctu2	2310061F22Rik|C16orf84|Ncs2	cytosolic thiouridylase subunit 2	protein-coding	1.0	0.0	0.0	0.0	0.0	0.5
Merged-chr1-177261639-3	chr1	177261198	177262198	+	759.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-12931.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-11108111-2	chr17	11107611	11108611	+	759.583313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317726, intron 2 of 6)	intron (NM_001317726, intron 2 of 6)	267752.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141860700-4	chr4	141860208	141861208	+	759.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025994, intron 2 of 3)	intron (NM_025994, intron 2 of 3)	14212.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	25.0	37.5	17.5	5.5	19.0	13.5
Merged-chr5-146734255-3	chr5	146733767	146734767	+	759.516663	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011669)	TTS (NM_011669)	60689.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	3.5	14.5	0.5	0.0	0.0	3.0
Merged-chr1-120070265-2	chr1	120069765	120070765	+	759.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019432, intron 1 of 1)	intron (NM_019432, intron 1 of 1)	3515.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69831237-2	chr11	69830737	69831737	+	759.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198862, intron 1 of 6)	intron (NM_198862, intron 1 of 6)	3612.0	NM_198862	216856.0	Mm.151293	NM_198862	ENSMUSG00000051790	Nlgn2	NL2|NLG2	neuroligin 2	protein-coding	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94473563-3	chr10	94473046	94474046	+	759.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-41311.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32281698-3	chr18	32281194	32282194	+	759.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	41363.0	NM_133658	13872.0	Mm.282335	NM_133658	ENSMUSG00000024382	Ercc3	BTF2 p89|Ercc-3|XPB	excision repair cross-complementing rodent repair deficiency, complementation group 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115624248-2	chr6	115623748	115624748	+	759.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029780, intron 10 of 16)	intron (NM_029780, intron 10 of 16)	22310.0	NM_023290	67027.0	Mm.101316	NM_023290	ENSMUSG00000000439	Mkrn2	2610002L04Rik|C81377	makorin, ring finger protein, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-89532641-2	chr4	89532141	89533141	+	759.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-155557.0	NM_175647	242523.0	Mm.130167	NM_175647	ENSMUSG00000043753	Dmrta1	Dmrt4	doublesex and mab-3 related transcription factor like family A1	protein-coding	0.5	1.0	0.0	0.0	0.0	0.5
Merged-chr17-56035767-2	chr17	56035267	56036267	+	759.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357649, intron 1 of 10)	intron (NM_001357649, intron 1 of 10)	870.0	NM_013664	20405.0	Mm.1773	NM_013664	ENSMUSG00000003200	Sh3gl1	C77078|EEN|SH3P8|Sh3d2b	SH3-domain GRB2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147431006-2	chr4	147430506	147431506	+	759.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	MamRep1151|LTR?|LTR?	-122271.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-123651858-2	chr7	123651358	123652358	+	759.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-151232.0	NM_001081329	210162.0	Mm.135397	NM_175435	ENSMUSG00000030757	Zkscan2	9430065N20Rik|AW493225|Zfp694	zinc finger with KRAB and SCAN domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65140976-2	chr9	65140476	65141476	+	759.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008988)	promoter-TSS (NM_008988)	-178.0	NM_008988	19289.0	Mm.41529	NM_008988	ENSMUSG00000032394	Igdcc3	2810401C09Rik|AI851425|Punc|WI-14920	immunoglobulin superfamily, DCC subclass, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-87442114-2	chr12	87441614	87442614	+	759.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001013372)	TTS (NM_001013372)	1725.0	NM_001102565	211064.0	Mm.486235	NM_001102565	ENSMUSG00000079036	Alkbh1	2700073G19Rik|Abh|Alkbh|alkB|hABH	alkB homolog 1, histone H2A dioxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30869439-2	chr7	30868939	30869939	+	759.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001043317, intron 11 of 15)	intron (NM_001043317, intron 11 of 15)	-7969.0	NM_194057	233081.0	Mm.425422	NM_194057	ENSMUSG00000044453	Ffar1	Gpr40	free fatty acid receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-53473004-2	chr16	53472504	53473504	+	759.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-657260.0	NR_040495	73820.0	Mm.60493	NR_040495		4930404A05Rik	-	RIKEN cDNA 4930404A05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-79483154-2	chr14	79482654	79483654	+	759.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 1 of 8)	B1F|SINE|Alu	-1886.0	NM_018765	22380.0	Mm.476813	NM_018765	ENSMUSG00000022023	Wbp4	AW545037|BB101031|FBP21	WW domain binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69553436-2	chr11	69552936	69553936	+	759.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007911)	TTS (NM_007911)	-4328.0	NM_001081330	327954.0	Mm.247478	NM_177617	ENSMUSG00000005237	Dnah2	2900022L05Rik|4930564A01|D130094J20|D330014H01Rik|Dnahc2|Dnhd3	dynein, axonemal, heavy chain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-75194219-2	chr1	75193719	75194719	+	759.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026187, exon 2 of 13)	exon (NM_026187, exon 2 of 13)	2059.0	NR_051998	52231.0	Mm.259326	NM_026187	ENSMUSG00000026199	Ankzf1	1300008P06Rik|2810025E10Rik|D1Ertd161e	ankyrin repeat and zinc finger domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135485461-2	chr5	135484961	135485961	+	759.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	59661.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66308859-2	chr7	66308359	66309359	+	759.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_146191, exon 7 of 34)	exon (NM_146191, exon 7 of 34)	72865.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55723970-2	chr19	55723439	55724439	+	759.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	-17871.0	NM_001331147	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	7.0	0.0	2.0	0.0	0.5
Merged-chr4-107315175-1	chr4	107314675	107315675	+	759.5	f0_c57.idr	intron (NM_001205156, intron 1 of 8)	L1MEc|LINE|L1	812.0	NM_001205156	230584.0	Mm.29118	NM_145550	ENSMUSG00000057375	Yipf1	C030002N13Rik	Yip1 domain family, member 1	protein-coding	16.0	32.5	25.5	10.0	29.0	16.0
Merged-chr11-69107933-2	chr11	69107433	69108433	+	759.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011065, exon 21 of 23)	exon (NM_011065, exon 21 of 23)	7781.0	NM_001159367	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0.5	0.0	7.0	1.0	2.0	1.5
Merged-chr1-86263638-2	chr1	86263138	86264138	+	759.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030184, intron 23 of 24)	intron (NM_030184, intron 23 of 24)	-39583.0	NM_145222	227327.0	Mm.86467	NM_145222	ENSMUSG00000079445	B3gnt7	C330001H22Rik|beta-3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-125972243-2	chr2	125971743	125972743	+	759.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175154, intron 8 of 9)	ORR1E|LTR|ERVL-MaLR	-62415.0	NM_008008	14178.0	Mm.330557	NM_008008	ENSMUSG00000027208	Fgf7	Kgf	fibroblast growth factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122650960-2	chr5	122650460	122651460	+	759.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001284402, intron 1 of 12)	B1_Mus2|SINE|Alu	536.0	NM_001284402	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4615189-2	chr8	4614689	4615689	+	759.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145591, intron 1 of 3)	ORR1A2|LTR|ERVL-MaLR	2019.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66831533-1	chr9	66831033	66832033	+	759.5	f0_balb.idr	intron (NM_026674, intron 2 of 5)	intron (NM_026674, intron 2 of 5)	3173.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	54.0	103.5	109.0	57.0	107.0	106.0
Merged-chr13-49207075-2	chr13	49206575	49207575	+	759.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026738, intron 2 of 5)	MTC|LTR|ERVL-MaLR	8951.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81506082-2	chr10	81505582	81506582	+	759.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010304, intron 6 of 6)	intron (NM_010304, intron 6 of 6)	-5945.0	NM_010102	13611.0	Mm.33065	NM_010102	ENSMUSG00000044199	S1pr4	Edg6|Lpc1|S1p4	sphingosine-1-phosphate receptor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70785518-2	chr9	70785018	70786018	+	759.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	106536.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58558312-2	chr9	58557812	58558812	+	759.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17372.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33524688-2	chr17	33524188	33525188	+	759.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001329147, intron 1 of 22)	intron (NM_001329147, intron 1 of 22)	603.0	NM_001329147	224697.0	Mm.29304	NM_172619	ENSMUSG00000024299	Adamts10	9430006O18|AW045948|Adam-ts10|Adamts-10|Znmp	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10	protein-coding	0.0	1.0	4.5	5.5	0.0	1.5
Merged-chr10-21908160-7	chr10	21907656	21908656	+	759.464294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 1 of 13)	intron (NM_001161845, intron 1 of 13)	25972.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29828992-4	chr6	29828515	29829515	+	759.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	intron (NM_001171000, intron 1 of 16)	-24726.0	NM_001347084	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-20865319-3	chr5	20864863	20865863	+	759.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172992, intron 1 of 17)	intron (NM_172992, intron 1 of 17)	16761.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-34095921-3	chr16	34095411	34096411	+	759.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 34 of 59)	intron (NM_177357, intron 34 of 59)	-128873.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-91260150-3	chr15	91259647	91260647	+	759.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR78|LTR|ERV1	-68140.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109203273-3	chr4	109202724	109203724	+	759.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133885)	promoter-TSS (NM_133885)	-952.0	NM_001346502	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0.5	12.0	10.5	1.0	7.0	5.0
Merged-chr7-75587706-3	chr7	75587196	75588196	+	759.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 5 of 36)	intron (NM_029332, intron 5 of 36)	132162.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.0	5.5	0.0	0.0	4.5	0.0
Merged-chr13-55067436-4	chr13	55066983	55067983	+	759.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_121592, intron 6 of 13)	L1M2|LINE|L1	26923.0	NM_001359757	20184.0	Mm.259301	NM_011307	ENSMUSG00000025878	Uimc1	9430016E08Rik|D330018D10Rik|D630032M02Rik|RIP110|Rxrip110	ubiquitin interaction motif containing 1	protein-coding	0.0	3.0	1.5	1.5	5.5	3.0
Merged-chr8-117107671-2	chr8	117107171	117108171	+	759.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_021486, intron 3 of 10)	intron (NM_021486, intron 3 of 10)	11806.0	NM_001163028	63857.0	Mm.174133	NM_021486	ENSMUSG00000031845	Bco1	Bcdo|Bcdo1|Bcmo1|CMO1|Cmoi|beta-CD|betaCMOOX	beta-carotene oxygenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58233902-3	chr9	58233390	58234390	+	759.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008884, intron 3 of 7)	intron (NM_008884, intron 3 of 7)	12740.0	NR_105806	102466639.0		NR_105806	ENSMUSG00000098886	Mir6385	Gm28021|mmu-mir-6385	microRNA 6385	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94190029-2	chr8	94189529	94190529	+	759.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10940.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-10034017-2	chr2	10033517	10034517	+	759.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027748, intron 2 of 6)	intron (NM_027748, intron 2 of 6)	14592.0	NM_027748	209361.0	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-70197071-2	chr10	70196571	70197571	+	759.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER30|DNA|hAT-Charlie	-7593.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11803610-3	chr19	11803107	11804107	+	759.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	15796.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	36.5	49.5	46.0	26.0	69.5	32.0
Merged-chr5-64537492-3	chr5	64536905	64537905	+	759.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60397.0	NR_045413	77382.0	Mm.366742	NR_045411	ENSMUSG00000105352	C030018K13Rik	-	RIKEN cDNA C030018K13 gene	ncRNA	0.0	3.5	2.5	0.0	1.0	3.5
Merged-chr10-111570800-1	chr10	111570300	111571300	+	759.333313	f0_balb.idr	Intergenic	Intergenic	23473.0	NR_045344	71321.0	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97672320-3	chr15	97671807	97672807	+	759.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33515.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-18924633-2	chr8	18924149	18925149	+	759.333313	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	26222.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	1.0	8.0	4.5	0.0	6.5	0.0
Merged-chr5-120130365-3	chr5	120129872	120130872	+	759.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028762, intron 11 of 23)	ORR1D1|LTR|ERVL-MaLR	8891.0	NR_045793	100503427.0	Mm.446834	NR_045793	ENSMUSG00000097368	Gm10390	-	predicted gene 10390	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91606818-3	chr12	91606326	91607326	+	759.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16339.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165960042-4	chr2	165959598	165960598	+	759.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32539.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	13.0	10.5	6.0	9.0	17.0	18.0
Merged-chr11-103002424-2	chr11	103001924	103002924	+	759.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_026551, intron 1 of 4)	RCHARR1|DNA|hAT-Charlie	-2503.0	NR_105896	102466988.0		NR_105896	ENSMUSG00000098613	Mir6931	Gm27303|mmu-mir-6931	microRNA 6931	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84536045-3	chr18	84535540	84536540	+	759.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 3 of 8)	intron (NM_001033341, intron 3 of 8)	53464.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163858705-3	chr2	163858208	163859208	+	759.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001030292, exon 2 of 2)	exon (NM_001030292, exon 2 of 2)	4958.0	NM_001030292	241769.0	Mm.295337	NM_001030292	ENSMUSG00000035238	Kcnk15	KCNK11|KCNK14|KT3.3|TASK5	potassium channel, subfamily K, member 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34233945-4	chr5	34233445	34234445	+	759.270874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 4 of 12)	intron (NM_001015039, intron 4 of 12)	-46235.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122509820-2	chr5	122509320	122510320	+	759.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7595.0	NR_027838	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-56980213-4	chr1	56979707	56980707	+	759.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358580)	promoter-TSS (NM_001358580)	41.0	NM_001358580	212712.0	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80057792-4	chr10	80057291	80058291	+	759.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183426, exon 32 of 32)	exon (NM_183426, exon 32 of 32)	3772.0	NM_001037741	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17589132-4	chr17	17588624	17589624	+	759.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	L1MEf|LINE|L1	35365.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-117769282-2	chr12	117768782	117769782	+	759.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74579.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-76179021-3	chr5	76178432	76179432	+	759.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4948.0	NM_011626	21982.0	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180333291-2	chr1	180332791	180333791	+	759.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081175, exon 2 of 8)	exon (NM_001081175, exon 2 of 8)	-2742.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90211618-2	chr9	90211143	90212143	+	759.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 10 of 12)	URR1B|DNA|hAT-Charlie	48665.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	17.0	0.0	6.5	10.5	0.0	3.0
Merged-chr10-118093950-3	chr10	118093435	118094435	+	759.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47852.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	31.0	67.5	40.5	13.5	15.5	26.5
Merged-chr2-165288663-3	chr2	165288181	165289181	+	759.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252574)	promoter-TSS (NM_001252574)	-843.0	NR_045544	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-56896145-3	chr8	56895648	56896648	+	759.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	345014.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	9.5	0.0	3.0	0.0	0.0	3.5
Merged-chr2-93199713-4	chr2	93199204	93200204	+	759.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025246, intron 7 of 7)	intron (NM_001025246, intron 7 of 7)	12156.0	NM_001025246	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66568027-4	chr15	66567530	66568530	+	759.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6984.0	NM_172514	213068.0	Mm.132299	NM_172514	ENSMUSG00000036944	Tmem71	AI661017|E430024D12	transmembrane protein 71	protein-coding	6.5	16.0	7.0	4.0	15.0	11.0
Merged-chr9-56209044-4	chr9	56208564	56209564	+	759.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172924, intron 6 of 6)	L1MA5|LINE|L1	-47994.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122639704-3	chr5	122639216	122640216	+	759.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4195.0	NM_001038839	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	0.5	6.5	2.0	0.5	7.0	0.5
Merged-chr18-5139132-3	chr18	5138624	5139624	+	759.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26607.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92413185-3	chr16	92412688	92413688	+	759.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-13110.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-101653038-3	chr2	101652533	101653533	+	759.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3501.0	NM_009019	19373.0	Mm.828	NM_009019	ENSMUSG00000061311	Rag1	Rag-1	recombination activating gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-68219157-2	chr18	68218660	68219660	+	759.166626	f0_balb.idr|f0_c57.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-8786.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	3.5	10.0	6.0	4.0	10.0	6.0
Merged-chr7-27244228-2	chr7	27243728	27244728	+	759.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133770, intron 10 of 14)	intron (NM_133770, intron 10 of 14)	11215.0	NM_133770	76889.0	Mm.124728	NM_133770	ENSMUSG00000003762	Coq8b	0610012P18Rik|Adck4	coenzyme Q8B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8797910-2	chr19	8797410	8798410	+	759.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026329, intron 2 of 7)	B1_Mus1|SINE|Alu	647.0	NM_026329	67710.0	Mm.22117	NM_026329	ENSMUSG00000071662	Polr2g	2410046K11Rik|A230108L04Rik|C76415|RBP7|Rpo2-7l	polymerase (RNA) II (DNA directed) polypeptide G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99485762-3	chr10	99485276	99486276	+	759.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123395.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-89994090-3	chr16	89993573	89994573	+	759.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-19374.0	NM_001145886	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12232590-2	chr15	12232090	12233090	+	759.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356498, intron 2 of 15)	intron (NM_001356498, intron 2 of 15)	27562.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17307552-3	chr6	17307056	17308056	+	759.0888669999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243064)	promoter-TSS (NM_001243064)	-84.0	NM_001243064	12389.0	Mm.28278	NM_007616	ENSMUSG00000007655	Cav1	Cav|Cav-1	caveolin 1, caveolae protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41738503-4	chr4	41738001	41739001	+	759.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001286551)	TTS (NM_001286551)	2858.0	NM_001286540	18391.0	Mm.425181	NM_011014	ENSMUSG00000036078	Sigmar1	Oprs1|Sig1R|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46384503-6	chr17	46384029	46385029	+	759.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021346, intron 1 of 7)	intron (NM_021346, intron 1 of 7)	763.0	NM_021346	57908.0	Mm.439916	NM_021346	ENSMUSG00000015597	Zfp318	2610034E08Rik|D530032D06Rik|TZF|Znf318	zinc finger protein 318	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59843001-4	chr13	59842496	59843496	+	759.075012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	-19849.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	1.0	0.0	0.0	0.0	0.0	2.0
Merged-chr17-40824721-3	chr17	40824200	40825200	+	759.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011269, intron 1 of 9)	Lx8|LINE|L1	13551.0	NM_011269	19743.0	Mm.12961	NM_011269	ENSMUSG00000023926	Rhag	CD241|Rh50|Rh50A	Rhesus blood group-associated A glycoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76237586-3	chr14	76237087	76238087	+	759.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13875.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	1.5	0.0	0.0	1.5	0.0	0.0
Merged-chr11-69350991-2	chr11	69350491	69351491	+	759.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146019, intron 27 of 39)	intron (NM_146019, intron 27 of 39)	10222.0	NR_027827	80515.0	Mm.5324	NM_020591	ENSMUSG00000043419	Chd3os	2310043C11Rik|A030009H04Rik|AA589459|AB041807|MNCb-2875|RNF21	chromodomain helicase DNA binding protein 3, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-26492537-1	chr11	26492037	26493037	+	759.0	f1_c57bl6.idr	intron (NM_027260, intron 8 of 12)	B3|SINE|B2	101383.0	NM_027260	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	2.0	11.5	1.0	6.5	2.5	0.5
Merged-chr1-184020709-1	chr1	184020209	184021209	+	759.0	f0_balb.idr	Intergenic	Intergenic	13289.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	4.5	13.5	16.0	22.0	17.0	30.0
Merged-chr5-125277649-2	chr5	125277149	125278149	+	759.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001205082, exon 12 of 12)	3' UTR (NM_001205082, exon 12 of 12)	63445.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86991449-2	chr11	86990949	86991949	+	759.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005341, intron 1 of 4)	MER112|DNA|hAT-Charlie	2313.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-68048529-1	chr14	68048029	68049029	+	759.0	f0_balb.idr	Intergenic	Intergenic	-35334.0	NM_010910	18039.0	Mm.1956	NM_010910	ENSMUSG00000022055	Nefl	AI847934|CMT2E|NF-L|NF68|Nfl	neurofilament, light polypeptide	protein-coding	5.5	11.0	8.5	0.0	3.5	3.5
Merged-chr15-75755474-2	chr15	75754974	75755974	+	759.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172121, intron 11 of 11)	intron (NM_172121, intron 11 of 11)	-7552.0	NM_194350	378435.0	Mm.309589	NM_194350	ENSMUSG00000047591	Mafa	RIPE3b1	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94945412-1	chr11	94944912	94945912	+	759.0	f1_c57bl6.idr	exon (NM_007742, exon 30 of 51)	exon (NM_007742, exon 30 of 51)	9188.0	NM_007742	12842.0	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	4.0	0.0	4.0	3.5	0.0	0.5
Merged-chr3-51187283-2	chr3	51186783	51187783	+	759.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-37164.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	14.0	5.5	2.0	2.0	1.5	0.0
Merged-chr4-119612392-2	chr4	119611892	119612892	+	759.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357177, intron 6 of 12)	intron (NM_001357177, intron 6 of 12)	-25340.0	NM_008190	14915.0	Mm.2614	NM_008190	ENSMUSG00000023247	Guca2a	Guca2	guanylate cyclase activator 2a (guanylin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39718355-2	chr18	39717971	39718971	+	759.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55026.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0.0	7.5	1.5	0.0	2.0	1.0
Merged-chr10-128080743-2	chr10	128080243	128081243	+	759.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2564.0	NM_016774	11947.0	Mm.238973	NM_016774	ENSMUSG00000025393	Atp5b	Atp5f1b	ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128283025-1	chr8	128282525	128283525	+	759.0	f0_balb.idr	Intergenic	Intergenic	-4800.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0.0	1.0	0.0	0.5	0.0	0.0
Merged-chr17-34314285-1	chr17	34313785	34314785	+	759.0	f1_c57bl6.idr	exon (NM_010382, exon 3 of 6)	exon (NM_010382, exon 3 of 6)	8418.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	18.5	22.5	14.5	3.0	7.5	0.5
Merged-chr4-123019148-3	chr4	123018641	123019641	+	759.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151450, intron 1 of 9)	Lx8|LINE|L1	2548.0	NR_151450	66966.0	Mm.235030	NM_025873	ENSMUSG00000028653	Trit1	2310075G14Rik|AI314189|AI314635|AV099619|IPPT|IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116333492-1	chr11	116332992	116333992	+	759.0	f1_balb.idr	intron (NM_008240, intron 2 of 2)	intron (NM_008240, intron 2 of 2)	1862.0	NM_008240	15223.0	Mm.378938	NM_008240	ENSMUSG00000034227	Foxj1	FKHL-13|HFH-4|Hfh4	forkhead box J1	protein-coding	1.5	0.0	0.5	0.0	0.0	0.0
Merged-chr11-118145349-2	chr11	118144849	118145849	+	759.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-16130.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29970361-1	chr17	29969861	29970861	+	759.0	f1_balb.idr	Intergenic	Intergenic	-34678.0	NM_148926	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0.0	6.5	2.0	0.0	6.5	2.0
Merged-chr9-35588327-2	chr9	35587827	35588827	+	759.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18258.0	NM_029762	76832.0	Mm.482285	NM_029762	ENSMUSG00000050555	Hyls1	3010015K02Rik	HYLS1, centriolar and ciliogenesis associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45597244-2	chr4	45596744	45597744	+	759.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger5|DNA|TcMar-Tigger	-42692.0	NR_151513	100040557.0	Mm.383510	NR_151513	ENSMUSG00000085980	Gm12408	-	predicted gene 12408	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22009159-2	chr8	22008659	22009659	+	759.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007511, intron 12 of 20)	ORR1A2|LTR|ERVL-MaLR	38563.0	NM_026459	67929.0	Mm.60688	NM_026459	ENSMUSG00000017049	Ccdc70	1700112P19Rik	coiled-coil domain containing 70	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-93607911-2	chr3	93607411	93608411	+	759.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44775.0	NM_001007222	399673.0	Mm.377260	NM_001007222	ENSMUSG00000103362	Tdpoz2	-	TD and POZ domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113611766-2	chr5	113611266	113612266	+	759.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001359060)	TTS (NM_001359060)	31837.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-18832493-2	chr15	18831993	18832993	+	759.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009865, intron 1 of 11)	intron (NM_009865, intron 1 of 11)	12164.0	NM_009865	320873.0	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-41084939-2	chr3	41084439	41085439	+	759.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1893.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101563207-3	chr7	101562711	101563711	+	759.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-2346.0	NR_033804	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	40.0	69.0	78.0	10.5	29.0	11.5
Merged-chr2-113397275-1	chr2	113396775	113397775	+	759.0	f1_balb.idr	intron (NM_001285458, intron 2 of 16)	intron (NM_001285458, intron 2 of 16)	-43789.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.5	4.5	3.5	8.5	17.0	13.5
Merged-chr5-30668868-2	chr5	30668368	30669368	+	759.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007681, intron 1 of 4)	B3|SINE|B2	1982.0	NR_126074	12615.0	Mm.290563	NM_007681	ENSMUSG00000029177	Cenpa	Cenp-A	centromere protein A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119823827-2	chr8	119823327	119824327	+	759.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	B4|SINE|B4	16752.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142751789-2	chr5	142751289	142752289	+	759.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122730, intron 15 of 27)	intron (NM_001122730, intron 15 of 27)	49688.0	NM_146257	243328.0	Mm.125942	NM_146257	ENSMUSG00000050822	Slc29a4	ENT4|mPMAT	solute carrier family 29 (nucleoside transporters), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34974087-2	chr17	34973587	34974587	+	759.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013558, intron 1 of 1)	intron (NM_013558, intron 1 of 1)	1384.0	NM_013558	15482.0	Mm.14287	NM_013558	ENSMUSG00000007033	Hspa1l	Hsc70t|Msh5	heat shock protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191349802-2	chr1	191349302	191350302	+	759.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_025864, exon 8 of 8)	exon (NM_025864, exon 8 of 8)	23837.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111509521-2	chr10	111509021	111510021	+	759.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009344)	TTS (NM_009344)	3235.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89392536-2	chr3	89392036	89393036	+	759.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355211)	promoter-TSS (NM_001355211)	-467.0	NM_001355211	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62523579-2	chr4	62523079	62524079	+	759.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_021498)	TTS (NM_021498)	1435.0	NM_021498	59001.0	Mm.27444	NM_021498	ENSMUSG00000028394	Pole3	1810034K18Rik|YBL1	polymerase (DNA directed), epsilon 3 (p17 subunit)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70470653-2	chr12	70470153	70471153	+	759.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_037248, intron 2 of 4)	(CA)n|Simple_repeat|Simple_repeat	17499.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	2.5	3.0	2.5	8.0	8.0	5.5
Merged-chr3-108962916-2	chr3	108962416	108963416	+	759.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	22359.0	NM_001078646	66715.0	Mm.158124	NM_025723	ENSMUSG00000045662	Henmt1	4921515J06Rik|Hen1|mHEN1	HEN1 methyltransferase homolog 1 (Arabidopsis)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-7374703-2	chr7	7374197	7375197	+	759.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	24930.0	NM_001105062	100042591.0	Mm.469891	NM_001105062	ENSMUSG00000096373	Vmn2r31	-	vomeronasal 2, receptor 31	protein-coding	2.5	1.5	1.5	0.0	1.5	1.0
Merged-chr6-31213200-6	chr6	31212853	31213853	+	759.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	intron (NR_110469, intron 1 of 3)	5121.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149770796-2	chr4	149770302	149771302	+	759.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027460, intron 1 of 6)	intron (NM_027460, intron 1 of 6)	3465.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	3.5	27.0	11.5	10.0	19.0	3.0
Merged-chr2-117114624-1	chr2	117114124	117115124	+	759.0	f0_balb.idr	Intergenic	Intergenic	-6447.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-33951513-3	chr13	33951021	33952021	+	759.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040707, intron 1 of 4)	intron (NR_040707, intron 1 of 4)	-13138.0	NM_001163239	18105.0	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	N-ribosyldihydronicotinamide quinone reductase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5443618-2	chr11	5443118	5444118	+	759.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080924, intron 1 of 8)	intron (NM_001080924, intron 1 of 8)	1229.0	NM_001080924	407821.0	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4208948-2	chr7	4208448	4209448	+	759.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28806.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101986566-2	chr11	101986070	101987070	+	759.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029287)	promoter-TSS (NM_029287)	-486.0	NM_029287	75437.0	Mm.108632	NM_029287	ENSMUSG00000010841	1700006E09Rik	Cfap97d1	RIKEN cDNA 1700006E09 gene	protein-coding	0.0	1.0	1.0	1.0	0.0	2.0
Merged-chr15-88870566-2	chr15	88870066	88871066	+	759.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8372.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105564433-2	chr8	105563933	105564933	+	759.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013477, intron 1 of 7)	intron (NM_013477, intron 1 of 7)	1631.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-186554268-1	chr1	186553768	186554768	+	759.0	f0_balb.idr	intron (NR_131124, intron 1 of 2)	MTE2a|LTR|ERVL-MaLR	4413.0	NR_131124	320449.0	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126928142-2	chr7	126927642	126928642	+	759.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172747)	promoter-TSS (NM_172747)	-737.0	NM_172747	233877.0	Mm.245897	NM_172747	ENSMUSG00000030685	Kctd13	1500003N18Rik|AV259508|PDIP1alpha|Pdip1|Poldip1	potassium channel tetramerisation domain containing 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61907353-4	chr8	61906844	61907844	+	758.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4650.0	NM_001293772	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98717659-3	chr7	98717161	98718161	+	758.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028410, exon 5 of 5)	3' UTR (NM_028410, exon 5 of 5)	14414.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88549774-2	chr17	88549297	88550297	+	758.916626	f1_balb.idr|f1_c57bl6.idr	exon (NM_028658, exon 6 of 22)	exon (NM_028658, exon 6 of 22)	19673.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	3.0	27.0	12.5	0.5	20.0	7.5
Merged-chr17-31994807-3	chr17	31994309	31995309	+	758.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028902, intron 6 of 7)	intron (NM_028902, intron 6 of 7)	39699.0	NM_028902	74377.0	Mm.75856	NM_028902	ENSMUSG00000002076	Hsf2bp	4932437G14Rik	heat shock transcription factor 2 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54229016-2	chr6	54228516	54229516	+	758.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 6 of 12)	intron (NM_001163640, intron 6 of 12)	-35842.0	NM_001311133	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80621126-4	chr17	80620594	80621594	+	758.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290345, intron 16 of 33)	ID_B1|SINE|B4	-43281.0	NM_001360144	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24676269-5	chr17	24675580	24676580	+	758.866638	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348231, intron 1 of 11)	intron (NM_001348231, intron 1 of 11)	6393.0	NM_183149	213753.0	Mm.219581	NM_183149	ENSMUSG00000041130	Zfp598	BC023040|Ntrap|Znf598	zinc finger protein 598	protein-coding	8.0	0.0	1.0	7.5	0.0	1.5
Merged-chr7-25301176-2	chr7	25300676	25301676	+	758.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081294)	promoter-TSS (NM_001081294)	-183.0	NM_001081294	623131.0	Mm.172160	NM_001081294	ENSMUSG00000058741	Prr19	EG623131	proline rich 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123037081-2	chr8	123036581	123037581	+	758.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	5203.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	18.0	7.0	6.0	20.0	11.0	5.5
Merged-chr19-4927471-2	chr19	4926971	4927971	+	758.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133803, intron 1 of 17)	intron (NM_133803, intron 1 of 17)	499.0	NM_001360711	75221.0	Mm.234769	NM_133803	ENSMUSG00000063904	Dpp3	4930533O14Rik|C86324|DPP III	dipeptidylpeptidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20683170-2	chr18	20682670	20683670	+	758.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-17910.0	NR_155534	102633478.0		NR_155534	ENSMUSG00000085595	Gm16090	-	predicted gene 16090	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81336297-2	chr7	81335797	81336797	+	758.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8937.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112586061-2	chr12	112585561	112586561	+	758.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2723.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-58543130-2	chr6	58542630	58543630	+	758.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41846.0	NM_001355477	26357.0	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132586331-2	chr4	132585831	132586831	+	758.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22264.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	3.5	0.5	1.5	4.5	3.0	0.5
Merged-chr12-69373914-3	chr12	69373407	69374407	+	758.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007481, exon 2 of 2)	3' UTR (NM_007481, exon 2 of 2)	1757.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	13.5	33.5	14.5	10.0	32.0	12.5
Merged-chr8-126789168-4	chr8	126788666	126789666	+	758.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59854.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	6.5	1.5	1.0	4.0	2.5
Merged-chr5-150441782-3	chr5	150441204	150442204	+	758.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172887, intron 46 of 60)	intron (NM_172887, intron 46 of 60)	60515.0	NR_024513	194292.0	Mm.300184	NR_024513		Gm5	Gm1812	predicted gene 5	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-50036836-4	chr18	50036343	50037343	+	758.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360935, intron 1 of 1)	intron (NM_001360935, intron 1 of 1)	5859.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	79.0	59.0	56.0	55.0	77.5	67.0
Merged-chr14-55101895-4	chr14	55101386	55102386	+	758.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007455, intron 14 of 21)	intron (NM_007455, intron 14 of 21)	4707.0	NM_001303502	11766.0	Mm.238879	NM_007455	ENSMUSG00000040701	Ap1g2	Adtg2|G2ad	adaptor protein complex AP-1, gamma 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-23085829-1	chr19	23085329	23086329	+	758.799988	f0_c57.idr	Intergenic	Intergenic	-55397.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	1.5	6.5	2.0	0.0	0.0	0.0
Merged-chr1-171002585-2	chr1	171002085	171003085	+	758.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR21|LTR|ERVK	-16341.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78348852-2	chr11	78348352	78349352	+	758.799988	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011676, exon 5 of 5)	3' UTR (NM_011676, exon 5 of 5)	2142.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61575321-4	chr8	61574847	61575847	+	758.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	15822.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	17.5	37.0	26.5	26.5	16.0	29.0
Merged-chr1-185331522-3	chr1	185331035	185332035	+	758.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011794)	promoter-TSS (NM_011794)	-624.0	NM_011794	23827.0	Mm.227549	NM_011794	ENSMUSG00000026617	Bpnt1	BPntase	bisphosphate 3'-nucleotidase 1	protein-coding	57.0	172.0	69.5	69.5	151.0	72.5
Merged-chr3-133111891-3	chr3	133111411	133112411	+	758.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027927)	TTS (NM_027927)	-19872.0	NM_001356309	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-27085682-3	chr8	27085157	27086157	+	758.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054044)	promoter-TSS (NM_054044)	-184.0	NM_054044	78560.0	Mm.87046	NM_054044	ENSMUSG00000031486	Adgra2	8430414O08Rik|9530074E10Rik|Gpr124|Tem5|mKIAA1531	adhesion G protein-coupled receptor A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-30024769-5	chr11	30024297	30025297	+	758.776184	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_146016, exon 2 of 42)	5' UTR (NM_146016, exon 2 of 42)	1236.0	NM_146016	237711.0	Mm.445271	NM_146016	ENSMUSG00000044072	Eml6	2900083P10Rik|C230094A16Rik|EMAP-6	echinoderm microtubule associated protein like 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-85002216-3	chr10	85001709	85002709	+	758.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183172, intron 9 of 9)	intron (NM_183172, intron 9 of 9)	84596.0	NM_183172	237422.0	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	4.0	6.5	0.0	0.5	1.0	0.5
Merged-chr18-10052727-2	chr18	10052227	10053227	+	758.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	-22578.0	NM_021522	59025.0	Mm.329277	NM_021522	ENSMUSG00000047879	Usp14	2610005K12Rik|2610037B11Rik|AW107924|C78769|ax|nmf375	ubiquitin specific peptidase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-130280249-2	chr10	130279749	130280749	+	758.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007501)	promoter-TSS (NM_007501)	5.0	NM_001329490	11923.0	Mm.10695	NM_007501	ENSMUSG00000048015	Neurod4	AI846749|ATH-3|Atoh3|MATH-3|Math3|bHLHa4	neurogenic differentiation 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54088350-4	chr6	54087851	54088851	+	758.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	48419.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	6.0	8.5	7.0	11.5	5.5	9.5
Merged-chr5-4186992-4	chr5	4186483	4187483	+	758.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5384.0	NM_001042670	208595.0	Mm.129815	NM_001042670	ENSMUSG00000053178	Mterf1b	Gm9897	mitochondrial transcription termination factor 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134121628-2	chr6	134121249	134122249	+	758.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	86049.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	12.5	25.0	6.5	24.5	9.5	14.5
Merged-chr4-109670405-2	chr4	109669905	109670905	+	758.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3649.0	NM_001301368	12580.0	Mm.1912	NM_007671	ENSMUSG00000028551	Cdkn2c	C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c	cyclin dependent kinase inhibitor 2C	protein-coding	2.0	1.5	4.5	0.0	3.5	7.5
Merged-chr5-86917531-2	chr5	86917031	86918031	+	758.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_152811, exon 6 of 6)	3' UTR (NM_152811, exon 6 of 6)	8972.0	NM_152811	71773.0	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	0.0	0.0	1.0	2.5	0.0	2.0
Merged-chr9-123814932-2	chr9	123814432	123815432	+	758.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110253, intron 14 of 17)	intron (NM_001110253, intron 14 of 17)	8455.0	NM_030712	80901.0	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59910554-3	chr10	59910075	59911075	+	758.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	30984.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-76978157-3	chr18	76977659	76978659	+	758.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33775.0	NM_001361227	76987.0	Mm.236127	NM_029826	ENSMUSG00000025421	Hdhd2	0610039H12Rik|3110052N05Rik	haloacid dehalogenase-like hydrolase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77798849-3	chr15	77798359	77799359	+	758.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 3 of 40)	intron (NM_022410, intron 3 of 40)	-41849.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43140139-4	chr17	43139628	43140628	+	758.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18163.0	NR_045155	545207.0	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	0.0	1.5	0.0	0.0	0.5	0.0
Merged-chr6-56485292-3	chr6	56484787	56485787	+	758.700012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115653.0	NM_001159955	18575.0	Mm.5145	NM_011054	ENSMUSG00000004347	Pde1c	-	phosphodiesterase 1C	protein-coding	2.5	2.0	3.0	0.5	0.0	1.5
Merged-chr11-101550950-2	chr11	101550450	101551450	+	758.6999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_009764, intron 1 of 22)	B1_Mur1|SINE|Alu	1005.0	NM_009764	12189.0	Mm.244975	NM_009764	ENSMUSG00000017146	Brca1	-	breast cancer 1, early onset	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-76337293-4	chr5	76336791	76337791	+	758.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019515, intron 8 of 9)	intron (NM_019515, intron 8 of 9)	6053.0	NR_152115	74621.0	Mm.444687	NR_152115		4930432L08Rik	-	RIKEN cDNA 4930432L08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75756327-3	chr11	75755803	75756803	+	758.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009536, intron 3 of 5)	intron (NM_009536, intron 3 of 5)	23416.0	NM_009536	22627.0	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	0.0	0.0	1.0	0.0	0.0	0.5
Merged-chr16-93767116-3	chr16	93766616	93767616	+	758.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357118, intron 17 of 35)	intron (NM_001357118, intron 17 of 35)	27785.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160175256-3	chr2	160174755	160175755	+	758.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	152239.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121342907-3	chr11	121342409	121343409	+	758.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025793, intron 2 of 9)	intron (NM_025793, intron 2 of 9)	11538.0	NM_025793	66840.0	Mm.103986	NM_025793	ENSMUSG00000025173	Wdr45b	0610008N23Rik|AA408735|D16Bwg0193e|WIPI-3|Wdr45l	WD repeat domain 45B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-76672609-3	chr2	76672056	76673056	+	758.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355080, intron 1 of 4)	intron (NM_001355080, intron 1 of 4)	542.0	NM_001355079	14231.0	Mm.24720	NM_010222	ENSMUSG00000002732	Fkbp7	23kDa|FKBP-7|FKBP23	FK506 binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69670414-4	chr3	69669869	69670869	+	758.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11D|LTR|ERVK	-51686.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	66.5	121.5	130.5	63.5	111.5	132.0
Merged-chr14-78731588-3	chr14	78731173	78732173	+	758.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081336, intron 1 of 29)	intron (NM_001081336, intron 1 of 29)	1056.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-25396927-2	chr5	25396427	25397427	+	758.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081383, intron 6 of 58)	Lx3B|LINE|L1	101856.0	NM_001081383	231051.0	Mm.332268	NM_001081383	ENSMUSG00000038056	Kmt2c	E330008K23Rik|HALR|Mll3|mKIAA1506	lysine (K)-specific methyltransferase 2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115705716-4	chr11	115705222	115706222	+	758.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008163, intron 1 of 5)	RMER15|LTR|ERVL	2875.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95235825-2	chr8	95235325	95236325	+	758.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70760.0	NM_145601	333329.0	Mm.484049	NM_145601	ENSMUSG00000031789	Cngb1	Cngb1b|Garp2|Gm1959	cyclic nucleotide gated channel beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9991867-2	chr19	9991363	9992363	+	758.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011913, intron 5 of 11)	MIR|SINE|MIR	9217.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.0	2.5	8.0	0.5	7.0	2.0
Merged-chr13-81134573-4	chr13	81134067	81135067	+	758.645813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	RMER10A|LTR|ERVL	170493.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-126513388-3	chr10	126512869	126513869	+	758.633362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	197022.0	NR_105841	102465224.0		NR_105841	ENSMUSG00000098756	Mir378d	Gm27650|mmu-mir-378d	microRNA 378d	ncRNA	3.5	1.5	2.5	16.0	27.5	17.0
Merged-chr3-37348541-4	chr3	37348068	37349068	+	758.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008006)	promoter-TSS (NM_008006)	-85.0	NM_008006	14173.0	Mm.473689	NM_008006	ENSMUSG00000037225	Fgf2	Fgf-2|Fgfb|bFGF	fibroblast growth factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-121734264-3	chr7	121733787	121734787	+	758.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011326)	promoter-TSS (NM_011326)	-192.0	NM_011326	20278.0	Mm.35247	NM_011326	ENSMUSG00000000216	Scnn1g	SCNEG	sodium channel, nonvoltage-gated 1 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35377174-1	chr8	35376674	35377674	+	758.5	f1_c57bl6.idr	intron (NM_177741, intron 1 of 1)	intron (NM_177741, intron 1 of 1)	1433.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	102.5	202.0	159.5	108.0	160.5	119.0
Merged-chr8-56296103-2	chr8	56295603	56296603	+	758.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008278, intron 2 of 6)	intron (NM_008278, intron 2 of 6)	1551.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84615940-2	chr12	84615440	84616440	+	758.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008992, intron 1 of 18)	B1_Mur3|SINE|Alu	1526.0	NM_008992	19300.0	Mm.229109	NM_008992	ENSMUSG00000021240	Abcd4	P69r|P70R|Pxmp1l	ATP-binding cassette, sub-family D (ALD), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118806089-2	chr9	118805609	118806609	+	758.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 3 of 13)	L2a|LINE|L2	94417.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	21.0	22.0	18.0	13.0	35.0	1.5
Merged-chr17-36273825-2	chr17	36273325	36274325	+	758.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-1821.0	NM_024468	79263.0	Mm.40624	NM_024468	ENSMUSG00000045409	Trim39	1100001D15Rik|E130103K13Rik|RBCC-B30.2|Rnf23|mKIAA4179|tfp	tripartite motif-containing 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65519744-2	chr9	65519244	65520244	+	758.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57043.0	NM_001357813	27965.0	Mm.272475	NM_138584	ENSMUSG00000032388	Spg21	ACP33|BM-019|C78576|D9Wsu18e|GL010|MAST	SPG21, maspardin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28329832-2	chr17	28329332	28330332	+	758.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357628, intron 4 of 5)	intron (NM_001357628, intron 4 of 5)	1267.0	NM_001357628	19896.0	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121579810-2	chr8	121579310	121580310	+	758.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1004.0	NM_133765	76454.0	Mm.24829	NM_133765	ENSMUSG00000052934	Fbxo31	1110003O08Rik|2310046N15Rik|Fbx14|Fbxo14	F-box protein 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-47439560-3	chr11	47439038	47440038	+	758.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60236.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19675193-2	chr7	19674693	19675693	+	758.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001309799, intron 1 of 3)	(TTCA)n|Simple_repeat|Simple_repeat	-1273.0	NM_001309795	11813.0	Mm.28394	NM_001277944	ENSMUSG00000002992	Apoc2	apo-CII|apoC-II	apolipoprotein C-II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113646024-2	chr6	113645524	113646524	+	758.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 1 of 11)	intron (NM_001113553, intron 1 of 11)	7557.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112990916-2	chr12	112990416	112991416	+	758.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028193, intron 2 of 17)	G-rich|Low_complexity|Low_complexity	9705.0	NM_028193	72308.0	Mm.196721	NM_028193	ENSMUSG00000011158	Brf1	2510002F24Rik|GTF3B|TAF3C|TAFIII90|TFIIIB90|mTFIIIB90	BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180904900-4	chr1	180904410	180905410	+	758.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133705, intron 2 of 6)	intron (NM_133705, intron 2 of 6)	636.0	NM_133705	69051.0	Mm.274180	NM_133705	ENSMUSG00000026520	Pycr2	1810018M05Rik|P5cr2	pyrroline-5-carboxylate reductase family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72724790-2	chr6	72724290	72725290	+	758.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001079822, intron 3 of 12)	intron (NM_001079822, intron 3 of 12)	64255.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132534058-2	chr4	132533558	132534558	+	758.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007512, intron 1 of 3)	intron (NM_007512, intron 1 of 3)	1356.0	NM_007512	11983.0	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	5.0	11.0	2.5	1.5	18.0	7.5
Merged-chr11-78164793-2	chr11	78164293	78165293	+	758.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009423, intron 1 of 6)	MIR|SINE|MIR	757.0	NM_009423	22032.0	Mm.390418	NM_009423	ENSMUSG00000017386	Traf4	A530032M13Rik|CART1|msp2	TNF receptor associated factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-144580694-2	chr7	144580194	144581194	+	758.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010175, exon 2 of 2)	exon (NM_010175, exon 2 of 2)	1742.0	NM_010175	14082.0	Mm.5126	NM_010175	ENSMUSG00000031077	Fadd	Mort1/FADD	Fas (TNFRSF6)-associated via death domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121628191-2	chr10	121627691	121628691	+	758.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-1859.0	NM_001359618	73192.0	Mm.25042	NM_001081056	ENSMUSG00000034667	Xpot	1110004L07Rik|3110065H13Rik|AI452076|C79645|EXPORTIN-T	exportin, tRNA (nuclear export receptor for tRNAs)	protein-coding	12.0	5.0	11.5	3.0	0.5	0.0
Merged-chr6-29498094-2	chr6	29497594	29498594	+	758.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029985, intron 13 of 37)	intron (NM_001029985, intron 13 of 37)	9858.0	NM_001029985	333088.0	Mm.332961	NM_001029985	ENSMUSG00000059022	Kcp	AW060220|CRIM-2|Crim2|Gm793|KCP-1	kielin/chordin-like protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43615885-2	chr13	43615385	43616385	+	758.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183204)	promoter-TSS (NM_183204)	88.0	NM_183204	328234.0	Mm.40588	NM_183204	ENSMUSG00000044164	Rnf182	C630023L15Rik	ring finger protein 182	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8648551-4	chr4	8647979	8648979	+	758.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41927.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-39831389-4	chr5	39830878	39831878	+	758.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-186747.0	NM_010474	15476.0	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120476768-2	chr14	120476268	120477268	+	758.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1693.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32743862-2	chr5	32743362	32744362	+	758.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347332, intron 2 of 8)	intron (NM_001347332, intron 2 of 8)	2480.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	13.5	7.5	2.5	4.0	2.5	4.5
Merged-chr13-85834325-2	chr13	85833825	85834825	+	758.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	212470.0	NM_007749	12867.0	Mm.378898	NM_007749	ENSMUSG00000017778	Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding	0.0	0.0	0.0	0.0	3.0	0.0
Merged-chr8-104143702-2	chr8	104143202	104144202	+	758.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009868, exon 12 of 12)	3' UTR (NM_009868, exon 12 of 12)	-26811.0	NM_001141924	65115.0	Mm.41849	NM_001141922	ENSMUSG00000031872	Bean1	Bean	brain expressed, associated with Nedd4, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44343681-2	chr19	44343178	44344178	+	758.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183216, intron 5 of 5)	intron (NM_183216, intron 5 of 5)	10352.0	NM_183216	329065.0	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	15.0	32.0	20.0	4.5	20.5	16.0
Merged-chr18-37751666-2	chr18	37751173	37752173	+	758.5	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_033579)	promoter-TSS (NM_033579)	-106.0	NM_033579	93704.0	Mm.247203	NM_033579	ENSMUSG00000104063	Pcdhgb7	-	protocadherin gamma subfamily B, 7	protein-coding	3.0	0.0	9.0	2.0	0.0	3.5
Merged-chr7-118438972-2	chr7	118438472	118439472	+	758.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362179, intron 3 of 7)	intron (NM_001362179, intron 3 of 7)	4588.0	NM_001362180	110058.0	Mm.156558	NM_138649	ENSMUSG00000058420	Syt17	Bk|sytXVII	synaptotagmin XVII	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88591146-2	chr1	88590646	88591646	+	758.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39629.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19768263-2	chr7	19767763	19768763	+	758.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020486, intron 2 of 14)	intron (NM_020486, intron 2 of 14)	2269.0	NM_020486	57278.0	Mm.29236	NM_020486	ENSMUSG00000002980	Bcam	1200005K12Rik|B-CAM|Gplu|Lu	basal cell adhesion molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32239516-2	chr18	32239016	32240016	+	758.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133658)	promoter-TSS (NM_133658)	-815.0	NM_133658	13872.0	Mm.282335	NM_133658	ENSMUSG00000024382	Ercc3	BTF2 p89|Ercc-3|XPB	excision repair cross-complementing rodent repair deficiency, complementation group 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171561937-3	chr1	171561423	171562423	+	758.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018729, intron 1 of 8)	intron (NM_018729, intron 1 of 8)	2730.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	9.0	11.0	4.5	3.0	6.5	8.5
Merged-chr18-46417064-2	chr18	46416564	46417564	+	758.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48752.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78918611-2	chr17	78918110	78919110	+	758.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001024806)	TTS (NM_001024806)	2111.0	NM_001177402	68554.0	Mm.391820	NM_001177402	ENSMUSG00000062691	Cebpzos	1110001A16Rik	CCAAT/enhancer binding protein (C/EBP), zeta, opposite strand	protein-coding	15.0	33.0	5.5	6.0	20.5	23.0
Merged-chr2-32625270-2	chr2	32624770	32625770	+	758.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198791)	promoter-TSS (NM_001198791)	-167.0	NM_001198791	11636.0	Mm.29189	NM_021515	ENSMUSG00000026817	Ak1	Ak-1|B430205N08Rik	adenylate kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-60443941-1	chr14	60443441	60444441	+	758.5	f0_balb.idr	Intergenic	RMER4A|LTR|ERVK	65655.0	NM_001164705	72125.0	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	40.5	93.0	63.5	25.0	60.5	75.0
Merged-chr7-100269088-2	chr7	100268588	100269588	+	758.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027629, intron 12 of 13)	intron (NM_027629, intron 12 of 13)	4544.0	NR_033563	14777.0	Mm.57225	NR_033563		Gpx2-ps1	AU041318	glutathione peroxidase 2, pseudogene 1	pseudo	0.0	4.0	0.5	0.0	0.0	0.5
Merged-chr9-118593388-2	chr9	118592888	118593888	+	758.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13321.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5656959-2	chr17	5656459	5657459	+	758.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 2 of 8)	intron (NM_146073, intron 2 of 8)	-141698.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-23815339-3	chr10	23814836	23815836	+	758.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183116, intron 6 of 13)	intron (NM_183116, intron 6 of 13)	18350.0	NM_001358812	76306.0	Mm.294271	NM_183116	ENSMUSG00000037455	Slc18b1	1110021L09Rik	solute carrier family 18, subfamily B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124075736-3	chr5	124075242	124076242	+	758.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019875, intron 9 of 11)	intron (NM_019875, intron 9 of 11)	20056.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35597998-3	chr18	35597448	35598448	+	758.43335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357472)	promoter-TSS (NM_001357472)	-669.0	NM_001357470	67869.0	Mm.126534	NM_026420	ENSMUSG00000037058	Paip2	2310050K10Rik|AU045972	polyadenylate-binding protein-interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-69985956-4	chr7	69985481	69986481	+	758.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	351841.0	NR_131145	624549.0	Mm.116344	NR_131144	ENSMUSG00000109097	Gm29683	Gm44536	predicted gene, 29683	ncRNA	0.0	14.5	2.0	3.0	13.0	6.5
Merged-chr1-84251006-4	chr1	84250514	84251514	+	758.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003948, intron 1 of 2)	intron (NM_001003948, intron 1 of 2)	-32053.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-77436276-6	chr8	77435725	77436725	+	758.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 3 of 22)	intron (NM_030113, intron 3 of 22)	-80831.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-102722486-4	chr13	102721954	102722954	+	758.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	28896.0	NM_008533	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	1.5	0.0	7.5	1.5	0.0	7.5
Merged-chr16-95732414-6	chr16	95731936	95732936	+	758.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30029.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-59208695-3	chr19	59208184	59209184	+	758.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10964.0	NM_207261	332396.0	Mm.329947	NM_207261	ENSMUSG00000040901	Kcnk18	Gm781|Tresk|Tresk-2|Trik	potassium channel, subfamily K, member 18	protein-coding	0.0	0.5	4.5	3.5	2.0	9.0
Merged-chr17-70683957-3	chr17	70683470	70684470	+	758.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360665, intron 9 of 14)	intron (NM_001360665, intron 9 of 14)	122223.0	NM_001128181	224997.0	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	DLG associated protein 1	protein-coding	12.5	1.0	9.0	0.0	2.0	4.0
Merged-chr7-68144483-3	chr7	68143972	68144972	+	758.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	119761.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-87299862-4	chr12	87299447	87300447	+	758.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290302)	promoter-TSS (NM_001290302)	-242.0	NM_001290302	217738.0	Mm.219363	NM_001290302	ENSMUSG00000050671	Ism2	Gm264|Thsd3	isthmin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-131277249-3	chr6	131276744	131277744	+	758.361145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	16000.0	NM_001327860	66441.0	Mm.46623	NM_025564	ENSMUSG00000030188	Magohb	2010012C16Rik|Mago|Magoh|Magoh-rs1	mago homolog B, exon junction complex core component	protein-coding	48.0	65.0	61.5	45.0	51.5	52.0
Merged-chr19-5691146-2	chr19	5690616	5691616	+	758.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_022012, intron 3 of 11)	intron (NM_022012, intron 3 of 11)	1985.0	NM_022012	26403.0	Mm.185026	NM_022012	ENSMUSG00000004054	Map3k11	2610017K16Rik|Mlk3|PTK1|SPRK	mitogen-activated protein kinase kinase kinase 11	protein-coding	14.0	37.5	13.0	7.5	39.0	11.0
Merged-chr11-108283018-2	chr11	108282518	108283518	+	758.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	MIR|SINE|MIR	60870.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	5.0	0.0	1.5	0.0	0.0	0.0
Merged-chr2-4605294-2	chr2	4604794	4605794	+	758.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 10 of 11)	intron (NM_001177844, intron 10 of 11)	45540.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74235333-2	chr1	74234833	74235833	+	758.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-1184.0	NM_001357387	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108766682-2	chr8	108766182	108767182	+	758.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	52038.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.0	2.0	2.0	0.0	2.0	7.0
Merged-chr8-47940613-3	chr8	47940099	47941099	+	758.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133791, intron 1 of 22)	intron (NM_133791, intron 1 of 22)	49952.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110841052-3	chr9	110840536	110841536	+	758.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153172, exon 6 of 6)	exon (NM_153172, exon 6 of 6)	-3470.0	NM_183103	74306.0	Mm.87419	NM_183103	ENSMUSG00000049719	Prss46	1700112C13Rik|79H19B|Tessp6	protease, serine 46	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr13-41619715-3	chr13	41619209	41620209	+	758.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163572, intron 1 of 2)	intron (NM_001163572, intron 1 of 2)	13493.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48285807-1	chr17	48285307	48286307	+	758.333313	f0_c57.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-14231.0	NM_001033405	328833.0	Mm.329104	NM_001033405	ENSMUSG00000071068	Treml2	AW049306|Gm750|Tlt2	triggering receptor expressed on myeloid cells-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91092144-1	chr1	91091644	91092644	+	758.333313	f0_balb.idr	intron (NM_008515, intron 9 of 22)	intron (NM_008515, intron 9 of 22)	38700.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132803722-3	chr7	132803216	132804216	+	758.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	9480.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48407376-2	chr17	48406896	48407896	+	758.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110832, intron 1 of 9)	intron (NM_001110832, intron 1 of 9)	2424.0	NM_001110832	18044.0	Mm.4929	NM_010913	ENSMUSG00000023994	Nfya	AA407810|Cbf-b|SEZ-10|SEZ10	nuclear transcription factor-Y alpha	protein-coding	3.5	4.0	0.0	6.0	15.5	3.5
Merged-chr12-41033498-3	chr12	41033004	41034004	+	758.311096	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 2 of 6)	MLT1F|LTR|ERVL-MaLR	9414.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62183850-4	chr18	62183342	62184342	+	758.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013754, intron 1 of 1)	intron (NM_001013754, intron 1 of 1)	3742.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	4.0	42.5	13.5	15.0	23.5	18.0
Merged-chr1-165706387-4	chr1	165705930	165706930	+	758.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	1664.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130276056-2	chr2	130275619	130276619	+	758.25	f1_balb.idr|f1_c57bl6.idr	TTS (NR_028547)	TTS (NR_028547)	604.0	NR_028547	100217452.0		NR_028547	ENSMUSG00000080610	Snord110	MBII-55	small nucleolar RNA, C/D box 110	snoRNA	7.5	7.5	8.0	12.0	3.0	11.0
Merged-chr2-167297523-2	chr2	167297023	167298023	+	758.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019835)	TTS (NM_019835)	51655.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-37049538-3	chr8	37049031	37050031	+	758.244446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4A|LTR|ERVK	-25293.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	6.5	7.5	9.5	3.0	3.5	3.0
Merged-chr2-117936747-3	chr2	117936229	117937229	+	758.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	114801.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	10.5	10.5	6.0	13.0	21.5	17.5
Merged-chr10-99428526-4	chr10	99428002	99429002	+	758.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	165271.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38436500-3	chr18	38435997	38436997	+	758.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	L1M4|LINE|L1	17590.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42437030-3	chr10	42436516	42437516	+	758.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359297, intron 2 of 11)	intron (NM_001359297, intron 2 of 11)	41549.0	NM_001359297	215951.0	Mm.89646	NM_145743	ENSMUSG00000038302	Afg1l	CG8520|Lace1	AFG1 like ATPase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11559023-2	chr8	11558523	11559523	+	758.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302459, intron 1 of 1)	intron (NM_001302459, intron 1 of 1)	613.0	NM_001302459	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-60805074-3	chr19	60804561	60805561	+	758.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-6494.0	NM_001360619	67894.0	Mm.26148	NM_026437	ENSMUSG00000024993	Fam45a	1810055E12Rik	family with sequence similarity 45, member A	protein-coding	9.0	21.0	3.5	1.5	2.0	0.5
Merged-chr3-8987225-3	chr3	8986727	8987727	+	758.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	MER57-int|LTR|ERV1	16977.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	37.5	93.5	49.0	39.0	63.0	39.0
Merged-chr11-101449156-3	chr11	101448646	101449646	+	758.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027320, intron 1 of 6)	RLTR12E|LTR|ERVK	734.0	NM_027320	70110.0	Mm.45558	NM_027320	ENSMUSG00000010358	Ifi35	2010008K16Rik|AW986054|IFP35|ifi-35	interferon-induced protein 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132301314-2	chr7	132300814	132301814	+	758.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029935, intron 1 of 7)	intron (NM_029935, intron 1 of 7)	-14350.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32544950-2	chr17	32544450	32545450	+	758.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_024442, exon 7 of 13)	exon (NM_024442, exon 7 of 13)	8393.0	NM_001356303	70101.0	Mm.30504	NM_024442	ENSMUSG00000048440	Cyp4f16	2310021J05Rik|AI746515	cytochrome P450, family 4, subfamily f, polypeptide 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-74991412-4	chr9	74990943	74991943	+	758.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153584, intron 1 of 11)	Lx10|LINE|L1	15332.0	NM_153584	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	4.5	20.5	12.0	4.5	9.5	5.5
Merged-chr12-16896282-4	chr12	16895778	16896778	+	758.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009072, intron 1 of 32)	intron (NM_009072, intron 1 of 32)	1300.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	1.0	15.0	6.0	5.5	16.5	13.0
Merged-chr8-41100532-3	chr8	41100022	41101022	+	758.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 1 of 13)	MTC|LTR|ERVL-MaLR	14145.0	NM_001286413	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	3.5	2.0	15.0	0.0	4.0	5.0
Merged-chr11-80174340-6	chr11	80173818	80174818	+	758.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 8 of 10)	intron (NM_172133, intron 8 of 10)	-9554.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	10.5	36.0	34.5	9.5	38.5	33.5
Merged-chr3-89953627-3	chr3	89953144	89954144	+	758.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081182, intron 11 of 27)	intron (NM_001081182, intron 11 of 27)	9688.0	NM_001081182	54667.0	Mm.30455	NM_001081182	ENSMUSG00000060671	Atp8b2	Id	ATPase, class I, type 8B, member 2	protein-coding	0.5	16.0	3.5	0.0	11.0	0.5
Merged-chr8-22139877-3	chr8	22139393	22140393	+	758.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011848, intron 11 of 15)	intron (NM_011848, intron 11 of 15)	-14826.0	NM_001347318	330721.0	Mm.113940	NM_177898	ENSMUSG00000037738	Nek5	6530411J22|BB049667	NIMA (never in mitosis gene a)-related expressed kinase 5	protein-coding	0.0	0.0	0.5	22.0	25.5	26.5
Merged-chr8-70697834-2	chr8	70697334	70698334	+	758.099976	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010592)	promoter-TSS (NM_010592)	95.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	71.5	183.5	78.5	87.0	131.5	64.0
Merged-chr19-17136975-5	chr19	17136448	17137448	+	758.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181348, intron 9 of 19)	intron (NM_181348, intron 9 of 19)	180830.0	NM_181348	353211.0	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	0.0	1.0	0.0	4.0	5.0	2.5
Merged-chr1-120467528-3	chr1	120467026	120468026	+	758.0888669999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37498.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	5.5	0.0	2.0	5.5	2.0	2.0
Merged-chr11-87690388-4	chr11	87689876	87690876	+	758.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172448, intron 2 of 9)	intron (NM_172448, intron 2 of 9)	-9148.0	NR_045139	68690.0	Mm.342009	NR_045139		1110028F11Rik	-	RIKEN cDNA 1110028F11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-68905324-3	chr18	68904849	68905849	+	758.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038051, intron 3 of 6)	intron (NR_038051, intron 3 of 6)	46179.0	NR_038051	78931.0	Mm.160155	NR_038051		4930546C10Rik	-	RIKEN cDNA 4930546C10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163699662-4	chr2	163699158	163700158	+	758.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011106, intron 1 of 3)	intron (NM_011106, intron 1 of 3)	5621.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27857756-4	chr17	27857246	27858246	+	758.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080769, intron 1 of 20)	intron (NM_001080769, intron 1 of 20)	1239.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	34.0	86.0	36.5	29.0	72.0	39.0
Merged-chr13-107873345-3	chr13	107872856	107873856	+	758.011108	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	16708.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21347314-2	chr19	21346814	21347814	+	758.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	75036.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12330454-2	chr15	12329954	12330954	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025673, intron 1 of 3)	B1_Mm|SINE|Alu	8958.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81547302-2	chr10	81546802	81547802	+	758.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-2256.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-39754123-2	chr14	39753623	39754623	+	758.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	98460.0	NR_045936	73591.0	Mm.65499	NR_045936	ENSMUSG00000101261	1700109I08Rik	-	RIKEN cDNA 1700109I08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37855542-3	chr13	37855050	37856050	+	758.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	28157.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-83303158-2	chr4	83302658	83303658	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 1 of 19)	intron (NM_027238, intron 1 of 19)	21031.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	1.5	2.0	1.5	6.5	4.0	8.0
Merged-chr6-96116835-3	chr6	96116382	96117382	+	758.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182808, intron 2 of 4)	intron (NM_182808, intron 2 of 4)	3728.0	NM_182808	320265.0	Mm.489890	NM_182808	ENSMUSG00000059187	Fam19a1	C630007B19Rik|FAM19A1 TAFA-1|TAFA1|Tafa-1	family with sequence similarity 19, member A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124019908-2	chr8	124019408	124020408	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133966, intron 1 of 4)	MIR|SINE|MIR	1148.0	NM_001357315	102162.0	Mm.291777	NM_133966	ENSMUSG00000038697	Taf5l	1110005N04Rik|AI849020	TATA-box binding protein associated factor 5 like	protein-coding	2.0	15.0	11.0	10.5	17.0	7.5
Merged-chr16-78218339-2	chr16	78217839	78218839	+	758.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37115.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91769025-2	chr12	91768525	91769525	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	17411.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85105516-1	chr1	85105016	85106016	+	758.0	f1_balb.idr	intron (NM_213615, intron 1 of 6)	B3A|SINE|B2	4337.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80560012-2	chr17	80559512	80560512	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360144, intron 2 of 9)	intron (NM_001360144, intron 2 of 9)	3822.0	NM_001033443	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117119042-2	chr2	117118542	117119542	+	758.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2029.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94344856-2	chr11	94344356	94345356	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 30 of 30)	intron (NM_029600, intron 30 of 30)	16855.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-38131449-1	chr7	38130949	38131949	+	758.0	f1_balb.idr	Intergenic	Intergenic	-23959.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	6.0	0.0	1.0	0.0	0.0	2.0
Merged-chr13-97187233-2	chr13	97186733	97187733	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010422, intron 5 of 13)	L1MC4|LINE|L1	11124.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66805627-2	chr14	66805140	66806140	+	758.0	f0_balb.idr|f0_c57.idr	intron (NM_009955, intron 13 of 13)	intron (NM_009955, intron 13 of 13)	62960.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-38654297-2	chr10	38653797	38654797	+	758.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	167482.0	NM_001177783	215919.0	Mm.294313	NM_001177783	ENSMUSG00000094311	Rfpl4b	100040915|Gm3037|Gm62	ret finger protein-like 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120517273-2	chr11	120516773	120517773	+	758.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13454.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11599126-2	chr2	11598626	11599626	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_152824, intron 2 of 11)	B1_Mus2|SINE|Alu	4073.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95417326-1	chr4	95416826	95417826	+	758.0	f0_c57.idr	Intergenic	Intergenic	-140181.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84178612-2	chr12	84178112	84179112	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	15403.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142400368-3	chr5	142399898	142400898	+	758.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1099.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-103234229-4	chr9	103233728	103234728	+	758.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3942.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116527203-2	chr7	116526703	116527703	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360375, intron 7 of 14)	intron (NM_001360375, intron 7 of 14)	22834.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22840752-2	chr11	22840242	22841242	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001169114, intron 1 of 1)	B3|SINE|B2	18993.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.0	1.0	0.0	2.5	2.5	2.5
Merged-chr8-80982840-1	chr8	80982340	80983340	+	758.0	f1_c57bl6.idr	intron (NM_027554, intron 9 of 9)	intron (NM_027554, intron 9 of 9)	32066.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	11.5	45.0	13.0	19.0	11.0	11.5
Merged-chr12-112941192-2	chr12	112940692	112941692	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316724, intron 1 of 4)	intron (NM_001316724, intron 1 of 4)	950.0	NM_025399	66174.0	Mm.7070	NM_025399	ENSMUSG00000002804	Nudt14	1110030M18Rik|UGPPase	nudix (nucleoside diphosphate linked moiety X)-type motif 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-113824100-4	chr2	113823609	113824609	+	758.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009162, intron 2 of 5)	intron (NM_009162, intron 2 of 5)	4982.0	NM_009162	20394.0	Mm.4836	NM_009162	ENSMUSG00000023236	Scg5	7B2|AI325031|Sgne-1|Sgne1	secretogranin V	protein-coding	1.0	1.0	2.0	2.5	0.0	0.0
Merged-chr18-69421536-3	chr18	69421066	69422066	+	758.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	75406.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6130142-3	chr2	6129619	6130619	+	758.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159657)	promoter-TSS (NM_001159657)	66.0	NM_144883	227545.0	Mm.133542	NM_144883	ENSMUSG00000045319	Proser2	5430407P10Rik|AU067770	proline and serine rich 2	protein-coding	0.0	1.5	1.0	0.0	0.0	0.0
Merged-chr9-64697455-2	chr9	64696955	64697955	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134399, intron 21 of 24)	intron (NM_001134399, intron 21 of 24)	40301.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132606103-2	chr7	132605603	132606603	+	758.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4540.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184844987-6	chr1	184844457	184845457	+	758.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133684, intron 1 of 7)	intron (NM_133684, intron 1 of 7)	890.0	NM_133684	67247.0	Mm.177724	NM_133684	ENSMUSG00000073481	Marc2	2810484M10Rik|Mosc2|mARC1	mitochondrial amidoxime reducing component 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4298977-2	chr19	4298477	4299477	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	7245.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31169782-2	chr14	31169282	31170282	+	758.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	-1141.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55078021-1	chr11	55077521	55078521	+	758.0	f0_balb.idr	exon (NM_177471, exon 1 of 7)	exon (NM_177471, exon 1 of 7)	110.0	NM_177471	52570.0	Mm.22361	NM_177471	ENSMUSG00000049588	Ccdc69	2210021E03Rik|D11Ertd461e	coiled-coil domain containing 69	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75077959-2	chr8	75077459	75078459	+	758.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15659.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8845355-1	chr17	8844855	8845855	+	758.0	f1_balb.idr	intron (NM_011866, intron 1 of 21)	intron (NM_011866, intron 1 of 21)	-4630.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	8.0	0.5	7.5	7.5	2.5	7.0
Merged-chr11-106701873-2	chr11	106701373	106702373	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 2 of 14)	RMER13A|LTR|ERVK	13408.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-81653170-2	chr17	81652670	81653670	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	85217.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105947288-2	chr1	105946788	105947788	+	758.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42994.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	0.0	0.0	7.5	0.0	0.0	0.5
Merged-chr6-129094617-2	chr6	129094117	129095117	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153506, intron 3 of 4)	intron (NM_153506, intron 3 of 4)	6286.0	NM_153506	232409.0	Mm.30870	NM_153506	ENSMUSG00000030155	Clec2e	Clra|clr-a	C-type lectin domain family 2, member e	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr17-73301907-2	chr17	73301407	73302407	+	758.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97389.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171120785-2	chr1	171120285	171121285	+	758.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081275)	promoter-TSS (NM_001081275)	-876.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91263827-2	chr2	91263327	91264327	+	758.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001289678, exon 10 of 11)	exon (NM_001289678, exon 10 of 11)	-1288.0	NM_001166024	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116684983-2	chr4	116684483	116685483	+	758.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011034)	promoter-TSS (NM_011034)	-616.0	NM_011034	18477.0	Mm.30929	NM_011034	ENSMUSG00000028691	Prdx1	MSP23|NkefA|OSF-3|OSF3|PAG|Paga|PrdxI|PrxI|TDX2|TPxA|Tdpx2|prx1	peroxiredoxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-123337803-2	chr7	123337303	123338303	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	32112.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5494873-3	chr17	5494417	5495417	+	758.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	2317.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38666650-3	chr15	38666153	38667153	+	758.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025494, intron 1 of 12)	intron (NM_025494, intron 1 of 12)	4749.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-105238462-1	chr10	105237962	105238962	+	758.0	f1_balb.idr	intron (NM_177368, intron 11 of 11)	LSU-rRNA_Hsa|rRNA|rRNA	336017.0	NM_177368	278279.0	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	11.5	0.0	0.0	0.0	0.0	2.0
Merged-chr15-51871171-2	chr15	51870671	51871671	+	758.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-5710.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90703315-2	chr2	90702815	90703815	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021512, intron 17 of 36)	B3A|SINE|B2	26100.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79965893-2	chr10	79965393	79966393	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175450, intron 4 of 9)	intron (NM_175450, intron 4 of 9)	-4831.0	NM_130455	170483.0	Mm.391566	NM_130455	ENSMUSG00000035745	Grin3b	GluN3B|NR3B	glutamate receptor, ionotropic, NMDA3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166994765-2	chr2	166994265	166995265	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109905, intron 1 of 11)	intron (NM_001109905, intron 1 of 11)	1534.0	NM_011490	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118766893-2	chr14	118766393	118767393	+	758.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20978.0	NM_001160098	58187.0	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83399941-3	chr7	83399445	83400445	+	758.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-184986.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50402768-3	chr15	50402280	50403280	+	758.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	486269.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0.0	2.5	2.0	0.0	0.0	0.5
Merged-chr8-83596032-1	chr8	83595532	83596532	+	758.0	f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-1541.0	NM_134118	106529.0	Mm.352239	NM_027179	ENSMUSG00000031708	Tecr	2410016D23Rik|A230102P12Rik|AI173355|D17Ertd178e|Gpsn2|SC2	trans-2,3-enoyl-CoA reductase	protein-coding	15.0	9.0	20.5	0.5	17.5	7.0
Merged-chr7-48938413-3	chr7	48937913	48938913	+	758.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-20660.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25834641-2	chr17	25834141	25835141	+	758.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_144816, exon 8 of 8)	3' UTR (NM_144816, exon 8 of 8)	-1280.0	NM_019719	56424.0	Mm.277599	NM_019719	ENSMUSG00000039615	Stub1	0610033N24Rik|2210017D18Rik|2310040B03Rik|AW046544|Chip	STIP1 homology and U-Box containing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124020545-1	chr8	124020045	124021045	+	758.0	f1_balb.idr	intron (NM_133966, intron 1 of 4)	B1F|SINE|Alu	511.0	NM_001357315	102162.0	Mm.291777	NM_133966	ENSMUSG00000038697	Taf5l	1110005N04Rik|AI849020	TATA-box binding protein associated factor 5 like	protein-coding	14.5	37.0	27.0	1.5	40.0	23.0
Merged-chr18-67450149-3	chr18	67449617	67450617	+	757.983337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027130)	promoter-TSS (NM_027130)	-981.0	NM_027130	69597.0	Mm.426052	NM_027130	ENSMUSG00000024527	Afg3l2	2310036I02Rik|AW260507|Emv66|par	AFG3-like AAA ATPase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-36276858-6	chr2	36276392	36277392	+	757.972229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46466.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-105705975-3	chr12	105705473	105706473	+	757.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030187)	promoter-TSS (NM_030187)	-9.0	NM_030187	78801.0	Mm.36006	NM_030187	ENSMUSG00000041323	Ak7	4930502N02Rik|AK 7	adenylate kinase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34765945-3	chr8	34765448	34766448	+	757.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER34A1|LTR|ERV1	-41662.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	0.5	18.0	1.0	0.0	6.5	3.0
Merged-chr17-57167182-3	chr17	57166680	57167680	+	757.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17403.0	NM_011617	21948.0	Mm.42228	NM_011617	ENSMUSG00000019489	Cd70	CD27LG|Cd27l|Tnfsf7|Tnlg8a	CD70 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-104740532-6	chr2	104740043	104741043	+	757.922241	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144804, intron 1 of 8)	B3|SINE|B2	2258.0	NM_144804	211896.0	Mm.288805	NM_144804	ENSMUSG00000027173	Depdc7	AV216087	DEP domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134047601-4	chr6	134047104	134048104	+	757.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007961, intron 1 of 7)	MTEb|LTR|ERVL-MaLR	11904.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-80032746-2	chr8	80032246	80033246	+	757.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_020259, intron 4 of 12)	intron (NM_020259, intron 4 of 12)	25262.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-74386126-2	chr5	74385600	74386600	+	757.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114660, intron 5 of 8)	intron (NM_001114660, intron 5 of 8)	145642.0	NM_178672	212986.0	Mm.134147	NM_178672	ENSMUSG00000062110	Scfd2	E430013M20Rik|STXBP1L1	Sec1 family domain containing 2	protein-coding	5.5	7.0	17.5	0.0	0.0	2.5
Merged-chr7-113143711-3	chr7	113143210	113144210	+	757.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1695.0	NR_045978	75239.0	Mm.381688	NR_045978	ENSMUSG00000110009	4930543E12Rik	4930545H14Rik	RIKEN cDNA 4930543E12 gene	ncRNA	0.5	7.0	4.5	3.0	2.0	3.0
Merged-chr11-16949012-3	chr11	16948508	16949508	+	757.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110421, intron 2 of 5)	intron (NR_110421, intron 2 of 5)	2274.0	NR_110421	72735.0	Mm.268598	NR_015469		Eldr	2810442I21Rik|4930500E12Rik|Fabl	Egfr long non-coding downstream RNA	ncRNA	1.0	0.0	1.5	1.0	0.0	1.5
Merged-chr17-22353012-3	chr17	22352496	22353496	+	757.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355280, intron 4 of 6)	intron (NM_001355280, intron 4 of 6)	8404.0	NM_176962	319615.0	Mm.442162	NM_176962	ENSMUSG00000033972	Zfp944	6330416L07Rik	zinc finger protein 944	protein-coding	0.0	3.5	2.0	5.0	2.0	3.0
Merged-chr1-149833143-4	chr1	149832649	149833649	+	757.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 17 of 17)	intron (NM_008869, intron 17 of 17)	89290.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102399876-2	chr12	102399376	102400376	+	757.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 10 of 13)	intron (NM_011175, intron 10 of 13)	39937.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-77791367-3	chr12	77790814	77791814	+	757.857178	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	381173.0	NM_001252616	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30969482-4	chr16	30969011	30970011	+	757.854187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 3 of 3)	intron (NM_198626, intron 3 of 3)	111921.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	14.0	4.5	43.5	50.5	32.5	23.0
Merged-chr19-29489776-2	chr19	29489276	29490276	+	757.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32211.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-28538356-2	chr2	28537856	28538856	+	757.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145836, intron 1 of 17)	intron (NM_001145836, intron 1 of 17)	4892.0	NM_001145836	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112273146-2	chr5	112272646	112273646	+	757.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3545.0	NM_001326590	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0.5	2.0	0.0	0.0	10.0	0.5
Merged-chr2-127559395-2	chr2	127558895	127559895	+	757.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17978.0	NM_138750	192212.0	Mm.34171	NM_138750	ENSMUSG00000027376	Prom2	AI507243|Prom-rp	prominin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-77497672-2	chr8	77497172	77498172	+	757.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 1 of 22)	intron (NM_030113, intron 1 of 22)	-19384.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-50052856-3	chr18	50052342	50053342	+	757.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134131)	promoter-TSS (NM_134131)	-440.0	NM_134131	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	34.5	56.0	47.5	30.0	41.0	28.0
Merged-chr3-51718236-3	chr3	51717762	51718762	+	757.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	57083.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44511943-2	chr19	44511436	44512436	+	757.833313	f1_balb.idr|f1_c57bl6.idr	exon (NM_011720, exon 6 of 6)	exon (NM_011720, exon 6 of 6)	18464.0	NM_011720	22423.0	Mm.88365	NM_011720	ENSMUSG00000036961	Wnt8b	-	wingless-type MMTV integration site family, member 8B	protein-coding	7.5	5.5	4.0	0.0	5.0	3.0
Merged-chr11-77368957-3	chr11	77368434	77369434	+	757.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291190, intron 1 of 13)	intron (NM_001291190, intron 1 of 13)	20654.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124768690-4	chr6	124768173	124769173	+	757.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013509, intron 1 of 11)	intron (NM_013509, intron 1 of 11)	1000.0	NM_001302642	13807.0	Mm.3913	NM_013509	ENSMUSG00000004267	Eno2	AI837106|D6Ertd375e|Eno-2|NSE	enolase 2, gamma neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160015132-3	chr2	160014628	160015628	+	757.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1525.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	9.0	0.0	8.5	0.0	2.0	2.5
Merged-chr2-25575552-3	chr2	25575063	25576063	+	757.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029293)	promoter-TSS (NM_029293)	-692.0	NM_029293	75454.0	Mm.458079	NM_029293	ENSMUSG00000036504	Phpt1	1700008C22Rik|PHP|Php14	phosphohistidine phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136051678-3	chr1	136051188	136052188	+	757.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001270609)	TTS (NM_001270609)	884.0	NM_001270609	226439.0	Mm.491831	NM_001270609	ENSMUSG00000097918	Ascl5	Ascl5-ps|Gm197|bHLHa47	achaete-scute family bHLH transcription factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117345327-4	chr8	117344777	117345777	+	757.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-3893.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141440137-2	chr7	141439637	141440637	+	757.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001360523, exon 11 of 16)	exon (NM_001360523, exon 11 of 16)	-2263.0	NM_001360724	68267.0	Mm.33729	NM_026646	ENSMUSG00000019082	Slc25a22	1300006L01Rik|AI060884|Gc1	solute carrier family 25 (mitochondrial carrier, glutamate), member 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-58452460-4	chr10	58451965	58452965	+	757.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011240, intron 2 of 28)	intron (NM_011240, intron 2 of 28)	5613.0	NM_011240	19386.0	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-76673852-4	chr2	76673330	76674330	+	757.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010222)	promoter-TSS (NM_010222)	-732.0	NM_001355080	14231.0	Mm.24720	NM_010222	ENSMUSG00000002732	Fkbp7	23kDa|FKBP-7|FKBP23	FK506 binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145802193-1	chr6	145801693	145802693	+	757.75	f0_balb.idr	Intergenic	Intergenic	-6190.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147487605-2	chr4	147487088	147488088	+	757.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	RLTR1B-int|LTR|ERV1	-65689.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142365853-2	chr5	142365353	142366353	+	757.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35644.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70890871-2	chr11	70890371	70891371	+	757.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291142, intron 4 of 16)	RLTR30D2_MM|LTR|ERV1	46110.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	0.0	0.0	6.0	0.0	0.5	0.5
Merged-chr16-44812689-3	chr16	44812242	44813242	+	757.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7986.0	NM_207244	239849.0	Mm.445045	NM_207244	ENSMUSG00000062082	Cd200r4	F630107N04Rik|MCD200RLa	CD200 receptor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95582285-3	chr9	95581793	95582793	+	757.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22476.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-67112858-3	chr11	67112335	67113335	+	757.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_038055, exon 5 of 5)	non-coding (NR_038055, exon 5 of 5)	7245.0	NR_038055	74184.0	Mm.162554	NR_038055	ENSMUSG00000087410	2310065F04Rik	linc-Myh	RIKEN cDNA 2310065F04 gene	ncRNA	0.0	0.0	2.5	0.0	0.0	2.5
Merged-chr18-74213068-3	chr18	74212560	74213560	+	757.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30E_MM|LTR|ERV1	-3152.0	NM_028868	74322.0	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	27.0	25.0	19.0	29.0	35.0	35.5
Merged-chr4-149783326-4	chr4	149782847	149783847	+	757.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9080.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	31.5	48.0	52.0	24.0	74.0	43.5
Merged-chr11-22991507-2	chr11	22991007	22992007	+	757.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_009837, intron 1 of 13)	intron (NM_009837, intron 1 of 13)	914.0	NM_009837	12464.0	Mm.296985	NM_009837	ENSMUSG00000007739	Cct4	2610204B21Rik|A45|C78323|Cctd	chaperonin containing Tcp1, subunit 4 (delta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144562149-3	chr3	144561659	144562659	+	757.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355234, intron 1 of 6)	L1MA8|LINE|L1	8057.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100613347-3	chr15	100612793	100613793	+	757.666687	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045701)	TTS (NR_045701)	1817.0	NR_045701	78445.0	Mm.44383	NR_045701	ENSMUSG00000097093	C330013E15Rik	-	RIKEN cDNA C330013E15 gene	ncRNA	14.5	30.0	11.0	5.5	25.0	27.0
Merged-chr4-108623855-3	chr4	108623380	108624380	+	757.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177045, intron 3 of 24)	intron (NM_177045, intron 3 of 24)	3924.0	NM_177045	319965.0	Mm.151129	NM_177045	ENSMUSG00000028582	Cc2d1b	A830039B04Rik|Freud2	coiled-coil and C2 domain containing 1B	protein-coding	2.0	0.0	2.5	0.0	9.0	4.5
Merged-chr6-116459405-3	chr6	116458923	116459923	+	757.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009662, intron 1 of 13)	intron (NM_009662, intron 1 of 13)	1755.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34822781-2	chr1	34822281	34823281	+	757.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160236, intron 3 of 6)	intron (NM_001160236, intron 3 of 6)	20269.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65404748-3	chr9	65404202	65405202	+	757.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162923, intron 2 of 4)	intron (NM_001162923, intron 2 of 4)	6214.0	NM_001033158	70784.0	Mm.35827	NM_001033158	ENSMUSG00000041696	Rasl12	4631404I11Rik	RAS-like, family 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56135419-2	chr17	56134919	56135919	+	757.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130456, intron 1 of 16)	intron (NM_001130456, intron 1 of 16)	-1567.0	NM_013662	20359.0	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88698816-4	chr5	88698318	88699318	+	757.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22053.0	NM_026735	68473.0	Mm.35764	NM_026735	ENSMUSG00000006262	Mob1b	1110003E08Rik|AU015450|B230364F10|Mobkl1a	MOB kinase activator 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45306926-4	chr9	45306421	45307421	+	757.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12179.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39419171-2	chr6	39418671	39419671	+	757.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_018810, intron 1 of 7)	intron (NM_018810, intron 1 of 7)	605.0	NM_001311109	54484.0	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-33822655-4	chr5	33822153	33823153	+	757.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20459.0	NM_175231	107823.0	Mm.19892	NM_175231	ENSMUSG00000057406	Nsd2	5830445G22Rik|9430010A17Rik|AW555663|C130020C13Rik|D030027O06Rik|D930023B08Rik|MMSET|Whsc1|Whsc1l|mKIAA1090	nuclear receptor binding SET domain protein 2	protein-coding	2.5	0.5	3.5	2.5	0.5	3.5
Merged-chr19-36538710-3	chr19	36538208	36539208	+	757.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15931.0	NM_001163471	226098.0	Mm.61107	NM_172637	ENSMUSG00000041180	Hectd2	4921524L07|A630025O09Rik|AW212605	HECT domain E3 ubiquitin protein ligase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38065640-6	chr6	38064997	38065997	+	757.597229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080467, intron 14 of 20)	intron (NM_080467, intron 14 of 20)	-18501.0	NM_177200	320590.0	Mm.197449	NM_177200	ENSMUSG00000029830	Svopl	9430071P14Rik	SV2 related protein homolog (rat)-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91929442-2	chr16	91928942	91929942	+	757.583313	f1_balb.idr|f1_c57bl6.idr	intron (NM_138597, intron 2 of 6)	intron (NM_138597, intron 2 of 6)	2188.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110014464-4	chr7	110013967	110014967	+	757.575012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-3784.0	NM_181517	233726.0	Mm.222328	NM_181517	ENSMUSG00000066232	Ipo7	A330055O14Rik|C330016G14|Imp7|Ranbp7	importin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6331220-5	chr19	6330675	6331675	+	757.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3804.0	NM_001168488	17283.0	Mm.12917	NM_008583	ENSMUSG00000024947	Men1	AW045611	multiple endocrine neoplasia 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20293016-2	chr13	20292516	20293516	+	757.56665	f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 13 of 21)	intron (NM_080288, intron 13 of 21)	-179974.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	43.5	23.0	16.5	7.0	19.0	14.0
Merged-chr13-24687534-3	chr13	24687041	24688041	+	757.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080381, intron 8 of 14)	intron (NM_001080381, intron 8 of 14)	48893.0	NM_029679	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-28242189-3	chr5	28241691	28242691	+	757.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310512, intron 1 of 3)	intron (NM_001310512, intron 1 of 3)	3597.0	NM_001310512	269637.0	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101990493-3	chr5	101989992	101990992	+	757.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	79429.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	14.0	52.5	14.0	22.5	32.5	36.5
Merged-chr3-154330351-3	chr3	154329883	154330883	+	757.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040387)	promoter-TSS (NR_040387)	177.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	0.0	1.0	1.5	0.0	0.5	2.0
Merged-chr14-31017294-2	chr14	31016794	31017794	+	757.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_153547, exon 3 of 15)	exon (NM_153547, exon 3 of 15)	-1022.0	NR_028523	100217423.0		NR_028523		Snord19	MBII-108	small nucleolar RNA, C/D box 19	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135965456-2	chr4	135964956	135965956	+	757.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001356493, exon 2 of 11)	exon (NM_001356493, exon 2 of 11)	1731.0	NM_001356493	74246.0	Mm.247946	NM_178389	ENSMUSG00000028671	Gale	2310002A12Rik|AI323962	galactose-4-epimerase, UDP	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60367466-2	chr2	60366966	60367966	+	757.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013825, intron 3 of 34)	MTC|LTR|ERVL-MaLR	15765.0	NM_013825	17076.0	Mm.2074	NM_013825	ENSMUSG00000026980	Ly75	CD205|DEC-205|DEC205	lymphocyte antigen 75	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120150078-2	chr6	120149578	120150578	+	757.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-43745.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125168730-2	chr6	125168230	125169230	+	757.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_146171, exon 31 of 32)	exon (NM_146171, exon 31 of 32)	-2263.0	NM_001289726	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	0.0	3.0	0.0	2.0	2.5	1.0
Merged-chr10-8729648-2	chr10	8729148	8730148	+	757.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_175155, exon 18 of 20)	exon (NM_175155, exon 18 of 20)	156422.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51583856-2	chr3	51583356	51584356	+	757.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23033.0	NM_080793	73251.0	Mm.192111	NM_080793	ENSMUSG00000037111	Setd7	1600028F23Rik|H3K4MT|KMT7|Set7|Set7/9|mKIAA1717	SET domain containing (lysine methyltransferase) 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26245436-2	chr17	26244997	26245997	+	757.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	-1255.0	NM_001206335	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	0.5	21.5	5.5	2.5	10.5	12.5
Merged-chr15-41818953-3	chr15	41818454	41819454	+	757.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 8 of 17)	intron (NR_152565, intron 8 of 17)	-12004.0	NM_001130164	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8593411-2	chr12	8592911	8593911	+	757.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177802, intron 1 of 6)	ERVB4_1-I_MM-int|LTR|ERVK	5655.0	NM_177802	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145248053-2	chr6	145247589	145248589	+	757.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021284, intron 1 of 4)	intron (NM_021284, intron 1 of 4)	2142.0	NM_021284	16653.0	Mm.383182	NM_021284	ENSMUSG00000030265	Kras	AI929937|K-Ras|K-Ras 2|K-ras|Ki-ras|Kras-2|Kras2|c-K-ras|c-Ki-ras|p21B|ras	Kirsten rat sarcoma viral oncogene homolog	protein-coding	10.5	50.0	45.5	13.0	43.0	20.0
Merged-chr5-123066248-2	chr5	123065748	123066748	+	757.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10027.0	NM_001039723	330189.0	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	5.0	1.0	0.0	0.0	0.0	0.0
Merged-chr1-71653117-2	chr1	71652617	71653617	+	757.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040308)	promoter-TSS (NR_040308)	117.0	NM_001276410	14268.0	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75583766-2	chr11	75583266	75584266	+	757.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4313.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99380581-2	chr15	99380081	99381081	+	757.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-10099.0	NM_001310622	22379.0	Mm.29043	NM_011711	ENSMUSG00000023008	Fmnl3	2700073B04Rik|FBP11|Wbp3|mKIAA2014	formin-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-83540814-2	chr9	83540314	83541314	+	757.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7524.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0.0	3.0	9.5	8.5	2.5	7.0
Merged-chr8-88283406-2	chr8	88282906	88283906	+	757.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109756, intron 1 of 27)	intron (NM_001109756, intron 1 of 27)	414.0	NM_001109756	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0.0	0.0	2.5	0.0	0.0	3.0
Merged-chr4-41274643-2	chr4	41274143	41275143	+	757.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026872, intron 1 of 28)	intron (NM_026872, intron 1 of 28)	492.0	NM_026872	68926.0	Mm.41864	NM_026872	ENSMUSG00000028433	Ubap2	1190005K07Rik|AA408600|AU045235|UBAP-2|mKIAA1491	ubiquitin-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32809397-2	chr11	32808897	32809897	+	757.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15197.0	NM_027050	69351.0	Mm.65488	NM_027050	ENSMUSG00000020270	Smim23	1700008A04Rik	small integral membrane protein 23	protein-coding	0.0	1.0	0.0	2.5	0.5	2.0
Merged-chr1-64377333-2	chr1	64376833	64377833	+	757.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-155471.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-144735424-2	chr5	144734924	144735924	+	757.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177735)	TTS (NM_177735)	26154.0	NM_177735	243339.0	Mm.126793	NM_177735	ENSMUSG00000043388	Tmem130	BC067004|C130036G08	transmembrane protein 130	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33910998-2	chr17	33910498	33911498	+	757.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355704, intron 2 of 7)	B1_Mus1|SINE|Alu	1397.0	NM_001199733	13163.0	Mm.271809	NM_007829	ENSMUSG00000002307	Daxx	-	Fas death domain-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116151506-1	chr9	116151006	116152006	+	757.5	f0_balb.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	23857.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	3.5	6.5	8.5	14.0	6.5	8.0
Merged-chr2-165819995-2	chr2	165819495	165820495	+	757.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027230, intron 13 of 23)	intron (NM_027230, intron 13 of 23)	38178.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.0	6.5	1.5	0.0	0.0	0.0
Merged-chr15-28029442-2	chr15	28028942	28029942	+	757.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3594.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105340510-2	chr8	105340010	105341010	+	757.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	7460.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122885475-2	chr8	122884982	122885982	+	757.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 12 of 12)	intron (NM_001081379, intron 12 of 12)	37108.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	1.0	3.0	0.0	0.0	0.0	0.0
Merged-chr17-70745580-2	chr17	70745080	70746080	+	757.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	101197.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.5	5.5	5.0	0.0	0.0	1.5
Merged-chr7-67443966-2	chr7	67443466	67444466	+	757.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71108.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	7.0	23.0	7.0	13.5	13.5	9.0
Merged-chr16-95896117-2	chr16	95895617	95896617	+	757.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040484, intron 1 of 3)	ORR1F|LTR|ERVL-MaLR	2596.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-81325271-2	chr16	81324771	81325771	+	757.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113208, intron 1 of 17)	B3A|SINE|B2	124574.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7832225-5	chr10	7831729	7832729	+	757.483337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172785)	promoter-TSS (NM_172785)	-241.0	NM_172785	237256.0	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	29.0	55.5	38.0	20.5	37.0	25.5
Merged-chr16-90281142-4	chr16	90280653	90281653	+	757.479187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346799, intron 1 of 19)	intron (NM_001346799, intron 1 of 19)	3333.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-52100506-5	chr14	52099824	52100824	+	757.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360183, intron 1 of 8)	MER5A|DNA|hAT-Charlie	3697.0	NM_001360178	15381.0	Mm.427321	NM_016884	ENSMUSG00000060373	Hnrnpc	AL022939|D14Wsu171e|Hnrpc|Hnrpc1|Hnrpc2|hnRNPC1|hnRNPC2|hnrnp-C	heterogeneous nuclear ribonucleoprotein C	protein-coding	45.5	58.5	65.5	47.5	101.5	78.0
Merged-chr15-74896508-4	chr15	74896039	74897039	+	757.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14835.0	NM_025929	67038.0	Mm.154566	NM_025929	ENSMUSG00000063522	2010109I03Rik	Ly6m	RIKEN cDNA 2010109I03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-12140873-4	chr4	12140379	12141379	+	757.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028226, intron 1 of 2)	CpG	762.0	NM_028226	72397.0	Mm.430709	NM_028226	ENSMUSG00000046667	Rbm12b1	3000004N20Rik|Rbm12b|Rbm12ba	RNA binding motif protein 12 B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-58931997-3	chr2	58931500	58932500	+	757.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 10 of 13)	intron (NM_001362394, intron 10 of 13)	176816.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85608274-4	chr12	85607802	85608802	+	757.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030887, exon 2 of 4)	exon (NM_030887, exon 2 of 4)	8284.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-17904587-6	chr14	17904183	17905183	+	757.4365230000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-76961.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	1.5	4.5	4.5	2.5	15.5	2.5
Merged-chr14-73269341-2	chr14	73268841	73269841	+	757.416687	f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 11 of 26)	intron (NM_009029, intron 11 of 26)	31450.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130852326-4	chr5	130851869	130852869	+	757.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	403577.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34341851-2	chr17	34341324	34342324	+	757.416626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033978)	TTS (NM_001033978)	2821.0	NM_010381	100504404.0	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	15.0	28.5	16.0	34.0	95.5	56.5
Merged-chr17-36789035-2	chr17	36788544	36789544	+	757.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	16134.0	NM_177637	224761.0	Mm.246584	NM_177637	ENSMUSG00000037246	H2-M10.5	6.9H	histocompatibility 2, M region locus 10.5	protein-coding	1.0	0.0	1.5	0.0	0.0	1.5
Merged-chr4-149586896-5	chr4	149586436	149587436	+	757.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023051, intron 1 of 18)	CpG	468.0	NM_023051	65945.0	Mm.38993	NM_023051	ENSMUSG00000039953	Clstn1	1810034E21Rik|Cst-1|Cstn1	calsyntenin 1	protein-coding	0.0	0.0	0.0	1.0	2.5	0.0
Merged-chr10-98780289-4	chr10	98779791	98780791	+	757.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-134351.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84204297-3	chr17	84203802	84204802	+	757.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 36 of 37)	ORR1D2|LTR|ERVL-MaLR	-16355.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35707095-3	chr8	35706591	35707591	+	757.377747	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118071.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	31.5	11.5	21.0	2.0	11.0	10.0
Merged-chr3-89319734-4	chr3	89319255	89320255	+	757.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010108, intron 1 of 4)	CpG	3124.0	NM_010108	13638.0	Mm.331159	NM_010108	ENSMUSG00000028039	Efna3	AW494418|EFL-2|Ehk1-L|Epl3|LERK-3	ephrin A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127640055-4	chr3	127639602	127640602	+	757.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6966.0	NM_009718	11924.0	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding	0.0	0.5	1.5	5.0	11.5	1.0
Merged-chr11-75291086-4	chr11	75290586	75291586	+	757.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57297.0	NM_001164223	68275.0	Mm.102574	NM_026653	ENSMUSG00000000751	Rpa1	5031405K23Rik|70kDa|AA589576|AW557552|RF-A|RP-A|Rpa	replication protein A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-56616488-2	chr8	56615988	56616988	+	757.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	65354.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35264926-2	chr7	35264426	35265426	+	757.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49581.0	NM_001024707	435965.0	Mm.333783	NM_001024707	ENSMUSG00000001802	Lrp3	-	low density lipoprotein receptor-related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70321860-2	chr11	70321360	70322360	+	757.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_145684, exon 2 of 14)	exon (NM_145684, exon 2 of 14)	670.0	NM_145684	11685.0	Mm.274093	NM_145684	ENSMUSG00000018907	Alox12e	12-LOX|8-LOX|AW259591|Alox12-ps1|Alox12-ps2|Aloxe|e-LOX1	arachidonate lipoxygenase, epidermal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-52078052-2	chr11	52077552	52078552	+	757.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166654, intron 13 of 13)	intron (NM_001166654, intron 13 of 13)	-20772.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118596671-2	chr9	118596171	118597171	+	757.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10038.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21639898-2	chr16	21639398	21640398	+	757.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 45 of 46)	intron (NM_001081366, intron 45 of 46)	54767.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-107504538-2	chr8	107504038	107505038	+	757.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025830, intron 6 of 23)	AT_rich|Low_complexity|Low_complexity	-46706.0	NR_029553	387158.0		NR_029553	ENSMUSG00000065439	Mir140	Mirn140|mir-140|mmu-mir-140	microRNA 140	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90332153-3	chr5	90331647	90332647	+	757.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198010, intron 1 of 32)	B3|SINE|B2	34038.0	NM_030886	81702.0	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	5.5	1.5	0.0	4.5	10.0	2.5
Merged-chr11-118401232-3	chr11	118400735	118401735	+	757.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011150, intron 1 of 5)	intron (NM_011150, intron 1 of 5)	724.0	NM_011150	19039.0	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119547487-3	chr11	119547034	119548034	+	757.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008730, exon 1 of 5)	exon (NM_008730, exon 1 of 5)	286.0	NM_008730	18164.0	Mm.5142	NM_008730	ENSMUSG00000025582	Nptx1	D11Bwg1004e|Np1	neuronal pentraxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-33256849-3	chr6	33256351	33257351	+	757.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347089, intron 1 of 9)	intron (NM_001347089, intron 1 of 9)	7723.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-106828080-3	chr4	106827553	106828553	+	757.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-23046.0	NM_001347159	329910.0	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-96586503-3	chr13	96586004	96587004	+	757.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023420, intron 3 of 17)	ORR1D1|LTR|ERVL-MaLR	43769.0	NM_023420	68018.0	Mm.24125	NM_023420	ENSMUSG00000021669	Col4a3bp	2810404O15Rik|9230101K08Rik|AU016711|CERT|GPBP	collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59569295-2	chr11	59568795	59569795	+	757.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2443.0	NM_001011789	257962.0	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-28204340-4	chr2	28203858	28204858	+	757.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038613, intron 1 of 5)	intron (NM_001038613, intron 1 of 5)	-1331.0	NM_001038612	56177.0	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27213097-3	chr15	27212598	27213598	+	757.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-253579.0	NM_020332	11732.0	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34098618-4	chr11	34098096	34099096	+	757.270874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155520)	promoter-TSS (NR_155520)	-42.0	NR_155520	76874.0	Mm.437529	NR_155520		4930469K13Rik	-	RIKEN cDNA 4930469K13 gene	ncRNA	1.0	3.5	3.5	1.0	2.0	7.0
Merged-chr2-6477320-2	chr2	6476820	6477820	+	757.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	124584.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166687438-2	chr2	166686938	166687938	+	757.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	26394.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105213438-4	chr4	105212927	105213927	+	757.233337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 4 of 5)	intron (NM_080555, intron 4 of 5)	56080.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-108353139-3	chr11	108352617	108353617	+	757.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9229.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0.0	5.5	3.0	0.0	4.5	3.0
Merged-chr4-133879370-3	chr4	133878844	133879844	+	757.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009097, intron 2 of 21)	intron (NM_009097, intron 2 of 21)	-4613.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	18.5	31.0	31.0	11.5	46.5	35.5
Merged-chr2-150836112-3	chr2	150835668	150836668	+	757.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 10 of 12)	B4|SINE|B4	6402.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-99048467-2	chr14	99047967	99048967	+	757.208374	f1_balb.idr|f1_c57bl6.idr	intron (NR_153765, intron 2 of 12)	MTC|LTR|ERVL-MaLR	2090.0	NM_175265	77744.0	Mm.23503	NM_175265	ENSMUSG00000022070	Bora	6720463M24Rik|AI317232	bora, aurora kinase A activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-78792635-4	chr12	78792138	78793138	+	757.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019579, intron 1 of 14)	MTD|LTR|ERVL-MaLR	43691.0	NM_019579	56217.0	Mm.425777	NM_019579	ENSMUSG00000021112	Mpp5	3830420B02Rik|AI255216|AI644496|Pals1	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)	protein-coding	7.5	4.0	0.0	4.0	8.0	7.0
Merged-chr1-34312256-4	chr1	34311684	34312684	+	757.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121015.0	NR_039562	100628580.0		NR_039562	ENSMUSG00000092852	Mir5103	mir-5103|mmu-mir-5103|mu-mir-5103	microRNA 5103	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31447409-3	chr15	31446898	31447898	+	757.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145852, intron 3 of 4)	intron (NM_145852, intron 3 of 4)	6291.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92385086-2	chr5	92384586	92385586	+	757.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	ORR1D1|LTR|ERVL-MaLR	-3048.0	NM_181728	109979.0	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86234842-2	chr17	86234342	86235342	+	757.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	52336.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-90653951-2	chr6	90653451	90654451	+	757.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34705.0	NM_001037493	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165198251-4	chr1	165197675	165198675	+	757.133362	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3737.0	NR_151712	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55649325-2	chr4	55648825	55649825	+	757.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-116850.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.0	3.0	2.0	2.5	0.0	1.5
Merged-chr18-55517055-3	chr18	55516556	55517556	+	757.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-524465.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	4.5	0.5	0.0	0.0	1.5
Merged-chr3-113630903-4	chr3	113630419	113631419	+	757.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026043)	promoter-TSS (NM_026043)	-770.0	NM_001038696	67225.0	Mm.316928	NM_026043	ENSMUSG00000027981	Rnpc3	2810441O16Rik|AI447568|C030014B17Rik	RNA-binding region (RNP1, RRM) containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74594291-3	chr15	74593817	74594817	+	757.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42001.0	NM_001177437	69439.0	Mm.263708	NM_001177437	ENSMUSG00000022603	Mroh4	1700016M24Rik	maestro heat-like repeat family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-60890719-1	chr19	60890219	60891219	+	757.0	f1_c57bl6.idr	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	970.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	6.0	25.0	13.0	1.5	7.5	9.0
Merged-chr10-98877542-2	chr10	98877042	98878042	+	757.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37100.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45518872-2	chr17	45518372	45519372	+	757.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_198608, exon 19 of 22)	exon (NM_198608, exon 19 of 22)	-4562.0	NM_013688	21645.0	Mm.491193	NM_013688	ENSMUSG00000023949	Tcte1	D17Sil1|Tcte-1	t-complex-associated testis expressed 1	protein-coding	1.5	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116738631-2	chr11	116738131	116739131	+	757.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13536.0	NR_003364	193217.0	Mm.100084	NR_003364		BC018473	-	cDNA sequence BC018473	ncRNA	14.0	0.0	0.5	14.0	0.0	0.5
Merged-chr4-41626673-1	chr4	41626173	41627173	+	757.0	f1_balb.idr	intron (NM_175138, intron 13 of 19)	intron (NM_175138, intron 13 of 19)	13629.0	NM_027147	69638.0	Mm.372459	NM_027147	ENSMUSG00000028445	Enho	1110065P19Rik|2310040A07Rik	energy homeostasis associated	protein-coding	3.5	0.0	2.5	0.0	1.5	0.0
Merged-chr11-103142565-3	chr11	103142051	103143051	+	757.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9192.0	NM_027658	71059.0	Mm.273871	NM_027658	ENSMUSG00000043372	Hexim2	4933402L21Rik	hexamethylene bis-acetamide inducible 2	protein-coding	1.5	2.5	1.5	0.0	2.5	0.5
Merged-chr16-36643593-2	chr16	36643093	36644093	+	757.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	22484.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7914658-1	chr9	7914158	7915158	+	757.0	f0_balb.idr	Intergenic	Intergenic	-41488.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52199548-3	chr3	52199052	52200052	+	757.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68785.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7598913-2	chr10	7598413	7599413	+	757.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359742, intron 3 of 5)	intron (NM_001359742, intron 3 of 5)	9113.0	NM_001359743	237253.0	Mm.206759	NM_172784	ENSMUSG00000019796	Lrp11	1700034J19Rik|6330533B21|9830160H19Rik	low density lipoprotein receptor-related protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75696561-2	chr15	75696061	75697061	+	757.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7727.0	NM_001163465	14787.0	Mm.57052	NM_008164	ENSMUSG00000022580	Rhpn1	BB023497|Grbp|Rhophilin|mKIAA1929	rhophilin, Rho GTPase binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102383618-2	chr12	102383118	102384118	+	757.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 8 of 9)	intron (NM_177620, intron 8 of 9)	56195.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-137948775-1	chr3	137948275	137949275	+	757.0	f1_c57bl6.idr	intron (NM_011932, intron 4 of 8)	intron (NM_011932, intron 4 of 8)	30220.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	3.5	5.5	9.5	4.0	24.5	13.0
Merged-chr1-181230240-2	chr1	181229740	181230740	+	757.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18262.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56478612-2	chr17	56478112	56479112	+	757.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2132.0	NM_011218	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45034954-2	chr14	45034454	45035454	+	757.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	46843.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-13008408-2	chr18	13007908	13008908	+	757.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153087, intron 1 of 2)	intron (NM_153087, intron 1 of 2)	1418.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120114736-2	chr10	120114236	120115236	+	757.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-1771.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70796514-1	chr8	70796014	70797014	+	757.0	f1_c57bl6.idr	Intergenic	Intergenic	-1621.0	NR_106099	102466823.0		NR_106099	ENSMUSG00000099031	Mir7240	Gm27487|mmu-mir-7240	microRNA 7240	ncRNA	1.0	2.0	0.5	3.5	1.5	1.5
Merged-chr2-145744368-3	chr2	145743881	145744881	+	757.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 3 of 3)	intron (NR_033220, intron 3 of 3)	-41735.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29646828-2	chr2	29646328	29647328	+	757.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	27108.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30058577-2	chr16	30058063	30059063	+	757.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6794.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	0.5	7.0	3.0	4.5	0.0	0.0
Merged-chr11-87204996-2	chr11	87204496	87205496	+	757.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_197987, intron 19 of 23)	L1MB7|LINE|L1	77921.0	NM_197987	68729.0	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-74963989-2	chr14	74963489	74964489	+	757.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11097.0	NR_046078	100043169.0	Mm.145900	NR_046078	ENSMUSG00000115019	Gm4278	-	predicted gene 4278	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39366847-2	chr10	39366347	39367347	+	757.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-2952.0	NM_001122892	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85231597-2	chr12	85231097	85232097	+	757.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	12116.0	NM_145445	217715.0	Mm.29041	NM_145445	ENSMUSG00000004788	Eif2b2	EIF-2Bbeta|EIF2B	eukaryotic translation initiation factor 2B, subunit 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121997984-1	chr14	121997484	121998484	+	757.0	f1_balb.idr	intron (NM_026861, intron 7 of 8)	intron (NM_026861, intron 7 of 8)	-32791.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	0.0	2.0	0.0	3.0	1.0	0.0
Merged-chr10-116481831-2	chr10	116481331	116482331	+	757.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8308.0	NM_021452	58802.0	Mm.440652	NM_021452	ENSMUSG00000054934	Kcnmb4	1700058G18Rik|2900045G12Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148169939-3	chr4	148169485	148170485	+	757.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	9317.0	NM_176848	230904.0	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	2.0	5.0	0.0	1.0	4.5	4.0
Merged-chr1-20452614-1	chr1	20452114	20453114	+	757.0	f0_balb.idr	intron (NM_153179, intron 35 of 66)	intron (NM_153179, intron 35 of 66)	96160.0	NR_045734	75028.0	Mm.417820	NR_045734	ENSMUSG00000089914	4930486I03Rik	-	RIKEN cDNA 4930486I03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146113272-1	chr6	146112772	146113772	+	757.0	f0_balb.idr	intron (NM_019923, intron 55 of 56)	intron (NM_019923, intron 55 of 56)	179150.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152743693-2	chr2	152743193	152744193	+	757.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7442.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	4.0	0.0	2.5	2.5	10.5	8.5
Merged-chr11-60091211-1	chr11	60090711	60091711	+	757.0	f0_balb.idr	Intergenic	Intergenic	-13802.0	NM_009021	19377.0	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39006857-3	chr6	39006335	39007335	+	757.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 5 of 12)	ORR1F|LTR|ERVL-MaLR	60751.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168629024-1	chr2	168628524	168629524	+	757.0	f0_balb.idr	Intergenic	Intergenic	11735.0	NR_105971	102466784.0		NR_105971	ENSMUSG00000105496	Mir7004	mmu-mir-7004	microRNA 7004	ncRNA	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr9-32349536-2	chr9	32349036	32350036	+	757.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5299.0	NM_010605	16521.0	Mm.69472	NM_010605	ENSMUSG00000032034	Kcnj5	GIRK4|Kir3.4	potassium inwardly-rectifying channel, subfamily J, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-105975250-2	chr11	105974750	105975750	+	757.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009598)	promoter-TSS (NM_009598)	42.0	NM_009598	11421.0	Mm.754	NM_009598	ENSMUSG00000020681	Ace	AW208573|CD143	angiotensin I converting enzyme (peptidyl-dipeptidase A) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101609915-1	chr7	101609415	101610415	+	757.0	f1_balb.idr	Intergenic	Lx3C|LINE|L1	-28754.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	5.5	7.5	20.5	21.5	26.0	53.5
Merged-chr11-100612346-4	chr11	100611850	100612850	+	756.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019795, intron 1 of 13)	MLTR14|LTR|ERV1	7818.0	NM_019795	56354.0	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-22806504-3	chr2	22805978	22806978	+	756.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	32151.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4557229-4	chr2	4556726	4557726	+	756.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 11 of 23)	intron (NM_001177843, intron 11 of 23)	-2528.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-122922950-4	chr4	122922435	122923435	+	756.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36859.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-32770659-3	chr14	32770163	32771163	+	756.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15300.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79135168-3	chr12	79134678	79135678	+	756.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009705, intron 2 of 7)	intron (NM_009705, intron 2 of 7)	4390.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	4.5	25.5	15.0	4.5	25.5	15.0
Merged-chr12-102703455-3	chr12	102702939	102703939	+	756.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	1430.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32572739-3	chr16	32572263	32573263	+	756.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36133.0	NM_011638	22042.0	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr12-55451273-2	chr12	55450773	55451773	+	756.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	41374.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120128233-4	chr7	120127707	120128707	+	756.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17084.0	NM_011775	22787.0	Mm.6510	NM_011775	ENSMUSG00000030911	Zp2	Zp-2	zona pellucida glycoprotein 2	protein-coding	0.0	0.0	0.0	3.0	0.0	0.5
Merged-chr8-125559276-3	chr8	125558815	125559815	+	756.833313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	10548.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	33.5	73.5	37.0	26.5	65.0	54.5
Merged-chr6-89679635-3	chr6	89679119	89680119	+	756.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34584.0	NM_053228	113855.0	Mm.377152	NM_053228	ENSMUSG00000096051	Vmn1r40	V1rb7	vomeronasal 1 receptor 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87695524-3	chr16	87695019	87696019	+	756.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3435.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136464475-3	chr5	136463986	136464986	+	756.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291238, intron 2 of 22)	L3|LINE|CR1	-88683.0	NR_030500	723975.0		NR_030500	ENSMUSG00000106479	Mir721	Mirn721|miRY|mir-721|mmu-mir-721	microRNA 721	ncRNA	22.5	26.5	21.5	22.0	13.5	18.0
Merged-chr5-140754519-2	chr5	140754019	140755019	+	756.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30392.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr10-81241077-4	chr10	81240549	81241549	+	756.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034895, intron 4 of 17)	intron (NM_001034895, intron 4 of 17)	7886.0	NM_001034895	103406.0	Mm.158783	NM_001034895	ENSMUSG00000034949	Zfr2	2010013I23Rik|9130206N08Rik|AW045600|mKIAA1086	zinc finger RNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158550337-2	chr2	158549837	158550837	+	756.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145015, intron 14 of 14)	intron (NM_001145015, intron 14 of 14)	37541.0	NM_001145015	545481.0	Mm.125371	NM_001145015	ENSMUSG00000074625	Arhgap40	C20orf95|Gm14203	Rho GTPase activating protein 40	protein-coding	3.0	0.0	0.0	4.0	0.0	0.0
Merged-chr2-153562441-3	chr2	153561952	153562952	+	756.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-32481.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0.0	0.0	0.0	2.0	0.0	0.0
Merged-chr1-33503716-3	chr1	33503222	33504222	+	756.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008922, intron 10 of 13)	Tigger14a|DNA|TcMar-Tigger	166072.0	NM_008922	19076.0	Mm.27705	NM_008922	ENSMUSG00000026134	Prim2	AI323589	DNA primase, p58 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135954435-3	chr4	135953890	135954890	+	756.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357530, intron 5 of 9)	B3|SINE|B2	6984.0	NM_001357530	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-127264113-3	chr6	127263731	127264731	+	756.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43736.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180366561-3	chr1	180366055	180367055	+	756.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-36006.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119955097-5	chr11	119954565	119955565	+	756.700012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037754, intron 1 of 13)	intron (NM_001037754, intron 1 of 13)	11973.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-41015469-4	chr8	41014998	41015998	+	756.69165	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 6 of 13)	intron (NM_001005863, intron 6 of 13)	-1970.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	41.5	128.5	61.0	31.5	70.5	33.0
Merged-chr19-16009419-3	chr19	16008915	16009915	+	756.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045355, intron 2 of 2)	MTD|LTR|ERVL-MaLR	24340.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	6.0	13.5	0.5	4.5	6.0	4.0
Merged-chr18-74964770-2	chr18	74964270	74965270	+	756.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3507.0	NM_010720	16891.0	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24526586-1	chr17	24526086	24527086	+	756.666687	f0_balb.idr	intron (NM_001172113, intron 1 of 20)	intron (NM_001172113, intron 1 of 20)	1352.0	NM_153792	224619.0	Mm.275150	NM_153792	ENSMUSG00000052752	Traf7	RFWD1	TNF receptor-associated factor 7	protein-coding	1.5	2.5	1.5	1.5	3.5	11.5
Merged-chr19-57079823-3	chr19	57079337	57080337	+	756.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001103178, exon 3 of 20)	exon (NM_001103178, exon 3 of 20)	39187.0	NM_001347459	226251.0	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	0.5	0.0	10.0	0.0	0.0	1.0
Merged-chr11-66985112-2	chr11	66984612	66985612	+	756.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27218.0	NR_130646	71576.0	Mm.340077	NR_130315	ENSMUSG00000085683	Tmem238l	9130409J20Rik	transmembrane protein 238 like	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129182610-2	chr6	129182110	129183110	+	756.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_053109, intron 1 of 4)	ID_B1|SINE|B4	1995.0	NM_053109	93694.0	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	25.0	37.5	18.5	15.5	23.5	21.5
Merged-chr14-8098721-2	chr14	8098221	8099221	+	756.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	510.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172451307-4	chr1	172450776	172451776	+	756.645874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24084.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	6.5	27.0	20.5	5.5	39.0	19.0
Merged-chr2-43794222-3	chr2	43793770	43794770	+	756.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 2 of 14)	intron (NM_001301831, intron 2 of 14)	45446.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21101907-1	chr14	21101407	21102407	+	756.599976	f0_balb.idr	intron (NM_134079, intron 2 of 10)	intron (NM_134079, intron 2 of 10)	25755.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	5.0	0.0	1.5	2.0	2.5	5.5
Merged-chr9-90200508-3	chr9	90200057	90201057	+	756.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001326294)	TTS (NM_001326294)	37579.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122702994-4	chr5	122702512	122703512	+	756.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-4532.0	NM_001310720	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-10052269-3	chr18	10051701	10052701	+	756.571411	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	-22052.0	NM_021522	59025.0	Mm.329277	NM_021522	ENSMUSG00000047879	Usp14	2610005K12Rik|2610037B11Rik|AW107924|C78769|ax|nmf375	ubiquitin specific peptidase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-97845765-3	chr16	97845272	97846272	+	756.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359077, intron 1 of 23)	intron (NM_001359077, intron 1 of 23)	5455.0	NM_144789	114604.0	Mm.328741	NM_144789	ENSMUSG00000014039	Prdm15	C21orf83|E130018M06Rik|ORF62|Zfp298	PR domain containing 15	protein-coding	9.5	1.5	1.0	5.0	7.0	10.5
Merged-chr3-35931903-3	chr3	35931405	35932405	+	756.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205361, intron 1 of 6)	intron (NM_001205361, intron 1 of 6)	429.0	NM_001205362	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40248915-3	chr12	40248422	40249422	+	756.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25558.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120319953-2	chr11	120319453	120320453	+	756.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	27460.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127598371-2	chr10	127597871	127598871	+	756.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	B3A|SINE|B2	22777.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	41.5	94.5	116.0	85.5	182.0	133.0
Merged-chr8-108703407-2	chr8	108702907	108703907	+	756.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-11237.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	3.5	6.0	8.5	4.5	6.0	8.5
Merged-chr11-101323130-2	chr11	101322630	101323630	+	756.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011192, exon 11 of 11)	3' UTR (NM_011192, exon 11 of 11)	-1933.0	NM_178932	237940.0	Mm.302277	NM_178932	ENSMUSG00000078651	Aoc2	RAO	amine oxidase, copper containing 2 (retina-specific)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102304516-2	chr12	102304005	102305005	+	756.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	20864.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	2.0	1.5	0.0	3.0	10.0	0.5
Merged-chr18-24611566-2	chr18	24611066	24612066	+	756.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360909, intron 3 of 20)	intron (NM_001360909, intron 3 of 20)	7605.0	NM_021448	58523.0	Mm.25298	NM_021448	ENSMUSG00000024271	Elp2	AU023723|Epl2|StIP1|Statip1	elongator acetyltransferase complex subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-94484250-2	chr3	94483755	94484755	+	756.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357787)	promoter-TSS (NM_001357787)	-72.0	NM_001357787	78784.0	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|ETR-1|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	0.0	1.5	1.0	0.0	1.0	6.5
Merged-chr5-137553550-2	chr5	137553050	137554050	+	756.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031404)	promoter-TSS (NM_031404)	-5.0	NM_031404	83766.0	Mm.31646	NM_031404	ENSMUSG00000029712	Actl6b	Actl6|ArpNa|Baf53b	actin-like 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95107025-2	chr11	95106525	95107525	+	756.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13092.0	NM_010055	13393.0	Mm.5194	NM_010055	ENSMUSG00000001510	Dlx3	AV237891|Dlx-3	distal-less homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107720921-2	chr13	107720421	107721421	+	756.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33524.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118858170-2	chr9	118857670	118858670	+	756.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 9 of 13)	intron (NM_001113514, intron 9 of 13)	-68366.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	5.5	9.0	2.5	2.5	1.5	1.0
Merged-chr6-125364999-2	chr6	125364501	125365501	+	756.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198604, intron 14 of 16)	intron (NM_198604, intron 14 of 16)	15278.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	4.0	0.5	7.0	1.5	8.0	7.5
Merged-chr1-152583714-2	chr1	152583214	152584214	+	756.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	41503.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5602650-2	chr17	5602150	5603150	+	756.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	110050.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70029192-2	chr11	70028692	70029692	+	756.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007864, intron 2 of 19)	intron (NM_007864, intron 2 of 19)	10587.0	NM_007864	13385.0	Mm.27256	NM_007864	ENSMUSG00000020886	Dlg4	Dlgh4|PSD-95|PSD95|SAP90|SAP90A	discs large MAGUK scaffold protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86194852-2	chr15	86194352	86195352	+	756.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-8711.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153501252-2	chr1	153500752	153501752	+	756.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13592.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72169931-2	chr5	72169431	72170431	+	756.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1742.0	NM_001356614	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19331511-2	chr7	19331018	19332018	+	756.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-13553.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	3.0	1.0	1.0	0.0	0.0	0.0
Merged-chr4-134120411-4	chr4	134119981	134120981	+	756.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026257, intron 8 of 14)	ID_B1|SINE|B4	8272.0	NM_080559	73723.0	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	2.0	13.0	21.5	0.0	7.5	4.5
Merged-chr14-73387961-2	chr14	73387461	73388461	+	756.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-2672.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-8688452-2	chr6	8687952	8688952	+	756.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252266, intron 5 of 11)	RLTR51A_Mm|LTR|ERVK?	70006.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118893444-2	chr10	118892944	118893944	+	756.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24541.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67607301-2	chr5	67606801	67607801	+	756.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033415)	promoter-TSS (NM_001033415)	-582.0	NM_001033415	330096.0	Mm.442747	NM_001033415	ENSMUSG00000050010	Shisa3	D830007B15Rik	shisa family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43231683-2	chr5	43231183	43232183	+	756.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 1 of 7)	intron (NR_028417, intron 1 of 7)	-1780.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10604610-2	chr19	10604110	10605110	+	756.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145496)	promoter-TSS (NM_145496)	-352.0	NM_145496	225913.0	Mm.374868	NM_145496	ENSMUSG00000034371	Tkfc	BC021917|Dak	triokinase, FMN cyclase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106535590-2	chr8	106535090	106536090	+	756.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037809, intron 3 of 15)	intron (NM_001037809, intron 3 of 15)	24738.0	NM_001037809	12560.0	Mm.4658	NM_007665	ENSMUSG00000061048	Cdh3	AI385538|Cadp|Cdhp|P-cadherin|Pcad	cadherin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-126629310-2	chr3	126628819	126629819	+	756.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	32368.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	24.5	54.0	80.0	29.0	132.5	95.5
Merged-chr5-77269498-2	chr5	77268998	77269998	+	756.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011263, intron 2 of 3)	ID_B1|SINE|B4	-3259.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-78683458-2	chr18	78682958	78683958	+	756.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86508.0	NM_207651	27411.0	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	2.0	0.0	2.0	4.0	1.5	2.0
Merged-chr4-119165967-2	chr4	119165467	119166467	+	756.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	7889.0	NM_001145935	195522.0	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	0.0	0.0	6.0	1.0	4.0	1.0
Merged-chr19-32166607-2	chr19	32166107	32167107	+	756.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	(A)n|Simple_repeat|Simple_repeat	44406.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-67398717-2	chr13	67398217	67399217	+	756.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080941, intron 1 of 3)	LTR10_RN|LTR|ERVK	1050.0	NM_001080941	72807.0	Mm.303790	NM_001080941	ENSMUSG00000078994	Zfp429	2810487A22Rik|AI929863|Rsl2	zinc finger protein 429	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-58556832-2	chr3	58556288	58557288	+	756.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005509, intron 13 of 13)	intron (NM_001005509, intron 13 of 13)	-19848.0	NM_001040396	69227.0	Mm.270950	NM_001040396	ENSMUSG00000075700	Selenot	2810407C02Rik|5730408P04Rik|Selt	selenoprotein T	protein-coding	50.5	55.0	18.0	0.0	3.0	10.0
Merged-chr4-122833666-2	chr4	122833166	122834166	+	756.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-2561.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-28827095-2	chr6	28826595	28827595	+	756.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 16 of 23)	intron (NM_019776, intron 16 of 23)	4652.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31355135-3	chr16	31354648	31355648	+	756.483337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29858.0	NR_155301	102636590.0	Mm.45825	NR_155301		AV205837	-	expressed sequence AV205837	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51941933-3	chr14	51941455	51942455	+	756.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-19182.0	NM_001011687	497071.0	Mm.378602	NM_001011687	ENSMUSG00000068392	Rnase13	-	ribonuclease, RNase A family, 13 (non-active)	protein-coding	64.5	127.5	86.0	152.0	270.5	170.5
Merged-chr2-60269538-4	chr2	60269028	60270028	+	756.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025422, intron 2 of 4)	L2|LINE|L2	14956.0	NM_025422	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119273551-3	chr11	119273112	119274112	+	756.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008064, intron 3 of 19)	intron (NM_008064, intron 3 of 19)	5649.0	NM_008064	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	6.0	3.5	1.0	6.5	18.5	1.0
Merged-chr18-4255742-3	chr18	4255238	4256238	+	756.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89906.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83137062-3	chr6	83136527	83137527	+	756.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009106)	promoter-TSS (NM_009106)	-57.0	NM_009106	20166.0	Mm.4139	NM_009106	ENSMUSG00000034930	Rtkn	-	rhotekin	protein-coding	0.5	5.0	1.0	0.5	2.5	2.0
Merged-chr9-61337347-4	chr9	61336848	61337848	+	756.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35018.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5527467-3	chr17	5526988	5527988	+	756.416687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	RLTR10D2|LTR|ERVK	34888.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-53692136-4	chr9	53691646	53692646	+	756.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175562, intron 1 of 1)	B2_Mm1a|SINE|B2	14086.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19300343-3	chr3	19299875	19300875	+	756.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122759, intron 1 of 12)	(TG)n|Simple_repeat|Simple_repeat	10947.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	0.0	0.0	1.5	0.0	0.5	0.0
Merged-chr2-72202415-3	chr2	72201923	72202923	+	756.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355478, intron 11 of 26)	intron (NM_001355478, intron 11 of 26)	-83214.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	15.0	16.0	6.5	2.0	0.5	3.0
Merged-chr13-86018769-3	chr13	86018261	86019261	+	756.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28034.0	NM_007749	12867.0	Mm.378898	NM_007749	ENSMUSG00000017778	Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding	9.5	4.0	0.0	7.5	30.5	16.0
Merged-chr18-36319057-3	chr18	36318538	36319538	+	756.366638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18937.0	NM_001267796	109169.0	Mm.426423	NM_001267796	ENSMUSG00000110185	Igip	6330403M23Rik	IgA inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96069841-2	chr3	96069343	96070343	+	756.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D6|LTR|ERVK	-11388.0	NM_013841	22365.0	Mm.263185	NM_013841	ENSMUSG00000015747	Vps45	AI462172|AW554165|mVps45	vacuolar protein sorting 45	protein-coding	7.5	5.0	2.5	0.5	6.5	0.0
Merged-chr6-8617548-2	chr6	8617048	8618048	+	756.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97490.0	NM_001286729	170772.0	Mm.210787	NM_133236	ENSMUSG00000029638	Glcci1	2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1	glucocorticoid induced transcript 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-146168002-2	chr4	146167502	146168502	+	756.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177545, intron 2 of 4)	IAPLTR4|LTR|ERVK	10312.0	NM_001177545	667666.0	Mm.459230	NM_001177545	ENSMUSG00000066007	Zfp600	Gm13164	zinc finger protein 600	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165653700-3	chr1	165653239	165654239	+	756.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 5 of 5)	L2b|LINE|L2	-19198.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21994128-3	chr11	21993604	21994604	+	756.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011023)	TTS (NM_011023)	7547.0	NM_011023	18423.0	Mm.129663	NM_011023	ENSMUSG00000005917	Otx1	A730044F23Rik|jv	orthodenticle homeobox 1	protein-coding	1.0	0.0	0.0	0.0	0.0	1.0
Merged-chr17-22166073-3	chr17	22165522	22166522	+	756.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177596)	promoter-TSS (NM_177596)	-45.0	NM_177596	210853.0	Mm.441622	NM_177596	ENSMUSG00000063383	Zfp947	6720451E15|EG210853|Gm4769	zinc finger protein 947	protein-coding	3.5	5.5	2.5	0.0	0.5	3.5
Merged-chr10-127527666-3	chr10	127527166	127528166	+	756.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183297, intron 1 of 1)	intron (NM_183297, intron 1 of 1)	-5222.0	NM_028230	108037.0	Mm.29890	NM_028230	ENSMUSG00000025403	Shmt2	2700043D08Rik|AA408223|AA986903|SHMT	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100885773-3	chr12	100885269	100886269	+	756.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177674, intron 2 of 2)	intron (NM_001177674, intron 2 of 2)	13755.0	NM_001177674	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	3.0	4.5	0.0	4.0	4.5	0.0
Merged-chr9-97068909-3	chr9	97068399	97069399	+	756.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42142.0	NM_138756	192287.0	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-73518094-3	chr6	73517587	73518587	+	756.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47066.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	0.0	0.0	0.0	1.5	0.0	1.0
Merged-chr15-42965446-3	chr15	42964969	42965969	+	756.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B1|LTR|ERVL	205349.0	NM_001357957	239405.0	Mm.193274	NM_172815	ENSMUSG00000051920	Rspo2	2610028F08Rik|AA673245|D430027K22|ftls	R-spondin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30806310-4	chr5	30805825	30806825	+	756.325012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8316.0	NM_133350	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61374571-4	chr9	61373992	61374992	+	756.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083928, intron 2 of 19)	intron (NM_001083928, intron 2 of 19)	2126.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6441852-3	chr15	6441428	6442428	+	756.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-3405.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118119268-2	chr7	118118768	118119768	+	756.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019419, exon 6 of 6)	3' UTR (NM_019419, exon 6 of 6)	-3121.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-131268409-2	chr6	131267921	131268921	+	756.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21059.0	NM_008462	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	12.5	29.5	21.5	9.0	49.0	15.0
Merged-chr1-150335333-3	chr1	150334833	150335833	+	756.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040603, intron 2 of 3)	intron (NR_040603, intron 2 of 3)	11438.0	NR_040603	75584.0	Mm.47709	NR_040603	ENSMUSG00000099447	2310030A07Rik	-	RIKEN cDNA 2310030A07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41071750-4	chr19	41071245	41072245	+	756.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153520, intron 2 of 5)	intron (NM_153520, intron 2 of 5)	5368.0	NM_153520	226115.0	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-142703093-4	chr2	142702594	142703594	+	756.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 22 of 26)	L1MA4A|LINE|L1	198370.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-74790447-2	chr5	74789926	74790926	+	756.200012	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87523.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	1.5	0.0	1.0	0.0	0.0	0.5
Merged-chr5-44075573-3	chr5	44075029	44076029	+	756.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163578, intron 1 of 22)	intron (NM_001163578, intron 1 of 22)	19239.0	NM_001163581	19126.0	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-32775486-2	chr14	32774986	32775986	+	756.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-10477.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165710126-3	chr1	165709600	165710600	+	756.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2006.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-51814606-3	chr17	51814066	51815066	+	756.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163632, intron 1 of 10)	intron (NM_001163632, intron 1 of 10)	-2382.0	NM_001357636	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108690240-2	chr3	108689740	108690740	+	756.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029522, intron 10 of 14)	intron (NM_029522, intron 10 of 14)	32059.0	NM_029522	76123.0	Mm.226941	NM_029522	ENSMUSG00000027883	Gpsm2	6230410J09Rik|LGN|Pins	G-protein signalling modulator 2 (AGS3-like, C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94328961-2	chr11	94328461	94329461	+	756.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_027799, intron 1 of 4)	intron (NM_027799, intron 1 of 4)	960.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	1.5	20.5	10.0	0.5	4.5	9.0
Merged-chr7-114817713-4	chr7	114817213	114818213	+	756.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173767, intron 7 of 12)	intron (NM_173767, intron 7 of 12)	71947.0	NM_173767	233752.0	Mm.83037	NM_173767	ENSMUSG00000048782	Insc	3830422K02Rik|C730020D23	INSC spindle orientation adaptor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100231706-2	chr15	100231206	100232206	+	756.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_007497, intron 1 of 6)	intron (NM_007497, intron 1 of 6)	3847.0	NM_007497	11908.0	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134251407-3	chr4	134250908	134251908	+	756.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001099296, exon 2 of 2)	exon (NM_001099296, exon 2 of 2)	2698.0	NM_001099296	72690.0	Mm.100168	NM_001099296	ENSMUSG00000050105	Grrp1	2810043G13Rik|Fam110d	glycine/arginine rich protein 1	protein-coding	0.5	1.5	2.5	6.0	2.0	4.0
Merged-chr12-33159521-3	chr12	33158998	33159998	+	756.083313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028139, intron 2 of 3)	intron (NM_028139, intron 2 of 3)	11812.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72144816-3	chr6	72144298	72145298	+	756.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 4 of 6)	intron (NM_001035228, intron 4 of 6)	-21601.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-157764012-4	chr3	157763514	157764514	+	756.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161049.0	NM_145953	107869.0	Mm.28301	NM_145953	ENSMUSG00000028179	Cth	0610010I13Rik|AI314617|BC019483|CSE|Cys3	cystathionase (cystathionine gamma-lyase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr1-46970633-3	chr1	46970135	46971135	+	756.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44859.0	NM_001356417	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	1.5	1.0	0.0	1.5	1.0	0.0
Merged-chr12-77241031-4	chr12	77240517	77241517	+	756.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045554, intron 1 of 11)	(T)n|Simple_repeat|Simple_repeat	2278.0	NR_045554	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101670025-4	chr4	101669529	101670529	+	756.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22246.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	0.0	0.5	0.0	0.5	0.0	0.0
Merged-chr14-60249397-2	chr14	60248897	60249897	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362440, intron 1 of 14)	intron (NM_001362440, intron 1 of 14)	2082.0	NM_001362440	71844.0	Mm.258051	NM_170591	ENSMUSG00000114797	Nupl1	1700017F11Rik|Nup58|mKIAA0410	nucleoporin like 1	protein-coding	0.5	0.0	0.5	1.0	0.0	0.5
Merged-chr16-31839487-2	chr16	31838987	31839987	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357281, intron 13 of 22)	B3|SINE|B2	-39323.0	NM_013900	30060.0	Mm.30988	NM_013900	ENSMUSG00000022780	Meltf	CD228|MTf|Mfi2	melanotransferrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120786336-1	chr6	120785836	120786836	+	756.0	f1_balb.idr	exon (NM_001081048, exon 4 of 10)	exon (NM_001081048, exon 4 of 10)	12568.0	NM_001081048	71803.0	Mm.425340	NM_001081048	ENSMUSG00000004902	Slc25a18	1500015I14Rik|AW125787	solute carrier family 25 (mitochondrial carrier), member 18	protein-coding	3.0	0.0	9.5	8.5	3.0	5.0
Merged-chr17-86674383-1	chr17	86673883	86674883	+	756.0	f1_c57bl6.idr	Intergenic	Intergenic	-79481.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	7.0	0.0	9.5	0.5	0.0	6.0
Merged-chr12-85335612-2	chr12	85335112	85336112	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145138, intron 2 of 21)	intron (NM_145138, intron 2 of 21)	3750.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-72946541-4	chr11	72946059	72947059	+	756.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14610.0	NM_016745	53313.0	Mm.6306	NM_016745	ENSMUSG00000020788	Atp2a3	SERCA3b|Serca3	ATPase, Ca++ transporting, ubiquitous	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-47362408-3	chr13	47361903	47362903	+	756.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	168400.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100681488-2	chr15	100680988	100681988	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033612, intron 5 of 7)	intron (NM_033612, intron 5 of 7)	6432.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88343518-1	chr4	88343018	88344018	+	756.0	f0_balb.idr	intron (NM_001081184, intron 26 of 43)	intron (NM_001081184, intron 26 of 43)	95408.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90896322-1	chr5	90895822	90896822	+	756.0	f0_balb.idr	Intergenic	Lx3C|LINE|L1	5077.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127626236-3	chr3	127625733	127626733	+	756.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GC_rich|Low_complexity|Low_complexity	-6903.0	NM_009718	11924.0	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding	1.0	0.0	6.0	1.0	0.0	6.5
Merged-chr5-136905882-2	chr5	136905382	136906382	+	756.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2268.0	NM_026073	67286.0	Mm.41779	NM_026073	ENSMUSG00000007987	Ift22	3110017O03Rik|AI835745|AI847427|Rabl5	intraflagellar transport 22	protein-coding	7.0	1.0	0.0	0.0	2.5	5.5
Merged-chr7-80390319-2	chr7	80389819	80390819	+	756.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081454, exon 16 of 16)	3' UTR (NM_001081454, exon 16 of 16)	-2373.0	NM_010194	14159.0	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	9.0	7.5	9.0	10.0	8.5	6.0
Merged-chr18-77875203-2	chr18	77874703	77875703	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 11 of 14)	B2_Mm1a|SINE|B2	-63264.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52649239-2	chr13	52648739	52649739	+	756.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001198977)	TTS (NM_001198977)	52357.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74983477-2	chr11	74982977	74983977	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 9 of 18)	intron (NM_001002764, intron 9 of 18)	57605.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16343582-1	chr19	16343082	16344082	+	756.0	f0_balb.idr	intron (NM_008139, intron 5 of 6)	intron (NM_008139, intron 5 of 6)	-28578.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-75436676-3	chr9	75436203	75437203	+	756.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-4821.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	10.0	39.5	24.0	13.5	41.0	25.0
Merged-chr6-51270908-2	chr6	51270408	51271408	+	756.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029719)	promoter-TSS (NR_029719)	-998.0	NR_029719	387166.0		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	0.0	10.5	0.0	0.0	5.0	0.0
Merged-chr7-74685578-1	chr7	74685078	74686078	+	756.0	f1_c57bl6.idr	Intergenic	Intergenic	-130798.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	10.0	4.5	4.0	1.5	18.0	9.0
Merged-chr10-82862470-2	chr10	82861970	82862970	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042513, intron 2 of 14)	intron (NM_001042513, intron 2 of 14)	2129.0	NM_001042514	50493.0	Mm.210155	NM_015762	ENSMUSG00000020250	Txnrd1	TR|TR1|TrxR1	thioredoxin reductase 1	protein-coding	3.0	10.5	4.0	3.0	0.0	2.5
Merged-chr7-4776401-2	chr7	4775901	4776901	+	756.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008350, exon 2 of 5)	exon (NM_008350, exon 2 of 5)	1740.0	NM_008350	16156.0	Mm.35814	NM_008350	ENSMUSG00000004371	Il11	IL-11	interleukin 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125043742-1	chr6	125043242	125044242	+	756.0	f1_c57bl6.idr	intron (NM_133345, intron 1 of 7)	intron (NM_133345, intron 1 of 7)	3894.0	NM_133345	28019.0	Mm.262547	NM_133345	ENSMUSG00000030330	Ing4	D6Wsu147e|D6Xrf92|p29ING4	inhibitor of growth family, member 4	protein-coding	0.0	0.0	0.5	0.0	0.5	1.5
Merged-chr15-97347610-2	chr15	97347110	97348110	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 3 of 5)	intron (NM_172293, intron 3 of 5)	-100323.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74384705-2	chr1	74384205	74385205	+	756.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013612, exon 13 of 15)	exon (NM_013612, exon 13 of 15)	-6904.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7012640-2	chr19	7012140	7013140	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362399, intron 6 of 14)	B4A|SINE|B4	6829.0	NM_153795	108101.0	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102021622-2	chr7	102021122	102022122	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 8 of 8)	intron (NM_029211, intron 8 of 8)	-3467.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83719442-1	chr8	83718942	83719942	+	756.0	f1_c57bl6.idr	exon (NM_197982, exon 2 of 11)	exon (NM_197982, exon 2 of 11)	4265.0	NM_197982	68278.0	Mm.28222	NM_197982	ENSMUSG00000005481	Ddx39	2610307C23Rik|BAT1|DDXL|Ddx39a|URH49	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	protein-coding	4.0	17.5	10.0	0.0	8.5	8.0
Merged-chr4-95248258-1	chr4	95247758	95248758	+	756.0	f0_balb.idr	Intergenic	Intergenic	-196036.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-16473553-3	chr16	16473067	16474067	+	756.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 7 of 16)	RLTR10D2|LTR|ERVK	53844.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.0	1.5	4.5	0.0	0.0	0.0
Merged-chr6-9716561-2	chr6	9716060	9717060	+	756.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	766541.0	NM_008751	18231.0	Mm.46954	NM_008751	ENSMUSG00000046178	Nxph1	C130005L03Rik	neurexophilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-39011922-2	chr2	39011422	39012422	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028809, intron 1 of 3)	B1_Mm|SINE|Alu	3783.0	NM_028809	74192.0	Mm.38155	NM_028809	ENSMUSG00000026755	Arpc5l	2010015J01Rik|AI852867|ARC16-2|AW555592|AW742746	actin related protein 2/3 complex, subunit 5-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52635545-2	chr13	52635045	52636045	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 9 of 13)	intron (NM_011518, intron 9 of 13)	38663.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4698402-1	chr19	4697902	4698902	+	756.0	f1_c57bl6.idr	exon (NM_001033447, exon 1 of 15)	exon (NM_001033447, exon 1 of 15)	266.0	NM_001033447	381196.0	Mm.297789	NM_001033447	ENSMUSG00000071691	Gm960	TOPOVIBL|Top6bl	predicted gene 960	protein-coding	2.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40415648-1	chr9	40415148	40416148	+	756.0	f1_balb.idr	intron (NM_001357617, intron 1 of 20)	intron (NM_001357617, intron 1 of 20)	-39231.0	NM_001357621	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	24.0	20.0	29.0	3.0	24.5	8.5
Merged-chr11-35771311-2	chr11	35770811	35771811	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145962, intron 1 of 6)	PB1D9|SINE|Alu	1816.0	NM_145962	211347.0	Mm.255044	NM_145962	ENSMUSG00000018846	Pank3	-	pantothenate kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156539378-1	chr2	156538878	156539878	+	756.0	f0_c57.idr	intron (NM_001006664, intron 21 of 21)	intron (NM_001006664, intron 21 of 21)	-8198.0	NM_026661	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	0.5	18.5	6.0	7.5	1.5	3.5
Merged-chr17-58624701-2	chr17	58624201	58625201	+	756.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	366674.0	NM_027001	69239.0	Mm.246732	NM_027001	ENSMUSG00000024227	Pdzph1	2610034M16Rik|AV114557	PDZ and pleckstrin homology domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-66831580-3	chr10	66831050	66832050	+	756.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88834.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-135400533-2	chr6	135400079	135401079	+	756.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	33086.0	NM_001288627	13730.0	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	10.5	1.5	0.0	6.5	0.0	4.0
Merged-chr2-79774611-4	chr2	79774111	79775111	+	756.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290743, intron 4 of 4)	intron (NM_001290743, intron 4 of 4)	66831.0	NM_001290743	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr19-5390525-2	chr19	5390025	5391025	+	756.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_033224)	TTS (NR_033224)	-1822.0	NM_016882	20227.0	Mm.34562	NM_016882	ENSMUSG00000039148	Sart1	U5-110K	squamous cell carcinoma antigen recognized by T cells 1	protein-coding	1.5	7.5	0.0	1.5	7.5	0.0
Merged-chr4-150613375-1	chr4	150612875	150613875	+	756.0	f1_c57bl6.idr	intron (NM_001085492, intron 15 of 22)	intron (NM_001085492, intron 15 of 22)	38799.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.0	9.5	7.5	2.5	12.5	4.0
Merged-chr3-79824391-2	chr3	79823891	79824891	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027495, intron 8 of 11)	intron (NM_027495, intron 8 of 11)	18271.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24869696-3	chr2	24869205	24870205	+	756.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012518, intron 4 of 26)	MERVL_2A-int|LTR|ERVL	49904.0	NM_172545	77683.0	Mm.24176	NM_172545	ENSMUSG00000036893	Ehmt1	9230102N17Rik|D330003E03|Eu-HMTase1|GLP|GLP1|KMT1D|mKIAA1876	euchromatic histone methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-28074805-3	chr10	28074282	28075282	+	756.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008983)	promoter-TSS (NM_008983)	-38.0	NM_001359355	19272.0	Mm.332303	NM_008983	ENSMUSG00000019889	Ptprk	AI853699|PTPk|RPTPkappa	protein tyrosine phosphatase, receptor type, K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88296375-2	chr1	88295875	88296875	+	756.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-10337.0	NM_134252	171382.0	Mm.218753	NM_134252	ENSMUSG00000036251	Trpm8	CMR1|LTRPC6|LTrpC-6|TRPP8|Trp-p8	transient receptor potential cation channel, subfamily M, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26699409-1	chr8	26698909	26699909	+	756.0	f1_c57bl6.idr	Intergenic	Intergenic	125014.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	252.0	409.0	308.5	192.5	286.5	241.0
Merged-chr7-63920037-2	chr7	63919537	63920537	+	756.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001256311, exon 3 of 3)	exon (NM_001256311, exon 3 of 3)	3180.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	2.0	18.5	8.0	1.0	0.0	1.0
Merged-chr14-30867219-3	chr14	30866732	30867732	+	756.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028839, intron 4 of 7)	intron (NM_028839, intron 4 of 7)	-12025.0	NM_181390	66175.0	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85840544-4	chr1	85840060	85841060	+	756.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355046, intron 5 of 9)	intron (NM_001355046, intron 5 of 9)	46543.0	NM_001355047	12283.0	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58982598-2	chr15	58982098	58983098	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	48788.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99383441-2	chr7	99382941	99383941	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201352, intron 1 of 17)	intron (NM_201352, intron 1 of 17)	1923.0	NM_001362166	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	0.0	0.0	2.0	1.5	0.0	0.5
Merged-chr3-31129627-2	chr3	31129127	31130127	+	756.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20293.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120466405-2	chr11	120465905	120466905	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_197995, intron 3 of 4)	intron (NM_197995, intron 3 of 4)	1195.0	NM_197995	70317.0	Mm.485046	NM_197995	ENSMUSG00000057594	Arl16	2600005N12Rik	ADP-ribosylation factor-like 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-71701103-2	chr5	71700603	71701603	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008069, intron 3 of 8)	CpG	1087.0	NM_008069	14400.0	Mm.38567	NM_008069	ENSMUSG00000029212	Gabrb1	AW061132|B230208N19Rik|Gabrb-1	gamma-aminobutyric acid (GABA) A receptor, subunit beta 1	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr10-71346222-2	chr10	71345722	71346722	+	756.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR25A|LTR|ERVK	-1373.0	NM_134007	52637.0	Mm.254114	NM_134007	ENSMUSG00000037710	Cisd1	AU043990|AW743335|D10Ertd214e|Zcd1|mitoNEET	CDGSH iron sulfur domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23819858-2	chr11	23819358	23820358	+	756.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48888.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-65786341-2	chr11	65785841	65786841	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316368, intron 1 of 10)	intron (NM_001316368, intron 1 of 10)	2018.0	NM_009157	26398.0	Mm.412922	NM_009157	ENSMUSG00000033352	Map2k4	JNKK1|MEK4|MKK4|PRKMK4|Sek1|Serk1	mitogen-activated protein kinase kinase 4	protein-coding	0.0	0.0	0.0	1.5	2.5	0.0
Merged-chr10-56401384-2	chr10	56400884	56401884	+	756.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	24084.0	NM_010288	14609.0	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11016750-3	chr8	11016250	11017250	+	756.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046017, intron 1 of 4)	PB1D10|SINE|Alu	-8320.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43525556-2	chr7	43525056	43526056	+	756.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	7615.0	NM_001111058	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19210873-4	chr7	19210366	19211366	+	756.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1672.0	NM_175668	319197.0	Mm.135984	NM_175668	ENSMUSG00000044317	Gpr4	-	G protein-coupled receptor 4	protein-coding	0.0	0.0	0.5	0.0	5.5	0.0
Merged-chr7-100492570-2	chr7	100492070	100493070	+	756.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011671)	promoter-TSS (NM_011671)	-788.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.0	3.5	0.0	1.5	0.0	0.0
Merged-chr17-35197258-3	chr17	35196731	35197731	+	756.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008518)	TTS (NM_008518)	2259.0	NR_105939	102465588.0		NR_105939	ENSMUSG00000098291	Mir6973a	Gm27967|mmu-mir-6973a	microRNA 6973a	ncRNA	7.0	0.5	0.0	0.0	9.5	0.5
Merged-chr15-36649296-2	chr15	36648796	36649796	+	756.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-40323.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8709915-2	chr15	8709415	8710415	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_148938, intron 1 of 9)	intron (NM_148938, intron 1 of 9)	892.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27020245-3	chr17	27019901	27020901	+	756.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_149749, exon 7 of 7)	non-coding (NR_149749, exon 7 of 7)	2366.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0.0	0.0	0.0	1.5	0.0	2.5
Merged-chr2-27775467-2	chr2	27774967	27775967	+	756.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64884.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105613227-2	chr8	105612727	105613727	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081241, intron 1 of 21)	intron (NM_001081241, intron 1 of 21)	-2239.0	NR_035492	100316712.0		NR_035492	ENSMUSG00000089432	Mir1966	mir-1966|mmu-mir-1966	microRNA 1966	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61686048-2	chr14	61685548	61686548	+	756.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3675.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154732937-2	chr2	154732436	154733436	+	756.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58174.0	NM_001139512	19383.0	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	0.0	0.0	0.0	0.0	1.0	2.5
Merged-chr5-5381423-5	chr5	5381067	5382067	+	756.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1316.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7937800-1	chr10	7937300	7938300	+	756.0	f0_balb.idr	intron (NM_138667, intron 1 of 6)	intron (NM_138667, intron 1 of 6)	15265.0	NM_001359534	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32112644-2	chr19	32112144	32113144	+	756.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9504.0	NM_018830	54447.0	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50929698-2	chr14	50929193	50930193	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033271, intron 2 of 6)	intron (NM_001033271, intron 2 of 6)	1156.0	NM_001310506	219024.0	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161|Pip4p1	transmembrane protein 55b	protein-coding	30.5	27.5	52.5	47.0	66.5	51.0
Merged-chr1-36470319-2	chr1	36469819	36470819	+	756.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1278.0	NM_033570	94220.0	Mm.422638	NM_033570	ENSMUSG00000037408	Cnnm4	5430430O18Rik|Acdp4	cyclin M4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-72665238-2	chr12	72664728	72665728	+	756.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_025522)	promoter-TSS (NM_025522)	-400.0	NM_025522	66375.0	Mm.289653	NM_025522	ENSMUSG00000021094	Dhrs7	2310016E22Rik|5730564L20Rik|AW061210|Retdsr4|Retsdr4	dehydrogenase/reductase (SDR family) member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55527824-3	chr13	55527278	55528278	+	755.950012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013739, intron 1 of 4)	intron (NM_013739, intron 1 of 4)	760.0	NM_013739	27261.0	Mm.33910	NM_013739	ENSMUSG00000035711	Dok3	AI450713|Dokl	docking protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78350379-2	chr15	78349908	78350908	+	755.900024	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007780, exon 14 of 14)	3' UTR (NM_007780, exon 14 of 14)	1809.0	NR_106137	102465776.0		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	6.0	10.5	1.0	0.0	14.5	2.5
Merged-chr18-84294309-4	chr18	84293780	84294780	+	755.895813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 8 of 8)	intron (NM_001033341, intron 8 of 8)	206122.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116726302-3	chr6	116725831	116726831	+	755.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57E1|LTR|ERV1	-9573.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43737698-3	chr5	43737226	43738226	+	755.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359906, intron 36 of 37)	intron (NM_001359906, intron 36 of 37)	44423.0	NM_001159963	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	15.0	8.5	8.5	98.0	84.5	107.5
Merged-chr5-123724305-2	chr5	123723805	123724805	+	755.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3261.0	NM_027494	70650.0	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	3.5	4.5	1.0	2.0	0.0	0.5
Merged-chr6-97399258-2	chr6	97398758	97399758	+	755.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	60028.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111678603-2	chr12	111678103	111679103	+	755.833313	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001099792, exon 2 of 4)	5' UTR (NM_001099792, exon 2 of 4)	498.0	NM_177374	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101374320-3	chr7	101373807	101374807	+	755.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 3 of 33)	intron (NM_001040111, intron 3 of 33)	-3815.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	5.0	29.5	18.0	5.0	8.5	22.0
Merged-chr19-51227940-3	chr19	51227436	51228436	+	755.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-549290.0	NM_001290356	58178.0	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10199002-4	chr19	10198499	10199499	+	755.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001271615)	TTS (NM_001271615)	4944.0	NM_001271615	14156.0	Mm.2952	NM_007999	ENSMUSG00000024742	Fen1	AW538437|FEN-1	flap structure specific endonuclease 1	protein-coding	3.0	0.0	2.0	3.0	0.0	2.0
Merged-chr6-47799306-3	chr6	47798823	47799823	+	755.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009787, exon 8 of 10)	exon (NM_009787, exon 8 of 10)	4329.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	0.0	0.0	2.5	0.0	0.0	2.5
Merged-chr5-18006557-3	chr5	18006049	18007049	+	755.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 5 of 7)	intron (NM_001081143, intron 5 of 7)	43979.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14941296-2	chr8	14940781	14941781	+	755.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037736, intron 8 of 27)	intron (NM_001037736, intron 8 of 27)	29618.0	NM_001037736	234094.0	Mm.240298	NM_172751	ENSMUSG00000071176	Arhgef10	6430549H08Rik|mKIAA0294	Rho guanine nucleotide exchange factor (GEF) 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121009672-4	chr5	121009158	121010158	+	755.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011286)	promoter-TSS (NM_011286)	-120.0	NM_011286	19894.0	Mm.181166	NM_011286	ENSMUSG00000029608	Rph3a	2900002P20Rik|AU022689|AW108370	rabphilin 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-99119158-2	chr4	99118658	99119658	+	755.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_026082, intron 1 of 47)	intron (NM_026082, intron 1 of 47)	1757.0	NM_001290636	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	0.0	1.0	1.5	0.0	0.0	0.5
Merged-chr12-75765975-4	chr12	75765484	75766484	+	755.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30255.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145885968-2	chr2	145885498	145886498	+	755.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028724, exon 13 of 13)	3' UTR (NM_028724, exon 13 of 13)	-17243.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	26.5	14.0	25.5	23.5	44.0	12.0
Merged-chr7-88282923-2	chr7	88282408	88283408	+	755.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_009982, intron 2 of 6)	intron (NM_009982, intron 2 of 6)	4823.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	8.0	28.5	10.5	14.5	13.5	10.5
Merged-chr7-126145538-2	chr7	126145002	126146002	+	755.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 8 of 23)	RMER15|LTR|ERVL	54999.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116993894-2	chr4	116993342	116994342	+	755.708374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009478, intron 1 of 9)	intron (NM_009478, intron 1 of 9)	571.0	NM_009478	22275.0	Mm.46484	NM_009478	ENSMUSG00000028684	Urod	AI323803|UPD|Uro-d	uroporphyrinogen decarboxylase	protein-coding	1.0	0.0	1.5	0.0	0.5	0.5
Merged-chr9-118726721-4	chr9	118726291	118727291	+	755.700012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	15099.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	8.0	10.0	1.0	0.0	6.5	3.5
Merged-chr14-16373980-3	chr14	16373481	16374481	+	755.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009409, intron 1 of 35)	intron (NM_009409, intron 1 of 35)	8775.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	1.0	13.5	3.0	4.0	30.5	9.0
Merged-chr13-9011802-1	chr13	9011302	9012302	+	755.666687	f0_balb.idr	Intergenic	Intergenic	-15790.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-26376885-3	chr10	26376382	26377382	+	755.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1663.0	NM_172787	237339.0	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	L3MBTL3 histone methyl-lysine binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44391648-3	chr9	44391127	44392127	+	755.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021395, exon 26 of 26)	3' UTR (NM_021395, exon 26 of 26)	-5300.0	NM_001293631	14385.0	Mm.30087	NM_008063	ENSMUSG00000032114	Slc37a4	100043178|G6PT|G6pt1|GSD-1b|mG6PT	solute carrier family 37 (glucose-6-phosphate transporter), member 4	protein-coding	1.5	0.0	0.0	0.0	7.0	1.5
Merged-chr11-64615353-3	chr11	64614862	64615862	+	755.611084	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-178688.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	3.0	8.5	12.5	15.5	3.5	6.5
Merged-chr18-67366028-3	chr18	67365528	67366528	+	755.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007702, intron 3 of 4)	L2|LINE|L2	-21925.0	NR_033214	338360.0	Mm.441590	NR_033214	ENSMUSG00000046415	B430212C06Rik	-	RIKEN cDNA B430212C06 gene	ncRNA	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60224829-2	chr11	60224329	60225329	+	755.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2248.0	NM_001358315	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9246556-3	chr4	9246071	9247071	+	755.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12A|LTR|ERVK	-22722.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-106235496-2	chr7	106234996	106235996	+	755.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20156.0	NM_029000	74558.0	Mm.458429	NM_029000	ENSMUSG00000045868	Gvin1	9130002C22Rik|9830104F22Rik|Iigs1|VLIG|VLIG-1	GTPase, very large interferon inducible 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-41474855-2	chr9	41474329	41475329	+	755.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131931)	promoter-TSS (NR_131931)	-64.0	NR_131931	73144.0	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	0.0	1.5	1.0	2.0	0.0	0.0
Merged-chr18-82822836-2	chr18	82822336	82823336	+	755.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAAA)n|Simple_repeat|Simple_repeat	-33061.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81029453-2	chr13	81028953	81029953	+	755.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_015587, intron 1 of 1)	intron (NR_015587, intron 1 of 1)	65379.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166804682-2	chr2	166804182	166805182	+	755.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085495)	promoter-TSS (NM_001085495)	-899.0	NM_001085495	99371.0	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-24519442-3	chr8	24518966	24519966	+	755.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34480.0	NR_035483									3.5	3.5	9.0	6.5	10.0	10.5
Merged-chr12-112868700-2	chr12	112868200	112869200	+	755.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7784.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70225781-2	chr11	70225281	70226281	+	755.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007528, exon 9 of 9)	3' UTR (NM_007528, exon 9 of 9)	4017.0	NM_007528	12029.0	Mm.12930	NM_007528	ENSMUSG00000000317	Bcl6b	Bazf	B cell CLL/lymphoma 6, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70739103-2	chr17	70738603	70739603	+	755.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	B1_Mus2|SINE|Alu	107674.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.0	0.5	1.0	1.5	1.0	0.0
Merged-chr17-57293009-2	chr17	57292509	57293509	+	755.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 1 of 25)	MLT1F1|LTR|ERVL-MaLR	13909.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30623935-2	chr13	30623435	30624435	+	755.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045975, exon 4 of 4)	non-coding (NR_045975, exon 4 of 4)	8892.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5486031-2	chr19	5485531	5486531	+	755.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153768, exon 6 of 16)	non-coding (NR_153768, exon 6 of 16)	2348.0	NM_027877	71711.0	Mm.27697	NM_027877	ENSMUSG00000024906	Mus81	1200008A18Rik|AI182501|AW045863	MUS81 structure-specific endonuclease subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80236467-2	chr18	80235968	80236968	+	755.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136181, intron 2 of 4)	intron (NM_001136181, intron 2 of 4)	10634.0	NM_001136181	66255.0	Mm.272341	NM_001136181	ENSMUSG00000078963	Hsbp1l1	1810005K13Rik	heat shock factor binding protein 1-like 1	protein-coding	0.5	0.0	1.0	2.0	2.0	3.5
Merged-chr2-181822438-2	chr2	181821938	181822938	+	755.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171615, intron 20 of 22)	intron (NM_001171615, intron 20 of 22)	-15416.0	NM_153594	245867.0	Mm.491085	NM_153594	ENSMUSG00000027589	Pcmtd2	5330414D10Rik|AI314201	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135309295-2	chr4	135308795	135309795	+	755.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36535.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123994727-2	chr5	123994227	123995227	+	755.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_145070, exon 8 of 32)	exon (NM_145070, exon 8 of 32)	-2125.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103971038-2	chr11	103970538	103971538	+	755.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007477, intron 2 of 4)	intron (NM_007477, intron 2 of 4)	4167.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-56641965-2	chr13	56641465	56642465	+	755.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32379.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22807657-2	chr16	22807157	22808157	+	755.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009967, intron 1 of 2)	intron (NM_009967, intron 1 of 2)	3753.0	NM_009967	12970.0	Mm.6253	NM_009967	ENSMUSG00000033501	Crygs	AI327013|Opj|rncat	crystallin, gamma S	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-31939323-1	chr18	31938823	31939823	+	755.5	f0_balb.idr	intron (NM_144862, intron 1 of 9)	CpG	7816.0	NM_144862	225341.0	Mm.24551	NM_144862	ENSMUSG00000024395	Lims2	PINCH2	LIM and senescent cell antigen like domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133825770-2	chr4	133825259	133826259	+	755.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	48972.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	30.0	34.0	16.5	22.0	36.0	35.0
Merged-chr9-14833949-2	chr9	14833449	14834449	+	755.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001310728, exon 19 of 19)	3' UTR (NM_001310728, exon 19 of 19)	-26261.0	NM_001310734	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81421146-2	chr10	81420646	81421646	+	755.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 1 of 8)	intron (NM_026756, intron 1 of 8)	-4849.0	NR_106141	102465778.0		NR_106141	ENSMUSG00000105379	Mir1191b	mmu-mir-1191b	microRNA 1191b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97687995-2	chr7	97687495	97688495	+	755.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081267, exon 16 of 16)	3' UTR (NM_001081267, exon 16 of 16)	8472.0	NR_154552	102641859.0	Mm.211743	NR_154551		Rsf1os2	Gm15623	remodeling and spacing factor 1, opposite strand 2	ncRNA	4.0	1.0	14.5	11.0	6.5	8.5
Merged-chr9-118644358-2	chr9	118643858	118644858	+	755.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	37649.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	14.0	11.0	8.0	4.0	9.0	5.0
Merged-chr14-48199215-1	chr14	48198715	48199715	+	755.5	f0_balb.idr	intron (NR_003630, intron 1 of 2)	B4A|SINE|B4	499.0	NR_003630	624367.0	Mm.445185	NM_001037921	ENSMUSG00000021846	Gm6498	EG624367	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.0	0.5	2.0	1.5	6.0	1.0
Merged-chr15-35140002-1	chr15	35139502	35140502	+	755.5	f0_balb.idr	intron (NM_001357821, intron 1 of 11)	RMER17C-int|LTR|ERVK	15804.0	NM_001357821	56274.0	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-17217260-4	chr19	17216708	17217708	+	755.458313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181348, intron 19 of 19)	intron (NM_181348, intron 19 of 19)	122297.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	39.0	134.0	79.5	64.0	142.0	126.0
Merged-chr15-93274380-3	chr15	93273888	93274888	+	755.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346785, intron 1 of 7)	intron (NM_001346785, intron 1 of 7)	791.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44371969-4	chr10	44371480	44372480	+	755.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12304.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-41363598-3	chr3	41363170	41364170	+	755.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	129529.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0.0	5.5	6.0	10.5	6.0	13.0
Merged-chr16-21380894-4	chr16	21380407	21381407	+	755.412476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42211.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-49745169-3	chr2	49744667	49745667	+	755.400024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008449, intron 21 of 25)	intron (NM_008449, intron 21 of 25)	-42519.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-56168140-3	chr9	56167641	56168641	+	755.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-7071.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118495063-2	chr7	118494621	118495621	+	755.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3146.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	2.0	3.5	1.0	21.0	11.5	5.5
Merged-chr9-90116935-2	chr9	90116435	90117435	+	755.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2115.0	NM_024431	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-50962489-1	chr1	50961989	50962989	+	755.333313	f0_balb.idr	intron (NM_019790, intron 4 of 9)	intron (NM_019790, intron 4 of 9)	34966.0	NM_019790	56363.0	Mm.245154	NM_019790	ENSMUSG00000026109	Tmeff2	4832418D20Rik|7630402F16Rik|TR-2	transmembrane protein with EGF-like and two follistatin-like domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61176411-3	chr11	61175869	61176869	+	755.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1310.0	NM_001004143	216825.0	Mm.30602	NM_001004143	ENSMUSG00000042506	Usp22	AI427806	ubiquitin specific peptidase 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-59389321-3	chr19	59388823	59389823	+	755.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43543.0	NM_001033222	107368.0	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32965697-3	chr2	32965203	32966203	+	755.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	2402.0	NR_002898	104367.0	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	6.0	5.5	10.5	2.5	13.0	8.5
Merged-chr8-81345380-3	chr8	81344869	81345869	+	755.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024617, intron 1 of 24)	intron (NM_001024617, intron 1 of 24)	2807.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.0	12.0	2.5	14.5	25.5	12.5
Merged-chr2-73530048-3	chr2	73529535	73530535	+	755.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153138)	promoter-TSS (NM_153138)	-548.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101069632-3	chr4	101069182	101070182	+	755.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183024, intron 1 of 11)	CpG	644.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-61734425-3	chr2	61733918	61734918	+	755.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021526, intron 3 of 11)	intron (NM_021526, intron 3 of 11)	22724.0	NM_021526	59029.0	Mm.218198	NM_021526	ENSMUSG00000026914	Psmd14	2610312C03Rik|3200001M20Rik|AA986732|Pad1|Poh1|rpm11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-56064273-4	chr8	56063740	56064740	+	755.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080438, intron 5 of 9)	B4A|SINE|B4	123415.0	NM_080438	110304.0	Mm.307061	NM_080438	ENSMUSG00000038257	Glra3	-	glycine receptor, alpha 3 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36711191-3	chr18	36710672	36711672	+	755.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B3|LTR|ERVK	-15247.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	0.0	4.5	0.0	3.0	2.0	3.0
Merged-chr6-116007968-3	chr6	116007502	116008502	+	755.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12997.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118622113-2	chr9	118621613	118622613	+	755.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	15404.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122648834-2	chr10	122648334	122649334	+	755.25	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105839)	TTS (NR_105839)	495.0	NR_105839	102465223.0		NR_105839	ENSMUSG00000098522	Mir6412	Gm27364|mmu-mir-6412	microRNA 6412	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35171707-2	chr17	35171207	35172207	+	755.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_019467, intron 6 of 7)	intron (NM_019467, intron 6 of 7)	4345.0	NM_019467	11629.0	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-28419001-3	chr13	28418467	28419467	+	755.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	276483.0	NM_023746	28078.0	Mm.155058	NM_023746	ENSMUSG00000017064	Prl5a1	1600013P04Rik|D13Wsu14e|Ghd24|PLP-L|Prlpl	prolactin family 5, subfamily a, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122802736-2	chr10	122802236	122803236	+	755.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 3 of 9)	intron (NM_001110218, intron 3 of 9)	123421.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-68317160-3	chr15	68316652	68317652	+	755.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20358.0	NR_029534	387226.0		NR_029534	ENSMUSG00000065476	Mir30b	Mirn30b|mir-30b|mmu-mir-30b	microRNA 30b	ncRNA	3.5	2.5	1.0	3.5	2.5	1.0
Merged-chr11-62217840-3	chr11	62217336	62218336	+	755.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029936, intron 12 of 12)	intron (NM_001029936, intron 12 of 12)	-31148.0	NM_007413	11541.0	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108796217-2	chr3	108795717	108796717	+	755.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_011504, intron 17 of 18)	intron (NM_011504, intron 17 of 18)	44285.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27562286-2	chr2	27561786	27562786	+	755.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47139.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10940366-2	chr17	10939866	10940866	+	755.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317726, intron 1 of 6)	intron (NM_001317726, intron 1 of 6)	100007.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-92729787-2	chr7	92729287	92730287	+	755.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11672.0	NR_015510	666737.0	Mm.473620	NR_015510	ENSMUSG00000074024	4632427E13Rik	AU015482	RIKEN cDNA 4632427E13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-85393232-3	chr17	85392728	85393728	+	755.133301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028576, intron 4 of 10)	intron (NM_028576, intron 4 of 10)	225168.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-31135823-3	chr8	31135312	31136312	+	755.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14504.0	NM_144927	234138.0	Mm.349800	NM_144927	ENSMUSG00000031577	Tti2	-	TELO2 interacting protein 2	protein-coding	1.0	12.5	1.0	3.0	0.0	2.5
Merged-chr9-14273108-3	chr9	14272604	14273604	+	755.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-3197.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-75855340-3	chr12	75854847	75855847	+	755.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005510, intron 2 of 115)	intron (NM_001005510, intron 2 of 115)	37029.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-98157305-3	chr3	98156790	98157790	+	755.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3344.0	NM_027665	71078.0	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56161289-2	chr17	56160789	56161789	+	755.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1202.0	NM_025566	66443.0	Mm.2312	NM_025566	ENSMUSG00000044469	Tnfaip8l1	2600017J23Rik|TIPE1	tumor necrosis factor, alpha-induced protein 8-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105000862-4	chr3	105000358	105001358	+	755.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39149.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-82980560-4	chr9	82980074	82981074	+	755.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5085.0	NM_001081216	83946.0	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135940564-1	chr5	135940064	135941064	+	755.0	f1_balb.idr	Intergenic	Intergenic	-5923.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	2.5	3.0	0.0	0.0	0.0	0.0
Merged-chr8-13213579-4	chr8	13213018	13214018	+	755.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12894.0	NM_025768	66790.0	Mm.34901	NM_025768	ENSMUSG00000038515	Grtp1	5430401C05Rik|C81211|Tbc1d6	GH regulated TBC protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161951214-2	chr1	161950713	161951713	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204904, intron 5 of 6)	intron (NM_001204904, intron 5 of 6)	17935.0	NM_001204905	75368.0	Mm.108728	NM_001204904	ENSMUSG00000086277	4930558K02Rik	-	RIKEN cDNA 4930558K02 gene	protein-coding	12.0	4.0	3.0	16.5	9.0	11.5
Merged-chr3-119745950-1	chr3	119745450	119746450	+	755.0	f0_balb.idr	intron (NM_001310711, intron 7 of 13)	intron (NM_001310711, intron 7 of 13)	37438.0	NM_001310711	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	5.5	0.0	2.0	0.0	0.0	0.0
Merged-chr6-146633801-3	chr6	146633317	146634317	+	755.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026281, intron 1 of 11)	intron (NM_026281, intron 1 of 11)	775.0	NM_026281	67623.0	Mm.278037	NM_026281	ENSMUSG00000040234	Tm7sf3	2010003B14Rik|NARP1	transmembrane 7 superfamily member 3	protein-coding	30.5	37.5	43.5	34.0	74.0	63.0
Merged-chr5-99329207-2	chr5	99328707	99329707	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-76280.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59349411-2	chr2	59348911	59349911	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 19 of 20)	intron (NM_175464, intron 19 of 20)	37271.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78030518-2	chr11	78030018	78031018	+	755.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_174852)	TTS (NM_174852)	-1795.0	NM_183286	70451.0	Mm.390342	NM_183286	ENSMUSG00000020834	Dhrs13	2610209N15Rik	dehydrogenase/reductase (SDR family) member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4060939-2	chr7	4060439	4061439	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178611, intron 1 of 6)	MMETn-int|LTR|ERVK	2265.0	NM_001302677	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16348239-2	chr19	16347739	16348739	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 5 of 6)	ORR1A2|LTR|ERVL-MaLR	-33235.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-9706734-2	chr10	9706235	9707235	+	755.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22013.0	NR_038036	620417.0	Mm.378085	NR_038036	ENSMUSG00000111901	Gm6150	-	predicted gene 6150	ncRNA	1.0	5.5	3.5	8.5	30.0	3.0
Merged-chr10-81492866-2	chr10	81492366	81493366	+	755.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_134009, exon 4 of 14)	exon (NM_134009, exon 4 of 14)	3497.0	NM_134009	103425.0	Mm.302791	NM_134009	ENSMUSG00000020238	Ncln	3100002P13Rik|AW120537	nicalin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76654575-2	chr15	76654075	76655075	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019396, intron 2 of 4)	intron (NM_019396, intron 2 of 4)	2319.0	NM_001357882	54151.0	Mm.247752	NM_019396	ENSMUSG00000053929	Cyhr1	1110031M01Rik|AU042374|Chrp	cysteine and histidine rich 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-109918972-2	chr10	109918472	109919472	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081035, intron 1 of 38)	Lx3A|LINE|L1	81247.0	NM_001081035	260315.0	Mm.225050	NM_177797	ENSMUSG00000020181	Nav3	4732483H20Rik|9630020C08Rik|POMFIL1|Pomfil1p|mKIAA0938|unc53H3	neuron navigator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180250441-2	chr2	180249941	180250941	+	755.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6938.0	NM_025587	66481.0	Mm.289669	NM_025587	ENSMUSG00000039001	Rps21	1810049N11Rik|2410030A14Rik	ribosomal protein S21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60595570-2	chr18	60595070	60596070	+	755.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177340, exon 3 of 3)	3' UTR (NM_177340, exon 3 of 3)	-3854.0	NM_133363	170947.0	Mm.159257	NM_133363	ENSMUSG00000049173	Myoz3	4833419K08Rik|Fatz-3	myozenin 3	protein-coding	1.0	0.0	1.5	0.0	2.5	3.5
Merged-chr1-160268551-1	chr1	160268051	160269051	+	755.0	f1_c57bl6.idr	intron (NM_001038621, intron 2 of 8)	intron (NM_001038621, intron 2 of 8)	27421.0	NR_035448	100316784.0		NR_035448	ENSMUSG00000089204	Mir1927	mmu-mir-1927	microRNA 1927	ncRNA	4.0	1.5	3.5	4.5	5.5	7.5
Merged-chr11-97469068-3	chr11	97468541	97469541	+	755.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021493, intron 11 of 18)	intron (NM_021493, intron 11 of 18)	18881.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0.0	9.5	1.5	0.0	3.0	0.5
Merged-chr9-99488991-4	chr9	99488480	99489480	+	755.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028768, intron 18 of 21)	intron (NM_028768, intron 18 of 21)	18559.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	4.0	14.0	1.0	3.5	1.0	16.0
Merged-chr4-141742107-1	chr4	141741607	141742607	+	755.0	f0_balb.idr	Intergenic	Intergenic	-4568.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	1.0	6.0	0.5	6.5	14.0	9.5
Merged-chr17-77753912-2	chr17	77753412	77754412	+	755.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B4|LTR|ERVL	-446336.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-44829481-2	chr18	44828981	44829981	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163013, intron 1 of 29)	intron (NM_001163013, intron 1 of 29)	816.0	NM_001163013	240255.0	Mm.244482	NM_001163013	ENSMUSG00000034653	Ythdc2	3010002F02Rik|BC037178	YTH domain containing 2	protein-coding	5.5	25.5	17.0	8.5	24.0	16.5
Merged-chr2-18219718-2	chr2	18219218	18220218	+	755.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007869, exon 11 of 12)	exon (NM_007869, exon 11 of 12)	155133.0	NM_001252561	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75501721-3	chr18	75501218	75502218	+	755.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 9 of 11)	intron (NM_201354, intron 9 of 11)	-12927.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	17.0	21.0	12.5	4.0	26.0	16.0
Merged-chr7-132237382-2	chr7	132236882	132237882	+	755.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001360768, exon 8 of 8)	3' UTR (NM_001360768, exon 8 of 8)	-78282.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87795754-2	chr3	87795254	87796254	+	755.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033124)	promoter-TSS (NM_001033124)	-592.0	NM_001033124	18211.0	Mm.80682	NM_001033124	ENSMUSG00000028072	Ntrk1	C80751|Tkr|TrkA|trk	neurotrophic tyrosine kinase, receptor, type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36767208-2	chr18	36766708	36767708	+	755.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173383)	promoter-TSS (NM_173383)	-994.0	NM_173383	213236.0	Mm.234464	NM_173383	ENSMUSG00000044595	Dnd1	BC034897|RBMS4|Ter	DND microRNA-mediated repression inhibitor 1	protein-coding	0.0	3.0	5.0	0.0	2.0	3.5
Merged-chr14-103469296-2	chr14	103468801	103469801	+	755.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-44040.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142316878-1	chr7	142316378	142317378	+	755.0	f1_balb.idr	Intergenic	Intergenic	13376.0	NM_015809	50775.0	Mm.389990	NM_015809	ENSMUSG00000045236	Krtap5-4	-	keratin associated protein 5-4	protein-coding	0.0	2.0	2.5	1.0	0.0	10.0
Merged-chr3-84820856-2	chr3	84820356	84821356	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177773, intron 1 of 13)	ORR1D1|LTR|ERVL-MaLR	5279.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	22.5	8.0	18.0	20.0	22.0	10.0
Merged-chr9-111064323-2	chr9	111063839	111064839	+	755.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-6821.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	8.5	6.0	0.0	6.5	10.5	5.5
Merged-chr11-4639790-2	chr11	4639290	4640290	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029291, intron 1 of 19)	ID4_|SINE|ID	1997.0	NM_029291	75452.0	Mm.439906	NM_029291	ENSMUSG00000020412	Ascc2	1700011I11Rik|2610034L15Rik|AI482016|ASC1p100|AW046480	activating signal cointegrator 1 complex subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180696888-2	chr2	180696388	180697388	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291432, intron 1 of 5)	intron (NM_001291432, intron 1 of 5)	-4840.0	NR_111965	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77800199-2	chr11	77799699	77800699	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011586, intron 1 of 39)	intron (NM_011586, intron 1 of 39)	-1099.0	NM_001291214	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-50037295-2	chr18	50036790	50037790	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360935, intron 1 of 1)	intron (NM_001360935, intron 1 of 1)	6306.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	63.0	57.5	44.0	40.5	87.5	35.5
Merged-chr4-3632311-2	chr4	3631811	3632811	+	755.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24195.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	2.0	0.5	1.0	0.0	0.0	3.0
Merged-chr12-85289059-2	chr12	85288559	85289559	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172414, intron 1 of 2)	intron (NM_172414, intron 1 of 2)	468.0	NM_172414	72350.0	Mm.158810	NM_172414	ENSMUSG00000045064	Zc2hc1c	2810002I04Rik|AV046379|Fam164c	zinc finger, C2HC-type containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-33317813-2	chr12	33317313	33318313	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033436, intron 1 of 7)	intron (NM_001033436, intron 1 of 7)	15298.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.0	1.0	0.0	1.5	1.0	0.0
Merged-chr1-195038149-1	chr1	195037649	195038649	+	755.0	f0_balb.idr	TTS (NR_015566)	TTS (NR_015566)	602.0	NR_029745	387224.0		NR_029745	ENSMUSG00000065548	Mir29c	Mirn29c|mir-29c|mmu-mir-29c	microRNA 29c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67030260-2	chr10	67029760	67030760	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110511, intron 3 of 6)	intron (NR_110511, intron 3 of 6)	25185.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-28723197-1	chr6	28722697	28723697	+	755.0	f0_balb.idr	intron (NM_019776, intron 13 of 23)	intron (NM_019776, intron 13 of 23)	108550.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7765367-2	chr9	7764867	7765867	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152989, intron 1 of 5)	intron (NR_152989, intron 1 of 5)	1202.0	NR_152989	71929.0	Mm.283293	NM_133739	ENSMUSG00000050912	Tmem123	2310075C12Rik	transmembrane protein 123	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122378496-2	chr5	122377995	122378995	+	755.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_024216, exon 3 of 8)	exon (NM_024216, exon 3 of 8)	5987.0	NM_024216	68080.0	Mm.266328	NM_024216	ENSMUSG00000029464	Gpn3	A930018B01Rik|Atpbd1c|D5Ertd708e	GPN-loop GTPase 3	protein-coding	0.0	0.0	4.0	0.0	0.0	0.0
Merged-chr16-84814718-4	chr16	84814206	84815206	+	754.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023844, intron 5 of 9)	intron (NM_023844, intron 5 of 9)	20270.0	NM_001358500	11957.0	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	9.5	10.5	0.0	4.0	6.5	8.0
Merged-chr7-81176610-3	chr7	81176127	81177127	+	754.950012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-37177.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-119417552-4	chr6	119417055	119418055	+	754.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197985)	promoter-TSS (NM_197985)	-27.0	NM_197985	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-51384179-4	chr6	51383736	51384736	+	754.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110455, intron 1 of 2)	intron (NR_110455, intron 1 of 2)	4526.0	NR_110455	625167.0	Mm.389772	NR_110455	ENSMUSG00000107660	Gm6559	EG625167	predicted gene 6559	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74748938-4	chr1	74748431	74749431	+	754.854187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153744)	promoter-TSS (NM_153744)	24.0	NM_153744	241113.0	Mm.166501	NM_153744	ENSMUSG00000006542	Prkag3	AMPKg3L|AMPKg3S|Amkg3|Ampkg3	protein kinase, AMP-activated, gamma 3 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-92530127-2	chr2	92529627	92530627	+	754.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-62079.0	NR_106080	102466819.0		NR_106080	ENSMUSG00000099223	Mir7221	Gm27378|mmu-mir-7221	microRNA 7221	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31294529-2	chr17	31294029	31295029	+	754.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153062)	promoter-TSS (NM_153062)	-954.0	NM_153062	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34974029-2	chr5	34973529	34974529	+	754.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_173402, intron 2 of 16)	L1MB3|LINE|L1	24581.0	NM_173402	71729.0	Mm.196208	NM_173402	ENSMUSG00000029101	Rgs12	1200016K18Rik|4632412M04Rik|AI481290|E130309H11	regulator of G-protein signaling 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95565742-2	chr10	95565242	95566242	+	754.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1596.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-85597174-2	chr9	85596674	85597674	+	754.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	152160.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	1.5	0.0	1.0	1.5	0.0	1.0
Merged-chr4-128657044-2	chr4	128656544	128657544	+	754.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	2342.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-86881092-3	chr7	86880601	86881601	+	754.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-34248.0	NM_001105189	637896.0	Mm.389957	NM_001105189	ENSMUSG00000091962	Vmn2r78	-	vomeronasal 2, receptor 78	protein-coding	2.5	10.5	4.5	0.0	7.5	2.5
Merged-chr4-62369340-3	chr4	62368830	62369830	+	754.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175090, intron 1 of 4)	intron (NM_175090, intron 1 of 4)	8629.0	NM_175090	20529.0	Mm.248637	NM_175090	ENSMUSG00000066150	Slc31a1	4930445G01Rik|AI787263|AU016967|Ctr1	solute carrier family 31, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-53461554-3	chr10	53461048	53462048	+	754.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51666.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126825913-2	chr8	126825413	126826413	+	754.825012	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CCCCCA)n|Simple_repeat|Simple_repeat	-23107.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115184085-5	chr11	115183618	115184618	+	754.799988	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025400, intron 4 of 6)	B4|SINE|B4	3198.0	NM_025400	66176.0	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	0.5	9.5	3.0	0.0	0.0	2.0
Merged-chr2-181487764-5	chr2	181487318	181488318	+	754.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5388.0	NM_183181	241850.0	Mm.87455	NM_183181	ENSMUSG00000055882	Abhd16b	1700095H12	abhydrolase domain containing 16B	protein-coding	17.5	30.5	19.5	8.0	24.0	20.5
Merged-chr13-37608016-2	chr13	37607516	37608516	+	754.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-218022.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129491870-2	chr2	129491383	129492383	+	754.791626	f0_balb.idr|f1_balb.idr	intron (NM_177653, intron 1 of 6)	RMER13A2|LTR|ERVK	44719.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	12.0	26.5	22.0	26.0	71.5	47.5
Merged-chr14-21985426-3	chr14	21984973	21985973	+	754.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145459, exon 3 of 3)	exon (NM_145459, exon 3 of 3)	4128.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-43352693-3	chr11	43352231	43353231	+	754.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A|LTR|ERVK	21730.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52507676-3	chr13	52507175	52508175	+	754.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001024474, exon 2 of 2)	exon (NM_001024474, exon 2 of 2)	23161.0	NM_001024474	68203.0	Mm.29362	NM_001024474	ENSMUSG00000047842	Diras2	2900052J15Rik|AI414999	DIRAS family, GTP-binding RAS-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78627390-3	chr11	78626867	78627867	+	754.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008702, intron 1 of 10)	intron (NM_008702, intron 1 of 10)	70058.0	NM_008702	18099.0	Mm.9001	NM_008702	ENSMUSG00000017376	Nlk	AI194375	nemo like kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-38885746-3	chr3	38885288	38886288	+	754.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1152.0	NM_183221	329628.0	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35267277-2	chr12	35266806	35267806	+	754.75	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-72409.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	3.5	2.0	7.0	31.5	37.0	32.0
Merged-chr11-62554551-2	chr11	62554051	62555051	+	754.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	2820.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40811565-2	chr9	40811101	40812101	+	754.75	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	10328.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	10.0	19.5	9.0	2.0	13.0	7.5
Merged-chr2-14703316-2	chr2	14702816	14703816	+	754.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_023116, intron 2 of 13)	intron (NM_023116, intron 2 of 13)	-17326.0	NR_028497	625342.0	Mm.484784	NR_028497		Gm13315	-	lactate dehydrogenase A pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102684915-2	chr12	102684410	102685410	+	754.75	f1_balb.idr|f1_c57bl6.idr	TTS (NR_035457)	TTS (NR_035457)	110.0	NR_035457	100316812.0		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125600342-4	chr6	125599843	125600843	+	754.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 12 of 51)	intron (NM_011708, intron 12 of 51)	47395.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-125119982-2	chr4	125119482	125120482	+	754.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_153159, exon 6 of 6)	exon (NM_153159, exon 6 of 6)	7899.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-49420740-4	chr2	49420305	49421305	+	754.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30681.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21159455-2	chr13	21158955	21159955	+	754.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16400.0	NM_146534	258527.0	Mm.271440	NM_146534	ENSMUSG00000045474	Olfr1368	MOR256-15	olfactory receptor 1368	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81601814-2	chr10	81601314	81602314	+	754.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346695)	promoter-TSS (NM_001346695)	-914.0	NM_001346695	114606.0	Mm.206764	NM_053254	ENSMUSG00000034758	Tle6	1810057E06Rik|Grg6	transducin-like enhancer of split 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64751689-2	chr7	64751218	64752218	+	754.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291166, intron 14 of 14)	intron (NM_001291166, intron 14 of 14)	121322.0	NM_023239	66647.0	Mm.19944	NM_023239	ENSMUSG00000070520	Nsmce3	5730494G16Rik|AI642138|BB044375|HCA4|Mageg1|Ndnl2|mage-g1	NSE3 homolog, SMC5-SMC6 complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17567328-2	chr17	17566828	17567828	+	754.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 7 of 17)	intron (NM_172827, intron 7 of 17)	57161.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	4.5	9.0	7.0	14.5	6.5	6.0
Merged-chr7-25178390-3	chr7	25177896	25178896	+	754.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23327.0	NR_045848	434147.0	Mm.59171	NM_001033781	ENSMUSG00000074274	D930028M14Rik	EG434147	RIKEN cDNA D930028M14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108742880-3	chr8	108742372	108743372	+	754.716675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	28228.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63102403-3	chr14	63101951	63102951	+	754.714294	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-20011.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139944111-4	chr7	139943568	139944568	+	754.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009482, exon 1 of 2)	exon (NM_009482, exon 1 of 2)	212.0	NM_009482	22286.0	Mm.10205	NM_009482	ENSMUSG00000047751	Utf1	AI505934	undifferentiated embryonic cell transcription factor 1	protein-coding	1.0	0.0	0.5	0.0	0.0	0.5
Merged-chr2-157838901-3	chr2	157838399	157839399	+	754.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025680, intron 11 of 15)	intron (NM_025680, intron 11 of 15)	-75754.0	NM_198627	277432.0	Mm.441156	NM_198627	ENSMUSG00000037843	Vstm2l	Gm691	V-set and transmembrane domain containing 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137652632-3	chr5	137652130	137653130	+	754.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303271, intron 11 of 12)	intron (NM_001303271, intron 11 of 12)	-6916.0	NM_010571	16369.0	Mm.24486	NM_010571	ENSMUSG00000047182	Irs3	AA408304	insulin receptor substrate 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182868626-2	chr1	182868126	182869126	+	754.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356462, intron 5 of 8)	intron (NM_001356462, intron 5 of 8)	-86162.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134070942-3	chr1	134070474	134071474	+	754.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8181.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16048086-3	chr19	16047640	16048640	+	754.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	63065.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	11.5	29.5	27.0	3.5	7.0	19.0
Merged-chr18-39542990-3	chr18	39542493	39543493	+	754.666626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-55748.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-61553480-2	chr3	61552980	61553980	+	754.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	188973.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88439772-3	chr17	88439259	88440259	+	754.633362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355743)	promoter-TSS (NM_001355743)	-945.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr15-3213934-3	chr15	3213435	3214435	+	754.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56832.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115579172-3	chr11	115578674	115579674	+	754.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002929, intron 11 of 18)	intron (NM_001002929, intron 11 of 18)	14730.0	NM_001002929	445007.0	Mm.4379	NM_001002929	ENSMUSG00000020739	Nup85	Pcnt1|frount	nucleoporin 85	protein-coding	21.5	48.5	28.0	4.0	14.0	8.0
Merged-chr15-56695617-3	chr15	56695092	56696092	+	754.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1046.0	NM_008216	15117.0	Mm.5148	NM_008216	ENSMUSG00000022367	Has2	-	hyaluronan synthase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-34314605-3	chr14	34314108	34315108	+	754.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008133, intron 1 of 12)	intron (NM_008133, intron 1 of 12)	3881.0	NM_008133	14661.0	Mm.10600	NM_008133	ENSMUSG00000021794	Glud1	AI118167|Gdh-X|Glud|Gludl	glutamate dehydrogenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125330272-3	chr5	125329766	125330766	+	754.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	10828.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	2.5	12.0	6.5	3.5	10.0	8.5
Merged-chr6-99026310-3	chr6	99025807	99026807	+	754.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 4 of 17)	intron (NM_001197321, intron 4 of 17)	1991.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78340197-4	chr15	78339671	78340671	+	754.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358854, intron 5 of 14)	intron (NM_001358854, intron 5 of 14)	-8428.0	NR_106138	102466845.0		NR_106138	ENSMUSG00000099059	Mir7676-2	Gm27790|mmu-mir-7676-2	microRNA 7676-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107842581-3	chr13	107842093	107843093	+	754.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	47471.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	2.5	6.0	4.5	0.5	6.5	3.5
Merged-chr8-25038672-4	chr8	25038266	25039266	+	754.512512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_031257)	TTS (NM_031257)	196.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	0.0	0.0	2.0	6.0	2.0	0.0
Merged-chr15-50654261-2	chr15	50653761	50654761	+	754.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_032000)	TTS (NM_032000)	234788.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4249307-1	chr8	4248807	4249807	+	754.5	f1_balb.idr	exon (NM_001195258, exon 2 of 7)	exon (NM_001195258, exon 2 of 7)	1093.0	NM_001195258	100044509.0	Mm.439193	NM_001195258	ENSMUSG00000089736	Tgfbr3l	Gm14378	transforming growth factor, beta receptor III-like	protein-coding	2.0	0.0	0.0	3.0	0.0	0.5
Merged-chr8-105279664-2	chr8	105279164	105280164	+	754.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001166394)	TTS (NM_001166394)	3217.0	NM_030152	78688.0	Mm.475715	NM_030152	ENSMUSG00000014776	Nol3	ARC|B430311C09Rik|MYC|NOP|Nop30	nucleolar protein 3 (apoptosis repressor with CARD domain)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5806884-2	chr13	5806384	5807384	+	754.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	51208.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78449745-2	chr15	78449245	78450245	+	754.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355601, intron 10 of 17)	intron (NM_001355601, intron 10 of 17)	18889.0	NM_001355601	71753.0	Mm.34056	NM_027902	ENSMUSG00000016942	Tmprss6	1300008A22Rik	transmembrane serine protease 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-167343033-2	chr1	167342533	167343533	+	754.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-6958.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32646895-2	chr2	32646395	32647395	+	754.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007932, exon 1 of 15)	5' UTR (NM_007932, exon 1 of 15)	300.0	NM_001146348	13805.0	Mm.225297	NM_007932	ENSMUSG00000026814	Eng	AI528660|AI662476|CD105|Endo|S-endoglin	endoglin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123745206-2	chr4	123744706	123745706	+	754.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023423, intron 1 of 4)	intron (NM_023423, intron 1 of 4)	5093.0	NM_023423	68050.0	Mm.27903	NM_023423	ENSMUSG00000023075	Akirin1	6330407G11Rik	akirin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128800669-2	chr4	128800169	128801169	+	754.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081098, intron 1 of 8)	URR1A|DNA|hAT-Charlie	5443.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14910957-2	chr8	14910457	14911457	+	754.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172751)	promoter-TSS (NM_172751)	-706.0	NM_172751	234094.0	Mm.240298	NM_172751	ENSMUSG00000071176	Arhgef10	6430549H08Rik|mKIAA0294	Rho guanine nucleotide exchange factor (GEF) 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153497087-2	chr2	153496587	153497587	+	754.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134300, intron 1 of 10)	intron (NM_001134300, intron 1 of 10)	32884.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126230093-2	chr4	126229572	126230572	+	754.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	26247.0	NM_144941	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	5.0	3.5	4.0	5.0	6.5	19.5
Merged-chr19-10882556-2	chr19	10882056	10883056	+	754.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134142)	promoter-TSS (NM_134142)	-813.0	NM_134142	68539.0	Mm.251890	NM_134142	ENSMUSG00000034659	Tmem109	1110006I15Rik|AA958958|C77652	transmembrane protein 109	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94947899-2	chr8	94947399	94948399	+	754.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	24205.0	NM_001145972	382045.0	Mm.334726	NM_001033468	ENSMUSG00000061577	Adgrg5	Gm1109|Gpr114|PGR27	adhesion G protein-coupled receptor G5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80173323-2	chr15	80172823	80173823	+	754.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010795)	promoter-TSS (NM_010795)	-398.0	NM_010795	17309.0	Mm.299693	NM_010795	ENSMUSG00000042428	Mgat3	1110038J12Rik|AI848272|GnT-III	mannoside acetylglucosaminyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132081531-2	chr4	132081031	132082031	+	754.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-6218.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-119390259-2	chr6	119389759	119390759	+	754.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_197985, intron 1 of 7)	intron (NM_197985, intron 1 of 7)	-1525.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-139008039-2	chr1	139007539	139008539	+	754.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	30382.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-9884560-2	chr2	9884060	9885060	+	754.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_024257, exon 5 of 5)	non-coding (NR_024257, exon 5 of 5)	3314.0	NR_024257	381347.0	Mm.441450	NR_024257		4930412O13Rik	Gm10853	RIKEN cDNA 4930412O13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47777373-2	chr9	47776873	47777873	+	754.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	40835.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	3.5	13.0	6.5	2.0	13.0	3.0
Merged-chr12-73547807-2	chr12	73547307	73548307	+	754.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_044985)	promoter-TSS (NR_044985)	-676.0	NR_044985	73644.0	Mm.369885	NR_044985	ENSMUSG00000113800	2210039B01Rik	-	RIKEN cDNA 2210039B01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132351560-2	chr4	132351060	132352060	+	754.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_003270)	TTS (NR_003270)	2126.0	NR_003270	399101.0	Mm.486919	NR_002904	ENSMUSG00000085241	Snhg3	Rnu17d|U17HG	small nucleolar RNA host gene 3	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8875993-2	chr10	8875494	8876494	+	754.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	ID_B1|SINE|B4	10076.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	137.0	232.0	175.5	120.5	366.5	218.5
Merged-chr5-140140711-2	chr5	140140211	140141211	+	754.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359027, intron 1 of 6)	intron (NM_001359027, intron 1 of 6)	34207.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88540001-2	chr4	88539501	88540501	+	754.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-17207.0	NM_010510	15977.0	Mm.1245	NM_010510	ENSMUSG00000048806	Ifnb1	IFN-beta|IFNB|Ifb	interferon beta 1, fibroblast	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-56428383-2	chr12	56427888	56428888	+	754.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-82494.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70091692-2	chr11	70091192	70092192	+	754.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313926)	promoter-TSS (NM_001313926)	-952.0	NM_007493	11890.0	Mm.1357	NM_007493	ENSMUSG00000040963	Asgr2	ASGPR2|Asgr|Asgr-2|HL-2	asialoglycoprotein receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29516894-2	chr6	29516394	29517394	+	754.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8942.0	NM_001029985	333088.0	Mm.332961	NM_001029985	ENSMUSG00000059022	Kcp	AW060220|CRIM-2|Crim2|Gm793|KCP-1	kielin/chordin-like protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51819533-2	chr11	51819033	51820033	+	754.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357588, intron 11 of 12)	intron (NM_001357588, intron 11 of 12)	37948.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130049149-2	chr2	130048649	130049649	+	754.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009374, exon 13 of 13)	3' UTR (NM_009374, exon 13 of 13)	-32741.0	NR_105757	102466628.0		NR_105757	ENSMUSG00000098347	Mir6339	Gm27848|mmu-mir-6339	microRNA 6339	ncRNA	7.5	0.0	4.0	0.0	0.0	0.0
Merged-chr19-4168407-2	chr19	4167907	4168907	+	754.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134148, intron 9 of 9)	intron (NM_134148, intron 9 of 9)	-5024.0	NR_153659	58988.0	Mm.271937	NM_021485	ENSMUSG00000024830	Rps6kb2	S6K-beta-2|S6K2	ribosomal protein S6 kinase, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32430585-2	chr5	32430085	32431085	+	754.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28385.0	NM_172707	19046.0	Mm.241931	NM_172707	ENSMUSG00000014956	Ppp1cb	1200010B19	protein phosphatase 1, catalytic subunit, beta isoform	protein-coding	0.0	0.0	0.0	1.5	2.0	0.0
Merged-chr5-21374027-2	chr5	21373527	21374527	+	754.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008013, intron 1 of 1)	intron (NM_008013, intron 1 of 1)	1354.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0.5	8.0	0.0	3.5	9.0	1.5
Merged-chr8-70796016-2	chr8	70795508	70796508	+	754.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-2127.0	NR_106099	102466823.0		NR_106099	ENSMUSG00000099031	Mir7240	Gm27487|mmu-mir-7240	microRNA 7240	ncRNA	8.5	2.0	0.5	1.5	0.0	1.5
Merged-chr7-44983833-2	chr7	44983333	44984333	+	754.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045521, exon 3 of 12)	non-coding (NR_045521, exon 3 of 12)	2587.0	NM_001252476	15469.0	Mm.27545	NM_019830	ENSMUSG00000109324	Prmt1	6720434D09Rik|AW214366|Hrmt1l2|Mrmt1	protein arginine N-methyltransferase 1	protein-coding	0.0	0.0	0.5	0.0	1.5	0.0
Merged-chr9-58270202-3	chr9	58269663	58270663	+	754.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	16999.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44692050-3	chr16	44691545	44692545	+	754.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32256.0	NM_145972	212547.0	Mm.310573	NM_145972	ENSMUSG00000036208	Nepro	-	nucleolus and neural progenitor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-19194356-2	chr19	19193856	19194856	+	754.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83160.0	NM_001043354	225998.0	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta|hstp	RAR-related orphan receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-27019182-2	chr8	27018682	27019682	+	754.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4617.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152825908-2	chr2	152825408	152826408	+	754.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	2581.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127343261-4	chr10	127342751	127343751	+	754.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1672.0	NM_010296	14632.0	Mm.391450	NM_010296	ENSMUSG00000025407	Gli1	AV235269|Zfp-5|Zfp5	GLI-Kruppel family member GLI1	protein-coding	2.0	4.0	0.0	0.0	0.0	1.0
Merged-chr12-79638134-3	chr12	79637628	79638628	+	754.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	286605.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24638647-3	chr13	24638127	24639127	+	754.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029679)	promoter-TSS (NM_029679)	-21.0	NM_001080381	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70649223-3	chr8	70648754	70649754	+	754.422241	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023217, exon 5 of 5)	3' UTR (NM_023217, exon 5 of 5)	10484.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	15.0	1.5	7.0	1.5	0.0	0.0
Merged-chr14-31377545-2	chr14	31377045	31378045	+	754.400024	f1_balb.idr|f1_c57bl6.idr	exon (NM_011894, exon 7 of 9)	exon (NM_011894, exon 7 of 9)	40132.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120504150-2	chr8	120503650	120504650	+	754.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	15284.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32500263-4	chr9	32499748	32500748	+	754.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	41204.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60801503-2	chr18	60801030	60802030	+	754.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	-2319.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	15.0	28.0	14.0	3.0	15.5	9.5
Merged-chr7-67229733-2	chr7	67229233	67230233	+	754.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7117.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74268956-2	chr1	74268456	74269456	+	754.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029711)	TTS (NM_029711)	-9644.0	NM_174985	227289.0	Mm.246587	NM_174985	ENSMUSG00000064272	Gpbar1	BG37|GPCR|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20811311-3	chr14	20810794	20811794	+	754.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17055.0	NR_153779	102631887.0	Mm.122292	NR_153779	ENSMUSG00000114241	Gm30108	-	predicted gene, 30108	ncRNA	0.0	1.5	1.5	0.0	0.0	0.0
Merged-chr19-21282857-3	chr19	21282512	21283512	+	754.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009551, exon 6 of 6)	3' UTR (NM_009551, exon 6 of 6)	10734.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	0.0	0.0	0.5	0.0	8.0	0.5
Merged-chr8-106892465-3	chr8	106891940	106892940	+	754.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145412, intron 1 of 3)	intron (NM_145412, intron 1 of 3)	1153.0	NM_145412	214987.0	Mm.490308	NM_145412	ENSMUSG00000046691	Chtf8	5830457O10Rik|Ctf8|Derpc	CTF8, chromosome transmission fidelity factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-45408808-3	chr16	45408341	45409341	+	754.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010818, intron 1 of 5)	intron (NM_010818, intron 1 of 5)	212.0	NM_001358443	17470.0	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	1.0	1.5	2.0	14.5	2.0	3.0
Merged-chr7-98968199-3	chr7	98967694	98968694	+	754.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 12 of 14)	intron (NM_178635, intron 12 of 14)	129349.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108315334-4	chr8	108314838	108315838	+	754.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	269339.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34840158-3	chr7	34839638	34840638	+	754.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-27427.0	NM_175140	68947.0	Mm.29380	NM_175140	ENSMUSG00000060402	Chst8	1500011J21Rik|AI426009	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	protein-coding	4.0	3.5	5.0	3.5	0.0	4.0
Merged-chr5-62815955-4	chr5	62815463	62816463	+	754.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 1 of 8)	AmnSINE1|SINE|Deu	2140.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	2.0	12.5	2.0	5.0	1.5	5.0
Merged-chr18-4344498-3	chr18	4343983	4344983	+	754.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 2 of 7)	intron (NM_007746, intron 2 of 7)	8470.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19279754-4	chr7	19279288	19280288	+	754.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177691, exon 1 of 5)	exon (NM_177691, exon 1 of 5)	261.0	NM_177691	232941.0	Mm.134068	NM_177691	ENSMUSG00000030402	Ppm1n	A930002H20|C79127	protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-144936867-2	chr7	144936366	144937366	+	754.3125	f1_balb.idr|f1_c57bl6.idr	intron (NM_007631, intron 3 of 4)	intron (NM_007631, intron 3 of 4)	3059.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	2.0	0.5	0.0	3.5	3.0	0.0
Merged-chr12-80242828-3	chr12	80242321	80243321	+	754.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 1 of 20)	ID_B1|SINE|B4	17550.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112102206-3	chr13	112101701	112102701	+	754.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-186250.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-26466846-2	chr12	26466404	26467404	+	754.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2311.0	NM_020557	22169.0	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	2.0	16.0	14.0	13.0	17.0	9.0
Merged-chr7-45723546-2	chr7	45723046	45724046	+	754.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033170, exon 2 of 5)	exon (NM_001033170, exon 2 of 5)	2270.0	NM_027055	69363.0	Mm.45607	NM_027055	ENSMUSG00000070563	Spaca4	1700008E09Rik|AV043694|Samp14	sperm acrosome associated 4	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr4-53010721-2	chr4	53010216	53011216	+	754.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-1164.0	NM_001347099	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	5.5	3.0	0.0	2.5	4.5
Merged-chr2-36021782-2	chr2	36021282	36022282	+	754.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27510.0	NM_026703	68375.0	Mm.19834	NM_026703	ENSMUSG00000026895	Ndufa8	0610033L03Rik|AW261656	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92694037-2	chr16	92693537	92694537	+	754.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 3 of 6)	intron (NM_001111022, intron 3 of 6)	3292.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-174471952-2	chr2	174471452	174472452	+	754.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_025531, intron 1 of 5)	intron (NM_025531, intron 1 of 5)	989.0	NM_025531	66390.0	Mm.182294	NM_025531	ENSMUSG00000016257	Prelid3b	2310042G06Rik|AA407013|Slmo2	PRELI domain containing 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34448024-2	chr19	34447524	34448524	+	754.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27111.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111367049-2	chr8	111366549	111367549	+	754.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_178086, intron 1 of 6)	intron (NM_178086, intron 1 of 6)	26772.0	NM_178086	338521.0	Mm.41083	NM_178086	ENSMUSG00000033579	Fa2h	FAAH|Faxdc1|G630055L08Rik	fatty acid 2-hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106702761-4	chr11	106702250	106703250	+	754.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 2 of 14)	intron (NM_001305158, intron 2 of 14)	12531.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-72142104-4	chr1	72141594	72142594	+	754.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70213.0	NM_001005423	381269.0	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60880144-2	chr2	60879644	60880644	+	754.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	1294.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100873589-5	chr13	100873073	100874073	+	754.179993	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40146.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32445929-4	chr9	32445432	32446432	+	754.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 5 of 8)	intron (NM_008026, intron 5 of 8)	51947.0	NM_001168354	56379.0	Mm.390168	NM_019659	ENSMUSG00000041248	Kcnj1	Kir1.1|ROMK|Romk2	potassium inwardly-rectifying channel, subfamily J, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94730420-2	chr11	94729920	94730920	+	754.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25921.0	NM_001007584	432589.0	Mm.342314	NM_001007584	ENSMUSG00000056008	Gm11541	-	predicted gene 11541	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142374688-2	chr7	142374191	142375191	+	754.166687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347541)	promoter-TSS (NM_001347541)	-945.0	NM_001347541	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.5	7.5	8.0	0.0	0.0	3.5
Merged-chr2-46373136-3	chr2	46372712	46373712	+	754.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	676607.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4204970-2	chr19	4204470	4205470	+	754.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3367.0	NM_011237	19367.0	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154012565-2	chr4	154012065	154013065	+	754.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_201226, intron 1 of 6)	intron (NM_201226, intron 1 of 6)	762.0	NM_201226	72946.0	Mm.260690	NM_201226	ENSMUSG00000029028	Lrrc47	2900010D03Rik|AA960559|mKIAA1185	leucine rich repeat containing 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143468654-2	chr5	143468154	143469154	+	754.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 2 of 14)	B1_Mur4|SINE|Alu	4161.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108444581-4	chr6	108444042	108445042	+	754.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-45201.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24627478-2	chr7	24626978	24627978	+	754.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001102613, intron 14 of 14)	intron (NM_001102613, intron 14 of 14)	-9092.0	NM_133743	72434.0	Mm.281093	NM_133743	ENSMUSG00000057454	Lypd3	2310061G07Rik|C4.4a	Ly6/Plaur domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85925578-3	chr11	85925077	85926077	+	754.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28812.0	NM_172798	21387.0	Mm.275336	NM_011536	ENSMUSG00000000094	Tbx4	3930401C23	T-box 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115909256-3	chr6	115908760	115909760	+	754.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167763, intron 17 of 28)	intron (NM_001167763, intron 17 of 28)	-22667.0	NM_145383	212541.0	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-4747138-3	chr6	4746579	4747579	+	754.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130877)	promoter-TSS (NM_130877)	125.0	NM_001130188	20392.0	Mm.8739	NM_011360	ENSMUSG00000004631	Sgce	e-SG	sarcoglycan, epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105982904-6	chr1	105982415	105983415	+	754.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151625, intron 2 of 2)	intron (NR_151625, intron 2 of 2)	7367.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	0.0	17.0	2.0	3.0	3.5	7.5
Merged-chr6-125272262-3	chr6	125271752	125272752	+	754.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015527, intron 3 of 3)	intron (NR_015527, intron 3 of 3)	6727.0	NR_015527	73870.0	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	5.5	36.5	13.5	13.0	18.0	5.5
Merged-chr2-102820734-3	chr2	102820231	102821231	+	754.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 13 of 13)	intron (NM_001039150, intron 13 of 13)	-73971.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	30.5	27.5	22.5	1.5	24.5	7.5
Merged-chr9-92458579-3	chr9	92458064	92459064	+	754.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178711, intron 1 of 8)	intron (NM_178711, intron 1 of 8)	1186.0	NM_178711	235527.0	Mm.55289	NM_178711	ENSMUSG00000032377	Plscr4	AV245873	phospholipid scramblase 4	protein-coding	1.0	4.0	10.0	0.0	4.5	9.5
Merged-chr2-122143968-4	chr2	122143458	122144458	+	754.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026251, intron 2 of 17)	MTD|LTR|ERVL-MaLR	-3729.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	0.5	8.0	5.0	7.5	7.0	6.0
Merged-chr4-132384029-2	chr4	132383529	132384529	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175306, intron 3 of 13)	intron (NM_175306, intron 3 of 13)	-30343.0	NR_003270	399101.0	Mm.486919	NR_002904	ENSMUSG00000085241	Snhg3	Rnu17d|U17HG	small nucleolar RNA host gene 3	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8876359-2	chr10	8875856	8876856	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	9714.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	79.5	179.0	152.0	86.0	224.0	156.5
Merged-chr15-86362880-3	chr15	86362380	86363380	+	754.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358062, intron 6 of 9)	intron (NM_001358062, intron 6 of 9)	85205.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.5	3.0	0.0	0.0
Merged-chr8-122462719-1	chr8	122462219	122463219	+	754.0	f1_c57bl6.idr	Intergenic	Intergenic	-2027.0	NM_013914	30927.0	Mm.103673	NM_013914	ENSMUSG00000006587	Snai3	AI643946|Smuc|Zfp293	snail family zinc finger 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-121521639-2	chr1	121521139	121522139	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010483, intron 1 of 1)	intron (NM_010483, intron 1 of 1)	6826.0	NM_010483	15564.0	Mm.4833	NM_010483	ENSMUSG00000050534	Htr5b	5-Ht5b	5-hydroxytryptamine (serotonin) receptor 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40142389-1	chr4	40141889	40142889	+	754.0	f0_balb.idr	promoter-TSS (NM_007386)	promoter-TSS (NM_007386)	-876.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125090263-2	chr6	125089763	125090763	+	754.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5718.0	NM_001346610	107932.0	Mm.333388	NM_145979	ENSMUSG00000063870	Chd4	9530019N15Rik|AA617397|BC005710|D6Ertd380e|Mi-2beta|mKIAA4075	chromodomain helicase DNA binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-79760319-2	chr9	79759819	79760819	+	754.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009945)	promoter-TSS (NM_009945)	-466.0	NM_009945	12866.0	Mm.152627	NM_009945	ENSMUSG00000032330	Cox7a2	COX7AL|Cox7a3|CoxVIIa-L	cytochrome c oxidase subunit VIIa 2	protein-coding	3.5	5.0	3.0	2.0	12.0	9.5
Merged-chr8-68092881-4	chr8	68092380	68093380	+	754.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118306.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	4.0	5.5	6.5	10.5	4.5	7.5
Merged-chr2-167924310-2	chr2	167923810	167924810	+	754.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-8017.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43518987-2	chr19	43518475	43519475	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010324, intron 1 of 8)	intron (NM_010324, intron 1 of 8)	5630.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	3.5	0.5	3.5	1.0	7.0	0.5
Merged-chr1-36080594-2	chr1	36080094	36081094	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	12194.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-118392531-1	chr1	118392031	118393031	+	754.0	f1_balb.idr	intron (NM_001359330, intron 1 of 39)	RSINE1|SINE|B4	3473.0	NM_001359334	76707.0	Mm.138740	NM_029709	ENSMUSG00000064302	Clasp1	1700030C23Rik|5730583A19Rik|B130045P17Rik|CLASP1alpha	CLIP associating protein 1	protein-coding	1.0	0.0	0.5	0.5	2.0	0.0
Merged-chr12-84762164-2	chr12	84761664	84762664	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 2 of 3)	intron (NM_023409, intron 2 of 3)	10948.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40680222-2	chr19	40679722	40680722	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	Lx5|LINE|L1	20452.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	4.0	37.5	14.5	9.5	57.0	14.0
Merged-chr12-77198513-2	chr12	77198013	77199013	+	754.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39591.0	NM_001252614	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-16141078-2	chr2	16140579	16141579	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310455, intron 33 of 38)	intron (NM_001310455, intron 33 of 38)	-215225.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75645446-2	chr11	75644946	75645946	+	754.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008916, exon 8 of 12)	exon (NM_008916, exon 8 of 12)	-6063.0	NM_008659	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	0.0	3.0	1.5	0.0	2.5	0.0
Merged-chr2-163675902-2	chr2	163675402	163676402	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 2 of 4)	intron (NM_001039390, intron 2 of 4)	17444.0	NM_001164053	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-96292063-1	chr16	96291563	96292563	+	754.0	f0_balb.idr	intron (NM_033149, intron 1 of 2)	intron (NM_033149, intron 1 of 2)	11031.0	NM_033149	93961.0	Mm.154783	NM_033149	ENSMUSG00000074892	B3galt5	1190002B21Rik|AU045265|b3Galt-V	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-9066087-1	chr11	9065587	9066587	+	754.0	f1_c57bl6.idr	intron (NM_001037928, intron 6 of 6)	L1M2|LINE|L1	-17096.0	NM_177576	194974.0	Mm.79210	NM_177576	ENSMUSG00000040985	Sun3	Sunc1	Sad1 and UNC84 domain containing 3	protein-coding	0.0	6.0	2.5	0.0	0.5	0.0
Merged-chr12-102720191-2	chr12	102719691	102720691	+	754.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15322.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19255918-2	chr7	19255418	19256418	+	754.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15936.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25084821-4	chr7	25084301	25085301	+	754.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7994.0	NM_175477	232976.0	Mm.41568	NM_175477	ENSMUSG00000045252	Zfp574	A630056B21Rik|Znf574	zinc finger protein 574	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85624633-2	chr12	85624133	85625133	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 2 of 3)	ID_B1|SINE|B4	24615.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79437988-2	chr15	79437488	79438488	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359863, intron 2 of 10)	intron (NM_001359863, intron 2 of 10)	3830.0	NM_001289899	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27013086-2	chr17	27012586	27013586	+	754.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4949.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	6.0	21.0	7.5	6.0	16.5	7.5
Merged-chr6-97363362-3	chr6	97362876	97363876	+	754.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	L4_A_Mam|LINE|RTE-X	95910.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-140790034-2	chr6	140789534	140790534	+	754.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	163149.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-56977906-1	chr1	56977406	56978406	+	754.0	f1_c57bl6.idr	intron (NM_001358580, intron 1 of 11)	intron (NM_001358580, intron 1 of 11)	744.0	NM_001358581	212712.0	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding	4.0	3.0	0.0	0.0	0.0	0.0
Merged-chr13-36726916-1	chr13	36726416	36727416	+	754.0	f1_balb.idr	intron (NM_153529, intron 2 of 2)	intron (NM_153529, intron 2 of 2)	7561.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	2.5	0.0	0.0	0.5	6.0	0.5
Merged-chr6-113343067-2	chr6	113342567	113343567	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133926, intron 1 of 11)	intron (NM_133926, intron 1 of 11)	855.0	NM_133926	52163.0	Mm.277373	NM_133926	ENSMUSG00000030272	Camk1	AI505105|CaMKIalpha|D6Ertd263e	calcium/calmodulin-dependent protein kinase I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25728204-2	chr17	25727704	25728704	+	754.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145409)	promoter-TSS (NM_145409)	487.0	NM_001357176	106707.0	Mm.24603	NM_028009	ENSMUSG00000041199	Rpusd1	2310051D06Rik|AU019540|Rlucl	RNA pseudouridylate synthase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-102656908-2	chr13	102656408	102657408	+	754.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36639.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	4.0	2.5	1.5	0.0	0.0	0.5
Merged-chr5-36949068-2	chr5	36948568	36949568	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360003, intron 7 of 8)	intron (NM_001360003, intron 7 of 8)	39914.0	NM_011716	22393.0	Mm.20916	NM_011716	ENSMUSG00000039474	Wfs1	AI481085|wolframin	wolframin ER transmembrane glycoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46574283-2	chr19	46573783	46574783	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053196, intron 1 of 11)	intron (NM_053196, intron 1 of 11)	918.0	NM_053196	94279.0	Mm.296837	NM_053196	ENSMUSG00000025036	Sfxn2	C79732|F630107H02Rik	sideroflexin 2	protein-coding	1.0	4.0	5.0	1.0	1.0	5.0
Merged-chr12-91767965-2	chr12	91767465	91768465	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	18471.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134551863-1	chr5	134551363	134552363	+	754.0	f0_c57.idr	intron (NM_001039162, intron 1 of 15)	intron (NM_001039162, intron 1 of 15)	571.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-55252276-4	chr9	55251725	55252725	+	754.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	B2_Mm2|SINE|B2	31400.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-138893708-1	chr3	138893208	138894208	+	754.0	f0_balb.idr	intron (NR_121195, intron 3 of 7)	intron (NR_121195, intron 3 of 7)	151500.0	NM_019571	56224.0	Mm.31927	NM_019571	ENSMUSG00000028152	Tspan5	2810455A09Rik|4930505M03Rik|NET-4|Tm4sf9	tetraspanin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102774927-2	chr2	102774427	102775427	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077514, intron 9 of 10)	intron (NM_001077514, intron 9 of 10)	-28167.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	1.0	1.5	1.5	5.0	4.0	3.0
Merged-chr12-16873853-1	chr12	16873353	16874353	+	754.0	f1_balb.idr	Intergenic	Intergenic	-21125.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	17.0	16.0	10.0	31.5	19.5	14.0
Merged-chr16-55970548-2	chr16	55970048	55971048	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024218, intron 5 of 5)	intron (NM_024218, intron 5 of 5)	-3256.0	NM_173026	271377.0	Mm.282814	NM_173026	ENSMUSG00000022601	Zbtb11	9230110G02Rik|ZNF-U69274	zinc finger and BTB domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-33944891-3	chr8	33944390	33945390	+	754.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1L-int|LTR|ERVL-MaLR	-15027.0	NM_001042675	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	11.0	1.0	1.5	2.5	7.0	0.5
Merged-chr7-98181297-2	chr7	98180797	98181797	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045971, intron 3 of 3)	ORR1E|LTR|ERVL-MaLR	-3023.0	NM_007602	12337.0	Mm.326847	NM_007602	ENSMUSG00000035547	Capn5	nCL-3	calpain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83007818-2	chr6	83007318	83008318	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 7 of 9)	intron (NM_033079, intron 7 of 9)	25653.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	5.0	1.0	8.5	4.5	1.5	1.0
Merged-chr5-90596376-1	chr5	90595876	90596876	+	754.0	f0_balb.idr	intron (NM_001252661, intron 13 of 13)	intron (NM_001252661, intron 13 of 13)	35167.0	NM_001252661	622307.0	Mm.389654	NM_001252661	ENSMUSG00000070690	5830473C10Rik	Arg|Gm17754	RIKEN cDNA 5830473C10 gene	protein-coding	0.0	7.5	0.0	0.0	5.0	9.0
Merged-chr19-4018762-2	chr19	4018262	4019262	+	754.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6007.0	NM_133666	17995.0	Mm.29842	NM_133666	ENSMUSG00000037916	Ndufv1	CI-51kD	NADH dehydrogenase (ubiquinone) flavoprotein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85495116-1	chr1	85494616	85495616	+	754.0	f1_balb.idr	Intergenic	Intergenic	103694.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86062609-2	chr1	86062109	86063109	+	754.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2010.0	NM_027357	70247.0	Mm.280013	NM_027357	ENSMUSG00000026229	Psmd1	2410026J11Rik|P112|S1	proteasome (prosome, macropain) 26S subunit, non-ATPase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27691065-2	chr3	27690565	27691565	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 1 of 26)	intron (NM_001356953, intron 1 of 26)	19387.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70605543-2	chr14	70605043	70606043	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360028, intron 11 of 14)	intron (NM_001360028, intron 11 of 14)	-5708.0	NM_194345	239170.0	Mm.247582	NM_194345	ENSMUSG00000022095	Fam160b2	G430067P06Rik|Rai16	family with sequence similarity 160, member B2	protein-coding	0.0	0.5	2.0	3.0	0.0	0.0
Merged-chr1-191278929-2	chr1	191278429	191279429	+	754.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	39189.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	1.5	4.0	10.5	0.0	14.0	1.5
Merged-chr14-52328028-1	chr14	52327528	52328528	+	754.0	f1_balb.idr	intron (NM_015772, intron 1 of 1)	intron (NM_015772, intron 1 of 1)	642.0	NM_015772	50524.0	Mm.39487	NM_015772	ENSMUSG00000049532	Sall2	AI225809|AW559097|Msal-2|Sal-2|mKIAA0360|p150(Sal2)	spalt like transcription factor 2	protein-coding	0.0	0.0	3.5	0.0	3.5	0.5
Merged-chr4-155622323-2	chr4	155621823	155622823	+	754.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177186, exon 9 of 9)	3' UTR (NM_177186, exon 9 of 9)	2432.0	NR_040441	100502734.0	Mm.306018	NR_040441	ENSMUSG00000086682	Gm16023	-	predicted gene 16023	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114734609-1	chr11	114734109	114735109	+	754.0	f1_c57bl6.idr	exon (NM_001034878, exon 3 of 13)	exon (NM_001034878, exon 3 of 13)	7197.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	0.0	0.0	2.0	0.0	0.0	3.0
Merged-chr2-34175628-2	chr2	34175128	34176128	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290576, intron 7 of 7)	intron (NM_001290576, intron 7 of 7)	-67893.0	NR_130173	329387.0	Mm.125817	NR_130173	ENSMUSG00000087461	C230014O12Rik	-	RIKEN cDNA C230014O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-105216575-4	chr13	105216131	105217131	+	753.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360891, intron 5 of 7)	intron (NM_001360891, intron 5 of 7)	76383.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	3.0	2.0	1.5	5.5	22.5	8.0
Merged-chr18-49553851-3	chr18	49553355	49554355	+	753.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30566.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	2.5	0.0	0.0	2.5	0.0	0.0
Merged-chr2-148673413-3	chr2	148672908	148673908	+	753.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019761, intron 1 of 1)	intron (NM_019761, intron 1 of 1)	767.0	NM_001110159	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-47318982-3	chr18	47318462	47319462	+	753.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311097, intron 1 of 17)	intron (NM_001311097, intron 1 of 17)	49906.0	NM_018744	20358.0	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35725887-3	chr8	35725382	35726382	+	753.888916	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	100677.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	24.5	8.0	6.5	1.0	7.0	0.5
Merged-chr6-87733799-3	chr6	87733288	87734288	+	753.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159697, intron 2 of 7)	intron (NM_001159697, intron 2 of 7)	2919.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	3.0	4.0	0.5	16.0	4.0	0.5
Merged-chr6-124278413-3	chr6	124277922	124278922	+	753.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-26229.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55838632-4	chr4	55838127	55839127	+	753.887512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-306152.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28341444-2	chr17	28340944	28341944	+	753.875	f1_balb.idr|f1_c57bl6.idr	exon (NM_011566, exon 2 of 13)	exon (NM_011566, exon 2 of 13)	8902.0	NM_001204156	21678.0	Mm.6655	NM_011566	ENSMUSG00000002249	Tead3	DTEF-1|ETFR-1|TEAD-3|TEF-5|Tcf13r2	TEA domain family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133905367-4	chr4	133904869	133905869	+	753.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-17572.0	NM_009097	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	1.5	13.0	9.5	13.5	6.0	11.0
Merged-chr4-99061691-3	chr4	99061176	99062176	+	753.866638	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026082, intron 11 of 47)	intron (NM_026082, intron 11 of 47)	30722.0	NM_013913	30924.0	Mm.28341	NM_013913	ENSMUSG00000028553	Angptl3	hypl	angiopoietin-like 3	protein-coding	37.5	59.0	22.5	23.5	53.5	24.5
Merged-chr17-35578409-4	chr17	35577922	35578922	+	753.862488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10937.0	NM_175148	69542.0	Mm.265291	NM_175148	ENSMUSG00000039269	2300002M23Rik	Stg|emprin	RIKEN cDNA 2300002M23 gene	protein-coding	3.5	1.0	0.0	4.5	3.5	2.0
Merged-chr14-45092516-4	chr14	45092007	45093007	+	753.854187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	104396.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88750055-4	chr15	88749346	88750346	+	753.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1865.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35167722-2	chr17	35167222	35168222	+	753.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2845.0	NM_020027	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22848820-3	chr11	22848324	22849324	+	753.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	10911.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155356791-2	chr2	155356295	155357295	+	753.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030475)	promoter-TSS (NR_030475)	-22.0	NR_030475	735287.0		NR_030475	ENSMUSG00000076216	Mir695	Mirn695|mmu-mir-695	microRNA 695	ncRNA	12.5	17.0	7.5	7.5	17.0	17.5
Merged-chr2-152933888-2	chr2	152933381	152934381	+	753.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010226)	promoter-TSS (NM_010226)	-673.0	NM_010226	14239.0	Mm.205798	NM_010226	ENSMUSG00000074676	Foxs1	FREAC10|Fkh3|Fkhl18	forkhead box S1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80150819-4	chr12	80150305	80151305	+	753.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17961.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122145045-2	chr5	122144545	122145545	+	753.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-6983.0	NM_183307	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	3.0	17.0	18.5	3.5	8.0	9.5
Merged-chr10-81181195-2	chr10	81180695	81181695	+	753.785706	f1_balb.idr|f1_c57bl6.idr	intron (NM_007907, intron 11 of 13)	intron (NM_007907, intron 11 of 13)	-1812.0	NM_001190474	13144.0	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45018717-3	chr19	45018311	45019311	+	753.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130526, intron 1 of 4)	intron (NM_001130526, intron 1 of 4)	676.0	NM_001130526	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-83807771-3	chr9	83807270	83808270	+	753.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1465.0	NM_148941	83603.0	Mm.83949	NM_148941	ENSMUSG00000032262	Elovl4	-	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60608675-3	chr13	60608197	60609197	+	753.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	ORR1E|LTR|ERVL-MaLR	6486.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-9133007-4	chr16	9132545	9133545	+	753.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR41C|LTR|ERV1	302945.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128613425-2	chr4	128612900	128613900	+	753.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3302.0	NM_177758	269585.0	Mm.153291	NM_177758	ENSMUSG00000061894	Zscan20	C130001F22|Zfp31|Zkscan20	zinc finger and SCAN domains 20	protein-coding	0.0	6.5	1.5	0.0	15.0	6.5
Merged-chr11-98772089-2	chr11	98771589	98772589	+	753.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_145434, exon 2 of 8)	exon (NM_145434, exon 2 of 8)	3288.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-13432199-4	chr2	13431699	13432699	+	753.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081084, intron 22 of 66)	intron (NM_001081084, intron 22 of 66)	59677.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21786832-3	chr13	21786334	21787334	+	753.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178202)	promoter-TSS (NM_178202)	384.0	NM_178184	319170.0		NM_178184	ENSMUSG00000069309	Hist1h2an	-	histone cluster 1, H2an	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-100520761-4	chr9	100520253	100521253	+	753.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010878, intron 1 of 3)	intron (NM_010878, intron 1 of 3)	-13897.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	2.0	6.0	1.0	2.0	9.0	0.0
Merged-chr18-34080614-3	chr18	34080129	34081129	+	753.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-73423.0	NM_013512	13824.0	Mm.3465	NM_013512	ENSMUSG00000024376	Epb41l4a	Epb4.1l4|Epb4.1l4a|NBL4	erythrocyte membrane protein band 4.1 like 4a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21128785-3	chr19	21128321	21129321	+	753.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	24111.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79912448-3	chr12	79911942	79912942	+	753.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12291.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-91093363-3	chr13	91092868	91093868	+	753.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025770, intron 3 of 7)	intron (NM_025770, intron 3 of 7)	130619.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4717115-2	chr7	4716615	4717615	+	753.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142792, intron 5 of 5)	intron (NM_001142792, intron 5 of 5)	7967.0	NM_001142792	330460.0	Mm.361851	NM_177887	ENSMUSG00000046456	Tmem150b	A630041N19|Tmem224	transmembrane protein 150B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21035678-2	chr9	21035178	21036178	+	753.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008319, intron 6 of 10)	intron (NM_008319, intron 6 of 10)	-3350.0	NR_035438	100316681.0		NR_035438	ENSMUSG00000084663	Mir1900	Mirn1900|mmu-mir-1900	microRNA 1900	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-58923787-2	chr2	58923287	58924287	+	753.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 10 of 13)	intron (NM_001362394, intron 10 of 13)	168603.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124605054-2	chr2	124604554	124605554	+	753.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-5242.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139747820-2	chr5	139747315	139748315	+	753.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11482.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr5-101960370-2	chr5	101959869	101960869	+	753.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 6 of 66)	intron (NM_172882, intron 6 of 66)	109552.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	12.0	2.5	8.5	0.5	10.5	1.5
Merged-chr3-106546237-4	chr3	106545745	106546745	+	753.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293694, intron 1 of 8)	intron (NM_001293694, intron 1 of 8)	1380.0	NM_001357818	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79712502-5	chr10	79711963	79712963	+	753.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009768)	TTS (NM_009768)	-4171.0	NM_008226	15166.0	Mm.12956	NM_008226	ENSMUSG00000020331	Hcn2	BCNG2|HAC1|trls	hyperpolarization-activated, cyclic nucleotide-gated K+ 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10566660-3	chr17	10566182	10567182	+	753.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 4 of 4)	intron (NM_027032, intron 4 of 4)	110466.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49926686-2	chr16	49926186	49927186	+	753.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29144.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125420355-2	chr7	125419853	125420853	+	753.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24267.0	NM_029842	77035.0	Mm.307239	NM_029842	ENSMUSG00000030752	Kdm8	3110005O21Rik|Jmjd5	lysine (K)-specific demethylase 8	protein-coding	1.5	7.0	6.0	3.5	1.0	5.5
Merged-chr1-127773265-2	chr1	127772765	127773765	+	753.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028399)	promoter-TSS (NM_028399)	789.0	NR_045298	100502745.0	Mm.440061	NR_045298	ENSMUSG00000102014	2900009J06Rik	-	RIKEN cDNA 2900009J06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152115991-2	chr4	152115491	152116491	+	753.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291010)	promoter-TSS (NM_001291010)	57.0	NM_001291010	85030.0	Mm.101198	NM_033042	ENSMUSG00000024793	Tnfrsf25	APO-3|DDR3|DR3|LARD|TR3|TRAMP|Tnfrsf12|WSL-1|WSL-LR|Wsl	tumor necrosis factor receptor superfamily, member 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-43218952-4	chr3	43218461	43219461	+	753.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1476343.0	NM_027271	73852.0	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-59863006-2	chr1	59862506	59863506	+	753.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007561, intron 10 of 12)	B1_Mur3|SINE|Alu	-50000.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	4.5	1.0	0.0	4.0	5.0	1.5
Merged-chr10-69371656-2	chr10	69371156	69372156	+	753.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18744.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-21318311-3	chr12	21317748	21318748	+	753.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026347, intron 3 of 5)	intron (NM_026347, intron 3 of 5)	1856.0	NM_026347	67732.0	Mm.335830	NM_026347	ENSMUSG00000062054	Iah1	1500019E20Rik|4833421E05Rik	isoamyl acetate-hydrolyzing esterase 1 homolog	protein-coding	24.5	3.5	0.0	6.0	6.5	1.5
Merged-chr10-17774707-2	chr10	17774207	17775207	+	753.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21512.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	17.0	34.0	21.0	13.5	22.0	23.0
Merged-chr5-141043876-2	chr5	141043376	141044376	+	753.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-43280.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31689789-2	chr2	31689289	31690289	+	753.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001283047, exon 1 of 12)	5' UTR (NM_001283047, exon 1 of 12)	1252.0	NM_001283046	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-186675532-2	chr1	186675032	186676032	+	753.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009367, intron 1 of 6)	intron (NM_009367, intron 1 of 6)	30457.0	NM_009367	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-10193114-2	chr5	10192614	10193614	+	753.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-467762.0	NM_181850	108069.0	Mm.318966	NM_181850	ENSMUSG00000003974	Grm3	0710001G23Rik|Gprc1c|mGlu3|mGluR3	glutamate receptor, metabotropic 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-62042473-2	chr14	62041973	62042973	+	753.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	250506.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44062489-2	chr16	44061989	44062989	+	753.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR52|LTR|ERVL	-20481.0	NM_001359085	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67596158-2	chr10	67595658	67596658	+	753.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24199.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12915325-2	chr17	12914825	12915825	+	753.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026310, intron 2 of 3)	intron (NM_026310, intron 2 of 3)	766.0	NM_026310	67681.0	Mm.290166	NM_026310	ENSMUSG00000057388	Mrpl18	1010001C05Rik|C79879|HSPC071|MRP-L18	mitochondrial ribosomal protein L18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31069329-2	chr6	31068829	31069829	+	753.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6236.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-123581034-2	chr2	123580534	123581534	+	753.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-508935.0	NM_001290997	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98191132-2	chr11	98190632	98191632	+	753.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080118, intron 1 of 16)	intron (NM_001080118, intron 1 of 16)	1774.0	NM_013634	19014.0	Mm.12926	NM_013634	ENSMUSG00000018160	Med1	AI480703|CRSP210|DRIP205|PBP|Pparbp|TRAP220|TRIP-2|l11Jus15	mediator complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-117357282-2	chr9	117356782	117357782	+	753.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172121, intron 1 of 14)	intron (NM_001172121, intron 1 of 14)	-104799.0	NM_001172124	207181.0	Mm.326411	NM_178660	ENSMUSG00000039607	Rbms3	6720477E09Rik|8430436O14Rik	RNA binding motif, single stranded interacting protein	protein-coding	0.5	1.5	3.0	0.0	2.0	2.0
Merged-chr17-34284645-2	chr17	34284145	34285145	+	753.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010378, intron 1 of 4)	intron (NM_010378, intron 1 of 4)	3126.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	13.5	58.0	23.0	20.0	24.5	10.0
Merged-chr4-128808096-2	chr4	128807596	128808596	+	753.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1984.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111743008-2	chr8	111742388	111743388	+	753.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009954, intron 1 of 6)	intron (NM_009954, intron 1 of 6)	961.0	NM_009954	12927.0	Mm.3758	NM_009954	ENSMUSG00000031955	Bcar1	AI385681|Cas|Crkas	breast cancer anti-estrogen resistance 1	protein-coding	1.0	0.0	1.0	0.5	0.0	0.0
Merged-chr11-17010041-2	chr11	17009541	17010541	+	753.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-1323.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-164316884-3	chr1	164316382	164317382	+	753.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178071, intron 3 of 9)	intron (NM_178071, intron 3 of 9)	9210.0	NM_138314	171567.0	Mm.219428	NM_138314	ENSMUSG00000026575	Nme7	D530024H21Rik|Nm23-M7|Nm23-r7	NME/NM23 family member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-40775647-2	chr11	40775147	40776147	+	753.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20361.0	NM_009831	12450.0	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	9.0	7.0	3.0	9.5	7.0	1.5
Merged-chr9-21090964-2	chr9	21090464	21091464	+	753.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_038081, intron 1 of 16)	intron (NR_038081, intron 1 of 16)	1024.0	NM_027911	71766.0	Mm.196137	NM_027911	ENSMUSG00000010205	Raver1	1300006N24Rik|AA050359|mKIAA1978	ribonucleoprotein, PTB-binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-24660926-2	chr6	24660426	24661426	+	753.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028459, intron 1 of 10)	intron (NM_028459, intron 1 of 10)	4069.0	NM_001167745	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57063267-2	chr17	57062767	57063767	+	753.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359813, intron 2 of 3)	intron (NM_001359813, intron 2 of 3)	1036.0	NM_177638	224912.0	Mm.284447	NM_177638	ENSMUSG00000044279	Crb3	5730439B18|AU015179|AU041752	crumbs family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-109517588-2	chr7	109517088	109518088	+	753.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-1607.0	NM_011975	26451.0	Mm.305750	NM_011975	ENSMUSG00000046364	Rpl27a	L27'|L27A|L29	ribosomal protein L27A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34636541-1	chr17	34636041	34637041	+	753.5	f1_balb.idr	Intergenic	Intergenic	6855.0	NM_030890	260297.0	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31|SynDIG4	proline-rich transmembrane protein 1	protein-coding	42.0	109.0	58.0	36.5	96.5	73.0
Merged-chr11-114873255-2	chr11	114872755	114873755	+	753.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001110337)	TTS (NM_001110337)	-16786.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103134476-2	chr11	103133976	103134976	+	753.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130515, intron 2 of 2)	intron (NM_001130515, intron 2 of 2)	1117.0	NM_027658	71059.0	Mm.273871	NM_027658	ENSMUSG00000043372	Hexim2	4933402L21Rik	hexamethylene bis-acetamide inducible 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98092816-2	chr15	98092316	98093316	+	753.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163488, intron 1 of 22)	CpG	227.0	NM_001163488	18642.0	Mm.272582	NM_021514	ENSMUSG00000033065	Pfkm	AI131669|ATP-PFK|PFK-A|PFK-M|Pfk-4|Pfk4|Pfka|Pfkx	phosphofructokinase, muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79351720-2	chr15	79351179	79352179	+	753.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304832, intron 1 of 2)	intron (NM_001304832, intron 1 of 2)	3277.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	11.5	1.0	1.0	0.0	1.0	1.0
Merged-chr18-30510561-2	chr18	30510061	30511061	+	753.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	237696.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-20722904-2	chr2	20722404	20723404	+	753.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177630, intron 5 of 17)	intron (NM_001177630, intron 5 of 17)	203391.0	NM_001177631	208618.0	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95442493-3	chr10	95441985	95442985	+	753.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25110.0	NR_045338	70523.0	Mm.158398	NR_045338	ENSMUSG00000097766	5730420D15Rik	-	RIKEN cDNA 5730420D15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41501030-3	chr13	41500524	41501524	+	753.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13664.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140349248-3	chr5	140348793	140349793	+	753.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172277, intron 7 of 10)	B1_Mm|SINE|Alu	17337.0	NM_001356584	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55389988-3	chr11	55389476	55390476	+	753.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30104.0	NM_009242	20692.0	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8827953-2	chr17	8827453	8828453	+	753.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011866, intron 1 of 21)	intron (NM_011866, intron 1 of 21)	-22032.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62426747-3	chr10	62426256	62427256	+	753.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4299.0	NM_145419	216019.0	Mm.213213	NM_145419	ENSMUSG00000020080	Hkdc1	BC016235	hexokinase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4435690-2	chr2	4435190	4436190	+	753.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	34714.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107321713-4	chr11	107321229	107322229	+	753.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	polypurine|Low_complexity|Low_complexity	-132348.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155382849-2	chr2	155382350	155383350	+	753.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178111, intron 1 of 3)	intron (NM_178111, intron 1 of 3)	994.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	15.5	29.5	31.0	31.5	34.5	17.0
Merged-chr18-56378117-4	chr18	56377636	56378636	+	753.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22204.0	NM_001360917	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60893360-2	chr13	60892860	60893860	+	753.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	4087.0	NM_007797	13025.0	Mm.30144	NM_007797	ENSMUSG00000074874	Ctla2b	AW545568|Ctla-2b	cytotoxic T lymphocyte-associated protein 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115483189-2	chr5	115482689	115483689	+	753.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_133760, intron 1 of 4)	intron (NM_133760, intron 1 of 4)	1108.0	NM_001167691	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	1.5	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16463374-3	chr7	16462888	16463888	+	753.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008718, exon 6 of 12)	exon (NM_008718, exon 6 of 12)	10609.0	NM_026938	69094.0	Mm.29633	NM_026938	ENSMUSG00000019158	Tmem160	1810008O21Rik	transmembrane protein 160	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106200957-2	chr11	106200457	106201457	+	753.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_026009, exon 13 of 13)	exon (NM_026009, exon 13 of 13)	-7354.0	NM_001252449	72149.0	Mm.403722	NM_028126	ENSMUSG00000069631	Strada	2610019A05Rik|6030402H20Rik|AI480680|E130112C09Rik	STE20-related kinase adaptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76813719-3	chr12	76813216	76814216	+	753.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134050, intron 1 of 6)	intron (NM_134050, intron 1 of 6)	140.0	NM_001347405	104886.0	Mm.172847	NM_134050	ENSMUSG00000021062	Rab15	2310012G06Rik|AI840042	RAB15, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128411292-4	chr6	128410787	128411787	+	753.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133927, intron 10 of 11)	B3|SINE|B2	11521.0	NM_001162858	60345.0	Mm.269883	NM_021717	ENSMUSG00000001520	Nrip2	AW491344|NIX1	nuclear receptor interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65707326-2	chr18	65706826	65707826	+	753.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_177028, exon 2 of 15)	exon (NM_177028, exon 2 of 15)	9058.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4135709-3	chr19	4135235	4136235	+	753.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_144532, exon 6 of 6)	3' UTR (NM_144532, exon 6 of 6)	3874.0	NM_144532	73660.0	Mm.379226	NM_144532	ENSMUSG00000024842	Cabp4	2410038D05Rik	calcium binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-24119623-2	chr9	24119123	24120123	+	753.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_175678, intron 2 of 9)	intron (NM_175678, intron 2 of 9)	21605.0	NM_175678	319239.0	Mm.130824	NM_175678	ENSMUSG00000043659	Npsr1	9330128H10Rik|GPRA|Gpr154|MVTR|PGR14|VRR1	neuropeptide S receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21132200-2	chr9	21131700	21132700	+	753.299988	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018793)	promoter-TSS (NM_018793)	-925.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4194295-2	chr11	4193795	4194795	+	753.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	Lx9|LINE|L1	7462.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38004628-2	chr18	38004128	38005128	+	753.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5659.0	NM_001205336	106952.0	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	0.0	0.0	1.0	0.0	1.5	0.0
Merged-chr3-27311690-2	chr3	27311190	27312190	+	753.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5387.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164470418-3	chr2	164469876	164470876	+	753.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001271575)	TTS (NM_001271575)	3348.0	NM_001271575	73603.0	Mm.472883	NM_001271575	ENSMUSG00000017720	Trp53tg5	1700126L10Rik	transformation related protein 53 target 5	protein-coding	4.5	2.0	0.0	9.0	1.0	0.5
Merged-chr5-134679063-2	chr5	134678563	134679563	+	753.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305875)	promoter-TSS (NM_001305875)	-815.0	NR_131247	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-93375405-3	chr3	93374902	93375902	+	753.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-18297.0	NM_009100	20129.0	Mm.1417	NM_009100	ENSMUSG00000041984	Rptn	-	repetin	protein-coding	8.5	7.5	0.0	1.0	0.0	0.0
Merged-chr6-140620456-2	chr6	140619956	140620956	+	753.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2207.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27035495-4	chr17	27034926	27035926	+	753.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_027544, intron 5 of 5)	intron (NM_027544, intron 5 of 5)	6167.0	NM_027544	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr7-45798355-3	chr7	45797764	45798764	+	753.233337	f1_balb.idr|f1_c57bl6.idr	exon (NM_001290990, exon 12 of 15)	exon (NM_001290990, exon 12 of 15)	12884.0	NM_001290990	381983.0	Mm.44928	NM_001005511	ENSMUSG00000062044	Lmtk3	BC059845|aatyk3	lemur tyrosine kinase 3	protein-coding	0.0	6.0	0.0	0.0	0.0	0.0
Merged-chr17-74328327-3	chr17	74327818	74328818	+	753.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4374.0	NM_024428	66310.0	Mm.28536	NM_024428	ENSMUSG00000024067	Dpy30	2810410M20Rik|C87842	dpy-30, histone methyltransferase complex regulatory subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132076856-3	chr4	132076365	132077365	+	753.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1552.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73609966-3	chr15	73609425	73610425	+	753.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033219, intron 1 of 7)	intron (NM_001033219, intron 1 of 7)	7399.0	NM_001357747	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118490182-5	chr11	118489689	118490689	+	753.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001359368)	TTS (NM_001359368)	13357.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22051972-4	chr9	22051498	22052498	+	753.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010487)	promoter-TSS (NM_010487)	25.0	NM_010487	15571.0	Mm.390167	NM_010487	ENSMUSG00000003410	Elavl3	2600009P04Rik|Huc|PLE21|mHuC	ELAV like RNA binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121116608-3	chr8	121116112	121117112	+	753.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013519, exon 1 of 1)	5' UTR (NM_013519, exon 1 of 1)	441.0	NM_013519	14234.0	Mm.14092	NM_013519	ENSMUSG00000046714	Foxc2	Fkh14|Hfhbf3|MFH-1|Mfh1	forkhead box C2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46861284-3	chr8	46860750	46861750	+	753.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121505.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59670477-3	chr2	59669966	59670966	+	753.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290659, intron 1 of 25)	intron (NM_001290659, intron 1 of 25)	23697.0	NM_001290659	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-41159137-3	chr9	41158623	41159623	+	753.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1061.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	8.0	17.5	15.0	7.5	13.0	8.5
Merged-chr14-70951878-2	chr14	70951390	70952390	+	753.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	61783.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	10.5	9.5	21.5	11.5	10.0	5.0
Merged-chr9-25477955-2	chr9	25477455	25478455	+	753.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3642.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-9530634-3	chr11	9530121	9531121	+	753.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 45 of 61)	CT-rich|Low_complexity|Low_complexity	338679.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90701534-2	chr5	90701071	90702071	+	753.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-57727.0	NM_009141	20311.0	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114255789-2	chr6	114255289	114256289	+	753.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26846.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-65589984-4	chr4	65589484	65590484	+	753.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207109, intron 16 of 22)	intron (NM_207109, intron 16 of 22)	-15002.0	NM_053084	69807.0	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134064304-3	chr6	134063800	134064800	+	753.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	28600.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	55.5	79.0	47.5	52.5	79.0	62.5
Merged-chr6-34964701-3	chr6	34964204	34965204	+	753.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025573, intron 2 of 7)	intron (NM_001025573, intron 2 of 7)	13295.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70729377-3	chr8	70728873	70729873	+	753.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201607, intron 3 of 16)	intron (NM_201607, intron 3 of 16)	5309.0	NM_201607	110385.0	Mm.255180	NM_201607	ENSMUSG00000031842	Pde4c	Dpde1|E130301F19Rik|dunce	phosphodiesterase 4C, cAMP specific	protein-coding	0.0	11.0	7.0	1.0	9.0	0.5
Merged-chr3-105054060-2	chr3	105053571	105054571	+	753.099976	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030249)	promoter-TSS (NM_030249)	-925.0	NM_030249	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	6.0	7.0	4.0	0.5	3.5	2.5
Merged-chr13-34643116-4	chr13	34642618	34643618	+	753.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025831, intron 1 of 4)	intron (NM_025831, intron 1 of 4)	9563.0	NM_025831	66895.0	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171665699-2	chr1	171665199	171666199	+	753.083313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	-12662.0	NM_144539	75345.0	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	10.0	16.5	21.0	24.0	25.5	15.0
Merged-chr11-28765350-1	chr11	28764850	28765850	+	753.0	f1_balb.idr	Intergenic	Lx|LINE|L1	1622.0	NR_029828	387213.0		NR_029828	ENSMUSG00000065415	Mir217	Mirn217|mir-217|mmu-mir-217	microRNA 217	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-13212849-2	chr17	13212349	13213349	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	7807.0	NR_033458	100038394.0	Mm.401677	NR_033458		Gm10512	-	predicted gene 10512	ncRNA	0.0	3.5	0.0	1.0	0.0	0.0
Merged-chr6-134248323-1	chr6	134247823	134248823	+	753.0	f1_c57bl6.idr	exon (NM_007961, exon 5 of 8)	exon (NM_007961, exon 5 of 8)	-148006.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	4.0	17.5	6.5	0.0	8.5	7.5
Merged-chr1-34856254-2	chr1	34855754	34856754	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357425, intron 2 of 8)	intron (NM_001357425, intron 2 of 8)	6265.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52658646-3	chr13	52658154	52659154	+	753.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61772.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29402602-2	chr19	29402102	29403102	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8317.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58715567-2	chr1	58715067	58716067	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	2281.0	NM_001355056	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-93995607-3	chr13	93995124	93996124	+	753.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62172.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72957927-1	chr6	72957427	72958427	+	753.0	f1_balb.idr	exon (NM_001039392, exon 1 of 2)	exon (NM_001039392, exon 1 of 2)	305.0	NM_001039392	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11482818-2	chr8	11482318	11483318	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-4319.0	NM_011227	19332.0	Mm.37632	NM_011227	ENSMUSG00000031504	Rab20	AA536966|D8Ertd350e	RAB20, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21407836-1	chr19	21407336	21408336	+	753.0	f0_balb.idr	intron (NM_010266, intron 10 of 13)	MTD|LTR|ERVL-MaLR	64825.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	0.0	1.0	0.0	3.0	0.0	1.0
Merged-chr13-113628879-2	chr13	113628379	113629379	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10315.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84959593-2	chr17	84959093	84960093	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011151, intron 1 of 5)	intron (NM_011151, intron 1 of 5)	1592.0	NM_001159496	19043.0	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94610975-2	chr11	94610475	94611475	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID2|SINE|ID	-9189.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36981463-2	chr17	36980963	36981963	+	753.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029747)	promoter-TSS (NM_029747)	-226.0	NM_029747	76797.0	Mm.159787	NM_029747	ENSMUSG00000064308	2410137M14Rik	-	RIKEN cDNA 2410137M14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143488810-2	chr5	143488310	143489310	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 8 of 14)	intron (NM_144915, intron 8 of 14)	24317.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-113748190-2	chr11	113747690	113748690	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163346, intron 1 of 1)	intron (NM_001163346, intron 1 of 1)	2970.0	NM_020006	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107133063-2	chr3	107132529	107133529	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	31462.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	10.5	18.0	19.5	9.0	9.0	7.0
Merged-chr7-128183737-2	chr7	128183237	128184237	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029872, intron 8 of 30)	intron (NM_001029872, intron 8 of 30)	9791.0	NM_001029872	381924.0	Mm.334257	NM_001029872	ENSMUSG00000070369	Itgad	Cd11d	integrin, alpha D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95261295-3	chr10	95260798	95261798	+	753.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	(CAAAA)n|Simple_repeat|Simple_repeat	62411.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-12444643-1	chr6	12444143	12445143	+	753.0	f1_balb.idr	intron (NM_001164805, intron 6 of 26)	Lx|LINE|L1	304610.0	NM_001164805	330267.0	Mm.11989	NM_001164805	ENSMUSG00000032625	Thsd7a	Gm837	thrombospondin, type I, domain containing 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124767957-2	chr6	124767457	124768457	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013509, intron 2 of 11)	intron (NM_013509, intron 2 of 11)	1716.0	NM_001302642	13807.0	Mm.3913	NM_013509	ENSMUSG00000004267	Eno2	AI837106|D6Ertd375e|Eno-2|NSE	enolase 2, gamma neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123253428-3	chr5	123252951	123253951	+	753.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25261.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	0.0	4.0	2.0	10.5	1.5	8.5
Merged-chr8-79324240-1	chr8	79323740	79324740	+	753.0	f0_balb.idr	Intergenic	Intergenic	29162.0	NR_045823	234479.0	Mm.238026	NR_045822		Gm4890	A630049P17	predicted gene 4890	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4738384-1	chr7	4737884	4738884	+	753.0	f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-1743.0	NM_146177	232811.0	Mm.247844	NM_146177	ENSMUSG00000059851	Kmt5c	BC024816|Suv4-20h2|Suv420h2	lysine methyltransferase 5C	protein-coding	9.0	7.0	11.5	12.0	6.5	6.0
Merged-chr4-135350622-2	chr4	135350122	135351122	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016799, intron 1 of 17)	intron (NM_016799, intron 1 of 17)	2592.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-18492359-2	chr1	18491859	18492859	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	-227221.0	NM_001040027	77673.0	Mm.99530	NM_183124	ENSMUSG00000067773	Defb41	9230102D03Rik|BD-17|Bd-41|Defb16|Defb17|Gm15386	defensin beta 41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69978553-2	chr8	69978053	69979053	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 1 of 12)	MLTR11B|LTR|ERVK	-4170.0	NM_001113346	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	2.0	2.5	0.0	0.0	0.0	0.0
Merged-chr5-7996303-2	chr5	7995803	7996803	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	35831.0	NM_054098	117167.0	Mm.31403	NM_054098	ENSMUSG00000012428	Steap4	1110021O17Rik|AI481214|Tiarp|Tnfaip9	STEAP family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64163393-3	chr15	64162896	64163896	+	753.0	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_001276461, intron 9 of 28)	L1MB5|LINE|L1	-102948.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	8.0	9.5	26.0	5.0	15.5	8.0
Merged-chr4-133189842-1	chr4	133189342	133190342	+	753.0	f1_c57bl6.idr	intron (NM_153423, intron 5 of 8)	intron (NM_153423, intron 5 of 8)	-5813.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	6.5	7.5	3.0	5.0	21.5	4.5
Merged-chr13-34130022-2	chr13	34129522	34130522	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023716, intron 1 of 3)	intron (NM_023716, intron 1 of 3)	332.0	NM_023716	73710.0	Mm.379227	NM_023716	ENSMUSG00000045136	Tubb2b	2410129E14Rik|brdp	tubulin, beta 2B class IIB	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-113732844-2	chr11	113732344	113733344	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163346, intron 1 of 1)	intron (NM_001163346, intron 1 of 1)	18316.0	NM_020006	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-26607377-2	chr11	26606877	26607877	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13457.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	1.0	1.0	1.0	1.5	0.0	2.5
Merged-chr13-73508900-3	chr13	73508392	73509392	+	753.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145376, intron 9 of 13)	intron (NM_145376, intron 9 of 13)	-27855.0	NM_010020	13162.0	Mm.41993	NM_010020	ENSMUSG00000021609	Slc6a3	DAT|Dat1	solute carrier family 6 (neurotransmitter transporter, dopamine), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69437329-1	chr12	69436829	69437829	+	753.0	f0_balb.idr	Intergenic	Intergenic	38221.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	0.0	0.0	0.0	0.5	1.5	1.5
Merged-chr13-111491479-2	chr13	111490979	111491979	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1352.0	NM_001361924	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97651464-1	chr15	97650964	97651964	+	753.0	f0_balb.idr	Intergenic	L1M2|LINE|L1	54358.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91255610-2	chr2	91255110	91256110	+	753.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289677)	promoter-TSS (NM_001289677)	-555.0	NM_001289677	80708.0	Mm.236650	NM_028733	ENSMUSG00000027257	Pacsin3	4921507A02Rik|6330413E15Rik|AW413130	protein kinase C and casein kinase substrate in neurons 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81608130-2	chr10	81607630	81608630	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030677, intron 2 of 2)	B1_Mm|SINE|Alu	1822.0	NR_030677	268319.0	Mm.131825	NM_001033363	ENSMUSG00000074862	BC025920	-	zinc finger protein pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94186110-2	chr8	94185610	94186610	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7021.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134629681-2	chr5	134629181	134630181	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033561, intron 1 of 6)	intron (NM_033561, intron 1 of 6)	9728.0	NM_001312867	22384.0	Mm.27955	NM_033561	ENSMUSG00000040731	Eif4h	AU018978|D5Ertd355e|E430026L18Rik|Ef4h|Wbscr1|Wscr1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90048476-1	chr7	90047976	90048976	+	753.0	f1_balb.idr	intron (NR_110364, intron 5 of 5)	intron (NR_110364, intron 5 of 5)	19317.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	78.0	128.0	106.0	47.0	110.0	122.0
Merged-chr8-103482417-3	chr8	103481928	103482928	+	753.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121371.0	NR_045730	71058.0	Mm.67707	NR_045730	ENSMUSG00000110336	4933400L20Rik	-	RIKEN cDNA 4933400L20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142530857-3	chr3	142530359	142531359	+	753.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083312, intron 1 of 10)	intron (NM_001083312, intron 1 of 10)	523.0	NM_145545	229900.0	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138085168-2	chr1	138084668	138085668	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 16 of 28)	Lx5|LINE|L1	89958.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-67308641-2	chr2	67308141	67309141	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	134807.0	NM_001033477	383709.0	Mm.244520	NM_001033477		Gm1322	-	predicted gene 1322	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77930941-2	chr11	77930441	77931441	+	753.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001291225, exon 1 of 16)	5' UTR (NM_001291225, exon 1 of 16)	102.0	NM_021286	20370.0	Mm.229330	NM_021286	ENSMUSG00000000632	Sez6	BSRP-C|D11Bhm177e|sez-6	seizure related gene 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87274551-4	chr3	87274043	87275043	+	753.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11019.0	NM_030707	80891.0	Mm.45173	NM_030707	ENSMUSG00000015852	Fcrls	2810439C17Rik|9330158F12|FcRH2sc|Fcrh2|IFGP2|IgSR|MMAN-g|Msr2|moFcRH2sc	Fc receptor-like S, scavenger receptor	protein-coding	3.5	19.5	3.5	14.0	7.5	2.5
Merged-chr10-21603794-2	chr10	21603329	21604329	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027968, intron 2 of 2)	Lx8|LINE|L1	10684.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	8.0	3.5	18.0	4.5	15.5	11.5
Merged-chr5-117495480-1	chr5	117494980	117495980	+	753.0	f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	81478.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	15.0	13.5	13.0	15.5	12.0	23.0
Merged-chr2-90846526-2	chr2	90846026	90847026	+	753.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317241)	promoter-TSS (NM_001317241)	-629.0	NM_001317241	56428.0	Mm.28023	NM_019758	ENSMUSG00000027282	Mtch2	2310034D24Rik|4930539J07Rik|HSPC032	mitochondrial carrier 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99153627-2	chr12	99153127	99154127	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9181.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126101859-1	chr4	126101359	126102359	+	753.0	f1_balb.idr	Intergenic	ID_B1|SINE|B4	-2098.0	NM_028800	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	12.5	8.5	9.5	4.5	26.0	24.0
Merged-chr4-132895622-3	chr4	132895120	132896120	+	753.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11162.0	NM_133887	100226.0	Mm.28237	NM_133887	ENSMUSG00000028879	Stx12	AI850350|AU041521|Stx13	syntaxin 12	protein-coding	6.5	8.0	11.5	13.0	0.0	5.5
Merged-chr2-90553852-1	chr2	90553352	90554352	+	753.0	f1_balb.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	26795.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	19.0	32.0	40.5	33.0	47.5	47.5
Merged-chr3-8662421-2	chr3	8661921	8662921	+	753.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010423)	TTS (NM_010423)	4617.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-92529500-2	chr2	92529000	92530000	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62706.0	NR_106080	102466819.0		NR_106080	ENSMUSG00000099223	Mir7221	Gm27378|mmu-mir-7221	microRNA 7221	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70595778-2	chr8	70595279	70596279	+	753.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_023627, exon 6 of 11)	exon (NM_023627, exon 6 of 11)	1298.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	5.5	0.0	1.5	0.0	0.0	1.5
Merged-chr3-129658131-2	chr3	129657640	129658640	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66946.0	NM_001310737	13645.0	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	12.0	3.5	6.5	11.5	0.0	3.0
Merged-chr5-140567087-2	chr5	140566587	140567587	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2020.0	NM_030022	77998.0	Mm.160040	NM_030022	ENSMUSG00000036586	Grifin	E130101O17Rik	galectin-related inter-fiber protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-153835039-1	chr4	153834539	153835539	+	753.0	f0_balb.idr	Intergenic	Intergenic	115437.0	NR_040670	407793.0	Mm.260950	NR_040670		BC039966	-	cDNA sequence BC039966	ncRNA	2.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38402790-2	chr16	38402290	38403290	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134102, intron 8 of 10)	RMER4B|LTR|ERVK	30355.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39895515-2	chr1	39895015	39896015	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16E1|LTR|ERVL	-5398.0	NM_001252202	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-87083169-1	chr15	87082669	87083669	+	753.0	f0_balb.idr	Intergenic	Intergenic	-461130.0	NM_001252310	106014.0	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	1.0	9.5	2.5	1.0	4.0	1.5
Merged-chr2-34370543-2	chr2	34370043	34371043	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290576, intron 2 of 7)	intron (NM_001290576, intron 2 of 7)	1502.0	NM_001290576	18516.0	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97308754-2	chr6	97308254	97309254	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 13 of 23)	intron (NM_145148, intron 13 of 23)	-55974.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	11.5	2.5	0.0	0.0	0.0	0.0
Merged-chr11-97665086-2	chr11	97664580	97665580	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139311, intron 2 of 19)	intron (NM_139311, intron 2 of 19)	1668.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	0.0	1.0	0.0	3.0	0.0	0.0
Merged-chr14-121456810-2	chr14	121456310	121457310	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48444.0	NM_053079	56643.0	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	0.0	0.0	0.0	2.0	0.0	1.5
Merged-chr11-106392739-2	chr11	106392239	106393239	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-9958.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-150374827-1	chr1	150374327	150375327	+	753.0	f0_balb.idr	exon (NM_145511, exon 11 of 14)	exon (NM_145511, exon 11 of 14)	-18011.0	NM_133780	108989.0	Mm.174256	NM_133780	ENSMUSG00000006005	Tpr	2610029M07Rik|C77892	translocated promoter region, nuclear basket protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-67138455-2	chr6	67137955	67138955	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101048.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-81852694-2	chr9	81852194	81853194	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-10976.0	NM_001357477	75033.0	Mm.335329	NM_175213	ENSMUSG00000043289	Mei4	4930486G11Rik	meiotic double-stranded break formation protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27332383-3	chr7	27331879	27332879	+	752.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175641, intron 4 of 32)	intron (NM_175641, intron 4 of 32)	1269.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157597371-4	chr2	157596875	157597875	+	752.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-31014.0	NM_016916	53619.0	Mm.480461	NM_016916	ENSMUSG00000067787	Blcap	AI462828|Bc10	bladder cancer associated protein	protein-coding	0.0	0.0	0.0	0.0	2.0	1.5
Merged-chr4-146484881-2	chr4	146484381	146485381	+	752.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17119.0	NM_001243138	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-7941797-3	chr15	7941378	7942378	+	752.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081402, intron 10 of 17)	intron (NM_001081402, intron 10 of 17)	126328.0	NM_001301357	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-70661379-3	chr16	70660863	70661863	+	752.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	44938.0	NR_040474	52645.0	Mm.188475	NR_040474		D16Ertd519e	-	DNA segment, Chr 16, ERATO Doi 519, expressed	ncRNA	2.0	2.0	0.5	5.0	6.0	0.0
Merged-chr1-107584914-3	chr1	107584497	107585497	+	752.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5009.0	NM_011459	20725.0	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71253619-2	chr17	71253150	71254150	+	752.8690190000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 7 of 7)	intron (NM_001357337, intron 7 of 7)	48996.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	7.0	2.0	16.5	9.5	2.0	9.0
Merged-chr6-135362704-3	chr6	135362223	135363223	+	752.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010128)	promoter-TSS (NM_010128)	-208.0	NM_010128	13730.0	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	0.0	0.0	1.0	0.0	2.0	0.0
Merged-chr4-130308661-3	chr4	130308174	130309174	+	752.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010174)	promoter-TSS (NM_010174)	-104.0	NM_010174	14077.0	Mm.388886	NM_010174	ENSMUSG00000028773	Fabp3	Fabph-1|Fabph-4|Fabph1|Fabph4|H-FABP|Mdgi	fatty acid binding protein 3, muscle and heart	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-111328228-3	chr4	111327739	111328739	+	752.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284190, intron 5 of 12)	intron (NM_001284190, intron 5 of 12)	-86767.0	NR_033793	67621.0	Mm.45533	NM_026279	ENSMUSG00000028545	Bend5	2310026E23Rik	BEN domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91842823-2	chr16	91842323	91843323	+	752.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 19 of 28)	intron (NM_001110275, intron 19 of 28)	88807.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101712223-3	chr13	101711731	101712731	+	752.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	-19601.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-22928449-4	chr2	22927967	22928967	+	752.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149721, intron 7 of 10)	intron (NR_149721, intron 7 of 10)	32945.0	NM_001355467	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7270229-3	chr9	7269709	7270709	+	752.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2305.0	NM_008607	17386.0	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77441201-3	chr11	77440705	77441705	+	752.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 12 of 14)	intron (NM_177710, intron 12 of 14)	-22708.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66980645-4	chr9	66980141	66981141	+	752.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5157.0	NM_030717	80907.0	Mm.157882	NM_030717	ENSMUSG00000032370	Lactb	LACT-1|Lact1|Mrpl56	lactamase, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49264068-2	chr13	49263568	49264568	+	752.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 17 of 17)	intron (NM_015759, intron 17 of 17)	-15362.0	NM_028340	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-14152630-2	chr12	14152177	14153177	+	752.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029007)	promoter-TSS (NM_029007)	-639.0	NM_029007	105005.0	Mm.227253	NM_029007	ENSMUSG00000020607	Fam84a	2310003N02Rik|4731402F03Rik|AW125753|Nse1	family with sequence similarity 84, member A	protein-coding	10.0	18.0	5.5	0.5	7.0	6.5
Merged-chr14-101510797-2	chr14	101510297	101511297	+	752.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	98394.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59723232-2	chr15	59722732	59723732	+	752.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71727.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-57622976-4	chr8	57622479	57623479	+	752.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 1 of 11)	ORR1D1|LTR|ERVL-MaLR	-28774.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22309840-3	chr9	22309347	22310347	+	752.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS4|LTR|ERV1	-2209.0	NM_145612	235050.0	Mm.306038	NM_145612	ENSMUSG00000066829	Zfp810	BC005471	zinc finger protein 810	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108404593-3	chr9	108404087	108405087	+	752.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001135198, exon 7 of 7)	3' UTR (NM_001135198, exon 7 of 7)	11753.0	NM_053216	112418.0	Mm.78287	NM_053216	ENSMUSG00000032611	1700102P08Rik	AI593206	RIKEN cDNA 1700102P08 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51046137-3	chr3	51045631	51046631	+	752.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-178316.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr10-111389103-4	chr10	111388602	111389602	+	752.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84125.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32077355-4	chr5	32076875	32077875	+	752.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 11 of 11)	intron (NM_144541, intron 11 of 11)	-59097.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49108929-2	chr11	49108429	49109429	+	752.700012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	4828.0	NM_146337	258334.0	Mm.390388	NM_146337	ENSMUSG00000047511	Olfr1396	MOR276-2	olfactory receptor 1396	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-153922611-1	chr4	153922111	153923111	+	752.666687	f0_balb.idr	Intergenic	Intergenic	27865.0	NR_040670	407793.0	Mm.260950	NR_040670		BC039966	-	cDNA sequence BC039966	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84994059-3	chr15	84993519	84994519	+	752.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6048.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141428614-3	chr7	141428116	141429116	+	752.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021316, intron 1 of 1)	intron (NM_021316, intron 1 of 1)	946.0	NM_001360485	57754.0	Mm.87027	NM_021316	ENSMUSG00000060240	Cend1	1500001H12Rik|AI415214|BM88	cell cycle exit and neuronal differentiation 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69715489-2	chr8	69714976	69715976	+	752.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039967, intron 1 of 5)	intron (NM_001039967, intron 1 of 5)	1426.0	NM_001039967	66869.0	Mm.334581	NM_181274	ENSMUSG00000054648	Zfp869	1200003I07Rik	zinc finger protein 869	protein-coding	6.0	33.5	14.0	10.5	15.5	19.0
Merged-chr14-54926008-2	chr14	54925511	54926511	+	752.666626	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010112, exon 1 of 6)	5' UTR (NM_010112, exon 1 of 6)	777.0	NM_010112	13644.0	Mm.236438	NM_010112	ENSMUSG00000022203	Efs	-	embryonal Fyn-associated substrate	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr7-30436944-2	chr7	30436432	30437432	+	752.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007467, intron 11 of 16)	intron (NM_007467, intron 11 of 16)	8650.0	NM_007467	11803.0	Mm.2381	NM_007467	ENSMUSG00000006651	Aplp1	-	amyloid beta (A4) precursor-like protein 1	protein-coding	0.5	1.0	6.5	4.0	1.0	1.0
Merged-chr19-6361136-2	chr19	6360636	6361636	+	752.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2554.0	NM_011750	22668.0	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-137756522-4	chr6	137756020	137757020	+	752.637512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172733, intron 1 of 8)	B3|SINE|B2	1943.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-52598454-4	chr18	52597937	52598937	+	752.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17478.0	NM_025749	66758.0	Mm.251599	NM_025749	ENSMUSG00000046886	Zfp474	4933409D10Rik|Znf474	zinc finger protein 474	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-37048158-2	chr17	37047658	37048658	+	752.616699	f1_balb.idr|f1_c57bl6.idr	intron (NM_019439, intron 3 of 22)	intron (NM_019439, intron 3 of 22)	2192.0	NM_019439	54393.0	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86464436-2	chr11	86463936	86464936	+	752.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20221.0	NM_029788	76892.0	Mm.262707	NM_029788	ENSMUSG00000020521	Rnft1	0610013E23Rik|AV007605	ring finger protein, transmembrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25812441-2	chr7	25811941	25812941	+	752.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028775, intron 2 of 8)	intron (NM_028775, intron 2 of 8)	4089.0	NM_028775	74134.0	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41054862-3	chr19	41054353	41055353	+	752.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001043228, intron 9 of 10)	intron (NM_001043228, intron 9 of 10)	22260.0	NM_153520	226115.0	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	6.0	4.5	7.0	0.0	9.5	4.0
Merged-chr13-114831522-3	chr13	114831042	114832042	+	752.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13305.0	NM_001113374	17434.0	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17710318-3	chr12	17709919	17710919	+	752.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	19610.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	22.0	92.0	34.0	36.5	33.5	38.0
Merged-chr2-52906677-4	chr2	52906207	52907207	+	752.537476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	48839.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152015784-4	chr1	152015284	152016284	+	752.520813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 1 of 5)	intron (NM_197990, intron 1 of 5)	74536.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70174236-2	chr14	70173736	70174736	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145978, intron 3 of 9)	intron (NM_145978, intron 3 of 9)	2579.0	NM_001253736	213019.0	Mm.283968	NM_145978	ENSMUSG00000022090	Pdlim2	4732462F18Rik|Slim	PDZ and LIM domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42315928-2	chr19	42315428	42316428	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356589, intron 5 of 14)	intron (NM_001356589, intron 5 of 14)	-35758.0	NR_037246	100526549.0		NR_037246	ENSMUSG00000093234	Mir3085	mir-3085|mmu-mir-3085	microRNA 3085	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13653195-2	chr9	13652695	13653695	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013813, intron 1 of 3)	intron (NM_001013813, intron 1 of 3)	-9265.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3628740-1	chr19	3628240	3629240	+	752.5	f1_c57bl6.idr	intron (NM_008513, intron 6 of 22)	intron (NM_008513, intron 6 of 22)	-52991.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	0.0	8.5	3.0	8.5	2.5	0.0
Merged-chr17-87796523-4	chr17	87796015	87797015	+	752.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199251, intron 1 of 1)	intron (NM_199251, intron 1 of 1)	1479.0	NM_199251	210741.0	Mm.312046	NM_199251	ENSMUSG00000050138	Kcnk12	mntk1	potassium channel, subfamily K, member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45701557-2	chr7	45701057	45702057	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009800, intron 3 of 8)	intron (NM_009800, intron 3 of 8)	1590.0	NM_009800	12348.0	Mm.27736	NM_009800	ENSMUSG00000003273	Car11	Ca11	carbonic anhydrase 11	protein-coding	0.0	4.5	0.0	0.0	4.0	0.0
Merged-chr5-110655668-2	chr5	110655168	110656168	+	752.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_027156, exon 7 of 15)	exon (NM_027156, exon 7 of 15)	2217.0	NM_027156	69663.0	Mm.5267	NM_027156	ENSMUSG00000029504	Ddx51	2310061O04Rik|AA537002|C81583|R75505	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr2-22747641-2	chr2	22747141	22748141	+	752.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26686.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90408898-1	chr9	90408398	90409398	+	752.5	f0_balb.idr	Intergenic	RLTR40|LTR|ERVK	-138129.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	1.5	0.0	0.0	1.5	0.0	0.0
Merged-chr4-135964527-2	chr4	135964027	135965027	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356493, intron 1 of 10)	intron (NM_001356493, intron 1 of 10)	802.0	NM_001356493	74246.0	Mm.247946	NM_178389	ENSMUSG00000028671	Gale	2310002A12Rik|AI323962	galactose-4-epimerase, UDP	protein-coding	0.0	17.0	7.0	1.0	0.5	8.0
Merged-chr8-13251615-2	chr8	13251115	13252115	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172750, intron 1 of 6)	intron (NM_172750, intron 1 of 6)	2547.0	NM_172750	234072.0	Mm.132785	NM_172750	ENSMUSG00000031448	Adprhl1	Arh2|D330008N11Rik	ADP-ribosylhydrolase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32171976-2	chr18	32171476	32172476	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011946, intron 1 of 16)	B1_Mur1|SINE|Alu	8887.0	NM_011946	26405.0	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116001825-2	chr11	116001325	116002325	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005608, intron 30 of 39)	intron (NM_001005608, intron 30 of 39)	-8110.0	NR_152190	100038636.0	Mm.450138	NR_152190		B230344G16Rik	-	RIKEN cDNA B230344G16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75473168-2	chr10	75472668	75473668	+	752.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	23658.0	NR_045841	71125.0	Mm.399516	NR_045841		4933407G14Rik	-	RIKEN cDNA 4933407G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96666449-2	chr15	96665949	96666949	+	752.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	-23536.0	NM_001166458	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-54499522-2	chr9	54499022	54500022	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172771, intron 1 of 43)	intron (NM_172771, intron 1 of 43)	2104.0	NM_172771	235380.0	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31197703-2	chr5	31197203	31198203	+	752.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_153680, exon 11 of 15)	exon (NM_153680, exon 11 of 15)	4339.0	NM_001177901	101023.0	Mm.45033	NM_175311	ENSMUSG00000043059	Zfp513	AW990386|D430028M17Rik|Znf513	zinc finger protein 513	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84072760-2	chr17	84072260	84073260	+	752.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5900.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128735156-2	chr8	128734656	128735656	+	752.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5B|DNA|hAT-Charlie	49502.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161180846-4	chr1	161180345	161181345	+	752.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-21531.0	NM_001195189	100502590.0	Mm.449990	NM_001195189	ENSMUSG00000049160	Tex50	4930469G21Rik	testis expressed 50	protein-coding	0.5	8.0	1.0	0.5	5.5	0.0
Merged-chr4-13408308-2	chr4	13407808	13408808	+	752.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-334994.0	NM_001111026	12395.0	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81329973-2	chr7	81329473	81330473	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 20 of 21)	intron (NM_008803, intron 20 of 21)	15261.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-52275945-2	chr14	52275445	52276445	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172601, intron 2 of 7)	B3A|SINE|B2	-3201.0	NM_023434	268741.0	Mm.246237	NM_023434	ENSMUSG00000016831	Tox4	5730589K01Rik|A630040M18|AA410149|LCP1	TOX high mobility group box family member 4	protein-coding	1.5	4.0	2.0	1.5	18.0	2.5
Merged-chr8-24546012-2	chr8	24545512	24546512	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145949, intron 7 of 9)	intron (NM_145949, intron 7 of 9)	30321.0	NM_145949	209176.0	Mm.219580	NM_145949	ENSMUSG00000031549	Ido2	AI265623|C230043N17Rik|Ido-2|Indol1	indoleamine 2,3-dioxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21995640-2	chr13	21995140	21996140	+	752.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14101.0	NM_019429	54373.0	Mm.32043	NM_019429	ENSMUSG00000006179	Prss16	AI448615|TSSP	protease, serine 16 (thymus)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84095969-2	chr17	84095469	84096469	+	752.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17309.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90112056-2	chr9	90111556	90112556	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039147, intron 1 of 12)	intron (NM_001039147, intron 1 of 12)	2764.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	6.5	22.5	10.5	2.5	13.5	21.5
Merged-chr2-27515849-2	chr2	27515349	27516349	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080848, intron 1 of 13)	intron (NM_080848, intron 1 of 13)	702.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4371971-2	chr16	4371471	4372471	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009624, intron 2 of 10)	intron (NM_009624, intron 2 of 10)	48527.0	NM_001291910	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-93856501-2	chr11	93856001	93857001	+	752.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29265.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	0.0	1.5	0.0	3.0	0.0	0.0
Merged-chr2-79088312-2	chr2	79087812	79088812	+	752.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-167114.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5138108-2	chr2	5137608	5138608	+	752.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_028804, exon 1 of 3)	exon (NM_028804, exon 1 of 3)	332.0	NM_028804	74186.0	Mm.274715	NM_028804	ENSMUSG00000026676	Ccdc3	2310045O21Rik	coiled-coil domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25520203-2	chr9	25519703	25520703	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	MER5A|DNA|hAT-Charlie	38606.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-77289802-3	chr5	77289299	77290299	+	752.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17042.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165036082-2	chr2	165035493	165036493	+	752.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1214.0	NM_144892	228869.0	Mm.233080	NM_144892	ENSMUSG00000039804	Ncoa5	CIA	nuclear receptor coactivator 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-85003728-2	chr10	85003228	85004228	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183172, intron 9 of 9)	intron (NM_183172, intron 9 of 9)	86115.0	NM_183172	237422.0	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54157796-2	chr11	54157296	54158296	+	752.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	55492.0	NR_045506	71056.0	Mm.56332	NR_045506	ENSMUSG00000086209	4933405E24Rik	-	RIKEN cDNA 4933405E24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106311141-2	chr1	106310641	106311641	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 3 of 16)	Lx2|LINE|L1	139272.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.5	4.5	0.5	2.0	4.5	0.5
Merged-chr5-120529684-2	chr5	120529184	120530184	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 13 of 13)	intron (NM_001177595, intron 13 of 13)	18492.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97404409-5	chr11	97403909	97404909	+	752.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41858.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-5418503-4	chr5	5418002	5419002	+	752.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-38251.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98975459-3	chr11	98974958	98975958	+	752.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177303)	TTS (NM_001177303)	7558.0	NM_178596	353155.0	Mm.453253	NM_178596	ENSMUSG00000047197	Gjd3	Gja11|Gjc1|cx30.2	gap junction protein, delta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-72468944-3	chr9	72468373	72469373	+	752.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009359, intron 10 of 11)	intron (NM_009359, intron 10 of 11)	23086.0	NM_009359	21778.0	Mm.14485	NM_009359	ENSMUSG00000090626	Tex9	Gm19407|tsec-1	testis expressed gene 9	protein-coding	16.5	26.0	18.0	28.0	25.0	19.5
Merged-chr13-60719948-3	chr13	60719442	60720442	+	752.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 8 of 26)	intron (NM_134062, intron 8 of 26)	66422.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-59206161-3	chr3	59205650	59206650	+	752.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	4732.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126703653-3	chr7	126703189	126704189	+	752.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009898, intron 1 of 10)	intron (NM_009898, intron 1 of 10)	531.0	NM_001301374	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34204074-2	chr17	34203574	34204574	+	752.416626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011530)	promoter-TSS (NM_011530)	-405.0	NM_011530	21355.0	Mm.14814	NM_011530	ENSMUSG00000024339	Tap2	ABC18|AI462429|APT2|Abcb3|Ham-2|Ham2|MTP2|PSF2|RING11|Tap-2|Y1|jas	transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	1.0	5.0	1.5	5.0	22.5	6.5
Merged-chr1-191733939-4	chr1	191733426	191734426	+	752.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134829, intron 2 of 7)	intron (NM_001134829, intron 2 of 7)	15531.0	NM_001134829	226856.0	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110711092-3	chr12	110710600	110711600	+	752.399963	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-14705.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62250299-4	chr18	62249754	62250754	+	752.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70154.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	1.5	12.0	16.5	0.0	1.5	3.0
Merged-chr7-98991494-3	chr7	98990913	98991913	+	752.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 9 of 14)	B2_Mm2|SINE|B2	149731.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	1.0	13.5	9.5	7.0	10.5	6.0
Merged-chr6-5365944-4	chr6	5365458	5366458	+	752.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17428.0	NM_023048	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125583393-3	chr7	125582874	125583874	+	752.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-20055.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	37.5	19.0	44.0	17.5	28.0	26.5
Merged-chr7-28675968-2	chr7	28675501	28676501	+	752.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MURVY-LTR|LTR|ERV1	-16848.0	NM_207238	233040.0	Mm.116116	NM_207238	ENSMUSG00000037463	Fbxo27	E130008B10Rik|FBG5|Gm161	F-box protein 27	protein-coding	0.0	7.0	2.5	7.0	17.5	6.0
Merged-chr17-86952269-2	chr17	86951769	86952769	+	752.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4382.0	NM_029121	74915.0	Mm.159369	NM_029121	ENSMUSG00000053375	Atp6v1e2	4930500C14Rik|Atp6e1|E1	ATPase, H+ transporting, lysosomal V1 subunit E2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100202505-2	chr12	100202005	100203005	+	752.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313934, intron 2 of 5)	intron (NM_001313934, intron 2 of 5)	2361.0	NM_001313934	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42776987-2	chr19	42776489	42777489	+	752.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362410, intron 2 of 16)	B3|SINE|B2	1657.0	NM_001362410	192236.0	Mm.218381	NM_019424	ENSMUSG00000025188	Hps1	6030422N11Rik|BB405864|Gm21361|Hps|ep	HPS1, biogenesis of lysosomal organelles complex 3 subunit 1	protein-coding	5.0	10.5	8.0	2.5	0.0	4.5
Merged-chr18-67167184-1	chr18	67166684	67167684	+	752.333313	f0_balb.idr	intron (NM_177137, intron 4 of 11)	intron (NM_177137, intron 4 of 11)	33624.0	NM_010307	14680.0	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding	3.0	1.5	0.0	0.0	3.5	0.0
Merged-chr9-85206089-3	chr9	85205586	85206586	+	752.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121038.0	NM_001160378	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0.0	1.5	1.5	1.5	0.5	0.5
Merged-chr10-78228385-3	chr10	78227884	78228884	+	752.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081055, intron 3 of 22)	intron (NM_001081055, intron 3 of 22)	16258.0	NM_001081055	216131.0	Mm.27539	NM_001081055	ENSMUSG00000000374	Trappc10	B230307C21Rik|Gm870|Tmem1|b2b2416Clo|b2b2613Clo	trafficking protein particle complex 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132521060-3	chr1	132520633	132521633	+	752.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177129, intron 16 of 22)	intron (NM_177129, intron 16 of 22)	14903.0	NM_029025	74626.0	Mm.34611	NM_029025	ENSMUSG00000048174	Tmem81	4930429O20Rik|AI465369	transmembrane protein 81	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-88910189-3	chr18	88909707	88910707	+	752.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16000.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75231807-2	chr14	75231307	75232307	+	752.333313	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001247984)	TTS (NM_001247984)	-10480.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24645238-4	chr17	24644818	24645818	+	752.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023449)	promoter-TSS (NM_023449)	-361.0	NM_023449	65962.0	Mm.21587	NM_023055	ENSMUSG00000002504	Slc9a3r2	0610011L07Rik|1200011K07Rik|2010007A20Rik|E3karp|NHERF-2|Nherf2|Octs2|Sip-1|Sip1|Sryip1|Tka-1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	protein-coding	0.0	7.5	6.0	2.5	7.5	4.0
Merged-chr7-145124462-3	chr7	145123962	145124962	+	752.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	83657.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	8.5	0.0	3.0	1.5	8.0	1.5
Merged-chr14-51483139-3	chr14	51482606	51483606	+	752.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_3-LTR_MM|LTR|ERVK	31144.0	NM_009486	22301.0	Mm.482572	NM_009486	ENSMUSG00000070448	Vmn2r89	V2r10|V2r11	vomeronasal 2, receptor 89	protein-coding	1.0	4.0	4.0	1.0	0.0	0.5
Merged-chr4-139116439-4	chr4	139115943	139116943	+	752.270813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163006, intron 1 of 3)	intron (NM_001163006, intron 1 of 3)	14594.0	NR_033745	433771.0	Mm.305990	NM_001163006	ENSMUSG00000050608	Minos1	2310028O11Rik	mitochondrial inner membrane organizing system 1	protein-coding	13.0	13.0	12.0	5.5	2.5	7.5
Merged-chr8-70789006-2	chr8	70788506	70789506	+	752.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_199308, exon 5 of 26)	exon (NM_199308, exon 5 of 26)	3427.0	NM_199308	546071.0	Mm.250731	NM_199308	ENSMUSG00000031833	Mast3	BC024265|mKIAA0561	microtubule associated serine/threonine kinase 3	protein-coding	0.0	0.0	3.5	0.0	6.0	0.0
Merged-chr5-115529299-2	chr5	115528799	115529799	+	752.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	22623.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	0.0	6.0	11.5	0.0	3.0	7.0
Merged-chr7-126824865-2	chr7	126824367	126825367	+	752.25	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001146347, exon 1 of 4)	5' UTR (NM_001146347, exon 1 of 4)	214.0	NM_001146347	68952.0	Mm.440393	NM_026884	ENSMUSG00000058966	Fam57b	1500016O10Rik|A330104J06Rik|AI413816|AW060769	family with sequence similarity 57, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95658992-4	chr16	95658494	95659494	+	752.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43413.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65432434-4	chr9	65431920	65432920	+	752.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3362.0	NM_027134	69606.0	Mm.287956	NM_027134	ENSMUSG00000059183	Mtfmt	2310020P08Rik	mitochondrial methionyl-tRNA formyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125343026-2	chr5	125342599	125343599	+	752.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2005.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	6.0	0.0	1.5	0.0	1.0	5.0
Merged-chr4-149683047-4	chr4	149682555	149683555	+	752.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029837, intron 1 of 23)	MTB_Mm|LTR|ERVL-MaLR	-6966.0	NM_001164051	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	1.5	4.0	6.0	0.0	5.5	4.0
Merged-chr7-122068273-2	chr7	122067773	122068773	+	752.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_138589, intron 2 of 6)	intron (NM_138589, intron 2 of 6)	1075.0	NM_138589	28018.0	Mm.282122	NM_138589	ENSMUSG00000030870	Ubfd1	AI467302|D7Wsu105e|D7Wsu128e|Ubph	ubiquitin family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123992781-2	chr4	123992364	123993364	+	752.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75431.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	0.0	0.0	1.0	0.0	2.0	1.0
Merged-chr18-34851831-2	chr18	34851331	34852331	+	752.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9376.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94521223-2	chr16	94520723	94521723	+	752.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 1 of 7)	intron (NM_007834, intron 1 of 7)	5406.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128039607-4	chr8	128039135	128040135	+	752.241699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	238590.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	10.0	8.5	21.5	3.0	24.0	5.0
Merged-chr5-136566499-3	chr5	136565967	136566967	+	752.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291233)	promoter-TSS (NM_001291233)	-486.0	NM_001291233	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-57356431-3	chr2	57355888	57356888	+	752.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010274, intron 11 of 16)	intron (NM_010274, intron 11 of 16)	118006.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116483885-3	chr3	116483391	116484391	+	752.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	24284.0	NM_025517	66368.0	Mm.251228	NM_025517	ENSMUSG00000000339	Rtca	2310009A18Rik|AI450277|RPC|Rtcd1	RNA 3'-terminal phosphate cyclase	protein-coding	2.5	10.5	7.5	2.5	10.5	6.5
Merged-chr11-59519077-4	chr11	59518581	59519581	+	752.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12441.0	NM_172941	268417.0	Mm.239793	NM_172941	ENSMUSG00000020472	Zkscan17	Nizp1|Zfp496|Znf496	zinc finger with KRAB and SCAN domains 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88279392-5	chr1	88278795	88279795	+	752.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1716.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125482558-3	chr7	125482108	125483108	+	752.194458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360659, intron 2 of 7)	MER21C|LTR|ERVL	8934.0	NM_001360659	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	0.5	8.5	12.5	0.0	15.0	1.5
Merged-chr19-46564235-2	chr19	46563735	46564735	+	752.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355233, intron 1 of 6)	intron (NM_001355233, intron 1 of 6)	8947.0	NM_001355233	56350.0	Mm.22085	NM_019718	ENSMUSG00000025035	Arl3	-	ADP-ribosylation factor-like 3	protein-coding	14.0	0.5	1.5	14.0	1.5	1.5
Merged-chr9-121305653-4	chr9	121305135	121306135	+	752.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	8133.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	1.0	8.0	6.0	2.0	4.5	8.0
Merged-chr8-121593722-2	chr8	121593222	121594222	+	752.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026160, intron 2 of 3)	intron (NM_026160, intron 2 of 3)	3254.0	NM_026160	67443.0	Mm.28357	NM_026160	ENSMUSG00000031812	Map1lc3b	1010001C15Rik|Atg8|LC3b|Map1lc3	microtubule-associated protein 1 light chain 3 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-38725428-2	chr9	38724928	38725928	+	752.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145957, intron 6 of 18)	intron (NM_001145957, intron 6 of 18)	7160.0	NM_172767	67776.0	Mm.290950	NM_172767	ENSMUSG00000023186	Vwa5a	5830475I06Rik|AW552491|BCSC-1|E130119J22|Loh11cr2a	von Willebrand factor A domain containing 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-47302817-2	chr4	47302317	47303317	+	752.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 33 of 39)	intron (NM_009928, intron 33 of 39)	-50405.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10033918-2	chr19	10033430	10034430	+	752.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_153790, intron 9 of 10)	intron (NR_153790, intron 9 of 10)	-7618.0	NM_021890	60527.0	Mm.253875	NM_021890	ENSMUSG00000024664	Fads3	AI464531	fatty acid desaturase 3	protein-coding	1.5	2.0	0.0	2.5	10.5	4.5
Merged-chr5-137856600-3	chr5	137856116	137857116	+	752.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133209, intron 2 of 4)	intron (NM_133209, intron 2 of 4)	1433.0	NM_133209	170741.0	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87552065-3	chr6	87551564	87552564	+	752.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18805.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122368276-2	chr2	122367790	122368790	+	752.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013829, intron 1 of 5)	intron (NM_001013829, intron 1 of 5)	628.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	0.0	4.5	6.0	0.0	2.0	4.0
Merged-chr1-135632437-2	chr1	135631937	135632937	+	752.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34661.0	NR_151586	215714.0	Mm.472859	NM_175447		Gm4793	EG215714	predicted gene 4793	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75184099-2	chr14	75183599	75184599	+	752.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	RMER1B|Other|Other	47674.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120417242-2	chr8	120416742	120417742	+	752.083313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71624.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-12035361-3	chr10	12034863	12035863	+	752.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	426139.0	NM_013898	30058.0	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	0.0	2.5	0.0	0.0	0.0	9.5
Merged-chr12-12267231-4	chr12	12266725	12267725	+	752.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	5086.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27662925-4	chr15	27662414	27663414	+	752.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242424, intron 4 of 8)	intron (NM_001242424, intron 4 of 8)	18628.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-73964352-4	chr16	73963828	73964828	+	752.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358493, intron 14 of 28)	intron (NM_001358493, intron 14 of 28)	377739.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11456955-2	chr8	11456455	11457455	+	752.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-20974.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131678737-3	chr1	131678214	131679214	+	752.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9981.0	NM_001311096	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	1.0	4.0	3.0	0.0	10.5	7.5
Merged-chr18-36675153-2	chr18	36674653	36675653	+	752.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146085, intron 10 of 11)	intron (NM_146085, intron 10 of 11)	-4062.0	NM_001360989	67843.0	Mm.273350	NM_026404	ENSMUSG00000033272	Slc35a4	2610030J16Rik	solute carrier family 35, member A4	protein-coding	0.5	0.0	0.5	2.5	3.5	0.5
Merged-chr15-79029074-2	chr15	79028574	79029574	+	752.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008197, exon 1 of 1)	exon (NM_008197, exon 1 of 1)	862.0	NM_008197	14958.0	Mm.24350	NM_008197	ENSMUSG00000096210	H1f0	D130017D06Rik|H1(0)|H1fv	H1 histone family, member 0	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-20940284-3	chr1	20939789	20940789	+	752.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028829)	TTS (NM_028829)	-11337.0	NM_027974	71877.0	Mm.29178	NM_027974	ENSMUSG00000041809	Efhc1	1700029F22Rik|mRib72-1|myoclonin1	EF-hand domain (C-terminal) containing 1	protein-coding	9.0	6.0	4.0	19.5	70.5	50.0
Merged-chr7-80845569-2	chr7	80845069	80846069	+	752.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16539.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60366142-2	chr10	60365642	60366642	+	752.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028732, intron 4 of 6)	(TG)n|Simple_repeat|Simple_repeat	19291.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156147456-3	chr2	156146968	156147968	+	752.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291114, exon 17 of 17)	3' UTR (NM_001291114, exon 17 of 17)	3235.0	NM_025946	67067.0	Mm.371623	NM_025946	ENSMUSG00000067847	Romo1	2010100O12Rik|AI853864	reactive oxygen species modulator 1	protein-coding	4.5	26.5	20.0	10.5	56.0	31.5
Merged-chr15-53723873-1	chr15	53723373	53724373	+	752.0	f0_balb.idr	intron (NM_177225, intron 2 of 4)	intron (NM_177225, intron 2 of 4)	-109594.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53747766-1	chr18	53747266	53748266	+	752.0	f1_balb.idr	Intergenic	Lx8|LINE|L1	-3219.0	NM_178686	225523.0	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding	0.0	0.0	2.0	1.5	0.0	2.5
Merged-chr5-104948107-1	chr5	104947607	104948607	+	752.0	f0_balb.idr	intron (NM_030239, intron 13 of 15)	intron (NM_030239, intron 13 of 15)	34610.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	8.5	4.0	15.5	2.0	6.0	20.0
Merged-chr7-110774899-2	chr7	110774399	110775399	+	752.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009667, intron 1 of 14)	intron (NM_009667, intron 1 of 14)	2295.0	NM_009667	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-79934577-2	chr7	79934077	79935077	+	752.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027420, intron 1 of 5)	intron (NM_027420, intron 1 of 5)	687.0	NM_027420	70420.0	Mm.34266	NM_027420	ENSMUSG00000039043	Arpin	2610034B18Rik	actin-related protein 2/3 complex inhibitor	protein-coding	3.5	9.5	5.0	4.0	6.0	0.5
Merged-chr11-80187107-2	chr11	80186617	80187617	+	752.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028019, intron 1 of 4)	RLTR30C_MM|LTR|ERV1	3245.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	2.0	3.5	12.0	16.0	8.0	2.0
Merged-chr12-40582246-2	chr12	40581746	40582746	+	752.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	136193.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73933845-1	chr17	73933345	73934345	+	752.0	f0_balb.idr	intron (NM_011723, intron 6 of 35)	intron (NM_011723, intron 6 of 35)	16351.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.0	5.0	0.5	0.0	5.0	0.5
Merged-chr1-57429128-3	chr1	57428648	57429648	+	752.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22474.0	NM_001302963	68736.0	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60900667-3	chr11	60900200	60901200	+	752.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13092.0	NM_025294	24083.0	Mm.22780	NM_025294	ENSMUSG00000018931	Natd1	AI256713|F3-2|Gm16515|Gtlf3b	N-acetyltransferase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-75840974-1	chr13	75840474	75841474	+	752.0	f1_balb.idr	intron (NM_053108, intron 1 of 2)	intron (NM_053108, intron 1 of 2)	1088.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	3.0	20.0	15.0	8.0	15.5	15.0
Merged-chr13-58114006-2	chr13	58113506	58114506	+	752.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362415)	promoter-TSS (NM_001362415)	-359.0	NM_001362415	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7786303-2	chr9	7785803	7786803	+	752.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152989, intron 3 of 5)	intron (NR_152989, intron 3 of 5)	1913.0	NR_049191	100885830.0		NR_049191	ENSMUSG00000093615	Mir5618	Gm23685|mmu-mir-5618	microRNA 5618	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100709360-1	chr11	100708860	100709860	+	752.0	f1_c57bl6.idr	intron (NM_001038010, intron 7 of 17)	intron (NM_001038010, intron 7 of 17)	3107.0	NM_001038010	14534.0	Mm.218837	NM_020004	ENSMUSG00000020918	Kat2a	1110051E14Rik|AW212720|Gcn5|Gcn5l2|mmGCN5	K(lysine) acetyltransferase 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8995855-2	chr10	8995355	8996355	+	752.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109785.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126085197-2	chr7	126084697	126085697	+	752.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2786.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr13-73471790-2	chr13	73471290	73472290	+	752.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145376, intron 1 of 13)	MTC|LTR|ERVL-MaLR	4407.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-56191511-2	chr13	56191011	56192011	+	752.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12626.0	NM_001168615	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47899967-1	chr9	47899467	47900467	+	752.0	f0_balb.idr	Intergenic	MER5A|DNA|hAT-Charlie	-81759.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	1.0	0.0	4.0	1.0	0.0	5.0
Merged-chr10-67284286-2	chr10	67283786	67284786	+	752.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001036293, intron 1 of 3)	MIR|SINE|MIR	995.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7221141-2	chr19	7220641	7221641	+	752.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-3525.0	NM_007750	12868.0	Mm.14022	NM_007750	ENSMUSG00000035885	Cox8a	COX8L	cytochrome c oxidase subunit VIIIa	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-49427008-1	chr9	49426508	49427508	+	752.0	f1_c57bl6.idr	promoter-TSS (NM_172922)	promoter-TSS (NM_172922)	13.0	NM_172922	244859.0	Mm.119994	NM_172922	ENSMUSG00000032257	Ankk1	9930020N01Rik	ankyrin repeat and kinase domain containing 1	protein-coding	2.5	4.0	0.5	9.0	23.0	8.0
Merged-chr15-38520765-2	chr15	38520265	38521265	+	752.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-1499.0	NM_018745	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40980340-2	chr4	40979840	40980840	+	752.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290448, intron 2 of 15)	PB1D10|SINE|Alu	9397.0	NM_023739	74164.0	Mm.247456	NM_023739	ENSMUSG00000028423	Nfx1	1300017N15Rik|3000003M19Rik|NFX.1|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7261663-3	chr9	7261221	7262221	+	752.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10793.0	NM_008607	17386.0	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93166411-2	chr2	93165911	93166911	+	752.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21137.0	NM_001356536	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79294006-2	chr11	79293506	79294506	+	752.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39311.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	5.0	8.0	8.5	3.0	17.0	11.0
Merged-chr1-45852897-3	chr1	45852349	45853349	+	752.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57683.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-35708626-2	chr11	35708129	35709129	+	752.0	f0_c57.idr|f1_c57bl6.idr	TTS (NM_011412)	TTS (NM_011412)	-60866.0	NM_145962	211347.0	Mm.255044	NM_145962	ENSMUSG00000018846	Pank3	-	pantothenate kinase 3	protein-coding	19.0	43.5	8.0	10.5	11.5	6.5
Merged-chr6-15818836-2	chr6	15818336	15819336	+	752.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98175.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130638243-1	chr2	130637743	130638743	+	752.0	f1_c57bl6.idr	intron (NM_001291027, intron 1 of 4)	intron (NM_001291027, intron 1 of 4)	4601.0	NM_197945	241638.0	Mm.440130	NM_197945	ENSMUSG00000037703	Lzts3	Prosapip1	leucine zipper, putative tumor suppressor family member 3	protein-coding	4.0	0.0	0.0	0.0	0.0	3.0
Merged-chr2-77267985-2	chr2	77267485	77268485	+	752.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175465, intron 1 of 17)	intron (NM_175465, intron 1 of 17)	12607.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-86463885-2	chr9	86463385	86464385	+	752.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027394, intron 1 of 9)	intron (NM_027394, intron 1 of 9)	1031.0	NM_027394	70348.0	Mm.53469	NM_027394	ENSMUSG00000032415	Ube2cbp	2610018I03Rik|Ube3d	ubiquitin-conjugating enzyme E2C binding protein	protein-coding	3.0	0.0	1.0	1.5	0.0	2.0
Merged-chr7-126622147-2	chr7	126621647	126622647	+	752.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3323.0	NM_019738	56312.0	Mm.18742	NM_019738	ENSMUSG00000030717	Nupr1	2310032H04Rik|Com1|p8	nuclear protein transcription regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-51873878-2	chr12	51873378	51874378	+	752.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44342.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41316615-2	chr19	41316115	41317115	+	752.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 8 of 16)	intron (NM_031376, intron 8 of 16)	-52611.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	25.5	16.5	7.5	0.5	4.5	16.0
Merged-chr2-58759799-2	chr2	58759299	58760299	+	751.916687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289660, intron 2 of 7)	MER5A1|DNA|hAT-Charlie	4615.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64742330-2	chr17	64741874	64742874	+	751.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 20 of 21)	intron (NM_008549, intron 20 of 21)	-24737.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-121179226-4	chr6	121178741	121179741	+	751.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4426.0	NR_130903	74043.0	Mm.491240	NM_028730	ENSMUSG00000067825	Pex26	4632428M11Rik	peroxisomal biogenesis factor 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101278833-3	chr15	101278315	101279315	+	751.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5486.0	NM_026566	68118.0	Mm.482360	NM_026566	ENSMUSG00000037204	Atg101	9430023L20Rik|AA407441|AU022967	autophagy related 101	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54791245-3	chr12	54790761	54791761	+	751.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026998, intron 2 of 13)	RMER17D|LTR|ERVK	4401.0	NM_026998	72183.0	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	15.5	37.5	46.5	11.0	33.0	16.0
Merged-chr12-112113867-3	chr12	112113358	112114358	+	751.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081169, intron 3 of 14)	intron (NM_001081169, intron 3 of 14)	-4549.0	NR_049197	100885836.0		NR_049197	ENSMUSG00000106228	Mir3073b	mir-3073b|mmu-mir-3073b	microRNA 3073b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118650440-2	chr9	118649961	118650961	+	751.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	ORR1A2|LTR|ERVL-MaLR	43752.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-25036529-4	chr16	25036036	25037036	+	751.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23103.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118223837-2	chr11	118223337	118224337	+	751.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-11095.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79093403-2	chr12	79092903	79093903	+	751.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_110486, intron 2 of 2)	L2|LINE|L2	-3733.0	NM_029988	110417.0	Mm.268317	NM_029988	ENSMUSG00000021120	Pigh	2210416H01Rik|A930028P05Rik	phosphatidylinositol glycan anchor biosynthesis, class H	protein-coding	2.0	2.0	0.0	2.0	2.0	0.5
Merged-chr12-32340654-3	chr12	32340181	32341181	+	751.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38108.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38403664-3	chr15	38403161	38404161	+	751.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86886.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84704538-3	chr8	84704021	84705021	+	751.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081981)	TTS (NM_001081981)	3064.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	5.0	4.5	2.5	5.0	0.5	3.5
Merged-chr14-104473237-3	chr14	104472692	104473692	+	751.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5193.0	NM_011143	18996.0	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-108190414-3	chr10	108190018	108191018	+	751.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027892, intron 1 of 25)	intron (NM_027892, intron 1 of 25)	28118.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153118400-4	chr2	153117916	153118916	+	751.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 1 of 12)	L1MA4|LINE|L1	9948.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	22.0	65.0	26.0	22.5	62.0	27.0
Merged-chr11-98963402-2	chr11	98962902	98963902	+	751.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001176528, intron 1 of 7)	intron (NM_001176528, intron 1 of 7)	-1470.0	NM_001361954	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-67636602-4	chr11	67636076	67637076	+	751.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277080, intron 3 of 12)	intron (NM_001277080, intron 3 of 12)	40021.0	NM_001277079	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.0	12.0	5.5	1.5	6.0	3.5
Merged-chr13-35947544-4	chr13	35947123	35948123	+	751.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20283.0	NM_029628	76487.0	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	1.5	1.0	1.0	13.0	1.0	0.5
Merged-chr4-33033037-3	chr4	33032526	33033526	+	751.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355494, intron 1 of 6)	intron (NM_001355494, intron 1 of 6)	1646.0	NM_001355494	56228.0	Mm.259095	NM_019586	ENSMUSG00000028277	Ube2j1	0710008M05Rik|1110030I22Rik|NCUBE-1|Ncube|Ncube1|Ubc6p	ubiquitin-conjugating enzyme E2J 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118126083-3	chr2	118125592	118126592	+	751.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011580, exon 22 of 22)	3' UTR (NM_011580, exon 22 of 22)	14216.0	NM_001313914	21825.0	Mm.4159	NM_011580	ENSMUSG00000040152	Thbs1	TSP-1|TSP1|Thbs-1|tbsp1	thrombospondin 1	protein-coding	6.5	31.0	28.0	13.0	52.5	24.5
Merged-chr17-28702131-4	chr17	28701566	28702566	+	751.767883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	MTE2b|LTR|ERVL-MaLR	9498.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32431788-2	chr16	32431288	32432288	+	751.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163160, intron 1 of 8)	intron (NM_001163160, intron 1 of 8)	558.0	NM_001163160	13026.0	Mm.98775	NM_009981	ENSMUSG00000005615	Pcyt1a	CTalpha|Cctalpha|Ctpct|Cttalpha	phosphate cytidylyltransferase 1, choline, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75153931-4	chr8	75153294	75154294	+	751.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44285.0	NM_008566	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	6.0	15.5	11.5	10.5	27.5	22.5
Merged-chr2-164948672-2	chr2	164948172	164949172	+	751.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_013599, intron 1 of 12)	intron (NM_013599, intron 1 of 12)	453.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24432312-2	chr7	24431812	24432812	+	751.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_199013, exon 3 of 3)	exon (NM_199013, exon 3 of 3)	3220.0	NM_001358034	210145.0	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	0.0	0.0	2.0	0.0	0.0	2.0
Merged-chr7-132765053-3	chr7	132764559	132765559	+	751.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347630, intron 2 of 3)	intron (NM_001347630, intron 2 of 3)	11857.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-96296138-3	chr7	96295621	96296621	+	751.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310760, intron 1 of 32)	MIR|SINE|MIR	-9546.0	NR_105818	102465210.0		NR_105818	ENSMUSG00000099030	Mir6394	Gm27929|mmu-mir-6394	microRNA 6394	ncRNA	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr13-63250256-3	chr13	63249758	63250758	+	751.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	10229.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29670931-3	chr2	29670396	29671396	+	751.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	51176.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-22868200-1	chr5	22867700	22868700	+	751.666687	f1_c57bl6.idr	intron (NM_001359998, intron 1 of 3)	intron (NM_001359998, intron 1 of 3)	-121316.0	NR_027362	330052.0	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	8.5	4.5	25.0	10.0	0.5	4.5
Merged-chr3-54691990-2	chr3	54691490	54692490	+	751.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152184)	promoter-TSS (NR_152184)	-825.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-70611239-3	chr13	70610750	70611750	+	751.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144837, intron 10 of 18)	intron (NM_144837, intron 10 of 18)	26384.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73934880-2	chr17	73934380	73935380	+	751.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 5 of 35)	intron (NM_011723, intron 5 of 35)	15316.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-53820244-2	chr6	53819744	53820744	+	751.666687	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_025817, exon 1 of 1)	5' UTR (NM_025817, exon 1 of 1)	581.0	NM_025817	66873.0	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16228316-2	chr7	16227797	16228797	+	751.666626	f0_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4-int|LTR|ERVK	-6265.0	NM_027883	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	25.5	54.0	23.0	22.5	52.5	37.5
Merged-chr8-120800626-2	chr8	120800126	120801126	+	751.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61987.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-105122521-2	chr9	105122028	105123028	+	751.666626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	9277.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	19.5	56.0	48.5	62.5	97.5	64.5
Merged-chr16-59421046-4	chr16	59420538	59421538	+	751.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081190, intron 2 of 8)	intron (NM_001081190, intron 2 of 8)	13656.0	NM_001081190	328699.0	Mm.451970	NM_001081190	ENSMUSG00000074991	Gabrr3	-	gamma-aminobutyric acid (GABA) receptor, rho 3	protein-coding	0.5	3.0	2.0	0.5	0.0	0.0
Merged-chr7-101388224-2	chr7	101387724	101388724	+	751.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 10 of 33)	intron (NM_001040111, intron 10 of 33)	2698.0	NM_027180	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90565751-2	chr2	90565221	90566221	+	751.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	MIRb|SINE|MIR	14926.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	6.5	3.5	6.0	0.5	5.5	2.0
Merged-chr16-4840463-4	chr16	4839989	4840989	+	751.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030192, intron 1 of 15)	L1MB7|LINE|L1	5073.0	NM_030192	78809.0	Mm.325551	NM_030192	ENSMUSG00000022518	4930562C15Rik	-	RIKEN cDNA 4930562C15 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128058750-4	chr7	128058257	128059257	+	751.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-3883.0	NM_001082960	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44989267-4	chr16	44988759	44989759	+	751.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45581.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71462927-3	chr8	71462406	71463406	+	751.577759	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022419, intron 1 of 4)	intron (NM_022419, intron 1 of 4)	751.0	NM_022419	64296.0	Mm.276383	NM_022419	ENSMUSG00000007950	Abhd8	0910001L24Rik|AB030191	abhydrolase domain containing 8	protein-coding	10.0	19.5	3.5	9.5	8.5	1.5
Merged-chr11-84613239-3	chr11	84612736	84613736	+	751.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	87576.0	NR_038057	78365.0	Mm.260345	NR_038057	ENSMUSG00000087211	Lhx1os	1500016L03Rik|Lhx1as	LIM homeobox 1, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20662415-3	chr9	20661893	20662893	+	751.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023371, exon 3 of 4)	exon (NM_023371, exon 3 of 4)	10263.0	NM_023371	23988.0	Mm.7906	NM_023371	ENSMUSG00000032171	Pin1	0610025L01Rik|D9Bwg1161e	protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75860938-4	chr10	75860460	75861460	+	751.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010798)	promoter-TSS (NM_010798)	-710.0	NM_010798	17319.0	Mm.2326	NM_010798	ENSMUSG00000033307	Mif	GIF|Glif	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-54699613-2	chr9	54699113	54700113	+	751.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021422)	promoter-TSS (NM_021422)	54.0	NM_021422	58233.0	Mm.489676	NM_021422	ENSMUSG00000032285	Dnaja4	1110021L12Rik|AV358213|Dj4|Hsj4|mmDjA4	DnaJ heat shock protein family (Hsp40) member A4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34505277-2	chr19	34504777	34505777	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 6 of 9)	intron (NM_001111100, intron 6 of 9)	22197.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60879534-2	chr2	60879034	60880034	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	1904.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8611292-2	chr11	8610792	8611792	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	53243.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-89982211-2	chr7	89981690	89982690	+	751.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1214.0	NM_021876	13626.0	Mm.380914	NM_021876	ENSMUSG00000030619	Eed	l(7)5Rn|l7Rn5|lusk	embryonic ectoderm development	protein-coding	2.0	6.0	2.0	2.5	4.5	3.0
Merged-chr1-149863367-2	chr1	149862867	149863867	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 12 of 17)	intron (NM_008869, intron 12 of 17)	59072.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108207164-2	chr3	108206664	108207664	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175183, intron 5 of 11)	intron (NM_175183, intron 5 of 11)	3363.0	NM_001289545	72522.0	Mm.187326	NM_175183	ENSMUSG00000048997	Atxn7l2	2610528J18Rik	ataxin 7-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-60757029-2	chr19	60756529	60757529	+	751.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_178421, exon 1 of 1)	exon (NM_178421, exon 1 of 1)	1042.0	NM_178421	332397.0	Mm.186390	NM_178421	ENSMUSG00000072437	Nanos1	NOS-1	nanos C2HC-type zinc finger 1	protein-coding	0.5	2.5	4.0	0.0	0.0	1.5
Merged-chr2-181153912-2	chr2	181153412	181154412	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007906, intron 2 of 7)	intron (NM_007906, intron 2 of 7)	3103.0	NM_007906	13628.0	Mm.2645	NM_007906	ENSMUSG00000016349	Eef1a2	EEF1AL|EF-1-alpha-2|Eef1a|S1|STN|wasted|wst	eukaryotic translation elongation factor 1 alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70003912-2	chr11	70003412	70004412	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007888, intron 1 of 14)	intron (NM_007888, intron 1 of 14)	3286.0	NM_007888	13543.0	Mm.5114	NM_007888	ENSMUSG00000020888	Dvl2	-	dishevelled segment polarity protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80170653-2	chr18	80170153	80171153	+	751.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15586.0	NR_131039	105246506.0	Mm.392326	NR_131039		LOC105246506	-	uncharacterized LOC105246506	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-15198227-2	chr3	15197727	15198727	+	751.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134075.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148492443-2	chr5	148491943	148492943	+	751.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31C_MM|LTR|ERVK	59230.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	11.0	16.5	16.5	3.5	5.5	10.5
Merged-chr5-99222161-2	chr5	99221661	99222661	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 12 of 13)	intron (NM_181318, intron 12 of 13)	30766.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41639289-2	chr4	41638789	41639789	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027147, intron 1 of 1)	intron (NM_027147, intron 1 of 1)	1013.0	NM_027147	69638.0	Mm.372459	NM_027147	ENSMUSG00000028445	Enho	1110065P19Rik|2310040A07Rik	energy homeostasis associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-18275085-2	chr14	18274585	18275585	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316712, intron 1 of 3)	MT2B|LTR|ERVL	3949.0	NM_023526	69721.0	Mm.25648	NM_023526	ENSMUSG00000021772	Nkiras1	2400004O09Rik|KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras-like protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101128326-2	chr15	101127859	101128859	+	751.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277259)	promoter-TSS (NM_001277259)	-163.0	NM_001277258	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	0.0	0.0	2.5	3.5	0.0	0.5
Merged-chr4-154105491-2	chr4	154104989	154105989	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011642, intron 1 of 13)	intron (NM_011642, intron 1 of 13)	-8316.0	NM_001126331	22062.0	Mm.78015	NM_011642	ENSMUSG00000029026	Trp73	TAp73|Tp73|deltaNp73|p73	transformation related protein 73	protein-coding	0.0	0.0	0.0	0.0	0.0	2.5
Merged-chr4-130916231-2	chr4	130915731	130916731	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	2897.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112296773-2	chr5	112296273	112297273	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	20082.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	6.5	1.5	0.5	0.0	0.0	1.5
Merged-chr2-11688293-2	chr2	11687793	11688793	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008367, intron 7 of 7)	intron (NM_008367, intron 7 of 7)	-17000.0	NM_001271498	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-15195263-2	chr18	15194763	15195763	+	751.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43817.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35922631-2	chr17	35922131	35923131	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357740, intron 1 of 18)	intron (NM_001357740, intron 1 of 18)	3359.0	NM_001357740	52040.0	Mm.29385	NM_175934	ENSMUSG00000039220	Ppp1r10	2610025H06Rik|Cat53|D17Ertd808e|Fb19|Pnuts	protein phosphatase 1, regulatory subunit 10	protein-coding	0.0	0.0	7.0	5.0	0.0	2.5
Merged-chr11-118155113-2	chr11	118154613	118155613	+	751.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-25894.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110443219-2	chr5	110442719	110443719	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317042, intron 1 of 2)	intron (NM_001317042, intron 1 of 2)	5284.0	NM_001317042	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr17-71482654-2	chr17	71482148	71483148	+	751.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7305.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	0.5	4.0	1.5	0.0	1.0	5.0
Merged-chr2-53669239-2	chr2	53668739	53669739	+	751.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	416313.0	NM_023396	67874.0	Mm.27086	NM_023396	ENSMUSG00000075334	Rprm	2410012A13Rik|Reprimo	reprimo, TP53 dependent G2 arrest mediator candidate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5056160-2	chr11	5055660	5056660	+	751.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001190406, exon 5 of 5)	3' UTR (NM_001190406, exon 5 of 5)	-1968.0	NM_145216	75668.0	Mm.374836	NM_145216	ENSMUSG00000034209	Rasl10a	2210403B10Rik|AI852688	RAS-like, family 10, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24039300-2	chr17	24038800	24039800	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175440, intron 1 of 5)	intron (NM_175440, intron 1 of 5)	1057.0	NM_175440	213171.0	Mm.133083	NM_175440	ENSMUSG00000050762	Prss27	CAPH2|Mpn|marapsin	protease, serine 27	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr1-62767033-2	chr1	62766533	62767533	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 10 of 16)	intron (NM_001077404, intron 10 of 16)	27699.0	NR_040601	74992.0	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170164519-2	chr1	170164019	170165019	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133806, intron 2 of 10)	intron (NM_133806, intron 2 of 10)	10445.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25108486-2	chr7	25107986	25108986	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163556, intron 5 of 13)	B1F2|SINE|Alu	-11311.0	NR_105855	102465968.0		NR_105855	ENSMUSG00000098441	Mir6537	Gm27808|mmu-mir-6537	microRNA 6537	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37506567-2	chr19	37506067	37507067	+	751.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41313.0	NR_131009	78640.0	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	0.0	0.0	0.0	0.0	1.5	2.5
Merged-chr6-90597182-2	chr6	90596682	90597682	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356412, intron 21 of 22)	intron (NM_001356412, intron 21 of 22)	-7698.0	NM_027868	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75996531-2	chr18	75996031	75997031	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145356, intron 2 of 4)	intron (NM_145356, intron 2 of 4)	-62795.0	NM_001357506	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	0.0	10.5	0.0	0.0	0.0	1.0
Merged-chr2-32289722-2	chr2	32289222	32290222	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080968, intron 1 of 25)	B3|SINE|B2	1469.0	NM_001080968	99412.0	Mm.106376	NM_133852	ENSMUSG00000002546	Golga2	AW555139|GM130|mKIAA4150	golgi autoantigen, golgin subfamily a, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70511991-2	chr8	70511491	70512491	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151735, intron 1 of 1)	Lx7|LINE|L1	1505.0	NR_151735	78183.0	Mm.297372	NR_151735		4930522P08Rik	-	RIKEN cDNA 4930522P08 gene	ncRNA	17.0	25.5	19.5	17.0	26.0	19.5
Merged-chr10-62553088-2	chr10	62552588	62553588	+	751.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	25369.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62696139-3	chr4	62695650	62696650	+	751.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134257, intron 11 of 15)	intron (NM_134257, intron 11 of 15)	22176.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr3-87365347-4	chr3	87364845	87365845	+	751.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009690, intron 2 of 5)	intron (NM_009690, intron 2 of 5)	7464.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	10.0	18.5	12.0	1.5	25.5	17.5
Merged-chr17-49436716-3	chr17	49436234	49437234	+	751.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020042, intron 3 of 10)	intron (NM_020042, intron 3 of 10)	8370.0	NM_020042	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	0.0	4.5	0.5	0.0	4.5	0.5
Merged-chr7-46714669-3	chr7	46714219	46715219	+	751.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011315, intron 2 of 3)	intron (NM_011315, intron 2 of 3)	957.0	NM_011315	20210.0	Mm.14277	NM_011315	ENSMUSG00000040026	Saa3	AV098916|Saa-3|l7R3	serum amyloid A 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4225354-4	chr7	4224852	4225852	+	751.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-12402.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	4.0	8.5	12.5	7.0	10.5	5.5
Merged-chr2-90489869-2	chr2	90489369	90490369	+	751.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-10695.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25045480-2	chr17	25044987	25045987	+	751.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_134126, intron 13 of 29)	intron (NM_134126, intron 13 of 29)	29401.0	NM_134126	106633.0	Mm.32802	NM_134126	ENSMUSG00000024169	Ift140	AI661311|Tce5|Wdtc2|mKIAA0590	intraflagellar transport 140	protein-coding	5.0	13.5	13.0	0.5	7.0	4.0
Merged-chr17-17911622-2	chr17	17911122	17912122	+	751.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23798.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0.0	0.5	2.0	3.5	0.0	0.0
Merged-chr6-72736627-2	chr6	72736127	72737127	+	751.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001079822, intron 3 of 12)	intron (NM_001079822, intron 3 of 12)	52418.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55592333-2	chr14	55591833	55592833	+	751.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_194346, intron 2 of 20)	intron (NM_194346, intron 2 of 20)	591.0	NM_194346	268749.0	Mm.23748	NM_194346	ENSMUSG00000047098	Rnf31	AL033293|BC031509|Flj10111|HOIP|Paul|mFLJ00217	ring finger protein 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23743756-2	chr17	23743256	23744256	+	751.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_028416, exon 4 of 10)	exon (NM_028416, exon 4 of 10)	2073.0	NM_028416	73016.0	Mm.221319	NM_028416	ENSMUSG00000040680	Kremen2	2900054E04Rik|Krm2	kringle containing transmembrane protein 2	protein-coding	0.0	4.0	1.5	0.0	0.0	2.0
Merged-chr3-21936835-4	chr3	21936263	21937263	+	751.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139889.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22306392-2	chr9	22305892	22306892	+	751.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_145612, intron 1 of 7)	intron (NM_145612, intron 1 of 7)	1246.0	NM_145612	235050.0	Mm.306038	NM_145612	ENSMUSG00000066829	Zfp810	BC005471	zinc finger protein 810	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84701643-3	chr17	84701132	84702132	+	751.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18511.0	NM_026180	67470.0	Mm.26581	NM_026180	ENSMUSG00000024254	Abcg8	1300003C16Rik|AI114946|sterolin-2	ATP binding cassette subfamily G member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152212168-3	chr3	152211626	152212626	+	751.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355374, intron 1 of 19)	intron (NM_001355374, intron 1 of 19)	1704.0	NM_001355374	51886.0	Mm.278922	NM_057172	ENSMUSG00000028034	Fubp1	9530027K12Rik|D3Ertd330e|FBP|Fubp|Fubp4	far upstream element (FUSE) binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102209985-3	chr11	102209471	102210471	+	751.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077696, intron 3 of 26)	intron (NM_001077696, intron 3 of 26)	20179.0	NR_106179	102465892.0		NR_106179	ENSMUSG00000098863	Mir8101	Gm27705|mmu-mir-8101	microRNA 8101	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74394654-2	chr1	74394154	74395154	+	751.299988	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029743)	TTS (NR_029743)	344.0	NR_029743	387219.0		NR_029743	ENSMUSG00000065468	Mir26b	Mirn26b|mir-26b|mmu-mir-26b	microRNA 26b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88274785-3	chr1	88274266	88275266	+	751.299988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198652, intron 3 of 7)	intron (NM_198652, intron 3 of 7)	2791.0	NM_172505	212427.0	Mm.384762	NM_172505		A730008H23Rik	Fleg1	RIKEN cDNA A730008H23 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66883830-3	chr15	66883348	66884348	+	751.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7545.0	NM_018865	22402.0	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	4.0	0.0	4.0	0.0	8.5	2.0
Merged-chr2-59975915-2	chr2	59975415	59976415	+	751.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 6 of 35)	intron (NM_001001182, intron 6 of 35)	-93309.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152111214-3	chr3	152110712	152111712	+	751.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016867, intron 3 of 5)	intron (NM_016867, intron 3 of 5)	54688.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116490723-4	chr7	116490233	116491233	+	751.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID|SINE|ID	-13636.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25354198-2	chr15	25353698	25354698	+	751.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59566.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171767162-3	chr1	171766688	171767688	+	751.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013730)	promoter-TSS (NM_013730)	56.0	NM_001360898	27218.0	Mm.103648	NM_013730	ENSMUSG00000015316	Slamf1	4933415F16|AA177906|CD150|CDw150|ESTM51|IPO-3|Slam	signaling lymphocytic activation molecule family member 1	protein-coding	6.0	8.0	2.5	6.0	8.5	2.5
Merged-chr2-173562125-2	chr2	173561586	173562586	+	751.208374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16255.0	NM_001199955	70065.0	Mm.425115	NM_027303	ENSMUSG00000027517	Ankrd60	1700019A24Rik|1700030G11Rik	ankyrin repeat domain 60	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr14-55536383-2	chr14	55535883	55536883	+	751.200012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3883.0	NM_028994	74551.0	Mm.29856	NM_028994	ENSMUSG00000040618	Pck2	1810010O14Rik|9130022B02Rik|PEPCK-M	phosphoenolpyruvate carboxykinase 2 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40682666-3	chr19	40682102	40683102	+	751.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	22832.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	14.5	24.0	11.5	11.0	34.0	20.0
Merged-chr14-70176745-2	chr14	70176245	70177245	+	751.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253736)	promoter-TSS (NM_001253736)	70.0	NM_001253736	213019.0	Mm.283968	NM_145978	ENSMUSG00000022090	Pdlim2	4732462F18Rik|Slim	PDZ and LIM domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-74909314-2	chr7	74908814	74909814	+	751.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-120897.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-71218589-2	chr10	71218089	71219089	+	751.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16844.0	NR_131003	78638.0	Mm.71171	NR_131003	ENSMUSG00000112028	1700113B09Rik	-	RIKEN cDNA 1700113B09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80877116-2	chr12	80876616	80877616	+	751.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_178682, exon 6 of 6)	exon (NM_178682, exon 6 of 6)	47331.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135780628-4	chr5	135780146	135781146	+	751.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008617, intron 1 of 8)	intron (NM_008617, intron 1 of 8)	1997.0	NM_008617	17448.0	Mm.297096	NM_008617	ENSMUSG00000019179	Mdh2	MDH|Mdh-2|Mor-1|Mor1	malate dehydrogenase 2, NAD (mitochondrial)	protein-coding	3.0	0.0	1.0	0.0	7.5	0.0
Merged-chr3-98042513-4	chr3	98042006	98043006	+	751.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	28968.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-126073465-3	chr2	126072968	126073968	+	751.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008008, intron 2 of 3)	intron (NM_008008, intron 2 of 3)	38810.0	NM_008008	14178.0	Mm.330557	NM_008008	ENSMUSG00000027208	Fgf7	Kgf	fibroblast growth factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34348445-3	chr7	34347952	34348952	+	751.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025948, intron 9 of 10)	intron (NM_025948, intron 9 of 10)	41253.0	NM_001360654	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-19698912-2	chr13	19698362	19699362	+	751.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1102.0	NM_181591	73412.0	Mm.279939	NM_181591	ENSMUSG00000041138	Nme8	1700056P15Rik|Sptrx-2|Txndc3	NME/NM23 family member 8	protein-coding	7.5	0.0	0.0	0.5	0.0	0.0
Merged-chr1-134417743-2	chr1	134417243	134418243	+	751.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001306069, intron 1 of 7)	intron (NM_001306069, intron 1 of 7)	2079.0	NM_001306069	72674.0	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82235782-2	chr11	82235282	82236282	+	751.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55970.0	NM_011329	20290.0	Mm.1283	NM_011329	ENSMUSG00000020702	Ccl1	BF534335|I-309|P500|Scya1|Tca-3|Tca3	chemokine (C-C motif) ligand 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41647163-2	chr19	41646657	41647657	+	751.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_015748, intron 11 of 36)	intron (NM_015748, intron 11 of 36)	58506.0	NR_106166	102465884.0		NR_106166	ENSMUSG00000098286	Mir8091	Gm27575|mmu-mir-8091	microRNA 8091	ncRNA	6.5	0.0	2.5	0.0	3.5	4.0
Merged-chr13-64254324-3	chr13	64253822	64254822	+	751.083313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NR_045798, intron 1 of 2)	B1_Mus2|SINE|Alu	5622.0	NR_045798	66503.0	Mm.443331	NR_045798	ENSMUSG00000097101	1810034E14Rik	-	RIKEN cDNA 1810034E14 gene	ncRNA	9.0	16.0	3.5	11.0	20.0	8.5
Merged-chr9-89872380-4	chr9	89871903	89872903	+	751.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37372.0	NM_001357744	19417.0	Mm.44561	NM_011245	ENSMUSG00000032356	Rasgrf1	AI844718|CDC25|CDC25Mm|Gnrp|Grf1|Grfbeta|P190-A|Ras-GRF1|p190|p190RhoGEF	RAS protein-specific guanine nucleotide-releasing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184730895-4	chr1	184730394	184731394	+	751.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008250, intron 1 of 3)	intron (NM_008250, intron 1 of 3)	1599.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-42896699-3	chr9	42896220	42897220	+	751.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175481, intron 1 of 20)	intron (NM_175481, intron 1 of 20)	47651.0	NM_175481	110637.0	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129884270-3	chr4	129883787	129884787	+	751.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21939.0	NR_045190	319894.0	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	9.0	22.0	21.0	12.0	35.0	13.5
Merged-chr18-35745435-4	chr18	35744952	35745952	+	751.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11D|LTR|ERVK	-4898.0	NM_001289592	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	5.0	34.5	31.5	5.5	35.5	17.0
Merged-chr15-102378029-2	chr15	102377529	102378529	+	751.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11061.0	NM_001348205	170574.0	Mm.263284	NM_130458	ENSMUSG00000060284	Sp7	6430578P22Rik|C22|Osx	Sp7 transcription factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117361245-2	chr8	117360745	117361745	+	751.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	12075.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-36024782-1	chr8	36024282	36025282	+	751.0	f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-70046.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	0.0	0.0	1.0	0.0	1.5	1.5
Merged-chr11-81983226-2	chr11	81982726	81983726	+	751.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR3a|LTR|Gypsy	-14830.0	NM_001034013	11418.0	Mm.234998	NM_007384	ENSMUSG00000020704	Asic2	ACIC2|Accn1|BNC1|BNaC1|BNaC1a|Mdeg	acid-sensing (proton-gated) ion channel 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141411090-2	chr7	141410590	141411590	+	751.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172116, exon 3 of 8)	exon (NM_172116, exon 3 of 8)	3035.0	NM_172116	213350.0	Mm.290953	NM_172116	ENSMUSG00000051007	Gatd1	BC023835|D230016J19Rik|Pddc1	glutamine amidotransferase like class 1 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30709258-2	chr2	30708758	30709758	+	751.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11952.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127364392-2	chr7	127363892	127364892	+	751.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12D|LTR|ERVK	11658.0	NM_175560	269997.0	Mm.221270	NM_175560	ENSMUSG00000054381	Zfp747	6430604K15Rik	zinc finger protein 747	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8909726-2	chr4	8909226	8910226	+	751.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	158402.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106163464-3	chr1	106162958	106163958	+	751.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040630, intron 2 of 2)	intron (NR_040630, intron 2 of 2)	8066.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34879758-1	chr19	34879258	34880258	+	751.0	f0_balb.idr	promoter-TSS (NM_001114339)	promoter-TSS (NM_001114339)	-303.0	NM_001114339	75735.0	Mm.24742	NM_023792	ENSMUSG00000033610	Pank1	Pank|Pank1b	pantothenate kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44698775-1	chr10	44698275	44699275	+	751.0	f0_balb.idr	Intergenic	Intergenic	-240027.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106450327-1	chr9	106449827	106450827	+	751.0	f1_balb.idr	intron (NM_029631, intron 2 of 3)	intron (NM_029631, intron 2 of 3)	1687.0	NM_029631	76491.0	Mm.335427	NM_029631	ENSMUSG00000042073	Abhd14b	1810013B01Rik	abhydrolase domain containing 14b	protein-coding	0.0	0.0	4.5	2.0	4.0	0.0
Merged-chr9-118791559-2	chr9	118791059	118792059	+	751.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 3 of 13)	intron (NM_001113514, intron 3 of 13)	79867.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95849466-2	chr11	95848966	95849966	+	751.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	6221.0	NM_001284397	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75926274-2	chr15	75925774	75926774	+	751.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357005, intron 6 of 10)	intron (NM_001357005, intron 6 of 10)	3456.0	NM_031201	22122.0	Mm.22596	NM_031201	ENSMUSG00000022570	Tsta3	AI256181|FX|Tstap35b	tissue specific transplantation antigen P35B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153996872-3	chr1	153996361	153997361	+	751.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	96932.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121599502-2	chr14	121599005	121600005	+	751.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347596, intron 34 of 52)	intron (NM_001347596, intron 34 of 52)	-94251.0	NM_053079	56643.0	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	6.5	3.0	6.0	2.0	5.0	8.0
Merged-chr8-106413109-2	chr8	106412609	106413609	+	751.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2230.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-45609517-1	chr16	45609017	45610017	+	751.0	f1_c57bl6.idr	promoter-TSS (NM_008099)	promoter-TSS (NM_008099)	-923.0	NM_008099	14525.0	Mm.4799	NM_008099	ENSMUSG00000022659	Gcsam	Gcet|Gcet2|M17|M17-L	germinal center associated, signaling and motility	protein-coding	6.0	22.5	12.5	1.0	2.5	5.0
Merged-chr11-58914880-2	chr11	58914387	58915387	+	751.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3170.0	NM_138678	192194.0	Mm.22540	NM_138678	ENSMUSG00000020490	Btnl10	BUTR-1|Butr1	butyrophilin-like 10	protein-coding	0.0	16.5	23.5	0.5	6.5	9.0
Merged-chr4-131917747-2	chr4	131917247	131918247	+	751.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_102394, intron 1 of 2)	intron (NR_102394, intron 1 of 2)	2282.0	NR_102394	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96985975-2	chr11	96985475	96986475	+	751.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8287.0	NM_001080964	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-5098185-2	chr7	5097685	5098685	+	751.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001252454)	TTS (NM_001252454)	17950.0	NM_001252454	13854.0	Mm.3091	NM_010147	ENSMUSG00000035203	Epn1	AA269831|Ibp1	epsin 1	protein-coding	0.0	1.0	2.0	0.5	0.0	1.0
Merged-chr14-30464744-2	chr14	30464244	30465244	+	751.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028981, intron 1 of 46)	B4|SINE|B4	6708.0	NR_131095	77710.0	Mm.410773	NR_131095		4831407H17Rik	-	RIKEN cDNA 4831407H17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28340795-2	chr7	28340295	28341295	+	751.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-2076.0	NM_013676	20924.0	Mm.285906	NM_013676	ENSMUSG00000003435	Supt5	AL033283|AL033321|AU019549|Spt5|Supt5h	suppressor of Ty 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-22303812-1	chr10	22303312	22304312	+	751.0	f1_balb.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-2908.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0.0	7.0	4.0	3.0	6.0	6.5
Merged-chr3-30812999-2	chr3	30812499	30813499	+	751.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357528, intron 6 of 8)	ID4|SINE|ID	20123.0	NM_001357528	69276.0	Mm.26017	NM_027016	ENSMUSG00000027706	Sec62	3100002M17Rik|AI844545|AW545092|Dtrp1|HTP1|Tloc1	SEC62 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107036795-3	chr3	107036335	107037335	+	751.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008418, exon 1 of 1)	exon (NM_008418, exon 1 of 1)	673.0	NM_008418	16491.0	Mm.30640	NM_008418	ENSMUSG00000047959	Kcna3	Kca1-3|Kv1.3|Mk-3	potassium voltage-gated channel, shaker-related subfamily, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54936743-3	chr6	54936242	54937242	+	751.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171007, intron 7 of 11)	intron (NM_001171007, intron 7 of 11)	34919.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128972858-1	chr6	128972358	128973358	+	751.0	f1_c57bl6.idr	intron (NM_001316752, intron 1 of 5)	intron (NM_001316752, intron 1 of 5)	1698.0	NM_001168223	70809.0	Mm.439891	NM_027562	ENSMUSG00000000248	Clec2g	4632413B12Rik|Clr-c|Clr-d|Clrc|Clrd|Clrx|Ddv10|Ocilrp1	C-type lectin domain family 2, member g	protein-coding	17.0	10.0	10.0	3.0	12.0	14.0
Merged-chr1-151657284-1	chr1	151656784	151657784	+	751.0	f0_balb.idr	intron (NM_022018, intron 5 of 13)	intron (NM_022018, intron 5 of 13)	85911.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52979856-3	chr2	52979368	52980368	+	751.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	B1_Mur2|SINE|Alu	122000.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127451240-2	chr3	127450740	127451740	+	751.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	MLT2B1|LTR|ERVL	-42182.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	2.5	0.0	0.0	3.5	0.5	2.5
Merged-chr12-85665581-2	chr12	85665081	85666081	+	751.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21139.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5654053-2	chr17	5653553	5654553	+	751.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 2 of 8)	intron (NM_146073, intron 2 of 8)	-144604.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105693483-2	chr5	105692983	105693983	+	751.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6486.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	12.0	20.5	7.0	3.0	23.0	8.0
Merged-chr5-114383041-2	chr5	114382541	114383541	+	751.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331219, intron 1 of 26)	intron (NM_001331219, intron 1 of 26)	2421.0	NR_138602	117146.0	Mm.28792	NM_054093	ENSMUSG00000029577	Ube3b	AI449831|AU020130	ubiquitin protein ligase E3B	protein-coding	1.0	0.0	2.0	1.0	0.0	2.5
Merged-chr9-111055082-1	chr9	111054582	111055582	+	751.0	f0_balb.idr	3' UTR (NM_001302376, exon 3 of 3)	3' UTR (NM_001302376, exon 3 of 3)	2162.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80353992-3	chr7	80353490	80354490	+	751.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172903, intron 21 of 23)	intron (NM_172903, intron 21 of 23)	10853.0	NM_026812	68695.0	Mm.21171	NM_026812	ENSMUSG00000030532	Hddc3	1110033O09Rik|C86475|MESH1	HD domain containing 3	protein-coding	2.0	4.5	3.0	5.0	5.5	3.0
Merged-chr5-90765417-2	chr5	90764917	90765917	+	751.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-3101.0	NM_023785	57349.0	Mm.293614	NM_023785	ENSMUSG00000029372	Ppbp	2400003M24Rik|AI854500|CTAP3|CTAPIII|Cxcl7|LA-PF4|LDGF|MDGF|NAP-2|NAP-2-L1|Scyb7|TGB|TGB1|THBGB1|b-TG1|beta-TG	pro-platelet basic protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122392968-2	chr5	122392468	122393468	+	751.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019824, intron 1 of 6)	B4A|SINE|B4	1090.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-72027134-1	chr1	72026634	72027634	+	751.0	f0_balb.idr	Intergenic	Intergenic	-21939.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28402394-2	chr7	28401894	28402894	+	751.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175021, intron 11 of 12)	intron (NM_175021, intron 11 of 12)	9398.0	NM_019458	54624.0	Mm.7916	NM_019458	ENSMUSG00000003437	Paf1	5730511K23Rik|AA675045	Paf1, RNA polymerase II complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45230000-2	chr7	45229500	45230500	+	751.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285498, intron 9 of 11)	intron (NM_001285498, intron 9 of 11)	8839.0	NM_007645	12493.0	Mm.3689	NM_007645	ENSMUSG00000030798	Cd37	Tspan26	CD37 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-41825096-1	chr8	41824596	41825596	+	751.0	f0_balb.idr	Intergenic	Intergenic	-2171.0	NR_045497	69966.0	Mm.416903	NR_045497	ENSMUSG00000102046	2810404M03Rik	-	RIKEN cDNA 2810404M03 gene	ncRNA	17.5	0.0	9.0	6.5	1.5	7.0
Merged-chr6-29244736-2	chr6	29244236	29245236	+	751.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-27752.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59816171-1	chr4	59815671	59816671	+	751.0	f0_balb.idr	intron (NM_172468, intron 1 of 8)	LTR33A|LTR|ERVL	10521.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	6.0	15.5	1.0	4.0	10.5	5.0
Merged-chr14-8478939-2	chr14	8478439	8479439	+	751.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028934, intron 13 of 15)	RSINE1|SINE|B4	-100176.0	NM_146050	18300.0	Mm.25351	NM_146050	ENSMUSG00000021749	Oit1	2310076N21Rik|AV067083|EF-7|Fam3d	oncoprotein induced transcript 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-81694678-6	chr4	81694246	81695246	+	751.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-207733.0	NR_030570	100124446.0		NR_030570	ENSMUSG00000077941	Mir466h	Mirn466h	microRNA 466h	ncRNA	6.5	6.0	5.0	11.0	2.5	3.0
Merged-chr13-107744032-2	chr13	107743532	107744532	+	751.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145456, exon 7 of 15)	exon (NM_145456, exon 7 of 15)	56635.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-74580146-1	chr16	74579646	74580646	+	751.0	f1_c57bl6.idr	intron (NM_001358493, intron 1 of 28)	Lx5|LINE|L1	-168321.0	NM_175549	268902.0	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr19-42139966-3	chr19	42139482	42140482	+	750.972229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-7407.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-107944965-4	chr5	107944478	107945478	+	750.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	L1MD1|LINE|L1	42099.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	2.5	5.0	8.5	2.5	1.5	9.0
Merged-chr9-108663037-3	chr9	108662530	108663530	+	750.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020520, intron 1 of 8)	intron (NM_020520, intron 1 of 8)	932.0	NM_020520	57279.0	Mm.29666	NM_020520	ENSMUSG00000032602	Slc25a20	1110007P09Rik|C78826|Cact|mCAC	solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20	protein-coding	22.5	25.5	13.0	25.0	25.5	9.5
Merged-chr3-136761767-4	chr3	136761232	136762232	+	750.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	91666.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	1.0	0.0	0.5
Merged-chr2-120577997-2	chr2	120577497	120578497	+	750.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009222, intron 1 of 7)	PB1D9|SINE|Alu	10326.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12737772-2	chr18	12737272	12738272	+	750.916626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028341)	TTS (NM_028341)	-3583.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-115085815-3	chr4	115085332	115086332	+	750.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2876.0	NM_001164558	67182.0	Mm.30181	NM_026018	ENSMUSG00000028716	Pdzk1ip1	0610007F13Rik|2700030M23Rik|AU046042|Map17	PDZK1 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr7-35595048-3	chr7	35594551	35595551	+	750.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152519, intron 2 of 28)	intron (NR_152519, intron 2 of 28)	8804.0	NR_152519	245886.0	Mm.272620	NM_145633	ENSMUSG00000034867	Ankrd27	AA408090|BC016493|D330003H11Rik|Varp	ankyrin repeat domain 27 (VPS9 domain)	protein-coding	4.5	8.5	4.5	18.5	14.5	13.5
Merged-chr11-54070051-3	chr11	54069515	54070515	+	750.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019417)	promoter-TSS (NM_019417)	-998.0	NM_019417	30794.0	Mm.21830	NM_019417	ENSMUSG00000020388	Pdlim4	Ril	PDZ and LIM domain 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119406755-3	chr13	119406235	119407235	+	750.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308506, intron 1 of 16)	intron (NM_001308506, intron 1 of 16)	2276.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-63969828-3	chr5	63969349	63970349	+	750.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145923)	promoter-TSS (NM_145923)	-952.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	1.5	14.5	3.0	0.0	6.5	2.0
Merged-chr16-46022697-4	chr16	46022146	46023146	+	750.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12233.0	NM_001134480	433022.0	Mm.380993	NM_001134480	ENSMUSG00000087141	Plcxd2	AW494639|EG433022	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-11940254-2	chr18	11939754	11940754	+	750.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_022021, intron 7 of 8)	B1F2|SINE|Alu	-99816.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150120539-2	chr4	150120039	150121039	+	750.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019741, intron 2 of 13)	intron (NM_019741, intron 2 of 13)	1195.0	NM_019741	56485.0	Mm.260220	NM_019741	ENSMUSG00000028976	Slc2a5	AI526984|Glut5|Slc5a	solute carrier family 2 (facilitated glucose transporter), member 5	protein-coding	0.0	0.0	2.5	6.0	0.0	1.0
Merged-chr10-127674312-2	chr10	127673812	127674812	+	750.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-2753.0	NM_173732	210035.0	Mm.251075	NM_173732	ENSMUSG00000040195	Nemp1	Tmem194|Tmem194a	nuclear envelope integral membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142901589-4	chr5	142901057	142902057	+	750.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5197.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-80842096-2	chr1	80841596	80842596	+	750.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-83543.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122135278-3	chr7	122134769	122135769	+	750.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021608, intron 3 of 5)	intron (NM_021608, intron 3 of 5)	2228.0	NM_021608	59288.0	Mm.478285	NM_021608	ENSMUSG00000030868	Dctn5	4930427E12Rik|C78178|b2b315Clo	dynactin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-47278515-6	chr4	47277953	47278953	+	750.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 14 of 39)	intron (NM_009928, intron 14 of 39)	70441.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105292423-3	chr5	105291922	105292922	+	750.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194336, intron 1 of 10)	intron (NM_194336, intron 1 of 10)	1277.0	NM_194336	100702.0	Mm.491210	NM_194336	ENSMUSG00000104713	Gbp6	AI595338|Mpa2l	guanylate binding protein 6	protein-coding	7.0	46.5	29.5	15.5	43.5	12.5
Merged-chr4-98922319-3	chr4	98921803	98922803	+	750.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1507.0	NM_001301414	230484.0	Mm.371692	NM_146144	ENSMUSG00000028560	Usp1	-	ubiquitin specific peptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-70842388-3	chr2	70841883	70842883	+	750.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16903.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29248541-2	chr11	29248041	29249041	+	750.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21A|LTR|ERV1	-1269.0	NM_025740	216618.0	Mm.128663	NM_025740	ENSMUSG00000020462	Cfap36	2300003H10|4931428D14Rik|Ccdc104	cilia and flagella associated protein 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-28316116-5	chr15	28315641	28316641	+	750.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133365, intron 35 of 78)	intron (NM_133365, intron 35 of 78)	112375.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21545122-2	chr9	21544622	21545622	+	750.799988	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_206536, exon 6 of 6)	3' UTR (NM_206536, exon 6 of 6)	-1772.0	NM_021531	59035.0	Mm.178115	NM_021531	ENSMUSG00000032185	Carm1	Prmt4	coactivator-associated arginine methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-68908814-3	chr8	68908260	68909260	+	750.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28205.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	16.5	22.0	19.0	13.5	8.0	13.5
Merged-chr13-102025879-3	chr13	102025328	102026328	+	750.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-257611.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117033954-3	chr10	117033454	117034454	+	750.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11387.0	NM_146242	237560.0	Mm.37320	NM_146242	ENSMUSG00000060187	Lrrc10	D330003I11Rik|Hrlrrp|Serdin1	leucine rich repeat containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86676233-3	chr4	86675789	86676789	+	750.766663	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR34B_MM|LTR|ERVK	-6230.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	5.0	12.0	9.0	0.0	7.5	2.0
Merged-chr17-65785898-2	chr17	65785374	65786374	+	750.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_152099, intron 2 of 20)	RLTR13D2|LTR|ERVK	2519.0	NR_104465	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	40.0	18.5	18.0	19.5	29.0	28.0
Merged-chr19-4087369-2	chr19	4086869	4087869	+	750.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001160253)	TTS (NM_001160253)	3850.0	NM_013878	29866.0	Mm.46268	NM_013878	ENSMUSG00000024857	Cabp2	-	calcium binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146501793-2	chr3	146501293	146502293	+	750.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010318, intron 1 of 2)	intron (NM_010318, intron 1 of 2)	1957.0	NM_010318	14707.0	Mm.140804	NM_010318	ENSMUSG00000068523	Gng5	G(y)5	guanine nucleotide binding protein (G protein), gamma 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125313142-2	chr6	125312642	125313642	+	750.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010736, intron 2 of 9)	intron (NM_010736, intron 2 of 9)	743.0	NM_010736	17000.0	Mm.3122	NM_010736	ENSMUSG00000030339	Ltbr	AI256028|LTbetaR|Ltar|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFRrp|Tnfbr|Tnfrsf3	lymphotoxin B receptor	protein-coding	11.5	43.5	24.0	31.0	51.0	52.5
Merged-chr19-16784181-2	chr19	16783681	16784681	+	750.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD|LINE|L1	-3248.0	NM_173028	271564.0	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84868231-4	chr3	84867731	84868731	+	750.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177773, intron 3 of 13)	intron (NM_001177773, intron 3 of 13)	4086.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	6.0	22.0	13.0	4.0	22.0	12.5
Merged-chr10-79679395-2	chr10	79678895	79679895	+	750.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2800.0	NM_001359818	216150.0	Mm.21981	NM_177613	ENSMUSG00000020307	Cdc34	AI327276|E2-CDC34|UBE2R1	cell division cycle 34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-15171309-3	chr10	15170787	15171787	+	750.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	410998.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101993196-2	chr5	101992697	101993697	+	750.733337	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	76724.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	8.0	29.5	25.5	3.0	16.0	17.5
Merged-chr2-118703070-4	chr2	118702606	118703606	+	750.708313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081971, exon 1 of 1)	exon (NM_001081971, exon 1 of 1)	857.0	NM_001081971	383787.0	Mm.35758	NM_001081971	ENSMUSG00000078137	Ankrd63	Gm1337	ankyrin repeat domain 63	protein-coding	0.0	0.0	2.5	2.5	0.0	1.5
Merged-chr11-69546533-4	chr11	69545998	69546998	+	750.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 1 of 85)	intron (NM_001081330, intron 1 of 85)	2610.0	NM_001081330	327954.0	Mm.247478	NM_177617	ENSMUSG00000005237	Dnah2	2900022L05Rik|4930564A01|D130094J20|D330014H01Rik|Dnahc2|Dnhd3	dynein, axonemal, heavy chain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31106445-2	chr6	31105945	31106945	+	750.6999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-43352.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58595545-3	chr15	58595107	58596107	+	750.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	180139.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95671923-2	chr3	95671423	95672423	+	750.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	13202.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87372182-3	chr3	87371754	87372754	+	750.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-4133.0	NM_001310545	229499.0	Mm.255203	NM_153090	ENSMUSG00000059994	Fcrl1	A230020G22Rik|Bxmas1|Bxmh1|Bxmh1b|Fcrh1|Fcrh1l|Fcrh1s|Ifgp1	Fc receptor-like 1	protein-coding	19.5	23.0	21.5	7.5	11.0	32.0
Merged-chr2-105674578-3	chr2	105674093	105675093	+	750.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001244198, intron 1 of 12)	intron (NM_001244198, intron 1 of 12)	-1151.0	NM_001244200	18508.0	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	0.0	0.0	0.5	2.5	0.0	0.0
Merged-chr4-81743166-3	chr4	81742658	81743658	+	750.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-256145.0	NR_030570	100124446.0		NR_030570	ENSMUSG00000077941	Mir466h	Mirn466h	microRNA 466h	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100963325-1	chr7	100962825	100963825	+	750.666687	f1_balb.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	1041.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	48.5	74.0	78.0	36.5	53.5	68.0
Merged-chr19-11111758-2	chr19	11111258	11112258	+	750.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_027058, intron 3 of 6)	LTR87|LTR|ERVL?	19120.0	NM_027058	69369.0	Mm.391200	NM_027058	ENSMUSG00000024729	1700017D01Rik	-	RIKEN cDNA 1700017D01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4942494-2	chr19	4941994	4942994	+	750.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347422, intron 1 of 5)	intron (NM_001347422, intron 1 of 5)	598.0	NM_172835	240518.0	Mm.277580	NM_172835	ENSMUSG00000024901	Peli3	6030441F14Rik|A930011L17|BC028931	pellino 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139459943-2	chr5	139459443	139460443	+	750.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 1 of 4)	intron (NM_028469, intron 1 of 4)	591.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29170186-4	chr6	29169696	29170696	+	750.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001101443, exon 5 of 5)	exon (NM_001101443, exon 5 of 5)	-5472.0	NM_133925	68272.0	Mm.40802	NM_026650	ENSMUSG00000029701	Rbm28	2810480G15Rik|AI503051	RNA binding motif protein 28	protein-coding	0.0	0.0	4.5	0.0	0.0	4.0
Merged-chr19-42518322-2	chr19	42517844	42518844	+	750.625	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_177464)	promoter-TSS (NM_177464)	-461.0	NM_177464	52013.0	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	18.5	38.5	58.0	0.0	38.5	17.5
Merged-chr10-128669023-2	chr10	128668523	128669523	+	750.625	f1_balb.idr|f1_c57bl6.idr	TTS (NM_173733)	TTS (NM_173733)	4895.0	NM_173733	211389.0	Mm.23352	NM_173733	ENSMUSG00000049858	Suox	SO	sulfite oxidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29043020-4	chr7	29042507	29043507	+	750.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009109, intron 84 of 105)	intron (NM_009109, intron 84 of 105)	40687.0	NR_035489	100316710.0		NR_035489	ENSMUSG00000089219	Mir1963	mir-1963|mmu-mir-1963	microRNA 1963	ncRNA	184.0	188.0	167.5	58.0	181.0	146.0
Merged-chr17-71599709-3	chr17	71599288	71600288	+	750.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1027.0	NR_027952	68789.0	Mm.75202	NR_015549	ENSMUSG00000085492	Trmt61b	1110039F03Rik|623451|Gm6431	tRNA methyltransferase 61B	ncRNA	2.5	21.0	18.5	0.0	1.0	9.5
Merged-chr11-118465158-3	chr11	118464627	118465627	+	750.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-10132.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-89454005-3	chr10	89453494	89454494	+	750.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163504)	TTS (NM_001163504)	-10027.0	NM_001033331	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	7.5	4.5	4.0	1.0	7.5	8.5
Merged-chr2-30969229-3	chr2	30968721	30969721	+	750.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12B|LTR|ERVK	-1303.0	NM_144884	30931.0	Mm.154994	NM_144884	ENSMUSG00000026849	Tor1a	DQ2|Dyt1|torsinA	torsin family 1, member A (torsin A)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111011059-3	chr10	111010557	111011557	+	750.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172554)	promoter-TSS (NM_172554)	-991.0	NM_172554	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	21.5	27.5	20.5	19.5	30.5	21.5
Merged-chr14-19995811-3	chr14	19995325	19996325	+	750.522217	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16|LTR|ERVK	-18576.0	NM_001285909	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102066900-3	chr5	102066288	102067288	+	750.518494	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	3133.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145142572-4	chr6	145142060	145143060	+	750.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008511, intron 3 of 18)	intron (NM_008511, intron 3 of 18)	-2915.0	NM_001361633	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	7.0	11.5	14.0	3.0	15.0	7.0
Merged-chr8-35378829-3	chr8	35378260	35379260	+	750.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177741, intron 1 of 1)	intron (NM_177741, intron 1 of 1)	3019.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	1.0	0.0	2.0	0.0	1.5	0.5
Merged-chr4-132311029-2	chr4	132310529	132311529	+	750.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027925)	TTS (NM_027925)	326.0	NR_028537	100217437.0		NR_028537		Snord99	MBII-420	small nucleolar RNA, C/D box 99	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64593008-2	chr17	64592508	64593508	+	750.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8641.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-31108183-2	chr7	31107683	31108683	+	750.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110252, intron 5 of 13)	intron (NM_001110252, intron 5 of 13)	2814.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125092560-2	chr6	125092060	125093060	+	750.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3421.0	NM_001346610	107932.0	Mm.333388	NM_145979	ENSMUSG00000063870	Chd4	9530019N15Rik|AA617397|BC005710|D6Ertd380e|Mi-2beta|mKIAA4075	chromodomain helicase DNA binding protein 4	protein-coding	5.5	1.5	1.0	5.5	16.5	2.5
Merged-chr15-14018538-2	chr15	14018038	14019038	+	750.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-844863.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr5-72202179-2	chr5	72201679	72202679	+	750.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1150.0	NR_003966	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-33266806-2	chr14	33266306	33267306	+	750.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	49983.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55587135-3	chr13	55586633	55587633	+	750.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-6002.0	NM_026211	67511.0	Mm.45233	NM_026211	ENSMUSG00000058569	Tmed9	2400003B06Rik	transmembrane p24 trafficking protein 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-193153031-2	chr1	193152531	193153531	+	750.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016851)	promoter-TSS (NM_016851)	-81.0	NM_016851	54139.0	Mm.273695	NM_016851	ENSMUSG00000026638	Irf6	AI876454|E230028I05Rik|mirf6	interferon regulatory factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-50295681-2	chr2	50295181	50296181	+	750.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133839, intron 2 of 7)	B3|SINE|B2	1120.0	NM_001348200	109129.0	Mm.29214	NM_133839	ENSMUSG00000026766	Mmadhc	2010311D03Rik|AI314967|CblD	methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77468692-2	chr11	77468192	77469192	+	750.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139129, intron 6 of 8)	intron (NM_139129, intron 6 of 8)	4779.0	NM_139130	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-14068872-2	chr13	14068372	14069372	+	750.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_194262, intron 2 of 23)	intron (NM_194262, intron 2 of 23)	5088.0	NM_198122	94246.0	Mm.439784	NM_194262	ENSMUSG00000039219	Arid4b	BCAA|BRCAA1|RBBP1L1|Rbp1l1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44385460-2	chr10	44384960	44385960	+	750.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25784.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13467184-2	chr9	13466693	13467693	+	750.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	35832.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	48.0	73.5	61.0	57.5	82.5	60.0
Merged-chr2-144294150-2	chr2	144293650	144294650	+	750.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	23246.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-41211218-2	chr1	41210718	41211718	+	750.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29966.0	NR_040475	74897.0	Mm.243822	NR_040475	ENSMUSG00000104072	4930448I06Rik	-	RIKEN cDNA 4930448I06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-78199336-2	chr1	78198836	78199836	+	750.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2200.0	NM_008781	18505.0	Mm.1371	NM_008781	ENSMUSG00000004872	Pax3	Pax-3|Sp|Splchl2|splotch	paired box 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60287946-2	chr10	60287446	60288446	+	750.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146124, intron 1 of 13)	intron (NM_001146124, intron 1 of 13)	3485.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5133239-3	chr18	5132740	5133740	+	750.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32491.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-98081421-2	chr16	98080921	98081921	+	750.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_015491, intron 1 of 4)	intron (NR_015491, intron 1 of 4)	1018.0	NR_015491	320586.0	Mm.442230	NR_015491		A630089N07Rik	-	RIKEN cDNA A630089N07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-97071993-2	chr13	97071493	97072493	+	750.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001100458, intron 1 of 12)	CpG	350.0	NM_001100458	320557.0	Mm.458280	NM_001100458	ENSMUSG00000041817	Fam169a	B230112C05Rik|SLAP75	family with sequence similarity 169, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-51988053-2	chr15	51987553	51988553	+	750.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009009, intron 1 of 13)	intron (NM_009009, intron 1 of 13)	3707.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153399541-2	chr2	153399041	153400041	+	750.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001039939, exon 12 of 12)	exon (NM_001039939, exon 12 of 12)	44938.0	NM_001001986	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-106981606-4	chr4	106981103	106982103	+	750.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355532, intron 1 of 14)	intron (NM_001355532, intron 1 of 14)	58418.0	NM_001355532	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	14.0	10.0	2.5	12.0	4.0	2.0
Merged-chr7-28634278-2	chr7	28633778	28634778	+	750.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3263.0	NM_175319	101744.0	Mm.26022	NM_175319	ENSMUSG00000037469	Acp7	AU017076|C330005M16Rik|Papl	acid phosphatase 7, tartrate resistant	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128963411-2	chr4	128962911	128963911	+	750.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172875)	promoter-TSS (NM_172875)	-956.0	NM_001301841	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122759196-2	chr5	122758696	122759696	+	750.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199676, intron 2 of 16)	B4A|SINE|B4	20214.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-26995750-2	chr10	26995229	26996229	+	750.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008481, intron 57 of 63)	intron (NM_008481, intron 57 of 63)	223217.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.0	1.0	0.0	0.0	3.0	0.0
Merged-chr6-124669106-2	chr6	124668606	124669606	+	750.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_149320, intron 1 of 11)	ID_B1|SINE|B4	6002.0	NM_145130	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-30830991-2	chr3	30830491	30831491	+	750.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-24959.0	NM_001134386	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28737475-2	chr17	28736975	28737975	+	750.474976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168513, intron 9 of 11)	intron (NM_001168513, intron 9 of 11)	-31842.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31025120-3	chr16	31024621	31025621	+	750.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 2 of 3)	intron (NM_198626, intron 2 of 3)	56311.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	27.5	5.5	11.0	3.5	13.0	7.5
Merged-chr16-73098976-3	chr16	73098486	73099486	+	750.416687	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	435837.0	NM_019413	19876.0	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	1.0	8.0	0.0	0.0	0.0	1.0
Merged-chr1-155055978-2	chr1	155055478	155056478	+	750.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	27286.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33873899-2	chr2	33873399	33874399	+	750.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 2 of 9)	MER20|DNA|hAT-Charlie	14047.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53529070-3	chr11	53528553	53529553	+	750.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361969, intron 1 of 9)	intron (NM_001361969, intron 1 of 9)	8865.0	NM_001361969	20362.0	Mm.274399	NM_033144	ENSMUSG00000018398	Sept8	AW046166|Sepl	septin 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-31179598-2	chr9	31179062	31180062	+	750.366699	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357698, intron 1 of 17)	B2_Mm2|SINE|B2	32286.0	NM_001357698	11804.0	Mm.19133	NM_009691	ENSMUSG00000031996	Aplp2	AI790698|APLP-2|CDEBP	amyloid beta (A4) precursor-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29090860-2	chr17	29090315	29091315	+	750.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111099)	promoter-TSS (NM_001111099)	-164.0	NM_001111099	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	2.0	0.0	1.5	5.0	1.5	0.0
Merged-chr9-44419401-2	chr9	44418901	44419901	+	750.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1332.0	NM_201372	382073.0	Mm.259573	NM_201372	ENSMUSG00000043923	Ccdc84	D630044F24Rik|Gm1114	coiled-coil domain containing 84	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr19-29503977-2	chr19	29503477	29504477	+	750.333374	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015567, exon 4 of 4)	non-coding (NR_015567, exon 4 of 4)	18010.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-115831475-2	chr4	115830975	115831975	+	750.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_175308, exon 2 of 4)	exon (NM_175308, exon 2 of 4)	3383.0	NM_175308	100465.0	Mm.35571	NM_175308	ENSMUSG00000028709	Mob3c	AW822253|D130076I06Rik|Mobkl2c	MOB kinase activator 3C	protein-coding	6.5	50.5	7.5	5.0	16.5	12.0
Merged-chr18-57577181-3	chr18	57576681	57577681	+	750.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029290, intron 3 of 6)	MLT1C|LTR|ERVL-MaLR	-24784.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59267480-3	chr4	59266980	59267980	+	750.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105031, intron 3 of 3)	ORR1F|LTR|ERVL-MaLR	7429.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-37440717-3	chr16	37440226	37441226	+	750.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55768.0	NM_172440	207227.0	Mm.80170	NM_172440	ENSMUSG00000022829	Stxbp5l	9430094L02|A830015P08Rik|LLGL4|T2dm1|t2md1|tomosyn-2	syntaxin binding protein 5-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83396399-3	chr7	83395911	83396911	+	750.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-188520.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129515289-3	chr6	129514790	129515790	+	750.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081186, intron 2 of 4)	intron (NM_001081186, intron 2 of 4)	2733.0	NM_001081186	330428.0	Mm.44237	NM_001081186	ENSMUSG00000030160	Tmem52b	D630042F21Rik	transmembrane protein 52B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-109892873-4	chr9	109892353	109893353	+	750.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007658, exon 15 of 15)	3' UTR (NM_007658, exon 15 of 15)	3210.0	NR_106057	102465660.0		NR_106057	ENSMUSG00000098490	Mir7089	Gm27418|mmu-mir-7089	microRNA 7089	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146560617-1	chr3	146560117	146561117	+	750.333313	f0_balb.idr	Intergenic	Intergenic	-36532.0	NM_009474	22262.0	Mm.10865	NM_009474	ENSMUSG00000028186	Uox	AI663847	urate oxidase	protein-coding	0.0	0.5	0.5	0.0	4.5	3.5
Merged-chr11-59297148-3	chr11	59296654	59297654	+	750.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-6403.0	NM_009522	22416.0	Mm.1367	NM_009522	ENSMUSG00000009900	Wnt3a	Wnt-3a|vt	wingless-type MMTV integration site family, member 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180607616-3	chr1	180607123	180608123	+	750.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	20422.0	NR_105869	102466761.0		NR_105869	ENSMUSG00000098926	Mir6904	Gm27426|mmu-mir-6904	microRNA 6904	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58050252-3	chr15	58049723	58050723	+	750.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009572, intron 3 of 3)	intron (NM_009572, intron 3 of 3)	-15929.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-85331825-4	chr15	85331330	85332330	+	750.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4551.0	NM_016843	54138.0	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding	5.5	2.5	6.5	4.5	2.5	7.0
Merged-chr9-105519632-3	chr9	105519121	105520121	+	750.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253831, intron 1 of 26)	intron (NM_001253831, intron 1 of 26)	1636.0	NM_001253831	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	6.5	12.5	5.5	0.5	4.5	1.5
Merged-chr17-23738059-2	chr17	23737559	23738559	+	750.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_023824, intron 2 of 2)	intron (NM_023824, intron 2 of 2)	2271.0	NM_023824	76498.0	Mm.491253	NM_023824	ENSMUSG00000023909	Paqr4	1500004C10Rik	progestin and adipoQ receptor family member IV	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr9-21034771-2	chr9	21034271	21035271	+	750.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_008319, exon 4 of 11)	exon (NM_008319, exon 4 of 11)	-2443.0	NR_035438	100316681.0		NR_035438	ENSMUSG00000084663	Mir1900	Mirn1900|mmu-mir-1900	microRNA 1900	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-111269860-4	chr5	111269357	111270357	+	750.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 13 of 22)	intron (NM_001267622, intron 13 of 22)	-60840.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	0.0	0.0	0.0	2.0	0.0	0.0
Merged-chr7-66311461-3	chr7	66310958	66311958	+	750.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 6 of 33)	intron (NM_146191, intron 6 of 33)	70266.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24175104-4	chr7	24174618	24175618	+	750.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029933)	promoter-TSS (NM_001029933)	96.0	NM_001029933	232966.0	Mm.435485	NM_001029933	ENSMUSG00000068962	Zfp114	Gm1957|Zfp110	zinc finger protein 114	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-144265828-4	chr1	144265325	144266325	+	750.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16721.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122569698-2	chr6	122569198	122570198	+	750.200012	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	15889.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	4.0	4.5	4.0	4.0	4.0	5.0
Merged-chr18-4347798-3	chr18	4347263	4348263	+	750.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 2 of 7)	intron (NM_007746, intron 2 of 7)	5190.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73585415-3	chr12	73584867	73585867	+	750.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008856, exon 1 of 14)	exon (NM_008856, exon 1 of 14)	571.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-68357638-2	chr7	68357138	68358138	+	750.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013811, intron 7 of 8)	intron (NM_001013811, intron 7 of 8)	-59786.0	NR_046208	71244.0	Mm.410787	NR_046208	ENSMUSG00000108924	4933436H12Rik	-	RIKEN cDNA 4933436H12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61921883-2	chr8	61921383	61922383	+	750.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6204.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	8.5	18.0	4.5	0.0	23.0	8.0
Merged-chr6-72148271-2	chr6	72147771	72148771	+	750.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 5 of 6)	RSINE1|SINE|B4	-25074.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106885245-2	chr9	106884739	106885739	+	750.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_175402, exon 1 of 1)	exon (NM_175402, exon 1 of 1)	1761.0	NM_175402	109095.0	Mm.431589	NM_175402	ENSMUSG00000074102	Rbm15b	1810017N16Rik	RNA binding motif protein 15B	protein-coding	0.0	0.0	0.0	0.0	0.0	3.5
Merged-chr17-73940093-2	chr17	73939593	73940593	+	750.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 3 of 35)	intron (NM_011723, intron 3 of 35)	10103.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115191574-2	chr11	115191074	115192074	+	750.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033393, intron 2 of 9)	B4A|SINE|B4	4087.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	146.0	332.0	248.0	64.5	109.0	97.5
Merged-chr12-85539090-2	chr12	85538590	85539590	+	750.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR53_Mm|LTR|ERVK	-60015.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119331524-4	chr4	119330987	119331987	+	750.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001270435, exon 12 of 15)	exon (NM_001270435, exon 12 of 15)	-10964.0	NM_001110130	66101.0	Mm.304080	NM_028677	ENSMUSG00000060288	Ppih	1100001J08Rik|2010111B15Rik|4833408F11Rik|AI464484|CYP-20|CYPH|D4Wsu43e	peptidyl prolyl isomerase H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-74989510-4	chr14	74989002	74990002	+	750.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14416.0	NR_046078	100043169.0	Mm.145900	NR_046078	ENSMUSG00000115019	Gm4278	-	predicted gene 4278	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73215797-3	chr14	73215299	73216299	+	750.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 18 of 26)	intron (NM_009029, intron 18 of 26)	-8948.0	NR_030459	751541.0		NR_030459	ENSMUSG00000076121	Mir687	Mirn687|mir-687|mmu-mir-687	microRNA 687	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106532036-1	chr9	106531536	106532536	+	750.0	f1_c57bl6.idr	Intergenic	Intergenic	17463.0	NM_029300	75470.0	Mm.63799	NM_029300	ENSMUSG00000066382	Iqcf5	1700007L12Rik	IQ motif containing F5	protein-coding	0.0	0.0	4.5	2.0	0.0	2.0
Merged-chr8-117455444-2	chr8	117454944	117455944	+	750.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 18 of 20)	intron (NM_028941, intron 18 of 20)	2421.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29358914-2	chr11	29358414	29359414	+	750.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-15258.0	NM_176841	108686.0	Mm.338284	NM_176841	ENSMUSG00000032740	Ccdc88a	A430106J12Rik|AI848406|Ape|C130096N06Rik|C330012F17Rik|D130005J21Rik|Girdin|Giv|Grdn|Hkrp1	coiled coil domain containing 88A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6450817-2	chr19	6450317	6451317	+	750.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 5 of 22)	intron (NM_001205234, intron 5 of 22)	32079.0	NM_001205234	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32011792-2	chr4	32011309	32012309	+	750.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009316, intron 14 of 16)	Lx8|LINE|L1	47702.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	19.5	0.0	10.5	6.0	4.5	6.0
Merged-chr13-110393972-2	chr13	110393472	110394472	+	750.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1072.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	2.5	24.5	21.0	5.0	32.5	15.5
Merged-chr11-70005713-2	chr11	70005213	70006213	+	750.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007888, exon 5 of 15)	exon (NM_007888, exon 5 of 15)	5087.0	NM_007888	13543.0	Mm.5114	NM_007888	ENSMUSG00000020888	Dvl2	-	dishevelled segment polarity protein 2	protein-coding	2.0	1.5	0.0	0.0	1.5	0.0
Merged-chr2-129295626-2	chr2	129295126	129296126	+	750.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181589, intron 2 of 8)	B4A|SINE|B4	1586.0	NM_181589	70466.0	Mm.45785	NM_181589	ENSMUSG00000048327	Ckap2l	2010016H04Rik|2610318C08Rik|AV070319|radmis|rdm	cytoskeleton associated protein 2-like	protein-coding	0.0	0.0	1.0	1.0	0.5	2.0
Merged-chr12-80213925-2	chr12	80213425	80214425	+	750.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 1 of 20)	intron (NM_134156, intron 1 of 20)	46446.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21796981-2	chr9	21796481	21797481	+	750.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145611, intron 1 of 11)	intron (NM_145611, intron 1 of 11)	1565.0	NM_145611	235041.0	Mm.257371	NM_145611	ENSMUSG00000032194	Kank2	AI504612|Ankrd25|BC010245	KN motif and ankyrin repeat domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63591831-2	chr4	63591331	63592331	+	750.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	8933.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-118407717-2	chr5	118407217	118408217	+	750.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-153002.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95003700-2	chr8	95003200	95004200	+	750.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018882, intron 3 of 13)	intron (NM_018882, intron 3 of 13)	-13992.0	NM_173036	54672.0	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94787840-1	chr8	94787340	94788340	+	750.0	f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	15660.0	NM_009142	20312.0	Mm.103711	NM_009142	ENSMUSG00000031778	Cx3cl1	AB030188|ABCD-3|AI848747|CX3C|Cxc3|D8Bwg0439e|Scyd1	chemokine (C-X3-C motif) ligand 1	protein-coding	0.0	1.0	0.5	0.0	9.0	3.0
Merged-chr14-70581000-1	chr14	70580500	70581500	+	750.0	f1_balb.idr	3' UTR (NM_001360475, exon 3 of 3)	3' UTR (NM_001360475, exon 3 of 3)	2901.0	NM_001360474	213484.0	Mm.34191	NM_153136	ENSMUSG00000045211	Nudt18	BC036718	nudix (nucleoside diphosphate linked moiety X)-type motif 18	protein-coding	4.0	0.5	0.5	2.5	0.0	0.0
Merged-chr3-35123337-2	chr3	35122837	35123837	+	750.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-200686.0	NR_105799	102466155.0		NR_105799	ENSMUSG00000098862	Mir6378	Gm27706|mmu-mir-6378	microRNA 6378	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145025336-1	chr4	145024836	145025836	+	750.0	f0_balb.idr	intron (NM_001276465, intron 65 of 69)	intron (NM_001276465, intron 65 of 69)	132199.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-35948411-1	chr3	35947911	35948911	+	750.0	f0_balb.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	-15445.0	NM_001205361	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-72866001-2	chr1	72865501	72866501	+	750.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010518, intron 1 of 3)	intron (NM_010518, intron 1 of 3)	8864.0	NM_010518	16011.0	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75065312-2	chr8	75064812	75065812	+	750.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136259, intron 13 of 15)	intron (NM_001136259, intron 13 of 15)	-28306.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	3.0	0.0	1.0	1.0	0.0	6.5
Merged-chr2-167978614-3	chr2	167978212	167979212	+	750.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011201, exon 9 of 9)	3' UTR (NM_011201, exon 9 of 9)	31881.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-108842571-2	chr14	108842071	108843071	+	750.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	71668.0	NM_199065	76965.0	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121549898-2	chr3	121549398	121550398	+	750.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17554.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-99191434-1	chr4	99190934	99191934	+	750.0	f1_balb.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-2500.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	13.5	33.0	7.0	19.5	37.0	14.0
Merged-chr5-96982138-2	chr5	96981638	96982638	+	750.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-15551.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	7.5	6.0	7.5	7.5	5.5	6.5
Merged-chr5-5551279-2	chr5	5550779	5551779	+	750.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153116, intron 4 of 9)	L1_Rod|LINE|L1	8262.0	NM_153116	207704.0	Mm.323984	NM_153116	ENSMUSG00000040464	Gtpbp10	4930545J22Rik|BC034507	GTP-binding protein 10 (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9910746-2	chr19	9910246	9911246	+	750.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS_Mus|LTR|ERV1	-11213.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65675947-1	chr18	65675447	65676447	+	750.0	f1_balb.idr	intron (NM_001361052, intron 6 of 8)	intron (NM_001361052, intron 6 of 8)	-22321.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	0.0	0.5	0.5	0.0	2.5	1.0
Merged-chr2-32875269-2	chr2	32874769	32875769	+	750.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146119)	promoter-TSS (NM_146119)	-865.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71526883-3	chr2	71526370	71527370	+	750.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-2575.0	NM_010053	13390.0	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-97633274-2	chr13	97632774	97633774	+	750.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73274.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12037918-2	chr15	12037418	12038418	+	750.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-41911.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8469148-1	chr11	8468648	8469648	+	750.0	f1_balb.idr	intron (NM_001083587, intron 20 of 30)	intron (NM_001083587, intron 20 of 30)	195387.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	7.0	1.0	6.0	10.0	1.5	0.0
Merged-chr2-153414213-1	chr2	153413713	153414713	+	750.0	f1_balb.idr	intron (NM_001001986, intron 7 of 7)	intron (NM_001001986, intron 7 of 7)	30266.0	NM_001001986	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106790921-2	chr11	106790421	106791421	+	750.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166685, intron 2 of 18)	intron (NM_001166685, intron 2 of 18)	1669.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-19511154-2	chr18	19510654	19511654	+	750.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6C|LTR|ERVK	490943.0	NM_007882	13507.0	Mm.89935	NM_007882	ENSMUSG00000059898	Dsc3	5430426I24Rik	desmocollin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-31632102-2	chr18	31631602	31632602	+	750.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2266.0	NM_001357554	269003.0	Mm.194538	NM_172965	ENSMUSG00000024260	Sap130	2610304F09Rik|6720406D06	Sin3A associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-63907912-2	chr7	63907412	63908412	+	750.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-8945.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	28.0	86.5	47.5	32.5	71.5	52.5
Merged-chr16-59475076-1	chr16	59474576	59475576	+	750.0	f1_balb.idr	intron (NM_025910, intron 1 of 9)	intron (NM_025910, intron 1 of 9)	3301.0	NM_025910	67014.0	Mm.289150	NM_025910	ENSMUSG00000022724	Riox2	1810047J07Rik|2410057H13Rik|3830408E23Rik|AI449204|Mina	ribosomal oxygenase 2	protein-coding	0.0	5.5	0.5	0.5	0.0	8.0
Merged-chr13-117615513-2	chr13	117615013	117616013	+	750.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010408, intron 1 of 7)	Lx7|LINE|L1	13193.0	NM_010408	15165.0	Mm.343429	NM_010408	ENSMUSG00000021730	Hcn1	Bcng1|C630013B14Rik|HAC2	hyperpolarization-activated, cyclic nucleotide-gated K+ 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22167895-1	chr8	22167395	22168395	+	750.0	f1_c57bl6.idr	TTS (NM_001004140)	TTS (NM_001004140)	-1460.0	NM_011848	23954.0	Mm.41413	NM_011848	ENSMUSG00000031478	Nek3	-	NIMA (never in mitosis gene a)-related expressed kinase 3	protein-coding	0.0	0.0	0.5	0.5	3.0	0.0
Merged-chr12-32164552-1	chr12	32164052	32165052	+	750.0	f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	43786.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	29.5	73.5	87.0	11.5	18.0	13.5
Merged-chr15-20522669-1	chr15	20522169	20523169	+	750.0	f1_balb.idr	Intergenic	Lx3_Mus|LINE|L1	144081.0	NM_022816	64833.0	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding	0.0	0.0	0.0	0.5	0.0	2.0
Merged-chr15-4727828-1	chr15	4727328	4728328	+	750.0	f0_balb.idr	intron (NM_016704, intron 1 of 15)	intron (NM_016704, intron 1 of 15)	618.0	NM_016704	12274.0	Mm.20247	NM_016704	ENSMUSG00000022181	C6	AW111623	complement component 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54533001-2	chr11	54532501	54533501	+	750.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 1 of 28)	MTEb|LTR|ERVL-MaLR	10156.0	NM_001252496	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94387063-1	chr13	94386563	94387563	+	750.0	f0_balb.idr	intron (NM_009680, intron 1 of 26)	L1MD2|LINE|L1	28103.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-182012576-2	chr2	182012076	182013076	+	750.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTAGGG)n|Simple_repeat|Simple_repeat	21350.0	NM_001205282	672125.0	Mm.489571	NM_001205282	ENSMUSG00000098505	Gm14496	-	predicted gene 14496	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139785838-2	chr5	139785338	139786338	+	750.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	-5698.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	8.5	4.0	1.0	7.0	3.5	4.0
Merged-chr2-29716436-2	chr2	29715936	29716936	+	750.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039086, intron 11 of 25)	intron (NM_001039086, intron 11 of 25)	-45092.0	NM_001177392	433416.0	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	-	predicted gene 13547	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151585842-4	chr1	151585352	151586352	+	749.962524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	14479.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-3807073-4	chr13	3806520	3807520	+	749.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2702.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125292723-3	chr5	125292175	125293175	+	749.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 7 of 10)	intron (NM_001205083, intron 7 of 10)	48419.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	24.0	30.5	49.5	20.0	38.0	39.0
Merged-chr5-5610581-3	chr5	5610089	5611089	+	749.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172447, intron 13 of 22)	intron (NM_172447, intron 13 of 22)	36790.0	NR_033499	667705.0	Mm.376656	NR_033499	ENSMUSG00000073234	Gm8773	EG667705|Gm29287	predicted gene 8773	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45115123-4	chr13	45114637	45115637	+	749.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113041.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	2.5	0.0	0.5	2.5	0.0	0.5
Merged-chr9-45260812-5	chr9	45260323	45261323	+	749.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136903, intron 4 of 5)	MIR|SINE|MIR	5884.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-87812631-4	chr4	87812098	87813098	+	749.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027326, intron 5 of 10)	intron (NM_027326, intron 5 of 10)	-6275.0	NM_029931	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75509053-3	chr11	75508498	75509498	+	749.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138659, intron 41 of 41)	intron (NM_138659, intron 41 of 41)	-1096.0	NM_001029938	280408.0	Mm.41416	NM_001029938	ENSMUSG00000038195	Rilp	AI835553|Gm857	Rab interacting lysosomal protein	protein-coding	1.5	7.0	1.0	2.0	5.5	6.0
Merged-chr10-77900282-2	chr10	77899803	77900803	+	749.875	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145152, exon 2 of 2)	3' UTR (NM_145152, exon 2 of 2)	2233.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101859926-4	chr15	101859429	101860429	+	749.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001003667)	TTS (NM_001003667)	-9143.0	NM_008473	16678.0	Mm.183137	NM_008473	ENSMUSG00000046834	Krt1	Krt-2.1|Krt2-1|Krt86	keratin 1	protein-coding	0.5	5.0	5.5	0.5	5.0	3.5
Merged-chr13-44926477-4	chr13	44925952	44926952	+	749.858337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025772, intron 8 of 9)	Lx7|LINE|L1	75644.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78415631-2	chr17	78415131	78416131	+	749.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360407, intron 1 of 9)	intron (NM_001360407, intron 1 of 9)	2521.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-99186433-4	chr13	99185952	99186952	+	749.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	1629.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	47.0	80.5	79.0	36.5	70.5	48.5
Merged-chr7-89252860-2	chr7	89252360	89253360	+	749.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 4 of 14)	ORR1E|LTR|ERVL-MaLR	85927.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25551237-6	chr2	25550679	25551679	+	749.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4239.0	NM_009422	22030.0	Mm.3399	NM_009422	ENSMUSG00000026942	Traf2	AI325259	TNF receptor-associated factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136919798-2	chr5	136919298	136920298	+	749.833313	f1_balb.idr|f1_c57bl6.idr	intron (NR_015555, intron 1 of 3)	intron (NR_015555, intron 1 of 3)	652.0	NR_015555	66752.0	Mm.135764	NR_015555	ENSMUSG00000097908	4933404O12Rik	AW494809	RIKEN cDNA 4933404O12 gene	ncRNA	8.5	2.5	5.5	7.0	14.5	3.0
Merged-chr4-101284090-3	chr4	101283568	101284568	+	749.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18786.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118696379-3	chr9	118695952	118696952	+	749.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 14 of 27)	intron (NM_133721, intron 14 of 27)	-15240.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83444103-3	chr6	83443625	83444625	+	749.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028382, intron 2 of 2)	intron (NR_028382, intron 2 of 2)	2370.0	NR_028382	320775.0	Mm.434334	NR_028382	ENSMUSG00000051844	B230319C09Rik	-	RIKEN cDNA B230319C09 gene	ncRNA	5.0	14.0	4.5	1.0	1.5	2.5
Merged-chr8-46756021-4	chr8	46755513	46756513	+	749.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	A-rich|Low_complexity|Low_complexity	16268.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119847523-2	chr8	119847023	119848023	+	749.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6944.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114687259-2	chr11	114686759	114687759	+	749.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 2 of 13)	B1_Mus2|SINE|Alu	11791.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40799400-2	chr9	40798922	40799922	+	749.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1851.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	167.5	343.0	175.5	92.0	251.5	122.5
Merged-chr16-20265263-2	chr16	20264763	20265763	+	749.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	-23905.0	NM_198599	208158.0	Mm.326383	NM_198599	ENSMUSG00000041205	Map6d1	A330066I15Rik	MAP6 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41973976-2	chr19	41973478	41974478	+	749.75	f0_balb.idr|f0_c57.idr	intron (NM_028152, intron 1 of 30)	intron (NM_028152, intron 1 of 30)	7158.0	NM_028152	72199.0	Mm.218940	NM_028152	ENSMUSG00000025159	Mms19	2410001K24Rik|2610042O15Rik|AI316855|C79368|C86341|Mms19l	MMS19 (MET18 S. cerevisiae)	protein-coding	18.0	35.0	28.0	18.0	61.5	16.5
Merged-chr7-79877961-3	chr7	79877460	79878460	+	749.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009682, exon 6 of 6)	3' UTR (NM_009682, exon 6 of 6)	-29750.0	NM_008486	16790.0	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-59464833-3	chr1	59464336	59465336	+	749.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17311.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-92250680-3	chr2	92250190	92251190	+	749.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109690, intron 3 of 15)	intron (NM_001109690, intron 3 of 15)	29128.0	NM_001109690	192285.0	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1	PHD finger protein 21A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59269026-4	chr10	59268521	59269521	+	749.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	47099.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62847974-4	chr11	62847476	62848476	+	749.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033669, intron 1 of 12)	intron (NM_001033669, intron 1 of 12)	853.0	NM_001291441	213980.0	Mm.482259	NM_001033669	ENSMUSG00000090173	Fbxw10	Fbw10|HREP|SM25H2|SM2SH2	F-box and WD-40 domain protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98036162-4	chr11	98035691	98036691	+	749.69165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_146028)	TTS (NM_146028)	9267.0	NM_009078	19921.0	Mm.10247	NM_009078	ENSMUSG00000017404	Rpl19	-	ribosomal protein L19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80014418-11	chr15	80013926	80014926	+	749.674255	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011057, exon 1 of 7)	5' UTR (NM_011057, exon 1 of 7)	382.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	5.0	2.0	16.5	24.5	31.5	18.0
Merged-chr4-132546065-3	chr4	132545553	132546553	+	749.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172400, intron 5 of 8)	intron (NM_172400, intron 5 of 8)	10494.0	NM_172400	68598.0	Mm.29685	NM_172400	ENSMUSG00000054405	Dnajc8	1110021D09Rik|2010009J04Rik|AL024084|AU019262|AU044514	DnaJ heat shock protein family (Hsp40) member C8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88344091-3	chr7	88343621	88344621	+	749.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66036.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99816221-2	chr15	99815721	99816721	+	749.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113545, intron 4 of 10)	B3|SINE|B2	3928.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73450296-3	chr14	73449776	73450776	+	749.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59773.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31192605-3	chr16	31192095	31193095	+	749.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030138, intron 1 of 22)	ORR1E-int|LTR|ERVL-MaLR	8643.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-142020152-4	chr4	142019641	142020641	+	749.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131014, intron 1 of 1)	B4A|SINE|B4	2243.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34707869-1	chr17	34707369	34708369	+	749.666687	f1_balb.idr	intron (NM_031176, intron 16 of 32)	RMER15-int|LTR|ERVL	36028.0	NM_009780	12268.0	Mm.477109	NM_009780	ENSMUSG00000073418	C4b	C4|Ss	complement component 4B (Chido blood group)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46131827-4	chr19	46131331	46132331	+	749.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007703)	promoter-TSS (NM_007703)	-68.0	NM_007703	12686.0	Mm.21806	NM_007703	ENSMUSG00000038754	Elovl3	CIN-2|Cig30	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-58952144-3	chr4	58951640	58952640	+	749.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355408, intron 5 of 6)	intron (NM_001355408, intron 5 of 6)	8512.0	NM_001355408	100041581.0	Mm.463942	NM_001099323	ENSMUSG00000038630	Zkscan16	XM_143800|Zfp483	zinc finger with KRAB and SCAN domains 16	protein-coding	2.5	17.0	0.0	0.0	1.5	1.5
Merged-chr2-156530017-3	chr2	156529507	156530507	+	749.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001006664, intron 17 of 21)	intron (NM_001006664, intron 17 of 21)	-17569.0	NM_026661	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	1.5	4.5	3.5	3.5	7.0	0.0
Merged-chr16-90223527-3	chr16	90222961	90223961	+	749.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011434, intron 2 of 4)	intron (NM_011434, intron 2 of 4)	2719.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89308304-4	chr3	89307787	89308787	+	749.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14592.0	NM_010108	13638.0	Mm.331159	NM_010108	ENSMUSG00000028039	Efna3	AW494418|EFL-2|Ehk1-L|Epl3|LERK-3	ephrin A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23747293-5	chr13	23746821	23747821	+	749.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175664)	TTS (NM_175664)	587.0	NM_175664	319178.0	Mm.390567	NM_175664	ENSMUSG00000075031	Hist1h2bb	H2b-143	histone cluster 1, H2bb	protein-coding	46.0	126.0	83.5	52.0	66.5	55.5
Merged-chr13-21160227-4	chr13	21159633	21160633	+	749.583374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17078.0	NM_146534	258527.0	Mm.271440	NM_146534	ENSMUSG00000045474	Olfr1368	MOR256-15	olfactory receptor 1368	protein-coding	0.0	6.5	1.0	0.0	5.0	4.5
Merged-chr11-100358634-2	chr11	100358134	100359134	+	749.583313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2493.0	NM_010404	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0.0	7.5	1.0	0.0	2.0	0.0
Merged-chr17-48300997-4	chr17	48300520	48301520	+	749.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360121, intron 1 of 4)	intron (NM_001360121, intron 1 of 4)	982.0	NM_001360121	328833.0	Mm.329104	NM_001033405	ENSMUSG00000071068	Treml2	AW049306|Gm750|Tlt2	triggering receptor expressed on myeloid cells-like 2	protein-coding	7.5	10.5	6.5	9.0	2.0	3.5
Merged-chr10-44425103-3	chr10	44424612	44425612	+	749.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AmnSINE1|SINE|Deu	33636.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5015211-3	chr19	5014688	5015688	+	749.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-8818.0	NM_007854	13340.0	Mm.4930	NM_007854	ENSMUSG00000024891	Slc29a2	Der12|Ent2|Hnp36	solute carrier family 29 (nucleoside transporters), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120233790-3	chr10	120233295	120234295	+	749.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	6735.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106555875-2	chr11	106555375	106556375	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198292, intron 2 of 11)	intron (NM_198292, intron 2 of 11)	54884.0	NR_030703	100216537.0		NR_030703	ENSMUSG00000065126	Snord104	-	small nucleolar RNA, C/D box 104	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3969270-2	chr5	3968770	3969770	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_194462, intron 8 of 47)	intron (NM_194462, intron 8 of 47)	41084.0	NM_194462	100986.0	Mm.46044	NM_194462	ENSMUSG00000040407	Akap9	5730481H23Rik|AKAP-9|AKAP450|AW545847|C79026|G1-448-15|PRKA9|mKIAA0803|mei2-5|repro12	A kinase (PRKA) anchor protein (yotiao) 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91378203-2	chr16	91377703	91378703	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 1 of 7)	intron (NM_001347258, intron 1 of 7)	5420.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91077853-2	chr16	91077353	91078353	+	749.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR6B_Mm|LTR|ERV1	-8708.0	NM_028905	74387.0	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-15757307-2	chr6	15756807	15757807	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 3 of 4)	Lx|LINE|L1	36646.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-171630363-2	chr2	171629847	171630847	+	749.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	332452.0	NR_040509	75655.0	Mm.396203	NR_040509	ENSMUSG00000086823	1700028P15Rik	-	RIKEN cDNA 1700028P15 gene	ncRNA	11.0	0.0	7.0	1.5	8.5	1.5
Merged-chr10-80782795-2	chr10	80782295	80783295	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199322, intron 12 of 27)	intron (NM_199322, intron 12 of 27)	15831.0	NM_023900	78670.0	Mm.41479	NM_023900	ENSMUSG00000035278	Plekhj1	9530063M10Rik	pleckstrin homology domain containing, family J member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-68874969-2	chr12	68874469	68875469	+	749.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR1b|LTR|Gypsy	284217.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	4.0	0.5	0.0	4.0	0.5	0.0
Merged-chr17-23822400-2	chr17	23821900	23822900	+	749.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_039586)	promoter-TSS (NR_039586)	-891.0	NR_039586	100628593.0		NR_039586	ENSMUSG00000092981	Mir5125	mmu-mir-5125|mu-mir-5125	microRNA 5125	ncRNA	0.0	0.0	3.0	1.0	2.0	0.0
Merged-chr8-11474841-2	chr8	11474341	11475341	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	RSINE1|SINE|B4	-3088.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108224694-2	chr3	108224194	108225194	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008596, intron 2 of 5)	intron (NM_008596, intron 2 of 5)	1905.0	NM_008596	17306.0	Mm.316885	NM_008596	ENSMUSG00000027887	Sypl2	AI552439|Mg29	synaptophysin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-10723334-2	chr18	10722834	10723834	+	749.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-2291.0	NM_144860	225164.0	Mm.21500	NM_144860	ENSMUSG00000024294	Mib1	DIP-1|E430019M12Rik|Mib|mKIAA1323	mindbomb E3 ubiquitin protein ligase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-51844221-1	chr12	51843721	51844721	+	749.5	f0_balb.idr	Intergenic	Intergenic	-14685.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	1.0	7.5	11.5	7.0	0.0	6.0
Merged-chr15-53342975-2	chr15	53342475	53343475	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	3208.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5642401-2	chr19	5641901	5642901	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009045, intron 8 of 10)	B3|SINE|B2	4911.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	2.0	3.5	1.5	9.0	1.5	7.5
Merged-chr7-101033530-1	chr7	101033030	101034030	+	749.5	f0_balb.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-21477.0	NM_001302346	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	0.0	0.0	0.0	3.0	0.0	3.0
Merged-chr13-75825118-1	chr13	75824618	75825618	+	749.5	f0_balb.idr	Intergenic	Intergenic	-14767.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	20.5	17.0	18.5	16.5	25.0	14.0
Merged-chr5-137776242-2	chr5	137775742	137776742	+	749.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2662.0	NM_001356989	69871.0	Mm.276058	NM_027242	ENSMUSG00000029725	Ppp1r35	2010007H12Rik|2010011D20Rik|AL024004	protein phosphatase 1, regulatory subunit 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88125197-2	chr17	88124697	88125697	+	749.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190356)	promoter-TSS (NM_001190356)	-315.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98474840-2	chr7	98474340	98475340	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130693, intron 18 of 18)	intron (NM_001130693, intron 18 of 18)	-19382.0	NM_001113379	434215.0	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79706797-2	chr10	79706297	79707297	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077184, intron 1 of 6)	intron (NM_001077184, intron 1 of 6)	2439.0	NM_009768	12215.0	Mm.726	NM_009768	ENSMUSG00000023175	Bsg	AI115436|AI325119|CD147|EMMPRIN|HT-7	basigin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9186540-2	chr13	9186040	9187040	+	749.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-89985.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71662642-2	chr8	71662194	71663194	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 6 of 41)	intron (NM_001029873, intron 6 of 41)	9063.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr12-85457270-2	chr12	85456770	85457770	+	749.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16620.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118252818-2	chr11	118252318	118253318	+	749.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4226.0	NM_011180	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79781610-2	chr10	79781110	79782110	+	749.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_031380, exon 5 of 5)	3' UTR (NM_031380, exon 5 of 5)	4336.0	NM_031380	83554.0	Mm.251710	NM_031380	ENSMUSG00000020325	Fstl3	E030038F23Rik|Flrg	follistatin-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21990698-2	chr10	21990198	21991198	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161848, intron 1 of 11)	intron (NM_001161848, intron 1 of 11)	-1525.0	NM_001161849	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	2.0	0.0	1.0	0.0	0.0	0.0
Merged-chr16-50527205-2	chr16	50526705	50527705	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040380, intron 1 of 4)	RMER17C|LTR|ERVK	960.0	NR_040380	619312.0	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56701440-2	chr18	56700940	56701940	+	749.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-6373.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69087981-3	chr8	69087469	69088469	+	749.5	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_007509)	promoter-TSS (NM_007509)	-767.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	39.0	98.0	69.0	90.0	196.5	154.5
Merged-chr7-99161100-2	chr7	99160593	99161593	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026384, intron 4 of 7)	intron (NM_026384, intron 4 of 7)	-19949.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	5.0	2.5	1.0	2.0	5.5	5.5
Merged-chr10-80567224-2	chr10	80566724	80567724	+	749.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_078477, exon 2 of 2)	3' UTR (NM_078477, exon 2 of 2)	-5664.0	NM_025852	66932.0	Mm.1116	NM_025852	ENSMUSG00000047417	Rexo1	1700021P10Rik|2610511M11Rik|AW050347|EloA-BP1|Rex1|Tceb3bp1	REX1, RNA exonuclease 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91490938-2	chr16	91490438	91491438	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010508, intron 2 of 10)	intron (NM_010508, intron 2 of 10)	5723.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	4.0	0.0	1.0	0.0	0.0	0.0
Merged-chr17-34916678-2	chr17	34916178	34917178	+	749.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_023557, exon 2 of 21)	exon (NM_023557, exon 2 of 21)	2212.0	NM_023557	70129.0	Mm.183126	NM_023557	ENSMUSG00000007034	Slc44a4	2210409B01Rik|NG22|mTPPT1	solute carrier family 44, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-79502412-2	chr14	79501912	79502912	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 1 of 8)	Lx9|LINE|L1	-13262.0	NM_001286412	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87528593-2	chr6	87528093	87529093	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	4666.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-99237328-2	chr11	99236828	99237828	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172946, intron 3 of 5)	MIR|SINE|MIR	-6311.0	NM_020618	57376.0	Mm.379086	NM_020618	ENSMUSG00000037935	Smarce1	2810417B20Rik|5830412H02Rik|9030408N19Rik|Baf27	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding	0.0	0.0	4.0	0.0	0.0	0.0
Merged-chr6-37420237-2	chr6	37419737	37420737	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	21911.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91796447-2	chr16	91795947	91796947	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 5 of 15)	ORR1B1|LTR|ERVL-MaLR	67076.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69006517-3	chr3	69006016	69007016	+	749.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356976, intron 2 of 23)	intron (NM_001356976, intron 2 of 23)	1778.0	NM_133786	70099.0	Mm.206841	NM_133786	ENSMUSG00000034349	Smc4	2500002A22Rik|C79747|SMC-4|Smc4l1	structural maintenance of chromosomes 4	protein-coding	18.0	27.5	9.0	15.0	14.0	28.5
Merged-chr7-74679207-3	chr7	74678710	74679710	+	749.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124430.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	11.5	23.0	23.0	5.0	0.5	8.0
Merged-chr3-88631159-4	chr3	88630671	88631671	+	749.479187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 2 of 21)	intron (NM_001198913, intron 2 of 21)	9777.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0.0	0.0	2.5	4.5	2.5	2.0
Merged-chr2-128573362-3	chr2	128572866	128573866	+	749.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18975.0	NM_001310641	241634.0	Mm.297682	NM_001310641	ENSMUSG00000074812	Spdye4c	Gm355|SpeedyB3|SpyB3	speedy/RINGO cell cycle regulator family, member E4C	protein-coding	2.5	0.0	5.0	0.5	0.0	0.0
Merged-chr15-74679246-3	chr15	74678709	74679709	+	749.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6639.0	NM_018790	11838.0	Mm.491310	NM_018790	ENSMUSG00000022602	Arc	Arc3.1|C86064|arg3.1|mArc	activity regulated cytoskeletal-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-22008521-3	chr10	22008001	22009001	+	749.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13835.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-25727007-3	chr18	25726495	25727495	+	749.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362322, intron 1 of 12)	intron (NM_001362322, intron 1 of 12)	26988.0	NM_001146295	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87257687-3	chr17	87257188	87258188	+	749.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176808, intron 3 of 4)	intron (NM_176808, intron 3 of 4)	8259.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	0.0	5.5	3.0	1.0	1.5	5.5
Merged-chr13-73693506-2	chr13	73693006	73694006	+	749.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359603)	promoter-TSS (NM_001359603)	-870.0	NM_001359603	74338.0	Mm.271635	NM_028878	ENSMUSG00000021565	Slc6a19	4632401C08Rik|B<0>AT1	solute carrier family 6 (neurotransmitter transporter), member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94410078-3	chr11	94409575	94410575	+	749.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009783, intron 35 of 35)	intron (NM_009783, intron 35 of 35)	-17099.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134915687-2	chr4	134915187	134916187	+	749.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027935)	promoter-TSS (NM_027935)	-771.0	NM_027935	71817.0	Mm.88349	NM_027935	ENSMUSG00000028822	Tmem50a	3200001F09Rik|CAM|Smp1	transmembrane protein 50A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23744818-2	chr17	23744318	23745318	+	749.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028416, intron 2 of 9)	intron (NM_028416, intron 2 of 9)	1011.0	NM_028416	73016.0	Mm.221319	NM_028416	ENSMUSG00000040680	Kremen2	2900054E04Rik|Krm2	kringle containing transmembrane protein 2	protein-coding	1.0	0.0	1.0	0.0	6.0	4.5
Merged-chr19-29501633-3	chr19	29501161	29502161	+	749.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20326.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116477706-3	chr7	116477226	116478226	+	749.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26643.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-44127694-3	chr5	44127178	44128178	+	749.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25942.0	NM_001163577	19126.0	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	14.5	6.5	0.0	0.0	13.0	14.0
Merged-chr1-180616946-2	chr1	180616446	180617446	+	749.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24204.0	NM_001103182	72568.0	Mm.275044	NM_175186	ENSMUSG00000058729	Lin9	2700022J23Rik|Bara|Lin-9|TGS|TGS1|mLin-9	lin-9 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120851175-3	chr4	120850677	120851677	+	749.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3622.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	2.5	0.0	0.0	1.0	0.0	1.0
Merged-chr9-47435406-3	chr9	47434918	47435918	+	749.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94752.0	NM_001310841	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	2.5	4.5	5.5	1.0	3.5	2.5
Merged-chr12-113217487-3	chr12	113216969	113217969	+	749.311096	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31566.0	NM_153776	69195.0	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	7.5	5.0	1.0	1.0	0.5	1.5
Merged-chr4-5688225-3	chr4	5687699	5688699	+	749.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173426, intron 1 of 2)	intron (NM_173426, intron 1 of 2)	-36113.0	NM_001355716	242297.0	Mm.331470	NM_173426	ENSMUSG00000049119	Fam110b	1700012H17Rik|5031405P22|AW049855	family with sequence similarity 110, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35733875-3	chr2	35733362	35734362	+	749.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37130.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35232853-3	chr17	35232310	35233310	+	749.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010909, intron 2 of 3)	intron (NM_010909, intron 2 of 3)	-2200.0	NM_001347351	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	44.5	161.0	56.0	40.0	108.5	55.5
Merged-chr11-69834294-3	chr11	69833766	69834766	+	749.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198862, exon 1 of 7)	exon (NM_198862, exon 1 of 7)	583.0	NM_198862	216856.0	Mm.151293	NM_198862	ENSMUSG00000051790	Nlgn2	NL2|NLG2	neuroligin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84599632-2	chr2	84599094	84600094	+	749.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49886.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	11.5	1.0	2.5	4.0	13.5	3.5
Merged-chr11-68656600-3	chr11	68656113	68657113	+	749.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35302.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122601824-3	chr14	122601333	122602333	+	749.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 6 of 24)	intron (NR_153443, intron 6 of 24)	67505.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8609346-3	chr11	8608868	8609868	+	749.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	55167.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132113568-3	chr4	132113062	132114062	+	749.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013622, exon 3 of 3)	exon (NM_013622, exon 3 of 3)	30924.0	NM_013622	18386.0	Mm.5243	NM_013622	ENSMUSG00000050511	Oprd1	DOR|DOR-1|Nbor|mDOR	opioid receptor, delta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32646177-4	chr19	32645672	32646672	+	749.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360403, intron 7 of 11)	intron (NM_001360403, intron 7 of 11)	26167.0	NM_011864	23972.0	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94036514-2	chr8	94036014	94037014	+	749.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177767)	promoter-TSS (NM_177767)	525.0	NM_026623	68219.0	Mm.354445	NM_026623	ENSMUSG00000031754	Nudt21	25kDa|3110048P04Rik|5730530J16Rik|AU014860|AW549947|Cpsf5	nudix (nucleoside diphosphate linked moiety X)-type motif 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116096907-3	chr11	116096413	116097413	+	749.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-9918.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155025970-3	chr1	155025472	155026472	+	749.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57292.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120670454-5	chr7	120670020	120671020	+	749.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040137)	promoter-TSS (NM_001040137)	-177.0	NM_001040136	67983.0	Mm.394441	NM_001040136	ENSMUSG00000030887	Pdzd9	4930408O21Rik	PDZ domain containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59541742-6	chr9	59541358	59542358	+	749.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	2318.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116824747-4	chr4	116824226	116825226	+	749.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3218.0	NM_146256	242642.0	Mm.279897	NM_146256	ENSMUSG00000043155	Hpdl	A830048M07Rik|BC034099|Gloxd1	4-hydroxyphenylpyruvate dioxygenase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128544644-2	chr10	128544144	128545144	+	749.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_134003, exon 3 of 3)	exon (NM_134003, exon 3 of 3)	3100.0	NM_134003	103284.0	Mm.68289	NM_134003	ENSMUSG00000039810	Zc3h10	AI790326	zinc finger CCCH type containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69791263-3	chr12	69790761	69791761	+	749.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183294)	promoter-TSS (NM_183294)	-554.0	NM_183294	71091.0	Mm.132325	NM_183294	ENSMUSG00000020990	Cdkl1	4933411O17Rik	cyclin-dependent kinase-like 1 (CDC2-related kinase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-151997389-2	chr4	151996889	151997889	+	749.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1210.0	NM_172705	230936.0	Mm.25582	NM_172705	ENSMUSG00000047777	Phf13	BC029632|Phf5|SPOC1	PHD finger protein 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113864963-1	chr6	113864463	113865463	+	749.0	f0_balb.idr	intron (NM_009723, intron 3 of 21)	intron (NM_009723, intron 3 of 21)	26576.0	NM_001036684	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23843533-1	chr17	23843033	23844033	+	749.0	f1_c57bl6.idr	exon (NM_027644, exon 4 of 7)	exon (NM_027644, exon 4 of 7)	623.0	NM_027644	71003.0	Mm.328839	NM_027644	ENSMUSG00000024114	Prss41	4931440B09Rik|Tessp-1|Tessp1	protease, serine 41	protein-coding	6.5	0.0	5.0	9.0	1.0	2.5
Merged-chr4-147102301-1	chr4	147101801	147102801	+	749.0	f1_balb.idr	Intergenic	CpG	-33865.0	NR_045446	71270.0	Mm.460830	NR_045446	ENSMUSG00000093617	4933438K21Rik	-	RIKEN cDNA 4933438K21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150210547-1	chr4	150210047	150211047	+	749.0	f0_balb.idr	Intergenic	Intergenic	-9412.0	NM_009802	12353.0	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	5.0	3.5	0.5	0.0	5.0	1.0
Merged-chr9-90111622-2	chr9	90111122	90112122	+	749.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039147, intron 1 of 12)	B1_Mur2|SINE|Alu	3198.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39523065-2	chr6	39522565	39523565	+	749.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172477, exon 2 of 19)	exon (NM_172477, exon 2 of 19)	34769.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90167846-2	chr16	90167346	90168346	+	749.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25609.0	NR_033476	100038709.0	Mm.484070	NR_033476		Gm10789	-	predicted gene 10789	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16175824-2	chr7	16175324	16176324	+	749.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277988, intron 1 of 12)	intron (NM_001277988, intron 1 of 12)	429.0	NR_102730	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	0.0	2.0	2.0	0.5	4.0	0.5
Merged-chr2-146386408-1	chr2	146385908	146386908	+	749.0	f0_balb.idr	intron (NM_001033348, intron 24 of 40)	intron (NM_001033348, intron 24 of 40)	125596.0	NM_001033348	241694.0	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding	5.5	1.0	0.0	4.0	5.0	16.5
Merged-chr7-108935413-2	chr7	108934913	108935913	+	749.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025344, intron 1 of 7)	intron (NM_025344, intron 1 of 7)	998.0	NM_025344	66085.0	Mm.182962	NM_025344	ENSMUSG00000031029	Eif3f	0610037M02Rik|AA409853|Eif3s5	eukaryotic translation initiation factor 3, subunit F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61514623-3	chr9	61514125	61515125	+	749.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	142259.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-124657091-1	chr4	124656591	124657591	+	749.0	f0_balb.idr	promoter-TSS (NM_011141)	promoter-TSS (NM_011141)	-555.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr17-56819715-2	chr17	56819215	56820215	+	749.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009056, intron 1 of 16)	intron (NM_009056, intron 1 of 16)	11293.0	NM_009056	19725.0	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-131160599-2	chr3	131160099	131161099	+	749.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276403, intron 3 of 11)	intron (NM_001276403, intron 3 of 11)	47808.0	NM_001276403	16842.0	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-89143758-2	chr4	89143258	89144258	+	749.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024433, intron 1 of 7)	intron (NM_024433, intron 1 of 7)	6388.0	NM_024433	66902.0	Mm.28500	NM_024433	ENSMUSG00000062937	Mtap	1300019I21Rik|MSAP	methylthioadenosine phosphorylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-89825099-2	chr18	89824599	89825599	+	749.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55963.0	NM_001039173	623279.0	Mm.447164	NM_001039173	ENSMUSG00000073514	Dok6	Dok-6	docking protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46596419-2	chr18	46595919	46596919	+	749.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025698, intron 1 of 2)	intron (NM_025698, intron 1 of 2)	1116.0	NM_025698	66676.0	Mm.296043	NM_025698	ENSMUSG00000033184	Tmed7	3930401E15Rik|5830493P14Rik|AU044611|AW545765|TRAM	transmembrane p24 trafficking protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-72563663-2	chr14	72563163	72564163	+	749.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 15 of 25)	intron (NM_207636, intron 15 of 25)	146340.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95637271-1	chr4	95636771	95637771	+	749.0	f0_balb.idr	intron (NM_029347, intron 5 of 10)	intron (NM_029347, intron 5 of 10)	57850.0	NM_029347	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0.5	2.5	0.0	0.0	4.0	0.0
Merged-chr5-108433035-2	chr5	108432535	108433535	+	749.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007507)	TTS (NM_007507)	1364.0	NR_154996	11958.0	Mm.136093	NM_007507	ENSMUSG00000050856	Atp5k	2610008D24Rik|Atp5i|Lfm1	ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-28726409-2	chr19	28725909	28726909	+	749.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46332.0	NM_175459	226075.0	Mm.223508	NM_175459	ENSMUSG00000052942	Glis3	4833409N03Rik|E330013K21Rik	GLIS family zinc finger 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-33238380-2	chr4	33237880	33238880	+	749.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	10407.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr11-75631367-2	chr11	75630867	75631867	+	749.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008916, intron 1 of 11)	intron (NM_008916, intron 1 of 11)	347.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-102079297-2	chr10	102078797	102079797	+	749.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205098, intron 3 of 7)	intron (NM_001205098, intron 3 of 7)	-79561.0	NM_001162368	67569.0	Mm.25252	NM_026243	ENSMUSG00000019888	Mgat4c	9130411I17Rik|GntIVh	MGAT4 family, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-57430084-1	chr8	57429584	57430584	+	749.0	f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-25839.0	NM_009136	20284.0	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	0.0	0.0	0.0	3.5	3.0	4.0
Merged-chr10-17686768-2	chr10	17686268	17687268	+	749.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-36460.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-69248796-2	chr10	69248296	69249296	+	749.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001252636, exon 3 of 11)	exon (NM_001252636, exon 3 of 11)	35602.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-119089559-2	chr12	119089059	119090059	+	749.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123138.0	NM_029961	77706.0	Mm.261496	NM_029961	ENSMUSG00000072791	Abcb5	9230106F14Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-135183225-1	chr6	135182725	135183725	+	749.0	f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-5255.0	NR_040296	100502888.0	Mm.437844	NR_040296	ENSMUSG00000108239	Gm19434	-	predicted gene, 19434	ncRNA	12.0	9.5	15.0	0.0	15.0	4.0
Merged-chr18-5143422-2	chr18	5142922	5143922	+	749.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	22309.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91874356-2	chr16	91873856	91874856	+	749.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	57274.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35467312-1	chr8	35466812	35467812	+	749.0	f1_c57bl6.idr	3' UTR (NM_026067, exon 7 of 7)	3' UTR (NM_026067, exon 7 of 7)	28221.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	17.0	26.5	17.0	40.5	143.0	100.5
Merged-chr11-98837373-2	chr11	98836873	98837873	+	749.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001080925, exon 1 of 15)	exon (NM_001080925, exon 1 of 15)	588.0	NM_001080925	268480.0	Mm.340766	NM_001080925	ENSMUSG00000038020	Rapgefl1	B230105J10	Rap guanine nucleotide exchange factor (GEF)-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-87107765-3	chr10	87107266	87108266	+	749.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029685, intron 2 of 5)	intron (NM_029685, intron 2 of 5)	49720.0	NM_029685	76640.0	Mm.78423	NM_029685	ENSMUSG00000047129	1700113H08Rik	-	RIKEN cDNA 1700113H08 gene	protein-coding	3.5	11.0	1.0	12.0	3.5	5.5
Merged-chr8-94429429-2	chr8	94428929	94429929	+	749.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5674.0	NR_015514	320377.0	Mm.486022	NR_015514		9330175E14Rik	A630085K21	RIKEN cDNA 9330175E14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94161888-1	chr13	94161388	94162388	+	749.0	f0_balb.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	104092.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167501373-2	chr2	167500873	167501873	+	749.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030743, intron 2 of 7)	intron (NM_030743, intron 2 of 7)	-2070.0	NR_153838	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101694130-3	chr13	101693701	101694701	+	749.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 7 of 15)	intron (NM_001077495, intron 7 of 15)	-1571.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	1.5	1.5	0.0	1.0	0.0	0.0
Merged-chr14-13994609-2	chr14	13994119	13995119	+	749.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-17872.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	7.0	0.0	1.0	0.0	2.5	2.0
Merged-chr16-97540416-3	chr16	97539913	97540913	+	749.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013606, intron 2 of 13)	intron (NM_013606, intron 2 of 13)	4330.0	NM_013606	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57762715-2	chr6	57762215	57763215	+	749.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 3 of 4)	intron (NM_146168, intron 3 of 4)	60260.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-38064258-2	chr1	38063758	38064758	+	749.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019570, intron 12 of 22)	intron (NM_019570, intron 12 of 22)	65408.0	NM_001359287	56210.0	Mm.389103	NM_019570	ENSMUSG00000026082	Rev1	1110027I23Rik|AU022044|Rev1l	REV1, DNA directed polymerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155418134-2	chr1	155417634	155418634	+	749.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011273)	promoter-TSS (NM_011273)	-690.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121330912-2	chr10	121330412	121331412	+	749.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361015, intron 2 of 12)	intron (NM_001361015, intron 2 of 12)	-19516.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62821994-4	chr11	62821515	62822515	+	748.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053169, intron 1 of 5)	intron (NM_053169, intron 1 of 5)	1762.0	NM_053169	94092.0	Mm.117087	NM_053169	ENSMUSG00000047821	Trim16	9130006M08Rik|AI482483|EBBP	tripartite motif-containing 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-116913729-4	chr2	116913232	116914232	+	748.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040335)	TTS (NR_040335)	13580.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76913998-3	chr14	76913472	76914472	+	748.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122645.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	2.0	0.0	2.0	10.0	3.0	5.0
Merged-chr5-72831171-3	chr5	72830666	72831666	+	748.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 1 of 17)	HAL1|LINE|L1	37282.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5942681-5	chr2	5942150	5943150	+	748.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081131, exon 1 of 17)	exon (NM_001081131, exon 1 of 17)	142.0	NM_001081131	209692.0	Mm.222517	NM_001081131	ENSMUSG00000025815	Dhtkd1	C330018I04Rik	dehydrogenase E1 and transketolase domain containing 1	protein-coding	6.0	8.0	9.0	6.5	17.0	7.5
Merged-chr15-7088941-3	chr15	7088422	7089422	+	748.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40650.0	NM_001113386	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153048333-3	chr2	153047839	153048839	+	748.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001011732, intron 1 of 2)	L2b|LINE|L2	16487.0	NM_001011732	228787.0	Mm.376111	NM_001011732	ENSMUSG00000042631	Xkr7	AY534253	X-linked Kx blood group related 7	protein-coding	0.0	2.0	0.0	0.0	0.0	1.0
Merged-chr8-71669632-2	chr8	71669086	71670086	+	748.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 1 of 41)	RSINE1|SINE|B4	2171.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	7.5	3.5	2.5	1.0	0.0	0.0
Merged-chr1-89463295-3	chr1	89462811	89463811	+	748.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	8500.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-127251928-4	chr6	127251427	127252427	+	748.837524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56040.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90433992-2	chr2	90433492	90434492	+	748.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008982, exon 24 of 24)	3' UTR (NM_008982, exon 24 of 24)	33352.0	NM_146263	258330.0	Mm.330392	NM_146263	ENSMUSG00000082980	Olfr1274-ps	GA_x5J8B7W2BV0-3116-4045|MOR228-4|MOR228-5|Olfr1274	olfactory receptor 1274, pseudogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-65469900-2	chr16	65469420	65470420	+	748.833374	f0_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-50709.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	0.0	18.5	6.5	9.0	3.5	2.0
Merged-chr1-87850751-2	chr1	87850251	87851251	+	748.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-2536.0	NM_177646	227333.0	Mm.277217	NM_177646	ENSMUSG00000070738	Dgkd	AI841987|D330025K09|DGKdelta|dgkd-2	diacylglycerol kinase, delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-3943670-4	chr10	3943165	3944165	+	748.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033253, intron 10 of 15)	intron (NM_001033253, intron 10 of 15)	-29410.0	NM_001170786	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124724949-2	chr6	124724449	124725449	+	748.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077705, intron 11 of 15)	intron (NM_001077705, intron 11 of 15)	-6559.0	NR_029792	723944.0		NR_029792	ENSMUSG00000065462	Mir200c	Mirn200c|mir-200c	microRNA 200c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-82234858-3	chr12	82234387	82235387	+	748.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 2 of 23)	MLTR14|LTR|ERV1	64871.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4125377-2	chr19	4124877	4125877	+	748.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025889)	promoter-TSS (NM_025889)	481.0	NM_016666	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125198607-3	chr8	125198189	125199189	+	748.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 9 of 12)	intron (NM_174854, intron 9 of 12)	144494.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	14.0	2.5	10.0	43.5	59.5	69.0
Merged-chr13-51424888-4	chr13	51424393	51425393	+	748.820801	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16275.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19301471-6	chr3	19300953	19301953	+	748.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122759, intron 1 of 12)	intron (NM_001122759, intron 1 of 12)	9869.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49278702-4	chr16	49278205	49279205	+	748.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	221219.0	NM_001166210	667772.0	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98916412-6	chr10	98915879	98916879	+	748.777771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	1227.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95229626-3	chr10	95229127	95230127	+	748.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	-83802.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-48813340-3	chr11	48812864	48813864	+	748.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145377, intron 1 of 5)	intron (NM_145377, intron 1 of 5)	4027.0	NM_145377	211007.0	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44867264-2	chr7	44866764	44867764	+	748.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_133949, exon 3 of 12)	exon (NM_133949, exon 3 of 12)	2524.0	NM_133949	84113.0	Mm.42855	NM_133949	ENSMUSG00000038502	Ptov1	1110030G05Rik|AU041779|Gcap3	prostate tumor over expressed gene 1	protein-coding	3.5	4.0	3.5	2.0	1.0	1.0
Merged-chr6-91691747-2	chr6	91691247	91692247	+	748.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 1 of 14)	intron (NM_009320, intron 1 of 14)	7680.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76223342-2	chr16	76222842	76223842	+	748.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100729.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111055567-2	chr9	111055067	111056067	+	748.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001302376, exon 3 of 3)	exon (NM_001302376, exon 3 of 3)	1677.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	3.5	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32300061-2	chr11	32299561	32300561	+	748.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175000)	promoter-TSS (NM_175000)	-8.0	NM_175000	216635.0	Mm.338482	NM_175000	ENSMUSG00000020295	Hbq1a	A230090E05Rik|Gm876|Hbq1|Hbqt2	hemoglobin, theta 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19143259-2	chr10	19142759	19143759	+	748.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_038021, intron 1 of 3)	intron (NR_038021, intron 1 of 3)	1510.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28894550-4	chr17	28894051	28895051	+	748.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERVK10C-int|LTR|ERVK	-10714.0	NR_045457	74179.0	Mm.248931	NR_045457	ENSMUSG00000085333	1700030A11Rik	-	RIKEN cDNA 1700030A11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-32160826-2	chr14	32160326	32161326	+	748.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033988, intron 1 of 9)	intron (NM_001033988, intron 1 of 9)	939.0	NM_001033988	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57029907-4	chr17	57029474	57030474	+	748.71875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010613, intron 1 of 17)	intron (NM_010613, intron 1 of 17)	1533.0	NM_010613	16549.0	Mm.34296	NM_010613	ENSMUSG00000007670	Khsrp	6330409F21Rik|Fbp2|Fubp2|Ksrp	KH-type splicing regulatory protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132805041-3	chr7	132804546	132805546	+	748.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	8150.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99234642-3	chr15	99234199	99235199	+	748.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010601, intron 10 of 14)	intron (NM_010601, intron 10 of 14)	9723.0	NM_010601	16512.0	Mm.374793	NM_010601	ENSMUSG00000037579	Kcnh3	AU019351|C030044P22Rik|Elk2|Kv12.2|Melk2	potassium voltage-gated channel, subfamily H (eag-related), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23898407-3	chr18	23897908	23898908	+	748.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56280.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-59322935-3	chr7	59322421	59323421	+	748.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_146211, intron 166 of 171)	ORR1F|LTR|ERVL-MaLR	24503.0	NR_146600	102642160.0		NR_146600		Gm22496	-	predicted gene, 22496	snoRNA	3.0	2.0	0.0	3.0	2.0	0.0
Merged-chr17-35267686-3	chr17	35267205	35268205	+	748.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010380)	TTS (NM_010380)	4582.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46459477-3	chr19	46458955	46459955	+	748.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 8 of 11)	intron (NM_001025391, intron 8 of 11)	-42193.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58510707-2	chr16	58510207	58511207	+	748.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 1 of 10)	RLTR20A4|LTR|ERVK	12719.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118746254-5	chr2	118745794	118746794	+	748.659973	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001301269, exon 1 of 1)	exon (NM_001301269, exon 1 of 1)	536.0	NM_001301269	100043272.0	Mm.398072	NM_001301269	ENSMUSG00000074918	Inafm2	5430417L22Rik	InaF motif containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7837949-2	chr10	7837449	7838449	+	748.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_172785, intron 1 of 5)	intron (NM_172785, intron 1 of 5)	1568.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	0.0	7.0	0.5	0.5	0.0	0.5
Merged-chr12-3778401-3	chr12	3777918	3778918	+	748.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027870, intron 18 of 19)	intron (NR_027870, intron 18 of 19)	-28562.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-127837016-3	chr8	127836539	127837539	+	748.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	441186.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	11.0	2.5	4.0	0.5	0.0	1.0
Merged-chr14-105895232-6	chr14	105894702	105895702	+	748.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011897, intron 1 of 1)	CpG	1617.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124232041-6	chr8	124231479	124232479	+	748.561096	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139272, intron 1 of 15)	CpG	585.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	10.5	67.5	22.0	19.5	27.0	16.5
Merged-chr3-127633434-4	chr3	127632892	127633892	+	748.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009718, exon 1 of 2)	5' UTR (NM_009718, exon 1 of 2)	256.0	NM_009718	11924.0	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding	1.0	0.0	2.5	1.0	1.0	0.0
Merged-chr11-102774106-4	chr11	102773619	102774619	+	748.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009613, intron 14 of 26)	CpG	12684.0	NM_001110778	11488.0	Mm.89854	NM_009613	ENSMUSG00000020926	Adam11	AW060611|Mdc	a disintegrin and metallopeptidase domain 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-45473040-2	chr5	45472540	45473540	+	748.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19289.0	NM_001163317	624224.0	Mm.475609	NM_001163317	ENSMUSG00000049530	Clrn2	EG624224	clarin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82921124-2	chr18	82920624	82921624	+	748.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033307)	promoter-TSS (NR_033307)	-564.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81575846-2	chr10	81575346	81576346	+	748.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001252401, exon 2 of 20)	exon (NM_001252401, exon 2 of 20)	559.0	NM_001252401	21886.0	Mm.38608	NM_019725	ENSMUSG00000034771	Tle2	Grg2|mKIAA4188	transducin-like enhancer of split 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164827531-2	chr2	164827031	164828031	+	748.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028028)	TTS (NM_028028)	1003.0	NM_029370	75642.0	Mm.159541	NM_029370	ENSMUSG00000017767	Spata25	1700020C07Rik|Tsg23	spermatogenesis associated 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-13525431-2	chr13	13524931	13525931	+	748.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64978.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13530731-2	chr16	13530231	13531231	+	748.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-10312.0	NR_037997	70100.0	Mm.158330	NR_037997	ENSMUSG00000099411	2310015D24Rik	-	RIKEN cDNA 2310015D24 gene	ncRNA	0.0	1.5	1.0	0.0	6.5	0.0
Merged-chr5-64508764-2	chr5	64508264	64509264	+	748.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31756.0	NR_045413	77382.0	Mm.366742	NR_045411	ENSMUSG00000105352	C030018K13Rik	-	RIKEN cDNA C030018K13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170902717-2	chr1	170902217	170903217	+	748.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_B|LTR|ERVK	10224.0	NM_001029984	435653.0	Mm.337931	NM_001029984	ENSMUSG00000070524	Fcrlb	FREB-2|FREB2|FcRL2|Fcrlm2|Fcry|mFCRL2	Fc receptor-like B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44318003-2	chr19	44317503	44318503	+	748.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25B|LTR|ERVK	14832.0	NR_039574	100628619.0		NR_039574	ENSMUSG00000093315	Mir5114	mmu-mir-5114|mu-mir-5114	microRNA 5114	ncRNA	0.0	9.5	0.0	0.0	0.0	1.0
Merged-chr10-10477202-2	chr10	10476702	10477702	+	748.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4888.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-27262571-2	chr8	27262071	27263071	+	748.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007918, intron 1 of 2)	intron (NM_007918, intron 1 of 2)	2244.0	NM_007918	13685.0	Mm.6700	NM_007918	ENSMUSG00000031490	Eif4ebp1	4e-bp1|AA959816|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-87885823-2	chr14	87885323	87886323	+	748.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	469240.0	NM_001253755	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	0.0	4.5	3.0	11.0	2.5	0.0
Merged-chr18-20695766-2	chr18	20695266	20696266	+	748.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 5 of 8)	intron (NM_019737, intron 5 of 8)	-30506.0	NR_155534	102633478.0		NR_155534	ENSMUSG00000085595	Gm16090	-	predicted gene 16090	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88296282-2	chr7	88295782	88296782	+	748.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009982, intron 2 of 6)	intron (NM_009982, intron 2 of 6)	18197.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	5.5	16.0	5.0	8.0	7.0	5.5
Merged-chr10-128138053-2	chr10	128137553	128138553	+	748.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039080, intron 7 of 13)	intron (NM_001039080, intron 7 of 13)	38515.0	NM_019711	56516.0	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-13799058-2	chr6	13798558	13799558	+	748.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40884.0	NM_001330666	64450.0	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63594452-2	chr4	63593952	63594952	+	748.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6312.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122989177-3	chr8	122988673	122989673	+	748.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	53111.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	1.5	4.5	1.0	3.0	4.5	1.5
Merged-chr19-4212565-2	chr19	4212065	4213065	+	748.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1673.0	NR_132308	105948585.0	Mm.32518	NR_132308		Gm45928	Clcf1-pold4	predicted gene, 45928	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24591309-2	chr10	24590809	24591809	+	748.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4133.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	2.0	0.0	0.0	5.5	0.0	0.0
Merged-chr7-118447991-2	chr7	118447491	118448491	+	748.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001362179, exon 1 of 8)	5' UTR (NM_001362179, exon 1 of 8)	231.0	NM_001362179	110058.0	Mm.156558	NM_138649	ENSMUSG00000058420	Syt17	Bk|sytXVII	synaptotagmin XVII	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26944718-2	chr17	26944218	26945218	+	748.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001281491, exon 2 of 19)	exon (NM_001281491, exon 2 of 19)	3266.0	NM_001281491	240057.0	Mm.328888	NM_001281491	ENSMUSG00000067629	Syngap1	Gm1963|Syngap	synaptic Ras GTPase activating protein 1 homolog (rat)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83607854-2	chr7	83607354	83608354	+	748.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177695, intron 12 of 22)	intron (NM_177695, intron 12 of 22)	22923.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137887063-2	chr5	137886563	137887563	+	748.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15305.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77773761-2	chr15	77773261	77774261	+	748.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 24 of 40)	intron (NM_022410, intron 24 of 40)	-16751.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113643636-2	chr6	113643136	113644136	+	748.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 1 of 11)	(TTTTG)n|Simple_repeat|Simple_repeat	5169.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136124890-2	chr1	136124390	136125390	+	748.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6293.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97777299-2	chr11	97776799	97777799	+	748.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_022891)	TTS (NM_022891)	-1381.0	NM_028156	72215.0	Mm.269049	NM_028156	ENSMUSG00000018543	1700001P01Rik	-	RIKEN cDNA 1700001P01 gene	protein-coding	2.5	8.5	2.5	2.0	0.0	0.5
Merged-chr1-44552015-2	chr1	44551515	44552515	+	748.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028450, intron 1 of 10)	CpG	344.0	NM_028450	70676.0	Mm.133132	NM_027506	ENSMUSG00000056870	Gulp1	3110030A04Rik|5730529O06Rik|CED-6|Ced6|GULP|Gulp-2	GULP, engulfment adaptor PTB domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68446762-2	chr11	68446262	68447262	+	748.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	L1M5|LINE|L1	14637.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69623983-2	chr11	69623483	69624483	+	748.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001356469)	TTS (NM_001356469)	1931.0	NM_001356468	69215.0	Mm.340410	NM_026991	ENSMUSG00000069835	Sat2	2610016A03Rik|SSAT-2|SSAT2	spermidine/spermine N1-acetyl transferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26547969-3	chr17	26547460	26548460	+	748.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13552.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64431810-2	chr13	64431319	64432319	+	748.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053180)	promoter-TSS (NM_053180)	-734.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	5.0	17.5	19.0	14.5	25.5	11.5
Merged-chr2-153549723-1	chr2	153549223	153550223	+	748.5	f1_c57bl6.idr	Intergenic	Intergenic	-19752.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-105175794-2	chr14	105175294	105176294	+	748.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134077, intron 1 of 20)	intron (NM_134077, intron 1 of 20)	1533.0	NM_134077	74213.0	Mm.474531	NM_134077	ENSMUSG00000022119	Rbm26	1700009P03Rik|AI447318|C230097K14Rik|C86225|MLZ-393|Pro1777|Se70-2	RNA binding motif protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-17566218-2	chr2	17565718	17566718	+	748.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028757, intron 3 of 6)	intron (NM_028757, intron 3 of 6)	2704.0	NR_105847	102465964.0		NR_105847	ENSMUSG00000099161	Mir6419	Gm27713|mmu-mir-6419	microRNA 6419	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120326616-4	chr14	120326144	120327144	+	748.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 2 of 8)	B4|SINE|B4	20192.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72539467-3	chr8	72538956	72539956	+	748.455566	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027485, intron 1 of 2)	B3A|SINE|B2	8854.0	NM_027485	70625.0	Mm.235885	NM_027485	ENSMUSG00000045248	Med26	5730493L18Rik|AI414941|AW495270|Crsp7	mediator complex subunit 26	protein-coding	1.0	6.5	3.5	2.5	7.0	5.5
Merged-chr10-86863654-3	chr10	86863129	86864129	+	748.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 54 of 68)	intron (NM_138673, intron 54 of 68)	84624.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-16307161-3	chr9	16306649	16307649	+	748.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 1 of 24)	MTE2b|LTR|ERVL-MaLR	71082.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79833533-2	chr15	79833062	79834062	+	748.416626	f1_balb.idr|f1_c57bl6.idr	exon (NM_028763, exon 4 of 5)	exon (NM_028763, exon 4 of 5)	771.0	NM_001013360	504193.0	Mm.38438	NM_029079	ENSMUSG00000089837	Npcd	Cbx6-Nptxr	neuronal pentraxin chromo domain	protein-coding	2.5	0.0	1.5	4.5	0.5	0.0
Merged-chr16-22031878-5	chr16	22031417	22032417	+	748.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027488, intron 9 of 16)	ID_B1|SINE|B4	22433.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155095442-2	chr1	155094942	155095942	+	748.400024	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010500)	TTS (NM_010500)	4194.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122678494-6	chr8	122677932	122678932	+	748.377808	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177289)	promoter-TSS (NM_177289)	-257.0	NM_177289	12398.0	Mm.194339	NM_009824	ENSMUSG00000006362	Cbfa2t3	A630044F12Rik|AI465270|AW229127|Cbfa2t3h|ETO-2|Eto2|MTGR2	core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr9-61860423-2	chr9	61859923	61860923	+	748.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54087.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25301788-3	chr14	25301324	25302324	+	748.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157361.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	4.5	1.0	0.5	0.0	0.0	0.0
Merged-chr1-180853563-2	chr1	180853063	180854063	+	748.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_145943, intron 1 of 6)	intron (NM_145943, intron 1 of 6)	2412.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59802993-3	chr2	59802524	59803524	+	748.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290659, intron 13 of 25)	intron (NM_001290659, intron 13 of 25)	79582.0	NM_001159636	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106433140-3	chr8	106432637	106433637	+	748.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17798.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121470391-3	chr10	121469888	121470888	+	748.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	RCHARR1|DNA|hAT-Charlie	5862.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	31.0	71.0	45.5	33.0	96.0	62.0
Merged-chr4-88523474-2	chr4	88522974	88523974	+	748.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010510)	promoter-TSS (NM_010510)	-680.0	NM_010510	15977.0	Mm.1245	NM_010510	ENSMUSG00000048806	Ifnb1	IFN-beta|IFNB|Ifb	interferon beta 1, fibroblast	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77318921-3	chr11	77318418	77319418	+	748.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 1 of 14)	RMER6A|LTR|ERVK	-29362.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118279163-3	chr7	118278673	118279673	+	748.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35266.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-26904422-6	chr5	26903927	26904927	+	748.305542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198886)	promoter-TSS (NM_001198886)	-351.0	NM_001198886	13483.0	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	4.0	2.0	1.5	2.5	2.0	1.0
Merged-chr15-101127604-2	chr15	101127104	101128104	+	748.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277259)	promoter-TSS (NM_001277259)	-918.0	NM_001277258	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	1.0	0.0	0.5	1.0	0.0	0.0
Merged-chr11-32535709-2	chr11	32535209	32536209	+	748.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	B2_Mm2|SINE|B2	2443.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	2.0	8.5	2.5	6.0	4.0	13.0
Merged-chr8-84104193-2	chr8	84103693	84104693	+	748.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172502, intron 1 of 12)	intron (NM_172502, intron 1 of 12)	604.0	NM_001357322	212123.0	Mm.260557	NM_172502	ENSMUSG00000037103	Dcaf15	6720484B16	DDB1 and CUL4 associated factor 15	protein-coding	0.0	1.0	0.0	1.0	0.0	1.0
Merged-chr1-36267862-2	chr1	36267362	36268362	+	748.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_153408, intron 3 of 3)	RLTR17B_Mm|LTR|ERVK	5563.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108835947-2	chr6	108835432	108836432	+	748.25	f0_balb.idr|f0_c57.idr	intron (NM_138677, intron 1 of 11)	RSINE1|SINE|B4	7291.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115575194-2	chr5	115574698	115575698	+	748.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_172719, exon 4 of 58)	exon (NM_172719, exon 4 of 58)	-5751.0	NR_105996	102466790.0		NR_105996	ENSMUSG00000099047	Mir7029	Gm27293|mmu-mir-7029	microRNA 7029	ncRNA	0.0	3.5	3.5	0.0	2.0	6.0
Merged-chr10-44267327-2	chr10	44266827	44267827	+	748.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1012.0	NM_001314013	11793.0	Mm.22264	NM_053069	ENSMUSG00000038160	Atg5	2010107M05Rik|3110067M24Rik|AW319544|Apg5l|Atg5l|C88337|Paddy	autophagy related 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120943885-2	chr9	120943385	120944385	+	748.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007614, intron 1 of 14)	intron (NM_007614, intron 1 of 14)	10307.0	NM_001165902	12387.0	Mm.291928	NM_007614	ENSMUSG00000006932	Ctnnb1	Bfc|Catnb|Mesc	catenin (cadherin associated protein), beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-79853624-2	chr1	79853124	79854124	+	748.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009255, intron 1 of 8)	B4|SINE|B4	5041.0	NM_009255	20720.0	Mm.3093	NM_009255	ENSMUSG00000026249	Serpine2	B230326M24Rik|PAI-1|PI-7|PI7|PN-1|Spi4	serine (or cysteine) peptidase inhibitor, clade E, member 2	protein-coding	3.0	0.0	4.0	0.5	3.5	1.5
Merged-chr16-11282197-2	chr16	11281697	11282697	+	748.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-27752.0	NR_035466	100316833.0		NR_035466	ENSMUSG00000088544	Mir1945	mir-1945|mmu-mir-1945	microRNA 1945	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30262304-3	chr16	30261807	30262807	+	748.233337	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027904, intron 1 of 1)	MIR|SINE|MIR	5225.0	NM_027904	71756.0	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84480432-3	chr3	84479916	84480916	+	748.233337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205355)	promoter-TSS (NM_001205355)	23.0	NM_001033301	229474.0	Mm.331107	NM_001033301	ENSMUSG00000041842	Fhdc1	6330505N24Rik|Gm126	FH2 domain containing 1	protein-coding	0.0	0.0	0.5	0.0	0.0	3.5
Merged-chr2-145588587-3	chr2	145588095	145589095	+	748.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053195, intron 7 of 16)	intron (NM_053195, intron 7 of 16)	-33613.0	NM_001037929	627302.0	Mm.445953	NM_001037929		Gm14092	-	predicted gene 14092	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154334889-3	chr4	154334403	154335403	+	748.194458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291026, intron 11 of 16)	intron (NM_001291026, intron 11 of 16)	-35008.0	NM_001112744	230972.0	Mm.38481	NM_001112744	ENSMUSG00000029032	Arhgef16	-	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding	4.0	10.0	1.5	0.0	0.0	0.5
Merged-chr6-115836076-4	chr6	115835576	115836576	+	748.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110506, intron 1 of 8)	ORR1A3|LTR|ERVL-MaLR	2336.0	NM_001110506	212516.0	Mm.333333	NM_198603	ENSMUSG00000030321	Efcab12	BB124106	EF-hand calcium binding domain 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3581647-4	chr19	3581192	3582192	+	748.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MuRRS-int|LTR|ERV1	-5943.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	1.5	6.5	5.5	0.5	6.5	0.0
Merged-chr5-35104997-2	chr5	35104497	35105497	+	748.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_013587, intron 1 of 7)	intron (NM_013587, intron 1 of 7)	700.0	NM_013587	16976.0	Mm.277661	NM_013587	ENSMUSG00000029103	Lrpap1	AA617339|AI790446|AU042172|C77774|HBP44|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-68266524-2	chr12	68266024	68267024	+	748.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	892662.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	0.5	1.0	1.0	0.0	0.0	1.0
Merged-chr18-65764510-2	chr18	65764010	65765010	+	748.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36068.0	NM_025468	66286.0	Mm.27800	NM_025468	ENSMUSG00000024516	Sec11c	1810029G24Rik|Sec11l3	SEC11 homolog C, signal peptidase complex subunit	protein-coding	10.0	5.5	0.0	0.5	0.0	1.5
Merged-chr15-99034863-2	chr15	99034363	99035363	+	748.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009448, intron 3 of 3)	intron (NM_009448, intron 3 of 3)	4972.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-123263382-4	chr6	123262879	123263879	+	748.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163161, intron 1 of 5)	intron (NM_001163161, intron 1 of 5)	1272.0	NM_010819	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121188285-2	chr5	121187785	121188785	+	748.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_011202, intron 1 of 15)	intron (NM_011202, intron 1 of 15)	3112.0	NM_001109992	19247.0	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	0.5	0.5	1.5	0.5	3.5	3.0
Merged-chr15-100685140-2	chr15	100684640	100685640	+	748.125	f1_balb.idr|f1_c57bl6.idr	exon (NM_033612, exon 3 of 8)	exon (NM_033612, exon 3 of 8)	2780.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	1.5	5.0	2.5	2.5	3.0	0.5
Merged-chr2-47088924-3	chr2	47088435	47089435	+	748.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1392330.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-5421632-3	chr5	5421127	5422127	+	748.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41376.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-137116136-3	chr2	137115646	137116646	+	748.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013822, intron 1 of 25)	CpG-8595	374.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44590959-6	chr7	44590529	44591529	+	748.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290682, exon 1 of 5)	exon (NM_001290682, exon 1 of 5)	143.0	NM_001290682	16504.0	Mm.40312	NM_008422	ENSMUSG00000062785	Kcnc3	KShIIID|Kcr2-3|Kv3.3	potassium voltage gated channel, Shaw-related subfamily, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90059522-3	chr9	90059024	90060024	+	748.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312649, intron 1 of 10)	RMER15|LTR|ERVL	5257.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	26.0	58.5	45.5	42.0	77.5	57.5
Merged-chr12-79842370-2	chr12	79841870	79842870	+	748.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82363.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165769868-2	chr1	165769368	165770368	+	748.099976	f1_balb.idr|f1_c57bl6.idr	exon (NM_011804, exon 2 of 4)	exon (NM_011804, exon 2 of 4)	6110.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127568975-2	chr3	127568471	127569471	+	748.083374	f0_c57.idr|f1_c57bl6.idr	intron (NM_197997, intron 7 of 25)	MTC|LTR|ERVL-MaLR	15482.0	NM_197997	71643.0	Mm.274884	NM_197997	ENSMUSG00000051278	Zgrf1	4930422G04Rik|AI448607	zinc finger, GRF-type containing 1	protein-coding	6.5	38.5	15.5	0.5	0.5	5.0
Merged-chr10-68673672-4	chr10	68673177	68674177	+	748.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E2|LTR|ERVL-MaLR	-50069.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124470733-4	chr5	124470315	124471315	+	748.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030259, intron 1 of 3)	intron (NM_030259, intron 1 of 3)	7420.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-104946835-4	chr5	104946333	104947333	+	748.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030239, intron 13 of 15)	Lx8b|LINE|L1	35884.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	2.5	23.0	18.0	13.0	12.5	14.0
Merged-chr15-74932684-3	chr15	74932144	74933144	+	748.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR6-int|LTR|ERV1	-22407.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	132.5	310.5	160.5	56.5	145.5	86.0
Merged-chr4-21727000-3	chr4	21726480	21727480	+	748.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290420)	promoter-TSS (NM_001290420)	-721.0	NM_001290422	51813.0	Mm.278584	NM_016746	ENSMUSG00000028252	Ccnc	AI451004|AU020987|CG1C	cyclin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-53376961-4	chr9	53376466	53377466	+	748.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_176846, exon 6 of 6)	exon (NM_176846, exon 6 of 6)	-7057.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr5-99348526-2	chr5	99348026	99349026	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-95599.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58755963-2	chr15	58755463	58756463	+	748.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	67464.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97802985-2	chr6	97802485	97803485	+	748.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4073.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32369157-1	chr4	32368657	32369657	+	748.0	f0_balb.idr	Intergenic	Intergenic	-48278.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35985625-2	chr16	35985125	35986125	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008465, intron 1 of 13)	B3|SINE|B2	2262.0	NM_008465	16646.0	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124811450-2	chr6	124810950	124811950	+	748.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001306050)	TTS (NM_001306050)	2532.0	NM_001306053	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84690872-2	chr18	84690372	84691372	+	748.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-5170.0	NM_023149	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-9072988-2	chr15	9072488	9073488	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040395, intron 1 of 12)	intron (NM_001040395, intron 1 of 12)	1728.0	NM_001040395	68646.0	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135374514-2	chr5	135374014	135375014	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153312, intron 6 of 9)	intron (NR_153312, intron 6 of 9)	4561.0	NM_145414	100609.0	Mm.281189	NM_145414	ENSMUSG00000000916	Nsun5	9830109N13Rik|AI326939|Nol1r|Wbscr20|Wbscr20a	NOL1/NOP2/Sun domain family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-85046624-2	chr2	85046125	85047125	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_182990, intron 16 of 16)	intron (NM_182990, intron 16 of 16)	-3835.0	NM_001081260	228140.0	Mm.23606	NM_001081260	ENSMUSG00000033955	Tnks1bp1	Tab182|mKIAA1741	tankyrase 1 binding protein 1	protein-coding	2.5	0.0	2.0	3.5	0.5	5.0
Merged-chr14-48458360-1	chr14	48457860	48458860	+	748.0	f1_c57bl6.idr	intron (NM_001310584, intron 4 of 16)	intron (NM_001310584, intron 4 of 16)	12008.0	NR_132324	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	125.5	228.0	180.0	134.5	308.5	212.0
Merged-chr2-132234586-2	chr2	132234086	132235086	+	748.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	13202.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140643063-2	chr5	140642563	140643563	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308040, intron 1 of 12)	RSINE1|SINE|B4	5968.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-162517908-1	chr1	162517408	162518408	+	748.0	f1_c57bl6.idr	Intergenic	Intergenic	30437.0	NM_144877	71449.0	Mm.270569	NM_144877	ENSMUSG00000026694	Mettl13	5630401D24Rik	methyltransferase like 13	protein-coding	5.0	3.0	6.5	2.0	0.0	0.0
Merged-chr1-86360387-2	chr1	86359887	86360887	+	748.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010880)	promoter-TSS (NM_010880)	813.0	NR_015507	319336.0	Mm.389155	NR_015507	ENSMUSG00000073627	C130036L24Rik	-	RIKEN cDNA C130036L24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135958471-2	chr5	135957979	135958979	+	748.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	15997.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	22.5	51.5	38.0	23.0	32.0	45.0
Merged-chr8-107104768-2	chr8	107104268	107105268	+	748.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-8223.0	NR_104410	21750.0	Mm.6402	NM_009353	ENSMUSG00000031921	Terf2	TRF2	telomeric repeat binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-38227321-2	chr7	38226821	38227821	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024413, intron 1 of 1)	intron (NM_024413, intron 1 of 1)	673.0	NM_024413	72287.0	Mm.333798	NM_024413	ENSMUSG00000074170	Plekhf1	1810013P09Rik|APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology domain containing, family F (with FYVE domain) member 1	protein-coding	3.5	13.0	1.5	5.5	3.5	1.0
Merged-chr4-149700183-1	chr4	149699683	149700683	+	748.0	f1_c57bl6.idr	intron (NM_001029837, intron 1 of 23)	intron (NM_001029837, intron 1 of 23)	1446.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	37.0	38.0	56.5	14.0	48.0	35.5
Merged-chr3-116804679-2	chr3	116804180	116805180	+	748.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_001362367, intron 2 of 27)	intron (NM_001362367, intron 2 of 27)	3486.0	NM_001362367	77559.0	Mm.237099	NM_001081326	ENSMUSG00000033400	Agl	1110061O17Rik|9430004C13Rik|9630046L06Rik|AI850929|C77197	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	protein-coding	1.5	13.5	1.0	2.5	1.0	0.0
Merged-chr18-80843950-2	chr18	80843478	80844478	+	748.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_015805, intron 10 of 28)	intron (NM_015805, intron 10 of 28)	90080.0	NM_001201569	50771.0	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr10-116560701-2	chr10	116560201	116561201	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359563, intron 1 of 13)	intron (NM_001359563, intron 1 of 13)	19835.0	NM_001359250	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160362848-1	chr2	160362348	160363348	+	748.0	f0_balb.idr	TTS (NM_010658)	TTS (NM_010658)	4217.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3943632-2	chr19	3943132	3944132	+	748.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001161428, exon 8 of 10)	exon (NM_001161428, exon 8 of 10)	8446.0	NM_001161428	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99630234-2	chr12	99629734	99630734	+	748.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-2260.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97482869-2	chr6	97482369	97483369	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	4951.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	65.5	189.0	124.5	37.5	194.0	97.5
Merged-chr10-122895230-4	chr10	122894721	122895721	+	748.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 6 of 9)	intron (NM_001110218, intron 6 of 9)	90503.0	NR_029527	387251.0		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166631422-2	chr2	166630922	166631922	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 5 of 39)	intron (NM_177782, intron 5 of 39)	66900.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86156577-2	chr1	86156077	86157077	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027456, intron 1 of 20)	intron (NM_027456, intron 1 of 20)	1797.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31367745-2	chr14	31367245	31368245	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009796, intron 16 of 20)	RSINE1|SINE|B4	31107.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-89986183-3	chr16	89985681	89986681	+	748.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11482.0	NM_001145886	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117333221-2	chr11	117332721	117333721	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113488, intron 1 of 9)	intron (NM_001113488, intron 1 of 9)	908.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-19021150-1	chr11	19020650	19021650	+	748.0	f0_balb.idr	Intergenic	Intergenic	-2181.0	NM_010789	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46846042-2	chr8	46845542	46846542	+	748.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008391, exon 9 of 9)	exon (NM_008391, exon 9 of 9)	106297.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35212714-2	chr9	35212214	35213214	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026130, intron 3 of 13)	intron (NM_026130, intron 3 of 13)	1511.0	NM_026130	67398.0	Mm.284688	NM_026130	ENSMUSG00000032042	Srpr	1300011P19Rik|D11Mgi27|Srpra	signal recognition particle receptor ('docking protein')	protein-coding	3.5	2.0	1.5	5.5	6.0	10.5
Merged-chr3-86986590-3	chr3	86986052	86987052	+	748.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007640)	promoter-TSS (NM_007640)	-34.0	NM_001289449	12480.0	Mm.389465	NM_007640	ENSMUSG00000041750	Cd1d2	CD1.2|Cd1b|Ly-38	CD1d2 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67540834-2	chr10	67540334	67541334	+	748.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010118, exon 2 of 2)	exon (NM_010118, exon 2 of 2)	2904.0	NM_001347458	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129414785-1	chr2	129414285	129415285	+	748.0	f1_balb.idr	Intergenic	Intergenic	-43646.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	2.0	21.0	10.5	48.5	100.5	49.0
Merged-chr9-110781997-2	chr9	110781497	110782497	+	748.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16188.0	NM_153099	235628.0	Mm.292285	NM_153099	ENSMUSG00000044664	Prss42	Tessp2	protease, serine 42	protein-coding	0.0	1.5	1.0	4.0	0.0	3.0
Merged-chr7-130801214-2	chr7	130800714	130801714	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081038, intron 9 of 15)	RSINE1|SINE|B4	27145.0	NM_001081038	330660.0	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-67048025-2	chr11	67047525	67048525	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025510, intron 2 of 4)	RMER6B|LTR|ERVK	4593.0	NM_025510	66358.0	Mm.22511	NM_025510	ENSMUSG00000020910	Adprm	2310004I24Rik|MDS006	ADP-ribose/CDP-alcohol diphosphatase, manganese dependent	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-21374833-1	chr12	21374333	21375333	+	748.0	f1_c57bl6.idr	Intergenic	Intergenic	-1201.0	NM_009615	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	19.0	31.0	36.0	9.0	4.0	11.0
Merged-chr1-180607146-2	chr1	180606646	180607646	+	748.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19945.0	NR_105869	102466761.0		NR_105869	ENSMUSG00000098926	Mir6904	Gm27426|mmu-mir-6904	microRNA 6904	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6564585-2	chr15	6564085	6565085	+	748.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15262.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34256443-1	chr17	34255943	34256943	+	748.0	f1_c57bl6.idr	Intergenic	RMER17D2|LTR|ERVK	-6784.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	11.5	11.0	1.0	5.5	14.5	0.0
Merged-chr4-154942092-2	chr4	154941583	154942583	+	748.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-14006.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	2.0	16.5	17.0	7.5	40.5	32.5
Merged-chr9-13312948-2	chr9	13312424	13313424	+	748.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	65968.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	0.0	5.0	0.0	6.0	8.5	7.5
Merged-chr5-45449243-2	chr5	45448743	45449743	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024236, intron 1 of 6)	intron (NM_024236, intron 1 of 6)	986.0	NM_024236	110391.0	Mm.30204	NM_024236	ENSMUSG00000015806	Qdpr	2610008L04Rik|D5Ertd371e|Dhpr|PKU2	quinoid dihydropteridine reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-6738005-1	chr10	6737505	6738505	+	748.0	f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-20588.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	3.0	1.5	0.5	0.0	4.5	0.5
Merged-chr12-35879570-2	chr12	35879070	35880070	+	748.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46051.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	11.0	13.0	8.5	6.5	7.0	6.0
Merged-chr17-83647554-2	chr17	83647054	83648054	+	748.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-15659.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96751092-1	chr10	96750592	96751592	+	748.0	f0_balb.idr	Intergenic	Intergenic	134091.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138517559-3	chr1	138517056	138518056	+	747.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 5 of 9)	intron (NM_021605, intron 5 of 9)	102201.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95915087-3	chr8	95914626	95915626	+	747.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26761.0	NM_010325	14719.0	Mm.230169	NM_010325	ENSMUSG00000031672	Got2	AL022787|FABP-pm|Got-2|Kyat4|mAspAT	glutamatic-oxaloacetic transaminase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35209538-4	chr17	35209057	35210057	+	747.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4206.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128765685-5	chr2	128765164	128766164	+	747.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 8 of 18)	intron (NM_008587, intron 8 of 18)	-52639.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	6.0	16.0	25.0	22.5	39.0	15.0
Merged-chr9-99587831-2	chr9	99587338	99588338	+	747.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12039.0	NM_031403	83703.0	Mm.31324	NM_031403	ENSMUSG00000032469	Dbr1	AW018415	debranching RNA lariats 1	protein-coding	0.0	0.5	1.0	0.0	0.0	0.5
Merged-chr10-77268254-2	chr10	77267754	77268754	+	747.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_030262, intron 8 of 8)	intron (NM_030262, intron 8 of 8)	8954.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116338515-3	chr9	116337991	116338991	+	747.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	149311.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84988604-3	chr8	84988066	84989066	+	747.777771	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2029.0	NM_133255	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	15.0	10.0	13.0	5.5	15.0	10.0
Merged-chr13-23689141-4	chr13	23688635	23689635	+	747.766663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023422, intron 1 of 1)	intron (NM_023422, intron 1 of 1)	4936.0	NM_023422	68024.0	Mm.261676	NM_023422	ENSMUSG00000018102	Hist1h2bc	2610022J01Rik|H2bfs|R74621	histone cluster 1, H2bc	protein-coding	5.0	2.0	2.0	0.0	3.0	0.0
Merged-chr11-118483049-2	chr11	118482549	118483549	+	747.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_153103, intron 7 of 13)	intron (NR_153103, intron 7 of 13)	6217.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-8343459-2	chr6	8342959	8343959	+	747.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302354, intron 2 of 3)	MER91B|DNA|hAT-Tip100	84171.0	NM_001302353	100036521.0	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-106909192-2	chr4	106908741	106909741	+	747.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2229.0	NM_198438	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	7.0	8.0	11.0	4.0	3.0	1.5
Merged-chr7-19878726-2	chr7	19878226	19879226	+	747.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_177036, intron 6 of 6)	intron (NM_177036, intron 6 of 6)	9239.0	NM_177036	319930.0	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84337730-4	chr3	84337215	84338215	+	747.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32940.0	NM_001271726	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	0.0	1.5	0.0	0.0	1.5	0.0
Merged-chr11-73137623-7	chr11	73137050	73138050	+	747.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010353, exon 1 of 1)	exon (NM_010353, exon 1 of 1)	744.0	NM_010353	14841.0	Mm.42045	NM_010353	ENSMUSG00000050107	Haspin	Gsg2	histone H3 associated protein kinase	protein-coding	19.5	33.5	35.0	25.0	42.5	25.5
Merged-chr4-32342544-2	chr4	32342044	32343044	+	747.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-74891.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120325224-3	chr14	120324730	120325730	+	747.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_207515, exon 2 of 8)	5' UTR (NM_207515, exon 2 of 8)	18778.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119324274-3	chr9	119323785	119324785	+	747.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1858.0	NM_133985	108737.0	Mm.293565	NM_133985	ENSMUSG00000036737	Oxsr1	2210022N24Rik|2810422B09Rik|AI462649|AW209236|Osr1|mKIAA1101	oxidative-stress responsive 1	protein-coding	12.0	35.0	25.0	19.5	35.0	6.5
Merged-chr17-57246148-3	chr17	57245629	57246629	+	747.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030084, intron 2 of 16)	Lx8|LINE|L1	1341.0	NM_001308074	78308.0	Mm.28468	NM_030084	ENSMUSG00000005823	Gpr108	1810015L19Rik|AA589464|C79132|Lustr2	G protein-coupled receptor 108	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-140269133-3	chr1	140268589	140269589	+	747.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081027, intron 1 of 27)	intron (NM_001081027, intron 1 of 27)	22832.0	NM_001081027	240776.0	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91111336-3	chr6	91110844	91111844	+	747.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018815, intron 1 of 39)	intron (NM_018815, intron 1 of 39)	5482.0	NM_018815	54563.0	Mm.28162	NM_018815	ENSMUSG00000030091	Nup210	9830001L10|AI836801|Pom210|gp190|gp210	nucleoporin 210	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87523678-3	chr11	87523177	87524177	+	747.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 18 of 30)	intron (NM_001199293, intron 18 of 30)	-54712.0	NM_001361936	18952.0	Mm.2214	NM_011129	ENSMUSG00000020486	Sept4	ARTS|Bh5|Pnutl2	septin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58521416-2	chr16	58520916	58521916	+	747.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 1 of 10)	intron (NM_001357433, intron 1 of 10)	2010.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.0	2.5	1.0	3.0	2.5	6.5
Merged-chr11-106162676-2	chr11	106162176	106163176	+	747.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028126)	TTS (NM_028126)	-1947.0	NM_001356458	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.0	2.0	0.0	1.0	0.0	0.5
Merged-chr7-88270124-2	chr7	88269624	88270624	+	747.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-7961.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99537542-2	chr7	99537042	99538042	+	747.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_178220, intron 1 of 14)	intron (NM_178220, intron 1 of 14)	2056.0	NM_177231	109689.0	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	14.5	7.0	0.5	4.0	1.5	6.0
Merged-chr9-14860150-4	chr9	14859694	14860694	+	747.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310734)	promoter-TSS (NM_001310734)	-16.0	NM_001310734	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-17356468-4	chr19	17356001	17357001	+	747.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010265, intron 1 of 2)	CpG	166.0	NM_173442	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	26.5	68.0	57.5	26.0	77.0	42.0
Merged-chr16-30071896-2	chr16	30071396	30072396	+	747.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	6539.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64398873-3	chr17	64398369	64399369	+	747.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41937.0	NR_105848	102465228.0		NR_105848	ENSMUSG00000098984	Mir6420	Gm28007|mmu-mir-6420	microRNA 6420	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-8356244-2	chr14	8355744	8356744	+	747.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_146050, intron 6 of 9)	intron (NM_146050, intron 6 of 9)	-11196.0	NR_151471	102632156.0		NR_151471		2610318M16Rik	-	RIKEN cDNA 2610318M16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100720253-3	chr11	100719667	100720667	+	747.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_024456, exon 2 of 6)	5' UTR (NM_024456, exon 2 of 6)	6317.0	NM_029307	75482.0	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173511814-4	chr1	173511314	173512314	+	747.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	24143.0	NM_001024721	545384.0	Mm.371698	NM_001024721	ENSMUSG00000070501	Ifi214	Pyhin-B|p214	interferon activated gene 214	protein-coding	13.0	16.5	14.5	3.5	14.0	8.0
Merged-chr14-62922833-3	chr14	62922330	62923330	+	747.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 3 of 11)	intron (NM_175546, intron 3 of 11)	57288.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55822777-4	chr1	55822239	55823239	+	747.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108502.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	11.5	18.5	6.0	10.0	26.0	13.5
Merged-chr17-87391847-2	chr17	87391347	87392347	+	747.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029298, intron 6 of 6)	intron (NM_029298, intron 6 of 6)	35894.0	NM_029298	75467.0	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93881892-2	chr16	93881392	93882392	+	747.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2009.0	NM_028083	110749.0	Mm.274222	NM_028083	ENSMUSG00000022945	Chaf1b	2600017H24Rik|C76145|CAF-I p60|CAF-Ip60|CAF1|CAF1A|CAF1P60|MPHOSPH7	chromatin assembly factor 1, subunit B (p60)	protein-coding	0.0	0.0	0.0	0.0	3.0	0.0
Merged-chr10-19094927-2	chr10	19094427	19095427	+	747.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46822.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59493709-3	chr2	59493213	59494213	+	747.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029723, intron 1 of 3)	intron (NM_029723, intron 1 of 3)	9060.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50322073-2	chr16	50321573	50322573	+	747.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347240, intron 3 of 16)	intron (NM_001347240, intron 3 of 16)	110316.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29485966-2	chr6	29485466	29486466	+	747.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029985, intron 31 of 37)	intron (NM_001029985, intron 31 of 37)	14529.0	NM_001145360	668210.0	Mm.420607	NM_001145360	ENSMUSG00000090685	Gm9047	EG668210	predicted gene 9047	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79673898-4	chr11	79673403	79674403	+	747.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045898, intron 2 of 2)	intron (NR_045898, intron 2 of 2)	1183.0	NR_045898	72218.0	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA	7.5	21.0	8.5	3.0	5.0	8.5
Merged-chr1-85245051-1	chr1	85244551	85245551	+	747.5	f1_balb.idr	Intergenic	Intergenic	25515.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-127827475-3	chr1	127826993	127827993	+	747.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011737, intron 6 of 9)	intron (NM_011737, intron 6 of 9)	12797.0	NM_011737	22625.0	Mm.246566	NM_011737	ENSMUSG00000051590	Map3k19	Ysk4	mitogen-activated protein kinase kinase kinase 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125170388-2	chr6	125169888	125170888	+	747.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146171, intron 27 of 31)	intron (NM_146171, intron 27 of 31)	-3921.0	NM_001289726	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	0.0	1.0	0.5	0.0	0.0	0.0
Merged-chr6-65525446-2	chr6	65524946	65525946	+	747.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64952.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122032190-1	chr2	122031690	122032690	+	747.5	f0_c57.idr	intron (NM_001256055, intron 2 of 7)	intron (NM_001256055, intron 2 of 7)	3607.0	NM_001256055	100042807.0	Mm.329403	NM_001256055	ENSMUSG00000043424	Eif3j2	Eif3j-2|Gm9781|eIF3 p35|eIF3j-B	eukaryotic translation initiation factor 3, subunit J2	protein-coding	6.5	4.5	11.0	0.0	0.0	3.5
Merged-chr7-118653224-2	chr7	118652724	118653724	+	747.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028930, intron 8 of 17)	intron (NM_028930, intron 8 of 17)	19488.0	NM_028930	74424.0	Mm.11068	NM_028930	ENSMUSG00000030650	Tmc5	4932443L08Rik|AU016085	transmembrane channel-like gene family 5	protein-coding	1.0	8.0	3.5	1.0	9.5	5.0
Merged-chr7-128173458-2	chr7	128172958	128173958	+	747.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029872)	promoter-TSS (NM_001029872)	-488.0	NM_001029872	381924.0	Mm.334257	NM_001029872	ENSMUSG00000070369	Itgad	Cd11d	integrin, alpha D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-70389894-2	chr4	70389394	70390394	+	747.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145990, intron 3 of 36)	intron (NM_145990, intron 3 of 36)	20541.0	NM_001313762	214444.0	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45545877-2	chr19	45545377	45546377	+	747.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14687.0	NM_001330506	56626.0	Mm.46509	NM_020032	ENSMUSG00000025218	Poll	1110003P06Rik|AV007317	polymerase (DNA directed), lambda	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96396312-2	chr9	96395812	96396812	+	747.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31881.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	12.0	61.0	41.0	12.5	50.0	24.5
Merged-chr6-29444322-2	chr6	29443822	29444822	+	747.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001311074, exon 13 of 47)	exon (NM_001311074, exon 13 of 47)	11066.0	NM_001311074	68794.0	Mm.39046	NM_026839	ENSMUSG00000068699	Flnc	1110055E19Rik|ABP-280|ABPL|Fln2	filamin C, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132807946-2	chr4	132807446	132808446	+	747.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11582.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	2.0	10.0	11.0	3.5	13.5	13.5
Merged-chr2-27679486-2	chr2	27678986	27679986	+	747.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	2285.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119227001-2	chr11	119226501	119227501	+	747.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347625, intron 1 of 11)	RSINE1|SINE|B4	1498.0	NM_001347625	207592.0	Mm.205263	NM_172443	ENSMUSG00000039976	Tbc1d16	B930087K01|BC026530|Tcd1d16	TBC1 domain family, member 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-114736477-2	chr13	114735977	114736977	+	747.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVL-int|LTR|ERVL	-81760.0	NM_013826	17434.0	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64722337-4	chr5	64721836	64722836	+	747.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-81187.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	3.0	7.5	13.5	14.0	21.0	1.0
Merged-chr2-132246428-2	chr2	132245928	132246928	+	747.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001141971, intron 1 of 3)	intron (NM_001141971, intron 1 of 3)	1360.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80431975-2	chr10	80431475	80432475	+	747.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164153, intron 1 of 18)	intron (NM_001164153, intron 1 of 18)	1678.0	NM_001164150	21423.0	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-22730580-2	chr10	22730080	22731080	+	747.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011603, intron 1 of 6)	intron (NM_011603, intron 1 of 6)	867.0	NM_011603	237336.0	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150747471-2	chr2	150746971	150747971	+	747.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1610.0	NM_001355068	12497.0	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-6364231-2	chr7	6363731	6364731	+	747.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177888, intron 1 of 4)	ORR1C1-int|LTR|ERVL-MaLR	923.0	NM_001112805	330463.0	Mm.136456	NM_177888	ENSMUSG00000055150	Zfp78	A330079D15|KRAB12|Zfp77	zinc finger protein 78	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-95133318-2	chr7	95132816	95133816	+	747.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1037928.0	NM_001310762	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-52432354-2	chr5	52431854	52432854	+	747.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001256059, intron 3 of 11)	intron (NM_001256059, intron 3 of 11)	-8805.0	NR_152197	100041805.0	Mm.417070	NR_152197		Gm3519	Gm43683	predicted gene 3519	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28367823-2	chr7	28367323	28368323	+	747.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001083912, exon 9 of 19)	exon (NM_001083912, exon 9 of 19)	4839.0	NM_138752	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49046415-2	chr16	49045915	49046915	+	747.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-11071.0	NM_001166210	667772.0	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67261519-2	chr10	67261019	67262019	+	747.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB-int|LTR|ERVL-MaLR	23762.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24492523-2	chr16	24492023	24493023	+	747.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 3 of 12)	intron (NM_178665, intron 3 of 12)	-36791.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95554676-2	chr9	95554176	95555176	+	747.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5141.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166796247-2	chr2	166795747	166796747	+	747.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023815, exon 2 of 2)	3' UTR (NM_023815, exon 2 of 2)	2480.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58678661-2	chr1	58678161	58679161	+	747.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347056, intron 4 of 13)	intron (NM_001347056, intron 4 of 13)	13784.0	NM_001347056	108812.0	Mm.442063	NM_175370	ENSMUSG00000047528	Als2cr12	4933405P16Rik|4933425F06Rik	amyotrophic lateral sclerosis 2 chromosome region 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61038511-2	chr9	61038011	61039011	+	747.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21442.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134203757-2	chr4	134203257	134204257	+	747.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080712)	promoter-TSS (NM_001080712)	-753.0	NM_001080712	665186.0	Mm.318615	NM_001080712	ENSMUSG00000073747	Gm7534	EG665186	predicted gene 7534	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30137688-2	chr14	30137188	30138188	+	747.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 9 of 46)	intron (NM_001083616, intron 9 of 46)	115055.0	NM_175343	218865.0	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56715554-2	chr17	56715054	56716054	+	747.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_178926, exon 2 of 2)	exon (NM_178926, exon 2 of 2)	1367.0	NM_178926	106639.0	Mm.37290	NM_178926	ENSMUSG00000054723	Vmac	AI662250	vimentin-type intermediate filament associated coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3713206-3	chr4	3712693	3713693	+	747.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	-1771.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	14.0	52.5	16.0	22.5	40.5	28.5
Merged-chr16-49852198-2	chr16	49851698	49852698	+	747.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR18D_MM|LTR|ERVK	-3456.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165693893-2	chr1	165693393	165694393	+	747.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	14201.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-145165202-2	chr5	145164702	145165702	+	747.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133735, exon 2 of 9)	exon (NM_133735, exon 2 of 9)	1902.0	NM_133735	71799.0	Mm.277413	NM_133735	ENSMUSG00000029624	Ptcd1	1110069M14Rik	pentatricopeptide repeat domain 1	protein-coding	0.0	2.5	0.5	0.5	0.0	0.5
Merged-chr14-74868772-3	chr14	74868290	74869290	+	747.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	79087.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99229621-3	chr5	99229114	99230114	+	747.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 8 of 13)	MER58B|DNA|hAT-Charlie	23313.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85702834-2	chr12	85702334	85703334	+	747.458374	f1_balb.idr|f1_c57bl6.idr	intron (NM_016767, intron 2 of 2)	intron (NM_016767, intron 2 of 2)	16114.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34859738-4	chr1	34859216	34860216	+	747.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357425, intron 2 of 8)	intron (NM_001357425, intron 2 of 8)	9727.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-174441762-5	chr2	174441210	174442210	+	747.43335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2671.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0.0	0.5	7.0	1.0	0.0	2.0
Merged-chr3-127803019-2	chr3	127802517	127803517	+	747.416626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	12360.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	10.0	25.5	32.0	8.0	29.5	27.0
Merged-chr5-121823328-2	chr5	121822879	121823879	+	747.395874	f1_balb.idr|f1_c57bl6.idr	intron (NM_001306126, intron 3 of 8)	intron (NM_001306126, intron 3 of 8)	-4106.0	NR_105998	102465624.0		NR_105998	ENSMUSG00000099063	Mir7031	Gm27859|mmu-mir-7031	microRNA 7031	ncRNA	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr13-108214413-4	chr13	108213933	108214933	+	747.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029001)	promoter-TSS (NM_029001)	29.0	NM_029001	74559.0	Mm.286127	NM_029001	ENSMUSG00000021696	Elovl7	9130013K24Rik|AI840082	ELOVL family member 7, elongation of long chain fatty acids (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119446645-4	chr8	119446143	119447143	+	747.354187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054095)	promoter-TSS (NM_054095)	-76.0	NM_054095	117148.0	Mm.356184	NM_054095	ENSMUSG00000031837	Necab2	Efcbp2	N-terminal EF-hand calcium binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128657725-2	chr4	128657225	128658225	+	747.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	3023.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61188582-2	chr10	61188082	61189082	+	747.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001017419, intron 9 of 9)	intron (NM_001017419, intron 9 of 9)	13320.0	NM_023064	65971.0	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83571323-2	chr11	83570823	83571823	+	747.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	7313.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64232016-3	chr5	64231503	64232503	+	747.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	1646.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-83235643-3	chr4	83235167	83236167	+	747.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 17 of 19)	intron (NM_027238, intron 17 of 19)	88522.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	32.5	38.0	31.0	6.5	57.0	21.0
Merged-chr4-97564960-3	chr4	97564469	97565469	+	747.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16974.0	NM_001122952	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161767376-3	chr1	161766915	161767915	+	747.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21080.0	NM_001205243	14103.0	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	4.0	1.0	3.5	2.0	9.0	7.5
Merged-chr2-173680438-2	chr2	173679938	173680938	+	747.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_024436, intron 2 of 6)	intron (NM_024436, intron 2 of 6)	20593.0	NM_024436	19334.0	Mm.275304	NM_024436	ENSMUSG00000027519	Rab22a	3732413A17Rik|AI662177|AW319644|AW550514|E130120E14Rik|Rab22	RAB22A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35111243-3	chr2	35110732	35111732	+	747.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012018, intron 1 of 43)	intron (NM_012018, intron 1 of 43)	1740.0	NM_012018	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95680472-7	chr10	95679988	95680988	+	747.31427	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21B|LTR|ERVL	-116342.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-48676130-3	chr6	48675639	48676639	+	747.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174960)	promoter-TSS (NM_174960)	4.0	NM_174960	317758.0	Mm.116971	NM_174960	ENSMUSG00000051124	Gimap9	A630002K24|BB145400	GTPase, IMAP family member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11165407-2	chr19	11164907	11165907	+	747.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027074)	promoter-TSS (NM_027074)	-87.0	NM_027074	69416.0	Mm.72491	NM_027074	ENSMUSG00000024728	1700025F22Rik	-	RIKEN cDNA 1700025F22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-30175548-2	chr6	30175048	30176048	+	747.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1075.0	NR_038124	100463519.0	Mm.361139	NR_038124		BB283400	BF465573|Rncr4	expressed sequence BB283400	ncRNA	0.0	3.0	2.0	0.0	2.5	0.5
Merged-chr12-16532589-3	chr12	16532088	16533088	+	747.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57182.0	NM_015763	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	8.0	4.5	2.0	0.5	11.0	3.0
Merged-chr19-3944259-2	chr19	3943759	3944759	+	747.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_019449, exon 9 of 11)	exon (NM_019449, exon 9 of 11)	9073.0	NM_001161428	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152695952-2	chr2	152695411	152696411	+	747.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_010376, intron 10 of 11)	intron (NM_010376, intron 10 of 11)	8763.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	3.5	16.5	2.0	2.0	17.0	1.5
Merged-chr13-103742652-2	chr13	103742152	103743152	+	747.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172592, exon 10 of 10)	3' UTR (NM_172592, exon 10 of 10)	21930.0	NM_172592	218543.0	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-15150897-4	chr18	15150373	15151373	+	747.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134112, intron 1 of 4)	CpG	573.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37249748-3	chr10	37249214	37250214	+	747.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110788.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25292026-2	chr2	25291526	25292526	+	747.200012	f1_balb.idr|f1_c57bl6.idr	TTS (NM_146117)	TTS (NM_146117)	806.0	NM_001242940	320354.0	Mm.445875	NM_001242940		Grin1os	E130003G02Rik	glutamate receptor, ionotropic, NMDA1 (zeta 1), opposite strand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-89442133-3	chr10	89441591	89442591	+	747.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079876, intron 1 of 10)	intron (NM_001079876, intron 1 of 10)	1876.0	NM_001284344	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	6.0	14.0	12.5	3.0	13.0	17.0
Merged-chr1-154274909-3	chr1	154274414	154275414	+	747.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEg|LINE|L1	-18008.0	NR_040629	78112.0	Mm.401935	NR_040629	ENSMUSG00000099933	4930452N14Rik	-	RIKEN cDNA 4930452N14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86904258-3	chr4	86903788	86904788	+	747.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290543, intron 4 of 5)	intron (NM_001290543, intron 4 of 5)	29874.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	4.0	7.5	1.5	5.5	11.0	4.5
Merged-chr1-171843803-3	chr1	171843233	171844233	+	747.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289470, intron 2 of 8)	B1F2|SINE|Alu	4036.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	92.5	222.0	187.5	98.5	218.5	139.0
Merged-chr11-17052853-3	chr11	17052353	17053353	+	747.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029861, intron 1 of 2)	intron (NM_029861, intron 1 of 2)	919.0	NM_029861	380686.0	Mm.425666	NM_029861	ENSMUSG00000044629	Cnrip1	1500041B16Rik|3110054C06Rik|5330437A18Rik|AI854501|C2orf32	cannabinoid receptor interacting protein 1	protein-coding	11.5	0.0	0.0	0.5	10.5	2.5
Merged-chr5-115487859-2	chr5	115487359	115488359	+	747.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-3375.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	2.0	22.5	18.0	4.5	16.0	17.0
Merged-chr10-67637445-2	chr10	67636945	67637945	+	747.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-65486.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44410686-4	chr11	44410184	44411184	+	747.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303244, intron 5 of 7)	intron (NM_001303244, intron 5 of 7)	10621.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	4.0	2.0	1.0	0.0	9.0	0.0
Merged-chr1-189973182-2	chr1	189972646	189973646	+	747.125	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-50855.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	5.0	12.5	1.5	0.0	0.0	7.0
Merged-chr15-73687705-3	chr15	73687202	73688202	+	747.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19803.0	NM_173365	239530.0	Mm.122997	NM_173365	ENSMUSG00000045281	Gpr20	A430106B11Rik	G protein-coupled receptor 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167944328-3	chr2	167943797	167944797	+	747.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	11970.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94927059-2	chr10	94926559	94927559	+	747.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 1 of 30)	intron (NM_018797, intron 1 of 30)	17519.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-99126227-4	chr13	99125715	99126715	+	747.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-38294.0	NR_045495	69603.0	Mm.390632	NR_045495	ENSMUSG00000100410	2310020H05Rik	-	RIKEN cDNA 2310020H05 gene	ncRNA	0.0	3.0	2.0	0.0	1.0	0.0
Merged-chr7-107519563-4	chr7	107519051	107520051	+	747.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021889, intron 6 of 6)	intron (NM_021889, intron 6 of 6)	-47882.0	NM_172907	244198.0	Mm.77425	NM_172907	ENSMUSG00000051041	Olfml1	6720478C22|AV321997|BC047207|MVAL564|ONT2|mONT2	olfactomedin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54712175-4	chr14	54711675	54712675	+	747.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207131)	promoter-TSS (NM_207131)	-1.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	5.5	13.5	9.0	5.5	7.0	4.5
Merged-chr19-47837390-4	chr19	47836894	47837894	+	747.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027559)	promoter-TSS (NM_027559)	-33.0	NM_027559	100048534.0	Mm.29457	NM_027559	ENSMUSG00000044948	Cfap43	4632415N18Rik|4930428C11Rik|4930463G05Rik|AI429486|D19Ertd652e|Wdr96	cilia and flagella associated protein 43	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111048080-2	chr9	111047580	111048580	+	747.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9164.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-10469340-2	chr15	10468840	10469840	+	747.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030046, intron 1 of 11)	A-rich|Low_complexity|Low_complexity	1176.0	NM_030046	78244.0	Mm.297862	NM_030046	ENSMUSG00000044224	Dnajc21	4930461P20Rik|9930116P15Rik	DnaJ heat shock protein family (Hsp40) member C21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77253749-2	chr10	77253249	77254249	+	747.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	5474.0	NR_026944	100169878.0	Mm.420901	NR_026944	ENSMUSG00000078444	Gm10941	-	predicted gene 10941	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81582479-2	chr10	81581979	81582979	+	747.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019725, intron 10 of 20)	intron (NM_019725, intron 10 of 20)	7192.0	NM_001252401	21886.0	Mm.38608	NM_019725	ENSMUSG00000034771	Tle2	Grg2|mKIAA4188	transducin-like enhancer of split 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87485201-2	chr6	87484704	87485704	+	747.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 4 of 10)	intron (NM_001037727, intron 4 of 10)	11123.0	NR_104483	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	3.5	0.0	2.5	0.0	2.5	0.0
Merged-chr16-30733920-1	chr16	30733420	30734420	+	747.0	f0_c57.idr	Intergenic	Intergenic	134197.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	1.0	2.0	3.5	0.5	0.0	2.5
Merged-chr6-87810453-2	chr6	87809953	87810953	+	747.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133717)	promoter-TSS (NM_133717)	-696.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	11.0	31.5	23.5	20.5	19.0	12.5
Merged-chr6-90714918-1	chr6	90714418	90715418	+	747.0	f0_balb.idr	intron (NM_001356440, intron 1 of 13)	intron (NM_001356440, intron 1 of 13)	1611.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73314531-2	chr2	73314031	73315031	+	747.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355711, intron 1 of 3)	intron (NM_001355711, intron 1 of 3)	1879.0	NM_001355711	74616.0	Mm.247457	NM_029022	ENSMUSG00000008226	Scrn3	4833415E20Rik|AI427019|AV002033|Ses3	secernin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-53562002-2	chr8	53561502	53562502	+	747.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	50300.0	NM_001005847	11593.0	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136177992-2	chr4	136177509	136178509	+	747.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177733, intron 1 of 6)	intron (NM_177733, intron 1 of 6)	-2773.0	NM_001305399	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr1-58696261-4	chr1	58695742	58696742	+	747.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175370)	promoter-TSS (NM_175370)	-253.0	NM_175370	108812.0	Mm.442063	NM_175370	ENSMUSG00000047528	Als2cr12	4933405P16Rik|4933425F06Rik	amyotrophic lateral sclerosis 2 chromosome region 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34504071-1	chr18	34503571	34504571	+	747.0	f1_c57bl6.idr	intron (NM_146084, intron 1 of 20)	MTD|LTR|ERVL-MaLR	2752.0	NM_146084	225358.0	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	11.0	26.0	36.5	18.0	37.5	42.0
Merged-chr1-120028849-1	chr1	120028349	120029349	+	747.0	f1_c57bl6.idr	intron (NM_001012322, intron 3 of 13)	intron (NM_001012322, intron 3 of 13)	21869.0	NM_001012322	319229.0	Mm.189223	NM_001012322	ENSMUSG00000026387	Sctr	6530402O03Rik	secretin receptor	protein-coding	1.5	0.0	2.0	0.0	2.0	0.5
Merged-chr11-87736472-2	chr11	87735972	87736972	+	747.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172448)	TTS (NM_172448)	-1079.0	NM_001355753	20922.0	Mm.622	NM_009296	ENSMUSG00000020485	Supt4a	AL022777|Supt4h|Supt4h1|Supt4h1a	suppressor of Ty 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38971777-2	chr6	38971277	38972277	+	747.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	ORR1B1|LTR|ERVL-MaLR	52791.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61677815-2	chr14	61677315	61678315	+	747.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	MT2B1|LTR|ERVL	4558.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-83703010-2	chr12	83702510	83703510	+	747.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362271, intron 3 of 11)	intron (NM_001362271, intron 3 of 11)	14447.0	NM_008943	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11054603-3	chr16	11054096	11055096	+	747.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11702.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-109066440-2	chr14	109065940	109066940	+	747.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-152201.0	NM_199065	76965.0	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4920033-1	chr2	4919533	4920533	+	747.0	f1_balb.idr	intron (NM_010726, intron 1 of 8)	intron (NM_010726, intron 1 of 8)	1037.0	NM_010726	16922.0	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	1.0	10.0	9.0	26.5	11.0	16.0
Merged-chr12-76871455-2	chr12	76870955	76871955	+	747.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145927, intron 2 of 11)	intron (NM_145927, intron 2 of 11)	33988.0	NM_145927	110606.0	Mm.151174	NM_145927	ENSMUSG00000033373	Fntb	2010013E13Rik|AA409500	farnesyltransferase, CAAX box, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-144908032-2	chr7	144907544	144908544	+	747.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7056.0	NM_001357868	72284.0	Mm.273049	NM_028184	ENSMUSG00000031072	Oraov1	2210010N10Rik|TAOS1	oral cancer overexpressed 1	protein-coding	5.5	0.0	0.0	0.0	0.0	5.5
Merged-chr5-124097063-2	chr5	124096563	124097563	+	747.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-1265.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-73023957-2	chr11	73023457	73024457	+	747.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018883, intron 1 of 15)	L2a|LINE|L2	4949.0	NM_018883	55984.0	Mm.9998	NM_018883	ENSMUSG00000020785	Camkk1	AI846603|CaMKKalpha|Camkk	calcium/calmodulin-dependent protein kinase kinase 1, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80736053-2	chr10	80735553	80736553	+	747.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007460, intron 1 of 30)	B1_Mur1|SINE|Alu	6222.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-10874810-2	chr15	10874310	10875310	+	747.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	45759.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107708136-4	chr9	107707510	107708510	+	747.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011349, intron 1 of 17)	intron (NM_011349, intron 1 of 17)	-2419.0	NM_001311151	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	0.0	0.0	1.0	0.0	0.0	0.5
Merged-chr14-121992156-1	chr14	121991656	121992656	+	747.0	f1_c57bl6.idr	intron (NM_026861, intron 6 of 8)	intron (NM_026861, intron 6 of 8)	-26963.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	15.0	45.5	31.0	9.0	2.5	2.5
Merged-chr9-21479014-2	chr9	21478514	21479514	+	747.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001253893, exon 10 of 21)	exon (NM_001253893, exon 10 of 21)	17550.0	NR_029585	387194.0		NR_029585	ENSMUSG00000065547	Mir199a-1	Mirn199|Mirn199a-1|mir-199a-1	microRNA 199a-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123718554-2	chr5	123718054	123719054	+	747.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027494, intron 2 of 13)	B1_Mus1|SINE|Alu	2490.0	NM_027494	70650.0	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-172430877-2	chr2	172430377	172431377	+	747.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080820, intron 6 of 6)	intron (NM_001080820, intron 6 of 6)	-9701.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117954288-2	chr11	117953788	117954788	+	747.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15078.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73709034-2	chr12	73708534	73709534	+	747.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 9 of 13)	intron (NM_008856, intron 9 of 13)	124238.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35053055-1	chr12	35052555	35053555	+	747.0	f1_c57bl6.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	5866.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	20.0	53.0	15.5	15.0	32.5	17.5
Merged-chr4-114926417-2	chr4	114925917	114926917	+	747.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015758)	promoter-TSS (NM_015758)	-404.0	NM_015758	30923.0	Mm.377122	NM_015758	ENSMUSG00000044518	Foxe3	FREAC8|dyl|rct	forkhead box E3	protein-coding	0.0	0.0	1.5	0.0	1.0	0.0
Merged-chr7-34968799-1	chr7	34968299	34969299	+	747.0	f1_balb.idr	intron (NM_008820, intron 7 of 14)	ORR1B2|LTR|ERVL-MaLR	56392.0	NM_008820	18624.0	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	3.0	14.0	6.5	7.0	14.0	6.5
Merged-chr16-36747366-2	chr16	36746866	36747866	+	747.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37596.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90228269-2	chr9	90227769	90228769	+	747.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 4 of 12)	ORR1F|LTR|ERVL-MaLR	42500.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-79994462-1	chr18	79993962	79994962	+	747.0	f1_balb.idr	Intergenic	L1_Mus2|LINE|L1	-52433.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	50.5	84.0	51.5	56.0	81.5	75.0
Merged-chr9-104576323-1	chr9	104575823	104576823	+	747.0	f0_balb.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	6840.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	9.0	8.0	13.0	9.5	5.0	32.5
Merged-chr2-164825204-2	chr2	164824704	164825704	+	747.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028028, exon 2 of 2)	exon (NM_028028, exon 2 of 2)	2518.0	NM_028028	71971.0	Mm.161149	NM_028028	ENSMUSG00000017764	Zswim1	2410003H12Rik|AI850991|BB046916	zinc finger SWIM-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-37958946-2	chr18	37958446	37959446	+	747.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153793, exon 8 of 8)	3' UTR (NM_153793, exon 8 of 8)	3387.0	NM_153793	225392.0	Mm.233516	NM_153793	ENSMUSG00000044024	Rell2	4631403P03Rik|ependolin	RELT-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36765315-2	chr18	36764815	36765815	+	747.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_173383, exon 3 of 4)	exon (NM_173383, exon 3 of 4)	899.0	NM_173383	213236.0	Mm.234464	NM_173383	ENSMUSG00000044595	Dnd1	BC034897|RBMS4|Ter	DND microRNA-mediated repression inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85470846-2	chr12	85470373	85471373	+	747.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-3017.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87223815-2	chr3	87223312	87224312	+	747.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	39712.0	NM_030707	80891.0	Mm.45173	NM_030707	ENSMUSG00000015852	Fcrls	2810439C17Rik|9330158F12|FcRH2sc|Fcrh2|IFGP2|IgSR|MMAN-g|Msr2|moFcRH2sc	Fc receptor-like S, scavenger receptor	protein-coding	7.0	4.5	5.5	3.5	2.0	2.0
Merged-chr2-4448267-2	chr2	4447767	4448767	+	747.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	RLTR20C2_MM|LTR|ERVK	47291.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136394698-1	chr1	136394198	136395198	+	747.0	f0_balb.idr	Intergenic	Intergenic	-20573.0	NM_026500	67997.0	Mm.385462	NM_026500	ENSMUSG00000026404	Ddx59	1210002B07Rik|4833411G06Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11050020-1	chr8	11049520	11050520	+	747.0	f0_balb.idr	intron (NR_046017, intron 2 of 4)	intron (NR_046017, intron 2 of 4)	-41590.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-84985586-1	chr16	84985086	84986086	+	747.0	f0_balb.idr	intron (NM_001198825, intron 12 of 15)	ORR1E|LTR|ERVL-MaLR	13375.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6425522-1	chr15	6425022	6426022	+	747.0	f0_balb.idr	intron (NM_001008702, intron 9 of 13)	intron (NM_001008702, intron 9 of 13)	-19811.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75168600-2	chr8	75168100	75169100	+	747.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45344.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	0.0	2.5	0.0	0.0	0.0	0.0
Merged-chr19-37544182-3	chr19	37543681	37544681	+	747.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6237.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-148246710-3	chr6	148246215	148247215	+	747.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198967, intron 16 of 19)	intron (NM_198967, intron 16 of 19)	-34341.0	NM_001286560	67456.0	Mm.59812	NM_026168	ENSMUSG00000030304	Ergic2	1200009B18Rik|4930572C01Rik|AA408438|Ptx1	ERGIC and golgi 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88730492-2	chr10	88729992	88730992	+	747.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025859)	promoter-TSS (NM_025859)	609.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-121908160-2	chr1	121907660	121908660	+	747.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-296985.0	NR_151524	102638832.0	Mm.112794	NR_151524	ENSMUSG00000099960	Gm28590	-	predicted gene 28590	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-20023982-2	chr3	20023482	20024482	+	747.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 5 of 16)	intron (NM_080634, intron 5 of 16)	11328.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103381300-1	chr3	103380800	103381800	+	747.0	f1_balb.idr	Intergenic	Intergenic	102007.0	NM_053170	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	6.0	12.5	1.5	0.0	0.0	3.0
Merged-chr17-24142300-2	chr17	24141818	24142818	+	747.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011062)	promoter-TSS (NM_011062)	-724.0	NM_001080773	18607.0	Mm.10504	NM_011062	ENSMUSG00000024122	Pdpk1	Pdk1	3-phosphoinositide dependent protein kinase 1	protein-coding	2.5	3.0	10.5	0.0	8.0	3.5
Merged-chr13-89634448-3	chr13	89633987	89634987	+	747.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93851.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101617081-2	chr7	101616638	101617638	+	747.0	f0_balb.idr|f0_c57.idr	Intergenic	MLTR11B|LTR|ERVK	-35977.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	23.0	25.5	24.0	16.0	55.0	29.0
Merged-chr18-52750921-3	chr18	52750432	52751432	+	747.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16879.0	NM_026408	67847.0	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56599061-3	chr19	56598540	56599540	+	747.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025811)	TTS (NM_025811)	50779.0	NM_025811	66866.0	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120565446-2	chr8	120564946	120565946	+	746.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 3 of 15)	intron (NM_001145896, intron 3 of 15)	23629.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-52385401-4	chr10	52384845	52385845	+	746.895874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3221.0	NM_001199272	94221.0	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65541057-2	chr9	65540557	65541557	+	746.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	39030.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-72201679-4	chr2	72201159	72202159	+	746.875	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355478, intron 11 of 26)	intron (NM_001355478, intron 11 of 26)	-83978.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	30.0	96.5	59.0	2.0	3.5	8.0
Merged-chr17-71184415-2	chr17	71183930	71184930	+	746.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	452.0	NM_022882	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	15.0	24.5	25.0	14.0	26.0	21.5
Merged-chr11-75139472-2	chr11	75138972	75139972	+	746.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 14 of 18)	intron (NM_001002764, intron 14 of 18)	28680.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-33628198-2	chr5	33627698	33628698	+	746.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359461)	promoter-TSS (NM_001359461)	-687.0	NM_001359461	74504.0	Mm.294695	NM_178390	ENSMUSG00000037339	Fam53a	2410018C17Rik|5430419M09Rik|Dntnp	family with sequence similarity 53, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61405970-2	chr14	61405470	61406470	+	746.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008466, intron 1 of 16)	L1MD|LINE|L1	33977.0	NM_008466	16648.0	Mm.25548	NM_008466	ENSMUSG00000021929	Kpna3	IPOA4	karyopherin (importin) alpha 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182991132-3	chr1	182990633	182991633	+	746.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36345.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0.0	0.0	0.0	0.0	6.5	0.0
Merged-chr17-29459750-3	chr17	29459253	29460253	+	746.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31292.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.0	5.0	5.0	0.0	2.0	1.0
Merged-chr10-116473381-2	chr10	116472881	116473881	+	746.799988	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_130644, exon 1 of 3)	non-coding (NR_130644, exon 1 of 3)	142.0	NM_021452	58802.0	Mm.440652	NM_021452	ENSMUSG00000054934	Kcnmb4	1700058G18Rik|2900045G12Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-90225318-4	chr15	90224756	90225756	+	746.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_106106)	TTS (NR_106106)	896.0	NR_106106	102466838.0		NR_106106	ENSMUSG00000099319	Mir7648	Gm27736|mmu-mir-7648	microRNA 7648	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148681712-3	chr4	148681226	148682226	+	746.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38409.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	6.5	2.0	5.5	0.0	2.0	9.0
Merged-chr5-74673038-2	chr5	74672537	74673537	+	746.75	f0_balb.idr|f1_balb.idr	intron (NM_001159578, intron 1 of 12)	intron (NM_001159578, intron 1 of 12)	4835.0	NM_001159580	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	0.0	1.0	1.5	2.0	6.5	4.0
Merged-chr10-81187024-2	chr10	81186524	81187524	+	746.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190473, intron 2 of 8)	intron (NM_001190473, intron 2 of 8)	3106.0	NM_007828	13144.0	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93518000-2	chr2	93517500	93518500	+	746.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55050.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27858933-2	chr17	27858433	27859433	+	746.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080769, intron 1 of 20)	intron (NM_001080769, intron 1 of 20)	2426.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	0.0	3.5	6.0	5.5	3.5	5.0
Merged-chr17-86787992-2	chr17	86787481	86788481	+	746.75	f0_balb.idr|f1_balb.idr	intron (NM_010137, intron 1 of 15)	intron (NM_010137, intron 1 of 15)	34117.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.0	1.0	1.0	0.0	0.0	0.0
Merged-chr5-99965640-4	chr5	99965159	99966159	+	746.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077265, intron 4 of 8)	intron (NM_001077265, intron 4 of 8)	13279.0	NM_001077266	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17406723-4	chr16	17406252	17407252	+	746.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001983)	promoter-TSS (NM_001001983)	-438.0	NM_001001983	224020.0	Mm.5718	NM_001001983	ENSMUSG00000041720	Pi4ka	Pik4ca	phosphatidylinositol 4-kinase alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136459182-4	chr1	136458691	136459691	+	746.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8657.0	NM_001287179	381293.0	Mm.458468	NM_001081258	ENSMUSG00000041498	Kif14	D1Ertd367e|E130203M01	kinesin family member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-91019983-3	chr8	91019481	91020481	+	746.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 25 of 39)	intron (NM_177224, intron 25 of 39)	-50076.0	NM_001282001	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	3.0	5.5	3.5	5.5	6.0	6.5
Merged-chr1-43338063-3	chr1	43337561	43338561	+	746.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107690.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115992052-3	chr6	115991463	115992463	+	746.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026376, intron 1 of 35)	intron (NM_026376, intron 1 of 35)	3042.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55028588-3	chr13	55028115	55029115	+	746.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011307, exon 15 of 15)	exon (NM_011307, exon 15 of 15)	-7230.0	NM_001033245	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	11.0	14.0	21.5	10.0	13.5	17.0
Merged-chr1-184771826-3	chr1	184771296	184772296	+	746.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39303.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67118089-2	chr15	67117589	67118589	+	746.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 3 of 8)	(CA)n|Simple_repeat|Simple_repeat	58793.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	22.0	25.5	10.0	14.5	25.5	18.0
Merged-chr7-66334293-2	chr7	66333778	66334778	+	746.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 3 of 33)	ORR1B2|LTR|ERVL-MaLR	47446.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	0.0	0.0	1.0	0.0	0.0	3.5
Merged-chr17-34303968-2	chr17	34303457	34304457	+	746.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1910.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	67.0	164.0	58.0	69.0	168.5	73.0
Merged-chr4-43530581-5	chr4	43529951	43530951	+	746.65332	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6897.0	NM_001277875	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	2.5	12.5	5.5	0.0	12.5	6.0
Merged-chr14-64794880-4	chr14	64794292	64795292	+	746.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081177, intron 37 of 39)	intron (NM_001081177, intron 37 of 39)	142261.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	3.0	2.5	0.0	6.0	0.0	0.0
Merged-chr2-52605545-3	chr2	52605038	52606038	+	746.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	-46927.0	NM_001285427	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25894149-3	chr17	25893639	25894639	+	746.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139154, intron 2 of 6)	intron (NM_139154, intron 2 of 6)	8088.0	NR_028042	100043160.0	Mm.482893	NR_028042		Gm10012	-	cytochrome c oxidase, subunit VIIc pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-99095607-3	chr6	99095070	99096070	+	746.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053202, intron 4 of 18)	intron (NM_053202, intron 4 of 18)	-67272.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-183668041-3	chr1	183667555	183668555	+	746.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80922.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	8.5	7.5	6.5	7.0	3.0	8.0
Merged-chr3-14836942-3	chr3	14836440	14837440	+	746.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-26598.0	NM_007606	12350.0	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32230259-4	chr12	32229763	32230763	+	746.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21614.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	6.0	15.0	4.5	2.0	8.0	9.0
Merged-chr16-31936980-2	chr16	31936480	31937480	+	746.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172822, intron 1 of 2)	L1Md_F2|LINE|L1	3129.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23742264-2	chr17	23741764	23742764	+	746.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_028416, exon 9 of 10)	exon (NM_028416, exon 9 of 10)	-1934.0	NM_023824	76498.0	Mm.491253	NM_023824	ENSMUSG00000023909	Paqr4	1500004C10Rik	progestin and adipoQ receptor family member IV	protein-coding	0.0	0.0	0.0	0.0	2.5	0.0
Merged-chr3-96557280-2	chr3	96556780	96557780	+	746.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023719)	promoter-TSS (NM_023719)	-677.0	NM_023719	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42170486-2	chr10	42169986	42170986	+	746.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106256.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-84750901-2	chr6	84750401	84751401	+	746.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 19 of 21)	intron (NM_177077, intron 19 of 21)	-156993.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120475745-2	chr10	120475245	120476245	+	746.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347170, intron 1 of 5)	CpG	724.0	NM_001347170	15364.0	Mm.157190	NM_010441	ENSMUSG00000056758	Hmga2	9430083A20Rik|HMGI-C|Hmgic|pg|pygmy	high mobility group AT-hook 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120450077-2	chr14	120449577	120450577	+	746.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4-int|LTR|ERVL-MaLR	-28384.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118692507-2	chr14	118692007	118693007	+	746.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163676, intron 1 of 29)	intron (NM_001163676, intron 1 of 29)	13712.0	NM_001163676	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97402205-2	chr11	97401705	97402705	+	746.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39654.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88081392-2	chr3	88080892	88081892	+	746.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033484)	promoter-TSS (NM_001033484)	-659.0	NM_001033484	404710.0	Mm.331133	NM_001033484	ENSMUSG00000028068	Iqgap3	AI593484|D030034H08	IQ motif containing GTPase activating protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118743626-2	chr9	118743126	118744126	+	746.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	31934.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.5	0.0	0.0	0.0	0.0	3.0
Merged-chr16-87841243-2	chr16	87840743	87841743	+	746.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68028.0	NR_155304	105246151.0	Mm.449986	NR_155304		4930590A17Rik	-	RIKEN cDNA 4930590A17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133338770-1	chr4	133338270	133339270	+	746.5	f0_balb.idr	intron (NM_199306, intron 1 of 15)	intron (NM_199306, intron 1 of 15)	545.0	NM_199306	230796.0	Mm.226576	NM_199306	ENSMUSG00000037622	Wdtc1	Gm695|adipose|adp	WD and tetratricopeptide repeats 1	protein-coding	0.0	1.5	1.0	2.0	0.5	1.0
Merged-chr13-55826452-2	chr13	55825952	55826952	+	746.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011097, exon 3 of 3)	exon (NM_011097, exon 3 of 3)	4973.0	NM_011097	18740.0	Mm.135195	NM_011097	ENSMUSG00000021506	Pitx1	Bft|P-OTX|Potx|Ptx1	paired-like homeodomain transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52620874-2	chr13	52620374	52621374	+	746.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001198977, exon 4 of 14)	exon (NM_001198977, exon 4 of 14)	23992.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21201700-2	chr13	21201351	21202351	+	746.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	21920.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	0.0	1.5	0.0	1.0	1.5	1.5
Merged-chr5-5373174-2	chr5	5372674	5373674	+	746.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	7077.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24699575-2	chr13	24699075	24700075	+	746.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080381, intron 13 of 14)	(CAGA)n|Simple_repeat|Simple_repeat	60927.0	NM_029679	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24152956-2	chr10	24152456	24153456	+	746.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016797, intron 1 of 9)	intron (NM_016797, intron 1 of 9)	3639.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80806695-2	chr10	80806141	80807141	+	746.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_007445, exon 4 of 5)	exon (NM_007445, exon 4 of 5)	1393.0	NM_007445	11705.0	Mm.376094	NM_007445	ENSMUSG00000035262	Amh	MIS	anti-Mullerian hormone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167622605-2	chr2	167622105	167623105	+	746.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023230, intron 1 of 3)	intron (NM_023230, intron 1 of 3)	9400.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-70642755-2	chr18	70642255	70643255	+	746.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	74463.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	11.0	2.5	4.0	10.5	3.5	4.0
Merged-chr11-95831232-2	chr11	95830732	95831732	+	746.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_153104, exon 3 of 3)	exon (NM_153104, exon 3 of 3)	6732.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-17755922-2	chr18	17755422	17756422	+	746.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-174932.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8666046-2	chr3	8665546	8666546	+	746.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010423, intron 3 of 4)	intron (NM_010423, intron 3 of 4)	992.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-45342650-2	chr6	45342150	45343150	+	746.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004357, intron 1 of 23)	intron (NM_001004357, intron 1 of 23)	282589.0	NM_001004357	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.0	1.0	0.0	0.0	0.5	0.0
Merged-chr15-6638372-2	chr15	6637872	6638872	+	746.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011815, intron 6 of 17)	intron (NM_011815, intron 6 of 17)	15931.0	NR_155272	102632231.0	Mm.444780	NR_155272		LOC102632231	-	uncharacterized LOC102632231	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180278433-2	chr2	180277933	180278933	+	746.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173031, intron 11 of 12)	intron (NM_173031, intron 11 of 12)	-4968.0	NM_145851	252966.0	Mm.386884	NM_145851	ENSMUSG00000038990	Cables2	ik3-2	CDK5 and Abl enzyme substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21956827-2	chr9	21956327	21957327	+	746.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132099)	promoter-TSS (NR_132099)	-821.0	NR_132099	100049077.0	Mm.46647	NR_132099		Gm45914	-	predicted gene, 45914	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59966551-2	chr10	59966051	59967051	+	746.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14781.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110121106-2	chr7	110120606	110121606	+	746.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355058)	promoter-TSS (NM_001355058)	-953.0	NM_001355058	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100966426-2	chr7	100965927	100966927	+	746.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2061.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr14-45655525-2	chr14	45655024	45656024	+	746.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176845, intron 1 of 12)	intron (NM_176845, intron 1 of 12)	2529.0	NR_039593	100628600.0		NR_039593	ENSMUSG00000093167	Mir5131	mmu-mir-5131|mu-mir-5131	microRNA 5131	ncRNA	15.5	31.5	28.0	17.0	8.5	16.5
Merged-chr5-139255079-2	chr5	139254579	139255579	+	746.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163316, intron 1 of 8)	intron (NM_001163316, intron 1 of 8)	1582.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17044964-2	chr6	17044464	17045464	+	746.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-20185.0	NM_207176	21753.0	Mm.436548	NM_011570	ENSMUSG00000029552	Tes	D6Ertd352e|TESS|Tes1|Tes2|testin2	testis derived transcript	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151757303-3	chr1	151756790	151757790	+	746.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311165, intron 1 of 20)	intron (NM_001311165, intron 1 of 20)	1916.0	NM_001311166	66967.0	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-85388485-2	chr10	85387985	85388985	+	746.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028709, intron 1 of 16)	CpG	1671.0	NM_028709	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	0.0	3.5	1.5	0.0	3.0	0.0
Merged-chr9-61515232-2	chr9	61514732	61515732	+	746.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERV3-16A3_I-int|LTR|ERVL	142866.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74842693-2	chr11	74842193	74843193	+	746.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010813, exon 6 of 6)	exon (NM_010813, exon 6 of 6)	11769.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77767533-2	chr15	77767033	77768033	+	746.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_022410, exon 32 of 41)	exon (NM_022410, exon 32 of 41)	-10523.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111877940-2	chr8	111877440	111878440	+	746.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-1265.0	NM_025781	66817.0	Mm.345350	NM_025781	ENSMUSG00000031953	Tmem170	9030409E16Rik|AA403674|D8Bwg1414e|Tmem170a	transmembrane protein 170	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150459718-2	chr4	150459219	150460219	+	746.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 4 of 22)	intron (NM_001085492, intron 4 of 22)	177803.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	1.5	0.0	1.5	1.5	0.0	0.5
Merged-chr11-53756750-2	chr11	53756250	53757250	+	746.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6904.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81543437-2	chr10	81542937	81543937	+	746.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010301, intron 1 of 6)	intron (NM_010301, intron 1 of 6)	1609.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88578979-2	chr5	88578479	88579479	+	746.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289774, intron 1 of 17)	MTB|LTR|ERVL-MaLR	-4534.0	NM_001359208	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18210898-4	chr16	18210403	18211403	+	746.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027843, exon 3 of 3)	non-coding (NR_027843, exon 3 of 3)	2630.0	NR_027843	66779.0	Mm.387525	NR_015575		4933432I09Rik	-	RIKEN cDNA 4933432I09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-60096751-3	chr1	60096281	60097281	+	746.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021312, intron 1 of 12)	MTD|LTR|ERVL-MaLR	1126.0	NM_021312	57750.0	Mm.281079	NM_021312	ENSMUSG00000026019	Wdr12	4933402C23Rik|Ytm1|Ytm1p	WD repeat domain 12	protein-coding	2.0	1.0	9.0	0.0	3.5	6.5
Merged-chr16-50201784-3	chr16	50201289	50202289	+	746.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 15 of 16)	intron (NM_027444, intron 15 of 16)	-128937.0	NR_045935	224180.0	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46327203-3	chr19	46326729	46327729	+	746.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133694)	promoter-TSS (NM_133694)	-73.0	NM_028627	73728.0	Mm.268532	NM_028627	ENSMUSG00000037126	Psd	1110007H17Rik|A930015K15|Efa6|Efa6a|Psdl|mKIAA2011	pleckstrin and Sec7 domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-89436054-3	chr10	89435532	89436532	+	746.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079876, intron 2 of 10)	intron (NM_001079876, intron 2 of 10)	7935.0	NM_001284344	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	4.5	2.5	1.0	0.0	3.0	0.0
Merged-chr10-84337903-4	chr10	84337389	84338389	+	746.408325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A|LTR|ERVK	102582.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-43707971-3	chr10	43707470	43708470	+	746.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38188.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-39659657-4	chr15	39659105	39660105	+	746.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256384)	promoter-TSS (NM_001256384)	94.0	NM_001256384	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81026038-2	chr13	81025538	81026538	+	746.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_015587, intron 1 of 1)	RMER17D2|LTR|ERVK	61964.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119412194-2	chr8	119411694	119412694	+	746.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17302.0	NM_019966	56690.0	Mm.423037	NM_019966	ENSMUSG00000074064	Mlycd	AI324784|Mcd	malonyl-CoA decarboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38940353-3	chr6	38939848	38940848	+	746.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	intron (NM_011539, intron 1 of 12)	21362.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21053307-2	chr14	21052807	21053807	+	746.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018829)	promoter-TSS (NM_018829)	733.0	NM_134079	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	1.5	3.5	3.0	3.5	11.0	4.5
Merged-chr13-41146516-2	chr13	41146016	41147016	+	746.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001324525, intron 14 of 27)	intron (NM_001324525, intron 14 of 27)	28505.0	NM_001324525	637277.0		NM_001324525	ENSMUSG00000038651	Sycp2l	EG621792|Gm268|Gm40956	synaptonemal complex protein 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126200987-2	chr4	126200487	126201487	+	746.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356456)	promoter-TSS (NM_001356456)	20.0	NM_001356456	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	3.5	8.0	9.0	2.5	6.0	5.0
Merged-chr8-120598922-3	chr8	120598417	120599417	+	746.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9842.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13511205-3	chr9	13510732	13511732	+	746.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79871.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	6.0	10.5	4.0	1.0	5.5	1.0
Merged-chr13-117202984-3	chr13	117202493	117203493	+	746.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-17580.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128544009-2	chr10	128543509	128544509	+	746.333313	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_134003, exon 3 of 3)	3' UTR (NM_134003, exon 3 of 3)	3735.0	NM_134003	103284.0	Mm.68289	NM_134003	ENSMUSG00000039810	Zc3h10	AI790326	zinc finger CCCH type containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-18038389-3	chr5	18037858	18038858	+	746.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75788.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11999211-4	chr4	11998713	11999713	+	746.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	32639.0	NR_040577	100503636.0	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-24049435-4	chr11	24048935	24049935	+	746.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28621.0	NM_016707	14025.0	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63560986-3	chr4	63560474	63561474	+	746.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001356354, exon 2 of 10)	5' UTR (NM_001356354, exon 2 of 10)	747.0	NM_144905	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-25840958-2	chr18	25840458	25841458	+	746.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86801.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158305903-2	chr2	158305415	158306415	+	746.25	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_008489)	promoter-TSS (NM_008489)	-578.0	NM_008489	16803.0	Mm.218846	NM_008489	ENSMUSG00000016024	Lbp	Bpifd2|Ly88	lipopolysaccharide binding protein	protein-coding	55.0	191.5	141.5	59.0	111.5	105.5
Merged-chr5-75979326-1	chr5	75978826	75979826	+	746.25	f0_balb.idr	promoter-TSS (NM_010612)	promoter-TSS (NM_010612)	-898.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4725419-4	chr7	4724917	4725917	+	746.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177887)	promoter-TSS (NM_177887)	-166.0	NM_177887	330460.0	Mm.361851	NM_177887	ENSMUSG00000046456	Tmem150b	A630041N19|Tmem224	transmembrane protein 150B	protein-coding	22.0	23.0	10.5	3.5	24.0	20.5
Merged-chr1-191876725-2	chr1	191876225	191877225	+	746.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-30056.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	14.5	20.5	29.5	10.0	37.0	26.5
Merged-chr16-49817041-4	chr16	49816532	49817532	+	746.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-38622.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109862643-4	chr8	109862107	109863107	+	746.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009677, exon 24 of 24)	3' UTR (NM_009677, exon 24 of 24)	-5996.0	NM_001122594	244650.0	Mm.23494	NM_001122594	ENSMUSG00000031732	Phlpp2	AI481772|C130044A18Rik|Phlppl	PH domain and leucine rich repeat protein phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142718153-2	chr5	142717653	142718653	+	746.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_146257, intron 7 of 10)	intron (NM_146257, intron 7 of 10)	16052.0	NM_146257	243328.0	Mm.125942	NM_146257	ENSMUSG00000050822	Slc29a4	ENT4|mPMAT	solute carrier family 29 (nucleoside transporters), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-57563083-4	chr18	57562594	57563594	+	746.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029290, intron 2 of 6)	intron (NM_029290, intron 2 of 6)	-10697.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-59178256-3	chr6	59177777	59178777	+	746.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-30593.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118480880-4	chr11	118480352	118481352	+	746.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153103, intron 3 of 13)	MTA_Mm|LTR|ERVL-MaLR	4020.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50501436-3	chr9	50500938	50501938	+	746.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029639, intron 3 of 3)	intron (NM_029639, intron 3 of 3)	3367.0	NR_040714	69631.0	Mm.414996	NR_040714	ENSMUSG00000101304	Plet1os	2310014F07Rik	placenta expressed transcript 1, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77822974-2	chr11	77822474	77823474	+	746.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_011586, intron 10 of 39)	intron (NM_011586, intron 10 of 39)	21676.0	NM_001291215	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93576382-2	chr1	93575882	93576882	+	746.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_145519, exon 10 of 27)	exon (NM_145519, exon 10 of 27)	59345.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34189202-2	chr5	34188702	34189702	+	746.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1492.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78478916-2	chr9	78478416	78479416	+	746.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010106, intron 7 of 7)	intron (NM_010106, intron 7 of 7)	2808.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-52815845-4	chr1	52815351	52816351	+	746.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008384, intron 1 of 5)	intron (NM_008384, intron 1 of 5)	1837.0	NM_008384	16329.0	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr13-54692022-2	chr13	54691522	54692522	+	746.125	f1_balb.idr|f1_c57bl6.idr	intron (NR_027396, intron 1 of 10)	intron (NR_027396, intron 1 of 10)	1938.0	NR_027395	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	3.0	0.0	8.0	1.0	7.5	3.0
Merged-chr18-62922355-3	chr18	62921843	62922843	+	746.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133237)	promoter-TSS (NM_133237)	16.0	NM_133237	494504.0	Mm.391102	NM_133237	ENSMUSG00000071847	Apcdd1	AB023957|AU041258|Drapc1|EIG180	adenomatosis polyposis coli down-regulated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-41565870-3	chr12	41565366	41566366	+	746.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	-79809.0	NM_010733	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4266801-3	chr11	4266271	4267271	+	746.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039537)	promoter-TSS (NM_001039537)	-25.0	NM_001039537	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-49214083-5	chr6	49213580	49214580	+	746.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023670, intron 1 of 14)	CpG	874.0	NM_023670	140488.0	Mm.281018	NM_023670	ENSMUSG00000029814	Igf2bp3	2610101N11Rik|AA522010|AL022933|AU045931|IMP-3|IMP3|Koc13|Neilsen|mimp3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr10-60388974-2	chr10	60388474	60389474	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 30 of 68)	(CA)n|Simple_repeat|Simple_repeat	-10752.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36596442-3	chr5	36595946	36596946	+	746.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-10220.0	NM_001113362	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0.0	7.5	2.5	1.0	0.0	0.0
Merged-chr5-137585128-2	chr5	137584628	137585628	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152864, intron 12 of 12)	intron (NR_152864, intron 12 of 12)	10593.0	NR_152864	50765.0	Mm.21757	NM_015799	ENSMUSG00000029716	Tfr2	Trfr2	transferrin receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99500401-3	chr15	99499908	99500908	+	746.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038658, intron 11 of 11)	intron (NM_001038658, intron 11 of 11)	-25678.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	0.0	0.5	1.0	0.0	0.5	2.0
Merged-chr19-10376860-3	chr19	10376359	10377359	+	746.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12231.0	NM_018801	54525.0	Mm.182654	NM_018801	ENSMUSG00000024743	Syt7	AI851541|B230112P13Rik	synaptotagmin VII	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99328516-3	chr5	99328011	99329011	+	746.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	MTE2a|LTR|ERVL-MaLR	-75584.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	1.0	0.0	2.5	1.5	0.0	0.5
Merged-chr5-143529155-2	chr5	143528655	143529655	+	746.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1124.0	NM_001347530	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105294171-2	chr8	105293671	105294671	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357379, intron 3 of 12)	B3|SINE|B2	1942.0	NM_001357379	277978.0	Mm.40228	NM_177788	ENSMUSG00000043251	Exoc3l	C730015A04Rik|Exoc3l1	exocyst complex component 3-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145301222-1	chr6	145300722	145301722	+	746.0	f1_c57bl6.idr	Intergenic	Intergenic	50670.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	3.0	8.0	17.0	7.5	0.0	6.0
Merged-chr1-132343396-2	chr1	132342896	132343896	+	746.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24552.0	NM_001311108	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	5.5	35.5	15.0	1.0	1.0	0.5
Merged-chr8-85066094-1	chr8	85065594	85066594	+	746.0	f1_balb.idr	exon (NM_026791, exon 7 of 10)	exon (NM_026791, exon 7 of 10)	1888.0	NM_001195531	100503710.0	Mm.440240	NM_001195531	ENSMUSG00000095845	Gm5741	EG436049	predicted gene 5741	protein-coding	0.0	0.5	0.0	0.0	1.0	0.0
Merged-chr10-59235795-1	chr10	59235295	59236295	+	746.0	f0_c57.idr	Intergenic	Intergenic	13873.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75030717-1	chr8	75030217	75031217	+	746.0	f0_balb.idr	3' UTR (NM_001316753, exon 12 of 12)	3' UTR (NM_001316753, exon 12 of 12)	-2969.0	NM_001136259	21968.0	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49860255-2	chr16	49859755	49860755	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 1 of 9)	intron (NM_010581, intron 1 of 9)	4601.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-103346301-2	chr12	103345801	103346801	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 1 of 9)	(TCCA)n|Simple_repeat|Simple_repeat	9700.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44072319-3	chr7	44071818	44072818	+	746.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20028.0	NM_020268	16619.0	Mm.445911	NM_020268	ENSMUSG00000063177	Klk1b27	Gk27|Klk21l|Klk27|mGK-27	kallikrein 1-related peptidase b27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-14119582-1	chr14	14119082	14120082	+	746.0	f1_c57bl6.idr	intron (NM_025550, intron 2 of 7)	B3A|SINE|B2	1322.0	NM_025550	66413.0	Mm.27591	NM_025550	ENSMUSG00000021737	Psmd6	2400006A19Rik	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	protein-coding	2.0	1.0	0.5	8.5	0.0	0.0
Merged-chr16-22013204-2	chr16	22012704	22013704	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027488, intron 2 of 16)	intron (NR_027488, intron 2 of 16)	3720.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77915950-2	chr9	77915450	77916450	+	746.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1415.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20696322-2	chr9	20695822	20696822	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357639, intron 1 of 5)	MIRb|SINE|MIR	30681.0	NM_001357635	244723.0	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153806997-2	chr1	153806497	153807497	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243223, intron 11 of 20)	intron (NM_001243223, intron 11 of 20)	37144.0	NM_001243223	240816.0	Mm.329340	NM_001243223	ENSMUSG00000042641	Rgsl1	4930415K13Rik|Gm202|Rgsl2	regulator of G-protein signaling like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100398843-2	chr12	100398343	100399343	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 9 of 19)	intron (NM_001033213, intron 9 of 19)	121979.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-118296019-1	chr4	118295519	118296519	+	746.0	f0_balb.idr	Intergenic	Intergenic	-4622.0	NM_011213	19268.0	Mm.29855	NM_011213	ENSMUSG00000033295	Ptprf	AA591035|LAR|LARS|RPTP-LAR	protein tyrosine phosphatase, receptor type, F	protein-coding	0.0	0.0	0.0	4.0	0.0	0.0
Merged-chr2-46185414-3	chr2	46184912	46185912	+	746.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	488807.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27367704-1	chr14	27367204	27368204	+	746.0	f0_c57.idr	intron (NM_027871, intron 3 of 10)	intron (NM_027871, intron 3 of 10)	6315.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	2.0	43.0	15.5	12.0	9.5	10.5
Merged-chr18-20740308-3	chr18	20739819	20740819	+	746.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	6085.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43782210-2	chr7	43781710	43782710	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133712, intron 2 of 5)	intron (NM_133712, intron 2 of 5)	1156.0	NM_133712	69540.0	Mm.46421	NM_133712	ENSMUSG00000030693	Klk10	2300002A13Rik|NES1|PRSSL1	kallikrein related-peptidase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87591206-3	chr11	87590695	87591695	+	746.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357901)	promoter-TSS (NM_001357901)	-971.0	NM_001357901	170749.0	Mm.399376	NM_133215	ENSMUSG00000018401	Mtmr4	AA596759|ESTM44|FYVE-DSP2|ZFYVE11|mKIAA0647	myotubularin related protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-3008508-1	chr3	3008008	3009008	+	746.0	f1_balb.idr	Intergenic	Intergenic	-499522.0	NM_013920	30942.0	Mm.330897	NM_013920	ENSMUSG00000017688	Hnf4g	NR2A2	hepatocyte nuclear factor 4, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165916631-2	chr2	165916135	165917135	+	746.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-31797.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	5.5	25.0	11.5	19.5	29.0	16.5
Merged-chr6-115712334-3	chr6	115711830	115712830	+	746.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35695.0	NM_029780	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-101529415-1	chr14	101528915	101529915	+	746.0	f0_balb.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	79776.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11004496-2	chr4	11003996	11004996	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175175, intron 1 of 1)	intron (NM_175175, intron 1 of 1)	3123.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	13.5	3.5	17.5	1.5	5.0	6.5
Merged-chr3-9885748-1	chr3	9885248	9886248	+	746.0	f1_balb.idr	Intergenic	Intergenic	-52069.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	85.5	138.0	144.5	20.5	89.5	66.5
Merged-chr15-50833925-2	chr15	50833425	50834425	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 2 of 5)	intron (NM_001310481, intron 2 of 5)	55124.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	1.0	12.5	3.0	0.0	0.0	4.5
Merged-chr1-194978622-2	chr1	194978122	194979122	+	746.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1663.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-31151309-2	chr8	31150813	31151813	+	746.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001199988, exon 1 of 8)	exon (NM_001199988, exon 1 of 8)	997.0	NR_103719	234138.0	Mm.349800	NM_144927	ENSMUSG00000031577	Tti2	-	TELO2 interacting protein 2	protein-coding	11.0	13.0	11.5	6.5	14.0	9.5
Merged-chr14-54639625-2	chr14	54639125	54640125	+	746.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_199470, exon 2 of 12)	5' UTR (NM_199470, exon 2 of 12)	1739.0	NM_199470	239096.0	Mm.386871	NM_199470	ENSMUSG00000059674	Cdh24	1700040A22Rik	cadherin-like 24	protein-coding	0.0	2.0	1.5	0.0	0.0	1.0
Merged-chr1-171068083-1	chr1	171067583	171068583	+	746.0	f1_c57bl6.idr	Intergenic	Intergenic	-3431.0	NR_106103	102466998.0		NR_106103	ENSMUSG00000099119	Mir6546	Gm27408|mmu-mir-6546	microRNA 6546	ncRNA	1.0	0.0	0.0	0.5	0.5	0.5
Merged-chr5-65567894-2	chr5	65567394	65568394	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310619, intron 2 of 5)	intron (NM_001310619, intron 2 of 5)	30649.0	NM_001310619	53323.0	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91729663-2	chr2	91729163	91730163	+	746.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172669)	promoter-TSS (NM_172669)	-475.0	NM_172669	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	1.0	9.0	12.0	0.0	4.5	10.0
Merged-chr16-58732635-2	chr16	58732088	58733088	+	746.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_171826, exon 5 of 6)	exon (NM_171826, exon 5 of 6)	4678.0	NM_001252451	224250.0	Mm.29482	NM_171826	ENSMUSG00000022744	Cldnd1	1110019C08Rik|AA407103|AI849195|AW489850|Cldn25	claudin domain containing 1	protein-coding	4.0	0.0	1.0	3.5	2.0	0.0
Merged-chr5-43103219-1	chr5	43102719	43103719	+	746.0	f0_balb.idr	Intergenic	B4A|SINE|B4	-130244.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	2.0	12.5	3.5	10.5	3.5	7.0
Merged-chr17-35215197-2	chr17	35214697	35215697	+	746.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9846.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	10.0	24.5	12.5	4.0	21.5	15.0
Merged-chr3-142269353-2	chr3	142268853	142269853	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190854, intron 8 of 12)	intron (NM_001190854, intron 8 of 12)	-99928.0	NM_001277216	12167.0	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88539523-2	chr15	88539023	88540023	+	746.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-60779.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-136916814-2	chr2	136916314	136917314	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355671, intron 2 of 6)	intron (NM_001355671, intron 2 of 6)	17463.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26914862-2	chr2	26914362	26915362	+	746.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013677, exon 5 of 9)	exon (NM_013677, exon 5 of 9)	-1559.0	NM_013678	20931.0	Mm.389260	NM_013678	ENSMUSG00000014873	Surf2	Surf-2	surfeit gene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-138444467-2	chr3	138443967	138444967	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007410, intron 1 of 8)	B3A|SINE|B2	1374.0	NM_007410	11532.0	Mm.3874	NM_007410	ENSMUSG00000028138	Adh5	Adh-5|Adh3|GSNOR	alcohol dehydrogenase 5 (class III), chi polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37253309-3	chr9	37252859	37253859	+	746.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145960, intron 1 of 18)	(A)n|Simple_repeat|Simple_repeat	2379.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13232767-1	chr16	13232267	13233267	+	746.0	f0_balb.idr	Intergenic	MIRc|SINE|MIR	-23714.0	NM_001122667	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103019527-5	chr3	103019036	103020036	+	746.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-1010.0	NM_001310693	229663.0	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	34.5	37.5	22.0	25.5	43.5	16.5
Merged-chr4-136119286-1	chr4	136118786	136119786	+	746.0	f1_balb.idr	Intergenic	Intergenic	-24536.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	7.0	23.5	5.0	4.0	24.5	13.5
Merged-chr6-113629374-2	chr6	113628874	113629874	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009507, intron 2 of 2)	intron (NM_009507, intron 2 of 2)	5353.0	NM_009507	22346.0	Mm.29407	NM_009507	ENSMUSG00000033933	Vhl	Vhlh	von Hippel-Lindau tumor suppressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146777725-1	chr5	146777225	146778225	+	746.0	f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	B1_Mur2|SINE|Alu	17231.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	8.0	25.0	30.0	16.0	23.5	27.0
Merged-chr19-5406000-2	chr19	5405500	5406500	+	746.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015545)	promoter-TSS (NR_015545)	-815.0	NR_015545	74931.0	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	3.0	1.5	0.5	7.0	1.0	0.0
Merged-chr11-104311923-2	chr11	104311423	104312423	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285454, intron 6 of 9)	intron (NM_001285454, intron 6 of 9)	80487.0	NM_001285454	17762.0	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100203678-2	chr15	100203178	100204178	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172819, intron 27 of 32)	RLTR11C_MM|LTR|ERVK	-15642.0	NR_037311	100499528.0		NR_037311	ENSMUSG00000092752	Mir3473a	Mir3473|mir-3473a|mmu-mir-3473|mmu-mir-3473a	microRNA 3473a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21211037-2	chr5	21210537	21211537	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 5 of 26)	intron (NR_153365, intron 5 of 26)	24770.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27553906-2	chr7	27553406	27554406	+	746.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011116)	promoter-TSS (NM_011116)	616.0	NM_175107	66367.0	Mm.29831	NM_175107	ENSMUSG00000049643	2310022A10Rik	-	RIKEN cDNA 2310022A10 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-113659269-2	chr9	113658769	113659769	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164678, intron 15 of 17)	RLTR17B_Mm|LTR|ERVK	48990.0	NM_001164678	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32173107-3	chr18	32172621	32173621	+	746.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011946, intron 1 of 16)	intron (NM_011946, intron 1 of 16)	10032.0	NM_011946	26405.0	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-96616014-3	chr12	96615513	96616513	+	745.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-568791.0	NR_103800	69423.0	Mm.46121	NM_027076		1700019M22Rik	-	NFX-like protein	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52957911-3	chr6	52957406	52958406	+	745.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 1 of 4)	LTR41B|LTR|ERVL	-48286.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-85646417-6	chr15	85645948	85646948	+	745.8944700000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57325.0	NR_110483	102800312.0	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	17.5	25.5	22.5	27.5	21.5	19.5
Merged-chr11-48859223-4	chr11	48858703	48859703	+	745.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12217.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167498870-2	chr2	167498370	167499370	+	745.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_030743, intron 1 of 7)	intron (NM_030743, intron 1 of 7)	-4573.0	NR_153838	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-106692380-2	chr14	106691889	106692889	+	745.833374	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-205869.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	15.5	1.0	0.0	0.0	2.0	8.5
Merged-chr17-45571506-2	chr17	45570908	45571908	+	745.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008302, intron 3 of 10)	intron (NM_008302, intron 3 of 10)	1853.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	17.5	38.0	28.0	22.0	44.5	24.0
Merged-chr1-46087258-2	chr1	46086761	46087761	+	745.833374	f0_balb.idr|f0_c57.idr	intron (NM_001160386, intron 6 of 65)	intron (NM_001160386, intron 6 of 65)	20523.0	NM_001160386	227058.0	Mm.296880	NM_001160386	ENSMUSG00000041144	Dnah7b	Dnahc7b|Gm107	dynein, axonemal, heavy chain 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44130278-3	chr9	44129788	44130788	+	745.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152189, intron 1 of 1)	CpG	4197.0	NR_152189	100038560.0	Mm.429758	NR_152189		Gm10687	-	predicted gene 10687	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81518700-3	chr10	81518205	81519205	+	745.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010304, intron 1 of 6)	B3|SINE|B2	5520.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98688838-3	chr7	98688343	98689343	+	745.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_144495, exon 1 of 1)	non-coding (NR_144495, exon 1 of 1)	14085.0	NR_144495	100040769.0	Mm.126401	NR_144495		Gm15506	-	predicted gene 15506	ncRNA	10.5	5.5	0.0	0.0	1.0	0.5
Merged-chr2-129472115-3	chr2	129471615	129472615	+	745.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177653, intron 3 of 6)	intron (NM_177653, intron 3 of 6)	64487.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	0.5	6.0	12.5	15.0	3.0	1.0
Merged-chr16-95825922-3	chr16	95825435	95826435	+	745.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72778.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111544956-3	chr10	111544404	111545404	+	745.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	38618.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80706963-2	chr10	80706463	80707463	+	745.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007460)	TTS (NM_007460)	4270.0	NM_027829	71564.0	Mm.35802	NM_027829	ENSMUSG00000055862	Izumo4	9030607L17Rik|AI550407	IZUMO family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76267021-2	chr12	76266521	76267521	+	745.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_138745, intron 1 of 27)	intron (NM_138745, intron 1 of 27)	11789.0	NM_138745	108156.0	Mm.29584	NM_138745	ENSMUSG00000021048	Mthfd1	Dcs|E430024A07Rik|Mthfd	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-91357711-4	chr8	91357244	91358244	+	745.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011936, intron 1 of 8)	intron (NM_011936, intron 1 of 8)	44219.0	NM_011936	26383.0	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	0.5	8.0	4.0	0.5	3.5	3.5
Merged-chr1-43899292-2	chr1	43898792	43899792	+	745.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34702.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6314213-3	chr17	6313710	6314710	+	745.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166629, intron 2 of 4)	B2_Mm1t|SINE|B2	3264.0	NM_001166629	100310872.0	Mm.381893	NM_001166629	ENSMUSG00000092074	Dynlt1a	-	dynein light chain Tctex-type 1A	protein-coding	2.5	4.0	1.0	0.0	0.5	0.0
Merged-chr17-17895123-2	chr17	17894623	17895623	+	745.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7299.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	14.0	20.0	8.0	16.5	12.0	13.0
Merged-chr18-65924860-2	chr18	65924360	65925360	+	745.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14229.0	NM_013833	19434.0	Mm.431047	NM_013833	ENSMUSG00000024518	Rax	7530406A22Rik|E130303K03Rik|Rx|ey-1|ey1	retina and anterior neural fold homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21539233-2	chr9	21538733	21539733	+	745.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198794, intron 4 of 6)	intron (NM_001198794, intron 4 of 6)	-7661.0	NM_021531	59035.0	Mm.178115	NM_021531	ENSMUSG00000032185	Carm1	Prmt4	coactivator-associated arginine methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123866653-4	chr5	123866156	123867156	+	745.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1140.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	18.0	17.5	20.0	11.0	17.5	11.5
Merged-chr12-8771447-8	chr12	8771012	8772012	+	745.739563	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011519, exon 1 of 5)	5' UTR (NM_011519, exon 1 of 5)	116.0	NM_011519	20969.0	Mm.2580	NM_011519	ENSMUSG00000020592	Sdc1	AA408134|AA409076|CD138|Sstn|Synd|Synd1|syn-1	syndecan 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4297337-4	chr7	4296845	4297845	+	745.729187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23156.0	NM_008848	18729.0	Mm.326531	NM_008848		Pira6	12M1|Pira10|p91B	paired-Ig-like receptor A6	protein-coding	0.0	13.0	2.5	2.5	3.5	3.0
Merged-chr8-124827637-3	chr8	124827140	124828140	+	745.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198632, intron 8 of 9)	intron (NM_198632, intron 8 of 9)	34621.0	NM_198632	330863.0	Mm.422769	NM_198632	ENSMUSG00000036913	Trim67	D130049O21Rik|TNL	tripartite motif-containing 67	protein-coding	5.0	1.5	3.0	0.0	2.0	4.5
Merged-chr2-27024789-2	chr2	27024289	27025289	+	745.700012	f1_balb.idr|f1_c57bl6.idr	exon (NM_172659, exon 5 of 10)	exon (NM_172659, exon 5 of 10)	3209.0	NM_172659	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64505453-4	chr5	64504948	64505948	+	745.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28440.0	NR_045413	77382.0	Mm.366742	NR_045411	ENSMUSG00000105352	C030018K13Rik	-	RIKEN cDNA C030018K13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-21909698-3	chr2	21909220	21910220	+	745.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-317783.0	NM_148413	667663.0	Mm.330033	NM_148413	ENSMUSG00000025716	Myo3a	9030416P08Rik	myosin IIIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57333751-2	chr17	57333251	57334251	+	745.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24935.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-117845161-3	chr12	117844682	117845682	+	745.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146040, intron 1 of 9)	ID_B1|SINE|B4	1321.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	7.5	17.0	9.0	9.5	0.0	1.5
Merged-chr12-32911052-3	chr12	32910545	32911545	+	745.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	42744.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43327318-3	chr1	43326810	43327810	+	745.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	-118441.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117139334-4	chr11	117138874	117139874	+	745.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 2 of 16)	intron (NM_001166507, intron 2 of 16)	24202.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132765795-3	chr7	132765308	132766308	+	745.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347630, intron 2 of 3)	intron (NM_001347630, intron 2 of 3)	11108.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100024750-2	chr12	100024250	100025250	+	745.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	60251.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-3020781-2	chr9	3020283	3021283	+	745.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	17960.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-36957475-2	chr14	36956975	36957975	+	745.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_027045, intron 1 of 10)	MER21B|LTR|ERVL	11289.0	NM_027045	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70520142-2	chr14	70519642	70520642	+	745.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011359)	TTS (NM_011359)	118.0	NM_009755	12153.0	Mm.27757	NM_009755	ENSMUSG00000022098	Bmp1	Pcp|Tld	bone morphogenetic protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156189429-3	chr2	156188910	156189910	+	745.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7237.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	87.5	228.0	156.5	96.0	203.0	148.5
Merged-chr10-83359057-3	chr10	83358544	83359544	+	745.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-1177.0	NM_026579	28109.0	Mm.196210	NM_026579	ENSMUSG00000020255	D10Wsu102e	AI747614|C430041I18Rik	DNA segment, Chr 10, Wayne State University 102, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156532953-4	chr1	156532391	156533391	+	745.535706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-25896.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	34.5	96.5	62.0	41.5	57.0	46.0
Merged-chr3-88482501-2	chr3	88482001	88483001	+	745.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019390)	TTS (NM_019390)	10811.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-15847432-2	chr3	15846942	15847942	+	745.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001173459, intron 1 of 5)	Lx2|LINE|L1	1045.0	NM_001173459	100038947.0	Mm.330924	NM_001173459	ENSMUSG00000074677	LOC100038947	-	signal-regulatory protein beta 1-like	protein-coding	7.0	5.5	10.5	6.0	8.5	3.5
Merged-chr4-43435472-2	chr4	43434972	43435972	+	745.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6338.0	NM_001162381	329831.0	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45059829-2	chr19	45059329	45060329	+	745.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25A|LTR|ERVK	12253.0	NM_001362381	94280.0	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51590386-2	chr10	51589886	51590886	+	745.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029894)	promoter-TSS (NM_029894)	74.0	NM_029894	77296.0	Mm.30588	NM_029894	ENSMUSG00000019909	Fam162b	9430073N08Rik	family with sequence similarity 162, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-68502415-3	chr2	68501932	68502932	+	745.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-30451.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-68257126-2	chr15	68256626	68257626	+	745.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152182, intron 1 of 13)	intron (NR_152182, intron 1 of 13)	1730.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	9.0	2.0	1.5	3.5	4.0	10.5
Merged-chr18-61121820-2	chr18	61121320	61122320	+	745.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 11 of 21)	L2b|LINE|L2	4352.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113370547-2	chr6	113370047	113371047	+	745.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133932, intron 7 of 8)	intron (NM_133932, intron 7 of 8)	6973.0	NM_133932	101206.0	Mm.266811	NM_133932	ENSMUSG00000048930	Tada3	1110004B19Rik|ADA3|AI987856|Tada3l	transcriptional adaptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3946887-2	chr19	3946387	3947387	+	745.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019449, intron 9 of 10)	intron (NM_019449, intron 9 of 10)	11701.0	NM_001161428	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-21988789-2	chr3	21988289	21989289	+	745.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87863.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4094082-2	chr19	4093582	4094582	+	745.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-3269.0	NM_026373	52004.0	Mm.29609	NM_026373	ENSMUSG00000024856	Cdk2ap2	5830466O21Rik|D19Ertd144e|Doc-1r	CDK2-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15827262-2	chr17	15826762	15827762	+	745.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178615)	promoter-TSS (NM_178615)	-676.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	3.0	15.5	4.5	3.0	15.5	4.5
Merged-chr9-107742492-2	chr9	107741992	107742992	+	745.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_148930, exon 24 of 25)	exon (NM_148930, exon 24 of 25)	28510.0	NM_148930	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	8.0	1.0	1.0	2.5	0.0	0.0
Merged-chr7-102433135-2	chr7	102432635	102433635	+	745.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009287, intron 11 of 11)	intron (NM_009287, intron 11 of 11)	-8560.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-78624236-2	chr14	78623736	78624736	+	745.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081336, intron 8 of 29)	intron (NM_001081336, intron 8 of 29)	5054.0	NM_001253766	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.0	2.5	1.5	0.0	2.5	1.0
Merged-chr6-72126439-2	chr6	72125939	72126939	+	745.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	-3242.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78573930-2	chr10	78573430	78574430	+	745.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173751)	promoter-TSS (NM_173751)	-570.0	NM_173751	216136.0	Mm.2644	NM_173751	ENSMUSG00000032763	Ilvbl	5830463I21|AI415009	ilvB (bacterial acetolactate synthase)-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104336588-2	chr8	104336088	104337088	+	745.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-4006.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30970909-2	chr7	30970409	30971409	+	745.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164184, intron 2 of 8)	ZP3AR|Satellite|Satellite	2560.0	NM_001164185	54135.0	Mm.4067	NM_017405	ENSMUSG00000001247	Lsr	ILDR3|Lisch7	lipolysis stimulated lipoprotein receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54313603-1	chr6	54313103	54314103	+	745.5	f1_c57bl6.idr	intron (NR_033635, intron 4 of 13)	intron (NR_033635, intron 4 of 13)	-13409.0	NM_030024	78004.0	Mm.41984	NM_030024	ENSMUSG00000045725	Prr15	E130201N16Rik|G90	proline rich 15	protein-coding	6.0	11.0	7.0	7.0	7.5	10.0
Merged-chr3-52199164-3	chr3	52198670	52199670	+	745.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69167.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-25735597-2	chr1	25735097	25736097	+	745.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175642, intron 2 of 30)	L1_Mur2|LINE|L1	94110.0	NM_175642	210933.0	Mm.336569	NM_175642	ENSMUSG00000033569	Adgrb3	A830096D10Rik|Bai3	adhesion G protein-coupled receptor B3	protein-coding	0.0	0.0	1.5	0.0	0.0	0.5
Merged-chr6-91489873-2	chr6	91489373	91490373	+	745.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009531, exon 16 of 16)	3' UTR (NM_009531, exon 16 of 16)	16122.0	NM_028766	74122.0	Mm.38801	NM_028766	ENSMUSG00000030095	Tmem43	1200015A22Rik|LUMA	transmembrane protein 43	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96239082-1	chr10	96238582	96239582	+	745.5	f0_balb.idr	intron (NR_110448, intron 1 of 2)	intron (NR_110448, intron 1 of 2)	12875.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10511981-2	chr19	10511481	10512481	+	745.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025333, intron 3 of 3)	URR1A|DNA|hAT-Charlie	13228.0	NM_025333	66072.0	Mm.180063	NM_025333	ENSMUSG00000024668	Sdhaf2	0610038F07Rik|AA407634|AW049997	succinate dehydrogenase complex assembly factor 2	protein-coding	21.5	84.5	67.0	31.0	43.5	33.0
Merged-chr19-41267624-2	chr19	41267124	41268124	+	745.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3620.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138271834-2	chr1	138271334	138272334	+	745.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1904.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-148830796-2	chr6	148830296	148831296	+	745.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081113, intron 1 of 24)	intron (NM_001081113, intron 1 of 24)	671.0	NM_001081113	320727.0	Mm.260105	NM_001081113	ENSMUSG00000040029	Ipo8	6230418K12Rik|Abcc10|C130009K11Rik|MRP7|OM-1|Om1|Ranbp8	importin 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99416144-2	chr12	99415644	99416644	+	745.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 1 of 5)	intron (NM_183186, intron 1 of 5)	33930.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-13305541-2	chr18	13305041	13306041	+	745.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	298551.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90507756-2	chr2	90507256	90508256	+	745.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-28582.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116533105-4	chr11	116532632	116533632	+	745.483337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025367)	promoter-TSS (NM_025367)	-106.0	NM_025367	20698.0	Mm.20944	NM_011451	ENSMUSG00000061878	Sphk1	1110006G24Rik|Sk1|Spk1	sphingosine kinase 1	protein-coding	0.0	0.0	0.5	0.0	0.0	4.0
Merged-chr8-26723318-3	chr8	26722818	26723818	+	745.466675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	101105.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr15-66084083-3	chr15	66083580	66084580	+	745.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152923, intron 1 of 14)	intron (NM_152923, intron 1 of 14)	-107276.0	NM_001145096	654498.0	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-105642040-3	chr7	105641420	105642420	+	745.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360053)	TTS (NM_001360053)	1475.0	NM_001360054	14356.0	Mm.220330	NM_019502	ENSMUSG00000089847	Timm10b	Fxc1|Tim10b|Tim9b	translocase of inner mitochondrial membrane 10B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-132085991-3	chr3	132085522	132086522	+	745.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_020265, exon 1 of 4)	5' UTR (NM_020265, exon 1 of 4)	730.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0.0	6.0	0.0	0.0	6.0	0.0
Merged-chr7-99974777-3	chr7	99974274	99975274	+	745.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175388, intron 1 of 5)	intron (NM_175388, intron 1 of 5)	5684.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-91301554-4	chr15	91301033	91302033	+	745.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033633, intron 7 of 9)	B3|SINE|B2	-109526.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71437219-5	chr6	71436719	71437719	+	745.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355745, intron 1 of 9)	intron (NM_001355745, intron 1 of 9)	3418.0	NM_001355745	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60805551-3	chr2	60805067	60806067	+	745.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	75871.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99074375-2	chr15	99073875	99074875	+	745.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030159)	promoter-TSS (NM_030159)	294.0	NR_155351	102637490.0	Mm.421289	NR_155351	ENSMUSG00000116371	Gm34284	-	predicted gene, 34284	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104252677-3	chr9	104252166	104253166	+	745.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 1 of 56)	Tigger7|DNA|TcMar-Tigger	10264.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100107498-2	chr12	100106998	100107998	+	745.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4833.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-58502104-4	chr3	58501615	58502615	+	745.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23706.0	NM_001005509	229317.0	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	17.0	18.0	13.0	11.5	13.5	18.0
Merged-chr7-120823428-3	chr7	120822924	120823924	+	745.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19407.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-118448407-3	chr1	118447904	118448904	+	745.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359330, intron 2 of 39)	intron (NM_001359330, intron 2 of 39)	10861.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-17773101-3	chr14	17772588	17773588	+	745.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 1 of 9)	intron (NM_001113417, intron 1 of 9)	112128.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-10990971-3	chr8	10990467	10991467	+	745.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081212, intron 1 of 1)	intron (NM_001081212, intron 1 of 1)	-16883.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84533369-1	chr1	84532869	84533869	+	745.333313	f0_balb.idr	intron (NM_152915, intron 5 of 12)	intron (NM_152915, intron 5 of 12)	-162470.0	NR_039588	100628595.0		NR_039588	ENSMUSG00000093254	Mir5126	mir-5126|mmu-mir-5126|mu-mir-5126	microRNA 5126	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181529289-3	chr2	181528800	181529800	+	745.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271584, intron 2 of 5)	intron (NM_001271584, intron 2 of 5)	8815.0	NM_001271584	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135136664-3	chr1	135136161	135137161	+	745.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177081, intron 5 of 9)	intron (NM_177081, intron 5 of 9)	3352.0	NM_001356382	320139.0	Mm.258388	NM_177081	ENSMUSG00000031506	Ptpn7	BPTP-4|C920001D21Rik|HEPTP|LC-PTP|LPTP	protein tyrosine phosphatase, non-receptor type 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160603452-3	chr2	160602922	160603922	+	745.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42475.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118799341-2	chr9	118798841	118799841	+	745.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 3 of 13)	intron (NM_001113514, intron 3 of 13)	87649.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-84823012-2	chr11	84822512	84823512	+	745.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_177564, intron 3 of 6)	intron (NM_177564, intron 3 of 6)	-3497.0	NM_145433	217038.0	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik	mitochondrial rRNA methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57654846-2	chr9	57654346	57655346	+	745.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-1215.0	NM_001304761	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77490064-2	chr11	77489529	77490529	+	745.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172945)	promoter-TSS (NM_172945)	-351.0	NM_172945	268445.0	Mm.39296	NM_172945	ENSMUSG00000037907	Ankrd13b	AW124583|B930093C12Rik	ankyrin repeat domain 13b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94559499-3	chr16	94558964	94559964	+	745.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10742.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-42468067-2	chr18	42467567	42468567	+	745.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43420.0	NM_001039474	56070.0	Mm.270511	NM_001039474	ENSMUSG00000024498	Tcerg1	2410022J09Rik|2900090C16Rik|AI428505|CA150b|FBP23|FBP28|Taf2s|ca150|p144	transcription elongation regulator 1 (CA150)	protein-coding	0.0	3.5	0.5	0.0	0.0	0.0
Merged-chr5-37971903-3	chr5	37971406	37972406	+	745.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-67324.0	NM_001289536	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	3.0	3.0	0.5	3.0	8.5	0.5
Merged-chr12-73685431-3	chr12	73684930	73685930	+	745.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	100634.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88865090-3	chr15	88864538	88865538	+	745.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145478, exon 6 of 6)	3' UTR (NM_145478, exon 6 of 6)	2844.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-69300701-4	chr18	69300216	69301216	+	745.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43776.0	NM_013685	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	2.5	9.0	6.5	8.5	13.0	22.5
Merged-chr1-132264818-3	chr1	132264324	132265324	+	745.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-33802.0	NM_144810	213417.0	Mm.39723	NM_144810	ENSMUSG00000042115	Klhdc8a	A630065K24Rik	kelch domain containing 8A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45183981-2	chr9	45183481	45184481	+	745.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_145403, intron 4 of 12)	intron (NM_145403, intron 4 of 12)	-11785.0	NM_001198971	408059.0	Mm.249297	NM_001198971	ENSMUSG00000091996	BC049352	SMIM35	cDNA sequence BC049352	protein-coding	0.0	1.5	0.5	5.5	2.5	1.5
Merged-chr1-74807886-2	chr1	74807386	74808386	+	745.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15867.0	NM_009518	22409.0	Mm.5130	NM_009518	ENSMUSG00000026167	Wnt10a	-	wingless-type MMTV integration site family, member 10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-17746683-3	chr14	17746161	17747161	+	745.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 1 of 9)	L1MB8|LINE|L1	85701.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98836077-2	chr11	98835577	98836577	+	745.166687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080925)	promoter-TSS (NM_001080925)	-708.0	NM_001080925	268480.0	Mm.340766	NM_001080925	ENSMUSG00000038020	Rapgefl1	B230105J10	Rap guanine nucleotide exchange factor (GEF)-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126780776-4	chr7	126780216	126781216	+	745.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011538)	promoter-TSS (NM_011538)	-767.0	NM_011538	21389.0	Mm.727	NM_011538	ENSMUSG00000030699	Tbx6	rv	T-box 6	protein-coding	0.0	5.0	0.5	3.0	10.0	0.0
Merged-chr13-9184100-2	chr13	9183600	9184600	+	745.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR27|LTR|ERVK	90219.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118810173-2	chr10	118809673	118810673	+	745.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	58730.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-144990862-2	chr7	144990342	144991342	+	745.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-50917.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	8.5	20.0	17.5	19.0	22.5	5.5
Merged-chr5-31217792-2	chr5	31217290	31218290	+	745.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008014, intron 1 of 9)	intron (NM_008014, intron 1 of 9)	2755.0	NM_008014	14208.0	Mm.14501	NM_008014	ENSMUSG00000029147	Ppm1g	AI385652|Fin13	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	protein-coding	7.0	5.0	11.5	1.5	2.0	2.5
Merged-chr8-120491392-2	chr8	120490892	120491892	+	745.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	2526.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88345583-2	chr17	88345087	88346087	+	745.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95117.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	7.0	10.5	1.0	5.0	21.0	10.5
Merged-chr9-118761699-2	chr9	118761199	118762199	+	745.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	MTEa|LTR|ERVL-MaLR	50007.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	1.0	7.0	2.5	3.5	4.0	4.5
Merged-chr19-55814636-3	chr19	55814135	55815135	+	745.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	72825.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	2.0	2.0	1.0	2.0	0.0
Merged-chr14-8109157-3	chr14	8108673	8109673	+	745.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	RMER15|LTR|ERVL	10962.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95871366-3	chr4	95870863	95871863	+	745.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113412, intron 14 of 15)	intron (NM_001113412, intron 14 of 15)	95672.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145553434-3	chr6	145552945	145553945	+	745.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62518.0	NM_009449	22147.0	Mm.270295	NM_009449	ENSMUSG00000067338	Tuba3b	M[a]7|Tuba7	tubulin, alpha 3B	protein-coding	0.0	2.0	0.0	0.0	0.0	0.0
Merged-chr7-98602014-4	chr7	98601577	98602577	+	745.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172280, intron 15 of 19)	intron (NM_172280, intron 15 of 19)	54492.0	NM_172280	233545.0	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	2.0	0.0	1.0	2.0	0.0	1.5
Merged-chr1-173739712-4	chr1	173739223	173740223	+	745.041687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204910, intron 1 of 7)	intron (NM_001204910, intron 1 of 7)	2086.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	124.5	336.5	169.0	100.5	264.0	157.5
Merged-chr11-88991263-1	chr11	88990763	88991763	+	745.0	f1_c57bl6.idr	3' UTR (NM_016706, exon 7 of 7)	3' UTR (NM_016706, exon 7 of 7)	-8140.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	0.0	0.5	2.0	4.0	0.5	4.5
Merged-chr16-3232655-2	chr16	3232133	3233133	+	745.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-359765.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145122315-1	chr2	145121815	145122815	+	745.0	f0_balb.idr	Intergenic	IAPEz-int|LTR|ERVK	-45460.0	NM_001356497	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132271526-2	chr4	132271026	132272026	+	745.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1340.0	NR_002865	353373.0	Mm.424675	NR_002865		Rnu11	MBII-407|Mirn801|mir-801|mmu-mir-801	U11 small nuclear RNA	snRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65536387-2	chr17	65535887	65536887	+	745.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008973, intron 1 of 14)	intron (NM_001008973, intron 1 of 14)	4395.0	NM_001008973	381107.0	Mm.141275	NM_001008973	ENSMUSG00000045036	Tmem232	E130009J12Rik|Gm940|Tes13-L|Tes13-S	transmembrane protein 232	protein-coding	3.5	0.0	0.0	7.5	3.0	3.0
Merged-chr1-178393151-2	chr1	178392651	178393651	+	745.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-12867.0	NM_026626	68226.0	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3855165-2	chr19	3854665	3855665	+	745.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271496, intron 1 of 11)	intron (NM_001271496, intron 1 of 11)	3392.0	NR_073190	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94343862-2	chr11	94343342	94344342	+	745.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 30 of 30)	intron (NM_029600, intron 30 of 30)	15841.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0.0	0.5	1.0	0.0	3.5	0.5
Merged-chr1-133025923-1	chr1	133025423	133026423	+	745.0	f0_balb.idr	promoter-TSS (NM_001302803)	promoter-TSS (NM_001302803)	-507.0	NM_001302801	17248.0	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	56.5	124.5	77.0	56.5	132.5	61.0
Merged-chr12-70822833-2	chr12	70822333	70823333	+	745.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2681.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34282518-1	chr17	34282018	34283018	+	745.0	f1_balb.idr	TTS (NM_010378)	TTS (NM_010378)	5253.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	29.5	38.5	7.5	8.5	2.0	7.0
Merged-chr5-99327732-1	chr5	99327232	99328232	+	745.0	f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	B3|SINE|B2	-74805.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	42.5	81.5	52.5	45.5	124.5	61.5
Merged-chr1-64078998-2	chr1	64078498	64079498	+	745.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_033563, exon 2 of 4)	exon (NM_033563, exon 2 of 4)	-36497.0	NR_105864	102466760.0		NR_105864	ENSMUSG00000098487	Mir6899	Gm27384|mmu-mir-6899	microRNA 6899	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-45424374-1	chr5	45423874	45424874	+	745.0	f1_c57bl6.idr	promoter-TSS (NR_131933)	promoter-TSS (NR_131933)	26.0	NR_131933	52401.0	Mm.33854	NR_131933	ENSMUSG00000029092	D5Ertd615e	4930435H24Rik	DNA segment, Chr 5, ERATO Doi 615, expressed	ncRNA	1.0	10.5	5.0	7.0	6.5	2.0
Merged-chr10-21188905-3	chr10	21188406	21189406	+	745.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_152786)	TTS (NR_152786)	1962.0	NR_152786	102636600.0	Mm.227606	NR_152786	ENSMUSG00000111005	Gm33619	-	predicted gene, 33619	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-162532165-1	chr1	162531665	162532665	+	745.0	f1_balb.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	16180.0	NM_144877	71449.0	Mm.270569	NM_144877	ENSMUSG00000026694	Mettl13	5630401D24Rik	methyltransferase like 13	protein-coding	1.5	6.5	3.0	3.0	0.0	7.0
Merged-chr1-43868517-3	chr1	43868046	43869046	+	745.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40838.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26699718-2	chr8	26699218	26700218	+	745.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	124705.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	172.5	260.0	191.0	121.5	177.0	136.5
Merged-chr13-79917387-2	chr13	79916887	79917887	+	745.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	-965997.0	NR_153410	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47961390-1	chr6	47960890	47961890	+	745.0	f1_c57bl6.idr	intron (NM_178898, intron 3 of 4)	AT_rich|Low_complexity|Low_complexity	8000.0	NM_178898	101197.0	Mm.241063	NM_178898	ENSMUSG00000045466	Zfp956	AI894139	zinc finger protein 956	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr18-46162042-1	chr18	46161542	46162542	+	745.0	f0_c57.idr	Intergenic	RLTR11A2|LTR|ERVK	36776.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	0.0	1.5	1.0	0.0	0.0	1.0
Merged-chr9-44605871-2	chr9	44605371	44606371	+	745.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357703, intron 1 of 13)	intron (NM_001357703, intron 1 of 13)	979.0	NM_181324	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-85590278-2	chr6	85589778	85590778	+	745.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145223, intron 1 of 22)	intron (NM_145223, intron 1 of 22)	2747.0	NM_145223	236266.0	Mm.246967	NM_145223	ENSMUSG00000063810	Alms1	bbb	ALMS1, centrosome and basal body associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63985866-2	chr9	63985366	63986366	+	745.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 3 of 3)	B3|SINE|B2	36193.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-40266067-1	chr1	40265567	40266567	+	745.0	f0_balb.idr	promoter-TSS (NM_001123382)	promoter-TSS (NM_001123382)	-519.0	NM_001123382	16177.0	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4239549-1	chr8	4239049	4240049	+	745.0	f1_c57bl6.idr	promoter-TSS (NM_001291778)	promoter-TSS (NM_001291778)	-556.0	NM_001291783	26400.0	Mm.3906	NM_011944	ENSMUSG00000002948	Map2k7	5930412N11Rik|JNKK 2|Jnkk2|MAPKK 7|MEK 7|Mapkk7|Mek7|Mkk7|Prkmk7|sek2	mitogen-activated protein kinase kinase 7	protein-coding	11.0	18.5	11.0	13.5	0.5	17.5
Merged-chr8-13779036-2	chr8	13778536	13779536	+	745.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027276, intron 16 of 17)	intron (NM_027276, intron 16 of 17)	-6579.0	NM_025924	67031.0	Mm.44858	NM_025924	ENSMUSG00000038398	Upf3a	2600001C03Rik|4930546M19Rik|RENT3A|UPF3	UPF3 regulator of nonsense transcripts homolog A (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4547810-2	chr16	4547310	4548310	+	745.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031182, intron 5 of 6)	B2_Mm2|SINE|B2	11910.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122394122-1	chr3	122393622	122394622	+	745.0	f0_balb.idr	Intergenic	Intergenic	-25635.0	NM_013867	29815.0	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	0.0	1.5	1.0	4.5	0.0	0.0
Merged-chr2-25706726-2	chr2	25706226	25707226	+	745.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023326)	promoter-TSS (NM_023326)	-153.0	NM_023326	107771.0	Mm.330057	NM_023326	ENSMUSG00000049086	Bmyc	2900002K07Rik|AW060705|Mycb	brain expressed myelocytomatosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25142547-2	chr15	25142047	25143047	+	745.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	271217.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55745052-3	chr14	55744550	55745550	+	745.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026403)	promoter-TSS (NM_026403)	634.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151708923-3	chr1	151708382	151709382	+	745.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 11 of 13)	MIR3|SINE|MIR	45845.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128779829-2	chr2	128779329	128780329	+	745.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008587, exon 13 of 19)	exon (NM_008587, exon 13 of 19)	-38474.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	1.0	3.0	3.5	4.5	6.5	7.0
Merged-chr9-70049975-3	chr9	70049473	70050473	+	745.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR37B|LTR|ERV1	-11885.0	NM_028087	72077.0	Mm.195555	NM_028087	ENSMUSG00000032226	Gcnt3	2010013H22Rik|2210021I22Rik|2210401J11Rik	glucosaminyl (N-acetyl) transferase 3, mucin type	protein-coding	0.0	1.0	4.0	0.0	3.0	6.0
Merged-chr7-44884391-1	chr7	44883891	44884891	+	745.0	f1_c57bl6.idr	intron (NM_001331206, intron 9 of 16)	intron (NM_001331206, intron 9 of 16)	8033.0	NM_001331208	75613.0	Mm.157778	NM_029365	ENSMUSG00000002968	Med25	2610034E13Rik|2610529E18Rik|ESTM2	mediator complex subunit 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116077888-1	chr6	116077388	116078388	+	745.0	f0_balb.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	-82883.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-11946519-2	chr18	11946019	11947019	+	745.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001146287)	TTS (NM_001146287)	-106081.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148133962-2	chr4	148133462	148134462	+	745.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305420, intron 1 of 9)	B3|SINE|B2	3042.0	NM_001305420	71890.0	Mm.9648	NM_027985	ENSMUSG00000029003	Mad2l2	2310033C13Rik|G1-453-4|MAD2B|REV7|repro22	MAD2 mitotic arrest deficient-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152688799-1	chr2	152688299	152689299	+	745.0	f1_balb.idr	TTS (NM_025543)	TTS (NM_025543)	1651.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	0.0	6.0	2.5	0.0	0.0	3.0
Merged-chr16-57915417-3	chr16	57914936	57915936	+	745.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-160699.0	NM_007739	12837.0	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97146962-2	chr11	97146462	97147462	+	745.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106094)	promoter-TSS (NR_106094)	-543.0	NR_106094	102466822.0		NR_106094	ENSMUSG00000099286	Mir7235	Gm27986|mmu-mir-7235	microRNA 7235	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55330483-2	chr13	55329990	55330990	+	745.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_016662)	promoter-TSS (NM_016662)	-760.0	NM_016662	17121.0	Mm.20350	NM_016662	ENSMUSG00000021485	Mxd3	4631412E13Rik|Mad3|bHLHc13	Max dimerization protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-110347888-2	chr14	110347388	110348388	+	745.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	407261.0	NM_175499	239250.0	Mm.49728	NM_175499	ENSMUSG00000045871	Slitrk6	4832410J21Rik|Sltk6	SLIT and NTRK-like family, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23998117-2	chr17	23997617	23998617	+	745.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133731)	promoter-TSS (NM_133731)	-17.0	NM_133731	70835.0	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	0.0	0.0	0.0	0.5	1.5	0.0
Merged-chr1-86502336-2	chr1	86501836	86502836	+	745.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24221.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36698812-2	chr18	36698312	36699312	+	745.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-2887.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	5.0	1.0	1.0	5.0	1.0	1.0
Merged-chr7-121070568-3	chr7	121070097	121071097	+	745.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030691, exon 2 of 6)	exon (NM_030691, exon 2 of 6)	3933.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-4873491-2	chr1	4872991	4873991	+	745.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159750, intron 2 of 9)	MTA_Mm|LTR|ERVL-MaLR	15163.0	NM_001159751	21399.0	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32293248-2	chr19	32292748	32293748	+	745.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 2 of 9)	intron (NM_144792, intron 2 of 9)	56068.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111735484-1	chr8	111734984	111735984	+	745.0	f1_balb.idr	intron (NM_009954, intron 1 of 6)	intron (NM_009954, intron 1 of 6)	-3348.0	NM_001198839	12927.0	Mm.3758	NM_009954	ENSMUSG00000031955	Bcar1	AI385681|Cas|Crkas	breast cancer anti-estrogen resistance 1	protein-coding	3.0	0.5	0.0	3.0	3.0	0.0
Merged-chr10-77624246-2	chr10	77623746	77624746	+	745.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019803, intron 1 of 5)	B4A|SINE|B4	1925.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-42550004-2	chr2	42549504	42550504	+	745.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053011, intron 1 of 90)	Lx8|LINE|L1	-102436.0	NR_105754	102465171.0		NR_105754	ENSMUSG00000098660	Mir6336	Gm27584|mmu-mir-6336	microRNA 6336	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95633968-2	chr3	95633468	95634468	+	745.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	8988.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	34.5	36.5	25.5	12.0	27.5	28.0
Merged-chr8-122020207-1	chr8	122019707	122020707	+	745.0	f1_c57bl6.idr	intron (NM_016812, intron 11 of 13)	intron (NM_016812, intron 11 of 13)	42183.0	NR_106096	102466915.0		NR_106096	ENSMUSG00000099140	Mir7237	Gm27482|mmu-mir-7237	microRNA 7237	ncRNA	2.0	9.0	10.0	2.0	0.0	0.0
Merged-chr7-17056924-1	chr7	17056424	17057424	+	745.0	f1_c57bl6.idr	promoter-TSS (NM_016868)	promoter-TSS (NM_016868)	-245.0	NM_016868	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	6.0	1.5	6.0	3.0	6.5	1.0
Merged-chr2-132570987-3	chr2	132570489	132571489	+	745.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355651, intron 2 of 19)	B2_Mm2|SINE|B2	7259.0	NM_001291050	74182.0	Mm.211211	NM_027096	ENSMUSG00000027346	Gpcpd1	2310004G06Rik|2310032D16Rik|AU015213|Gde5|Prei4|mKIAA1434	glycerophosphocholine phosphodiesterase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-48459506-2	chr14	48459017	48460017	+	745.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_001310584, intron 4 of 16)	intron (NM_001310584, intron 4 of 16)	13165.0	NR_132324	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	23.0	90.5	46.5	41.5	98.5	74.0
Merged-chr1-157444476-2	chr1	157444017	157445017	+	745.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14051.0	NM_001356418	226527.0	Mm.215960	NM_001033284	ENSMUSG00000033488	Cryzl2	-	crystallin zeta like 2	protein-coding	9.0	38.0	18.0	15.5	62.0	48.0
Merged-chr12-85688070-3	chr12	85687572	85688572	+	745.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016767, intron 1 of 2)	intron (NM_016767, intron 1 of 2)	1352.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-8836776-3	chr16	8836266	8837266	+	744.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081400, intron 2 of 3)	intron (NM_001081400, intron 2 of 3)	6666.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57706879-2	chr6	57706379	57707379	+	744.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133737, intron 1 of 8)	intron (NM_133737, intron 1 of 8)	4424.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-9935321-2	chr8	9934821	9935821	+	744.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41002.0	NM_176953	319583.0	Mm.80584	NM_176953	ENSMUSG00000049717	Lig4	5830471N16Rik|tiny	ligase IV, DNA, ATP-dependent	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41317884-3	chr19	41317403	41318403	+	744.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 8 of 16)	intron (NM_031376, intron 8 of 16)	-53899.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	2.5	15.0	4.5	5.0	0.0	8.0
Merged-chr14-55757785-3	chr14	55757262	55758262	+	744.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009894, intron 2 of 4)	intron (NM_009894, intron 2 of 4)	662.0	NM_009894	12684.0	Mm.466766	NM_009894	ENSMUSG00000022219	Cideb	1110030C18Rik|AI790179|CIDE-B	cell death-inducing DNA fragmentation factor, alpha subunit-like effector B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120258982-2	chr1	120258467	120259467	+	744.875	f0_balb.idr|f1_c57bl6.idr	intron (NM_001085409, intron 2 of 5)	intron (NM_001085409, intron 2 of 5)	6313.0	NM_133186	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	0.5	0.0	2.0	3.0	1.5	2.5
Merged-chr14-26640043-4	chr14	26639518	26640518	+	744.837524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007479, intron 1 of 5)	intron (NM_007479, intron 1 of 5)	1884.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125348285-2	chr6	125347805	125348805	+	744.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1418.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	3.0	0.0	0.0	0.0	0.5	0.5
Merged-chr8-105328268-2	chr8	105327768	105328768	+	744.833313	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177699)	TTS (NM_177699)	1904.0	NM_025486	66320.0	Mm.29990	NM_025486	ENSMUSG00000014856	Tmem208	1700006C06Rik|2610030K20Rik|Hspc171	transmembrane protein 208	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77317928-3	chr11	77317435	77318435	+	744.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 1 of 14)	MLT2B3|LTR|ERVL	-30345.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-60451810-4	chr14	60451308	60452308	+	744.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	73522.0	NM_001164705	72125.0	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	3.0	0.0	0.0	3.0	0.0	0.0
Merged-chr14-50060725-3	chr14	50060216	50061216	+	744.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL_2A-int|LTR|ERVL	23963.0	NM_146316	258313.0	Mm.463727	NM_146316	ENSMUSG00000060523	Olfr726	MOR246-4	olfactory receptor 726	protein-coding	0.5	11.0	2.0	3.0	0.0	7.0
Merged-chr9-116171094-2	chr9	116170622	116171622	+	744.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_009371, intron 1 of 7)	intron (NM_009371, intron 1 of 7)	4241.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	8.5	7.5	16.0	26.5	26.5	19.5
Merged-chr6-72156552-2	chr6	72156052	72157052	+	744.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33355.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171279417-2	chr1	171278949	171279949	+	744.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_008911, exon 6 of 13)	exon (NM_008911, exon 6 of 13)	1737.0	NM_008911	19044.0	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	10.0	6.0	0.5	5.0	3.5	5.0
Merged-chr18-39855891-3	chr18	39855392	39856392	+	744.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82395.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0.5	11.0	5.5	1.0	6.5	2.5
Merged-chr4-9144286-3	chr4	9143824	9144824	+	744.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124969.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-104152527-3	chr13	104152038	104153038	+	744.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025879, intron 7 of 12)	intron (NM_025879, intron 7 of 12)	25928.0	NM_025879	66975.0	Mm.272541	NM_025879	ENSMUSG00000021711	Trappc13	2410002O22Rik|2610524F24Rik|AI451892|AU017229	trafficking protein particle complex 13	protein-coding	2.5	5.0	14.5	9.0	33.0	39.0
Merged-chr4-56141827-3	chr4	56141288	56142288	+	744.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	599637.0	NM_025271	11471.0	Mm.251434	NM_025271	ENSMUSG00000070980	Actl7b	Gm26657|Tact1	actin-like 7b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156454584-1	chr1	156454084	156455084	+	744.666687	f0_balb.idr	intron (NM_009230, intron 3 of 15)	intron (NM_009230, intron 3 of 15)	19744.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	18.0	42.5	17.0	48.0	114.5	50.0
Merged-chr3-67062890-3	chr3	67062358	67063358	+	744.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356280, intron 3 of 7)	intron (NM_001356280, intron 3 of 7)	76891.0	NM_001356273	66880.0	Mm.316418	NM_025822	ENSMUSG00000034544	Rsrc1	1200013F24Rik|SRrp53	arginine/serine-rich coiled-coil 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101843779-3	chr13	101843294	101844294	+	744.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-75577.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34849048-3	chr8	34848549	34849549	+	744.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 18 of 26)	intron (NM_175091, intron 18 of 26)	41439.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	5.0	2.0	6.5	2.5	20.0	0.0
Merged-chr2-29679179-2	chr2	29678679	29679679	+	744.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001039087, exon 2 of 26)	exon (NM_001039087, exon 2 of 26)	59459.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-16214198-2	chr9	16213698	16214698	+	744.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	MTA_Mm|LTR|ERVL-MaLR	164033.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112665516-2	chr13	112665016	112666016	+	744.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_178746, intron 1 of 14)	intron (NM_178746, intron 1 of 14)	4750.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98782769-4	chr11	98782243	98783243	+	744.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7366.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173802943-3	chr1	173802446	173803446	+	744.611145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36027.0	NM_008329	15951.0	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55469274-3	chr16	55468765	55469765	+	744.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25466.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr8-105355349-2	chr8	105354849	105355849	+	744.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081332, intron 3 of 15)	intron (NM_001081332, intron 3 of 15)	7091.0	NM_001081332	277973.0	Mm.334766	NM_001081332	ENSMUSG00000014786	Slc9a5	Gm696	solute carrier family 9 (sodium/hydrogen exchanger), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145343858-2	chr6	145343304	145344304	+	744.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43821.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	13.0	34.0	13.0	5.0	6.0	16.0
Merged-chr5-140503186-3	chr5	140502684	140503684	+	744.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB7_1-LTR_MM|LTR|ERVK	-2425.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118295629-3	chr2	118295094	118296094	+	744.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201367, intron 1 of 2)	intron (NM_201367, intron 1 of 2)	-9320.0	NR_045919	73358.0	Mm.437192	NR_045919	ENSMUSG00000085889	1700054M17Rik	-	RIKEN cDNA 1700054M17 gene	ncRNA	5.5	11.0	5.5	6.0	5.5	4.5
Merged-chr19-5130691-2	chr19	5130191	5131191	+	744.549988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12283.0	NM_008451	16594.0	Mm.271648	NM_008451	ENSMUSG00000024862	Klc2	8030455F02Rik|AW212649|KLC 2|KLC-2	kinesin light chain 2	protein-coding	0.0	15.5	0.0	11.0	0.0	1.5
Merged-chr9-75361962-4	chr9	75361475	75362475	+	744.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14217.0	NM_013479	12049.0	Mm.25988	NM_013479	ENSMUSG00000032191	Bcl2l10	AA420380|AU023065|Boo|C85687|Diva	Bcl2-like 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12389206-2	chr13	12388706	12389706	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-6169.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-87773173-2	chr18	87772673	87773673	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	1060862.0	NM_001361145	12405.0	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60843729-2	chr2	60843229	60844229	+	744.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	37709.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113501559-2	chr6	113501059	113502059	+	744.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289699, intron 1 of 3)	intron (NM_001289699, intron 1 of 3)	259.0	NM_172487	210673.0	Mm.133060	NM_172487	ENSMUSG00000045009	Prrt3	6330505P20|B230206N24Rik	proline-rich transmembrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102031242-2	chr7	102030742	102031742	+	744.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 5 of 8)	intron (NM_029211, intron 5 of 8)	-13087.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	14.5	37.0	16.5	8.0	43.0	19.5
Merged-chr13-106715952-2	chr13	106715452	106716452	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	221006.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36811708-4	chr5	36811271	36812271	+	744.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008550, intron 15 of 18)	PB1D7|SINE|Alu	-15017.0	NM_026242	67568.0	Mm.332336	NM_026242	ENSMUSG00000055302	Mrfap1	9130413I22Rik|AL022827|Pam14	Morf4 family associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19674755-2	chr7	19674255	19675255	+	744.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001309795)	promoter-TSS (NM_001309795)	-835.0	NM_001309795	11813.0	Mm.28394	NM_001277944	ENSMUSG00000002992	Apoc2	apo-CII|apoC-II	apolipoprotein C-II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-33202821-2	chr14	33202321	33203321	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-14002.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24668853-2	chr17	24668346	24669346	+	744.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183149)	promoter-TSS (NM_183149)	-841.0	NM_001348231	213753.0	Mm.219581	NM_183149	ENSMUSG00000041130	Zfp598	BC023040|Ntrap|Znf598	zinc finger protein 598	protein-coding	11.0	33.5	36.5	29.5	98.5	58.5
Merged-chr8-115617021-2	chr8	115616521	115617521	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89873.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91109565-1	chr12	91109065	91110065	+	744.5	f0_balb.idr	promoter-TSS (NR_030473)	promoter-TSS (NR_030473)	-664.0	NR_030473	735273.0		NR_030473	ENSMUSG00000076118	Mir669c	Mirn669c|Mirn669c-1	microRNA 669c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142948928-2	chr3	142948428	142949428	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66433.0	NR_152127	320229.0	Mm.187582	NR_152127		9530052C20Rik	-	RIKEN cDNA 9530052C20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59033142-2	chr15	59032642	59033642	+	744.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	48884.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6955702-2	chr19	6955202	6956202	+	744.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290349, intron 25 of 30)	intron (NM_001290349, intron 25 of 30)	13140.0	NM_001285453	12015.0	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165133505-2	chr1	165133005	165134005	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27268.0	NM_032005	83993.0	Mm.190649	NM_032005	ENSMUSG00000026572	Tbx19	AU019250|D1Ertd754e|Tpit	T-box 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80794975-2	chr10	80794475	80795475	+	744.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_199322, exon 28 of 28)	3' UTR (NM_199322, exon 28 of 28)	3651.0	NM_023900	78670.0	Mm.41479	NM_023900	ENSMUSG00000035278	Plekhj1	9530063M10Rik	pleckstrin homology domain containing, family J member 1	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr8-46671835-2	chr8	46671335	46672335	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54544.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83369102-2	chr15	83368602	83369602	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1805.0	NR_027980	69291.0	Mm.66794	NM_001033147		1700001L05Rik	-	RIKEN cDNA 1700001L05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-115091657-2	chr14	115091157	115092157	+	744.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175500)	promoter-TSS (NM_175500)	-558.0	NM_175500	103978.0	Mm.320791	NM_175500	ENSMUSG00000022112	Gpc5	A230034F01Rik	glypican 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-15959995-2	chr4	15959495	15960495	+	744.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013752, intron 1 of 15)	RMER1B|Other|Other	2028.0	NM_013752	27354.0	Mm.20866	NM_013752	ENSMUSG00000028224	Nbn	Nbs1	nibrin	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr10-78436863-2	chr10	78436363	78437363	+	744.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172134, exon 11 of 11)	3' UTR (NM_172134, exon 11 of 11)	2064.0	NR_105837	102465221.0		NR_105837	ENSMUSG00000098932	Mir6410	Gm27916|mmu-mir-6410	microRNA 6410	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125363495-1	chr5	125362995	125363995	+	744.5	f0_balb.idr	Intergenic	Intergenic	-22401.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121308263-2	chr9	121307763	121308763	+	744.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	MTD|LTR|ERVL-MaLR	10761.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	1.0	0.0	3.5	3.0	0.0	1.5
Merged-chr4-30078168-2	chr4	30077668	30078668	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	-586428.0	NR_040655	75332.0	Mm.108636	NR_040655		4930556G01Rik	-	RIKEN cDNA 4930556G01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128301634-1	chr10	128301134	128302134	+	744.5	f1_c57bl6.idr	Intergenic	Intergenic	-1701.0	NM_133992	103135.0	Mm.244183	NM_133992	ENSMUSG00000005682	Pan2	1200014O24Rik|AI047843|AW742773|Usp52|mKIAA0710	PAN2 poly(A) specific ribonuclease subunit	protein-coding	8.0	18.0	6.0	8.0	14.5	5.0
Merged-chr19-24988405-2	chr19	24987905	24988905	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR12|LTR|ERV1	-11124.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	55.5	141.0	81.5	21.0	95.5	102.0
Merged-chr7-144906758-2	chr7	144906258	144907258	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8342.0	NM_001357868	72284.0	Mm.273049	NM_028184	ENSMUSG00000031072	Oraov1	2210010N10Rik|TAOS1	oral cancer overexpressed 1	protein-coding	0.5	0.0	0.0	1.5	0.0	0.0
Merged-chr8-88648123-2	chr8	88647623	88648623	+	744.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 1 of 12)	intron (NM_145857, intron 1 of 12)	776.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	2.5	36.0	33.5	22.0	53.5	20.5
Merged-chr1-152535133-2	chr1	152534633	152535633	+	744.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 12 of 17)	intron (NM_016846, intron 12 of 17)	90084.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128730648-2	chr4	128730148	128731148	+	744.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195083, intron 1 of 6)	intron (NM_001195083, intron 1 of 6)	3077.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	5.0	9.0	21.0	6.0	26.0	11.5
Merged-chr6-65150964-3	chr6	65150471	65151471	+	744.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6241.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76853626-2	chr12	76853126	76854126	+	744.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145927, intron 1 of 11)	MLTR14|LTR|ERV1	16159.0	NM_145927	110606.0	Mm.151174	NM_145927	ENSMUSG00000033373	Fntb	2010013E13Rik|AA409500	farnesyltransferase, CAAX box, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-117032182-2	chr13	117031682	117032682	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-6666.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12202549-2	chr15	12202049	12203049	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-2479.0	NM_001356498	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96639815-2	chr15	96639315	96640315	+	744.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166458, intron 1 of 15)	intron (NM_001166458, intron 1 of 15)	2147.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113190425-2	chr12	113189925	113190925	+	744.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153776)	TTS (NM_153776)	4522.0	NM_153776	69195.0	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	1.5	0.0	7.5	0.0	0.0	1.0
Merged-chr8-105567611-2	chr8	105567111	105568111	+	744.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007427, exon 2 of 5)	5' UTR (NM_007427, exon 2 of 5)	690.0	NM_007427	11604.0	Mm.441696	NM_007427	ENSMUSG00000005705	Agrp	Agrt|Art	agouti related neuropeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-104440287-2	chr11	104439787	104440787	+	744.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 2 of 14)	intron (NM_001359634, intron 2 of 14)	2004.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39785953-2	chr1	39785453	39786453	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19379.0	NM_001177348	100042065.0	Mm.209678	NM_001177348	ENSMUSG00000091937	Gm3646	-	predicted gene 3646	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134067275-3	chr1	134066759	134067759	+	744.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11896.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52576660-2	chr2	52576160	52577160	+	744.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	-18049.0	NM_001285427	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36676986-2	chr18	36676486	36677486	+	744.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357512, exon 6 of 12)	exon (NM_001357512, exon 6 of 12)	-2229.0	NM_001360989	67843.0	Mm.273350	NM_026404	ENSMUSG00000033272	Slc35a4	2610030J16Rik	solute carrier family 35, member A4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-99225439-2	chr4	99225008	99226008	+	744.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175029, intron 7 of 10)	Charlie12|DNA|hAT-Charlie	31361.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	6.5	10.5	16.5	1.5	8.5	11.5
Merged-chr2-166196945-2	chr2	166196445	166197445	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41262.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-133206413-2	chr6	133205908	133206908	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	-85808.0	NM_027784	232426.0	Mm.158689	NM_027784	ENSMUSG00000055594	5530400C23Rik	GRP	RIKEN cDNA 5530400C23 gene	protein-coding	0.0	9.5	0.0	1.5	0.0	0.0
Merged-chr18-34779111-2	chr18	34778611	34779611	+	744.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081256, intron 1 of 23)	intron (NM_001081256, intron 1 of 23)	2103.0	NM_001081256	277250.0	Mm.277906	NM_029518	ENSMUSG00000038773	Kdm3b	5830462I21Rik|JHDM2B|Jmjd1b|mKIAA1082	KDM3B lysine (K)-specific demethylase 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22028298-2	chr11	22027798	22028798	+	744.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252515, intron 21 of 24)	Lx2B2|LINE|L1	-26647.0	NM_011023	18423.0	Mm.129663	NM_011023	ENSMUSG00000005917	Otx1	A730044F23Rik|jv	orthodenticle homeobox 1	protein-coding	0.0	0.0	3.0	1.5	0.0	1.0
Merged-chr1-54476696-2	chr1	54476196	54477196	+	744.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163314, exon 27 of 27)	3' UTR (NM_001163314, exon 27 of 27)	-37670.0	NM_001033194	98488.0	Mm.25856	NM_001033194	ENSMUSG00000041303	Gtf3c3	TF3C-gamma|TFIIIC102	general transcription factor IIIC, polypeptide 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-76118181-2	chr10	76117681	76118681	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-7163.0	NM_023219	64454.0	Mm.155678	NM_023219	ENSMUSG00000020226	Slc5a4b	2010104G07Rik|SAAT1|SGLT3-b|SGLT3b|pSGLT2	solute carrier family 5 (neutral amino acid transporters, system A), member 4b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13429598-2	chr9	13429098	13430098	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1763.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36705504-2	chr15	36705004	36706004	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	85428.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-115319319-2	chr10	115318819	115319819	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-3728.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-28621177-4	chr6	28620683	28621683	+	744.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 10 of 23)	intron (NM_019776, intron 10 of 23)	140835.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47756297-7	chr17	47755823	47756823	+	744.4523929999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	(GA)n|Simple_repeat|Simple_repeat	18392.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	11.5	30.5	10.5	12.0	10.5	13.5
Merged-chr10-81355559-2	chr10	81355059	81356059	+	744.416687	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-1932.0	NM_028657	73822.0	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1|gr	major facilitator superfamily domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34132148-6	chr10	34131635	34132635	+	744.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4163.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141385441-3	chr4	141384990	141385990	+	744.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024412, intron 18 of 19)	intron (NM_024412, intron 18 of 19)	12609.0	NM_001146307	12733.0	Mm.167900	NM_024412	ENSMUSG00000033770	Clcnka	C75963|CLC-K1|Clcnk1	chloride channel, voltage-sensitive Ka	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82855229-2	chr18	82854729	82855729	+	744.416626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_125720)	promoter-TSS (NR_125720)	-668.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3798603-2	chr4	3798103	3799103	+	744.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER74A|LTR|ERVL	37052.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	4.5	2.5	0.5	4.0	2.5	5.5
Merged-chr10-13941625-4	chr10	13941124	13942124	+	744.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24451.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-145963744-3	chr3	145963262	145964262	+	744.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24108.0	NM_001166064	214804.0	Mm.268854	NM_001166064	ENSMUSG00000036863	Syde2	C430017H16Rik	synapse defective 1, Rho GTPase, homolog 2 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90731653-2	chr5	90731157	90732157	+	744.375	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-27641.0	NM_009141	20311.0	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	2.0	20.5	1.0	6.5	10.5	4.0
Merged-chr3-154328255-5	chr3	154327653	154328653	+	744.373352	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010713, exon 3 of 9)	exon (NM_010713, exon 3 of 9)	2407.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	0.0	0.0	6.5	0.0	2.0	0.0
Merged-chr3-127077587-2	chr3	127077082	127078082	+	744.333374	f0_c57.idr|f1_c57bl6.idr	exon (NM_001327939, exon 5 of 46)	exon (NM_001327939, exon 5 of 46)	-79130.0	NM_178655	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	24.5	11.0	14.5	4.0	4.5	4.0
Merged-chr6-120912991-2	chr6	120912491	120913491	+	744.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007544, intron 1 of 5)	intron (NM_007544, intron 1 of 5)	3833.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	1.0	0.0	0.0	3.5	0.0	0.5
Merged-chr6-83034666-2	chr6	83034159	83035159	+	744.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013586, intron 1 of 13)	intron (NM_013586, intron 1 of 13)	435.0	NM_013586	16950.0	Mm.380433	NM_013586	ENSMUSG00000000693	Loxl3	Lor2|Loxl2	lysyl oxidase-like 3	protein-coding	4.5	2.0	5.5	7.0	3.5	7.0
Merged-chr16-50534070-1	chr16	50533570	50534570	+	744.333313	f0_balb.idr	intron (NR_040379, intron 1 of 5)	ORR1B2|LTR|ERVL-MaLR	5568.0	NR_040379	619312.0	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11146853-2	chr4	11146353	11147353	+	744.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9588.0	NM_001199105	60599.0	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap|p53DINP1	transformation related protein 53 inducible nuclear protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-151071030-3	chr4	151070507	151071507	+	744.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 23 of 23)	intron (NM_001081557, intron 23 of 23)	-13054.0	NM_009498	22319.0	Mm.273930	NM_009498	ENSMUSG00000028955	Vamp3	D130027G05Rik|VAMP-3|ceb	vesicle-associated membrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-64417147-4	chr8	64416663	64417663	+	744.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97278.0	NR_030491	735270.0		NR_030491	ENSMUSG00000076042	Mir710	Mirn710|mmu-mir-710	microRNA 710	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-33251067-4	chr4	33250574	33251574	+	744.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2287.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67449599-4	chr17	67449065	67450065	+	744.325012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-95074.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65922642-4	chr3	65922128	65923128	+	744.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35621.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0.0	6.0	4.5	1.0	1.5	2.0
Merged-chr10-77903092-4	chr10	77902676	77903676	+	744.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145152)	promoter-TSS (NM_145152)	-640.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16922707-3	chr7	16922204	16923204	+	744.266663	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007590, intron 1 of 5)	intron (NM_007590, intron 1 of 5)	1328.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	0.0	0.5	0.0	0.0	0.0	2.5
Merged-chr11-118493810-4	chr11	118493299	118494299	+	744.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039168, intron 14 of 14)	intron (NM_001039168, intron 14 of 14)	16967.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53773783-2	chr11	53773283	53774283	+	744.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001159396, exon 4 of 10)	exon (NM_001159396, exon 4 of 10)	3310.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77776521-2	chr18	77776021	77777021	+	744.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007505, intron 2 of 11)	RSINE1|SINE|B4	-2636.0	NM_001357531	225745.0	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32502621-3	chr9	32502110	32503110	+	744.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	38842.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11547812-3	chr2	11547327	11548327	+	744.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	6102.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-35065708-3	chr4	35065202	35066202	+	744.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 2 of 3)	intron (NM_178061, intron 2 of 3)	-86353.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119235812-3	chr11	119235319	119236319	+	744.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175430, intron 3 of 18)	B3A|SINE|B2	7247.0	NM_175430	207607.0	Mm.189885	NM_175430	ENSMUSG00000039963	Ccdc40	B930008I02Rik	coiled-coil domain containing 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-53216861-4	chr6	53216360	53217360	+	744.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4304.0	NR_073371	231989.0	Mm.372520	NR_073371	ENSMUSG00000107935	Gm4872	D430007I03	predicted gene 4872	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-89646809-3	chr1	89646304	89647304	+	744.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 6 of 16)	intron (NM_001037136, intron 6 of 16)	37088.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92369281-4	chr5	92368785	92369785	+	744.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-5989.0	NR_038116	56066.0	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	3.0	13.5	1.5	0.0	5.5	1.5
Merged-chr11-113749852-2	chr11	113749352	113750352	+	744.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163346, intron 1 of 1)	intron (NM_001163346, intron 1 of 1)	1308.0	NM_020006	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32682468-2	chr16	32681968	32682968	+	744.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289443, intron 5 of 5)	intron (NM_001289443, intron 5 of 5)	9314.0	NM_001289443	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0.0	2.0	6.0	2.0	0.0	2.5
Merged-chr17-24719214-2	chr17	24718714	24719714	+	744.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008503)	promoter-TSS (NM_008503)	618.0	NR_028515	100306952.0	Mm.484806	NR_028515	ENSMUSG00000089255	Snora78	ACA64	small nucleolar RNA, H/ACA box 7	snoRNA	94.5	346.0	277.5	135.0	450.0	309.5
Merged-chr5-135855264-2	chr5	135854764	135855764	+	744.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_021403, intron 8 of 14)	intron (NM_021403, intron 8 of 14)	-32655.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134001970-2	chr4	134001480	134002480	+	744.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1116.0	NM_026144	67422.0	Mm.100290	NM_026144	ENSMUSG00000012117	Dhdds	3222401G21Rik|CIT|DS|HDS|W91638	dehydrodolichyl diphosphate synthase	protein-coding	0.0	4.5	2.0	1.0	0.0	0.0
Merged-chr4-143190828-2	chr4	143190328	143191328	+	744.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001256380, intron 2 of 7)	intron (NM_001256380, intron 2 of 7)	21881.0	NM_001081355	110593.0	Mm.332020	NM_001081355	ENSMUSG00000057637	Prdm2	4833427P12Rik|E330024L24Rik|Gm1033|Gm19732|KMT8|Riz|Riz1|Znfpr1c1	PR domain containing 2, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-99039979-4	chr11	99039488	99040488	+	744.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1256.0	NM_010517	16010.0	Mm.233799	NM_010517	ENSMUSG00000017493	Igfbp4	AI875747|Deb2|IBP-4|IGFBP-4	insulin-like growth factor binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70519752-2	chr14	70519252	70520252	+	744.125	f1_balb.idr|f1_c57bl6.idr	intron (NR_033241, intron 1 of 19)	intron (NR_033241, intron 1 of 19)	508.0	NM_009755	12153.0	Mm.27757	NM_009755	ENSMUSG00000022098	Bmp1	Pcp|Tld	bone morphogenetic protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81155465-3	chr15	81154966	81155966	+	744.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 1 of 13)	intron (NM_001082536, intron 1 of 13)	35291.0	NM_001082536	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-60505810-3	chr3	60505320	60506320	+	744.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	4641.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45094016-3	chr13	45093492	45094492	+	744.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91896.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	15.5	25.0	18.5	18.5	0.0	3.0
Merged-chr11-103418248-3	chr11	103417755	103418755	+	744.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-5591.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	6.5	3.0	9.0	2.0	15.5	9.0
Merged-chr6-31177776-2	chr6	31177276	31178276	+	744.083374	f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	40698.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100352291-4	chr12	100351773	100352773	+	744.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 16 of 19)	intron (NM_001033213, intron 16 of 19)	75664.0	NR_045741	100038713.0	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-194993597-4	chr1	194992973	194993973	+	744.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16514.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133198784-4	chr4	133198162	133199162	+	744.029785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153423)	TTS (NM_153423)	3007.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	5.0	3.5	6.0	7.5	9.0	3.5
Merged-chr15-99703488-2	chr15	99702988	99703988	+	744.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031842, intron 2 of 12)	intron (NM_031842, intron 2 of 12)	1201.0	NM_031842	83797.0	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	0.0	3.0	4.5	1.5	0.0	4.0
Merged-chr8-84659347-2	chr8	84658832	84659832	+	744.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3520.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	2.5	4.5	6.5	4.0	9.0	3.5
Merged-chr11-94551085-2	chr11	94550585	94551585	+	744.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1878.0	NM_001013381	237926.0	Mm.342275	NM_001013381	ENSMUSG00000039096	Rsad1	B430319G23|BC056485	radical S-adenosyl methionine domain containing 1	protein-coding	0.0	0.0	3.5	5.0	0.5	2.0
Merged-chr1-146024402-2	chr1	146023902	146024902	+	744.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_A|LINE|L1	-471227.0	NM_001357571	215378.0	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83156411-2	chr6	83155909	83156909	+	744.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_023790)	promoter-TSS (NM_023790)	5.0	NM_027948	71837.0	Mm.17621	NM_027948	ENSMUSG00000030030	1700003E16Rik	AU041756	RIKEN cDNA 1700003E16 gene	protein-coding	0.0	0.0	0.0	0.0	6.0	0.5
Merged-chr9-50556407-2	chr9	50555907	50556907	+	744.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025687)	TTS (NM_025687)	-1269.0	NM_133217	170752.0	Mm.390149	NM_133217	ENSMUSG00000032066	Bco2	B-diox-II|Bcdo2|Bcmo2|CMO2	beta-carotene oxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84476440-2	chr2	84475940	84476940	+	744.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355271, intron 1 of 8)	(TC)n|Simple_repeat|Simple_repeat	319.0	NM_001177319	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115709185-2	chr8	115708685	115709685	+	744.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2291.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40635991-2	chr12	40635491	40636491	+	744.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 5 of 52)	intron (NM_172803, intron 5 of 52)	189938.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20304492-2	chr11	20303992	20304992	+	744.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_018861, exon 8 of 8)	exon (NM_018861, exon 8 of 8)	28221.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-62463257-1	chr7	62462757	62463757	+	744.0	f0_balb.idr	3' UTR (NM_013788, exon 1 of 1)	3' UTR (NM_013788, exon 1 of 1)	1253.0	NM_013788	27412.0	Mm.422745	NM_013788	ENSMUSG00000070526	Peg12	Frat3	paternally expressed 12	protein-coding	3.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33242108-2	chr2	33241608	33242608	+	744.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011923, intron 2 of 4)	intron (NM_011923, intron 2 of 4)	26147.0	NM_011923	26360.0	Mm.208919	NM_011923	ENSMUSG00000004105	Angptl2	AI593246|AW260363|Arp2	angiopoietin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-8736591-1	chr5	8736091	8737091	+	744.0	f0_balb.idr	intron (NM_011076, intron 25 of 29)	intron (NM_011076, intron 25 of 29)	-61556.0	NM_011075	18669.0	Mm.146649	NM_011075	ENSMUSG00000028970	Abcb1b	Abcb1|Mdr1|Mdr1b|Pgy-1|Pgy1|mdr	ATP-binding cassette, sub-family B (MDR/TAP), member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97626500-1	chr11	97626000	97627000	+	744.0	f1_balb.idr	TTS (NM_175332)	TTS (NM_175332)	3216.0	NM_175332	103551.0	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	0.0	0.5	1.0	2.0	0.5	1.0
Merged-chr17-24718757-1	chr17	24718257	24719257	+	744.0	f1_c57bl6.idr	promoter-TSS (NM_026205)	promoter-TSS (NM_026205)	-700.0	NM_026205	67504.0	Mm.46159	NM_026205	ENSMUSG00000008482	Rnf151	1700010O16Rik|AV047371	ring finger protein 151	protein-coding	7.5	9.0	13.0	11.0	46.5	29.0
Merged-chr10-72656031-2	chr10	72655531	72656531	+	744.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001293684, exon 2 of 8)	exon (NM_001293684, exon 2 of 8)	1185.0	NM_001293683	52696.0	Mm.62876	NM_025635	ENSMUSG00000019923	Zwint	2010007E07Rik|2600001N01Rik|D10Ertd749e|Zwint-1	ZW10 interactor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-12699134-3	chr10	12698631	12699631	+	744.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 22 of 73)	intron (NM_011682, intron 22 of 73)	162604.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	4.0	6.0	12.5	11.5	0.0	11.0
Merged-chr7-36720895-1	chr7	36720395	36721395	+	744.0	f1_c57bl6.idr	intron (NM_172298, intron 1 of 1)	intron (NM_172298, intron 1 of 1)	22777.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	14.0	63.5	67.0	12.0	33.5	25.5
Merged-chr6-65043294-1	chr6	65042794	65043794	+	744.0	f0_balb.idr	promoter-TSS (NM_001253392)	promoter-TSS (NM_001253392)	88.0	NM_001253392	13990.0	Mm.99113	NM_007958	ENSMUSG00000029920	Smarcad1	AV081750|AW226546|D6Pas1|Etl1|etl-1|mKIAA1122	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-85464160-1	chr17	85463660	85464660	+	744.0	f0_balb.idr	Intergenic	Intergenic	154236.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-49484318-1	chr9	49483818	49484818	+	744.0	f0_balb.idr	intron (NM_172770, intron 2 of 21)	intron (NM_172770, intron 2 of 21)	1907.0	NM_172770	235330.0	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105048582-2	chr3	105048082	105049082	+	744.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 1 of 5)	intron (NM_030249, intron 1 of 5)	4371.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-12010010-2	chr4	12009510	12010510	+	744.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43436.0	NR_040577	100503636.0	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152165770-2	chr3	152165270	152166270	+	744.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_016867, exon 1 of 6)	exon (NM_016867, exon 1 of 6)	130.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142759554-1	chr3	142759054	142760054	+	744.0	f1_c57bl6.idr	Intergenic	Intergenic	-5693.0	NM_145546	229906.0	Mm.271756	NM_145546	ENSMUSG00000028271	Gtf2b	-	general transcription factor IIB	protein-coding	10.0	13.0	6.0	1.0	12.5	2.0
Merged-chr9-114932755-1	chr9	114932255	114933255	+	744.0	f1_balb.idr	intron (NM_175380, intron 1 of 7)	intron (NM_175380, intron 1 of 7)	1232.0	NM_175380	333433.0	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	1.0	6.0	5.0	3.5	0.0	5.5
Merged-chr1-151688734-2	chr1	151688234	151689234	+	744.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 5 of 13)	intron (NM_022018, intron 5 of 13)	65993.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124489879-2	chr5	124489379	124490379	+	744.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029532, intron 1 of 1)	intron (NM_029532, intron 1 of 1)	6724.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79020413-2	chr11	79019913	79020913	+	744.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013571, exon 16 of 18)	exon (NM_013571, exon 16 of 18)	-3184.0	NR_045873	790910.0	Mm.440410	NR_045873		Gm11201	-	predicted gene 11201	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103841128-3	chr3	103840624	103841624	+	744.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142960, intron 3 of 3)	RLTR45|LTR|ERVK	8428.0	NM_001142960	229672.0	Mm.297245	NM_001142959	ENSMUSG00000044165	Bcl2l15	Bfk|Gm566	BCLl2-like 15	protein-coding	13.0	36.5	41.5	7.5	42.5	14.0
Merged-chr2-118695985-2	chr2	118695485	118696485	+	744.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033254, intron 10 of 10)	intron (NM_001033254, intron 10 of 10)	7978.0	NM_001081971	383787.0	Mm.35758	NM_001081971	ENSMUSG00000078137	Ankrd63	Gm1337	ankyrin repeat domain 63	protein-coding	0.5	0.0	2.0	0.0	0.0	0.0
Merged-chr13-113619931-2	chr13	113619431	113620431	+	744.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1367.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120749962-2	chr4	120749462	120750462	+	744.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2786.0	NM_001081142	60613.0	Mm.249977	NM_001081142	ENSMUSG00000028631	Kcnq4	-	potassium voltage-gated channel, subfamily Q, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110130950-1	chr11	110130450	110131450	+	744.0	f1_c57bl6.idr	intron (NM_147220, intron 23 of 38)	intron (NM_147220, intron 23 of 38)	-35013.0	NM_153145	217258.0	Mm.344148	NM_153145	ENSMUSG00000041828	Abca8a	-	ATP-binding cassette, sub-family A (ABC1), member 8a	protein-coding	6.5	9.0	11.0	0.0	1.5	6.0
Merged-chr5-123280533-3	chr5	123280047	123281047	+	744.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52357.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-71593956-1	chr5	71593456	71594456	+	744.0	f0_balb.idr	intron (NM_001359050, intron 2 of 2)	intron (NM_001359050, intron 2 of 2)	-45751.0	NM_030052	78174.0	Mm.60690	NM_030052	ENSMUSG00000049387	Cox7b2	4930503B16Rik	cytochrome c oxidase subunit VIIb2	protein-coding	3.5	5.0	1.0	3.5	5.0	1.0
Merged-chr2-25360906-2	chr2	25360406	25361406	+	744.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033293)	TTS (NM_001033293)	-4574.0	NM_031843	83768.0	Mm.21440	NM_031843	ENSMUSG00000026958	Dpp7	DPPII|Dpp2|QPP	dipeptidylpeptidase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184031454-2	chr1	184030954	184031954	+	744.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2544.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79842609-1	chr11	79842109	79843109	+	744.0	f1_c57bl6.idr	Intergenic	Intergenic	116209.0	NR_029959	723853.0		NR_029959	ENSMUSG00000065489	Mir365-2	Mirn365-2|mir-365-2	microRNA 365-2	ncRNA	0.0	3.0	1.0	0.0	0.0	0.0
Merged-chr2-52995016-2	chr2	52994516	52995516	+	744.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	137148.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-41044773-2	chr9	41044277	41045277	+	744.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 4 of 13)	intron (NM_176860, intron 4 of 13)	34729.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	2.0	0.5	3.5	4.0	4.0	3.5
Merged-chr13-30694875-2	chr13	30694375	30695375	+	744.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134068, intron 3 of 7)	intron (NM_134068, intron 3 of 7)	34816.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60855716-2	chr2	60855216	60856216	+	744.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	ID4|SINE|ID	25722.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72936672-1	chr6	72936172	72937172	+	744.0	f1_balb.idr	Intergenic	Intergenic	21560.0	NM_001039392	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	2.0	2.5	0.0	8.0	6.0	0.0
Merged-chr12-110891745-2	chr12	110891245	110892245	+	744.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289510, intron 1 of 19)	B1F2|SINE|Alu	2481.0	NM_001081057	104859.0	Mm.35583	NM_175336	ENSMUSG00000021275	Tecpr2	4930573I19Rik|AI604920|mKIAA0297	tectonin beta-propeller repeat containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126484376-2	chr7	126483876	126484876	+	744.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2979.0	NM_172745	233870.0	Mm.197829	NM_172745	ENSMUSG00000073838	Tufm	2300002G02Rik|C76308|C76389|EF-TuMT|EFTU	Tu translation elongation factor, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18690190-2	chr16	18689690	18690690	+	744.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60252.0	NM_213614	18951.0	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55585711-2	chr14	55585211	55586211	+	744.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033146)	promoter-TSS (NM_033146)	-457.0	NM_033146	85308.0	Mm.40667	NM_033146	ENSMUSG00000022217	Emc9	1500005A01Rik|Cgi112|Fam158a	ER membrane protein complex subunit 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87377460-2	chr17	87376960	87377960	+	744.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 19 of 19)	intron (NM_028639, intron 19 of 19)	50281.0	NM_029298	75467.0	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100122674-2	chr7	100122174	100123174	+	744.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1174.0	NM_133692	67967.0	Mm.37562	NM_133692	ENSMUSG00000030726	Pold3	2410142G14Rik|C85233|P66|P68	polymerase (DNA-directed), delta 3, accessory subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138174747-3	chr1	138174260	138175260	+	744.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	366.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3451988-2	chr8	3451488	3452488	+	744.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133962, exon 17 of 20)	exon (NM_133962, exon 17 of 20)	15660.0	NM_026951	69129.0	Mm.45279	NM_026951	ENSMUSG00000069633	Pex11g	1810022F11Rik|1810049N02Rik|Pex11c|Pex11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149789036-2	chr4	149788536	149789536	+	744.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14769.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34936797-2	chr6	34936297	34937297	+	744.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009292, intron 7 of 8)	intron (NM_009292, intron 7 of 8)	15849.0	NM_009292	20899.0	Mm.5171	NM_009292	ENSMUSG00000029848	Stra8	-	stimulated by retinoic acid gene 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34948932-1	chr5	34948432	34949432	+	744.0	f0_c57.idr	promoter-TSS (NM_173402)	promoter-TSS (NM_173402)	-516.0	NM_173402	71729.0	Mm.196208	NM_173402	ENSMUSG00000029101	Rgs12	1200016K18Rik|4632412M04Rik|AI481290|E130309H11	regulator of G-protein signaling 12	protein-coding	0.0	0.0	1.5	0.0	1.5	0.0
Merged-chr15-68991770-2	chr15	68991270	68992270	+	744.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010158, intron 1 of 8)	B4A|SINE|B4	63350.0	NM_010158	13992.0	Mm.17964	NM_010158	ENSMUSG00000022332	Khdrbs3	Etle|SLM-2|Salp|Slm2|T-STAR	KH domain containing, RNA binding, signal transduction associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-101061198-2	chr9	101060698	101061698	+	744.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13564.0	NM_001100451	77853.0	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	MSL complex subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-63294924-1	chr13	63294424	63295424	+	744.0	f1_balb.idr	intron (NR_045794, intron 1 of 2)	intron (NR_045794, intron 1 of 2)	2223.0	NR_045794	100504114.0	Mm.437070	NR_045794	ENSMUSG00000097242	Gm16907	-	predicted gene, 16907	ncRNA	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr17-86958318-2	chr17	86957818	86958818	+	744.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-4793.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103234378-1	chr14	103233878	103234878	+	744.0	f0_balb.idr	intron (NM_207215, intron 26 of 84)	L2a|LINE|L2	112422.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113845494-2	chr13	113844994	113845994	+	744.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	50986.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9210291-2	chr3	9209791	9210791	+	744.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-40276.0	NM_177660	229055.0	Mm.103262	NM_177660	ENSMUSG00000069114	Zbtb10	4832414A18|AU021107|RINZF	zinc finger and BTB domain containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128122557-3	chr2	128122033	128123033	+	743.955566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028765, intron 17 of 17)	intron (NM_028765, intron 17 of 17)	-3505.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	1.0	0.0	5.5	1.0	1.0	0.0
Merged-chr14-30322510-3	chr14	30322010	30323010	+	743.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 3 of 46)	intron (NM_001083616, intron 3 of 46)	30976.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127426912-3	chr10	127426409	127427409	+	743.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359246, intron 1 of 23)	intron (NM_001359246, intron 1 of 23)	6042.0	NM_001359243	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	11.0	31.0	12.0	6.5	12.0	18.5
Merged-chr11-32321386-4	chr11	32320884	32321884	+	743.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21315.0	NM_175000	216635.0	Mm.338482	NM_175000	ENSMUSG00000020295	Hbq1a	A230090E05Rik|Gm876|Hbq1|Hbqt2	hemoglobin, theta 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84837839-2	chr1	84837339	84838339	+	743.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133975, intron 1 of 40)	intron (NM_133975, intron 1 of 40)	1465.0	NM_133975	14897.0	Mm.209265	NM_133975	ENSMUSG00000026219	Trip12	1110036I07Rik|6720416K24Rik|AA410158|Gtl6|TRIP-12	thyroid hormone receptor interactor 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35088677-2	chr17	35088187	35089187	+	743.916626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178592)	promoter-TSS (NM_178592)	-604.0	NM_178592	193742.0	Mm.43745	NM_178592	ENSMUSG00000007036	Abhd16a	AI326074|Bat-5|Bat5|D17H6S82E|NG26	abhydrolase domain containing 16A	protein-coding	15.0	68.5	45.0	22.0	45.5	37.0
Merged-chr13-58453799-3	chr13	58453316	58454316	+	743.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50473.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-101515654-3	chr14	101515146	101516146	+	743.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	93545.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-58462462-3	chr4	58461987	58462987	+	743.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172989, intron 3 of 3)	intron (NM_172989, intron 3 of 3)	-21389.0	NR_037278	100526502.0		NR_037278	ENSMUSG00000093293	Mir3095	mir-3095|mmu-mir-3095	microRNA 3095	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64764621-3	chr5	64764116	64765116	+	743.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38907.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12795594-4	chr15	12795105	12796105	+	743.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29052.0	NM_029998	77877.0	Mm.207311	NM_029998	ENSMUSG00000022195	6030458C11Rik	-	RIKEN cDNA 6030458C11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-86842843-2	chr3	86842375	86843375	+	743.875	f0_balb.idr|f1_balb.idr	intron (NM_001195500, intron 2 of 11)	RLTR41A2|LTR|ERV1	78009.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	6.5	5.5	10.0	6.0	6.5	12.5
Merged-chr15-100083723-2	chr15	100083223	100084223	+	743.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_037311, intron 3 of 3)	B1F|SINE|Alu	45059.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97540336-4	chr11	97539836	97540836	+	743.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 4 of 19)	intron (NM_018873, intron 4 of 19)	34790.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	0.0	0.5	1.5	0.0	0.5	0.5
Merged-chr3-126628123-3	chr3	126627628	126628628	+	743.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	31177.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120363556-3	chr10	120363046	120364046	+	743.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010441, exon 5 of 5)	3' UTR (NM_010441, exon 5 of 5)	-25977.0	NR_040626	320626.0	Mm.446091	NR_040626	ENSMUSG00000090191	9230105E05Rik	-	RIKEN cDNA 9230105E05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-83592116-3	chr9	83591647	83592647	+	743.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 2 of 3)	intron (NM_172507, intron 2 of 3)	43809.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0.0	0.0	2.0	0.5	14.0	0.5
Merged-chr11-20247211-1	chr11	20246711	20247711	+	743.75	f0_balb.idr	intron (NM_172260, intron 1 of 6)	intron (NM_172260, intron 1 of 6)	2213.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	15.5	0.0	8.0	2.5	4.5	0.5
Merged-chr11-114790384-2	chr11	114789884	114790884	+	743.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028055)	TTS (NM_028055)	5508.0	NM_028055	72014.0	Mm.38347	NM_028055	ENSMUSG00000000202	Btbd17	1500005I02Rik|Tango10a	BTB (POZ) domain containing 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-80671945-4	chr1	80671438	80672438	+	743.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	-6586.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114874742-2	chr11	114874242	114875242	+	743.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15299.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54728712-2	chr11	54728212	54729212	+	743.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_178626, intron 3 of 5)	intron (NM_178626, intron 3 of 5)	58991.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-123515790-4	chr3	123515312	123516312	+	743.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7476.0	NR_028574	69895.0	Mm.260791	NR_028574	ENSMUSG00000104960	Snhg8	1110065M07Rik|2010109N14Rik	small nucleolar RNA host gene 8	ncRNA	20.5	17.5	4.0	0.0	16.5	4.0
Merged-chr2-144008152-2	chr2	144007652	144008652	+	743.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	3111.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31533429-2	chr15	31532929	31533929	+	743.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2392.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31094947-3	chr2	31094533	31095533	+	743.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 4 of 15)	B1_Mus2|SINE|Alu	1467.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154659493-6	chr2	154658903	154659903	+	743.733337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	2377.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115996394-4	chr6	115995788	115996788	+	743.71875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1283.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180704381-3	chr2	180703962	180704962	+	743.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291432, intron 1 of 5)	B1_Mur4|SINE|Alu	-2360.0	NM_175551	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122209065-3	chr3	122208562	122209562	+	743.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36495.0	NM_008129	14630.0	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69129917-3	chr11	69129478	69130478	+	743.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011786, intron 4 of 14)	intron (NM_011786, intron 4 of 14)	3601.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	22.5	17.0	21.5	6.0	4.0	7.5
Merged-chr1-64193880-2	chr1	64193380	64194380	+	743.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72491.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-145131457-3	chr3	145130966	145131966	+	743.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162538, intron 7 of 16)	intron (NM_001162538, intron 7 of 16)	12866.0	NM_025714	52184.0	Mm.259105	NM_025714	ENSMUSG00000028256	Odf2l	4733401D09Rik|9630045K08Rik|D3Ertd250e	outer dense fiber of sperm tails 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96822836-3	chr11	96822324	96823324	+	743.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008686, intron 2 of 4)	intron (NM_008686, intron 2 of 4)	1107.0	NM_001361682	18023.0	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-42180198-3	chr16	42179691	42180691	+	743.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001361282, exon 11 of 11)	3' UTR (NM_001361282, exon 11 of 11)	123278.0	NR_105858	102466172.0		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106650555-2	chr11	106650055	106651055	+	743.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-37625.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55972345-2	chr16	55971845	55972845	+	743.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_024218)	TTS (NM_024218)	-1459.0	NM_173026	271377.0	Mm.282814	NM_173026	ENSMUSG00000022601	Zbtb11	9230110G02Rik|ZNF-U69274	zinc finger and BTB domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-70838750-4	chr2	70838313	70839313	+	743.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13333.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-72458471-4	chr9	72457969	72458969	+	743.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009359, exon 12 of 12)	3' UTR (NM_009359, exon 12 of 12)	19940.0	NM_008613	17427.0	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	5.0	0.0	5.0	0.0	0.5	4.5
Merged-chr7-143094955-2	chr7	143094455	143095455	+	743.599976	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020277)	promoter-TSS (NM_020277)	-313.0	NM_020277	56843.0	Mm.286668	NM_020277	ENSMUSG00000009246	Trpm5	9430099A16Rik|LTrpC-5|Ltrpc5|Mtr1	transient receptor potential cation channel, subfamily M, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-136668945-3	chr3	136668470	136669470	+	743.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1096.0	NM_008913	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135397131-3	chr5	135396632	135397632	+	743.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2586.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71185449-3	chr17	71184958	71185958	+	743.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	1480.0	NM_022882	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	3.0	0.0	2.0	6.0	3.0	3.0
Merged-chr10-127937613-2	chr10	127937113	127938113	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	39078.0	NM_027301	70061.0	Mm.158320	NM_027301	ENSMUSG00000040127	Sdr9c7	1810054F20Rik|Rdh20|Rdhs|SDR-O|Sdro	4short chain dehydrogenase/reductase family 9C, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102029512-2	chr5	102029012	102030012	+	743.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	40409.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	19.0	56.5	23.0	29.5	71.5	35.5
Merged-chr11-61868973-2	chr11	61868473	61869473	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13881.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102991994-2	chr11	102991494	102992494	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7927.0	NR_105896	102466988.0		NR_105896	ENSMUSG00000098613	Mir6931	Gm27303|mmu-mir-6931	microRNA 6931	ncRNA	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr16-35899149-2	chr16	35898649	35899649	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27767.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21244196-2	chr9	21243696	21244696	+	743.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_053190, exon 3 of 3)	exon (NM_053190, exon 3 of 3)	4247.0	NM_053190	94226.0	Mm.190619	NM_053190	ENSMUSG00000045087	S1pr5	Edg8|S1P5|lpB4	sphingosine-1-phosphate receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83741245-2	chr11	83740745	83741745	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5695.0	NM_183249	66107.0	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127511164-2	chr7	127510664	127511664	+	743.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304266)	promoter-TSS (NM_001304266)	-819.0	NM_001304266	100043597.0	Mm.428042	NM_175144	ENSMUSG00000053877	Srcap	B930091H02Rik|D030022P06Rik|F630004O05Rik	Snf2-related CREBBP activator protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24694694-2	chr17	24694195	24695195	+	743.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023040, intron 2 of 2)	intron (NM_023040, intron 2 of 2)	1461.0	NM_023040	11692.0	Mm.28124	NM_023040	ENSMUSG00000040888	Gfer	Alr|ERV1	growth factor, augmenter of liver regeneration	protein-coding	5.0	21.0	2.5	1.5	1.5	1.0
Merged-chr9-78296128-2	chr9	78295628	78296628	+	743.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122660, intron 2 of 6)	intron (NM_001122660, intron 2 of 6)	6200.0	NM_001122660	100042314.0	Mm.482247	NM_001122660	ENSMUSG00000074179	Gm10639	-	predicted gene 10639	protein-coding	1.0	1.0	0.0	1.0	1.0	0.0
Merged-chr8-116372826-2	chr8	116372326	116373326	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132189.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-24513423-2	chr9	24512923	24513923	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10283.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86465345-2	chr1	86464845	86465845	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	39016.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-121138241-2	chr6	121137741	121138741	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7219.0	NM_001270475	194401.0	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-114909811-2	chr9	114909311	114910311	+	743.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175380, intron 5 of 7)	RLTR20C2_MM|LTR|ERVK	24176.0	NM_175380	333433.0	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-110616113-2	chr8	110615613	110616613	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-2454.0	NR_151674	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154749015-2	chr4	154748517	154749517	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-81150.0	NM_028513	73353.0	Mm.30958	NM_028513	ENSMUSG00000051276	Actrt2	1700052K15Rik|Arp-T2|Arpm2	actin-related protein T2	protein-coding	0.0	0.0	2.0	0.0	0.0	1.0
Merged-chr4-100887374-2	chr4	100886874	100887874	+	743.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198037, intron 2 of 26)	MTD|LTR|ERVL-MaLR	110695.0	NM_198037	320508.0	Mm.151962	NM_198037	ENSMUSG00000028532	Cachd1	1190007F10Rik|AI852726|B430218L07Rik|Vwcd1|mKIAA1573	cache domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-83534511-2	chr9	83534011	83535011	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13827.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131026863-2	chr1	131026363	131027363	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7018.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-97960668-2	chr16	97960168	97961168	+	743.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175428, intron 1 of 2)	intron (NM_175428, intron 1 of 2)	1954.0	NM_001081685	114565.0	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75344523-2	chr18	75344023	75345023	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22565.0	NR_155535	102636262.0	Mm.421168	NR_155535		Gm20544	-	predicted gene 20544	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137683312-2	chr4	137682859	137683859	+	743.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081155, intron 1 of 24)	intron (NM_001081155, intron 1 of 24)	1732.0	NM_001256218	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	3.5	2.0	0.0	3.5	0.0	1.0
Merged-chr4-90165140-2	chr4	90164640	90165640	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-53680.0	NM_153102	236537.0	Mm.214642	NM_153102	ENSMUSG00000070902	Zfp352	2czf48	zinc finger protein 352	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128752825-2	chr2	128752325	128753325	+	743.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 6 of 18)	intron (NM_008587, intron 6 of 18)	53910.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	2.0	0.5	5.0	3.0	4.0	3.0
Merged-chr12-86166409-4	chr12	86165915	86166915	+	743.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2926.0	NR_046081	328136.0	Mm.312050	NR_046081	ENSMUSG00000097543	Gm805	-	predicted gene 805	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55827536-2	chr12	55827036	55828036	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	-6020.0	NM_001286263	56784.0	Mm.292180	NM_019994	ENSMUSG00000021027	Ralgapa1	2310003F20Rik|4930400K19Rik|AI563624|GRIPE|Garnl1|Tulip1|mKIAA0884	Ral GTPase activating protein, alpha subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87020006-2	chr11	87019506	87020506	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-26244.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104234354-2	chr8	104233854	104234854	+	743.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045642, intron 5 of 8)	intron (NR_045642, intron 5 of 8)	14204.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106967785-2	chr11	106967285	106968285	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31740.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46481635-2	chr11	46481135	46482135	+	743.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_134250)	TTS (NM_134250)	26704.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	4.5	7.0	6.0	1.5	6.5	3.5
Merged-chr1-130350449-2	chr1	130349949	130350949	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72375.0	NR_151525	102640368.0		NR_151525	ENSMUSG00000087691	Gm15674	-	predicted gene 15674	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57243551-2	chr16	57243051	57244051	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12085.0	NM_001358433	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152904563-2	chr2	152904063	152905063	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6789.0	NM_001081044	228785.0	Mm.250604	NM_001081044	ENSMUSG00000027470	Mylk2	9830004H17Rik|BB138278	myosin, light polypeptide kinase 2, skeletal muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102318838-4	chr11	102318322	102319322	+	743.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011551, intron 1 of 20)	CpG-2669	274.0	NM_001302955	21429.0	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	25.0	42.5	50.0	46.5	65.5	50.0
Merged-chr3-38561485-3	chr3	38561047	38562047	+	743.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-76731.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70007086-2	chr11	70006586	70007586	+	743.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007888, intron 9 of 14)	intron (NM_007888, intron 9 of 14)	-4957.0	NR_029758	723896.0		NR_029758	ENSMUSG00000065534	Mir324	Mirn324|mir-324|mmu-mir-324	microRNA 324	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-124094456-2	chr14	124093956	124094956	+	743.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207667, intron 3 of 4)	ORR1B2|LTR|ERVL-MaLR	98090.0	NM_010201	14169.0	Mm.206362	NM_010201	ENSMUSG00000025551	Fgf14	FHF-4|Fhf4|Tg(tetO-MAPT*P301L)4510Kha|mFHF-4(1B)	fibroblast growth factor 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80457581-2	chr15	80457081	80458081	+	743.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163189, intron 5 of 5)	RMER1A|Other|Other	-18978.0	NR_155274	102633578.0	Mm.397484	NR_155274	ENSMUSG00000115888	Gm31369	-	predicted gene, 31369	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112643683-2	chr12	112643183	112644183	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-1145.0	NM_001161737	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27855011-2	chr15	27854511	27855511	+	743.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081302, exon 13 of 57)	exon (NM_001081302, exon 13 of 57)	170837.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25876767-2	chr17	25876267	25877267	+	743.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001100454)	TTS (NM_001100454)	1267.0	NM_026686	68347.0	Mm.35098	NM_026686	ENSMUSG00000025731	Mettl26	0610011F06Rik	methyltransferase like 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72342072-2	chr8	72341572	72342572	+	743.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289859, intron 21 of 21)	intron (NM_001289859, intron 21 of 21)	23010.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	0.0	1.5	2.5	0.0	6.0	2.0
Merged-chr1-171115644-2	chr1	171115144	171116144	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6017.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110357730-4	chr5	110357226	110358226	+	743.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12996.0	NM_001310709	381667.0	Mm.332572	NM_001033459	ENSMUSG00000072754	Lrcol1	Clpsl3|Gm1679	leucine rich colipase-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-93494186-3	chr3	93493681	93494681	+	743.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25427.0	NM_027762	71325.0	Mm.68064	NM_027762	ENSMUSG00000027908	Tchhl1	5430400H23Rik|AA589420|S100a17|Thhl1	trichohyalin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153155080-2	chr2	153154580	153155580	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	U6|snRNA|snRNA	-6221.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.0	0.5	0.5	4.0	0.0	3.0
Merged-chr1-139007709-4	chr1	139007217	139008217	+	743.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	30060.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153895182-4	chr1	153894693	153895693	+	743.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3547.0	NM_178244	240819.0	Mm.453236	NM_178244	ENSMUSG00000047053	Teddm1a	Epdd1|Teddm1|e9-1	transmembrane epididymal protein 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-119152705-4	chr10	119152218	119153218	+	743.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59813.0	NR_045348	73400.0	Mm.416864	NR_045348	ENSMUSG00000100681	1700064J06Rik	-	RIKEN cDNA 1700064J06 gene	ncRNA	0.0	1.5	0.0	1.0	4.5	1.0
Merged-chr8-120576494-3	chr8	120575987	120576987	+	743.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198671, exon 14 of 16)	exon (NM_198671, exon 14 of 16)	12588.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42487083-4	chr10	42486580	42487580	+	743.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8515.0	NM_145743	215951.0	Mm.89646	NM_145743	ENSMUSG00000038302	Afg1l	CG8520|Lace1	AFG1 like ATPase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120725352-3	chr8	120724808	120725808	+	743.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11050.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-41615532-2	chr5	41615030	41616030	+	743.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92161.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	0.5	5.5	2.5	4.5	0.0	0.5
Merged-chr11-118231149-2	chr11	118230649	118231649	+	743.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	B4A|SINE|B4	17443.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59735875-2	chr15	59735375	59736375	+	743.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	59084.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.0	0.0	0.0	5.5	1.5	0.5
Merged-chr5-52461839-3	chr5	52461280	52462280	+	743.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_001256059, intron 1 of 11)	URR1B|DNA|hAT-Charlie	9763.0	NM_001256059	100503884.0	Mm.332379	NM_001256059	ENSMUSG00000045790	Ccdc149	Gm447	coiled-coil domain containing 149	protein-coding	10.0	0.0	18.0	11.0	5.5	9.5
Merged-chr9-64806485-4	chr9	64806027	64807027	+	743.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4484.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106785572-2	chr11	106785072	106786072	+	743.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355676, intron 6 of 13)	intron (NM_001355676, intron 6 of 13)	-2813.0	NR_037224	100526469.0		NR_037224	ENSMUSG00000093273	Mir3064	mir-3064|mmu-mir-3064	microRNA 3064	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-60730523-2	chr19	60730023	60731023	+	743.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25464.0	NM_178421	332397.0	Mm.186390	NM_178421	ENSMUSG00000072437	Nanos1	NOS-1	nanos C2HC-type zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr19-43614661-2	chr19	43614161	43615161	+	743.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_008699, exon 2 of 2)	exon (NM_008699, exon 2 of 2)	2336.0	NM_008699	18089.0	Mm.56994	NM_008699	ENSMUSG00000044220	Nkx2-3	Nkx-2.3|Nkx2.3|tinman	NK2 homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr19-6283206-3	chr19	6282748	6283748	+	743.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	6352.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-129584932-3	chr5	129584429	129585429	+	743.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011846, intron 1 of 9)	CpG	760.0	NM_011846	23948.0	Mm.42047	NM_011846	ENSMUSG00000029436	Mmp17	MT4-MMP|MT4MMP|MTMMP4	matrix metallopeptidase 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32907433-3	chr19	32906933	32907933	+	743.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E2|LTR|ERVL-MaLR	149856.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-101812670-3	chr3	101812147	101813147	+	743.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172295)	TTS (NM_172295)	23576.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29821152-3	chr19	29820658	29821658	+	743.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8184.0	NM_177721	240614.0	Mm.125503	NM_177721	ENSMUSG00000074909	Ranbp6	C630001B19	RAN binding protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100731298-3	chr7	100730826	100731826	+	743.299988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178764, intron 2 of 8)	intron (NM_178764, intron 2 of 8)	24691.0	NM_001362170	319604.0	Mm.260362	NM_178764	ENSMUSG00000029461	Fam168a	2610030B18Rik|B930006L02Rik|mKIAA0280	family with sequence similarity 168, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3328131-2	chr19	3327631	3328631	+	743.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 1 of 18)	intron (NM_013495, intron 1 of 18)	4830.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-99162378-2	chr11	99161934	99162934	+	743.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7357.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3915813-2	chr19	3915313	3916313	+	743.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_026316, intron 8 of 9)	intron (NM_026316, intron 8 of 9)	-3039.0	NM_001271444	225887.0	Mm.44227	NM_144870	ENSMUSG00000059734	Ndufs8	BC021616|CI-23kD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132383128-2	chr4	132382628	132383628	+	743.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161797, intron 3 of 12)	intron (NM_001161797, intron 3 of 12)	-29442.0	NR_003270	399101.0	Mm.486919	NR_002904	ENSMUSG00000085241	Snhg3	Rnu17d|U17HG	small nucleolar RNA host gene 3	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-189688820-2	chr1	189688293	189689293	+	743.25	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_001081363)	promoter-TSS (NM_001081363)	-707.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	9.0	9.0	5.0	2.5	30.5	16.0
Merged-chr6-15847125-2	chr6	15846625	15847625	+	743.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	126464.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167463171-2	chr2	167462671	167463671	+	743.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304542, intron 9 of 15)	intron (NM_001304542, intron 9 of 15)	-29474.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103409210-3	chr11	103408740	103409740	+	743.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 1 of 11)	intron (NM_183034, intron 1 of 11)	3424.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	12.5	2.5	5.0	0.5	5.5	16.0
Merged-chr2-93588269-3	chr2	93587769	93588769	+	743.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54165.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78096801-3	chr10	78096300	78097300	+	743.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27432.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59848273-3	chr13	59847767	59848767	+	743.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-25120.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	12.0	6.5	2.5	0.0	8.5	1.5
Merged-chr8-120766849-3	chr8	120766355	120767355	+	743.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28216.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-42398469-4	chr6	42397991	42398991	+	743.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1747.0	NM_001001452	387514.0	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132729073-2	chr7	132728573	132729573	+	743.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347630, intron 3 of 3)	intron (NM_001347630, intron 3 of 3)	47843.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126154931-2	chr7	126154431	126155431	+	743.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 6 of 23)	intron (NM_028816, intron 6 of 23)	45570.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127914344-2	chr3	127913879	127914879	+	743.166626	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-1792.0	NR_040552	329753.0	Mm.119720	NR_040552	ENSMUSG00000104763	9830132P13Rik	9830132P13	RIKEN cDNA 9830132P13 gene	ncRNA	2.0	4.0	5.0	4.0	10.0	2.5
Merged-chr12-72520756-4	chr12	72520242	72521242	+	743.145813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15615.0	NM_026327	67708.0	Mm.11233	NM_026327	ENSMUSG00000034501	Pcnx4	1810048J11Rik|4932413O10|AU017192|Pcnxl4	pecanex homolog 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55692097-2	chr13	55691597	55692597	+	743.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1027.0	NM_181278	78521.0	Mm.28449	NM_181278	ENSMUSG00000045767	B230219D22Rik	AA119856|D530037I19Rik	RIKEN cDNA B230219D22 gene	protein-coding	0.0	0.0	0.0	4.0	0.0	1.0
Merged-chr1-65185769-4	chr1	65185280	65186280	+	743.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011086)	promoter-TSS (NM_011086)	699.0	NM_001111320	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103388722-4	chr15	103388204	103389204	+	743.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21913.0	NM_001314041	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66635263-2	chr14	66634853	66635853	+	743.099976	f0_balb.idr|f1_balb.idr	5' UTR (NM_001271761, exon 1 of 3)	5' UTR (NM_001271761, exon 1 of 3)	102.0	NM_001271760	11549.0	Mm.57064	NM_013461	ENSMUSG00000045875	Adra1a	Adra1c	adrenergic receptor, alpha 1a	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr17-28485486-5	chr17	28484873	28485873	+	743.090027	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 1 of 10)	RSINE1|SINE|B4	776.0	NM_010220	14229.0	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-93988689-3	chr11	93988170	93989170	+	743.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7421.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	2.0	57.0	23.5	12.5	70.0	44.5
Merged-chr5-105649950-5	chr5	105649473	105650473	+	743.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49996.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	18.0	59.0	31.0	3.0	28.5	8.0
Merged-chr17-24887633-4	chr17	24887151	24888151	+	743.0625	f1_balb.idr|f1_c57bl6.idr	intron (NM_027141, intron 1 of 6)	intron (NM_027141, intron 1 of 6)	170.0	NM_027141	79043.0	Mm.274794	NM_027141	ENSMUSG00000024160	Spsb3	2310012N15Rik|3300001M01Rik|SSB3|Tce1|mKIAA4204	splA/ryanodine receptor domain and SOCS box containing 3	protein-coding	17.0	45.0	11.0	1.0	30.0	17.5
Merged-chr9-65522877-4	chr9	65522310	65523310	+	743.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57277.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-103179755-2	chr9	103179255	103180255	+	743.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173781, intron 7 of 7)	intron (NM_173781, intron 7 of 7)	22310.0	NM_009275	20818.0	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53153372-1	chr18	53152872	53153872	+	743.0	f0_c57.idr	Intergenic	Lx7|LINE|L1	-22920.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	23.5	12.5	31.5	9.0	2.5	10.0
Merged-chr10-81366939-2	chr10	81366439	81367439	+	743.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019757)	TTS (NM_019757)	-1119.0	NM_001014836	432479.0	Mm.440450	NM_001014836	ENSMUSG00000020234	4930404N11Rik	2210409H10Rik|5730551K18Rik|AI854616	RIKEN cDNA 4930404N11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104383716-2	chr8	104383216	104384216	+	743.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153582, intron 1 of 3)	intron (NM_153582, intron 1 of 3)	12091.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-32975475-2	chr14	32974975	32975975	+	743.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146022, intron 49 of 58)	intron (NM_001146022, intron 49 of 58)	-15907.0	NM_001146021	67580.0	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150816776-2	chr2	150816276	150817276	+	743.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153781, exon 10 of 20)	exon (NM_153781, exon 10 of 20)	25794.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-116330643-2	chr10	116330143	116331143	+	743.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029928, intron 8 of 31)	intron (NM_029928, intron 8 of 31)	29269.0	NM_029928	19263.0	Mm.37213	NM_029928	ENSMUSG00000020154	Ptprb	3230402H02Rik|C130094E24|Ptpz|Rptpb|VE-PTP|Veptp	protein tyrosine phosphatase, receptor type, B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122023552-2	chr14	122023052	122024052	+	743.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11122.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116599218-2	chr3	116598718	116599718	+	743.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030016, intron 1 of 11)	B4A|SINE|B4	4260.0	NM_001289571	72776.0	Mm.440836	NM_028349	ENSMUSG00000027959	Sass6	2810453L12Rik	SAS-6 centriolar assembly protein	protein-coding	0.0	0.5	3.0	3.0	1.5	3.5
Merged-chr17-56461738-2	chr17	56461238	56462238	+	743.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252455, intron 1 of 27)	intron (NM_001252455, intron 1 of 27)	483.0	NM_001252456	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23575274-2	chr13	23574774	23575774	+	743.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178204)	promoter-TSS (NM_178204)	-489.0	NM_178204	319149.0	Mm.347699	NM_178204	ENSMUSG00000099583	Hist1h3d	H3-b	histone cluster 1, H3d	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63411347-2	chr4	63410847	63411847	+	743.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7902.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-113404691-2	chr7	113404191	113405191	+	743.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16118.0	NM_020623	19226.0	Mm.284168	NM_020623	ENSMUSG00000059077	Pth	Pthp	parathyroid hormone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104724548-1	chr9	104724048	104725048	+	743.0	f0_balb.idr	intron (NM_028719, intron 2 of 15)	ORR1E|LTR|ERVL-MaLR	155065.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	2.0	0.0	6.5	10.0	4.0	7.5
Merged-chr11-3931684-1	chr11	3931184	3932184	+	743.0	f0_balb.idr	intron (NM_001130458, intron 1 of 9)	intron (NM_001130458, intron 1 of 9)	277.0	NM_001130459	21452.0	Mm.20948	NM_015749	ENSMUSG00000020432	Tcn2	AW208754|Tcn-2	transcobalamin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122882131-3	chr8	122881620	122882620	+	743.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33746.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	2.5	0.5	0.0	2.5	3.0	0.0
Merged-chr2-31765692-3	chr2	31765198	31766198	+	743.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	5525.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24444190-2	chr13	24443690	24444690	+	743.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111110, intron 11 of 16)	intron (NM_001111110, intron 11 of 16)	29068.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36578092-1	chr15	36577592	36578592	+	743.0	f0_balb.idr	Intergenic	L1MB8|LINE|L1	-22519.0	NM_025712	66696.0	Mm.253627	NM_025712	ENSMUSG00000013611	Snx31	4631426E05Rik	sorting nexin 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-26331411-3	chr11	26330900	26331900	+	743.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55684.0	NM_025923	67030.0	Mm.18875	NM_025923	ENSMUSG00000004018	Fancl	2010322C19Rik|AW554273|B230118H11Rik|Phf9|Pog|gcd	Fanconi anemia, complementation group L	protein-coding	0.5	2.0	0.0	0.0	0.0	0.0
Merged-chr11-50245829-2	chr11	50245329	50246329	+	743.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-7297.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-55166899-3	chr9	55166403	55167403	+	743.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346657, intron 2 of 11)	intron (NM_001346657, intron 2 of 11)	16820.0	NM_001346658	109161.0	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57773025-2	chr15	57772525	57773525	+	743.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 2 of 3)	Tigger9b|DNA|TcMar-Tigger	78358.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-34808331-4	chr12	34807830	34808830	+	743.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	108765.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	5.0	5.5	2.0	4.5	7.0	5.5
Merged-chr9-65684530-1	chr9	65684030	65685030	+	743.0	f1_c57bl6.idr	intron (NM_001301307, intron 1 of 4)	intron (NM_001301307, intron 1 of 4)	7982.0	NM_001301307	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	0.0	0.5	4.0	0.0	0.0	0.0
Merged-chr11-118574674-2	chr11	118574174	118575174	+	743.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285436, intron 3 of 13)	intron (NM_001285436, intron 3 of 13)	97842.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134246517-1	chr4	134246017	134247017	+	743.0	f1_c57bl6.idr	promoter-TSS (NM_024215)	promoter-TSS (NM_024215)	-926.0	NM_024215	68040.0	Mm.300404	NM_024215	ENSMUSG00000028840	Zfp593	3110024A21Rik|AV062409|E130106C14Rik|ZNF593	zinc finger protein 593	protein-coding	4.0	0.5	5.5	0.0	1.5	2.0
Merged-chr15-68364468-2	chr15	68363968	68364968	+	743.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23179.0	NR_029718	387228.0		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95608470-2	chr16	95607970	95608970	+	743.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31A_Mm|LTR|ERVK	-21877.0	NM_001302152	13876.0	Mm.164531	NM_133659	ENSMUSG00000040732	Erg	D030036I24Rik	ETS transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38249255-2	chr18	38248755	38249755	+	743.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024179)	promoter-TSS (NM_024179)	943.0	NR_015475	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	13.0	22.0	18.5	22.5	28.5	16.0
Merged-chr9-44468156-2	chr9	44467656	44468656	+	743.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13389.0	NM_009476	22269.0	Mm.4453	NM_009476	ENSMUSG00000041523	Upk2	AW491716|UPII	uroplakin 2	protein-coding	4.5	5.5	16.0	2.0	5.5	15.5
Merged-chr18-36366712-2	chr18	36366212	36367212	+	743.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081365, exon 2 of 3)	exon (NM_001081365, exon 2 of 3)	18088.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-153873674-1	chr4	153873174	153874174	+	743.0	f0_balb.idr	Intergenic	Intergenic	76802.0	NR_040670	407793.0	Mm.260950	NR_040670		BC039966	-	cDNA sequence BC039966	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83568644-2	chr17	83568144	83569144	+	743.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54311.0	NM_001159529	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45127260-2	chr7	45126760	45127760	+	743.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_000003)	promoter-TSS (NR_000003)	203.0	NR_000002	27209.0		NR_000002	ENSMUSG00000065219	Snord32a	Rnu32|Rnu32a|U32|U32A	small nucleolar RNA, C/D box 32A	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24048791-3	chr2	24048291	24049291	+	743.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_080462, exon 2 of 7)	exon (NM_080462, exon 2 of 7)	588.0	NM_080462	140483.0	Mm.33120	NM_080462	ENSMUSG00000026986	Hnmt	1500031F01Rik|AI788969	histamine N-methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-21784575-2	chr12	21784075	21785075	+	743.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-367139.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-18693054-1	chr8	18692554	18693554	+	743.0	f1_balb.idr	intron (NM_007426, intron 8 of 8)	intron (NM_007426, intron 8 of 8)	48508.0	NM_007426	11601.0	Mm.439874	NM_007426	ENSMUSG00000031465	Angpt2	Agpt2|Ang-2|Ang2	angiopoietin 2	protein-coding	0.5	6.0	2.0	1.0	1.5	10.5
Merged-chr5-66082365-2	chr5	66081865	66082865	+	743.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	15814.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	6.0	10.0	2.5	0.5	4.0	2.0
Merged-chr13-103918600-3	chr13	103918101	103919101	+	743.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005868, intron 1 of 26)	intron (NM_001005868, intron 1 of 26)	1985.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22656603-2	chr8	22656103	22657103	+	743.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	-3166.0	NM_011130	18970.0	Mm.123211	NM_011130	ENSMUSG00000031536	Polb	A430088C08Rik	polymerase (DNA directed), beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180432391-2	chr2	180431891	180432891	+	743.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23854.0	NM_001355218	108115.0	Mm.133687	NM_148933	ENSMUSG00000038963	Slco4a1	OATP-E|Slc21a12	solute carrier organic anion transporter family, member 4a1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42539945-2	chr19	42539445	42540445	+	743.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177464, intron 1 of 6)	intron (NM_177464, intron 1 of 6)	21140.0	NM_177464	52013.0	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	2.0	0.0	0.0	3.0	0.0	0.0
Merged-chr1-190978727-2	chr1	190978227	190979227	+	743.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_144879, exon 1 of 8)	5' UTR (NM_144879, exon 1 of 8)	271.0	NM_144879	226841.0	Mm.22856	NM_144879	ENSMUSG00000037568	Vash2	B130052G07Rik	vasohibin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12917978-2	chr13	12917478	12918478	+	743.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87352.0	NM_031191	18811.0	Mm.88796	NM_031191	ENSMUSG00000079092	Prl2c2	Ghd2|MRP-1|PLF-1|Plf|Plf1	prolactin family 2, subfamily c, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-56012136-2	chr12	56011636	56012636	+	743.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	175770.0	NR_155205	52592.0	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126437281-2	chr4	126436781	126437781	+	743.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001317173, exon 19 of 19)	3' UTR (NM_001317173, exon 19 of 19)	-7739.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-97001275-2	chr5	97000733	97001733	+	743.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 1 of 15)	intron (NM_080708, intron 1 of 15)	3544.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	7.5	10.5	19.0	7.0	15.0	18.5
Merged-chr1-37263775-2	chr1	37263275	37264275	+	743.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009918)	TTS (NM_009918)	-36063.0	NM_030266	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29291403-2	chr17	29290903	29291903	+	743.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030561, intron 4 of 8)	intron (NM_030561, intron 4 of 8)	22615.0	NM_030561	80748.0	Mm.290116	NM_030561	ENSMUSG00000052712	BC004004	2400006G15Rik	cDNA sequence BC004004	protein-coding	2.0	2.5	0.0	2.0	2.5	0.0
Merged-chr1-86354921-2	chr1	86354421	86355421	+	743.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010880, intron 7 of 13)	intron (NM_010880, intron 7 of 13)	1406.0	NR_002851	80828.0		NR_002851	ENSMUSG00000064823	Snord82	Rnu82|U82|Z25	small nucleolar RNA, C/D box 82	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106396507-2	chr1	106396007	106397007	+	743.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150124.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79368414-3	chr11	79367908	79368908	+	743.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010897, intron 1 of 57)	MLT-int|LTR|ERVL-MaLR	28516.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	9.0	9.5	17.0	4.0	6.5	10.5
Merged-chr11-115688200-2	chr11	115687700	115688700	+	743.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	ORR1A4|LTR|ERVL-MaLR	11334.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130225257-2	chr5	130224757	130225757	+	743.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027854, intron 1 of 6)	B2_Mm1t|SINE|B2	2922.0	NM_027854	71667.0	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117378787-2	chr10	117378287	117379287	+	743.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1814.0	NM_001310609	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	0.0	0.0	0.0	0.0	1.5	0.0
Merged-chr7-35057772-2	chr7	35057272	35058272	+	743.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1206.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-13865505-2	chr6	13865005	13866005	+	743.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	6013.0	NM_001352887	66520.0	Mm.29615	NM_183258		2610001J05Rik	C79299	RIKEN cDNA 2610001J05 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173023569-2	chr2	173023069	173024069	+	743.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019547, intron 3 of 3)	intron (NM_019547, intron 3 of 3)	1667.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	0.0	0.0	1.5	0.0	0.0	5.5
Merged-chr1-149923842-3	chr1	149923352	149924352	+	743.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 2 of 17)	intron (NM_008869, intron 2 of 17)	-1413.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30430246-1	chr7	30429746	30430746	+	743.0	f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	6971.0	NM_172142	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	4.5	11.0	23.5	4.5	1.0	4.0
Merged-chr11-3126765-1	chr11	3126265	3127265	+	743.0	f1_c57bl6.idr	intron (NR_003517, intron 2 of 6)	intron (NR_003517, intron 2 of 6)	2744.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69688267-2	chr11	69687767	69688767	+	743.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011614, intron 5 of 6)	intron (NM_011614, intron 5 of 6)	-2713.0	NM_023517	69583.0	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85279669-3	chr12	85279187	85280187	+	742.977783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025421, intron 2 of 2)	(CAAAA)n|Simple_repeat|Simple_repeat	748.0	NM_025421	66204.0	Mm.311985	NM_025421	ENSMUSG00000008822	Acyp1	1110039O14Rik|AI325944	acylphosphatase 1, erythrocyte (common) type	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-124803080-4	chr4	124802541	124803541	+	742.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008636, intron 1 of 10)	intron (NM_008636, intron 1 of 10)	492.0	NM_008636	17764.0	Mm.272397	NM_008636	ENSMUSG00000028890	Mtf1	MTF-1|Thyls	metal response element binding transcription factor 1	protein-coding	20.5	15.5	14.5	2.5	27.5	26.0
Merged-chr5-139466567-3	chr5	139466056	139467056	+	742.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-6022.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82165502-3	chr15	82164998	82165998	+	742.93335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033218, intron 1 of 18)	B3|SINE|B2	18229.0	NM_033218	20788.0	Mm.38016	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75798459-3	chr10	75797950	75798950	+	742.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358778)	promoter-TSS (NM_001358778)	134.0	NM_008185	14871.0	Mm.2746	NM_008185	ENSMUSG00000001663	Gstt1	AI255817|Gstt1-1	glutathione S-transferase, theta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-63952246-4	chr11	63951771	63952771	+	742.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-11955.0	NR_131111	78883.0	Mm.410764	NR_131111	ENSMUSG00000086359	9630013K17Rik	-	RIKEN cDNA 9630013K17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-131246848-2	chr6	131246339	131247339	+	742.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008462, intron 1 of 7)	RSINE1|SINE|B4	523.0	NM_001170851	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	40.0	74.5	86.5	42.5	124.5	115.0
Merged-chr10-69351339-4	chr10	69350834	69351834	+	742.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007659, intron 1 of 7)	MTC|LTR|ERVL-MaLR	1578.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107571633-2	chr9	107571133	107572133	+	742.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010489, intron 3 of 3)	intron (NM_010489, intron 3 of 3)	2470.0	NM_010489	15587.0	Mm.4834	NM_010489	ENSMUSG00000010047	Hyal2	AI256841|AU020858|AW555733	hyaluronoglucosaminidase 2	protein-coding	1.5	4.5	14.5	4.5	8.0	5.0
Merged-chr14-16538389-3	chr14	16537875	16538875	+	742.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289760, intron 4 of 9)	L1_Mus1|LINE|L1	37101.0	NM_011243	218772.0	Mm.259318	NM_011243	ENSMUSG00000017491	Rarb	A830025K23|Hap|Nr1b2	retinoic acid receptor, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44465573-3	chr10	44465092	44466092	+	742.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6844.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31019709-3	chr17	31019200	31020200	+	742.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37994.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137815671-3	chr4	137815170	137816170	+	742.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-19286.0	NM_007431	11647.0	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	9.0	5.5	3.0	2.5	3.5	2.5
Merged-chr5-136933431-3	chr5	136932918	136933918	+	742.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015555, intron 3 of 3)	(ACGTG)n|Simple_repeat|Simple_repeat	14272.0	NR_015555	66752.0	Mm.135764	NR_015555	ENSMUSG00000097908	4933404O12Rik	AW494809	RIKEN cDNA 4933404O12 gene	ncRNA	2.0	5.0	6.0	2.0	0.0	8.0
Merged-chr5-64322566-2	chr5	64322100	64323100	+	742.875	f0_balb.idr|f1_balb.idr	intron (NM_001289514, intron 13 of 18)	Lx7|LINE|L1	92243.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	13.0	14.0	17.0	6.0	15.5	9.5
Merged-chr11-103098714-2	chr11	103098214	103099214	+	742.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_152813, intron 1 of 14)	MIR|SINE|MIR	2944.0	NM_152813	72469.0	Mm.264743	NM_152813	ENSMUSG00000020937	Plcd3	2610205J15Rik|mKIAA1964	phospholipase C, delta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-183936453-2	chr1	183935942	183936942	+	742.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97556.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	0.5	4.5	4.5	0.0	0.0	2.0
Merged-chr8-117306796-2	chr8	117306296	117307296	+	742.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-42374.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70651601-2	chr11	70651101	70652101	+	742.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027445)	TTS (NM_027445)	3049.0	NM_011072	18643.0	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73123552-2	chr14	73123052	73124052	+	742.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-18958.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17676644-4	chr10	17676138	17677138	+	742.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46590.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127948492-2	chr3	127947981	127948981	+	742.833313	f1_balb.idr|f1_c57bl6.idr	intron (NR_040552, intron 4 of 4)	intron (NR_040552, intron 4 of 4)	32310.0	NR_040552	329753.0	Mm.119720	NR_040552	ENSMUSG00000104763	9830132P13Rik	9830132P13	RIKEN cDNA 9830132P13 gene	ncRNA	3.0	0.0	0.5	2.0	0.5	2.0
Merged-chr2-103719099-3	chr2	103718596	103719596	+	742.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178890)	TTS (NM_178890)	42174.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	0.0	2.5	3.0	0.0	2.5	2.5
Merged-chr11-74484175-3	chr11	74483687	74484687	+	742.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 3 of 24)	intron (NM_001015046, intron 3 of 24)	105971.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-20880002-2	chr5	20879502	20880502	+	742.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_172992, intron 1 of 17)	B1_Mus1|SINE|Alu	2122.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107797009-3	chr13	107796529	107797529	+	742.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	MTD|LTR|ERVL-MaLR	93035.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-36746143-2	chr8	36745687	36746687	+	742.799988	f0_balb.idr|f1_balb.idr	intron (NM_001194940, intron 5 of 17)	intron (NM_001194940, intron 5 of 17)	-13133.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	10.5	4.0	4.5	3.0	12.5	7.0
Merged-chr4-102569223-3	chr4	102568727	102569727	+	742.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177980)	promoter-TSS (NM_001177980)	-833.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-60765327-3	chr14	60764846	60765846	+	742.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310594)	TTS (NM_001310594)	-2788.0	NM_183175	239126.0	Mm.319636	NM_183175	ENSMUSG00000071347	C1qtnf9	9130217G22Rik|CTRP9|Ciqtnf9	C1q and tumor necrosis factor related protein 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-33189228-6	chr4	33188761	33189761	+	742.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001034867, exon 1 of 7)	exon (NM_001034867, exon 1 of 7)	476.0	NM_001034867	242377.0	Mm.372465	NM_001034867	ENSMUSG00000054659	Pm20d2	Acy1l2|Gm424	peptidase M20 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-46929499-3	chr13	46928982	46929982	+	742.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010617, intron 1 of 37)	CpG	236.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36602857-3	chr16	36602359	36603359	+	742.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40725.0	NM_013803	12374.0	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21348261-2	chr5	21347761	21348761	+	742.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	-24412.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115546655-2	chr6	115546155	115547155	+	742.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_199033, intron 1 of 11)	intron (NM_199033, intron 1 of 11)	1951.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-142752200-4	chr6	142751700	142752700	+	742.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-4486.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83078673-4	chr17	83078125	83079125	+	742.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045094)	promoter-TSS (NR_045094)	-400.0	NR_045094	100503434.0	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-44392873-3	chr18	44392378	44393378	+	742.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027490, intron 1 of 10)	intron (NM_027490, intron 1 of 10)	12378.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	2.5	5.0	3.5	21.0	20.0	15.0
Merged-chr18-36508648-3	chr18	36508175	36509175	+	742.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010415, intron 3 of 5)	intron (NM_010415, intron 3 of 5)	7130.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135681499-3	chr3	135680993	135681993	+	742.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 1 of 24)	intron (NM_008689, intron 1 of 24)	10054.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34785955-2	chr2	34785455	34786455	+	742.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_145522, intron 4 of 7)	(CACAG)n|Simple_repeat|Simple_repeat	13865.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-109541838-3	chr7	109541286	109542286	+	742.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001326, intron 6 of 19)	intron (NM_001001326, intron 6 of 19)	21654.0	NR_028079	100302499.0	Mm.482651	NR_028079	ENSMUSG00000065016	Snora3	MBI-28	small nucleolar RNA, H/ACA box 3	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-10301990-3	chr3	10301486	10302486	+	742.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029310)	promoter-TSS (NM_029310)	-803.0	NM_029310	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64342830-1	chr5	64342330	64343330	+	742.666687	f1_balb.idr	intron (NM_001289514, intron 17 of 18)	intron (NM_001289514, intron 17 of 18)	112473.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	127.5	390.5	268.0	106.0	205.0	167.5
Merged-chr18-35529919-2	chr18	35529419	35530419	+	742.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23491.0	NR_038073	100503380.0	Mm.482118	NR_038073	ENSMUSG00000097769	Snhg4	Gm17457	small nucleolar RNA host gene 4	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107774085-2	chr3	107773513	107774513	+	742.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-13544.0	NM_001113529	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	0.0	0.0	2.0	2.0	0.0	2.0
Merged-chr2-38825317-2	chr2	38824817	38825817	+	742.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010264, intron 3 of 10)	intron (NM_010264, intron 3 of 10)	-27418.0	NR_029568	387176.0		NR_029568	ENSMUSG00000065423	Mir181a-2	Mirn181|Mirn181a|Mirn181a-2|miR-181|mir-181a|mir-181a-2	microRNA 181a-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-8459347-3	chr16	8458834	8459834	+	742.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11479.0	NM_146247	239706.0	Mm.214953	NM_146247	ENSMUSG00000039345	Mettl22	-	methyltransferase like 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-35178781-2	chr11	35178220	35179220	+	742.625	f0_c57.idr|f1_c57bl6.idr	intron (NM_011412, intron 3 of 35)	intron (NM_011412, intron 3 of 35)	57264.0	NM_011412	20564.0	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit guidance ligand 3	protein-coding	10.5	26.0	13.0	3.0	12.0	1.0
Merged-chr12-112670855-4	chr12	112670352	112671352	+	742.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331107, intron 2 of 13)	intron (NM_001331107, intron 2 of 13)	3424.0	NM_001165894	11651.0	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-133381246-2	chr2	133380746	133381746	+	742.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-170913.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-101555875-4	chr6	101555381	101556381	+	742.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-177984.0	NM_018884	55983.0	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-53436653-1	chr3	53436153	53437153	+	742.599976	f0_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	26605.0	NM_172501	212114.0	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	4.0	2.0	3.0	11.5	8.0	2.5
Merged-chr15-66930521-4	chr15	66930016	66931016	+	742.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008681, exon 16 of 16)	3' UTR (NM_008681, exon 16 of 16)	39123.0	NM_018865	22402.0	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-75312182-4	chr9	75311674	75312674	+	742.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010313, intron 2 of 12)	intron (NM_010313, intron 2 of 12)	-1894.0	NR_073186	14697.0	Mm.17604	NM_010313	ENSMUSG00000032192	Gnb5	GBS|Gbeta5|flr	guanine nucleotide binding protein (G protein), beta 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5092028-3	chr6	5091466	5092466	+	742.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 6 of 15)	intron (NM_181595, intron 6 of 15)	101980.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119387620-2	chr11	119387120	119388120	+	742.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_1C-LTR_Mm|LTR|ERVK	-2852.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120031779-2	chr1	120031254	120032254	+	742.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001012322, intron 4 of 13)	intron (NM_001012322, intron 4 of 13)	24774.0	NM_001012322	319229.0	Mm.189223	NM_001012322	ENSMUSG00000026387	Sctr	6530402O03Rik	secretin receptor	protein-coding	0.0	3.5	10.0	2.0	1.0	5.5
Merged-chr16-76222917-2	chr16	76222417	76223417	+	742.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100304.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27333400-2	chr7	27332900	27333900	+	742.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001310678, exon 1 of 23)	exon (NM_001310678, exon 1 of 23)	248.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72176882-2	chr8	72176382	72177382	+	742.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023126, intron 6 of 7)	intron (NM_023126, intron 6 of 7)	-12786.0	NM_197944	209488.0	Mm.157431	NM_197944	ENSMUSG00000062007	Hsh2d	ALX|Hsh2	hematopoietic SH2 domain containing	protein-coding	0.0	0.0	1.5	0.0	6.0	0.5
Merged-chr4-99386937-3	chr4	99386437	99387437	+	742.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	192790.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101961435-2	chr5	101960935	101961935	+	742.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 5 of 66)	intron (NM_172882, intron 5 of 66)	108486.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	7.0	17.0	2.0	5.0	4.0	2.5
Merged-chr3-137983990-2	chr3	137983490	137984490	+	742.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2441.0	NM_011932	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	0.0	0.0	4.0	3.5	7.5	1.5
Merged-chr3-115821863-2	chr3	115821363	115822363	+	742.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66196.0	NR_027894	68161.0	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	0.0	0.0	0.0	2.5	0.0	0.0
Merged-chr9-21174466-2	chr9	21173966	21174966	+	742.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183408, intron 1 of 14)	MT2B1|LTR|ERVL	8752.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84181952-2	chr12	84181452	84182452	+	742.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	12063.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-4028139-2	chr9	4027639	4028639	+	742.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR9D|LTR|ERVK	281355.0	NM_026276	67618.0	Mm.33970	NM_026276	ENSMUSG00000025894	Aasdhppt	2010309J24Rik|2810407B07Rik|AASD-PPT|CGI-80|LYS2|LYS5	aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64698646-2	chr17	64698146	64699146	+	742.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 12 of 21)	intron (NM_008549, intron 12 of 21)	-68465.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52724922-2	chr6	52724423	52725423	+	742.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355595, intron 2 of 16)	intron (NM_001355595, intron 2 of 16)	10758.0	NM_001355596	52440.0	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	4.5	0.0	0.0	0.0	0.0	0.0
Merged-chr5-91283233-1	chr5	91282733	91283733	+	742.5	f0_balb.idr	promoter-TSS (NR_040428)	promoter-TSS (NR_040428)	-157.0	NR_040428	100503265.0	Mm.125059	NR_040428	ENSMUSG00000107198	Gm19619	-	predicted gene, 19619	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-112727531-2	chr6	112727031	112728031	+	742.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_080448, exon 21 of 22)	exon (NM_080448, exon 21 of 22)	-30861.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158029377-2	chr2	158028877	158029877	+	742.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029282)	promoter-TSS (NM_029282)	880.0	NM_001291135	70470.0	Mm.290810	NM_027434	ENSMUSG00000027651	Rprd1b	2610304G08Rik|2810446G03Rik|Crept	regulation of nuclear pre-mRNA domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90592158-2	chr2	90591658	90592658	+	742.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-11511.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10861640-2	chr19	10861140	10862140	+	742.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133804, exon 8 of 11)	exon (NM_133804, exon 8 of 11)	8139.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	0.5	2.0	2.0	0.5	2.0	2.0
Merged-chr15-27660574-2	chr15	27660074	27661074	+	742.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 4 of 6)	intron (NM_198301, intron 4 of 6)	20968.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102707652-2	chr12	102707152	102708152	+	742.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-2783.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116604599-2	chr11	116604099	116605099	+	742.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167680, intron 6 of 18)	intron (NM_001167680, intron 6 of 18)	10912.0	NM_009591	11298.0	Mm.42233	NM_009591	ENSMUSG00000020804	Aanat	AA-NAT|Nat-2|Nat4|Snat	arylalkylamine N-acetyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-72782728-4	chr11	72782227	72783227	+	742.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001024926, exon 3 of 4)	exon (NM_001024926, exon 3 of 4)	13112.0	NM_001024926	192986.0	Mm.194755	NM_001024926	ENSMUSG00000057778	Cyb5d2	9330151E16Rik|Gm2	cytochrome b5 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36386432-2	chr18	36385932	36386932	+	742.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081365, intron 2 of 2)	intron (NM_001081365, intron 2 of 2)	37808.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18251515-2	chr16	18251015	18252015	+	742.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357146, intron 6 of 11)	intron (NM_001357146, intron 6 of 11)	2632.0	NM_001081000	15547.0	Mm.271798	NM_008307	ENSMUSG00000022721	Trmt2a	Htf9c	TRM2 tRNA methyltransferase 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-30609674-2	chr15	30609174	30610174	+	742.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	ORR1A2|LTR|ERVL-MaLR	-429452.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	34.0	43.0	33.0	26.0	49.0	28.0
Merged-chr14-55156026-2	chr14	55155526	55156526	+	742.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39091.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111540091-2	chr12	111539591	111540591	+	742.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033168)	promoter-TSS (NR_033168)	-855.0	NR_033168	100316932.0	Mm.484709	NR_033168	ENSMUSG00000064493	Snora28	MBI-13	small nucleolar RNA, H/ACA box 28	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77937549-2	chr18	77937049	77938049	+	742.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195633)	promoter-TSS (NM_001195633)	-918.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-3769598-1	chr13	3769098	3770098	+	742.5	f0_balb.idr	Intergenic	Intergenic	34720.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-149524694-2	chr5	149524194	149525194	+	742.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045423, intron 1 of 4)	intron (NR_045423, intron 1 of 4)	-3985.0	NM_029440	381693.0	Mm.136919	NM_029440	ENSMUSG00000029658	Wdr95	4930434E21Rik	WD40 repeat domain 95	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97780773-2	chr11	97780273	97781273	+	742.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_028078)	TTS (NR_028078)	993.0	NR_028078	100302498.0	Mm.453536	NR_028078	ENSMUSG00000064901	Snora21	MBI-3	small nucleolar RNA, H/ACA box 21	snoRNA	6.0	4.0	6.0	11.0	11.5	9.0
Merged-chr4-117863518-2	chr4	117863018	117864018	+	742.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008135, exon 6 of 14)	exon (NM_008135, exon 6 of 14)	8952.0	NM_001034876	381546.0	Mm.440118	NM_001034876	ENSMUSG00000078588	Ccdc24	Gm1028	coiled-coil domain containing 24	protein-coding	2.5	0.0	2.5	0.0	0.0	0.0
Merged-chr7-99876550-2	chr7	99876050	99877050	+	742.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164258, intron 6 of 18)	intron (NM_001164258, intron 6 of 18)	17332.0	NM_001164258	446101.0	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3361599-2	chr19	3361084	3362084	+	742.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 5 of 18)	B2_Mm2|SINE|B2	-27273.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr1-180776657-2	chr1	180776157	180777157	+	742.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36948.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-56686098-1	chr10	56685598	56686598	+	742.5	f0_balb.idr	Intergenic	Intergenic	254117.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94391815-2	chr11	94391315	94392315	+	742.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	1161.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	15.5	34.0	30.0	12.0	48.5	35.5
Merged-chr8-110629386-2	chr8	110628886	110629886	+	742.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151675, intron 1 of 17)	intron (NR_151675, intron 1 of 17)	10819.0	NR_151675	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74394946-1	chr17	74394446	74395446	+	742.5	f0_balb.idr	promoter-TSS (NM_144798)	promoter-TSS (NM_144798)	-662.0	NM_001252478	210148.0	Mm.243943	NM_144798	ENSMUSG00000024069	Slc30a6	9530029F08Rik|ZnT6	solute carrier family 30 (zinc transporter), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62544621-2	chr10	62544121	62545121	+	742.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-17176.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27538332-2	chr2	27537832	27538832	+	742.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23185.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80402793-2	chr10	80402293	80403293	+	742.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025650)	TTS (NM_025650)	-3262.0	NM_001306143	17192.0	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77752817-2	chr18	77752317	77753317	+	742.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERVK9E_I-int|LTR|ERVK	14982.0	NM_146089	225745.0	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100501335-2	chr7	100500841	100501841	+	742.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	7983.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	12.0	30.0	22.0	0.0	2.0	0.5
Merged-chr11-3879888-3	chr11	3879314	3880314	+	742.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	15312.0	NM_026150	67430.0	Mm.347950	NM_026150	ENSMUSG00000020434	4921536K21Rik	AV043724	RIKEN cDNA 4921536K21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129418134-4	chr6	129417634	129418634	+	742.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205363, intron 4 of 6)	intron (NM_001205363, intron 4 of 6)	9272.0	NM_001205364	232414.0	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91878990-2	chr16	91878490	91879490	+	742.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 28 of 38)	B3A|SINE|B2	52640.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134773504-3	chr4	134772994	134773994	+	742.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5490.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	5.5	1.0	0.0	5.5	1.0	0.0
Merged-chr2-119351049-3	chr2	119350556	119351556	+	742.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026929)	promoter-TSS (NM_026929)	-186.0	NM_026929	69065.0	Mm.35083	NM_026929	ENSMUSG00000027313	Chac1	1810008K03Rik	ChaC, cation transport regulator 1	protein-coding	9.0	0.0	1.0	6.0	4.0	0.5
Merged-chr7-83653390-3	chr7	83652903	83653903	+	742.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 13 of 18)	intron (NM_001360088, intron 13 of 18)	2092.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	5.5	20.5	3.5	5.0	21.5	5.0
Merged-chr14-66953332-3	chr14	66952834	66953834	+	742.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42126.0	NM_175498	239157.0	Mm.44358	NM_175498	ENSMUSG00000046204	Pnma2	A830049P17Rik|mKIAA0883	paraneoplastic antigen MA2	protein-coding	1.5	17.0	11.0	3.0	15.0	1.0
Merged-chr13-59728610-4	chr13	59728109	59729109	+	742.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177711, exon 4 of 4)	exon (NM_177711, exon 4 of 4)	3143.0	NM_177711	238663.0	Mm.444776	NM_177711	ENSMUSG00000043986	Spata31d1d	4932411G14Rik|Fam75d1d	spermatogenesis associated 31 subfamily D, member 1D	protein-coding	0.0	0.0	0.5	1.5	1.5	0.0
Merged-chr9-58204292-4	chr9	58203781	58204781	+	742.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161541)	promoter-TSS (NM_001161541)	38.0	NM_001161541	320563.0	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122987590-2	chr8	122987090	122988090	+	742.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	54694.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	4.5	6.0	10.5	4.5	6.0	10.5
Merged-chr8-26066613-4	chr8	26066147	26067147	+	742.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207659, intron 13 of 21)	intron (NM_207659, intron 13 of 21)	-15962.0	NR_110583	76604.0	Mm.437190	NR_110583	ENSMUSG00000085437	1700047A11Rik	4930554C15Rik	RIKEN cDNA 1700047A11 gene	ncRNA	33.5	47.0	19.5	6.5	40.5	17.5
Merged-chr16-4682968-2	chr16	4682468	4683468	+	742.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1102.0	NM_023646	83945.0	Mm.248337	NM_023646	ENSMUSG00000004069	Dnaja3	1200003J13Rik|1810053A11Rik|C81173|Tid-1|Tid1l	DnaJ heat shock protein family (Hsp40) member A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54788468-3	chr11	54787964	54788964	+	742.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178626)	promoter-TSS (NM_178626)	-761.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-70281196-3	chr10	70280689	70281689	+	742.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025807, intron 4 of 5)	MIRb|SINE|MIR	35913.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116427685-3	chr11	116427161	116428161	+	742.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-6433.0	NM_176902	319370.0	Mm.258466	NM_176902	ENSMUSG00000050628	Ubald2	1110014K08Rik|D030012E24Rik|Fam100b	UBA-like domain containing 2	protein-coding	15.5	1.5	9.5	9.0	4.5	9.0
Merged-chr10-82914287-3	chr10	82913785	82914785	+	742.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47659.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	0.0	4.0	4.5	6.0	0.0	2.5
Merged-chr17-70988766-2	chr17	70988266	70989266	+	742.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_023402, intron 1 of 3)	intron (NM_023402, intron 1 of 3)	1750.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122099662-2	chr10	122099154	122100154	+	742.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-2552.0	NM_153059	216395.0	Mm.236764	NM_153059	ENSMUSG00000034620	Tmem5	6330415D21Rik	transmembrane protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-8004626-3	chr9	8004098	8005098	+	742.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001171147)	promoter-TSS (NM_001171147)	-2.0	NM_001171147	22601.0	Mm.221992	NM_009534	ENSMUSG00000053110	Yap1	AI325207|Yap|Yap65|Yki|Yorkie	yes-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32020073-3	chr9	32019579	32020579	+	742.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-96057.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14208762-3	chr2	14208273	14209273	+	742.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081310, intron 3 of 3)	MIR|SINE|MIR	-20641.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65921895-3	chr18	65921417	65922417	+	742.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17172.0	NM_013833	19434.0	Mm.431047	NM_013833	ENSMUSG00000024518	Rax	7530406A22Rik|E130303K03Rik|Rx|ey-1|ey1	retina and anterior neural fold homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5778241-2	chr19	5777741	5778741	+	742.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A2|LTR|ERVK	-6822.0	NR_155264	78891.0	Mm.276063	NM_023912	ENSMUSG00000024941	Scyl1	2810011O19Rik|C85140|Ntkl|mdf|mfd|p105	SCY1-like 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52275810-6	chr13	52275287	52276287	+	742.311096	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	179046.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150073309-4	chr4	150072821	150073821	+	742.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4867.0	NR_029751	723848.0		NR_029751	ENSMUSG00000065493	Mir34a	Mirn34a|mir-34a|mmu-mir-34a	microRNA 34a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70021611-4	chr14	70021074	70022074	+	742.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 4 of 6)	intron (NM_028560, intron 4 of 6)	-55871.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68714505-4	chr10	68713987	68714987	+	742.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12B|LTR|ERVK	-9259.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62421279-3	chr9	62420778	62421778	+	742.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175484, exon 12 of 12)	3' UTR (NM_175484, exon 12 of 12)	79935.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11810602-3	chr19	11810092	11811092	+	742.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	8811.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	7.5	24.5	21.5	10.0	45.0	30.0
Merged-chr10-10470333-2	chr10	10469833	10470833	+	742.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	1981.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	103.5	254.5	136.5	87.5	163.0	93.5
Merged-chr11-68955119-2	chr11	68954619	68955619	+	742.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_177566, intron 1 of 15)	intron (NM_177566, intron 1 of 15)	1739.0	NM_177566	442801.0	Mm.376147	NM_177566	ENSMUSG00000052921	Arhgef15	D130071N09|D530030K12Rik|E5	Rho guanine nucleotide exchange factor (GEF) 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52676318-3	chr2	52675835	52676835	+	742.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285426)	promoter-TSS (NM_001285426)	-192.0	NM_001285426	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-72225094-3	chr11	72224592	72225592	+	742.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9500.0	NM_026068	67279.0	Mm.159496	NM_026068	ENSMUSG00000020801	Med31	3110004H13Rik|CGI-125|l11Jus15	mediator complex subunit 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-86830319-3	chr8	86829819	86830819	+	742.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54939.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	8.5	32.5	3.5	9.5	25.0	19.0
Merged-chr9-103996699-4	chr9	103996216	103997216	+	742.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5828.0	NM_028721	74025.0	Mm.479273	NM_028721	ENSMUSG00000032558	Nphp3	3632410F03Rik|AI550417|C230078J01|D330020E01Rik|pcy	nephronophthisis 3 (adolescent)	protein-coding	0.0	0.0	0.0	2.5	0.0	0.0
Merged-chr7-45413612-3	chr7	45413053	45414053	+	742.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198190)	promoter-TSS (NM_198190)	-142.0	NM_198190	78405.0	Mm.20344	NM_198190	ENSMUSG00000074121	Ntf5	2900040K06Rik|AI462899|NT-4|NT-5|NT4|NT4/5|Ntf-5|Ntf4	neurotrophin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52034443-6	chr13	52033945	52034945	+	742.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62296.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121036198-2	chr14	121035698	121036698	+	742.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_134082, intron 1 of 26)	CpG	624.0	NM_134082	223254.0	Mm.223980	NM_134082	ENSMUSG00000025555	Farp1	AW228844|BC030329|Cdep	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-41485810-2	chr12	41485293	41486293	+	742.142822	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001271709, exon 1 of 2)	5' UTR (NM_001271709, exon 1 of 2)	264.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101758750-3	chr11	101758265	101759265	+	742.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144831, intron 18 of 22)	intron (NM_144831, intron 18 of 22)	25809.0	NM_144831	217207.0	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-104509638-4	chr5	104509129	104510129	+	742.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166581, intron 1 of 1)	URR1B|DNA|hAT-Charlie	1277.0	NM_001166581	100042165.0	Mm.482189	NM_001166581	ENSMUSG00000079065	BC005561	-	cDNA sequence BC005561	protein-coding	20.5	15.0	4.5	11.0	10.0	6.0
Merged-chr1-105989014-4	chr1	105988501	105989501	+	742.075012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151625, intron 2 of 2)	intron (NR_151625, intron 2 of 2)	1281.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	41.5	80.5	50.5	34.5	65.5	36.5
Merged-chr8-25100431-4	chr8	25099960	25100960	+	742.075012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 1 of 11)	intron (NM_031257, intron 1 of 11)	1351.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53255956-4	chr15	53255450	53256450	+	742.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	90233.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64040070-3	chr13	64039554	64040554	+	742.011108	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49147.0	NM_008291	15487.0	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	10.5	7.5	12.0	23.0	17.5	16.0
Merged-chr9-64025227-2	chr9	64024727	64025727	+	742.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3168.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-4796027-2	chr9	4795527	4796527	+	742.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019691, exon 1 of 17)	5' UTR (NM_019691, exon 1 of 17)	207.0	NM_001113180	14802.0	Mm.209263	NM_019691	ENSMUSG00000025892	Gria4	GluA4|GluR-D|Glur-4|Glur4|Gluralpha4|spkw1	glutamate receptor, ionotropic, AMPA4 (alpha 4)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59770960-2	chr13	59770460	59771460	+	742.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153538)	TTS (NM_153538)	994.0	NR_015349	13996.0	Mm.490435	NR_015349		Etohd2	AW491659	ethanol decreased 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-151841081-2	chr4	151840581	151841581	+	742.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 1 of 23)	Tigger15a|DNA|TcMar-Tigger	20687.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-69854626-2	chr16	69854126	69855126	+	742.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17D|LTR|ERVK	9118.0	NM_173069	224318.0	Mm.212743	NM_173069	ENSMUSG00000063163	Speer2	SPEER-2	spermatogenesis associated glutamate (E)-rich protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120479672-2	chr11	120479172	120480172	+	742.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008244, exon 16 of 22)	exon (NM_008244, exon 16 of 22)	-4965.0	NM_027204	56282.0	Mm.133851	NM_027204	ENSMUSG00000039640	Mrpl12	0610034O11Rik|1500031N16Rik|L12mt|MRP-L12|Rpml12	mitochondrial ribosomal protein L12	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr15-34060887-1	chr15	34060387	34061387	+	742.0	f0_balb.idr	Intergenic	Intergenic	-21832.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0.0	0.0	2.5	0.0	4.5	1.0
Merged-chr8-26965327-2	chr8	26964827	26965827	+	742.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12009.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-74239445-2	chr5	74238945	74239945	+	742.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114660, intron 5 of 8)	intron (NM_001114660, intron 5 of 8)	44119.0	NM_026878	68939.0	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-121957139-2	chr2	121956639	121957639	+	742.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_212450, intron 1 of 12)	intron (NM_212450, intron 1 of 12)	-1047.0	NM_008545	17147.0	Mm.389349	NM_008545	ENSMUSG00000074881	Mageb3	Mage-b3|Mage-ps1|Mage-rs3|Smage3	melanoma antigen, family B, 3	protein-coding	12.5	55.5	31.5	28.5	33.5	33.5
Merged-chr11-115160706-2	chr11	115160200	115161200	+	742.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163753, exon 9 of 9)	exon (NM_001163753, exon 9 of 9)	-2641.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	1.5	7.0	3.5	1.5	0.0	5.0
Merged-chr10-128358996-2	chr10	128358496	128359496	+	742.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026444, intron 7 of 10)	intron (NM_026444, intron 7 of 10)	11041.0	NM_001081040	210582.0	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-96155953-2	chr12	96155453	96156453	+	742.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-108731.0	NR_103800	69423.0	Mm.46121	NM_027076		1700019M22Rik	-	NFX-like protein	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33184058-1	chr16	33183558	33184558	+	742.0	f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-1013.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-79031767-1	chr17	79031267	79032267	+	742.0	f1_c57bl6.idr	Intergenic	Intergenic	-10951.0	NM_029239	75292.0	Mm.252776	NM_029239	ENSMUSG00000024070	Prkd3	4930557O20Rik|5730497N19Rik|PKD3|Pkcnu|Prkcn	protein kinase D3	protein-coding	0.0	12.5	11.5	4.0	6.5	12.5
Merged-chr19-56547610-1	chr19	56547110	56548110	+	742.0	f0_balb.idr	promoter-TSS (NM_025811)	promoter-TSS (NM_025811)	512.0	NM_001360437	55947.0	Mm.2805	NM_018831	ENSMUSG00000025077	Dclre1a	2810043H12Rik|AU022226|Pso2|Smn1a|Snm1|mKIAA0086	DNA cross-link repair 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90213648-1	chr7	90213148	90214148	+	742.0	f0_c57.idr	Intergenic	Intergenic	51784.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	36.0	51.5	36.0	18.5	38.5	31.0
Merged-chr5-30944845-1	chr5	30944345	30945345	+	742.0	f1_c57bl6.idr	intron (NM_026770, intron 1 of 5)	L3|LINE|CR1	582.0	NM_001160149	68567.0	Mm.45127	NM_026770	ENSMUSG00000029161	Cgref1	1110004G24Rik|AW045201|Cgr11	cell growth regulator with EF hand domain 1	protein-coding	3.5	0.0	1.5	0.0	4.0	0.5
Merged-chr6-70849747-1	chr6	70849247	70850247	+	742.0	f0_balb.idr	intron (NM_001313918, intron 1 of 2)	intron (NM_001313918, intron 1 of 2)	5232.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-22437279-2	chr17	22436779	22437779	+	742.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198003, intron 2 of 6)	L1_Mus2|LINE|L1	13077.0	NM_001331198	74149.0	Mm.30767	NM_198003	ENSMUSG00000071266	Zfp946	1300003B13Rik	zinc finger protein 946	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51481984-2	chr14	51481484	51482484	+	742.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_3-I_MM-int|LTR|ERVK	30022.0	NM_009486	22301.0	Mm.482572	NM_009486	ENSMUSG00000070448	Vmn2r89	V2r10|V2r11	vomeronasal 2, receptor 89	protein-coding	4.5	26.5	15.5	4.5	26.0	16.5
Merged-chr10-59893758-2	chr10	59893258	59894258	+	742.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019965, intron 5 of 8)	B1F2|SINE|Alu	14167.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3792468-2	chr12	3791968	3792968	+	742.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14512.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107545239-2	chr9	107544720	107545720	+	742.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018879, intron 9 of 10)	intron (NM_018879, intron 9 of 10)	-2090.0	NM_053253	114602.0	Mm.28331	NM_053253	ENSMUSG00000010044	Zmynd10	Blu	zinc finger, MYND domain containing 10	protein-coding	5.0	0.0	5.0	4.5	3.5	3.0
Merged-chr8-57479861-1	chr8	57479361	57480361	+	742.0	f0_balb.idr	Intergenic	Intergenic	7999.0	NM_021788	60406.0	Mm.118	NM_021788	ENSMUSG00000031609	Sap30	30kDa	sin3 associated polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-116023545-3	chr5	116023078	116024078	+	742.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031869, intron 1 of 6)	intron (NM_031869, intron 1 of 6)	850.0	NM_031869	19079.0	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	3.5	15.0	2.0	1.0	9.5	2.0
Merged-chr4-53232591-1	chr4	53232091	53233091	+	742.0	f0_balb.idr	Intergenic	Intergenic	-13605.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	1.0	0.0	1.5	7.0	5.5	1.5
Merged-chr10-34234676-2	chr10	34234176	34235176	+	742.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27125.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164832471-2	chr2	164831971	164832971	+	742.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001038492)	promoter-TSS (NM_001038492)	-401.0	NM_001038492	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-18005612-2	chr5	18005112	18006112	+	742.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 5 of 7)	RMER17A2|LTR|ERVK	43042.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-53666407-2	chr9	53665907	53666907	+	742.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161618, intron 1 of 17)	intron (NM_001161618, intron 1 of 17)	1100.0	NM_001161618	75717.0	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92603585-3	chr5	92603099	92604099	+	742.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175096, intron 1 of 1)	intron (NM_175096, intron 1 of 1)	548.0	NM_175096	52331.0	Mm.21965	NM_175096	ENSMUSG00000047963	Stbd1	D530019K15Rik|D5Ertd593e	starch binding domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-111313020-2	chr14	111312520	111313520	+	742.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-362095.0	NM_198865	75409.0	Mm.235097	NM_029273	ENSMUSG00000033214	Slitrk5	2610019D03Rik	SLIT and NTRK-like family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31465959-1	chr15	31465459	31466459	+	742.0	f0_balb.idr	intron (NM_172606, intron 23 of 25)	intron (NM_172606, intron 23 of 25)	-12270.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90495696-1	chr3	90495196	90496196	+	742.0	f1_c57bl6.idr	Intergenic	Intergenic	-4683.0	NM_133854	20615.0	Mm.331182	NM_133854	ENSMUSG00000001018	Snapin	25kDa|AA407989|AV026596|Bloc1s7|Snap25bp|Snapap	SNAP-associated protein	protein-coding	0.5	0.0	0.0	0.5	2.0	0.0
Merged-chr9-40381920-2	chr9	40381420	40382420	+	742.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 2 of 20)	intron (NM_001357617, intron 2 of 20)	-5503.0	NM_001357621	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr9-7845014-2	chr9	7844514	7845514	+	742.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-7957.0	NM_007465	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38482831-2	chr2	38482331	38483331	+	742.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28866.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-102852399-1	chr9	102851899	102852899	+	742.0	f0_balb.idr	intron (NM_001284258, intron 1 of 13)	Lx9|LINE|L1	17479.0	NM_001284258	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	0.0	6.0	7.0	5.0	9.0	22.0
Merged-chr11-20117462-1	chr11	20116962	20117962	+	742.0	f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-4511.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	16.5	25.5	6.5	2.5	19.5	13.5
Merged-chr8-39108270-1	chr8	39107770	39108770	+	742.0	f1_balb.idr	intron (NM_001357306, intron 6 of 10)	intron (NM_001357306, intron 6 of 10)	102425.0	NM_001357306	80286.0	Mm.272722	NM_030254	ENSMUSG00000039530	Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding	14.0	8.0	1.5	23.5	0.0	2.0
Merged-chr8-126857978-2	chr8	126857478	126858478	+	742.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	8958.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152512583-2	chr1	152512083	152513083	+	742.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A2|LTR|ERVK	112634.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36687906-1	chr18	36687406	36688406	+	742.0	f0_balb.idr	intron (NM_172831, intron 9 of 12)	URR1B|DNA|hAT-Charlie	8019.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	3.5	13.0	3.0	3.0	19.0	11.0
Merged-chr1-182381432-2	chr1	182380932	182381932	+	742.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27735.0	NM_173378	209456.0	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-40410635-1	chr8	40410135	40411135	+	742.0	f0_balb.idr	Intergenic	Intergenic	-13180.0	NM_178395	70546.0	Mm.34326	NM_178395	ENSMUSG00000039470	Zdhhc2	5730415P04Rik|6430583A19Rik|DHHC-2	zinc finger, DHHC domain containing 2	protein-coding	0.0	0.5	0.5	1.0	0.5	3.0
Merged-chr2-172397538-6	chr2	172396941	172397941	+	741.972229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080820, intron 1 of 6)	L1_Mus2|LINE|L1	3647.0	NM_001276423	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135150626-4	chr4	135150116	135151116	+	741.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019732, intron 1 of 5)	intron (NM_019732, intron 1 of 5)	29971.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79028739-3	chr8	79028261	79029261	+	741.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 1 of 14)	intron (NM_001294279, intron 1 of 14)	324.0	NM_178267	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-24468601-4	chr1	24468090	24469090	+	741.924988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007733, intron 11 of 50)	intron (NM_007733, intron 11 of 50)	118847.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	1.0	3.0	0.0	0.5	6.0	2.0
Merged-chr15-41751619-4	chr15	41751056	41752056	+	741.924988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 3 of 17)	intron (NR_152565, intron 3 of 17)	-37439.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32170327-3	chr4	32169888	32170888	+	741.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	206281.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	7.0	28.0	10.5	2.0	7.0	12.5
Merged-chr9-116177464-3	chr9	116176967	116177967	+	741.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2104.0	NM_029575	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34254595-4	chr19	34254086	34255086	+	741.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007392, intron 1 of 8)	intron (NM_007392, intron 1 of 8)	787.0	NM_007392	11475.0	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMAalpha|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr6-125039045-2	chr6	125038542	125039542	+	741.849976	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133345)	promoter-TSS (NM_133345)	-806.0	NM_133345	28019.0	Mm.262547	NM_133345	ENSMUSG00000030330	Ing4	D6Wsu147e|D6Xrf92|p29ING4	inhibitor of growth family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-35698668-2	chr15	35698175	35699175	+	741.833374	f0_balb.idr|f1_c57bl6.idr	intron (NM_177151, intron 33 of 61)	intron (NM_177151, intron 33 of 61)	-37628.0	NR_030606	100124469.0		NR_030606	ENSMUSG00000077890	Mir875	Mirn875|mir-875|mmu-mir-875	microRNA 875	ncRNA	5.0	6.5	4.5	7.0	17.5	7.5
Merged-chr11-116691437-2	chr11	116690937	116691937	+	741.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009180, intron 1 of 8)	intron (NM_009180, intron 1 of 8)	3223.0	NM_009180	20446.0	Mm.3947	NM_009180	ENSMUSG00000057286	St6galnac2	II|ST6GalNAc|Siat7|Siat7b	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-38309110-4	chr5	38308617	38309617	+	741.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10392.0	NM_013503	13492.0	Mm.167154	NM_013503	ENSMUSG00000039358	Drd5	D5R|Drd-5|Drd1b|Gpcr1	dopamine receptor D5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119810283-2	chr8	119809783	119810783	+	741.833313	f1_balb.idr|f1_c57bl6.idr	exon (NM_028071, exon 4 of 4)	exon (NM_028071, exon 4 of 4)	30296.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28905729-2	chr17	28905229	28906229	+	741.833313	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045457, exon 2 of 3)	non-coding (NR_045457, exon 2 of 3)	464.0	NR_045457	74179.0	Mm.248931	NR_045457	ENSMUSG00000085333	1700030A11Rik	-	RIKEN cDNA 1700030A11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44094246-4	chr9	44093748	44094748	+	741.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016808, exon 13 of 13)	3' UTR (NM_016808, exon 13 of 13)	-7522.0	NM_001190314	259172.0	Mm.227110	NM_147126	ENSMUSG00000034739	Mfrp	rd6	membrane frizzled-related protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25280296-2	chr7	25279796	25280796	+	741.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302811, intron 2 of 20)	intron (NM_001302811, intron 2 of 20)	-1883.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5263188-2	chr11	5262688	5263688	+	741.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1578.0	NM_032396	84035.0	Mm.209989	NM_032396	ENSMUSG00000020393	Kremen1	AV002070|Kremen|Krm1	kringle containing transmembrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52243813-2	chr3	52243323	52244323	+	741.75	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-24514.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	1.0	2.5	0.0	1.0	0.0	1.0
Merged-chr8-88290559-3	chr8	88290067	88291067	+	741.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037723, intron 1 of 27)	intron (NM_001037723, intron 1 of 27)	1501.0	NM_001037723	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0.0	0.0	0.5	0.5	0.0	0.5
Merged-chr12-91877788-3	chr12	91877276	91878276	+	741.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28619.0	NM_011344	20338.0	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10978569-3	chr16	10978041	10979041	+	741.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	14580.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43787676-3	chr5	43787178	43788178	+	741.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5529.0	NM_178729	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	6.5	0.0	1.0	1.0	9.5	1.5
Merged-chr1-128633871-3	chr1	128633374	128634374	+	741.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41575.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	2.5	22.5	9.5	2.5	16.0	2.0
Merged-chr1-180863839-3	chr1	180863347	180864347	+	741.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145943, intron 6 of 6)	intron (NM_145943, intron 6 of 6)	12696.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117081954-4	chr10	117081420	117082420	+	741.674988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177798, intron 5 of 9)	B1_Mm|SINE|Alu	-18068.0	NM_007636	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127630068-3	chr7	127629552	127630552	+	741.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14780.0	NR_155451	320683.0	Mm.156718	NM_177226	ENSMUSG00000045639	Zfp629	9330199A09Rik|Znf629	zinc finger protein 629	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-37605100-3	chr6	37604612	37605612	+	741.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74939.0	NM_145364	208665.0	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116678308-3	chr11	116677812	116678812	+	741.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009180, intron 8 of 8)	intron (NM_009180, intron 8 of 8)	3715.0	NR_028570	100216538.0		NR_028570	ENSMUSG00000065094	Snord1a	snR38	small nucleolar RNA, C/D box 1A	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136174484-2	chr5	136173984	136174984	+	741.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3828.0	NM_178751	269717.0	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91110576-3	chr6	91110072	91111072	+	741.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018815, intron 1 of 39)	L1MB3|LINE|L1	6254.0	NM_018815	54563.0	Mm.28162	NM_018815	ENSMUSG00000030091	Nup210	9830001L10|AI836801|Pom210|gp190|gp210	nucleoporin 210	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101720802-3	chr4	101720228	101721228	+	741.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146146, intron 1 of 18)	intron (NM_146146, intron 1 of 18)	3321.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	0.0	2.0	3.0	0.0	2.5	2.5
Merged-chr13-21754729-2	chr13	21754229	21755229	+	741.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178183)	promoter-TSS (NM_178183)	606.0	NM_178201	319187.0		NM_178201	ENSMUSG00000095217	Hist1h2bn	-	histone cluster 1, H2bn	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20098103-3	chr13	20097590	20098590	+	741.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	7583.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	1.0	23.5	19.5	16.5	22.0	40.0
Merged-chr9-22531394-3	chr9	22530882	22531882	+	741.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360259, intron 5 of 22)	MTEa|LTR|ERVL-MaLR	55667.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32172942-2	chr12	32172442	32173442	+	741.666687	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001146201)	TTS (NM_001146201)	35396.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	0.0	4.5	1.0	2.0	3.0	2.5
Merged-chr5-88766268-4	chr5	88765776	88766776	+	741.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007832, intron 1 of 6)	intron (NM_007832, intron 1 of 6)	1263.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5536990-4	chr18	5536491	5537491	+	741.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033552, intron 4 of 6)	intron (NR_033552, intron 4 of 6)	-54869.0	NM_011546	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	7.0	0.0	2.5	0.5	4.0	2.0
Merged-chr17-12758949-2	chr17	12758449	12759449	+	741.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010515, intron 1 of 47)	intron (NM_010515, intron 1 of 47)	10757.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11031934-4	chr4	11031450	11032450	+	741.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24331.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91087487-4	chr2	91086962	91087962	+	741.658325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9216.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	54.5	126.0	77.0	71.0	155.5	89.0
Merged-chr12-105026346-4	chr12	105025842	105026842	+	741.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4799.0	NR_037229	100526471.0		NR_037229	ENSMUSG00000106366	Mir3069	mir-3069|mmu-mir-3069	microRNA 3069	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-137397544-3	chr6	137397022	137398022	+	741.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 10 of 26)	intron (NM_011216, intron 10 of 26)	-13199.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142391320-3	chr7	142390867	142391867	+	741.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3497.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	24.0	28.5	33.0	9.5	39.0	26.0
Merged-chr9-44420324-4	chr9	44419822	44420822	+	741.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger5|DNA|TcMar-Tigger	-2253.0	NM_201372	382073.0	Mm.259573	NM_201372	ENSMUSG00000043923	Ccdc84	D630044F24Rik|Gm1114	coiled-coil domain containing 84	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-56036102-4	chr16	56035611	56036611	+	741.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029092, intron 1 of 1)	intron (NM_029092, intron 1 of 1)	1663.0	NM_029092	52575.0	Mm.288742	NM_029092	ENSMUSG00000044763	Trmt10c	1300018J16Rik|D16Ertd454e|Rg9mtd1|Rnmtd1	tRNA methyltransferase 10C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-114498411-3	chr9	114497911	114498911	+	741.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1867.0	NM_009916	12773.0	Mm.1337	NM_009916	ENSMUSG00000047898	Ccr4	C-C CKR-4|CHEMR1|Cmkbr4|LESTR|Sdf1r	chemokine (C-C motif) receptor 4	protein-coding	1.0	0.0	1.5	0.0	4.5	0.0
Merged-chr17-71310102-3	chr17	71309625	71310625	+	741.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	886.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	10.5	15.5	33.0	33.5	57.0	60.5
Merged-chr12-99544486-4	chr12	99543986	99544986	+	741.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19355.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77909639-2	chr10	77909139	77910139	+	741.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_138301, exon 34 of 34)	3' UTR (NM_138301, exon 34 of 34)	-7103.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120834542-3	chr7	120834048	120835048	+	741.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8283.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141669793-2	chr4	141669293	141670293	+	741.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-5678.0	NM_001033150	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	61.0	198.0	137.0	90.5	227.0	225.5
Merged-chr1-136627853-2	chr1	136627353	136628353	+	741.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_177643, exon 2 of 2)	exon (NM_177643, exon 2 of 2)	2952.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-32193805-2	chr14	32193305	32194305	+	741.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016897, intron 3 of 6)	B2_Mm2|SINE|B2	8086.0	NM_016897	53600.0	Mm.303703	NM_016897	ENSMUSG00000013701	Timm23	Tim23	translocase of inner mitochondrial membrane 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120922157-2	chr7	120921657	120922657	+	741.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164096, intron 1 of 19)	intron (NM_001164096, intron 1 of 19)	4413.0	NM_001164096	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-64070940-4	chr14	64070448	64071448	+	741.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14462.0	NM_001081063	71037.0	Mm.19977	NM_001081063	ENSMUSG00000034623	Prss55	4933401F05Rik	protease, serine 55	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33919137-2	chr17	33918637	33919637	+	741.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009318)	promoter-TSS (NM_009318)	-341.0	NM_001025313	21356.0	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	24.5	23.0	23.5	2.5	47.5	34.5
Merged-chr7-45131205-2	chr7	45130705	45131705	+	741.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013520)	TTS (NM_013520)	-2460.0	NM_009438	22121.0	Mm.180458	NM_009438	ENSMUSG00000074129	Rpl13a	1810026N22Rik|Tstap198-7|tum-antigen	ribosomal protein L13A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25317862-2	chr10	25317362	25318362	+	741.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-18699.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0.0	1.0	2.0	3.0	0.0	1.0
Merged-chr13-31807335-2	chr13	31806835	31807835	+	741.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008592, exon 1 of 1)	exon (NM_008592, exon 1 of 1)	689.0	NM_008592	17300.0	Mm.12949	NM_008592	ENSMUSG00000050295	Foxc1	FREAC3|Fkh1|Mf1|Mf4|ch|fkh-1|frkhda	forkhead box C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84443070-1	chr3	84442570	84443570	+	741.5	f0_balb.idr	3' UTR (NM_001205355, exon 12 of 12)	3' UTR (NM_001205355, exon 12 of 12)	36421.0	NM_001205355	229474.0	Mm.331107	NM_001033301	ENSMUSG00000041842	Fhdc1	6330505N24Rik|Gm126	FH2 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135465358-2	chr5	135464858	135465858	+	741.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	-70812.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-69460140-2	chr15	69459640	69460640	+	741.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	189607.0	NR_130983	75076.0		NR_130983	ENSMUSG00000116167	4930504C09Rik	-	RIKEN cDNA 4930504C09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61396822-2	chr9	61396322	61397322	+	741.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083927, intron 6 of 19)	intron (NM_001083927, intron 6 of 19)	24456.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-48901543-2	chr11	48901043	48902043	+	741.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024230, intron 2 of 4)	intron (NM_001024230, intron 2 of 4)	609.0	NM_001024230	432555.0	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83611372-2	chr8	83610872	83611872	+	741.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018808, exon 3 of 3)	3' UTR (NM_018808, exon 3 of 3)	2824.0	NM_001308227	81489.0	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr3-108767054-1	chr3	108766554	108767554	+	741.5	f0_balb.idr	intron (NM_177859, intron 6 of 11)	intron (NM_177859, intron 6 of 11)	27396.0	NM_177859	329738.0	Mm.72322	NM_177859	ENSMUSG00000049565	Aknad1	4921525H12Rik	AKNA domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-29729635-2	chr5	29729113	29730113	+	741.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6285.0	NM_001359198	23950.0	Mm.290110	NM_011847	ENSMUSG00000029131	Dnajb6	HSJ-2|Mrj|mDj4	DnaJ heat shock protein family (Hsp40) member B6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50111202-2	chr6	50110702	50111702	+	741.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361248, intron 1 of 13)	intron (NM_001361248, intron 1 of 13)	342.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	6.5	12.0	21.0	6.5	9.0	21.0
Merged-chr5-88637839-2	chr5	88637339	88638339	+	741.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 12 of 13)	MTD|LTR|ERVL-MaLR	37741.0	NM_001098476	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98919236-2	chr10	98918736	98919736	+	741.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	4084.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121734924-2	chr11	121734424	121735424	+	741.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32497.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-43846384-4	chr10	43845876	43846876	+	741.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20469.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-84831301-2	chr11	84830801	84831801	+	741.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_046281)	TTS (NR_046281)	2123.0	NR_046281	74995.0	Mm.84413	NR_046281	ENSMUSG00000086799	4930502E09Rik	-	RIKEN cDNA 4930502E09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106662082-2	chr11	106661582	106662582	+	741.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 13 of 14)	intron (NM_001305158, intron 13 of 14)	-49152.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4919157-2	chr16	4918657	4919657	+	741.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 8 of 17)	intron (NM_001357062, intron 8 of 17)	-19954.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97189854-2	chr11	97189354	97190354	+	741.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-1962.0	NM_008379	16211.0	Mm.251013	NM_008379	ENSMUSG00000001440	Kpnb1	AA409963|IPOB|Impnb	karyopherin (importin) beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61704677-2	chr9	61704177	61705177	+	741.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	209833.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-117019201-2	chr13	117018701	117019701	+	741.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	Tigger5|DNA|TcMar-Tigger	6315.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	3.0	11.0	6.5	2.5	7.5	3.5
Merged-chr10-20106251-2	chr10	20105746	20106746	+	741.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 18 of 29)	intron (NM_008580, intron 18 of 29)	-42674.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	8.0	28.5	6.5	6.0	14.5	4.5
Merged-chr16-91013639-2	chr16	91013139	91014139	+	741.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026110)	TTS (NM_026110)	-2331.0	NM_001164483	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21270619-2	chr19	21270119	21271119	+	741.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1659.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	8.0	2.5	2.0	12.0	1.0	1.0
Merged-chr4-99483189-2	chr4	99482689	99483689	+	741.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TATATG)n|Simple_repeat|Simple_repeat	-173110.0	NM_010425	15221.0	Mm.4758	NM_010425	ENSMUSG00000067261	Foxd3	CWH3|Genesis|Hfh2	forkhead box D3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26124803-2	chr17	26124303	26125303	+	741.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024227, intron 2 of 4)	intron (NM_024227, intron 2 of 4)	1300.0	NM_024227	68611.0	Mm.273102	NM_024227	ENSMUSG00000024181	Mrpl28	1110015G04Rik|L28mt|MAAT1|MRP-L28|p15	mitochondrial ribosomal protein L28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123558843-2	chr4	123558343	123559343	+	741.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 1 of 92)	B3|SINE|B2	-57577.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5800496-2	chr13	5799996	5800996	+	741.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57596.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-44829577-2	chr2	44829077	44830077	+	741.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172662, intron 2 of 10)	MTEb-int|LTR|ERVL-MaLR	32045.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-94955181-2	chr3	94954721	94955721	+	741.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355705, intron 2 of 9)	intron (NM_001355705, intron 2 of 9)	705.0	NM_001355705	53970.0	Mm.24308	NM_017395	ENSMUSG00000005774	Rfx5	-	regulatory factor X, 5 (influences HLA class II expression)	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr15-76700482-2	chr15	76699982	76700982	+	741.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_182805)	TTS (NM_182805)	-1060.0	NM_027122	69572.0	Mm.34920	NM_027122	ENSMUSG00000019080	Mfsd3	2310010G13Rik	major facilitator superfamily domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-88603902-2	chr18	88603402	88604402	+	741.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	290305.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107645795-4	chr9	107645343	107646343	+	741.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10501.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	4.0	0.0	3.0	12.5	13.5	5.0
Merged-chr4-21879010-3	chr4	21878511	21879511	+	741.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172687)	promoter-TSS (NM_172687)	-635.0	NM_172687	230027.0	Mm.5662	NM_172687	ENSMUSG00000028247	Coq3	4732433J24|C77934	coenzyme Q3 methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97235097-3	chr6	97234586	97235586	+	741.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30|LTR|ERV1	17694.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128820664-3	chr4	128820165	128821165	+	741.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Zaphod3|DNA|hAT-Tip100	-14553.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-117863119-3	chr6	117862619	117863619	+	741.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001360938, exon 2 of 5)	5' UTR (NM_001360938, exon 2 of 5)	238.0	NM_001001792	22685.0	Mm.249661	NM_008616	ENSMUSG00000042097	Zfp239	Mok-2|Mok2|Znf239	zinc finger protein 239	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57238333-3	chr9	57237839	57238839	+	741.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014398, intron 1 of 12)	intron (NM_001014398, intron 1 of 12)	1783.0	NM_001014398	541610.0	Mm.378036	NM_001014398	ENSMUSG00000070298	Trcg1	-	taste receptor cell gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118499466-2	chr2	118498966	118499966	+	741.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19770.0	NM_009273	20813.0	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	5.0	4.0	1.5	3.5	0.0	3.0
Merged-chr11-26165612-2	chr11	26165112	26166112	+	741.416626	f1_balb.idr|f1_c57bl6.idr	intron (NR_027973, intron 1 of 5)	L1_Mus3|LINE|L1	-36628.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22322488-3	chr9	22321983	22322983	+	741.400024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8207.0	NR_033622	625603.0	Mm.37987	NR_033622		Gm6607	EG625603	40S ribosomal protein S20 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47396136-4	chr6	47395630	47396630	+	741.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57602.0	NM_001355551	26965.0	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	Cul-1	cullin 1	protein-coding	0.0	6.5	3.0	3.5	0.5	4.5
Merged-chr19-16874635-3	chr19	16874154	16875154	+	741.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008023)	promoter-TSS (NM_008023)	-824.0	NM_008023	14240.0	Mm.7971	NM_008023	ENSMUSG00000056829	Foxb2	Fkh4	forkhead box B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-5738323-4	chr15	5737827	5738827	+	741.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL1|LINE|L1	242009.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16009852-4	chr19	16009350	16010350	+	741.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045355, intron 2 of 2)	intron (NR_045355, intron 2 of 2)	24775.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	15.5	27.5	43.5	1.5	20.5	16.5
Merged-chr4-63572808-2	chr4	63572308	63573308	+	741.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_144905, intron 6 of 9)	intron (NM_144905, intron 6 of 9)	12581.0	NM_144905	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-146498526-2	chr4	146498026	146499026	+	741.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12BD_Mm|LTR|ERVK	-3474.0	NM_001243138	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91404120-2	chr16	91403620	91404620	+	741.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_010509, exon 9 of 9)	exon (NM_010509, exon 9 of 9)	-2115.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83721277-2	chr8	83720829	83721829	+	741.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_197982, intron 5 of 10)	intron (NM_197982, intron 5 of 10)	2655.0	NR_106188	102465897.0		NR_106188	ENSMUSG00000098465	Mir1668	Gm27590|mmu-mir-1668	microRNA 1668	ncRNA	3.0	2.0	2.0	0.0	4.0	5.0
Merged-chr5-90703063-3	chr5	90702561	90703561	+	741.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56237.0	NM_009141	20311.0	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32585771-2	chr2	32585271	32586271	+	741.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1307.0	NM_001276425	20448.0	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-73223008-3	chr6	73222499	73223499	+	741.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1368.0	NM_001164669	330355.0	Mm.333166	NM_001164669	ENSMUSG00000052861	Dnah6	9830168K20|A730004I20Rik|Dnahc6|mKIAA1697|mdhc6	dynein, axonemal, heavy chain 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157031044-4	chr2	157030547	157031547	+	741.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164663, intron 7 of 14)	intron (NM_001164663, intron 7 of 14)	-23972.0	NM_025853	66934.0	Mm.25410	NM_025853	ENSMUSG00000027635	Dsn1	1700022L09Rik|AW552447	DSN1 homolog, MIS12 kinetochore complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5708236-3	chr2	5707774	5708774	+	741.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	6488.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	12.0	4.5	12.0	6.0	22.5	10.0
Merged-chr7-97251186-2	chr7	97250686	97251686	+	741.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 2 of 9)	B1_Mm|SINE|Alu	74778.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0.0	8.0	7.5	0.5	7.0	7.0
Merged-chr12-105972518-3	chr12	105971992	105972992	+	741.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-37771.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	1.0	3.0	7.5	0.0	0.0	0.0
Merged-chr16-91373590-1	chr16	91373090	91374090	+	741.333313	f0_balb.idr	intron (NM_001347258, intron 1 of 7)	intron (NM_001347258, intron 1 of 7)	807.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122843991-3	chr5	122843491	122844491	+	741.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30B_MM|LTR|ERV1	-6197.0	NM_030564	80751.0	Mm.388529	NM_030564	ENSMUSG00000029474	Rnf34	AW061037|AW536122|BC004042|C88279|RIFF	ring finger protein 34	protein-coding	36.5	30.0	7.5	13.0	25.5	22.5
Merged-chr7-128208350-3	chr7	128207808	128208808	+	741.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1942.0	NM_009943	12862.0	Mm.43824	NM_009943	ENSMUSG00000030785	Cox6a2	CoxVIaH|VIaH	cytochrome c oxidase subunit VIa polypeptide 2	protein-coding	0.0	0.0	1.5	0.0	0.0	1.5
Merged-chr15-58623642-3	chr15	58623131	58624131	+	741.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	199796.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106675386-3	chr8	106674824	106675824	+	741.305542	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7744.0	NM_173037	272538.0	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24111417-5	chr10	24110933	24111933	+	741.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1899.0	NM_001010831	503558.0	Mm.300923	NM_001010831	ENSMUSG00000037424	Taar9	Gm231|taR-9	trace amine-associated receptor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46482344-2	chr19	46481842	46482842	+	741.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 10 of 11)	intron (NM_001025391, intron 10 of 11)	-19306.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181304183-2	chr2	181303683	181304683	+	741.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10317.0	NM_009133	20262.0	Mm.2319	NM_009133	ENSMUSG00000027581	Stmn3	9330161A03Rik|AI604839|R75323|Sclip	stathmin-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-35770852-2	chr11	35770352	35771352	+	741.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_145962, intron 1 of 6)	intron (NM_145962, intron 1 of 6)	1357.0	NM_145962	211347.0	Mm.255044	NM_145962	ENSMUSG00000018846	Pank3	-	pantothenate kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3297932-2	chr19	3297405	3298405	+	741.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	8985.0	NR_105950	102465594.0		NR_105950	ENSMUSG00000099261	Mir6984	Gm27771|mmu-mir-6984	microRNA 6984	ncRNA	0.0	2.5	6.5	0.0	2.5	8.0
Merged-chr2-90739151-2	chr2	90738651	90739651	+	741.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6219.0	NM_018828	55935.0	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130087543-2	chr4	130087039	130088039	+	741.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_028266, intron 55 of 69)	intron (NM_028266, intron 55 of 69)	-20017.0	NM_026441	67898.0	Mm.20818	NM_026441	ENSMUSG00000028779	Pef1	2600002E23Rik|Peflin	penta-EF hand domain containing 1	protein-coding	8.5	0.0	4.0	0.0	12.5	2.5
Merged-chr4-133501575-2	chr4	133501075	133502075	+	741.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3025.0	NM_001081156	69539.0	Mm.151594	NM_001081156	ENSMUSG00000056596	Trnp1	2300002D11Rik|Trnp	TMF1-regulated nuclear protein 1	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr15-67087598-3	chr15	67087080	67088080	+	741.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G3|LTR|ERVL-MaLR	89302.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	7.0	19.0	5.5	5.0	21.0	3.5
Merged-chr11-75584880-3	chr11	75584385	75585385	+	741.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3194.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	0.0	0.0	0.5	3.0	3.5	1.5
Merged-chr15-100226073-3	chr15	100225578	100226578	+	741.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-1781.0	NM_007497	11908.0	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33678975-3	chr17	33678478	33679478	+	741.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109913, intron 1 of 16)	intron (NM_001109913, intron 1 of 16)	6480.0	NM_001109913	76936.0	Mm.311439	NM_029804	ENSMUSG00000059208	Hnrnpm	2610023M21Rik|AA409009|Hnrpm|mKIAA4193	heterogeneous nuclear ribonucleoprotein M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-75005487-2	chr17	75004987	75005987	+	741.166687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019919)	promoter-TSS (NM_019919)	-42.0	NM_019919	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126863880-3	chr8	126863377	126864377	+	741.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	14857.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55395247-2	chr11	55394747	55395747	+	741.166687	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001290817, exon 10 of 10)	3' UTR (NM_001290817, exon 10 of 10)	24833.0	NM_009242	20692.0	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45563832-3	chr7	45563312	45564312	+	741.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025330, intron 6 of 8)	(TG)n|Simple_repeat|Simple_repeat	-6341.0	NM_009737	12036.0	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat(m)|Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120357018-3	chr14	120356495	120357495	+	741.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 2 of 8)	RMER5|LTR|ERV1	50543.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-48639774-2	chr13	48639274	48640274	+	741.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14102.0	NM_001301781	218232.0	Mm.315089	NM_207232	ENSMUSG00000038042	Ptpdc1	AI843923|AW456874|Naa-1|Ptpcd1	protein tyrosine phosphatase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-193699076-2	chr1	193698576	193699576	+	741.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-191546.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38940671-2	chr18	38940171	38941171	+	741.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033789, intron 4 of 4)	intron (NM_001033789, intron 4 of 4)	-21972.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr3-93417967-2	chr3	93417467	93418467	+	741.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3e|LINE|L1	-10524.0	NR_039585	100628630.0		NR_039585	ENSMUSG00000093269	Mir5124a	Mir5124|mmu-mir-5124|mmu-mir-5124a|mu-mir-5124	microRNA 5124a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34984416-2	chr17	34983916	34984916	+	741.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204274, intron 2 of 4)	B3A|SINE|B2	2286.0	NM_030597	27756.0	Mm.165735	NM_030597	ENSMUSG00000007050	Lsm2	D17H6S56E-2|D17H6S56E2|Dmapl|Dmpkap|G7b|Sm-X5|SmX5|snRNP	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-122996336-3	chr4	122995775	122996775	+	741.1190190000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008506, exon 1 of 2)	5' UTR (NM_008506, exon 1 of 2)	344.0	NM_008506	16918.0	Mm.1055	NM_008506	ENSMUSG00000028654	Mycl	AW536278|L-myc|Lmyc-1|Lmyc1|Mycl1|bHLHe38	v-myc avian myelocytomatosis viral oncogene lung carcinoma derived	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30244672-3	chr7	30244177	30245177	+	741.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152437, intron 22 of 32)	intron (NR_152437, intron 22 of 32)	-7912.0	NM_001289817	381867.0	Mm.483986	NM_001289817	ENSMUSG00000100512	Ovol3	Gm1903|movo3	ovo like zinc finger 3	protein-coding	1.0	4.0	5.0	4.0	1.0	2.5
Merged-chr7-45481541-3	chr7	45481039	45482039	+	741.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027903, intron 4 of 6)	intron (NM_027903, intron 4 of 6)	-4723.0	NM_001290996	56734.0	Mm.439742	NM_008807	ENSMUSG00000023467	Tulp2	Pdet	tubby-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79265834-4	chr2	79265347	79266347	+	741.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010576, intron 2 of 27)	intron (NM_010576, intron 2 of 27)	10421.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122378688-2	chr2	122378188	122379188	+	741.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9770.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	6.5	20.0	29.5	8.0	29.0	19.0
Merged-chr19-53039247-2	chr19	53038747	53039747	+	741.099976	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133216)	promoter-TSS (NM_133216)	-593.0	NM_133216	170750.0	Mm.99776	NM_133216	ENSMUSG00000025027	Xpnpep1	D230045I08Rik|sAMP	X-prolyl aminopeptidase (aminopeptidase P) 1, soluble	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31665047-3	chr14	31664552	31665552	+	741.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025295, intron 2 of 3)	intron (NM_025295, intron 2 of 3)	23995.0	NM_025295	26363.0	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88260488-3	chr7	88259986	88260986	+	741.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17599.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45244961-4	chr2	45244542	45245542	+	741.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127600.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-16004517-3	chr3	16004014	16005014	+	741.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081687, intron 1 of 3)	RLTR23|LTR|ERV1	1818.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	9.5	19.5	11.0	3.5	9.5	19.0
Merged-chr14-52196835-2	chr14	52196336	52197336	+	741.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_033618, intron 1 of 25)	CpG	403.0	NM_033618	114741.0	Mm.21662	NM_033618	ENSMUSG00000035726	Supt16	Cdc68|Fact140|Spt16|Supt16h	suppressor of Ty 16	protein-coding	21.0	54.0	44.0	33.5	64.0	49.0
Merged-chr5-103425879-2	chr5	103425379	103426379	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011204, intron 1 of 47)	intron (NM_011204, intron 1 of 47)	687.0	NM_011204	19249.0	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64281749-2	chr5	64281249	64282249	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 9 of 18)	intron (NM_001289514, intron 9 of 18)	51392.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90476183-2	chr2	90475683	90476683	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	2991.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	14.5	16.0	8.5	2.5	6.5	7.0
Merged-chr15-27582451-2	chr15	27581951	27582951	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020332, intron 8 of 11)	intron (NM_020332, intron 8 of 11)	10957.0	NR_106065	102466808.0		NR_106065	ENSMUSG00000098416	Mir7117	Gm27729|mmu-mir-7117	microRNA 7117	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126929243-2	chr8	126928743	126929743	+	741.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16678.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88317330-1	chr8	88316830	88317830	+	741.0	f1_balb.idr	intron (NM_001037724, intron 12 of 27)	intron (NM_001037724, intron 12 of 27)	23126.0	NM_001037724	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0.0	2.0	2.0	0.0	1.5	3.5
Merged-chr1-72140786-2	chr1	72140286	72141286	+	741.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	71521.0	NM_001005423	381269.0	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-38735708-3	chr12	38735193	38736193	+	741.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-44389.0	NM_001347379	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	2.5	0.0	3.5	2.0	0.0	2.5
Merged-chr14-48131452-2	chr14	48130937	48131937	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033602, intron 1 of 5)	intron (NM_033602, intron 1 of 5)	10568.0	NM_033602	93834.0	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	2.5	5.5	1.5	6.5	30.5	28.5
Merged-chr1-59907942-3	chr1	59907448	59908448	+	741.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5058.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	4.0	7.5	12.5	0.0	6.0	6.0
Merged-chr4-55348775-2	chr4	55348275	55349275	+	741.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1267.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	21.5	12.0	19.0	17.0	14.5	25.0
Merged-chr16-94637412-2	chr16	94636912	94637912	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	intron (NM_001113389, intron 2 of 11)	25993.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67458879-2	chr7	67458379	67459379	+	741.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86021.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	20.5	25.0	17.0	3.0	20.0	19.5
Merged-chr4-133064071-1	chr4	133063571	133064571	+	741.0	f1_balb.idr	exon (NM_146155, exon 6 of 7)	exon (NM_146155, exon 6 of 7)	52565.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	0.0	8.0	0.0	5.0	0.0	0.5
Merged-chr8-80483433-1	chr8	80482933	80483933	+	741.0	f0_balb.idr	Intergenic	Intergenic	-10612.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71725709-3	chr8	71725177	71726177	+	741.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028715)	promoter-TSS (NM_028715)	4.0	NR_131256	74015.0	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	0.0	0.5	2.0	5.5	0.0	1.0
Merged-chr10-124784802-2	chr10	124784302	124785302	+	741.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	315728.0	NR_028310	75030.0	Mm.159403	NR_028310	ENSMUSG00000112364	4930503E24Rik	-	eukaryotic translation initiation factor 3, subunit I pseudogene	pseudo	4.5	0.5	4.0	0.0	0.5	3.5
Merged-chr17-87105685-2	chr17	87105185	87106185	+	741.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1994.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	8.0	18.0	7.0	4.0	28.0	20.5
Merged-chr2-29194142-2	chr2	29193642	29194642	+	741.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001305805)	TTS (NM_001305805)	53957.0	NM_001305805	171171.0	Mm.442448	NM_133500	ENSMUSG00000035513	Ntng2	2610016D08Rik|Lmnt2	netrin G2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-44261959-1	chr17	44261459	44262459	+	741.0	f0_balb.idr	intron (NM_172621, intron 4 of 5)	intron (NM_172621, intron 4 of 5)	73387.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120548838-1	chr8	120548338	120549338	+	741.0	f1_balb.idr	intron (NM_001145896, intron 1 of 15)	intron (NM_001145896, intron 1 of 15)	10142.0	NR_106159	102466849.0		NR_106159	ENSMUSG00000098280	Mir7687	Gm27573|mmu-mir-7687	microRNA 7687	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39959281-2	chr10	39958781	39959781	+	741.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001113388, exon 4 of 4)	3' UTR (NM_001113388, exon 4 of 4)	872.0	NM_001173500	100041085.0	Mm.332530	NM_001173500	ENSMUSG00000071335	Mfsd4b3	G630090E17Rik|Naglt1c	major facilitator superfamily domain containing 4B3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23562033-2	chr13	23561533	23562533	+	741.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178205, exon 1 of 1)	exon (NM_178205, exon 1 of 1)	332.0	NM_178205	319151.0	Mm.261658	NM_178205	ENSMUSG00000069273	Hist1h3e	H3-f|H3.1	histone cluster 1, H3e	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-99660028-2	chr2	99659528	99660528	+	741.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-1964720.0	NM_009020	19374.0	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4867494-1	chr11	4866994	4867994	+	741.0	f1_balb.idr	Intergenic	LTRIS_Mus|LTR|ERV1	-6457.0	NM_008698	18082.0	Mm.293716	NM_008698	ENSMUSG00000034285	Nipsnap1	-	nipsnap homolog 1	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr19-37608647-1	chr19	37608147	37609147	+	741.0	f0_balb.idr	intron (NM_175353, intron 17 of 21)	MTE2b|LTR|ERVL-MaLR	58229.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	5.0	3.5	0.0	6.0	0.0	1.0
Merged-chr3-95143789-1	chr3	95143289	95144289	+	741.0	f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1429.0	NM_027206	69769.0	Mm.34368	NM_027206	ENSMUSG00000013707	Tnfaip8l2	1810019A08Rik|AW610835|TIPE2	tumor necrosis factor, alpha-induced protein 8-like 2	protein-coding	1.0	0.5	11.5	0.0	7.5	8.0
Merged-chr3-138537551-2	chr3	138537051	138538051	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313980, intron 2 of 7)	intron (NM_001313980, intron 2 of 7)	10283.0	NM_001313980	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-38042707-2	chr3	38042207	38043207	+	741.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143894.0	NR_040559	626410.0	Mm.389417	NR_040559	ENSMUSG00000106461	Gm20755	-	predicted gene, 20755	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43872457-1	chr5	43871957	43872957	+	741.0	f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	3648.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	53.0	125.5	134.0	56.0	159.0	115.0
Merged-chr8-25076299-2	chr8	25075799	25076799	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 2 of 11)	ORR1B1|LTR|ERVL-MaLR	25512.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122053657-2	chr5	122053157	122054157	+	741.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3806.0	NM_001312908	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	3.5
Merged-chr4-43402328-1	chr4	43401828	43402828	+	741.0	f1_balb.idr	intron (NM_001037709, intron 1 of 11)	intron (NM_001037709, intron 1 of 11)	-4174.0	NM_199057	100213.0	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	18.5	35.0	26.5	4.0	18.5	13.0
Merged-chr16-76283897-1	chr16	76283397	76284397	+	741.0	f0_c57.idr	Intergenic	Intergenic	89152.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113623593-2	chr5	113623093	113624093	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	20010.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173424635-1	chr1	173424135	173425135	+	741.0	f1_balb.idr	intron (NM_001013779, intron 1 of 8)	B4A|SINE|B4	4031.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	0.5	0.0	6.5	6.5	14.0	7.0
Merged-chr3-94616917-2	chr3	94616417	94617417	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293728, intron 8 of 11)	intron (NM_001293728, intron 8 of 11)	-34201.0	NM_029721	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	0.0	0.0	0.0	6.0	0.0	2.0
Merged-chr7-99148596-2	chr7	99148096	99149096	+	741.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7452.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	8.5	0.0	1.5	7.5	0.0	0.0
Merged-chr1-106404131-2	chr1	106403634	106404634	+	741.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	142497.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	6.5	0.5	1.0	4.0	0.5	1.0
Merged-chr13-35949039-1	chr13	35948539	35949539	+	741.0	f1_c57bl6.idr	Intergenic	Intergenic	-18867.0	NM_029628	76487.0	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	1.0	5.0	1.5	3.5	12.0	6.0
Merged-chr9-54514066-2	chr9	54513566	54514566	+	741.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12440.0	NM_172771	235380.0	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88316898-2	chr4	88316398	88317398	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081184, intron 21 of 43)	L1MCa|LINE|L1	122028.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr6-90604161-2	chr6	90603661	90604661	+	741.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027868)	promoter-TSS (NM_027868)	-719.0	NM_027868	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31077976-1	chr6	31077476	31078476	+	741.0	f0_balb.idr	Intergenic	Intergenic	-14883.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83160438-1	chr6	83159938	83160938	+	741.0	f1_balb.idr	intron (NM_027948, intron 1 of 3)	B1F2|SINE|Alu	4034.0	NM_027948	71837.0	Mm.17621	NM_027948	ENSMUSG00000030030	1700003E16Rik	AU041756	RIKEN cDNA 1700003E16 gene	protein-coding	0.0	0.5	0.0	4.0	2.0	0.0
Merged-chr10-81180326-2	chr10	81179826	81180826	+	741.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007907, exon 9 of 14)	exon (NM_007907, exon 9 of 14)	1365.0	NR_028549	100217454.0		NR_028549	ENSMUSG00000064441	Snord37	MBII-376	small nucleolar RNA, C/D box 37	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88415207-2	chr3	88414707	88415707	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145877, intron 2 of 2)	ID_B1|SINE|B4	-4810.0	NM_025928	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43962411-2	chr13	43961911	43962911	+	741.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-158756.0	NR_045285	328235.0	Mm.188356	NR_045285	ENSMUSG00000089815	Gm5083	A730030A06	predicted gene 5083	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93818835-2	chr10	93818335	93819335	+	741.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12720.0	NM_001206851	327799.0	Mm.491598	NM_183199	ENSMUSG00000020020	Usp44	E430004F17Rik	ubiquitin specific peptidase 44	protein-coding	6.0	4.5	0.5	3.0	13.5	1.0
Merged-chr1-43543945-2	chr1	43543445	43544445	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 3 of 4)	MER2|DNA|TcMar-Tigger	98194.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-142538735-3	chr6	142538243	142539243	+	741.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30786.0	NM_001316322	16832.0	Mm.9745	NM_008492	ENSMUSG00000030246	Ldhb	AI790582|H-Ldh|LDH-B|LDH-H|Ldh-2|Ldh2	lactate dehydrogenase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134185200-2	chr5	134184700	134185700	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359852, intron 1 of 14)	B1_Mur1|SINE|Alu	1162.0	NM_053266	114674.0	Mm.218744	NM_053266	ENSMUSG00000015942	Gtf2ird2	1700012P16Rik	GTF2I repeat domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-34218496-2	chr4	34217996	34218996	+	741.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-168429.0	NM_026293	67652.0	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-63850604-2	chr13	63850137	63851137	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361124, intron 8 of 9)	L1MC2|LINE|L1	35397.0	NM_023507	76251.0	Mm.186610	NM_023507	ENSMUSG00000021470	Ercc6l2	0610007P08Rik|1700019D06Rik|9330134C04Rik|Rad26l|Sr278	excision repair cross-complementing rodent repair deficiency, complementation group 6 like 2	protein-coding	10.5	25.0	12.0	4.0	23.5	26.0
Merged-chr15-95977531-2	chr15	95977031	95978031	+	741.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102022.0	NR_126493	402773.0	Mm.210567	NM_001033483	ENSMUSG00000078925	D030018L15Rik	-	nuclear receptor coactivator 2 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3328367-2	chr2	3327867	3328867	+	741.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001013376)	TTS (NM_001013376)	4261.0	NM_001013376	227522.0	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68589640-2	chr11	68589140	68590140	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177779, intron 3 of 6)	intron (NM_177779, intron 3 of 6)	2603.0	NM_177779	276920.0	Mm.123046	NM_177779	ENSMUSG00000045915	Ccdc42	A530001H01Rik	coiled-coil domain containing 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-87470924-1	chr14	87470424	87471424	+	741.0	f1_c57bl6.idr	intron (NM_001253755, intron 3 of 11)	intron (NM_001253755, intron 3 of 11)	54341.0	NM_001253755	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	0.0	8.5	2.5	0.0	0.0	0.0
Merged-chr1-191841056-2	chr1	191840556	191841556	+	741.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19583.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	0.0	2.5	0.5	4.0	0.0	1.5
Merged-chr7-81008510-2	chr7	81008010	81009010	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178707, intron 1 of 9)	BGLII_B|LTR|ERVK	14826.0	NM_178707	233410.0	Mm.29525	NM_178707	ENSMUSG00000005621	Zfp592	A730014M16Rik|Znf592	zinc finger protein 592	protein-coding	0.0	0.0	5.5	0.0	0.0	5.5
Merged-chr1-45904573-2	chr1	45904073	45905073	+	741.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21021.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-48839090-2	chr6	48838590	48839590	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164208, intron 1 of 6)	L1ME4b|LINE|L1	1898.0	NM_023056	65963.0	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19085032-2	chr3	19084532	19085532	+	741.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	78063.0	NM_028840	74252.0	Mm.200383	NM_028840	ENSMUSG00000027599	Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108998107-2	chr9	108997607	108998607	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 1 of 13)	intron (NR_153430, intron 1 of 13)	6205.0	NR_153430	270198.0	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93969487-2	chr10	93968987	93969987	+	741.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001304572, exon 12 of 12)	3' UTR (NM_001304572, exon 12 of 12)	-5624.0	NR_029764	723908.0		NR_029764	ENSMUSG00000065607	Mir331	Mirn331|mmu-mir-331	microRNA 331	ncRNA	13.0	39.0	25.0	7.5	9.0	2.0
Merged-chr10-19491982-3	chr10	19491474	19492474	+	740.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152784, intron 2 of 3)	intron (NR_152784, intron 2 of 3)	-2669.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	0.0	0.5	5.0	5.5	12.0	0.5
Merged-chr4-32366356-3	chr4	32365849	32366849	+	740.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-51086.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130915574-4	chr4	130915081	130916081	+	740.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	2247.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-77831981-3	chr1	77831471	77832471	+	740.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-316883.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-93497103-3	chr13	93496597	93497597	+	740.866699	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021310, intron 1 of 10)	intron (NM_021310, intron 1 of 10)	2711.0	NM_021310	57748.0	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52892201-2	chr13	52891701	52892701	+	740.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_016709, intron 4 of 9)	intron (NM_016709, intron 4 of 9)	37476.0	NM_016709	11992.0	Mm.252034	NM_016709	ENSMUSG00000021460	Auh	C77140|W91705	AU RNA binding protein/enoyl-coenzyme A hydratase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4866039-2	chr11	4865538	4866538	+	740.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7913.0	NM_008698	18082.0	Mm.293716	NM_008698	ENSMUSG00000034285	Nipsnap1	-	nipsnap homolog 1	protein-coding	0.0	2.5	0.0	1.0	0.0	1.5
Merged-chr6-47013721-2	chr6	47013221	47014221	+	740.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004357, intron 16 of 23)	intron (NM_001004357, intron 16 of 23)	-230675.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61750249-2	chr11	61749749	61750749	+	740.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_144806, intron 5 of 11)	intron (NM_144806, intron 5 of 11)	11839.0	NM_144806	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80363171-2	chr18	80362671	80363671	+	740.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190373, intron 1 of 3)	CpG	1083.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130422843-2	chr2	130422343	130423343	+	740.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001114541, exon 3 of 8)	exon (NM_001114541, exon 3 of 8)	1445.0	NM_178762	319513.0	Mm.482539	NM_178762	ENSMUSG00000037773	Pced1a	A930025D01Rik|AI480484|Fam113a	PC-esterase domain containing 1A	protein-coding	0.0	10.0	0.0	0.0	0.5	1.0
Merged-chr15-99113813-3	chr15	99113287	99114287	+	740.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13058.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140390006-2	chr5	140389506	140390506	+	740.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172277)	promoter-TSS (NM_172277)	-698.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43531033-3	chr7	43530526	43531526	+	740.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111058, intron 3 of 6)	L1MB7|LINE|L1	2145.0	NM_001111058	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73560881-2	chr7	73560381	73561381	+	740.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2486.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-4686254-3	chr6	4685783	4686783	+	740.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130188, intron 10 of 11)	intron (NM_001130188, intron 10 of 11)	60921.0	NM_001130188	20392.0	Mm.8739	NM_011360	ENSMUSG00000004631	Sgce	e-SG	sarcoglycan, epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-154823300-3	chr1	154822796	154823796	+	740.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97376.0	NM_009782	12290.0	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50463127-2	chr9	50462627	50463627	+	740.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31398.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38946590-4	chr18	38946087	38947087	+	740.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033789, intron 4 of 4)	L1M4|LINE|L1	-27888.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	0.0	17.5	10.5	1.5	8.0	11.0
Merged-chr9-107584400-2	chr9	107583954	107584954	+	740.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019750)	TTS (NM_019750)	3158.0	NM_178020	109685.0	Mm.447916	NM_178020	ENSMUSG00000036091	Hyal3	Hyl3	hyaluronoglucosaminidase 3	protein-coding	0.0	1.5	0.0	2.5	1.5	2.5
Merged-chr5-147554514-2	chr5	147554014	147555014	+	740.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	124358.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-89882485-2	chr5	89881896	89882896	+	740.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081401, intron 1 of 21)	intron (NM_001081401, intron 1 of 21)	938.0	NM_177872	330119.0	Mm.133062	NM_177872	ENSMUSG00000043635	Adamts3	1100001H14Rik|6330442E02Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	protein-coding	0.0	1.5	0.0	0.0	2.5	1.0
Merged-chr1-185364192-1	chr1	185363692	185364692	+	740.75	f0_balb.idr	intron (NM_001357474, intron 1 of 32)	intron (NM_001357474, intron 1 of 32)	1148.0	NM_001357474	107508.0	Mm.154511	NM_029735	ENSMUSG00000026615	Eprs	2410081F06Rik|3010002K18Rik|C79379|Qprs	glutamyl-prolyl-tRNA synthetase	protein-coding	0.0	9.0	15.5	1.5	10.0	6.0
Merged-chr4-147425623-2	chr4	147425123	147426123	+	740.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	L2|LINE|L2	-127654.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29993551-2	chr7	29993074	29994074	+	740.75	f0_balb.idr|f1_balb.idr	intron (NM_001033355, intron 4 of 9)	intron (NM_001033355, intron 4 of 9)	9619.0	NM_001167872	243905.0	Mm.322432	NM_001033355	ENSMUSG00000074221	Zfp568	C80731|Gm1691|Znf568|chato	zinc finger protein 568	protein-coding	14.0	7.0	10.5	11.5	58.5	48.0
Merged-chr14-52124122-4	chr14	52123615	52124615	+	740.733337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168515, intron 6 of 24)	B3|SINE|B2	13212.0	NM_023879	77945.0	Mm.21662	NM_023879	ENSMUSG00000057132	Rpgrip1	0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding	2.5	0.0	0.0	0.0	0.0	1.0
Merged-chr2-165900265-3	chr2	165899739	165900739	+	740.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-15401.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	7.5	10.5	11.5	1.0	6.0	14.0
Merged-chr2-90517307-3	chr2	90516809	90517809	+	740.688904	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-38135.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	27.0	57.0	27.5	33.5	80.0	60.5
Merged-chr6-124703062-4	chr6	124702700	124703700	+	740.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149320, intron 9 of 11)	intron (NR_149320, intron 9 of 11)	8978.0	NM_013536	14791.0	Mm.6390	NM_013536	ENSMUSG00000004268	Emg1	C2f|Grcc2f	EMG1 N1-specific pseudouridine methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-98958003-4	chr9	98957504	98958504	+	740.670837	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_012020, exon 1 of 1)	3' UTR (NM_012020, exon 1 of 1)	2397.0	NM_012020	26927.0	Mm.151239	NM_012020	ENSMUSG00000050397	Foxl2	AU045128|BPES|PINTO|Pfrk	forkhead box L2	protein-coding	0.0	2.0	0.0	0.0	0.0	0.0
Merged-chr4-103358426-3	chr4	103357917	103358917	+	740.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025909, intron 8 of 8)	intron (NM_025909, intron 8 of 8)	-24083.0	NR_040673	622167.0	Mm.244115	NR_040673	ENSMUSG00000086136	Gm12718	-	predicted gene 12718	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-16565931-3	chr16	16565428	16566428	+	740.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	MTD|LTR|ERVL-MaLR	-5709.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91314335-3	chr16	91313842	91314842	+	740.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44573.0	NM_016968	50914.0	Mm.39300	NM_016968	ENSMUSG00000046160	Olig1	AI836478|AW494459|Bhlhb6|Olg-1|Oligo1|bHLHe21	oligodendrocyte transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-97062140-3	chr16	97061710	97062710	+	740.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031174, intron 1 of 32)	MTD|LTR|ERVL-MaLR	108525.0	NM_031174	13508.0	Mm.102437	NM_031174	ENSMUSG00000050272	Dscam	4932410A21Rik	DS cell adhesion molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121820772-3	chr5	121820268	121821268	+	740.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001306126, intron 3 of 8)	intron (NM_001306126, intron 3 of 8)	-1495.0	NR_105998	102465624.0		NR_105998	ENSMUSG00000099063	Mir7031	Gm27859|mmu-mir-7031	microRNA 7031	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45668670-2	chr14	45668170	45669170	+	740.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10527.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	12.0	36.0	28.5	16.5	24.0	28.0
Merged-chr2-70767055-2	chr2	70766555	70767555	+	740.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172664, intron 3 of 19)	B4A|SINE|B4	58425.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-49258024-2	chr6	49257529	49258529	+	740.666626	f0_c57.idr|f1_c57bl6.idr	intron (NM_001362188, intron 1 of 8)	intron (NM_001362188, intron 1 of 8)	6023.0	NM_001347209	101214.0	Mm.196598	NM_198102	ENSMUSG00000029817	Tra2a	1500010G04Rik|AL022798|G430041M01Rik|mAWMS1	transformer 2 alpha	protein-coding	8.0	7.0	8.0	3.0	7.0	0.0
Merged-chr12-113153388-3	chr12	113152925	113153925	+	740.644409	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007763, intron 2 of 4)	intron (NM_007763, intron 2 of 4)	1413.0	NM_007763	12925.0	Mm.272368	NM_007763	ENSMUSG00000006360	Crip1	CRHP|CRP1|Crip	cysteine-rich protein 1 (intestinal)	protein-coding	18.5	53.5	61.0	28.0	43.5	36.0
Merged-chr2-13237792-3	chr2	13237305	13238305	+	740.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009105, intron 3 of 8)	intron (NM_009105, intron 3 of 8)	33610.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119959581-4	chr4	119959097	119960097	+	740.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	144919.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	8.0	5.0	2.5	5.5	2.5	8.0
Merged-chr6-29767160-2	chr6	29766660	29767660	+	740.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1283.0	NM_021414	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	20.0	26.0	9.5	15.0	26.0	9.5
Merged-chr7-80025924-3	chr7	80025438	80026438	+	740.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175433)	promoter-TSS (NM_175433)	-290.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-126673257-3	chr3	126672759	126673759	+	740.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	MTA_Mm|LTR|ERVL-MaLR	76308.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	19.0	26.0	22.0	9.0	1.5	1.0
Merged-chr1-52858393-3	chr1	52857894	52858894	+	740.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146108, intron 2 of 13)	RLTR13C2|LTR|ERVK	13356.0	NM_146108	227095.0	Mm.222063	NM_146108	ENSMUSG00000041426	Hibch	2610509I15Rik|HIBYL-COA-H	3-hydroxyisobutyryl-Coenzyme A hydrolase	protein-coding	1.5	7.5	1.5	0.0	5.5	2.5
Merged-chr3-121847287-10	chr3	121846777	121847777	+	740.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	-31975.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32589970-2	chr11	32589470	32590470	+	740.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 7 of 18)	intron (NM_009288, intron 7 of 18)	-52585.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr18-39804498-2	chr18	39803998	39804998	+	740.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	31001.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-64636641-2	chr14	64636141	64637141	+	740.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-15890.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-46670294-3	chr13	46669814	46670814	+	740.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033192, intron 1 of 4)	intron (NM_001033192, intron 1 of 4)	792.0	NM_001033192	97863.0	Mm.275934	NM_001033192	ENSMUSG00000069237	Fam8a1	C78339	family with sequence similarity 8, member A1	protein-coding	3.0	5.0	4.5	0.0	0.0	0.0
Merged-chr14-52022414-2	chr14	52021914	52022914	+	740.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1681.0	NM_027248	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	20.0	62.5	41.5	28.0	43.5	21.5
Merged-chr5-30918877-2	chr5	30918377	30919377	+	740.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133918, intron 4 of 7)	intron (NM_133918, intron 4 of 7)	-2682.0	NM_001310525	16548.0	Mm.22451	NM_008439	ENSMUSG00000029162	Khk	-	ketohexokinase	protein-coding	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34254254-2	chr13	34253754	34254754	+	740.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	90928.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73329585-2	chr13	73329085	73330085	+	740.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1103.0	NM_010888	407785.0	Mm.29897	NM_010888	ENSMUSG00000021606	Ndufs6	BC059730|IP13	NADH dehydrogenase (ubiquinone) Fe-S protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-16494970-2	chr11	16494470	16495470	+	740.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13514.0	NM_011343	20335.0	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	4.5	1.5	0.0	7.0	2.0	1.5
Merged-chr3-95225639-2	chr3	95225139	95226139	+	740.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_108026, intron 3 of 3)	intron (NR_108026, intron 3 of 3)	-2785.0	NM_172395	57912.0	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-127042899-2	chr4	127042399	127043399	+	740.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18255.0	NM_026670	68310.0	Mm.273806	NM_026670	ENSMUSG00000043872	Zmym1	5830412B09Rik|AW209050	zinc finger, MYM domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24504552-2	chr7	24504052	24505052	+	740.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153112)	TTS (NM_153112)	-2535.0	NM_001290461	232969.0	Mm.181332	NM_146183	ENSMUSG00000064264	Zfp428	2410005H09Rik|AV271806|AW047854|Znf428	zinc finger protein 428	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-28251876-2	chr19	28251376	28252376	+	740.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-240710.0	NM_001166414	19726.0	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52249918-2	chr13	52249418	52250418	+	740.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	153177.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36074528-2	chr1	36074028	36075028	+	740.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	6128.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75870834-2	chr14	75870334	75871334	+	740.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22911.0	NR_028481	100303751.0	Mm.484707	NR_028481	ENSMUSG00000065147	Snora31	MBI-161	small nucleolar RNA, H/ACA box 31	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-106785938-2	chr3	106785438	106786438	+	740.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007651, intron 1 of 7)	Lx9|LINE|L1	4211.0	NM_007651	12508.0	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-12992443-2	chr7	12991943	12992943	+	740.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009512, intron 4 of 9)	MIR|SINE|MIR	5749.0	NM_009512	26459.0	Mm.10984	NM_009512	ENSMUSG00000030382	Slc27a5	FACVL3|FATP5|VLCS-H2|VLCSH2|Vlacsr	solute carrier family 27 (fatty acid transporter), member 5	protein-coding	1.0	4.5	0.0	0.5	3.0	0.0
Merged-chr2-26661540-2	chr2	26661040	26662040	+	740.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	9742.0	NM_010695	16821.0	Mm.123925	NM_010695	ENSMUSG00000026919	Lcn4	A630045M08Rik|Vnsp2	lipocalin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31069394-2	chr17	31068893	31069893	+	740.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	11699.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	4.5	12.0	18.0	5.0	26.0	22.5
Merged-chr3-88646647-2	chr3	88646147	88647147	+	740.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 21 of 21)	intron (NM_001198913, intron 21 of 21)	6495.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	0.0	1.5	4.0	0.0	2.0	9.0
Merged-chr2-181658389-2	chr2	181657889	181658889	+	740.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13251.0	NM_009236	20672.0	Mm.264904	NM_009236	ENSMUSG00000046470	Sox18	AI385749|Ra|Ragl	SRY (sex determining region Y)-box 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152940034-2	chr2	152939534	152940534	+	740.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001159376)	TTS (NM_001159376)	-6826.0	NM_010226	14239.0	Mm.205798	NM_010226	ENSMUSG00000074676	Foxs1	FREAC10|Fkh3|Fkhl18	forkhead box S1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120947325-3	chr7	120946849	120947849	+	740.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025298)	TTS (NM_025298)	29605.0	NM_001164096	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-41835497-2	chr17	41834997	41835997	+	740.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-480450.0	NM_028474	627626.0	Mm.390999	NM_028474	ENSMUSG00000042256	Ptchd4	3110082D06Rik|Gm321	patched domain containing 4	protein-coding	1.0	3.5	1.0	1.5	0.5	0.0
Merged-chr4-43497537-2	chr4	43497037	43498037	+	740.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013377, intron 9 of 11)	intron (NM_001013377, intron 9 of 11)	4172.0	NM_001037913	622404.0	Mm.289109	NM_001037913	ENSMUSG00000028461	Ccdc107	-	coiled-coil domain containing 107	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64079999-2	chr9	64079499	64080499	+	740.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040743)	promoter-TSS (NR_040743)	-762.0	NR_040743	76814.0	Mm.243771	NR_040743		Scarletltr	2600006L11Rik	Scarletltr, erythroid developmental long intergenic non-protein coding transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19932115-2	chr7	19931615	19932615	+	740.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10972.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-59260334-2	chr3	59259835	59260835	+	740.5	f0_balb.idr|f0_c57.idr	intron (NM_177855, intron 31 of 43)	intron (NM_177855, intron 31 of 43)	2650.0	NM_027571	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	43.0	60.0	60.0	12.5	26.5	19.5
Merged-chr11-8604437-2	chr11	8603937	8604937	+	740.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	60098.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	6.0	1.0	1.5	0.0	1.0
Merged-chr6-73247010-2	chr6	73246510	73247510	+	740.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-1495.0	NM_019879	56451.0	Mm.29845	NM_019879	ENSMUSG00000052738	Suclg1	1500000I01Rik|Sucla1	succinate-CoA ligase, GDP-forming, alpha subunit	protein-coding	9.0	3.5	0.0	0.0	1.5	1.5
Merged-chr8-77437165-2	chr8	77436665	77437665	+	740.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 3 of 22)	RSINE1|SINE|B4	-79891.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30669446-4	chr7	30668938	30669938	+	740.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2167.0	NR_027849	74927.0	Mm.87326	NM_183108	ENSMUSG00000049761	Pmis2	1700071L20Rik|4930479M11Rik	Pmis2, sperm specific protein	ncRNA	0.0	3.0	0.0	0.0	5.5	0.0
Merged-chr3-95883219-4	chr3	95882708	95883708	+	740.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033302)	promoter-TSS (NM_001033302)	-980.0	NM_001033302	229599.0	Mm.331218	NM_001033302	ENSMUSG00000038550	Ciart	Chrono|Gm129	circadian associated repressor of transcription	protein-coding	0.0	3.0	7.5	0.0	0.0	3.0
Merged-chr17-84157005-3	chr17	84156540	84157540	+	740.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30907.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-57108523-3	chr2	57108020	57109020	+	740.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139509, intron 7 of 7)	intron (NM_001139509, intron 7 of 7)	6518.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-143389368-4	chr4	143388819	143389819	+	740.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5122.0	NM_031377	83491.0	Mm.190607	NM_031377	ENSMUSG00000041805	Pramel1	-	preferentially expressed antigen in melanoma-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114297824-4	chr6	114297308	114298308	+	740.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178703, intron 1 of 15)	intron (NM_178703, intron 1 of 15)	15173.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55804136-4	chr1	55803616	55804616	+	740.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127125.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	0.0	9.5	12.5	0.5	9.0	1.5
Merged-chr7-80790959-2	chr7	80790448	80791448	+	740.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	B4|SINE|B4	12383.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	2.0	10.0	5.5	3.5	10.5	6.5
Merged-chr10-81175666-2	chr10	81175166	81176166	+	740.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007907)	promoter-TSS (NM_007907)	-965.0	NM_007907	13629.0	Mm.2903	NM_007907	ENSMUSG00000034994	Eef2	Ef-2	eukaryotic translation elongation factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34867872-2	chr18	34867406	34868406	+	740.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6699.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.0	0.0	0.0	3.5	0.0	0.0
Merged-chr1-60904721-2	chr1	60904221	60905221	+	740.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4304.0	NM_009843	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	3.0	1.0	0.5	0.0	4.5	0.5
Merged-chr2-49743254-2	chr2	49742754	49743754	+	740.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008449, intron 19 of 25)	intron (NM_008449, intron 19 of 25)	-44432.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69515960-2	chr12	69515460	69516460	+	740.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40410.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	10.0	9.0	8.0	19.0	8.5	9.5
Merged-chr12-46857028-3	chr12	46856536	46857536	+	740.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-38261.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50374785-2	chr16	50374285	50375285	+	740.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 2 of 16)	B3A|SINE|B2	57604.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-36097132-3	chr8	36096607	36097607	+	740.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172911, intron 1 of 5)	intron (NM_172911, intron 1 of 5)	2279.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	1.0	1.5	5.0	10.0	3.0	6.0
Merged-chr9-100731970-4	chr9	100731434	100732434	+	740.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009282, intron 3 of 33)	MTC|LTR|ERVL-MaLR	88486.0	NM_001357265	20842.0	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	13.5	14.5	22.5	10.0	15.0	11.0
Merged-chr15-66825586-1	chr15	66825086	66826086	+	740.333313	f0_balb.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	6243.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3264373-3	chr8	3263856	3264856	+	740.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330056, intron 1 of 21)	Lx7|LINE|L1	15261.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	5.0	3.5	0.0	5.5	0.5	0.0
Merged-chr15-81219328-2	chr15	81218817	81219817	+	740.291626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16182.0	NM_145132	207911.0	Mm.323523	NM_145132	ENSMUSG00000050164	Mchr1	AW049955|Gpr24|Mch1r	melanin-concentrating hormone receptor 1	protein-coding	0.0	7.0	0.0	2.5	0.0	1.5
Merged-chr9-95562204-7	chr9	95561608	95562608	+	740.285706	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_198414)	TTS (NM_198414)	2291.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79037811-3	chr8	79037308	79038308	+	740.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 1 of 14)	intron (NM_001294279, intron 1 of 14)	9371.0	NM_178267	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-33115011-4	chr15	33114500	33115500	+	740.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176073, intron 1 of 7)	intron (NM_176073, intron 1 of 7)	31871.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87862912-2	chr1	87862412	87863412	+	740.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_177646, intron 1 of 29)	intron (NM_177646, intron 1 of 29)	-8613.0	NR_136921	100503175.0	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-33901167-3	chr7	33900709	33901709	+	740.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43776.0	NM_178308	110187.0	Mm.155750	NM_178308	ENSMUSG00000066586	Scgb2b26	Abpbg26|Abpbg4|Abpg|C2d|Scgb2b4	secretoglobin, family 2B, member 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-113100875-2	chr11	113100407	113101407	+	740.25	f0_balb.idr|f0_c57.idr	intron (NR_015556, intron 1 of 2)	intron (NR_015556, intron 1 of 2)	100931.0	NR_015556	72386.0	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-82998503-2	chr6	82998041	82999041	+	740.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 4 of 9)	B3|SINE|B2	34930.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	0.0	0.0	0.0	0.0	1.0	0.5
Merged-chr1-55576188-3	chr1	55575667	55576667	+	740.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	170221.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	0.5	0.0	3.5	2.5	6.0	5.5
Merged-chr13-112999039-3	chr13	112998557	112999557	+	740.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001037914, exon 7 of 7)	exon (NM_001037914, exon 7 of 7)	5189.0	NM_001037914	622408.0	Mm.360976	NM_001037914	ENSMUSG00000074651	Mcidas	EG622408|Gm6320|Idas|Mci|Mcin	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr18-57879464-3	chr18	57879006	57880006	+	740.2023929999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009194, exon 1 of 27)	exon (NM_009194, exon 1 of 27)	828.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-9900618-3	chr10	9900127	9901127	+	740.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081344, exon 1 of 26)	exon (NM_001081344, exon 1 of 26)	413.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	1.0	4.5	5.0	0.0	0.0	1.0
Merged-chr3-19904887-3	chr3	19904396	19905396	+	740.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10025.0	NR_027985	70808.0	Mm.427103	NR_027985	ENSMUSG00000048106	4632415L05Rik	AI662792	RRS1 ribosome biogenesis regulator homolog pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-83341509-2	chr13	83341009	83342009	+	740.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-162525.0	NM_001347572	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77801378-4	chr15	77800872	77801872	+	740.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 3 of 40)	intron (NM_022410, intron 3 of 40)	40803.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57337225-2	chr17	57336725	57337725	+	740.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-21461.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98796562-4	chr11	98796091	98797091	+	740.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001361932, exon 1 of 3)	exon (NM_001361932, exon 1 of 3)	1075.0	NM_028722	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-154041076-2	chr1	154040574	154041574	+	740.166626	f0_balb.idr|f0_c57.idr	Intergenic	MLTR14|LTR|ERV1	141145.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-29147027-2	chr10	29146527	29147527	+	740.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_026138, exon 2 of 7)	exon (NM_026138, exon 2 of 7)	3031.0	NM_026138	67412.0	Mm.390264	NM_026138	ENSMUSG00000038916	Soga3	6330407J23Rik	SOGA family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129817872-6	chr4	129817425	129818425	+	740.1611330000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2554.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	65.0	157.0	109.5	53.0	222.0	119.5
Merged-chr17-86685420-4	chr17	86684839	86685839	+	740.141663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68525.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	6.5	6.5	0.0	0.0	6.0	3.5
Merged-chr10-67113112-4	chr10	67112618	67113618	+	740.141663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-14140.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60764105-3	chr18	60763677	60764677	+	740.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-10419.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	7.0	21.5	11.0	2.0	14.0	21.0
Merged-chr2-93418575-4	chr2	93418040	93419040	+	740.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001136055)	TTS (NM_001136055)	3467.0	NR_105967	102465605.0		NR_105967	ENSMUSG00000099238	Mir7001	Gm27886|mmu-mir-7001	microRNA 7001	ncRNA	5.5	5.5	2.5	2.0	0.0	0.0
Merged-chr8-119781735-2	chr8	119781235	119782235	+	740.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-3319.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15778048-2	chr17	15777467	15778467	+	740.075012	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	48619.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	8.0	0.0	0.0	3.5	0.0	0.0
Merged-chr9-47688799-3	chr9	47688298	47689298	+	740.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	129410.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	15.5	28.5	20.5	22.5	37.0	22.0
Merged-chr5-29777373-2	chr5	29776873	29777873	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359198, intron 8 of 8)	intron (NM_001359198, intron 8 of 8)	-41437.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58455019-2	chr13	58454519	58455519	+	740.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51676.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-189700339-1	chr1	189699839	189700839	+	740.0	f1_balb.idr	Intergenic	Intergenic	-12253.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	0.0	0.0	1.5	0.0	0.0	1.0
Merged-chr4-128609091-2	chr4	128608591	128609591	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177758, intron 1 of 7)	intron (NM_177758, intron 1 of 7)	1007.0	NM_177758	269585.0	Mm.153291	NM_177758	ENSMUSG00000061894	Zscan20	C130001F22|Zfp31|Zkscan20	zinc finger and SCAN domains 20	protein-coding	0.0	0.0	2.0	0.0	2.0	2.5
Merged-chr5-139723947-2	chr5	139723447	139724447	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_174850, intron 1 of 16)	B1_Mus2|SINE|Alu	12386.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	0.5	0.5	0.0	0.0	0.0	0.0
Merged-chr13-99138882-2	chr13	99138382	99139382	+	740.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-45941.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	8.5	17.0	11.0	4.0	14.5	14.0
Merged-chr17-28179852-2	chr17	28179352	28180352	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172617, intron 2 of 14)	intron (NM_172617, intron 2 of 14)	2434.0	NM_172617	224656.0	Mm.267359	NM_172617	ENSMUSG00000024220	Zfp523	2810027J07|BC025615|Znf76	zinc finger protein 523	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71591393-3	chr8	71590903	71591903	+	740.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025396)	promoter-TSS (NM_025396)	-781.0	NM_025396	66171.0	Mm.282284	NM_025396	ENSMUSG00000031807	Pgls	1110030K05Rik|AI447866|Plgs	6-phosphogluconolactonase	protein-coding	27.5	101.5	60.5	28.5	54.5	44.5
Merged-chr2-164068466-2	chr2	164067966	164068966	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291155, intron 1 of 6)	intron (NM_001291155, intron 1 of 6)	2636.0	NM_025996	67145.0	Mm.23173	NM_025996	ENSMUSG00000018322	Tomm34	2610100K07Rik|TOM34	translocase of outer mitochondrial membrane 34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42088171-1	chr19	42087671	42088671	+	740.0	f1_balb.idr	Intergenic	Intergenic	-1801.0	NM_198108	226123.0	Mm.259441	NM_198108	ENSMUSG00000049670	Morn4	-	MORN repeat containing 4	protein-coding	4.5	6.0	9.5	0.0	10.5	5.0
Merged-chr19-11816915-1	chr19	11816415	11817415	+	740.0	f0_balb.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	2488.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	4.0	7.0	2.0	3.5	23.0	5.0
Merged-chr4-129855873-1	chr4	129855373	129856373	+	740.0	f1_c57bl6.idr	Intergenic	Intergenic	35165.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	11.5	41.5	31.5	30.0	30.5	18.0
Merged-chr11-49956050-2	chr11	49955550	49956550	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347462, intron 1 of 13)	intron (NM_001347462, intron 1 of 13)	53889.0	NM_001347462	74563.0	Mm.258798	NM_029004	ENSMUSG00000020374	Rasgef1c	9130006A14Rik	RasGEF domain family, member 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44733732-2	chr10	44733232	44734232	+	740.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-274984.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88176159-1	chr17	88175659	88176659	+	740.0	f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	50647.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	1.0	6.5	5.0	1.0	11.5	1.5
Merged-chr2-34671556-2	chr2	34671056	34672056	+	740.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83676.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63385511-1	chr4	63385011	63386011	+	740.0	f0_balb.idr	intron (NM_001045514, intron 6 of 21)	intron (NM_001045514, intron 6 of 21)	12729.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-145951624-1	chr3	145951124	145952124	+	740.0	f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	13610.0	NR_151446	66421.0	Mm.25137	NM_025555	ENSMUSG00000036873	2410004B18Rik	4930572C24Rik	RIKEN cDNA 2410004B18 gene	protein-coding	2.0	0.0	0.5	10.5	0.0	1.5
Merged-chr10-75330343-3	chr10	75329843	75330843	+	740.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009630, intron 2 of 2)	intron (NM_009630, intron 2 of 2)	5485.0	NM_001331096	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172310954-2	chr1	172310458	172311458	+	740.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1409.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	67.5	172.5	98.5	114.5	212.5	101.5
Merged-chr13-82061652-2	chr13	82061152	82062152	+	740.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	278405.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40430073-2	chr12	40429573	40430573	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172575, intron 1 of 12)	intron (NM_172575, intron 1 of 12)	15717.0	NM_172575	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69042323-2	chr11	69041873	69042873	+	740.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-3264.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	0.0	1.0	5.0	0.0	2.0	3.5
Merged-chr14-118816697-3	chr14	118816190	118817190	+	740.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160097, intron 1 of 3)	intron (NM_001160097, intron 1 of 3)	28819.0	NM_001160097	58187.0	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51890396-2	chr14	51889896	51890896	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029990, intron 10 of 13)	B1_Mus1|SINE|Alu	-3214.0	NM_001039676	214922.0	Mm.281343	NM_001039676	ENSMUSG00000072572	Slc39a2	F730005G13Rik|Gm1789|Gm289|Zip2	solute carrier family 39 (zinc transporter), member 2	protein-coding	6.0	0.0	4.0	0.0	0.0	3.5
Merged-chr17-4912432-2	chr17	4911932	4912932	+	740.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82642.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80073493-2	chr7	80072993	80073993	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045695, intron 1 of 2)	intron (NR_045695, intron 1 of 2)	1764.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-5869990-3	chr15	5869535	5870535	+	740.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	174669.0	NR_155428	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117449138-2	chr8	117448638	117449638	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 14 of 20)	intron (NM_028941, intron 14 of 20)	-3885.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95801623-2	chr13	95801124	95802124	+	740.0	f0_balb.idr|f1_balb.idr	intron (NM_027711, intron 2 of 35)	intron (NM_027711, intron 2 of 35)	90298.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	5.5	13.5	5.5	9.0	20.5	6.0
Merged-chr18-61126801-2	chr18	61126301	61127301	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 15 of 21)	intron (NM_001037859, intron 15 of 21)	9333.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	24.0	39.5	14.0	16.5	22.5	15.5
Merged-chr2-153172077-2	chr2	153171577	153172577	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	L1ME1|LINE|L1	10776.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70592896-2	chr8	70592388	70593388	+	740.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007924)	TTS (NM_007924)	-1593.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	0.0	0.0	0.5	1.0	0.0	1.0
Merged-chr10-83943308-2	chr10	83942808	83943808	+	740.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	157389.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-22941552-2	chr2	22941052	22942052	+	740.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001331044, exon 10 of 10)	3' UTR (NM_001331044, exon 10 of 10)	46030.0	NM_001355467	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62675557-2	chr4	62675057	62676057	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310706, intron 1 of 6)	intron (NM_001310706, intron 1 of 6)	1583.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55152595-1	chr16	55152095	55153095	+	740.0	f0_balb.idr	Intergenic	Intergenic	130642.0	NM_178720	239852.0	Mm.245045	NM_178720	ENSMUSG00000064310	Zpld1	9430016A21Rik	zona pellucida like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-39077015-2	chr15	39076515	39077515	+	740.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026778)	promoter-TSS (NM_026778)	83.0	NM_026778	68588.0	Mm.41556	NM_026778	ENSMUSG00000054196	Cthrc1	1110014B07Rik	collagen triple helix repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91481767-2	chr2	91481235	91482235	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 15 of 37)	B1_Mus1|SINE|Alu	24204.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	4.5	0.0	2.5	1.0	3.5	1.0
Merged-chr11-119709006-1	chr11	119708506	119709506	+	740.0	f1_balb.idr	intron (NM_028898, intron 3 of 33)	intron (NM_028898, intron 3 of 33)	106101.0	NM_028898	74370.0	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	19.0	13.0	6.5	1.5	5.5	0.0
Merged-chr19-12430630-3	chr19	12430128	12431128	+	740.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019540, exon 2 of 2)	3' UTR (NM_019540, exon 2 of 2)	2723.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	0.0	2.0	0.5	0.0	16.5	0.0
Merged-chr2-48704550-2	chr2	48704050	48705050	+	740.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109559.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164838839-2	chr2	164838339	164839339	+	740.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011125)	TTS (NM_011125)	5066.0	NM_008906	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	2.5	1.5	4.5	6.5	2.0	8.0
Merged-chr18-64972389-1	chr18	64971889	64972889	+	740.0	f0_balb.idr	intron (NM_001114386, intron 1 of 30)	B4A|SINE|B4	-51138.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.0	0.5	2.0	3.0	3.5	7.0
Merged-chr6-5594669-2	chr6	5594169	5595169	+	740.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98391.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111782609-3	chr10	111782028	111783028	+	740.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	91848.0	NR_046029	629206.0	Mm.391444	NR_046029	ENSMUSG00000112533	Gm20758	-	predicted gene, 20758	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-60250553-2	chr14	60250053	60251053	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362440, intron 1 of 14)	intron (NM_001362440, intron 1 of 14)	926.0	NM_001362440	71844.0	Mm.258051	NM_170591	ENSMUSG00000114797	Nupl1	1700017F11Rik|Nup58|mKIAA0410	nucleoporin like 1	protein-coding	0.0	2.5	0.0	0.0	1.5	0.0
Merged-chr6-34031624-2	chr6	34031124	34032124	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028886, intron 1 of 19)	intron (NM_028886, intron 1 of 19)	2176.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16219654-1	chr7	16219154	16220154	+	740.0	f0_balb.idr	intron (NM_001285931, intron 1 of 16)	intron (NM_001285931, intron 1 of 16)	2339.0	NM_001285931	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	2.0	5.0	7.0	4.0	35.5	18.5
Merged-chr13-10539396-1	chr13	10538896	10539896	+	740.0	f0_balb.idr	Intergenic	Intergenic	-178593.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81309762-1	chr7	81309262	81310262	+	740.0	f1_balb.idr	intron (NM_008803, intron 11 of 21)	intron (NM_008803, intron 11 of 21)	35472.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	3.0	3.5	1.0	1.0	0.0	4.0
Merged-chr11-118251347-2	chr11	118250847	118251847	+	740.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-2755.0	NM_011180	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-85241076-1	chr13	85240576	85241576	+	740.0	f0_balb.idr	intron (NM_145452, intron 8 of 24)	intron (NM_145452, intron 8 of 24)	48410.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	1.0	1.5	1.5	1.0	0.0	0.5
Merged-chr4-120287004-2	chr4	120286504	120287504	+	740.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_194060, exon 1 of 2)	exon (NM_194060, exon 1 of 2)	257.0	NM_194060	329934.0	Mm.277090	NM_194060	ENSMUSG00000052135	Foxo6	-	forkhead box O6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-136217960-2	chr2	136217460	136218460	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360384, intron 2 of 10)	intron (NM_001360384, intron 2 of 10)	160212.0	NM_029530	76161.0	Mm.41638	NM_029530	ENSMUSG00000027270	Lamp5	3110035N03Rik|6330527O06Rik|BAD-LAMP|LAMP-5	lysosomal-associated membrane protein family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88306690-2	chr8	88306190	88307190	+	740.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007406, exon 4 of 28)	exon (NM_007406, exon 4 of 28)	12486.0	NM_001037724	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	1.5	1.0	1.0	0.0	1.5	5.0
Merged-chr11-104379915-2	chr11	104379415	104380415	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 3 of 14)	intron (NM_001359634, intron 3 of 14)	62376.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-4375847-2	chr9	4375347	4376347	+	740.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145609)	promoter-TSS (NM_145609)	-705.0	NM_145609	78100.0	Mm.206549	NM_145609	ENSMUSG00000041124	Msantd4	8430410K20Rik|Mysantd4	Myb/SANT-like DNA-binding domain containing 4 with coiled-coils	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-49749815-2	chr2	49749315	49750315	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008449, intron 22 of 25)	intron (NM_008449, intron 22 of 25)	-37871.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66856753-4	chr9	66856287	66857287	+	740.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 3 of 7)	B1_Mur1|SINE|Alu	-22081.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38417515-2	chr18	38417015	38418015	+	740.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1392.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-118403588-2	chr13	118403047	118404047	+	740.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16295.0	NM_021556	59054.0	Mm.143810	NM_021556	ENSMUSG00000021731	Mrps30	2610020A16Rik|AA968347|PAP|Pdcd9	mitochondrial ribosomal protein S30	protein-coding	0.0	2.5	3.0	0.0	9.0	4.5
Merged-chr1-131274114-2	chr1	131273614	131274614	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019777, intron 5 of 21)	B3|SINE|B2	5449.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	4.0	0.0	0.0	1.0	0.0	0.0
Merged-chr12-102373246-2	chr12	102372746	102373746	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 6 of 9)	intron (NM_177620, intron 6 of 9)	66567.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104792169-4	chr3	104791642	104792642	+	739.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007484, intron 2 of 4)	intron (NM_007484, intron 2 of 4)	3108.0	NM_001291859	11853.0	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107330806-3	chr3	107330268	107331268	+	739.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001045807, exon 1 of 2)	exon (NM_001045807, exon 1 of 2)	2521.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158310884-2	chr2	158310398	158311398	+	739.916626	f0_c57.idr|f1_c57bl6.idr	intron (NM_008489, intron 3 of 14)	intron (NM_008489, intron 3 of 14)	4405.0	NM_008489	16803.0	Mm.218846	NM_008489	ENSMUSG00000016024	Lbp	Bpifd2|Ly88	lipopolysaccharide binding protein	protein-coding	30.5	69.5	23.5	0.0	5.0	1.5
Merged-chr4-141625627-5	chr4	141625357	141626357	+	739.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033150, exon 20 of 20)	3' UTR (NM_001033150, exon 20 of 20)	-2023.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	2.5	10.0	6.5	1.5	13.0	1.0
Merged-chr2-157417433-2	chr2	157416933	157417933	+	739.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6860.0	NM_009271	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0.0	0.0	0.5	4.0	0.0	0.0
Merged-chr4-20024167-2	chr4	20023667	20024667	+	739.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_015767, intron 4 of 4)	intron (NM_015767, intron 4 of 4)	15838.0	NM_015767	50500.0	Mm.24375	NM_015767	ENSMUSG00000073988	Ttpa	alpha-TTP	tocopherol (alpha) transfer protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35913755-2	chr16	35913255	35914255	+	739.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-24715.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6973519-2	chr19	6973019	6974019	+	739.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1529.0	NM_008889	18938.0	Mm.140	NM_008889	ENSMUSG00000056612	Ppp1r14b	AOM172|PHI-1|PLCB3N|Png	protein phosphatase 1, regulatory (inhibitor) subunit 14B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45711704-2	chr17	45711204	45712204	+	739.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	22140.0	NM_028164	72240.0	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-58772239-3	chr6	58771754	58772754	+	739.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59211.0	NM_001361967	73998.0	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8710152-2	chr19	8709652	8710652	+	739.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161413, intron 4 of 9)	intron (NM_001161413, intron 4 of 9)	3745.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-8337086-3	chr6	8336604	8337604	+	739.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302354, intron 2 of 3)	intron (NM_001302354, intron 2 of 3)	77816.0	NM_001302353	100036521.0	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-109493655-3	chr7	109493139	109494139	+	739.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170913)	promoter-TSS (NM_001170913)	99.0	NM_001170913	330627.0	Mm.183528	NM_181853	ENSMUSG00000031026	Trim66	Kiaa0298-hp|Tif1d	tripartite motif-containing 66	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5163123-4	chr18	5162645	5163645	+	739.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153824, exon 3 of 3)	non-coding (NR_153824, exon 3 of 3)	2586.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38944193-3	chr2	38943693	38944693	+	739.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172854, intron 2 of 7)	RLTR17|LTR|ERVK	12213.0	NM_172854	241327.0	Mm.103491	NM_172854	ENSMUSG00000046618	Olfml2a	4932431K08Rik|mFLJ00237	olfactomedin-like 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80572165-2	chr10	80571665	80572665	+	739.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_078477, intron 1 of 1)	intron (NM_078477, intron 1 of 1)	5131.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81341739-3	chr10	81341227	81342227	+	739.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148951, intron 1 of 5)	intron (NM_148951, intron 1 of 5)	1539.0	NM_148951	209047.0	Mm.218755	NM_148951	ENSMUSG00000034872	Gipc3	Ahl5|Rgs19ip3	GIPC PDZ domain containing family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60600408-2	chr18	60599908	60600908	+	739.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001109975, exon 2 of 2)	3' UTR (NM_001109975, exon 2 of 2)	-8692.0	NM_133363	170947.0	Mm.159257	NM_133363	ENSMUSG00000049173	Myoz3	4833419K08Rik|Fatz-3	myozenin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180272487-2	chr2	180271987	180272987	+	739.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_145851, intron 1 of 9)	intron (NM_145851, intron 1 of 9)	978.0	NM_145851	252966.0	Mm.386884	NM_145851	ENSMUSG00000038990	Cables2	ik3-2	CDK5 and Abl enzyme substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102223791-6	chr7	102223265	102224265	+	739.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111938, intron 2 of 4)	PB1D10|SINE|Alu	737.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	8.0	20.0	15.5	23.0	28.0	19.0
Merged-chr1-161552234-4	chr1	161551719	161552719	+	739.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57562.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	1.5	2.5	5.5	3.0	4.0	1.5
Merged-chr4-133918594-3	chr4	133918103	133919103	+	739.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR10-int|LTR|ERVK	-30806.0	NM_009097	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99044581-3	chr7	99044084	99045084	+	739.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 6 of 14)	intron (NM_178635, intron 6 of 14)	96560.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	19.5	4.0	12.0	14.5	11.5	19.0
Merged-chr13-104286499-3	chr13	104285998	104286998	+	739.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1337.0	NR_136938	108154.0	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-65569526-2	chr1	65569026	65570026	+	739.700012	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR10|LTR|ERVK	258269.0	NM_139270	213527.0	Mm.294225	NM_139270	ENSMUSG00000025946	Pth2r	Pthr2	parathyroid hormone 2 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4257690-3	chr18	4257193	4258193	+	739.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91861.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-43297429-3	chr6	43296912	43297912	+	739.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12142.0	NM_130869	18291.0	Mm.17715	NM_130869	ENSMUSG00000029736	Nobox	OG2|Og2x	NOBOX oogenesis homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-144277447-3	chr5	144276938	144277938	+	739.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040432, intron 1 of 2)	intron (NR_040432, intron 1 of 2)	377.0	NR_040432	100504231.0	Mm.441035	NR_040432	ENSMUSG00000086894	Gm15708	-	predicted gene 15708	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-44275475-3	chr2	44275000	44276000	+	739.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 12 of 14)	intron (NM_001301831, intron 12 of 14)	-210176.0	NR_040622	320872.0	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-99019659-3	chr4	99019143	99020143	+	739.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026082, intron 16 of 47)	intron (NM_026082, intron 16 of 47)	-11311.0	NM_013913	30924.0	Mm.28341	NM_013913	ENSMUSG00000028553	Angptl3	hypl	angiopoietin-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-137685515-3	chr6	137685019	137686019	+	739.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36234.0	NM_007945	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64267329-3	chr7	64266831	64267831	+	739.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039104, intron 26 of 26)	MTEa|LTR|ERVL-MaLR	-17232.0	NR_105844	102465226.0		NR_105844	ENSMUSG00000098910	Mir6416	Gm27746|mmu-mir-6416	microRNA 6416	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78305102-2	chr15	78304602	78305602	+	739.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001287389, intron 1 of 11)	intron (NM_001287389, intron 1 of 11)	619.0	NM_007781	12984.0	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7438480-3	chr19	7437984	7438984	+	739.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053076, intron 1 of 6)	intron (NM_053076, intron 1 of 6)	15911.0	NR_105957	102466781.0		NR_105957	ENSMUSG00000098293	Mir6991	Gm27966|mmu-mir-6991	microRNA 6991	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-57801992-1	chr11	57801492	57802492	+	739.666687	f0_balb.idr	promoter-TSS (NR_131042)	promoter-TSS (NR_131042)	355.0	NM_001081168	50724.0	Mm.340083	NM_001081168	ENSMUSG00000020519	Sap30l	2310079P12Rik|AF006998|L55	SAP30-like	protein-coding	6.5	1.5	4.0	0.0	2.5	0.5
Merged-chr7-143039916-2	chr7	143039422	143040422	+	739.666687	f1_balb.idr|f1_c57bl6.idr	intron (NR_110355, intron 2 of 4)	MLT2B3|LTR|ERVL	-12828.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	1.0	3.5	0.0	4.5	20.0	6.0
Merged-chr9-83565481-2	chr9	83564978	83565978	+	739.666626	f0_balb.idr|f1_balb.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	17140.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	6.0	12.5	5.5	23.0	5.0	20.0
Merged-chr2-32842739-2	chr2	32842239	32843239	+	739.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113569, intron 1 of 19)	B3A|SINE|B2	4493.0	NM_009295	20910.0	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-41536040-2	chr5	41535540	41536540	+	739.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	171651.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	3.5	18.5	4.5	1.5	1.5	7.5
Merged-chr10-80164466-2	chr10	80163966	80164966	+	739.625	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-3373.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71476850-3	chr6	71476332	71477332	+	739.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17045.0	NM_009543	22644.0	Mm.422969	NM_009543	ENSMUSG00000052656	Rnf103	AW146237|AW212918|Zfp103|kf-1	ring finger protein 103	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-13679505-2	chr6	13679005	13680005	+	739.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1539.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	5.5	3.5	1.0	6.5	4.5	5.5
Merged-chr15-93335968-4	chr15	93335485	93336485	+	739.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028315, intron 2 of 4)	intron (NR_028315, intron 2 of 4)	950.0	NR_028315	67057.0	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-34712680-3	chr12	34712199	34713199	+	739.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	MIR|SINE|MIR	-183810.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	36.0	113.0	55.5	41.5	86.0	65.0
Merged-chr17-50996061-3	chr17	50995541	50996541	+	739.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 3 of 21)	intron (NM_028162, intron 3 of 21)	163337.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	3.5	7.0	6.0	6.5	5.5	7.5
Merged-chr4-62667398-4	chr4	62666914	62667914	+	739.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134257, intron 10 of 15)	intron (NM_134257, intron 10 of 15)	-6560.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122685448-4	chr10	122684948	122685948	+	739.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	6133.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	4.0	15.0	2.0	6.5	9.0	7.5
Merged-chr14-51157045-3	chr14	51156593	51157593	+	739.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-5167.0	NM_019398	54159.0	Mm.377125	NM_019398	ENSMUSG00000059606	Rnase2b	Ear5|Raf4|mR5	ribonuclease, RNase A family, 2B (liver, eosinophil-derived neurotoxin)	protein-coding	21.5	29.5	18.0	14.5	17.5	7.0
Merged-chr5-88513480-2	chr5	88512980	88513980	+	739.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	14417.0	NM_152839	16069.0	Mm.1192	NM_152839	ENSMUSG00000067149	Jchain	9530090F24Rik|AI323815|Igj|Jch	immunoglobulin joining chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73424993-2	chr15	73424493	73425493	+	739.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1802.0	NM_001358045	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-58322771-3	chr14	58322221	58323221	+	739.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	250035.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43592613-2	chr19	43592113	43593113	+	739.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19712.0	NM_008699	18089.0	Mm.56994	NM_008699	ENSMUSG00000044220	Nkx2-3	Nkx-2.3|Nkx2.3|tinman	NK2 homeobox 3	protein-coding	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120521235-2	chr5	120520735	120521735	+	739.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 7 of 13)	intron (NM_001177595, intron 7 of 13)	10043.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167780785-2	chr2	167780285	167781285	+	739.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89608.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19165361-2	chr3	19164861	19165861	+	739.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2266.0	NM_001357689	74252.0	Mm.200383	NM_028840	ENSMUSG00000027599	Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-136701998-2	chr3	136701498	136702498	+	739.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	31932.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77684845-2	chr11	77684345	77685345	+	739.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1294.0	NM_001024205	68564.0	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-32480409-2	chr6	32479909	32480909	+	739.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-30732.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-86961232-2	chr3	86960760	86961760	+	739.5	f0_balb.idr|f1_balb.idr	Intergenic	RMER4B|LTR|ERVK	-25326.0	NM_001289449	12480.0	Mm.389465	NM_007640	ENSMUSG00000041750	Cd1d2	CD1.2|Cd1b|Ly-38	CD1d2 antigen	protein-coding	18.5	1.5	9.0	22.5	20.5	51.5
Merged-chr16-49937938-2	chr16	49937438	49938438	+	739.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17892.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4531898-4	chr8	4531401	4532401	+	739.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38496.0	NM_026058	67260.0	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113154597-2	chr12	113154081	113155081	+	739.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007763)	TTS (NM_007763)	-1840.0	NM_134041	104732.0	Mm.87616	NM_134041	ENSMUSG00000037466	Tedc1	4930427A07Rik|AA536649|mFLJ00116	tubulin epsilon and delta complex 1	protein-coding	29.5	50.0	30.5	23.5	30.0	27.5
Merged-chr8-70350435-2	chr8	70349935	70350935	+	739.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030680, intron 1 of 23)	intron (NM_030680, intron 1 of 23)	2844.0	NM_030680	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83775169-2	chr17	83774669	83775669	+	739.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 8 of 16)	RSINE1|SINE|B4	69006.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27351095-2	chr2	27350595	27351595	+	739.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 1 of 29)	RMER19B|LTR|ERVK	76513.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-83006252-2	chr18	83005752	83006752	+	739.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177464)	TTS (NM_001177464)	-85692.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125035917-2	chr6	125035417	125036417	+	739.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252083, intron 10 of 10)	intron (NM_001252083, intron 10 of 10)	-3931.0	NM_133345	28019.0	Mm.262547	NM_133345	ENSMUSG00000030330	Ing4	D6Wsu147e|D6Xrf92|p29ING4	inhibitor of growth family, member 4	protein-coding	0.0	0.0	0.5	0.0	1.0	0.5
Merged-chr2-170508462-2	chr2	170507962	170508962	+	739.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040367, intron 1 of 2)	intron (NR_040367, intron 1 of 2)	-2768.0	NM_001110152	109054.0	Mm.28808	NM_001013369	ENSMUSG00000052033	Pfdn4	0610025M10Rik|1810063B06Rik|C-1|C1|Pfd4	prefoldin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-36572808-2	chr3	36572308	36573308	+	739.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027810)	TTS (NM_027810)	230.0	NM_009828	12428.0	Mm.4189	NM_009828	ENSMUSG00000027715	Ccna2	AA408589|Ccn-1|Ccn1|Ccna|CycA2|Cyca	cyclin A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115167142-1	chr11	115166642	115167642	+	739.5	f1_c57bl6.idr	intron (NM_012030, intron 1 of 5)	intron (NM_012030, intron 1 of 5)	3801.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	2.5	10.0	14.0	3.5	4.5	7.0
Merged-chr5-140996114-2	chr5	140995614	140996614	+	739.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175362, intron 1 of 24)	B1_Mus1|SINE|Alu	4482.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	1.0	0.0	1.5	0.0	9.0	0.0
Merged-chr11-119055523-2	chr11	119055023	119056023	+	739.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14610.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54646583-2	chr14	54646119	54647119	+	739.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019567, intron 5 of 12)	intron (NM_019567, intron 5 of 12)	-3509.0	NR_105913	102466771.0		NR_105913	ENSMUSG00000106169	Mir6948	mmu-mir-6948	microRNA 6948	ncRNA	4.5	5.5	0.5	1.0	0.0	4.0
Merged-chr5-124717778-2	chr5	124717278	124718278	+	739.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011596, intron 15 of 19)	intron (NM_011596, intron 15 of 19)	-7307.0	NM_019536	56087.0	Mm.261014	NM_019536	ENSMUSG00000038011	Dnah10	Dnahc10	dynein, axonemal, heavy chain 10	protein-coding	1.5	0.5	4.5	1.5	0.5	4.5
Merged-chr8-105277892-2	chr8	105277392	105278392	+	739.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030152, intron 1 of 3)	B1_Mus1|SINE|Alu	1445.0	NM_030152	78688.0	Mm.475715	NM_030152	ENSMUSG00000014776	Nol3	ARC|B430311C09Rik|MYC|NOP|Nop30	nucleolar protein 3 (apoptosis repressor with CARD domain)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58142064-2	chr15	58141584	58142584	+	739.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029734, intron 1 of 5)	MIR|SINE|MIR	718.0	NM_001326599	76773.0	Mm.26771	NM_029734	ENSMUSG00000022359	Wdyhv1	2410187C16Rik|AU014961|AW550036|Ntaq1	WDYHV motif containing 1	protein-coding	26.5	56.0	39.5	61.0	165.5	121.0
Merged-chr3-68710626-2	chr3	68710126	68711126	+	739.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	19202.0	NM_008351	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64383019-2	chr5	64382519	64383519	+	739.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	84923.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73480028-2	chr2	73479528	73480528	+	739.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	B4|SINE|B4	5725.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19223092-2	chr7	19222592	19223592	+	739.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_175668, exon 2 of 2)	exon (NM_175668, exon 2 of 2)	-5297.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	0.0	0.0	2.0	2.0	7.0	0.0
Merged-chr13-111886157-1	chr13	111885657	111886657	+	739.5	f1_c57bl6.idr	Intergenic	Intergenic	18221.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	1.5	1.0	6.5	0.0	1.0	0.5
Merged-chr3-3032300-2	chr3	3031801	3032801	+	739.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-475729.0	NM_013920	30942.0	Mm.330897	NM_013920	ENSMUSG00000017688	Hnf4g	NR2A2	hepatocyte nuclear factor 4, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85901722-2	chr1	85901222	85902222	+	739.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022417, intron 1 of 5)	intron (NM_022417, intron 1 of 5)	7212.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134185491-2	chr5	134184991	134185991	+	739.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359852, intron 1 of 14)	intron (NM_001359852, intron 1 of 14)	1453.0	NM_053266	114674.0	Mm.218744	NM_053266	ENSMUSG00000015942	Gtf2ird2	1700012P16Rik	GTF2I repeat domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53904004-2	chr4	53903504	53904504	+	739.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	77959.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	0.0	0.0	6.0	0.0	0.0	1.0
Merged-chr5-121396925-2	chr5	121396388	121397388	+	739.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	-1094.0	NM_172722	231713.0	Mm.33919	NM_172722	ENSMUSG00000042719	Naa25	4833422K13Rik|A630046C11|AI450868|C330023M02Rik|Mdm20	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding	2.0	4.0	5.5	1.5	5.5	5.0
Merged-chr5-103836369-2	chr5	103835869	103836869	+	739.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133919, intron 11 of 19)	RMER10A|LTR|ERVL	74890.0	NM_001359987	246293.0	Mm.179871	NM_178741	ENSMUSG00000029312	Klhl8	2310001P09Rik|D5Ertd431e	kelch-like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152749702-2	chr3	152749202	152750202	+	739.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025662, intron 9 of 10)	intron (NM_025662, intron 9 of 10)	35602.0	NM_025662	329777.0	Mm.331447	NM_025662	ENSMUSG00000039047	Pigk	3000001O05Rik|Gm38470|PIG-K	phosphatidylinositol glycan anchor biosynthesis, class K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79119014-2	chr12	79118514	79119514	+	739.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-11774.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	0.0	1.0	0.0	0.0	0.5	0.0
Merged-chr9-43286910-2	chr9	43286410	43287410	+	739.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23853.0	NM_023655	72169.0	Mm.273277	NM_023655	ENSMUSG00000032013	Trim29	1110047J21Rik|2810431N19Rik|4732461M22Rik|AI119726	tripartite motif-containing 29	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr15-72832221-1	chr15	72831721	72832721	+	739.5	f1_balb.idr	intron (NM_001164641, intron 17 of 17)	intron (NM_001164641, intron 17 of 17)	-21897.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	2.0	10.5	4.0	3.5	3.0	0.0
Merged-chr1-191325369-2	chr1	191324869	191325869	+	739.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025864)	promoter-TSS (NM_025864)	-596.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	23.0	39.5	48.5	29.5	42.5	36.5
Merged-chr14-77848583-3	chr14	77848084	77849084	+	739.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025384, intron 3 of 5)	ORR1B2|LTR|ERVL-MaLR	26333.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	8.5	42.5	18.5	0.5	17.5	13.5
Merged-chr3-18613614-3	chr3	18613149	18614149	+	739.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-133172.0	NR_040544	73959.0	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88667976-4	chr8	88667471	88668471	+	739.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 4 of 12)	intron (NM_145857, intron 4 of 12)	20624.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	62.5	255.0	125.5	47.0	248.5	146.5
Merged-chr5-134237231-2	chr5	134236731	134237731	+	739.416626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001080749)	TTS (NM_001080749)	-7606.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117889861-2	chr5	117889361	117890361	+	739.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 2 of 27)	intron (NM_008712, intron 2 of 27)	23022.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	1.0	0.0	0.5	0.0	0.0	1.5
Merged-chr11-103172318-4	chr11	103171827	103172827	+	739.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019679, intron 1 of 26)	intron (NM_019679, intron 1 of 26)	1189.0	NM_019679	57778.0	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86966787-2	chr11	86966287	86967287	+	739.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005341, intron 2 of 4)	intron (NM_001005341, intron 2 of 4)	26975.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100205397-2	chr12	100204897	100205897	+	739.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313934, intron 3 of 5)	intron (NM_001313934, intron 3 of 5)	5253.0	NM_001313934	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-48775620-2	chr11	48775120	48776120	+	739.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24740.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85500816-2	chr12	85500316	85501316	+	739.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26926.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23149966-2	chr11	23149466	23150466	+	739.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2174.0	NR_131065	76993.0	Mm.59224	NR_131065	ENSMUSG00000086366	1700061J23Rik	-	RIKEN cDNA 1700061J23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101239200-2	chr15	101238700	101239700	+	739.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14014.0	NR_045328	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	0.0	1.0	2.0	2.5	0.0	1.5
Merged-chr14-75847916-2	chr14	75847416	75848416	+	739.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028481)	promoter-TSS (NR_028481)	-7.0	NR_028481	100303751.0	Mm.484707	NR_028481	ENSMUSG00000065147	Snora31	MBI-161	small nucleolar RNA, H/ACA box 31	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36580794-2	chr5	36580224	36581224	+	739.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113362, intron 2 of 14)	intron (NM_001113362, intron 2 of 14)	1673.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	1.0	9.5	3.5	0.0	8.0	3.5
Merged-chr10-81575311-2	chr10	81574811	81575811	+	739.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252401)	promoter-TSS (NM_001252401)	24.0	NM_001252401	21886.0	Mm.38608	NM_019725	ENSMUSG00000034771	Tle2	Grg2|mKIAA4188	transducin-like enhancer of split 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37421461-3	chr9	37420971	37421971	+	739.31665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001164767, exon 16 of 28)	exon (NM_001164767, exon 16 of 28)	11704.0	NM_001164767	19649.0	Mm.212826	NM_011248	ENSMUSG00000032128	Robo3	Rbig1|Rig-1|Rig1|Robo3a|Robo3b	roundabout guidance receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-68277158-3	chr8	68276696	68277696	+	739.291687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028182, intron 1 of 8)	intron (NM_028182, intron 1 of 8)	668.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95136025-3	chr8	95135538	95136538	+	739.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010631, intron 2 of 19)	(TTTTG)n|Simple_repeat|Simple_repeat	6502.0	NM_010631	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	18.0	20.5	18.0	10.5	15.5	5.5
Merged-chr6-89323015-2	chr6	89322515	89323515	+	739.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008881, intron 27 of 31)	intron (NM_008881, intron 27 of 31)	-37290.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91253711-2	chr1	91253211	91254211	+	739.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355764, intron 1 of 10)	intron (NM_001355764, intron 1 of 10)	3145.0	NM_001355764	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15536190-7	chr17	15535807	15536807	+	739.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9006.0	NM_008799	18567.0	Mm.323	NM_008799	ENSMUSG00000014771	Pdcd2	AI528543|Pcd2|RP-8	programmed cell death 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154837405-2	chr4	154836910	154837910	+	739.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18790.0	NM_172878	242800.0	Mm.72944	NM_172878	ENSMUSG00000046637	Ttc34	4932418L02|B230396O12Rik	tetratricopeptide repeat domain 34	protein-coding	2.0	0.0	1.5	1.0	0.0	6.5
Merged-chr10-93356345-2	chr10	93355844	93356844	+	739.25	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	20133.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	4.5	8.5	7.5	26.5	16.5	32.0
Merged-chr4-150237867-4	chr4	150237335	150238335	+	739.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023119, intron 1 of 11)	intron (NM_023119, intron 1 of 11)	511.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	96.5	81.5	131.0	75.5	119.5	82.5
Merged-chr15-12319021-2	chr15	12318521	12319521	+	739.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-2475.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81021126-2	chr10	81020626	81021626	+	739.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145217, exon 2 of 2)	3' UTR (NM_145217, exon 2 of 2)	4251.0	NM_145217	208666.0	Mm.44995	NM_145217	ENSMUSG00000043670	Diras1	Di-Ras1|Gbts1|RIG	DIRAS family, GTP-binding RAS-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32485130-3	chr18	32484602	32485602	+	739.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74932.0	NM_001048207	71683.0	Mm.292145	NM_027863	ENSMUSG00000090523	Gypc	0610037F22Rik|Cd236r	glycophorin C	protein-coding	2.5	0.0	1.0	5.5	0.0	2.0
Merged-chr1-132054583-4	chr1	132054084	132055084	+	739.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114662, intron 3 of 9)	B3|SINE|B2	13478.0	NM_172510	213006.0	Mm.208445	NM_172510	ENSMUSG00000059149	Mfsd4a	A230072B04|A930031D07Rik|AI850289|Mfsd4	major facilitator superfamily domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47348716-4	chr14	47348181	47349181	+	739.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-25179.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	10.5	51.0	33.5	32.0	36.5	49.0
Merged-chr7-81274493-3	chr7	81273989	81274989	+	739.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 1 of 21)	L1M3|LINE|L1	60685.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118604149-3	chr10	118603657	118604657	+	739.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-47632.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	0.0	8.5	2.5	3.0	6.0	4.5
Merged-chr3-87243854-3	chr3	87243385	87244385	+	739.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19639.0	NM_030707	80891.0	Mm.45173	NM_030707	ENSMUSG00000015852	Fcrls	2810439C17Rik|9330158F12|FcRH2sc|Fcrh2|IFGP2|IgSR|MMAN-g|Msr2|moFcRH2sc	Fc receptor-like S, scavenger receptor	protein-coding	4.5	2.5	8.5	0.0	4.0	1.5
Merged-chr12-16868902-3	chr12	16868416	16869416	+	739.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26062.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	19.0	31.0	25.0	17.5	60.0	64.5
Merged-chr9-108993397-2	chr9	108992897	108993897	+	739.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 1 of 13)	intron (NR_153430, intron 1 of 13)	1495.0	NR_153430	270198.0	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181931238-4	chr2	181930726	181931726	+	739.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60000.0	NM_001205282	672125.0	Mm.489571	NM_001205282	ENSMUSG00000098505	Gm14496	-	predicted gene 14496	protein-coding	0.0	0.0	1.5	0.0	0.0	1.5
Merged-chr2-158641954-2	chr2	158641454	158642454	+	739.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3371.0	NR_037312	100499529.0		NR_037312	ENSMUSG00000093120	Mir3474	mir-3474|mmu-mir-3474	microRNA 3474	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69043020-2	chr11	69042520	69043520	+	739.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2617.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	0.0	1.0	5.0	0.0	2.0	3.5
Merged-chr2-180041127-2	chr2	180040627	180041627	+	739.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011969, intron 1 of 6)	B4A|SINE|B4	1337.0	NM_001289476	26444.0	Mm.21728	NM_011969	ENSMUSG00000027566	Psma7	C6-I	proteasome (prosome, macropain) subunit, alpha type 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-99185903-2	chr4	99185405	99186405	+	739.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-8029.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	75.5	184.5	113.5	35.5	85.0	77.0
Merged-chr2-26638165-2	chr2	26637665	26638665	+	739.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028572)	promoter-TSS (NR_028572)	-180.0	NR_028572	100306955.0	Mm.27103	NR_028572	ENSMUSG00000097052	Snora43	ACA43	small nucleolar RNA, H/ACA box 43	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25720093-4	chr7	25719595	25720595	+	739.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1042.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133203607-4	chr4	133203109	133204109	+	739.145813	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7954.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	5.5	13.0	22.0	12.0	30.5	25.5
Merged-chr6-72136926-2	chr6	72136426	72137426	+	739.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 3 of 6)	intron (NM_001035228, intron 3 of 6)	-13729.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-64945937-3	chr8	64945460	64946460	+	739.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1225.0	NM_001163747	73067.0	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167188978-8	chr2	167188507	167189507	+	739.104187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008420)	promoter-TSS (NM_008420)	-189.0	NM_008420	16500.0	Mm.205341	NM_008420	ENSMUSG00000050556	Kcnb1	Kcr1-1|Kv2.1|Shab	potassium voltage gated channel, Shab-related subfamily, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58462793-2	chr16	58462293	58463293	+	739.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356484, intron 13 of 15)	intron (NM_001356484, intron 13 of 15)	54258.0	NM_028523	73379.0	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112308923-4	chr13	112308456	112309456	+	739.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168404, intron 2 of 7)	intron (NM_001168404, intron 2 of 7)	20438.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-125111477-2	chr4	125110977	125111977	+	739.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151472, exon 8 of 8)	non-coding (NR_151472, exon 8 of 8)	16404.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11739023-2	chr2	11738523	11739523	+	739.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	33311.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119339874-3	chr11	119339378	119340378	+	739.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130886, intron 18 of 21)	B3|SINE|B2	15632.0	NM_018822	27029.0	Mm.103788	NM_018822	ENSMUSG00000005043	Sgsh	4632406A19Rik	N-sulfoglucosamine sulfohydrolase (sulfamidase)	protein-coding	0.0	0.0	1.0	3.5	0.5	2.5
Merged-chr8-72273370-2	chr8	72272870	72273870	+	739.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33352.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	11.0	15.0	10.0	6.5	30.0	15.0
Merged-chr7-28349084-2	chr7	28348584	28349584	+	739.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1605.0	NM_013647	20055.0	Mm.702	NM_013647	ENSMUSG00000037563	Rps16	AA420385|AI317031	ribosomal protein S16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127205116-2	chr2	127204616	127205616	+	739.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198630, intron 1 of 1)	intron (NM_198630, intron 1 of 1)	3164.0	NM_198630	329509.0	Mm.120738	NM_198630	ENSMUSG00000044145	1810024B03Rik	-	RIKEN cDNA 1810024B03 gene	protein-coding	0.0	5.0	0.0	0.0	5.5	6.0
Merged-chr5-99378569-2	chr5	99378069	99379069	+	739.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-125642.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74367272-2	chr1	74366772	74367772	+	739.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033345, intron 7 of 9)	PB1D7|SINE|Alu	5164.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-40608573-1	chr8	40608073	40609073	+	739.0	f0_c57.idr	intron (NM_001040699, intron 2 of 13)	Lx8|LINE|L1	26219.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	11.5	18.0	1.5	10.0	5.5	1.5
Merged-chr7-45028532-2	chr7	45028039	45029039	+	739.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175022, exon 14 of 14)	exon (NM_175022, exon 14 of 14)	8942.0	NM_001360133	20130.0	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	0.0	0.5	0.0	0.0	1.0	0.0
Merged-chr13-82810211-1	chr13	82809711	82810711	+	739.0	f1_c57bl6.idr	Intergenic	ORR1A4-int|LTR|ERVL-MaLR	-111878.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-45240817-1	chr3	45240317	45241317	+	739.0	f0_balb.idr	Intergenic	Intergenic	137443.0	NR_045172	72511.0	Mm.140700	NR_045172	ENSMUSG00000097040	2610316D01Rik	-	RIKEN cDNA 2610316D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-19854235-1	chr13	19853735	19854735	+	739.0	f0_balb.idr	Intergenic	Intergenic	-29978.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	2.0	1.0	1.5	0.0	12.0	8.5
Merged-chr1-131092862-2	chr1	131092362	131093362	+	739.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	4981.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	7.0	5.0	10.0	3.5	11.0	10.0
Merged-chr4-135495180-1	chr4	135494680	135495680	+	739.0	f0_balb.idr	promoter-TSS (NM_028995)	promoter-TSS (NM_028995)	-211.0	NM_001361484	74552.0	Mm.26548	NM_028995	ENSMUSG00000028803	Nipal3	9130020G22Rik|AI480660|Npal3	NIPA-like domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95689169-1	chr9	95688669	95689669	+	739.0	f0_balb.idr	intron (NM_029620, intron 6 of 8)	intron (NM_029620, intron 6 of 8)	51541.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73684852-2	chr12	73684352	73685352	+	739.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	100056.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112641768-2	chr12	112641268	112642268	+	739.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007421)	TTS (NM_007421)	-3060.0	NM_001161737	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34840708-2	chr17	34840208	34841208	+	739.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_021337, exon 24 of 28)	exon (NM_021337, exon 24 of 28)	1163.0	NR_105937	102466777.0		NR_105937	ENSMUSG00000098458	Mir6971	Gm27307|mmu-mir-6971	microRNA 6971	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20643742-2	chr9	20643242	20644242	+	739.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013911)	promoter-TSS (NM_013911)	406.0	NM_025401	66177.0	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-72159552-2	chr16	72159052	72160052	+	739.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	74775.0	NR_131116	319533.0	Mm.373754	NR_131115		8030451O07Rik	-	RIKEN cDNA 8030451O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113851909-1	chr5	113851409	113852409	+	739.0	f1_c57bl6.idr	intron (NM_011779, intron 4 of 10)	intron (NM_011779, intron 4 of 10)	-21408.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0.0	1.5	0.0	0.0	0.5	0.5
Merged-chr2-158502488-1	chr2	158501988	158502988	+	739.0	f1_balb.idr	promoter-TSS (NM_145635)	promoter-TSS (NM_145635)	-124.0	NM_145635	246747.0	Mm.28800	NM_145635	ENSMUSG00000044405	Adig	SMAF-1|Smaf1	adipogenin	protein-coding	2.5	1.0	0.0	2.0	0.0	4.5
Merged-chr2-25385960-2	chr2	25385460	25386460	+	739.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	-9914.0	NM_009849	12496.0	Mm.482100	NM_009849	ENSMUSG00000015085	Entpd2	Cd39l1|NTPDase2	ectonucleoside triphosphate diphosphohydrolase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74438859-2	chr11	74438359	74439359	+	739.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 4 of 24)	intron (NM_001015046, intron 4 of 24)	74188.0	NM_001011851	258153.0	Mm.376124	NM_001011851	ENSMUSG00000058275	Olfr412	MOR127-5P	olfactory receptor 412	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116369843-2	chr11	116369343	116370343	+	739.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027258, intron 2 of 18)	BGLII_B|LTR|ERVK	-34489.0	NM_008240	15223.0	Mm.378938	NM_008240	ENSMUSG00000034227	Foxj1	FKHL-13|HFH-4|Hfh4	forkhead box J1	protein-coding	0.0	6.5	1.5	0.0	4.5	2.0
Merged-chr9-108690890-2	chr9	108690390	108691390	+	739.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1253.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	13.5	30.5	9.5	19.5	20.5	11.0
Merged-chr14-30592334-1	chr14	30591834	30592834	+	739.0	f1_balb.idr	Intergenic	RLTR12E|LTR|ERVK	17976.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	23.5	34.5	32.0	5.0	17.0	18.0
Merged-chr9-14174156-1	chr9	14173656	14174656	+	739.0	f0_balb.idr	Intergenic	Intergenic	-102145.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155628513-2	chr2	155627965	155628965	+	739.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085378, intron 25 of 41)	intron (NM_001085378, intron 25 of 41)	5585.0	NR_030757	735275.0		NR_030757	ENSMUSG00000076312	Mir499	Mirn499|mir-499|mmu-mir-499	microRNA 499	ncRNA	0.0	6.5	0.0	0.0	2.5	5.0
Merged-chr6-86609367-2	chr6	86608867	86609867	+	739.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18807.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35774508-1	chr16	35774008	35775008	+	739.0	f1_c57bl6.idr	intron (NR_152314, intron 1 of 8)	intron (NR_152314, intron 1 of 8)	4122.0	NM_175111	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	4.0	4.0	0.0	0.0	0.0	3.5
Merged-chr12-101976889-1	chr12	101976389	101977389	+	739.0	f0_balb.idr	intron (NM_016856, intron 1 of 14)	intron (NM_016856, intron 1 of 14)	915.0	NM_016856	51786.0	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	3.0	17.0	7.0	5.5	3.0	1.5
Merged-chr15-102463991-2	chr15	102463491	102464491	+	739.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4821.0	NM_025385	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168593179-3	chr2	168592678	168593678	+	739.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291169, intron 1 of 10)	intron (NM_001291169, intron 1 of 10)	-2813.0	NM_001136073	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	2.5	0.5	0.5	2.5	1.5	2.0
Merged-chr3-101598383-2	chr3	101597883	101598883	+	739.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	6324.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-137910452-1	chr1	137909952	137910952	+	739.0	f0_balb.idr	Intergenic	Intergenic	-56003.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114657938-2	chr11	114657438	114658438	+	739.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10605.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-31519637-1	chr10	31519137	31520137	+	739.0	f0_balb.idr	intron (NM_001146349, intron 2 of 5)	ORR1E|LTR|ERVL-MaLR	-73679.0	NM_001359366	21987.0	Mm.439966	NM_009413	ENSMUSG00000000296	Tpd52l1	D53	tumor protein D52-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117476168-3	chr11	117475676	117476676	+	739.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8192.0	NR_130966	432615.0	Mm.126359	NR_130966	ENSMUSG00000069588	Gm11733	-	predicted gene 11733	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156182299-2	chr2	156181799	156182799	+	739.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-2061.0	NM_133242	170791.0	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding	19.5	1.5	2.0	22.5	6.5	8.0
Merged-chr11-98709988-2	chr11	98709488	98710488	+	739.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361995, intron 18 of 25)	intron (NM_001361995, intron 18 of 25)	8675.0	NM_009971	12985.0	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-63919622-2	chr7	63919106	63920106	+	739.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001256311, intron 2 of 2)	intron (NM_001256311, intron 2 of 2)	2749.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	2.0	18.5	2.5	1.0	0.0	0.0
Merged-chr19-5687237-2	chr19	5686735	5687735	+	739.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144868, intron 2 of 34)	intron (NM_144868, intron 2 of 34)	1673.0	NM_144868	104401.0	Mm.329650	NM_144868	ENSMUSG00000054874	Pcnx3	Pcnxl3|mKIAA4073	pecanex homolog 3	protein-coding	0.0	2.5	0.5	0.0	0.0	1.0
Merged-chr12-69532742-1	chr12	69532242	69533242	+	739.0	f0_c57.idr	Intergenic	Intergenic	50286.0	NM_001033236	207965.0	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	3.5	1.5	2.0	0.5	0.0	3.5
Merged-chr6-113283398-2	chr6	113282898	113283898	+	739.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_170673, exon 4 of 20)	exon (NM_170673, exon 4 of 20)	1091.0	NM_170673	211232.0	Mm.65597	NM_170673	ENSMUSG00000030270	Cpne9	A730016F12Rik|mKIAA4217	copine family member IX	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6741384-2	chr17	6740884	6741884	+	739.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 10 of 12)	intron (NM_009510, intron 10 of 12)	35554.0	NM_183368	83672.0	Mm.442201	NM_031395	ENSMUSG00000041831	Sytl3	A430092N21|Slp3|Slp3-a|Slp3-b|mFLJ00307	synaptotagmin-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-86781927-2	chr10	86781427	86782427	+	739.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175331, intron 1 of 13)	intron (NM_175331, intron 1 of 13)	2922.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-83847170-2	chr12	83846670	83847670	+	739.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_073564, intron 3 of 12)	intron (NR_073564, intron 3 of 12)	-4812.0	NM_010949	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84427416-1	chr8	84426916	84427916	+	739.0	f1_balb.idr	intron (NM_001252060, intron 1 of 47)	ORR1D2|LTR|ERVL-MaLR	12052.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	1.0	0.0	0.0	8.0	3.0	9.0
Merged-chr4-147520250-2	chr4	147519750	147520750	+	739.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33027.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	1.0	0.0	0.0	1.0	0.0	0.0
Merged-chr9-109921484-3	chr9	109920996	109921996	+	739.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10278.0	NM_001205331	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31823061-2	chr2	31822561	31823561	+	739.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178887, intron 4 of 6)	intron (NM_178887, intron 4 of 6)	-12481.0	NM_183424	227717.0	Mm.185027	NM_183424	ENSMUSG00000043102	Qrfp	P518	pyroglutamylated RFamide peptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99741813-1	chr12	99741313	99742313	+	739.0	f0_c57.idr	intron (NM_030172, intron 5 of 5)	Lx9|LINE|L1	-113839.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26492593-2	chr2	26492093	26493093	+	739.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 2 of 33)	intron (NM_008714, intron 2 of 33)	11229.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-148722426-1	chr6	148721926	148722926	+	739.0	f0_balb.idr	Intergenic	Intergenic	-44426.0	NR_131024	75831.0	Mm.159595	NR_131024	ENSMUSG00000084909	4930528G23Rik	-	RIKEN cDNA 4930528G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24643177-4	chr16	24642675	24643675	+	739.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-78680.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-59127146-4	chr3	59126652	59127652	+	738.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287119, intron 1 of 2)	Charlie1|DNA|hAT-Charlie	3610.0	NM_001287124	140795.0	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69119078-3	chr8	69118606	69119606	+	738.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21847.0	NM_199364	211134.0	Mm.409446	NM_199364	ENSMUSG00000036306	Lzts1	F37|FEZ1|PSD-Zip70	leucine zipper, putative tumor suppressor 1	protein-coding	3.5	6.0	6.0	13.0	9.5	9.5
Merged-chr7-79368880-4	chr7	79368388	79369388	+	738.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18139.0	NM_020599	19771.0	Mm.41653	NM_020599	ENSMUSG00000039194	Rlbp1	3110056M11Rik|CRALBP	retinaldehyde binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5608873-2	chr19	5608373	5609373	+	738.900024	f1_balb.idr|f1_c57bl6.idr	exon (NM_178637, exon 5 of 14)	exon (NM_178637, exon 5 of 14)	834.0	NR_037603	81601.0	Mm.228930	NM_178637	ENSMUSG00000024926	Kat5	AI839539|CPLA2|Htatip|Htatip1|PLIP|Tip55|Tip60	K(lysine) acetyltransferase 5	protein-coding	1.0	0.5	0.0	0.0	0.0	0.0
Merged-chr4-126227644-4	chr4	126227165	126228165	+	738.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24955.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	20.0	25.5	28.0	17.5	28.0	22.0
Merged-chr2-102946232-3	chr2	102945735	102946735	+	738.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44570.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113544825-3	chr13	113544328	113545328	+	738.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR52|LTR|ERVL	-41984.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-136750153-3	chr3	136749647	136750647	+	738.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	80081.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-107565817-3	chr1	107565303	107566303	+	738.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24203.0	NM_011459	20725.0	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding	0.0	6.5	0.0	0.0	0.0	0.0
Merged-chr9-65573615-2	chr9	65573115	65574115	+	738.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 1 of 5)	intron (NM_153119, intron 1 of 5)	6472.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6726320-4	chr2	6725816	6726816	+	738.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 3 of 15)	intron (NM_001110232, intron 3 of 15)	-4654.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-122858131-4	chr4	122857699	122858699	+	738.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001358036)	TTS (NM_001358036)	21972.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	3.5	17.5	1.5	5.5	8.0	2.5
Merged-chr8-82867871-2	chr8	82867393	82868393	+	738.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 1 of 6)	MTD|LTR|ERVL-MaLR	4537.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	1.0	4.0	3.5	4.5	4.0	6.5
Merged-chr17-34345076-2	chr17	34344523	34345523	+	738.833374	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_010381)	promoter-TSS (NM_010381)	-378.0	NM_010381	100504404.0	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	0.0	5.0	2.0	24.0	112.0	36.5
Merged-chr13-112767742-3	chr13	112767275	112768275	+	738.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33002.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0.0	2.0	0.0	2.0	3.0	0.5
Merged-chr19-55562780-3	chr19	55562291	55563291	+	738.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	139413.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128746521-2	chr10	128746021	128747021	+	738.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1358.0	NM_030100	78428.0	Mm.27358	NM_030100	ENSMUSG00000064030	Pym1	A030010B05Rik|Pym|Wibg	PYM homolog 1, exon junction complex associated factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67247489-2	chr17	67246989	67247989	+	738.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	106970.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.0	3.5	0.5	2.5	12.5	0.0
Merged-chr2-35545135-5	chr2	35544599	35545599	+	738.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13359.0	NM_001114125	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-166153579-4	chr1	166153051	166154051	+	738.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021610, intron 3 of 6)	intron (NM_021610, intron 3 of 6)	23330.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94343492-3	chr8	94343010	94344010	+	738.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019415, intron 13 of 24)	intron (NM_019415, intron 13 of 24)	14302.0	NM_001205311	20497.0	Mm.25804	NM_019415	ENSMUSG00000031766	Slc12a3	AI035291|NCC|NCCT|TSC	solute carrier family 12, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-22186586-3	chr10	22186048	22187048	+	738.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	12646.0	NM_009018	19370.0	Mm.439724	NM_009018		Raet1c	RAE-1gamma	retinoic acid early transcript gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-21959095-4	chr3	21958598	21959598	+	738.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117554.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27695314-2	chr2	27694814	27695814	+	738.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-13978.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60826893-2	chr11	60826393	60827393	+	738.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31D_MM|LTR|ERVK	-3738.0	NM_001172112	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-19849395-2	chr4	19848895	19849895	+	738.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30668.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-31900761-4	chr11	31900314	31901314	+	738.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290678, intron 2 of 7)	intron (NM_001290678, intron 2 of 7)	29874.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	4.0	27.0	7.5	8.5	0.5	5.5
Merged-chr16-91785859-4	chr16	91785350	91786350	+	738.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 4 of 15)	intron (NM_001110276, intron 4 of 15)	56479.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	5.5	4.0	9.0	1.0	2.0	1.0
Merged-chr2-129617363-2	chr2	129616957	129617957	+	738.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355158, intron 5 of 8)	MIR3|SINE|MIR	21995.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	1.5	0.0	0.0	0.0	0.5	0.5
Merged-chr16-57526721-3	chr16	57526228	57527228	+	738.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	ID_B1|SINE|B4	-22514.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	14.5	24.5	5.5	13.5	8.5	14.0
Merged-chr17-84978666-3	chr17	84978164	84979164	+	738.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159498, intron 2 of 7)	intron (NM_001159498, intron 2 of 7)	13639.0	NM_001159498	19043.0	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74322841-4	chr1	74322323	74323323	+	738.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039509, intron 2 of 9)	B1_Mus2|SINE|Alu	-9787.0	NM_019999	56695.0	Mm.384726	NM_019999	ENSMUSG00000026179	Pnkd	2210013N15Rik|2810403H05Rik|AI854243|Brp17|MNCb-5687|MR-1|Tahccp2	paroxysmal nonkinesiogenic dyskinesia	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54737872-3	chr6	54737379	54738379	+	738.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56255.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50001011-3	chr6	50000485	50001485	+	738.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109256.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr19-3914107-2	chr19	3913607	3914607	+	738.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_026316, intron 9 of 9)	intron (NM_026316, intron 9 of 9)	-1333.0	NM_001271444	225887.0	Mm.44227	NM_144870	ENSMUSG00000059734	Ndufs8	BC021616|CI-23kD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-84429751-2	chr11	84429251	84430251	+	738.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_019816, intron 12 of 12)	intron (NM_019816, intron 12 of 12)	83750.0	NM_019816	56321.0	Mm.257482	NM_019816	ENSMUSG00000018697	Aatf	4933415H02Rik|5830465M17Rik|Che-1|Trb	apoptosis antagonizing transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137788488-2	chr5	137787988	137788988	+	738.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005426, intron 1 of 16)	CpG	686.0	NM_001005426	381678.0	Mm.332765	NM_001005426	ENSMUSG00000037108	Zcwpw1	Gm1053	zinc finger, CW type with PWWP domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-77170007-2	chr2	77169507	77170507	+	738.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025576, intron 1 of 23)	intron (NM_001025576, intron 1 of 23)	628.0	NM_001025576	545428.0	Mm.26579	NM_001025576	ENSMUSG00000044033	Ccdc141	2610301F02Rik|CAMDI	coiled-coil domain containing 141	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32956478-3	chr19	32955957	32956957	+	738.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	198880.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33372782-3	chr16	33372280	33373280	+	738.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	7956.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-59953062-4	chr1	59952563	59953563	+	738.545837	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037725, intron 3 of 7)	intron (NM_001037725, intron 3 of 7)	40057.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	4.0	11.0	0.5	2.0	4.5	12.5
Merged-chr6-39567737-4	chr6	39567216	39568216	+	738.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6160.0	NM_178873	57869.0	Mm.247957	NM_178873	ENSMUSG00000046947	Adck2	AA408112|BB006057	aarF domain containing kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128697649-2	chr10	128697149	128698149	+	738.541626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_016756)	TTS (NM_016756)	-1381.0	NM_177411	19344.0	Mm.12815	NM_011229	ENSMUSG00000000711	Rab5b	C030027M18Rik	RAB5B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150865532-2	chr4	150865032	150866032	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356323, intron 3 of 3)	intron (NM_001356323, intron 3 of 3)	10462.0	NM_133753	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31124367-2	chr2	31123867	31124867	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 1 of 15)	B1_Mur1|SINE|Alu	17641.0	NM_001355106	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-50756966-2	chr5	50756466	50757466	+	738.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	504204.0	NR_106197	102465903.0		NR_106197	ENSMUSG00000099124	Mir8117	Gm27323|mmu-mir-8117	microRNA 8117	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49240544-2	chr13	49240044	49241044	+	738.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_025491, exon 2 of 5)	exon (NM_025491, exon 2 of 5)	7750.0	NM_001360772	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-26603683-2	chr19	26603183	26604183	+	738.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1477.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-72940383-2	chr11	72939883	72940883	+	738.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-20786.0	NM_016745	53313.0	Mm.6306	NM_016745	ENSMUSG00000020788	Atp2a3	SERCA3b|Serca3	ATPase, Ca++ transporting, ubiquitous	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60768432-2	chr2	60767932	60768932	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 6 of 14)	intron (NM_001141932, intron 6 of 14)	-45829.0	NM_001159564	16420.0	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-149285440-2	chr5	149284940	149285940	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009663, intron 4 of 4)	intron (NM_009663, intron 4 of 4)	20436.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70707528-2	chr8	70707064	70708064	+	738.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9825.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	0.0	10.0	2.0	0.0	5.0	2.0
Merged-chr8-120368431-2	chr8	120367931	120368931	+	738.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120435.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-69509595-2	chr18	69509092	69510092	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 5 of 19)	intron (NM_001361128, intron 5 of 19)	163432.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-103067638-2	chr13	103067138	103068138	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 3 of 28)	intron (NM_175171, intron 3 of 28)	266854.0	NM_175171	328329.0	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-44843897-2	chr18	44843397	44844397	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163013, intron 7 of 29)	intron (NM_001163013, intron 7 of 29)	15232.0	NM_001163013	240255.0	Mm.244482	NM_001163013	ENSMUSG00000034653	Ythdc2	3010002F02Rik|BC037178	YTH domain containing 2	protein-coding	3.0	14.5	0.0	0.0	4.5	0.0
Merged-chr11-120315353-2	chr11	120314853	120315853	+	738.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32060.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	0.0	4.0	0.0	0.0	0.0	0.0
Merged-chr2-170217076-2	chr2	170216576	170217576	+	738.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-74401.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17407779-2	chr16	17407279	17408279	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023348, intron 1 of 4)	ID_B1|SINE|B4	-1465.0	NM_001001983	224020.0	Mm.5718	NM_001001983	ENSMUSG00000041720	Pi4ka	Pik4ca	phosphatidylinositol 4-kinase alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128658260-2	chr8	128657760	128658760	+	738.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-27394.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101843857-2	chr7	101843357	101844357	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303239, intron 2 of 5)	intron (NM_001303239, intron 2 of 5)	1474.0	NM_001303231	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78351890-4	chr10	78351333	78352333	+	738.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053014)	promoter-TSS (NM_053014)	-133.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85249191-1	chr1	85248691	85249691	+	738.5	f1_balb.idr	intron (NM_175219, intron 6 of 7)	intron (NM_175219, intron 6 of 7)	21375.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170127920-2	chr2	170127420	170128420	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159683, intron 2 of 6)	intron (NM_001159683, intron 2 of 6)	3300.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.0	0.0	0.0	1.5	4.5	2.0
Merged-chr17-55960295-2	chr17	55959795	55960795	+	738.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_108021)	promoter-TSS (NR_108021)	-894.0	NR_108021	100504333.0	Mm.391908	NR_108021	ENSMUSG00000097077	Gm16712	-	predicted gene, 16712	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-151367841-2	chr5	151367341	151368341	+	738.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045699)	promoter-TSS (NR_045699)	-834.0	NR_045700	625175.0	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121378014-2	chr5	121377514	121378514	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359947, intron 5 of 11)	intron (NM_001359947, intron 5 of 11)	7395.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139294722-2	chr7	139294222	139295222	+	738.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46240.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	0.0	0.0	0.0	1.0	4.0	0.0
Merged-chr6-30051187-2	chr6	30050687	30051687	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164226, intron 1 of 11)	B3|SINE|B2	3199.0	NM_001164227	18181.0	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	1.5	0.0	0.5	0.0	1.0	4.5
Merged-chr4-53101350-2	chr4	53100850	53101850	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 7 of 49)	intron (NM_013454, intron 7 of 49)	58545.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19103514-2	chr7	19103014	19104014	+	738.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8970.0	NM_011383	20475.0	Mm.3410	NM_011383	ENSMUSG00000040841	Six5	Dmahp|MDMAHP|TrexBF	sine oculis-related homeobox 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-41337173-2	chr5	41336675	41337675	+	738.5	f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	370516.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	0.0	0.0	2.0	0.0	0.5	0.5
Merged-chr9-41083517-2	chr9	41083017	41084017	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	-4011.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	5.0	2.5	9.5	7.0	3.0	5.5
Merged-chr5-29836890-2	chr5	29836390	29837390	+	738.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	-100954.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32593122-2	chr4	32592622	32593622	+	738.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	9260.0	NM_010289	14610.0	Mm.377084	NM_010289	ENSMUSG00000051056	Gja10	Cx-57|Cx59|cx57	gap junction protein, alpha 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7866663-2	chr9	7866163	7867163	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007464, intron 1 of 8)	intron (NM_007464, intron 1 of 8)	6507.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63375480-2	chr4	63374980	63375980	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 15 of 21)	intron (NM_001045514, intron 15 of 21)	13031.0	NM_011016	18406.0	Mm.14173	NM_011016	ENSMUSG00000061540	Orm2	Agp1|Orm-2	orosomucoid 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65330254-2	chr5	65329754	65330754	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011258, intron 1 of 24)	intron (NM_011258, intron 1 of 24)	5385.0	NM_011258	19687.0	Mm.148877	NM_011258	ENSMUSG00000029191	Rfc1	140kDa|Alp145|RFC140|Recc1	replication factor C (activator 1) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25446119-2	chr8	25445619	25446619	+	738.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-72640.0	NM_001079909	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-76666728-2	chr3	76666228	76667228	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253719, intron 15 of 15)	intron (NM_001253719, intron 15 of 15)	591145.0	NM_001253719	213262.0	Mm.379337	NM_178673	ENSMUSG00000034098	Fstl5	9130207J01Rik	follistatin-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108847023-2	chr9	108846523	108847523	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359572, intron 33 of 35)	intron (NM_001359572, intron 33 of 35)	-7020.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	0.5	3.0	2.5	1.0	4.0	2.5
Merged-chr15-73061883-2	chr15	73061383	73062383	+	738.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_180662)	promoter-TSS (NM_180662)	-679.0	NM_001164643	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	7.0	13.0	13.0	4.5	4.0	9.0
Merged-chr15-64258017-2	chr15	64257517	64258517	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	54656.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-10167608-2	chr11	10167108	10168108	+	738.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-946408.0	NM_177033	319922.0	Mm.337851	NM_177033	ENSMUSG00000050830	Vwc2	A930041G11Rik|G11|PSST739|UNQ739|cradin	von Willebrand factor C domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117709112-4	chr10	117708616	117709616	+	738.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001288586, intron 2 of 10)	intron (NM_001288586, intron 2 of 10)	1642.0	NM_010786	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	6.5	1.5	6.0	6.5	2.0	6.0
Merged-chr2-162958465-4	chr2	162957934	162958934	+	738.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081338, intron 8 of 22)	intron (NM_001081338, intron 8 of 22)	14969.0	NM_001081338	241764.0	Mm.187086	NM_001081338	ENSMUSG00000035576	L3mbtl1	C630004G01|L3mbtl|mKIAA0681	L3MBTL1 histone methyl-lysine binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77799451-3	chr18	77798959	77799959	+	738.466675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 1 of 14)	B1F|SINE|Alu	-3069.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-83622005-4	chr2	83621468	83622468	+	738.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-22610.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119309440-4	chr13	119308960	119309960	+	738.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	99551.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-71806667-4	chr9	71806198	71807198	+	738.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-35096.0	NM_001304362	68178.0	Mm.99961	NM_026599	ENSMUSG00000032232	Cgnl1	4933421H10Rik|9930020M10Rik|AI503810|Jacop	cingulin-like 1	protein-coding	0.0	1.0	0.5	0.0	0.0	0.0
Merged-chr4-133671158-6	chr4	133670630	133671630	+	738.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356466, intron 1 of 3)	intron (NM_001356466, intron 1 of 3)	1517.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	32.5	19.5	22.0	10.5	51.0	14.5
Merged-chr6-30173386-3	chr6	30172875	30173875	+	738.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126541, intron 1 of 1)	CpG	750.0	NR_126540	101447999.0		NR_126540		Mirc35hg	-	microRNA cluster 35, host gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34334511-3	chr19	34334014	34335014	+	738.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43855.0	NM_001146708	14102.0	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	8.0	0.0	0.5	0.0	0.0	0.0
Merged-chr2-158157503-2	chr2	158157003	158158003	+	738.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11111.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133005444-4	chr4	133004933	133005933	+	738.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6073.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	18.0	0.5	0.5	2.5	0.0	4.5
Merged-chr4-141598861-4	chr4	141598418	141599418	+	738.375	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133754, intron 1 of 8)	intron (NM_133754, intron 1 of 8)	1006.0	NM_001163256	74202.0	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	1.5	2.5	0.0	0.0	0.0	4.0
Merged-chr6-137169656-2	chr6	137169155	137170155	+	738.375	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164212)	promoter-TSS (NM_001164212)	63.0	NM_001164214	232441.0	Mm.46233	NM_181988	ENSMUSG00000030222	Rerg	-	RAS-like, estrogen-regulated, growth-inhibitor	protein-coding	1.5	1.0	2.0	0.0	0.0	0.0
Merged-chr10-112927029-3	chr10	112926480	112927480	+	738.355591	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033474, exon 1 of 1)	3' UTR (NM_001033474, exon 1 of 1)	2046.0	NM_001033474	382423.0	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132	ataxin 7-like 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98075667-4	chr11	98075283	98076283	+	738.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22321.0	NM_146028	217154.0	Mm.181008	NM_146028	ENSMUSG00000017400	Stac2	24b2|24b2/STAC2|AW240854	SH3 and cysteine rich domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-37316996-4	chr6	37316476	37317476	+	738.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17000.0	NM_001347104	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101980653-2	chr11	101980153	101981153	+	738.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028207, intron 2 of 2)	intron (NM_028207, intron 2 of 2)	4138.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	14.5	49.0	58.0	19.5	20.0	15.0
Merged-chr14-57684810-3	chr14	57684311	57685311	+	738.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-19855.0	NM_020506	57258.0	Mm.202747	NM_020506	ENSMUSG00000021952	Xpo4	B430309A01Rik|mKIAA1721	exportin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124911735-3	chr6	124911254	124912254	+	738.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008479)	promoter-TSS (NM_008479)	-49.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119781156-2	chr8	119780656	119781656	+	738.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2740.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30954149-2	chr14	30953649	30954649	+	738.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308328, intron 2 of 13)	intron (NM_001308328, intron 2 of 13)	2772.0	NM_011849	23955.0	Mm.251494	NM_011849	ENSMUSG00000021918	Nek4	Stk2	NIMA (never in mitosis gene a)-related expressed kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51057617-3	chr14	51057117	51058117	+	738.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001011875)	promoter-TSS (NM_001011875)	-375.0	NM_001011875	497106.0	Mm.379740	NM_001011875	ENSMUSG00000068407	Rnase12	Rai1	ribonuclease, RNase A family, 12 (non-active)	protein-coding	16.5	7.5	10.0	21.5	9.0	8.0
Merged-chr7-48894416-3	chr7	48893957	48894957	+	738.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12861.0	NM_001360812	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-4853679-3	chr5	4853188	4854188	+	738.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 14 of 14)	intron (NM_011074, intron 14 of 14)	-95472.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29438478-2	chr17	29437978	29438978	+	738.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52567.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	2.0	8.5	0.0	5.0	0.0	2.5
Merged-chr19-46452592-3	chr19	46452065	46453065	+	738.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 6 of 11)	intron (NM_001025391, intron 6 of 11)	-49083.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81781449-3	chr13	81780951	81781951	+	738.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1796.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121931555-3	chr8	121931065	121932065	+	738.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007608, intron 2 of 6)	MTC|LTR|ERVL-MaLR	13347.0	NM_007608	12352.0	Mm.116761	NM_007608	ENSMUSG00000025317	Car5a	CAV|Ca5a|Car5	carbonic anhydrase 5a, mitochondrial	protein-coding	7.0	1.0	3.0	0.0	3.5	4.0
Merged-chr19-17126212-4	chr19	17125835	17126835	+	738.3125	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181348, intron 9 of 19)	intron (NM_181348, intron 9 of 19)	170217.0	NM_181348	353211.0	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	18.0	55.5	44.5	54.0	45.0	30.5
Merged-chr15-81830787-2	chr15	81830287	81831287	+	738.299988	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	19373.0	NM_017376	21685.0	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	2.5	7.0	1.5	1.0	4.0	0.5
Merged-chr16-42169931-3	chr16	42169434	42170434	+	738.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361282, intron 10 of 10)	intron (NM_001361282, intron 10 of 10)	133535.0	NR_105858	102466172.0		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141134342-3	chr7	141133842	141134842	+	738.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013782, intron 1 of 11)	intron (NM_013782, intron 1 of 11)	3056.0	NM_013782	27388.0	Mm.293591	NM_013782	ENSMUSG00000025495	Ptdss2	AI481134|AI988017|PSS2	phosphatidylserine synthase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-82917191-3	chr8	82916911	82917911	+	738.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 1 of 6)	intron (NM_177378, intron 1 of 6)	54055.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	12.5	3.0	19.5	24.0	37.0	47.0
Merged-chr7-110645571-2	chr7	110645071	110646071	+	738.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17914.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118688551-3	chr9	118688010	118689010	+	738.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 13 of 27)	intron (NM_133721, intron 13 of 27)	-23182.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.5	3.0	9.0	4.0	7.5	9.5
Merged-chr4-135310447-2	chr4	135309947	135310947	+	738.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37687.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-51076040-3	chr9	51075555	51076555	+	738.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033534, intron 2 of 7)	intron (NM_001033534, intron 2 of 7)	1039.0	NM_001033534	244864.0	Mm.335152	NM_001033534	ENSMUSG00000060594	Layn	E030012M19Rik|Gm511	layilin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111312439-2	chr9	111311939	111312939	+	738.214294	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164659, intron 1 of 21)	CpG	700.0	NM_001164659	320429.0	Mm.270754	NM_001164659	ENSMUSG00000062296	Trank1	A230061D21Rik|C030048J01Rik|Gm187|Lba1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding	0.0	0.0	1.5	2.5	0.0	2.5
Merged-chr13-67516199-1	chr13	67515699	67516699	+	738.200012	f0_c57.idr	3' UTR (NM_133228, exon 4 of 4)	3' UTR (NM_133228, exon 4 of 4)	10032.0	NM_133228	170763.0	Mm.491205	NM_133228	ENSMUSG00000097333	Zfp87	2210039O17Rik|4631412O18Rik|KRAB4|Mzf22|Zfp72	zinc finger protein 87	protein-coding	3.5	13.0	4.0	1.5	8.0	2.5
Merged-chr18-3495670-2	chr18	3495170	3496170	+	738.200012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12287.0	NM_026505	68010.0	Mm.284863	NM_026505	ENSMUSG00000024232	Bambi	2610003H06Rik	BMP and activin membrane-bound inhibitor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135520433-3	chr7	135519914	135520914	+	738.188904	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178669, intron 1 of 2)	intron (NM_178669, intron 1 of 2)	8240.0	NM_178669	212070.0	Mm.39721	NM_178669	ENSMUSG00000050866	Clrn3	AI649392|Tmem12	clarin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-52605481-4	chr12	52604953	52605953	+	738.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3131.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	37.5	60.5	37.5	44.5	82.0	50.5
Merged-chr2-169756480-3	chr2	169755951	169756951	+	738.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	122805.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	1.5	2.5	1.5	0.0	2.5	1.5
Merged-chr3-89091956-2	chr3	89091456	89092456	+	738.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_001083807, exon 2 of 10)	exon (NM_001083807, exon 2 of 10)	1407.0	NM_001083807	72296.0	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88424805-3	chr1	88424302	88425302	+	738.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029269, intron 7 of 7)	intron (NM_029269, intron 7 of 7)	17792.0	NM_029269	75396.0	Mm.173058	NM_029269	ENSMUSG00000026295	Spp2	0610038O04Rik|pp-24|spp24	secreted phosphoprotein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103680090-3	chr14	103679574	103680574	+	738.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198014, intron 2 of 6)	intron (NM_198014, intron 2 of 6)	19358.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-127813696-2	chr8	127813196	127814196	+	738.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	464529.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57784126-2	chr10	57783626	57784626	+	738.166687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021272)	promoter-TSS (NM_021272)	-797.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106527439-2	chr8	106526939	106527939	+	738.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007665, intron 2 of 15)	intron (NM_007665, intron 2 of 15)	16587.0	NM_001037809	12560.0	Mm.4658	NM_007665	ENSMUSG00000061048	Cdh3	AI385538|Cadp|Cdhp|P-cadherin|Pcad	cadherin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19119230-2	chr7	19118730	19119730	+	738.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175530)	promoter-TSS (NM_175530)	-629.0	NM_175530	243867.0	Mm.230830	NM_175530	ENSMUSG00000050428	Fbxo46	20D7-FC4|4932704E22Rik|Fbxo34l	F-box protein 46	protein-coding	0.0	0.0	0.5	2.0	2.0	1.0
Merged-chr2-167491760-2	chr2	167491260	167492260	+	738.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030743)	promoter-TSS (NM_030743)	-885.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6374055-2	chr19	6373555	6374555	+	738.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_011750, exon 10 of 13)	exon (NM_011750, exon 10 of 13)	-10353.0	NM_011224	19309.0	Mm.27806	NM_011224	ENSMUSG00000032648	Pygm	AI115133|PG	muscle glycogen phosphorylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40221147-4	chr12	40220663	40221663	+	738.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013562, intron 1 of 11)	intron (NM_013562, intron 1 of 11)	1648.0	NR_035459	100316693.0		NR_035459	ENSMUSG00000089371	Mir1938	mir-1938|mmu-mir-1938	microRNA 1938	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24437424-2	chr17	24436924	24437924	+	738.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_010023, intron 5 of 6)	intron (NM_010023, intron 5 of 6)	5677.0	NM_025718	66705.0	Mm.29017	NM_025718	ENSMUSG00000024136	Dnase1l2	4733401H14Rik	deoxyribonuclease 1-like 2	protein-coding	0.0	6.5	0.0	11.0	0.0	7.0
Merged-chr19-41764991-3	chr19	41764501	41765501	+	738.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18040.0	NR_040320	100502871.0	Mm.394485	NR_040320		Gm19424	-	predicted gene, 19424	ncRNA	22.0	61.5	31.0	3.0	7.0	3.5
Merged-chr3-106497044-5	chr3	106496575	106497575	+	738.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001093754, intron 8 of 11)	intron (NM_001093754, intron 8 of 11)	11035.0	NM_028110	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	4.5	8.5	13.0	2.5	12.5	8.5
Merged-chr2-180347336-3	chr2	180346796	180347796	+	738.022217	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12617.0	NM_008093	14464.0	Mm.388880	NM_008093	ENSMUSG00000015627	Gata5	-	GATA binding protein 5	protein-coding	0.5	0.0	0.0	2.0	1.5	2.5
Merged-chr11-50229928-2	chr11	50229428	50230428	+	738.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145926, intron 1 of 14)	intron (NM_145926, intron 1 of 14)	-2317.0	NR_105884	102466765.0		NR_105884	ENSMUSG00000098474	Mir6919	Gm27889|mmu-mir-6919	microRNA 6919	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61317178-2	chr14	61316678	61317678	+	738.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7425.0	NM_177337	219144.0	Mm.206566	NM_177337	ENSMUSG00000043157	Arl11	ARLTS1|C730007L20Rik	ADP-ribosylation factor-like 11	protein-coding	0.0	0.0	5.0	0.0	0.0	0.0
Merged-chr11-77465181-2	chr11	77464681	77465681	+	738.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139129, intron 1 of 8)	intron (NM_139129, intron 1 of 8)	1268.0	NM_139130	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-42835006-3	chr15	42834500	42835500	+	738.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-158023.0	NM_009640	11600.0	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47403353-2	chr14	47402853	47403853	+	738.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144553, intron 10 of 18)	B3|SINE|B2	15054.0	NM_144553	218977.0	Mm.240543	NM_144553	ENSMUSG00000037544	Dlgap5	C77459|C86398|Dap-5|Dlg7|Hurp|mKIAA0008	DLG associated protein 5	protein-coding	8.0	2.0	0.0	15.5	0.0	1.0
Merged-chr7-75783284-2	chr7	75782784	75783784	+	738.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65054.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	1.5	0.0	2.5	0.0	3.0	6.5
Merged-chr7-110919924-2	chr7	110919424	110920424	+	738.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194464, intron 10 of 20)	L1MB3|LINE|L1	14939.0	NR_045267	100504184.0	Mm.441327	NR_045267	ENSMUSG00000087160	Gm16336	-	predicted gene 16336	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45708414-4	chr17	45707907	45708907	+	738.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22058.0	NM_026732	68463.0	Mm.379158	NM_026732	ENSMUSG00000023939	Mrpl14	1110006I11Rik|AI846816|MRP-L32|Rpml32	mitochondrial ribosomal protein L14	protein-coding	17.5	5.5	4.0	14.0	5.5	0.0
Merged-chr10-95494426-2	chr10	95493926	95494926	+	738.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026065, intron 3 of 5)	RMER16|LTR|ERVK	7523.0	NM_001359476	67270.0	Mm.30008	NM_026065	ENSMUSG00000062981	Mrpl42	2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|L42mt|MRP-L31|MRP-L42|MRP-S32|PTD007|Rpml31|S32mt	mitochondrial ribosomal protein L42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93602599-2	chr2	93602099	93603099	+	738.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39835.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100850738-2	chr7	100850238	100851238	+	738.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358914, intron 5 of 10)	intron (NM_001358914, intron 5 of 10)	12675.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-13933757-2	chr14	13933257	13934257	+	738.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR1B-int|LTR|ERV1	27556.0	NM_001285780	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	2.5	0.0	3.0	2.0	0.0	1.5
Merged-chr6-136547239-1	chr6	136546739	136547739	+	738.0	f0_balb.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	28388.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	8.5	14.5	3.5	4.0	10.5	13.5
Merged-chr19-9966417-2	chr19	9965917	9966917	+	738.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14183.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-78626956-2	chr16	78626456	78627456	+	738.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50268.0	NM_025967	67102.0	Mm.37332	NM_025967	ENSMUSG00000022864	D16Ertd472e	1700010I10Rik|2310009O17Rik|E330003K22Rik|Eurl	DNA segment, Chr 16, ERATO Doi 472, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25804236-2	chr15	25803736	25804736	+	738.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001353142, intron 14 of 20)	intron (NM_001353142, intron 14 of 20)	30223.0	NM_001353141	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31292507-2	chr15	31292007	31293007	+	738.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027496, exon 4 of 4)	3' UTR (NM_027496, exon 4 of 4)	68122.0	NM_146057	223453.0	Mm.222867	NM_146057	ENSMUSG00000039168	Dap	4921531N22Rik|AI789753|AU040360	death-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156568314-1	chr1	156567814	156568814	+	738.0	f1_balb.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	9527.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	12.5	22.0	12.5	1.0	2.0	10.0
Merged-chr5-125465192-2	chr5	125464692	125465692	+	738.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10681.0	NM_030210	78894.0	Mm.431573	NM_030210	ENSMUSG00000029482	Aacs	2210408B16Rik|SUR5	acetoacetyl-CoA synthetase	protein-coding	2.0	2.0	4.0	3.5	2.0	3.0
Merged-chr11-116218861-2	chr11	116218365	116219365	+	738.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_004853, intron 6 of 6)	intron (NR_004853, intron 6 of 6)	2863.0	NR_004853	69681.0	Mm.33677	NR_004853	ENSMUSG00000092300	Cdk3-ps	2310050O10Rik|Cdk3	cyclin-dependent kinase 3, pseudogene	pseudo	0.0	0.0	0.0	7.0	0.0	0.0
Merged-chr7-102001331-2	chr7	102000831	102001831	+	738.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133947, exon 14 of 25)	exon (NM_133947, exon 14 of 25)	16824.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100187790-2	chr7	100187256	100188256	+	738.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9073.0	NM_001190871	57442.0	Mm.282386	NM_020574	ENSMUSG00000035165	Kcne3	2210017H05Rik|MiRP2	potassium voltage-gated channel, Isk-related subfamily, gene 3	protein-coding	0.0	0.0	0.0	2.0	0.0	0.0
Merged-chr1-172527786-1	chr1	172527286	172528286	+	738.0	f1_c57bl6.idr	intron (NM_027972, intron 1 of 11)	intron (NM_027972, intron 1 of 11)	6656.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	4.0	3.5	2.0	2.5	6.0	3.5
Merged-chr2-31716818-2	chr2	31716318	31717318	+	738.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001283047, intron 2 of 11)	intron (NM_001283047, intron 2 of 11)	28281.0	NM_001283046	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81703301-3	chr13	81702789	81703789	+	738.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081176, intron 1 of 7)	intron (NM_001081176, intron 1 of 7)	7724.0	NM_001081176	67486.0	Mm.279781	NM_001081176	ENSMUSG00000035834	Polr3g	2310047G20Rik|AV275904|RPC32|RPC7	polymerase (RNA) III (DNA directed) polypeptide G	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr2-21034618-2	chr2	21034118	21035118	+	738.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	65744.0	NR_033225	433408.0	Mm.386941	NR_033225		Gm13375	-	predicted gene 13375	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76672444-1	chr15	76671944	76672944	+	738.0	f1_balb.idr	intron (NR_152559, intron 1 of 8)	intron (NR_152559, intron 1 of 8)	801.0	NM_033371	73062.0	Mm.322901	NM_033371	ENSMUSG00000033819	Ppp1r16a	2900084E10Rik|Mypt3|R75527	protein phosphatase 1, regulatory (inhibitor) subunit 16A	protein-coding	0.0	8.0	17.0	0.5	8.5	11.0
Merged-chr7-35099695-1	chr7	35099195	35100195	+	738.0	f0_balb.idr	Intergenic	Intergenic	-19598.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	8.5	20.5	11.5	15.5	47.5	14.0
Merged-chr7-45783679-2	chr7	45783248	45784248	+	738.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110987)	promoter-TSS (NR_110987)	-199.0	NM_001005511	381983.0	Mm.44928	NM_001005511	ENSMUSG00000062044	Lmtk3	BC059845|aatyk3	lemur tyrosine kinase 3	protein-coding	3.5	18.0	0.0	1.0	0.5	1.5
Merged-chr4-63746480-2	chr4	63745980	63746980	+	738.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(GGAA)n|Simple_repeat|Simple_repeat	-1367.0	NM_177371	326623.0	Mm.208152	NM_177371	ENSMUSG00000050395	Tnfsf15	Tl1|Tl1a|Tnlg1b|Vegi	tumor necrosis factor (ligand) superfamily, member 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-159116315-2	chr3	159115815	159116815	+	738.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040750, intron 2 of 4)	ORR1A2|LTR|ERVL-MaLR	39951.0	NR_040750	624759.0	Mm.491054	NR_040750	ENSMUSG00000106053	Gm20752	-	predicted gene, 20752	ncRNA	0.5	0.0	0.0	0.0	0.5	1.0
Merged-chr17-5658514-2	chr17	5658014	5659014	+	738.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 2 of 8)	intron (NM_146073, intron 2 of 8)	-140143.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8431167-2	chr4	8430686	8431686	+	738.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104458.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	10.0	3.0	4.0	1.0	8.5	17.5
Merged-chr15-25798779-2	chr15	25798279	25799279	+	738.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001353142, intron 10 of 20)	intron (NM_001353142, intron 10 of 20)	24766.0	NM_001353141	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119481688-1	chr11	119481188	119482188	+	738.0	f1_balb.idr	intron (NR_153849, intron 2 of 3)	intron (NR_153849, intron 2 of 3)	9547.0	NR_153849	78439.0	Mm.440446	NR_153849	ENSMUSG00000109408	A930037H05Rik	Gm44935	RIKEN cDNA A930037H05 gene	ncRNA	0.0	2.0	1.0	0.5	0.0	0.0
Merged-chr6-134918181-1	chr6	134917681	134918681	+	738.0	f1_c57bl6.idr	Intergenic	Intergenic	-2220.0	NM_009875	12576.0	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	1.5	3.0	0.0	6.0	5.5	4.0
Merged-chr13-40940256-1	chr13	40939756	40940756	+	738.0	f0_balb.idr	intron (NM_133219, intron 1 of 2)	intron (NM_133219, intron 1 of 2)	22622.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-17308523-2	chr3	17308023	17309023	+	738.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2A1|LINE|L1	-481398.0	NR_033490	70441.0	Mm.458192	NR_033490	ENSMUSG00000100252	Mir124-2hg	100040120|2610100L16Rik|6430547I21Rik|A930005K07Rik|AW125202|Gm2612	Mir124-2 host gene (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103984362-2	chr14	103983862	103984862	+	738.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045953, intron 1 of 2)	RMER10A|LTR|ERVL	42780.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124588402-1	chr5	124587902	124588902	+	738.0	f1_c57bl6.idr	intron (NM_181410, intron 4 of 12)	B3|SINE|B2	9254.0	NM_181410	209357.0	Mm.185467	NM_181410	ENSMUSG00000029387	Gtf2h3	34kDa|5033417D07Rik|BTF2|BTF2 p34|C730029A10|D5Ertd679e|TFIIH	general transcription factor IIH, polypeptide 3	protein-coding	0.0	0.0	1.5	0.0	0.0	1.0
Merged-chr1-55664849-1	chr1	55664349	55665349	+	738.0	f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	258903.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	24.5	16.5	11.5	2.5	18.0	9.5
Merged-chr14-118850674-2	chr14	118850174	118851174	+	738.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160097, intron 1 of 3)	intron (NM_001160097, intron 1 of 3)	-4276.0	NM_021386	58187.0	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-24874919-1	chr1	24874419	24875419	+	738.0	f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	196001.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0.0	2.5	1.0	0.0	0.0	0.0
Merged-chr13-13549974-1	chr13	13549474	13550474	+	738.0	f0_balb.idr	Intergenic	RLTR26B_MM|LTR|ERVK	-40435.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132306372-2	chr1	132305872	132306872	+	738.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_144810, exon 5 of 5)	3' UTR (NM_144810, exon 5 of 5)	7746.0	NM_144810	213417.0	Mm.39723	NM_144810	ENSMUSG00000042115	Klhdc8a	A630065K24Rik	kelch domain containing 8A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-61565058-1	chr12	61564558	61565558	+	738.0	f1_c57bl6.idr	intron (NM_001310586, intron 1 of 5)	intron (NM_001310586, intron 1 of 5)	41891.0	NM_001310586	238205.0	Mm.28802	NM_178714	ENSMUSG00000035653	Lrfn5	AI427653|AI604817|C130061B21|mKIAA4208	leucine rich repeat and fibronectin type III domain containing 5	protein-coding	6.5	2.0	0.0	6.0	2.0	0.0
Merged-chr13-58522545-2	chr13	58522025	58523025	+	738.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88352.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107832312-2	chr13	107831812	107832812	+	738.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	57752.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	8.5	14.0	14.0	9.0	10.5	16.0
Merged-chr4-141721187-2	chr4	141720620	141721620	+	738.0	f0_balb.idr|f1_balb.idr	intron (NM_001017966, intron 1 of 9)	intron (NM_001017966, intron 1 of 9)	2299.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	63.5	108.5	78.5	44.0	85.0	47.5
Merged-chr7-110120780-2	chr7	110120280	110121280	+	738.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-1279.0	NM_001355058	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-35752597-2	chr5	35752097	35753097	+	738.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-5283.0	NM_001177697	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-26248284-3	chr4	26247784	26248784	+	738.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	98368.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-33924783-2	chr4	33924283	33925283	+	738.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355021, exon 1 of 6)	5' UTR (NM_001355021, exon 1 of 6)	190.0	NM_001355021	12801.0	Mm.7992	NM_007726	ENSMUSG00000044288	Cnr1	CB-R|CB1|CB1R	cannabinoid receptor 1 (brain)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-116283117-4	chr12	116282623	116283623	+	738.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028731, intron 1 of 21)	intron (NM_028731, intron 1 of 21)	1901.0	NM_028731	52635.0	Mm.273755	NM_028731	ENSMUSG00000021171	Esyt2	2410017M09Rik|4921504I16Rik|CHR2SYT|D12Ertd551e|Fam62b	extended synaptotagmin-like protein 2	protein-coding	6.0	5.0	4.0	11.0	2.5	5.5
Merged-chr11-65720134-3	chr11	65719628	65720628	+	738.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316368, intron 3 of 10)	intron (NM_001316368, intron 3 of 10)	14704.0	NR_030417	791070.0		NR_030417	ENSMUSG00000076460	Mir744	Mirn744|mir-744|mmu-mir-744	microRNA 744	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-47118757-2	chr15	47118257	47119257	+	738.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	495452.0	NR_045811	75281.0	Mm.159487	NR_045811	ENSMUSG00000051198	4930548G14Rik	-	RIKEN cDNA 4930548G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-3544146-2	chr13	3543646	3544646	+	738.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008112, intron 1 of 10)	intron (NM_008112, intron 1 of 10)	6071.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	6.0	6.0	17.0	4.0	3.5	9.0
Merged-chr7-90144319-1	chr7	90143819	90144819	+	738.0	f1_balb.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	14106.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	56.5	57.0	35.0	33.0	31.0	25.0
Merged-chr17-36084088-2	chr17	36083588	36084588	+	738.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008199, intron 1 of 5)	CpG-6344	161.0	NM_008199	14963.0	Mm.477808	NM_008199	ENSMUSG00000073406	H2-Bl	H2-B1|H2-Bl-like	histocompatibility 2, blastocyst	protein-coding	0.0	0.0	2.5	0.0	0.0	0.0
Merged-chr19-16130879-4	chr19	16130395	16131395	+	738.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1936.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128123307-6	chr2	128122734	128123734	+	737.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028765, exon 18 of 18)	3' UTR (NM_028765, exon 18 of 18)	-2804.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	5.0	23.5	12.0	1.0	3.5	8.0
Merged-chr19-25137732-3	chr19	25137252	25138252	+	737.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 23 of 47)	intron (NM_028785, intron 23 of 47)	-99223.0	NM_181404	107351.0	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	66.5	130.0	93.0	49.0	76.5	51.0
Merged-chr1-71729137-3	chr1	71728626	71729626	+	737.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75791.0	NR_040308	100042814.0	Mm.405775	NR_040308	ENSMUSG00000073652	Apol7d	Gm15456	apolipoprotein L 7d	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154939128-4	chr4	154938573	154939573	+	737.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10996.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	3.5	8.5	8.5	20.0	41.0	19.0
Merged-chr6-83629717-2	chr6	83629217	83630217	+	737.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	26399.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	5.0	22.5	13.5	5.0	22.5	13.5
Merged-chr5-88572087-3	chr5	88571615	88572615	+	737.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289774, intron 1 of 17)	intron (NM_001289774, intron 1 of 17)	7075.0	NM_001289775	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56254725-3	chr19	56254277	56255277	+	737.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33135.0	NM_001329936	226243.0	Mm.25791	NM_146101	ENSMUSG00000025075	Habp2	AI035669|FSAP|HABP|HGFAL|PHBP	hyaluronic acid binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135411876-2	chr4	135411376	135412376	+	737.875	f1_balb.idr|f1_c57bl6.idr	TTS (NM_022980)	TTS (NM_022980)	4757.0	NR_030481	735285.0		NR_030481	ENSMUSG00000076123	Mir700	Mirn700|mir-700|mmu-mir-700	microRNA 700	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49616402-2	chr7	49615902	49616902	+	737.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20433.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55892637-4	chr16	55892150	55893150	+	737.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134457, intron 1 of 5)	intron (NM_001134457, intron 1 of 5)	2629.0	NM_001134457	385658.0	Mm.310635	NM_001134457	ENSMUSG00000075033	Nxpe3	Fam55c|Gm1752|Gm611	neurexophilin and PC-esterase domain family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148045465-2	chr2	148044965	148045965	+	737.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291067)	promoter-TSS (NM_001291067)	-1.0	NM_001291067	15376.0	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77649386-2	chr18	77648886	77649886	+	737.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178670, intron 3 of 4)	intron (NM_178670, intron 3 of 4)	64624.0	NM_178670	212163.0	Mm.23293	NM_178670	ENSMUSG00000047466	8030462N17Rik	Akd2|Ark2N	RIKEN cDNA 8030462N17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-80298547-2	chr2	80298047	80299047	+	737.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	6077.0	NM_177256	320769.0	Mm.60992	NM_177256	ENSMUSG00000050114	Prdx6b	1-cysPrx-P1|4930414C22Rik|Aop2-rs1|Prdx5-rs1|Prdx6-ps1|Prdx6-rs1|Prdx6-rs1-ps	peroxiredoxin 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118228609-2	chr11	118228109	118229109	+	737.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	RSINE1|SINE|B4	-15867.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27592577-3	chr7	27592135	27593135	+	737.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110208, intron 1 of 13)	intron (NM_001110208, intron 1 of 13)	1083.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	4.5	16.5	12.0	6.0	5.0	8.0
Merged-chr18-14669034-3	chr18	14668517	14669517	+	737.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009280, intron 3 of 10)	intron (NM_009280, intron 3 of 10)	13897.0	NM_001161369	268996.0	Mm.31761	NM_009280	ENSMUSG00000037013	Ss18	D130059H17|Ssxt|Syt	SS18, nBAF chromatin remodeling complex subunit	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr2-102850025-3	chr2	102849537	102850537	+	737.81665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009851, intron 5 of 18)	intron (NM_009851, intron 5 of 18)	51628.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.0	0.0	7.0	0.5	0.5	1.0
Merged-chr17-51288942-4	chr17	51288508	51289508	+	737.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037268, intron 3 of 4)	RLTR53_Mm|LTR|ERVK	11020.0	NR_037253	100526485.0		NR_037253	ENSMUSG00000105330	Mir669a-6	mmu-mir-669a-6	microRNA 669a-6	ncRNA	2.0	3.5	4.5	0.0	19.0	2.0
Merged-chr2-132217267-4	chr2	132216766	132217766	+	737.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30522.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104221766-2	chr3	104221266	104222266	+	737.8000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1360.0	NM_001159354	99470.0	Mm.264849	NM_133853	ENSMUSG00000052539	Magi3	4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding	0.0	0.0	1.5	0.0	0.0	1.5
Merged-chr16-43253248-2	chr16	43252748	43253748	+	737.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 1 of 6)	intron (NM_181058, intron 1 of 6)	5964.0	NM_019778	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-172378428-5	chr2	172377892	172378892	+	737.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024199, intron 5 of 5)	intron (NM_024199, intron 5 of 5)	7389.0	NM_024199	67337.0	Mm.26944	NM_024199	ENSMUSG00000027498	Cstf1	1700057K18Rik|AI788832	cleavage stimulation factor, 3' pre-RNA, subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3926304-3	chr12	3925805	3926805	+	737.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28640.0	NM_001278581	18976.0	Mm.277996	NM_008895	ENSMUSG00000020660	Pomc	ACTH|BE|Beta-LPH|Clip|Gamma-LPH|Npp|Pomc-1|Pomc1|alpha-MSH|alphaMSH|beta-MSH|gamma-MSH	pro-opiomelanocortin-alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-85367104-3	chr10	85366606	85367606	+	737.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-19708.0	NM_028709	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	2.0	0.5	1.0	1.5	2.5	0.0
Merged-chr8-25974445-3	chr8	25973940	25974940	+	737.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029884, intron 1 of 17)	(CA)n|Simple_repeat|Simple_repeat	2304.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	87.5	259.0	172.5	40.0	89.5	53.0
Merged-chr11-61411104-2	chr11	61410604	61411604	+	737.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33029.0	NM_026183	67473.0	Mm.100741	NM_026183	ENSMUSG00000010122	Slc47a1	1300013J15Rik|AI036982|MATE1|mMATE1	solute carrier family 47, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77621128-2	chr18	77620628	77621628	+	737.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-55992.0	NM_001164504	225743.0	Mm.23293	NM_001164504	ENSMUSG00000025427	Rnf165	2900024M11Rik|AI427432|Akd2|Ark2c|G630064H08Rik|Gm96	ring finger protein 165	protein-coding	1.5	7.0	1.0	5.0	0.5	1.0
Merged-chr19-7215652-2	chr19	7215152	7216152	+	737.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_007750, intron 1 of 1)	intron (NM_007750, intron 1 of 1)	1964.0	NM_007750	12868.0	Mm.14022	NM_007750	ENSMUSG00000035885	Cox8a	COX8L	cytochrome c oxidase subunit VIIIa	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25532271-2	chr14	25531771	25532771	+	737.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 2 of 23)	intron (NM_183208, intron 2 of 23)	-2168.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33895895-5	chr16	33895359	33896359	+	737.713318	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 5 of 14)	intron (NM_001145884, intron 5 of 14)	66194.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10974602-2	chr16	10974102	10975102	+	737.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	B4A|SINE|B4	18519.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-11209816-1	chr12	11209316	11210316	+	737.666687	f0_balb.idr	promoter-TSS (NM_019544)	promoter-TSS (NM_019544)	-868.0	NM_019544	56184.0	Mm.117113	NM_019544	ENSMUSG00000047002	Msgn1	Msgn|pMsgn1	mesogenin 1	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr10-121316020-3	chr10	121315512	121316512	+	737.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361015, intron 2 of 12)	intron (NM_001361015, intron 2 of 12)	-4616.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	0.5	4.0	4.0	2.0	6.0	2.0
Merged-chr10-52331100-3	chr10	52330624	52331624	+	737.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51000.0	NM_053187	94221.0	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16781711-3	chr19	16781203	16782203	+	737.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173028)	promoter-TSS (NM_173028)	-770.0	NM_173028	271564.0	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53479619-3	chr11	53479243	53480243	+	737.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183173, exon 1 of 1)	exon (NM_183173, exon 1 of 1)	452.0	NM_183173	237761.0	Mm.145208	NM_183173	ENSMUSG00000044352	Sowaha	A830006N08Rik|Ankrd43	sosondowah ankyrin repeat domain family member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-13684252-3	chr6	13683733	13684733	+	737.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-6267.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67463885-3	chr5	67463381	67464381	+	737.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015582)	promoter-TSS (NR_015582)	-17.0	NR_110363	320479.0	Mm.387187	NR_015582	ENSMUSG00000107385	C330024D21Rik	-	RIKEN cDNA C330024D21 gene	ncRNA	3.0	0.0	1.0	5.0	13.0	3.5
Merged-chr5-117485582-3	chr5	117485079	117486079	+	737.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	71577.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	12.5	35.5	36.0	21.5	19.0	43.5
Merged-chr6-122652722-2	chr6	122652222	122653222	+	737.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	26298.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	14.0	14.0	5.5	17.0	14.0	5.5
Merged-chr11-114973041-2	chr11	114972535	114973535	+	737.625	f0_balb.idr|f1_balb.idr	Intergenic	RLTR44C|LTR|ERVK	-12618.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	0.5	2.0	11.0	7.5	48.0	36.0
Merged-chr11-5945325-4	chr11	5944807	5945807	+	737.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010292, intron 1 of 9)	intron (NM_010292, intron 1 of 9)	4774.0	NM_010292	103988.0	Mm.220358	NM_010292	ENSMUSG00000041798	Gck	GLK|Gk|Gls006|HK4|HKIV|HXKP|Hlb62|MODY2	glucokinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97293298-3	chr6	97292734	97293734	+	737.616638	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 22 of 23)	intron (NM_145148, intron 22 of 23)	-40454.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	2.0	16.0	9.5	2.5	19.0	10.0
Merged-chr6-125312697-2	chr6	125312197	125313197	+	737.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_010736, intron 4 of 9)	intron (NM_010736, intron 4 of 9)	1188.0	NM_010736	17000.0	Mm.3122	NM_010736	ENSMUSG00000030339	Ltbr	AI256028|LTbetaR|Ltar|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFRrp|Tnfbr|Tnfrsf3	lymphotoxin B receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62232817-4	chr18	62232313	62233313	+	737.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52713.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	15.5	49.0	54.5	24.0	17.0	25.5
Merged-chr14-55577994-2	chr14	55577498	55578498	+	737.583374	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_011189)	promoter-TSS (NM_011189)	-496.0	NM_011189	19186.0	Mm.830	NM_011189	ENSMUSG00000022216	Psme1	AW413925|PA28a	proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-19162114-3	chr8	19161629	19162629	+	737.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4242.0	NM_153115	78128.0	Mm.229357	NM_153115	ENSMUSG00000079842	Spag11a	9230111C08Rik|Bin1b|EP2Q|EP2e|Spag11	sperm associated antigen 11A	protein-coding	48.5	56.5	57.5	32.5	61.5	37.0
Merged-chr4-134923032-2	chr4	134922526	134923526	+	737.549988	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_023665)	promoter-TSS (NM_023665)	-599.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19880601-2	chr10	19880101	19881101	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161825, intron 7 of 8)	intron (NM_001161825, intron 7 of 8)	27073.0	NM_008822	18634.0	Mm.338363	NM_008822	ENSMUSG00000020003	Pex7	MmPEX7	peroxisomal biogenesis factor 7	protein-coding	0.0	4.5	0.0	0.0	1.0	2.0
Merged-chr4-128616624-2	chr4	128616131	128617131	+	737.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_205823, exon 1 of 1)	exon (NM_205823, exon 1 of 1)	1988.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	29.0	32.5	52.0	18.5	40.0	20.0
Merged-chr13-107124487-2	chr13	107123987	107124987	+	737.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	101917.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76531201-2	chr11	76530701	76531701	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198894, intron 1 of 22)	intron (NM_198894, intron 1 of 22)	-21782.0	NM_198018	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98740260-2	chr11	98739760	98740760	+	737.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1525.0	NM_178060	21833.0	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98837651-2	chr15	98837151	98838151	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033276, intron 49 of 54)	intron (NM_001033276, intron 49 of 54)	-6143.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-111139782-2	chr5	111139199	111140199	+	737.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	135555.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	9.5	7.0	4.5	15.5	18.0	7.0
Merged-chr15-59662812-3	chr15	59662340	59663340	+	737.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14186.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96093612-2	chr11	96093112	96094112	+	737.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TGGA)n|Simple_repeat|Simple_repeat	-17918.0	NM_007506	11951.0	Mm.258	NM_007506	ENSMUSG00000006057	Atp5g1	-	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-58911772-2	chr19	58911272	58912272	+	737.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037247)	promoter-TSS (NR_037247)	-13.0	NR_037247	100526480.0		NR_037247	ENSMUSG00000092813	Mir3086	mir-3086|mmu-mir-3086	microRNA 3086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3591210-2	chr19	3590759	3591759	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008513, intron 20 of 22)	intron (NM_008513, intron 20 of 22)	-15510.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	2.0	0.0	2.5	0.0	11.5	1.0
Merged-chr4-72360760-2	chr4	72360260	72361260	+	737.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_T|LINE|L1	159516.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88473682-2	chr3	88473182	88474182	+	737.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12500.0	NM_001163489	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-44971054-2	chr4	44970554	44971554	+	737.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10340.0	NM_080289	76238.0	Mm.196574	NM_080289	ENSMUSG00000035637	Grhpr	1110059D05Rik|6430629L09Rik|Glxr	glyoxylate reductase/hydroxypyruvate reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69978313-2	chr3	69977813	69978813	+	737.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-29300.0	NM_001018031	229389.0	Mm.331071	NM_001018031	ENSMUSG00000027788	Otol1	Gm414	otolin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-36118406-2	chr13	36117906	36118906	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 1 of 5)	intron (NM_001039189, intron 1 of 5)	763.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	0.0	1.5	0.5	0.0	0.0	0.0
Merged-chr2-138274785-3	chr2	138274297	138275297	+	737.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025431, intron 1 of 4)	URR1B|DNA|hAT-Charlie	-3696.0	NM_145534	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-13398396-2	chr15	13397896	13398896	+	737.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-224721.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99556009-2	chr7	99555509	99556509	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178220, intron 1 of 14)	intron (NM_178220, intron 1 of 14)	3740.0	NR_029760	723840.0		NR_029760	ENSMUSG00000065571	Mir326	Mirn326|mir-326|mmu-mir-326	microRNA 326	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134428005-2	chr6	134427506	134428506	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355686, intron 3 of 5)	ORR1E|LTR|ERVL-MaLR	13578.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	7.0	14.0	3.0	10.5	2.5	13.5
Merged-chr1-14590952-2	chr1	14590452	14591452	+	737.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	165014.0	NM_001360810	17681.0	Mm.5820	NM_010827	ENSMUSG00000025930	Msc	MyoR|bHLHa22	musculin	protein-coding	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr19-4056039-2	chr19	4055539	4056539	+	737.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3408.0	NM_144869	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106503509-2	chr11	106503009	106504009	+	737.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_198292, exon 12 of 12)	3' UTR (NM_198292, exon 12 of 12)	2518.0	NR_030703	100216537.0		NR_030703	ENSMUSG00000065126	Snord104	-	small nucleolar RNA, C/D box 104	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70080377-2	chr14	70079877	70080877	+	737.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001289925, exon 3 of 3)	3' UTR (NM_001289925, exon 3 of 3)	2582.0	NM_001289927	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-176799077-2	chr1	176798577	176799577	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001099637, intron 1 of 19)	intron (NM_001099637, intron 1 of 19)	8047.0	NM_001099637	545389.0	Mm.269991	NM_001024722	ENSMUSG00000057335	Cep170	4933426L22Rik|A330004A13Rik|AI195353	centrosomal protein 170	protein-coding	8.5	6.5	5.0	8.5	4.0	6.0
Merged-chr10-44431691-2	chr10	44431191	44432191	+	737.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27057.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-63368253-2	chr10	63367753	63368753	+	737.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14190.0	NM_001253685	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100894787-3	chr7	100894290	100895290	+	737.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081116, intron 1 of 20)	CpG	-12381.0	NR_037289	100526508.0		NR_037289	ENSMUSG00000093296	Mir3102	mmu-mir-3102	microRNA 3102	ncRNA	0.0	4.0	1.0	7.0	0.0	0.0
Merged-chr12-108759337-2	chr12	108758837	108759837	+	737.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-33974.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-177487974-3	chr1	177487477	177488477	+	737.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42156.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-106873098-2	chr3	106872598	106873598	+	737.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-50541.0	NM_146489	258482.0	Mm.377527	NM_146489	ENSMUSG00000043529	Olfr266	MOR122-2	olfactory receptor 266	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8635843-2	chr11	8635343	8636343	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	28692.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5650909-2	chr19	5650409	5651409	+	737.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164482)	TTS (NM_001164482)	12798.0	NM_001164482	20469.0	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	15.0	16.5	6.5	0.5	12.0	5.5
Merged-chr18-36192812-2	chr18	36192312	36193312	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167891, intron 1 of 9)	intron (NM_001167891, intron 1 of 9)	4348.0	NM_001167891	100042150.0	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81016892-2	chr15	81016392	81017392	+	737.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_153049, exon 10 of 13)	exon (NM_153049, exon 10 of 13)	39127.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38198844-3	chr15	38198364	38199364	+	737.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20339.0	NM_008757	18285.0	Mm.252830	NM_008757	ENSMUSG00000061923	Odf1	-	outer dense fiber of sperm tails 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62175255-2	chr18	62174753	62175753	+	737.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4728.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-65369557-2	chr14	65369057	65370057	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199029, intron 1 of 9)	intron (NM_199029, intron 1 of 9)	10881.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	0.5	0.5	1.0	0.5	0.5	1.0
Merged-chr18-64623238-2	chr18	64622738	64623738	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001488, intron 1 of 27)	intron (NM_001001488, intron 1 of 27)	37762.0	NM_001001488	54670.0	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	0.0	0.0	1.5	3.5	1.0	2.0
Merged-chr1-59477632-2	chr1	59477132	59478132	+	737.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4515.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-116629693-2	chr8	116629193	116630193	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 1 of 6)	intron (NM_029441, intron 1 of 6)	103298.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126918482-2	chr8	126917982	126918982	+	737.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	27439.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4163541-2	chr12	4163041	4164041	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 2 of 21)	intron (NM_001159537, intron 2 of 21)	29388.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-93117806-3	chr5	93117309	93118309	+	737.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009818, intron 1 of 9)	intron (NM_001009818, intron 1 of 9)	24393.0	NM_001347377	52398.0	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	10.0	1.0	3.5	10.0	1.0	3.0
Merged-chr2-166651936-3	chr2	166651428	166652428	+	737.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	61904.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80950580-2	chr10	80950080	80951080	+	737.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010319, exon 4 of 4)	3' UTR (NM_010319, exon 4 of 4)	20489.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-189799714-2	chr1	189799214	189800214	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008976, intron 3 of 18)	B4|SINE|B4	71446.0	NM_008976	19250.0	Mm.4498	NM_008976	ENSMUSG00000026604	Ptpn14	C130080N23Rik|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding	6.0	4.5	24.5	1.0	6.5	9.5
Merged-chr5-140265362-2	chr5	140264862	140265862	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152617, intron 9 of 16)	intron (NR_152617, intron 9 of 16)	56190.0	NM_001359025	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139433027-2	chr5	139432527	139433527	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	9848.0	NM_029771	76854.0	Mm.389706	NM_029771	ENSMUSG00000053647	Gper1	6330420K13Rik|CMKRL2|Ceprl|FEG-1|GPCR-Br|Gper|Gpr30	G protein-coupled estrogen receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24884374-2	chr16	24883874	24884874	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 9 of 12)	intron (NM_178665, intron 9 of 12)	162519.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108817904-2	chr8	108817362	108818362	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 3 of 9)	Lx7|LINE|L1	103218.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.0	0.0	4.5	1.0	5.0	2.0
Merged-chr5-105749297-3	chr5	105748815	105749815	+	737.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122768, intron 2 of 2)	intron (NM_001122768, intron 2 of 2)	48505.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	2.0	1.0	9.5	4.0	0.0	4.5
Merged-chr11-20585825-3	chr11	20585327	20586327	+	737.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021372, intron 1 of 1)	intron (NM_021372, intron 1 of 1)	42574.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	5.0	10.0	5.5	7.0	9.0	3.0
Merged-chr5-65958852-2	chr5	65958352	65959352	+	737.416687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8272.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97371552-2	chr6	97371052	97372052	+	737.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	intron (NM_145148, intron 6 of 23)	87734.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116140662-4	chr9	116140278	116141278	+	737.408325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	34585.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	2.0	8.5	1.5	6.5	11.5	11.5
Merged-chr8-104146505-3	chr8	104145991	104146991	+	737.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24022.0	NM_001141924	65115.0	Mm.41849	NM_001141922	ENSMUSG00000031872	Bean1	Bean	brain expressed, associated with Nedd4, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33746664-2	chr2	33746164	33747164	+	737.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 9 of 9)	intron (NM_175184, intron 9 of 9)	-59152.0	NR_045729	320482.0	Mm.442057	NR_045729	ENSMUSG00000086484	Nron	A630071L07Rik|Gm24353	non-protein coding RNA, repressor of NFAT	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104001047-2	chr9	104000547	104001547	+	737.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A|LTR|ERVL	-1497.0	NM_028721	74025.0	Mm.479273	NM_028721	ENSMUSG00000032558	Nphp3	3632410F03Rik|AI550417|C230078J01|D330020E01Rik|pcy	nephronophthisis 3 (adolescent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31731088-3	chr2	31730589	31731589	+	737.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283047, intron 2 of 11)	intron (NM_001283047, intron 2 of 11)	-28850.0	NM_009594	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165845432-3	chr1	165844975	165845975	+	737.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113391, intron 1 of 7)	intron (NM_001113391, intron 1 of 7)	56794.0	NM_001113392	12503.0	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63413081-4	chr14	63412589	63413589	+	737.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007549, intron 1 of 12)	intron (NM_007549, intron 1 of 12)	4098.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54927038-3	chr6	54926530	54927530	+	737.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171007, intron 11 of 11)	MTB_Mm|LTR|ERVL-MaLR	44631.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90532513-2	chr2	90532013	90533013	+	737.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	48134.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	17.0	34.5	36.0	15.0	39.0	14.5
Merged-chr10-128604109-2	chr10	128603609	128604609	+	737.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14608.0	NM_010153	13867.0	Mm.373043	NM_010153	ENSMUSG00000018166	Erbb3	C76256|Erbb-3|Erbb3r|Her3	erb-b2 receptor tyrosine kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63131525-2	chr9	63131025	63132025	+	737.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15455.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-19317265-2	chr2	19316765	19317765	+	737.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A-int|LTR|ERVK	-27052.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100425157-2	chr5	100424744	100425744	+	737.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_034038, intron 3 of 4)	MTA_Mm|LTR|ERVL-MaLR	4291.0	NR_034038	100503199.0	Mm.392282	NR_034038	ENSMUSG00000097772	5430416N02Rik	100041797|Adapt33|Gm3514	RIKEN cDNA 5430416N02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-52062087-4	chr16	52061598	52062598	+	737.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	30549.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141606776-2	chr4	141606252	141607252	+	737.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133754)	promoter-TSS (NM_133754)	-700.0	NM_133754	74202.0	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	121.5	288.0	232.5	17.5	35.5	10.5
Merged-chr6-5233864-3	chr6	5233354	5234354	+	737.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173006, intron 5 of 8)	intron (NM_173006, intron 5 of 8)	22379.0	NM_173006	269823.0	Mm.9122	NM_173006	ENSMUSG00000029759	Pon3	2810004E20|AI786302	paraoxonase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-62864409-3	chr14	62863935	62864935	+	737.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	-1107.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	40.0	83.5	65.0	65.5	78.0	56.5
Merged-chr2-72962342-3	chr2	72961830	72962830	+	737.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001018042, intron 4 of 6)	intron (NM_001018042, intron 4 of 6)	16951.0	NM_001098425	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-28866341-4	chr6	28865848	28866848	+	737.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 16 of 23)	intron (NM_019776, intron 16 of 23)	-34601.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-11701004-4	chr18	11700506	11701506	+	737.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081223, intron 6 of 18)	intron (NM_001081223, intron 6 of 18)	43657.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	3.0	6.0	1.0	4.0	0.0	3.0
Merged-chr1-87853980-5	chr1	87853490	87854490	+	737.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_136921, exon 1 of 2)	non-coding (NR_136921, exon 1 of 2)	309.0	NR_136921	100503175.0	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-105396348-3	chr7	105395838	105396838	+	737.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242363, intron 1 of 12)	L2c|LINE|L2	3716.0	NM_001242364	74349.0	Mm.30254	NM_199009	ENSMUSG00000044465	Fam160a2	4632419K20Rik|6530415H11Rik|FHIP	family with sequence similarity 160, member A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83965341-3	chr6	83964827	83965827	+	737.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355286, intron 16 of 26)	intron (NM_001355286, intron 16 of 26)	-43271.0	NM_001077694	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34176220-2	chr6	34175720	34176720	+	737.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_021435, intron 1 of 9)	intron (NM_021435, intron 1 of 9)	834.0	NM_021435	58246.0	Mm.245527	NM_021435	ENSMUSG00000018999	Slc35b4	4930474D06Rik|AB041549|AW494345	solute carrier family 35, member B4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84494296-3	chr2	84493805	84494805	+	737.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	12568.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124472897-2	chr6	124472397	124473397	+	737.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8113.0	NM_153508	232370.0	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127992043-4	chr7	127991536	127992536	+	737.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023258, exon 3 of 3)	3' UTR (NM_023258, exon 3 of 3)	1831.0	NM_023258	66824.0	Mm.24163	NM_023258	ENSMUSG00000030793	Pycard	9130417A21Rik|Asc|CARD5|TMS-1|TNS1|masc	PYD and CARD domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172412449-4	chr1	172411917	172412917	+	737.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35886.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	9.5	0.0	3.0	0.0	0.0	7.0
Merged-chr16-33693677-3	chr16	33693150	33694150	+	737.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 1 of 14)	MTD|LTR|ERVL-MaLR	9184.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144338307-3	chr2	144337809	144338809	+	737.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-6229.0	NM_026924	107586.0	Mm.252750	NM_026924	ENSMUSG00000037279	Ovol2	1700108N11Rik|1810007D21Rik|M-OVO|M-OVO-A|M-OVO-B|MOVO|Ovo2|Zfp339|movo2	ovo like zinc finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-150496053-2	chr5	150495553	150496553	+	737.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_172887, intron 60 of 60)	B3|SINE|B2	6166.0	NR_024513	194292.0	Mm.300184	NR_024513		Gm5	Gm1812	predicted gene 5	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91479246-2	chr16	91478746	91479746	+	737.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5969.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	14.5	14.0	7.0	14.5	14.0	8.0
Merged-chr7-126135614-4	chr7	126135113	126136113	+	737.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 9 of 23)	intron (NM_028816, intron 9 of 23)	-53202.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38451860-5	chr16	38451258	38452258	+	737.08667	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007414, intron 1 of 3)	intron (NM_007414, intron 1 of 3)	931.0	NM_007414	11544.0	Mm.20047	NM_007414	ENSMUSG00000002844	Adprh	Arh1	ADP-ribosylarginine hydrolase	protein-coding	4.0	19.0	13.0	3.0	7.0	18.5
Merged-chr1-88249152-2	chr1	88248652	88249652	+	737.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 27 of 41)	intron (NM_001281466, intron 27 of 41)	20256.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50144862-3	chr6	50144360	50145360	+	737.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361248, intron 2 of 13)	ORR1F|LTR|ERVL-MaLR	34000.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-49008171-4	chr6	49007662	49008662	+	737.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8546.0	NR_126454	75347.0	Mm.207324	NR_126454	ENSMUSG00000107656	4930563H07Rik	-	RIKEN cDNA 4930563H07 gene	ncRNA	6.0	1.5	1.5	6.0	0.0	1.5
Merged-chr9-73103522-5	chr9	73102982	73103982	+	737.039978	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001311106, exon 3 of 4)	exon (NM_001311106, exon 3 of 4)	1084.0	NM_001311106	66991.0	Mm.471745	NM_025890	ENSMUSG00000092622	Khdc3	2410004A20Rik|AI467128|FILIA|OEEP48	KH domain containing 3, subcortical maternal complex member	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44333178-1	chr9	44332678	44333678	+	737.0	f1_balb.idr	3' UTR (NM_007875, exon 9 of 9)	3' UTR (NM_007875, exon 9 of 9)	-1537.0	NM_010436	15270.0	Mm.245931	NM_010436	ENSMUSG00000049932	H2afx	AW228881|H2A.X|H2ax|Hist5-2ax|gammaH2ax	H2A histone family, member X	protein-coding	0.0	0.0	0.5	1.0	0.0	0.0
Merged-chr14-9395776-3	chr14	9395271	9396271	+	737.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-488324.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26932692-1	chr2	26932192	26933192	+	737.0	f0_balb.idr	intron (NM_011512, intron 1 of 5)	intron (NM_011512, intron 1 of 5)	819.0	NM_011512	20932.0	Mm.300594	NM_011512	ENSMUSG00000014867	Surf4	AL033340|AL033373|Surf-4	surfeit gene 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121329100-1	chr14	121328600	121329600	+	737.0	f1_balb.idr	intron (NM_145465, intron 2 of 10)	intron (NM_145465, intron 2 of 10)	50130.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	5.0	0.0	1.5	0.0	0.0	3.0
Merged-chr16-39193461-1	chr16	39192961	39193961	+	737.0	f0_balb.idr	Intergenic	Intergenic	-4511.0	NR_153800	102640746.0		NR_153800		Gm36742	-	predicted gene, 36742	ncRNA	14.0	9.0	10.0	18.5	6.5	8.0
Merged-chr18-38193458-1	chr18	38192958	38193958	+	737.0	f1_balb.idr	Intergenic	Intergenic	16304.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0.0	0.5	0.0	0.0	3.0	0.0
Merged-chr3-107775888-1	chr3	107775388	107776388	+	737.0	f0_c57.idr	Intergenic	Intergenic	-15419.0	NM_001113529	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111666160-1	chr13	111665660	111666660	+	737.0	f1_c57bl6.idr	Intergenic	RLTR11B|LTR|ERVK	-20018.0	NM_172593	218613.0	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	10.5	15.5	1.5	4.0	4.0	4.5
Merged-chr9-4805645-2	chr9	4805145	4806145	+	737.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-9411.0	NM_019691	14802.0	Mm.209263	NM_019691	ENSMUSG00000025892	Gria4	GluA4|GluR-D|Glur-4|Glur4|Gluralpha4|spkw1	glutamate receptor, ionotropic, AMPA4 (alpha 4)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-55502596-1	chr15	55502096	55503096	+	737.0	f0_balb.idr	intron (NM_181277, intron 45 of 47)	intron (NM_181277, intron 45 of 47)	54716.0	NM_026759	68537.0	Mm.236795	NM_026759	ENSMUSG00000022370	Mrpl13	1110002D09Rik	mitochondrial ribosomal protein L13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-3010337-2	chr17	3009830	3010830	+	737.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	73853.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40695496-2	chr19	40694996	40695996	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	35726.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	16.0	14.0	11.5	6.0	18.0	12.0
Merged-chr2-60046759-1	chr2	60046259	60047259	+	737.0	f0_balb.idr	intron (NM_001001182, intron 2 of 35)	L1MD2|LINE|L1	78981.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6071469-2	chr19	6070969	6071969	+	737.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081041, exon 4 of 10)	exon (NM_001081041, exon 4 of 10)	-3619.0	NM_028454	73166.0	Mm.489613	NM_028454	ENSMUSG00000024799	Tm7sf2	3110041O18Rik|ANG1|C14SR|Dhcr14	transmembrane 7 superfamily member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-43173364-3	chr10	43172906	43173906	+	737.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175407, intron 1 of 6)	CpG	1124.0	NM_175407	109205.0	Mm.153750	NM_175407	ENSMUSG00000038248	Sobp	2900009C16Rik|5330439J01Rik|JXC1|jc	sine oculis binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65606883-2	chr17	65606383	65607383	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355402, intron 1 of 6)	intron (NM_001355402, intron 1 of 6)	6672.0	NM_001355402	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4600827-2	chr2	4600327	4601327	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 7 of 11)	intron (NM_001177844, intron 7 of 11)	41073.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39483800-2	chr18	39483300	39484300	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	3445.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	1.0	5.5	1.0	0.0	7.5	9.0
Merged-chr4-133692354-2	chr4	133691867	133692867	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080819, intron 10 of 19)	intron (NM_001080819, intron 10 of 19)	-19201.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	2.5	5.0	4.0	4.0	1.5	2.5
Merged-chr14-76876251-2	chr14	76875751	76876751	+	737.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116120.0	NR_153763	73883.0	Mm.489041	NR_153763		4930431P22Rik	-	RIKEN cDNA 4930431P22 gene	ncRNA	3.0	1.0	1.0	1.5	6.0	0.0
Merged-chr13-23422620-2	chr13	23422120	23423120	+	737.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013924, exon 2 of 3)	exon (NM_013924, exon 2 of 3)	1246.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	0.0	2.5	7.5	0.0	2.5	5.5
Merged-chr5-115051021-2	chr5	115050532	115051532	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029012, intron 1 of 10)	intron (NM_029012, intron 1 of 10)	39508.0	NM_029012	74585.0	Mm.355894	NM_029012	ENSMUSG00000029550	Sppl3	4833416I09Rik|Psl4|Usmg3	signal peptide peptidase 3	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr4-124646792-3	chr4	124646303	124647303	+	737.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10843.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	0.0	0.0	0.0	2.5	0.0	0.0
Merged-chr11-115323827-2	chr11	115323327	115324327	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362400, intron 3 of 7)	intron (NM_001362400, intron 3 of 7)	1297.0	NM_001362400	237987.0	Mm.44542	NM_172801	ENSMUSG00000050201	Otop2	4732464P15	otopetrin 2	protein-coding	0.0	3.0	0.0	0.0	4.0	0.0
Merged-chr4-119112040-2	chr4	119111540	119112540	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011400, intron 1 of 9)	intron (NM_011400, intron 1 of 9)	3295.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	0.0	2.5	0.0	0.0	7.5	0.0
Merged-chr5-34781934-3	chr5	34781453	34782453	+	737.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010414, intron 1 of 66)	intron (NM_010414, intron 1 of 66)	20213.0	NM_010414	15194.0	Mm.209071	NM_010414	ENSMUSG00000029104	Htt	AI256365|C430023I11Rik|Hd|Hdh|IT15	huntingtin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66513944-2	chr9	66513444	66514444	+	737.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001302116)	TTS (NM_001302116)	649.0	NM_175206	74165.0	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105975556-2	chr1	105975056	105976056	+	737.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14726.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	0.0	5.5	3.0	0.5	5.5	3.0
Merged-chr17-48469191-1	chr17	48468691	48469691	+	737.0	f1_balb.idr	TTS (NM_152823)	TTS (NM_152823)	14290.0	NM_152823	76589.0	Mm.311629	NM_152823	ENSMUSG00000043592	Unc5cl	2510009H09Rik|BB155270|Zud	unc-5 family C-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-116290726-2	chr10	116290226	116291226	+	737.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10648.0	NM_029928	19263.0	Mm.37213	NM_029928	ENSMUSG00000020154	Ptprb	3230402H02Rik|C130094E24|Ptpz|Rptpb|VE-PTP|Veptp	protein tyrosine phosphatase, receptor type, B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-116951001-2	chr13	116950501	116951501	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	74515.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	8.5	21.0	26.0	9.5	13.5	15.5
Merged-chr12-3905796-2	chr12	3905296	3906296	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 16 of 17)	intron (NM_153743, intron 16 of 17)	14052.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45487351-1	chr9	45486851	45487851	+	737.0	f1_c57bl6.idr	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-56119.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	44.5	126.0	103.5	8.0	7.5	20.0
Merged-chr12-69295794-2	chr12	69295294	69296294	+	737.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027117)	promoter-TSS (NM_027117)	-887.0	NM_027117	69554.0	Mm.234368	NM_027117	ENSMUSG00000020978	Klhdc2	2310022K15Rik|D12Ertd522e|HCLP-1|LCP	kelch domain containing 2	protein-coding	13.0	16.5	10.5	9.0	4.0	7.0
Merged-chr7-28823640-2	chr7	28823140	28824140	+	737.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-1698.0	NM_016772	51798.0	Mm.291776	NM_016772	ENSMUSG00000053898	Ech1	AA617331	enoyl coenzyme A hydratase 1, peroxisomal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-62715174-2	chr1	62714674	62715674	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 1 of 16)	B3|SINE|B2	11857.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75986526-2	chr2	75986026	75987026	+	737.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4559.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102451824-2	chr14	102451324	102452324	+	737.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	530808.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105563554-2	chr8	105563054	105564054	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013477, intron 1 of 7)	MIRb|SINE|MIR	2510.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56615936-2	chr17	56615436	56616436	+	737.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028782, exon 13 of 18)	exon (NM_028782, exon 13 of 18)	2541.0	NM_018730	54217.0	Mm.11376	NM_018730	ENSMUSG00000057863	Rpl36	-	ribosomal protein L36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-79483430-2	chr14	79482930	79483930	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 1 of 8)	B3|SINE|B2	-2162.0	NM_018765	22380.0	Mm.476813	NM_018765	ENSMUSG00000022023	Wbp4	AW545037|BB101031|FBP21	WW domain binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79434789-2	chr15	79434289	79435289	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359863, intron 2 of 10)	intron (NM_001359863, intron 2 of 10)	7029.0	NM_001289899	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-37003402-3	chr6	37002906	37003906	+	737.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 19 of 32)	intron (NM_001347104, intron 19 of 32)	-193227.0	NM_008973	19242.0	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52191247-2	chr13	52190747	52191747	+	737.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94506.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107727165-2	chr13	107726665	107727665	+	737.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145456, exon 15 of 15)	exon (NM_145456, exon 15 of 15)	39768.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117843234-2	chr2	117842734	117843734	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040631, intron 2 of 5)	intron (NR_040631, intron 2 of 5)	21306.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	2.0	0.0	0.5	5.5	7.0	4.5
Merged-chr11-70495151-2	chr11	70494651	70495651	+	737.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-10123.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-12220749-2	chr12	12220249	12221249	+	737.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CATG)n|Simple_repeat|Simple_repeat	-41390.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0.0	1.0	4.0	3.5	13.0	3.0
Merged-chr14-25609077-1	chr14	25608577	25609577	+	737.0	f1_balb.idr	intron (NM_183208, intron 6 of 23)	intron (NM_183208, intron 6 of 23)	5564.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	5.0	4.0	1.0	9.0	3.5	6.5
Merged-chr10-111096004-1	chr10	111095504	111096504	+	737.0	f0_balb.idr	Intergenic	Intergenic	-68798.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-157554510-5	chr1	157554028	157555028	+	737.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159986, intron 14 of 25)	intron (NM_001159986, intron 14 of 25)	28358.0	NM_001159986	89867.0	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding	0.0	1.5	2.5	9.5	15.0	3.5
Merged-chr2-66634795-2	chr2	66634295	66635295	+	737.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001290675, exon 1 of 27)	5' UTR (NM_001290675, exon 1 of 27)	167.0	NM_001290674	20274.0	Mm.440889	NM_018852	ENSMUSG00000075316	Scn9a	Nav1.7|PN1|mKIAA4197	sodium channel, voltage-gated, type IX, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55509270-1	chr4	55508770	55509770	+	737.0	f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	23205.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	13.0	8.5	4.0	33.0	51.0	38.0
Merged-chr14-54527740-2	chr14	54527240	54528240	+	737.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10270.0	NM_001313907	27374.0	Mm.196585	NM_013768	ENSMUSG00000023110	Prmt5	Jbp1|Skb1	protein arginine N-methyltransferase 5	protein-coding	0.5	1.0	1.0	0.5	3.0	0.5
Merged-chr2-131078006-1	chr2	131077506	131078506	+	737.0	f1_c57bl6.idr	exon (NM_011426, exon 10 of 21)	exon (NM_011426, exon 10 of 21)	8759.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	13.5	6.5	0.0	0.0	5.5	5.5
Merged-chr7-45560471-2	chr7	45559971	45560971	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025330, intron 5 of 8)	ID_B1|SINE|B4	5543.0	NM_025330	66065.0	Mm.285710	NM_025330	ENSMUSG00000030825	Hsd17b14	0610039E24Rik|Dhrs10|retSDR3	hydroxysteroid (17-beta) dehydrogenase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127077811-2	chr2	127077310	127078310	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026678, intron 1 of 7)	intron (NM_026678, intron 1 of 7)	7153.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	6.0	30.5	24.0	23.0	80.5	26.0
Merged-chr8-60971465-2	chr8	60970965	60971965	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007711, intron 1 of 11)	intron (NM_007711, intron 1 of 11)	11846.0	NM_173873	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	5.5	1.0	3.0	2.0	4.0	0.0
Merged-chr4-146482560-2	chr4	146482060	146483060	+	737.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19440.0	NM_001243138	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95512872-2	chr10	95512372	95513372	+	736.950012	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-2290.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35959190-5	chr18	35958621	35959621	+	736.93335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5709.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62243071-3	chr10	62242570	62243570	+	736.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9368.0	NM_009314	21337.0	Mm.8054	NM_009314	ENSMUSG00000020081	Tacr2	Nk2r|Skr|Tac2r	tachykinin receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-22381927-3	chr4	22381429	22382429	+	736.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172988, intron 3 of 8)	intron (NM_172988, intron 3 of 8)	24386.0	NR_104380	269514.0	Mm.40708	NM_172988	ENSMUSG00000040410	Fbxl4	AI836810|FBL4|FBL5	F-box and leucine-rich repeat protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31270113-3	chr3	31269596	31270596	+	736.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172861, intron 1 of 7)	L2|LINE|L2	40223.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0.0	1.5	0.0	0.5	0.0	0.0
Merged-chr10-67640884-3	chr10	67640396	67641396	+	736.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-68937.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-61494565-3	chr2	61494095	61495095	+	736.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83991.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101155865-2	chr11	101155365	101156365	+	736.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134028)	promoter-TSS (NM_134028)	-19.0	NM_134028	103768.0	Mm.142348	NM_134028	ENSMUSG00000045007	Tubg2	AI504772|Tubgl	tubulin, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-114723546-4	chr9	114723034	114724034	+	736.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_146229, exon 13 of 13)	3' UTR (NM_146229, exon 13 of 13)	-7669.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	1.5	5.0	5.0	1.5	5.0	5.0
Merged-chr3-136329219-3	chr3	136328734	136329734	+	736.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3168.0	NM_001033350	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30268676-3	chr2	30268167	30269167	+	736.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252571, intron 1 of 9)	intron (NM_001252571, intron 1 of 9)	1848.0	NM_001252570	227696.0	Mm.297949	NM_172267	ENSMUSG00000079484	Phyhd1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79838321-3	chr10	79837862	79838862	+	736.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-16070.0	NM_001077363	19205.0	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-23979569-4	chr10	23979074	23980074	+	736.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6072.0	NM_001010828	215855.0	Mm.377237	NM_001010828	ENSMUSG00000045111	Taar6	Gm228|taR-6	trace amine-associated receptor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114604495-3	chr5	114603993	114604993	+	736.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004180, intron 2 of 2)	intron (NM_001004180, intron 2 of 2)	36242.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115134924-2	chr6	115134424	115135424	+	736.8000490000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013681)	promoter-TSS (NM_013681)	22.0	NM_001111015	20965.0	Mm.441431	NM_013681	ENSMUSG00000009394	Syn2	2900074L19Rik|AI836018|AI841723	synapsin II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4720044-3	chr12	4719528	4720528	+	736.788879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029107, intron 6 of 7)	intron (NM_029107, intron 6 of 7)	18355.0	NM_029107	74855.0	Mm.269534	NM_029107	ENSMUSG00000079177	Fam228a	4930417G10Rik	family with sequence similarity 228, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39854045-3	chr18	39853545	39854545	+	736.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80548.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	4.5	9.5	8.0	6.0	9.5	8.5
Merged-chr6-120019463-3	chr6	120018961	120019961	+	736.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198703, intron 1 of 27)	polypurine|Low_complexity|Low_complexity	14850.0	NR_030487	735290.0		NR_030487	ENSMUSG00000076217	Mir706	Mirn706|mir-706|mmu-mir-706	microRNA 706	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85995039-3	chr1	85994525	85995525	+	736.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26917.0	NM_001122732	70060.0	Mm.196313	NM_027029	ENSMUSG00000026226	Spata3	1700011N12Rik|1700029H01Rik|4930424D10Rik|Mtsarg1|Tsarg1	spermatogenesis associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-18759955-5	chr8	18759428	18760428	+	736.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173189, intron 12 of 13)	MER126|DNA|DNA	-18366.0	NM_007426	11601.0	Mm.439874	NM_007426	ENSMUSG00000031465	Angpt2	Agpt2|Ang-2|Ang2	angiopoietin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82009414-2	chr11	82008914	82009914	+	736.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-26163.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr9-110716346-2	chr9	110715846	110716846	+	736.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26264.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120478862-4	chr2	120478380	120479380	+	736.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109761, intron 1 of 20)	B3|SINE|B2	1971.0	NM_001109761	12335.0	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24970535-2	chr2	24970035	24971035	+	736.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355561, intron 7 of 7)	intron (NM_001355561, intron 7 of 7)	4563.0	NM_001031808	107733.0	Mm.23010	NM_001031808	ENSMUSG00000036850	Mrpl41	MRP-L27|Rpml27	mitochondrial ribosomal protein L41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-71139577-2	chr12	71139077	71140077	+	736.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163378, intron 1 of 29)	B2_Mm2|SINE|B2	2729.0	NM_001163378	76967.0	Mm.87290	NM_029818	ENSMUSG00000034601	2700049A03Rik	Ta3|Talpid3|mKIAA0586	RIKEN cDNA 2700049A03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-63903194-2	chr7	63902694	63903694	+	736.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-13663.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	2.0	3.5	2.0	0.0	12.5	4.5
Merged-chr2-92004882-3	chr2	92004395	92005395	+	736.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011957, intron 1 of 11)	Charlie9|DNA|hAT-Charlie	19275.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	1.0	7.5	0.0	2.0	5.5	1.5
Merged-chr11-20436344-3	chr11	20435831	20436831	+	736.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17D2|LTR|ERVK	-103618.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	0.0	2.0	0.0	0.5	0.5	1.5
Merged-chr10-58231336-2	chr10	58230836	58231836	+	736.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081954, exon 1 of 1)	exon (NM_001081954, exon 1 of 1)	1339.0	NM_001081954	664783.0	Mm.482575	NM_001081954		Dux	AW822073|Dux4|Duxbl|EG664783	double homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122764653-2	chr6	122764153	122765153	+	736.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-21908.0	NM_011401	20527.0	Mm.395108	NM_011401	ENSMUSG00000003153	Slc2a3	AA408729|AL023014|AL024341|AU040424|C78366|Glut-3|Glut3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120363310-2	chr11	120362810	120363810	+	736.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172802, intron 1 of 4)	intron (NM_172802, intron 1 of 4)	1776.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75149473-3	chr14	75148969	75149969	+	736.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	13044.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-57354874-4	chr19	57354390	57355390	+	736.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040316, intron 1 of 2)	intron (NR_040316, intron 1 of 2)	6009.0	NR_040316	320879.0	Mm.375089	NR_040316	ENSMUSG00000097785	B230217O12Rik	-	RIKEN cDNA B230217O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115158162-3	chr11	115157640	115158640	+	736.700012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021411, intron 3 of 8)	intron (NM_021411, intron 3 of 8)	3962.0	NM_021411	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr8-3677441-4	chr8	3676938	3677938	+	736.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025701, intron 1 of 1)	MTEb|LTR|ERVL-MaLR	961.0	NM_025701	66682.0	Mm.29090	NM_025701	ENSMUSG00000040236	Trappc5	4021401A16Rik|TRS31	trafficking protein particle complex 5	protein-coding	0.0	0.0	0.0	6.5	0.0	0.0
Merged-chr5-103722194-3	chr5	103721711	103722711	+	736.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-31951.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94523826-2	chr16	94523326	94524326	+	736.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 1 of 7)	intron (NM_007834, intron 1 of 7)	2803.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32809908-3	chr17	32809380	32810380	+	736.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001267583)	promoter-TSS (NM_001267583)	51.0	NM_001267583	240063.0	Mm.30675	NM_183177	ENSMUSG00000055202	Zfp811	BC052046	zinc finger protein 811	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65714124-3	chr18	65713617	65714617	+	736.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177028, intron 3 of 14)	intron (NM_177028, intron 3 of 14)	15849.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	3.0	0.0	0.5	3.0	0.0	2.0
Merged-chr18-4337260-3	chr18	4336757	4337757	+	736.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 5 of 7)	intron (NM_007746, intron 5 of 7)	15696.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64079152-3	chr15	64078696	64079696	+	736.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-18748.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	6.0	14.5	6.5	6.5	28.0	5.5
Merged-chr19-41796965-3	chr19	41796468	41797468	+	736.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027667, intron 1 of 11)	intron (NM_027667, intron 1 of 11)	5116.0	NM_001163495	71085.0	Mm.21646	NM_027667	ENSMUSG00000025154	Arhgap19	4933411B03Rik|AI120128|AW546831|mFLJ00368	Rho GTPase activating protein 19	protein-coding	7.0	7.5	3.0	0.5	3.0	1.0
Merged-chr14-64624416-3	chr14	64623936	64624936	+	736.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28095.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-35388594-3	chr13	35388094	35389094	+	736.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-176546.0	NR_126478	75543.0	Mm.489052	NR_126478	ENSMUSG00000113770	1700019C18Rik	-	RIKEN cDNA 1700019C18 gene	ncRNA	0.0	2.0	4.0	0.0	2.0	3.0
Merged-chr2-84887844-3	chr2	84887388	84888388	+	736.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1196.0	NM_199223	269295.0	Mm.86447	NM_199223	ENSMUSG00000050896	Rtn4rl2	Ngr2|Ngrh1|Ngrl3	reticulon 4 receptor-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-56013508-4	chr7	56013041	56014041	+	736.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153578, intron 1 of 4)	MTD|LTR|ERVL-MaLR	6032.0	NM_153578	233280.0	Mm.389901	NM_153578	ENSMUSG00000047037	Nipa1	1110027G09Rik|A830014A18Rik|FSP3|Spg6	non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131638261-2	chr1	131637722	131638722	+	736.666626	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007799)	promoter-TSS (NM_007799)	-92.0	NM_007799	13034.0	Mm.230249	NM_007799	ENSMUSG00000004552	Ctse	A430072O03Rik|C920004C08Rik|CE|CatE	cathepsin E	protein-coding	1.5	9.0	0.0	4.0	4.5	0.0
Merged-chr10-80494800-2	chr10	80494300	80495300	+	736.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139226)	promoter-TSS (NM_139226)	-106.0	NM_139226	246086.0	Mm.250572	NM_139226	ENSMUSG00000045518	Onecut3	OC-3|Oc3	one cut domain, family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116119465-2	chr3	116118965	116119965	+	736.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011693, intron 5 of 8)	intron (NM_011693, intron 5 of 8)	10223.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	6.0	19.0	21.5	5.5	20.0	19.0
Merged-chr11-115703645-2	chr11	115703145	115704145	+	736.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008163, intron 1 of 5)	ORR1A4|LTR|ERVL-MaLR	-3717.0	NM_001313936	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47504736-3	chr14	47504272	47505272	+	736.6555179999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146085, intron 2 of 3)	intron (NM_001146085, intron 2 of 3)	32211.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	17.5	21.5	14.0	3.0	31.5	8.0
Merged-chr7-64409040-4	chr7	64408558	64409558	+	736.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028626, intron 2 of 2)	intron (NM_028626, intron 2 of 2)	16436.0	NM_001355124	73724.0	Mm.10093	NM_028626	ENSMUSG00000033429	Mcee	1110007A04Rik	methylmalonyl CoA epimerase	protein-coding	0.5	5.0	8.0	29.0	5.5	6.0
Merged-chr4-152296135-2	chr4	152295635	152296635	+	736.583313	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C2|LTR|ERVK	-1079.0	NR_037908	57295.0	Mm.277464	NM_133788	ENSMUSG00000039662	Icmt	1700008E11Rik|C80758|Gm13095|HSTE14|PPMT|STE14|pcCMT	isoprenylcysteine carboxyl methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46449003-4	chr18	46448529	46449529	+	736.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16787.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11742914-4	chr11	11742417	11743417	+	736.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301865, intron 3 of 6)	Tigger16a|DNA|TcMar-Tigger	52740.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160369504-7	chr2	160369158	160370158	+	736.571411	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-2593.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	2.5	0.5	7.0	2.5	15.0	9.5
Merged-chr10-85968251-4	chr10	85967795	85968795	+	736.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177772, intron 12 of 15)	intron (NM_177772, intron 12 of 15)	-10502.0	NM_145422	28088.0	Mm.9257	NM_145422	ENSMUSG00000001783	Rtcb	AI255213|AI463255|D10Wsu52e|FAAP|HSPC117	RNA 2',3'-cyclic phosphate and 5'-OH ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24634537-3	chr13	24634040	24635040	+	736.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178658, intron 1 of 13)	intron (NM_178658, intron 1 of 13)	-4108.0	NM_001080381	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-98973299-3	chr9	98972800	98973800	+	736.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-13073.0	NM_011810	23873.0	Mm.74605	NM_011810	ENSMUSG00000032463	Faim	-	Fas apoptotic inhibitory molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76009578-4	chr15	76009125	76010125	+	736.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168253)	promoter-TSS (NM_001168253)	-127.0	NM_001168253	105732.0	Mm.267178	NM_134087	ENSMUSG00000046761	Fam83h	AA409316	family with sequence similarity 83, member H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107297525-2	chr11	107297025	107298025	+	736.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	B1_Mm|SINE|Alu	-108144.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92699730-1	chr16	92699230	92700230	+	736.5	f1_balb.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-2401.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	1.0	4.5	0.0	5.0	2.0
Merged-chr9-122248301-2	chr9	122247801	122248801	+	736.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271873, intron 11 of 12)	intron (NM_001271873, intron 11 of 12)	25727.0	NR_106185	102465896.0		NR_106185	ENSMUSG00000098922	Mir8106	Gm27594|mmu-mir-8106	microRNA 8106	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30625648-2	chr13	30625148	30626148	+	736.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	10605.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	0.0	0.0	2.0	0.0	0.0	2.0
Merged-chr1-172334373-2	chr1	172333873	172334873	+	736.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5051.0	NM_001360808	16524.0	Mm.261168	NM_008429	ENSMUSG00000038026	Kcnj9	1700085N21Rik|Girk3|Kir3.3|mbGIRK3	potassium inwardly-rectifying channel, subfamily J, member 9	protein-coding	18.0	57.5	80.5	53.0	158.0	110.5
Merged-chr18-36021816-2	chr18	36021316	36022316	+	736.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167891, intron 8 of 9)	intron (NM_001167891, intron 8 of 9)	56986.0	NR_110349	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90246311-2	chr3	90245811	90246811	+	736.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1881.0	NM_013901	30791.0	Mm.294709	NM_013901	ENSMUSG00000052310	Slc39a1	Zip1|Zirtl	solute carrier family 39 (zinc transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100575135-2	chr15	100574635	100575635	+	736.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010127)	TTS (NM_010127)	11230.0	NM_010127	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	0.0	3.0	0.5	4.0	0.0	4.0
Merged-chr17-13044101-2	chr17	13043601	13044601	+	736.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8179.0	NM_001013832	436440.0	Mm.335670	NM_001013832	ENSMUSG00000071311	Gpr31b	12-HETER|GPR31c(t)|Gpr31|Gpr31c	G protein-coupled receptor 31, D17Leh66b region	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41991662-2	chr19	41991162	41992162	+	736.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	B1_Mus2|SINE|Alu	9899.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7505864-2	chr19	7505364	7506364	+	736.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146091, intron 1 of 12)	intron (NM_146091, intron 1 of 12)	11426.0	NM_146091	109168.0	Mm.264016	NM_146091	ENSMUSG00000024759	Atl3	4633402C03Rik|5730596K20Rik|AI465397|AW228836	atlastin GTPase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76207542-2	chr15	76207042	76208042	+	736.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163542, intron 1 of 33)	intron (NM_001163542, intron 1 of 33)	711.0	NM_201388	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66004098-2	chr5	66003598	66004598	+	736.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_027961, intron 1 of 6)	(TG)n|Simple_repeat|Simple_repeat	187.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6649090-2	chr15	6648590	6649590	+	736.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011815, intron 13 of 17)	intron (NM_011815, intron 13 of 17)	5213.0	NR_155272	102632231.0	Mm.444780	NR_155272		LOC102632231	-	uncharacterized LOC102632231	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56761940-2	chr19	56761440	56762440	+	736.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H2|LTR|ERVL-MaLR	39568.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107625648-3	chr11	107625078	107626078	+	736.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198298, intron 14 of 31)	intron (NM_198298, intron 14 of 31)	-12144.0	NR_105897	102465562.0		NR_105897	ENSMUSG00000098497	Mir6932	Gm27691|mmu-mir-6932	microRNA 6932	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62494937-2	chr10	62494437	62495437	+	736.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011157, exon 3 of 3)	exon (NM_011157, exon 3 of 3)	-8132.0	NM_001358543	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-29732886-2	chr10	29732386	29733386	+	736.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-197019.0	NM_028351	72780.0	Mm.45191	NM_028351	ENSMUSG00000019880	Rspo3	2810459H04Rik|AW742308|Cristin1|Thsd2	R-spondin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85336578-2	chr12	85336078	85337078	+	736.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145138, intron 1 of 21)	intron (NM_145138, intron 1 of 21)	2784.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-79817898-2	chr17	79817398	79818398	+	736.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78225.0	NM_178050	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167251689-2	chr2	167251189	167252189	+	736.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11152.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-84820618-2	chr11	84820118	84821118	+	736.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177564)	TTS (NM_177564)	-1103.0	NM_145433	217038.0	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik	mitochondrial rRNA methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134225491-2	chr5	134224991	134225991	+	736.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010876, intron 6 of 10)	intron (NM_010876, intron 6 of 10)	4134.0	NM_001286037	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-189007120-2	chr1	189006620	189007620	+	736.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153196, intron 1 of 17)	intron (NR_153196, intron 1 of 17)	720.0	NM_001359577	226823.0	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107037436-2	chr11	107036936	107037936	+	736.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359590, intron 27 of 27)	intron (NM_001359590, intron 27 of 27)	9213.0	NM_001163473	69066.0	Mm.40679	NM_001163473	ENSMUSG00000078607	1810010H24Rik	-	RIKEN cDNA 1810010H24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-53085333-2	chr14	53084833	53085833	+	736.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45867.0	NR_155501	102632039.0	Mm.410779	NR_155501		Gm30214	-	predicted gene, 30214	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120366577-2	chr11	120366077	120367077	+	736.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172802, intron 1 of 4)	intron (NM_172802, intron 1 of 4)	5043.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12030964-4	chr17	12030438	12031438	+	736.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016694, intron 10 of 11)	intron (NM_016694, intron 10 of 11)	-88346.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	0.0	0.0	0.0	3.5	0.0	0.0
Merged-chr14-120157300-2	chr14	120156800	120157800	+	736.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114865.0	NM_001001490	239283.0	Mm.138520	NM_001001490	ENSMUSG00000044819	Oxgr1	Cysltr3|Gm299|Gpr80|Gpr99|P2Y15	oxoglutarate (alpha-ketoglutarate) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-58139100-2	chr3	58138600	58139600	+	736.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24707.0	NR_040538	67850.0	Mm.416968	NR_040538	ENSMUSG00000100666	1700007F19Rik	-	RIKEN cDNA 1700007F19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115536874-2	chr5	115536374	115537374	+	736.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	RLTR18|LTR|ERVK	-22593.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6997793-2	chr19	6997293	6998293	+	736.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_027351, intron 2 of 5)	intron (NR_027351, intron 2 of 5)	1662.0	NR_027351	107328.0	Mm.391161	NM_153597	ENSMUSG00000047656	Trpt1	AU079016|AW045591|Tpt1|Tpt1h	tRNA phosphotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83079969-2	chr11	83079469	83080469	+	736.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR8|LTR|ERVK	14857.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105723779-2	chr3	105723279	105724279	+	736.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18321.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr15-76013353-2	chr15	76012853	76013853	+	736.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134087, intron 1 of 4)	intron (NM_134087, intron 1 of 4)	983.0	NM_134087	105732.0	Mm.267178	NM_134087	ENSMUSG00000046761	Fam83h	AA409316	family with sequence similarity 83, member H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120318682-2	chr8	120318182	120319182	+	736.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90452.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8796095-2	chr10	8795595	8796595	+	736.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 4 of 19)	intron (NM_175155, intron 4 of 19)	89975.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129589075-2	chr2	129588575	129589575	+	736.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3764.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.0	6.0	4.5	18.0	2.5	1.0
Merged-chr3-87377449-3	chr3	87376940	87377940	+	736.466675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136236, intron 1 of 8)	intron (NM_001136236, intron 1 of 8)	1053.0	NM_178165	229499.0	Mm.255203	NM_153090	ENSMUSG00000059994	Fcrl1	A230020G22Rik|Bxmas1|Bxmh1|Bxmh1b|Fcrh1|Fcrh1l|Fcrh1s|Ifgp1	Fc receptor-like 1	protein-coding	70.5	180.0	200.5	1.0	37.5	20.5
Merged-chr5-32755291-3	chr5	32754771	32755771	+	736.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177298, intron 3 of 7)	intron (NM_177298, intron 3 of 7)	-8929.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	5.0	14.5	2.5	1.5	3.5	4.0
Merged-chr2-131056414-3	chr2	131055947	131056947	+	736.43335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033615, intron 5 of 20)	intron (NM_033615, intron 5 of 20)	7367.0	NR_136922	110751.0	Mm.108550	NM_033615	ENSMUSG00000027318	Adam33	Adaml	a disintegrin and metallopeptidase domain 33	protein-coding	15.0	2.5	7.0	15.5	2.5	1.0
Merged-chr2-159735368-2	chr2	159734800	159735800	+	736.416626	f0_c57.idr|f1_c57bl6.idr	Intergenic	L1MEg|LINE|L1	-212041.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	4.5	30.5	44.0	0.5	12.0	19.5
Merged-chr16-4627325-2	chr16	4626825	4627825	+	736.400024	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_030205, exon 28 of 28)	3' UTR (NM_030205, exon 28 of 28)	-2379.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20727083-4	chr9	20726597	20727597	+	736.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357635)	promoter-TSS (NM_001357635)	-94.0	NM_001357635	244723.0	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-23890912-2	chr5	23890370	23891370	+	736.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38637.0	NR_028536	100217436.0		NR_028536		Snord93	Gm22397|MBII-336	small nucleolar RNA, C/D box 93	snoRNA	0.0	0.0	1.0	3.5	0.0	1.0
Merged-chr9-104235074-2	chr9	104234574	104235574	+	736.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 5 of 56)	intron (NM_001359740, intron 5 of 56)	27856.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53267655-2	chr19	53267155	53268155	+	736.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-12450.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-56182525-2	chr13	56182021	56183021	+	736.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3636.0	NM_001168615	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	13.5	56.0	60.5	46.0	110.5	84.5
Merged-chr14-74917918-4	chr14	74917364	74918364	+	736.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	30013.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97963692-3	chr3	97963191	97964191	+	736.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033779, intron 1 of 1)	intron (NM_001033779, intron 1 of 1)	33518.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-10026398-3	chr8	10025895	10026895	+	736.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033622, intron 4 of 6)	L1M4|LINE|L1	19762.0	NM_033622	24099.0	Mm.28835	NM_033622	ENSMUSG00000031497	Tnfsf13b	BAFF|BLyS|D8Ertd387e|TALL-1|TALL1|THANK|TNFSF20|Tnlg7a|zTNF4	tumor necrosis factor (ligand) superfamily, member 13b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-13278286-3	chr2	13277790	13278790	+	736.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081084, intron 66 of 66)	intron (NM_001081084, intron 66 of 66)	-6875.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129353865-3	chr6	129353353	129354353	+	736.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177686, intron 3 of 5)	intron (NM_177686, intron 3 of 5)	3609.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30935627-2	chr7	30935127	30936127	+	736.299988	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	8402.0	NM_032541	84506.0	Mm.439939	NM_032541	ENSMUSG00000050440	Hamp	Hamp1|Hepc|Hepc1	hepcidin antimicrobial peptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121309416-4	chr9	121308924	121309924	+	736.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	11922.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	3.0	4.0	0.0	0.0	1.5	0.0
Merged-chr13-20049826-4	chr13	20049333	20050333	+	736.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-40674.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.0	3.5	1.0	0.0	1.5	0.5
Merged-chr1-171347039-2	chr1	171346539	171347539	+	736.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011070, intron 1 of 3)	intron (NM_011070, intron 1 of 3)	1364.0	NM_011070	18637.0	Mm.10756	NM_011070	ENSMUSG00000006412	Pfdn2	ESTM27|W48336	prefoldin 2	protein-coding	6.0	7.0	4.0	0.0	0.0	1.0
Merged-chr17-3448910-2	chr17	3448416	3449416	+	736.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011878, intron 10 of 26)	intron (NM_011878, intron 10 of 26)	-33399.0	NM_001286758	24001.0	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	0.0	0.5	6.0	0.0	13.0	1.0
Merged-chr7-138847642-3	chr7	138847120	138848120	+	736.238098	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026391, intron 2 of 8)	intron (NM_026391, intron 2 of 8)	1234.0	NM_026391	52432.0	Mm.258739	NM_026391	ENSMUSG00000041769	Ppp2r2d	1300017E19Rik|D7Ertd753e|MDS026	protein phosphatase 2, regulatory subunit B, delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59767125-4	chr9	59766654	59767654	+	736.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173018, intron 1 of 43)	intron (NM_173018, intron 1 of 43)	15980.0	NM_173018	270163.0	Mm.249545	NM_173018	ENSMUSG00000039585	Myo9a	4732465J09Rik|C130068I12Rik|C230003M11	myosin IXa	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69658390-4	chr3	69657886	69658886	+	736.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-59426.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	8.0	45.0	28.5	13.0	54.5	33.0
Merged-chr2-32550002-3	chr2	32549479	32550479	+	736.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153560, intron 1 of 10)	intron (NM_153560, intron 1 of 10)	14620.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-54513686-3	chr9	54513162	54514162	+	736.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12036.0	NM_172771	235380.0	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136471036-3	chr6	136470476	136471476	+	736.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-47875.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	12.5	4.0	8.5	15.0	16.0	8.0
Merged-chr6-29530959-2	chr6	29530459	29531459	+	736.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252382, intron 1 of 8)	intron (NM_001252382, intron 1 of 8)	1677.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102398166-2	chr12	102397655	102398655	+	736.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 11 of 13)	intron (NM_011175, intron 11 of 13)	41658.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	27.5	27.0	17.0	9.5	26.5	29.5
Merged-chr7-63910415-2	chr7	63909903	63910903	+	736.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-6454.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	80.0	165.5	94.0	109.0	149.5	111.0
Merged-chr9-104604888-2	chr9	104604372	104605372	+	736.166626	f0_balb.idr|f1_balb.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	35389.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	21.0	0.0	1.5	10.5	7.0	11.5
Merged-chr4-33018551-4	chr4	33018039	33019039	+	736.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027491, intron 6 of 6)	intron (NM_027491, intron 6 of 6)	12784.0	NR_036602	100504166.0	Mm.426309	NR_036602	ENSMUSG00000085037	4933421O10Rik	-	RIKEN cDNA 4933421O10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59778720-4	chr11	59778222	59779222	+	736.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_012027, exon 24 of 24)	3' UTR (NM_012027, exon 24 of 24)	8500.0	NR_110894	194908.0	Mm.344651	NM_183139	ENSMUSG00000043648	Pld6	4933433K01Rik|Gm10|Zuc|mZuc|mitoPLD	phospholipase D family, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21996849-3	chr16	21996344	21997344	+	736.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1302.0	NM_001289581	239759.0	Mm.33192	NM_153404	ENSMUSG00000044626	Liph	C130037N08Rik|D16Wsu119e|H06|Lpdlr|P3|PLA1B|lpd1|lpd2|mPA-PLA1	lipase, member H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66646481-3	chr9	66645976	66646976	+	736.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53361.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-133146142-3	chr1	133145622	133146622	+	736.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14956.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0.0	0.0	1.5	0.0	0.0	1.5
Merged-chr17-28770152-5	chr17	28769645	28770645	+	736.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011950, intron 2 of 11)	CpG-6188	828.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-31023455-2	chr4	31022955	31023955	+	736.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	358859.0	NR_040655	75332.0	Mm.108636	NR_040655		4930556G01Rik	-	RIKEN cDNA 4930556G01 gene	ncRNA	1.5	0.5	0.5	0.0	1.0	0.0
Merged-chr11-85141853-2	chr11	85141353	85142353	+	736.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1898.0	NM_001029934	237898.0	Mm.178524	NM_001029934	ENSMUSG00000000804	Usp32	2900074J03Rik|6430526O11Rik|AW045245	ubiquitin specific peptidase 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-102847780-1	chr13	102847280	102848280	+	736.0	f0_balb.idr	intron (NM_175171, intron 5 of 28)	intron (NM_175171, intron 5 of 28)	87525.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-105963270-3	chr12	105962806	105963806	+	736.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-46957.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	0.0	7.0	2.0	0.0	6.0	1.0
Merged-chr2-167642443-2	chr2	167641943	167642943	+	736.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145538)	TTS (NM_145538)	-10438.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5487852-1	chr11	5487352	5488352	+	736.0	f1_balb.idr	Intergenic	B4|SINE|B4	-32789.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	7.0	1.0	0.5	0.0	3.5	0.5
Merged-chr10-78151017-2	chr10	78150517	78151517	+	736.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18751.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92500930-2	chr5	92500430	92501430	+	736.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	ID_B1|SINE|B4	4727.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	6.5	5.5	2.5	0.5	13.0	4.0
Merged-chr11-70431773-2	chr11	70431273	70432273	+	736.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271360)	promoter-TSS (NM_001271360)	-807.0	NM_001271360	216869.0	Mm.203747	NM_145429	ENSMUSG00000060216	Arrb2	AI326910|AW122872|Arr3	arrestin, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133189262-2	chr4	133188762	133189762	+	736.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 5 of 8)	intron (NM_153423, intron 5 of 8)	-6393.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	4.5	11.5	7.5	16.5	27.5	14.0
Merged-chr5-65700251-1	chr5	65699751	65700751	+	736.0	f1_balb.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-2395.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	7.5	16.5	13.0	3.5	16.0	11.5
Merged-chr16-3233255-1	chr16	3232755	3233755	+	736.0	f1_balb.idr	Intergenic	Intergenic	-359143.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-44605652-1	chr18	44605152	44606152	+	736.0	f0_balb.idr	intron (NM_001085373, intron 3 of 18)	intron (NM_001085373, intron 3 of 18)	-56013.0	NR_026853	626275.0	Mm.427116	NR_026853	ENSMUSG00000097610	A930012L18Rik	-	RIKEN cDNA A930012L18 gene	ncRNA	3.5	0.0	0.5	1.5	0.0	2.0
Merged-chr15-102144748-2	chr15	102144248	102145248	+	736.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008344, exon 1 of 4)	exon (NM_008344, exon 1 of 4)	562.0	NM_008344	16012.0	Mm.358609	NM_008344	ENSMUSG00000023046	Igfbp6	IGFBP-6	insulin-like growth factor binding protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-60988715-2	chr14	60988215	60989215	+	736.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013869, intron 5 of 9)	intron (NM_013869, intron 5 of 9)	49272.0	NM_001164155	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	9.5	13.5	11.0	2.5	4.0	13.0
Merged-chr11-60932944-4	chr11	60932416	60933416	+	736.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008928, intron 1 of 11)	intron (NM_008928, intron 1 of 11)	859.0	NM_008928	26397.0	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95684764-2	chr3	95684264	95685264	+	736.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301705, intron 3 of 17)	intron (NM_001301705, intron 3 of 17)	3153.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0.0	0.0	0.5	1.0	2.5	0.0
Merged-chr12-3234302-2	chr12	3233802	3234802	+	736.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1489.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-50023020-2	chr18	50022537	50023537	+	736.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	-7947.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	4.0	12.5	3.5	6.0	6.5	1.0
Merged-chr15-78933800-1	chr15	78933300	78934300	+	736.0	f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	-1133.0	NM_133800	97961.0	Mm.157216	NM_133800	ENSMUSG00000033099	Nol12	C78541|Nop25	nucleolar protein 12	protein-coding	0.5	5.0	0.0	3.0	1.5	0.0
Merged-chr17-33997071-1	chr17	33996571	33997571	+	736.0	f1_c57bl6.idr	exon (NM_001347346, exon 5 of 8)	exon (NM_001347346, exon 5 of 8)	3262.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	1.5	26.0	14.0	3.0	7.0	7.0
Merged-chr5-72791558-2	chr5	72791058	72792058	+	736.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	RLTR22_Mur|LTR|ERVK	-38781.0	NM_001122754	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-56326284-2	chr8	56325784	56326784	+	736.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31732.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	2.0	16.0	14.0	6.5	8.5	8.5
Merged-chr8-46432073-2	chr8	46431573	46432573	+	736.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38964.0	NM_007981	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-4934737-3	chr5	4934224	4935224	+	736.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 11 of 14)	intron (NM_011074, intron 11 of 14)	-176508.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141005997-2	chr4	141005497	141006497	+	736.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164366, intron 25 of 28)	intron (NM_001164366, intron 25 of 28)	-4427.0	NM_001161799	17150.0	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-51735251-2	chr15	51734751	51735751	+	736.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	130210.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	2.0	1.5	1.0	6.5	9.0	9.0
Merged-chr14-62244599-2	chr14	62244099	62245099	+	736.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48380.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35155158-2	chr16	35154658	35155658	+	736.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001012765)	promoter-TSS (NM_001012765)	-478.0	NM_001012765	224129.0	Mm.41137	NM_001012765	ENSMUSG00000022840	Adcy5	AW121902|Ac5	adenylate cyclase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148774916-2	chr4	148774416	148775416	+	736.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29476.0	NM_001159344	69743.0	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	0.0	0.5	0.5	2.5	0.0	1.5
Merged-chr17-47115948-2	chr17	47115448	47116448	+	736.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16E1|LTR|ERVL	-24994.0	NM_001097623	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-133545829-2	chr2	133545329	133546329	+	736.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6330.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62794819-2	chr10	62794319	62795319	+	736.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2451.0	NM_026201	67500.0	Mm.196371	NM_026201	ENSMUSG00000020074	Ccar1	2610511G16Rik|9430036H15Rik|Carp1	cell division cycle and apoptosis regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129340420-1	chr2	129339920	129340920	+	736.0	f0_balb.idr	Intergenic	Intergenic	-29482.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	7.0	1.0	13.0	16.0	22.0	7.5
Merged-chr9-57562508-2	chr9	57562008	57563008	+	736.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022813, intron 1 of 8)	intron (NM_022813, intron 1 of 8)	1564.0	NM_022813	24044.0	Mm.286069	NM_022813	ENSMUSG00000040188	Scamp2	AI875466|Sc2	secretory carrier membrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16183948-1	chr7	16183448	16184448	+	736.0	f1_balb.idr	intron (NM_001277988, intron 9 of 12)	intron (NM_001277988, intron 9 of 12)	8553.0	NR_102730	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	7.5	1.0	0.0	0.0	11.5	2.5
Merged-chr4-85984188-2	chr4	85983688	85984688	+	736.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A1|LTR|ERVK	-69727.0	NM_029967	77739.0	Mm.331690	NM_029967	ENSMUSG00000066113	Adamtsl1	5930437A14Rik|6720426B09Rik|ADAMTSL-1	ADAMTS-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80704641-2	chr10	80704141	80705141	+	736.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027829, intron 8 of 9)	intron (NM_027829, intron 8 of 9)	1948.0	NM_027829	71564.0	Mm.35802	NM_027829	ENSMUSG00000055862	Izumo4	9030607L17Rik|AI550407	IZUMO family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-53080144-2	chr2	53079644	53080644	+	736.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 9 of 26)	intron (NM_172409, intron 9 of 26)	111043.0	NM_018785	56194.0	Mm.257474	NM_018785	ENSMUSG00000061136	Prpf40a	2810012K09Rik|FBP-11|FBP11|Fnbp11|Fnbp3	pre-mRNA processing factor 40A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180972593-1	chr2	180972093	180973093	+	736.0	f1_c57bl6.idr	intron (NM_145760, intron 5 of 13)	intron (NM_145760, intron 5 of 13)	5293.0	NM_001177706	228998.0	Mm.33765	NM_145760	ENSMUSG00000027575	Arfgap1	AI115377|Arf1gap	ADP-ribosylation factor GTPase activating protein 1	protein-coding	0.5	1.0	0.0	0.0	0.0	0.0
Merged-chr17-26468627-2	chr17	26468133	26469133	+	736.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39839.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	1.5	0.0	1.5	4.5	3.5	0.0
Merged-chr9-57435188-2	chr9	57434688	57435688	+	736.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152146, intron 2 of 5)	intron (NR_152146, intron 2 of 5)	4548.0	NM_001357913	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-70599583-2	chr10	70599083	70600083	+	736.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178621)	promoter-TSS (NM_178621)	-292.0	NM_178621	70911.0	Mm.19825	NM_178621	ENSMUSG00000037747	Phyhipl	4921522K17Rik|AI267048	phytanoyl-CoA hydroxylase interacting protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-28634057-2	chr2	28633557	28634557	+	736.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-7176.0	NM_001289575	64930.0	Mm.224354	NM_022887	ENSMUSG00000026812	Tsc1	-	tuberous sclerosis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85081886-1	chr8	85081386	85082386	+	736.0	f1_balb.idr	intron (NM_001001493, intron 3 of 3)	intron (NM_001001493, intron 3 of 3)	923.0	NM_001001493	414077.0	Mm.35790	NM_001001493	ENSMUSG00000059355	Wdr83os	-	WD repeat domain 83 opposite strand	protein-coding	25.0	132.5	107.0	60.5	127.0	87.5
Merged-chr19-16318749-1	chr19	16318249	16319249	+	736.0	f0_balb.idr	intron (NM_008139, intron 3 of 6)	intron (NM_008139, intron 3 of 6)	-3745.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	2.5	0.0	0.5	4.0	0.5	0.0
Merged-chr10-128539985-2	chr10	128539485	128540485	+	736.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7759.0	NM_134003	103284.0	Mm.68289	NM_134003	ENSMUSG00000039810	Zc3h10	AI790326	zinc finger CCCH type containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57734130-1	chr10	57733630	57734630	+	736.0	f0_balb.idr	intron (NM_001039050, intron 4 of 4)	MTEa|LTR|ERVL-MaLR	-50793.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-9135206-2	chr15	9134706	9135706	+	736.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 2 of 9)	intron (NM_013787, intron 2 of 9)	5248.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46526697-1	chr19	46526197	46527197	+	736.0	f1_balb.idr	Intergenic	Intergenic	25049.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	12.0	15.0	3.0	6.5	2.0	0.5
Merged-chr4-31963140-2	chr4	31962640	31963640	+	736.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172688)	promoter-TSS (NM_172688)	-967.0	NM_009316	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	19.5	14.0	38.5	6.5	35.5	21.0
Merged-chr17-29451810-2	chr17	29451310	29452310	+	736.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39235.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr7-6330707-2	chr7	6330207	6331207	+	736.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033249)	promoter-TSS (NM_001033249)	-273.0	NM_001033249	213011.0	Mm.333558	NM_001033249	ENSMUSG00000030443	Zfp583	BC056221|Znf583	zinc finger protein 583	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-28502959-2	chr2	28502459	28503459	+	736.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139197, intron 5 of 6)	intron (NM_139197, intron 5 of 6)	6068.0	NM_139197	227671.0	Mm.484270	NM_139197	ENSMUSG00000026829	Gbgt1	Fgs|Fs	globoside alpha-1,3-N-acetylgalactosaminyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73376332-2	chr7	73375832	73376832	+	736.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040324)	promoter-TSS (NR_040324)	-558.0	NR_040324	319783.0	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-73211824-2	chr6	73211324	73212324	+	736.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164669, intron 2 of 76)	intron (NM_001164669, intron 2 of 76)	9807.0	NM_001164669	330355.0	Mm.333166	NM_001164669	ENSMUSG00000052861	Dnah6	9830168K20|A730004I20Rik|Dnahc6|mKIAA1697|mdhc6	dynein, axonemal, heavy chain 6	protein-coding	10.0	1.0	1.5	0.0	0.0	1.5
Merged-chr12-3896691-2	chr12	3896191	3897191	+	736.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 4 of 17)	intron (NM_153743, intron 4 of 17)	4947.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98820835-4	chr13	98820433	98821433	+	735.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5484.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19932841-3	chr7	19932337	19933337	+	735.920654	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11694.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125349947-3	chr5	125349476	125350476	+	735.916687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8882.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	2.5	6.5	1.0	5.0	6.0	9.0
Merged-chr13-62620944-3	chr13	62620455	62621455	+	735.9111330000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173381, intron 1 of 2)	intron (NM_173381, intron 1 of 2)	3227.0	NM_001324406	211378.0	Mm.247448	NM_173381	ENSMUSG00000072066	6720489N17Rik	9330128I06	RIKEN cDNA 6720489N17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139357256-2	chr5	139356756	139357756	+	735.900024	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001160265)	TTS (NM_001160265)	4639.0	NM_001160265	545817.0	Mm.482474	NM_001160265	ENSMUSG00000029541	Cyp2w1	Gm455	cytochrome P450, family 2, subfamily w, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-74411669-3	chr16	74411174	74412174	+	735.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175549, exon 1 of 28)	5' UTR (NM_175549, exon 1 of 28)	151.0	NM_001358494	268902.0	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.0	9.5	0.0	0.0	5.5	0.0
Merged-chr5-76706011-3	chr5	76705540	76706540	+	735.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114326.0	NM_199032	381644.0	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117195672-4	chr2	117195134	117196134	+	735.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10507.0	NR_030440	732489.0		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136548566-3	chr6	136548064	136549064	+	735.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	29713.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	43.5	36.5	32.5	26.5	36.0	19.5
Merged-chr14-86679049-3	chr14	86678557	86679557	+	735.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019670, intron 27 of 27)	B4|SINE|B4	433087.0	NR_040457	75155.0	Mm.399239	NR_040457	ENSMUSG00000115271	4930529K09Rik	4930507G21Rik	RIKEN cDNA 4930529K09 gene	ncRNA	12.5	0.0	18.5	2.5	18.0	15.0
Merged-chr10-22645342-3	chr10	22644857	22645857	+	735.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178934, intron 1 of 4)	CpG	346.0	NM_178934	353169.0	Mm.473705	NM_178934	ENSMUSG00000037490	Slc2a12	GLUT-12|Glut12	solute carrier family 2 (facilitated glucose transporter), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-111329989-2	chr5	111329489	111330489	+	735.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301666)	promoter-TSS (NM_001301666)	-708.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	22.5	46.0	33.0	37.0	68.5	67.0
Merged-chr11-83936588-2	chr11	83936088	83937088	+	735.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5502.0	NM_030096	78394.0	Mm.280544	NM_030096	ENSMUSG00000020677	Ddx52	2700029C06Rik|ROK1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 52	protein-coding	1.5	0.0	0.0	1.5	0.0	0.0
Merged-chr14-21078115-3	chr14	21077623	21078623	+	735.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243041, intron 1 of 10)	intron (NM_001243041, intron 1 of 10)	1971.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	2.0	0.0	0.0	4.0	0.0	0.0
Merged-chr16-57188507-3	chr16	57188112	57189112	+	735.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 11 of 17)	L1_Mus3|LINE|L1	12859.0	NM_001358434	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	6.0	16.0	10.0	1.0	11.5	13.0
Merged-chr11-68866771-2	chr11	68866271	68867271	+	735.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-13640.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73062446-3	chr15	73061918	73062918	+	735.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1214.0	NM_001164643	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	12.5	3.5	9.0	9.0	8.0	2.0
Merged-chr2-33452354-3	chr2	33451846	33452846	+	735.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027947, exon 4 of 4)	3' UTR (NM_027947, exon 4 of 4)	16186.0	NM_027947	71834.0	Mm.44186	NM_027947	ENSMUSG00000026788	Zbtb43	1700010E06Rik|Zfp297b|mKIAA0414	zinc finger and BTB domain containing 43	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51907380-3	chr14	51906877	51907877	+	735.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360266, intron 11 of 15)	intron (NM_001360266, intron 11 of 15)	4612.0	NM_001360269	29811.0	Mm.26722	NM_013864	ENSMUSG00000004558	Ndrg2	AI182517|AU040374|Ndr2|SYLD	N-myc downstream regulated gene 2	protein-coding	0.5	0.5	1.0	9.5	0.0	1.0
Merged-chr6-50377129-3	chr6	50376605	50377605	+	735.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163645, intron 2 of 21)	intron (NM_001163645, intron 2 of 21)	5732.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	77.0	124.0	131.5	45.0	46.5	66.0
Merged-chr7-44353150-2	chr7	44352650	44353650	+	735.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001034115, exon 24 of 25)	exon (NM_001034115, exon 24 of 25)	21880.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111108124-2	chr10	111107624	111108624	+	735.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56678.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29329742-2	chr6	29329242	29330242	+	735.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_207258, intron 4 of 6)	intron (NM_207258, intron 4 of 6)	10602.0	NM_001289664	330277.0	Mm.87624	NM_207258	ENSMUSG00000039742	Fam71f1	GARI-L1|Gm764|NYD-SP18	family with sequence similarity 71, member F1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144723733-2	chr3	144723233	144724233	+	735.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3398.0	NM_001282037	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-121228686-2	chr6	121228186	121229186	+	735.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17220.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31380019-3	chr14	31379522	31380522	+	735.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 3 of 7)	intron (NM_001347585, intron 3 of 7)	37655.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-71307662-4	chr4	71307160	71308160	+	735.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-772732.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-150015556-3	chr1	150015072	150016072	+	735.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-54282.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81288790-3	chr10	81288283	81289283	+	735.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282095, intron 1 of 20)	intron (NM_001282095, intron 1 of 20)	2484.0	NM_013769	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64263204-3	chr15	64262707	64263707	+	735.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	49466.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-63174619-3	chr10	63174106	63175106	+	735.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182992, intron 2 of 19)	intron (NM_182992, intron 2 of 19)	29346.0	NM_182992	68802.0	Mm.259767	NM_182992	ENSMUSG00000020067	Mypn	1110056A04Rik|9830112J03|AI853556|mKIAA4170	myopalladin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31124481-3	chr16	31123970	31124970	+	735.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030138, intron 10 of 22)	intron (NM_030138, intron 10 of 22)	-43038.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73088946-2	chr15	73088446	73089446	+	735.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1466.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-98401540-3	chr14	98401038	98402038	+	735.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-231773.0	NM_007826	13134.0	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund family transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95950897-3	chr13	95950335	95951335	+	735.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58913.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	2.5	1.5	0.5	0.0	0.0	0.0
Merged-chr19-32881657-3	chr19	32881203	32882203	+	735.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	124126.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0.0	11.0	7.5	0.0	6.0	7.0
Merged-chr1-172147399-2	chr1	172146899	172147899	+	735.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153555)	promoter-TSS (NM_153555)	-616.0	NR_151641	98193.0	Mm.159915	NM_153555	ENSMUSG00000026554	Dcaf8	AA408877|AA433120|AA792214|AU018973|C76055|D1Dau35e|D1Ucla4|H326|Wdr42a	DDB1 and CUL4 associated factor 8	protein-coding	22.0	33.5	19.5	7.5	16.5	12.5
Merged-chr1-78536917-4	chr1	78536410	78537410	+	735.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026713, intron 6 of 6)	intron (NM_026713, intron 6 of 6)	25850.0	NM_026713	68393.0	Mm.41325	NM_026713	ENSMUSG00000012187	Mogat1	0610030A14Rik|1110064N14Rik|Dgat2l|Dgat2l1|MGAT1|WI1-2612I11.1|mDC2	monoacylglycerol O-acyltransferase 1	protein-coding	2.0	8.5	13.0	7.5	5.5	13.0
Merged-chr14-54576696-3	chr14	54576197	54577197	+	735.6190190000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010590, exon 1 of 8)	exon (NM_010590, exon 1 of 8)	964.0	NM_010590	16475.0	Mm.100253	NM_010590	ENSMUSG00000022178	Ajuba	Jub	ajuba LIM protein	protein-coding	0.0	8.5	7.5	4.0	2.5	2.5
Merged-chr6-115485876-3	chr6	115485349	115486349	+	735.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 7 of 7)	intron (NM_001308354, intron 7 of 7)	-58855.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-28007855-3	chr3	28007364	28008364	+	735.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 1 of 25)	intron (NM_008875, intron 1 of 25)	23693.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135023500-3	chr5	135023088	135024088	+	735.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016801, exon 1 of 10)	exon (NM_016801, exon 1 of 10)	106.0	NR_133683	20907.0	Mm.6225	NM_016801	ENSMUSG00000007207	Stx1a	HPC-1	syntaxin 1A (brain)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102753559-2	chr11	102753059	102754059	+	735.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7876.0	NM_009613	11488.0	Mm.89854	NM_009613	ENSMUSG00000020926	Adam11	AW060611|Mdc	a disintegrin and metallopeptidase domain 11	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr5-107725170-4	chr5	107724618	107725618	+	735.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010278)	promoter-TSS (NM_010278)	687.0	NM_001267621	14581.0	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88849304-3	chr6	88848830	88849830	+	735.583313	f1_balb.idr|f1_c57bl6.idr	exon (NM_176973, exon 3 of 8)	exon (NM_176973, exon 3 of 8)	6476.0	NR_045880	100038356.0	Mm.442704	NR_045880	ENSMUSG00000085828	Gm15612	-	predicted gene 15612	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59776069-3	chr15	59775559	59776559	+	735.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18900.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88805974-3	chr4	88805484	88806484	+	735.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243155).3	promoter-TSS (NM_001243155).3	-42.0	NM_001243165	545647.0	Mm.380019	NM_001243165	ENSMUSG00000096582	Gm13289	-	predicted gene 13289	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33080230-4	chr16	33079730	33080730	+	735.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172823, intron 6 of 16)	intron (NM_172823, intron 6 of 16)	17709.0	NM_172823	239833.0	Mm.131951	NM_172823	ENSMUSG00000022802	Lmln	5330415H22Rik|AI465495	leishmanolysin-like (metallopeptidase M8 family)	protein-coding	10.5	7.5	2.5	17.0	15.0	4.5
Merged-chr17-12742277-2	chr17	12741777	12742777	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_027773, intron 1 of 2)	CpG	966.0	NR_027784	104103.0	Mm.26553	NR_002853	ENSMUSG00000078247	Airn	2810051F02Rik|2810434M15Rik|AI256653|AI597500|AW049873|Air|B930018I07Rik|D17Ertd663e|IGF2RAS	antisense Igf2r RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92435017-3	chr16	92434540	92435540	+	735.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	31129.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130826946-2	chr4	130826446	130827446	+	735.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011520)	TTS (NM_011520)	34409.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19712458-2	chr10	19711958	19712958	+	735.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172786)	promoter-TSS (NM_172786)	-129.0	NM_172786	237313.0	Mm.234667	NM_172786	ENSMUSG00000020007	Il20ra	E230031K19	interleukin 20 receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87023610-2	chr11	87023110	87024110	+	735.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-29848.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136065293-2	chr1	136064793	136065793	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081023, intron 2 of 43)	intron (NM_001081023, intron 2 of 43)	12392.0	NM_014193	12292.0	Mm.4418	NM_014193	ENSMUSG00000026407	Cacna1s	AW493108|Cav1.1|Cchl1a3|DHPR|fmd|mdg|sj	calcium channel, voltage-dependent, L type, alpha 1S subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126970610-2	chr8	126970110	126971110	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172762, intron 2 of 10)	ID_B1|SINE|B4	469.0	NM_172762	52202.0	Mm.28199	NM_172762	ENSMUSG00000033931	Rbm34	4930547K05Rik|6330444B11|D8Ertd233e	RNA binding motif protein 34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86571693-2	chr11	86571193	86572193	+	735.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12465.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25919152-2	chr15	25918652	25919652	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 3 of 8)	B1F1|SINE|Alu	-14400.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167493931-2	chr2	167493431	167494431	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030743, intron 1 of 7)	intron (NM_030743, intron 1 of 7)	-1057.0	NM_001356523	263876.0	Mm.34342	NM_170756	ENSMUSG00000047030	Spata2	AI504642|mKIAA0757	spermatogenesis associated 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-104741731-2	chr2	104741231	104742231	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144804, intron 1 of 8)	intron (NM_144804, intron 1 of 8)	1070.0	NM_144804	211896.0	Mm.288805	NM_144804	ENSMUSG00000027173	Depdc7	AV216087	DEP domain containing 7	protein-coding	1.5	2.5	0.5	1.5	4.5	0.5
Merged-chr2-100370616-2	chr2	100370116	100371116	+	735.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-1254132.0	NM_009020	19374.0	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	0.0	3.0	0.0	0.0	3.0	0.0
Merged-chr5-72270576-2	chr5	72270076	72271076	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 15 of 22)	intron (NR_003966, intron 15 of 22)	67233.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40821266-2	chr4	40820766	40821766	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022305, intron 2 of 5)	intron (NM_022305, intron 2 of 5)	28872.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70116762-2	chr14	70116262	70117262	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021328, intron 1 of 8)	intron (NM_021328, intron 1 of 8)	16669.0	NM_001360404	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-32185470-2	chr6	32184970	32185970	+	735.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_175750, exon 22 of 32)	exon (NM_175750, exon 22 of 32)	135182.0	NM_029587	76382.0	Mm.23510	NM_029587	ENSMUSG00000029766	1700012A03Rik	AI429084	RIKEN cDNA 1700012A03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50429539-2	chr16	50429039	50430039	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 1 of 16)	intron (NM_027444, intron 1 of 16)	2850.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102287692-2	chr15	102287192	102288192	+	735.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	8236.0	NM_134100	106073.0	Mm.287740	NM_134100	ENSMUSG00000045665	Mfsd5	AA409375|AW556797|D15Mgi27	major facilitator superfamily domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165400417-3	chr2	165399910	165400910	+	735.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029021)	promoter-TSS (NM_029021)	-16.0	NM_029021	74614.0	Mm.72179	NM_029021	ENSMUSG00000027670	Ocstamp	4833422F24Rik|OC-STAMP	osteoclast stimulatory transmembrane protein	protein-coding	0.0	0.0	1.5	0.0	0.0	6.5
Merged-chr2-16182376-2	chr2	16181876	16182876	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310455, intron 35 of 38)	intron (NM_001310455, intron 35 of 38)	-173928.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35126510-2	chr7	35126010	35127010	+	735.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7217.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	0.0	1.5	0.5	5.0	3.5	2.5
Merged-chr9-89707073-2	chr9	89706573	89707573	+	735.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2030.0	NM_025360	66111.0	Mm.27606	NM_025360	ENSMUSG00000032353	Tmed3	1200002G13Rik|AW546672|P24b	transmembrane p24 trafficking protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12735150-2	chr18	12734650	12735650	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028341, intron 12 of 13)	intron (NM_028341, intron 12 of 13)	-6205.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34769232-2	chr10	34768732	34769732	+	735.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	285832.0	NM_010237	14302.0	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72038451-2	chr6	72037951	72038951	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_046180, intron 1 of 2)	ORR1C2|LTR|ERVL-MaLR	4077.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19626614-2	chr7	19626114	19627114	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009046, intron 2 of 10)	PB1D7|SINE|Alu	2824.0	NM_001290457	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128381968-2	chr7	128381468	128382468	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 4 of 4)	intron (NM_026418, intron 4 of 4)	36204.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34805026-2	chr1	34804526	34805526	+	735.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_183019, exon 2 of 10)	exon (NM_183019, exon 2 of 10)	3304.0	NM_183019	226970.0	Mm.41604	NM_183019	ENSMUSG00000037509	Arhgef4	9330140K16Rik|Asef	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80205447-2	chr18	80204947	80205947	+	735.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1351.0	NM_001038608	27366.0	Mm.172411	NM_025299	ENSMUSG00000057130	Txnl4a	D18Wsu98e|Dim1|Txnl4|U5-15kD|U5-15kDa	thioredoxin-like 4A	protein-coding	0.0	0.0	3.0	0.0	0.0	3.0
Merged-chr10-117874809-2	chr10	117874309	117875309	+	735.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28835.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75098027-2	chr8	75097527	75098527	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010442, intron 3 of 4)	intron (NM_010442, intron 3 of 4)	4409.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.0	1.5	2.0	5.5	7.5	8.0
Merged-chr13-98833312-2	chr13	98832812	98833812	+	735.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17863.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155573577-2	chr4	155573077	155574077	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355599, intron 1 of 10)	PB1D10|SINE|Alu	9762.0	NM_001355599	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0.0	8.0	2.5	0.0	6.5	0.0
Merged-chr17-27587439-1	chr17	27586939	27587939	+	735.5	f1_c57bl6.idr	intron (NM_001291046, intron 2 of 4)	intron (NM_001291046, intron 2 of 4)	-21712.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	5.5	55.0	23.5	3.5	21.5	20.0
Merged-chr2-14048581-2	chr2	14048081	14049081	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001012396, intron 1 of 5)	intron (NM_001012396, intron 1 of 5)	7454.0	NM_001012396	30963.0	Mm.241205	NM_013935	ENSMUSG00000063275	Hacd1	Ptpla	3-hydroxyacyl-CoA dehydratase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-116899740-2	chr2	116899240	116900240	+	735.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040335)	promoter-TSS (NR_040335)	-412.0	NR_040336	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20980540-2	chr9	20980040	20981040	+	735.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-3747.0	NM_010333	14739.0	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-97085434-2	chr5	97084934	97085934	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198422, intron 6 of 6)	intron (NM_198422, intron 6 of 6)	26162.0	NM_001359910	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124473889-2	chr5	124473389	124474389	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030259, intron 1 of 3)	RSINE1|SINE|B4	4346.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80206179-2	chr7	80205679	80206679	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	7738.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-103045986-2	chr10	103045486	103046486	+	735.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17209.0	NM_172553	216285.0	Mm.19287	NM_172553	ENSMUSG00000036602	Alx1	AI314867|C130005I02|Cart1	ALX homeobox 1	protein-coding	0.0	2.0	0.0	0.0	0.0	0.0
Merged-chr5-35700555-2	chr5	35700055	35701055	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359895, intron 15 of 17)	intron (NM_001359895, intron 15 of 17)	-20775.0	NM_030127	78558.0	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-76647289-2	chr2	76646789	76647789	+	735.466675	f1_balb.idr|f1_c57bl6.idr	exon (NM_011871, exon 2 of 8)	exon (NM_011871, exon 2 of 8)	705.0	NM_011871	23992.0	Mm.277250	NM_011871	ENSMUSG00000002731	Prkra	AV120107|PRK|Pact|RAX|lear	protein kinase, interferon inducible double stranded RNA dependent activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-12247264-4	chr12	12246801	12247801	+	735.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-14838.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	23.5	118.5	66.5	33.0	75.5	68.0
Merged-chr16-91387019-3	chr16	91386512	91387512	+	735.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 4 of 7)	intron (NM_001347258, intron 4 of 7)	14229.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94073489-4	chr11	94073000	94074000	+	735.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025430, intron 5 of 25)	B3|SINE|B2	29295.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	14.0	33.5	25.5	11.5	31.0	23.0
Merged-chr13-30642332-4	chr13	30641863	30642863	+	735.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	-17696.0	NM_001037955	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111501863-2	chr9	111501349	111502349	+	735.375	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	62768.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	5.0	3.0	1.0	3.0	6.0	4.5
Merged-chr1-43299718-3	chr1	43299241	43300241	+	735.366638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102980.0	NM_001289533	14200.0	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90475383-2	chr7	90474883	90475883	+	735.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026734, intron 1 of 4)	intron (NM_026734, intron 1 of 4)	612.0	NM_026734	68472.0	Mm.289791	NM_026734	ENSMUSG00000030614	Tmem126b	1110001A23Rik	transmembrane protein 126B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100483665-2	chr7	100483165	100484165	+	735.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009464, intron 6 of 6)	intron (NM_009464, intron 6 of 6)	-9693.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29362555-2	chr19	29362055	29363055	+	735.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026362)	promoter-TSS (NM_026362)	-684.0	NM_026362	67759.0	Mm.275511	NM_026362	ENSMUSG00000016495	Plgrkt	1110007H22Rik|5033414D02Rik|AI852040|Plg-R(KT)|Plg-RKT	plasminogen receptor, C-terminal lysine transmembrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-63924268-3	chr11	63923766	63924766	+	735.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1982.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126565827-3	chr7	126565327	126566327	+	735.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146200, intron 2 of 20)	intron (NM_146200, intron 2 of 20)	539.0	NM_146200	56347.0	Mm.22776	NM_146200	ENSMUSG00000030738	Eif3c	110kDa|3230401O13Rik|Eif3s8|NIPIL(A3)|NipilA3|Xs|Xsl	eukaryotic translation initiation factor 3, subunit C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-104025617-3	chr5	104025096	104026096	+	735.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3800.0	NM_053262	114664.0	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105378040-3	chr4	105377525	105378525	+	735.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	220678.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21192579-3	chr10	21192068	21193068	+	735.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	5624.0	NR_152786	102636600.0	Mm.227606	NR_152786	ENSMUSG00000111005	Gm33619	-	predicted gene, 33619	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133469258-3	chr4	133468738	133469738	+	735.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10895.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	0.0	4.0	3.0	2.5	4.0	8.5
Merged-chr11-93812696-3	chr11	93812197	93813197	+	735.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73069.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	3.0	7.5	2.0	8.0	1.5	3.5
Merged-chr7-125603513-1	chr7	125603013	125604013	+	735.333313	f1_c57bl6.idr	promoter-TSS (NM_021887)	promoter-TSS (NM_021887)	84.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	14.0	44.5	17.5	6.0	2.0	2.0
Merged-chr17-27586873-3	chr17	27586376	27587376	+	735.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291046, intron 2 of 4)	PB1D9|SINE|Alu	-21149.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	12.0	59.5	44.5	6.0	24.0	14.5
Merged-chr1-152795081-4	chr1	152794616	152795616	+	735.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5037.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43861304-4	chr5	43860784	43861784	+	735.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7525.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129248571-2	chr6	129248071	129249071	+	735.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10089.0	NR_040268	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55781884-2	chr14	55781384	55782384	+	735.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001361604, exon 3 of 26)	exon (NM_001361604, exon 3 of 26)	2188.0	NM_080435	104110.0	Mm.287010	NM_080435	ENSMUSG00000022220	Adcy4	mKIAA4004	adenylate cyclase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124709496-4	chr2	124708940	124709940	+	735.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55859.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-117877940-2	chr6	117877440	117878440	+	735.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	15059.0	NM_001001792	22685.0	Mm.249661	NM_008616	ENSMUSG00000042097	Zfp239	Mok-2|Mok2|Znf239	zinc finger protein 239	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128086580-2	chr10	128086080	128087080	+	735.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_016774, intron 7 of 9)	B3A|SINE|B2	1294.0	NR_030442	751518.0		NR_030442	ENSMUSG00000104755	Mir677	Mirn677|mir-677|mmu-mir-677	microRNA 677	ncRNA	0.0	5.0	1.0	0.0	0.0	4.5
Merged-chr2-129599158-6	chr2	129598549	129599549	+	735.233337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	3587.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	17.5	31.0	21.5	9.5	28.5	18.0
Merged-chr7-145188020-3	chr7	145187519	145188519	+	735.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132643, intron 20 of 22)	intron (NR_132643, intron 20 of 22)	20100.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	0.0	1.5	0.5	0.0	0.0	0.0
Merged-chr2-34755139-4	chr2	34754682	34755682	+	735.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356441)	promoter-TSS (NM_001356441)	50.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-97020448-5	chr9	97019966	97020966	+	735.200012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2111.0	NM_145134	211949.0	Mm.491271	NM_145134	ENSMUSG00000046997	Spsb4	D030068E18Rik|SSB-4|Ssb4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding	2.5	0.0	0.5	2.5	0.0	0.5
Merged-chr2-36233100-2	chr2	36232600	36233600	+	735.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 2 of 10)	L1_Mus1|LINE|L1	2674.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80837187-2	chr7	80836706	80837706	+	735.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24902.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	16.0	70.5	50.5	19.0	57.5	44.5
Merged-chr4-43958370-2	chr4	43957870	43958870	+	735.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_027450, intron 1 of 4)	intron (NM_027450, intron 1 of 4)	668.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81016383-3	chr15	81015852	81016852	+	735.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153049, exon 10 of 13)	exon (NM_153049, exon 10 of 13)	38587.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27325992-3	chr15	27325481	27326481	+	735.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140696.0	NM_020332	11732.0	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87986393-4	chr11	87985909	87986909	+	735.087524	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001168472, exon 1 of 3)	5' UTR (NM_001168472, exon 1 of 3)	176.0	NM_001168472	68097.0	Mm.246436	NM_026556	ENSMUSG00000020483	Dynll2	1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2	dynein light chain LC8-type 2	protein-coding	4.5	20.0	6.0	3.0	8.5	11.0
Merged-chr15-85610775-4	chr15	85610298	85611298	+	735.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28977.0	NM_009528	22422.0	Mm.306946	NM_009528	ENSMUSG00000022382	Wnt7b	Wnt-7b	wingless-type MMTV integration site family, member 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45682905-4	chr7	45682414	45683414	+	735.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271578, intron 3 of 3)	intron (NM_001271578, intron 3 of 3)	-1108.0	NM_001358870	243967.0	Mm.291240	NM_001033356	ENSMUSG00000070564	Ntn5	Gm484	netrin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-58904166-3	chr19	58903657	58904657	+	735.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327998, intron 2 of 12)	intron (NM_001327998, intron 2 of 12)	7602.0	NR_037247	100526480.0		NR_037247	ENSMUSG00000092813	Mir3086	mir-3086|mmu-mir-3086	microRNA 3086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-26487158-4	chr14	26486656	26487656	+	735.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 1 of 22)	intron (NM_001310445, intron 1 of 22)	47468.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	5.0	0.0	10.5	0.5	6.5	11.0
Merged-chr5-148711635-1	chr5	148711135	148712135	+	735.0	f0_c57.idr	Intergenic	Intergenic	-30205.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138023631-1	chr4	138023131	138024131	+	735.0	f1_balb.idr	intron (NM_001355699, intron 1 of 32)	MTD|LTR|ERVL-MaLR	25806.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	19.5	18.0	16.5	23.5	32.5	16.0
Merged-chr3-86227454-1	chr3	86226954	86227954	+	735.0	f1_balb.idr	intron (NM_001077687, intron 2 of 50)	intron (NM_001077687, intron 2 of 50)	2764.0	NM_001077688	80877.0	Mm.439825	NM_030695	ENSMUSG00000028080	Lrba	C80285|D3Ertd775e|Lab300|Lba	LPS-responsive beige-like anchor	protein-coding	2.5	2.5	2.0	2.5	1.0	1.5
Merged-chr7-121450873-1	chr7	121450373	121451373	+	735.0	f0_balb.idr	intron (NM_001081327, intron 1 of 1)	intron (NM_001081327, intron 1 of 1)	58577.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101483929-2	chr15	101483429	101484429	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016879, intron 6 of 9)	intron (NM_016879, intron 6 of 9)	7374.0	NM_016879	53622.0	Mm.347934	NM_016879		Krt85	AA589597|BB007925|Hb5|Krt2-18	keratin 85	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68063409-3	chr11	68062894	68063894	+	735.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018768, intron 6 of 7)	intron (NM_018768, intron 6 of 7)	96936.0	NM_018768	55943.0	Mm.3973	NM_018768	ENSMUSG00000020903	Stx8	0610007H08Rik|1110002H11Rik|4930571E13Rik|CARB	syntaxin 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75170747-2	chr8	75170247	75171247	+	735.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-43197.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-99031579-2	chr6	99031079	99032079	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 4 of 17)	intron (NM_001197321, intron 4 of 17)	-3281.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-53969042-2	chr6	53968542	53969542	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027749, intron 2 of 12)	intron (NM_027749, intron 2 of 12)	9631.0	NM_027749	71287.0	Mm.158654	NM_027749	ENSMUSG00000052955	Cpvl	4933436L16Rik|HVLP	carboxypeptidase, vitellogenic-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16300734-1	chr7	16300234	16301234	+	735.0	f1_balb.idr	Intergenic	PB1D7|SINE|Alu	-8849.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0.0	6.0	1.0	0.0	0.5	0.0
Merged-chr19-10829677-2	chr19	10829177	10830177	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009852, intron 1 of 12)	intron (NM_009852, intron 1 of 12)	381.0	NM_001037801	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61423450-3	chr10	61422956	61423956	+	735.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013611, exon 2 of 3)	exon (NM_013611, exon 2 of 3)	5484.0	NM_013611	18119.0	Mm.57195	NM_013611	ENSMUSG00000037171	Nodal	Tg.413d	nodal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-5157343-1	chr15	5156843	5157843	+	735.0	f1_balb.idr	intron (NM_001013367, intron 1 of 8)	B1F|SINE|Alu	13482.0	NM_001355640	105787.0	Mm.207004	NM_001013367	ENSMUSG00000050697	Prkaa1	AI194361|AI450832|AL024255|AMPKalpha1|C130083N04Rik	protein kinase, AMP-activated, alpha 1 catalytic subunit	protein-coding	0.0	0.0	0.0	3.0	0.5	7.5
Merged-chr6-94506791-2	chr6	94506291	94507291	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026255, intron 1 of 9)	intron (NM_026255, intron 1 of 9)	6477.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31464485-2	chr14	31463985	31464985	+	735.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-28385.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100463131-2	chr15	100462623	100463623	+	735.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5888.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	0.0	0.0	0.0	2.0	0.0	0.0
Merged-chr4-133086323-1	chr4	133085823	133086823	+	735.0	f1_balb.idr	Intergenic	Intergenic	-44310.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	0.0	8.5	3.0	2.0	0.0	0.0
Merged-chr7-27480880-2	chr7	27480380	27481380	+	735.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-6073.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-16087160-2	chr3	16086660	16087660	+	735.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL2|LINE|L1	-80828.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127470396-2	chr7	127469896	127470896	+	735.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1218.0	NM_145589	233895.0	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136249406-2	chr4	136248870	136249870	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011542, intron 1 of 10)	intron (NM_011542, intron 1 of 10)	1413.0	NM_011542	21401.0	Mm.112	NM_011542	ENSMUSG00000001604	Tcea3	S-II|SII-K1	transcription elongation factor A (SII), 3	protein-coding	0.0	0.0	2.5	2.5	0.0	1.5
Merged-chr3-126669011-1	chr3	126668511	126669511	+	735.0	f0_c57.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	72060.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	8.5	21.0	1.5	1.5	9.5	4.5
Merged-chr18-80853534-3	chr18	80853039	80854039	+	735.0	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_015805, intron 8 of 28)	RMER6A|LTR|ERVK	80519.0	NM_001201569	50771.0	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding	8.0	24.5	25.5	7.0	18.5	18.0
Merged-chr1-176810266-2	chr1	176809766	176810766	+	735.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3142.0	NM_001099637	545389.0	Mm.269991	NM_001024722	ENSMUSG00000057335	Cep170	4933426L22Rik|A330004A13Rik|AI195353	centrosomal protein 170	protein-coding	12.5	13.0	2.0	1.0	10.5	5.5
Merged-chr19-5781168-2	chr19	5780668	5781668	+	735.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-9749.0	NR_155264	78891.0	Mm.276063	NM_023912	ENSMUSG00000024941	Scyl1	2810011O19Rik|C85140|Ntkl|mdf|mfd|p105	SCY1-like 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-124843009-2	chr4	124842509	124843509	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008636, intron 10 of 10)	ID4_|SINE|ID	7555.0	NM_001347196	68920.0	Mm.272397	NM_001142727	ENSMUSG00000078570	1110065P20Rik	C530005M16Rik	RIKEN cDNA 1110065P20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	3.0
Merged-chr18-9744627-1	chr18	9744127	9745127	+	735.0	f0_balb.idr	intron (NM_130449, intron 2 of 9)	PB1D10|SINE|Alu	36979.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	0.0	2.5	1.0	0.5	4.0	8.0
Merged-chr6-82769348-2	chr6	82768848	82769848	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 1 of 17)	B1F|SINE|Alu	5106.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	4.5	6.0	0.5	4.5	4.5	0.5
Merged-chr9-108572004-2	chr9	108571504	108572504	+	735.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_031392)	TTS (NM_031392)	2112.0	NM_026378	67789.0	Mm.458081	NM_026378	ENSMUSG00000019039	Dalrd3	6330580J24Rik|C77829|mir-425	DALR anticodon binding domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19134622-2	chr7	19134122	19135122	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175530, intron 1 of 1)	intron (NM_175530, intron 1 of 1)	14574.0	NM_026111	67369.0	Mm.234876	NM_026111	ENSMUSG00000030407	Qpctl	1810019P04Rik|BB101812|gQC	glutaminyl-peptide cyclotransferase-like	protein-coding	0.0	5.0	1.5	0.0	0.0	0.0
Merged-chr15-13088819-2	chr15	13088324	13089324	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007666, intron 2 of 11)	MER119|DNA|hAT-Charlie	84851.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	1.5	11.5	1.5	0.5	0.0	5.5
Merged-chr17-57302757-2	chr17	57302257	57303257	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 13 of 25)	intron (NM_001163816, intron 13 of 25)	23657.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93964011-2	chr10	93963511	93964511	+	735.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029764)	promoter-TSS (NR_029764)	-148.0	NR_029764	723908.0		NR_029764	ENSMUSG00000065607	Mir331	Mirn331|mmu-mir-331	microRNA 331	ncRNA	17.0	81.5	36.0	4.5	32.5	8.5
Merged-chr4-137914288-2	chr4	137913795	137914795	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 3 of 19)	intron (NM_199307, intron 3 of 19)	52058.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	0.0	2.5	2.5	0.0	0.0	3.5
Merged-chr1-90960757-2	chr1	90960257	90961257	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159725, intron 3 of 5)	intron (NM_001159725, intron 3 of 5)	6910.0	NM_001159725	19329.0	Mm.279780	NM_008998	ENSMUSG00000026304	Rab17	AW413472	RAB17, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-85377964-2	chr5	85377464	85378464	+	735.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F|LINE|L1	687619.0	NM_001345902	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-38004472-1	chr7	38003972	38004972	+	735.0	f0_balb.idr	intron (NM_011274, intron 1 of 10)	intron (NM_011274, intron 1 of 10)	15080.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	20.5	6.0	3.0	17.5	2.5	22.5
Merged-chr1-172342814-2	chr1	172342320	172343320	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	1610.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	6.0	38.0	20.5	35.5	86.5	73.0
Merged-chr8-69981866-2	chr8	69981366	69982366	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 1 of 12)	intron (NM_001286450, intron 1 of 12)	-7483.0	NM_001113346	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	0.0	0.0	0.0	0.0	6.0	0.0
Merged-chr10-111336482-1	chr10	111335982	111336982	+	735.0	f0_balb.idr	Intergenic	Intergenic	37803.0	NM_027914	71769.0	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105800138-2	chr5	105799696	105800696	+	735.0	f0_balb.idr|f1_balb.idr	intron (NM_001122768, intron 2 of 2)	intron (NM_001122768, intron 2 of 2)	-76372.0	NR_030777	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	6.0	18.0	12.5	3.0	8.0	6.5
Merged-chr7-66840285-2	chr7	66839785	66840785	+	735.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033877, exon 2 of 23)	exon (NM_001033877, exon 2 of 23)	550.0	NM_001033877	233332.0	Mm.445763	NM_001033877	ENSMUSG00000058145	Adamts17	AU023434	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4071732-2	chr7	4071232	4072232	+	735.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8528.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34516622-2	chr19	34516122	34517122	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	10852.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79718913-1	chr15	79718413	79719413	+	735.0	f1_balb.idr	intron (NM_013818, intron 10 of 11)	intron (NM_013818, intron 10 of 11)	23623.0	NM_194342	223697.0	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr8-117553443-2	chr8	117552943	117553943	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 2 of 32)	L1MB8|LINE|L1	55168.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30614641-1	chr14	30614141	30615141	+	735.0	f1_balb.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	-4331.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	3.0	21.0	10.5	1.0	23.0	6.0
Merged-chr4-145236336-2	chr4	145235836	145236836	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	10534.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-30467449-2	chr15	30466949	30467949	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 2 of 21)	intron (NM_001355502, intron 2 of 21)	294856.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32449004-2	chr2	32448504	32449504	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146118, intron 1 of 10)	B1_Mur2|SINE|Alu	-1453.0	NM_194335	71254.0	Mm.102341	NM_194335	ENSMUSG00000039164	Naif1	2310007O20Rik|4933440H19Rik	nuclear apoptosis inducing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50893273-1	chr14	50892773	50893773	+	735.0	f1_c57bl6.idr	promoter-TSS (NM_001166651)	promoter-TSS (NM_001166651)	-18.0	NM_001166651	546611.0	Mm.390692	NM_001166651	ENSMUSG00000090799	Klhl33	EG546611	kelch-like 33	protein-coding	2.0	1.5	2.5	5.5	4.0	5.0
Merged-chr9-107558108-1	chr9	107557608	107558608	+	735.0	f1_c57bl6.idr	intron (NM_001243748, intron 4 of 5)	intron (NM_001243748, intron 4 of 5)	3525.0	NM_019713	56289.0	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	7.5	10.0	5.5	0.0	3.0	17.0
Merged-chr1-85650021-3	chr1	85649523	85650523	+	735.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313712)	promoter-TSS (NM_001313712)	35.0	NM_001313714	20684.0	Mm.290906	NM_013673	ENSMUSG00000026222	Sp100	A430075G10Rik	nuclear antigen Sp100	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-51007095-4	chr9	51006596	51007596	+	734.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178710, intron 1 of 15)	intron (NM_178710, intron 1 of 15)	1977.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-7870580-3	chr17	7870005	7871005	+	734.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55495.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121796298-3	chr10	121795833	121796833	+	734.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081037, intron 18 of 21)	intron (NM_001081037, intron 18 of 21)	56403.0	NM_173022	270802.0	Mm.209172	NM_173022	ENSMUSG00000053684	BC048403	E030027L10	cDNA sequence BC048403	protein-coding	0.0	3.0	2.0	1.0	0.0	4.5
Merged-chr7-139476843-2	chr7	139476343	139477343	+	734.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_183144, intron 2 of 15)	intron (NM_183144, intron 2 of 15)	76349.0	NM_001355162	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111626097-4	chr8	111625578	111626578	+	734.845825	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001168623)	TTS (NM_001168623)	4244.0	NM_027570	52815.0	Mm.27589	NM_027570	ENSMUSG00000031958	Ldhd	4733401P21Rik|D8Bwg1320e	lactate dehydrogenase D	protein-coding	0.0	9.0	1.0	2.0	3.0	0.0
Merged-chr14-73225436-2	chr14	73224936	73225936	+	734.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 17 of 26)	intron (NM_009029, intron 17 of 26)	-12455.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87597334-2	chr6	87596834	87597834	+	734.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	-6591.0	NM_021381	58182.0	Mm.333226	NM_021381	ENSMUSG00000049409	Prokr1	EG-VEGFR1|Gpr73|Pk-r1|Pkr1	prokineticin receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95694740-2	chr9	95694240	95695240	+	734.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_029620, exon 8 of 9)	exon (NM_029620, exon 8 of 9)	55618.0	NM_001311123	22063.0	Mm.149633	NM_011643	ENSMUSG00000032839	Trpc1	Mtrp1|Trp1|Trrp1	transient receptor potential cation channel, subfamily C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57100158-2	chr17	57099658	57100658	+	734.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_033508, intron 3 of 3)	intron (NR_033508, intron 3 of 3)	-5227.0	NM_009404	21950.0	Mm.41171	NM_009404	ENSMUSG00000035678	Tnfsf9	4-1BB-L|4-1BBL|AI848817|Cd137l|Ly63l	tumor necrosis factor (ligand) superfamily, member 9	protein-coding	0.0	1.5	1.5	0.0	0.0	0.0
Merged-chr12-87442763-3	chr12	87442264	87443264	+	734.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001013372)	TTS (NM_001013372)	1075.0	NM_001102565	211064.0	Mm.486235	NM_001102565	ENSMUSG00000079036	Alkbh1	2700073G19Rik|Abh|Alkbh|alkB|hABH	alkB homolog 1, histone H2A dioxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32947315-3	chr19	32946816	32947816	+	734.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	189739.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-59232120-3	chr7	59231648	59232648	+	734.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033962, intron 1 of 10)	intron (NM_001033962, intron 1 of 10)	3398.0	NM_173010	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	0.5	8.0	1.5	0.0	8.5	5.0
Merged-chr15-13474465-3	chr15	13473965	13474965	+	734.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-300790.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128722900-2	chr4	128722400	128723400	+	734.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 7 of 14)	intron (NM_018774, intron 7 of 14)	-4671.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-44116194-3	chr17	44115711	44116711	+	734.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-10402.0	NM_001357996	224794.0	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	0.0	8.0	2.5	3.5	6.0	11.5
Merged-chr8-4676691-2	chr8	4676191	4677191	+	734.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63521.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-129472098-3	chr3	129471590	129472590	+	734.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38417.0	NR_033594	435755.0	Mm.430561	NR_033594	ENSMUSG00000105712	Pou5f1-rs4	EG435755|Gm5712|Oct4P1|Otf3-rs4|Otf3d	POU domain, class 5, transcription factor 1, related sequence 4	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-78815681-3	chr14	78815196	78816196	+	734.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33482.0	NM_027906	219189.0	Mm.159651	NM_027906	ENSMUSG00000058997	Vwa8	1300010F03Rik|4932416F07Rik|AI957255|Kiaa0564|mKIAA0564	von Willebrand factor A domain containing 8	protein-coding	1.0	1.0	1.5	0.0	4.5	2.0
Merged-chr9-72030701-4	chr9	72030190	72031190	+	734.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011544, intron 3 of 20)	intron (NM_011544, intron 3 of 20)	80511.0	NM_001253862	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	1.0	15.0	7.5	8.0	0.5	4.5
Merged-chr13-24487939-2	chr13	24487439	24488439	+	734.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72817.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119813886-4	chr8	119813378	119814378	+	734.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 3 of 3)	intron (NM_028071, intron 3 of 3)	26701.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66784068-2	chr15	66783568	66784568	+	734.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029841, intron 6 of 7)	intron (NM_001029841, intron 6 of 7)	47761.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32909915-3	chr12	32909418	32910418	+	734.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	43871.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-12222188-2	chr12	12221688	12222688	+	734.666687	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-39951.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	9.5	7.0	7.5	6.5	2.5	8.5
Merged-chr4-144980224-3	chr4	144979696	144980696	+	734.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 68 of 69)	intron (NM_001276465, intron 68 of 69)	87059.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145786460-3	chr2	145785952	145786952	+	734.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	336.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-3475105-3	chr6	3474620	3475620	+	734.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178899, intron 4 of 9)	intron (NM_178899, intron 4 of 9)	19378.0	NM_178899	101202.0	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	0.0	0.0	5.0	1.5	2.5	0.5
Merged-chr15-50404036-3	chr15	50403463	50404463	+	734.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	485086.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	3.0	14.0	0.0	3.0	0.0	8.5
Merged-chr19-47395058-3	chr19	47394585	47395585	+	734.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 3 of 14)	B1_Mur4|SINE|Alu	69326.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	3.5	4.0	16.5	6.0	0.0	10.5
Merged-chr12-69359438-2	chr12	69358938	69359938	+	734.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	-2262.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	1.0	11.0	0.5	0.5	0.0	0.0
Merged-chr7-81850906-3	chr7	81850414	81851414	+	734.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-8087.0	NR_111910	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	34.0	79.0	44.5	32.0	62.0	74.0
Merged-chr13-30888682-2	chr13	30888182	30889182	+	734.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_025588, intron 11 of 27)	intron (NM_025588, intron 11 of 27)	59079.0	NM_153072	210554.0	Mm.450571	NM_153072	ENSMUSG00000076430	Hus1b	-	HUS1 checkpoint clamp component B	protein-coding	0.0	2.0	0.0	0.5	0.0	0.0
Merged-chr9-44798444-2	chr9	44797944	44798944	+	734.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_138951)	TTS (NM_138951)	803.0	NM_001357385	71687.0	Mm.41409	NM_027865	ENSMUSG00000002032	Tmem25	0610039J01Rik|AI429491	transmembrane protein 25	protein-coding	0.0	2.5	1.0	0.0	2.5	0.0
Merged-chr5-114612359-2	chr5	114611859	114612859	+	734.625	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001004180, exon 3 of 3)	3' UTR (NM_001004180, exon 3 of 3)	44108.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-81697214-2	chr18	81696714	81697714	+	734.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	294866.0	NR_039589	100628596.0		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124672447-6	chr6	124671993	124672993	+	734.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149320, intron 1 of 11)	intron (NR_149320, intron 1 of 11)	9389.0	NM_145130	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45691066-5	chr14	45690548	45691548	+	734.616638	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32905.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	1.0	14.5	22.0	3.5	7.5	16.0
Merged-chr4-133139173-3	chr4	133138681	133139681	+	734.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	8548.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	70.0	136.0	109.0	63.0	118.5	64.5
Merged-chr10-67052607-3	chr10	67052130	67053130	+	734.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	44358.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-75063502-2	chr4	75063002	75064002	+	734.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	214790.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25485078-2	chr14	25484637	25485637	+	734.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	URR1B|DNA|hAT-Charlie	25952.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-65069468-2	chr14	65068968	65069968	+	734.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360385, intron 2 of 5)	intron (NM_001360385, intron 2 of 5)	28638.0	NM_018788	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	1.0	0.0	2.5	4.5	21.5	1.5
Merged-chr15-34094494-2	chr15	34093994	34094994	+	734.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357925, intron 1 of 10)	B1_Mus1|SINE|Alu	11775.0	NM_001357925	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32920434-4	chr12	32919933	32920933	+	734.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_044986, intron 5 of 5)	intron (NR_044986, intron 5 of 5)	33356.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	2.5	0.0	5.0	0.0	0.0	0.0
Merged-chr4-138866686-2	chr4	138866168	138867168	+	734.56665	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3199.0	NM_001122954	18784.0	Mm.486532	NM_011110	ENSMUSG00000041193	Pla2g5	PLA2|sPLA2	phospholipase A2, group V	protein-coding	0.5	6.5	2.5	0.5	8.5	1.0
Merged-chr16-25963994-3	chr16	25963453	25964453	+	734.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173379, intron 14 of 14)	MER5B|DNA|hAT-Charlie	141831.0	NM_173379	210530.0	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101317971-3	chr15	101317466	101318466	+	734.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	24754.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-186676262-4	chr1	186675681	186676681	+	734.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009367, intron 1 of 6)	intron (NM_009367, intron 1 of 6)	29808.0	NM_009367	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-33995431-4	chr13	33994929	33995929	+	734.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243192, intron 2 of 7)	intron (NM_001243192, intron 2 of 7)	-6934.0	NM_001359997	19766.0	Mm.374799	NM_009068	ENSMUSG00000021408	Ripk1	D330015H01Rik|RIP|RIP-1|Rinp|Rip1	receptor (TNFRSF)-interacting serine-threonine kinase 1	protein-coding	0.0	1.0	2.0	0.0	1.0	2.0
Merged-chr9-99580859-4	chr9	99580345	99581345	+	734.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031403, intron 5 of 7)	B2_Mm2|SINE|B2	5046.0	NM_031403	83703.0	Mm.31324	NM_031403	ENSMUSG00000032469	Dbr1	AW018415	debranching RNA lariats 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100107049-2	chr12	100106549	100107549	+	734.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5282.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128545990-2	chr10	128545490	128546490	+	734.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134003, intron 2 of 2)	intron (NM_134003, intron 2 of 2)	1754.0	NM_134003	103284.0	Mm.68289	NM_134003	ENSMUSG00000039810	Zc3h10	AI790326	zinc finger CCCH type containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-42398078-2	chr6	42397578	42398578	+	734.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-2160.0	NM_001001452	387514.0	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90297434-2	chr16	90296934	90297934	+	734.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-12931.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-73538063-2	chr18	73537563	73538563	+	734.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34642.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-59918284-2	chr19	59917784	59918784	+	734.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033172, intron 3 of 5)	intron (NM_001033172, intron 3 of 5)	25080.0	NM_001033172	74998.0	Mm.24167	NM_001033172	ENSMUSG00000040022	Rab11fip2	4930470G04Rik|A830046J09Rik|AW558126|Nrip11	RAB11 family interacting protein 2 (class I)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-133493696-2	chr1	133493196	133494196	+	734.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69484.0	NM_011439	20668.0	Mm.8575	NM_011439	ENSMUSG00000070643	Sox13	AA407916|AW259412|AW540933|Sox-13	SRY (sex determining region Y)-box 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121660123-1	chr5	121659623	121660623	+	734.5	f0_balb.idr	promoter-TSS (NM_028227)	promoter-TSS (NM_028227)	387.0	NM_028037	71985.0	Mm.45423	NM_028037	ENSMUSG00000029456	Acad10	2410021P16Rik	acyl-Coenzyme A dehydrogenase family, member 10	protein-coding	2.0	1.5	9.0	0.0	0.0	1.5
Merged-chr2-71032395-2	chr2	71031895	71032895	+	734.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 1 of 9)	intron (NM_145524, intron 1 of 9)	-14021.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-68612079-2	chr14	68611579	68612579	+	734.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_102399, intron 17 of 21)	intron (NR_102399, intron 17 of 21)	-30007.0	NM_021475	58860.0	Mm.36742	NM_021475	ENSMUSG00000022057	Adamdec1	2210414L24Rik|AI574231|Dcsn	ADAM-like, decysin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141858238-2	chr4	141857689	141858689	+	734.5	f0_balb.idr|f1_c57bl6.idr	TTS (NM_025994)	TTS (NM_025994)	-11830.0	NM_001033875	76701.0	Mm.489680	NM_001033875	ENSMUSG00000062478	Ctrc	1810044E12Rik	chymotrypsin C (caldecrin)	protein-coding	68.5	229.0	146.0	76.0	176.0	98.0
Merged-chr9-32424200-2	chr9	32423700	32424700	+	734.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008026, exon 9 of 9)	exon (NM_008026, exon 9 of 9)	30215.0	NM_001168354	56379.0	Mm.390168	NM_019659	ENSMUSG00000041248	Kcnj1	Kir1.1|ROMK|Romk2	potassium inwardly-rectifying channel, subfamily J, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63474708-2	chr4	63474208	63475208	+	734.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008791, intron 1 of 12)	intron (NM_001008791, intron 1 of 12)	21283.0	NM_001008793	73750.0	Mm.300397	NM_028640	ENSMUSG00000039137	Whrn	1110035G07Rik|AW122018|AW742671|C430046P22Rik|Dfnb31|Ush2d|wi	whirlin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41987192-4	chr19	41986706	41987706	+	734.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	5443.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	6.5	5.5	4.0	1.5	7.5	3.5
Merged-chr11-116147080-3	chr11	116146610	116147610	+	734.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172571, intron 24 of 30)	intron (NM_172571, intron 24 of 30)	-8242.0	NM_024177	60441.0	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	5.5	35.5	19.5	21.5	13.0	32.0
Merged-chr15-25321392-2	chr15	25320892	25321892	+	734.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92372.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106957845-1	chr1	106957345	106958345	+	734.5	f0_balb.idr	TTS (NM_001199213)	TTS (NM_001199213)	18888.0	NM_001199213	71869.0	Mm.321740	NM_027971	ENSMUSG00000059956	Serpinb12	2300003F07Rik|4833409F13Rik	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 12	protein-coding	1.5	0.0	0.0	0.0	0.0	1.0
Merged-chr15-86251695-2	chr15	86251195	86252195	+	734.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 4 of 12)	intron (NM_145476, intron 4 of 12)	-25980.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27301490-2	chr2	27300990	27301990	+	734.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 4 of 29)	intron (NR_133905, intron 4 of 29)	-54187.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-133492112-2	chr2	133491612	133492612	+	734.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60047.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6547648-2	chr15	6547148	6548148	+	734.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32199.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111935311-2	chr13	111934811	111935811	+	734.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67375.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114764585-2	chr11	114764085	114765085	+	734.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102615)	promoter-TSS (NM_001102615)	-804.0	NM_001102615	286942.0	Mm.308713	NM_001102615	ENSMUSG00000010021	Kif19a	Kif19	kinesin family member 19A	protein-coding	1.5	2.0	3.0	0.0	0.0	0.0
Merged-chr5-122393505-2	chr5	122393005	122394005	+	734.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019824, intron 1 of 6)	intron (NM_019824, intron 1 of 6)	1627.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74821582-2	chr11	74821060	74822060	+	734.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9364.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	2.5	6.5	2.0	2.5	4.5	3.0
Merged-chr5-142912987-4	chr5	142912454	142913454	+	734.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6200.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102742340-2	chr12	102741840	102742840	+	734.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_022323, exon 2 of 2)	exon (NM_022323, exon 2 of 2)	1321.0	NM_001142937	64113.0	Mm.291222	NM_022323	ENSMUSG00000096458	Moap1	AA987038|Map-1|Pnma4	modulator of apoptosis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145075851-1	chr6	145075351	145076351	+	734.5	f0_balb.idr	intron (NM_007532, intron 1 of 10)	intron (NM_007532, intron 1 of 10)	306.0	NM_007532	12035.0	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	4.0	10.5	0.5	11.0	10.5	0.5
Merged-chr11-120511860-2	chr11	120511360	120512360	+	734.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	-18867.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21703208-2	chr5	21702708	21703708	+	734.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1586.0	NM_001359965	242864.0	Mm.153292	NM_178728	ENSMUSG00000044968	Napepld	A530089G06|Mbldc1|NAPE-PLD	N-acyl phosphatidylethanolamine phospholipase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114614321-2	chr6	114613821	114614821	+	734.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	-28776.0	NM_028835	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25524900-2	chr14	25524400	25525400	+	734.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 2 of 23)	intron (NM_183208, intron 2 of 23)	-9539.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-10329552-2	chr11	10329052	10330052	+	734.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-784464.0	NM_177033	319922.0	Mm.337851	NM_177033	ENSMUSG00000050830	Vwc2	A930041G11Rik|G11|PSST739|UNQ739|cradin	von Willebrand factor C domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80259595-2	chr18	80259095	80260095	+	734.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025861, intron 2 of 5)	intron (NM_025861, intron 2 of 5)	3289.0	NM_025861	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-53929249-2	chr5	53928749	53929749	+	734.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69274.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80171126-4	chr10	80170645	80171645	+	734.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007705, exon 7 of 7)	3' UTR (NM_007705, exon 7 of 7)	-1799.0	NM_027207	69770.0	Mm.302754	NM_027207	ENSMUSG00000035595	1600002K03Rik	-	RIKEN cDNA 1600002K03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85522019-2	chr12	85521519	85522519	+	734.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48129.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-67717387-2	chr14	67716887	67717887	+	734.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111028, intron 1 of 11)	intron (NM_001111028, intron 1 of 11)	1289.0	NM_001285933	105440.0	Mm.6720	NM_134073	ENSMUSG00000034327	Kctd9	-	potassium channel tetramerisation domain containing 9	protein-coding	0.0	1.5	0.0	0.0	0.0	2.0
Merged-chr2-116980697-3	chr2	116980203	116981203	+	734.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80551.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-79461090-2	chr14	79460590	79461590	+	734.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018765, exon 10 of 10)	3' UTR (NM_018765, exon 10 of 10)	9255.0	NM_001034882	432879.0	Mm.308666	NM_001034882	ENSMUSG00000075502	Kbtbd6	EG432879|Gm5465|Zbtbd6	kelch repeat and BTB (POZ) domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-90598667-2	chr6	90598167	90599167	+	734.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356412, intron 22 of 22)	intron (NM_001356412, intron 22 of 22)	-6213.0	NM_027868	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54072421-2	chr11	54071921	54072921	+	734.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3404.0	NM_019417	30794.0	Mm.21830	NM_019417	ENSMUSG00000020388	Pdlim4	Ril	PDZ and LIM domain 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12483791-3	chr19	12483303	12484303	+	734.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172442, intron 4 of 8)	intron (NM_172442, intron 4 of 8)	18193.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	0.0	13.0	5.0	1.0	3.5	6.0
Merged-chr16-31897088-2	chr16	31896588	31897588	+	734.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013900, intron 15 of 15)	intron (NM_013900, intron 15 of 15)	18278.0	NM_013900	30060.0	Mm.30988	NM_013900	ENSMUSG00000022780	Meltf	CD228|MTf|Mfi2	melanotransferrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87616947-2	chr3	87616447	87617447	+	734.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001003912)	promoter-TSS (NM_001003912)	-612.0	NM_001360197	213498.0	Mm.287267	NM_001003912	ENSMUSG00000041977	Arhgef11	PDZ-RhoGEF|Prg|RhoGEF|mKIAA0380	Rho guanine nucleotide exchange factor (GEF) 11	protein-coding	39.0	48.5	46.5	30.5	44.5	56.0
Merged-chr11-74858295-2	chr11	74857795	74858795	+	734.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_197943, intron 14 of 22)	intron (NM_197943, intron 14 of 22)	9899.0	NR_105891	102465558.0		NR_105891	ENSMUSG00000098317	Mir6926	Gm27949|mmu-mir-6926	microRNA 6926	ncRNA	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr10-39909059-1	chr10	39908559	39909559	+	734.5	f0_balb.idr	Intergenic	Intergenic	-9821.0	NR_033628	213332.0	Mm.484359	NR_033628		Mfsd4b4	AA474331	major facilitator superfamily domain containing 4B4	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31148373-2	chr14	31147873	31148873	+	734.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_138672, exon 38 of 69)	exon (NM_138672, exon 38 of 69)	13520.0	NM_027289	70021.0	Mm.261681	NM_027289	ENSMUSG00000071547	Nt5dc2	2510015F01Rik	5'-nucleotidase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-109913376-4	chr2	109912848	109913848	+	734.488098	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033473)	promoter-TSS (NR_033473)	-29.0	NR_033473	100038454.0	Mm.365649	NR_033473	ENSMUSG00000063751	Platr8	Gm13939	pluripotency associated transcript 8	ncRNA	7.5	2.5	6.5	11.0	6.0	7.0
Merged-chr3-57667203-4	chr3	57666722	57667722	+	734.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033349)	TTS (NM_001033349)	-15538.0	NM_175095	52245.0	Mm.21901	NM_175095	ENSMUSG00000036513	Commd2	1190017G07Rik|AI047739|D3Ertd176e|HSPC042	COMM domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25711059-6	chr7	25710597	25711597	+	734.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028771)	TTS (NM_028771)	7956.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-77388391-3	chr8	77387881	77388881	+	734.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 11 of 22)	intron (NM_030113, intron 11 of 22)	-128675.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-73134023-3	chr5	73133533	73134533	+	734.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028194, intron 5 of 62)	intron (NM_028194, intron 5 of 62)	122585.0	NM_028194	72313.0	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	4.0	10.5	4.0	1.5	6.0	1.0
Merged-chr3-146120170-3	chr3	146119711	146120711	+	734.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1580.0	NM_134160	171166.0	Mm.114683	NM_134160	ENSMUSG00000036853	Mcoln3	6720490O21Rik|TRPML3|Va	mucolipin 3	protein-coding	3.5	0.0	1.5	6.0	3.5	1.5
Merged-chr11-120570696-2	chr11	120570193	120571193	+	734.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011032, intron 2 of 10)	B1_Mus1|SINE|Alu	2560.0	NM_011032	18453.0	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	10.0	40.0	19.5	16.5	43.5	30.0
Merged-chr7-25815460-2	chr7	25814960	25815960	+	734.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028775, intron 1 of 8)	intron (NM_028775, intron 1 of 8)	1070.0	NM_028775	74134.0	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88870957-2	chr15	88870457	88871457	+	734.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8763.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95839141-3	chr16	95838620	95839620	+	734.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040485, intron 3 of 3)	intron (NR_040485, intron 3 of 3)	59593.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-41319218-3	chr8	41318746	41319746	+	734.388855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023662, intron 29 of 37)	intron (NM_023662, intron 29 of 37)	55451.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	4.0	1.0	3.5	2.0	1.0	0.0
Merged-chr10-78370498-3	chr10	78370004	78371004	+	734.388855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-18804.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96026839-3	chr3	96026308	96027308	+	734.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013841, intron 13 of 14)	RMER6A|LTR|ERVK	-30969.0	NM_023320	67220.0	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	6.5	3.5	2.5	2.5	13.0	14.5
Merged-chr17-74508818-4	chr17	74508312	74509312	+	734.354187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	19319.0	NM_026417	67864.0	Mm.41891	NM_026417	ENSMUSG00000024072	Yipf4	2310034L04Rik	Yip1 domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34338034-2	chr5	34337534	34338534	+	734.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304270, intron 1 of 7)	intron (NM_001304270, intron 1 of 7)	1102.0	NM_001304270	19822.0	Mm.21281	NM_011278	ENSMUSG00000029110	Rnf4	AU018689|Gtrgeo8|SNURF	ring finger protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32087879-2	chr19	32087387	32088387	+	734.333374	f0_balb.idr|f1_balb.idr	intron (NM_018830, intron 2 of 23)	L1_Mur3|LINE|L1	15253.0	NM_018830	54447.0	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	10.0	12.5	5.0	8.5	9.5	11.0
Merged-chr18-6480021-2	chr18	6479542	6480542	+	734.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007935, intron 1 of 13)	intron (NM_007935, intron 1 of 13)	10604.0	NR_035446	100316773.0		NR_035446	ENSMUSG00000084514	Mir1893	Mirn1893|mmu-mir-1893	microRNA 1893	ncRNA	0.5	17.5	2.0	11.0	10.0	16.0
Merged-chr8-106556353-4	chr8	106555858	106556858	+	734.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007665, exon 16 of 16)	3' UTR (NM_007665, exon 16 of 16)	-30785.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-75699308-3	chr3	75698806	75699806	+	734.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43575.0	NR_040539	69193.0	Mm.374088	NR_040539	ENSMUSG00000099370	Platr10	2410007B07Rik	pluripotency associated transcript 10	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53255044-2	chr11	53254544	53255544	+	734.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45435.0	NM_008300	15525.0	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-57717289-3	chr18	57716796	57717796	+	734.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029290, intron 6 of 6)	MLTR14|LTR|ERV1	62699.0	NR_152224	100503033.0	Mm.381112	NR_152224		Gm19519	-	predicted gene, 19519	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51985765-3	chr14	51985252	51986252	+	734.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045728)	TTS (NR_045728)	919.0	NM_198249	268739.0	Mm.9239	NM_198249	ENSMUSG00000004562	Arhgef40	E130112L23Rik|Gm669|Solo	Rho guanine nucleotide exchange factor (GEF) 40	protein-coding	0.0	5.5	1.0	0.0	4.0	0.0
Merged-chr5-45668491-2	chr5	45667991	45668991	+	734.333313	f1_balb.idr|f1_c57bl6.idr	TTS (NR_073433)	TTS (NR_073433)	1217.0	NR_073433	69788.0	Mm.381492	NR_073433	ENSMUSG00000104986	1600023N17Rik	AV119442	RIKEN cDNA 1600023N17 gene	ncRNA	7.0	0.0	0.0	9.0	0.0	0.0
Merged-chr1-4768528-4	chr1	4768039	4769039	+	734.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17187.0	NM_001177658	27395.0	Mm.182927	NM_025300	ENSMUSG00000033845	Mrpl15	HSPC145|MRP-L7|Rpml7	mitochondrial ribosomal protein L15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109564760-3	chr4	109564238	109565238	+	734.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33441.0	NM_026291	67646.0	Mm.45820	NM_026291	ENSMUSG00000060491	4930522H14Rik	1700007J23Rik	RIKEN cDNA 4930522H14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167423143-2	chr2	167422643	167423643	+	734.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304542, intron 1 of 15)	ID_B1|SINE|B4	1433.0	NM_001304542	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114360774-2	chr7	114360255	114361255	+	734.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_029438, intron 2 of 4)	ORR1D2|LTR|ERVL-MaLR	54406.0	NR_029437	71045.0	Mm.235682	NR_029437	ENSMUSG00000087475	4933406I18Rik	4933403D24Rik	RIKEN cDNA 4933406I18 gene	ncRNA	3.0	13.5	3.5	3.5	2.5	2.0
Merged-chr5-67778233-4	chr5	67777746	67778746	+	734.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284345, intron 7 of 36)	intron (NM_001284345, intron 7 of 36)	69185.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	8.0	0.5	0.5	7.5	3.0	2.5
Merged-chr1-75423162-2	chr1	75422662	75423662	+	734.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_007463, exon 30 of 41)	exon (NM_007463, exon 30 of 41)	-12774.0	NM_133708	69080.0	Mm.23951	NM_133708	ENSMUSG00000033021	Gmppa	1810012N01Rik	GDP-mannose pyrophosphorylase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46733507-2	chr8	46733007	46734007	+	734.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_045750, intron 2 of 2)	intron (NR_045750, intron 2 of 2)	6008.0	NR_045750	100503498.0	Mm.187358	NR_045750	ENSMUSG00000097534	Gm16675	-	predicted gene, 16675	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34929747-4	chr8	34929238	34930238	+	734.241699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 2 of 26)	MTD|LTR|ERVL-MaLR	35952.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	1.0	0.5	2.0	13.0	4.0	7.5
Merged-chr1-155084635-4	chr1	155084136	155085136	+	734.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1372.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109360609-2	chr11	109360109	109361109	+	734.205322	f1_balb.idr|f1_c57bl6.idr	intron (NR_038097, intron 1 of 1)	L1MB5|LINE|L1	-2185.0	NM_010303	14674.0	Mm.193925	NM_010303	ENSMUSG00000020611	Gna13	AU024132|AU043124|Galpha13	guanine nucleotide binding protein, alpha 13	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr14-52196409-2	chr14	52195947	52196947	+	734.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_033618, intron 1 of 25)	intron (NM_033618, intron 1 of 25)	792.0	NM_033618	114741.0	Mm.21662	NM_033618	ENSMUSG00000035726	Supt16	Cdc68|Fact140|Spt16|Supt16h	suppressor of Ty 16	protein-coding	10.0	13.0	12.5	4.5	23.0	10.0
Merged-chr10-85103093-2	chr10	85102593	85103593	+	734.200012	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010214)	promoter-TSS (NM_010214)	466.0	NM_001013028	103266.0	Mm.335025	NM_001013028	ENSMUSG00000060935	Tmem263	AI597468	transmembrane protein 263	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-18049350-4	chr10	18048807	18049807	+	734.1875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Ala-GCY_|tRNA|tRNA	-6633.0	NM_009048	19707.0	Mm.4479	NM_009048	ENSMUSG00000019854	Reps1	BB161292	RalBP1 associated Eps domain containing protein	protein-coding	3.5	0.0	7.0	5.5	27.0	4.5
Merged-chr2-122773035-3	chr2	122772524	122773524	+	734.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027888, intron 1 of 9)	intron (NR_027888, intron 1 of 9)	1311.0	NR_027888	59010.0	Mm.28986	NM_021507	ENSMUSG00000005803	Sqor	0610039J17Rik|4930557M22Rik|Sqrdl	sulfide quinone oxidoreductase	protein-coding	6.5	14.5	19.5	14.0	9.0	9.5
Merged-chr13-93939687-3	chr13	93939190	93940190	+	734.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009712, intron 7 of 7)	intron (NM_009712, intron 7 of 7)	-118106.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79618736-3	chr2	79618243	79619243	+	734.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16682.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	2.0	10.0	6.0	13.5	12.5	19.5
Merged-chr9-95565497-3	chr9	95565028	95566028	+	734.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5711.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	41.0	36.0	29.5	41.0	36.0	30.0
Merged-chr9-123638957-2	chr9	123638457	123639457	+	734.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_139142, intron 9 of 10)	intron (NM_139142, intron 9 of 10)	-6392.0	NM_011731	22599.0	Mm.41963	NM_011731	ENSMUSG00000025243	Slc6a20b	AA986306|Sit1|Slc6a20|XT3|Xtrp3	solute carrier family 6 (neurotransmitter transporter), member 20B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-28952190-2	chr13	28951690	28952690	+	734.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_009238, exon 1 of 1)	exon (NM_009238, exon 1 of 1)	1509.0	NM_009238	20677.0	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102531206-3	chr2	102530723	102531723	+	734.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCC)n|Simple_repeat|Simple_repeat	-18798.0	NM_173749	210622.0	Mm.28649	NM_173749	ENSMUSG00000027188	Pamr1	5930437L24|E430002G05Rik|Ramp	peptidase domain containing associated with muscle regeneration 1	protein-coding	7.5	0.0	4.5	4.5	3.0	4.5
Merged-chr5-112288527-2	chr5	112288027	112289027	+	734.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	11836.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0.0	3.0	6.0	0.5	5.5	19.5
Merged-chr14-75788019-2	chr14	75787519	75788519	+	734.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026232)	promoter-TSS (NM_026232)	-982.0	NM_026232	67554.0	Mm.46067	NM_026232	ENSMUSG00000022003	Slc25a30	4933433D23Rik|AV025504|AV221431|AW319655|KMCP1	solute carrier family 25, member 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173401616-4	chr1	173401106	173402106	+	734.145813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18998.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	5.0	10.0	8.5	15.0	21.0	2.5
Merged-chr3-99253981-4	chr3	99253474	99254474	+	734.137512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009323, exon 1 of 8)	exon (NM_009323, exon 1 of 8)	214.0	NM_009323	21384.0	Mm.88761	NM_009323	ENSMUSG00000027868	Tbx15	Tbx14|Tbx8|de	T-box 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-48655788-4	chr13	48655247	48656247	+	734.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7289.0	NM_007526	12022.0	Mm.42241	NM_007526	ENSMUSG00000021381	Barx1	-	BarH-like homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26300993-3	chr2	26300454	26301454	+	734.122253	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6397.0	NM_177841	329366.0	Mm.77712	NM_177841	ENSMUSG00000048038	Ccdc187	4932418E24Rik	coiled-coil domain containing 187	protein-coding	1.5	1.5	0.0	1.5	1.5	0.0
Merged-chr8-117404060-3	chr8	117403564	117404564	+	734.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 3 of 20)	intron (NM_028941, intron 3 of 20)	-48959.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-81957218-3	chr6	81956718	81957718	+	734.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026490)	TTS (NM_026490)	8731.0	NM_026490	56284.0	Mm.276293	NM_026490	ENSMUSG00000030045	Mrpl19	9030416F12Rik|9130412E02Rik|D6Ertd157e|MRP-L15|RLX1|Rpml15	mitochondrial ribosomal protein L19	protein-coding	5.5	2.0	7.0	5.0	33.5	9.5
Merged-chr4-117835060-2	chr4	117834560	117835560	+	734.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008135)	promoter-TSS (NM_008135)	-198.0	NM_008135	14664.0	Mm.244549	NM_008135	ENSMUSG00000028542	Slc6a9	Glyt-1|Glyt1	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	protein-coding	0.5	0.0	0.5	0.0	0.5	0.0
Merged-chr10-43220665-2	chr10	43220165	43221165	+	734.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168289)	promoter-TSS (NM_001168289)	-821.0	NM_027772	71365.0	Mm.490430	NM_027772	ENSMUSG00000038240	Pdss2	5430420P03Rik|Gm60|Plmp|kd|mDLP1	prenyl (solanesyl) diphosphate synthase, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-143384022-2	chr4	143383522	143384522	+	734.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10419.0	NM_031377	83491.0	Mm.190607	NM_031377	ENSMUSG00000041805	Pramel1	-	preferentially expressed antigen in melanoma-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83034153-3	chr15	83033610	83034610	+	734.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271411)	promoter-TSS (NM_001271411)	-713.0	NM_001271411	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	1.0	2.0	3.5	8.5	5.0	7.5
Merged-chr5-143375328-2	chr5	143374828	143375828	+	734.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001159321, exon 6 of 22)	exon (NM_001159321, exon 6 of 22)	5236.0	NM_001347529	170935.0	Mm.197460	NM_133355	ENSMUSG00000010825	Grid2ip	-	glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-19494040-2	chr11	19493541	19494541	+	734.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	428766.0	NR_046037	74059.0	Mm.292321	NR_046037	ENSMUSG00000086025	4933406G16Rik	-	RIKEN cDNA 4933406G16 gene	ncRNA	8.5	24.0	10.0	10.0	6.5	20.0
Merged-chr19-5611462-2	chr19	5610962	5611962	+	734.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-1368.0	NM_178637	81601.0	Mm.228930	NM_178637	ENSMUSG00000024926	Kat5	AI839539|CPLA2|Htatip|Htatip1|PLIP|Tip55|Tip60	K(lysine) acetyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153089065-1	chr2	153088565	153089565	+	734.0	f1_balb.idr	Intergenic	B3|SINE|B2	-19403.0	NM_001172117	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	15.0	33.5	20.5	12.5	8.0	12.5
Merged-chr8-41021575-1	chr8	41021075	41022075	+	734.0	f1_c57bl6.idr	intron (NR_015457, intron 2 of 2)	B4A|SINE|B4	4107.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	17.0	54.5	29.5	31.0	16.0	23.5
Merged-chr1-135370117-2	chr1	135369617	135370617	+	734.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4946.0	NM_175259	77552.0	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41979719-2	chr19	41979219	41980219	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028152, intron 1 of 30)	PB1D7|SINE|Alu	1417.0	NM_028152	72199.0	Mm.218940	NM_028152	ENSMUSG00000025159	Mms19	2410001K24Rik|2610042O15Rik|AI316855|C79368|C86341|Mms19l	MMS19 (MET18 S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88263097-3	chr8	88262590	88263590	+	734.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9313.0	NM_007406	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr4-32556929-2	chr4	32556429	32557429	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109661, intron 2 of 4)	RMER15|LTR|ERVL	14733.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	18.5	20.5	10.5	19.0	47.0	18.5
Merged-chr11-117085939-2	chr11	117085439	117086439	+	734.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	8591.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32483547-2	chr2	32483047	32484047	+	734.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-32077.0	NM_146118	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19240007-2	chr7	19239507	19240507	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207525, intron 1 of 1)	B3|SINE|B2	11618.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60212091-2	chr11	60211591	60212591	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358315, intron 1 of 18)	intron (NM_001358315, intron 1 of 18)	-1620.0	NM_001358314	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32176271-2	chr16	32175771	32176771	+	734.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-3529.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85698585-3	chr12	85698086	85699086	+	734.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016767, intron 2 of 2)	intron (NM_016767, intron 2 of 2)	11866.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153267500-2	chr2	153267000	153268000	+	734.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_080463, exon 7 of 7)	3' UTR (NM_080463, exon 7 of 7)	-23916.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127085649-2	chr2	127085149	127086149	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026678, intron 3 of 7)	intron (NM_026678, intron 3 of 7)	14992.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	16.0	30.0	35.5	12.5	28.0	31.5
Merged-chr17-5614697-2	chr17	5614197	5615197	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	122097.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19826009-2	chr7	19825513	19826513	+	734.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3258.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-17933762-1	chr14	17933262	17934262	+	734.0	f0_balb.idr	intron (NM_001113417, intron 3 of 9)	intron (NM_001113417, intron 3 of 9)	-47882.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	2.0	0.0	0.0	5.0	0.5	1.5
Merged-chr5-31092516-2	chr5	31092016	31093016	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347323, intron 2 of 8)	intron (NM_001347323, intron 2 of 8)	1011.0	NM_011773	22784.0	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	1.5	0.0	0.0	0.0	0.0	1.0
Merged-chr16-17529644-2	chr16	17529144	17530144	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026909, intron 3 of 4)	B3|SINE|B2	1408.0	NM_026909	69009.0	Mm.10174	NM_026909	ENSMUSG00000022760	Thap7	1810004B07Rik	THAP domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10864527-2	chr19	10864027	10865027	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133804, intron 4 of 10)	intron (NM_133804, intron 4 of 10)	5252.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80673901-2	chr10	80673406	80674406	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021462, intron 2 of 13)	ID|SINE|ID	2387.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0.5	0.0	1.5	0.0	0.0	6.5
Merged-chr16-17891179-1	chr16	17890679	17891679	+	734.0	f0_balb.idr	intron (NM_001109750, intron 1 of 9)	CpG	549.0	NM_010048	13356.0	Mm.254515	NM_010048	ENSMUSG00000003166	Dgcr2	9930034O06Rik|DGS-C|Dgsc|Idd|Lan|Sez12|mKIAA0163	DiGeorge syndrome critical region gene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-117747576-3	chr12	117747100	117748100	+	734.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 25 of 27)	(TTC)n|Simple_repeat|Simple_repeat	-96261.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	8.5	13.5	15.5	0.5	5.5	3.5
Merged-chr18-61081944-2	chr18	61081444	61082444	+	734.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001146268, exon 22 of 23)	exon (NM_001146268, exon 22 of 23)	-23628.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.0	1.0	0.5	0.0	1.0	0.0
Merged-chr4-53073223-2	chr4	53072723	53073723	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 23 of 49)	intron (NM_013454, intron 23 of 49)	61343.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44364775-1	chr9	44364275	44365275	+	734.0	f1_balb.idr	Intergenic	B3|SINE|B2	-3105.0	NM_027889	71732.0	Mm.295013	NM_027889	ENSMUSG00000032127	Vps11	1200011A11Rik	VPS11, CORVET/HOPS core subunit	protein-coding	9.5	0.0	3.0	0.0	8.0	1.0
Merged-chr7-99184921-2	chr7	99184350	99185350	+	734.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2137.0	NM_026384	67800.0	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	3.5	2.5	3.0	7.5	4.0	4.5
Merged-chr19-17360853-2	chr19	17360359	17361359	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010265, intron 1 of 2)	MER92B|LTR|ERV1	-4192.0	NM_173442	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	11.0	22.0	26.5	44.5	30.5	58.0
Merged-chr6-4893671-2	chr6	4893171	4894171	+	734.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9649.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0.0	0.0	4.0	0.0	1.5	6.0
Merged-chr4-49630626-2	chr4	49630126	49631126	+	734.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1434.0	NM_001163263	109331.0	Mm.24765	NM_182999	ENSMUSG00000028309	Rnf20	4833430L21Rik|AW540162|C79397|mKIAA4116	ring finger protein 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107879692-2	chr13	107879192	107880192	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	10372.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-75392004-2	chr4	75391504	75392504	+	734.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-113712.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-5079113-2	chr7	5078613	5079613	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205231, intron 11 of 11)	intron (NM_001205231, intron 11 of 11)	-1122.0	NM_010147	13854.0	Mm.3091	NM_010147	ENSMUSG00000035203	Epn1	AA269831|Ibp1	epsin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-65138421-2	chr6	65137921	65138921	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019455, intron 1 of 5)	intron (NM_019455, intron 1 of 5)	6309.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65662040-2	chr17	65661540	65662540	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 6 of 6)	MTD|LTR|ERVL-MaLR	-19836.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57767834-2	chr6	57767334	57768334	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 3 of 4)	(TC)n|Simple_repeat|Simple_repeat	57291.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-82826955-2	chr6	82826455	82827455	+	734.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-52501.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20140888-1	chr11	20140388	20141388	+	734.0	f1_balb.idr	Intergenic	RLTR16B_MM|LTR|ERVK	-27937.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	4.5	7.5	0.0	13.5	6.0	0.0
Merged-chr19-53768758-2	chr19	53768258	53769258	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170847, intron 1 of 13)	intron (NM_001170847, intron 1 of 13)	91452.0	NM_001170847	73713.0	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-67858449-2	chr14	67857941	67858941	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177780, intron 4 of 51)	intron (NM_177780, intron 4 of 51)	1304.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	12.0	31.5	10.5	13.5	28.0	21.5
Merged-chr3-81047249-2	chr3	81046749	81047749	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	10833.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	12.5	47.0	17.0	23.5	28.0	38.0
Merged-chr11-75646677-2	chr11	75646177	75647177	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008916, intron 8 of 11)	intron (NM_008916, intron 8 of 11)	-4832.0	NM_008659	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	1.0	0.0	0.0	0.0	2.5	2.0
Merged-chr2-35447644-2	chr2	35447144	35448144	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	13805.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-143110387-2	chr2	143109887	143110887	+	734.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A|LTR|ERVK	31994.0	NM_020595	57329.0	Mm.157751	NM_020595	ENSMUSG00000027416	Otor	CDRAP|Fdp|MIA|MIAL	otoraplin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37867258-4	chr1	37866759	37867759	+	734.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1961.0	NM_001290720	211484.0	Mm.332756	NM_207228	ENSMUSG00000060771	Tsga10	4933432N21Rik|AI843383|Gm217|Mtsga10	testis specific 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87045748-2	chr17	87045242	87046242	+	734.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20181.0	NM_019936	56724.0	Mm.109329	NM_019936	ENSMUSG00000024146	Cript	1200020A08Rik|AA589469	cysteine-rich PDZ-binding protein	protein-coding	6.5	0.0	0.0	4.5	0.5	4.0
Merged-chr17-31223960-2	chr17	31223460	31224460	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177823, intron 6 of 13)	intron (NM_177823, intron 6 of 13)	15894.0	NM_177823	328795.0	Mm.387930	NM_177823	ENSMUSG00000042345	Ubash3a	5830413C03Rik|C330001M22|Sts-2|TULA|TULA-1	ubiquitin associated and SH3 domain containing, A	protein-coding	0.0	2.0	0.5	0.0	0.0	0.5
Merged-chr17-57422554-2	chr17	57422054	57423054	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 12 of 22)	Lx5|LINE|L1	63868.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106328214-3	chr1	106327763	106328763	+	733.972229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 4 of 16)	intron (NM_133821, intron 4 of 16)	156394.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-137541400-3	chr6	137540894	137541894	+	733.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271588, intron 1 of 20)	intron (NM_001271588, intron 1 of 20)	-21499.0	NM_001271589	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52535695-3	chr13	52535167	52536167	+	733.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4831.0	NM_001024474	68203.0	Mm.29362	NM_001024474	ENSMUSG00000047842	Diras2	2900052J15Rik|AI414999	DIRAS family, GTP-binding RAS-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11411904-3	chr8	11411425	11412425	+	733.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009932, intron 16 of 47)	intron (NM_009932, intron 16 of 47)	-66004.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62782071-4	chr10	62781563	62782563	+	733.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026201, intron 5 of 24)	B2_Mm1a|SINE|B2	10305.0	NM_026201	67500.0	Mm.196371	NM_026201	ENSMUSG00000020074	Ccar1	2610511G16Rik|9430036H15Rik|Carp1	cell division cycle and apoptosis regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122259447-2	chr8	122258958	122259958	+	733.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22683.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	2.0	1.5	3.0	2.0	5.0	1.0
Merged-chr8-71369255-3	chr8	71368784	71369784	+	733.888916	f1_balb.idr|f1_c57bl6.idr	exon (NM_001145780, exon 8 of 9)	exon (NM_001145780, exon 8 of 9)	-2014.0	NM_029865	77090.0	Mm.440170	NM_029865	ENSMUSG00000002396	Ocel1	9430098E02Rik|AI326022|AI593544	occludin/ELL domain containing 1	protein-coding	1.0	0.0	4.5	4.5	0.5	2.5
Merged-chr16-90280645-4	chr16	90280108	90281108	+	733.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346799, intron 1 of 19)	intron (NM_001346799, intron 1 of 19)	3878.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-13968976-4	chr13	13968475	13969475	+	733.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362405, intron 2 of 12)	intron (NM_001362405, intron 2 of 12)	14301.0	NM_178640	97884.0	Mm.21686	NM_178640	ENSMUSG00000039242	B3galnt2	A930105D20Rik|C80633|D230016N13Rik	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59941632-4	chr11	59941129	59942129	+	733.858337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6518.0	NR_045273	100504121.0	Mm.383770	NR_045273	ENSMUSG00000085260	Med9os	1700013G23Rik	mediator complex subunit 9, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-104287775-5	chr7	104287284	104288284	+	733.853333	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310602, intron 1 of 7)	intron (NM_001310602, intron 1 of 7)	322.0	NM_001310602	667823.0	Mm.482375	NM_001310602	ENSMUSG00000060441	Trim5	EG667823|Gm8833	tripartite motif-containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12320601-2	chr15	12320101	12321101	+	733.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025673)	promoter-TSS (NM_025673)	-895.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-23048796-2	chr2	23048296	23049296	+	733.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B2|LTR|ERVK	-8555.0	NM_145994	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118672347-2	chr9	118671857	118672857	+	733.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 10 of 27)	intron (NM_133721, intron 10 of 27)	-39335.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	58.0	81.5	53.5	38.5	72.0	39.5
Merged-chr2-18608358-3	chr2	18607852	18608852	+	733.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64110.0	NM_147778	12238.0	Mm.249586	NM_147778	ENSMUSG00000051154	Commd3	AW550818|Bup|D2Ertd542e	COMM domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25190570-4	chr12	25190105	25191105	+	733.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61431.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.5	0.5	5.0	5.0	6.0	7.0
Merged-chr3-95301534-3	chr3	95301033	95302033	+	733.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085383, intron 6 of 12)	intron (NM_001085383, intron 6 of 12)	5271.0	NM_001085383	71790.0	Mm.218844	NM_023628	ENSMUSG00000015702	Anxa9	1110003P15Rik|2310069F17Rik	annexin A9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-13173195-3	chr15	13172694	13173694	+	733.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007666, intron 1 of 11)	CpG	481.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84708460-4	chr8	84707850	84708850	+	733.770813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081981, exon 11 of 11)	3' UTR (NM_001081981, exon 11 of 11)	6893.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	13.5	57.5	42.5	32.5	90.5	33.5
Merged-chr9-65629752-6	chr9	65629257	65630257	+	733.763916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028030)	promoter-TSS (NM_028030)	-825.0	NM_028030	71973.0	Mm.29148	NM_028030	ENSMUSG00000032387	Rbpms2	2400008B06Rik|AI316523	RNA binding protein with multiple splicing 2	protein-coding	0.0	0.0	0.0	0.5	0.5	1.0
Merged-chr13-107863396-2	chr13	107862896	107863896	+	733.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	26668.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76110134-2	chr14	76109634	76110634	+	733.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013745)	promoter-TSS (NM_013745)	681.0	NM_026177	67467.0	Mm.260767	NM_026177	ENSMUSG00000022008	Gpalpp1	1200011I18Rik|Kiaa1704	GPALPP motifs containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-63997135-2	chr15	63996635	63997635	+	733.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_144846, intron 1 of 11)	intron (NM_144846, intron 1 of 11)	931.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35115576-2	chr9	35115094	35116094	+	733.75	f0_balb.idr|f0_c57.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-1134.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	23.5	19.5	20.0	14.5	14.0	6.5
Merged-chr15-27929132-2	chr15	27928632	27929632	+	733.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	96716.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-133632715-4	chr7	133632258	133633258	+	733.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4917.0	NM_178115	214764.0	Mm.174044	NM_145995	ENSMUSG00000039990	Edrf1	2700050L05Rik|AU022667|AW558805	erythroid differentiation regulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-5243778-3	chr5	5243283	5244283	+	733.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 3 of 14)	intron (NM_011074, intron 3 of 14)	22285.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr7-118802043-3	chr7	118801537	118802537	+	733.733337	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027815, intron 21 of 30)	intron (NM_027815, intron 21 of 30)	53576.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	3.0	0.0	2.5	0.0	0.0	0.0
Merged-chr3-145905767-3	chr3	145905263	145906263	+	733.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18499.0	NM_009740	12042.0	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17762315-3	chr12	17761784	17762784	+	733.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	71475.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	13.5	12.5	7.5	1.5	9.0	3.0
Merged-chr2-73395675-4	chr2	73395174	73396174	+	733.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-9194.0	NM_001276444	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149785309-3	chr4	149784864	149785864	+	733.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11097.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-137775272-3	chr3	137774767	137775767	+	733.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	8348.0	NR_105801	102466638.0		NR_105801	ENSMUSG00000099011	Mir6380	Gm27356|mmu-mir-6380	microRNA 6380	ncRNA	0.0	0.5	1.0	3.5	1.5	0.0
Merged-chr10-68705790-3	chr10	68705282	68706282	+	733.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17964.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75650681-3	chr2	75650226	75651226	+	733.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-8533.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	10.0	18.0	6.0	4.0	15.0	2.0
Merged-chr1-170932336-3	chr1	170931831	170932831	+	733.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B1|LTR|ERVL	-4748.0	NM_001160215	98752.0	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56465118-2	chr18	56464618	56465618	+	733.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	32986.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	2.5	12.0	11.5	3.5	18.0	5.5
Merged-chr17-73883327-2	chr17	73882827	73883827	+	733.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011723)	TTS (NM_011723)	66869.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-92876232-4	chr7	92875748	92876748	+	733.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028243, intron 1 of 8)	MIRc|SINE|MIR	995.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-12592171-3	chr10	12591661	12592661	+	733.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 50 of 73)	MTD|LTR|ERVL-MaLR	269574.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127670577-2	chr10	127670077	127671077	+	733.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3454.0	NR_045171	72243.0	Mm.482902	NR_045171	ENSMUSG00000040195	1700012D01Rik	-	RIKEN cDNA 1700012D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106156577-3	chr9	106156064	106157064	+	733.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_174846, exon 3 of 4)	exon (NM_174846, exon 3 of 4)	1574.0	NM_001039586	235582.0	Mm.335420	NM_174846	ENSMUSG00000020258	Glyctk	6230410P16Rik|C430006L12	glycerate kinase	protein-coding	2.5	4.5	2.0	1.5	0.0	2.0
Merged-chr4-133675230-4	chr4	133674789	133675789	+	733.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-2123.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	24.0	42.0	28.5	10.0	73.0	11.5
Merged-chr11-70801092-2	chr11	70800592	70801592	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045526, intron 1 of 4)	intron (NM_001045526, intron 1 of 4)	11469.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	4.0	3.0	1.5	0.0	2.5	2.0
Merged-chr7-73619713-2	chr7	73619213	73620213	+	733.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-61318.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-93664097-2	chr8	93663597	93664597	+	733.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55878.0	NR_154559	108167546.0	Mm.403939	NR_154559		Gm30606	-	predicted gene, 30606	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149712198-2	chr4	149711688	149712688	+	733.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10559.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	6.0	6.5	3.0	0.0	0.0	2.0
Merged-chr4-151934496-2	chr4	151933996	151934996	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172704, intron 1 of 15)	CpG	776.0	NM_172704	230935.0	Mm.21353	NM_172704	ENSMUSG00000039768	Dnajc11	E030019A03Rik	DnaJ heat shock protein family (Hsp40) member C11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10933625-2	chr16	10933125	10934125	+	733.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18828.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56567202-2	chr18	56566774	56567774	+	733.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001162989, intron 1 of 4)	B2_Mm2|SINE|B2	4705.0	NM_001162989	56698.0	Mm.214569	NM_019996	ENSMUSG00000008301	Phax	2810055C14Rik|4933427L19Rik|AU018701|AU018854|D18Ertd65e|Rnuxa|p55	phosphorylated adaptor for RNA export	protein-coding	5.0	0.5	10.0	5.5	9.5	9.0
Merged-chr11-106073942-2	chr11	106073442	106074442	+	733.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027346)	TTS (NM_027346)	7835.0	NM_027346	70207.0	Mm.343857	NM_027346	ENSMUSG00000001983	Taco1	2310066I18Rik|Ccdc44	translational activator of mitochondrially encoded cytochrome c oxidase I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34546510-2	chr5	34546010	34547010	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145858, intron 1 of 12)	intron (NM_001145858, intron 1 of 12)	-3066.0	NM_001145859	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	2.5	1.5	0.5	0.0	2.0	0.0
Merged-chr2-72196246-3	chr2	72195611	72196611	+	733.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355478, intron 7 of 26)	intron (NM_001355478, intron 7 of 26)	-89526.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	24.0	12.5	12.5	0.5	2.0	4.5
Merged-chr5-34562039-2	chr5	34561541	34562541	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 12 of 12)	intron (NM_011893, intron 12 of 12)	-11623.0	NM_001024458	11518.0	Mm.289106	NM_013457	ENSMUSG00000029106	Add1	AI256389	adducin 1 (alpha)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-76604590-2	chr2	76604090	76605090	+	733.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2C_Mm|LTR|ERVL	43404.0	NM_011871	23992.0	Mm.277250	NM_011871	ENSMUSG00000002731	Prkra	AV120107|PRK|Pact|RAX|lear	protein kinase, interferon inducible double stranded RNA dependent activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121984082-2	chr14	121983640	121984640	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 6 of 8)	intron (NM_026861, intron 6 of 8)	-18947.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	16.5	25.0	17.5	9.5	35.0	21.0
Merged-chr12-4279544-2	chr12	4279044	4280044	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010881, intron 13 of 22)	B1F|SINE|Alu	45517.0	NM_001204912	69709.0	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-28242318-3	chr2	28241814	28242814	+	733.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36625.0	NM_019498	56177.0	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44365245-2	chr19	44364745	44365745	+	733.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	31919.0	NM_183216	329065.0	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	0.0	1.5	1.5	0.0	1.5	1.5
Merged-chr13-92751106-2	chr13	92750606	92751606	+	733.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011582)	TTS (NM_011582)	43712.0	NM_011582	21828.0	Mm.20865	NM_011582	ENSMUSG00000021702	Thbs4	TSP4	thrombospondin 4	protein-coding	0.0	2.0	0.0	0.0	0.0	0.0
Merged-chr1-172003656-1	chr1	172003156	172004156	+	733.5	f0_balb.idr	3' UTR (NM_033509, exon 8 of 8)	3' UTR (NM_033509, exon 8 of 8)	23639.0	NM_033509	93840.0	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	VANGL planar cell polarity 2	protein-coding	0.5	0.0	4.0	0.0	2.0	2.0
Merged-chr1-136552525-2	chr1	136552025	136553025	+	733.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72376.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111536045-2	chr8	111535545	111536545	+	733.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168621)	promoter-TSS (NM_001168621)	-595.0	NM_001168622	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	0.5	23.0	18.0	5.0	14.0	15.5
Merged-chr8-72303326-2	chr8	72302826	72303826	+	733.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15736.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	5.5	32.5	20.0	4.5	12.5	17.0
Merged-chr9-21514979-2	chr9	21514479	21515479	+	733.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4745.0	NR_136911	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73627033-2	chr15	73626533	73627533	+	733.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2289.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-148523093-1	chr6	148522593	148523593	+	733.5	f0_balb.idr	Intergenic	Intergenic	-78741.0	NM_001347518	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-43753293-2	chr2	43752793	43753793	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 1 of 14)	intron (NM_001301831, intron 1 of 14)	4469.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96118171-2	chr9	96117671	96118671	+	733.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1258.0	NM_177352	235533.0	Mm.213651	NM_177352	ENSMUSG00000041440	Gk5	AV095337|C330018K18Rik|G630067D24Rik	glycerol kinase 5 (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33351332-2	chr16	33350832	33351832	+	733.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	29404.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71492097-2	chr8	71491597	71492597	+	733.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_032544, exon 8 of 9)	exon (NM_032544, exon 8 of 9)	3994.0	NM_032544	70359.0	Mm.142112	NM_032544	ENSMUSG00000007610	Gtpbp3	2410009F13Rik|AI607903	GTP binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr3-136425976-2	chr3	136425476	136426476	+	733.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23373.0	NR_040592	70055.0	Mm.261063	NR_040592	ENSMUSG00000099508	1700030L20Rik	-	RIKEN cDNA 1700030L20 gene	ncRNA	2.5	2.0	1.5	5.5	5.5	5.5
Merged-chr3-95680658-2	chr3	95680158	95681158	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301705, intron 11 of 17)	intron (NM_001301705, intron 11 of 17)	7259.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0.0	0.0	0.0	0.0	4.0	0.0
Merged-chr8-47871905-2	chr8	47871405	47872405	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133791, intron 9 of 22)	intron (NM_133791, intron 9 of 22)	47423.0	NM_029383	75677.0	Mm.390033	NM_029383	ENSMUSG00000038064	Cldn22	2210404A22Rik|5330431C14Rik|9530051B05Rik	claudin 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-127136344-2	chr1	127135844	127136844	+	733.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68642.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	7.5	3.5	13.0	13.5	21.0	14.0
Merged-chr1-138172327-2	chr1	138171827	138172827	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	2799.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11455158-2	chr16	11454658	11455658	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	49510.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-79602427-2	chr7	79601927	79602927	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019799, intron 3 of 10)	intron (NM_019799, intron 3 of 10)	15230.0	NM_019799	56315.0	Mm.10909	NM_019799	ENSMUSG00000030549	Rhcg	BB065800	Rhesus blood group-associated C glycoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8946607-2	chr12	8946107	8947107	+	733.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-1322.0	NM_010770	17182.0	Mm.42226	NM_010770	ENSMUSG00000020583	Matn3	AV009181	matrilin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80922546-2	chr12	80922046	80923046	+	733.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_033786)	TTS (NR_033786)	1901.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29500883-2	chr17	29500383	29501383	+	733.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9838.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-9124631-2	chr15	9124131	9125131	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 4 of 9)	intron (NM_013787, intron 4 of 9)	15823.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41994324-2	chr19	41993824	41994824	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	12561.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6117548-2	chr19	6117048	6118048	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133678, intron 1 of 1)	intron (NM_133678, intron 1 of 1)	1038.0	NM_133678	66406.0	Mm.303924	NM_133678	ENSMUSG00000024790	Sac3d1	2410004C24Rik|AU015683|shd1	SAC3 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-51970503-2	chr12	51970003	51971003	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177171, intron 1 of 35)	intron (NM_177171, intron 1 of 35)	818.0	NM_177171	320487.0	Mm.131941	NM_177171	ENSMUSG00000035181	Heatr5a	C230081H03Rik|D930036F22Rik|mKIAA1316	HEAT repeat containing 5A	protein-coding	14.5	7.0	4.5	14.0	6.0	6.0
Merged-chr11-110372001-4	chr11	110371498	110372498	+	733.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27104.0	NM_001356345	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100707502-2	chr5	100707002	100708002	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_152803, intron 3 of 11)	Lx8b|LINE|L1	12214.0	NM_152803	15442.0	Mm.265786	NM_152803	ENSMUSG00000035273	Hpse	HSE1|Hpa|Hpr1	heparanase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82906380-4	chr18	82905948	82906948	+	733.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4431.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156014952-3	chr1	156014463	156015463	+	733.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160018, intron 8 of 9)	intron (NM_001160018, intron 8 of 9)	19854.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	27.0	57.0	44.5	36.0	62.5	34.0
Merged-chr8-34124125-4	chr8	34123608	34124608	+	733.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001126314, exon 3 of 3)	exon (NM_001126314, exon 3 of 3)	9078.0	NM_001126314	234155.0	Mm.324008	NM_001126314	ENSMUSG00000071113	Mboat4	GOAT|Gm171	membrane bound O-acyltransferase domain containing 4	protein-coding	0.0	2.5	0.5	0.0	1.5	0.0
Merged-chr2-90625147-3	chr2	90624631	90625631	+	733.400024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44484.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7784070-3	chr9	7783537	7784537	+	733.361145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_049191)	promoter-TSS (NR_049191)	-353.0	NR_049191	100885830.0		NR_049191	ENSMUSG00000093615	Mir5618	Gm23685|mmu-mir-5618	microRNA 5618	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80434986-2	chr10	80434486	80435486	+	733.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1333.0	NM_001164148	21423.0	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25479067-2	chr14	25478567	25479567	+	733.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	19882.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115553163-2	chr5	115552702	115553702	+	733.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 10 of 10)	intron (NM_011223, intron 10 of 10)	-6265.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	2.0	0.0	0.5	1.5	0.0	0.0
Merged-chr8-108809037-2	chr8	108808533	108809533	+	733.333374	f0_balb.idr|f0_c57.idr	intron (NM_007496, intron 3 of 9)	intron (NM_007496, intron 3 of 9)	94389.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	2.5	0.0	3.5	0.5	5.5	6.0
Merged-chr19-33325487-2	chr19	33324987	33325987	+	733.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146342, intron 2 of 4)	intron (NM_001146342, intron 2 of 4)	66808.0	NM_001167818	67795.0	Mm.204591	NM_001146342	ENSMUSG00000071573	Rnls	6530404N21Rik|AI452315|AW060440|C10orf59	renalase, FAD-dependent amine oxidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40219329-2	chr12	40218829	40219829	+	733.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013562, intron 1 of 11)	intron (NM_013562, intron 1 of 11)	3482.0	NR_035459	100316693.0		NR_035459	ENSMUSG00000089371	Mir1938	mir-1938|mmu-mir-1938	microRNA 1938	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54849325-2	chr18	54848825	54849825	+	733.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	140855.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83077570-1	chr8	83077070	83078070	+	733.333313	f0_balb.idr	intron (NM_177378, intron 6 of 6)	ORR1F|LTR|ERVL-MaLR	-87782.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	8.0	27.5	11.5	19.0	26.0	22.5
Merged-chr6-3488344-3	chr6	3487841	3488841	+	733.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178899, intron 1 of 9)	intron (NM_178899, intron 1 of 9)	6157.0	NM_178899	101202.0	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-98186123-3	chr5	98185631	98186631	+	733.333313	f0_balb.idr|f1_balb.idr	promoter-TSS (NR_153823)	promoter-TSS (NR_153823)	-147.0	NR_153823	102637492.0	Mm.399020	NR_153823		A730035I17Rik	Gm34285	RIKEN cDNA A730035I17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr17-43590044-3	chr17	43589568	43590568	+	733.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045444, exon 1 of 3)	non-coding (NR_045444, exon 1 of 3)	1441.0	NR_045445	73504.0	Mm.9277	NR_045444	ENSMUSG00000090307	1700071M16Rik	-	RIKEN cDNA 1700071M16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29977551-2	chr2	29977051	29978051	+	733.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177668, intron 1 of 55)	B2_Mm2|SINE|B2	11991.0	NM_001309460	20740.0	Mm.204969	NM_001076554	ENSMUSG00000057738	Sptan1	2610027H02Rik|Spna-2|Spna2	spectrin alpha, non-erythrocytic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152922084-3	chr1	152921600	152922600	+	733.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19454.0	NM_001005507	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14823385-3	chr8	14822894	14823894	+	733.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 10 of 15)	intron (NM_172910, intron 10 of 15)	-65142.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	3.0	4.0	8.5	2.0	2.5	6.0
Merged-chr10-118737264-4	chr10	118736758	118737758	+	733.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131645.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82046800-2	chr15	82046302	82047302	+	733.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011482, intron 1 of 2)	intron (NM_011482, intron 1 of 2)	796.0	NM_011482	20826.0	Mm.299312	NM_011482	ENSMUSG00000063480	Snu13	FA-1|Fta1|Nhp2l1|Ssfa1	SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5)	protein-coding	3.5	45.0	35.5	13.5	61.5	21.0
Merged-chr4-148997633-2	chr4	148997155	148998155	+	733.25	f0_balb.idr|f1_balb.idr	intron (NM_019781, intron 3 of 8)	L2a|LINE|L2	-45333.0	NR_154553	108168987.0	Mm.393596	NR_154553		Gm13205	AA408865	predicted gene 13205	ncRNA	0.0	5.0	5.0	0.0	2.0	2.0
Merged-chr17-32412148-2	chr17	32411648	32412648	+	733.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_021319)	TTS (NM_021319)	-8566.0	NR_153797	320484.0	Mm.122284	NM_178785	ENSMUSG00000052142	Rasal3	A430107D22Rik	RAS protein activator like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31460356-6	chr2	31459832	31460832	+	733.222229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9938.0	NM_007494	11898.0	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-36158421-3	chr4	36157930	36158930	+	733.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166000, intron 4 of 8)	intron (NM_001166000, intron 4 of 8)	-313226.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	6.5	1.0	0.0	0.0	0.0	2.0
Merged-chr4-132930901-3	chr4	132930397	132931397	+	733.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8346.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	0.0	1.5	1.0	0.0	3.5	0.5
Merged-chr6-116675018-4	chr6	116674505	116675505	+	733.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1169.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16599526-2	chr19	16599026	16600026	+	733.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_008137, intron 3 of 6)	intron (NM_008137, intron 3 of 6)	163859.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146294644-2	chr5	146294144	146295144	+	733.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_153599, intron 7 of 12)	intron (NM_153599, intron 7 of 12)	63394.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74388553-2	chr1	74388053	74389053	+	733.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-3056.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-92356981-2	chr8	92356481	92357481	+	733.166687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018826)	promoter-TSS (NM_018826)	-815.0	NM_018826	54352.0	Mm.101153	NM_018826	ENSMUSG00000031737	Irx5	-	Iroquois homeobox 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr15-91661094-3	chr15	91660602	91661602	+	733.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12122.0	NM_025730	66725.0	Mm.37558	NM_025730	ENSMUSG00000036273	Lrrk2	4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46	leucine-rich repeat kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80756252-2	chr17	80755752	80756752	+	733.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28227.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-105599600-2	chr11	105599100	105600100	+	733.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_181071, intron 1 of 25)	intron (NM_181071, intron 1 of 25)	9614.0	NM_181071	77097.0	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96614893-2	chr10	96614393	96615393	+	733.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2108.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-26812133-2	chr18	26811633	26812633	+	733.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-1057976.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44133408-2	chr9	44132908	44133908	+	733.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_152189, intron 1 of 1)	intron (NR_152189, intron 1 of 1)	1077.0	NR_152189	100038560.0	Mm.429758	NR_152189		Gm10687	-	predicted gene 10687	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154752223-2	chr2	154751736	154752736	+	733.166626	f0_balb.idr|f0_c57.idr	Intergenic	HAL1b|LINE|L1	-38874.0	NM_001139512	19383.0	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	1.5	1.5	5.0	1.0	0.0	3.5
Merged-chr17-84096650-5	chr17	84096142	84097142	+	733.133301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	17982.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23464650-3	chr13	23464066	23465066	+	733.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013483, exon 3 of 8)	exon (NM_013483, exon 3 of 8)	1335.0	NM_013483	12231.0	Mm.1420	NM_013483	ENSMUSG00000000706	Btn1a1	Btn	butyrophilin, subfamily 1, member A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87670400-3	chr6	87669895	87670895	+	733.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024251, intron 1 of 9)	intron (NM_024251, intron 1 of 9)	1773.0	NM_024251	72103.0	Mm.31770	NM_024251	ENSMUSG00000030051	Aplf	2010301N04Rik|AI452191	aprataxin and PNKP like factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93943214-3	chr2	93942707	93943707	+	733.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13893.0	NM_001145034	620695.0	Mm.482106	NM_001145034	ENSMUSG00000087006	Gm13889	Ag2	predicted gene 13889	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90466692-4	chr3	90466195	90467195	+	733.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008727)	promoter-TSS (NM_008727)	-829.0	NM_008727	18160.0	Mm.4627	NM_008727	ENSMUSG00000027931	Npr1	AI893888|GC-A|NPR-A|NPRA|Pndr	natriuretic peptide receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-94615403-4	chr9	94614822	94615822	+	733.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-54570.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155406357-2	chr2	155405857	155406857	+	733.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_019825, exon 10 of 14)	exon (NM_019825, exon 10 of 14)	24501.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	0.0	4.0	12.5	14.0	3.0	5.5
Merged-chr15-76700178-2	chr15	76699678	76700678	+	733.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_182805)	TTS (NM_182805)	-1364.0	NM_027122	69572.0	Mm.34920	NM_027122	ENSMUSG00000019080	Mfsd3	2310010G13Rik	major facilitator superfamily domain containing 3	protein-coding	0.0	2.5	0.0	6.0	0.0	0.5
Merged-chr10-121361347-2	chr10	121360847	121361847	+	733.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3743.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr10-117438596-1	chr10	117438096	117439096	+	733.0	f1_c57bl6.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	8839.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	2.0	0.0	0.0	0.0	0.5	0.0
Merged-chr8-126495177-2	chr8	126494677	126495677	+	733.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-20112.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	1.5	2.5	2.5	2.0	21.5	6.5
Merged-chr2-79628789-2	chr2	79628283	79629283	+	733.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-6642.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	0.5	2.0	1.0	16.5	11.0	3.0
Merged-chr14-13549044-2	chr14	13548544	13549544	+	733.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163032, intron 2 of 4)	intron (NM_001163032, intron 2 of 4)	95086.0	NM_001163032	72003.0	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60004298-2	chr10	60003798	60004798	+	733.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199187, intron 1 of 10)	(T)n|Simple_repeat|Simple_repeat	971.0	NM_001199187	69090.0	Mm.155839	NM_026937	ENSMUSG00000044475	Ascc1	1810015P09Rik|AI550520|ASC1p50|CGI-18	activating signal cointegrator 1 complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88432771-3	chr3	88432269	88433269	+	733.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-7628.0	NM_001357749	229517.0	Mm.301740	NM_178696	ENSMUSG00000050144	Slc25a44	6720482A19|B430110G05Rik	solute carrier family 25, member 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-53880931-2	chr5	53880443	53881443	+	733.0	f0_balb.idr|f1_balb.idr	intron (NM_144517, intron 15 of 20)	intron (NM_144517, intron 15 of 20)	71316.0	NM_144517	67249.0	Mm.28823	NM_144517	ENSMUSG00000039178	Tbc1d19	2810453K03Rik	TBC1 domain family, member 19	protein-coding	0.0	0.0	0.0	3.5	23.0	0.5
Merged-chr12-84249442-2	chr12	84248942	84249942	+	733.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30561.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129237568-2	chr6	129237062	129238062	+	733.0	f0_balb.idr|f0_c57.idr	intron (NR_040268, intron 2 of 3)	intron (NR_040268, intron 2 of 3)	483.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	35.5	75.5	100.0	39.0	83.0	50.0
Merged-chr4-150001474-1	chr4	150000974	150001974	+	733.0	f0_balb.idr	intron (NM_173371, intron 1 of 4)	intron (NM_173371, intron 1 of 4)	1762.0	NM_001291004	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	0.0	1.5	4.0	0.0	2.0	0.0
Merged-chr8-40985111-2	chr8	40984614	40985614	+	733.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026840, intron 3 of 5)	intron (NM_026840, intron 3 of 5)	-32354.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	2.0	9.5	1.0	4.0	6.0	1.0
Merged-chr7-132997797-1	chr7	132997297	132998297	+	733.0	f1_balb.idr	intron (NM_001170744, intron 3 of 8)	intron (NM_001170744, intron 3 of 8)	17450.0	NM_001170744	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0.0	0.0	0.0	0.0	3.0	2.0
Merged-chr7-74686195-2	chr7	74685700	74686700	+	733.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-131420.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	5.0	5.0	4.5	2.0	0.0	9.0
Merged-chr5-21330422-2	chr5	21329922	21330922	+	733.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 4 of 18)	intron (NM_029195, intron 4 of 18)	-42251.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181376059-2	chr2	181375559	181376559	+	733.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048148, intron 1 of 5)	B3|SINE|B2	-5176.0	NM_023684	72699.0	Mm.440138	NM_023684	ENSMUSG00000090077	Lime1	2810038K19Rik|LIME	Lck interacting transmembrane adaptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106220255-1	chr9	106219755	106220755	+	733.0	f1_balb.idr	Intergenic	MLTR18D_MM|LTR|ERVK	-2343.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	4.0	22.5	9.0	9.5	10.5	0.5
Merged-chr13-76057386-3	chr13	76056788	76057788	+	733.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175495)	promoter-TSS (NM_175495)	-292.0	NM_175495	238725.0	Mm.167172	NM_175495	ENSMUSG00000045509	Gpr150	C030001A19Rik|PGR11	G protein-coupled receptor 150	protein-coding	18.5	15.0	5.5	13.0	15.5	6.0
Merged-chr2-152333671-2	chr2	152333171	152334171	+	733.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1032.0	NM_019705	24105.0	Mm.182145	NM_019705	ENSMUSG00000027466	Rbck1	AL033326|HOIL-1|HOIL-1L|UIP28|Ubce7ip3	RanBP-type and C3HC4-type zinc finger containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127507217-2	chr10	127506717	127507717	+	733.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359751, intron 6 of 11)	intron (NM_001359751, intron 6 of 11)	5500.0	NM_177707	237611.0	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	3.0	1.0	2.0	3.0	1.0	1.0
Merged-chr9-35278786-2	chr9	35278286	35279286	+	733.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR73|LTR|ERV1	-2319.0	NR_040715	71133.0	Mm.158577	NR_040715	ENSMUSG00000111746	4933422A05Rik	-	RIKEN cDNA 4933422A05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10692024-2	chr19	10691524	10692524	+	733.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	intron (NM_001361958, intron 1 of 4)	3289.0	NM_001361959	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4689731-2	chr18	4689231	4690231	+	733.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54802.0	NM_001081963	240185.0	Mm.33179	NM_001081963	ENSMUSG00000033960	Jcad	1110056P05Rik|9430020K01Rik|Gm328|mKIAA1462	junctional cadherin 5 associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-51507090-1	chr6	51506590	51507590	+	733.0	f1_c57bl6.idr	Intergenic	B4|SINE|B4	-16813.0	NM_001361582	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.0	3.0	2.0	6.5	2.5	1.0
Merged-chr4-41713945-1	chr4	41713445	41714445	+	733.0	f0_c57.idr	promoter-TSS (NM_027278)	promoter-TSS (NM_027278)	-428.0	NM_027278	69961.0	Mm.425182	NM_027278	ENSMUSG00000036114	Rpp25l	2810432D09Rik|AW987258|Rppl25	ribonuclease P/MRP 25 subunit-like	protein-coding	2.0	3.0	9.5	6.5	9.5	12.5
Merged-chr17-72940346-2	chr17	72939846	72940846	+	733.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029999, exon 3 of 3)	3' UTR (NM_029999, exon 3 of 3)	22041.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-47441705-1	chr18	47441205	47442205	+	733.0	f0_balb.idr	Intergenic	Intergenic	-10963.0	NR_033453	77668.0	Mm.98433	NR_033453		9130209A04Rik	-	RIKEN cDNA 9130209A04 gene	ncRNA	5.5	0.0	0.0	12.0	4.0	8.5
Merged-chr17-84128069-2	chr17	84127569	84128569	+	733.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	49409.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-31948634-2	chr12	31948134	31949134	+	733.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177993, intron 1 of 8)	intron (NM_177993, intron 1 of 8)	1611.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60730592-2	chr13	60730092	60731092	+	733.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 16 of 26)	intron (NM_134062, intron 16 of 26)	55772.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0.0	0.0	8.0	0.0	2.0	1.5
Merged-chr9-50856486-3	chr9	50856017	50857017	+	733.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034085)	promoter-TSS (NM_001034085)	-407.0	NM_001034085	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	10.5	27.5	35.0	2.5	16.5	4.0
Merged-chr19-56144408-1	chr19	56143908	56144908	+	733.0	f0_balb.idr	Intergenic	Intergenic	-143504.0	NM_001329936	226243.0	Mm.25791	NM_146101	ENSMUSG00000025075	Habp2	AI035669|FSAP|HABP|HGFAL|PHBP	hyaluronic acid binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120010904-2	chr2	120010404	120011404	+	733.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355293, intron 3 of 30)	intron (NM_001355293, intron 3 of 30)	-6613.0	NR_106125	102466842.0		NR_106125	ENSMUSG00000098632	Mir7665	Gm27478|mmu-mir-7665	microRNA 7665	ncRNA	0.0	0.0	1.0	11.0	1.0	2.0
Merged-chr8-123250831-2	chr8	123250288	123251288	+	733.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001310661, exon 4 of 15)	exon (NM_001310661, exon 4 of 15)	-3407.0	NM_020497	57247.0	Mm.379084	NM_020497	ENSMUSG00000001065	Zfp276	AW048709|D8Ertd370e|D8Ertd377e|Znf276	zinc finger protein (C2H2 type) 276	protein-coding	0.0	14.0	5.5	0.0	8.5	2.0
Merged-chr7-25752673-2	chr7	25752173	25753173	+	733.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360789, intron 1 of 14)	intron (NM_001360789, intron 1 of 14)	2086.0	NM_144922	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35061779-2	chr9	35061299	35062299	+	733.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	MLT1A0-int|LTR|ERVL-MaLR	-54929.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	13.5	63.0	57.0	34.0	55.5	32.0
Merged-chr18-61105066-2	chr18	61104566	61105566	+	733.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037859)	promoter-TSS (NM_001037859)	-506.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41377210-2	chr19	41376710	41377710	+	733.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 1 of 16)	MIR3|SINE|MIR	7860.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-68840548-2	chr1	68840048	68841048	+	733.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010154, intron 1 of 26)	Lx5|LINE|L1	267511.0	NM_010154	13869.0	Mm.442420	NM_010154	ENSMUSG00000062209	Erbb4	Her4|c-erbB-4	erb-b2 receptor tyrosine kinase 4	protein-coding	2.0	3.0	1.0	0.5	1.0	0.0
Merged-chr11-109346414-2	chr11	109345905	109346905	+	733.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027883)	promoter-TSS (NR_027883)	-462.0	NR_027883	67927.0	Mm.394490	NR_027883	ENSMUSG00000099630	1700096J18Rik	-	RIKEN cDNA 1700096J18 gene	ncRNA	0.0	4.5	2.5	0.5	11.5	0.5
Merged-chr13-110928354-3	chr13	110927840	110928840	+	733.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24494.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-108271229-1	chr5	108270729	108271729	+	733.0	f1_c57bl6.idr	intron (NM_026106, intron 1 of 2)	intron (NM_026106, intron 1 of 2)	2332.0	NM_026106	13486.0	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	7.5	23.0	16.5	8.0	22.5	16.5
Merged-chr11-61661353-2	chr11	61660853	61661853	+	733.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027817, intron 2 of 4)	intron (NM_027817, intron 2 of 4)	8032.0	NM_027817	71520.0	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58060109-2	chr11	58059609	58060609	+	733.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028451, exon 19 of 19)	3' UTR (NM_028451, exon 19 of 19)	-43861.0	NM_026949	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	1.0	0.0	0.5	0.0	0.0	0.0
Merged-chr11-59874547-2	chr11	59874047	59875047	+	733.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134029, intron 3 of 4)	intron (NM_134029, intron 3 of 4)	26474.0	NM_134029	103850.0	Mm.41761	NM_134029	ENSMUSG00000032615	Nt5m	2010013E09Rik|AI846937|dNT-2	5',3'-nucleotidase, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-45867184-1	chr1	45866684	45867684	+	733.0	f0_balb.idr	Intergenic	Intergenic	58410.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65625899-2	chr3	65625407	65626407	+	733.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33381.0	NR_106200	102465905.0		NR_106200	ENSMUSG00000098944	Mir8120	Gm27637|mmu-mir-8120	microRNA 8120	ncRNA	1.0	9.0	5.0	0.0	3.0	2.5
Merged-chr10-127066483-2	chr10	127065983	127066983	+	733.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025982)	TTS (NM_025982)	2948.0	NM_001355005	12567.0	Mm.6839	NM_009870	ENSMUSG00000006728	Cdk4	Crk3	cyclin-dependent kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61065744-3	chr18	61065267	61066267	+	733.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001146268, exon 7 of 23)	exon (NM_001146268, exon 7 of 23)	20617.0	NM_008809	18596.0	Mm.4146	NM_008809	ENSMUSG00000024620	Pdgfrb	AI528809|CD140b|PDGFR-1|Pdgfr	platelet derived growth factor receptor, beta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81178857-1	chr15	81178357	81179357	+	733.0	f1_c57bl6.idr	intron (NM_001082536, intron 1 of 13)	L2|LINE|L2	11900.0	NM_001082536	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	6.0	0.0	0.0	5.0	0.0	7.5
Merged-chr10-95330879-3	chr10	95330377	95331377	+	733.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5399.0	NR_045337	69629.0	Mm.250542	NR_045337	ENSMUSG00000100550	2310039L15Rik	A53T-syn|G2-3|PrPsynA53T|Tg(Prnp-SNCA*A53T)23Mkle	RIKEN cDNA 2310039L15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116450907-4	chr3	116450398	116451398	+	733.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26866.0	NM_001173553	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-78198191-2	chr13	78197691	78198691	+	733.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045195, exon 1 of 3)	non-coding (NR_045195, exon 1 of 3)	174.0	NR_045195	320174.0	Mm.393122	NR_045195		A830082K12Rik	-	RIKEN cDNA A830082K12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-71033889-1	chr12	71033389	71034389	+	733.0	f1_c57bl6.idr	intron (NM_001081195, intron 5 of 23)	intron (NM_001081195, intron 5 of 23)	17922.0	NM_001081195	238247.0	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	0.0	0.5	7.0	0.0	0.0	0.0
Merged-chr4-141609844-1	chr4	141609344	141610344	+	733.0	f1_balb.idr	Intergenic	Intergenic	-3792.0	NM_133754	74202.0	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	0.5	0.0	0.5	3.0	0.0	2.5
Merged-chr4-55645890-2	chr4	55645390	55646390	+	733.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113415.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	3.0	2.5	0.0	0.0	14.0	0.5
Merged-chr2-167291837-2	chr2	167291337	167292337	+	733.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51300.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-67039379-2	chr1	67038879	67039879	+	733.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021295)	promoter-TSS (NM_021295)	-507.0	NM_021295	14768.0	Mm.20522	NM_021295	ENSMUSG00000026000	Lancl1	AW124738|Gpr69|Gpr69a|p40	LanC (bacterial lantibiotic synthetase component C)-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-52439500-2	chr8	52439000	52440000	+	733.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	82889.0	NR_151738	330767.0	Mm.246790	NR_151738	ENSMUSG00000110013	1190028D05Rik	-	RIKEN cDNA 1190028D05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-119499078-2	chr14	119498578	119499578	+	733.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015820, intron 1 of 1)	intron (NM_015820, intron 1 of 1)	-250149.0	NR_045621	75432.0	Mm.443277	NR_045621	ENSMUSG00000100274	1700006F04Rik	-	RIKEN cDNA 1700006F04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-90487360-1	chr6	90486860	90487860	+	733.0	f0_balb.idr	Intergenic	Intergenic	24784.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124002185-2	chr5	124001685	124002685	+	733.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145070, exon 32 of 32)	3' UTR (NM_145070, exon 32 of 32)	5333.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50972714-1	chr15	50972214	50973214	+	733.0	f0_balb.idr	Intergenic	Intergenic	-82673.0	NM_032000	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	4.5	0.0	1.5	0.0	0.5	0.0
Merged-chr13-99028737-3	chr13	99028238	99029238	+	733.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-44173.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-31948093-3	chr11	31947616	31948616	+	732.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17517.0	NM_026262	67592.0	Mm.78654	NM_026262	ENSMUSG00000020299	4930524B15Rik	-	RIKEN cDNA 4930524B15 gene	protein-coding	16.5	32.5	19.5	1.0	0.0	3.0
Merged-chr10-98797026-3	chr10	98796546	98797546	+	732.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117596.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4309836-3	chr7	4309329	4310329	+	732.861084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B1|LTR|ERVK	-27895.0	NM_010746	17086.0	Mm.240231	NM_010746	ENSMUSG00000062524	Ncr1	Ly94|NKp46	natural cytotoxicity triggering receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77861960-4	chr18	77861454	77862454	+	732.854187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 6 of 14)	intron (NM_013831, intron 6 of 14)	-65564.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3806083-2	chr12	3805583	3806583	+	732.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007872)	promoter-TSS (NM_007872)	-897.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-13970625-2	chr18	13970125	13971125	+	732.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360804, intron 2 of 7)	CpG	2108.0	NM_001360804	225207.0	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25062695-2	chr8	25062195	25063195	+	732.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 4 of 11)	intron (NM_031257, intron 4 of 11)	-23733.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	13.0	33.5	43.5	18.5	39.0	26.0
Merged-chr8-120675830-2	chr8	120675330	120676330	+	732.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	7510.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143087270-2	chr7	143086771	143087771	+	732.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_020277, intron 4 of 24)	intron (NM_020277, intron 4 of 24)	7371.0	NM_020277	56843.0	Mm.286668	NM_020277	ENSMUSG00000009246	Trpm5	9430099A16Rik|LTrpC-5|Ltrpc5|Mtr1	transient receptor potential cation channel, subfamily M, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95047205-6	chr4	95046751	95047751	+	732.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4971.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	4.0	0.0	0.0	0.0	5.5	1.5
Merged-chr3-146185135-2	chr3	146184635	146185635	+	732.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 11 of 13)	intron (NM_001005846, intron 11 of 13)	34961.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49766520-4	chr16	49766023	49767023	+	732.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC4|LINE|L1	67229.0	NM_028680	73916.0	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19196792-2	chr7	19196292	19197292	+	732.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347582, intron 14 of 21)	intron (NM_001347582, intron 14 of 21)	15327.0	NR_029763	724063.0		NR_029763	ENSMUSG00000065543	Mir330	Mirn330|mir-330|mmu-mir-330	microRNA 330	ncRNA	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr12-73310306-3	chr12	73309803	73310803	+	732.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037717, intron 4 of 15)	intron (NM_001037717, intron 4 of 15)	23455.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	2.0	9.5	0.5	1.0	0.5	1.0
Merged-chr11-100741889-2	chr11	100741389	100742389	+	732.833313	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081194, exon 16 of 17)	exon (NM_001081194, exon 16 of 17)	-3674.0	NM_001305003	19345.0	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128491067-2	chr10	128490567	128491567	+	732.833313	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001114096)	TTS (NM_001114096)	1942.0	NM_001317220	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20149791-4	chr11	20149295	20150295	+	732.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-36844.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30269444-3	chr2	30268864	30269864	+	732.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252571, intron 1 of 9)	B4A|SINE|B4	2545.0	NM_001252570	227696.0	Mm.297949	NM_172267	ENSMUSG00000079484	Phyhd1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76354111-2	chr15	76353611	76354611	+	732.799988	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164608, exon 8 of 8)	3' UTR (NM_001164608, exon 8 of 8)	2817.0	NM_026859	68877.0	Mm.289680	NM_026859	ENSMUSG00000022553	Maf1	1110068E11Rik|AU042856	MAF1 homolog, negative regulator of RNA polymerase III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79225524-2	chr11	79225024	79226024	+	732.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17500.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-65336998-4	chr14	65336505	65337505	+	732.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21671.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	0.0	15.5	9.5	0.0	9.0	7.5
Merged-chr4-132035922-3	chr4	132035469	132036469	+	732.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	MTB_Mm|LTR|ERVL-MaLR	13109.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98790535-2	chr11	98790035	98791035	+	732.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4981.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66143854-2	chr5	66143360	66144360	+	732.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	7118.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	3.5	15.0	11.5	0.5	8.5	1.5
Merged-chr14-60805798-2	chr14	60805298	60806298	+	732.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_027436, intron 7 of 18)	L2|LINE|L2	21232.0	NR_040642	70478.0	Mm.274650	NM_027436	ENSMUSG00000021993	Mipep	5730405E07Rik|MIP	mitochondrial intermediate peptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68132231-3	chr10	68131670	68132670	+	732.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 5 of 9)	intron (NM_023598, intron 5 of 9)	146556.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86202318-2	chr11	86201818	86202818	+	732.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_130959, intron 1 of 6)	RLTR6-int|LTR|ERV1	958.0	NR_130958	74038.0	Mm.171304	NR_130958	ENSMUSG00000085208	Brip1os	4632419I22Rik	BRCA1 interacting protein C-terminal helicase 1, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100464906-2	chr7	100464406	100465406	+	732.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 32 of 32)	intron (NM_001017985, intron 32 of 32)	-8085.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	4.0	9.0	7.0	4.5	25.0	5.0
Merged-chr15-84233050-2	chr15	84232550	84233550	+	732.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	intron (NM_133167, intron 1 of 12)	1007.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135196005-2	chr5	135195505	135196505	+	732.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011714, intron 1 of 18)	B3|SINE|B2	8682.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101679806-3	chr7	101679295	101680295	+	732.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009191, intron 2 of 15)	intron (NM_009191, intron 2 of 15)	16027.0	NM_009191	20480.0	Mm.3990	NM_009191	ENSMUSG00000001829	Clpb	AL118244|Skd3	ClpB caseinolytic peptidase B	protein-coding	1.0	0.5	0.0	0.0	0.0	0.0
Merged-chr15-99316994-2	chr15	99316494	99317494	+	732.700012	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001348256)	TTS (NM_001348256)	13710.0	NM_001348256	54614.0	Mm.358668	NM_018786	ENSMUSG00000023007	Prpf40b	2610317D23Rik|Hypc	pre-mRNA processing factor 40B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-25713334-3	chr3	25712839	25713839	+	732.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357095, intron 4 of 6)	RLTR26|LTR|ERVK	440647.0	NM_001163387	192167.0	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102460243-3	chr15	102459771	102460771	+	732.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025385, intron 3 of 4)	intron (NM_025385, intron 3 of 4)	1101.0	NM_025385	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36152128-3	chr15	36151637	36152637	+	732.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081253, exon 4 of 5)	exon (NM_001081253, exon 4 of 5)	-11737.0	NM_001195748	626596.0	Mm.321798	NM_001195748	ENSMUSG00000037627	Rgs22	-	regulator of G-protein signalling 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11719365-3	chr11	11718861	11719861	+	732.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301865, intron 3 of 6)	intron (NM_001301865, intron 3 of 6)	29184.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46087699-2	chr4	46087200	46088200	+	732.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_021883, intron 4 of 9)	intron (NM_021883, intron 4 of 9)	48478.0	NM_021883	21916.0	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	22.5	22.0	14.0	13.0	71.5	46.0
Merged-chr16-3892988-4	chr16	3892506	3893506	+	732.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290689, intron 1 of 5)	intron (NM_001290689, intron 1 of 5)	8387.0	NM_001290689	74763.0	Mm.28403	NM_029090	ENSMUSG00000005982	Naa60	1200013P24Rik|AI315146|HAT4|Nat15|NatF	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27667160-4	chr15	27666646	27667646	+	732.625	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	14396.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150065157-2	chr4	150064657	150065657	+	732.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-3297.0	NR_029751	723848.0		NR_029751	ENSMUSG00000065493	Mir34a	Mirn34a|mir-34a|mmu-mir-34a	microRNA 34a	ncRNA	12.5	0.0	2.5	2.0	9.5	4.0
Merged-chr10-115252405-4	chr10	115251843	115252843	+	732.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025706)	promoter-TSS (NM_025706)	-850.0	NM_025706	66687.0	Mm.22252	NM_025706	ENSMUSG00000020130	Tbc1d15	4432405K22Rik|AU022358|AU023730|AW557774|Ly6dl|Rab7-GAP	TBC1 domain family, member 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121533339-3	chr10	121532863	121533863	+	732.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53431.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	0.0	0.0	1.0	0.0	0.0	1.5
Merged-chr10-98937930-3	chr10	98937419	98938419	+	732.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	22767.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-53519092-3	chr10	53518578	53519578	+	732.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037973)	promoter-TSS (NR_037973)	-89.0	NR_037973	100502868.0	Mm.297722	NR_037973	ENSMUSG00000112739	Gm20597	B230314j19	predicted gene, 20597	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-4405102-4	chr10	4404597	4405597	+	732.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358796, intron 12 of 13)	intron (NM_001358796, intron 12 of 13)	-16989.0	NM_001033466	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0.5	6.5	9.5	2.5	1.0	4.0
Merged-chr14-45041244-2	chr14	45040744	45041744	+	732.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53133.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27269743-2	chr3	27269243	27270243	+	732.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	-47334.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55602561-2	chr14	55602061	55603061	+	732.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_194346, intron 18 of 20)	intron (NM_194346, intron 18 of 20)	-1424.0	NM_008394	16391.0	Mm.2032	NM_008394	ENSMUSG00000002325	Irf9	Irf-9|Isgf3g|p48	interferon regulatory factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124001709-2	chr5	124001209	124002209	+	732.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145070, intron 30 of 31)	intron (NM_145070, intron 30 of 31)	4857.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61683065-2	chr10	61682565	61683565	+	732.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358488, intron 2 of 7)	intron (NM_001358488, intron 2 of 7)	-2775.0	NR_126477	75539.0		NR_126477		1700022H01Rik	-	RIKEN cDNA 1700022H01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120714801-2	chr11	120714301	120715301	+	732.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347611)	promoter-TSS (NM_001347611)	848.0	NM_153545	217366.0	Mm.347545	NM_153545	ENSMUSG00000025145	Lrrc45	BC023296	leucine rich repeat containing 45	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62516043-2	chr4	62515543	62516543	+	732.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008525, intron 1 of 11)	intron (NM_008525, intron 1 of 11)	3866.0	NM_001276446	17025.0	Mm.6988	NM_008525	ENSMUSG00000028393	Alad	ALADH|Lv	aminolevulinate, delta-, dehydratase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120444023-2	chr11	120443523	120444523	+	732.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145363, intron 1 of 2)	intron (NM_145363, intron 1 of 2)	1392.0	NM_145363	208634.0	Mm.209875	NM_145363	ENSMUSG00000039691	Tspan10	Ocsp	tetraspanin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36497627-2	chr15	36497127	36498127	+	732.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175134)	promoter-TSS (NM_175134)	-836.0	NM_175134	68839.0	Mm.396537	NM_175134	ENSMUSG00000048307	Ankrd46	1110054N06Rik|AI314978|AI987733	ankyrin repeat domain 46	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125471029-2	chr7	125470529	125471529	+	732.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360659, intron 5 of 7)	intron (NM_001360659, intron 5 of 7)	20513.0	NM_001360659	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	0.0	2.5	1.0	7.0	2.0	1.5
Merged-chr6-38553563-2	chr6	38553063	38554063	+	732.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170848, intron 1 of 8)	B1_Mus1|SINE|Alu	-2160.0	NM_001331223	192196.0	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4499653-2	chr7	4499153	4500153	+	732.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029834, intron 1 of 21)	ID_B1|SINE|B4	2027.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102909553-2	chr14	102909053	102910053	+	732.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	73079.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167654668-2	chr2	167654168	167655168	+	732.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_145538, exon 2 of 6)	exon (NM_145538, exon 2 of 6)	6876.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122366350-2	chr2	122365856	122366856	+	732.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013829, intron 1 of 5)	intron (NM_001013829, intron 1 of 5)	2562.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	0.0	0.0	5.0	1.0	5.0	1.0
Merged-chr5-64351811-2	chr5	64351311	64352311	+	732.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310611)	TTS (NM_001310611)	116131.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-71595319-2	chr16	71594819	71595819	+	732.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	345415.0	NR_040576	78221.0	Mm.399298	NR_040576		4930567J20Rik	-	RIKEN cDNA 4930567J20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84422018-2	chr1	84421518	84422518	+	732.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_152915, intron 8 of 12)	MTC|LTR|ERVL-MaLR	-137373.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6271051-2	chr19	6270551	6271551	+	732.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5845.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22349322-2	chr16	22348822	22349822	+	732.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5B|DNA|hAT-Charlie	54334.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82992542-2	chr15	82992042	82993042	+	732.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30596.0	NM_028728	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16913197-2	chr7	16912697	16913697	+	732.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	6707.0	NM_008967	19222.0	Mm.287572	NM_008967	ENSMUSG00000043017	Ptgir	IP|PGI2	prostaglandin I receptor (IP)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68477450-2	chr11	68476950	68477950	+	732.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_177320, exon 5 of 19)	exon (NM_177320, exon 5 of 19)	-25569.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31851911-2	chr17	31851411	31852411	+	732.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010831, intron 3 of 13)	intron (NM_010831, intron 3 of 13)	3893.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-143768174-2	chr4	143767674	143768674	+	732.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21160.0	NM_001007077	194227.0	Mm.371676	NM_001007077	ENSMUSG00000066031	Gm13023	BC084594|MGC:91194	predicted gene 13023	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122048779-2	chr14	122048279	122049279	+	732.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14105.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	0.0	5.0	2.0	2.5	6.0	7.5
Merged-chr17-26606594-2	chr17	26606046	26607046	+	732.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	45034.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	6.0	10.0	7.0	1.5	6.5	12.0
Merged-chr11-83742157-2	chr11	83741657	83742657	+	732.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4783.0	NM_183249	66107.0	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-90861716-3	chr8	90861207	90862207	+	732.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	32872.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	9.5	5.0	4.5	11.0	12.5	12.5
Merged-chr11-76496076-2	chr11	76495576	76496576	+	732.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198018, intron 1 of 21)	B3A|SINE|B2	-1581.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	5.5	25.0	17.5	9.5	24.0	19.0
Merged-chr18-39442514-4	chr18	39442052	39443052	+	732.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	44693.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-106474394-2	chr4	106473894	106474894	+	732.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10069.0	NM_153565	100102.0	Mm.133268	NM_153565	ENSMUSG00000044254	Pcsk9	AI415265|AI747682|FH3|HCHOLA3|Narc1|PC9	proprotein convertase subtilisin/kexin type 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83269048-2	chr11	83268548	83269548	+	732.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17678.0	NM_001166028	237890.0	Mm.297670	NM_001166028	ENSMUSG00000082101	Slfn14	Gm20|Slfn14-ps	schlafen 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5606876-2	chr17	5606376	5607376	+	732.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	114276.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184053264-2	chr1	184052764	184053764	+	732.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022019, intron 2 of 3)	intron (NM_022019, intron 2 of 3)	18883.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84627856-2	chr17	84627356	84628356	+	732.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172256, intron 1 of 12)	B4A|SINE|B4	1357.0	NM_172256	213575.0	Mm.246119	NM_172256	ENSMUSG00000024253	Dync2li1	4933404O11Rik|CGI-60|D2lic|LIC3|mD2LIC	dynein cytoplasmic 2 light intermediate chain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25187116-2	chr17	25186616	25187616	+	732.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_183150, exon 2 of 2)	3' UTR (NM_183150, exon 2 of 2)	-1281.0	NM_001357877	74154.0	Mm.267353	NM_028789	ENSMUSG00000015127	Unkl	1300004G08Rik	unkempt family like zinc finger	protein-coding	1.0	1.5	0.5	0.0	5.0	2.0
Merged-chr5-134231096-2	chr5	134230596	134231596	+	732.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1471.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97400451-2	chr7	97399951	97400951	+	732.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024220, intron 1 of 2)	intron (NM_024220, intron 1 of 2)	448.0	NM_024220	68197.0	Mm.334031	NM_024220	ENSMUSG00000030647	Ndufc2	1810004I06Rik|2010300P09Rik|G1|R75094	NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2	protein-coding	0.5	0.5	5.0	12.0	27.5	8.5
Merged-chr17-31042906-2	chr17	31042406	31043406	+	732.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14788.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0.0	1.0	0.0	0.0	0.0	2.5
Merged-chr11-118158369-2	chr11	118157869	118158869	+	732.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29150.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-22163902-4	chr10	22163407	22164407	+	732.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359809, intron 1 of 7)	IAPEY4_LTR|LTR|ERVK	5298.0	NM_009016	19368.0	Mm.458004	NM_009016		Raet1a	RAE-1alpha|Rae1alpha|Raet1	retinoic acid early transcript 1, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-89261540-2	chr9	89261040	89262040	+	732.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR72_RN|LTR|ERV1	50156.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	13.5	14.0	21.0	10.5	19.0	14.0
Merged-chr19-45229646-5	chr19	45229157	45230157	+	732.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5579.0	NM_010691	16814.0	Mm.116815	NM_010691	ENSMUSG00000025216	Lbx1	Lbx1h	ladybird homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49397930-3	chr7	49397437	49398437	+	732.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 3 of 37)	intron (NM_175272, intron 3 of 37)	151748.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-119001968-2	chr10	119001468	119002468	+	732.43335	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	48531.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	6.0	2.5	3.0	6.0	2.5	3.0
Merged-chr3-58978271-4	chr3	58977785	58978785	+	732.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28693.0	NM_177855	329650.0	Mm.240059	NM_177855	ENSMUSG00000056476	Med12l	A130035F20|A630079M02|AU044581|TRALPUSH	mediator complex subunit 12-like	protein-coding	0.0	0.0	0.0	22.0	0.0	0.0
Merged-chr9-25152761-4	chr9	25152269	25153269	+	732.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020586)	promoter-TSS (NM_020586)	-988.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32150934-4	chr2	32150435	32151435	+	732.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159634)	promoter-TSS (NM_001159634)	-213.0	NM_172661	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-41288761-4	chr12	41288253	41289253	+	732.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	197304.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84657408-6	chr3	84656873	84657873	+	732.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8819.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128665284-2	chr4	128664784	128665784	+	732.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	MIRc|SINE|MIR	10582.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-79869250-2	chr7	79868750	79869750	+	732.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21040.0	NM_008486	16790.0	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-24421523-2	chr8	24421023	24422023	+	732.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17423.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	1.0	23.0	17.0	9.0	28.5	13.5
Merged-chr2-30436354-3	chr2	30435849	30436849	+	732.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138748, intron 5 of 9)	intron (NM_138748, intron 5 of 9)	20299.0	NM_138748	110854.0	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97403110-2	chr6	97402610	97403610	+	732.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	56176.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123869113-2	chr5	123868642	123869642	+	732.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-3626.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	7.0	5.5	4.0	3.0	2.5	3.5
Merged-chr15-81022219-1	chr15	81021719	81022719	+	732.333313	f0_c57.idr	intron (NM_001082536, intron 6 of 13)	intron (NM_001082536, intron 6 of 13)	44454.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49794530-3	chr7	49794054	49795054	+	732.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133740, intron 8 of 15)	intron (NM_133740, intron 8 of 15)	16196.0	NM_133740	71974.0	Mm.33202	NM_133740	ENSMUSG00000030505	Prmt3	2010005E20Rik|2410018A17Rik|AL033309|Hrmt1l3	protein arginine N-methyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64344324-3	chr13	64343829	64344829	+	732.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26191.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	3.5	18.5	17.5	5.0	4.0	3.5
Merged-chr4-42946126-3	chr4	42945625	42946625	+	732.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3742.0	NM_001355438	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109251876-2	chr4	109251376	109252376	+	732.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033226, intron 7 of 7)	intron (NM_001033226, intron 7 of 7)	16244.0	NM_001033226	108802.0	Mm.318248	NM_001033226	ENSMUSG00000028558	Calr4	4933403L16Rik|AU017583	calreticulin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166116157-3	chr2	166115658	166116658	+	732.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252579, intron 3 of 20)	intron (NM_001252579, intron 3 of 20)	39127.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60703266-3	chr11	60702742	60703742	+	732.266663	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008502, intron 2 of 20)	intron (NM_008502, intron 2 of 20)	3552.0	NM_008502	16897.0	Mm.285453	NM_008502	ENSMUSG00000020536	Llgl1	AI325176|Lgl1|Llglh|Mgl1	LLGL1 scribble cell polarity complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-149098867-3	chr3	149098381	149099381	+	732.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-144246.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	1.5	3.5	5.0	4.5	10.0	18.5
Merged-chr6-119430681-3	chr6	119430142	119431142	+	732.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-13114.0	NM_197985	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86690477-2	chr11	86689977	86690977	+	732.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175004, exon 3 of 3)	3' UTR (NM_175004, exon 3 of 3)	6396.0	NM_001098810	217057.0	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166726269-2	chr2	166725769	166726769	+	732.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-12437.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85736418-2	chr12	85735918	85736918	+	732.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10121.0	NM_145447	217721.0	Mm.301076	NM_145447	ENSMUSG00000034258	Flvcr2	CCT|Mfsd7c	feline leukemia virus subgroup C cellular receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97115228-2	chr11	97114728	97115728	+	732.25	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019507, exon 1 of 6)	5' UTR (NM_019507, exon 1 of 6)	103.0	NM_019507	57765.0	Mm.94519	NM_019507	ENSMUSG00000001444	Tbx21	TBT1|Tbet|Tblym	T-box 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35480281-3	chr2	35479782	35480782	+	732.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18833.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100330452-2	chr11	100329952	100330952	+	732.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3955.0	NM_010257	14459.0	Mm.4767	NM_010257	ENSMUSG00000017165	Gast	GAS	gastrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135522127-3	chr3	135521622	135522622	+	732.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027288, intron 5 of 16)	intron (NM_027288, intron 5 of 16)	36511.0	NM_027288	110173.0	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-121080197-3	chr7	121079719	121080719	+	732.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3219.0	NM_139310	246190.0	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5064409-2	chr11	5063909	5064909	+	732.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_001190406, exon 2 of 5)	exon (NM_001190406, exon 2 of 5)	918.0	NM_144560	78926.0	Mm.44591	NM_030228	ENSMUSG00000034201	Gas2l1	4930500E24Rik|D0Jmb1|Gar22|TU-71.1	growth arrest-specific 2 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47735108-3	chr9	47734613	47735613	+	732.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	83095.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	116.5	192.5	146.0	113.5	147.0	168.0
Merged-chr16-65174708-3	chr16	65174199	65175199	+	732.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68915.0	NM_008310	15557.0	Mm.5040	NM_008310	ENSMUSG00000050783	Htr1f	Htr1eb	5-hydroxytryptamine (serotonin) receptor 1F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25411761-2	chr15	25411261	25412261	+	732.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	2003.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-37017702-2	chr17	37017202	37018202	+	732.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010814, intron 2 of 7)	intron (NM_010814, intron 2 of 7)	5696.0	NM_010814	17441.0	Mm.210857	NM_010814	ENSMUSG00000076439	Mog	B230317G11Rik	myelin oligodendrocyte glycoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-14047102-2	chr10	14046608	14047608	+	732.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	B3A|SINE|B2	80729.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.0	2.5	0.0	5.5	0.0	2.0
Merged-chr9-67830928-2	chr9	67830495	67831495	+	732.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163143, exon 2 of 2)	exon (NM_001163143, exon 2 of 2)	1335.0	NM_001163143	244911.0	Mm.325849	NM_001163143	ENSMUSG00000047990	C2cd4a	EG244911|Fam148a	C2 calcium-dependent domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr11-6548272-2	chr11	6547772	6548772	+	732.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190343, intron 1 of 8)	intron (NM_001190343, intron 1 of 8)	1385.0	NM_001190343	216527.0	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	10.5	12.0	10.5	7.5	23.0	13.5
Merged-chr8-106007342-3	chr8	106006843	106007843	+	732.127747	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19|LTR|ERVK	-4135.0	NM_025518	66369.0	Mm.287500	NM_025518	ENSMUSG00000031901	Dus2	2310016K04Rik|Dus2l	dihydrouridine synthase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99965308-4	chr7	99964805	99965805	+	732.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175388, intron 1 of 5)	intron (NM_175388, intron 1 of 5)	15153.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	32.0	8.0	16.0	12.0	63.5	36.5
Merged-chr2-165337258-2	chr2	165336758	165337758	+	732.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-10779.0	NM_207706	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-68302791-3	chr7	68302289	68303289	+	732.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013811, intron 2 of 8)	intron (NM_001013811, intron 2 of 8)	-26195.0	NR_040340	100504026.0	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	-	predicted gene 16157	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88610769-3	chr3	88610275	88611275	+	732.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5432.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	4.5	1.5	8.5	0.0	2.5	0.0
Merged-chr11-58093991-2	chr11	58093491	58094491	+	732.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-9979.0	NM_026949	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	6.5	35.5	9.5	18.0	82.0	50.0
Merged-chr9-14807437-4	chr9	14806931	14807931	+	732.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310728, intron 9 of 18)	MTC|LTR|ERVL-MaLR	22777.0	NM_018736	17535.0	Mm.149071	NM_018736	ENSMUSG00000031928	Mre11a	Mre11|Mre11b	MRE11A homolog A, double strand break repair nuclease	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-31735302-4	chr11	31734794	31735794	+	732.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63432.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	0.0	7.5	2.0	3.0	9.0	3.5
Merged-chr13-59809373-2	chr13	59808873	59809873	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153538, intron 9 of 27)	intron (NM_153538, intron 9 of 27)	13774.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	5.5	0.0	1.0	0.0	0.0	0.5
Merged-chr6-125565445-1	chr6	125564945	125565945	+	732.0	f1_c57bl6.idr	intron (NM_011708, intron 3 of 51)	intron (NM_011708, intron 3 of 51)	12497.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	2.0	0.0	2.0	0.0	0.0	0.5
Merged-chr11-93956765-2	chr11	93956265	93957265	+	732.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008705)	promoter-TSS (NM_008705)	-509.0	NM_008705	18103.0	Mm.1260	NM_008705	ENSMUSG00000020857	Nme2	NM23-H2|NM23B|nm23-M2	NME/NM23 nucleoside diphosphate kinase 2	protein-coding	48.5	60.5	43.5	21.5	58.0	45.0
Merged-chr3-88606526-2	chr3	88606026	88607026	+	732.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9681.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	3.0	13.5	5.5	10.0	35.0	23.0
Merged-chr9-107747097-2	chr9	107746597	107747597	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153190, intron 16 of 23)	B1_Mur2|SINE|Alu	23905.0	NM_148930	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	9.5	1.5	3.0	4.5	8.5	7.0
Merged-chr7-90303492-2	chr7	90302992	90303992	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040085, intron 1 of 18)	intron (NM_001040085, intron 1 of 18)	1137.0	NR_110348	83671.0	Mm.26751	NM_031394	ENSMUSG00000030616	Sytl2	AI266830|Slp2|mKIAA1597	synaptotagmin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-22168705-2	chr18	22168205	22169205	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027616, intron 1 of 22)	intron (NM_027616, intron 1 of 22)	2691.0	NM_027616	70950.0	Mm.235716	NM_027616	ENSMUSG00000024306	Ccdc178	4921528I01Rik	coiled coil domain containing 178	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80545475-2	chr10	80544975	80545975	+	732.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_025852, exon 7 of 15)	exon (NM_025852, exon 7 of 15)	-6351.0	NM_026094	67331.0	Mm.52511	NM_026094	ENSMUSG00000003341	Atp8b3	1700042F02Rik|1700056N23Rik|ATPIK|SAPLT	ATPase, class I, type 8B, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91691696-2	chr16	91691196	91692196	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026994, intron 10 of 11)	B1_Mus1|SINE|Alu	2798.0	NR_040389	100038392.0	Mm.440384	NR_040389	ENSMUSG00000085169	Gm10785	-	predicted gene 10785	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139195159-2	chr4	139194618	139195618	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	1007.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	26.5	51.0	22.0	25.5	41.0	24.0
Merged-chr17-29392885-2	chr17	29392385	29393385	+	732.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31971.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99394494-2	chr12	99393994	99394994	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 1 of 5)	intron (NM_183186, intron 1 of 5)	55580.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126198376-2	chr7	126197876	126198876	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 1 of 23)	L1MB2|LINE|L1	2125.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113678410-2	chr6	113677910	113678910	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 7 of 11)	intron (NM_001113553, intron 7 of 11)	-18640.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-133083957-2	chr1	133083457	133084457	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001099276, intron 12 of 32)	intron (NM_001099276, intron 12 of 32)	37945.0	NM_001099276	240752.0	Mm.387308	NM_001099276	ENSMUSG00000026447	Pik3c2b	C330011J12Rik|Gm199|PI3K-C2beta|PI3KC2beta	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61654068-2	chr11	61653568	61654568	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027817, intron 1 of 4)	intron (NM_027817, intron 1 of 4)	747.0	NM_027817	71520.0	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167385594-3	chr2	167385128	167386128	+	732.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36082.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-169355102-1	chr2	169354602	169355602	+	732.0	f1_c57bl6.idr	Intergenic	Intergenic	-278544.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0.0	0.0	3.5	0.0	0.0	1.0
Merged-chr17-6773876-1	chr17	6773376	6774376	+	732.0	f1_c57bl6.idr	intron (NM_009510, intron 1 of 12)	intron (NM_009510, intron 1 of 12)	8904.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	1.5	8.0	10.5	2.0	7.0	5.0
Merged-chr11-62553266-2	chr11	62552762	62553762	+	732.0	f0_balb.idr|f0_c57.idr	TTS (NR_002875)	TTS (NR_002875)	1531.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49320017-2	chr16	49319517	49320517	+	732.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	262531.0	NM_001166210	667772.0	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68736776-2	chr10	68736276	68737276	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	13030.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136259151-2	chr5	136258651	136259651	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291238, intron 14 of 22)	intron (NM_001291238, intron 14 of 22)	-14211.0	NM_018825	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94243358-2	chr11	94242858	94243858	+	732.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181819)	promoter-TSS (NM_181819)	-779.0	NM_181819	278507.0	Mm.342216	NM_181819	ENSMUSG00000044177	Wfikkn2	2610304F08Rik|AY100450|Gasp1|WFIKKNRP	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131207683-1	chr2	131207183	131208183	+	732.0	f1_c57bl6.idr	Intergenic	Intergenic	-2677.0	NM_001291032	69596.0	Mm.2937	NM_027129	ENSMUSG00000068264	Ap5s1	0610038L13Rik|2310035K24Rik|AW060727|sigma5	adaptor-related protein 5 complex, sigma 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-29289034-2	chr12	29288524	29289524	+	732.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	147095.0	NR_154987	102633526.0	Mm.134217	NR_154987		Gm31333	-	predicted gene, 31333	ncRNA	22.0	52.5	18.0	11.0	17.5	13.0
Merged-chr16-78199646-3	chr16	78199146	78200146	+	732.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	55808.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34851414-1	chr17	34850914	34851914	+	732.0	f1_c57bl6.idr	intron (NM_138580, intron 2 of 10)	B1F|SINE|Alu	1023.0	NM_001045864	27632.0	Mm.653	NM_138580	ENSMUSG00000024369	Nelfe	D17H6S45|NELF-E|RD|Rdbp	negative elongation factor complex member E, Rdbp	protein-coding	3.0	5.0	6.5	7.5	26.0	5.5
Merged-chr2-30448890-2	chr2	30448390	30449390	+	732.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTG)n|Simple_repeat|Simple_repeat	25309.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40723021-1	chr9	40722521	40723521	+	732.0	f0_balb.idr	intron (NM_133733, intron 1 of 6)	MLT1B|LTR|ERVL-MaLR	37057.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	0.0	5.0	0.5	0.0	8.5	8.0
Merged-chr16-32614223-1	chr16	32613723	32614723	+	732.0	f1_balb.idr	intron (NM_001357298, intron 2 of 18)	intron (NM_001357298, intron 2 of 18)	5101.0	NM_001357298	22042.0	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57973068-2	chr15	57972568	57973568	+	732.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	-12835.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90660147-1	chr5	90659647	90660647	+	732.0	f1_balb.idr	Intergenic	B4A|SINE|B4	-19620.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	0.0	0.0	0.5	0.0	1.0	5.5
Merged-chr4-136032630-1	chr4	136032130	136033130	+	732.0	f1_balb.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-10981.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	4.0	7.0	5.5	1.0	2.0	2.0
Merged-chr9-118726207-1	chr9	118725707	118726707	+	732.0	f1_balb.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	14515.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.5	4.5	2.5	0.5	5.0	11.5
Merged-chr5-138225377-2	chr5	138224877	138225877	+	732.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013773)	promoter-TSS (NM_001013773)	-527.0	NM_001013773	381680.0	Mm.156846	NM_001013773	ENSMUSG00000047592	Nxpe5	-	neurexophilin and PC-esterase domain family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-14147264-2	chr9	14146764	14147764	+	732.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-129037.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158360929-2	chr2	158360429	158361429	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_015463, intron 2 of 5)	intron (NR_015463, intron 2 of 5)	580.0	NR_015463	68108.0	Mm.119198	NR_015463		Snhg17	9430008C03Rik	small nucleolar RNA host gene 17	ncRNA	0.0	3.0	0.5	0.0	7.0	1.0
Merged-chr18-74217855-2	chr18	74217355	74218355	+	732.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028868, exon 4 of 15)	exon (NM_028868, exon 4 of 15)	1643.0	NM_028868	74322.0	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr6-67160295-2	chr6	67159795	67160795	+	732.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-106684.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36727233-2	chr5	36726733	36727733	+	732.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21446.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	31.5	39.5	37.5	30.5	46.0	41.0
Merged-chr4-108762189-1	chr4	108761689	108762689	+	732.0	f0_balb.idr	intron (NM_001347163, intron 1 of 18)	intron (NM_001347163, intron 1 of 18)	18899.0	NM_001347163	230597.0	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	1.5	3.0	7.0	8.0	26.5	22.0
Merged-chr11-70438537-2	chr11	70438037	70439037	+	732.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_106064)	TTS (NR_106064)	282.0	NR_106064	102465670.0		NR_106064	ENSMUSG00000099109	Mir7115	Gm27902|mmu-mir-7115	microRNA 7115	ncRNA	0.5	7.5	4.0	1.5	6.0	1.0
Merged-chr16-4611787-2	chr16	4611287	4612287	+	732.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_031184, exon 6 of 7)	exon (NM_031184, exon 6 of 7)	13159.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97207310-2	chr3	97206810	97207810	+	732.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029933, exon 9 of 10)	exon (NM_029933, exon 9 of 10)	20054.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20696768-1	chr10	20696268	20697268	+	732.0	f0_balb.idr	intron (NM_013875, intron 1 of 12)	intron (NM_013875, intron 1 of 12)	28310.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.0	5.0	2.5	0.0	5.0	2.5
Merged-chr11-114793716-2	chr11	114793216	114794216	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028055, intron 2 of 2)	intron (NM_028055, intron 2 of 2)	2176.0	NM_028055	72014.0	Mm.38347	NM_028055	ENSMUSG00000000202	Btbd17	1500005I02Rik|Tango10a	BTB (POZ) domain containing 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120599502-1	chr11	120599002	120600002	+	732.0	f1_balb.idr	intron (NM_001038230, intron 2 of 2)	B1_Mus1|SINE|Alu	970.0	NM_001038230	66156.0	Mm.21645	NM_025389	ENSMUSG00000025135	Anapc11	1110011I19Rik|R75218	anaphase promoting complex subunit 11	protein-coding	0.5	0.0	5.0	1.0	1.5	3.0
Merged-chr5-35362037-3	chr5	35361528	35362528	+	732.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_046060, exon 1 of 4)	non-coding (NR_046060, exon 1 of 4)	475.0	NR_046060	74429.0	Mm.399502	NR_046060	ENSMUSG00000106762	4930478P22Rik	4933405A14Rik	RIKEN cDNA 4930478P22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141640388-2	chr4	141639914	141640914	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 5 of 18)	intron (NM_001347237, intron 5 of 18)	-16580.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	15.0	26.0	7.0	6.0	4.0	6.5
Merged-chr19-8941105-2	chr19	8940605	8941605	+	732.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011842)	promoter-TSS (NM_011842)	-815.0	NM_011842	23942.0	Mm.25339	NM_011842	ENSMUSG00000071646	Mta2	AW550797|Mata1l1|Mta1l1|mmta2	metastasis-associated gene family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8316302-1	chr12	8315802	8316802	+	732.0	f1_c57bl6.idr	intron (NM_021429, intron 1 of 6)	intron (NM_021429, intron 1 of 6)	2869.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0.0	0.0	0.0	1.0	2.0	0.5
Merged-chr11-118249916-2	chr11	118249416	118250416	+	732.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1324.0	NM_011180	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-107101313-2	chr8	107100813	107101813	+	732.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3-int|LTR|ERVL-MaLR	-4768.0	NR_104410	21750.0	Mm.6402	NM_009353	ENSMUSG00000031921	Terf2	TRF2	telomeric repeat binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-72833482-1	chr17	72832982	72833982	+	732.0	f0_balb.idr	Intergenic	Intergenic	-3146.0	NM_027166	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	2.5	9.5	4.5	2.5	9.5	3.0
Merged-chr4-72398584-2	chr4	72398084	72399084	+	732.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	197340.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-58985313-3	chr4	58984807	58985807	+	732.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025968, intron 1 of 9)	intron (NM_025968, intron 1 of 9)	1771.0	NM_025968	67103.0	Mm.34497	NM_025968	ENSMUSG00000028378	Ptgr1	2510002C21Rik|Ltb4dh|Zadh3	prostaglandin reductase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8756046-2	chr19	8755546	8756546	+	732.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001167799)	TTS (NM_001167799)	923.0	NR_132423	102640359.0	Mm.440831	NR_132423		1700023D09Rik	AV208457	RIKEN cDNA 1700023D09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120371147-2	chr8	120370647	120371647	+	732.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117719.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180946998-2	chr1	180946498	180947498	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144794, intron 2 of 22)	intron (NM_144794, intron 2 of 22)	4480.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	1.5	0.0	2.0	3.5	5.5	1.5
Merged-chr6-84165853-2	chr6	84165353	84166353	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 40 of 54)	intron (NM_001077694, intron 40 of 54)	146467.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.0	1.5	0.0	0.0	1.5	0.0
Merged-chr4-147906437-2	chr4	147905937	147906937	+	732.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1528.0	NM_001285921	170731.0	Mm.154312	NM_133201	ENSMUSG00000029020	Mfn2	D630023P19Rik|Fzo	mitofusin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-121807776-1	chr2	121807276	121808276	+	732.0	f1_c57bl6.idr	promoter-TSS (NM_172673)	promoter-TSS (NM_172673)	-719.0	NM_172673	228564.0	Mm.121514	NM_172673	ENSMUSG00000027238	Frmd5	1500032A09Rik|A930004K21Rik|R75430	FERM domain containing 5	protein-coding	2.5	0.5	0.5	9.0	5.0	0.0
Merged-chr10-80993964-2	chr10	80993464	80994464	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	7401.0	NM_001038655	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88195370-1	chr17	88194870	88195870	+	732.0	f1_c57bl6.idr	Intergenic	ERVL-B4-int|LTR|ERVL	69858.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr12-33136676-2	chr12	33136176	33137176	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_015602, intron 3 of 5)	intron (NR_015602, intron 3 of 5)	10910.0	NR_015602	320046.0	Mm.208337	NR_015602	ENSMUSG00000052125	F730043M19Rik	-	RIKEN cDNA F730043M19 gene	ncRNA	5.0	4.5	11.0	5.0	1.5	10.5
Merged-chr13-13531624-2	chr13	13531124	13532124	+	732.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58785.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108204156-4	chr3	108203635	108204635	+	731.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175183, intron 10 of 11)	intron (NM_175183, intron 10 of 11)	-3301.0	NM_001081320	72023.0	Mm.246391	NM_028061	ENSMUSG00000048796	Cyb561d1	1600010M23Rik|AI605489|AW457162	cytochrome b-561 domain containing 1	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr9-120052444-3	chr9	120051950	120052950	+	731.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009987, intron 1 of 1)	intron (NM_009987, intron 1 of 1)	15846.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96760195-3	chr11	96759694	96760694	+	731.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177899)	TTS (NM_001177899)	17361.0	NM_028965	74479.0	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	0.0	6.5	6.5	12.5	15.0	0.5
Merged-chr17-44831390-3	chr17	44830889	44831889	+	731.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178652, intron 2 of 11)	RMER17C|LTR|ERVK	-16592.0	NR_073392	12393.0	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80417235-2	chr11	80416731	80417731	+	731.916687	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6C|LTR|ERVK	-11384.0	NM_178616	69077.0	Mm.260539	NM_178616	ENSMUSG00000017428	Psmd11	1700089D09Rik|1810019E17Rik|2610024G20Rik|2810055C24Rik|C78232|P44.5|S9	proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	protein-coding	0.0	15.0	0.0	0.0	2.5	0.0
Merged-chr11-37046863-3	chr11	37046364	37047364	+	731.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-102623.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.0	1.5	2.5	0.0	0.0	0.0
Merged-chr4-132624412-4	chr4	132623894	132624894	+	731.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-14652.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	34.5	62.5	55.0	6.0	14.5	25.5
Merged-chr1-135585229-3	chr1	135584721	135585721	+	731.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_173437, exon 1 of 29)	exon (NM_173437, exon 1 of 29)	134.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46604486-4	chr18	46603977	46604977	+	731.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010120, intron 2 of 2)	intron (NM_010120, intron 2 of 2)	6773.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99341458-4	chr5	99340920	99341920	+	731.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	RMER17C|LTR|ERVK	-88493.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100931681-5	chr7	100931202	100932202	+	731.866699	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081116, exon 1 of 21)	exon (NM_001081116, exon 1 of 21)	459.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	0.0	7.0	6.0	0.0	0.0	0.0
Merged-chr4-53303726-3	chr4	53303213	53304213	+	731.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33481.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56357719-4	chr17	56357195	56358195	+	731.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172132, intron 5 of 22)	intron (NM_172132, intron 5 of 22)	31645.0	NM_001357909	193796.0	Mm.45047	NM_172132	ENSMUSG00000024201	Kdm4b	4732474L06Rik|Jmjd2b	lysine (K)-specific demethylase 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-68368033-3	chr2	68367539	68368539	+	731.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 7 of 17)	intron (NM_016866, intron 7 of 17)	103942.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6247985-4	chr4	6247589	6248589	+	731.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27542.0	NM_007824	13122.0	Mm.57029	NM_007824	ENSMUSG00000028240	Cyp7a1	-	cytochrome P450, family 7, subfamily a, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77509812-4	chr10	77509306	77510306	+	731.825012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133998, intron 2 of 5)	intron (NM_133998, intron 2 of 5)	6007.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-46981291-4	chr14	46980776	46981776	+	731.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	-20064.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	7.0	24.5	5.0	16.5	1.0	10.5
Merged-chr16-87507880-3	chr16	87507385	87508385	+	731.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11812.0	NR_040375	414095.0	Mm.166361	NR_040375	ENSMUSG00000093606	B130034C11Rik	-	RIKEN cDNA B130034C11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124484269-3	chr5	124483825	124484825	+	731.761902	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029532, intron 1 of 1)	intron (NM_029532, intron 1 of 1)	1170.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100605142-2	chr15	100604682	100605682	+	731.75	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-5198.0	NM_001304965	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	4.5	37.0	19.0	12.5	53.0	13.5
Merged-chr8-70894486-2	chr8	70893985	70894985	+	731.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029751)	TTS (NM_029751)	1085.0	NR_106034	102465984.0		NR_106034	ENSMUSG00000098710	Mir7067	Gm28031|mmu-mir-7067	microRNA 7067	ncRNA	0.0	27.0	0.0	14.0	1.5	6.5
Merged-chr15-73183608-2	chr15	73183108	73184108	+	731.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	1339.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54613276-2	chr13	54612776	54613776	+	731.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1903.0	NM_001347512	74325.0	Mm.290026	NM_028870	ENSMUSG00000047547	Cltb	2310046E19Rik|lcb	clathrin, light polypeptide (Lcb)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30740993-2	chr16	30740493	30741493	+	731.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	141270.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0.0	0.0	0.0	2.0	0.0	0.0
Merged-chr14-31129716-2	chr14	31129216	31130216	+	731.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308464)	promoter-TSS (NM_001308464)	-786.0	NM_001308464	66487.0	Mm.379116	NM_001308091	ENSMUSG00000058351	Smim4	2010107H07Rik|Gm41122	small integral membrane protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-57880188-2	chr18	57879691	57880691	+	731.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_009194, intron 1 of 26)	B1_Mur2|SINE|Alu	1513.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	0.0	4.0	0.5	0.0	0.0	0.5
Merged-chr15-90634033-2	chr15	90633536	90634536	+	731.75	f0_balb.idr|f1_balb.idr	intron (NM_001357979, intron 3 of 18)	MTA_Mm|LTR|ERVL-MaLR	45352.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	3.0	7.5	4.5	6.0	8.0	10.0
Merged-chr5-113956690-4	chr5	113956181	113957181	+	731.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198109, intron 9 of 14)	B3|SINE|B2	37076.0	NM_198109	231637.0	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot protein phosphatase 1	protein-coding	0.0	0.0	0.0	0.5	0.0	1.5
Merged-chr4-9628343-2	chr4	9627843	9628843	+	731.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177856)	TTS (NM_001177856)	15374.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88635053-2	chr8	88634527	88635527	+	731.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_027840, intron 1 of 3)	intron (NM_027840, intron 1 of 3)	1101.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	90.0	149.5	118.5	20.5	38.5	29.0
Merged-chr7-80829782-4	chr7	80829337	80830337	+	731.6875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-26506.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	14.5	58.5	43.5	36.5	91.0	110.0
Merged-chr15-25834577-3	chr15	25834055	25835055	+	731.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8743.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69516344-2	chr11	69515844	69516844	+	731.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 9 of 85)	intron (NM_001081330, intron 9 of 85)	32764.0	NM_001081330	327954.0	Mm.247478	NM_177617	ENSMUSG00000005237	Dnah2	2900022L05Rik|4930564A01|D130094J20|D330014H01Rik|Dnahc2|Dnhd3	dynein, axonemal, heavy chain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-105287937-3	chr14	105287532	105288532	+	731.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029561, intron 2 of 7)	(TATATG)n|Simple_repeat|Simple_repeat	29359.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	0.0	0.0	3.5	2.0	0.5	1.5
Merged-chr5-76244575-3	chr5	76244081	76245081	+	731.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007715, intron 11 of 22)	intron (NM_007715, intron 11 of 22)	58921.0	NM_001305222	12753.0	Mm.3552	NM_007715	ENSMUSG00000029238	Clock	5330400M04Rik|KAT13D	circadian locomotor output cycles kaput	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6995445-3	chr19	6994952	6995952	+	731.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027351)	promoter-TSS (NR_027351)	585.0	NM_026675	68323.0	Mm.49041	NM_026675	ENSMUSG00000037349	Nudt22	0610006K04Rik|AI851793|AW545547	nudix (nucleoside diphosphate linked moiety X)-type motif 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70644237-3	chr8	70643763	70644763	+	731.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-11807.0	NM_001330687	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	12.5	28.5	24.5	3.5	1.5	8.0
Merged-chr10-79675855-2	chr10	79675355	79676355	+	731.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_148934, exon 2 of 2)	exon (NM_148934, exon 2 of 2)	-6340.0	NM_001359818	216150.0	Mm.21981	NM_177613	ENSMUSG00000020307	Cdc34	AI327276|E2-CDC34|UBE2R1	cell division cycle 34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101845190-2	chr5	101844690	101845690	+	731.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_172882, exon 64 of 67)	exon (NM_172882, exon 64 of 67)	80060.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100699203-2	chr11	100698703	100699703	+	731.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_030150, intron 8 of 12)	intron (NM_030150, intron 8 of 12)	5068.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44493102-4	chr9	44492569	44493569	+	731.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357490, intron 1 of 7)	intron (NM_001357490, intron 1 of 7)	-6067.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0.5	0.5	0.0	0.5	0.5	0.0
Merged-chr10-122799694-4	chr10	122799017	122800017	+	731.660706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 2 of 9)	intron (NM_001110218, intron 2 of 9)	120202.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	5.0	0.0	16.5	7.0	10.0	9.0
Merged-chr9-89211443-3	chr9	89210921	89211921	+	731.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359993)	promoter-TSS (NM_001359993)	37.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31468004-3	chr15	31467496	31468496	+	731.600037	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172606, intron 22 of 25)	MTB|LTR|ERVL-MaLR	-14307.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21379115-3	chr5	21378600	21379600	+	731.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008013)	TTS (NM_008013)	6427.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98354204-3	chr13	98353764	98354764	+	731.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008242)	promoter-TSS (NM_008242)	19.0	NM_008242	15229.0	Mm.347441	NM_008242	ENSMUSG00000078302	Foxd1	AI385632|BF-2|FREAC4|Hfh10|Hfhbf2	forkhead box D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-8092717-4	chr14	8092201	8093201	+	731.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001348727)	TTS (NM_001348727)	-5510.0	NM_145458	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5840231-2	chr17	5839731	5840731	+	731.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1149.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-117996834-2	chr3	117996334	117997334	+	731.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127898.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155895401-1	chr4	155894901	155895901	+	731.5	f0_balb.idr	intron (NM_207223, intron 1 of 24)	intron (NM_207223, intron 1 of 24)	3526.0	NM_207223	140500.0	Mm.219591	NM_207223	ENSMUSG00000029033	Acap3	Centb5|Kiaa1716-hp|mKIAA1716	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	protein-coding	3.5	15.5	7.0	23.0	58.5	20.0
Merged-chr8-13413567-2	chr8	13413067	13414067	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011881, intron 5 of 6)	intron (NM_011881, intron 5 of 6)	8486.0	NM_011881	24013.0	Mm.257501	NM_011881	ENSMUSG00000031450	Grk1	Gprk1|Rhok|Rk	G protein-coupled receptor kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53360323-2	chr18	53359823	53360823	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 3 of 6)	intron (NM_029394, intron 3 of 6)	57684.0	NM_008908	19038.0	Mm.4587	NM_008908	ENSMUSG00000024538	Ppic	CyP-20c	peptidylprolyl isomerase C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105871153-2	chr5	105870653	105871653	+	731.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-5415.0	NR_030777	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-129954405-2	chr5	129953905	129954905	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001327, intron 1 of 1)	intron (NM_001001327, intron 1 of 1)	12296.0	NM_027121	69568.0	Mm.288718	NM_027121	ENSMUSG00000066735	Vkorc1l1	2310024K08Rik	vitamin K epoxide reductase complex, subunit 1-like 1	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr10-128938578-2	chr10	128938078	128939078	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008398, intron 1 of 24)	intron (NM_008398, intron 1 of 24)	4765.0	NM_001330160	16404.0	Mm.179747	NM_008398	ENSMUSG00000025348	Itga7	[a]7|alpha7	integrin alpha 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87452142-3	chr6	87451641	87452641	+	731.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23147.0	NM_009756	12154.0	Mm.483321	NM_009756	ENSMUSG00000030046	Bmp10	b2b2711Clo	bone morphogenetic protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57864543-2	chr9	57864048	57865048	+	731.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-30314.0	NM_019689	56380.0	Mm.425588	NM_019689	ENSMUSG00000004661	Arid3b	Bdp|Dri2	AT rich interactive domain 3B (BRIGHT-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25137252-2	chr17	25136706	25137706	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317404, intron 1 of 24)	intron (NM_001317404, intron 1 of 24)	575.0	NM_001317404	26373.0	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	35.5	94.0	51.5	12.5	32.5	29.5
Merged-chr8-109962211-2	chr8	109961711	109962711	+	731.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_212447)	promoter-TSS (NM_212447)	-6.0	NM_028584	73608.0	Mm.86833	NM_028584	ENSMUSG00000001672	Marveld3	1810006A16Rik|AI642133|Marvd3|Mrvldc3	MARVEL (membrane-associating) domain containing 3	protein-coding	0.0	2.0	0.0	0.0	2.0	0.0
Merged-chr11-103322556-2	chr11	103322056	103323056	+	731.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B2|LTR|ERVK	22146.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-31948089-2	chr12	31947589	31948589	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177993, intron 1 of 8)	intron (NM_177993, intron 1 of 8)	2156.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-100487237-2	chr3	100486737	100487737	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142952, intron 1 of 1)	intron (NM_001142952, intron 1 of 1)	1955.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-11450064-4	chr10	11449558	11450558	+	731.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010146, intron 3 of 3)	intron (NM_010146, intron 3 of 3)	106613.0	NM_010146	13853.0	Mm.89946	NM_010146	ENSMUSG00000055493	Epm2a	TG-B|Tg(TcraK,TcrbK)TG-BFlv	epilepsy, progressive myoclonic epilepsy, type 2 gene alpha	protein-coding	0.0	0.0	1.0	2.0	1.5	2.0
Merged-chr8-119833156-2	chr8	119832656	119833656	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	7423.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97402806-2	chr11	97402306	97403306	+	731.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40255.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-24120709-2	chr18	24120209	24121209	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172625, intron 1 of 4)	MTE-int|LTR|ERVL-MaLR	1110.0	NM_172625	225280.0	Mm.258973	NM_172625	ENSMUSG00000047989	Ino80c	D030070L09Rik	INO80 complex subunit C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73897010-2	chr17	73896510	73897510	+	731.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011723, exon 30 of 36)	exon (NM_011723, exon 30 of 36)	53186.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166097619-2	chr2	166097119	166098119	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252579, intron 3 of 20)	ORR1E|LTR|ERVL-MaLR	57666.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-79930153-2	chr7	79929653	79930653	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027420, intron 2 of 5)	MIRb|SINE|MIR	5111.0	NM_027420	70420.0	Mm.34266	NM_027420	ENSMUSG00000039043	Arpin	2610034B18Rik	actin-related protein 2/3 complex inhibitor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-15197174-2	chr18	15196674	15197674	+	731.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45728.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191272952-3	chr1	191272486	191273486	+	731.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45132.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23261603-2	chr11	23261103	23262103	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035226, intron 2 of 25)	B2_Mm1a|SINE|B2	5562.0	NM_134014	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-14381984-2	chr1	14381484	14382484	+	731.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-71785.0	NM_010164	14048.0	Mm.250185	NM_010164	ENSMUSG00000025932	Eya1	bor	EYA transcriptional coactivator and phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr13-49056975-2	chr13	49056475	49057475	+	731.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029361, exon 23 of 28)	exon (NM_029361, exon 23 of 28)	88863.0	NR_015601	68128.0	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61458847-2	chr18	61458347	61459347	+	731.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25760.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81334747-2	chr10	81334247	81335247	+	731.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009325, exon 4 of 4)	3' UTR (NM_009325, exon 4 of 4)	6044.0	NM_001277265	21390.0	Mm.4545	NM_009325	ENSMUSG00000034881	Tbxa2r	TP|TXA2-R	thromboxane A2 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21369405-2	chr11	21368905	21369905	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290634, intron 1 of 9)	intron (NM_001290634, intron 1 of 9)	1224.0	NM_139297	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	2.5	26.0	6.0	2.0	22.5	24.5
Merged-chr7-100873597-2	chr7	100873097	100874097	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081116, intron 20 of 20)	intron (NM_001081116, intron 20 of 20)	8812.0	NR_037289	100526508.0		NR_037289	ENSMUSG00000093296	Mir3102	mmu-mir-3102	microRNA 3102	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36112977-2	chr1	36112463	36113463	+	731.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14-int|LTR|ERV1	31350.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100108850-2	chr12	100108350	100109350	+	731.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3481.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-20830859-2	chr1	20830359	20831359	+	731.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10547.0	NM_008563	17215.0	Mm.4502	NM_008563	ENSMUSG00000041859	Mcm3	AL033361|C80350|Mcmd|P1|P1-MCM3|p1.m	minichromosome maintenance complex component 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86046678-2	chr1	86046178	86047178	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001144993, intron 1 of 2)	intron (NM_001144993, intron 1 of 2)	815.0	NM_001144992	72792.0	Mm.54981	NM_001144992	ENSMUSG00000026227	2810459M11Rik	-	RIKEN cDNA 2810459M11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172205478-2	chr1	172204899	172205899	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001329871, intron 1 of 3)	intron (NM_001329871, intron 1 of 3)	1405.0	NM_001329871	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	27.5	17.0	40.5	20.0	26.5	32.5
Merged-chr5-144880287-2	chr5	144879787	144880787	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038627, intron 17 of 17)	intron (NM_001038627, intron 17 of 17)	16529.0	NR_106006	102465629.0		NR_106006	ENSMUSG00000098822	Mir7039	Gm27824|mmu-mir-7039	microRNA 7039	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51418406-2	chr3	51417906	51418906	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053089, intron 1 of 19)	intron (NM_053089, intron 1 of 19)	2390.0	NM_053089	74838.0	Mm.275281	NM_053089	ENSMUSG00000063273	Naa15	5730450D16Rik|6330400I15|ASTBDN|Narg1|Tbdn-1|mNAT1	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24936154-2	chr2	24935654	24936654	+	731.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162485)	promoter-TSS (NM_001162485)	-873.0	NM_178408	215705.0	Mm.45275	NM_178408	ENSMUSG00000026972	Arrdc1	AI957342|BC004091	arrestin domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-68958002-2	chr9	68957488	68958488	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013646, intron 1 of 10)	intron (NM_013646, intron 1 of 10)	192642.0	NR_033299	320440.0	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	0.0	5.5	3.0	3.5	0.0	2.5
Merged-chr5-32121667-2	chr5	32121167	32122167	+	731.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14805.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-119872430-2	chr7	119871930	119872930	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163703, intron 1 of 2)	intron (NM_001163703, intron 1 of 2)	23028.0	NM_173408	233805.0	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92526849-2	chr5	92526349	92527349	+	731.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B2|LTR|ERVL	-21192.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98737528-3	chr12	98736982	98737982	+	731.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146199)	promoter-TSS (NM_001146199)	-77.0	NM_001146199	24000.0	Mm.4420	NM_011877	ENSMUSG00000021009	Ptpn21	PTPD1|PTPRL10	protein tyrosine phosphatase, non-receptor type 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66899890-4	chr15	66899407	66900407	+	731.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018865, intron 1 of 4)	intron (NM_018865, intron 1 of 4)	8514.0	NM_018865	22402.0	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-105467403-3	chr11	105466905	105467905	+	731.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10670.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-150496834-3	chr1	150496339	150497339	+	731.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-30674.0	NM_021400	96875.0	Mm.174256	NM_021400	ENSMUSG00000006014	Prg4	CACP|DOL54|JCAP|MSF|SZP|lubricin	proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-72970241-3	chr9	72969757	72970757	+	731.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163725, intron 5 of 6)	intron (NM_001163725, intron 5 of 6)	11472.0	NM_001163725	67685.0	Mm.31817	NM_026314	ENSMUSG00000092192	Dyx1c1	1700010I24Rik|Dnaaf4|EKN1|b2b811.1Clo|b2b811Clo	dyslexia susceptibility 1 candidate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-117222086-3	chr13	117221580	117222580	+	731.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010330, intron 1 of 8)	intron (NM_010330, intron 1 of 8)	1507.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64326332-7	chr5	64325731	64326731	+	731.428589	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 14 of 18)	intron (NM_001289514, intron 14 of 18)	95874.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121501675-4	chr5	121501164	121502164	+	731.424988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172125, exon 1 of 1)	exon (NM_172125, exon 1 of 1)	1316.0	NM_172125	280667.0	Mm.444773	NM_172125	ENSMUSG00000062438	Adam1b	Adam1|Ftna	a disintegrin and metallopeptidase domain 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-103332472-2	chr12	103331902	103332902	+	731.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 6 of 9)	MIRb|SINE|MIR	17443.0	NM_001195726	100504156.0	Mm.425749	NM_001195726	ENSMUSG00000096753	Fam181a	EG544888	family with sequence similarity 181, member A	protein-coding	0.5	2.5	1.0	0.5	3.0	0.5
Merged-chr8-83596597-3	chr8	83596099	83597099	+	731.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12|LTR|ERVK	-2108.0	NM_134118	106529.0	Mm.352239	NM_027179	ENSMUSG00000031708	Tecr	2410016D23Rik|A230102P12Rik|AI173355|D17Ertd178e|Gpsn2|SC2	trans-2,3-enoyl-CoA reductase	protein-coding	2.0	16.5	16.0	1.0	12.0	12.0
Merged-chr9-55544199-3	chr9	55543693	55544693	+	731.377747	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027397, exon 4 of 6)	exon (NM_027397, exon 4 of 6)	3044.0	NM_027397	104360.0	Mm.273996	NM_027397	ENSMUSG00000032318	Isl2	3110001N10Rik	insulin related protein 2 (islet 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36630889-2	chr16	36630390	36631390	+	731.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	MTEa|LTR|ERVL-MaLR	35187.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	15.0	1.5	4.0	3.0	5.0
Merged-chr17-46251141-2	chr17	46250641	46251641	+	731.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_145353, exon 7 of 9)	exon (NM_145353, exon 7 of 9)	-3024.0	NM_001111142	224813.0	Mm.70999	NM_001111142	ENSMUSG00000071073	Lrrc73	Gm88	leucine rich repeat containing 73	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85126972-2	chr11	85126472	85127472	+	731.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029934, intron 1 of 33)	intron (NM_001029934, intron 1 of 33)	12983.0	NM_001029934	237898.0	Mm.178524	NM_001029934	ENSMUSG00000000804	Usp32	2900074J03Rik|6430526O11Rik|AW045245	ubiquitin specific peptidase 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-121158560-3	chr7	121158065	121159065	+	731.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139310, intron 27 of 28)	intron (NM_139310, intron 27 of 28)	75127.0	NM_139310	246190.0	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119742798-3	chr2	119742335	119743335	+	731.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_146125, exon 1 of 7)	exon (NM_146125, exon 1 of 7)	498.0	NM_146125	228550.0	Mm.65337	NM_146125	ENSMUSG00000027296	Itpka	-	inositol 1,4,5-trisphosphate 3-kinase A	protein-coding	0.0	5.0	1.5	1.0	0.0	1.0
Merged-chr5-95914835-3	chr5	95914337	95915337	+	731.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42102.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-37272211-3	chr17	37271735	37272735	+	731.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_013819, intron 3 of 7)	intron (NM_013819, intron 3 of 7)	2001.0	NM_013819	14991.0	Mm.14437	NM_013819	ENSMUSG00000016206	H2-M3	H-2M3|Hmt|M3a|MuprM3|MuprM301|MuprM302|R4B2	histocompatibility 2, M region locus 3	protein-coding	1.0	2.5	2.0	6.0	6.5	7.0
Merged-chr4-89124137-3	chr4	89123604	89124604	+	731.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151607, intron 1 of 3)	intron (NR_151607, intron 1 of 3)	4122.0	NR_151607	102637941.0	Mm.366358	NR_151607		Gm12602	-	predicted gene 12602	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4572571-2	chr7	4572071	4573071	+	731.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_207270, intron 7 of 19)	intron (NM_207270, intron 7 of 19)	-25030.0	NM_001360422	53420.0	Mm.358663	NM_016908	ENSMUSG00000004961	Syt5	SytV	synaptotagmin V	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr5-134569324-4	chr5	134568746	134569746	+	731.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2830.0	NR_106087	102465708.0		NR_106087	ENSMUSG00000106323	Mir7228	mmu-mir-7228	microRNA 7228	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3773770-3	chr4	3773261	3774261	+	731.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	L1Md_F3|LINE|L1	58797.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	29.0	7.5	5.5	2.0	4.0	8.0
Merged-chr12-17265528-2	chr12	17265005	17266005	+	731.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1090.0	NM_027959	71853.0	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	6.0	3.5	1.5	3.5	3.5	1.5
Merged-chr17-5628080-3	chr17	5627641	5628641	+	731.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	135541.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103912896-2	chr3	103912388	103913388	+	731.25	f0_balb.idr|f1_balb.idr	TTS (NM_008979)	TTS (NM_008979)	-1232.0	NM_001356557	229675.0	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|KDM9|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	7.5	5.5	6.5	8.5	6.5	2.5
Merged-chr16-32161119-2	chr16	32160619	32161619	+	731.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347181, intron 1 of 2)	intron (NM_001347181, intron 1 of 2)	4475.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5806974-2	chr17	5806474	5807474	+	731.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7484.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120191373-1	chr10	120190873	120191873	+	731.25	f0_c57.idr	intron (NM_001359184, intron 1 of 11)	intron (NM_001359184, intron 1 of 11)	10224.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101968440-2	chr7	101967981	101968981	+	731.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1362.0	NM_133947	101706.0	Mm.27259	NM_133947	ENSMUSG00000066306	Numa1	6720401E04Rik|AA764025|AL022610|AU014979|NuMA	nuclear mitotic apparatus protein 1	protein-coding	0.0	3.5	0.0	0.0	1.5	0.0
Merged-chr2-127337415-6	chr2	127336954	127337954	+	731.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010090, exon 3 of 4)	exon (NM_010090, exon 3 of 4)	-1185.0	NM_172539	215095.0	Mm.31313	NM_172539	ENSMUSG00000050468	Astl	7420700F21|C87576|Sas1b	astacin-like metalloendopeptidase (M12 family)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81355585-3	chr15	81355066	81356066	+	731.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011399, intron 1 of 8)	B3|SINE|B2	5199.0	NM_011399	20524.0	Mm.222536	NM_011399	ENSMUSG00000022404	Slc25a17	34kDa|47kDa|PMP34|Pmp47	solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10940942-3	chr19	10940438	10941438	+	731.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023731)	TTS (NM_023731)	3778.0	NM_009962	14764.0	Mm.470721	NM_009962	ENSMUSG00000034117	Ptgdr2	Crth2|Gpr44|Grp45	prostaglandin D2 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-43987637-4	chr14	43987128	43988128	+	731.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	18790.0	NM_001011876	630952.0		NM_001011876	ENSMUSG00000072598	Ang6	EG630952	angiogenin, ribonuclease A family, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-105316162-4	chr13	105315637	105316637	+	731.174988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21652.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-89084837-3	chr11	89084345	89085345	+	731.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033266, intron 2 of 3)	intron (NM_001033266, intron 2 of 3)	11004.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	14.5	1.0	7.5	3.5	11.5	6.5
Merged-chr5-135544585-3	chr5	135544080	135545080	+	731.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	542.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-85003364-2	chr10	85002864	85003864	+	731.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_183172, intron 9 of 9)	intron (NM_183172, intron 9 of 9)	85751.0	NM_183172	237422.0	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81413564-2	chr10	81413064	81414064	+	731.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 2 of 8)	intron (NM_026756, intron 2 of 8)	2733.0	NR_106141	102465778.0		NR_106141	ENSMUSG00000105379	Mir1191b	mmu-mir-1191b	microRNA 1191b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62342533-2	chr9	62342033	62343033	+	731.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 1 of 6)	CpG	1190.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95634482-2	chr3	95633982	95634982	+	731.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9502.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	10.0	12.0	14.5	11.0	38.0	14.0
Merged-chr13-81235546-2	chr13	81235046	81236046	+	731.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 85 of 89)	intron (NM_054053, intron 85 of 89)	271472.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39443815-2	chr1	39443315	39444315	+	731.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357521, intron 1 of 19)	intron (NM_001357521, intron 1 of 19)	34932.0	NM_018775	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24538866-2	chr7	24538366	24539366	+	731.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153134)	TTS (NM_153134)	7139.0	NM_001037143	641361.0	Mm.333661	NM_001037143	ENSMUSG00000011632	Pinlyp	2310033E01Rik	phospholipase A2 inhibitor and LY6/PLAUR domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-3236117-2	chr16	3235607	3236607	+	731.150024	f0_balb.idr|f1_balb.idr	Intergenic	(CTGTG)n|Simple_repeat|Simple_repeat	-356291.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102462379-2	chr12	102461926	102462926	+	731.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-6708.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	0.0	2.0	2.5	13.0	16.0	4.0
Merged-chr7-44753020-4	chr7	44752512	44753512	+	731.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133945, intron 2 of 14)	ORR1E|LTR|ERVL-MaLR	4383.0	NM_133945	101568.0	Mm.28816	NM_133945	ENSMUSG00000002205	Vrk3	AI428238	vaccinia related kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-36892493-3	chr10	36891984	36892984	+	731.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-82060.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121903946-3	chr14	121903485	121904485	+	731.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 1 of 8)	intron (NM_026861, intron 1 of 8)	11789.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	11.0	3.0	3.0	15.5	12.0	0.0
Merged-chr4-132630092-2	chr4	132629595	132630595	+	731.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-8951.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	25.5	28.0	12.0	3.5	18.5	20.5
Merged-chr4-133194651-2	chr4	133194151	133195151	+	731.083374	f1_balb.idr|f1_c57bl6.idr	exon (NM_153423, exon 8 of 9)	exon (NM_153423, exon 8 of 9)	-1004.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	1.0	3.0	0.0	1.5	3.5	9.5
Merged-chr3-84481221-2	chr3	84480689	84481689	+	731.06665	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033301)	promoter-TSS (NM_001033301)	-750.0	NM_001033301	229474.0	Mm.331107	NM_001033301	ENSMUSG00000041842	Fhdc1	6330505N24Rik|Gm126	FH2 domain containing 1	protein-coding	1.5	0.0	1.5	0.0	0.0	3.5
Merged-chr5-139795091-3	chr5	139794554	139795554	+	731.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010757, intron 1 of 2)	intron (NM_010757, intron 1 of 2)	3518.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	3.5	1.5	0.0	1.5	0.0	0.0
Merged-chr9-96526182-4	chr9	96525676	96526676	+	731.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-47501.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46656867-1	chr19	46656367	46657367	+	731.0	f1_balb.idr	3' UTR (NM_001177812, exon 5 of 5)	3' UTR (NM_001177812, exon 5 of 5)	16133.0	NM_007809	13074.0	Mm.1262	NM_007809	ENSMUSG00000003555	Cyp17a1	Cyp17|p450c17	cytochrome P450, family 17, subfamily a, polypeptide 1	protein-coding	0.0	1.5	1.0	0.0	1.0	0.0
Merged-chr8-83606959-2	chr8	83606459	83607459	+	731.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1216.0	NM_018808	81489.0	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	0.5	30.5	11.0	0.0	7.0	6.5
Merged-chr11-96861139-1	chr11	96860639	96861639	+	731.0	f1_c57bl6.idr	TTS (NM_019877)	TTS (NM_019877)	10746.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	0.0	1.5	2.0	0.0	9.5	4.5
Merged-chr9-85342121-1	chr9	85341621	85342621	+	731.0	f0_balb.idr	Intergenic	Intergenic	-14971.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	20.0	34.0	23.0	6.0	23.5	10.0
Merged-chr19-4199563-1	chr19	4199063	4200063	+	731.0	f1_c57bl6.idr	intron (NM_011237, intron 5 of 10)	intron (NM_011237, intron 5 of 10)	2040.0	NM_011237	19367.0	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	0.0	0.0	1.0	0.0	2.5	0.5
Merged-chr3-144628201-3	chr3	144627699	144628699	+	731.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR73|LTR|ERV1	57772.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114277388-2	chr7	114276888	114277888	+	731.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1272.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-11196932-2	chr12	11196432	11197432	+	731.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_131084, intron 2 of 4)	intron (NR_131084, intron 2 of 4)	7570.0	NR_131084	77442.0	Mm.159922	NR_131083	ENSMUSG00000112041	9530020I12Rik	-	RIKEN cDNA 9530020I12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-115142246-2	chr13	115141746	115142746	+	731.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40282.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-78473559-1	chr16	78473059	78474059	+	731.0	f0_balb.idr	Intergenic	Lx8|LINE|L1	-86757.0	NR_040569	75818.0	Mm.410817	NR_040569		4930478L05Rik	-	RIKEN cDNA 4930478L05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-86757536-4	chr8	86757025	86758025	+	731.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11519.0	NM_009172	20437.0	Mm.324553	NM_009172	ENSMUSG00000036840	Siah1a	AA982064|AI853500|Sinh1a	siah E3 ubiquitin protein ligase 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142385475-3	chr5	142384982	142385982	+	731.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-16015.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75159800-3	chr11	75159374	75160374	+	731.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001002764, exon 18 of 19)	exon (NM_001002764, exon 18 of 19)	8278.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0.0	7.0	13.0	1.0	7.5	7.5
Merged-chr1-37356743-2	chr1	37356243	37357243	+	731.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	-12474.0	NM_172971	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-17909218-1	chr11	17908718	17909718	+	731.0	f1_c57bl6.idr	Intergenic	MuLV-int|LTR|ERV1	44657.0	NM_026576	68145.0	Mm.178684	NM_026576	ENSMUSG00000016984	Etaa1	5730466H23Rik|AA672646	Ewing tumor-associated antigen 1	protein-coding	8.0	0.0	3.0	4.5	5.0	0.0
Merged-chr6-122350777-2	chr6	122350277	122351277	+	731.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-10550.0	NM_001271579	13619.0	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78049169-2	chr9	78048669	78049669	+	731.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2789.0	NM_008103	14531.0	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32215695-2	chr19	32215195	32216195	+	731.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	-4682.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87507244-2	chr3	87506744	87507744	+	731.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18334.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	0.0	1.5	0.5	2.0	0.0	0.0
Merged-chr10-66951537-2	chr10	66951037	66952037	+	731.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31153.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135370676-2	chr5	135370176	135371176	+	731.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153312, intron 2 of 9)	ID4|SINE|ID	723.0	NM_145414	100609.0	Mm.281189	NM_145414	ENSMUSG00000000916	Nsun5	9830109N13Rik|AI326939|Nol1r|Wbscr20|Wbscr20a	NOL1/NOP2/Sun domain family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128032859-2	chr7	128032359	128033359	+	731.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	28481.0	NM_001079932	434246.0	Mm.389924	NM_001079932	ENSMUSG00000042828	Trim72	BC067209|MG53	tripartite motif-containing 72	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47612259-2	chr17	47611759	47612759	+	731.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016859)	promoter-TSS (NM_016859)	663.0	NM_020048	56771.0	Mm.59393	NM_020048	ENSMUSG00000092558	Med20	1110011O05Rik|2410115I17Rik|AU018348|Trfp	mediator complex subunit 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34233704-2	chr10	34233204	34234204	+	731.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR24|LTR|ERV1	-26153.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-26639084-2	chr11	26638598	26639598	+	731.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-45178.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105914265-1	chr3	105913765	105914765	+	731.0	f0_balb.idr	exon (NM_027025, exon 2 of 7)	exon (NM_027025, exon 2 of 7)	9844.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-40951519-2	chr3	40951019	40952019	+	731.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040399, intron 1 of 9)	intron (NM_001040399, intron 1 of 9)	888.0	NM_001040399	214048.0	Mm.46782	NM_027663	ENSMUSG00000025762	Larp1b	1700108L22Rik|4933421B21Rik|AA690246|Larp2	La ribonucleoprotein domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-20023141-3	chr3	20022664	20023664	+	731.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 5 of 16)	intron (NM_080634, intron 5 of 16)	12146.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116622918-2	chr11	116622417	116623417	+	731.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	1335.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	24.0	96.0	57.0	40.5	103.5	48.5
Merged-chr16-3713686-2	chr16	3713186	3714186	+	731.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001161790, exon 3 of 9)	exon (NM_001161790, exon 3 of 9)	4438.0	NM_001161790	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40090557-2	chr10	40090057	40091057	+	731.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	RMER19B|LTR|ERVK	51697.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3665635-2	chr19	3665135	3666135	+	731.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008513, intron 1 of 22)	intron (NM_008513, intron 1 of 22)	20929.0	NM_008513	16973.0	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75793303-2	chr2	75792803	75793803	+	731.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38874.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106330890-1	chr9	106330390	106331390	+	731.0	f1_c57bl6.idr	intron (NM_027354, intron 10 of 10)	MTC|LTR|ERVL-MaLR	-37742.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	17.5	71.0	23.0	17.5	17.5	5.0
Merged-chr9-106893637-1	chr9	106893137	106894137	+	731.0	f1_c57bl6.idr	3' UTR (NM_153413, exon 53 of 53)	3' UTR (NM_153413, exon 53 of 53)	-1699.0	NM_029103	74840.0	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	1.5	2.0	4.5	13.5	0.5	2.0
Merged-chr10-81636358-2	chr10	81635858	81636858	+	731.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027480, intron 5 of 19)	intron (NM_027480, intron 5 of 19)	7818.0	NM_027480	70615.0	Mm.304382	NM_027480	ENSMUSG00000054708	Ankrd24	4631433D01Rik|5730519E19Rik|D10Bur2e	ankyrin repeat domain 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-9766113-2	chr17	9765613	9766613	+	731.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045433, intron 3 of 3)	intron (NR_045433, intron 3 of 3)	9753.0	NR_045433	71092.0	Mm.243827	NR_045433		4930452A19Rik	4933424P20Rik	RIKEN cDNA 4930452A19 gene	ncRNA	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr1-125457169-2	chr1	125456669	125457669	+	731.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-21442.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-10686525-1	chr13	10686025	10687025	+	731.0	f0_c57.idr	Intergenic	RMER16|LTR|ERVK	-325722.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97360712-2	chr15	97360212	97361212	+	731.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 3 of 5)	intron (NM_172293, intron 3 of 5)	-113425.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80769521-2	chr17	80769021	80770021	+	731.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41496.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95053186-3	chr3	95052687	95053687	+	731.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10573.0	NM_008951	19185.0	Mm.2261	NM_008951	ENSMUSG00000005625	Psmd4	Af1|Mcb1|angiocidin	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	protein-coding	2.0	0.0	0.0	0.0	0.0	0.5
Merged-chr6-134421906-1	chr6	134421406	134422406	+	731.0	f1_c57bl6.idr	intron (NM_001355686, intron 1 of 5)	intron (NM_001355686, intron 1 of 5)	7478.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	8.5	4.0	7.0	0.0	3.0	3.5
Merged-chr5-101925149-2	chr5	101924649	101925649	+	731.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 18 of 66)	intron (NM_172882, intron 18 of 66)	144772.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	12.0	0.0	0.5
Merged-chr4-133497216-1	chr4	133496716	133497716	+	731.0	f1_balb.idr	intron (NM_001081156, intron 1 of 1)	intron (NM_001081156, intron 1 of 1)	1334.0	NM_001081156	69539.0	Mm.151594	NM_001081156	ENSMUSG00000056596	Trnp1	2300002D11Rik|Trnp	TMF1-regulated nuclear protein 1	protein-coding	0.0	2.0	2.5	0.0	7.5	2.0
Merged-chr3-28262733-2	chr3	28262233	28263233	+	731.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163007)	promoter-TSS (NM_001163007)	-481.0	NM_001163007	665113.0	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96837566-3	chr11	96837066	96838066	+	731.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7598.0	NM_008686	18023.0	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	1.5	0.0	2.5	0.0	1.0	4.5
Merged-chr14-54395310-1	chr14	54394810	54395810	+	731.0	f1_balb.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	14162.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	9.5	14.0	2.0	9.5	25.0	18.5
Merged-chr17-73055402-2	chr17	73054938	73055938	+	731.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52547.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0.5	0.5	1.5	0.5	2.0	3.0
Merged-chr1-106434343-2	chr1	106433844	106434844	+	731.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	112287.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	7.5	0.5	2.0	10.0	5.5	5.0
Merged-chr7-110556351-3	chr7	110555859	110556859	+	731.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 2 of 40)	intron (NM_177324, intron 2 of 40)	58561.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32498073-2	chr2	32497573	32498573	+	731.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-37286.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96438833-3	chr9	96438357	96439357	+	731.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39818.0	NM_011279	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9681390-2	chr4	9680890	9681890	+	731.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-12046.0	NM_001290367	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	4.5	0.0	2.5	2.0	3.0	8.5
Merged-chr1-131185677-2	chr1	131185177	131186177	+	731.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018750, intron 2 of 5)	intron (NM_018750, intron 2 of 5)	14508.0	NM_001311094	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	1.0	10.5	3.0	2.5	2.0	6.5
Merged-chr4-149795194-1	chr4	149794694	149795694	+	731.0	f1_c57bl6.idr	Intergenic	Intergenic	-20927.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	10.5	7.0	4.5	2.5	0.0	7.5
Merged-chr12-4546526-2	chr12	4546026	4547026	+	731.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	BC1_Mm|scRNA|scRNA	22413.0	NR_136891	102634330.0	Mm.402324	NR_136891	ENSMUSG00000112422	Gm31938	-	predicted gene, 31938	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80349233-2	chr10	80348733	80349733	+	731.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285435)	promoter-TSS (NM_001285435)	-785.0	NR_104340	66548.0	Mm.71891	NM_025629	ENSMUSG00000043822	Adamtsl5	2010109H09Rik|Thsd6	ADAMTS-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80038714-2	chr7	80038214	80039214	+	731.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	12486.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	4.5	9.0	12.5	4.5	9.0	13.0
Merged-chr10-118080163-3	chr10	118079649	118080649	+	730.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B2|LTR|ERVK	-61638.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	16.5	48.5	45.5	57.5	129.0	62.0
Merged-chr19-8018787-4	chr19	8018284	8019284	+	730.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR50A|LTR|ERVK	-52757.0	NM_001361980	171405.0	Mm.326517	NM_134256	ENSMUSG00000067656	Slc22a27	OAT6-L|OAT6-S|Oat9	solute carrier family 22, member 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-63658253-2	chr1	63657753	63658753	+	730.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081658, intron 10 of 14)	intron (NM_001081658, intron 10 of 14)	28674.0	NM_001081658	241073.0	Mm.297680	NM_001081658	ENSMUSG00000069085	Dytn	Gm215	dystrotelin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9743227-4	chr4	9742702	9743702	+	730.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27383.0	NR_030693	320152.0	Mm.159946	NR_030693		4930412C18Rik	5730591J02Rik	RIKEN cDNA 4930412C18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-116579803-2	chr10	116579303	116580303	+	730.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359563, intron 1 of 13)	intron (NM_001359563, intron 1 of 13)	733.0	NM_001359250	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31462431-4	chr14	31461954	31462954	+	730.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-26354.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11113446-3	chr2	11112941	11113941	+	730.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58941.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152355452-3	chr3	152354949	152355949	+	730.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355666, intron 1 of 21)	intron (NM_001355666, intron 1 of 21)	8971.0	NM_001076676	170822.0	Mm.258320	NM_133247	ENSMUSG00000025437	Usp33	9830169D19Rik|AA409780|Vdu1	ubiquitin specific peptidase 33	protein-coding	7.0	9.5	4.5	5.0	22.0	9.5
Merged-chr11-108032774-3	chr11	108032286	108033286	+	730.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 5 of 16)	intron (NM_011101, intron 5 of 16)	35938.0	NR_106082	102465705.0		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116186616-4	chr3	116186119	116187119	+	730.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56931.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31070439-2	chr6	31069939	31070939	+	730.849976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7346.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-6492980-2	chr1	6492480	6493480	+	730.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001244693, intron 2 of 22)	intron (NM_001244693, intron 2 of 22)	5749.0	NM_001244692	240690.0	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	2.0	2.5	0.0	0.0	0.0	0.0
Merged-chr7-98806131-2	chr7	98805631	98806631	+	730.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-28981.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.5	6.0	0.0	0.0	1.0	2.0
Merged-chr19-12800754-2	chr19	12800225	12801225	+	730.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_134152, intron 1 of 8)	B1_Mur1|SINE|Alu	2146.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	74.0	188.0	137.0	77.0	201.0	146.0
Merged-chr9-64814367-2	chr9	64813867	64814867	+	730.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162917, intron 2 of 34)	intron (NM_001162917, intron 2 of 34)	3356.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126705609-3	chr8	126705098	126706098	+	730.833313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112162.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	7.0	11.0	11.0	8.0	0.0	3.5
Merged-chr9-110624503-3	chr9	110623982	110624982	+	730.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026012)	promoter-TSS (NM_026012)	-89.0	NM_026012	67169.0	Mm.46680	NM_026012	ENSMUSG00000032491	Nradd	2610311B09Rik|BB104149|NRDD|NRH2|PLAIDD	neurotrophin receptor associated death domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10041695-3	chr19	10041198	10042198	+	730.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021890, exon 1 of 12)	5' UTR (NM_021890, exon 1 of 12)	150.0	NM_021890	60527.0	Mm.253875	NM_021890	ENSMUSG00000024664	Fads3	AI464531	fatty acid desaturase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58031377-3	chr1	58030897	58031897	+	730.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009676, intron 1 of 34)	intron (NM_009676, intron 1 of 34)	1428.0	NM_009676	11761.0	Mm.26787	NM_009676	ENSMUSG00000063558	Aox1	AI196512|AI255253|Ao|Aox-1|Aox-2|Aox2|Moro|Ro	aldehyde oxidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110211500-4	chr5	110211005	110212005	+	730.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347389, intron 17 of 23)	MTB_Mm|LTR|ERVL-MaLR	-19499.0	NM_001253814	71782.0	Mm.288442	NM_027922	ENSMUSG00000029501	Ankle2	1110001J12Rik|AI661024|D5Ertd585e	ankyrin repeat and LEM domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131702612-3	chr1	131702067	131703067	+	730.799988	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311096, intron 4 of 4)	intron (NM_001311096, intron 4 of 4)	13872.0	NM_145509	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	16.5	18.0	22.0	1.0	7.0	12.0
Merged-chr9-120591664-4	chr9	120591168	120592168	+	730.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	14337.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-37046392-3	chr6	37045896	37046896	+	730.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 12 of 32)	intron (NM_001347104, intron 12 of 32)	-236217.0	NM_008973	19242.0	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120367814-2	chr8	120367314	120368314	+	730.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121052.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148393945-2	chr2	148393445	148394445	+	730.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1432.0	NM_009219	20608.0	Mm.35324	NM_009219	ENSMUSG00000037014	Sstr4	Smstr4|sst4	somatostatin receptor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86219427-2	chr15	86218927	86219927	+	730.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 1 of 12)	L2a|LINE|L2	4968.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117569618-2	chr8	117569118	117570118	+	730.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 7 of 32)	intron (NM_172285, intron 7 of 32)	71343.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36729163-2	chr16	36728663	36729663	+	730.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	35185.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69235833-4	chr11	69235339	69236339	+	730.733337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008192, intron 2 of 18)	CpG	1183.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155097426-4	chr1	155096927	155097927	+	730.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010500, exon 1 of 1)	3' UTR (NM_010500, exon 1 of 1)	2209.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31454946-3	chr15	31454445	31455445	+	730.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172606)	TTS (NM_172606)	-1256.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-14885299-3	chr9	14884788	14885788	+	730.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_176807)	TTS (NM_176807)	18663.0	NM_176807	64931.0	Mm.86738	NM_022888	ENSMUSG00000031933	Izumo1r	0910001L11Rik|C86255|Folbp3|Folr4|Juno	IZUMO1 receptor, JUNO	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8022195-3	chr10	8021670	8022670	+	730.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-66047.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79545233-3	chr12	79544737	79545737	+	730.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	247886.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-94835370-3	chr17	94834871	94835871	+	730.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045963)	promoter-TSS (NR_045963)	-572.0	NR_045963	100038746.0	Mm.456686	NR_045963	ENSMUSG00000066057	Gm1976	100038868	predicted gene 1976	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130845776-3	chr5	130845232	130846232	+	730.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	396940.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-83949141-3	chr12	83948638	83949638	+	730.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12B|LTR|ERVK	-1470.0	NM_023633	71952.0	Mm.251483	NM_023633	ENSMUSG00000046791	Riox1	2410016O06Rik|MAPJD|NO66	ribosomal oxygenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165945953-2	chr2	165945453	165946453	+	730.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-46684.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr5-93105245-2	chr5	93104745	93105745	+	730.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001009818, intron 1 of 9)	intron (NM_001009818, intron 1 of 9)	11829.0	NM_001347377	52398.0	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	0.5	2.5	1.5	0.0	0.0	0.0
Merged-chr3-108069795-2	chr3	108069295	108070295	+	730.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORSL-2b|DNA|hAT-Tip100	15607.0	NM_001346665	109674.0	Mm.274335	NM_028779	ENSMUSG00000027889	Ampd2	1200014F01Rik|AI552571|Ampd-2|m4521Dajl	adenosine monophosphate deaminase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-101607972-4	chr14	101607445	101608445	+	730.650024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	CpG	1246.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87249230-4	chr17	87248820	87249820	+	730.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16627.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	6.0	5.0	3.5	6.0	11.5	5.0
Merged-chr17-31227122-2	chr17	31226622	31227622	+	730.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177823, intron 6 of 13)	intron (NM_177823, intron 6 of 13)	19056.0	NM_177823	328795.0	Mm.387930	NM_177823	ENSMUSG00000042345	Ubash3a	5830413C03Rik|C330001M22|Sts-2|TULA|TULA-1	ubiquitin associated and SH3 domain containing, A	protein-coding	0.0	6.5	8.5	0.0	4.5	2.5
Merged-chr3-94838914-3	chr3	94838407	94839407	+	730.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165948, intron 1 of 18)	intron (NM_001165948, intron 1 of 18)	1340.0	NM_172683	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	16.5	33.5	9.5	19.0	23.0	17.0
Merged-chr2-45758236-3	chr2	45757726	45758726	+	730.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61621.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96279279-3	chr10	96278766	96279766	+	730.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53059.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-43106444-3	chr16	43105942	43106942	+	730.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285805, intron 2 of 10)	MLT2B4|LTR|ERVL	-140842.0	NM_181058	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-159190584-2	chr3	159190084	159191084	+	730.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040750, intron 2 of 4)	L1Md_F2|LINE|L1	114220.0	NR_040750	624759.0	Mm.491054	NR_040750	ENSMUSG00000106053	Gm20752	-	predicted gene, 20752	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9500121-2	chr3	9499621	9500621	+	730.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133218, intron 2 of 8)	MIR3|SINE|MIR	97043.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76763051-2	chr14	76762554	76763554	+	730.5	f0_balb.idr|f1_balb.idr	TTS (NR_153763)	TTS (NR_153763)	2923.0	NR_153763	73883.0	Mm.489041	NR_153763		4930431P22Rik	-	RIKEN cDNA 4930431P22 gene	ncRNA	6.0	0.0	6.0	11.5	3.0	11.0
Merged-chr11-62605692-2	chr11	62605192	62606192	+	730.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_030738)	TTS (NR_030738)	1162.0	NR_028541	100217444.0		NR_028541		Snord65	MBII-135|snoRNA135	small nucleolar RNA, C/D box 65	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-50057600-2	chr12	50057100	50058100	+	730.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-576738.0	NR_045472	69054.0	Mm.417838	NR_045472	ENSMUSG00000100844	1810007C17Rik	-	RIKEN cDNA 1810007C17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-105893360-2	chr14	105892860	105893860	+	730.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011897, exon 2 of 2)	exon (NM_011897, exon 2 of 2)	3459.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55398438-3	chr4	55397975	55398975	+	730.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20367.0	NR_040674	100415914.0	Mm.261765	NR_040674	ENSMUSG00000087070	Gm12505	-	predicted gene 12505	ncRNA	3.5	3.0	3.0	1.5	1.0	2.0
Merged-chr4-154065620-2	chr4	154065120	154066120	+	730.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001126331, intron 4 of 9)	intron (NM_001126331, intron 4 of 9)	-22943.0	NM_001033455	381580.0	Mm.51001	NM_001033455	ENSMUSG00000039492	Ccdc27	Gm1035	coiled-coil domain containing 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41320421-2	chr19	41319921	41320921	+	730.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 8 of 16)	intron (NM_031376, intron 8 of 16)	-56417.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120567911-2	chr8	120567411	120568411	+	730.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_198671, exon 6 of 16)	exon (NM_198671, exon 6 of 16)	21164.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-115818375-2	chr3	115817875	115818875	+	730.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69684.0	NR_027894	68161.0	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76177210-1	chr12	76176710	76177710	+	730.5	f0_balb.idr	promoter-TSS (NR_104386)	promoter-TSS (NR_104386)	49.0	NM_010157	13983.0	Mm.2561	NM_010157	ENSMUSG00000021055	Esr2	ER[b]|ERbeta|Estrb	estrogen receptor 2 (beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88764062-2	chr5	88763562	88764562	+	730.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007832)	promoter-TSS (NM_007832)	-951.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-133541505-2	chr3	133541005	133542005	+	730.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040400, intron 1 of 10)	B1_Mm|SINE|Alu	2885.0	NM_001040400	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-106955867-2	chr2	106955367	106956367	+	730.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14524.0	NM_173750	212772.0	Mm.381231	NM_173750	ENSMUSG00000027122	Arl14ep	2700007P21Rik|4930448O08Rik|ARF7EP	ADP-ribosylation factor-like 14 effector protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-36981238-2	chr10	36980738	36981738	+	730.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008229, intron 1 of 13)	Lx9|LINE|L1	6694.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109536945-2	chr8	109536445	109537445	+	730.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019938, intron 16 of 20)	intron (NM_019938, intron 16 of 20)	28916.0	NR_151644	64340.0	Mm.23705	NM_178380	ENSMUSG00000037993	Dhx38	5730550P09Rik|AI325984|AW540902|Ddx38|KIAA0224|Prp16	DEAH (Asp-Glu-Ala-His) box polypeptide 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68719163-2	chr10	68718663	68719663	+	730.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-4583.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29505489-2	chr11	29504989	29505989	+	730.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176841, intron 30 of 31)	intron (NM_176841, intron 30 of 31)	9544.0	NM_026465	67939.0	Mm.251087	NM_026465	ENSMUSG00000032673	Prorsd1	2010316F05Rik|Ncrna00117|Prdxdd1	prolyl-tRNA synthetase domain containing 1	protein-coding	4.0	0.0	1.0	0.0	2.5	0.5
Merged-chr17-67344474-2	chr17	67343974	67344974	+	730.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	9985.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28716323-3	chr17	28715816	28716816	+	730.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168513, intron 3 of 11)	MTE2a|LTR|ERVL-MaLR	23748.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71521240-2	chr8	71520740	71521740	+	730.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9471.0	NM_032398	84094.0	Mm.260768	NM_032398	ENSMUSG00000034845	Plvap	MECA32|Pv1	plasmalemma vesicle associated protein	protein-coding	3.0	7.5	1.0	0.0	1.0	0.5
Merged-chr2-181091017-2	chr2	181090517	181091517	+	730.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003824, intron 10 of 16)	intron (NM_001003824, intron 10 of 16)	44272.0	NM_001006668	16536.0	Mm.40615	NM_010611	ENSMUSG00000016346	Kcnq2	HNSPC|KQT2|Nmf134	potassium voltage-gated channel, subfamily Q, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101947342-2	chr5	101946864	101947864	+	730.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 10 of 66)	intron (NM_172882, intron 10 of 66)	122557.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	20.5	10.5	3.0	9.0	10.5	8.5
Merged-chr8-68181380-2	chr8	68180880	68181880	+	730.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95148.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	1.0	7.5	5.0	0.0	5.5	5.5
Merged-chr14-59555674-2	chr14	59555174	59556174	+	730.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42285.0	NM_001168537	71891.0	Mm.439850	NM_027986	ENSMUSG00000021982	Cdadc1	2310010M10Rik|AI449174|AI463398|BB130816|NYD-SP15	cytidine and dCMP deaminase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98168597-2	chr15	98168097	98169097	+	730.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_177716, exon 1 of 1)	exon (NM_177716, exon 1 of 1)	791.0	NM_177716	239650.0	Mm.54140	NM_177716	ENSMUSG00000029875	Ccdc184	5630400A08|AI836003	coiled-coil domain containing 184	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-137313155-2	chr7	137312655	137313655	+	730.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010096, exon 3 of 16)	exon (NM_010096, exon 3 of 16)	1290.0	NM_001113415	13593.0	Mm.258708	NM_010096	ENSMUSG00000010476	Ebf3	3110018A08Rik|O/E-2|mKIAA4201	early B cell factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-21951137-2	chr3	21950637	21951637	+	730.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-125515.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115676085-2	chr8	115675585	115676585	+	730.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30809.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-21418901-2	chr12	21418415	21419415	+	730.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1479.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	5.0	10.5	1.5	0.0	0.0	5.5
Merged-chr10-30675714-2	chr10	30675214	30676214	+	730.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 9 of 14)	RMER10A|LTR|ERVL	-19847.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117945606-2	chr11	117945106	117946106	+	730.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	23760.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72201018-3	chr6	72200515	72201515	+	730.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34562.0	NM_153778	71093.0	Mm.87449	NM_153778	ENSMUSG00000037621	Atoh8	4933425C05Rik|Hath6|Math6|bHLHa21|okadin	atonal bHLH transcription factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-189675572-3	chr1	189675087	189676087	+	730.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081363, intron 7 of 17)	intron (NM_001081363, intron 7 of 17)	12499.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29954997-3	chr7	29954485	29955485	+	730.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178384)	promoter-TSS (NM_178384)	-920.0	NM_178384	72723.0	Mm.371648	NM_178384	ENSMUSG00000059975	Zfp74	2810054M15Rik|KRAB8|Zfp66|Znf569|mszf21|mszf77|zfp-74	zinc finger protein 74	protein-coding	24.5	48.0	21.0	34.5	97.5	43.0
Merged-chr11-80038303-3	chr11	80037817	80038817	+	730.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42674.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-58517423-3	chr3	58516923	58517923	+	730.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8398.0	NM_001005509	229317.0	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	3.5	16.0	3.0	0.5	0.0	1.5
Merged-chr8-123103258-2	chr8	123102852	123103852	+	730.375	f1_balb.idr|f1_c57bl6.idr	TTS (NR_028128)	TTS (NR_028128)	294.0	NR_028128	100302565.0		NR_028128		Snord68	MBII-202	small nucleolar RNA, C/D box 68	snoRNA	17.0	35.5	35.0	14.5	41.0	41.0
Merged-chr16-25064704-2	chr16	25064204	25065204	+	730.375	f1_balb.idr|f1_c57bl6.idr	intron (NR_040374, intron 1 of 2)	intron (NR_040374, intron 1 of 2)	5065.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-65672857-2	chr6	65672357	65673357	+	730.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172399, intron 1 of 3)	CpG	1246.0	NM_172399	68169.0	Mm.52392	NM_172399	ENSMUSG00000049001	Ndnf	A930038C07Rik|epidermacan	neuron-derived neurotrophic factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90028685-2	chr7	90028185	90029185	+	730.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110364)	promoter-TSS (NR_110364)	-474.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71004977-2	chr17	71004477	71005477	+	730.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2444.0	NM_026064	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	8.5	13.0	5.0	10.0	6.0	2.0
Merged-chr4-101156377-2	chr4	101155877	101156877	+	730.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 22 of 24)	intron (NM_146145, intron 22 of 24)	87339.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165791884-2	chr2	165791390	165792390	+	730.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027230, intron 22 of 23)	intron (NM_027230, intron 22 of 23)	66283.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.0	2.0	0.0	0.0	0.0	5.0
Merged-chr16-12574480-3	chr16	12573975	12574975	+	730.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA9|LINE|L1	-236915.0	NR_040507	75493.0	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	0.0	1.5	0.0	0.0	1.5	0.0
Merged-chr13-107755319-2	chr13	107754819	107755819	+	730.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 5 of 14)	ORR1A3|LTR|ERVL-MaLR	67922.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43648297-2	chr7	43647797	43648797	+	730.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_028236, intron 5 of 5)	RLTR20B2|LTR|ERVK	11864.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-127020600-2	chr4	127020100	127021100	+	730.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045010)	promoter-TSS (NR_045010)	-701.0	NR_045010	71514.0	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21915646-3	chr16	21915146	21916146	+	730.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172821, intron 9 of 12)	Lx8|LINE|L1	23677.0	NM_172821	71751.0	Mm.420837	NM_172821	ENSMUSG00000033618	Map3k13	C130026N12Rik|LZK	mitogen-activated protein kinase kinase kinase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24316985-4	chr2	24316472	24317472	+	730.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-19888.0	NM_031167	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12158759-3	chr18	12158239	12159239	+	730.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-9991.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	3.0	0.0	0.0	3.0	12.0	0.0
Merged-chr6-124717558-4	chr6	124717062	124718062	+	730.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_029554)	TTS (NR_029554)	423.0	NR_029554	387159.0		NR_029554	ENSMUSG00000065474	Mir141	Mirn141|mir-141|mmu-mir-141	microRNA 141	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9957989-2	chr19	9957489	9958489	+	730.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	BC1_Mm|scRNA|scRNA	-22611.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.0	1.0	0.0	0.0	0.0	2.5
Merged-chr17-17881491-4	chr17	17881018	17882018	+	730.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013521, intron 1 of 1)	intron (NM_013521, intron 1 of 1)	2421.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	7.5	15.0	12.0	5.0	20.0	9.5
Merged-chr16-90868322-3	chr16	90867836	90868836	+	730.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199210, intron 2 of 7)	intron (NM_001199210, intron 2 of 7)	37477.0	NM_001316761	70967.0	Mm.253077	NM_027627	ENSMUSG00000039903	Eva1c	1700092M14Rik|4931408A02Rik|Fam176c	eva-1 homolog C (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-79504915-2	chr7	79504415	79505415	+	730.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029818)	promoter-TSS (NR_029818)	-349.0	NR_029818	723968.0		NR_029818	ENSMUSG00000093238	Mir9-3	Mirn9-3|mir-9-3|mmu-mir-9-3	microRNA 9-3	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23773284-4	chr18	23772766	23773766	+	730.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 2 of 7)	intron (NM_001162941, intron 2 of 7)	1723.0	NR_105778	102465185.0		NR_105778	ENSMUSG00000098607	Mir6360	Gm27296|mmu-mir-6360	microRNA 6360	ncRNA	10.0	1.0	1.0	3.0	3.5	3.5
Merged-chr1-171478101-2	chr1	171477581	171478581	+	730.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25397.0	NM_019484	56009.0	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	1.5	2.0	1.0	2.0	6.5	1.5
Merged-chr14-57103949-2	chr14	57103449	57104449	+	730.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008125, intron 1 of 1)	CpG	753.0	NM_008125	14619.0	Mm.390683	NM_008125	ENSMUSG00000046352	Gjb2	AI325222|Cnx26|Cx26|Gjb-2	gap junction protein, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122652143-2	chr6	122651643	122652643	+	730.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	25719.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	14.0	30.5	19.0	17.5	28.5	9.5
Merged-chr9-103225763-3	chr9	103225313	103226313	+	730.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133977, intron 4 of 16)	intron (NM_133977, intron 4 of 16)	4473.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65124020-3	chr9	65123520	65124520	+	730.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020043, exon 7 of 20)	exon (NM_020043, exon 7 of 20)	-17134.0	NM_008988	19289.0	Mm.41529	NM_008988	ENSMUSG00000032394	Igdcc3	2810401C09Rik|AI851425|Punc|WI-14920	immunoglobulin superfamily, DCC subclass, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91347870-3	chr2	91347374	91348374	+	730.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175123, intron 3 of 8)	intron (NM_175123, intron 3 of 8)	82759.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	5.5	3.5	4.5	0.0	9.0	2.5
Merged-chr7-34139930-2	chr7	34139430	34140430	+	730.166687	f1_balb.idr|f1_c57bl6.idr	TTS (NM_016682)	TTS (NM_016682)	-6662.0	NM_207212	101543.0	Mm.422738	NM_207212	ENSMUSG00000036459	Wtip	-	WT1-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68509332-3	chr11	68508815	68509815	+	730.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004435, intron 1 of 19)	PB1D10|SINE|Alu	6296.0	NR_126154	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37406574-3	chr9	37406084	37407084	+	730.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001309390, intron 10 of 17)	intron (NM_001309390, intron 10 of 17)	4687.0	NM_001309390	74144.0	Mm.485070	NM_028783	ENSMUSG00000032125	Robo4	1200012D01Rik|AI593217	roundabout guidance receptor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34112477-3	chr10	34111971	34112971	+	730.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	15501.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125858006-2	chr8	125857506	125858506	+	730.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175561, intron 12 of 33)	intron (NM_175561, intron 12 of 33)	-39908.0	NR_155422	102632990.0	Mm.429446	NR_155422		A730098A19Rik	-	RIKEN cDNA A730098A19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79884690-2	chr10	79884190	79885190	+	730.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-1622.0	NM_015779	50701.0	Mm.262194	NM_015779	ENSMUSG00000020125	Elane	Ela2|F430011M15Rik|NE	elastase, neutrophil expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-30930375-3	chr1	30929882	30930882	+	730.138916	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	19328.0	NR_002688	433406.0	Mm.389003	NR_002688		Gm13363	-	predicted gene 13363	pseudo	1.5	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111148677-2	chr8	111148177	111149177	+	730.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3179.0	NR_040364	434350.0	Mm.442061	NR_040363		9430091E24Rik	-	RIKEN cDNA 9430091E24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130821130-3	chr4	130820637	130821637	+	730.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 3 of 4)	intron (NM_011520, intron 3 of 4)	28600.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128132253-3	chr7	128131752	128132752	+	730.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021334, intron 5 of 29)	intron (NM_021334, intron 5 of 29)	2684.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83731315-2	chr6	83730815	83731815	+	730.083313	f1_balb.idr|f1_c57bl6.idr	intron (NM_011912, intron 1 of 2)	intron (NM_011912, intron 1 of 2)	-11702.0	NM_134157	110935.0	Mm.220823	NM_134157	ENSMUSG00000006269	Atp6v1b1	AW208839|Atp6b1|D630003L15|D630030L16Rik|D630039P21Rik|Vpp-3|Vpp3	ATPase, H+ transporting, lysosomal V1 subunit B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-13563783-5	chr12	13563255	13564255	+	730.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027706, intron 50 of 51)	intron (NM_027706, intron 50 of 51)	63891.0	NR_136761	102639399.0	Mm.122052	NR_136761	ENSMUSG00000113666	Gm35725	-	predicted gene, 35725	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-104001296-4	chr2	104000837	104001837	+	730.012512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175161, intron 3 of 4)	intron (NM_175161, intron 3 of 4)	-26462.0	NM_020593	57443.0	Mm.143768	NM_020593	ENSMUSG00000027180	Fbxo3	1200002G09Rik|1700026K02Rik|AI046358|Fba	F-box protein 3	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr18-84763243-2	chr18	84762743	84763743	+	730.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	19176.0	NR_155706	102641800.0		NR_155706		Gm38576	-	predicted gene, 38576	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36017135-2	chr18	36016635	36017635	+	730.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001167891)	TTS (NM_001167891)	52305.0	NR_110349	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0.0	2.0	0.0	0.0	0.0	0.5
Merged-chr18-53234520-1	chr18	53234020	53235020	+	730.0	f1_c57bl6.idr	Intergenic	Intergenic	-11142.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr3-11226040-2	chr3	11225540	11226540	+	730.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	618319.0	NR_040751	100038545.0	Mm.388494	NR_040751	ENSMUSG00000104015	Gm10745	-	predicted gene 10745	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-58661135-2	chr5	58660635	58661635	+	730.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-208137.0	NR_046190	78163.0	Mm.243828	NR_046190	ENSMUSG00000105234	4930459L07Rik	-	RIKEN cDNA 4930459L07 gene	ncRNA	0.0	2.0	1.0	0.0	0.0	0.0
Merged-chr7-136294639-3	chr7	136294149	136295149	+	730.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102277, intron 3 of 3)	intron (NR_102277, intron 3 of 3)	26325.0	NR_102277	77383.0	Mm.227745	NR_102277	ENSMUSG00000110027	C030029H02Rik	-	RIKEN cDNA C030029H02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132950455-1	chr4	132949955	132950955	+	730.0	f1_balb.idr	Intergenic	Intergenic	-23640.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	23.5	22.5	32.5	2.5	23.0	11.0
Merged-chr14-14011999-2	chr14	14011499	14012499	+	730.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139227)	promoter-TSS (NM_139227)	-492.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78604128-1	chr17	78603628	78604628	+	730.0	f0_balb.idr	intron (NM_001197028, intron 8 of 12)	intron (NM_001197028, intron 8 of 12)	96065.0	NM_028813	74199.0	Mm.292983	NM_028813	ENSMUSG00000024076	Vit	1700052E02Rik|1700110E08Rik|2810429K11Rik|AKH|akhirin	vitrin	protein-coding	4.0	0.5	3.5	0.0	5.5	0.5
Merged-chr5-123388651-2	chr5	123388151	123389151	+	730.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-6147.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71966426-1	chr17	71965926	71966926	+	730.0	f0_balb.idr	intron (NM_007439, intron 9 of 28)	intron (NM_007439, intron 9 of 28)	184479.0	NM_030179	78785.0	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	1.0	1.0	0.5	4.5	0.0	0.0
Merged-chr7-114460040-1	chr7	114459540	114460540	+	730.0	f0_balb.idr	intron (NM_011055, intron 1 of 15)	Lx5b|LINE|L1	44786.0	NM_011055	18576.0	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	0.0	11.0	4.5	4.5	0.0	4.5
Merged-chr19-6874844-2	chr19	6874344	6875344	+	730.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16633.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-28592288-2	chr2	28591788	28592788	+	730.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-9009.0	NM_001290484	70239.0	Mm.274120	NM_148928	ENSMUSG00000026816	Gtf3c5	2700084A09Rik|TFIIIC63|TFiiiC2-63	general transcription factor IIIC, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69064969-2	chr11	69064469	69065469	+	730.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	5194.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-73114937-2	chr5	73114437	73115437	+	730.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028194, intron 13 of 62)	intron (NM_028194, intron 13 of 62)	108033.0	NM_173403	231290.0	Mm.491387	NM_173403	ENSMUSG00000029219	Slc10a4	E130304D01	solute carrier family 10 (sodium/bile acid cotransporter family), member 4	protein-coding	0.0	1.0	1.0	0.0	0.0	0.0
Merged-chr12-44548147-1	chr12	44547647	44548647	+	730.0	f0_balb.idr	intron (NM_001146031, intron 10 of 27)	intron (NM_001146031, intron 10 of 27)	219262.0	NM_001146031	319504.0	Mm.208439	NM_176930	ENSMUSG00000020598	Nrcam	Bravo|C030017F07Rik|C130076O07Rik|mKIAA0343	neuronal cell adhesion molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-69041380-2	chr16	69040880	69041880	+	730.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	759001.0	NR_130991	78110.0	Mm.211406	NR_130991	ENSMUSG00000107073	4930428D20Rik	Gm43265	RIKEN cDNA 4930428D20 gene	ncRNA	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43909575-1	chr5	43909075	43910075	+	730.0	f1_balb.idr	intron (NM_007646, intron 7 of 7)	intron (NM_007646, intron 7 of 7)	40766.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	1.5	17.5	7.5	2.5	12.0	7.5
Merged-chr11-120008192-2	chr11	120007692	120008692	+	730.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001198785, exon 14 of 14)	3' UTR (NM_001198785, exon 14 of 14)	-6575.0	NR_037225	100526518.0		NR_037225	ENSMUSG00000105524	Mir3065	mir-3065|mmu-mir-3065	microRNA 3065	ncRNA	2.0	0.0	0.0	0.0	0.0	0.5
Merged-chr7-114887973-1	chr7	114887473	114888473	+	730.0	f1_balb.idr	Intergenic	RLTR45|LTR|ERVK	-60677.0	NR_040317	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	0.0	1.0	6.5	0.0	2.0	2.5
Merged-chr12-80237224-2	chr12	80236724	80237724	+	730.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 1 of 20)	intron (NM_134156, intron 1 of 20)	23147.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84895598-1	chr8	84895098	84896098	+	730.0	f1_c57bl6.idr	Intergenic	Intergenic	-1677.0	NM_008097	270076.0	Mm.2475	NM_008097	ENSMUSG00000003809	Gcdh	9030411L18|AI266902|D17825|GCD	glutaryl-Coenzyme A dehydrogenase	protein-coding	7.5	13.0	15.0	11.5	41.0	23.0
Merged-chr5-96918693-1	chr5	96918193	96919193	+	730.0	f1_balb.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	-2579.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	150.0	394.0	172.0	151.5	283.0	161.0
Merged-chr11-99024942-2	chr11	99024442	99025442	+	730.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011623)	promoter-TSS (NM_011623)	-753.0	NM_011623	21973.0	Mm.4237	NM_011623	ENSMUSG00000020914	Top2a	Top-2	topoisomerase (DNA) II alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-43765498-2	chr10	43764998	43765998	+	730.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040581, intron 3 of 3)	intron (NR_040581, intron 3 of 3)	19340.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81538283-1	chr7	81537783	81538783	+	730.0	f1_balb.idr	intron (NM_172904, intron 11 of 12)	intron (NM_172904, intron 11 of 12)	8367.0	NR_035501	100316717.0		NR_035501	ENSMUSG00000104618	Mir1839	mir-1839|mmu-mir-1839	microRNA 1839	ncRNA	0.0	16.5	3.5	0.0	0.0	4.5
Merged-chr16-23195818-3	chr16	23195317	23196317	+	730.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155420, intron 2 of 2)	MTE-int|LTR|ERVL-MaLR	20537.0	NR_155420	105246089.0	Mm.390905	NR_155420		C730014E05Rik	-	RIKEN cDNA C730014E05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155012941-2	chr4	155012455	155013455	+	730.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356470, intron 1 of 22)	intron (NM_001356470, intron 1 of 22)	-1971.0	NM_001113360	269615.0	Mm.379458	NM_175556	ENSMUSG00000029055	Plch2	A930027K05Rik|PLCeta2|Plc-eta2|Plcl4	phospholipase C, eta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45060963-2	chr2	45060463	45061463	+	730.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-37786.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32738125-1	chr5	32737625	32738625	+	730.0	f1_balb.idr	exon (NM_177298, exon 7 of 8)	exon (NM_177298, exon 7 of 8)	8217.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96531554-2	chr9	96531054	96532054	+	730.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52879.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60957466-2	chr18	60956966	60957966	+	730.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105948)	promoter-TSS (NR_105948)	-607.0	NR_105948	102465593.0		NR_105948	ENSMUSG00000098475	Mir6982	Gm27890|mmu-mir-6982	microRNA 6982	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122608428-2	chr6	122607928	122608928	+	730.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008108, intron 1 of 1)	intron (NM_008108, intron 1 of 1)	1659.0	NM_008108	14562.0	Mm.299742	NM_008108	ENSMUSG00000030117	Gdf3	C78318|Gdf-3|Vgr-2|Vgr2|ecat9	growth differentiation factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73938597-2	chr13	73938097	73939097	+	730.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027182)	promoter-TSS (NM_027182)	786.0	NM_001308041	105246.0	Mm.278509	NM_001024508	ENSMUSG00000057649	Brd9	AL022779	bromodomain containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5513963-2	chr11	5513463	5514463	+	730.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6678.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-61771437-1	chr1	61770937	61771937	+	730.0	f1_c57bl6.idr	intron (NM_001081050, intron 2 of 22)	intron (NM_001081050, intron 2 of 22)	132613.0	NM_001081050	72823.0	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	7.5	4.5	1.5	6.5	3.5	3.0
Merged-chr3-31110338-1	chr3	31109838	31110838	+	730.0	f0_balb.idr	intron (NM_001039090, intron 2 of 6)	intron (NM_001039090, intron 2 of 6)	15280.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14290746-2	chr2	14290246	14291246	+	730.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 12 of 29)	intron (NM_008625, intron 12 of 29)	29743.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60772735-2	chr18	60772225	60773225	+	730.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1871.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	0.0	0.0	2.0	0.0	7.0	1.0
Merged-chr9-41028655-4	chr9	41028156	41029156	+	730.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 8 of 13)	intron (NM_176860, intron 8 of 13)	-24028.0	NM_001281954	54698.0	Mm.42791	NM_019465	ENSMUSG00000032021	Crtam	-	cytotoxic and regulatory T cell molecule	protein-coding	7.5	7.0	0.5	0.0	7.0	1.0
Merged-chr10-33905134-2	chr10	33904634	33905634	+	730.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162957)	promoter-TSS (NM_001162957)	23.0	NM_001162957	212892.0	Mm.131949	NM_001162957	ENSMUSG00000039552	Rsph4a	A230081C05|Rshl3	radial spoke head 4 homolog A (Chlamydomonas)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11464519-2	chr16	11464019	11465019	+	730.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	58871.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-13336553-3	chr1	13336057	13337057	+	730.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	35872.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-89831453-2	chr16	89830953	89831953	+	730.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 15 of 27)	B1_Mus2|SINE|Alu	-13101.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75748126-2	chr7	75747626	75748626	+	730.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 35 of 36)	intron (NM_029332, intron 35 of 36)	-100212.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137960138-1	chr4	137959638	137960638	+	730.0	f1_c57bl6.idr	intron (NM_199307, intron 18 of 19)	B2_Mm2|SINE|B2	-33318.0	NM_001256198	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	5.5	0.0	0.5	6.0	6.5	9.5
Merged-chr1-132335-1	chr1	131835	132835	+	730.0	f1_c57bl6.idr	Intergenic	Intergenic	3539163.0	NM_001011874	497097.0	Mm.454496	NM_001011874	ENSMUSG00000051951	Xkr4	AY534250|Gm210|XRG4|mKIAA1889	X-linked Kx blood group related 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80558023-2	chr10	80557523	80558523	+	730.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025852, intron 1 of 14)	intron (NM_025852, intron 1 of 14)	3537.0	NM_025852	66932.0	Mm.1116	NM_025852	ENSMUSG00000047417	Rexo1	1700021P10Rik|2610511M11Rik|AW050347|EloA-BP1|Rex1|Tceb3bp1	REX1, RNA exonuclease 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-115740311-2	chr3	115739811	115740811	+	730.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-25256.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	9.0	0.0	0.0	3.0	1.0	1.5
Merged-chr2-117272196-3	chr2	117271694	117272694	+	730.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026620)	TTS (NM_026620)	22455.0	NM_026620	68215.0	Mm.219389	NM_026620	ENSMUSG00000027349	Fam98b	2610510H03Rik	family with sequence similarity 98, member B	protein-coding	1.0	3.0	3.5	6.5	2.0	2.5
Merged-chr3-157565127-2	chr3	157564627	157565627	+	730.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	-1692.0	NM_001359745	19218.0	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	1.0	0.5	8.5	1.0	0.5	8.5
Merged-chr8-27017726-2	chr8	27017226	27018226	+	730.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-6073.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49164495-2	chr13	49163995	49164995	+	730.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16167.0	NM_001290311	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-35756541-2	chr5	35756041	35757041	+	730.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1339.0	NM_001177697	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-28485831-1	chr10	28485331	28486331	+	730.0	f0_balb.idr	intron (NM_001359356, intron 11 of 30)	intron (NM_001359356, intron 11 of 30)	-182529.0	NM_001305663	210757.0	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-3358975-2	chr18	3358475	3359475	+	730.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033457, intron 1 of 1)	intron (NR_033457, intron 1 of 1)	-21386.0	NM_001110852	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3106279-2	chr11	3105779	3106779	+	730.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR3-int|LTR|ERVK	-17742.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143288371-2	chr7	143287871	143288871	+	730.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_001461, exon 1 of 1)	non-coding (NR_001461, exon 1 of 1)	8176.0	NR_001461	63830.0	Mm.356096	NR_001461	ENSMUSG00000101609	Kcnq1ot1	Kvlqt1-as|Lit1|Tssc8	KCNQ1 overlapping transcript 1	ncRNA	0.0	1.5	2.5	0.0	1.5	2.5
Merged-chr5-102057657-2	chr5	102057157	102058157	+	730.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	12264.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-114368286-1	chr9	114367786	114368786	+	730.0	f0_balb.idr	promoter-TSS (NR_040383)	promoter-TSS (NR_040383)	-38.0	NR_040383	75116.0	Mm.72675	NR_040383	ENSMUSG00000074039	4930520O04Rik	-	RIKEN cDNA 4930520O04 gene	ncRNA	0.0	0.0	1.0	0.0	0.0	0.5
Merged-chr4-134503902-1	chr4	134503402	134504402	+	730.0	f1_c57bl6.idr	intron (NM_001285847, intron 2 of 2)	intron (NM_001285847, intron 2 of 2)	6861.0	NM_001285849	71904.0	Mm.142343	NM_027995	ENSMUSG00000037348	Paqr7	2310021M12Rik|AV001994|BB007237|Mpra|PGLP|mPR	progestin and adipoQ receptor family member VII	protein-coding	2.5	1.5	3.5	0.0	4.5	1.0
Merged-chr9-84028346-2	chr9	84027846	84028846	+	730.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199195, intron 8 of 10)	intron (NM_199195, intron 8 of 10)	79565.0	NM_199195	12040.0	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	4.0	6.0	1.5	0.0	3.0	8.5
Merged-chr4-119121469-2	chr4	119120969	119121969	+	730.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011400, intron 2 of 9)	intron (NM_011400, intron 2 of 9)	12724.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129548481-2	chr2	129547981	129548981	+	730.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11879.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	10.0	18.5	6.0	10.5	16.5	13.5
Merged-chr5-35574266-2	chr5	35573766	35574766	+	730.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030208, intron 1 of 10)	intron (NM_030208, intron 1 of 10)	804.0	NM_030208	78890.0	Mm.98522	NM_030208	ENSMUSG00000029097	Trmt44	2310079F23Rik|Mettl19	tRNA methyltransferase 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131076897-4	chr1	131076406	131077406	+	729.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	ORR1D2|LTR|ERVL-MaLR	20937.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0.5	10.0	1.0	3.5	3.0	1.5
Merged-chr5-3370159-3	chr5	3369639	3370639	+	729.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	RLTR11D|LTR|ERVK	26246.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-94601597-2	chr4	94601097	94602097	+	729.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172695, intron 1 of 13)	B2_Mm2|SINE|B2	1650.0	NM_172695	18786.0	Mm.490101	NM_172695	ENSMUSG00000028577	Plaa	2410007N06|AI536418|AU018445|AW208417|D4Ertd618e|PLA2P|PLAP|Ufd3	phospholipase A2, activating protein	protein-coding	0.0	0.0	1.5	0.0	1.0	0.5
Merged-chr9-118699965-2	chr9	118699429	118700429	+	729.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 15 of 27)	intron (NM_133721, intron 15 of 27)	-11763.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	1.5	3.0	1.0	0.0	4.0	0.0
Merged-chr8-106555508-2	chr8	106555008	106556008	+	729.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007665, exon 16 of 16)	3' UTR (NM_007665, exon 16 of 16)	-31635.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-87464412-3	chr14	87463896	87464896	+	729.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253755, intron 3 of 11)	intron (NM_001253755, intron 3 of 11)	47813.0	NM_001253755	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	5.0	2.0	2.5	14.5	5.5	0.0
Merged-chr19-3955266-3	chr19	3954764	3955764	+	729.8222049999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3544.0	NM_028545	73458.0	Mm.482922	NM_028545	ENSMUSG00000037263	Aldh3b3	1700055N04Rik	aldehyde dehydrogenase 3 family, member B3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-58224090-2	chr10	58223590	58224590	+	729.8000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8585.0	NM_001081954	664783.0	Mm.482575	NM_001081954		Dux	AW822073|Dux4|Duxbl|EG664783	double homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116022618-4	chr11	116022111	116023111	+	729.785706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008211, exon 4 of 4)	3' UTR (NM_008211, exon 4 of 4)	1893.0	NM_008211	15081.0	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122428362-3	chr8	122427828	122428828	+	729.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301284, intron 1 of 4)	intron (NM_001301284, intron 1 of 4)	4612.0	NM_001301284	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-64512379-2	chr18	64511879	64512879	+	729.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142950, intron 2 of 14)	intron (NM_001142950, intron 2 of 14)	4178.0	NM_027350	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101945907-2	chr5	101945390	101946390	+	729.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 10 of 66)	L1M1|LINE|L1	124031.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	9.0	21.0	15.5	5.0	8.0	6.0
Merged-chr7-81318960-4	chr7	81318442	81319442	+	729.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 14 of 21)	intron (NM_008803, intron 14 of 21)	26292.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54655912-1	chr6	54655412	54656412	+	729.666687	f0_balb.idr	Intergenic	Intergenic	-25712.0	NM_001289741	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105660217-3	chr1	105659704	105660704	+	729.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013784, intron 1 of 30)	intron (NM_013784, intron 1 of 30)	3472.0	NM_013784	27392.0	Mm.268911	NM_013784	ENSMUSG00000056536	Pign	Gm20308|PIG-N	phosphatidylinositol glycan anchor biosynthesis, class N	protein-coding	9.0	25.0	0.0	7.5	5.5	1.0
Merged-chr1-7399042-2	chr1	7398542	7399542	+	729.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	310122.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132621847-3	chr4	132621281	132622281	+	729.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11D|LTR|ERVK	-17265.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	10.0	16.0	9.0	4.0	8.5	13.0
Merged-chr4-155700639-3	chr4	155700153	155701153	+	729.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4162.0	NM_026899	68991.0	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72553656-3	chr6	72553149	72554149	+	729.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271395, intron 1 of 9)	intron (NM_001271395, intron 1 of 9)	4002.0	NM_001271395	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-16874360-2	chr10	16873860	16874860	+	729.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	221422.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110096704-2	chr7	110096204	110097204	+	729.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-25355.0	NM_001355058	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-28538857-2	chr2	28538357	28539357	+	729.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145836, intron 1 of 17)	intron (NM_001145836, intron 1 of 17)	5393.0	NM_001145836	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136551122-2	chr1	136550625	136551625	+	729.650024	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-73776.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54986879-4	chr18	54986360	54987360	+	729.633301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	3320.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141403531-4	chr7	141403036	141404036	+	729.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011528)	TTS (NM_011528)	10589.0	NM_172116	213350.0	Mm.290953	NM_172116	ENSMUSG00000051007	Gatd1	BC023835|D230016J19Rik|Pddc1	glutamine amidotransferase like class 1 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40787500-4	chr9	40786987	40787987	+	729.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GGAGAA)n|Simple_repeat|Simple_repeat	-13786.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	7.5	25.0	19.5	13.5	30.0	17.5
Merged-chr4-101651443-2	chr4	101650854	101651854	+	729.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_175036, intron 1 of 3)	intron (NM_175036, intron 1 of 3)	3571.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	46.5	99.0	111.0	55.5	131.0	106.0
Merged-chr13-46701698-3	chr13	46701203	46702203	+	729.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175749, exon 12 of 22)	exon (NM_175749, exon 12 of 22)	26146.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-93080022-3	chr7	93079515	93080515	+	729.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021427, exon 1 of 2)	5' UTR (NM_021427, exon 1 of 2)	136.0	NM_021427	58238.0	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	0.5	11.5	1.5	0.0	3.0	2.5
Merged-chr12-98212593-4	chr12	98212066	98213066	+	729.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008079, intron 14 of 16)	L1_Mus3|LINE|L1	46893.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16156131-3	chr19	16155620	16156620	+	729.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	-7978.0	NR_033228	595139.0	Mm.405662	NR_033228		E030024N20Rik	9030417F11Rik|Ppia-ps8	peptidylprolyl isomerase A pseudogene 8	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-16920276-3	chr12	16919753	16920753	+	729.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009072, intron 1 of 32)	L2a|LINE|L2	25275.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	7.5	8.0	1.5	5.5	8.5	5.5
Merged-chr6-83635342-3	chr6	83634865	83635865	+	729.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	20751.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	18.5	52.5	25.5	30.0	13.5	38.5
Merged-chr1-136626226-2	chr1	136625726	136626726	+	729.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_177643, exon 2 of 2)	exon (NM_177643, exon 2 of 2)	1325.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153402591-2	chr2	153402091	153403091	+	729.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001039939, exon 12 of 12)	3' UTR (NM_001039939, exon 12 of 12)	41888.0	NM_001001986	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61553866-2	chr8	61553366	61554366	+	729.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	37303.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57572322-2	chr16	57571822	57572822	+	729.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001177871, exon 2 of 2)	exon (NM_001177871, exon 2 of 2)	23080.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36892477-4	chr17	36891965	36892965	+	729.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2340.0	NM_001172168	195359.0	Mm.32606	NM_001033235	ENSMUSG00000073399	Trim40	Gm319|Gm35|Gm865	tripartite motif-containing 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83526395-2	chr17	83525895	83526895	+	729.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12062.0	NM_001159529	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84245976-4	chr15	84245472	84246472	+	729.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	L1MB8|LINE|L1	13929.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-65127447-2	chr6	65126947	65127947	+	729.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019455, intron 4 of 5)	intron (NM_019455, intron 4 of 5)	17283.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66978772-2	chr9	66978272	66979272	+	729.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3288.0	NM_030717	80907.0	Mm.157882	NM_030717	ENSMUSG00000032370	Lactb	LACT-1|Lact1|Mrpl56	lactamase, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42780926-1	chr10	42780426	42781426	+	729.5	f0_balb.idr	intron (NM_001359285, intron 1 of 19)	MLT1D|LTR|ERVL-MaLR	19430.0	NM_153055	140740.0	Mm.214344	NM_153055	ENSMUSG00000019802	Sec63	5730478J10Rik|AI649014|AW319215	SEC63-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84058726-2	chr17	84058226	84059226	+	729.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19934.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27436924-2	chr7	27436425	27437425	+	729.5	f0_balb.idr|f1_balb.idr	intron (NM_032610, intron 2 of 35)	intron (NM_032610, intron 2 of 35)	9664.0	NM_032610	80297.0	Mm.459123	NM_032610	ENSMUSG00000011751	Sptbn4	1700022P15Rik|5830426A08Rik|ROSA62|SpbIV|Spnb4|dyn|lnd|nmf261|nmf379|qv	spectrin beta, non-erythrocytic 4	protein-coding	5.5	0.5	2.0	7.0	13.5	9.0
Merged-chr5-143549362-2	chr5	143548862	143549862	+	729.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133703, intron 1 of 1)	intron (NM_133703, intron 1 of 1)	656.0	NM_026050	67238.0	Mm.383219	NM_026050	ENSMUSG00000083012	Fam220a	1500026F15Rik|2810453I06Rik|AW047776|Acpin1|Sipar	family with sequence similarity 220, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117814103-2	chr11	117813603	117814603	+	729.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009304, exon 4 of 4)	3' UTR (NM_009304, exon 4 of 4)	4436.0	NM_009304	20973.0	Mm.468228	NM_009304	ENSMUSG00000048277	Syngr2	Clast2|cellugyrin	synaptogyrin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131109700-2	chr1	131109198	131110198	+	729.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11855.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	6.0	0.0	5.5	1.5	1.5	2.0
Merged-chr1-170175744-2	chr1	170175244	170176244	+	729.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305045)	promoter-TSS (NM_001305045)	-780.0	NM_001305045	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84468921-2	chr17	84468421	84469421	+	729.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR6-int|LTR|ERV1	-2713.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22519726-3	chr9	22519219	22520219	+	729.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360259, intron 5 of 22)	intron (NM_001360259, intron 5 of 22)	44004.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67788950-2	chr7	67788450	67789450	+	729.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045954, intron 1 of 2)	intron (NR_045954, intron 1 of 2)	14546.0	NR_045954	73904.0	Mm.70992	NR_045954	ENSMUSG00000097697	4833412C05Rik	Bigheart	RIKEN cDNA 4833412C05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25486374-2	chr14	25485874	25486874	+	729.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	27189.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100225781-2	chr12	100225281	100226281	+	729.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25637.0	NM_001313934	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94122546-2	chr11	94122046	94123046	+	729.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025428, intron 26 of 26)	B3|SINE|B2	78341.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146810121-2	chr5	146809621	146810621	+	729.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-15165.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	61.0	91.0	87.5	15.5	61.0	45.5
Merged-chr7-30534263-2	chr7	30533763	30534763	+	729.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178252, intron 1 of 21)	intron (NM_178252, intron 1 of 21)	797.0	NM_001289670	233071.0	Mm.190704	NM_178252	ENSMUSG00000036882	Arhgap33	AW324378|NOMA-GAP|Snx26|TCGAP	Rho GTPase activating protein 33	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr15-98880638-2	chr15	98880138	98881138	+	729.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026967, intron 1 of 7)	intron (NM_026967, intron 1 of 7)	776.0	NM_026967	69159.0	Mm.259708	NM_026967	ENSMUSG00000023755	Rhebl1	1810036J22Rik|Rheb2	Ras homolog enriched in brain like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11686125-3	chr16	11685600	11686600	+	729.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 18 of 20)	ORR1F|LTR|ERVL-MaLR	-93602.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-72568719-2	chr15	72568219	72569219	+	729.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22440.0	NM_001033876	223604.0	Mm.386856	NM_001033876	ENSMUSG00000036760	Kcnk9	Task3	potassium channel, subfamily K, member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-46704363-1	chr14	46703863	46704863	+	729.5	f0_balb.idr	Intergenic	Intergenic	-30588.0	NR_131909	328385.0	Mm.271545	NR_131909	ENSMUSG00000115015	D330046F09Rik	Gm808	RIKEN cDNA D330046F09 gene	ncRNA	2.0	0.0	0.0	1.0	2.5	0.5
Merged-chr1-105994865-2	chr1	105994365	105995365	+	729.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122675, intron 1 of 12)	intron (NM_001122675, intron 1 of 12)	4459.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-8170848-2	chr14	8170348	8171348	+	729.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024221, intron 5 of 9)	B1_Mm|SINE|Alu	2144.0	NM_024221	68263.0	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38478013-2	chr15	38477513	38478513	+	729.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	12534.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154568424-2	chr2	154567924	154568924	+	729.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007891, intron 1 of 6)	intron (NM_007891, intron 1 of 6)	1002.0	NM_001291105	13555.0	Mm.18036	NM_007891	ENSMUSG00000027490	E2f1	E2F-1|Tg(Wnt1-cre)2Sor|mKIAA4009	E2F transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54985142-2	chr11	54984642	54985642	+	729.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001110211, exon 22 of 25)	exon (NM_001110211, exon 22 of 25)	-22202.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81642637-2	chr10	81642137	81643137	+	729.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_027480, exon 17 of 20)	exon (NM_027480, exon 17 of 20)	-6432.0	NM_001142963	100233208.0	Mm.327168	NM_001142963	ENSMUSG00000096856	Gm10778	-	predicted gene 10778	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-47413540-2	chr4	47413040	47414040	+	729.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009370, exon 9 of 9)	3' UTR (NM_009370, exon 9 of 9)	27324.0	NM_001312869	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134543310-2	chr6	134542810	134543810	+	729.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 1 of 22)	intron (NM_008514, intron 1 of 22)	23603.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	13.0	16.5	39.0	7.0	9.5	18.0
Merged-chr9-37350457-2	chr9	37349957	37350957	+	729.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-2065.0	NM_001081429	245902.0	Mm.390150	NM_001081429	ENSMUSG00000034303	Ccdc15	A630039F14Rik|D030074L19	coiled-coil domain containing 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120314120-2	chr2	120313620	120314620	+	729.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024145)	promoter-TSS (NM_001024145)	45.0	NM_001024145	271844.0	Mm.24880	NM_001024145	ENSMUSG00000046971	Pla2g4f	4732472I07Rik|Gm647|Pla2zeta	phospholipase A2, group IVF	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46599874-3	chr18	46599385	46600385	+	729.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010120, intron 2 of 2)	MLT1D|LTR|ERVL-MaLR	2181.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-104444305-2	chr11	104443805	104444805	+	729.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 2 of 14)	MT2B2|LTR|ERVL	-2014.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92875269-2	chr16	92874769	92875769	+	729.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-49195.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-18798812-2	chr5	18798312	18799312	+	729.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	427743.0	NR_102341	70832.0	Mm.398993	NR_102341	ENSMUSG00000097626	4921504A21Rik	-	RIKEN cDNA 4921504A21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-33271828-4	chr4	33271246	33272246	+	729.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-22959.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24479054-3	chr13	24478571	24479571	+	729.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	63949.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-103762396-3	chr7	103761903	103762903	+	729.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5053.0	NM_147098	259102.0	Mm.377844	NM_147098	ENSMUSG00000050281	Olfr630	MOR17-1	olfactory receptor 630	protein-coding	5.5	3.0	9.0	0.0	0.0	0.0
Merged-chr2-128717623-3	chr2	128717135	128718135	+	729.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	18720.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	15.0	47.5	29.5	21.5	20.5	16.0
Merged-chr2-49727397-4	chr2	49726899	49727899	+	729.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008449, intron 12 of 25)	intron (NM_008449, intron 12 of 25)	-60287.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63135029-2	chr9	63134529	63135529	+	729.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11951.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105567805-2	chr5	105567305	105568305	+	729.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	48334.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19082274-2	chr7	19081774	19082774	+	729.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010058, intron 4 of 4)	intron (NM_010058, intron 4 of 4)	-1575.0	NR_126095	13400.0	Mm.6529	NM_032418	ENSMUSG00000030409	Dmpk	DM|DMK|Dm15|MDPK|MT-PK	dystrophia myotonica-protein kinase	protein-coding	0.0	9.5	0.0	0.0	0.5	1.5
Merged-chr11-54988151-3	chr11	54987660	54988660	+	729.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 19 of 24)	B3A|SINE|B2	-25220.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134790215-3	chr6	134789697	134790697	+	729.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130447, intron 1 of 6)	intron (NM_130447, intron 1 of 6)	-2163.0	NR_151454	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	36.5	84.5	34.5	11.5	25.0	22.5
Merged-chr7-67529258-3	chr7	67528746	67529746	+	729.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028144, intron 8 of 8)	intron (NR_028144, intron 8 of 8)	115990.0	NM_175124	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	5.5	22.5	14.0	4.0	6.5	11.0
Merged-chr9-47699278-2	chr9	47698778	47699778	+	729.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	118930.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	2.0	27.0	12.5	6.5	32.0	14.0
Merged-chr19-24176932-2	chr19	24176481	24177481	+	729.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011597, intron 1 of 22)	intron (NM_011597, intron 1 of 22)	-2792.0	NM_001198985	21873.0	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	5.0	1.5	0.0	4.0	9.5	0.0
Merged-chr1-151001565-3	chr1	151001081	151002081	+	729.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8146.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-52011779-2	chr11	52011279	52012279	+	729.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166657, intron 3 of 7)	intron (NM_001166657, intron 3 of 7)	7558.0	NM_001166653	213084.0	Mm.280557	NM_153785	ENSMUSG00000020389	Cdkl3	AI852479|B230379H01Rik	cyclin-dependent kinase-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-22424863-3	chr17	22424359	22425359	+	729.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331197, intron 1 of 5)	RLTR9E|LTR|ERVK	657.0	NM_001331198	74149.0	Mm.30767	NM_198003	ENSMUSG00000071266	Zfp946	1300003B13Rik	zinc finger protein 946	protein-coding	0.0	2.0	1.0	0.0	0.5	0.0
Merged-chr12-84317467-3	chr12	84316980	84317980	+	729.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252582, intron 1 of 7)	CpG	621.0	NM_001252583	52708.0	Mm.255150	NM_144833	ENSMUSG00000042472	Zfp410	Apa1|D12Ertd748e|Znf410	zinc finger protein 410	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-41168775-3	chr9	41168267	41169267	+	729.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-10705.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	1.5	4.5	2.0	13.5	10.0	7.0
Merged-chr14-33101829-3	chr14	33101324	33102324	+	729.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146022, intron 20 of 58)	intron (NM_001146022, intron 20 of 58)	83242.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-118767745-3	chr13	118767239	118768239	+	729.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008002, intron 1 of 2)	intron (NM_008002, intron 1 of 2)	53040.0	NM_008002	14165.0	Mm.317323	NM_008002	ENSMUSG00000021732	Fgf10	AEY17|BB213776|Fgf-10|Gsfaey17	fibroblast growth factor 10	protein-coding	16.0	11.0	7.5	13.5	6.0	22.0
Merged-chr6-32539313-3	chr6	32538807	32539807	+	729.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 1 of 31)	intron (NM_175750, intron 1 of 31)	28166.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-75772773-2	chr12	75772273	75773273	+	729.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-37044.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84570632-3	chr3	84570142	84571142	+	729.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293801, intron 1 of 7)	intron (NM_001293801, intron 1 of 7)	11983.0	NM_001293801	99889.0	Mm.316536	NM_001081093	ENSMUSG00000074513	Arfip1	2310030I10Rik|Arfaptin|D3Ertd598e	ADP-ribosylation factor interacting protein 1	protein-coding	3.5	2.5	2.0	3.5	2.5	6.5
Merged-chr10-67629795-3	chr10	67629316	67630316	+	729.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57857.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119220405-3	chr9	119219918	119220918	+	729.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_033303)	TTS (NR_033303)	11274.0	NR_033303	109280.0	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	0.0	2.0	1.0	0.0	2.0	5.0
Merged-chr12-70698499-3	chr12	70697984	70698984	+	729.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127030.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64666100-3	chr17	64665601	64666601	+	729.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 6 of 21)	intron (NM_008549, intron 6 of 21)	64452.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91000735-2	chr16	91000235	91001235	+	729.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045515, intron 2 of 32)	B1F|SINE|Alu	10360.0	NM_001045515	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-75342968-2	chr1	75342468	75343468	+	729.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17324.0	NM_010043	13346.0	Mm.6712	NM_010043	ENSMUSG00000026208	Des	-	desmin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103088799-3	chr14	103088301	103089301	+	729.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360342, intron 4 of 4)	ORR1E|LTR|ERVL-MaLR	10203.0	NM_001360341	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-36978647-3	chr10	36978186	36979186	+	729.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008229, intron 1 of 13)	RLTR31B2|LTR|ERVK	4142.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67137489-2	chr10	67136989	67137989	+	729.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 1 of 25)	intron (NM_207221, intron 1 of 25)	10231.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-57546911-1	chr12	57546411	57547411	+	729.25	f0_balb.idr	promoter-TSS (NM_008259)	promoter-TSS (NM_008259)	-800.0	NM_008259	15375.0	Mm.4578	NM_008259	ENSMUSG00000035451	Foxa1	Hnf-3a|Hnf3a|Tcf-3a|Tcf3a	forkhead box A1	protein-coding	2.5	0.5	0.5	2.0	1.5	0.0
Merged-chr13-58460062-2	chr13	58459562	58460562	+	729.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger10|DNA|TcMar-Tigger	-56719.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13562453-2	chr8	13561953	13562953	+	729.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080781)	promoter-TSS (NM_001080781)	8.0	NM_025601	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103981879-2	chr11	103981379	103982379	+	729.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007477, intron 4 of 4)	intron (NM_007477, intron 4 of 4)	15008.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125382213-2	chr5	125381769	125382769	+	729.25	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	7748.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53144944-1	chr18	53144444	53145444	+	729.25	f0_c57.idr	Intergenic	B2_Mm2|SINE|B2	-31348.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	6.5	12.0	7.5	0.5	1.0	1.0
Merged-chr5-22519919-3	chr5	22519416	22520416	+	729.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011959, intron 11 of 13)	intron (NM_011959, intron 11 of 13)	9114.0	NR_004442	100042049.0	Mm.21724	NR_004442		Gm15421	-	ribosomal protein L22 like 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54685353-3	chr13	54684868	54685868	+	729.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027396, intron 1 of 10)	intron (NR_027396, intron 1 of 10)	2440.0	NM_001146025	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90589111-3	chr5	90588627	90589627	+	729.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252661, intron 12 of 13)	intron (NM_001252661, intron 12 of 13)	27918.0	NM_001252661	622307.0	Mm.389654	NM_001252661	ENSMUSG00000070690	5830473C10Rik	Arg|Gm17754	RIKEN cDNA 5830473C10 gene	protein-coding	2.0	13.5	0.0	0.0	2.0	0.0
Merged-chr1-74077546-3	chr1	74077056	74078056	+	729.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289895, intron 2 of 32)	intron (NM_001289895, intron 2 of 32)	46891.0	NM_027884	21961.0	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101619668-2	chr7	101619168	101620168	+	729.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38507.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	4.0	5.0	15.0	5.5	13.0	7.5
Merged-chr7-101415262-2	chr7	101414784	101415784	+	729.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-6407.0	NM_001008548	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	3.0	0.0	1.0	0.0	0.0	0.0
Merged-chr14-48189519-2	chr14	48189010	48190010	+	729.166626	f0_balb.idr|f1_balb.idr	intron (NM_033602, intron 2 of 5)	intron (NM_033602, intron 2 of 5)	-9206.0	NR_003630	624367.0	Mm.445185	NM_001037921	ENSMUSG00000021846	Gm6498	EG624367	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	2.0	0.0	0.0	6.5	3.5	0.0
Merged-chr4-141347636-2	chr4	141347136	141348136	+	729.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-20556.0	NM_001085513	277743.0	Mm.294614	NM_001085513	ENSMUSG00000006218	Fam131c	Gm693	family with sequence similarity 131, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-32086447-2	chr14	32085947	32086947	+	729.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104303)	promoter-TSS (NR_104303)	719.0	NM_145460	218885.0	Mm.202257	NM_145460	ENSMUSG00000021906	Oxnad1	2410002F01Rik|AW492292|BC019806	oxidoreductase NAD-binding domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123898726-2	chr5	123898258	123899258	+	729.150024	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-8517.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	4.0	3.0	1.5	0.0	6.5	10.0
Merged-chr11-114654925-2	chr11	114654425	114655425	+	729.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13618.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54698162-2	chr12	54697662	54698662	+	729.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-2268.0	NM_025456	66266.0	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding	1.5	0.5	6.0	3.0	3.0	4.0
Merged-chr3-14848984-3	chr3	14848446	14849446	+	729.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14592.0	NM_007606	12350.0	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	1.5	0.0	0.5	0.0	0.0	0.0
Merged-chr11-98782100-5	chr11	98781610	98782610	+	729.099976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-6733.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87630044-2	chr11	87629544	87630544	+	729.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045527, intron 2 of 5)	intron (NM_001045527, intron 2 of 5)	12880.0	NM_001045527	327992.0	Mm.390371	NM_001045527	ENSMUSG00000070345	Hsf5	Gm739|MLZ-220	heat shock transcription factor family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120888183-2	chr5	120887683	120888683	+	729.083313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011852)	promoter-TSS (NM_011852)	-570.0	NR_126529	23960.0	Mm.389688	NM_011852	ENSMUSG00000066861	Oas1g	AI449562|L2|Mmu-L|Mmu-L2|Oas1b|Oias-1|Oias1	2'-5' oligoadenylate synthetase 1G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100816316-4	chr11	100815817	100816817	+	729.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113563, intron 1 of 18)	intron (NM_001113563, intron 1 of 18)	6253.0	NM_011489	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-31042065-4	chr9	31041548	31042548	+	729.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001115130, intron 1 of 5)	MTE-int|LTR|ERVL-MaLR	11404.0	NM_172765	235132.0	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-93810603-3	chr13	93810108	93811108	+	729.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009712, intron 4 of 7)	L1_Mus2|LINE|L1	19831.0	NR_049198	100885837.0		NR_049198	ENSMUSG00000093480	Mir5624	Gm25075|mir-5624|mmu-mir-5624	microRNA 5624	ncRNA	30.5	6.0	9.5	13.0	3.5	7.5
Merged-chr1-172095587-3	chr1	172095072	172096072	+	729.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009938, intron 6 of 32)	intron (NM_009938, intron 6 of 32)	-12823.0	NM_021607	59287.0	Mm.218203	NM_021607	ENSMUSG00000003458	Ncstn	9430068N19Rik|AA727311|Aph2|D1Dau13e|Kiaa0253|Nct|mKIAA0253	nicastrin	protein-coding	21.0	60.0	15.5	17.0	36.5	15.5
Merged-chr11-88994558-3	chr11	88994094	88995094	+	729.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-4809.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	5.0	0.0	1.0	3.5	0.0	1.5
Merged-chr14-30192946-3	chr14	30192425	30193425	+	729.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 4 of 46)	intron (NM_001083616, intron 4 of 46)	160561.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	0.0	12.5	6.0	8.0	1.5	1.0
Merged-chr8-104370096-2	chr8	104369596	104370596	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153582, intron 1 of 3)	L1MC4|LINE|L1	25711.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80194638-2	chr11	80194138	80195138	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028019, intron 3 of 4)	RMER19B|LTR|ERVK	10766.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	1.5	3.0	15.5	7.0	15.0	12.5
Merged-chr8-123027030-2	chr8	123026530	123027530	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	15254.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-65371203-1	chr7	65370703	65371703	+	729.0	f0_balb.idr	promoter-TSS (NM_001163574)	promoter-TSS (NM_001163574)	41.0	NM_001163574	21872.0	Mm.4342	NM_009386	ENSMUSG00000030516	Tjp1	ZO1	tight junction protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25927734-2	chr17	25927234	25928234	+	729.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001291025, exon 12 of 12)	exon (NM_001291025, exon 12 of 12)	-8020.0	NM_139154	224624.0	Mm.328872	NM_139154	ENSMUSG00000025730	Rab40c	RAR3	Rab40C, member RAS oncogene family	protein-coding	0.0	1.5	0.0	0.0	0.0	1.0
Merged-chr9-116143731-1	chr9	116143231	116144231	+	729.0	f1_balb.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	31632.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	14.0	1.5	6.5	5.0	19.0	9.0
Merged-chr3-83832229-1	chr3	83831729	83832729	+	729.0	f1_balb.idr	Intergenic	Intergenic	9379.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0.0	4.0	5.0	0.0	0.0	0.5
Merged-chr4-133839475-2	chr4	133838975	133839975	+	729.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35256.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56183496-1	chr17	56182996	56183996	+	729.0	f0_balb.idr	intron (NM_080837, intron 1 of 5)	intron (NM_080837, intron 1 of 5)	424.0	NM_080837	28106.0	Mm.294870	NM_080837	ENSMUSG00000019579	Mydgf	D17Wsu104e|Il25|Ly6elg	myeloid derived growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102045234-3	chr5	102044694	102045694	+	729.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	24727.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103831193-2	chr14	103830693	103831693	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276296, intron 1 of 7)	intron (NM_001276296, intron 1 of 7)	12508.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117202214-2	chr11	117201714	117202714	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 1 of 11)	intron (NM_001113486, intron 1 of 11)	2553.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10333645-1	chr19	10333145	10334145	+	729.0	f1_c57bl6.idr	Intergenic	Intergenic	-28768.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	4.5	0.0	1.5	0.0	0.0	0.0
Merged-chr1-36299223-2	chr1	36298723	36299723	+	729.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8510.0	NM_001172206	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-171002548-2	chr2	171002048	171003048	+	729.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	270741.0	NM_001163686	76829.0	Mm.41633	NM_029761	ENSMUSG00000027560	Dok5	2700055C10Rik	docking protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141425877-3	chr4	141425390	141426390	+	729.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013868)	TTS (NM_013868)	5111.0	NM_013868	29818.0	Mm.46181	NM_013868	ENSMUSG00000006221	Hspb7	27kDa|Hsp25-2|cvHsp	heat shock protein family, member 7 (cardiovascular)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51604803-2	chr11	51604303	51605303	+	729.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010448, exon 4 of 7)	exon (NM_010448, exon 4 of 7)	2078.0	NM_001048061	15384.0	Mm.256875	NM_010448	ENSMUSG00000020358	Hnrnpab	3010025C11Rik|CBF-A|Cgbfa|Hnrpab	heterogeneous nuclear ribonucleoprotein A/B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-42366298-2	chr12	42365798	42366798	+	729.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	667919.0	NR_148724	102636207.0		NR_148724		Gm33340	Gm40882	predicted gene, 33340	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4875948-2	chr16	4875448	4876448	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145359, intron 2 of 2)	intron (NM_145359, intron 2 of 2)	3903.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70139953-2	chr12	70139453	70140453	+	729.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14218.0	NM_001195033	100504285.0	Mm.291105	NM_001195033	ENSMUSG00000090121	Abhd12b	Gm804	abhydrolase domain containing 12B	protein-coding	15.5	26.5	7.0	23.0	27.0	9.0
Merged-chr10-81567667-2	chr10	81567167	81568167	+	729.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7620.0	NM_019725	21886.0	Mm.38608	NM_019725	ENSMUSG00000034771	Tle2	Grg2|mKIAA4188	transducin-like enhancer of split 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34030520-2	chr10	34030020	34031020	+	729.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7077.0	NM_001162937	692132.0	Mm.383415	NM_001162937	ENSMUSG00000071340	Trappc3l	Bet3l	trafficking protein particle complex 3 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102053987-1	chr11	102053487	102054487	+	729.0	f1_c57bl6.idr	intron (NM_001160711, intron 7 of 7)	intron (NM_001160711, intron 7 of 7)	12476.0	NM_001160713	52685.0	Mm.266885	NM_027987	ENSMUSG00000017309	Cd300lg	2310016B05Rik|Clm9|D11Ertd736e	CD300 molecule like family member G	protein-coding	1.5	0.5	2.5	0.0	4.0	0.5
Merged-chr5-137670453-2	chr5	137669953	137670953	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303271, intron 1 of 12)	B3|SINE|B2	14300.0	NM_001303271	231801.0	Mm.260869	NM_145566	ENSMUSG00000029722	Agfg2	A630095P14Rik|Hrbl|RAB-R|RABR	ArfGAP with FG repeats 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51492833-3	chr10	51492342	51493342	+	729.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291894, intron 4 of 8)	intron (NM_001291894, intron 4 of 8)	1944.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3645631-2	chr4	3645131	3646131	+	729.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10875.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	1.5	0.5	1.5	0.5	1.5	0.0
Merged-chr7-92893716-4	chr7	92893225	92894225	+	729.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028243, intron 1 of 8)	B2_Mm2|SINE|B2	18472.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-8556413-2	chr1	8555913	8556913	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027671, intron 14 of 20)	Lx3A|LINE|L1	743464.0	NM_001290393	71096.0	Mm.336395	NM_027671	ENSMUSG00000025909	Sntg1	4933426D16Rik|G1SYN|SYN4	syntrophin, gamma 1	protein-coding	1.5	0.0	0.0	2.0	11.0	0.0
Merged-chr14-55601315-6	chr14	55600798	55601798	+	729.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_194346, exon 16 of 21)	exon (NM_194346, exon 16 of 21)	-2687.0	NM_008394	16391.0	Mm.2032	NM_008394	ENSMUSG00000002325	Irf9	Irf-9|Isgf3g|p48	interferon regulatory factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-149102349-1	chr3	149101849	149102849	+	729.0	f0_balb.idr	Intergenic	Intergenic	-147714.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	2.0	3.5	5.0	1.0	4.5	7.0
Merged-chr19-60756586-2	chr19	60756097	60757097	+	729.0	f0_balb.idr|f1_balb.idr	exon (NM_178421, exon 1 of 1)	exon (NM_178421, exon 1 of 1)	610.0	NM_178421	332397.0	Mm.186390	NM_178421	ENSMUSG00000072437	Nanos1	NOS-1	nanos C2HC-type zinc finger 1	protein-coding	0.0	2.5	4.0	0.0	0.0	1.5
Merged-chr14-104814305-2	chr14	104813805	104814805	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_015593, intron 2 of 5)	intron (NR_015593, intron 2 of 5)	175158.0	NR_015593	320249.0	Mm.320725	NR_015593	ENSMUSG00000115432	D130009I18Rik	-	RIKEN cDNA D130009I18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114815809-2	chr11	114815309	114816309	+	729.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16885.0	NM_181749	217302.0	Mm.269127	NM_181749	ENSMUSG00000034677	Gpr142	PGR2	G protein-coupled receptor 142	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63600116-2	chr4	63599616	63600616	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028583, intron 1 of 1)	RMER13A2|LTR|ERVK	648.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59768778-2	chr13	59768278	59769278	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026921, intron 1 of 3)	intron (NM_026921, intron 1 of 3)	1011.0	NM_026921	69046.0	Mm.7884	NM_026921	ENSMUSG00000044792	Isca1	1810010A06Rik|Hbld2	iron-sulfur cluster assembly 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124947466-1	chr6	124946966	124947966	+	729.0	f0_balb.idr	Intergenic	L1MEf|LINE|L1	16078.0	NM_001170341	30853.0	Mm.29737	NM_145385	ENSMUSG00000030120	Mlf2	AI256856|AU018944|C77284	myeloid leukemia factor 2	protein-coding	0.0	2.5	6.0	0.0	5.0	1.0
Merged-chr7-19001678-2	chr7	19001178	19002178	+	729.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145579)	TTS (NM_145579)	-2387.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97209841-2	chr3	97209341	97210341	+	729.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029933, exon 8 of 10)	exon (NM_029933, exon 8 of 10)	17523.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99267319-2	chr10	99266819	99267819	+	729.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026268, exon 3 of 3)	3' UTR (NM_026268, exon 3 of 3)	4088.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139197152-1	chr4	139196652	139197652	+	729.0	f0_balb.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	3041.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	43.0	113.5	35.5	38.5	97.5	61.5
Merged-chr3-121569426-2	chr3	121568926	121569926	+	729.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37082.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59885058-2	chr10	59884558	59885558	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019965, intron 1 of 8)	intron (NM_019965, intron 1 of 8)	5467.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126506473-2	chr8	126505980	126506980	+	729.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31415.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	7.0	19.0	3.0	12.0	16.5	10.0
Merged-chr5-102048314-2	chr5	102047814	102048814	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	21607.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87262024-2	chr17	87261524	87262524	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139295, intron 1 of 3)	ORR1A2|LTR|ERVL-MaLR	3923.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	12.0	4.0	3.0	6.5	3.5	6.0
Merged-chr18-13372399-2	chr18	13371899	13372899	+	729.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	365409.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr16-30365693-2	chr16	30365201	30366201	+	729.0	f0_balb.idr|f0_c57.idr	intron (NM_001128096, intron 3 of 33)	(TG)n|Simple_repeat|Simple_repeat	22829.0	NM_001128094	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	2.0	3.5	6.0	1.5	1.5	4.5
Merged-chr7-31099022-2	chr7	31098522	31099522	+	729.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001276269, exon 13 of 13)	3' UTR (NM_001276269, exon 13 of 13)	11975.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	1.0	0.0	0.5	0.0	1.5	0.0
Merged-chr7-125580634-1	chr7	125580134	125581134	+	729.0	f1_balb.idr	Intergenic	IMPB_01|Satellite|Satellite	-22795.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	3.0	6.5	11.5	1.5	17.5	26.0
Merged-chr18-62976747-2	chr18	62976247	62977247	+	729.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1169.0	NM_028017	108123.0	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124606369-2	chr2	124605869	124606869	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-3927.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42258562-2	chr10	42258062	42259062	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	18180.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121789779-2	chr11	121789279	121790279	+	729.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40439.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-51844693-1	chr12	51844193	51845193	+	729.0	f0_c57.idr	Intergenic	Intergenic	-15157.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	21.5	29.5	41.5	22.5	29.5	41.0
Merged-chr2-167981923-2	chr2	167981423	167982423	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080708, intron 20 of 21)	intron (NM_001080708, intron 20 of 21)	28670.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-26777635-3	chr10	26777159	26778159	+	729.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	5147.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	5.0	2.0	1.0	0.0	14.0	2.0
Merged-chr11-60880139-2	chr11	60879639	60880639	+	729.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1101.0	NM_001168507	216821.0	Mm.28063	NM_173453	ENSMUSG00000043284	Tmem11	5730466P16Rik|AA409091	transmembrane protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-8242533-2	chr14	8242033	8243033	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053115, intron 12 of 14)	intron (NM_053115, intron 12 of 14)	16306.0	NM_001161667	93732.0	Mm.28700	NM_053115	ENSMUSG00000021751	Acox2	THCCox	acyl-Coenzyme A oxidase 2, branched chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62166316-2	chr18	62165816	62166816	+	729.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13665.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67115649-2	chr17	67115157	67116157	+	728.958374	f0_balb.idr|f1_balb.idr	intron (NM_001357625, intron 2 of 32)	B3|SINE|B2	-89422.0	NR_049205	100885844.0		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	1.0	8.5	3.5	14.0	13.5	27.5
Merged-chr1-54832882-3	chr1	54832321	54833321	+	728.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	(GGGA)n|Simple_repeat|Simple_repeat	93566.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr19-4439453-3	chr19	4438921	4439921	+	728.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045990)	promoter-TSS (NR_045990)	22.0	NM_007485	11854.0	Mm.27701	NM_007485	ENSMUSG00000041845	Rhod	AI326383|Arhd|Rho|RhoHP1|RhoM	ras homolog family member D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170154374-4	chr2	170153846	170154846	+	728.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11671.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30551658-2	chr14	30551158	30552158	+	728.916687	f1_balb.idr|f1_c57bl6.idr	intron (NM_009388, intron 1 of 13)	intron (NM_009388, intron 1 of 13)	2527.0	NM_009388	21881.0	Mm.290692	NM_009388	ENSMUSG00000021957	Tkt	p68	transketolase	protein-coding	9.0	3.0	4.0	9.0	2.5	1.5
Merged-chr5-140396764-3	chr5	140396271	140397271	+	728.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7463.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55364536-3	chr4	55364029	55365029	+	728.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009011, intron 1 of 9)	B3|SINE|B2	14487.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	8.5	25.5	18.5	3.5	16.0	23.5
Merged-chr16-44141565-5	chr16	44141025	44142025	+	728.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028108, intron 1 of 4)	intron (NM_028108, intron 1 of 4)	1716.0	NM_028108	72117.0	Mm.278726	NM_028108	ENSMUSG00000022698	Naa50	2600005K24Rik|2810441M03Rik|AW112078|Mak3|Mak3p|Nat13|Nat5|San	N(alpha)-acetyltransferase 50, NatE catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34571103-4	chr19	34570541	34571541	+	728.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008332, intron 2 of 2)	RMER17C|LTR|ERVK	-12488.0	NM_010501	15959.0	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-194994447-2	chr1	194993947	194994947	+	728.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17488.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70520101-2	chr11	70519601	70520601	+	728.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_146020, exon 3 of 3)	exon (NM_146020, exon 3 of 3)	892.0	NM_146020	216871.0	Mm.22551	NM_146020	ENSMUSG00000046811	Gltpd2	C730027E14Rik	glycolipid transfer protein domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59826429-2	chr15	59825899	59826899	+	728.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31440.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.5	1.0	0.0	0.0	1.0	0.0
Merged-chr5-145179818-2	chr5	145179429	145180429	+	728.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291249, intron 7 of 7)	intron (NM_001291249, intron 7 of 7)	11663.0	NM_020582	57423.0	Mm.133551	NM_020582	ENSMUSG00000038690	Atp5j2	1110019H14Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2	protein-coding	13.0	18.0	18.5	13.0	28.0	32.0
Merged-chr4-62730099-2	chr4	62729599	62730599	+	728.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	56125.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102607820-2	chr4	102607321	102608321	+	728.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177980)	TTS (NM_001177980)	17978.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	20.0	8.0	8.5	18.0	21.5	14.5
Merged-chr3-135200733-3	chr3	135200214	135201214	+	728.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11849.0	NM_173762	229841.0	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-10535033-3	chr14	10534534	10535534	+	728.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 4 of 9)	RMER10A|LTR|ERVL	-81576.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34642494-3	chr2	34641946	34642946	+	728.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112786.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41291509-3	chr19	41290980	41291980	+	728.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 13 of 16)	B3A|SINE|B2	-27476.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29609269-4	chr6	29608786	29609786	+	728.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361290, intron 1 of 23)	CpG	563.0	NM_177296	320938.0	Mm.276381	NM_177296	ENSMUSG00000012535	Tnpo3	5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133	transportin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136661121-3	chr1	136660619	136661619	+	728.799988	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-22277.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49907530-3	chr16	49907029	49908029	+	728.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 9 of 9)	intron (NM_010581, intron 9 of 9)	-48301.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14523236-3	chr8	14522752	14523752	+	728.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 3 of 15)	L1_Mur2|LINE|L1	-365284.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	11.0	11.5	13.5	3.5	25.0	4.5
Merged-chr4-53093355-2	chr4	53092855	53093855	+	728.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 8 of 49)	intron (NM_013454, intron 8 of 49)	66540.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60823369-2	chr2	60822869	60823869	+	728.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	58069.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125184079-3	chr8	125183560	125184560	+	728.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 9 of 12)	intron (NM_174854, intron 9 of 12)	129865.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	6.0	10.5	6.0	10.5	11.5	4.5
Merged-chr19-4441563-3	chr19	4441128	4442128	+	728.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045989, intron 1 of 4)	intron (NR_045989, intron 1 of 4)	2069.0	NR_045989	319314.0	Mm.393810	NR_045989	ENSMUSG00000087132	A930001C03Rik	-	RIKEN cDNA A930001C03 gene	ncRNA	7.5	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117279021-2	chr8	117278521	117279521	+	728.68335	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	22002.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3942419-3	chr19	3941926	3942926	+	728.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001161428, exon 6 of 10)	exon (NM_001161428, exon 6 of 10)	7240.0	NM_001161428	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67760829-3	chr10	67760316	67761316	+	728.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	151846.0	NM_178679	216049.0	Mm.268346	NM_178679	ENSMUSG00000037855	Zfp365	AI839779|AV340892|DBZ|Su48|Znf365|talanin	zinc finger protein 365	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-50609687-3	chr10	50609190	50610190	+	728.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 3 of 41)	intron (NM_198007, intron 3 of 41)	17021.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47515786-3	chr14	47515286	47516286	+	728.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027414, intron 4 of 5)	L1MC5|LINE|L1	43225.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	70.0	209.5	156.5	61.0	126.5	83.0
Merged-chr15-36876106-3	chr15	36875608	36876608	+	728.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79179.0	NM_001253806	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-27384096-1	chr10	27383596	27384596	+	728.666687	f1_balb.idr	intron (NM_008481, intron 4 of 63)	intron (NM_008481, intron 4 of 63)	-5770.0	NR_131034	75855.0	Mm.402080	NR_131034	ENSMUSG00000101636	4930579H20Rik	-	RIKEN cDNA 4930579H20 gene	ncRNA	1.5	0.0	4.0	18.5	8.5	9.0
Merged-chr13-101679558-3	chr13	101679058	101680058	+	728.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13072.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	2.5	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108505504-3	chr6	108505010	108506010	+	728.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 53 of 61)	intron (NM_010585, intron 53 of 61)	15767.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173812092-3	chr2	173811586	173812586	+	728.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74515.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101260576-3	chr11	101260087	101261087	+	728.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175638)	promoter-TSS (NM_175638)	20.0	NM_175638	69847.0	Mm.23656	NM_175638	ENSMUSG00000035112	Wnk4	2010002J11Rik|Pha2b|Prkwnk4	WNK lysine deficient protein kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-113932770-2	chr9	113932270	113933270	+	728.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_013699, intron 2 of 15)	intron (NM_013699, intron 2 of 15)	1836.0	NM_013699	22221.0	Mm.28052	NM_013699	ENSMUSG00000009741	Ubp1	Cp2b|LBP-1a|LBP-1b|NF2d9	upstream binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118694656-2	chr9	118694156	118695156	+	728.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 14 of 27)	intron (NM_133721, intron 14 of 27)	-17036.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.5	3.0	0.5	1.5	6.5	1.0
Merged-chr11-116009006-2	chr11	116008506	116009506	+	728.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133663)	TTS (NM_133663)	3713.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80083440-2	chr7	80082919	80083919	+	728.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 2 of 4)	B4|SINE|B4	-8162.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	7.0	9.0	4.5	5.0	10.5	1.0
Merged-chr10-81140303-2	chr10	81139803	81140803	+	728.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_010731, intron 1 of 2)	intron (NM_010731, intron 1 of 2)	4032.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165367204-3	chr2	165366714	165367714	+	728.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5095.0	NM_001005425	381405.0	Mm.296323	NM_001005425	ENSMUSG00000056824	Zfp663	Gm1008	zinc finger protein 663	protein-coding	0.0	10.0	4.5	0.0	2.0	3.0
Merged-chr13-102887681-2	chr13	102887181	102888181	+	728.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 4 of 28)	B1_Mur1|SINE|Alu	127426.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121949001-2	chr8	121948501	121949501	+	728.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1491.0	NM_016812	53325.0	Mm.287163	NM_016812	ENSMUSG00000025316	Banp	AA408158|SMAR1	BTG3 associated nuclear protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25464753-3	chr14	25464248	25465248	+	728.577759	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	5563.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120434035-3	chr9	120433533	120434533	+	728.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144557, intron 10 of 16)	intron (NM_144557, intron 10 of 16)	-58573.0	NM_026892	68969.0	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91074313-2	chr1	91073813	91074813	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 3 of 22)	intron (NM_008515, intron 3 of 22)	20869.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-99093763-2	chr11	99093263	99094263	+	728.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4457.0	NM_172564	217169.0	Mm.262067	NM_172564	ENSMUSG00000017607	Tns4	9930017A07Rik|AA589547|AU016405|Cten	tensin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191880353-4	chr1	191879865	191880865	+	728.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26416.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	14.5	18.5	7.5	13.0	33.5	19.5
Merged-chr4-141554418-2	chr4	141553918	141554918	+	728.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	8256.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	2.0	22.0	16.0	0.5	13.0	7.5
Merged-chr6-102354354-2	chr6	102353854	102354854	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008779, intron 3 of 21)	RLTR17|LTR|ERVK	88254.0	NR_131017	75893.0	Mm.2968	NR_131017	ENSMUSG00000107563	4930587E11Rik	4930523E13Rik|Gm44188	RIKEN cDNA 4930587E11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139394116-2	chr5	139393616	139394616	+	728.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001362206, exon 2 of 2)	3' UTR (NM_001362206, exon 2 of 2)	4212.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86439716-2	chr6	86439216	86440216	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243741, intron 1 of 9)	B3A|SINE|B2	1070.0	NM_001243741	232196.0	Mm.404040	NM_146170	ENSMUSG00000046679	C87436	-	expressed sequence C87436	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54794542-3	chr6	54794076	54795076	+	728.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-22340.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	1.5	0.0	5.0	4.5	2.5	4.0
Merged-chr14-55878606-2	chr14	55878106	55879106	+	728.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019820)	TTS (NM_019820)	5650.0	NM_019820	56410.0	Mm.97163	NM_019820	ENSMUSG00000040380	Cbln3	-	cerebellin 3 precursor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36025580-2	chr17	36025080	36026080	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_015618, intron 1 of 1)	intron (NR_015618, intron 1 of 1)	-5020.0	NM_008207	15042.0	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	5.5	2.5	1.0	11.5	3.5	1.0
Merged-chr1-58424579-2	chr1	58424079	58425079	+	728.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027853)	promoter-TSS (NR_027853)	-491.0	NM_001042634	12747.0	Mm.1761	NM_009905	ENSMUSG00000026034	Clk1	STY	CDC-like kinase 1	protein-coding	3.5	23.0	12.5	12.0	73.0	50.5
Merged-chr10-19992032-2	chr10	19991545	19992545	+	728.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	57519.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	1.5	2.5	2.0	6.5	6.5	5.0
Merged-chr11-47064927-2	chr11	47064427	47065427	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 6 of 7)	intron (NM_011891, intron 6 of 7)	254128.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	58.0	65.5	66.5	39.0	75.5	67.5
Merged-chr7-28153081-2	chr7	28152581	28153581	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164655, intron 11 of 19)	intron (NM_001164655, intron 11 of 19)	-16667.0	NM_007991	14113.0	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120047731-2	chr11	120047231	120048231	+	728.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198785)	promoter-TSS (NM_001198785)	-586.0	NM_007377	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35042537-2	chr9	35042040	35043040	+	728.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-74188.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	1.5	5.0	8.0	0.5	7.5	4.5
Merged-chr3-84037918-2	chr3	84037418	84038418	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172681, intron 2 of 34)	MER20|DNA|hAT-Charlie	2243.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37544066-2	chr1	37543566	37544566	+	728.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-3050.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38537102-2	chr15	38536602	38537602	+	728.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17836.0	NM_018745	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53516481-2	chr4	53515981	53516981	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133891, intron 3 of 15)	intron (NM_133891, intron 3 of 15)	76068.0	NM_133891	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98971417-2	chr11	98970917	98971917	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361954, intron 5 of 7)	MER3|DNA|hAT-Charlie	6545.0	NM_001361954	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4011220-2	chr19	4010720	4011720	+	728.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133666, exon 3 of 10)	exon (NM_133666, exon 3 of 10)	1535.0	NM_133666	17995.0	Mm.29842	NM_133666	ENSMUSG00000037916	Ndufv1	CI-51kD	NADH dehydrogenase (ubiquinone) flavoprotein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86303108-2	chr1	86302608	86303608	+	728.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145222)	promoter-TSS (NM_145222)	-113.0	NM_145222	227327.0	Mm.86467	NM_145222	ENSMUSG00000079445	B3gnt7	C330001H22Rik|beta-3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4270645-2	chr16	4270145	4271145	+	728.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	41416.0	NR_003628	436332.0	Mm.478141	NM_001013830	ENSMUSG00000089645	Gm5766	EG436332	ribosomal protein L7a pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103963583-2	chr11	103963083	103964083	+	728.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3142.0	NM_001304574	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4131108-2	chr19	4130608	4131608	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001078649, intron 6 of 7)	intron (NM_001078649, intron 6 of 7)	5148.0	NM_025889	66990.0	Mm.276255	NM_025889		Tmem134	2410001H17Rik|AI463452	transmembrane protein 134	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135961297-2	chr5	135960806	135961806	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160366, intron 10 of 10)	intron (NM_001160366, intron 10 of 10)	13170.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	0.0	6.5	2.5	0.0	6.0	3.5
Merged-chr11-78059858-2	chr11	78059358	78060358	+	728.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001040403, exon 11 of 11)	3' UTR (NM_001040403, exon 11 of 11)	-13147.0	NR_029556	387162.0		NR_029556	ENSMUSG00000065401	Mir144	Mirn144|mir-144|mmu-mir-144	microRNA 144	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87248115-2	chr17	87247620	87248620	+	728.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	17827.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	35.0	42.0	58.0	55.0	94.5	61.0
Merged-chr11-118223428-2	chr11	118222928	118223928	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	L1MC4a|LINE|L1	-10686.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142457787-2	chr7	142457296	142458296	+	728.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-3016.0	NM_001271510	16985.0	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	12.5	19.5	7.0	4.5	13.5	2.5
Merged-chr16-27354567-2	chr16	27354067	27355067	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198166, intron 4 of 4)	intron (NM_198166, intron 4 of 4)	15672.0	NM_198166	224065.0	Mm.326918	NM_198166	ENSMUSG00000056423	Uts2b	Gm538|U2B|Urp|Uts2d	urotensin 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109258316-2	chr4	109257816	109258816	+	728.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-21959.0	NM_007943	13858.0	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	1.5	11.5	4.0	2.5	6.5	3.5
Merged-chr9-21265894-2	chr9	21265394	21266394	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153583, intron 1 of 9)	MIR|SINE|MIR	609.0	NM_153583	235040.0	Mm.440165	NM_153583	ENSMUSG00000002820	Atg4d	9830134P12Rik|APG4-D|Apg4d|Atg4dl|Autl4	autophagy related 4D, cysteine peptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-10277225-2	chr3	10276725	10277725	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029310, intron 1 of 5)	intron (NM_029310, intron 1 of 5)	-22973.0	NM_001357160	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-23145253-2	chr19	23144753	23145753	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010638, intron 1 of 1)	B1_Mur1|SINE|Alu	4027.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64376688-2	chr13	64376175	64377175	+	728.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6155.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	13.5	3.5	5.0	6.5	9.5	8.0
Merged-chr19-41764521-2	chr19	41764033	41765033	+	728.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	17572.0	NR_040320	100502871.0	Mm.394485	NR_040320		Gm19424	-	predicted gene, 19424	ncRNA	14.0	26.5	28.0	3.5	5.5	2.0
Merged-chr15-78815439-2	chr15	78814939	78815939	+	728.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12397.0	NM_130859	105844.0	Mm.17629	NM_130859	ENSMUSG00000033170	Card10	AI449026|Bimp1|Carma3	caspase recruitment domain family, member 10	protein-coding	9.0	2.5	12.0	4.0	27.5	6.5
Merged-chr3-69632130-2	chr3	69631632	69632632	+	728.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC4|LINE|L1	-33172.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	7.0	20.0	22.0	8.0	14.0	17.5
Merged-chr15-81956456-2	chr15	81955956	81956956	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013872, intron 2 of 7)	intron (NM_013872, intron 2 of 7)	4474.0	NM_001282040	29858.0	Mm.18939	NM_013872	ENSMUSG00000022474	Pmm1	C77612	phosphomannomutase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10356966-2	chr19	10356466	10357466	+	728.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32124.0	NM_018801	54525.0	Mm.182654	NM_018801	ENSMUSG00000024743	Syt7	AI851541|B230112P13Rik	synaptotagmin VII	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66278423-3	chr14	66277918	66278918	+	728.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	2634.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	5.5	6.0	10.0	2.0	6.5	16.0
Merged-chr11-106571768-2	chr11	106571268	106572268	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198292, intron 1 of 11)	intron (NM_198292, intron 1 of 11)	41162.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24407098-4	chr7	24406539	24407539	+	728.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028047, intron 5 of 13)	intron (NM_028047, intron 5 of 13)	7411.0	NM_028047	71997.0	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.5	3.5
Merged-chr9-64139131-2	chr9	64138631	64139631	+	728.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026507, intron 18 of 18)	IAPEY4_LTR|LTR|ERVK	21984.0	NM_145835	235435.0	Mm.436581	NM_145835	ENSMUSG00000032401	Lctl	E130104I05Rik|KLPH	lactase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88253566-3	chr1	88253085	88254085	+	728.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 31 of 41)	intron (NM_001281466, intron 31 of 41)	15823.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53118337-2	chr4	53117837	53118837	+	728.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	41558.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-68994604-2	chr8	68994095	68995095	+	728.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-94141.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	11.0	45.5	10.5	54.0	97.5	28.5
Merged-chr10-75213271-2	chr10	75212771	75213771	+	728.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145826, intron 1 of 18)	intron (NM_001145826, intron 1 of 18)	881.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126896938-2	chr7	126896438	126897438	+	728.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_028389, exon 3 of 6)	exon (NM_028389, exon 3 of 6)	1340.0	NM_026827	68742.0	Mm.248646	NM_026827	ENSMUSG00000060538	Tmem219	1110032O16Rik|2900045G02Rik|IGFBP-3R	transmembrane protein 219	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21989287-2	chr14	21988787	21989787	+	728.333374	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145459, exon 1 of 3)	5' UTR (NM_145459, exon 1 of 3)	314.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66236808-2	chr14	66236308	66237308	+	728.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-22984.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-105428208-3	chr2	105427743	105428743	+	728.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28924.0	NM_009037	19672.0	Mm.4876	NM_009037	ENSMUSG00000005973	Rcn1	Rcn	reticulocalbin 1	protein-coding	0.0	8.0	4.5	1.0	0.5	0.0
Merged-chr5-102640818-3	chr5	102640325	102641325	+	728.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029270, intron 2 of 9)	intron (NM_029270, intron 2 of 9)	-127985.0	NM_001286468	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-65105110-3	chr14	65104583	65105583	+	728.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6977.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-76025728-3	chr3	76025226	76026226	+	728.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48835.0	NM_178673	213262.0	Mm.379337	NM_178673	ENSMUSG00000034098	Fstl5	9130207J01Rik	follistatin-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106317475-3	chr11	106316989	106317989	+	728.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2927.0	NM_001313939	15985.0	Mm.2987	NM_008339	ENSMUSG00000040592	Cd79b	B29|Ig-beta|Igb|Igbeta	CD79B antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35718569-3	chr8	35718089	35719089	+	728.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	107970.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	18.5	11.0	18.0	2.0	0.5	9.0
Merged-chr5-72984233-3	chr5	72983730	72984730	+	728.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22674.0	NM_173403	231290.0	Mm.491387	NM_173403	ENSMUSG00000029219	Slc10a4	E130304D01	solute carrier family 10 (sodium/bile acid cotransporter family), member 4	protein-coding	0.0	0.0	2.5	2.5	2.0	0.0
Merged-chr15-62220172-3	chr15	62219669	62220669	+	728.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003523)	promoter-TSS (NR_003523)	-718.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	1.5	0.5	1.0	0.0	0.5	1.5
Merged-chr12-75563233-3	chr12	75562754	75563754	+	728.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012024, intron 2 of 13)	intron (NM_012024, intron 2 of 13)	32946.0	NM_012024	26932.0	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134589142-3	chr4	134588636	134589636	+	728.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 4 of 11)	intron (NM_207237, intron 4 of 11)	-21285.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107757566-3	chr9	107757073	107758073	+	728.3222049999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153191, intron 5 of 23)	intron (NR_153191, intron 5 of 23)	13429.0	NM_148930	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95264858-5	chr10	95264223	95265223	+	728.299988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	58986.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45621680-4	chr7	45621130	45622130	+	728.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001018013)	promoter-TSS (NM_001018013)	-181.0	NM_001018013	73456.0	Mm.380445	NM_001018013	ENSMUSG00000064158	Izumo1	1700058F15Rik|Izumo	izumo sperm-egg fusion 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126144000-4	chr7	126143485	126144485	+	728.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 8 of 23)	intron (NM_028816, intron 8 of 23)	56516.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67286231-3	chr18	67285732	67286732	+	728.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2991.0	NM_053261	114663.0	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35811721-2	chr17	35811276	35812276	+	728.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-9937.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-5018611-2	chr7	5018111	5019111	+	728.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025324)	TTS (NM_025324)	-1765.0	NM_001290426	319748.0	Mm.86607	NM_001033383	ENSMUSG00000074405	Zfp865	6430526N21Rik|Znf865	zinc finger protein 865	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30177237-2	chr2	30176737	30177737	+	728.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172660, intron 4 of 11)	intron (NM_172660, intron 4 of 11)	1222.0	NM_172660	227695.0	Mm.4449	NM_172660	ENSMUSG00000039660	Spout1	9930028P05|AL033358|CENP-32|D2Wsu81e	SPOUT domain containing methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4086274-2	chr12	4085774	4086774	+	728.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_153082, intron 2 of 6)	intron (NM_153082, intron 2 of 6)	3700.0	NM_153082	217378.0	Mm.271656	NM_153082	ENSMUSG00000020657	Dnajc27	AI639580|C330021A05Rik|Rabj|Rbj	DnaJ heat shock protein family (Hsp40) member C27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27691306-2	chr7	27690806	27691806	+	728.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112731, intron 2 of 5)	B3|SINE|B2	1966.0	NM_001112731	112415.0	Mm.145362	NM_198417	ENSMUSG00000057093	Zfp607b	C030039L03Rik	zinc finger protein 607B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-27022100-4	chr18	27021614	27022614	+	728.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1267957.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5640264-3	chr19	5639733	5640733	+	728.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009045, intron 5 of 10)	intron (NM_009045, intron 5 of 10)	2743.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	8.5	7.0	3.5	7.0	7.0	6.0
Merged-chr11-97657480-3	chr11	97657029	97658029	+	728.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5883.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	8.0	14.0	26.0	5.5	13.5	10.5
Merged-chr9-94993714-3	chr9	94993196	94994196	+	728.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 9 of 15)	intron (NM_177909, intron 9 of 15)	241867.0	NR_106116	102465763.0		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	0.0	0.0	4.0	1.5	4.0	8.5
Merged-chr14-103374960-3	chr14	103374474	103375474	+	728.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28174.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-95098563-4	chr6	95098109	95099109	+	728.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19022.0	NR_153843	102634268.0	Mm.396160	NR_153843		Kbtbd8os	1700010K10Rik	kelch repeat and BTB (POZ) domain containing 8, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr14-55647688-2	chr14	55647188	55648188	+	728.200012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2496.0	NM_001253888	71099.0	Mm.171300	NM_027673	ENSMUSG00000007591	Tssk4	1700020B19Rik|4933424F08Rik|TSK-4|TSSK-4	testis-specific serine kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80927751-5	chr10	80927258	80928258	+	728.200012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2333.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88496566-3	chr5	88496059	88497059	+	728.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017468, intron 8 of 9)	L1M2|LINE|L1	8584.0	NM_017468	13801.0	Mm.8014	NM_017468	ENSMUSG00000029286	Enam	abte	enamelin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5541318-3	chr17	5540818	5541818	+	728.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	48718.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49060268-2	chr11	49059768	49060768	+	728.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145164, intron 1 of 1)	intron (NM_001145164, intron 1 of 1)	3944.0	NM_001145164	100039796.0	Mm.482363	NM_001145164	ENSMUSG00000078921	Tgtp2	TGTP	T cell specific GTPase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124052254-2	chr8	124051730	124052730	+	728.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28757.0	NM_001029876	382038.0	Mm.334891	NM_001029876	ENSMUSG00000031976	Urb2	C77575|mKIAA0133	URB2 ribosome biogenesis 2 homolog (S. cerevisiae)	protein-coding	3.0	9.0	6.0	0.0	4.0	1.0
Merged-chr12-99306222-4	chr12	99305724	99306724	+	728.150024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 3 of 5)	intron (NM_183186, intron 3 of 5)	-143416.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155044721-4	chr2	155044217	155045217	+	728.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015770, intron 1 of 3)	MTD|LTR|ERVL-MaLR	29780.0	NM_016661	269378.0	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	0.0	0.0	0.0	1.5	0.5	0.0
Merged-chr2-168112150-3	chr2	168111654	168112654	+	728.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31150.0	NM_021409	58220.0	Mm.292834	NM_021409	ENSMUSG00000044641	Pard6b	AV025615|Par6b	par-6 family cell polarity regulator beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117114111-3	chr2	117113632	117114632	+	728.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6939.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79043226-2	chr15	79042692	79043692	+	728.083374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001161712)	TTS (NM_001161712)	1307.0	NM_015738	14429.0	Mm.390805	NM_015738	ENSMUSG00000114755	Galr3	Galnr3	galanin receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr19-3724965-2	chr19	3724477	3725477	+	728.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	16566.0	NM_001358257	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124530084-3	chr5	124529556	124530556	+	728.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021430, intron 1 of 6)	intron (NM_021430, intron 1 of 6)	1335.0	NM_021430	75695.0	Mm.41180	NM_021430	ENSMUSG00000029392	Rilpl1	2900002H16Rik|6330559I19Rik|GOSPEL	Rab interacting lysosomal protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-174108575-1	chr2	174108075	174109075	+	728.0	f1_balb.idr	Intergenic	B4A|SINE|B4	-1776.0	NM_213733	228961.0	Mm.295629	NM_213733	ENSMUSG00000039263	Npepl1	BC023239|C85514|mKIAA1974	aminopeptidase-like 1	protein-coding	17.5	0.0	0.0	1.0	0.0	0.0
Merged-chr9-70219263-2	chr9	70218763	70219763	+	728.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 1 of 27)	MTD|LTR|ERVL-MaLR	11913.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-48835077-2	chr9	48834517	48835517	+	728.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033324, intron 1 of 6)	CpG	928.0	NM_001033324	235320.0	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding	0.0	0.0	0.0	3.5	0.0	0.5
Merged-chr18-80227356-1	chr18	80226856	80227856	+	728.0	f1_balb.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	19746.0	NM_001136181	66255.0	Mm.272341	NM_001136181	ENSMUSG00000078963	Hsbp1l1	1810005K13Rik	heat shock factor binding protein 1-like 1	protein-coding	5.0	0.0	2.0	17.5	17.5	11.5
Merged-chr2-137869759-3	chr2	137869260	137870260	+	728.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-386824.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-44014404-2	chr4	44013904	44014904	+	728.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080384, intron 2 of 5)	intron (NM_001080384, intron 2 of 5)	1754.0	NM_001290470	12757.0	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-10412392-2	chr10	10411892	10412892	+	728.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 11 of 36)	intron (NM_001127353, intron 11 of 36)	59922.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-29723649-2	chr4	29723149	29724149	+	728.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	655570.0	NR_151693	102634169.0		NR_151693		Gm11917	-	predicted gene 11917	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141493050-2	chr7	141492550	141493550	+	728.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001142681)	TTS (NM_001142681)	16670.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82994874-2	chr15	82994374	82995374	+	728.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28264.0	NM_028728	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95927007-2	chr3	95926507	95927507	+	728.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2250.0	NM_001253758	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	0.0	0.0	0.0	1.5	0.0	0.0
Merged-chr8-71759015-1	chr8	71758515	71759515	+	728.0	f1_c57bl6.idr	Intergenic	Intergenic	-33334.0	NM_028715	74015.0	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	8.0	2.5	6.5	0.0	9.5	15.5
Merged-chr11-79867984-2	chr11	79867484	79868484	+	728.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94403.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	0.0	0.0	4.0	0.0	2.5	0.5
Merged-chr8-70344611-1	chr8	70344111	70345111	+	728.0	f1_balb.idr	intron (NM_030680, intron 1 of 23)	intron (NM_030680, intron 1 of 23)	8668.0	NM_030680	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	1.5	7.5	0.5	0.0	4.5	0.5
Merged-chr11-70907035-2	chr11	70906535	70907535	+	728.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019400, intron 7 of 17)	intron (NM_019400, intron 7 of 17)	62274.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84149035-1	chr17	84148535	84149535	+	728.0	f0_balb.idr	Intergenic	Intergenic	38912.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39229822-2	chr6	39229322	39230322	+	728.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23049.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88034554-1	chr4	88034054	88035054	+	728.0	f0_balb.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-1147.0	NM_027326	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103023183-2	chr3	103022664	103023664	+	728.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310693, intron 1 of 17)	intron (NM_001310693, intron 1 of 17)	2618.0	NM_144901	229663.0	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	15.0	27.0	13.0	15.0	27.5	12.0
Merged-chr1-180394127-2	chr1	180393627	180394627	+	728.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-63578.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47594856-2	chr17	47594356	47595356	+	728.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081636, exon 4 of 7)	exon (NM_001081636, exon 4 of 7)	1389.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-130037767-2	chr7	130037267	130038267	+	728.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75602.0	NR_046077	100043150.0	Mm.334264	NR_046077	ENSMUSG00000108504	Gm4265	-	predicted gene 4265	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34567631-2	chr19	34567131	34568131	+	728.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355262, intron 1 of 2)	ORR1F|LTR|ERVL-MaLR	-15898.0	NM_010501	15959.0	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69360006-2	chr12	69359506	69360506	+	728.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-2830.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	1.0	11.0	0.0	0.5	0.0	0.0
Merged-chr5-150841359-3	chr5	150840863	150841863	+	728.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-111244.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17680370-2	chr6	17679870	17680870	+	728.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-13624.0	NM_001289626	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145352164-1	chr6	145351664	145352664	+	728.0	f1_c57bl6.idr	Intergenic	Intergenic	-35461.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	4.0	0.0	5.0	5.5	20.0	8.0
Merged-chr16-91409526-2	chr16	91409026	91410026	+	728.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008349, intron 2 of 6)	intron (NM_008349, intron 2 of 6)	3291.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24638929-3	chr10	24638403	24639403	+	728.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008813, exon 25 of 25)	3' UTR (NM_008813, exon 25 of 25)	43461.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119331167-2	chr13	119330667	119331667	+	728.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	77844.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60827535-2	chr10	60827035	60828035	+	728.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029770, intron 1 of 16)	intron (NM_029770, intron 1 of 16)	4046.0	NM_029770	107449.0	Mm.290433	NM_029770	ENSMUSG00000020099	Unc5b	6330415E02Rik|A630020F16|D10Bwg0792e|Unc5h2	unc-5 netrin receptor B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124377723-2	chr6	124377223	124378223	+	728.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13237.0	NR_131162	72268.0	Mm.420740	NR_131162		1700027F06Rik	-	RIKEN cDNA 1700027F06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180265665-1	chr1	180265165	180266165	+	728.0	f1_c57bl6.idr	Intergenic	Intergenic	-9365.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0.0	0.0	0.0	10.0	16.5	9.5
Merged-chr8-26612323-3	chr8	26611834	26612834	+	728.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	212089.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	1.0	5.0	0.5	2.5	0.0	4.5
Merged-chr5-60286097-1	chr5	60285597	60286597	+	728.0	f1_balb.idr	Intergenic	Lx2A|LINE|L1	-300095.0	NR_040682	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	0.5	4.0	1.0	1.0	0.0	0.0
Merged-chr1-80901295-2	chr1	80900795	80901795	+	728.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-142742.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85591239-2	chr12	85590739	85591739	+	728.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-7866.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88689594-3	chr5	88689023	88690023	+	728.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-13352.0	NM_178700	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125451695-1	chr6	125451195	125452195	+	728.0	f1_balb.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	43065.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	3.0	1.5	2.0	0.0	4.0	0.5
Merged-chr7-13056954-2	chr7	13056454	13057454	+	728.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-2190.0	NM_145819	109889.0	Mm.10103	NM_145819	ENSMUSG00000030380	Mzf1	Mzf-2|Mzf2|Zfp121|Zfp98|Znf42	myeloid zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94573129-2	chr16	94572629	94573629	+	728.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	2222.0	NM_001113389	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-100410212-2	chr3	100409712	100410712	+	728.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-16193.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-18786887-1	chr13	18786387	18787387	+	728.0	f1_c57bl6.idr	intron (NM_172120, intron 5 of 28)	intron (NM_172120, intron 5 of 28)	69595.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	0.0	8.5	5.5	0.0	0.0	3.0
Merged-chr4-116422352-2	chr4	116421852	116422852	+	728.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042743, intron 3 of 29)	MERV1_LTR|LTR|ERV1	41829.0	NM_001042743	17776.0	Mm.9287	NM_008641	ENSMUSG00000003810	Mast2	MAST205|Mtssk	microtubule associated serine/threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141722543-1	chr4	141722043	141723043	+	728.0	f1_c57bl6.idr	intron (NM_001017966, intron 1 of 9)	intron (NM_001017966, intron 1 of 9)	876.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	115.5	279.0	188.5	66.5	215.0	125.0
Merged-chr8-40497876-1	chr8	40497376	40498376	+	728.0	f0_balb.idr	intron (NR_155265, intron 5 of 6)	intron (NR_155265, intron 5 of 6)	12603.0	NM_001361938	18983.0	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	12.0	13.5	13.0	17.5	25.5	15.5
Merged-chr11-121041402-4	chr11	121040887	121041887	+	727.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1909.0	NM_009854	12516.0	Mm.4100	NM_009854	ENSMUSG00000025163	Cd7	-	CD7 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-50872852-2	chr10	50872352	50873352	+	727.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22799.0	NM_011376	20464.0	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded family bHLH transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142699807-3	chr3	142699350	142700350	+	727.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1198.0	NM_173763	229905.0	Mm.289643	NM_173763	ENSMUSG00000040213	Kyat3	Ccbl2|KATIII|Kat3	kynurenine aminotransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115268085-3	chr6	115267595	115268595	+	727.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111015, intron 10 of 12)	intron (NM_001111015, intron 10 of 12)	-15890.0	NM_001356406	110595.0	Mm.255607	NM_080639	ENSMUSG00000030317	Timp4	Timp-4	tissue inhibitor of metalloproteinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75684337-2	chr2	75683837	75684837	+	727.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_010902, intron 1 of 4)	intron (NM_010902, intron 1 of 4)	20326.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100313771-2	chr11	100313271	100314271	+	727.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6178.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-45630544-4	chr16	45630046	45631046	+	727.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145389, intron 4 of 5)	intron (NM_145389, intron 4 of 5)	20106.0	NM_001159297	14525.0	Mm.4799	NM_008099	ENSMUSG00000022659	Gcsam	Gcet|Gcet2|M17|M17-L	germinal center associated, signaling and motility	protein-coding	2.5	0.0	1.0	0.0	0.0	2.5
Merged-chr5-101926172-2	chr5	101925672	101926672	+	727.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 18 of 66)	intron (NM_172882, intron 18 of 66)	143749.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36229217-2	chr17	36228717	36229717	+	727.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28629.0	NM_026308	67676.0	Mm.27131	NM_026308	ENSMUSG00000024446	Rpp21	0610037N01Rik	ribonuclease P 21 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61944352-2	chr11	61943852	61944852	+	727.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	-12411.0	NM_001281818	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-38571330-3	chr3	38570826	38571826	+	727.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-86510.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-105483540-3	chr14	105483043	105484043	+	727.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15245.0	NR_045921	74864.0	Mm.159344	NR_045921	ENSMUSG00000022116	4930449E01Rik	-	RIKEN cDNA 4930449E01 gene	ncRNA	3.0	3.0	2.0	3.0	3.0	2.0
Merged-chr18-67289864-6	chr18	67289367	67290367	+	727.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053261, intron 1 of 7)	intron (NM_053261, intron 1 of 7)	644.0	NM_053261	114663.0	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-74693248-3	chr7	74692715	74693715	+	727.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR50|LTR|ERVL	-138435.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	12.5	21.0	10.0	11.5	14.5	14.0
Merged-chr6-52064574-3	chr6	52064074	52065074	+	727.783325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38375.0	NR_110440	102635415.0	Mm.333063	NR_110440	ENSMUSG00000085412	Halr1	Gm15055|Haunt|Linchoxa1|linc-Evx1|linc-Hoxa1|linc1547	Hoxa adjacent long noncoding RNA 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73534903-3	chr2	73534406	73535406	+	727.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5419.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119277149-1	chr2	119276649	119277649	+	727.75	f0_balb.idr	Intergenic	Intergenic	-5923.0	NM_145530	228543.0	Mm.120274	NM_145530	ENSMUSG00000034226	Rhov	A030005A06Rik|Arhv	ras homolog family member V	protein-coding	5.0	2.0	3.0	2.0	19.5	11.0
Merged-chr3-31092069-2	chr3	31091569	31092569	+	727.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2989.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27474908-2	chr2	27474408	27475408	+	727.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113573, intron 1 of 11)	intron (NM_001113573, intron 1 of 11)	490.0	NM_023336	67382.0	Mm.28721	NM_023336	ENSMUSG00000026918	Brd3	2410084F24Rik|AW060456|Fsrg2|ORFX|RINGL3	bromodomain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-24504635-2	chr9	24504135	24505135	+	727.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-1495.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167495425-2	chr2	167494925	167495925	+	727.727295	f1_balb.idr|f1_c57bl6.idr	intron (NM_030743, intron 1 of 7)	intron (NM_030743, intron 1 of 7)	-2551.0	NM_001356523	263876.0	Mm.34342	NM_170756	ENSMUSG00000047030	Spata2	AI504642|mKIAA0757	spermatogenesis associated 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-99099938-2	chr13	99099481	99100481	+	727.708374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12060.0	NR_045495	69603.0	Mm.390632	NR_045495	ENSMUSG00000100410	2310020H05Rik	-	RIKEN cDNA 2310020H05 gene	ncRNA	3.0	10.5	1.0	3.0	2.0	1.0
Merged-chr16-38403250-2	chr16	38402750	38403750	+	727.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_134102, intron 8 of 10)	RMER4B|LTR|ERVK	29895.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-20973255-2	chr5	20972755	20973755	+	727.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21433.0	NM_001080977	242860.0	Mm.254286	NM_001080977	ENSMUSG00000039968	Rsbn1l	8430412F05Rik|AI447441|C330002G24Rik	round spermatid basic protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98294282-3	chr7	98293769	98294769	+	727.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360615, intron 1 of 10)	L1ME2z|LINE|L1	15273.0	NM_001360616	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8342067-3	chr15	8341539	8342539	+	727.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201232, intron 11 of 45)	intron (NM_201232, intron 11 of 45)	102424.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103112328-2	chr11	103111828	103112828	+	727.666687	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025988)	TTS (NM_025988)	-3997.0	NM_138753	192231.0	Mm.8763	NM_138753	ENSMUSG00000048878	Hexim1	7330426E13Rik|CLP-1|Clp1|HIS1	hexamethylene bis-acetamide inducible 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-137566056-3	chr6	137565521	137566521	+	727.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271588, intron 1 of 20)	intron (NM_001271588, intron 1 of 20)	4988.0	NM_001271595	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65501558-1	chr18	65501058	65502058	+	727.666687	f0_balb.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	70561.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	1.5	5.0	14.0	21.5	62.0	72.5
Merged-chr9-32487588-3	chr9	32487114	32488114	+	727.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	53838.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-63134772-2	chr11	63134272	63135272	+	727.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302255, intron 3 of 4)	intron (NM_001302255, intron 3 of 4)	1969.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100397992-4	chr12	100397450	100398450	+	727.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 9 of 19)	intron (NM_001033213, intron 9 of 19)	121341.0	NR_045741	100038713.0	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143073239-4	chr7	143072721	143073721	+	727.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020277, exon 23 of 25)	exon (NM_020277, exon 23 of 25)	3853.0	NM_001115085	56844.0	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	0.0	3.0	0.0	0.0	1.5	0.0
Merged-chr2-33227494-4	chr2	33226991	33227991	+	727.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011923, intron 1 of 4)	L2b|LINE|L2	11530.0	NM_011923	26360.0	Mm.208919	NM_011923	ENSMUSG00000004105	Angptl2	AI593246|AW260363|Arp2	angiopoietin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13594000-2	chr8	13593500	13594500	+	727.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 7 of 23)	intron (NM_009025, intron 7 of 23)	-31539.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59515065-3	chr11	59514567	59515567	+	727.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8427.0	NM_172941	268417.0	Mm.239793	NM_172941	ENSMUSG00000020472	Zkscan17	Nizp1|Zfp496|Znf496	zinc finger with KRAB and SCAN domains 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-111065273-2	chr11	111064773	111065773	+	727.583313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008425)	promoter-TSS (NM_008425)	-891.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	24.5	52.0	22.0	15.0	19.5	19.0
Merged-chr19-34231751-3	chr19	34231226	34232226	+	727.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360720)	promoter-TSS (NM_001360720)	-899.0	NM_001360720	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	2.5	7.0	5.5	5.0	19.0	11.5
Merged-chr12-104952565-2	chr12	104952065	104953065	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042699, intron 12 of 18)	intron (NM_001042699, intron 12 of 18)	46112.0	NM_001042699	212073.0	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	KASH3|nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-36236115-2	chr2	36235615	36236615	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 2 of 10)	intron (NM_008969, intron 2 of 10)	5689.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32895834-1	chr19	32895334	32896334	+	727.5	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	138257.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	7.5	9.5	10.5	10.0	10.5	2.0
Merged-chr14-20684775-2	chr14	20684275	20685275	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172596, intron 6 of 22)	intron (NM_172596, intron 6 of 22)	-5860.0	NR_105911	102465571.0		NR_105911	ENSMUSG00000098602	Mir6946	Gm27799|mmu-mir-6946	microRNA 6946	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117797987-2	chr11	117797487	117798487	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029964, intron 1 of 5)	intron (NM_029964, intron 1 of 5)	327.0	NM_029964	77727.0	Mm.159981	NM_029964	ENSMUSG00000025573	6030468B19Rik	Il-40	RIKEN cDNA 6030468B19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43667795-2	chr19	43667343	43668343	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145156, intron 1 of 3)	B3A|SINE|B2	7038.0	NM_145156	246696.0	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	0.0	1.0	1.5	2.5	0.0	1.0
Merged-chr6-41825694-2	chr6	41825194	41826194	+	727.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21855.0	NM_008843	18716.0	Mm.214755	NM_008843	ENSMUSG00000058499	Pip	GCDFP-15|GP17|SMGP	prolactin induced protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107711763-2	chr9	107711264	107712264	+	727.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1289.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	0.0	0.0	0.0	0.0	3.0	0.0
Merged-chr11-82005958-2	chr11	82005458	82006458	+	727.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29619.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113780650-2	chr5	113780150	113781150	+	727.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CACAG)n|Simple_repeat|Simple_repeat	7838.0	NM_025526	66383.0	Mm.29497	NM_025526	ENSMUSG00000025825	Iscu	2310020H20Rik|AA407971|Nifu|Nifun	iron-sulfur cluster assembly enzyme	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57330093-2	chr17	57329593	57330593	+	727.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011691)	TTS (NM_011691)	-28593.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-147606901-2	chr6	147606395	147607395	+	727.5	f0_balb.idr|f1_balb.idr	exon (NM_025911, exon 12 of 13)	exon (NM_025911, exon 12 of 13)	-83346.0	NR_033636	100039727.0	Mm.396220	NR_033636	ENSMUSG00000085077	1700049E15Rik	Gm15761	RIKEN cDNA 1700049E15 gene	ncRNA	5.5	3.0	3.5	4.0	0.0	7.0
Merged-chr11-84871929-2	chr11	84871429	84872429	+	727.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_131201)	TTS (NR_131201)	1006.0	NR_131197	102635561.0	Mm.341797	NR_131197		Ggnbp2os	-	gametogenetin binding protein 2, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134965589-2	chr5	134965089	134966089	+	727.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18655.0	NM_009903	12740.0	Mm.7339	NM_009903	ENSMUSG00000047501	Cldn4	Cep-r|Cpetr|Cpetr1	claudin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86838768-2	chr12	86838268	86839268	+	727.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46046.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43658152-2	chr7	43657652	43658652	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031181, intron 3 of 6)	ID_B1|SINE|B4	2009.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-7860586-2	chr14	7860086	7861086	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081427, intron 1 of 45)	intron (NM_001081427, intron 1 of 45)	42629.0	NM_134080	286940.0	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36734467-3	chr18	36733966	36734966	+	727.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028036)	promoter-TSS (NM_028036)	-604.0	NM_028036	71983.0	Mm.135188	NM_028036	ENSMUSG00000006850	Tmco6	2410015B03Rik	transmembrane and coiled-coil domains 6	protein-coding	9.5	17.0	17.5	20.5	32.0	20.0
Merged-chr8-13156587-2	chr8	13156087	13157087	+	727.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2574.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43508295-2	chr4	43507795	43508795	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013377, intron 1 of 11)	intron (NM_001013377, intron 1 of 11)	452.0	NM_001013377	230098.0	Mm.331567	NM_001013377	ENSMUSG00000051517	Arhgef39	E130306D19Rik	Rho guanine nucleotide exchange factor (GEF) 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11617757-2	chr16	11617257	11618257	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 15 of 20)	intron (NM_028964, intron 15 of 20)	-161945.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58711144-2	chr1	58710644	58711644	+	727.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289704)	promoter-TSS (NM_001289704)	-347.0	NR_149257	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167416422-2	chr2	167415922	167416922	+	727.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5288.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66118395-2	chr7	66117895	66118895	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081163, intron 1 of 2)	intron (NM_001081163, intron 1 of 2)	8880.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-82947148-2	chr13	82946658	82947658	+	727.5	f0_balb.idr|f0_c57.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-248825.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	8.0	10.5	7.5	3.5	13.0	5.5
Merged-chr10-86973153-2	chr10	86972653	86973653	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 5 of 68)	intron (NM_138673, intron 5 of 68)	34789.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122210252-2	chr7	122209752	122210752	+	727.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9244.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3909300-2	chr19	3908800	3909800	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271443, intron 5 of 6)	intron (NM_001271443, intron 5 of 6)	-2167.0	NM_001136091	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36741389-2	chr18	36740844	36741844	+	727.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010885)	TTS (NM_010885)	3243.0	NM_010885	17991.0	Mm.29867	NM_010885	ENSMUSG00000014294	Ndufa2	AV000592|B8|C1-B8|CI-B8	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2	protein-coding	0.0	0.0	1.0	0.0	0.0	0.5
Merged-chr17-45471943-2	chr17	45471443	45472443	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357832, intron 1 of 6)	intron (NM_001357832, intron 1 of 6)	2995.0	NM_027649	71020.0	Mm.44257	NM_027649	ENSMUSG00000023935	Spats1	1700011H05Rik|4933400B06Rik|Ddip|Srsp1	spermatogenesis associated, serine-rich 1	protein-coding	5.5	0.0	1.5	0.0	1.5	0.0
Merged-chr19-29827684-2	chr19	29827184	29828184	+	727.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1N2|LTR|ERVL-MaLR	-14710.0	NM_177721	240614.0	Mm.125503	NM_177721	ENSMUSG00000074909	Ranbp6	C630001B19	RAN binding protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101947813-2	chr5	101947313	101948313	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 10 of 66)	intron (NM_172882, intron 10 of 66)	122108.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	1.0	8.0	3.0	0.0	3.5	0.5
Merged-chr18-67723974-2	chr18	67723474	67724474	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008977, intron 1 of 9)	CpG	647.0	NM_001127177	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	90.0	327.0	203.5	133.0	313.0	219.5
Merged-chr8-22869524-2	chr8	22869024	22870024	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081149, intron 3 of 17)	B3|SINE|B2	9985.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11434876-2	chr2	11434376	11435376	+	727.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36376.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-60284903-2	chr14	60284403	60285403	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144843, intron 4 of 13)	intron (NM_144843, intron 4 of 13)	19698.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	21.0	47.0	20.5	8.0	59.5	10.0
Merged-chr8-122907327-2	chr8	122906882	122907882	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_037865, intron 4 of 13)	PB1D11|SINE|Alu	59008.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	4.5	17.5	9.0	3.0	9.5	6.0
Merged-chr8-75071217-2	chr8	75070717	75071717	+	727.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22401.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.0	0.5	9.0	4.5	0.0	2.5
Merged-chr8-108997550-2	chr8	108997050	108998050	+	727.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60690.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119754850-3	chr13	119754375	119755375	+	727.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175538, intron 1 of 3)	intron (NM_175538, intron 1 of 3)	1007.0	NM_175538	245269.0	Mm.403943	NM_175538	ENSMUSG00000095930	Nim1k	E130304F04Rik|Nim1	NIM1 serine/threonine protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55477588-2	chr13	55477088	55478088	+	727.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105909)	TTS (NR_105909)	188.0	NR_105909	102465569.0		NR_105909	ENSMUSG00000098341	Mir6944	Gm27710|mmu-mir-6944	microRNA 6944	ncRNA	0.0	5.5	0.0	1.5	0.0	0.0
Merged-chr6-120912027-2	chr6	120911572	120912572	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007544, intron 1 of 5)	intron (NM_007544, intron 1 of 5)	4752.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	4.5	1.0	1.0	3.0	0.0	1.0
Merged-chr13-107905509-2	chr13	107905009	107906009	+	727.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15445.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	1.5	4.0	4.5	0.0	18.5	3.0
Merged-chr10-110585167-2	chr10	110584667	110585667	+	727.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-15483.0	NR_028438	109335.0	Mm.367727	NR_028438	ENSMUSG00000112398	9230102K24Rik	-	RIKEN cDNA 9230102K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75684424-2	chr7	75683924	75684924	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 12 of 36)	intron (NM_029332, intron 12 of 36)	-163914.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	2.0	7.0	2.5	0.0	1.5	6.0
Merged-chr8-126929011-2	chr8	126928511	126929511	+	727.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	16910.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-84068216-2	chr6	84067716	84068716	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 10 of 54)	intron (NM_001077694, intron 10 of 54)	48830.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46344909-2	chr19	46344409	46345409	+	727.483337	f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_B|LTR|ERVK	2147.0	NR_030468	751550.0		NR_030468	ENSMUSG00000070127	Mir146b	Mirn146b|mir-146b	microRNA 146b	ncRNA	1.0	0.0	1.0	0.5	3.0	2.0
Merged-chr8-80808332-3	chr8	80807829	80808829	+	727.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021356, intron 1 of 9)	intron (NM_021356, intron 1 of 9)	-68870.0	NM_053124	93762.0	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92308890-3	chr5	92308424	92309424	+	727.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172713, intron 1 of 21)	B3|SINE|B2	1100.0	NM_172713	231452.0	Mm.86564	NM_172713	ENSMUSG00000029415	Sdad1	4931421J16|AA591032|AW538460	SDA1 domain containing 1	protein-coding	4.5	17.5	5.0	21.0	16.0	24.0
Merged-chr2-116999022-3	chr2	116998525	116999525	+	727.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98873.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.0	0.0	1.0	1.5	0.0	0.0
Merged-chr12-16920735-3	chr12	16920234	16921234	+	727.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009072, intron 1 of 32)	L2a|LINE|L2	25756.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	18.5	12.5	2.5	0.0	7.0	5.0
Merged-chr12-85452969-2	chr12	85452469	85453469	+	727.416687	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-20921.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-77482114-3	chr8	77481600	77482600	+	727.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 1 of 22)	intron (NM_030113, intron 1 of 22)	-34956.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91095113-3	chr1	91094614	91095614	+	727.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 10 of 22)	intron (NM_008515, intron 10 of 22)	41670.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84595652-2	chr2	84595152	84596152	+	727.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53828.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130173370-2	chr5	130172870	130173870	+	727.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359233, intron 1 of 7)	intron (NM_001359233, intron 1 of 7)	1551.0	NM_001359233	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-76690872-2	chr13	76690372	76691372	+	727.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_030174, intron 3 of 20)	RMER19C|LTR|ERVK	305911.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	0.0	2.0	3.0	0.0	2.0	8.0
Merged-chr17-56111951-3	chr17	56111453	56112453	+	727.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025874, exon 9 of 9)	3' UTR (NM_025874, exon 9 of 9)	-2151.0	NM_020568	57435.0	Mm.12966	NM_020568	ENSMUSG00000002831	Plin4	S3-12|mKIAA1881	perilipin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129066489-3	chr4	129065977	129066977	+	727.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 1 of 8)	L1_Mus2|LINE|L1	8206.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119360053-3	chr2	119359541	119360541	+	727.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8799.0	NM_026929	69065.0	Mm.35083	NM_026929	ENSMUSG00000027313	Chac1	1810008K03Rik	ChaC, cation transport regulator 1	protein-coding	7.5	20.0	9.5	33.0	118.0	71.5
Merged-chr14-68580908-3	chr14	68580429	68581429	+	727.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021475, intron 1 of 13)	intron (NM_021475, intron 1 of 13)	1143.0	NM_021475	58860.0	Mm.36742	NM_021475	ENSMUSG00000022057	Adamdec1	2210414L24Rik|AI574231|Dcsn	ADAM-like, decysin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-46924637-3	chr14	46924147	46925147	+	727.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	30281.0	NR_105813	102465206.0		NR_105813	ENSMUSG00000099036	Mir378c	Gm27930|mmu-mir-378c	microRNA 378c	ncRNA	17.0	20.5	23.5	19.0	18.0	18.0
Merged-chr7-30309476-3	chr7	30308973	30309973	+	727.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198027, intron 1 of 6)	intron (NM_198027, intron 1 of 6)	720.0	NM_198027	233065.0	Mm.276277	NM_198027	ENSMUSG00000042831	Alkbh6	AI839550|Abh6|C130099A02	alkB homolog 6	protein-coding	8.5	23.5	28.5	16.0	36.0	20.0
Merged-chr17-29499425-3	chr17	29498942	29499942	+	727.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8397.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45039832-3	chr2	45039226	45040226	+	727.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	C-rich|Low_complexity|Low_complexity	-16549.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136138245-2	chr5	136137745	136138745	+	727.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028070)	promoter-TSS (NM_028070)	-536.0	NM_028070	72041.0	Mm.294725	NM_028070	ENSMUSG00000039754	Alkbh4	2010004B12Rik|Abj4	alkB homolog 4, lysine demethylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-77526496-3	chr14	77526004	77527004	+	727.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253759, intron 7 of 19)	Lx6|LINE|L1	-19636.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	17.5	10.5	5.5	10.0	5.5	4.5
Merged-chr2-5711705-3	chr2	5711221	5712221	+	727.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	B4A|SINE|B4	3041.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	10.0	11.5	9.5	10.5	12.0	14.5
Merged-chr8-75092729-4	chr8	75092115	75093115	+	727.212524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-1003.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	14.0	53.0	31.5	6.5	22.5	26.5
Merged-chr5-99219332-3	chr5	99218882	99219882	+	727.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 13 of 13)	intron (NM_181318, intron 13 of 13)	33545.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61654397-2	chr14	61653897	61654897	+	727.166687	f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	B3A|SINE|B2	-22287.0	NR_029733	387174.0		NR_029733	ENSMUSG00000093007	Mir15a	Mirn15a|mir-15a|mmu-mir-15a	microRNA 15a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99330232-3	chr15	99329735	99330735	+	727.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310622, intron 5 of 25)	intron (NM_001310622, intron 5 of 25)	26951.0	NM_001348256	54614.0	Mm.358668	NM_018786	ENSMUSG00000023007	Prpf40b	2610317D23Rik|Hypc	pre-mRNA processing factor 40B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84221642-2	chr15	84221142	84222142	+	727.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10401.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	2.0	5.5	1.0	1.5	2.5	3.0
Merged-chr13-8871789-3	chr13	8871294	8872294	+	727.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172445)	promoter-TSS (NM_172445)	-58.0	NM_001039388	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-45819703-3	chr1	45819255	45820255	+	727.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028599, intron 17 of 20)	intron (NM_028599, intron 17 of 20)	24589.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40225425-2	chr12	40224925	40225925	+	727.166687	f1_balb.idr|f1_c57bl6.idr	intron (NR_045157, intron 2 of 2)	intron (NR_045157, intron 2 of 2)	2061.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88579986-2	chr3	88579487	88580487	+	727.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_001356316, exon 2 of 6)	exon (NM_001356316, exon 2 of 6)	379.0	NM_025448	66256.0	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|SSR-beta|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	30.5	46.0	60.0	29.5	40.5	63.5
Merged-chr2-181919159-2	chr2	181918641	181919641	+	727.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	54781.0	NM_025901	67005.0	Mm.271986	NM_025901	ENSMUSG00000038628	Polr3k	12.3kDa|1500004O14Rik|AI196849|AU014893|C11|RPC10|RPC11	polymerase (RNA) III (DNA directed) polypeptide K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44511282-2	chr9	44510782	44511782	+	727.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007551)	TTS (NM_007551)	12146.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71255315-2	chr17	71254815	71255815	+	727.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 6 of 7)	intron (NM_001357337, intron 6 of 7)	50661.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	7.0	3.0	2.5	2.0	8.0	5.5
Merged-chr14-120741074-2	chr14	120740574	120741574	+	727.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-170120.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-94290730-2	chr2	94290230	94291230	+	727.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29331.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-12268283-3	chr12	12267766	12268766	+	727.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	6127.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-111674843-3	chr14	111674357	111675357	+	727.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198865)	promoter-TSS (NM_198865)	-258.0	NM_198865	75409.0	Mm.235097	NM_029273	ENSMUSG00000033214	Slitrk5	2610019D03Rik	SLIT and NTRK-like family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171055354-2	chr1	171054854	171055854	+	727.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356511, intron 3 of 4)	intron (NM_001356511, intron 3 of 4)	4040.0	NM_001356511	14131.0	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	2.0	7.0	6.5	6.5	11.5	7.0
Merged-chr6-31073483-3	chr6	31073090	31074090	+	727.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10497.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-51933766-3	chr2	51933215	51934215	+	727.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355607)	promoter-TSS (NM_001355607)	-380.0	NM_001355607	71684.0	Mm.28309	NM_030243	ENSMUSG00000036249	Rbm43	0610033I05Rik	RNA binding motif protein 43	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106305535-3	chr11	106305037	106306037	+	727.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3641.0	NM_008117	14599.0	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38712986-3	chr6	38712486	38713486	+	727.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 12 of 14)	ORR1D2|LTR|ERVL-MaLR	49917.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-38115010-3	chr3	38114534	38115534	+	727.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93085.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69121108-2	chr11	69120608	69121608	+	727.041626	f1_balb.idr|f1_c57bl6.idr	intron (NM_033041, intron 1 of 3)	intron (NM_033041, intron 1 of 3)	655.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	9.5	4.5	5.5	2.5	1.0	5.5
Merged-chr3-107217039-2	chr3	107216539	107217539	+	727.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111143, intron 4 of 8)	intron (NM_001111143, intron 4 of 8)	4693.0	NM_001111143	229697.0	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	9.5	7.0	2.5	10.5	13.5	5.0
Merged-chr8-80747704-2	chr8	80747204	80748204	+	727.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B3|LTR|ERVK	-8245.0	NM_053124	93762.0	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73613416-2	chr7	73612916	73613916	+	727.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-55021.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-61964406-2	chr17	61963906	61964906	+	727.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	916911.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116611412-2	chr11	116610912	116611912	+	727.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	CT-rich|Low_complexity|Low_complexity	12840.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-88910438-2	chr16	88909938	88910938	+	727.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-13989.0	NM_010676	16704.0	Mm.3503	NM_010676	ENSMUSG00000051802	Krtap19-5	Krtap8-2	keratin associated protein 19-5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100666841-1	chr12	100666341	100667341	+	727.0	f1_balb.idr	intron (NM_153587, intron 2 of 17)	LTR16A1|LTR|ERVL	58279.0	NM_001330702	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	0.0	3.5	1.5	3.0	1.0	2.5
Merged-chr2-66180498-3	chr2	66179984	66180984	+	727.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55691.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96485686-3	chr15	96485169	96486169	+	727.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24826.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130310457-2	chr4	130309957	130310957	+	727.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010174, intron 1 of 3)	intron (NM_010174, intron 1 of 3)	1679.0	NM_010174	14077.0	Mm.388886	NM_010174	ENSMUSG00000028773	Fabp3	Fabph-1|Fabph-4|Fabph1|Fabph4|H-FABP|Mdgi	fatty acid binding protein 3, muscle and heart	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-37435626-2	chr6	37435126	37436126	+	727.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	6522.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128544345-2	chr10	128543845	128544845	+	727.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_134003, exon 3 of 3)	exon (NM_134003, exon 3 of 3)	3399.0	NM_134003	103284.0	Mm.68289	NM_134003	ENSMUSG00000039810	Zc3h10	AI790326	zinc finger CCCH type containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-78726032-1	chr1	78725532	78726532	+	727.0	f1_balb.idr	Intergenic	Intergenic	67592.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-150759715-1	chr1	150759215	150760215	+	727.0	f0_balb.idr	intron (NM_001024720, intron 15 of 106)	intron (NM_001024720, intron 15 of 106)	233720.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95935732-2	chr16	95935232	95936232	+	727.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6655.0	NR_040484	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-54562842-2	chr9	54562342	54563342	+	727.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2763.0	NM_019686	56506.0	Mm.42192	NM_019686	ENSMUSG00000037493	Cib2	2810434I23Rik|AI449053	calcium and integrin binding family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99652462-3	chr15	99651970	99652970	+	727.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012025)	promoter-TSS (NM_012025)	-814.0	NM_001253809	26934.0	Mm.273804	NM_012025	ENSMUSG00000023015	Racgap1	AI227039|AI327394|Band25|GTPase|MgcRacGAP|gtl11|mKIAA1478	Rac GTPase-activating protein 1	protein-coding	2.0	17.0	7.0	4.5	18.5	5.5
Merged-chr2-73429303-2	chr2	73428803	73429803	+	727.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153138)	TTS (NM_153138)	24586.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156614361-1	chr1	156613861	156614861	+	727.0	f0_balb.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	55574.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	12.0	24.5	13.5	10.0	23.5	12.0
Merged-chr8-13651562-2	chr8	13651062	13652062	+	727.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	26025.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-9834126-2	chr17	9833626	9834626	+	727.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A|LTR|ERVK	-58260.0	NR_045433	71092.0	Mm.243827	NR_045433		4930452A19Rik	4933424P20Rik	RIKEN cDNA 4930452A19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91194273-2	chr2	91193773	91194773	+	727.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355279, intron 1 of 9)	MIRb|SINE|MIR	762.0	NM_013839	22259.0	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	18.0	17.5	23.0	1.5	17.5	17.5
Merged-chr4-133062226-1	chr4	133061726	133062726	+	727.0	f1_balb.idr	exon (NM_146155, exon 6 of 7)	exon (NM_146155, exon 6 of 7)	50720.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	0.0	3.5	0.5	2.5	0.0	0.0
Merged-chr17-23741555-2	chr17	23741033	23742033	+	727.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028416, exon 10 of 10)	3' UTR (NM_028416, exon 10 of 10)	-1203.0	NM_023824	76498.0	Mm.491253	NM_023824	ENSMUSG00000023909	Paqr4	1500004C10Rik	progestin and adipoQ receptor family member IV	protein-coding	0.0	3.5	2.5	0.0	2.5	2.5
Merged-chr9-118685664-2	chr9	118685164	118686164	+	727.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 13 of 27)	intron (NM_133721, intron 13 of 27)	-26028.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31254774-2	chr17	31254290	31255290	+	727.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025290)	TTS (NM_025290)	22566.0	NM_025290	22092.0	Mm.12743	NM_025290	ENSMUSG00000024033	Rsph1	MCA|Tsga2	radial spoke head 1 homolog (Chlamydomonas)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117946671-1	chr5	117946171	117947171	+	727.0	f1_balb.idr	intron (NM_008712, intron 24 of 27)	(TAGA)n|Simple_repeat|Simple_repeat	-30099.0	NM_145564	231670.0	Mm.21912	NM_145564	ENSMUSG00000032898	Fbxo21	2810425J22Rik|AU016673	F-box protein 21	protein-coding	1.5	4.0	7.0	0.0	0.0	0.0
Merged-chr7-43347911-2	chr7	43347411	43348411	+	727.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-3430.0	NM_001271019	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121352770-2	chr11	121352270	121353270	+	727.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025793, intron 1 of 9)	intron (NM_025793, intron 1 of 9)	1677.0	NM_025793	66840.0	Mm.103986	NM_025793	ENSMUSG00000025173	Wdr45b	0610008N23Rik|AA408735|D16Bwg0193e|WIPI-3|Wdr45l	WD repeat domain 45B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9201486-2	chr3	9200986	9201986	+	727.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49081.0	NM_177660	229055.0	Mm.103262	NM_177660	ENSMUSG00000069114	Zbtb10	4832414A18|AU021107|RINZF	zinc finger and BTB domain containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-93651197-3	chr14	93650695	93651695	+	727.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081377, intron 2 of 4)	intron (NM_001081377, intron 2 of 4)	239474.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	4.0	7.0	9.0	2.0	2.0	6.0
Merged-chr3-41303017-1	chr3	41302517	41303517	+	727.0	f0_balb.idr	Intergenic	MER2|DNA|TcMar-Tigger	190182.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-39231026-2	chr15	39230559	39231559	+	727.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001256383, intron 1 of 25)	MERV1_I-int|LTR|ERV1	32773.0	NM_053271	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110369839-2	chr11	110369339	110370339	+	727.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29263.0	NM_001356345	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122553269-3	chr10	122552769	122553769	+	727.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16622.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	4.0	2.0	0.0	0.0	3.5	0.0
Merged-chr9-15302218-1	chr9	15301718	15302718	+	727.0	f0_c57.idr	promoter-TSS (NM_133732)	promoter-TSS (NM_133732)	-611.0	NM_133732	70984.0	Mm.261842	NM_133732	ENSMUSG00000031938	4931406C07Rik	-	RIKEN cDNA 4931406C07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84638060-2	chr8	84637560	84638560	+	727.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252060, intron 45 of 47)	B3A|SINE|B2	24792.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	3.0	8.5	1.0	2.0	5.0	0.0
Merged-chr7-81326026-2	chr7	81325526	81326526	+	727.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 18 of 21)	intron (NM_008803, intron 18 of 21)	19208.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100494576-2	chr15	100494083	100495083	+	727.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153407, intron 1 of 4)	intron (NM_153407, intron 1 of 4)	656.0	NM_153407	207785.0	Mm.294969	NM_153407	ENSMUSG00000044636	Csrnp2	CSRNP-2|Csnrp2|taip-12	cysteine-serine-rich nuclear protein 2	protein-coding	3.0	3.0	3.0	2.0	5.0	2.0
Merged-chr5-108369702-2	chr5	108369202	108370202	+	727.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18671.0	NM_008806	18587.0	Mm.1372	NM_008806	ENSMUSG00000029491	Pde6b	Pdeb|r|rd|rd-1|rd1|rd10	phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-17858850-2	chr5	17858350	17859350	+	727.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	RMER1B|Other|Other	-9058.0	NM_001159556	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45319936-2	chr14	45319436	45320436	+	727.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA7|LINE|L1	-1364.0	NM_015774	50527.0	Mm.387108	NM_015774	ENSMUSG00000021831	Ero1l	ERO1-L|Ero1a	ERO1-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100212840-2	chr7	100212340	100213340	+	727.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-14767.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-92912149-2	chr2	92911649	92912649	+	727.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2952.0	NM_030725	80976.0	Mm.33490	NM_030725	ENSMUSG00000027220	Syt13	5730409J20Rik|AI549909|mKIAA1427	synaptotagmin XIII	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-47276774-2	chr4	47276274	47277274	+	727.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 14 of 39)	intron (NM_009928, intron 14 of 39)	68762.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35764522-1	chr16	35764022	35765022	+	727.0	f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	intron (NM_153550, intron 1 of 8)	4834.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	36.5	103.0	62.0	52.5	137.0	96.0
Merged-chr15-79073613-1	chr15	79073113	79074113	+	727.0	f1_balb.idr	Intergenic	B2_Mm1a|SINE|B2	-1610.0	NM_145139	223691.0	Mm.206404	NM_145139	ENSMUSG00000033047	Eif3l	0610011H21Rik|D15N1e|Eif3eip|Eif3ip|Eif3s6ip|HSP-66Y|PAF67	eukaryotic translation initiation factor 3, subunit L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118899515-1	chr2	118899015	118900015	+	727.0	f1_c57bl6.idr	Intergenic	Intergenic	-2100.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	0.0	0.0	0.0	8.5	0.0	0.5
Merged-chr8-61587646-2	chr8	61587146	61588146	+	727.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	3523.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	2.0	3.0	11.0	5.5	12.5	7.5
Merged-chr2-117196354-2	chr2	117195854	117196854	+	727.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11227.0	NR_030440	732489.0		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57767293-3	chr6	57766785	57767785	+	727.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 3 of 4)	intron (NM_146168, intron 3 of 4)	57840.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31242196-1	chr5	31241696	31242696	+	727.0	f1_c57bl6.idr	intron (NM_147201, intron 1 of 17)	intron (NM_147201, intron 1 of 17)	1278.0	NM_147201	192292.0	Mm.292040	NM_147201	ENSMUSG00000029148	Nrbp1	B230344L17Rik|Nrbp	nuclear receptor binding protein 1	protein-coding	6.5	12.5	14.0	4.5	7.0	10.0
Merged-chr11-97698871-4	chr11	97698384	97699384	+	726.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163307, intron 1 of 10)	intron (NM_001163307, intron 1 of 10)	500.0	NM_001163307	22658.0	Mm.2418	NM_009545	ENSMUSG00000018537	Pcgf2	Mel18|Rnf110|Zfp144|mel-18	polycomb group ring finger 2	protein-coding	6.5	0.0	0.0	2.0	0.0	0.0
Merged-chr4-46356937-4	chr4	46356428	46357428	+	726.891663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12734.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	0.0	4.0	0.0	1.5	0.0	0.0
Merged-chr3-90117881-3	chr3	90117382	90118382	+	726.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029937, intron 3 of 39)	RSINE1|SINE|B4	13750.0	NM_029937	77595.0	Mm.159949	NM_029937	ENSMUSG00000027939	Nup210l	4930548O11Rik|R26-EGFP|Tg(Gt(ROSA)26Sor-EGFP)130910Eps	nucleoporin 210-like	protein-coding	0.0	1.5	0.0	0.0	1.5	0.0
Merged-chr10-84055954-3	chr10	84055459	84056459	+	726.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152790, intron 2 of 4)	Tigger19a|DNA|TcMar-Tigger	44738.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21126525-2	chr9	21126025	21127025	+	726.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205312, intron 3 of 24)	intron (NM_001205312, intron 3 of 24)	4750.0	NM_018793	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173634380-4	chr1	173633808	173634808	+	726.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175026, intron 1 of 6)	intron (NM_175026, intron 1 of 6)	3449.0	NM_175026	236312.0	Mm.447	NM_175026	ENSMUSG00000043263	Ifi209	4930422C14|AI447904|Ifix|Pyhin-1|Pyhin1	interferon activated gene 209	protein-coding	3.0	15.5	16.5	4.5	12.5	18.0
Merged-chr13-105290897-3	chr13	105290437	105291437	+	726.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360891, intron 1 of 7)	MMVL30-int|LTR|ERV1	2077.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44539893-2	chr11	44539457	44540457	+	726.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 3 of 5)	MT2B|LTR|ERVL	20580.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	20.0	38.5	38.5	8.0	47.5	30.0
Merged-chr14-62167258-2	chr14	62166758	62167758	+	726.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17D2|LTR|ERVK	125721.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-69733696-2	chr14	69733196	69734196	+	726.833313	f1_balb.idr|f1_c57bl6.idr	intron (NR_130157, intron 1 of 2)	B3|SINE|B2	862.0	NR_130157	75016.0	Mm.394574	NR_130157	ENSMUSG00000097284	4930480K23Rik	-	RIKEN cDNA 4930480K23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-73109291-3	chr11	73108790	73109790	+	726.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361245, intron 2 of 30)	intron (NM_001361245, intron 2 of 30)	18695.0	NM_172944	16407.0	Mm.96	NM_008399	ENSMUSG00000005947	Itgae	A530055J10|CD103|aM290|alpha-E1|alpha-M290	integrin alpha E, epithelial-associated	protein-coding	0.0	0.0	0.0	2.0	3.0	3.0
Merged-chr1-95468337-4	chr1	95467855	95468855	+	726.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	154727.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-73049482-2	chr11	73048982	73049982	+	726.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_025818, intron 1 of 12)	intron (NM_025818, intron 1 of 12)	1615.0	NM_025818	66874.0	Mm.41903	NM_025818	ENSMUSG00000020783	Ncbp3	1200014J11Rik|C130061O14Rik|C78393	nuclear cap binding subunit 3	protein-coding	0.5	7.5	1.0	0.5	8.0	3.0
Merged-chr15-97717956-3	chr15	97717474	97718474	+	726.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008902, intron 5 of 8)	URR1B|DNA|hAT-Charlie	3176.0	NM_008902	19011.0	Mm.1001	NM_008902	ENSMUSG00000022468	Endou	Pp11r|Tcl-30	endonuclease, polyU-specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99024878-3	chr15	99024376	99025376	+	726.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5015.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-10129353-2	chr18	10128853	10129853	+	726.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_009071, exon 9 of 33)	exon (NM_009071, exon 9 of 33)	52439.0	NM_009071	19877.0	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-39009263-2	chr2	39008763	39009763	+	726.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_028809, intron 1 of 3)	intron (NM_028809, intron 1 of 3)	1124.0	NM_028809	74192.0	Mm.38155	NM_028809	ENSMUSG00000026755	Arpc5l	2010015J01Rik|AI852867|ARC16-2|AW555592|AW742746	actin related protein 2/3 complex, subunit 5-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91645918-2	chr16	91645421	91646421	+	726.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010256, intron 1 of 21)	intron (NM_010256, intron 1 of 21)	1051.0	NM_010256	14450.0	Mm.4505	NM_010256	ENSMUSG00000022962	Gart	Gaps|Prgs	phosphoribosylglycinamide formyltransferase	protein-coding	2.5	13.0	5.0	10.0	5.5	8.5
Merged-chr6-31208868-2	chr6	31208368	31209368	+	726.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	URR1B|DNA|hAT-Charlie	9606.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-93778349-1	chr13	93777849	93778849	+	726.75	f0_balb.idr	intron (NM_009712, intron 1 of 7)	L1_Mus2|LINE|L1	6670.0	NM_009712	11881.0	Mm.300178	NM_009712	ENSMUSG00000042082	Arsb	1110007C02Rik|AI480648|As-1|As-1r|As-1s|As-1t|As1|As1-r|As1-s|As1-t|Asr-1|Ast-1	arylsulfatase B	protein-coding	13.0	3.5	5.5	6.0	11.5	19.0
Merged-chr12-35269249-2	chr12	35268794	35269794	+	726.75	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74397.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	30.5	63.5	37.5	8.5	27.0	33.0
Merged-chr5-115554241-3	chr5	115553683	115554683	+	726.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133915, exon 12 of 12)	3' UTR (NM_133915, exon 12 of 12)	-5284.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	1.5	4.5	0.0	0.0	1.5	4.0
Merged-chr8-71988716-3	chr8	71988248	71989248	+	726.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024444, intron 12 of 12)	intron (NM_024444, intron 12 of 12)	20878.0	NM_024444	72054.0	Mm.160020	NM_024444	ENSMUSG00000003484	Cyp4f18	1810054N16Rik|Cyp4f3|Cypf18	cytochrome P450, family 4, subfamily f, polypeptide 18	protein-coding	6.5	1.5	11.0	8.0	3.0	7.5
Merged-chr10-118095140-4	chr10	118094634	118095634	+	726.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46653.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	36.0	98.5	68.0	34.5	115.0	168.0
Merged-chr2-3788570-3	chr2	3788032	3789032	+	726.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75074.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-127624644-1	chr5	127624144	127625144	+	726.666687	f0_balb.idr	Intergenic	B3A|SINE|B2	-7252.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	23.0	14.5	7.0	8.5	18.0	6.0
Merged-chr15-66803902-3	chr15	66803398	66804398	+	726.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029841, intron 1 of 7)	intron (NM_001029841, intron 1 of 7)	27931.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26928346-3	chr2	26927853	26928853	+	726.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011512, intron 1 of 5)	intron (NM_011512, intron 1 of 5)	5158.0	NM_011512	20932.0	Mm.300594	NM_011512	ENSMUSG00000014867	Surf4	AL033340|AL033373|Surf-4	surfeit gene 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140829427-5	chr5	140828956	140829956	+	726.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 1 of 3)	ID_B1|SINE|B4	975.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47006195-4	chr17	47005678	47006678	+	726.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146078, intron 1 of 46)	L1MB5|LINE|L1	4354.0	NM_146078	224826.0	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-19144691-3	chr19	19144195	19145195	+	726.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-33499.0	NM_001043354	225998.0	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta|hstp	RAR-related orphan receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165700710-3	chr1	165700187	165701187	+	726.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	7407.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-68567656-2	chr14	68567156	68568156	+	726.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_021475, intron 12 of 13)	intron (NM_021475, intron 12 of 13)	14416.0	NM_021475	58860.0	Mm.36742	NM_021475	ENSMUSG00000022057	Adamdec1	2210414L24Rik|AI574231|Dcsn	ADAM-like, decysin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101062197-2	chr7	101061707	101062707	+	726.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46568.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	0.0	2.0	1.0	1.5	1.5	1.0
Merged-chr19-24225001-3	chr19	24224531	24225531	+	726.655579	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360392)	promoter-TSS (NM_001360392)	97.0	NM_011597	21873.0	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	15.0	0.0	11.0	2.0	0.0	1.5
Merged-chr16-52097008-3	chr16	52096510	52097510	+	726.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	Lx3C|LINE|L1	65461.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28601189-3	chr7	28600686	28601686	+	726.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3002.0	NM_027470	70584.0	Mm.21876	NM_027470	ENSMUSG00000030602	Pak4	5730488L07Rik|AW555722|mKIAA1142	p21 (RAC1) activated kinase 4	protein-coding	0.0	0.5	0.0	1.0	0.0	0.0
Merged-chr7-99374529-3	chr7	99374038	99375038	+	726.533325	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-6980.0	NM_001362168	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	4.5	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101615796-3	chr7	101615324	101616324	+	726.533325	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34663.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	12.5	8.5	31.5	28.0	21.5	17.5
Merged-chr5-30111303-2	chr5	30110803	30111803	+	726.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167879, intron 2 of 5)	intron (NM_001167879, intron 2 of 5)	-5217.0	NM_001256263	433868.0	Mm.450696	NM_001256263	ENSMUSG00000086815	3110082J24Rik	-	RIKEN cDNA 3110082J24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53143817-2	chr19	53143317	53144317	+	726.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013758)	promoter-TSS (NM_013758)	-180.0	NM_013758	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-112180340-4	chr7	112179830	112180830	+	726.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20848.0	NM_001360257	50781.0	Mm.55143	NM_015814	ENSMUSG00000030772	Dkk3	AW061014|C87148|dkk-3|mDkk-3	dickkopf WNT signaling pathway inhibitor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-40583555-2	chr8	40583055	40584055	+	726.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040699, intron 6 of 13)	intron (NM_001040699, intron 6 of 13)	51237.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	4.5	7.5	9.0	0.0	0.0	1.5
Merged-chr1-171827302-2	chr1	171826802	171827802	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12395.0	NM_001252472	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	4.0	16.0	8.0	6.0	38.0	25.5
Merged-chr4-135966351-2	chr4	135965851	135966851	+	726.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356493, intron 4 of 10)	intron (NM_001356493, intron 4 of 10)	2626.0	NM_001356493	74246.0	Mm.247946	NM_178389	ENSMUSG00000028671	Gale	2310002A12Rik|AI323962	galactose-4-epimerase, UDP	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr5-145167660-1	chr5	145167160	145168160	+	726.5	f0_balb.idr	promoter-TSS (NM_133735)	promoter-TSS (NM_133735)	447.0	NM_001291248	54188.0	Mm.196884	NM_178576	ENSMUSG00000029625	Cpsf4	30kDa|C79664	cleavage and polyadenylation specific factor 4	protein-coding	12.5	15.0	10.0	12.5	13.5	9.0
Merged-chr12-3222311-2	chr12	3221811	3222811	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13480.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-116242058-2	chr8	116241558	116242558	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-262957.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66125787-2	chr9	66125287	66126287	+	726.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019727)	promoter-TSS (NM_019727)	-824.0	NM_001359210	68250.0	Mm.27107	NM_026635	ENSMUSG00000032381	Fam96a	5730536A07Rik	family with sequence similarity 96, member A	protein-coding	46.5	74.0	62.0	52.0	76.0	54.5
Merged-chr17-57484331-2	chr17	57483831	57484831	+	726.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001355723)	TTS (NM_001355723)	60983.0	NM_001104591	224916.0	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132628931-2	chr4	132628431	132629431	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10115.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	1.0	2.0	4.0	4.0	7.5	2.5
Merged-chr10-98727806-2	chr10	98727306	98728306	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-186836.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97997123-2	chr3	97996623	97997623	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16415.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120176473-2	chr8	120175973	120176973	+	726.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033980, intron 1 of 7)	intron (NM_001033980, intron 1 of 7)	996.0	NM_001033980	436062.0	Mm.334852	NM_001033980	ENSMUSG00000042269	Fam92b	1700120B06Rik	family with sequence similarity 92, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63549690-2	chr4	63549190	63550190	+	726.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024173, intron 2 of 2)	intron (NM_024173, intron 2 of 2)	4925.0	NM_024173	66290.0	Mm.371615	NM_024173	ENSMUSG00000039105	Atp6v1g1	1810024D14Rik|AA960677|ATP6J|Atp6g1|VAG1|Vma10	ATPase, H+ transporting, lysosomal V1 subunit G1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-178420273-2	chr2	178419773	178420773	+	726.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081289, exon 4 of 4)	exon (NM_001081289, exon 4 of 4)	5739.0	NM_001081289	71532.0	Mm.40216	NM_001081289	ENSMUSG00000070476	Fam217b	9030418K01Rik|AI851938	family with sequence similarity 217, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44993810-2	chr7	44993310	44994310	+	726.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029410, intron 5 of 6)	intron (NM_029410, intron 5 of 6)	3769.0	NM_029410	75736.0	Mm.261006	NM_029410	ENSMUSG00000003190	Bcl2l12	2810475P17Rik|5430429M05Rik|Bcl-L12|Bcl2-L12	BCL2-like 12 (proline rich)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79633920-2	chr2	79633420	79634420	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1505.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	7.5	7.0	1.5	12.5	11.5	3.5
Merged-chr18-67219854-2	chr18	67219354	67220354	+	726.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177137, intron 11 of 11)	intron (NM_177137, intron 11 of 11)	14495.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95686247-2	chr11	95685747	95686747	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19290.0	NM_008831	18673.0	Mm.263862	NM_008831	ENSMUSG00000038845	Phb	Bap32	prohibitin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55787840-2	chr19	55787340	55788340	+	726.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	B4A|SINE|B4	46030.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-15196390-2	chr3	15195890	15196890	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	135912.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-66423890-2	chr18	66423390	66424390	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34714.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25483119-2	chr2	25482619	25483619	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10792.0	NM_029958	77701.0	Mm.99123	NM_029958	ENSMUSG00000026943	Lcn12	9230102M18Rik	lipocalin 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129322948-2	chr2	129322408	129323408	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-12936.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	19.0	30.0	4.0	21.5	43.0	27.5
Merged-chr19-11264902-2	chr19	11264402	11265402	+	726.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007641, intron 1 of 6)	intron (NM_007641, intron 1 of 6)	1249.0	NM_007641	12482.0	Mm.4046	NM_007641	ENSMUSG00000024673	Ms4a1	AA960661|Cd20|Ly-44|Ms4a2	membrane-spanning 4-domains, subfamily A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-104288355-2	chr13	104287855	104288855	+	726.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_136938, intron 1 of 26)	intron (NR_136938, intron 1 of 26)	520.0	NM_001081020	108154.0	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-110181853-2	chr2	110181353	110182353	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	123872.0	NM_130452	170442.0	Mm.27335	NM_130452	ENSMUSG00000041660	Bbox1	AI874739	butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167415968-2	chr2	167415468	167416468	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5742.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29270296-2	chr6	29269796	29270796	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2192.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-45765100-2	chr16	45764600	45765600	+	726.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357078, intron 11 of 16)	intron (NM_001357078, intron 11 of 16)	-22145.0	NM_172511	213012.0	Mm.247453	NM_172511	ENSMUSG00000033157	Abhd10	-	abhydrolase domain containing 10	protein-coding	8.0	15.5	3.5	13.5	1.5	3.5
Merged-chr7-63941301-2	chr7	63940798	63941798	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2383.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	25.0	58.0	19.0	4.5	38.0	14.5
Merged-chr11-117115910-2	chr11	117115410	117116410	+	726.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 1 of 16)	CpG	738.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-119499510-3	chr6	119499024	119500024	+	726.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009525, intron 1 of 4)	intron (NM_009525, intron 1 of 4)	19856.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49198390-2	chr13	49197890	49198890	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	10843.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7066671-2	chr19	7066171	7067171	+	726.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134147, intron 3 of 10)	intron (NM_134147, intron 3 of 10)	9903.0	NM_134147	107227.0	Mm.439977	NM_134147	ENSMUSG00000036278	Macrod1	AI604841|AW743046|D930010J01Rik|Lrp16	MACRO domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6736101-2	chr17	6735601	6736601	+	726.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183368, intron 7 of 8)	intron (NM_183368, intron 7 of 8)	30271.0	NM_183368	83672.0	Mm.442201	NM_031395	ENSMUSG00000041831	Sytl3	A430092N21|Slp3|Slp3-a|Slp3-b|mFLJ00307	synaptotagmin-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52024572-2	chr13	52024072	52025072	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72169.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-85049357-2	chr2	85048857	85049857	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1103.0	NM_001081260	228140.0	Mm.23606	NM_001081260	ENSMUSG00000033955	Tnks1bp1	Tab182|mKIAA1741	tankyrase 1 binding protein 1	protein-coding	0.0	2.0	3.0	0.0	0.0	3.5
Merged-chr8-117200537-2	chr8	117200037	117201037	+	726.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081151, intron 9 of 10)	intron (NM_001081151, intron 9 of 10)	42402.0	NM_001081151	209239.0	Mm.132992	NM_001081151	ENSMUSG00000052557	Gan	A330045G18|gigaxonin	giant axonal neuropathy	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120305927-2	chr11	120305427	120306427	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41486.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91420528-2	chr16	91420028	91421028	+	726.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008349, intron 5 of 6)	intron (NM_008349, intron 5 of 6)	14293.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61468053-2	chr11	61467553	61468553	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4A|LTR|ERVK	-14061.0	NM_001291024	22671.0	Mm.89201	NM_009548	ENSMUSG00000010086	Rnf112	ZNF179|Zfp179|bfp|neurolastin	ring finger protein 112	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10694867-2	chr19	10694367	10695367	+	726.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	RSINE1|SINE|B4	-5901.0	NM_001361964	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6264490-2	chr19	6263990	6264990	+	726.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029830)	promoter-TSS (NR_029830)	-153.0	NR_029830	723957.0		NR_029830	ENSMUSG00000065582	Mir194-2	Mirn194-2|mir-194-2	microRNA 194-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70840715-2	chr8	70840215	70841215	+	726.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027560)	promoter-TSS (NM_027560)	-995.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	9.0	22.0	11.5	7.0	18.5	13.0
Merged-chr3-27618929-2	chr3	27618429	27619429	+	726.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 4 of 26)	ID_B1|SINE|B4	-33934.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142528604-2	chr3	142528104	142529104	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1732.0	NM_001083312	229900.0	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97609367-3	chr3	97608871	97609871	+	726.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026539, intron 1 of 22)	intron (NM_026539, intron 1 of 22)	819.0	NM_026539	68058.0	Mm.31761	NM_026539	ENSMUSG00000028089	Chd1l	4432404A22Rik|Alc1|Snf2p	chromodomain helicase DNA binding protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100215517-3	chr7	100215018	100216018	+	726.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12089.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44249709-4	chr9	44249226	44250226	+	726.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133226, exon 6 of 11)	exon (NM_133226, exon 6 of 11)	1738.0	NM_133226	170761.0	Mm.29872	NM_133226	ENSMUSG00000032105	Pdzd3	NaPi-Cap2|Pdzk2	PDZ domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84871526-4	chr8	84871003	84872003	+	726.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027954)	promoter-TSS (NM_027954)	-608.0	NR_031759	71846.0	Mm.229128	NM_027954	ENSMUSG00000003824	Syce2	1700013H19Rik|AA407907|Cesc1	synaptonemal complex central element protein 2	protein-coding	13.0	112.5	78.5	41.5	93.0	86.0
Merged-chr1-161963190-3	chr1	161962688	161963688	+	726.388855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204904, intron 3 of 6)	intron (NM_001204904, intron 3 of 6)	5960.0	NM_001204905	75368.0	Mm.108728	NM_001204904	ENSMUSG00000086277	4930558K02Rik	-	RIKEN cDNA 4930558K02 gene	protein-coding	8.0	2.0	0.5	7.5	2.0	3.5
Merged-chr2-62638828-4	chr2	62638316	62639316	+	726.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027835, intron 2 of 15)	Lx9|LINE|L1	7439.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-99300471-4	chr6	99299979	99300979	+	726.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053202, intron 2 of 18)	intron (NM_053202, intron 2 of 18)	-33964.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57094942-2	chr17	57094442	57095442	+	726.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_033508, intron 3 of 3)	MTD|LTR|ERVL-MaLR	-7160.0	NM_009451	22153.0	Mm.7420	NM_009451	ENSMUSG00000062591	Tubb4a	AI325297|M(beta)4|Tubb|Tubb4	tubulin, beta 4A class IVA	protein-coding	3.5	3.0	5.0	0.0	0.5	0.5
Merged-chr1-172162207-2	chr1	172161707	172162707	+	726.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_151641, intron 2 of 13)	B3|SINE|B2	14192.0	NM_001357204	98193.0	Mm.159915	NM_153555	ENSMUSG00000026554	Dcaf8	AA408877|AA433120|AA792214|AU018973|C76055|D1Dau35e|D1Ucla4|H326|Wdr42a	DDB1 and CUL4 associated factor 8	protein-coding	0.0	0.0	0.0	0.0	1.5	0.0
Merged-chr2-3645952-2	chr2	3645452	3646452	+	726.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67506.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131416803-2	chr2	131416303	131417303	+	726.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63911.0	NM_178607	51902.0	Mm.477523	NM_178607	ENSMUSG00000048911	Rnf24	2810473M14Rik|4930505A13Rik|AI317164|C86507|D2Ertd504e	ring finger protein 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-26652116-3	chr14	26651588	26652588	+	726.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007479, intron 3 of 5)	B2_Mm2|SINE|B2	13954.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47393533-3	chr14	47393062	47394062	+	726.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144553, intron 15 of 18)	intron (NM_144553, intron 15 of 18)	19702.0	NM_001145953	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	8.0	3.0	5.5	2.0	8.0	5.0
Merged-chr15-98835326-2	chr15	98834826	98835826	+	726.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033276, exon 52 of 55)	exon (NM_001033276, exon 52 of 55)	-3818.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116047188-3	chr3	116046688	116047688	+	726.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38891.0	NM_001163514	58193.0	Mm.41739	NM_021388	ENSMUSG00000027963	Extl2	3000001D04Rik|AW146439	exostoses (multiple)-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-113777362-3	chr11	113776873	113777873	+	726.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25558.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	1.0	1.5	2.0	0.0	0.0	0.0
Merged-chr3-15285655-3	chr3	15285181	15286181	+	726.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	46621.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	64.0	87.5	75.5	66.5	95.5	80.0
Merged-chr10-25196463-3	chr10	25195950	25196950	+	726.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 7 of 7)	Lx7|LINE|L1	3720.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103531975-3	chr14	103531456	103532456	+	726.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022886, intron 3 of 30)	intron (NM_022886, intron 3 of 30)	18615.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35173049-2	chr7	35172559	35173559	+	726.291626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13326.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4333837-3	chr18	4333326	4334326	+	726.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007746, exon 7 of 8)	exon (NM_007746, exon 7 of 8)	19127.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129504808-3	chr4	129504303	129505303	+	726.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8778.0	NM_010807	17357.0	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	2.0	6.5	6.0	9.0	8.0	6.5
Merged-chr15-81026300-2	chr15	81025800	81026800	+	726.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 4 of 13)	intron (NM_001082536, intron 4 of 13)	48535.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr8-71538680-2	chr8	71538180	71539180	+	726.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C2|LTR|ERVK	-1243.0	NM_198095	69550.0	Mm.260325	NM_198095	ENSMUSG00000046718	Bst2	2310015I10Rik|Bst-2|C87040|CD317|DAMP-1|GREG	bone marrow stromal cell antigen 2	protein-coding	32.5	116.5	45.5	38.5	64.0	33.0
Merged-chr15-83030428-2	chr15	83029928	83030928	+	726.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271413)	promoter-TSS (NM_001271413)	-478.0	NM_001271413	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	6.5	4.0	12.0	6.0	2.5	9.0
Merged-chr3-105981185-2	chr3	105980687	105981687	+	726.25	f0_balb.idr|f1_balb.idr	intron (NM_007696, intron 8 of 10)	intron (NM_007696, intron 8 of 10)	7385.0	NM_007696	12659.0	Mm.431947	NM_007696	ENSMUSG00000074340	Ovgp1	120kDa|AU016433|AU019448|Chit5|MOGP|OGP|muc9	oviductal glycoprotein 1	protein-coding	6.5	4.0	4.0	33.5	56.0	38.5
Merged-chr3-74001468-2	chr3	74000968	74001968	+	726.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	15809.0	NR_040450	100504692.0	Mm.394454	NR_040450	ENSMUSG00000104096	Gm20356	-	predicted gene, 20356	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73426163-4	chr15	73425662	73426662	+	726.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2971.0	NM_001358045	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-73045178-2	chr11	73044678	73045678	+	726.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-2689.0	NM_025818	66874.0	Mm.41903	NM_025818	ENSMUSG00000020783	Ncbp3	1200014J11Rik|C130061O14Rik|C78393	nuclear cap binding subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119443600-2	chr11	119443100	119444100	+	726.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47635.0	NR_153849	78439.0	Mm.440446	NR_153849	ENSMUSG00000109408	A930037H05Rik	Gm44935	RIKEN cDNA A930037H05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57100578-4	chr17	57100065	57101065	+	726.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033508, intron 3 of 3)	ID_B1|SINE|B4	-4820.0	NM_009404	21950.0	Mm.41171	NM_009404	ENSMUSG00000035678	Tnfsf9	4-1BB-L|4-1BBL|AI848817|Cd137l|Ly63l	tumor necrosis factor (ligand) superfamily, member 9	protein-coding	2.5	2.5	3.0	5.0	1.5	1.5
Merged-chr8-94418176-4	chr8	94417651	94418651	+	726.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16952.0	NR_015514	320377.0	Mm.486022	NR_015514		9330175E14Rik	A630085K21	RIKEN cDNA 9330175E14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129130307-4	chr4	129129821	129130821	+	726.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6678.0	NM_027402	384061.0	Mm.44075	NM_027402	ENSMUSG00000001334	Fndc5	1500001L03Rik|AI836596|C87088|PeP|Pxp	fibronectin type III domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-33043008-3	chr19	33042509	33043509	+	726.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5A|LINE|L1	-114103.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-71218807-3	chr14	71218304	71219304	+	726.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR2_Mm|LTR|ERVK	-32469.0	NR_046075	100043132.0	Mm.399336	NR_046075	ENSMUSG00000115139	Gm4251	-	predicted gene 4251	ncRNA	0.0	0.0	1.0	0.0	0.0	1.5
Merged-chr4-114997900-3	chr4	114997412	114998412	+	726.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2206.0	NM_001304559	20460.0	Mm.3988	NM_009185	ENSMUSG00000028718	Stil	Sil	Scl/Tal1 interrupting locus	protein-coding	0.0	1.0	1.0	0.0	0.0	0.0
Merged-chr11-75325451-4	chr11	75324855	75325855	+	726.214294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026653, intron 5 of 16)	intron (NM_026653, intron 5 of 16)	23028.0	NM_001164223	68275.0	Mm.102574	NM_026653	ENSMUSG00000000751	Rpa1	5031405K23Rik|70kDa|AA589576|AW557552|RF-A|RP-A|Rpa	replication protein A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87498351-4	chr3	87497877	87498877	+	726.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113238, intron 11 of 11)	Lx8|LINE|L1	-27201.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	16.5	80.5	54.0	54.5	93.0	86.5
Merged-chr18-82505876-2	chr18	82505376	82506376	+	726.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025245, intron 2 of 3)	MLT1B|LTR|ERVL-MaLR	30753.0	NM_010777	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94567502-2	chr16	94567002	94568002	+	726.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-2704.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-144240162-3	chr1	144239650	144240650	+	726.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	8954.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31628410-2	chr15	31627910	31628910	+	726.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	26294.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-68611528-2	chr14	68611028	68612028	+	726.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_102399, intron 17 of 21)	MTEa|LTR|ERVL-MaLR	-29456.0	NM_021475	58860.0	Mm.36742	NM_021475	ENSMUSG00000022057	Adamdec1	2210414L24Rik|AI574231|Dcsn	ADAM-like, decysin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99183033-2	chr10	99182533	99183533	+	726.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	B1_Mur4|SINE|Alu	74898.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-92678741-4	chr13	92678238	92679238	+	726.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172588, intron 2 of 11)	intron (NM_172588, intron 2 of 11)	67600.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137718130-4	chr5	137717600	137718600	+	726.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21702.0	NM_175521	243300.0	Mm.74750	NM_175521	ENSMUSG00000045348	Nyap1	6430598A04Rik	neuronal tyrosine-phosphorylated phosphoinositide 3-kinase adaptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-24395014-4	chr8	24394513	24395513	+	726.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43933.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124605528-4	chr2	124605023	124606023	+	726.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-4773.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-130762262-3	chr7	130761768	130762768	+	726.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021314, intron 17 of 17)	intron (NM_021314, intron 17 of 17)	-11801.0	NM_001081038	330660.0	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-133115154-3	chr7	133114659	133115659	+	726.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009980, intron 1 of 10)	intron (NM_009980, intron 1 of 10)	8324.0	NM_009980	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80706404-2	chr15	80705904	80706904	+	726.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4909.0	NM_144812	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21429184-2	chr16	21428684	21429684	+	726.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285894, intron 1 of 45)	B4|SINE|B4	6066.0	NM_001285894	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37658743-4	chr13	37658261	37659261	+	726.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-167277.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	12.0	39.0	27.0	6.0	30.0	16.0
Merged-chr11-101261084-2	chr11	101260584	101261584	+	726.083313	f1_balb.idr|f1_c57bl6.idr	exon (NM_175638, exon 1 of 19)	exon (NM_175638, exon 1 of 19)	517.0	NM_175638	69847.0	Mm.23656	NM_175638	ENSMUSG00000035112	Wnk4	2010002J11Rik|Pha2b|Prkwnk4	WNK lysine deficient protein kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-69664577-3	chr18	69664119	69665119	+	726.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 15 of 19)	intron (NM_001361128, intron 15 of 19)	-260940.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24483009-2	chr7	24482509	24483509	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153112, intron 1 of 8)	intron (NM_153112, intron 1 of 8)	986.0	NM_153112	260299.0	Mm.178322	NM_153112	ENSMUSG00000054793	Cadm4	Igdf4c|Igsf4c|Tsll2	cell adhesion molecule 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24263675-1	chr5	24263175	24264175	+	726.0	f1_balb.idr	Intergenic	B4A|SINE|B4	6147.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	8.0	0.0	0.0	6.5	2.0	1.5
Merged-chr16-10963118-2	chr16	10962618	10963618	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 3 of 3)	intron (NM_019980, intron 3 of 3)	30003.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75101061-2	chr8	75100561	75101561	+	726.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010442)	TTS (NM_010442)	7443.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	1.0	3.0	0.5	3.5	1.0	6.0
Merged-chr10-19185590-2	chr10	19185091	19186091	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038022, intron 1 of 1)	intron (NR_038022, intron 1 of 1)	18353.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.0	1.5	0.5	4.0	14.0	2.5
Merged-chr7-110646035-2	chr7	110645535	110646535	+	726.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18378.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68124445-1	chr10	68123945	68124945	+	726.0	f1_balb.idr	intron (NM_023598, intron 7 of 9)	intron (NM_023598, intron 7 of 9)	144875.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	13.0	16.5	12.0	14.5	15.5	20.5
Merged-chr10-119049165-2	chr10	119048665	119049665	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152787, intron 2 of 3)	RLTR30D2_MM|LTR|ERV1	1334.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-26426484-3	chr12	26425969	26426969	+	726.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11207.0	NM_080563	108089.0	Mm.214932	NM_080563	ENSMUSG00000020642	Rnf144a	Rnf144|UIP4|Ubce7ip4	ring finger protein 144A	protein-coding	0.0	0.0	1.5	51.0	36.0	32.0
Merged-chr5-99209378-2	chr5	99208878	99209878	+	726.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43549.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-41289179-2	chr7	41288679	41289679	+	726.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033782, exon 3 of 3)	exon (NM_001033782, exon 3 of 3)	4852.0	NM_001033782	434172.0	Mm.247214	NM_001033782	ENSMUSG00000072259	Gm5592	EG434172	predicted gene 5592	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-87224423-1	chr7	87223923	87224923	+	726.0	f1_balb.idr	Intergenic	Lx7|LINE|L1	-22226.0	NM_001285835	50490.0	Mm.31748	NM_015760	ENSMUSG00000030562	Nox4	AI648021	NADPH oxidase 4	protein-coding	6.0	2.0	2.5	2.5	1.5	2.5
Merged-chr19-3674305-2	chr19	3673805	3674805	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008513, intron 1 of 22)	intron (NM_008513, intron 1 of 22)	12259.0	NM_008513	16973.0	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-88254736-1	chr2	88254236	88255236	+	726.0	f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	20311.0	NM_207566	404329.0	Mm.377943	NM_207566	ENSMUSG00000075132	Olfr1173	-	olfactory receptor 1173	protein-coding	2.0	0.0	0.5	0.0	0.0	0.0
Merged-chr1-149840378-2	chr1	149839878	149840878	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 17 of 17)	intron (NM_008869, intron 17 of 17)	82061.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180118456-2	chr2	180117956	180118956	+	726.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144500)	promoter-TSS (NM_144500)	-910.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	6.5	11.0	17.5	4.5	13.5	16.5
Merged-chr14-65374225-3	chr14	65373709	65374709	+	726.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199029, intron 1 of 9)	intron (NM_199029, intron 1 of 9)	15533.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	0.0	15.0	0.0	0.0	3.5	4.0
Merged-chr10-99191848-2	chr10	99191348	99192348	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	L1MB7|LINE|L1	-71383.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-75721860-2	chr12	75721360	75722360	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030750, intron 2 of 2)	intron (NM_030750, intron 2 of 2)	13869.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34273651-2	chr5	34273151	34274151	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 1 of 12)	intron (NM_001015039, intron 1 of 12)	14673.0	NM_001015039	231125.0	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-34087311-2	chr4	34086811	34087811	+	726.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_1C-LTR_Mm|LTR|ERVK	-37244.0	NM_026293	67652.0	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56767005-2	chr17	56766505	56767505	+	726.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_144858, exon 3 of 13)	exon (NM_144858, exon 3 of 13)	2254.0	NM_144858	224907.0	Mm.293973	NM_144858	ENSMUSG00000007603	Dus3l	AI662135|AW557805	dihydrouridine synthase 3-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-107275045-3	chr7	107274558	107275558	+	726.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID2|SINE|ID	65613.0	NM_029660	76572.0	Mm.128134	NM_029660	ENSMUSG00000073894	Rbmxl2	1700012H05Rik|Hnrnpg-t	RNA binding motif protein, X-linked-like 2	protein-coding	1.0	1.5	0.5	3.0	0.0	1.0
Merged-chr11-65677963-1	chr11	65677463	65678463	+	726.0	f1_balb.idr	Intergenic	Intergenic	56869.0	NR_030417	791070.0		NR_030417	ENSMUSG00000076460	Mir744	Mirn744|mir-744|mmu-mir-744	microRNA 744	ncRNA	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr4-46591073-3	chr4	46590601	46591601	+	726.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 1 of 11)	intron (NM_001164804, intron 1 of 11)	10828.0	NM_001164804	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	1.0	3.5	0.5	4.5	3.5	2.5
Merged-chr5-36794379-2	chr5	36793879	36794879	+	726.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026242)	TTS (NM_026242)	2375.0	NM_026242	67568.0	Mm.332336	NM_026242	ENSMUSG00000055302	Mrfap1	9130413I22Rik|AL022827|Pam14	Morf4 family associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24174720-2	chr17	24174220	24175220	+	726.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_173186)	TTS (NM_173186)	-5042.0	NM_001361531	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	10.0	0.0	1.0	0.0	2.0	1.0
Merged-chr6-5637487-1	chr6	5636987	5637987	+	726.0	f0_balb.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-88152.0	NM_001191023	13426.0	Mm.20893	NM_010063	ENSMUSG00000029757	Dync1i1	DH IC-1|DHIC-1|DIC|Dncic1|IC74	dynein cytoplasmic 1 intermediate chain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19004016-1	chr10	19003516	19004516	+	726.0	f1_c57bl6.idr	intron (NM_001166402, intron 6 of 7)	intron (NM_001166402, intron 6 of 7)	7947.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	7.0	0.0	0.0	0.0	1.0	0.0
Merged-chr13-64155372-2	chr13	64154843	64155843	+	726.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2144.0	NM_175494	238673.0	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	1.0	0.0	5.0	0.0	8.5	3.0
Merged-chr2-169781986-1	chr2	169781486	169782486	+	726.0	f0_c57.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	148340.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-64588901-2	chr11	64588401	64589401	+	726.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-152227.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	1.0	0.5	0.0	0.0	0.0	3.5
Merged-chr5-99278454-1	chr5	99277954	99278954	+	726.0	f0_balb.idr	Intergenic	Intergenic	-25527.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	3.5	0.0	0.0	0.0	4.5
Merged-chr6-97531236-2	chr6	97530731	97531731	+	726.0	f0_balb.idr|f1_balb.idr	intron (NM_145148, intron 1 of 23)	(CA)n|Simple_repeat|Simple_repeat	-43411.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	2.5	11.5	6.0	0.0	6.0	2.0
Merged-chr8-84154498-1	chr8	84153998	84154998	+	726.0	f1_c57bl6.idr	intron (NM_029045, intron 2 of 8)	intron (NM_029045, intron 2 of 8)	6460.0	NM_029045	74666.0	Mm.33625	NM_029045	ENSMUSG00000008129	4930432K21Rik	-	RIKEN cDNA 4930432K21 gene	protein-coding	0.0	6.5	4.0	2.0	6.0	3.0
Merged-chr8-82361044-3	chr8	82360520	82361520	+	726.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008357, intron 2 of 7)	intron (NM_008357, intron 2 of 7)	41566.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	8.5	2.5	0.5	6.0	6.5	1.0
Merged-chr15-6390260-2	chr15	6389760	6390760	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	3512.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-80706849-3	chr5	80706358	80707358	+	726.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-313713.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139211956-1	chr7	139211456	139212456	+	726.0	f1_balb.idr	intron (NM_001162540, intron 1 of 11)	intron (NM_001162540, intron 1 of 11)	-1032.0	NM_027164	76612.0	Mm.17757	NM_027164	ENSMUSG00000015980	Lrrc27	1700071K18Rik|2310044E02Rik	leucine rich repeat containing 27	protein-coding	4.0	9.5	2.0	5.5	0.0	0.5
Merged-chr10-26710205-1	chr10	26709705	26710705	+	726.0	f1_balb.idr	Intergenic	Intergenic	-35554.0	NR_033633	667572.0	Mm.482728	NR_033633	ENSMUSG00000098179	Gm8709	EG667572	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr1-24586220-2	chr1	24585720	24586720	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007733, intron 1 of 50)	intron (NM_007733, intron 1 of 50)	1217.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89058887-2	chr15	89058387	89059387	+	726.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001002005)	promoter-TSS (NM_001002005)	-839.0	NM_001002005	406218.0	Mm.483059	NM_001002005	ENSMUSG00000058441	Panx2	-	pannexin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72217016-1	chr6	72216516	72217516	+	726.0	f0_balb.idr	intron (NM_153778, intron 2 of 2)	intron (NM_153778, intron 2 of 2)	18561.0	NM_153778	71093.0	Mm.87449	NM_153778	ENSMUSG00000037621	Atoh8	4933425C05Rik|Hath6|Math6|bHLHa21|okadin	atonal bHLH transcription factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34886656-2	chr18	34886156	34887156	+	726.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	25449.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167997982-2	chr2	167997482	167998482	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080708, intron 3 of 21)	intron (NM_001080708, intron 3 of 21)	12611.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-103757120-2	chr5	103756620	103757620	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080798, intron 1 of 19)	intron (NM_001080798, intron 1 of 19)	2547.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147418111-1	chr5	147417611	147418611	+	726.0	f1_balb.idr	promoter-TSS (NR_033625)	promoter-TSS (NR_033625)	-509.0	NR_033625	100039805.0	Mm.394705	NR_033625	ENSMUSG00000106820	D5Ertd605e	Gm2433	DNA segment, Chr 5, ERATO Doi 605, expressed	ncRNA	0.5	7.5	0.5	8.5	8.0	0.5
Merged-chr19-46608162-2	chr19	46607662	46608662	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177812, intron 2 of 4)	intron (NM_001177812, intron 2 of 4)	9056.0	NM_146099	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	31.5	70.0	37.0	5.0	27.0	11.0
Merged-chr11-69583177-2	chr11	69582677	69583677	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127233, intron 1 of 10)	B1_Mur4|SINE|Alu	2818.0	NM_001127233	22059.0	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55812689-3	chr16	55812163	55813163	+	726.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001159394, exon 12 of 12)	3' UTR (NM_001159394, exon 12 of 12)	9475.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11389199-2	chr4	11388699	11389699	+	726.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-2416.0	NM_194055	207920.0	Mm.387719	NM_194055	ENSMUSG00000040728	Esrp1	2210008M09Rik|A630065D16|BC031468|Rbm35a	epithelial splicing regulatory protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-47015417-1	chr4	47014917	47015917	+	726.0	f1_c57bl6.idr	TTS (NM_001356426)	TTS (NM_001356426)	-23703.0	NM_001081141	242425.0	Mm.101909	NM_001081141	ENSMUSG00000039809	Gabbr2	GABABR2|Gb2|Gm425|Gpr51	gamma-aminobutyric acid (GABA) B receptor, 2	protein-coding	1.5	7.5	0.0	3.0	3.0	4.5
Merged-chr7-109169548-2	chr7	109169048	109170048	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302205, intron 1 of 3)	CpG	964.0	NM_001302206	109594.0	Mm.360145	NM_057173	ENSMUSG00000036111	Lmo1	Rbtn-1|Rbtn1|Ttg1	LIM domain only 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165324172-2	chr2	165323672	165324672	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080287, intron 1 of 20)	intron (NM_080287, intron 1 of 20)	2307.0	NM_080287	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	6.0	3.0	1.0	0.0	3.0	3.0
Merged-chr6-89360880-2	chr6	89360380	89361380	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008881, intron 1 of 31)	intron (NM_008881, intron 1 of 31)	1733.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114626634-2	chr5	114626134	114627134	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022017, intron 13 of 15)	intron (NM_022017, intron 13 of 15)	31787.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103205859-2	chr3	103205359	103206359	+	726.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34204.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-93189535-1	chr13	93189035	93190035	+	726.0	f1_c57bl6.idr	intron (NR_154997, intron 1 of 15)	PB1D10|SINE|Alu	2882.0	NM_001361536	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	30.5	139.5	103.0	35.0	115.0	86.5
Merged-chr9-47645222-2	chr9	47644722	47645722	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	114870.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	37.0	76.0	35.5	27.0	49.0	63.5
Merged-chr13-113610347-3	chr13	113609833	113610833	+	726.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	MTEa|LTR|ERVL-MaLR	8231.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99044004-1	chr7	99043504	99044504	+	726.0	f1_c57bl6.idr	intron (NM_178635, intron 6 of 14)	L1MC4|LINE|L1	97140.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	22.5	20.5	21.0	0.0	15.0	15.5
Merged-chr6-90668412-2	chr6	90667912	90668912	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356440, intron 11 of 13)	intron (NM_001356440, intron 11 of 13)	48117.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100671019-3	chr13	100670595	100671595	+	726.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168386, intron 1 of 9)	intron (NM_001168386, intron 1 of 9)	1614.0	NM_001168386	76041.0	Mm.23977	NM_183115	ENSMUSG00000048924	Ccdc125	5830436D01Rik|AL023012	coiled-coil domain containing 125	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97993353-2	chr3	97992853	97993853	+	726.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20185.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73717482-2	chr12	73716982	73717982	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 9 of 13)	intron (NM_008856, intron 9 of 13)	132686.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120536085-2	chr5	120535592	120536592	+	726.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145853, exon 28 of 28)	3' UTR (NM_145853, exon 28 of 28)	24900.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0.0	0.5	0.5	0.0	0.0	0.0
Merged-chr11-100376116-2	chr11	100375616	100376616	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010593, intron 9 of 13)	ID_B1|SINE|B4	-19975.0	NM_010404	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0.5	0.0	1.5	3.0	0.0	1.5
Merged-chr9-120583464-2	chr9	120582964	120583964	+	726.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	6133.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36742059-3	chr5	36741532	36742532	+	726.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6647.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87607825-4	chr1	87607303	87608303	+	725.9940190000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12509.0	NM_001110193	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-81581396-3	chr17	81580871	81581871	+	725.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	L2|LINE|L2	157016.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-45919150-4	chr1	45918681	45919681	+	725.958313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016917, intron 3 of 7)	intron (NM_016917, intron 3 of 7)	6413.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-78059934-3	chr2	78059424	78060424	+	725.955566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_108098, intron 1 of 6)	intron (NR_108098, intron 1 of 6)	8747.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11026014-3	chr16	11025502	11026502	+	725.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17104.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-109555117-2	chr5	109554617	109555617	+	725.924988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310694, intron 7 of 7)	G-rich|Low_complexity|Low_complexity	3876.0	NM_016715	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	0.0	0.0	1.5	0.0	3.0	0.0
Merged-chr7-19120578-2	chr7	19120078	19121078	+	725.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175530, intron 1 of 1)	intron (NM_175530, intron 1 of 1)	719.0	NM_175530	243867.0	Mm.230830	NM_175530	ENSMUSG00000050428	Fbxo46	20D7-FC4|4932704E22Rik|Fbxo34l	F-box protein 46	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-115704442-4	chr3	115703942	115704942	+	725.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10613.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	1.5	11.0	6.0	5.0	1.0	4.5
Merged-chr3-105865231-3	chr3	105864750	105865750	+	725.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER58A|DNA|hAT-Charlie	-5608.0	NM_027025	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	5.5	0.5	1.5	0.0	8.0	5.0
Merged-chr11-114895169-2	chr11	114894669	114895669	+	725.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_170758, intron 3 of 6)	intron (NM_170758, intron 3 of 6)	5128.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32363706-2	chr12	32363206	32364206	+	725.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-15083.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	0.0	4.0	0.0	0.0	4.0	0.0
Merged-chr9-47587965-2	chr9	47587482	47588482	+	725.833374	f0_balb.idr|f1_balb.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	57630.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	4.0	52.0	23.0	34.5	152.0	88.0
Merged-chr4-107164235-4	chr4	107163726	107164726	+	725.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025617, intron 3 of 4)	intron (NM_025617, intron 3 of 4)	14140.0	NM_025617	66526.0	Mm.246956	NM_025617	ENSMUSG00000028619	Tceanc2	2210010B22Rik|2210012G02Rik|6330404A07Rik|AU015593|Tdeanc2	transcription elongation factor A (SII) N-terminal and central domain containing 2	protein-coding	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150213298-2	chr4	150212805	150213805	+	725.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19|LTR|ERVK	-12170.0	NM_009802	12353.0	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	77.5	193.5	127.0	51.5	122.5	84.0
Merged-chr1-171160741-3	chr1	171160309	171161309	+	725.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008623, exon 8 of 8)	3' UTR (NM_008623, exon 8 of 8)	5291.0	NM_001315500	17528.0	Mm.9986	NM_008623	ENSMUSG00000056569	Mpz	Mpp|P-zero|P0	myelin protein zero	protein-coding	5.5	0.0	0.0	3.0	2.0	0.0
Merged-chr10-80808720-2	chr10	80808220	80809220	+	725.799988	f1_balb.idr|f1_c57bl6.idr	exon (NM_028001, exon 7 of 7)	exon (NM_028001, exon 7 of 7)	3472.0	NM_007445	11705.0	Mm.376094	NM_007445	ENSMUSG00000035262	Amh	MIS	anti-Mullerian hormone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23842490-3	chr18	23841961	23842961	+	725.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 3 of 7)	intron (NM_001162941, intron 3 of 7)	38491.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-108628484-3	chr5	108628021	108629021	+	725.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359923, intron 1 of 22)	intron (NM_001359923, intron 1 of 22)	1256.0	NM_001359924	231580.0	Mm.276647	NM_153569	ENSMUSG00000062234	Gak	D130045N16Rik	cyclin G associated kinase	protein-coding	6.0	23.5	20.0	14.0	43.5	29.5
Merged-chr16-42165124-4	chr16	42164620	42165620	+	725.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361282, intron 9 of 10)	intron (NM_001361282, intron 9 of 10)	138349.0	NR_105858	102466172.0		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60883119-4	chr2	60882607	60883607	+	725.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-1669.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-56524896-3	chr1	56524396	56525396	+	725.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112555.0	NM_027661	71066.0	Mm.152656	NM_027661	ENSMUSG00000045336	Hsfy2	4933413G11Rik|Hspy2l	heat shock transcription factor, Y-linked 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-97436040-3	chr13	97435563	97436563	+	725.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110432, intron 1 of 1)	intron (NR_110432, intron 1 of 1)	1093.0	NR_110432	100039691.0	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99018270-3	chr15	99017782	99018782	+	725.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11609.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20378555-3	chr14	20378060	20379060	+	725.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024512, intron 11 of 13)	intron (NM_001024512, intron 11 of 13)	10350.0	NM_134081	108671.0	Mm.2871	NM_134081	ENSMUSG00000021811	Dnajc9	5330419I01Rik|AU020082	DnaJ heat shock protein family (Hsp40) member C9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75371660-3	chr18	75371158	75372158	+	725.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042660, intron 2 of 3)	intron (NM_001042660, intron 2 of 3)	4293.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-40296626-3	chr8	40296125	40297125	+	725.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9672.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	1.0	4.0	2.0	0.0	1.5	2.0
Merged-chr8-110481190-1	chr8	110480690	110481690	+	725.666687	f0_c57.idr	intron (NM_172916, intron 24 of 86)	LTR16A1|LTR|ERVL	21166.0	NR_105058	100861869.0	Mm.84499	NR_105058		Gm21283	-	predicted gene, 21283	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-9104969-2	chr5	9104469	9105469	+	725.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081029, intron 2 of 4)	ID4|SINE|ID	4232.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89314676-2	chr15	89314176	89315176	+	725.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081030, intron 1 of 39)	CpG	635.0	NM_001081030	77980.0	Mm.35483	NM_030019	ENSMUSG00000036529	Sbf1	2610510A08Rik|B230113C15Rik|Mtmr5|mKIAA3020	SET binding factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88411922-2	chr3	88411422	88412422	+	725.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178696, exon 4 of 4)	3' UTR (NM_178696, exon 4 of 4)	-1525.0	NM_025928	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-58232527-2	chr10	58232027	58233027	+	725.625	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081954, exon 1 of 1)	exon (NM_001081954, exon 1 of 1)	148.0	NM_001081954	664783.0	Mm.482575	NM_001081954		Dux	AW822073|Dux4|Duxbl|EG664783	double homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66112968-2	chr5	66112488	66113488	+	725.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-14809.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	31.5	82.5	50.5	21.5	76.0	52.5
Merged-chr2-167641589-4	chr2	167641094	167642094	+	725.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9589.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65938259-6	chr3	65937700	65938700	+	725.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20049.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68136101-3	chr10	68135575	68136575	+	725.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 4 of 9)	intron (NM_023598, intron 4 of 9)	142651.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	77.0	120.0	106.0	100.0	115.0	118.0
Merged-chr2-70669354-2	chr2	70668854	70669854	+	725.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027352, intron 1 of 9)	intron (NM_027352, intron 1 of 9)	7845.0	NM_027352	70231.0	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-54684520-3	chr1	54684068	54685068	+	725.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 16 of 27)	intron (NM_001081433, intron 16 of 27)	-126884.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	0.0	1.5	2.0	2.5	0.0	1.0
Merged-chr16-90676704-3	chr16	90676163	90677163	+	725.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50708.0	NM_025642	66578.0	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-49321357-5	chr6	49320767	49321767	+	725.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311112, intron 1 of 3)	intron (NM_001311112, intron 1 of 3)	1993.0	NM_001311112	57895.0	Mm.32416	NM_175098	ENSMUSG00000050786	Ccdc126	6330407D12Rik|AA675040|AI465320|AL022711	coiled-coil domain containing 126	protein-coding	19.5	11.5	16.5	1.5	4.0	2.0
Merged-chr8-68233169-3	chr8	68232660	68233660	+	725.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43368.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	0.0	18.5	6.5	4.5	2.0	13.5
Merged-chr2-27328369-3	chr2	27327873	27328873	+	725.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 2 of 29)	intron (NR_133905, intron 2 of 29)	-81070.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-186932121-3	chr1	186931634	186932634	+	725.527771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR51B_Mm|LTR|ERVK?	-35282.0	NM_033077	110957.0	Mm.108054	NM_033077	ENSMUSG00000039224	D1Pas1	Pl10	DNA segment, Chr 1, Pasteur Institute 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80383360-2	chr10	80382860	80383860	+	725.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198615, intron 1 of 1)	intron (NM_198615, intron 1 of 1)	4291.0	NM_198615	237400.0	Mm.268389	NM_198615	ENSMUSG00000048696	Mex3d	BC059858|Rkhd1	mex3 RNA binding family member D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5780388-2	chr19	5779888	5780888	+	725.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-8969.0	NR_155264	78891.0	Mm.276063	NM_023912	ENSMUSG00000024941	Scyl1	2810011O19Rik|C85140|Ntkl|mdf|mfd|p105	SCY1-like 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91931188-2	chr2	91930688	91931688	+	725.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001291483, exon 3 of 4)	exon (NM_001291483, exon 3 of 4)	514.0	NM_001291481	17242.0	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	2.5	0.0	0.0	0.0	0.0	0.5
Merged-chr7-101910296-2	chr7	101909796	101910796	+	725.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025605, intron 3 of 4)	intron (NM_025605, intron 3 of 4)	-3937.0	NM_001081679	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116122443-2	chr3	116121943	116122943	+	725.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011693, intron 4 of 8)	intron (NM_011693, intron 4 of 8)	7245.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	8.0	11.5	2.5	7.0	11.5	15.5
Merged-chr10-128922681-2	chr10	128922181	128923181	+	725.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_015740, exon 2 of 4)	exon (NM_015740, exon 2 of 4)	843.0	NM_015740	14533.0	Mm.30118	NM_015740	ENSMUSG00000090247	Bloc1s1	AI839753|BLOS1|Gcn5l1	biogenesis of lysosomal organelles complex-1, subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41850651-2	chr13	41850151	41851151	+	725.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3035.0	NM_001145875	109254.0	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94181177-2	chr8	94180677	94181677	+	725.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013602)	TTS (NM_013602)	2088.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71615071-2	chr17	71614571	71615571	+	725.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-1144.0	NM_175639	72515.0	Mm.257762	NM_175639	ENSMUSG00000041057	Wdr43	2610318G08Rik|AU020887|AV024208|Wrd43|mKIAA0007	WD repeat domain 43	protein-coding	0.0	1.5	0.0	1.0	0.0	2.0
Merged-chr13-111942958-2	chr13	111942458	111943458	+	725.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	75022.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	1.5	0.0	0.0	1.5	0.0	0.0
Merged-chr15-6509049-1	chr15	6508549	6509549	+	725.5	f0_balb.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	63716.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135604809-2	chr3	135604309	135605309	+	725.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 15 of 24)	intron (NM_008689, intron 15 of 24)	86738.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	5.0	1.5	0.5	0.0	0.0	2.0
Merged-chr17-62220071-2	chr17	62219571	62220571	+	725.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	661246.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30556039-2	chr7	30555539	30556539	+	725.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001012401)	TTS (NM_001012401)	2737.0	NM_001012401	243912.0	Mm.34885	NM_001012401	ENSMUSG00000036854	Hspb6	AA387366|Gm479|Hsp20	heat shock protein, alpha-crystallin-related, B6	protein-coding	0.5	2.0	0.0	2.0	8.0	0.5
Merged-chr7-34339195-2	chr7	34338695	34339695	+	725.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER68|LTR|ERVL	50510.0	NM_001360654	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69867391-2	chr8	69866892	69867892	+	725.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151668, intron 3 of 5)	intron (NR_151668, intron 3 of 5)	20000.0	NM_026818	68709.0	Mm.334584	NM_026818	ENSMUSG00000044006	Cilp2	1110031K21Rik|AA407300|CLIP-2	cartilage intermediate layer protein 2	protein-coding	19.5	45.5	22.5	5.5	21.5	3.0
Merged-chr8-70704082-2	chr8	70703626	70704626	+	725.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6387.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	3.0	9.5	1.0	1.5	6.0	0.0
Merged-chr4-53356690-2	chr4	53356190	53357190	+	725.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-83723.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	6.0	4.0	3.5	0.0	4.0	3.0
Merged-chr7-126201008-2	chr7	126200508	126201508	+	725.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311143)	promoter-TSS (NM_001311143)	-507.0	NM_028816	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-9575181-2	chr10	9574681	9575681	+	725.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100027.0	NM_177271	320825.0	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-46881195-3	chr7	46880694	46881694	+	725.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19931.0	NM_013580	16833.0	Mm.16563	NM_013580	ENSMUSG00000030851	Ldhc	LDH-C4|Ldh-3|Ldh-x|Ldh3|Ldhc4	lactate dehydrogenase C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120566816-2	chr8	120566316	120567316	+	725.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 4 of 15)	intron (NM_001145896, intron 4 of 15)	22259.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46041416-2	chr19	46040929	46041929	+	725.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113408, intron 1 of 10)	ID_B1|SINE|B4	-1808.0	NM_010697	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	9.0	11.5	2.0	0.0	12.0	5.0
Merged-chr3-130761601-2	chr3	130761101	130762101	+	725.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31203.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-20952031-2	chr1	20951531	20952531	+	725.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027974, intron 1 of 10)	intron (NM_027974, intron 1 of 10)	405.0	NM_027974	71877.0	Mm.29178	NM_027974	ENSMUSG00000041809	Efhc1	1700029F22Rik|mRib72-1|myoclonin1	EF-hand domain (C-terminal) containing 1	protein-coding	0.0	0.0	0.0	1.5	4.5	3.5
Merged-chr5-125267224-2	chr5	125266724	125267724	+	725.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73870.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122137269-2	chr7	122136769	122137769	+	725.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021608, intron 3 of 5)	intron (NM_021608, intron 3 of 5)	4228.0	NM_021608	59288.0	Mm.478285	NM_021608	ENSMUSG00000030868	Dctn5	4930427E12Rik|C78178|b2b315Clo	dynactin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35159730-2	chr17	35159230	35160230	+	725.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199044, intron 11 of 30)	intron (NM_001199044, intron 11 of 30)	5147.0	NM_001199044	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0.0	0.0	0.0	0.0	4.5	0.0
Merged-chr11-82924089-2	chr11	82923589	82924589	+	725.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178680, intron 9 of 19)	B2_Mm1t|SINE|B2	12836.0	NM_178680	217012.0	Mm.295205	NM_178680	ENSMUSG00000018845	Unc45b	AA445617|Cmya4|D230041A13Rik|Unc45	unc-45 myosin chaperone B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-123429501-2	chr7	123429001	123430001	+	725.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355050, intron 6 of 6)	intron (NM_001355050, intron 6 of 6)	21684.0	NM_001355050	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139611751-2	chr4	139611233	139612233	+	725.5	f0_balb.idr|f1_balb.idr	intron (NM_001205173, intron 5 of 8)	intron (NM_001205173, intron 5 of 8)	-11161.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	2.5	5.0	2.0	10.0	2.0	0.0
Merged-chr1-188569232-2	chr1	188568732	188569732	+	725.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021408, intron 29 of 70)	B4|SINE|B4	306394.0	NM_021408	22283.0	Mm.331238	NM_021408	ENSMUSG00000026609	Ush2a	A930011D15Rik|A930037M10Rik|Gm676|Gm983|Mush2a|Ushrn	usherin	protein-coding	4.5	0.0	0.0	0.0	2.0	0.0
Merged-chr13-41015815-2	chr13	41015315	41016315	+	725.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025387)	promoter-TSS (NM_025387)	-435.0	NM_025387	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155085005-2	chr4	155084505	155085505	+	725.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026395, intron 1 of 6)	L2a|LINE|L2	1292.0	NM_026395	67830.0	Mm.241604	NM_026395	ENSMUSG00000029048	Rer1	1110060F11Rik|5830454N22Rik|AU043380	retention in endoplasmic reticulum sorting receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37317392-2	chr10	37316892	37317892	+	725.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16B1|LTR|ERVL	-178466.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-52081139-2	chr11	52080639	52081639	+	725.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166654, intron 13 of 13)	intron (NM_001166654, intron 13 of 13)	-17685.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120108815-2	chr8	120108315	120109315	+	725.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5337.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	31.0	46.5	28.0	9.0	22.0	9.0
Merged-chr8-51031118-2	chr8	51030618	51031618	+	725.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	663006.0	NR_046067	100039954.0	Mm.400419	NR_046067	ENSMUSG00000110281	Gm2516	-	predicted gene 2516	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8717922-2	chr11	8717422	8718422	+	725.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53387.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180975711-2	chr1	180975211	180976211	+	725.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_144794)	TTS (NM_144794)	33193.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80483200-2	chr18	80482700	80483700	+	725.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-13533.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43886276-2	chr5	43885776	43886776	+	725.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	B4A|SINE|B4	17467.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	27.5	36.0	17.0	31.5	46.5	18.5
Merged-chr17-46161854-4	chr17	46161351	46162351	+	725.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357745)	promoter-TSS (NM_001357745)	-213.0	NM_001357745	56055.0	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60826228-4	chr13	60825738	60826738	+	725.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23394.0	NM_027344	70202.0	Mm.158337	NM_027344	ENSMUSG00000056728	Ctsll3	2310051M13Rik	cathepsin L-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110101319-4	chr5	110100842	110101842	+	725.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281812, intron 2 of 6)	CpG	783.0	NM_001281812	403178.0	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52486786-3	chr6	52486308	52487308	+	725.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5643.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-70021834-3	chr10	70021356	70022356	+	725.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170729, intron 40 of 40)	intron (NM_170729, intron 40 of 40)	-75265.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64771498-3	chr17	64771009	64772009	+	725.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4398.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101321501-4	chr7	101320982	101321982	+	725.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019990, intron 1 of 6)	CpG	369.0	NM_019990	56018.0	Mm.28896	NM_019990	ENSMUSG00000030688	Stard10	AV048538|CGI-52|NY-C0-28|PC-TP2|PCTP2|Pctpl|Sdccag28|SdccagG28|TISP-81	START domain containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73393603-4	chr17	73393123	73394123	+	725.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033444, intron 1 of 22)	intron (NM_001033444, intron 1 of 22)	5673.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99379020-2	chr15	99378520	99379520	+	725.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-8538.0	NM_001310622	22379.0	Mm.29043	NM_011711	ENSMUSG00000023008	Fmnl3	2700073B04Rik|FBP11|Wbp3|mKIAA2014	formin-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103857144-3	chr14	103856670	103857670	+	725.344421	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12694.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-85315769-2	chr15	85315269	85316269	+	725.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20612.0	NM_016843	54138.0	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr11-115999723-2	chr11	115999194	116000194	+	725.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133663, intron 27 of 38)	intron (NM_133663, intron 27 of 38)	-5979.0	NR_152190	100038636.0	Mm.450138	NR_152190		B230344G16Rik	-	RIKEN cDNA B230344G16 gene	ncRNA	0.0	0.0	4.5	0.0	4.5	1.0
Merged-chr4-136052542-3	chr4	136052075	136053075	+	725.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_154592).3	promoter-TSS (NR_154592).3	796.0	NM_025919	67025.0	Mm.276856	NM_025919	ENSMUSG00000059291	Rpl11	2010203J19Rik	ribosomal protein L11	protein-coding	2.0	3.0	2.0	1.0	2.5	6.0
Merged-chr6-39003159-2	chr6	39002659	39003659	+	725.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 5 of 12)	intron (NM_011539, intron 5 of 12)	64427.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25532999-2	chr9	25532499	25533499	+	725.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	51402.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41080519-4	chr13	41080090	41081090	+	725.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145803)	promoter-TSS (NM_001145803)	-884.0	NM_001145802	17152.0	Mm.8149	NM_008547	ENSMUSG00000021363	Mak	A930010O05Rik	male germ cell-associated kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121093038-2	chr11	121092538	121093538	+	725.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11899.0	NM_145373	209588.0	Mm.69553	NM_145373	ENSMUSG00000025165	Sectm1a	BC010462	secreted and transmembrane 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129153956-3	chr6	129153446	129154446	+	725.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-26669.0	NM_053109	93694.0	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	1.0	1.5	0.0	2.5	0.0	2.0
Merged-chr2-145123676-1	chr2	145123176	145124176	+	725.333313	f0_balb.idr	Intergenic	IAPLTR1_Mm|LTR|ERVK	-44099.0	NM_001356497	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87447340-2	chr6	87446840	87447840	+	725.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	18346.0	NM_009756	12154.0	Mm.483321	NM_009756	ENSMUSG00000030046	Bmp10	b2b2711Clo	bone morphogenetic protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43806865-1	chr13	43806365	43807365	+	725.333313	f0_balb.idr	Intergenic	Intergenic	21753.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105346062-2	chr5	105345562	105346562	+	725.333313	f1_balb.idr|f1_c57bl6.idr	intron (NR_132129, intron 1 of 10)	intron (NR_132129, intron 1 of 10)	410.0	NM_001039647	634650.0	Mm.458435	NM_001039647	ENSMUSG00000092021	Gbp11	EG634650|Gm7141	guanylate binding protein 11	protein-coding	3.0	0.0	0.5	2.0	0.5	0.5
Merged-chr15-39362260-4	chr15	39361736	39362736	+	725.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053271, intron 5 of 26)	intron (NM_053271, intron 5 of 26)	163950.0	NM_053271	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80548941-4	chr10	80548438	80549438	+	725.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025852, intron 2 of 14)	intron (NM_025852, intron 2 of 14)	-9814.0	NM_026094	67331.0	Mm.52511	NM_026094	ENSMUSG00000003341	Atp8b3	1700042F02Rik|1700056N23Rik|ATPIK|SAPLT	ATPase, class I, type 8B, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-75400064-4	chr1	75399556	75400556	+	725.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001173477)	promoter-TSS (NM_001173477)	-29.0	NM_001173477	11790.0	Mm.275397	NM_007463	ENSMUSG00000026207	Speg	AW125581|Apeg1|BPEG|D1Bwg1450e|SPEGalpha|SPEGbeta|mKIAA1297	SPEG complex locus	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10880919-3	chr19	10880415	10881415	+	725.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134142, intron 1 of 3)	intron (NM_134142, intron 1 of 3)	828.0	NM_134142	68539.0	Mm.251890	NM_134142	ENSMUSG00000034659	Tmem109	1110006I15Rik|AA958958|C77652	transmembrane protein 109	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144676661-4	chr3	144676219	144677219	+	725.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43616.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	9.5	22.5	13.0	0.5	3.5	2.5
Merged-chr7-27475713-2	chr7	27475158	27476158	+	725.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_133210, intron 1 of 1)	B3|SINE|B2	1818.0	NM_133210	170742.0	Mm.200120	NM_133210	ENSMUSG00000055200	Sertad3	AW124805|D1Mgi51|Rbt1|Sei3	SERTA domain containing 3	protein-coding	7.0	0.0	0.0	4.0	6.0	0.0
Merged-chr12-39200101-3	chr12	39199589	39200589	+	725.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	416378.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	3.5	0.5	5.0	0.0	0.0	2.5
Merged-chr12-102339328-3	chr12	102338834	102339834	+	725.244446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 3 of 9)	MLT1H|LTR|ERVL-MaLR	55693.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	19.5	37.5	16.0	39.0	36.5	47.0
Merged-chr16-26035192-3	chr16	26034696	26035696	+	725.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173379, intron 1 of 14)	intron (NM_173379, intron 1 of 14)	70588.0	NM_173379	210530.0	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-65589024-3	chr6	65588506	65589506	+	725.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1392.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33833918-4	chr16	33833431	33834431	+	725.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 1 of 14)	intron (NM_001145884, intron 1 of 14)	4266.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46171944-2	chr17	46171439	46172439	+	725.208374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_030715)	TTS (NM_030715)	9875.0	NM_001357745	56055.0	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	0.0	0.0	0.5	1.5	0.0	0.0
Merged-chr11-115077615-2	chr11	115077115	115078115	+	725.200012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13816.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134095875-3	chr6	134095350	134096350	+	725.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	60150.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	2.5	7.5	3.5	9.5	16.0	0.0
Merged-chr2-32380271-3	chr2	32379747	32380747	+	725.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198001, intron 1 of 1)	intron (NM_198001, intron 1 of 1)	1668.0	NM_198001	73737.0	Mm.27608	NM_198001	ENSMUSG00000039195	1110008P14Rik	C79326	RIKEN cDNA 1110008P14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-34054946-3	chr15	34054452	34055452	+	725.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-27767.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	24.0	5.0	10.5	14.0	17.0	20.5
Merged-chr7-140063311-3	chr7	140062816	140063816	+	725.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14228.0	NM_001347609	17703.0	Mm.4816	NM_010836	ENSMUSG00000025469	Msx3	AI323377	msh homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-80723422-3	chr1	80722914	80723914	+	725.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	35139.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52262377-3	chr2	52261865	52262865	+	725.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010889, intron 54 of 156)	MER20|DNA|hAT-Charlie	-28637.0	NR_040620	78049.0	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-46783772-2	chr7	46783272	46784272	+	725.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005247, intron 6 of 22)	intron (NM_001005247, intron 6 of 22)	12109.0	NM_001005248	246694.0	Mm.379442	NM_178742	ENSMUSG00000014418	Hps5	AI646796|AL022647|C85120|haze|hz|maroon|mr|ru-2|ru2	HPS5, biogenesis of lysosomal organelles complex 2 subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148468271-2	chr2	148467771	148468771	+	725.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24736.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-118429580-2	chr4	118429080	118430080	+	725.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039176)	promoter-TSS (NM_001039176)	-121.0	NM_001039176	54325.0	Mm.282096	NM_019422	ENSMUSG00000006390	Elovl1	AA407424|BB151133|Ssc1	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52567024-2	chr13	52566524	52567524	+	725.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6201.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127589010-2	chr10	127588492	127589492	+	725.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 13 of 88)	intron (NM_008512, intron 13 of 88)	32156.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	5.0	15.0	5.0	4.0	14.5	6.5
Merged-chr17-34334919-2	chr17	34334421	34335421	+	725.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033978, intron 3 of 4)	intron (NM_001033978, intron 3 of 4)	9246.0	NM_001033978	381091.0	Mm.139204	NM_001033978	ENSMUSG00000067341	H2-Eb2	A130038H09Rik|H-2Eb2|Ia-5|Ia5|Iebeta2	histocompatibility 2, class II antigen E beta2	protein-coding	7.5	2.5	11.5	21.5	12.5	5.0
Merged-chr6-50044376-2	chr6	50043876	50044876	+	725.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65865.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34753458-3	chr19	34752951	34753951	+	725.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6340.0	NM_172838	240638.0	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	6.5	32.5	13.5	4.0	12.5	17.5
Merged-chr10-42161898-3	chr10	42161406	42162406	+	725.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR10B2|LTR|ERVK	114836.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32300739-4	chr11	32300235	32301235	+	725.108337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175000, exon 3 of 3)	exon (NM_175000, exon 3 of 3)	666.0	NM_175000	216635.0	Mm.338482	NM_175000	ENSMUSG00000020295	Hbq1a	A230090E05Rik|Gm876|Hbq1|Hbqt2	hemoglobin, theta 1A	protein-coding	0.0	2.5	0.0	2.0	0.0	0.0
Merged-chr2-155363624-2	chr2	155363121	155364121	+	725.083374	f0_balb.idr|f1_c57bl6.idr	Intergenic	(TTC)n|Simple_repeat|Simple_repeat	-6197.0	NM_001004721	228812.0	Mm.5434	NM_001004721	ENSMUSG00000038383	Pigu	5430426F17Rik|BC028278|Cdc91l1	phosphatidylinositol glycan anchor biosynthesis, class U	protein-coding	18.0	15.5	30.5	13.5	18.5	13.5
Merged-chr18-77949734-4	chr18	77949233	77950233	+	725.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195633, intron 2 of 43)	intron (NM_001195633, intron 2 of 43)	11266.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37177188-3	chr19	37176667	37177667	+	725.06665	f1_balb.idr|f1_c57bl6.idr	intron (NR_045329, intron 2 of 2)	intron (NR_045329, intron 2 of 2)	-1104.0	NM_001290826	208922.0	Mm.391176	NM_198300	ENSMUSG00000039652	Cpeb3	4831444O18Rik|CPE-BP3|mKIAA0940	cytoplasmic polyadenylation element binding protein 3	protein-coding	0.0	2.0	0.5	0.0	7.0	2.0
Merged-chr17-33952166-1	chr17	33951666	33952666	+	725.0	f1_c57bl6.idr	promoter-TSS (NM_019420)	promoter-TSS (NM_019420)	-678.0	NM_019420	54218.0	Mm.11132	NM_019420	ENSMUSG00000067370	B3galt4	Gal-T2|Galt2	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4	protein-coding	21.0	36.5	32.5	21.5	32.0	32.0
Merged-chr8-117051643-2	chr8	117051143	117052143	+	725.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029686, exon 15 of 43)	exon (NM_029686, exon 15 of 43)	30806.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-83004554-2	chr10	83004059	83005059	+	725.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021439, intron 1 of 2)	intron (NM_021439, intron 1 of 2)	19062.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61485887-1	chr18	61485387	61486387	+	725.0	f1_balb.idr	Intergenic	L2b|LINE|L2	-1280.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	0.0	2.0	12.5	14.0	13.5	6.5
Merged-chr12-35298911-1	chr12	35298411	35299411	+	725.0	f0_balb.idr	Intergenic	B3A|SINE|B2	-104014.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	2.5	1.5	5.0	3.0	3.0	4.0
Merged-chr4-154881500-1	chr4	154881000	154882000	+	725.0	f0_balb.idr	intron (NM_013783, intron 2 of 23)	intron (NM_013783, intron 2 of 23)	-9497.0	NR_154548	102634887.0	Mm.72944	NR_154548		Gm13112	-	predicted gene 13112	ncRNA	3.5	4.0	4.5	3.0	9.0	4.0
Merged-chr18-34853795-2	chr18	34853295	34854295	+	725.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7412.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	2.0	0.0	11.0	2.0	0.0	10.5
Merged-chr11-53375852-2	chr11	53375352	53376352	+	725.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033565, intron 4 of 20)	intron (NM_033565, intron 4 of 20)	25085.0	NM_033565	93736.0	Mm.395281	NM_033565	ENSMUSG00000049470	Aff4	AF5Q31|Alf4|Laf4l|MCEF	AF4/FMR2 family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52254402-2	chr13	52253902	52254902	+	725.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	157661.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21925387-2	chr9	21924887	21925887	+	725.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045606, intron 3 of 4)	B1_Mur4|SINE|Alu	1901.0	NM_001253869	235043.0	Mm.253329	NM_178577	ENSMUSG00000040883	Tmem205	-	transmembrane protein 205	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71191259-2	chr17	71190759	71191759	+	725.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	MTE2a|LTR|ERVL-MaLR	7281.0	NM_022882	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	20.0	45.0	30.0	17.5	58.5	24.0
Merged-chr1-85234614-1	chr1	85234114	85235114	+	725.0	f1_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	35003.0	NM_001081746	665378.0	Mm.440912	NM_001081746		Gm7609	EG665378	predicted pseudogene 7609	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-72260268-2	chr2	72259768	72260768	+	725.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25369.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47332809-1	chr17	47332309	47333309	+	725.0	f1_c57bl6.idr	intron (NM_001097623, intron 14 of 19)	B2_Mm2|SINE|B2	-36078.0	NM_001146212	64657.0	Mm.216250	NM_183086	ENSMUSG00000034729	Mrps10	1110038B19Rik|AW743084|Rpms10	mitochondrial ribosomal protein S10	protein-coding	1.5	4.5	0.0	1.0	3.0	2.5
Merged-chr10-100520859-2	chr10	100520359	100521359	+	725.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146009, intron 24 of 52)	intron (NM_146009, intron 24 of 52)	32570.0	NM_146009	216274.0	Mm.229114	NM_146009	ENSMUSG00000019971	Cep290	BC004690|Nphp6|b2b1454Clo|b2b1752Clo	centrosomal protein 290	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115742722-1	chr11	115742222	115743222	+	725.0	f1_c57bl6.idr	Intergenic	Intergenic	-22711.0	NM_028014	71947.0	Mm.23168	NM_028014	ENSMUSG00000020747	Tmem94	2310067B10Rik|Kiaa0195|mKIAA0195	transmembrane protein 94	protein-coding	6.5	46.5	40.5	29.0	36.5	13.5
Merged-chr8-83805859-2	chr8	83805359	83806359	+	725.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64548.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	0.0	20.0	3.0	0.0	3.0	2.0
Merged-chr7-46754563-2	chr7	46754063	46755063	+	725.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011314)	TTS (NM_011314)	2730.0	NM_001357491	20209.0	Mm.200941	NM_011314	ENSMUSG00000057465	Saa2	AW111173|Saa-2|Saa1	serum amyloid A 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24712737-2	chr10	24712237	24713237	+	725.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008813)	promoter-TSS (NM_008813)	-578.0	NM_008813	18605.0	Mm.27254	NM_008813	ENSMUSG00000037370	Enpp1	4833416E15Rik|AI428932|C76301|CD203c|E-NPP 1|E-NPP1|Ly-41|M6S1|NPP1|Npps|PC-1|Pca|Pca-1|Pdnp1|ttw|twy	ectonucleotide pyrophosphatase/phosphodiesterase 1	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr9-96404781-2	chr9	96404281	96405281	+	725.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40350.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0.0	2.0	0.0	0.0	1.0	0.0
Merged-chr17-86446861-1	chr17	86446361	86447361	+	725.0	f1_balb.idr	intron (NM_011104, intron 2 of 14)	intron (NM_011104, intron 2 of 14)	-159683.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	9.0	1.0	3.5	8.5	23.0	20.5
Merged-chr17-80062922-1	chr17	80062422	80063422	+	725.0	f0_balb.idr	promoter-TSS (NM_144802)	promoter-TSS (NM_144802)	-654.0	NM_144802	72692.0	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-21993853-2	chr3	21993353	21994353	+	725.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82799.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-71986330-3	chr1	71985796	71986796	+	725.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040454, intron 1 of 2)	intron (NR_040454, intron 1 of 2)	18899.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98120020-2	chr7	98119520	98120520	+	725.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256081)	promoter-TSS (NM_001256081)	-527.0	NM_008663	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	0.0	0.5	0.5	1.0	0.0	0.0
Merged-chr4-93143419-2	chr4	93142919	93143919	+	725.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	192092.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-104033245-1	chr5	104032745	104033745	+	725.0	f0_balb.idr	Intergenic	Intergenic	-11449.0	NM_053262	114664.0	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21738112-2	chr5	21737612	21738612	+	725.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028431, intron 1 of 12)	(CAGA)n|Simple_repeat|Simple_repeat	952.0	NM_028431	73078.0	Mm.301655	NM_028431	ENSMUSG00000029017	Pmpcb	3110004O18Rik|MPP11|MPPB|MPPP52	peptidase (mitochondrial processing) beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-102226384-2	chr6	102225884	102226884	+	725.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008779, intron 12 of 21)	RMER1B|Other|Other	-39716.0	NR_131018	75893.0	Mm.2968	NR_131017	ENSMUSG00000107563	4930587E11Rik	4930523E13Rik|Gm44188	RIKEN cDNA 4930587E11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-9529886-2	chr15	9529386	9530386	+	725.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008372)	promoter-TSS (NM_008372)	-10.0	NM_008372	16197.0	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16893613-2	chr7	16893113	16894113	+	725.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010320, intron 2 of 3)	intron (NM_010320, intron 2 of 3)	1827.0	NM_010320	14709.0	Mm.103770	NM_010320	ENSMUSG00000063594	Gng8	G(y)8	guanine nucleotide binding protein (G protein), gamma 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59943017-2	chr10	59942517	59943517	+	725.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8753.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79519537-2	chr11	79519037	79520037	+	725.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077496, intron 1 of 1)	intron (NM_001077496, intron 1 of 1)	4225.0	NM_001077496	216984.0	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	48.5	72.5	66.5	30.0	85.0	64.5
Merged-chr5-125466666-2	chr5	125466166	125467166	+	725.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-9207.0	NM_030210	78894.0	Mm.431573	NM_030210	ENSMUSG00000029482	Aacs	2210408B16Rik|SUR5	acetoacetyl-CoA synthetase	protein-coding	0.0	7.0	0.0	0.0	7.0	0.0
Merged-chr2-127476475-1	chr2	127475975	127476975	+	725.0	f1_balb.idr	intron (NM_019789, intron 2 of 8)	intron (NM_019789, intron 2 of 8)	6024.0	NM_001111331	56461.0	Mm.315292	NM_019789	ENSMUSG00000079056	Kcnip3	4933407H12Rik|AI413860|Csen|DREAM|KChIP3|R74849	Kv channel interacting protein 3, calsenilin	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr11-3178443-1	chr11	3177943	3178943	+	725.0	f0_balb.idr	intron (NM_030207, intron 5 of 32)	B2_Mm2|SINE|B2	15020.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-18362736-2	chr18	18362236	18363236	+	725.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-781746.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-43644039-3	chr6	43643544	43644544	+	725.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 2 of 8)	intron (NM_013861, intron 2 of 8)	22234.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60451278-2	chr10	60450778	60451778	+	725.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 14 of 68)	intron (NM_001252635, intron 14 of 68)	51552.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118016397-2	chr11	118015897	118016897	+	725.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151726, intron 8 of 9)	intron (NR_151726, intron 8 of 9)	14127.0	NR_105898	102466768.0		NR_105898	ENSMUSG00000098958	Mir6933	Gm27856|mmu-mir-6933	microRNA 6933	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-62893207-4	chr5	62892700	62893700	+	725.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79377.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	3.0	5.0	3.0	4.5	1.0	0.5
Merged-chr9-14774203-2	chr9	14773703	14774703	+	725.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3173.0	NM_029306	69325.0	Mm.440453	NM_029306	ENSMUSG00000031927	1700012B09Rik	1700007P19Rik	RIKEN cDNA 1700012B09 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79018533-1	chr12	79018033	79019033	+	725.0	f1_balb.idr	Intergenic	Intergenic	-10630.0	NM_181073	211945.0	Mm.478321	NM_181073	ENSMUSG00000060716	Plekhh1	AV308913|C77772|D630024D12Rik|mKIAA1200	pleckstrin homology domain containing, family H (with MyTH4 domain) member 1	protein-coding	10.5	14.5	12.0	25.5	33.5	50.0
Merged-chr2-59166773-2	chr2	59166273	59167273	+	725.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	B1_Mur2|SINE|Alu	5923.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-146454336-2	chr4	146453836	146454836	+	725.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085522, intron 1 of 3)	intron (NM_001085522, intron 1 of 3)	5306.0	NM_001085522	433791.0	Mm.276881	NM_001085522	ENSMUSG00000070605	Zfp992	Gm13251	zinc finger protein 992	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35123075-2	chr17	35122575	35123575	+	725.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001128597, exon 2 of 3)	exon (NM_001128597, exon 2 of 3)	123.0	NM_032460	81845.0	Mm.7405	NM_032460	ENSMUSG00000092417	Gpank1	Bat-4|Bat4|D17H6S54E|G5	G patch domain and ankyrin repeats 1	protein-coding	1.5	3.0	0.5	3.5	8.5	0.0
Merged-chr3-108880070-2	chr3	108879570	108880570	+	725.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177091, intron 4 of 12)	G-rich|Low_complexity|Low_complexity	9938.0	NM_177091	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	14.0	25.0	12.0	3.0	0.0	4.0
Merged-chr8-4279744-1	chr8	4279244	4280244	+	725.0	f1_balb.idr	Intergenic	B3|SINE|B2	-3839.0	NM_011592	21856.0	Mm.195249	NM_011592	ENSMUSG00000002949	Timm44	0710005E20Rik|D8Ertd118e|Mimt44|Tim44	translocase of inner mitochondrial membrane 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101189077-2	chr15	101188577	101189577	+	725.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007395, intron 1 of 8)	intron (NM_007395, intron 1 of 8)	-4792.0	NR_105927	102466774.0		NR_105927	ENSMUSG00000106563	Mir6962	mmu-mir-6962	microRNA 6962	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-79589161-1	chr18	79588661	79589661	+	725.0	f1_c57bl6.idr	Intergenic	Intergenic	-457734.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	1.5	3.0	3.5	8.0	3.5	1.0
Merged-chr5-124444401-2	chr5	124443901	124444901	+	725.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310725, intron 1 of 6)	ID4_|SINE|ID	-1098.0	NM_001310723	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11035531-2	chr16	11035031	11036031	+	725.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26633.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60229506-2	chr11	60229006	60230006	+	725.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001039092, exon 14 of 14)	3' UTR (NM_001039092, exon 14 of 14)	-6925.0	NM_001358315	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117413626-3	chr2	117413138	117414138	+	725.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70761.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70872893-2	chr8	70872395	70873395	+	725.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026964, intron 1 of 4)	PB1D10|SINE|Alu	595.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	44.5	69.5	69.0	48.0	87.0	81.5
Merged-chr15-101377839-2	chr15	101377339	101378339	+	725.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7714.0	NM_028770	74127.0	Mm.440055	NM_028770	ENSMUSG00000037185	Krt80	1200016G03Rik|2310041I20Rik|Kb20	keratin 80	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-16735182-1	chr3	16734682	16735682	+	725.0	f1_c57bl6.idr	Intergenic	Intergenic	-81912.0	NR_153388	102632048.0	Mm.417635	NR_153388		Gm30223	-	predicted gene, 30223	ncRNA	2.0	0.0	0.0	1.0	0.0	0.0
Merged-chr12-73565256-2	chr12	73564756	73565756	+	725.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16773.0	NR_044985	73644.0	Mm.369885	NR_044985	ENSMUSG00000113800	2210039B01Rik	-	RIKEN cDNA 2210039B01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8372902-4	chr17	8372415	8373415	+	724.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161832, intron 1 of 10)	intron (NM_001161832, intron 1 of 10)	519.0	NM_001161832	21331.0	Mm.482744	NM_013682		T2	brachyury2	brachyury 2	protein-coding	0.0	0.0	2.0	9.0	12.5	0.0
Merged-chr11-76033595-3	chr11	76033086	76034086	+	724.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5804.0	NM_029658	76566.0	Mm.34131	NM_029658	ENSMUSG00000020846	Rflnb	1500005K14Rik|Fam101b|RefilinB|cfm	refilin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47437064-3	chr17	47436575	47437575	+	724.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145489, intron 1 of 4)	intron (NM_145489, intron 1 of 4)	300.0	NM_029296	75462.0	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110941734-4	chr11	110941239	110942239	+	724.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26294.0	NM_010604	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	2.5	1.5	0.5	0.0	2.5	0.0
Merged-chr1-172205935-4	chr1	172205461	172206461	+	724.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001329871, intron 1 of 3)	intron (NM_001329871, intron 1 of 3)	843.0	NM_001329871	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	43.0	84.0	77.5	50.5	113.0	119.5
Merged-chr5-150178382-4	chr5	150177894	150178894	+	724.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81536.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	4.0	0.0	1.5	6.5	2.5	2.5
Merged-chr1-88240772-3	chr1	88240213	88241213	+	724.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001281466, exon 17 of 42)	exon (NM_001281466, exon 17 of 42)	13693.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-60590700-3	chr3	60590210	60591210	+	724.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	89531.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	13.0	8.5	8.5	17.5	12.0	1.5
Merged-chr11-101604692-3	chr11	101604191	101605191	+	724.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6009.0	NM_001256318	666331.0	Mm.303457	NM_001256318		LOC666331	-	uncharacterized LOC666331	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102585666-3	chr4	102585164	102586164	+	724.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	-1894.0	NM_001177982	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.0	0.5	2.5	0.0	0.0	2.5
Merged-chr18-81566752-4	chr18	81566263	81567263	+	724.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	425317.0	NR_039589	100628596.0		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110394169-3	chr7	110393655	110394655	+	724.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 17 of 40)	MTC|LTR|ERVL-MaLR	172452.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28332727-2	chr17	28332227	28333227	+	724.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_011566, exon 13 of 13)	exon (NM_011566, exon 13 of 13)	4162.0	NM_001357628	19896.0	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117108851-2	chr11	117108351	117109351	+	724.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6321.0	NR_029459	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117966864-2	chr11	117966364	117967364	+	724.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007707, exon 2 of 2)	3' UTR (NM_007707, exon 2 of 2)	2502.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-104823329-3	chr13	104822838	104823838	+	724.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026075, intron 1 of 4)	intron (NM_026075, intron 1 of 4)	6168.0	NR_135272	67288.0	Mm.125465	NM_026075	ENSMUSG00000021716	Srek1ip1	3110031B13Rik|AI462702|AV348305|AW121048|Sfrs12ip1|Srsf12ip1	splicing regulatory glutamine/lysine-rich protein 1interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73044636-3	chr15	73044103	73045103	+	724.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029640, intron 3 of 21)	intron (NM_029640, intron 3 of 21)	11209.0	NM_029640	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4843637-4	chr11	4843150	4844150	+	724.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010898, intron 1 of 15)	B3|SINE|B2	5894.0	NM_001252250	18016.0	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	6.5	12.0	1.0	3.5	7.5	3.0
Merged-chr3-142526956-3	chr3	142526434	142527434	+	724.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3402.0	NM_001083312	229900.0	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-33170689-4	chr11	33170174	33171174	+	724.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7468.0	NM_008722	18148.0	Mm.485384	NM_008722	ENSMUSG00000057113	Npm1	B23|NO38|Npm	nucleophosmin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-14045178-3	chr10	14044615	14045615	+	724.81665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	78736.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	1.5	16.0	6.5	1.0	1.0	2.5
Merged-chr16-91843768-2	chr16	91843268	91844268	+	724.8000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 19 of 28)	intron (NM_001110275, intron 19 of 28)	87862.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63738913-3	chr9	63738420	63739420	+	724.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	19074.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88646362-3	chr8	88645853	88646853	+	724.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145857)	promoter-TSS (NM_145857)	-994.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	20.5	21.0	15.5	23.5	71.0	33.0
Merged-chr14-44052722-3	chr14	44052217	44053217	+	724.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46299.0	NM_001011876	630952.0		NM_001011876	ENSMUSG00000072598	Ang6	EG630952	angiogenin, ribonuclease A family, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123395591-5	chr5	123395129	123396129	+	724.766663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133917, intron 1 of 16)	intron (NM_133917, intron 1 of 16)	831.0	NM_177582	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53415086-2	chr4	53414586	53415586	+	724.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-25327.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-49486930-2	chr9	49486444	49487444	+	724.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172770)	promoter-TSS (NM_172770)	-719.0	NM_172770	235330.0	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding	6.0	6.5	2.5	1.5	3.5	2.0
Merged-chr3-84769445-2	chr3	84769035	84770035	+	724.75	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46042.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.0	13.0	15.5	22.0	10.0	14.5
Merged-chr2-61595583-4	chr2	61595059	61596059	+	724.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149323, intron 2 of 9)	intron (NR_149323, intron 2 of 9)	2462.0	NR_149323	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71670913-2	chr17	71670413	71671413	+	724.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2348.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-72821045-4	chr12	72820536	72821536	+	724.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59825.0	NM_008910	19042.0	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-48585435-6	chr4	48584982	48585982	+	724.694458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001356272, exon 1 of 10)	exon (NM_001356272, exon 1 of 10)	308.0	NM_021436	230157.0	Mm.422686	NM_021436	ENSMUSG00000028347	Tmeff1	A830033E11|M7365|TR-1|Tr1	transmembrane protein with EGF-like and two follistatin-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122312833-3	chr2	122312343	122313343	+	724.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305262, intron 3 of 9)	intron (NM_001305262, intron 3 of 9)	887.0	NM_001305262	213696.0	Mm.247121	NM_145395	ENSMUSG00000027224	Duoxa1	BC019755|Nip|Nip1	dual oxidase maturation factor 1	protein-coding	6.5	0.0	2.5	0.0	1.5	0.0
Merged-chr6-97214098-3	chr6	97213577	97214577	+	724.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022992, intron 1 of 2)	B1F|SINE|Alu	3285.0	NM_022992	65106.0	Mm.291014	NM_022992	ENSMUSG00000035199	Arl6ip5	5930404D22Rik|AV001879|Aip-5|Gtrap3-18|addiscin	ADP-ribosylation factor-like 6 interacting protein 5	protein-coding	15.5	14.5	9.5	9.0	8.5	8.0
Merged-chr5-23844649-1	chr5	23844149	23845149	+	724.666687	f0_c57.idr	promoter-TSS (NM_025394)	promoter-TSS (NM_025394)	-504.0	NM_025394	66169.0	Mm.291868	NM_025394	ENSMUSG00000028998	Tomm7	1110020J08Rik|AW047273|Tom7	translocase of outer mitochondrial membrane 7	protein-coding	78.5	178.0	160.0	47.5	81.0	50.5
Merged-chr11-52283399-3	chr11	52282894	52283894	+	724.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313981)	promoter-TSS (NM_001313981)	-380.0	NM_001313981	21414.0	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3090176-3	chr4	3089696	3090696	+	724.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	-81887.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173743245-3	chr1	173742779	173743779	+	724.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-1470.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	120.0	262.0	240.5	85.0	198.5	91.0
Merged-chr10-80398148-3	chr10	80397554	80398554	+	724.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001306143, intron 1 of 6)	intron (NM_001306143, intron 1 of 6)	1477.0	NM_013595	17192.0	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-34451479-3	chr12	34450976	34451976	+	724.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 4 of 27)	intron (NM_001271386, intron 4 of 27)	77413.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118585988-3	chr10	118585488	118586488	+	724.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-29463.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6826756-2	chr17	6826256	6827256	+	724.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-43976.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90451794-2	chr2	90451294	90452294	+	724.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 14 of 23)	intron (NM_008982, intron 14 of 23)	27380.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-52093096-4	chr16	52092611	52093611	+	724.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	61562.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132308514-3	chr7	132308016	132309016	+	724.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029935, intron 1 of 7)	URR1A|DNA|hAT-Charlie	-7148.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134173364-2	chr5	134172864	134173864	+	724.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_033572, intron 1 of 10)	B3A|SINE|B2	3403.0	NM_033572	94254.0	Mm.29508	NM_033572	ENSMUSG00000061979	Rcc1l	5730496C04Rik|AU019812|Wbscr16	reculator of chromosome condensation 1 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31432843-3	chr14	31432464	31433464	+	724.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	3136.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-54357697-3	chr3	54357192	54358192	+	724.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3415.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143269444-3	chr5	143268946	143269946	+	724.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017467, intron 1 of 6)	intron (NM_017467, intron 1 of 6)	576.0	NM_017467	54201.0	Mm.6666	NM_017467	ENSMUSG00000046658	Zfp316	Emzf1|Mzf3|Znf316	zinc finger protein 316	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75170564-2	chr14	75170064	75171064	+	724.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	MLT1C|LTR|ERVL-MaLR	34139.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78370653-2	chr17	78370153	78371153	+	724.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001285949, exon 8 of 8)	3' UTR (NM_001285949, exon 8 of 8)	47499.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45300818-2	chr7	45300318	45301318	+	724.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17945.0	NM_001033176	76713.0	Mm.425445	NM_001033176	ENSMUSG00000070568	Slc6a21	1700039E15Rik|Gm19188	solute carrier family 6 member 21	protein-coding	0.0	0.0	0.0	1.0	3.5	0.0
Merged-chr7-19311366-2	chr7	19310866	19311866	+	724.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1321.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90256485-2	chr3	90255985	90256985	+	724.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357152, intron 1 of 9)	intron (NM_001357152, intron 1 of 9)	2627.0	NM_001357152	74343.0	Mm.35627	NM_028881	ENSMUSG00000027936	Crtc2	4632407F12Rik|Torc2	CREB regulated transcription coactivator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-24439793-2	chr18	24439293	24440293	+	724.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-10623.0	NR_029573	387182.0		NR_029573	ENSMUSG00000065532	Mir187	Mirn187|mir-187|mmu-mir-187	microRNA 187	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-10293050-2	chr10	10292550	10293550	+	724.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	179264.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0.0	8.0	0.5	0.0	0.0	0.0
Merged-chr5-135976056-2	chr5	135975563	135976563	+	724.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-1587.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	2.5	12.5	7.0	7.5	0.5	0.0
Merged-chr16-17797196-2	chr16	17796696	17797696	+	724.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153790)	promoter-TSS (NM_153790)	-86.0	NM_153790	224024.0	Mm.194950	NM_153790	ENSMUSG00000012017	Scarf2	NSR1|SREC-II|SRECRP-1|Scatf1|Srec2|SrecII	scavenger receptor class F, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101820942-2	chr7	101820442	101821442	+	724.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008887, exon 2 of 3)	exon (NM_008887, exon 2 of 3)	2629.0	NM_008887	11859.0	Mm.5028	NM_008887	ENSMUSG00000007946	Phox2a	Arix|Phox2|Pmx2|Pmx2a|Px2a	paired-like homeobox 2a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-31146255-2	chr8	31145796	31146796	+	724.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4020.0	NM_144927	234138.0	Mm.349800	NM_144927	ENSMUSG00000031577	Tti2	-	TELO2 interacting protein 2	protein-coding	8.5	3.0	10.0	0.0	0.0	5.5
Merged-chr8-121669228-2	chr8	121668728	121669728	+	724.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17295.0	NM_080855	142682.0	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6647211-2	chr15	6646711	6647711	+	724.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011815, intron 12 of 17)	intron (NM_011815, intron 12 of 17)	7092.0	NR_155272	102632231.0	Mm.444780	NR_155272		LOC102632231	-	uncharacterized LOC102632231	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46010554-2	chr8	46010054	46011054	+	724.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026278)	promoter-TSS (NM_026278)	-48.0	NM_026278	67620.0	Mm.383914	NM_026278	ENSMUSG00000031637	Lrp2bp	1700113N17Rik|2310006J04Rik|4930479L12Rik|MegBP	Lrp2 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32854462-3	chr2	32854008	32855008	+	724.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7271.0	NM_001113569	20910.0	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8609209-2	chr4	8608709	8609709	+	724.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	73565.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	0.0	0.0	2.5	0.0	0.0	2.5
Merged-chr2-91052939-2	chr2	91052489	91053489	+	724.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1027.0	NM_008948	19182.0	Mm.289832	NM_008948	ENSMUSG00000002102	Psmc3	TBP-1	proteasome (prosome, macropain) 26S subunit, ATPase 3	protein-coding	1.5	8.5	4.0	11.5	8.0	6.5
Merged-chr12-111435351-2	chr12	111434851	111435851	+	724.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7310.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-18545943-1	chr10	18545443	18546443	+	724.5	f0_balb.idr	5' UTR (NM_019487, exon 1 of 4)	5' UTR (NM_019487, exon 1 of 4)	133.0	NM_019487	56016.0	Mm.35551	NM_019487	ENSMUSG00000019853	Hebp2	SOUL	heme binding protein 2	protein-coding	1.5	5.0	6.5	0.0	4.0	0.0
Merged-chr6-90736361-2	chr6	90735861	90736861	+	724.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356440, intron 1 of 13)	CpG	-19832.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27427881-2	chr2	27427381	27428381	+	724.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009500)	promoter-TSS (NM_009500)	-273.0	NM_009500	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96534091-2	chr9	96533591	96534591	+	724.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-55416.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106014398-2	chr11	106013898	106014898	+	724.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001037712, exon 4 of 13)	exon (NM_001037712, exon 4 of 13)	6195.0	NM_001037712	192775.0	Mm.343850	NM_001037712	ENSMUSG00000001901	Kcnh6	m-erg2	potassium voltage-gated channel, subfamily H (eag-related), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-10290424-2	chr3	10289924	10290924	+	724.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029310, intron 1 of 5)	intron (NM_029310, intron 1 of 5)	10759.0	NM_001357159	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145600431-2	chr6	145599931	145600931	+	724.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-15532.0	NM_009449	22147.0	Mm.270295	NM_009449	ENSMUSG00000067338	Tuba3b	M[a]7|Tuba7	tubulin, alpha 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32577847-2	chr2	32577347	32578347	+	724.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198191, intron 2 of 9)	intron (NM_198191, intron 2 of 9)	2129.0	NM_198191	227733.0	Mm.78923	NM_198191	ENSMUSG00000046854	Pip5kl1	BC028795	phosphatidylinositol-4-phosphate 5-kinase-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10407248-2	chr17	10406748	10407748	+	724.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 4 of 4)	intron (NM_027032, intron 4 of 4)	-48968.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93442299-2	chr1	93441799	93442799	+	724.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133808, intron 1 of 27)	intron (NM_133808, intron 1 of 27)	3402.0	NM_001301364	110611.0	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27928561-2	chr15	27928061	27929061	+	724.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	97287.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-78222234-2	chr16	78221734	78222734	+	724.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16E2|LTR|ERVL	33220.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99480701-2	chr9	99480201	99481201	+	724.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001165957)	TTS (NM_001165957)	10280.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	1.5	2.0	7.0	6.5	0.0	5.0
Merged-chr8-84965107-2	chr8	84964606	84965606	+	724.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027187, intron 4 of 7)	intron (NM_027187, intron 4 of 7)	905.0	NM_027187	69724.0	Mm.182470	NM_027187	ENSMUSG00000052926	Rnaseh2a	2400006P09Rik|RNASEHI|RNHIA|RNHL	ribonuclease H2, large subunit	protein-coding	5.0	6.0	23.0	9.5	1.0	6.0
Merged-chr3-30600374-3	chr3	30599870	30600870	+	724.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029690)	promoter-TSS (NM_029690)	-500.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-37042950-2	chr8	37042497	37043497	+	724.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-18759.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	11.0	0.5	6.5	1.0	1.0	5.0
Merged-chr5-64295410-2	chr5	64294910	64295910	+	724.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 11 of 18)	intron (NM_001289514, intron 11 of 18)	65053.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	16.5	18.0	13.0	3.5	10.5	9.5
Merged-chr2-103558431-2	chr2	103557931	103558931	+	724.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7879.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89421947-2	chr15	89421447	89422447	+	724.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_004843, intron 17 of 26)	intron (NR_004843, intron 17 of 26)	3915.0	NM_009948	12895.0	Mm.227738	NM_009948	ENSMUSG00000078937	Cpt1b	Cpt1|Cpt1-m|Cpti|Cpti-m|M-cpti	carnitine palmitoyltransferase 1b, muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24363389-2	chr7	24362889	24363889	+	724.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-6874.0	NM_001163510	16534.0	Mm.9911	NM_008433	ENSMUSG00000054342	Kcnn4	IK1|IKCA1|KCA4|KCa3.1|SK4|SKCas|mIKCa1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	protein-coding	4.0	4.0	0.0	0.0	1.0	0.0
Merged-chr11-106658571-1	chr11	106658071	106659071	+	724.5	f0_balb.idr	intron (NM_001032378, intron 13 of 13)	intron (NM_001032378, intron 13 of 13)	-45641.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117368810-2	chr8	117368310	117369310	+	724.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	19640.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5591383-2	chr18	5590883	5591883	+	724.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011546)	promoter-TSS (NM_011546)	-477.0	NM_011546	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	1.5	0.0	0.0	0.0	1.5	2.0
Merged-chr2-12002483-3	chr2	12001982	12002982	+	724.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	224729.0	NM_177268	320816.0	Mm.260201	NM_177268	ENSMUSG00000047909	Ankrd16	2810455F06Rik|AI646698|D430029B21Rik	ankyrin repeat domain 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-74224659-2	chr18	74224179	74225179	+	724.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	8467.0	NM_028868	74322.0	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	0.0	6.0	5.0	2.5	0.0	3.0
Merged-chr18-31636909-2	chr18	31636409	31637409	+	724.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172965, intron 2 of 20)	intron (NM_172965, intron 2 of 20)	1781.0	NM_001357555	269003.0	Mm.194538	NM_172965	ENSMUSG00000024260	Sap130	2610304F09Rik|6720406D06	Sin3A associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53059578-2	chr4	53059078	53060078	+	724.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 33 of 49)	intron (NM_013454, intron 33 of 49)	47698.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142575053-2	chr3	142574553	142575553	+	724.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	14697.0	NM_001289493	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114895543-2	chr11	114895043	114896043	+	724.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_170758, intron 3 of 6)	ORR1D1|LTR|ERVL-MaLR	5502.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-16524538-3	chr16	16524044	16525044	+	724.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	2867.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4111390-2	chr19	4110859	4111859	+	724.458374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008851, intron 17 of 22)	intron (NM_008851, intron 17 of 22)	10216.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83331811-3	chr8	83331371	83332371	+	724.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170691, intron 1 of 8)	intron (NM_001170691, intron 1 of 8)	615.0	NM_001170691	244548.0	Mm.38762	NM_178736	ENSMUSG00000035151	Elmod2	9830169G11Rik	ELMO/CED-12 domain containing 2	protein-coding	44.5	100.0	57.5	35.5	60.5	45.5
Merged-chr11-48988353-3	chr11	48987865	48988865	+	724.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011579, intron 1 of 1)	intron (NM_011579, intron 1 of 1)	3881.0	NM_011579	21822.0	Mm.15793	NM_011579	ENSMUSG00000078922	Tgtp1	Gtp2|Irgb6|Mg21|Tgtp	T cell specific GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-10919273-4	chr4	10918790	10919790	+	724.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44792.0	NM_026005	67157.0	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	17.0	19.0	18.5	20.5	11.0	0.5
Merged-chr12-112802688-4	chr12	112802160	112803160	+	724.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6315.0	NM_145450	217887.0	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Clba1|Flj20080	cDNA sequence BC022687	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10767375-4	chr16	10766884	10767884	+	724.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18152.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-69854114-4	chr14	69853619	69854619	+	724.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 3 of 6)	intron (NM_028560, intron 3 of 6)	13712.0	NM_028526	73523.0	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45660289-2	chr14	45659802	45660802	+	724.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-2159.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	22.5	43.0	29.5	28.5	37.5	30.0
Merged-chr9-118690049-2	chr9	118689549	118690549	+	724.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 14 of 27)	MTD|LTR|ERVL-MaLR	-21643.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr8-70504067-2	chr8	70503567	70504567	+	724.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025577)	TTS (NM_025577)	2359.0	NR_151646	66462.0	Mm.28242	NM_025577	ENSMUSG00000058833	Rex1bd	2810428I15Rik	required for excision 1-B domain containing	protein-coding	0.0	0.0	0.0	0.0	4.5	2.0
Merged-chr4-53092753-3	chr4	53092278	53093278	+	724.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013454, exon 9 of 50)	exon (NM_013454, exon 9 of 50)	67117.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83432866-1	chr15	83432366	83433366	+	724.333313	f0_balb.idr	promoter-TSS (NM_011862)	promoter-TSS (NM_011862)	-16.0	NM_001159510	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6559664-2	chr2	6559164	6560164	+	724.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110231, intron 13 of 15)	intron (NM_001110231, intron 13 of 15)	161998.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-28202324-3	chr11	28201814	28202814	+	724.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	382010.0	NM_001166661	216613.0	Mm.93759	NM_181577	ENSMUSG00000032878	Ccdc85a	-	coiled-coil domain containing 85A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-85842651-3	chr9	85842154	85843154	+	724.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164792)	promoter-TSS (NM_001164792)	-198.0	NM_001164792	21983.0	Mm.20864	NM_011627	ENSMUSG00000035274	Tpbg	5T4|AW495680|WAIF1	trophoblast glycoprotein	protein-coding	0.0	3.5	2.5	0.0	6.0	2.0
Merged-chr8-117470483-4	chr8	117469947	117470947	+	724.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11182.0	NR_106046	102465653.0		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121243027-4	chr3	121242461	121243461	+	724.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178936, intron 1 of 7)	MTE-int|LTR|ERVL-MaLR	20198.0	NM_001355678	99887.0	Mm.26088	NM_178936	ENSMUSG00000028132	Tmem56	4930577M16Rik|AU018104|AW109744|C730036B01Rik	transmembrane protein 56	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62373941-4	chr9	62373447	62374447	+	724.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 4 of 6)	intron (NM_009672, intron 4 of 6)	32604.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-42506793-2	chr18	42506246	42507246	+	724.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-4741.0	NM_001039474	56070.0	Mm.270511	NM_001039474	ENSMUSG00000024498	Tcerg1	2410022J09Rik|2900090C16Rik|AI428505|CA150b|FBP23|FBP28|Taf2s|ca150|p144	transcription elongation regulator 1 (CA150)	protein-coding	2.0	0.0	0.0	0.5	0.0	5.0
Merged-chr15-27938462-2	chr15	27937962	27938962	+	724.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	87386.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110727253-2	chr7	110726753	110727753	+	724.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40953.0	NM_001276301	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68030839-3	chr11	68030341	68031341	+	724.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018768, intron 6 of 7)	HAL1ME|LINE|L1	64383.0	NM_018768	55943.0	Mm.3973	NM_018768	ENSMUSG00000020903	Stx8	0610007H08Rik|1110002H11Rik|4930571E13Rik|CARB	syntaxin 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-97110824-2	chr5	97110324	97111324	+	724.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359913, intron 1 of 2)	L2c|LINE|L2	772.0	NM_001359910	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-70854560-2	chr2	70854060	70855060	+	724.200012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29080.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-107370613-3	chr7	107370110	107371110	+	724.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021889)	promoter-TSS (NM_021889)	-180.0	NM_021889	60510.0	Mm.302793	NM_021889	ENSMUSG00000062542	Syt9	-	synaptotagmin IX	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-178391617-3	chr1	178391147	178392147	+	724.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14371.0	NM_026626	68226.0	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-96860149-3	chr5	96859650	96860650	+	724.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-61122.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	1.0	3.5	8.0	10.0	5.0	5.5
Merged-chr16-32499869-4	chr16	32499304	32500304	+	724.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199309, intron 6 of 8)	intron (NM_199309, intron 6 of 8)	3523.0	NM_199309	245308.0	Mm.76859	NM_199309	ENSMUSG00000052363	Zdhhc19	Gm1744|Gm616	zinc finger, DHHC domain containing 19	protein-coding	1.0	4.0	0.0	0.0	6.0	0.0
Merged-chr17-56268211-2	chr17	56267711	56268711	+	724.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8556.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114274453-2	chr7	114273958	114274958	+	724.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_011965, exon 2 of 10)	exon (NM_011965, exon 2 of 10)	1658.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	4.0	2.0	7.5	2.5	16.0	8.5
Merged-chr12-84034686-2	chr12	84034186	84035186	+	724.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3693.0	NM_134247	171282.0	Mm.482217	NM_134247	ENSMUSG00000052392	Acot4	B430212I04Rik|PTE-Ib|Pte1b|Pte2b	acyl-CoA thioesterase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28215683-2	chr7	28215182	28216182	+	724.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B1|LTR|ERVK	35366.0	NM_001271370	13549.0	Mm.57249	NM_010092	ENSMUSG00000002409	Dyrk1b	Mirk	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-106640958-3	chr7	106640470	106641470	+	724.155579	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277182, intron 1 of 3)	MLT2B2|LTR|ERVL	3675.0	NM_001277179	434223.0	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	22.0	28.5	23.5	0.5	1.5	2.0
Merged-chr11-116032746-2	chr11	116032246	116033246	+	724.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286006, intron 1 of 15)	B3|SINE|B2	2430.0	NM_172569	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38782892-4	chr6	38782398	38783398	+	724.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 2 of 14)	intron (NM_010433, intron 2 of 14)	54413.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-118772938-4	chr12	118772410	118773410	+	724.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6BA|LTR|ERVK	-73419.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70879015-3	chr9	70878515	70879515	+	724.116638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	55793.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88203034-3	chr7	88202537	88203537	+	724.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-75048.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-32801522-3	chr14	32801005	32802005	+	724.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163616, intron 1 of 4)	intron (NM_001163616, intron 1 of 4)	15542.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-55277793-3	chr9	55277284	55278284	+	724.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	B1F|SINE|Alu	5841.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-75823912-3	chr13	75823424	75824424	+	724.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER31A|LTR|ERV1	-15961.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	47.5	181.5	95.5	119.5	203.5	129.5
Merged-chr4-133519261-5	chr4	133518697	133519697	+	724.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083916, intron 1 of 3)	CpG	234.0	NM_133707	69073.0	Mm.299081	NM_133707	ENSMUSG00000037600	Kdf1	1810019J16Rik	keratinocyte differentiation factor 1	protein-coding	2.0	0.0	15.0	0.0	0.5	2.5
Merged-chr8-74930977-2	chr8	74930477	74931477	+	724.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57803.0	NM_001294278	71597.0	Mm.158735	NM_027837	ENSMUSG00000031621	Isx	9130012O13Rik|Pix-1	intestine specific homeobox	protein-coding	0.0	0.5	2.5	0.0	0.0	1.0
Merged-chr8-84658327-2	chr8	84657870	84658870	+	724.095215	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	4482.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	5.0	0.0	0.5	0.0	1.0	0.5
Merged-chr10-20568487-3	chr10	20567987	20568987	+	724.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 2 of 12)	intron (NM_013875, intron 2 of 12)	-20159.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108644694-4	chr12	108644133	108645133	+	724.075012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	8880.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86712979-4	chr4	86712482	86713482	+	724.0625	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35573.0	NM_184088	329877.0	Mm.273718	NM_184088	ENSMUSG00000038024	Dennd4c	1700065A05Rik|AA420392	DENN/MADD domain containing 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133205484-2	chr4	133204999	133205999	+	724.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	7037.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	5.0	40.0	24.0	7.5	25.0	14.5
Merged-chr5-88592976-2	chr5	88592476	88593476	+	724.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 2 of 13)	intron (NM_001359208, intron 2 of 13)	9463.0	NM_001359209	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-56833440-2	chr14	56832940	56833940	+	724.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44C|LTR|ERVK	21451.0	NR_152252	100503842.0	Mm.297636	NR_152252	ENSMUSG00000100017	2410022M11Rik	-	RIKEN cDNA 2410022M11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-65100147-2	chr14	65099647	65100647	+	724.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2041.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-85678433-2	chr18	85677933	85678933	+	724.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2A1|LINE|L1	-716519.0	NM_001360910	246317.0	Mm.329578	NM_144946	ENSMUSG00000050321	Neto1	AI851453|Btcl1|C130005O10Rik	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35185612-2	chr7	35185112	35186112	+	724.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017394)	promoter-TSS (NM_017394)	-773.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	0.0	2.5	0.0	0.0	2.5	0.0
Merged-chr4-142101763-2	chr4	142101264	142102264	+	724.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_144531)	TTS (NM_144531)	-17460.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	3.5	0.5	5.0	6.5	0.0	3.0
Merged-chr8-120533168-2	chr8	120532668	120533668	+	724.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	-2689.0	NM_001145897	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49325138-2	chr13	49324638	49325638	+	724.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15930.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80805899-2	chr7	80805401	80806401	+	724.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2570.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	2.0	0.0	2.0	2.0	0.5	1.0
Merged-chr14-121313490-1	chr14	121312990	121313990	+	724.0	f1_c57bl6.idr	intron (NM_145465, intron 2 of 10)	intron (NM_145465, intron 2 of 10)	64784.0	NR_155502	320268.0	Mm.435974	NR_155502		B930095G15Rik	-	RIKEN cDNA B930095G15 gene	ncRNA	0.0	0.0	1.5	0.0	0.0	4.0
Merged-chr10-59949405-2	chr10	59948905	59949905	+	724.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029083)	TTS (NM_029083)	2365.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35082037-2	chr7	35081537	35082537	+	724.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ZP3AR|Satellite|Satellite	-25471.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141601208-2	chr4	141600703	141601703	+	724.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133754, intron 1 of 8)	intron (NM_133754, intron 1 of 8)	-1279.0	NM_001163256	74202.0	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	4.0	4.5	1.0	3.5	4.5	8.0
Merged-chr11-51634276-2	chr11	51633776	51634776	+	724.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025346, intron 1 of 9)	intron (NM_025346, intron 1 of 9)	1620.0	NM_025346	66089.0	Mm.288183	NM_025346	ENSMUSG00000001054	Rmnd5b	0610039K22Rik|Gid2	required for meiotic nuclear division 5 homolog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122098197-2	chr10	122097697	122098697	+	724.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1095.0	NM_153059	216395.0	Mm.236764	NM_153059	ENSMUSG00000034620	Tmem5	6330415D21Rik	transmembrane protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131389074-2	chr1	131388574	131389574	+	724.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 4 of 22)	intron (NM_001081011, intron 4 of 22)	-109511.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39464019-2	chr10	39463519	39464519	+	724.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122893, intron 3 of 13)	B4A|SINE|B4	94220.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146233047-1	chr5	146232547	146233547	+	724.0	f0_balb.idr	intron (NM_153599, intron 1 of 12)	intron (NM_153599, intron 1 of 12)	1797.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28692656-2	chr17	28692156	28693156	+	724.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357724)	promoter-TSS (NM_001357724)	88.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-132032091-1	chr3	132031591	132032591	+	724.0	f1_balb.idr	Intergenic	Intergenic	-53201.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	10.5	12.0	5.0	3.5	14.0	8.5
Merged-chr18-50065617-1	chr18	50065117	50066117	+	724.0	f1_c57bl6.idr	intron (NM_134131, intron 1 of 1)	MTD|LTR|ERVL-MaLR	-11955.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	28.0	36.0	34.5	12.5	17.0	31.5
Merged-chr2-94263130-3	chr2	94262637	94263637	+	724.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1738.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24712410-4	chr16	24711929	24712929	+	724.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 7 of 12)	intron (NM_178665, intron 7 of 12)	-9426.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-18871845-1	chr11	18871345	18872345	+	724.0	f0_balb.idr	Intergenic	CpG	147124.0	NM_001193271	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	2.5	0.0	3.0	3.5	2.0	1.0
Merged-chr7-80325738-3	chr7	80325313	80326313	+	724.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133952, exon 20 of 20)	exon (NM_133952, exon 20 of 20)	-1359.0	NM_173445	269955.0	Mm.474502	NM_173445	ENSMUSG00000038930	Rccd1	5830436H09|E430018M08Rik	RCC1 domain containing 1	protein-coding	0.5	2.5	5.5	3.0	6.5	11.0
Merged-chr15-89475676-2	chr15	89475176	89476176	+	724.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_077233)	promoter-TSS (NR_077233)	-576.0	NR_077233	100532730.0	Mm.461541	NR_077233		C230037L18Rik	-	RIKEN cDNA C230037L18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21439598-1	chr19	21439098	21440098	+	724.0	f0_balb.idr	intron (NM_010266, intron 1 of 13)	intron (NM_010266, intron 1 of 13)	33063.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	4.0	2.0	0.0	0.0	0.0	0.0
Merged-chr3-131245952-2	chr3	131245452	131246452	+	724.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008212, intron 3 of 7)	intron (NM_008212, intron 3 of 7)	26149.0	NM_008212	15107.0	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11604475-2	chr2	11603975	11604975	+	724.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1276.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106158368-2	chr8	106157868	106158868	+	724.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357319, intron 2 of 5)	B3|SINE|B2	8014.0	NM_001357319	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121584355-2	chr10	121583855	121584855	+	724.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019786, intron 1 of 20)	intron (NM_019786, intron 1 of 20)	2439.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139281932-2	chr5	139281432	139282432	+	724.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	28435.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75847580-2	chr15	75847080	75848080	+	724.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-5672.0	NM_172121	223642.0	Mm.209800	NM_172121	ENSMUSG00000075600	Zc3h3	BC049953|Kiaa0150|Smicl|Zc3hdc3	zinc finger CCCH type containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17295398-2	chr10	17294898	17295898	+	724.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-199616.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84094983-1	chr2	84094483	84095483	+	724.0	f0_balb.idr	Intergenic	Intergenic	-153757.0	NM_027964	71861.0	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	0.0	0.0	4.0	8.0	3.0	8.5
Merged-chr6-28949398-3	chr6	28948891	28949891	+	724.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73228.0	NR_029567	387237.0		NR_029567	ENSMUSG00000065469	Mir129-1	Mirn129-1|Mirn129b|miR-129b|mir-129-1	microRNA 129-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29002929-1	chr17	29002429	29003429	+	724.0	f1_c57bl6.idr	intron (NM_001357173, intron 1 of 13)	PB1D10|SINE|Alu	5066.0	NM_134115	106504.0	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-92007227-2	chr2	92006727	92007727	+	724.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011957, intron 1 of 11)	intron (NM_011957, intron 1 of 11)	16943.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	2.5	2.0	0.0	2.5	0.0	1.5
Merged-chr19-46530234-2	chr19	46529814	46530814	+	724.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019718)	TTS (NM_019718)	28666.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	1.0	3.5	1.0	4.5	2.0
Merged-chr2-71155661-2	chr2	71155161	71156161	+	724.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37607.0	NM_028593	73649.0	Mm.45435	NM_028593	ENSMUSG00000027015	Cybrd1	2210407P13Rik|Dcytb	cytochrome b reductase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102005682-2	chr5	102005182	102006182	+	724.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	64239.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	2.0	19.5	3.5	0.0	13.5	5.0
Merged-chr8-84637378-1	chr8	84636878	84637878	+	724.0	f1_c57bl6.idr	intron (NM_001252060, intron 45 of 47)	B4A|SINE|B4	25474.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	4.0	0.0	6.5	0.0	0.0	1.0
Merged-chr16-26032261-2	chr16	26031761	26032761	+	724.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173379, intron 1 of 14)	RMER19C|LTR|ERVK	73523.0	NM_173379	210530.0	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98342141-2	chr12	98341641	98342641	+	724.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73506.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-135766703-2	chr2	135766203	135767203	+	724.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355154, intron 1 of 36)	intron (NM_001355154, intron 1 of 36)	1865.0	NM_001355154	18798.0	Mm.38009	NM_013829	ENSMUSG00000039943	Plcb4	A930039J07Rik|AI854601|C230058B11Rik	phospholipase C, beta 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95640804-2	chr4	95640304	95641304	+	724.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029347, intron 5 of 10)	intron (NM_029347, intron 5 of 10)	61383.0	NM_029347	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	1.0	0.0	3.5	1.5	0.0	1.0
Merged-chr5-115154702-1	chr5	115154202	115155202	+	724.0	f1_c57bl6.idr	intron (NM_175403, intron 1 of 4)	intron (NM_175403, intron 1 of 4)	3474.0	NM_175403	109154.0	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	0.0	0.0	1.5	0.0	3.0	2.5
Merged-chr5-123574961-1	chr5	123574461	123575461	+	724.0	f1_balb.idr	Intergenic	Intergenic	-1946.0	NM_029929	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	0.0	0.0	1.0	0.0	0.5	0.0
Merged-chr12-26453249-2	chr12	26452749	26453749	+	724.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021384, intron 2 of 5)	intron (NM_021384, intron 2 of 5)	3203.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11422678-2	chr2	11422178	11423178	+	724.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24178.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152362451-2	chr4	152361951	152362951	+	724.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081376, intron 9 of 41)	intron (NM_001081376, intron 9 of 41)	23800.0	NM_001081376	269610.0	Mm.40192	NM_029216	ENSMUSG00000005045	Chd5	4930532L22Rik|AW060752|B230399N07Rik|CHD-5	chromodomain helicase DNA binding protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70883098-2	chr17	70882598	70883598	+	724.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22498.0	NR_035427	100316676.0		NR_035427	ENSMUSG00000080468	Mir1195	Mirn1195|mmu-mir-1195	microRNA 1195	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114605723-1	chr5	114605223	114606223	+	724.0	f1_c57bl6.idr	intron (NM_001004180, intron 2 of 2)	intron (NM_001004180, intron 2 of 2)	37472.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	0.0	0.0	0.0	1.5	0.0	0.0
Merged-chr5-72177114-1	chr5	72176614	72177614	+	724.0	f0_balb.idr	Intergenic	Intergenic	-8925.0	NM_001356614	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126205739-2	chr4	126205239	126206239	+	724.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3029.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	14.5	31.5	16.0	14.0	6.0	6.0
Merged-chr4-131913412-1	chr4	131912912	131913912	+	724.0	f0_balb.idr	non-coding (NR_102394, exon 3 of 3)	non-coding (NR_102394, exon 3 of 3)	6617.0	NR_102394	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90047814-2	chr7	90047352	90048352	+	724.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110364, intron 5 of 5)	intron (NR_110364, intron 5 of 5)	18693.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	37.5	102.0	54.5	19.0	80.0	52.0
Merged-chr1-67438680-2	chr1	67438180	67439180	+	724.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21A|LTR|ERV1	315653.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-30508785-2	chr6	30508285	30509285	+	724.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178625, exon 2 of 15)	exon (NM_178625, exon 2 of 15)	988.0	NM_001347087	72649.0	Mm.45418	NM_178625	ENSMUSG00000029782	Tmem209	2700094F01Rik|AI428435	transmembrane protein 209	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23329295-2	chr16	23328795	23329795	+	724.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 5 of 7)	intron (NM_001252505, intron 5 of 7)	38825.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76579110-1	chr11	76578610	76579610	+	724.0	f0_balb.idr	Intergenic	Intergenic	-1371.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.0	13.5	15.0	26.0	31.0	21.5
Merged-chr6-125232569-2	chr6	125232069	125233069	+	724.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145391)	promoter-TSS (NM_145391)	-709.0	NM_145391	213233.0	Mm.296902	NM_145391	ENSMUSG00000038213	Tapbpl	BC017613|TAPBPL-R|Tapbplr	TAP binding protein-like	protein-coding	23.5	40.5	38.0	8.5	15.0	21.5
Merged-chr8-79391656-1	chr8	79391156	79392156	+	724.0	f0_balb.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	7812.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26702004-2	chr8	26701504	26702504	+	724.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122419.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	4.5	3.5	11.5	2.5	5.0	1.5
Merged-chr6-97526329-4	chr6	97525800	97526800	+	723.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-38480.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	2.5	5.5	0.0	5.0	5.5
Merged-chr5-36560722-3	chr5	36560219	36561219	+	723.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	21678.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	1.0	8.5	7.5	0.0	3.5	5.5
Merged-chr1-138186950-3	chr1	138186447	138187447	+	723.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11642.0	NM_001268286	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-68319109-3	chr15	68318609	68319609	+	723.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18401.0	NR_029534	387226.0		NR_029534	ENSMUSG00000065476	Mir30b	Mirn30b|mir-30b|mmu-mir-30b	microRNA 30b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34344286-5	chr13	34343771	34344771	+	723.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033167, exon 1 of 11)	exon (NM_001033167, exon 1 of 11)	911.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	1.0	11.0	2.0	0.0	5.5	1.0
Merged-chr5-117493179-2	chr5	117492679	117493679	+	723.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	79177.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	6.0	0.0	1.0	3.5	0.0	0.0
Merged-chr5-65881912-2	chr5	65881412	65882412	+	723.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	18343.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105748532-3	chr1	105748029	105749029	+	723.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173187, intron 26 of 28)	intron (NM_173187, intron 26 of 28)	-32194.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	11.5	34.0	31.0	5.5	29.5	20.0
Merged-chr12-85112598-2	chr12	85112098	85113098	+	723.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_030225, intron 2 of 14)	B1F2|SINE|Alu	1765.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-48380860-4	chr4	48380398	48381398	+	723.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281978, intron 4 of 18)	intron (NM_001281978, intron 4 of 18)	92565.0	NM_172304	269536.0	Mm.272025	NM_172304	ENSMUSG00000028345	Tex10	2610206N19Rik|2810462N03Rik|BC006867	testis expressed gene 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79290657-2	chr11	79290157	79291157	+	723.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35962.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0.0	32.5	5.0	2.0	1.0	6.0
Merged-chr7-101850613-2	chr7	101850113	101851113	+	723.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303239, intron 2 of 5)	intron (NM_001303239, intron 2 of 5)	-5282.0	NM_008035	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165958348-4	chr1	165957839	165958839	+	723.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198932, intron 1 of 15)	intron (NM_198932, intron 1 of 15)	-23391.0	NM_198933	18986.0	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84145538-4	chr17	84145040	84146040	+	723.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42407.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46033356-2	chr17	46032856	46033856	+	723.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287058)	promoter-TSS (NM_001287058)	-979.0	NM_001287057	22339.0	Mm.282184	NM_009505	ENSMUSG00000023951	Vegfa	Vegf|Vpf	vascular endothelial growth factor A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43595999-2	chr13	43595499	43596499	+	723.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19798.0	NM_183204	328234.0	Mm.40588	NM_183204	ENSMUSG00000044164	Rnf182	C630023L15Rik	ring finger protein 182	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83191725-2	chr11	83191225	83192225	+	723.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_011409, intron 1 of 2)	intron (NM_011409, intron 1 of 2)	395.0	NM_011409	20557.0	Mm.290922	NM_011409	ENSMUSG00000018986	Slfn3	-	schlafen 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41129599-4	chr4	41129098	41130098	+	723.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5259.0	NM_139236	230082.0	Mm.285797	NM_139236	ENSMUSG00000028430	Nol6	AA410091|Nrap	nucleolar protein family 6 (RNA-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43678491-3	chr7	43677968	43678968	+	723.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145582)	TTS (NM_145582)	6437.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-66946118-3	chr6	66945589	66946589	+	723.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177560, intron 3 of 4)	intron (NM_001177560, intron 3 of 4)	49198.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87042232-3	chr1	87041693	87042693	+	723.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172157, intron 15 of 21)	intron (NM_001172157, intron 15 of 21)	47735.0	NM_007433	11650.0	Mm.195224	NM_007433	ENSMUSG00000026246	Alppl2	Akp5|C77216|D1Ertd816e|EAP	alkaline phosphatase, placental-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181213160-3	chr2	181212659	181213659	+	723.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011481)	promoter-TSS (NM_011481)	12.0	NM_011481	20811.0	Mm.4752	NM_011481	ENSMUSG00000027579	Srms	A230069J08Rik|srm	src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134614542-3	chr5	134614051	134615051	+	723.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020044, intron 1 of 12)	intron (NM_020044, intron 1 of 12)	474.0	NM_022964	56743.0	Mm.391375	NM_020044	ENSMUSG00000040751	Lat2	AW125574|LAB|NTAL|WSCR5|Wbscr15|Wbscr5	linker for activation of T cells family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44988801-2	chr7	44988302	44989302	+	723.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_045266, intron 1 of 1)	B1_Mus1|SINE|Alu	1902.0	NR_045266	100502630.0	Mm.490013	NR_045266	ENSMUSG00000087138	Gm15545	-	predicted gene 15545	ncRNA	1.0	7.5	1.0	3.5	2.0	1.5
Merged-chr11-11687812-4	chr11	11687318	11688318	+	723.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025597, intron 1 of 7)	intron (NM_001025597, intron 1 of 7)	1893.0	NM_001025597	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56587576-2	chr17	56587076	56588076	+	723.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163300, intron 1 of 20)	intron (NM_001163300, intron 1 of 20)	2594.0	NM_001163300	224903.0	Mm.255066	NM_001163300	ENSMUSG00000071054	Safb	3110021E02Rik|5330423C17Rik|AU018122|D18386|E130307D12|HAP|HET|SAF-B1|SAFB1	scaffold attachment factor B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-66813874-2	chr10	66813374	66814374	+	723.708374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	106510.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-104352315-3	chr11	104351815	104352815	+	723.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 7 of 14)	ID4_|SINE|ID	89976.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44717063-3	chr16	44716555	44717555	+	723.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7246.0	NM_145972	212547.0	Mm.310573	NM_145972	ENSMUSG00000036208	Nepro	-	nucleolus and neural progenitor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-189662076-3	chr1	189661571	189662571	+	723.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081363, exon 11 of 18)	exon (NM_001081363, exon 11 of 18)	26015.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-32572705-3	chr14	32572208	32573208	+	723.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081221, intron 18 of 20)	intron (NM_001081221, intron 18 of 20)	-26700.0	NM_001347590	107751.0	Mm.119274	NM_001001796	ENSMUSG00000041730	Prrxl1	Drg11|Drgx	paired related homeobox protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87472226-2	chr11	87471726	87472726	+	723.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	L1Md_A|LINE|L1	44635.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20794360-3	chr11	20793859	20794859	+	723.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36749.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-41162932-3	chr15	41162389	41163389	+	723.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10812.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94476367-3	chr10	94475797	94476797	+	723.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-38560.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-68905593-2	chr3	68905093	68906093	+	723.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026641, intron 18 of 19)	intron (NM_026641, intron 18 of 19)	36007.0	NM_001167996	68725.0	Mm.45741	NM_001167996	ENSMUSG00000046999	1110032F04Rik	AI115547	RIKEN cDNA 1110032F04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-94254241-2	chr2	94253741	94254741	+	723.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7158.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-46009121-6	chr9	46008654	46009654	+	723.638916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357241, intron 1 of 5)	RMER10A|LTR|ERVL	3536.0	NM_001357241	18475.0	Mm.200859	NM_008775	ENSMUSG00000003131	Pafah1b2	2610005M20Rik|AI747451|AU021353|Pafahb|mus[b]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44590389-3	chr10	44589831	44590831	+	723.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-131583.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60488404-3	chr13	60487905	60488905	+	723.600037	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113542.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	2.0	1.5	3.5	0.0	0.0	0.0
Merged-chr10-75314336-2	chr10	75313836	75314836	+	723.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2541.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134366089-3	chr6	134365557	134366557	+	723.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153848, intron 3 of 8)	intron (NR_153848, intron 3 of 8)	-30272.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	1.5	2.5	2.5	3.0	6.0	11.0
Merged-chr6-13599937-3	chr6	13599449	13600449	+	723.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155435, intron 1 of 3)	intron (NR_155435, intron 1 of 3)	8149.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	5.5	7.0	7.0	7.0	9.5	10.0
Merged-chr5-141064997-3	chr5	141064508	141065508	+	723.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-64412.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-105967816-3	chr11	105967319	105968319	+	723.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207624)	promoter-TSS (NM_207624)	-126.0	NM_001281819	11421.0	Mm.754	NM_009598	ENSMUSG00000020681	Ace	AW208573|CD143	angiotensin I converting enzyme (peptidyl-dipeptidase A) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26122772-4	chr2	26122295	26123295	+	723.50415	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026495)	promoter-TSS (NM_026495)	16.0	NM_026495	67991.0	Mm.131074	NM_026495	ENSMUSG00000026932	Nacc2	0610020I02Rik|AI448087|Btbd14a|C030048H19Rik	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-42865042-2	chr8	42864542	42865542	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	276444.0	NM_177742	244448.0	Mm.64542	NM_177742	ENSMUSG00000031651	Triml1	4933403D14|BC050188	tripartite motif family-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-21855518-2	chr1	21855018	21856018	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023872, intron 1 of 13)	intron (NM_023872, intron 1 of 13)	106424.0	NM_001160139	226922.0	Mm.336519	NM_023872	ENSMUSG00000028033	Kcnq5	7730402H11|9230107O05Rik|AA589396|D1Mgi1	potassium voltage-gated channel, subfamily Q, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50851183-2	chr11	50850683	50851683	+	723.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_173372, exon 2 of 11)	exon (NM_173372, exon 2 of 11)	498.0	NM_173372	108072.0	Mm.134265	NM_173372	ENSMUSG00000000617	Grm6	BC021919|Gm3|Gprc1f|mGluR6|nerg1|nob2|nob3|nob4	glutamate receptor, metabotropic 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54979325-1	chr18	54978825	54979825	+	723.5	f0_balb.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	10855.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80987321-2	chr18	80986821	80987821	+	723.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178280)	promoter-TSS (NM_178280)	-743.0	NM_178280	20689.0	Mm.215917	NM_178280	ENSMUSG00000024565	Sall3	B130022O04Rik|Msal|Msal-1|Sal|Salt|Spalt	spalt like transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34870460-6	chr6	34870033	34871033	+	723.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197986, intron 1 of 1)	intron (NM_197986, intron 1 of 1)	7387.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	5.5	12.0	3.5	3.0	8.0	5.0
Merged-chr13-63432946-2	chr13	63432446	63433446	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1201.0	NM_001282942	14088.0	Mm.126106	NM_007985	ENSMUSG00000021461	Fancc	Facc	Fanconi anemia, complementation group C	protein-coding	0.0	4.5	0.0	3.0	1.5	3.0
Merged-chr6-97423978-2	chr6	97423478	97424478	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	35308.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64927233-2	chr1	64926733	64927733	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 2 of 7)	intron (NM_001039493, intron 2 of 7)	29591.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114701050-2	chr5	114700559	114701559	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-6720.0	NM_029992	77832.0	Mm.239698	NM_029992	ENSMUSG00000002486	Tchp	A930031F18Rik|AV279199	trichoplein, keratin filament binding	protein-coding	0.0	9.5	7.5	1.0	7.5	3.0
Merged-chr11-114965091-2	chr11	114964537	114965537	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4620.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	90.0	59.5	103.5	21.5	50.0	70.5
Merged-chr6-124804351-2	chr6	124803851	124804851	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4310.0	NM_001306051	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5709185-2	chr17	5708685	5709685	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 3 of 8)	intron (NM_146073, intron 3 of 8)	-89472.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-77222128-2	chr1	77221628	77222628	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	274640.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	2.5	1.0	2.0	1.0	1.0	0.5
Merged-chr18-90600729-2	chr18	90600254	90601254	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20929.0	NM_001362365	108168395.0	Mm.391131	NM_001362365	ENSMUSG00000110277	Gm45871	-	predicted gene 45871	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167658936-2	chr2	167658436	167659436	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145538, intron 1 of 5)	L2a|LINE|L2	2608.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-9667272-2	chr6	9666772	9667772	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	717253.0	NM_008751	18231.0	Mm.46954	NM_008751	ENSMUSG00000046178	Nxph1	C130005L03Rik	neurexophilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-38488302-2	chr3	38487802	38488802	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3486.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4302844-2	chr19	4302344	4303344	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	3378.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0.0	4.0	0.5	0.0	4.5	3.5
Merged-chr3-100765566-4	chr3	100765067	100766067	+	723.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-59892.0	NM_178594	242122.0	Mm.137467	NM_178594	ENSMUSG00000051076	Vtcn1	B7h4|B7s1|B7x|BC032925	V-set domain containing T cell activation inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25274531-2	chr7	25274031	25275031	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302811, intron 2 of 20)	intron (NM_001302811, intron 2 of 20)	6832.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-84040132-2	chr6	84039632	84040632	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 3 of 54)	(TC)n|Simple_repeat|Simple_repeat	20746.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-24211258-2	chr9	24210758	24211758	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175678, intron 3 of 9)	GA-rich|Low_complexity|Low_complexity	113240.0	NM_175678	319239.0	Mm.130824	NM_175678	ENSMUSG00000043659	Npsr1	9330128H10Rik|GPRA|Gpr154|MVTR|PGR14|VRR1	neuropeptide S receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-56922111-2	chr6	56921611	56922611	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360963, intron 1 of 9)	intron (NM_001360963, intron 1 of 9)	1821.0	NM_026004	107569.0	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|P5'N-1|P5N-1|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4947170-2	chr11	4946670	4947670	+	723.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243043)	promoter-TSS (NM_001243043)	-351.0	NM_001243043	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9667240-2	chr4	9666740	9667740	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	1922.0	NM_023066	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0.0	0.0	2.5	0.0	0.0	0.0
Merged-chr14-49171501-2	chr14	49171001	49172001	+	723.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027492)	promoter-TSS (NM_027492)	-745.0	NM_027492	70646.0	Mm.275688	NM_027492	ENSMUSG00000036282	Naa30	4930487N19Rik|5730533P17Rik|AI447922|AW322455|Nat12	N(alpha)-acetyltransferase 30, NatC catalytic subunit	protein-coding	10.5	25.0	13.5	2.0	10.0	7.5
Merged-chr11-117961018-2	chr11	117960518	117961518	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8348.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73890153-2	chr12	73889653	73890653	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A|LTR|ERVL	-11171.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-164151882-2	chr1	164151382	164152382	+	723.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007976)	promoter-TSS (NM_007976)	47.0	NM_007976	14067.0	Mm.12900	NM_007976	ENSMUSG00000026579	F5	AI173222|Cf-5|Cf5	coagulation factor V	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122322622-2	chr7	122322122	122323122	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	33497.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-3741419-2	chr16	3740919	3741919	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2680.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-14372774-2	chr16	14372274	14373274	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008576, intron 1 of 30)	intron (NM_008576, intron 1 of 30)	11216.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	9.0	0.0	0.5	0.0	0.0	0.0
Merged-chr10-117722462-2	chr10	117721962	117722962	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11704.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21128953-2	chr9	21128453	21129453	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205312, intron 1 of 24)	RSINE1|SINE|B4	2322.0	NM_018793	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-44386120-2	chr18	44385620	44386620	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027490, intron 1 of 10)	intron (NM_027490, intron 1 of 10)	5620.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79329503-2	chr15	79329003	79330003	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1132.0	NM_001199023	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12896823-2	chr13	12896323	12897323	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-96744.0	NM_011118	18812.0	Mm.457984	NM_011118	ENSMUSG00000056457	Prl2c3	Ghd1|MRP-2|MRP-3|Mrpplf3|PLF-2|PLF-3|Plf2|Prl2c4|mrp/plf3	prolactin family 2, subfamily c, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34367544-2	chr6	34367044	34368044	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008012, intron 9 of 9)	intron (NM_008012, intron 9 of 9)	13398.0	NM_008012	14187.0	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65440393-2	chr18	65439893	65440893	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172833, intron 2 of 15)	B1F|SINE|Alu	9396.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19851589-2	chr7	19851089	19852089	+	723.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001270489)	promoter-TSS (NM_001270489)	-414.0	NM_001270489	100502736.0	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-10893107-2	chr8	10892607	10893607	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6815.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31472940-2	chr2	31472440	31473440	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_002687, intron 1 of 15)	intron (NR_002687, intron 1 of 15)	2632.0	NR_002687	432466.0	Mm.333323	NR_002687	ENSMUSG00000046687	Gm5424	EG432466	argininosuccinate synthase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87008543-2	chr3	87008043	87009043	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-9203.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	1.0	9.0	5.0	3.0	7.5	6.5
Merged-chr6-25809953-2	chr6	25809453	25810453	+	723.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133931)	promoter-TSS (NM_133931)	-727.0	NM_133931	101185.0	Mm.274589	NM_133931	ENSMUSG00000029676	Pot1a	1500031H18Rik|AI851169|Pot1	protection of telomeres 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79619900-2	chr8	79619400	79620400	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-19776.0	NM_001256033	73945.0	Mm.34348	NM_001081164	ENSMUSG00000036990	Otud4	4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046	OTU domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128038831-2	chr10	128038331	128039331	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282976, intron 2 of 7)	ID4_|SINE|ID	3485.0	NM_001113199	17938.0	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142688687-3	chr3	142688193	142689193	+	723.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR1B-int|LTR|ERV1	-12355.0	NM_173763	229905.0	Mm.289643	NM_173763	ENSMUSG00000040213	Kyat3	Ccbl2|KATIII|Kat3	kynurenine aminotransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89238016-2	chr3	89237516	89238516	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039466, intron 7 of 8)	intron (NM_001039466, intron 7 of 8)	6997.0	NR_121683	360213.0	Mm.331156	NM_183037	ENSMUSG00000042766	Trim46	TRIFIC	tripartite motif-containing 46	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88287257-2	chr7	88286715	88287715	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311790, intron 3 of 3)	intron (NM_001311790, intron 3 of 3)	9130.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	4.0	9.0	6.5	3.5	6.5
Merged-chr4-43967768-2	chr4	43967268	43968268	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027450, intron 1 of 4)	intron (NM_027450, intron 1 of 4)	10066.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61147402-3	chr11	61146884	61147884	+	723.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021349, intron 3 of 3)	CpG	6549.0	NM_021349	57916.0	Mm.265915	NM_021349	ENSMUSG00000010142	Tnfrsf13b	1200009E08Rik|Taci	tumor necrosis factor receptor superfamily, member 13b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41305077-2	chr10	41304577	41305577	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16C|LTR|ERVL	-1836.0	NM_133999	103199.0	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87959283-2	chr3	87958783	87959783	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10590.0	NM_007759	12904.0	Mm.4757	NM_007759	ENSMUSG00000004885	Crabp2	AI893628|Crabp-2|CrabpII	cellular retinoic acid binding protein II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122892059-2	chr8	122891559	122892559	+	723.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037865, exon 10 of 14)	non-coding (NR_037865, exon 10 of 14)	43685.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-33150933-2	chr15	33150433	33151433	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176073, intron 1 of 7)	L1_Mus3|LINE|L1	67804.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120722661-2	chr8	120722161	120723161	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-13697.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124304915-3	chr6	124304525	124305525	+	723.488892	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170395, intron 1 of 16)	intron (NM_001170395, intron 1 of 16)	374.0	NM_053094	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88522845-3	chr6	88522341	88523341	+	723.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-4041.0	NM_016906	53421.0	Mm.28375	NM_016906	ENSMUSG00000030082	Sec61a1	AA408394|AA410007|Sec61a	Sec61 alpha 1 subunit (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-67473183-3	chr4	67472662	67473662	+	723.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	645611.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99136375-3	chr7	99135860	99136860	+	723.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 1 of 14)	MER21C|LTR|ERVL	4784.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	3.0	1.5	11.5	5.5	6.5	3.0
Merged-chr3-59309869-3	chr3	59309380	59310380	+	723.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 42 of 43)	MLT1C|LTR|ERVL-MaLR	34376.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	0.0	24.5	0.0	9.5	11.0	25.5
Merged-chr5-149016021-3	chr5	149015494	149016494	+	723.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9032.0	NR_040429	100503307.0	Mm.188008	NR_040429	ENSMUSG00000086610	Gm15408	-	predicted gene 15408	ncRNA	0.0	0.0	2.5	2.5	0.0	0.0
Merged-chr6-125361557-2	chr6	125361057	125362057	+	723.416626	f1_balb.idr|f1_c57bl6.idr	exon (NM_011609, exon 9 of 10)	exon (NM_011609, exon 9 of 10)	11834.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr11-121078199-6	chr11	121077710	121078710	+	723.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145373, intron 1 of 5)	RLTR15|LTR|ERVK	2929.0	NM_145373	209588.0	Mm.69553	NM_145373	ENSMUSG00000025165	Sectm1a	BC010462	secreted and transmembrane 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34782636-4	chr2	34782161	34783161	+	723.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145522, intron 6 of 7)	intron (NM_145522, intron 6 of 7)	10571.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10959755-4	chr19	10959234	10960234	+	723.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10468.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114666397-2	chr11	114665897	114666897	+	723.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2146.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98813818-2	chr7	98813318	98814318	+	723.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21294.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86666788-2	chr6	86666287	86667287	+	723.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010751, intron 2 of 5)	intron (NM_010751, intron 2 of 5)	2372.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-58502362-2	chr4	58501862	58502862	+	723.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172989, intron 2 of 3)	intron (NM_172989, intron 2 of 3)	-2959.0	NM_001290486	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101196548-2	chr15	101196048	101197048	+	723.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007395, intron 3 of 8)	intron (NM_007395, intron 3 of 8)	2679.0	NR_105927	102466774.0		NR_105927	ENSMUSG00000106563	Mir6962	mmu-mir-6962	microRNA 6962	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34149553-2	chr11	34149067	34150067	+	723.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51013.0	NR_155520	76874.0	Mm.437529	NR_155520		4930469K13Rik	-	RIKEN cDNA 4930469K13 gene	ncRNA	0.0	0.0	2.0	0.0	0.0	1.5
Merged-chr11-120342895-2	chr11	120342395	120343395	+	723.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	4518.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-68996467-3	chr8	68995965	68996965	+	723.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92271.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	15.0	22.0	24.0	12.5	19.0	10.5
Merged-chr2-148046371-3	chr2	148045819	148046819	+	723.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291067)	promoter-TSS (NM_001291067)	-371.0	NM_001291065	15376.0	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	0.0	6.0	1.0	7.0	0.5	1.0
Merged-chr15-83452119-1	chr15	83451619	83452619	+	723.333313	f0_balb.idr	intron (NM_001358643, intron 1 of 9)	intron (NM_001358643, intron 1 of 9)	-4239.0	NM_001358644	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128701150-3	chr8	128700646	128701646	+	723.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010578, intron 1 of 15)	Lx3_Mus|LINE|L1	15492.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-14173560-3	chr10	14173028	14174028	+	723.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	207149.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	1.0	6.0	2.5	3.0	4.5	2.5
Merged-chr16-55819025-3	chr16	55818505	55819505	+	723.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159394, exon 3 of 12)	exon (NM_001159394, exon 3 of 12)	3133.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166575787-2	chr2	166575287	166576287	+	723.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 31 of 39)	intron (NM_177782, intron 31 of 39)	11265.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-17915344-3	chr14	17914826	17915826	+	723.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-66318.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	3.5	0.0	0.0	0.0	0.0
Merged-chr2-38291678-3	chr2	38291168	38292168	+	723.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-4284.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-15027129-3	chr8	15026638	15027638	+	723.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_029116, exon 2 of 2)	5' UTR (NM_029116, exon 2 of 2)	16113.0	NM_029116	74901.0	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	0.0	0.0	0.5	0.0	0.5	0.0
Merged-chr16-76563024-3	chr16	76562520	76563520	+	723.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14225.0	NR_155449	102632730.0		NR_155449		Gm30726	-	predicted gene, 30726	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128188664-3	chr10	128188120	128189120	+	723.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6015.0	NM_001285777	216456.0	Mm.30102	NM_001033264	ENSMUSG00000044005	Gls2	A330074B06Rik|AI195532|GA|GLS|Lga	glutaminase 2 (liver, mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-77433288-5	chr8	77432658	77433658	+	723.320007	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 3 of 22)	intron (NM_030113, intron 3 of 22)	-83898.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34869031-4	chr6	34868503	34869503	+	723.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197986, intron 1 of 1)	PB1D11|SINE|Alu	5857.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53809679-4	chr11	53809217	53810217	+	723.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	LTR33|LTR|ERVL	39244.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-102663633-3	chr13	102663141	102664141	+	723.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29906.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	2.0	10.5	4.0	2.0	10.0	9.5
Merged-chr11-74840433-3	chr11	74840038	74841038	+	723.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010813, intron 4 of 5)	intron (NM_010813, intron 4 of 5)	9614.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr3-142623877-2	chr3	142623377	142624377	+	723.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105802)	promoter-TSS (NR_105802)	69.0	NR_105802	102465200.0		NR_105802	ENSMUSG00000098871	Mir6381	Gm27963|mmu-mir-6381	microRNA 6381	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25089261-2	chr8	25088761	25089761	+	723.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 1 of 11)	MLT1B|LTR|ERVL-MaLR	12550.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135179172-6	chr4	135178609	135179609	+	723.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58464.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133748418-2	chr4	133747931	133748931	+	723.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080819, intron 1 of 19)	intron (NM_001080819, intron 1 of 19)	5180.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	0.5	0.5	13.0	6.5	20.0	21.0
Merged-chr7-126637320-2	chr7	126636820	126637820	+	723.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-11850.0	NM_019738	56312.0	Mm.18742	NM_019738	ENSMUSG00000030717	Nupr1	2310032H04Rik|Com1|p8	nuclear protein transcription regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77604181-2	chr10	77603615	77604615	+	723.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1982.0	NM_001301672	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9913473-4	chr3	9912975	9913975	+	723.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79796.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12571103-3	chr19	12570592	12571592	+	723.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2418.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	31.5	114.0	93.0	5.0	10.5	14.5
Merged-chr9-21366508-5	chr9	21365905	21366905	+	723.200012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1466.0	NM_001042708	16201.0	Mm.440026	NM_010561	ENSMUSG00000032178	Ilf3	MBII-26|MPHOSPH4|NF90|NFAR	interleukin enhancer binding factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36744673-2	chr1	36744173	36745173	+	723.1999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NR_040290, intron 7 of 8)	intron (NR_040290, intron 7 of 8)	-17125.0	NM_009539	22637.0	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107100265-2	chr13	107099765	107100765	+	723.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77695.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44655843-3	chr9	44655322	44656322	+	723.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	-17411.0	NM_001277851	58866.0	Mm.45380	NM_021481	ENSMUSG00000032098	Treh	2210412M19Rik	trehalase (brush-border membrane glycoprotein)	protein-coding	5.5	6.0	10.0	2.5	6.5	10.0
Merged-chr9-45987695-2	chr9	45987195	45988195	+	723.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357241, intron 1 of 5)	(TTTC)n|Simple_repeat|Simple_repeat	-2301.0	NM_001357238	18475.0	Mm.200859	NM_008775	ENSMUSG00000003131	Pafah1b2	2610005M20Rik|AI747451|AU021353|Pafahb|mus[b]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	protein-coding	1.0	3.0	0.0	1.0	3.0	0.0
Merged-chr10-37144193-2	chr10	37143693	37144693	+	723.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5267.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-85143696-2	chr16	85143210	85144210	+	723.166626	f0_balb.idr|f1_balb.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	29997.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	6.5	1.0	13.0	10.5	8.5	12.5
Merged-chr9-70833793-3	chr9	70833291	70834291	+	723.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	101017.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-99027055-6	chr6	99026658	99027658	+	723.138916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 4 of 17)	intron (NM_001197321, intron 4 of 17)	1140.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-47906305-3	chr8	47905798	47906798	+	723.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133791, intron 2 of 22)	intron (NM_133791, intron 2 of 22)	81816.0	NM_029383	75677.0	Mm.390033	NM_029383	ENSMUSG00000038064	Cldn22	2210404A22Rik|5330431C14Rik|9530051B05Rik	claudin 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-19715117-5	chr14	19714621	19715621	+	723.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36136.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134853262-2	chr1	134852762	134853762	+	723.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081307, intron 13 of 23)	intron (NM_001081307, intron 13 of 23)	-49541.0	NR_015606	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23283187-4	chr16	23282687	23283687	+	723.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	MTB_Mm|LTR|ERVL-MaLR	-7283.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35174177-2	chr17	35173677	35174677	+	723.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019467, intron 1 of 7)	intron (NM_019467, intron 1 of 7)	1875.0	NM_019467	11629.0	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71499118-2	chr2	71498618	71499618	+	723.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025633, intron 1 of 9)	intron (NM_025633, intron 1 of 9)	-30327.0	NM_010053	13390.0	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127797465-1	chr3	127796965	127797965	+	723.0	f1_c57bl6.idr	3' UTR (NM_145133, exon 3 of 3)	3' UTR (NM_145133, exon 3 of 3)	6808.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	4.5	23.0	5.0	0.0	11.5	15.5
Merged-chr15-101251273-2	chr15	101250773	101251773	+	723.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-15573.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	1.0	2.5	1.0	0.0	0.0	1.0
Merged-chr8-105698125-2	chr8	105697625	105698625	+	723.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001348349)	TTS (NM_001348349)	-3023.0	NM_001047436	56513.0	Mm.472753	NM_019695	ENSMUSG00000005699	Pard6a	0710008C04Rik|2610010A15Rik|PAR-6A|PAR6alpha|Par-6|Par6|Par6c|TAX40|Tip-40	par-6 family cell polarity regulator alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19091071-2	chr7	19090571	19091571	+	723.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_032418, intron 10 of 14)	intron (NM_032418, intron 10 of 14)	-3473.0	NM_011383	20475.0	Mm.3410	NM_011383	ENSMUSG00000040841	Six5	Dmahp|MDMAHP|TrexBF	sine oculis-related homeobox 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27236353-2	chr3	27235853	27236853	+	723.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 3 of 4)	PB1D9|SINE|Alu	53349.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-90496448-1	chr6	90495948	90496948	+	723.0	f0_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	33872.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-153565726-1	chr3	153565226	153566226	+	723.0	f0_balb.idr	intron (NM_011372, intron 1 of 4)	intron (NM_011372, intron 1 of 4)	159407.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-37022863-2	chr6	37022363	37023363	+	723.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 15 of 32)	B3A|SINE|B2	-212684.0	NM_008973	19242.0	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136395820-1	chr5	136395320	136396320	+	723.0	f1_balb.idr	intron (NM_001291238, intron 3 of 22)	intron (NM_001291238, intron 3 of 22)	-20017.0	NR_030500	723975.0		NR_030500	ENSMUSG00000106479	Mir721	Mirn721|miRY|mir-721|mmu-mir-721	microRNA 721	ncRNA	0.0	0.0	2.0	2.0	1.5	1.5
Merged-chr8-117431052-2	chr8	117430552	117431552	+	723.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 8 of 20)	intron (NM_028941, intron 8 of 20)	-21971.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4612666-2	chr19	4612166	4613166	+	723.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153388, intron 2 of 2)	intron (NM_153388, intron 2 of 2)	3001.0	NM_153388	225875.0	Mm.329675	NM_153388	ENSMUSG00000045045	Lrfn4	BC023156|Salm3	leucine rich repeat and fibronectin type III domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-87140628-1	chr14	87140128	87141128	+	723.0	f1_c57bl6.idr	intron (NM_019670, intron 1 of 27)	intron (NM_019670, intron 1 of 27)	596.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	4.0	4.0	7.5	5.0	5.5	21.0
Merged-chr10-118041644-1	chr10	118041144	118042144	+	723.0	f0_balb.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-100143.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	3.0	1.5	3.5	11.0	19.5	30.0
Merged-chr7-64223400-2	chr7	64222906	64223906	+	723.0	f0_balb.idr|f0_c57.idr	intron (NM_001039104, intron 13 of 26)	intron (NM_001039104, intron 13 of 26)	17600.0	NR_029805	387207.0		NR_029805	ENSMUSG00000065585	Mir211	Mirn211|mir-211|mmu-mir-211	microRNA 211	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-65396256-3	chr2	65395756	65396756	+	723.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31856.0	NR_105755	102466151.0		NR_105755	ENSMUSG00000099184	Mir6337	Gm27877|mmu-mir-6337	microRNA 6337	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78175769-2	chr15	78175269	78176269	+	723.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1661.0	NM_025931	67042.0	Mm.30191	NM_025931	ENSMUSG00000016637	Ift27	2600013G09Rik|Rabl4	intraflagellar transport 27	protein-coding	0.0	0.0	6.0	2.0	6.0	1.0
Merged-chr4-32365624-2	chr4	32365124	32366124	+	723.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51811.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142469272-2	chr5	142468772	142469772	+	723.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172725, intron 6 of 16)	intron (NM_172725, intron 6 of 16)	5341.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47077449-1	chr14	47076949	47077949	+	723.0	f1_c57bl6.idr	intron (NM_001037221, intron 7 of 12)	intron (NM_001037221, intron 7 of 12)	8472.0	NM_001310544	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	4.0	3.0	7.0	1.0	10.5	0.5
Merged-chr3-152602963-2	chr3	152602463	152603463	+	723.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355635, intron 6 of 8)	intron (NM_001355635, intron 6 of 8)	-63950.0	NR_040386	99542.0	Mm.394921	NR_040386	ENSMUSG00000097745	AI115009	-	expressed sequence AI115009	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117199835-2	chr8	117199335	117200335	+	723.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081151, intron 9 of 10)	intron (NM_001081151, intron 9 of 10)	41700.0	NM_001081151	209239.0	Mm.132992	NM_001081151	ENSMUSG00000052557	Gan	A330045G18|gigaxonin	giant axonal neuropathy	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78875611-1	chr15	78875111	78876111	+	723.0	f1_c57bl6.idr	Intergenic	Intergenic	-1579.0	NM_145929	106039.0	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	10.5	4.0	14.0	2.0	11.5	0.0
Merged-chr1-164059529-3	chr1	164059027	164060027	+	723.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-2549.0	NM_001164059	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47406346-2	chr19	47405846	47406846	+	723.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 2 of 14)	intron (NM_008018, intron 2 of 14)	58065.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	9.5	10.5	11.5	6.5	7.5	22.0
Merged-chr13-9430133-3	chr13	9429610	9430610	+	723.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	153585.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-93816170-2	chr11	93815675	93816675	+	723.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	69591.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	2.0	3.0	3.0	2.5	0.0	1.5
Merged-chr11-6390590-2	chr11	6390090	6391090	+	723.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4535.0	NM_001005867	52915.0	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49048584-2	chr7	49048084	49049084	+	723.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	89511.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-8681350-2	chr5	8680850	8681850	+	723.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011076, intron 6 of 29)	Lx8|LINE|L1	-58398.0	NM_198620	242819.0	Mm.332192	NM_198620	ENSMUSG00000040570	Rundc3b	Gm440	RUN domain containing 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24132541-2	chr10	24132041	24133041	+	723.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16748.0	NM_001358563	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137877959-2	chr5	137877459	137878459	+	723.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6201.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5677272-2	chr19	5676772	5677772	+	723.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_144868, exon 20 of 35)	exon (NM_144868, exon 20 of 35)	1804.0	NR_105953	102465596.0		NR_105953	ENSMUSG00000098568	Mir6987	Gm27891|mmu-mir-6987	microRNA 6987	ncRNA	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr17-35834578-2	chr17	35834078	35835078	+	723.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011655, exon 4 of 4)	3' UTR (NM_011655, exon 4 of 4)	3723.0	NM_011655	22154.0	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	9.5	2.0	0.0	11.5	5.5	3.0
Merged-chr19-16123297-1	chr19	16122797	16123797	+	723.0	f0_c57.idr	Intergenic	Lx8|LINE|L1	-9534.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	3.5	25.0	21.5	3.5	22.5	35.5
Merged-chr3-101775971-3	chr3	101775476	101776476	+	723.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	60247.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-109474627-2	chr7	109474127	109475127	+	723.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170913, intron 9 of 19)	B4A|SINE|B4	19111.0	NM_001170913	330627.0	Mm.183528	NM_181853	ENSMUSG00000031026	Trim66	Kiaa0298-hp|Tif1d	tripartite motif-containing 66	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54520481-4	chr11	54519987	54520987	+	723.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2358.0	NM_001252494	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65141648-2	chr9	65141148	65142148	+	723.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357257, intron 1 of 13)	CpG	494.0	NM_001357257	19289.0	Mm.41529	NM_008988	ENSMUSG00000032394	Igdcc3	2810401C09Rik|AI851425|Punc|WI-14920	immunoglobulin superfamily, DCC subclass, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-130061796-2	chr3	130061296	130062296	+	723.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207209)	promoter-TSS (NM_207209)	-889.0	NM_207209	99683.0	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105353190-1	chr4	105352690	105353690	+	723.0	f0_balb.idr	Intergenic	Intergenic	195843.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134981851-2	chr6	134981352	134982352	+	723.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001109914)	promoter-TSS (NM_001109914)	-149.0	NM_001109914	381823.0	Mm.296104	NM_001109914	ENSMUSG00000090698	Apold1	Gm1075	apolipoprotein L domain containing 1	protein-coding	0.0	5.0	3.0	1.0	0.0	0.0
Merged-chr14-29981096-2	chr14	29980596	29981596	+	723.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027493, intron 1 of 12)	B3A|SINE|B2	2759.0	NM_027493	56249.0	Mm.215110	NM_027493	ENSMUSG00000015971	Actr8	5730542K05Rik|ARP8	ARP8 actin-related protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23704350-2	chr13	23703849	23704849	+	723.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010424, exon 6 of 6)	3' UTR (NM_010424, exon 6 of 6)	-5891.0	NM_178208	319155.0	Mm.261662	NM_178208	ENSMUSG00000060678	Hist1h4c	-	histone cluster 1, H4c	protein-coding	20.0	38.0	13.5	4.0	19.5	4.0
Merged-chr13-28557401-1	chr13	28556901	28557901	+	723.0	f0_balb.idr	intron (NR_045053, intron 7 of 8)	ORR1E|LTR|ERVL-MaLR	153472.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-53996030-2	chr5	53995530	53996530	+	723.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2493.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-135245767-1	chr6	135245267	135246267	+	723.0	f1_balb.idr	intron (NM_001080553, intron 1 of 5)	AmnSINE1|SINE|Deu	2117.0	NM_001080552	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	3.0	1.0	1.0	11.5	12.0	1.0
Merged-chr13-28123378-2	chr13	28122878	28123878	+	723.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19106.0	NM_023746	28078.0	Mm.155058	NM_023746	ENSMUSG00000017064	Prl5a1	1600013P04Rik|D13Wsu14e|Ghd24|PLP-L|Prlpl	prolactin family 5, subfamily a, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64604393-2	chr1	64603893	64604893	+	723.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009952, exon 9 of 9)	3' UTR (NM_009952, exon 9 of 9)	12775.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149845855-2	chr4	149845355	149846355	+	723.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71588.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0.0	3.5	0.0	3.0	0.0	0.0
Merged-chr10-60730446-3	chr10	60729959	60730959	+	723.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 3 of 5)	intron (NM_023596, intron 3 of 5)	22323.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13440649-3	chr16	13440147	13441147	+	723.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8876.0	NR_030549	100124432.0		NR_030549	ENSMUSG00000076972	Mir193b	Mir193|Mirn193b|mir-193b	microRNA 193b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43303311-3	chr17	43302812	43303812	+	723.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133776, intron 8 of 15)	intron (NM_133776, intron 8 of 15)	32965.0	NM_133776	77596.0	Mm.159950	NM_133776	ENSMUSG00000041293	Adgrf1	5031409J19Rik|Gpr110|KPG_009	adhesion G protein-coupled receptor F1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119112350-2	chr4	119111852	119112852	+	723.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011400, intron 1 of 9)	intron (NM_011400, intron 1 of 9)	3607.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	0.0	2.5	0.0	0.0	7.5	0.0
Merged-chr17-87246558-1	chr17	87246058	87247058	+	723.0	f1_balb.idr	Intergenic	Intergenic	19389.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	77.5	271.0	145.0	105.0	209.5	132.5
Merged-chr15-83440460-2	chr15	83439960	83440960	+	723.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358643, intron 1 of 9)	intron (NM_001358643, intron 1 of 9)	7420.0	NM_001358644	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-108768710-1	chr4	108768210	108769210	+	723.0	f0_balb.idr	intron (NM_001347163, intron 1 of 18)	LTR16B1|LTR|ERVL	12378.0	NM_001347163	230597.0	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	3.5	6.5	5.0	3.5	15.5	4.0
Merged-chr5-147825798-4	chr5	147825299	147826299	+	722.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34829.0	NM_025624	66537.0	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-33169244-3	chr9	33168736	33169736	+	722.922241	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-240270.0	NR_131058	330917.0	Mm.488283	NR_131058		Gm27162	A430016B06	predicted gene 27162	ncRNA	0.0	1.5	16.5	1.0	2.5	11.0
Merged-chr12-72361154-2	chr12	72360654	72361654	+	722.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_153457, intron 1 of 8)	intron (NM_153457, intron 1 of 8)	47900.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-84713234-3	chr16	84712711	84713711	+	722.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029565)	promoter-TSS (NR_029565)	188.0	NR_132106	100653389.0	Mm.261808	NR_132106	ENSMUSG00000097418	Mir155hg	Bic|Gm26667	Mir155 host gene (non-protein coding)	ncRNA	0.0	0.0	3.0	0.0	4.0	0.0
Merged-chr6-38808449-3	chr6	38807950	38808950	+	722.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 2 of 14)	intron (NM_010433, intron 2 of 14)	28861.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75593422-3	chr10	75592875	75593875	+	722.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359425, intron 1 of 7)	intron (NM_001359425, intron 1 of 7)	3994.0	NR_153110	23887.0	Mm.257927	NM_011820	ENSMUSG00000006344	Ggt5	AI551243|GGL|GGT-REL|Ggtla1	gamma-glutamyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158142073-2	chr2	158141573	158142573	+	722.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 2 of 12)	intron (NM_009373, intron 2 of 12)	4319.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141615629-2	chr4	141615092	141616092	+	722.875	f1_balb.idr|f1_c57bl6.idr	TTS (NR_033566)	TTS (NR_033566)	1222.0	NR_033566	100165.0	Mm.439819	NR_033566	ENSMUSG00000073731	AI507597	-	expressed sequence AI507597	ncRNA	9.5	3.0	4.5	0.0	1.0	4.0
Merged-chr6-49262590-4	chr6	49262012	49263012	+	722.854187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362188, intron 1 of 8)	intron (NM_001362188, intron 1 of 8)	1540.0	NM_001347209	101214.0	Mm.196598	NM_198102	ENSMUSG00000029817	Tra2a	1500010G04Rik|AL022798|G430041M01Rik|mAWMS1	transformer 2 alpha	protein-coding	25.0	21.0	29.0	21.0	27.0	18.5
Merged-chr8-70708358-2	chr8	70707858	70708858	+	722.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10185.0	NM_001195253	100502950.0	Mm.52981	NM_001195253	ENSMUSG00000095026	Gm3336	100041434|2410018E23Rik	predicted gene 3336	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86754029-2	chr11	86753529	86754529	+	722.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	3538.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-110051112-2	chr4	110050612	110051612	+	722.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	73087.0	NM_172296	242620.0	Mm.32825	NM_172296	ENSMUSG00000047143	Dmrta2	Dmrt5	doublesex and mab-3 related transcription factor like family A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137031681-2	chr5	137031181	137032181	+	722.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001039385, exon 2 of 2)	exon (NM_001039385, exon 2 of 2)	1386.0	NM_001039385	381677.0	Mm.389697	NM_001039385	ENSMUSG00000037428	Vgf	Gm1052	VGF nerve growth factor inducible	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31147550-2	chr2	31147050	31148050	+	722.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	4741.0	NR_040334	320973.0	Mm.384284	NR_040334		D330023K18Rik	-	RIKEN cDNA D330023K18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5937665-2	chr17	5937165	5938165	+	722.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3615.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80305590-2	chr10	80305090	80306090	+	722.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_011789, exon 7 of 14)	exon (NM_011789, exon 7 of 14)	3770.0	NM_011789	23805.0	Mm.57247	NM_011789	ENSMUSG00000020135	Apc2	AI852447|APCL|R75424	adenomatosis polyposis coli 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127568349-2	chr10	127567815	127568815	+	722.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 38 of 88)	intron (NM_008512, intron 38 of 88)	-33756.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.0	0.0	5.5	0.0	3.0	0.0
Merged-chr7-143696404-3	chr7	143695914	143696914	+	722.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199227, intron 14 of 21)	B3|SINE|B2	-10539.0	NR_131763	79201.0	Mm.290780	NM_024290	ENSMUSG00000037613	Tnfrsf23	SOB|TNFRSFH23|Tnfrh1|Tnfrsf1al1|mDcTRAILR1|mSOB	tumor necrosis factor receptor superfamily, member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6552541-2	chr19	6552041	6553041	+	722.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9471.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-133382262-3	chr1	133381786	133382786	+	722.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011439)	TTS (NM_011439)	18714.0	NM_175443	214253.0	Mm.52111	NM_175443	ENSMUSG00000070644	Etnk2	4933417N20Rik|AI197444|EKI 2|Eki2|Tuc1	ethanolamine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-105483069-2	chr9	105482588	105483588	+	722.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253831, intron 1 of 26)	B3|SINE|B2	12045.0	NM_175025	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	13.5	37.5	29.0	6.0	52.5	22.0
Merged-chr15-62389533-2	chr15	62389045	62390045	+	722.75	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-170094.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	2.0	1.0	3.0	4.0	0.0	5.0
Merged-chr10-80132881-2	chr10	80132381	80133381	+	722.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_036582, intron 10 of 10)	intron (NR_036582, intron 10 of 10)	4506.0	NM_001195268	100503659.0	Mm.485395	NM_015761	ENSMUSG00000035640	Cbarp	9630008F14|Dos|R29144/1	calcium channel, voltage-dependent, beta subunit associated regulatory protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57523401-2	chr9	57522901	57523901	+	722.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_007747, intron 1 of 4)	intron (NM_007747, intron 1 of 4)	2169.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32688983-1	chr16	32688483	32689483	+	722.75	f0_balb.idr	Intergenic	Intergenic	15829.0	NM_001289443	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-26565015-2	chr19	26564515	26565515	+	722.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40145.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0.0	0.0	1.0	2.5	0.0	1.0
Merged-chr7-118994115-2	chr7	118993615	118994615	+	722.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_022420, intron 1 of 3)	intron (NM_022420, intron 1 of 3)	1096.0	NM_022420	64297.0	Mm.103439	NM_022420	ENSMUSG00000008734	Gprc5b	AW125761|Raig2	G protein-coupled receptor, family C, group 5, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-19818219-3	chr14	19817769	19818769	+	722.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026528, intron 3 of 7)	intron (NM_026528, intron 3 of 7)	5554.0	NM_026528	68045.0	Mm.21932	NM_026528	ENSMUSG00000021807	Rtraf	2700060E02Rik	RNA transcription, translation and transport factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46773969-2	chr17	46773469	46774469	+	722.6999509999999	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025966)	TTS (NM_025966)	1334.0	NM_025966	67101.0	Mm.358702	NM_025966	ENSMUSG00000062619	2310039H08Rik	-	RIKEN cDNA 2310039H08 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-13997979-3	chr14	13997467	13998467	+	722.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-14524.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38810504-3	chr6	38809994	38810994	+	722.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 2 of 14)	B1F|SINE|Alu	26817.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10987582-3	chr16	10987093	10988093	+	722.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	5528.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73427130-3	chr2	73426622	73427622	+	722.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26767.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-55415524-3	chr6	55415069	55416069	+	722.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	18682.0	NR_046179	330324.0	Mm.113703	NR_046179	ENSMUSG00000108228	6430584L05Rik	6430584L05	RIKEN cDNA 6430584L05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-23797003-3	chr10	23796531	23797531	+	722.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358812)	promoter-TSS (NM_001358812)	45.0	NM_001358812	76306.0	Mm.294271	NM_183116	ENSMUSG00000037455	Slc18b1	1110021L09Rik	solute carrier family 18, subfamily B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37049241-3	chr19	37048768	37049768	+	722.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198300, intron 9 of 10)	intron (NM_198300, intron 9 of 10)	123189.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88597822-2	chr17	88597322	88598322	+	722.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28733.0	NM_029858	77057.0	Mm.482203	NM_029858	ENSMUSG00000033855	Ston1	4921524J06Rik|C86231|Salf|Sblf	stonin 1	protein-coding	3.5	4.0	4.0	0.0	9.0	0.0
Merged-chr9-14765631-2	chr9	14765131	14766131	+	722.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_029306, intron 2 of 3)	intron (NM_029306, intron 2 of 3)	5399.0	NM_029306	69325.0	Mm.440453	NM_029306	ENSMUSG00000031927	1700012B09Rik	1700007P19Rik	RIKEN cDNA 1700012B09 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74437029-2	chr1	74436529	74437529	+	722.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001310662, exon 24 of 24)	3' UTR (NM_001310662, exon 24 of 24)	27645.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136144700-2	chr1	136144200	136145200	+	722.666626	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153829, exon 2 of 36)	non-coding (NR_153829, exon 2 of 36)	13310.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155485795-2	chr4	155485295	155486295	+	722.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5566.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-25807465-2	chr6	25806965	25807965	+	722.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_133931, intron 1 of 17)	intron (NM_133931, intron 1 of 17)	1761.0	NM_133931	101185.0	Mm.274589	NM_133931	ENSMUSG00000029676	Pot1a	1500031H18Rik|AI851169|Pot1	protection of telomeres 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38640799-3	chr6	38640325	38641325	+	722.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3586.0	NM_001033171	74253.0	Mm.121859	NM_001033171	ENSMUSG00000071537	Klrg2	2310020F24Rik	killer cell lectin-like receptor subfamily G, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102370362-3	chr12	102369849	102370849	+	722.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 6 of 9)	YREP_Mm|Unknown|Unknown	69464.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	4.0	5.5	7.5	2.0	3.5	9.0
Merged-chr19-53257193-3	chr19	53256730	53257730	+	722.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2025.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80195461-10	chr18	80194944	80195944	+	722.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199197, intron 3 of 5)	intron (NM_199197, intron 3 of 5)	5175.0	NM_199197	68731.0	Mm.186936	NM_199197	ENSMUSG00000024570	Rbfa	1110032A13Rik|AI595940	ribosome binding factor A	protein-coding	13.0	49.5	20.0	8.0	50.0	36.0
Merged-chr11-110479249-4	chr11	110478754	110479754	+	722.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356346)	promoter-TSS (NM_001356346)	-86.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	17.0	26.5	24.5	2.0	10.0	5.0
Merged-chr2-132229943-5	chr2	132229513	132230513	+	722.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17775.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80140980-2	chr7	80140512	80141512	+	722.516663	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25662.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19199805-2	chr10	19199305	19200305	+	722.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_038021, intron 3 of 3)	L3|LINE|CR1	32567.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156540354-3	chr1	156539848	156540848	+	722.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18439.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	0.0	0.0	6.5	2.0	3.0	4.0
Merged-chr8-4494982-2	chr8	4494482	4495482	+	722.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026058, intron 1 of 10)	(TTTTC)n|Simple_repeat|Simple_repeat	1577.0	NM_026058	67260.0	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	3.5	1.5	0.0	3.5	1.5	0.0
Merged-chr13-46259616-2	chr13	46259116	46260116	+	722.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-14105.0	NM_001005422	380842.0	Mm.188108	NM_001005422	ENSMUSG00000063529	Stmnd1	Gm1574	stathmin domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92901025-2	chr16	92900525	92901525	+	722.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74951.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109302496-2	chr11	109301996	109302996	+	722.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4315.0	NM_011268	19739.0	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding	6.5	0.0	4.5	0.0	4.0	0.5
Merged-chr4-133750342-2	chr4	133749842	133750842	+	722.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080819, intron 1 of 19)	intron (NM_001080819, intron 1 of 19)	3269.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	5.5	22.5	13.5	14.5	24.5	18.0
Merged-chr10-78236896-2	chr10	78236396	78237396	+	722.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081055, intron 1 of 22)	intron (NM_001081055, intron 1 of 22)	7746.0	NM_001081055	216131.0	Mm.27539	NM_001081055	ENSMUSG00000000374	Trappc10	B230307C21Rik|Gm870|Tmem1|b2b2416Clo|b2b2613Clo	trafficking protein particle complex 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-12925767-2	chr7	12925267	12926267	+	722.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009095, exon 4 of 6)	exon (NM_009095, exon 4 of 6)	-1649.0	NM_029809	381845.0	Mm.439896	NM_029809	ENSMUSG00000033967	Rnf225	2310014L17Rik|AV237412|C77118	ring finger protein 225	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-19908026-2	chr5	19907526	19908526	+	722.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015823, intron 1 of 21)	intron (NM_015823, intron 1 of 21)	508.0	NM_015823	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105272588-2	chr8	105272088	105273088	+	722.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045689, intron 8 of 12)	intron (NR_045689, intron 8 of 12)	2787.0	NM_001256044	26386.0	Mm.89204	NM_011939	ENSMUSG00000033249	Hsf4	HSF 4|HSTF 4|HSTF4|ldis1|mHSF4	heat shock transcription factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88377384-2	chr10	88376884	88377884	+	722.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41B|LTR|ERVL	-2028.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145256113-1	chr7	145255613	145256613	+	722.5	f1_c57bl6.idr	intron (NR_132644, intron 22 of 24)	intron (NR_132644, intron 22 of 24)	27898.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	2.5	2.5	3.0	2.0	3.5	1.0
Merged-chr2-105666795-2	chr2	105666295	105667295	+	722.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_002867, intron 1 of 3)	intron (NR_002867, intron 1 of 3)	-2101.0	NM_001244198	18508.0	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-114788925-2	chr9	114788457	114789457	+	722.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027294)	TTS (NM_027294)	-6964.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	31.5	41.0	53.0	18.5	14.5	12.5
Merged-chr8-88669779-2	chr8	88669275	88670275	+	722.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 4 of 12)	intron (NM_145857, intron 4 of 12)	22428.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	26.5	57.0	42.0	17.0	27.5	45.5
Merged-chr13-110605274-2	chr13	110604775	110605775	+	722.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	210231.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0.5	4.0	1.0	2.5	5.0	1.5
Merged-chr19-41105149-2	chr19	41104672	41105672	+	722.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011904, intron 11 of 20)	intron (NM_011904, intron 11 of 20)	-28059.0	NM_153520	226115.0	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	9.0	23.0	19.5	8.0	11.5	24.0
Merged-chr16-91476843-2	chr16	91476343	91477343	+	722.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8372.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126721806-3	chr8	126721307	126722307	+	722.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127213.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8872220-2	chr19	8871720	8872720	+	722.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001362044, exon 4 of 9)	exon (NM_001362044, exon 4 of 9)	672.0	NM_001362044	225896.0	Mm.27839	NM_146093	ENSMUSG00000071655	Ubxn1	2B28|4930455J02Rik|D19Ertd721e|T25529|mY33K	UBX domain protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118658075-2	chr9	118657575	118658575	+	722.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 5 of 27)	B1F2|SINE|Alu	51366.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	9.5	7.0	10.5	9.5	5.0
Merged-chr11-6525851-2	chr11	6525351	6526351	+	722.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045893, intron 3 of 3)	intron (NR_045893, intron 3 of 3)	2909.0	NR_045893	100041286.0	Mm.459507	NR_045893	ENSMUSG00000085156	Snhg15	Gm11974	small nucleolar RNA host gene 15	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-146498027-2	chr4	146497527	146498527	+	722.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-3973.0	NM_001243138	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-6937318-3	chr7	6936838	6937838	+	722.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360502, intron 5 of 7)	intron (NM_001360502, intron 5 of 7)	39324.0	NR_036631	116811.0	Mm.381671	NR_036631	ENSMUSG00000108043	Zim3	1700128I23Rik	zinc finger, imprinted 3	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56010486-2	chr17	56009986	56010986	+	722.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026530, exon 3 of 13)	exon (NM_026530, exon 3 of 13)	1285.0	NM_026530	68047.0	Mm.358710	NM_026530	ENSMUSG00000003199	Mpnd	E130307M08Rik	MPN domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-47186369-2	chr13	47185869	47186869	+	722.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 1 of 7)	intron (NM_146042, intron 1 of 7)	-7634.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98819567-2	chr7	98819067	98820067	+	722.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15545.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131489034-2	chr2	131488534	131489534	+	722.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2828.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-119386188-2	chr6	119385688	119386688	+	722.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_197985, intron 1 of 7)	PB1D7|SINE|Alu	2546.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-16169800-2	chr4	16169300	16170300	+	722.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045765, intron 1 of 6)	MER90a|LTR|ERV1	5690.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44259238-2	chr9	44258738	44259738	+	722.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178420, intron 6 of 9)	intron (NM_178420, intron 6 of 9)	-7774.0	NM_133226	170761.0	Mm.29872	NM_133226	ENSMUSG00000032105	Pdzd3	NaPi-Cap2|Pdzk2	PDZ domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121103541-2	chr8	121103041	121104041	+	722.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172761, intron 4 of 7)	intron (NM_172761, intron 4 of 7)	4838.0	NM_172761	234814.0	Mm.31690	NM_172761	ENSMUSG00000031816	Mthfsd	AW049977|BC052066|C920004D05	methenyltetrahydrofolate synthetase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-76267498-2	chr6	76266998	76267998	+	722.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-974979.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	6.5	8.5	12.0	23.5	32.5	17.0
Merged-chr6-85381427-2	chr6	85380927	85381927	+	722.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6793.0	NM_001003955	52055.0	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32364037-2	chr2	32363537	32364537	+	722.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252536, intron 3 of 18)	intron (NM_001252536, intron 3 of 18)	839.0	NM_028412	68379.0	Mm.170508	NM_028412	ENSMUSG00000039205	Ciz1	0610038H21Rik|2900056O04Rik|LSFR1|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-40697791-2	chr11	40697291	40698291	+	722.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2588.0	NM_001199274	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-76240705-2	chr18	76240210	76241210	+	722.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010754)	promoter-TSS (NM_010754)	-991.0	NM_010754	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	15.0	15.0	0.5	6.0	22.0	26.5
Merged-chr2-153140183-2	chr2	153139683	153140683	+	722.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 10 of 12)	L2c|LINE|L2	-21118.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58094537-3	chr11	58094066	58095066	+	722.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9404.0	NM_026949	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	3.5	39.0	15.5	21.5	91.5	49.0
Merged-chr18-62976055-2	chr18	62975555	62976555	+	722.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-1861.0	NM_028017	108123.0	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	0.0	4.0	1.5	4.5	0.0	0.0
Merged-chr7-143650071-2	chr7	143649571	143650571	+	722.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023680)	promoter-TSS (NM_023680)	-407.0	NM_023680	79202.0	Mm.261384	NM_023680	ENSMUSG00000010751	Tnfrsf22	2810028K06Rik|C130035G06Rik|SOBa|Tnfrh2|Tnfrsf1al2|mDcTrailr2	tumor necrosis factor receptor superfamily, member 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-3008505-2	chr9	3008005	3009005	+	722.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	30238.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13469534-3	chr9	13469062	13470062	+	722.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38201.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	10.5	20.0	4.0	9.5	3.0	11.5
Merged-chr1-36589225-3	chr1	36588742	36589742	+	722.43335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 10 of 14)	intron (NM_001126046, intron 10 of 14)	4090.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77917363-4	chr15	77916833	77917833	+	722.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019913, intron 3 of 3)	intron (NM_019913, intron 3 of 3)	11661.0	NM_019913	56551.0	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94388102-2	chr11	94387602	94388602	+	722.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	4874.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	3.0	3.0	7.5	5.0	20.5	7.5
Merged-chr18-12948427-2	chr18	12947927	12948927	+	722.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-6586.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103026287-2	chr11	103025787	103026787	+	722.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2256.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118101394-3	chr14	118100893	118101893	+	722.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6-int|LTR|ERVK	31372.0	NM_029578	76355.0	Mm.251537	NM_029578	ENSMUSG00000022130	Tgds	2610017J16Rik|2610025M23Rik|AI648925	TDP-glucose 4,6-dehydratase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119834046-3	chr8	119833513	119834513	+	722.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	(TG)n|Simple_repeat|Simple_repeat	6566.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125783606-3	chr8	125783105	125784105	+	722.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175561, intron 25 of 33)	intron (NM_175561, intron 25 of 33)	49402.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131983140-4	chr1	131982652	131983652	+	722.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145977)	TTS (NM_145977)	12543.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31082561-2	chr5	31082037	31083037	+	722.291626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10990.0	NM_011773	22784.0	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	0.0	7.0	1.0	6.0	1.0	0.0
Merged-chr1-9906013-3	chr1	9905509	9906509	+	722.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2629.0	NM_177722	240697.0	Mm.259800	NM_177722	ENSMUSG00000046101	Mcmdc2	6030422M02Rik	minichromosome maintenance domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16809659-2	chr1	16809159	16810159	+	722.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121203.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60774576-2	chr11	60774076	60775076	+	722.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009410, intron 1 of 18)	intron (NM_009410, intron 1 of 18)	2789.0	NM_009410	21975.0	Mm.10708	NM_009410	ENSMUSG00000002814	Top3a	-	topoisomerase (DNA) III alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-81675005-2	chr4	81674505	81675505	+	722.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-187992.0	NR_030570	100124446.0		NR_030570	ENSMUSG00000077941	Mir466h	Mirn466h	microRNA 466h	ncRNA	0.0	0.0	0.0	0.0	4.0	0.5
Merged-chr6-24662059-2	chr6	24661559	24662559	+	722.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_028459, intron 1 of 10)	(ACTG)n|Simple_repeat|Simple_repeat	2936.0	NM_001167745	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-66004807-3	chr3	66004320	66005320	+	722.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46571.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	2.5	11.5	6.5	5.5	1.0	3.0
Merged-chr17-5637709-2	chr17	5637209	5638209	+	722.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	C-rich|Low_complexity|Low_complexity	145109.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57651923-2	chr9	57651423	57652423	+	722.166626	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001304761, exon 2 of 15)	5' UTR (NM_001304761, exon 2 of 15)	1708.0	NM_001304761	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-83950063-2	chr10	83949563	83950563	+	722.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTA)n|Simple_repeat|Simple_repeat	150634.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20795874-2	chr14	20795374	20796374	+	722.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_153779, intron 1 of 1)	intron (NR_153779, intron 1 of 1)	1635.0	NR_153779	102631887.0	Mm.122292	NR_153779	ENSMUSG00000114241	Gm30108	-	predicted gene, 30108	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-108077553-2	chr4	108077053	108078053	+	722.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011327, intron 10 of 15)	MERV1_LTR|LTR|ERV1	-9804.0	NR_105823	102465213.0		NR_105823	ENSMUSG00000098980	Mir6397	Gm28004|mmu-mir-6397	microRNA 6397	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134698719-2	chr1	134698219	134699219	+	722.133301	f1_balb.idr|f1_c57bl6.idr	intron (NM_009307, intron 2 of 9)	intron (NM_009307, intron 2 of 9)	-10581.0	NM_001355726	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96267789-3	chr10	96267306	96268306	+	722.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41599.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-19969320-3	chr14	19968806	19969806	+	722.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285908, intron 1 of 3)	intron (NM_001285908, intron 1 of 3)	7387.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-94532945-3	chr1	94532444	94533444	+	722.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-264498.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-89500126-3	chr7	89499586	89500586	+	722.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17500.0	NM_029614	76453.0	Mm.250438	NM_029614	ENSMUSG00000039405	Prss23	2310046G15Rik|4930479H08Rik|AI790574|Spuve	protease, serine 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75677991-4	chr11	75677445	75678445	+	722.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1314.0	NM_001277219	12928.0	Mm.280125	NM_133656	ENSMUSG00000017776	Crk	Crk-I|Crk-II|Crk-III|Crk3|CrkIII|Crko|c-Crk|p38	v-crk avian sarcoma virus CT10 oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116031997-4	chr7	116031516	116032516	+	722.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152104)	promoter-TSS (NR_152104)	37.0	NR_152104	68469.0	Mm.435492	NR_152104		Sox6os	1110006G14Rik	SRY (sex determining region Y)-box 6, opposite strand	ncRNA	0.0	1.0	0.0	0.0	1.0	0.0
Merged-chr15-82040866-2	chr15	82040366	82041366	+	722.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011482)	TTS (NM_011482)	6732.0	NM_011482	20826.0	Mm.299312	NM_011482	ENSMUSG00000063480	Snu13	FA-1|Fta1|Nhp2l1|Ssfa1	SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5)	protein-coding	0.0	0.5	0.0	0.0	0.0	1.5
Merged-chr8-124186309-2	chr8	124185809	124186809	+	722.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45085.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	0.0	0.0	5.5	3.5	0.0	3.5
Merged-chr19-11293627-1	chr19	11293127	11294127	+	722.0	f1_balb.idr	intron (NR_045317, intron 2 of 2)	ERVB4_1B-I_MM-int|LTR|ERVK	-9814.0	NM_183190	269063.0	Mm.268940	NM_183190	ENSMUSG00000054523	Ms4a5	-	membrane-spanning 4-domains, subfamily A, member 5	protein-coding	60.0	106.5	90.0	30.0	89.0	84.5
Merged-chr11-97684152-2	chr11	97683652	97684652	+	722.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_139311, exon 20 of 20)	3' UTR (NM_139311, exon 20 of 20)	-1800.0	NM_001085500	217149.0	Mm.29659	NM_001085500	ENSMUSG00000078695	Cisd3	Mel-13|Mel13	CDGSH iron sulfur domain 3	protein-coding	22.0	32.5	27.5	10.5	15.5	22.5
Merged-chr17-34602050-2	chr17	34601550	34602550	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019403, intron 3 of 5)	intron (NM_019403, intron 3 of 5)	1511.0	NM_019403	54197.0	Mm.274542	NM_019403	ENSMUSG00000015478	Rnf5	2410131O05Rik|AA407576|NG2	ring finger protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-116986947-2	chr13	116986447	116987447	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	RSINE1|SINE|B4	38569.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	5.0	25.5	24.5	1.0	8.5	5.0
Merged-chr9-47580685-2	chr9	47580185	47581185	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	50333.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	2.0	9.5	3.0	19.0	6.5	6.0
Merged-chr15-102407333-2	chr15	102406833	102407833	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013672, intron 1 of 5)	PB1D7|SINE|Alu	1017.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119490786-2	chr11	119490286	119491286	+	722.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177394)	promoter-TSS (NM_177394)	449.0	NR_153849	78439.0	Mm.440446	NR_153849	ENSMUSG00000109408	A930037H05Rik	Gm44935	RIKEN cDNA A930037H05 gene	ncRNA	9.0	6.0	5.0	2.0	8.5	7.5
Merged-chr15-27679500-2	chr15	27679000	27680000	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	2042.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106303112-1	chr9	106302612	106303612	+	722.0	f1_c57bl6.idr	intron (NM_027354, intron 7 of 10)	intron (NM_027354, intron 7 of 10)	22051.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	4.0	7.5	0.5	0.0	8.0	2.0
Merged-chr5-64354900-3	chr5	64354417	64355417	+	722.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	113025.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	0.0	0.0	0.5	0.0	3.5	2.0
Merged-chr2-32287565-2	chr2	32287065	32288065	+	722.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133852)	promoter-TSS (NM_133852)	504.0	NR_110965	72931.0	Mm.27344	NM_175190	ENSMUSG00000044627	Swi5	1500019F05Rik|2900010J23Rik|AI046671	SWI5 recombination repair homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85680188-2	chr12	85679688	85680688	+	722.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(GGGA)n|Simple_repeat|Simple_repeat	-6532.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5498380-2	chr19	5497872	5498872	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362042, intron 3 of 11)	intron (NM_001362042, intron 3 of 11)	5415.0	NM_023781	75555.0	Mm.440432	NM_023781	ENSMUSG00000100937	1700020D05Rik	mage-g2	RIKEN cDNA 1700020D05 gene	protein-coding	0.0	0.0	1.0	0.0	0.0	0.5
Merged-chr7-97426815-1	chr7	97426315	97427315	+	722.0	f1_c57bl6.idr	Intergenic	Intergenic	-9265.0	NM_009381	21835.0	Mm.28585	NM_009381	ENSMUSG00000035686	Thrsp	S14|SPOT14	thyroid hormone responsive	protein-coding	3.0	0.0	0.0	2.5	0.0	0.5
Merged-chr6-122601387-1	chr6	122600887	122601887	+	722.0	f1_balb.idr	intron (NM_001134391, intron 1 of 7)	intron (NM_001134391, intron 1 of 7)	1057.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	158.0	408.0	243.5	70.5	252.5	143.0
Merged-chr2-32600279-2	chr2	32599779	32600779	+	722.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001276425)	TTS (NM_001276425)	570.0	NM_001025311	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122888583-2	chr8	122888083	122889083	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 9 of 12)	intron (NM_001081379, intron 9 of 12)	40209.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	3.0	0.0	0.5	3.0	1.0	2.5
Merged-chr13-18807848-2	chr13	18807348	18808348	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 7 of 28)	intron (NM_172120, intron 7 of 28)	90556.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-14904673-2	chr17	14904173	14905173	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175173, intron 17 of 24)	intron (NM_175173, intron 17 of 24)	38451.0	NM_175173	71682.0	Mm.122698	NM_175173	ENSMUSG00000046991	Wdr27	0610012K18Rik	WD repeat domain 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64309245-1	chr13	64308745	64309745	+	722.0	f0_balb.idr	intron (NM_025370, intron 2 of 5)	intron (NM_025370, intron 2 of 5)	3465.0	NM_025370	66129.0	Mm.491110	NM_025370	ENSMUSG00000021482	Aaed1	1110018J18Rik|AI849003	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding	2.0	9.5	10.5	17.5	32.0	29.0
Merged-chr4-136649107-1	chr4	136648607	136649607	+	722.0	f1_c57bl6.idr	3' UTR (NM_001290753, exon 16 of 16)	3' UTR (NM_001290753, exon 16 of 16)	26486.0	NM_001243262	242707.0	Mm.448979	NM_001243262	ENSMUSG00000070683	Lactbl1	-	lactamase, beta-like 1	protein-coding	2.5	7.5	0.0	8.5	1.5	0.0
Merged-chr11-119166147-2	chr11	119165647	119166647	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347625, intron 3 of 11)	L1MB3|LINE|L1	-12010.0	NR_105899	102465563.0		NR_105899	ENSMUSG00000098704	Mir6934	Gm27523|mmu-mir-6934	microRNA 6934	ncRNA	10.0	0.0	1.0	10.0	0.0	1.0
Merged-chr16-53659624-2	chr16	53659124	53660124	+	722.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR9E|LTR|ERVK	-843880.0	NR_040495	73820.0	Mm.60493	NR_040495		4930404A05Rik	-	RIKEN cDNA 4930404A05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119047110-2	chr11	119046610	119047610	+	722.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6197.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133422920-1	chr4	133422420	133423420	+	722.0	f1_c57bl6.idr	3' UTR (NM_001358455, exon 12 of 12)	3' UTR (NM_001358455, exon 12 of 12)	53144.0	NR_039582	100628620.0		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	3.0	4.0	11.0	5.0	4.0	1.5
Merged-chr5-114925706-1	chr5	114925206	114926206	+	722.0	f1_balb.idr	intron (NM_001359946, intron 1 of 4)	intron (NM_001359946, intron 1 of 4)	2466.0	NM_001359945	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	28.5	71.0	34.5	42.0	79.5	59.0
Merged-chr9-107630790-1	chr9	107630290	107631290	+	722.0	f1_c57bl6.idr	intron (NM_008138, intron 1 of 8)	intron (NM_008138, intron 1 of 8)	4552.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	13.0	25.5	14.0	9.0	15.0	13.5
Merged-chr7-141629547-2	chr7	141629047	141630047	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357068, intron 18 of 21)	intron (NM_001357068, intron 18 of 21)	8846.0	NR_106030	102466798.0		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70505870-2	chr8	70505389	70506389	+	722.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_025577, exon 3 of 5)	exon (NM_025577, exon 3 of 5)	537.0	NR_151646	66462.0	Mm.28242	NM_025577	ENSMUSG00000058833	Rex1bd	2810428I15Rik	required for excision 1-B domain containing	protein-coding	6.5	34.5	24.0	18.0	21.0	16.0
Merged-chr3-52088105-2	chr3	52087605	52088605	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	16901.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-33935826-2	chr5	33935326	33936326	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011914, intron 1 of 10)	intron (NM_011914, intron 1 of 10)	432.0	NM_011914	24116.0	Mm.332320	NM_011914	ENSMUSG00000029111	Nelfa	Whsc2|Whsc2h	negative elongation factor complex member A, Whsc2	protein-coding	4.0	6.5	1.0	2.0	9.0	9.5
Merged-chr16-44757361-3	chr16	44756864	44757864	+	722.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-8372.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4566413-2	chr2	4565913	4566913	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 2 of 11)	intron (NM_001177844, intron 2 of 11)	6659.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-9536865-2	chr11	9536365	9537365	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 47 of 61)	intron (NM_178259, intron 47 of 61)	344923.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17628937-2	chr17	17628437	17629437	+	722.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB3_1-I_MM-int|LTR|ERVK	-4448.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr3-34020860-2	chr3	34020360	34021360	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113189, intron 1 of 16)	intron (NM_001113189, intron 1 of 16)	781.0	NM_001113189	14359.0	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	6.0	11.0	13.0	9.5	3.0	4.5
Merged-chr9-50607603-2	chr9	50607103	50608103	+	722.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001134902, exon 7 of 7)	exon (NM_001134902, exon 7 of 7)	3702.0	NM_013897	30057.0	Mm.335149	NM_013897	ENSMUSG00000039016	Timm8b	Tim8b	translocase of inner mitochondrial membrane 8B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-75794958-1	chr13	75794458	75795458	+	722.0	f1_balb.idr	Intergenic	B3A|SINE|B2	-44927.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	23.0	40.5	29.5	18.0	52.0	22.5
Merged-chr11-62746140-2	chr11	62745640	62746640	+	722.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17047.0	NM_133208	170740.0	Mm.339982	NM_133208	ENSMUSG00000005267	Zfp287	B230333C16Rik|SKAT-2|Skat2|Znf287|mszf16|mszf74	zinc finger protein 287	protein-coding	2.5	2.0	1.5	0.0	0.0	1.5
Merged-chr11-20926102-1	chr11	20925602	20926602	+	722.0	f0_balb.idr	Intergenic	Intergenic	-94994.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	2.0	2.0	5.5	5.0	25.5	16.0
Merged-chr19-29925028-3	chr19	29924516	29925516	+	722.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133775)	promoter-TSS (NM_133775)	-97.0	NM_133775	77125.0	Mm.182359	NM_133775	ENSMUSG00000024810	Il33	9230117N10Rik|Il-33|Il1f11|NF-HEV	interleukin 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168208765-2	chr2	168208265	168209265	+	722.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310084)	TTS (NM_001310084)	-1653.0	NM_001310088	11538.0	Mm.201322	NM_009628	ENSMUSG00000051149	Adnp	AA589558|mKIAA0784	activity-dependent neuroprotective protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-96922142-1	chr5	96921642	96922642	+	722.0	f1_balb.idr	intron (NR_131152, intron 2 of 2)	intron (NR_131152, intron 2 of 2)	870.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	166.5	334.5	254.0	128.0	241.0	174.0
Merged-chr16-37653684-2	chr16	37653184	37654184	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026610, intron 1 of 2)	intron (NM_026610, intron 1 of 2)	684.0	NM_026610	68194.0	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61290721-2	chr10	61290221	61291221	+	722.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7115.0	NM_011073	18646.0	Mm.240313	NM_011073	ENSMUSG00000037202	Prf1	Pfn|Pfp|Prf-1	perforin 1 (pore forming protein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34485324-2	chr5	34484824	34485824	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243123, intron 20 of 20)	intron (NM_001243123, intron 20 of 20)	28655.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136682535-2	chr1	136682035	136683035	+	722.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045324)	promoter-TSS (NR_045324)	-861.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61924643-2	chr11	61924143	61925143	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019921, intron 1 of 14)	L2|LINE|L2	5614.0	NM_019921	56697.0	Mm.274404	NM_019921	ENSMUSG00000047804	Akap10	1500031L16Rik|B130049N18Rik|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-110598081-2	chr13	110597581	110598581	+	722.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	203037.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-130994108-2	chr7	130993608	130994608	+	722.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37968.0	NM_001347632	12945.0	Mm.4138	NM_007769	ENSMUSG00000047517	Dmbt1	CRP|CRP-[a]|CRP-[b]|Crpd|DBMT1|gp300|p80	deleted in malignant brain tumors 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127482847-1	chr10	127482347	127483347	+	722.0	f1_c57bl6.idr	intron (NM_001359246, intron 14 of 23)	intron (NM_001359246, intron 14 of 23)	-18839.0	NM_001359751	237611.0	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	1.0	10.5	10.5	5.0	12.0	5.5
Merged-chr13-47214291-1	chr13	47213791	47214791	+	722.0	f0_balb.idr	intron (NM_146042, intron 2 of 7)	intron (NM_146042, intron 2 of 7)	20288.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45593906-2	chr7	45593410	45594410	+	722.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18734.0	NR_038165	71661.0	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69085962-2	chr8	69085462	69086462	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153054, intron 1 of 16)	intron (NM_153054, intron 1 of 16)	-2774.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	5.5	15.5	15.0	8.0	48.0	28.5
Merged-chr2-152114433-2	chr2	152113933	152114933	+	722.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8909.0	NM_029688	76650.0	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-81663143-1	chr17	81662643	81663643	+	722.0	f0_balb.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	75244.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44578243-1	chr19	44577743	44578743	+	722.0	f0_balb.idr	Intergenic	MIR|SINE|MIR	15389.0	NM_176958	319594.0	Mm.145278	NM_176958	ENSMUSG00000036450	Hif1an	2310046M24Rik|A830014H24Rik|FIH|FIH1	hypoxia-inducible factor 1, alpha subunit inhibitor	protein-coding	2.5	2.0	3.0	11.5	5.5	1.0
Merged-chr5-122726284-2	chr5	122725784	122726784	+	721.958374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310718, intron 8 of 10)	intron (NM_001310718, intron 8 of 10)	18740.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-4955379-4	chr6	4954878	4955878	+	721.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	52058.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91187620-4	chr2	91187020	91188020	+	721.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355279, intron 7 of 9)	intron (NM_001355279, intron 7 of 9)	-4473.0	NM_145527	228355.0	Mm.36410	NM_145527	ENSMUSG00000040687	Madd	9630059K23Rik|IG20	MAP-kinase activating death domain	protein-coding	16.5	8.0	16.0	6.5	11.0	19.0
Merged-chr19-12007072-2	chr19	12006572	12007572	+	721.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29668.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127658288-3	chr10	127657784	127658784	+	721.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009284, intron 17 of 21)	intron (NM_009284, intron 17 of 21)	8419.0	NM_001122895	17937.0	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	0.0	4.0	0.0	0.0	0.0	0.0
Merged-chr18-80984232-3	chr18	80983732	80984732	+	721.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178280, intron 1 of 3)	intron (NM_178280, intron 1 of 3)	2346.0	NM_178280	20689.0	Mm.215917	NM_178280	ENSMUSG00000024565	Sall3	B130022O04Rik|Msal|Msal-1|Sal|Salt|Spalt	spalt like transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120101210-3	chr2	120100712	120101712	+	721.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 4 of 5)	intron (NM_133838, intron 4 of 5)	53363.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41615614-3	chr13	41615107	41616107	+	721.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163572, intron 1 of 2)	intron (NM_001163572, intron 1 of 2)	9391.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11315372-2	chr16	11314872	11315872	+	721.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011608, intron 2 of 2)	intron (NM_011608, intron 2 of 2)	1563.0	NM_011608	21935.0	Mm.12935	NM_011608	ENSMUSG00000022496	Tnfrsf17	BCM|BCMA|Tnfrsf13|Tnfrsf13a	tumor necrosis factor receptor superfamily, member 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55581864-2	chr14	55581364	55582364	+	721.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011189)	TTS (NM_011189)	3370.0	NM_011189	19186.0	Mm.830	NM_011189	ENSMUSG00000022216	Psme1	AW413925|PA28a	proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95631614-2	chr3	95631114	95632114	+	721.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019561, exon 4 of 4)	3' UTR (NM_019561, exon 4 of 4)	6634.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75465161-2	chr11	75464661	75465661	+	721.833313	f1_balb.idr|f1_c57bl6.idr	intron (NR_030711, intron 2 of 2)	intron (NR_030711, intron 2 of 2)	1445.0	NR_029739	387141.0		NR_029739	ENSMUSG00000065529	Mir22	Mirn22|mmu-mir-22	microRNA 22	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45750221-3	chr13	45749705	45750705	+	721.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 4 of 6)	intron (NM_001199304, intron 4 of 6)	214786.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165328921-3	chr2	165328411	165329411	+	721.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2432.0	NM_207706	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-42075734-2	chr13	42075234	42076234	+	721.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	23713.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-36958122-3	chr8	36957578	36958578	+	721.799988	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CCCCCA)n|Simple_repeat|Simple_repeat	-5636.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	14.0	22.0	19.5	24.5	10.5	2.5
Merged-chr8-25970278-3	chr8	25969846	25970846	+	721.799988	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029884, intron 4 of 17)	RSINE1|SINE|B4	6398.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	108.5	223.5	159.0	46.0	94.5	67.5
Merged-chr16-57556403-4	chr16	57555885	57556885	+	721.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	7143.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	66.0	107.5	89.5	69.5	85.0	93.0
Merged-chr9-7775225-4	chr9	7774733	7775733	+	721.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133739, intron 2 of 4)	intron (NM_133739, intron 2 of 4)	-9157.0	NR_049191	100885830.0		NR_049191	ENSMUSG00000093615	Mir5618	Gm23685|mmu-mir-5618	microRNA 5618	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140750501-2	chr5	140750001	140751001	+	721.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 7 of 7)	intron (NM_173405, intron 7 of 7)	26374.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-24129802-2	chr15	24129302	24130302	+	721.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1093339.0	NM_001081299	320865.0	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l|Tg(GFAP-APOE_i4)1Hol	cadherin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-24525280-4	chr8	24524792	24525792	+	721.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40306.0	NR_035483									0.5	11.0	6.0	0.0	6.0	2.5
Merged-chr9-51052418-2	chr9	51051918	51052918	+	721.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24676.0	NM_001033534	244864.0	Mm.335152	NM_001033534	ENSMUSG00000060594	Layn	E030012M19Rik|Gm511	layilin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64100421-3	chr13	64099927	64100927	+	721.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001321, intron 9 of 11)	intron (NM_001001321, intron 9 of 11)	-11226.0	NM_008291	15487.0	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	0.0	0.0	4.5	0.5	3.0	0.0
Merged-chr2-145957568-1	chr2	145957068	145958068	+	721.666687	f1_c57bl6.idr	intron (NM_175280, intron 6 of 6)	intron (NM_175280, intron 6 of 6)	22784.0	NM_175280	78774.0	Mm.136347	NM_175280	ENSMUSG00000037143	Cfap61	4930529M08Rik|BB178539|BC024760	cilia and flagella associated protein 61	protein-coding	0.0	3.5	4.0	7.5	1.0	5.5
Merged-chr5-147071237-1	chr5	147070737	147071737	+	721.666687	f0_balb.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	5335.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	0.0	1.0	0.0	3.5	27.0	22.5
Merged-chr1-191131491-3	chr1	191131007	191132007	+	721.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33093.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37721612-3	chr13	37721103	37722103	+	721.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104435.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-97536831-3	chr16	97536332	97537332	+	721.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013606, intron 1 of 13)	RMER17C|LTR|ERVK	749.0	NM_013606	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	5.0	0.5	2.5	13.0	8.5	9.5
Merged-chr8-75103658-5	chr8	75103150	75104150	+	721.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A2|LTR|ERVK	-5859.0	NM_001302540	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	7.0	8.5	2.5	10.0	3.0	5.0
Merged-chr4-133166970-2	chr4	133166429	133167429	+	721.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	ID_B1|SINE|B4	-28726.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	85.0	210.5	159.0	86.5	186.5	171.0
Merged-chr5-112877256-2	chr5	112876756	112877756	+	721.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028901, intron 3 of 43)	intron (NM_028901, intron 3 of 43)	19106.0	NM_028901	74376.0	Mm.441903	NM_028901	ENSMUSG00000072720	Myo18b	4932408L24Rik|4933411E19Rik|Gm448	myosin XVIIIb	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94473514-2	chr11	94473014	94474014	+	721.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001112813, exon 1 of 35)	exon (NM_001112813, exon 1 of 35)	684.0	NM_001177888	12291.0	Mm.29585	NM_009783	ENSMUSG00000020866	Cacna1g	Cav3.1d|[a]1G|a1G|alpha-1G|mKIAA1123	calcium channel, voltage-dependent, T type, alpha 1G subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173772528-2	chr2	173772028	173773028	+	721.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019806, intron 3 of 5)	intron (NM_019806, intron 3 of 5)	34957.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120830479-4	chr14	120829955	120830955	+	721.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80739.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-13839982-3	chr6	13839482	13840482	+	721.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330666)	promoter-TSS (NM_001330666)	-40.0	NM_145066	64450.0	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94599547-4	chr16	94599061	94600061	+	721.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-11858.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127626653-4	chr10	127626215	127627215	+	721.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-5567.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-3386895-2	chr18	3386395	3387395	+	721.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029402, intron 1 of 20)	B1_Mus1|SINE|Alu	3670.0	NM_029402	71745.0	Mm.291707	NM_029402	ENSMUSG00000024231	Cul2	1300003D18Rik|4932411N15Rik|AI327301|mKIAA4106	cullin 2	protein-coding	3.0	2.0	2.5	0.5	2.0	2.5
Merged-chr8-46850711-3	chr8	46850217	46851217	+	721.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110972.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41018572-3	chr13	41018082	41019082	+	721.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360770, intron 3 of 4)	intron (NM_001360770, intron 3 of 4)	2332.0	NM_001360770	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-82029419-3	chr3	82028910	82029910	+	721.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32488.0	NM_021370	58170.0	Mm.88839	NM_021370	ENSMUSG00000028008	Asic5	Accn5|Blinac|Inac	acid-sensing (proton-gated) ion channel family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139086214-3	chr4	139085717	139086717	+	721.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008675, intron 1 of 3)	intron (NM_008675, intron 1 of 3)	6753.0	NM_008675	17965.0	Mm.9404	NM_008675	ENSMUSG00000041120	Nbl1	D4H1S1733E|DAN|Dana|NO3	neuroblastoma, suppression of tumorigenicity 1	protein-coding	1.5	0.0	0.0	0.0	0.5	0.5
Merged-chr2-144248183-2	chr2	144247683	144248683	+	721.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	18019.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-52306380-2	chr12	52305880	52306880	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029760, intron 10 of 10)	intron (NM_029760, intron 10 of 10)	174229.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88110062-2	chr17	88109562	88110562	+	721.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-15450.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3642217-2	chr4	3641782	3642782	+	721.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-14224.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	0.0	0.0	6.5	0.0	1.0	2.0
Merged-chr13-109821872-1	chr13	109821372	109822372	+	721.5	f0_balb.idr	intron (NM_011056, intron 7 of 16)	intron (NM_011056, intron 7 of 16)	-81937.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3471572-3	chr2	3471078	3472078	+	721.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027509, intron 1 of 4)	PB1D11|SINE|Alu	3408.0	NM_022724	64707.0	Mm.23483	NM_022724	ENSMUSG00000026646	Suv39h2	4930507K23Rik|AA536750|D030054H19Rik|D2Ertd544e|KMT1B	suppressor of variegation 3-9 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173425773-2	chr1	173425273	173426273	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 1 of 8)	intron (NM_001013779, intron 1 of 8)	5169.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	22.5	37.5	12.5	7.0	38.0	25.0
Merged-chr3-98100717-2	chr3	98100217	98101217	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 8 of 33)	intron (NM_010928, intron 8 of 33)	-59917.0	NM_027665	71078.0	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141473490-2	chr7	141472990	141473990	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025593, intron 1 of 1)	intron (NM_025593, intron 1 of 1)	1663.0	NM_025593	66491.0	Mm.380115	NM_025593	ENSMUSG00000038489	Polr2l	2510029B14Rik	polymerase (RNA) II (DNA directed) polypeptide L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34766729-2	chr13	34766229	34767229	+	721.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4b|LINE|L1	27087.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61340304-2	chr10	61339804	61340804	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013753, intron 17 of 19)	ID_B1|SINE|B4	42468.0	NM_011073	18646.0	Mm.240313	NM_011073	ENSMUSG00000037202	Prf1	Pfn|Pfp|Prf-1	perforin 1 (pore forming protein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19631224-2	chr7	19630724	19631724	+	721.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019649)	TTS (NM_019649)	-1786.0	NM_009046	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103055913-2	chr14	103055413	103056413	+	721.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008392, exon 5 of 5)	3' UTR (NM_008392, exon 5 of 5)	8901.0	NM_008392	16365.0	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-7984123-2	chr6	7983623	7984623	+	721.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	138899.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120959093-2	chr11	120958550	120959550	+	721.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_030696)	TTS (NM_030696)	9983.0	NM_001038654	80879.0	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	2.0	13.5	0.0	0.0	1.0	0.5
Merged-chr13-54575768-2	chr13	54575268	54576268	+	721.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_019968, exon 2 of 4)	exon (NM_019968, exon 2 of 4)	755.0	NM_019968	56795.0	Mm.89484	NM_019968	ENSMUSG00000025870	Arl10	Arl10a|Arm1	ADP-ribosylation factor-like 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-127154647-2	chr6	127154147	127155147	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040275, intron 1 of 1)	intron (NR_040275, intron 1 of 1)	-3599.0	NM_009829	12444.0	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80576158-2	chr10	80575658	80576658	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_078477, intron 1 of 1)	intron (NM_078477, intron 1 of 1)	1138.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104998668-2	chr3	104998168	104999168	+	721.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-36959.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-44990972-2	chr2	44990472	44991472	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 9 of 9)	intron (NM_001355291, intron 9 of 9)	32205.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35122025-2	chr9	35121525	35122525	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_029475, intron 2 of 5)	intron (NR_029475, intron 2 of 5)	-5161.0	NM_009178	20443.0	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	SIAT4-C|ST3Gal IV|ST3GalIV|Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119378570-2	chr13	119378070	119379070	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008710, intron 7 of 16)	intron (NM_008710, intron 7 of 16)	30441.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11552779-2	chr8	11552279	11553279	+	721.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2008.0	NM_001359137	71941.0	Mm.196576	NM_024248	ENSMUSG00000056228	Cars2	2310051N18Rik|2410044A07Rik|D530030H10Rik|cysRS	cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-125323063-2	chr10	125322563	125323563	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 1 of 5)	Lx9|LINE|L1	5900.0	NM_011391	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28133481-2	chr17	28132981	28133981	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 3 of 3)	intron (NR_039557, intron 3 of 3)	-9045.0	NM_001004366	268935.0	Mm.258491	NM_001004366	ENSMUSG00000038677	Scube3	CEGF3|D030038I21Rik	signal peptide, CUB domain, EGF-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19007122-2	chr7	19006622	19007622	+	721.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178757)	TTS (NM_178757)	3057.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	0.0	0.5	2.5	3.0	3.5	10.0
Merged-chr1-157407724-1	chr1	157407224	157408224	+	721.5	f0_balb.idr	intron (NM_177644, intron 1 of 17)	intron (NM_177644, intron 1 of 17)	-4628.0	NR_027984	69953.0	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	20.5	56.5	19.5	26.5	57.0	60.5
Merged-chr6-134771332-2	chr6	134770825	134771825	+	721.5	f0_c57.idr|f1_c57bl6.idr	intron (NM_130447, intron 1 of 6)	L1Md_F2|LINE|L1	-21035.0	NR_151454	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	2.0	4.5	8.0	3.5	11.0	15.0
Merged-chr12-69582344-2	chr12	69581840	69582840	+	721.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033236, exon 3 of 6)	exon (NM_001033236, exon 3 of 6)	688.0	NM_001033236	207965.0	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	12.0	17.5	22.0	24.0	40.5	45.5
Merged-chr11-79033768-2	chr11	79033268	79034268	+	721.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045873, exon 6 of 6)	non-coding (NR_045873, exon 6 of 6)	10171.0	NR_045873	790910.0	Mm.440410	NR_045873		Gm11201	-	predicted gene 11201	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120403751-2	chr14	120403251	120404251	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360378, intron 7 of 8)	intron (NM_001360378, intron 7 of 8)	-74710.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59349919-1	chr4	59349419	59350419	+	721.5	f0_balb.idr	exon (NM_001163288, exon 12 of 17)	exon (NM_001163288, exon 12 of 17)	88714.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145837872-2	chr2	145837372	145838372	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	51756.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31036999-2	chr2	31036499	31037499	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 12 of 15)	intron (NM_001355105, intron 12 of 15)	54720.0	NM_028846	74270.0	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-23601709-3	chr9	23601202	23602202	+	721.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	378626.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88432088-2	chr17	88431588	88432588	+	721.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8616.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	0.0	0.0	2.0	0.0	2.0	0.0
Merged-chr15-66854281-2	chr15	66853781	66854781	+	721.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22452.0	NM_009192	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6856490-2	chr19	6855990	6856990	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081291, intron 6 of 26)	intron (NM_001081291, intron 6 of 26)	1721.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29510493-2	chr6	29509993	29510993	+	721.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-2541.0	NM_001029985	333088.0	Mm.332961	NM_001029985	ENSMUSG00000059022	Kcp	AW060220|CRIM-2|Crim2|Gm793|KCP-1	kielin/chordin-like protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133495994-1	chr4	133495494	133496494	+	721.5	f1_balb.idr	intron (NM_001081156, intron 1 of 1)	intron (NM_001081156, intron 1 of 1)	2556.0	NM_001081156	69539.0	Mm.151594	NM_001081156	ENSMUSG00000056596	Trnp1	2300002D11Rik|Trnp	TMF1-regulated nuclear protein 1	protein-coding	0.0	5.5	0.0	0.5	0.0	0.0
Merged-chr6-70790025-2	chr6	70789525	70790525	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009075, intron 1 of 8)	intron (NM_009075, intron 1 of 8)	2150.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101786134-3	chr5	101785626	101786626	+	721.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173370, intron 2 of 12)	intron (NM_173370, intron 2 of 12)	20996.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20660911-2	chr9	20660411	20661411	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023371, intron 2 of 3)	intron (NM_023371, intron 2 of 3)	8781.0	NM_023371	23988.0	Mm.7906	NM_023371	ENSMUSG00000032171	Pin1	0610025L01Rik|D9Bwg1161e	protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61267150-2	chr18	61266667	61267667	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146086, intron 17 of 21)	intron (NM_146086, intron 17 of 21)	46668.0	NM_146086	225600.0	Mm.391106	NM_146086	ENSMUSG00000024575	Pde6a	Pdea|nmf282	phosphodiesterase 6A, cGMP-specific, rod, alpha	protein-coding	13.5	5.5	3.0	4.0	9.0	8.0
Merged-chr13-17838017-2	chr13	17837517	17838517	+	721.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-32920.0	NM_027118	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117197538-2	chr11	117197038	117198038	+	721.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2123.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3909853-2	chr19	3909353	3910353	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271443, intron 5 of 6)	PB1D9|SINE|Alu	-2720.0	NM_001136091	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17408816-2	chr6	17408316	17409316	+	721.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-55141.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	18.5	18.5	10.5	3.0	13.5	4.0
Merged-chr5-23115615-1	chr5	23115115	23116115	+	721.5	f0_balb.idr	intron (NM_029990, intron 2 of 2)	RLTR11A|LTR|ERVK	318738.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	11.0	7.0	11.5	13.5	7.0	2.5
Merged-chr15-3987316-2	chr15	3986816	3987816	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145930, intron 5 of 5)	ORR1C2|LTR|ERVL-MaLR	-7743.0	NM_134099	106052.0	Mm.234191	NM_134099	ENSMUSG00000022184	Fbxo4	1700096C12Rik|AI851261|AW494535|Fbx4	F-box protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-42925652-2	chr6	42925152	42926152	+	721.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL2|LINE|L1	-1581.0	NM_146295	258292.0	Mm.222992	NM_146295	ENSMUSG00000073111	Olfr446	MOR261-12	olfactory receptor 446	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-78864405-3	chr12	78863929	78864929	+	721.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026114, intron 1 of 7)	intron (NM_026114, intron 1 of 7)	2357.0	NM_026114	13665.0	Mm.196220	NM_026114	ENSMUSG00000021116	Eif2s1	0910001O23Rik|2410026C18Rik|35kDa|Eif2a|eIF2alpha	eukaryotic translation initiation factor 2, subunit 1 alpha	protein-coding	19.5	9.0	6.0	10.0	9.0	4.5
Merged-chr4-63214370-4	chr4	63213823	63214823	+	721.424988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1089.0	NM_025685	373864.0	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr8-71471231-2	chr8	71470752	71471752	+	721.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001294259, intron 1 of 3)	intron (NM_001294259, intron 1 of 3)	2058.0	NR_122114	66498.0	Mm.260360	NM_025600	ENSMUSG00000074247	Dda1	1500034J01Rik|1700095J19Rik|R74921	DET1 and DDB1 associated 1	protein-coding	1.5	0.5	2.0	0.0	2.5	0.0
Merged-chr14-54731591-4	chr14	54731093	54732093	+	721.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 7 of 10)	intron (NM_016972, intron 7 of 10)	-19419.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	1.5	1.0	6.5	0.0	8.5	1.5
Merged-chr16-55967368-2	chr16	55966868	55967868	+	721.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_024218, intron 3 of 5)	intron (NM_024218, intron 3 of 5)	1093.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55234395-2	chr19	55233895	55234895	+	721.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 3 of 20)	intron (NM_001081076, intron 3 of 20)	6841.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95513772-2	chr11	95513183	95514183	+	721.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_130858, intron 1 of 1)	CpG	882.0	NM_130858	104079.0	Mm.22970	NM_130858	ENSMUSG00000046719	Nxph3	-	neurexophilin 3	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr1-173962858-2	chr1	173962383	173963383	+	721.333374	f0_balb.idr|f1_balb.idr	intron (NM_008327, intron 6 of 6)	intron (NM_008327, intron 6 of 6)	19961.0	NM_008327	26388.0	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	0.5	6.0	11.0	0.0	0.0	0.0
Merged-chr15-28155019-2	chr15	28154519	28155519	+	721.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48747.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69238672-3	chr3	69238182	69239182	+	721.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16263.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	0.0	2.5	2.0	2.0	2.0	0.5
Merged-chr15-101270120-2	chr15	101269620	101270620	+	721.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_010444, exon 2 of 7)	exon (NM_010444, exon 2 of 7)	3274.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73593087-3	chr15	73592576	73593576	+	721.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357747, intron 2 of 7)	intron (NM_001357747, intron 2 of 7)	3450.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-48465142-3	chr14	48464646	48465646	+	721.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310584, intron 4 of 16)	intron (NM_001310584, intron 4 of 16)	18794.0	NR_132324	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	14.5	9.5	3.5	14.0	9.5	11.0
Merged-chr7-16001555-2	chr7	16001055	16002055	+	721.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TATG)n|Simple_repeat|Simple_repeat	-2060.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123924945-3	chr8	123924483	123925483	+	721.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172288, intron 12 of 25)	intron (NM_172288, intron 12 of 25)	24282.0	NM_172288	234865.0	Mm.267812	NM_172288	ENSMUSG00000039509	Nup133	mermaid	nucleoporin 133	protein-coding	1.0	3.0	4.0	3.0	0.0	2.5
Merged-chr16-32978661-3	chr16	32978164	32979164	+	721.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081255, intron 8 of 20)	intron (NM_001081255, intron 8 of 20)	64564.0	NM_001310672	70144.0	Mm.491178	NM_001081255	ENSMUSG00000022801	Lrch3	2210409B11Rik|AW215594|Gm1742	leucine-rich repeats and calponin homology (CH) domain containing 3	protein-coding	9.5	28.0	9.5	10.5	25.0	23.5
Merged-chr11-99150113-3	chr11	99149616	99150616	+	721.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007719, intron 1 of 2)	intron (NM_007719, intron 1 of 2)	4961.0	NM_001301713	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-94470936-3	chr2	94470460	94471460	+	721.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32774.0	NM_001349003	11800.0	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32160458-3	chr4	32159985	32160985	+	721.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	196378.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	55.0	91.5	75.5	64.5	67.0	51.5
Merged-chr7-115132555-3	chr7	115132068	115133068	+	721.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	181294.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	0.0	4.0	1.0	0.0	1.0	0.5
Merged-chr9-35045145-2	chr9	35044645	35045645	+	721.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71583.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35649241-4	chr7	35648685	35649685	+	721.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-1703.0	NM_019746	56330.0	Mm.371609	NM_019746	ENSMUSG00000030417	Pdcd5	2200003D22Rik|AA408513|Tfar19	programmed cell death 5	protein-coding	0.0	0.0	5.5	0.0	8.0	5.0
Merged-chr17-15498955-2	chr17	15498455	15499455	+	721.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013684)	promoter-TSS (NM_013684)	-679.0	NM_011185	19170.0	Mm.32912	NM_011185	ENSMUSG00000014769	Psmb1	AA409053|C81484|Lmpc5	proteasome (prosome, macropain) subunit, beta type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141061029-6	chr7	141060558	141061558	+	721.222229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177897)	promoter-TSS (NM_177897)	-216.0	NM_177897	330671.0	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82140106-3	chr11	82139591	82140591	+	721.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24906.0	NM_021443	20307.0	Mm.42029	NM_021443	ENSMUSG00000009185	Ccl8	1810063B20Rik|AB023418|HC14|MCP-2|Mcp2|Scya8	chemokine (C-C motif) ligand 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-4595205-4	chr5	4594699	4595699	+	721.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	163017.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-89052032-3	chr4	89051552	89052552	+	721.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033533, intron 1 of 2)	intron (NR_033533, intron 1 of 2)	1745.0	NR_033533	100040617.0	Mm.171720	NR_033533	ENSMUSG00000085183	Wincr1	Gm12603	WNT induced non-coding RNA 1	ncRNA	0.5	0.0	2.5	0.0	0.0	0.5
Merged-chr10-91142907-3	chr10	91142424	91143424	+	721.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18961.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44793875-3	chr16	44793370	44794370	+	721.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021325, intron 6 of 6)	intron (NM_021325, intron 6 of 6)	-26858.0	NM_207244	239849.0	Mm.445045	NM_207244	ENSMUSG00000062082	Cd200r4	F630107N04Rik|MCD200RLa	CD200 receptor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66137814-3	chr7	66137292	66138292	+	721.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081163, intron 2 of 2)	intron (NM_001081163, intron 2 of 2)	28277.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103084700-2	chr2	103084200	103085200	+	721.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355474, intron 2 of 5)	intron (NM_001355474, intron 2 of 5)	11025.0	NM_019735	56369.0	Mm.24772	NM_019735	ENSMUSG00000010911	Apip	APIP2|CGI-29|Mmrp19	APAF1 interacting protein	protein-coding	0.0	1.0	0.0	2.0	12.5	1.5
Merged-chr7-142572016-2	chr7	142571516	142572516	+	721.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5131.0	NR_030416	735280.0		NR_030416	ENSMUSG00000076275	Mir675	Mirn675|mir-675|mmu-mir-675	microRNA 675	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17720868-2	chr16	17720368	17721368	+	721.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285886, intron 1 of 16)	intron (NM_001285886, intron 1 of 16)	2032.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120541235-2	chr8	120540735	120541735	+	721.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 1 of 15)	B2_Mm2|SINE|B2	2539.0	NR_106159	102466849.0		NR_106159	ENSMUSG00000098280	Mir7687	Gm27573|mmu-mir-7687	microRNA 7687	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-120150815-2	chr13	120150315	120151315	+	721.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039648, intron 1 of 2)	intron (NM_001039648, intron 1 of 2)	10569.0	NM_001039648	639910.0	Mm.424428	NM_001039648	ENSMUSG00000096323	Gm20767	-	predicted gene, 20767	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97931164-2	chr3	97930664	97931664	+	721.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033779, intron 1 of 1)	intron (NM_001033779, intron 1 of 1)	991.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50838701-2	chr15	50838201	50839201	+	721.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 2 of 5)	intron (NM_001310481, intron 2 of 5)	50348.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0.0	0.0	0.0	0.0	3.0	0.0
Merged-chr15-99771977-3	chr15	99771475	99772475	+	721.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028015, intron 1 of 9)	CpG	540.0	NM_028015	71949.0	Mm.390821	NM_028015	ENSMUSG00000023021	Cers5	2310081H14Rik|AU045339|AW544927|Lass5|Trh4	ceramide synthase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-99094743-3	chr6	99094242	99095242	+	721.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053202, intron 4 of 18)	intron (NM_053202, intron 4 of 18)	-66444.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-22087940-3	chr3	22087443	22088443	+	721.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	11291.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128973948-4	chr4	128973496	128974496	+	721.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-11541.0	NM_001301841	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127744390-3	chr7	127743845	127744845	+	721.023804	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2430.0	NM_172748	233902.0	Mm.259353	NM_172748	ENSMUSG00000030811	Fbxl19	6030430O11|BC059812|Fbl19	F-box and leucine-rich repeat protein 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-5471803-1	chr12	5471303	5472303	+	721.0	f1_c57bl6.idr	Intergenic	Intergenic	95301.0	NR_015579	72669.0	Mm.10434	NM_028318		2810032G03Rik	AI461720	RIKEN cDNA 2810032G03 gene	ncRNA	4.0	0.0	7.5	1.5	1.5	7.0
Merged-chr7-80833925-1	chr7	80833425	80834425	+	721.0	f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-28183.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	44.0	28.5	38.0	53.0	73.0	46.0
Merged-chr11-59642096-2	chr11	59641596	59642596	+	721.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-20399.0	NM_201245	26936.0	Mm.2402	NM_012027	ENSMUSG00000005417	Mprip	9530046C02|AA536749|AI647711|C76423|Gm34094|RIP3|Rhoip3|mKIAA0864|p116Rip	myosin phosphatase Rho interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67820121-2	chr5	67819621	67820621	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	27310.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126522996-2	chr8	126522496	126523496	+	721.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47931.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95961228-2	chr15	95960728	95961728	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 16 of 19)	intron (NM_175344, intron 16 of 19)	118325.0	NR_126493	402773.0	Mm.210567	NM_001033483	ENSMUSG00000078925	D030018L15Rik	-	nuclear receptor coactivator 2 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171387916-2	chr1	171387409	171388409	+	721.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027893, exon 9 of 9)	3' UTR (NM_027893, exon 9 of 9)	-1051.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	15.5	28.5	41.0	10.5	30.5	28.0
Merged-chr15-50868485-2	chr15	50867985	50868985	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_032000, intron 1 of 5)	intron (NM_032000, intron 1 of 5)	20564.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	15.5	32.0	11.0	3.5	9.5	5.5
Merged-chr11-69399053-2	chr11	69398553	69399553	+	721.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025915)	promoter-TSS (NM_025915)	-819.0	NM_025915	67020.0	Mm.390406	NM_025915	ENSMUSG00000045377	Tmem88	2600017H02Rik	transmembrane protein 88	protein-coding	0.0	0.5	4.0	0.0	0.5	4.5
Merged-chr15-41609039-2	chr15	41608539	41609539	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 2 of 17)	intron (NR_152565, intron 2 of 17)	159936.0	NM_001358977	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49500922-1	chr16	49500422	49501422	+	721.0	f0_balb.idr	Intergenic	Intergenic	-198372.0	NM_028680	73916.0	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35029242-2	chr9	35028742	35029742	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190912, intron 13 of 15)	intron (NM_001190912, intron 13 of 15)	-87486.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0.0	3.5	0.0	0.0	0.0	0.0
Merged-chr13-52099268-2	chr13	52098768	52099768	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045061, intron 2 of 7)	intron (NR_045061, intron 2 of 7)	2527.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70706103-2	chr8	70705613	70706613	+	721.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	8374.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	0.0	5.0	2.5	1.5	2.5	0.0
Merged-chr16-91356242-2	chr16	91355769	91356769	+	721.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-16514.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75646234-1	chr11	75645734	75646734	+	721.0	f1_balb.idr	intron (NM_008916, intron 8 of 11)	B2_Mm2|SINE|B2	-5275.0	NM_008659	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	0.0	3.0	1.5	0.0	2.5	0.0
Merged-chr13-63703138-2	chr13	63702638	63703638	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_126476, intron 4 of 4)	intron (NR_126476, intron 4 of 4)	31160.0	NR_126476	75522.0	Mm.54259	NR_126476	ENSMUSG00000113825	1700024I08Rik	-	RIKEN cDNA 1700024I08 gene	ncRNA	6.0	9.5	2.0	6.0	6.5	1.5
Merged-chr4-129336819-2	chr4	129336319	129337319	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025970, intron 1 of 6)	B2_Mm1a|SINE|B2	793.0	NM_025970	67106.0	Mm.36575	NM_025970	ENSMUSG00000057572	Zbtb8os	2010001H09Rik|2310028N13Rik|AI851226|Arch|Archm	zinc finger and BTB domain containing 8 opposite strand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81784843-1	chr7	81784343	81785343	+	721.0	f1_c57bl6.idr	intron (NM_026077, intron 3 of 4)	ERVB7_4-LTR_MM|LTR|ERVK	4610.0	NM_026077	67290.0	Mm.248391	NM_026077	ENSMUSG00000025102	3110040N11Rik	AI851475	RIKEN cDNA 3110040N11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-57586828-2	chr8	57586328	57587328	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 1 of 11)	intron (NM_001167981, intron 1 of 11)	-64925.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-52386162-3	chr5	52385639	52386639	+	721.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256059, intron 10 of 11)	intron (NM_001256059, intron 10 of 11)	22335.0	NM_011435	20657.0	Mm.2407	NM_011435	ENSMUSG00000072941	Sod3	AI314465|EC-SOD	superoxide dismutase 3, extracellular	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51052468-1	chr14	51051968	51052968	+	721.0	f0_balb.idr	Intergenic	Intergenic	-2305.0	NM_001011877	497113.0	Mm.379741	NM_001011877	ENSMUSG00000059648	Rnase11	Raj1	ribonuclease, RNase A family, 11 (non-active)	protein-coding	4.0	22.0	20.0	6.5	27.0	26.5
Merged-chr17-24470849-1	chr17	24470349	24471349	+	721.0	f0_c57.idr	exon (NM_025954, exon 1 of 2)	exon (NM_025954, exon 1 of 2)	376.0	NM_025954	67078.0	Mm.28541	NM_025954	ENSMUSG00000043445	Pgp	1700012G19Rik|AI481330|AUM|G3PP	phosphoglycolate phosphatase	protein-coding	13.5	37.5	29.0	8.5	25.0	50.0
Merged-chr2-110907944-2	chr2	110907444	110908444	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355246, intron 1 of 3)	RMER1C|Other|Other	42300.0	NM_001355246	228432.0	Mm.483325	NM_001081556	ENSMUSG00000074968	Ano3	AI838058|B230324K02Rik|Tmem16c	anoctamin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3866110-2	chr12	3865576	3866576	+	721.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001271753, exon 4 of 23)	exon (NM_001271753, exon 4 of 23)	-3832.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-93969085-1	chr11	93968585	93969585	+	721.0	f1_balb.idr	promoter-TSS (NM_008704)	promoter-TSS (NM_008704)	-564.0	NM_008704	18102.0	Mm.439702	NM_008704	ENSMUSG00000037601	Nme1	AL024257|NDPK-A|NM23-M1|NM23A	NME/NM23 nucleoside diphosphate kinase 1	protein-coding	74.5	86.5	90.0	55.0	98.5	106.0
Merged-chr16-50689242-2	chr16	50688742	50689742	+	721.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37890.0	NR_105782	102466634.0		NR_105782	ENSMUSG00000098482	Mir6363	Gm28026|mmu-mir-6363	microRNA 6363	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61103454-2	chr18	61102954	61103954	+	721.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-2118.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132072955-2	chr4	132072455	132073455	+	721.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183428)	promoter-TSS (NM_183428)	-858.0	NM_183428	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54818212-2	chr6	54817712	54818712	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199143, intron 1 of 4)	intron (NM_199143, intron 1 of 4)	1296.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137873522-2	chr4	137873006	137874006	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	11269.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	4.5	3.0	0.0	0.5	3.0	3.0
Merged-chr2-119297228-1	chr2	119296728	119297728	+	721.0	f1_c57bl6.idr	exon (NM_172269, exon 5 of 5)	exon (NM_172269, exon 5 of 5)	8486.0	NM_172269	228545.0	Mm.294761	NM_172269	ENSMUSG00000034216	Vps18	9930024E13Rik	VPS18 CORVET/HOPS core subunit	protein-coding	0.0	9.0	1.0	0.0	3.5	0.5
Merged-chr15-85882542-2	chr15	85882042	85883042	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028063, intron 1 of 10)	intron (NM_028063, intron 1 of 10)	3215.0	NM_028063	72026.0	Mm.158211	NM_028063	ENSMUSG00000022386	Trmu	1110005N20Rik|1600025P05Rik|AI314320|Trmt1	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-14852426-2	chr19	14851926	14852926	+	721.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	-254243.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84439714-2	chr10	84439214	84440214	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 1 of 6)	intron (NM_001004363, intron 1 of 6)	757.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91092717-2	chr2	91092217	91093217	+	721.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-3961.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	6.0	12.5	18.5	3.0	6.0	16.0
Merged-chr4-123918547-2	chr4	123918089	123919089	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_017475, intron 1 of 6)	intron (NM_017475, intron 1 of 6)	1156.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	7.5	58.5	40.5	46.5	61.5	45.5
Merged-chr7-30650877-1	chr7	30650377	30651377	+	721.0	f1_balb.idr	promoter-TSS (NM_133693)	promoter-TSS (NM_133693)	-649.0	NM_133693	68035.0	Mm.401747	NM_133693	ENSMUSG00000036733	Rbm42	1700003D06Rik|3100004P22Rik	RNA binding motif protein 42	protein-coding	32.5	129.0	104.5	32.0	124.5	114.0
Merged-chr12-54984547-2	chr12	54984047	54985047	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013815, intron 2 of 26)	intron (NM_013815, intron 2 of 26)	1789.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6477189-3	chr19	6476696	6477696	+	721.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 9 of 22)	intron (NM_001205234, intron 9 of 22)	58458.0	NM_001205234	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128550711-2	chr10	128550211	128551211	+	721.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1543.0	NM_018860	67945.0	Mm.290786	NM_018860	ENSMUSG00000093674	Rpl41	1810055P16Rik|2210411K19Rik	ribosomal protein L41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105630314-1	chr4	105629814	105630814	+	721.0	f1_balb.idr	Intergenic	Intergenic	472967.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.0	0.0	0.5	14.0	13.0	5.5
Merged-chr17-23720104-1	chr17	23719604	23720604	+	721.0	f1_balb.idr	Intergenic	Intergenic	-6232.0	NM_023058	268930.0	Mm.182193	NM_023058	ENSMUSG00000023908	Pkmyt1	6230424P17|AW209059|Myt1	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	0.0	0.0	1.0	10.0	11.0	3.5
Merged-chr10-34148681-2	chr10	34148181	34149181	+	721.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-20709.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25029457-2	chr2	25028957	25029957	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146251, intron 20 of 34)	intron (NM_146251, intron 20 of 34)	-24922.0	NM_001177654	56876.0	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34194228-2	chr10	34193728	34194728	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	B1F2|SINE|Alu	13323.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35725378-2	chr8	35724888	35725888	+	721.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	101171.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	9.0	8.0	6.0	1.5	7.0	1.5
Merged-chr4-140995266-2	chr4	140994766	140995766	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164366, intron 6 of 28)	intron (NM_001164366, intron 6 of 28)	8393.0	NM_001164366	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107955932-1	chr13	107955432	107956432	+	721.0	f0_balb.idr	Intergenic	Intergenic	-65868.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	1.5	4.0	7.0	1.5	4.0	6.5
Merged-chr17-35137478-2	chr17	35136978	35137978	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252469, intron 2 of 23)	B1_Mm|SINE|Alu	1764.0	NM_001252469	224727.0	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	0.5	1.5	0.0	0.5	2.5	0.0
Merged-chr11-76528329-1	chr11	76527829	76528829	+	721.0	f1_balb.idr	intron (NM_198894, intron 1 of 22)	intron (NM_198894, intron 1 of 22)	-18910.0	NM_198018	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	2.5	5.0	6.0	2.5	5.0	3.5
Merged-chr5-71861098-1	chr5	71860598	71861598	+	721.0	f1_balb.idr	intron (NM_008069, intron 3 of 8)	intron (NM_008069, intron 3 of 8)	161082.0	NM_008069	14400.0	Mm.38567	NM_008069	ENSMUSG00000029212	Gabrb1	AW061132|B230208N19Rik|Gabrb-1	gamma-aminobutyric acid (GABA) A receptor, subunit beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88220474-2	chr1	88219974	88220974	+	721.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_201641)	TTS (NM_201641)	-6546.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62213703-4	chr10	62213204	62214204	+	721.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 1 of 7)	ORR1B1|LTR|ERVL-MaLR	17514.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-35973392-2	chr1	35972892	35973892	+	721.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95008.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31387654-2	chr6	31387154	31388154	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040300, intron 2 of 2)	MTE2a|LTR|ERVL-MaLR	11119.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-117429139-3	chr7	117428643	117429643	+	720.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175645, intron 1 of 11)	MER74B|LTR|ERVL	48164.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71534484-2	chr8	71533984	71534984	+	720.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_198095, intron 4 of 4)	intron (NM_198095, intron 4 of 4)	2953.0	NM_198095	69550.0	Mm.260325	NM_198095	ENSMUSG00000046718	Bst2	2310015I10Rik|Bst-2|C87040|CD317|DAMP-1|GREG	bone marrow stromal cell antigen 2	protein-coding	1.0	5.5	1.0	0.0	2.0	2.0
Merged-chr10-44003137-2	chr10	44002637	44003637	+	720.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172393, intron 1 of 19)	intron (NM_172393, intron 1 of 19)	1709.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99833268-3	chr7	99832778	99833778	+	720.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4861.0	NM_016720	50877.0	Mm.103703	NM_016720	ENSMUSG00000035239	Neu3	-	neuraminidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49843944-2	chr16	49843444	49844444	+	720.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-11710.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59761076-3	chr13	59760573	59761573	+	720.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026921, intron 2 of 3)	intron (NM_026921, intron 2 of 3)	8716.0	NM_026921	69046.0	Mm.7884	NM_026921	ENSMUSG00000044792	Isca1	1810010A06Rik|Hbld2	iron-sulfur cluster assembly 1	protein-coding	0.0	1.0	0.5	0.0	0.5	0.5
Merged-chr1-65195678-3	chr1	65195196	65196196	+	720.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011086, exon 5 of 42)	exon (NM_011086, exon 5 of 42)	9011.0	NM_011086	18711.0	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE type zinc finger containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-80475131-4	chr1	80474636	80475636	+	720.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040460, intron 2 of 2)	intron (NR_040460, intron 2 of 2)	29204.0	NR_040460	72208.0	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan	RIKEN cDNA 1700016L21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23611224-4	chr16	23610648	23611648	+	720.758301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023386, intron 1 of 1)	intron (NM_023386, intron 1 of 1)	1229.0	NM_023386	67775.0	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88564042-2	chr5	88563542	88564542	+	720.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289775)	promoter-TSS (NM_001289775)	-998.0	NM_001289774	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88788620-1	chr4	88788120	88789120	+	720.75	f0_c57.idr	promoter-TSS (NM_001161609).4	promoter-TSS (NM_001161609).4	-12.0	NM_001161609	545654.0	Mm.478784	NM_001161609	ENSMUSG00000095101	Gm13285	limitin	predicted gene 13285	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-62152177-2	chr5	62151677	62152677	+	720.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	343334.0	NM_019468	14380.0	Mm.347430	NM_019468	ENSMUSG00000089992	G6pd2	G6pdx-ps1|Gpd-2|Gpd2	glucose-6-phosphate dehydrogenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-121139436-3	chr2	121138954	121139954	+	720.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290812)	promoter-TSS (NM_001290812)	-974.0	NM_001355748	75894.0	Mm.384805	NM_029475	ENSMUSG00000027259	Adal	4930578F03Rik	adenosine deaminase-like	protein-coding	30.0	39.0	40.0	23.0	23.5	29.5
Merged-chr6-125083190-3	chr6	125082685	125083685	+	720.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163269)	TTS (NM_001163269)	11908.0	NM_001163268	381810.0	Mm.333386	NM_001163268	ENSMUSG00000067714	Lpar5	GPR93|Gm1072|Gpr92|LPA5	lysophosphatidic acid receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-57478088-3	chr5	57477600	57478600	+	720.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	239819.0	NR_015588	319216.0	Mm.332387	NR_015588	ENSMUSG00000097216	4932441J04Rik	-	RIKEN cDNA 4932441J04 gene	ncRNA	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr9-62936141-3	chr9	62935732	62936732	+	720.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 2 of 13)	RSINE1|SINE|B4	44647.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-17130628-3	chr19	17130148	17131148	+	720.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181348, intron 9 of 19)	intron (NM_181348, intron 9 of 19)	174530.0	NM_181348	353211.0	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	8.5	23.5	14.0	2.0	14.0	15.5
Merged-chr2-170329360-3	chr2	170328886	170329886	+	720.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-26975.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	18.0	44.5	27.5	14.5	45.5	25.5
Merged-chr1-140465783-3	chr1	140465294	140466294	+	720.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081027, intron 13 of 27)	MLT1F|LTR|ERVL-MaLR	190608.0	NR_040604	75910.0	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100408263-3	chr11	100407745	100408745	+	720.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_176830)	TTS (NM_176830)	6574.0	NM_176830	66180.0	Mm.4940	NM_176830	ENSMUSG00000006931	P3h4	1110036O03Rik|AI413214|Leprel4|Sc65	prolyl 3-hydroxylase family member 4 (non-enzymatic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-46957983-1	chr7	46957483	46958483	+	720.666687	f0_balb.idr	intron (NM_001040695, intron 1 of 11)	intron (NM_001040695, intron 1 of 11)	535.0	NM_001040695	54122.0	Mm.1999	NM_016855	ENSMUSG00000043262	Uevld	8430408E05Rik|Attp	UEV and lactate/malate dehyrogenase domains	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97579006-2	chr7	97578506	97579506	+	720.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081267)	promoter-TSS (NM_001081267)	491.0	NM_001177945	66273.0	Mm.41583	NM_183251	ENSMUSG00000035642	Aamdc	1810020D17Rik|1810037D19Rik|LI2	adipogenesis associated Mth938 domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-62686109-2	chr2	62685609	62686609	+	720.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145523, intron 4 of 7)	intron (NM_145523, intron 4 of 7)	21782.0	NM_145523	227960.0	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-12757463-4	chr8	12757006	12758006	+	720.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015804, intron 1 of 28)	CpG	490.0	NM_001293667	50770.0	Mm.257837	NM_015804	ENSMUSG00000031441	Atp11a	4930558F19Rik|AU040868|Atpc1h|Ih	ATPase, class VI, type 11A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66014146-4	chr5	66013642	66014642	+	720.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9857.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	2.5	0.0	2.0	2.5	0.0	2.0
Merged-chr10-128945848-2	chr10	128945348	128946348	+	720.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_008398, intron 13 of 24)	intron (NM_008398, intron 13 of 24)	12035.0	NM_001330160	16404.0	Mm.179747	NM_008398	ENSMUSG00000025348	Itga7	[a]7|alpha7	integrin alpha 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24040321-2	chr10	24039821	24040821	+	720.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2707.0	NM_001010835	276742.0	Mm.377870	NM_001010835	ENSMUSG00000100689	Taar7e	Gm697|taR-7e	trace amine-associated receptor 7E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75561183-2	chr11	75560687	75561687	+	720.583313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 6 of 13)	intron (NM_001199284, intron 6 of 13)	9758.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	11.0	1.0	5.5	4.5	2.5	4.5
Merged-chr5-43849420-3	chr5	43848932	43849932	+	720.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-19377.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.0	4.0	0.5	12.5	26.5	8.5
Merged-chr4-43966232-4	chr4	43965694	43966694	+	720.541687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027450, intron 1 of 4)	intron (NM_027450, intron 1 of 4)	8492.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5090060-2	chr19	5089560	5090560	+	720.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026553, exon 4 of 8)	exon (NM_026553, exon 4 of 8)	1522.0	NM_026553	68090.0	Mm.44202	NM_026553	ENSMUSG00000024875	Yif1a	5330422J23Rik|54TM|Yif1|Yif1p	Yip1 interacting factor homolog A (S. cerevisiae)	protein-coding	1.5	0.0	0.0	1.0	0.0	0.0
Merged-chr5-90364166-2	chr5	90363666	90364666	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198010, intron 1 of 32)	intron (NM_198010, intron 1 of 32)	2019.0	NM_030886	81702.0	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70498811-2	chr11	70498311	70499311	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6463.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85085435-2	chr8	85084935	85085935	+	720.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010764, exon 4 of 24)	exon (NM_010764, exon 4 of 24)	2166.0	NM_010764	17159.0	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	2.5	9.0	9.0	14.0	14.5	15.5
Merged-chr1-23175696-2	chr1	23175196	23176196	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73443.0	NM_025746	66755.0	Mm.431297	NM_025746	ENSMUSG00000073730	4933415F23Rik	-	RIKEN cDNA 4933415F23 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-75133088-2	chr1	75132588	75133588	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_194333, intron 3 of 11)	intron (NM_194333, intron 3 of 11)	802.0	NM_194333	22626.0	Mm.68157	NM_194333	ENSMUSG00000026205	Slc23a3	SVCT3|Yspl1	solute carrier family 23 (nucleobase transporters), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101286219-2	chr15	101285719	101286719	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026566, intron 1 of 2)	B1_Mur2|SINE|Alu	1918.0	NM_026566	68118.0	Mm.482360	NM_026566	ENSMUSG00000037204	Atg101	9430023L20Rik|AA407441|AU022967	autophagy related 101	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117086498-2	chr11	117085998	117086998	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9150.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77918801-2	chr9	77918286	77919286	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134255, intron 1 of 7)	intron (NM_134255, intron 1 of 7)	1421.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	1.0	3.0	0.0	0.0	2.5	3.0
Merged-chr3-8962827-3	chr3	8962329	8963329	+	720.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	1317.0	NM_001025262	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81396935-2	chr13	81396435	81397435	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 78 of 89)	intron (NM_054053, intron 78 of 89)	236209.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6045379-2	chr19	6044879	6045879	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1197.0	NM_028769	74126.0	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	32.5	29.0	38.0	32.5	37.5	19.5
Merged-chr3-55355560-2	chr3	55355060	55356060	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357475, intron 3 of 16)	intron (NM_001357475, intron 3 of 16)	-106168.0	NM_001195539	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3664996-2	chr7	3664496	3665496	+	720.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_181820)	TTS (NM_181820)	844.0	NM_027203	69757.0	Mm.389782	NM_027203	ENSMUSG00000078813	Leng1	1500001K17Rik	leukocyte receptor cluster (LRC) member 1	protein-coding	7.5	9.5	8.5	0.5	3.5	2.5
Merged-chr5-30917610-2	chr5	30917173	30918173	+	720.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133918, exon 4 of 8)	exon (NM_133918, exon 4 of 8)	-3886.0	NM_001310525	16548.0	Mm.22451	NM_008439	ENSMUSG00000029162	Khk	-	ketohexokinase	protein-coding	0.5	3.0	3.0	1.5	2.5	1.0
Merged-chr9-47746408-2	chr9	47745937	47746937	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	71771.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	6.0	5.5	1.5	4.0	9.0	5.5
Merged-chr2-174299155-2	chr2	174298655	174299655	+	720.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010309, exon 1 of 12)	exon (NM_010309, exon 1 of 12)	1296.0	NM_001310085	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27493936-2	chr7	27493436	27494436	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-5388.0	NM_198048	19153.0	Mm.10119	NM_019412	ENSMUSG00000053198	Prx	L-Periaxin	periaxin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-85592892-4	chr3	85592393	85593393	+	720.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144896, intron 2 of 12)	intron (NM_144896, intron 2 of 12)	18764.0	NM_144896	229487.0	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-79584684-2	chr14	79584184	79585184	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2976.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115344258-2	chr6	115343758	115344758	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16693.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34149346-2	chr8	34148846	34149846	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2607.0	NM_026609	68192.0	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	60.0	98.5	86.0	28.0	83.5	75.5
Merged-chr8-31237439-1	chr8	31236939	31237939	+	720.5	f0_balb.idr	3' UTR (NM_001286424, exon 4 of 4)	3' UTR (NM_001286424, exon 4 of 4)	50108.0	NM_001286425	171167.0	Mm.334477	NM_134161	ENSMUSG00000046152	Fut10	fuc-TX|fut10A	fucosyltransferase 10	protein-coding	1.0	3.0	3.0	5.5	5.0	5.5
Merged-chr8-49773186-2	chr8	49772686	49773686	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	-594926.0	NR_046067	100039954.0	Mm.400419	NR_046067	ENSMUSG00000110281	Gm2516	-	predicted gene 2516	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-48329042-2	chr15	48328542	48329542	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081391, intron 6 of 70)	Lx5|LINE|L1	462947.0	NM_001081391	239420.0	Mm.309363	NM_001081391	ENSMUSG00000022311	Csmd3	4930500N14Rik|mKIAA1894	CUB and Sushi multiple domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101914756-2	chr5	101914256	101915256	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 24 of 66)	MTD|LTR|ERVL-MaLR	149626.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.0	0.0	2.0	0.0	0.0	1.0
Merged-chr12-73715182-2	chr12	73714682	73715682	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 9 of 13)	intron (NM_008856, intron 9 of 13)	130386.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23556591-2	chr13	23556091	23557091	+	720.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145713)	TTS (NM_145713)	1559.0	NM_145713	14957.0	Mm.247046	NM_145713	ENSMUSG00000052565	Hist1h1d	H1.3|H1D|H1f3|H1s-4	histone cluster 1, H1d	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-46974273-2	chr7	46973773	46974773	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_015609, intron 1 of 1)	Lx5b|LINE|L1	1638.0	NR_015609	97402.0	Mm.22314	NR_015609	ENSMUSG00000110001	C86187	-	expressed sequence C86187	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44801103-2	chr16	44800603	44801603	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19625.0	NM_207244	239849.0	Mm.445045	NM_207244	ENSMUSG00000062082	Cd200r4	F630107N04Rik|MCD200RLa	CD200 receptor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-56429251-3	chr13	56428673	56429673	+	720.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9182.0	NM_177809	328258.0	Mm.482177	NM_177809	ENSMUSG00000021509	Slc25a48	AU042651|E230025K15	solute carrier family 25, member 48	protein-coding	0.0	0.0	1.0	6.5	1.5	0.0
Merged-chr17-28069626-2	chr17	28069126	28070126	+	720.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013687, exon 7 of 10)	exon (NM_013687, exon 7 of 10)	10958.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0.0	0.0	1.0	8.0	0.0	0.0
Merged-chr4-95209958-2	chr4	95209458	95210458	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157736.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	4.5	0.5	3.5	4.5	4.0	6.0
Merged-chr6-129033621-4	chr6	129033120	129034120	+	720.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12281.0	NR_024263	232408.0	Mm.259262	NM_153094	ENSMUSG00000030154	Klrb1f	A630024B12Rik|Nkr-p1f|Nkrp1-f|Nkrp1f	killer cell lectin-like receptor subfamily B member 1F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6337328-2	chr19	6336828	6337828	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168489, intron 4 of 9)	intron (NM_001168489, intron 4 of 9)	2289.0	NM_008583	17283.0	Mm.12917	NM_008583	ENSMUSG00000024947	Men1	AW045611	multiple endocrine neoplasia 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166716463-2	chr2	166715963	166716963	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2631.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123083531-2	chr4	123083031	123084031	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21630.0	NM_007559	12164.0	Mm.439764	NM_007559	ENSMUSG00000002384	Bmp8b	Op3	bone morphogenetic protein 8b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76406222-2	chr12	76405722	76406722	+	720.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008301, exon 1 of 1)	exon (NM_008301, exon 1 of 1)	1852.0	NM_008301	15512.0	Mm.296181	NM_008301	ENSMUSG00000059970	Hspa2	70kDa|HSP70.2|HSP70A2|Hsp70-2	heat shock protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6551374-2	chr11	6550844	6551844	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190343, intron 1 of 8)	ID_B1|SINE|B4	4457.0	NM_001190343	216527.0	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	0.0	4.5	3.0	0.0	4.0	3.5
Merged-chr5-29289418-2	chr5	29288918	29289918	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020295, intron 8 of 16)	intron (NM_020295, intron 8 of 16)	88972.0	NM_020295	56873.0	Mm.41572	NM_020295	ENSMUSG00000010721	Lmbr1	1110048D14Rik|AU017641	limb region 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58538930-2	chr9	58538430	58539430	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133983, intron 1 of 6)	ORR1D1|LTR|ERVL-MaLR	2010.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47601301-2	chr17	47600801	47601801	+	720.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016859, exon 7 of 7)	3' UTR (NM_016859, exon 7 of 7)	7834.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-100367481-2	chr6	100366981	100367981	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80123.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80944847-2	chr12	80944347	80945347	+	720.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347416)	promoter-TSS (NM_001347416)	552.0	NR_045057	100504661.0	Mm.442322	NR_045057	ENSMUSG00000112880	Gm20337	-	predicted gene, 20337	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37537920-2	chr9	37537420	37538420	+	720.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_136939, exon 7 of 7)	non-coding (NR_136939, exon 7 of 7)	-1335.0	NM_020518	57276.0	Mm.27478	NM_020518	ENSMUSG00000001943	Vsig2	1190004B15Rik|2210413P10Rik|AU040484|CTX|Ctm	V-set and immunoglobulin domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-28164113-2	chr5	28163613	28164613	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1583.0	NM_010134	13799.0	Mm.4298	NM_010134	ENSMUSG00000039095	En2	BB131122|En-2	engrailed 2	protein-coding	1.0	0.0	0.0	1.0	0.0	0.0
Merged-chr3-103805857-2	chr3	103805357	103806357	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040412, intron 4 of 4)	intron (NR_040412, intron 4 of 4)	2728.0	NR_040412	100503157.0	Mm.445554	NR_040412	ENSMUSG00000084997	Gm15471	-	predicted gene 15471	ncRNA	28.5	53.0	39.0	27.5	48.0	45.5
Merged-chr12-8941306-2	chr12	8940806	8941806	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6623.0	NM_010770	17182.0	Mm.42226	NM_010770	ENSMUSG00000020583	Matn3	AV009181	matrilin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55496559-2	chr12	55496059	55497059	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3912.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120061496-2	chr10	120060996	120061996	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358809, intron 22 of 23)	intron (NM_001358809, intron 22 of 23)	51469.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32586352-2	chr2	32585852	32586852	+	720.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276425)	promoter-TSS (NM_001276425)	-726.0	NM_001276425	20448.0	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71133864-2	chr17	71133364	71134364	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49668.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134454922-2	chr5	134454422	134455422	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081462, intron 1 of 29)	intron (NM_001081462, intron 1 of 29)	1340.0	NM_001081465	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86665119-2	chr6	86664619	86665619	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010751, intron 2 of 5)	intron (NM_010751, intron 2 of 5)	4040.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76178072-2	chr12	76177572	76178572	+	720.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104386)	promoter-TSS (NR_104386)	-813.0	NR_104386	13983.0	Mm.2561	NM_010157	ENSMUSG00000021055	Esr2	ER[b]|ERbeta|Estrb	estrogen receptor 2 (beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-42346133-2	chr6	42345633	42346633	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3695.0	NM_001289619	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-108651981-2	chr5	108651481	108652481	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357029, intron 15 of 22)	intron (NM_001357029, intron 15 of 22)	-8350.0	NM_008325	15932.0	Mm.358608	NM_008325	ENSMUSG00000033540	Idua	6030426D08	iduronidase, alpha-L-	protein-coding	0.0	2.0	0.0	0.0	0.0	0.0
Merged-chr6-47562546-4	chr6	47561985	47562985	+	720.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146689, intron 3 of 19)	intron (NM_001146689, intron 3 of 19)	32545.0	NM_001146689	14056.0	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155863089-3	chr1	155862547	155863547	+	720.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001039184, exon 34 of 38)	exon (NM_001039184, exon 34 of 38)	-50148.0	NM_001024945	104009.0	Mm.27035	NM_023268	ENSMUSG00000033684	Qsox1	1300003H02Rik|QSOX|Qscn6|SOx|b2b2673Clo	quiescin Q6 sulfhydryl oxidase 1	protein-coding	0.0	7.5	5.5	1.0	12.5	5.5
Merged-chr6-49012416-4	chr6	49011904	49012904	+	720.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12788.0	NR_126454	75347.0	Mm.207324	NR_126454	ENSMUSG00000107656	4930563H07Rik	-	RIKEN cDNA 4930563H07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99333671-4	chr12	99333184	99334184	+	720.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 3 of 5)	intron (NM_183186, intron 3 of 5)	116390.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-88194591-2	chr11	88194086	88195086	+	720.416626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_198013)	TTS (NM_198013)	480.0	NM_001291270	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	6.5	0.5	2.0	3.5	2.0	1.0
Merged-chr3-59204335-5	chr3	59203798	59204798	+	720.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	6584.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9099866-3	chr13	9099366	9100366	+	720.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 1 of 17)	intron (NM_172585, intron 1 of 17)	5985.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-108249720-2	chr11	108249220	108250220	+	720.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	94168.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34146188-2	chr10	34145634	34146634	+	720.349976	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-18162.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64096296-2	chr9	64095796	64096796	+	720.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15535.0	NR_040743	76814.0	Mm.243771	NR_040743		Scarletltr	2600006L11Rik	Scarletltr, erythroid developmental long intergenic non-protein coding transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-72310299-4	chr12	72309809	72310809	+	720.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153457, intron 1 of 8)	intron (NM_153457, intron 1 of 8)	-73582.0	NM_001007596	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0.0	3.0	0.0	0.0	3.0	0.0
Merged-chr12-83582239-3	chr12	83581739	83582739	+	720.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359167, intron 3 of 12)	intron (NM_001359167, intron 3 of 12)	14983.0	NM_001359167	217695.0	Mm.59257	NM_183154	ENSMUSG00000042628	Zfyve1	DFCP1|G630053K23|TAFF1|ZNFN2A1|mKIAA1589	zinc finger, FYVE domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87531198-3	chr6	87530721	87531721	+	720.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	MER5A|DNA|hAT-Charlie	2038.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78864651-1	chr15	78864151	78865151	+	720.333313	f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-9122.0	NM_025622	107753.0	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	142.0	215.0	207.5	97.5	218.5	209.5
Merged-chr1-144775480-1	chr1	144774980	144775980	+	720.333313	f0_balb.idr	promoter-TSS (NM_022881)	promoter-TSS (NM_022881)	-53.0	NM_022881	64214.0	Mm.253927	NM_022881	ENSMUSG00000026357	Rgs18	-	regulator of G-protein signaling 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53825040-3	chr19	53824553	53825553	+	720.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170847, intron 5 of 13)	intron (NM_001170847, intron 5 of 13)	-67178.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110271887-4	chr11	110271381	110272381	+	720.325012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_147219, exon 39 of 39)	3' UTR (NM_147219, exon 39 of 39)	-20105.0	NM_001166557	76184.0	Mm.159704	NM_147218	ENSMUSG00000044749	Abca6	6330565N06Rik	ATP-binding cassette, sub-family A (ABC1), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80095886-3	chr7	80095416	80096416	+	720.285706	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173011, intron 8 of 10)	intron (NM_173011, intron 8 of 10)	19434.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98654473-2	chr7	98653973	98654973	+	720.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172280, intron 2 of 19)	intron (NM_172280, intron 2 of 19)	2096.0	NM_172280	233545.0	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79685040-2	chr10	79684540	79685540	+	720.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_177613, exon 3 of 5)	exon (NM_177613, exon 3 of 5)	2845.0	NM_001359817	216150.0	Mm.21981	NM_177613	ENSMUSG00000020307	Cdc34	AI327276|E2-CDC34|UBE2R1	cell division cycle 34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170120548-2	chr2	170120048	170121048	+	720.25	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001159683, exon 3 of 7)	5' UTR (NM_001159683, exon 3 of 7)	10672.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79977964-2	chr10	79977464	79978464	+	720.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_130455)	TTS (NM_130455)	6296.0	NM_001359632	216157.0	Mm.29442	NM_001003949	ENSMUSG00000013858	Tmem259	AC087114.7gm2|ORF61|R32184_3|mFLJ00277	transmembrane protein 259	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136600784-2	chr1	136600287	136601287	+	720.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24114.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34997855-2	chr17	34997355	34998355	+	720.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_033075, exon 2 of 2)	exon (NM_033075, exon 2 of 2)	2891.0	NM_033075	110956.0	Mm.22506	NM_033075		D17H6S56E-5	G7e	DNA segment, Chr 17, human D6S56E 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12248543-2	chr17	12248043	12249043	+	720.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357722, intron 13 of 25)	intron (NM_001357722, intron 13 of 25)	70117.0	NM_011948	26407.0	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-42860575-3	chr17	42860078	42861078	+	720.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009847, intron 1 of 17)	ORR1E|LTR|ERVL-MaLR	15846.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	7.5	15.0	23.0	26.5	38.5	25.0
Merged-chr15-73755334-4	chr15	73754830	73755830	+	720.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001166389, exon 4 of 6)	exon (NM_001166389, exon 4 of 6)	7304.0	NM_008975	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118423741-3	chr14	118423174	118424174	+	720.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	57796.0	NR_045624	73306.0	Mm.362328	NR_045624	ENSMUSG00000099911	1700044C05Rik	-	RIKEN cDNA 1700044C05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148074751-3	chr4	148074254	148075254	+	720.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	13310.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141302059-3	chr4	141301491	141302491	+	720.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010139, intron 1 of 16)	intron (NM_010139, intron 1 of 16)	770.0	NM_010139	13836.0	Mm.2581	NM_010139	ENSMUSG00000006445	Epha2	AW545284|Eck|Myk2|Sek-2|Sek2	Eph receptor A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30196885-4	chr2	30196429	30197429	+	720.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356475, intron 1 of 13)	intron (NM_001356475, intron 1 of 13)	8918.0	NM_001356475	70266.0	Mm.216089	NM_172404	ENSMUSG00000039648	Kyat1	2010009K05Rik|AI182306|Ccbl1|Gtk|Kat1|KatI	kynurenine aminotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-28918758-2	chr19	28918258	28919258	+	720.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-45162.0	NM_028922	74411.0	Mm.441887	NM_028922	ENSMUSG00000040105	Plpp6	4932443D16Rik|Ppapdc2	phospholipid phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-33768958-2	chr1	33768458	33769458	+	720.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359274, intron 12 of 13)	intron (NM_001359274, intron 12 of 13)	-11208.0	NM_145392	213539.0	Mm.247037	NM_145392	ENSMUSG00000042215	Bag2	2610042A13Rik|BC016230	BCL2-associated athanogene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41918582-2	chr13	41918082	41919082	+	720.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52667.0	NR_033545	100038577.0	Mm.387093	NR_033545	ENSMUSG00000113856	Gm10790	-	predicted gene 10790	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127587336-2	chr10	127586790	127587790	+	720.166626	f0_balb.idr|f1_balb.idr	intron (NM_008512, intron 15 of 88)	intron (NM_008512, intron 15 of 88)	33858.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	15.5	10.5	15.5	1.0	13.5	22.0
Merged-chr7-128220194-2	chr7	128219740	128220740	+	720.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-13874.0	NM_009943	12862.0	Mm.43824	NM_009943	ENSMUSG00000030785	Cox6a2	CoxVIaH|VIaH	cytochrome c oxidase subunit VIa polypeptide 2	protein-coding	0.0	2.0	3.5	4.0	1.5	3.0
Merged-chr11-114887566-4	chr11	114887050	114888050	+	720.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-2491.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153984174-2	chr2	153983674	153984674	+	720.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080811, intron 2 of 10)	intron (NM_001080811, intron 2 of 10)	9229.0	NM_001080811	545477.0	Mm.379973	NM_001080811	ENSMUSG00000078998	Bpifa6	EG545477|Gm5840|Splunc6	BPI fold containing family A, member 6	protein-coding	0.0	2.5	0.5	0.0	1.0	0.0
Merged-chr13-34963822-4	chr13	34963274	34964274	+	720.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026947)	promoter-TSS (NM_026947)	35.0	NM_026947	69123.0	Mm.482475	NM_026947	ENSMUSG00000021416	Eci3	1810022C23Rik|Kseg2	enoyl-Coenzyme A delta isomerase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-5047493-4	chr7	5047005	5048005	+	720.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-4027.0	NM_026900	68992.0	Mm.41484	NM_026900	ENSMUSG00000055633	Zfp580	1500015O20Rik|AI838225|Znf580	zinc finger protein 580	protein-coding	1.5	0.0	0.0	1.5	0.0	0.0
Merged-chr6-89425101-2	chr6	89424601	89425601	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 4 of 6)	intron (NM_001167736, intron 4 of 6)	-62488.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100578490-2	chr12	100578010	100579010	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153587, intron 8 of 17)	intron (NM_153587, intron 8 of 17)	-57688.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	6.0	4.0	7.5	1.0	0.0	1.0
Merged-chr3-105720012-1	chr3	105719512	105720512	+	720.0	f1_balb.idr	3' UTR (NM_175398, exon 2 of 2)	3' UTR (NM_175398, exon 2 of 2)	14554.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	0.0	6.5	0.0	2.0	7.5	2.0
Merged-chr16-76361160-2	chr16	76360660	76361660	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	B1_Mus2|SINE|Alu	11889.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133607252-1	chr4	133606752	133607752	+	720.0	f1_c57bl6.idr	3' UTR (NM_001017968, exon 8 of 8)	3' UTR (NM_001017968, exon 8 of 8)	-5084.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	0.0	1.0	0.0	4.5	1.0	1.5
Merged-chr10-24790015-2	chr10	24789515	24790515	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134005, intron 17 of 24)	intron (NM_134005, intron 17 of 24)	46180.0	NM_134005	209558.0	Mm.338425	NM_134005	ENSMUSG00000019989	Enpp3	AI876438|CD203c	ectonucleotide pyrophosphatase/phosphodiesterase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94415448-1	chr11	94414948	94415948	+	720.0	f1_balb.idr	intron (NM_009783, intron 33 of 35)	intron (NM_009783, intron 33 of 35)	-22472.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72146602-3	chr6	72146096	72147096	+	720.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 4 of 6)	intron (NM_001035228, intron 4 of 6)	-23399.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	1.5	1.0	7.0	1.5	2.5	7.0
Merged-chr3-32427836-1	chr3	32427336	32428336	+	720.0	f0_balb.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-8315.0	NM_008839	18706.0	Mm.260521	NM_008839	ENSMUSG00000027665	Pik3ca	6330412C24Rik|caPI3K|p110|p110alpha	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86339603-3	chr1	86339092	86340092	+	720.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11693.0	NR_028478	100303740.0	Mm.154378	NR_028478	ENSMUSG00000064837	Snora75	MBI-55	small nucleolar RNA, H/ACA box 75	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60746972-2	chr13	60746472	60747472	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 19 of 26)	intron (NM_134062, intron 19 of 26)	39392.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0.0	11.5	4.0	2.5	1.0	4.0
Merged-chr10-59892313-2	chr10	59891813	59892813	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019965, intron 3 of 8)	intron (NM_019965, intron 3 of 8)	12722.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96231368-2	chr10	96230868	96231868	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110448, intron 1 of 2)	intron (NR_110448, intron 1 of 2)	5161.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-154335097-2	chr3	154334597	154335597	+	720.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_040387)	TTS (NR_040387)	4276.0	NR_040387	99686.0	Mm.38082	NR_040387	ENSMUSG00000093738	AI606473	-	expressed sequence AI606473	ncRNA	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr6-135297859-2	chr6	135297359	135298359	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12525.0	NM_029595	76400.0	Mm.293018	NM_029595	ENSMUSG00000047104	Pbp2	1700023A18Rik|AI326308|Pebp-2|Pebp2	phosphatidylethanolamine binding protein 2	protein-coding	11.5	14.0	23.0	20.5	22.5	43.0
Merged-chr7-145287908-2	chr7	145287408	145288408	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3897.0	NR_132642	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	0.0	0.0	1.0	0.0	1.0	0.0
Merged-chr2-84633287-3	chr2	84632761	84633761	+	720.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007615, intron 1 of 19)	intron (NM_007615, intron 1 of 19)	16219.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	8.0	28.0	13.0	7.5	20.5	19.0
Merged-chr10-8725130-2	chr10	8724635	8725635	+	720.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175155, exon 20 of 20)	3' UTR (NM_175155, exon 20 of 20)	160935.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.0	4.5	0.0	1.0	5.0	3.0
Merged-chr5-25663881-2	chr5	25663381	25664381	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	41916.0	NM_020570	57434.0	Mm.143767	NM_020570	ENSMUSG00000028933	Xrcc2	4921524O04Rik|8030409M04Rik|RAD51|RecA	X-ray repair complementing defective repair in Chinese hamster cells 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43611821-1	chr17	43611321	43612321	+	720.0	f1_balb.idr	intron (NM_013737, intron 11 of 11)	intron (NM_013737, intron 11 of 11)	18478.0	NM_001161366	210510.0	Mm.329058	NM_198418	ENSMUSG00000040140	Tdrd6	AB097085|Tdr2	tudor domain containing 6	protein-coding	2.0	2.5	6.0	1.5	0.0	1.0
Merged-chr10-20077731-2	chr10	20077216	20078216	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 12 of 29)	intron (NM_008580, intron 12 of 29)	-71204.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0.0	2.5	6.5	2.5	14.0	6.0
Merged-chr11-107477939-2	chr11	107477439	107478439	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-1589.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59555644-2	chr11	59555144	59556144	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 5 of 9)	intron (NR_153314, intron 5 of 9)	12958.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88216126-2	chr1	88215626	88216626	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201642, intron 3 of 4)	intron (NM_201642, intron 3 of 4)	4167.0	NM_201645	394436.0	Mm.300095	NM_201645	ENSMUSG00000089960	Ugt1a1	Gnt1|UDPGT 1-1|UGT1A01|Udpgt-1a|UgtBr1	UDP glucuronosyltransferase 1 family, polypeptide A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29618757-2	chr2	29618257	29619257	+	720.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039087)	promoter-TSS (NM_001039087)	-963.0	NM_054050	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118621052-2	chr9	118620552	118621552	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	14343.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68807924-2	chr11	68807424	68808424	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175260, intron 34 of 40)	intron (NM_175260, intron 34 of 40)	45207.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3628208-2	chr4	3627707	3628707	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-28299.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	14.0	15.0	16.5	16.0	21.0	9.0
Merged-chr4-148628001-2	chr4	148627503	148628503	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1007.0	NM_001003899	230908.0	Mm.22453	NM_145556	ENSMUSG00000041459	Tardbp	1190002A23Rik|C85084|TDP-43|Tdp43	TAR DNA binding protein	protein-coding	5.0	4.5	8.0	5.0	10.5	7.5
Merged-chr3-103207257-2	chr3	103206757	103207757	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A|LTR|ERVL	35602.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	1.0	4.0	10.5	1.5	6.5	11.0
Merged-chr7-143602262-2	chr7	143601762	143602762	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-2172.0	NM_013742	27267.0	Mm.125659	NM_013742	ENSMUSG00000010755	Cars	CA3	cysteinyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	10.5	1.5
Merged-chr17-7892914-2	chr17	7892414	7893414	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33086.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107669022-2	chr11	107668522	107669522	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198298, intron 27 of 31)	intron (NM_198298, intron 27 of 31)	31300.0	NR_105897	102465562.0		NR_105897	ENSMUSG00000098497	Mir6932	Gm27691|mmu-mir-6932	microRNA 6932	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-40968333-2	chr14	40967833	40968833	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1437.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32700277-2	chr2	32699777	32700777	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	-6102.0	NM_010236	14287.0	Mm.3830	NM_010236	ENSMUSG00000009566	Fpgs	AA408187	folylpolyglutamyl synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78273885-1	chr15	78273385	78274385	+	720.0	f1_c57bl6.idr	Intergenic	Intergenic	10964.0	NR_106137	102465776.0		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	0.0	1.5	0.0	0.5	0.0	0.5
Merged-chr11-23304376-2	chr11	23303876	23304876	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2519.0	NM_001190401	17847.0	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81168202-1	chr7	81167702	81168702	+	720.0	f1_c57bl6.idr	intron (NM_001004184, intron 15 of 17)	intron (NM_001004184, intron 15 of 17)	-45602.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	4.0	3.0	1.0	4.0	0.5	0.5
Merged-chr18-61115445-1	chr18	61114945	61115945	+	720.0	f1_c57bl6.idr	intron (NM_001037859, intron 7 of 21)	intron (NM_001037859, intron 7 of 21)	-2023.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	27.0	54.0	48.5	23.5	49.5	36.5
Merged-chr7-44248342-2	chr7	44247842	44248842	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025880, intron 2 of 5)	intron (NM_025880, intron 2 of 5)	-1513.0	NR_028534	100217434.0		NR_028534	ENSMUSG00000096296	Snord88c	MBII-180	small nucleolar RNA, C/D box 88C	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-74223822-2	chr7	74223322	74224322	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-210140.0	NM_009181	20450.0	Mm.4954	NM_009181	ENSMUSG00000025789	St8sia2	AI323367|ST8SiaII|STX|Siat8b	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90515038-2	chr7	90514538	90515538	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39043.0	NM_026734	68472.0	Mm.289791	NM_026734	ENSMUSG00000030614	Tmem126b	1110001A23Rik	transmembrane protein 126B	protein-coding	0.5	0.0	0.0	0.5	0.0	0.0
Merged-chr2-84637675-1	chr2	84637175	84638175	+	720.0	f0_balb.idr	intron (NM_007615, intron 1 of 19)	PB1D10|SINE|Alu	11805.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	1.0	8.0	2.5	14.0	3.0	9.5
Merged-chr2-112367474-3	chr2	112366940	112367940	+	720.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026519, exon 2 of 5)	exon (NM_026519, exon 2 of 5)	587.0	NM_026519	68032.0	Mm.220942	NM_026519	ENSMUSG00000027131	Emc4	2610318K02Rik|Tmem85	ER membrane protein complex subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-26366117-3	chr12	26365599	26366599	+	720.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130981, intron 3 of 4)	intron (NR_130981, intron 3 of 4)	19389.0	NR_130981	75243.0	Mm.444753	NR_130981	ENSMUSG00000114048	4930549C15Rik	-	RIKEN cDNA 4930549C15 gene	ncRNA	3.5	3.0	5.5	10.0	0.5	1.0
Merged-chr5-134574259-2	chr5	134573759	134574759	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	2183.0	NR_106087	102465708.0		NR_106087	ENSMUSG00000106323	Mir7228	mmu-mir-7228	microRNA 7228	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47518842-2	chr14	47518342	47519342	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027414, intron 4 of 5)	intron (NR_027414, intron 4 of 5)	46281.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	1.0	7.0	0.0	0.0	0.0	4.0
Merged-chr4-3809114-2	chr4	3808639	3809639	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	26516.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	1.0	5.5	2.5	1.0	6.0	5.0
Merged-chr19-24999926-1	chr19	24999426	25000426	+	720.0	f1_balb.idr	intron (NM_028785, intron 1 of 47)	CpG	397.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	107.5	252.5	192.5	91.0	185.0	143.5
Merged-chr3-41034753-2	chr3	41034253	41035253	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	48293.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90661026-2	chr5	90660526	90661526	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20499.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	1.0	0.0	1.5	0.0	0.0	3.5
Merged-chr4-133246346-1	chr4	133245846	133246846	+	720.0	f1_balb.idr	exon (NM_016693, exon 9 of 29)	exon (NM_016693, exon 9 of 29)	5528.0	NM_016693	53608.0	Mm.36640	NM_016693	ENSMUSG00000028862	Map3k6	Ask2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding	1.0	3.5	0.0	0.0	0.5	1.0
Merged-chr5-21139684-1	chr5	21139184	21140184	+	720.0	f0_balb.idr	Intergenic	Intergenic	-36595.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120175985-1	chr6	120175485	120176485	+	720.0	f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-17838.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	12.5	33.5	23.5	6.5	37.0	7.5
Merged-chr2-68563529-2	chr2	68563029	68564029	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18884.0	NM_177651	227998.0	Mm.67562	NM_177651	ENSMUSG00000053896	4933409G03Rik	-	RIKEN cDNA 4933409G03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-193889166-2	chr1	193888666	193889666	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A2|LTR|ERVK	333593.0	NR_040477	74942.0	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131243099-1	chr1	131242599	131243599	+	720.0	f1_balb.idr	intron (NM_018750, intron 1 of 5)	intron (NM_018750, intron 1 of 5)	2079.0	NM_001313731	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	0.0	0.0	0.0	2.0	3.0	0.0
Merged-chr12-79016228-2	chr12	79015822	79016822	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9045.0	NM_178745	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	6.0	30.5	26.0	75.5	160.0	123.0
Merged-chr6-49319901-1	chr6	49319401	49320401	+	720.0	f1_c57bl6.idr	intron (NM_001311112, intron 1 of 3)	intron (NM_001311112, intron 1 of 3)	627.0	NM_001311112	57895.0	Mm.32416	NM_175098	ENSMUSG00000050786	Ccdc126	6330407D12Rik|AA675040|AI465320|AL022711	coiled-coil domain containing 126	protein-coding	29.0	39.0	37.0	10.5	62.5	40.0
Merged-chr11-89015321-2	chr11	89014740	89015740	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009546, intron 6 of 8)	intron (NM_009546, intron 6 of 8)	15837.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	13.5	30.5	23.0	8.0	19.0	12.5
Merged-chr11-63029281-2	chr11	63028781	63029781	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25147.0	NR_126547	74884.0	Mm.363520	NR_126547	ENSMUSG00000087604	Cdrt4os1	4930452L02Rik	CMT1A duplicated region transcript 4, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136988723-2	chr6	136988236	136989236	+	720.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	34213.0	NM_023898	78600.0	Mm.290622	NM_023898	ENSMUSG00000064330	Pde6h	A930033D18Rik|PDEgamma	phosphodiesterase 6H, cGMP-specific, cone, gamma	protein-coding	11.5	41.5	29.0	5.0	7.5	2.0
Merged-chr4-149649404-2	chr4	149648904	149649904	+	720.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001290989)	TTS (NM_001290989)	6163.0	NR_105990	102465983.0		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	3.5	0.0	0.0	1.5	0.5	0.0
Merged-chr10-129355645-2	chr10	129355145	129356145	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	5080.0	NM_001011797	257985.0	Mm.422962	NM_001011797	ENSMUSG00000095075	Olfr782	MOR110-8	olfactory receptor 782	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-70355086-1	chr16	70354586	70355586	+	720.0	f0_balb.idr	intron (NM_028803, intron 1 of 15)	Lx8|LINE|L1	41137.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	2.0	0.0	9.0	9.0	6.5	7.5
Merged-chr2-8165487-2	chr2	8164987	8165987	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-769289.0	NM_001110231	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112367827-2	chr13	112367327	112368327	+	720.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029898, exon 9 of 11)	exon (NM_029898, exon 9 of 11)	79309.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126764939-2	chr7	126764439	126765439	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011952, intron 8 of 8)	intron (NM_011952, intron 8 of 8)	-1475.0	NM_024228	68616.0	Mm.246881	NM_024228	ENSMUSG00000030703	Gdpd3	1110015E22Rik	glycerophosphodiester phosphodiesterase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142743591-2	chr5	142743091	142744091	+	720.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001122730, exon 17 of 28)	exon (NM_001122730, exon 17 of 28)	41490.0	NM_146257	243328.0	Mm.125942	NM_146257	ENSMUSG00000050822	Slc29a4	ENT4|mPMAT	solute carrier family 29 (nucleoside transporters), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-8560168-1	chr1	8559668	8560668	+	720.0	f1_c57bl6.idr	intron (NM_027671, intron 14 of 20)	RMER17D2|LTR|ERVK	739709.0	NM_001290393	71096.0	Mm.336395	NM_027671	ENSMUSG00000025909	Sntg1	4933426D16Rik|G1SYN|SYN4	syntrophin, gamma 1	protein-coding	0.5	0.0	0.0	1.5	0.0	0.0
Merged-chr17-46893929-2	chr17	46893429	46894429	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3308.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-71760530-2	chr1	71760030	71761030	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	107195.0	NR_040308	100042814.0	Mm.405775	NR_040308	ENSMUSG00000073652	Apol7d	Gm15456	apolipoprotein L 7d	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132509438-1	chr2	132508938	132509938	+	720.0	f0_balb.idr	intron (NR_028286, intron 1 of 3)	intron (NR_028286, intron 1 of 3)	18710.0	NR_028286	70371.0	Mm.394667	NR_028286	ENSMUSG00000086379	1700026D11Rik	-	RIKEN cDNA 1700026D11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121543719-2	chr5	121543219	121544219	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010765, intron 1 of 13)	intron (NM_010765, intron 1 of 13)	2173.0	NM_010765	17165.0	Mm.272206	NM_010765	ENSMUSG00000029454	Mapkapk5	MK5|PRAK	MAP kinase-activated protein kinase 5	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr10-44533503-3	chr10	44533013	44534013	+	720.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74765.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-28841233-2	chr2	28840733	28841733	+	720.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166033)	promoter-TSS (NM_001166033)	827.0	NM_001033294	227674.0	Mm.44179	NM_001033294	ENSMUSG00000026806	Ddx31	5830444G11Rik|Gm997	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-112835649-1	chr10	112835149	112836149	+	720.0	f0_balb.idr	Intergenic	L1M3|LINE|L1	-2103.0	NR_152199	100042639.0	Mm.403280	NR_152199		Gm3942	-	predicted gene 3942	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-75799300-1	chr13	75798800	75799800	+	720.0	f1_balb.idr	Intergenic	RLTR13D6|LTR|ERVK	-40585.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	4.0	10.0	0.0	3.5	13.5	2.0
Merged-chr12-24786619-1	chr12	24786119	24787119	+	720.0	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-44980.0	NM_026037	67216.0	Mm.167671	NM_026037	ENSMUSG00000020646	Mboat2	2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2	membrane bound O-acyltransferase domain containing 2	protein-coding	0.5	2.0	9.5	23.5	22.0	18.5
Merged-chr2-4591142-3	chr2	4590658	4591658	+	720.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 5 of 11)	intron (NM_001177844, intron 5 of 11)	31404.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20552711-2	chr16	20552211	20553211	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013852, intron 14 of 20)	intron (NM_013852, intron 14 of 20)	4108.0	NM_013852	27406.0	Mm.27135	NM_013852	ENSMUSG00000003234	Abcf3	AI326318|AU016058|BB119416	ATP-binding cassette, sub-family F (GCN20), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-123172979-2	chr6	123172479	123173479	+	720.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004159)	promoter-TSS (NM_001004159)	-44.0	NM_001004159	381809.0	Mm.333372	NM_001004159	ENSMUSG00000067767	Clec4b2	Aplra1|F830043G12Rik|mDCAR1	C-type lectin domain family 4, member b2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50633339-2	chr9	50632839	50633839	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15875.0	NM_001134902	270156.0	Mm.335149	NM_212449	ENSMUSG00000059820	AU019823	Gm639	expressed sequence AU019823	protein-coding	0.0	2.0	0.0	0.0	0.0	1.5
Merged-chr19-16773754-2	chr19	16773254	16774254	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173028, intron 1 of 71)	intron (NM_173028, intron 1 of 71)	7179.0	NM_173028	271564.0	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-31400452-6	chr10	31399943	31400943	+	719.922241	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359365, intron 1 of 6)	RLTR22_Mur|LTR|ERVK	13992.0	NM_011509	100041294.0	Mm.7821	NM_011509		Supt4b	Gm3258|Supt4h1b|Supt4h2	suppressor of Ty 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-157502958-4	chr1	157502455	157503455	+	719.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151610, intron 1 of 2)	intron (NR_151610, intron 1 of 2)	-3841.0	NM_033354	89867.0	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr4-35061112-3	chr4	35060601	35061601	+	719.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 2 of 3)	MT2B1|LTR|ERVL	-90954.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41712619-3	chr4	41712123	41713123	+	719.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027278, exon 2 of 2)	exon (NM_027278, exon 2 of 2)	894.0	NM_027278	69961.0	Mm.425182	NM_027278	ENSMUSG00000036114	Rpp25l	2810432D09Rik|AW987258|Rppl25	ribonuclease P/MRP 25 subunit-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150855840-3	chr4	150855354	150856354	+	719.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040649)	promoter-TSS (NR_040649)	784.0	NM_133753	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153532391-4	chr1	153531883	153532883	+	719.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028749, intron 4 of 11)	intron (NM_028749, intron 4 of 11)	17331.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43888750-2	chr5	43888282	43889282	+	719.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	B4A|SINE|B4	19973.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.0	2.0	0.0	0.0	13.5	4.5
Merged-chr9-21787102-2	chr9	21786602	21787602	+	719.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_145611, intron 3 of 11)	intron (NM_145611, intron 3 of 11)	11444.0	NM_145611	235041.0	Mm.257371	NM_145611	ENSMUSG00000032194	Kank2	AI504612|Ankrd25|BC010245	KN motif and ankyrin repeat domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101241876-2	chr15	101241376	101242376	+	719.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16690.0	NR_045328	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95204154-4	chr8	95203661	95204661	+	719.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61621.0	NM_001145831	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54699002-3	chr18	54698502	54699502	+	719.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	87258.0	NR_045400	328957.0	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-36267447-4	chr8	36266934	36267934	+	719.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-17918.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	0.5	8.5	1.0	3.5	4.0	3.5
Merged-chr17-71553102-3	chr17	71552602	71553602	+	719.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029254, intron 1 of 6)	RMER15|LTR|ERVL	1041.0	NM_029254	70891.0	Mm.477599	NM_029254	ENSMUSG00000052525	Spdya	4921517J08Rik|4930548B21Rik|GS4|MLZ-465|Spdy1	speedy/RINGO cell cycle regulator family, member A	protein-coding	0.0	6.5	4.0	6.5	0.0	0.5
Merged-chr2-75892224-3	chr2	75891740	75892740	+	719.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172666, intron 13 of 19)	intron (NM_172666, intron 13 of 19)	46222.0	NM_028235	72421.0	Mm.275109	NM_028235	ENSMUSG00000075273	Ttc30b	2510042P03Rik|Tcc30b	tetratricopeptide repeat domain 30B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122882629-2	chr8	122882129	122883129	+	719.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34255.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	2.5	0.5	0.0	1.5	0.0	0.0
Merged-chr10-4155741-3	chr10	4155240	4156240	+	719.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172308, exon 28 of 28)	3' UTR (NM_172308, exon 28 of 28)	57380.0	NR_152620	102632515.0	Mm.416995	NR_152620	ENSMUSG00000111266	Gm30570	-	predicted gene, 30570	ncRNA	0.0	0.0	1.0	2.5	4.5	2.0
Merged-chr7-19356336-2	chr7	19355836	19356836	+	719.791626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145822, exon 3 of 3)	3' UTR (NM_145822, exon 3 of 3)	3147.0	NM_145822	70333.0	Mm.171370	NM_145822	ENSMUSG00000047649	Cd3eap	1190028F09|2610103M17Rik|ASE-1|Ase1|CAST|PAF49	CD3E antigen, epsilon polypeptide associated protein	protein-coding	0.0	2.5	5.0	0.5	0.0	6.0
Merged-chr5-103693346-3	chr5	103692816	103693816	+	719.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37584.0	NM_001163550	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-49154036-3	chr14	49153524	49154524	+	719.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18222.0	NM_027492	70646.0	Mm.275688	NM_027492	ENSMUSG00000036282	Naa30	4930487N19Rik|5730533P17Rik|AI447922|AW322455|Nat12	N(alpha)-acetyltransferase 30, NatC catalytic subunit	protein-coding	0.0	1.5	1.5	15.0	3.5	4.5
Merged-chr5-99619201-3	chr5	99618697	99619697	+	719.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	109863.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-18327044-3	chr14	18326539	18327539	+	719.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009455, intron 2 of 5)	CpG	4805.0	NM_009455	22194.0	Mm.4429	NM_009455	ENSMUSG00000021774	Ube2e1	UbcM3|Ubce5|ubcM2	ubiquitin-conjugating enzyme E2E 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34233107-4	chr5	34232612	34233612	+	719.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 5 of 12)	intron (NM_001015039, intron 5 of 12)	-45402.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42126555-2	chr19	42126055	42127055	+	719.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_027106, intron 1 of 2)	intron (NM_027106, intron 1 of 2)	2438.0	NM_027106	69534.0	Mm.30060	NM_027106	ENSMUSG00000018821	Avpi1	2310008N12Rik|AA410041|VIT32|esu|mVIT32	arginine vasopressin-induced 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129302133-2	chr2	129301672	129302672	+	719.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010554, intron 6 of 6)	intron (NM_010554, intron 6 of 6)	4802.0	NR_040371	100503468.0	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	-	predicted gene 14023	ncRNA	3.5	13.0	3.0	12.5	13.0	9.0
Merged-chr19-8719471-2	chr19	8718971	8719971	+	719.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161413, intron 1 of 9)	B1_Mm|SINE|Alu	3898.0	NM_001161413	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45387653-4	chr14	45387180	45388180	+	719.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019425, intron 1 of 5)	intron (NM_019425, intron 1 of 5)	1116.0	NM_019425	54342.0	Mm.312945	NM_019425	ENSMUSG00000037722	Gnpnat1	AU017428|AU040593|EMeg32|Gpnat1|Gsnpat	glucosamine-phosphate N-acetyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67196483-2	chr17	67195961	67196961	+	719.75	f0_balb.idr|f1_balb.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	157998.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	1.0	14.5	15.5	10.5	11.0	11.5
Merged-chr5-24652235-4	chr5	24651751	24652751	+	719.729187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6798.0	NR_003953	72252.0	Mm.87446	NR_003953	ENSMUSG00000038165	1700022A21Rik	-	glycerol-3-phosphate dehydrogenase 1-like pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123973636-3	chr5	123973143	123974143	+	719.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145070)	promoter-TSS (NM_145070)	15.0	NM_145070	29816.0	Mm.149954	NM_145070	ENSMUSG00000000915	Hip1r	AA410023|mKIAA0655	huntingtin interacting protein 1 related	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19466982-3	chr7	19466532	19467532	+	719.7023929999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-8538.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	4.5	6.5	8.0	1.5	2.0	2.0
Merged-chr9-112180042-3	chr9	112179509	112180509	+	719.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177615)	TTS (NM_001177615)	5940.0	NM_001177618	74100.0	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45285541-1	chr4	45285041	45286041	+	719.666687	f0_balb.idr	exon (NM_001081172, exon 16 of 16)	exon (NM_001081172, exon 16 of 16)	-11627.0	NM_027266	69934.0	Mm.46761	NM_027266	ENSMUSG00000035601	Trmt10b	2610042J10Rik|Rg9mtd3|Rnmtd3	tRNA methyltransferase 10B	protein-coding	1.0	0.0	0.5	2.5	4.0	5.0
Merged-chr5-31821370-3	chr5	31820851	31821851	+	719.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 5 of 11)	intron (NM_144541, intron 5 of 11)	123301.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-92209921-3	chr6	92209425	92210425	+	719.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030081, intron 2 of 11)	intron (NM_030081, intron 2 of 11)	4886.0	NM_030081	78287.0	Mm.290734	NM_030081	ENSMUSG00000014550	Rbsn	5330426D11Rik|Zfyve20	rabenosyn, RAB effector	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88564280-1	chr10	88563780	88564780	+	719.666687	f0_c57.idr	intron (NM_175418, intron 8 of 28)	intron (NM_175418, intron 8 of 28)	40872.0	NM_001252372	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-4948158-1	chr6	4947658	4948658	+	719.666687	f0_balb.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	44838.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	4.0	1.0	3.0	15.0	5.5	3.0
Merged-chr10-61696391-2	chr10	61695891	61696891	+	719.666687	f1_balb.idr|f1_c57bl6.idr	exon (NM_001272090, exon 1 of 4)	exon (NM_001272090, exon 1 of 4)	805.0	NR_073587	71767.0	Mm.71514	NM_027912	ENSMUSG00000020087	Tysnd1	1300019N10Rik	trypsin domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85279821-1	chr1	85279321	85280321	+	719.666687	f1_balb.idr	Intergenic	Intergenic	-9255.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-93245818-3	chr15	93245323	93246323	+	719.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033275, intron 6 of 7)	ORR1F|LTR|ERVL-MaLR	29356.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-68956730-3	chr9	68956220	68957220	+	719.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013646, intron 1 of 10)	intron (NM_013646, intron 1 of 10)	191374.0	NR_033299	320440.0	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	1.0	5.5	0.0	0.0	0.0	0.0
Merged-chr4-138251886-2	chr4	138251422	138252422	+	719.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001099631, intron 1 of 9)	intron (NM_001099631, intron 1 of 9)	1511.0	NM_001099631	230863.0	Mm.482408	NM_001099631	ENSMUSG00000045349	Sh2d5	BC036961	SH2 domain containing 5	protein-coding	11.0	4.0	1.5	6.5	2.5	3.0
Merged-chr7-127767956-2	chr7	127767456	127768456	+	719.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172748, exon 11 of 11)	3' UTR (NM_172748, exon 11 of 11)	-1859.0	NM_198424	269999.0	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	0.0	0.0	0.5	0.0	0.0	1.5
Merged-chr5-93204817-2	chr5	93204317	93205317	+	719.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_017367, intron 1 of 6)	intron (NM_017367, intron 1 of 6)	1678.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	9.0	7.0	4.0	12.5	7.0	8.0
Merged-chr10-20882804-4	chr10	20882311	20883311	+	719.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69736.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	4.5	12.5	4.0	4.5	3.5	4.0
Merged-chr5-114379410-4	chr5	114378928	114379928	+	719.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159941, intron 1 of 6)	intron (NM_001159941, intron 1 of 6)	1077.0	NM_001159941	330171.0	Mm.238285	NM_026145	ENSMUSG00000001098	Kctd10	AW536343|C87062|mBACURD3	potassium channel tetramerisation domain containing 10	protein-coding	1.5	5.5	13.0	5.0	23.5	18.5
Merged-chr4-55650390-4	chr4	55649948	55650948	+	719.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117973.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	12.5	25.5	21.5	26.5	27.5	23.0
Merged-chr10-14209620-4	chr10	14209112	14210112	+	719.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	243233.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.5	0.0	5.5	0.0	0.0	6.5
Merged-chr4-139337226-3	chr4	139336715	139337715	+	719.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15361.0	NM_001290810	69902.0	Mm.27871	NM_023536	ENSMUSG00000028741	Mrto4	2610012O22Rik|Mg684|Mrt4	mRNA turnover 4, ribosome maturation factor	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr6-148896989-3	chr6	148896489	148897489	+	719.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301351)	promoter-TSS (NM_001301351)	-752.0	NM_181541	232560.0	Mm.150568	NM_181541	ENSMUSG00000030309	Caprin2	C1qdc1|Eeg1|rng140	caprin family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130473197-3	chr2	130472698	130473698	+	719.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355161, intron 1 of 21)	intron (NM_001355161, intron 1 of 21)	22920.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	24.5	57.5	51.5	58.5	98.5	91.5
Merged-chr10-44777408-4	chr10	44776905	44777905	+	719.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-289809.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18221372-2	chr2	18220872	18221872	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190817, intron 10 of 12)	RSINE1|SINE|B4	156787.0	NM_001252561	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38603201-2	chr16	38602701	38603701	+	719.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_020260, exon 12 of 12)	exon (NM_020260, exon 12 of 12)	40387.0	NM_026407	67846.0	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-47661629-2	chr5	47661129	47662129	+	719.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-321526.0	NR_111900	20563.0	Mm.289739	NM_178804	ENSMUSG00000031558	Slit2	Drad-1|E030015M03Rik|E130320P19Rik|Slil3|b2b1200.1Clo|mKIAA4141|slit-2	slit guidance ligand 2	protein-coding	2.5	0.0	0.0	2.5	4.0	0.0
Merged-chr17-47222160-2	chr17	47221660	47222660	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 3 of 19)	intron (NM_001097623, intron 3 of 19)	-8070.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-85322126-2	chr9	85321626	85322626	+	719.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001160378, exon 3 of 3)	3' UTR (NM_001160378, exon 3 of 3)	4998.0	NM_001160378	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67722478-2	chr10	67721978	67722978	+	719.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-150519.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102420602-2	chr12	102420102	102421102	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 2 of 13)	intron (NM_011175, intron 2 of 13)	19211.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153264966-2	chr2	153264466	153265466	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080463, intron 6 of 6)	intron (NM_080463, intron 6 of 6)	23434.0	NM_080463	140484.0	Mm.293761	NM_080463	ENSMUSG00000046020	Pofut1	O-FucT-1|mKIAA0180	protein O-fucosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-91274589-2	chr5	91274089	91275089	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040428, intron 3 of 5)	intron (NR_040428, intron 3 of 5)	8487.0	NR_040428	100503265.0	Mm.125059	NR_040428	ENSMUSG00000107198	Gm19619	-	predicted gene, 19619	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53051082-2	chr4	53050582	53051582	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 34 of 49)	intron (NM_013454, intron 34 of 49)	39202.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62229831-2	chr10	62229331	62230331	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 1 of 7)	B1F1|SINE|Alu	1387.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121561242-2	chr9	121560742	121561742	+	719.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25778.0	NR_040740	75384.0	Mm.445955	NR_040740	ENSMUSG00000084995	Lyzl4os	4930589B17Rik|4930596M17Rik	lysozyme-like 4, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93080394-2	chr1	93079894	93080894	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001294150, intron 1 of 46)	intron (NM_001294150, intron 1 of 46)	2086.0	NM_001294150	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41596826-2	chr10	41596326	41597326	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 30 of 47)	RMER10A|LTR|ERVL	28810.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-10838974-2	chr9	10838474	10839474	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033359, intron 1 of 20)	intron (NM_001033359, intron 1 of 20)	65752.0	NM_001033359	244682.0	Mm.187021	NM_001033359	ENSMUSG00000039488	Cntn5	6720426O10Rik|A830025P08Rik|Gm507|NB-2	contactin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102495904-3	chr12	102495360	102496360	+	719.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013747, intron 12 of 12)	intron (NM_013747, intron 12 of 12)	25950.0	NM_013747	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	11.5	10.0	13.0	4.5	4.0	23.5
Merged-chr8-122473187-2	chr8	122472687	122473687	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033142, intron 1 of 5)	intron (NM_001033142, intron 1 of 5)	2877.0	NM_001033142	68718.0	Mm.34356	NM_001033142	ENSMUSG00000014470	Rnf166	1110031E24Rik|AW555115|Zfp313l	ring finger protein 166	protein-coding	0.0	0.0	0.0	0.0	3.0	3.0
Merged-chr10-94038724-1	chr10	94038224	94039224	+	719.5	f0_c57.idr	intron (NM_053072, intron 1 of 20)	RSINE1|SINE|B4	2723.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	56.0	43.0	84.5	15.5	29.0	29.0
Merged-chr15-62395553-2	chr15	62395067	62396067	+	719.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-176116.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	7.0	0.0	3.0	12.5	8.0	4.0
Merged-chr10-80706597-2	chr10	80706097	80707097	+	719.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007460)	TTS (NM_007460)	3904.0	NM_027829	71564.0	Mm.35802	NM_027829	ENSMUSG00000055862	Izumo4	9030607L17Rik|AI550407	IZUMO family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27339136-2	chr14	27338636	27339636	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	3099.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.0	1.5	1.0	0.0	1.5	1.0
Merged-chr9-45754832-2	chr9	45754332	45755332	+	719.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73806.0	NM_001081373	214552.0	Mm.260103	NM_172531	ENSMUSG00000043987	Cep164	AI450905|BC027092|D030051D21|mKIAA1052	centrosomal protein 164	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71544860-2	chr6	71544360	71545360	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355675, intron 1 of 5)	B1_Mus1|SINE|Alu	507.0	NM_001355675	66700.0	Mm.181278	NM_025783	ENSMUSG00000053119	Chmp3	25.1|4921505F14Rik|9130011K15Rik|CGI-49|D6Ertd286e|NEDF|Vps24	charged multivesicular body protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4906609-2	chr12	4906109	4907109	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145441, intron 1 of 6)	intron (NM_145441, intron 1 of 6)	911.0	NM_145441	217379.0	Mm.259170	NM_145441	ENSMUSG00000020634	Ubxn2a	6330407P03Rik|Ubxd4	UBX domain protein 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97749851-2	chr7	97749368	97750368	+	719.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11621.0	NM_175105	66333.0	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	16.5	47.0	10.5	1.5	3.5	8.0
Merged-chr14-29967228-2	chr14	29966728	29967728	+	719.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1152.0	NM_019979	80795.0	Mm.104491	NM_019979	ENSMUSG00000042682	Selenok	1110001C03Rik|AA673253|HSPC030|Hsp30|Selk	selenoprotein K	protein-coding	1.5	11.0	7.5	0.0	3.0	2.5
Merged-chr13-54691079-2	chr13	54690579	54691579	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_027396, intron 1 of 10)	B4|SINE|B4	-2879.0	NM_001146027	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64132143-2	chr15	64131643	64132643	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 15 of 28)	intron (NM_001276461, intron 15 of 28)	-71695.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	1.0	8.0	1.5	4.0	3.0	0.0
Merged-chr14-120409359-2	chr14	120408859	120409859	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 8 of 8)	intron (NM_001360376, intron 8 of 8)	-69102.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4885042-2	chr16	4884542	4885542	+	719.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1058.0	NM_001357062	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35302605-2	chr17	35302105	35303105	+	719.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-17942.0	NM_010390	15006.0	Mm.466882	NM_010390	ENSMUSG00000079507	H2-Q1	H-2Q1|Q1|Q1b|Q1d|Q1k|Qa-1|Qa1|Qed-1	histocompatibility 2, Q region locus 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3662696-2	chr2	3662196	3663196	+	719.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50762.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120508551-2	chr8	120508051	120509051	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	19685.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88748158-2	chr3	88747658	88748658	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018804, intron 3 of 3)	URR1A|DNA|hAT-Charlie	24441.0	NM_018804	229521.0	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119810840-2	chr13	119810340	119811340	+	719.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A|LTR|ERVK	19377.0	NM_001001449	380878.0	Mm.327311	NM_001001449	ENSMUSG00000094237	AF067063	-	cDNA sequence AF067063	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-109891813-2	chr2	109891313	109892313	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011699, intron 1 of 4)	intron (NM_011699, intron 1 of 4)	935.0	NM_011699	22343.0	Mm.235300	NM_011699	ENSMUSG00000027162	Lin7c	9130007B12Rik|AI303698|AU019331|AW125731|D2Ertd520e|LIN-7-C|LIN-7C|MALS-3|Veli3	lin-7 homolog C (C. elegans)	protein-coding	16.0	6.0	28.0	13.0	8.0	34.0
Merged-chr2-152106437-2	chr2	152105937	152106937	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029688, intron 1 of 1)	intron (NM_029688, intron 1 of 1)	913.0	NM_029688	76650.0	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81306249-2	chr10	81305749	81306749	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 4 of 17)	intron (NM_001293647, intron 4 of 17)	13286.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54651741-1	chr14	54651241	54652241	+	719.5	f1_c57bl6.idr	exon (NM_001085472, exon 3 of 13)	exon (NM_001085472, exon 3 of 13)	1230.0	NR_038053	75913.0	Mm.474799	NR_038053		4930579G18Rik	-	RIKEN cDNA 4930579G18 gene	ncRNA	0.5	8.0	23.5	7.0	26.0	7.5
Merged-chr5-90773035-2	chr5	90772535	90773535	+	719.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_019932, exon 2 of 3)	exon (NM_019932, exon 2 of 3)	600.0	NM_019932	56744.0	Mm.332490	NM_019932	ENSMUSG00000029373	Pf4	Cxcl4|Scyb4	platelet factor 4	protein-coding	8.0	23.5	5.5	19.0	19.0	11.0
Merged-chr5-79976701-2	chr5	79976201	79977201	+	719.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL2|LINE|L1	-1043870.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.0	1.5	2.5	0.0	0.0	0.0
Merged-chr4-105153489-2	chr4	105152989	105153989	+	719.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3858.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.0	1.0	2.0	0.0	1.0	2.0
Merged-chr7-132807145-2	chr7	132806645	132807645	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	6051.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60675424-2	chr13	60674928	60675928	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	73217.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	39.0	94.0	68.0	42.5	97.5	67.0
Merged-chr5-64288398-2	chr5	64287898	64288898	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 11 of 18)	intron (NM_001289514, intron 11 of 18)	58041.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	1.5	2.0	0.5	0.0	3.5	2.0
Merged-chr15-98483584-2	chr15	98483084	98484084	+	719.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010679)	promoter-TSS (NM_010679)	-901.0	NM_010679	16770.0	Mm.5074	NM_010679	ENSMUSG00000022991	Lalba	AW208827|Lyzg	lactalbumin, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102750133-2	chr12	102749633	102750633	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142939, intron 1 of 1)	intron (NM_001142939, intron 1 of 1)	6373.0	NM_177140	320351.0	Mm.86546	NM_177140	ENSMUSG00000046675	Tmem251	D230037D09Rik	transmembrane protein 251	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50170806-2	chr17	50170306	50171306	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 1 of 9)	intron (NM_181397, intron 1 of 9)	19691.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5739832-2	chr17	5739332	5740332	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 8 of 8)	intron (NM_146073, intron 8 of 8)	-58825.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45789806-2	chr4	45789306	45790306	+	719.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9216.0	NM_028270	72535.0	Mm.331583	NM_028270	ENSMUSG00000035561	Aldh1b1	2700007F14Rik	aldehyde dehydrogenase 1 family, member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61110780-2	chr18	61110280	61111280	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 4 of 21)	intron (NM_001037859, intron 4 of 21)	5208.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-80157741-2	chr5	80157241	80158241	+	719.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-862830.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45590024-2	chr9	45589486	45590486	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-158754.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	0.0	13.5	2.0	0.0	12.0	0.0
Merged-chr5-105562200-2	chr5	105561700	105562700	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	B1F|SINE|Alu	42729.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76518968-2	chr15	76518468	76519468	+	719.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_130893, exon 2 of 2)	exon (NM_130893, exon 2 of 2)	3161.0	NM_130893	170729.0	Mm.218747	NM_130893	ENSMUSG00000048385	Scrt1	-	scratch family zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-24039592-4	chr18	24039096	24040096	+	719.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18783.0	NM_021559	59057.0	Mm.417427	NM_021559	ENSMUSG00000051469	Zfp24	3526401F17Rik|5033419P20Rik|AI480505|AI642085|AL024422|KOX17|ZF-12|Zfp191|Znf24	zinc finger protein 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27317033-2	chr2	27316533	27317533	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 3 of 29)	intron (NR_133905, intron 3 of 29)	-69730.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99076248-2	chr10	99075748	99076748	+	719.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30834.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90933709-2	chr16	90933209	90934209	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026502, intron 1 of 6)	MTD|LTR|ERVL-MaLR	1140.0	NM_026502	68001.0	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100910349-2	chr7	100909849	100910849	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081116, intron 1 of 20)	intron (NM_001081116, intron 1 of 20)	21812.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr2-38932006-3	chr2	38931525	38932525	+	719.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172854)	promoter-TSS (NM_172854)	45.0	NM_172854	241327.0	Mm.103491	NM_172854	ENSMUSG00000046618	Olfml2a	4932431K08Rik|mFLJ00237	olfactomedin-like 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152615779-3	chr2	152615302	152616302	+	719.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	7251.0	NM_001039122	654459.0	Mm.358531	NM_001039122	ENSMUSG00000074678	Defb25	BD-25|mBD-25	defensin beta 25	protein-coding	1.5	4.0	4.5	1.5	6.0	3.0
Merged-chr18-35889260-3	chr18	35888741	35889741	+	719.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	34554.0	NM_001357459	67393.0	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8716569-2	chr19	8716069	8717069	+	719.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161413, intron 1 of 9)	ID_B1|SINE|B4	-2672.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61929031-4	chr8	61928535	61929535	+	719.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293783, intron 1 of 37)	intron (NM_001293783, intron 1 of 37)	948.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55929894-2	chr19	55929394	55930394	+	719.375	f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 15 of 15)	intron (NR_138565, intron 15 of 15)	34573.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-123185049-4	chr6	123184551	123185551	+	719.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004159, intron 3 of 5)	Lx8|LINE|L1	12028.0	NM_001004159	381809.0	Mm.333372	NM_001004159	ENSMUSG00000067767	Clec4b2	Aplra1|F830043G12Rik|mDCAR1	C-type lectin domain family 4, member b2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86799039-4	chr12	86798505	86799505	+	719.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64636.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115543525-2	chr5	115543056	115544056	+	719.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	-15911.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	7.5	16.5	21.0	26.0	16.0	10.5
Merged-chr1-191643124-4	chr1	191642628	191643628	+	719.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67492.0	NM_001306204	77065.0	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	2.0	8.5	2.0	6.5	8.5	0.5
Merged-chr13-60667620-2	chr13	60667120	60668120	+	719.357178	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	65409.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94993014-2	chr11	94992518	94993518	+	719.333374	f0_balb.idr|f0_c57.idr	intron (NM_172261, intron 1 of 9)	intron (NM_172261, intron 1 of 9)	1806.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49449634-2	chr13	49449134	49450134	+	719.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_075085, intron 11 of 13)	intron (NR_075085, intron 11 of 13)	28020.0	NM_001276399	75678.0	Mm.390586	NM_199056	ENSMUSG00000021385	Ippk	1810043M15Rik|InsP6	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107338449-2	chr11	107337949	107338949	+	719.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	132271.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97622689-2	chr11	97622275	97623275	+	719.333374	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045496, exon 4 of 4)	non-coding (NR_045496, exon 4 of 4)	6941.0	NM_175332	103551.0	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	4.0	1.5	1.5	0.0	0.0	2.0
Merged-chr6-54699189-3	chr6	54698683	54699683	+	719.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001289740, exon 3 of 3)	3' UTR (NM_001289740, exon 3 of 3)	17559.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	5.5	6.0	2.5	0.0	0.0	2.5
Merged-chr14-69795552-3	chr14	69795049	69796049	+	719.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153514, intron 6 of 9)	intron (NM_153514, intron 6 of 9)	9996.0	NM_153514	246710.0	Mm.102367	NM_153514	ENSMUSG00000022075	Rhobtb2	Dbc2|E130206H14Rik|mKIAA0717	Rho-related BTB domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28693755-3	chr17	28693252	28694252	+	719.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	1184.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-8992898-3	chr8	8992359	8993359	+	719.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	139429.0	NR_045854	71249.0	Mm.158635	NR_045854	ENSMUSG00000108848	4933430N04Rik	-	RIKEN cDNA 4933430N04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37244617-2	chr9	37244117	37245117	+	719.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145960, intron 1 of 18)	L2|LINE|L2	11121.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3663606-4	chr11	3663095	3664095	+	719.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159288, intron 4 of 26)	MERVL_2A-int|LTR|ERVL	4895.0	NM_198162	74522.0	Mm.139127	NM_198162	ENSMUSG00000034543	Morc2a	8430403M08Rik|Zcwcc1	microrchidia 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70014041-2	chr9	70013541	70014541	+	719.233337	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282083, intron 1 of 4)	intron (NM_001282083, intron 1 of 4)	1493.0	NR_104093	235459.0	Mm.293117	NM_199151	ENSMUSG00000033543	Gtf2a2	TFIIA-gamma|TfIIg|Tfiia2	general transcription factor II A, 2	protein-coding	12.0	21.5	20.0	26.5	19.0	10.0
Merged-chr4-83288798-3	chr4	83288276	83289276	+	719.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 2 of 19)	ORR1D2|LTR|ERVL-MaLR	35413.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0.0	2.5	0.0	0.0	1.5	2.0
Merged-chr10-118098825-2	chr10	118098294	118099294	+	719.200012	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	-42993.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	76.0	223.0	143.0	101.5	300.5	150.5
Merged-chr11-77404186-3	chr11	77403673	77404673	+	719.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 4 of 14)	intron (NM_177710, intron 4 of 14)	55893.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23565413-2	chr13	23564913	23565913	+	719.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-3048.0	NM_178205	319151.0	Mm.261658	NM_178205	ENSMUSG00000069273	Hist1h3e	H3-f|H3.1	histone cluster 1, H3e	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-62880949-2	chr17	62880449	62881449	+	719.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010109, intron 1 of 3)	CpG	368.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122468195-2	chr3	122467695	122468695	+	719.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013867, intron 3 of 11)	B3A|SINE|B2	-15374.0	NM_001355264	29815.0	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99629860-2	chr12	99629360	99630360	+	719.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL-int|LTR|ERVL	-1886.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-116657049-2	chr8	116656549	116657549	+	719.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 1 of 6)	B4A|SINE|B4	75942.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127638341-2	chr10	127637841	127638841	+	719.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-4645.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124425839-3	chr6	124425354	124426354	+	719.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9999.0	NM_001360570	19305.0	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1-BP|PTS1R|PXR1P|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62186675-2	chr10	62186175	62187175	+	719.099976	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_197996, exon 8 of 8)	3' UTR (NM_197996, exon 8 of 8)	7552.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-62879711-3	chr14	62879217	62880217	+	719.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	14175.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	13.0	19.0	18.5	18.0	38.5	26.5
Merged-chr5-113627795-2	chr5	113627295	113628295	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	15808.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111909895-2	chr12	111909395	111910395	+	719.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1840.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45055252-2	chr9	45054752	45055752	+	719.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001093749)	promoter-TSS (NM_001093749)	71.0	NM_001093749	319742.0	Mm.49611	NM_176993	ENSMUSG00000070305	Mpzl3	5430427F17Rik|A530065I17Rik|rc|ruf	myelin protein zero-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117182562-3	chr5	117182097	117183097	+	719.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	L1MB7|LINE|L1	49009.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153747714-2	chr1	153747214	153748214	+	719.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-1712.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80143298-2	chr11	80142798	80143798	+	719.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-1145.0	NM_183275	68550.0	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	7.5	5.5	10.5	2.0	4.0	5.5
Merged-chr9-124441899-2	chr9	124441399	124442399	+	719.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	18112.0	NR_015516	75135.0	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-88968721-1	chr11	88968221	88969221	+	719.0	f1_c57bl6.idr	Intergenic	RMER16B2|LTR|ERVK	-1790.0	NM_001360780	217066.0	Mm.347543	NM_001025564	ENSMUSG00000057534	Elobl	Gm15698|Tceb2l	elongin B-like	protein-coding	4.5	12.0	4.5	1.5	1.5	0.5
Merged-chr2-32402903-2	chr2	32402403	32403403	+	719.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133783)	TTS (NM_133783)	7013.0	NM_133783	96979.0	Mm.28048	NM_133783	ENSMUSG00000026820	Ptges2	0610038H10Rik|C79137|Gbf1|Mpges2|Pges2	prostaglandin E synthase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-24684715-1	chr6	24684215	24685215	+	719.0	f0_balb.idr	Intergenic	Intergenic	-19720.0	NM_028459	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-100531326-2	chr9	100530826	100531826	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010878, intron 1 of 3)	HAL1|LINE|L1	14808.0	NM_010878	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-15936016-2	chr5	15935516	15936516	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110843, intron 1 of 38)	intron (NM_001110843, intron 1 of 38)	1325.0	NM_001110844	12293.0	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33895398-2	chr16	33894899	33895899	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 5 of 14)	B1_Mus1|SINE|Alu	65734.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5631133-2	chr17	5630633	5631633	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	138533.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98921987-2	chr10	98921487	98922487	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	6835.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110769587-2	chr5	110769087	110770087	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029337, intron 1 of 51)	B1F|SINE|Alu	1130.0	NM_029337	75560.0	Mm.270487	NM_029337	ENSMUSG00000029505	Ep400	1700020J09Rik|AU023439|mDomino|mKIAA1498|p400	E1A binding protein p400	protein-coding	2.5	14.0	19.0	7.0	7.5	14.5
Merged-chr6-90663091-2	chr6	90662591	90663591	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134384, intron 13 of 13)	intron (NM_001134384, intron 13 of 13)	43845.0	NM_001037493	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-75126272-2	chr1	75125772	75126772	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194333, intron 11 of 11)	intron (NM_194333, intron 11 of 11)	7618.0	NM_194333	22626.0	Mm.68157	NM_194333	ENSMUSG00000026205	Slc23a3	SVCT3|Yspl1	solute carrier family 23 (nucleobase transporters), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-81888162-2	chr16	81887662	81888662	+	719.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	687465.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90270160-2	chr3	90269660	90270660	+	719.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105979)	promoter-TSS (NR_105979)	11.0	NR_105979	102465612.0		NR_105979	ENSMUSG00000099199	Mir7012	Gm27370|mmu-mir-7012	microRNA 7012	ncRNA	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr5-14173815-2	chr5	14173315	14174315	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011348, intron 4 of 16)	intron (NM_011348, intron 4 of 16)	148539.0	NM_011348	20349.0	Mm.134093	NM_011348	ENSMUSG00000063531	Sema3e	6430702L12|AA408817|Semah|mKIAA0331	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104061461-1	chr9	104060961	104061961	+	719.0	f0_balb.idr	intron (NM_025692, intron 1 of 11)	intron (NM_025692, intron 1 of 11)	1660.0	NM_025692	66663.0	Mm.224935	NM_025692	ENSMUSG00000032557	Uba5	5730525G14Rik|AW240750|Ube1dc1	ubiquitin-like modifier activating enzyme 5	protein-coding	6.0	0.0	0.0	1.5	0.0	1.0
Merged-chr11-120584249-2	chr11	120583775	120584775	+	719.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2655.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	2.5	3.0	0.0	0.0	9.0	0.5
Merged-chr17-35753563-1	chr17	35753063	35754063	+	719.0	f1_balb.idr	Intergenic	B3|SINE|B2	-18887.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	10.5	42.5	17.0	14.5	4.0	11.5
Merged-chr10-14208441-1	chr10	14207941	14208941	+	719.0	f1_c57bl6.idr	Intergenic	Intergenic	242062.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.0	1.5	4.0	0.0	0.0	0.0
Merged-chr16-57448749-2	chr16	57448249	57449249	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	Lx8b|LINE|L1	95472.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-98284556-2	chr2	98284056	98285056	+	719.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	816899.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	2.0	0.5	0.5	2.0	4.0	0.0
Merged-chr1-63112440-2	chr1	63111940	63112940	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114609, intron 1 of 11)	intron (NM_001114609, intron 1 of 11)	1827.0	NM_001081436	227195.0	Mm.74718	NM_001081436	ENSMUSG00000040865	Ino80d	7330405I11|A430093A21Rik|BC010584	INO80 complex subunit D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50613110-3	chr16	50612621	50613621	+	719.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040566, intron 3 of 4)	intron (NR_040566, intron 3 of 4)	-21967.0	NM_027046	69339.0	Mm.422869	NM_027046	ENSMUSG00000050685	Ccdc54	1700007N18Rik|AI644412|BB013989|NYD-SP17	coiled-coil domain containing 54	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27603309-1	chr7	27602809	27603809	+	719.0	f1_c57bl6.idr	intron (NM_001331108, intron 1 of 13)	intron (NM_001331108, intron 1 of 13)	-2488.0	NM_007434	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	12.0	17.5	21.5	6.5	5.5	4.5
Merged-chr19-5711415-2	chr19	5710910	5711910	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114595, intron 11 of 17)	intron (NM_001114595, intron 11 of 17)	6939.0	NM_010609	16530.0	Mm.440033	NM_010609	ENSMUSG00000024936	Kcnk7	2310014G03Rik|Kcnk6|Kcnk8|Knot|Mlk3	potassium channel, subfamily K, member 7	protein-coding	32.5	42.5	50.5	26.5	24.5	10.0
Merged-chr10-95299837-2	chr10	95299337	95300337	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	23872.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153216409-2	chr2	153215909	153216909	+	719.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9032.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	0.5	4.5	4.0	0.5	4.5	4.5
Merged-chr9-110333965-2	chr9	110333465	110334465	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001144, intron 1 of 22)	intron (NM_001001144, intron 1 of 22)	609.0	NM_001001144	235623.0	Mm.288741	NM_001001144	ENSMUSG00000032485	Scap	9530044G19|mKIAA0199	SREBF chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128737473-2	chr7	128736973	128737973	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145955, intron 1 of 15)	intron (NM_145955, intron 1 of 15)	2956.0	NM_145955	210711.0	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24455853-1	chr17	24455353	24456353	+	719.0	f1_c57bl6.idr	promoter-TSS (NM_007893)	promoter-TSS (NM_007893)	-461.0	NR_125990	13560.0	Mm.163132	NM_007893	ENSMUSG00000024137	E4f1	p120E4F|phi-AP3	E4F transcription factor 1	protein-coding	52.5	234.0	78.5	47.5	88.5	47.5
Merged-chr3-65109215-2	chr3	65108715	65109715	+	719.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010597, exon 1 of 14)	5' UTR (NM_010597, exon 1 of 14)	201.0	NM_010597	16497.0	Mm.316402	NM_010597	ENSMUSG00000027827	Kcnab1	Akr8a8|Kvbeta1.1|mKv(beta)1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46882133-1	chr8	46881633	46882633	+	719.0	f0_balb.idr	Intergenic	Intergenic	-104754.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118180059-2	chr14	118179559	118180559	+	719.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42932.0	NM_021434	58245.0	Mm.275411	NM_021434	ENSMUSG00000022131	Gpr180	AB041545|E130016I23Rik|Itr	G protein-coupled receptor 180	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166442535-2	chr2	166442035	166443035	+	719.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-4916.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91704971-2	chr6	91704471	91705471	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	20904.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7213400-2	chr10	7212900	7213900	+	719.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1163.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	2.0	32.5	22.5	8.5	14.5	23.0
Merged-chr16-86145847-1	chr16	86145347	86146347	+	719.0	f1_balb.idr	Intergenic	Lx5|LINE|L1	-244722.0	NM_011782	23794.0	Mm.112933	NM_011782	ENSMUSG00000022894	Adamts5	9530092O11Rik|ADAM-TS5|ADAMTS1|ADAMTS11|ADMP-2|AI481094|ASMP-2	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr17-10703564-2	chr17	10703045	10704045	+	719.0	f0_balb.idr|f1_balb.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	136646.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	2.0	2.0	4.5	12.0	7.5	25.0
Merged-chr7-45399786-2	chr7	45399286	45400286	+	719.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	-4044.0	NR_126538	20637.0	Mm.216386	NM_009224	ENSMUSG00000063511	Snrnp70	2700022N21Rik|3200002N22Rik|AI325098|R74807|Rnu1p70|Rnulp70|Snrp70|Srnp70|U1-70|U1-70K	small nuclear ribonucleoprotein 70 (U1)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59661587-2	chr9	59661087	59662087	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253883, intron 1 of 10)	intron (NM_001253883, intron 1 of 10)	5219.0	NM_011099	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98676710-2	chr15	98676210	98677210	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172612, intron 1 of 4)	intron (NM_172612, intron 1 of 4)	751.0	NM_172612	223881.0	Mm.274010	NM_172612	ENSMUSG00000054855	Rnd1	A830014L09Rik|Arhs	Rho family GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50532337-2	chr16	50531837	50532837	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040379, intron 1 of 5)	B2_Mm2|SINE|B2	3835.0	NR_040379	619312.0	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91909510-2	chr16	91909010	91910010	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 38 of 38)	intron (NM_010587, intron 38 of 38)	22120.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105059826-2	chr5	105059326	105060326	+	719.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6265.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-90710683-1	chr6	90710183	90711183	+	719.0	f0_balb.idr	intron (NM_001356440, intron 1 of 13)	intron (NM_001356440, intron 1 of 13)	5846.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-57064684-2	chr19	57064184	57065184	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001103177, intron 10 of 21)	intron (NM_001103177, intron 10 of 21)	54340.0	NM_001347459	226251.0	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr10-8893638-1	chr10	8893138	8894138	+	719.0	f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-7568.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.5	0.0	9.5	19.5	4.5	12.0
Merged-chr10-70173463-3	chr10	70172944	70173944	+	719.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111121, intron 5 of 8)	intron (NM_001111121, intron 5 of 8)	-31220.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-103821719-2	chr5	103821219	103822219	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133919, intron 7 of 19)	intron (NM_133919, intron 7 of 19)	67146.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-106838068-2	chr4	106837568	106838568	+	719.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33061.0	NM_001347159	329910.0	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-68415801-1	chr15	68415301	68416301	+	719.0	f1_c57bl6.idr	Intergenic	Intergenic	-74512.0	NR_029718	387228.0		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	5.0	4.0	2.0	6.5	7.0	0.0
Merged-chr14-25470840-1	chr14	25470340	25471340	+	719.0	f0_balb.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	11655.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	11.0	7.5	14.0	12.0	16.0	5.0
Merged-chr17-24658286-4	chr17	24657781	24658781	+	718.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001099664, exon 1 of 2)	exon (NM_001099664, exon 1 of 2)	144.0	NM_001099664	381073.0	Mm.291772	NM_001099664	ENSMUSG00000071230	Npw	Gm935	neuropeptide W	protein-coding	0.0	7.0	3.5	0.0	8.0	3.0
Merged-chr6-125403799-3	chr6	125403356	125404356	+	718.9523929999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23352.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	4.5	1.0	8.0	2.0	7.0	6.5
Merged-chr8-22873388-3	chr8	22872907	22873907	+	718.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081149, intron 3 of 17)	intron (NM_001081149, intron 3 of 17)	13868.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74692432-2	chr15	74691932	74692932	+	718.916687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-16729.0	NR_033197	66769.0	Mm.482908	NM_025756	ENSMUSG00000044276	4933427E11Rik	-	RIKEN cDNA 4933427E11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141294872-3	chr7	141294374	141295374	+	718.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007878, exon 4 of 4)	3' UTR (NM_007878, exon 4 of 4)	2868.0	NM_007878	13491.0	Mm.41075	NM_007878	ENSMUSG00000025496	Drd4	AW125663|D4R|Drd-4	dopamine receptor D4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38962906-3	chr18	38962405	38963405	+	718.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033789, intron 4 of 4)	intron (NM_001033789, intron 4 of 4)	-30240.0	NM_001361073	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	1.0	7.5	2.5	2.5	3.0	2.0
Merged-chr6-128788694-2	chr6	128788194	128789194	+	718.916626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008527)	promoter-TSS (NM_008527)	-53.0	NM_008527	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	2.0	0.0	3.0	0.0	0.0	0.0
Merged-chr9-95571144-3	chr9	95570631	95571631	+	718.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	11314.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-101618141-3	chr3	101617676	101618676	+	718.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-13469.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.0	8.0	1.5	1.5	14.0	5.0
Merged-chr1-10009161-4	chr1	10008652	10009652	+	718.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110971)	promoter-TSS (NR_110971)	-16.0	NM_145692	69312.0	Mm.386795	NM_027033	ENSMUSG00000025916	Ppp1r42	1700011J18Rik|4930418G15Rik|Lrrc67|TLRR	protein phosphatase 1, regulatory subunit 42	protein-coding	0.0	11.0	0.5	0.0	0.0	1.0
Merged-chr7-19337585-2	chr7	19337085	19338085	+	718.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7486.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19717667-2	chr7	19717167	19718167	+	718.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_008990, exon 9 of 9)	exon (NM_008990, exon 9 of 9)	-2238.0	NM_016871	53333.0	Mm.61682	NM_016871	ENSMUSG00000002984	Tomm40	AW539759|Mom35|Tom40	translocase of outer mitochondrial membrane 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120559896-2	chr8	120559396	120560396	+	718.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 2 of 15)	intron (NM_001145896, intron 2 of 15)	21200.0	NR_106159	102466849.0		NR_106159	ENSMUSG00000098280	Mir7687	Gm27573|mmu-mir-7687	microRNA 7687	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116009438-2	chr11	116008938	116009938	+	718.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_016905, intron 5 of 7)	intron (NM_016905, intron 5 of 7)	3281.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56160638-2	chr17	56160138	56161138	+	718.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA8|LINE|L1	-1853.0	NM_025566	66443.0	Mm.2312	NM_025566	ENSMUSG00000044469	Tnfaip8l1	2600017J23Rik|TIPE1	tumor necrosis factor, alpha-induced protein 8-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-54500746-2	chr1	54500246	54501246	+	718.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163314, intron 19 of 26)	RLTR45|LTR|ERVK	56938.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63043708-3	chr9	63043131	63044131	+	718.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62752.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117346046-3	chr8	117345540	117346540	+	718.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-3130.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-26436454-3	chr14	26435975	26436975	+	718.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 16 of 22)	B2_Mm2|SINE|B2	78928.0	NR_038005	71106.0	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-16994650-2	chr10	16994150	16995150	+	718.833313	f1_balb.idr|f1_c57bl6.idr	intron (NR_038020, intron 1 of 8)	intron (NR_038020, intron 1 of 8)	101132.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	2.0	7.5	6.0	3.5	7.0	4.0
Merged-chr6-116181014-3	chr6	116180518	116181518	+	718.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 1 of 5)	RLTR34D_MM|LTR|ERVK	12356.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-107228030-3	chr1	107227540	107228540	+	718.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	50331.0	NM_201363	381286.0	Mm.337362	NM_201363	ENSMUSG00000073601	Serpinb3c	1110001H02Rik|1110013A16Rik|Scca2|Serpinb4	serine (or cysteine) peptidase inhibitor, clade B, member 3C	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr13-17780126-4	chr13	17779612	17780612	+	718.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027118, intron 1 of 13)	ORR1E|LTR|ERVL-MaLR	24985.0	NM_001081058	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	2.0	0.0	0.5	2.0	0.0	0.0
Merged-chr7-44985039-2	chr7	44984539	44985539	+	718.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_045521, intron 1 of 11)	intron (NR_045521, intron 1 of 11)	1381.0	NM_001252476	15469.0	Mm.27545	NM_019830	ENSMUSG00000109324	Prmt1	6720434D09Rik|AW214366|Hrmt1l2|Mrmt1	protein arginine N-methyltransferase 1	protein-coding	0.0	6.5	7.5	2.0	1.0	3.5
Merged-chr8-104106662-2	chr8	104106162	104107162	+	718.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131138)	promoter-TSS (NR_131138)	-789.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106173562-2	chr1	106173079	106174079	+	718.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	1710.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-60969272-2	chr8	60968772	60969772	+	718.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_007711, intron 1 of 11)	intron (NM_007711, intron 1 of 11)	14039.0	NM_173873	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5687872-2	chr19	5687372	5688372	+	718.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_144868, intron 1 of 34)	intron (NM_144868, intron 1 of 34)	1036.0	NM_144868	104401.0	Mm.329650	NM_144868	ENSMUSG00000054874	Pcnx3	Pcnxl3|mKIAA4073	pecanex homolog 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128703045-2	chr2	128702545	128703545	+	718.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	MTD|LTR|ERVL-MaLR	4130.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78305181-3	chr10	78304647	78305647	+	718.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053014, intron 2 of 9)	intron (NM_053014, intron 2 of 9)	35060.0	NR_106119	102465765.0		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32911502-4	chr19	32911021	32912021	+	718.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	153944.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	20.0	37.5	30.5	19.5	17.5	15.0
Merged-chr10-7846144-3	chr10	7845657	7846657	+	718.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172785, intron 2 of 5)	intron (NM_172785, intron 2 of 5)	9776.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	12.5	25.0	21.0	5.0	27.0	22.0
Merged-chr4-62404910-3	chr4	62404384	62405384	+	718.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139291, intron 1 of 3)	RMER1B|Other|Other	3739.0	NM_139291	66440.0	Mm.109930	NM_139291	ENSMUSG00000066149	Cdc26	2010012C09Rik	cell division cycle 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55488196-3	chr13	55487665	55488665	+	718.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019813)	promoter-TSS (NM_019813)	-89.0	NM_001177372	56320.0	Mm.19016	NM_019813	ENSMUSG00000034675	Dbn1	-	drebrin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68247383-3	chr10	68246889	68247889	+	718.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	31337.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	5.5	46.0	15.0	25.5	44.0	20.0
Merged-chr1-138995427-2	chr1	138994927	138995927	+	718.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	17770.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-36153330-3	chr12	36152814	36153814	+	718.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025840, intron 1 of 11)	intron (NM_025840, intron 1 of 11)	3511.0	NM_025840	66912.0	Mm.288669	NM_025840	ENSMUSG00000020547	Bzw2	1110001I24Rik|Bdm2|HSPC028	basic leucine zipper and W2 domains 2	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr19-21319792-3	chr19	21319285	21320285	+	718.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A1-int|LTR|ERVL-MaLR	47507.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43722232-3	chr5	43721746	43722746	+	718.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359906, intron 26 of 37)	intron (NM_001359906, intron 26 of 37)	59867.0	NM_001359903	231214.0	Mm.44434	NM_172274	ENSMUSG00000039765	Cc2d2a	5730509K17Rik|b2b1035Clo	coiled-coil and C2 domain containing 2A	protein-coding	8.0	1.0	4.0	4.0	7.0	12.0
Merged-chr17-4778351-3	chr17	4777845	4778845	+	718.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143365.0	NR_130984	75117.0	Mm.429393	NR_130984		4930517M08Rik	-	RIKEN cDNA 4930517M08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6716759-3	chr2	6716207	6717207	+	718.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	4955.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-8423511-3	chr5	8422998	8423998	+	718.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190717)	promoter-TSS (NM_001190717)	660.0	NM_178766	319653.0	Mm.146262	NM_178766	ENSMUSG00000054099	Slc25a40	B230315F11Rik	solute carrier family 25, member 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94336340-2	chr10	94335871	94336871	+	718.666626	f0_balb.idr|f1_balb.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	24422.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	4.5	45.0	16.0	3.0	9.5	13.5
Merged-chr2-160280064-2	chr2	160279564	160280564	+	718.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47430.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-123149093-4	chr7	123148595	123149595	+	718.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144925, intron 3 of 23)	intron (NM_144925, intron 3 of 23)	25210.0	NM_144925	233833.0	Mm.102305	NM_144925	ENSMUSG00000052707	Tnrc6a	2010321I05Rik|3110054G10Rik|AW557223|CAGH26|D130023A07Rik|GW182|Tnrc6	trinucleotide repeat containing 6a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78754351-2	chr11	78753851	78754851	+	718.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2622.0	NM_197989	69109.0	Mm.341420	NM_197989	ENSMUSG00000049489	Fam58b	1810009O10Rik|Ccnq|Fam58a	family with sequence similarity 58, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-99280111-2	chr11	99279611	99280611	+	718.583374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029393)	TTS (NM_029393)	5127.0	NM_029393	75706.0	Mm.46378	NM_029393	ENSMUSG00000020913	Krt24	2310058N18Rik|2310075C18Rik	keratin 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141762383-3	chr4	141761899	141762899	+	718.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172338, exon 15 of 15)	3' UTR (NM_172338, exon 15 of 15)	15724.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	5.5	10.5	14.0	20.5	52.0	32.5
Merged-chr18-44400611-3	chr18	44400116	44401116	+	718.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027490, intron 4 of 10)	B3|SINE|B2	20116.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	1.0	2.5	0.0	2.5	0.5	0.0
Merged-chr5-122903514-3	chr5	122903021	122904021	+	718.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003953, intron 12 of 22)	intron (NM_001003953, intron 12 of 22)	-3171.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	12.0	0.0	3.0	2.0	3.0	0.0
Merged-chr5-8051620-3	chr5	8051125	8052125	+	718.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025618, intron 1 of 7)	ID2|SINE|ID	-4917.0	NM_001080974	109552.0	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47430366-2	chr19	47429866	47430866	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	34045.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr7-139246206-2	chr7	139245704	139246704	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2278.0	NM_001033206	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	2.5	1.0	13.5	7.5	22.5	4.0
Merged-chr7-133125088-2	chr7	133124588	133125588	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1605.0	NM_009980	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103762377-2	chr2	103761877	103762877	+	718.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001111290)	TTS (NM_001111290)	-1107.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79460941-2	chr11	79460440	79461440	+	718.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_010897, intron 30 of 57)	intron (NM_010897, intron 30 of 57)	23091.0	NR_045305	104522.0	Mm.436987	NR_045305	ENSMUSG00000091523	AU040972	AU040954	expressed sequence AU040972	ncRNA	1.5	11.0	14.5	9.0	7.5	4.5
Merged-chr9-32518626-2	chr9	32518126	32519126	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	22826.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96182393-2	chr10	96181893	96182893	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	-43814.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-16893158-2	chr12	16892671	16893671	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	UCON29|DNA|PiggyBac?	-1807.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	67.0	110.5	84.5	37.0	108.0	75.5
Merged-chr5-9088138-2	chr5	9087638	9088638	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12599.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44398229-2	chr9	44397729	44398729	+	718.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008063)	promoter-TSS (NM_008063)	53.0	NM_008063	14385.0	Mm.30087	NM_008063	ENSMUSG00000032114	Slc37a4	100043178|G6PT|G6pt1|GSD-1b|mG6PT	solute carrier family 37 (glucose-6-phosphate transporter), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-17850801-2	chr5	17850301	17851301	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	RMER1A|Other|Other	-1009.0	NM_001159556	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62066728-2	chr18	62066228	62067228	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	113253.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0.0	0.0	3.5	1.0	6.5	0.0
Merged-chr2-59307030-2	chr2	59306530	59307530	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 6 of 20)	intron (NM_175464, intron 6 of 20)	79652.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19311732-2	chr7	19311232	19312232	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1687.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88719442-2	chr5	88718942	88719942	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1429.0	NM_026735	68473.0	Mm.35764	NM_026735	ENSMUSG00000006262	Mob1b	1110003E08Rik|AU015450|B230364F10|Mobkl1a	MOB kinase activator 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-31320075-2	chr18	31319575	31320575	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2947.0	NM_009065	19762.0	Mm.5163	NM_009065	ENSMUSG00000057455	Rit2	RIBA|Rin|Roc2	Ras-like without CAAX 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4457383-2	chr2	4456883	4457883	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	56407.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-53943774-2	chr5	53943274	53944274	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54749.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16283564-2	chr7	16283064	16284064	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172297, intron 2 of 10)	intron (NM_172297, intron 2 of 10)	1095.0	NM_172297	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135005677-2	chr5	135005177	135006177	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-3475.0	NM_001190437	68758.0	Mm.389700	NM_145215	ENSMUSG00000040532	Abhd11	1110054D16Rik|A630008N09Rik|Wbscr21	abhydrolase domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88402632-2	chr3	88402132	88403132	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025928, intron 1 of 4)	intron (NM_025928, intron 1 of 4)	7765.0	NM_001310605	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-143152785-2	chr6	143152285	143153285	+	718.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153819, exon 2 of 9)	non-coding (NR_153819, exon 2 of 9)	1146.0	NR_153819	102633311.0	Mm.333484	NR_153819		Gm31108	Gm31169	predicted gene, 31108	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149303073-2	chr4	149302573	149303573	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008441, intron 1 of 20)	intron (NM_008441, intron 1 of 20)	4625.0	NM_207682	16561.0	Mm.402393	NM_008441	ENSMUSG00000063077	Kif1b	A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204	kinesin family member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97401845-2	chr6	97401345	97402345	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	57441.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31188421-2	chr5	31187921	31188921	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127356, intron 10 of 11)	B2_Mm2|SINE|B2	4718.0	NM_001127355	13667.0	Mm.29394	NM_010122	ENSMUSG00000029145	Eif2b4	Eif2b	eukaryotic translation initiation factor 2B, subunit 4 delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-90226312-2	chr11	90225812	90226812	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-23164.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101851086-2	chr5	101850586	101851586	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 60 of 66)	intron (NM_172882, intron 60 of 66)	85956.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	2.5	0.0	1.0	0.0	5.5	0.0
Merged-chr16-91845715-2	chr16	91845215	91846215	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 19 of 28)	ORR1G|LTR|ERVL-MaLR	85915.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30946833-2	chr14	30946333	30947333	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3544.0	NM_001306078	16424.0	Mm.3227	NM_008406	ENSMUSG00000006529	Itih1	ITI-HC1|Intin1|Itih-1	inter-alpha trypsin inhibitor, heavy chain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29736191-2	chr2	29735691	29736691	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 21 of 23)	intron (NM_054050, intron 21 of 23)	-25337.0	NM_001177392	433416.0	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	-	predicted gene 13547	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128073179-2	chr2	128072678	128073678	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028765, intron 14 of 17)	intron (NM_028765, intron 14 of 17)	-52860.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	2.0	7.5	4.0	2.5	3.0	0.5
Merged-chr8-26694571-2	chr8	26694071	26695071	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	129852.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	36.5	32.0	26.5	8.5	15.5	9.5
Merged-chr15-73652739-2	chr15	73652239	73653239	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-27995.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-183992125-2	chr1	183991625	183992625	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	41873.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	1.5	0.0	3.0	4.5	0.0	3.0
Merged-chr7-100536467-2	chr7	100535967	100536967	+	718.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183270)	promoter-TSS (NM_183270)	-633.0	NM_183270	68185.0	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	13.0	52.5	36.0	34.0	57.5	39.5
Merged-chr7-19887338-2	chr7	19886838	19887838	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177036, intron 1 of 6)	B1F|SINE|Alu	627.0	NM_177036	319930.0	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112665947-2	chr13	112665447	112666447	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178746, intron 1 of 14)	URR1A|DNA|hAT-Charlie	5181.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	28.0	18.0	20.0	5.0	33.0	17.0
Merged-chr5-110771787-2	chr5	110771287	110772287	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152254, intron 1 of 1)	ID_B1|SINE|B4	838.0	NR_152254	100504049.0	Mm.474515	NR_152254	ENSMUSG00000086401	Gm15559	-	predicted gene 15559	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18220165-2	chr16	18219665	18220665	+	718.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172151)	TTS (NM_172151)	-6302.0	NR_015575	66779.0	Mm.387525	NR_015575		4933432I09Rik	-	RIKEN cDNA 4933432I09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116109842-2	chr9	116109386	116110386	+	718.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009371, exon 5 of 8)	exon (NM_009371, exon 5 of 8)	65477.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.5	10.5	8.5	10.0	11.5	8.5
Merged-chr10-128082523-2	chr10	128082023	128083023	+	718.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016774)	promoter-TSS (NM_016774)	-784.0	NM_016774	11947.0	Mm.238973	NM_016774	ENSMUSG00000025393	Atp5b	Atp5f1b	ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	protein-coding	4.0	20.0	20.0	4.5	19.5	18.0
Merged-chr7-97977614-3	chr7	97977105	97978105	+	718.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177696, intron 10 of 17)	intron (NM_177696, intron 10 of 17)	57647.0	NM_177696	233537.0	Mm.375772	NM_177696	ENSMUSG00000035582	Gdpd4	4921513O04	glycerophosphodiester phosphodiesterase domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr4-136159803-2	chr4	136159303	136160303	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12471.0	NM_177733	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0.0	0.0	2.5	2.5	0.0	11.0
Merged-chr19-6577391-2	chr19	6576891	6577891	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34321.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8897253-2	chr19	8896753	8897753	+	718.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008060)	promoter-TSS (NM_008060)	-804.0	NM_001293621	14376.0	Mm.3196	NM_008060	ENSMUSG00000071650	Ganab	AU042638|G2an|GluII|mKIAA0088	alpha glucosidase 2 alpha neutral subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128622900-2	chr4	128622400	128623400	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-4281.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34842465-2	chr18	34841965	34842965	+	718.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001204914, exon 2 of 8)	exon (NM_001204914, exon 2 of 8)	1876.0	NM_144865	225362.0	Mm.293588	NM_144865	ENSMUSG00000038555	Reep2	-	receptor accessory protein 2	protein-coding	0.5	1.0	0.0	0.0	0.0	3.5
Merged-chr7-98887536-2	chr7	98887036	98888036	+	718.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178635, exon 15 of 15)	3' UTR (NM_178635, exon 15 of 15)	48691.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	9.0	0.0	0.0	0.0	0.0	0.5
Merged-chr7-126448578-2	chr7	126448085	126449085	+	718.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_007504, exon 15 of 23)	exon (NM_007504, exon 15 of 23)	14488.0	NM_007504	11937.0	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90574991-2	chr3	90574491	90575491	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9668.0	NM_001355597	20197.0	Mm.440044	NM_011310	ENSMUSG00000001021	S100a3	S100E	S100 calcium binding protein A3	protein-coding	4.5	5.0	7.0	9.5	13.5	4.0
Merged-chr6-83691274-2	chr6	83690774	83691774	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13417.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19026826-2	chr7	19026326	19027326	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360713, intron 1 of 22)	(T)n|Simple_repeat|Simple_repeat	2449.0	NM_026605	68188.0	Mm.130902	NM_026605	ENSMUSG00000023118	Sympk	1500016F02Rik|4632415H16Rik|AA125406|AI449890|SPK|SYM	symplekin	protein-coding	0.0	0.0	1.5	5.0	4.5	2.0
Merged-chr9-106426991-2	chr9	106426475	106427475	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2436.0	NM_001324533	19944.0	Mm.288696	NM_009082	ENSMUSG00000048758	Rpl29	Rpl43	ribosomal protein L29	protein-coding	4.0	1.5	0.0	0.0	2.5	1.5
Merged-chr19-19990769-2	chr19	19990269	19991269	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	399902.0	NM_010730	16952.0	Mm.248360	NM_010730	ENSMUSG00000024659	Anxa1	Anx-1|Anx-A1|C430014K04Rik|Lpc-1|Lpc1	annexin A1	protein-coding	0.0	0.0	2.5	0.0	0.0	0.0
Merged-chr4-99184802-2	chr4	99184312	99185312	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30|LTR|ERV1	-9122.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	15.0	49.5	30.0	15.5	54.5	24.5
Merged-chr12-40659846-2	chr12	40659346	40660346	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 8 of 52)	intron (NM_172803, intron 8 of 52)	213793.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25864725-2	chr17	25864130	25865130	+	718.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026633, exon 3 of 5)	exon (NM_026633, exon 3 of 5)	-3115.0	NM_001163766	106618.0	Mm.35470	NM_134124	ENSMUSG00000073434	Wdr90	3230401M21Rik|AI551153|mKIAA1924	WD repeat domain 90	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr7-25782592-6	chr7	25781988	25782988	+	718.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 4 of 19)	RLTR20A4|LTR|ERVK	6245.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55505880-2	chr1	55505380	55506380	+	718.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	Lx8|LINE|L1	99934.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	96.5	161.0	112.0	97.0	162.5	117.0
Merged-chr1-192763086-3	chr1	192762624	192763624	+	718.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 1 of 11)	MTE2b|LTR|ERVL-MaLR	8095.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	0.0	8.0	5.0	0.0	0.0	1.0
Merged-chr1-43224384-3	chr1	43223878	43224878	+	718.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27617.0	NM_001289533	14200.0	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-126531560-2	chr10	126531060	126532060	+	718.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	178831.0	NR_105841	102465224.0		NR_105841	ENSMUSG00000098756	Mir378d	Gm27650|mmu-mir-378d	microRNA 378d	ncRNA	0.5	0.0	1.0	0.5	0.0	1.0
Merged-chr1-120535059-2	chr1	120534559	120535559	+	718.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30035.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	2.0	7.0	0.0	0.0	0.0	0.0
Merged-chr18-89597281-3	chr18	89596773	89597773	+	718.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039173, intron 2 of 7)	Lx2|LINE|L1	171863.0	NM_001039173	623279.0	Mm.447164	NM_001039173	ENSMUSG00000073514	Dok6	Dok-6	docking protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5793045-3	chr2	5792563	5793563	+	718.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51971.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	10.5	12.0	19.5	4.0	5.0	23.5
Merged-chr14-55091674-3	chr14	55091155	55092155	+	718.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039198, intron 1 of 9)	CpG	393.0	NM_001039198	239102.0	Mm.441113	NM_001039198	ENSMUSG00000040721	Zfhx2	ZFH-5	zinc finger homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118707761-3	chr9	118707361	118708361	+	718.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 15 of 27)	intron (NM_133721, intron 15 of 27)	-3831.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.0	10.5	5.5	3.5	9.0	4.0
Merged-chr10-44005434-3	chr10	44004949	44005949	+	718.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172393)	promoter-TSS (NM_172393)	-603.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35563299-3	chr18	35562785	35563785	+	718.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010771, intron 1 of 14)	intron (NM_010771, intron 1 of 14)	1127.0	NM_010771	17184.0	Mm.215034	NM_010771	ENSMUSG00000037236	Matr3	1110061A14Rik|2810017I02Rik|AI841759|AW555618|D030046F20Rik|mKIAA0723	matrin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43643271-2	chr4	43642771	43643771	+	718.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355466, intron 8 of 20)	intron (NM_001355466, intron 8 of 20)	10323.0	NM_001290462	433700.0	Mm.331569	NM_001007463	ENSMUSG00000066196	Spag8	MH-SPAG8|SMP-1	sperm associated antigen 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72327701-2	chr8	72327243	72328243	+	718.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	8681.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	2.5	0.0	4.0	1.0	0.0	3.0
Merged-chr3-108147570-2	chr3	108147070	108148070	+	718.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001305461)	TTS (NM_001305461)	-1418.0	NM_010306	14679.0	Mm.271703	NM_010306	ENSMUSG00000000001	Gnai3	AI158965|AW537698|Galphai3|Gnai-3	guanine nucleotide binding protein (G protein), alpha inhibiting 3	protein-coding	0.0	1.0	1.5	0.0	1.0	1.5
Merged-chr17-5742348-2	chr17	5741848	5742848	+	718.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 8 of 8)	intron (NM_146073, intron 8 of 8)	-56309.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-96630638-2	chr7	96630132	96631132	+	718.25	f0_balb.idr|f1_balb.idr	intron (NM_011858, intron 5 of 32)	RLTR45|LTR|ERVK	170917.0	NR_045874	791381.0	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	-	predicted gene 15413	ncRNA	13.0	5.5	1.5	5.5	14.0	13.5
Merged-chr14-52446123-2	chr14	52445647	52446647	+	718.25	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-4246.0	NM_020514	57271.0	Mm.88824	NM_020514	ENSMUSG00000035626	Olfr1509	MOR244-3|Mor83|Or83	olfactory receptor 1509	protein-coding	1.0	8.5	2.5	5.0	23.0	19.0
Merged-chr19-46644402-2	chr19	46643911	46644911	+	718.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001177812, exon 3 of 5)	exon (NM_001177812, exon 3 of 5)	21010.0	NM_001177813	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	5.0	11.0	4.0	0.0	2.0	7.5
Merged-chr8-82914677-3	chr8	82914179	82915179	+	718.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 1 of 6)	ORR1E|LTR|ERVL-MaLR	51323.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	1.0	5.5	5.0	10.0	15.0	15.5
Merged-chr2-93642814-4	chr2	93642340	93643340	+	718.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007442, exon 1 of 4)	exon (NM_007442, exon 1 of 4)	406.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-28236874-4	chr3	28236393	28237393	+	718.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26321.0	NM_001163007	665113.0	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84687569-2	chr18	84687069	84688069	+	718.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-1867.0	NM_023149	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41328135-2	chr19	41327635	41328635	+	718.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_031376, exon 5 of 17)	exon (NM_031376, exon 5 of 17)	56935.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	3.0	3.5	0.5	0.0	0.5	0.0
Merged-chr11-118450390-2	chr11	118449890	118450890	+	718.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001204129, exon 4 of 4)	3' UTR (NM_001204129, exon 4 of 4)	4605.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108767052-2	chr12	108766552	108767552	+	718.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26259.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120534915-2	chr5	120534415	120535415	+	718.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133221)	TTS (NM_133221)	23723.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3280583-2	chr8	3280083	3281083	+	718.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010568)	promoter-TSS (NM_010568)	-966.0	NM_001330056	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0.5	0.0	1.0	0.5	0.0	1.0
Merged-chr1-45861303-2	chr1	45860803	45861803	+	718.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64291.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81604135-2	chr10	81603635	81604635	+	718.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2173.0	NR_030677	268319.0	Mm.131825	NM_001033363	ENSMUSG00000074862	BC025920	-	zinc finger protein pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84440098-3	chr3	84439605	84440605	+	718.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	39386.0	NM_001205355	229474.0	Mm.331107	NM_001033301	ENSMUSG00000041842	Fhdc1	6330505N24Rik|Gm126	FH2 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76605401-3	chr11	76604913	76605913	+	718.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-27674.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	6.0	28.0	32.0	10.0	21.5	27.0
Merged-chr11-119493328-2	chr11	119492915	119493915	+	718.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164636, intron 2 of 8)	B1_Mus2|SINE|Alu	1795.0	NM_177394	338371.0	Mm.271946	NM_177394	ENSMUSG00000039850	Endov	A730011L01Rik	endonuclease V	protein-coding	2.5	0.5	4.5	4.0	0.5	6.5
Merged-chr17-49424862-2	chr17	49424362	49425362	+	718.083313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-3502.0	NM_028464	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-71379191-3	chr7	71378713	71379713	+	718.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-530482.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45742055-3	chr7	45741514	45742514	+	718.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360784, intron 1 of 5)	polypyrimidine|Low_complexity|Low_complexity	464.0	NM_001360784	54200.0	Mm.271634	NM_017465	ENSMUSG00000003271	Sult2b1	AI326997|BB173635|ST2B1|SULT2B	sulfotransferase family, cytosolic, 2B, member 1	protein-coding	26.0	46.5	17.0	2.0	1.5	1.0
Merged-chr1-189867164-3	chr1	189866654	189867654	+	718.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008976, intron 18 of 18)	intron (NM_008976, intron 18 of 18)	55137.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	0.0	3.5	3.0	5.5	7.0	6.0
Merged-chr15-7264021-1	chr15	7263521	7264521	+	718.0	f0_balb.idr	intron (NM_001289496, intron 6 of 22)	intron (NM_001289496, intron 6 of 22)	123479.0	NM_013584	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28696288-2	chr17	28695788	28696788	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	3720.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45020091-2	chr19	45019591	45020591	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130526, intron 1 of 4)	intron (NM_001130526, intron 1 of 4)	1956.0	NM_001130526	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	5.0	4.0	2.0	7.5	4.5	2.0
Merged-chr3-90612819-3	chr3	90612329	90613329	+	718.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011313)	promoter-TSS (NM_011313)	-65.0	NM_011313	20200.0	Mm.100144	NM_011313	ENSMUSG00000001025	S100a6	2A9|5B10|CALCYCLIN|Cacy|PRA	S100 calcium binding protein A6 (calcyclin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128620780-2	chr2	128620280	128621280	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008569, intron 43 of 47)	intron (NM_008569, intron 43 of 47)	28439.0	NM_001310641	241634.0	Mm.297682	NM_001310641	ENSMUSG00000074812	Spdye4c	Gm355|SpeedyB3|SpyB3	speedy/RINGO cell cycle regulator family, member E4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-40926655-2	chr8	40926148	40927148	+	718.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_026840, intron 1 of 5)	intron (NM_026840, intron 1 of 5)	415.0	NM_026840	68797.0	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	8.5	13.5	13.5	0.5	0.0	4.0
Merged-chr19-59055865-2	chr19	59055381	59056381	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 2 of 16)	L1_Mus3|LINE|L1	20188.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51914049-3	chr3	51913537	51914537	+	718.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	190969.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121595344-2	chr5	121594844	121595844	+	718.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1520.0	NM_001308450	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	5.0	32.0	8.5	0.0	7.0	7.0
Merged-chr18-32709065-2	chr18	32708565	32709565	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045381, intron 4 of 4)	intron (NR_045381, intron 4 of 4)	-106318.0	NM_021367	53603.0	Mm.143716	NM_021367	ENSMUSG00000024379	Tslp	-	thymic stromal lymphopoietin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108576958-3	chr8	108576467	108577467	+	718.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_077224, intron 1 of 1)	intron (NR_077224, intron 1 of 1)	7710.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	4.0	0.5	3.0	4.0	0.0	0.0
Merged-chr8-95302536-1	chr8	95302036	95303036	+	718.0	f1_balb.idr	intron (NM_145601, intron 2 of 12)	B3A|SINE|B2	4049.0	NM_145601	333329.0	Mm.484049	NM_145601	ENSMUSG00000031789	Cngb1	Cngb1b|Garp2|Gm1959	cyclic nucleotide gated channel beta 1	protein-coding	7.0	20.0	3.0	4.0	2.5	0.5
Merged-chr5-121375094-1	chr5	121374594	121375594	+	718.0	f1_c57bl6.idr	exon (NM_001163470, exon 8 of 12)	exon (NM_001163470, exon 8 of 12)	10315.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	0.0	0.0	3.0	0.0	12.0	0.0
Merged-chr18-85566432-1	chr18	85565932	85566932	+	718.0	f1_balb.idr	Intergenic	(CATA)n|Simple_repeat|Simple_repeat	-614908.0	NM_025969	67105.0	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	translocase of inner mitochondrial membrane 21	protein-coding	0.0	5.0	1.5	0.0	2.5	1.5
Merged-chr1-64970907-1	chr1	64970407	64971407	+	718.0	f0_balb.idr	Intergenic	Intergenic	-14083.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82259699-2	chr15	82259199	82260199	+	718.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037697, exon 2 of 2)	non-coding (NR_037697, exon 2 of 2)	3676.0	NR_037698	76505.0	Mm.23023	NR_037697	ENSMUSG00000068099	1500009C09Rik	-	RIKEN cDNA 1500009C09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79144357-3	chr12	79143874	79144874	+	718.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009705, intron 2 of 7)	intron (NM_009705, intron 2 of 7)	13586.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	1.0	1.5	0.0	9.5	4.0	11.5
Merged-chr6-88828748-2	chr6	88828248	88829248	+	718.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011844)	TTS (NM_011844)	13187.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122270171-2	chr3	122269671	122270671	+	718.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-4243.0	NM_153806	99480.0	Mm.398647	NM_153806	ENSMUSG00000039756	Dnttip2	4930588M11Rik|AA408582|AU014960|HSU15552	deoxynucleotidyltransferase, terminal, interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10318020-4	chr19	10317510	10318510	+	718.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13133.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65113507-2	chr17	65113007	65114007	+	718.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-277436.0	NM_030031	78057.0	Mm.109380	NM_030031	ENSMUSG00000024088	4930583I09Rik	-	RIKEN cDNA 4930583I09 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-93334736-2	chr6	93334236	93335236	+	718.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	394154.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38348046-2	chr16	38347546	38348546	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001017429, intron 1 of 2)	intron (NM_001017429, intron 1 of 2)	1047.0	NM_001017429	12856.0	Mm.27396	NM_001017429	ENSMUSG00000046516	Cox17	AI037035	cytochrome c oxidase assembly protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-48608807-1	chr3	48608307	48609307	+	718.0	f1_c57bl6.idr	non-coding (NR_003617, exon 1 of 1)	non-coding (NR_003617, exon 1 of 1)	293.0	NR_003617	66332.0	Mm.46124	NM_025493		1700018B24Rik	-	enhancer of rudimentary homolog pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-113770830-2	chr9	113770330	113771330	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114347, intron 4 of 39)	intron (NM_001114347, intron 4 of 39)	-22500.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-89363503-1	chr4	89363003	89364003	+	718.0	f0_balb.idr	intron (NR_132431, intron 2 of 9)	intron (NR_132431, intron 2 of 9)	-52471.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85544835-1	chr1	85544335	85545335	+	718.0	f1_balb.idr	Intergenic	Intergenic	53975.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83665842-1	chr8	83665342	83666342	+	718.0	f1_balb.idr	promoter-TSS (NM_013641)	promoter-TSS (NM_013641)	-802.0	NM_013641	19216.0	Mm.213000	NM_013641	ENSMUSG00000019464	Ptger1	EP1|Ptgerep1	prostaglandin E receptor 1 (subtype EP1)	protein-coding	0.5	8.5	0.5	1.5	7.5	1.0
Merged-chr5-19532909-2	chr5	19532409	19533409	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 1 of 22)	Lx2|LINE|L1	305863.0	NM_001170746	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-97084245-1	chr5	97083745	97084745	+	718.0	f1_balb.idr	intron (NM_198422, intron 6 of 6)	intron (NM_198422, intron 6 of 6)	27351.0	NM_001359910	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	0.0	2.0	1.5	2.0	4.5	0.0
Merged-chr8-36028724-2	chr8	36028246	36029246	+	718.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66082.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	0.0	1.0	0.5	0.0	4.5	0.0
Merged-chr10-18960066-2	chr10	18959566	18960566	+	718.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51897.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123456868-2	chr5	123456368	123457368	+	718.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133917, exon 17 of 17)	3' UTR (NM_133917, exon 17 of 17)	25233.0	NM_029594	76399.0	Mm.75049	NM_029594	ENSMUSG00000029437	Il31	1700013B14Rik	interleukin 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88114350-2	chr17	88113850	88114850	+	718.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-11162.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165661379-1	chr1	165660879	165661879	+	718.0	f0_balb.idr	intron (NM_001038846, intron 2 of 5)	intron (NM_001038846, intron 2 of 5)	-26838.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115159329-1	chr5	115158829	115159829	+	718.0	f1_balb.idr	Intergenic	B3|SINE|B2	-1153.0	NM_175403	109154.0	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	50.5	80.0	61.0	24.5	78.5	57.5
Merged-chr11-119270837-1	chr11	119270337	119271337	+	718.0	f1_c57bl6.idr	intron (NM_008064, intron 2 of 19)	intron (NM_008064, intron 2 of 19)	2874.0	NM_008064	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	2.0	3.5	2.5	14.0	9.0	6.5
Merged-chr16-57212944-2	chr16	57212444	57213444	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 3 of 17)	intron (NM_026254, intron 3 of 17)	-11473.0	NM_001358434	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118196876-2	chr11	118196376	118197376	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	15866.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-16576721-2	chr16	16576221	16577221	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	RMER30|DNA|hAT-Charlie	-16502.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46508563-2	chr19	46508063	46509063	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	6915.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-53397344-2	chr9	53396844	53397844	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_212445, intron 6 of 7)	B3A|SINE|B2	3542.0	NR_105807	102466640.0		NR_105807	ENSMUSG00000098362	Mir130c	Gm27641|mmu-mir-130c	microRNA 130c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52979241-2	chr2	52978741	52979741	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	121373.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6532244-2	chr19	6531744	6532744	+	718.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001205235, exon 22 of 22)	3' UTR (NM_001205235, exon 22 of 22)	10826.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83428220-2	chr6	83427720	83428720	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347313, intron 3 of 11)	intron (NM_001347313, intron 3 of 11)	13458.0	NM_183138	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	1.5	14.5	2.5	1.5	6.5	2.0
Merged-chr3-66970993-2	chr3	66970493	66971493	+	718.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001302358)	TTS (NM_001302358)	7818.0	NM_001302358	20429.0	Mm.39093	NM_013665	ENSMUSG00000027833	Shox2	6330543G17Rik|OG12|Og12x|Prx3|SHOT	short stature homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-70921939-2	chr6	70921439	70922439	+	718.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3017.0	NM_001355766	74221.0	Mm.273326	NM_028825	ENSMUSG00000051896	Tex37	1700011F03Rik|Tsc21	testis expressed 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126601076-1	chr8	126600576	126601576	+	718.0	f1_balb.idr	Intergenic	Intergenic	-7640.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	14.5	9.5	0.0	1.0	0.0	0.0
Merged-chr9-78437360-2	chr9	78436860	78437860	+	718.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_173386, exon 2 of 5)	exon (NM_173386, exon 2 of 5)	5877.0	NR_125721	214763.0	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	2.0	1.5	0.5	2.0	1.5	0.5
Merged-chr13-3359842-1	chr13	3359342	3360342	+	718.0	f1_balb.idr	Intergenic	CpG	-118461.0	NR_015522	76937.0	Mm.487240	NR_015522	ENSMUSG00000097709	2810429I04Rik	AI256682	RIKEN cDNA 2810429I04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-110601041-2	chr13	110600541	110601541	+	718.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	205997.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	24.0	14.5	6.0	9.0	17.0	10.0
Merged-chr16-11128266-2	chr16	11127766	11128766	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029582, intron 2 of 11)	intron (NM_029582, intron 2 of 11)	6266.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-53326325-2	chr5	53325825	53326825	+	718.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59219.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45971079-1	chr4	45970579	45971579	+	718.0	f1_balb.idr	intron (NM_001290475, intron 1 of 16)	intron (NM_001290475, intron 1 of 16)	-1218.0	NM_146142	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	0.0	3.5	1.5	0.0	0.0	0.0
Merged-chr2-166587872-2	chr2	166587372	166588372	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 21 of 39)	intron (NM_177782, intron 21 of 39)	23350.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80208560-2	chr11	80208060	80209060	+	718.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021536)	promoter-TSS (NM_021536)	-495.0	NM_001163354	59040.0	Mm.489674	NM_021536	ENSMUSG00000017686	Rhot1	2210403N23Rik|AA415293|AF244542|AI834919|Arht1|C430039G08Rik|Miro1	ras homolog family member T1	protein-coding	6.5	35.0	14.0	0.5	20.5	17.0
Merged-chr2-8803429-2	chr2	8802929	8803929	+	718.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-386086.0	NR_038180	73438.0	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47225685-2	chr19	47225185	47226185	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021360, intron 1 of 5)	PB1D10|SINE|Alu	-3158.0	NM_001163480	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	7.5	25.0	1.0	4.0	5.5	6.0
Merged-chr2-119741761-2	chr2	119741218	119742218	+	718.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146125)	promoter-TSS (NM_146125)	-619.0	NM_146125	228550.0	Mm.65337	NM_146125	ENSMUSG00000027296	Itpka	-	inositol 1,4,5-trisphosphate 3-kinase A	protein-coding	5.5	64.5	33.5	28.5	52.0	39.0
Merged-chr16-32200683-3	chr16	32200133	32201133	+	718.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20833.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27677207-3	chr3	27676693	27677693	+	718.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173182, intron 1 of 25)	intron (NM_173182, intron 1 of 25)	33259.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21180145-2	chr9	21179645	21180645	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183408, intron 1 of 14)	intron (NM_183408, intron 1 of 14)	-3956.0	NM_001310750	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128663462-2	chr4	128662962	128663962	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	B3|SINE|B2	8760.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	4.0	5.0	2.5	4.0	5.0	1.0
Merged-chr2-151749665-2	chr2	151749165	151750165	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_138569, intron 2 of 2)	intron (NR_138569, intron 2 of 2)	1800.0	NR_138568	75283.0	Mm.195735	NM_029235		4930556L07Rik	1700020P01Rik|4930593I08Rik	RIKEN cDNA 4930556L07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85942071-2	chr11	85941571	85942571	+	718.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45306.0	NM_172798	21387.0	Mm.275336	NM_011536	ENSMUSG00000000094	Tbx4	3930401C23	T-box 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25633133-3	chr15	25632634	25633634	+	717.977783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 1 of 40)	ID_B1|SINE|B4	10584.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-46916185-2	chr14	46915701	46916701	+	717.966675	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	33236.0	NM_001037221	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	43.0	88.5	85.5	53.5	49.5	68.5
Merged-chr3-108886277-4	chr3	108885752	108886752	+	717.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165965, intron 2 of 11)	intron (NM_001165965, intron 2 of 11)	3756.0	NM_177091	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	0.5	2.0	1.0	0.0	9.5	0.5
Merged-chr2-151632276-5	chr2	151631796	151632796	+	717.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291076, intron 1 of 5)	CpG-8656	297.0	NM_198214	241727.0	Mm.39312	NM_198214	ENSMUSG00000027457	Snph	6430515A01|AW045671|AW556958|AW743098|mKIAA0374	syntaphilin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112774773-2	chr12	112774273	112775273	+	717.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14118.0	NM_178911	104759.0	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54264753-3	chr11	54264249	54265249	+	717.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010556)	TTS (NM_010556)	2530.0	NM_010556	16187.0	Mm.983	NM_010556	ENSMUSG00000018914	Il3	BPA|Csfmu|HCGF|Il-3|MCGF|PSF	interleukin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119430518-4	chr9	119430017	119431017	+	717.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007397, intron 6 of 9)	intron (NM_007397, intron 6 of 9)	-14443.0	NR_153320	208194.0	Mm.101578	NM_172456	ENSMUSG00000042787	Exog	AW557704|ENGL-B|ENGL-a|Endogl1|Endogl2|Engl|Engla|Englb	endo/exonuclease (5'-3'), endonuclease G-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-100455251-3	chr9	100454708	100455708	+	717.8555299999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31265.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	21.5	22.5	22.5	36.0	113.5	87.0
Merged-chr1-151596850-2	chr1	151596350	151597350	+	717.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	25477.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125727957-2	chr8	125727457	125728457	+	717.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-6246.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57030850-3	chr17	57030331	57031331	+	717.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010613, intron 1 of 17)	intron (NM_010613, intron 1 of 17)	676.0	NM_010613	16549.0	Mm.34296	NM_010613	ENSMUSG00000007670	Khsrp	6330409F21Rik|Fbp2|Fubp2|Ksrp	KH-type splicing regulatory protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35999527-3	chr17	35999024	36000024	+	717.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015618, intron 1 of 1)	intron (NR_015618, intron 1 of 1)	5020.0	NR_015618	77810.0	Mm.483143	NR_015618		A930015D03Rik	-	RIKEN cDNA A930015D03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3793336-3	chr4	3792819	3793819	+	717.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	42336.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	2.5	5.0	2.5	0.0	1.5	2.5
Merged-chr8-24431497-4	chr8	24431011	24432011	+	717.825012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7435.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47661853-1	chr9	47661353	47662353	+	717.799988	f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	131501.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	11.5	12.0	8.5	3.0	1.5	2.0
Merged-chr7-30324606-5	chr7	30324278	30325278	+	717.799988	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2403.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	3.0	2.0	3.5	7.0	1.5	3.0
Merged-chr5-139750700-4	chr5	139750213	139751213	+	717.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026748)	TTS (NM_026748)	-14380.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	0.0	7.0	9.5	0.0	2.5	3.5
Merged-chr17-31344403-3	chr17	31343875	31344875	+	717.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242427, intron 17 of 19)	intron (NM_001242427, intron 17 of 19)	-41859.0	NM_008804	18585.0	Mm.10812	NM_008804	ENSMUSG00000041119	Pde9a	PDE9A1	phosphodiesterase 9A	protein-coding	2.0	0.0	0.0	2.0	0.0	0.0
Merged-chr19-53393822-2	chr19	53393322	53394322	+	717.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3188.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9517412-2	chr18	9516947	9517947	+	717.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67293.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	1.0	0.0	4.0	0.0	0.0	4.0
Merged-chr2-30592991-2	chr2	30592491	30593491	+	717.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2053.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10636047-2	chr19	10635520	10636520	+	717.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_153778, intron 1 of 19)	intron (NR_153778, intron 1 of 19)	1787.0	NR_153778	71768.0	Mm.169261	NM_027913	ENSMUSG00000043789	Vwce	1300015B04Rik	von Willebrand factor C and EGF domains	protein-coding	0.0	3.0	1.0	1.0	0.0	2.5
Merged-chr11-98765746-2	chr11	98765246	98766246	+	717.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178060)	TTS (NM_178060)	9631.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-99062203-4	chr4	99061698	99062698	+	717.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026082, intron 11 of 47)	L1MB8|LINE|L1	31244.0	NM_013913	30924.0	Mm.28341	NM_013913	ENSMUSG00000028553	Angptl3	hypl	angiopoietin-like 3	protein-coding	27.5	69.0	34.0	32.0	61.5	19.5
Merged-chr3-142588243-3	chr3	142587800	142588800	+	717.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6547.0	NM_010259	14468.0	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11096008-3	chr19	11095506	11096506	+	717.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027058)	TTS (NM_027058)	-14903.0	NM_022430	64381.0	Mm.34460	NM_022430	ENSMUSG00000024730	Ms4a8a	2010004L09Rik|AI481240|CD20L5|Ms4a8	membrane-spanning 4-domains, subfamily A, member 8A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27969753-3	chr17	27969244	27970244	+	717.666687	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	60438.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	1.5	0.0	2.0	0.0	2.0	0.5
Merged-chr18-56620983-3	chr18	56620481	56621481	+	717.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32633.0	NM_026099	67343.0	Mm.87057	NM_026099	ENSMUSG00000032900	Tex43	1700065I17Rik|Tseg7	testis expressed 43	protein-coding	1.0	0.0	0.0	0.0	0.0	2.0
Merged-chr6-22122207-3	chr6	22121735	22122735	+	717.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081351, intron 8 of 21)	intron (NM_001081351, intron 8 of 21)	136325.0	NM_001081351	214642.0	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-88707747-2	chr9	88707247	88708247	+	717.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359992, intron 2 of 2)	L1M4a1|LINE|L1	11840.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127363138-3	chr2	127362680	127363680	+	717.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009633)	promoter-TSS (NM_009633)	-106.0	NM_009633	11552.0	Mm.347390	NM_009633	ENSMUSG00000058620	Adra2b	Adra-2b|[a]2B|a2b-AR|alpha2-C2|alpha2B	adrenergic receptor, alpha 2b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22229677-3	chr9	22229205	22230205	+	717.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028420, intron 1 of 4)	MERV1_LTR|LTR|ERV1	3993.0	NM_001164624	235047.0	Mm.290849	NM_172763	ENSMUSG00000057982	Zfp809	BB114266|C330026E23	zinc finger protein 809	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171358593-4	chr1	171358082	171359082	+	717.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001360824, exon 4 of 4)	3' UTR (NM_001360824, exon 4 of 4)	2216.0	NM_001033039	68874.0	Mm.10756	NM_001033039	ENSMUSG00000045259	Klhdc9	1190002J23Rik|AA087357|ESTM31	kelch domain containing 9	protein-coding	0.0	1.0	3.0	3.0	4.5	2.5
Merged-chr11-54859501-2	chr11	54859001	54860001	+	717.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_029327, intron 1 of 4)	B3|SINE|B2	1090.0	NM_029327	75530.0	Mm.83578	NM_029327	ENSMUSG00000020268	Lyrm7	1700024C24Rik|9330147L21Rik	LYR motif containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100080652-2	chr15	100080152	100081152	+	717.666687	f1_balb.idr|f1_c57bl6.idr	intron (NR_037311, intron 3 of 3)	intron (NR_037311, intron 3 of 3)	41988.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39100842-3	chr18	39100322	39101322	+	717.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 3 of 21)	intron (NM_001361073, intron 3 of 21)	107677.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-109554488-2	chr5	109553988	109554988	+	717.666687	f1_balb.idr|f1_c57bl6.idr	TTS (NM_016715)	TTS (NM_016715)	4505.0	NM_016715	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	0.0	1.5	1.0	0.0	4.0	0.5
Merged-chr7-126785212-2	chr7	126784712	126785712	+	717.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360464)	TTS (NM_001360464)	3729.0	NM_011538	21389.0	Mm.727	NM_011538	ENSMUSG00000030699	Tbx6	rv	T-box 6	protein-coding	1.5	0.0	2.0	1.5	1.0	2.5
Merged-chr3-145192209-2	chr3	145191709	145192709	+	717.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVL-B4-int|LTR|ERVL	73609.0	NM_025714	52184.0	Mm.259105	NM_025714	ENSMUSG00000028256	Odf2l	4733401D09Rik|9630045K08Rik|D3Ertd250e	outer dense fiber of sperm tails 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-108263530-2	chr11	108263030	108264030	+	717.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	80358.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-63864032-3	chr18	63863525	63864525	+	717.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014981, intron 20 of 27)	intron (NM_001014981, intron 20 of 27)	155330.0	NM_001014981	104082.0	Mm.30850	NM_001014981	ENSMUSG00000040560	Wdr7	AI462727|TRAG|mKIAA0541	WD repeat domain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54832011-5	chr18	54831479	54832479	+	717.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	158201.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-34672879-4	chr12	34672364	34673364	+	717.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-143975.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	18.5	24.5	17.0	17.5	27.0	11.0
Merged-chr1-86486880-3	chr1	86486343	86487343	+	717.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-39714.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13651052-3	chr8	13650467	13651467	+	717.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	MTC|LTR|ERVL-MaLR	26620.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	3.0	6.0	11.0	17.5	13.5	12.5
Merged-chr17-51294767-3	chr17	51294277	51295277	+	717.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037268, intron 3 of 4)	intron (NR_037268, intron 3 of 4)	16789.0	NR_037253	100526485.0		NR_037253	ENSMUSG00000105330	Mir669a-6	mmu-mir-669a-6	microRNA 669a-6	ncRNA	8.5	4.5	2.0	3.0	11.0	0.5
Merged-chr8-26960241-6	chr8	26959705	26960705	+	717.527771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17131.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136656730-3	chr1	136656258	136657258	+	717.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26638.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-42370147-2	chr6	42369647	42370647	+	717.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045169)	promoter-TSS (NR_045169)	-524.0	NR_045169	72131.0	Mm.105385	NR_045169	ENSMUSG00000101268	2010310C07Rik	-	RIKEN cDNA 2010310C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-27395390-2	chr16	27394890	27395890	+	717.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025615, intron 1 of 9)	intron (NM_001025615, intron 1 of 9)	6434.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-76410833-1	chr13	76410333	76411333	+	717.5	f0_balb.idr	intron (NM_030174, intron 1 of 20)	intron (NM_030174, intron 1 of 20)	25872.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	11.0	1.0	8.0	12.5	8.5	2.0
Merged-chr12-3815137-2	chr12	3814637	3815637	+	717.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	7977.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145616125-2	chr6	145615619	145616619	+	717.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009449, intron 1 of 4)	intron (NM_009449, intron 1 of 4)	156.0	NM_009449	22147.0	Mm.270295	NM_009449	ENSMUSG00000067338	Tuba3b	M[a]7|Tuba7	tubulin, alpha 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55657836-2	chr19	55657336	55658336	+	717.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	B4|SINE|B4	44368.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11603975-2	chr2	11603475	11604475	+	717.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152824)	promoter-TSS (NM_152824)	-776.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69584914-2	chr8	69584440	69585440	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	40235.0	NM_001045553	234362.0	Mm.458487	NM_172754	ENSMUSG00000060427	Zfp868	AI449175|AW108241|C530032E20|mszf62	zinc finger protein 868	protein-coding	2.0	1.0	1.0	0.5	0.0	1.0
Merged-chr5-122048675-2	chr5	122048175	122049175	+	717.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007804)	promoter-TSS (NM_007804)	-850.0	NM_007804	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	0.0	0.5	0.0	0.0	0.0	7.5
Merged-chr5-141055680-2	chr5	141055180	141056180	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55084.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-111312352-2	chr11	111311852	111312852	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	246188.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-89453145-2	chr1	89452645	89453645	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1666.0	NM_178119	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-16362106-2	chr15	16361597	16362597	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-416004.0	NM_009869	12565.0	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-107749448-2	chr7	107748948	107749948	+	717.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163557)	TTS (NM_001163557)	8584.0	NM_001205227	320635.0	Mm.132828	NM_177216	ENSMUSG00000048065	Cyb5r2	D630003K02Rik|b5R.2	cytochrome b5 reductase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25540644-2	chr14	25540144	25541144	+	717.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 3 of 23)	intron (NM_183208, intron 3 of 23)	6205.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28667746-2	chr7	28667246	28668246	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25103.0	NM_207238	233040.0	Mm.116116	NM_207238	ENSMUSG00000037463	Fbxo27	E130008B10Rik|FBG5|Gm161	F-box protein 27	protein-coding	0.0	0.0	0.0	0.0	5.5	0.0
Merged-chr12-76368356-2	chr12	76367856	76368856	+	717.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028356, intron 1 of 2)	intron (NM_028356, intron 1 of 2)	1108.0	NM_001172104	109929.0	Mm.41880	NM_028356	ENSMUSG00000056459	Zbtb25	2810462M08Rik|2900064P18Rik|AI842128|Kup|Zfp-50|Zfp50	zinc finger and BTB domain containing 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34036825-2	chr17	34036325	34037325	+	717.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011306, intron 7 of 9)	intron (NM_011306, intron 7 of 9)	-2313.0	NM_009926	12815.0	Mm.20230	NM_009926	ENSMUSG00000024330	Col11a2	-	collagen, type XI, alpha 2	protein-coding	0.0	0.0	2.5	0.0	0.0	1.5
Merged-chr19-20345895-2	chr19	20345395	20346395	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44776.0	NM_010730	16952.0	Mm.248360	NM_010730	ENSMUSG00000024659	Anxa1	Anx-1|Anx-A1|C430014K04Rik|Lpc-1|Lpc1	annexin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-127977202-2	chr1	127976702	127977702	+	717.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 12 of 20)	intron (NM_001285945, intron 12 of 20)	108429.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	2.5	2.5	0.0	0.0	3.5	0.0
Merged-chr5-21219808-2	chr5	21219308	21220308	+	717.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 6 of 26)	intron (NR_153365, intron 6 of 26)	33541.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-94431651-2	chr9	94431151	94432151	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106430.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	4.0	8.0	13.0	2.5	25.5	8.0
Merged-chr2-178413541-2	chr2	178413041	178414041	+	717.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081289)	promoter-TSS (NM_001081289)	922.0	NM_001085501	228966.0	Mm.472736	NM_001085501	ENSMUSG00000049999	Ppp1r3d	2610024M03Rik|Gm359	protein phosphatase 1, regulatory subunit 3D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-13610911-2	chr6	13610411	13611411	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	-2813.0	NM_028990	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11442106-2	chr8	11441606	11442606	+	717.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009932, intron 41 of 47)	intron (NM_009932, intron 41 of 47)	-35823.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63824298-2	chr4	63823798	63824798	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36986.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132575141-2	chr4	132574641	132575641	+	717.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081211, intron 1 of 1)	Charlie1a|DNA|hAT-Charlie	11074.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47649365-2	chr19	47648865	47649865	+	717.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001290825, exon 49 of 54)	exon (NM_001290825, exon 49 of 54)	42677.0	NM_007732	12821.0	Mm.1225	NM_007732	ENSMUSG00000025064	Col17a1	BP180|Bpag|Bpag2	collagen, type XVII, alpha 1	protein-coding	0.5	7.0	0.0	2.5	3.0	0.0
Merged-chr11-79256310-2	chr11	79255810	79256810	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1615.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38346085-2	chr16	38345585	38346585	+	717.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001017429)	promoter-TSS (NM_001017429)	-914.0	NM_001017429	12856.0	Mm.27396	NM_001017429	ENSMUSG00000046516	Cox17	AI037035	cytochrome c oxidase assembly protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-141013043-2	chr5	141012543	141013543	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12447.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28401762-2	chr17	28401262	28402262	+	717.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 10 of 10)	L1_Mus3|LINE|L1	-36546.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8761373-2	chr10	8760871	8761871	+	717.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	B1_Mus1|SINE|Alu	124699.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	57.0	176.5	93.0	55.5	100.5	84.0
Merged-chr11-8523892-2	chr11	8523392	8524392	+	717.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 13 of 30)	intron (NM_001083587, intron 13 of 30)	140643.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	5.0	0.0	1.5	5.0	0.0	1.5
Merged-chr5-101921031-2	chr5	101920531	101921531	+	717.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 21 of 66)	intron (NM_172882, intron 21 of 66)	148890.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131993966-2	chr2	131993466	131994466	+	717.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175445, exon 11 of 11)	3' UTR (NM_175445, exon 11 of 11)	36022.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165740636-2	chr1	165740136	165741136	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B1|LTR|ERVL	-23122.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-22346539-2	chr4	22346039	22347039	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-11004.0	NR_104379	269514.0	Mm.40708	NM_172988	ENSMUSG00000040410	Fbxl4	AI836810|FBL4|FBL5	F-box and leucine-rich repeat protein 4	protein-coding	0.0	13.5	2.0	0.0	0.5	0.5
Merged-chr18-30810319-2	chr18	30809819	30810819	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	506809.0	NM_009065	19762.0	Mm.5163	NM_009065	ENSMUSG00000057455	Rit2	RIBA|Rin|Roc2	Ras-like without CAAX 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106336144-2	chr8	106335644	106336644	+	717.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_126090)	TTS (NR_126090)	1844.0	NM_021491	58994.0	Mm.23298	NM_021491	ENSMUSG00000031906	Smpd3	4631433G07Rik|AI427456|AW537966|fro|nSMase2	sphingomyelin phosphodiesterase 3, neutral	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80397380-2	chr10	80396880	80397880	+	717.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001306143, intron 1 of 6)	ID_B1|SINE|B4	2151.0	NM_013595	17192.0	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26659006-2	chr17	26658506	26659506	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17390.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70949691-2	chr17	70949191	70950191	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	40825.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108640122-3	chr12	108639523	108640523	+	717.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	4270.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25278034-2	chr7	25277534	25278534	+	717.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302811, intron 2 of 20)	intron (NM_001302811, intron 2 of 20)	-4145.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-148213069-2	chr6	148212569	148213569	+	717.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286560)	promoter-TSS (NM_001286560)	-695.0	NM_001286560	67456.0	Mm.59812	NM_026168	ENSMUSG00000030304	Ergic2	1200009B18Rik|4930572C01Rik|AA408438|Ptx1	ERGIC and golgi 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-72945405-3	chr17	72944919	72945919	+	717.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	27114.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148044405-2	chr4	148043905	148044905	+	717.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_027809, intron 3 of 12)	intron (NR_027809, intron 3 of 12)	3216.0	NM_001161798	17769.0	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	methylenetetrahydrofolate reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-39062461-2	chr17	39061961	39062961	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14576.0	NM_001177582	100126779.0	Mm.471589	NM_001177582	ENSMUSG00000096697	Esp23	Gm20581	exocrine gland secreted peptide 23	protein-coding	0.5	2.5	0.0	0.5	0.5	0.0
Merged-chr19-4139668-2	chr19	4139168	4140168	+	717.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144532)	promoter-TSS (NM_144532)	-59.0	NM_144532	73660.0	Mm.379226	NM_144532	ENSMUSG00000024842	Cabp4	2410038D05Rik	calcium binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-10145232-2	chr8	10144732	10145732	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8679.0	NM_001319151	244281.0	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-84581324-2	chr16	84580839	84581839	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-98450.0	NR_040537	78023.0	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	3.0	2.0	0.5	0.0	1.0	0.5
Merged-chr19-5811301-5	chr19	5810895	5811895	+	717.450012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8723.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	2.0	0.0	2.0	2.5	0.0	2.0
Merged-chr4-132898429-3	chr4	132897910	132898910	+	717.450012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163792)	TTS (NM_001163792)	-13952.0	NM_133887	100226.0	Mm.28237	NM_133887	ENSMUSG00000028879	Stx12	AI850350|AU041521|Stx13	syntaxin 12	protein-coding	4.5	27.5	16.0	0.0	0.5	0.0
Merged-chr6-97360181-3	chr6	97359687	97360687	+	717.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	intron (NM_145148, intron 6 of 23)	99099.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97454625-3	chr6	97454093	97455093	+	717.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	4693.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	6.5	17.0	10.0	0.0	15.0	6.0
Merged-chr7-141100528-2	chr7	141100030	141101030	+	717.400024	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023059)	promoter-TSS (NM_023059)	16.0	NM_023059	24058.0	Mm.38017	NM_023059	ENSMUSG00000025494	Sigirr	AI256711|TIR8	single immunoglobulin and toll-interleukin 1 receptor (TIR) domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117578863-2	chr8	117578363	117579363	+	717.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 10 of 32)	B1F|SINE|Alu	80588.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107067426-3	chr3	107066928	107067928	+	717.388855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27924.0	NR_033498	229694.0	Mm.347584	NM_173787	ENSMUSG00000056145	AI504432	A230102G19	expressed sequence AI504432	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7009339-2	chr19	7008839	7009839	+	717.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362399, intron 6 of 14)	B2_Mm1t|SINE|B2	10130.0	NM_153795	108101.0	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33574796-2	chr16	33574296	33575296	+	717.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 4 of 11)	RLTR20A4|LTR|ERVK	56201.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102372070-2	chr12	102371570	102372570	+	717.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 6 of 9)	MTEa|LTR|ERVL-MaLR	67743.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136979913-3	chr5	136979413	136980413	+	717.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6991.0	NM_001310747	70103.0	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	2.0	2.0	3.5	3.0	5.0	1.5
Merged-chr15-77614165-1	chr15	77613665	77614665	+	717.333313	f1_balb.idr	Intergenic	RLTR14-int|LTR|ERV1	-18040.0	NM_177820	328561.0	Mm.379486	NM_177820	ENSMUSG00000050014	Apol10b	9130218O11Rik	apolipoprotein L 10B	protein-coding	0.0	8.5	3.5	0.0	0.0	0.0
Merged-chr9-48835971-3	chr9	48835508	48836508	+	717.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033324)	promoter-TSS (NM_001033324)	-63.0	NM_001033324	235320.0	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding	0.0	1.0	1.0	0.0	0.0	0.0
Merged-chr12-71342488-1	chr12	71341988	71342988	+	717.333313	f0_balb.idr	Intergenic	Intergenic	32604.0	NM_001190466	59036.0	Mm.46662	NM_021532	ENSMUSG00000044548	Dact1	4921528D17Rik|AI115603|DAPPER|DAPPER1|FRODO|Frd1|Frodo1|MDpr1|MTNG3|THYEX3	dishevelled-binding antagonist of beta-catenin 1	protein-coding	3.5	11.0	1.5	27.0	68.5	40.5
Merged-chr4-109207644-3	chr4	109207138	109208138	+	717.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5366.0	NM_001346502	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0.5	11.5	0.0	0.0	0.5	1.0
Merged-chr14-15201176-1	chr14	15200676	15201676	+	717.333313	f0_c57.idr	Intergenic	Intergenic	-236447.0	NR_152122	77981.0	Mm.138039	NM_001033183		B230110C06Rik	-	RIKEN cDNA B230110C06 gene	ncRNA	0.0	0.0	4.0	0.0	4.0	1.0
Merged-chr19-55927978-2	chr19	55927478	55928478	+	717.333313	f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 15 of 15)	intron (NR_138565, intron 15 of 15)	32657.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-32766462-4	chr15	32765945	32766945	+	717.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155440, intron 1 of 1)	intron (NR_155440, intron 1 of 1)	6707.0	NR_155440	105245909.0	Mm.229263	NR_155440	ENSMUSG00000115749	Gm41289	-	predicted gene, 41289	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134332113-2	chr1	134331613	134332613	+	717.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001144855, intron 1 of 28)	intron (NM_001144855, intron 1 of 28)	815.0	NM_001144855	68507.0	Mm.295105	NM_001144855	ENSMUSG00000026458	Ppfia4	100042382|1110008G13Rik|AI448359|AI852265|C81506|Gm3812	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118491636-2	chr11	118491136	118492136	+	717.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001039167, exon 15 of 15)	3' UTR (NM_001039167, exon 15 of 15)	14804.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113216097-3	chr12	113215583	113216583	+	717.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30180.0	NM_153776	69195.0	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	4.0	6.5	1.0	0.0	7.5	6.0
Merged-chr5-140847378-3	chr5	140846865	140847865	+	717.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16934.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63077323-4	chr14	63076815	63077815	+	717.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	22242.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9029905-2	chr13	9029405	9030405	+	717.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-33893.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103762497-4	chr14	103762003	103763003	+	717.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63071.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27776095-2	chr2	27775595	27776595	+	717.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65512.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27634807-2	chr17	27634307	27635307	+	717.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_025963, intron 1 of 5)	intron (NM_025963, intron 1 of 5)	435.0	NM_025963	67097.0	Mm.275810	NM_025963	ENSMUSG00000052146	Rps10	2210402A09Rik	ribosomal protein S10	protein-coding	7.0	10.5	20.5	3.5	31.5	18.5
Merged-chr3-87015760-3	chr3	87015275	87016275	+	717.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-16435.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	19.0	18.5	12.0	12.5	24.5	14.0
Merged-chr14-8162003-3	chr14	8161486	8162486	+	717.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360315, intron 18 of 18)	intron (NM_001360315, intron 18 of 18)	11006.0	NM_024221	68263.0	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153559459-4	chr1	153558980	153559980	+	717.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9766.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123305968-4	chr4	123305459	123306459	+	717.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17720.0	NM_022033	64059.0	Mm.270287	NM_022033	ENSMUSG00000076436	Oxct2a	Oxct|Oxct2|Scot|Scot-t1	3-oxoacid CoA transferase 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91945294-2	chr2	91944794	91945794	+	717.033325	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105965)	promoter-TSS (NR_105965)	-364.0	NR_105965	102465604.0		NR_105965	ENSMUSG00000098651	Mir6999	Gm27673|mmu-mir-6999	microRNA 6999	ncRNA	0.0	2.0	0.0	0.0	0.0	1.0
Merged-chr5-73180156-3	chr5	73179661	73180661	+	717.027771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028194, intron 3 of 62)	intron (NM_028194, intron 3 of 62)	76457.0	NM_028194	72313.0	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	1.5	7.5	4.0	3.5	7.0	3.0
Merged-chr5-148594885-4	chr5	148594391	148595391	+	717.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42103.0	NM_001359199	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	10.0	11.0	21.5	8.5	16.5	10.5
Merged-chr2-11740650-3	chr2	11740140	11741140	+	717.016663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	34928.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83210683-2	chr17	83210183	83211183	+	717.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4600.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80104417-2	chr10	80103917	80104917	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-1715.0	NM_001359637	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52338800-2	chr3	52338300	52339300	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019739, intron 1 of 2)	intron (NM_019739, intron 1 of 2)	70463.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130666523-1	chr2	130666023	130667023	+	717.0	f1_balb.idr	Intergenic	ID4_|SINE|ID	-1318.0	NM_025922	16434.0	Mm.21399	NM_025922	ENSMUSG00000074797	Itpa	2010016I08Rik|AU020102|ITPase|Itp|NTPase	inosine triphosphatase (nucleoside triphosphate pyrophosphatase)	protein-coding	0.0	1.0	0.0	2.5	2.5	0.0
Merged-chr6-122117349-2	chr6	122116849	122117849	+	717.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_2-I_MM-int|LTR|ERVK	-19279.0	NR_003624	381806.0	Mm.482418	NM_001013775	ENSMUSG00000071204	Gm10319	EG381806	murinoglobulin pseudogene	pseudo	0.5	0.0	3.5	0.0	0.0	3.5
Merged-chr11-61503862-2	chr11	61503362	61504362	+	717.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1282.0	NM_013717	27078.0	Mm.261226	NM_013717	ENSMUSG00000001039	B9d1	AW045994|B9|Eppb9	B9 protein domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-113812134-2	chr9	113811634	113812634	+	717.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286602)	promoter-TSS (NM_001286602)	-452.0	NM_001286601	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0.0	0.5	0.0	5.0	0.5	0.0
Merged-chr17-5725693-2	chr17	5725193	5726193	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 6 of 8)	intron (NM_146073, intron 6 of 8)	-72964.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45899012-2	chr7	45898512	45899512	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144801, intron 2 of 7)	intron (NM_144801, intron 2 of 7)	1943.0	NM_144801	70209.0	Mm.163766	NM_144801	ENSMUSG00000002781	Tmem143	2310076O21Rik|AI481604	transmembrane protein 143	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107600148-3	chr9	107599698	107600698	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042779, intron 16 of 19)	intron (NM_001042779, intron 16 of 19)	5204.0	NM_009153	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	5.0	5.0	0.5	0.0	0.0	5.0
Merged-chr4-128666021-2	chr4	128665521	128666521	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	11319.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-45941445-1	chr18	45940945	45941945	+	717.0	f1_balb.idr	intron (NR_040342, intron 2 of 3)	intron (NR_040342, intron 2 of 3)	103815.0	NR_040342	107003.0	Mm.395148	NR_040342		A330093E20Rik	AU043608	RIKEN cDNA A330093E20 gene	ncRNA	14.0	0.0	1.5	2.5	0.0	3.0
Merged-chr16-18427427-2	chr16	18426927	18427927	+	717.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007744)	promoter-TSS (NM_007744)	-711.0	NM_001111062	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47121480-1	chr6	47120980	47121980	+	717.0	f1_balb.idr	intron (NM_001004357, intron 20 of 23)	intron (NM_001004357, intron 20 of 23)	-122916.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.0	4.5	0.0	0.0	0.5	0.0
Merged-chr5-137518626-2	chr5	137518126	137519126	+	717.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031408)	promoter-TSS (NM_031408)	-254.0	NM_031408	57330.0	Mm.268344	NM_031408	ENSMUSG00000029714	Gigyf1	Perq1|mKIAA4110	GRB10 interacting GYF protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19216815-2	chr7	19216315	19217315	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175668, intron 1 of 1)	intron (NM_175668, intron 1 of 1)	4277.0	NM_175668	319197.0	Mm.135984	NM_175668	ENSMUSG00000044317	Gpr4	-	G protein-coupled receptor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-70414069-1	chr18	70413569	70414569	+	717.0	f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-58385.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	12.5	30.5	8.0	0.5	0.0	1.5
Merged-chr9-72957511-3	chr9	72957008	72958008	+	717.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1277.0	NM_026314	67685.0	Mm.31817	NM_026314	ENSMUSG00000092192	Dyx1c1	1700010I24Rik|Dnaaf4|EKN1|b2b811.1Clo|b2b811Clo	dyslexia susceptibility 1 candidate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-20006756-3	chr3	20006248	20007248	+	717.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001276248, exon 20 of 20)	3' UTR (NM_001276248, exon 20 of 20)	28562.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59336154-2	chr2	59335654	59336654	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 12 of 20)	RMER6A|LTR|ERVK	50528.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-114556775-1	chr4	114556275	114557275	+	717.0	f1_c57bl6.idr	intron (NM_001085549, intron 2 of 6)	intron (NM_001085549, intron 2 of 6)	150051.0	NM_001085549	666048.0	Mm.331779	NM_001085549	ENSMUSG00000070867	Trabd2b	Gm12824|Hkat	TraB domain containing 2B	protein-coding	0.0	0.0	2.5	0.0	1.0	1.0
Merged-chr14-66232423-1	chr14	66231923	66232923	+	717.0	f0_balb.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-18599.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36461494-2	chr17	36460994	36461994	+	717.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177634, exon 3 of 6)	exon (NM_177634, exon 3 of 6)	835.0	NM_177634	224753.0	Mm.246581	NM_177634	ENSMUSG00000048231	H2-M10.4	15H	histocompatibility 2, M region locus 10.4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118594601-2	chr7	118594101	118595101	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331203, intron 1 of 2)	B4A|SINE|B4	2155.0	NM_001331203	381914.0	Mm.291232	NM_001331201	ENSMUSG00000109284	B230311B06Rik	Gm1695	RIKEN cDNA B230311B06 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-103353818-2	chr12	103353318	103354318	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 1 of 9)	intron (NM_023049, intron 1 of 9)	2183.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54528254-2	chr11	54527754	54528754	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 1 of 28)	intron (NM_001252494, intron 1 of 28)	5409.0	NM_001252496	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79571102-2	chr3	79570602	79571602	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152118, intron 1 of 1)	Looper|DNA|PiggyBac	2910.0	NR_152118	75879.0	Mm.410800	NR_152118		4930589L23Rik	-	RIKEN cDNA 4930589L23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-162612756-1	chr1	162612256	162613256	+	717.0	f0_balb.idr	Intergenic	Intergenic	-26394.0	NM_010865	17926.0	Mm.10694	NM_010865	ENSMUSG00000026697	Myoc	AI957332|GLC1A|TIGR	myocilin	protein-coding	3.0	7.5	2.0	7.0	7.5	2.0
Merged-chr6-48772223-3	chr6	48771733	48772733	+	717.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1382.0	NM_031247	83408.0	Mm.333050	NM_031247	ENSMUSG00000039264	Gimap3	2010110D23Rik|Gimap5|Ian4	GTPase, IMAP family member 3	protein-coding	6.0	9.5	5.5	8.0	8.0	4.5
Merged-chr9-107637236-1	chr9	107636736	107637736	+	717.0	f1_balb.idr	Intergenic	Intergenic	-1894.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	0.0	2.0	4.5	0.0	0.0	0.0
Merged-chr10-19183229-1	chr10	19182729	19183729	+	717.0	f1_balb.idr	intron (NR_038022, intron 1 of 1)	RLTR1B|LTR|ERV1	15991.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49016844-1	chr16	49016344	49017344	+	717.0	f0_balb.idr	intron (NM_172616, intron 19 of 20)	intron (NM_172616, intron 19 of 20)	22656.0	NM_172616	224171.0	Mm.24491	NM_172616	ENSMUSG00000033031	C330027C09Rik	AA408511|AU018569|Cip2a|Kiaa1524	RIKEN cDNA C330027C09 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-12015458-1	chr10	12014958	12015958	+	717.0	f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	406234.0	NM_013898	30058.0	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40469721-2	chr12	40469221	40470221	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	23668.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71605457-2	chr8	71604957	71605957	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166213, intron 12 of 14)	intron (NM_001166213, intron 12 of 14)	-5567.0	NM_146211	234407.0	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	2.0	0.0	4.0	5.0	0.0	2.0
Merged-chr6-46142295-1	chr6	46141795	46142795	+	717.0	f0_balb.idr	intron (NM_001004357, intron 8 of 23)	ID_B1|SINE|B4	1082234.0	NM_001004357	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	16.5	0.0	5.0	0.0	1.5	4.5
Merged-chr3-67556298-2	chr3	67555798	67556798	+	717.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-26470.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71638785-1	chr8	71638285	71639285	+	717.0	f1_c57bl6.idr	intron (NM_001029873, intron 34 of 41)	intron (NM_001029873, intron 34 of 41)	-7679.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	0.0	3.0	0.0	4.5	4.0	0.0
Merged-chr17-74272819-1	chr17	74272319	74273319	+	717.0	f1_balb.idr	intron (NM_133771, intron 1 of 8)	RMER17B2|LTR|ERVK	22044.0	NM_133771	76890.0	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding	1.0	1.0	0.0	0.0	2.5	0.0
Merged-chr4-149103343-1	chr4	149102843	149103843	+	717.0	f1_balb.idr	promoter-TSS (NM_010044)	promoter-TSS (NM_010044)	-799.0	NR_104263	13347.0	Mm.41433	NM_010044	ENSMUSG00000028974	Dffa	A330085O09Rik|DFF35|Dff45|ICAD|ICAD-L|ICAD-S	DNA fragmentation factor, alpha subunit	protein-coding	3.0	6.5	3.0	5.5	14.0	0.0
Merged-chr16-25349908-2	chr16	25349408	25350408	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175165, intron 3 of 5)	intron (NM_175165, intron 3 of 5)	63091.0	NM_175165	71338.0	Mm.126851	NM_175165	ENSMUSG00000048399	Tprg	5430420C16Rik|Tprg1	transformation related protein 63 regulated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-69048703-2	chr5	69048203	69049203	+	717.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR2b|LTR|ERVK	293006.0	NM_175519	243043.0	Mm.234821	NM_175519	ENSMUSG00000037653	Kctd8	A730087N02Rik	potassium channel tetramerisation domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-106785467-1	chr6	106784967	106785967	+	717.0	f0_balb.idr	intron (NM_021449, intron 5 of 10)	intron (NM_021449, intron 5 of 10)	14620.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-85602086-2	chr7	85601586	85602586	+	717.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13376.0	NM_001105184	233445.0	Mm.389930	NM_001105184	ENSMUSG00000091205	Vmn2r71	EG233445	vomeronasal 2, receptor 71	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63410001-3	chr14	63409511	63410511	+	717.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007549, intron 1 of 12)	intron (NM_007549, intron 1 of 12)	7176.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19217993-2	chr3	19217493	19218493	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356295, intron 6 of 7)	intron (NM_001356295, intron 6 of 7)	29698.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-143834204-3	chr2	143833720	143834720	+	717.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291061, intron 5 of 7)	intron (NM_001291061, intron 5 of 7)	28953.0	NM_009751	12075.0	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84340830-2	chr10	84340330	84341330	+	717.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99641.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-119896924-2	chr7	119896424	119897424	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029610, intron 1 of 3)	intron (NM_029610, intron 1 of 3)	632.0	NM_029610	73919.0	Mm.46381	NM_029610	ENSMUSG00000030922	Lyrm1	1110065L10Rik|2310004B22Rik|4930404J24Rik	LYR motif containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150513548-2	chr4	150513048	150514048	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 10 of 22)	RSINE1|SINE|B4	138626.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	3.0	1.0	1.0	0.0	4.5	1.0
Merged-chr2-32718995-2	chr2	32718495	32719495	+	717.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2060.0	NR_045535	27387.0	Mm.9593	NM_013781	ENSMUSG00000059013	Sh2d3c	Chat|Nsp3|Shep1	SH2 domain containing 3C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191103993-2	chr1	191103493	191104493	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030060, intron 2 of 2)	intron (NM_030060, intron 2 of 2)	5579.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	2.0	3.5	1.0	0.0	1.5	0.0
Merged-chr1-105809697-2	chr1	105809197	105810197	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009399, intron 3 of 9)	MIRb|SINE|MIR	28974.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-99199202-1	chr4	99198702	99199702	+	717.0	f1_c57bl6.idr	intron (NM_175029, intron 1 of 10)	B2_Mm2|SINE|B2	5055.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	16.5	38.0	16.0	15.0	32.0	14.5
Merged-chr10-62492817-2	chr10	62492317	62493317	+	717.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6012.0	NM_001358543	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-18643476-2	chr19	18642965	18643965	+	717.0	f0_balb.idr|f1_balb.idr	intron (NM_145497, intron 7 of 8)	intron (NM_145497, intron 7 of 8)	11449.0	NM_145497	225994.0	Mm.211595	NM_145497	ENSMUSG00000037847	Nmrk1	AA408380|D630020N23Rik|Nrk1	nicotinamide riboside kinase 1	protein-coding	0.0	5.5	2.0	6.0	8.0	11.0
Merged-chr19-31083868-2	chr19	31083368	31084368	+	717.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_031249, exon 1 of 1)	exon (NM_031249, exon 1 of 1)	1027.0	NM_031249	83410.0	Mm.22031	NM_031249	ENSMUSG00000053536	Cstf2t	64kDa|C77975|tCstF-64|tauCstF-64	cleavage stimulation factor, 3' pre-RNA subunit 2, tau	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12163441-2	chr18	12162941	12163941	+	717.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	U4|snRNA|snRNA	-5289.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115621302-1	chr11	115620802	115621802	+	717.0	f1_c57bl6.idr	intron (NM_001252396, intron 2 of 5)	B3A|SINE|B2	6993.0	NM_001252394	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr7-128242611-2	chr7	128242111	128243111	+	717.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_146205, exon 4 of 6)	exon (NM_146205, exon 4 of 6)	-4201.0	NM_001289553	21804.0	Mm.3248	NM_009365	ENSMUSG00000030782	Tgfb1i1	ARA55|Hic5|TSC-5|hic-5	transforming growth factor beta 1 induced transcript 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83595480-1	chr8	83594980	83595980	+	717.0	f1_balb.idr	promoter-TSS (NM_027179)	promoter-TSS (NM_027179)	-989.0	NM_134118	106529.0	Mm.352239	NM_027179	ENSMUSG00000031708	Tecr	2410016D23Rik|A230102P12Rik|AI173355|D17Ertd178e|Gpsn2|SC2	trans-2,3-enoyl-CoA reductase	protein-coding	37.0	65.0	57.0	21.0	26.5	27.5
Merged-chr19-6343194-2	chr19	6342694	6343694	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_117093, intron 7 of 30)	intron (NR_117093, intron 7 of 30)	2034.0	NR_117093	26412.0	Mm.25860	NM_009006	ENSMUSG00000024948	Map4k2	AI385662|BL44|GCK|Rab8ip	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-33492033-1	chr8	33491533	33492533	+	717.0	f1_c57bl6.idr	Intergenic	Intergenic	7722.0	NR_033589	628431.0	Mm.376526	NR_033589		Hmgb1-rs17	Hmg1-rs17	high mobility group box 1, related sequence 17	pseudo	28.5	51.5	26.0	2.5	14.0	4.0
Merged-chr7-123176065-2	chr7	123175565	123176565	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144925, intron 9 of 23)	intron (NM_144925, intron 9 of 23)	-38801.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-41434796-3	chr9	41434288	41435288	+	717.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131928, intron 3 of 4)	intron (NR_131928, intron 3 of 4)	-40105.0	NR_131931	73144.0	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	7.5	9.0	5.5	6.5	3.0	9.5
Merged-chr17-79714155-2	chr17	79713655	79714655	+	717.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009994, exon 2 of 3)	exon (NM_009994, exon 2 of 3)	886.0	NM_009994	13078.0	Mm.214016	NM_009994	ENSMUSG00000024087	Cyp1b1	CP1B|P4501b1	cytochrome P450, family 1, subfamily b, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8852704-2	chr4	8852204	8853204	+	717.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001277149, exon 26 of 38)	exon (NM_001277149, exon 26 of 38)	101380.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94441863-2	chr8	94441363	94442363	+	717.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER113|DNA|hAT-Charlie	-6760.0	NR_015514	320377.0	Mm.486022	NR_015514		9330175E14Rik	A630085K21	RIKEN cDNA 9330175E14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80001427-2	chr18	80000941	80001941	+	716.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45454.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	10.0	1.0	1.0	5.0	1.0	0.0
Merged-chr3-69114805-2	chr3	69114305	69115305	+	716.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008467, intron 1 of 16)	intron (NM_008467, intron 1 of 16)	12287.0	NM_008467	16649.0	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	17.5	16.0	27.0	10.0	47.0	21.5
Merged-chr2-124707037-4	chr2	124706546	124707546	+	716.912476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53465.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-24703720-3	chr6	24703229	24704229	+	716.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29516.0	NM_028920	74409.0	Mm.87331	NM_028920	ENSMUSG00000029679	Hyal6	4932701A20Rik|Hyal-ps1|Hyalp1	hyaluronoglucosaminidase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29147272-3	chr11	29146775	29147775	+	716.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027869, intron 15 of 27)	(TG)n|Simple_repeat|Simple_repeat	16524.0	NM_027869	71701.0	Mm.211131	NM_027869	ENSMUSG00000020464	Pnpt1	1200003F12Rik|Old35|PNPase|Pnptl1	polyribonucleotide nucleotidyltransferase 1	protein-coding	20.5	34.0	43.5	6.5	46.5	36.0
Merged-chr3-31135643-3	chr3	31135057	31136057	+	716.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14363.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100805674-3	chr11	100805183	100806183	+	716.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113563, intron 2 of 18)	intron (NM_001113563, intron 2 of 18)	16887.0	NM_011489	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143283992-7	chr7	143283556	143284556	+	716.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_001461, exon 1 of 1)	non-coding (NR_001461, exon 1 of 1)	12491.0	NR_001461	63830.0	Mm.356096	NR_001461	ENSMUSG00000101609	Kcnq1ot1	Kvlqt1-as|Lit1|Tssc8	KCNQ1 overlapping transcript 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184063182-4	chr1	184062692	184063692	+	716.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022019, intron 2 of 3)	intron (NM_022019, intron 2 of 3)	28811.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-16855007-3	chr16	16854477	16855477	+	716.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9008.0	NM_001190325	16136.0	Mm.184441	NM_001190325	ENSMUSG00000075370	Igll1	BB139905|Igl-5|Igll|Lambda5	immunoglobulin lambda-like polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127545464-6	chr10	127544909	127545909	+	716.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 75 of 88)	intron (NM_008512, intron 75 of 88)	-10850.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25396078-3	chr2	25395477	25396477	+	716.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009849, exon 1 of 9)	exon (NM_009849, exon 1 of 9)	103.0	NM_009849	12496.0	Mm.482100	NM_009849	ENSMUSG00000015085	Entpd2	Cd39l1|NTPDase2	ectonucleoside triphosphate diphosphohydrolase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9281475-3	chr13	9280988	9281988	+	716.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	4963.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115101452-2	chr5	115100952	115101952	+	716.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6510.0	NM_001271591	100502825.0	Mm.361657	NM_001271590		Rpl37rt	EyeLinc4|Gm13826	ribosomal protein L37, retrotransposed	protein-coding	0.0	3.5	0.5	0.5	0.0	0.0
Merged-chr9-120691757-3	chr9	120691254	120692254	+	716.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114423.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35819531-3	chr17	35819023	35820023	+	716.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2190.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	8.5	5.5	0.0	3.0	0.0	0.0
Merged-chr6-127143324-4	chr6	127142801	127143801	+	716.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009829, intron 3 of 4)	intron (NM_009829, intron 3 of 4)	-6088.0	NR_040274	77558.0	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-9117991-4	chr11	9117490	9118490	+	716.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159402)	promoter-TSS (NM_001159402)	-18.0	NM_001159401	22271.0	Mm.4610	NM_009477	ENSMUSG00000020407	Upp1	AI325217|UPase|UdRPase|Up|Upp	uridine phosphorylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-72813215-3	chr15	72812667	72813667	+	716.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164641, intron 17 of 17)	intron (NM_001164641, intron 17 of 17)	-2843.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	22.0	21.5	7.5	1.5	0.5	0.5
Merged-chr11-21157711-2	chr11	21157211	21158211	+	716.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58842.0	NR_151470	108167888.0		NR_151470		2610024D14Rik	-	ATP synthase subunit g, mitochondrial pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-37656105-2	chr16	37655605	37656605	+	716.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1737.0	NM_026610	68194.0	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93882678-2	chr16	93882178	93883178	+	716.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1223.0	NM_028083	110749.0	Mm.274222	NM_028083	ENSMUSG00000022945	Chaf1b	2600017H24Rik|C76145|CAF-I p60|CAF-Ip60|CAF1|CAF1A|CAF1P60|MPHOSPH7	chromatin assembly factor 1, subunit B (p60)	protein-coding	2.0	2.0	0.0	2.0	2.0	0.0
Merged-chr13-97523967-4	chr13	97523441	97524441	+	716.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36059.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30860110-3	chr7	30859630	30860630	+	716.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_194057)	TTS (NM_194057)	1340.0	NM_194057	233081.0	Mm.425422	NM_194057	ENSMUSG00000044453	Ffar1	Gpr40	free fatty acid receptor 1	protein-coding	0.0	0.5	0.0	0.0	1.0	0.5
Merged-chr6-28485451-4	chr6	28484921	28485921	+	716.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 1 of 23)	L2a|LINE|L2	5073.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-92147763-3	chr9	92147268	92148268	+	716.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45168.0	NM_001195693	100504689.0	Mm.464262	NM_001195693	ENSMUSG00000095654	Plscr5	331000	phospholipid scramblase family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34485184-3	chr8	34484707	34485707	+	716.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	155109.0	NR_040706	330734.0	Mm.149998	NR_040706	ENSMUSG00000109819	B930018H19Rik	B930018H19	RIKEN cDNA B930018H19 gene	ncRNA	1.5	3.0	4.0	9.5	0.0	5.5
Merged-chr9-86016666-1	chr9	86016166	86017166	+	716.666687	f0_balb.idr	Intergenic	Intergenic	173814.0	NM_001164792	21983.0	Mm.20864	NM_011627	ENSMUSG00000035274	Tpbg	5T4|AW495680|WAIF1	trophoblast glycoprotein	protein-coding	7.5	0.0	8.0	3.5	6.0	4.0
Merged-chr13-103869091-3	chr13	103868581	103869581	+	716.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005868, intron 4 of 26)	intron (NM_001005868, intron 4 of 26)	51505.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97576416-2	chr15	97575916	97576916	+	716.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	129406.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124861763-2	chr6	124861263	124862263	+	716.666626	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355257, exon 3 of 6)	5' UTR (NM_001355257, exon 3 of 6)	2220.0	NM_013533	14788.0	Mm.2514	NM_013533	ENSMUSG00000038390	Gpr162	A-2|BC031437|Grca	G protein-coupled receptor 162	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131246750-6	chr1	131246311	131247311	+	716.638916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1633.0	NM_018750	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156475622-6	chr2	156475098	156476098	+	716.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001006664)	promoter-TSS (NM_001006664)	64.0	NM_001006664	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr2-89296655-3	chr2	89296160	89297160	+	716.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_146789, exon 1 of 1)	exon (NM_146789, exon 1 of 1)	608.0	NM_146789	258785.0	Mm.377689	NM_146789	ENSMUSG00000075094	Olfr1230	MOR237-1	olfactory receptor 1230	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45024252-2	chr14	45023752	45024752	+	716.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36141.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110987274-4	chr11	110986778	110987778	+	716.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252207, intron 2 of 2)	intron (NM_001252207, intron 2 of 2)	-10209.0	NM_001252209	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	54.0	126.5	88.5	44.5	77.0	77.5
Merged-chr11-49986397-3	chr11	49985902	49986902	+	716.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-38929.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125083985-4	chr8	125083546	125084546	+	716.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 1 of 12)	intron (NM_174854, intron 1 of 12)	29851.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	91.0	124.0	86.0	48.0	66.0	52.0
Merged-chr12-111439129-2	chr12	111438629	111439629	+	716.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-3532.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8927091-2	chr3	8926591	8927591	+	716.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001025261, exon 8 of 8)	3' UTR (NM_001025261, exon 8 of 8)	-3234.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135486651-2	chr5	135486151	135487151	+	716.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	RSINE1|SINE|B4	58471.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34235031-2	chr7	34234547	34235547	+	716.5	f0_balb.idr|f1_balb.idr	Intergenic	URR1B|DNA|hAT-Charlie	-4711.0	NM_008155	14751.0	Mm.589	NM_008155	ENSMUSG00000036427	Gpi1	Amf|Gpi|Gpi-1|Gpi-1r|Gpi-1s|Gpi-1t|Gpi1-r|Gpi1-s|Gpi1-t|Gpi1s|MF|NK|NK/GPI|Nlk|Org|Pgi|Phi	glucose phosphate isomerase 1	protein-coding	38.0	64.0	70.5	34.5	60.0	54.0
Merged-chr8-70663840-2	chr8	70663340	70664340	+	716.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4102.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-38719946-2	chr9	38719446	38720446	+	716.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172767, intron 2 of 19)	intron (NM_172767, intron 2 of 19)	1678.0	NM_172767	67776.0	Mm.290950	NM_172767	ENSMUSG00000023186	Vwa5a	5830475I06Rik|AW552491|BCSC-1|E130119J22|Loh11cr2a	von Willebrand factor A domain containing 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25352972-2	chr15	25352472	25353472	+	716.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60792.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-8132092-2	chr14	8131592	8132592	+	716.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 4 of 19)	(TG)n|Simple_repeat|Simple_repeat	33881.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-60409386-2	chr3	60408886	60409886	+	716.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63444.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34317068-2	chr17	34316568	34317568	+	716.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010382)	TTS (NM_010382)	-8607.0	NM_001033978	381091.0	Mm.139204	NM_001033978	ENSMUSG00000067341	H2-Eb2	A130038H09Rik|H-2Eb2|Ia-5|Ia5|Iebeta2	histocompatibility 2, class II antigen E beta2	protein-coding	11.0	43.5	30.5	16.0	55.0	27.5
Merged-chr1-134110152-2	chr1	134109652	134110652	+	716.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-1090.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-91148292-2	chr5	91147792	91148792	+	716.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009704, exon 6 of 6)	3' UTR (NM_009704, exon 6 of 6)	8693.0	NM_009704	11839.0	Mm.8039	NM_009704	ENSMUSG00000029378	Areg	AR|Mcub|Sdgf	amphiregulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34301506-2	chr11	34301006	34302006	+	716.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 29 of 51)	intron (NM_033374, intron 29 of 51)	-13316.0	NM_001025382	574403.0	Mm.444796	NM_001025382	ENSMUSG00000069911	Fam196b	EG574403|Gm6041	family with sequence similarity 196, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97448780-2	chr6	97448280	97449280	+	716.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	10506.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68400094-2	chr11	68399594	68400594	+	716.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-13268.0	NM_008744	18208.0	Mm.39095	NM_008744	ENSMUSG00000020902	Ntn1	AI561871|BC019633|Netrin-1	netrin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-123332538-1	chr3	123332038	123333038	+	716.5	f0_balb.idr	intron (NM_027135, intron 10 of 22)	intron (NM_027135, intron 10 of 22)	53452.0	NM_201638	210529.0	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding	114.0	153.0	127.0	35.5	53.5	49.0
Merged-chr15-12195309-2	chr15	12194809	12195809	+	716.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9719.0	NM_001356498	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156859390-2	chr1	156858896	156859896	+	716.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028333, intron 4 of 4)	MTE2a|LTR|ERVL-MaLR	20373.0	NM_028333	72713.0	Mm.389206	NM_028333	ENSMUSG00000033544	Angptl1	2810039D03Rik|ANG3|ANGPT3|ANGY|ARP1	angiopoietin-like 1	protein-coding	27.5	79.5	32.0	30.0	80.5	40.5
Merged-chr6-72738381-2	chr6	72737881	72738881	+	716.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001079822, intron 3 of 12)	intron (NM_001079822, intron 3 of 12)	50664.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-56754855-3	chr10	56754346	56755346	+	716.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	322865.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-45040278-2	chr10	45039778	45040778	+	716.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-26936.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118479309-2	chr9	118478809	118479809	+	716.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010136, exon 1 of 6)	exon (NM_010136, exon 1 of 6)	1120.0	NM_010136	13813.0	Mm.200692	NM_010136	ENSMUSG00000032446	Eomes	C77258|TBR-2|Tbr2	eomesodermin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136156364-2	chr1	136155864	136156864	+	716.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 15 of 34)	intron (NM_001039472, intron 15 of 34)	24974.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102452240-2	chr12	102451740	102452740	+	716.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12427.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	25.0	113.5	59.5	47.0	166.0	84.5
Merged-chr18-46287394-2	chr18	46286894	46287894	+	716.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001160399, exon 7 of 10)	exon (NM_001160399, exon 7 of 10)	-6544.0	NM_172627	225467.0	Mm.262096	NM_172627	ENSMUSG00000024477	Pggt1b	2010207C17Rik|2610100E13|AI451237|AI551093|BGG1|GGT1	protein geranylgeranyltransferase type I, beta subunit	protein-coding	16.5	14.0	9.0	2.0	9.0	10.0
Merged-chr14-61288998-2	chr14	61288498	61289498	+	716.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	16336.0	NR_033788	67355.0	Mm.193728	NR_033788	ENSMUSG00000101505	1700109G14Rik	1700126G13Rik	RIKEN cDNA 1700109G14 gene	ncRNA	0.0	0.0	3.5	0.0	0.0	0.0
Merged-chr11-59216919-4	chr11	59216425	59217425	+	716.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007476, intron 1 of 4)	intron (NM_007476, intron 1 of 4)	8564.0	NM_024210	67862.0	Mm.358708	NM_024210	ENSMUSG00000020441	2310033P09Rik	Mmtag2	RIKEN cDNA 2310033P09 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-151204573-2	chr5	151204073	151205073	+	716.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14380.0	NR_153382	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26972607-2	chr2	26972107	26973107	+	716.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290463)	promoter-TSS (NM_001290463)	-809.0	NM_001290464	279028.0	Mm.330084	NM_001001322	ENSMUSG00000014852	Adamts13	ADAM-TS13|ADAMTS-13|Gm710|vWF-CP	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113054513-2	chr5	113054018	113055018	+	716.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15599.0	NM_007773	12961.0	Mm.1215	NM_007773	ENSMUSG00000042240	Crybb2	Cryb-2	crystallin, beta B2	protein-coding	0.0	1.0	0.5	0.0	0.0	1.5
Merged-chr3-75954161-2	chr3	75953661	75954661	+	716.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291069, intron 1 of 15)	intron (NM_001291069, intron 1 of 15)	2788.0	NM_175193	73124.0	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46396686-2	chr18	46396186	46397186	+	716.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69130.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-85292561-2	chr13	85292061	85293061	+	716.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A1|LTR|ERVL-MaLR	-3075.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	2.0	0.0	2.0	0.0	1.0	0.5
Merged-chr4-25987226-2	chr4	25986726	25987726	+	716.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-187223.0	NM_010243	14348.0	Mm.39101	NM_010243	ENSMUSG00000055373	Fut9	AI746471|AU067636|mFUT9|mFuc-TIX	fucosyltransferase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-44997277-2	chr2	44996777	44997777	+	716.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001355289, exon 9 of 11)	exon (NM_001355289, exon 9 of 11)	25900.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76466370-2	chr15	76465870	76466870	+	716.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013481, intron 3 of 15)	intron (NM_013481, intron 3 of 15)	8932.0	NM_198885	20289.0	Mm.322821	NM_198885	ENSMUSG00000034161	Scx	BB114693|Bhlha41|Scl	scleraxis	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3908915-2	chr19	3908415	3909415	+	716.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_144870)	TTS (NM_144870)	-1782.0	NM_001136091	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136169560-2	chr4	136169060	136170060	+	716.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-2714.0	NM_177733	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152432567-2	chr4	152432067	152433067	+	716.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252655, intron 2 of 14)	intron (NM_001252655, intron 2 of 14)	16288.0	NM_001252655	16498.0	Mm.388924	NM_010598	ENSMUSG00000028931	Kcnab2	F5|I2rf5|Kcnb3|kv-beta-2	potassium voltage-gated channel, shaker-related subfamily, beta member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-46987470-2	chr7	46986970	46987970	+	716.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033461, intron 4 of 4)	intron (NR_033461, intron 4 of 4)	10838.0	NR_033461	629141.0	Mm.229259	NR_033461	ENSMUSG00000056509	Gm9999	-	predicted gene 9999	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27553952-2	chr17	27553594	27554594	+	716.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2480.0	NM_001166536	15361.0	Mm.4438	NM_016660	ENSMUSG00000046711	Hmga1	AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy	high mobility group AT-hook 1	protein-coding	1.5	6.0	3.0	0.0	0.0	0.5
Merged-chr1-134097720-2	chr1	134097220	134098220	+	716.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13522.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5131409-3	chr19	5130901	5131901	+	716.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-12993.0	NM_008451	16594.0	Mm.271648	NM_008451	ENSMUSG00000024862	Klc2	8030455F02Rik|AW212649|KLC 2|KLC-2	kinesin light chain 2	protein-coding	0.0	3.5	0.0	1.5	5.0	1.5
Merged-chr15-103476870-3	chr15	103476375	103477375	+	716.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153505, intron 18 of 30)	intron (NM_153505, intron 18 of 30)	23050.0	NM_153505	105855.0	Mm.30805	NM_153505	ENSMUSG00000022488	Nckap1l	4930568P13Rik|AI463083|Hem1|Hemp1	NCK associated protein 1 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92403177-3	chr16	92402676	92403676	+	716.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-3098.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93421697-2	chr2	93421181	93422181	+	716.416626	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105967)	TTS (NR_105967)	326.0	NR_105967	102465605.0		NR_105967	ENSMUSG00000099238	Mir7001	Gm27886|mmu-mir-7001	microRNA 7001	ncRNA	2.0	0.0	0.0	0.0	1.5	3.5
Merged-chr17-45678305-2	chr17	45677820	45678820	+	716.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_198167, intron 4 of 23)	intron (NM_198167, intron 4 of 23)	7898.0	NM_198167	224807.0	Mm.157904	NM_198167	ENSMUSG00000036026	Tmem63b	BC026370	transmembrane protein 63b	protein-coding	1.0	0.0	0.0	0.0	1.0	0.0
Merged-chr4-40233478-3	chr4	40232974	40233974	+	716.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172689, intron 2 of 17)	BGLII|LTR|ERVK	6351.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91799167-2	chr12	91798667	91799667	+	716.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12731.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132211102-2	chr4	132210602	132211602	+	716.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_145393, intron 2 of 4)	intron (NM_145393, intron 2 of 4)	1154.0	NM_145393	213541.0	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH domain family 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-67564909-4	chr3	67564432	67565432	+	716.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17836.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	1.0	0.0	1.5	0.0	2.0	0.0
Merged-chr14-31582854-2	chr14	31582354	31583354	+	716.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5471.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136519251-3	chr5	136518753	136519753	+	716.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291238, intron 1 of 22)	intron (NM_001291238, intron 1 of 22)	46728.0	NM_001291239	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0.0	5.0	6.0	0.0	14.0	4.5
Merged-chr7-142737122-3	chr7	142736616	142737616	+	716.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57390.0	NM_001185084	16334.0	Mm.4946	NM_008387	ENSMUSG00000000215	Ins2	AA986540|Ins-2|InsII|Mody|Mody4	insulin II	protein-coding	0.0	0.0	10.5	5.5	6.0	5.0
Merged-chr19-55936047-3	chr19	55935478	55936478	+	716.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40657.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103985416-3	chr11	103984900	103985900	+	716.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001304574)	TTS (NM_001304574)	18529.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-48051927-5	chr4	48051529	48052529	+	716.299988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001307989, exon 1 of 3)	exon (NM_001307989, exon 1 of 3)	783.0	NM_001307989	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38378490-4	chr2	38377994	38378994	+	716.287476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27186.0	NM_010710	16870.0	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-26862375-3	chr10	26861878	26862878	+	716.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 5 of 14)	L1MC5|LINE|L1	89866.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30454237-2	chr7	30453737	30454737	+	716.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172898, intron 6 of 14)	intron (NM_172898, intron 6 of 14)	3278.0	NM_172898	243911.0	Mm.113908	NM_172898	ENSMUSG00000036915	Kirrel2	C330019F22Rik|NEPH3|NLG1	kirre like nephrin family adhesion molecule 2	protein-coding	6.5	0.0	3.5	0.0	0.0	0.0
Merged-chr17-74455294-2	chr17	74454794	74455794	+	716.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 1 of 8)	B3|SINE|B2	3814.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26911772-2	chr2	26911272	26912272	+	716.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_013721, intron 3 of 7)	intron (NM_013721, intron 3 of 7)	965.0	NM_013721	27176.0	Mm.328601	NM_013721	ENSMUSG00000062647	Rpl7a	Surf3	ribosomal protein L7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7340740-4	chr19	7340264	7341264	+	716.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080388, intron 1 of 16)	intron (NM_001080388, intron 1 of 16)	1096.0	NM_001080389	13728.0	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32085577-2	chr2	32085077	32086077	+	716.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151493)	promoter-TSS (NR_151493)	-908.0	NR_151493	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-23786184-3	chr10	23785684	23786684	+	716.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037680)	promoter-TSS (NR_037680)	-363.0	NR_037681	100529075.0		NR_037681	ENSMUSG00000080486	Snord100	MBII-429|Z51	small nucleolar RNA, C/D box 100	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101743395-2	chr13	101742895	101743895	+	716.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 2 of 15)	B4|SINE|B4	24822.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3902625-2	chr19	3902184	3903184	+	716.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_016921, exon 8 of 20)	exon (NM_016921, exon 8 of 20)	2546.0	NM_016921	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0.0	1.5	0.0	0.0	0.0	1.5
Merged-chr3-69058302-2	chr3	69057872	69058872	+	716.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13630.0	NM_025863	66949.0	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	4.5	0.0	1.0	1.0	5.5	2.5
Merged-chr18-80720012-2	chr18	80719512	80720512	+	716.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4b|LINE|L1	-6941.0	NM_001164110	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35274250-2	chr17	35273786	35274786	+	716.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	11163.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70967454-2	chr12	70966954	70967954	+	716.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3A1|LTR|ERVK	-7169.0	NM_001310595	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	1.0	1.5	3.5	1.5	0.0	2.5
Merged-chr6-97459076-3	chr6	97458613	97459613	+	716.133362	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	173.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	89.5	335.0	168.5	62.0	236.5	147.0
Merged-chr1-80326186-4	chr1	80325683	80326683	+	716.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016716, intron 1 of 15)	MIR|SINE|MIR	14507.0	NM_001313728	26554.0	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98939247-2	chr11	98938747	98939747	+	716.125	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177303)	promoter-TSS (NM_001177303)	-464.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-40408112-3	chr8	40407629	40408629	+	716.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15686.0	NM_178395	70546.0	Mm.34326	NM_178395	ENSMUSG00000039470	Zdhhc2	5730415P04Rik|6430583A19Rik|DHHC-2	zinc finger, DHHC domain containing 2	protein-coding	0.0	1.0	0.0	0.0	1.0	0.0
Merged-chr17-15567295-2	chr17	15566795	15567795	+	716.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3972.0	NM_144809	213389.0	Mm.215162	NM_144809	ENSMUSG00000051977	Prdm9	BC012016|Dsbc1|G1-419-29|Meisetz|PRDM9-B|Rcr1|repro7	PR domain containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-85619597-2	chr13	85619097	85620097	+	716.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-330111.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	3.5	6.0	2.0	4.5	1.0	0.5
Merged-chr1-165264095-2	chr1	165263595	165264595	+	716.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-27135.0	NM_001357410	226591.0	Mm.21520	NM_145513	ENSMUSG00000040843	Tiprl	1810011K17Rik	TIP41, TOR signalling pathway regulator-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115696322-2	chr11	115695822	115696822	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	3212.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120534156-2	chr8	120533656	120534656	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	-1701.0	NM_001145897	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59080807-2	chr15	59080307	59081307	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 1 of 14)	intron (NM_144800, intron 1 of 14)	1219.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59393836-2	chr11	59393336	59394336	+	716.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18183.0	NM_001045521	216797.0	Mm.339586	NM_001045521	ENSMUSG00000049291	Prss38	Gm249|Mpn2	protease, serine 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55493818-1	chr13	55493318	55494318	+	716.0	f1_c57bl6.idr	Intergenic	Intergenic	-5742.0	NM_001177372	56320.0	Mm.19016	NM_019813	ENSMUSG00000034675	Dbn1	-	drebrin 1	protein-coding	0.0	0.0	0.0	6.5	1.5	0.0
Merged-chr10-75643516-2	chr10	75643016	75644016	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027890, intron 1 of 14)	intron (NM_027890, intron 1 of 14)	492.0	NM_001162913	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60733454-2	chr10	60732954	60733954	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 2 of 5)	intron (NM_023596, intron 2 of 5)	19328.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99953127-3	chr12	99952610	99953610	+	716.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028354, intron 15 of 15)	intron (NM_028354, intron 15 of 15)	-11389.0	NM_001164426	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-73008598-2	chr6	73008098	73009098	+	716.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49850.0	NM_001190327	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-62939199-2	chr5	62938699	62939699	+	716.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125376.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89317560-2	chr3	89317060	89318060	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010108, intron 1 of 4)	intron (NM_010108, intron 1 of 4)	5319.0	NM_010108	13638.0	Mm.331159	NM_010108	ENSMUSG00000028039	Efna3	AW494418|EFL-2|Ehk1-L|Epl3|LERK-3	ephrin A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75820778-1	chr18	75820278	75821278	+	716.0	f1_c57bl6.idr	intron (NM_145356, intron 1 of 4)	GC_rich|Low_complexity|Low_complexity	600.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	5.0	0.0	2.0	0.0	0.0	0.5
Merged-chr6-137387825-2	chr6	137387325	137388325	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 7 of 26)	intron (NM_011216, intron 7 of 26)	-22896.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-73587150-1	chr6	73586650	73587650	+	716.0	f0_balb.idr	Intergenic	Lx8|LINE|L1	-116129.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	0.0	1.0	0.0	0.0	1.0	0.5
Merged-chr17-8905114-1	chr17	8904614	8905614	+	716.0	f0_balb.idr	intron (NM_001347321, intron 2 of 21)	intron (NM_001347321, intron 2 of 21)	55129.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124948568-2	chr8	124948067	124949067	+	716.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_053207, exon 1 of 5)	exon (NM_053207, exon 1 of 5)	687.0	NM_053207	112405.0	Mm.140619	NM_053207	ENSMUSG00000031987	Egln1	AI503754|C1orf12|HIF-PH2|HPH-2|Hif-p4h-2|ORF13|Phd2|SM-20	egl-9 family hypoxia-inducible factor 1	protein-coding	0.0	4.5	5.0	4.0	8.5	1.5
Merged-chr17-65631659-2	chr17	65631159	65632159	+	716.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8097.0	NM_153519	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-4703082-2	chr13	4702582	4703582	+	716.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-93918.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	0.0	0.0	0.0	3.0	0.0	0.0
Merged-chr9-75273129-2	chr9	75272629	75273629	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081322, intron 18 of 40)	intron (NM_001081322, intron 18 of 40)	-33159.0	NM_010313	14697.0	Mm.17604	NM_010313	ENSMUSG00000032192	Gnb5	GBS|Gbeta5|flr	guanine nucleotide binding protein (G protein), beta 5	protein-coding	0.0	3.0	0.0	0.0	0.0	0.0
Merged-chr18-61072608-2	chr18	61072108	61073108	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008809, intron 11 of 22)	intron (NM_008809, intron 11 of 22)	27458.0	NM_008809	18596.0	Mm.4146	NM_008809	ENSMUSG00000024620	Pdgfrb	AI528809|CD140b|PDGFR-1|Pdgfr	platelet derived growth factor receptor, beta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56630414-3	chr17	56629917	56630917	+	716.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175350, intron 1 of 21)	IAPLTR2a|LTR|ERVK	2274.0	NM_175350	106757.0	Mm.23401	NM_175350	ENSMUSG00000040828	Catsperd	4921529N20Rik|4933402B14Rik|619718|AW045609|Gm6095|Tmem146	cation channel sperm associated auxiliary subunit delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134261585-1	chr6	134261085	134262085	+	716.0	f0_balb.idr	intron (NM_001303102, intron 6 of 8)	intron (NM_001303102, intron 6 of 8)	-134744.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	6.5	12.5	11.5	4.5	24.5	12.0
Merged-chr13-107953259-1	chr13	107952759	107953759	+	716.0	f1_c57bl6.idr	Intergenic	Intergenic	-63195.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	17.5	13.0	13.5	12.5	7.0	18.0
Merged-chr4-149614174-2	chr4	149613674	149614674	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290989, intron 2 of 17)	intron (NM_001290989, intron 2 of 17)	27706.0	NM_023051	65945.0	Mm.38993	NM_023051	ENSMUSG00000039953	Clstn1	1810034E21Rik|Cst-1|Cstn1	calsyntenin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124602719-2	chr2	124602219	124603219	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	LTR33|LTR|ERVL	-7577.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-62926661-2	chr13	62926161	62927161	+	716.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38232.0	NM_001289926	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-25044110-2	chr19	25043605	25044605	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 1 of 47)	intron (NM_028785, intron 1 of 47)	44576.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	13.0	44.0	21.0	34.0	35.0	25.5
Merged-chr19-29475033-2	chr19	29474533	29475533	+	716.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46954.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120297923-2	chr2	120297423	120298423	+	716.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8854.0	NM_001024137	78390.0	Mm.330507	NM_001024137	ENSMUSG00000070719	Pla2g4d	2610311B01Rik|Pla2delta|cPLA2delta	phospholipase A2, group IVD	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27377124-2	chr2	27376624	27377624	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	50484.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-36632531-2	chr12	36632023	36633023	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289503, intron 9 of 9)	ORR1F|LTR|ERVL-MaLR	-183682.0	NR_039558	100628578.0		NR_039558	ENSMUSG00000092998	Mir5099	mmu-mir-5099|mu-mir-5099	microRNA 5099	ncRNA	5.0	14.5	8.5	2.0	0.0	4.0
Merged-chr19-21406964-3	chr19	21406457	21407457	+	716.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010266, intron 10 of 13)	intron (NM_010266, intron 10 of 13)	65704.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr2-22622065-2	chr2	22621565	22622565	+	716.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008078)	promoter-TSS (NM_008078)	-262.0	NM_008078	14417.0	Mm.4784	NM_008078	ENSMUSG00000026787	Gad2	6330404F12Rik|GAD(65)|GAD65|Gad-2	glutamic acid decarboxylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17267690-1	chr12	17267190	17268190	+	716.0	f0_balb.idr	intron (NM_027959, intron 1 of 12)	intron (NM_027959, intron 1 of 12)	1095.0	NM_027959	71853.0	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	13.0	36.0	13.5	5.0	23.0	19.5
Merged-chr12-16145809-1	chr12	16145309	16146309	+	716.0	f0_balb.idr	Intergenic	Intergenic	-329024.0	NM_144551	217410.0	Mm.491136	NM_144551	ENSMUSG00000020601	Trib2	AW319517|TRB-2|TRB2	tribbles pseudokinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-93339192-2	chr15	93338692	93339692	+	716.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2257.0	NM_024189	67057.0	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-148894749-2	chr6	148894249	148895249	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181541, intron 2 of 18)	intron (NM_181541, intron 2 of 18)	1488.0	NM_001301351	232560.0	Mm.150568	NM_181541	ENSMUSG00000030309	Caprin2	C1qdc1|Eeg1|rng140	caprin family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-10689077-2	chr10	10688577	10689577	+	716.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_016976, exon 9 of 9)	exon (NM_016976, exon 9 of 9)	-61969.0	NR_046010	78056.0	Mm.271285	NR_046010	ENSMUSG00000112730	4930567K20Rik	1700038H22Rik	RIKEN cDNA 4930567K20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96006946-1	chr11	96006446	96007446	+	716.0	f1_c57bl6.idr	Intergenic	CpG-2488	-1002.0	NM_009951	140486.0	Mm.294769	NM_009951	ENSMUSG00000013415	Igf2bp1	AL024068|AW549074|CRD-BP|Crdbp|D030026A21Rik|D11Moh40e|D11Moh45|IMP-1|IMP1|Neilsen|ZBP-1|Zbp1|mir-3063	insulin-like growth factor 2 mRNA binding protein 1	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr16-95781879-3	chr16	95781383	95782383	+	716.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79476.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139795500-2	chr5	139795000	139796000	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010757, intron 1 of 2)	intron (NM_010757, intron 1 of 2)	3964.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165635589-2	chr1	165635089	165636089	+	716.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1048.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10538362-2	chr16	10537862	10538862	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021428, intron 1 of 1)	intron (NM_021428, intron 1 of 1)	4692.0	NM_021428	58239.0	Mm.353006	NM_021428	ENSMUSG00000038055	Dexi	1810029J14Rik|AI836170|AW413143|D16Bwg0586e|Myle	dexamethasone-induced transcript	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-124456838-2	chr9	124456338	124457338	+	716.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20024.0	NM_001163415	19054.0	Mm.271249	NM_011154	ENSMUSG00000093803	Ppp2r3d	PP2A B''-PR59|PP2A PR59|PR59|Ppp2r3|Ppp2r3a	protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93685901-2	chr16	93685401	93686401	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173047, intron 2 of 2)	intron (NM_173047, intron 2 of 2)	2682.0	NM_173047	109857.0	Mm.4512	NM_173047	ENSMUSG00000022947	Cbr3	1110001J05Rik|C81353	carbonyl reductase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-66846504-2	chr10	66846004	66847004	+	716.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A1|LTR|ERVL-MaLR	73880.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110584435-1	chr11	110583935	110584935	+	716.0	f0_balb.idr	Intergenic	B1_Mur1|SINE|Alu	105095.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0.0	1.0	0.0	1.5	1.0	1.0
Merged-chr13-49212812-2	chr13	49212312	49213312	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026738, intron 1 of 5)	intron (NM_026738, intron 1 of 5)	3214.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-116991420-2	chr8	116990920	116991920	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026572, intron 1 of 4)	intron (NM_026572, intron 1 of 4)	2029.0	NM_026572	68133.0	Mm.258462	NM_026572	ENSMUSG00000034424	Gcsh	1100001L02Rik|5730591C18Rik	glycine cleavage system protein H (aminomethyl carrier)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165689996-1	chr1	165689496	165690496	+	716.0	f0_balb.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	18098.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170277248-3	chr1	170276769	170277769	+	716.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012009)	promoter-TSS (NM_012009)	-49.0	NM_012009	26904.0	Mm.57009	NM_012009	ENSMUSG00000102418	Sh2d1b1	EAT-2|EAT-2A|Eat2|Eat2a|Sh2d1b	SH2 domain containing 1B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96464808-4	chr10	96464263	96465263	+	715.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-152238.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45768018-3	chr17	45767560	45768560	+	715.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	33554.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	0.0	0.5	0.0	4.0	1.0	0.0
Merged-chr10-81041675-3	chr10	81041194	81042194	+	715.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4363.0	NM_134135	106947.0	Mm.5353	NM_134135	ENSMUSG00000046822	Slc39a3	AI845814|ZIP-3|Zip3	solute carrier family 39 (zinc transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97879392-4	chr3	97878836	97879836	+	715.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 1 of 46)	intron (NM_001039376, intron 1 of 46)	9371.0	NM_001289702	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95563003-2	chr10	95562503	95563503	+	715.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358996, intron 1 of 4)	intron (NM_001358996, intron 1 of 4)	1143.0	NM_027722	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-11282483-2	chr10	11281983	11282983	+	715.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168297, intron 1 of 2)	intron (NM_001168297, intron 1 of 2)	896.0	NM_001168297	71865.0	Mm.276229	NM_027968	ENSMUSG00000047648	Fbxo30	1700026A16Rik|MUSA1	F-box protein 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32010547-3	chr16	32010061	32011061	+	715.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7274.0	NM_177103	320213.0	Mm.152890	NM_023801	ENSMUSG00000022772	Senp5	6230429P13Rik|A730063F07Rik|AI851888|BB189556|SMT3IP3	SUMO/sentrin specific peptidase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62560675-3	chr11	62560176	62561176	+	715.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	FordPrefect|DNA|hAT-Tip100	8945.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-28418257-4	chr2	28417746	28418746	+	715.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29695.0	NM_001005420	241289.0	Mm.330095	NM_001005420	ENSMUSG00000035829	Ppp1r26	Gm347|Kiaa0649|mKIAA0649	protein phosphatase 1, regulatory subunit 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-56726858-3	chr16	56726373	56727373	+	715.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172825, intron 15 of 15)	L1MEf|LINE|L1	-9423.0	NM_001357126	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97759533-3	chr6	97759041	97760041	+	715.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47517.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr18-83060045-2	chr18	83059545	83060545	+	715.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139485.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-13442031-2	chr11	13441531	13442531	+	715.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	737010.0	NR_131011	75280.0	Mm.108492	NR_131011	ENSMUSG00000085452	4930554G24Rik	-	RIKEN cDNA 4930554G24 gene	ncRNA	0.5	1.0	2.0	0.0	0.0	0.0
Merged-chr9-7857325-2	chr9	7856825	7857825	+	715.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_007464, intron 5 of 8)	intron (NM_007464, intron 5 of 8)	15845.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31452344-2	chr15	31451748	31452748	+	715.75	f0_balb.idr|f1_balb.idr	intron (NM_145852, intron 1 of 4)	intron (NM_145852, intron 1 of 4)	1441.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0.0	4.5	0.5	0.0	11.0	0.5
Merged-chr6-90712170-2	chr6	90711670	90712670	+	715.722229	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356440, intron 1 of 13)	intron (NM_001356440, intron 1 of 13)	4359.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-52362832-2	chr11	52362332	52363332	+	715.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_011694, intron 1 of 8)	intron (NM_011694, intron 1 of 8)	1970.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38145676-2	chr18	38145176	38146176	+	715.700012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64086.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121378111-2	chr10	121377611	121378611	+	715.6875	f1_balb.idr|f1_c57bl6.idr	exon (NM_029364, exon 6 of 14)	exon (NM_029364, exon 6 of 14)	13021.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116626218-3	chr7	116625720	116626720	+	715.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121851.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120884105-2	chr5	120883605	120884605	+	715.666687	f1_balb.idr|f1_c57bl6.idr	intron (NR_126529, intron 2 of 6)	MusHAL1|LINE|L1	3508.0	NM_011852	23960.0	Mm.389688	NM_011852	ENSMUSG00000066861	Oas1g	AI449562|L2|Mmu-L|Mmu-L2|Oas1b|Oias-1|Oias1	2'-5' oligoadenylate synthetase 1G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-83728675-3	chr9	83728177	83729177	+	715.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37202.0	NR_046066	100039222.0	Mm.405596	NR_046066	ENSMUSG00000100155	Gm2109	-	predicted gene 2109	ncRNA	0.0	0.0	0.5	0.0	3.0	1.0
Merged-chr6-32158463-3	chr6	32157966	32158966	+	715.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 29 of 31)	intron (NM_175750, intron 29 of 31)	108178.0	NM_029587	76382.0	Mm.23510	NM_029587	ENSMUSG00000029766	1700012A03Rik	AI429084	RIKEN cDNA 1700012A03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32166068-3	chr17	32165569	32166569	+	715.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008716, intron 1 of 32)	CpG	783.0	NM_008716	18131.0	Mm.439741	NM_008716	ENSMUSG00000038146	Notch3	AW229011|N3|hpbk	notch 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145654545-2	chr6	145654045	145655045	+	715.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38582.0	NM_009449	22147.0	Mm.270295	NM_009449	ENSMUSG00000067338	Tuba3b	M[a]7|Tuba7	tubulin, alpha 3B	protein-coding	1.5	2.0	4.0	6.5	2.0	0.5
Merged-chr9-45911137-3	chr9	45910668	45911668	+	715.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001281934, exon 5 of 17)	exon (NM_001281934, exon 5 of 17)	-4257.0	NM_001361112	235315.0	Mm.220945	NM_178709	ENSMUSG00000042790	Rnf214	D130054N24Rik	ring finger protein 214	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-45378319-3	chr3	45377841	45378841	+	715.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001098172)	promoter-TSS (NM_001098172)	-57.0	NM_001098172	18526.0	Mm.242644	NM_011043	ENSMUSG00000049100	Pcdh10	6430521D13Rik|6430703F07Rik|OL-pc|mKIAA1400	protocadherin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32236048-2	chr2	32235548	32236548	+	715.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145145)	promoter-TSS (NM_145145)	-635.0	NM_145145	99011.0	Mm.31192	NM_145145	ENSMUSG00000039254	Pomt1	AI505244	protein-O-mannosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120575561-2	chr11	120575061	120576061	+	715.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2308.0	NM_011032	18453.0	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	1.0	5.5	6.0	4.0	6.0	1.5
Merged-chr10-127333359-2	chr10	127332859	127333859	+	715.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010296, intron 11 of 12)	B2_Mm2|SINE|B2	7717.0	NM_001359657	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-14344653-2	chr14	14344153	14345153	+	715.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm-int|LTR|ERVL-MaLR	-1842.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-24595516-3	chr12	24595017	24596017	+	715.650024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145890, intron 6 of 13)	MTC|LTR|ERVL-MaLR	14798.0	NM_145890	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	5.0	4.5	5.0	5.0	1.0	3.0
Merged-chr15-84842674-4	chr15	84842172	84843172	+	715.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356573, intron 2 of 12)	intron (NM_001356573, intron 2 of 12)	12427.0	NM_001356573	271305.0	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-72814137-4	chr17	72813653	72814653	+	715.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22475.0	NM_027166	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	0.0	3.0	0.0	0.0	0.0	0.5
Merged-chr6-87533808-3	chr6	87533299	87534299	+	715.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286610)	promoter-TSS (NM_001286610)	-540.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	22.0	50.0	28.5	10.0	55.0	36.0
Merged-chr5-150375337-3	chr5	150374846	150375846	+	715.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172887, intron 14 of 60)	intron (NM_172887, intron 14 of 60)	115416.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	4.0	0.0	3.5	3.0	0.0	2.0
Merged-chr4-117128133-3	chr4	117127607	117128607	+	715.555542	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013807)	TTS (NM_013807)	1294.0	NM_175030	242646.0	Mm.358914	NM_175030	ENSMUSG00000047671	Tctex1d4	4833401D15Rik	Tctex1 domain containing 4	protein-coding	11.0	1.5	5.0	4.0	18.0	2.0
Merged-chr1-152592630-3	chr1	152592132	152593132	+	715.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	LTR48|LTR|ERV1	32585.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-142343783-3	chr6	142343304	142344304	+	715.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1893.0	NM_183165	232491.0	Mm.490474	NM_183165	ENSMUSG00000041671	Pyroxd1	-	pyridine nucleotide-disulphide oxidoreductase domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-10461698-4	chr10	10461207	10462207	+	715.520813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	10607.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	58.0	147.0	76.0	9.5	32.0	16.5
Merged-chr19-29945075-2	chr19	29944575	29945575	+	715.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164724)	promoter-TSS (NM_001164724)	-715.0	NM_001164724	77125.0	Mm.182359	NM_133775	ENSMUSG00000024810	Il33	9230117N10Rik|Il-33|Il1f11|NF-HEV	interleukin 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59483475-2	chr11	59482975	59483975	+	715.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11001.0	NM_178417	237775.0	Mm.339604	NM_178417	ENSMUSG00000054519	Zfp867	-	zinc finger protein 867	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83060948-2	chr7	83060448	83061448	+	715.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87522.0	NM_177895	330578.0	Mm.5796	NM_177895	ENSMUSG00000053528	A530021J07Rik	-	Riken cDNA A530021J07 gene	protein-coding	0.5	3.5	5.5	6.5	3.0	1.5
Merged-chr13-102694809-2	chr13	102694309	102695309	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360519, intron 1 of 2)	MLT1B|LTR|ERVL-MaLR	1251.0	NM_008533	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-99352543-2	chr13	99352043	99353043	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173757, intron 2 of 10)	MTA_Mm|LTR|ERVL-MaLR	7757.0	NM_173757	218506.0	Mm.30208	NM_173757	ENSMUSG00000041632	Mrps27	2610028H14Rik	mitochondrial ribosomal protein S27	protein-coding	3.5	1.5	0.0	0.0	3.0	0.0
Merged-chr6-39522041-2	chr6	39521541	39522541	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172477, intron 2 of 18)	B4A|SINE|B4	35793.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86915353-2	chr17	86914853	86915853	+	715.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1995.0	NM_001277980	78469.0	Mm.67234	NM_030104	ENSMUSG00000037689	Tmem247	1700090G07Rik	transmembrane protein 247	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56661179-2	chr19	56660679	56661679	+	715.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61193.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59879608-1	chr4	59879108	59880108	+	715.5	f0_balb.idr	intron (NM_172468, intron 4 of 8)	intron (NM_172468, intron 4 of 8)	35448.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	5.0	6.5	2.0	1.0	5.0	12.5
Merged-chr9-32695009-2	chr9	32694509	32695509	+	715.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1033.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	2.0	6.0	3.0	0.0	0.0	5.0
Merged-chr10-120674793-2	chr10	120674293	120675293	+	715.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90939.0	NR_038000	70874.0	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	1.5	1.0	0.0	0.0	0.0	0.0
Merged-chr3-84853000-3	chr3	84852503	84853503	+	715.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177773, intron 1 of 13)	ORR1E|LTR|ERVL-MaLR	-11142.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.5	1.0	2.0	0.0	7.5	1.0
Merged-chr7-141048028-1	chr7	141047528	141048528	+	715.5	f0_balb.idr	Intergenic	Intergenic	-13246.0	NM_177897	330671.0	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96278963-4	chr11	96278457	96279457	+	715.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2948.0	NM_010461	15416.0	Mm.4822	NM_010461	ENSMUSG00000056648	Hoxb8	Hox-2.4	homeobox B8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80815943-2	chr17	80815443	80816443	+	715.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-80850.0	NR_131128	320784.0	Mm.474182	NR_131127	ENSMUSG00000112121	C230072F16Rik	-	RIKEN cDNA C230072F16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-80176186-2	chr2	80175686	80176686	+	715.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46528.0	NM_001355140	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.0	5.0	0.0	2.5	5.0	0.0
Merged-chr6-31189686-2	chr6	31189186	31190186	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 1 of 2)	intron (NR_110470, intron 1 of 2)	28788.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150874634-2	chr4	150874134	150875134	+	715.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	19564.0	NM_133753	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120524912-2	chr5	120524412	120525412	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 10 of 13)	ORR1A2|LTR|ERVL-MaLR	13720.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98915066-2	chr11	98914566	98915566	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025779, intron 7 of 11)	intron (NM_001025779, intron 7 of 11)	6915.0	NM_011799	23834.0	Mm.20912	NM_011799	ENSMUSG00000017499	Cdc6	CDC18L	cell division cycle 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70773576-2	chr8	70773076	70774076	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008841, intron 2 of 15)	intron (NM_008841, intron 2 of 15)	3136.0	NM_008841	18709.0	Mm.12945	NM_008841	ENSMUSG00000031834	Pik3r2	p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr11-23774051-2	chr11	23773551	23774551	+	715.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3081.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140333787-2	chr5	140333287	140334287	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356584, intron 2 of 4)	B3|SINE|B2	1831.0	NM_001356584	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	0.0	1.5	0.0	0.0	0.0	4.0
Merged-chr10-81543826-2	chr10	81543326	81544326	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010301, intron 1 of 6)	intron (NM_010301, intron 1 of 6)	1220.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31094759-2	chr5	31094259	31095259	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347323, intron 1 of 8)	intron (NM_001347323, intron 1 of 8)	-1232.0	NM_011773	22784.0	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	0.0	1.0	1.5	0.0	1.0	1.0
Merged-chr10-79818770-2	chr10	79818270	79819270	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023128, intron 8 of 8)	intron (NM_023128, intron 8 of 8)	-2251.0	NM_030218	78906.0	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-81708701-2	chr17	81708201	81709201	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	29686.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-75553194-2	chr17	75552694	75553694	+	715.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-1248.0	NM_001357860	72722.0	Mm.24641	NM_133747	ENSMUSG00000002017	Fam98a	2810405J04Rik|AL024114	family with sequence similarity 98, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122566267-2	chr8	122565767	122566767	+	715.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-1748.0	NM_026014	67177.0	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	21.5	23.0	28.5	8.5	44.0	24.5
Merged-chr9-104192788-2	chr9	104192288	104193288	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 30 of 56)	intron (NM_001359740, intron 30 of 56)	-66145.0	NM_145700	252837.0	Mm.269254	NM_145700	ENSMUSG00000079355	Ackr4	A630091E18Rik|CCBP2|CCR11|CCX-CKR|CCX-CKR1|Ccrl1|Cmkbrl1|PPR1|VSHK1	atypical chemokine receptor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3261301-2	chr19	3260801	3261801	+	715.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009212, exon 15 of 15)	3' UTR (NM_009212, exon 15 of 15)	21709.0	NM_009212	20589.0	Mm.3179	NM_009212	ENSMUSG00000024831	Ighmbp2	AEP|Catf1|RIPE3b1|Smbp-2|Smbp2|Smubp2|nmd|sma	immunoglobulin mu binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34801220-2	chr2	34800720	34801720	+	715.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1308.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6426057-1	chr15	6425557	6426557	+	715.5	f0_balb.idr	intron (NM_001008702, intron 9 of 13)	intron (NM_001008702, intron 9 of 13)	-19276.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-22984370-2	chr4	22983870	22984870	+	715.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	493822.0	NR_131335	105500046.0		NR_131335	ENSMUSG00000107859	Gm30731	Pnky|lnc-pou3f2	predicted gene, 30731	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61727162-2	chr18	61726689	61727689	+	715.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021296)	promoter-TSS (NM_021296)	799.0	NR_029432	68982.0	Mm.441992	NR_029432	ENSMUSG00000098702	1500015A07Rik	-	RIKEN cDNA 1500015A07 gene	ncRNA	18.0	42.0	41.0	28.0	54.5	37.5
Merged-chr11-94591144-2	chr11	94590644	94591644	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153807, intron 1 of 15)	RLTR20B3|LTR|ERVK	10642.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43805640-2	chr1	43805140	43806140	+	715.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026430, exon 3 of 15)	exon (NM_026430, exon 3 of 15)	22068.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101652983-3	chr4	101652435	101653435	+	715.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175036, intron 2 of 3)	intron (NM_175036, intron 2 of 3)	5152.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	43.0	122.0	118.0	90.0	191.5	206.0
Merged-chr5-103915021-2	chr5	103914521	103915521	+	715.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3762.0	NM_001359986	246293.0	Mm.179871	NM_178741	ENSMUSG00000029312	Klhl8	2310001P09Rik|D5Ertd431e	kelch-like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21550476-2	chr11	21549975	21550975	+	715.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21459.0	NM_008618	17449.0	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	17.0	38.0	26.5	16.5	26.0	24.0
Merged-chr19-5662167-2	chr19	5661667	5662667	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164480, intron 1 of 16)	B1_Mus1|SINE|Alu	1540.0	NM_001164482	20469.0	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88887397-2	chr5	88886897	88887897	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359211, intron 1 of 26)	CpG	137.0	NM_018760	54403.0	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106307449-2	chr9	106306949	106307949	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 8 of 10)	MIRb|SINE|MIR	26388.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	19.5	41.5	35.5	9.0	17.0	26.5
Merged-chr3-37648634-3	chr3	37648123	37649123	+	715.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8676.0	NM_011896	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28722460-3	chr17	28721918	28722918	+	715.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168513, intron 3 of 11)	PB1D10|SINE|Alu	29850.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91076475-3	chr16	91075990	91076990	+	715.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7345.0	NM_028905	74387.0	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148760404-3	chr4	148759914	148760914	+	715.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD3|LINE|L1	-43978.0	NM_001159344	69743.0	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	5.5	8.0	3.5	2.5	6.0	1.5
Merged-chr5-99233269-3	chr5	99232720	99233720	+	715.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 6 of 13)	intron (NM_181318, intron 6 of 13)	19707.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-107576865-4	chr8	107576350	107577350	+	715.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11632.0	NM_010817	17463.0	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-175936615-4	chr1	175936136	175937136	+	715.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16307.0	NM_001290692	226720.0	Mm.11282	NM_001290692	ENSMUSG00000104158	Becn2	Beclin-2|Gm104	beclin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91110639-2	chr2	91110139	91111139	+	715.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011355, intron 2 of 4)	B3A|SINE|B2	-7505.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	1.5	1.0	6.5	3.0	5.5	16.0
Merged-chr18-75506139-2	chr18	75505637	75506637	+	715.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 9 of 11)	intron (NM_201354, intron 9 of 11)	-8508.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	1.0	4.5	8.0	2.0	3.5	2.5
Merged-chr6-26205298-2	chr6	26204798	26205798	+	715.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	273872.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-140943380-2	chr7	140942880	140943880	+	715.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_145387, exon 4 of 14)	exon (NM_145387, exon 4 of 14)	1989.0	NM_145387	212974.0	Mm.260139	NM_145387	ENSMUSG00000062031	Pgghg	5730511L01Rik|Athl1|BC023151	protein glucosylgalactosylhydroxylysine glucosidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90083183-2	chr3	90082675	90083675	+	715.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357581, intron 1 of 8)	intron (NM_001357581, intron 1 of 8)	3654.0	NM_001293749	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	53.0	61.0	49.0	33.5	60.5	62.5
Merged-chr19-22108739-3	chr19	22108227	22109227	+	715.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30390.0	NM_001035239	226025.0	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73609015-2	chr13	73608515	73609515	+	715.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_146047, intron 5 of 16)	intron (NM_146047, intron 5 of 16)	5013.0	NM_146047	218335.0	Mm.30099	NM_146047	ENSMUSG00000021610	Clptm1l	C130052I12Rik|Crr9	CLPTM1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31432031-3	chr3	31431535	31432535	+	715.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-121716.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35384375-3	chr12	35383890	35384890	+	715.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150599.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	10.5	0.0	4.5	1.0	0.5	16.5
Merged-chr8-11393736-1	chr8	11393236	11394236	+	715.333313	f0_balb.idr	intron (NM_009932, intron 4 of 47)	ID2|SINE|ID	-80910.0	NM_009931	12826.0	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150073936-2	chr4	150073436	150074436	+	715.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	5482.0	NR_029751	723848.0		NR_029751	ENSMUSG00000065493	Mir34a	Mirn34a|mir-34a|mmu-mir-34a	microRNA 34a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59626662-1	chr4	59626162	59627162	+	715.333313	f0_c57.idr	intron (NM_001015681, intron 1 of 3)	CpG	451.0	NM_153158	230259.0	Mm.45688	NM_153158	ENSMUSG00000045071	E130308A19Rik	-	RIKEN cDNA E130308A19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109029734-4	chr3	109029227	109030227	+	715.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2120.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	0.0	8.0	0.5	0.0	4.0	1.5
Merged-chr19-9992450-3	chr19	9991973	9992973	+	715.277771	f1_balb.idr|f1_c57bl6.idr	intron (NM_011913, intron 4 of 11)	intron (NM_011913, intron 4 of 11)	9160.0	NM_011913	24115.0	Mm.31577	NM_011913	ENSMUSG00000037418	Best1	Bmd|Vmd2|mBest1	bestrophin 1	protein-coding	10.5	1.0	6.0	0.0	12.5	1.0
Merged-chr1-181125343-4	chr1	181124845	181125845	+	715.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026171, intron 10 of 22)	ORR1D1|LTR|ERVL-MaLR	18859.0	NM_026171	67459.0	Mm.263464	NM_026171	ENSMUSG00000026516	Nvl	1200009I24Rik	nuclear VCP-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76959567-2	chr12	76959067	76960067	+	715.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146176, intron 1 of 3)	B1F|SINE|Alu	2681.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-34665000-3	chr12	34664508	34665508	+	715.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-136119.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	12.0	13.5	17.0	1.5	11.0	12.0
Merged-chr13-23534293-3	chr13	23533805	23534805	+	715.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175661)	TTS (NM_175661)	394.0	NM_175661	319173.0	Mm.377878	NM_175661	ENSMUSG00000061991	Hist1h2af	H2a-221	histone cluster 1, H2af	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122806103-4	chr10	122805604	122806604	+	715.174988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 3 of 9)	intron (NM_001110218, intron 3 of 9)	126789.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0.0	1.5	4.0	8.5	4.5	6.0
Merged-chr17-62687536-3	chr17	62687026	62688026	+	715.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010109, intron 1 of 3)	intron (NM_010109, intron 1 of 3)	193791.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152525703-2	chr1	152525203	152526203	+	715.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 15 of 17)	intron (NM_016846, intron 15 of 17)	99514.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-115903051-3	chr4	115902554	115903554	+	715.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12388.0	NM_001357060	76237.0	Mm.101606	NM_001357060	ENSMUSG00000034185	6430628N08Rik	-	RIKEN cDNA 6430628N08 gene	protein-coding	0.0	0.0	0.0	2.5	0.0	0.0
Merged-chr7-35116253-2	chr7	35115753	35116753	+	715.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3040.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	11.0	2.5	7.0	7.0	13.0	4.0
Merged-chr5-150157938-2	chr5	150157454	150158454	+	715.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101976.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	8.0	0.5	2.5	0.0	0.0	1.0
Merged-chr4-134371657-2	chr4	134371157	134372157	+	715.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_019578, exon 1 of 11)	exon (NM_019578, exon 1 of 11)	890.0	NM_001355493	56219.0	Mm.30978	NM_019578	ENSMUSG00000028838	Extl1	D430033M16Rik	exostoses (multiple)-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr6-97510010-2	chr6	97509510	97510510	+	715.133301	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-22190.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	12.5	31.0	16.5	9.5	28.5	14.5
Merged-chr8-78649114-3	chr8	78648648	78649648	+	715.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009981, intron 5 of 10)	intron (NM_001009981, intron 5 of 10)	139820.0	NM_001282108	76775.0	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-94587263-3	chr3	94586761	94587761	+	715.083313	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-4545.0	NM_029721	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	0.0	0.0	3.0	3.0	8.5	5.0
Merged-chr4-102513868-5	chr4	102513391	102514391	+	715.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	MER44B|DNA|TcMar-Tigger	-56169.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.0	8.0	1.0	5.0	6.0	8.0
Merged-chr18-5158172-2	chr18	5157672	5158672	+	715.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7559.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113546014-2	chr13	113545514	113546514	+	715.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-43170.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130266748-2	chr5	130266248	130267248	+	715.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153350, intron 3 of 15)	intron (NR_153350, intron 3 of 15)	9711.0	NM_001015876	100929.0	Mm.271296	NM_178897	ENSMUSG00000056310	Tyw1	AW125391|Rsafd1	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117089822-2	chr10	117089322	117090322	+	715.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177798, intron 4 of 9)	intron (NM_177798, intron 4 of 9)	-25970.0	NM_007636	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6403605-3	chr15	6403110	6404110	+	715.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	(TTTTG)n|Simple_repeat|Simple_repeat	16862.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103054986-2	chr14	103054486	103055486	+	715.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008392, exon 5 of 5)	exon (NM_008392, exon 5 of 5)	7974.0	NM_008392	16365.0	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-72438757-1	chr4	72438257	72439257	+	715.0	f0_balb.idr	Intergenic	RMER19B|LTR|ERVK	237513.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100652396-2	chr13	100651896	100652896	+	715.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015889, intron 1 of 2)	ID_B1|SINE|B4	789.0	NM_001015889	108143.0	Mm.301148	NM_027139	ENSMUSG00000052293	Taf9	2310012M09Rik|AA673500|AU045423|TAFII31|TAFII32|Taf2g	TATA-box binding protein associated factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-3509945-1	chr17	3509445	3510445	+	715.0	f1_c57bl6.idr	intron (NM_011878, intron 20 of 26)	intron (NM_011878, intron 20 of 26)	-22609.0	NM_001101560	621628.0	Mm.469914	NM_001101560	ENSMUSG00000091530	Cldn20	EG621628	claudin 20	protein-coding	0.0	0.5	1.0	2.5	0.0	0.0
Merged-chr3-58672837-1	chr3	58672337	58673337	+	715.0	f1_balb.idr	Intergenic	Intergenic	19551.0	NM_009174	20439.0	Mm.2847	NM_009174	ENSMUSG00000036432	Siah2	AA415433|Sinh2	siah E3 ubiquitin protein ligase 2	protein-coding	8.0	20.0	2.5	1.5	19.5	2.5
Merged-chr18-5133685-2	chr18	5133185	5134185	+	715.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32046.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24639029-2	chr17	24638529	24639529	+	715.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023449)	TTS (NM_023449)	5928.0	NM_023449	65962.0	Mm.21587	NM_023055	ENSMUSG00000002504	Slc9a3r2	0610011L07Rik|1200011K07Rik|2010007A20Rik|E3karp|NHERF-2|Nherf2|Octs2|Sip-1|Sip1|Sryip1|Tka-1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	protein-coding	2.5	0.0	0.0	6.5	2.5	0.0
Merged-chr2-3511310-2	chr2	3510810	3511810	+	715.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_149715, intron 1 of 4)	intron (NR_149715, intron 1 of 4)	1504.0	NR_103465	50497.0	Mm.89341	NM_015765	ENSMUSG00000051396	Hspa14	70kDa|HSP70L1|Hsp70-4|NST-1|hsr.1	heat shock protein 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-107853960-3	chr5	107853463	107854463	+	715.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007964, intron 1 of 17)	ORR1D1-int|LTR|ERVL-MaLR	21144.0	NM_007964	14020.0	Mm.35796	NM_007964	ENSMUSG00000011831	Evi5	NB4S	ecotropic viral integration site 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-92829057-2	chr13	92828557	92829557	+	715.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15730.0	NM_001162945	382793.0	Mm.296770	NM_001162945	ENSMUSG00000021704	Mtx3	4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514	metaxin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-57539402-2	chr12	57538902	57539902	+	715.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6709.0	NM_008259	15375.0	Mm.4578	NM_008259	ENSMUSG00000035451	Foxa1	Hnf-3a|Hnf3a|Tcf-3a|Tcf3a	forkhead box A1	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr9-44737410-2	chr9	44736910	44737910	+	715.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2212.0	NM_153537	102693.0	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173352963-2	chr2	173352463	173353463	+	715.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76430.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23963433-1	chr17	23962933	23963933	+	715.0	f1_c57bl6.idr	Intergenic	Intergenic	-8160.0	NM_001077421	638345.0	Mm.46428	NM_001077421	ENSMUSG00000024125	Sbpl	2310068J22Rik	spermine binding protein-like	protein-coding	0.0	3.0	1.0	3.0	4.5	0.0
Merged-chr11-97128196-2	chr11	97127696	97128696	+	715.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12865.0	NM_019507	57765.0	Mm.94519	NM_019507	ENSMUSG00000001444	Tbx21	TBT1|Tbet|Tblym	T-box 21	protein-coding	0.0	2.0	0.0	0.0	0.0	0.0
Merged-chr2-37419198-2	chr2	37418698	37419698	+	715.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001100591, intron 2 of 21)	intron (NM_001100591, intron 2 of 21)	3705.0	NM_001100591	319817.0	Mm.288785	NM_001100591	ENSMUSG00000075376	Rc3h2	2900024N03Rik|9430019J22Rik|D930043C02Rik|Mnab|Rnf164	ring finger and CCCH-type zinc finger domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-28416815-1	chr15	28416315	28417315	+	715.0	f0_balb.idr	intron (NM_133365, intron 65 of 78)	intron (NM_133365, intron 65 of 78)	213049.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27026712-1	chr17	27026212	27027212	+	715.0	f1_c57bl6.idr	intron (NR_149749, intron 1 of 6)	intron (NR_149749, intron 1 of 6)	1915.0	NM_007523	12018.0	Mm.2443	NM_007523	ENSMUSG00000057789	Bak1	Bak|N-BAK1|N-Bak	BCL2-antagonist/killer 1	protein-coding	8.0	26.5	7.5	2.0	28.0	8.0
Merged-chr17-6959087-2	chr17	6958587	6959587	+	715.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_147155, intron 2 of 3)	intron (NM_147155, intron 2 of 3)	2069.0	NM_147155	380608.0	Mm.371734	NM_147155	ENSMUSG00000052031	Tagap1	2610315E15Rik|AA415005|FKSG15	T cell activation GTPase activating protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-18646525-1	chr11	18646025	18647025	+	715.0	f1_balb.idr	Intergenic	RMER1A|Other|Other	372444.0	NM_001193271	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	4.5	0.0	3.0	1.5	4.0	0.0
Merged-chr16-49818136-1	chr16	49817636	49818636	+	715.0	f0_balb.idr	Intergenic	MER21B|LTR|ERVL	-37518.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58919846-1	chr11	58919346	58920346	+	715.0	f1_c57bl6.idr	intron (NM_138678, intron 3 of 4)	GA-rich|Low_complexity|Low_complexity	1789.0	NM_138678	192194.0	Mm.22540	NM_138678	ENSMUSG00000020490	Btnl10	BUTR-1|Butr1	butyrophilin-like 10	protein-coding	1.0	3.0	6.5	0.0	2.0	0.0
Merged-chr18-16935196-2	chr18	16934696	16935696	+	715.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	-100312.0	NR_130158	75433.0	Mm.60907	NR_130158	ENSMUSG00000087170	1700001G01Rik	-	RIKEN cDNA 1700001G01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113149681-1	chr12	113149181	113150181	+	715.0	f1_balb.idr	Intergenic	Intergenic	-2331.0	NM_007763	12925.0	Mm.272368	NM_007763	ENSMUSG00000006360	Crip1	CRHP|CRP1|Crip	cysteine-rich protein 1 (intestinal)	protein-coding	1.5	0.0	2.5	2.5	6.0	0.0
Merged-chr8-57595046-2	chr8	57594546	57595546	+	715.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 1 of 11)	intron (NM_001167981, intron 1 of 11)	-56707.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12018189-2	chr19	12017689	12018689	+	715.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	18551.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-50699164-3	chr10	50698665	50699665	+	715.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 14 of 41)	intron (NM_198007, intron 14 of 41)	106496.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-140704135-2	chr4	140703635	140704635	+	715.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173867, intron 2 of 12)	intron (NM_173867, intron 2 of 12)	2662.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	3.5	3.0	5.0	0.0	0.0	6.0
Merged-chr11-51920826-2	chr11	51920326	51921326	+	715.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-46805.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88729998-2	chr10	88729498	88730498	+	715.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001037166, exon 1 of 1)	3' UTR (NM_001037166, exon 1 of 1)	1103.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-71310600-2	chr12	71310100	71311100	+	715.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190466, intron 1 of 3)	intron (NM_001190466, intron 1 of 3)	716.0	NM_001190466	59036.0	Mm.46662	NM_021532	ENSMUSG00000044548	Dact1	4921528D17Rik|AI115603|DAPPER|DAPPER1|FRODO|Frd1|Frodo1|MDpr1|MTNG3|THYEX3	dishevelled-binding antagonist of beta-catenin 1	protein-coding	0.0	0.0	2.5	0.0	2.0	4.0
Merged-chr12-4450671-2	chr12	4450171	4451171	+	715.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010881, intron 1 of 22)	MLTR14|LTR|ERV1	26511.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-131834203-2	chr4	131833703	131834703	+	715.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083119, intron 1 of 30)	intron (NM_001083119, intron 1 of 30)	4075.0	NM_011214	19273.0	Mm.4860	NM_011214	ENSMUSG00000028909	Ptpru	Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda	protein tyrosine phosphatase, receptor type, U	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87658743-2	chr1	87658243	87659243	+	715.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	38431.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33995922-1	chr17	33995422	33996422	+	715.0	f1_balb.idr	TTS (NM_001347346)	TTS (NM_001347346)	4411.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	11.0	22.0	14.0	3.0	9.0	14.0
Merged-chr16-87713991-2	chr16	87713491	87714491	+	715.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	B3A|SINE|B2	15037.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12031697-2	chr15	12031197	12032197	+	715.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35690.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-39006286-3	chr2	39005780	39006780	+	715.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1149.0	NM_025592	66489.0	Mm.345333	NM_025592	ENSMUSG00000062997	Rpl35	2410039E09Rik	ribosomal protein L35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28991816-2	chr7	28991316	28992316	+	715.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355054, intron 17 of 31)	B3|SINE|B2	8962.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86518592-2	chr6	86518092	86519092	+	715.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7597.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-93094465-4	chr13	93093982	93094982	+	715.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046182)	promoter-TSS (NR_046182)	-351.0	NR_046182	408254.0	Mm.474857	NR_046182	ENSMUSG00000114968	A630019I02Rik	-	RIKEN cDNA A630019I02 gene	ncRNA	0.5	2.5	0.0	0.0	10.5	0.5
Merged-chr14-60910342-4	chr14	60909826	60910826	+	715.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	125760.0	NR_040642	70478.0	Mm.274650	NM_027436	ENSMUSG00000021993	Mipep	5730405E07Rik|MIP	mitochondrial intermediate peptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-14448556-1	chr6	14448056	14449056	+	715.0	f1_balb.idr	Intergenic	Lx8|LINE|L1	306718.0	NM_080464	140491.0	Mm.209429	NM_080464	ENSMUSG00000042717	Ppp1r3a	GM|RG1|RGL	protein phosphatase 1, regulatory (inhibitor) subunit 3A	protein-coding	0.0	0.0	2.0	12.0	0.0	3.0
Merged-chr18-39345700-2	chr18	39345200	39346200	+	715.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 20 of 21)	intron (NM_001361073, intron 20 of 21)	141545.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	1.0	6.5	0.0	1.0	4.0	0.0
Merged-chr7-126794877-2	chr7	126794377	126795377	+	715.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177308)	TTS (NM_001177308)	-2330.0	NM_019674	56420.0	Mm.41998	NM_019674	ENSMUSG00000030697	Ppp4c	1110002D08Rik|AU016079|PP-X|PP4C|Ppx|pp4	protein phosphatase 4, catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-7953333-1	chr8	7952833	7953833	+	715.0	f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	707440.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.0	0.0	5.0	0.0	0.0	6.5
Merged-chr6-29319153-2	chr6	29318653	29319653	+	715.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289663)	promoter-TSS (NM_001289663)	13.0	NM_001289664	330277.0	Mm.87624	NM_207258	ENSMUSG00000039742	Fam71f1	GARI-L1|Gm764|NYD-SP18	family with sequence similarity 71, member F1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138322341-2	chr1	138321841	138322841	+	715.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48603.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-41135819-2	chr9	41135319	41136319	+	715.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	22243.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	11.0	20.0	13.5	11.5	21.5	27.5
Merged-chr7-79947655-2	chr7	79947155	79948155	+	715.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12391.0	NM_027420	70420.0	Mm.34266	NM_027420	ENSMUSG00000039043	Arpin	2610034B18Rik	actin-related protein 2/3 complex inhibitor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17546543-2	chr12	17546043	17547043	+	715.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013614, intron 1 of 11)	intron (NM_013614, intron 1 of 11)	1670.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	3.5	4.0	7.0	4.0	7.0	1.0
Merged-chr8-124229429-2	chr8	124228933	124229933	+	714.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1961.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	49.0	117.0	75.5	65.5	68.5	37.5
Merged-chr3-95065738-3	chr3	95065261	95066261	+	714.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293707, intron 10 of 14)	intron (NM_001293707, intron 10 of 14)	-23147.0	NM_008951	19185.0	Mm.2261	NM_008951	ENSMUSG00000005625	Psmd4	Af1|Mcb1|angiocidin	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129700393-3	chr2	129699891	129700891	+	714.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018863)	promoter-TSS (NM_018863)	-453.0	NM_018863	18610.0	Mm.6239	NM_018863	ENSMUSG00000027400	Pdyn	Dyn	prodynorphin	protein-coding	0.0	1.5	4.5	0.5	0.0	4.0
Merged-chr4-123506385-2	chr4	123505885	123506885	+	714.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001199136, exon 17 of 98)	exon (NM_001199136, exon 17 of 98)	-94474.0	NM_001167918	442834.0	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171974094-2	chr1	171973595	171974595	+	714.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	53200.0	NM_033509	93840.0	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	VANGL planar cell polarity 2	protein-coding	2.0	10.5	7.5	8.5	20.5	5.5
Merged-chr16-91457557-2	chr16	91457057	91458057	+	714.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-7547.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	1.5	10.0	5.5	0.5	5.5	6.5
Merged-chr17-56608736-2	chr17	56608236	56609236	+	714.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_153152, intron 2 of 3)	intron (NM_153152, intron 2 of 3)	1035.0	NM_153152	224904.0	Mm.34002	NM_153152	ENSMUSG00000049760	2410015M20Rik	Mic13|QIL1|sr104	RIKEN cDNA 2410015M20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143059007-4	chr5	143058473	143059473	+	714.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	54047.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45151465-2	chr7	45150962	45151962	+	714.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_145954, intron 1 of 16)	L1MC5|LINE|L1	-2841.0	NM_029406	68845.0	Mm.181689	NM_029406	ENSMUSG00000003423	Pih1d1	1110061L23Rik|4933413A04Rik|Nop17	PIH1 domain containing 1	protein-coding	31.5	26.5	23.5	30.5	40.0	37.0
Merged-chr8-46969480-2	chr8	46968980	46969980	+	714.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17407.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4494363-3	chr12	4493844	4494844	+	714.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17162.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22649777-3	chr9	22649279	22650279	+	714.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360259, intron 15 of 22)	intron (NM_001360259, intron 15 of 22)	174064.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80295401-2	chr17	80294901	80295901	+	714.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360440, intron 2 of 3)	intron (NM_001360440, intron 2 of 3)	-4925.0	NM_001163759	106794.0	Mm.12412	NM_198942	ENSMUSG00000035051	Dhx57	AW494914	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105811299-3	chr3	105810785	105811785	+	714.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4282.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	5.5	2.5	4.5	2.5	3.0	4.5
Merged-chr8-13153376-2	chr8	13152872	13153872	+	714.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5789.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88927311-3	chr6	88926881	88927881	+	714.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25130.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117331750-4	chr11	117331235	117332235	+	714.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113488)	promoter-TSS (NM_001113488)	20.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125727496-3	chr8	125727003	125728003	+	714.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6700.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74650411-3	chr11	74649912	74650912	+	714.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081158, intron 1 of 25)	intron (NM_001081158, intron 1 of 25)	917.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10878241-2	chr16	10877741	10878741	+	714.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36556.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64346635-2	chr5	64346135	64347135	+	714.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 18 of 18)	intron (NM_001289514, intron 18 of 18)	116278.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.5	0.0	1.0	0.0	0.0	2.5
Merged-chr3-60499395-2	chr3	60498895	60499895	+	714.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253713, intron 2 of 9)	intron (NM_001253713, intron 2 of 9)	-1784.0	NM_001253710	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96704885-2	chr3	96704385	96705385	+	714.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_146135, exon 14 of 14)	exon (NM_146135, exon 14 of 14)	3675.0	NM_001162925	78373.0	Mm.423186	NM_030094	ENSMUSG00000028100	Nudt17	2410015C20Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-63043396-2	chr17	63042896	63043896	+	714.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-162079.0	NM_010109	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66149860-2	chr14	66149360	66150360	+	714.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_144803, intron 6 of 6)	intron (NM_144803, intron 6 of 6)	8900.0	NM_144803	110902.0	Mm.57350	NM_144803	ENSMUSG00000022041	Chrna2	Acra-2|Acra2|BC011490	cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108768525-2	chr6	108768070	108769070	+	714.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	-14489.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-12996661-2	chr10	12996161	12997161	+	714.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11789.0	NM_175102	66125.0	Mm.29743	NM_175102	ENSMUSG00000078348	Sf3b5	10kDa|1110005L13Rik|AU043053|Sf3b10	splicing factor 3b, subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62869805-2	chr4	62869309	62870309	+	714.75	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-95765.0	NM_028326	72701.0	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr8-105634730-2	chr8	105634230	105635230	+	714.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_151742, intron 1 of 1)	(TG)n|Simple_repeat|Simple_repeat	-1808.0	NM_181322	13018.0	Mm.269474	NM_181322	ENSMUSG00000005698	Ctcf	AW108038	CCCTC-binding factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-123346101-3	chr7	123345564	123346564	+	714.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	23851.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88087845-3	chr3	88087346	88088346	+	714.700012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033484, intron 4 of 37)	B2_Mm2|SINE|B2	5795.0	NM_001033484	404710.0	Mm.331133	NM_001033484	ENSMUSG00000028068	Iqgap3	AI593484|D030034H08	IQ motif containing GTPase activating protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79825669-2	chr10	79825169	79826169	+	714.6999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_030218, intron 1 of 4)	intron (NM_030218, intron 1 of 4)	4648.0	NM_030218	78906.0	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52510418-2	chr2	52509918	52510918	+	714.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	48193.0	NM_146123	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45023898-1	chr7	45023398	45024398	+	714.666687	f0_c57.idr	Intergenic	B2_Mm1t|SINE|B2	4301.0	NM_001360133	20130.0	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	2.0	0.0	4.0	0.5	4.5	0.0
Merged-chr9-56324780-3	chr9	56324268	56325268	+	714.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172924, intron 2 of 6)	intron (NM_172924, intron 2 of 6)	93282.0	NM_172924	244895.0	Mm.490331	NM_172924	ENSMUSG00000074305	Peak1	1110049L02Rik|9530046P14|AA690169|BE132841|C230081A13Rik|SGK269|mKIAA2002	pseudopodium-enriched atypical kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127122912-2	chr10	127122412	127123412	+	714.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1752.0	NM_001171026	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75176008-2	chr11	75175508	75176508	+	714.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027136)	TTS (NM_027136)	2326.0	NR_029546	387150.0		NR_029546	ENSMUSG00000065537	Mir132	Mirn132|mir-132|mmu-mir-132	microRNA 132	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165316285-2	chr2	165315785	165316785	+	714.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302754)	promoter-TSS (NM_001302754)	66.0	NM_001302754	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156633312-2	chr1	156632812	156633812	+	714.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 7 of 12)	intron (NM_001136104, intron 7 of 12)	41027.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	0.0	5.0	1.0	0.0	0.0	0.0
Merged-chr10-71401534-2	chr10	71401034	71402034	+	714.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53771.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-90418158-3	chr11	90417657	90418657	+	714.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-27240.0	NM_172563	217082.0	Mm.158903	NM_172563	ENSMUSG00000003949	Hlf	E230015K02Rik	hepatic leukemia factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-131802226-3	chr7	131801718	131802718	+	714.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-164242.0	NM_173410	233919.0	Mm.208740	NM_173410	ENSMUSG00000040125	Gpr26	9630036A11Rik|A730021D22	G protein-coupled receptor 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-46825182-3	chr7	46824666	46825666	+	714.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-20638.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74245044-4	chr1	74244485	74245485	+	714.575012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 2 of 10)	B3A|SINE|B2	8468.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-12051324-3	chr2	12050819	12051819	+	714.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-249927.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110765554-2	chr12	110765054	110766054	+	714.541626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347428, intron 1 of 2)	intron (NM_001347428, intron 1 of 2)	27622.0	NM_001347428	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123713087-2	chr5	123712607	123713607	+	714.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027494, intron 5 of 13)	B3A|SINE|B2	7937.0	NM_027494	70650.0	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	3.0	4.5	6.5	5.5	5.5	3.5
Merged-chr7-55909229-2	chr7	55908730	55909730	+	714.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 22 of 30)	L1MC4a|LINE|L1	53263.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	55.5	108.0	48.0	46.0	118.0	82.0
Merged-chr5-38516991-2	chr5	38516491	38517491	+	714.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14839.0	NM_145559	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	1.0	0.0	0.5	0.0	0.0	2.0
Merged-chr11-70253824-2	chr11	70253324	70254324	+	714.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007440, intron 2 of 13)	intron (NM_007440, intron 2 of 13)	1546.0	NM_001331118	11684.0	Mm.12286	NM_007440	ENSMUSG00000000320	Alox12	9930022G08Rik|Alox12p|P-12LO	arachidonate 12-lipoxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56548262-2	chr17	56547762	56548762	+	714.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6125.0	NR_130128	100504425.0	Mm.384143	NR_130128	ENSMUSG00000110218	Gm20219	Tincr	predicted gene, 20219	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34727103-2	chr11	34726603	34727603	+	714.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 6 of 51)	intron (NM_033374, intron 6 of 51)	56802.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130262412-2	chr5	130261912	130262912	+	714.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153350, intron 2 of 15)	intron (NR_153350, intron 2 of 15)	5375.0	NM_001015876	100929.0	Mm.271296	NM_178897	ENSMUSG00000056310	Tyw1	AW125391|Rsafd1	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-124145819-2	chr9	124145319	124146319	+	714.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	24276.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-83271830-3	chr4	83271296	83272296	+	714.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 2 of 19)	B1F2|SINE|Alu	52393.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0.0	3.5	9.0	15.5	8.0	23.5
Merged-chr11-95855683-2	chr11	95855183	95856183	+	714.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-3134.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	0.0	0.0	0.0	0.5	0.0	1.5
Merged-chr7-16948279-2	chr7	16947779	16948779	+	714.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001099636, exon 1 of 1)	3' UTR (NM_001099636, exon 1 of 1)	3597.0	NM_001099636	434128.0	Mm.483018	NM_001099636	ENSMUSG00000070802	Pnmal2	EG434128	PNMA-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121369257-2	chr14	121368670	121369670	+	714.5	f0_balb.idr|f1_balb.idr	intron (NM_145465, intron 1 of 10)	intron (NM_145465, intron 1 of 10)	10060.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0.0	13.0	3.0	2.5	1.0	5.0
Merged-chr18-5592108-2	chr18	5591608	5592608	+	714.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360981)	promoter-TSS (NM_001360981)	248.0	NM_011546	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17808524-2	chr16	17808024	17809024	+	714.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153790)	TTS (NM_153790)	11242.0	NM_153790	224024.0	Mm.194950	NM_153790	ENSMUSG00000012017	Scarf2	NSR1|SREC-II|SRECRP-1|Scatf1|Srec2|SrecII	scavenger receptor class F, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82565415-2	chr18	82564915	82565915	+	714.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025251, intron 2 of 6)	intron (NM_001025251, intron 2 of 6)	10907.0	NM_001025254	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88146771-2	chr3	88146271	88147271	+	714.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	4399.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60628523-2	chr13	60628023	60629023	+	714.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	26312.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80521883-2	chr15	80521383	80522383	+	714.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163189, intron 2 of 5)	intron (NM_001163189, intron 2 of 5)	38587.0	NM_001163189	383075.0	Mm.297626	NM_001163189	ENSMUSG00000050439	Enthd1	Gm1242|Gm86	ENTH domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51813428-2	chr11	51812928	51813928	+	714.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_199299)	TTS (NM_199299)	44053.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-33261094-2	chr4	33260594	33261594	+	714.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-12307.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	1.5	1.0	0.5	0.0	6.0	1.0
Merged-chr17-31563184-2	chr17	31562684	31563684	+	714.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-1589.0	NR_027493	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44700635-2	chr9	44700135	44701135	+	714.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153537, intron 13 of 21)	intron (NM_153537, intron 13 of 21)	27402.0	NM_001277847	58866.0	Mm.45380	NM_021481	ENSMUSG00000032098	Treh	2210412M19Rik	trehalase (brush-border membrane glycoprotein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6341173-2	chr4	6340594	6341594	+	714.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-24586.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	3.5	2.0	1.0	13.0	7.0	1.5
Merged-chr3-16182397-2	chr3	16181897	16182897	+	714.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145919)	promoter-TSS (NM_001145919)	-768.0	NM_001358043	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-88996504-2	chr11	88996004	88997004	+	714.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2899.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	1.0	2.5	9.0	6.5	8.0	9.0
Merged-chr2-145675396-3	chr2	145674991	145675991	+	714.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25704.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98859328-2	chr15	98858828	98859828	+	714.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033276, intron 15 of 54)	RSINE1|SINE|B4	11877.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-46347577-4	chr5	46347090	46348090	+	714.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-415181.0	NR_110478	78106.0	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA	1.5	3.0	4.0	1.0	4.5	1.5
Merged-chr6-91676828-2	chr6	91676328	91677328	+	714.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7239.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.0	3.5	1.0	5.0	0.0	0.0
Merged-chr11-87408607-2	chr11	87408107	87409107	+	714.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031386, intron 1 of 30)	L1MB3|LINE|L1	3542.0	NM_031386	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12025517-2	chr19	12025017	12026017	+	714.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	11223.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173735830-2	chr2	173735330	173736330	+	714.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1741.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20748843-2	chr13	20748343	20749343	+	714.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45270.0	NM_001281854	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.0	1.0	2.0	0.0	0.0	1.0
Merged-chr9-100443557-2	chr9	100443057	100444057	+	714.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42916.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	0.0	1.0	0.0	0.0	2.5	0.0
Merged-chr12-55600315-2	chr12	55599815	55600815	+	714.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_020287, exon 1 of 1)	exon (NM_020287, exon 1 of 1)	1398.0	NM_020287	56856.0	Mm.114886	NM_020287	ENSMUSG00000045440	Insm2	Mlt1	insulinoma-associated 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69582025-2	chr11	69581525	69582525	+	714.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127233, intron 1 of 10)	intron (NM_001127233, intron 1 of 10)	1666.0	NM_001127233	22059.0	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171101410-2	chr1	171100936	171101936	+	714.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-20225.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	7.0	11.5	3.5	13.0	16.0	10.0
Merged-chr8-75415302-2	chr8	75414802	75415802	+	714.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-33392.0	NM_027944	71831.0	Mm.443238	NM_027944	ENSMUSG00000031620	Iqcm	1700007B14Rik	IQ motif containing M	protein-coding	2.0	0.0	0.0	1.5	0.0	0.0
Merged-chr11-86748708-2	chr11	86748208	86749208	+	714.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	8859.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99196474-2	chr9	99195974	99196974	+	714.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	40765.0	NM_001244762	623459.0	Mm.260891	NM_001244762	ENSMUSG00000096316	Faiml	EG623459|Gm6432	Fas apoptotic inhibitory molecule like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-50912144-2	chr5	50911644	50912644	+	714.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR10B2|LTR|ERVK	641777.0	NR_027710	19017.0	Mm.259072	NM_008904	ENSMUSG00000029167	Ppargc1a	A830037N07Rik|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	protein-coding	0.5	0.0	1.5	0.0	1.0	0.0
Merged-chr15-73633873-2	chr15	73633373	73634373	+	714.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9129.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-64875988-3	chr12	64875493	64876493	+	714.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41918.0	NM_001025605	217648.0	Mm.341586	NM_001025605	ENSMUSG00000047227	Gm527	-	predicted gene 527	protein-coding	1.5	0.0	2.5	0.0	0.0	0.0
Merged-chr19-32949517-4	chr19	32949049	32950049	+	714.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	191972.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9879500-2	chr13	9879000	9880000	+	714.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 4 of 4)	intron (NM_033269, intron 4 of 4)	-114179.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180580506-1	chr2	180580006	180581006	+	714.400024	f0_balb.idr	promoter-TSS (NM_028479)	promoter-TSS (NM_028479)	-716.0	NM_028479	73247.0	Mm.426558	NM_028479	ENSMUSG00000027569	Mrgbp	1600027N09Rik|AW060503|C80444	MRG/MORF4L binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58238034-3	chr15	58237551	58238551	+	714.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23159.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-82875411-2	chr8	82874900	82875900	+	714.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 1 of 6)	intron (NM_177378, intron 1 of 6)	12044.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	48.5	41.5	17.5	1.0	0.5	0.5
Merged-chr11-22287921-2	chr11	22287421	22288421	+	714.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1126.0	NM_001252515	216565.0	Mm.491265	NM_153078	ENSMUSG00000042302	Ehbp1	AF424697|Flj21950|NACSIN	EH domain binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr4-101689821-3	chr4	101689324	101690324	+	714.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27583.0	NM_001122899	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	0.0	0.0	0.0	0.0	5.0	0.0
Merged-chr2-126030350-3	chr2	126029870	126030870	+	714.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029455, intron 11 of 16)	intron (NM_029455, intron 11 of 16)	-4288.0	NM_008008	14178.0	Mm.330557	NM_008008	ENSMUSG00000027208	Fgf7	Kgf	fibroblast growth factor 7	protein-coding	0.0	3.0	1.0	2.0	9.5	2.5
Merged-chr2-48827565-3	chr2	48827063	48828063	+	714.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007396, intron 1 of 10)	intron (NM_007396, intron 1 of 10)	13454.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145822328-3	chr6	145821823	145822823	+	714.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	13940.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-115715591-3	chr3	115715195	115716195	+	714.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007901)	promoter-TSS (NM_007901)	-640.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.0	4.0	3.0	4.0	10.0	2.5
Merged-chr13-20207259-4	chr13	20206751	20207751	+	714.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 2 of 21)	intron (NM_080288, intron 2 of 21)	116744.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.0	0.0	0.0	2.0	0.0	0.0
Merged-chr15-98566315-2	chr15	98565815	98566815	+	714.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_009833, intron 1 of 8)	intron (NM_009833, intron 1 of 8)	-1009.0	NR_028442	100048895.0	Mm.471074	NR_028442		9330020H09Rik	-	RIKEN cDNA 9330020H09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-25036966-3	chr19	25036458	25037458	+	714.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 1 of 47)	intron (NM_028785, intron 1 of 47)	37429.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	7.5	17.5	13.0	1.5	11.5	1.0
Merged-chr6-72361490-2	chr6	72360990	72361990	+	714.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001331167, exon 3 of 6)	exon (NM_001331167, exon 3 of 6)	942.0	NM_001331171	66510.0	Mm.170023	NM_025607	ENSMUSG00000055850	Rnf181	1700047F16Rik|2500002L14Rik|6230415N01Rik|C77350	ring finger protein 181	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-3978421-2	chr15	3977921	3978921	+	714.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_134099, intron 1 of 6)	B2_Mm2|SINE|B2	1152.0	NM_134099	106052.0	Mm.234191	NM_134099	ENSMUSG00000022184	Fbxo4	1700096C12Rik|AI851261|AW494535|Fbx4	F-box protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73643198-4	chr15	73642717	73643717	+	714.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18473.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91455134-2	chr1	91454629	91455629	+	714.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011066, intron 1 of 22)	intron (NM_011066, intron 1 of 22)	4199.0	NM_011066	18627.0	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	2.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-100998347-4	chr4	100997840	100998840	+	714.233337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198037, intron 26 of 26)	intron (NM_198037, intron 26 of 26)	-70698.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	3.5	5.0	9.0	8.5	6.0	8.0
Merged-chr2-130411950-4	chr2	130411457	130412457	+	714.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5435.0	NM_025753	66766.0	Mm.174834	NM_025753	ENSMUSG00000049692	Tmem239	4933425O20Rik	transmembrane 239	protein-coding	0.0	2.5	2.0	0.5	1.5	2.0
Merged-chr2-83754459-3	chr2	83753950	83754950	+	714.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008402, intron 3 of 29)	MTD|LTR|ERVL-MaLR	30053.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	2.0	9.5	5.5	1.5	5.5	5.5
Merged-chr10-23854020-3	chr10	23853479	23854479	+	714.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011979, intron 2 of 6)	intron (NM_011979, intron 2 of 6)	2517.0	NM_011979	26464.0	Mm.27334	NM_011979	ENSMUSG00000020010	Vnn3	-	vanin 3	protein-coding	1.0	7.5	22.5	4.5	2.5	0.0
Merged-chr11-70785262-2	chr11	70784762	70785762	+	714.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20815.0	NM_177565	193043.0	Mm.40966	NM_177565	ENSMUSG00000043602	Zfp3	AI854635|B230309J24|Fnp-1|Zfp-3	zinc finger protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70488604-3	chr8	70488079	70489079	+	714.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1221.0	NM_182991	67937.0	Mm.23002	NM_182991	ENSMUSG00000035964	Tmem59l	5330410G16Rik	transmembrane protein 59-like	protein-coding	0.0	0.0	2.0	0.0	0.0	6.0
Merged-chr5-17855548-2	chr5	17855048	17856048	+	714.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	IAPEz-int|LTR|ERVK	-5756.0	NM_001159556	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-99179675-2	chr14	99179175	99180175	+	714.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029320, intron 11 of 17)	PB1D10|SINE|Alu	-79905.0	NR_153390	72662.0	Mm.163339	NM_028315	ENSMUSG00000033166	Dis3	2810028N01Rik	DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8711020-2	chr19	8710520	8711520	+	714.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161413, intron 4 of 9)	intron (NM_001161413, intron 4 of 9)	2877.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-74289957-2	chr3	74289465	74290465	+	714.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-272688.0	NR_040450	100504692.0	Mm.394454	NR_040450	ENSMUSG00000104096	Gm20356	-	predicted gene, 20356	ncRNA	0.0	1.0	0.5	0.0	0.0	0.0
Merged-chr5-41766874-2	chr5	41766374	41767374	+	714.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2654.0	NM_007524	12020.0	Mm.2530	NM_007524	ENSMUSG00000049691	Nkx3-2	Bapx1|NKX3.2|Nkx-3.2	NK3 homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-13712196-3	chr3	13711698	13712698	+	714.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357034, intron 1 of 7)	CT-rich|Low_complexity|Low_complexity	-59333.0	NR_040598	75203.0	Mm.490940	NR_040598		4930539N22Rik	-	RIKEN cDNA 4930539N22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97645020-4	chr11	97644514	97645514	+	714.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-15298.0	NM_175332	103551.0	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22814924-3	chr9	22814425	22815425	+	714.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360259, intron 21 of 22)	intron (NM_001360259, intron 21 of 22)	339210.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94870511-3	chr11	94870021	94871021	+	714.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20928.0	NM_001205037	432591.0	Mm.370372	NM_001205037		Gm11544	-	predicted gene 11544	protein-coding	0.0	4.5	2.0	0.0	0.0	0.0
Merged-chr11-118059028-2	chr11	118058528	118059528	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167746, intron 55 of 80)	intron (NM_001167746, intron 55 of 80)	56758.0	NR_105898	102466768.0		NR_105898	ENSMUSG00000098958	Mir6933	Gm27856|mmu-mir-6933	microRNA 6933	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76991873-1	chr14	76991373	76992373	+	714.0	f1_balb.idr	Intergenic	Intergenic	44744.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	9.5	0.0	4.0	0.0	7.5	0.5
Merged-chr3-131275097-2	chr3	131274597	131275597	+	714.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-2996.0	NM_008212	15107.0	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85491941-2	chr12	85491441	85492441	+	714.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18051.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32401595-2	chr4	32401095	32402095	+	714.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15840.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-35598224-2	chr6	35597724	35598724	+	714.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-58336.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26470115-2	chr2	26469615	26470615	+	714.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105962)	promoter-TSS (NR_105962)	4.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119893850-2	chr9	119893350	119894350	+	714.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1045.0	NM_026236	67561.0	Mm.104789	NM_026236	ENSMUSG00000032512	Wdr48	8430408H12Rik|Uaf1|mKIAA1449	WD repeat domain 48	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124707719-2	chr6	124707219	124708219	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013536, intron 1 of 5)	B3A|SINE|B2	4459.0	NM_013536	14791.0	Mm.6390	NM_013536	ENSMUSG00000004268	Emg1	C2f|Grcc2f	EMG1 N1-specific pseudouridine methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70857707-2	chr17	70857207	70858207	+	714.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	2893.0	NR_035427	100316676.0		NR_035427	ENSMUSG00000080468	Mir1195	Mirn1195|mmu-mir-1195	microRNA 1195	ncRNA	0.0	11.5	0.5	0.0	0.0	0.0
Merged-chr13-115527686-1	chr13	115527186	115528186	+	714.0	f1_balb.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	-425722.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	0.0	3.0	4.0	0.5	0.0	0.0
Merged-chr13-15267153-2	chr13	15266653	15267653	+	714.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-196570.0	NM_008130	14634.0	Mm.5098	NM_008130	ENSMUSG00000021318	Gli3	AI854843|AU023367|Bph|GLI3-190|GLI3FL|Pdn|Xt|add	GLI-Kruppel family member GLI3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84403503-2	chr10	84403003	84404003	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 2 of 6)	intron (NM_001004363, intron 2 of 6)	36968.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-89026821-3	chr11	89026303	89027303	+	714.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	27400.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	73.0	128.0	85.0	26.5	53.0	50.0
Merged-chr3-89203440-2	chr3	89202940	89203940	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_122037, intron 2 of 11)	intron (NR_122037, intron 2 of 11)	515.0	NR_122037	14466.0	Mm.5031	NM_008094	ENSMUSG00000028048	Gba	GBA1|GC|GCase|GLUC|betaGC	glucosidase, beta, acid	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28171342-2	chr7	28170842	28171842	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007991, intron 1 of 8)	intron (NM_007991, intron 1 of 8)	1594.0	NM_007991	14113.0	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-99005424-2	chr13	99004924	99005924	+	714.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-20859.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100728136-2	chr15	100727636	100728636	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172451, intron 1 of 11)	intron (NM_172451, intron 1 of 11)	1240.0	NM_001161767	207839.0	Mm.22969	NM_172451	ENSMUSG00000037280	Galnt6	4632410F13|AW047994|GalNAc-T6	polypeptide N-acetylgalactosaminyltransferase 6	protein-coding	10.0	47.5	17.5	1.0	18.5	23.0
Merged-chr1-85766233-3	chr1	85765734	85766734	+	714.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9037.0	NR_108086	77762.0	Mm.434298	NR_108086	ENSMUSG00000100217	9930111H07Rik	-	RIKEN cDNA 9930111H07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-94936765-2	chr9	94936220	94937220	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 7 of 15)	intron (NM_177909, intron 7 of 15)	184891.0	NR_106116	102465763.0		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	0.0	4.0	0.0	0.0	0.5	1.0
Merged-chr18-60864509-2	chr18	60864010	60865010	+	714.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-15546.0	NM_001198984	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40521994-2	chr12	40521494	40522494	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	75941.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-89395568-1	chr7	89395068	89396068	+	714.0	f0_balb.idr	intron (NM_001360746, intron 1 of 14)	L1MA9|LINE|L1	8654.0	NM_001360746	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85622987-2	chr12	85622487	85623487	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 2 of 3)	intron (NM_001205053, intron 2 of 3)	22969.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-105033866-1	chr9	105033366	105034366	+	714.0	f0_c57.idr	3' UTR (NM_001357439, exon 16 of 16)	3' UTR (NM_001357439, exon 16 of 16)	-19402.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	31.0	33.5	50.0	64.0	160.0	93.0
Merged-chr14-47181656-2	chr14	47181156	47182156	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008102, intron 1 of 5)	intron (NM_008102, intron 1 of 5)	7757.0	NM_008102	14528.0	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTP-CH-I|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	4.5	4.5	0.0	5.0	3.0	0.5
Merged-chr5-103774882-2	chr5	103774382	103775382	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080798, intron 1 of 19)	intron (NM_001080798, intron 1 of 19)	20309.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105686864-2	chr8	105686364	105687364	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357333, intron 3 of 38)	intron (NM_001357333, intron 3 of 38)	590.0	NM_001357333	234695.0	Mm.471640	NM_001033320	ENSMUSG00000050357	Carmil2	CG1399-PB|D130029J02Rik|Gm585|Rltpr	capping protein regulator and myosin 1 linker 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-59207650-2	chr3	59207150	59208150	+	714.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028808)	TTS (NM_028808)	3232.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-114984847-1	chr13	114984347	114985347	+	714.0	f0_balb.idr	intron (NM_001033228, intron 18 of 28)	intron (NM_001033228, intron 18 of 28)	-52747.0	NM_008396	16398.0	Mm.5007	NM_008396	ENSMUSG00000015533	Itga2	CD49B|DX5|GPIa	integrin alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20649614-2	chr18	20649114	20650114	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155534, intron 1 of 2)	MTD|LTR|ERVL-MaLR	-15636.0	NM_013697	22139.0	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116558434-2	chr4	116557934	116558934	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029868, intron 1 of 11)	intron (NM_029868, intron 1 of 11)	707.0	NM_029868	77110.0	Mm.41715	NM_029868	ENSMUSG00000034042	Gpbp1l1	5330440M15Rik|BC002292	GC-rich promoter binding protein 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156426930-2	chr1	156426511	156427511	+	714.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6096.0	NM_001346967	77352.0	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	10.0	6.5	14.5	6.0	8.5	8.0
Merged-chr12-76473868-1	chr12	76473368	76474368	+	714.0	f0_balb.idr	Intergenic	Intergenic	29371.0	NR_028520	100041694.0	Mm.259350	NR_028520	ENSMUSG00000073000	Gm10451	-	predicted gene 10451	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-39656589-1	chr8	39656089	39657089	+	714.0	f0_balb.idr	Intergenic	Intergenic	-13911.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.0	7.0	0.0	2.0	10.0	7.0
Merged-chr17-6493185-1	chr17	6492685	6493685	+	714.0	f1_balb.idr	Intergenic	Intergenic	-42191.0	NR_033520	547127.0	Mm.297552	NM_001045538		Tmem181b-ps	Tmem181b	transmembrane protein 181B, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91192703-2	chr2	91192285	91193285	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355279, intron 2 of 9)	intron (NM_001355279, intron 2 of 9)	2250.0	NM_013839	22259.0	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	5.5	25.0	23.5	1.5	5.0	5.5
Merged-chr9-44138894-2	chr9	44138394	44139394	+	714.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_023061, exon 6 of 16)	exon (NM_023061, exon 6 of 16)	4236.0	NM_001359530	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101317623-2	chr15	101317123	101318123	+	714.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24411.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-112449775-3	chr2	112449274	112450274	+	714.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5251.0	NM_133749	73024.0	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138222280-3	chr5	138221839	138222839	+	714.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3565.0	NM_001013773	381680.0	Mm.156846	NM_001013773	ENSMUSG00000047592	Nxpe5	-	neurexophilin and PC-esterase domain family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16177525-1	chr7	16177025	16178025	+	714.0	f1_c57bl6.idr	exon (NM_001302472, exon 2 of 13)	exon (NM_001302472, exon 2 of 13)	2130.0	NR_102730	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr2-28640024-2	chr2	28639524	28640524	+	714.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1209.0	NM_001289575	64930.0	Mm.224354	NM_022887	ENSMUSG00000026812	Tsc1	-	tuberous sclerosis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-149303336-2	chr2	149302836	149303836	+	714.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12|LTR|ERVK	-101913.0	NM_021405	58214.0	Mm.117117	NM_021405	ENSMUSG00000033156	Cst10	DD72	cystatin 10 (chondrocytes)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153751161-2	chr1	153750661	153751661	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011882, intron 1 of 8)	ORR1A1|LTR|ERVL-MaLR	1735.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-30618114-2	chr6	30617614	30618614	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144537, intron 4 of 11)	intron (NM_144537, intron 4 of 11)	7104.0	NM_144537	74649.0	Mm.159276	NM_144537	ENSMUSG00000029788	Cpa5	4930430M09Rik	carboxypeptidase A5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-33897982-2	chr8	33897514	33898514	+	714.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_001042675, intron 1 of 6)	(CA)n|Simple_repeat|Simple_repeat	31849.0	NM_019733	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	7.0	5.0	7.5	3.0	1.5	3.5
Merged-chr6-147353344-1	chr6	147352844	147353844	+	714.0	f1_c57bl6.idr	Intergenic	ERVL-E-int|LTR|ERVL	-89331.0	NM_008970	19227.0	Mm.28440	NM_008970	ENSMUSG00000048776	Pthlh	PLP|PTH-like|Pthrp	parathyroid hormone-like peptide	protein-coding	0.0	4.5	3.0	3.0	6.0	0.5
Merged-chr6-63819946-2	chr6	63819446	63820446	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008167, intron 2 of 15)	intron (NM_008167, intron 2 of 15)	563089.0	NM_008167	14804.0	Mm.439651	NM_008167	ENSMUSG00000071424	Grid2	B230104L07Rik|GluD2|GluRdelta2|Lc|Lc<J>|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr	glutamate receptor, ionotropic, delta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102248573-2	chr15	102248073	102249073	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011244, intron 3 of 9)	intron (NM_011244, intron 3 of 9)	-2073.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-77081460-2	chr14	77080960	77081960	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310649, intron 3 of 3)	intron (NM_001310649, intron 3 of 3)	44688.0	NM_001310649	108811.0	Mm.102168	NM_175369	ENSMUSG00000034795	Ccdc122	4933415L06Rik	coiled-coil domain containing 122	protein-coding	19.5	4.5	4.0	0.5	12.0	14.0
Merged-chr9-65531646-2	chr9	65531146	65532146	+	714.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48441.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34398183-2	chr13	34397683	34398683	+	714.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53001.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-22722008-2	chr10	22721508	22722508	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011603, intron 1 of 6)	intron (NM_011603, intron 1 of 6)	7424.0	NR_106123	102465768.0		NR_106123	ENSMUSG00000098714	Mir7663	Gm28034|mmu-mir-7663	microRNA 7663	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-52234061-1	chr10	52233561	52234561	+	714.0	f0_balb.idr	intron (NM_001347444, intron 1 of 9)	CpG	442.0	NM_025705	66686.0	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4472245-2	chr7	4471745	4472745	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026146, intron 10 of 19)	intron (NM_026146, intron 10 of 19)	-1361.0	NR_028416	320749.0	Mm.396688	NR_028416		D630041G03Rik	-	RIKEN cDNA D630041G03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-6188444-2	chr7	6187944	6188944	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028316, intron 3 of 3)	intron (NM_028316, intron 3 of 3)	-8646.0	NM_178028	232836.0	Mm.246599	NM_178028	ENSMUSG00000034660	Galp	-	galanin-like peptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-45980281-2	chr11	45979781	45980781	+	714.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173384)	promoter-TSS (NM_173384)	-29.0	NM_173384	214105.0	Mm.66708	NM_173384	ENSMUSG00000040489	Sox30	-	SRY (sex determining region Y)-box 30	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr12-37287866-2	chr12	37287366	37288366	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178767, intron 3 of 12)	ORR1E|LTR|ERVL-MaLR	46227.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	0.0	0.0	4.0	0.0	10.0	0.0
Merged-chr10-130229813-3	chr10	130229311	130230311	+	714.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-18683.0	NM_146300	258297.0	Mm.377419	NM_146300	ENSMUSG00000045559	Olfr827	MOR210-5	olfactory receptor 827	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58392191-2	chr1	58391691	58392691	+	714.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025824)	promoter-TSS (NM_025824)	-945.0	NM_025824	66882.0	Mm.21848	NM_025824	ENSMUSG00000051223	Bzw1	1200015E15Rik|mKIAA0005	basic leucine zipper and W2 domains 1	protein-coding	0.0	7.5	6.0	0.0	11.0	5.0
Merged-chr11-82535895-2	chr11	82535395	82536395	+	714.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97458.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-73001078-2	chr9	73000578	73001578	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359295, intron 4 of 9)	B1_Mur2|SINE|Alu	15574.0	NM_001286544	72278.0	Mm.268475	NM_028181	ENSMUSG00000034563	Ccpg1	1700030B06Rik|1810073J13Rik|9430028F23Rik|AI426686|AI875170|CPR8|D9Ertd392e	cell cycle progression 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145906069-3	chr2	145905570	145906570	+	713.916687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026425, intron 1 of 5)	B2_Mm1t|SINE|B2	2829.0	NM_001141965	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64426409-2	chr13	64425927	64426927	+	713.916687	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-6126.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	1.0	1.5	4.5	1.5	1.5	8.0
Merged-chr14-122302979-2	chr14	122302476	122303476	+	713.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_029556, intron 1 of 7)	intron (NM_029556, intron 1 of 7)	-69338.0	NR_015532	68245.0	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27685924-4	chr7	27685423	27686423	+	713.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198417, intron 1 of 5)	intron (NM_198417, intron 1 of 5)	-3417.0	NM_001112731	112415.0	Mm.145362	NM_198417	ENSMUSG00000057093	Zfp607b	C030039L03Rik	zinc finger protein 607B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-5805012-2	chr10	5804512	5805512	+	713.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025995, intron 1 of 4)	CpG	453.0	NM_025995	67141.0	Mm.197520	NM_025995	ENSMUSG00000019773	Fbxo5	2510044I10Rik|C85305|Emi1|Fbxo31	F-box protein 5	protein-coding	0.0	0.0	1.0	0.0	1.5	2.5
Merged-chr4-108619406-2	chr4	108618906	108619906	+	713.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177045)	promoter-TSS (NM_177045)	-550.0	NM_177045	319965.0	Mm.151129	NM_177045	ENSMUSG00000028582	Cc2d1b	A830039B04Rik|Freud2	coiled-coil and C2 domain containing 1B	protein-coding	0.0	3.0	2.5	0.0	0.0	0.5
Merged-chr1-189868253-2	chr1	189867753	189868753	+	713.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008976, intron 18 of 18)	intron (NM_008976, intron 18 of 18)	54038.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-23077049-2	chr10	23076549	23077549	+	713.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-256921.0	NM_011545	21412.0	Mm.16497	NM_011545	ENSMUSG00000045680	Tcf21	Pod-1|Pod1|bHLHa23|capsulin|epc|epicardin	transcription factor 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40326607-2	chr9	40326107	40327107	+	713.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	-5284.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115633511-2	chr5	115633011	115634011	+	713.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_198163, intron 1 of 5)	intron (NM_198163, intron 1 of 5)	1524.0	NM_198163	77407.0	Mm.27553	NM_198163	ENSMUSG00000029518	Rab35	9530019H02Rik|AU040256|H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87454205-2	chr16	87453705	87454705	+	713.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024258)	promoter-TSS (NM_024258)	-780.0	NM_024258	74112.0	Mm.152941	NM_024258	ENSMUSG00000025616	Usp16	1200004E02Rik|2810483I07Rik|6330514E22Rik|UBPM	ubiquitin specific peptidase 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-74980790-3	chr8	74980241	74981241	+	713.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1A|DNA|hAT-Tip100	-12909.0	NM_001316753	70823.0	Mm.261739	NM_178017	ENSMUSG00000034518	Hmgxb4	4733401K04Rik|AI316803|Hmgb2l1	HMG box domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89482494-2	chr3	89481994	89482994	+	713.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22923.0	NM_027348	68603.0	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86945296-3	chr12	86944786	86945786	+	713.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1755.0	NM_001289431	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-63931343-3	chr7	63930850	63931850	+	713.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	7565.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	17.0	33.0	18.5	14.5	35.0	10.5
Merged-chr10-127479418-3	chr10	127478898	127479898	+	713.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359246, intron 13 of 23)	B3|SINE|B2	-22288.0	NM_001359751	237611.0	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136211870-2	chr5	136211370	136212370	+	713.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12916.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101686553-2	chr13	101686053	101687053	+	713.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024955, intron 8 of 9)	intron (NM_001024955, intron 8 of 9)	6077.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95508375-2	chr9	95507875	95508875	+	713.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357977, intron 1 of 25)	RMER15|LTR|ERVL	3621.0	NM_001357975	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-148807174-2	chr3	148806674	148807674	+	713.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	147461.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-49064439-2	chr14	49063939	49064939	+	713.6999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_207214, intron 1 of 17)	intron (NM_207214, intron 1 of 17)	-2110.0	NM_001360070	74385.0	Mm.379235	NM_144535	ENSMUSG00000036291	Ap5m1	4932432K03Rik|Mu5|Mudeng	adaptor-related protein complex 5, mu 1 subunit	protein-coding	13.0	4.5	6.5	2.5	12.5	5.5
Merged-chr14-103479581-3	chr14	103479089	103480089	+	713.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33752.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84442577-3	chr18	84442080	84443080	+	713.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 3 of 8)	intron (NM_001033341, intron 3 of 8)	146924.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	8.5	0.0	0.0	9.0	0.0	0.0
Merged-chr5-105702593-2	chr5	105702093	105703093	+	713.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	PB1D7|SINE|Alu	1783.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.0	0.5	0.0	0.0	0.5	0.0
Merged-chr11-88205113-3	chr11	88204557	88205557	+	713.633362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291271, intron 1 of 4)	intron (NM_001291271, intron 1 of 4)	669.0	NM_001291271	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	40.5	145.5	105.0	54.5	130.0	128.0
Merged-chr13-75844424-4	chr13	75843942	75844942	+	713.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053108, intron 1 of 2)	intron (NM_053108, intron 1 of 2)	4556.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	7.5	24.5	19.0	7.5	36.5	33.0
Merged-chr15-78601448-2	chr15	78600957	78601957	+	713.56665	f1_balb.idr|f1_c57bl6.idr	intron (NM_028195, intron 1 of 12)	intron (NM_028195, intron 1 of 12)	4410.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	15.5	16.5	19.0	10.5	16.0	34.0
Merged-chr4-102794590-2	chr4	102794090	102795090	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144906, intron 1 of 23)	intron (NM_144906, intron 1 of 23)	34455.0	NM_001285859	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121123872-2	chr5	121123372	121124372	+	713.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67525.0	NM_001109992	19247.0	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133175302-2	chr4	133174802	133175802	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	B1_Mus2|SINE|Alu	-20353.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	30.5	81.0	59.0	14.5	75.5	42.5
Merged-chr5-114695928-2	chr5	114695428	114696428	+	713.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4993.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	0.0	3.5	0.0	1.5	1.5	0.0
Merged-chr9-120060196-2	chr9	120059696	120060696	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009987, intron 1 of 1)	B1_Mus1|SINE|Alu	8100.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	8.5	10.0	7.5	0.5	13.5	9.5
Merged-chr10-70199212-2	chr10	70198712	70199712	+	713.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-5452.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107314602-2	chr11	107314102	107315102	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	ID_B1|SINE|B4	-125221.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-21245877-2	chr2	21245377	21246377	+	713.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	40153.0	NM_177588	208967.0	Mm.268841	NM_177588	ENSMUSG00000048550	Thnsl1	AW413632	threonine synthase-like 1 (bacterial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10913301-2	chr17	10912801	10913801	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317726, intron 1 of 6)	Lx7|LINE|L1	72942.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126668712-2	chr7	126668212	126669212	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029339, intron 4 of 9)	ORR1E|LTR|ERVL-MaLR	7706.0	NM_133670	20887.0	Mm.368982	NM_133670	ENSMUSG00000030711	Sult1a1	AI266890|PST|ST1A1|ST1A4|Stp|Stp1|mSTp1	sulfotransferase family 1A, phenol-preferring, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128851860-2	chr6	128851363	128852363	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001254946, intron 2 of 2)	intron (NM_001254946, intron 2 of 2)	-25548.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	8.0	11.0	6.0	13.0	23.0	13.0
Merged-chr17-45560206-2	chr17	45559706	45560706	+	713.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001304956, exon 4 of 6)	exon (NM_001304956, exon 4 of 6)	-3730.0	NM_001357105	73836.0	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	0.0	5.5	0.5	2.5	5.0	0.0
Merged-chr10-111368389-1	chr10	111367889	111368889	+	713.5	f0_balb.idr	Intergenic	LTR48|LTR|ERV1	69710.0	NM_027914	71769.0	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29040500-2	chr7	29039978	29040978	+	713.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009109, exon 87 of 106)	exon (NM_009109, exon 87 of 106)	43216.0	NR_035489	100316710.0		NR_035489	ENSMUSG00000089219	Mir1963	mir-1963|mmu-mir-1963	microRNA 1963	ncRNA	0.5	2.5	0.0	3.0	8.5	6.0
Merged-chr18-7932956-2	chr18	7932481	7933481	+	713.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63268.0	NM_001360956	225131.0	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr9-96706575-2	chr9	96706075	96707075	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359959, intron 2 of 2)	intron (NM_001359959, intron 2 of 2)	12870.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99452529-2	chr7	99452017	99453017	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_201352, intron 11 of 17)	intron (NM_201352, intron 11 of 17)	-13487.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	0.0	0.0	0.0	2.0	0.0	0.0
Merged-chr11-3962069-2	chr11	3961569	3962569	+	713.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1906.0	NM_022889	64934.0	Mm.28659	NM_022889	ENSMUSG00000020430	Pes1	-	pescadillo ribosomal biogenesis factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128545021-2	chr10	128544521	128545521	+	713.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_134003, exon 3 of 3)	exon (NM_134003, exon 3 of 3)	2723.0	NM_134003	103284.0	Mm.68289	NM_134003	ENSMUSG00000039810	Zc3h10	AI790326	zinc finger CCCH type containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-105451905-2	chr11	105451405	105452405	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039242, intron 2 of 5)	intron (NM_001039242, intron 2 of 5)	4830.0	NM_172568	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-51219059-2	chr17	51218559	51219559	+	713.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-39707.0	NM_001285991	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191067868-2	chr1	191067368	191068368	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198654, intron 2 of 5)	intron (NM_198654, intron 2 of 5)	4847.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	8.0	4.0	22.0	12.5	9.5	10.0
Merged-chr4-108578413-2	chr4	108577913	108578913	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172697, intron 1 of 9)	B1_Mm|SINE|Alu	923.0	NM_172697	230596.0	Mm.157534	NM_172697	ENSMUSG00000063800	Prpf38a	2410002M20Rik	PRP38 pre-mRNA processing factor 38 (yeast) domain containing A	protein-coding	14.0	53.5	15.5	7.0	44.0	16.5
Merged-chr11-30291281-1	chr11	30290781	30291781	+	713.5	f0_balb.idr	Intergenic	Intergenic	-71509.0	NM_175836	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.0	2.0	8.0	1.0	2.0	11.5
Merged-chr6-120496432-2	chr6	120495932	120496932	+	713.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2625.0	NM_033567	94047.0	Mm.23088	NM_033567	ENSMUSG00000094626	Tmem121b	AW048664|Cecr6	transmembrane protein 121B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-7974224-2	chr14	7973724	7974724	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007870, intron 5 of 7)	intron (NM_007870, intron 5 of 7)	19958.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36464966-2	chr16	36464466	36465466	+	713.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9574.0	NM_025288	20863.0	Mm.136573	NM_025288	ENSMUSG00000054905	Stfa3	Stf3	stefin A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27179334-2	chr3	27178834	27179834	+	713.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3670.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121605186-2	chr5	121604699	121605699	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178799, intron 7 of 10)	intron (NM_178799, intron 7 of 10)	-11375.0	NM_001308450	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101393604-2	chr7	101393104	101394104	+	713.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198096)	promoter-TSS (NM_198096)	-784.0	NM_198096	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89164343-2	chr3	89163843	89164843	+	713.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007712)	promoter-TSS (NM_007712)	-452.0	NM_001310016	105943584.0		NM_001310016		Gm45927	Clk2-scamp3|TU52	predicted gene, 45927	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120358904-2	chr11	120358404	120359404	+	713.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2630.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122360603-2	chr2	122360105	122361105	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013829, intron 1 of 5)	intron (NM_001013829, intron 1 of 5)	8313.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr9-43034492-4	chr9	43033992	43034992	+	713.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359232, intron 4 of 40)	intron (NM_001359232, intron 4 of 40)	71226.0	NM_001359232	69632.0	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	2.5	0.0	3.5	5.0	0.0	6.5
Merged-chr1-93208150-2	chr1	93207650	93208650	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310428, intron 20 of 31)	intron (NM_001310428, intron 20 of 31)	-27747.0	NM_172463	208777.0	Mm.271897	NM_172463	ENSMUSG00000047793	Sned1	6720455I24Rik|AI197264|AI642697|D430044C15Rik|SST3|Snep	sushi, nidogen and EGF-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118768148-2	chr9	118767648	118768648	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	56456.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	10.0	0.0	2.5	12.5	1.5	5.5
Merged-chr18-5099605-2	chr18	5099105	5100105	+	713.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_153153, exon 26 of 35)	exon (NM_153153, exon 26 of 35)	53016.0	NM_001347449	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75881729-2	chr7	75881229	75882229	+	713.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33391.0	NM_029652	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31928540-3	chr16	31928043	31929043	+	713.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-5308.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117083518-2	chr10	117083018	117084018	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177798, intron 5 of 9)	B3A|SINE|B2	-19666.0	NM_007636	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116767879-2	chr6	116767379	116768379	+	713.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51121.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20724181-2	chr14	20723681	20724681	+	713.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001252081)	TTS (NM_001252081)	10381.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-28068833-2	chr5	28068333	28069333	+	713.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-2579.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65666310-3	chr9	65665816	65666816	+	713.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-10232.0	NM_010952	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	0.0	2.0	3.0	0.0	0.0	1.0
Merged-chr7-79937057-2	chr7	79936557	79937557	+	713.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1793.0	NM_027420	70420.0	Mm.34266	NM_027420	ENSMUSG00000039043	Arpin	2610034B18Rik	actin-related protein 2/3 complex inhibitor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-90491855-2	chr11	90491355	90492355	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011505, intron 17 of 17)	intron (NM_011505, intron 17 of 17)	-100938.0	NM_172563	217082.0	Mm.158903	NM_172563	ENSMUSG00000003949	Hlf	E230015K02Rik	hepatic leukemia factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34441910-1	chr18	34441410	34442410	+	713.5	f1_balb.idr	TTS (NM_001163004)	TTS (NM_001163004)	32487.0	NM_016927	53871.0	Mm.445792	NM_016927	ENSMUSG00000014503	Pkd2l2	TRPP5	polycystic kidney disease 2-like 2	protein-coding	12.5	1.5	2.5	13.0	0.0	2.5
Merged-chr2-29253141-2	chr2	29252641	29253641	+	713.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029460)	promoter-TSS (NR_029460)	-148.0	NR_029460	76220.0	Mm.330108	NR_029460	ENSMUSG00000079499	6530402F18Rik	mKIAA1857	RIKEN cDNA 6530402F18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83977021-2	chr8	83976521	83977521	+	713.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001277898, exon 1 of 10)	5' UTR (NM_001277898, exon 1 of 10)	138.0	NM_001277898	18747.0	Mm.19111	NM_008854	ENSMUSG00000005469	Prkaca	PKCD|Pkaca	protein kinase, cAMP dependent, catalytic, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-59207385-2	chr5	59206885	59207885	+	713.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-754387.0	NR_046190	78163.0	Mm.243828	NR_046190	ENSMUSG00000105234	4930459L07Rik	-	RIKEN cDNA 4930459L07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94038473-2	chr16	94037957	94038957	+	713.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29620.0	NM_019500	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12440645-2	chr18	12440151	12441151	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010680, intron 13 of 74)	intron (NM_010680, intron 13 of 74)	-63548.0	NM_001347461	16774.0	Mm.42012	NM_010680	ENSMUSG00000024421	Lama3	Lama3B|[a]3B	laminin, alpha 3	protein-coding	3.0	0.0	0.0	3.5	7.5	1.0
Merged-chr2-153196598-2	chr2	153196098	153197098	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 12 of 17)	B1_Mus2|SINE|Alu	28843.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86469869-2	chr6	86469369	86470369	+	713.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_131125)	TTS (NR_131125)	10961.0	NR_131125	320486.0	Mm.391625	NR_131125	ENSMUSG00000085589	A430078I02Rik	T25621	RIKEN cDNA A430078I02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20680399-2	chr18	20679899	20680899	+	713.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-15139.0	NR_155534	102633478.0		NR_155534	ENSMUSG00000085595	Gm16090	-	predicted gene 16090	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115470776-2	chr11	115470276	115471276	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359606, intron 3 of 3)	B2_Mm1t|SINE|B2	-4891.0	NM_177778	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-83040952-2	chr13	83040452	83041452	+	713.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	-342619.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr16-57222235-2	chr16	57221735	57222735	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 1 of 17)	L1MB7|LINE|L1	9231.0	NM_026254	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr9-107722493-2	chr9	107721993	107722993	+	713.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12018.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	0.0	0.0	1.5	0.5	0.0	0.5
Merged-chr11-98355927-3	chr11	98355432	98356432	+	713.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313970, intron 5 of 6)	intron (NM_001313970, intron 5 of 6)	2351.0	NR_045477	69338.0	Mm.398308	NR_045477	ENSMUSG00000085944	1700003D09Rik	-	RIKEN cDNA 1700003D09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54019671-3	chr18	54019174	54020174	+	713.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	157561.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-23116432-4	chr19	23115926	23116926	+	713.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-24800.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	1.0	0.0	0.5	0.0	0.0	0.5
Merged-chr14-122019403-4	chr14	122018917	122019917	+	713.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 8 of 8)	intron (NM_026861, intron 8 of 8)	-15257.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	1.5	5.0	1.5	4.5	0.5	3.0
Merged-chr7-114190914-4	chr7	114190391	114191391	+	713.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63789.0	NM_033370	70349.0	Mm.277024	NM_033370	ENSMUSG00000030754	Copb1	2610019B04Rik	coatomer protein complex, subunit beta 1	protein-coding	2.5	1.5	12.5	11.0	8.0	4.5
Merged-chr15-80706835-3	chr15	80706335	80707335	+	713.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4478.0	NM_144812	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70145235-3	chr12	70144720	70145720	+	713.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8951.0	NM_001195033	100504285.0	Mm.291105	NM_001195033	ENSMUSG00000090121	Abhd12b	Gm804	abhydrolase domain containing 12B	protein-coding	0.0	2.5	0.0	0.0	1.5	0.0
Merged-chr14-103717690-3	chr14	103717188	103718188	+	713.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18256.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83786205-2	chr17	83785705	83786705	+	713.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 11 of 16)	intron (NM_054082, intron 11 of 16)	60585.0	NM_025325	107766.0	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21999779-3	chr11	21999266	22000266	+	713.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011023, intron 2 of 4)	intron (NM_011023, intron 2 of 4)	1885.0	NM_011023	18423.0	Mm.129663	NM_011023	ENSMUSG00000005917	Otx1	A730044F23Rik|jv	orthodenticle homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71104855-3	chr2	71104359	71105359	+	713.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13195.0	NM_028593	73649.0	Mm.45435	NM_028593	ENSMUSG00000027015	Cybrd1	2210407P13Rik|Dcytb	cytochrome b reductase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170973166-3	chr1	170972681	170973681	+	713.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077189, intron 1 of 7)	intron (NM_001077189, intron 1 of 7)	2890.0	NM_010187	14130.0	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49271511-3	chr11	49270970	49271970	+	713.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8680.0	NM_146471	258463.0	Mm.377517	NM_146471	ENSMUSG00000059864	Olfr1393	MOR256-24	olfactory receptor 1393	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95008393-3	chr4	95007897	95008897	+	713.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29297.0	NM_177239	320713.0	Mm.208868	NM_177239	ENSMUSG00000062627	Mysm1	C130067A03Rik|C530050H10Rik	myb-like, SWIRM and MPN domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76780776-1	chr14	76780276	76781276	+	713.333313	f0_c57.idr	Intergenic	Intergenic	20645.0	NR_153763	73883.0	Mm.489041	NR_153763		4930431P22Rik	-	RIKEN cDNA 4930431P22 gene	ncRNA	4.0	10.5	9.0	7.0	0.0	1.5
Merged-chr13-91372129-3	chr13	91371555	91372555	+	713.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045161, intron 2 of 2)	intron (NR_045161, intron 2 of 2)	16030.0	NR_045161	320297.0	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107762479-2	chr13	107761979	107762979	+	713.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	75082.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88832875-2	chr6	88832375	88833375	+	713.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	9060.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43269130-4	chr13	43268603	43269603	+	713.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033399, intron 1 of 1)	intron (NM_001033399, intron 1 of 1)	35069.0	NM_001033399	328232.0	Mm.441399	NM_001033399	ENSMUSG00000051335	Gfod1	9630032O13|AI850995	glucose-fructose oxidoreductase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101917437-2	chr13	101916937	101917937	+	713.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-149220.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165936151-2	chr2	165935651	165936651	+	713.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51313.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	1.0	3.0	0.5	1.0	4.0	0.0
Merged-chr7-99463884-2	chr7	99463409	99464409	+	713.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2095.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	0.5	3.0	6.0	1.0	14.0	0.0
Merged-chr13-94261918-2	chr13	94261418	94262418	+	713.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346609, intron 1 of 8)	B1_Mus2|SINE|Alu	23363.0	NM_029153	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136454960-4	chr4	136454450	136455450	+	713.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14811.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	7.0	25.5	10.0	29.0	38.5	36.5
Merged-chr3-100189688-2	chr3	100189188	100190188	+	713.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_104341, intron 8 of 13)	intron (NR_104341, intron 8 of 13)	27225.0	NR_104341	14547.0	Mm.279228	NM_010269	ENSMUSG00000027865	Gdap2	C77050|D3Ertd801e	ganglioside-induced differentiation-associated-protein 2	protein-coding	1.0	0.0	5.0	0.0	2.0	4.5
Merged-chr8-70593328-2	chr8	70592801	70593801	+	713.166687	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007924)	TTS (NM_007924)	-1180.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	0.0	0.0	3.5	1.0	0.0	3.5
Merged-chr13-98816395-2	chr13	98815895	98816895	+	713.166687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172591)	promoter-TSS (NM_172591)	-946.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139796099-2	chr5	139795599	139796599	+	713.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010757, intron 1 of 2)	intron (NM_010757, intron 1 of 2)	4563.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91460247-2	chr16	91459747	91460747	+	713.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4857.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	3.5	9.0	7.0	14.0	6.5	14.5
Merged-chr5-135250583-2	chr5	135250083	135251083	+	713.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_010246, exon 1 of 1)	exon (NM_010246, exon 1 of 1)	464.0	NM_010246	14371.0	Mm.6256	NM_010246	ENSMUSG00000049551	Fzd9	mfz9	frizzled class receptor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-36506482-2	chr13	36505982	36506982	+	713.150024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 5 of 5)	intron (NM_001039189, intron 5 of 5)	227995.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-44020206-3	chr4	44019712	44020712	+	713.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080384, intron 4 of 5)	intron (NM_001080384, intron 4 of 5)	7562.0	NM_001290470	12757.0	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90005251-4	chr3	90004840	90005840	+	713.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001165988)	TTS (NM_001165988)	5870.0	NR_106129	102465771.0		NR_106129	ENSMUSG00000098397	Mir7669	Gm27996|mmu-mir-7669	microRNA 7669	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95256344-4	chr10	95255862	95256862	+	713.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	67347.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-70195937-4	chr10	70195443	70196443	+	713.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-8721.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	7.5	19.5	13.0	2.0	9.0	12.0
Merged-chr1-15805018-2	chr1	15804518	15805518	+	713.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152944)	promoter-TSS (NR_152944)	-628.0	NM_009352	21749.0	Mm.4306	NM_009352	ENSMUSG00000025925	Terf1	Pin2|Trbf1|Trf1	telomeric repeat binding factor 1	protein-coding	0.0	6.5	0.0	0.0	0.0	2.0
Merged-chr4-137843258-1	chr4	137842758	137843758	+	713.0	f1_c57bl6.idr	Intergenic	Intergenic	-18979.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	4.0	4.0	0.0	3.0	6.0	0.5
Merged-chr12-99157412-2	chr12	99156912	99157912	+	713.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	5396.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84224713-1	chr8	84224213	84225213	+	713.0	f1_balb.idr	intron (NM_172503, intron 7 of 13)	intron (NM_172503, intron 7 of 13)	12329.0	NM_172503	212168.0	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	0.0	4.5	2.5	0.0	0.0	3.5
Merged-chr14-101639738-2	chr14	101639238	101640238	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168592, intron 1 of 2)	intron (NM_001168592, intron 1 of 2)	733.0	NM_001033132	66200.0	Mm.250474	NM_001033132	ENSMUSG00000075486	Commd6	1110059J08Rik|1700063H17Rik	COMM domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-52527832-2	chr18	52527332	52528332	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286182, intron 3 of 7)	intron (NM_001286182, intron 3 of 7)	1889.0	NM_001286181	16948.0	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94499119-2	chr16	94498619	94499619	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 7 of 7)	intron (NM_007834, intron 7 of 7)	27510.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-124340900-2	chr1	124340400	124341400	+	713.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-295341.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24743022-2	chr17	24742522	24743522	+	713.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001346668)	TTS (NM_001346668)	6429.0	NM_001346668	27361.0	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	3.0	18.5	10.0	2.0	6.5	15.5
Merged-chr9-102627093-2	chr9	102626593	102627593	+	713.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301689)	promoter-TSS (NM_001301689)	797.0	NM_181394	69010.0	Mm.2000	NM_181394	ENSMUSG00000035048	Anapc13	1810004D07Rik|APC13|SWM1	anaphase promoting complex subunit 13	protein-coding	32.0	92.5	82.0	35.0	125.5	73.0
Merged-chr19-43498616-2	chr19	43498116	43499116	+	713.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	25989.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	2.0	7.5	0.0	9.0	3.0	8.5
Merged-chr18-73812203-2	chr18	73811679	73812679	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145494, intron 1 of 15)	intron (NM_145494, intron 1 of 15)	3213.0	NM_145494	107029.0	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	16.5	28.5	37.5	23.5	44.5	27.0
Merged-chr9-107675371-1	chr9	107674871	107675871	+	713.0	f1_c57bl6.idr	3' UTR (NM_008140, exon 9 of 9)	3' UTR (NM_008140, exon 9 of 9)	4221.0	NM_008140	14685.0	Mm.284853	NM_008140	ENSMUSG00000034837	Gnat1	Gnat-1|Ird1|Ird2|Tralpha|irdc|irdr|transducin	guanine nucleotide binding protein, alpha transducing 1	protein-coding	0.0	0.0	2.5	0.0	0.0	8.0
Merged-chr2-126472059-2	chr2	126471559	126472559	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 3 of 27)	intron (NM_001359975, intron 3 of 27)	19494.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173003032-1	chr2	173002532	173003532	+	713.0	f1_c57bl6.idr	intron (NM_175112, intron 2 of 11)	intron (NM_175112, intron 2 of 11)	2915.0	NM_175112	66679.0	Mm.4113	NM_175112	ENSMUSG00000027509	Rae1	3230401I12Rik|D2Ertd342e|MNRP|MNRP41	ribonucleic acid export 1	protein-coding	10.0	4.5	3.5	0.0	0.0	6.0
Merged-chr5-144807109-2	chr5	144806609	144807609	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081362, intron 30 of 70)	intron (NM_001081362, intron 30 of 70)	38317.0	NM_001081362	100683.0	Mm.273570	NM_001081362	ENSMUSG00000045482	Trrap	AI481500	transformation/transcription domain-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-125466063-2	chr1	125465563	125466563	+	713.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-30336.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93489980-1	chr10	93489480	93490480	+	713.0	f1_balb.idr	intron (NM_010401, intron 2 of 19)	intron (NM_010401, intron 2 of 19)	1212.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	0.0	3.0	2.5	4.5	9.0	4.0
Merged-chr12-36031144-1	chr12	36030644	36031644	+	713.0	f1_balb.idr	intron (NM_025359, intron 1 of 5)	intron (NM_025359, intron 1 of 5)	11334.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	5.0	12.0	5.0	15.0	16.5	16.0
Merged-chr1-171407965-2	chr1	171407461	171408461	+	713.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001005508, exon 12 of 12)	exon (NM_001005508, exon 12 of 12)	-3352.0	NM_001305678	22278.0	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	2.0	13.0	8.5	6.5	8.5	5.0
Merged-chr11-117077788-2	chr11	117077288	117078288	+	713.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105853)	TTS (NR_105853)	440.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47534448-1	chr14	47533948	47534948	+	713.0	f1_balb.idr	Intergenic	Intergenic	33986.0	NM_172599	100504663.0	Mm.287279	NM_172599	ENSMUSG00000037526	Atg14	4832427M01|Atg14L|D14Ertd114e|D14Ertd436e	autophagy related 14	protein-coding	22.5	28.0	34.0	0.0	3.0	2.5
Merged-chr19-55641178-2	chr19	55640678	55641678	+	713.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045318, exon 4 of 4)	non-coding (NR_045318, exon 4 of 4)	61026.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-13036137-2	chr7	13035637	13036637	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145578, intron 4 of 5)	intron (NM_145578, intron 4 of 5)	-1360.0	NM_001360731	68953.0	Mm.295670	NM_026885	ENSMUSG00000033916	Chmp2a	1500016L11Rik|mVps2	charged multivesicular body protein 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103212971-2	chr11	103212471	103213471	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177801, intron 1 of 4)	B1_Mus2|SINE|Alu	-4423.0	NM_001254724	69441.0	Mm.380648	NM_027082	ENSMUSG00000020940	1700023F06Rik	-	RIKEN cDNA 1700023F06 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180396777-2	chr1	180396277	180397277	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	B3|SINE|B2	-66228.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-100341965-1	chr6	100341465	100342465	+	713.0	f0_balb.idr	Intergenic	Intergenic	-54607.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-72494673-1	chr16	72494173	72495173	+	713.0	f1_c57bl6.idr	Intergenic	Intergenic	-168476.0	NM_019413	19876.0	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	2.0	0.0	2.5	0.0	0.0	0.0
Merged-chr9-14750982-2	chr9	14750482	14751482	+	713.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010242, exon 1 of 1)	exon (NM_010242, exon 1 of 1)	1140.0	NM_010242	14345.0	Mm.63450	NM_010242	ENSMUSG00000049307	Fut4	AI451562|CD15|FAL|FucT-IV|LeX|SSEA-1|Ssea1	fucosyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64926414-2	chr1	64925914	64926914	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 2 of 7)	B4A|SINE|B4	30410.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110650503-2	chr5	110650003	110651003	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153570, intron 8 of 14)	intron (NM_153570, intron 8 of 14)	2879.0	NM_153570	100608.0	Mm.29960	NM_153570	ENSMUSG00000033294	Noc4l	AI326906	NOC4 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-65423010-1	chr16	65422510	65423510	+	713.0	f0_balb.idr	Intergenic	Intergenic	-97619.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	16.5	3.0	18.5	5.0	0.0	6.0
Merged-chr5-129501877-4	chr5	129501385	129502385	+	713.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359952, intron 1 of 17)	CpG	654.0	NM_172276	231769.0	Mm.288714	NM_172276	ENSMUSG00000029439	Sfswap	1190005N23Rik|6330437E22Rik|AI197402|AW212079|SWAP|Sfrs8|Srsf8	splicing factor SWAP	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139178591-3	chr4	139178085	139179085	+	713.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033543, exon 2 of 3)	non-coding (NR_033543, exon 2 of 3)	2070.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	40.0	49.0	30.0	4.0	11.5	3.5
Merged-chr7-45417229-2	chr7	45416729	45417729	+	713.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_198190)	TTS (NM_198190)	3534.0	NM_198190	78405.0	Mm.20344	NM_198190	ENSMUSG00000074121	Ntf5	2900040K06Rik|AI462899|NT-4|NT-5|NT4|NT4/5|Ntf-5|Ntf4	neurotrophin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-54046677-2	chr19	54046177	54047177	+	713.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007417, exon 1 of 1)	exon (NM_007417, exon 1 of 1)	1495.0	NM_007417	11551.0	Mm.235195	NM_007417	ENSMUSG00000033717	Adra2a	AW122659|Adra-2|Adra-2a|alpha(2A)AR|alpha2-C10|alpha2A|alpha2A-AR	adrenergic receptor, alpha 2a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-28490263-2	chr6	28489763	28490763	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 1 of 23)	B3A|SINE|B2	9915.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-85112355-1	chr16	85111855	85112855	+	713.0	f0_balb.idr	intron (NM_001198825, intron 2 of 15)	intron (NM_001198825, intron 2 of 15)	61352.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-62804729-2	chr14	62804229	62805229	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045503, intron 2 of 6)	intron (NR_045503, intron 2 of 6)	-32961.0	NM_175546	268752.0	Mm.1960	NM_175546	ENSMUSG00000014547	Wdfy2	5830485M08|B130024L21Rik|ProF|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103371828-2	chr11	103371328	103372328	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 8 of 11)	intron (NM_183034, intron 8 of 11)	-8136.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-55115075-2	chr15	55114575	55115575	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145470, intron 1 of 8)	RSINE1|SINE|B4	-1493.0	NR_045093	100503794.0	Mm.360519	NR_045093	ENSMUSG00000053749	Gm9920	-	predicted gene 9920	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-15306567-2	chr4	15306154	15307154	+	713.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40834.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	3.5	5.5	0.0	3.0	6.0	1.5
Merged-chr15-80082862-1	chr15	80082362	80083362	+	713.0	f1_c57bl6.idr	promoter-TSS (NR_028281)	promoter-TSS (NR_028281)	44.0	NR_028281	100302600.0		NR_028281		Snord43	MBII-47	small nucleolar RNA, C/D box 43	snoRNA	71.0	198.5	208.0	81.0	245.0	191.5
Merged-chr16-32687848-2	chr16	32687348	32688348	+	713.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	14694.0	NM_001289443	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8690474-1	chr11	8689974	8690974	+	713.0	f1_c57bl6.idr	Intergenic	Intergenic	-25939.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	2.5	4.0	4.5	5.5	6.5	5.5
Merged-chr12-100023441-2	chr12	100022941	100023941	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	B4A|SINE|B4	58942.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38929279-2	chr2	38928779	38929779	+	713.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2701.0	NM_172854	241327.0	Mm.103491	NM_172854	ENSMUSG00000046618	Olfml2a	4932431K08Rik|mFLJ00237	olfactomedin-like 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120002263-1	chr2	120001763	120002763	+	713.0	f0_balb.idr	intron (NM_001355293, intron 2 of 30)	intron (NM_001355293, intron 2 of 30)	-15254.0	NR_106125	102466842.0		NR_106125	ENSMUSG00000098632	Mir7665	Gm27478|mmu-mir-7665	microRNA 7665	ncRNA	15.0	17.0	11.5	6.0	14.5	15.0
Merged-chr8-34157029-2	chr8	34156529	34157529	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026432, intron 1 of 5)	intron (NM_026432, intron 1 of 5)	2466.0	NM_026432	67887.0	Mm.290353	NM_026432	ENSMUSG00000031532	Saraf	1810045K07Rik|Tmem66	store-operated calcium entry-associated regulatory factor	protein-coding	25.0	28.5	13.0	15.5	43.5	7.0
Merged-chr8-13641414-1	chr8	13640914	13641914	+	713.0	f0_balb.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	36173.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184046512-2	chr1	184046012	184047012	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022019, intron 2 of 3)	intron (NM_022019, intron 2 of 3)	12131.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-17927652-2	chr14	17927152	17928152	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 3 of 9)	intron (NM_001113417, intron 3 of 9)	-53992.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-143149156-2	chr6	143148656	143149656	+	713.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153819, exon 3 of 9)	non-coding (NR_153819, exon 3 of 9)	4775.0	NR_153819	102633311.0	Mm.333484	NR_153819		Gm31108	Gm31169	predicted gene, 31108	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156716859-2	chr2	156716359	156717359	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040505, intron 2 of 3)	intron (NR_040505, intron 2 of 3)	4050.0	NR_040505	74846.0	Mm.443946	NR_040505	ENSMUSG00000086638	4930405A21Rik	-	RIKEN cDNA 4930405A21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101769907-2	chr11	101769407	101770407	+	713.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001316366, exon 13 of 13)	3' UTR (NM_001316366, exon 13 of 13)	15403.0	NM_008815	18612.0	Mm.5025	NM_008815	ENSMUSG00000017724	Etv4	AW414408|Pea-3|Pea3	ets variant 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24280833-2	chr13	24280333	24281333	+	713.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311122)	promoter-TSS (NM_001311122)	-43.0	NM_026825	68732.0	Mm.211047	NM_026825	ENSMUSG00000021338	Carmil1	1110037D04Rik|AI425970|CARMIL|CARML1|D130057M20|Lrrc16|Lrrc16a	capping protein regulator and myosin 1 linker 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123901169-1	chr5	123900669	123901669	+	713.0	f1_balb.idr	Intergenic	B1_Mus1|SINE|Alu	-6106.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	1.0	2.0	0.5	0.0	5.0	2.5
Merged-chr9-116102809-1	chr9	116102309	116103309	+	713.0	f1_balb.idr	intron (NM_029575, intron 5 of 6)	L1MC4a|LINE|L1	72554.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	80.0	77.0	70.0	62.5	90.5	65.0
Merged-chr12-40568257-2	chr12	40567757	40568757	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	122204.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173452564-1	chr1	173452064	173453064	+	713.0	f0_balb.idr	intron (NM_001013779, intron 2 of 8)	L2a|LINE|L2	31960.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	13.0	48.0	29.5	19.5	23.5	21.0
Merged-chr10-111130952-1	chr10	111130452	111131452	+	713.0	f0_balb.idr	Intergenic	Intergenic	-33850.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-60891537-3	chr8	60891023	60892023	+	713.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151662, intron 1 of 2)	intron (NR_151662, intron 1 of 2)	1130.0	NM_001357270	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-80083613-2	chr2	80083113	80084113	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	ORR1E|LTR|ERVL-MaLR	-44711.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr1-172305401-1	chr1	172304901	172305901	+	713.0	f0_balb.idr	Intergenic	Intergenic	-6966.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	4.5	15.0	3.5	16.0	29.0	13.5
Merged-chr4-76688076-1	chr4	76687576	76688576	+	713.0	f1_balb.idr	intron (NM_011211, intron 9 of 39)	intron (NM_011211, intron 9 of 39)	-343833.0	NM_001352628	19266.0	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.0	2.5	0.0	4.5	0.0	3.0
Merged-chr16-58299694-3	chr16	58299195	58300195	+	713.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108840.0	NM_001356484	73379.0	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr5-35722953-1	chr5	35722453	35723453	+	713.0	f0_balb.idr	intron (NM_001359895, intron 2 of 17)	intron (NM_001359895, intron 2 of 17)	6323.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-61004407-3	chr19	61003927	61004927	+	712.972229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 2 of 15)	intron (NM_018869, intron 2 of 15)	114678.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	7.5	1.0	1.5	19.5	5.0	4.5
Merged-chr12-25492976-4	chr12	25492437	25493437	+	712.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	363763.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.0	2.0	0.0	0.0	0.5	0.0
Merged-chr11-114929292-3	chr11	114928813	114929813	+	712.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199221, intron 1 of 3)	MTEa|LTR|ERVL-MaLR	5073.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20960324-3	chr11	20959815	20960815	+	712.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-129207.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	11.5	10.5	10.0	9.5	13.5	16.5
Merged-chr6-128754160-6	chr6	128753690	128754690	+	712.930542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31144.0	NM_001099918	100043861.0	Mm.66911	NM_001099918	ENSMUSG00000079299	Klrb1	4930431A04Rik|Gm4696|Klrb1g|Klrb6|Ly-55|Ly55|NKR-P1G|Nkrp-1e|Nkrp1g	killer cell lectin-like receptor subfamily B member 1	protein-coding	4.0	17.5	3.5	0.0	2.0	0.0
Merged-chr9-108479698-3	chr9	108479149	108480149	+	712.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008483)	promoter-TSS (NM_008483)	-213.0	NM_008483	16779.0	Mm.27560	NM_008483	ENSMUSG00000052911	Lamb2	AW211941|Lamb-2|Lams|npht	laminin, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-87261652-4	chr12	87261169	87262169	+	712.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142581, intron 2 of 18)	MTC|LTR|ERVL-MaLR	2575.0	NM_134044	104799.0	Mm.208750	NM_134044	ENSMUSG00000021038	Vipas39	6720456H09Rik|9330175H22Rik|AI413782|SPE-39|Spe39|Vipar|hSPE-39	VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79765760-2	chr10	79765260	79766260	+	712.900024	f1_balb.idr|f1_c57bl6.idr	intron (NR_027505, intron 1 of 7)	B1_Mus1|SINE|Alu	1192.0	NM_144528	70294.0	Mm.466670	NM_144528	ENSMUSG00000035890	Rnf126	2610010O19Rik	ring finger protein 126	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160026048-3	chr2	160025542	160026542	+	712.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040499, intron 2 of 3)	intron (NR_040499, intron 2 of 3)	9389.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	0.0	7.0	1.0	0.0	2.0	0.0
Merged-chr6-97311432-2	chr6	97310943	97311943	+	712.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 12 of 23)	intron (NM_145148, intron 12 of 23)	-58663.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.5	12.0	2.5	0.0	1.0	4.0
Merged-chr4-122854432-2	chr4	122853932	122854932	+	712.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_008917, exon 7 of 9)	exon (NM_008917, exon 7 of 9)	18205.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	5.5	16.0	7.5	4.0	3.0	3.5
Merged-chr3-129213896-3	chr3	129213393	129214393	+	712.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287048)	promoter-TSS (NM_001287048)	-39.0	NM_001287048	18741.0	Mm.246804	NM_011098	ENSMUSG00000028023	Pitx2	9430085M16Rik|Brx1|Brx1b|Munc30|Otlx2|Ptx2|Rieg	paired-like homeodomain transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29304678-2	chr7	29304178	29305178	+	712.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_013874, intron 1 of 11)	CpG	673.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90139767-3	chr7	90139280	90140280	+	712.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	L1MB7|LINE|L1	9567.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-116999858-4	chr2	116999348	117000348	+	712.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	99696.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-189689198-3	chr1	189688681	189689681	+	712.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1095.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	22.0	6.0	6.0	10.0	38.0	23.5
Merged-chr4-136887510-10	chr4	136887105	136888105	+	712.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1428.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	169.0	423.0	269.0	120.0	316.0	190.0
Merged-chr10-80533806-2	chr10	80533306	80534306	+	712.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_026094, intron 6 of 27)	MTD|LTR|ERVL-MaLR	5318.0	NM_026094	67331.0	Mm.52511	NM_026094	ENSMUSG00000003341	Atp8b3	1700042F02Rik|1700056N23Rik|ATPIK|SAPLT	ATPase, class I, type 8B, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120098057-4	chr7	120097503	120098503	+	712.766663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4423.0	NM_145586	233806.0	Mm.257952	NM_145586	ENSMUSG00000030917	Tmem159	8430420C20Rik	transmembrane protein 159	protein-coding	2.5	0.0	0.0	0.0	0.0	1.0
Merged-chr4-126031968-2	chr4	126031468	126032468	+	712.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252651, intron 5 of 14)	intron (NM_001252651, intron 5 of 14)	7309.0	NM_001252651	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19636495-2	chr7	19635995	19636995	+	712.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_019649, intron 9 of 13)	intron (NM_019649, intron 9 of 13)	-7057.0	NM_009046	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56479643-3	chr18	56479207	56480207	+	712.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360917, intron 5 of 13)	intron (NM_001360917, intron 5 of 13)	47575.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	10.5	46.5	23.5	39.5	65.0	37.5
Merged-chr18-24227847-4	chr18	24227346	24228346	+	712.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361200, intron 1 of 12)	ORR1B1-int|LTR|ERVL-MaLR	21852.0	NM_001160404	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-15983122-2	chr7	15982622	15983622	+	712.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081418, intron 6 of 13)	intron (NM_001081418, intron 6 of 13)	-15587.0	NM_153068	259300.0	Mm.138215	NM_153068	ENSMUSG00000074364	Ehd2	BC027084|C130052H20Rik	EH-domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-16438660-3	chr16	16438179	16439179	+	712.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 11 of 16)	MRLTR33|LTR|ERVK	-79648.0	NM_001360009	74006.0	Mm.218820	NM_152816	ENSMUSG00000022789	Dnm1l	6330417M19Rik|AI450666|Dlp1|Dnmlp1|Drp1|python	dynamin 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-43377056-3	chr16	43376548	43377548	+	712.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	43148.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-98348819-3	chr5	98348317	98349317	+	712.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024614, intron 2 of 5)	intron (NM_001024614, intron 2 of 5)	19513.0	NM_001024614	75784.0	Mm.443240	NM_001024614	ENSMUSG00000057816	1700007G11Rik	4930428O21Rik	RIKEN cDNA 1700007G11 gene	protein-coding	1.0	0.0	0.0	1.0	0.0	0.0
Merged-chr6-46143342-3	chr6	46142847	46143847	+	712.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004357, intron 8 of 23)	intron (NM_001004357, intron 8 of 23)	1083286.0	NM_001004357	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	2.0	1.0	2.5	2.0	9.0	0.0
Merged-chr4-136132812-3	chr4	136132349	136133349	+	712.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-10973.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	5.5	3.5	3.0	2.0	4.5	0.5
Merged-chr6-58918509-3	chr6	58918006	58919006	+	712.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361966, intron 25 of 25)	intron (NM_001361966, intron 25 of 25)	-11380.0	NM_021432	58243.0	Mm.389747	NM_021432	ENSMUSG00000055430	Nap1l5	1110020M21Rik	nucleosome assembly protein 1-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46374605-3	chr4	46374083	46375083	+	712.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	14840.0	NM_029086	74753.0	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-104247752-3	chr12	104247251	104248251	+	712.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033450)	promoter-TSS (NR_033450)	-145.0	NR_033450	546546.0	Mm.390522	NM_001034870		Serpina3h	6C28|Spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3H	pseudo	13.5	2.0	5.0	0.0	0.0	4.0
Merged-chr17-63400862-3	chr17	63400378	63401378	+	712.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 4 of 8)	Lx7|LINE|L1	-87905.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43376758-3	chr17	43376272	43377272	+	712.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357332, intron 1 of 20)	intron (NM_001357332, intron 1 of 20)	-12694.0	NM_001081178	224792.0	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119755873-4	chr13	119755246	119756246	+	712.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175538, exon 1 of 4)	5' UTR (NM_175538, exon 1 of 4)	136.0	NM_175538	245269.0	Mm.403943	NM_175538	ENSMUSG00000095930	Nim1k	E130304F04Rik|Nim1	NIM1 serine/threonine protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120470248-2	chr11	120469748	120470748	+	712.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159328, intron 4 of 21)	intron (NM_001159328, intron 4 of 21)	2613.0	NM_001159328	15239.0	Mm.7919	NM_008244	ENSMUSG00000025793	Hgs	Hgr|Hrs|ZFYVE8|tn	HGF-regulated tyrosine kinase substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-50137057-2	chr18	50136543	50137543	+	712.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008292, intron 2 of 23)	intron (NM_008292, intron 2 of 23)	8842.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	8.0	9.0	8.0	8.5	9.0	10.0
Merged-chr2-44979976-2	chr2	44979476	44980476	+	712.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43201.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95524458-3	chr13	95523991	95524991	+	712.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007974, intron 1 of 1)	CpG	749.0	NM_007974	14063.0	Mm.1614	NM_007974	ENSMUSG00000021678	F2rl1	Gpcr11|PAR-2|Par2	coagulation factor II (thrombin) receptor-like 1	protein-coding	12.5	0.5	3.5	1.5	0.5	3.5
Merged-chr10-26785370-3	chr10	26784875	26785875	+	712.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	12863.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114915988-3	chr5	114915484	114916484	+	712.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-7256.0	NM_001359946	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	3.5	6.5	5.0	5.5	6.0	4.5
Merged-chr8-120482831-2	chr8	120482331	120483331	+	712.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-6035.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-71785147-2	chr18	71784647	71785647	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007831, intron 5 of 28)	Lx8|LINE|L1	565922.0	NM_007831	13176.0	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-124140070-2	chr10	124139580	124140580	+	712.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	-328994.0	NR_028310	75030.0	Mm.159403	NR_028310	ENSMUSG00000112364	4930503E24Rik	-	eukaryotic translation initiation factor 3, subunit I pseudogene	pseudo	0.0	2.0	1.0	0.0	1.0	0.0
Merged-chr1-58741985-2	chr1	58741485	58742485	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 7 of 8)	intron (NM_001355056, intron 7 of 8)	11433.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-87261093-2	chr12	87260593	87261593	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142581, intron 2 of 18)	intron (NM_001142581, intron 2 of 18)	3151.0	NM_134044	104799.0	Mm.208750	NM_134044	ENSMUSG00000021038	Vipas39	6720456H09Rik|9330175H22Rik|AI413782|SPE-39|Spe39|Vipar|hSPE-39	VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170855217-2	chr1	170854717	170855717	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 1 of 15)	intron (NM_001081304, intron 1 of 15)	12554.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27721638-2	chr2	27721138	27722138	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	11055.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4683305-2	chr16	4682805	4683805	+	712.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023646)	promoter-TSS (NM_023646)	-765.0	NM_023646	83945.0	Mm.248337	NM_023646	ENSMUSG00000004069	Dnaja3	1200003J13Rik|1810053A11Rik|C81173|Tid-1|Tid1l	DnaJ heat shock protein family (Hsp40) member A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5462368-2	chr19	5461868	5462868	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021438, intron 3 of 9)	B1_Mus2|SINE|Alu	1761.0	NM_021438	58249.0	Mm.329656	NM_021438	ENSMUSG00000024911	Fibp	2010004G08Rik|2010005N21Rik|3010027N18Rik	fibroblast growth factor (acidic) intracellular binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101059236-2	chr7	101058736	101059736	+	712.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER2|DNA|TcMar-Tigger	-47183.0	NM_001302346	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr8-11491432-2	chr8	11490932	11491932	+	712.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	-6074.0	NM_001190357	69225.0	Mm.64911	NM_026995	ENSMUSG00000031505	Naxd	0710008K08Rik|2810407E01Rik|Carkd	NAD(P)HX dehydratase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165611507-2	chr1	165611007	165612007	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	L2|LINE|L2	23034.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90652962-3	chr5	90652474	90653474	+	712.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12447.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr16-30531003-2	chr16	30530503	30531503	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357415, intron 9 of 11)	intron (NM_001357415, intron 9 of 11)	19575.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80209092-2	chr18	80208592	80209592	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025299, intron 2 of 3)	intron (NM_025299, intron 2 of 3)	2225.0	NM_001042408	27366.0	Mm.172411	NM_025299	ENSMUSG00000057130	Txnl4a	D18Wsu98e|Dim1|Txnl4|U5-15kD|U5-15kDa	thioredoxin-like 4A	protein-coding	14.5	8.0	4.5	2.5	3.5	5.5
Merged-chr6-122607999-3	chr6	122607517	122608517	+	712.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008108, intron 1 of 1)	intron (NM_008108, intron 1 of 1)	2070.0	NM_008108	14562.0	Mm.299742	NM_008108	ENSMUSG00000030117	Gdf3	C78318|Gdf-3|Vgr-2|Vgr2|ecat9	growth differentiation factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107095664-2	chr13	107095164	107096164	+	712.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73094.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8637347-2	chr15	8636847	8637847	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_148938, intron 9 of 9)	B2_Mm2|SINE|B2	73460.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-154081129-2	chr1	154080629	154081629	+	712.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120058.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135470145-2	chr3	135469645	135470645	+	712.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15466.0	NM_027288	110173.0	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86229125-2	chr15	86228625	86229625	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 1 of 12)	URR1B|DNA|hAT-Charlie	14666.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53051022-2	chr19	53050522	53051522	+	712.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12368.0	NM_133216	170750.0	Mm.99776	NM_133216	ENSMUSG00000025027	Xpnpep1	D230045I08Rik|sAMP	X-prolyl aminopeptidase (aminopeptidase P) 1, soluble	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90211918-2	chr3	90211407	90212407	+	712.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027015)	TTS (NM_027015)	1740.0	NM_001190258	100043813.0	Mm.270283	NM_001190258	ENSMUSG00000050621	Rps27rt	Gm9846|Rps27l2	ribosomal protein S27, retrogene	protein-coding	4.0	4.0	7.5	5.0	4.0	14.5
Merged-chr7-114284035-2	chr7	114283535	114284535	+	712.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-7919.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	0.5	6.0	0.5	2.5	0.0	3.0
Merged-chr2-32211997-2	chr2	32211497	32212497	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172661, intron 14 of 29)	intron (NM_172661, intron 14 of 29)	-24686.0	NM_145145	99011.0	Mm.31192	NM_145145	ENSMUSG00000039254	Pomt1	AI505244	protein-O-mannosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-5414621-2	chr5	5414121	5415121	+	712.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34370.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19512619-2	chr7	19512119	19513119	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_138584, intron 1 of 3)	intron (NR_138584, intron 1 of 3)	3949.0	NM_025960	67091.0	Mm.44213	NM_025960	ENSMUSG00000002043	Trappc6a	1810073E21Rik|4930519D19Rik|AI480686|TRS33|mhyp	trafficking protein particle complex 6A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-32507033-3	chr6	32506522	32507522	+	712.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 2 of 31)	intron (NM_175750, intron 2 of 31)	-4119.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94208940-2	chr11	94208440	94209440	+	712.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-2514.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-84126106-2	chr6	84125606	84126606	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 30 of 54)	intron (NM_001077694, intron 30 of 54)	106720.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49035648-2	chr7	49035148	49036148	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	ORR1D2|LTR|ERVL-MaLR	76575.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50843507-2	chr16	50843007	50844007	+	712.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	60098.0	NR_131005	78639.0	Mm.160109	NR_131005	ENSMUSG00000092276	1700116B05Rik	-	RIKEN cDNA 1700116B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40225824-2	chr12	40225324	40226324	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045157, intron 2 of 2)	intron (NR_045157, intron 2 of 2)	2460.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96632420-2	chr9	96631920	96632920	+	712.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053268)	promoter-TSS (NM_053268)	-917.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43963950-2	chr4	43963450	43964450	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027450, intron 1 of 4)	intron (NM_027450, intron 1 of 4)	6248.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-40904929-2	chr17	40904429	40905429	+	712.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001145060, exon 5 of 5)	exon (NM_001145060, exon 5 of 5)	9421.0	NM_001145060	435528.0	Mm.359622	NM_001145060	ENSMUSG00000091043	Glyatl3	EG435528|Gm5683	glycine-N-acyltransferase-like 3	protein-coding	0.5	0.0	0.0	0.5	0.0	0.0
Merged-chr1-55874318-4	chr1	55873805	55874805	+	712.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56936.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	2.0	0.0	3.5	0.5	0.0	0.0
Merged-chr19-56455560-2	chr19	56455060	56456060	+	712.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6077.0	NM_001164263	226245.0	Mm.156742	NM_172641	ENSMUSG00000035818	Plekhs1	9930023K05Rik	pleckstrin homology domain containing, family S member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138657548-2	chr5	138657048	138658048	+	712.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CGTG)n|Simple_repeat|Simple_repeat	34689.0	NM_183025	243308.0	Mm.36612	NM_183025	ENSMUSG00000056014	A430033K04Rik	C86988	RIKEN cDNA A430033K04 gene	protein-coding	0.0	4.0	1.0	0.0	5.5	0.0
Merged-chr13-73605969-2	chr13	73605469	73606469	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146047, intron 2 of 16)	intron (NM_146047, intron 2 of 16)	1967.0	NM_146047	218335.0	Mm.30099	NM_146047	ENSMUSG00000021610	Clptm1l	C130052I12Rik|Crr9	CLPTM1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14996219-2	chr8	14995722	14996722	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037736, intron 26 of 27)	intron (NM_001037736, intron 26 of 27)	-14803.0	NM_029116	74901.0	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	1.5	11.5	7.5	3.5	1.0	2.5
Merged-chr5-8679341-2	chr5	8678841	8679841	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011076, intron 6 of 29)	intron (NM_011076, intron 6 of 29)	-56389.0	NM_198620	242819.0	Mm.332192	NM_198620	ENSMUSG00000040570	Rundc3b	Gm440	RUN domain containing 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-72531272-2	chr9	72530772	72531772	+	712.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033536)	promoter-TSS (NM_001033536)	586.0	NR_045735	75115.0	Mm.280755	NR_045735	ENSMUSG00000096986	4930509E16Rik	-	RIKEN cDNA 4930509E16 gene	ncRNA	6.5	18.0	6.0	15.0	14.0	10.5
Merged-chr19-55836986-2	chr19	55836486	55837486	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	RLTR20C2_MM|LTR|ERVK	-58335.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87512450-2	chr6	87511950	87512950	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	L1M5|LINE|L1	-16123.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	6.5	8.5	7.5	2.0	6.5	12.0
Merged-chr7-143004917-2	chr7	143004417	143005417	+	712.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001128080)	promoter-TSS (NM_001128080)	-129.0	NM_001128080	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47432079-2	chr19	47431579	47432579	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	RSINE1|SINE|B4	32332.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	18.5	64.0	41.0	26.5	54.5	30.0
Merged-chr15-41949145-2	chr15	41948645	41949645	+	712.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79425.0	NM_175456	223513.0	Mm.148913	NM_175456	ENSMUSG00000042895	Abra	C130068O12Rik|STARS	actin-binding Rho activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148878883-4	chr2	148878406	148879406	+	712.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3394.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-110622053-3	chr8	110621547	110622547	+	712.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151675, intron 1 of 17)	ORR1E|LTR|ERVL-MaLR	3480.0	NR_151675	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84329682-4	chr17	84329195	84330195	+	712.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 28 of 37)	intron (NM_183021, intron 28 of 37)	136513.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-80878940-2	chr8	80878391	80879391	+	712.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_021356, intron 1 of 9)	intron (NM_021356, intron 1 of 9)	1588.0	NM_021356	14388.0	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	5.0	3.0	21.0	9.0	18.0	10.5
Merged-chr6-31107289-2	chr6	31106789	31107789	+	712.357178	f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-44196.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172409203-2	chr1	172408703	172409703	+	712.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32672.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	11.5	9.5	10.0	1.5	13.0	6.5
Merged-chr4-114982757-4	chr4	114982254	114983254	+	712.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025647, intron 1 of 5)	B3|SINE|B2	4474.0	NM_025647	66588.0	Mm.294159	NM_025647	ENSMUSG00000028719	Cmpk1	0610011D08Rik|CK|Cmpk|UMP-CMPk	cytidine monophosphate (UMP-CMP) kinase 1	protein-coding	31.5	47.5	55.0	14.5	29.5	26.0
Merged-chr16-75983004-3	chr16	75982504	75983504	+	712.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-17780.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59201613-2	chr2	59201113	59202113	+	712.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	40763.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-77140311-3	chr5	77139806	77140806	+	712.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25183.0	NM_175606	74318.0	Mm.181852	NM_175606	ENSMUSG00000059325	Hopx	1110018K11Rik|1200015P04Rik|2300002F06Rik|AI848177|AW490897|Cameo|Hdop|Hod|Hop|Ob1|Obl|Toto	HOP homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-18360081-2	chr5	18359581	18360581	+	712.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_010305, exon 1 of 8)	exon (NM_010305, exon 1 of 8)	332.0	NM_010305	14677.0	Mm.254629	NM_010305	ENSMUSG00000057614	Gnai1	AU046200|Gialpha1|Gnai-1	guanine nucleotide binding protein (G protein), alpha inhibiting 1	protein-coding	0.5	0.0	0.0	0.5	0.0	0.0
Merged-chr17-47039040-4	chr17	47038533	47039533	+	712.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28501.0	NM_001177374	224826.0	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180421389-4	chr1	180420847	180421847	+	712.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 7 of 7)	intron (NM_001081175, intron 7 of 7)	62157.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78248587-7	chr17	78248076	78249076	+	712.238098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 2 of 16)	intron (NM_015800, intron 2 of 16)	48328.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-56270628-3	chr3	56270130	56271130	+	712.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86929.0	NM_030595	26422.0	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131821136-3	chr2	131820644	131821644	+	712.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_029381, exon 3 of 3)	non-coding (NR_029381, exon 3 of 3)	26512.0	NR_029381	414081.0	Mm.246905	NR_029381	ENSMUSG00000086822	5330413P13Rik	-	RIKEN cDNA 5330413P13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64342243-3	chr7	64341742	64342742	+	712.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	31853.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52945469-3	chr2	52944973	52945973	+	712.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	87605.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34283958-2	chr10	34283456	34284456	+	712.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009433, exon 1 of 1)	3' UTR (NM_009433, exon 1 of 1)	1766.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-14311594-2	chr16	14311094	14312094	+	712.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_025345, intron 2 of 4)	B2_Mm2|SINE|B2	5738.0	NM_025345	66086.0	Mm.42072	NM_025345	ENSMUSG00000022677	Fopnl	0610037P05Rik	Fgfr1op N-terminal like	protein-coding	3.5	11.5	0.0	1.0	1.0	0.5
Merged-chr11-17002056-2	chr11	17001576	17002576	+	712.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	L1_Mus1|LINE|L1	6642.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105324567-2	chr8	105324067	105325067	+	712.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_177449, intron 1 of 4)	intron (NM_177449, intron 1 of 4)	1709.0	NM_177449	234684.0	Mm.381717	NM_177449	ENSMUSG00000041679	Lrrc29	A630024J02Rik|FBL9|FBXL9	leucine rich repeat containing 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43276640-3	chr5	43276142	43277142	+	712.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177379, intron 5 of 10)	intron (NM_001177379, intron 5 of 10)	-41288.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80235464-3	chr15	80234917	80235917	+	712.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357659, intron 2 of 6)	intron (NM_001357659, intron 2 of 6)	1337.0	NM_178719	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	9.0	17.0	9.0	4.5	13.5	14.5
Merged-chr16-4199433-3	chr16	4198935	4199935	+	712.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025432, intron 1 of 30)	intron (NM_001025432, intron 1 of 30)	13969.0	NM_001025432	12914.0	Mm.132238	NM_001025432	ENSMUSG00000022521	Crebbp	AW558298|CBP|CBP/p300|KAT3A|p300/CBP	CREB binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146906001-3	chr5	146905506	146906506	+	712.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42651.0	NM_025652	66596.0	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-54481889-3	chr4	54481390	54482390	+	712.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-466055.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	0.0	0.5	4.0	0.0	1.0	2.0
Merged-chr2-167380809-3	chr2	167380319	167381319	+	712.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31641.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-44994507-2	chr2	44994007	44995007	+	712.099976	f1_balb.idr|f1_c57bl6.idr	exon (NM_001355289, exon 10 of 11)	exon (NM_001355289, exon 10 of 11)	28670.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45309677-3	chr7	45309174	45310174	+	712.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175130, intron 17 of 24)	intron (NM_175130, intron 17 of 24)	-15284.0	NR_110499	100040970.0	Mm.289810	NR_110499	ENSMUSG00000046721	Rpl14-ps1	Gm9811	ribosomal protein L14, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75649215-3	chr7	75648713	75649713	+	712.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	193679.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56566280-3	chr18	56565894	56566894	+	712.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162989, intron 1 of 4)	intron (NM_001162989, intron 1 of 4)	3825.0	NM_001162989	56698.0	Mm.214569	NM_019996	ENSMUSG00000008301	Phax	2810055C14Rik|4933427L19Rik|AU018701|AU018854|D18Ertd65e|Rnuxa|p55	phosphorylated adaptor for RNA export	protein-coding	5.0	10.5	23.5	11.5	4.0	2.5
Merged-chr17-27125340-3	chr17	27124852	27125852	+	712.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026063, intron 2 of 3)	intron (NM_026063, intron 2 of 3)	8539.0	NM_026063	67267.0	Mm.272389	NM_026063	ENSMUSG00000024208	Uqcc2	2900010M23Rik|Cbp6|M19|Mnf1	ubiquinol-cytochrome c reductase complex assembly factor 2	protein-coding	1.5	0.0	0.0	0.0	1.0	0.0
Merged-chr14-79533049-2	chr14	79532549	79533549	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	17375.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-107885251-1	chr2	107884751	107885751	+	712.0	f1_balb.idr	Intergenic	RMER1A|Other|Other	594662.0	NM_021275	16492.0	Mm.142718	NM_021275	ENSMUSG00000042604	Kcna4	Kv1.4	potassium voltage-gated channel, shaker-related subfamily, member 4	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr10-81549062-2	chr10	81548562	81549562	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4016.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164874117-2	chr2	164873617	164874617	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5251.0	NM_146129	228866.0	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	1.5	4.0	3.0	1.0	5.5	5.0
Merged-chr7-31114619-2	chr7	31114116	31115116	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110252, intron 2 of 13)	intron (NM_001110252, intron 2 of 13)	710.0	NM_008281	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	4.0	7.0	15.0	16.0	24.5	10.5
Merged-chr10-118419210-2	chr10	118418710	118419710	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21836.0	NM_008337	15978.0	Mm.240327	NM_008337	ENSMUSG00000055170	Ifng	IFN-g|Ifg	interferon gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43864602-2	chr5	43864102	43865102	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4207.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93798058-4	chr16	93797591	93798591	+	712.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027293, intron 27 of 36)	intron (NM_027293, intron 27 of 36)	-3190.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83351828-2	chr6	83351328	83352328	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175277, intron 2 of 3)	intron (NM_175277, intron 2 of 3)	2344.0	NM_175277	78653.0	Mm.391470	NM_175277	ENSMUSG00000045160	Bola3	1810056O20Rik	bolA-like 3 (E. coli)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76531463-2	chr14	76530963	76531963	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10608.0	NR_045660	75789.0	Mm.159571	NR_045660	ENSMUSG00000097172	4930444M15Rik	-	RIKEN cDNA 4930444M15 gene	ncRNA	0.0	0.0	4.0	3.0	2.5	0.0
Merged-chr19-55937380-2	chr19	55936880	55937880	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	42059.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-15149124-1	chr4	15148624	15149624	+	712.0	f0_balb.idr	promoter-TSS (NM_178617)	promoter-TSS (NM_178617)	7.0	NM_178617	69352.0	Mm.389031	NM_178617	ENSMUSG00000040536	Necab1	1700003H21Rik|Efcbp1|STIP-1	N-terminal EF-hand calcium binding protein 1	protein-coding	0.5	0.0	4.0	0.0	0.5	2.0
Merged-chr8-69912557-2	chr8	69912057	69913057	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 10 of 12)	B1_Mur2|SINE|Alu	-9999.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-86825740-1	chr8	86825240	86826240	+	712.0	f0_balb.idr	Intergenic	Intergenic	59518.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr9-103012740-2	chr9	103012240	103013240	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033314, intron 1 of 13)	B4|SINE|B4	4251.0	NM_033314	24059.0	Mm.207106	NM_033314	ENSMUSG00000032548	Slco2a1	2310021C19Rik|Pgt|Slc21a2|mPgt	solute carrier organic anion transporter family, member 2a1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129743904-3	chr4	129743449	129744449	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1646.0	NR_045036	20218.0	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	75.5	133.5	97.0	36.0	133.5	56.0
Merged-chr10-19240151-2	chr10	19239651	19240651	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72913.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.0	3.0	3.5	0.0	3.0	4.0
Merged-chr8-122891336-2	chr8	122890836	122891836	+	712.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037865, exon 10 of 14)	non-coding (NR_037865, exon 10 of 14)	42962.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101903066-2	chr5	101902566	101903566	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 30 of 66)	intron (NM_172882, intron 30 of 66)	137936.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80079877-2	chr11	80079377	80080377	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018776, intron 1 of 7)	intron (NM_018776, intron 1 of 7)	1114.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12319745-2	chr17	12319245	12320245	+	712.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357722)	promoter-TSS (NM_001357722)	892.0	NR_045290	224523.0	Mm.188855	NR_045290	ENSMUSG00000097350	4732491K20Rik	-	RIKEN cDNA 4732491K20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-62974452-1	chr8	62973952	62974952	+	712.0	f1_balb.idr	intron (NM_023689, intron 3 of 11)	Lx|LINE|L1	23107.0	NM_001361918	72902.0	Mm.334552	NM_023689	ENSMUSG00000054162	Spock3	2900045C01Rik|AI428471|mKIAA4039	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr7-43560899-2	chr7	43560399	43561399	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1471.0	NM_001008549	210104.0	Mm.333821	NM_001008549	ENSMUSG00000056592	Zfp658	-	zinc finger protein 658	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132420810-2	chr1	132420310	132421310	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172516, intron 1 of 12)	intron (NM_172516, intron 1 of 12)	3357.0	NM_172516	213452.0	Mm.257120	NM_172516	ENSMUSG00000042046	Dstyk	A930019K20Rik|C430014H23Rik|C820013G01|Ripk5	dual serine/threonine and tyrosine protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98139903-2	chr15	98139403	98140403	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170711, intron 3 of 3)	ORR1B1|LTR|ERVL-MaLR	5799.0	NM_030121	78541.0	Mm.200766	NM_030121	ENSMUSG00000048175	Asb8	4930539L19Rik|AI788835|C430011H06Rik	ankyrin repeat and SOCS box-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64794103-2	chr9	64793603	64794603	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	-16908.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-60977454-2	chr8	60976954	60977954	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173873, intron 1 of 12)	intron (NM_173873, intron 1 of 12)	5857.0	NM_173873	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145045294-2	chr7	145044794	145045794	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105369.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	0.0	6.5	0.5	0.0	3.0	0.0
Merged-chr5-129584643-2	chr5	129584143	129585143	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011846, intron 1 of 9)	CpG	474.0	NM_011846	23948.0	Mm.42047	NM_011846	ENSMUSG00000029436	Mmp17	MT4-MMP|MT4MMP|MTMMP4	matrix metallopeptidase 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45552995-2	chr17	45552495	45553495	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	-2705.0	NM_008690	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	1.0	0.0	0.5	1.0	0.0	0.5
Merged-chr4-139267365-2	chr4	139266865	139267865	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 4 of 9)	intron (NM_001037761, intron 4 of 9)	43343.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	0.0	14.0	0.0	11.0	9.5	5.0
Merged-chr17-26212827-2	chr17	26212327	26213327	+	712.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001206335, exon 13 of 13)	3' UTR (NM_001206335, exon 13 of 13)	9886.0	NM_001081069	50782.0	Mm.109840	NM_001081069	ENSMUSG00000024186	Rgs11	C78048	regulator of G-protein signaling 11	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr4-138001904-2	chr4	138001395	138002395	+	712.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	4070.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	29.5	31.5	29.0	10.0	9.5	22.0
Merged-chr7-128050894-2	chr7	128050394	128051394	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-11746.0	NM_001082960	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-161041099-2	chr2	161040599	161041599	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_126509, intron 4 of 35)	intron (NR_126509, intron 4 of 35)	67987.0	NM_173368	71389.0	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115422765-2	chr8	115422265	115423265	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	284129.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118346683-2	chr7	118346181	118347181	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	96879.0	NM_001362180	110058.0	Mm.156558	NM_138649	ENSMUSG00000058420	Syt17	Bk|sytXVII	synaptotagmin XVII	protein-coding	0.0	9.5	2.0	0.5	7.0	2.0
Merged-chr6-65145611-2	chr6	65145111	65146111	+	712.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019455)	promoter-TSS (NM_019455)	-881.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-4383032-2	chr10	4382532	4383532	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033466, intron 1 of 2)	intron (NM_001033466, intron 1 of 2)	4443.0	NM_001359811	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-89776317-1	chr10	89775817	89776817	+	712.0	f0_c57.idr	intron (NM_029166, intron 4 of 20)	intron (NM_029166, intron 4 of 20)	31326.0	NM_029166	75089.0	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	0.0	1.5	2.0	0.0	0.0	0.5
Merged-chr16-23234308-2	chr16	23233808	23234808	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 1 of 7)	intron (NM_001252505, intron 1 of 7)	8287.0	NM_001252505	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-17696445-3	chr13	17695972	17696972	+	712.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025479, intron 1 of 1)	intron (NM_025479, intron 1 of 1)	1059.0	NM_025479	66308.0	Mm.291109	NM_025479	ENSMUSG00000012429	Mplkip	2810021B07Rik|C330007M08Rik|Ttdn1	M-phase specific PLK1 intereacting protein	protein-coding	7.5	18.0	13.5	0.0	34.0	11.5
Merged-chr18-68301289-2	chr18	68300789	68301789	+	712.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153794)	promoter-TSS (NM_153794)	869.0	NM_001361003	67897.0	Mm.27544	NM_026440	ENSMUSG00000009535	Rnmt	2610002P10Rik|AI848273|Rg7mt1|mKIAA0398	RNA (guanine-7-) methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105716629-2	chr5	105716129	105717129	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	15819.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97768428-2	chr15	97767928	97768928	+	712.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144850)	promoter-TSS (NM_144850)	-762.0	NM_001357630	223864.0	Mm.24028	NM_144850	ENSMUSG00000022469	Rapgef3	2310016P22Rik|9330170P05Rik|Epac|Epac1	Rap guanine nucleotide exchange factor (GEF) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139494861-2	chr4	139494361	139495361	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35687.0	NM_183148	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	4.0	11.0	11.0	1.0	10.0	6.0
Merged-chr3-75861853-3	chr3	75861345	75862345	+	712.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	95104.0	NM_175193	73124.0	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127059111-2	chr10	127058611	127059611	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033262, intron 1 of 3)	intron (NM_001033262, intron 1 of 3)	1073.0	NM_001033262	216438.0	Mm.37892	NM_001033262	ENSMUSG00000040502	March9	AI608492|BC019560	membrane-associated ring finger (C3HC4) 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43266559-1	chr13	43266059	43267059	+	712.0	f0_balb.idr	intron (NM_001033399, intron 1 of 1)	L1_Mur3|LINE|L1	37613.0	NM_001033399	328232.0	Mm.441399	NM_001033399	ENSMUSG00000051335	Gfod1	9630032O13|AI850995	glucose-fructose oxidoreductase domain containing 1	protein-coding	2.0	0.0	0.0	4.0	0.0	2.0
Merged-chr4-154913743-2	chr4	154913243	154914243	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14334.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-16439174-2	chr9	16438674	16439674	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60943.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166957923-2	chr2	166957423	166958423	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_111895, intron 3 of 11)	B4A|SINE|B4	6794.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146121790-1	chr3	146121290	146122290	+	712.0	f0_balb.idr	promoter-TSS (NM_134160)	promoter-TSS (NM_134160)	-1.0	NM_134160	171166.0	Mm.114683	NM_134160	ENSMUSG00000036853	Mcoln3	6720490O21Rik|TRPML3|Va	mucolipin 3	protein-coding	0.0	0.0	0.0	13.5	0.0	0.0
Merged-chr5-31001187-2	chr5	31000693	31001693	+	712.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	32516.0	NM_053085	69852.0	Mm.57874	NM_053085	ENSMUSG00000006642	Tcf23	2010002O16Rik|Out|bHLHa24	transcription factor 23	protein-coding	13.5	14.5	6.5	10.5	3.0	0.0
Merged-chr11-114809725-2	chr11	114809225	114810225	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10801.0	NM_181749	217302.0	Mm.269127	NM_181749	ENSMUSG00000034677	Gpr142	PGR2	G protein-coupled receptor 142	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45011996-1	chr7	45011496	45012496	+	712.0	f1_balb.idr	TTS (NR_106021)	TTS (NR_106021)	491.0	NR_106021	102466218.0		NR_106021	ENSMUSG00000098839	Mir7054	Gm27557|mmu-mir-7054	microRNA 7054	ncRNA	0.0	0.0	3.0	0.5	0.0	7.0
Merged-chr12-16990775-2	chr12	16990275	16991275	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172574, intron 6 of 6)	intron (NM_172574, intron 6 of 6)	9343.0	NM_172574	217430.0	Mm.379451	NM_172574	ENSMUSG00000045679	Pqlc3	C78076|E030024M05Rik	PQ loop repeat containing	protein-coding	0.0	6.0	2.0	1.0	6.0	1.0
Merged-chr4-147338648-2	chr4	147338148	147339148	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	ID_B1|SINE|B4	162782.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-104749180-2	chr12	104748680	104749680	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_148948, intron 1 of 26)	intron (NM_148948, intron 1 of 26)	2772.0	NM_148948	192119.0	Mm.21135	NM_148948	ENSMUSG00000041415	Dicer1	1110006F08Rik|D12Ertd7e|mKIAA0928	dicer 1, ribonuclease type III	protein-coding	0.0	0.0	0.0	0.0	6.5	0.5
Merged-chr7-16877050-2	chr7	16876550	16877550	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081655, intron 1 of 3)	intron (NM_001081655, intron 1 of 3)	1733.0	NM_001081655	629378.0	Mm.491123	NM_001081655	ENSMUSG00000078794	Dact3	EG666671|naa-3	dishevelled-binding antagonist of beta-catenin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88204460-3	chr10	88203966	88204966	+	711.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026070, intron 2 of 6)	MERVL_2A-int|LTR|ERVL	3369.0	NM_027487	67282.0	Mm.208465	NM_026070	ENSMUSG00000020056	Washc3	2900091E11Rik|5730495F03Rik|Ccdc53	WASH complex subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76851852-4	chr14	76851318	76852318	+	711.875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	91687.0	NR_153763	73883.0	Mm.489041	NR_153763		4930431P22Rik	-	RIKEN cDNA 4930431P22 gene	ncRNA	12.0	11.0	10.5	17.5	11.0	5.5
Merged-chr13-111238080-2	chr13	111237580	111238580	+	711.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8649.0	NR_045908	73129.0	Mm.417826	NR_045908	ENSMUSG00000114824	3110015C05Rik	-	RIKEN cDNA 3110015C05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-142868000-2	chr6	142867500	142868500	+	711.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011374, intron 3 of 4)	intron (NM_011374, intron 3 of 4)	53769.0	NR_045707	665037.0	Mm.401493	NR_045707	ENSMUSG00000072683	Gm7457	EG665037	predicted gene 7457	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141382508-2	chr4	141382008	141383008	+	711.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001085513, exon 5 of 7)	exon (NM_001085513, exon 5 of 7)	14316.0	NM_001085513	277743.0	Mm.294614	NM_001085513	ENSMUSG00000006218	Fam131c	Gm693	family with sequence similarity 131, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116033119-2	chr7	116032619	116033619	+	711.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NR_152104)	TTS (NR_152104)	1140.0	NR_152104	68469.0	Mm.435492	NR_152104		Sox6os	1110006G14Rik	SRY (sex determining region Y)-box 6, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80942187-2	chr10	80941687	80942687	+	711.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12096.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153488359-2	chr1	153487859	153488859	+	711.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007842)	promoter-TSS (NM_007842)	-699.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85446361-2	chr12	85445861	85446861	+	711.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-27529.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64210036-3	chr5	64209522	64210522	+	711.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-20335.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134613893-3	chr5	134613356	134614356	+	711.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020044, intron 1 of 12)	intron (NM_020044, intron 1 of 12)	1169.0	NM_022964	56743.0	Mm.391375	NM_020044	ENSMUSG00000040751	Lat2	AW125574|LAB|NTAL|WSCR5|Wbscr15|Wbscr5	linker for activation of T cells family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155821209-3	chr4	155820696	155821696	+	711.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207678, intron 8 of 10)	B2_Mm1a|SINE|B2	8707.0	NM_207678	56036.0	Mm.23492	NM_018856	ENSMUSG00000029068	Ccnl2	1700010A01Rik|1810019L15Rik|2010319M22Rik|AA409936|AW261738|Ania-6b|HCLA-150|Pcee|SB138	cyclin L2	protein-coding	1.0	20.0	5.0	0.5	2.5	10.5
Merged-chr18-42261444-2	chr18	42260944	42261944	+	711.8000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_134137, intron 1 of 31)	intron (NM_134137, intron 1 of 31)	627.0	NM_134137	107045.0	Mm.312170	NM_134137	ENSMUSG00000024493	Lars	2310045K21Rik|3110009L02Rik|AW536573|mKIAA1352	leucyl-tRNA synthetase	protein-coding	4.5	40.0	24.5	4.0	47.5	18.0
Merged-chr11-120057939-3	chr11	120057424	120058424	+	711.799988	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-10779.0	NM_007377	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	14.5	72.5	16.0	0.0	9.5	9.0
Merged-chr13-65240089-2	chr13	65239589	65240589	+	711.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-34373.0	NM_175290	97895.0	Mm.315815	NM_175290	ENSMUSG00000032999	Nlrp4f	C330026N02Rik|C86045|Nalp-kappa|Nalp4f	NLR family, pyrin domain containing 4F	protein-coding	0.0	4.5	6.5	2.5	7.5	6.5
Merged-chr11-21154649-2	chr11	21154145	21155145	+	711.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	55776.0	NR_151470	108167888.0		NR_151470		2610024D14Rik	-	ATP synthase subunit g, mitochondrial pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46525887-4	chr17	46525417	46526417	+	711.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081335, exon 14 of 41)	exon (NM_001081335, exon 14 of 41)	20471.0	NM_001081335	78309.0	Mm.329076	NM_001081335	ENSMUSG00000040327	Cul9	1810035I07Rik|Cul-9|Parc|mKIAA0708	cullin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111535415-2	chr12	111534915	111535915	+	711.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2686.0	NM_178041	217869.0	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32598387-2	chr11	32597921	32598921	+	711.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 8 of 18)	intron (NM_009288, intron 8 of 18)	-44134.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	2.5	1.0	2.0	0.0	0.5	2.0
Merged-chr1-7087273-2	chr1	7086773	7087773	+	711.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1647.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45406700-5	chr7	45406180	45407180	+	711.700012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010596, exon 1 of 2)	exon (NM_010596, exon 1 of 2)	720.0	NM_010596	16495.0	Mm.12955	NM_010596	ENSMUSG00000038201	Kcna7	Kv1.7	potassium voltage-gated channel, shaker-related subfamily, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-39192479-4	chr16	39192010	39193010	+	711.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3560.0	NR_153800	102640746.0		NR_153800		Gm36742	-	predicted gene, 36742	ncRNA	4.0	14.5	21.0	5.5	5.5	5.5
Merged-chr6-115288424-3	chr6	115287927	115288927	+	711.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-36222.0	NM_001356406	110595.0	Mm.255607	NM_080639	ENSMUSG00000030317	Timp4	Timp-4	tissue inhibitor of metalloproteinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116217303-3	chr9	116216775	116217775	+	711.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28095.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	0.0	1.5	0.0	2.0	7.0	1.5
Merged-chr2-35464723-3	chr2	35464216	35465216	+	711.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3267.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59666604-3	chr13	59666111	59667111	+	711.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035122, intron 1 of 9)	intron (NM_001035122, intron 1 of 9)	9173.0	NM_001035122	105348.0	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-30177436-2	chr6	30176936	30177936	+	711.666687	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_038124, exon 1 of 1)	non-coding (NR_038124, exon 1 of 1)	813.0	NR_038124	100463519.0	Mm.361139	NR_038124		BB283400	BF465573|Rncr4	expressed sequence BB283400	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25600780-2	chr8	25600280	25601280	+	711.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308481)	promoter-TSS (NM_001308481)	-821.0	NM_001308481	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-114665879-3	chr4	114665366	114666366	+	711.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-155854.0	NR_033617	433746.0	Mm.388908	NR_033617	ENSMUSG00000055198	Gm12830	-	predicted gene 12830	ncRNA	2.5	1.0	1.0	1.0	2.0	1.0
Merged-chr2-148082488-1	chr2	148081988	148082988	+	711.666687	f0_c57.idr	Intergenic	Intergenic	-35519.0	NM_010446	15376.0	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	1.0	1.5	1.0	1.0	0.5	0.0
Merged-chr16-24027557-3	chr16	24027028	24028028	+	711.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38676.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20165503-2	chr13	20165003	20166003	+	711.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	74996.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.0	10.0	5.0	0.0	3.5	1.0
Merged-chr7-141008544-2	chr7	141008044	141009044	+	711.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2200.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-37257300-2	chr12	37256803	37257803	+	711.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_178767, intron 3 of 12)	intron (NM_178767, intron 3 of 12)	15664.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	5.0	8.5	0.0	0.0	0.0	4.5
Merged-chr7-116460580-2	chr7	116460080	116461080	+	711.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-17122.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95887727-3	chr13	95887208	95888208	+	711.633362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	4214.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	55.5	74.5	70.0	57.0	65.0	58.5
Merged-chr5-124093841-2	chr5	124093341	124094341	+	711.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_019875, intron 1 of 11)	intron (NM_019875, intron 1 of 11)	1957.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80473247-2	chr18	80472747	80473747	+	711.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1-int|LTR|ERVL-MaLR	-3580.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	1.0	0.0	0.0	0.0	1.5	2.5
Merged-chr14-46742577-3	chr14	46742073	46743073	+	711.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-17968.0	NM_001360041	72391.0	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding	2.0	27.5	11.0	27.0	25.0	10.0
Merged-chr17-5688363-3	chr17	5687862	5688862	+	711.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 3 of 8)	(CA)n|Simple_repeat|Simple_repeat	-110295.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53742158-2	chr18	53741658	53742658	+	711.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178686, intron 2 of 20)	intron (NM_178686, intron 2 of 20)	2389.0	NM_178686	225523.0	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding	0.0	0.0	5.5	0.0	9.0	2.5
Merged-chr12-93094933-2	chr12	93094433	93095433	+	711.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	349890.0	NR_126436	75295.0	Mm.243878	NR_126436	ENSMUSG00000113164	4930559C10Rik	-	RIKEN cDNA 4930559C10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23495909-1	chr18	23495409	23496409	+	711.5	f0_balb.idr	intron (NM_001361217, intron 2 of 20)	intron (NM_001361217, intron 2 of 20)	-1573.0	NM_001361215	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	0.0	0.0	8.5	0.5	0.0	7.5
Merged-chr16-28593346-3	chr16	28592833	28593833	+	711.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010199, intron 2 of 5)	intron (NM_010199, intron 2 of 5)	6710.0	NR_030463	751543.0		NR_030463	ENSMUSG00000076064	Mir690	Mirn690|mir-690|mmu-mir-690	microRNA 690	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125349356-2	chr5	125348856	125349856	+	711.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8262.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	10.5	17.0	9.5	15.5	26.0	12.5
Merged-chr8-52591752-2	chr8	52591252	52592252	+	711.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	235141.0	NR_151738	330767.0	Mm.246790	NR_151738	ENSMUSG00000110013	1190028D05Rik	-	RIKEN cDNA 1190028D05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23877865-2	chr18	23877365	23878365	+	711.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	73895.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82927069-2	chr18	82926569	82927569	+	711.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177464, intron 1 of 5)	intron (NM_001177464, intron 1 of 5)	-6509.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72870425-2	chr5	72869925	72870925	+	711.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1977.0	NM_001113460	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0.0	2.5	0.5	0.0	2.5	0.5
Merged-chr5-31047143-3	chr5	31046645	31047645	+	711.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360022, intron 2 of 17)	intron (NM_001360022, intron 2 of 17)	934.0	NM_177870	330064.0	Mm.205463	NM_177870	ENSMUSG00000006641	Slc5a6	E430023I20	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	protein-coding	4.0	2.0	6.0	2.5	0.0	6.0
Merged-chr5-31495214-2	chr5	31494714	31495714	+	711.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133756, intron 1 of 13)	L2b|LINE|L2	473.0	NM_133756	74254.0	Mm.348649	NM_133756	ENSMUSG00000064037	Gpn1	2410004J02Rik|AI449615|MBDIN|NTPBP|Xab1	GPN-loop GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-5833628-2	chr9	5833128	5834128	+	711.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-334858.0	NM_001357398	71785.0	Mm.390122	NM_027924	ENSMUSG00000032006	Pdgfd	1110003I09Rik	platelet-derived growth factor, D polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-131886725-2	chr3	131886225	131887225	+	711.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-198567.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	3.0	0.0	0.0	0.0	0.0	1.5
Merged-chr15-103500424-2	chr15	103499924	103500924	+	711.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2610.0	NM_008800	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93803083-2	chr1	93802583	93803583	+	711.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025454)	promoter-TSS (NM_025454)	-882.0	NM_025454	66262.0	Mm.64065	NM_025454	ENSMUSG00000026283	Ing5	1700001C14Rik|1700027H23Rik|1810018M11Rik|AI225768	inhibitor of growth family, member 5	protein-coding	4.5	8.0	4.5	4.5	16.5	9.5
Merged-chr2-129550970-2	chr2	129550470	129551470	+	711.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14368.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	0.0	2.5	0.0	3.5	2.5	0.0
Merged-chr5-140140357-2	chr5	140139857	140140857	+	711.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359027, intron 1 of 6)	intron (NM_001359027, intron 1 of 6)	34561.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51497563-2	chr3	51497063	51498063	+	711.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR40|LTR|ERVK	13597.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51066593-2	chr13	51066093	51067093	+	711.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	34134.0	NR_029463	77428.0	Mm.405630	NR_029463		9430083A17Rik	-	RIKEN cDNA 9430083A17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77960545-2	chr10	77960045	77961045	+	711.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 4 of 33)	L1MDa|LINE|L1	9327.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121536931-3	chr3	121536421	121537421	+	711.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4577.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116602813-2	chr7	116602313	116603313	+	711.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C-int|LTR|ERVK	98444.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16316823-2	chr7	16316323	16317323	+	711.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133234, intron 3 of 3)	intron (NM_133234, intron 3 of 3)	7240.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	1.0	0.0	3.0	0.5	0.0	6.5
Merged-chr2-151002357-2	chr2	151001857	151002857	+	711.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207204, intron 1 of 23)	MTC|LTR|ERVL-MaLR	7041.0	NM_207204	78177.0	Mm.120911	NM_207204	ENSMUSG00000068115	Ninl	4930519N13Rik|Gm1004|Gm1634|mKIAA0980	ninein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27407899-2	chr3	27407399	27408399	+	711.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36548.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-22452415-2	chr6	22451915	22452915	+	711.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-96334.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84988150-4	chr2	84987662	84988662	+	711.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016914)	promoter-TSS (NM_016914)	-53.0	NM_016914	53856.0	Mm.19943	NM_016914	ENSMUSG00000027072	Prg3	MBP2|MBPH	proteoglycan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-48944973-2	chr7	48944473	48945473	+	711.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-14100.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94761535-2	chr11	94761035	94762035	+	711.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001105561)	promoter-TSS (NM_001105561)	-353.0	NM_001105561	217122.0	Mm.24063	NM_183153		Gm11545	A430060F13Rik|C86086	predicted gene 11545	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-54559564-2	chr9	54559064	54560064	+	711.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019686, intron 1 of 5)	intron (NM_019686, intron 1 of 5)	515.0	NM_019686	56506.0	Mm.42192	NM_019686	ENSMUSG00000037493	Cib2	2810434I23Rik|AI449053	calcium and integrin binding family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75227634-2	chr14	75227134	75228134	+	711.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 16 of 16)	intron (NM_008879, intron 16 of 16)	-14653.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-78830170-2	chr18	78829682	78830682	+	711.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_053099, intron 4 of 5)	Tigger7|DNA|TcMar-Tigger	-233232.0	NM_207651	27411.0	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	1.5	2.0	0.0	1.5	3.0	0.5
Merged-chr15-75998140-2	chr15	75997640	75998640	+	711.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_177922, exon 11 of 14)	exon (NM_177922, exon 11 of 14)	4371.0	NM_177922	332110.0	Mm.40843	NM_177922	ENSMUSG00000063704	Mapk15	BC048082	mitogen-activated protein kinase 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-41267958-2	chr5	41267459	41268459	+	711.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	439732.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	2.5	1.5	7.0	3.5	0.0	9.5
Merged-chr2-91527088-2	chr2	91526588	91527588	+	711.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001165989, intron 1 of 43)	CpG	326.0	NM_001165989	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-92142805-2	chr10	92142318	92143318	+	711.5	f0_balb.idr|f1_balb.idr	intron (NR_028262, intron 3 of 12)	intron (NR_028262, intron 3 of 12)	-5595.0	NR_037219	100526517.0		NR_037219	ENSMUSG00000093227	Mir1251	mir-1251|mmu-mir-1251	microRNA 1251	ncRNA	0.0	8.0	5.0	4.5	0.0	3.5
Merged-chr13-55183352-2	chr13	55182852	55183852	+	711.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-26430.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0.0	3.0	0.5	0.5	0.0	2.5
Merged-chr1-136117496-2	chr1	136116996	136117996	+	711.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081023, intron 40 of 43)	intron (NM_001081023, intron 40 of 43)	13687.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153753268-2	chr1	153752768	153753768	+	711.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011882, intron 3 of 8)	intron (NM_011882, intron 3 of 8)	3842.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57902938-2	chr15	57902438	57903438	+	711.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9261.0	NM_001081396	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-89303525-2	chr11	89303026	89304026	+	711.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008711)	promoter-TSS (NM_008711)	-967.0	NM_008711	18121.0	Mm.135266	NM_008711	ENSMUSG00000048616	Nog	-	noggin	protein-coding	0.0	0.0	0.0	0.0	0.5	1.0
Merged-chr5-143434618-4	chr5	143434095	143435095	+	711.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29898.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103343415-4	chr14	103342862	103343862	+	711.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207215, intron 1 of 84)	intron (NM_207215, intron 1 of 84)	3438.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5202058-3	chr17	5201557	5202557	+	711.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	206983.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45458237-3	chr13	45457734	45458734	+	711.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	-49210.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	1.0	6.5	2.5	4.0	1.5	7.0
Merged-chr11-96975664-2	chr11	96975164	96976164	+	711.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_030220, intron 1 of 6)	intron (NM_030220, intron 1 of 6)	2024.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59741800-2	chr13	59741318	59742318	+	711.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8168.0	NR_045977	75223.0	Mm.444771	NR_045977	ENSMUSG00000097502	4930528D03Rik	-	RIKEN cDNA 4930528D03 gene	ncRNA	4.0	0.0	1.5	0.0	1.0	3.0
Merged-chr1-191194794-4	chr1	191194283	191195283	+	711.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11450.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-53668606-2	chr9	53668106	53669106	+	711.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1099.0	NM_027807	75717.0	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20724597-3	chr16	20724097	20725097	+	711.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001289896, exon 6 of 6)	3' UTR (NM_001289896, exon 6 of 6)	6001.0	NM_001289896	21832.0	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38002455-3	chr15	38001984	38002984	+	711.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001112721, intron 33 of 58)	intron (NM_001112721, intron 33 of 58)	-41429.0	NM_199476	382985.0	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4210464-3	chr16	4209960	4210960	+	711.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025432, intron 1 of 30)	intron (NM_001025432, intron 1 of 30)	2944.0	NM_001025432	12914.0	Mm.132238	NM_001025432	ENSMUSG00000022521	Crebbp	AW558298|CBP|CBP/p300|KAT3A|p300/CBP	CREB binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-105176389-3	chr14	105175890	105176890	+	711.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134077, intron 1 of 20)	intron (NM_134077, intron 1 of 20)	937.0	NM_134077	74213.0	Mm.474531	NM_134077	ENSMUSG00000022119	Rbm26	1700009P03Rik|AI447318|C230097K14Rik|C86225|MLZ-393|Pro1777|Se70-2	RNA binding motif protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26685299-1	chr8	26684799	26685799	+	711.333313	f1_c57bl6.idr	Intergenic	MER58B|DNA|hAT-Charlie	139124.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	15.0	28.0	20.0	10.0	11.5	6.5
Merged-chr11-23023339-3	chr11	23022847	23023847	+	711.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028672, intron 3 of 3)	intron (NM_028672, intron 3 of 3)	9960.0	NM_028672	73873.0	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23506042-3	chr16	23505546	23506546	+	711.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359083, intron 2 of 10)	intron (NM_001359083, intron 2 of 10)	14769.0	NM_008555	17174.0	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140815221-3	chr5	140814720	140815720	+	711.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 1 of 3)	intron (NM_010302, intron 1 of 3)	15211.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31165159-4	chr2	31164666	31165666	+	711.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178760, intron 1 of 17)	L1MEd|LINE|L1	12850.0	NM_178760	277463.0	Mm.236074	NM_178760	ENSMUSG00000000194	Gpr107	9930033D15Rik|AI790205|C530034M11|mKIAA1624	G protein-coupled receptor 107	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-111327086-4	chr11	111326598	111327598	+	711.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	260934.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95045404-3	chr4	95044914	95045914	+	711.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6808.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11624447-2	chr11	11623947	11624947	+	711.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305143, intron 2 of 3)	intron (NM_001305143, intron 2 of 3)	3391.0	NM_001305143	102631730.0	Mm.159430	NM_001305143	ENSMUSG00000062511	4930512M02Rik	-	RIKEN cDNA 4930512M02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51821727-2	chr11	51821227	51822227	+	711.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357588, intron 10 of 12)	intron (NM_001357588, intron 10 of 12)	35754.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55451451-2	chr11	55450951	55451951	+	711.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 2 of 3)	intron (NM_009720, intron 2 of 3)	9757.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80395256-2	chr10	80394756	80395756	+	711.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_013595, intron 2 of 6)	intron (NM_013595, intron 2 of 6)	4275.0	NM_013595	17192.0	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92935663-4	chr1	92935164	92936164	+	711.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015525, intron 1 of 1)	intron (NR_015525, intron 1 of 1)	1256.0	NM_011796	23830.0	Mm.294315	NM_011796	ENSMUSG00000026270	Capn10	AW049679|Capn8|mKIAA1845	calpain 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97297806-2	chr7	97297306	97298306	+	711.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 3 of 9)	intron (NM_001162477, intron 3 of 9)	28158.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15829650-3	chr17	15829166	15830166	+	711.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3080.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-159607769-3	chr2	159607268	159608268	+	711.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-339573.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13663452-3	chr9	13662961	13663961	+	711.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173776, intron 1 of 3)	intron (NM_173776, intron 1 of 3)	1001.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8749584-3	chr17	8749100	8750100	+	711.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290707, intron 1 of 22)	intron (NM_001290707, intron 1 of 22)	-52145.0	NM_011866	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-51090795-4	chr2	51090316	51091316	+	711.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58295.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-73129498-3	chr11	73128886	73129886	+	711.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361245, intron 21 of 30)	intron (NM_001361245, intron 21 of 30)	8908.0	NM_010353	14841.0	Mm.42045	NM_010353	ENSMUSG00000050107	Haspin	Gsg2	histone H3 associated protein kinase	protein-coding	8.5	31.0	20.0	9.0	6.5	5.0
Merged-chr6-24531232-3	chr6	24530729	24531729	+	711.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080847, intron 1 of 9)	intron (NM_080847, intron 1 of 9)	3085.0	NM_080847	78910.0	Mm.160150	NM_080847	ENSMUSG00000029685	Asb15	4930400E23Rik|Asb-15	ankyrin repeat and SOCS box-containing 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-92059128-2	chr2	92058628	92059628	+	711.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-34958.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145517161-2	chr6	145516657	145517657	+	711.166626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-82232.0	NM_028742	74071.0	Mm.441497	NM_028742	ENSMUSG00000054966	Lmntd1	4933403M22Rik|AI482300|Ifltd1|Lmna-rs1|Lmna1	lamin tail domain containing 1	protein-coding	2.5	2.0	2.5	2.0	8.5	2.0
Merged-chr1-138157888-2	chr1	138157388	138158388	+	711.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	17238.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-53713327-2	chr6	53712827	53713827	+	711.166626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	107498.0	NM_025817	66873.0	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr13-52604667-2	chr13	52604167	52605167	+	711.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 1 of 13)	RMER15|LTR|ERVL	7785.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-28064291-2	chr5	28063786	28064786	+	711.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7126.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	1.0	0.0	0.5	1.0	13.0	0.0
Merged-chr4-130264980-3	chr4	130264476	130265476	+	711.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356465, intron 2 of 9)	intron (NM_001356465, intron 2 of 9)	6458.0	NM_001356465	230779.0	Mm.45132	NM_172702	ENSMUSG00000023232	Serinc2	2310004K20Rik|AW121759|FKSG84|TDE2|Tde2l	serine incorporator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5559892-2	chr17	5559392	5560392	+	711.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	67292.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4124485-2	chr7	4123985	4124985	+	711.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001454, intron 2 of 12)	intron (NM_001001454, intron 2 of 12)	-3757.0	NR_033568	77323.0	Mm.378791	NR_033568	ENSMUSG00000086155	9430041J12Rik	-	RIKEN cDNA 9430041J12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59219194-4	chr11	59218695	59219695	+	711.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007476, intron 1 of 4)	B3A|SINE|B2	8967.0	NM_001130408	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	6.0	25.5	19.0	10.5	19.0	19.0
Merged-chr12-103368342-4	chr12	103367811	103368811	+	711.041687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8583.0	NR_033587	68149.0	Mm.127378	NM_026580	ENSMUSG00000021203	Otub2	2010015L18Rik|4930586I02Rik|AI413508|AW557219|OTB2|OTU2	OTU domain, ubiquitin aldehyde binding 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-130786310-2	chr3	130785810	130786810	+	711.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-55912.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36793065-2	chr1	36792565	36793565	+	711.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_018872, exon 41 of 41)	exon (NM_018872, exon 41 of 41)	14081.0	NM_001289612	22637.0	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97135484-2	chr15	97134984	97135984	+	711.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31760.0	NR_155278	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29859080-2	chr2	29858580	29859580	+	711.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10414.0	NM_207298	99151.0	Mm.296336	NM_207298	ENSMUSG00000039787	Cercam	2600006K01Rik|AL024097|Ceecam1	cerebral endothelial cell adhesion molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-51459190-1	chr1	51458690	51459690	+	711.0	f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	19209.0	NM_001310548	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161804500-1	chr1	161804000	161805000	+	711.0	f1_balb.idr	Intergenic	Intergenic	-16005.0	NM_010177	14103.0	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	0.0	1.5	4.0	4.0	2.0	1.5
Merged-chr1-45947968-3	chr1	45947464	45948464	+	711.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22370.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-65171554-2	chr1	65171054	65172054	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010497, intron 2 of 8)	intron (NM_010497, intron 2 of 8)	7588.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104628629-1	chr9	104628129	104629129	+	711.0	f1_c57bl6.idr	intron (NM_028719, intron 1 of 15)	B4A|SINE|B4	59146.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	51.0	126.5	55.5	86.5	121.0	108.5
Merged-chr2-32687871-2	chr2	32687371	32688371	+	711.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106168)	promoter-TSS (NR_106168)	-105.0	NR_106168	102465885.0		NR_106168	ENSMUSG00000098972	Mir8093	Gm27548|mmu-mir-8093	microRNA 8093	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122747049-2	chr10	122746549	122747549	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	67734.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25006654-1	chr17	25006154	25007154	+	711.0	f0_balb.idr	intron (NM_020608, intron 2 of 20)	intron (NM_020608, intron 2 of 20)	8576.0	NM_020608	57354.0	Mm.328854	NM_020608	ENSMUSG00000038002	Cramp1l	5830477H08Rik|AI256853|AI790734|Cramp1|Tce4|mKIAA1426	cramped chromatin regulator homolog 1	protein-coding	0.0	3.5	3.0	7.5	4.0	6.0
Merged-chr15-78772592-4	chr15	78772081	78773081	+	711.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008595, intron 1 of 7)	intron (NM_008595, intron 1 of 7)	864.0	NM_008595	17305.0	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	31.5	25.5	43.5	25.5	26.5	40.5
Merged-chr16-10875733-2	chr16	10875233	10876233	+	711.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39064.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59772970-2	chr13	59772470	59773470	+	711.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015349, exon 2 of 2)	non-coding (NR_015349, exon 2 of 2)	3004.0	NR_015349	13996.0	Mm.490435	NR_015349		Etohd2	AW491659	ethanol decreased 2	ncRNA	3.0	0.0	0.0	0.5	0.0	0.0
Merged-chr12-3901470-2	chr12	3900970	3901970	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 11 of 17)	intron (NM_153743, intron 11 of 17)	9726.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64222456-2	chr15	64221956	64222956	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	90217.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	10.0	6.0	3.0	7.0	1.5	4.5
Merged-chr4-148679862-1	chr4	148679362	148680362	+	711.0	f1_balb.idr	Intergenic	Intergenic	36545.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	2.0	0.0	2.5	3.0	0.0	2.0
Merged-chr18-23955885-2	chr18	23955385	23956385	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027007, intron 1 of 3)	B1_Mur2|SINE|Alu	1197.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120606691-2	chr5	120606191	120607191	+	711.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029408, exon 5 of 5)	exon (NM_029408, exon 5 of 5)	5898.0	NM_029096	100764.0	Mm.9654	NM_029096	ENSMUSG00000029600	Rita1	1110008J03Rik|AI853657|C86297|Rita	RBPJ interacting and tubulin associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12435893-2	chr13	12435393	12436393	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144835, intron 43 of 44)	intron (NM_144835, intron 43 of 44)	23423.0	NM_001291055	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-8470256-2	chr16	8469756	8470756	+	711.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146247)	promoter-TSS (NM_146247)	-557.0	NM_146247	239706.0	Mm.214953	NM_146247	ENSMUSG00000039345	Mettl22	-	methyltransferase like 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124570281-2	chr6	124569781	124570781	+	711.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113356)	promoter-TSS (NM_001113356)	-149.0	NM_001113356	667277.0	Mm.481484	NM_001113356	ENSMUSG00000098470	C1rb	Gm8551|mC1rB	complement component 1, r subcomponent B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59847332-2	chr11	59846832	59847832	+	711.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134029)	promoter-TSS (NM_134029)	-741.0	NM_134029	103850.0	Mm.41761	NM_134029	ENSMUSG00000032615	Nt5m	2010013E09Rik|AI846937|dNT-2	5',3'-nucleotidase, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34178365-2	chr13	34177898	34178898	+	711.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001101430)	TTS (NM_001101430)	15434.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	1.0	2.5	6.0	2.0	0.0	3.5
Merged-chr4-68095170-2	chr4	68094670	68095670	+	711.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	226791.0	NR_151548	102633975.0		NR_151548		Gm12911	-	predicted gene 12911	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27001189-2	chr17	27000689	27001689	+	711.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16846.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79993584-2	chr10	79993084	79994084	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007725, intron 6 of 6)	intron (NM_007725, intron 6 of 6)	-4024.0	NM_001347081	27403.0	Mm.103351	NM_013850	ENSMUSG00000035722	Abca7	ABCX|Abc51	ATP-binding cassette, sub-family A (ABC1), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120289707-2	chr14	120289207	120290207	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	14038.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	6.5	15.5	11.0	8.0	9.0	5.0
Merged-chr11-117655114-1	chr11	117654614	117655614	+	711.0	f0_balb.idr	intron (NM_198022, intron 1 of 21)	CpG	825.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55388289-2	chr12	55387789	55388789	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310583, intron 1 of 6)	PB1D10|SINE|Alu	4067.0	NM_001310583	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49186568-2	chr7	49186068	49187068	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	MIRb|SINE|MIR	-24410.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-52743033-1	chr5	52742533	52743533	+	711.0	f1_c57bl6.idr	intron (NM_025951, intron 1 of 9)	intron (NM_025951, intron 1 of 9)	1459.0	NM_025951	67073.0	Mm.248647	NM_025951	ENSMUSG00000029186	Pi4k2b	2610042N09Rik|4933409G22Rik	phosphatidylinositol 4-kinase type 2 beta	protein-coding	5.0	15.0	24.0	16.5	64.5	40.5
Merged-chr9-96503498-3	chr9	96502998	96503998	+	711.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24823.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121379054-2	chr10	121378554	121379554	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 6 of 13)	intron (NM_029364, intron 6 of 13)	13964.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120064662-1	chr10	120064162	120065162	+	711.0	f0_balb.idr	intron (NM_001358809, intron 22 of 23)	intron (NM_001358809, intron 22 of 23)	48303.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	1.0	3.0	1.5	1.5	0.0	2.0
Merged-chr5-142814305-2	chr5	142813805	142814805	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178242, intron 2 of 15)	intron (NM_178242, intron 2 of 15)	3082.0	NM_178242	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-119500112-1	chr6	119499612	119500612	+	711.0	f0_balb.idr	intron (NM_009525, intron 1 of 4)	intron (NM_009525, intron 1 of 4)	20444.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	2.5	0.0	0.0	1.0	0.0	0.0
Merged-chr19-4233072-2	chr19	4232572	4233572	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_132280, intron 2 of 2)	intron (NR_132280, intron 2 of 2)	657.0	NR_132280	69745.0	Mm.32518	NM_027196	ENSMUSG00000024854	Pold4	2410012M21Rik|AI463381|AW060307|Polds|p12	polymerase (DNA-directed), delta 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99974605-2	chr12	99974097	99975097	+	711.0	f0_balb.idr|f0_c57.idr	intron (NM_001164426, intron 2 of 2)	L1M4|LINE|L1	10098.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64321763-1	chr5	64321263	64322263	+	711.0	f0_balb.idr	intron (NM_001289514, intron 13 of 18)	intron (NM_001289514, intron 13 of 18)	91406.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	14.0	14.5	5.0	9.0	5.0	5.0
Merged-chr14-54553578-2	chr14	54553078	54554078	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145462, intron 1 of 9)	intron (NM_145462, intron 1 of 9)	783.0	NM_145462	219072.0	Mm.202152	NM_145462	ENSMUSG00000022177	Haus4	9430093H08Rik|AU016300|D14Ertd500e	HAUS augmin-like complex, subunit 4	protein-coding	30.0	45.0	46.0	23.0	20.0	37.5
Merged-chr13-59668592-2	chr13	59668092	59669092	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035122, intron 1 of 9)	intron (NM_001035122, intron 1 of 9)	7192.0	NM_001035122	105348.0	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10060279-2	chr17	10059779	10060779	+	711.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	259082.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-32397240-2	chr6	32396740	32397740	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-113901.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	4.0	4.5	6.0	5.0	1.5	0.0
Merged-chr14-78678080-1	chr14	78677580	78678580	+	711.0	f0_balb.idr	intron (NM_001081336, intron 2 of 29)	HAL1|LINE|L1	-33629.0	NR_104044	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96639264-2	chr15	96638764	96639764	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166458, intron 1 of 15)	MIRb|SINE|MIR	2698.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106769965-1	chr9	106769465	106770465	+	711.0	f0_balb.idr	intron (NM_030730, intron 1 of 21)	intron (NM_030730, intron 1 of 21)	19248.0	NM_030730	81000.0	Mm.246689	NM_030730	ENSMUSG00000040661	Rad54l2	Arip4|D130058C05|G630026H09Rik|Srisnf2l	RAD54 like 2 (S. cerevisiae)	protein-coding	2.0	2.0	2.0	0.0	6.5	1.0
Merged-chr8-24440557-2	chr8	24440057	24441057	+	711.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1611.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21837818-4	chr16	21837321	21838321	+	711.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43474.0	NR_037957	100043489.0	Mm.326535	NR_037957	ENSMUSG00000097290	1300002E11Rik	1500026P21Rik	RIKEN cDNA 1300002E11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10946491-2	chr19	10945991	10946991	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023731, intron 1 of 3)	intron (NM_023731, intron 1 of 3)	2775.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92914087-2	chr1	92913587	92914587	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181405, intron 1 of 10)	intron (NM_181405, intron 1 of 10)	3262.0	NM_181405	108657.0	Mm.200971	NM_181405	ENSMUSG00000026269	Rnpepl1	1110014H17Rik|AI894167	arginyl aminopeptidase (aminopeptidase B)-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97295529-2	chr6	97294991	97295991	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 22 of 23)	intron (NM_145148, intron 22 of 23)	-42711.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	15.0	34.0	19.0	14.5	26.5	11.5
Merged-chr19-4083896-2	chr19	4083396	4084396	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160252, intron 1 of 5)	intron (NM_001160252, intron 1 of 5)	377.0	NM_013878	29866.0	Mm.46268	NM_013878	ENSMUSG00000024857	Cabp2	-	calcium binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-66063944-2	chr4	66063444	66064444	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019514, intron 3 of 21)	intron (NM_019514, intron 3 of 21)	340539.0	NM_019514	56079.0	Mm.445312	NM_019514	ENSMUSG00000028373	Astn2	1d8|Astnl|bM452J22.1	astrotactin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123855914-2	chr9	123855414	123856414	+	711.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011798, exon 2 of 2)	exon (NM_011798, exon 2 of 2)	-4015.0	NM_001110253	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87433627-2	chr16	87433127	87434127	+	711.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016924, exon 5 of 5)	3' UTR (NM_016924, exon 5 of 5)	-1021.0	NM_001081068	78913.0	Mm.249005	NM_001081068	ENSMUSG00000052299	Ltn1	4930528H02Rik|AV266914|C87237|Listerin|Rnf160|Zfp294	listerin E3 ubiquitin protein ligase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82065706-2	chr15	82065206	82066206	+	711.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001166475, exon 2 of 2)	exon (NM_001166475, exon 2 of 2)	-4411.0	NM_028897	74369.0	Mm.289351	NM_028897	ENSMUSG00000068117	Mei1	4932408F18Rik|mei1	meiotic double-stranded break formation protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53342321-2	chr15	53341821	53342821	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	3862.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115339120-4	chr5	115338614	115339614	+	710.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029645, intron 1 of 2)	B3A|SINE|B2	2047.0	NM_029645	384281.0	Mm.229308	NM_029645	ENSMUSG00000029536	Gatc	2010003O18Rik	glutamyl-tRNA(Gln) amidotransferase, subunit C	protein-coding	6.0	18.0	8.0	2.0	2.0	9.5
Merged-chr11-49728051-3	chr11	49727554	49728554	+	710.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15332.0	NM_212484	104625.0	Mm.247113	NM_212484	ENSMUSG00000020362	Cnot6	CCR4	CCR4-NOT transcription complex, subunit 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-62627249-3	chr13	62626755	62627755	+	710.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3073.0	NM_173381	211378.0	Mm.247448	NM_173381	ENSMUSG00000072066	6720489N17Rik	9330128I06	RIKEN cDNA 6720489N17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-65453670-3	chr6	65453162	65454162	+	710.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175524, intron 4 of 5)	intron (NM_175524, intron 4 of 5)	72368.0	NM_175524	243407.0	Mm.389758	NM_175524	ENSMUSG00000029917	C130060K24Rik	-	RIKEN cDNA C130060K24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120197010-3	chr6	120196486	120197486	+	710.833374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347432, intron 1 of 3)	intron (NM_001347432, intron 1 of 3)	3163.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83650284-2	chr7	83649784	83650784	+	710.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 15 of 18)	intron (NM_001360088, intron 15 of 18)	5211.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-23920936-4	chr1	23920452	23921452	+	710.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357395, intron 1 of 10)	intron (NM_001357395, intron 1 of 10)	1429.0	NM_001357395	98366.0	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	14.5	10.5	17.0	12.5	23.5	17.5
Merged-chr6-37430642-3	chr6	37430142	37431142	+	710.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	L2|LINE|L2	11506.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10822760-3	chr17	10822260	10823260	+	710.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 1 of 4)	intron (NM_027032, intron 1 of 4)	17431.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-89906020-3	chr16	89905523	89906523	+	710.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 3 of 27)	B3|SINE|B2	54804.0	NM_009384	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.0	1.5	0.5	0.0	1.5	0.5
Merged-chr9-71155509-4	chr9	71154928	71155928	+	710.825012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073483, intron 1 of 6)	B1F1|SINE|Alu	7205.0	NM_001271843	64008.0	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132776629-1	chr7	132776129	132777129	+	710.799988	f0_balb.idr	intron (NM_212473, intron 2 of 4)	intron (NM_212473, intron 2 of 4)	287.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-75343421-3	chr16	75342937	75343937	+	710.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	242624.0	NM_001252513	320355.0	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96489673-3	chr3	96489174	96490174	+	710.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEz-int|LTR|ERVK	-35511.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-100439292-3	chr6	100438796	100439796	+	710.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-88104.0	NR_040525	73395.0	Mm.69413	NR_040525	ENSMUSG00000101553	1700049E22Rik	-	RIKEN cDNA 1700049E22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102824391-2	chr2	102823847	102824847	+	710.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 11 of 13)	intron (NM_001039150, intron 11 of 13)	77318.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	8.0	9.0	19.5	3.5	16.5	8.0
Merged-chr9-102354762-2	chr9	102354262	102355262	+	710.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168296)	promoter-TSS (NM_001168296)	-69.0	NM_001168296	270190.0	Mm.22897	NM_173447	ENSMUSG00000032537	Ephb1	9330129L11|AW488255|C130099E04Rik|Cek6|Elk|Elkh|Hek6|Net	Eph receptor B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108983292-4	chr8	108982816	108983816	+	710.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4c|LINE|L1	46456.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40345321-3	chr9	40344815	40345815	+	710.733337	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_001357617, intron 2 of 20)	intron (NM_001357617, intron 2 of 20)	930.0	NM_001357623	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.0	0.0	2.5	0.5	7.5	9.5
Merged-chr9-31285008-4	chr9	31284506	31285506	+	710.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13605.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-35305231-3	chr15	35304729	35305729	+	710.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9117.0	NM_054049	107587.0	Mm.46336	NM_054049	ENSMUSG00000022330	Osr2	5430409I15Rik|Osr2A|Osr2B	odd-skipped related 2	protein-coding	4.0	0.0	1.5	6.5	0.0	1.5
Merged-chr7-75370691-1	chr7	75370191	75371191	+	710.666687	f0_balb.idr	Intergenic	Intergenic	-61429.0	NM_153579	64176.0	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108018583-1	chr3	108018083	108019083	+	710.666687	f0_balb.idr	promoter-TSS (NM_010358)	promoter-TSS (NM_010358)	-610.0	NM_010358	14862.0	Mm.37199	NM_010358	ENSMUSG00000058135	Gstm1	Gstb-1|Gstb1	glutathione S-transferase, mu 1	protein-coding	42.5	30.0	36.0	30.0	31.0	41.0
Merged-chr11-3335986-1	chr11	3335486	3336486	+	710.666687	f0_balb.idr	intron (NM_178149, intron 5 of 5)	intron (NM_178149, intron 5 of 5)	5255.0	NM_178149	216505.0	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-61018082-3	chr19	61017566	61018566	+	710.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 2 of 15)	MTE2b|LTR|ERVL-MaLR	122774.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	6.0	26.0	1.0	6.0	24.5	15.5
Merged-chr4-45819415-3	chr4	45818892	45819892	+	710.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018741, intron 1 of 4)	intron (NM_018741, intron 1 of 4)	7435.0	NM_018741	75426.0	Mm.3919	NM_018741	ENSMUSG00000035551	Igfbpl1	2810011G06Rik|2810453O06Rik|IGFBPL	insulin-like growth factor binding protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38635811-2	chr6	38635311	38636311	+	710.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033171, intron 1 of 4)	MTD|LTR|ERVL-MaLR	1428.0	NM_001033171	74253.0	Mm.121859	NM_001033171	ENSMUSG00000071537	Klrg2	2310020F24Rik	killer cell lectin-like receptor subfamily G, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-21451100-2	chr17	21450600	21451600	+	710.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009558, intron 1 of 4)	Lx5b|LINE|L1	726.0	NM_009558	22709.0	Mm.293030	NM_009558	ENSMUSG00000023892	Zfp51	Zfp-51|zfec12	zinc finger protein 51	protein-coding	0.0	5.0	6.0	3.5	4.5	0.5
Merged-chr8-117451359-2	chr8	117450859	117451859	+	710.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 14 of 20)	intron (NM_028941, intron 14 of 20)	-1664.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-46444104-4	chr2	46443597	46444597	+	710.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	747492.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-53007394-3	chr2	53006887	53007887	+	710.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	149519.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110465090-3	chr12	110464599	110465599	+	710.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001135001, intron 2 of 13)	intron (NM_001135001, intron 2 of 13)	17920.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106319309-3	chr9	106318811	106319811	+	710.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 9 of 10)	intron (NM_027354, intron 9 of 10)	38250.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	29.5	55.5	41.0	16.0	35.0	28.5
Merged-chr11-95426685-3	chr11	95426185	95427185	+	710.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359107, intron 1 of 9)	B4A|SINE|B4	12602.0	NM_001359107	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-69106173-3	chr17	69105662	69106662	+	710.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355732, intron 1 of 21)	intron (NM_001355732, intron 1 of 21)	30485.0	NM_001355732	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0.0	0.0	0.0	0.0	1.5	0.0
Merged-chr4-150036089-2	chr4	150035589	150036589	+	710.541626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27066.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	0.0	1.0	0.0	0.0	3.5	4.0
Merged-chr2-166493783-2	chr2	166493283	166494283	+	710.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46332.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-45490907-2	chr5	45490407	45491407	+	710.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2467.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158615591-2	chr2	158615091	158616091	+	710.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009508, exon 2 of 2)	3' UTR (NM_009508, exon 2 of 2)	4833.0	NM_009508	22348.0	Mm.143404	NM_009508	ENSMUSG00000037771	Slc32a1	R75019|VGAT|Viaat	solute carrier family 32 (GABA vesicular transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36534828-2	chr5	36534328	36535328	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 3 of 13)	ORR1E|LTR|ERVL-MaLR	-4205.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-95242986-2	chr7	95242486	95243486	+	710.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-928258.0	NM_001310762	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0.0	0.0	0.0	1.5	0.0	0.0
Merged-chr1-152603033-2	chr1	152602533	152603533	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	MLT1A1|LTR|ERVL-MaLR	22184.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69752253-2	chr11	69751753	69752753	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291068, intron 1 of 28)	intron (NM_001291068, intron 1 of 28)	6380.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.0	1.5	2.0	7.0	5.0	4.5
Merged-chr19-5272299-2	chr19	5271799	5272799	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153129, intron 1 of 23)	intron (NM_153129, intron 1 of 23)	820.0	NM_153129	107975.0	Mm.234923	NM_153129	ENSMUSG00000024855	Pacs1	AI325977	phosphofurin acidic cluster sorting protein 1	protein-coding	0.0	0.5	1.5	4.5	0.0	5.0
Merged-chr2-157423556-2	chr2	157423056	157424056	+	710.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009271)	promoter-TSS (NM_009271)	-737.0	NM_009271	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0.0	0.0	2.0	0.5	1.0	2.0
Merged-chr14-24486149-2	chr14	24485649	24486649	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081247, intron 1 of 30)	intron (NM_001081247, intron 1 of 30)	909.0	NM_001081247	218832.0	Mm.343610	NM_183157	ENSMUSG00000025280	Polr3a	9330175N20Rik|BC053071|RPC1|RPC155	polymerase (RNA) III (DNA directed) polypeptide A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101328452-2	chr4	101327952	101328952	+	710.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18575.0	NR_029537	387143.0		NR_029537	ENSMUSG00000065451	Mir101a	Mirn101|Mirn101a|miR-101|mir-101a	microRNA 101a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110855610-2	chr12	110855119	110856119	+	710.5	f0_balb.idr|f1_balb.idr	exon (NM_001199785, exon 2 of 7)	exon (NM_001199785, exon 2 of 7)	5340.0	NM_028365	72805.0	Mm.443524	NM_028365	ENSMUSG00000021271	Zfp839	2810455K09Rik	zinc finger protein 839	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80065430-2	chr10	80064930	80065930	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359635, intron 14 of 31)	intron (NM_001359635, intron 14 of 31)	10009.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116634612-2	chr6	116634112	116635112	+	710.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178045, exon 11 of 11)	3' UTR (NM_178045, exon 11 of 11)	-5613.0	NM_026057	67255.0	Mm.18810	NM_026057	ENSMUSG00000059878	Zfp422	2900028O21Rik|AU041373|KOX15|Krox-25-2|Krox-26|Krox25|Krox26|Znf22	zinc finger protein 422	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-98384074-2	chr4	98383574	98384574	+	710.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053157)	promoter-TSS (NM_053157)	-809.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19885384-2	chr7	19884884	19885884	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177036, intron 2 of 6)	RSINE1|SINE|B4	2581.0	NM_177036	319930.0	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37605842-3	chr9	37605362	37606362	+	710.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001324545, exon 4 of 5)	exon (NM_001324545, exon 4 of 5)	7858.0	NM_011449	20686.0	Mm.8637	NM_011449	ENSMUSG00000001948	Spa17	Sp17	sperm autoantigenic protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-151858449-2	chr4	151857949	151858949	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 1 of 23)	intron (NM_001081557, intron 1 of 23)	3319.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24651595-2	chr17	24651095	24652095	+	710.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1290.0	NM_023055	65962.0	Mm.21587	NM_023055	ENSMUSG00000002504	Slc9a3r2	0610011L07Rik|1200011K07Rik|2010007A20Rik|E3karp|NHERF-2|Nherf2|Octs2|Sip-1|Sip1|Sryip1|Tka-1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	protein-coding	0.0	0.0	0.0	0.5	0.0	2.5
Merged-chr2-119662897-4	chr2	119662411	119663411	+	710.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356467)	promoter-TSS (NM_001356467)	-77.0	NM_027175	69702.0	Mm.5390	NM_027175	ENSMUSG00000027305	Ndufaf1	2410001M24Rik|CGI-65|CIA30	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1	protein-coding	18.5	27.5	33.5	42.5	78.0	59.5
Merged-chr11-100357381-2	chr11	100356881	100357881	+	710.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1240.0	NM_010404	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0.0	1.5	6.5	0.0	1.5	6.5
Merged-chr10-10327250-2	chr10	10326750	10327750	+	710.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	145064.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29856499-2	chr7	29856006	29857006	+	710.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-2858.0	NM_173738	233057.0	Mm.296864	NM_173738	ENSMUSG00000050855	Zfp940	-	zinc finger protein 940	protein-coding	17.5	8.0	4.0	0.0	0.5	3.5
Merged-chr2-138257602-3	chr2	138257103	138258103	+	710.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025431, intron 1 of 4)	intron (NM_001025431, intron 1 of 4)	1019.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35136771-2	chr17	35136271	35137271	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252469, intron 2 of 23)	intron (NM_001252469, intron 2 of 23)	1057.0	NM_001252469	224727.0	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-122971818-2	chr4	122971318	122972318	+	710.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10630.0	NM_029662	76574.0	Mm.331842	NM_029662	ENSMUSG00000028655	Mfsd2a	1700018O18Rik|Mfsd2|NLS1	major facilitator superfamily domain containing 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44401271-2	chr9	44400771	44401771	+	710.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_106053)	TTS (NR_106053)	848.0	NR_106053	102465658.0		NR_106053	ENSMUSG00000099309	Mir7085	Gm27423|mmu-mir-7085	microRNA 7085	ncRNA	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr17-34588396-2	chr17	34587896	34588896	+	710.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010929, exon 30 of 30)	3' UTR (NM_010929, exon 30 of 30)	-1410.0	NM_134116	106512.0	Mm.26584	NM_134116	ENSMUSG00000034786	Gpsm3	AA960287|AGS4	G-protein signalling modulator 3 (AGS3-like, C. elegans)	protein-coding	34.5	17.5	22.0	16.0	17.5	11.0
Merged-chr14-111332135-2	chr14	111331635	111332635	+	710.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-342980.0	NM_198865	75409.0	Mm.235097	NM_029273	ENSMUSG00000033214	Slitrk5	2610019D03Rik	SLIT and NTRK-like family, member 5	protein-coding	1.5	2.5	0.0	0.0	0.0	0.0
Merged-chr6-86922063-2	chr6	86921563	86922563	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040106, intron 1 of 20)	intron (NM_001040106, intron 1 of 20)	72546.0	NM_001040106	269774.0	Mm.221038	NM_177762	ENSMUSG00000057230	Aak1	5530400K14Rik|9630042K20|AU067724|AU067726|BC028270|C79663|D6Ertd245e|R75501|mKIAA1048	AP2 associated kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5410611-2	chr6	5410111	5411111	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355662, intron 2 of 4)	intron (NM_001355662, intron 2 of 4)	20201.0	NM_001355662	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	0.0	0.0	0.0	2.5	0.0	0.0
Merged-chr5-136881692-2	chr5	136881192	136882192	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024474, intron 1 of 12)	CpG	1523.0	NM_001346699	140709.0	Mm.295020	NM_024474	ENSMUSG00000004415	Col26a1	9430032K24Rik|BC002218|Col26a|Emid2|Emu2	collagen, type XXVI, alpha 1	protein-coding	0.0	0.0	1.5	0.0	0.0	6.0
Merged-chr4-115850779-2	chr4	115850279	115851279	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355174, intron 2 of 11)	intron (NM_001355174, intron 2 of 11)	11581.0	NM_001355174	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49780355-2	chr7	49779855	49780855	+	710.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133740, exon 3 of 16)	exon (NM_133740, exon 3 of 16)	1997.0	NM_133740	71974.0	Mm.33202	NM_133740	ENSMUSG00000030505	Prmt3	2010005E20Rik|2410018A17Rik|AL033309|Hrmt1l3	protein arginine N-methyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80937923-2	chr10	80937423	80938423	+	710.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7832.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135428949-2	chr5	135428449	135429449	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 20 of 30)	B3A|SINE|B2	-34403.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167734513-2	chr2	167734013	167735013	+	710.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43336.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-162624170-2	chr1	162623723	162624723	+	710.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-14927.0	NM_010865	17926.0	Mm.10694	NM_010865	ENSMUSG00000026697	Myoc	AI957332|GLC1A|TIGR	myocilin	protein-coding	9.5	17.0	8.0	15.5	58.5	54.5
Merged-chr13-111940335-2	chr13	111939835	111940835	+	710.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72399.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84697777-2	chr18	84697277	84698277	+	710.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-12075.0	NM_023149	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-22351445-2	chr6	22350945	22351945	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138587, intron 1 of 9)	intron (NM_138587, intron 1 of 9)	4636.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81343795-2	chr10	81343295	81344295	+	710.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148951)	promoter-TSS (NM_148951)	-529.0	NM_148951	209047.0	Mm.218755	NM_148951	ENSMUSG00000034872	Gipc3	Ahl5|Rgs19ip3	GIPC PDZ domain containing family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-79348094-2	chr17	79347594	79348594	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026514, intron 1 of 1)	L3b|LINE|CR1	6997.0	NM_026514	260409.0	Mm.140601	NM_026514	ENSMUSG00000036533	Cdc42ep3	3200001F04Rik|AA986861|Borg2|Cep3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr1-180279999-2	chr1	180279499	180280499	+	710.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23699.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126554968-2	chr7	126554468	126555468	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146200, intron 15 of 20)	B3|SINE|B2	11398.0	NM_146200	56347.0	Mm.22776	NM_146200	ENSMUSG00000030738	Eif3c	110kDa|3230401O13Rik|Eif3s8|NIPIL(A3)|NipilA3|Xs|Xsl	eukaryotic translation initiation factor 3, subunit C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6601071-2	chr15	6600571	6601571	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011815, intron 1 of 17)	B1_Mur2|SINE|Alu	21224.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-48790833-2	chr7	48790333	48791333	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028031, intron 1 of 16)	intron (NM_028031, intron 1 of 16)	1830.0	NM_028031	243983.0	Mm.279116	NM_028031	ENSMUSG00000030471	Zdhhc13	2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4	zinc finger, DHHC domain containing 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-130379889-2	chr10	130379389	130380389	+	710.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14352.0	NM_001081448	625068.0	Mm.359168	NM_001081448	ENSMUSG00000070601	Vmn2r84	EG625068	vomeronasal 2, receptor 84	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36657142-2	chr16	36656642	36657642	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	8935.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32309008-2	chr19	32308508	32309508	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 2 of 9)	RLTR11A|LTR|ERVK	40308.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92439937-2	chr16	92439437	92440437	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	26232.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110770089-2	chr12	110769589	110770589	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347428, intron 1 of 2)	intron (NM_001347428, intron 1 of 2)	32157.0	NM_001347428	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117222570-2	chr10	117222070	117223070	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026570, intron 1 of 6)	B4A|SINE|B4	1937.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98590131-2	chr13	98589631	98590631	+	710.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47279.0	NM_026685	68344.0	Mm.28766	NM_026685	ENSMUSG00000046082	Tmem174	0610009B10Rik|AA986094	transmembrane protein 174	protein-coding	2.5	0.0	1.0	2.5	0.0	1.0
Merged-chr1-93073911-2	chr1	93073411	93074411	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001294150, intron 6 of 46)	intron (NM_001294150, intron 6 of 46)	8569.0	NM_001294150	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27631709-4	chr3	27631210	27632210	+	710.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 3 of 26)	intron (NM_001356953, intron 3 of 26)	-46715.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32544846-3	chr9	32544321	32545321	+	710.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3369.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135134317-3	chr5	135133824	135134824	+	710.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152882, intron 14 of 16)	ZP3AR|Satellite|Satellite	-15387.0	NM_013763	27368.0	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56874726-4	chr18	56874215	56875215	+	710.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177115, intron 1 of 4)	intron (NM_177115, intron 1 of 4)	50833.0	NM_177115	320253.0	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125724519-2	chr8	125724019	125725019	+	710.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9684.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-16160625-3	chr4	16160123	16161123	+	710.388855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138102, intron 1 of 11)	intron (NR_138102, intron 1 of 11)	3020.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84102973-2	chr17	84102473	84103473	+	710.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	24313.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-140268543-3	chr1	140268027	140269027	+	710.366638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081027, intron 1 of 27)	intron (NM_001081027, intron 1 of 27)	22270.0	NM_001081027	240776.0	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-177408898-2	chr1	177408398	177409398	+	710.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33453.0	NM_001355099	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58475890-2	chr16	58475390	58476390	+	710.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_018784, exon 7 of 11)	exon (NM_018784, exon 7 of 11)	47536.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153740413-2	chr1	153739913	153740913	+	710.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011267)	promoter-TSS (NM_011267)	60.0	NM_011267	19734.0	Mm.181709	NM_011267	ENSMUSG00000026475	Rgs16	Rgs14|Rgsr	regulator of G-protein signaling 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-20594031-2	chr8	20593531	20594531	+	710.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-20896.0	NM_001270553	100861668.0	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-48923822-1	chr7	48923322	48924322	+	710.333313	f0_balb.idr	Intergenic	Intergenic	-35251.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4164997-3	chr12	4164485	4165485	+	710.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 2 of 21)	intron (NM_001159537, intron 2 of 21)	30832.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55812494-3	chr19	55811973	55812973	+	710.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	70663.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	1.0	8.0	7.5	3.0	2.0	6.0
Merged-chr10-125316798-3	chr10	125316308	125317308	+	710.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 1 of 5)	ID_B1|SINE|B4	-7992.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62013694-3	chr11	62013197	62014197	+	710.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310526, intron 1 of 7)	intron (NM_001310526, intron 1 of 7)	56934.0	NM_001310526	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75910468-3	chr15	75910013	75911013	+	710.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285429)	promoter-TSS (NM_001285429)	778.0	NM_178646	105734.0	Mm.275583	NM_178646	ENSMUSG00000103906	Tigd5	AA409802|AA409995|AI666797	tigger transposable element derived 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-148980542-2	chr6	148980042	148981042	+	710.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34072.0	NM_001361398	56306.0	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Sinhcaf|Tera	family with sequence similarity 60, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	3.0
Merged-chr8-109751890-2	chr8	109751390	109752390	+	710.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14151.0	NM_001080930	52335.0	Mm.276770	NM_001080930	ENSMUSG00000069895	Atxn1l	AW558552|Boat|C330011L24Rik|D6Mgi37|D8Ertd587e	ataxin 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80690905-2	chr18	80690350	80691350	+	710.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 2 of 9)	intron (NM_198429, intron 2 of 9)	17323.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	18.0	42.5	39.0	19.5	46.5	49.0
Merged-chr6-112739809-3	chr6	112739330	112740330	+	710.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080448, intron 15 of 21)	intron (NM_080448, intron 15 of 21)	-43160.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131820342-3	chr2	131819883	131820883	+	710.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_029381, exon 3 of 3)	non-coding (NR_029381, exon 3 of 3)	27273.0	NR_029381	414081.0	Mm.246905	NR_029381	ENSMUSG00000086822	5330413P13Rik	-	RIKEN cDNA 5330413P13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-114837182-3	chr13	114836678	114837678	+	710.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008396, exon 29 of 30)	exon (NM_008396, exon 29 of 30)	18941.0	NM_001113374	17434.0	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54860856-2	chr18	54860356	54861356	+	710.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	129324.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87754650-5	chr11	87754129	87755129	+	710.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2235.0	NR_029555	387160.0		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	24.5	120.0	79.0	13.5	81.0	83.0
Merged-chr5-110598893-3	chr5	110598384	110599384	+	710.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198306, intron 5 of 10)	intron (NM_198306, intron 5 of 10)	-4621.0	NM_001122639	231605.0	Mm.275748	NM_198306	ENSMUSG00000033316	Galnt9	GalNAc-T9	polypeptide N-acetylgalactosaminyltransferase 9	protein-coding	2.5	0.0	0.0	1.5	1.0	0.5
Merged-chr8-14095935-6	chr8	14095584	14096584	+	710.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001145965, exon 1 of 15)	5' UTR (NM_001145965, exon 1 of 15)	209.0	NM_172910	244310.0	Mm.404697	NM_172910	ENSMUSG00000047495	Dlgap2	6430596N04Rik|Dap-2|Dap2|Sapap2	DLG associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50836371-2	chr14	50835871	50836871	+	710.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_009351, exon 40 of 55)	exon (NM_009351, exon 40 of 55)	28455.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	27.0	5.5	1.0	8.5	2.0	2.5
Merged-chr13-23412544-3	chr13	23412058	23413058	+	710.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11308.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119836228-3	chr8	119835617	119836617	+	710.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	4462.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33415737-2	chr16	33415237	33416237	+	710.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358569, intron 1 of 8)	RSINE1|SINE|B4	15292.0	NM_001358569	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134480961-4	chr4	134480474	134481474	+	710.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12654.0	NM_019641	16765.0	Mm.378957	NM_019641	ENSMUSG00000028832	Stmn1	19k|Lag|Lap18|Op18|P18|P19|Pig|Pp17|Pp18|Pp19|Pr22|Smn	stathmin 1	protein-coding	0.0	12.0	1.0	8.5	0.0	0.0
Merged-chr11-54921103-4	chr11	54920649	54921649	+	710.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271456, intron 12 of 18)	intron (NM_001271456, intron 12 of 18)	18295.0	NM_008161	14778.0	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-43653936-3	chr11	43653438	43654438	+	710.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-28060.0	NM_027557	70802.0	Mm.397449	NM_027557	ENSMUSG00000044950	Pwwp2a	4631424J17Rik|AI891583|AU024105|D930040F23Rik	PWWP domain containing 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145391835-3	chr2	145391325	145392325	+	710.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053195, intron 2 of 16)	A-rich|Low_complexity|Low_complexity	149214.0	NM_053195	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103474961-2	chr14	103474461	103475461	+	710.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38380.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118226176-2	chr11	118225676	118226676	+	710.041626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-13434.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-39150454-2	chr15	39149954	39150954	+	710.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37580.0	NM_198606	223499.0	Mm.321937	NM_198606	ENSMUSG00000022300	Dcaf13	Gm83|Wdsof1	DDB1 and CUL4 associated factor 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34752894-3	chr19	34752398	34753398	+	710.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5787.0	NM_172838	240638.0	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	2.0	21.0	6.5	1.5	9.0	9.0
Merged-chr8-100270886-2	chr8	100270386	100271386	+	710.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	854212.0	NR_132435	234624.0	Mm.124595	NM_175479	ENSMUSG00000052479	A330008L17Rik	-	RIKEN cDNA A330008L17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115417422-2	chr8	115416922	115417922	+	710.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	289472.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22594517-2	chr8	22594017	22595017	+	710.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198998)	promoter-TSS (NM_001198998)	-704.0	NM_011696	22335.0	Mm.227704	NM_011696	ENSMUSG00000008892	Vdac3	-	voltage-dependent anion channel 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-104960556-1	chr5	104960056	104961056	+	710.0	f1_balb.idr	intron (NM_030239, intron 10 of 15)	L1MB3|LINE|L1	22161.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	2.5	0.5	8.0	2.5	1.5	5.0
Merged-chr11-32600071-1	chr11	32599571	32600571	+	710.0	f1_c57bl6.idr	intron (NM_009288, intron 9 of 18)	ID4_|SINE|ID	-42484.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	11.0	8.0	11.5	0.0	3.5	7.0
Merged-chr15-96597152-2	chr15	96596652	96597652	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166456, intron 4 of 15)	intron (NM_001166456, intron 4 of 15)	44810.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3915469-2	chr11	3914969	3915969	+	710.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153142)	promoter-TSS (NM_153142)	-805.0	NM_153142	103710.0	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127340098-3	chr10	127339587	127340587	+	710.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010296, intron 2 of 12)	intron (NM_010296, intron 2 of 12)	1492.0	NM_010296	14632.0	Mm.391450	NM_010296	ENSMUSG00000025407	Gli1	AV235269|Zfp-5|Zfp5	GLI-Kruppel family member GLI1	protein-coding	3.0	1.0	6.5	0.0	1.0	0.0
Merged-chr7-19665789-1	chr7	19665289	19666289	+	710.0	f0_balb.idr	promoter-TSS (NM_019649)	promoter-TSS (NM_019649)	-759.0	NM_019649	56457.0	Mm.290960	NM_019649	ENSMUSG00000002981	Clptm1	HS9|N14	cleft lip and palate associated transmembrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12814025-1	chr19	12813525	12814525	+	710.0	f0_balb.idr	intron (NM_134152, intron 3 of 8)	intron (NM_134152, intron 3 of 8)	15446.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	1.0	4.5	3.5	10.0	20.0	5.0
Merged-chr8-46854310-2	chr8	46853810	46854810	+	710.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114565.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-111218563-2	chr5	111218066	111219066	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 6 of 22)	intron (NM_001267622, intron 6 of 22)	-112131.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	0.0	4.5	2.0	2.0	0.0	0.0
Merged-chr13-113032140-3	chr13	113031644	113032644	+	710.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3235.0	NM_001281487	238896.0		NM_001281487	ENSMUSG00000078926	Cdc20b	EG238896|EG622422	cell division cycle 20B	protein-coding	0.0	0.0	1.0	3.0	0.5	2.0
Merged-chr14-31209594-2	chr14	31209094	31210094	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009393, intron 1 of 5)	intron (NM_009393, intron 1 of 5)	1282.0	NM_009393	21924.0	Mm.439921	NM_009393	ENSMUSG00000091898	Tnnc1	AI874626|TnC|cTnC|cTnI|tncc	troponin C, cardiac/slow skeletal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-9383645-2	chr11	9383145	9384145	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 31 of 61)	intron (NM_178259, intron 31 of 61)	191703.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8899427-2	chr4	8898927	8899927	+	710.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	148103.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5141230-2	chr18	5140730	5141730	+	710.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24501.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102073640-2	chr5	102073140	102074140	+	710.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3719.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61072910-2	chr18	61072410	61073410	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008809, intron 12 of 22)	intron (NM_008809, intron 12 of 22)	27760.0	NM_008809	18596.0	Mm.4146	NM_008809	ENSMUSG00000024620	Pdgfrb	AI528809|CD140b|PDGFR-1|Pdgfr	platelet derived growth factor receptor, beta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-9955224-3	chr15	9954752	9955752	+	710.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-206384.0	NM_001305044	320277.0	Mm.127822	NM_177123	ENSMUSG00000072663	Spef2	C230086A09Rik	sperm flagellar 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39317651-1	chr18	39317151	39318151	+	710.0	f1_c57bl6.idr	intron (NM_001361073, intron 20 of 21)	MTE2b|LTR|ERVL-MaLR	169594.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	1.0	0.0	0.0	1.0	2.0
Merged-chr11-115185612-2	chr11	115185112	115186112	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025400, intron 2 of 6)	intron (NM_025400, intron 2 of 6)	1704.0	NM_025400	66176.0	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	24.0	111.5	51.5	6.0	19.0	24.5
Merged-chr11-11692670-2	chr11	11692170	11693170	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301863, intron 1 of 7)	intron (NM_001301863, intron 1 of 7)	2493.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107252850-1	chr4	107252350	107253350	+	710.0	f0_balb.idr	promoter-TSS (NM_001355460)	promoter-TSS (NM_001355460)	683.0	NM_029985	77809.0	Mm.29681	NM_029985	ENSMUSG00000028617	Lrrc42	A930011F22Rik|AA536996	leucine rich repeat containing 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-43723405-2	chr10	43722905	43723905	+	710.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22753.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126540266-2	chr7	126539766	126540766	+	710.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26100.0	NM_146200	56347.0	Mm.22776	NM_146200	ENSMUSG00000030738	Eif3c	110kDa|3230401O13Rik|Eif3s8|NIPIL(A3)|NipilA3|Xs|Xsl	eukaryotic translation initiation factor 3, subunit C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3518033-2	chr4	3517516	3518516	+	710.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-19074.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	18.0	21.0	22.5	14.5	15.5	18.5
Merged-chr9-47754240-2	chr9	47753742	47754742	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	63966.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	2.5	0.0	3.0	0.5	0.5	2.0
Merged-chr16-4675856-2	chr16	4675356	4676356	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030205, intron 2 of 27)	intron (NM_030205, intron 2 of 27)	3864.0	NM_030205	78885.0	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17643524-1	chr6	17643024	17644024	+	710.0	f1_c57bl6.idr	intron (NM_007604, intron 1 of 9)	intron (NM_007604, intron 1 of 9)	6514.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	39.5	24.5	28.5	30.5	45.5	34.0
Merged-chr2-30793666-2	chr2	30793166	30794166	+	710.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	8071.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27212225-2	chr15	27211725	27212725	+	710.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4-int|LTR|ERVK	-254452.0	NM_020332	11732.0	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-131923168-2	chr4	131922668	131923668	+	710.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001128606)	TTS (NM_001128606)	1397.0	NM_001201367	623230.0	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121817626-2	chr3	121817126	121818126	+	710.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2324.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118823314-1	chr9	118822814	118823814	+	710.0	f1_balb.idr	intron (NM_001113514, intron 4 of 13)	MIRb|SINE|MIR	-103222.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	5.5	1.0	6.5	5.0	2.5	2.0
Merged-chr15-6404169-2	chr15	6403669	6404669	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	17421.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46314813-2	chr19	46314313	46315313	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028627, intron 12 of 17)	intron (NM_028627, intron 12 of 17)	8883.0	NM_001177370	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.0	3.5	0.0	0.0	0.0	0.0
Merged-chr10-80322213-2	chr10	80321713	80322713	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008793, intron 13 of 14)	intron (NM_008793, intron 13 of 14)	-1665.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-133094926-1	chr3	133094426	133095426	+	710.0	f0_balb.idr	intron (NM_027927, intron 1 of 6)	intron (NM_027927, intron 1 of 6)	-2887.0	NM_001356309	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34049578-2	chr11	34049078	34050078	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 1 of 20)	intron (NM_010696, intron 1 of 20)	2650.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-76927704-2	chr18	76927204	76928204	+	710.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2323.0	NM_025409	66191.0	Mm.28593	NM_025409	ENSMUSG00000090000	Ier3ip1	1110057H19Rik|AI644142|AL022842|AL022863|AV026606	immediate early response 3 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16162834-1	chr7	16162334	16163334	+	710.0	f1_balb.idr	Intergenic	B1_Mus1|SINE|Alu	-12561.0	NM_001277988	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	2.5	0.0	0.5	7.0	15.0	3.0
Merged-chr8-120821082-1	chr8	120820582	120821582	+	710.0	f0_balb.idr	Intergenic	Intergenic	82443.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97991214-2	chr3	97990714	97991714	+	710.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22324.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-36878391-1	chr7	36877891	36878891	+	710.0	f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	180273.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	3.5	0.0	1.0	1.5	0.0	2.0
Merged-chr3-96725587-2	chr3	96725087	96726087	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028925, intron 2 of 14)	intron (NM_028925, intron 2 of 14)	1852.0	NM_028925	74414.0	Mm.276043	NM_028925	ENSMUSG00000028099	Polr3c	4933407E01Rik|RPC3|RPC62	polymerase (RNA) III (DNA directed) polypeptide C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74397397-2	chr17	74396897	74397897	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252478, intron 1 of 13)	B4A|SINE|B4	1789.0	NM_144798	210148.0	Mm.243943	NM_144798	ENSMUSG00000024069	Slc30a6	9530029F08Rik|ZnT6	solute carrier family 30 (zinc transporter), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-18636954-2	chr9	18636454	18637454	+	710.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	118679.0	NM_146606	18322.0	Mm.246530	NM_146606	ENSMUSG00000054141	Olfr24	MOR132-1|MTPCR51	olfactory receptor 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-143956967-2	chr2	143956467	143957467	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024281, intron 11 of 23)	intron (NM_024281, intron 11 of 23)	41636.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32939546-2	chr18	32939045	32940045	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009793, intron 1 of 10)	CpG	504.0	NM_009793	12326.0	Mm.222329	NM_009793	ENSMUSG00000038128	Camk4	A430110E23Rik|AI666733|CaMKIV|CaMKIV/Gr|D18Bwg0362e	calcium/calmodulin-dependent protein kinase IV	protein-coding	0.0	0.0	2.5	0.0	0.0	0.0
Merged-chr4-123502478-2	chr4	123501978	123502978	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 19 of 92)	intron (NM_001199137, intron 19 of 92)	-90567.0	NM_001167918	442834.0	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-79781495-2	chr7	79780995	79781995	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037927, intron 17 of 17)	intron (NM_001037927, intron 17 of 17)	12095.0	NM_008588	17292.0	Mm.1404	NM_008588	ENSMUSG00000030544	Mesp1	bHLHc5	mesoderm posterior 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-174042255-2	chr1	174041735	174042735	+	710.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_146717, exon 1 of 1)	exon (NM_146717, exon 1 of 1)	302.0	NM_146717	258712.0	Mm.223146	NM_146717	ENSMUSG00000045381	Olfr433	MOR123-1	olfactory receptor 433	protein-coding	5.5	32.5	16.0	20.0	30.5	24.5
Merged-chr2-29254720-2	chr2	29254220	29255220	+	710.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1727.0	NR_029460	76220.0	Mm.330108	NR_029460	ENSMUSG00000079499	6530402F18Rik	mKIAA1857	RIKEN cDNA 6530402F18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10766926-2	chr17	10766426	10767426	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	73265.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-61412736-4	chr3	61412310	61413310	+	709.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48303.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34043304-4	chr19	34042817	34043817	+	709.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172837, intron 9 of 9)	MIRb|SINE|MIR	-24041.0	NM_027340	70166.0	Mm.75602	NM_027340	ENSMUSG00000024770	Lipn	2210418G03Rik|Lipl4	lipase, family member N	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-37837520-3	chr3	37837027	37838027	+	709.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61286.0	NR_040559	626410.0	Mm.389417	NR_040559	ENSMUSG00000106461	Gm20755	-	predicted gene, 20755	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30788643-3	chr13	30788126	30789126	+	709.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	39393.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25766096-5	chr7	25765498	25766498	+	709.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 14 of 19)	LTR33A|LTR|ERVL	-11239.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111477922-2	chr8	111477422	111478422	+	709.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170742, intron 17 of 25)	L1ME2|LINE|L1	27722.0	NR_105819									0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7140513-2	chr10	7140020	7141020	+	709.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172546, intron 5 of 12)	intron (NM_172546, intron 5 of 12)	71717.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	0.0	0.0	3.5	2.0	18.0	2.0
Merged-chr3-40524814-2	chr3	40524314	40525314	+	709.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1902.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29488985-4	chr7	29488490	29489490	+	709.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081028, intron 2 of 22)	Charlie2a|DNA|hAT-Charlie	16470.0	NM_001081028	74206.0	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr9-37256464-2	chr9	37255964	37256964	+	709.81665	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020258)	promoter-TSS (NM_020258)	-726.0	NM_001145960	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51132596-1	chr14	51132096	51133096	+	709.799988	f0_c57.idr	TTS (NM_001360117)	TTS (NM_001360117)	3532.0	NR_153407	78416.0	Mm.103835	NM_030098	ENSMUSG00000021880	Rnase6	9530043P15Rik|BB119466	ribonuclease, RNase A family, 6	protein-coding	8.5	5.0	1.0	2.5	0.0	0.5
Merged-chr14-29973373-3	chr14	29972877	29973877	+	709.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019979, exon 4 of 5)	exon (NM_019979, exon 4 of 5)	-4960.0	NM_027493	56249.0	Mm.215110	NM_027493	ENSMUSG00000015971	Actr8	5730542K05Rik|ARP8	ARP8 actin-related protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5474709-5	chr19	5474258	5475258	+	709.780945	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164352)	promoter-TSS (NM_001164352)	23.0	NM_001164352	58859.0	Mm.276367	NM_021474	ENSMUSG00000024909	Efemp2	0610011K11Rik|Fbln4|MBP1	epidermal growth factor-containing fibulin-like extracellular matrix protein 2	protein-coding	7.5	2.5	3.5	7.5	3.0	3.5
Merged-chr11-103358411-2	chr11	103357898	103358898	+	709.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_183288)	TTS (NM_183288)	5294.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0.0	1.5	0.0	0.5	6.5	3.0
Merged-chr19-16168501-2	chr19	16168001	16169001	+	709.75	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033228, exon 1 of 1)	non-coding (NR_033228, exon 1 of 1)	4403.0	NR_033228	595139.0	Mm.405662	NR_033228		E030024N20Rik	9030417F11Rik|Ppia-ps8	peptidylprolyl isomerase A pseudogene 8	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-115119761-2	chr3	115119261	115120261	+	709.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_153458, intron 4 of 5)	Lx3A|LINE|L1	38796.0	NM_153157	229759.0	Mm.54183	NM_153157	ENSMUSG00000027965	Olfm3	B230206G02Rik	olfactomedin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58450575-2	chr1	58450075	58451075	+	709.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_022988, intron 3 of 6)	intron (NM_022988, intron 3 of 6)	-5089.0	NM_027351	70225.0	Mm.340195	NM_027351	ENSMUSG00000026035	Ppil3	2310076N22Rik|2510026K04Rik|Cyp10l	peptidylprolyl isomerase (cyclophilin)-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137194537-3	chr5	137193937	137194937	+	709.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-78230.0	NM_201373	384309.0	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	12.5	0.0	4.0	0.0	0.0	9.5
Merged-chr18-32363922-2	chr18	32363422	32364422	+	709.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_045403, intron 2 of 2)	B4A|SINE|B4	-13295.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	2.0	1.5	0.0	1.0	1.0	0.0
Merged-chr19-18615995-3	chr19	18615495	18616495	+	709.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 1 of 9)	B3A|SINE|B2	15818.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	5.0	18.5	15.0	5.0	9.5	8.0
Merged-chr8-86611002-3	chr8	86610499	86611499	+	709.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-13044.0	NM_025827	66887.0	Mm.324550	NM_025827	ENSMUSG00000047866	Lonp2	1300002A08Rik|AU015403|Lonp	lon peptidase 2, peroxisomal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-34847941-3	chr12	34847439	34848439	+	709.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 2 of 27)	intron (NM_001271386, intron 2 of 27)	69156.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	14.5	5.5	20.5	9.0	20.0	19.5
Merged-chr19-16701957-3	chr19	16701455	16702455	+	709.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173028, intron 31 of 71)	intron (NM_173028, intron 31 of 71)	78978.0	NM_173028	271564.0	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-40133022-3	chr8	40132545	40133545	+	709.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153908.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	17.5	8.5	0.0	14.0	9.5	1.0
Merged-chr17-75555195-1	chr17	75554695	75555695	+	709.666687	f1_c57bl6.idr	Intergenic	ERVB7_1-LTR_MM|LTR|ERVK	-3249.0	NM_001357860	72722.0	Mm.24641	NM_133747	ENSMUSG00000002017	Fam98a	2810405J04Rik|AL024114	family with sequence similarity 98, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38159413-2	chr18	38158905	38159905	+	709.666626	f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	50357.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0.5	0.0	2.5	0.0	6.0	2.0
Merged-chr19-8844953-2	chr19	8844453	8845453	+	709.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008144, intron 3 of 10)	intron (NM_008144, intron 3 of 10)	4450.0	NM_001290823	14705.0	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94121341-2	chr10	94120841	94121841	+	709.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 9 of 20)	intron (NM_053072, intron 9 of 20)	-26590.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	8.0	2.0	3.5	0.0	0.0	0.0
Merged-chr7-16728779-2	chr7	16728279	16729279	+	709.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30|LTR|ERV1	6850.0	NM_011927	26368.0	Mm.27096	NM_011927	ENSMUSG00000007209	Ceacam9	AA410097|AW545709|Cea-5|Cea5|mmCGM8	carcinoembryonic antigen-related cell adhesion molecule 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-105627346-2	chr7	105626911	105627911	+	709.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_018880, intron 1 of 11)	B1_Mur4|SINE|Alu	6160.0	NM_018880	55992.0	Mm.29290	NM_018880	ENSMUSG00000036989	Trim3	BERP1|HAC1|Rnf22	tripartite motif-containing 3	protein-coding	1.5	0.0	5.0	0.5	2.0	3.0
Merged-chr5-28451151-2	chr5	28450651	28451651	+	709.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15833.0	NR_015562	654796.0	Mm.57202	NR_015562	ENSMUSG00000097726	9530036O11Rik	-	RIKEN cDNA 9530036O11Rik	ncRNA	9.0	0.0	1.5	3.5	2.5	0.0
Merged-chr14-30611172-2	chr14	30610672	30611672	+	709.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310682)	promoter-TSS (NM_001310682)	-862.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	4.5	15.0	23.5	3.0	6.5	3.5
Merged-chr2-122194745-2	chr2	122194245	122195245	+	709.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_028914, intron 5 of 6)	Lx8|LINE|L1	8473.0	NM_028914	74401.0	Mm.374834	NM_028914	ENSMUSG00000027229	Terb2	4933406J08Rik	telomere repeat binding bouquet formation protein 2	protein-coding	3.0	0.0	1.0	10.5	8.5	0.5
Merged-chr2-6258154-3	chr2	6257656	6258656	+	709.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 3 of 6)	intron (NR_040333, intron 3 of 6)	-45162.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	17.5	12.0	7.5	3.5	10.0	13.5
Merged-chr3-127918218-3	chr3	127917722	127918722	+	709.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040552, intron 1 of 4)	ORR1D2|LTR|ERVL-MaLR	2051.0	NR_040552	329753.0	Mm.119720	NR_040552	ENSMUSG00000104763	9830132P13Rik	9830132P13	RIKEN cDNA 9830132P13 gene	ncRNA	0.0	19.0	10.0	0.0	7.5	1.0
Merged-chr11-53822234-2	chr11	53821725	53822725	+	709.583374	f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 2 of 3)	RMER10A|LTR|ERVL	37031.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-73762531-4	chr18	73762029	73763029	+	709.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8050.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-29475216-2	chr18	29474716	29475716	+	709.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045391, intron 1 of 7)	RMER17B2|LTR|ERVK	21200.0	NR_045391	78058.0	Mm.416952	NR_045391		4930578E11Rik	-	RIKEN cDNA 4930578E11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79097563-2	chr12	79097063	79098063	+	709.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_110486, intron 2 of 2)	intron (NR_110486, intron 2 of 2)	6376.0	NR_110486	321017.0	Mm.311575	NR_110486	ENSMUSG00000112489	9230116L04Rik	-	RIKEN cDNA 9230116L04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31136369-2	chr3	31135869	31136869	+	709.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13551.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80790971-2	chr10	80790471	80791471	+	709.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_199322, exon 27 of 28)	exon (NM_199322, exon 27 of 28)	7655.0	NM_023900	78670.0	Mm.41479	NM_023900	ENSMUSG00000035278	Plekhj1	9530063M10Rik	pleckstrin homology domain containing, family J member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33557272-2	chr17	33556759	33557759	+	709.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053214, intron 1 of 27)	ID_B1|SINE|B4	1552.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	5.5	35.5	18.0	11.5	34.5	17.0
Merged-chr4-141673357-1	chr4	141672857	141673857	+	709.5	f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-9242.0	NM_001033150	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	3.5	12.5	13.0	11.5	40.5	9.5
Merged-chr2-11206248-2	chr2	11205748	11206748	+	709.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	33866.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4166037-2	chr19	4165537	4166537	+	709.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_134148, exon 10 of 10)	exon (NM_134148, exon 10 of 10)	-2654.0	NR_153659	58988.0	Mm.271937	NM_021485	ENSMUSG00000024830	Rps6kb2	S6K-beta-2|S6K2	ribosomal protein S6 kinase, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-96432543-2	chr13	96432043	96433043	+	709.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042714, intron 9 of 13)	intron (NM_001042714, intron 9 of 13)	38617.0	NM_001042714	271144.0	Mm.470057	NM_001042714	ENSMUSG00000047117	Ankdd1b	9330128J19Rik	ankyrin repeat and death domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136739745-2	chr1	136739245	136740245	+	709.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	43534.0	NR_037986	100503474.0	Mm.428276	NR_037986		Platr22	Gm16880	pluripotency associated transcript 22	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130174697-2	chr5	130174197	130175197	+	709.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359233, intron 1 of 7)	intron (NM_001359233, intron 1 of 7)	2878.0	NM_001359233	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95684138-2	chr16	95683638	95684638	+	709.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18269.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-61607106-2	chr2	61606606	61607606	+	709.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_149323, intron 2 of 9)	intron (NR_149323, intron 2 of 9)	14009.0	NR_149323	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88231546-2	chr1	88231046	88232046	+	709.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 5 of 41)	L2c|LINE|L2	4526.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12918474-2	chr13	12917974	12918974	+	709.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F3|LINE|L1	86856.0	NM_031191	18811.0	Mm.88796	NM_031191	ENSMUSG00000079092	Prl2c2	Ghd2|MRP-1|PLF-1|Plf|Plf1	prolactin family 2, subfamily c, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34675789-2	chr7	34675289	34676289	+	709.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_175140, exon 4 of 4)	exon (NM_175140, exon 4 of 4)	-20280.0	NM_001360818	233107.0	Mm.76761	NM_146188	ENSMUSG00000030499	Kctd15	BC031749	potassium channel tetramerisation domain containing 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88963421-2	chr3	88962921	88963921	+	709.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2391.0	NM_138679	192195.0	Mm.130752	NM_138679	ENSMUSG00000028053	Ash1l	8030453L17Rik|Ash1|E430018P19Rik|Kmt2h	ASH1 like histone lysine methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127199083-2	chr7	127198583	127199583	+	709.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_144522, exon 9 of 9)	exon (NM_144522, exon 9 of 9)	-3006.0	NM_027353	70233.0	Mm.28050	NM_027353	ENSMUSG00000042502	Cd2bp2	1500011B02Rik|2410024K20Rik|AW048183	CD2 antigen (cytoplasmic tail) binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7469191-2	chr10	7468691	7469691	+	709.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029975, intron 1 of 5)	intron (NM_029975, intron 1 of 5)	4286.0	NM_029975	77777.0	Mm.442442	NM_029975	ENSMUSG00000079685	Ulbp1	A430108B07Rik|MULT1	UL16 binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr8-94647998-2	chr8	94647498	94648498	+	709.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359093, intron 11 of 14)	MTD|LTR|ERVL-MaLR	-18602.0	NM_024191	107566.0	Mm.393247	NM_024191	ENSMUSG00000031776	Arl2bp	1700010P10Rik|1700027H16Rik|6330544B05Rik|AI482273|AI849834|BART|Bart1	ADP-ribosylation factor-like 2 binding protein	protein-coding	0.0	0.5	0.5	0.5	0.5	0.0
Merged-chr5-115342004-2	chr5	115341504	115342504	+	709.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029645)	promoter-TSS (NM_029645)	757.0	NM_026933	69076.0	Mm.27951	NM_026933	ENSMUSG00000029535	Triap1	1810015M01Rik|AU020874|AU043831|P53csv|Wf-1	TP53 regulated inhibitor of apoptosis 1	protein-coding	19.0	43.0	62.5	22.5	47.5	47.5
Merged-chr15-85035926-2	chr15	85035426	85036426	+	709.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1136.0	NM_001356617	73225.0	Mm.247535	NM_133750	ENSMUSG00000022434	Fam118a	-	family with sequence similarity 118, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-38439362-2	chr3	38438862	38439862	+	709.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45454.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56741697-2	chr19	56741197	56742197	+	709.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19325.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32536330-2	chr2	32535830	32536830	+	709.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153560, intron 1 of 10)	intron (NM_153560, intron 1 of 10)	971.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35270494-2	chr16	35269994	35270994	+	709.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001012765, intron 5 of 20)	intron (NM_001012765, intron 5 of 20)	93424.0	NM_133704	317717.0	Mm.259164	NM_133704	ENSMUSG00000034473	Sec22a	1810005C06Rik|Sec22l2	SEC22 homolog A, vesicle trafficking protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27009736-2	chr17	27009236	27010236	+	709.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8299.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8948968-2	chr19	8948468	8949468	+	709.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011842, exon 14 of 18)	exon (NM_011842, exon 14 of 18)	-4864.0	NM_197993	70044.0	Mm.165979	NM_197993	ENSMUSG00000071645	Tut1	2700038E08Rik|PAPD2|Rbm21|TUTase6|U6-TUTase|star-PAP	terminal uridylyl transferase 1, U6 snRNA-specific	protein-coding	0.0	1.0	1.0	0.0	4.0	0.0
Merged-chr11-114962919-1	chr11	114962419	114963419	+	709.5	f1_c57bl6.idr	Intergenic	Intergenic	-2502.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	9.5	23.5	15.0	13.0	6.5	12.5
Merged-chr5-38558126-2	chr5	38557626	38558626	+	709.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011715, intron 2 of 14)	intron (NM_011715, intron 2 of 14)	3469.0	NM_011715	22388.0	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	4.0	7.0	6.0	4.5	9.5	7.5
Merged-chr19-3368419-2	chr19	3367919	3368919	+	709.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 9 of 18)	B3A|SINE|B2	-20438.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67307306-4	chr7	67306820	67307820	+	709.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 3 of 11)	intron (NM_001357324, intron 3 of 11)	65538.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166060192-2	chr2	166059659	166060659	+	709.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 16 of 22)	B3|SINE|B2	67522.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53768445-2	chr11	53767945	53768945	+	709.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1569.0	NM_001159393	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-147009995-4	chr2	147009476	147010476	+	709.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3023.0	NM_001356403	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	13.0	16.0	10.0	23.0	26.5	25.5
Merged-chr4-152036740-2	chr4	152036308	152037308	+	709.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_031867, intron 1 of 5)	B1_Mus1|SINE|Alu	1682.0	NM_031867	110326.0	Mm.29232	NM_031867	ENSMUSG00000028950	Tas1r1	Gpr70|T1r1|TR1	taste receptor, type 1, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89859182-2	chr3	89858682	89859682	+	709.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172530)	TTS (NM_172530)	27812.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71479094-2	chr17	71478611	71479611	+	709.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-3768.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	11.0	4.0	5.5	0.0	1.5	0.0
Merged-chr13-89389542-2	chr13	89389042	89390042	+	709.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-151094.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59188342-2	chr2	59187842	59188842	+	709.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	27492.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32532134-2	chr11	32531592	32532592	+	709.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1174.0	NM_001359178	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	3.0	3.5	5.5	1.0	0.0	1.0
Merged-chr11-9118690-2	chr11	9118190	9119190	+	709.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159402, intron 1 of 8)	intron (NM_001159402, intron 1 of 8)	183.0	NM_001159402	22271.0	Mm.4610	NM_009477	ENSMUSG00000020407	Upp1	AI325217|UPase|UdRPase|Up|Upp	uridine phosphorylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8789966-3	chr3	8789456	8790456	+	709.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB2_1A-I_MM-int|LTR|ERVK	-122918.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-15265692-1	chr18	15265192	15266192	+	709.333313	f0_balb.idr	Intergenic	Intergenic	-114246.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154998043-3	chr4	154997569	154998569	+	709.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356470, intron 10 of 22)	RLTR28|LTR|ERVL	12915.0	NM_175556	269615.0	Mm.379458	NM_175556	ENSMUSG00000029055	Plch2	A930027K05Rik|PLCeta2|Plc-eta2|Plcl4	phospholipase C, eta 2	protein-coding	0.0	0.0	3.0	0.0	0.0	4.5
Merged-chr17-70826500-2	chr17	70826000	70827000	+	709.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR51B_Mm|LTR|ERVK?	20277.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	2.0	0.0	1.0	0.0	0.0	0.0
Merged-chr2-128375082-1	chr2	128374582	128375582	+	709.333313	f1_balb.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	54269.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	106.5	273.0	223.5	139.0	362.5	170.0
Merged-chr3-57706267-3	chr3	57705764	57706764	+	709.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-13727.0	NM_001033349	242037.0	Mm.291091	NM_001033349	ENSMUSG00000074591	Ankub1	Gm410	ankrin repeat and ubiquitin domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-56301968-4	chr8	56301465	56302465	+	709.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008278, intron 3 of 6)	intron (NM_008278, intron 3 of 6)	7413.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107130809-3	chr3	107130317	107131317	+	709.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29250.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0.0	1.5	2.5	0.0	0.0	0.0
Merged-chr1-156043217-3	chr1	156042693	156043693	+	709.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172843, intron 2 of 6)	intron (NM_172843, intron 2 of 6)	2332.0	NM_022329	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	10.0	5.0	7.0	3.0	9.0	2.0
Merged-chr13-21994235-2	chr13	21993735	21994735	+	709.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Ser-AGY|tRNA|tRNA	13041.0	NM_001162929	195236.0	Mm.204664	NM_001162928	ENSMUSG00000016982	Pom121l2	Gm24	POM121 membrane glycoprotein-like 2 (rat)	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr4-152132427-2	chr4	152131927	152132927	+	709.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_207688, intron 3 of 10)	intron (NM_207688, intron 3 of 10)	-3502.0	NM_019585	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46678975-2	chr17	46678475	46679475	+	709.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163729, intron 1 of 10)	intron (NM_001163729, intron 1 of 10)	-1478.0	NM_001277310	17256.0	Mm.329083	NM_010787	ENSMUSG00000002768	Mea1	Mea-1	male enhanced antigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59145786-2	chr2	59145286	59146286	+	709.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 1 of 13)	L1_Mus2|LINE|L1	14897.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-100836609-2	chr10	100836109	100837109	+	709.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-94974.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3688683-4	chr19	3688185	3689185	+	709.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2121.0	NM_008513	16973.0	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103016405-5	chr11	103015855	103016855	+	709.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026551, intron 1 of 4)	intron (NM_026551, intron 1 of 4)	792.0	NM_026551	68087.0	Mm.277449	NM_026551	ENSMUSG00000020935	Dcakd	3010024O21Rik|6720485C15Rik|AI849483	dephospho-CoA kinase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-123500694-2	chr7	123500194	123501194	+	709.200012	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081329)	promoter-TSS (NM_001081329)	-68.0	NM_001081329	210162.0	Mm.135397	NM_175435	ENSMUSG00000030757	Zkscan2	9430065N20Rik|AW493225|Zfp694	zinc finger with KRAB and SCAN domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80420940-2	chr7	80420472	80421472	+	709.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-15536.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0.0	0.0	1.0	0.0	1.5	0.0
Merged-chr4-123565247-3	chr4	123564743	123565743	+	709.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-51177.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120153760-2	chr6	120153260	120154260	+	709.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-40063.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-61649959-3	chr15	61649471	61650471	+	709.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	124480.0	NR_040350	432956.0	Mm.404918	NR_040350	ENSMUSG00000116031	D030024E09Rik	-	RIKEN cDNA D030024E09 gene	ncRNA	1.0	0.0	3.0	1.0	7.5	0.0
Merged-chr6-113658550-2	chr6	113658050	113659050	+	709.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	20083.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13820453-2	chr16	13819953	13820953	+	709.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346109, intron 1 of 7)	intron (NM_001346109, intron 1 of 7)	1202.0	NM_001346111	18203.0	Mm.380410	NM_010946	ENSMUSG00000022681	Ntan1	PNAA|PNAD	N-terminal Asn amidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111454226-3	chr12	111453750	111454750	+	709.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009396, exon 12 of 12)	3' UTR (NM_009396, exon 12 of 12)	11589.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99452187-4	chr5	99451739	99452739	+	709.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-199312.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77972769-2	chr10	77972269	77973269	+	709.025024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2897.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97604049-3	chr11	97603553	97604553	+	709.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045496, intron 1 of 3)	intron (NR_045496, intron 1 of 3)	5542.0	NR_045496	69729.0	Mm.233452	NR_045496	ENSMUSG00000085860	2410003L11Rik	-	RIKEN cDNA 2410003L11 gene	ncRNA	0.0	0.0	3.0	7.0	0.5	1.5
Merged-chr6-128931003-1	chr6	128930503	128931503	+	709.0	f0_balb.idr	TTS (NR_106107)	TTS (NR_106107)	842.0	NR_106107	102465757.0		NR_106107	ENSMUSG00000098359	Mir7649	mmu-mir-7649	microRNA 7649	ncRNA	4.5	11.0	11.0	5.0	3.5	5.5
Merged-chr14-31495854-2	chr14	31495354	31496354	+	709.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359848)	promoter-TSS (NM_001359848)	775.0	NM_028932	74427.0	Mm.491208	NM_028932	ENSMUSG00000021890	Eaf1	4933403C17Rik|AI666536	ELL associated factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42000535-2	chr19	42000035	42001035	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	18772.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	55.0	99.0	67.0	55.5	112.0	66.5
Merged-chr4-13817635-2	chr4	13817135	13818135	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009822, intron 1 of 10)	Lx8|LINE|L1	32853.0	NM_009822	12395.0	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr3-21985085-2	chr3	21984585	21985585	+	709.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-91567.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120826368-2	chr8	120825868	120826868	+	709.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87729.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94373344-2	chr11	94372844	94373844	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 6 of 30)	intron (NM_029600, intron 6 of 30)	19632.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	12.0	0.0	1.5	5.0	13.5	4.5
Merged-chr2-119621735-2	chr2	119621235	119622235	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042652, intron 1 of 9)	RLTR53_Mm|LTR|ERVK	-3230.0	NM_001042653	70645.0	Mm.246412	NM_001042653	ENSMUSG00000072980	Oip5	5730547N13Rik|Lint-25|Ms18b	Opa interacting protein 5	protein-coding	4.5	5.5	8.0	7.0	5.5	5.5
Merged-chr7-3330407-2	chr7	3329938	3330938	+	709.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011102, exon 18 of 18)	3' UTR (NM_011102, exon 18 of 18)	-2517.0	NM_133189	81904.0	Mm.214994	NM_133189	ENSMUSG00000069806	Cacng7	-	calcium channel, voltage-dependent, gamma subunit 7	protein-coding	0.0	0.0	0.0	5.0	2.5	0.0
Merged-chr4-126098229-1	chr4	126097729	126098729	+	709.0	f1_c57bl6.idr	3' UTR (NM_138721, exon 2 of 2)	3' UTR (NM_138721, exon 2 of 2)	1576.0	NM_138721	116748.0	Mm.41865	NM_138721	ENSMUSG00000050188	Lsm10	-	U7 snRNP-specific Sm-like protein LSM10	protein-coding	2.0	6.5	0.0	0.0	5.0	1.5
Merged-chr1-139504918-1	chr1	139504418	139505418	+	709.0	f1_balb.idr	intron (NM_031164, intron 2 of 11)	Lx3B|LINE|L1	3211.0	NM_031164	14060.0	Mm.30105	NM_031164	ENSMUSG00000026368	F13b	Cf-13b|Cf13b	coagulation factor XIII, beta subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152030309-2	chr4	152029809	152030809	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031867, intron 5 of 5)	ORR1B1|LTR|ERVL-MaLR	-2638.0	NM_133879	100090.0	Mm.24661	NM_133879	ENSMUSG00000028952	Zbtb48	0610011D15Rik|AI327031|Hkr3|TZAP	zinc finger and BTB domain containing 48	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-160195927-1	chr1	160195427	160196427	+	709.0	f1_balb.idr	intron (NM_001347121, intron 1 of 2)	intron (NM_001347121, intron 1 of 2)	595.0	NM_001347121	64659.0	Mm.29599	NM_025474	ENSMUSG00000058267	Mrps14	1810032L21Rik|AL022847|Rpms14	mitochondrial ribosomal protein S14	protein-coding	1.5	9.0	6.0	11.5	9.0	8.5
Merged-chr11-107353962-2	chr11	107353462	107354462	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	URR1B|DNA|hAT-Charlie	116758.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-73254788-1	chr5	73254288	73255288	+	709.0	f1_balb.idr	intron (NM_028194, intron 1 of 62)	intron (NM_028194, intron 1 of 62)	1830.0	NM_028194	72313.0	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	7.5	2.0	0.0	1.5	9.5	2.0
Merged-chr4-133839916-1	chr4	133839416	133840416	+	709.0	f1_balb.idr	Intergenic	B1_Mus2|SINE|Alu	34815.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr5-53948765-1	chr5	53948265	53949265	+	709.0	f0_balb.idr	Intergenic	Intergenic	-49758.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19219677-1	chr7	19219177	19220177	+	709.0	f1_balb.idr	intron (NM_175668, intron 1 of 1)	B1_Mus1|SINE|Alu	7139.0	NM_175668	319197.0	Mm.135984	NM_175668	ENSMUSG00000044317	Gpr4	-	G protein-coupled receptor 4	protein-coding	2.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43442673-3	chr7	43442174	43443174	+	709.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028849, intron 3 of 4)	Lx6|LINE|L1	-1398.0	NM_026695	110826.0	Mm.30200	NM_026695	ENSMUSG00000004610	Etfb	0610009I16Rik|2810441H06Rik	electron transferring flavoprotein, beta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124904951-2	chr6	124904451	124905451	+	709.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008479, exon 7 of 8)	exon (NM_008479, exon 7 of 8)	6754.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-78631577-2	chr8	78631077	78632077	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001009981, intron 5 of 10)	intron (NM_001009981, intron 5 of 10)	122249.0	NM_001282108	76775.0	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77785474-2	chr11	77784974	77785974	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011586, intron 1 of 39)	intron (NM_011586, intron 1 of 39)	8239.0	NM_001291212	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62149708-2	chr15	62149208	62150208	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_003368, intron 3 of 8)	MLT1B|LTR|ERVL-MaLR	69743.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-75445380-1	chr9	75444880	75445880	+	709.0	f1_c57bl6.idr	exon (NM_001039522, exon 2 of 12)	exon (NM_001039522, exon 2 of 12)	3856.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	3.0	4.0	4.0	1.5	2.5	1.0
Merged-chr1-193271235-2	chr1	193270735	193271735	+	709.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008059)	TTS (NM_008059)	1953.0	NM_008059	14373.0	Mm.439721	NM_008059	ENSMUSG00000009633	G0s2	AI255151|AV006465	G0/G1 switch gene 2	protein-coding	0.0	1.5	0.0	0.0	0.0	2.0
Merged-chr17-32892076-2	chr17	32891576	32892576	+	709.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207245)	promoter-TSS (NM_207245)	-473.0	NM_207245	240066.0	Mm.26636	NM_207245	ENSMUSG00000095325	Zfp870	AI173952	zinc finger protein 870	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43463117-2	chr7	43462617	43463617	+	709.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290316)	promoter-TSS (NM_001290316)	-116.0	NM_001290316	75690.0	Mm.30200	NM_001290316	ENSMUSG00000070604	Vsig10l	-	V-set and immunoglobulin domain containing 10 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35054587-1	chr9	35054087	35055087	+	709.0	f1_balb.idr	intron (NM_009178, intron 4 of 10)	intron (NM_009178, intron 4 of 10)	-62141.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	17.5	32.5	29.0	14.0	24.0	25.5
Merged-chr16-87702306-2	chr16	87701806	87702806	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	3352.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166176025-2	chr2	166175525	166176525	+	709.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20342.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80889779-1	chr7	80889279	80890279	+	709.0	f1_c57bl6.idr	TTS (NR_027976)	TTS (NR_027976)	11490.0	NR_152101	71968.0	Mm.274226	NM_028026	ENSMUSG00000025722	Wdr73	1200011I23Rik|2410008B13Rik|AI848574|C85352	WD repeat domain 73	protein-coding	3.0	12.5	5.0	0.0	8.0	0.0
Merged-chr3-90296364-2	chr3	90295864	90296864	+	709.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26215.0	NR_105979	102465612.0		NR_105979	ENSMUSG00000099199	Mir7012	Gm27370|mmu-mir-7012	microRNA 7012	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-106549793-2	chr3	106549293	106550293	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286987, intron 1 of 7)	intron (NM_001286987, intron 1 of 7)	-1991.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	12.5	23.0	15.0	12.5	22.0	13.0
Merged-chr3-4361834-2	chr3	4361334	4362334	+	709.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-436874.0	NR_045272	100503859.0	Mm.75172	NR_045272	ENSMUSG00000098659	1110015O18Rik	-	RIKEN cDNA 1110015O18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86506910-2	chr1	86506410	86507410	+	709.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19647.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73464482-2	chr2	73463982	73464982	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	B4|SINE|B4	-10593.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-66459781-3	chr18	66459283	66460283	+	709.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021451, intron 1 of 2)	PB1D10|SINE|Alu	1179.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132574912-2	chr7	132574412	132575412	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016978, intron 1 of 9)	intron (NM_016978, intron 1 of 9)	1486.0	NM_016978	18242.0	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69168954-2	chr11	69168454	69169454	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009659, intron 13 of 14)	intron (NM_009659, intron 13 of 14)	11882.0	NM_009659	11686.0	Mm.340329	NM_009659	ENSMUSG00000032807	Alox12b	12R-LOX|Aloxe2|e-LOX2	arachidonate 12-lipoxygenase, 12R type	protein-coding	2.0	0.0	0.0	0.0	0.5	0.0
Merged-chr12-84764042-3	chr12	84763433	84764433	+	709.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 2 of 3)	URR1A|DNA|hAT-Charlie	9179.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70180732-2	chr14	70180232	70181232	+	709.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001271408, exon 21 of 21)	3' UTR (NM_001271408, exon 21 of 21)	-3060.0	NM_145978	213019.0	Mm.283968	NM_145978	ENSMUSG00000022090	Pdlim2	4732462F18Rik|Slim	PDZ and LIM domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34803203-2	chr2	34802703	34803703	+	709.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-3291.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155630666-1	chr2	155630166	155631166	+	709.0	f1_c57bl6.idr	intron (NM_001085378, intron 31 of 41)	intron (NM_001085378, intron 31 of 41)	7786.0	NR_030757	735275.0		NR_030757	ENSMUSG00000076312	Mir499	Mirn499|mir-499|mmu-mir-499	microRNA 499	ncRNA	1.5	0.0	0.0	0.0	3.0	1.0
Merged-chr1-191840095-2	chr1	191839595	191840595	+	709.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18622.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56469708-2	chr17	56469208	56470208	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252455, intron 1 of 27)	MIRb|SINE|MIR	6772.0	NM_001252455	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60912592-4	chr11	60912105	60913105	+	709.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025294, intron 1 of 2)	intron (NM_025294, intron 1 of 2)	1187.0	NM_025294	24083.0	Mm.22780	NM_025294	ENSMUSG00000018931	Natd1	AI256713|F3-2|Gm16515|Gtlf3b	N-acetyltransferase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-106841641-2	chr4	106841145	106842145	+	709.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36638.0	NM_001347159	329910.0	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	0.0	0.0	3.0	0.0	6.5	0.0
Merged-chr19-5880872-2	chr19	5880372	5881372	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134154, intron 4 of 5)	intron (NM_134154, intron 4 of 5)	3050.0	NM_001361974	107375.0	Mm.5323	NM_134154	ENSMUSG00000024818	Slc25a45	AW491445	solute carrier family 25, member 45	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66351210-2	chr9	66350710	66351710	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145617, intron 1 of 77)	intron (NM_145617, intron 1 of 77)	760.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67384420-2	chr17	67383920	67384920	+	709.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29929.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	6.5	3.0	3.5	9.0	0.0	1.5
Merged-chr10-95290935-2	chr10	95290435	95291435	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	32774.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80028524-2	chr7	80028024	80029024	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	2296.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	3.5	11.0	14.0	3.0	16.0	14.5
Merged-chr5-65389827-3	chr5	65389308	65390308	+	709.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011292, intron 4 of 7)	intron (NM_011292, intron 4 of 7)	1623.0	NM_011292	20005.0	Mm.300271	NM_011292	ENSMUSG00000047215	Rpl9	-	ribosomal protein L9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102455089-2	chr12	102454586	102455586	+	709.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-14048.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	170.0	356.5	332.5	166.0	288.0	274.5
Merged-chr11-86483254-2	chr11	86482754	86483754	+	709.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-1403.0	NM_029788	76892.0	Mm.262707	NM_029788	ENSMUSG00000020521	Rnft1	0610013E23Rik|AV007605	ring finger protein, transmembrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109614682-4	chr8	109614182	109615182	+	709.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001286454, exon 1 of 33)	exon (NM_001286454, exon 1 of 33)	165.0	NM_181544	244646.0	Mm.436810	NM_181544	ENSMUSG00000048827	Pkd1l3	-	polycystic kidney disease 1 like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34112167-1	chr1	34111667	34112667	+	709.0	f0_balb.idr	intron (NM_001276764, intron 5 of 102)	intron (NM_001276764, intron 5 of 102)	-5192.0	NR_105861	102466987.0		NR_105861	ENSMUSG00000105982	Mir6896	mmu-mir-6896	microRNA 6896	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73691993-2	chr12	73691493	73692493	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 3 of 13)	intron (NM_008856, intron 3 of 13)	107197.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-3017136-1	chr9	3016636	3017636	+	709.0	f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	21607.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-43955617-2	chr16	43955141	43956141	+	709.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_027801, intron 12 of 15)	intron (NM_027801, intron 12 of 15)	23409.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	20.5	7.0	14.0	6.0	3.0	6.5
Merged-chr3-109239060-1	chr3	109238560	109239560	+	709.0	f1_c57bl6.idr	Intergenic	Intergenic	-101623.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	9.0	22.0	10.0	5.0	11.0	4.5
Merged-chr12-102377926-3	chr12	102377396	102378396	+	709.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 7 of 9)	intron (NM_177620, intron 7 of 9)	61917.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150542899-2	chr4	150542399	150543399	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	109275.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.0	4.5	2.0	0.0	4.5	2.0
Merged-chr4-13271991-1	chr4	13271491	13272491	+	709.0	f0_balb.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	365154.0	NM_001171801	208820.0	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122104407-2	chr5	122103907	122104907	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010861, intron 4 of 6)	intron (NM_010861, intron 4 of 6)	3456.0	NM_010861	17906.0	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	0.0	0.0	0.0	11.0	0.0	2.0
Merged-chr18-68820091-1	chr18	68819591	68820591	+	709.0	f0_balb.idr	Intergenic	Intergenic	80691.0	NR_105774	102465183.0		NR_105774	ENSMUSG00000099300	Mir6356	Gm27461|mmu-mir-6356	microRNA 6356	ncRNA	0.0	2.0	0.0	0.0	7.5	0.0
Merged-chr10-53443105-3	chr10	53442621	53443621	+	709.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33239.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119152261-1	chr2	119151761	119152761	+	709.0	f1_c57bl6.idr	intron (NM_001033136, intron 4 of 12)	intron (NM_001033136, intron 4 of 12)	4773.0	NM_001033136	67809.0	Mm.475909	NM_001033136	ENSMUSG00000070730	Rmdn3	1200015F23Rik|AI131757|Fam82a2|Ptpip51|RMD-3|Rmd3	regulator of microtubule dynamics 3	protein-coding	5.0	0.0	2.5	0.0	0.0	0.5
Merged-chr10-80013449-2	chr10	80012949	80013949	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347081, intron 40 of 45)	intron (NM_001347081, intron 40 of 45)	-3223.0	NM_001142701	70719.0	Mm.243954	NM_027521	ENSMUSG00000035697	Arhgap45	6330406L22Rik|AW539505|Ha-1|Hmha1	Rho GTPase activating protein 45	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-53592645-2	chr5	53592145	53593145	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359152, intron 1 of 9)	intron (NM_001359152, intron 1 of 9)	2159.0	NM_001080927	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79674481-2	chr2	79673981	79674981	+	709.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-33299.0	NM_172420	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86443732-2	chr1	86443232	86444232	+	709.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	17403.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-36971179-2	chr14	36970679	36971679	+	709.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	-2415.0	NM_027045	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70541440-2	chr11	70540940	70541940	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361935, intron 4 of 23)	intron (NM_001361935, intron 4 of 23)	1168.0	NM_001302476	18806.0	Mm.260177	NM_008876	ENSMUSG00000020828	Pld2	PLD1C	phospholipase D2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-19691084-1	chr13	19690584	19691584	+	709.0	f1_c57bl6.idr	intron (NM_001167909, intron 5 of 14)	intron (NM_001167909, intron 5 of 14)	6676.0	NM_001167909	73412.0	Mm.279939	NM_181591	ENSMUSG00000041138	Nme8	1700056P15Rik|Sptrx-2|Txndc3	NME/NM23 family member 8	protein-coding	14.5	20.5	10.0	7.5	36.0	19.5
Merged-chr2-128863963-3	chr2	128863436	128864436	+	708.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024237)	promoter-TSS (NM_024237)	4.0	NM_024237	70370.0	Mm.5107	NM_024237	ENSMUSG00000027386	Fbln7	1600015H20Rik|AI464334|TM14	fibulin 7	protein-coding	0.0	0.0	0.5	12.5	3.5	3.0
Merged-chr8-122575375-3	chr8	122574900	122575900	+	708.904724	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009698, intron 3 of 4)	intron (NM_009698, intron 3 of 4)	1507.0	NM_009698	11821.0	Mm.1786	NM_009698	ENSMUSG00000006589	Aprt	C85684	adenine phosphoribosyl transferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28736116-5	chr17	28735604	28736604	+	708.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168508, intron 8 of 11)	PB1D10|SINE|Alu	-33213.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-21272410-5	chr17	21271908	21272908	+	708.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11981.0	NM_134199	171233.0	Mm.222636	NM_134199	ENSMUSG00000050102	Vmn1r235	V1rf2	vomeronasal 1 receptor 235	protein-coding	0.5	0.0	0.0	1.0	0.0	0.0
Merged-chr13-111792629-3	chr13	111792132	111793132	+	708.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	16361.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44539420-3	chr11	44538923	44539923	+	708.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 3 of 5)	intron (NM_001166553, intron 3 of 5)	20046.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	20.5	67.0	46.5	22.5	91.0	39.0
Merged-chr5-140818806-3	chr5	140818301	140819301	+	708.849976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 1 of 3)	intron (NM_010302, intron 1 of 3)	11630.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93317049-2	chr10	93316549	93317549	+	708.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152777)	promoter-TSS (NR_152777)	-354.0	NR_152777	102635316.0	Mm.404570	NR_152777	ENSMUSG00000111531	Gm32688	-	predicted gene, 32688	ncRNA	7.0	0.0	0.5	0.0	0.0	2.5
Merged-chr12-75713011-2	chr12	75712511	75713511	+	708.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	22718.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36710564-2	chr16	36710064	36711064	+	708.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 3 of 7)	intron (NM_001285788, intron 3 of 7)	16586.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103288512-2	chr11	103288012	103289012	+	708.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21111.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	0.5	0.0	1.5	0.0	2.0	1.0
Merged-chr7-29067931-2	chr7	29067431	29068431	+	708.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_009109, intron 57 of 105)	intron (NM_009109, intron 57 of 105)	15763.0	NR_035489	100316710.0		NR_035489	ENSMUSG00000089219	Mir1963	mir-1963|mmu-mir-1963	microRNA 1963	ncRNA	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr4-133197852-3	chr4	133197381	133198381	+	708.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153423, exon 9 of 9)	3' UTR (NM_153423, exon 9 of 9)	2226.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	1.5	1.5	0.0	2.0	1.5	0.0
Merged-chr13-90967672-3	chr13	90967179	90968179	+	708.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025770, intron 5 of 7)	intron (NM_025770, intron 5 of 7)	44557.0	NM_024175	66475.0	Mm.306302	NM_024175	ENSMUSG00000049517	Rps23	2410044J15Rik	ribosomal protein S23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98772785-3	chr15	98772285	98773285	+	708.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011718, exon 5 of 5)	exon (NM_011718, exon 5 of 5)	5365.0	NM_011718	22410.0	Mm.4709	NM_011718	ENSMUSG00000022996	Wnt10b	Wnt12	wingless-type MMTV integration site family, member 10B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95799661-3	chr13	95799197	95800197	+	708.777771	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_027711, intron 2 of 35)	L2b|LINE|L2	92225.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	2.0	17.5	20.5	11.0	5.0	16.5
Merged-chr19-40692001-3	chr19	40691525	40692525	+	708.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	32255.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	26.5	41.5	13.0	24.0	63.5	31.5
Merged-chr3-87082568-2	chr3	87082068	87083068	+	708.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_130867, exon 16 of 16)	3' UTR (NM_130867, exon 16 of 16)	-83228.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121580731-2	chr10	121580231	121581231	+	708.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_019786, intron 2 of 20)	intron (NM_019786, intron 2 of 20)	6063.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	5.0	12.5	13.0	14.5	12.0	13.5
Merged-chr13-43399677-2	chr13	43399177	43400177	+	708.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_023554, intron 3 of 7)	intron (NM_023554, intron 3 of 7)	1301.0	NM_023554	70078.0	Mm.439927	NM_023554	ENSMUSG00000063200	Nol7	2210008F15Rik|5730556I21Rik|NOP27|RARG-1	nucleolar protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47790785-2	chr17	47790285	47791285	+	708.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161722, intron 8 of 8)	intron (NM_001161722, intron 8 of 8)	5041.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.5	3.0	1.0	0.0	1.5	5.0
Merged-chr1-123933318-2	chr1	123932777	123933777	+	708.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_199021, intron 1 of 25)	L1_Mus2|LINE|L1	112282.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-89412390-4	chr7	89411901	89412901	+	708.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8035.0	NM_008055	14366.0	Mm.86755	NM_008055	ENSMUSG00000049791	Fzd4	Fz4	frizzled class receptor 4	protein-coding	2.0	0.0	2.0	2.0	13.5	6.0
Merged-chr9-106675684-4	chr9	106675210	106676210	+	708.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104459, intron 2 of 4)	intron (NR_104459, intron 2 of 4)	10106.0	NM_011573	21767.0	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	1.5	0.0	1.0	3.0	0.0	1.5
Merged-chr8-68208046-4	chr8	68207537	68208537	+	708.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-68491.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	21.0	44.0	19.0	26.0	22.0	25.5
Merged-chr10-125350526-3	chr10	125350048	125351048	+	708.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-21585.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-99211870-3	chr6	99211375	99212375	+	708.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	54640.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-72414964-2	chr4	72414464	72415464	+	708.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	213720.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69924243-3	chr12	69923747	69924747	+	708.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178628, intron 2 of 14)	PB1D10|SINE|Alu	-31084.0	NM_201519	399510.0	Mm.291936	NM_201519	ENSMUSG00000034761	Map4k5	4432415E19Rik|GCKR|KHS|MAPKKKK5	mitogen-activated protein kinase kinase kinase kinase 5	protein-coding	2.5	2.0	0.0	1.5	0.0	7.0
Merged-chr9-44378631-2	chr9	44378131	44379131	+	708.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021395)	promoter-TSS (NM_021395)	-859.0	NM_021395	12282.0	Mm.116721	NM_021395	ENSMUSG00000032115	Hyou1	AI415631|CBP-140|Cab140|Grp170|Orp150	hypoxia up-regulated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-110396013-5	chr8	110395498	110396498	+	708.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172916, intron 12 of 86)	intron (NM_172916, intron 12 of 86)	106358.0	NR_105058	100861869.0	Mm.84499	NR_105058		Gm21283	-	predicted gene, 21283	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107783696-2	chr4	107783198	107784198	+	708.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18561.0	NR_033496	16975.0	Mm.442134	NM_053073	ENSMUSG00000028613	Lrp8	4932703M08Rik|AA921429|AI848122|ApoER2|Lr8b	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	protein-coding	0.0	6.0	5.0	0.0	4.0	0.0
Merged-chr9-36970805-4	chr9	36970278	36971278	+	708.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148950, intron 2 of 11)	intron (NM_148950, intron 2 of 11)	137204.0	NM_001357611	235180.0	Mm.5264	NM_183171	ENSMUSG00000032118	Fez1	UNC-76|UNC76	fasciculation and elongation protein zeta 1 (zygin I)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74339324-4	chr1	74338846	74339846	+	708.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019999, intron 1 of 8)	intron (NM_019999, intron 1 of 8)	6736.0	NM_019999	56695.0	Mm.384726	NM_019999	ENSMUSG00000026179	Pnkd	2210013N15Rik|2810403H05Rik|AI854243|Brp17|MNCb-5687|MR-1|Tahccp2	paroxysmal nonkinesiogenic dyskinesia	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54301883-4	chr13	54301380	54302380	+	708.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69469.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-34535964-2	chr15	34535464	34536464	+	708.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40653.0	NM_152894	67724.0	Mm.248779	NM_026340	ENSMUSG00000022325	Pop1	4932434G09Rik	processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147343717-2	chr4	147343217	147344217	+	708.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	167851.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117945144-3	chr2	117944644	117945644	+	708.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	123216.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	5.0	2.5	1.0	1.0	17.0	3.5
Merged-chr8-35607893-3	chr8	35607384	35608384	+	708.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-18864.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	14.5	1.5	5.0	6.5	2.0	8.0
Merged-chr4-3715903-3	chr4	3715482	3716482	+	708.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028126, exon 1 of 1)	non-coding (NR_028126, exon 1 of 1)	1018.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-5860088-1	chr5	5859588	5860588	+	708.5	f0_balb.idr	Intergenic	RLTR28|LTR|ERVL	-110771.0	NM_027399	70358.0	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85935719-2	chr1	85935219	85936219	+	708.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	7236.0	NR_037692	71141.0	Mm.314965	NR_037692	ENSMUSG00000026224	4933407L21Rik	-	RIKEN cDNA 4933407L21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157425415-2	chr2	157424915	157425915	+	708.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 1 of 13)	intron (NM_001025395, intron 1 of 13)	1122.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	6.0	2.5	2.5	6.0	2.5	2.5
Merged-chr2-34798534-2	chr2	34798034	34799034	+	708.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145522, intron 1 of 7)	intron (NM_145522, intron 1 of 7)	1378.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24800570-2	chr5	24800070	24801070	+	708.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41791.0	NM_053075	19744.0	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120175248-2	chr1	120174748	120175748	+	708.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028439, intron 5 of 5)	intron (NM_028439, intron 5 of 5)	54061.0	NM_001172074	73103.0	Mm.271602	NM_028439	ENSMUSG00000026388	3110009E18Rik	-	RIKEN cDNA 3110009E18 gene	protein-coding	3.5	1.5	1.5	3.5	1.5	1.5
Merged-chr9-86451806-4	chr9	86451324	86452324	+	708.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027394, exon 2 of 10)	exon (NM_027394, exon 2 of 10)	13092.0	NM_027394	70348.0	Mm.53469	NM_027394	ENSMUSG00000032415	Ube2cbp	2610018I03Rik|Ube3d	ubiquitin-conjugating enzyme E2C binding protein	protein-coding	3.0	9.5	0.0	3.0	3.0	0.0
Merged-chr2-61816156-2	chr2	61815656	61816656	+	708.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	11703.0	NM_009322	21375.0	Mm.308525	NM_009322	ENSMUSG00000035033	Tbr1	-	T-box brain gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-103300742-2	chr12	103300242	103301242	+	708.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14027.0	NR_136894	102632488.0	Mm.109435	NR_136894	ENSMUSG00000100789	Gm29508	-	predicted gene 29508	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94492830-2	chr16	94492330	94493330	+	708.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33799.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-6493437-2	chr18	6492935	6493935	+	708.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007935, intron 1 of 13)	intron (NM_007935, intron 1 of 13)	-2578.0	NM_001276350	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	0.0	0.0	4.5	4.5	5.0	2.0
Merged-chr18-36396064-2	chr18	36395564	36396564	+	708.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47440.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38743173-2	chr6	38742673	38743673	+	708.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001294144, exon 6 of 15)	exon (NM_001294144, exon 6 of 15)	80104.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-15470300-4	chr3	15469796	15470796	+	708.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43869.0	NM_001002898	320832.0	Mm.330924	NM_178792	ENSMUSG00000095788	Sirpb1a	9930027N05Rik|SIRP-beta|Sirpb|Sirpb1	signal-regulatory protein beta 1A	protein-coding	1.0	2.5	3.5	1.0	1.0	2.5
Merged-chr15-50360809-2	chr15	50360309	50361309	+	708.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	528240.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-102894535-2	chr13	102894035	102895035	+	708.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	134280.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145280782-2	chr7	145280282	145281282	+	708.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132643, intron 1 of 22)	intron (NR_132643, intron 1 of 22)	3229.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	2.0	7.0	2.5	1.0	0.0	2.5
Merged-chr1-178407465-2	chr1	178406965	178407965	+	708.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026626, intron 1 of 6)	B1_Mus2|SINE|Alu	1447.0	NM_026626	68226.0	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	0.0	2.5	0.0	0.0	0.0	0.0
Merged-chr7-126696907-2	chr7	126696407	126697407	+	708.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175103)	TTS (NM_175103)	907.0	NM_175103	66162.0	Mm.358692	NM_175103	ENSMUSG00000047721	Bola2	1110025L05Rik|BolA-2	bolA-like 2 (E. coli)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-137414233-2	chr7	137413733	137414733	+	708.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-3477.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166473241-2	chr2	166472741	166473741	+	708.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25790.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99477642-2	chr15	99477142	99478142	+	708.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1|DNA|hAT-Tip100	-2912.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	0.0	2.5	0.0	2.5	0.0	1.5
Merged-chr4-21723103-2	chr4	21722603	21723603	+	708.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-4598.0	NM_001290422	51813.0	Mm.278584	NM_016746	ENSMUSG00000028252	Ccnc	AI451004|AU020987|CG1C	cyclin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-29847516-2	chr16	29847017	29848017	+	708.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20A4|LTR|ERVK	131607.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	8.5	14.0	1.0	7.5	22.0	1.0
Merged-chr3-55355823-2	chr3	55355323	55356323	+	708.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357475, intron 3 of 16)	intron (NM_001357475, intron 3 of 16)	-105905.0	NM_001195539	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130839057-2	chr4	130838557	130839557	+	708.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46520.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113483543-2	chr13	113483043	113484043	+	708.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 3 of 6)	intron (NR_045501, intron 3 of 6)	19301.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127778842-2	chr7	127778342	127779342	+	708.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178029, intron 3 of 18)	intron (NM_178029, intron 3 of 18)	1453.0	NM_178029	233904.0	Mm.435494	NM_010940	ENSMUSG00000042308	Setd1a	BC010250|KMT2F|Nsccn1|mKIAA0339|mNSC1	SET domain containing 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3687846-2	chr8	3687346	3688346	+	708.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253745, intron 7 of 9)	intron (NM_001253745, intron 7 of 9)	2544.0	NM_001253739	14128.0	Mm.1233	NM_013517	ENSMUSG00000005540	Fcer2a	CD23|Fce2|Fcer2|Ly-42	Fc receptor, IgE, low affinity II, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153298612-2	chr2	153298112	153299112	+	708.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008444, intron 1 of 8)	intron (NM_008444, intron 1 of 8)	7196.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102446228-2	chr11	102445728	102446728	+	708.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199200, intron 1 of 7)	intron (NM_199200, intron 1 of 7)	1435.0	NM_199200	217219.0	Mm.259924	NM_199200	ENSMUSG00000034685	Fam171a2	-	family with sequence similarity 171, member A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-22003731-2	chr10	22003231	22004231	+	708.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9065.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59263994-2	chr10	59263494	59264494	+	708.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	42072.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19071176-2	chr7	19070676	19071676	+	708.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031255, intron 5 of 5)	B2_Mm2|SINE|B2	-5024.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44569750-4	chr9	44569259	44570259	+	708.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35133.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	14.5	30.5	25.5	19.5	28.0	12.5
Merged-chr11-77458430-3	chr11	77457925	77458925	+	708.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291190, exon 14 of 14)	3' UTR (NM_001291190, exon 14 of 14)	-5488.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-84016269-2	chr6	84015769	84016769	+	708.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 1 of 54)	intron (NM_001077694, intron 1 of 54)	-3117.0	NM_001310152	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27730220-2	chr2	27729720	27730720	+	708.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	19637.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56705805-2	chr18	56705305	56706305	+	708.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2008.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-123207654-2	chr6	123207154	123208154	+	708.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-22189.0	NM_001190320	56620.0	Mm.271782	NM_020001	ENSMUSG00000023349	Clec4n	Clec6a|Clecsf10|Nkcl	C-type lectin domain family 4, member n	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-51701592-2	chr15	51701092	51702092	+	708.458374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	163869.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	0.0	0.0	1.0	1.5	2.0	0.5
Merged-chr6-97211357-4	chr6	97210882	97211882	+	708.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022992, intron 1 of 2)	intron (NM_022992, intron 1 of 2)	590.0	NM_022992	65106.0	Mm.291014	NM_022992	ENSMUSG00000035199	Arl6ip5	5930404D22Rik|AV001879|Aip-5|Gtrap3-18|addiscin	ADP-ribosylation factor-like 6 interacting protein 5	protein-coding	35.5	81.0	100.5	54.0	209.0	154.5
Merged-chr3-108786753-3	chr3	108786249	108787249	+	708.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	47091.0	NM_177859	329738.0	Mm.72322	NM_177859	ENSMUSG00000049565	Aknad1	4921525H12Rik	AKNA domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55818275-5	chr16	55817760	55818760	+	708.428589	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159394, exon 5 of 12)	exon (NM_001159394, exon 5 of 12)	3878.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-115096209-3	chr4	115095659	115096659	+	708.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7451.0	NM_001164557	67182.0	Mm.30181	NM_026018	ENSMUSG00000028716	Pdzk1ip1	0610007F13Rik|2700030M23Rik|AU046042|Map17	PDZK1 interacting protein 1	protein-coding	0.0	3.5	0.0	0.0	0.0	0.0
Merged-chr14-61673531-2	chr14	61673031	61674031	+	708.416626	f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	URR1A|DNA|hAT-Charlie	8842.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-12813667-3	chr10	12813170	12814170	+	708.366638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 1 of 73)	intron (NM_011682, intron 1 of 73)	48065.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	12.5	22.0	10.5	16.0	17.5	8.5
Merged-chr2-165954429-2	chr2	165953928	165954928	+	708.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-38209.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	35.5	136.5	111.0	59.0	136.0	95.5
Merged-chr5-64268008-3	chr5	64267508	64268508	+	708.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 5 of 18)	intron (NM_001289514, intron 5 of 18)	37651.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	6.5	16.0	11.5	0.0	0.5	19.5
Merged-chr13-56633896-3	chr13	56633374	56634374	+	708.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155548, intron 12 of 16)	intron (NR_155548, intron 12 of 16)	24288.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78114840-3	chr11	78114338	78115338	+	708.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145430, intron 1 of 2)	intron (NM_145430, intron 1 of 2)	20165.0	NM_145430	216971.0	Mm.119387	NM_145430	ENSMUSG00000037750	Fam222b	9630020I17Rik	family with sequence similarity 222, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77776239-2	chr11	77775739	77776739	+	708.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291212)	promoter-TSS (NM_001291212)	-996.0	NM_001291213	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-70601522-2	chr18	70601022	70602022	+	708.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_010773, intron 3 of 6)	intron (NM_010773, intron 3 of 6)	33230.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51600499-2	chr11	51599999	51600999	+	708.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010448, exon 7 of 7)	3' UTR (NM_010448, exon 7 of 7)	6382.0	NM_001048061	15384.0	Mm.256875	NM_010448	ENSMUSG00000020358	Hnrnpab	3010025C11Rik|CBF-A|Cgbfa|Hnrpab	heterogeneous nuclear ribonucleoprotein A/B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72831542-2	chr6	72831039	72832039	+	708.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42494.0	NM_009332	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	2.5	5.0	3.0	0.0	0.0	1.0
Merged-chr17-23549629-2	chr17	23549129	23550129	+	708.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1170.0	NR_126485	320020.0	Mm.445111	NR_126484		6330415G19Rik	-	RIKEN cDNA 6330415G19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46080942-2	chr11	46080442	46081442	+	708.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291890, intron 3 of 22)	MLT1C|LTR|ERVL-MaLR	-21328.0	NR_106177	102465996.0		NR_106177	ENSMUSG00000098942	Mir8100	Gm27638|mmu-mir-8100	microRNA 8100	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4002723-2	chr19	4002223	4003223	+	708.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021791)	promoter-TSS (NM_021791)	-662.0	NM_021791	60425.0	Mm.266972	NM_021791	ENSMUSG00000024871	Doc2g	D830013O18Rik	double C2, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74240361-4	chr1	74239914	74240914	+	708.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 2 of 10)	intron (NM_001357387, intron 2 of 10)	3897.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7829937-3	chr9	7829486	7830486	+	708.200012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007465, intron 2 of 7)	intron (NM_007465, intron 2 of 7)	6820.0	NM_001291503	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43884832-2	chr19	43884332	43885332	+	708.1999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_028029, intron 4 of 15)	MTE2a|LTR|ERVL-MaLR	-5064.0	NM_001306088	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131973405-3	chr1	131972839	131973839	+	708.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145977, intron 1 of 4)	intron (NM_145977, intron 1 of 4)	2730.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	3.5	46.0	31.0	14.5	27.0	27.0
Merged-chr10-93162751-2	chr10	93162251	93163251	+	708.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035452)	promoter-TSS (NR_035452)	-34.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	18.0	88.5	48.5	35.5	64.5	80.5
Merged-chr6-100647440-2	chr6	100646940	100647940	+	708.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_181590, intron 6 of 10)	RLTR20C2_MM|LTR|ERVK	23717.0	NM_181590	72171.0	Mm.256022	NM_181590	ENSMUSG00000035378	Shq1	2810403P18Rik|Grim-1	SHQ1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117829661-2	chr4	117829161	117830161	+	708.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5597.0	NM_008135	14664.0	Mm.244549	NM_008135	ENSMUSG00000028542	Slc6a9	Glyt-1|Glyt1	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr6-24963946-3	chr6	24963457	24964457	+	708.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7832.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67259884-3	chr5	67259441	67260441	+	708.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028975)	promoter-TSS (NM_028975)	-624.0	NM_001285452	67878.0	Mm.23217	NM_028975	ENSMUSG00000037720	Tmem33	1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83	transmembrane protein 33	protein-coding	12.0	32.5	48.5	26.5	33.0	28.5
Merged-chr19-17165164-3	chr19	17164640	17165640	+	708.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181348, intron 9 of 19)	intron (NM_181348, intron 9 of 19)	174365.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47652748-4	chr9	47652239	47653239	+	708.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	122387.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	21.0	11.0	19.0	7.5	22.0	11.0
Merged-chr9-25514900-2	chr9	25514400	25515400	+	708.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	33303.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43361675-2	chr7	43361175	43362175	+	708.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	10334.0	NM_145581	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-110062911-3	chr13	110062409	110063409	+	708.044434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360099, intron 4 of 4)	intron (NM_001360099, intron 4 of 4)	159100.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.0	1.5	0.0	0.0	1.5	0.0
Merged-chr4-155519487-4	chr4	155518986	155519986	+	708.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160016, intron 2 of 11)	intron (NM_001160016, intron 2 of 11)	28125.0	NM_001160016	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	4.0	6.5	5.0	3.5	4.0	8.5
Merged-chr1-87246238-2	chr1	87245738	87246738	+	708.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18115.0	NM_028889	98363.0	Mm.247951	NM_028889	ENSMUSG00000026255	Efhd1	4931430I01Rik|AI452351|PP3051|mitocalcin	EF hand domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117255410-2	chr8	117254910	117255910	+	708.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1609.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94373023-1	chr8	94372523	94373523	+	708.0	f0_balb.idr	Intergenic	RLTR33|LTR|ERVK	-13406.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142871139-2	chr5	142870639	142871639	+	708.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033312)	TTS (NM_001033312)	24099.0	NM_001033312	231863.0	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11186197-2	chr2	11185697	11186697	+	708.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	13815.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-126978997-1	chr3	126978497	126979497	+	708.0	f1_balb.idr	intron (NM_178655, intron 4 of 24)	intron (NM_178655, intron 4 of 24)	19455.0	NM_178655	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	10.5	2.0	5.0	16.5	0.0	1.0
Merged-chr11-69769992-2	chr11	69769492	69770492	+	708.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029348, intron 1 of 3)	L2|LINE|L2	4080.0	NM_029348	75580.0	Mm.426361	NM_029348	ENSMUSG00000018750	Zbtb4	2310026P19Rik|9230111I22Rik|mKIAA1538	zinc finger and BTB domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146752960-1	chr3	146752460	146753460	+	708.0	f0_balb.idr	intron (NM_001164200, intron 3 of 9)	intron (NM_001164200, intron 3 of 9)	17278.0	NM_001164198	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30423996-1	chr7	30423496	30424496	+	708.0	f1_c57bl6.idr	intron (NM_172142, intron 2 of 10)	intron (NM_172142, intron 2 of 10)	721.0	NM_172142	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	16.5	15.5	15.5	11.5	24.0	18.0
Merged-chr6-122636897-2	chr6	122636397	122637397	+	708.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	10473.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	30.0	28.0	29.0	10.0	5.0	8.5
Merged-chr7-79883716-1	chr7	79883216	79884216	+	708.0	f0_balb.idr	intron (NM_009682, intron 4 of 5)	intron (NM_009682, intron 4 of 5)	-35506.0	NM_008486	16790.0	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106737426-2	chr11	106736926	106737926	+	708.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13800.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	3.5	11.5	5.0	2.5	18.5	13.0
Merged-chr17-34133481-1	chr17	34132981	34133981	+	708.0	f1_c57bl6.idr	intron (NM_001360530, intron 1 of 5)	intron (NM_001360530, intron 1 of 5)	7963.0	NM_001360530	14998.0	Mm.16373	NM_010386	ENSMUSG00000037649	H2-DMa	H-2Ma|H2-Ma	histocompatibility 2, class II, locus DMa	protein-coding	1.5	1.0	0.0	0.0	1.5	1.0
Merged-chr10-40143085-2	chr10	40142585	40143585	+	708.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028247)	promoter-TSS (NM_028247)	-831.0	NM_001114332	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45546625-2	chr9	45546125	45547125	+	708.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-115393.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19298317-2	chr7	19297817	19298817	+	708.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	7248.0	NM_001025364	20167.0	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-97253996-2	chr13	97253496	97254496	+	708.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007930)	TTS (NM_007930)	12891.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-31932685-2	chr9	31932185	31933185	+	708.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19400.0	NM_013800	12023.0	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165853748-1	chr2	165853248	165854248	+	708.0	f1_c57bl6.idr	intron (NM_001252587, intron 2 of 11)	(CAGAGA)n|Simple_repeat|Simple_repeat	4425.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	15.0	12.5	22.0	16.5	18.5	11.0
Merged-chr13-99192798-1	chr13	99192298	99193298	+	708.0	f0_balb.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	7975.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	8.0	8.5	5.5	4.5	2.0	4.0
Merged-chr18-36405892-2	chr18	36405392	36406392	+	708.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026027, intron 3 of 3)	intron (NM_026027, intron 3 of 3)	48603.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-81850417-2	chr16	81849917	81850917	+	708.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	649720.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9758489-1	chr18	9757989	9758989	+	708.0	f0_balb.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	50841.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	2.5	7.0	1.0	10.5	3.5	7.0
Merged-chr3-96527447-2	chr3	96526947	96527947	+	708.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027126, exon 3 of 4)	exon (NM_027126, exon 3 of 4)	2262.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84230150-2	chr8	84229650	84230650	+	708.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172503, intron 3 of 13)	intron (NM_172503, intron 3 of 13)	6892.0	NM_172503	212168.0	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	2.0	8.0	0.5	0.0	10.0	0.0
Merged-chr16-38562311-3	chr16	38561808	38562808	+	708.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205287)	promoter-TSS (NM_001205287)	-506.0	NM_001205287	67846.0	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92116081-2	chr1	92115581	92116581	+	708.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207225, intron 2 of 26)	intron (NM_207225, intron 2 of 26)	64260.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr10-81474586-2	chr10	81474086	81475086	+	708.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001311126, exon 1 of 12)	5' UTR (NM_001311126, exon 1 of 12)	258.0	NM_001311126	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-25122241-2	chr18	25121741	25122741	+	708.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289654, intron 22 of 24)	intron (NM_001289654, intron 22 of 24)	43724.0	NM_001142697	66648.0	Mm.263189	NM_001004361	ENSMUSG00000024269	Tpgs2	5730437P09Rik|5730494M16Rik|AI666318|Pgs2	tubulin polyglutamylase complex subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126136359-2	chr4	126135859	126136859	+	708.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 7 of 10)	(CA)n|Simple_repeat|Simple_repeat	-11644.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102248849-2	chr15	102248349	102249349	+	708.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011244, intron 3 of 9)	intron (NM_011244, intron 3 of 9)	-2349.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98715937-1	chr13	98715437	98716437	+	708.0	f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-21106.0	NM_001025606	380863.0	Mm.28264	NM_001025606	ENSMUSG00000052485	Tmem171	Gm905	transmembrane protein 171	protein-coding	1.0	2.5	0.0	0.0	0.5	0.0
Merged-chr2-165816438-1	chr2	165815938	165816938	+	708.0	f1_c57bl6.idr	intron (NM_027230, intron 13 of 23)	intron (NM_027230, intron 13 of 23)	41735.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	1.5	4.5	0.0	0.0	6.0	1.0
Merged-chr7-132347117-2	chr7	132346617	132347617	+	708.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29889.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87704194-2	chr1	87703694	87704694	+	708.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 18 of 26)	intron (NM_001110192, intron 18 of 26)	-51817.0	NM_029846	77040.0	Mm.272972	NM_029846	ENSMUSG00000026289	Atg16l1	1500009K01Rik|Apg16l|Atg16l|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-90468337-2	chr10	90467837	90468837	+	708.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359241, intron 12 of 25)	B1_Mus1|SINE|Alu	-107390.0	NM_001177397	77531.0	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1|AIDA-1b|C030032C09Rik|E530015N03Rik|EB-1|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr16-66424795-2	chr16	66424295	66425295	+	708.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-232323.0	NR_040512	75501.0	Mm.394300	NR_040512	ENSMUSG00000092599	1700010K23Rik	-	RIKEN cDNA 1700010K23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150910289-2	chr2	150909789	150910789	+	708.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027014, intron 1 of 6)	intron (NM_027014, intron 1 of 6)	695.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171409836-2	chr1	171409336	171410336	+	708.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001005508, exon 12 of 12)	3' UTR (NM_001005508, exon 12 of 12)	-1477.0	NM_001305678	22278.0	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	8.0	44.5	17.5	16.5	21.5	8.5
Merged-chr2-28570551-2	chr2	28570051	28571051	+	708.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_148928, intron 7 of 11)	intron (NM_148928, intron 7 of 11)	-7148.0	NM_009885	12613.0	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91455563-1	chr1	91455063	91456063	+	708.0	f0_c57.idr	intron (NM_011066, intron 1 of 22)	intron (NM_011066, intron 1 of 22)	3765.0	NM_011066	18627.0	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-119058656-2	chr10	119058156	119059156	+	708.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8157.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0.0	1.5	0.0	0.0	1.5	0.0
Merged-chr3-106568701-1	chr3	106568201	106569201	+	708.0	f0_balb.idr	intron (NM_001025582, intron 5 of 6)	Lx7|LINE|L1	-20899.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	12.5	25.0	17.0	18.5	27.5	22.0
Merged-chr2-131213186-2	chr2	131212686	131213686	+	708.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001291032, exon 4 of 4)	exon (NM_001291032, exon 4 of 4)	2826.0	NR_110992	69596.0	Mm.2937	NM_027129	ENSMUSG00000068264	Ap5s1	0610038L13Rik|2310035K24Rik|AW060727|sigma5	adaptor-related protein 5 complex, sigma 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58427585-2	chr15	58427085	58428085	+	708.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145959, intron 8 of 23)	intron (NM_145959, intron 8 of 23)	12117.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-103426252-1	chr10	103425752	103426752	+	708.0	f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	58444.0	NM_175328	103098.0	Mm.458408	NM_175328	ENSMUSG00000019894	Slc6a15	AA536730|AI326450|AI326451|v7-3	solute carrier family 6 (neurotransmitter transporter), member 15	protein-coding	3.5	0.0	1.5	3.0	1.5	2.5
Merged-chr13-20142090-2	chr13	20141597	20142597	+	708.0	f0_balb.idr|f1_balb.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	51590.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	4.5	20.5	13.5	20.5	42.5	4.5
Merged-chr17-71521771-2	chr17	71521263	71522263	+	708.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023294, intron 3 of 16)	intron (NM_023294, intron 3 of 16)	5094.0	NM_023294	67052.0	Mm.225956	NM_023294	ENSMUSG00000024056	Ndc80	2610020P18Rik|AV139730|HEC|HEC1|Kntc2	NDC80 kinetochore complex component	protein-coding	0.0	0.0	0.5	0.0	0.5	0.0
Merged-chr8-83971903-2	chr8	83971400	83972400	+	708.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-1078.0	NM_008854	18747.0	Mm.19111	NM_008854	ENSMUSG00000005469	Prkaca	PKCD|Pkaca	protein kinase, cAMP dependent, catalytic, alpha	protein-coding	20.5	16.0	8.0	1.5	14.5	4.5
Merged-chr14-47349333-1	chr14	47348833	47349833	+	708.0	f1_balb.idr	Intergenic	B3|SINE|B2	-24527.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	3.5	29.0	14.5	12.0	26.5	26.5
Merged-chr2-128386522-1	chr2	128386022	128387022	+	708.0	f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	42829.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0.0	1.5	2.0	1.0	5.5	1.5
Merged-chr13-28418309-2	chr13	28417809	28418809	+	708.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	275825.0	NM_023746	28078.0	Mm.155058	NM_023746	ENSMUSG00000017064	Prl5a1	1600013P04Rik|D13Wsu14e|Ghd24|PLP-L|Prlpl	prolactin family 5, subfamily a, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120163023-2	chr10	120162523	120163523	+	708.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359184, intron 8 of 11)	intron (NM_001359184, intron 8 of 11)	38574.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-100026205-1	chr14	100025705	100026705	+	708.0	f0_balb.idr	intron (NM_010636, intron 2 of 6)	intron (NM_010636, intron 2 of 6)	123591.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70461107-2	chr11	70460607	70461607	+	708.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001348337, exon 2 of 14)	exon (NM_001348337, exon 2 of 14)	-1123.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83472447-1	chr11	83471947	83472947	+	708.0	f0_balb.idr	promoter-TSS (NM_027427)	promoter-TSS (NM_027427)	-661.0	NM_027427	70439.0	Mm.181050	NM_027427	ENSMUSG00000020680	Taf15	2610111C21Rik|68kDa|TAFII68|Taf2n	TATA-box binding protein associated factor 15	protein-coding	1.5	30.5	12.0	12.0	24.5	10.0
Merged-chr4-46569141-2	chr4	46568641	46569641	+	708.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 1 of 11)	intron (NM_001164804, intron 1 of 11)	-2701.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	0.0	3.0	0.5	2.0	11.0	7.0
Merged-chr11-10429646-2	chr11	10429146	10430146	+	708.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-684370.0	NM_177033	319922.0	Mm.337851	NM_177033	ENSMUSG00000050830	Vwc2	A930041G11Rik|G11|PSST739|UNQ739|cradin	von Willebrand factor C domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125439272-1	chr6	125438772	125439772	+	708.0	f1_balb.idr	Intergenic	Intergenic	55488.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	2.0	4.0	0.5	0.0	2.0	1.0
Merged-chr1-149948575-1	chr1	149948075	149949075	+	708.0	f0_balb.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	12715.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11434451-1	chr16	11433951	11434951	+	708.0	f0_balb.idr	intron (NM_028964, intron 11 of 20)	intron (NM_028964, intron 11 of 20)	28803.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124282907-1	chr6	124282407	124283407	+	708.0	f0_balb.idr	Intergenic	Intergenic	-21744.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16809918-2	chr7	16809418	16810418	+	708.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173430, exon 3 of 3)	3' UTR (NM_173430, exon 3 of 3)	-5971.0	NM_133789	97387.0	Mm.21612	NM_133789	ENSMUSG00000030374	Strn4	C80611|ZIN|zinedin	striatin, calmodulin binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12927076-2	chr13	12926576	12927576	+	708.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_I-int|LTR|ERVK	78254.0	NM_031191	18811.0	Mm.88796	NM_031191	ENSMUSG00000079092	Prl2c2	Ghd2|MRP-1|PLF-1|Plf|Plf1	prolactin family 2, subfamily c, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-19300888-2	chr2	19300382	19301382	+	708.0	f0_balb.idr|f0_c57.idr	intron (NM_001271565, intron 17 of 17)	intron (NM_001271565, intron 17 of 17)	-43435.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-146804763-1	chr1	146804263	146805263	+	708.0	f1_c57bl6.idr	intron (NM_001357572, intron 7 of 8)	ORR1A2|LTR|ERVL-MaLR	307076.0	NM_001145807	215378.0	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4165358-3	chr8	4164876	4165876	+	708.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1191.0	NM_001039578	213027.0	Mm.437106	NM_153536	ENSMUSG00000011832	Evi5l	1700084G18Rik|2310039H16Rik|3110007G05Rik|B130050I23Rik	ecotropic viral integration site 5 like	protein-coding	0.5	1.5	3.0	0.0	5.0	0.0
Merged-chr14-21502810-2	chr14	21502310	21503310	+	708.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_017479, intron 1 of 16)	B4A|SINE|B4	3025.0	NM_017479	54169.0	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151686007-2	chr1	151685507	151686507	+	708.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 5 of 13)	intron (NM_022018, intron 5 of 13)	68720.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130781779-2	chr4	130781279	130782279	+	708.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001159604)	TTS (NM_001159604)	-10758.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-28428221-2	chr6	28427721	28428721	+	708.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019569, intron 1 of 6)	(TG)n|Simple_repeat|Simple_repeat	320.0	NM_019569	56223.0	Mm.31708	NM_019569	ENSMUSG00000029707	Fscn3	-	fascin actin-bundling protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5256632-2	chr6	5256132	5257132	+	708.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173006)	promoter-TSS (NM_173006)	-399.0	NM_173006	269823.0	Mm.9122	NM_173006	ENSMUSG00000029759	Pon3	2810004E20|AI786302	paraoxonase 3	protein-coding	0.0	7.0	0.0	1.0	6.5	0.0
Merged-chr7-132383049-2	chr7	132382549	132383549	+	708.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-65821.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-50114075-1	chr18	50113575	50114575	+	708.0	f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-14126.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	1.5	3.5	4.5	0.0	2.0	1.5
Merged-chr11-107676350-4	chr11	107675843	107676843	+	707.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198298, intron 30 of 31)	intron (NM_198298, intron 30 of 31)	38621.0	NR_105897	102465562.0		NR_105897	ENSMUSG00000098497	Mir6932	Gm27691|mmu-mir-6932	microRNA 6932	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-3741117-6	chr10	3740621	3741621	+	707.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159942, intron 1 of 16)	intron (NM_001159942, intron 1 of 16)	744.0	NM_001159942	213783.0	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	0.0	0.0	4.5	1.0	7.0	0.0
Merged-chr12-102398664-4	chr12	102398159	102399159	+	707.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 10 of 13)	intron (NM_011175, intron 10 of 13)	41154.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	6.5	6.0	5.0	1.0	8.0	5.0
Merged-chr7-127011168-3	chr7	127010656	127011656	+	707.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080638, intron 1 of 14)	intron (NM_080638, intron 1 of 14)	3438.0	NM_080638	78388.0	Mm.228797	NM_080638	ENSMUSG00000030681	Mvp	2310009M24Rik|LRP|VAULT1	major vault protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34281320-3	chr17	34280818	34281818	+	707.888916	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6453.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	10.5	17.5	5.0	2.0	3.0	2.5
Merged-chr2-4601980-2	chr2	4601480	4602480	+	707.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 8 of 11)	intron (NM_001177844, intron 8 of 11)	42226.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64154846-4	chr13	64154324	64155324	+	707.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1625.0	NM_175494	238673.0	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	9.5	21.0	22.0	1.5	25.5	15.0
Merged-chr6-113495190-2	chr6	113494690	113495690	+	707.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_172487, exon 4 of 4)	exon (NM_172487, exon 4 of 4)	6628.0	NM_172487	210673.0	Mm.133060	NM_172487	ENSMUSG00000045009	Prrt3	6330505P20|B230206N24Rik	proline-rich transmembrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17872407-2	chr17	17871894	17872894	+	707.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	11545.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	157.0	290.0	152.5	64.0	217.5	112.5
Merged-chr19-6042381-2	chr19	6041878	6042878	+	707.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4198.0	NM_028769	74126.0	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	6.5	0.0	1.5	0.0	0.5	1.0
Merged-chr1-170820359-3	chr1	170819815	170820815	+	707.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 7 of 15)	RLTR26B_MM|LTR|ERVK	47456.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-54206201-2	chr5	54205701	54206701	+	707.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143791.0	NR_038045	330086.0	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13	predicted gene 10440	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27622302-2	chr17	27621789	27622789	+	707.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_019837, intron 1 of 4)	intron (NM_019837, intron 1 of 4)	675.0	NM_001291046	56409.0	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15816888-2	chr17	15816388	15817388	+	707.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_178615, intron 2 of 2)	intron (NM_178615, intron 2 of 2)	9698.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127637590-2	chr10	127637012	127638012	+	707.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5474.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	0.0	0.0	0.0	1.5	3.0	1.5
Merged-chr15-62133108-2	chr15	62132608	62133608	+	707.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 2 of 6)	intron (NR_132746, intron 2 of 6)	86343.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-139035408-3	chr1	139034906	139035906	+	707.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166501, intron 3 of 21)	MTD|LTR|ERVL-MaLR	57749.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11099726-2	chr8	11099226	11100226	+	707.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91296.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-91682961-3	chr13	91682466	91683466	+	707.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 9 of 15)	intron (NM_001360776, intron 9 of 15)	-58555.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	8.0	1.5	1.0	16.5	4.0	0.5
Merged-chr19-55766137-3	chr19	55765637	55766637	+	707.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	24327.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145824024-4	chr6	145823536	145824536	+	707.700012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15653.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99257895-2	chr5	99257366	99258366	+	707.700012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4939.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	2.0	6.0	16.0	5.0	28.5	28.0
Merged-chr15-66297630-3	chr15	66297125	66298125	+	707.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11401.0	NM_152923	110862.0	Mm.255585	NM_152923	ENSMUSG00000056258	Kcnq3	-	potassium voltage-gated channel, subfamily Q, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100356981-2	chr11	100356481	100357481	+	707.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177981)	promoter-TSS (NM_177981)	-840.0	NM_010404	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31053505-2	chr2	31053005	31054005	+	707.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019406, exon 9 of 9)	3' UTR (NM_019406, exon 9 of 9)	42995.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-52854193-2	chr1	52853693	52854693	+	707.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146108, intron 2 of 13)	B3|SINE|B2	9155.0	NM_146108	227095.0	Mm.222063	NM_146108	ENSMUSG00000041426	Hibch	2610509I15Rik|HIBYL-COA-H	3-hydroxyisobutyryl-Coenzyme A hydrolase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90033442-2	chr7	90032942	90033942	+	707.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 1 of 5)	intron (NR_110365, intron 1 of 5)	4283.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	87.0	146.0	149.0	62.5	155.5	112.5
Merged-chr8-67950940-4	chr8	67950456	67951456	+	707.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177698, intron 3 of 14)	intron (NM_177698, intron 3 of 14)	23618.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-48873748-6	chr13	48873224	48874224	+	707.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2839.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84276537-3	chr12	84276050	84277050	+	707.599976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-8746.0	NM_029880	77219.0	Mm.246127	NM_029880	ENSMUSG00000072946	Ptgr2	1810016I24Rik|9130222H03Rik|9630002F03Rik|AI838763|B830026H24Rik|PGR-2|PRG-2|Zadh1	prostaglandin reductase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135674499-4	chr5	135673999	135674999	+	707.575012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14646.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	0.0	1.5	3.0	0.0	1.5	3.0
Merged-chr16-44050469-3	chr16	44050033	44051033	+	707.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8525.0	NM_001359085	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-14237507-3	chr16	14237007	14238007	+	707.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013607, intron 9 of 41)	MER20|DNA|hAT-Charlie	53901.0	NM_001161775	17880.0	Mm.250705	NM_013607	ENSMUSG00000018830	Myh11	AV071570|SM1|SM2|smMHC	myosin, heavy polypeptide 11, smooth muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137964401-3	chr4	137963862	137964862	+	707.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_199307, exon 20 of 20)	3' UTR (NM_199307, exon 20 of 20)	-29094.0	NM_001256198	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	0.0	6.0	1.0	0.0	0.0	3.0
Merged-chr5-114014862-2	chr5	114014362	114015362	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286397, intron 4 of 9)	MIRc|SINE|MIR	10054.0	NM_001286396	13142.0	Mm.20115	NM_010018	ENSMUSG00000042096	Dao	AI987963|DAAO|DAMOX|Dao-1|Dao1	D-amino acid oxidase	protein-coding	4.0	0.0	1.0	2.5	1.0	0.0
Merged-chr3-105919758-2	chr3	105919258	105920258	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 4 of 6)	MLT1O|LTR|ERVL-MaLR	12906.0	NM_001033780	433638.0	Mm.239081	NM_001033780	ENSMUSG00000074342	I830077J02Rik	-	RIKEN cDNA I830077J02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65970837-2	chr5	65970337	65971337	+	707.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081104, exon 4 of 5)	exon (NM_001081104, exon 4 of 5)	3713.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106156916-2	chr8	106156415	106157415	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357319, intron 2 of 5)	intron (NM_001357319, intron 2 of 5)	6561.0	NM_001357319	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125381396-2	chr5	125380896	125381896	+	707.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8621.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.5	0.0	0.0	0.0	2.0	4.5
Merged-chr2-166071944-2	chr2	166071444	166072444	+	707.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008679, exon 23 of 23)	3' UTR (NM_008679, exon 23 of 23)	79307.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	1.0	0.0	0.0	0.0	0.0	3.0
Merged-chr9-44402519-2	chr9	44402019	44403019	+	707.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008063, exon 8 of 8)	3' UTR (NM_008063, exon 8 of 8)	2096.0	NR_106053	102465658.0		NR_106053	ENSMUSG00000099309	Mir7085	Gm27423|mmu-mir-7085	microRNA 7085	ncRNA	6.0	8.0	0.0	0.0	0.0	0.0
Merged-chr4-123568493-2	chr4	123567993	123568993	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-47927.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-149118771-2	chr3	149118283	149119283	+	707.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-155954.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	1.5	0.0	0.0	0.5	1.0	0.5
Merged-chr8-26714910-2	chr8	26714410	26715410	+	707.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109513.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	5.0	2.0	0.0	5.0	1.5	0.0
Merged-chr19-45362924-2	chr19	45362424	45363424	+	707.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009771)	promoter-TSS (NM_009771)	-810.0	NM_001360122	12234.0	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	0.0	0.0	0.0	0.0	2.5	0.0
Merged-chr17-27085842-2	chr17	27085342	27086342	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080553, intron 4 of 57)	B3|SINE|B2	-5403.0	NR_106142	102465779.0		NR_106142	ENSMUSG00000098826	Mir7677	Gm27400|mmu-mir-7677	microRNA 7677	ncRNA	1.5	0.0	0.0	3.5	3.0	3.0
Merged-chr17-88057285-2	chr17	88056785	88057785	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081034, intron 1 of 22)	intron (NM_001081034, intron 1 of 22)	7647.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	0.5	2.0	0.5	0.5	1.0	3.5
Merged-chr11-117961479-2	chr11	117960979	117961979	+	707.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7887.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8994451-2	chr3	8993951	8994951	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	9753.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	15.5	35.0	20.5	13.5	11.0	17.0
Merged-chr9-107287522-2	chr9	107287034	107288034	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316691, intron 1 of 7)	intron (NM_001316691, intron 1 of 7)	1862.0	NM_001316691	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	12.0	14.5	12.0	6.5	5.0	9.5
Merged-chr16-93767682-3	chr16	93767171	93768171	+	707.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357118, intron 17 of 35)	intron (NM_001357118, intron 17 of 35)	27230.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-31312387-2	chr10	31311887	31312887	+	707.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1018.0	NM_027168	69692.0	Mm.245537	NM_027168	ENSMUSG00000000295	Hddc2	2310057G13Rik	HD domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-106972299-2	chr14	106971799	106972799	+	707.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-485779.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-28700718-2	chr12	28700196	28701196	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161410, intron 8 of 11)	intron (NM_001161410, intron 8 of 11)	21371.0	NR_105902	102465980.0		NR_105902	ENSMUSG00000098579	Mir6937	Gm27448|mmu-mir-6937	microRNA 6937	ncRNA	2.0	5.5	3.0	0.0	3.5	0.5
Merged-chr10-22355172-1	chr10	22354672	22355672	+	707.5	f1_balb.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-6722.0	NM_020030	56554.0	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86685091-2	chr11	86684591	86685591	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001098810, intron 1 of 1)	intron (NM_001098810, intron 1 of 1)	1010.0	NM_001098810	217057.0	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-22932817-2	chr2	22932317	22933317	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019501, intron 9 of 10)	ID_B1|SINE|B4	37295.0	NM_001355467	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72147090-2	chr6	72146590	72147590	+	707.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011375, exon 5 of 7)	exon (NM_011375, exon 5 of 7)	-23893.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-39621767-2	chr8	39621267	39622267	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113326, intron 4 of 9)	intron (NM_001113326, intron 4 of 9)	20911.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	46.0	60.0	37.5	26.5	40.0	72.0
Merged-chr4-108697219-2	chr4	108696719	108697719	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183300, intron 1 of 15)	intron (NM_183300, intron 1 of 15)	26693.0	NM_183300	230597.0	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	2.5	0.0	2.0	0.0	2.0	1.0
Merged-chr18-38628952-2	chr18	38628452	38629452	+	707.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27684.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42607298-2	chr19	42606802	42607802	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164311, intron 3 of 14)	intron (NM_001164311, intron 3 of 14)	5504.0	NM_001164311	67573.0	Mm.178767	NM_053083	ENSMUSG00000025185	Loxl4	4833426I20Rik|Loxc	lysyl oxidase-like 4	protein-coding	2.0	0.0	3.5	0.0	0.0	0.0
Merged-chr2-52458763-2	chr2	52458263	52459263	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 9 of 13)	MTB|LTR|ERVL-MaLR	-33889.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141214019-2	chr7	141213519	141214519	+	707.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028050)	promoter-TSS (NM_028050)	61.0	NM_001347565	72000.0	Mm.334314	NM_028050	ENSMUSG00000025500	Lmntd2	1600016N20Rik	lamin tail domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100891417-2	chr11	100890917	100891917	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_213660, intron 21 of 23)	intron (NM_213660, intron 21 of 23)	30933.0	NM_001164062	20850.0	Mm.277403	NM_011488	ENSMUSG00000004043	Stat5a	AA959963|STAT5	signal transducer and activator of transcription 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161920532-2	chr1	161920032	161921032	+	707.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43850.0	NM_001357402	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	11.0	0.5	0.0	13.0	3.0	0.0
Merged-chr12-3890478-2	chr12	3889978	3890978	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 6 of 22)	intron (NM_007872, intron 6 of 22)	-1266.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95507494-2	chr10	95506994	95507994	+	707.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-5545.0	NM_001359477	67270.0	Mm.30008	NM_026065	ENSMUSG00000062981	Mrpl42	2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|L42mt|MRP-L31|MRP-L42|MRP-S32|PTD007|Rpml31|S32mt	mitochondrial ribosomal protein L42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114721493-2	chr11	114720993	114721993	+	707.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_053273)	TTS (NM_053273)	-5919.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124011275-2	chr5	124010775	124011775	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	14423.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	52.0	78.5	52.5	57.0	148.0	135.5
Merged-chr7-27171974-2	chr7	27171474	27172474	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029391, intron 7 of 7)	intron (NM_029391, intron 7 of 7)	4119.0	NR_037283	100526505.0		NR_037283	ENSMUSG00000093348	Mir3101	mir-3101|mmu-mir-3101	microRNA 3101	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35504958-2	chr2	35504458	35505458	+	707.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43509.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101874119-2	chr5	101873619	101874619	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 45 of 66)	intron (NM_172882, intron 45 of 66)	108989.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-97272390-2	chr16	97271890	97272890	+	707.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84338.0	NM_019517	56175.0	Mm.97885	NM_019517	ENSMUSG00000040605	Bace2	1110059C24Rik|AEPLC|AI850424|ALP56|ARP1|ASP1|ASP21|BAE2|CDA13|CEAP1|DRAP	beta-site APP-cleaving enzyme 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167647714-2	chr2	167647214	167648214	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145538, intron 2 of 5)	MIR|SINE|MIR	13830.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168225431-2	chr2	168224931	168225931	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132310, intron 2 of 11)	intron (NR_132310, intron 2 of 11)	4948.0	NM_010072	13480.0	Mm.422657	NM_010072	ENSMUSG00000078919	Dpm1	AI118379|AI194292	dolichol-phosphate (beta-D) mannosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-117250373-2	chr1	117249879	117250879	+	707.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	1060349.0	NR_153836	22099.0	Mm.426637	NM_011650	ENSMUSG00000026374	Tsn	2610034C24Rik|AU040286|C3PO|TB-RBP	translin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr6-67181164-2	chr6	67180664	67181664	+	707.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-85815.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-17786925-2	chr3	17786442	17787442	+	707.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2979.0	NR_033490	70441.0	Mm.458192	NR_033490	ENSMUSG00000100252	Mir124-2hg	100040120|2610100L16Rik|6430547I21Rik|A930005K07Rik|AW125202|Gm2612	Mir124-2 host gene (non-protein coding)	ncRNA	1.0	0.0	0.0	6.5	0.0	2.0
Merged-chr11-94329679-4	chr11	94329166	94330166	+	707.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027799, intron 1 of 4)	intron (NM_027799, intron 1 of 4)	1665.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	1.5	20.5	10.0	0.5	4.5	9.0
Merged-chr2-77274699-2	chr2	77274199	77275199	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175465, intron 1 of 17)	intron (NM_175465, intron 1 of 17)	5893.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70817445-2	chr14	70816942	70817942	+	707.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-35491.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	17.0	14.5	10.5	1.5	10.0	8.0
Merged-chr12-80150268-2	chr12	80149768	80150768	+	707.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17424.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-63862356-2	chr7	63861856	63862856	+	707.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-54501.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-45110788-3	chr16	45110348	45111348	+	707.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026439, intron 3 of 7)	RMER5|LTR|ERV1	16837.0	NM_026439	67896.0	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	14.0	2.0	1.5	9.0	8.0	10.0
Merged-chr6-123149479-2	chr6	123148979	123149979	+	707.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23544.0	NM_001004159	381809.0	Mm.333372	NM_001004159	ENSMUSG00000067767	Clec4b2	Aplra1|F830043G12Rik|mDCAR1	C-type lectin domain family 4, member b2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36598524-2	chr1	36598010	36599010	+	707.5	f0_balb.idr|f0_c57.idr	intron (NM_001126046, intron 10 of 14)	intron (NM_001126046, intron 10 of 14)	-5178.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123341689-2	chr4	123341189	123342189	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007558, intron 1 of 6)	B3|SINE|B2	1563.0	NM_001256019	12163.0	Mm.439749	NM_007558	ENSMUSG00000032726	Bmp8a	Bmp7r1|OP-2|OP2	bone morphogenetic protein 8a	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr13-54216745-2	chr13	54216245	54217245	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153432, intron 2 of 3)	B3|SINE|B2	24612.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	0.0	0.0	4.0	0.0	0.0	0.0
Merged-chr11-79098846-2	chr11	79098346	79099346	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	-39010.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127971180-2	chr7	127970680	127971680	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347649, intron 3 of 14)	intron (NM_001347649, intron 3 of 14)	3701.0	NM_139149	233908.0	Mm.277680	NM_139149	ENSMUSG00000030795	Fus	D430004D17Rik|D930039C12Rik|Fus1|Tls	fused in sarcoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181070469-2	chr2	181069969	181070969	+	707.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31292.0	NM_015730	11438.0	Mm.252369	NM_015730	ENSMUSG00000027577	Chrna4	Acra-4|Acra4|EBN1|ENFL1	cholinergic receptor, nicotinic, alpha polypeptide 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-72532803-3	chr14	72532277	72533277	+	707.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	177226.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-14619610-2	chr14	14619096	14620096	+	707.375	f0_balb.idr|f1_balb.idr	Intergenic	RLTR45|LTR|ERVK	-83429.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	1.5	0.0	0.0	0.0	5.5	3.5
Merged-chr14-120318459-2	chr14	120317959	120318959	+	707.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 1 of 8)	intron (NM_001360376, intron 1 of 8)	12007.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	1.0	0.0	1.0	0.0	2.0	1.0
Merged-chr5-64794535-2	chr5	64794035	64795035	+	707.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-8988.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	7.5	17.5	9.5	2.5	5.0	4.5
Merged-chr8-106403440-2	chr8	106402940	106403940	+	707.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11899.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125362286-2	chr6	125361786	125362786	+	707.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_198604)	TTS (NM_198604)	12563.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	0.0	0.0	1.5	6.5	2.0	3.0
Merged-chr1-106425366-2	chr1	106424936	106425936	+	707.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121195.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	5.0	0.0	1.0	0.5	0.0	4.5
Merged-chr9-50528043-1	chr9	50527543	50528543	+	707.333313	f0_balb.idr	intron (NM_011220, intron 1 of 5)	intron (NM_011220, intron 1 of 5)	598.0	NM_011220	19286.0	Mm.35856	NM_011220	ENSMUSG00000032067	Pts	PTPS	6-pyruvoyl-tetrahydropterin synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173398780-3	chr1	173398284	173399284	+	707.333313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21820.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	3.0	0.5	4.0	21.0	0.0	2.0
Merged-chr7-126676398-3	chr7	126675896	126676896	+	707.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133670)	promoter-TSS (NM_133670)	22.0	NM_133670	20887.0	Mm.368982	NM_133670	ENSMUSG00000030711	Sult1a1	AI266890|PST|ST1A1|ST1A4|Stp|Stp1|mSTp1	sulfotransferase family 1A, phenol-preferring, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66807375-4	chr15	66806876	66807876	+	707.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029841, intron 1 of 7)	Tigger16a|DNA|TcMar-Tigger	24453.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-30605493-3	chr12	30605045	30606045	+	707.305542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21102.0	NM_172049	211986.0	Mm.34035	NM_172049	ENSMUSG00000043061	Tmem18	BC024093	transmembrane protein 18	protein-coding	0.0	0.0	0.0	8.0	3.0	5.0
Merged-chr5-142424773-3	chr5	142424326	142425326	+	707.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 1 of 8)	intron (NM_199068, intron 1 of 8)	23329.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89902298-2	chr3	89901798	89902798	+	707.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	10898.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	0.0	0.0	1.5	0.0	0.0	0.5
Merged-chr16-24592593-2	chr16	24592093	24593093	+	707.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 4 of 12)	intron (NM_178665, intron 4 of 12)	63279.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120589998-2	chr4	120589487	120590487	+	707.25	f0_c57.idr|f1_c57bl6.idr	intron (NM_001101603, intron 1 of 2)	intron (NM_001101603, intron 1 of 2)	1242.0	NM_001101603	667063.0	Mm.90231	NM_001101603	ENSMUSG00000091297	Gm8439	EG667063|Gm1664	predicted gene 8439	protein-coding	0.5	3.5	7.5	0.0	0.0	4.0
Merged-chr5-64282318-2	chr5	64281832	64282832	+	707.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 10 of 18)	intron (NM_001289514, intron 10 of 18)	51975.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20835092-2	chr14	20834592	20835592	+	707.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1570.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	8.0	40.0	24.0	11.0	33.0	28.0
Merged-chr7-5057403-2	chr7	5056906	5057906	+	707.25	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_146178, exon 1 of 5)	5' UTR (NM_146178, exon 1 of 5)	680.0	NM_146178	232821.0	Mm.482157	NM_146178	ENSMUSG00000035228	Ccdc106	BC018462	coiled-coil domain containing 106	protein-coding	0.0	0.0	1.5	0.0	0.0	0.5
Merged-chr3-89438855-3	chr3	89438340	89439340	+	707.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146131, intron 1 of 10)	intron (NM_146131, intron 1 of 10)	2136.0	NM_146131	229534.0	Mm.65906	NM_146131	ENSMUSG00000042613	Pbxip1	4732463H20Rik	pre B cell leukemia transcription factor interacting protein 1	protein-coding	1.5	1.5	0.0	0.0	0.0	2.0
Merged-chr7-100425924-2	chr7	100425424	100426424	+	707.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 18 of 32)	intron (NM_001017985, intron 18 of 32)	-47067.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	4.0	0.0	7.5	1.5	0.0	1.0
Merged-chr17-65610171-2	chr17	65609671	65610671	+	707.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355402, intron 1 of 6)	B3|SINE|B2	3384.0	NM_001355402	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	0.5	13.0	5.0	2.5	1.0	1.5
Merged-chr11-85164223-2	chr11	85163723	85164723	+	707.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD3|LINE|L1	-6873.0	NM_028589	73634.0	Mm.48850	NM_028589	ENSMUSG00000018479	1700125H20Rik	-	RIKEN cDNA 1700125H20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75746915-2	chr15	75746415	75747415	+	707.166687	f1_balb.idr|f1_c57bl6.idr	TTS (NM_194350)	TTS (NM_194350)	1007.0	NM_194350	378435.0	Mm.309589	NM_194350	ENSMUSG00000047591	Mafa	RIPE3b1	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30471219-2	chr2	30470719	30471719	+	707.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2980.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	0.0	0.5	1.5	1.5	0.5	1.5
Merged-chr7-19634085-2	chr7	19633585	19634585	+	707.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_019649, exon 13 of 14)	exon (NM_019649, exon 13 of 14)	-4647.0	NM_009046	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40740833-2	chr19	40740333	40741333	+	707.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009848, exon 10 of 10)	3' UTR (NM_009848, exon 10 of 10)	81063.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84222224-2	chr12	84221724	84222724	+	707.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-3343.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23740916-2	chr13	23740463	23741463	+	707.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CACCC)n|Simple_repeat|Simple_repeat	2156.0	NM_015786	50708.0	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	40.5	105.5	37.0	22.0	144.5	46.0
Merged-chr6-31128061-4	chr6	31127477	31128477	+	707.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-64884.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73554088-4	chr2	73553615	73554615	+	707.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-24628.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-9990352-3	chr2	9989844	9990844	+	707.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027748, intron 2 of 6)	intron (NM_027748, intron 2 of 6)	58265.0	NM_027748	209361.0	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79679204-2	chr8	79678694	79679694	+	707.083374	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	32546.0	NM_015751	24015.0	Mm.5831	NM_015751	ENSMUSG00000058355	Abce1	C79080|Oabp|RLI|RNS41|RNS4I|Rnaseli	ATP-binding cassette, sub-family E (OABP), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-9426901-1	chr14	9426401	9427401	+	707.0	f0_balb.idr	Intergenic	Intergenic	-457194.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	4.0	0.0	3.5	0.0	6.5	12.0
Merged-chr2-164706780-2	chr2	164706280	164707280	+	707.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	8279.0	NM_030058	78239.0	Mm.160060	NM_030058	ENSMUSG00000017310	Spint4	9230105I15Rik	serine protease inhibitor, Kunitz type 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-71002408-2	chr12	71001908	71002908	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045055, intron 3 of 3)	intron (NR_045055, intron 3 of 3)	13415.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	14.0	30.0	20.5	17.0	23.0	18.0
Merged-chr11-60936839-2	chr11	60936339	60937339	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008928, intron 1 of 11)	intron (NM_008928, intron 1 of 11)	4782.0	NM_008928	26397.0	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93101149-2	chr1	93100649	93101649	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001294149, intron 1 of 47)	intron (NM_001294149, intron 1 of 47)	725.0	NM_001294149	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-54562952-2	chr8	54562452	54563452	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029569, intron 1 of 6)	intron (NM_029569, intron 1 of 6)	12621.0	NM_029569	76294.0	Mm.33171	NM_029569	ENSMUSG00000031519	Asb5	1110018D09Rik	ankyrin repeat and SOCs box-containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4202435-2	chr19	4201935	4202935	+	707.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011237)	promoter-TSS (NM_011237)	-832.0	NM_011237	19367.0	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3492805-2	chr5	3492305	3493305	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-51028.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-108318214-2	chr4	108317714	108318714	+	707.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9938.0	NM_027250	69893.0	Mm.28354	NM_027250	ENSMUSG00000048351	Coa7	2010305A19Rik|AI451324|D4Ertd796e|Selrc1	cytochrome c oxidase assembly factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172526053-2	chr1	172525553	172526553	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027972, intron 1 of 11)	L3b|LINE|CR1	4923.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	1.0	27.0	14.5	1.0	1.0	0.0
Merged-chr11-98850422-2	chr11	98849922	98850922	+	707.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001080925, exon 13 of 15)	exon (NM_001080925, exon 13 of 15)	-13176.0	NM_197940	68524.0	Mm.28661	NM_197940	ENSMUSG00000038013	Wipf2	1110014J05Rik|5730509C05Rik|AA407487|Gm1176|Wich|Wire	WAS/WASL interacting protein family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133368516-2	chr4	133368016	133369016	+	707.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID|SINE|ID	-1219.0	NM_016981	20544.0	Mm.4312	NM_016981	ENSMUSG00000028854	Slc9a1	AW554487|Apnh|Mir5122|Nhe1|mir-5122|swe	solute carrier family 9 (sodium/hydrogen exchanger), member 1	protein-coding	0.0	0.0	2.0	0.0	0.0	0.5
Merged-chr6-125312139-2	chr6	125311639	125312639	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010736, intron 5 of 9)	intron (NM_010736, intron 5 of 9)	1746.0	NM_010736	17000.0	Mm.3122	NM_010736	ENSMUSG00000030339	Ltbr	AI256028|LTbetaR|Ltar|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFRrp|Tnfbr|Tnfrsf3	lymphotoxin B receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80965987-2	chr7	80965487	80966487	+	707.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-18437.0	NM_019951	56529.0	Mm.43760	NM_019951	ENSMUSG00000025724	Sec11a	1810012E07Rik|18kDa|Sec11l1|Sid2895p|Spc18|sid2895	SEC11 homolog A, signal peptidase complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97314840-2	chr7	97314340	97315340	+	707.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001177412, exon 6 of 10)	exon (NM_001177412, exon 6 of 10)	11124.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-33642464-2	chr8	33641964	33642964	+	707.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178648)	promoter-TSS (NM_178648)	-488.0	NM_178648	108159.0	Mm.29301	NM_178648	ENSMUSG00000052906	Ubxn8	D0H8S2298E|Rep-8|Rep8h|Ubxd6	UBX domain protein 8	protein-coding	59.5	67.0	76.0	25.0	75.5	57.0
Merged-chr11-94752760-1	chr11	94752260	94753260	+	707.0	f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	8422.0	NM_001105561	217122.0	Mm.24063	NM_183153		Gm11545	A430060F13Rik|C86086	predicted gene 11545	protein-coding	7.0	10.5	14.5	18.0	10.5	25.0
Merged-chr12-10409399-2	chr12	10408899	10409899	+	707.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18619.0	NM_023697	105014.0	Mm.119343	NM_023697	ENSMUSG00000020621	Rdh14	3110030G19Rik|AW215439|PAN2	retinol dehydrogenase 14 (all-trans and 9-cis)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79355758-2	chr15	79355258	79356258	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304832, intron 1 of 2)	ID_B1|SINE|B4	7356.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39487040-3	chr18	39486504	39487504	+	707.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008173, exon 1 of 8)	exon (NM_008173, exon 1 of 8)	241.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	2.0	19.0	2.5	0.0	6.0	2.5
Merged-chr8-22780873-2	chr8	22780373	22781373	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008872, intron 13 of 13)	intron (NM_008872, intron 13 of 13)	23151.0	NM_008872	18791.0	Mm.154660	NM_008872	ENSMUSG00000031538	Plat	AU020998|AW212668|D8Ertd2e|tPA	plasminogen activator, tissue	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114916405-2	chr11	114915905	114916905	+	707.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17981.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98970866-2	chr7	98970366	98971366	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 12 of 14)	intron (NM_178635, intron 12 of 14)	132021.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67958645-1	chr5	67958145	67959145	+	707.0	f0_balb.idr	intron (NM_001256184, intron 2 of 3)	(CAAAA)n|Simple_repeat|Simple_repeat	-15564.0	NR_038182	73865.0	Mm.66946	NR_038182	ENSMUSG00000106880	4930425K10Rik	-	RIKEN cDNA 4930425K10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-24538726-2	chr8	24538226	24539226	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145949, intron 8 of 9)	intron (NM_145949, intron 8 of 9)	37607.0	NM_145949	209176.0	Mm.219580	NM_145949	ENSMUSG00000031549	Ido2	AI265623|C230043N17Rik|Ido-2|Indol1	indoleamine 2,3-dioxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120829418-2	chr7	120828918	120829918	+	707.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-13413.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131960564-2	chr1	131960064	131961064	+	707.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2351.0	NM_001177628	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125533935-2	chr8	125533435	125534435	+	707.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	35928.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	2.5	7.0	12.0	0.0	4.0	6.5
Merged-chr5-120506671-2	chr5	120506171	120507171	+	707.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3048.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114625797-2	chr5	114625297	114626297	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022017, intron 13 of 15)	intron (NM_022017, intron 13 of 15)	32624.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33782690-1	chr17	33782190	33783190	+	707.0	f1_balb.idr	Intergenic	B1_Mur1|SINE|Alu	-1115.0	NM_020581	57875.0	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	3.0	7.0	1.0	5.5	7.5	3.5
Merged-chr7-67494764-4	chr7	67494192	67495192	+	707.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121834.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	2.5	1.5	11.0	3.0	12.0	0.0
Merged-chr8-116587237-2	chr8	116586737	116587737	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 4 of 6)	MLT1C|LTR|ERVL-MaLR	82222.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117835713-2	chr11	117835213	117836213	+	707.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027827, exon 9 of 11)	exon (NM_027827, exon 9 of 11)	-9699.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5605130-2	chr17	5604630	5605630	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	112530.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43118965-1	chr13	43118465	43119465	+	707.0	f0_balb.idr	intron (NM_001005740, intron 8 of 12)	intron (NM_001005740, intron 8 of 12)	-3874.0	NM_001005748	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	2.0	0.0	5.0	1.0	10.5	6.5
Merged-chr9-118697077-2	chr9	118696577	118697577	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 14 of 27)	intron (NM_133721, intron 14 of 27)	-14615.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137354515-1	chr4	137354015	137355015	+	707.0	f1_c57bl6.idr	intron (NM_009861, intron 1 of 5)	intron (NM_009861, intron 1 of 5)	3244.0	NM_009861	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	4.0	42.5	23.0	10.0	37.0	27.0
Merged-chr3-27269432-2	chr3	27268932	27269932	+	707.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47645.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170246785-2	chr2	170246285	170247285	+	707.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104110.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46773575-2	chr17	46773075	46774075	+	707.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025966)	TTS (NM_025966)	940.0	NM_025966	67101.0	Mm.358702	NM_025966	ENSMUSG00000062619	2310039H08Rik	-	RIKEN cDNA 2310039H08 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134244913-1	chr4	134244413	134245413	+	707.0	f1_c57bl6.idr	non-coding (NR_040435, exon 4 of 5)	non-coding (NR_040435, exon 4 of 5)	678.0	NM_024215	68040.0	Mm.300404	NM_024215	ENSMUSG00000028840	Zfp593	3110024A21Rik|AV062409|E130106C14Rik|ZNF593	zinc finger protein 593	protein-coding	14.0	40.5	17.5	2.0	10.0	18.0
Merged-chr16-52038434-2	chr16	52037934	52038934	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 2 of 17)	intron (NM_001033238, intron 2 of 17)	6885.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73726649-2	chr15	73726149	73727149	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	1719.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97098819-2	chr15	97098319	97099319	+	707.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42863.0	NM_027052	69354.0	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146644064-1	chr6	146643564	146644564	+	707.0	f1_balb.idr	intron (NM_025315, intron 1 of 3)	intron (NM_025315, intron 1 of 3)	1485.0	NM_025315	108098.0	Mm.26212	NM_025315	ENSMUSG00000030291	Med21	0610007L03Rik|AI449604|D19234|D6Ertd782e|Srb7|Surb7	mediator complex subunit 21	protein-coding	0.0	2.5	4.5	2.0	0.0	0.0
Merged-chr6-92822805-2	chr6	92822305	92823305	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175314, intron 19 of 29)	ORR1D2|LTR|ERVL-MaLR	78636.0	NM_175314	101401.0	Mm.158235	NM_175314	ENSMUSG00000030022	Adamts9	1810011L16Rik|8430403M15Rik|AW743315|E030027K14Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154961052-2	chr4	154960552	154961552	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010419, intron 1 of 2)	CpG	129.0	NM_010419	15208.0	Mm.137268	NM_010419	ENSMUSG00000048001	Hes5	bHLHb38	hes family bHLH transcription factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-80950931-2	chr8	80950382	80951382	+	707.0	f0_balb.idr|f1_balb.idr	Intergenic	ID_B1|SINE|B4	64024.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	39.5	68.0	55.5	40.5	112.0	97.5
Merged-chr4-150622937-2	chr4	150622437	150623437	+	707.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001085492)	TTS (NM_001085492)	29237.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	1.0	2.0	2.5	7.0	2.5	6.0
Merged-chr17-40897115-1	chr17	40896615	40897615	+	707.0	f1_balb.idr	Intergenic	Intergenic	-16557.0	NM_027834	71583.0	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding	5.5	0.0	8.5	0.0	9.0	5.5
Merged-chr4-133247798-1	chr4	133247298	133248298	+	707.0	f1_c57bl6.idr	intron (NM_016693, intron 15 of 28)	(TG)n|Simple_repeat|Simple_repeat	6980.0	NM_016693	53608.0	Mm.36640	NM_016693	ENSMUSG00000028862	Map3k6	Ask2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding	0.0	15.0	0.0	0.0	2.0	5.0
Merged-chr10-25450516-2	chr10	25450016	25451016	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 3 of 16)	intron (NM_001358754, intron 3 of 16)	42148.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119123075-1	chr8	119122575	119123575	+	707.0	f0_balb.idr	intron (NM_019707, intron 7 of 13)	GA-rich|Low_complexity|Low_complexity	-221463.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr8-56324375-1	chr8	56323875	56324875	+	707.0	f0_balb.idr	Intergenic	Intergenic	29823.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	6.0	11.5	15.5	9.0	1.0	7.0
Merged-chr8-69917284-2	chr8	69916784	69917784	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 6 of 12)	intron (NM_001286450, intron 6 of 12)	-14726.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-45881235-2	chr11	45880735	45881735	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045520, intron 1 of 11)	intron (NM_001045520, intron 1 of 11)	29271.0	NM_001045520	216705.0	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38363277-4	chr16	38362767	38363767	+	706.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022318, intron 1 of 3)	Charlie24|DNA|hAT-Charlie	1077.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32546070-2	chr17	32545570	32546570	+	706.924988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356302, intron 6 of 11)	L1_Mus3|LINE|L1	9513.0	NM_001356303	70101.0	Mm.30504	NM_024442	ENSMUSG00000048440	Cyp4f16	2310021J05Rik|AI746515	cytochrome P450, family 4, subfamily f, polypeptide 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133744825-3	chr4	133744377	133745377	+	706.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080819, intron 1 of 19)	PB1D9|SINE|Alu	8734.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	44.0	37.5	44.0	103.5	178.5	136.5
Merged-chr1-43375142-2	chr1	43374642	43375642	+	706.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEf|LINE|L1	-70609.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85467683-2	chr12	85467183	85468183	+	706.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6207.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47502712-2	chr19	47502212	47503212	+	706.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175360, intron 9 of 9)	intron (NM_175360, intron 9 of 9)	-10270.0	NR_045322	100503104.0	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA	0.5	1.0	0.0	7.0	3.5	0.0
Merged-chr4-147398127-2	chr4	147397627	147398627	+	706.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	MLT1B|LTR|ERVL-MaLR	-155150.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128551568-4	chr8	128551084	128552084	+	706.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-134070.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0.5	15.5	0.0	13.5	10.0	13.0
Merged-chr7-29214557-3	chr7	29214064	29215064	+	706.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164658)	promoter-TSS (NM_001164658)	-531.0	NM_001164658	320225.0	Mm.349382	NM_001039721	ENSMUSG00000049676	Catsperg1	A230107C01Rik|Catsperg	cation channel sperm associated auxiliary subunit gamma 1	protein-coding	0.5	8.0	2.5	0.5	8.5	1.5
Merged-chr15-9747616-2	chr15	9747116	9748116	+	706.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305042, intron 1 of 36)	intron (NM_001305042, intron 1 of 36)	1252.0	NM_177123	320277.0	Mm.127822	NM_177123	ENSMUSG00000072663	Spef2	C230086A09Rik	sperm flagellar 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76199619-3	chr16	76199203	76200203	+	706.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77090.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35573537-3	chr18	35573031	35574031	+	706.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010771, intron 2 of 14)	intron (NM_010771, intron 2 of 14)	11373.0	NM_010771	17184.0	Mm.215034	NM_010771	ENSMUSG00000037236	Matr3	1110061A14Rik|2810017I02Rik|AI841759|AW555618|D030046F20Rik|mKIAA0723	matrin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113128900-3	chr12	113128398	113129398	+	706.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346696, intron 10 of 19)	intron (NM_001346696, intron 10 of 19)	-11338.0	NM_024223	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31824202-2	chr2	31823702	31824702	+	706.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_178887, intron 4 of 6)	intron (NM_178887, intron 4 of 6)	-13622.0	NM_183424	227717.0	Mm.185027	NM_183424	ENSMUSG00000043102	Qrfp	P518	pyroglutamylated RFamide peptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93423187-2	chr10	93422687	93423687	+	706.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9920.0	NR_106161	102465791.0		NR_106161	ENSMUSG00000098679	Mir7688	Gm27874|mmu-mir-7688	microRNA 7688	ncRNA	5.5	0.0	0.0	4.0	6.5	1.0
Merged-chr19-5812155-6	chr19	5811628	5812628	+	706.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9456.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111379636-2	chr12	111379136	111380136	+	706.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1918.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-89210552-4	chr9	89210075	89211075	+	706.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026829)	promoter-TSS (NM_026829)	-615.0	NM_026829	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	4.0	13.0	18.0	9.5	16.5	6.0
Merged-chr11-114987513-1	chr11	114987013	114988013	+	706.75	f0_c57.idr	exon (NM_145437, exon 2 of 4)	exon (NM_145437, exon 2 of 4)	2373.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	60.5	114.5	111.5	36.0	135.0	80.5
Merged-chr10-84387552-3	chr10	84387063	84388063	+	706.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 4 of 6)	L2c|LINE|L2	52908.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-9128669-3	chr15	9128188	9129188	+	706.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 2 of 9)	intron (NM_013787, intron 2 of 9)	11766.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106008034-4	chr11	106007527	106008527	+	706.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037712)	promoter-TSS (NM_001037712)	-176.0	NM_001037712	192775.0	Mm.343850	NM_001037712	ENSMUSG00000001901	Kcnh6	m-erg2	potassium voltage-gated channel, subfamily H (eag-related), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-83616417-3	chr9	83615893	83616893	+	706.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68055.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17656060-1	chr10	17655560	17656560	+	706.666687	f0_balb.idr	Intergenic	Intergenic	-67168.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.0	5.5	0.5	1.0	6.0	7.5
Merged-chr4-139087033-2	chr4	139086502	139087502	+	706.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008675, intron 1 of 3)	intron (NM_008675, intron 1 of 3)	5968.0	NM_008675	17965.0	Mm.9404	NM_008675	ENSMUSG00000041120	Nbl1	D4H1S1733E|DAN|Dana|NO3	neuroblastoma, suppression of tumorigenicity 1	protein-coding	2.5	1.5	1.5	1.5	0.0	0.0
Merged-chr8-122864803-2	chr8	122864272	122865272	+	706.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007662, intron 10 of 13)	intron (NM_007662, intron 10 of 13)	16398.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57607231-3	chr16	57606744	57607744	+	706.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025599)	promoter-TSS (NM_025599)	-377.0	NM_025599	66497.0	Mm.425976	NM_025599	ENSMUSG00000022748	Cmss1	1110001A06Rik|2610528E23Rik|4930572F24Rik|AV099812|AV122629	cms small ribosomal subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-53883293-3	chr1	53882777	53883777	+	706.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 17 of 28)	CT-rich|Low_complexity|Low_complexity	33853.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-85285383-3	chr13	85284886	85285886	+	706.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145452, intron 1 of 24)	PB1|SINE|Alu	4100.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	1.0	4.5	4.0	6.0	10.5	4.0
Merged-chr9-45274372-3	chr9	45273879	45274879	+	706.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5230.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-28930770-2	chr6	28930270	28931270	+	706.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-91849.0	NR_029567	387237.0		NR_029567	ENSMUSG00000065469	Mir129-1	Mirn129-1|Mirn129b|miR-129b|mir-129-1	microRNA 129-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18351053-2	chr16	18350553	18351553	+	706.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033474, intron 1 of 18)	intron (NM_033474, intron 1 of 18)	2871.0	NM_001272029	11877.0	Mm.293599	NM_033474	ENSMUSG00000000325	Arvcf	-	armadillo repeat gene deleted in velocardiofacial syndrome	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134098049-2	chr4	134097544	134098544	+	706.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2971.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	113.0	317.5	195.0	56.5	237.0	164.5
Merged-chr17-47590616-2	chr17	47590116	47591116	+	706.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 2 of 6)	(TC)n|Simple_repeat|Simple_repeat	-2851.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-34049974-2	chr4	34049474	34050474	+	706.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290443)	promoter-TSS (NM_001290443)	91.0	NM_001290443	67652.0	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21088534-2	chr11	21088034	21089034	+	706.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20D|LTR|ERVK	-2790.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95569287-2	chr10	95568787	95569787	+	706.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5141.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-75296470-2	chr3	75295970	75296970	+	706.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26392.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75035454-2	chr8	75034954	75035954	+	706.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136259, intron 1 of 15)	intron (NM_001136259, intron 1 of 15)	1768.0	NM_011622	21968.0	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16749330-2	chr7	16748830	16749830	+	706.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_198613)	TTS (NM_198613)	10886.0	NM_198613	232910.0	Mm.333597	NM_198613	ENSMUSG00000008036	Ap2s1	AI043088	adaptor-related protein complex 2, sigma 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164462092-2	chr2	164461592	164462592	+	706.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025575, intron 2 of 3)	intron (NM_025575, intron 2 of 3)	1121.0	NM_025575	66460.0	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	0.0	3.5	0.5	1.5	0.0	1.0
Merged-chr19-8857769-2	chr19	8857269	8858269	+	706.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	7001.0	NM_001013019	68852.0	Mm.265792	NM_001013019	ENSMUSG00000071656	Lrrn4cl	1110067I12Rik	LRRN4 C-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-59511511-2	chr5	59511011	59512011	+	706.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	474491.0	NR_040683	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45123200-2	chr2	45122700	45123700	+	706.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-5758.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-150952900-2	chr5	150952400	150953400	+	706.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013823, exon 1 of 5)	exon (NM_013823, exon 1 of 5)	293.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20872949-2	chr9	20872449	20873449	+	706.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145154)	TTS (NM_145154)	4307.0	NM_175687	319278.0	Mm.249932	NM_175687	ENSMUSG00000038884	A230050P20Rik	RyDEN	RIKEN cDNA A230050P20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-8767136-2	chr16	8766636	8767636	+	706.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-28794.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65165158-2	chr9	65164658	65165658	+	706.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357257, intron 2 of 13)	intron (NM_001357257, intron 2 of 13)	24004.0	NM_001357257	19289.0	Mm.41529	NM_008988	ENSMUSG00000032394	Igdcc3	2810401C09Rik|AI851425|Punc|WI-14920	immunoglobulin superfamily, DCC subclass, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105569141-2	chr5	105568641	105569641	+	706.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	49670.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	1.0	3.0	1.5	1.5	1.5	4.0
Merged-chr6-79417074-2	chr6	79416574	79417574	+	706.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	385032.0	NR_040301	100504701.0	Mm.400420	NR_040301	ENSMUSG00000108072	Gm20362	-	predicted gene, 20362	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38482986-2	chr16	38482486	38483486	+	706.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359898, intron 4 of 5)	B2_Mm2|SINE|B2	24053.0	NM_009855	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	0.0	0.0	0.0	1.5	3.0	0.0
Merged-chr9-92003353-2	chr9	92002853	92003853	+	706.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2A|LINE|L1	-189583.0	NM_001195693	100504689.0	Mm.464262	NM_001195693	ENSMUSG00000095654	Plscr5	331000	phospholipid scramblase family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145744953-2	chr6	145744454	145745454	+	706.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63429.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	3.0	5.0	5.5	1.0	8.5	14.0
Merged-chr5-12669277-2	chr5	12668777	12669777	+	706.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	286111.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117104850-2	chr4	117104353	117105353	+	706.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008958, exon 3 of 22)	exon (NM_008958, exon 3 of 22)	8797.0	NM_008958	19207.0	Mm.287037	NM_008958	ENSMUSG00000028681	Ptch2	ptc2	patched 2	protein-coding	0.0	5.0	0.0	2.5	0.5	1.5
Merged-chr10-128388987-2	chr10	128388487	128389487	+	706.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105880)	TTS (NR_105880)	155.0	NR_105880	102465979.0		NR_105880	ENSMUSG00000106600	Mir6915	mmu-mir-6915	microRNA 6915	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36915399-2	chr16	36914899	36915899	+	706.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_030035, exon 13 of 22)	exon (NM_030035, exon 13 of 22)	-18210.0	NR_040476	68306.0	Mm.399193	NR_040476	ENSMUSG00000084834	4930565N06Rik	4930428L02Rik	RIKEN cDNA 4930565N06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-30596730-2	chr3	30596230	30597230	+	706.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029690)	TTS (NM_029690)	3140.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41449539-2	chr10	41449039	41450039	+	706.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153398)	promoter-TSS (NM_153398)	-819.0	NM_001277229	268294.0	Mm.258475	NM_153398	ENSMUSG00000019826	Zbtb24	BC055367|Bif1|Bsg1|ZNF450	zinc finger and BTB domain containing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67051053-1	chr10	67050553	67051553	+	706.5	f0_balb.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	45935.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4674253-1	chr16	4673753	4674753	+	706.5	f0_balb.idr	intron (NM_030205, intron 3 of 27)	intron (NM_030205, intron 3 of 27)	5467.0	NM_030205	78885.0	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64593546-2	chr17	64593046	64594046	+	706.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR67B|LTR|ERVL	-8103.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123856479-2	chr9	123855979	123856979	+	706.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011798, exon 2 of 2)	exon (NM_011798, exon 2 of 2)	-4580.0	NM_001110253	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25726478-2	chr14	25725978	25726978	+	706.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 2 of 3)	intron (NM_001101433, intron 2 of 3)	-25196.0	NR_028021	68173.0	Mm.444727	NM_026595		Ppifos	4930520F12Rik|Ppifs	peptidylprolyl isomerase F, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41602794-3	chr10	41602273	41603273	+	706.466675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 29 of 47)	intron (NM_001358562, intron 29 of 47)	34757.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128829963-3	chr6	128829484	128830484	+	706.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3669.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	16.5	7.0	5.5	4.0	2.5	2.5
Merged-chr8-94177802-3	chr8	94177283	94178283	+	706.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1306.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-166731049-3	chr1	166730538	166731538	+	706.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49193.0	NM_001347135	240894.0	Mm.246610	NM_172844	ENSMUSG00000026560	Fmo9	4831428F09Rik	flavin containing monooxygenase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-111036362-3	chr5	111035852	111036852	+	706.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	32208.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	0.0	0.5	10.0	6.0	10.5	2.0
Merged-chr7-72240208-3	chr7	72239709	72240709	+	706.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024703, intron 4 of 22)	intron (NM_001024703, intron 4 of 22)	66386.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3720475-3	chr7	3719974	3720974	+	706.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011095)	promoter-TSS (NM_011095)	-92.0	NM_011095	18733.0	Mm.326531	NM_011095	ENSMUSG00000058818	Pirb	Gp91|LIR-3|Lilrb3|PIR-B	paired Ig-like receptor B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-40131220-2	chr15	40130720	40131720	+	706.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3145.0	NM_001256056	328531.0	Mm.60703	NM_001256056	ENSMUSG00000094112	9330182O14Rik	-	RIKEN cDNA 9330182O14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128892101-2	chr10	128891601	128892601	+	706.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010272)	promoter-TSS (NM_010272)	-383.0	NM_010272	14561.0	Mm.299218	NM_010272	ENSMUSG00000025352	Gdf11	BMP-11|Bmp11	growth differentiation factor 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25326141-3	chr12	25325684	25326684	+	706.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	197010.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	7.5	10.0	8.0	1.5	4.5	0.5
Merged-chr6-13681042-3	chr6	13680538	13681538	+	706.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3072.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	1.5	2.0	1.0	0.5	0.0	4.0
Merged-chr3-53522923-3	chr3	53522426	53523426	+	706.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172862, intron 18 of 23)	intron (NM_172862, intron 18 of 23)	34133.0	NM_153156	229277.0	Mm.222810	NM_153156	ENSMUSG00000027744	Stoml3	Epb7.2l|SLP3|sro	stomatin (Epb7.2)-like 3	protein-coding	0.0	2.0	4.5	1.0	1.5	3.5
Merged-chr14-117779214-4	chr14	117778722	117779722	+	706.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011821, intron 4 of 8)	intron (NM_011821, intron 4 of 8)	174625.0	NR_105747	102465148.0		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58401226-2	chr15	58400742	58401742	+	706.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11968.0	NM_027211	69787.0	Mm.237985	NM_027211		Anxa13	1810034H17Rik|AV055219	annexin A13	protein-coding	1.5	12.0	1.0	1.0	8.5	6.5
Merged-chr8-71663672-2	chr8	71663157	71664157	+	706.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 4 of 41)	intron (NM_001029873, intron 4 of 41)	8100.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	0.0	0.0	4.0	0.0	0.0	0.0
Merged-chr10-78591707-2	chr10	78591207	78592207	+	706.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_027875, intron 1 of 7)	intron (NM_027875, intron 1 of 7)	257.0	NM_027875	71709.0	Mm.86439	NM_027875	ENSMUSG00000032714	Syde1	1200008N06Rik|BB043000|mSYD1A	synapse defective 1, Rho GTPase, homolog 1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-141081555-2	chr5	141081055	141082055	+	706.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-80959.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85279140-2	chr12	85278640	85279640	+	706.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_025421, intron 2 of 2)	L1MB3|LINE|L1	1295.0	NM_025421	66204.0	Mm.311985	NM_025421	ENSMUSG00000008822	Acyp1	1110039O14Rik|AI325944	acylphosphatase 1, erythrocyte (common) type	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53084019-2	chr4	53083519	53084519	+	706.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 14 of 49)	intron (NM_013454, intron 14 of 49)	72139.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-37854788-4	chr16	37854287	37855287	+	706.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	5S|rRNA|rRNA	-13613.0	NM_177093	320184.0	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-37342513-3	chr3	37342042	37343042	+	706.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6111.0	NM_008006	14173.0	Mm.473689	NM_008006	ENSMUSG00000037225	Fgf2	Fgf-2|Fgfb|bFGF	fibroblast growth factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67234981-4	chr7	67234480	67235480	+	706.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001291191, exon 11 of 11)	exon (NM_001291191, exon 11 of 11)	12364.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-116949891-4	chr10	116949402	116950402	+	706.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038025)	promoter-TSS (NR_038025)	551.0	NM_001359645	216363.0	Mm.336394	NM_001003950	ENSMUSG00000064181	Rab3ip	B230311A06|Gtpat12|Rabin3	RAB3A interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85823364-3	chr11	85822871	85823871	+	706.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_077059, intron 1 of 4)	intron (NR_077059, intron 1 of 4)	9017.0	NR_077059	69909.0	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24797260-3	chr17	24796779	24797779	+	706.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-7103.0	NM_029197	75178.0	Mm.52592	NM_029197	ENSMUSG00000024155	Meiob	4930528F23Rik|MLZ-675	meiosis specific with OB domains	protein-coding	1.0	4.5	4.0	17.5	16.0	0.5
Merged-chr4-135878608-2	chr4	135878108	135879108	+	706.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-4762.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113680695-2	chr6	113680195	113681195	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 8 of 11)	intron (NM_001113553, intron 8 of 11)	-16355.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32286981-4	chr11	32286444	32287444	+	706.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033981)	promoter-TSS (NM_001033981)	-20.0	NM_001033981	544763.0	Mm.450958	NM_001033981	ENSMUSG00000073063	Hbq1b	F830116E18Rik|Hbqt1	hemoglobin, theta 1B	protein-coding	1.0	1.5	3.0	0.5	0.0	0.0
Merged-chr11-20739378-2	chr11	20738878	20739878	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181411, intron 1 of 8)	intron (NM_181411, intron 1 of 8)	2178.0	NM_001290545	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55015820-1	chr14	55015320	55016320	+	706.0	f1_balb.idr	intron (NM_026890, intron 1 of 10)	intron (NM_026890, intron 1 of 10)	366.0	NM_026890	68966.0	Mm.21214	NM_026890	ENSMUSG00000022204	Ngdn	1500001L15Rik|Ngd|neuroguidin	neuroguidin, EIF4E binding protein	protein-coding	130.0	207.5	158.5	103.0	211.5	136.0
Merged-chr19-7281767-2	chr19	7281267	7282267	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080388, intron 14 of 16)	intron (NM_001080388, intron 14 of 16)	13488.0	NM_001320554	104383.0	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126597171-2	chr8	126596671	126597671	+	706.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3735.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	2.5	8.0	6.5	9.0	4.5	14.5
Merged-chr14-72825742-2	chr14	72825244	72826244	+	706.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115741.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr6-32466894-2	chr6	32466394	32467394	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-44247.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52940158-2	chr2	52939632	52940632	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	82264.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30319475-1	chr7	30318975	30319975	+	706.0	f1_c57bl6.idr	TTS (NM_001290565)	TTS (NM_001290565)	2900.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	11.0	0.0	2.0	3.5	0.0	1.5
Merged-chr11-114701890-2	chr11	114701390	114702390	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 5 of 13)	intron (NM_053273, intron 5 of 13)	-25522.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-110686931-2	chr2	110686431	110687431	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355244, intron 15 of 23)	Lx|LINE|L1	-34563.0	NM_001290786	269328.0	Mm.32566	NM_172979	ENSMUSG00000050808	Muc15	4732460E09|D730046L02Rik|MUC-15	mucin 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27445423-2	chr7	27444923	27445923	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_032610, intron 1 of 35)	B1_Mus2|SINE|Alu	1166.0	NM_032610	80297.0	Mm.459123	NM_032610	ENSMUSG00000011751	Sptbn4	1700022P15Rik|5830426A08Rik|ROSA62|SpbIV|Spnb4|dyn|lnd|nmf261|nmf379|qv	spectrin beta, non-erythrocytic 4	protein-coding	0.0	4.5	0.0	0.0	4.5	0.0
Merged-chr14-54416991-2	chr14	54416491	54417491	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 1 of 11)	B4A|SINE|B4	688.0	NM_001253679	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	0.0	0.0	0.0	0.0	0.5	1.0
Merged-chr17-10196041-2	chr17	10195541	10196541	+	706.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	123320.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-105986396-2	chr11	105985896	105986896	+	706.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104047)	promoter-TSS (NR_104047)	-702.0	NR_104047	100379610.0	Mm.754	NR_104047	ENSMUSG00000085297	Gm11651	-	predicted gene 11651	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-63133753-2	chr11	63133253	63134253	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302255, intron 2 of 4)	intron (NM_001302255, intron 2 of 4)	950.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11009708-2	chr4	11009208	11010208	+	706.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2089.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115517671-2	chr5	115517164	115518164	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	10988.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	113.0	255.0	120.5	80.5	155.5	76.0
Merged-chr4-141659403-3	chr4	141658908	141659908	+	706.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	4707.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	50.5	99.0	82.5	36.0	72.0	58.5
Merged-chr16-76292276-2	chr16	76291776	76292776	+	706.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_173440, exon 4 of 4)	exon (NM_173440, exon 4 of 4)	80773.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5469683-2	chr19	5469183	5470183	+	706.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1176.0	NM_009985	13041.0	Mm.113590	NM_009985	ENSMUSG00000024910	Ctsw	lymphopain	cathepsin W	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172317429-1	chr1	172316929	172317929	+	706.0	f1_balb.idr	exon (NM_080419, exon 3 of 7)	exon (NM_080419, exon 3 of 7)	5062.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	4.5	5.0	10.5	1.0	6.5	3.0
Merged-chr8-61542702-2	chr8	61542202	61543202	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081390, intron 10 of 19)	intron (NM_001081390, intron 10 of 19)	48467.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95046614-1	chr4	95046114	95047114	+	706.0	f0_balb.idr	Intergenic	Intergenic	5608.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17655896-2	chr6	17655396	17656396	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007604, intron 4 of 9)	intron (NM_007604, intron 4 of 9)	18886.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	2.0	13.0	12.5	3.5	13.0	12.5
Merged-chr13-79063782-2	chr13	79063282	79064282	+	706.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-864909.0	NM_010151	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-41390655-2	chr7	41390155	41391155	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199330, intron 1 of 4)	MERV1_LTR|LTR|ERV1	2605.0	NM_183167	233168.0	Mm.379390	NM_183167	ENSMUSG00000056383	AI987944	-	expressed sequence AI987944	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114954275-1	chr11	114953775	114954775	+	706.0	f0_c57.idr	Intergenic	MMERVK9E_I-int|LTR|ERVK	6142.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	13.5	25.0	36.0	2.0	4.0	0.0
Merged-chr3-90065806-2	chr3	90065306	90066306	+	706.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028567, exon 4 of 4)	3' UTR (NM_028567, exon 4 of 4)	3010.0	NM_028567	73545.0	Mm.482512	NM_028567	ENSMUSG00000027942	1700094D03Rik	-	RIKEN cDNA 1700094D03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82342420-3	chr15	82341985	82342985	+	706.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177391, intron 1 of 1)	intron (NM_177391, intron 1 of 1)	1306.0	NM_177391	338368.0	Mm.444916	NM_177391	ENSMUSG00000049687	Fam109b	C920005C14Rik|IPIP27B|Ses2	family with sequence similarity 109, member B	protein-coding	0.0	8.0	3.5	0.5	1.5	3.0
Merged-chr18-60855741-2	chr18	60855241	60856241	+	706.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	-6777.0	NM_001198984	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129395792-2	chr6	129395292	129396292	+	706.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1505.0	NM_001204253	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151339981-2	chr1	151339481	151340481	+	706.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4505.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34035504-1	chr6	34035004	34036004	+	706.0	f0_balb.idr	intron (NM_028886, intron 1 of 19)	intron (NM_028886, intron 1 of 19)	6056.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-72373068-1	chr2	72372568	72373568	+	706.0	f0_c57.idr	intron (NM_023057, intron 7 of 19)	intron (NM_023057, intron 7 of 19)	87367.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4181159-2	chr19	4180659	4181659	+	706.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5680.0	NM_134148	107239.0	Mm.482310	NM_134148	ENSMUSG00000075289	Carns1	AI790298|Atpgd1|mKIAA1394	carnosine synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100944055-1	chr7	100943555	100944555	+	706.0	f0_balb.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	-11894.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	54.5	116.5	110.5	57.5	99.0	91.5
Merged-chr14-21049065-4	chr14	21048569	21049569	+	706.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018829, intron 1 of 8)	B3|SINE|B2	3373.0	NM_018829	55946.0	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	0.0	0.0	3.0	3.5	4.5	1.5
Merged-chr19-29465594-2	chr19	29465094	29466094	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	RMER1A|Other|Other	54675.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70784256-3	chr14	70783735	70784735	+	706.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9854.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	1.5	25.5	9.5	3.0	25.5	8.0
Merged-chr14-55607510-2	chr14	55607010	55608010	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159418, intron 6 of 8)	intron (NM_001159418, intron 6 of 8)	2931.0	NM_001159418	16391.0	Mm.2032	NM_008394	ENSMUSG00000002325	Irf9	Irf-9|Isgf3g|p48	interferon regulatory factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-6698952-2	chr5	6698452	6699452	+	706.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2-int|LTR|ERVL-MaLR	-605212.0	NM_027603	70920.0	Mm.158494	NM_027603	ENSMUSG00000040514	Tex47	4921511H03Rik	testis expressed 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79389506-3	chr8	79388992	79389992	+	706.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	9976.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56591600-2	chr19	56591100	56592100	+	706.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_025811, exon 7 of 11)	exon (NM_025811, exon 7 of 11)	43339.0	NM_025811	66866.0	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14994544-2	chr8	14994044	14995044	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037736, intron 26 of 27)	intron (NM_001037736, intron 26 of 27)	-16481.0	NM_029116	74901.0	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	3.5	0.0	0.5	0.0	3.0	0.0
Merged-chr17-73034199-1	chr17	73033699	73034699	+	706.0	f0_c57.idr	Intergenic	Intergenic	-73786.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	18.5	77.0	44.5	20.5	36.5	43.5
Merged-chr12-86084544-2	chr12	86084044	86085044	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029601, intron 1 of 7)	intron (NM_029601, intron 1 of 7)	1983.0	NM_001199843	76411.0	Mm.292345	NM_029601	ENSMUSG00000007867	Ift43	1700019E19Rik|R75064	intraflagellar transport 43	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58015595-2	chr13	58015095	58016095	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195075, intron 13 of 16)	intron (NM_001195075, intron 13 of 16)	7605.0	NR_030544	100124491.0		NR_030544	ENSMUSG00000077962	Mir874	Mirn874|mir-874|mmu-mir-874	microRNA 874	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104221159-2	chr8	104220659	104221659	+	706.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27399.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81937246-2	chr15	81936746	81937746	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145473, intron 1 of 3)	intron (NM_145473, intron 1 of 3)	487.0	NM_145473	105859.0	Mm.22524	NM_145473	ENSMUSG00000042109	Csdc2	AI415250|AI481750|Pippin	cold shock domain containing C2, RNA binding	protein-coding	5.0	0.0	0.5	0.5	0.0	0.0
Merged-chr4-95195937-2	chr4	95195437	95196437	+	706.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143715.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-123353423-1	chr3	123352923	123353923	+	706.0	f1_balb.idr	exon (NM_027135, exon 16 of 23)	exon (NM_027135, exon 16 of 23)	32567.0	NM_201638	210529.0	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding	0.0	4.5	4.5	1.0	4.0	0.0
Merged-chr14-29969769-2	chr14	29969269	29970269	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019979, intron 1 of 4)	intron (NM_019979, intron 1 of 4)	1389.0	NM_019979	80795.0	Mm.104491	NM_019979	ENSMUSG00000042682	Selenok	1110001C03Rik|AA673253|HSPC030|Hsp30|Selk	selenoprotein K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-61846513-3	chr5	61846018	61847018	+	706.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37675.0	NM_019468	14380.0	Mm.347430	NM_019468	ENSMUSG00000089992	G6pd2	G6pdx-ps1|Gpd-2|Gpd2	glucose-6-phosphate dehydrogenase 2	protein-coding	12.5	8.0	3.5	4.5	8.5	0.5
Merged-chr12-76576763-2	chr12	76576263	76577263	+	706.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153804, exon 18 of 19)	exon (NM_153804, exon 18 of 19)	-28838.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-17982972-1	chr5	17982472	17983472	+	706.0	f0_balb.idr	intron (NM_001081143, intron 1 of 7)	intron (NM_001081143, intron 1 of 7)	20402.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19938522-1	chr10	19938022	19939022	+	706.0	f0_balb.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	3996.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30205590-3	chr7	30205086	30206086	+	705.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ETnERV-int|LTR|ERVK	-10433.0	NM_009795	12336.0	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|Cdps|Css1|D7Ertd146e	calpain, small subunit 1	protein-coding	4.0	9.0	6.5	0.0	12.5	7.5
Merged-chr4-103104120-3	chr4	103103633	103104633	+	705.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146254, intron 1 of 16)	intron (NM_146254, intron 1 of 16)	10166.0	NM_146254	242584.0	Mm.374877	NM_146254	ENSMUSG00000035126	Wdr78	BC028975	WD repeat domain 78	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103218494-3	chr11	103217967	103218967	+	705.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177801)	promoter-TSS (NM_177801)	-35.0	NM_177801	328019.0	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90635450-2	chr2	90634950	90635950	+	705.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41765.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132021172-2	chr2	132020672	132021672	+	705.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_175445, intron 1 of 10)	intron (NM_175445, intron 1 of 10)	8816.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-105495911-2	chr9	105495405	105496405	+	705.875	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175025)	promoter-TSS (NM_175025)	-772.0	NM_001253836	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	82.5	119.0	92.0	11.5	90.0	48.0
Merged-chr17-70969888-2	chr17	70969348	70970348	+	705.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20668.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	13.0	55.0	25.0	26.0	29.5	28.5
Merged-chr9-13841329-2	chr9	13840829	13841829	+	705.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_176836, intron 9 of 9)	intron (NM_176836, intron 9 of 9)	13613.0	NM_176836	72826.0	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21462794-2	chr9	21462294	21463294	+	705.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 2 of 19)	PB1D7|SINE|Alu	33770.0	NR_029585	387194.0		NR_029585	ENSMUSG00000065547	Mir199a-1	Mirn199|Mirn199a-1|mir-199a-1	microRNA 199a-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35771204-2	chr16	35770707	35771707	+	705.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_152314, intron 1 of 8)	RMER17C|LTR|ERVK	821.0	NM_175111	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	0.0	3.0	0.0	0.0	0.0	0.0
Merged-chr17-29474258-3	chr17	29473763	29474763	+	705.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamTip2|DNA|hAT-Tip100	-16782.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.0	3.5	3.0	0.0	3.5	0.0
Merged-chr1-180226624-3	chr1	180226146	180227146	+	705.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011183)	TTS (NM_011183)	19304.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137719501-2	chr5	137719001	137720001	+	705.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20301.0	NM_175521	243300.0	Mm.74750	NM_175521	ENSMUSG00000045348	Nyap1	6430598A04Rik	neuronal tyrosine-phosphorylated phosphoinositide 3-kinase adaptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79049451-2	chr2	79048951	79049951	+	705.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	179773.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135269344-4	chr1	135268838	135269838	+	705.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159624, intron 4 of 9)	PB1D10|SINE|Alu	-10866.0	NM_007921	13710.0	Mm.441439	NM_007921	ENSMUSG00000003051	Elf3	ESE-1|ESX|jen	E74-like factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35026573-2	chr12	35026073	35027073	+	705.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-20616.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	24.5	56.5	36.0	11.0	29.0	43.0
Merged-chr11-50287899-2	chr11	50287399	50288399	+	705.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 1 of 4)	intron (NM_175334, intron 1 of 4)	4437.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71664605-2	chr8	71664105	71665105	+	705.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 3 of 41)	intron (NM_001029873, intron 3 of 41)	7152.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	0.0	0.0	0.0	3.5	0.0	8.5
Merged-chr1-127204272-2	chr1	127203772	127204772	+	705.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145128)	promoter-TSS (NM_145128)	-714.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83812650-2	chr7	83812150	83813150	+	705.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17811.0	NM_029335	75556.0	Mm.17649	NM_029335	ENSMUSG00000011154	Cfap161	1700026D08Rik|AW047638|AW551802	cilia and flagella associated protein 161	protein-coding	0.0	0.0	0.0	2.0	0.0	0.5
Merged-chr1-183622774-2	chr1	183622274	183623274	+	705.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126203.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51266273-4	chr14	51265786	51266786	+	705.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10174.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	0.0	2.0	1.0	1.5	1.5	1.5
Merged-chr15-6065249-3	chr15	6064765	6065765	+	705.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20561.0	NR_155429	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55541001-3	chr14	55540500	55541500	+	705.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028994, intron 1 of 9)	intron (NM_028994, intron 1 of 9)	734.0	NM_028994	74551.0	Mm.29856	NM_028994	ENSMUSG00000040618	Pck2	1810010O14Rik|9130022B02Rik|PEPCK-M	phosphoenolpyruvate carboxykinase 2 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-11807603-3	chr18	11807094	11808094	+	705.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31680.0	NM_001146287	63955.0	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	0.0	0.5	3.5	1.0	0.0	1.0
Merged-chr2-152247388-2	chr2	152246888	152247888	+	705.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_007788, intron 1 of 12)	PB1D10|SINE|Alu	20548.0	NM_007788	12995.0	Mm.23692	NM_007788	ENSMUSG00000074698	Csnk2a1	CK2|Csnk2a1-rs4	casein kinase 2, alpha 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168469297-3	chr2	168468761	168469761	+	705.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121104.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	5.5	1.0	1.5	1.0	3.0	0.0
Merged-chr19-11928306-3	chr19	11927815	11928815	+	705.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172635, intron 9 of 18)	B2_Mm2|SINE|B2	4587.0	NR_105960	102465601.0		NR_105960	ENSMUSG00000104979	Mir6994	mmu-mir-6994	microRNA 6994	ncRNA	16.0	28.5	15.5	7.0	13.0	16.0
Merged-chr7-81828205-2	chr7	81827705	81828705	+	705.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146193, intron 1 of 7)	intron (NM_146193, intron 1 of 7)	1226.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79163317-2	chr3	79162817	79163817	+	705.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17442.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	3.5	18.0	5.0	4.0	5.5	12.5
Merged-chr3-53465714-2	chr3	53465214	53466214	+	705.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_173382, intron 1 of 12)	intron (NM_173382, intron 1 of 12)	1897.0	NM_173382	212127.0	Mm.491292	NM_173382	ENSMUSG00000049504	Proser1	2810046L04Rik|9330161F11	proline and serine rich 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58410584-2	chr15	58410077	58411077	+	705.666626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-4891.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	10.0	14.5	8.0	2.0	12.0	13.0
Merged-chr14-8049514-2	chr14	8049014	8050014	+	705.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_025341, intron 6 of 8)	intron (NM_025341, intron 6 of 8)	-30799.0	NM_001348727	109729085.0	Mm.210048	NM_001348727		Htd2	-	hydroxyacyl-thioester dehydratase type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46308020-3	chr4	46307513	46308513	+	705.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-36181.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	1.5	1.5	1.0	1.5	1.5	1.0
Merged-chr15-96288664-3	chr15	96288189	96289189	+	705.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175251, intron 2 of 20)	intron (NM_175251, intron 2 of 20)	1167.0	NM_175251	77044.0	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|BAF200|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173763276-2	chr1	173762781	173763781	+	705.599976	f0_c57.idr|f1_balb.idr	intron (NM_008329, intron 1 of 8)	Lx8|LINE|L1	3638.0	NM_008329	15951.0	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-108304928-2	chr5	108304344	108305344	+	705.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-8081.0	NM_001081234	433931.0	Mm.319881	NM_001081234	ENSMUSG00000029263	Pigg	Gpi7	phosphatidylinositol glycan anchor biosynthesis, class G	protein-coding	0.0	2.0	1.0	1.0	2.5	0.0
Merged-chr7-43309261-2	chr7	43308761	43309761	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027264, intron 2 of 4)	intron (NM_027264, intron 2 of 4)	4039.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50994311-2	chr17	50993828	50994828	+	705.5	f0_balb.idr|f0_c57.idr	intron (NM_028162, intron 3 of 21)	RLTR14-int|LTR|ERV1	165050.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-145608005-2	chr5	145607505	145608505	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_2-I_MM-int|LTR|ERVK	-23275.0	NM_001105159	100041375.0	Mm.489591	NM_001105159	ENSMUSG00000075552	Cyp3a41b	-	cytochrome P450, family 3, subfamily a, polypeptide 41B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10444748-1	chr17	10444248	10445248	+	705.5	f0_balb.idr	intron (NM_027032, intron 4 of 4)	(TG)n|Simple_repeat|Simple_repeat	-11468.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146676036-2	chr5	146675536	146676536	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-90797.0	NM_001359057	14738.0	Mm.153539	NM_008151	ENSMUSG00000041468	Gpr12	Gpcr01|Gpcr12|Gpcr20|Gpcr21	G-protein coupled receptor 12	protein-coding	4.5	3.0	8.5	2.0	0.0	3.0
Merged-chr14-17755202-2	chr14	17754702	17755702	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 1 of 9)	intron (NM_001113417, intron 1 of 9)	94242.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	4.5
Merged-chr16-18678602-2	chr16	18678102	18679102	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48664.0	NM_213614	18951.0	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99711740-2	chr10	99711240	99712240	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47918.0	NM_027945	71832.0	Mm.483162	NM_027945	ENSMUSG00000046934	Csl	1700007H16Rik	citrate synthase like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114263436-2	chr6	114262936	114263936	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19199.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59817079-2	chr15	59816579	59817579	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-22120.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37621275-2	chr13	37620775	37621775	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-204763.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93514118-2	chr1	93513527	93514527	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145519, intron 1 of 26)	intron (NM_145519, intron 1 of 26)	1923.0	NM_145519	227377.0	Mm.243091	NM_145519	ENSMUSG00000034066	Farp2	AI465173|BC009153|D030026M03Rik|Fir|mKIAA0793	FERM, RhoGEF and pleckstrin domain protein 2	protein-coding	0.5	7.5	2.5	0.0	7.5	1.0
Merged-chr2-124671192-2	chr2	124670692	124671692	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	17611.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-52198955-2	chr14	52198455	52199455	+	705.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_201637, exon 37 of 37)	exon (NM_201637, exon 37 of 37)	-1716.0	NM_033618	114741.0	Mm.21662	NM_033618	ENSMUSG00000035726	Supt16	Cdc68|Fact140|Spt16|Supt16h	suppressor of Ty 16	protein-coding	8.5	1.0	3.5	2.0	1.0	2.0
Merged-chr4-70409315-2	chr4	70408815	70409815	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313762, intron 1 of 33)	intron (NM_001313762, intron 1 of 33)	1120.0	NM_001313762	214444.0	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-15205768-2	chr14	15205232	15206232	+	705.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-231891.0	NR_152122	77981.0	Mm.138039	NM_001033183		B230110C06Rik	-	RIKEN cDNA B230110C06 gene	ncRNA	3.0	0.0	0.5	0.0	1.5	2.0
Merged-chr15-86161827-2	chr15	86161327	86162327	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 3 of 12)	intron (NM_145475, intron 3 of 12)	-23901.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	11.0	10.5	27.0	12.0	11.5	33.5
Merged-chr5-114673123-2	chr5	114672623	114673623	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019821, intron 4 of 4)	intron (NM_019821, intron 4 of 4)	-14702.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115977828-2	chr6	115977328	115978328	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026376, intron 5 of 35)	intron (NM_026376, intron 5 of 35)	17177.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-72997212-2	chr2	72996712	72997712	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16766.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35126571-2	chr9	35126071	35127071	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027030, intron 4 of 5)	intron (NM_027030, intron 4 of 5)	-9707.0	NM_009178	20443.0	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	SIAT4-C|ST3Gal IV|ST3GalIV|Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74433454-2	chr17	74432954	74433954	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 8 of 8)	intron (NM_001033367, intron 8 of 8)	25654.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37348914-2	chr10	37348414	37349414	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-209988.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25536642-2	chr15	25536142	25537142	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85908.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-20218254-2	chr17	20217754	20218754	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001104567, intron 5 of 5)	Lx|LINE|L1	16618.0	NM_001104567	627743.0	Mm.379363	NM_001104567	ENSMUSG00000091670	Vmn2r105	EG627743	vomeronasal 2, receptor 105	protein-coding	0.0	2.5	0.0	0.0	0.0	1.0
Merged-chr15-55114164-4	chr15	55113696	55114696	+	705.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045093)	promoter-TSS (NR_045093)	-614.0	NR_045093	100503794.0	Mm.360519	NR_045093	ENSMUSG00000053749	Gm9920	-	predicted gene 9920	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75781482-2	chr7	75780983	75781983	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66855.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	7.0	12.5	4.5	15.0	7.5	3.0
Merged-chr18-69574504-2	chr18	69574004	69575004	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	228344.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102438726-2	chr12	102438210	102439210	+	705.5	f0_balb.idr|f0_c57.idr	intron (NM_011175, intron 1 of 13)	intron (NM_011175, intron 1 of 13)	1103.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45198116-2	chr2	45197616	45198616	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80674.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-108457086-2	chr4	108456586	108457586	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2340.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	0.5	3.0	0.0	1.0	3.5	0.0
Merged-chr17-29434392-2	chr17	29433900	29434900	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-56645.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	10.0	21.0	11.0	2.5	50.0	7.5
Merged-chr11-62645089-2	chr11	62644589	62645589	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198861, intron 1 of 3)	intron (NM_198861, intron 1 of 3)	2960.0	NM_001357955	192976.0	Mm.339972	NM_198861	ENSMUSG00000046417	Lrrc75a	Fam211a	leucine rich repeat containing 75A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118363866-2	chr11	118363366	118364366	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8455.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46657829-2	chr19	46657329	46658329	+	705.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177812)	TTS (NM_001177812)	15171.0	NM_007809	13074.0	Mm.1262	NM_007809	ENSMUSG00000003555	Cyp17a1	Cyp17|p450c17	cytochrome P450, family 17, subfamily a, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80126863-2	chr17	80126363	80127363	+	705.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176963)	promoter-TSS (NM_176963)	-608.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90742962-2	chr16	90742462	90743462	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029844, intron 1 of 2)	intron (NM_029844, intron 1 of 2)	4638.0	NM_029844	77037.0	Mm.22455	NM_029844	ENSMUSG00000039956	Mrap	1110025G12Rik|C21ORF61|Falp|ORF61	melanocortin 2 receptor accessory protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-84442405-2	chr11	84441905	84442905	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019816, intron 12 of 12)	intron (NM_019816, intron 12 of 12)	71096.0	NM_019816	56321.0	Mm.257482	NM_019816	ENSMUSG00000018697	Aatf	4933415H02Rik|5830465M17Rik|Che-1|Trb	apoptosis antagonizing transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65785374-2	chr17	65784874	65785874	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152099, intron 2 of 20)	intron (NR_152099, intron 2 of 20)	2019.0	NR_104465	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	22.0	11.0	21.5	6.0	12.0	16.5
Merged-chr9-21921056-2	chr9	21920556	21921556	+	705.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001253870)	TTS (NM_001253870)	-2873.0	NM_001324531	19340.0	Mm.260157	NM_031874	ENSMUSG00000019066	Rab3d	C130057E11Rik	RAB3D, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-102671268-2	chr13	102670768	102671768	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22279.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	1.5	0.0	0.5	1.5	0.0	0.5
Merged-chr2-27743258-2	chr2	27742758	27743758	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 4 of 9)	intron (NM_001290481, intron 4 of 9)	32675.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111224311-2	chr8	111223811	111224811	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 1 of 25)	intron (NM_009149, intron 1 of 25)	34891.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107881353-2	chr4	107880853	107881853	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282737, intron 2 of 4)	intron (NM_001282737, intron 2 of 4)	1598.0	NM_001282737	17149.0	Mm.808	NM_001282737	ENSMUSG00000028609	Magoh	Mago-m|Mos2	mago homolog, exon junction complex core component	protein-coding	0.0	0.0	0.5	0.0	6.0	0.0
Merged-chr7-45419110-2	chr7	45418610	45419610	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1836.0	NM_008497	16866.0	Mm.57061	NM_008497	ENSMUSG00000100916	Lhb	Gm29035|LH|LH-B|LSH-B|LSH-beta	luteinizing hormone beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113844833-2	chr13	113844333	113845333	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	50325.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111176520-2	chr10	111176020	111177020	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003717, intron 1 of 22)	intron (NM_001003717, intron 1 of 22)	11718.0	NM_175489	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45370246-2	chr7	45369746	45370746	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011698, intron 1 of 5)	CpG-13114	318.0	NM_011698	22342.0	Mm.20472	NM_011698	ENSMUSG00000003872	Lin7b	LIN-7B|MALS-2|Veli2	lin-7 homolog B (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71934492-2	chr6	71933992	71934992	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009088, intron 12 of 33)	intron (NM_009088, intron 12 of 33)	25439.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101119757-3	chr13	101119238	101120238	+	705.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112389.0	NR_046158	328324.0	Mm.402274	NR_046158	ENSMUSG00000114590	5930438M14Rik	5930438M14	RIKEN cDNA 5930438M14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92149417-3	chr5	92148900	92149900	+	705.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019490, intron 1 of 23)	intron (NM_019490, intron 1 of 23)	11462.0	NM_019490	56041.0	Mm.15868	NM_019490	ENSMUSG00000029407	Uso1	115kDa|TAP|Vdp	USO1 vesicle docking factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-52024682-3	chr12	52024182	52025182	+	705.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008159, intron 1 of 1)	intron (NM_008159, intron 1 of 1)	3381.0	NM_008159	14762.0	Mm.12890	NM_008159	ENSMUSG00000035148	Gpr33	-	G protein-coupled receptor 33	protein-coding	0.0	0.0	2.5	0.0	0.0	3.0
Merged-chr8-71297806-3	chr8	71297312	71298312	+	705.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	25098.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	51.0	51.5	54.5	58.5	61.5	93.0
Merged-chr11-70456966-3	chr11	70456522	70457522	+	705.3809200000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151496, intron 4 of 6)	intron (NR_151496, intron 4 of 6)	-2411.0	NM_001348337	574428.0	Mm.425692	NM_001029929	ENSMUSG00000040829	Zmynd15	-	zinc finger, MYND-type containing 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-101545805-2	chr6	101545298	101546298	+	705.375	f0_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-167901.0	NM_018884	55983.0	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-101461034-2	chr14	101460534	101461534	+	705.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 12 of 18)	intron (NM_001081278, intron 12 of 18)	148157.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-56065303-2	chr8	56064803	56065803	+	705.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_080438, intron 5 of 9)	intron (NM_080438, intron 5 of 9)	124478.0	NM_080438	110304.0	Mm.307061	NM_080438	ENSMUSG00000038257	Glra3	-	glycine receptor, alpha 3 subunit	protein-coding	2.0	0.0	5.0	1.5	0.0	2.0
Merged-chr14-55772333-2	chr14	55771833	55772833	+	705.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_001361604, exon 19 of 26)	exon (NM_001361604, exon 19 of 26)	6371.0	NM_008519	16995.0	Mm.20853	NM_008519	ENSMUSG00000046908	Ltb4r1	BLT1|BLTR|Ltb4r|mBLTR	leukotriene B4 receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58892307-3	chr9	58891764	58892764	+	705.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008684, intron 23 of 28)	intron (NM_008684, intron 23 of 28)	68752.0	NM_001081192	330953.0	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86216643-3	chr1	86216141	86217141	+	705.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027456, intron 19 of 20)	intron (NM_027456, intron 19 of 20)	61861.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-24437501-2	chr18	24437001	24438001	+	705.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-8331.0	NR_029573	387182.0		NR_029573	ENSMUSG00000065532	Mir187	Mirn187|mir-187|mmu-mir-187	microRNA 187	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43724950-3	chr4	43724451	43725451	+	705.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2247.0	NM_027511	100039781.0	Mm.18796	NM_027511	ENSMUSG00000071001	Hrct1	3830408D24Rik	histidine rich carboxyl terminus 1	protein-coding	1.5	2.0	1.5	0.0	5.0	1.5
Merged-chr1-36566563-4	chr1	36566019	36567019	+	705.287476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-8138.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99469847-4	chr9	99469367	99470367	+	705.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028123)	promoter-TSS (NR_028123)	-554.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134456080-3	chr5	134455578	134456578	+	705.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081462, intron 1 of 29)	intron (NM_001081462, intron 1 of 29)	184.0	NM_001081465	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90035950-2	chr9	90035450	90036450	+	705.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18317.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24817663-4	chr7	24817154	24818154	+	705.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1141.0	NR_045096	545936.0	Mm.376228	NR_045096	ENSMUSG00000011350	Gm5893	EG545936|Gm477	predicted gene 5893	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22478886-4	chr8	22478371	22479371	+	705.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011394, intron 1 of 10)	intron (NM_011394, intron 1 of 10)	-1992.0	NM_001146117	102032.0	Mm.378231	NM_001012667	ENSMUSG00000031534	Smim19	AI316807|BG694986|EST-c39	small integral membrane protein 19	protein-coding	0.0	0.0	6.5	6.5	0.0	4.0
Merged-chr3-79846779-2	chr3	79846281	79847281	+	705.25	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4119.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	4.5	14.0	2.5	8.5	0.5	2.5
Merged-chr17-71693934-2	chr17	71693434	71694434	+	705.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_177087, intron 6 of 19)	intron (NM_177087, intron 6 of 19)	20673.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-36730843-3	chr7	36730412	36731412	+	705.233337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172298, intron 1 of 1)	(TCC)n|Simple_repeat|Simple_repeat	32794.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	2.0	5.5	1.0	2.0	23.5	12.5
Merged-chr11-8625420-3	chr11	8624907	8625907	+	705.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	39128.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139609178-3	chr4	139608671	139609671	+	705.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205173, intron 5 of 8)	intron (NM_001205173, intron 5 of 8)	-13723.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	7.0	7.0	2.0	2.5	1.5	3.0
Merged-chr4-33124658-3	chr4	33124159	33125159	+	705.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-7897.0	NM_008075	14408.0	Mm.14116	NM_008075	ENSMUSG00000028280	Gabrr1	GABA-C	gamma-aminobutyric acid (GABA) C receptor, subunit rho 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134632327-3	chr6	134631808	134632808	+	705.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026345, exon 1 of 4)	5' UTR (NM_026345, exon 1 of 4)	180.0	NM_026345	67729.0	Mm.57648	NM_026345	ENSMUSG00000032718	Mansc1	9130403P13Rik	MANSC domain containing 1	protein-coding	6.0	8.0	8.5	7.0	8.5	7.5
Merged-chr5-29731804-2	chr5	29731304	29732304	+	705.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-4094.0	NM_001359198	23950.0	Mm.290110	NM_011847	ENSMUSG00000029131	Dnajb6	HSJ-2|Mrj|mDj4	DnaJ heat shock protein family (Hsp40) member B6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76483875-2	chr11	76483375	76484375	+	705.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 2 of 21)	intron (NM_001346670, intron 2 of 21)	10620.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	8.5	18.0	12.5	6.0	28.5	14.0
Merged-chr5-145111449-2	chr5	145110949	145111949	+	705.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-2807.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115496751-3	chr11	115496215	115497215	+	705.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008258)	TTS (NM_008258)	-4901.0	NM_015807	50773.0	Mm.390379	NM_015807	ENSMUSG00000020736	Nt5c	Dnt|Dnt1|Umph-2|Umph2	5',3'-nucleotidase, cytosolic	protein-coding	12.0	8.5	9.5	13.0	19.5	13.0
Merged-chr17-47923269-2	chr17	47922769	47923769	+	705.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028767, intron 1 of 16)	intron (NM_028767, intron 1 of 16)	1363.0	NM_028767	74123.0	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59997809-2	chr10	59997309	59998309	+	705.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025514, intron 1 of 3)	intron (NM_025514, intron 1 of 3)	-4996.0	NM_026937	69090.0	Mm.155839	NM_026937	ENSMUSG00000044475	Ascc1	1810015P09Rik|AI550520|ASC1p50|CGI-18	activating signal cointegrator 1 complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25571072-3	chr9	25570589	25571589	+	705.083313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 3 of 7)	intron (NM_026189, intron 3 of 7)	89492.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-20673364-1	chr17	20672864	20673864	+	705.0	f1_c57bl6.idr	Intergenic	RMER13A|LTR|ERVK	-14144.0	NM_134191	171225.0	Mm.377184	NM_134191	ENSMUSG00000042848	Vmn1r226	V1re2	vomeronasal 1 receptor 226	protein-coding	1.5	0.0	0.0	0.0	0.0	1.0
Merged-chr16-4080908-2	chr16	4080408	4081408	+	705.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3098.0	NM_026508	68015.0	Mm.123366	NM_026508	ENSMUSG00000005981	Trap1	2410002K23Rik|HSP75	TNF receptor-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46914147-2	chr8	46913647	46914647	+	705.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72740.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-43997144-2	chr10	43996644	43997644	+	705.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172393, exon 2 of 20)	exon (NM_172393, exon 2 of 20)	7702.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	6.0	5.0	4.0	2.5	5.0	6.5
Merged-chr14-21751831-1	chr14	21751331	21752331	+	705.0	f1_c57bl6.idr	intron (NM_001359953, intron 1 of 5)	intron (NM_001359953, intron 1 of 5)	279.0	NM_001359953	67630.0	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	69.0	185.0	165.0	54.0	162.5	125.5
Merged-chr2-26467824-2	chr2	26467324	26468324	+	705.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008714, exon 26 of 34)	exon (NM_008714, exon 26 of 34)	2295.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62496520-2	chr15	62496020	62497020	+	705.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-277069.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106034209-2	chr11	106033709	106034709	+	705.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001037712)	TTS (NM_001037712)	-2663.0	NM_027946	71833.0	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-60565559-2	chr1	60565059	60566059	+	705.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045513, intron 1 of 13)	intron (NM_001045513, intron 1 of 13)	1206.0	NM_001045513	77300.0	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84590887-2	chr12	84590387	84591387	+	705.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301427, intron 3 of 4)	intron (NM_001301427, intron 3 of 4)	21059.0	NM_001301427	12677.0	Mm.4405	NM_007701	ENSMUSG00000021239	Vsx2	Chx10|Hox-10|Hox10|or	visual system homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20695199-3	chr18	20694712	20695712	+	705.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 5 of 8)	intron (NM_019737, intron 5 of 8)	-29952.0	NR_155534	102633478.0		NR_155534	ENSMUSG00000085595	Gm16090	-	predicted gene 16090	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88384261-2	chr3	88383761	88384761	+	705.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007541, intron 1 of 3)	intron (NM_007541, intron 1 of 3)	205.0	NM_007541	12096.0	Mm.389459	NM_007541	ENSMUSG00000074483	Bglap	BGP|Bglap1|OC|OG1|mOC-A	bone gamma carboxyglutamate protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160602098-2	chr2	160601598	160602598	+	705.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43799.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24948194-2	chr2	24947694	24948694	+	705.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-1583.0	NM_026021	67187.0	Mm.296106	NM_026021	ENSMUSG00000026974	Zmynd19	2700064H14Rik|AA536891|AU014915|mizip	zinc finger, MYND domain containing 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135602448-2	chr3	135601948	135602948	+	705.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 16 of 24)	intron (NM_008689, intron 16 of 24)	89099.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.0	3.0	0.0	4.0	2.0	3.0
Merged-chr8-3226675-1	chr8	3226175	3227175	+	705.0	f1_c57bl6.idr	intron (NM_001330056, intron 2 of 21)	intron (NM_001330056, intron 2 of 21)	52942.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	3.0	11.5	1.0	0.0	1.0	1.5
Merged-chr7-96790506-3	chr7	96790005	96791005	+	705.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045874)	TTS (NR_045874)	11044.0	NR_045874	791381.0	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	-	predicted gene 15413	ncRNA	3.0	0.0	0.0	0.0	0.5	4.5
Merged-chr16-97963373-2	chr16	97962873	97963873	+	705.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081684)	promoter-TSS (NM_001081684)	-751.0	NM_001320385	114565.0	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-135417624-2	chr6	135417124	135418124	+	705.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50131.0	NM_001288627	13730.0	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	0.0	0.0	2.0	6.0	1.0	2.0
Merged-chr9-22468903-2	chr9	22468403	22469403	+	705.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018739)	promoter-TSS (NM_018739)	-547.0	NM_018739	55934.0	Mm.38235	NM_018739	ENSMUSG00000032239	Rp9	PAP-1|Rp9h	retinitis pigmentosa 9 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19875535-2	chr10	19875035	19876035	+	705.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161825, intron 7 of 8)	intron (NM_001161825, intron 7 of 8)	-24076.0	NM_029529	76157.0	Mm.74324	NM_029529	ENSMUSG00000050473	Slc35d3	6230421J19Rik|Frcl1	solute carrier family 35, member D3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161412303-3	chr1	161411814	161412814	+	705.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009452, intron 1 of 2)	intron (NM_009452, intron 1 of 2)	16876.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	6.5	8.0	7.0	1.5	1.0	1.5
Merged-chr17-83275375-2	chr17	83274875	83275875	+	705.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60092.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181236409-2	chr2	181235909	181236909	+	705.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_183162, exon 7 of 19)	exon (NM_183162, exon 7 of 19)	5618.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113760802-2	chr6	113760302	113761302	+	705.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347365, exon 20 of 24)	exon (NM_001347365, exon 20 of 24)	-20121.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79628195-2	chr12	79627697	79628697	+	705.0	f0_balb.idr|f0_c57.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	296536.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3343432-2	chr12	3342932	3343932	+	705.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-21700.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138191073-2	chr5	138190577	138191577	+	705.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178612, intron 3 of 5)	RSINE1|SINE|B4	-3237.0	NM_177878	330216.0	Mm.19719	NM_177878	ENSMUSG00000049285	Mblac1	-	metallo-beta-lactamase domain containing 1	protein-coding	0.0	3.0	6.0	8.0	0.0	0.5
Merged-chr6-65161956-2	chr6	65161456	65162456	+	705.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17226.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102468789-2	chr11	102468289	102469289	+	705.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010575, intron 1 of 29)	PB1D10|SINE|Alu	1094.0	NM_010575	16399.0	Mm.26646	NM_010575	ENSMUSG00000034664	Itga2b	AI172977|CD41|CD41B|GpIIb|alphaIIb	integrin alpha 2b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91749012-2	chr12	91748512	91749512	+	705.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	B1_Mur4|SINE|Alu	37424.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-69156192-2	chr17	69155692	69156692	+	705.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013813)	promoter-TSS (NM_013813)	-552.0	NM_013813	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122044751-1	chr5	122044251	122045251	+	705.0	f0_balb.idr	intron (NM_001312908, intron 1 of 22)	(CA)n|Simple_repeat|Simple_repeat	3074.0	NM_007804	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	0.0	1.0	0.5	0.0	0.5	0.0
Merged-chr9-83535729-2	chr9	83535229	83536229	+	705.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-12609.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	29.5	25.5	34.5	18.0	31.0	23.0
Merged-chr17-38634051-1	chr17	38633551	38634551	+	705.0	f1_c57bl6.idr	Intergenic	MMERVK10C-int|LTR|ERVK	-5396.0	NM_001177586	100126768.0	Mm.471528	NM_001177586	ENSMUSG00000092342	Esp31	Gm20516	exocrine gland secreted peptide 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58622603-3	chr15	58622099	58623099	+	705.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	200828.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110626504-2	chr7	110626004	110627004	+	705.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1153.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66081751-2	chr5	66081251	66082251	+	705.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	16428.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	6.0	10.0	2.5	0.5	4.0	2.0
Merged-chr9-22003949-2	chr9	22003449	22004449	+	705.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293650, intron 3 of 17)	intron (NM_001293650, intron 3 of 17)	961.0	NM_001293650	19089.0	Mm.214593	NM_008925	ENSMUSG00000003402	Prkcsh	80K-H|PKCSH	protein kinase C substrate 80K-H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121594152-2	chr14	121593652	121594652	+	705.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081039, intron 37 of 53)	intron (NM_001081039, intron 37 of 53)	-88898.0	NM_053079	56643.0	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	2.5	14.5	0.0	5.0	1.5	0.0
Merged-chr17-83268941-2	chr17	83268441	83269441	+	705.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR40a|LTR|ERVL	53658.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111406881-2	chr12	111406381	111407381	+	705.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001101503)	promoter-TSS (NM_001101503)	72.0	NM_001358956	380787.0	Mm.125602	NM_001101503	ENSMUSG00000087075	Lbhd2	A230065H16Rik|Gm898|Lbh2	LBH domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-105562657-3	chr11	105562160	105563160	+	705.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27326.0	NM_181071	77097.0	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124241064-3	chr8	124240504	124241504	+	705.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139272, intron 1 of 15)	intron (NM_139272, intron 1 of 15)	9610.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	19.5	29.0	23.5	12.0	3.5	12.5
Merged-chr16-87659916-1	chr16	87659416	87660416	+	705.0	f1_balb.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-39038.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	10.0	20.0	10.0	16.0	3.5	3.5
Merged-chr8-97447989-1	chr8	97447489	97448489	+	705.0	f1_balb.idr	Intergenic	RMER17B|LTR|ERVK	-1559624.0	NM_010325	14719.0	Mm.230169	NM_010325	ENSMUSG00000031672	Got2	AL022787|FABP-pm|Got-2|Kyat4|mAspAT	glutamatic-oxaloacetic transaminase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.5	2.5	0.5
Merged-chr4-99175344-1	chr4	99174844	99175844	+	705.0	f0_balb.idr	Intergenic	Intergenic	-18590.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	21.5	7.5	18.0	8.0	15.5	23.0
Merged-chr9-21201291-2	chr9	21200791	21201791	+	705.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_019798, exon 3 of 10)	exon (NM_019798, exon 3 of 10)	4586.0	NM_019798	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35867983-2	chr16	35867483	35868483	+	705.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039530, intron 1 of 16)	intron (NM_001039530, intron 1 of 16)	3399.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56272680-2	chr17	56272180	56273180	+	705.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_174989, intron 1 of 1)	intron (NM_174989, intron 1 of 1)	4087.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88550866-2	chr4	88550366	88551366	+	705.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7379.0	NM_206870	242517.0	Mm.377261	NM_206870	ENSMUSG00000096011	Ifna15	Gm12597|Ifnaa|MuIFN-alpha-A	interferon alpha 15	protein-coding	0.5	0.5	1.5	0.5	0.5	1.5
Merged-chr17-50196199-3	chr17	50195679	50196679	+	705.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-5682.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-18013842-1	chr5	18013342	18014342	+	705.0	f0_balb.idr	intron (NM_001081143, intron 5 of 7)	intron (NM_001081143, intron 5 of 7)	51272.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75142229-2	chr11	75141729	75142729	+	705.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 14 of 18)	intron (NM_001002764, intron 14 of 18)	25923.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	9.0	5.0	9.0	4.0	18.0	5.0
Merged-chr16-76053321-1	chr16	76052821	76053821	+	705.0	f0_balb.idr	Intergenic	L2c|LINE|L2	52537.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-72604732-1	chr17	72604232	72605232	+	705.0	f0_balb.idr	promoter-TSS (NM_007439)	promoter-TSS (NM_007439)	-425.0	NM_007439	11682.0	Mm.311854	NM_007439	ENSMUSG00000055471	Alk	CD246|Tcrz	anaplastic lymphoma kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66135267-2	chr7	66134767	66135767	+	705.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081163, intron 2 of 2)	intron (NM_001081163, intron 2 of 2)	25752.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84876170-2	chr12	84875670	84876670	+	705.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028577, exon 1 of 1)	non-coding (NR_028577, exon 1 of 1)	325.0	NM_013589	16997.0	Mm.3900	NM_013589	ENSMUSG00000002020	Ltbp2	AW208642	latent transforming growth factor beta binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31954443-2	chr16	31953943	31954943	+	705.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026554, intron 2 of 3)	PB1D9|SINE|Alu	5897.0	NM_026554	68092.0	Mm.290027	NM_026554	ENSMUSG00000022774	Ncbp2	20kDa|5930413E18Rik|AA536802|AI843301|C79367	nuclear cap binding protein subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-65495031-2	chr1	65494531	65495531	+	705.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	183774.0	NM_139270	213527.0	Mm.294225	NM_139270	ENSMUSG00000025946	Pth2r	Pthr2	parathyroid hormone 2 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22127069-1	chr8	22126569	22127569	+	705.0	f1_balb.idr	Intergenic	Intergenic	-2002.0	NM_001347318	330721.0	Mm.113940	NM_177898	ENSMUSG00000037738	Nek5	6530411J22|BB049667	NIMA (never in mitosis gene a)-related expressed kinase 5	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr2-74578272-3	chr2	74577817	74578817	+	705.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110209, intron 1 of 13)	intron (NM_001110209, intron 1 of 13)	631.0	NM_001110209	69605.0	Mm.156113	NM_027133	ENSMUSG00000009207	Lnpk	2310011O18Rik|4921514L11Rik|9530051D01Rik|AI666268|Lnp|Lnpk1|Ul|ulnaless	lunapark, ER junction formation factor	protein-coding	0.5	19.0	18.0	5.0	10.0	9.5
Merged-chr12-38645387-2	chr12	38644887	38645887	+	705.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30866.0	NR_045943	73867.0	Mm.78933	NR_045943	ENSMUSG00000112967	4930428E07Rik	-	RIKEN cDNA 4930428E07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67471425-2	chr18	67470925	67471925	+	705.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144867, intron 1 of 6)	intron (NM_144867, intron 1 of 6)	6576.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-68882343-1	chr8	68881843	68882843	+	705.0	f1_c57bl6.idr	intron (NM_008509, intron 1 of 9)	intron (NM_008509, intron 1 of 9)	1788.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	11.0	61.5	48.0	4.0	30.0	18.0
Merged-chr19-46307456-2	chr19	46306956	46307956	+	705.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001177369, exon 7 of 23)	exon (NM_001177369, exon 7 of 23)	1526.0	NM_001177370	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-47917727-3	chr18	47917222	47918222	+	704.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-5119.0	NR_045404	414127.0	Mm.450768	NR_045404		G630055G22Rik	-	RIKEN cDNA G630055G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55561998-3	chr19	55561502	55562502	+	704.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	140202.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102384141-3	chr7	102383626	102384626	+	704.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009287, intron 2 of 11)	intron (NM_009287, intron 2 of 11)	-57569.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	0.0	1.5	2.0	0.0	1.0	0.5
Merged-chr2-118518680-2	chr2	118518133	118519133	+	704.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25954.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	9.5	4.5	9.5	6.0	18.5	4.0
Merged-chr16-95727078-2	chr16	95726578	95727578	+	704.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	24671.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105554309-3	chr8	105553818	105554818	+	704.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013477, intron 1 of 7)	intron (NM_013477, intron 1 of 7)	11746.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-26318927-2	chr10	26318427	26319427	+	704.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359255, intron 12 of 21)	intron (NM_001359255, intron 12 of 21)	55145.0	NM_001359255	237339.0	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	L3MBTL3 histone methyl-lysine binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88299821-2	chr1	88299321	88300321	+	704.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6891.0	NM_134252	171382.0	Mm.218753	NM_134252	ENSMUSG00000036251	Trpm8	CMR1|LTRPC6|LTrpC-6|TRPP8|Trp-p8	transient receptor potential cation channel, subfamily M, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-119868340-3	chr7	119867868	119868868	+	704.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163703, intron 1 of 2)	intron (NM_001163703, intron 1 of 2)	27090.0	NM_173408	233805.0	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12119937-3	chr17	12119434	12120434	+	704.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026644, intron 1 of 8)	intron (NM_026644, intron 1 of 8)	650.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160144176-3	chr2	160143674	160144674	+	704.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	127521.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr15-73791973-4	chr15	73791488	73792488	+	704.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033365, intron 5 of 10)	intron (NM_001033365, intron 5 of 10)	17945.0	NM_001362047	100041273.0	Mm.379154	NM_001362047		Gm3244	-	predicted pseudogene 3244	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73793291-4	chr13	73792780	73793780	+	704.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 7 of 24)	ORR1D2|LTR|ERVL-MaLR	29583.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45551470-2	chr17	45550970	45551970	+	704.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1793.0	NM_001013749	210573.0	Mm.329064	NM_001013749	ENSMUSG00000096847	Tmem151b	Gm323	transmembrane protein 151B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr4-132182006-2	chr4	132181506	132182506	+	704.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30250.0	NM_145393	213541.0	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH domain family 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95073520-2	chr4	95073020	95074020	+	704.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21298.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116615350-1	chr11	116614850	116615850	+	704.75	f0_balb.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	8902.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69228208-2	chr3	69227708	69228708	+	704.708374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	5789.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	7.5	3.0	1.5	2.5	13.0	4.0
Merged-chr11-109365510-4	chr11	109365018	109366018	+	704.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359034, intron 1 of 2)	intron (NM_001359034, intron 1 of 2)	-1864.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	40.0	106.0	91.5	31.5	77.5	87.5
Merged-chr3-10304417-2	chr3	10303917	10304917	+	704.6999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3234.0	NM_029310	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-14592313-3	chr3	14591809	14592809	+	704.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007892, intron 3 of 7)	Lx3A|LINE|L1	13638.0	NM_007892	13559.0	Mm.153415	NM_007892	ENSMUSG00000027552	E2f5	AU024671|E2F-5	E2F transcription factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-123226476-2	chr7	123225976	123226976	+	704.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146198, intron 1 of 16)	MTD|LTR|ERVL-MaLR	11610.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139299331-2	chr5	139298831	139299831	+	704.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 3 of 10)	intron (NM_172723, intron 3 of 10)	26133.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46921770-2	chr18	46921276	46922276	+	704.666626	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_001033446)	promoter-TSS (NM_001033446)	-39.0	NM_001033446	381142.0	Mm.329423	NM_001033446	ENSMUSG00000073568	Arl14epl	Gm949	ADP-ribosylation factor-like 14 effector protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101405514-2	chr7	101405014	101406014	+	704.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 29 of 33)	intron (NM_001040111, intron 29 of 33)	11126.0	NM_198096	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20508291-2	chr13	20507786	20508786	+	704.583374	f0_balb.idr|f1_balb.idr	intron (NM_198093, intron 1 of 6)	intron (NM_198093, intron 1 of 6)	35296.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.0	4.5	2.0	2.0	16.0	3.5
Merged-chr6-134218062-3	chr6	134217571	134218571	+	704.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	-178258.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-58523958-2	chr10	58523458	58524458	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162956, intron 6 of 15)	L1MB8|LINE|L1	26021.0	NM_001162956	76138.0	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95766183-2	chr3	95765683	95766683	+	704.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081293, exon 11 of 11)	exon (NM_001081293, exon 11 of 11)	-11206.0	NR_151588	71807.0	Mm.271754	NM_027931	ENSMUSG00000028107	Tars2	2610024N01Rik|AI429208|Tarsl1|thrRS	threonyl-tRNA synthetase 2, mitochondrial (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-118846083-2	chr3	118845583	118846583	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_170778, intron 8 of 22)	intron (NM_170778, intron 8 of 22)	283903.0	NM_170778	99586.0	Mm.27907	NM_170778	ENSMUSG00000033308	Dpyd	AI315208|DHPDHase|DPD|E330028L06Rik	dihydropyrimidine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-83404561-2	chr16	83404061	83405061	+	704.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-966582.0	NR_040567	75247.0	Mm.417813	NR_040567		4930553E22Rik	-	RIKEN cDNA 4930553E22 gene	ncRNA	3.0	0.0	2.5	0.0	0.0	0.0
Merged-chr2-35676372-2	chr2	35675872	35676872	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290637, intron 3 of 16)	intron (NM_001290637, intron 3 of 16)	-15622.0	NM_001001602	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105523433-2	chr8	105522933	105523933	+	704.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008289, exon 5 of 5)	3' UTR (NM_008289, exon 5 of 5)	4687.0	NM_008289	15484.0	Mm.5079	NM_008289	ENSMUSG00000031891	Hsd11b2	11HSD2	hydroxysteroid 11-beta dehydrogenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84229942-2	chr15	84229442	84230442	+	704.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2101.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120180405-2	chr6	120179866	120180866	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-13457.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	48.0	97.0	64.5	24.5	54.0	45.5
Merged-chr3-65955268-2	chr3	65954768	65955768	+	704.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355432, exon 4 of 12)	5' UTR (NM_001355432, exon 4 of 12)	2981.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	45.5	50.0	27.5	39.5	49.5	27.5
Merged-chr15-79505257-2	chr15	79504740	79505740	+	704.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008427)	promoter-TSS (NM_008427)	1.0	NM_008427	16520.0	Mm.39759	NM_008427	ENSMUSG00000044216	Kcnj4	IRK3|Kcnf2|MB-IRK3	potassium inwardly-rectifying channel, subfamily J, member 4	protein-coding	0.0	0.0	0.0	2.0	3.0	3.0
Merged-chr9-63739923-2	chr9	63739423	63740423	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	18071.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180808158-2	chr1	180807658	180808658	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008210, intron 3 of 3)	intron (NM_008210, intron 3 of 3)	5447.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-5448383-2	chr15	5447883	5448883	+	704.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	-47935.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123112135-2	chr9	123111635	123112635	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026917, intron 1 of 6)	RLTR25B|LTR|ERVK	1070.0	NM_026917	69035.0	Mm.28300	NM_026917	ENSMUSG00000025786	Zdhhc3	1110020O22Rik|1810006O10Rik|2210017C02Rik|DHHC-3|GODZ|Gramp1|Zfp373	zinc finger, DHHC domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-89356605-2	chr16	89356105	89357105	+	704.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47169.0	NM_028621	170656.0	Mm.46109	NM_028621	ENSMUSG00000058368	Krtap21-1	1110017B05Rik|AI506979|KAP21.1|Krtap16-7	keratin associated protein 21-1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-18454303-2	chr18	18453803	18454803	+	704.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-873313.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-92823584-2	chr8	92823084	92824084	+	704.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3713.0	NM_008610	17390.0	Mm.29564	NM_008610	ENSMUSG00000031740	Mmp2	Clg4a|GelA|MMP-2	matrix metallopeptidase 2	protein-coding	4.5	2.0	6.0	4.5	1.0	8.5
Merged-chr9-21453717-2	chr9	21453217	21454217	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 1 of 19)	B2_Mm2|SINE|B2	28809.0	NM_001357719	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129809485-2	chr4	129809037	129810037	+	704.5	f0_c57.idr|f1_balb.idr	Intergenic	RSINE1|SINE|B4	-10942.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	27.0	138.0	106.0	33.5	94.5	80.5
Merged-chr15-75929201-2	chr15	75928701	75929701	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357005, intron 1 of 10)	intron (NM_001357005, intron 1 of 10)	529.0	NM_031201	22122.0	Mm.22596	NM_031201	ENSMUSG00000022570	Tsta3	AI256181|FX|Tstap35b	tissue specific transplantation antigen P35B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81284211-2	chr10	81283711	81284711	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282095, intron 1 of 20)	PB1D7|SINE|Alu	1570.0	NM_001282096	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60405682-2	chr2	60405182	60406182	+	704.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5843.0	NR_046065	100039176.0	Mm.261790	NR_046065	ENSMUSG00000087283	Gm13580	-	predicted gene 13580	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182560428-2	chr1	182559928	182560928	+	704.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4579.0	NM_001145806	170725.0	Mm.189201	NM_130890	ENSMUSG00000038599	Capn8	nCL-2|nCL-2'	calpain 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-127035007-1	chr6	127034507	127035507	+	704.5	f0_balb.idr	Intergenic	Intergenic	19465.0	NM_010204	14177.0	Mm.3403	NM_010204	ENSMUSG00000000183	Fgf6	Fgf-6|HSTF-2	fibroblast growth factor 6	protein-coding	0.5	0.5	3.0	0.0	1.5	9.0
Merged-chr11-61517092-2	chr11	61516592	61517592	+	704.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010148)	TTS (NM_010148)	11948.0	NM_001330781	27078.0	Mm.261226	NM_013717	ENSMUSG00000001039	B9d1	AW045994|B9|Eppb9	B9 protein domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-9425911-2	chr6	9425411	9426411	+	704.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	475892.0	NM_008751	18231.0	Mm.46954	NM_008751	ENSMUSG00000046178	Nxph1	C130005L03Rik	neurexophilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-92666956-6	chr7	92666489	92667489	+	704.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029078, intron 1 of 15)	intron (NM_029078, intron 1 of 15)	2923.0	NM_029078	74737.0	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	4.5	1.5	1.5	10.0	2.0	6.0
Merged-chr1-58719680-2	chr1	58719180	58720180	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	6394.0	NM_001355056	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78486983-2	chr10	78486483	78487483	+	704.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22035.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121746759-2	chr11	121746259	121747259	+	704.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44332.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-19987516-2	chr14	19987016	19988016	+	704.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10267.0	NM_001285909	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54145090-2	chr11	54144590	54145590	+	704.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44166.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149663195-2	chr4	149662696	149663696	+	704.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164052, exon 1 of 22)	exon (NM_001164052, exon 1 of 22)	120.0	NM_001164052	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	4.0	13.5	2.0	5.0	9.5	6.5
Merged-chr16-38721585-3	chr16	38721113	38722113	+	704.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8578.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117135691-2	chr11	117135191	117136191	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 2 of 16)	intron (NM_001166507, intron 2 of 16)	20519.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41506406-2	chr4	41505901	41506901	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253788, intron 4 of 5)	intron (NM_001253788, intron 4 of 5)	1363.0	NM_028624	73721.0	Mm.45614	NM_028624	ENSMUSG00000028441	1110017D15Rik	Cbe1|Smrp1	RIKEN cDNA 1110017D15 gene	protein-coding	2.0	6.0	0.0	0.0	0.0	0.0
Merged-chr9-30423212-2	chr9	30422712	30423712	+	704.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4117.0	NM_028874	102607.0	Mm.35084	NM_028874	ENSMUSG00000031993	Snx19	3526401K03Rik|AI195321|AI848208|mKIAA0254	sorting nexin 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102460015-2	chr12	102459515	102460515	+	704.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-9119.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	4.5	13.0	9.0	0.0	3.0	5.0
Merged-chr18-80713958-2	chr18	80713458	80714458	+	704.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164109)	promoter-TSS (NM_001164109)	-887.0	NM_001164110	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11355814-2	chr2	11355314	11356314	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040615, intron 1 of 2)	intron (NR_040615, intron 1 of 2)	16325.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28809602-2	chr17	28809102	28810102	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081315, intron 2 of 12)	ID_B1|SINE|B4	8476.0	NM_001081315	268936.0	Mm.291877	NM_199061	ENSMUSG00000063952	Brpf3	AI413466|AW493400|mKIAA1286	bromodomain and PHD finger containing, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79907187-2	chr10	79906687	79907687	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163276, intron 2 of 14)	intron (NM_001163276, intron 2 of 14)	1751.0	NM_001163276	216154.0	Mm.260089	NM_198107	ENSMUSG00000013833	Med16	95kDa|A630083L04|DRIP92|Thrap5|Trap95	mediator complex subunit 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91732439-2	chr12	91731939	91732939	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 3 of 6)	B3|SINE|B2	53997.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102409544-2	chr11	102409044	102410044	+	704.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2027.0	NM_026542	68066.0	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25713414-2	chr7	25712914	25713914	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028771, intron 4 of 4)	intron (NM_028771, intron 4 of 4)	5639.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54917490-2	chr18	54916990	54917990	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	72690.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93166242-5	chr10	93165761	93166761	+	704.47998	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146239, intron 1 of 16)	intron (NM_146239, intron 1 of 16)	3476.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	44.0	112.0	81.0	29.5	84.0	58.0
Merged-chr2-129307442-3	chr2	129306958	129307958	+	704.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040371, exon 5 of 5)	non-coding (NR_040371, exon 5 of 5)	2514.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73996675-3	chr13	73996181	73997181	+	704.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-12738.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118512852-3	chr9	118512343	118513343	+	704.383362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018748, intron 1 of 23)	intron (NM_018748, intron 1 of 23)	6525.0	NM_018748	54214.0	Mm.10409	NM_018748	ENSMUSG00000038708	Golga4	AI225887|AU019508|Olp-1	golgi autoantigen, golgin subfamily a, 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117145342-2	chr4	117144842	117145842	+	704.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9232.0	NR_028524	100217424.0		NR_028524	ENSMUSG00000065680	Snord38a	MBII-329	small nucleolar RNA, C/D box 38A	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30849336-2	chr5	30848836	30849836	+	704.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133350, intron 1 of 6)	intron (NM_133350, intron 1 of 6)	-12471.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34227404-2	chr6	34226904	34227904	+	704.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-50350.0	NM_021435	58246.0	Mm.245527	NM_021435	ENSMUSG00000018999	Slc35b4	4930474D06Rik|AB041549|AW494345	solute carrier family 35, member B4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-86701483-2	chr10	86700983	86701983	+	704.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011631, intron 5 of 17)	intron (NM_011631, intron 5 of 17)	3961.0	NM_011631	22027.0	Mm.87773	NM_011631	ENSMUSG00000020048	Hsp90b1	ERp99|GRP94|TA-3|Targ2|Tra-1|Tra1|endoplasmin|gp96	heat shock protein 90, beta (Grp94), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126019882-2	chr4	126019382	126020382	+	704.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4777.0	NR_045561	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66089212-2	chr9	66088712	66089712	+	704.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019727, intron 13 of 14)	intron (NM_019727, intron 13 of 14)	-19481.0	NM_001025612	382083.0	Mm.477103	NM_001025612	ENSMUSG00000039452	Snx22	Gm1120	sorting nexin 22	protein-coding	1.0	1.0	3.0	0.5	3.5	8.0
Merged-chr15-25524359-3	chr15	25523864	25524864	+	704.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98186.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166140652-3	chr2	166140169	166141169	+	704.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028072, intron 1 of 20)	intron (NM_028072, intron 1 of 20)	14616.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75148435-3	chr14	75147936	75148936	+	704.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	12011.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8468973-1	chr17	8468473	8469473	+	704.333313	f0_balb.idr	Intergenic	Intergenic	34550.0	NM_009309	20997.0	Mm.913	NM_009309	ENSMUSG00000062327	T	Bra|D17Mit170|Low|Lr|T1|Tbxt|Tl2|Tl3|cou|me75	brachyury, T-box transcription factor T	protein-coding	0.0	0.0	0.0	2.5	0.0	0.0
Merged-chr13-108316864-3	chr13	108316381	108317381	+	704.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178683, intron 1 of 10)	intron (NM_178683, intron 1 of 10)	544.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	5.0	13.0	16.5	0.0	18.5	9.0
Merged-chr8-120573365-2	chr8	120572865	120573865	+	704.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 11 of 15)	intron (NM_001145896, intron 11 of 15)	15710.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12756082-4	chr17	12755608	12756608	+	704.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010515, intron 1 of 47)	intron (NM_010515, intron 1 of 47)	13598.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-89293516-3	chr9	89293023	89294023	+	704.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	82139.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41098316-3	chr4	41097841	41098841	+	704.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016689)	promoter-TSS (NM_016689)	-158.0	NM_016689	11828.0	Mm.34043	NM_016689	ENSMUSG00000028435	Aqp3	AQP-2	aquaporin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-89973896-3	chr9	89973395	89974395	+	704.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357743, intron 8 of 26)	intron (NM_001357743, intron 8 of 26)	64120.0	NM_001357743	19417.0	Mm.44561	NM_011245	ENSMUSG00000032356	Rasgrf1	AI844718|CDC25|CDC25Mm|Gnrp|Grf1|Grfbeta|P190-A|Ras-GRF1|p190|p190RhoGEF	RAS protein-specific guanine nucleotide-releasing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171000196-2	chr1	170999696	171000696	+	704.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18730.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67831540-3	chr5	67831100	67832100	+	704.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	15831.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-69306393-4	chr10	69305876	69306876	+	704.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46536.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150438799-4	chr4	150438316	150439316	+	704.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 3 of 22)	intron (NM_001085492, intron 3 of 22)	156900.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	7.5	6.5	11.5	4.0	7.0	0.0
Merged-chr7-118305018-3	chr7	118304502	118305502	+	704.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61095.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11005200-3	chr4	11004723	11005723	+	704.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175175, intron 1 of 1)	PB1D10|SINE|Alu	2396.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	0.0	0.0	10.5	0.5	2.0	4.0
Merged-chr7-98671636-4	chr7	98671118	98672118	+	704.270874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15049.0	NM_172280	233545.0	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13661643-3	chr8	13661162	13662162	+	704.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	Lx7|LINE|L1	15925.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144166476-2	chr2	144165976	144166976	+	704.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22814.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30039780-2	chr14	30039280	30040280	+	704.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028981)	TTS (NM_028981)	17147.0	NM_175343	218865.0	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	0.0	7.0	1.5	3.0	0.0	4.0
Merged-chr2-93188614-2	chr2	93188114	93189114	+	704.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025246, intron 1 of 7)	CpG	1066.0	NM_001025246	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4930762-2	chr19	4930233	4931233	+	704.25	f0_balb.idr|f0_c57.idr	3' UTR (NM_001347422, exon 6 of 6)	3' UTR (NM_001347422, exon 6 of 6)	-2446.0	NM_133803	75221.0	Mm.234769	NM_133803	ENSMUSG00000063904	Dpp3	4930533O14Rik|C86324|DPP III	dipeptidylpeptidase 3	protein-coding	10.5	13.5	8.0	12.5	13.5	12.0
Merged-chr12-35019023-3	chr12	35018573	35019573	+	704.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28116.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	30.5	76.0	61.0	25.5	69.0	52.0
Merged-chr17-24208251-3	chr17	24207702	24208702	+	704.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_010947, exon 1 of 6)	exon (NM_010947, exon 1 of 6)	1185.0	NM_010947	18209.0	Mm.259542	NM_010947	ENSMUSG00000036473	Ntn3	Ntn2l	netrin 3	protein-coding	0.0	1.0	1.5	0.0	0.0	0.0
Merged-chr2-122161702-3	chr2	122161179	122162179	+	704.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080510, intron 1 of 6)	intron (NM_080510, intron 1 of 6)	979.0	NM_080510	70928.0	Mm.379188	NM_080510	ENSMUSG00000033368	Trim69	4921519C19Rik|Rnf36|Trif|Trimless	tripartite motif-containing 69	protein-coding	6.5	3.5	2.0	5.0	1.5	0.5
Merged-chr8-81341790-3	chr8	81341255	81342255	+	704.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001297591)	promoter-TSS (NM_001297591)	-807.0	NM_001024617	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	2.0	4.5	2.0	7.0	6.5	13.5
Merged-chr11-106026908-2	chr11	106026408	106027408	+	704.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037712, intron 11 of 12)	intron (NM_001037712, intron 11 of 12)	-9964.0	NM_027946	71833.0	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-19430105-4	chr13	19429608	19430608	+	704.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34295.0	NM_001347485	76205.0	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56758271-4	chr17	56757743	56758743	+	704.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008738)	promoter-TSS (NM_008738)	-695.0	NM_008738	18188.0	Mm.8074	NM_008738	ENSMUSG00000039481	Nrtn	NTN	neurturin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109039974-3	chr8	109039484	109040484	+	704.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35238.0	NR_126329	628686.0	Mm.203332	NR_126329	ENSMUSG00000097393	D030068K23Rik	-	RIKEN cDNA D030068K23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-94052915-3	chr4	94052417	94053417	+	704.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	503879.0	NM_026368	67770.0	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131094627-3	chr1	131094119	131095119	+	704.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	MIR3|SINE|MIR	3224.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	10.0	37.5	17.0	15.5	25.0	28.5
Merged-chr3-154817920-2	chr3	154817420	154818420	+	704.083313	f1_balb.idr|f1_c57bl6.idr	intron (NM_177066, intron 23 of 24)	intron (NM_177066, intron 23 of 24)	106787.0	NM_175176	209601.0	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170153025-3	chr2	170152529	170153529	+	704.044434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-10354.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92270656-4	chr5	92270169	92271169	+	704.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025972, intron 3 of 10)	intron (NM_025972, intron 3 of 10)	7512.0	NM_001163687	67111.0	Mm.28890	NM_025972	ENSMUSG00000029413	Naaa	2210023K21Rik|3830414F09Rik|Asahl	N-acylethanolamine acid amidase	protein-coding	4.0	14.0	2.5	0.0	6.0	9.0
Merged-chr11-94388890-3	chr11	94388375	94389375	+	704.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	4101.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95206861-3	chr4	95206374	95207374	+	704.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-154652.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17479024-3	chr10	17478472	17479472	+	704.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-244256.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138304106-1	chr4	138303606	138304606	+	704.0	f1_c57bl6.idr	promoter-TSS (NM_007838)	promoter-TSS (NM_007838)	-632.0	NM_007838	13200.0	Mm.7236	NM_007838	ENSMUSG00000028757	Ddost	-	dolichyl-di-phosphooligosaccharide-protein glycotransferase	protein-coding	2.0	59.5	19.5	22.5	17.0	17.0
Merged-chr12-71184599-2	chr12	71184099	71185099	+	704.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029818, exon 21 of 28)	exon (NM_029818, exon 21 of 28)	47751.0	NM_001163378	76967.0	Mm.87290	NM_029818	ENSMUSG00000034601	2700049A03Rik	Ta3|Talpid3|mKIAA0586	RIKEN cDNA 2700049A03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32601064-2	chr11	32600564	32601564	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 10 of 18)	(TCTG)n|Simple_repeat|Simple_repeat	-41491.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0.5	0.0	1.5	0.0	3.5	0.0
Merged-chr2-128189955-2	chr2	128189455	128190455	+	704.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62380.0	NM_001284410	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	1.5	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21011014-1	chr11	21010514	21011514	+	704.0	f0_balb.idr	Intergenic	Intergenic	-80310.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65735224-2	chr17	65734724	65735724	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	L1MA6|LINE|L1	37528.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-103828999-1	chr8	103828499	103829499	+	704.0	f1_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	225200.0	NR_045730	71058.0	Mm.67707	NR_045730	ENSMUSG00000110336	4933400L20Rik	-	RIKEN cDNA 4933400L20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-138257064-2	chr2	138256564	138257564	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025431, intron 1 of 4)	CpG	480.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95270984-2	chr11	95270484	95271484	+	704.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001195004)	TTS (NM_001195004)	9455.0	NM_053093	93670.0	Mm.40085	NM_053093	ENSMUSG00000020872	Tac4	AW489379|PPT-C	tachykinin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5645584-2	chr6	5645084	5646084	+	704.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80055.0	NM_001191023	13426.0	Mm.20893	NM_010063	ENSMUSG00000029757	Dync1i1	DH IC-1|DHIC-1|DIC|Dncic1|IC74	dynein cytoplasmic 1 intermediate chain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44181278-2	chr13	44180778	44181778	+	704.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35209.0	NR_045088	100503592.0	Mm.184925	NR_045088	ENSMUSG00000113186	A330076C08Rik	-	RIKEN cDNA A330076C08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-111280717-2	chr14	111280217	111281217	+	704.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-394398.0	NM_198865	75409.0	Mm.235097	NM_029273	ENSMUSG00000033214	Slitrk5	2610019D03Rik	SLIT and NTRK-like family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-30229133-2	chr17	30228633	30229633	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172618, intron 9 of 11)	intron (NM_172618, intron 9 of 11)	167047.0	NR_030688	623169.0	Mm.440508	NR_030688		Gm6402	EG623169	ribosomal protein S17 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-132155594-2	chr3	132155094	132156094	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020265, intron 1 of 3)	intron (NM_020265, intron 1 of 3)	70302.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-84993834-2	chr11	84993382	84994382	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029934, intron 30 of 33)	RMER6A|LTR|ERVK	36128.0	NM_007607	12351.0	Mm.1641	NM_007607	ENSMUSG00000000805	Car4	AW456718|Ca4	carbonic anhydrase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-84315669-3	chr6	84315155	84316155	+	704.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108183.0	NR_046063	100038556.0	Mm.387783	NR_046063	ENSMUSG00000107797	Gm10445	-	predicted gene 10445	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-101746463-1	chr2	101745963	101746963	+	704.0	f1_balb.idr	intron (NM_001355625, intron 5 of 8)	intron (NM_001355625, intron 5 of 8)	51244.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	0.0	3.5	3.0	0.0	9.5	0.0
Merged-chr8-123067088-2	chr8	123066588	123067588	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153176, intron 2 of 16)	PB1D11|SINE|Alu	1580.0	NM_153176	234847.0	Mm.292075	NM_153176	ENSMUSG00000000738	Spg7	AI452278|AU015315|Cmar|PGN	SPG7, paraplegin matrix AAA peptidase subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7762113-2	chr9	7761613	7762613	+	704.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR9F|LTR|ERVK	-1964.0	NM_133739	71929.0	Mm.283293	NM_133739	ENSMUSG00000050912	Tmem123	2310075C12Rik	transmembrane protein 123	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84642754-1	chr8	84642254	84643254	+	704.0	f1_balb.idr	Intergenic	Intergenic	20098.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.0	0.0	3.0	8.0	0.5	5.0
Merged-chr2-165075107-3	chr2	165074611	165075611	+	704.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15639.0	NR_033448	72211.0	Mm.482899	NR_033448	ENSMUSG00000078935	1700025C18Rik	-	RIKEN cDNA 1700025C18 gene	ncRNA	3.5	3.0	0.0	2.0	0.0	4.0
Merged-chr1-4967195-1	chr1	4966695	4967695	+	704.0	f0_balb.idr	intron (NM_001177795, intron 2 of 5)	intron (NM_001177795, intron 2 of 5)	51539.0	NM_001290372	58175.0	Mm.103771	NM_021374	ENSMUSG00000002459	Rgs20	2900073E09Rik|Rgsz1	regulator of G-protein signaling 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5443748-1	chr13	5443248	5444248	+	704.0	f0_balb.idr	Intergenic	Intergenic	414344.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-83167747-2	chr10	83167247	83168247	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021439, intron 2 of 2)	intron (NM_021439, intron 2 of 2)	170070.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16405241-2	chr7	16404741	16405741	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198631, intron 1 of 13)	intron (NM_198631, intron 1 of 13)	4045.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32916188-2	chr2	32915688	32916688	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146119, intron 5 of 13)	(GGGA)n|Simple_repeat|Simple_repeat	40054.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89280141-1	chr3	89279641	89280641	+	704.0	f0_balb.idr	promoter-TSS (NM_010107)	promoter-TSS (NM_010107)	-496.0	NM_010107	13636.0	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-72157889-2	chr16	72157389	72158389	+	704.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6C|LTR|ERVK	76438.0	NR_131116	319533.0	Mm.373754	NR_131115		8030451O07Rik	-	RIKEN cDNA 8030451O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr16-91447250-2	chr16	91446750	91447750	+	704.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17854.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-83526041-2	chr14	83525541	83526541	+	704.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	549249.0	NR_153783	102635012.0	Mm.399509	NR_153783	ENSMUSG00000115043	Gm32455	-	predicted gene, 32455	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77795309-3	chr11	77794791	77795791	+	704.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011586, intron 1 of 39)	intron (NM_011586, intron 1 of 39)	-6007.0	NM_001291214	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-5528129-2	chr8	5527629	5528629	+	704.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-422842.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78435426-2	chr10	78434926	78435926	+	704.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105837)	TTS (NR_105837)	627.0	NR_105837	102465221.0		NR_105837	ENSMUSG00000098932	Mir6410	Gm27916|mmu-mir-6410	microRNA 6410	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-68744515-1	chr3	68744015	68745015	+	704.0	f0_balb.idr	Intergenic	Intergenic	-16980.0	NR_153374	102639225.0	Mm.109095	NR_153374	ENSMUSG00000102936	Gm35584	-	predicted gene, 35584	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96717926-2	chr9	96717426	96718426	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359959, intron 2 of 2)	intron (NM_001359959, intron 2 of 2)	1519.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55581321-2	chr14	55580821	55581821	+	704.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_033146)	TTS (NM_033146)	2827.0	NM_011189	19186.0	Mm.830	NM_011189	ENSMUSG00000022216	Psme1	AW413925|PA28a	proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171620368-2	chr1	171619868	171620868	+	704.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12958.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-103367262-1	chr6	103366762	103367762	+	704.0	f0_balb.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-143614.0	NM_007697	12661.0	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-94269179-1	chr1	94268679	94269679	+	704.0	f1_balb.idr	Intergenic	Intergenic	-216626.0	NM_008798	18566.0	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding	12.5	0.0	1.5	4.5	0.0	0.0
Merged-chr11-70826433-2	chr11	70825933	70826933	+	704.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-13872.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	0.0	2.5	2.5	1.5	3.0	0.5
Merged-chr2-127430526-2	chr2	127430026	127431026	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081089, intron 6 of 21)	intron (NM_001081089, intron 6 of 21)	5327.0	NM_001081089	215456.0	Mm.440454	NM_001081089	ENSMUSG00000046338	Gpat2	A530057A03Rik|Gm116|xGPAT1	glycerol-3-phosphate acyltransferase 2, mitochondrial	protein-coding	3.0	11.0	4.5	2.0	0.5	1.0
Merged-chr12-54710708-1	chr12	54710208	54711208	+	704.0	f0_balb.idr	Intergenic	Intergenic	-14814.0	NM_025456	66266.0	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88690508-1	chr8	88690008	88691008	+	704.0	f1_balb.idr	Intergenic	L2|LINE|L2	-6520.0	NM_001128170	74256.0	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	3.5	1.0	0.0	0.0	0.0	0.0
Merged-chr5-72553223-2	chr5	72552723	72553723	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153351, intron 3 of 21)	intron (NR_153351, intron 3 of 21)	6422.0	NM_001359837	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-135241943-1	chr6	135241443	135242443	+	704.0	f1_balb.idr	intron (NM_001080552, intron 3 of 5)	intron (NM_001080552, intron 3 of 5)	5941.0	NM_001080552	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32005069-2	chr16	32004569	32005569	+	704.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1782.0	NM_177103	320213.0	Mm.152890	NM_023801	ENSMUSG00000022772	Senp5	6230429P13Rik|A730063F07Rik|AI851888|BB189556|SMT3IP3	SUMO/sentrin specific peptidase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-42608486-1	chr16	42607986	42608986	+	704.0	f0_balb.idr	Intergenic	Intergenic	267101.0	NR_040521	75722.0	Mm.243747	NR_040521	ENSMUSG00000075070	4932412D23Rik	Gm10809	RIKEN cDNA 4932412D23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43444092-2	chr4	43443592	43444592	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011571, intron 3 of 9)	intron (NM_011571, intron 3 of 9)	1815.0	NM_011571	21754.0	Mm.485441	NM_011571	ENSMUSG00000028458	Tesk1	AI326901	testis specific protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-78301546-1	chr16	78301046	78302046	+	704.0	f0_balb.idr	promoter-TSS (NM_001276263)	promoter-TSS (NM_001276263)	-125.0	NM_009988	13052.0	Mm.66222	NM_009988	ENSMUSG00000022865	Cxadr	2610206D03Rik|AU016810|AW553441|CAR|MCAR|MCVADR	coxsackie virus and adenovirus receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105274088-2	chr4	105273588	105274588	+	704.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116741.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27564211-1	chr17	27563711	27564711	+	704.0	f1_balb.idr	TTS (NM_001166536)	TTS (NM_001166536)	1516.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	0.0	0.5	1.0	8.5	8.0	1.0
Merged-chr5-12242375-2	chr5	12241875	12242875	+	704.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140791.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7225545-2	chr19	7225045	7226045	+	704.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027643)	TTS (NM_027643)	-7929.0	NM_007750	12868.0	Mm.14022	NM_007750	ENSMUSG00000035885	Cox8a	COX8L	cytochrome c oxidase subunit VIIIa	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-3457679-2	chr6	3457179	3458179	+	704.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178899, exon 10 of 10)	3' UTR (NM_178899, exon 10 of 10)	36819.0	NM_178899	101202.0	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132622285-2	chr7	132621785	132622785	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 1 of 6)	intron (NM_029609, intron 1 of 6)	11642.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101167215-2	chr4	101166715	101167715	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 11 of 24)	intron (NM_146145, intron 11 of 24)	98067.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-56982348-1	chr1	56981848	56982848	+	704.0	f1_c57bl6.idr	Intergenic	Intergenic	-2100.0	NM_001358580	212712.0	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding	2.0	0.0	0.0	1.5	0.0	0.0
Merged-chr4-156196777-1	chr4	156196277	156197277	+	704.0	f0_balb.idr	intron (NM_021604, intron 1 of 35)	CpG	711.0	NM_021604	11603.0	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	1.0	0.0	0.0	7.5	0.0	0.0
Merged-chr15-78249933-2	chr15	78249433	78250433	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008677, intron 1 of 9)	ORR1F|LTR|ERVL-MaLR	5122.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	2.0	5.5	1.5	3.0	17.0	7.0
Merged-chr14-55579112-2	chr14	55578612	55579612	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011189, intron 1 of 10)	intron (NM_011189, intron 1 of 10)	618.0	NM_011189	19186.0	Mm.830	NM_011189	ENSMUSG00000022216	Psme1	AW413925|PA28a	proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70439391-2	chr11	70438891	70439891	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145429, intron 11 of 14)	intron (NM_145429, intron 11 of 14)	1136.0	NR_106064	102465670.0		NR_106064	ENSMUSG00000099109	Mir7115	Gm27902|mmu-mir-7115	microRNA 7115	ncRNA	0.5	7.5	3.5	1.5	6.0	1.0
Merged-chr4-59043191-3	chr4	59042670	59043670	+	703.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8014.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	4.5	2.0	3.5	13.5	13.0	10.0
Merged-chr16-5255229-3	chr16	5254739	5255739	+	703.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027446, intron 1 of 7)	intron (NM_027446, intron 1 of 7)	717.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111326252-3	chr12	111325754	111326754	+	703.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183016, intron 7 of 36)	intron (NM_183016, intron 7 of 36)	51464.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67972748-3	chr5	67972245	67973245	+	703.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256184, intron 2 of 3)	intron (NM_001256184, intron 2 of 3)	-29664.0	NR_038182	73865.0	Mm.66946	NR_038182	ENSMUSG00000106880	4930425K10Rik	-	RIKEN cDNA 4930425K10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133197065-3	chr4	133196577	133197577	+	703.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153423, exon 9 of 9)	3' UTR (NM_153423, exon 9 of 9)	1422.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	2.5	2.5	2.5	0.0	17.5	5.5
Merged-chr15-57906004-4	chr15	57905494	57906494	+	703.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6205.0	NM_001081396	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-51546294-4	chr6	51545817	51546817	+	703.854187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361577, intron 1 of 6)	intron (NM_001361577, intron 1 of 6)	1024.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-4096492-3	chr10	4096009	4097009	+	703.849976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 24 of 27)	ID4|SINE|ID	116611.0	NR_152620	102632515.0	Mm.416995	NR_152620	ENSMUSG00000111266	Gm30570	-	predicted gene, 30570	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25488514-2	chr14	25488014	25489014	+	703.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	29329.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	5.5	1.0	0.0	0.0	1.0
Merged-chr9-110229775-2	chr9	110229275	110230275	+	703.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009211, intron 26 of 27)	intron (NM_009211, intron 26 of 27)	-14008.0	NM_001166273	29873.0	Mm.38496	NM_013884	ENSMUSG00000032482	Cspg5	Caleb|Ngc	chondroitin sulfate proteoglycan 5	protein-coding	0.0	0.5	0.5	0.0	0.5	0.5
Merged-chr14-31830000-2	chr14	31829500	31830500	+	703.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024604, intron 1 of 27)	CpG	415.0	NM_001024604	105522.0	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82915153-3	chr11	82914651	82915651	+	703.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178680, intron 5 of 19)	intron (NM_178680, intron 5 of 19)	3898.0	NM_178680	217012.0	Mm.295205	NM_178680	ENSMUSG00000018845	Unc45b	AA445617|Cmya4|D230041A13Rik|Unc45	unc-45 myosin chaperone B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103865868-3	chr2	103865377	103866377	+	703.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-35074.0	NR_131913	100996933.0	Mm.394449	NR_131913		Lincred1	-	long intergenic non-protein coding RNA of erythroid differentiation 1	ncRNA	0.0	0.0	1.5	0.0	1.5	2.0
Merged-chr11-40857680-4	chr11	40857154	40858154	+	703.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-102368.0	NM_009831	12450.0	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	0.0	1.5	1.0	0.0	0.0	3.0
Merged-chr19-37698904-3	chr19	37698401	37699401	+	703.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007811, exon 3 of 7)	exon (NM_007811, exon 3 of 7)	1093.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99229843-2	chr7	99229343	99230343	+	703.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_177448, intron 2 of 5)	intron (NM_177448, intron 2 of 5)	8768.0	NM_177448	233549.0	Mm.208030	NM_177448	ENSMUSG00000052396	Mogat2	DGAT2L5|MGAT2|Mgat1l	monoacylglycerol O-acyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36952777-2	chr17	36952277	36953277	+	703.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029632)	promoter-TSS (NM_029632)	-985.0	NM_029632	76497.0	Mm.46176	NM_029632	ENSMUSG00000036398	Ppp1r11	1500041B02Rik|AV117883|Hcgv|Tcte5|Tctex-5|Tctex5	protein phosphatase 1, regulatory (inhibitor) subunit 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172012250-2	chr1	172011802	172012802	+	703.75	f0_balb.idr|f1_c57bl6.idr	intron (NM_033509, intron 3 of 7)	intron (NM_033509, intron 3 of 7)	14993.0	NM_033509	93840.0	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	VANGL planar cell polarity 2	protein-coding	0.0	4.0	0.5	1.0	1.0	0.0
Merged-chr10-94317934-4	chr10	94317428	94318428	+	703.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	Lx2|LINE|L1	5979.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	5.0	2.5	2.5	2.0	2.0	2.5
Merged-chr12-40478174-4	chr12	40477683	40478683	+	703.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	32130.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44679421-1	chr13	44678921	44679921	+	703.666687	f0_balb.idr	Intergenic	RLTR45|LTR|ERVK	-51353.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84411468-1	chr10	84410968	84411968	+	703.666687	f0_balb.idr	intron (NM_001004363, intron 1 of 6)	intron (NM_001004363, intron 1 of 6)	29003.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-20935589-2	chr5	20935089	20936089	+	703.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080977, intron 1 of 7)	RMER10A|LTR|ERVL	-15400.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116669486-3	chr4	116668987	116669987	+	703.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-16112.0	NM_011034	18477.0	Mm.30929	NM_011034	ENSMUSG00000028691	Prdx1	MSP23|NkefA|OSF-3|OSF3|PAG|Paga|PrdxI|PrxI|TDX2|TPxA|Tdpx2|prx1	peroxiredoxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7254865-3	chr9	7254334	7255334	+	703.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-17680.0	NM_008607	17386.0	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94549969-3	chr16	94549477	94550477	+	703.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20229.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-98591228-3	chr1	98590718	98591718	+	703.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAP1-MM_I-int|LTR|ERVK	170094.0	NM_027584	70866.0	Mm.389164	NM_027584	ENSMUSG00000026336	Slco6d1	4921511I05Rik	solute carrier organic anion transporter family, member 6d1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71602499-2	chr8	71602027	71603027	+	703.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166213, intron 6 of 14)	CpG-14169	4881.0	NM_001166213	100037278.0	Mm.482159	NM_001166213	ENSMUSG00000043243	Fam129c	Bcnp1	family with sequence similarity 129, member C	protein-coding	1.5	10.5	4.0	1.5	0.0	0.0
Merged-chr5-65157029-2	chr5	65156529	65157529	+	703.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175174, intron 6 of 10)	B3|SINE|B2	25798.0	NM_175174	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46266083-2	chr11	46265583	46266583	+	703.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252459, intron 12 of 30)	L1MB7|LINE|L1	30526.0	NM_177075	320116.0	Mm.39600	NM_177075	ENSMUSG00000048721	Fndc9	C030019I05Rik	fibronectin type III domain containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76397799-2	chr11	76397299	76398299	+	703.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008750, intron 1 of 7)	intron (NM_008750, intron 1 of 7)	1342.0	NM_008750	18230.0	Mm.27915	NM_008750	ENSMUSG00000020844	Nxn	l11Jus13	nucleoredoxin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71548741-2	chr17	71548241	71549241	+	703.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3320.0	NM_001142631	70891.0	Mm.477599	NM_029254	ENSMUSG00000052525	Spdya	4921517J08Rik|4930548B21Rik|GS4|MLZ-465|Spdy1	speedy/RINGO cell cycle regulator family, member A	protein-coding	0.0	0.0	3.0	0.0	5.5	0.0
Merged-chr2-90569370-2	chr2	90568891	90569891	+	703.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	11256.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	5.0	4.0	0.0	6.0	7.0
Merged-chr9-116146643-3	chr9	116146191	116147191	+	703.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	28672.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	57.0	111.0	114.5	120.0	207.0	166.0
Merged-chr1-55792965-3	chr1	55792448	55793448	+	703.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138293.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	0.0	1.0	0.0	0.0	1.0	0.0
Merged-chr1-180885871-3	chr1	180885372	180886372	+	703.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7236.0	NM_177099	320202.0	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21032735-3	chr19	21032186	21033186	+	703.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72024.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	40.5	79.0	59.0	35.0	69.5	60.5
Merged-chr5-20940490-2	chr5	20939990	20940990	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080977, intron 1 of 7)	intron (NM_001080977, intron 1 of 7)	-10499.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115503126-2	chr11	115502626	115503626	+	703.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008258, exon 2 of 5)	exon (NM_008258, exon 2 of 5)	11267.0	NM_008258	15374.0	Mm.1775	NM_008258	ENSMUSG00000020737	Jpt1	Hn1	Jupiter microtubule associated homolog 1	protein-coding	0.5	7.0	0.0	0.5	11.0	0.0
Merged-chr14-25521041-2	chr14	25520541	25521541	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 2 of 23)	intron (NM_183208, intron 2 of 23)	-13398.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78543696-2	chr9	78543196	78544196	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172773, intron 9 of 10)	intron (NM_172773, intron 9 of 10)	44349.0	NM_172773	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27491899-2	chr7	27491399	27492399	+	703.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4946.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182354748-2	chr1	182354248	182355248	+	703.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-13142.0	NM_175127	67948.0	Mm.30737	NM_175127	ENSMUSG00000047539	Fbxo28	4833428J17Rik|5730505P19Rik|D1Ertd578e|Fbx28|mKIAA0483	F-box protein 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-3259955-2	chr9	3259455	3260455	+	703.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60142.0	NR_027988	114673.0	Mm.422774	NM_053265	ENSMUSG00000042360	4930433N12Rik	-	RIKEN cDNA 4930433N12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-90634674-2	chr17	90634174	90635174	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346957, intron 7 of 18)	Lx5|LINE|L1	158802.0	NR_136930	102634634.0		NR_136930		Gm20491	-	enolase 1, alpha non-neuron pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44172034-2	chr16	44171534	44172534	+	703.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1363.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180332526-2	chr1	180332026	180333026	+	703.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081175, exon 2 of 8)	exon (NM_001081175, exon 2 of 8)	-1977.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-19225973-2	chr5	19225473	19226473	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_102342, intron 1 of 2)	intron (NR_102342, intron 1 of 2)	582.0	NR_102341	70832.0	Mm.398993	NR_102341	ENSMUSG00000097626	4921504A21Rik	-	RIKEN cDNA 4921504A21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71252050-1	chr17	71251550	71252550	+	703.5	f1_balb.idr	TTS (NM_001357336)	TTS (NM_001357336)	47396.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	11.5	10.0	6.5	10.0	32.0	32.5
Merged-chr13-34075491-2	chr13	34074991	34075991	+	703.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009450, exon 4 of 4)	exon (NM_009450, exon 4 of 4)	2517.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98347862-2	chr12	98347362	98348362	+	703.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79227.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108092814-2	chr9	108092314	108093314	+	703.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_146226, exon 5 of 22)	exon (NM_146226, exon 5 of 22)	1666.0	NM_146226	235606.0	Mm.219639	NM_146226	ENSMUSG00000032590	Apeh	-	acylpeptide hydrolase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152404983-3	chr3	152404488	152405488	+	703.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287139, intron 1 of 13)	intron (NM_001287139, intron 1 of 13)	8304.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	3.0	6.0	3.5	6.5	1.0	5.5
Merged-chr2-141898306-2	chr2	141897806	141898806	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 8 of 18)	intron (NM_001013802, intron 8 of 18)	1003158.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34935174-2	chr18	34934674	34935674	+	703.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3171.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-50126994-2	chr18	50126461	50127461	+	703.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1240.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	1.5	1.0	2.0	0.5	0.0	2.0
Merged-chr7-83394341-2	chr7	83393841	83394841	+	703.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-190590.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-86987264-2	chr10	86986764	86987764	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 3 of 68)	intron (NM_138673, intron 3 of 68)	20678.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40137846-2	chr10	40137346	40138346	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	4408.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11069112-2	chr16	11068612	11069612	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009223, intron 1 of 1)	intron (NM_009223, intron 1 of 1)	2814.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5730075-2	chr11	5729575	5730575	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077661, intron 1 of 5)	L1MC4|LINE|L1	11101.0	NM_001361590	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	18.5	9.5	11.5	6.5	19.5	13.0
Merged-chr2-4456742-2	chr2	4456242	4457242	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	B4A|SINE|B4	55766.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-49430020-2	chr17	49429520	49430520	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020042, intron 1 of 10)	intron (NM_020042, intron 1 of 10)	1656.0	NM_020042	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111168546-2	chr12	111168046	111169046	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286122, intron 1 of 9)	RMER2|LTR|ERV1	2176.0	NM_011632	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110663119-2	chr12	110662619	110663619	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030238, intron 70 of 76)	intron (NM_030238, intron 70 of 76)	19500.0	NM_025488	66323.0	Mm.273316	NM_025488	ENSMUSG00000056508	1700001K19Rik	-	RIKEN cDNA 1700001K19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6602948-2	chr11	6602448	6603448	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081652, intron 1 of 7)	intron (NM_001081652, intron 1 of 7)	3106.0	NM_001081652	192950.0	Mm.337771	NM_001081652	ENSMUSG00000041073	Nacad	D230024G13Rik|mKIAA0363	NAC alpha domain containing	protein-coding	0.0	0.0	0.0	0.0	6.0	0.0
Merged-chr10-127509882-2	chr10	127509382	127510382	+	703.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5057.0	NM_001098789	407790.0	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55086173-2	chr1	55085673	55086673	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356512, intron 2 of 11)	B2_Mm1t|SINE|B2	1759.0	NM_010477	15510.0	Mm.1777	NM_010477	ENSMUSG00000025980	Hspd1	60kDa|CPN60|HSP-60|HSP-65|Hsp60	heat shock protein 1 (chaperonin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113612134-2	chr13	113611634	113612634	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	6430.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76473740-2	chr15	76473216	76474216	+	703.5	f0_c57.idr|f1_c57bl6.idr	intron (NM_013481, intron 2 of 15)	intron (NM_013481, intron 2 of 15)	3553.0	NM_013481	12181.0	Mm.4283	NM_013481	ENSMUSG00000022557	Bop1	AU020183|AW146150|D18861|Erb1p|Kiaa0124|mKIAA0124	block of proliferation 1	protein-coding	2.0	0.0	2.0	1.5	0.0	2.5
Merged-chr9-14739637-2	chr9	14739137	14740137	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177905, intron 1 of 18)	intron (NM_177905, intron 1 of 18)	1096.0	NM_177905	330890.0	Mm.334969	NM_177905	ENSMUSG00000036912	Piwil4	9230101H05Rik|Miwi2	piwi-like RNA-mediated gene silencing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74942786-2	chr11	74942286	74943286	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 6 of 18)	ID_B1|SINE|B4	16914.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-19706668-2	chr4	19706168	19707168	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_074090, intron 1 of 24)	intron (NR_074090, intron 1 of 24)	2336.0	NM_177327	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-38478757-1	chr4	38478257	38479257	+	703.5	f0_balb.idr	Intergenic	Intergenic	376726.0	NR_151606	102636968.0	Mm.136083	NR_151606	ENSMUSG00000085632	Gm12381	-	predicted gene 12381	ncRNA	0.0	0.0	0.0	2.0	2.0	0.0
Merged-chr1-74772388-2	chr1	74771888	74772888	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009526, intron 1 of 3)	intron (NM_009526, intron 1 of 3)	496.0	NM_009526	22420.0	Mm.268282	NM_009526	ENSMUSG00000033227	Wnt6	AA409270|Wnt-6	wingless-type MMTV integration site family, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-66881930-4	chr10	66881406	66882406	+	703.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38478.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-15749419-2	chr15	15748919	15749919	+	703.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-1028682.0	NM_009869	12565.0	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52954135-2	chr2	52953635	52954635	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	96267.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-104572317-2	chr5	104571803	104572803	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346672, intron 1 of 3)	intron (NM_001346672, intron 1 of 3)	631.0	NM_001346671	69623.0	Mm.69919	NM_027142		Zfp33b	2310012P17Rik	zinc finger protein 33B	protein-coding	28.0	58.5	51.0	8.5	16.5	15.0
Merged-chr2-132590262-2	chr2	132589762	132590762	+	703.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7934.0	NR_033468	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-93520574-2	chr3	93520074	93521074	+	703.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016740)	promoter-TSS (NM_016740)	78.0	NM_016740	20195.0	Mm.280038	NM_016740	ENSMUSG00000027907	S100a11	EMAPI|Emap1|S100a14|S100c|cal	S100 calcium binding protein A11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35237648-2	chr17	35237148	35238148	+	703.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347351, exon 4 of 4)	exon (NM_001347351, exon 4 of 4)	1052.0	NM_023179	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	2.0	2.5	7.0	0.0	0.0	3.0
Merged-chr14-121928573-3	chr14	121928069	121929069	+	703.5	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_026861, intron 4 of 8)	intron (NM_026861, intron 4 of 8)	-12795.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	38.0	67.5	49.5	21.5	89.5	58.5
Merged-chr8-70787965-2	chr8	70787465	70788465	+	703.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_199308, exon 8 of 26)	exon (NM_199308, exon 8 of 26)	4468.0	NM_199308	546071.0	Mm.250731	NM_199308	ENSMUSG00000031833	Mast3	BC024265|mKIAA0561	microtubule associated serine/threonine kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr1-86396143-2	chr1	86395643	86396643	+	703.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6782.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94695974-2	chr16	94695474	94696474	+	703.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347731)	TTS (NM_001347731)	84555.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134793103-2	chr4	134792603	134793603	+	703.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-25099.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27230928-2	chr7	27230428	27231428	+	703.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-2085.0	NM_133770	76889.0	Mm.124728	NM_133770	ENSMUSG00000003762	Coq8b	0610012P18Rik|Adck4	coenzyme Q8B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-48830495-3	chr6	48830042	48831042	+	703.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10446.0	NM_023056	65963.0	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3697426-3	chr4	3697022	3698022	+	703.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	(TCTCCC)n|Simple_repeat|Simple_repeat	-17442.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90259535-3	chr9	90259040	90260040	+	703.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	11229.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74134084-4	chr1	74133590	74134590	+	703.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034060, intron 8 of 11)	intron (NM_001034060, intron 8 of 11)	8549.0	NM_001034060	435626.0	Mm.240447	NM_001034060	ENSMUSG00000061815	Rufy4	F930048N03Rik	RUN and FYVE domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95697353-2	chr8	95696853	95697853	+	703.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5684.0	NM_001195006	234593.0	Mm.29846	NM_145602	ENSMUSG00000036564	Ndrg4	D8Bwg1337e|Ndr1-rs|Ndr4|R74996|SMAP-8	N-myc downstream regulated gene 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14646143-2	chr8	14645643	14646643	+	703.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-242393.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.0	0.0	1.0	0.0	0.0	2.0
Merged-chr7-35043068-2	chr7	35042568	35043568	+	703.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 13 of 14)	intron (NM_008820, intron 13 of 14)	13498.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70314020-2	chr11	70313520	70314520	+	703.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	8510.0	NM_145684	11685.0	Mm.274093	NM_145684	ENSMUSG00000018907	Alox12e	12-LOX|8-LOX|AW259591|Alox12-ps1|Alox12-ps2|Aloxe|e-LOX1	arachidonate lipoxygenase, epidermal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-15949421-2	chr7	15948921	15949921	+	703.375	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153068, exon 6 of 6)	3' UTR (NM_153068, exon 6 of 6)	-3313.0	NM_133831	68077.0	Mm.277634	NM_133831	ENSMUSG00000041560	Nop53	5330430H08Rik|9430097C02Rik|AU041936|AW536441|Gltscr2|PICT-1|R74911	NOP53 ribosome biogenesis factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61037820-2	chr14	61037333	61038333	+	703.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013869, intron 1 of 9)	CpG	154.0	NM_001164155	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	1.0	0.0	0.0	1.0	0.0	1.0
Merged-chr18-46595867-3	chr18	46595393	46596393	+	703.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025698, intron 1 of 2)	intron (NM_025698, intron 1 of 2)	1642.0	NM_025698	66676.0	Mm.296043	NM_025698	ENSMUSG00000033184	Tmed7	3930401E15Rik|5830493P14Rik|AU044611|AW545765|TRAM	transmembrane p24 trafficking protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12036341-3	chr17	12035841	12036841	+	703.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016694, intron 10 of 11)	intron (NM_016694, intron 10 of 11)	-82943.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	3.5	0.5	6.5	0.0	2.0	0.0
Merged-chr7-68127400-3	chr7	68126908	68127908	+	703.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	136825.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-55307756-1	chr9	55307256	55308256	+	703.333313	f0_balb.idr	Intergenic	B3|SINE|B2	-19157.0	NM_172923	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117543131-3	chr8	117542633	117543633	+	703.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 2 of 32)	intron (NM_172285, intron 2 of 32)	44858.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27702667-3	chr17	27702192	27703192	+	703.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286743, intron 2 of 9)	CpG	17453.0	NM_178365	23969.0	Mm.4926	NM_011861	ENSMUSG00000040276	Pacsin1	A830061D09Rik|H74|mKIAA1379|syndapin	protein kinase C and casein kinase substrate in neurons 1	protein-coding	0.0	1.5	2.0	0.0	1.5	1.0
Merged-chr7-49069886-2	chr7	49069386	49070386	+	703.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	92272.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116649543-3	chr3	116649049	116650049	+	703.333313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_008246, intron 2 of 11)	intron (NM_008246, intron 2 of 11)	13128.0	NM_008246	15247.0	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	65.5	118.5	108.0	31.5	110.0	99.5
Merged-chr16-52451838-3	chr16	52451322	52452322	+	703.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009655, intron 1 of 15)	intron (NM_009655, intron 1 of 15)	1259.0	NM_009655	11658.0	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-71959708-1	chr9	71959208	71960208	+	703.333313	f0_balb.idr	intron (NM_011544, intron 5 of 20)	intron (NM_011544, intron 5 of 20)	-63612.0	NM_001253863	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-67069971-4	chr6	67069502	67070502	+	703.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040278, intron 4 of 6)	intron (NR_040278, intron 4 of 6)	-32595.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-35839253-3	chr11	35838797	35839797	+	703.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170779, intron 22 of 22)	intron (NM_170779, intron 22 of 22)	-4769.0	NM_025936	104458.0	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143024513-4	chr7	143023979	143024979	+	703.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110354, intron 4 of 4)	Lx7|LINE|L1	18820.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	20.0	36.0	32.0	43.5	28.0	18.5
Merged-chr7-126784602-2	chr7	126784102	126785102	+	703.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_011538, exon 6 of 8)	exon (NM_011538, exon 6 of 8)	3119.0	NM_011538	21389.0	Mm.727	NM_011538	ENSMUSG00000030699	Tbx6	rv	T-box 6	protein-coding	0.0	0.0	0.0	0.0	1.0	0.5
Merged-chr11-94379689-2	chr11	94379189	94380189	+	703.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	13287.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0.0	0.0	2.5	5.0	4.5	5.0
Merged-chr14-13959439-2	chr14	13958939	13959939	+	703.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359900, intron 1 of 8)	intron (NM_001359900, intron 1 of 8)	1874.0	NM_001285780	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25088527-2	chr8	25088027	25089027	+	703.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 1 of 11)	intron (NM_031257, intron 1 of 11)	13284.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83725715-2	chr8	83725276	83726276	+	703.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 13 of 19)	intron (NM_011925, intron 13 of 19)	-1792.0	NR_106188	102465897.0		NR_106188	ENSMUSG00000098465	Mir1668	Gm27590|mmu-mir-1668	microRNA 1668	ncRNA	5.5	11.5	4.0	7.0	4.0	9.0
Merged-chr10-120120512-2	chr10	120120012	120121012	+	703.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7547.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	2.0	1.5	2.5	0.0	0.0	0.0
Merged-chr4-46574322-3	chr4	46573845	46574845	+	703.222229	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 1 of 11)	intron (NM_001164804, intron 1 of 11)	-7905.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	8.0	22.5	36.5	24.5	28.5	29.5
Merged-chr16-3237025-2	chr16	3236701	3237701	+	703.200012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-355197.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42299613-3	chr10	42299111	42300111	+	703.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD|LINE|L1	-22869.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-38765391-3	chr12	38764934	38765934	+	703.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14648.0	NM_001347379	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167069895-2	chr2	167069395	167070395	+	703.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	YREP_Mm|Unknown|Unknown	4602.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-77141786-2	chr14	77141276	77142276	+	703.166626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-14987.0	NM_001253759	239188.0	Mm.441158	NM_172813	ENSMUSG00000022012	Enox1	B230207J08|D230005D02Rik	ecto-NOX disulfide-thiol exchanger 1	protein-coding	2.5	3.0	0.5	5.0	0.0	1.0
Merged-chr10-69919032-2	chr10	69918532	69919532	+	703.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_170689, intron 23 of 41)	RSINE1|SINE|B4	-6500.0	NM_170687	11735.0	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23886873-5	chr18	23886299	23887299	+	703.133301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 7 of 7)	intron (NM_001162941, intron 7 of 7)	-67889.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129298501-4	chr2	129298089	129299089	+	703.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040371, intron 1 of 4)	RMER15|LTR|ERVL	1219.0	NR_040371	100503468.0	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	-	predicted gene 14023	ncRNA	21.5	65.0	42.0	22.0	43.0	21.5
Merged-chr3-89391167-3	chr3	89390639	89391639	+	703.1190190000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040403)	promoter-TSS (NR_040403)	-725.0	NR_040403	545539.0	Mm.393389	NR_040403	ENSMUSG00000074466	Gm15417	-	predicted gene 15417	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-117190628-3	chr6	117190123	117191123	+	703.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22088.0	NM_021704	20315.0	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-47068464-2	chr11	47067945	47068945	+	703.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 6 of 7)	intron (NM_011891, intron 6 of 7)	257646.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	10.5	13.5	0.5	15.5	38.5	10.0
Merged-chr1-153498290-2	chr1	153497790	153498790	+	703.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10630.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93641219-5	chr10	93640719	93641719	+	703.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021320, exon 1 of 10)	5' UTR (NM_021320, exon 1 of 10)	170.0	NM_021320	57764.0	Mm.483868	NM_021320	ENSMUSG00000020019	Ntn4	-	netrin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47250037-3	chr14	47249537	47250537	+	703.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360532, intron 17 of 24)	intron (NM_001360532, intron 17 of 24)	26820.0	NM_001360532	218973.0	Mm.265615	NM_172598	ENSMUSG00000037572	Wdhd1	A630092E18|AND-1|D630024B06Rik	WD repeat and HMG-box DNA binding protein 1	protein-coding	3.5	2.0	0.5	1.0	2.5	3.5
Merged-chr5-124352410-3	chr5	124351926	124352926	+	703.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013812, intron 1 of 3)	intron (NM_013812, intron 1 of 3)	2202.0	NM_013812	13445.0	Mm.391838	NM_013812	ENSMUSG00000029394	Cdk2ap1	Apc10|Cdkap1|DORC1|Doc1|ST19|doc-1|p12	CDK2 (cyclin-dependent kinase 2)-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-4120232-1	chr10	4119732	4120732	+	703.0	f1_balb.idr	intron (NM_001170785, intron 26 of 27)	intron (NM_001170785, intron 26 of 27)	92888.0	NR_152620	102632515.0	Mm.416995	NR_152620	ENSMUSG00000111266	Gm30570	-	predicted gene, 30570	ncRNA	3.5	0.5	2.5	0.0	0.0	1.0
Merged-chr17-4840330-3	chr17	4839820	4840820	+	703.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-154754.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71863711-2	chr2	71863220	71864220	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 3 of 3).2	intron (NR_039557, intron 3 of 3).2	-9504.0	NM_172665	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	7.5	5.0	3.5	0.0	9.5	5.0
Merged-chr11-101175992-2	chr11	101175492	101176492	+	703.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007721)	promoter-TSS (NM_007721)	-125.0	NM_016782	53321.0	Mm.474527	NM_016782	ENSMUSG00000017167	Cntnap1	AI841080|Caspr|NCP1|Nrxn4|p190|shm	contactin associated protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100188762-2	chr12	100188262	100189262	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045282, intron 1 of 2)	intron (NR_045282, intron 1 of 2)	794.0	NR_045282	100038378.0	Mm.387075	NR_045282	ENSMUSG00000072884	Gm10433	-	predicted gene 10433	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-117455059-2	chr6	117454559	117455559	+	703.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40176.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44446726-2	chr9	44446226	44447226	+	703.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-5858.0	NM_001033469	382074.0	Mm.335103	NM_001033469	ENSMUSG00000074397	Foxr1	Foxn5|Gm1115	forkhead box R1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36611493-2	chr15	36610993	36611993	+	703.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-2520.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84985714-1	chr1	84985214	84986214	+	703.0	f1_balb.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	-50631.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145113178-2	chr7	145112678	145113678	+	703.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94941.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	84.5	175.5	65.5	55.0	96.5	35.5
Merged-chr11-80474196-2	chr11	80473696	80474696	+	703.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2827.0	NM_009871	12569.0	Mm.142275	NM_009871	ENSMUSG00000048895	Cdk5r1	Cdk5r|D11Bwg0379e|p25|p35	cyclin-dependent kinase 5, regulatory subunit 1 (p35)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24705320-2	chr17	24704820	24705820	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145396, intron 6 of 21)	intron (NM_145396, intron 6 of 21)	2333.0	NM_145396	213773.0	Mm.100353	NM_145396	ENSMUSG00000040688	Tbl3	9430070M15Rik	transducin (beta)-like 3	protein-coding	0.0	0.0	2.5	0.0	0.5	0.0
Merged-chr17-94730697-2	chr17	94730197	94731197	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176917, intron 8 of 8)	intron (NM_176917, intron 8 of 8)	19322.0	NM_001357136	76781.0	Mm.139146	NM_176917	ENSMUSG00000055660	Mettl4	2410198H06Rik|A730091E08Rik|AV296509|HsT661	methyltransferase like 4	protein-coding	0.0	0.0	0.0	6.5	0.0	0.0
Merged-chr7-38084008-2	chr7	38083508	38084508	+	703.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23482.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	0.5	4.0	0.0	4.5	8.0	1.5
Merged-chr5-146809342-1	chr5	146808842	146809842	+	703.0	f1_balb.idr	Intergenic	B1_Mur4|SINE|Alu	-14386.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	48.0	77.0	58.0	17.5	47.5	31.0
Merged-chr8-117360372-2	chr8	117359872	117360872	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	11202.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52990940-2	chr2	52990440	52991440	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	MTC|LTR|ERVL-MaLR	133072.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-106951756-1	chr4	106951256	106952256	+	703.0	f1_c57bl6.idr	intron (NM_001355532, intron 1 of 14)	intron (NM_001355532, intron 1 of 14)	28571.0	NM_001355532	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	4.0	6.0	0.0	0.0	0.0	0.0
Merged-chr4-32573746-2	chr4	32573246	32574246	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109661, intron 3 of 4)	intron (NM_001109661, intron 3 of 4)	-2084.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	0.0	1.0	0.0	1.0	1.0	0.0
Merged-chr16-32458185-2	chr16	32457685	32458685	+	703.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_001163160, intron 3 of 8)	intron (NM_001163160, intron 3 of 8)	26955.0	NM_001163160	13026.0	Mm.98775	NM_009981	ENSMUSG00000005615	Pcyt1a	CTalpha|Cctalpha|Ctpct|Cttalpha	phosphate cytidylyltransferase 1, choline, alpha isoform	protein-coding	14.0	2.0	0.0	0.0	8.0	6.0
Merged-chr1-52118528-2	chr1	52118028	52119028	+	703.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357627)	promoter-TSS (NM_001357627)	-910.0	NM_001357627	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56360763-2	chr17	56360263	56361263	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172132, intron 5 of 22)	intron (NM_172132, intron 5 of 22)	34713.0	NM_001357909	193796.0	Mm.45047	NM_172132	ENSMUSG00000024201	Kdm4b	4732474L06Rik|Jmjd2b	lysine (K)-specific demethylase 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77923086-2	chr10	77922586	77923586	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 24 of 33)	intron (NM_138301, intron 24 of 33)	-20550.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40600592-3	chr12	40600095	40601095	+	703.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	154542.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184479900-2	chr1	184479400	184480400	+	703.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	77791.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-24279842-1	chr19	24279342	24280342	+	703.0	f1_c57bl6.idr	intron (NM_008044, intron 1 of 4)	MIRb|SINE|MIR	744.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	2.5	18.5	11.5	1.0	27.0	15.0
Merged-chr16-56031519-2	chr16	56031019	56032019	+	703.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1802.0	NM_001356450	76302.0	Mm.310642	NM_001024622	ENSMUSG00000071533	Pcnp	1110018D06Rik|AI647035	PEST proteolytic signal containing nuclear protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-185200052-1	chr1	185199552	185200552	+	703.0	f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-4116.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	8.5	0.5	2.0	0.0	10.5	1.0
Merged-chr2-167077422-2	chr2	167076922	167077922	+	703.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12129.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118245742-2	chr11	118245242	118246242	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	2850.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76846320-5	chr11	76845834	76846834	+	703.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007754, exon 1 of 21)	exon (NM_007754, exon 1 of 21)	674.0	NM_007754	12874.0	Mm.276736	NM_007754	ENSMUSG00000020841	Cpd	AA960140|AW322530|D830034L15Rik	carboxypeptidase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16686072-1	chr1	16685572	16686572	+	703.0	f1_balb.idr	Intergenic	B1_Mm|SINE|Alu	-2384.0	NM_016923	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	9.0	23.5	8.0	6.5	5.0	10.0
Merged-chr8-36019559-1	chr8	36019059	36020059	+	703.0	f0_balb.idr	Intergenic	Intergenic	-75269.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	3.5	0.0	0.5	16.0	0.0	8.5
Merged-chr3-22142078-2	chr3	22141578	22142578	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	65426.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88479427-2	chr3	88478927	88479927	+	703.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	13885.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64397116-1	chr13	64396616	64397616	+	703.0	f1_c57bl6.idr	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-26596.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	4.0	6.5	3.0	2.5	8.0	4.0
Merged-chr6-100213668-2	chr6	100213168	100214168	+	703.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73690.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32450397-2	chr11	32449912	32450912	+	703.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	-4958.0	NM_001361561	327900.0	Mm.260956	NM_173784	ENSMUSG00000044949	Ubtd2	4930571L24|9630054F20Rik|AI645720	ubiquitin domain containing 2	protein-coding	0.0	0.0	2.0	0.0	8.5	2.5
Merged-chr1-85082533-1	chr1	85082033	85083033	+	703.0	f1_balb.idr	Intergenic	Intergenic	27320.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59252144-3	chr10	59251633	59252633	+	703.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30211.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4632506-2	chr16	4632006	4633006	+	703.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_030205, exon 17 of 28)	exon (NM_030205, exon 17 of 28)	-7439.0	NM_139307	246154.0	Mm.482140	NM_139307	ENSMUSG00000039646	Vasn	2610528G05Rik|Atia|Slitl2	vasorin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72584468-3	chr8	72583974	72584974	+	703.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357280, intron 4 of 4)	intron (NM_001357280, intron 4 of 4)	12651.0	NM_001357279	74166.0	Mm.212927	NM_144534	ENSMUSG00000031791	Tmem38a	1110001E17Rik|AI413399|SPR-27|TRIC-A|mg33a	transmembrane protein 38A	protein-coding	8.0	30.0	35.0	0.0	4.5	0.5
Merged-chr15-83165999-2	chr15	83165499	83166499	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029787, intron 2 of 8)	intron (NM_029787, intron 2 of 8)	6209.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85747270-2	chr12	85746770	85747770	+	703.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145447, exon 1 of 10)	exon (NM_145447, exon 1 of 10)	731.0	NM_145447	217721.0	Mm.301076	NM_145447	ENSMUSG00000034258	Flvcr2	CCT|Mfsd7c	feline leukemia virus subgroup C cellular receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71607236-2	chr8	71606738	71607738	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166213, intron 14 of 14)	intron (NM_001166213, intron 14 of 14)	-3786.0	NM_146211	234407.0	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	1.0	9.5	0.0	6.5	1.0	1.5
Merged-chr10-21200546-1	chr10	21200046	21201046	+	703.0	f0_balb.idr	Intergenic	Intergenic	13602.0	NR_152786	102636600.0	Mm.227606	NR_152786	ENSMUSG00000111005	Gm33619	-	predicted gene, 33619	ncRNA	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr11-75512397-2	chr11	75511897	75512897	+	703.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001029938, exon 7 of 8)	exon (NM_001029938, exon 7 of 8)	-1144.0	NM_001004157	380713.0	Mm.10486	NM_001004157	ENSMUSG00000038188	Scarf1	AA986099|SREC|SREC-I|mKIAA0149	scavenger receptor class F, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30093159-2	chr2	30092659	30093659	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037762, intron 1 of 4)	intron (NM_001037762, intron 1 of 4)	476.0	NM_025428	66220.0	Mm.22538	NM_025428	ENSMUSG00000015335	Zdhhc12	1190004A01Rik	zinc finger, DHHC domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-100646624-1	chr9	100646124	100647124	+	703.0	f1_c57bl6.idr	intron (NM_009282, intron 1 of 33)	PB1D10|SINE|Alu	3176.0	NM_001357265	20842.0	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	1.5	10.0	1.5	1.5	20.5	3.5
Merged-chr15-44598738-1	chr15	44598238	44599238	+	703.0	f0_balb.idr	Intergenic	Intergenic	-20489.0	NM_001357690	55960.0	Mm.287896	NM_019480	ENSMUSG00000022339	Ebag9	AI835379|Rcas1	estrogen receptor-binding fragment-associated gene 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83882731-2	chr11	83882231	83883231	+	703.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001291269, exon 5 of 9)	exon (NM_001291269, exon 5 of 9)	29771.0	NM_001291269	21410.0	Mm.7226	NM_009330	ENSMUSG00000020679	Hnf1b	HNF-1-beta|HNF-1B|HNF-1Beta|Hnf1beta|LFB3|Tcf-2|Tcf2|vHNF1	HNF1 homeobox B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-126403009-2	chr3	126402508	126403508	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173451, intron 1 of 1)	intron (NM_173451, intron 1 of 1)	39156.0	NM_173451	271970.0	Mm.317021	NM_173451	ENSMUSG00000046561	Arsj	9330196J05Rik|D830047F08	arylsulfatase J	protein-coding	1.0	0.0	2.5	11.5	12.0	0.5
Merged-chr10-4621206-1	chr10	4620706	4621706	+	703.0	f0_balb.idr	intron (NM_007956, intron 1 of 8)	intron (NM_007956, intron 1 of 8)	9217.0	NM_007956	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-82008174-2	chr10	82007674	82008674	+	703.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	-39949.0	NM_001319203	408062.0	Mm.391409	NM_001024626	ENSMUSG00000061371	Zfp873	-	zinc finger protein 873	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85248677-1	chr1	85248177	85249177	+	703.0	f1_balb.idr	intron (NM_175219, intron 6 of 7)	intron (NM_175219, intron 6 of 7)	21889.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97511064-2	chr6	97510573	97511573	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-23253.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	35.5	107.5	32.0	12.5	31.0	11.5
Merged-chr15-8682760-3	chr15	8682274	8683274	+	703.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148938, intron 3 of 9)	intron (NM_148938, intron 3 of 9)	28033.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-6513782-2	chr18	6513282	6514282	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007935, intron 1 of 13)	intron (NM_007935, intron 1 of 13)	2326.0	NM_007935	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	0.0	3.5	1.0	0.0	0.0	3.0
Merged-chr5-123890661-2	chr5	123890188	123891188	+	703.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-10668.0	NM_175520	243270.0	Mm.33362	NM_175520	ENSMUSG00000049241	Hcar1	Gpr81	hydrocarboxylic acid receptor 1	protein-coding	4.0	2.0	5.5	7.0	8.5	4.0
Merged-chr2-168902842-2	chr2	168902342	168903342	+	703.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52745.0	NM_009564	22722.0	Mm.2095	NM_009564	ENSMUSG00000027551	Zfp64	-	zinc finger protein 64	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr4-45009266-2	chr4	45008766	45009766	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173399, intron 1 of 1)	ORR1A1|LTR|ERVL-MaLR	3146.0	NM_001163284	230119.0	Mm.44222	NM_173399	ENSMUSG00000049657	Zbtb5	5930421I10|9430083K24Rik|AI646847|mKIAA0354	zinc finger and BTB domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125361775-2	chr5	125361275	125362275	+	703.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	-20681.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58497812-2	chr16	58497312	58498312	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 2 of 10)	intron (NM_001357433, intron 2 of 10)	25614.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-118711753-2	chr12	118711253	118712253	+	703.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-134576.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124929707-2	chr5	124929207	124930207	+	703.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	67002.0	NM_001081750	269704.0	Mm.138617	NM_001081750	ENSMUSG00000079215	Zfp664	AW060232|D930038J03Rik|ZFOC1|Znf664	zinc finger protein 664	protein-coding	0.0	0.0	3.0	1.0	1.5	0.0
Merged-chr16-23311195-4	chr16	23310690	23311690	+	703.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252506, intron 1 of 6)	L1Md_F2|LINE|L1	20720.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140444436-2	chr5	140443936	140444936	+	703.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	17097.0	NR_106005	102466792.0		NR_106005	ENSMUSG00000098319	Mir7038	Gm27955|mmu-mir-7038	microRNA 7038	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53316939-2	chr19	53316439	53317439	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	intron (NM_001360348, intron 1 of 5)	5494.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66344559-1	chr7	66344059	66345059	+	703.0	f1_c57bl6.idr	intron (NM_146191, intron 2 of 33)	B4A|SINE|B4	37165.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	17.0	16.0	3.0	22.0	10.0	16.5
Merged-chr11-70207190-2	chr11	70206690	70207690	+	703.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-6720.0	NM_153081	216867.0	Mm.289238	NM_153081	ENSMUSG00000040938	Slc16a11	AB041591|MCT 11|MNCb-2717	solute carrier family 16 (monocarboxylic acid transporters), member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99913222-2	chr10	99912722	99913722	+	702.916687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102599.0	NM_001347156	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93727148-3	chr1	93726658	93727658	+	702.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025920, intron 2 of 5)	intron (NM_025920, intron 2 of 5)	4768.0	NM_001310761	67026.0	Mm.272356	NM_025920	ENSMUSG00000026279	Thap4	2010320B01Rik	THAP domain containing 4	protein-coding	1.5	0.0	1.0	0.0	0.0	0.0
Merged-chr11-119046586-2	chr11	119046086	119047086	+	702.916687	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5673.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23867539-2	chr18	23867039	23868039	+	702.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	MLT1E1A|LTR|ERVL-MaLR	63569.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-41138692-3	chr8	41138201	41139201	+	702.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4975.0	NM_001005863	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	3.0	10.0	2.0	0.0	0.0	1.0
Merged-chr13-100831308-2	chr13	100830808	100831808	+	702.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_022885, intron 1 of 15)	intron (NM_022885, intron 1 of 15)	2119.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109002084-3	chr8	109001588	109002588	+	702.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	65228.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90220894-3	chr3	90220446	90221446	+	702.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026677, exon 1 of 8)	exon (NM_026677, exon 1 of 8)	162.0	NM_026677	68328.0	Mm.29355	NM_026677	ENSMUSG00000027935	Rab13	0610007N03Rik|B230212B15Rik	RAB13, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-69823698-4	chr14	69823166	69824166	+	702.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16741.0	NM_028560	73523.0	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12213831-3	chr15	12213308	12214308	+	702.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356498, intron 1 of 15)	intron (NM_001356498, intron 1 of 15)	8780.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123683891-3	chr9	123683394	123684394	+	702.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5062.0	NM_139142	102680.0	Mm.440867	NM_139142	ENSMUSG00000036814	Slc6a20a	A730081N20Rik|AU022428|Xt3s1|Xtrp3s1	solute carrier family 6 (neurotransmitter transporter), member 20A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46242122-3	chr8	46241630	46242630	+	702.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31068.0	NM_007450	11739.0	Mm.16228	NM_007450	ENSMUSG00000031633	Slc25a4	AU019225|Ant1|mANC1	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-27390845-2	chr16	27390345	27391345	+	702.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025615, intron 1 of 9)	intron (NM_001025615, intron 1 of 9)	1889.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105071139-2	chr4	105070639	105071639	+	702.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356568, intron 1 of 7)	MTE2a|LTR|ERVL-MaLR	38759.0	NM_178143	108079.0	Mm.48638	NM_178143	ENSMUSG00000028518	Prkaa2	2310008I11Rik|A830082D05|AMPKalpha2	protein kinase, AMP-activated, alpha 2 catalytic subunit	protein-coding	18.0	5.5	7.0	0.0	1.0	9.0
Merged-chr7-79914835-2	chr7	79914335	79915335	+	702.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_009682, intron 3 of 5)	B2_Mm2|SINE|B2	5805.0	NM_009682	11778.0	Mm.220173	NM_009682	ENSMUSG00000063801	Ap3s2	[s]3B	adaptor-related protein complex 3, sigma 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172369781-2	chr1	172369273	172370273	+	702.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001039484, exon 2 of 2)	exon (NM_001039484, exon 2 of 2)	-6758.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	5.0	13.5	9.0	39.5	42.0	44.0
Merged-chr13-52647200-2	chr13	52646700	52647700	+	702.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001198977, exon 14 of 14)	3' UTR (NM_001198977, exon 14 of 14)	50318.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-67917257-3	chr8	67916745	67917745	+	702.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177698, intron 3 of 14)	intron (NM_177698, intron 3 of 14)	-6299.0	NM_030263	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-80057946-3	chr8	80057403	80058403	+	702.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_020259, exon 1 of 13)	5' UTR (NM_020259, exon 1 of 13)	105.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93497449-3	chr2	93496948	93497948	+	702.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-34498.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0.0	4.0	1.5	0.0	4.0	4.0
Merged-chr1-85594509-1	chr1	85594009	85595009	+	702.666687	f1_balb.idr	intron (NM_030194, intron 2 of 11)	intron (NM_030194, intron 2 of 11)	4301.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-129531820-3	chr7	129531312	129532312	+	702.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-60051.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-92007770-3	chr2	92007304	92008304	+	702.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011957, intron 1 of 11)	intron (NM_011957, intron 1 of 11)	16366.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	0.0	5.0	4.0	0.0	3.5	2.0
Merged-chr5-102027409-3	chr5	102026901	102027901	+	702.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	42520.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	41.0	49.5	62.5	15.0	34.5	31.0
Merged-chr6-81976148-3	chr6	81975655	81976655	+	702.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10206.0	NM_026490	56284.0	Mm.276293	NM_026490	ENSMUSG00000030045	Mrpl19	9030416F12Rik|9130412E02Rik|D6Ertd157e|MRP-L15|RLX1|Rpml15	mitochondrial ribosomal protein L19	protein-coding	3.0	5.0	3.0	0.0	3.0	0.5
Merged-chr10-6418358-3	chr10	6417846	6418846	+	702.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-340247.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74848256-4	chr11	74847857	74848857	+	702.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_197943)	TTS (NM_197943)	17433.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr3-69204221-2	chr3	69203721	69204721	+	702.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-18198.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	5.5	4.0	2.0	5.5	4.0	2.0
Merged-chr4-40144321-2	chr4	40143821	40144821	+	702.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007386, intron 1 of 20)	intron (NM_007386, intron 1 of 20)	1056.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25515121-2	chr14	25514621	25515621	+	702.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 2 of 23)	intron (NM_183208, intron 2 of 23)	-19318.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-145055046-2	chr5	145054546	145055546	+	702.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	12056.0	NM_027069	69396.0	Mm.45463	NM_027069	ENSMUSG00000029620	1700018F24Rik	AV045857	RIKEN cDNA 1700018F24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95390393-3	chr13	95389878	95390878	+	702.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15021.0	NM_025630	66549.0	Mm.36785	NM_025630	ENSMUSG00000021681	Aggf1	2010009L17Rik|2310029P06Rik|AW112072|Peg3|VG5Q	angiogenic factor with G patch and FHA domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4864620-4	chr2	4864091	4865091	+	702.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-16973.0	NM_175400	109079.0	Mm.34329	NM_175400	ENSMUSG00000026662	Sephs1	1110046B24Rik|AA589574|AI505014|AW111620|SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77705002-3	chr18	77704470	77705470	+	702.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178670, intron 1 of 4)	intron (NM_178670, intron 1 of 4)	9040.0	NM_178670	212163.0	Mm.23293	NM_178670	ENSMUSG00000047466	8030462N17Rik	Akd2|Ark2N	RIKEN cDNA 8030462N17 gene	protein-coding	7.5	13.0	17.0	21.5	12.0	22.0
Merged-chr1-9541343-3	chr1	9540810	9541810	+	702.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4098.0	NM_021511	59014.0	Mm.29061	NM_021511	ENSMUSG00000061024	Rrs1	5730466A07Rik|AA415037|D1Ertd701e|Rrr	ribosome biogenesis regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83482987-7	chr7	83482536	83483536	+	702.552368	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101895.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	4.0	5.5	1.5	1.0	3.0	0.5
Merged-chr12-69574703-8	chr12	69574185	69575185	+	702.510437	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8343.0	NM_001033236	207965.0	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113588816-2	chr13	113588316	113589316	+	702.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29748.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81763338-2	chr13	81762838	81763838	+	702.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19909.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24179218-2	chr7	24178718	24179718	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029933, intron 3 of 3)	ORR1C1-int|LTR|ERVL-MaLR	4196.0	NM_001029933	232966.0	Mm.435485	NM_001029933	ENSMUSG00000068962	Zfp114	Gm1957|Zfp110	zinc finger protein 114	protein-coding	0.0	1.5	2.0	0.0	1.5	0.0
Merged-chr12-99559614-2	chr12	99559114	99560114	+	702.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4227.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102035747-2	chr5	102035247	102036247	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	34174.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165616076-2	chr1	165615576	165616576	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	18465.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55331167-2	chr13	55330664	55331664	+	702.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1434.0	NM_016662	17121.0	Mm.20350	NM_016662	ENSMUSG00000021485	Mxd3	4631412E13Rik|Mad3|bHLHc13	Max dimerization protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-127992337-2	chr6	127991837	127992837	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356301, intron 2 of 7)	intron (NM_001356301, intron 2 of 7)	104715.0	NM_026743	68498.0	Mm.174368	NM_026743	ENSMUSG00000030351	Tspan11	1110014F12Rik|AU067806	tetraspanin 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75568300-2	chr11	75567800	75568800	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 10 of 13)	intron (NM_001199284, intron 10 of 13)	16871.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31023239-2	chr5	31022739	31023739	+	702.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14-int|LTR|ERV1	24840.0	NM_177870	330064.0	Mm.205463	NM_177870	ENSMUSG00000006641	Slc5a6	E430023I20	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72896728-2	chr6	72896228	72897228	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019715, intron 1 of 6)	MER58B|DNA|hAT-Charlie	2564.0	NM_001347231	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	2.5	2.5	1.0	1.0	1.0	0.0
Merged-chr17-42926786-2	chr17	42926286	42927286	+	702.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-50362.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139776559-2	chr5	139776059	139777059	+	702.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026748)	promoter-TSS (NM_026748)	-881.0	NM_026748	68510.0	Mm.292942	NM_026748	ENSMUSG00000029547	Ints1	1110015K06Rik	integrator complex subunit 1	protein-coding	2.0	4.0	12.0	5.0	8.5	3.0
Merged-chr9-65232667-2	chr9	65232167	65233167	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177460, intron 4 of 6)	ORR1D2|LTR|ERVL-MaLR	17977.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47711250-2	chr9	47710687	47711687	+	702.5	f0_c57.idr|f1_balb.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	107021.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	29.5	54.5	33.5	33.0	59.5	39.5
Merged-chr19-10915133-2	chr19	10914633	10915633	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009580, intron 9 of 11)	intron (NM_009580, intron 9 of 11)	5468.0	NM_009580	22786.0	Mm.24767	NM_009580	ENSMUSG00000024734	Zp1	-	zona pellucida glycoprotein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81919824-2	chr15	81919324	81920324	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030229, intron 2 of 5)	intron (NM_030229, intron 2 of 5)	6389.0	NM_030229	78929.0	Mm.215115	NM_030229	ENSMUSG00000022476	Polr3h	5031409G22Rik|RPC8	polymerase (RNA) III (DNA directed) polypeptide H	protein-coding	2.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4031120-2	chr19	4030620	4031620	+	702.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	A-rich|Low_complexity|Low_complexity	6792.0	NM_013541	14870.0	Mm.299292	NM_013541	ENSMUSG00000060803	Gstp1	GstpiB	glutathione S-transferase, pi 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33955741-2	chr16	33955241	33956241	+	702.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009471, exon 6 of 6)	3' UTR (NM_009471, exon 6 of 6)	11297.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-66838509-3	chr1	66837960	66838960	+	702.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007381, intron 8 of 10)	intron (NM_007381, intron 8 of 10)	-20865.0	NM_001122738	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87469527-2	chr6	87469027	87470027	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 6 of 10)	MTEb|LTR|ERVL-MaLR	26800.0	NR_104483	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88511529-2	chr15	88511015	88512015	+	702.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88787.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	3.0	0.0	3.5	0.0	0.0	1.5
Merged-chr18-56823110-2	chr18	56822610	56823610	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177115, intron 1 of 4)	intron (NM_177115, intron 1 of 4)	102438.0	NM_177115	320253.0	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-22308260-2	chr14	22307760	22308760	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 2 of 6)	intron (NM_028275, intron 2 of 6)	234538.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-62201110-2	chr1	62200610	62201610	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081050, intron 11 of 22)	intron (NM_001081050, intron 11 of 22)	-65001.0	NR_151537	105243940.0		NR_151537		Pard3bos2	Gm12747	par-3 family cell polarity regulator beta, opposite strand 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34799010-2	chr2	34798510	34799510	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145522, intron 1 of 7)	ID_B1|SINE|B4	902.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38599581-2	chr18	38599081	38600081	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011898, intron 1 of 1)	intron (NM_011898, intron 1 of 1)	1687.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114652811-2	chr11	114652311	114653311	+	702.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15732.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118185901-2	chr11	118185401	118186401	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 3 of 12)	intron (NM_001112700, intron 3 of 12)	26841.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60697442-2	chr18	60696942	60697942	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348100, intron 9 of 14)	intron (NM_001348100, intron 9 of 14)	30124.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	1.5	0.0	0.0	0.0	0.0	1.5
Merged-chr11-104317461-3	chr11	104316993	104317993	+	702.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285454, intron 6 of 9)	intron (NM_001285454, intron 6 of 9)	86057.0	NM_001285454	17762.0	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-96633682-2	chr6	96633182	96634182	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_182808, intron 3 of 4)	(GA)n|Simple_repeat|Simple_repeat	426729.0	NM_177233	320701.0	Mm.131700	NM_177233	ENSMUSG00000046500	Fam19a4	C130034I18Rik|Fam19a4 Tafa-4|Tafa-4	family with sequence similarity 19, member A4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41280731-2	chr19	41280231	41281231	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 16 of 16)	B4A|SINE|B4	-16727.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.0	2.0	0.5	9.5	1.0	0.5
Merged-chr15-89377609-2	chr15	89377109	89378109	+	702.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138302)	promoter-TSS (NM_138302)	-573.0	NM_138302	72962.0	Mm.287977	NM_138302	ENSMUSG00000022615	Tymp	2900072D10Rik|Ecgf1|PD-ECGF|PDECGF|Pdgfec|TP	thymidine phosphorylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-119463584-2	chr1	119463084	119464084	+	702.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	41198.0	NM_022327	64143.0	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-66323612-2	chr8	66323112	66324112	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 4 of 7)	intron (NM_175188, intron 4 of 7)	-62689.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-20032654-2	chr4	20032154	20033154	+	702.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2-int|LTR|ERVL-MaLR	-9398.0	NM_010281	14590.0	Mm.20461	NM_010281	ENSMUSG00000073987	Ggh	gamma-GH	gamma-glutamyl hydrolase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120453366-2	chr11	120452866	120453866	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_126089, intron 1 of 3)	intron (NR_126089, intron 1 of 3)	134.0	NR_126089	18588.0	Mm.39200	NM_012065	ENSMUSG00000025386	Pde6g	Pdeg|p3AT	phosphodiesterase 6G, cGMP-specific, rod, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143033404-2	chr5	143032904	143033904	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	B1_Mur2|SINE|Alu	73049.0	NM_007984	14086.0	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-56062290-2	chr8	56061790	56062790	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080438, intron 4 of 9)	L1_Mus4|LINE|L1	121465.0	NM_080438	110304.0	Mm.307061	NM_080438	ENSMUSG00000038257	Glra3	-	glycine receptor, alpha 3 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47777123-2	chr17	47776623	47777623	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-8621.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.0	3.5	0.5	5.0	3.0	4.0
Merged-chr4-155775450-2	chr4	155774950	155775950	+	702.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_147776)	promoter-TSS (NM_147776)	-889.0	NM_147776	246228.0	Mm.26515	NM_147776	ENSMUSG00000042116	Vwa1	4932416A11Rik|WARP	von Willebrand factor A domain containing 1	protein-coding	0.0	0.0	3.0	0.0	3.5	1.5
Merged-chr10-60124230-2	chr10	60123730	60124730	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_052994, intron 5 of 10)	intron (NM_052994, intron 5 of 10)	-2546.0	NR_105871	102465546.0		NR_105871	ENSMUSG00000105468	Mir6906	mmu-mir-6906	microRNA 6906	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-16220764-3	chr2	16220258	16221258	+	702.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310455, intron 37 of 38)	intron (NM_001310455, intron 37 of 38)	-135546.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18958486-2	chr16	18957985	18958985	+	702.458374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010435, intron 24 of 24)	L1Md_T|LINE|L1	81735.0	NM_010435	15260.0	Mm.15694	NM_010435	ENSMUSG00000022702	Hira	AA138857|D16Ertd95e|Gm15797|N28177|Tuple1	histone cell cycle regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33625740-3	chr16	33625221	33626221	+	702.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 8 of 11)	ORR1F|LTR|ERVL-MaLR	-58745.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128899499-2	chr6	128898999	128899999	+	702.416687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8375.0	NM_001254946	232406.0	Mm.30745	NM_001254946	ENSMUSG00000090164	BC035044	-	cDNA sequence BC035044	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr12-109525774-4	chr12	109525272	109526272	+	702.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15224.0	NR_027652	17263.0	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103694526-3	chr14	103694026	103695026	+	702.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045148, exon 3 of 3)	non-coding (NR_045148, exon 3 of 3)	4906.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50269419-2	chr11	50268919	50269919	+	702.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 1 of 4)	B2_Mm2|SINE|B2	22917.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105092783-4	chr1	105092316	105093316	+	702.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-263191.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-76638467-2	chr13	76637953	76638953	+	702.333374	f0_c57.idr|f1_balb.idr	intron (NM_030174, intron 1 of 20)	MIR|SINE|MIR	253492.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	9.0	14.0	11.0	2.5	3.0	2.0
Merged-chr16-11136495-2	chr16	11135995	11136995	+	702.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145931)	TTS (NM_145931)	-1963.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89777035-2	chr3	89776535	89777535	+	702.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027315, intron 3 of 12)	intron (NM_027315, intron 3 of 12)	3426.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121956549-3	chr14	121956037	121957037	+	702.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183031, intron 1 of 1)	intron (NM_183031, intron 1 of 1)	8656.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	6.0	12.5	3.5	6.0	12.5	3.5
Merged-chr19-38429288-3	chr19	38428766	38429766	+	702.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33286.0	NM_175507	240660.0	Mm.262085	NM_175507	ENSMUSG00000044026	Slc35g1	AA590464|D330039I19Rik|Tmem20	solute carrier family 35, member G1	protein-coding	0.0	5.0	2.0	1.0	12.0	3.5
Merged-chr6-50304498-2	chr6	50303998	50304998	+	702.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_027881, intron 18 of 21)	PB1D10|SINE|Alu	-42729.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57399036-3	chr17	57398525	57399525	+	702.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 2 of 22)	L1Md_F2|LINE|L1	40339.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37226707-3	chr10	37226213	37227213	+	702.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-87787.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27400238-2	chr2	27399738	27400738	+	702.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	27370.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46901564-3	chr19	46901058	46902058	+	702.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029810, intron 5 of 17)	intron (NM_029810, intron 5 of 17)	60793.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	1.0	2.0	2.0	0.0	0.0	0.5
Merged-chr4-124228761-3	chr4	124228293	124229293	+	702.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	257166.0	NR_040774	78460.0	Mm.452060	NR_040774		1700057H15Rik	-	RIKEN cDNA 1700057H15 gene	ncRNA	2.5	0.0	0.5	10.0	4.5	2.0
Merged-chr16-57960073-3	chr16	57959569	57960569	+	702.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-205332.0	NM_007739	12837.0	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding	0.0	5.5	0.0	0.0	2.0	0.0
Merged-chr8-10827654-2	chr8	10827154	10828154	+	702.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54800.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85828953-2	chr11	85828453	85829453	+	702.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_077059, intron 1 of 4)	intron (NR_077059, intron 1 of 4)	3435.0	NR_077059	69909.0	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34909169-2	chr19	34908669	34909669	+	702.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-13189.0	NM_001362434	240641.0	Mm.278471	NM_183046	ENSMUSG00000024795	Kif20b	33cex|C330014J10Rik|MPP1|Mphosph1|magoo	kinesin family member 20B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134244381-3	chr1	134243897	134244897	+	702.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8940.0	NM_001008533	11539.0	Mm.298908	NM_009629	ENSMUSG00000042429	Adora1	A1-AR|A1AR|A1R|AA1R|AI848715|BB176431|Ri	adenosine A1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52425712-3	chr2	52425186	52426186	+	702.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182994)	promoter-TSS (NM_182994)	-812.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90251886-3	chr9	90251372	90252372	+	702.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	18897.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116419346-3	chr11	116418806	116419806	+	702.208313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6274.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	1.5	16.5	6.0	7.0	7.0	10.0
Merged-chr13-24036483-3	chr13	24036079	24037079	+	702.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001311122, exon 33 of 38)	exon (NM_001311122, exon 33 of 38)	-45365.0	NM_145399	214189.0	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44637869-3	chr9	44637374	44638374	+	702.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_181324, exon 14 of 14)	3' UTR (NM_181324, exon 14 of 14)	32982.0	NM_181324	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	1.0	0.0	0.0	0.0	0.0	2.5
Merged-chr7-30958441-2	chr7	30957941	30958941	+	702.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_017405, exon 9 of 10)	exon (NM_017405, exon 9 of 10)	-1638.0	NM_011680	22282.0	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-116992137-2	chr8	116991637	116992637	+	702.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026572, intron 1 of 4)	MIRb|SINE|MIR	1312.0	NM_026572	68133.0	Mm.258462	NM_026572	ENSMUSG00000034424	Gcsh	1100001L02Rik|5730591C18Rik	glycine cleavage system protein H (aminomethyl carrier)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21190556-2	chr5	21190056	21191056	+	702.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 1 of 26)	intron (NR_153365, intron 1 of 26)	4289.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22801949-2	chr8	22801440	22802440	+	702.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029505, intron 2 of 8)	B3|SINE|B2	3714.0	NM_029505	64933.0	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	4.0	1.5	9.0	1.5	0.0	6.0
Merged-chr12-117820284-3	chr12	117819782	117820782	+	702.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23579.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	1.0	3.0	2.0	2.0	0.0	2.5
Merged-chr15-6415543-3	chr15	6415063	6416063	+	702.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	28815.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70674885-2	chr8	70674385	70675385	+	702.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_015816, intron 1 of 4)	intron (NM_015816, intron 1 of 4)	1654.0	NM_015816	50783.0	Mm.248188	NM_015816	ENSMUSG00000031848	Lsm4	-	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	1.5	6.5	7.0	0.5	6.0	7.5
Merged-chr17-71869722-2	chr17	71869253	71870253	+	702.083374	f0_balb.idr|f1_balb.idr	exon (NM_007439, exon 29 of 29)	exon (NM_007439, exon 29 of 29)	87806.0	NM_030179	78785.0	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	0.0	0.0	0.0	0.0	1.5	6.0
Merged-chr2-129364219-1	chr2	129363719	129364719	+	702.0	f1_balb.idr	TTS (NM_008361)	TTS (NM_008361)	-5683.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	18.0	26.0	32.5	29.5	28.5	38.0
Merged-chr11-5528208-2	chr11	5527708	5528708	+	702.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_134033)	TTS (NM_134033)	7567.0	NM_001271730	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16151739-2	chr1	16151239	16152239	+	702.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	45857.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0.0	3.5	0.0	5.0	3.0	0.0
Merged-chr14-117761306-3	chr14	117760787	117761787	+	702.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011821, intron 4 of 8)	X1_LINE|LINE|CR1	192560.0	NR_105747	102465148.0		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	0.0	1.0	5.5	2.0	0.0	2.5
Merged-chr15-99672911-1	chr15	99672411	99673411	+	702.0	f1_c57bl6.idr	exon (NM_009597, exon 3 of 12)	exon (NM_009597, exon 3 of 12)	2534.0	NM_009597	11419.0	Mm.440107	NM_009597	ENSMUSG00000023017	Asic1	AI843610|ASIC|ASIC1a|Accn2|B530003N02Rik|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr4-134938665-2	chr4	134938165	134939165	+	702.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TAAA)n|Simple_repeat|Simple_repeat	7685.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34309568-2	chr11	34309061	34310061	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 29 of 51)	intron (NM_033374, intron 29 of 51)	-5261.0	NM_001025382	574403.0	Mm.444796	NM_001025382	ENSMUSG00000069911	Fam196b	EG574403|Gm6041	family with sequence similarity 196, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr10-89407065-5	chr10	89406564	89407564	+	702.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36903.0	NM_001284344	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	17.0	10.5	0.5	0.0	0.0	2.5
Merged-chr11-55132158-2	chr11	55131658	55132658	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172258, intron 7 of 10)	L1MB4|LINE|L1	19548.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31252059-2	chr5	31251559	31252559	+	702.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347326)	TTS (NM_001347326)	353.0	NM_027221	69815.0	Mm.389609	NM_027221	ENSMUSG00000029149	Krtcap3	2010001C09Rik|AW321088|Kcp3	keratinocyte associated protein 3	protein-coding	0.0	0.0	1.5	1.0	0.0	0.0
Merged-chr15-71917871-1	chr15	71917371	71918371	+	702.0	f0_balb.idr	intron (NM_027174, intron 23 of 63)	intron (NM_027174, intron 23 of 63)	116356.0	NM_027174	69700.0	Mm.322500	NM_027174	ENSMUSG00000079022	Col22a1	2310067L16Rik|C80743	collagen, type XXII, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83610684-2	chr8	83610184	83611184	+	702.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_018808, exon 3 of 3)	exon (NM_018808, exon 3 of 3)	2136.0	NM_001308227	81489.0	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr16-8827403-2	chr16	8826903	8827903	+	702.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2697.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84679700-3	chr18	84679192	84680192	+	702.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023149, intron 3 of 11)	intron (NM_023149, intron 3 of 11)	2367.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80429247-1	chr11	80428747	80429747	+	702.0	f0_c57.idr	intron (NM_178616, intron 1 of 13)	CpG	632.0	NM_178616	69077.0	Mm.260539	NM_178616	ENSMUSG00000017428	Psmd11	1700089D09Rik|1810019E17Rik|2610024G20Rik|2810055C24Rik|C78232|P44.5|S9	proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	protein-coding	25.5	7.0	8.0	0.5	17.0	6.5
Merged-chr7-110432469-3	chr7	110431961	110432961	+	702.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 13 of 40)	intron (NM_177324, intron 13 of 40)	182459.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-54071583-2	chr5	54071083	54072083	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081103, intron 2 of 11)	intron (NM_001081103, intron 2 of 11)	73060.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20795563-2	chr13	20795080	20796080	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_012054, intron 1 of 20)	MTC|LTR|ERVL-MaLR	1467.0	NM_012054	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	75.0	99.5	83.0	31.0	35.0	26.5
Merged-chr6-42355699-2	chr6	42355199	42356199	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289618, intron 4 of 9)	intron (NM_001289618, intron 4 of 9)	5871.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20818715-1	chr10	20818215	20819215	+	702.0	f0_balb.idr	Intergenic	Intergenic	-93637.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-136390263-2	chr7	136389763	136390763	+	702.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40848.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-33722280-3	chr8	33721797	33722797	+	702.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9617.0	NM_001167921	68153.0	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding	12.0	16.0	5.0	0.0	21.5	6.5
Merged-chr5-36595266-2	chr5	36594766	36595766	+	702.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9040.0	NM_001113362	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	1.0	1.0	5.0	1.5	0.0	1.0
Merged-chr6-131316607-1	chr6	131316107	131317107	+	702.0	f0_balb.idr	Intergenic	Intergenic	-2780.0	NM_172891	243659.0	Mm.20114	NM_172891	ENSMUSG00000032899	Styk1	9130025L13|AI326477|Nok	serine/threonine/tyrosine kinase 1	protein-coding	1.0	7.0	0.5	0.5	22.0	4.0
Merged-chr17-28688514-2	chr17	28688014	28689014	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290320, intron 1 of 19)	ID_B1|SINE|B4	1473.0	NM_001290320	224661.0		NM_146076	ENSMUSG00000036196	Slc26a8	-	solute carrier family 26, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64076028-1	chr7	64075528	64076528	+	702.0	f1_balb.idr	Intergenic	Intergenic	-77807.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87746036-2	chr11	87745536	87746536	+	702.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8485.0	NM_009296	20922.0	Mm.622	NM_009296	ENSMUSG00000020485	Supt4a	AL022777|Supt4h|Supt4h1|Supt4h1a	suppressor of Ty 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16260787-2	chr19	16260287	16261287	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 2 of 6)	intron (NM_008139, intron 2 of 6)	54217.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-19022769-2	chr11	19022269	19023269	+	702.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3800.0	NM_010789	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83375252-2	chr15	83374752	83375752	+	702.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011862)	TTS (NM_011862)	-7955.0	NR_027980	69291.0	Mm.66794	NM_001033147		1700001L05Rik	-	RIKEN cDNA 1700001L05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95551181-2	chr10	95550681	95551681	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358996, intron 3 of 4)	intron (NM_001358996, intron 3 of 4)	8140.0	NR_037212	100526463.0		NR_037212	ENSMUSG00000092867	Mir3058	mir-3058|mmu-mir-3058	microRNA 3058	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44929820-2	chr19	44929319	44930319	+	702.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1300.0	NM_172638	226151.0	Mm.212609	NM_172638	ENSMUSG00000036097	Slf2	3632432H19|Fam178a	SMC5-SMC6 complex localization factor 2	protein-coding	6.5	2.5	3.0	0.0	2.5	0.5
Merged-chr11-94325899-1	chr11	94325399	94326399	+	702.0	f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-2102.0	NM_027799	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	2.5	0.0	1.0	2.0	1.5	0.0
Merged-chr5-74252898-3	chr5	74252376	74253376	+	702.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114660, intron 5 of 8)	intron (NM_001114660, intron 5 of 8)	57550.0	NM_026878	68939.0	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	0.0	2.5	0.0	3.5	0.0	0.5
Merged-chr13-98261849-2	chr13	98261349	98262349	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178918, intron 1 of 12)	intron (NM_178918, intron 1 of 12)	1143.0	NM_178918	105372.0	Mm.28221	NM_178918	ENSMUSG00000041747	Utp15	AW544865	UTP15 small subunit processome component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-66441825-2	chr16	66441325	66442325	+	702.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	-215293.0	NR_040512	75501.0	Mm.394300	NR_040512	ENSMUSG00000092599	1700010K23Rik	-	RIKEN cDNA 1700010K23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164837837-2	chr2	164837337	164838337	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038492, intron 11 of 14)	intron (NM_001038492, intron 11 of 14)	4064.0	NM_008906	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69411044-1	chr12	69410544	69411544	+	702.0	f0_balb.idr	Intergenic	Intergenic	38894.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	0.0	0.0	0.0	2.0	0.5	3.0
Merged-chr5-134686364-2	chr5	134685864	134686864	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010717, intron 2 of 15)	RSINE1|SINE|B4	2226.0	NM_010717	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44766565-2	chr16	44766065	44767065	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	829.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-143150789-3	chr6	143150289	143151289	+	702.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153819, intron 2 of 8)	intron (NR_153819, intron 2 of 8)	3142.0	NR_153819	102633311.0	Mm.333484	NR_153819		Gm31108	Gm31169	predicted gene, 31108	ncRNA	2.5	0.5	6.5	2.5	0.5	6.5
Merged-chr1-105788110-2	chr1	105787610	105788610	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	7387.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100493575-2	chr15	100493075	100494075	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153407, intron 1 of 4)	B1_Mur3|SINE|Alu	1664.0	NM_153407	207785.0	Mm.294969	NM_153407	ENSMUSG00000044636	Csrnp2	CSRNP-2|Csnrp2|taip-12	cysteine-serine-rich nuclear protein 2	protein-coding	0.0	3.5	0.0	7.5	6.0	0.0
Merged-chr4-101253059-1	chr4	101252559	101253559	+	702.0	f0_balb.idr	intron (NM_146145, intron 1 of 24)	intron (NM_146145, intron 1 of 24)	12223.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-69540862-2	chr13	69540306	69541306	+	702.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	-6942.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	2.5	4.5	3.0	1.5	3.5	5.0
Merged-chr7-88286324-2	chr7	88285824	88286824	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009982, intron 2 of 6)	RSINE1|SINE|B4	8239.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	3.5	6.0	4.5	1.0	7.0	2.5
Merged-chr5-117513225-2	chr5	117512680	117513680	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 3 of 19)	MIR|SINE|MIR	99178.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0.0	0.0	0.0	0.0	1.0	1.0
Merged-chr11-79711977-2	chr11	79711527	79712527	+	702.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029579)	promoter-TSS (NR_029579)	58.0	NR_029579	387188.0		NR_029579	ENSMUSG00000065395	Mir193a	Mir193|Mirn193|mir-193a|mmu-mir-193|mmu-mir-193a	microRNA 193a	ncRNA	1.0	0.0	1.5	1.0	0.0	1.5
Merged-chr10-129596570-2	chr10	129596070	129597070	+	702.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	11909.0	NM_146931	258933.0	Mm.377755	NM_146931	ENSMUSG00000052012	Olfr796	MOR269-1	olfactory receptor 796	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21851982-1	chr10	21851482	21852482	+	702.0	f1_balb.idr	Intergenic	Intergenic	-30202.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	1.5	2.0	1.5	0.0	2.0	0.0
Merged-chr10-99417190-1	chr10	99416690	99417690	+	702.0	f0_balb.idr	Intergenic	Intergenic	153959.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77908476-2	chr10	77907976	77908976	+	702.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_138301, exon 34 of 34)	3' UTR (NM_138301, exon 34 of 34)	-5940.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103220706-2	chr11	103220206	103221206	+	702.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016896, exon 16 of 16)	3' UTR (NM_016896, exon 16 of 16)	-2274.0	NM_177801	328019.0	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44121030-3	chr16	44120568	44121568	+	702.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	18191.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121291850-1	chr10	121291350	121292350	+	702.0	f0_balb.idr	intron (NM_001361015, intron 8 of 12)	intron (NM_001361015, intron 8 of 12)	19546.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	0.0	9.0	5.0	0.0	0.0	3.5
Merged-chr2-131258279-2	chr2	131257779	131258779	+	702.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3729.0	NM_001355681	74450.0	Mm.101264	NM_153501	ENSMUSG00000037514	Pank2	4933409I19Rik|AI642621	pantothenate kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99671956-2	chr15	99671456	99672456	+	702.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009597, exon 2 of 12)	exon (NM_009597, exon 2 of 12)	1579.0	NM_009597	11419.0	Mm.440107	NM_009597	ENSMUSG00000023017	Asic1	AI843610|ASIC|ASIC1a|Accn2|B530003N02Rik|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157069171-2	chr2	157068671	157069671	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	10094.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41322419-1	chr19	41321919	41322919	+	702.0	f0_balb.idr	intron (NM_031376, intron 7 of 16)	intron (NM_031376, intron 7 of 16)	-58415.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	20.0	30.5	19.0	11.5	26.0	24.0
Merged-chr7-132828178-3	chr7	132827686	132828686	+	702.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347629, intron 3 of 3)	intron (NM_001347629, intron 3 of 3)	-14990.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-60869644-2	chr8	60869144	60870144	+	702.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20749.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32370708-2	chr4	32370208	32371208	+	702.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46727.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119773080-2	chr8	119772580	119773580	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028883, intron 2 of 7)	B1F1|SINE|Alu	5336.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101418828-2	chr7	101418328	101419328	+	702.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2863.0	NM_001008548	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	1.5	2.5	0.0	1.5	3.0	0.0
Merged-chr19-23150433-2	chr19	23149933	23150933	+	702.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_035423)	TTS (NR_035423)	1002.0	NR_035423	100316672.0		NR_035423	ENSMUSG00000080626	Mir1192	Mirn1192|mmu-mir-1192	microRNA 1192	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57744835-2	chr9	57744335	57745335	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153799, intron 6 of 6)	intron (NM_153799, intron 6 of 6)	21025.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16919479-1	chr7	16918979	16919979	+	702.0	f1_c57bl6.idr	intron (NM_007590, intron 2 of 5)	intron (NM_007590, intron 2 of 5)	4553.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	0.0	0.0	0.5	0.0	5.0	1.5
Merged-chr12-54794036-3	chr12	54793546	54794546	+	701.972229	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_026998, intron 2 of 13)	B3A|SINE|B2	1616.0	NM_026998	72183.0	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	39.0	97.0	60.5	47.5	104.0	85.0
Merged-chr8-124573639-3	chr8	124573162	124574162	+	701.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2449.0	NM_023709	73647.0	Mm.6209	NM_023709	ENSMUSG00000031981	Capn9	2200003B16Rik|GC36|nCL-4|nCL4	calpain 9	protein-coding	0.0	0.0	2.5	0.5	4.0	1.0
Merged-chr15-75120240-2	chr15	75119764	75120764	+	701.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-8293.0	NM_001099217	100041546.0	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	2.0	15.0	4.0	0.0	3.5	1.5
Merged-chr7-80086525-2	chr7	80086025	80087025	+	701.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001146000, exon 4 of 6)	exon (NM_001146000, exon 4 of 6)	-11268.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	2.5	0.0	1.5	0.0	0.0	0.0
Merged-chr2-124625963-2	chr2	124625463	124626463	+	701.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	15667.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32564375-2	chr11	32563865	32564865	+	701.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	31099.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	23.0	29.5	49.0	13.5	40.5	35.5
Merged-chr15-57888668-2	chr15	57888168	57889168	+	701.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_024207, intron 1 of 7)	intron (NM_024207, intron 1 of 7)	3750.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-98614197-3	chr9	98613697	98614697	+	701.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12518.0	NM_025485	64655.0	Mm.17949	NM_025485	ENSMUSG00000032459	Mrps22	3100002P07Rik|Rpms22	mitochondrial ribosomal protein S22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43267609-3	chr17	43267096	43268096	+	701.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2751.0	NM_133776	77596.0	Mm.159950	NM_133776	ENSMUSG00000041293	Adgrf1	5031409J19Rik|Gpr110|KPG_009	adhesion G protein-coupled receptor F1	protein-coding	2.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-65404612-3	chr16	65404133	65405133	+	701.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115996.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	3.0	2.0	9.0	4.5	2.5	7.5
Merged-chr14-61328130-1	chr14	61327630	61328630	+	701.799988	f0_balb.idr	Intergenic	Intergenic	18377.0	NM_177337	219144.0	Mm.206566	NM_177337	ENSMUSG00000043157	Arl11	ARLTS1|C730007L20Rik	ADP-ribosylation factor-like 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-94814826-3	chr3	94814341	94815341	+	701.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22726.0	NM_001165948	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	0.0	0.0	0.0	1.5	1.0	0.0
Merged-chr10-26806322-3	chr10	26805821	26806821	+	701.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	33809.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116651172-3	chr3	116650677	116651677	+	701.755554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008246, intron 2 of 11)	intron (NM_008246, intron 2 of 11)	11500.0	NM_008246	15247.0	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	8.0	18.5	5.5	9.0	10.0	11.0
Merged-chr7-63895386-2	chr7	63894867	63895867	+	701.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	MLT1C|LTR|ERVL-MaLR	-21490.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	10.0	3.0	3.5	3.5	0.5	5.0
Merged-chr5-99333213-2	chr5	99332713	99333713	+	701.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-80286.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-10029133-3	chr18	10028634	10029634	+	701.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038589, intron 1 of 14)	intron (NM_001038589, intron 1 of 14)	679.0	NM_001360884	59025.0	Mm.329277	NM_021522	ENSMUSG00000047879	Usp14	2610005K12Rik|2610037B11Rik|AW107924|C78769|ax|nmf375	ubiquitin specific peptidase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34052513-3	chr11	34052095	34053095	+	701.714294	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 2 of 20)	intron (NM_010696, intron 2 of 20)	5667.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132975088-4	chr4	132974578	132975578	+	701.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010208, intron 1 of 12)	intron (NM_010208, intron 1 of 12)	983.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79126860-3	chr3	79126356	79127356	+	701.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099624, intron 1 of 23)	intron (NM_001099624, intron 1 of 23)	18031.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	22.0	14.5	19.0	6.0	2.0	1.5
Merged-chr10-34206016-3	chr10	34205494	34206494	+	701.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	B3A|SINE|B2	1557.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-59984173-3	chr7	59983647	59984647	+	701.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_146211, intron 13 of 171)	Lx7|LINE|L1	-5291.0	NR_028529	100217429.0		NR_028529		Snord64	MBII-13	small nucleolar RNA, C/D box 64	snoRNA	0.5	14.5	2.0	0.0	0.0	0.0
Merged-chr17-64559238-3	chr17	64558735	64559735	+	701.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3645.0	NR_045899	100043582.0	Mm.11170	NR_045899	ENSMUSG00000073377	AU016765	-	expressed sequence AU016765	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64053756-2	chr15	64053256	64054256	+	701.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	6008.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135391975-2	chr5	135391475	135392475	+	701.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_148932, intron 2 of 12)	B1F|SINE|Alu	2571.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117111716-3	chr10	117111206	117112206	+	701.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177798, intron 1 of 9)	MLT1N2|LTR|ERVL-MaLR	36768.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84356231-3	chr3	84355702	84356702	+	701.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040752, intron 3 of 3)	intron (NR_040752, intron 3 of 3)	23719.0	NR_040752	75309.0	Mm.159497	NR_040752	ENSMUSG00000104004	4930565D16Rik	-	RIKEN cDNA 4930565D16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40192734-3	chr10	40192250	40193250	+	701.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50496.0	NM_001114332	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148662278-3	chr4	148661682	148662682	+	701.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085505, intron 5 of 10)	intron (NM_001085505, intron 5 of 10)	18865.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	2.0	12.5	2.0	4.0	9.5	8.5
Merged-chr15-98809049-2	chr15	98808549	98809549	+	701.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1124.0	NM_001013741	13199.0	Mm.390810	NM_001013741	ENSMUSG00000059213	Ddn	Gm748	dendrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26517062-2	chr17	26516562	26517562	+	701.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8590.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.5	1.0	0.0	0.5	0.5	0.0
Merged-chr1-72313687-2	chr1	72313187	72314187	+	701.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357519, intron 3 of 20)	MTD|LTR|ERVL-MaLR	6266.0	NM_001357519	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95001273-4	chr11	95000732	95001732	+	701.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172261, exon 5 of 10)	exon (NM_172261, exon 5 of 10)	-8647.0	NM_146025	217125.0	Mm.297199	NM_146025	ENSMUSG00000047181	Samd14	AI839049|AI854782|BC034054	sterile alpha motif domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120666723-2	chr10	120666223	120667223	+	701.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99009.0	NR_038000	70874.0	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144331163-7	chr2	144330614	144331614	+	701.6394650000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_152947, exon 2 of 4)	exon (NM_152947, exon 2 of 4)	248.0	NM_152947	107586.0	Mm.252750	NM_026924	ENSMUSG00000037279	Ovol2	1700108N11Rik|1810007D21Rik|M-OVO|M-OVO-A|M-OVO-B|MOVO|Ovo2|Zfp339|movo2	ovo like zinc finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80099983-4	chr7	80099461	80100461	+	701.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173011, intron 3 of 10)	intron (NM_173011, intron 3 of 10)	15389.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125582906-3	chr7	125582388	125583388	+	701.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20541.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	26.0	35.5	47.5	14.5	14.0	33.0
Merged-chr8-69953431-3	chr8	69952933	69953933	+	701.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 1 of 12)	intron (NM_001286450, intron 1 of 12)	20950.0	NM_001113346	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	5.5	10.0	8.0	8.0	20.5	12.0
Merged-chr19-4298060-2	chr19	4297560	4298560	+	701.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	8162.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47864906-3	chr19	47864420	47865420	+	701.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026619)	promoter-TSS (NM_026619)	-625.0	NM_030051	68214.0	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	16.0	13.5	44.0	13.0	28.0	41.5
Merged-chr15-94544484-3	chr15	94543977	94544977	+	701.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172437)	promoter-TSS (NM_172437)	817.0	NM_029926	266632.0	Mm.422858	NM_029926	ENSMUSG00000059883	Irak4	8430405M07Rik|9330209D03Rik|IRAK-4|NY-REN-64	interleukin-1 receptor-associated kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57577747-2	chr16	57577247	57578247	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025599, intron 1 of 9)	intron (NM_025599, intron 1 of 9)	28505.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80048830-2	chr18	80048330	80049330	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053117, intron 1 of 2)	intron (NM_053117, intron 1 of 2)	1935.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	0.0	0.0	1.0	0.0	1.5	1.5
Merged-chr16-22120764-2	chr16	22120264	22121264	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	42535.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79645688-2	chr3	79645198	79646198	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_212452, intron 17 of 17)	B4A|SINE|B4	16619.0	NM_029482	75939.0	Mm.221520	NM_029482	ENSMUSG00000027811	4930579G24Rik	-	RIKEN cDNA 4930579G24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-20227289-2	chr12	20226789	20227789	+	701.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	588490.0	NR_015521	69513.0	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77510315-2	chr11	77509815	77510815	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024920, intron 3 of 6)	intron (NM_001024920, intron 3 of 6)	2958.0	NM_001024920	216964.0	Mm.341211	NM_001024920	ENSMUSG00000044328	Trp53i13	2410019G02Rik|Tp53i13	transformation related protein 53 inducible protein 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-119072410-2	chr10	119071910	119072910	+	701.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20495.0	NR_045348	73400.0	Mm.416864	NR_045348	ENSMUSG00000100681	1700064J06Rik	-	RIKEN cDNA 1700064J06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111477279-2	chr10	111476779	111477779	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152558, intron 1 of 14)	intron (NR_152558, intron 1 of 14)	4052.0	NR_152558	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101853485-2	chr5	101852985	101853985	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 57 of 66)	MTD|LTR|ERVL-MaLR	88355.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.0	6.0	2.0	0.0	1.5	0.5
Merged-chr16-97533963-3	chr16	97533463	97534463	+	701.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-2118.0	NR_003508	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	5.5	2.5	2.5	4.0	7.0	4.5
Merged-chr1-87541777-2	chr1	87541277	87542277	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111314, intron 2 of 14)	ORR1F|LTR|ERVL-MaLR	-31415.0	NM_019867	53972.0	Mm.435439	NM_019867	ENSMUSG00000026259	Ngef	Tims2|ephexin	neuronal guanine nucleotide exchange factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-48882130-2	chr13	48881630	48882630	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033268, intron 17 of 17)	intron (NM_001033268, intron 17 of 17)	-11245.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101144480-2	chr7	101143980	101144980	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199012, intron 3 of 20)	(T)n|Simple_repeat|Simple_repeat	35705.0	NM_199012	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-39197381-2	chr15	39196881	39197881	+	701.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256382)	promoter-TSS (NM_001256382)	-905.0	NM_001256382	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46552911-2	chr4	46552419	46553419	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 2 of 11)	intron (NM_001164804, intron 2 of 11)	13521.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	5.0	28.5	9.5	0.0	19.5	6.5
Merged-chr13-48838388-2	chr13	48837888	48838888	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011078, intron 1 of 21)	L1MB8|LINE|L1	32497.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120172046-2	chr6	120171546	120172546	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-21777.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146741301-2	chr5	146740818	146741818	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 6 of 8)	MMAR1|DNA|TcMar-Mariner	53638.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	6.5	9.0	3.0	0.5	0.0	0.0
Merged-chr2-132243531-2	chr2	132243031	132244031	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027478, intron 3 of 3)	intron (NM_027478, intron 3 of 3)	4257.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96556783-2	chr3	96556283	96557283	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040409, intron 3 of 3)	intron (NR_040409, intron 3 of 3)	-1174.0	NM_023719	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	0.5	6.5	2.5	0.0	2.0	7.5
Merged-chr6-116774882-2	chr6	116774382	116775382	+	701.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-58124.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55595067-2	chr14	55594567	55595567	+	701.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_194346, exon 7 of 21)	exon (NM_194346, exon 7 of 21)	3325.0	NM_194346	268749.0	Mm.23748	NM_194346	ENSMUSG00000047098	Rnf31	AL033293|BC031509|Flj10111|HOIP|Paul|mFLJ00217	ring finger protein 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85810320-2	chr11	85809820	85810820	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_077059, intron 1 of 4)	intron (NR_077059, intron 1 of 4)	22068.0	NR_077059	69909.0	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111029728-2	chr8	111029235	111030235	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190786, intron 1 of 11)	RLTR31_Mm|LTR|ERVK	-1965.0	NM_001190800	234733.0	Mm.482176	NM_172284	ENSMUSG00000033658	Ddx19b	2810457M08Rik|4921519L13Rik|AW260119	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b	protein-coding	12.0	54.0	32.0	5.5	24.0	7.5
Merged-chr7-125477727-2	chr7	125477213	125478213	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360659, intron 2 of 7)	intron (NM_001360659, intron 2 of 7)	13829.0	NM_001360659	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	4.0	11.5	0.5	0.0	0.0	3.5
Merged-chr3-13988982-2	chr3	13988482	13989482	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163329, intron 1 of 7)	L1Md_F2|LINE|L1	42677.0	NM_001163330	76897.0	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-29955460-2	chr5	29954960	29955960	+	701.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57654.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131417433-2	chr2	131416933	131417933	+	701.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64541.0	NM_178607	51902.0	Mm.477523	NM_178607	ENSMUSG00000048911	Rnf24	2810473M14Rik|4930505A13Rik|AI317164|C86507|D2Ertd504e	ring finger protein 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92402339-2	chr16	92401839	92402839	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-2261.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62598619-2	chr11	62598119	62599119	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011706, intron 15 of 15)	intron (NM_011706, intron 15 of 15)	-4258.0	NR_030738	69221.0	Mm.270874	NR_030738	ENSMUSG00000086841	2410006H16Rik	-	RIKEN cDNA 2410006H16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126843513-2	chr8	126843013	126844013	+	701.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5507.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31092886-2	chr5	31092386	31093386	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347323, intron 2 of 8)	CpG	641.0	NM_011773	22784.0	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166820832-2	chr2	166820332	166821332	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085495, intron 1 of 38)	MTE2a|LTR|ERVL-MaLR	15251.0	NM_001085495	99371.0	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-28590796-2	chr2	28590296	28591296	+	701.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7517.0	NM_001290484	70239.0	Mm.274120	NM_148928	ENSMUSG00000026816	Gtf3c5	2700084A09Rik|TFIIIC63|TFiiiC2-63	general transcription factor IIIC, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-59460793-2	chr16	59460279	59461279	+	701.5	f0_c57.idr|f1_c57bl6.idr	intron (NM_001081190, intron 8 of 8)	B3A|SINE|B2	8459.0	NR_040568	75636.0	Mm.490522	NR_040568	ENSMUSG00000099983	1700022E09Rik	-	RIKEN cDNA 1700022E09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97399604-2	chr11	97399104	97400104	+	701.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	37053.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	0.0	0.0	0.0	0.0	0.0	3.5
Merged-chr9-32700973-2	chr9	32700495	32701495	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038642, intron 1 of 6)	intron (NM_001038642, intron 1 of 6)	4953.0	NM_001038642	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr9-119580804-2	chr9	119580310	119581310	+	701.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1794.0	NM_021544	20271.0	Mm.103584	NM_021544	ENSMUSG00000032511	Scn5a	Nav1.5|Nav1.5c|SkM1|SkM2|mH1	sodium channel, voltage-gated, type V, alpha	protein-coding	4.0	0.0	1.0	0.0	1.0	0.0
Merged-chr15-84946094-2	chr15	84945594	84946594	+	701.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033273, exon 10 of 10)	3' UTR (NM_001033273, exon 10 of 10)	5529.0	NR_037206	100526461.0		NR_037206	ENSMUSG00000080441	Mir1249	mir-1249|mmu-mir-1249	microRNA 1249	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-90697617-2	chr11	90697130	90698130	+	701.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2A|LINE|L1	-10029.0	NM_001357543	71943.0	Mm.167868	NM_028011	ENSMUSG00000020541	Tom1l1	2310045L10Rik|C80573|Srcasm	target of myb1-like 1 (chicken)	protein-coding	0.0	2.5	0.0	0.0	3.5	1.5
Merged-chr6-73697304-3	chr6	73696791	73697791	+	701.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-226270.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	0.0	1.5	0.0	0.0	0.0	2.0
Merged-chr5-9187963-3	chr5	9187456	9188456	+	701.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12B|LTR|ERVK	-26180.0	NR_152861	23857.0	Mm.22480	NM_011806	ENSMUSG00000042508	Dmtf1	Dimp|Dmp1	cyclin D binding myb-like transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-10402843-2	chr8	10402343	10403343	+	701.416687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001319151, intron 14 of 34)	intron (NM_001319151, intron 14 of 34)	248932.0	NM_001319151	244281.0	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84064652-4	chr3	84064177	84065177	+	701.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24516.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	0.0	0.0	0.5	0.0	0.5	3.0
Merged-chr17-84104330-2	chr17	84103880	84104880	+	701.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_B_Mam|LINE|RTE-X	25720.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115194262-3	chr5	115193766	115194766	+	701.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001310712, exon 1 of 6)	5' UTR (NM_001310712, exon 1 of 6)	115.0	NM_001310712	29867.0	Mm.38551	NM_013879	ENSMUSG00000029544	Cabp1	caldendrin	calcium binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8887337-3	chr10	8886811	8887811	+	701.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1241.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	32.0	72.0	35.5	21.5	39.5	36.0
Merged-chr6-30318595-2	chr6	30318095	30319095	+	701.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-14056.0	NM_001169576	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131253812-2	chr2	131253312	131254312	+	701.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR42-int|LTR|ERVK	-8196.0	NM_001355681	74450.0	Mm.101264	NM_153501	ENSMUSG00000037514	Pank2	4933409I19Rik|AI642621	pantothenate kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58693884-2	chr1	58693397	58694397	+	701.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175370, intron 1 of 14)	intron (NM_175370, intron 1 of 14)	-1452.0	NM_001347056	108812.0	Mm.442063	NM_175370	ENSMUSG00000047528	Als2cr12	4933405P16Rik|4933425F06Rik	amyotrophic lateral sclerosis 2 chromosome region 12	protein-coding	0.0	1.0	3.5	0.0	1.0	1.0
Merged-chr13-5859326-2	chr13	5858826	5859826	+	701.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1234.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32792817-1	chr19	32792317	32793317	+	701.333313	f0_balb.idr	intron (NM_008960, intron 3 of 8)	intron (NM_008960, intron 3 of 8)	35240.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	2.5	0.0	1.0	3.0	3.0	3.5
Merged-chr1-131139544-3	chr1	131139029	131140029	+	701.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1295.0	NM_145508	226419.0	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-5057089-3	chr10	5056591	5057591	+	701.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079686, intron 41 of 54)	intron (NM_001079686, intron 41 of 54)	11972.0	NM_022027	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-151733466-2	chr5	151732966	151733966	+	701.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-82258.0	NM_027009	69263.0	Mm.12553	NM_027009	ENSMUSG00000033970	Rfc3	2810416I22Rik|38kDa|AU022547|Recc3	replication factor C (activator 1) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45051080-3	chr7	45050594	45051594	+	701.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175022, intron 2 of 13)	intron (NM_175022, intron 2 of 13)	1787.0	NM_175022	233210.0	Mm.219137	NM_175022	ENSMUSG00000046574	Prr12	6720469B10|BC058674	proline rich 12	protein-coding	0.0	0.0	0.0	0.0	0.0	4.5
Merged-chr16-87575908-2	chr16	87575428	87576428	+	701.25	f0_balb.idr|f1_c57bl6.idr	intron (NM_144854, intron 3 of 4)	intron (NM_144854, intron 3 of 4)	22598.0	NM_144854	224419.0	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	1.5	0.0	0.0	3.5	3.0	2.0
Merged-chr8-27026566-2	chr8	27026066	27027066	+	701.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_153592, intron 2 of 11)	intron (NM_153592, intron 2 of 11)	2767.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120433816-2	chr8	120433316	120434316	+	701.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-55050.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94999095-2	chr8	94998595	94999595	+	701.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_018882, intron 1 of 13)	intron (NM_018882, intron 1 of 13)	14696.0	NM_018882	14766.0	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121395652-4	chr10	121395158	121396158	+	701.166687	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029364, exon 14 of 14)	3' UTR (NM_029364, exon 14 of 14)	30568.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	2.0	2.0	1.5	7.5	4.0	0.5
Merged-chr18-67500743-3	chr18	67500247	67501247	+	701.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176832, intron 9 of 13)	intron (NM_176832, intron 9 of 13)	35898.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34214756-2	chr10	34214256	34215256	+	701.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7205.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114687656-2	chr11	114687156	114688156	+	701.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 2 of 13)	L3|LINE|CR1	12188.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-3516644-2	chr10	3516153	3517153	+	701.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-23626.0	NM_027391	70337.0	Mm.24153	NM_027391	ENSMUSG00000019762	Iyd	0610009A07Rik|AI265638|Dehal1	iodotyrosine deiodinase	protein-coding	5.0	0.0	0.0	10.0	0.0	0.0
Merged-chr8-82356621-2	chr8	82356135	82357135	+	701.125	f0_balb.idr|f1_balb.idr	intron (NM_008357, intron 2 of 7)	intron (NM_008357, intron 2 of 7)	45951.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.0	3.0	1.0	3.5	0.0	4.0
Merged-chr1-46908709-3	chr1	46908203	46909203	+	701.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356417, intron 1 of 10)	intron (NM_001356417, intron 1 of 10)	17073.0	NM_001356417	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	2.0	7.0	0.5	4.0	0.0	0.0
Merged-chr9-60478159-3	chr9	60477662	60478662	+	701.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040426, intron 3 of 17)	intron (NM_001040426, intron 3 of 17)	32873.0	NM_001040426	207596.0	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38337438-3	chr6	38336930	38337930	+	701.099976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028864, intron 2 of 8)	B2_Mm2|SINE|B2	17173.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122889680-3	chr8	122889159	122890159	+	701.083313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037865, exon 10 of 14)	non-coding (NR_037865, exon 10 of 14)	41285.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5759125-3	chr11	5758622	5759622	+	701.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361588, intron 1 of 6)	Lx8b|LINE|L1	-3028.0	NR_015577	76508.0	Mm.260203	NR_015577	ENSMUSG00000083844	Ube2d-ps	1600028I17Rik|2210015D19Rik|AI596465	ubiquitin-conjugating enzyme E2D, pseudogene	ncRNA	14.0	16.0	7.5	12.0	13.0	7.5
Merged-chr10-99380285-3	chr10	99379782	99380782	+	701.044434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117051.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88185356-3	chr7	88184882	88185882	+	701.022217	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92703.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60817570-2	chr18	60817070	60818070	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011552, intron 21 of 24)	intron (NM_011552, intron 21 of 24)	5494.0	NR_039567	100628611.0		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-31052496-2	chr7	31051996	31052996	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194321, intron 5 of 7)	MIR|SINE|MIR	-1042.0	NM_022007	57780.0	Mm.41770	NM_022007	ENSMUSG00000036578	Fxyd7	1110035I01Rik	FXYD domain-containing ion transport regulator 7	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr17-35076205-2	chr17	35075705	35076705	+	701.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027366)	promoter-TSS (NM_027366)	-737.0	NM_027366	70274.0	Mm.250491	NM_027366	ENSMUSG00000013766	Ly6g6e	2310011I02Rik|G6e	lymphocyte antigen 6 complex, locus G6E	protein-coding	0.0	1.0	2.0	0.5	1.5	2.0
Merged-chr8-126735860-2	chr8	126735360	126736360	+	701.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113160.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr9-22157686-2	chr9	22157186	22158186	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082532, intron 1 of 1)	intron (NM_001082532, intron 1 of 1)	840.0	NM_001082532	66268.0	Mm.28924	NM_025457	ENSMUSG00000010607	Pigyl	1810008A14Rik|PIG-Y|Pigy	phosphatidylinositol glycan anchor biosynthesis, class Y-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138993954-2	chr5	138993454	138994454	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008808, intron 1 of 5)	CpG-11694	999.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100053421-2	chr15	100052921	100053921	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	14757.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94332023-3	chr16	94331520	94332520	+	701.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133229, intron 2 of 3)	intron (NM_133229, intron 2 of 3)	3598.0	NM_133229	170765.0	Mm.42604	NM_133229	ENSMUSG00000022941	Ripply3	Dscr6	ripply transcriptional repressor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-74008483-2	chr13	74007983	74008983	+	701.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182839)	promoter-TSS (NM_182839)	-936.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45802120-2	chr4	45801620	45802620	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028270, intron 1 of 1)	intron (NM_028270, intron 1 of 1)	3098.0	NM_028270	72535.0	Mm.331583	NM_028270	ENSMUSG00000035561	Aldh1b1	2700007F14Rik	aldehyde dehydrogenase 1 family, member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19399977-2	chr7	19399477	19400477	+	701.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286038)	promoter-TSS (NM_001286038)	-56.0	NM_146182	232943.0	Mm.213403	NM_146182	ENSMUSG00000040714	Klc3	BC017147|Klct	kinesin light chain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16298673-2	chr7	16298173	16299173	+	701.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10910.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-59610947-2	chr19	59610406	59611406	+	701.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117770.0	NR_045308	72647.0	Mm.410849	NR_045308	ENSMUSG00000100119	2700089I24Rik	-	RIKEN cDNA 2700089I24 gene	ncRNA	0.0	0.0	7.0	0.0	0.0	7.5
Merged-chr11-116857357-2	chr11	116856725	116857725	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178620, intron 2 of 12)	intron (NM_178620, intron 2 of 12)	3225.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	4.0	9.0	0.5	5.5	0.0	3.5
Merged-chr1-55383356-3	chr1	55382879	55383879	+	701.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19910.0	NM_029267	75388.0	Mm.483408	NM_029267	ENSMUSG00000025977	Boll	4930554P13Rik|4930597B14Rik	boule homolog, RNA binding protein	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr2-4402137-1	chr2	4401637	4402637	+	701.0	f0_balb.idr	intron (NM_001177843, intron 1 of 23)	intron (NM_001177843, intron 1 of 23)	1161.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-90677833-2	chr15	90677333	90678333	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033851, intron 1 of 3)	intron (NM_001033851, intron 1 of 3)	1555.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	0.5	9.0	9.0	12.5	7.5	4.5
Merged-chr12-69130100-2	chr12	69129600	69130600	+	701.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29086.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	1.0	16.0	5.0	3.0	4.0	3.5
Merged-chr5-90879346-2	chr5	90878802	90879802	+	701.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11943.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0.0	1.5	0.0	0.0	1.5	1.0
Merged-chr17-5690958-2	chr17	5690458	5691458	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 3 of 8)	intron (NM_146073, intron 3 of 8)	-107699.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164526072-1	chr2	164525572	164526572	+	701.0	f0_balb.idr	Intergenic	RLTR44-int|LTR|ERVK	-24458.0	NR_152178	670507.0	Mm.404686	NR_152178		Gm14317	-	predicted gene 14317	ncRNA	2.0	1.5	0.5	2.0	2.0	3.0
Merged-chr7-27401957-1	chr7	27401457	27402457	+	701.0	f1_balb.idr	intron (NM_032610, intron 17 of 35)	B1F|SINE|Alu	-5404.0	NM_001199236	80297.0	Mm.459123	NM_032610	ENSMUSG00000011751	Sptbn4	1700022P15Rik|5830426A08Rik|ROSA62|SpbIV|Spnb4|dyn|lnd|nmf261|nmf379|qv	spectrin beta, non-erythrocytic 4	protein-coding	1.5	4.5	0.5	0.0	4.0	3.5
Merged-chr17-31433717-2	chr17	31433217	31434217	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008804, intron 4 of 18)	PB1D10|SINE|Alu	47483.0	NM_001163748	18585.0	Mm.10812	NM_008804	ENSMUSG00000041119	Pde9a	PDE9A1	phosphodiesterase 9A	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr1-176064374-2	chr1	176063874	176064874	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357846, intron 3 of 8)	(TG)n|Simple_repeat|Simple_repeat	144045.0	NM_001290692	226720.0	Mm.11282	NM_001290692	ENSMUSG00000104158	Becn2	Beclin-2|Gm104	beclin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-95268191-2	chr1	95267691	95268691	+	701.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45437.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83724011-2	chr8	83723511	83724511	+	701.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106188)	promoter-TSS (NR_106188)	-27.0	NR_106188	102465897.0		NR_106188	ENSMUSG00000098465	Mir1668	Gm27590|mmu-mir-1668	microRNA 1668	ncRNA	0.0	0.5	5.5	4.5	0.0	0.0
Merged-chr2-61514543-2	chr2	61514043	61515043	+	701.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64043.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-14100693-2	chr14	14100178	14101178	+	701.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_139227, exon 11 of 12)	exon (NM_139227, exon 11 of 12)	20226.0	NM_025550	66413.0	Mm.27591	NM_025550	ENSMUSG00000021737	Psmd6	2400006A19Rik	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	protein-coding	0.0	1.5	4.0	0.0	0.0	0.0
Merged-chr16-11601476-2	chr16	11600976	11601976	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 15 of 20)	RSINE1|SINE|B4	-178226.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33892868-1	chr17	33892368	33893368	+	701.0	f1_c57bl6.idr	Intergenic	RLTR42-int|LTR|ERVK	-2235.0	NM_001195298	100502766.0	Mm.335713	NM_001195298	ENSMUSG00000079553	Kifc1	100042970|Gm4137|HSET|KNSL2|Kifc5a|Knsl2a|Tctex-7|Tctex-7A|Tctex7|Tctex7a	kinesin family member C1	protein-coding	2.0	0.0	2.0	2.0	0.0	4.5
Merged-chr10-128033520-2	chr10	128033020	128034020	+	701.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1826.0	NM_013608	17938.0	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72802739-2	chr5	72802239	72803239	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	-49962.0	NM_001122754	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74854350-2	chr17	74853850	74854850	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_152817, intron 16 of 19)	B4A|SINE|B4	136600.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr4-81745676-1	chr4	81745176	81746176	+	701.0	f0_balb.idr	Intergenic	Intergenic	-258663.0	NR_030570	100124446.0		NR_030570	ENSMUSG00000077941	Mir466h	Mirn466h	microRNA 466h	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-34673759-1	chr12	34673259	34674259	+	701.0	f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	B3|SINE|B2	-144870.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	41.5	61.0	65.0	35.0	45.5	33.5
Merged-chr4-117884319-1	chr4	117883819	117884819	+	701.0	f1_balb.idr	promoter-TSS (NM_001253381)	promoter-TSS (NM_001253381)	-843.0	NM_001253381	53418.0	Mm.123843	NM_017377	ENSMUSG00000028541	B4galt2	Ggtb2	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2	protein-coding	0.0	0.5	0.0	0.0	0.0	3.0
Merged-chr4-140982407-2	chr4	140981907	140982907	+	701.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4466.0	NM_029097	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	3.5	6.5	25.5	7.0	15.5	6.0
Merged-chr11-116488951-2	chr11	116488451	116489451	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026364, intron 1 of 9)	B2_Mm2|SINE|B2	1395.0	NM_026364	67763.0	Mm.25125	NM_026364	ENSMUSG00000015869	Prpsap1	5730409F23Rik|PAP39	phosphoribosyl pyrophosphate synthetase-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120251387-1	chr1	120250887	120251887	+	701.0	f0_balb.idr	intron (NM_001085409, intron 2 of 5)	intron (NM_001085409, intron 2 of 5)	13893.0	NM_133186	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89374332-2	chr3	89373832	89374832	+	701.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-9079.0	NM_029974	77772.0	Mm.164013	NM_029974	ENSMUSG00000042672	Dcst1	A330106H01Rik	DC-STAMP domain containing 1	protein-coding	1.0	13.0	2.0	0.0	9.0	2.5
Merged-chr6-12592731-2	chr6	12592231	12593231	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164805, intron 1 of 26)	RMER13B|LTR|ERVK	156522.0	NM_001164805	330267.0	Mm.11989	NM_001164805	ENSMUSG00000032625	Thsd7a	Gm837	thrombospondin, type I, domain containing 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86759276-2	chr11	86758776	86759776	+	701.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1709.0	NM_001356393	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107777236-1	chr4	107776736	107777736	+	701.0	f0_balb.idr	Intergenic	Intergenic	-25023.0	NR_033496	16975.0	Mm.442134	NM_053073	ENSMUSG00000028613	Lrp8	4932703M08Rik|AA921429|AI848122|ApoER2|Lr8b	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	protein-coding	1.5	0.5	5.5	5.5	0.0	6.0
Merged-chr8-126550011-1	chr8	126549511	126550511	+	701.0	f1_balb.idr	Intergenic	RLTR31D_MM|LTR|ERVK	43425.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.0	2.0	1.5	0.0	2.0	0.0
Merged-chr13-49422198-2	chr13	49421698	49422698	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276399, intron 1 of 12)	intron (NM_001276399, intron 1 of 12)	584.0	NM_001276399	75678.0	Mm.390586	NM_199056	ENSMUSG00000021385	Ippk	1810043M15Rik|InsP6	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136102341-2	chr5	136101841	136102841	+	701.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133914, exon 13 of 21)	exon (NM_133914, exon 13 of 21)	-3181.0	NR_106002	102465626.0		NR_106002	ENSMUSG00000099003	Mir7035	Gm27661|mmu-mir-7035	microRNA 7035	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45721411-2	chr7	45720899	45721899	+	701.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009077)	TTS (NM_009077)	179.0	NM_001033170	73813.0	Mm.322591	NM_001033170	ENSMUSG00000054161	Fam83e	4930403C10Rik	family with sequence similarity 83, member E	protein-coding	1.5	0.0	6.0	0.0	0.0	0.0
Merged-chr9-107525817-2	chr9	107525317	107526317	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001174048, intron 30 of 37)	intron (NM_001174048, intron 30 of 37)	-8128.0	NM_019704	56395.0	Mm.260153	NM_019704	ENSMUSG00000010045	Tmem115	C78915|Pl6|Pp6	transmembrane protein 115	protein-coding	1.5	0.0	0.0	2.0	0.0	0.0
Merged-chr13-58637787-2	chr13	58637287	58638287	+	701.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26910.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110104309-2	chr5	110103809	110104809	+	701.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145147, exon 9 of 10)	exon (NM_145147, exon 9 of 10)	3750.0	NM_001281812	403178.0	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35919492-1	chr17	35918992	35919992	+	701.0	f0_balb.idr	5' UTR (NM_001357740, exon 1 of 19)	5' UTR (NM_001357740, exon 1 of 19)	220.0	NM_001357740	52040.0	Mm.29385	NM_175934	ENSMUSG00000039220	Ppp1r10	2610025H06Rik|Cat53|D17Ertd808e|Fb19|Pnuts	protein phosphatase 1, regulatory subunit 10	protein-coding	9.0	25.0	11.0	5.0	21.5	17.5
Merged-chr15-95819830-2	chr15	95819330	95820330	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	RMER17B|LTR|ERVK	10242.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-40459120-1	chr18	40458620	40459620	+	701.0	f0_c57.idr	intron (NM_026135, intron 1 of 1)	intron (NM_026135, intron 1 of 1)	200759.0	NM_026135	383348.0	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103375750-3	chr14	103375243	103376243	+	701.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-28943.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75093249-1	chr8	75092749	75093749	+	701.0	f1_balb.idr	promoter-TSS (NM_010442)	promoter-TSS (NM_010442)	-369.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	56.0	207.5	109.0	48.0	130.5	70.5
Merged-chr7-99268407-2	chr7	99267907	99268907	+	701.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001043355)	promoter-TSS (NM_001043355)	61.0	NM_001043355	17760.0	Mm.154087	NM_010837	ENSMUSG00000055407	Map6	2810411E12Rik|Map-6|Mtap6|STOP	microtubule-associated protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27238275-2	chr3	27237775	27238775	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 3 of 4)	intron (NM_178772, intron 3 of 4)	55271.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-181853221-2	chr1	181852721	181853721	+	701.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10820.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-10415425-2	chr10	10414925	10415925	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 11 of 36)	L1Md_F2|LINE|L1	56889.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-71821271-2	chr16	71820771	71821771	+	701.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	413056.0	NR_131116	319533.0	Mm.373754	NR_131115		8030451O07Rik	-	RIKEN cDNA 8030451O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141473994-1	chr4	141473494	141474494	+	701.0	f1_balb.idr	exon (NM_019763, exon 12 of 16)	exon (NM_019763, exon 12 of 16)	29321.0	NM_009541	22642.0	Mm.389590	NM_009541	ENSMUSG00000006215	Zbtb17	AA589413|Lp-1|Miz1|Zfp100|mZ13	zinc finger and BTB domain containing 17	protein-coding	0.0	6.0	0.5	0.0	0.0	2.0
Merged-chr2-103447272-2	chr2	103446772	103447772	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010125, intron 4 of 6)	intron (NM_010125, intron 4 of 6)	23204.0	NM_010125	13711.0	Mm.20888	NM_010125	ENSMUSG00000027186	Elf5	ESE-2|ESE-5|ESE-5.	E74-like factor 5	protein-coding	0.0	0.0	0.0	1.5	4.0	0.0
Merged-chr2-31784825-2	chr2	31784325	31785325	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001283046, intron 5 of 11)	intron (NM_001283046, intron 5 of 11)	24652.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160724053-1	chr2	160723553	160724553	+	701.0	f1_c57bl6.idr	Intergenic	Intergenic	-7257.0	NM_021280	18803.0	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr7-19023068-1	chr7	19022568	19023568	+	701.0	f1_c57bl6.idr	intron (NM_008260, intron 1 of 1)	intron (NM_008260, intron 1 of 1)	471.0	NM_008260	15377.0	Mm.42260	NM_008260	ENSMUSG00000040891	Foxa3	Hnf-3g|Hnf3g|Tcf-3g|Tcf3g	forkhead box A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69215178-2	chr12	69214678	69215678	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011133, intron 6 of 18)	intron (NM_011133, intron 6 of 18)	13012.0	NM_011133	18974.0	Mm.9199	NM_011133	ENSMUSG00000020974	Pole2	-	polymerase (DNA directed), epsilon 2 (p59 subunit)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110659022-1	chr9	110658522	110659522	+	701.0	f1_balb.idr	intron (NM_028312, intron 1 of 6)	RMER4B|LTR|ERVK	2519.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	39.5	25.5	17.0	0.0	19.5	15.0
Merged-chr1-164315468-2	chr1	164314968	164315968	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178071, intron 3 of 9)	B3|SINE|B2	7796.0	NM_138314	171567.0	Mm.219428	NM_138314	ENSMUSG00000026575	Nme7	D530024H21Rik|Nm23-M7|Nm23-r7	NME/NM23 family member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19445341-2	chr7	19444841	19445841	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172279, intron 6 of 16)	intron (NM_172279, intron 6 of 16)	13153.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-63245033-2	chr10	63244533	63245533	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359484, intron 1 of 22)	B3|SINE|B2	1236.0	NM_001359484	67345.0	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-174343032-2	chr2	174342532	174343532	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077507, intron 4 of 10)	intron (NM_001077507, intron 4 of 10)	12943.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127579338-2	chr3	127578838	127579838	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_197997, intron 8 of 25)	L2a|LINE|L2	25849.0	NM_197997	71643.0	Mm.274884	NM_197997	ENSMUSG00000051278	Zgrf1	4930422G04Rik|AI448607	zinc finger, GRF-type containing 1	protein-coding	0.0	1.5	1.0	0.0	1.5	1.0
Merged-chr4-139616276-3	chr4	139615719	139616719	+	700.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205173, intron 8 of 8)	intron (NM_001205173, intron 8 of 8)	-6675.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	27.5	145.0	91.5	37.5	61.0	47.5
Merged-chr4-116135296-2	chr4	116134796	116135796	+	700.900024	f1_balb.idr|f1_c57bl6.idr	intron (NR_131048, intron 1 of 2)	intron (NR_131048, intron 1 of 2)	9320.0	NM_026547	68075.0	Mm.132803	NM_026547	ENSMUSG00000028701	Lurap1	1520402A15Rik|Lrp35a	leucine rich adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126894941-3	chr7	126894439	126895439	+	700.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026827, intron 3 of 5)	L2c|LINE|L2	3339.0	NM_026827	68742.0	Mm.248646	NM_026827	ENSMUSG00000060538	Tmem219	1110032O16Rik|2900045G02Rik|IGFBP-3R	transmembrane protein 219	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-77407728-3	chr5	77407247	77408247	+	700.883362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008048, exon 1 of 5)	exon (NM_008048, exon 1 of 5)	298.0	NM_001159518	29817.0	Mm.233470	NM_008048	ENSMUSG00000036256	Igfbp7	AGM|Fstl2|Mac25	insulin-like growth factor binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-79275691-2	chr7	79275191	79276191	+	700.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_018811, intron 1 of 10)	intron (NM_018811, intron 1 of 10)	2425.0	NM_018811	54608.0	Mm.365490	NM_018811	ENSMUSG00000039202	Abhd2	2210009N18Rik|LABH2|Labh-2	abhydrolase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-3020170-2	chr9	3019655	3020655	+	700.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	18588.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-89126693-3	chr7	89126199	89127199	+	700.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	212088.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122720131-3	chr6	122719638	122720638	+	700.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12573.0	NM_001289828	71950.0	Mm.6047	NM_028016	ENSMUSG00000012396	Nanog	2410002E02Rik|ENK|ecat4	Nanog homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131462802-3	chr1	131462298	131463298	+	700.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	64563.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-74795008-3	chr5	74794534	74795534	+	700.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92131.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	0.5	0.0	0.5	2.0	0.0	0.0
Merged-chr10-93272080-3	chr10	93271595	93272595	+	700.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001322265, intron 2 of 4)	intron (NM_001322265, intron 2 of 4)	39064.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	3.0	8.0	2.5	5.0	12.0	9.0
Merged-chr3-106448796-2	chr3	106448296	106449296	+	700.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33635.0	NM_001093754	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	0.0	1.5	0.0	0.0	0.0	1.5
Merged-chr19-17396954-3	chr19	17396402	17397402	+	700.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019437, intron 2 of 3)	URR1B|DNA|hAT-Charlie	2859.0	NM_019437	54391.0	Mm.7013	NM_019437	ENSMUSG00000024712	Rfk	0610038L10Rik|AF031381|KOI-4	riboflavin kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-95112240-2	chr6	95111721	95112721	+	700.674988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5410.0	NR_153843	102634268.0	Mm.396160	NR_153843		Kbtbd8os	1700010K10Rik	kelch repeat and BTB (POZ) domain containing 8, opposite strand	ncRNA	13.0	28.5	18.0	3.5	13.5	3.0
Merged-chr17-57329352-2	chr17	57328852	57329852	+	700.666687	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011691)	TTS (NM_011691)	-29334.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91669399-3	chr6	91668919	91669919	+	700.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-14648.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55446776-3	chr12	55446257	55447257	+	700.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45890.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17485100-1	chr10	17484600	17485600	+	700.666687	f0_balb.idr	Intergenic	Intergenic	-238128.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4119044-2	chr19	4118544	4119544	+	700.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_016666, intron 2 of 6)	L2b|LINE|L2	2531.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-44223685-1	chr5	44223185	44224185	+	700.666687	f0_balb.idr	intron (NM_173764, intron 1 of 13)	intron (NM_173764, intron 1 of 13)	2921.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	0.0	4.5	0.0	0.0	0.0	0.0
Merged-chr4-41407573-3	chr4	41407092	41408092	+	700.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024241, intron 6 of 12)	ORR1E|LTR|ERVL-MaLR	55629.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34760252-2	chr6	34759752	34760752	+	700.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145575, intron 6 of 11)	intron (NM_145575, intron 6 of 11)	-20180.0	NM_001289658	76223.0	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-41764283-2	chr5	41763783	41764783	+	700.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007524)	promoter-TSS (NM_007524)	-63.0	NM_007524	12020.0	Mm.2530	NM_007524	ENSMUSG00000049691	Nkx3-2	Bapx1|NKX3.2|Nkx-3.2	NK3 homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65683128-2	chr18	65682655	65683655	+	700.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361052, intron 7 of 8)	intron (NM_001361052, intron 7 of 8)	-15113.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	29.0	59.0	55.0	25.5	133.0	87.0
Merged-chr11-101965180-2	chr11	101964680	101965680	+	700.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_024449, intron 1 of 1)	intron (NM_024449, intron 1 of 1)	1835.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-30016769-2	chr11	30016269	30017269	+	700.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 2 of 41)	RMER13A1|LTR|ERVK	9264.0	NM_146016	237711.0	Mm.445271	NM_146016	ENSMUSG00000044072	Eml6	2900083P10Rik|C230094A16Rik|EMAP-6	echinoderm microtubule associated protein like 6	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr16-4882997-2	chr16	4882497	4883497	+	700.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-3103.0	NM_001357062	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104403778-3	chr8	104403277	104404277	+	700.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-7970.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78010607-2	chr10	78010107	78011107	+	700.625	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008826)	promoter-TSS (NM_008826)	-800.0	NM_001358793	18641.0	Mm.269649	NM_008826	ENSMUSG00000020277	Pfkl	AA407869|ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver, B-type	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-178013495-4	chr2	178013004	178014004	+	700.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-9780.0	NM_001177400	626848.0	Mm.422604	NM_001177399	ENSMUSG00000074519	Zfp971	Etohi1	zinc finger protein 971	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69516854-3	chr11	69516347	69517347	+	700.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 8 of 85)	intron (NM_001081330, intron 8 of 85)	32261.0	NM_001081330	327954.0	Mm.247478	NM_177617	ENSMUSG00000005237	Dnah2	2900022L05Rik|4930564A01|D130094J20|D330014H01Rik|Dnahc2|Dnhd3	dynein, axonemal, heavy chain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116072740-3	chr3	116072231	116073231	+	700.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56957.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	2.0	11.0	3.0	9.5	17.5	5.5
Merged-chr2-166066160-2	chr2	166065660	166066660	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 18 of 22)	intron (NM_008679, intron 18 of 22)	73523.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36098581-2	chr1	36098081	36099081	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	30181.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3530279-2	chr4	3529779	3530779	+	700.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6811.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	9.0	10.5	10.0	2.0	28.5	1.5
Merged-chr1-16638491-2	chr1	16637991	16638991	+	700.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18374.0	NM_026456	67923.0	Mm.289248	NM_026456	ENSMUSG00000079658	Eloc	2610043E24Rik|2610301I15Rik|AA407206|AI987979|AW049146|Tceb1	elongin C	protein-coding	0.0	4.5	2.0	0.0	0.0	3.0
Merged-chr6-37722042-1	chr6	37721542	37722542	+	700.5	f0_c57.idr	Intergenic	RLTR49|LTR|ERVK	-148769.0	NM_001272064	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35032484-2	chr7	35031984	35032984	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 12 of 14)	intron (NM_008820, intron 12 of 14)	24082.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5750993-2	chr19	5750494	5751494	+	700.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008520, exon 13 of 28)	exon (NM_008520, exon 13 of 28)	10090.0	NM_008520	16998.0	Mm.182396	NM_008520	ENSMUSG00000024940	Ltbp3	Ltbp2|mFLJ00070	latent transforming growth factor beta binding protein 3	protein-coding	2.5	0.0	1.5	2.5	1.0	0.0
Merged-chr1-133178804-2	chr1	133178304	133179304	+	700.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47638.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31055678-2	chr3	31055178	31056178	+	700.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16712.0	NR_105975	102465610.0		NR_105975	ENSMUSG00000098890	Mir7008	Gm27752|mmu-mir-7008	microRNA 7008	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62000562-2	chr15	62000062	62001062	+	700.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15221.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69577763-2	chr11	69577263	69578263	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144824, intron 2 of 9)	intron (NM_144824, intron 2 of 9)	1561.0	NM_144824	216853.0	Mm.31586	NM_144824	ENSMUSG00000041346	Wrap53	BC021790|Wdr79	WD repeat containing, antisense to Trp53	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37889043-2	chr13	37888543	37889543	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 2 of 9)	intron (NM_001039188, intron 2 of 9)	172.0	NM_001177869	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31062775-6	chr3	31062265	31063265	+	700.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	23799.0	NR_105975	102465610.0		NR_105975	ENSMUSG00000098890	Mir7008	Gm27752|mmu-mir-7008	microRNA 7008	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99082978-2	chr7	99082478	99083478	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 5 of 14)	intron (NM_178635, intron 5 of 14)	58166.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0.0	6.0	0.0	0.0	0.0	3.0
Merged-chr10-39067160-4	chr10	39066661	39067661	+	700.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010681, intron 16 of 37)	B1F1|SINE|Alu	66739.0	NM_001359442	66337.0	Mm.45187	NM_183254	ENSMUSG00000051736	Fam229b	1700025K23Rik	family with sequence similarity 229, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19219618-4	chr3	19219170	19220170	+	700.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045575, exon 9 of 9)	non-coding (NR_045575, exon 9 of 9)	31375.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	0.0	8.5	9.5	7.0	14.5	9.5
Merged-chr2-158162440-2	chr2	158161940	158162940	+	700.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16048.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118686604-2	chr9	118686103	118687103	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 13 of 27)	intron (NM_133721, intron 13 of 27)	-25089.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.5	3.0	3.0	2.5	6.5	6.0
Merged-chr2-144290957-2	chr2	144290457	144291457	+	700.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	20053.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-81323614-2	chr5	81323114	81324114	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359826, intron 4 of 24)	intron (NM_001359826, intron 4 of 24)	302021.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88309309-2	chr1	88308809	88309809	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134252, intron 2 of 26)	Lx5c|LINE|L1	2597.0	NM_134252	171382.0	Mm.218753	NM_134252	ENSMUSG00000036251	Trpm8	CMR1|LTRPC6|LTrpC-6|TRPP8|Trp-p8	transient receptor potential cation channel, subfamily M, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-159234228-2	chr1	159233728	159234728	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011931, intron 1 of 19)	B1_Mus1|SINE|Alu	2028.0	NM_011931	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	9.0	15.5	13.0	9.5	8.5	11.5
Merged-chr11-70510313-2	chr11	70509813	70510813	+	700.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029360, exon 3 of 5)	exon (NM_029360, exon 3 of 5)	4303.0	NM_001013607	327956.0	Mm.244514	NM_001013607	ENSMUSG00000020830	Vmo1	Gm741	vitelline membrane outer layer 1 homolog (chicken)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-76137679-2	chr5	76137179	76138179	+	700.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-2594.0	NM_020611	57357.0	Mm.289446	NM_020611	ENSMUSG00000029233	Srd5a3	1110025P14Rik|A430076C09|AV364670|AW987574|D730040M03Rik|H5ar|S5AR 3|Srd5a2l	steroid 5 alpha-reductase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54949255-2	chr13	54948755	54949755	+	700.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311128)	promoter-TSS (NM_001311128)	-156.0	NM_153131	107448.0	Mm.23573	NM_153131	ENSMUSG00000025876	Unc5a	Unc5h1|mKIAA1976	unc-5 netrin receptor A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27921413-2	chr15	27920913	27921913	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	104435.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109706454-2	chr8	109705954	109706954	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286393, intron 2 of 7)	intron (NM_001286393, intron 2 of 7)	435.0	NM_029468	75871.0	Mm.180410	NM_029468	ENSMUSG00000031728	Zfp821	4930566A11Rik|Znf821	zinc finger protein 821	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-116981046-2	chr8	116980546	116981546	+	700.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026572)	TTS (NM_026572)	-2087.0	NM_001357255	69528.0	Mm.272846	NM_027103	ENSMUSG00000031847	1700030J22Rik	-	RIKEN cDNA 1700030J22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-72975879-2	chr2	72975379	72976379	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001018042, intron 3 of 6)	intron (NM_001018042, intron 3 of 6)	3402.0	NM_001098425	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-104850193-2	chr2	104849693	104850693	+	700.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178695)	promoter-TSS (NM_178695)	-343.0	NM_178695	228413.0	Mm.259609	NM_178695	ENSMUSG00000027171	Prrg4	9930111I18Rik|TMG4	proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)	protein-coding	6.0	1.5	2.0	7.5	1.5	3.5
Merged-chr6-100883414-2	chr6	100882914	100883914	+	700.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	49776.0	NM_182939	232314.0	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39409725-2	chr18	39409225	39410225	+	700.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008173)	TTS (NM_008173)	77520.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-52086848-2	chr16	52086348	52087348	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	55299.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123938416-2	chr9	123937916	123938916	+	700.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30276.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24502633-2	chr17	24502133	24503133	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027937, intron 16 of 19)	PB1D10|SINE|Alu	13850.0	NM_027937	268932.0	Mm.70989	NM_027937	ENSMUSG00000033597	Caskin1	3300002N10Rik|C130061I24|C630036E02Rik|mKIAA1306	CASK interacting protein 1	protein-coding	0.0	1.5	0.0	0.0	0.0	1.0
Merged-chr1-180762330-2	chr1	180761830	180762830	+	700.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36287.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-65279242-2	chr13	65278742	65279742	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178364, intron 1 of 7)	intron (NM_178364, intron 1 of 7)	388.0	NM_178364	170936.0	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding	37.0	20.5	32.5	5.5	48.5	21.0
Merged-chr12-98281557-2	chr12	98281057	98282057	+	700.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	12922.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-30855061-2	chr18	30854562	30855562	+	700.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	462066.0	NM_009065	19762.0	Mm.5163	NM_009065	ENSMUSG00000057455	Rit2	RIBA|Rin|Roc2	Ras-like without CAAX 2	protein-coding	0.0	2.5	0.5	1.0	8.0	0.0
Merged-chr2-152832093-2	chr2	152831593	152832593	+	700.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009743)	promoter-TSS (NM_009743)	-365.0	NM_009743	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0.0	4.0	0.0	0.0	7.0	0.5
Merged-chr7-31084314-1	chr7	31083814	31084814	+	700.5	f0_balb.idr	Intergenic	Intergenic	-7617.0	NM_008557	17178.0	Mm.263847	NM_008557	ENSMUSG00000057092	Fxyd3	Mat8	FXYD domain-containing ion transport regulator 3	protein-coding	8.5	4.5	9.5	6.5	12.0	9.0
Merged-chr14-54701521-4	chr14	54701018	54702018	+	700.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10656.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr15-85379372-2	chr15	85378872	85379872	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016843, intron 5 of 11)	intron (NM_016843, intron 5 of 11)	42991.0	NM_016843	54138.0	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95417012-2	chr11	95416512	95417512	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359107, intron 1 of 9)	intron (NM_001359107, intron 1 of 9)	2929.0	NM_001359107	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100119346-2	chr12	100118846	100119846	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008947, intron 7 of 9)	intron (NM_008947, intron 7 of 9)	7015.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-113713565-2	chr9	113713065	113714065	+	700.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-5306.0	NM_011052	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-38130297-1	chr3	38129797	38130797	+	700.5	f0_balb.idr	Intergenic	Intergenic	77822.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-35692435-2	chr3	35691935	35692935	+	700.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26272.0	NR_040748	625963.0	Mm.251506	NR_040748	ENSMUSG00000105662	Gm6639	-	predicted gene 6639	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4163967-2	chr12	4163467	4164467	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 2 of 21)	B1_Mus2|SINE|Alu	29814.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6493373-2	chr2	6492873	6493873	+	700.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	140637.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89772379-2	chr3	89771879	89772879	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_130957, intron 1 of 1)	intron (NR_130957, intron 1 of 1)	1021.0	NR_130957	74034.0	Mm.386816	NR_130957	ENSMUSG00000042579	4632404H12Rik	-	RIKEN cDNA 4632404H12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45566490-2	chr7	45565990	45566990	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025330, intron 8 of 8)	PB1D7|SINE|Alu	-3663.0	NM_009737	12036.0	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat(m)|Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29541192-2	chr6	29540692	29541692	+	700.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347079, exon 23 of 23)	3' UTR (NM_001347079, exon 23 of 23)	11910.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5252489-2	chr17	5251989	5252989	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 5 of 19)	intron (NM_001085355, intron 5 of 19)	166278.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24488871-4	chr17	24488367	24489367	+	700.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027937)	promoter-TSS (NM_027937)	84.0	NM_027937	268932.0	Mm.70989	NM_027937	ENSMUSG00000033597	Caskin1	3300002N10Rik|C130061I24|C630036E02Rik|mKIAA1306	CASK interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-48278780-3	chr4	48278296	48279296	+	700.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010569)	promoter-TSS (NM_010569)	793.0	NM_029572	76299.0	Mm.317701	NM_029572	ENSMUSG00000028343	Erp44	1110001E24Rik|AI849526|AL033348|Txndc4	endoplasmic reticulum protein 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84528943-4	chr2	84528457	84529457	+	700.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22084.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118242428-2	chr7	118241928	118242928	+	700.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001031814, intron 1 of 62)	intron (NM_001031814, intron 1 of 62)	1209.0	NM_001031814	233789.0	Mm.309053	NM_177180	ENSMUSG00000030655	Smg1	2610207I05Rik|5430435M13Rik|C130002K18Rik|mKIAA0421	SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22115681-2	chr16	22115181	22116181	+	700.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	47618.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55839327-3	chr19	55838844	55839844	+	700.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-55977.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133680377-3	chr4	133679895	133680895	+	700.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001080819, exon 20 of 20)	exon (NM_001080819, exon 20 of 20)	-7229.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124815746-2	chr6	124815246	124816246	+	700.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013700, intron 19 of 19)	intron (NM_013700, intron 19 of 19)	-1450.0	NM_009415	21991.0	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|TIM|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156306030-3	chr2	156305527	156306527	+	700.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172674, intron 17 of 17)	B2_Mm2|SINE|B2	-6446.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	1.0	6.0	0.0	4.5	0.0	1.0
Merged-chr6-28488386-3	chr6	28487892	28488892	+	700.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 1 of 23)	CR1_Mam|LINE|CR1	8044.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-142766274-3	chr2	142765769	142766769	+	700.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 12 of 26)	(A)n|Simple_repeat|Simple_repeat	135195.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94093611-3	chr8	94093093	94094093	+	700.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026116, intron 1 of 16)	intron (NM_026116, intron 1 of 16)	5218.0	NM_026116	67378.0	Mm.292107	NM_026116	ENSMUSG00000031755	Bbs2	2410125H22Rik|AI447581	Bardet-Biedl syndrome 2 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-129330671-2	chr7	129330171	129331171	+	700.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080963, intron 5 of 6)	intron (NM_001080963, intron 5 of 6)	73577.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160657981-2	chr2	160657481	160658481	+	700.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009408, intron 2 of 20)	B3|SINE|B2	12084.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-122247769-2	chr9	122247244	122248244	+	700.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271873, intron 11 of 12)	intron (NM_001271873, intron 11 of 12)	26284.0	NR_106185	102465896.0		NR_106185	ENSMUSG00000098922	Mir8106	Gm27594|mmu-mir-8106	microRNA 8106	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-53378305-2	chr10	53377805	53378805	+	700.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204983, intron 1 of 12)	intron (NM_001204983, intron 1 of 12)	1546.0	NM_001204983	100038725.0	Mm.441403	NM_001204983	ENSMUSG00000038594	Cep85l	Gm9766	centrosomal protein 85-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80024959-5	chr15	80024398	80025398	+	700.233337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10090.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	12.5	5.5	0.0	10.5	9.5	8.5
Merged-chr15-38458431-3	chr15	38457928	38458928	+	700.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32119.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141431239-3	chr4	141430740	141431740	+	700.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4865.0	NM_001033374	277744.0	Mm.33952	NM_001033374	ENSMUSG00000070637	Srarp	Gm694	steroid receptor associated and regulated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-149189495-2	chr6	149188995	149189995	+	700.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113424)	promoter-TSS (NM_001113424)	-783.0	NM_001113424	232566.0	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-14506908-3	chr19	14506406	14507406	+	700.155579	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302951, intron 8 of 19)	intron (NM_001302951, intron 8 of 19)	-68400.0	NR_003027	19862.0		NR_003027	ENSMUSG00000095132	Rnu6	-	U6 small nuclear RNA	snRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-81915773-3	chr12	81915266	81916266	+	700.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018814, intron 5 of 35)	intron (NM_018814, intron 5 of 35)	55736.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-106787563-4	chr14	106787069	106788069	+	700.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-301049.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-12024094-3	chr2	12023592	12024592	+	700.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	246339.0	NM_177268	320816.0	Mm.260201	NM_177268	ENSMUSG00000047909	Ankrd16	2810455F06Rik|AI646698|D430029B21Rik	ankyrin repeat domain 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135487746-2	chr5	135487246	135488246	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	57376.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113195287-2	chr6	113194787	113195787	+	700.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177763)	promoter-TSS (NM_177763)	97.0	NM_177763	269788.0	Mm.37943	NM_177763	ENSMUSG00000042873	Lhfpl4	1190004M23Rik|AI604880|B230384L07|mKIAA4027	lipoma HMGIC fusion partner-like protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75552350-2	chr11	75551850	75552850	+	700.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_039553)	TTS (NR_039553)	921.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102433436-1	chr12	102432936	102433936	+	700.0	f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	intron (NM_011175, intron 1 of 13)	6377.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	21.0	22.5	20.5	20.5	22.5	19.0
Merged-chr13-108998881-2	chr13	108998381	108999381	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 2 of 16)	intron (NM_011056, intron 2 of 16)	-325863.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11104999-2	chr8	11104499	11105499	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96569.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32252216-1	chr4	32251716	32252716	+	700.0	f1_c57bl6.idr	Intergenic	Intergenic	-165219.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	23.0	69.0	70.0	14.0	30.0	42.0
Merged-chr6-40618156-2	chr6	40617656	40618656	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4846.0	NM_001001451	387513.0	Mm.377920	NM_001001451	ENSMUSG00000058250	Tas2r138	T2R138|Tas2r38|mt2r31	taste receptor, type 2, member 138	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-110384927-1	chr8	110384427	110385427	+	700.0	f0_c57.idr	intron (NM_172916, intron 11 of 86)	B1_Mus1|SINE|Alu	117429.0	NR_105058	100861869.0	Mm.84499	NR_105058		Gm21283	-	predicted gene, 21283	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52585976-2	chr13	52585476	52586476	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198977, intron 1 of 13)	B3|SINE|B2	2539.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-68209177-2	chr7	68208677	68209677	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 17 of 20)	intron (NM_010513, intron 17 of 20)	55056.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46356482-2	chr19	46355982	46356982	+	700.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029186)	promoter-TSS (NM_029186)	-398.0	NM_029186	75146.0	Mm.159290	NM_029186	ENSMUSG00000025227	Mfsd13a	4930449A08Rik|4930538D17Rik|Tmem180	major facilitator superfamily domain containing 13a	protein-coding	0.0	3.5	0.0	0.0	3.5	0.0
Merged-chr18-61478952-2	chr18	61478452	61479452	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045419, intron 1 of 3)	intron (NR_045419, intron 1 of 3)	5655.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	1.0	0.0	0.0	0.5	0.0	1.0
Merged-chr2-167905094-2	chr2	167904594	167905594	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-27233.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152521529-2	chr1	152521029	152522029	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 16 of 17)	intron (NM_016846, intron 16 of 17)	103688.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86446181-2	chr17	86445681	86446681	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 2 of 14)	intron (NM_011104, intron 2 of 14)	-159003.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	0.0	4.0	2.5	0.5	5.0	2.0
Merged-chr13-19365834-1	chr13	19365334	19366334	+	700.0	f1_c57bl6.idr	intron (NM_001347485, intron 7 of 7)	intron (NM_001347485, intron 7 of 7)	29979.0	NM_024270	76205.0	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	6.0	6.5	6.5	21.5	2.0	8.5
Merged-chr11-85786501-2	chr11	85786001	85787001	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	-10821.0	NR_046194	78420.0	Mm.488197	NR_046194	ENSMUSG00000085514	Bcas3os2	9530048J24Rik	breast carcinoma amplified sequence 3 opposite strand 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91741666-2	chr16	91741166	91742166	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	MER21C|LTR|ERVL	12295.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98792332-2	chr11	98791832	98792832	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	-3184.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66139096-2	chr7	66138596	66139596	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081163, intron 2 of 2)	intron (NM_001081163, intron 2 of 2)	29581.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-64368423-3	chr14	64367922	64368922	+	700.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253715, intron 1 of 4)	intron (NM_001253715, intron 1 of 4)	48534.0	NM_001253716	110265.0	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94995009-2	chr11	94994509	94995509	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172261, intron 1 of 9)	intron (NM_172261, intron 1 of 9)	3797.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6637090-2	chr17	6636590	6637590	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16165.0	NR_028305	100040525.0	Mm.472852	NR_028305		Tmem181c-ps	100040596|Tmem181d-ps	transmembrane protein 181C, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20068577-2	chr11	20068094	20069094	+	700.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_146243, intron 8 of 8)	intron (NM_146243, intron 8 of 8)	44357.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	0.0	3.0	2.5	1.5	2.0	2.0
Merged-chr14-120277915-1	chr14	120277415	120278415	+	700.0	f0_balb.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	2246.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80947679-2	chr15	80947179	80948179	+	700.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009634)	promoter-TSS (NM_009634)	-811.0	NM_009634	11564.0	Mm.38151	NM_009634	ENSMUSG00000022407	Adsl	Adl|Asl	adenylosuccinate lyase	protein-coding	0.0	0.0	3.0	0.0	0.0	4.0
Merged-chr16-78218636-2	chr16	78218136	78219136	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36818.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148176811-2	chr4	148176311	148177311	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16143.0	NM_176848	230904.0	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	0.0	0.0	2.0	1.0	0.0	3.0
Merged-chr18-62156615-2	chr18	62156115	62157115	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23366.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143006510-2	chr7	143006010	143007010	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020286, intron 1 of 7)	intron (NM_020286, intron 1 of 7)	851.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88605523-2	chr3	88605023	88606023	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-10684.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	8.0	29.0	2.5	12.5	23.0	11.0
Merged-chr10-111105396-2	chr10	111104896	111105896	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59406.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78176441-2	chr15	78175941	78176941	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2333.0	NM_025931	67042.0	Mm.30191	NM_025931	ENSMUSG00000016637	Ift27	2600013G09Rik|Rabl4	intraflagellar transport 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-57597760-3	chr18	57597261	57598261	+	700.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311063, intron 5 of 5)	MTC|LTR|ERVL-MaLR	40824.0	NR_045360	70157.0	Mm.490532	NR_045360		2210409D07Rik	-	RIKEN cDNA 2210409D07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-18011312-2	chr5	18010812	18011812	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 5 of 7)	intron (NM_001081143, intron 5 of 7)	48742.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43605028-1	chr4	43604528	43605528	+	700.0	f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-20534.0	NM_001099314	100039672.0	Mm.415110	NM_001099314	ENSMUSG00000078719	Msmp	Psmp	microseminoprotein, prostate associated	protein-coding	9.0	0.5	0.0	1.0	0.0	0.0
Merged-chr7-98117352-2	chr7	98116852	98117852	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008663, intron 2 of 48)	intron (NM_008663, intron 2 of 48)	2141.0	NM_001256081	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	0.0	5.5	0.0	0.0	0.0	0.0
Merged-chr9-96481652-2	chr9	96481152	96482152	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2977.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102796602-1	chr2	102796102	102797102	+	700.0	f1_balb.idr	Intergenic	Intergenic	-49842.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	1.5	0.0	0.5	0.0	0.0	0.0
Merged-chr5-101981289-1	chr5	101980789	101981789	+	700.0	f1_balb.idr	intron (NM_172882, intron 4 of 66)	intron (NM_172882, intron 4 of 66)	88632.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	3.0	27.0	16.5	11.0	7.0	10.5
Merged-chr15-88818005-2	chr15	88817505	88818505	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142357, intron 1 of 9)	B1_Mus1|SINE|Alu	1313.0	NM_001142357	223774.0	Mm.41512	NM_145477	ENSMUSG00000035845	Alg12	ECM39	asparagine-linked glycosylation 12 (alpha-1,6-mannosyltransferase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81198769-2	chr10	81198269	81199269	+	700.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027120, exon 7 of 7)	3' UTR (NM_027120, exon 7 of 7)	3268.0	NM_027120	69564.0	Mm.437211	NM_027120	ENSMUSG00000004939	Nmrk2	2310015C21Rik|Itgb1bp3|Mibp	nicotinamide riboside kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-66816680-2	chr10	66816180	66817180	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	103704.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23833235-2	chr13	23832735	23833735	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6199.0	NM_001164743	105355.0	Mm.27038	NM_134069	ENSMUSG00000036083	Slc17a3	AW261723|Npt4	solute carrier family 17 (sodium phosphate), member 3	protein-coding	2.5	15.0	0.0	0.0	0.0	0.0
Merged-chr6-125098716-2	chr6	125098216	125099216	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346610, intron 2 of 38)	intron (NM_001346610, intron 2 of 38)	1692.0	NR_106012	102466272.0		NR_106012	ENSMUSG00000098762	Mir7045	Gm27758|mmu-mir-7045	microRNA 7045	ncRNA	2.0	0.0	1.0	1.0	1.5	5.0
Merged-chr13-15759260-2	chr13	15758772	15759772	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43358.0	NR_045507	71071.0	Mm.380845	NR_045507	ENSMUSG00000113960	4933412O06Rik	-	RIKEN cDNA 4933412O06 gene	ncRNA	0.0	0.0	3.0	0.0	0.0	3.0
Merged-chr2-61655912-2	chr2	61655412	61656412	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55782.0	NM_021526	59029.0	Mm.218198	NM_021526	ENSMUSG00000026914	Psmd14	2610312C03Rik|3200001M20Rik|AA986732|Pad1|Poh1|rpm11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31385378-2	chr2	31384878	31385878	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84892.0	NM_007494	11898.0	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3366223-2	chr19	3365723	3366723	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 8 of 18)	intron (NM_013495, intron 8 of 18)	-22634.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-75297050-3	chr4	75296552	75297552	+	700.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-18760.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45471998-2	chr7	45471498	45472498	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5100.0	NM_007527	12028.0	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166524638-2	chr2	166524138	166525138	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39884.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-73933846-2	chr16	73933346	73934346	+	700.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001358492, exon 21 of 27)	exon (NM_001358492, exon 21 of 27)	408221.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72050826-1	chr6	72050326	72051326	+	700.0	f0_balb.idr	Intergenic	Intergenic	-8298.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156045481-1	chr1	156044981	156045981	+	700.0	f1_balb.idr	intron (NM_172843, intron 2 of 6)	intron (NM_172843, intron 2 of 6)	4620.0	NM_022329	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	14.0	12.5	4.5	3.5	4.5	3.0
Merged-chr7-27654035-2	chr7	27653556	27654556	+	700.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028417, exon 1 of 3)	exon (NM_028417, exon 1 of 3)	132.0	NM_028417	73032.0	Mm.44095	NM_028417	ENSMUSG00000007944	Ttc9b	2900074C18Rik	tetratricopeptide repeat domain 9B	protein-coding	0.0	7.0	0.0	0.0	0.0	0.0
Merged-chr4-138318719-1	chr4	138318219	138319219	+	700.0	f1_c57bl6.idr	intron (NM_026880, intron 3 of 7)	intron (NM_026880, intron 3 of 7)	-2519.0	NR_105986	102466788.0		NR_105986	ENSMUSG00000099200	Mir7019	Gm27947|mmu-mir-7019	microRNA 7019	ncRNA	0.0	1.0	0.0	0.0	0.0	0.5
Merged-chr10-128336568-2	chr10	128336068	128337068	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1159.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	2.0	7.5	4.5	6.5	17.0	5.0
Merged-chr18-34955255-2	chr18	34954764	34955764	+	700.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_010481)	promoter-TSS (NM_010481)	-913.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	78.0	160.0	160.5	94.5	173.5	145.0
Merged-chr1-75425914-3	chr1	75425411	75426411	+	700.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085370, intron 29 of 38)	intron (NM_001085370, intron 29 of 38)	-10025.0	NM_133708	69080.0	Mm.23951	NM_133708	ENSMUSG00000033021	Gmppa	1810012N01Rik	GDP-mannose pyrophosphorylase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4752652-4	chr7	4752142	4753142	+	700.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172895)	TTS (NM_172895)	260.0	NM_183406	333182.0	Mm.29625	NM_183405	ENSMUSG00000051811	Cox6b2	1700067P11Rik|BC048670|COXVIB2	cytochrome c oxidase subunit VIb polypeptide 2	protein-coding	0.0	0.0	1.0	0.0	10.5	1.5
Merged-chr6-26559522-2	chr6	26559022	26560022	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	628096.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24472953-2	chr7	24472453	24473453	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011113, intron 5 of 6)	intron (NM_011113, intron 5 of 6)	-9070.0	NM_153112	260299.0	Mm.178322	NM_153112	ENSMUSG00000054793	Cadm4	Igdf4c|Igsf4c|Tsll2	cell adhesion molecule 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-9628681-2	chr15	9628181	9629181	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305042, intron 25 of 36)	intron (NM_001305042, intron 25 of 36)	-98805.0	NM_008372	16197.0	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88310947-1	chr7	88310447	88311447	+	700.0	f0_balb.idr	3' UTR (NM_009982, exon 7 of 7)	3' UTR (NM_009982, exon 7 of 7)	32862.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	15.5	34.0	14.0	13.0	28.5	28.5
Merged-chr10-79779385-2	chr10	79778885	79779885	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031380, intron 2 of 4)	intron (NM_031380, intron 2 of 4)	2111.0	NM_031380	83554.0	Mm.251710	NM_031380	ENSMUSG00000020325	Fstl3	E030038F23Rik|Flrg	follistatin-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34288539-2	chr19	34288039	34289039	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2120.0	NM_007987	14102.0	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	3.0	0.0	2.5	0.0	0.0	2.5
Merged-chr3-104524658-1	chr3	104524158	104525158	+	700.0	f0_balb.idr	Intergenic	Lx5c|LINE|L1	-12740.0	NM_001310698	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	0.5	0.5	1.0	3.5	3.0	1.0
Merged-chr17-3113783-2	chr17	3113283	3114283	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1189.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-11705204-2	chr18	11704704	11705704	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081223, intron 6 of 18)	intron (NM_001081223, intron 6 of 18)	47855.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-65781747-3	chr14	65781252	65782252	+	700.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-24159.0	NM_023209	52033.0	Mm.24337	NM_023209	ENSMUSG00000022033	Pbk	2810434B10Rik|AW538537|D14Ertd732e|TOPK	PDZ binding kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120486112-1	chr6	120485612	120486612	+	700.0	f1_balb.idr	Intergenic	MIR|SINE|MIR	7695.0	NM_033567	94047.0	Mm.23088	NM_033567	ENSMUSG00000094626	Tmem121b	AW048664|Cecr6	transmembrane protein 121B	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr2-133614819-2	chr2	133614319	133615319	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50111.0	NR_037273	100526500.0		NR_037273	ENSMUSG00000093338	Mir3090	mmu-mir-3090	microRNA 3090	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-11398756-2	chr15	11398256	11399256	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033074, intron 1 of 18)	intron (NM_033074, intron 1 of 18)	902.0	NM_033074	110960.0	Mm.286061	NM_033074	ENSMUSG00000022241	Tars	D15Wsu59e|ThrRS	threonyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100755109-5	chr15	100754666	100755666	+	699.985718	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6581.0	NM_021530	59033.0	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	7.5	10.0	2.5	3.5	9.5	1.5
Merged-chr1-35814816-2	chr1	35814316	35815316	+	699.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-253584.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-56133423-3	chr4	56132893	56133893	+	699.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-600918.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123664211-3	chr4	123663711	123664711	+	699.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 1 of 92)	CpG	-1670.0	NR_136925	102633214.0	Mm.399387	NR_136925		Gm12925	-	predicted gene 12925	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-23792947-2	chr1	23792456	23793456	+	699.875	f0_balb.idr|f0_c57.idr	intron (NM_172124, intron 1 of 3)	intron (NM_172124, intron 1 of 3)	31030.0	NM_172124	280645.0	Mm.471661	NM_172124	ENSMUSG00000026156	B3gat2	GlcAT-S|Glcats	beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124262023-2	chr8	124261498	124262498	+	699.833374	f0_balb.idr|f1_balb.idr	intron (NM_139272, intron 1 of 15)	intron (NM_139272, intron 1 of 15)	30604.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	5.5	4.5	1.0	16.5	7.0	5.5
Merged-chr19-45631186-2	chr19	45630698	45631698	+	699.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013907, intron 4 of 8)	intron (NM_013907, intron 4 of 8)	28995.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	1.0	0.5	5.0	1.0	0.0	4.0
Merged-chr8-84670567-2	chr8	84670122	84671122	+	699.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025788, exon 6 of 6)	3' UTR (NM_025788, exon 6 of 6)	-7770.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	7.0	4.0	0.5	0.0	1.5	1.5
Merged-chr2-170317983-2	chr2	170317483	170318483	+	699.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38378.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150031526-5	chr4	150031160	150032160	+	699.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22637.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	2.0	5.5	9.0	5.0	4.0	10.5
Merged-chr4-150595235-3	chr4	150594729	150595729	+	699.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	56945.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144686134-2	chr3	144685634	144686634	+	699.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019464)	TTS (NM_019464)	34201.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88338699-2	chr3	88338199	88339199	+	699.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_178246, intron 1 of 21)	B1_Mus2|SINE|Alu	2439.0	NM_178246	229512.0	Mm.439830	NM_173188	ENSMUSG00000001415	Smg5	BC024683|mKIAA1089	Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128846251-4	chr6	128845741	128846741	+	699.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19926.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	1.0	17.5	2.0	1.0	15.0	2.0
Merged-chr12-33155865-2	chr12	33155365	33156365	+	699.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_028139, intron 2 of 3)	intron (NM_028139, intron 2 of 3)	8179.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	14.5	26.0	23.5	3.5	30.0	10.0
Merged-chr4-141929098-2	chr4	141928692	141929692	+	699.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 17 of 31)	intron (NM_177868, intron 17 of 31)	-53800.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0.0	1.0	0.0	0.0	1.5	0.0
Merged-chr13-95893490-2	chr13	95893001	95894001	+	699.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1579.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	5.0	1.5	4.5	3.0	0.0	11.0
Merged-chr6-116133239-2	chr6	116132739	116133739	+	699.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	60135.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-143741387-2	chr1	143740887	143741887	+	699.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038594, intron 1 of 3)	B1_Mus2|SINE|Alu	940.0	NM_001038594	69367.0	Mm.272727	NM_023505	ENSMUSG00000018196	Glrx2	1700010P22Rik|AI645710|Grx2	glutaredoxin 2 (thioltransferase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55327724-3	chr4	55327214	55328214	+	699.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22328.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	7.5	12.0	4.5	10.5	20.0	7.5
Merged-chr7-35741448-3	chr7	35740987	35741987	+	699.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178704, intron 3 of 18)	intron (NM_178704, intron 3 of 18)	12967.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	8.0	18.5	8.5	12.5	34.5	24.0
Merged-chr12-73587557-3	chr12	73587057	73588057	+	699.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 1 of 13)	intron (NM_008856, intron 1 of 13)	2761.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69297253-1	chr12	69296753	69297753	+	699.666687	f0_c57.idr	intron (NM_027117, intron 1 of 12)	CpG	572.0	NM_027117	69554.0	Mm.234368	NM_027117	ENSMUSG00000020978	Klhdc2	2310022K15Rik|D12Ertd522e|HCLP-1|LCP	kelch domain containing 2	protein-coding	16.5	71.0	46.5	23.0	58.5	26.5
Merged-chr11-55148191-2	chr11	55147691	55148691	+	699.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_172258, intron 3 of 10)	intron (NM_172258, intron 3 of 10)	3515.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-126955912-3	chr6	126955411	126956411	+	699.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_138594, exon 9 of 14)	exon (NM_138594, exon 9 of 14)	15945.0	NM_138594	28040.0	Mm.44228	NM_138594	ENSMUSG00000030347	D6Wsu163e	C12orf4	DNA segment, Chr 6, Wayne State University 163, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55751813-3	chr19	55751286	55752286	+	699.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 3 of 15)	intron (NR_138565, intron 3 of 15)	9976.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.0	5.0	8.5	8.5	8.0	6.0
Merged-chr3-87518626-2	chr3	87518080	87519080	+	699.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6998.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	1.5	4.0	0.0	1.5	1.0	1.0
Merged-chr16-91437692-2	chr16	91437192	91438192	+	699.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-27412.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22105642-3	chr16	22105186	22106186	+	699.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	B3|SINE|B2	57613.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67229985-2	chr10	67229485	67230485	+	699.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001242396, exon 10 of 25)	exon (NM_001242396, exon 10 of 25)	44235.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55888013-4	chr16	55887523	55888523	+	699.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134457, intron 2 of 5)	intron (NM_001134457, intron 2 of 5)	7256.0	NM_001134457	385658.0	Mm.310635	NM_001134457	ENSMUSG00000075033	Nxpe3	Fam55c|Gm1752|Gm611	neurexophilin and PC-esterase domain family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-121294202-3	chr2	121293707	121294707	+	699.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032393, intron 2 of 6)	intron (NM_032393, intron 2 of 6)	-1247.0	NM_001173506	17754.0	Mm.36501	NM_032393	ENSMUSG00000027254	Map1a	6330416M19Rik|AI853608|Mtap-1|Mtap1|Mtap1a|moth1	microtubule-associated protein 1 A	protein-coding	0.0	0.0	0.0	5.5	2.5	0.0
Merged-chr13-97534030-3	chr13	97533511	97534511	+	699.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25989.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106210076-3	chr8	106209602	106210602	+	699.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145404)	promoter-TSS (NM_145404)	831.0	NM_001007567	66432.0	Mm.269029	NM_001007567	ENSMUSG00000033106	Slc7a6os	2010007L18Rik|2400002F02Rik	solute carrier family 7, member 6 opposite strand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91526554-2	chr16	91526054	91527054	+	699.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105786)	TTS (NR_105786)	990.0	NR_105786	102465190.0		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36698311-4	chr5	36697792	36698792	+	699.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2271.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	7.5	8.0	5.5	5.0	8.5	5.5
Merged-chr1-150151448-2	chr1	150150948	150151948	+	699.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13500.0	NR_110420	102639566.0	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146185663-2	chr3	146185163	146186163	+	699.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 11 of 13)	ORR1F|LTR|ERVL-MaLR	-35298.0	NM_022983	65086.0	Mm.155520	NM_022983	ENSMUSG00000036832	Lpar3	Edg7|lpA3	lysophosphatidic acid receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68778105-3	chr11	68777652	68778652	+	699.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175260, intron 15 of 40)	intron (NM_175260, intron 15 of 40)	74979.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101974042-2	chr5	101973529	101974529	+	699.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 4 of 66)	intron (NM_172882, intron 4 of 66)	95892.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	1.0	12.5	8.0	4.0	19.0	2.5
Merged-chr19-16182107-2	chr19	16181607	16182607	+	699.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	18009.0	NR_033228	595139.0	Mm.405662	NR_033228		E030024N20Rik	9030417F11Rik|Ppia-ps8	peptidylprolyl isomerase A pseudogene 8	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19152614-2	chr7	19152114	19153114	+	699.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026943, exon 3 of 3)	exon (NM_026943, exon 3 of 3)	2776.0	NM_026943	107686.0	Mm.29135	NM_026943	ENSMUSG00000040824	Snrpd2	1810009A06Rik|SMD2	small nuclear ribonucleoprotein D2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88406368-2	chr3	88405868	88406868	+	699.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025928, intron 1 of 4)	intron (NM_025928, intron 1 of 4)	4029.0	NM_001310605	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20568842-2	chr10	20568342	20569342	+	699.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 2 of 12)	intron (NM_013875, intron 2 of 12)	-20514.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-74022324-2	chr13	74021824	74022824	+	699.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_182839, intron 2 of 3)	intron (NM_182839, intron 2 of 3)	12905.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100007975-2	chr12	100007475	100008475	+	699.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	43476.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86427942-2	chr4	86427442	86428442	+	699.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029967, exon 28 of 28)	3' UTR (NM_029967, exon 28 of 28)	130361.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-45090663-2	chr10	45090163	45091163	+	699.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011156, intron 2 of 14)	intron (NM_011156, intron 2 of 14)	23449.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5635578-2	chr17	5635078	5636078	+	699.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	142978.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70069045-2	chr14	70068545	70069545	+	699.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8400.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19121747-1	chr10	19121247	19122247	+	699.5	f0_balb.idr	Intergenic	Intergenic	-20002.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	1.0	4.5	7.0	20.5	51.0	25.5
Merged-chr17-36186278-2	chr17	36185778	36186778	+	699.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008208, exon 6 of 6)	3' UTR (NM_008208, exon 6 of 6)	3873.0	NM_008208	15043.0	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137865576-2	chr5	137865076	137866076	+	699.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001024932)	TTS (NM_001024932)	6182.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181596163-2	chr2	181595663	181596663	+	699.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172676, exon 5 of 5)	3' UTR (NM_172676, exon 5 of 5)	2984.0	NM_172676	229011.0	Mm.205422	NM_172676	ENSMUSG00000038605	Samd10	D930033N23Rik|E130318E08	sterile alpha motif domain containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95708444-2	chr3	95707944	95708944	+	699.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	-20527.0	NM_001301705	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr2-143853619-2	chr2	143853119	143854119	+	699.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291061, intron 2 of 7)	LTR16E1|LTR|ERVL	9554.0	NM_009751	12075.0	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101176582-2	chr15	101176082	101177082	+	699.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007395, intron 1 of 8)	intron (NM_007395, intron 1 of 8)	2510.0	NM_007395	11479.0	Mm.308467	NM_007395	ENSMUSG00000000532	Acvr1b	6820432J04|ALK-4|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62065794-2	chr15	62065294	62066294	+	699.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	26537.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144263777-2	chr2	144263277	144264277	+	699.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024225, intron 1 of 12)	Lx9|LINE|L1	2425.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-52565565-2	chr18	52565065	52566065	+	699.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-35698.0	NM_001286182	16948.0	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128242241-2	chr7	128241741	128242741	+	699.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_146205, exon 4 of 6)	exon (NM_146205, exon 4 of 6)	-4210.0	NM_177001	100043133.0	Mm.183647	NM_177001	ENSMUSG00000062944	9130023H24Rik	GLI4	RIKEN cDNA 9130023H24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-103722746-4	chr5	103722246	103723246	+	699.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-31416.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132261279-2	chr2	132260779	132261779	+	699.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1869.0	NM_001291040	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-100684786-2	chr3	100684286	100685286	+	699.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010763, exon 1 of 13)	exon (NM_010763, exon 1 of 13)	687.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	9.0	16.0	1.5	7.0	0.0	2.0
Merged-chr12-84756774-2	chr12	84756274	84757274	+	699.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023409, exon 4 of 4)	3' UTR (NM_023409, exon 4 of 4)	16338.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-141058946-2	chr5	141058446	141059446	+	699.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-58350.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-8668475-2	chr16	8667975	8668975	+	699.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025821, intron 1 of 3)	intron (NM_025821, intron 1 of 3)	3678.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119806736-2	chr4	119806238	119807238	+	699.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-7940.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	9.5	10.5	6.5	0.0	4.5	0.0
Merged-chr5-55621456-2	chr5	55620956	55621956	+	699.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	1271464.0	NR_038045	330086.0	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13	predicted gene 10440	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-105728359-2	chr12	105727859	105728859	+	699.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030187, intron 5 of 17)	PB1D10|SINE|Alu	22377.0	NM_030187	78801.0	Mm.36006	NM_030187	ENSMUSG00000041323	Ak7	4930502N02Rik|AK 7	adenylate kinase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78936036-2	chr17	78935531	78936531	+	699.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001024806, exon 2 of 16)	exon (NM_001024806, exon 2 of 16)	1039.0	NM_001024806	12607.0	Mm.24169	NM_009882	ENSMUSG00000024081	Cebpz	AI848081|CBF2|Cbf|Cebpa-rs1	CCAAT/enhancer binding protein zeta	protein-coding	6.5	22.0	15.5	7.0	10.0	11.5
Merged-chr2-170330750-3	chr2	170330252	170331252	+	699.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25609.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112685024-2	chr12	112684524	112685524	+	699.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CCA)n|Simple_repeat|Simple_repeat	6184.0	NM_001100460	382639.0	Mm.11350	NM_001100460	ENSMUSG00000037638	Zbtb42	EG382639|Gm5188|simiRP58	zinc finger and BTB domain containing 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150629860-2	chr4	150629360	150630360	+	699.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355737, intron 8 of 8)	intron (NM_001355737, intron 8 of 8)	22314.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32164589-2	chr17	32164089	32165089	+	699.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008716, intron 1 of 32)	intron (NM_008716, intron 1 of 32)	2263.0	NM_008716	18131.0	Mm.439741	NM_008716	ENSMUSG00000038146	Notch3	AW229011|N3|hpbk	notch 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105043922-4	chr3	105043360	105044360	+	699.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 1 of 5)	intron (NM_030249, intron 1 of 5)	9093.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32666618-3	chr11	32666098	32667098	+	699.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271349, intron 1 of 11)	intron (NM_001271349, intron 1 of 11)	24043.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145047940-3	chr7	145047494	145048494	+	699.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108069.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	8.5	22.5	21.5	21.5	32.5	25.5
Merged-chr8-83737525-3	chr8	83736985	83737985	+	699.43335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 1 of 19)	B3|SINE|B2	3826.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	114.5	342.0	204.5	65.5	188.5	156.5
Merged-chr19-45154639-3	chr19	45154125	45155125	+	699.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021901, intron 2 of 2)	intron (NM_021901, intron 2 of 2)	3910.0	NM_021901	21908.0	Mm.391203	NM_021901	ENSMUSG00000025215	Tlx1	Hox-11|Hox11|Tlx-1	T cell leukemia, homeobox 1	protein-coding	0.0	2.0	0.0	0.0	5.5	0.5
Merged-chr15-78589735-3	chr15	78589259	78590259	+	699.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7288.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	41.0	78.5	38.5	9.0	43.0	52.5
Merged-chr15-82344172-2	chr15	82343672	82344672	+	699.333374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177391, exon 2 of 2)	3' UTR (NM_177391, exon 2 of 2)	-1874.0	NM_026914	69029.0	Mm.260042	NM_026914	ENSMUSG00000022452	Smdt1	1500032L24Rik|Emre	single-pass membrane protein with aspartate rich tail 1	protein-coding	0.0	0.0	0.0	7.5	0.0	0.0
Merged-chr14-47074564-2	chr14	47074064	47075064	+	699.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 7 of 12)	intron (NM_001037221, intron 7 of 12)	5587.0	NM_001310544	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	7.0	1.0	4.0	4.0	0.0	1.0
Merged-chr16-31064745-2	chr16	31064245	31065245	+	699.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 1 of 3)	MTE2a-int|LTR|ERVL-MaLR	16687.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	5.0	6.5	0.0	1.0	2.0	1.0
Merged-chr5-144753248-2	chr5	144752748	144753748	+	699.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_177735, intron 2 of 7)	intron (NM_177735, intron 2 of 7)	8330.0	NM_177735	243339.0	Mm.126793	NM_177735	ENSMUSG00000043388	Tmem130	BC067004|C130036G08	transmembrane protein 130	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98412576-3	chr11	98412039	98413039	+	699.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001003817)	promoter-TSS (NM_001003817)	55.0	NM_001003817	13866.0	Mm.290822	NM_001003817	ENSMUSG00000062312	Erbb2	Erbb-2|HER-2|HER2|Neu|c-erbB2|c-neu|l11Jus8|mKIAA3023	erb-b2 receptor tyrosine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88710972-2	chr4	88710472	88711472	+	699.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11536.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	1.0	2.5	3.5	1.0	5.0	4.5
Merged-chr9-85573991-3	chr9	85573489	85574489	+	699.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	175345.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	7.5	17.0	13.0	3.5	0.0	10.0
Merged-chr15-84983255-5	chr15	84982754	84983754	+	699.299988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	4717.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130816941-3	chr4	130816462	130817462	+	699.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011520, exon 2 of 5)	exon (NM_011520, exon 2 of 5)	24425.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3307581-3	chr12	3307092	3308092	+	699.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 1 of 5)	intron (NM_016676, intron 1 of 5)	2377.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-40875758-2	chr17	40875252	40876252	+	699.25	f0_c57.idr|f1_c57bl6.idr	3' UTR (NM_027834, exon 2 of 2)	3' UTR (NM_027834, exon 2 of 2)	4806.0	NM_027834	71583.0	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding	2.0	0.0	2.0	0.0	3.0	1.0
Merged-chr15-58139865-2	chr15	58139306	58140306	+	699.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-1560.0	NM_001326602	76773.0	Mm.26771	NM_029734	ENSMUSG00000022359	Wdyhv1	2410187C16Rik|AU014961|AW550036|Ntaq1	WDYHV motif containing 1	protein-coding	1.0	7.0	19.0	28.5	62.5	37.0
Merged-chr2-27326020-2	chr2	27325520	27326520	+	699.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 2 of 29)	intron (NR_133905, intron 2 of 29)	-78717.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20640201-3	chr14	20639693	20640693	+	699.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16347.0	NM_021508	59011.0	Mm.439911	NM_021508	ENSMUSG00000068697	Myoz1	2310001N11Rik|AV090278|FATZ|Myoz	myozenin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62238100-2	chr10	62237600	62238600	+	699.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6882.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101107603-2	chr7	101107086	101108086	+	699.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-1189.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	23.5	9.0	18.5	11.0	26.5	16.0
Merged-chr12-33127165-2	chr12	33126670	33127670	+	699.150024	f1_balb.idr|f1_c57bl6.idr	intron (NR_015602, intron 4 of 5)	intron (NR_015602, intron 4 of 5)	20416.0	NR_015602	320046.0	Mm.208337	NR_015602	ENSMUSG00000052125	F730043M19Rik	-	RIKEN cDNA F730043M19 gene	ncRNA	1.5	0.0	0.0	4.5	0.0	0.0
Merged-chr8-75096544-4	chr8	75096003	75097003	+	699.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010442, intron 2 of 4)	PB1D10|SINE|Alu	2885.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113245763-4	chr6	113245264	113246264	+	699.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155434, intron 2 of 17)	intron (NR_155434, intron 2 of 17)	7921.0	NR_155433	97287.0	Mm.197816	NM_026849	ENSMUSG00000030269	Mtmr14	1110061O04Rik|AW553738|C76151	myotubularin related protein 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7071132-2	chr19	7070632	7071632	+	699.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_134147, intron 3 of 10)	intron (NM_134147, intron 3 of 10)	14364.0	NM_134147	107227.0	Mm.439977	NM_134147	ENSMUSG00000036278	Macrod1	AI604841|AW743046|D930010J01Rik|Lrp16	MACRO domain containing 1	protein-coding	0.0	0.0	0.0	3.5	14.0	0.0
Merged-chr19-23961604-2	chr19	23961095	23962095	+	699.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69424.0	NM_001114174	381217.0	Mm.426078	NM_001114174	ENSMUSG00000071604	Fam189a2	AI414343|AI666772|Gm967	family with sequence similarity 189, member A2	protein-coding	0.0	0.0	2.0	4.0	1.0	0.0
Merged-chr2-18872949-4	chr2	18872467	18873467	+	699.012512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355147, intron 3 of 8)	intron (NM_001355147, intron 3 of 8)	-71149.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17567994-3	chr10	17567465	17568465	+	699.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-155263.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.0	0.0	2.5	0.0	2.0	2.0
Merged-chr11-76490787-2	chr11	76490287	76491287	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198018, intron 1 of 21)	intron (NM_198018, intron 1 of 21)	3708.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.0	5.0	2.5	0.0	0.5	4.0
Merged-chr13-92670909-2	chr13	92670409	92671409	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172588, intron 2 of 11)	B1_Mus1|SINE|Alu	59771.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60679967-1	chr13	60679467	60680467	+	699.0	f1_balb.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	77756.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	15.5	13.5	10.5	5.0	14.0	11.5
Merged-chr9-65033773-2	chr9	65033273	65034273	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028906, intron 1 of 20)	PB1D10|SINE|Alu	1315.0	NM_028906	74388.0	Mm.202749	NM_028906	ENSMUSG00000032393	Dpp8	2310004I03Rik|4932434F09Rik|AI666706|DPP VIII	dipeptidylpeptidase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-13009572-2	chr17	13009072	13010072	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013671, intron 2 of 4)	B2_Mm2|SINE|B2	1733.0	NM_013671	20656.0	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87954831-1	chr17	87954331	87955331	+	699.0	f0_balb.idr	Intergenic	ERVB4_2-LTR_MM|LTR|ERVK	-20219.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-106760031-1	chr13	106759531	106760531	+	699.0	f1_c57bl6.idr	Intergenic	Intergenic	176927.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	1.0	2.0	0.0	0.0	0.0	0.0
Merged-chr11-69514972-2	chr11	69514472	69515472	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 11 of 85)	intron (NM_001081330, intron 11 of 85)	34136.0	NM_001081330	327954.0	Mm.247478	NM_177617	ENSMUSG00000005237	Dnah2	2900022L05Rik|4930564A01|D130094J20|D330014H01Rik|Dnahc2|Dnhd3	dynein, axonemal, heavy chain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139735400-2	chr5	139734900	139735900	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_174850, intron 1 of 16)	intron (NM_174850, intron 1 of 16)	933.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	2.0	26.0	19.5	4.0	6.5	9.0
Merged-chr19-34528315-2	chr19	34527815	34528815	+	699.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021460)	promoter-TSS (NM_021460)	-841.0	NM_021460	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-132430200-1	chr5	132429700	132430700	+	699.0	f0_balb.idr	intron (NM_177047, intron 1 of 19)	intron (NM_177047, intron 1 of 19)	112143.0	NM_177047	319974.0	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84726794-1	chr2	84726294	84727294	+	699.0	f1_c57bl6.idr	intron (NM_133840, intron 1 of 2)	intron (NM_133840, intron 1 of 2)	474.0	NM_133840	98985.0	Mm.21583	NM_133840	ENSMUSG00000027079	Clp1	AI462438|Heab	CLP1, cleavage and polyadenylation factor I subunit	protein-coding	30.0	65.0	71.5	31.0	83.0	51.0
Merged-chr6-89033723-2	chr6	89033223	89034223	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62387.0	NR_134978	232217.0	Mm.281744	NM_175017	ENSMUSG00000055403	4933427D06Rik	-	RIKEN cDNA 4933427D06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68284929-2	chr10	68284429	68285429	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6203.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.0	0.5	0.5	0.0	0.0	0.0
Merged-chr1-75217606-2	chr1	75217106	75218106	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313723, intron 1 of 3)	intron (NM_001313723, intron 1 of 3)	1688.0	NM_001313723	22145.0	Mm.1155	NM_009447	ENSMUSG00000026202	Tuba4a	M[a]4|Tuba4	tubulin, alpha 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166479108-2	chr2	166478608	166479608	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31657.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-58035860-3	chr2	58035381	58036381	+	699.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172855, intron 9 of 9)	intron (NM_172855, intron 9 of 9)	16871.0	NM_029972	77767.0	Mm.91712	NM_029972	ENSMUSG00000026830	Ermn	A330104H05Rik|AI854460|ermin|mKIAA1189	ermin, ERM-like protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-27139180-2	chr16	27138680	27139680	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147528.0	NM_001285918	239789.0	Mm.326909	NM_001013761	ENSMUSG00000068428	Gmnc	Gemc1|Gm1778|Gm606	geminin coiled-coil domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132768690-1	chr4	132768190	132769190	+	699.0	f0_balb.idr	exon (NM_011284, exon 2 of 9)	exon (NM_011284, exon 2 of 9)	330.0	NM_011284	19891.0	Mm.2870	NM_011284	ENSMUSG00000028884	Rpa2	AA409079|AI325195|AU020965|RPA34|Rf-A2	replication protein A2	protein-coding	5.5	7.5	14.0	5.0	8.5	14.0
Merged-chr16-57399721-1	chr16	57399221	57400221	+	699.0	f1_balb.idr	intron (NM_001040397, intron 1 of 4)	ORR1D2|LTR|ERVL-MaLR	46444.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr11-120043579-1	chr11	120043079	120044079	+	699.0	f1_balb.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	-1798.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	12.0	1.5	13.0	6.0	15.0	10.5
Merged-chr5-140651388-2	chr5	140650888	140651888	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2357.0	NM_175274	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88711783-2	chr10	88711283	88712283	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19318.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106229394-1	chr9	106228894	106229894	+	699.0	f1_balb.idr	Intergenic	B1_Mur1|SINE|Alu	6796.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	35.0	66.0	32.5	28.5	38.0	23.0
Merged-chr8-47917230-1	chr8	47916730	47917730	+	699.0	f0_balb.idr	intron (NM_133791, intron 2 of 22)	intron (NM_133791, intron 2 of 22)	73321.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24655338-1	chr16	24654838	24655838	+	699.0	f0_balb.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-66517.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106745219-2	chr11	106744719	106745719	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6007.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145243794-2	chr4	145243294	145244294	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	3076.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29378972-2	chr17	29378474	29379474	+	699.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013710, exon 16 of 16)	exon (NM_013710, exon 16 of 16)	18060.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	5.5	13.5	12.5	6.5	21.0	7.0
Merged-chr10-80655144-2	chr10	80654644	80655644	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145361, intron 1 of 8)	intron (NM_145361, intron 1 of 8)	1927.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-19739935-2	chr14	19739435	19740435	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	-11322.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65614362-1	chr3	65613862	65614862	+	699.0	f1_c57bl6.idr	Intergenic	Intergenic	-44926.0	NR_106200	102465905.0		NR_106200	ENSMUSG00000098944	Mir8120	Gm27637|mmu-mir-8120	microRNA 8120	ncRNA	0.0	0.0	0.0	3.5	0.5	0.0
Merged-chr11-119272849-1	chr11	119272349	119273349	+	699.0	f1_balb.idr	intron (NM_008064, intron 2 of 19)	intron (NM_008064, intron 2 of 19)	4886.0	NM_008064	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	2.5	10.5	2.5	10.5	14.5	12.5
Merged-chr14-48130983-1	chr14	48130483	48131483	+	699.0	f0_balb.idr	intron (NM_033602, intron 1 of 5)	intron (NM_033602, intron 1 of 5)	10114.0	NM_033602	93834.0	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	5.0	2.0	2.0	4.5	41.5	30.5
Merged-chr13-52985895-2	chr13	52985395	52986395	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4856.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	0.0	0.0	0.5	0.0	0.0	1.0
Merged-chr2-93334027-1	chr2	93333527	93334527	+	699.0	f0_balb.idr	intron (NM_183180, intron 1 of 9)	CpG	460.0	NM_183180	241556.0	Mm.274159	NM_183180	ENSMUSG00000027217	Tspan18	2610042G18Rik|6720430O15|BB226562	tetraspanin 18	protein-coding	0.0	2.5	1.0	2.0	11.5	0.5
Merged-chr2-25563876-2	chr2	25563376	25564376	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081199, intron 27 of 28)	intron (NM_001081199, intron 27 of 28)	5976.0	NM_021519	59022.0	Mm.29945	NM_021519	ENSMUSG00000015092	Edf1	0610008L11Rik|AA409425	endothelial differentiation-related factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119743746-2	chr2	119743291	119744291	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146125, intron 1 of 6)	intron (NM_146125, intron 1 of 6)	1454.0	NM_146125	228550.0	Mm.65337	NM_146125	ENSMUSG00000027296	Itpka	-	inositol 1,4,5-trisphosphate 3-kinase A	protein-coding	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-70261160-1	chr10	70260660	70261660	+	699.0	f0_balb.idr	intron (NM_025807, intron 2 of 5)	intron (NM_025807, intron 2 of 5)	15884.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146855219-1	chr6	146854719	146855719	+	699.0	f0_balb.idr	intron (NM_027059, intron 2 of 9)	MTE2b|LTR|ERVL-MaLR	5109.0	NM_027059	69371.0	Mm.252733	NM_027059	ENSMUSG00000030292	Smco2	1700023A16Rik	single-pass membrane protein with coiled-coil domains 2	protein-coding	0.0	3.0	0.0	3.5	2.5	1.0
Merged-chr3-74901069-2	chr3	74900569	74901569	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	242703.0	NM_001310529	213234.0	Mm.80075	NM_172515	ENSMUSG00000034151	Zbbx	4931432L23	zinc finger, B-box domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40485463-1	chr12	40484963	40485963	+	699.0	f0_balb.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	39410.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-13369148-2	chr15	13368648	13369648	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-195473.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43432925-2	chr4	43432425	43433425	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3791.0	NM_001162381	329831.0	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120965893-2	chr9	120965393	120966393	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177589, intron 36 of 36)	intron (NM_177589, intron 36 of 36)	10807.0	NR_106058	102465661.0		NR_106058	ENSMUSG00000106193	Mir7090	mmu-mir-7090	microRNA 7090	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81362251-2	chr10	81361751	81362751	+	699.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028657, exon 6 of 10)	exon (NM_028657, exon 6 of 10)	3569.0	NM_001014836	432479.0	Mm.440450	NM_001014836	ENSMUSG00000020234	4930404N11Rik	2210409H10Rik|5730551K18Rik|AI854616	RIKEN cDNA 4930404N11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21320270-2	chr9	21319770	21320770	+	699.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199186)	promoter-TSS (NM_001199186)	-449.0	NM_001359227	68682.0	Mm.148425	NM_152808	ENSMUSG00000057193	Slc44a2	1110028E10Rik|CTL2	solute carrier family 44, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24318876-3	chr13	24318366	24319366	+	699.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8538.0	NM_001284519	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181060280-2	chr2	181059780	181060780	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21103.0	NM_015730	11438.0	Mm.252369	NM_015730	ENSMUSG00000027577	Chrna4	Acra-4|Acra4|EBN1|ENFL1	cholinergic receptor, nicotinic, alpha polypeptide 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60780005-2	chr11	60779505	60780505	+	699.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175491, exon 1 of 1)	exon (NM_175491, exon 1 of 1)	2480.0	NM_175491	237782.0	Mm.57726	NM_175491	ENSMUSG00000049323	Smcr8	2310076G09Rik|AI642055|D030073L15Rik	Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164441645-2	chr2	164441145	164442145	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011521, intron 1 of 4)	intron (NM_011521, intron 1 of 4)	1543.0	NM_011521	20971.0	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55020217-2	chr12	55019723	55020723	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAGAGA)n|Simple_repeat|Simple_repeat	-33887.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	52.5	118.5	98.5	36.0	56.0	50.5
Merged-chr8-120431198-2	chr8	120430698	120431698	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57668.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-117461739-2	chr6	117461239	117462239	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33496.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25055317-2	chr2	25054817	25055817	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039386, intron 2 of 15)	intron (NM_001039386, intron 2 of 15)	938.0	NM_001177655	56876.0	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-31857796-3	chr9	31857279	31858279	+	699.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013800, intron 2 of 3)	intron (NM_013800, intron 2 of 3)	55506.0	NM_013800	12023.0	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180921809-2	chr2	180921308	180922308	+	699.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173761)	promoter-TSS (NM_173761)	-872.0	NM_173761	228994.0	Mm.30205	NM_173761	ENSMUSG00000038848	Ythdf1	2210410K23Rik|8030473O16	YTH domain family 1	protein-coding	3.5	7.0	2.0	7.0	5.0	2.0
Merged-chr8-22862296-2	chr8	22861796	22862796	+	699.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081149, exon 3 of 18)	exon (NM_001081149, exon 3 of 18)	2757.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100514843-2	chr7	100514343	100515343	+	699.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153527)	promoter-TSS (NM_153527)	-28.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-51472536-2	chr6	51472036	51473036	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355002, intron 2 of 5)	intron (NM_001355002, intron 2 of 5)	1284.0	NM_001355002	12417.0	Mm.280968	NM_007624	ENSMUSG00000029836	Cbx3	HP1g|M32	chromobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5556577-2	chr17	5556077	5557077	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	63977.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40802832-2	chr9	40802350	40803350	+	699.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_031165, exon 4 of 9)	exon (NM_031165, exon 4 of 9)	1577.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	21.0	45.5	31.0	15.0	49.5	35.0
Merged-chr14-55556055-2	chr14	55555555	55556555	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-3974.0	NR_037572	28199.0	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61099665-2	chr10	61099165	61100165	+	699.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001316674, exon 15 of 15)	3' UTR (NM_001316674, exon 15 of 15)	10334.0	NM_025273	13180.0	Mm.39473	NM_025273	ENSMUSG00000020098	Pcbd1	Dcoh|Pcbd|Pcd|Phs	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100719526-3	chr5	100719011	100720011	+	699.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_152803, exon 1 of 12)	exon (NM_152803, exon 1 of 12)	205.0	NM_152803	15442.0	Mm.265786	NM_152803	ENSMUSG00000035273	Hpse	HSE1|Hpa|Hpr1	heparanase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27668203-2	chr15	27667703	27668703	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	13339.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130027777-2	chr5	130027277	130028277	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1529.0	NM_007761	12909.0	Mm.18072	NM_007761	ENSMUSG00000025532	Crcp	AL022669	calcitonin gene-related peptide-receptor component protein	protein-coding	0.0	2.0	2.0	0.0	0.0	0.0
Merged-chr4-132088983-2	chr4	132088483	132089483	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13670.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123037588-1	chr8	123037088	123038088	+	699.0	f1_balb.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	4696.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	7.0	5.0	8.0	18.5	6.5	3.5
Merged-chr2-160176812-2	chr2	160176312	160177312	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150682.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19319250-2	chr3	19318750	19319750	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	-7928.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85335946-2	chr12	85335446	85336446	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145138, intron 2 of 21)	B1F|SINE|Alu	3416.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-29006538-2	chr13	29006038	29007038	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7876.0	NR_045077	77920.0	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126321133-1	chr4	126320633	126321633	+	699.0	f0_c57.idr	TTS (NM_011902)	TTS (NM_011902)	570.0	NM_133883	100206.0	Mm.11285	NM_133883	ENSMUSG00000042558	Adprhl2	AI836109|Arh3	ADP-ribosylhydrolase like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86303486-2	chr1	86302986	86303986	+	699.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151592, exon 2 of 2)	non-coding (NR_151592, exon 2 of 2)	265.0	NM_145222	227327.0	Mm.86467	NM_145222	ENSMUSG00000079445	B3gnt7	C330001H22Rik|beta-3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-21564537-2	chr15	21564037	21565037	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008420, intron 8 of 11)	ORR1B1-int|LTR|ERVL-MaLR	453085.0	NM_001008420	215654.0	Mm.300909	NM_001008420	ENSMUSG00000040452	Cdh12	Cdhb	cadherin 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-15978775-2	chr7	15978275	15979275	+	699.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081418, exon 9 of 14)	exon (NM_001081418, exon 9 of 14)	-11240.0	NM_153068	259300.0	Mm.138215	NM_153068	ENSMUSG00000074364	Ehd2	BC027084|C130052H20Rik	EH-domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-119997228-4	chr1	119996687	119997687	+	698.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1977.0	NM_001115074	226356.0	Mm.297290	NM_001115074	ENSMUSG00000036962	Cfap221	Gm101|Pcdp1	cilia and flagella associated protein 221	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117424251-3	chr5	117423760	117424760	+	698.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	10258.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	7.5	1.5	1.0	0.5	0.0	3.5
Merged-chr3-75279798-3	chr3	75279274	75280274	+	698.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-9696.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27975490-3	chr17	27974985	27975985	+	698.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 2 of 24)	intron (NM_181413, intron 2 of 24)	66179.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116630855-2	chr11	116630322	116631322	+	698.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17D2|LTR|ERVK	-3803.0	NM_172572	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	6.5	2.0	5.0	19.0	13.0	9.5
Merged-chr7-118470634-4	chr7	118470124	118471124	+	698.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21351.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	21.0	53.5	24.5	0.0	6.0	6.5
Merged-chr3-88454121-2	chr3	88453621	88454621	+	698.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013658, intron 2 of 14)	intron (NM_013658, intron 2 of 14)	1640.0	NM_013658	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30172210-3	chr5	30171708	30172708	+	698.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145558, intron 6 of 15)	intron (NM_145558, intron 6 of 15)	1469.0	NR_035486	100316709.0		NR_035486	ENSMUSG00000088113	Mir1960	mir-1960|mmu-mir-1960	microRNA 1960	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-97673639-3	chr1	97673145	97674145	+	698.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-11627.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-74948662-3	chr5	74948112	74949112	+	698.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045866)	promoter-TSS (NR_045866)	-582.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137624978-2	chr5	137624478	137625478	+	698.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027708)	promoter-TSS (NM_027708)	100.0	NM_027708	71176.0	Mm.474695	NM_027708	ENSMUSG00000089984	Fbxo24	4933422D21Rik|Fbx24	F-box protein 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9151311-2	chr13	9150811	9151811	+	698.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 11 of 17)	intron (NM_172585, intron 11 of 17)	57430.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34970495-2	chr17	34969995	34970995	+	698.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_010479, exon 1 of 1)	exon (NM_010479, exon 1 of 1)	1661.0	NM_010479	193740.0	Mm.6388	NM_010479	ENSMUSG00000091971	Hspa1a	Hsp70-3|Hsp70.3|Hsp72|hsp68|hsp70A1	heat shock protein 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97315717-4	chr7	97315260	97316260	+	698.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177412, intron 5 of 9)	MTC|LTR|ERVL-MaLR	10204.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5643820-2	chr17	5643320	5644320	+	698.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	151220.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-38483698-2	chr3	38483198	38484198	+	698.75	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001167883, exon 2 of 4)	5' UTR (NM_001167883, exon 2 of 4)	1118.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-19870578-4	chr4	19870074	19871074	+	698.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51847.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	0.0	0.5	2.0	0.0	0.5	3.5
Merged-chr3-105775884-3	chr3	105775346	105776346	+	698.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145541, intron 1 of 7)	MTA_Mm|LTR|ERVL-MaLR	25535.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6474596-2	chr4	6474096	6475096	+	698.708374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12B|LTR|ERVK	-20325.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92978887-4	chr1	92978383	92979383	+	698.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022320)	promoter-TSS (NM_022320)	-20.0	NM_022320	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83772835-3	chr8	83772340	83773340	+	698.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31529.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	14.5	8.5	17.5	32.0	31.5	29.5
Merged-chr6-135163559-3	chr6	135163166	135164166	+	698.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013546, intron 1 of 3)	B3|SINE|B2	4549.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	10.5	31.5	24.0	21.0	11.0	14.5
Merged-chr17-15632163-3	chr17	15631646	15632646	+	698.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045431, intron 1 of 3)	intron (NR_045431, intron 1 of 3)	358.0	NR_045431	71008.0	Mm.399492	NR_045431		4933401D09Rik	-	RIKEN cDNA 4933401D09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44776334-3	chr10	44775795	44776795	+	698.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-290919.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28467617-3	chr7	28467138	28468138	+	698.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001141921)	TTS (NM_001141921)	15400.0	NM_001141921	80749.0	Mm.483073	NM_030562	ENSMUSG00000030600	Lrfn1	BC004018|SALM2|Semo1	leucine rich repeat and fibronectin type III domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-38124274-2	chr7	38123773	38124773	+	698.666626	f0_balb.idr|f1_balb.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-16783.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	0.0	10.0	2.5	2.0	7.5	5.5
Merged-chr6-51629806-2	chr6	51629306	51630306	+	698.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84513.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-16334497-3	chr2	16333995	16334995	+	698.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21809.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120317076-2	chr2	120316576	120317576	+	698.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027618, exon 26 of 26)	non-coding (NR_027618, exon 26 of 26)	-2911.0	NM_001024145	271844.0	Mm.24880	NM_001024145	ENSMUSG00000046971	Pla2g4f	4732472I07Rik|Gm647|Pla2zeta	phospholipase A2, group IVF	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8315474-2	chr12	8314974	8315974	+	698.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021429, intron 1 of 6)	L2a|LINE|L2	2041.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-128675739-3	chr1	128675269	128676269	+	698.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83470.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.0	4.0	0.5	0.0	0.0	0.0
Merged-chr17-47219450-2	chr17	47218950	47219950	+	698.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 3 of 19)	B4|SINE|B4	-10780.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142894803-3	chr7	142894297	142895297	+	698.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009377, intron 9 of 12)	intron (NM_009377, intron 9 of 12)	5169.0	NM_009377	21823.0	Mm.1292	NM_009377	ENSMUSG00000000214	Th	-	tyrosine hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-72403631-2	chr1	72403131	72404131	+	698.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96210.0	NM_001357519	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-101972583-2	chr10	101972083	101973083	+	698.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205098, intron 2 of 7)	Lx4A|LINE|L1	-186275.0	NM_001162368	67569.0	Mm.25252	NM_026243	ENSMUSG00000019888	Mgat4c	9130411I17Rik|GntIVh	MGAT4 family, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44124104-2	chr9	44123604	44124604	+	698.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152189, exon 2 of 2)	non-coding (NR_152189, exon 2 of 2)	10381.0	NR_152189	100038560.0	Mm.429758	NR_152189		Gm10687	-	predicted gene 10687	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64182289-2	chr17	64181789	64182789	+	698.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	-131617.0	NR_130982	68771.0	Mm.443351	NR_130982		1110058D11Rik	-	RIKEN cDNA 1110058D11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54164919-2	chr6	54164419	54165419	+	698.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	-99939.0	NM_001311133	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0.0	2.5	1.0	2.0	2.0	1.0
Merged-chr9-118864684-2	chr9	118864184	118865184	+	698.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 9 of 13)	intron (NM_001113514, intron 9 of 13)	-61852.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	4.0	17.5	16.5	14.0	20.0	1.5
Merged-chr17-62459113-3	chr17	62458637	62459637	+	698.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	422180.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126156823-2	chr4	126156323	126157323	+	698.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025856, intron 6 of 11)	B3|SINE|B2	5842.0	NM_025856	66938.0	Mm.29813	NM_025856	ENSMUSG00000073758	Sh3d21	1700029G01Rik|AU019788	SH3 domain containing 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52539432-3	chr2	52538940	52539940	+	698.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	19171.0	NM_146123	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137884020-2	chr5	137883520	137884520	+	698.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12262.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-55543601-2	chr9	55543101	55544101	+	698.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027397, intron 3 of 5)	intron (NM_027397, intron 3 of 5)	2452.0	NM_027397	104360.0	Mm.273996	NM_027397	ENSMUSG00000032318	Isl2	3110001N10Rik	insulin related protein 2 (islet 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36658222-2	chr16	36657722	36658722	+	698.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	L1MD2|LINE|L1	7855.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96765386-2	chr11	96764886	96765886	+	698.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12169.0	NM_028965	74479.0	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	12.5	39.5	23.5	8.0	25.5	18.0
Merged-chr16-33535143-3	chr16	33534639	33535639	+	698.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 2 of 11)	intron (NM_001083902, intron 2 of 11)	16544.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117914413-2	chr11	117913913	117914913	+	698.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40887.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91021492-2	chr1	91020992	91021992	+	698.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	B3|SINE|B2	22765.0	NM_001111312	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-28713384-1	chr12	28712884	28713884	+	698.5	f0_balb.idr	intron (NM_001161410, intron 5 of 11)	intron (NM_001161410, intron 5 of 11)	34059.0	NR_105902	102465980.0		NR_105902	ENSMUSG00000098579	Mir6937	Gm27448|mmu-mir-6937	microRNA 6937	ncRNA	0.5	4.0	3.5	4.0	6.0	3.5
Merged-chr13-58520187-2	chr13	58519687	58520687	+	698.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	90690.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71379670-2	chr8	71379170	71380170	+	698.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010150, intron 1 of 3)	intron (NM_010150, intron 1 of 3)	2282.0	NM_010150	13864.0	Mm.28989	NM_010150	ENSMUSG00000002393	Nr2f6	AV090102|COUP-TF3|EAR2|Erbal2	nuclear receptor subfamily 2, group F, member 6	protein-coding	0.0	3.0	1.0	2.5	0.0	4.0
Merged-chr17-64583999-2	chr17	64583499	64584499	+	698.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17650.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-111372766-2	chr1	111372266	111373266	+	698.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	-395173.0	NM_001081386	227485.0	Mm.322070	NM_001081386	ENSMUSG00000047216	Cdh19	-	cadherin 19, type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24387232-2	chr2	24386732	24387732	+	698.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355232, intron 1 of 16)	intron (NM_001355232, intron 1 of 16)	616.0	NM_001355232	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-145069885-2	chr5	145069385	145070385	+	698.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13984.0	NM_019767	56443.0	Mm.371610	NM_019767	ENSMUSG00000029621	Arpc1a	0610010H08Rik|1110030K07Rik|41kDa|AA407347|Sid32|Sid329	actin related protein 2/3 complex, subunit 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6744604-2	chr17	6744104	6745104	+	698.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 7 of 12)	intron (NM_009510, intron 7 of 12)	38176.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167959601-2	chr2	167959101	167960101	+	698.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	27274.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73747529-2	chr15	73747029	73748029	+	698.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008975)	promoter-TSS (NM_008975)	-497.0	NM_008975	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-49831683-2	chr18	49831183	49832183	+	698.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1314.0	NM_001081371	240283.0	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45045749-2	chr19	45045249	45046249	+	698.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195265)	promoter-TSS (NM_001195265)	23.0	NM_001195265	100503041.0	Mm.329877	NM_177605	ENSMUSG00000074818	Pdzd7	9130207N01|EG435601|Pdzk7	PDZ domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6553869-2	chr15	6553369	6554369	+	698.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25978.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-93552794-2	chr4	93552294	93553294	+	698.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-217283.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75102578-2	chr11	75102078	75103078	+	698.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 13 of 18)	intron (NM_001002764, intron 13 of 18)	-36587.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37911389-2	chr13	37910889	37911889	+	698.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 6 of 9)	intron (NM_001039188, intron 6 of 9)	22518.0	NM_001177869	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-23284768-2	chr15	23284268	23285268	+	698.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081299, intron 4 of 11)	Lx2B|LINE|L1	248305.0	NM_001081299	320865.0	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l|Tg(GFAP-APOE_i4)1Hol	cadherin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48336598-2	chr17	48336098	48337098	+	698.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-9803.0	NM_031254	83433.0	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110304627-2	chr9	110304127	110305127	+	698.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081381)	promoter-TSS (NM_001081381)	-565.0	NM_001081381	72341.0	Mm.374250	NM_001081381	ENSMUSG00000054836	Elp6	2610001P13Rik|2610002I17Rik|AV159994|Tmem103	elongator acetyltransferase complex subunit 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126867255-2	chr8	126866755	126867755	+	698.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18235.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	6.0	20.5	19.5	6.0	20.5	18.5
Merged-chr8-91060719-3	chr8	91060174	91061174	+	698.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-9383.0	NM_001282001	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	6.5	6.0	15.0	9.5	20.5	26.0
Merged-chr6-124476342-2	chr6	124475842	124476842	+	698.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	-11558.0	NM_153508	232370.0	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25090460-8	chr12	25089840	25090840	+	698.395813	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5752.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	0.0	4.5	0.0	3.0	1.0	0.0
Merged-chr19-6338625-2	chr19	6338125	6339125	+	698.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168489, intron 7 of 9)	intron (NM_001168489, intron 7 of 9)	-2535.0	NM_009006	26412.0	Mm.25860	NM_009006	ENSMUSG00000024948	Map4k2	AI385662|BL44|GCK|Rab8ip	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-119003481-4	chr14	119002997	119003997	+	698.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081252, intron 34 of 38)	B3|SINE|B2	65565.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	0.0	3.0	1.0	2.5	1.0	1.0
Merged-chr18-39319421-3	chr18	39318895	39319895	+	698.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 20 of 21)	intron (NM_001361073, intron 20 of 21)	167850.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	13.0	9.0	6.0	2.0	0.0	3.5
Merged-chr14-26579031-3	chr14	26578520	26579520	+	698.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134465)	promoter-TSS (NM_001134465)	-530.0	NM_001134465	211922.0	Mm.260512	NM_145969	ENSMUSG00000040818	Dennd6a	Fam116a	DENN/MADD domain containing 6A	protein-coding	6.5	40.5	24.5	6.5	40.5	24.5
Merged-chr6-127237385-2	chr6	127236885	127237885	+	698.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70582.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141616601-3	chr4	141616166	141617166	+	698.333313	f1_balb.idr|f1_c57bl6.idr	intron (NR_151462, intron 3 of 5)	intron (NR_151462, intron 3 of 5)	1967.0	NM_145987	213989.0	Mm.34891	NM_145987	ENSMUSG00000043085	Tmem82	-	transmembrane protein 82	protein-coding	4.0	2.0	6.0	0.0	5.0	2.0
Merged-chr16-81462864-1	chr16	81462364	81463364	+	698.333313	f0_balb.idr	intron (NM_001113208, intron 7 of 17)	L1Md_F2|LINE|L1	262167.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30643572-2	chr14	30643072	30644072	+	698.3000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10803.0	NM_177815	328370.0	Mm.259657	NM_177815	ENSMUSG00000052395	Rft1	D930025H04	RFT1 homolog	protein-coding	0.0	4.5	0.0	0.5	0.0	5.0
Merged-chr19-34260155-2	chr19	34259662	34260662	+	698.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4789.0	NM_007392	11475.0	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMAalpha|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	1.0	17.0	4.0	5.5	8.0	4.5
Merged-chr5-52423655-2	chr5	52423155	52424155	+	698.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001256059, intron 3 of 11)	L2a|LINE|L2	-17504.0	NR_152197	100041805.0	Mm.417070	NR_152197		Gm3519	Gm43683	predicted gene 3519	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26493580-2	chr2	26493045	26494045	+	698.25	f0_balb.idr|f0_c57.idr	intron (NM_008714, intron 2 of 33)	intron (NM_008714, intron 2 of 33)	10277.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85517273-5	chr8	85516812	85517812	+	698.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173866, intron 7 of 11)	intron (NM_173866, intron 7 of 11)	24695.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	23.0	40.0	27.5	8.0	0.0	0.5
Merged-chr15-78926678-3	chr15	78926176	78927176	+	698.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008495)	promoter-TSS (NM_008495)	-49.0	NM_008495	16852.0	Mm.43831	NM_008495	ENSMUSG00000068220	Lgals1	AA410090|Gal-1|Galbp|L-14.5|L14|Lect14|galectin-1	lectin, galactose binding, soluble 1	protein-coding	0.0	2.0	6.0	0.0	2.0	2.0
Merged-chr9-65828822-2	chr9	65828322	65829322	+	698.166687	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019797)	TTS (NM_019797)	-1258.0	NM_172536	214812.0	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95811014-2	chr11	95810514	95811514	+	698.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13486.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33349147-2	chr2	33348647	33349647	+	698.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290570, intron 1 of 16)	intron (NM_001290570, intron 1 of 16)	22347.0	NM_001290570	241308.0	Mm.274249	NM_175211	ENSMUSG00000038831	Ralgps1	5830418G11Rik|AI853783|AI854138|RALGEF2|RALGPS1A|RalGEF 2|mKIAA0351	Ral GEF with PH domain and SH3 binding motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99156148-2	chr7	99155648	99156648	+	698.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026384, intron 7 of 7)	intron (NM_026384, intron 7 of 7)	-15004.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-55442262-3	chr3	55441746	55442746	+	698.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357475, intron 4 of 16)	intron (NM_001357475, intron 4 of 16)	-19482.0	NM_001195539	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33643143-2	chr17	33642643	33643643	+	698.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002842, intron 4 of 9)	intron (NM_001002842, intron 4 of 9)	5048.0	NR_028279	378460.0	Mm.272606	NM_001002842	ENSMUSG00000032739	Pram1	AY665714	PML-RAR alpha-regulated adaptor molecule 1	protein-coding	0.0	0.0	1.5	0.0	4.0	0.0
Merged-chr18-82561494-2	chr18	82560994	82561994	+	698.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025255, intron 1 of 5)	intron (NM_001025255, intron 1 of 5)	6986.0	NM_001025254	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99406074-3	chr5	99405583	99406583	+	698.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-153156.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44025956-2	chr16	44025456	44026456	+	698.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359085, intron 5 of 16)	RMER20B|LTR|ERVK	1989.0	NM_001172107	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45049346-2	chr14	45048846	45049846	+	698.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61235.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11144957-2	chr4	11144457	11145457	+	698.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10860.0	NR_030455	735261.0		NR_030455	ENSMUSG00000105333	Mir684-2	Mirn684-2	microRNA 684-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49856868-1	chr16	49856368	49857368	+	698.0	f0_balb.idr	intron (NM_010581, intron 1 of 9)	intron (NM_010581, intron 1 of 9)	1214.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32557473-1	chr11	32556973	32557973	+	698.0	f1_balb.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	24207.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	27.5	83.5	53.5	35.0	110.0	60.5
Merged-chr14-52190871-1	chr14	52190371	52191371	+	698.0	f0_balb.idr	intron (NM_033618, intron 1 of 25)	B3|SINE|B2	6368.0	NM_033618	114741.0	Mm.21662	NM_033618	ENSMUSG00000035726	Supt16	Cdc68|Fact140|Spt16|Supt16h	suppressor of Ty 16	protein-coding	12.5	19.5	10.5	11.5	7.0	5.0
Merged-chr18-37883295-2	chr18	37882795	37883795	+	698.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007858, intron 16 of 26)	intron (NM_007858, intron 16 of 26)	-28635.0	NR_105945	102465592.0		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-10467183-2	chr10	10466761	10467761	+	698.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	5053.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	61.0	110.5	89.0	11.0	21.5	13.0
Merged-chr2-120967631-1	chr2	120967131	120968131	+	698.0	f0_balb.idr	intron (NM_009461, intron 1 of 46)	L2|LINE|L2	3084.0	NM_009461	22222.0	Mm.389330	NM_009461	ENSMUSG00000027272	Ubr1	AI504731	ubiquitin protein ligase E3 component n-recognin 1	protein-coding	8.0	4.0	10.0	12.0	16.5	15.0
Merged-chr15-79377970-1	chr15	79377470	79378470	+	698.0	f1_c57bl6.idr	intron (NM_172608, intron 2 of 8)	intron (NM_172608, intron 2 of 8)	-2670.0	NR_035464	100316695.0		NR_035464	ENSMUSG00000088901	Mir1943	mir-1943|mmu-mir-1943	microRNA 1943	ncRNA	0.0	0.0	1.5	2.5	0.5	1.0
Merged-chr8-48328162-2	chr8	48327662	48328662	+	698.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011857, intron 11 of 28)	intron (NM_011857, intron 11 of 28)	218149.0	NM_001161515	320685.0	Mm.121549	NM_178788	ENSMUSG00000031562	Dctd	6030466N05Rik	dCMP deaminase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136571594-2	chr1	136571094	136572094	+	698.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53307.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30170770-1	chr7	30170270	30171270	+	698.0	f1_balb.idr	intron (NM_001033540, intron 1 of 2)	intron (NM_001033540, intron 1 of 2)	848.0	NM_001033540	330503.0	Mm.434058	NM_001033540	ENSMUSG00000066647	Gm5113	B430201F14|EG330503	predicted gene 5113	protein-coding	5.5	3.0	11.5	8.5	0.5	2.0
Merged-chr13-20093542-2	chr13	20093091	20094091	+	698.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	3084.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	2.5	1.5	10.0	10.0	1.5	4.5
Merged-chr2-130851671-1	chr2	130851171	130852171	+	698.0	f0_balb.idr	Intergenic	ID_B1|SINE|B4	-11526.0	NM_029432	228602.0	Mm.271990	NM_028367	ENSMUSG00000027309	4930402H24Rik	2810487F15Rik|AI413763|C78926	RIKEN cDNA 4930402H24 gene	protein-coding	6.0	2.0	16.5	10.5	17.5	8.0
Merged-chr6-38733653-1	chr6	38733153	38734153	+	698.0	f1_balb.idr	intron (NM_010433, intron 7 of 14)	B3|SINE|B2	70584.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-123236128-2	chr3	123235633	123236633	+	698.0	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080451)	promoter-TSS (NM_080451)	16.0	NM_080451	118449.0	Mm.34359	NM_080451	ENSMUSG00000050315	Synpo2	1110069I04Rik|2310068J10Rik|9530006G20Rik|AI848603|Myo	synaptopodin 2	protein-coding	0.0	0.0	2.5	4.0	1.5	1.5
Merged-chr2-164670464-1	chr2	164669964	164670964	+	698.0	f0_balb.idr	intron (NM_001161806, intron 1 of 4)	intron (NM_001161806, intron 1 of 4)	3623.0	NM_001161806	629761.0	Mm.389336	NM_001161806	ENSMUSG00000078940	Wfdc11	-	WAP four-disulfide core domain 11	protein-coding	2.0	9.0	10.5	1.0	5.5	4.0
Merged-chr12-112625175-2	chr12	112624675	112625675	+	698.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 1 of 12)	intron (NM_007421, intron 1 of 12)	5128.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-174196621-2	chr2	174196121	174197121	+	698.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12703.0	NR_040530	100038374.0	Mm.127249	NR_040530	ENSMUSG00000074555	Gm10714	-	predicted gene 10714	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122805660-2	chr5	122805160	122806160	+	698.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042491, intron 7 of 16)	intron (NM_001042491, intron 7 of 16)	15682.0	NM_021505	59008.0	Mm.332667	NM_021505	ENSMUSG00000029472	Anapc5	2510006G12Rik|AA408751|AA536819|AA986414|APC5|Anpc5	anaphase-promoting complex subunit 5	protein-coding	1.5	16.5	3.5	6.5	2.5	3.0
Merged-chr2-127376285-1	chr2	127375785	127376785	+	698.0	f0_c57.idr	Intergenic	Intergenic	12999.0	NM_009633	11552.0	Mm.347390	NM_009633	ENSMUSG00000058620	Adra2b	Adra-2b|[a]2B|a2b-AR|alpha2-C2|alpha2B	adrenergic receptor, alpha 2b	protein-coding	26.5	18.5	17.0	0.0	7.0	12.5
Merged-chr15-98145132-2	chr15	98144632	98145632	+	698.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170711, intron 1 of 3)	intron (NM_001170711, intron 1 of 3)	570.0	NM_030121	78541.0	Mm.200766	NM_030121	ENSMUSG00000048175	Asb8	4930539L19Rik|AI788835|C430011H06Rik	ankyrin repeat and SOCS box-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-33876100-1	chr7	33875600	33876600	+	698.0	f0_balb.idr	Intergenic	RMER20A|LTR|ERVK	68885.0	NM_178308	110187.0	Mm.155750	NM_178308	ENSMUSG00000066586	Scgb2b26	Abpbg26|Abpbg4|Abpg|C2d|Scgb2b4	secretoglobin, family 2B, member 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119853706-2	chr8	119853206	119854206	+	698.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8599.0	NM_146219	234796.0	Mm.86446	NM_146219	ENSMUSG00000031828	Klhl36	-	kelch-like 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46046635-1	chr19	46046135	46047135	+	698.0	f1_c57bl6.idr	Intergenic	Intergenic	-1324.0	NM_001113408	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	1.0	11.0	9.5	0.0	5.5	2.5
Merged-chr11-55474143-2	chr11	55473643	55474643	+	698.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013716, intron 1 of 11)	intron (NM_013716, intron 1 of 11)	4391.0	NM_013716	27041.0	Mm.39631	NM_013716	ENSMUSG00000018583	G3bp1	AI849976|B430204O07|C87777|G3bp|mKIAA4115	GTPase activating protein (SH3 domain) binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-79715190-2	chr7	79714690	79715690	+	698.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1004.0	NM_001291222	16576.0	Mm.101633	NM_010626	ENSMUSG00000050382	Kif7	-	kinesin family member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62496500-2	chr11	62496000	62497000	+	698.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039536, intron 2 of 6)	intron (NM_001039536, intron 2 of 6)	38040.0	NM_001039536	327942.0	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44131658-2	chr9	44131158	44132158	+	698.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152189, intron 1 of 1)	intron (NR_152189, intron 1 of 1)	2827.0	NR_152189	100038560.0	Mm.429758	NR_152189		Gm10687	-	predicted gene 10687	ncRNA	0.5	2.0	1.5	1.5	0.0	2.5
Merged-chr8-107587786-1	chr8	107587286	107588286	+	698.0	f0_c57.idr	intron (NM_010817, intron 1 of 6)	intron (NM_010817, intron 1 of 6)	696.0	NM_010817	17463.0	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35020301-1	chr7	35019801	35020801	+	698.0	f1_c57bl6.idr	intron (NM_008820, intron 9 of 14)	intron (NM_008820, intron 9 of 14)	36265.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.5	0.0	0.0	1.0	2.5	0.0
Merged-chr5-149242646-1	chr5	149242146	149243146	+	698.0	f0_balb.idr	Intergenic	Intergenic	-22358.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55351920-1	chr4	55351420	55352420	+	698.0	f1_balb.idr	intron (NM_009011, intron 1 of 9)	B1_Mus2|SINE|Alu	1878.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	29.5	39.0	57.0	17.0	20.5	20.5
Merged-chr2-122158270-1	chr2	122157770	122158770	+	698.0	f1_balb.idr	intron (NM_026251, intron 2 of 17)	RSINE1|SINE|B4	-2430.0	NM_080510	70928.0	Mm.379188	NM_080510	ENSMUSG00000033368	Trim69	4921519C19Rik|Rnf36|Trif|Trimless	tripartite motif-containing 69	protein-coding	6.5	6.0	17.0	5.5	6.5	6.5
Merged-chr7-19940376-2	chr7	19939876	19940876	+	698.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027308, intron 3 of 4)	intron (NM_027308, intron 3 of 4)	10367.0	NM_027308	70080.0	Mm.98583	NM_027308	ENSMUSG00000040498	Igsf23	2210010C17Rik	immunoglobulin superfamily, member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9982001-1	chr19	9981501	9982501	+	698.0	f1_c57bl6.idr	promoter-TSS (NM_010239)	promoter-TSS (NM_010239)	-645.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	23.0	98.0	43.0	26.0	73.0	49.5
Merged-chr3-116170279-3	chr3	116169758	116170758	+	698.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-40570.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	3.0	2.5	0.0	3.0	1.0	4.5
Merged-chr7-67546477-1	chr7	67545977	67546977	+	698.0	f0_balb.idr	intron (NR_028144, intron 5 of 8)	L1MC4a|LINE|L1	98759.0	NM_175124	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	3.5	2.5	7.5	0.0	6.5	3.5
Merged-chr15-35664200-1	chr15	35663700	35664700	+	698.0	f0_balb.idr	intron (NM_177151, intron 30 of 61)	intron (NM_177151, intron 30 of 61)	-3153.0	NR_030606	100124469.0		NR_030606	ENSMUSG00000077890	Mir875	Mirn875|mir-875|mmu-mir-875	microRNA 875	ncRNA	0.0	0.0	0.5	0.0	3.5	0.0
Merged-chr7-80838826-2	chr7	80838326	80839326	+	698.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23282.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-18297613-2	chr14	18297113	18298113	+	698.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009455, intron 3 of 5)	Lx5c|LINE|L1	26477.0	NM_023526	69721.0	Mm.25648	NM_023526	ENSMUSG00000021772	Nkiras1	2400004O09Rik|KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras-like protein 1	protein-coding	0.0	0.0	0.0	0.0	1.5	4.5
Merged-chr12-112624750-2	chr12	112624250	112625250	+	698.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 1 of 12)	intron (NM_007421, intron 1 of 12)	4703.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50217099-2	chr11	50216599	50217599	+	698.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6279.0	NM_011018	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73548212-2	chr14	73547712	73548712	+	698.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172527)	promoter-TSS (NM_172527)	30.0	NM_172527	214254.0	Mm.386852	NM_172527	ENSMUSG00000033405	Nudt15	6530403O17|A730068G11Rik|MTH2	nudix (nucleoside diphosphate linked moiety X)-type motif 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-78631548-2	chr14	78631049	78632049	+	698.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_104044, intron 1 of 27)	Lx8|LINE|L1	-2259.0	NM_001281794	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.0	0.0	0.5	0.0	1.5	8.0
Merged-chr17-76297812-2	chr17	76297312	76298312	+	698.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	436789.0	NR_033456	100043885.0	Mm.127562	NR_033456		Gm4710	-	predicted gene 4710	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45436728-2	chr7	45436228	45437228	+	698.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030678, intron 2 of 15)	intron (NM_030678, intron 2 of 15)	1889.0	NM_030678	14936.0	Mm.275654	NM_030678	ENSMUSG00000003865	Gys1	Gys3|MGS	glycogen synthase 1, muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9250820-2	chr4	9250335	9251335	+	698.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-18458.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	3.5	5.0	6.5	9.5	5.0	6.0
Merged-chr16-51603232-2	chr16	51602735	51603735	+	698.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	384052.0	NR_153657	629091.0	Mm.364775	NR_153657		Gm29686	-	predicted gene, 29686	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49193223-1	chr13	49192723	49193723	+	698.0	f0_c57.idr	intron (NM_013610, intron 1 of 3)	intron (NM_013610, intron 1 of 3)	5676.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-131869516-4	chr3	131869010	131870010	+	698.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-215782.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	6.5	20.0	15.5	0.0	8.0	8.5
Merged-chr15-37696446-1	chr15	37695946	37696946	+	698.0	f0_c57.idr	intron (NM_001359841, intron 1 of 7)	intron (NM_001359841, intron 1 of 7)	-15872.0	NM_001359839	52589.0	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23992472-2	chr16	23991972	23992972	+	698.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3620.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27024485-2	chr15	27023985	27024985	+	698.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-128921.0	NM_176959	448987.0	Mm.253378	NM_176959	ENSMUSG00000043556	Fbxl7	AL023057|D230018M15Rik|FBL7|Fbl6	F-box and leucine-rich repeat protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-105656375-1	chr9	105655875	105656875	+	698.0	f0_balb.idr	intron (NM_001081309, intron 6 of 19)	MTD|LTR|ERVL-MaLR	13380.0	NM_001081309	75669.0	Mm.274830	NM_029380	ENSMUSG00000032571	Pik3r4	2210010O15Rik|C730038E05Rik|C85833|D9Ertd418e|Vps15|p150	phosphoinositide-3-kinase regulatory subunit 4	protein-coding	0.5	4.5	14.0	1.5	21.0	20.0
Merged-chr11-20735166-2	chr11	20734666	20735666	+	698.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181411, intron 1 of 8)	RSINE1|SINE|B4	6390.0	NM_001290545	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47512986-1	chr19	47512486	47513486	+	698.0	f1_balb.idr	promoter-TSS (NR_045322)	promoter-TSS (NR_045322)	4.0	NR_045322	100503104.0	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA	0.0	4.5	0.0	0.0	0.0	0.0
Merged-chr17-17869195-1	chr17	17868695	17869695	+	698.0	f1_c57bl6.idr	Intergenic	Intergenic	-14007.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	25.0	79.5	48.5	21.5	59.0	45.5
Merged-chr14-8004172-3	chr14	8003677	8004677	+	697.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331064, intron 1 of 8)	intron (NM_001331064, intron 1 of 8)	1211.0	NM_001331064	66082.0	Mm.181473	NM_025341	ENSMUSG00000025277	Abhd6	0610041D24Rik|AA673485|AV065425	abhydrolase domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32788762-4	chr19	32788248	32789248	+	697.958313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 2 of 8)	intron (NM_008960, intron 2 of 8)	31171.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	27.5	114.5	106.5	41.0	63.0	84.5
Merged-chr8-115070433-3	chr8	115069935	115070935	+	697.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019573, intron 8 of 8)	intron (NM_019573, intron 8 of 8)	630783.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-66861940-3	chr1	66861431	66862431	+	697.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007381, intron 1 of 10)	intron (NM_007381, intron 1 of 10)	1378.0	NM_007381	11363.0	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-46066867-4	chr1	46066319	46067319	+	697.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160386)	promoter-TSS (NM_001160386)	81.0	NM_001160386	227058.0	Mm.296880	NM_001160386	ENSMUSG00000041144	Dnah7b	Dnahc7b|Gm107	dynein, axonemal, heavy chain 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-15961258-2	chr4	15960758	15961758	+	697.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_013752, intron 1 of 15)	B2_Mm2|SINE|B2	3291.0	NM_013752	27354.0	Mm.20866	NM_013752	ENSMUSG00000028224	Nbn	Nbs1	nibrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-61582287-2	chr2	61581787	61582787	+	697.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011529, intron 1 of 7)	B4|SINE|B4	3701.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106629043-2	chr1	106628543	106629543	+	697.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	-82412.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62896060-4	chr10	62895572	62896572	+	697.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8748.0	NM_001253857	52463.0	Mm.17774	NM_027384	ENSMUSG00000047146	Tet1	2510010B09Rik|AA517754|BB001228|Cxxc6|D10Ertd17e|LCX|mKIAA1676	tet methylcytosine dioxygenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76461383-2	chr11	76460890	76461890	+	697.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001291186, exon 4 of 18)	exon (NM_001291186, exon 4 of 18)	7075.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	5.0	11.0	9.0	10.0	0.0	3.0
Merged-chr18-36196210-2	chr18	36195710	36196710	+	697.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167891, intron 1 of 9)	intron (NM_001167891, intron 1 of 9)	950.0	NM_001167891	100042150.0	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54828756-3	chr13	54828265	54829265	+	697.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39360.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	3.0	42.0	45.0	3.5	1.5	5.0
Merged-chr3-84693045-3	chr3	84692550	84693550	+	697.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177260, intron 6 of 6)	intron (NM_177260, intron 6 of 6)	26858.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106469578-3	chr9	106469080	106470080	+	697.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001311150)	TTS (NM_001311150)	-3640.0	NM_001159652	436090.0	Mm.482905	NM_001159652	ENSMUSG00000091735	Gpr62	4933402E03Rik	G protein-coupled receptor 62	protein-coding	2.0	2.5	4.0	2.0	2.5	0.0
Merged-chr10-79851473-2	chr10	79850973	79851973	+	697.75	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029447)	TTS (NR_029447)	-2959.0	NM_001077363	19205.0	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-26932540-2	chr18	26932095	26933095	+	697.75	f0_balb.idr|f1_balb.idr	Intergenic	RLTR45|LTR|ERVK	-1178438.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-15285651-2	chr9	15285151	15286151	+	697.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359258, intron 7 of 7)	B3|SINE|B2	-5784.0	NM_144933	234959.0	Mm.44151	NM_144933	ENSMUSG00000031935	Med17	77kDa|C330002H14Rik|Crsp6|Trap80	mediator complex subunit 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107994367-2	chr3	107993858	107994858	+	697.75	f0_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-7938.0	NM_008183	14863.0	Mm.440086	NM_008183	ENSMUSG00000040562	Gstm2	Gstb-2|Gstb2	glutathione S-transferase, mu 2	protein-coding	8.5	20.5	33.5	2.0	36.5	16.5
Merged-chr15-76510968-2	chr15	76510468	76511468	+	697.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_010046, intron 1 of 16)	intron (NM_010046, intron 1 of 16)	1026.0	NM_010046	13350.0	Mm.22633	NM_010046	ENSMUSG00000022555	Dgat1	ARAT|C75990|D15Ertd23e|Dgat	diacylglycerol O-acyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-127268222-4	chr6	127267693	127268693	+	697.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39774.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0.0	2.0	0.0	0.0	1.0	0.0
Merged-chr6-97282703-1	chr6	97282203	97283203	+	697.666687	f1_balb.idr	Intergenic	Intergenic	-29923.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	2.0	20.5	10.0	1.0	10.5	1.5
Merged-chr1-105865863-5	chr1	105865339	105866339	+	697.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85116.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-3888796-3	chr18	3888296	3889296	+	697.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_A|LINE|L1	-277036.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165990698-3	chr2	165990179	165991179	+	697.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1958.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146072914-2	chr3	146072414	146073414	+	697.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172864, intron 10 of 22)	intron (NM_172864, intron 10 of 22)	35122.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152756639-3	chr1	152756133	152757133	+	697.600037	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081197, exon 2 of 2)	exon (NM_001081197, exon 2 of 2)	6082.0	NM_001081197	71281.0	Mm.158650	NM_001081197	ENSMUSG00000055547	Apobec4	4933431M11Rik	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120522862-3	chr5	120522358	120523358	+	697.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 8 of 13)	intron (NM_001177595, intron 8 of 13)	11666.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184718763-3	chr1	184718266	184719266	+	697.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040627, exon 3 of 3)	non-coding (NR_040627, exon 3 of 3)	6269.0	NR_040627	74971.0	Mm.410816	NR_040627	ENSMUSG00000092578	4930488B22Rik	-	RIKEN cDNA 4930488B22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82469532-3	chr18	82469027	82470027	+	697.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5596.0	NM_001025245	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91365920-4	chr16	91365392	91366392	+	697.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6891.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-74191101-2	chr18	74190601	74191601	+	697.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16717.0	NM_001164355	66468.0	Mm.283406	NM_025581	ENSMUSG00000036223	Ska1	2810433K01Rik|AV117428	spindle and kinetochore associated complex subunit 1	protein-coding	2.0	2.0	0.0	1.5	3.0	3.0
Merged-chr8-84742949-2	chr8	84742449	84743449	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081982, intron 2 of 9)	intron (NM_001081982, intron 2 of 9)	31420.0	NM_001081981	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	0.0	2.5	2.5	0.0	0.0	4.0
Merged-chr15-9073433-2	chr15	9072933	9073933	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040395, intron 1 of 12)	intron (NM_001040395, intron 1 of 12)	2173.0	NM_001040395	68646.0	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38638669-2	chr6	38638169	38639169	+	697.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1430.0	NM_001033171	74253.0	Mm.121859	NM_001033171	ENSMUSG00000071537	Klrg2	2310020F24Rik	killer cell lectin-like receptor subfamily G, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9921111-2	chr19	9920667	9921667	+	697.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21634.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.5	0.5	0.0	0.0	0.0	0.0
Merged-chr8-46900446-2	chr8	46899946	46900946	+	697.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR82B|LTR|ERVL	-86441.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90473353-2	chr2	90472853	90473853	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 2 of 23)	MLT1B|LTR|ERVL-MaLR	5821.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140746568-2	chr5	140746068	140747068	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 4 of 7)	intron (NM_173405, intron 4 of 7)	22441.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103786402-2	chr3	103785902	103786902	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301304, intron 1 of 15)	intron (NM_001301304, intron 1 of 15)	4873.0	NM_001301306	15257.0	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	3.0	2.5	3.5	0.0	6.5	3.0
Merged-chr13-83922446-2	chr13	83921946	83922946	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_036594, intron 2 of 2)	L1_Mus3|LINE|L1	31238.0	NR_036594	72677.0	Mm.245636	NR_036594	ENSMUSG00000100891	2810049E08Rik	-	RIKEN cDNA 2810049E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-67839271-2	chr9	67838771	67839771	+	697.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1125.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	0.5	8.0	8.5	1.0	16.0	10.5
Merged-chr18-66481835-2	chr18	66481335	66482335	+	697.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-22343.0	NR_040528	100503565.0	Mm.98256	NR_040528		Gm9926	-	predicted gene 9926	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62979651-2	chr9	62979151	62980151	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 1 of 13)	intron (NM_019663, intron 1 of 13)	1228.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106895719-2	chr9	106895210	106896210	+	697.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_153413, exon 53 of 53)	exon (NM_153413, exon 53 of 53)	-3772.0	NM_029103	74840.0	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-24600028-2	chr18	24599528	24600528	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139143, intron 2 of 9)	intron (NM_139143, intron 2 of 9)	3789.0	NM_139143	106957.0	Mm.21688	NM_139143	ENSMUSG00000024270	Slc39a6	Ermelin|Zip6	solute carrier family 39 (metal ion transporter), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142359088-2	chr7	142358588	142359588	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347541, intron 2 of 2)	intron (NM_001347541, intron 2 of 2)	13171.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.0	0.0	0.0	5.0	0.0	0.0
Merged-chr17-63871436-2	chr17	63870936	63871936	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 1 of 18)	ORR1D1|LTR|ERVL-MaLR	-6630.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59883694-2	chr15	59883194	59884194	+	697.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-88735.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	2.5	4.0	1.5	2.5	0.0	9.0
Merged-chr11-100861679-2	chr11	100861179	100862179	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011488, intron 3 of 19)	intron (NM_011488, intron 3 of 19)	1195.0	NM_001164062	20850.0	Mm.277403	NM_011488	ENSMUSG00000004043	Stat5a	AA959963|STAT5	signal transducer and activator of transcription 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80198802-3	chr12	80198375	80199375	+	697.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 4 of 20)	intron (NM_134156, intron 4 of 20)	61496.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44694770-2	chr10	44694270	44695270	+	697.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-236022.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38106699-4	chr16	38106201	38107201	+	697.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 1 of 11)	intron (NM_001347232, intron 1 of 11)	-17441.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	20.5	24.5	33.5	20.0	27.5	29.5
Merged-chr17-81378599-2	chr17	81378099	81379099	+	697.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_104580, exon 9 of 9)	non-coding (NR_104580, exon 9 of 9)	-313514.0	NM_028138	72167.0	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149655261-2	chr4	149654761	149655761	+	697.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105990)	TTS (NR_105990)	306.0	NR_105990	102465983.0		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	0.0	0.0	2.5	0.0	7.0	0.0
Merged-chr10-78298807-2	chr10	78298307	78299307	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053014, intron 2 of 9)	intron (NM_053014, intron 2 of 9)	41400.0	NR_106119	102465765.0		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18906824-2	chr2	18906324	18907324	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 2 of 9)	intron (NM_008845, intron 2 of 9)	91297.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33561401-2	chr16	33560901	33561901	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 4 of 11)	MIRb|SINE|MIR	42806.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113008241-2	chr5	113007741	113008741	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	7297.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	0.0	0.0	4.5	2.5	2.0	5.5
Merged-chr11-51919616-2	chr11	51919116	51920116	+	697.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-48015.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64792318-2	chr17	64791818	64792818	+	697.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	25207.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167668649-2	chr2	167668149	167669149	+	697.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7105.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-69533388-2	chr17	69532888	69533888	+	697.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94062.0	NM_001145192	320722.0	Mm.400254	NM_001145192	ENSMUSG00000091636	Akain1	A330050F15Rik	A kinase (PRKA) anchor inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65254090-2	chr5	65253590	65254590	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359879, intron 31 of 35)	intron (NM_001359879, intron 31 of 35)	54394.0	NM_153391	213081.0	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-24493101-2	chr14	24492601	24493601	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207634, intron 3 of 4)	intron (NM_207634, intron 3 of 4)	2348.0	NM_001360586	20088.0	Mm.16775	NM_011297	ENSMUSG00000025290	Rps24	-	ribosomal protein S24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158142712-2	chr2	158142212	158143212	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 2 of 12)	intron (NM_009373, intron 2 of 12)	3680.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152113058-2	chr2	152112558	152113558	+	697.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7534.0	NM_029688	76650.0	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117399330-2	chr8	117398830	117399830	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 3 of 20)	intron (NM_028941, intron 3 of 20)	50160.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29513851-2	chr19	29513351	29514351	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_015567, intron 2 of 3)	intron (NR_015567, intron 2 of 3)	8136.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132129102-2	chr1	132128602	132129602	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008795, intron 1 of 15)	B1F2|SINE|Alu	10583.0	NM_008795	18557.0	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-142007253-2	chr4	142006753	142007753	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 1 of 31)	intron (NM_177868, intron 1 of 31)	4398.0	NM_177868	329977.0	Mm.252019	NM_028429	ENSMUSG00000051435	Fhad1	2900090M10Rik|B230311F11	forkhead-associated (FHA) phosphopeptide binding domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-137951006-2	chr3	137950506	137951506	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 3 of 8)	L2a|LINE|L2	30543.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72275422-2	chr5	72274922	72275922	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 15 of 22)	intron (NR_003966, intron 15 of 22)	72079.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-73038055-2	chr16	73037555	73038555	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019413, intron 27 of 28)	MTEb|LTR|ERVL-MaLR	374906.0	NM_019413	19876.0	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54093786-2	chr11	54093286	54094286	+	697.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7138.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-33254588-2	chr14	33254088	33255088	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 2 of 10)	B1_Mm|SINE|Alu	37765.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102401235-2	chr12	102400735	102401735	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 8 of 13)	intron (NM_011175, intron 8 of 13)	38578.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	2.5	1.0	2.0	2.5	1.0	2.0
Merged-chr4-155208098-2	chr4	155207598	155208598	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	14437.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	7.0	9.5	10.0	1.0	9.5	4.0
Merged-chr19-3937810-2	chr19	3937310	3938310	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019449, intron 3 of 10)	intron (NM_019449, intron 3 of 10)	2624.0	NM_001161428	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0.0	0.0	9.0	0.0	0.0	8.0
Merged-chr13-90924473-2	chr13	90923959	90924959	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024175, intron 3 of 3)	AT_rich|Low_complexity|Low_complexity	1337.0	NM_024175	66475.0	Mm.306302	NM_024175	ENSMUSG00000049517	Rps23	2410044J15Rik	ribosomal protein S23	protein-coding	8.5	38.0	28.5	26.5	47.5	27.0
Merged-chr15-97817178-3	chr15	97816682	97817682	+	697.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	-2319.0	NM_001204281	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25516097-2	chr9	25515597	25516597	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	34500.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139820210-2	chr5	139819710	139820710	+	697.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5927.0	NM_001161548	231832.0	Mm.482655	NM_144914	ENSMUSG00000036687	Tmem184a	Sdmg1	transmembrane protein 184a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-67579976-2	chr11	67579476	67580476	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008088, intron 1 of 13)	intron (NM_008088, intron 1 of 13)	-6524.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	4.5	0.0	1.0	6.0	0.0	1.0
Merged-chr10-81471393-2	chr10	81470893	81471893	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176954, intron 2 of 11)	intron (NM_176954, intron 2 of 11)	1738.0	NM_001311127	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-104223904-3	chr12	104223431	104224431	+	697.488892	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009251, intron 3 of 6)	intron (NM_009251, intron 3 of 6)	9298.0	NM_001033335	238393.0	Mm.483584	NM_001033335	ENSMUSG00000066363	Serpina3f	2A1|BC049975	serine (or cysteine) peptidase inhibitor, clade A, member 3F	protein-coding	15.5	32.0	22.5	13.0	39.0	33.5
Merged-chr14-36316881-3	chr14	36316382	36317382	+	697.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	221917.0	NM_175008	218921.0	Mm.212464	NM_175008	ENSMUSG00000096405	4930474N05Rik	-	RIKEN cDNA 4930474N05 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125759154-3	chr8	125758631	125759631	+	697.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175561, exon 32 of 34)	exon (NM_175561, exon 32 of 34)	24928.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104901608-3	chr3	104901087	104902087	+	697.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253702, intron 11 of 13)	intron (NM_001253702, intron 11 of 13)	37081.0	NM_001253702	229681.0	Mm.206379	NM_153091	ENSMUSG00000045576	St7l	St7r	suppression of tumorigenicity 7-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118858661-3	chr9	118858132	118859132	+	697.3555299999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 9 of 13)	intron (NM_001113514, intron 9 of 13)	-67904.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-137309330-2	chr7	137308830	137309830	+	697.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_010096, exon 5 of 16)	exon (NM_010096, exon 5 of 16)	5115.0	NM_001113415	13593.0	Mm.258708	NM_010096	ENSMUSG00000010476	Ebf3	3110018A08Rik|O/E-2|mKIAA4201	early B cell factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11897804-2	chr11	11897304	11898304	+	697.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190448, intron 1 of 14)	intron (NM_001190448, intron 1 of 14)	340.0	NM_001190448	13195.0	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21279022-2	chr16	21278522	21279522	+	697.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_046162, intron 3 of 4)	intron (NR_046162, intron 3 of 4)	17850.0	NR_046162	328646.0	Mm.404748	NR_046162	ENSMUSG00000096918	Gm16863	A830060N17	predicted gene, 16863	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81508301-2	chr10	81507801	81508801	+	697.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010304, intron 5 of 6)	intron (NM_010304, intron 5 of 6)	-8164.0	NM_010102	13611.0	Mm.33065	NM_010102	ENSMUSG00000044199	S1pr4	Edg6|Lpc1|S1p4	sphingosine-1-phosphate receptor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43495582-3	chr7	43495085	43496085	+	697.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028737, intron 7 of 7)	intron (NM_028737, intron 7 of 7)	-5562.0	NM_001164518	210094.0	Mm.228087	NM_001164518	ENSMUSG00000013367	Iglon5	A230106M20Rik|Gm1431	IgLON family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-77740659-3	chr1	77740160	77741160	+	697.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TAAA)n|Simple_repeat|Simple_repeat	-225572.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	6.5	4.5	12.5	3.0	7.0	7.0
Merged-chr5-65198969-3	chr5	65198475	65199475	+	697.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153391)	promoter-TSS (NM_153391)	-721.0	NM_001359880	213081.0	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79444878-2	chr12	79444378	79445378	+	697.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	147527.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-48435849-3	chr6	48435345	48436345	+	697.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001085415)	TTS (NM_001085415)	9245.0	NM_001085415	68910.0	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	6.0	15.0	11.5	6.5	34.5	4.0
Merged-chr6-124993014-3	chr6	124992543	124993543	+	697.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3677.0	NM_175696	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	0.0	10.5	4.5	1.5	21.0	11.0
Merged-chr9-37454717-3	chr9	37454201	37455201	+	697.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21526.0	NM_001164767	19649.0	Mm.212826	NM_011248	ENSMUSG00000032128	Robo3	Rbig1|Rig-1|Rig1|Robo3a|Robo3b	roundabout guidance receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84427497-3	chr2	84426995	84427995	+	697.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2229.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-54910970-3	chr1	54910471	54911471	+	697.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	15416.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87652396-2	chr1	87651848	87652848	+	697.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	RLTR11A2|LTR|ERVK	32036.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64243375-4	chr1	64242856	64243856	+	697.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-121967.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-23668568-2	chr9	23668068	23669068	+	697.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44B|LTR|ERVK	-429450.0	NM_175678	319239.0	Mm.130824	NM_175678	ENSMUSG00000043659	Npsr1	9330128H10Rik|GPRA|Gpr154|MVTR|PGR14|VRR1	neuropeptide S receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-52100666-2	chr11	52100173	52101173	+	697.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_019411, intron 1 of 6)	intron (NM_019411, intron 1 of 6)	1849.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-31756272-3	chr19	31755798	31756798	+	697.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013833, intron 1 of 17)	intron (NM_001013833, intron 1 of 17)	8735.0	NM_001013833	19091.0	Mm.381170	NM_011160	ENSMUSG00000052920	Prkg1	AW125416|CGKI|Gm19690|Prkg1b|Prkgr1b	protein kinase, cGMP-dependent, type I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-5206255-3	chr5	5205768	5206768	+	697.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 4 of 14)	intron (NM_011074, intron 4 of 14)	59800.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	2.0	2.0	1.0	2.0	5.0	1.0
Merged-chr9-85330566-2	chr9	85330066	85331066	+	697.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3416.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0.5	1.5	1.5	0.5	2.5	5.5
Merged-chr3-41530841-3	chr3	41530350	41531350	+	697.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2376.0	NR_130791	78648.0	Mm.366093	NR_130791		2400006E01Rik	Gm43733|lncRNA-JADE	RIKEN cDNA 2400006E01 gene	ncRNA	0.0	5.5	5.5	4.0	17.0	9.5
Merged-chr10-25250381-2	chr10	25249881	25250881	+	697.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 5 of 7)	intron (NM_018747, intron 5 of 7)	48782.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73633851-3	chr12	73633322	73634322	+	697.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	L1MC3|LINE|L1	49026.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	3.0	2.0	3.5	3.0	10.0	4.0
Merged-chr9-99200511-3	chr9	99200023	99201023	+	697.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36716.0	NM_001244762	623459.0	Mm.260891	NM_001244762	ENSMUSG00000096316	Faiml	EG623459|Gm6432	Fas apoptotic inhibitory molecule like	protein-coding	3.0	1.0	11.5	8.0	0.0	1.5
Merged-chr7-127896629-2	chr7	127896129	127897129	+	697.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1012.0	NM_178600	27973.0	Mm.29703	NM_178600	ENSMUSG00000096145	Vkorc1	D7Wsu86e	vitamin K epoxide reductase complex, subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12668010-3	chr15	12667500	12668500	+	697.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75444.0	NM_001081064	68070.0	Mm.423205	NM_001081064	ENSMUSG00000022197	Pdzd2	4930537L06Rik|A930022H17Rik|Gm21706|Gm82|Pdzk3|mKIAA0300	PDZ domain containing 2	protein-coding	8.0	15.5	3.0	7.0	9.0	9.5
Merged-chr15-94948314-2	chr15	94947814	94948814	+	697.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_178789, intron 5 of 7)	intron (NM_178789, intron 5 of 7)	201004.0	NR_015482	100043315.0	Mm.159041	NR_015482	ENSMUSG00000100603	LOC100043315	-	uncharacterized LOC100043315	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45753790-2	chr17	45753290	45754290	+	697.166687	f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	IMPB_01|Satellite|Satellite	19284.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	0.0	3.0	1.0	0.0	4.5	3.5
Merged-chr17-36182549-2	chr17	36182045	36183045	+	697.166626	f0_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	3768.0	NR_033619	625785.0	Mm.390996	NR_033619		Gm6623	EG625785	akirin 1 pseudogene	pseudo	0.5	0.0	0.5	0.0	0.0	0.0
Merged-chr2-122138014-2	chr2	122137514	122138514	+	697.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026251, intron 2 of 17)	intron (NM_026251, intron 2 of 17)	-9673.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	7.5	7.0	5.0	5.0	0.5	4.0
Merged-chr10-119054378-2	chr10	119053878	119054878	+	697.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-3879.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25781529-2	chr8	25781029	25782029	+	697.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026121, intron 1 of 4)	B3|SINE|B2	3680.0	NM_026121	67384.0	Mm.118400	NM_026121	ENSMUSG00000037316	Bag4	2410112I15Rik|SODD	BCL2-associated athanogene 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148488274-3	chr2	148487821	148488821	+	697.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-44786.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154943271-2	chr2	154942776	154943776	+	697.049988	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-50370.0	NM_026030	67204.0	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	0.0	0.0	3.0	1.0	9.5	3.0
Merged-chr19-36909943-2	chr19	36909443	36910443	+	697.025024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9656.0	NM_028263	72514.0	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	0.0	0.5	0.0	2.5	0.0	0.0
Merged-chr4-132473146-2	chr4	132472646	132473646	+	697.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9225.0	NM_026039	67219.0	Mm.45929	NM_026039	ENSMUSG00000066042	Med18	2810046C01Rik	mediator complex subunit 18	protein-coding	0.0	0.0	3.5	0.0	0.0	3.5
Merged-chr11-75623098-2	chr11	75622593	75623593	+	697.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_008850, intron 10 of 11)	intron (NM_008850, intron 10 of 11)	-7927.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	5.0	4.0	1.5	1.5	2.0	5.5
Merged-chr3-108901117-1	chr3	108900617	108901617	+	697.0	f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	10612.0	NM_025845	66921.0	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	24.0	20.5	25.5	22.0	33.5	28.0
Merged-chr4-86823366-3	chr4	86822869	86823869	+	697.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_184088, intron 21 of 31)	B3|SINE|B2	33998.0	NM_009096	20104.0	Mm.379007	NM_009096	ENSMUSG00000028495	Rps6	S6R	ribosomal protein S6	protein-coding	0.0	0.0	0.0	1.0	0.0	0.5
Merged-chr11-101987736-2	chr11	101987236	101988236	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029287, intron 1 of 5)	intron (NM_029287, intron 1 of 5)	680.0	NM_029287	75437.0	Mm.108632	NM_029287	ENSMUSG00000010841	1700006E09Rik	Cfap97d1	RIKEN cDNA 1700006E09 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-41378131-1	chr12	41377631	41378631	+	697.0	f0_balb.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	107926.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-27757038-2	chr5	27756538	27757538	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018878, intron 12 of 20)	intron (NM_018878, intron 12 of 20)	34512.0	NM_018878	55982.0	Mm.277190	NM_018878	ENSMUSG00000002221	Paxip1	D5Ertd149e|PTIP	PAX interacting (with transcription-activation domain) protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43456449-1	chr4	43455949	43456949	+	697.0	f1_balb.idr	Intergenic	B2_Mm1t|SINE|B2	-1823.0	NM_007654	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr5-8953922-1	chr5	8953422	8954422	+	697.0	f0_balb.idr	intron (NM_008830, intron 25 of 27)	intron (NM_008830, intron 25 of 27)	43224.0	NM_023733	74114.0	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132073525-2	chr4	132073025	132074025	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128607, intron 1 of 17)	intron (NM_001128607, intron 1 of 17)	-1428.0	NM_183428	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90831209-3	chr16	90830732	90831732	+	697.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_133572, exon 1 of 6)	non-coding (NR_133572, exon 1 of 6)	373.0	NM_001316761	70967.0	Mm.253077	NM_027627	ENSMUSG00000039903	Eva1c	1700092M14Rik|4931408A02Rik|Fam176c	eva-1 homolog C (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91923490-2	chr2	91922990	91923990	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007699, intron 1 of 1)	intron (NM_007699, intron 1 of 1)	1301.0	NM_007699	12672.0	Mm.330405	NM_007699	ENSMUSG00000040495	Chrm4	Chrm-4|M4	cholinergic receptor, muscarinic 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-108332588-2	chr10	108332088	108333088	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054056, intron 1 of 6)	CpG	399.0	NM_054056	114774.0	Mm.391419	NM_054056	ENSMUSG00000035873	Pawr	2310001G03Rik|PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45467908-2	chr7	45467408	45468408	+	697.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1010.0	NM_007527	12028.0	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91210698-2	chr2	91210198	91211198	+	697.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028119)	TTS (NM_028119)	7786.0	NM_007387	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107543071-2	chr9	107542571	107543571	+	697.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357289)	promoter-TSS (NM_001357289)	862.0	NM_018879	56032.0	Mm.11337	NM_018879	ENSMUSG00000010057	Nprl2	2810446G01Rik|G21|NPR2L|Tusc4	nitrogen permease regulator-like 2	protein-coding	2.0	3.5	0.5	1.0	1.5	1.0
Merged-chr8-119817119-2	chr8	119816619	119817619	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 3 of 3)	intron (NM_028071, intron 3 of 3)	23460.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26138422-2	chr2	26137922	26138922	+	697.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001256522, exon 2 of 2)	exon (NM_001256522, exon 2 of 2)	1121.0	NM_001256522	109299.0	Mm.389259	NM_001256521		Tmem250-ps	AI551216|C330006A16Rik	transmembrane protein 250, pseudogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-127165797-2	chr6	127165297	127166297	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040275, intron 1 of 1)	intron (NR_040275, intron 1 of 1)	-14749.0	NM_009829	12444.0	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128556612-2	chr10	128556112	128557112	+	697.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-7444.0	NM_018860	67945.0	Mm.290786	NM_018860	ENSMUSG00000093674	Rpl41	1810055P16Rik|2210411K19Rik	ribosomal protein L41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-26309845-2	chr15	26309345	26310345	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177597, intron 1 of 3)	intron (NM_177597, intron 1 of 3)	797.0	NM_001310774	211147.0	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-143294828-2	chr6	143294328	143295328	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027803, intron 3 of 3)	RSINE1|SINE|B4	48940.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69678824-2	chr11	69678324	69679324	+	697.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163571, exon 3 of 11)	exon (NM_001163571, exon 3 of 11)	3146.0	NM_030702	80886.0	Mm.284592	NM_030702	ENSMUSG00000005204	Senp3	AA408656|Smt3ip|Smt3ip1	SUMO/sentrin specific peptidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75366636-1	chr7	75366136	75367136	+	697.0	f0_balb.idr	Intergenic	Intergenic	-57374.0	NM_153579	64176.0	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75445691-2	chr11	75445191	75446191	+	697.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_138950, exon 7 of 10)	exon (NM_138950, exon 7 of 10)	-6190.0	NM_008878	18816.0	Mm.279733	NM_008878	ENSMUSG00000038224	Serpinf2	AI747498|Pli|Serpimf2	serine (or cysteine) peptidase inhibitor, clade F, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76194831-2	chr14	76194331	76195331	+	697.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-56631.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9634976-3	chr13	9634480	9635480	+	697.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 30 of 36)	intron (NM_001081426, intron 30 of 36)	128830.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99031878-2	chr10	99031378	99032378	+	697.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75204.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46490029-2	chr4	46489529	46490529	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053179, intron 1 of 5)	intron (NM_053179, intron 1 of 5)	700.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5475894-2	chr2	5475394	5476394	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290375, intron 2 of 10)	intron (NM_001290375, intron 2 of 10)	96504.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	5.5	3.5	6.0	4.0	2.5	0.0
Merged-chr18-56926325-2	chr18	56925825	56926825	+	697.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177115)	promoter-TSS (NM_177115)	-777.0	NM_177115	320253.0	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82353819-1	chr15	82353319	82354319	+	697.0	f1_c57bl6.idr	intron (NM_025987, intron 1 of 2)	intron (NM_025987, intron 1 of 2)	472.0	NM_025987	67130.0	Mm.27570	NM_025987	ENSMUSG00000022450	Ndufa6	14kDa|2700038D15Rik|B230217P19Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)	protein-coding	1.0	10.5	16.5	3.5	31.5	18.0
Merged-chr7-139453475-2	chr7	139452975	139453975	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355162, intron 1 of 15)	intron (NM_001355162, intron 1 of 15)	52981.0	NM_001355162	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128658958-2	chr4	128658458	128659458	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	4256.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33807630-2	chr17	33807130	33808130	+	697.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17D2|LTR|ERVK	-2893.0	NM_001357162	80880.0	Mm.196330	NM_030697	ENSMUSG00000042099	Kank3	0610013D04Rik|Ankrd47|D17Ertd288e|NG28	KN motif and ankyrin repeat domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-4192083-2	chr5	4191583	4192583	+	697.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042670)	promoter-TSS (NM_001042670)	-284.0	NM_001042670	208595.0	Mm.129815	NM_001042670	ENSMUSG00000053178	Mterf1b	Gm9897	mitochondrial transcription termination factor 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125765339-2	chr8	125764839	125765839	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175561, intron 28 of 33)	MTEb|LTR|ERVL-MaLR	31136.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25229541-2	chr2	25229041	25230041	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080854, intron 12 of 12)	intron (NM_080854, intron 12 of 12)	4693.0	NM_080854	142681.0	Mm.346652	NM_080854	ENSMUSG00000006469	Slc34a3	AI649385|Npt2c|Npt2c-v1|NptIIc|naPi-2c	solute carrier family 34 (sodium phosphate), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70613111-1	chr8	70612611	70613611	+	697.0	f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-3733.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	27.5	64.5	29.5	44.0	42.5	19.0
Merged-chr7-125574003-2	chr7	125573503	125574503	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008700, intron 8 of 10)	ID_B1|SINE|B4	21721.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	0.0	2.0	0.5	6.0	0.0	2.0
Merged-chr7-30355356-1	chr7	30354856	30355856	+	697.0	f1_balb.idr	TTS (NM_175478)	TTS (NM_175478)	7416.0	NM_175478	233067.0	Mm.23157	NM_175478	ENSMUSG00000036957	Lrfn3	A530045B06Rik|SALM4	leucine rich repeat and fibronectin type III domain containing 3	protein-coding	0.0	0.0	0.0	0.0	4.0	0.0
Merged-chr4-150619418-1	chr4	150618918	150619918	+	697.0	f1_balb.idr	intron (NM_001085492, intron 22 of 22)	intron (NM_001085492, intron 22 of 22)	32756.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.5	10.0	0.0	0.0	1.5	0.0
Merged-chr10-17406588-3	chr10	17406126	17407126	+	697.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTG)n|Simple_repeat|Simple_repeat	-310844.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0.0	1.5	6.5	18.0	11.0	14.0
Merged-chr9-99358504-1	chr9	99358004	99359004	+	697.0	f0_balb.idr	promoter-TSS (NM_177775)	promoter-TSS (NM_177775)	26.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105460630-2	chr8	105460130	105461130	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033371, intron 9 of 10)	intron (NM_001033371, intron 9 of 10)	10792.0	NM_026481	67971.0	Mm.29358	NM_026481	ENSMUSG00000014846	Tppp3	2700055K07Rik|CGI-38|Ceacam9|mmCGM8	tubulin polymerization-promoting protein family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27278361-1	chr3	27277861	27278861	+	697.0	f0_balb.idr	Intergenic	Intergenic	-38716.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114994644-1	chr11	114994144	114995144	+	697.0	f1_balb.idr	Intergenic	RLTR13B1|LTR|ERVK	-4758.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	29.0	59.0	46.5	40.5	56.5	53.0
Merged-chr13-99185879-2	chr13	99185379	99186379	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	1056.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	18.0	57.0	54.0	27.0	50.5	22.5
Merged-chr12-110497724-2	chr12	110497224	110498224	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081457, intron 1 of 12)	intron (NM_001081457, intron 1 of 12)	11985.0	NM_012023	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68892691-2	chr11	68892191	68893191	+	697.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177060, exon 3 of 3)	exon (NM_177060, exon 3 of 3)	4138.0	NM_177060	320040.0	Mm.305696	NM_177060	ENSMUSG00000046490	Rnf222	9930039A11Rik	ring finger protein 222	protein-coding	0.0	4.5	0.0	1.0	4.0	0.0
Merged-chr3-34664131-3	chr3	34663586	34664586	+	697.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015580, intron 4 of 4)	CpG	14091.0	NM_011443	20674.0	Mm.65396	NM_011443	ENSMUSG00000074637	Sox2	Sox-2|lcc|ysb	SRY (sex determining region Y)-box 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75914183-2	chr11	75913683	75914683	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291159, intron 1 of 4)	intron (NM_001291159, intron 1 of 4)	-3124.0	NM_029548	380714.0	Mm.425697	NM_029548	ENSMUSG00000020847	Rph3al	Gm1753|Noc2	rabphilin 3A-like (without C2 domains)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-95656824-2	chr1	95656324	95657324	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159745, intron 2 of 3)	intron (NM_001159745, intron 2 of 3)	10770.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81128641-2	chr10	81128141	81129141	+	697.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7630.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-22158971-1	chr10	22158471	22159471	+	697.0	f0_balb.idr	intron (NM_001359809, intron 1 of 7)	intron (NM_001359809, intron 1 of 7)	362.0	NM_009016	19368.0	Mm.458004	NM_009016		Raet1a	RAE-1alpha|Rae1alpha|Raet1	retinoic acid early transcript 1, alpha	protein-coding	0.0	2.0	1.5	0.0	2.0	0.5
Merged-chr8-113653999-2	chr8	113653499	113654499	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029139, intron 7 of 11)	intron (NM_029139, intron 7 of 11)	10786.0	NM_001048145	668110.0	Mm.390078	NM_029139	ENSMUSG00000033409	Syce1l	4930481F22Rik|MMRP|PSESS|mmrp2	synaptonemal complex central element protein 1 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91776731-2	chr6	91776231	91777231	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159507, intron 17 of 23)	intron (NM_001159507, intron 17 of 23)	30662.0	NM_001159507	243547.0	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83796212-2	chr6	83795713	83796713	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164187, intron 1 of 9)	B1_Mus1|SINE|Alu	1055.0	NM_001164187	56174.0	Mm.190650	NM_019542	ENSMUSG00000034744	Nagk	Gnk	N-acetylglucosamine kinase	protein-coding	13.5	26.0	11.5	2.0	38.0	18.5
Merged-chr10-42330782-2	chr10	42330282	42331282	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359297, intron 9 of 11)	intron (NM_001359297, intron 9 of 11)	-54040.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78435917-2	chr17	78435417	78436417	+	697.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16D|LTR|ERVL	-17765.0	NM_001285940	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80433467-2	chr12	80432964	80433964	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177267, intron 1 of 8)	intron (NM_177267, intron 1 of 8)	3137.0	NM_177267	320808.0	Mm.220310	NM_177267	ENSMUSG00000049106	Dcaf5	9430020B07Rik|AI325023|AI430035|AI848110|AW124614|BCRG2|BCRP2|Wdr22	DDB1 and CUL4 associated factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-48829279-3	chr16	48828775	48829775	+	697.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12419.0	NM_023881	57263.0	Mm.21123	NM_023881	ENSMUSG00000022650	Retnlb	9030012B21Rik|Fizz2|RELMbeta|Relmb|Xcp3	resistin like beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8724587-2	chr19	8724087	8725087	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_002896, intron 3 of 9)	intron (NR_002896, intron 3 of 9)	1100.0	NR_002896	83673.0	Mm.292489	NR_002896	ENSMUSG00000108414	Snhg1	-	small nucleolar RNA host gene 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102292734-2	chr12	102292234	102293234	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	9093.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	5.5	2.0	0.0	0.0	0.0	0.0
Merged-chr9-118900218-1	chr9	118899718	118900718	+	697.0	f1_c57bl6.idr	3' UTR (NM_133721, exon 28 of 28)	3' UTR (NM_133721, exon 28 of 28)	-26318.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	1.0	0.0	0.0	0.0	0.0	5.0
Merged-chr15-101174425-2	chr15	101173925	101174925	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007395, intron 1 of 8)	CpG	353.0	NM_007395	11479.0	Mm.308467	NM_007395	ENSMUSG00000000532	Acvr1b	6820432J04|ALK-4|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-50888111-3	chr2	50887619	50888619	+	697.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-21565.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157365908-2	chr2	157365408	157366408	+	697.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-1686.0	NM_026968	69161.0	Mm.228619	NM_026968	ENSMUSG00000063019	Manbal	1810024K12Rik|AI836500	mannosidase, beta A, lysosomal-like	protein-coding	0.0	4.0	10.0	3.5	5.5	11.5
Merged-chr4-133402176-2	chr4	133401676	133402676	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016981, intron 1 of 11)	intron (NM_016981, intron 1 of 11)	32400.0	NR_039582	100628620.0		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	4.5	15.5	9.0	4.5	15.5	6.5
Merged-chr16-10846657-4	chr16	10846142	10847142	+	696.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11583.0	NM_001162932	223970.0	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-23827273-3	chr1	23826771	23827771	+	696.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172124, intron 2 of 3)	intron (NM_172124, intron 2 of 3)	65345.0	NM_172124	280645.0	Mm.471661	NM_172124	ENSMUSG00000026156	B3gat2	GlcAT-S|Glcats	beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17508312-2	chr16	17507812	17508812	+	696.916687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025808)	promoter-TSS (NM_025808)	-371.0	NM_001331227	66863.0	Mm.161726	NM_025808	ENSMUSG00000022761	Lztr1	1200003E21Rik|AI591627|AW550890	leucine-zipper-like transcriptional regulator, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81956754-2	chr15	81956254	81957254	+	696.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013872, intron 2 of 7)	intron (NM_013872, intron 2 of 7)	4176.0	NM_001282040	29858.0	Mm.18939	NM_013872	ENSMUSG00000022474	Pmm1	C77612	phosphomannomutase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-56176003-3	chr13	56175444	56176444	+	696.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001168615, exon 3 of 3)	3' UTR (NM_001168615, exon 3 of 3)	2941.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	7.0	10.5	23.0	2.0	20.5	16.0
Merged-chr11-102191036-3	chr11	102190564	102191564	+	696.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175935, intron 1 of 5)	intron (NM_175935, intron 1 of 5)	1365.0	NM_175935	68401.0	Mm.22385	NM_175935	ENSMUSG00000034793	G6pc3	0710001K01Rik|AU019276|AU045429|AV128920|AW545836|UGRP	glucose 6 phosphatase, catalytic, 3	protein-coding	4.0	6.5	15.0	4.0	14.0	7.0
Merged-chr19-47455228-2	chr19	47454729	47455729	+	696.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	9182.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0.5	0.5	1.0	9.5	1.5	7.5
Merged-chr6-131269029-2	chr6	131268529	131269529	+	696.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-21667.0	NM_008462	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	21.0	55.5	35.5	28.5	50.0	37.0
Merged-chr8-25974891-2	chr8	25974404	25975404	+	696.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029884, intron 1 of 17)	intron (NM_029884, intron 1 of 17)	1840.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	66.5	130.5	113.5	40.0	37.0	27.5
Merged-chr4-53063925-2	chr4	53063425	53064425	+	696.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 30 of 49)	intron (NM_013454, intron 30 of 49)	52045.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30976912-2	chr16	30976412	30977412	+	696.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 3 of 3)	intron (NM_198626, intron 3 of 3)	104520.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131096638-3	chr2	131096135	131097135	+	696.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-9870.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	10.0	22.5	18.0	14.0	30.5	11.5
Merged-chr10-121368180-2	chr10	121367680	121368680	+	696.8000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 1 of 13)	intron (NM_029364, intron 1 of 13)	3090.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	11.5	50.5	28.5	12.0	54.5	22.0
Merged-chr9-25549377-3	chr9	25548872	25549872	+	696.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 3 of 7)	intron (NM_026189, intron 3 of 7)	67775.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121281040-2	chr14	121280576	121281576	+	696.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_134082, intron 26 of 26)	intron (NM_134082, intron 26 of 26)	32370.0	NR_155502	320268.0	Mm.435974	NR_155502		B930095G15Rik	-	RIKEN cDNA B930095G15 gene	ncRNA	7.5	6.5	3.5	1.0	9.0	2.0
Merged-chr13-112995772-4	chr13	112995273	112996273	+	696.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037914, intron 3 of 6)	intron (NM_001037914, intron 3 of 6)	1905.0	NM_001037914	622408.0	Mm.360976	NM_001037914	ENSMUSG00000074651	Mcidas	EG622408|Gm6320|Idas|Mci|Mcin	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105924510-2	chr1	105924010	105925010	+	696.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR16|LTR|ERVK	65772.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88161616-2	chr8	88161116	88162116	+	696.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172757, intron 11 of 14)	B3|SINE|B2	23410.0	NR_106039	102465649.0		NR_106039	ENSMUSG00000099080	Mir7071	Gm27623|mmu-mir-7071	microRNA 7071	ncRNA	0.0	0.0	2.0	0.0	0.0	3.5
Merged-chr11-103225056-2	chr11	103224556	103225556	+	696.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_016896, exon 13 of 16)	exon (NM_016896, exon 13 of 16)	-6624.0	NM_177801	328019.0	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97944695-4	chr7	97944193	97945193	+	696.737488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177696, intron 1 of 17)	L1_Mur3|LINE|L1	24735.0	NM_177696	233537.0	Mm.375772	NM_177696	ENSMUSG00000035582	Gdpd4	4921513O04	glycerophosphodiester phosphodiesterase domain containing 4	protein-coding	4.0	0.0	2.0	0.0	1.5	5.0
Merged-chr14-22739775-3	chr14	22739278	22740278	+	696.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-196980.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66231788-3	chr14	66231302	66232302	+	696.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-17978.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40264090-3	chr9	40263589	40264589	+	696.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5127.0	NM_001083917	235281.0	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	0.0	4.5	5.5	0.0	1.5	0.0
Merged-chr10-93791264-3	chr10	93790774	93791774	+	696.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B1|LTR|ERVK	-40281.0	NM_001206851	327799.0	Mm.491598	NM_183199	ENSMUSG00000020020	Usp44	E430004F17Rik	ubiquitin specific peptidase 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-91253197-3	chr15	91252697	91253697	+	696.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-61190.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-113716361-3	chr7	113715840	113716840	+	696.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49658.0	NM_145584	233744.0	Mm.334160	NM_145584	ENSMUSG00000038156	Spon1	AI666765|AW455831|BC020531|D330035F22Rik|FSP	spondin 1, (f-spondin) extracellular matrix protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92903044-3	chr1	92902490	92903490	+	696.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172850)	promoter-TSS (NM_172850)	-84.0	NM_001347091	241158.0	Mm.108280	NM_172850	ENSMUSG00000034212	Ankmy1	4930483I10Rik|ZMYND13	ankyrin repeat and MYND domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117832866-3	chr10	117832384	117833384	+	696.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	GA-rich|Low_complexity|Low_complexity	13090.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-135195073-2	chr6	135194569	135195569	+	696.666626	f0_c57.idr|f1_c57bl6.idr	TTS (NR_040296)	TTS (NR_040296)	-2918.0	NM_001362110	74525.0	Mm.34182	NM_028982	ENSMUSG00000030207	Fam234b	8430419L09Rik|mKIAA1467	family with sequence similarity 234, member B	protein-coding	20.0	15.5	28.0	2.0	0.5	2.0
Merged-chr10-42055490-2	chr10	42054990	42055990	+	696.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	-37108.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102762037-2	chr15	102761537	102762537	+	696.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15128.0	NR_104334	102216269.0		NR_104334		Gm38436	Cistr|Cistr-act	predicted gene, 38436	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44175998-5	chr9	44175472	44176472	+	696.633301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 2 of 15)	intron (NM_007619, intron 2 of 15)	41314.0	NM_001359530	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	3.5	4.5	7.0	3.0	13.5	4.5
Merged-chr11-21048187-4	chr11	21047702	21048702	+	696.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43122.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67105110-3	chr10	67104574	67105574	+	696.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8086.0	NM_178606	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173528172-3	chr2	173527637	173528637	+	696.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028158, intron 3 of 3)	intron (NM_028158, intron 3 of 3)	5545.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	25.5	37.0	26.0	14.0	47.5	48.5
Merged-chr11-3292215-3	chr11	3291692	3292692	+	696.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019574, intron 1 of 3)	intron (NM_019574, intron 1 of 3)	1735.0	NM_019574	56218.0	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7210513-2	chr10	7210016	7211016	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172546, intron 1 of 12)	intron (NM_172546, intron 1 of 12)	1721.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	2.5	0.0	4.0	1.0	0.0	2.5
Merged-chr2-69060270-2	chr2	69059770	69060770	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 6 of 10)	intron (NM_001347161, intron 6 of 10)	-75530.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106343475-3	chr9	106342863	106343863	+	696.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 10 of 10)	intron (NM_027354, intron 10 of 10)	-25269.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	0.0	3.5	1.0	10.0	17.5	4.5
Merged-chr8-47743598-2	chr8	47743098	47744098	+	696.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29667.0	NM_172407	70925.0	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100479768-2	chr7	100479268	100480268	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009464, intron 2 of 6)	intron (NM_009464, intron 2 of 6)	6777.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-3743122-2	chr16	3742610	3743610	+	696.5	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_148924)	promoter-TSS (NM_148924)	-989.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23532368-2	chr13	23531868	23532868	+	696.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153173)	TTS (NM_153173)	1324.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3782614-2	chr4	3782116	3783116	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 11 of 12)	intron (NM_001111096, intron 11 of 12)	53039.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	11.0	3.5	8.5	12.5	1.0	5.5
Merged-chr9-61023558-2	chr9	61023058	61024058	+	696.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	6489.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25770065-2	chr14	25769565	25770565	+	696.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1209.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17209752-2	chr16	17209252	17210252	+	696.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033338, exon 1 of 1)	exon (NM_001033338, exon 1 of 1)	1617.0	NM_001033338	239731.0	Mm.86671	NM_001033338	ENSMUSG00000071636	Rimbp3	Gm1759|Gm603|RIM-BP3|mKIAA1666	RIMS binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102966035-2	chr15	102965535	102966535	+	696.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010462)	promoter-TSS (NM_010462)	-761.0	NM_010462	209448.0	Mm.31665	NM_010462	ENSMUSG00000022484	Hoxc10	AI506621|Hox-3.6	homeobox C10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126555363-2	chr8	126554863	126555863	+	696.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38073.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.0	2.5	2.0	0.5	0.0	1.0
Merged-chr6-142580559-2	chr6	142580059	142581059	+	696.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-8945.0	NM_001330366	16523.0	Mm.1482	NM_008428	ENSMUSG00000030247	Kcnj8	AI448900|Kir6.1|gnite|slmbr|sltr|uKATP-1	potassium inwardly-rectifying channel, subfamily J, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83120996-2	chr6	83120496	83121496	+	696.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023547)	TTS (NM_023547)	465.0	NM_001083923	22377.0	Mm.1109	NM_016757	ENSMUSG00000030035	Wbp1	AI255152	WW domain binding protein 1	protein-coding	2.0	15.5	5.5	0.5	6.5	4.0
Merged-chr4-131907717-2	chr4	131907217	131908217	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_102393, intron 4 of 4)	intron (NR_102393, intron 4 of 4)	12312.0	NR_102394	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-78819499-2	chr8	78818999	78819999	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030145, intron 1 of 3)	MER2|DNA|TcMar-Tigger	1653.0	NM_001191004	78651.0	Mm.28694	NM_030145	ENSMUSG00000031683	Lsm6	1500031N17Rik|2410088K19Rik|AI747288	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90051009-2	chr3	90050509	90051509	+	696.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287087)	promoter-TSS (NM_001287087)	-627.0	NM_001287087	99650.0	Mm.300083	NM_025762	ENSMUSG00000027942	4933434E20Rik	5730552F22Rik|AI462154|NICE-3|NS5ATP4	RIKEN cDNA 4933434E20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5094016-2	chr18	5093516	5094516	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347449, intron 16 of 30)	intron (NM_001347449, intron 16 of 30)	47427.0	NM_001347449	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120589253-2	chr4	120588757	120589757	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101603, intron 1 of 2)	intron (NM_001101603, intron 1 of 2)	512.0	NM_001101603	667063.0	Mm.90231	NM_001101603	ENSMUSG00000091297	Gm8439	EG667063|Gm1664	predicted gene 8439	protein-coding	0.5	0.0	4.5	0.0	0.0	0.0
Merged-chr10-51590897-2	chr10	51590397	51591397	+	696.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029894)	promoter-TSS (NM_029894)	-437.0	NM_029894	77296.0	Mm.30588	NM_029894	ENSMUSG00000019909	Fam162b	9430073N08Rik	family with sequence similarity 162, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44507254-4	chr13	44506746	44507746	+	696.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67519.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	5.0	4.0	0.5	0.0	1.5	0.0
Merged-chr2-102828664-2	chr2	102828101	102829101	+	696.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001177785, exon 13 of 16)	exon (NM_001177785, exon 13 of 16)	73064.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	2.5	8.5	9.0	2.5	8.5	9.0
Merged-chr2-166827692-2	chr2	166827192	166828192	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085495, intron 3 of 38)	intron (NM_001085495, intron 3 of 38)	22111.0	NM_001085495	99371.0	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41499706-2	chr4	41499206	41500206	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085515, intron 1 of 1)	intron (NM_001085515, intron 1 of 1)	3369.0	NM_001085515	329828.0	Mm.27054	NM_001085515	ENSMUSG00000046312	AI464131	AA408153|AI604836|Gm762|Kiaa1161|Myorg|NET37	expressed sequence AI464131	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152750664-2	chr2	152750164	152751164	+	696.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3509.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102278167-2	chr15	102277667	102278667	+	696.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-1289.0	NM_134100	106073.0	Mm.287740	NM_134100	ENSMUSG00000045665	Mfsd5	AA409375|AW556797|D15Mgi27	major facilitator superfamily domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63979619-2	chr9	63979119	63980119	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	42440.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-25715180-1	chr4	25714680	25715680	+	696.5	f0_balb.idr	intron (NM_010243, intron 1 of 2)	MTD|LTR|ERVL-MaLR	84823.0	NM_010243	14348.0	Mm.39101	NM_010243	ENSMUSG00000055373	Fut9	AI746471|AU067636|mFUT9|mFuc-TIX	fucosyltransferase 9	protein-coding	0.0	3.5	2.0	0.0	3.5	2.0
Merged-chr18-56439956-1	chr18	56439456	56440456	+	696.5	f0_balb.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	7824.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74530717-2	chr17	74530217	74531217	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007566, intron 1 of 72)	B3A|SINE|B2	2422.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-70202777-2	chr10	70202277	70203277	+	696.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1887.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-63997260-1	chr7	63996760	63997760	+	696.5	f0_balb.idr	Intergenic	Intergenic	-58345.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78184291-2	chr11	78183791	78184791	+	696.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207523)	promoter-TSS (NM_207523)	-707.0	NM_207523	268449.0	Mm.22723	NM_207523	ENSMUSG00000058546	Rpl23a	BC029892|MDA20	ribosomal protein L23A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151724583-2	chr1	151724083	151725083	+	696.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	30144.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55384174-2	chr12	55383674	55384674	+	696.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310583)	promoter-TSS (NM_001310583)	-48.0	NM_001310583	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36796497-2	chr15	36795997	36796997	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253806, intron 1 of 5)	RMER1B|Other|Other	432.0	NM_001253806	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57433954-4	chr9	57433456	57434456	+	696.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152145, intron 3 of 6)	intron (NR_152145, intron 3 of 6)	5780.0	NM_001357913	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167984316-2	chr2	167983816	167984816	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080708, intron 17 of 21)	intron (NM_001080708, intron 17 of 21)	26277.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116309671-3	chr7	116309144	116310144	+	696.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1268.0	NM_001305185	233765.0	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160727798-2	chr2	160727298	160728298	+	696.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3512.0	NM_021280	18803.0	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	0.0	0.5	0.0	0.0	0.0	2.5
Merged-chr18-9712319-3	chr18	9711833	9712833	+	696.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 1 of 9)	intron (NM_130449, intron 1 of 9)	4685.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99523020-2	chr5	99522520	99523520	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	206040.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr13-55004907-2	chr13	55004407	55005407	+	696.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001311128, exon 15 of 15)	exon (NM_001311128, exon 15 of 15)	15912.0	NM_001206390	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	0.0	0.0	0.0	0.0	8.0	4.5
Merged-chr11-11555787-2	chr11	11555287	11556287	+	696.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66521.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	11.0	4.0	4.0	15.0	8.0	3.5
Merged-chr7-4133417-2	chr7	4132917	4133917	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109765, intron 12 of 13)	intron (NM_001109765, intron 12 of 13)	3509.0	NR_033548	100037396.0	Mm.447887	NR_033548	ENSMUSG00000085886	D030047H15Rik	Gm15924	RIKEN cDNA D030047H15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155706353-2	chr4	155705853	155706853	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026899, intron 1 of 4)	B1_Mus1|SINE|Alu	1538.0	NM_026899	68991.0	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	15.0	24.5	8.0	3.5	12.0	13.5
Merged-chr7-28973228-2	chr7	28972728	28973728	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028659, intron 6 of 7)	B2_Mm2|SINE|B2	8660.0	NM_001285943	73830.0	Mm.29714	NM_028659	ENSMUSG00000053565	Eif3k	1200009C21Rik|Eif3s12	eukaryotic translation initiation factor 3, subunit K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91486486-2	chr16	91485986	91486986	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010508, intron 1 of 10)	B3|SINE|B2	1271.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93292023-1	chr10	93291523	93292523	+	696.5	f0_balb.idr	intron (NM_001322265, intron 1 of 4)	intron (NM_001322265, intron 1 of 4)	19136.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	0.0	0.0	1.5	0.0	3.0	1.0
Merged-chr12-86837782-2	chr12	86837282	86838282	+	696.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	47032.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-18139101-1	chr10	18138601	18139601	+	696.5	f0_c57.idr	intron (NM_001195036, intron 17 of 20)	intron (NM_001195036, intron 17 of 20)	71789.0	NM_001195036	100045792.0	Mm.380617	NM_001195036	ENSMUSG00000071392	Ect2l	C330021H03Rik|Gm10331	epithelial cell transforming sequence 2 oncogene-like	protein-coding	1.5	0.0	0.0	1.5	0.0	0.0
Merged-chr7-45549629-2	chr7	45549129	45550129	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_148927, intron 16 of 19)	intron (NM_148927, intron 16 of 19)	-5299.0	NM_025330	66065.0	Mm.285710	NM_025330	ENSMUSG00000030825	Hsd17b14	0610039E24Rik|Dhrs10|retSDR3	hydroxysteroid (17-beta) dehydrogenase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36231324-3	chr15	36230826	36231826	+	696.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012031, intron 16 of 18)	intron (NM_012031, intron 16 of 18)	8838.0	NR_106173	102465888.0		NR_106173	ENSMUSG00000098457	Mir8097	Gm27497|mmu-mir-8097	microRNA 8097	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109864579-2	chr8	109864079	109865079	+	696.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009677)	TTS (NM_009677)	-4024.0	NM_001122594	244650.0	Mm.23494	NM_001122594	ENSMUSG00000031732	Phlpp2	AI481772|C130044A18Rik|Phlppl	PH domain and leucine rich repeat protein phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-18622081-3	chr19	18621608	18622608	+	696.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 1 of 9)	Lx3A|LINE|L1	9705.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-83738767-2	chr13	83738267	83739267	+	696.416626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029545)	promoter-TSS (NR_029545)	-47.0	NR_029545	723967.0		NR_029545	ENSMUSG00000065424	Mir9-2	Mirn9-2|mir-9-2|mmu-mir-9-2	microRNA 9-2	ncRNA	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr2-5710137-3	chr2	5709626	5710626	+	696.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	4636.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	19.5	12.0	13.5	6.5	7.0	4.5
Merged-chr15-53415557-4	chr15	53415069	53416069	+	696.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69386.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-3006329-3	chr18	3005828	3006828	+	696.344421	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117084.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130791109-2	chr4	130790609	130791609	+	696.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-1428.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19498898-2	chr7	19498398	19499398	+	696.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9433.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-30843222-3	chr3	30842716	30843716	+	696.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-12734.0	NM_001134386	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94381394-3	chr8	94380893	94381893	+	696.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-5036.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-92930333-1	chr13	92929833	92930833	+	696.333313	f0_c57.idr	Intergenic	Intergenic	85546.0	NM_001162945	382793.0	Mm.296770	NM_001162945	ENSMUSG00000021704	Mtx3	4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514	metaxin 3	protein-coding	1.5	2.5	10.0	1.0	1.5	0.0
Merged-chr4-138091979-3	chr4	138091480	138092480	+	696.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172703, intron 5 of 34)	intron (NM_172703, intron 5 of 34)	46538.0	NR_126429	73563.0	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	4.5	20.0	16.0	8.5	6.0	9.0
Merged-chr2-32385147-3	chr2	32384599	32385599	+	696.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008491, intron 5 of 5)	intron (NM_008491, intron 5 of 5)	2640.0	NM_008491	16819.0	Mm.9537	NM_008491	ENSMUSG00000026822	Lcn2	24p3|AW212229|NRL|Sip24	lipocalin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79945874-2	chr8	79945374	79946374	+	696.3000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112134.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96235113-2	chr11	96234613	96235613	+	696.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16547.0	NR_037977	193022.0	Mm.169508	NR_037977		Gm53	-	predicted gene 53	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69976362-1	chr3	69975862	69976862	+	696.25	f0_c57.idr	Intergenic	L1MEc|LINE|L1	-31251.0	NM_001018031	229389.0	Mm.331071	NM_001018031	ENSMUSG00000027788	Otol1	Gm414	otolin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22974406-2	chr11	22973906	22974906	+	696.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_011663, exon 1 of 1)	exon (NM_011663, exon 1 of 1)	-1540.0	NM_001361661	17846.0	Mm.259903	NM_144514	ENSMUSG00000051355	Commd1	AI256843|Murr1|U2/Mu	COMM domain containing 1	protein-coding	0.0	0.0	3.0	0.0	1.0	0.0
Merged-chr7-102252332-2	chr7	102251811	102252811	+	696.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-2193.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	8.5	0.5	2.0	8.5	0.5	2.0
Merged-chr13-13889103-2	chr13	13888590	13889590	+	696.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_T|LINE|L1	-65584.0	NM_001362404	97884.0	Mm.21686	NM_178640	ENSMUSG00000039242	B3galnt2	A930105D20Rik|C80633|D230016N13Rik	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65674712-2	chr18	65674209	65675209	+	696.25	f0_balb.idr|f1_balb.idr	intron (NM_001361052, intron 6 of 8)	intron (NM_001361052, intron 6 of 8)	-23559.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	18.0	13.5	6.0	0.5	6.0	15.0
Merged-chr4-141368330-4	chr4	141367873	141368873	+	696.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085513, intron 1 of 6)	CpG	181.0	NM_001085513	277743.0	Mm.294614	NM_001085513	ENSMUSG00000006218	Fam131c	Gm693	family with sequence similarity 131, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55139300-2	chr14	55138800	55139800	+	696.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22365.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55121569-3	chr11	55121028	55122028	+	696.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	23543.0	NM_010299	14667.0	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118975583-2	chr11	118975083	118976083	+	696.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12598.0	NM_001359574	238011.0	Mm.244114	NM_001030291	ENSMUSG00000046697	Enpp7	Alk-SMase|Gm254	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184610477-3	chr1	184609975	184610975	+	696.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52784.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0.0	0.5	0.5	0.0	1.5	2.0
Merged-chr17-83846474-3	chr17	83845986	83846986	+	696.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025325, intron 1 of 9)	intron (NM_025325, intron 1 of 9)	304.0	NM_025325	107766.0	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-22358187-3	chr10	22357684	22358684	+	696.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-3710.0	NM_020030	56554.0	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-50943362-4	chr2	50942863	50943863	+	696.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33679.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108599821-3	chr8	108599291	108600291	+	696.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15114.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-76689508-3	chr13	76689018	76690018	+	696.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030174, intron 3 of 20)	intron (NM_030174, intron 3 of 20)	304557.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	24.0	4.5	15.5	8.0	2.0	7.5
Merged-chr1-30920808-3	chr1	30920272	30921272	+	696.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28938.0	NR_002688	433406.0	Mm.389003	NR_002688		Gm13363	-	predicted gene 13363	pseudo	0.0	0.0	0.5	1.5	2.5	0.0
Merged-chr6-116663574-2	chr6	116663074	116664074	+	696.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_178045, intron 1 of 10)	Tigger7|DNA|TcMar-Tigger	10262.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-53461171-2	chr3	53460671	53461671	+	696.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172501, intron 3 of 6)	B4|SINE|B4	2087.0	NM_172501	212114.0	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39068865-4	chr6	39068402	39069402	+	696.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 9 of 12)	intron (NM_011539, intron 9 of 12)	-1316.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38602857-3	chr18	38602426	38603426	+	696.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1658.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	0.0	1.0	0.0	0.0	0.0	1.0
Merged-chr1-136608572-3	chr1	136608074	136609074	+	696.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-16327.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-85037828-3	chr6	85037313	85038313	+	696.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 1 of 21)	intron (NM_177077, intron 1 of 21)	31700.0	NM_177077	75914.0	Mm.159621	NM_177077	ENSMUSG00000033769	Exoc6b	4930569O18Rik|G430127E12Rik|Sec15b|Sec15l2|mKIAA0919	exocyst complex component 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54218984-4	chr13	54218498	54219498	+	696.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153432, intron 2 of 3)	intron (NR_153432, intron 2 of 3)	26865.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	0.5	17.0	1.0	0.0	1.5	7.0
Merged-chr8-70625232-4	chr8	70624715	70625715	+	696.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVK26-int|LTR|ERVK	6880.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	7.5	34.0	15.5	2.0	58.5	33.0
Merged-chr18-34438943-2	chr18	34438443	34439443	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016927, intron 14 of 14)	intron (NM_016927, intron 14 of 14)	29520.0	NM_016927	53871.0	Mm.445792	NM_016927	ENSMUSG00000014503	Pkd2l2	TRPP5	polycystic kidney disease 2-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66823316-2	chr14	66822816	66823816	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009955, intron 8 of 13)	intron (NM_009955, intron 8 of 13)	45284.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83093795-1	chr8	83093295	83094295	+	696.0	f1_balb.idr	Intergenic	(TTGG)n|Simple_repeat|Simple_repeat	-71557.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	0.0	13.5	0.0	4.0	0.0	6.5
Merged-chr9-83573274-1	chr9	83572774	83573774	+	696.0	f1_balb.idr	intron (NM_172507, intron 1 of 3)	B1F|SINE|Alu	24936.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	3.5	2.0	1.0	3.0	3.0	2.5
Merged-chr2-165901673-2	chr2	165901173	165902173	+	696.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-16835.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	21.0	25.5	27.5	5.5	8.0	17.5
Merged-chr7-81214865-2	chr7	81214365	81215365	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 1 of 21)	intron (NM_008803, intron 1 of 21)	1061.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117512017-1	chr5	117511517	117512517	+	696.0	f1_c57bl6.idr	intron (NM_001312914, intron 3 of 19)	intron (NM_001312914, intron 3 of 19)	98015.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0.0	2.0	0.0	0.0	0.0	0.5
Merged-chr3-79627724-1	chr3	79627224	79628224	+	696.0	f0_balb.idr	intron (NM_025794, intron 1 of 12)	intron (NM_025794, intron 1 of 12)	1043.0	NM_025794	66841.0	Mm.28336	NM_025794	ENSMUSG00000027809	Etfdh	0610010I20Rik|AV001013	electron transferring flavoprotein, dehydrogenase	protein-coding	2.0	0.0	0.5	2.0	0.0	0.5
Merged-chr11-120698169-2	chr11	120697669	120698669	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026877, intron 7 of 15)	intron (NM_026877, intron 7 of 15)	15598.0	NM_016665	20892.0	Mm.259716	NM_016665	ENSMUSG00000025144	Cenpx	Stra13	centromere protein X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180067650-2	chr2	180067150	180068150	+	696.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178750, exon 11 of 11)	3' UTR (NM_178750, exon 11 of 11)	-2943.0	NM_001083328	52856.0	Mm.219658	NM_028422	ENSMUSG00000039069	Mtg2	1810011P19Rik|2900056P18Rik|D2Bwg0647e|Gtpbp5	mitochondrial ribosome associated GTPase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34472550-2	chr19	34472050	34473050	+	696.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2585.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114069873-2	chr7	114069373	114070373	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	47908.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-108240127-2	chr11	108239627	108240627	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	103761.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	2.0	2.0	0.0	0.0	0.0	0.0
Merged-chr7-142392676-1	chr7	142392176	142393176	+	696.0	f1_balb.idr	Intergenic	Intergenic	-4806.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	92.0	155.0	122.5	54.5	70.5	61.5
Merged-chr17-35045779-2	chr17	35045279	35046279	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013600, intron 2 of 23)	intron (NM_013600, intron 2 of 23)	843.0	NM_013600	17687.0	Mm.24192	NM_013600	ENSMUSG00000007035	Msh5	Mut5	mutS homolog 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-72669291-1	chr7	72668791	72669791	+	696.0	f0_balb.idr	Intergenic	Intergenic	-362696.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91397146-2	chr16	91396646	91397646	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 7 of 7)	intron (NM_001347258, intron 7 of 7)	-9089.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-39006771-1	chr8	39006271	39007271	+	696.0	f0_balb.idr	intron (NM_001357305, intron 1 of 8)	intron (NM_001357305, intron 1 of 8)	926.0	NM_001357306	80286.0	Mm.272722	NM_030254	ENSMUSG00000039530	Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding	10.5	25.0	17.5	7.5	57.5	28.0
Merged-chr5-105704818-2	chr5	105704271	105705271	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	3961.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.0	2.0	4.0	7.5	4.5	0.0
Merged-chr14-121341342-2	chr14	121340882	121341882	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145465, intron 1 of 10)	intron (NM_145465, intron 1 of 10)	37848.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0.0	4.5	0.5	4.0	0.0	1.0
Merged-chr12-118849078-3	chr12	118848604	118849604	+	696.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177082, exon 3 of 3)	exon (NM_177082, exon 3 of 3)	2775.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24763118-2	chr13	24762618	24763618	+	696.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1181.0	NM_020567	57441.0	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5605987-1	chr2	5605487	5606487	+	696.0	f0_balb.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	70059.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	2.0	0.5	2.0	7.0	6.5	6.0
Merged-chr5-64934854-2	chr5	64934354	64935354	+	696.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-1296.0	NM_001276445	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34656586-2	chr13	34656086	34657086	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_105041, intron 2 of 3)	intron (NR_105041, intron 2 of 3)	3663.0	NR_105041	101056149.0	Mm.421309	NR_105041	ENSMUSG00000086786	Gm15908	-	predicted gene 15908	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111654243-2	chr8	111653731	111654731	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358993, intron 1 of 3)	intron (NM_001358993, intron 1 of 3)	10788.0	NM_011742	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	3.5	6.5	1.0	3.5	6.5	1.0
Merged-chr16-10784206-2	chr16	10783706	10784706	+	696.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001271603, exon 2 of 2)	3' UTR (NM_001271603, exon 2 of 2)	1330.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-68171308-1	chr16	68170808	68171808	+	696.0	f1_balb.idr	Intergenic	MLTR25A|LTR|ERVK	-550400.0	NM_178721	239857.0	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0.0	2.5	2.0	4.5	4.0	0.0
Merged-chr14-101600607-2	chr14	101600107	101601107	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	8584.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-138153216-1	chr6	138152716	138153716	+	696.0	f0_balb.idr	intron (NR_154598, intron 2 of 2)	intron (NR_154598, intron 2 of 2)	11629.0	NM_001361309	56615.0	Mm.14796	NM_019946	ENSMUSG00000008540	Mgst1	1500002K10Rik|Gst	microsomal glutathione S-transferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122370257-1	chr2	122369757	122370757	+	696.0	f1_balb.idr	Intergenic	Intergenic	-1339.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	6.5	0.5	2.0	1.0	0.5	0.0
Merged-chr8-4231700-2	chr8	4231200	4232200	+	696.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028175, exon 2 of 3)	exon (NM_028175, exon 2 of 3)	4873.0	NM_028175	72267.0	Mm.25479	NM_028175	ENSMUSG00000046589	Lrrc8e	1810049O03Rik|C87354	leucine rich repeat containing 8 family, member E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-26868901-2	chr18	26868401	26869401	+	696.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1114744.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-14203973-1	chr9	14203473	14204473	+	696.0	f0_balb.idr	Intergenic	Intergenic	-72328.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81111034-2	chr10	81110534	81111534	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023138, intron 2 of 10)	intron (NM_023138, intron 2 of 10)	5119.0	NM_001358539	26396.0	Mm.275436	NM_023138	ENSMUSG00000035027	Map2k2	AA589381|MEK2|MK2|Prkmk2	mitogen-activated protein kinase kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143521372-1	chr5	143520872	143521872	+	696.0	f1_balb.idr	intron (NM_001347530, intron 1 of 6)	intron (NM_001347530, intron 1 of 6)	6621.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-85454577-2	chr17	85454077	85455077	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028576, intron 10 of 10)	intron (NM_028576, intron 10 of 10)	163819.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120377648-2	chr11	120377148	120378148	+	696.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027980, exon 3 of 10)	exon (NM_027980, exon 3 of 10)	1098.0	NM_027980	71885.0	Mm.274890	NM_027980	ENSMUSG00000025384	Faap100	2310003H01Rik	Fanconi anemia core complex associated protein 100	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120843557-1	chr7	120843057	120844057	+	696.0	f0_balb.idr	promoter-TSS (NM_001267710)	promoter-TSS (NM_001267710)	-43.0	NM_001267710	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-93089527-2	chr15	93089027	93090027	+	696.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	185652.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-84072076-2	chr6	84071576	84072576	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 12 of 54)	intron (NM_001077694, intron 12 of 54)	52690.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34856560-2	chr1	34856060	34857060	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357425, intron 2 of 8)	RLTR28|LTR|ERVL	6571.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142381281-1	chr7	142380781	142381781	+	696.0	f1_balb.idr	intron (NM_009983, intron 4 of 8)	intron (NM_009983, intron 4 of 8)	6589.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	3.5	8.0	8.5	0.0	0.0	1.0
Merged-chr12-110695047-2	chr12	110694547	110695547	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010480, intron 3 of 10)	intron (NM_010480, intron 3 of 10)	1348.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-31997977-2	chr12	31997480	31998480	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011158, intron 2 of 10)	intron (NM_011158, intron 2 of 10)	-47735.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	1.0	1.5	0.0	1.0	0.0	0.0
Merged-chr2-32646556-1	chr2	32646056	32647056	+	696.0	f0_balb.idr	promoter-TSS (NM_007932)	promoter-TSS (NM_007932)	-39.0	NM_007932	13805.0	Mm.225297	NM_007932	ENSMUSG00000026814	Eng	AI528660|AI662476|CD105|Endo|S-endoglin	endoglin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70129293-1	chr12	70128793	70129793	+	696.0	f0_balb.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-17258.0	NR_104397	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	0.0	0.0	0.0	2.0	0.0	0.0
Merged-chr2-158361213-1	chr2	158360713	158361713	+	696.0	f0_balb.idr	intron (NR_015463, intron 1 of 5)	intron (NR_015463, intron 1 of 5)	296.0	NR_015463	68108.0	Mm.119198	NR_015463		Snhg17	9430008C03Rik	small nucleolar RNA host gene 17	ncRNA	0.5	3.0	0.0	8.0	5.5	4.0
Merged-chr16-15954553-3	chr16	15954057	15955057	+	696.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 9 of 18)	intron (NM_001355731, intron 9 of 18)	67271.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86575022-1	chr4	86574522	86575522	+	696.0	f0_balb.idr	promoter-TSS (NM_178376)	promoter-TSS (NM_178376)	-651.0	NM_178376	68441.0	Mm.31178	NM_178376	ENSMUSG00000070934	Rraga	1300010C19Rik|AI255374|FIP-1|RAGA	Ras-related GTP binding A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172078158-1	chr1	172077658	172078658	+	696.0	f0_balb.idr	intron (NM_021607, intron 2 of 16)	intron (NM_021607, intron 2 of 16)	-4371.0	NM_009938	12847.0	Mm.30041	NM_009938	ENSMUSG00000026553	Copa	AU040324|xenin	coatomer protein complex subunit alpha	protein-coding	3.0	10.5	10.5	11.5	12.0	7.0
Merged-chr1-13185008-2	chr1	13184508	13185508	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 6 of 22)	intron (NM_008678, intron 6 of 22)	-57845.0	NM_001081209	383491.0	Mm.309380	NM_001081209	ENSMUSG00000042414	Prdm14	-	PR domain containing 14	protein-coding	3.5	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4232510-2	chr12	4232010	4233010	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134046, intron 2 of 6)	intron (NM_134046, intron 2 of 6)	1455.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9871103-2	chr13	9870603	9871603	+	696.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105782.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-112278281-2	chr10	112277781	112278781	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359753, intron 2 of 4)	intron (NM_001359753, intron 2 of 4)	7008.0	NM_001359753	268345.0	Mm.336242	NM_001025581	ENSMUSG00000035681	Kcnc2	AW047325|B230117I07|KShIIIA|Kv3.2	potassium voltage gated channel, Shaw-related subfamily, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-31787593-1	chr11	31787093	31788093	+	696.0	f0_balb.idr	Intergenic	Intergenic	36954.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	0.0	0.0	10.5	0.0	2.0	0.5
Merged-chr2-104589798-2	chr2	104589299	104590299	+	696.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177253)	promoter-TSS (NM_177253)	-685.0	NM_177253	228410.0	Mm.259876	NM_145529	ENSMUSG00000027176	Cstf3	4732468G05Rik|C79532|CstF-77	cleavage stimulation factor, 3' pre-RNA, subunit 3	protein-coding	1.5	6.0	3.5	9.0	8.0	3.0
Merged-chr3-7500947-1	chr3	7500447	7501447	+	696.0	f1_balb.idr	Intergenic	RMER1B|Other|Other	-2479.0	NM_173181	67306.0	Mm.332366	NM_173181	ENSMUSG00000043542	Zc2hc1a	3110050N22Rik|AI790358|AU023959|Fam164a	zinc finger, C2HC-type containing 1A	protein-coding	0.0	0.0	3.5	0.0	1.0	0.0
Merged-chr6-120111730-2	chr6	120111230	120112230	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	18350.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43035312-2	chr17	43034810	43035810	+	696.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 1 of 5)	PB1D10|SINE|Alu	18755.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	31.0	44.5	24.5	20.5	43.0	32.5
Merged-chr2-174442655-2	chr2	174442155	174443155	+	696.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3616.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-23432100-2	chr5	23431600	23432600	+	696.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040469, exon 1 of 1)	non-coding (NR_040469, exon 1 of 1)	2253.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	42.5	97.0	83.5	38.0	94.0	53.0
Merged-chr17-47871119-2	chr17	47870619	47871619	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028767, intron 14 of 16)	intron (NM_028767, intron 14 of 16)	-36428.0	NM_001109973	17240.0	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	0.0	0.0	0.0	1.5	3.0	0.0
Merged-chr17-83272263-2	chr17	83271763	83272763	+	696.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	56980.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	1.0	2.0	0.5	1.0	0.0	0.5
Merged-chr15-101308999-3	chr15	101308497	101309497	+	696.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15785.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	0.5	6.5	0.0	0.5	6.5	0.0
Merged-chr15-35300775-2	chr15	35300275	35301275	+	696.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_054049, exon 2 of 4)	exon (NM_054049, exon 2 of 4)	4663.0	NM_054049	107587.0	Mm.46336	NM_054049	ENSMUSG00000022330	Osr2	5430409I15Rik|Osr2A|Osr2B	odd-skipped related 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-22755812-2	chr1	22755312	22756312	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001012625, intron 1 of 26)	intron (NM_001012625, intron 1 of 26)	50191.0	NM_001012623	116837.0	Mm.60061	NM_053270	ENSMUSG00000041670	Rims1	C030033M19Rik|RIM1|RIM1a|RIM1alpha|Rab3ip1|Rim|Serg1	regulating synaptic membrane exocytosis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-77438167-2	chr8	77437667	77438667	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 3 of 22)	intron (NM_030113, intron 3 of 22)	-78889.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94393805-2	chr10	94393305	94394305	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	81856.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-57374665-2	chr1	57374165	57375165	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_037999, intron 2 of 3)	intron (NR_037999, intron 2 of 3)	2879.0	NR_037999	75323.0	Mm.362968	NR_037999	ENSMUSG00000097519	4930558J18Rik	-	RIKEN cDNA 4930558J18 gene	ncRNA	0.0	1.5	0.5	1.0	0.0	1.0
Merged-chr14-61677487-2	chr14	61676987	61677987	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	MERVL_2A-int|LTR|ERVL	4886.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69505329-3	chr3	69504837	69505837	+	695.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178726, intron 2 of 3)	intron (NM_178726, intron 2 of 3)	93623.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-57571948-3	chr19	57571453	57572453	+	695.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-39081.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	2.0	0.0	1.0	0.0	3.5	1.0
Merged-chr1-131181803-4	chr1	131181324	131182324	+	695.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018750, intron 3 of 5)	intron (NM_018750, intron 3 of 5)	18361.0	NM_001311094	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	1.5	0.0	0.5	0.0	0.0	7.0
Merged-chr11-48924016-3	chr11	48923506	48924506	+	695.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045540, intron 1 of 2)	intron (NM_001045540, intron 1 of 2)	3176.0	NM_001045540	620913.0	Mm.452174	NM_001045540	ENSMUSG00000048852	Gm12185	Irgb2b1	predicted gene 12185	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-133186477-3	chr7	133185986	133186986	+	695.883362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	58235.0	NR_046279	74970.0	Mm.491044	NR_046279	ENSMUSG00000109816	4930483O08Rik	-	RIKEN cDNA 4930483O08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70017776-2	chr11	70017276	70018276	+	695.875	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001109752)	promoter-TSS (NM_001109752)	-829.0	NM_001109752	13385.0	Mm.27256	NM_007864	ENSMUSG00000020886	Dlg4	Dlgh4|PSD-95|PSD95|SAP90|SAP90A	discs large MAGUK scaffold protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53229579-2	chr4	53229079	53230079	+	695.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-16617.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153146388-2	chr2	153145888	153146888	+	695.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 11 of 12)	intron (NM_001172117, intron 11 of 12)	-14913.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164961225-2	chr2	164960772	164961772	+	695.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355481, intron 1 of 24)	intron (NM_001355481, intron 1 of 24)	426.0	NM_001355480	57138.0	Mm.252987	NM_020333	ENSMUSG00000017740	Slc12a5	KCC2|mKIAA1176	solute carrier family 12, member 5	protein-coding	0.0	0.0	0.0	0.0	2.0	0.5
Merged-chr19-16139386-2	chr19	16138886	16139886	+	695.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	6555.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	41.5	55.5	59.0	41.0	82.0	64.0
Merged-chr1-14594314-2	chr1	14593814	14594814	+	695.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	161652.0	NM_001360810	17681.0	Mm.5820	NM_010827	ENSMUSG00000025930	Msc	MyoR|bHLHa22	musculin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-22183418-3	chr14	22182908	22183908	+	695.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 2 of 6)	ORR1E|LTR|ERVL-MaLR	163696.0	NM_028275	76633.0	Mm.489898	NM_028275	ENSMUSG00000063458	Lrmda	1700112E06Rik|2700009F18Rik	leucine rich melanocyte differentiation associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115315974-3	chr6	115315485	115316485	+	695.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-44966.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130274529-2	chr5	130274029	130275029	+	695.833313	f1_balb.idr|f1_c57bl6.idr	intron (NR_153350, intron 6 of 15)	ID4_|SINE|ID	17492.0	NM_001015876	100929.0	Mm.271296	NM_178897	ENSMUSG00000056310	Tyw1	AW125391|Rsafd1	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding	0.5	0.0	0.0	0.5	0.0	0.0
Merged-chr15-9129249-3	chr15	9128750	9129750	+	695.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 2 of 9)	intron (NM_013787, intron 2 of 9)	11204.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50304101-2	chr6	50303601	50304601	+	695.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_027881, intron 18 of 21)	intron (NM_027881, intron 18 of 21)	-42332.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25585791-3	chr9	25585276	25586276	+	695.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 4 of 7)	intron (NM_026189, intron 4 of 7)	104179.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58217761-2	chr11	58217224	58218224	+	695.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_019440, intron 1 of 1)	intron (NM_019440, intron 1 of 1)	2747.0	NM_019440	54396.0	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	27.0	12.5	22.0	15.0	23.0	18.0
Merged-chr9-42123707-3	chr9	42123197	42124197	+	695.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011436, intron 1 of 47)	intron (NM_011436, intron 1 of 47)	600.0	NM_011436	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0.0	1.0	1.5	0.0	0.0	0.0
Merged-chr1-177179850-3	chr1	177179357	177180357	+	695.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011785, intron 1 of 12)	intron (NM_011785, intron 1 of 12)	68910.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55963525-3	chr4	55963006	55964006	+	695.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-431031.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-16830054-1	chr12	16829554	16830554	+	695.75	f0_balb.idr	Intergenic	Intergenic	19089.0	NM_033270	50496.0	Mm.23296	NM_033270	ENSMUSG00000057469	E2f6	AI462434|E2F6a|E2F6b|EMA	E2F transcription factor 6	protein-coding	0.0	0.0	4.0	0.5	9.5	4.0
Merged-chr17-29385304-2	chr17	29384752	29385752	+	695.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24338.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	2.0	0.0	3.0	9.5	0.0	5.0
Merged-chr13-12883335-2	chr13	12882835	12883835	+	695.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83256.0	NM_011118	18812.0	Mm.457984	NM_011118	ENSMUSG00000056457	Prl2c3	Ghd1|MRP-2|MRP-3|Mrpplf3|PLF-2|PLF-3|Plf2|Prl2c4|mrp/plf3	prolactin family 2, subfamily c, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39406895-2	chr18	39406355	39407355	+	695.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	80390.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	5.0	0.5	0.0	0.0	0.5
Merged-chr13-108057068-2	chr13	108056599	108057599	+	695.75	f0_balb.idr|f1_balb.idr	intron (NM_001127346, intron 3 of 3)	ORR1E|LTR|ERVL-MaLR	12625.0	NM_001048250	75616.0	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	0.0	2.5	2.0	0.0	2.5	2.5
Merged-chr7-137412274-2	chr7	137411774	137412774	+	695.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1518.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64111537-3	chr15	64111041	64112041	+	695.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010026, intron 25 of 30)	Lx8b|LINE|L1	-51093.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	8.0	3.0	5.0	8.0	3.0	5.0
Merged-chr7-118114067-3	chr7	118113682	118114682	+	695.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170669, intron 3 of 4)	intron (NM_170669, intron 3 of 4)	1965.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	7.0	38.5	13.5	31.5	36.0	13.0
Merged-chr5-21138845-5	chr5	21138331	21139331	+	695.719971	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37448.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93956876-4	chr2	93956367	93957367	+	695.700928	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001145034, exon 1 of 1)	5' UTR (NM_001145034, exon 1 of 1)	233.0	NM_001145034	620695.0	Mm.482106	NM_001145034	ENSMUSG00000087006	Gm13889	Ag2	predicted gene 13889	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-126427835-3	chr2	126427337	126428337	+	695.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 7 of 27)	intron (NM_001359975, intron 7 of 27)	63716.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8936791-3	chr17	8936298	8937298	+	695.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347321, intron 5 of 21)	intron (NM_001347321, intron 5 of 21)	-51535.0	NM_025851	66931.0	Mm.67591	NM_025851	ENSMUSG00000023873	1700010I14Rik	-	RIKEN cDNA 1700010I14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121260212-1	chr5	121259712	121260712	+	695.666687	f0_balb.idr	intron (NM_181421, intron 4 of 75)	intron (NM_181421, intron 4 of 75)	39993.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	0.5	2.5	5.0	0.0	1.0	9.0
Merged-chr19-10896022-3	chr19	10895500	10896500	+	695.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134129, intron 1 of 15)	intron (NM_134129, intron 1 of 15)	769.0	NM_001253843	28000.0	Mm.491104	NM_134129	ENSMUSG00000024735	Prpf19	AA617263|AL024362|D19Wsu55e|NMP200|PSO4|Prp19|Snev	pre-mRNA processing factor 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152534858-2	chr1	152534358	152535358	+	695.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 12 of 17)	L2b|LINE|L2	90359.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-76160084-3	chr18	76159585	76160585	+	695.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10467.0	NR_105776	102465184.0		NR_105776	ENSMUSG00000098276	Mir6358	Gm27830|mmu-mir-6358	microRNA 6358	ncRNA	0.0	12.0	0.0	0.0	1.0	0.0
Merged-chr4-126204298-2	chr4	126203761	126204761	+	695.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21A|LTR|ERV1	-1551.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	56.0	128.5	72.0	70.5	137.0	95.5
Merged-chr17-63875650-3	chr17	63875157	63876157	+	695.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 1 of 18)	MLTR31FA_MM|LTR|ERVK	-2409.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3859965-2	chr12	3859465	3860465	+	695.666687	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045884, exon 4 of 4)	non-coding (NR_045884, exon 4 of 4)	2279.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-6061379-2	chr13	6060879	6061879	+	695.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	199890.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121589694-2	chr8	121589194	121590194	+	695.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026160)	promoter-TSS (NM_026160)	-774.0	NM_026160	67443.0	Mm.28357	NM_026160	ENSMUSG00000031812	Map1lc3b	1010001C15Rik|Atg8|LC3b|Map1lc3	microtubule-associated protein 1 light chain 3 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172083286-2	chr1	172082742	172083742	+	695.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021607)	promoter-TSS (NM_021607)	-493.0	NM_021607	59287.0	Mm.218203	NM_021607	ENSMUSG00000003458	Ncstn	9430068N19Rik|AA727311|Aph2|D1Dau13e|Kiaa0253|Nct|mKIAA0253	nicastrin	protein-coding	38.0	177.5	108.5	57.0	105.5	127.5
Merged-chr3-108345520-2	chr3	108345020	108346020	+	695.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019972, intron 12 of 19)	intron (NM_019972, intron 12 of 19)	-19391.0	NM_026831	68753.0	Mm.75201	NM_026831	ENSMUSG00000068745	Mybphl	1110037P11Rik	myosin binding protein H-like	protein-coding	1.5	9.0	7.5	1.5	13.0	4.0
Merged-chr17-34650726-4	chr17	34650288	34651288	+	695.625	f1_balb.idr|f1_c57bl6.idr	exon (NM_017406, exon 8 of 18)	exon (NM_017406, exon 8 of 18)	3642.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	0.0	9.0	0.0	0.0	0.0	3.5
Merged-chr19-59024791-4	chr19	59024292	59025292	+	695.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 8 of 16)	ID_B1|SINE|B4	51277.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173553981-2	chr2	173553481	173554481	+	695.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24360.0	NM_001199955	70065.0	Mm.425115	NM_027303	ENSMUSG00000027517	Ankrd60	1700019A24Rik|1700030G11Rik	ankyrin repeat domain 60	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-82992294-3	chr8	82991786	82992786	+	695.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 2 of 6)	intron (NM_177378, intron 2 of 6)	128930.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	23.5	57.0	40.0	5.0	11.5	4.5
Merged-chr9-20831112-4	chr9	20830585	20831585	+	695.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12581.0	NM_001030290	235033.0	Mm.297661	NM_001030290	ENSMUSG00000053773	Rdh8	Gm182|prRDH	retinol dehydrogenase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-30266025-3	chr12	30265519	30266519	+	695.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324520, intron 8 of 16)	intron (NM_001324520, intron 8 of 16)	107356.0	NM_172951	268534.0	Mm.279765	NM_172951	ENSMUSG00000020672	Sntg2	2210008K22Rik|9530013L23|BB121248|G2syn|Syn5	syntrophin, gamma 2	protein-coding	4.5	1.0	5.0	10.0	2.0	4.0
Merged-chr1-173441376-3	chr1	173440871	173441871	+	695.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 2 of 8)	intron (NM_001013779, intron 2 of 8)	20767.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	5.0	23.5	9.5	0.0	12.0	13.0
Merged-chr6-124641239-2	chr6	124640739	124641739	+	695.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5154.0	NM_173864	317677.0	Mm.483270	NM_173864	ENSMUSG00000079343	C1s2	C1sb|EG317677|Gm5077	complement component 1, s subcomponent 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-10654760-2	chr11	10654260	10655260	+	695.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-459256.0	NM_177033	319922.0	Mm.337851	NM_177033	ENSMUSG00000050830	Vwc2	A930041G11Rik|G11|PSST739|UNQ739|cradin	von Willebrand factor C domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13231713-2	chr9	13231213	13232213	+	695.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14028.0	NM_001033181	77532.0	Mm.459434	NM_001033181	ENSMUSG00000079083	Jrkl	C030035D04Rik|HHMJG	Jrk-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90788308-2	chr5	90787808	90788808	+	695.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_203320)	TTS (NM_203320)	2207.0	NM_203320	330122.0	Mm.244289	NM_203320	ENSMUSG00000029379	Cxcl3	Dcip1|Gm1960	chemokine (C-X-C motif) ligand 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95798255-2	chr16	95797755	95798755	+	695.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95848.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139383793-2	chr5	139383293	139384293	+	695.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	3154.0	NM_030258	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-60727355-2	chr14	60726855	60727855	+	695.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033272, intron 4 of 12)	intron (NM_001033272, intron 4 of 12)	-5549.0	NM_001310594	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3668114-2	chr11	3667614	3668614	+	695.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198162, intron 3 of 25)	intron (NM_198162, intron 3 of 25)	9414.0	NM_198162	74522.0	Mm.139127	NM_198162	ENSMUSG00000034543	Morc2a	8430403M08Rik|Zcwcc1	microrchidia 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28947069-2	chr17	28946569	28947569	+	695.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4807.0	NM_153390	69307.0	Mm.107605	NM_153390	ENSMUSG00000045378	Pxt1	1700001G18Rik|Stepp	peroxisomal, testis specific 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55835179-2	chr12	55834679	55835679	+	695.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-1187.0	NM_001037756	52592.0	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-11674545-2	chr18	11674045	11675045	+	695.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045527, intron 3 of 17)	B3|SINE|B2	17196.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	2.0	4.5	1.0	0.5	1.0	6.5
Merged-chr17-78374887-3	chr17	78374391	78375391	+	695.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_015800, exon 17 of 17)	3' UTR (NM_015800, exon 17 of 17)	43261.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34103262-2	chr10	34102762	34103762	+	695.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162937, intron 6 of 6)	RLTR12D|LTR|ERVK	-6743.0	NM_178908	103511.0	Mm.66334	NM_178908	ENSMUSG00000049872	Fam26e	BB146404|Calhm5	family with sequence similarity 26, member E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120538042-2	chr5	120537542	120538542	+	695.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145853, intron 25 of 27)	intron (NM_145853, intron 25 of 27)	26850.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-10872146-2	chr8	10871646	10872646	+	695.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040705, exon 6 of 6)	non-coding (NR_040705, exon 6 of 6)	10308.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52569783-2	chr13	52569283	52570283	+	695.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_046069)	TTS (NR_046069)	3442.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67606676-2	chr18	67606176	67607176	+	695.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34679.0	NM_001357523	225659.0	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	7.5	4.0	2.0	10.5	3.5	3.5
Merged-chr2-122303092-2	chr2	122302591	122303591	+	695.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025777)	TTS (NM_025777)	4191.0	NM_025777	66811.0	Mm.171333	NM_025777	ENSMUSG00000027225	Duoxa2	9030623N16Rik|Nip2	dual oxidase maturation factor 2	protein-coding	0.0	2.0	2.0	17.5	7.0	2.0
Merged-chr17-71196274-2	chr17	71195774	71196774	+	695.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	MER20|DNA|hAT-Charlie	-8380.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	83.5	94.5	59.5	15.5	67.5	40.5
Merged-chr4-133138666-1	chr4	133138166	133139166	+	695.5	f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	(TGG)n|Simple_repeat|Simple_repeat	8033.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	86.0	152.0	135.5	43.0	112.5	69.5
Merged-chr15-79504780-2	chr15	79504280	79505280	+	695.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008427, intron 1 of 1)	intron (NM_008427, intron 1 of 1)	461.0	NM_008427	16520.0	Mm.39759	NM_008427	ENSMUSG00000044216	Kcnj4	IRK3|Kcnf2|MB-IRK3	potassium inwardly-rectifying channel, subfamily J, member 4	protein-coding	0.0	0.0	0.0	2.0	0.0	0.0
Merged-chr16-10481618-2	chr16	10481118	10482118	+	695.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243760, intron 1 of 18)	intron (NM_001243760, intron 1 of 18)	1546.0	NM_001302618	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118179403-2	chr11	118178903	118179903	+	695.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 9 of 12)	intron (NM_001112700, intron 9 of 12)	33339.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127435256-2	chr2	127434756	127435756	+	695.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029629)	TTS (NM_029629)	9309.0	NM_029629	68126.0	Mm.288676	NM_029629	ENSMUSG00000027371	Fahd2a	1500003K14Rik|B430104H02Rik|Cgi-105|Fahd2	fumarylacetoacetate hydrolase domain containing 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr5-110672420-2	chr5	110671920	110672920	+	695.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029337, intron 46 of 51)	intron (NM_029337, intron 46 of 51)	-6279.0	NR_105993	102466216.0		NR_105993	ENSMUSG00000099284	Mir7026	Gm27988|mmu-mir-7026	microRNA 7026	ncRNA	7.0	4.0	0.0	0.0	0.0	0.0
Merged-chr17-6748735-2	chr17	6748235	6749235	+	695.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 6 of 12)	intron (NM_009510, intron 6 of 12)	34045.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-38011383-2	chr3	38010883	38011883	+	695.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	112570.0	NR_040559	626410.0	Mm.389417	NR_040559	ENSMUSG00000106461	Gm20755	-	predicted gene, 20755	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-90360111-2	chr13	90359620	90360620	+	695.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	270453.0	NM_025335	66074.0	Mm.241387	NM_025335	ENSMUSG00000012422	Tmem167	0610041E09Rik|5730424F14Rik|AU041184|AW537806|Gm10085|Tmem167a	transmembrane protein 167	protein-coding	2.0	2.0	0.0	0.0	0.0	8.5
Merged-chr4-72413089-2	chr4	72412589	72413589	+	695.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	211845.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24587333-2	chr5	24586833	24587833	+	695.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_133913, exon 1 of 4)	5' UTR (NM_133913, exon 1 of 4)	583.0	NM_133913	100910.0	Mm.140672	NM_133913	ENSMUSG00000038181	Chpf2	2010209O12Rik|AW060945|Gm42230|mKIAA1402|mir-671	chondroitin polymerizing factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116209411-2	chr3	116208911	116209911	+	695.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44073.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81283679-2	chr10	81283179	81284179	+	695.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013769, intron 2 of 20)	intron (NM_013769, intron 2 of 20)	2102.0	NM_001282096	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38431764-2	chr16	38431264	38432264	+	695.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134102, intron 1 of 10)	intron (NM_134102, intron 1 of 10)	1381.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	0.0	5.0	10.5	0.0	2.5	2.5
Merged-chr7-99833952-2	chr7	99833452	99834452	+	695.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5535.0	NM_016720	50877.0	Mm.103703	NM_016720	ENSMUSG00000035239	Neu3	-	neuraminidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-116973990-2	chr2	116973490	116974490	+	695.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73838.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	6.5	5.5	9.0	6.5	5.5	10.0
Merged-chr11-97900976-2	chr11	97900485	97901485	+	695.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16831.0	NM_001081435	72973.0	Mm.245939	NM_001081435	ENSMUSG00000070336	Fbxo47	2900052P03Rik|Gm1562	F-box protein 47	protein-coding	3.0	0.0	0.0	0.0	0.0	0.5
Merged-chr19-38745917-2	chr19	38745417	38746417	+	695.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019588, intron 19 of 31)	intron (NM_019588, intron 19 of 31)	73320.0	NM_021315	57753.0	Mm.86482	NM_021315	ENSMUSG00000024999	Noc3l	AF233884|Fad24	NOC3 like DNA replication regulator	protein-coding	3.0	2.0	0.0	3.0	2.0	0.0
Merged-chr12-91740754-2	chr12	91740254	91741254	+	695.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 2 of 6)	intron (NM_175367, intron 2 of 6)	45682.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103174367-2	chr11	103173867	103174867	+	695.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019679, intron 1 of 26)	intron (NM_019679, intron 1 of 26)	3229.0	NM_019679	57778.0	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61643390-4	chr8	61642929	61643929	+	695.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	-52260.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	16.0	10.5	10.5	6.5	13.5	20.5
Merged-chr18-73844519-4	chr18	73843989	73844989	+	695.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14896.0	NM_027741	71263.0	Mm.126220	NM_027741	ENSMUSG00000064036	Mro	4930507C04Rik|4933435E20Rik	maestro	protein-coding	6.0	1.0	0.0	0.0	1.5	0.5
Merged-chr2-147010366-4	chr2	147009852	147010852	+	695.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-2647.0	NM_001356403	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	11.0	16.0	8.5	20.0	25.0	26.5
Merged-chr12-32138530-3	chr12	32138046	32139046	+	695.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69792.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	5.5	7.0	9.5	13.5	3.5	11.0
Merged-chr9-16115400-2	chr9	16114900	16115900	+	695.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	-240844.0	NM_145712	244701.0	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108981671-4	chr8	108981158	108982158	+	695.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2-int|LTR|ERVL-MaLR	44798.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	4.5	1.5	2.0	2.0	4.5	4.5
Merged-chr13-52075588-2	chr13	52075088	52076088	+	695.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21153.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145229968-2	chr4	145229468	145230468	+	695.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	16902.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165853888-2	chr1	165853388	165854388	+	695.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113391, intron 1 of 7)	intron (NM_001113391, intron 1 of 7)	65207.0	NM_001113392	12503.0	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35050701-3	chr12	35050206	35051206	+	695.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	3517.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	66.5	192.0	110.5	31.5	118.5	75.0
Merged-chr9-67841057-1	chr9	67840557	67841557	+	695.333313	f1_balb.idr	intron (NM_177184, intron 1 of 84)	intron (NM_177184, intron 1 of 84)	661.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	48.5	100.5	92.0	73.5	179.5	140.5
Merged-chr13-74247206-3	chr13	74246697	74247697	+	695.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317351, intron 3 of 9)	intron (NM_001317351, intron 3 of 9)	-38497.0	NM_177333	211446.0	Mm.261859	NM_177333	ENSMUSG00000034152	Exoc3	2810050O03Rik|E430013E20Rik|Sec6|Sec6l1	exocyst complex component 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-100495271-2	chr10	100494771	100495771	+	695.31665	f1_balb.idr|f1_c57bl6.idr	intron (NM_146009, intron 6 of 52)	intron (NM_146009, intron 6 of 52)	6982.0	NM_146009	216274.0	Mm.229114	NM_146009	ENSMUSG00000019971	Cep290	BC004690|Nphp6|b2b1454Clo|b2b1752Clo	centrosomal protein 290	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76973962-2	chr15	76973462	76974462	+	695.299988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25701.0	NM_001347540	117171.0	Mm.322968	NM_054099	ENSMUSG00000063236	1110038F14Rik	-	RIKEN cDNA 1110038F14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105902898-2	chr5	105902415	105903415	+	695.299988	f1_balb.idr|f1_c57bl6.idr	intron (NR_030777, intron 5 of 9)	L1_Rod|LINE|L1	26347.0	NM_018759	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	5.5	10.0	3.5	24.5	8.5	7.5
Merged-chr11-121475927-3	chr11	121475419	121476419	+	695.255554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029878, intron 7 of 38)	intron (NM_029878, intron 7 of 38)	23970.0	NM_029878	108903.0	Mm.23686	NM_029878	ENSMUSG00000039230	Tbcd	2310057L06Rik|A030005L14Rik|mKIAA0988	tubulin-specific chaperone d	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-52294300-3	chr10	52293815	52294815	+	695.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025705, intron 5 of 10)	intron (NM_025705, intron 5 of 10)	60696.0	NM_025705	66686.0	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21366745-2	chr5	21366245	21367245	+	695.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	-5928.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88636875-2	chr1	88636375	88637375	+	695.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C2|LTR|ERVK	65316.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-127614998-5	chr5	127614480	127615480	+	695.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133895, intron 1 of 7)	intron (NM_133895, intron 1 of 7)	2412.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-24980907-2	chr12	24980406	24981406	+	695.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081378, intron 1 of 31)	intron (NM_001081378, intron 1 of 31)	5974.0	NM_001081378	77480.0	Mm.250641	NM_001081378	ENSMUSG00000036333	Kidins220	3110039L19Rik|AI194387|AI316525|C330002I19Rik|mKIAA1250	kinase D-interacting substrate 220	protein-coding	47.0	139.5	110.5	42.5	59.5	55.0
Merged-chr9-110716933-2	chr9	110716433	110717433	+	695.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25677.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150872798-3	chr2	150872308	150873308	+	695.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 1 of 12)	intron (NR_151505, intron 1 of 12)	-30238.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-107248847-3	chr7	107248337	107249337	+	695.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	39392.0	NM_029660	76572.0	Mm.128134	NM_029660	ENSMUSG00000073894	Rbmxl2	1700012H05Rik|Hnrnpg-t	RNA binding motif protein, X-linked-like 2	protein-coding	1.0	1.5	2.5	1.0	1.5	2.5
Merged-chr9-15029226-3	chr9	15028741	15029741	+	695.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019482, intron 1 of 4)	intron (NM_019482, intron 1 of 4)	16237.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-104408493-4	chr7	104407982	104408982	+	695.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009099)	TTS (NM_009099)	37643.0	NM_001357467	20128.0	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	6.0	16.5	12.0	5.0	21.5	4.0
Merged-chr5-92098893-3	chr5	92098390	92099390	+	695.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-15146.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	3.5	1.0	7.5	3.5	0.5	9.0
Merged-chr10-13984987-2	chr10	13984487	13985487	+	695.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	18608.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	5.5	6.0	6.5	13.0	5.0	5.5
Merged-chr17-28015171-1	chr17	28014671	28015671	+	695.0	f0_balb.idr	intron (NM_181413, intron 12 of 24)	intron (NM_181413, intron 12 of 24)	65413.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-92967536-2	chr7	92967036	92968036	+	695.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92283.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70977393-1	chr14	70976893	70977893	+	695.0	f0_balb.idr	intron (NM_001302094, intron 7 of 7)	intron (NM_001302094, intron 7 of 7)	87286.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	12.5	15.5	3.0	3.5	21.5	25.0
Merged-chr16-14535898-1	chr16	14535398	14536398	+	695.0	f0_balb.idr	Intergenic	RMER16_Mm|LTR|ERVK	-26419.0	NR_033556	545280.0	Mm.123679	NR_033556		A630010A05Rik	-	RIKEN cDNA A630010A05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21788064-2	chr13	21787564	21788564	+	695.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178184)	promoter-TSS (NM_178184)	576.0	NM_001290466	319188.0	Mm.264645	NM_178202	ENSMUSG00000069308	Hist1h2bp	-	histone cluster 1, H2bp	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115652057-2	chr8	115651557	115652557	+	695.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54837.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-40906939-2	chr14	40906439	40907439	+	695.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001316748, exon 9 of 9)	3' UTR (NM_001316748, exon 9 of 9)	-13974.0	NM_177816	328381.0	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-100434473-1	chr9	100433973	100434973	+	695.0	f0_balb.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	52000.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	4.0	5.5	5.0	6.5	6.5	11.0
Merged-chr2-38486802-2	chr2	38486302	38487302	+	695.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24895.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-111103589-2	chr5	111103090	111104090	+	695.0	f0_balb.idr|f1_balb.idr	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	99446.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	9.0	2.0	0.0	6.5	14.5	3.0
Merged-chr9-5345504-4	chr9	5345011	5346011	+	695.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009808)	promoter-TSS (NM_009808)	35.0	NM_009808	12364.0	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43676008-2	chr7	43675508	43676508	+	695.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145582, intron 2 of 2)	intron (NM_145582, intron 2 of 2)	3977.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8781146-1	chr10	8780646	8781646	+	695.0	f1_balb.idr	intron (NM_175155, intron 7 of 19)	intron (NM_175155, intron 7 of 19)	104924.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.0	14.5	1.0	4.0	9.5	7.5
Merged-chr2-35491392-2	chr2	35490892	35491892	+	695.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-29943.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14887700-2	chr8	14887200	14888200	+	695.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012000)	promoter-TSS (NM_012000)	-836.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116330988-3	chr9	116330501	116331501	+	695.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	141821.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67387880-2	chr18	67387380	67388380	+	695.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2851.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	3.0	2.0	0.0	1.5	4.5	1.5
Merged-chr18-60690644-2	chr18	60690144	60691144	+	695.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348100, intron 13 of 14)	intron (NM_001348100, intron 13 of 14)	27234.0	NR_045401	328963.0	Mm.417203	NR_045401		G630071F17Rik	G630071F17	RIKEN cDNA G630071F17 gene	ncRNA	0.0	0.0	0.5	0.0	0.0	4.0
Merged-chr5-142768109-2	chr5	142767609	142768609	+	695.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178242, intron 10 of 15)	MER20|DNA|hAT-Charlie	49278.0	NM_178242	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-43506461-3	chr16	43505974	43506974	+	695.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 3 of 6)	intron (NM_181058, intron 3 of 6)	-86278.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-8674151-3	chr2	8673648	8674648	+	695.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-515367.0	NR_038180	73438.0	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165888532-2	chr2	165888032	165889032	+	695.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3694.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118483216-4	chr7	118482666	118483666	+	695.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8809.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	89.0	235.0	122.5	150.5	263.5	162.5
Merged-chr8-25696282-2	chr8	25695782	25696782	+	695.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081269, intron 15 of 22)	B2_Mm1t|SINE|B2	-23766.0	NR_121642	71910.0	Mm.385055	NM_028000	ENSMUSG00000031570	Plpp5	1810019D05Rik|2310022A04Rik|AW045471|Ppapdc1|Ppapdc1b	phospholipid phosphatase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-87536767-2	chr8	87536267	87537267	+	695.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27140.0	NM_177901	330820.0	Mm.212913	NM_177901	ENSMUSG00000069971	4933402J07Rik	-	RIKEN cDNA 4933402J07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-108620707-1	chr4	108620207	108621207	+	695.0	f0_balb.idr	intron (NM_177045, intron 1 of 24)	intron (NM_177045, intron 1 of 24)	751.0	NM_177045	319965.0	Mm.151129	NM_177045	ENSMUSG00000028582	Cc2d1b	A830039B04Rik|Freud2	coiled-coil and C2 domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120526779-2	chr8	120526279	120527279	+	695.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	-9078.0	NM_001145897	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120476299-1	chr14	120475799	120476799	+	695.0	f0_balb.idr	Intergenic	Intergenic	-2162.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-82750281-1	chr6	82749781	82750781	+	695.0	f1_c57bl6.idr	intron (NM_013820, intron 2 of 17)	B2_Mm2|SINE|B2	24173.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	11.0	10.5	10.5	13.5	18.5	9.0
Merged-chr2-32129900-2	chr2	32129400	32130400	+	695.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21248.0	NM_172661	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22881212-1	chr8	22880712	22881712	+	695.0	f0_balb.idr	intron (NM_001081149, intron 3 of 17)	intron (NM_001081149, intron 3 of 17)	21673.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13669997-2	chr9	13669497	13670497	+	695.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173776, intron 1 of 3)	intron (NM_173776, intron 1 of 3)	7537.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97836466-2	chr15	97835966	97836966	+	695.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	-4699.0	NM_001204276	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-37389781-1	chr2	37389281	37390281	+	695.0	f0_balb.idr	exon (NM_001290642, exon 11 of 22)	exon (NM_001290642, exon 11 of 22)	10347.0	NR_028535	100217435.0		NR_028535		Snord90	MBII-295	small nucleolar RNA, C/D box 90	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182955278-3	chr1	182954784	182955784	+	695.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016928, intron 1 of 3)	intron (NM_016928, intron 1 of 3)	496.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0.0	3.5	6.0	0.0	9.5	5.0
Merged-chr2-5426658-2	chr2	5426158	5427158	+	695.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030601, intron 1 of 1)	intron (NR_030601, intron 1 of 1)	47268.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-65319442-2	chr7	65318942	65319942	+	695.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009386, intron 15 of 27)	MER20|DNA|hAT-Charlie	51802.0	NM_001163574	21872.0	Mm.4342	NM_009386	ENSMUSG00000030516	Tjp1	ZO1	tight junction protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117712637-2	chr10	117712137	117713137	+	695.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1879.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4962805-2	chr2	4962305	4963305	+	695.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13317.0	NM_001311208	68527.0	Mm.27791	NM_026754	ENSMUSG00000026668	Ucma	1110017I16Rik|AW121955|Grp	upper zone of growth plate and cartilage matrix associated	protein-coding	0.5	3.0	2.5	4.0	2.0	2.5
Merged-chr1-162697395-2	chr1	162696895	162697895	+	695.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081290, intron 19 of 34)	intron (NM_001081290, intron 19 of 34)	-39176.0	NM_001177581	100038657.0	Mm.416999	NM_001177581	ENSMUSG00000091060	Myocos	7420461P10Rik	myocilin opposite strand	protein-coding	6.0	5.0	2.5	6.0	4.0	5.5
Merged-chr13-55486226-2	chr13	55485726	55486726	+	695.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177371, intron 1 of 14)	intron (NM_001177371, intron 1 of 14)	1850.0	NM_001177371	56320.0	Mm.19016	NM_019813	ENSMUSG00000034675	Dbn1	-	drebrin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-53462642-2	chr17	53462142	53463142	+	695.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172497, exon 1 of 13)	exon (NM_172497, exon 1 of 13)	679.0	NM_172497	211482.0	Mm.60887	NM_172497	ENSMUSG00000023931	Efhb	4921525D22Rik	EF hand domain family, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123897974-1	chr5	123897474	123898474	+	695.0	f1_balb.idr	Intergenic	B4|SINE|B4	-9301.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	43.0	107.5	109.5	87.0	193.0	173.5
Merged-chr7-12937238-2	chr7	12936738	12937738	+	695.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	9822.0	NM_029809	381845.0	Mm.439896	NM_029809	ENSMUSG00000033967	Rnf225	2310014L17Rik|AV237412|C77118	ring finger protein 225	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75234273-2	chr14	75233773	75234773	+	695.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 2 of 3)	Lx7|LINE|L1	-8014.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122549851-2	chr8	122549352	122550352	+	695.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037298, intron 1 of 50)	intron (NM_001037298, intron 1 of 50)	1477.0	NM_001037298	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	8.5	4.5	13.0	7.0	7.5	3.5
Merged-chr8-4413343-2	chr8	4412843	4413843	+	695.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63755.0	NM_009138	20300.0	Mm.7275	NM_009138	ENSMUSG00000023235	Ccl25	A130072A22Rik|AI852536|CKb15|Scya25|TECK	chemokine (C-C motif) ligand 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102952679-2	chr2	102952179	102953179	+	695.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-51014.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109780191-2	chr8	109779691	109780691	+	695.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301211, intron 1 of 22)	intron (NM_001301211, intron 1 of 22)	1608.0	NM_001301211	11765.0	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117140282-2	chr4	117139772	117140772	+	695.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6309.0	NM_001313916	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	8.0	0.0	4.5	12.0	4.5	3.0
Merged-chr9-42473605-2	chr9	42473105	42474105	+	695.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1347.0	NM_173038	272589.0	Mm.34483	NM_173038	ENSMUSG00000037287	Tbcel	D330014K23|E130107N23Rik|Lrrc35	tubulin folding cofactor E-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75194282-1	chr11	75193782	75194782	+	695.0	f1_balb.idr	exon (NM_177708, exon 1 of 2)	exon (NM_177708, exon 1 of 2)	289.0	NM_177708	237847.0	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	0.0	2.0	0.0	0.0	0.0	0.0
Merged-chr1-10231822-2	chr1	10231322	10232322	+	695.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001102430, intron 1 of 37)	intron (NM_001102430, intron 1 of 37)	848.0	NM_001102430	211673.0	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-54491245-2	chr8	54490745	54491745	+	695.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38753.0	NM_029701	76687.0	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik|SPC22/23	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-42007147-2	chr2	42006647	42007647	+	695.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053011, intron 2 of 90)	Lx9|LINE|L1	440421.0	NR_105754	102465171.0		NR_105754	ENSMUSG00000098660	Mir6336	Gm27584|mmu-mir-6336	microRNA 6336	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98514659-2	chr15	98514159	98515159	+	695.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5175.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-16815532-2	chr15	16815032	16816032	+	695.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009869, intron 1 of 10)	Lx3C|LINE|L1	37431.0	NM_009869	12565.0	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-118569657-1	chr1	118569157	118570157	+	695.0	f0_balb.idr	intron (NM_001359330, intron 33 of 39)	ORR1D2|LTR|ERVL-MaLR	-58288.0	NM_023755	81879.0	Mm.24621	NM_023755	ENSMUSG00000026380	Tfcp2l1	1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1	transcription factor CP2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100617441-2	chr15	100616941	100617941	+	695.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011873, intron 2 of 3)	B2_Mm2|SINE|B2	1779.0	NM_011873	23994.0	Mm.486175	NM_011873	ENSMUSG00000000346	Dazap2	AI314727|Brbp|Gcap28|Prtb|gt6-12|mKIAA0058	DAZ associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60382631-4	chr18	60382115	60383115	+	694.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001146275, exon 2 of 3)	5' UTR (NM_001146275, exon 2 of 3)	6586.0	NM_001146275	60440.0	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	54.5	78.5	66.5	39.5	34.0	63.5
Merged-chr11-83473949-3	chr11	83473451	83474451	+	694.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027427, intron 1 of 15)	intron (NM_027427, intron 1 of 15)	843.0	NM_027427	70439.0	Mm.181050	NM_027427	ENSMUSG00000020680	Taf15	2610111C21Rik|68kDa|TAFII68|Taf2n	TATA-box binding protein associated factor 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119445670-2	chr11	119445150	119446150	+	694.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45585.0	NR_153849	78439.0	Mm.440446	NR_153849	ENSMUSG00000109408	A930037H05Rik	Gm44935	RIKEN cDNA A930037H05 gene	ncRNA	0.0	9.5	6.5	6.0	2.0	6.0
Merged-chr4-150015592-2	chr4	150015087	150016087	+	694.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6564.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	10.0	28.0	14.5	7.5	17.5	10.0
Merged-chr8-69985347-4	chr8	69984829	69985829	+	694.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 1 of 12)	intron (NM_001286450, intron 1 of 12)	-10946.0	NM_001113346	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	3.5	0.0	0.0	0.0	0.0	3.5
Merged-chr8-13697676-2	chr8	13697176	13698176	+	694.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8213.0	NM_001101519	403185.0	Mm.252143	NM_001101519	ENSMUSG00000090336	4932443I19Rik	A230061C02Rik|Gm1106	RIKEN cDNA 4932443I19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-125607597-2	chr1	125607097	125608097	+	694.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46595.0	NM_028787	74150.0	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55076367-2	chr11	55075867	55076867	+	694.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177471, intron 1 of 6)	intron (NM_177471, intron 1 of 6)	1764.0	NM_177471	52570.0	Mm.22361	NM_177471	ENSMUSG00000049588	Ccdc69	2210021E03Rik|D11Ertd461e	coiled-coil domain containing 69	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26568180-2	chr17	26567663	26568663	+	694.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	6651.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	1.0	0.0	1.5	0.0	0.0	0.0
Merged-chr9-40713376-1	chr9	40712876	40713876	+	694.833313	f0_balb.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	27412.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	0.0	9.5	0.0	12.5	9.0	21.5
Merged-chr11-106382010-2	chr11	106381515	106382515	+	694.791626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010494, intron 1 of 3)	intron (NM_010494, intron 1 of 3)	766.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80103673-3	chr7	80103196	80104196	+	694.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173011, intron 1 of 10)	intron (NM_173011, intron 1 of 10)	11654.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115092870-2	chr5	115092370	115093370	+	694.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_029012, intron 8 of 10)	intron (NM_029012, intron 8 of 10)	15092.0	NM_001271591	100502825.0	Mm.361657	NM_001271590		Rpl37rt	EyeLinc4|Gm13826	ribosomal protein L37, retrotransposed	protein-coding	0.0	0.5	3.0	0.0	0.0	1.5
Merged-chr2-120290679-2	chr2	120290168	120291168	+	694.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1599.0	NM_001024137	78390.0	Mm.330507	NM_001024137	ENSMUSG00000070719	Pla2g4d	2610311B01Rik|Pla2delta|cPLA2delta	phospholipase A2, group IVD	protein-coding	0.0	0.0	0.5	0.0	0.0	2.0
Merged-chr18-60765873-2	chr18	60765373	60766373	+	694.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-8723.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	2.5	10.5	7.0	2.0	11.5	4.0
Merged-chr17-5583250-2	chr17	5582750	5583750	+	694.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	90650.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39504411-3	chr1	39503912	39504912	+	694.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-25657.0	NM_001357521	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53845615-1	chr18	53845115	53846115	+	694.666687	f0_balb.idr	Intergenic	Intergenic	-16498.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	0.5	2.5	0.0	0.5	0.0	0.0
Merged-chr18-39636745-3	chr18	39636245	39637245	+	694.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-136752.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12513201-1	chr19	12512701	12513701	+	694.666687	f0_balb.idr	Intergenic	L1MD|LINE|L1	-11205.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	1.5	2.5	0.0	1.5	14.0	3.5
Merged-chr2-145685103-3	chr2	145684615	145685615	+	694.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-16080.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-11492153-3	chr10	11491651	11492651	+	694.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-117073.0	NM_013898	30058.0	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-15730408-3	chr6	15729927	15730927	+	694.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 2 of 4)	intron (NM_175088, intron 2 of 4)	9766.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-53578462-3	chr17	53577966	53578966	+	694.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151733, intron 1 of 16)	RSINE1|SINE|B4	-5660.0	NM_001190846	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24173849-3	chr10	24173357	24174357	+	694.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016797, intron 2 of 9)	intron (NM_016797, intron 2 of 9)	24540.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70657684-2	chr11	70657184	70658184	+	694.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276285, intron 1 of 11)	intron (NM_001276285, intron 1 of 11)	508.0	NM_007933	13808.0	Mm.251322	NM_007933	ENSMUSG00000060600	Eno3	Eno-3|MSE	enolase 3, beta muscle	protein-coding	0.0	0.0	2.5	0.0	0.0	2.5
Merged-chr15-58251056-2	chr15	58250556	58251556	+	694.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36164.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124664211-2	chr2	124663711	124664711	+	694.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_172537, exon 17 of 17)	exon (NM_172537, exon 17 of 17)	10630.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37329656-2	chr9	37329156	37330156	+	694.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081429, intron 4 of 15)	intron (NM_001081429, intron 4 of 15)	18736.0	NM_001081429	245902.0	Mm.390150	NM_001081429	ENSMUSG00000034303	Ccdc15	A630039F14Rik|D030074L19	coiled-coil domain containing 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5163609-2	chr18	5163109	5164109	+	694.666626	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153824, exon 3 of 3)	non-coding (NR_153824, exon 3 of 3)	2122.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102495797-2	chr11	102495313	102496313	+	694.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159492, intron 6 of 7)	intron (NM_001159492, intron 6 of 7)	-25930.0	NM_010575	16399.0	Mm.26646	NM_010575	ENSMUSG00000034664	Itga2b	AI172977|CD41|CD41B|GpIIb|alphaIIb	integrin alpha 2b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152761247-2	chr3	152760747	152761747	+	694.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_025662, intron 9 of 10)	intron (NM_025662, intron 9 of 10)	47147.0	NM_025662	329777.0	Mm.331447	NM_025662	ENSMUSG00000039047	Pigk	3000001O05Rik|Gm38470|PIG-K	phosphatidylinositol glycan anchor biosynthesis, class K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-3776652-4	chr13	3776171	3777171	+	694.62085	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57C2|LTR|ERV1	27647.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr19-55800764-3	chr19	55800260	55801260	+	694.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	58950.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	1.5	4.5	0.5	3.5	0.5	7.0
Merged-chr18-56364411-3	chr18	56363900	56364900	+	694.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-35940.0	NM_001360917	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	6.0	0.0	2.0	0.0	1.5	0.0
Merged-chr19-29463236-2	chr19	29462736	29463736	+	694.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	intron (NM_021396, intron 5 of 5)	52317.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50037700-2	chr6	50037200	50038200	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72541.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	10.5	12.5	4.5	12.0	22.5	3.5
Merged-chr1-43635930-2	chr1	43635430	43636430	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-94672.0	NM_024283	78896.0	Mm.50109	NM_024283	ENSMUSG00000026051	1500015O10Rik	Ecrg4	RIKEN cDNA 1500015O10 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-68785185-2	chr16	68784685	68785685	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	1015196.0	NR_130991	78110.0	Mm.211406	NR_130991	ENSMUSG00000107073	4930428D20Rik	Gm43265	RIKEN cDNA 4930428D20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4418920-2	chr16	4418420	4419420	+	694.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009624, exon 2 of 11)	exon (NM_009624, exon 2 of 11)	1578.0	NM_001291910	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60751920-2	chr13	60751420	60752420	+	694.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 22 of 26)	intron (NM_134062, intron 22 of 26)	34444.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0.0	0.0	0.0	0.0	6.5	0.0
Merged-chr9-108047843-2	chr9	108047343	108048343	+	694.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013785, exon 6 of 6)	3' UTR (NM_013785, exon 6 of 6)	-1421.0	NM_177910	331026.0	Mm.22554	NM_177910	ENSMUSG00000070284	Gmppb	AI317178|E430010H19	GDP-mannose pyrophosphorylase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107302322-2	chr11	107301822	107302822	+	694.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	intron (NR_153311, intron 4 of 9)	-112941.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4476988-2	chr19	4476488	4477488	+	694.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134164, exon 1 of 8)	5' UTR (NM_134164, exon 1 of 8)	155.0	NM_134164	171180.0	Mm.262270	NM_134164	ENSMUSG00000049303	Syt12	-	synaptotagmin XII	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-6580658-2	chr6	6580165	6581165	+	694.5	f0_balb.idr|f1_balb.idr	Intergenic	Lx8|LINE|L1	-2007.0	NM_009169	20422.0	Mm.2469	NM_009169	ENSMUSG00000042541	Sem1	DSS1|Shfdg1|Shfg|Shfm1	SEM1, 26S proteasome complex subunit	protein-coding	1.0	0.0	3.5	12.0	16.5	0.0
Merged-chr6-72158303-2	chr6	72157803	72158803	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-35106.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102993134-3	chr11	102992579	102993579	+	694.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026551)	TTS (NM_026551)	6842.0	NR_105896	102466988.0		NR_105896	ENSMUSG00000098613	Mir6931	Gm27303|mmu-mir-6931	microRNA 6931	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118142005-2	chr11	118141505	118142505	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12786.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26529375-3	chr17	26528899	26529899	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-20927.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	8.5	0.0	5.0	7.5	5.5	6.5
Merged-chr15-90670278-2	chr15	90669770	90670770	+	694.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001033851, intron 1 of 3)	B4A|SINE|B4	9118.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	41.5	38.5	33.5	28.0	27.5	41.0
Merged-chr2-11783540-2	chr2	11783040	11784040	+	694.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177268, intron 3 of 6)	intron (NM_177268, intron 3 of 6)	5787.0	NM_177268	320816.0	Mm.260201	NM_177268	ENSMUSG00000047909	Ankrd16	2810455F06Rik|AI646698|D430029B21Rik	ankyrin repeat domain 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-22891818-2	chr6	22891318	22892318	+	694.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361349, intron 1 of 28)	B4|SINE|B4	16316.0	NM_001361349	19283.0	Mm.41639	NM_011219	ENSMUSG00000068748	Ptprz1	AI850339|DSD-1-PG|PTPbeta|PTPzeta|Ptprz|Ptpz|R-PTP-zeta|RPTPz|Rptpbeta	protein tyrosine phosphatase, receptor type Z, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-126860251-2	chr2	126859751	126860751	+	694.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164325, intron 1 of 38)	B3A|SINE|B2	16010.0	NM_001164325	58800.0	Mm.244705	NM_021450	ENSMUSG00000027365	Trpm7	2310022G15Rik|4833414K03Rik|5033407O22Rik|CHAK|CHAK1|LTrpC-7|Ltpr7|Ltrpc7|TRPPLIK	transient receptor potential cation channel, subfamily M, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25102080-2	chr12	25101576	25102576	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-5984.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	11.5	33.0	15.0	10.0	25.5	20.0
Merged-chr5-121713720-2	chr5	121713220	121714220	+	694.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009125, intron 1 of 24)	intron (NM_009125, intron 1 of 24)	2111.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60976475-2	chr18	60975975	60976975	+	694.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177407, intron 14 of 17)	intron (NM_177407, intron 14 of 17)	12921.0	NM_001286809	12322.0	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80683455-2	chr10	80682955	80683955	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7162.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-4601615-3	chr6	4601114	4602114	+	694.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145398, intron 1 of 17)	intron (NM_145398, intron 1 of 17)	548.0	NM_145398	213819.0	Mm.270703	NM_145398	ENSMUSG00000015189	Casd1	Cas1|Cast1|SOAT	CAS1 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46551010-2	chr18	46550510	46551510	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	23523.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121115183-2	chr8	121114683	121115683	+	694.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013519)	promoter-TSS (NM_013519)	-988.0	NM_013519	14234.0	Mm.14092	NM_013519	ENSMUSG00000046714	Foxc2	Fkh14|Hfhbf3|MFH-1|Mfh1	forkhead box C2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135198158-2	chr4	135197658	135198658	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME4a|LINE|L1	74602.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94339498-2	chr8	94338998	94339998	+	694.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019415, intron 8 of 24)	intron (NM_019415, intron 8 of 24)	10290.0	NM_001205311	20497.0	Mm.25804	NM_019415	ENSMUSG00000031766	Slc12a3	AI035291|NCC|NCCT|TSC	solute carrier family 12, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-45409227-2	chr8	45408727	45409727	+	694.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357317, intron 1 of 5)	intron (NM_001357317, intron 1 of 5)	1153.0	NM_001357316	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125412670-2	chr6	125412170	125413170	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32166.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	2.5
Merged-chr1-133611027-2	chr1	133610527	133611527	+	694.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009227)	promoter-TSS (NM_009227)	-747.0	NM_009227	20643.0	Mm.249110	NM_009227	ENSMUSG00000090553	Snrpe	AL022645|C76690|SME	small nuclear ribonucleoprotein E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122180837-2	chr14	122180337	122181337	+	694.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029556)	promoter-TSS (NM_029556)	-857.0	NM_029556	69634.0	Mm.34608	NM_029556	ENSMUSG00000025545	Clybl	0610033J05Rik|2310014M14Rik|AI256068|Clb	citrate lyase beta like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr12-17543444-2	chr12	17542944	17543944	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1429.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	0.0	0.0	0.0	0.0	1.5	0.0
Merged-chr17-5721038-2	chr17	5720538	5721538	+	694.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 5 of 8)	MIR3|SINE|MIR	-77619.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35899577-2	chr17	35899077	35900077	+	694.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001142745)	TTS (NM_001142745)	-2199.0	NM_001033630	69662.0	Mm.260159	NM_001033630	ENSMUSG00000050705	2310061I04Rik	-	RIKEN cDNA 2310061I04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-27263766-2	chr11	27263266	27264266	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	478658.0	NR_002890	654472.0	Mm.347777	NR_002890		Gm12070	-	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127969853-2	chr7	127969353	127970353	+	694.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347649, exon 3 of 15)	exon (NM_001347649, exon 3 of 15)	2374.0	NM_139149	233908.0	Mm.277680	NM_139149	ENSMUSG00000030795	Fus	D430004D17Rik|D930039C12Rik|Fus1|Tls	fused in sarcoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-4842962-2	chr9	4842462	4843462	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B2|LTR|ERVL	-46728.0	NM_019691	14802.0	Mm.209263	NM_019691	ENSMUSG00000025892	Gria4	GluA4|GluR-D|Glur-4|Glur4|Gluralpha4|spkw1	glutamate receptor, ionotropic, AMPA4 (alpha 4)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-59220782-2	chr12	59220282	59221282	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1299.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108664081-2	chr6	108663581	108664581	+	694.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011498, intron 4 of 4)	intron (NM_011498, intron 4 of 4)	-3147.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	5.0	1.0	1.5	4.5	2.5	3.0
Merged-chr1-85839195-2	chr1	85838695	85839695	+	694.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355046, intron 5 of 9)	MTE2b|LTR|ERVL-MaLR	45178.0	NM_001355047	12283.0	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98962412-3	chr11	98961903	98962903	+	694.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001176528, intron 1 of 7)	URR1A|DNA|hAT-Charlie	1932.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25259052-2	chr2	25258552	25259552	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3546.0	NM_175286	97031.0	Mm.308539	NM_175286	ENSMUSG00000048707	Tprn	C430004E15Rik|C87750	taperin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150568356-1	chr4	150567856	150568856	+	694.5	f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	83818.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	1.0	9.0	3.0	9.5	4.0	8.5
Merged-chr12-111528171-2	chr12	111527671	111528671	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-9930.0	NM_178041	217869.0	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33975088-2	chr2	33974588	33975588	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87142.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-39969567-2	chr15	39969067	39970067	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	6918.0	NR_045719	105976.0	Mm.394885	NR_045719		AU022793	-	expressed sequence AU022793	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165927542-2	chr2	165927051	165928051	+	694.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-42713.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	2.5	13.5	5.5	19.5	42.0	26.0
Merged-chr4-128948773-2	chr4	128948273	128949273	+	694.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301841, intron 5 of 8)	intron (NM_001301841, intron 5 of 8)	13682.0	NM_172875	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-53881054-2	chr6	53880554	53881554	+	694.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027749, intron 12 of 12)	intron (NM_027749, intron 12 of 12)	-60229.0	NM_025817	66873.0	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72736596-2	chr8	72736096	72737096	+	694.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113248, intron 5 of 6)	B1_Mus2|SINE|Alu	13326.0	NM_009188	20467.0	Mm.2137	NM_009188	ENSMUSG00000031622	Sin3b	2810430C10Rik	transcriptional regulator, SIN3B (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86489514-2	chr1	86489014	86490014	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-37043.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132792436-2	chr4	132791936	132792936	+	694.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033308, intron 2 of 5)	intron (NM_001033308, intron 2 of 5)	3928.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119488994-2	chr11	119488494	119489494	+	694.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153849, exon 2 of 4)	non-coding (NR_153849, exon 2 of 4)	2241.0	NR_153849	78439.0	Mm.440446	NR_153849	ENSMUSG00000109408	A930037H05Rik	Gm44935	RIKEN cDNA A930037H05 gene	ncRNA	2.0	0.0	0.0	0.0	0.0	0.5
Merged-chr1-134085996-2	chr1	134085496	134086496	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6841.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135653263-2	chr7	135652763	135653763	+	694.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015548)	promoter-TSS (NR_015548)	-949.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-123030851-2	chr7	123030351	123031351	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60287.0	NM_175023	19647.0	Mm.4480	NM_011247	ENSMUSG00000030779	Rbbp6	4933422O15Rik|AI316869|BB233631|C030034J04Rik|C77662|P2P-R|PACT	retinoblastoma binding protein 6, ubiquitin ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35336530-3	chr12	35336031	35337031	+	694.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-141634.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	12.5	10.5	4.0	0.5	3.5	2.5
Merged-chr5-108082553-1	chr5	108082053	108083053	+	694.400024	f0_c57.idr	intron (NM_001253879, intron 3 of 14)	B2_Mm2|SINE|B2	4388.0	NM_001253878	17765.0	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-5460135-2	chr15	5459635	5460635	+	694.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36183.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118117230-2	chr7	118116730	118117730	+	694.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-1083.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	14.0	16.0	27.0	13.5	24.5	7.0
Merged-chr17-35321103-2	chr17	35320603	35321603	+	694.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010390, intron 2 of 7)	CpG-6317	556.0	NM_001358790	15006.0	Mm.466882	NM_010390	ENSMUSG00000079507	H2-Q1	H-2Q1|Q1|Q1b|Q1d|Q1k|Qa-1|Qa1|Qed-1	histocompatibility 2, Q region locus 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95723427-2	chr16	95722927	95723927	+	694.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	21020.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53221469-3	chr15	53220959	53221959	+	694.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	124724.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34277903-3	chr6	34277411	34278411	+	694.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39532.0	NR_037965	626009.0	Mm.451	NR_028277		Gm6644	Akr1b3p|EG626009	Akr1b3 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191718902-3	chr1	191718357	191719357	+	694.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134829, intron 1 of 7)	CpG	462.0	NM_001134829	226856.0	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	0.0	11.5	5.5	0.0	13.0	5.5
Merged-chr3-81933591-3	chr3	81933083	81934083	+	694.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177662, intron 1 of 7)	intron (NM_177662, intron 1 of 7)	982.0	NM_177662	229445.0	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|AI118514	cathepsin O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67189160-3	chr10	67188672	67189672	+	694.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242396, intron 1 of 24)	intron (NM_001242396, intron 1 of 24)	3422.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46488338-2	chr19	46487838	46488838	+	694.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_015752, exon 12 of 12)	3' UTR (NM_015752, exon 12 of 12)	-13310.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-153567900-2	chr3	153567400	153568400	+	694.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 1 of 4)	intron (NM_011372, intron 1 of 4)	157233.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70222617-2	chr11	70222117	70223117	+	694.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1623.0	NM_172371	69309.0	Mm.93266	NM_172371	ENSMUSG00000044367	Slc16a13	1700007D07Rik	solute carrier family 16 (monocarboxylic acid transporters), member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155511127-2	chr4	155510627	155511627	+	694.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160017, intron 1 of 10)	intron (NM_001160017, intron 1 of 10)	19766.0	NM_001160016	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83414874-2	chr6	83414327	83415327	+	694.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347313, intron 3 of 11)	intron (NM_001347313, intron 3 of 11)	-13725.0	NR_105793	102465194.0		NR_105793	ENSMUSG00000099045	Mir6374	Gm27292|mmu-mir-6374	microRNA 6374	ncRNA	17.5	24.5	31.5	18.5	11.5	22.5
Merged-chr1-95397366-4	chr1	95396859	95397859	+	694.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	83731.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-79586155-2	chr14	79585655	79586655	+	694.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1505.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39481725-3	chr18	39481236	39482236	+	694.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	5509.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	0.0	0.0	1.0	0.0	1.0
Merged-chr17-34645862-2	chr17	34645362	34646362	+	694.222229	f1_balb.idr|f1_c57bl6.idr	exon (NM_019873, exon 2 of 2)	exon (NM_019873, exon 2 of 2)	979.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	0.5	18.5	3.5	6.5	1.0	2.5
Merged-chr3-123506420-2	chr3	123505922	123506922	+	694.200012	f1_balb.idr|f1_c57bl6.idr	exon (NM_008939, exon 11 of 11)	exon (NM_008939, exon 11 of 11)	1644.0	NR_028573	100306957.0	Mm.260791	NR_028573	ENSMUSG00000092730	Snora24	ACA24	small nucleolar RNA, H/ACA box 24	snoRNA	5.0	10.0	6.5	13.5	10.5	8.5
Merged-chr19-46740835-3	chr19	46740346	46741346	+	694.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_020577, exon 11 of 11)	3' UTR (NM_020577, exon 11 of 11)	-20763.0	NM_033569	94219.0	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	0.0	1.0	1.5	2.5	0.0	3.0
Merged-chr4-109120342-2	chr4	109119841	109120841	+	694.1999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355190, intron 2 of 21)	L1MC1|LINE|L1	-2305.0	NM_001134791	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14605674-1	chr8	14605174	14606174	+	694.166687	f0_balb.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-282862.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.0	2.0	4.0	0.0	0.0	0.5
Merged-chr15-59375062-4	chr15	59374593	59375593	+	694.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153548)	promoter-TSS (NM_153548)	895.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-17766235-2	chr5	17765735	17766735	+	694.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69661.0	NM_001159555	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140762439-2	chr5	140761939	140762939	+	694.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 3 of 3)	intron (NM_010302, intron 3 of 3)	38312.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54443362-2	chr14	54442862	54443862	+	694.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008608)	TTS (NM_008608)	11764.0	NM_008608	17387.0	Mm.280175	NM_008608	ENSMUSG00000000957	Mmp14	AI325305|MMP-X1|MT-MMP-1|MT1-MMP|sabe	matrix metallopeptidase 14 (membrane-inserted)	protein-coding	9.5	30.0	34.5	4.5	38.0	13.0
Merged-chr15-99391428-2	chr15	99390926	99391926	+	694.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1521.0	NM_026669	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	11.0	11.0	15.5	9.0	27.5	12.5
Merged-chr15-86142082-2	chr15	86141578	86142578	+	694.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 12 of 12)	intron (NM_145475, intron 12 of 12)	-43650.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	1.5	1.5	3.0	0.0	0.0	0.0
Merged-chr10-117304010-2	chr10	117303510	117304510	+	694.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11142.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80028437-2	chr10	80027978	80028978	+	694.041626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347074, intron 19 of 22)	intron (NM_001347074, intron 19 of 22)	8803.0	NM_027521	70719.0	Mm.243954	NM_027521	ENSMUSG00000035697	Arhgap45	6330406L22Rik|AW539505|Ha-1|Hmha1	Rho GTPase activating protein 45	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37824856-2	chr13	37824356	37825356	+	694.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1182.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-129431416-2	chr3	129430916	129431916	+	694.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2257.0	NR_033594	435755.0	Mm.430561	NR_033594	ENSMUSG00000105712	Pou5f1-rs4	EG435755|Gm5712|Oct4P1|Otf3-rs4|Otf3d	POU domain, class 5, transcription factor 1, related sequence 4	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45548906-3	chr17	45548414	45549414	+	694.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013749, intron 1 of 2)	intron (NM_001013749, intron 1 of 2)	763.0	NM_001013749	210573.0	Mm.329064	NM_001013749	ENSMUSG00000096847	Tmem151b	Gm323	transmembrane protein 151B	protein-coding	0.0	1.0	0.0	1.0	0.0	0.5
Merged-chr16-95710395-3	chr16	95709855	95710855	+	694.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011809, intron 3 of 9)	RLTR17B_Mm|LTR|ERVK	7948.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7743041-2	chr9	7742541	7743541	+	694.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21036.0	NM_133739	71929.0	Mm.283293	NM_133739	ENSMUSG00000050912	Tmem123	2310075C12Rik	transmembrane protein 123	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74384045-2	chr1	74383545	74384545	+	694.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013612, exon 12 of 15)	exon (NM_013612, exon 12 of 15)	-7564.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166070151-1	chr2	166069651	166070651	+	694.0	f1_c57bl6.idr	3' UTR (NM_008679, exon 23 of 23)	3' UTR (NM_008679, exon 23 of 23)	77514.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	1.5	1.5	0.0	1.0	1.5	0.0
Merged-chr15-8413274-2	chr15	8412774	8413774	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201232, intron 1 of 45)	intron (NM_201232, intron 1 of 45)	31189.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102047511-2	chr5	102047011	102048011	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	B2_Mm2|SINE|B2	22410.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-86604553-2	chr3	86604053	86605053	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077687, intron 40 of 50)	intron (NM_001077687, intron 40 of 50)	-56270.0	NM_011839	23937.0	Mm.389466	NM_011839	ENSMUSG00000057777	Mab21l2	-	mab-21-like 2 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119399038-1	chr9	119398538	119399538	+	694.0	f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-3140.0	NM_007397	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	5.0	1.5	0.5	4.0	1.0	1.0
Merged-chr5-66152915-2	chr5	66152415	66153415	+	694.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127382)	promoter-TSS (NM_001127382)	-961.0	NM_001127382	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	18.5	33.5	31.0	27.5	33.5	34.5
Merged-chr17-70400995-1	chr17	70400495	70401495	+	694.0	f1_balb.idr	intron (NM_001347411, intron 3 of 14)	intron (NM_001347411, intron 3 of 14)	-23797.0	NM_177639	224997.0	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	DLG associated protein 1	protein-coding	2.5	0.0	0.0	0.0	4.0	0.0
Merged-chr2-167389523-2	chr2	167389023	167390023	+	694.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-32187.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11978885-2	chr11	11978385	11979385	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177629, intron 2 of 15)	intron (NM_001177629, intron 2 of 15)	49086.0	NM_001177629	14783.0	Mm.273117	NM_010345	ENSMUSG00000020176	Grb10	5730571D09Rik|AI325020|Meg1|mKIAA0207	growth factor receptor bound protein 10	protein-coding	0.0	0.0	0.0	0.0	1.5	0.0
Merged-chr6-54282527-1	chr6	54282027	54283027	+	694.0	f0_balb.idr	intron (NM_001163640, intron 7 of 12)	Lx8|LINE|L1	9705.0	NM_023543	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148161265-2	chr4	148160765	148161765	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176848, intron 1 of 5)	intron (NM_176848, intron 1 of 5)	597.0	NM_176848	230904.0	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116682044-2	chr6	116681544	116682544	+	694.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-8208.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31143647-2	chr2	31143147	31144147	+	694.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1639.0	NM_001038700	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-140133230-2	chr7	140132730	140133730	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153783, intron 6 of 6)	intron (NM_153783, intron 6 of 6)	-4334.0	NM_199301	212508.0	Mm.296088	NM_199301	ENSMUSG00000039018	Mtg1	Gm169|Gtpbp7	mitochondrial ribosome-associated GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-35043136-2	chr5	35042636	35043636	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019447, intron 4 of 13)	intron (NM_019447, intron 4 of 13)	1627.0	NM_019447	54426.0	Mm.27369	NM_019447	ENSMUSG00000029102	Hgfac	HGFA	hepatocyte growth factor activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10488586-1	chr16	10488086	10489086	+	694.0	f0_balb.idr	intron (NM_007575, intron 1 of 18)	intron (NM_007575, intron 1 of 18)	408.0	NM_007575	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5769843-2	chr19	5769343	5770343	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155264, intron 3 of 15)	intron (NR_155264, intron 3 of 15)	1576.0	NM_023912	78891.0	Mm.276063	NM_023912	ENSMUSG00000024941	Scyl1	2810011O19Rik|C85140|Ntkl|mdf|mfd|p105	SCY1-like 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95333591-2	chr8	95333131	95334131	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133954, intron 2 of 6)	intron (NM_133954, intron 2 of 6)	1347.0	NM_133954	101985.0	Mm.29069	NM_133954	ENSMUSG00000031792	Usb1	AA960436	U6 snRNA biogenesis 1	protein-coding	0.0	0.0	1.0	0.0	7.0	1.0
Merged-chr12-100158339-2	chr12	100157839	100158839	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290303, intron 1 of 13)	MTB|LTR|ERVL-MaLR	1314.0	NM_001290303	217827.0	Mm.224076	NM_183155	ENSMUSG00000021179	Nrde2	6720454P05Rik	nrde-2 necessary for RNA interference, domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91387367-2	chr16	91386867	91387867	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 4 of 7)	MTE2b|LTR|ERVL-MaLR	14584.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5703325-2	chr19	5702825	5703825	+	694.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_022012)	TTS (NM_022012)	-1146.0	NM_010609	16530.0	Mm.440033	NM_010609	ENSMUSG00000024936	Kcnk7	2310014G03Rik|Kcnk6|Kcnk8|Knot|Mlk3	potassium channel, subfamily K, member 7	protein-coding	3.0	0.0	4.0	7.0	0.0	1.5
Merged-chr18-32423856-2	chr18	32423356	32424356	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 10 of 17)	intron (NM_001360876, intron 10 of 17)	-45572.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98969802-2	chr11	98969302	98970302	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361954, intron 3 of 7)	intron (NM_001361954, intron 3 of 7)	4930.0	NM_001361954	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49853839-1	chr16	49853339	49854339	+	694.0	f0_balb.idr	Intergenic	Intergenic	-1815.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107676648-1	chr9	107676148	107677148	+	694.0	f1_c57bl6.idr	exon (NM_008140, exon 6 of 9)	exon (NM_008140, exon 6 of 9)	2944.0	NM_008140	14685.0	Mm.284853	NM_008140	ENSMUSG00000034837	Gnat1	Gnat-1|Ird1|Ird2|Tralpha|irdc|irdr|transducin	guanine nucleotide binding protein, alpha transducing 1	protein-coding	0.0	0.0	1.0	0.0	8.5	0.5
Merged-chr1-132000632-2	chr1	132000132	132001132	+	694.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-6973.0	NM_007923	13714.0	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64512887-1	chr15	64512387	64513387	+	694.0	f0_balb.idr	Intergenic	Intergenic	-129968.0	NM_010026	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	1.5	2.0	2.5	1.5	0.0	3.5
Merged-chr2-27701964-2	chr2	27701464	27702464	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-7328.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125575801-1	chr7	125575301	125576301	+	694.0	f1_c57bl6.idr	exon (NM_001008700, exon 11 of 11)	exon (NM_001008700, exon 11 of 11)	23519.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	0.0	3.0	9.0	7.0	1.0	2.0
Merged-chr8-4254254-2	chr8	4253754	4254754	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133968, intron 1 of 4)	intron (NM_133968, intron 1 of 4)	1152.0	NM_133968	102209.0	Mm.28452	NM_133968	ENSMUSG00000011837	Snapc2	0610007H10Rik|AU015675	small nuclear RNA activating complex, polypeptide 2	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr12-80759180-2	chr12	80758680	80759680	+	694.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001008423, exon 2 of 2)	exon (NM_001008423, exon 2 of 2)	1535.0	NM_001008423	380768.0	Mm.29367	NM_001008423	ENSMUSG00000062961	Ccdc177	Gm1568	coiled-coil domain containing 177	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153515145-2	chr2	153514622	153515622	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134300, intron 1 of 10)	intron (NM_001134300, intron 1 of 10)	14849.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr12-76612590-2	chr12	76612090	76613090	+	694.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013675, exon 16 of 36)	exon (NM_013675, exon 16 of 36)	-64665.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121235099-2	chr11	121234599	121235599	+	694.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2137.0	NM_026272	67608.0	Mm.291832	NM_026272	ENSMUSG00000000056	Narf	4430402O11Rik	nuclear prelamin A recognition factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-37224808-3	chr8	37224301	37225301	+	694.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-200563.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	0.0	0.0	4.5	0.0	2.0	0.5
Merged-chr5-8417678-2	chr5	8417178	8418178	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013726, intron 2 of 11)	RMER15|LTR|ERVL	5038.0	NM_013726	27214.0	Mm.292470	NM_013726	ENSMUSG00000002297	Dbf4	AA545217|Ask	DBF4 zinc finger	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50121894-2	chr17	50121394	50122394	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	68603.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-69542179-1	chr13	69541679	69542679	+	694.0	f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-8315.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	2.0	1.0	5.0	0.0	4.5	0.0
Merged-chr11-3288687-3	chr11	3288220	3289220	+	694.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045109)	promoter-TSS (NR_045109)	-411.0	NR_045108	56218.0	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4639005-2	chr18	4638505	4639505	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081963, intron 1 of 3)	intron (NM_001081963, intron 1 of 3)	4076.0	NM_001081963	240185.0	Mm.33179	NM_001081963	ENSMUSG00000033960	Jcad	1110056P05Rik|9430020K01Rik|Gm328|mKIAA1462	junctional cadherin 5 associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-65608902-1	chr6	65608402	65609402	+	694.0	f0_balb.idr	intron (NM_001001495, intron 6 of 7)	intron (NM_001001495, intron 6 of 7)	18504.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19875643-2	chr7	19875143	19876143	+	694.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177036)	TTS (NM_177036)	12322.0	NM_177036	319930.0	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54752688-2	chr14	54752188	54753188	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 3 of 10)	(CA)n|Simple_repeat|Simple_repeat	29198.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	5.5	12.5	12.0	2.0	6.5	11.5
Merged-chr6-63257462-2	chr6	63256962	63257962	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008167, intron 1 of 15)	CpG	605.0	NM_008167	14804.0	Mm.439651	NM_008167	ENSMUSG00000071424	Grid2	B230104L07Rik|GluD2|GluRdelta2|Lc|Lc<J>|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr	glutamate receptor, ionotropic, delta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28771079-2	chr7	28770579	28771579	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022432, intron 2 of 15)	intron (NM_022432, intron 2 of 15)	4327.0	NM_001122766	64383.0	Mm.272443	NM_022432	ENSMUSG00000015149	Sirt2	5730427M03Rik|SIR2L2|Sir2l	sirtuin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125159899-2	chr6	125159399	125160399	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039669, intron 9 of 9)	PB1D9|SINE|Alu	5874.0	NM_008084	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	0.0	0.5	2.5	1.5	0.0	3.0
Merged-chr2-148039658-2	chr2	148039158	148040158	+	694.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5806.0	NM_001291067	15376.0	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-54944836-1	chr1	54944336	54945336	+	694.0	f0_balb.idr	Intergenic	MER121|DNA|TcMar?	-18449.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-74673171-3	chr2	74672640	74673640	+	694.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1873.0	NM_008274	15432.0	Mm.57124	NM_008274	ENSMUSG00000001823	Hoxd12	Hox-4.7|Hox-5.6	homeobox D12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79003730-2	chr15	79003230	79004230	+	694.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_138579, exon 22 of 24)	exon (NM_138579, exon 22 of 24)	1507.0	NR_105921	102465577.0		NR_105921	ENSMUSG00000099180	Mir6956	Gm27880|mmu-mir-6956	microRNA 6956	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3934770-2	chr19	3934270	3935270	+	694.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161428)	promoter-TSS (NM_001161428)	-416.0	NM_019449	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114621710-2	chr5	114621210	114622210	+	694.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_022017)	TTS (NM_022017)	36711.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80503734-2	chr10	80503234	80504234	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139226, intron 1 of 1)	intron (NM_139226, intron 1 of 1)	8828.0	NM_139226	246086.0	Mm.250572	NM_139226	ENSMUSG00000045518	Onecut3	OC-3|Oc3	one cut domain, family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117896931-1	chr10	117896431	117897431	+	694.0	f1_c57bl6.idr	Intergenic	Intergenic	-28528.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	25.0	35.0	28.5	8.0	26.5	27.5
Merged-chr1-60973205-2	chr1	60972705	60973705	+	694.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4709.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	6.5	27.0	10.5	2.0	13.5	15.0
Merged-chr15-74999029-2	chr15	74998529	74999529	+	694.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271417)	promoter-TSS (NM_001271417)	-998.0	NM_010738	110454.0	Mm.425949	NM_010738	ENSMUSG00000075602	Ly6a	Ly-6A.2|Ly-6A/E|Ly-6E.1|Sca-1|Sca1|TAP	lymphocyte antigen 6 complex, locus A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-30931176-2	chr1	30930676	30931676	+	694.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33C|LTR|ERVL	18534.0	NR_002688	433406.0	Mm.389003	NR_002688		Gm13363	-	predicted gene 13363	pseudo	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr2-59426548-2	chr2	59426048	59427048	+	694.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39866.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88450714-1	chr17	88450214	88451214	+	694.0	f0_balb.idr	intron (NM_001355742, intron 1 of 5)	MTA_Mm|LTR|ERVL-MaLR	10010.0	NM_001355742	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66615283-3	chr9	66614785	66615785	+	693.977783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22170.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57725766-4	chr10	57725336	57726336	+	693.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008863, intron 4 of 5)	intron (NM_008863, intron 4 of 5)	-59087.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-8350963-3	chr5	8350462	8351462	+	693.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	17198.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-28026341-4	chr3	28025824	28026824	+	693.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 3 of 25)	RMER10A|LTR|ERVL	42153.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101067195-4	chr11	101066713	101067713	+	693.854187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2881.0	NM_013792	27419.0	Mm.95452	NM_013792	ENSMUSG00000001751	Naglu	-	alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-24992368-2	chr19	24991891	24992891	+	693.833374	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-7138.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	0.0	29.0	25.0	12.5	22.0	31.0
Merged-chr5-23225175-3	chr5	23224687	23225687	+	693.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081231, intron 3 of 3)	intron (NM_001081231, intron 3 of 3)	209166.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	5.0	0.0	0.0	0.0	0.0	1.0
Merged-chr12-76472219-3	chr12	76471705	76472705	+	693.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27708.0	NR_028520	100041694.0	Mm.259350	NR_028520	ENSMUSG00000073000	Gm10451	-	predicted gene 10451	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98862944-2	chr11	98862444	98863444	+	693.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197940)	promoter-TSS (NM_197940)	-654.0	NM_197940	68524.0	Mm.28661	NM_197940	ENSMUSG00000038013	Wipf2	1110014J05Rik|5730509C05Rik|AA407487|Gm1176|Wich|Wire	WAS/WASL interacting protein family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-15160075-3	chr3	15159574	15160574	+	693.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	172228.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82872323-3	chr18	82871837	82872837	+	693.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16440.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-13099078-3	chr4	13098579	13099579	+	693.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	192242.0	NM_001171801	208820.0	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	0.0	0.5	0.0	2.0	0.0	1.5
Merged-chr5-138819908-2	chr5	138819408	138820408	+	693.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195128)	promoter-TSS (NM_001195128)	-172.0	NM_001195128	384244.0	Mm.485002	NM_001195128	ENSMUSG00000094504	Gm5294	EG384244	predicted gene 5294	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87732536-3	chr6	87732033	87733033	+	693.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159697, intron 1 of 7)	intron (NM_001159697, intron 1 of 7)	1664.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr15-77782672-3	chr15	77782143	77783143	+	693.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 15 of 40)	intron (NM_022410, intron 15 of 40)	-25633.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62228934-2	chr10	62228434	62229434	+	693.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 1 of 7)	intron (NM_197996, intron 1 of 7)	2284.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60694005-2	chr13	60693505	60694505	+	693.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	91794.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-53882020-2	chr1	53881509	53882509	+	693.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 17 of 28)	intron (NM_001001883, intron 17 of 28)	32585.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	1.0	35.0	11.5	15.0	16.5	15.5
Merged-chr9-107714189-2	chr9	107713689	107714689	+	693.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3714.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	0.0	6.0	9.5	3.5	2.5	2.0
Merged-chr15-21109406-2	chr15	21108946	21109946	+	693.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2006.0	NM_001008420	215654.0	Mm.300909	NM_001008420	ENSMUSG00000040452	Cdh12	Cdhb	cadherin 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-57928039-3	chr4	57927546	57928546	+	693.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11782.0	NM_178727	242484.0	Mm.23214	NM_178727	ENSMUSG00000052117	D630039A03Rik	-	RIKEN cDNA D630039A03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173935056-3	chr1	173934555	173935555	+	693.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001302651, exon 5 of 8)	exon (NM_001302651, exon 5 of 8)	7437.0	NM_001302649	15950.0	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Ifi203a|Ifi203b|Mndal	interferon activated gene 203	protein-coding	22.0	14.0	28.0	34.5	71.5	46.0
Merged-chr2-51284865-4	chr2	51284395	51285395	+	693.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040636, intron 1 of 2)	intron (NR_040636, intron 1 of 2)	43064.0	NR_040636	329404.0	Mm.417725	NR_040636	ENSMUSG00000086349	Gm13497	A730015I17	predicted gene 13497	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-36953252-6	chr8	36952763	36953763	+	693.694458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001194940)	promoter-TSS (NM_001194940)	-821.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	8.0	10.5	9.5	5.0	22.5	17.0
Merged-chr6-134432906-3	chr6	134432390	134433390	+	693.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355686, intron 5 of 5)	intron (NM_001355686, intron 5 of 5)	18462.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	24.5	25.5	29.0	34.0	19.5	26.5
Merged-chr2-75701391-3	chr2	75700899	75701899	+	693.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132727, intron 1 of 1)	intron (NR_132727, intron 1 of 1)	3264.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-70837497-3	chr6	70837003	70838003	+	693.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7012.0	NM_010121	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-54933737-1	chr1	54933237	54934237	+	693.666687	f0_balb.idr	Intergenic	Intergenic	-7350.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	3.0	1.5	0.0	3.0	1.5	0.0
Merged-chr2-24297036-3	chr2	24296536	24297536	+	693.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5840.0	NM_153077	215274.0	Mm.218750	NM_153077	ENSMUSG00000046845	Il1f10	-	interleukin 1 family, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25525548-3	chr15	25525047	25526047	+	693.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97003.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131613536-4	chr1	131613056	131614056	+	693.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14442.0	NM_011924	26361.0	Mm.89986	NM_011924	ENSMUSG00000026432	Avpr1b	AVPR3|V3/V1b|VIBR|VPR3	arginine vasopressin receptor 1B	protein-coding	3.5	6.0	2.5	0.0	1.0	1.5
Merged-chr3-139039344-2	chr3	139038844	139039844	+	693.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 2 of 13)	MTD|LTR|ERVL-MaLR	35857.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84071942-3	chr8	84071440	84072440	+	693.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009055, intron 1 of 20)	intron (NM_009055, intron 1 of 20)	5104.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	15.0	20.0	22.5	17.5	28.5	13.5
Merged-chr2-145675092-2	chr2	145674592	145675592	+	693.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-26103.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57487435-2	chr10	57486935	57487935	+	693.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008297, intron 1 of 11)	intron (NM_008297, intron 1 of 11)	1050.0	NM_008297	15500.0	Mm.261395	NM_008297	ENSMUSG00000019878	Hsf2	AI661205	heat shock factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-7766264-2	chr3	7765764	7766764	+	693.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-152504.0	NM_001313888	16196.0	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	0.0	0.0	0.0	0.5	1.5	0.5
Merged-chr12-103099365-4	chr12	103098836	103099836	+	693.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081017, intron 26 of 48)	intron (NM_001081017, intron 26 of 48)	142810.0	NM_133364	170952.0	Mm.217019	NM_133364	ENSMUSG00000041669	Prima1	B230212M13Rik|BB120497|PRiMA	proline rich membrane anchor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53067388-2	chr4	53066888	53067888	+	693.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 28 of 49)	intron (NM_013454, intron 28 of 49)	55508.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-21056406-3	chr2	21055907	21056907	+	693.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87533.0	NR_033225	433408.0	Mm.386941	NR_033225		Gm13375	-	predicted gene 13375	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133886408-2	chr4	133885947	133886947	+	693.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009097, intron 1 of 21)	intron (NM_009097, intron 1 of 21)	1350.0	NM_001285505	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.0	0.0	4.5	11.5	33.5	38.5
Merged-chr11-80040375-2	chr11	80039834	80040834	+	693.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	40657.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37858735-2	chr13	37858235	37859235	+	693.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	-29699.0	NR_033218	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51413579-2	chr13	51413079	51414079	+	693.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010101, intron 1 of 1)	intron (NM_010101, intron 1 of 1)	4961.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73245010-2	chr14	73244510	73245510	+	693.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 17 of 26)	intron (NM_009029, intron 17 of 26)	7119.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-35704320-2	chr15	35703820	35704820	+	693.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177151, intron 33 of 61)	MTB|LTR|ERVL-MaLR	-43273.0	NR_030606	100124469.0		NR_030606	ENSMUSG00000077890	Mir875	Mirn875|mir-875|mmu-mir-875	microRNA 875	ncRNA	0.0	3.0	2.5	0.0	4.0	1.0
Merged-chr12-98738349-2	chr12	98737849	98738849	+	693.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146199)	promoter-TSS (NM_001146199)	-944.0	NM_001146199	24000.0	Mm.4420	NM_011877	ENSMUSG00000021009	Ptpn21	PTPD1|PTPRL10	protein tyrosine phosphatase, non-receptor type 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-166738168-2	chr1	166737668	166738668	+	693.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56323.0	NM_001347135	240894.0	Mm.246610	NM_172844	ENSMUSG00000026560	Fmo9	4831428F09Rik	flavin containing monooxygenase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87724502-3	chr6	87724067	87725067	+	693.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-6302.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	10.0	14.0	4.0	6.0	28.0	25.0
Merged-chr7-73427273-2	chr7	73426773	73427773	+	693.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081345, exon 39 of 39)	3' UTR (NM_001081345, exon 39 of 39)	-51499.0	NR_040324	319783.0	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-7915998-2	chr17	7915498	7916498	+	693.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10002.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57720926-2	chr10	57720426	57721426	+	693.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008863, intron 4 of 5)	L1_Mus4|LINE|L1	-63997.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35596678-3	chr8	35596190	35597190	+	693.5	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-7670.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	43.0	23.0	33.5	7.0	44.5	69.0
Merged-chr16-93795015-2	chr16	93794515	93795515	+	693.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151466)	promoter-TSS (NR_151466)	-114.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20916369-2	chr9	20915869	20916869	+	693.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199432, intron 27 of 38)	intron (NM_001199432, intron 27 of 38)	-2205.0	NR_106049	102466802.0		NR_106049	ENSMUSG00000099147	Mir7081	Gm27904|mmu-mir-7081	microRNA 7081	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-141437723-2	chr2	141437223	141438223	+	693.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 5 of 18)	L1_Mus3|LINE|L1	-766247.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141631214-2	chr7	141630714	141631714	+	693.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357068, intron 21 of 21)	intron (NM_001357068, intron 21 of 21)	10513.0	NR_106030	102466798.0		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-44551180-2	chr5	44550680	44551680	+	693.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359071, intron 2 of 7)	intron (NM_001359071, intron 2 of 7)	248566.0	NM_001347349	16826.0	Mm.25785	NM_010698	ENSMUSG00000039706	Ldb2	AI035351|AW146358|CLIM1|CLP-36|Ldb3	LIM domain binding 2	protein-coding	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45724518-2	chr7	45724018	45725018	+	693.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027055)	TTS (NM_027055)	1298.0	NM_027055	69363.0	Mm.45607	NM_027055	ENSMUSG00000070563	Spaca4	1700008E09Rik|AV043694|Samp14	sperm acrosome associated 4	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr9-16212479-2	chr9	16211979	16212979	+	693.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	(CATG)n|Simple_repeat|Simple_repeat	165752.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127554634-2	chr3	127554134	127555134	+	693.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_197997, intron 1 of 25)	B1_Mur2|SINE|Alu	1145.0	NM_197997	71643.0	Mm.274884	NM_197997	ENSMUSG00000051278	Zgrf1	4930422G04Rik|AI448607	zinc finger, GRF-type containing 1	protein-coding	2.0	5.5	5.5	1.5	0.0	4.0
Merged-chr7-132713155-2	chr7	132712655	132713655	+	693.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175268, exon 5 of 5)	3' UTR (NM_175268, exon 5 of 5)	63761.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-115587131-2	chr10	115586631	115587631	+	693.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010195, intron 1 of 17)	intron (NM_010195, intron 1 of 17)	649.0	NM_010195	14160.0	Mm.42103	NM_010195	ENSMUSG00000020140	Lgr5	FEX|Gpr49	leucine rich repeat containing G protein coupled receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34876789-2	chr8	34876270	34877270	+	693.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 5 of 26)	MTE2a|LTR|ERVL-MaLR	69160.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	1.5	10.0	7.0	9.0	16.5	23.0
Merged-chr11-54995930-2	chr11	54995430	54996430	+	693.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 14 of 24)	intron (NR_138556, intron 14 of 24)	-32990.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105621500-2	chr8	105621000	105622000	+	693.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081241, intron 20 of 21)	intron (NM_001081241, intron 20 of 21)	6034.0	NR_035492	100316712.0		NR_035492	ENSMUSG00000089432	Mir1966	mir-1966|mmu-mir-1966	microRNA 1966	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103343858-2	chr11	103343358	103344358	+	693.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045346)	promoter-TSS (NR_045346)	844.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	3.0	0.0	1.0	2.5	2.0	0.0
Merged-chr3-90438684-3	chr3	90438172	90439172	+	693.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-5036.0	NM_178876	229543.0	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	4.5	47.0	13.0	8.5	18.0	13.0
Merged-chr18-61110216-2	chr18	61109716	61110716	+	693.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 3 of 21)	intron (NM_001037859, intron 3 of 21)	4644.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9671763-2	chr4	9671263	9672263	+	693.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2419.0	NM_001290367	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0.0	0.0	0.5	4.0	0.0	0.0
Merged-chr6-47785354-2	chr6	47784854	47785854	+	693.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18298.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	0.0	3.0	8.0	0.0	3.5	8.5
Merged-chr2-180261877-2	chr2	180261377	180262377	+	693.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145851, intron 5 of 9)	intron (NM_145851, intron 5 of 9)	4341.0	NR_037274	100526556.0		NR_037274	ENSMUSG00000092827	Mir3091	mir-3091|mmu-mir-3091	microRNA 3091	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-140577607-4	chr6	140577097	140578097	+	693.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144920, intron 22 of 30)	intron (NM_144920, intron 22 of 30)	-45066.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11334239-2	chr2	11333739	11334739	+	693.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-5250.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66199156-2	chr14	66198656	66199656	+	693.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 2 of 30)	intron (NM_001162366, intron 2 of 30)	14668.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32144127-2	chr16	32143627	32144627	+	693.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347182, exon 2 of 2)	exon (NM_001347182, exon 2 of 2)	21467.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152400007-2	chr1	152399507	152400507	+	693.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177756, exon 1 of 12)	5' UTR (NM_177756, exon 1 of 12)	140.0	NM_177756	269132.0	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98938769-2	chr11	98938269	98939269	+	693.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177303)	promoter-TSS (NM_001177303)	-942.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-25545930-2	chr19	25545430	25546430	+	693.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_015826, exon 3 of 5)	exon (NM_015826, exon 3 of 5)	40224.0	NM_015826	50796.0	Mm.391208	NM_015826	ENSMUSG00000024837	Dmrt1	-	doublesex and mab-3 related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-133652307-2	chr3	133651807	133652807	+	693.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107917.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81281444-2	chr7	81280944	81281944	+	693.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 2 of 21)	intron (NM_008803, intron 2 of 21)	63790.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-68881435-4	chr8	68880907	68881907	+	693.458374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008509, intron 1 of 9)	CpG	852.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	31.5	98.5	79.0	10.5	53.0	51.5
Merged-chr9-44322392-3	chr9	44321893	44322893	+	693.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2111.0	NM_027909	71764.0	Mm.491174	NM_027909	ENSMUSG00000032120	C2cd2l	1300006O23Rik|Tmem24	C2 calcium-dependent domain containing 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27753494-3	chr2	27753055	27754055	+	693.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 6 of 9)	intron (NM_001290481, intron 6 of 9)	42972.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119259167-2	chr11	119258674	119259674	+	693.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175430, intron 16 of 18)	B4|SINE|B4	-8789.0	NM_001159324	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	34.0	72.0	89.5	25.0	94.0	84.5
Merged-chr7-28818165-2	chr7	28817665	28818665	+	693.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_177301, intron 6 of 12)	intron (NM_177301, intron 6 of 12)	-7173.0	NM_016772	51798.0	Mm.291776	NM_016772	ENSMUSG00000053898	Ech1	AA617331	enoyl coenzyme A hydratase 1, peroxisomal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167927847-2	chr2	167927347	167928347	+	693.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-4480.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122978407-2	chr8	122977907	122978907	+	693.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	URR1A|DNA|hAT-Charlie	63877.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116445142-2	chr11	116444642	116445642	+	693.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033267, exon 10 of 14)	exon (NM_001033267, exon 10 of 14)	9205.0	NM_001033267	217341.0	Mm.387352	NM_001033267	ENSMUSG00000070331	Qrich2	Gm66	glutamine rich 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54626650-3	chr11	54626154	54627154	+	693.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175258, exon 11 of 28)	exon (NM_175258, exon 11 of 28)	30508.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-56902952-3	chr1	56902434	56903434	+	693.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358580, intron 4 of 11)	intron (NM_001358580, intron 4 of 11)	68400.0	NM_139146	212712.0	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding	3.0	10.5	2.0	7.0	10.0	2.0
Merged-chr11-88145922-3	chr11	88145421	88146421	+	693.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198013, intron 1 of 10)	intron (NM_198013, intron 1 of 10)	-23644.0	NM_001172099	103841.0	Mm.374846	NM_198013	ENSMUSG00000018378	Cuedc1	AI841487|C330016O16Rik	CUE domain containing 1	protein-coding	3.0	7.0	0.0	0.0	1.0	1.5
Merged-chr12-28676207-4	chr12	28675754	28676754	+	693.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134052, intron 1 of 3)	intron (NM_134052, intron 1 of 3)	1047.0	NM_134052	104923.0	Mm.291504	NM_134052	ENSMUSG00000020629	Adi1	AL024210|Fe-ARD|MTCBP-1|Ni-ARD	acireductone dioxygenase 1	protein-coding	4.0	35.5	27.5	26.0	20.0	42.0
Merged-chr1-157386697-1	chr1	157386197	157387197	+	693.333313	f0_balb.idr	intron (NM_177644, intron 1 of 17)	intron (NM_177644, intron 1 of 17)	-25655.0	NR_027984	69953.0	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	13.5	25.0	13.0	12.0	25.0	10.5
Merged-chr10-34176258-3	chr10	34175785	34176785	+	693.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 2 of 5)	intron (NM_172508, intron 2 of 5)	31266.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4401314-3	chr2	4400834	4401834	+	693.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001177843, exon 1 of 24)	5' UTR (NM_001177843, exon 1 of 24)	358.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-11758635-2	chr18	11758135	11759135	+	693.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80639.0	NM_001146287	63955.0	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	0.0	3.5	0.5	0.0	0.0	0.0
Merged-chr10-24809028-2	chr10	24808527	24809527	+	693.25	f0_c57.idr|f1_c57bl6.idr	intron (NM_134005, intron 7 of 24)	RSINE1|SINE|B4	27168.0	NM_134005	209558.0	Mm.338425	NM_134005	ENSMUSG00000019989	Enpp3	AI876438|CD203c	ectonucleotide pyrophosphatase/phosphodiesterase 3	protein-coding	1.0	2.0	2.0	6.0	0.0	0.0
Merged-chr17-56301667-2	chr17	56301167	56302167	+	693.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-1381.0	NM_029799	76920.0	Mm.329132	NM_029799	ENSMUSG00000073380	Arrdc5	1700013E09Rik	arrestin domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54825399-2	chr12	54824899	54825899	+	693.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-29737.0	NM_026998	72183.0	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44937216-2	chr13	44936716	44937716	+	693.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_025772, intron 7 of 9)	MTD|LTR|ERVL-MaLR	64880.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53304800-2	chr19	53304258	53305258	+	693.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-5748.0	NM_001008542	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	2.0	1.5	0.0	0.0	0.0	3.0
Merged-chr8-120592541-2	chr8	120592041	120593041	+	693.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3466.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-45254997-3	chr3	45254494	45255494	+	693.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	123266.0	NR_045172	72511.0	Mm.140700	NR_045172	ENSMUSG00000097040	2610316D01Rik	-	RIKEN cDNA 2610316D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71610231-3	chr8	71609738	71610738	+	693.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146211)	promoter-TSS (NM_146211)	-786.0	NM_146211	234407.0	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	101.0	158.5	158.5	118.5	233.5	232.0
Merged-chr4-8429213-3	chr4	8428711	8429711	+	693.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106433.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	1.5	5.0	12.5	0.0	2.5	1.5
Merged-chr15-83140680-2	chr15	83140180	83141180	+	693.1999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 1 of 7)	intron (NM_001347082, intron 1 of 7)	8698.0	NM_178627	73826.0	Mm.23758	NM_178627	ENSMUSG00000041815	Poldip3	1110008P04Rik|AA408269|AL022852|C77954|PDIP46|SKAR|mKIAA1649	polymerase (DNA-directed), delta interacting protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122682643-3	chr8	122682125	122683125	+	693.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009824, intron 1 of 11)	intron (NM_009824, intron 1 of 11)	-4450.0	NM_177289	12398.0	Mm.194339	NM_009824	ENSMUSG00000006362	Cbfa2t3	A630044F12Rik|AI465270|AW229127|Cbfa2t3h|ETO-2|Eto2|MTGR2	core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	protein-coding	5.0	10.5	5.5	3.0	0.0	0.5
Merged-chr5-135133996-2	chr5	135133496	135134496	+	693.166687	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152880, exon 14 of 17)	non-coding (NR_152880, exon 14 of 17)	-15715.0	NM_013763	27368.0	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60747769-2	chr2	60747269	60748269	+	693.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25166.0	NM_001159564	16420.0	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-147014431-3	chr2	147013921	147014921	+	693.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356402, intron 1 of 28)	B1_Mur1|SINE|Alu	1422.0	NM_001356402	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	15.0	57.5	23.0	32.5	25.0	29.5
Merged-chr4-132592541-2	chr4	132592041	132593041	+	693.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	28474.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	37.5	69.0	46.5	42.0	64.0	42.0
Merged-chr11-5519540-2	chr11	5519048	5520048	+	693.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-1093.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	1.5	0.5	1.5	0.0	0.0	0.0
Merged-chr1-51502313-4	chr1	51501736	51502736	+	693.137512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23837.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111053468-3	chr9	111053064	111054064	+	693.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	3680.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59807841-2	chr4	59807341	59808341	+	693.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	MLT1F|LTR|ERVL-MaLR	2191.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8442239-2	chr15	8441739	8442739	+	693.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_201232, intron 1 of 45)	intron (NM_201232, intron 1 of 45)	2224.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-46314676-4	chr9	46314181	46315181	+	693.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183104, intron 3 of 12)	intron (NM_183104, intron 3 of 12)	5305.0	NM_183104	74361.0	Mm.159169	NM_183104	ENSMUSG00000056617	4931429L15Rik	-	RIKEN cDNA 4931429L15 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60351977-3	chr10	60351492	60352492	+	693.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028732, intron 1 of 6)	intron (NM_028732, intron 1 of 6)	5141.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116099763-3	chr11	116099121	116100121	+	693.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10614.0	NM_001205081	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59009902-3	chr4	59009392	59010392	+	693.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033165, intron 1 of 3)	PB1D7|SINE|Alu	6699.0	NM_001033165	72429.0	Mm.317801	NM_001033165	ENSMUSG00000070972	Dnajc25	2010109C08Rik|2010203O07Rik	DnaJ heat shock protein family (Hsp40) member C25	protein-coding	1.5	3.0	1.0	0.0	1.5	0.0
Merged-chr5-145185371-4	chr5	145184937	145185937	+	693.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020582, intron 2 of 3)	RLTR11B|LTR|ERVK	6155.0	NM_020582	57423.0	Mm.133551	NM_020582	ENSMUSG00000038690	Atp5j2	1110019H14Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2	protein-coding	1.0	2.5	3.0	2.0	3.0	14.0
Merged-chr13-105588812-2	chr13	105588312	105589312	+	693.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL1|LINE|L1	145119.0	NM_008308	15550.0	Mm.4716	NM_008308	ENSMUSG00000021721	Htr1a	Gpcr18	5-hydroxytryptamine (serotonin) receptor 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80697447-2	chr10	80696947	80697947	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	4373.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87772526-2	chr11	87771948	87772948	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172449, intron 16 of 31)	intron (NM_172449, intron 16 of 31)	11907.0	NM_172449	207777.0	Mm.342019	NM_172449	ENSMUSG00000034156	Tspoap1	Bzrap1|D230016K05|PRAX-1|mKIAA0612	TSPO associated protein 1	protein-coding	0.0	0.0	0.5	2.0	0.0	0.0
Merged-chr8-105304824-2	chr8	105304324	105305324	+	693.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172760)	promoter-TSS (NM_172760)	-777.0	NM_172760	234683.0	Mm.237966	NM_172760	ENSMUSG00000014791	Elmo3	9930107J06|BC058752|CED-12|Ced12	engulfment and cell motility 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96596840-2	chr15	96596340	96597340	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166456, intron 4 of 15)	intron (NM_001166456, intron 4 of 15)	45122.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-112392917-1	chr2	112392417	112393417	+	693.0	f0_balb.idr	intron (NM_024254, intron 1 of 9)	intron (NM_024254, intron 1 of 9)	13706.0	NM_024254	72425.0	Mm.425091	NM_024254	ENSMUSG00000027132	Katnbl1	2410042D21Rik|AA166487|AA473307|AI467442	katanin p80 subunit B like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141069846-2	chr4	141069346	141070346	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_149724, intron 7 of 8)	intron (NR_149724, intron 7 of 8)	8511.0	NR_149724	66147.0	Mm.21187	NM_025383	ENSMUSG00000028923	Necap2	1110005F07Rik|AA409105|C78898|NECAP-2	NECAP endocytosis associated 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-119069524-2	chr10	119069024	119070024	+	693.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19025.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-112003596-2	chr10	112003096	112004096	+	693.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-6332.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53904892-1	chr18	53904392	53905392	+	693.0	f1_balb.idr	intron (NM_152809, intron 3 of 12)	intron (NM_152809, intron 3 of 12)	42779.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	1.0	6.5	6.5	9.5	12.5	11.0
Merged-chr11-101086075-2	chr11	101085575	101086575	+	693.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001305982, exon 9 of 10)	exon (NM_001305982, exon 9 of 10)	-1215.0	NM_011550	21428.0	Mm.628	NM_011550	ENSMUSG00000017801	Mlx	Tcfl4|Tf4|bHLHd13	MAX-like protein X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134467892-2	chr4	134467363	134468363	+	693.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019641)	promoter-TSS (NM_019641)	-457.0	NM_019641	16765.0	Mm.378957	NM_019641	ENSMUSG00000028832	Stmn1	19k|Lag|Lap18|Op18|P18|P19|Pig|Pp17|Pp18|Pp19|Pr22|Smn	stathmin 1	protein-coding	0.0	3.5	6.0	3.5	5.0	9.0
Merged-chr8-71461922-1	chr8	71461422	71462422	+	693.0	f1_c57bl6.idr	exon (NM_022419, exon 2 of 5)	exon (NM_022419, exon 2 of 5)	1735.0	NM_022419	64296.0	Mm.276383	NM_022419	ENSMUSG00000007950	Abhd8	0910001L24Rik|AB030191	abhydrolase domain containing 8	protein-coding	1.0	3.5	0.0	0.0	0.0	0.0
Merged-chr2-26470974-2	chr2	26470474	26471474	+	693.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105962)	promoter-TSS (NR_105962)	-855.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114979867-2	chr5	114979367	114980367	+	693.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-8805.0	NM_009327	21405.0	Mm.332607	NM_009327	ENSMUSG00000029556	Hnf1a	AI323641|HNF1|HNF1-alpha|HNF1[a]|Hnf-1|Hnf1alpha|LFB1|Tcf-1|Tcf1	HNF1 homeobox A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75004675-1	chr18	75004175	75005175	+	693.0	f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1164.0	NM_001358306	407819.0	Mm.29866	NM_001001181	ENSMUSG00000036299	BC031181	-	cDNA sequence BC031181	protein-coding	7.5	11.0	28.0	9.0	19.0	19.5
Merged-chr2-174021953-2	chr2	174021453	174022453	+	693.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55098.0	NM_172675	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42171273-1	chr19	42170773	42171773	+	693.0	f0_balb.idr	intron (NM_177319, intron 1 of 12)	intron (NM_177319, intron 1 of 12)	706.0	NM_001164531	319740.0	Mm.287359	NM_177319	ENSMUSG00000018820	Zfyve27	2210011N02Rik|9530077C24Rik|AI426636|AI593546|AI835681	zinc finger, FYVE domain containing 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8918741-1	chr4	8918241	8919241	+	693.0	f1_balb.idr	Intergenic	Intergenic	167417.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	2.5	3.5	5.5	0.5	2.0	1.5
Merged-chr11-98201105-2	chr11	98200605	98201605	+	693.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2200.0	NM_001109628	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12139329-2	chr15	12138829	12139829	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358823, intron 4 of 18)	intron (NM_001358823, intron 4 of 18)	21478.0	NM_001358823	22763.0	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73941387-2	chr17	73940887	73941887	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 2 of 35)	intron (NM_011723, intron 2 of 35)	8809.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60606632-2	chr13	60606132	60607132	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	4421.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	3.5	15.0	0.0	3.5	15.5	0.5
Merged-chr15-6591623-1	chr15	6591123	6592123	+	693.0	f0_balb.idr	intron (NM_011815, intron 1 of 17)	intron (NM_011815, intron 1 of 17)	11776.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30284200-3	chr16	30283718	30284718	+	693.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028973)	promoter-TSS (NM_028973)	-964.0	NM_028973	74488.0	Mm.290677	NM_028973	ENSMUSG00000052316	Lrrc15	5430427N11Rik|LIB	leucine rich repeat containing 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-146484400-2	chr4	146483900	146484900	+	693.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-17600.0	NM_001243138	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37531234-2	chr13	37530734	37531734	+	693.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	185889.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.0	0.0	3.0	1.0	0.0	0.0
Merged-chr12-36036250-2	chr12	36035750	36036750	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025359, intron 1 of 5)	L2|LINE|L2	6228.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	0.5	2.0	2.5	0.5	3.0	3.5
Merged-chr10-88707967-2	chr10	88707467	88708467	+	693.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	23134.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129296117-2	chr2	129295617	129296617	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181589, intron 2 of 8)	intron (NM_181589, intron 2 of 8)	1095.0	NM_181589	70466.0	Mm.45785	NM_181589	ENSMUSG00000048327	Ckap2l	2010016H04Rik|2610318C08Rik|AV070319|radmis|rdm	cytoskeleton associated protein 2-like	protein-coding	0.0	0.0	1.0	1.0	8.5	4.5
Merged-chr5-65935700-2	chr5	65935200	65936200	+	693.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31424.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22700824-2	chr8	22700325	22701325	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159774, intron 2 of 21)	intron (NM_001159774, intron 2 of 21)	5758.0	NM_010546	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	1.5	6.0	5.0	11.5	3.5	4.5
Merged-chr10-67202282-3	chr10	67201776	67202776	+	693.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 3 of 25)	MLT2D|LTR|ERVL	16526.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23307782-2	chr11	23307282	23308282	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190401, intron 1 of 79)	intron (NM_001190401, intron 1 of 79)	887.0	NM_001190401	17847.0	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77941675-2	chr18	77941175	77942175	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195633, intron 1 of 43)	intron (NM_001195633, intron 1 of 43)	3208.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3510145-1	chr4	3509645	3510645	+	693.0	f1_balb.idr	Intergenic	Intergenic	-26945.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	5.0	4.0	8.5	10.5	14.0	8.0
Merged-chr15-76782890-1	chr15	76782390	76783390	+	693.0	f0_balb.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	35280.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	3.5	9.5	12.5	3.0	5.5	10.5
Merged-chr10-59943749-3	chr10	59943243	59944243	+	693.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	8027.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27711759-2	chr2	27711259	27712259	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	1176.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44523128-2	chr11	44522628	44523628	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 1 of 5)	intron (NM_001166553, intron 1 of 5)	3751.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	7.0	8.5	5.0	9.5	9.0	5.0
Merged-chr10-112271044-2	chr10	112270544	112271544	+	693.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359752)	promoter-TSS (NM_001359752)	-77.0	NM_001359752	268345.0	Mm.336242	NM_001025581	ENSMUSG00000035681	Kcnc2	AW047325|B230117I07|KShIIIA|Kv3.2	potassium voltage gated channel, Shaw-related subfamily, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20175417-2	chr11	20174917	20175917	+	693.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25995.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121389959-1	chr10	121389459	121390459	+	693.0	f1_balb.idr	intron (NM_029364, intron 10 of 13)	intron (NM_029364, intron 10 of 13)	24869.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0.0	0.0	5.0	1.0	23.0	2.0
Merged-chr10-17949364-2	chr10	17948864	17949864	+	693.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1297.0	NM_001033432	380629.0	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59655635-2	chr15	59655135	59656135	+	693.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_144549, exon 3 of 3)	3' UTR (NM_144549, exon 3 of 3)	6981.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-77467026-2	chr8	77466526	77467526	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 1 of 22)	intron (NM_030113, intron 1 of 22)	-50030.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180343649-2	chr1	180343149	180344149	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-13100.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83723545-1	chr8	83723045	83724045	+	693.0	f0_balb.idr	TTS (NM_197982)	TTS (NM_197982)	439.0	NR_106188	102465897.0		NR_106188	ENSMUSG00000098465	Mir1668	Gm27590|mmu-mir-1668	microRNA 1668	ncRNA	0.0	0.0	4.5	3.0	0.0	0.0
Merged-chr9-103209528-1	chr9	103209028	103210028	+	693.0	f1_c57bl6.idr	intron (NM_133977, intron 16 of 16)	intron (NM_133977, intron 16 of 16)	-7463.0	NM_009275	20818.0	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	6.5	5.0	5.0	4.5	2.5	0.5
Merged-chr4-152103316-2	chr4	152102816	152103816	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285999, intron 3 of 20)	intron (NM_001285999, intron 3 of 20)	6597.0	NM_001285999	269608.0	Mm.332102	NM_001004156	ENSMUSG00000039713	Plekhg5	BC023181|Syx	pleckstrin homology domain containing, family G (with RhoGef domain) member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13017072-2	chr10	13016572	13017572	+	693.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	8622.0	NM_175102	66125.0	Mm.29743	NM_175102	ENSMUSG00000078348	Sf3b5	10kDa|1110005L13Rik|AU043053|Sf3b10	splicing factor 3b, subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134249806-1	chr6	134249306	134250306	+	693.0	f1_balb.idr	intron (NM_001303102, intron 6 of 8)	intron (NM_001303102, intron 6 of 8)	-146523.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	1.0	4.0	1.5	9.5	0.5	2.5
Merged-chr14-77912308-2	chr14	77911808	77912808	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029495, intron 1 of 11)	MIRc|SINE|MIR	8069.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125601241-2	chr6	125600741	125601741	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 13 of 51)	intron (NM_011708, intron 13 of 51)	48293.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-49176232-2	chr6	49175731	49176731	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023670, intron 2 of 14)	intron (NM_023670, intron 2 of 14)	38723.0	NM_023670	140488.0	Mm.281018	NM_023670	ENSMUSG00000029814	Igf2bp3	2610101N11Rik|AA522010|AL022933|AU045931|IMP-3|IMP3|Koc13|Neilsen|mimp3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding	0.0	6.5	0.0	0.0	0.0	0.0
Merged-chr14-41017656-3	chr14	41017153	41018153	+	692.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Kanga1|DNA|TcMar-Tc2	-3820.0	NM_001316737	70564.0	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116665211-3	chr4	116664724	116665724	+	692.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13550.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99420809-2	chr15	99420309	99421309	+	692.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27590.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	13.5	7.0	12.5	10.0	12.0	8.5
Merged-chr5-102451209-4	chr5	102450688	102451688	+	692.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30203.0	NM_146161	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146804532-4	chr5	146804039	146805039	+	692.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-9583.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	9.0	19.5	20.5	10.5	21.5	6.0
Merged-chr12-100528503-3	chr12	100528016	100529016	+	692.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7694.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103011323-2	chr14	103010823	103011823	+	692.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 2 of 2)	intron (NR_045657, intron 2 of 2)	22480.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-71012255-4	chr12	71011758	71012758	+	692.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045056, intron 2 of 2)	B4A|SINE|B4	3565.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	1.5	5.5	1.5	2.0	9.5	5.5
Merged-chr15-59046947-3	chr15	59046432	59047432	+	692.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	35094.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-26476122-3	chr14	26475616	26476616	+	692.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 2 of 22)	intron (NM_001310445, intron 2 of 22)	58508.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-67608375-3	chr11	67607941	67608941	+	692.761108	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109657, intron 2 of 13)	intron (NM_001109657, intron 2 of 13)	11886.0	NM_001277079	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.0	1.0	0.0	0.0	1.0	0.5
Merged-chr5-100579004-2	chr5	100578504	100579504	+	692.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6799.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111301350-2	chr8	111300850	111301850	+	692.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1128.0	NM_146218	234736.0	Mm.334816	NM_146218	ENSMUSG00000033596	Rfwd3	BC027246	ring finger and WD repeat domain 3	protein-coding	1.0	13.0	3.5	1.0	13.0	3.5
Merged-chr19-46303871-2	chr19	46303370	46304370	+	692.75	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001177369)	promoter-TSS (NM_001177369)	-867.0	NM_001177369	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75465149-4	chr18	75464669	75465669	+	692.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 10 of 11)	intron (NM_201354, intron 10 of 11)	-49476.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128008426-3	chr10	128007927	128008927	+	692.711121	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013786)	promoter-TSS (NM_013786)	-816.0	NM_001359377	27400.0	Mm.26719	NM_013786	ENSMUSG00000025396	Hsd17b6	17betaHSD9|Hsd17b9|Rdh8	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-123364448-3	chr7	123364059	123365059	+	692.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	5356.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144232556-3	chr3	144232076	144233076	+	692.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27321.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-57868880-3	chr1	57868408	57869408	+	692.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164566, intron 2 of 11)	intron (NM_001164566, intron 2 of 11)	23337.0	NM_001164566	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	1.5	0.0	1.0	0.0	0.0	5.0
Merged-chr2-70967853-1	chr2	70967353	70968353	+	692.666687	f0_c57.idr	intron (NM_145524, intron 7 of 9)	B4A|SINE|B4	50521.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33847646-3	chr2	33847154	33848154	+	692.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 2 of 9)	L1MB7|LINE|L1	40292.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-16253584-3	chr2	16253092	16254092	+	692.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310455, intron 38 of 38)	L1_Mus2|LINE|L1	-102712.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-52103016-1	chr14	52102516	52103516	+	692.666687	f1_c57bl6.idr	intron (NM_001360183, intron 1 of 8)	intron (NM_001360183, intron 1 of 8)	1005.0	NM_001360178	15381.0	Mm.427321	NM_016884	ENSMUSG00000060373	Hnrnpc	AL022939|D14Wsu171e|Hnrpc|Hnrpc1|Hnrpc2|hnRNPC1|hnRNPC2|hnrnp-C	heterogeneous nuclear ribonucleoprotein C	protein-coding	71.0	147.0	76.5	44.5	91.0	74.0
Merged-chr7-66287719-3	chr7	66287223	66288223	+	692.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 19 of 33)	intron (NM_146191, intron 19 of 33)	94001.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47699855-3	chr9	47699255	47700255	+	692.655579	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	118453.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	2.0	26.0	11.0	3.0	30.5	12.0
Merged-chr11-46799044-3	chr11	46798547	46799547	+	692.650024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-11752.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69982001-2	chr11	69981501	69982501	+	692.625	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018740)	promoter-TSS (NM_018740)	-766.0	NM_018740	54351.0	Mm.13430	NM_018740	ENSMUSG00000018565	Elp5	Derp6|Rai12	elongator acetyltransferase complex subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6519634-1	chr15	6519134	6520134	+	692.599976	f0_balb.idr	Intergenic	Intergenic	-60213.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-63115937-2	chr1	63115437	63116437	+	692.599976	f1_balb.idr|f1_c57bl6.idr	intron (NR_045914, intron 1 of 3)	(TTTC)n|Simple_repeat|Simple_repeat	1197.0	NR_045914	100380944.0	Mm.392955	NR_045914	ENSMUSG00000084799	Ino80dos	Gm11602	INO80 complex subunit D, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133847388-3	chr4	133846939	133847939	+	692.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001285506, exon 21 of 21)	3' UTR (NM_001285506, exon 21 of 21)	27292.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	62.0	113.0	115.0	0.0	9.0	3.5
Merged-chr10-17919210-3	chr10	17918712	17919712	+	692.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033432, intron 1 of 3)	intron (NM_001033432, intron 1 of 3)	28855.0	NM_001033432	380629.0	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	0.0	0.0	1.0	2.0	0.5	0.0
Merged-chr8-85085838-3	chr8	85085357	85086357	+	692.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010764, intron 4 of 23)	intron (NM_010764, intron 4 of 23)	2588.0	NM_010764	17159.0	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	2.5	2.0	5.0	5.0	7.0	7.5
Merged-chr9-14188084-3	chr9	14187481	14188481	+	692.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88320.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-169304246-2	chr2	169303746	169304746	+	692.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	325977.0	NR_040326	75508.0	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94136660-2	chr11	94136160	94137160	+	692.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-74794.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67016825-2	chr10	67016325	67017325	+	692.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 6 of 7)	intron (NM_178606, intron 6 of 7)	11750.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31274164-2	chr16	31273664	31274664	+	692.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025800, intron 1 of 5)	L1MC5a|LINE|L1	1113.0	NM_025800	66849.0	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|I-2|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97107626-2	chr7	97107126	97108126	+	692.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	25875.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.0	3.0	2.0	3.5	7.0	2.0
Merged-chr9-118571406-2	chr9	118570906	118571906	+	692.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018748, intron 21 of 23)	intron (NM_018748, intron 21 of 23)	-35303.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11556335-2	chr4	11555835	11556835	+	692.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2585.0	NM_001039556	623474.0	Mm.491200	NM_177285	ENSMUSG00000078773	Rad54b	E130016E03Rik	RAD54 homolog B (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73944541-2	chr17	73944041	73945041	+	692.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 1 of 35)	intron (NM_011723, intron 1 of 35)	5655.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37054242-2	chr9	37053742	37054742	+	692.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 2 of 12)	intron (NM_001029838, intron 2 of 12)	93080.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-49822502-2	chr6	49822002	49823002	+	692.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023456)	promoter-TSS (NM_023456)	-208.0	NM_023456	109648.0	Mm.154796	NM_023456	ENSMUSG00000029819	Npy	0710005A05Rik	neuropeptide Y	protein-coding	0.0	4.0	14.0	6.5	4.0	3.0
Merged-chr7-80075969-2	chr7	80075469	80076469	+	692.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045695)	promoter-TSS (NR_045695)	-712.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	29.5	50.5	32.0	13.0	21.0	22.5
Merged-chr17-6834401-2	chr17	6833901	6834901	+	692.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	-51621.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122620530-2	chr8	122620030	122621030	+	692.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001007462, intron 5 of 6)	intron (NM_001007462, intron 5 of 6)	1845.0	NR_105821	102466643.0		NR_105821	ENSMUSG00000098500	Mir6396	Gm27938|mmu-mir-6396	microRNA 6396	ncRNA	1.0	5.0	0.0	0.0	0.0	1.5
Merged-chr9-118760283-2	chr9	118759783	118760783	+	692.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	48591.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152802419-2	chr1	152801919	152802919	+	692.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 1 of 15)	RLTR17D_Mm|LTR|ERVK	2266.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59246770-2	chr2	59246270	59247270	+	692.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	Lx9|LINE|L1	85920.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-10031371-2	chr8	10030871	10031871	+	692.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347309, exon 4 of 6)	exon (NM_001347309, exon 4 of 6)	24738.0	NM_033622	24099.0	Mm.28835	NM_033622	ENSMUSG00000031497	Tnfsf13b	BAFF|BLyS|D8Ertd387e|TALL-1|TALL1|THANK|TNFSF20|Tnlg7a|zTNF4	tumor necrosis factor (ligand) superfamily, member 13b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35477263-2	chr18	35476763	35477763	+	692.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030749, intron 1 of 9)	intron (NM_030749, intron 1 of 9)	-7311.0	NM_001360814	81500.0	Mm.291482	NM_030749	ENSMUSG00000024357	Sil1	1810057E01Rik|AI042831|wz	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65783393-2	chr17	65782892	65783892	+	692.5	f0_balb.idr|f0_c57.idr	promoter-TSS (NR_104465)	promoter-TSS (NR_104465)	37.0	NR_104465	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	2.0	12.0	11.5	8.5	27.5	22.5
Merged-chr5-32869793-2	chr5	32869293	32870293	+	692.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025426, intron 5 of 42)	intron (NM_001025426, intron 5 of 42)	6072.0	NM_001170567	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81809527-2	chr15	81809027	81810027	+	692.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153484, intron 1 of 3)	intron (NM_153484, intron 1 of 3)	-1887.0	NM_017376	21685.0	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-70180866-2	chr10	70180366	70181366	+	692.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111121, intron 6 of 8)	intron (NM_001111121, intron 6 of 8)	-23798.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96605393-4	chr10	96604878	96605878	+	692.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11623.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27733361-2	chr2	27732861	27733861	+	692.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	22778.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87024272-2	chr11	87023772	87024772	+	692.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-30510.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12993347-2	chr17	12992847	12993847	+	692.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175394)	promoter-TSS (NM_175394)	-808.0	NM_175394	60532.0	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-129785656-1	chr5	129785156	129786156	+	692.5	f1_balb.idr	intron (NM_133900, intron 1 of 7)	B3|SINE|B2	1597.0	NM_133900	100678.0	Mm.271784	NM_133900	ENSMUSG00000029446	Psph	AI480570|PSP|PSPase	phosphoserine phosphatase	protein-coding	18.0	15.0	6.0	6.5	20.0	8.5
Merged-chr17-6737896-2	chr17	6737396	6738396	+	692.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009510)	TTS (NM_009510)	32066.0	NM_183368	83672.0	Mm.442201	NM_031395	ENSMUSG00000041831	Sytl3	A430092N21|Slp3|Slp3-a|Slp3-b|mFLJ00307	synaptotagmin-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30676843-2	chr5	30676343	30677343	+	692.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9957.0	NR_126074	12615.0	Mm.290563	NM_007681	ENSMUSG00000029177	Cenpa	Cenp-A	centromere protein A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24005995-2	chr17	24005550	24006550	+	692.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-7950.0	NM_133731	70835.0	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	4.0	26.0	8.5	12.5	13.5	8.5
Merged-chr17-76594551-2	chr17	76594051	76595051	+	692.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	733528.0	NR_033456	100043885.0	Mm.127562	NR_033456		Gm4710	-	predicted gene 4710	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-99230706-3	chr13	99230193	99231193	+	692.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 2 of 4)	intron (NM_001004149, intron 2 of 4)	45870.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84039147-2	chr8	84038650	84039650	+	692.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016671, intron 6 of 13)	intron (NM_016671, intron 6 of 13)	3425.0	NM_016671	50931.0	Mm.38386	NM_016671	ENSMUSG00000005465	Il27ra	CRL1|IL-27R|Tccr|WSX-1|Wsx1|zcytor1	interleukin 27 receptor, alpha	protein-coding	3.0	3.5	2.5	4.0	3.5	0.0
Merged-chr6-116647879-2	chr6	116647379	116648379	+	692.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178045, intron 3 of 10)	intron (NM_178045, intron 3 of 10)	-1832.0	NR_106010	102466793.0		NR_106010	ENSMUSG00000098334	Mir7043	Gm27776|mmu-mir-7043	microRNA 7043	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-36554449-2	chr19	36553942	36554942	+	692.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172637)	promoter-TSS (NM_172637)	-197.0	NM_001163471	226098.0	Mm.61107	NM_172637	ENSMUSG00000041180	Hectd2	4921524L07|A630025O09Rik|AW212605	HECT domain E3 ubiquitin protein ligase 2	protein-coding	1.5	8.0	13.0	0.5	4.0	6.5
Merged-chr16-87369350-2	chr16	87368850	87369850	+	692.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001159331)	TTS (NM_001159331)	15165.0	NM_026366	67768.0	Mm.296532	NM_026366	ENSMUSG00000044442	N6amt1	5830445C04Rik|Hemk2|Pred28	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126919456-5	chr8	126918961	126919961	+	692.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26460.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59396226-2	chr2	59395726	59396726	+	692.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9544.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92353185-2	chr5	92352683	92353683	+	692.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	RLTR13D2|LTR|ERVK	-4294.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	78.5	159.0	134.0	84.5	142.0	104.0
Merged-chr1-167415060-4	chr1	167414544	167415544	+	692.479187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21247.0	NM_025569	66447.0	Mm.218286	NM_025569	ENSMUSG00000026688	Mgst3	2010012L10Rik|2010306B17Rik|2700004G04Rik|AA516734|GST-III	microsomal glutathione S-transferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-40064692-3	chr1	40064198	40065198	+	692.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20016.0	NM_010555	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-88805008-3	chr18	88804516	88805516	+	692.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B3|LTR|ERVL	89191.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16122335-3	chr1	16121830	16122830	+	692.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133832, intron 2 of 5)	intron (NM_133832, intron 2 of 5)	16448.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0.0	6.5	1.0	10.5	18.5	4.0
Merged-chr15-51955824-4	chr15	51955331	51956331	+	692.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35929.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73616280-2	chr7	73615780	73616780	+	692.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-57885.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-51705755-4	chr12	51705251	51706251	+	692.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001329698, intron 1 of 5)	intron (NM_001329698, intron 1 of 5)	-13837.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118741841-3	chr7	118741337	118742337	+	692.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027815, intron 1 of 30)	intron (NM_027815, intron 1 of 30)	1566.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	64.0	170.0	188.5	42.5	80.0	110.5
Merged-chr1-172481323-4	chr1	172480808	172481808	+	692.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145800)	promoter-TSS (NM_001145800)	-905.0	NM_001145800	93842.0	Mm.214530	NM_033608	ENSMUSG00000037995	Igsf9	644ETD8|Dasm1|Kiaa1355-hp|NRT1|Ncaml|mKIAA1355	immunoglobulin superfamily, member 9	protein-coding	7.5	24.5	2.0	1.0	12.0	5.0
Merged-chr14-66261163-3	chr14	66260673	66261673	+	692.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	19879.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69405485-2	chr11	69404985	69405985	+	692.3000490000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_001017426, exon 11 of 23)	exon (NM_001017426, exon 11 of 23)	-7251.0	NM_025915	67020.0	Mm.390406	NM_025915	ENSMUSG00000045377	Tmem88	2600017H02Rik	transmembrane protein 88	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114305651-4	chr7	114305162	114306162	+	692.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29546.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	2.5	0.0	0.0	0.0	0.0	2.5
Merged-chr6-29773248-3	chr6	29772752	29773752	+	692.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	intron (NM_001171000, intron 1 of 16)	4809.0	NM_001171000	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95497843-3	chr3	95497338	95498338	+	692.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009709)	TTS (NM_009709)	-1372.0	NM_007802	13038.0	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116197696-3	chr11	116197162	116198162	+	692.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271898, intron 2 of 13)	intron (NM_001271898, intron 2 of 13)	-1193.0	NM_027107	69535.0	Mm.390347	NM_027107	ENSMUSG00000020778	Ten1	2310004N24Rik	TEN1 telomerase capping complex subunit	protein-coding	13.5	26.0	27.0	31.0	91.0	56.0
Merged-chr19-29400717-2	chr19	29400174	29401174	+	692.208374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10245.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155179230-4	chr4	155178752	155179752	+	692.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	43283.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61497806-4	chr11	61497304	61498304	+	692.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-3538.0	NM_001291034	23939.0	Mm.38172	NM_011841	ENSMUSG00000001034	Mapk7	BMK-1|BMK1|ERK-5|ERK5|Erk5-T|PRKM7|b2b2346Clo	mitogen-activated protein kinase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75415292-4	chr11	75414700	75415700	+	692.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011340, intron 4 of 7)	intron (NM_011340, intron 4 of 7)	7423.0	NM_011340	20317.0	Mm.2044	NM_011340	ENSMUSG00000000753	Serpinf1	AI195227|EPC-1|Pedf|Pedfl|Sdf3	serine (or cysteine) peptidase inhibitor, clade F, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111894235-3	chr12	111893736	111894736	+	692.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011625, intron 1 of 16)	L2c|LINE|L2	13819.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93332348-3	chr10	93331869	93332869	+	692.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-3842.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	0.0	1.5	0.0	3.5	1.0	3.0
Merged-chr10-117640075-2	chr10	117639575	117640575	+	692.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_027468, intron 2 of 8)	intron (NM_027468, intron 2 of 8)	10575.0	NM_027468	70574.0	Mm.339332	NM_027468	ENSMUSG00000020183	Cpm	1110060I01Rik|5730456K23Rik|AA589379|E030045M14Rik	carboxypeptidase M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38248034-2	chr18	38247534	38248534	+	692.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_015475, intron 1 of 3)	L2c|LINE|L2	2164.0	NR_015475	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	8.0	23.5	18.5	12.5	27.5	17.0
Merged-chr16-92411583-2	chr16	92411092	92412092	+	692.166626	f0_balb.idr|f1_balb.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-11514.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	1.5	3.0	6.0	7.0	0.5	7.5
Merged-chr5-135107997-2	chr5	135107497	135108497	+	692.125	f1_balb.idr|f1_c57bl6.idr	intron (NR_152882, intron 1 of 16)	intron (NR_152882, intron 1 of 16)	1106.0	NR_152882	58805.0	Mm.34213	NM_021455	ENSMUSG00000005373	Mlxipl	ChREBP|Mlx|WS-bHLH|Wbscr14|bHLHd14	MLX interacting protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-33953114-3	chr13	33952627	33953627	+	692.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040707, intron 1 of 4)	intron (NR_040707, intron 1 of 4)	-11532.0	NM_001163239	18105.0	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	N-ribosyldihydronicotinamide quinone reductase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-109894986-3	chr9	109894501	109895501	+	692.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5358.0	NR_106057	102465660.0		NR_106057	ENSMUSG00000098490	Mir7089	Gm27418|mmu-mir-7089	microRNA 7089	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70855334-2	chr17	70854808	70855808	+	692.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1776.0	NM_001164074	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33558487-4	chr2	33557982	33558982	+	692.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82029.0	NM_010725	16917.0	Mm.39825	NM_010725	ENSMUSG00000038765	Lmx1b	Icst|LMX1.1|LMX1.2	LIM homeobox transcription factor 1 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-17154191-3	chr11	17153697	17154697	+	692.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-5101.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118533493-2	chr2	118532993	118533993	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331221, intron 3 of 3)	intron (NM_001331221, intron 3 of 3)	11094.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59592397-2	chr15	59591897	59592897	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 6 of 6)	intron (NM_026746, intron 6 of 6)	-56257.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53805159-2	chr11	53804659	53805659	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	B3A|SINE|B2	34686.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37176205-1	chr19	37175705	37176705	+	692.0	f1_balb.idr	promoter-TSS (NM_001290826)	promoter-TSS (NM_001290826)	-142.0	NM_001290826	208922.0	Mm.391176	NM_198300	ENSMUSG00000039652	Cpeb3	4831444O18Rik|CPE-BP3|mKIAA0940	cytoplasmic polyadenylation element binding protein 3	protein-coding	0.0	0.0	0.5	8.0	14.5	9.5
Merged-chr10-127118670-2	chr10	127118170	127119170	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177614, intron 5 of 13)	URR1A|DNA|hAT-Charlie	2490.0	NM_177614	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73902317-2	chr12	73901817	73902817	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313920, intron 1 of 14)	intron (NM_001313920, intron 1 of 14)	993.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58107212-2	chr11	58106712	58107712	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356477, intron 1 of 6)	intron (NM_001356477, intron 1 of 6)	2983.0	NM_001356477	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	1.0	17.5	6.0	33.5	18.5	12.0
Merged-chr13-107822043-1	chr13	107821543	107822543	+	692.0	f1_balb.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	68021.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	3.5	8.0	0.5	2.5	12.0	7.0
Merged-chr1-121155522-3	chr1	121155032	121156032	+	692.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68127.0	NR_110450	98452.0	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-16373012-2	chr14	16372512	16373512	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009409, intron 1 of 35)	intron (NM_009409, intron 1 of 35)	7806.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-144349198-2	chr1	144348698	144349698	+	692.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-100094.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84843800-3	chr3	84843299	84844299	+	692.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177773, intron 1 of 13)	intron (NM_001177773, intron 1 of 13)	-20346.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	2.0	0.0	7.5	13.5	8.0	7.0
Merged-chr12-76766530-2	chr12	76766030	76767030	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_154884, intron 1 of 2)	intron (NR_154884, intron 1 of 2)	992.0	NM_206534	211151.0	Mm.80970	NM_206534	ENSMUSG00000090258	Churc1	1700030P15Rik|My015|chch	churchill domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-29955828-2	chr18	29955328	29956328	+	692.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-317037.0	NM_181414	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55555396-2	chr14	55554896	55555896	+	692.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4633.0	NR_037572	28199.0	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50750795-1	chr14	50750295	50751295	+	692.0	f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-6471.0	NM_020288	56858.0	Mm.103732	NM_020288	ENSMUSG00000059069	Olfr749	MOR106-1|ORL461|Ors1	olfactory receptor 749	protein-coding	0.0	0.0	2.0	0.0	0.0	14.0
Merged-chr2-25331786-2	chr2	25331286	25332286	+	692.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029983)	promoter-TSS (NM_001029983)	785.0	NR_027448	100272219.0	Mm.382103	NR_027448	ENSMUSG00000097345	AA543186	-	expressed sequence AA543186	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-102685498-2	chr13	102684998	102685998	+	692.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8049.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66515861-2	chr9	66515361	66516361	+	692.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001302116, exon 14 of 14)	3' UTR (NM_001302116, exon 14 of 14)	-1268.0	NM_175206	74165.0	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132903708-1	chr2	132903208	132904208	+	692.0	f0_balb.idr	TTS (NM_198029)	TTS (NM_198029)	-22846.0	NM_177303	320974.0	Mm.357342	NM_177303	ENSMUSG00000043110	Lrrn4	B430119L13Rik|Nlrr4	leucine rich repeat neuronal 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80092225-1	chr15	80091725	80092725	+	692.0	f1_balb.idr	intron (NM_207708, intron 1 of 3)	intron (NM_207708, intron 1 of 3)	891.0	NM_207708	20972.0	Mm.230301	NM_009303	ENSMUSG00000022415	Syngr1	R75468|Syngr1b|p29	synaptogyrin 1	protein-coding	0.0	0.0	2.5	4.0	0.0	5.0
Merged-chr7-44498098-2	chr7	44497598	44498598	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357651, intron 2 of 3)	intron (NM_001357651, intron 2 of 3)	1510.0	NM_028169	75538.0	Mm.258841	NM_028169	ENSMUSG00000051113	Fam71e1	0610007G24Rik|1700021N13Rik|1700021P22Rik|GARI-L5	family with sequence similarity 71, member E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165580475-2	chr1	165579975	165580975	+	692.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54066.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-69845029-1	chr16	69844529	69845529	+	692.0	f1_c57bl6.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	18715.0	NM_173069	224318.0	Mm.212743	NM_173069	ENSMUSG00000063163	Speer2	SPEER-2	spermatogenesis associated glutamate (E)-rich protein 2	protein-coding	0.0	1.0	6.0	0.0	0.0	0.0
Merged-chr15-96695954-2	chr15	96695454	96696454	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355633, intron 3 of 14)	intron (NM_001355633, intron 3 of 14)	3774.0	NM_001355633	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37891534-2	chr1	37891034	37892034	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356482, intron 1 of 4)	B3|SINE|B2	1057.0	NM_027098	107734.0	Mm.26614	NM_027098	ENSMUSG00000026087	Mrpl30	2310001L22Rik|L30mt|MRP-L28|MRP-L30|Rpml28	mitochondrial ribosomal protein L30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92104179-2	chr1	92103679	92104679	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207225, intron 2 of 26)	intron (NM_207225, intron 2 of 26)	76162.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0.0	4.0	4.0	5.5	0.0	0.0
Merged-chr16-95731566-2	chr16	95731066	95732066	+	692.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29159.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135795276-2	chr1	135794776	135795776	+	692.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4145.0	NM_021467	21952.0	Mm.44379	NM_021467	ENSMUSG00000026418	Tnni1	2700018B22Rik|AI747285|ssTnI	troponin I, skeletal, slow 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139749934-2	chr5	139749434	139750434	+	692.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13601.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70068011-2	chr14	70067511	70068511	+	692.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9434.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62482197-2	chr4	62481697	62482697	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138653, intron 1 of 6)	L2|LINE|L2	2130.0	NM_138653	192120.0	Mm.29808	NM_138653	ENSMUSG00000028392	Bspry	-	B-box and SPRY domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-7653722-1	chr2	7653222	7654222	+	692.0	f0_balb.idr	Intergenic	RMER19B2|LTR|ERVK	-257524.0	NM_001110231	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-48493384-2	chr9	48492884	48493884	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144948, intron 3 of 4)	intron (NM_144948, intron 3 of 4)	1946.0	NM_001326355	67010.0	Mm.76911	NM_144948	ENSMUSG00000042396	Rbm7	1200007M24Rik|1500011D06Rik|AU041934|AW554393	RNA binding motif protein 7	protein-coding	29.0	64.0	28.0	29.5	115.5	51.0
Merged-chr10-22305943-2	chr10	22305443	22306443	+	692.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015465)	promoter-TSS (NR_015465)	-777.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	32.0	46.0	33.0	60.5	87.0	74.5
Merged-chr15-76352791-2	chr15	76352291	76353291	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026859, intron 3 of 7)	intron (NM_026859, intron 3 of 7)	1497.0	NM_026859	68877.0	Mm.289680	NM_026859	ENSMUSG00000022553	Maf1	1110068E11Rik|AU042856	MAF1 homolog, negative regulator of RNA polymerase III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr14-17812637-1	chr14	17812137	17813137	+	692.0	f0_balb.idr	intron (NM_001113417, intron 1 of 9)	L1M5|LINE|L1	151677.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65677277-2	chr9	65676777	65677777	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301307, intron 1 of 4)	intron (NM_001301307, intron 1 of 4)	729.0	NM_001301307	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98614008-2	chr15	98613508	98614508	+	692.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6375.0	NM_007405	11512.0	Mm.157091	NM_007405	ENSMUSG00000022994	Adcy6	AC6|mKIAA0422	adenylate cyclase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63587259-2	chr4	63586759	63587759	+	692.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001356354)	TTS (NM_001356354)	13505.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-34119019-2	chr16	34118519	34119519	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 33 of 59)	intron (NM_177357, intron 33 of 59)	-151981.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89219944-2	chr3	89219444	89220444	+	692.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013691, exon 9 of 23)	exon (NM_013691, exon 9 of 23)	3356.0	NR_149740	21827.0	Mm.2114	NM_013691	ENSMUSG00000028047	Thbs3	TSP3|Thbs-3	thrombospondin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-131840732-2	chr4	131840232	131841232	+	692.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2454.0	NM_001083119	19273.0	Mm.4860	NM_011214	ENSMUSG00000028909	Ptpru	Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda	protein tyrosine phosphatase, receptor type, U	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100365814-2	chr11	100365314	100366314	+	692.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9673.0	NM_010404	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-19853919-3	chr4	19853415	19854415	+	692.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35188.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	6.5	4.0	11.5	6.5	4.0	9.5
Merged-chr12-31943480-1	chr12	31942980	31943980	+	692.0	f1_balb.idr	intron (NM_177993, intron 2 of 8)	B4A|SINE|B4	6765.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	8.5	6.0	1.0	17.5	6.5	1.5
Merged-chr14-21706769-2	chr14	21706269	21707269	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013826, intron 1 of 3)	intron (NM_001013826, intron 1 of 3)	7807.0	NM_001013826	435391.0	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	6.5	22.0	14.0	15.0	12.5	12.5
Merged-chr4-84360187-2	chr4	84359687	84360687	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172870, intron 4 of 5)	intron (NM_172870, intron 4 of 5)	314899.0	NM_172870	242509.0	Mm.190774	NM_172870	ENSMUSG00000028487	Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding	0.0	0.0	1.5	2.5	0.0	2.5
Merged-chr12-100080352-2	chr12	100079852	100080852	+	692.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31979.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13670258-2	chr8	13669758	13670758	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	7329.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	3.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86613175-1	chr11	86612675	86613675	+	692.0	f0_c57.idr	intron (NM_001356531, intron 7 of 11)	B3|SINE|B2	-29017.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25378442-2	chr7	25377942	25378942	+	692.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_073028, exon 3 of 7)	non-coding (NR_073028, exon 3 of 7)	1623.0	NR_073027	654804.0	Mm.389841	NM_001039540	ENSMUSG00000053714	4732471J01Rik	-	RIKEN cDNA 4732471J01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126740575-2	chr4	126740075	126741075	+	692.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4306.0	NM_198960	332937.0	Mm.331881	NM_198960	ENSMUSG00000042477	Tfap2e	AI505200|AP-2e|Tcfap2e	transcription factor AP-2, epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85087065-1	chr1	85086565	85087565	+	692.0	f1_balb.idr	Intergenic	RMER19C|LTR|ERVK	22788.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167467557-1	chr2	167467057	167468057	+	692.0	f0_balb.idr	intron (NM_001304542, intron 10 of 15)	intron (NM_001304542, intron 10 of 15)	-25088.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57338257-1	chr16	57337757	57338757	+	692.0	f0_balb.idr	intron (NM_025599, intron 1 of 9)	intron (NM_025599, intron 1 of 9)	-15020.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	5.5	48.5	16.0	6.0	20.0	11.5
Merged-chr18-66435759-1	chr18	66435259	66436259	+	692.0	f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-22845.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	3.5
Merged-chr9-14067613-3	chr9	14067083	14068083	+	692.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-208718.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27316191-2	chr3	27315691	27316691	+	692.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009425)	promoter-TSS (NM_009425)	-886.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42272638-2	chr10	42272138	42273138	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	4104.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-59125767-1	chr3	59125267	59126267	+	692.0	f0_balb.idr	intron (NM_001287119, intron 1 of 2)	intron (NM_001287119, intron 1 of 2)	4995.0	NM_001287124	140795.0	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63446106-1	chr14	63445606	63446606	+	692.0	f0_balb.idr	intron (NM_177628, intron 2 of 3)	intron (NM_177628, intron 2 of 3)	9712.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120475384-2	chr14	120474884	120475884	+	692.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3077.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-26445702-2	chr11	26445202	26446202	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_102382, intron 7 of 11)	RLTR16C_MM|LTR|ERVK	58618.0	NR_102382	67030.0	Mm.18875	NM_025923	ENSMUSG00000004018	Fancl	2010322C19Rik|AW554273|B230118H11Rik|Phf9|Pog|gcd	Fanconi anemia, complementation group L	protein-coding	13.5	7.0	2.5	1.0	5.5	4.5
Merged-chr9-118697823-2	chr9	118697352	118698352	+	691.974976	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 14 of 27)	intron (NM_133721, intron 14 of 27)	-13840.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	1.5	7.5	1.0	7.0
Merged-chr4-138184852-2	chr4	138184365	138185365	+	691.958374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355700, intron 23 of 30)	intron (NM_001355700, intron 23 of 30)	21656.0	NR_105825	102466907.0		NR_105825	ENSMUSG00000098513	Mir6399	Gm27667|mir-6399|mmu-mir-6399	microRNA 6399	ncRNA	1.0	0.0	1.0	0.0	0.0	0.0
Merged-chr5-104074524-3	chr5	104074024	104075024	+	691.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163772, intron 4 of 9)	intron (NM_001163772, intron 4 of 9)	3084.0	NM_001163772	100271704.0	Mm.366664	NM_001163772	ENSMUSG00000091034	Gm17660	Scpppq1	predicted gene, 17660	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8959115-3	chr3	8958625	8959625	+	691.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	5021.0	NM_001025262	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-68184203-2	chr18	68183703	68184703	+	691.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-43743.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79150837-2	chr3	79150312	79151312	+	691.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4937.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	5.5	0.0	0.0	0.0	3.5	0.0
Merged-chr6-72437406-2	chr6	72436906	72437906	+	691.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_145569, exon 2 of 9)	exon (NM_145569, exon 2 of 9)	-1277.0	NR_046011	78108.0	Mm.440743	NR_046011	ENSMUSG00000108591	Particl	4930414L22Rik|AI449819	promoter of Mat2a antisense radiation induced circulating long non-coding RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24297532-2	chr13	24297032	24298032	+	691.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16742.0	NM_026825	68732.0	Mm.211047	NM_026825	ENSMUSG00000021338	Carmil1	1110037D04Rik|AI425970|CARMIL|CARML1|D130057M20|Lrrc16|Lrrc16a	capping protein regulator and myosin 1 linker 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167898374-2	chr2	167897874	167898874	+	691.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33953.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166731564-2	chr2	166731064	166732064	+	691.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-17732.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114356723-2	chr5	114356201	114357201	+	691.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164573, intron 21 of 30)	intron (NM_001164573, intron 21 of 30)	23804.0	NM_001159941	330171.0	Mm.238285	NM_026145	ENSMUSG00000001098	Kctd10	AW536343|C87062|mBACURD3	potassium channel tetramerisation domain containing 10	protein-coding	10.0	0.0	1.0	0.0	0.0	0.0
Merged-chr6-114250462-4	chr6	114249941	114250941	+	691.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172890)	TTS (NM_172890)	-32194.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61071945-2	chr18	61071445	61072445	+	691.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_008809, intron 11 of 22)	intron (NM_008809, intron 11 of 22)	26795.0	NM_008809	18596.0	Mm.4146	NM_008809	ENSMUSG00000024620	Pdgfrb	AI528809|CD140b|PDGFR-1|Pdgfr	platelet derived growth factor receptor, beta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-24647357-4	chr6	24646851	24647851	+	691.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028459, intron 1 of 10)	intron (NM_028459, intron 1 of 10)	17644.0	NM_001167745	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81053770-3	chr13	81053266	81054266	+	691.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015587, intron 1 of 1)	intron (NR_015587, intron 1 of 1)	89692.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-68927578-2	chr2	68927078	68928078	+	691.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	intron (NM_001347161, intron 1 of 10)	66137.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73542435-2	chr7	73541935	73542935	+	691.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081345)	promoter-TSS (NM_001081345)	-689.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115181285-2	chr11	115180793	115181793	+	691.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_012030)	TTS (NM_012030)	6023.0	NM_025400	66176.0	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	5.5	1.5	2.5	8.5	0.5	2.0
Merged-chr1-86438644-2	chr1	86438144	86439144	+	691.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	12315.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5850876-2	chr19	5850376	5851376	+	691.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026169)	TTS (NM_026169)	-5396.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-75768415-2	chr16	75767915	75768915	+	691.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1597.0	NM_030201	110920.0	Mm.26704	NM_030201	ENSMUSG00000032932	Hspa13	1600002I10Rik|AV006182|B230217N24Rik|Stch	heat shock protein 70 family, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135613888-2	chr5	135613386	135614386	+	691.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-18768.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	0.0	0.5	2.0	0.0	5.0	3.5
Merged-chr15-98608919-2	chr15	98608419	98609419	+	691.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1286.0	NM_007405	11512.0	Mm.157091	NM_007405	ENSMUSG00000022994	Adcy6	AC6|mKIAA0422	adenylate cyclase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91346991-3	chr1	91346544	91347544	+	691.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033292, exon 9 of 9)	3' UTR (NM_001033292, exon 9 of 9)	-4029.0	NM_027551	70788.0	Mm.68617	NM_027551	ENSMUSG00000026308	Klhl30	4631423F02Rik	kelch-like 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110642621-3	chr11	110642098	110643098	+	691.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	163258.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5020903-2	chr11	5020403	5021403	+	691.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243043, intron 7 of 22)	intron (NM_001243043, intron 7 of 22)	34079.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180412559-2	chr1	180412059	180413059	+	691.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	70945.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-34769864-2	chr14	34769364	34770364	+	691.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50272.0	NM_008166	14803.0	Mm.121569	NM_008166	ENSMUSG00000041078	Grid1	GluD1|GluRdelta1	glutamate receptor, ionotropic, delta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-75617784-4	chr16	75617271	75618271	+	691.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24880.0	NM_198302	224344.0	Mm.273214	NM_198302	ENSMUSG00000032940	Rbm11	A330018F01	RNA binding motif protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-5222416-2	chr12	5221916	5222916	+	691.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164493, intron 2 of 13)	intron (NM_001164493, intron 2 of 13)	153266.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86815881-2	chr11	86815381	86816381	+	691.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR6_Mm|LTR|ERV1	-8221.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35752058-4	chr16	35751554	35752554	+	691.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	RLTR13D|LTR|ERVK	17302.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	27.0	17.5	10.5	14.0	24.0	8.5
Merged-chr1-152770990-3	chr1	152770500	152771500	+	691.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026369, intron 2 of 3)	intron (NM_026369, intron 2 of 3)	4458.0	NM_026369	67771.0	Mm.288974	NM_026369	ENSMUSG00000008475	Arpc5	5830443F10Rik|p16-Arc	actin related protein 2/3 complex, subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-63555112-3	chr15	63554613	63555613	+	691.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-75505.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	7.0	0.5	1.5	1.5	0.0	1.0
Merged-chr14-7880828-3	chr14	7880337	7881337	+	691.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081427, intron 4 of 45)	intron (NM_001081427, intron 4 of 45)	62880.0	NM_134080	286940.0	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118653636-2	chr9	118653136	118654136	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 5 of 27)	intron (NM_133721, intron 5 of 27)	46927.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	7.0	7.0	8.0	12.5	8.5	6.0
Merged-chr10-17703979-2	chr10	17703479	17704479	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie19a|DNA|hAT-Charlie	-19249.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75603424-2	chr2	75602924	75603924	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55835.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37072691-3	chr19	37072190	37073190	+	691.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198300, intron 7 of 10)	intron (NM_198300, intron 7 of 10)	-101153.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	2.5	0.0	1.0	0.0	0.0	0.0
Merged-chr11-74843221-2	chr11	74842721	74843721	+	691.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010813, exon 6 of 6)	exon (NM_010813, exon 6 of 6)	12297.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63662840-2	chr4	63662340	63663340	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28419.0	NR_151544	102632940.0	Mm.399154	NR_151544	ENSMUSG00000086817	Gm11482	-	predicted gene 11482	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20735993-2	chr9	20735493	20736493	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357639, intron 1 of 5)	intron (NM_001357639, intron 1 of 5)	-7764.0	NM_173777	244723.0	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-8210012-2	chr14	8209512	8210512	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4069.0	NM_027782	71393.0	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181457998-2	chr2	181457498	181458498	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028125, intron 1 of 2)	intron (NM_028125, intron 1 of 2)	1428.0	NM_028125	72147.0	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75494134-2	chr11	75493634	75494634	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138659, intron 15 of 41)	intron (NM_138659, intron 15 of 41)	7357.0	NM_138659	192159.0	Mm.3757	NM_138659	ENSMUSG00000020850	Prpf8	AU019467|D11Bwg0410e|DBF3/PRP8|Prp8|Sfprp8l	pre-mRNA processing factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-12305526-2	chr12	12305026	12306026	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 2 of 11)	MTA_Mm|LTR|ERVL-MaLR	43387.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92097880-2	chr5	92097380	92098380	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-14136.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-82343863-1	chr13	82343363	82344363	+	691.5	f1_balb.idr	Intergenic	L1_Mus3|LINE|L1	354470.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-114963418-2	chr13	114962918	114963918	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033228, intron 28 of 28)	intron (NM_001033228, intron 28 of 28)	-31318.0	NM_008396	16398.0	Mm.5007	NM_008396	ENSMUSG00000015533	Itga2	CD49B|DX5|GPIa	integrin alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-28036063-2	chr5	28035563	28036563	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35349.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-140962453-2	chr4	140961953	140962953	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355515, intron 1 of 7)	B3|SINE|B2	1182.0	NM_023374	67680.0	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-141646758-2	chr3	141646258	141647258	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293561, intron 1 of 16)	intron (NM_001293561, intron 1 of 16)	181194.0	NM_009472	22253.0	Mm.24430	NM_009472	ENSMUSG00000059921	Unc5c	B130051O18Rik|Unc5h3|rcm	unc-5 netrin receptor C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115184694-2	chr11	115184194	115185194	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025400, intron 3 of 6)	intron (NM_025400, intron 3 of 6)	2622.0	NM_025400	66176.0	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	4.5	29.0	23.5	0.0	0.0	4.5
Merged-chr16-94608815-2	chr16	94608315	94609315	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-2604.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-53707338-2	chr8	53706838	53707838	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68273.0	NM_146208	234258.0	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-103685982-2	chr5	103685482	103686482	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-30250.0	NM_001163550	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-71678647-2	chr4	71678147	71679147	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	522246.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117080748-2	chr11	117080248	117081248	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3400.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81525741-2	chr15	81525241	81526241	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	59425.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84154137-2	chr1	84153637	84154637	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003948, intron 2 of 2)	intron (NM_001003948, intron 2 of 2)	64824.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39938717-2	chr1	39938217	39939217	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 2 of 29)	RLTR17B_Mm|LTR|ERVK	37804.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51378258-2	chr3	51377758	51378758	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	18289.0	NR_028121	67749.0	Mm.273339	NM_026358	ENSMUSG00000037161	Mgarp	4930583H14Rik|AI195347|CESP-1|HUMMR|Osap|Qsap	mitochondria localized glutamic acid rich protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38385862-2	chr15	38385362	38386362	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85151.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118257412-2	chr11	118256912	118257912	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8820.0	NM_011180	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73056063-2	chr15	73055563	73056563	+	691.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029640)	promoter-TSS (NM_029640)	-251.0	NM_029640	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	0.0	4.0	0.5	0.0	0.5	1.5
Merged-chr8-4529847-2	chr8	4529347	4530347	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36442.0	NM_026058	67260.0	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83150970-2	chr15	83150425	83151425	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1280.0	NR_004432	104307.0	Mm.471434	NR_004432	ENSMUSG00000065176	Rnu12	-	RNA U12, small nuclear	snRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3431178-2	chr12	3430678	3431678	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270988, intron 1 of 11)	B3A|SINE|B2	4321.0	NM_172421	75302.0	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2, transcriptional regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-83932645-2	chr12	83932145	83933145	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10711.0	NR_073564	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117464575-2	chr8	117464075	117465075	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5310.0	NR_106046	102465653.0		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97574799-2	chr11	97574299	97575299	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 1 of 19)	intron (NM_018873, intron 1 of 19)	327.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-30047247-2	chr6	30046747	30047747	+	691.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010938)	promoter-TSS (NM_010938)	-741.0	NM_001164228	18181.0	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	3.0	0.5	3.5	3.0	0.0	3.5
Merged-chr4-83274926-2	chr4	83274426	83275426	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 2 of 19)	intron (NM_027238, intron 2 of 19)	49263.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0.0	5.0	8.0	11.5	4.5	23.0
Merged-chr11-83583546-2	chr11	83583046	83584046	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 1 of 8)	intron (NR_036453, intron 1 of 8)	1485.0	NR_036452	100504464.0	Mm.341706	NR_036452	ENSMUSG00000051832	E230016K23Rik	-	RIKEN cDNA E230016K23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21170511-2	chr9	21170011	21171011	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183408, intron 1 of 14)	B1_Mus2|SINE|Alu	4797.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-143852126-2	chr2	143851626	143852626	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291061, intron 2 of 7)	intron (NM_001291061, intron 2 of 7)	11047.0	NM_009751	12075.0	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141214442-2	chr4	141213942	141214942	+	691.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081174, exon 2 of 6)	exon (NM_001081174, exon 2 of 6)	486.0	NM_001081174	76166.0	Mm.271064	NM_001081174	ENSMUSG00000073733	Rsg1	6330545A04Rik|Gm723|b2b2804Clo|b2b2827Clo	REM2 and RAB-like small GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58907039-2	chr11	58906539	58907539	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-2814.0	NM_011758	22698.0	Mm.127646	NM_011758	ENSMUSG00000037001	Zfp39	CTfin33|Zfp-39	zinc finger protein 39	protein-coding	0.0	3.5	5.0	0.0	0.0	4.0
Merged-chr11-70226315-2	chr11	70225815	70226815	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007528, intron 8 of 8)	intron (NM_007528, intron 8 of 8)	3483.0	NM_007528	12029.0	Mm.12930	NM_007528	ENSMUSG00000000317	Bcl6b	Bazf	B cell CLL/lymphoma 6, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30449214-2	chr16	30448713	30449713	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4-int|LTR|ERVK	-60683.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	1.5	2.5	5.0	2.0	1.0	0.0
Merged-chr12-110984204-2	chr12	110983704	110984704	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5164.0	NM_001361916	74251.0	Mm.250989	NM_175207	ENSMUSG00000037904	Ankrd9	2500003O20Rik	ankyrin repeat domain 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-57791544-2	chr8	57791044	57792044	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175032, intron 11 of 11)	intron (NM_175032, intron 11 of 11)	-138489.0	NM_144731	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56836847-2	chr17	56836347	56837347	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5839.0	NM_027787	19725.0	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106361350-2	chr9	106360849	106361849	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7283.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	1.5	1.5	0.0	1.5	1.5	0.0
Merged-chr11-100473193-2	chr11	100472693	100473693	+	691.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172565)	promoter-TSS (NM_172565)	-411.0	NM_172565	217194.0	Mm.183320	NM_172565	ENSMUSG00000048732	Klhl11	BC011167	kelch-like 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-16651817-2	chr10	16651317	16652317	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	443965.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18879162-2	chr16	18878662	18879662	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010435, intron 1 of 24)	intron (NM_010435, intron 1 of 24)	2412.0	NM_010435	15260.0	Mm.15694	NM_010435	ENSMUSG00000022702	Hira	AA138857|D16Ertd95e|Gm15797|N28177|Tuple1	histone cell cycle regulator	protein-coding	0.0	0.0	0.0	0.0	4.0	7.5
Merged-chr17-6105730-2	chr17	6105230	6106230	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1100.0	NM_001103181	68842.0	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	6.5	16.5	8.5	2.0	2.5	5.5
Merged-chr6-51550141-4	chr6	51549627	51550627	+	691.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361577, intron 1 of 6)	L1MB8|LINE|L1	4834.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127771371-2	chr7	127770871	127771871	+	691.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_198424, intron 1 of 1)	intron (NM_198424, intron 1 of 1)	1556.0	NM_198424	269999.0	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132800210-5	chr4	132799744	132800744	+	691.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3880.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155624940-3	chr2	155624437	155625437	+	691.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085378, intron 21 of 41)	intron (NM_001085378, intron 21 of 41)	2057.0	NR_030757	735275.0		NR_030757	ENSMUSG00000076312	Mir499	Mirn499|mir-499|mmu-mir-499	microRNA 499	ncRNA	2.5	3.0	3.5	0.0	0.5	0.0
Merged-chr13-95032254-2	chr13	95031754	95032754	+	691.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172263, intron 17 of 19)	MTC|LTR|ERVL-MaLR	55910.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105405158-3	chr5	105404660	105405660	+	691.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10615.0	NM_001033550	433926.0	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	2210408K08Rik|R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	0.0	3.5	0.0	0.0	6.5	2.5
Merged-chr2-59337648-2	chr2	59337148	59338148	+	691.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_026361, exon 13 of 22)	exon (NM_026361, exon 13 of 22)	49034.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-119871960-2	chr7	119871460	119872460	+	691.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163703, intron 1 of 2)	intron (NM_001163703, intron 1 of 2)	23498.0	NM_173408	233805.0	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-43374761-1	chr18	43374261	43375261	+	691.333313	f0_balb.idr	intron (NM_001291455, intron 1 of 13)	LTR33|LTR|ERVL	-1489.0	NM_001136086	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	2.5	0.0	0.0	2.5	4.0	3.5
Merged-chr2-113573320-3	chr2	113572795	113573795	+	691.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 6 of 16)	intron (NM_001285459, intron 6 of 16)	-111795.0	NM_001287818	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.0	0.0	1.5	0.0	0.0	3.0
Merged-chr2-73419374-3	chr2	73418853	73419853	+	691.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32873.0	NM_001276444	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-156255690-1	chr4	156255190	156256190	+	691.333313	f0_balb.idr	promoter-TSS (NM_001110516)	promoter-TSS (NM_001110516)	-348.0	NM_001110516	231004.0	Mm.406833	NM_173736	ENSMUSG00000096351	Samd11	BC026991|mr-s	sterile alpha motif domain containing 11	protein-coding	1.0	0.0	3.5	0.0	3.0	1.0
Merged-chr10-93768402-3	chr10	93767928	93768928	+	691.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-63127.0	NM_001206851	327799.0	Mm.491598	NM_183199	ENSMUSG00000020020	Usp44	E430004F17Rik	ubiquitin specific peptidase 44	protein-coding	2.0	7.5	7.0	0.0	0.5	7.5
Merged-chr14-70403163-3	chr14	70402657	70403657	+	691.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021308, intron 10 of 22)	intron (NM_021308, intron 10 of 22)	25937.0	NM_021308	57746.0	Mm.85253	NM_021308	ENSMUSG00000033644	Piwil2	Piwil1l|mili	piwi-like RNA-mediated gene silencing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122090762-3	chr3	122090257	122091257	+	691.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007378, intron 11 of 49)	intron (NM_007378, intron 11 of 49)	46297.0	NM_007378	11304.0	Mm.3918	NM_007378	ENSMUSG00000028125	Abca4	AW050280|Abc10|Abcr|D430003I15Rik|RmP	ATP-binding cassette, sub-family A (ABC1), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-178146700-3	chr1	178146204	178147204	+	691.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155538, intron 17 of 21)	intron (NR_155538, intron 17 of 21)	-40713.0	NM_024282	78825.0	Mm.440132	NM_024282	ENSMUSG00000026502	Desi2	5830417C01Rik|DeSI-2|Fam152a|Pppde1	desumoylating isopeptidase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155810243-3	chr1	155809752	155810752	+	691.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024945, intron 1 of 11)	intron (NM_001024945, intron 1 of 11)	2647.0	NM_023268	104009.0	Mm.27035	NM_023268	ENSMUSG00000033684	Qsox1	1300003H02Rik|QSOX|Qscn6|SOx|b2b2673Clo	quiescin Q6 sulfhydryl oxidase 1	protein-coding	0.0	4.0	8.0	11.0	5.5	10.0
Merged-chr3-32409205-3	chr3	32408738	32409738	+	691.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26913.0	NM_008839	18706.0	Mm.260521	NM_008839	ENSMUSG00000027665	Pik3ca	6330412C24Rik|caPI3K|p110|p110alpha	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108663444-2	chr6	108662996	108663996	+	691.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011498, intron 4 of 4)	intron (NM_011498, intron 4 of 4)	-2562.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	1.5	2.0	0.5	0.5	1.0	0.0
Merged-chr8-13588135-2	chr8	13587635	13588635	+	691.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 10 of 23)	intron (NM_009025, intron 10 of 23)	-25674.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr13-60687003-2	chr13	60686553	60687553	+	691.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	84842.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.0	1.0	0.0	0.0	0.0	3.0
Merged-chr3-81050750-2	chr3	81050230	81051230	+	691.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	14314.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	34.0	51.5	50.5	27.0	72.0	68.0
Merged-chr2-83625411-4	chr2	83624912	83625912	+	691.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19166.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92822645-2	chr16	92822145	92823145	+	691.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	3429.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11818933-2	chr11	11818433	11819433	+	691.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_016672, intron 13 of 14)	intron (NM_016672, intron 13 of 14)	-9971.0	NM_001163360	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40268060-3	chr9	40267570	40268570	+	691.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1146.0	NM_001083917	235281.0	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60658435-3	chr10	60657967	60658967	+	691.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 2 of 68)	intron (NM_001252635, intron 2 of 68)	38023.0	NM_001252635	22295.0	Mm.440327	NM_023370	ENSMUSG00000012819	Cdh23	4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v	cadherin 23 (otocadherin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102830393-2	chr2	102829893	102830893	+	691.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039151, intron 5 of 8)	intron (NM_001039151, intron 5 of 8)	71272.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.0	2.5	10.5	2.5	16.0	3.0
Merged-chr15-84891870-3	chr15	84891381	84892381	+	691.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-31547.0	NM_016714	18141.0	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	1.5	0.0	0.0	1.5	0.0	0.0
Merged-chr3-88627154-2	chr3	88626654	88627654	+	691.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 1 of 21)	intron (NM_001198913, intron 1 of 21)	5760.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80642770-2	chr10	80642270	80643270	+	691.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145361, exon 9 of 9)	3' UTR (NM_145361, exon 9 of 9)	13114.0	NM_001159591	103236.0	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99097083-2	chr12	99096583	99097583	+	691.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65725.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21467196-3	chr19	21466698	21467698	+	691.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010266, intron 1 of 13)	intron (NM_010266, intron 1 of 13)	5463.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	11.5	8.5	1.0	14.0	0.0	0.5
Merged-chr19-55862710-3	chr19	55862204	55863204	+	691.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-32617.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-84977421-2	chr4	84976921	84977921	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175275, intron 7 of 25)	intron (NM_175275, intron 7 of 25)	93112.0	NM_177385	338349.0	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-141090744-2	chr3	141090244	141091244	+	691.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	121611.0	NM_008811	18598.0	Mm.4223	NM_008811	ENSMUSG00000047674	Pdha2	Pdhal	pyruvate dehydrogenase E1 alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25100355-1	chr12	25099855	25100855	+	691.0	f0_balb.idr	Intergenic	Intergenic	-4263.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	183.0	319.5	267.5	151.5	386.5	295.5
Merged-chr12-98317607-1	chr12	98317107	98318107	+	691.0	f0_balb.idr	Intergenic	Intergenic	48972.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42272444-2	chr19	42271944	42272944	+	691.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7726.0	NR_037246	100526549.0		NR_037246	ENSMUSG00000093234	Mir3085	mir-3085|mmu-mir-3085	microRNA 3085	ncRNA	1.0	1.0	2.5	0.0	0.0	0.0
Merged-chr12-51693563-2	chr12	51693063	51694063	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001329698, intron 1 of 5)	intron (NM_001329698, intron 1 of 5)	-1649.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-75076014-2	chr5	75075505	75076505	+	691.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133256, exon 1 of 2)	exon (NM_133256, exon 1 of 2)	404.0	NM_133256	14843.0	Mm.218752	NM_133256	ENSMUSG00000035946	Gsx2	Gsh-2|Gsh2	GS homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110248824-3	chr7	110248315	110249315	+	691.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009302, intron 2 of 11)	intron (NM_009302, intron 2 of 11)	27112.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-131976820-2	chr4	131976320	131977320	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 9 of 20)	MIRc|SINE|MIR	55049.0	NM_001201367	623230.0	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8833333-2	chr4	8832833	8833833	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 13 of 36)	intron (NM_001355382, intron 13 of 36)	82009.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-83376195-2	chr10	83375695	83376695	+	691.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B1|LTR|ERVK	15974.0	NM_026579	28109.0	Mm.196210	NM_026579	ENSMUSG00000020255	D10Wsu102e	AI747614|C430041I18Rik	DNA segment, Chr 10, Wayne State University 102, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-86871580-2	chr8	86871081	86872081	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	13677.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	1.0	9.5	4.5	12.5	19.0	2.0
Merged-chr6-134795350-1	chr6	134794850	134795850	+	691.0	f1_c57bl6.idr	promoter-TSS (NR_151455)	promoter-TSS (NR_151455)	-300.0	NR_151455	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	1.0	12.0	1.0	4.5	6.0	0.5
Merged-chr5-66153293-2	chr5	66152793	66153793	+	691.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1339.0	NM_001127382	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.0	7.0	10.0	0.0	7.5	7.5
Merged-chr19-3578327-2	chr19	3577827	3578827	+	691.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2578.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	0.5	0.0	1.0	0.0	1.0	0.0
Merged-chr17-57336513-2	chr17	57336013	57337013	+	691.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-22173.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58018651-2	chr15	58018151	58019151	+	691.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15643.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53196012-1	chr15	53195512	53196512	+	691.0	f0_balb.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	150171.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-26674539-2	chr16	26674039	26675039	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152416, intron 2 of 12)	Lx8|LINE|L1	80963.0	NR_105063	100504628.0	Mm.393275	NR_105063	ENSMUSG00000092545	Gm20319	-	predicted gene, 20319	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-36240444-2	chr2	36239944	36240944	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 5 of 10)	intron (NM_008969, intron 5 of 10)	10018.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118418176-2	chr11	118417676	118418676	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029502, intron 1 of 4)	intron (NM_029502, intron 1 of 4)	942.0	NM_001025617	76025.0	Mm.177551	NM_029502	ENSMUSG00000025575	Cant1	5830420C20Rik|Apy1h|D11Bwg0554e|Entpd8|SCAN-1|Shapy	calcium activated nucleotidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75924117-2	chr15	75923617	75924617	+	691.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_031201)	TTS (NM_031201)	-2557.0	NM_025412	66194.0	Mm.250599	NM_025412	ENSMUSG00000022571	Pycrl	1110058B13Rik|2700073G24Rik|Pycr3	pyrroline-5-carboxylate reductase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-17006741-1	chr7	17006241	17007241	+	691.0	f1_c57bl6.idr	intron (NM_011155, intron 9 of 12)	intron (NM_011155, intron 9 of 12)	12153.0	NM_001101535	434130.0	Mm.459162	NM_001101535	ENSMUSG00000041117	Ccdc8	-	coiled-coil domain containing 8	protein-coding	0.0	5.0	0.0	1.0	1.0	1.0
Merged-chr3-159840996-3	chr3	159840471	159841471	+	691.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356350, intron 1 of 12)	intron (NM_001356350, intron 1 of 12)	1321.0	NM_001356350	68151.0	Mm.6766	NM_026582	ENSMUSG00000028173	Wls	5031439A09Rik|AI173978|AI987742|EVI|Gpr177	wntless WNT ligand secretion mediator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5770749-2	chr18	5770249	5771249	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360982, intron 7 of 7)	intron (NM_001360982, intron 7 of 7)	178102.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	4.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19645828-2	chr7	19645328	19646328	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019649, intron 4 of 13)	intron (NM_019649, intron 4 of 13)	-16390.0	NM_009046	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-47008996-1	chr4	47008496	47009496	+	691.0	f1_balb.idr	Intergenic	Intergenic	-17282.0	NM_001081141	242425.0	Mm.101909	NM_001081141	ENSMUSG00000039809	Gabbr2	GABABR2|Gb2|Gm425|Gpr51	gamma-aminobutyric acid (GABA) B receptor, 2	protein-coding	11.0	3.0	1.0	9.5	6.5	4.0
Merged-chr11-50074092-1	chr11	50073592	50074592	+	691.0	f0_balb.idr	intron (NM_001290750, intron 3 of 7)	L1MDa|LINE|L1	4390.0	NR_029769	723845.0		NR_029769	ENSMUSG00000065417	Mir340	Mirn340|mir-340|mmu-mir-340	microRNA 340	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-118376788-2	chr6	118376288	118377288	+	691.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	42629.0	NM_194339	213895.0	Mm.25269	NM_194339	ENSMUSG00000030138	Bms1	AA408648|AU020092|AU043373|BB007109|BC030906|Bms1l|mKIAA0187	BMS1, ribosome biogenesis factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-58982967-2	chr3	58982467	58983467	+	691.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41B|LTR|ERVL	-24011.0	NM_177855	329650.0	Mm.240059	NM_177855	ENSMUSG00000056476	Med12l	A130035F20|A630079M02|AU044581|TRALPUSH	mediator complex subunit 12-like	protein-coding	0.0	0.0	2.0	1.5	0.0	0.0
Merged-chr13-91132194-2	chr13	91131694	91132694	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025770, intron 3 of 7)	MTB_Mm|LTR|ERVL-MaLR	91793.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9061491-1	chr13	9060991	9061991	+	691.0	f0_balb.idr	Intergenic	Intergenic	-32390.0	NM_001311117	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181519871-2	chr2	181519350	181520350	+	691.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016775)	promoter-TSS (NM_016775)	-635.0	NM_016775	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	51.5	75.0	76.5	39.5	69.5	71.0
Merged-chr10-65418454-2	chr10	65417954	65418954	+	691.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-298087.0	NR_152621	102632700.0		NR_152621	ENSMUSG00000100528	Gm28881	-	predicted gene 28881	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126844147-2	chr8	126843647	126844647	+	691.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-4873.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33690884-2	chr16	33690384	33691384	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 1 of 14)	intron (NM_175256, intron 1 of 14)	6418.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46600349-2	chr4	46599849	46600849	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 1 of 11)	intron (NM_001164804, intron 1 of 11)	1580.0	NM_001164804	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	3.0	1.5	1.5	1.5	6.5	1.0
Merged-chr2-128258235-1	chr2	128257735	128258735	+	691.0	f1_balb.idr	Intergenic	Intergenic	130660.0	NM_001284410	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	5.0	0.0	1.0	5.0	0.0	1.0
Merged-chr10-22301064-4	chr10	22300472	22301472	+	691.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	MTC-int|LTR|ERVL-MaLR	-5748.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	3.0	13.0	6.0	14.5	34.5	28.5
Merged-chr10-80799703-2	chr10	80799203	80800203	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013651, intron 1 of 8)	PB1D7|SINE|Alu	968.0	NM_013651	20222.0	Mm.358633	NM_013651	ENSMUSG00000020211	Sf3a2	66kDa|AW047242|PRP11|SFA66|Sap62	splicing factor 3a, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149587709-2	chr4	149587209	149588209	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023051, intron 1 of 18)	intron (NM_023051, intron 1 of 18)	1241.0	NM_023051	65945.0	Mm.38993	NM_023051	ENSMUSG00000039953	Clstn1	1810034E21Rik|Cst-1|Cstn1	calsyntenin 1	protein-coding	0.0	0.0	0.0	1.0	2.5	0.0
Merged-chr15-101231208-3	chr15	101230708	101231708	+	691.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019518, intron 7 of 7)	intron (NM_019518, intron 7 of 7)	-6022.0	NR_045328	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	5.0	4.0	0.0	2.5	0.5	0.0
Merged-chr3-126616678-2	chr3	126616130	126617130	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	ORR1A4|LTR|ERVL-MaLR	19679.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	18.0	16.5	22.5	14.5	35.0	16.0
Merged-chr14-108450292-2	chr14	108449792	108450792	+	691.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	463947.0	NM_199065	76965.0	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-16072800-2	chr16	16072300	16073300	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 5 of 18)	intron (NM_001355731, intron 5 of 18)	74051.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36648680-2	chr15	36648180	36649180	+	691.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39707.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34547641-2	chr5	34547141	34548141	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145858, intron 1 of 12)	B3|SINE|B2	-1935.0	NM_001145859	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36001594-2	chr1	36001094	36002094	+	691.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66806.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137780494-2	chr5	137779994	137780994	+	691.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001356989)	TTS (NM_001356989)	1590.0	NM_027242	69871.0	Mm.276058	NM_027242	ENSMUSG00000029725	Ppp1r35	2010007H12Rik|2010011D20Rik|AL024004	protein phosphatase 1, regulatory subunit 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26512975-1	chr17	26512475	26513475	+	691.0	f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-4503.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	47.0	37.5	37.0	21.5	30.0	36.0
Merged-chr8-90953828-2	chr8	90953328	90954328	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 3 of 39)	intron (NM_177224, intron 3 of 39)	21579.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-48981594-1	chr9	48981094	48982094	+	691.0	f1_c57bl6.idr	Intergenic	Intergenic	-3791.0	NM_001359739	235323.0	Mm.21630	NM_175482	ENSMUSG00000032267	Usp28	9830148O20Rik|AU022237|mKIAA1515	ubiquitin specific peptidase 28	protein-coding	2.0	0.5	0.0	0.0	7.0	4.0
Merged-chr13-12882221-2	chr13	12881721	12882721	+	691.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82142.0	NM_011118	18812.0	Mm.457984	NM_011118	ENSMUSG00000056457	Prl2c3	Ghd1|MRP-2|MRP-3|Mrpplf3|PLF-2|PLF-3|Plf2|Prl2c4|mrp/plf3	prolactin family 2, subfamily c, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15719831-2	chr17	15719301	15720301	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007690, intron 2 of 35)	intron (NM_007690, intron 2 of 35)	14834.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	4.0	8.0	10.5	7.5	2.0	5.0
Merged-chr11-97837916-2	chr11	97837326	97838326	+	691.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010688, exon 7 of 7)	3' UTR (NM_010688, exon 7 of 7)	-2954.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	2.0	13.5	17.0	0.0	12.0	12.5
Merged-chr18-14785949-2	chr18	14785449	14786449	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001100449, intron 1 of 14)	intron (NM_001100449, intron 1 of 14)	2704.0	NM_001100449	72504.0	Mm.312233	NM_001100449	ENSMUSG00000054321	Taf4b	105kDa|2610524B04Rik|4932409F03Rik|AW987595|TAFII-105|TAFII105|Taf2c2	TATA-box binding protein associated factor 4b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4474191-1	chr16	4473691	4474691	+	691.0	f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	48884.0	NM_001347162	106393.0	Mm.35811	NM_175347	ENSMUSG00000022519	Srl	9830004M20Rik|AW108387|sar	sarcalumenin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38231228-2	chr16	38230728	38231728	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 11 of 11)	intron (NM_001347232, intron 11 of 11)	63596.0	NM_010936	18171.0	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129183980-4	chr2	129183479	129184479	+	690.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3306.0	NR_045264	100048701.0	Mm.428544	NR_045264	ENSMUSG00000084826	AI847159	-	expressed sequence AI847159	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122302502-4	chr2	122302025	122303025	+	690.9375	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025777, exon 6 of 6)	3' UTR (NM_025777, exon 6 of 6)	3625.0	NM_025777	66811.0	Mm.171333	NM_025777	ENSMUSG00000027225	Duoxa2	9030623N16Rik|Nip2	dual oxidase maturation factor 2	protein-coding	0.0	5.0	4.5	0.0	3.0	4.5
Merged-chr11-75178033-2	chr11	75177533	75178533	+	690.916687	f1_balb.idr|f1_c57bl6.idr	exon (NM_027136, exon 2 of 2)	exon (NM_027136, exon 2 of 2)	775.0	NM_027136	246257.0	Mm.41496	NM_027136	ENSMUSG00000038268	Ovca2	9030414M07Rik	candidate tumor suppressor in ovarian cancer 2	protein-coding	4.5	5.5	3.5	10.0	11.5	5.0
Merged-chr1-151177883-2	chr1	151177383	151178383	+	690.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39849.0	NR_038011	402734.0	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8700960-2	chr11	8700455	8701455	+	690.900024	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36420.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	42.0	68.5	50.5	42.5	20.0	18.0
Merged-chr18-34858933-3	chr18	34858467	34859467	+	690.888916	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2240.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	5.5	28.0	12.5	6.5	27.5	12.5
Merged-chr18-35751678-3	chr18	35751107	35752107	+	690.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11053.0	NM_001289592	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95291763-3	chr10	95291259	95292259	+	690.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	B3A|SINE|B2	31950.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161478481-2	chr1	161477981	161478981	+	690.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16176.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	2.5	5.0	7.0	5.5	6.0	4.0
Merged-chr5-114917912-2	chr5	114917412	114918412	+	690.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-5328.0	NM_001359946	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0.0	0.0	0.0	7.0	0.0	0.0
Merged-chr7-109618900-2	chr7	109618400	109619400	+	690.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1753.0	NM_029811	76954.0	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-55877380-2	chr17	55876880	55877880	+	690.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_144546, intron 1 of 3)	ORR1B1|LTR|ERVL-MaLR	1573.0	NM_144546	104349.0	Mm.460659	NM_144546	ENSMUSG00000057835	Zfp119a	AL024077|Mzf13|Zfp119	zinc finger protein 119a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105078171-3	chr3	105077706	105078706	+	690.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029228, intron 4 of 4)	intron (NM_029228, intron 4 of 4)	11362.0	NM_029228	75269.0	Mm.307994	NM_029228	ENSMUSG00000051788	4930564D02Rik	-	RIKEN cDNA 4930564D02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151245407-3	chr1	151244914	151245914	+	690.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99072.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15724112-3	chr17	15723684	15724684	+	690.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007690, intron 2 of 35)	B2_Mm1t|SINE|B2	19217.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	13.5	13.0	6.5	12.5	16.0	8.5
Merged-chr13-30981836-3	chr13	30981344	30982344	+	690.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7797.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66138242-3	chr5	66137746	66138746	+	690.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	12732.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	31.5	41.0	38.5	11.0	7.0	14.5
Merged-chr15-80266542-3	chr15	80266048	80267048	+	690.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2242.0	NM_175109	66538.0	Mm.39485	NM_175109	ENSMUSG00000051518	Rps19bp1	2510038A11Rik|AI604923|S19BP	ribosomal protein S19 binding protein 1	protein-coding	1.5	0.0	0.0	3.0	1.5	6.5
Merged-chr11-59545245-4	chr11	59544696	59545696	+	690.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 2 of 9)	B3|SINE|B2	2510.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70672145-2	chr9	70671645	70672645	+	690.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6837.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118605676-2	chr9	118605176	118606176	+	690.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-1033.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54087895-2	chr11	54087395	54088395	+	690.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13029.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119113405-2	chr2	119112905	119113905	+	690.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011234, intron 1 of 9)	intron (NM_011234, intron 1 of 9)	588.0	NM_011234	19361.0	Mm.330492	NM_011234	ENSMUSG00000027323	Rad51	AV304093|Rad51a|Reca	RAD51 recombinase	protein-coding	2.5	17.0	6.5	4.5	1.0	5.5
Merged-chr19-47314378-5	chr19	47313830	47314830	+	690.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 7 of 14)	CpG-7627	-40741.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	1.5	1.0	0.0	1.5	1.0	0.5
Merged-chr9-102981055-3	chr9	102980614	102981614	+	690.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27375.0	NM_033314	24059.0	Mm.207106	NM_033314	ENSMUSG00000032548	Slco2a1	2310021C19Rik|Pgt|Slc21a2|mPgt	solute carrier organic anion transporter family, member 2a1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85265693-1	chr1	85265193	85266193	+	690.666687	f1_balb.idr	intron (NM_175219, intron 1 of 7)	B3A|SINE|B2	4873.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-5243708-3	chr15	5243206	5244206	+	690.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008965, exon 1 of 3)	5' UTR (NM_008965, exon 1 of 3)	481.0	NM_001136079	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17728679-3	chr10	17728161	17729161	+	690.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AmnSINE1|SINE|Deu	5433.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.5	0.0	3.0	0.0	3.0	2.5
Merged-chr5-137535513-2	chr5	137535013	137536013	+	690.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2207.0	NM_010312	14693.0	Mm.30141	NM_010312	ENSMUSG00000029713	Gnb2	Gnb-2	guanine nucleotide binding protein (G protein), beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94627475-2	chr16	94626975	94627975	+	690.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	intron (NM_001113389, intron 2 of 11)	16056.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-117403800-3	chr12	117403315	117404315	+	690.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66803.0	NR_044987	432713.0	Mm.459210	NR_044987	ENSMUSG00000101930	Gm5441	-	predicted gene 5441	ncRNA	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr18-31780674-2	chr18	31780174	31781174	+	690.666687	f1_balb.idr|f1_c57bl6.idr	exon (NM_001242430, exon 8 of 8)	exon (NM_001242430, exon 8 of 8)	-8451.0	NM_001357480	69241.0	Mm.279898	NM_027002	ENSMUSG00000024258	Polr2d	2310002G05Rik|2610028L19Rik|HSRBP4|RBP4	polymerase (RNA) II (DNA directed) polypeptide D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-88954201-3	chr11	88953693	88954693	+	690.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029023, intron 1 of 12)	B2_Mm2|SINE|B2	1249.0	NM_029023	74617.0	Mm.34126	NM_029023	ENSMUSG00000000278	Scpep1	2410018F01Rik|4833411K15Rik|AI957256|Risc	serine carboxypeptidase 1	protein-coding	74.0	105.5	99.0	15.5	39.5	23.5
Merged-chr5-137641283-2	chr5	137640783	137641783	+	690.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081962)	promoter-TSS (NM_001081962)	-190.0	NM_001081962	751865.0	Mm.200763	NM_001081962	ENSMUSG00000079165	Sap25	-	sin3 associated polypeptide	protein-coding	1.0	0.0	0.5	1.0	0.0	0.5
Merged-chr11-75158691-3	chr11	75158191	75159191	+	690.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 16 of 18)	(CA)n|Simple_repeat|Simple_repeat	9461.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0.0	2.5	0.5	0.0	2.5	0.5
Merged-chr7-122347617-3	chr7	122347104	122348104	+	690.549988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	58479.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-33147368-2	chr11	33146868	33147868	+	690.541626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102395)	promoter-TSS (NR_102395)	32.0	NM_008005	14172.0	Mm.339812	NM_008005	ENSMUSG00000057967	Fgf18	D130055P09Rik|FGF-18	fibroblast growth factor 18	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr17-66490158-2	chr17	66489658	66490658	+	690.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29512.0	NM_024448	19328.0	Mm.248313	NM_024448	ENSMUSG00000023460	Rab12	2900054P15Rik|AW555448|C77700	RAB12, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-10315715-2	chr3	10315215	10316215	+	690.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018864, intron 8 of 8)	intron (NM_018864, intron 8 of 8)	-14532.0	NM_029310	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65728581-2	chr5	65728081	65729081	+	690.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-30725.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78203942-2	chr10	78203442	78204442	+	690.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081055, exon 14 of 23)	exon (NM_001081055, exon 14 of 23)	-18793.0	NM_029546	110816.0	Mm.103522	NM_029546	ENSMUSG00000032834	Pwp2	6530411D08Rik|Pwp2h|wdp103	PWP2 periodic tryptophan protein homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98671147-2	chr7	98670647	98671647	+	690.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14578.0	NM_172280	233545.0	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	2.5	3.0	3.5	0.0	2.5	4.0
Merged-chr7-139119592-2	chr7	139119092	139120092	+	690.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021302, intron 8 of 11)	intron (NM_021302, intron 8 of 11)	33591.0	NM_011993	26757.0	Mm.250414	NM_011993	ENSMUSG00000025478	Dpysl4	AI173505|CRMP-3|Crmp3|DPY4|Drp-4|Ulip4	dihydropyrimidinase-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-105334957-2	chr11	105334457	105335457	+	690.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008626, intron 9 of 29)	B1_Mus2|SINE|Alu	42311.0	NM_008626	17534.0	Mm.235616	NM_008626	ENSMUSG00000020695	Mrc2	Endo180|mKIAA0709|uPARAP	mannose receptor, C type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106148201-2	chr9	106147701	106148701	+	690.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5923.0	NR_029549	387153.0		NR_029549	ENSMUSG00000065407	Mir135a-1	Mir135a01|Mirn135|Mirn135a-1|mir-135a-1	microRNA 135a-1	ncRNA	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr5-8346055-2	chr5	8345555	8346555	+	690.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	22105.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41074426-2	chr19	41073926	41074926	+	690.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153520, intron 1 of 5)	intron (NM_153520, intron 1 of 5)	2687.0	NM_153520	226115.0	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61362003-2	chr14	61361503	61362503	+	690.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1558.0	NM_026598	68177.0	Mm.22758	NM_026598	ENSMUSG00000021928	Ebpl	5730442K12Rik|EBRP	emopamil binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-16465685-2	chr5	16465185	16466185	+	690.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-87810.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40047612-2	chr12	40047112	40048112	+	690.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9625.0	NM_001039515	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89077245-2	chr15	89076745	89077745	+	690.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026485, intron 1 of 9)	MLT1A|LTR|ERVL-MaLR	1181.0	NM_001355617	67976.0	Mm.284710	NM_026485	ENSMUSG00000015363	Trabd	5730502D15Rik|AL023039	TraB domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58799094-2	chr9	58798594	58799594	+	690.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24418.0	NM_001081192	330953.0	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43354084-2	chr5	43353584	43354584	+	690.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118730.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr2-167963282-2	chr2	167962782	167963782	+	690.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	30955.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-37251190-1	chr12	37250690	37251690	+	690.5	f0_balb.idr	intron (NM_178767, intron 2 of 12)	intron (NM_178767, intron 2 of 12)	9551.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	14.0	7.0	10.0	7.5	6.0	4.5
Merged-chr11-116870704-2	chr11	116870204	116871204	+	690.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178620, intron 10 of 12)	PB1D11|SINE|Alu	16704.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	8.0	37.0	16.5	3.0	11.5	4.5
Merged-chr10-80436068-2	chr10	80435568	80436568	+	690.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2415.0	NM_001164148	21423.0	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88382102-2	chr3	88381602	88382602	+	690.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2364.0	NM_007541	12096.0	Mm.389459	NM_007541	ENSMUSG00000074483	Bglap	BGP|Bglap1|OC|OG1|mOC-A	bone gamma carboxyglutamate protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43666425-2	chr19	43665925	43666925	+	690.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356944, intron 1 of 2)	intron (NM_001356944, intron 1 of 2)	8456.0	NM_145156	246696.0	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83447677-2	chr15	83447177	83448177	+	690.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358643, intron 1 of 9)	intron (NM_001358643, intron 1 of 9)	203.0	NM_001358644	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53097059-2	chr4	53096559	53097559	+	690.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 7 of 49)	Lx|LINE|L1	62836.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118157906-3	chr11	118157440	118158440	+	690.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28721.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5646173-2	chr17	5645673	5646673	+	690.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	-152484.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121358564-2	chr3	121358064	121359064	+	690.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_155539, intron 2 of 2)	intron (NR_155539, intron 2 of 2)	66824.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98896814-2	chr10	98896314	98897314	+	690.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_A|LINE|L1	-17828.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90533229-2	chr2	90532711	90533711	+	690.5	f0_c57.idr|f1_balb.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	47436.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	54.0	80.0	68.0	27.5	66.0	35.5
Merged-chr10-73057541-2	chr10	73057041	73058041	+	690.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040646, intron 1 of 4)	Lx5|LINE|L1	29164.0	NR_040646	327768.0	Mm.417745	NR_040646	ENSMUSG00000111994	A330049N07Rik	-	RIKEN cDNA A330049N07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-24575261-2	chr12	24574761	24575761	+	690.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161406, intron 1 of 15)	intron (NM_001161406, intron 1 of 15)	2974.0	NM_001161406	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	1.0	15.0	9.0	11.0	13.5	13.0
Merged-chr8-104366039-2	chr8	104365539	104366539	+	690.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153582, intron 1 of 3)	MTE2b|LTR|ERVL-MaLR	25445.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70064990-2	chr14	70064490	70065490	+	690.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12455.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154376412-2	chr2	154375912	154376912	+	690.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009228)	TTS (NM_009228)	-3693.0	NM_025876	66971.0	Mm.289427	NM_025876	ENSMUSG00000027487	Cdk5rap1	2310066P17Rik	CDK5 regulatory subunit associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34988120-2	chr6	34987620	34988620	+	690.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10121.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-89461317-2	chr9	89460817	89461817	+	690.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161669.0	NM_153509	209743.0	Mm.242899	NM_153509	ENSMUSG00000039313	AF529169	DD1|Kiaa1024	cDNA sequence AF529169	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81303058-2	chr10	81302558	81303558	+	690.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	10095.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118973057-2	chr11	118972557	118973557	+	690.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15124.0	NM_001359574	238011.0	Mm.244114	NM_001030291	ENSMUSG00000046697	Enpp7	Alk-SMase|Gm254	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding	0.0	0.0	0.0	5.0	0.0	0.0
Merged-chr16-71461434-2	chr16	71460934	71461934	+	690.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	211530.0	NR_040576	78221.0	Mm.399298	NR_040576		4930567J20Rik	-	RIKEN cDNA 4930567J20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-104565719-2	chr11	104565219	104566219	+	690.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010858, intron 2 of 8)	intron (NM_010858, intron 2 of 8)	-3521.0	NR_130177	100415912.0	Mm.446786	NR_130177		Gm11665	Gm11664	predicted gene 11665	ncRNA	0.0	3.0	3.5	0.0	3.0	3.5
Merged-chr9-27029445-3	chr9	27028955	27029955	+	690.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178113)	promoter-TSS (NM_178113)	639.0	NM_178027	69091.0	Mm.218717	NM_178027	ENSMUSG00000031988	Vps26b	1810012I05Rik|2310075A12Rik|AI848392	VPS26 retromer complex component B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90964956-3	chr2	90964459	90965459	+	690.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001244891, intron 2 of 14)	intron (NM_001244891, intron 2 of 14)	24562.0	NM_017368	13046.0	Mm.29495	NM_017368	ENSMUSG00000005506	Celf1	1600010O03Rik|AA407467|Brunol2|CUG-BP|CUG-BP1|CUGBP|Cugbp1|D2Wsu101e|HNAB50|NAB50	CUGBP, Elav-like family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86137826-3	chr15	86137359	86138359	+	690.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001205353)	TTS (NM_001205353)	-47869.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0.0	2.0	2.5	0.0	7.0	4.0
Merged-chr4-139092955-3	chr4	139092450	139093450	+	690.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008675)	promoter-TSS (NM_008675)	20.0	NM_008675	17965.0	Mm.9404	NM_008675	ENSMUSG00000041120	Nbl1	D4H1S1733E|DAN|Dana|NO3	neuroblastoma, suppression of tumorigenicity 1	protein-coding	6.0	1.5	1.0	1.5	0.0	4.5
Merged-chr10-82863453-4	chr10	82862949	82863949	+	690.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042513, intron 2 of 14)	intron (NM_001042513, intron 2 of 14)	3108.0	NM_001042514	50493.0	Mm.210155	NM_015762	ENSMUSG00000020250	Txnrd1	TR|TR1|TrxR1	thioredoxin reductase 1	protein-coding	0.0	4.5	12.5	0.0	0.0	9.5
Merged-chr13-45883210-3	chr13	45882772	45883772	+	690.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	81719.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146641833-4	chr6	146641215	146642215	+	690.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025315)	promoter-TSS (NM_025315)	-864.0	NM_025315	108098.0	Mm.26212	NM_025315	ENSMUSG00000030291	Med21	0610007L03Rik|AI449604|D19234|D6Ertd782e|Srb7|Surb7	mediator complex subunit 21	protein-coding	1.5	5.0	7.5	0.0	7.0	2.0
Merged-chr2-167793842-3	chr2	167793373	167794373	+	690.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	102696.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-90132640-3	chr15	90132156	90133156	+	690.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91655.0	NM_001033441	380959.0	Mm.17853	NM_001033441	ENSMUSG00000075470	Alg10b	AA469671|AU045404|AW123895|C85569|Deaf1|Gm917|nse5	asparagine-linked glycosylation 10B (alpha-1,2-glucosyltransferase)	protein-coding	5.5	14.5	1.5	7.0	7.5	3.5
Merged-chr1-131765789-3	chr1	131765316	131766316	+	690.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177243, intron 18 of 20)	intron (NM_177243, intron 18 of 20)	21794.0	NM_177243	320718.0	Mm.482704	NM_177243	ENSMUSG00000042268	Slc26a9	E030002L01Rik	solute carrier family 26, member 9	protein-coding	2.0	3.5	2.0	10.5	3.5	6.0
Merged-chr13-112397572-4	chr13	112396981	112397981	+	690.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66589.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	13.5	29.0	18.5	24.5	36.5	11.5
Merged-chr12-55506161-4	chr12	55505655	55506655	+	690.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13508.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-113167336-3	chr7	113166841	113167841	+	690.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25326.0	NR_045978	75239.0	Mm.381688	NR_045978	ENSMUSG00000110009	4930543E12Rik	4930545H14Rik	RIKEN cDNA 4930543E12 gene	ncRNA	0.0	3.0	3.5	11.0	0.0	3.5
Merged-chr7-104218844-4	chr7	104218319	104219319	+	690.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013616)	promoter-TSS (NM_001013616)	24.0	NM_001013616	94088.0	Mm.274843	NM_001013616	ENSMUSG00000072244	Trim6	C430046K18Rik|D7Ertd684e	tripartite motif-containing 6	protein-coding	7.0	5.0	0.0	2.0	0.0	0.5
Merged-chr17-37275475-2	chr17	37275017	37276017	+	690.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4901.0	NM_146515	258508.0	Mm.377544	NM_146515	ENSMUSG00000061972	Olfr99	MOR156-1	olfactory receptor 99	protein-coding	7.5	31.0	26.5	8.5	15.0	13.5
Merged-chr4-134129662-4	chr4	134129161	134130161	+	690.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080559)	promoter-TSS (NM_080559)	-908.0	NM_080559	73723.0	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	18.5	50.5	28.0	8.5	5.5	5.0
Merged-chr5-43662683-4	chr5	43662137	43663137	+	690.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359906, intron 1 of 37)	intron (NM_001359906, intron 1 of 37)	258.0	NM_001359903	231214.0	Mm.44434	NM_172274	ENSMUSG00000039765	Cc2d2a	5730509K17Rik|b2b1035Clo	coiled-coil and C2 domain containing 2A	protein-coding	0.0	0.0	4.5	1.5	9.0	5.5
Merged-chr16-68675208-2	chr16	68674708	68675708	+	690.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F3|LINE|L1	-1054300.0	NM_178721	239857.0	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117811077-2	chr10	117810577	117811577	+	690.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18372.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	2.0	0.0	0.0	3.0	3.0	0.0
Merged-chr14-61438552-3	chr14	61438051	61439051	+	690.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008466, intron 1 of 16)	intron (NM_008466, intron 1 of 16)	1396.0	NM_008466	16648.0	Mm.25548	NM_008466	ENSMUSG00000021929	Kpna3	IPOA4	karyopherin (importin) alpha 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-114778301-3	chr9	114777822	114778822	+	690.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252479, intron 1 of 3)	L1MB8|LINE|L1	3671.0	NM_133978	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	11.5	49.5	31.0	6.5	27.5	18.0
Merged-chr7-99071467-4	chr7	99070986	99071986	+	690.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 5 of 14)	L1_Mus4|LINE|L1	69658.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	6.5	16.5	3.0	4.0	0.0	0.5
Merged-chr19-33178629-3	chr19	33178133	33179133	+	690.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146342, intron 3 of 4)	RMER13B|LTR|ERVK	21521.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10321682-3	chr17	10321207	10322207	+	690.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_037588)	TTS (NR_037588)	1788.0	NR_037588	100526796.0	Mm.384135	NR_037588		Cahm	B930003M22Rik	colon adenocarcinoma hypermethylated RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90163404-3	chr9	90162960	90163960	+	690.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003911, intron 1 of 23)	CpG	482.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0.0	1.0	0.0	2.0	0.0	1.5
Merged-chr4-155250827-2	chr4	155250327	155251327	+	690.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_001190445, exon 3 of 4)	exon (NM_001190445, exon 3 of 4)	861.0	NR_033802	67513.0	Mm.10374	NM_001190445	ENSMUSG00000073684	Faap20	2610002J02Rik	Fanconi anemia core complex associated protein 20	protein-coding	5.0	2.5	6.5	4.5	5.0	9.5
Merged-chr4-148677166-2	chr4	148676666	148677666	+	690.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33849.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	3.5	39.5	12.5	2.0	6.5	0.5
Merged-chr17-69969303-2	chr17	69968803	69969803	+	690.166626	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001347412, exon 1 of 14)	5' UTR (NM_001347412, exon 1 of 14)	230.0	NM_001347411	224997.0	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	DLG associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90032276-5	chr7	90031769	90032769	+	690.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 1 of 5)	MTE-int|LTR|ERVL-MaLR	3110.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	11.0	25.0	18.0	25.0	52.5	15.5
Merged-chr13-56592108-3	chr13	56591613	56592613	+	690.133301	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-17473.0	NM_009369	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112416644-4	chr13	112416165	112417165	+	690.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47405.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-17989757-2	chr2	17989257	17990257	+	690.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7201.0	NM_026627	68231.0	Mm.23887	NM_026627	ENSMUSG00000062651	H2al2a	1700113O17Rik|H2A.Bbd|H2A.L.2|H2afb1|H2al2|TSEG-1|Tseg1	H2A histone family member L2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55665323-4	chr1	55664804	55665804	+	690.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	259358.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	53.0	30.5	36.5	5.0	18.0	11.5
Merged-chr5-135461942-2	chr5	135461442	135462442	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	PB1D11|SINE|Alu	-67396.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-88823183-2	chr11	88822722	88823722	+	690.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28281.0	NM_009648	11640.0	Mm.2969	NM_009648	ENSMUSG00000018428	Akap1	AKAP121|AKAP84|Akap|C76494|C81186|DAKAP1|S-AKAP84	A kinase (PRKA) anchor protein 1	protein-coding	4.0	23.0	1.0	1.5	4.5	5.0
Merged-chr9-58631243-2	chr9	58630743	58631743	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357751, intron 4 of 8)	B4A|SINE|B4	49003.0	NM_001357751	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60742853-2	chr18	60742353	60743353	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	3893.0	NM_001348101	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	3.5	2.5	15.0	0.0	4.5	8.0
Merged-chr16-83001006-2	chr16	83000506	83001506	+	690.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-1370137.0	NR_040567	75247.0	Mm.417813	NR_040567		4930553E22Rik	-	RIKEN cDNA 4930553E22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34954036-2	chr17	34953536	34954536	+	690.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1565.0	NR_015536	68763.0	Mm.28895	NR_015536	ENSMUSG00000092203	1110038B12Rik	0610009C20Rik|0910001G04Rik	RIKEN cDNA 1110038B12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80008255-2	chr7	80007755	80008755	+	690.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-16559.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156418852-1	chr1	156418352	156419352	+	690.0	f1_c57bl6.idr	intron (NM_001346967, intron 3 of 25)	PB1D7|SINE|Alu	2063.0	NM_001346967	77352.0	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	0.5	4.5	0.5	11.0	5.5	0.5
Merged-chr15-73787303-2	chr15	73786803	73787803	+	690.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033365, exon 11 of 11)	3' UTR (NM_001033365, exon 11 of 11)	22630.0	NM_001362047	100041273.0	Mm.379154	NM_001362047		Gm3244	-	predicted pseudogene 3244	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100152460-2	chr15	100151960	100152960	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 5 of 37)	intron (NM_001159361, intron 5 of 37)	-1936.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107280026-2	chr13	107279526	107280526	+	690.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-189796.0	NR_045083	105120.0	Mm.417700	NR_045083	ENSMUSG00000114780	AI197445	-	expressed sequence AI197445	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-71942649-2	chr9	71942149	71943149	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011544, intron 6 of 20)	Tigger7|DNA|TcMar-Tigger	-46553.0	NM_001253863	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-20752346-2	chr15	20751846	20752846	+	690.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-85596.0	NM_022816	64833.0	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119835238-3	chr8	119834697	119835697	+	690.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	5382.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126567100-2	chr8	126566604	126567604	+	690.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	26332.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.0	0.0	1.5	3.0	17.0	3.0
Merged-chr16-97964356-2	chr16	97963856	97964856	+	690.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1734.0	NM_001320385	114565.0	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding	0.0	0.0	2.5	0.0	0.0	2.0
Merged-chr16-57284920-2	chr16	57284420	57285420	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027651, intron 2 of 7)	L1_Mus3|LINE|L1	7931.0	NM_027651	71027.0	Mm.158563	NM_027651	ENSMUSG00000022753	Tmem30c	4933401B01Rik|4933409A18Rik|Cdc50c	transmembrane protein 30C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120032364-1	chr11	120031864	120032864	+	690.0	f1_c57bl6.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	9417.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	0.0	0.0	1.0	0.0	0.0	1.5
Merged-chr1-57430918-1	chr1	57430418	57431418	+	690.0	f0_balb.idr	Intergenic	Intergenic	-24244.0	NM_001302963	68736.0	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-94311660-2	chr3	94311160	94312160	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029431, intron 1 of 5)	intron (NM_029431, intron 1 of 5)	1528.0	NM_029431	75778.0	Mm.45092	NM_029431	ENSMUSG00000028145	Them4	2700077M13Rik|4921507I02Rik	thioesterase superfamily member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81311762-2	chr10	81311262	81312262	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 9 of 17)	intron (NM_001293647, intron 9 of 17)	-9341.0	NM_027381	70312.0	Mm.87628	NM_027381	ENSMUSG00000034889	Cactin	2510012J08Rik	cactin, spliceosome C complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95743605-2	chr16	95743105	95744105	+	690.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	41198.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99708881-3	chr7	99708369	99709369	+	690.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175316, intron 1 of 13)	intron (NM_175316, intron 1 of 13)	-2027.0	NM_001252530	101488.0	Mm.11249	NM_175316	ENSMUSG00000030737	Slco2b1	AI060904|AI852653|OATP-B|Slc21a9	solute carrier organic anion transporter family, member 2b1	protein-coding	0.0	1.0	0.0	0.0	2.0	0.5
Merged-chr8-72483312-2	chr8	72482812	72483812	+	690.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177766, exon 6 of 6)	3' UTR (NM_177766, exon 6 of 6)	-8079.0	NM_138585	27967.0	Mm.30136	NM_138585	ENSMUSG00000052488	Cherp	5730408I11Rik|D8Wsu96e|DAN16|Scaf6	calcium homeostasis endoplasmic reticulum protein	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr7-26264052-3	chr7	26263556	26264556	+	690.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2775.0	NM_001167540	100312477.0	Mm.480246	NM_001167540	ENSMUSG00000046130	Vmn1r184	-	vomeronasal 1 receptor, 184	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86244218-2	chr12	86243718	86244718	+	690.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001324488, exon 2 of 9)	exon (NM_001324488, exon 2 of 9)	2360.0	NM_001324488	70373.0	Mm.252967	NM_027405	ENSMUSG00000021254	Gpatch2l	1700020O03Rik|4732487G21Rik|A630090I05Rik|Kiaa1152	G patch domain containing 2 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19314183-2	chr7	19313683	19314683	+	690.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4138.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-83101615-1	chr10	83101115	83102115	+	690.0	f0_balb.idr	intron (NM_021439, intron 2 of 2)	intron (NM_021439, intron 2 of 2)	116118.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50132607-2	chr11	50132107	50133107	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029745, intron 1 of 20)	intron (NM_029745, intron 1 of 20)	1247.0	NM_029745	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95312602-2	chr3	95312102	95313102	+	690.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2588.0	NM_029789	76893.0	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20649108-2	chr18	20648608	20649608	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155534, intron 1 of 2)	intron (NR_155534, intron 1 of 2)	-16142.0	NM_013697	22139.0	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138205378-1	chr4	138204878	138205878	+	690.0	f1_balb.idr	intron (NM_001355700, intron 30 of 30)	B1_Mus1|SINE|Alu	-11234.0	NM_001122896	15441.0	Mm.348429	NM_010470	ENSMUSG00000028759	Hp1bp3	Hp1bp74	heterochromatin protein 1, binding protein 3	protein-coding	0.5	3.0	5.0	8.5	0.0	3.5
Merged-chr19-41375241-2	chr19	41374745	41375745	+	690.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	9825.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	2.0	10.5	11.5	0.0	13.0	11.0
Merged-chr6-29242429-2	chr6	29241929	29242929	+	690.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-26065.0	NM_001302934	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122633017-2	chr6	122632517	122633517	+	690.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6593.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	27.0	98.0	55.0	35.5	93.5	48.5
Merged-chr12-54414483-2	chr12	54413983	54414983	+	690.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23165.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-151008690-2	chr2	151008190	151009190	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207204, intron 1 of 23)	intron (NM_207204, intron 1 of 23)	708.0	NM_207204	78177.0	Mm.120911	NM_207204	ENSMUSG00000068115	Ninl	4930519N13Rik|Gm1004|Gm1634|mKIAA0980	ninein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10325750-2	chr17	10325250	10326250	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045461, intron 2 of 2)	intron (NR_045461, intron 2 of 2)	1148.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-100908401-1	chr8	100907901	100908901	+	690.0	f1_balb.idr	Intergenic	Lx4A|LINE|L1	1491727.0	NR_132435	234624.0	Mm.124595	NM_175479	ENSMUSG00000052479	A330008L17Rik	-	RIKEN cDNA A330008L17 gene	ncRNA	0.0	3.5	0.5	0.0	0.0	2.0
Merged-chr8-128436291-3	chr8	128435793	128436793	+	690.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358959, intron 6 of 16)	intron (NM_001358959, intron 6 of 16)	77052.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	26.5	30.0	17.0	5.0	18.0	23.0
Merged-chr19-13951561-2	chr19	13951061	13952061	+	690.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	32539.0	NM_001011850	258151.0	Mm.377361	NM_001011850	ENSMUSG00000062314	Olfr1505	MOR211-4P	olfactory receptor 1505	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86594119-2	chr11	86593619	86594619	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 10 of 11)	intron (NM_001356531, intron 10 of 11)	-9961.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-48308627-1	chr3	48308127	48309127	+	690.0	f0_balb.idr	Intergenic	Lx2A1|LINE|L1	-281868.0	NR_040408	666202.0	Mm.465057	NR_040408	ENSMUSG00000103257	Gm7977	EG666202	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide pseudogene	pseudo	0.0	3.5	0.0	2.0	11.0	6.0
Merged-chr10-78150061-2	chr10	78149561	78150561	+	690.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	19707.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90001917-2	chr3	90001417	90002417	+	690.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045749)	TTS (NR_045749)	3157.0	NR_045749	100503469.0	Mm.440636	NR_045749	ENSMUSG00000105552	Gm19710	-	predicted gene, 19710	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78461658-2	chr10	78461158	78462158	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172134, intron 1 of 10)	RMER1A|Other|Other	3290.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5594910-2	chr17	5594410	5595410	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	102310.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36714590-2	chr15	36714090	36715090	+	690.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76342.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-41463105-3	chr3	41462632	41463632	+	690.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30067.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116855157-2	chr11	116854657	116855657	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178620, intron 2 of 12)	intron (NM_178620, intron 2 of 12)	1157.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr4-141791768-1	chr4	141791268	141792268	+	690.0	f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-1124.0	NM_172338	214063.0	Mm.39102	NM_172338	ENSMUSG00000040697	Dnajc16	2900037O03Rik|4732437J24Rik|D030060M24|mKIAA0962	DnaJ heat shock protein family (Hsp40) member C16	protein-coding	13.0	14.0	6.5	12.0	14.5	7.0
Merged-chr11-100327311-2	chr11	100326811	100327811	+	690.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7096.0	NM_010257	14459.0	Mm.4767	NM_010257	ENSMUSG00000017165	Gast	GAS	gastrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29815400-1	chr7	29814900	29815900	+	690.0	f1_c57bl6.idr	promoter-TSS (NM_001145880)	promoter-TSS (NM_001145880)	-672.0	NM_146185	233056.0	Mm.224766	NM_146185	ENSMUSG00000011427	Zfp790	6330581L23Rik	zinc finger protein 790	protein-coding	6.5	13.5	4.0	7.0	18.5	6.0
Merged-chr15-31364183-1	chr15	31363683	31364683	+	690.0	f0_balb.idr	intron (NM_027496, intron 1 of 3)	intron (NM_027496, intron 1 of 3)	3576.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-67559168-1	chr11	67558668	67559668	+	690.0	f0_balb.idr	intron (NM_008088, intron 1 of 13)	intron (NM_008088, intron 1 of 13)	26170.0	NM_008088	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.0	0.0	3.5	1.5	2.0	0.0
Merged-chr3-8973439-1	chr3	8972939	8973939	+	690.0	f1_balb.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-9293.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	23.0	42.0	23.0	15.5	32.0	20.5
Merged-chr4-133585055-1	chr4	133584555	133585555	+	690.0	f0_balb.idr	TTS (NM_172876)	TTS (NM_172876)	682.0	NM_133884	100210.0	Mm.274001	NM_133884	ENSMUSG00000028848	Gpn2	AI838661|Atpbd1b|R74630	GPN-loop GTPase 2	protein-coding	13.5	6.0	7.5	7.5	21.5	14.0
Merged-chr2-121276322-1	chr2	121275822	121276822	+	690.0	f1_c57bl6.idr	Intergenic	Intergenic	-4915.0	NM_013735	27223.0	Mm.215389	NM_013735	ENSMUSG00000043909	Trp53bp1	53BP1|Tp53bp1|m53BP1|p53BP1	transformation related protein 53 binding protein 1	protein-coding	0.0	0.5	0.5	2.0	2.5	2.0
Merged-chr3-144587289-1	chr3	144586789	144587789	+	690.0	f0_balb.idr	intron (NM_053102, intron 2 of 4)	L1MB3|LINE|L1	16862.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-91683064-1	chr3	91682564	91683564	+	690.0	f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-331519.0	NM_207247	242100.0	Mm.297406	NM_207247	ENSMUSG00000042244	Pglyrp3	Gm420	peptidoglycan recognition protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr1-88585551-2	chr1	88585051	88586051	+	690.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	34034.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119297522-1	chr2	119297022	119298022	+	690.0	f1_c57bl6.idr	exon (NM_172269, exon 5 of 5)	exon (NM_172269, exon 5 of 5)	8780.0	NM_172269	228545.0	Mm.294761	NM_172269	ENSMUSG00000034216	Vps18	9930024E13Rik	VPS18 CORVET/HOPS core subunit	protein-coding	0.0	7.0	1.0	2.0	2.0	2.0
Merged-chr1-131020648-2	chr1	131020148	131021148	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010548, intron 1 of 4)	intron (NM_010548, intron 1 of 4)	803.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123292934-1	chr8	123292434	123293434	+	690.0	f1_balb.idr	intron (NM_016925, intron 20 of 42)	ORR1B1|LTR|ERVL-MaLR	25642.0	NM_016925	14087.0	Mm.6536	NM_016925	ENSMUSG00000032815	Fanca	AW208693|FACA	Fanconi anemia, complementation group A	protein-coding	0.0	0.5	2.5	4.0	9.0	0.0
Merged-chr18-64466893-2	chr18	64466393	64467393	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007998, intron 6 of 10)	intron (NM_007998, intron 6 of 10)	22205.0	NM_007998	14151.0	Mm.1070	NM_007998	ENSMUSG00000024588	Fech	AI894116|Fcl|fch	ferrochelatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23809106-2	chr17	23808606	23809606	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175229, intron 3 of 13)	B1_Mus2|SINE|Alu	5919.0	NM_175229	75956.0	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	1.0	5.0	4.0	0.0	4.0	2.5
Merged-chr15-101220666-1	chr15	101220166	101221166	+	690.0	f1_balb.idr	promoter-TSS (NR_045996)	promoter-TSS (NR_045996)	-581.0	NR_045996	105968.0	Mm.120798	NR_045996	ENSMUSG00000115944	AU021063	-	expressed sequence AU021063	ncRNA	4.5	5.0	1.5	0.0	1.0	1.5
Merged-chr19-46392300-4	chr19	46391782	46392782	+	689.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016860, intron 1 of 10)	B3|SINE|B2	3453.0	NM_016860	54130.0	Mm.3118	NM_016860	ENSMUSG00000025228	Actr1a	Arp1|alpha-Arp1	ARP1 actin-related protein 1A, centractin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62810790-3	chr9	62810291	62811291	+	689.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010193, intron 1 of 1)	intron (NM_010193, intron 1 of 1)	857.0	NM_010193	14155.0	Mm.24069	NM_010193	ENSMUSG00000032244	Fem1b	mKIAA0396	feminization 1 homolog b (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24616771-4	chr13	24616256	24617256	+	689.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178658, intron 1 of 13)	intron (NM_178658, intron 1 of 13)	2150.0	NM_178658	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24103503-4	chr10	24102992	24103992	+	689.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1541.0	NM_001010840	494546.0	Mm.379739	NM_001010840	ENSMUSG00000100004	Taar8c	taR-8c	trace amine-associated receptor 8C	protein-coding	0.5	0.0	0.0	1.0	0.0	0.0
Merged-chr2-155071230-3	chr2	155070708	155071708	+	689.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016661, intron 1 of 9)	L2|LINE|L2	3289.0	NM_016661	269378.0	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	0.5	1.0	3.5	3.5	0.0	2.5
Merged-chr9-43984923-2	chr9	43984423	43985423	+	689.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58461.0	NM_009382	21838.0	Mm.3951	NM_009382	ENSMUSG00000032011	Thy1	CD90|T25|Thy-1|Thy-1.2|Thy1.1|Thy1.2	thymus cell antigen 1, theta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29248518-2	chr19	29248018	29249018	+	689.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-3285.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19922157-3	chr7	19921666	19922666	+	689.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1023.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-14082580-4	chr10	14082047	14083047	+	689.758301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010437, intron 2 of 8)	LTR88b|LTR|Gypsy?	116168.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.0	0.0	1.0	0.0	6.0	0.5
Merged-chr8-72418069-2	chr8	72417571	72418571	+	689.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122832, intron 1 of 15)	B3|SINE|B2	3403.0	NM_001122832	13859.0	Mm.288894	NM_007944	ENSMUSG00000006276	Eps15l1	9830147J04Rik|AI593686|Eps15-rs|Eps15R	epidermal growth factor receptor pathway substrate 15-like 1	protein-coding	4.5	22.5	9.5	5.0	22.5	2.0
Merged-chr1-94681009-4	chr1	94680502	94681502	+	689.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-116440.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58955763-2	chr11	58955263	58956263	+	689.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178218)	TTS (NM_178218)	1078.0	NM_178218	319162.0	Mm.212549	NM_178218	ENSMUSG00000078851	Hist3h2a	-	histone cluster 3, H2a	protein-coding	116.0	279.5	160.5	81.0	142.5	119.5
Merged-chr15-81097667-2	chr15	81097209	81098209	+	689.75	f0_balb.idr|f1_balb.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	7338.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0.0	0.5	0.0	0.0	0.0	1.5
Merged-chr5-113122526-3	chr5	113122020	113123020	+	689.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172884, intron 1 of 7)	MIR|SINE|MIR	16065.0	NM_001347397	243219.0	Mm.160131	NM_172884	ENSMUSG00000051339	2900026A02Rik	8430408O14Rik|A530094D01|AW539426|Gm449|Kiaa1671|mKIAA1671	RIKEN cDNA 2900026A02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-26438338-3	chr14	26437869	26438869	+	689.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 16 of 22)	intron (NM_001310445, intron 16 of 22)	80822.0	NR_038005	71106.0	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79811893-3	chr3	79811342	79812342	+	689.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30820.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	0.0	3.0	0.0	0.0	3.0	1.0
Merged-chr2-52420162-3	chr2	52419646	52420646	+	689.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182994, intron 1 of 5)	intron (NM_182994, intron 1 of 5)	4728.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-157567512-2	chr3	157567012	157568012	+	689.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_011196, exon 1 of 3)	exon (NM_011196, exon 1 of 3)	620.0	NM_011196	19218.0	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127115550-2	chr10	127115050	127116050	+	689.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_177614, intron 5 of 13)	MT2B|LTR|ERVL	5610.0	NM_177614	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81484980-2	chr10	81484480	81485480	+	689.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2271.0	NM_001311124	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31376625-2	chr3	31376125	31377125	+	689.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66306.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23383187-3	chr16	23382668	23383668	+	689.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45965.0	NM_001004151	239766.0	Mm.208751	NM_001004151	ENSMUSG00000033383	Rtp1	Gm1766|Gm604	receptor transporter protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27970420-3	chr17	27969923	27970923	+	689.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	61117.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86243497-2	chr12	86242997	86243997	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027405, intron 1 of 9)	intron (NM_027405, intron 1 of 9)	1639.0	NM_001324488	70373.0	Mm.252967	NM_027405	ENSMUSG00000021254	Gpatch2l	1700020O03Rik|4732487G21Rik|A630090I05Rik|Kiaa1152	G patch domain containing 2 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-118552310-2	chr1	118551810	118552810	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359330, intron 30 of 39)	intron (NM_001359330, intron 30 of 39)	-75635.0	NM_023755	81879.0	Mm.24621	NM_023755	ENSMUSG00000026380	Tfcp2l1	1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1	transcription factor CP2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8622358-2	chr11	8621858	8622858	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	42177.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-137557009-2	chr6	137556509	137557509	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271588, intron 1 of 20)	MTEb|LTR|ERVL-MaLR	14000.0	NM_001271595	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20332132-1	chr11	20331632	20332632	+	689.5	f0_balb.idr	exon (NM_018861, exon 1 of 8)	exon (NM_018861, exon 1 of 8)	581.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr4-87485443-2	chr4	87484943	87485943	+	689.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-254903.0	NM_172426	76376.0	Mm.490487	NM_172426	ENSMUSG00000037996	Slc24a2	2810021B17Rik|6330417K15Rik|AI847460|Nckx2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9644944-2	chr4	9644444	9645444	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	-1227.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0.0	8.0	7.5	0.0	3.5	2.5
Merged-chr8-13426758-2	chr8	13426258	13427258	+	689.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8701.0	NM_001143671	272465.0	Mm.250502	NM_001143671	ENSMUSG00000038457	Tmem255b	Fam70b|Gm687	transmembrane protein 255B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-122897184-3	chr4	122896691	122897691	+	689.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-11115.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	5.5	8.0	12.0	4.0	6.0	0.5
Merged-chr5-24526342-2	chr5	24525842	24526842	+	689.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_015739, exon 1 of 2)	exon (NM_015739, exon 1 of 2)	506.0	NM_015739	231044.0	Mm.246596	NM_015739	ENSMUSG00000067724	Gbx1	Gbx-1	gastrulation brain homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-103659239-2	chr5	103658739	103659739	+	689.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3507.0	NM_001163550	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124732497-2	chr6	124731997	124732997	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077705, intron 2 of 15)	intron (NM_001077705, intron 2 of 15)	657.0	NM_013545	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-106027094-2	chr14	106026594	106027594	+	689.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79104.0	NM_198601	212085.0	Mm.78128	NM_198601	ENSMUSG00000022113	Trim52	4921513B05Rik	tripartite motif-containing 52	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75052737-2	chr10	75052237	75053237	+	689.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001359271, exon 11 of 11)	3' UTR (NM_001359271, exon 11 of 11)	-8159.0	NM_001081412	110279.0	Mm.333722	NM_001081412	ENSMUSG00000009681	Bcr	5133400C09Rik|AI561783|AI853148|mKIAA3017	breakpoint cluster region	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-78235133-2	chr16	78234633	78235633	+	689.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20321.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76649367-2	chr11	76648867	76649867	+	689.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-23103.0	NM_177182	320522.0	Mm.131585	NM_177182	ENSMUSG00000044243	Bhlha9	A830053O21Rik|Fingerin	basic helix-loop-helix family, member a9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55255427-2	chr19	55254927	55255927	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027976, intron 1 of 21)	intron (NM_027976, intron 1 of 21)	2058.0	NM_027976	433256.0	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112894072-2	chr12	112893572	112894572	+	689.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26469.0	NR_105906	102465567.0		NR_105906	ENSMUSG00000098338	Mir6941	Gm27923|mmu-mir-6941	microRNA 6941	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13601775-2	chr8	13601275	13602275	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 4 of 23)	intron (NM_009025, intron 4 of 23)	-39314.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20661849-2	chr11	20661349	20662349	+	689.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29872.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	2.5	0.0	1.0	2.0	1.0	0.0
Merged-chr15-63740829-2	chr15	63740335	63741335	+	689.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67904.0	NM_031378	83492.0	Mm.335619	NM_031378	ENSMUSG00000079025	Gsdmc	Gsdmc1|Mlze	gasdermin C	protein-coding	3.0	0.0	0.0	0.0	4.0	0.0
Merged-chr19-10173139-3	chr19	10172655	10173655	+	689.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-9733.0	NM_146094	76267.0	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	6.5	25.0	18.5	5.5	63.0	49.5
Merged-chr2-155374097-2	chr2	155373597	155374597	+	689.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7759.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	1.0	5.5	16.5	9.0	12.5	6.0
Merged-chr2-30059232-2	chr2	30058732	30059732	+	689.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2764.0	NM_023871	56086.0	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-80714021-2	chr1	80713521	80714521	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	44532.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77289821-2	chr10	77289321	77290321	+	689.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_004429)	TTS (NR_004429)	30521.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9127294-2	chr4	9126794	9127794	+	689.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-141999.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125484765-2	chr7	125484242	125485242	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360659, intron 2 of 7)	B1_Mus2|SINE|Alu	6800.0	NM_001360659	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	21.0	47.0	19.0	10.0	21.0	32.0
Merged-chr9-66358811-2	chr9	66358311	66359311	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145617, intron 1 of 77)	PB1D7|SINE|Alu	8361.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61129804-2	chr18	61129304	61130304	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 20 of 21)	intron (NM_001037859, intron 20 of 21)	12336.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28391544-2	chr17	28391044	28392044	+	689.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26328.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33960481-2	chr17	33959981	33960981	+	689.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357330, exon 10 of 20)	exon (NM_001357330, exon 10 of 20)	4391.0	NM_001357329	224705.0	Mm.448614	NM_172620	ENSMUSG00000024319	Vps52	ARE1|D130068D18|D430041K17Rik|SAC2|Sacm2l|tclw5	VPS52 GARP complex subunit	protein-coding	2.0	2.5	5.5	0.0	0.0	2.0
Merged-chr3-9835105-2	chr3	9834654	9835654	+	689.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-1475.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.5	2.0	3.0	0.0	2.5	0.0
Merged-chr4-92631878-2	chr4	92631378	92632378	+	689.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-484657.0	NM_027034	69314.0	Mm.55891	NM_027034	ENSMUSG00000028533	Izumo3	1700011H22Rik	IZUMO family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-119919455-2	chr1	119918984	119919984	+	689.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6316.0	NM_175106	66343.0	Mm.49942	NM_175106	ENSMUSG00000036975	Tmem177	2300008B03Rik	transmembrane protein 177	protein-coding	15.5	5.5	0.0	1.5	1.5	0.0
Merged-chr7-4032233-2	chr7	4031733	4032733	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302675, intron 2 of 6)	Lx5b|LINE|L1	30971.0	NM_001302677	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	4.5	7.5	7.0	7.5	1.0	4.5
Merged-chr2-165902447-2	chr2	165901947	165902947	+	689.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-17609.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	7.5	9.0	5.0	4.0	1.0	5.0
Merged-chr4-117883298-2	chr4	117882798	117883798	+	689.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045570, exon 1 of 9)	non-coding (NR_045570, exon 1 of 9)	178.0	NR_045570	53418.0	Mm.123843	NM_017377	ENSMUSG00000028541	B4galt2	Ggtb2	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29467390-2	chr19	29466890	29467890	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	MLTR18C_MM|LTR|ERVK	54597.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80063069-2	chr10	80062569	80063569	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359635, intron 17 of 31)	intron (NM_001359635, intron 17 of 31)	9050.0	NM_001037741	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152344729-2	chr2	152344229	152345229	+	689.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175093)	promoter-TSS (NM_175093)	-669.0	NM_175093	228775.0	Mm.276018	NM_144554	ENSMUSG00000032715	Trib3	Ifld2|Nipk|SINK|SKIP3|TRB-3|Trb3	tribbles pseudokinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32674431-2	chr9	32673931	32674931	+	689.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21611.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55467360-2	chr13	55466860	55467860	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001030296, intron 1 of 2)	intron (NM_001030296, intron 1 of 2)	3093.0	NM_001030296	432763.0	Mm.315457	NM_001030296	ENSMUSG00000034686	Prr7	XM_484263	proline rich 7 (synaptic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111812074-2	chr12	111811574	111812574	+	689.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_028875, exon 2 of 8)	exon (NM_028875, exon 2 of 8)	1805.0	NM_028875	74335.0	Mm.19082	NM_028875	ENSMUSG00000021287	Xrcc3	-	X-ray repair complementing defective repair in Chinese hamster cells 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98833489-2	chr15	98832989	98833989	+	689.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033276, exon 55 of 55)	3' UTR (NM_001033276, exon 55 of 55)	-1981.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27181872-2	chr17	27181372	27182372	+	689.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14108.0	NM_173027	271424.0	Mm.209679	NM_173027	ENSMUSG00000024210	Ip6k3	D830007E07Rik|Ihpk3	inositol hexaphosphate kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45530662-2	chr7	45530162	45531162	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_148927, intron 2 of 19)	intron (NM_148927, intron 2 of 19)	4332.0	NM_148927	69217.0	Mm.274158	NM_148927	ENSMUSG00000040428	Plekha4	2410005C22Rik|C88169|Pepp1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-35661177-2	chr11	35660677	35661677	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011412, intron 24 of 35)	intron (NM_011412, intron 24 of 35)	44361.0	NR_029799	723924.0		NR_029799	ENSMUSG00000065583	Mir218-2	Mirn218-2|mir-218-2	microRNA 218-2	ncRNA	2.0	0.0	0.0	3.5	0.0	0.0
Merged-chr2-11532373-3	chr2	11531865	11532865	+	689.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	21564.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115710172-2	chr11	115709687	115710687	+	689.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1590.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr11-52343377-4	chr11	52342869	52343869	+	689.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17493.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44646203-2	chr9	44645703	44646703	+	689.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27030.0	NM_001277851	58866.0	Mm.45380	NM_021481	ENSMUSG00000032098	Treh	2210412M19Rik	trehalase (brush-border membrane glycoprotein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23711458-2	chr13	23710958	23711958	+	689.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010424)	promoter-TSS (NM_010424)	-604.0	NM_010424	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-76844906-3	chr13	76844431	76845431	+	689.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030174, intron 15 of 20)	intron (NM_030174, intron 15 of 20)	290537.0	NM_134071	105377.0	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding	0.0	0.5	8.5	3.5	4.5	9.5
Merged-chr4-118143878-3	chr4	118143379	118144379	+	689.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161823, intron 18 of 21)	intron (NM_001161823, intron 18 of 21)	-8933.0	NM_001161774	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182368526-3	chr1	182368026	182369026	+	689.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26920.0	NM_175127	67948.0	Mm.30737	NM_175127	ENSMUSG00000047539	Fbxo28	4833428J17Rik|5730505P19Rik|D1Ertd578e|Fbx28|mKIAA0483	F-box protein 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-58398363-3	chr7	58397878	58398878	+	689.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-259824.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	14.0	25.5	24.0	16.0	11.5	12.0
Merged-chr4-57904477-3	chr4	57903977	57904977	+	689.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11787.0	NM_178727	242484.0	Mm.23214	NM_178727	ENSMUSG00000052117	D630039A03Rik	-	RIKEN cDNA D630039A03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107630141-3	chr9	107629685	107630685	+	689.277771	f1_balb.idr|f1_c57bl6.idr	intron (NM_008138, intron 1 of 8)	intron (NM_008138, intron 1 of 8)	5157.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	26.0	56.5	54.0	25.0	65.5	41.5
Merged-chr17-56480342-2	chr17	56479842	56480842	+	689.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3862.0	NM_011218	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-89069480-3	chr11	89068976	89069976	+	689.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4365.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	14.5	3.5	2.0	2.0	0.0	0.5
Merged-chr8-105770774-2	chr8	105770274	105771274	+	689.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145824, exon 14 of 14)	3' UTR (NM_145824, exon 14 of 14)	-12167.0	NM_027469	70575.0	Mm.40954	NM_027469	ENSMUSG00000013150	Gfod2	5730466C23Rik	glucose-fructose oxidoreductase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88513835-2	chr15	88513335	88514335	+	689.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-86467.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44549725-2	chr7	44549225	44550225	+	689.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011131)	promoter-TSS (NM_011131)	-910.0	NM_011131	18971.0	Mm.16549	NM_011131	ENSMUSG00000038644	Pold1	125kDa	polymerase (DNA directed), delta 1, catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11824575-2	chr19	11824075	11825075	+	689.25	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	4449.0	NM_146936	258938.0	Mm.451671	NM_146936	ENSMUSG00000048292	Olfr1417	MOR266-2	olfactory receptor 1417	protein-coding	3.0	24.0	12.0	13.5	4.5	6.5
Merged-chr15-83038707-2	chr15	83038207	83039207	+	689.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-5310.0	NM_001271411	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66804717-3	chr15	66804219	66805219	+	689.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029841, intron 1 of 7)	intron (NM_001029841, intron 1 of 7)	27110.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-58033516-3	chr18	58032998	58033998	+	689.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010181, intron 55 of 64)	ORR1G|LTR|ERVL-MaLR	154820.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	0.0	0.5	0.5	0.0	0.5	1.0
Merged-chr9-21286725-6	chr9	21286226	21287226	+	689.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145416, intron 2 of 18)	intron (NM_145416, intron 2 of 18)	1243.0	NM_145416	215194.0	Mm.290690	NM_145416	ENSMUSG00000035047	Kri1	-	KRI1 homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-79257598-3	chr18	79257093	79258093	+	689.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-148202.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-37163337-2	chr14	37162841	37163841	+	689.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28019.0	NM_078478	66092.0	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83376844-2	chr6	83376344	83377344	+	689.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_183138, exon 6 of 11)	exon (NM_183138, exon 6 of 11)	24258.0	NR_105793	102465194.0		NR_105793	ENSMUSG00000099045	Mir6374	Gm27292|mmu-mir-6374	microRNA 6374	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89315302-2	chr3	89314802	89315802	+	689.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010108, exon 5 of 5)	3' UTR (NM_010108, exon 5 of 5)	7577.0	NM_010108	13638.0	Mm.331159	NM_010108	ENSMUSG00000028039	Efna3	AW494418|EFL-2|Ehk1-L|Epl3|LERK-3	ephrin A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65965211-3	chr18	65964730	65965730	+	689.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145493, intron 2 of 2)	intron (NM_145493, intron 2 of 2)	4948.0	NM_145493	225644.0	Mm.192285	NM_145493	ENSMUSG00000024519	Cplx4	A930004D23Rik|CPXIV|Gm957	complexin 4	protein-coding	0.0	0.0	0.0	0.0	1.5	4.0
Merged-chr17-45759546-2	chr17	45759101	45760101	+	689.125	f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	25095.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	2.0	3.5	5.0	3.5	8.5	3.0
Merged-chr6-115897586-3	chr6	115897087	115898087	+	689.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167763, intron 14 of 28)	intron (NM_001167763, intron 14 of 28)	-34340.0	NM_145383	212541.0	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-42583727-3	chr6	42583218	42584218	+	689.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13654.0	NM_203396	403088.0	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4587827-3	chr16	4587320	4588320	+	689.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6893.0	NM_031184	83396.0	Mm.134072	NM_031184	ENSMUSG00000014303	Glis2	Gli5|Klf16|Nkl	GLIS family zinc finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150589562-1	chr4	150589062	150590062	+	689.0	f0_balb.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	62612.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-99329892-1	chr13	99329392	99330392	+	689.0	f1_c57bl6.idr	intron (NM_026873, intron 7 of 9)	intron (NM_026873, intron 7 of 9)	14786.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	5.0	20.0	17.5	1.0	6.0	6.0
Merged-chr4-32486026-3	chr4	32485524	32486524	+	689.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109661, intron 1 of 4)	intron (NM_001109661, intron 1 of 4)	68589.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.0	6.0	0.0	1.0	2.5	0.0
Merged-chr12-102281017-2	chr12	102280517	102281517	+	689.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2057.0	NM_177620	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124658558-2	chr2	124658058	124659058	+	689.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172537, exon 12 of 17)	exon (NM_172537, exon 12 of 17)	4977.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64011297-2	chr7	64010797	64011797	+	689.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-72382.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0.0	0.0	6.0	0.0	0.0	3.0
Merged-chr17-35389897-1	chr17	35389397	35390397	+	689.0	f1_balb.idr	Intergenic	Intergenic	-4202.0	NR_051981	15016.0	Mm.439648	NR_051981	ENSMUSG00000055413	H2-Q5	H-2Q5|Qa-5|Qa5|Qat-5	histocompatibility 2, Q region locus 5	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-18721552-2	chr13	18721052	18722052	+	689.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 1 of 28)	L1M3|LINE|L1	4260.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	10.0	7.0	5.0	3.0	0.5	2.0
Merged-chr14-105499676-2	chr14	105499176	105500176	+	689.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045921, intron 1 of 2)	intron (NR_045921, intron 1 of 2)	888.0	NR_045921	74864.0	Mm.159344	NR_045921	ENSMUSG00000022116	4930449E01Rik	-	RIKEN cDNA 4930449E01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72869935-2	chr5	72869435	72870435	+	689.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1487.0	NM_001113460	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0.0	2.5	0.5	0.0	2.5	0.5
Merged-chr3-122372102-1	chr3	122371602	122372602	+	689.0	f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	-47655.0	NM_013867	29815.0	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	6.5	4.0	1.0	3.0	7.5	2.0
Merged-chr5-147575861-1	chr5	147575361	147576361	+	689.0	f1_balb.idr	intron (NM_010228, intron 25 of 29)	intron (NM_010228, intron 25 of 29)	145705.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	3.0	0.0	3.0	1.0	12.0	1.0
Merged-chr10-128914371-2	chr10	128913871	128914871	+	689.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358527, intron 3 of 4)	intron (NM_001358527, intron 3 of 4)	4505.0	NM_007653	12512.0	Mm.371552	NM_007653	ENSMUSG00000025351	Cd63	C75951|ME491|Tspan30	CD63 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133222638-1	chr4	133222138	133223138	+	689.0	f1_c57bl6.idr	intron (NM_027152, intron 4 of 5)	intron (NM_027152, intron 4 of 5)	1829.0	NM_027152	69655.0	Mm.285685	NM_027152	ENSMUSG00000028865	Cd164l2	2310047N01Rik	CD164 sialomucin-like 2	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr14-117141464-1	chr14	117140964	117141964	+	689.0	f1_c57bl6.idr	intron (NM_011821, intron 1 of 8)	intron (NM_011821, intron 1 of 8)	216167.0	NM_011821	23888.0	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	0.0	3.0	0.0	0.0	0.0	8.5
Merged-chr15-30259747-2	chr15	30259247	30260247	+	689.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 1 of 21)	intron (NM_001355502, intron 1 of 21)	87154.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-63893657-2	chr7	63893157	63894157	+	689.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-23200.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0.0	1.0	0.5	0.0	0.0	1.5
Merged-chr8-105934844-2	chr8	105934344	105935344	+	689.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023182)	promoter-TSS (NM_023182)	-982.0	NM_023182	109660.0	Mm.2745	NM_023182	ENSMUSG00000031896	Ctrl	0910001G08Rik|1810004D15Rik|AV005227|Ctra-1|Ctra1|chymopasin|mFLJ00366	chymotrypsin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-79661322-1	chr7	79660822	79661822	+	689.0	f1_c57bl6.idr	intron (NM_029835, intron 1 of 21)	intron (NM_029835, intron 1 of 21)	1126.0	NM_029835	77011.0	Mm.28132	NM_029835	ENSMUSG00000046591	Ticrr	5730590G19Rik|BC028450|Lrrk1	TOPBP1-interacting checkpoint and replication regulator	protein-coding	7.5	5.0	0.0	2.0	0.0	1.0
Merged-chr14-64667178-1	chr14	64666678	64667678	+	689.0	f0_balb.idr	intron (NM_001081177, intron 1 of 39)	intron (NM_001081177, intron 1 of 39)	14647.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	0.0	6.0	2.0	1.0	1.0	1.5
Merged-chr7-101455193-1	chr7	101454693	101455693	+	689.0	f0_balb.idr	promoter-TSS (NR_152194)	promoter-TSS (NR_152194)	-869.0	NR_152194	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	1.5	1.5	0.0	0.0	0.0	0.0
Merged-chr11-70531365-1	chr11	70530865	70531865	+	689.0	f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	6008.0	NM_008946	19175.0	Mm.98	NM_008946	ENSMUSG00000018286	Psmb6	Lmp19|Mpnd	proteasome (prosome, macropain) subunit, beta type 6	protein-coding	0.0	4.5	2.0	0.0	1.5	1.0
Merged-chr5-76486318-1	chr5	76485818	76486818	+	689.0	f0_balb.idr	intron (NR_033501, intron 1 of 2)	intron (NR_033501, intron 1 of 2)	2241.0	NR_033501	639545.0	Mm.478255	NR_033501	ENSMUSG00000091204	Gm7271	EG639545	predicted gene 7271	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-108030367-1	chr5	108029867	108030867	+	689.0	f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-35307.0	NM_001359088	17765.0	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	0.0	8.0	1.0	0.0	9.0	5.0
Merged-chr1-173933609-1	chr1	173933109	173934109	+	689.0	f1_balb.idr	intron (NM_001302649, intron 6 of 9)	MMERVK10C-int|LTR|ERVK	8883.0	NM_001302649	15950.0	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Ifi203a|Ifi203b|Mndal	interferon activated gene 203	protein-coding	23.5	7.5	6.0	13.5	24.5	31.0
Merged-chr11-119489986-2	chr11	119489486	119490486	+	689.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153849, intron 1 of 3)	intron (NR_153849, intron 1 of 3)	1249.0	NR_153849	78439.0	Mm.440446	NR_153849	ENSMUSG00000109408	A930037H05Rik	Gm44935	RIKEN cDNA A930037H05 gene	ncRNA	8.0	9.5	3.0	0.5	20.5	4.0
Merged-chr17-65643501-2	chr17	65643001	65644001	+	689.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1297.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42146828-2	chr19	42146328	42147328	+	689.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183195)	promoter-TSS (NM_183195)	-561.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47529356-2	chr9	47528856	47529856	+	689.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310841)	promoter-TSS (NM_001310841)	-814.0	NM_001310841	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-77515942-1	chr1	77515442	77516442	+	689.0	f0_balb.idr	promoter-TSS (NM_007936)	promoter-TSS (NM_007936)	-854.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	1.0	2.0	0.0	3.5	0.0	0.0
Merged-chr4-101698131-2	chr4	101697631	101698631	+	689.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19276.0	NM_001122899	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149336434-2	chr4	149335934	149336934	+	689.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_131918)	TTS (NR_131918)	1795.0	NR_131918	74310.0	Mm.440455	NR_131918	ENSMUSG00000085286	Ube4bos3	1700121F15Rik	ubiquitination factor E4B, opposite strand 3	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-71106453-1	chr3	71105953	71106953	+	689.0	f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-299162.0	NR_040556	625901.0	Mm.366028	NR_040556	ENSMUSG00000097252	Gm6634	EG625901	predicted gene 6634	ncRNA	8.5	0.0	4.0	5.5	0.0	4.0
Merged-chr10-128096119-2	chr10	128095619	128096619	+	689.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054078, intron 1 of 29)	intron (NM_054078, intron 1 of 29)	3336.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10316744-2	chr17	10316244	10317244	+	689.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021881, intron 1 of 6)	intron (NM_021881, intron 1 of 6)	2617.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-24767286-1	chr1	24766786	24767786	+	689.0	f1_balb.idr	TTS (NM_001310483)	TTS (NM_001310483)	88368.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0.5	3.0	2.0	9.5	0.5	0.5
Merged-chr2-91933735-2	chr2	91933235	91934235	+	689.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166597, intron 31 of 31)	intron (NM_001166597, intron 31 of 31)	-1438.0	NM_010784	17242.0	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70259818-2	chr9	70259308	70260308	+	689.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	52458.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0.0	0.0	0.0	1.0	0.5	2.0
Merged-chr8-128268962-2	chr8	128268462	128269462	+	689.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9263.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121650650-2	chr8	121650150	121651150	+	689.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080855, intron 1 of 12)	intron (NM_080855, intron 1 of 12)	1283.0	NM_080855	142682.0	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113157295-1	chr12	113156795	113157795	+	689.0	f1_c57bl6.idr	exon (NM_134041, exon 3 of 8)	exon (NM_134041, exon 3 of 8)	874.0	NM_134041	104732.0	Mm.87616	NM_134041	ENSMUSG00000037466	Tedc1	4930427A07Rik|AA536649|mFLJ00116	tubulin epsilon and delta complex 1	protein-coding	3.0	2.0	1.5	8.5	3.5	7.5
Merged-chr2-145801546-2	chr2	145801046	145802046	+	689.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	15430.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27441433-1	chr7	27440933	27441933	+	689.0	f1_c57bl6.idr	intron (NM_032610, intron 2 of 35)	intron (NM_032610, intron 2 of 35)	5156.0	NM_032610	80297.0	Mm.459123	NM_032610	ENSMUSG00000011751	Sptbn4	1700022P15Rik|5830426A08Rik|ROSA62|SpbIV|Spnb4|dyn|lnd|nmf261|nmf379|qv	spectrin beta, non-erythrocytic 4	protein-coding	2.0	4.0	0.0	1.5	9.0	2.0
Merged-chr11-70846629-1	chr11	70846129	70847129	+	689.0	f1_c57bl6.idr	intron (NM_001291143, intron 2 of 18)	intron (NM_001291143, intron 2 of 18)	1868.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	3.5	54.0	29.0	17.5	19.5	14.0
Merged-chr14-25368540-2	chr14	25368040	25369040	+	689.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90645.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113955999-3	chr6	113955516	113956516	+	689.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009723, intron 2 of 21)	intron (NM_009723, intron 2 of 21)	-21335.0	NM_001347365	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84291440-3	chr17	84290932	84291932	+	689.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 29 of 37)	L1M4|LINE|L1	-103485.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-142601556-2	chr1	142601056	142602056	+	689.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1039141.0	NM_020025	26878.0	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23990769-1	chr17	23990269	23991269	+	689.0	f1_c57bl6.idr	Intergenic	RLTR20B5_MM|LTR|ERVK	7331.0	NM_133731	70835.0	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	3.0	0.0	0.0	1.5	2.0	0.0
Merged-chr2-157422059-1	chr2	157421559	157422559	+	689.0	f1_balb.idr	Intergenic	Intergenic	-2234.0	NM_009271	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	2.0	0.5
Merged-chr15-76456777-2	chr15	76456277	76457277	+	689.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198885)	promoter-TSS (NM_198885)	-661.0	NM_198885	20289.0	Mm.322821	NM_198885	ENSMUSG00000034161	Scx	BB114693|Bhlha41|Scl	scleraxis	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80252922-1	chr17	80252422	80253422	+	689.0	f0_balb.idr	intron (NM_198942, intron 15 of 22)	intron (NM_198942, intron 15 of 22)	28471.0	NM_001355458	67242.0	Mm.279985	NM_026053	ENSMUSG00000055760	Gemin6	2610019B15Rik|2810470M17Rik	gem nuclear organelle associated protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-113551857-2	chr10	113551357	113552357	+	689.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-622831.0	NM_001033474	382423.0	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132	ataxin 7-like 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-22755646-2	chr2	22755146	22756146	+	689.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-18681.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-40930116-2	chr14	40929616	40930616	+	689.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 2 of 8)	L1MB2|LINE|L1	18093.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35205970-1	chr8	35205470	35206470	+	689.0	f1_c57bl6.idr	Intergenic	Intergenic	-169771.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	3.5	0.5	6.0	0.0	0.0	5.0
Merged-chr12-73739622-2	chr12	73739122	73740122	+	689.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 10 of 13)	intron (NM_008856, intron 10 of 13)	154826.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95850471-1	chr11	95849971	95850971	+	689.0	f1_balb.idr	Intergenic	Intergenic	7226.0	NM_001284397	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	60.0	113.5	74.0	25.0	61.5	39.0
Merged-chr15-57889326-2	chr15	57888826	57889826	+	689.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024207, intron 1 of 7)	intron (NM_024207, intron 1 of 7)	3092.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25827470-2	chr15	25826970	25827970	+	689.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	-15828.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95891620-2	chr3	95891119	95892119	+	689.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153513, intron 1 of 5)	intron (NM_153513, intron 1 of 5)	386.0	NM_153513	229600.0	Mm.89556	NM_153513	ENSMUSG00000038543	BC028528	L259	cDNA sequence BC028528	protein-coding	40.0	48.5	44.0	35.5	32.5	52.0
Merged-chr9-107544448-1	chr9	107543948	107544948	+	689.0	f1_c57bl6.idr	exon (NM_018879, exon 6 of 11)	exon (NM_018879, exon 6 of 11)	2239.0	NM_018879	56032.0	Mm.11337	NM_018879	ENSMUSG00000010057	Nprl2	2810446G01Rik|G21|NPR2L|Tusc4	nitrogen permease regulator-like 2	protein-coding	6.5	1.5	1.0	3.5	0.0	3.0
Merged-chr1-64924749-2	chr1	64924249	64925249	+	689.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 2 of 7)	intron (NM_001039493, intron 2 of 7)	32075.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22312476-2	chr9	22311976	22312976	+	689.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B2|LTR|ERVK	-4838.0	NM_145612	235050.0	Mm.306038	NM_145612	ENSMUSG00000066829	Zfp810	BC005471	zinc finger protein 810	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54899616-2	chr6	54899116	54900116	+	689.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B3|LTR|ERVK	72045.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63398678-2	chr4	63398178	63399178	+	689.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305432)	promoter-TSS (NM_001305432)	-438.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-52382940-2	chr5	52382440	52383440	+	689.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001256059, intron 11 of 11)	intron (NM_001256059, intron 11 of 11)	19136.0	NM_011435	20657.0	Mm.2407	NM_011435	ENSMUSG00000072941	Sod3	AI314465|EC-SOD	superoxide dismutase 3, extracellular	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr17-34969571-1	chr17	34969071	34970071	+	689.0	f0_balb.idr	3' UTR (NM_010479, exon 1 of 1)	3' UTR (NM_010479, exon 1 of 1)	2585.0	NM_010479	193740.0	Mm.6388	NM_010479	ENSMUSG00000091971	Hspa1a	Hsp70-3|Hsp70.3|Hsp72|hsp68|hsp70A1	heat shock protein 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-133550124-3	chr3	133549682	133550682	+	688.977783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5792.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59622824-3	chr15	59622323	59623323	+	688.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25831.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	1.0	0.0	1.0	1.0	0.0	1.0
Merged-chr2-73274626-3	chr2	73274132	73275132	+	688.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001005343, exon 2 of 2)	3' UTR (NM_001005343, exon 2 of 2)	2706.0	NM_001005343	381373.0	Mm.330293	NM_001005343	ENSMUSG00000068859	Sp9	-	trans-acting transcription factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86588385-4	chr4	86587888	86588888	+	688.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173400, intron 12 of 16)	B3|SINE|B2	-1818.0	NR_028545	100217448.0	Mm.453533	NR_028545	ENSMUSG00000088958	Scarna8	MBI-57	small Cajal body-specific RNA 8	ncRNA	7.0	4.0	1.5	4.0	1.0	1.5
Merged-chr14-31250304-2	chr14	31249804	31250804	+	688.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_027949, intron 1 of 10)	B1_Mus1|SINE|Alu	1011.0	NM_001360625	71838.0	Mm.5348	NM_027949	ENSMUSG00000021902	Phf7	1700006H01Rik|1700010P14Rik|AI427892|AW555949	PHD finger protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184628964-3	chr1	184628480	184629480	+	688.849976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-71289.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76321696-2	chr16	76321210	76322210	+	688.833374	f0_balb.idr|f0_c57.idr	intron (NM_001358238, intron 3 of 3)	intron (NM_001358238, intron 3 of 3)	51339.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40734072-2	chr19	40733612	40734612	+	688.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 8 of 9)	intron (NM_001304721, intron 8 of 9)	74342.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	8.0	16.0	5.0	5.5	7.5	5.5
Merged-chr14-73472489-3	chr14	73471985	73472985	+	688.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37564.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98913087-2	chr7	98912595	98913595	+	688.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 13 of 14)	intron (NM_178635, intron 13 of 14)	74250.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	2.0	4.5	0.0	0.0	0.0	0.0
Merged-chr17-25761496-2	chr17	25760995	25761995	+	688.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Cheshire|DNA|hAT-Charlie	-7117.0	NM_001356286	56047.0	Mm.17510	NM_018857	ENSMUSG00000063011	Msln	MPF	mesothelin	protein-coding	13.5	4.0	3.0	5.5	6.5	3.0
Merged-chr19-37546484-3	chr19	37545975	37546975	+	688.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3943.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	24.5	22.5	19.0	35.5	29.0	22.0
Merged-chr13-36207092-3	chr13	36206589	36207589	+	688.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024274, intron 2 of 6)	intron (NM_024274, intron 2 of 6)	89446.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	7.5	0.0	0.5	2.0	3.5	1.0
Merged-chr15-43364607-3	chr15	43364131	43365131	+	688.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81895.0	NM_008388	16341.0	Mm.289992	NM_008388	ENSMUSG00000022336	Eif3e	48kDa|Eif3s6|Int6|eIF3-p46|eIF3-p48	eukaryotic translation initiation factor 3, subunit E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-85387746-5	chr10	85387192	85388192	+	688.76001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028709, exon 1 of 17)	exon (NM_028709, exon 1 of 17)	878.0	NM_028709	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	1.0	10.0	13.0	1.0	0.0	0.0
Merged-chr2-32610549-2	chr2	32610049	32611049	+	688.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025310, intron 2 of 5)	Tigger5|DNA|TcMar-Tigger	3564.0	NR_110347	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89429641-2	chr6	89429141	89430141	+	688.708374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 4 of 6)	intron (NM_001167736, intron 4 of 6)	-67028.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87439862-2	chr16	87439362	87440362	+	688.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_016924, intron 1 of 4)	B1_Mus1|SINE|Alu	730.0	NM_016924	53858.0	Mm.162406	NM_016924	ENSMUSG00000041079	Rwdd2b	ORF5	RWD domain containing 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98969809-2	chr15	98969309	98970309	+	688.6999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-16156.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48331064-3	chr17	48330563	48331563	+	688.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14901.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38441853-3	chr18	38441368	38442368	+	688.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	22961.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-66914297-3	chr8	66913789	66914789	+	688.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	54072.0	NM_001163564	234344.0	Mm.334561	NM_001163564	ENSMUSG00000014907	Naf1	Gm174	nuclear assembly factor 1 ribonucleoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102051892-2	chr5	102051392	102052392	+	688.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	18029.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91738917-2	chr6	91738417	91739417	+	688.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 6 of 14)	intron (NM_009320, intron 6 of 14)	54850.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-8624696-2	chr18	8624196	8625196	+	688.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3b|LINE|L1	-588160.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25576141-2	chr8	25575641	25576641	+	688.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010206)	TTS (NM_010206)	-20058.0	NR_110510	102633315.0	Mm.437828	NR_110510	ENSMUSG00000086134	Gm16159	-	predicted gene 16159	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-151828073-2	chr4	151827573	151828573	+	688.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195565, intron 3 of 3)	intron (NM_001195565, intron 3 of 3)	33695.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12589192-2	chr13	12588705	12589705	+	688.625	f0_balb.idr|f0_c57.idr	intron (NM_026184, intron 6 of 15)	B3|SINE|B2	23322.0	NM_026184	67475.0	Mm.358706	NM_026184	ENSMUSG00000057069	Ero1lb	1300013B24Rik|1700065B09Rik|AI447560|Ero1b|ero1-beta	ERO1-like beta (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-106787291-2	chr6	106786791	106787791	+	688.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_021449, intron 5 of 10)	intron (NM_021449, intron 5 of 10)	12796.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133297861-2	chr4	133297387	133298387	+	688.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_199306, intron 12 of 15)	intron (NM_199306, intron 12 of 15)	-20097.0	NR_110978	52174.0	Mm.244748	NM_025667	ENSMUSG00000028857	Tmem222	5730406H10Rik|AA409341|D4Ertd196e	transmembrane protein 222	protein-coding	1.5	2.5	2.0	3.0	6.5	3.0
Merged-chr7-3614162-3	chr7	3613670	3614670	+	688.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175632, intron 2 of 4)	intron (NM_175632, intron 2 of 4)	1987.0	NM_175632	232790.0	Mm.358882	NM_175632	ENSMUSG00000054594	Oscar	mOSCAR|mOSCAR-M1|mOSCAR-M2|mOSCAR-M3	osteoclast associated receptor	protein-coding	0.0	0.0	0.0	1.5	0.0	15.5
Merged-chr7-80406379-3	chr7	80405841	80406841	+	688.577759	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081454)	promoter-TSS (NM_001081454)	-905.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0.0	4.0	2.0	6.0	5.5	2.5
Merged-chr13-112769966-1	chr13	112769466	112770466	+	688.5	f0_balb.idr	Intergenic	ID_B1|SINE|B4	-30811.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	1.0	9.0	1.5	2.5	4.0	4.5
Merged-chr1-166149569-1	chr1	166149069	166150069	+	688.5	f0_balb.idr	intron (NM_021610, intron 2 of 6)	intron (NM_021610, intron 2 of 6)	19348.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-91180819-1	chr15	91180319	91181319	+	688.5	f0_balb.idr	intron (NM_011994, intron 3 of 9)	MTD|LTR|ERVL-MaLR	11188.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9614314-2	chr3	9613814	9614814	+	688.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4229.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69918529-2	chr8	69918029	69919029	+	688.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 3 of 12)	intron (NM_001286450, intron 3 of 12)	-15971.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	4.0	0.0	4.5	1.0	0.0	4.5
Merged-chr2-181588108-2	chr2	181587608	181588608	+	688.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105973)	promoter-TSS (NR_105973)	-140.0	NR_105973	102465608.0		NR_105973	ENSMUSG00000098824	Mir7006	Gm27398|mmu-mir-7006	microRNA 7006	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69667606-2	chr11	69667106	69668106	+	688.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_144958, exon 11 of 11)	exon (NM_144958, exon 11 of 11)	-1436.0	NR_110993	12514.0	Mm.15819	NM_009853	ENSMUSG00000018774	Cd68	Lamp4|Scard1|gp110	CD68 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85368318-2	chr12	85367818	85368818	+	688.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 1 of 4)	intron (NM_026775, intron 1 of 4)	6399.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84781587-2	chr18	84781087	84782087	+	688.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37520.0	NR_155706	102641800.0		NR_155706		Gm38576	-	predicted gene, 38576	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127070825-2	chr10	127070325	127071325	+	688.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025982)	promoter-TSS (NM_025982)	344.0	NR_040660	100504703.0	Mm.387029	NR_040660	ENSMUSG00000112639	A730063M14Rik	-	RIKEN cDNA A730063M14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115425906-2	chr8	115425406	115426406	+	688.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	280988.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138328469-2	chr1	138327969	138328969	+	688.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54731.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139279353-2	chr4	139278853	139279853	+	688.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 4 of 9)	intron (NM_001037761, intron 4 of 9)	31355.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	3.5	6.5	3.0	11.0	11.5	11.5
Merged-chr11-102577958-2	chr11	102577458	102578458	+	688.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040286, intron 2 of 2)	intron (NR_040286, intron 2 of 2)	1161.0	NR_040286	100040792.0	Mm.277966	NR_040286	ENSMUSG00000078640	Gm11627	-	predicted gene 11627	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64920364-2	chr17	64919864	64920864	+	688.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84293.0	NM_030031	78057.0	Mm.109380	NM_030031	ENSMUSG00000024088	4930583I09Rik	-	RIKEN cDNA 4930583I09 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106330644-2	chr11	106330144	106331144	+	688.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133199, intron 13 of 23)	B1_Mur4|SINE|Alu	-16082.0	NM_001313939	15985.0	Mm.2987	NM_008339	ENSMUSG00000040592	Cd79b	B29|Ig-beta|Igb|Igbeta	CD79B antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4842253-2	chr12	4841753	4842753	+	688.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016863)	promoter-TSS (NM_016863)	-658.0	NM_016863	14226.0	Mm.20453	NM_016863	ENSMUSG00000020635	Fkbp1b	12.6kDa|AW494148|FKBP12.6|calstabin2	FK506 binding protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117052570-2	chr2	117052070	117053070	+	688.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER3D-int|LTR|ERVK	-68501.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-80640113-2	chr2	80639613	80640613	+	688.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190179, intron 1 of 8)	intron (NM_001190179, intron 1 of 8)	849.0	NM_001190179	69482.0	Mm.29200	NM_027091	ENSMUSG00000026999	Nup35	2310006I24Rik|35kDa|5330402E05Rik|MP44|NO44	nucleoporin 35	protein-coding	10.5	1.0	2.5	11.0	1.0	5.0
Merged-chr12-76614176-2	chr12	76613676	76614676	+	688.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013675, intron 15 of 35)	B4A|SINE|B4	-66251.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81436183-2	chr10	81435683	81436683	+	688.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2C1|LTR|ERVL	-9010.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13667260-2	chr16	13666760	13667760	+	688.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358453, intron 2 of 22)	intron (NM_001358453, intron 2 of 22)	910.0	NM_001358452	74108.0	Mm.182350	NM_028761	ENSMUSG00000022685	Parn	1200003I18Rik|DAN	poly(A)-specific ribonuclease (deadenylation nuclease)	protein-coding	0.0	0.0	0.0	0.0	12.0	1.5
Merged-chr1-92741962-2	chr1	92741462	92742462	+	688.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89683.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-161177902-1	chr2	161177402	161178402	+	688.5	f0_balb.idr	Intergenic	Intergenic	-68816.0	NR_126509	71389.0	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-107600113-2	chr7	107599613	107600613	+	688.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008905, intron 1 of 24)	intron (NM_008905, intron 1 of 24)	5062.0	NM_008905	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171321609-2	chr1	171321109	171322109	+	688.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7199.0	NM_001357550	21945.0	Mm.270139	NM_011615	ENSMUSG00000013973	Dedd	CASP8IP1|DEFT|Dedpro1|FLDED1|KE05	death effector domain-containing	protein-coding	2.0	5.5	0.0	0.0	0.0	0.0
Merged-chr6-122875394-2	chr6	122874894	122875894	+	688.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026267, intron 1 of 7)	intron (NM_026267, intron 1 of 7)	837.0	NM_026267	67602.0	Mm.288114	NM_026267	ENSMUSG00000030327	Necap1	1200016B17Rik|AI747569|mFLJ00061	NECAP endocytosis associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-45040701-2	chr18	45040201	45041201	+	688.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	212036.0	NM_001163013	240255.0	Mm.244482	NM_001163013	ENSMUSG00000034653	Ythdc2	3010002F02Rik|BC037178	YTH domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110284281-2	chr7	110283781	110284781	+	688.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009302)	TTS (NM_009302)	62578.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12455575-2	chr19	12455105	12456105	+	688.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5174.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	15.5	29.0	16.5	16.0	94.5	36.5
Merged-chr7-37357846-2	chr7	37357319	37358319	+	688.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	411933.0	NM_172385	243937.0	Mm.322505	NM_172385	ENSMUSG00000043456	Zfp536	9630010P11Rik|Znf536|mKIAA0390	zinc finger protein 536	protein-coding	0.0	1.0	3.0	1.5	0.0	1.0
Merged-chr3-68053793-2	chr3	68053293	68054293	+	688.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113419, intron 3 of 10)	intron (NM_001113419, intron 3 of 10)	-11009.0	NM_001113420	30953.0	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160615225-2	chr2	160614725	160615725	+	688.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30672.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18630531-2	chr16	18630031	18631031	+	688.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_213614)	promoter-TSS (NM_213614)	-593.0	NM_213614	18951.0	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-82984169-2	chr8	82983669	82984669	+	688.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 1 of 6)	intron (NM_177378, intron 1 of 6)	120813.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	2.0	1.0	2.0	1.5	3.0	4.5
Merged-chr6-72414994-2	chr6	72414494	72415494	+	688.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019802, intron 2 of 14)	MTD|LTR|ERVL-MaLR	686.0	NM_019802	56316.0	Mm.19937	NM_019802	ENSMUSG00000053460	Ggcx	-	gamma-glutamyl carboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55624238-2	chr4	55623738	55624738	+	688.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-91763.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	44.0	150.5	68.0	37.5	108.0	73.5
Merged-chr12-73656875-2	chr12	73656375	73657375	+	688.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	72079.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81596570-2	chr10	81596070	81597070	+	688.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053254, intron 4 of 13)	intron (NM_053254, intron 4 of 13)	797.0	NM_001359135	114606.0	Mm.206764	NM_053254	ENSMUSG00000034758	Tle6	1810057E06Rik|Grg6	transducin-like enhancer of split 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27961683-2	chr17	27961184	27962184	+	688.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	MIRc|SINE|MIR	52378.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	0.5	2.5	0.5	10.5	9.5	5.5
Merged-chr7-19784666-2	chr7	19784166	19785166	+	688.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161844, intron 8 of 10)	B1_Mus2|SINE|Alu	12143.0	NM_001161844	80794.0	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95533946-2	chr11	95533446	95534446	+	688.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19381.0	NM_130858	104079.0	Mm.22970	NM_130858	ENSMUSG00000046719	Nxph3	-	neurexophilin 3	protein-coding	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21942486-3	chr19	21941994	21942994	+	688.444458	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	164154.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	28.0	39.5	34.5	13.5	14.0	11.0
Merged-chr17-3273907-3	chr17	3273458	3274458	+	688.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52615.0	NM_001122998	24001.0	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	0.0	0.0	0.0	2.0	0.0	0.5
Merged-chr17-18968551-4	chr17	18968062	18969062	+	688.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR3-int|LTR|ERVK	54240.0	NM_001104549	627367.0	Mm.384131	NM_001104549	ENSMUSG00000091491	Vmn2r97	EG627367|Vn2r97	vomeronasal 2, receptor 97	protein-coding	2.0	0.0	0.5	0.0	1.0	0.0
Merged-chr1-179561247-4	chr1	179560765	179561765	+	688.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146105, intron 1 of 10)	intron (NM_146105, intron 1 of 10)	14736.0	NM_146105	226744.0	Mm.87662	NM_146105	ENSMUSG00000038949	Cnst	9630058J23Rik	consortin, connexin sorting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11180574-2	chr8	11180074	11181074	+	688.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132231.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36064776-1	chr17	36064276	36065276	+	688.400024	f0_balb.idr	Intergenic	Intergenic	-6405.0	NM_001199967	100529082.0	Mm.484641	NM_001199967	ENSMUSG00000079492	Gm11127	-	predicted gene 11127	protein-coding	0.0	2.5	0.0	3.5	7.0	1.5
Merged-chr11-79089837-3	chr11	79089314	79090314	+	688.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	IMPB_01|Satellite|Satellite	-29978.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-66404673-3	chr18	66404191	66405191	+	688.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53913.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-75467760-4	chr1	75467271	75468271	+	688.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183022, intron 1 of 9)	intron (NM_183022, intron 1 of 9)	11700.0	NM_001001566	74241.0	Mm.260577	NM_001001565	ENSMUSG00000032997	Chpf	1700028N03Rik|AI414328|D1Bwg1363e	chondroitin polymerizing factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-27995362-4	chr5	27994866	27995866	+	688.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76046.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	1.0	0.0	1.5	7.0	2.5	1.5
Merged-chr10-88708376-2	chr10	88707876	88708876	+	688.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22725.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35479681-2	chr9	35479193	35480193	+	688.333374	f0_balb.idr|f1_balb.idr	intron (NM_021339, intron 13 of 18)	intron (NM_021339, intron 13 of 18)	27617.0	NM_021339	57810.0	Mm.80509	NM_021339	ENSMUSG00000038119	Cdon	CDO|Cd0|Orcam	cell adhesion molecule-related/down-regulated by oncogenes	protein-coding	8.0	3.5	3.0	1.5	5.0	3.0
Merged-chr17-12315502-3	chr17	12315003	12316003	+	688.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357722, intron 1 of 25)	intron (NM_001357722, intron 1 of 25)	3157.0	NM_011948	26407.0	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95674690-3	chr9	95674166	95675166	+	688.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 3 of 8)	MTD|LTR|ERVL-MaLR	37038.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75747720-2	chr15	75747220	75748220	+	688.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_194350, exon 1 of 1)	exon (NM_194350, exon 1 of 1)	202.0	NM_194350	378435.0	Mm.309589	NM_194350	ENSMUSG00000047591	Mafa	RIPE3b1	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-179232187-4	chr1	179231676	179232676	+	688.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027188, intron 5 of 11)	intron (NM_027188, intron 5 of 11)	285865.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45919397-3	chr7	45918936	45919936	+	688.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010129, exon 4 of 5)	exon (NM_010129, exon 4 of 5)	1413.0	NM_001146346	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	2.0	18.5	4.5	3.5	7.5	4.5
Merged-chr5-112153960-3	chr5	112153490	112154490	+	688.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-52773.0	NR_045377	75569.0	Mm.243721	NR_045377	ENSMUSG00000101683	1700028D13Rik	-	RIKEN cDNA 1700028D13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-57976845-2	chr18	57976345	57977345	+	688.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98167.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	3.5	5.0	1.0	0.0	6.0	0.5
Merged-chr6-30617347-2	chr6	30616847	30617847	+	688.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_144537, intron 4 of 11)	intron (NM_144537, intron 4 of 11)	6337.0	NM_144537	74649.0	Mm.159276	NM_144537	ENSMUSG00000029788	Cpa5	4930430M09Rik	carboxypeptidase A5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-169061688-2	chr2	169061174	169062174	+	688.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83405.0	NR_040326	75508.0	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129832490-2	chr4	129831929	129832929	+	688.25	f0_balb.idr|f1_balb.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	11721.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	37.0	78.5	43.5	44.0	85.5	29.5
Merged-chr18-23891849-2	chr18	23891349	23892349	+	688.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001162942, exon 8 of 8)	3' UTR (NM_001162942, exon 8 of 8)	-62839.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119246695-2	chr9	119246201	119247201	+	688.25	f0_balb.idr|f0_c57.idr	intron (NM_001359582, intron 14 of 18)	intron (NM_001359582, intron 14 of 18)	-15009.0	NR_033303	109280.0	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	0.0	3.5	0.0	1.0	4.0	0.0
Merged-chr16-59570970-2	chr16	59570476	59571476	+	688.25	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15224.0	NM_174848	224273.0	Mm.246424	NM_174848	ENSMUSG00000022723	Crybg3	5031404N19|AU022790|Gm9581	beta-gamma crystallin domain containing 3	protein-coding	23.5	64.0	19.5	16.5	0.0	7.5
Merged-chr7-44306187-2	chr7	44305642	44306642	+	688.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009131, intron 2 of 3)	intron (NM_009131, intron 2 of 3)	817.0	NM_009131	20256.0	Mm.20428	NM_009131	ENSMUSG00000004473	Clec11a	AW457320|Clecsf3|Scgf	C-type lectin domain family 11, member a	protein-coding	0.0	0.5	2.0	1.0	0.0	0.0
Merged-chr13-4605689-2	chr13	4605192	4606192	+	688.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_018859, intron 2 of 9)	intron (NM_018859, intron 2 of 9)	3472.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	3.5	8.5	1.0	0.0	0.0	0.0
Merged-chr1-95451955-2	chr1	95451446	95452446	+	688.233337	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	138318.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50254976-3	chr11	50254457	50255457	+	688.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175334)	TTS (NM_175334)	-16425.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120572620-3	chr6	120572122	120573122	+	688.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045733, intron 3 of 3)	intron (NR_045733, intron 3 of 3)	17826.0	NR_045733	73505.0	Mm.416867	NR_045733		1700072O05Rik	-	RIKEN cDNA 1700072O05 gene	ncRNA	0.5	1.5	1.0	0.5	7.5	0.0
Merged-chr7-75571156-3	chr7	75570650	75571650	+	688.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 3 of 36)	intron (NM_029332, intron 3 of 36)	115616.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60778693-2	chr11	60778193	60779193	+	688.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_175491, exon 1 of 1)	exon (NM_175491, exon 1 of 1)	1168.0	NM_175491	237782.0	Mm.57726	NM_175491	ENSMUSG00000049323	Smcr8	2310076G09Rik|AI642055|D030073L15Rik	Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-41186177-3	chr12	41185670	41186670	+	688.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	162080.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-105262544-4	chr14	105262038	105263038	+	688.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029561, intron 1 of 7)	B3A|SINE|B2	3865.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	0.5	3.5	0.5	5.0	4.0	4.0
Merged-chr11-82568486-2	chr11	82567986	82568986	+	688.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64867.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84229023-2	chr8	84228504	84229504	+	688.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172503, intron 4 of 13)	intron (NM_172503, intron 4 of 13)	8038.0	NM_172503	212168.0	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	1.5	5.0	0.0	0.0	7.0	1.0
Merged-chr15-96462952-2	chr15	96462452	96463452	+	688.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2109.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121703326-2	chr9	121702826	121703826	+	688.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_178677, intron 1 of 7)	intron (NM_178677, intron 1 of 7)	1703.0	NM_178677	215474.0	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95521817-4	chr11	95521397	95522397	+	688.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7332.0	NM_130858	104079.0	Mm.22970	NM_130858	ENSMUSG00000046719	Nxph3	-	neurexophilin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-60138522-4	chr3	60138023	60139023	+	688.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56654.0	NM_032400	84112.0	Mm.125110	NM_032400	ENSMUSG00000027762	Sucnr1	Gpr91	succinate receptor 1	protein-coding	0.0	3.0	1.0	4.0	4.0	2.0
Merged-chr3-144352798-2	chr3	144352298	144353298	+	688.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147543.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90477762-2	chr2	90477262	90478262	+	688.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	1412.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	14.0	15.0	17.5	12.0	24.0	12.5
Merged-chr12-69132191-3	chr12	69131710	69132710	+	688.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	26976.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	0.5	1.5	0.0	10.0	3.0	0.0
Merged-chr19-53318527-3	chr19	53318019	53319019	+	688.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	MIR3|SINE|MIR	7074.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-108329963-3	chr13	108329505	108330505	+	688.022217	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178683, intron 2 of 10)	intron (NM_178683, intron 2 of 10)	13668.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	3.0	0.0	4.0	0.0	4.0	2.0
Merged-chr2-166519773-2	chr2	166519273	166520273	+	688.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-44749.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61787544-2	chr11	61787044	61788044	+	688.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013881, exon 22 of 27)	exon (NM_013881, exon 22 of 27)	-25456.0	NM_001164243	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-119386980-2	chr12	119386480	119387480	+	688.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56430.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-19751760-1	chr15	19751260	19752260	+	688.0	f1_balb.idr	Intergenic	Intergenic	566387.0	NR_155419	102639102.0	Mm.463245	NR_155419	ENSMUSG00000115803	Gm35496	-	predicted gene, 35496	ncRNA	3.0	0.0	1.5	0.0	0.0	1.0
Merged-chr3-100444074-2	chr3	100443574	100444574	+	688.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17669.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165890816-2	chr2	165890316	165891316	+	688.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-5978.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.0	1.5	0.0	0.0	3.5	0.0
Merged-chr11-99169039-2	chr11	99168539	99169539	+	688.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13962.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-5078685-2	chr7	5078185	5079185	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205231, intron 11 of 11)	intron (NM_001205231, intron 11 of 11)	-1550.0	NM_010147	13854.0	Mm.3091	NM_010147	ENSMUSG00000035203	Epn1	AA269831|Ibp1	epsin 1	protein-coding	10.5	15.0	12.0	5.5	9.5	12.5
Merged-chr6-38921397-2	chr6	38920897	38921897	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	intron (NM_011539, intron 1 of 12)	2411.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-3259742-1	chr15	3259242	3260242	+	688.0	f0_balb.idr	Intergenic	Intergenic	-11025.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-28442902-2	chr15	28442402	28443402	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133365, intron 70 of 78)	intron (NM_133365, intron 70 of 78)	239136.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80266577-2	chr10	80266077	80267077	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133188, intron 1 of 11)	intron (NM_133188, intron 1 of 11)	1586.0	NM_133188	70248.0	Mm.148693	NM_133188	ENSMUSG00000069565	Dazap1	2410042M16Rik|mPrrp	DAZ associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35632522-2	chr8	35631979	35632979	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-43459.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	12.0	18.5	11.5	5.0	8.5	8.0
Merged-chr17-25869248-2	chr17	25868748	25869748	+	688.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026633)	promoter-TSS (NM_026633)	-510.0	NM_026633	68241.0	Mm.328870	NM_026633	ENSMUSG00000025732	Mcrip2	9530058B02Rik|Fam195a	MAPK regulated corepressor interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-75616950-2	chr12	75616450	75617450	+	688.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14799.0	NR_038063	665931.0	Mm.341719	NR_038063		Rplp2-ps1	Gm7852	ribosomal protein, large P2, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145256232-1	chr6	145255732	145256732	+	688.0	f1_c57bl6.idr	Intergenic	Intergenic	5680.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	1.5	7.5	12.5	1.5	1.5	1.0
Merged-chr15-90772587-2	chr15	90772087	90773087	+	688.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93199.0	NM_001357979	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	0.0	0.0	2.5	0.0	0.0	0.0
Merged-chr15-74954298-2	chr15	74953833	74954833	+	688.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164036)	promoter-TSS (NM_001164036)	-718.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	5.0	56.0	45.5	19.0	58.5	35.5
Merged-chr15-73616813-2	chr15	73616313	73617313	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033219, intron 1 of 7)	PB1D7|SINE|Alu	511.0	NM_001357747	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-56614888-2	chr13	56614388	56615388	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155548, intron 2 of 16)	intron (NR_155548, intron 2 of 16)	5302.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	6.0	20.5	22.5	6.0	18.5	22.0
Merged-chr7-101903611-2	chr7	101903111	101904111	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081679, intron 1 of 3)	intron (NM_001081679, intron 1 of 3)	174.0	NM_001282088	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135189324-2	chr5	135188824	135189824	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011714, intron 1 of 18)	intron (NM_011714, intron 1 of 18)	2001.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-109238161-2	chr13	109237661	109238661	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-86583.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98715835-2	chr11	98715335	98716335	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361995, intron 8 of 25)	intron (NM_001361995, intron 8 of 25)	13539.0	NM_001361994	23989.0	Mm.246493	NM_011869	ENSMUSG00000017210	Med24	911GSE|AU040102|AW547152|D11Ertd307e|DRIP100|Gse2|Pparb2|Pparbp2|R75526|Thrap4|Trap100	mediator complex subunit 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-102718513-1	chr9	102718013	102719013	+	688.0	f1_balb.idr	intron (NM_019764, intron 1 of 9)	CpG	709.0	NM_019764	56332.0	Mm.21145	NM_019764	ENSMUSG00000032531	Amotl2	AW549739|C79691|Lccp|MASCOT|mKIAA0989	angiomotin-like 2	protein-coding	0.0	10.0	3.0	3.5	0.0	0.0
Merged-chr14-62883807-1	chr14	62883307	62884307	+	688.0	f1_balb.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	18265.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	31.5	47.5	22.0	27.0	46.5	32.0
Merged-chr5-92126979-2	chr5	92126491	92127491	+	688.0	f0_balb.idr|f1_balb.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	10734.0	NM_001359197	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	8.5	14.5	9.5	15.5	20.5	9.0
Merged-chr17-27648767-1	chr17	27648267	27649267	+	688.0	f1_c57bl6.idr	Intergenic	Intergenic	-6824.0	NM_011861	23969.0	Mm.4926	NM_011861	ENSMUSG00000040276	Pacsin1	A830061D09Rik|H74|mKIAA1379|syndapin	protein kinase C and casein kinase substrate in neurons 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-12763518-2	chr16	12763018	12764018	+	688.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-47872.0	NR_040507	75493.0	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3624715-1	chr19	3624215	3625215	+	688.0	f1_balb.idr	intron (NM_008513, intron 7 of 22)	RSINE1|SINE|B4	-48966.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	6.0	3.5	1.5	1.0	4.5	1.0
Merged-chr6-54080913-1	chr6	54080413	54081413	+	688.0	f1_balb.idr	intron (NM_001163640, intron 1 of 12)	MER102b|DNA|hAT-Charlie	40981.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	1.0	5.5	4.5	0.5	0.0	3.0
Merged-chr10-99949454-2	chr10	99948954	99949954	+	688.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-66367.0	NM_001347156	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62458064-1	chr11	62457564	62458564	+	688.0	f0_c57.idr	promoter-TSS (NM_177229)	promoter-TSS (NM_177229)	-396.0	NM_001039536	327942.0	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-4088539-1	chr6	4088039	4089039	+	688.0	f1_c57bl6.idr	Intergenic	Intergenic	-1609.0	NM_009748	12068.0	Mm.286457	NM_009748	ENSMUSG00000032757	Bet1	AW555236|Bet-1	Bet1 golgi vesicular membrane trafficking protein	protein-coding	4.5	1.0	1.0	6.0	0.5	1.0
Merged-chr4-6412882-2	chr4	6412382	6413382	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 23 of 30)	intron (NM_010945, intron 23 of 30)	41389.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	1.5	0.0	0.0	1.5	0.0	0.0
Merged-chr19-4126733-2	chr19	4126233	4127233	+	688.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016666)	promoter-TSS (NM_016666)	773.0	NM_025889	66990.0	Mm.276255	NM_025889		Tmem134	2410001H17Rik|AI463452	transmembrane protein 134	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88540571-3	chr17	88540081	88541081	+	688.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028658, intron 1 of 21)	intron (NM_028658, intron 1 of 21)	10457.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	37.5	41.0	26.0	26.0	34.0	13.5
Merged-chr5-125409902-2	chr5	125409401	125410401	+	688.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19884.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.0	0.0	2.5	0.0	8.5	0.0
Merged-chr4-145278020-2	chr4	145277520	145278520	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009401, intron 10 of 12)	intron (NM_009401, intron 10 of 12)	-31150.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-13585912-1	chr1	13585412	13586412	+	688.0	f1_balb.idr	intron (NM_028173, intron 1 of 10)	intron (NM_028173, intron 1 of 10)	3998.0	NM_028173	72265.0	Mm.28765	NM_028173	ENSMUSG00000025935	Tram1	1810049E02Rik|TRAMP	translocating chain-associating membrane protein 1	protein-coding	2.0	1.0	1.0	1.0	0.0	0.0
Merged-chr12-21269765-1	chr12	21269265	21270265	+	688.0	f1_balb.idr	TTS (NM_008403)	TTS (NM_008403)	16519.0	NM_008403	16413.0	Mm.273333	NM_008403	ENSMUSG00000062352	Itgb1bp1	AI449260|AU019480|Icap1	integrin beta 1 binding protein 1	protein-coding	8.0	12.0	10.5	7.5	11.0	10.5
Merged-chr13-92485735-2	chr13	92485235	92486235	+	688.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1704.0	NM_001163627	73942.0	Mm.85935	NM_001163627	ENSMUSG00000034334	Fam151b	4930405M20Rik	family with sequence similarity 151, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10838649-2	chr19	10838149	10839149	+	688.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-3895.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-81564496-2	chr2	81564016	81565016	+	688.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-489142.0	NM_175513	241514.0	Mm.119383	NM_175513	ENSMUSG00000070866	Zfp804a	C630007C17Rik|Znf804a	zinc finger protein 804A	protein-coding	0.0	0.0	2.5	0.0	0.0	3.0
Merged-chr12-33304115-3	chr12	33303703	33304703	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033436, intron 1 of 7)	B1_Mur1|SINE|Alu	1688.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.5	26.5	10.0	4.0	16.5	8.5
Merged-chr6-72599900-2	chr6	72599400	72600400	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026159, intron 1 of 10)	B1_Mur3|SINE|Alu	1272.0	NM_026159	67442.0	Mm.305108	NM_026159	ENSMUSG00000056666	Retsat	0610039N19Rik|C80029|MMT-7|Ppsig	retinol saturase (all trans retinol 13,14 reductase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26231572-2	chr17	26231097	26232097	+	688.0	f0_balb.idr|f1_balb.idr	intron (NM_001206335, intron 1 of 12)	B4A|SINE|B4	12645.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	73.0	195.5	178.5	82.0	202.5	152.0
Merged-chr5-140624783-2	chr5	140624283	140625283	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308040, intron 12 of 12)	intron (NM_001308040, intron 12 of 12)	17442.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-31544752-2	chr10	31544252	31545252	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146349, intron 1 of 5)	MLTR11B|LTR|ERVK	64973.0	NM_001146349	268291.0	Mm.295212	NM_001146349	ENSMUSG00000063760	Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-52688915-2	chr12	52688426	52689426	+	688.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10457.0	NM_198111	238161.0	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	1.5	0.0	1.5	0.0	8.5	2.5
Merged-chr6-73711724-1	chr6	73711224	73712224	+	688.0	f0_balb.idr	Intergenic	L3|LINE|CR1	-240703.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	0.0	0.0	1.5	2.0	0.0	1.5
Merged-chr9-13311271-3	chr9	13310765	13311765	+	688.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64309.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	19.0	17.0	12.0	10.0	15.0	16.0
Merged-chr7-88284142-1	chr7	88283642	88284642	+	688.0	f1_c57bl6.idr	intron (NM_009982, intron 2 of 6)	intron (NM_009982, intron 2 of 6)	6057.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	5.0	24.5	21.0	0.0	13.5	6.0
Merged-chr8-19709726-2	chr8	19709226	19710226	+	688.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19850.0	NM_001270553	100861668.0	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107709568-2	chr9	107709068	107710068	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011349, intron 1 of 17)	CpG	907.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87305220-2	chr17	87304720	87305720	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 3 of 19)	intron (NM_028639, intron 3 of 19)	22334.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117816853-2	chr10	117816353	117817353	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 7 of 7)	intron (NM_024457, intron 7 of 7)	-24148.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40970289-2	chr4	40969789	40970789	+	688.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290449)	promoter-TSS (NM_001290449)	-617.0	NM_001290449	74164.0	Mm.247456	NM_023739	ENSMUSG00000028423	Nfx1	1300017N15Rik|3000003M19Rik|NFX.1|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123910562-2	chr5	123910062	123911062	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026603, intron 2 of 7)	intron (NM_026603, intron 2 of 7)	3287.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125527642-2	chr8	125527146	125528146	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	-34813.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	21.0	49.5	26.5	7.0	38.0	52.5
Merged-chr10-82866094-1	chr10	82865594	82866594	+	688.0	f0_c57.idr	promoter-TSS (NM_025499)	promoter-TSS (NM_025499)	-532.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	0.0	7.5	2.0	0.0	0.0	0.0
Merged-chr15-89074854-2	chr15	89074354	89075354	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040417, intron 1 of 3)	intron (NR_040417, intron 1 of 3)	1000.0	NR_040417	69120.0	Mm.276391	NR_040417	ENSMUSG00000087331	1810021B22Rik	-	RIKEN cDNA 1810021B22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19988164-2	chr3	19987664	19988664	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276248, intron 17 of 19)	intron (NM_001276248, intron 17 of 19)	31110.0	NM_001276248	12870.0	Mm.13787	NM_007752	ENSMUSG00000003617	Cp	D3Ertd555e	ceruloplasmin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-144479908-2	chr7	144479408	144480408	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195086, intron 30 of 31)	intron (NM_001195086, intron 30 of 31)	-8973.0	NM_001252572	13043.0	Mm.205601	NM_007803	ENSMUSG00000031078	Cttn	1110020L01Rik|Ems1	cortactin	protein-coding	2.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-16856806-3	chr6	16856282	16857282	+	688.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 2 of 6)	intron (NM_031198, intron 2 of 6)	41659.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102142189-1	chr7	102141689	102142689	+	688.0	f0_balb.idr	intron (NM_001287164, intron 20 of 32)	intron (NM_001287164, intron 20 of 32)	-25476.0	NM_001081424	504186.0	Mm.334074	NM_001081424	ENSMUSG00000066279	Chrna10	-	cholinergic receptor, nicotinic, alpha polypeptide 10	protein-coding	3.0	14.0	14.0	5.5	5.5	21.5
Merged-chr11-68471208-2	chr11	68470708	68471708	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	RMER13A2|LTR|ERVK	-31811.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87441973-2	chr11	87441473	87442473	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	14382.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87026077-2	chr11	87025577	87026577	+	688.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-32315.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38164742-2	chr2	38164242	38165242	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146122, intron 2 of 21)	intron (NM_146122, intron 2 of 21)	122642.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84806629-3	chr18	84806110	84807110	+	688.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44728.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60289124-2	chr10	60288624	60289624	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146124, intron 1 of 13)	B1F|SINE|Alu	4663.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123491683-2	chr4	123491183	123492183	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 27 of 92)	intron (NM_001199137, intron 27 of 92)	-79772.0	NM_001167918	442834.0	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77921513-3	chr9	77921007	77922007	+	687.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134255, intron 1 of 7)	intron (NM_134255, intron 1 of 7)	4142.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95053895-4	chr3	95053409	95054409	+	687.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-11295.0	NM_008951	19185.0	Mm.2261	NM_008951	ENSMUSG00000005625	Psmd4	Af1|Mcb1|angiocidin	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-93793521-3	chr13	93793019	93794019	+	687.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009712, intron 2 of 7)	intron (NM_009712, intron 2 of 7)	2742.0	NR_049198	100885837.0		NR_049198	ENSMUSG00000093480	Mir5624	Gm25075|mir-5624|mmu-mir-5624	microRNA 5624	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111746292-3	chr12	111745775	111746775	+	687.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163388, intron 4 of 5)	intron (NM_001163388, intron 4 of 5)	-12574.0	NM_001361612	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-130012276-3	chr7	130011767	130012767	+	687.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50102.0	NR_046077	100043150.0	Mm.334264	NR_046077	ENSMUSG00000108504	Gm4265	-	predicted gene 4265	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122627372-4	chr5	122626824	122627824	+	687.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12780.0	NM_009879	12589.0	Mm.10125	NM_009879	ENSMUSG00000029469	Ift81	AW060663|Cdv-1|Cdv-1r|Cdv1	intraflagellar transport 81	protein-coding	0.0	0.0	0.0	0.0	6.0	0.0
Merged-chr12-99969163-2	chr12	99968663	99969663	+	687.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	4664.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109407273-2	chr4	109406773	109407773	+	687.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_153392, intron 1 of 17)	CpG	173.0	NM_153392	230603.0	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30590833-2	chr14	30590396	30591396	+	687.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18747.0	NR_037237	100526475.0		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	5.5	12.5	12.5	1.5	0.0	1.5
Merged-chr5-140337374-2	chr5	140336874	140337874	+	687.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356584, intron 4 of 4)	B3|SINE|B2	5418.0	NM_001356584	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-10714182-3	chr15	10713694	10714694	+	687.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030690)	promoter-TSS (NM_030690)	-96.0	NM_001356534	75646.0	Mm.212395	NM_030690	ENSMUSG00000022246	Rai14	1700008J19Rik|1700020L11Rik|Ankycorbin|Norpeg|mKIAA1334	retinoic acid induced 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128714518-3	chr2	128714012	128715012	+	687.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	15597.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	26.5	86.0	73.5	44.5	84.5	70.0
Merged-chr2-25560598-2	chr2	25560098	25561098	+	687.8000490000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_021519, exon 3 of 5)	exon (NM_021519, exon 3 of 5)	2698.0	NM_021519	59022.0	Mm.29945	NM_021519	ENSMUSG00000015092	Edf1	0610008L11Rik|AA409425	endothelial differentiation-related factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53835801-2	chr11	53835301	53836301	+	687.799988	f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 2 of 3)	intron (NR_033332, intron 2 of 3)	23455.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21590499-3	chr16	21590015	21591015	+	687.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 44 of 46)	intron (NM_001081366, intron 44 of 46)	104150.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106933342-3	chr8	106932837	106933837	+	687.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2413.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113075498-4	chr6	113074986	113075986	+	687.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027009, intron 1 of 1)	intron (NR_027009, intron 1 of 1)	1758.0	NR_027010	14910.0	Mm.280950	NR_027008	ENSMUSG00000086429	Gt(ROSA)26Sor	AV258896|Gtrgeo26|Gtrosa26|R26|ROSA26|Thumpd3as1	gene trap ROSA 26, Philippe Soriano	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-44018319-2	chr4	44017819	44018819	+	687.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080384, intron 2 of 5)	RSINE1|SINE|B4	5669.0	NM_001290470	12757.0	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32030735-2	chr19	32030235	32031235	+	687.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_018830, intron 10 of 23)	intron (NM_018830, intron 10 of 23)	72405.0	NM_018830	54447.0	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73590862-2	chr15	73590362	73591362	+	687.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357747, intron 2 of 7)	intron (NM_001357747, intron 2 of 7)	5664.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85703638-4	chr12	85703123	85704123	+	687.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016767, intron 2 of 2)	intron (NM_016767, intron 2 of 2)	16903.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-81622725-3	chr6	81622239	81623239	+	687.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	272924.0	NR_106091	102465711.0		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94504783-2	chr16	94504283	94505283	+	687.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 4 of 7)	intron (NM_007834, intron 4 of 7)	21846.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53044762-2	chr4	53044262	53045262	+	687.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 39 of 49)	B3|SINE|B2	32882.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-8494322-2	chr16	8493822	8494822	+	687.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19107.0	NM_001170978	268860.0	Mm.259315	NM_172961	ENSMUSG00000057880	Abat	9630038C02Rik|AI255750|Gabaat|Gabat|Gm9851|I54|Laibat|X61497	4-aminobutyrate aminotransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138983262-3	chr1	138982801	138983801	+	687.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	5644.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-103986106-3	chr12	103985614	103986614	+	687.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001166350, exon 2 of 5)	exon (NM_001166350, exon 2 of 5)	3829.0	NM_199314	380780.0	Mm.201338	NM_199314	ENSMUSG00000063232	Serpina11	Gm895	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11	protein-coding	6.5	1.5	4.0	0.0	6.0	2.0
Merged-chr1-133660852-2	chr1	133660338	133661338	+	687.583374	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001166552)	promoter-TSS (NM_001166552)	47.0	NM_001166552	667118.0	Mm.245357	NM_001166552	ENSMUSG00000102049	Zbed6	Gm8466|MGR	zinc finger, BED type containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-109278051-2	chr13	109277551	109278551	+	687.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-46693.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121372197-3	chr9	121371697	121372697	+	687.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357973, intron 1 of 5)	intron (NM_001357973, intron 1 of 5)	5239.0	NM_175114	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97751546-4	chr7	97751101	97752101	+	687.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-13354.0	NM_175105	66333.0	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	2.5	4.5	3.0	0.0	0.0	2.5
Merged-chr10-83819833-3	chr10	83819339	83820339	+	687.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96974.0	NM_001145198	69784.0	Mm.271188	NM_001145198	ENSMUSG00000087651	1500009L16Rik	2700050C19Rik|OCC-1	RIKEN cDNA 1500009L16 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54423534-3	chr14	54423052	54424052	+	687.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3357.0	NM_026851	68836.0	Mm.248163	NM_026851	ENSMUSG00000010406	Mrpl52	1110047B07Rik	mitochondrial ribosomal protein L52	protein-coding	0.0	4.5	0.0	0.0	2.0	0.0
Merged-chr13-58687077-1	chr13	58686577	58687577	+	687.5	f0_balb.idr	Intergenic	Intergenic	75234.0	NR_045469	67585.0	Mm.84751	NR_045469	ENSMUSG00000114384	4930455J16Rik	-	RIKEN cDNA 4930455J16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63034424-2	chr9	63033924	63034924	+	687.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53545.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-48983444-5	chr7	48982947	48983947	+	687.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	24374.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65866399-2	chr5	65865899	65866899	+	687.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	2830.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69836771-2	chr11	69836272	69837272	+	687.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1753.0	NM_026982	69186.0	Mm.248772	NM_026982	ENSMUSG00000070394	Tmem256	1810027O10Rik|3110009M16Rik	transmembrane protein 256	protein-coding	3.5	0.0	0.5	3.5	0.0	0.5
Merged-chr8-117578027-2	chr8	117577527	117578527	+	687.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 10 of 32)	intron (NM_172285, intron 10 of 32)	79752.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12183195-2	chr18	12182695	12183695	+	687.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029623, intron 10 of 19)	intron (NM_029623, intron 10 of 19)	14465.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-110314892-2	chr10	110314392	110315392	+	687.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-285758.0	NR_028438	109335.0	Mm.367727	NR_028438	ENSMUSG00000112398	9230102K24Rik	-	RIKEN cDNA 9230102K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-7455802-1	chr16	7455302	7456302	+	687.5	f0_balb.idr	Intergenic	Intergenic	385967.0	NM_183188	268859.0	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	2.0	10.5	8.5	1.0	3.0	6.5
Merged-chr15-100620840-2	chr15	100620340	100621340	+	687.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011873)	TTS (NM_011873)	5178.0	NM_011873	23994.0	Mm.486175	NM_011873	ENSMUSG00000000346	Dazap2	AI314727|Brbp|Gcap28|Prtb|gt6-12|mKIAA0058	DAZ associated protein 2	protein-coding	5.5	12.0	8.0	0.0	2.5	9.0
Merged-chr5-140622368-2	chr5	140621868	140622868	+	687.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175274, exon 14 of 14)	3' UTR (NM_175274, exon 14 of 14)	15027.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46957468-2	chr18	46956968	46957968	+	687.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1408.0	NM_178377	69456.0	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2|Tg(Vav1-icre)A2Kio|Vav-cre|Vav-iCre|Vav1-Cre|VavCre	COMM domain containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80216306-2	chr15	80215806	80216806	+	687.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010795)	TTS (NM_010795)	-17774.0	NM_001357659	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	0.5	3.0	5.5	0.5	0.0	2.5
Merged-chr16-42859431-2	chr16	42858931	42859931	+	687.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040522, intron 1 of 1)	MTD|LTR|ERVL-MaLR	16156.0	NR_040521	75722.0	Mm.243747	NR_040521	ENSMUSG00000075070	4932412D23Rik	Gm10809	RIKEN cDNA 4932412D23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31857449-2	chr17	31856931	31857931	+	687.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1627.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	0.0	0.0	1.0	0.0	2.0	0.0
Merged-chr7-80097078-2	chr7	80096578	80097578	+	687.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173011, intron 7 of 10)	RSINE1|SINE|B4	18272.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-3562279-2	chr10	3561779	3562779	+	687.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22000.0	NM_027391	70337.0	Mm.24153	NM_027391	ENSMUSG00000019762	Iyd	0610009A07Rik|AI265638|Dehal1	iodotyrosine deiodinase	protein-coding	0.0	0.0	2.0	0.5	3.0	0.0
Merged-chr15-67355510-2	chr15	67354996	67355996	+	687.5	f0_balb.idr|f1_balb.idr	intron (NR_045140, intron 7 of 8)	MIR|SINE|MIR	128727.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	4.5	6.0	6.0	4.0	12.0	7.5
Merged-chr7-99087108-2	chr7	99086632	99087632	+	687.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 5 of 14)	intron (NM_178635, intron 5 of 14)	54012.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	2.0	3.0	0.0	4.0	1.0	0.0
Merged-chr10-80710642-2	chr10	80710142	80711142	+	687.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007460, intron 24 of 30)	intron (NM_007460, intron 24 of 30)	7949.0	NM_027829	71564.0	Mm.35802	NM_027829	ENSMUSG00000055862	Izumo4	9030607L17Rik|AI550407	IZUMO family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148546910-2	chr5	148546410	148547410	+	687.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	4763.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	1.0	7.5	3.5	0.0	5.0	11.0
Merged-chr1-87201640-1	chr1	87201140	87202140	+	687.5	f0_balb.idr	Intergenic	Intergenic	-4171.0	NM_009604	11449.0	Mm.2810	NM_009604	ENSMUSG00000026253	Chrng	Achr-3|Acrg	cholinergic receptor, nicotinic, gamma polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-57549221-2	chr18	57548721	57549721	+	687.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027945, exon 2 of 4)	non-coding (NR_027945, exon 2 of 4)	2646.0	NR_027945	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-90999941-2	chr1	90999441	91000441	+	687.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	1214.0	NM_001111312	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-15335317-2	chr16	15334817	15335817	+	687.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25A|LTR|ERVK	259201.0	NM_001159351	70620.0	Mm.235407	NM_023585	ENSMUSG00000022674	Ube2v2	1110021H13Rik|4632410D19Rik|5730524P06Rik|6820402M05|AI848315|C81524|MMS2	ubiquitin-conjugating enzyme E2 variant 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5431718-2	chr17	5431218	5432218	+	687.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027457, intron 3 of 3)	intron (NM_027457, intron 3 of 3)	8542.0	NM_027457	70544.0	Mm.46654	NM_027457	ENSMUSG00000004945	Tmem242	1110008A10Rik|2310046K16Rik|5730437N04Rik	transmembrane protein 242	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76787456-1	chr15	76786956	76787956	+	687.5	f0_balb.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	30714.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	8.0	2.5	4.5	10.0	10.5	29.0
Merged-chr2-93646091-2	chr2	93645596	93646596	+	687.5	f0_balb.idr|f0_c57.idr	intron (NM_007442, intron 1 of 3)	CpG	3662.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	0.0	0.0	0.0	5.5	0.0	1.0
Merged-chr12-76256359-2	chr12	76255859	76256859	+	687.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138745, intron 1 of 27)	intron (NM_138745, intron 1 of 27)	1127.0	NM_138745	108156.0	Mm.29584	NM_138745	ENSMUSG00000021048	Mthfd1	Dcs|E430024A07Rik|Mthfd	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25317814-2	chr15	25317314	25318314	+	687.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95950.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44545197-2	chr9	44544697	44545697	+	687.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18776.0	NM_007551	12145.0	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	0.0	0.0	0.0	4.5	0.0	0.0
Merged-chr2-90544920-2	chr2	90544420	90545420	+	687.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	35727.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	75.0	104.5	61.5	65.5	124.5	84.5
Merged-chr2-18055776-2	chr2	18055276	18056276	+	687.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_149308)	promoter-TSS (NR_149308)	48.0	NR_149308	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127259249-2	chr7	127258749	127259749	+	687.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023203, intron 2 of 2)	L2c|LINE|L2	1418.0	NM_023203	66422.0	Mm.29898	NM_023203	ENSMUSG00000042462	Dctpp1	2410015N17Rik|AI854235|RS21-C6	dCTP pyrophosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145221672-2	chr4	145221172	145222172	+	687.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 8 of 9)	intron (NM_011610, intron 8 of 9)	25198.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34923930-2	chr17	34923430	34924430	+	687.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023557, intron 13 of 20)	intron (NM_023557, intron 13 of 20)	-7323.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59005457-2	chr13	59004946	59005946	+	687.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	197749.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	0.0	4.5	0.0	3.0	3.5	1.0
Merged-chr7-100198837-1	chr7	100198337	100199337	+	687.400024	f0_balb.idr	Intergenic	Lx6|LINE|L1	20154.0	NM_001190871	57442.0	Mm.282386	NM_020574	ENSMUSG00000035165	Kcne3	2210017H05Rik|MiRP2	potassium voltage-gated channel, Isk-related subfamily, gene 3	protein-coding	16.0	11.0	12.5	5.5	11.5	12.0
Merged-chr10-127655468-4	chr10	127654979	127655979	+	687.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009284, exon 13 of 22)	exon (NM_009284, exon 13 of 22)	11224.0	NM_001122895	17937.0	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	6.0	13.5	7.5	6.0	10.0	13.0
Merged-chr9-61985290-4	chr9	61984765	61985765	+	687.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 2 of 7)	intron (NM_028748, intron 2 of 7)	-38466.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191091563-2	chr1	191091071	191092071	+	687.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6843.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	36.5	58.5	51.5	40.0	65.0	46.0
Merged-chr16-55954345-3	chr16	55953844	55954844	+	687.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS_Mus|LTR|ERV1	-11931.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-126495997-1	chr2	126495497	126496497	+	687.333313	f0_balb.idr	intron (NM_001359975, intron 1 of 27)	intron (NM_001359975, intron 1 of 27)	3850.0	NM_001359975	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	24.0	45.5	14.0	15.0	27.5	7.0
Merged-chr11-57674078-3	chr11	57673585	57674585	+	687.333313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_134189, intron 1 of 11)	intron (NM_134189, intron 1 of 11)	-24591.0	NR_153850	78762.0	Mm.362149	NR_153850		4933424L21Rik	-	RIKEN cDNA 4933424L21 gene	ncRNA	21.0	68.5	34.0	24.0	9.0	12.5
Merged-chr8-83700619-3	chr8	83700099	83701099	+	687.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1420.0	NM_177262	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	10.0	19.5	11.0	2.0	10.0	9.5
Merged-chr14-122474289-5	chr14	122473818	122474818	+	687.299988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045046, intron 2 of 4)	CpG	881.0	NR_045046	69248.0	Mm.235369	NR_045046	ENSMUSG00000085555	2610035F20Rik	-	RIKEN cDNA 2610035F20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-88372255-4	chr16	88371755	88372755	+	687.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81990.0	NM_001346964	14805.0	Mm.5134	NM_010348	ENSMUSG00000022935	Grik1	A830007B11Rik|D16Ium24|D16Ium24e|GluK1|GluK5|Glur-5|Glur5|Glurbeta1	glutamate receptor, ionotropic, kainate 1	protein-coding	0.0	0.0	2.0	3.0	0.0	1.5
Merged-chr19-7496358-4	chr19	7495852	7496852	+	687.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146091, intron 1 of 12)	B2_Mm1a|SINE|B2	1914.0	NM_146091	109168.0	Mm.264016	NM_146091	ENSMUSG00000024759	Atl3	4633402C03Rik|5730596K20Rik|AI465397|AW228836	atlastin GTPase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99279157-4	chr5	99278663	99279663	+	687.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26236.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	4.0	1.0	5.0	6.5	10.0
Merged-chr7-127757420-2	chr7	127756920	127757920	+	687.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172748, intron 7 of 10)	intron (NM_172748, intron 7 of 10)	10645.0	NM_172748	233902.0	Mm.259353	NM_172748	ENSMUSG00000030811	Fbxl19	6030430O11|BC059812|Fbl19	F-box and leucine-rich repeat protein 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106919605-2	chr11	106919105	106920105	+	687.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_025481, intron 1 of 18)	intron (NM_025481, intron 1 of 18)	1110.0	NM_025481	66313.0	Mm.340955	NM_025481	ENSMUSG00000018363	Smurf2	2810411E22Rik|AI558114|AI649275	SMAD specific E3 ubiquitin protein ligase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-6467139-3	chr1	6466625	6467625	+	687.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20106.0	NM_001244693	240690.0	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113919346-2	chr13	113918846	113919846	+	687.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	124838.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106972484-2	chr11	106971924	106972924	+	687.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27101.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	28.5	70.0	41.0	24.5	57.0	39.0
Merged-chr6-72381643-2	chr6	72381143	72382143	+	687.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1175.0	NM_016872	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152294683-3	chr2	152294203	152295203	+	687.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024196, intron 1 of 7)	intron (NM_024196, intron 1 of 7)	831.0	NM_024196	67231.0	Mm.288733	NM_024196	ENSMUSG00000027465	Tbc1d20	1110028I04Rik|2810442O16Rik|AI414693|bs	TBC1 domain family, member 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70987001-4	chr17	70986494	70987494	+	687.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023402, intron 1 of 3)	intron (NM_023402, intron 1 of 3)	3522.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88044512-1	chr6	88044012	88045012	+	687.200012	f0_balb.idr	intron (NM_001293652, intron 1 of 7)	MIR|SINE|MIR	505.0	NM_001293653	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-15748049-3	chr6	15747545	15748545	+	687.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 3 of 4)	(TG)n|Simple_repeat|Simple_repeat	27384.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-28165601-3	chr3	28165036	28166036	+	687.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-97678.0	NM_001163007	665113.0	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-9691116-2	chr15	9690616	9691616	+	687.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305042, intron 10 of 36)	intron (NM_001305042, intron 10 of 36)	57752.0	NM_177123	320277.0	Mm.127822	NM_177123	ENSMUSG00000072663	Spef2	C230086A09Rik	sperm flagellar 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57116255-2	chr16	57115756	57116756	+	687.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-5458.0	NM_138599	28185.0	Mm.196933	NM_138599	ENSMUSG00000022752	Tomm70a	2610044B22Rik|D16Ium22|D16Ium22e|D16Wsu109e|Tom70|Tomm70|mKIAA0719	translocase of outer mitochondrial membrane 70A	protein-coding	3.0	13.0	0.0	7.5	0.0	0.5
Merged-chr8-68918553-2	chr8	68918077	68919077	+	687.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38022.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	15.0	37.0	29.0	15.0	26.0	20.5
Merged-chr5-34763017-2	chr5	34762517	34763517	+	687.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010414, intron 1 of 66)	intron (NM_010414, intron 1 of 66)	1277.0	NM_010414	15194.0	Mm.209071	NM_010414	ENSMUSG00000029104	Htt	AI256365|C430023I11Rik|Hd|Hdh|IT15	huntingtin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-99030365-2	chr6	99029865	99030865	+	687.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 4 of 17)	intron (NM_001197321, intron 4 of 17)	-2067.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-101955935-2	chr12	101955374	101956374	+	687.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029705, intron 1 of 10)	Lx|LINE|L1	2369.0	NM_029705	110616.0	Mm.271914	NM_029705	ENSMUSG00000021189	Atxn3	2210008M02Rik|AI463012|AI647473|ATX3|MJD1|Mjd|Sca3|ataxin-3	ataxin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151422376-4	chr1	151421883	151422883	+	687.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025819, intron 2 of 19)	intron (NM_025819, intron 2 of 19)	6052.0	NM_025819	66875.0	Mm.290905	NM_025819	ENSMUSG00000052748	Swt1	1200016B10Rik|C1orf26	SWT1 RNA endoribonuclease homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103927498-4	chr3	103926913	103927913	+	687.125	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356557, intron 1 of 6)	intron (NM_001356557, intron 1 of 6)	13293.0	NM_172684	229675.0	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|KDM9|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	4.0	5.0	4.5	6.0	8.0	2.5
Merged-chr16-82761624-3	chr16	82761139	82762139	+	687.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1560942.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-61151851-3	chr19	61151344	61152344	+	687.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11004.0	NR_131954	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	3.0	7.5	11.0	1.0	8.0	0.0
Merged-chr11-106819124-3	chr11	106818628	106819628	+	687.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025481)	TTS (NM_025481)	29876.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	22.5	54.0	31.5	20.5	43.5	33.5
Merged-chr11-100841016-4	chr11	100840485	100841485	+	687.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113563, intron 1 of 18)	intron (NM_001113563, intron 1 of 18)	9600.0	NM_001113563	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	2.0	4.0	1.5	0.0	8.0	2.5
Merged-chr6-115662366-4	chr6	115661881	115662881	+	687.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029780, intron 1 of 16)	B1_Mur1|SINE|Alu	13507.0	NM_001356334	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125052254-4	chr8	125051763	125052763	+	687.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVL-int|LTR|ERVL	-1932.0	NM_174853	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	12.0	12.5	5.5	0.0	12.5	11.5
Merged-chr16-91386142-1	chr16	91385642	91386642	+	687.0	f0_balb.idr	intron (NM_001347258, intron 4 of 7)	intron (NM_001347258, intron 4 of 7)	13359.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152089175-2	chr1	152088675	152089675	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 1 of 5)	intron (NM_197990, intron 1 of 5)	1145.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97365208-1	chr11	97364708	97365708	+	687.0	f1_c57bl6.idr	intron (NM_138657, intron 1 of 9)	intron (NM_138657, intron 1 of 9)	2657.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	0.0	0.0	2.0	2.5	6.5	2.0
Merged-chr2-72318641-1	chr2	72318141	72319141	+	687.0	f0_balb.idr	intron (NM_023057, intron 2 of 19)	ERVL-int|LTR|ERVL	32940.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132685949-2	chr7	132685449	132686449	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 6 of 6)	intron (NM_029609, intron 6 of 6)	75306.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25087839-2	chr7	25087339	25088339	+	687.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9336.0	NR_105855	102465968.0		NR_105855	ENSMUSG00000098441	Mir6537	Gm27808|mmu-mir-6537	microRNA 6537	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34284584-2	chr19	34284088	34285088	+	687.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-6071.0	NM_007987	14102.0	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	17.0	30.5	31.5	0.0	0.0	1.0
Merged-chr12-116404642-2	chr12	116404150	116405150	+	687.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133762)	promoter-TSS (NM_133762)	511.0	NR_028421	319545.0	Mm.390543	NR_028421	ENSMUSG00000112980	D430020J02Rik	-	RIKEN cDNA D430020J02 gene	ncRNA	0.0	14.5	7.5	0.0	7.5	2.0
Merged-chr6-31813977-1	chr6	31813477	31814477	+	687.0	f0_balb.idr	Intergenic	Intergenic	-147846.0	NR_152155	434003.0	Mm.332979	NR_152155	ENSMUSG00000084973	Gm13848	-	predicted gene 13848	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38398317-2	chr16	38397817	38398817	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134102, intron 9 of 10)	intron (NM_134102, intron 9 of 10)	34828.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103503777-2	chr15	103503277	103504277	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008800, intron 2 of 15)	intron (NM_008800, intron 2 of 15)	743.0	NM_008800	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32343880-1	chr4	32343380	32344380	+	687.0	f0_balb.idr	Intergenic	Intergenic	-73555.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46351213-2	chr17	46350713	46351713	+	687.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	-23190.0	NM_170680	224814.0	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106157196-2	chr9	106156722	106157722	+	687.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_174846, exon 2 of 4)	exon (NM_174846, exon 2 of 4)	916.0	NM_001039586	235582.0	Mm.335420	NM_174846	ENSMUSG00000020258	Glyctk	6230410P16Rik|C430006L12	glycerate kinase	protein-coding	0.5	4.0	1.0	2.5	0.0	2.0
Merged-chr2-173768406-2	chr2	173767906	173768906	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019806, intron 2 of 5)	intron (NM_019806, intron 2 of 5)	30835.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-63094446-2	chr16	63093946	63094946	+	687.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	240139.0	NM_011173	19128.0	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-162631275-1	chr1	162630775	162631775	+	687.0	f0_balb.idr	Intergenic	Intergenic	-7875.0	NM_010865	17926.0	Mm.10694	NM_010865	ENSMUSG00000026697	Myoc	AI957332|GLC1A|TIGR	myocilin	protein-coding	2.5	0.0	6.0	0.0	2.5	0.5
Merged-chr14-21759500-1	chr14	21759000	21760000	+	687.0	f1_c57bl6.idr	intron (NM_001359953, intron 1 of 5)	Lx8|LINE|L1	7948.0	NM_001359953	67630.0	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	5.5	18.0	2.0	6.0	5.0	6.5
Merged-chr12-86798356-2	chr12	86797856	86798856	+	687.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	63987.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12256570-3	chr13	12256052	12257052	+	687.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081128, intron 1 of 32)	intron (NM_001081128, intron 1 of 32)	1561.0	NM_001081128	238505.0	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-10924164-1	chr4	10923664	10924664	+	687.0	f1_balb.idr	Intergenic	Intergenic	49666.0	NM_026005	67157.0	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	25.0	106.0	65.0	14.0	54.5	34.5
Merged-chr17-34022482-2	chr17	34021982	34022982	+	687.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009066, exon 5 of 7)	exon (NM_009066, exon 5 of 7)	2198.0	NM_009066	19763.0	Mm.20343	NM_009066	ENSMUSG00000024325	Ring1	Ring1A	ring finger protein 1	protein-coding	5.0	9.0	0.0	0.0	0.0	0.0
Merged-chr6-40940760-2	chr6	40940260	40941260	+	687.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361930)	promoter-TSS (NM_001361930)	-203.0	NM_028550	73481.0	Mm.333010	NM_028550	ENSMUSG00000029883	1700074P13Rik	AV047902|Tryx5	RIKEN cDNA 1700074P13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-85051462-2	chr16	85050962	85051962	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 6 of 15)	intron (NM_001198825, intron 6 of 15)	79251.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141014013-2	chr4	141013513	141014513	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161799, intron 3 of 8)	intron (NM_001161799, intron 3 of 8)	3376.0	NM_008546	17150.0	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31024851-4	chr2	31024337	31025337	+	687.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42558.0	NM_028846	74270.0	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32555607-3	chr11	32555111	32556111	+	687.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	22345.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	12.5	31.0	27.0	3.0	23.5	15.0
Merged-chr3-103426160-2	chr3	103425660	103426660	+	687.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146867.0	NM_053170	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47743378-1	chr9	47742878	47743878	+	687.0	f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	74830.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	119.5	212.0	160.0	136.5	262.0	263.0
Merged-chr1-121307324-3	chr1	121306832	121307832	+	687.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271532, intron 2 of 4)	intron (NM_001271532, intron 2 of 4)	20346.0	NM_001271531	72999.0	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155087555-2	chr4	155087055	155088055	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356327, intron 2 of 12)	intron (NM_001356327, intron 2 of 12)	951.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-110976185-2	chr10	110975685	110976685	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359624, intron 3 of 16)	intron (NM_001359624, intron 3 of 16)	33824.0	NM_001359622	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29239842-2	chr7	29239342	29240342	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357664, intron 1 of 7)	intron (NM_001357664, intron 1 of 7)	1385.0	NM_001357664	77254.0	Mm.36699	NM_029887	ENSMUSG00000030588	Yif1b	9430029K10Rik|Yip1b	Yip1 interacting factor homolog B (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	1.5	0.0
Merged-chr19-32276046-2	chr19	32275546	32276546	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168525, intron 2 of 9)	MTB_Mm|LTR|ERVL-MaLR	-65033.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165782391-2	chr2	165781891	165782891	+	687.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75782.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	2.5	1.5	2.5	0.0	0.0	0.0
Merged-chr6-137465210-2	chr6	137464710	137465710	+	687.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164401)	TTS (NM_001164401)	54489.0	NM_001164403	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45552814-2	chr9	45552314	45553314	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081270, intron 3 of 32)	MIRc|SINE|MIR	-121582.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101112360-1	chr15	101111860	101112860	+	687.0	f1_c57bl6.idr	Intergenic	L1MA8|LINE|L1	-3395.0	NM_144790	208258.0	Mm.152952	NM_144790	ENSMUSG00000047034	Ankrd33	A930021G21Rik|Panky|Panky-a	ankyrin repeat domain 33	protein-coding	9.0	16.0	5.0	1.0	3.0	1.5
Merged-chr11-60202937-2	chr11	60202437	60203437	+	687.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105887)	promoter-TSS (NR_105887)	-610.0	NR_105887	102465556.0		NR_105887	ENSMUSG00000099259	Mir6922	Gm27269|mmu-mir-6922	microRNA 6922	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25624564-2	chr2	25624064	25625064	+	687.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007995)	TTS (NM_007995)	-2559.0	NM_001109993	51875.0	Mm.271147	NM_001040130	ENSMUSG00000026939	Tmem141	1110065P14Rik|AI663999|D2Ertd217e	transmembrane protein 141	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127660607-2	chr10	127660107	127661107	+	687.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001122895)	TTS (NM_001122895)	6096.0	NM_001122895	17937.0	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50147275-2	chr11	50146775	50147775	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029745, intron 5 of 20)	intron (NM_029745, intron 5 of 20)	15915.0	NM_029745	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120620452-1	chr6	120619952	120620952	+	687.0	f0_balb.idr	Intergenic	RMER10A|LTR|ERVL	-45969.0	NM_001128151	330409.0	Mm.333357	NM_001128151	ENSMUSG00000071226	Cecr2	2610101O16Rik|2810409N01Rik|Gtl4|mKIAA1740	CECR2, histone acetyl-lysine reader	protein-coding	2.5	1.0	0.0	0.5	2.0	4.5
Merged-chr15-88865451-2	chr15	88864951	88865951	+	687.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145478, exon 6 of 6)	3' UTR (NM_145478, exon 6 of 6)	3257.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108954850-1	chr9	108954350	108955350	+	687.0	f1_balb.idr	intron (NM_007738, intron 2 of 117)	intron (NM_007738, intron 2 of 117)	1105.0	NM_007738	12836.0	Mm.6200	NM_007738	ENSMUSG00000025650	Col7a1	AW209154	collagen, type VII, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr10-20101547-2	chr10	20101047	20102047	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 17 of 29)	Lx9|LINE|L1	-47373.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96555519-2	chr3	96555094	96556094	+	687.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_040409)	TTS (NR_040409)	-2363.0	NM_023719	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	0.5	5.0	5.5	0.0	5.0	0.5
Merged-chr15-12699581-2	chr15	12699081	12700081	+	687.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107025.0	NM_001081064	68070.0	Mm.423205	NM_001081064	ENSMUSG00000022197	Pdzd2	4930537L06Rik|A930022H17Rik|Gm21706|Gm82|Pdzk3|mKIAA0300	PDZ domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36149508-2	chr1	36149008	36150008	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198899, intron 38 of 40)	intron (NM_198899, intron 38 of 40)	-5195.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44420539-2	chr11	44420039	44421039	+	687.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	20476.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119321094-2	chr9	119320594	119321594	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359582, intron 2 of 18)	intron (NM_001359582, intron 2 of 18)	1333.0	NR_045693	108737.0	Mm.293565	NM_133985	ENSMUSG00000036737	Oxsr1	2210022N24Rik|2810422B09Rik|AI462649|AW209236|Osr1|mKIAA1101	oxidative-stress responsive 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93444470-2	chr1	93443970	93444970	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133808, intron 1 of 27)	intron (NM_133808, intron 1 of 27)	1231.0	NM_001301364	110611.0	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84422287-1	chr8	84421787	84422787	+	687.0	f1_c57bl6.idr	intron (NM_001252060, intron 1 of 47)	intron (NM_001252060, intron 1 of 47)	6923.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	0.0	0.0	0.0	13.0	14.5	16.5
Merged-chr13-37648587-2	chr13	37648087	37649087	+	687.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-177451.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	1.5	18.0	0.0	0.0
Merged-chr15-10888083-1	chr15	10887583	10888583	+	687.0	f0_balb.idr	Intergenic	MER97a|DNA|hAT-Tip100	59032.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87848978-3	chr1	87848364	87849364	+	687.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4423.0	NM_177646	227333.0	Mm.277217	NM_177646	ENSMUSG00000070738	Dgkd	AI841987|D330025K09|DGKdelta|dgkd-2	diacylglycerol kinase, delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119756900-2	chr8	119756400	119757400	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026922, intron 26 of 26)	B4A|SINE|B4	21516.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98348668-2	chr11	98348168	98349168	+	687.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_144828, exon 1 of 7)	5' UTR (NM_144828, exon 1 of 7)	262.0	NM_144828	19049.0	Mm.45372	NM_144828	ENSMUSG00000061718	Ppp1r1b	AU040756|DARPP-32|Darpp32	protein phosphatase 1, regulatory (inhibitor) subunit 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97600938-2	chr3	97600438	97601438	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026539, intron 5 of 22)	(CAGAGA)n|Simple_repeat|Simple_repeat	9252.0	NM_026539	68058.0	Mm.31761	NM_026539	ENSMUSG00000028089	Chd1l	4432404A22Rik|Alc1|Snf2p	chromodomain helicase DNA binding protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-144254153-1	chr5	144253653	144254653	+	687.0	f1_balb.idr	intron (NM_001163709, intron 1 of 2)	ID_B1|SINE|B4	-1072.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	12.0	36.5	18.0	11.5	6.5	8.5
Merged-chr1-72712640-3	chr1	72712156	72713156	+	687.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009084, intron 3 of 3)	intron (NM_009084, intron 3 of 3)	1396.0	NM_009084	19981.0	Mm.21529	NM_009084	ENSMUSG00000046330	Rpl37a	-	ribosomal protein L37a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168884890-2	chr2	168884390	168885390	+	687.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70697.0	NM_009564	22722.0	Mm.2095	NM_009564	ENSMUSG00000027551	Zfp64	-	zinc finger protein 64	protein-coding	3.5	1.0	3.0	4.0	0.0	3.5
Merged-chr14-70241625-3	chr14	70241148	70242148	+	687.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360229, intron 6 of 12)	RLTR12B|LTR|ERVK	-33977.0	NM_011366	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-31851257-1	chr11	31850757	31851757	+	687.0	f0_balb.idr	Intergenic	Intergenic	-19683.0	NM_001290676	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	3.0	2.5	2.0	0.5	0.5	10.5
Merged-chr6-137688318-2	chr6	137687818	137688818	+	687.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39033.0	NM_007945	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-106760661-2	chr7	106760161	106761161	+	687.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-7275.0	NM_146602	258595.0	Mm.377585	NM_146602	ENSMUSG00000059087	Olfr698	MOR283-3	olfactory receptor 698	protein-coding	0.0	0.0	5.0	0.0	0.0	0.0
Merged-chr17-46260510-2	chr17	46260010	46261010	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028751, intron 8 of 10)	intron (NM_028751, intron 8 of 10)	6345.0	NM_001111142	224813.0	Mm.70999	NM_001111142	ENSMUSG00000071073	Lrrc73	Gm88	leucine rich repeat containing 73	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-149441439-1	chr3	149440939	149441939	+	687.0	f0_balb.idr	Intergenic	Intergenic	166702.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr12-76407355-2	chr12	76406855	76407855	+	687.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008301)	TTS (NM_008301)	2985.0	NM_008301	15512.0	Mm.296181	NM_008301	ENSMUSG00000059970	Hspa2	70kDa|HSP70.2|HSP70A2|Hsp70-2	heat shock protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-43477629-2	chr10	43477129	43478129	+	687.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1511.0	NM_199028	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-82276370-1	chr12	82275870	82276870	+	687.0	f0_balb.idr	intron (NM_001167983, intron 3 of 23)	intron (NM_001167983, intron 3 of 23)	-34979.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-58411763-3	chr3	58411263	58412263	+	687.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2957.0	NM_001081229	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120189961-4	chr10	120189455	120190455	+	686.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359184, intron 1 of 11)	intron (NM_001359184, intron 1 of 11)	11642.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	15.0	28.0	23.5	0.5	4.5	7.0
Merged-chr9-57723383-4	chr9	57722891	57723891	+	686.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153799, intron 3 of 6)	intron (NM_153799, intron 3 of 6)	14822.0	NM_153799	353190.0	Mm.268104	NM_153799	ENSMUSG00000038957	Edc3	AA517853|Lsm16|Yjdc	enhancer of mRNA decapping 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81448541-2	chr15	81448041	81449041	+	686.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347075, intron 8 of 9)	intron (NM_001347075, intron 8 of 9)	-17775.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21962841-2	chr19	21962347	21963347	+	686.875	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-176270.0	NM_001035239	226025.0	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding	0.0	0.0	3.5	0.0	4.5	5.5
Merged-chr17-65780346-2	chr17	65779846	65780846	+	686.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3009.0	NR_152099	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	1.0	4.0	4.0	0.0	3.5	1.0
Merged-chr2-173595674-2	chr2	173595174	173596174	+	686.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_027957, intron 6 of 14)	intron (NR_027957, intron 6 of 14)	-17333.0	NM_027303	70065.0	Mm.425115	NM_027303	ENSMUSG00000027517	Ankrd60	1700019A24Rik|1700030G11Rik	ankyrin repeat domain 60	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122547289-2	chr8	122546789	122547789	+	686.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037298, intron 1 of 50)	intron (NM_001037298, intron 1 of 50)	4040.0	NM_001037298	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	1.0	29.0	7.0	1.0	3.0	7.5
Merged-chr10-112106007-2	chr10	112105507	112106507	+	686.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347157, intron 4 of 5)	IAPEY4_LTR|LTR|ERVK	22653.0	NM_026223	67537.0	Mm.292351	NM_026223	ENSMUSG00000020214	Glipr1l2	4921508O11Rik	GLI pathogenesis-related 1 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92286696-2	chr16	92286196	92287196	+	686.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5693.0	NM_134110	246133.0	Mm.156736	NM_134110	ENSMUSG00000039672	Kcne2	2200002I16Rik|AW048273|MiRP1	potassium voltage-gated channel, Isk-related subfamily, gene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120340195-2	chr11	120339695	120340695	+	686.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	7218.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32167767-2	chr16	32167267	32168267	+	686.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-2173.0	NM_001347181	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58148596-3	chr13	58148085	58149085	+	686.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_126543, exon 2 of 2)	non-coding (NR_126543, exon 2 of 2)	1636.0	NR_126543	67339.0	Mm.121929	NR_126543	ENSMUSG00000097717	1700066J03Rik	-	RIKEN cDNA 1700066J03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120666292-2	chr8	120665792	120666792	+	686.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_010926, intron 1 of 4)	B3A|SINE|B2	1820.0	NM_010926	18117.0	Mm.2136	NM_010926	ENSMUSG00000031819	Emc8	Cox4nb|Fam158b|Noc4	ER membrane protein complex subunit 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36508020-3	chr18	36507518	36508518	+	686.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010415, intron 3 of 5)	intron (NM_010415, intron 3 of 5)	7787.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	1.5	0.0	1.0	2.5	0.0	1.0
Merged-chr19-41405996-2	chr19	41405496	41406496	+	686.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-20926.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	6.0	4.0	0.0	0.0	22.0	6.0
Merged-chr7-80439523-2	chr7	80439010	80440010	+	686.75	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-34074.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	11.0	26.5	17.0	1.0	12.5	6.5
Merged-chr9-110531392-2	chr9	110530892	110531892	+	686.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1205.0	NM_001081340	235626.0	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98770699-2	chr11	98770199	98771199	+	686.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_145434, exon 5 of 8)	exon (NM_145434, exon 5 of 8)	4678.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69757574-3	chr11	69757048	69758048	+	686.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291068, intron 1 of 28)	intron (NM_001291068, intron 1 of 28)	1085.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	11.0	13.5	24.5	11.0	37.5	17.0
Merged-chr10-8011253-3	chr10	8010749	8011749	+	686.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55126.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58326114-2	chr15	58325614	58326614	+	686.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1945.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	1.0	4.0	1.5	2.0	6.5	6.5
Merged-chr4-143210901-3	chr4	143210395	143211395	+	686.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256380, intron 1 of 7)	intron (NM_001256380, intron 1 of 7)	1814.0	NM_001081355	110593.0	Mm.332020	NM_001081355	ENSMUSG00000057637	Prdm2	4833427P12Rik|E330024L24Rik|Gm1033|Gm19732|KMT8|Riz|Riz1|Znfpr1c1	PR domain containing 2, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-53764900-3	chr9	53764403	53765403	+	686.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G3|LTR|ERVL-MaLR	-6632.0	NM_028060	72022.0	Mm.26159	NM_028060	ENSMUSG00000042195	Slc35f2	1500009K05Rik|AU019213	solute carrier family 35, member F2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35164308-3	chr2	35163799	35164799	+	686.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012018, intron 31 of 43)	intron (NM_012018, intron 31 of 43)	32065.0	NM_001290635	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165626554-3	chr1	165626045	165627045	+	686.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	7996.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60553418-2	chr2	60552918	60553918	+	686.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008867)	promoter-TSS (NM_008867)	-110.0	NM_008867	18779.0	Mm.5092	NM_008867	ENSMUSG00000054580	Pla2r1	Pla2-r|Pla2g1br|Pla2r	phospholipase A2 receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41326717-2	chr19	41326217	41327217	+	686.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 6 of 16)	intron (NM_031376, intron 6 of 16)	58353.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	4.5	10.0	8.5	2.0	3.0	0.0
Merged-chr14-14350979-2	chr14	14350500	14351500	+	686.650024	f1_balb.idr|f1_c57bl6.idr	intron (NM_008369, intron 8 of 11)	intron (NM_008369, intron 8 of 11)	4505.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	0.0	4.5	1.5	0.0	0.0	0.0
Merged-chr15-76329235-2	chr15	76328735	76329735	+	686.625	f1_balb.idr|f1_c57bl6.idr	exon (NM_175399, exon 2 of 3)	exon (NM_175399, exon 2 of 3)	1838.0	NM_175399	109075.0	Mm.322752	NM_175399	ENSMUSG00000034259	Exosc4	1110039I09Rik|1500001N04Rik|Rrp41	exosome component 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132539667-4	chr4	132539177	132540177	+	686.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172400, intron 2 of 8)	intron (NM_172400, intron 2 of 8)	4118.0	NM_172400	68598.0	Mm.29685	NM_172400	ENSMUSG00000054405	Dnajc8	1110021D09Rik|2010009J04Rik|AL024084|AU019262|AU044514	DnaJ heat shock protein family (Hsp40) member C8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102207180-2	chr7	102206719	102207719	+	686.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001287166, intron 1 of 19)	intron (NM_001287166, intron 1 of 19)	2648.0	NM_001287167	269966.0	Mm.439800	NM_022979	ENSMUSG00000063550	Nup98	4732457F17|AI849286|Nup96	nucleoporin 98	protein-coding	7.5	7.5	4.0	0.5	3.5	9.5
Merged-chr1-36914060-3	chr1	36913560	36914560	+	686.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 1 of 40)	intron (NM_018872, intron 1 of 40)	25467.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-27444149-2	chr16	27443649	27444649	+	686.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025615, intron 8 of 9)	intron (NM_001025615, intron 8 of 9)	55193.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55575862-2	chr14	55575362	55576362	+	686.583313	f1_balb.idr|f1_c57bl6.idr	exon (NM_026808, exon 1 of 2)	exon (NM_026808, exon 1 of 2)	188.0	NM_026808	68680.0	Mm.36758	NM_026808	ENSMUSG00000022215	Fitm1	1110028A07Rik|AV010547|Cg10671|Fit1	fat storage-inducing transmembrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-65189816-3	chr1	65189290	65190290	+	686.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310624, intron 1 of 41)	intron (NM_001310624, intron 1 of 41)	3105.0	NM_011086	18711.0	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE type zinc finger containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100497551-3	chr7	100497049	100498049	+	686.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011671, intron 4 of 7)	intron (NM_011671, intron 4 of 7)	4191.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	3.0	10.5	0.5	0.0	4.0	2.5
Merged-chr15-13371562-3	chr15	13371070	13372070	+	686.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-197895.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24627848-2	chr16	24627348	24628348	+	686.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	B2_Mm2|SINE|B2	-94007.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119860408-2	chr8	119859908	119860908	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-1897.0	NM_146219	234796.0	Mm.86446	NM_146219	ENSMUSG00000031828	Klhl36	-	kelch-like 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31175905-2	chr6	31175405	31176405	+	686.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	42569.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-56351881-2	chr13	56351381	56352381	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11019.0	NR_046061	100038494.0	Mm.370447	NR_046061	ENSMUSG00000074885	Gm10782	-	predicted gene 10782	ncRNA	1.0	0.0	1.0	3.0	0.0	0.0
Merged-chr6-31122354-2	chr6	31121854	31122854	+	686.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-59261.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101881044-2	chr5	101880544	101881544	+	686.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 44 of 66)	intron (NM_172882, intron 44 of 66)	115914.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67776083-3	chr18	67775573	67776573	+	686.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045376)	TTS (NR_045376)	1197.0	NM_028112	72124.0	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	1.0	3.5	3.5	7.0	0.0	4.5
Merged-chr13-24487171-2	chr13	24486671	24487671	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72049.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60031208-1	chr2	60030708	60031708	+	686.5	f0_balb.idr	intron (NM_001001182, intron 2 of 35)	intron (NM_001001182, intron 2 of 35)	94532.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152157452-2	chr4	152156952	152157952	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1415.0	NM_001301805	15206.0	Mm.57038	NM_008236	ENSMUSG00000028940	Hes2	HES-2	hes family bHLH transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-4195209-2	chr5	4194709	4195709	+	686.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042670, intron 1 of 1)	RMER10A|LTR|ERVL	2842.0	NM_001042670	208595.0	Mm.129815	NM_001042670	ENSMUSG00000053178	Mterf1b	Gm9897	mitochondrial transcription termination factor 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-49239144-2	chr2	49238644	49239644	+	686.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029924, intron 7 of 16)	intron (NM_029924, intron 7 of 16)	-6756.0	NM_001290656	109241.0	Mm.440436	NM_029924	ENSMUSG00000036792	Mbd5	9430004D19Rik|AA536666|AI426407|C030040A15Rik|Gm1630	methyl-CpG binding domain protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-58829917-2	chr7	58829417	58830417	+	686.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009728)	TTS (NM_009728)	171715.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105764700-2	chr3	105764200	105765200	+	686.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145541, intron 1 of 7)	intron (NM_145541, intron 1 of 7)	36681.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	5.5	3.5	3.0	14.0	5.5	8.0
Merged-chr13-41248294-2	chr13	41247794	41248794	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-1550.0	NM_001135577	108934.0	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76306352-2	chr15	76305852	76306852	+	686.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_153122, exon 3 of 27)	exon (NM_153122, exon 3 of 27)	893.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34692734-2	chr8	34692234	34693234	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52418.0	NR_040706	330734.0	Mm.149998	NR_040706	ENSMUSG00000109819	B930018H19Rik	B930018H19	RIKEN cDNA B930018H19 gene	ncRNA	4.0	2.0	0.0	0.0	2.0	0.0
Merged-chr13-12938424-2	chr13	12937924	12938924	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A1-int|LTR|ERVL-MaLR	66906.0	NM_031191	18811.0	Mm.88796	NM_031191	ENSMUSG00000079092	Prl2c2	Ghd2|MRP-1|PLF-1|Plf|Plf1	prolactin family 2, subfamily c, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126908265-2	chr8	126907799	126908799	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37622.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0.0	1.0	0.5	0.0	0.5	0.5
Merged-chr8-35424047-2	chr8	35423536	35424536	+	686.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48295.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	0.0	9.5	0.0	6.0	6.5	6.5
Merged-chr15-50872826-2	chr15	50872326	50873326	+	686.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_032000, intron 1 of 5)	intron (NM_032000, intron 1 of 5)	16223.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88206585-2	chr7	88206085	88207085	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71500.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41756652-3	chr4	41756166	41757166	+	686.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155499)	promoter-TSS (NR_155499)	456.0	NM_001302511	14430.0	Mm.439669	NM_016658	ENSMUSG00000036073	Galt	AW553376	galactose-1-phosphate uridyl transferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118603353-2	chr9	118602853	118603853	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-3356.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31433402-2	chr3	31432902	31433902	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-123083.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43784496-2	chr13	43783996	43784996	+	686.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289915)	promoter-TSS (NM_001289915)	-616.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184617606-2	chr1	184617106	184618106	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59915.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	11.5	21.0	32.0	20.0	54.0	33.0
Merged-chr11-69583972-2	chr11	69583472	69584472	+	686.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127233, intron 1 of 10)	intron (NM_001127233, intron 1 of 10)	3613.0	NM_001127233	22059.0	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38323499-2	chr18	38322999	38323999	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCb|LINE|L1	15494.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-94283340-2	chr6	94282840	94283840	+	686.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001286784, exon 1 of 23)	5' UTR (NM_001286784, exon 1 of 23)	577.0	NM_010367	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118130195-3	chr11	118129738	118130738	+	686.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1019.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-73168789-2	chr11	73168289	73169289	+	686.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033321, intron 10 of 12)	intron (NM_033321, intron 10 of 12)	8219.0	NM_001168470	66048.0	Mm.73608	NM_025318	ENSMUSG00000047260	Emc6	0610009E20Rik|0610025L18Rik|Tmem93	ER membrane protein complex subunit 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27366160-2	chr7	27365629	27366629	+	686.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199236, intron 12 of 18)	B4|SINE|B4	-10121.0	NM_138676	192192.0	Mm.21297	NM_138676	ENSMUSG00000089832	Shkbp1	B930062H15Rik|Sb1	Sh3kbp1 binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142395624-2	chr7	142395124	142396124	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7754.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	3.5	0.5	5.5	4.5	4.5	3.5
Merged-chr4-53065979-2	chr4	53065479	53066479	+	686.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013454, exon 30 of 50)	exon (NM_013454, exon 30 of 50)	54099.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117408457-2	chr5	117407957	117408957	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5545.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0.0	2.5	0.0	14.5	1.5	0.0
Merged-chr3-37693114-1	chr3	37692614	37693614	+	686.5	f0_balb.idr	Intergenic	C-rich|Low_complexity|Low_complexity	31246.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-65389099-2	chr14	65388599	65389599	+	686.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199029, intron 4 of 9)	intron (NM_199029, intron 4 of 9)	30423.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46794102-2	chr11	46793602	46794602	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16697.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	3.0	15.0	9.5	6.5	8.5	3.0
Merged-chr7-27161203-2	chr7	27160703	27161703	+	686.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357767, intron 1 of 4)	intron (NM_001357767, intron 1 of 4)	4525.0	NM_001357767	112406.0	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	0.5	3.5	0.5	0.5	3.5	0.5
Merged-chr5-18035483-2	chr5	18034983	18035983	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCa|LINE|L1	72913.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147896698-2	chr5	147896213	147897213	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1898.0	NM_027872	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	11.5	46.0	28.5	15.0	8.5	13.5
Merged-chr1-89631969-2	chr1	89631469	89632469	+	686.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 5 of 16)	intron (NM_001037136, intron 5 of 16)	51923.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32537021-2	chr17	32536521	32537521	+	686.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_024442, exon 2 of 13)	exon (NM_024442, exon 2 of 13)	464.0	NM_001356303	70101.0	Mm.30504	NM_024442	ENSMUSG00000048440	Cyp4f16	2310021J05Rik|AI746515	cytochrome P450, family 4, subfamily f, polypeptide 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125335899-1	chr6	125335399	125336399	+	686.5	f1_c57bl6.idr	intron (NM_011324, intron 3 of 11)	intron (NM_011324, intron 3 of 11)	-13824.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	0.0	0.0	2.0	8.5	2.0	0.5
Merged-chr3-131112458-2	chr3	131111958	131112958	+	686.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276403)	promoter-TSS (NM_001276403)	-333.0	NM_001276403	16842.0	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33553695-2	chr17	33553195	33554195	+	686.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172619)	TTS (NM_172619)	-2012.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49135846-2	chr7	49135346	49136346	+	686.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_154465, intron 3 of 3)	intron (NR_154465, intron 3 of 3)	26312.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53947532-2	chr19	53947032	53948032	+	686.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019658, intron 1 of 8)	B3|SINE|B2	2656.0	NM_019658	56392.0	Mm.228669	NM_019658	ENSMUSG00000024976	Shoc2	AU017287|Sur8|mKIAA0862	soc-2 (suppressor of clear) homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108742255-4	chr6	108741716	108742716	+	686.483337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-40843.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	3.0	1.5	0.0	0.0	0.0	0.0
Merged-chr6-50223213-3	chr6	50222700	50223700	+	686.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018769, intron 5 of 9)	ORR1E|LTR|ERVL-MaLR	38569.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116336470-3	chr4	116335965	116336965	+	686.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042743, intron 6 of 29)	RLTR12B|LTR|ERVK	113718.0	NM_001355586	18710.0	Mm.253819	NM_181585	ENSMUSG00000028698	Pik3r3	AA414954|p55|p55pik	phosphoinositide-3-kinase regulatory subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108573975-2	chr9	108573475	108574475	+	686.43335	f1_balb.idr|f1_c57bl6.idr	exon (NM_031392, exon 3 of 6)	exon (NM_031392, exon 3 of 6)	4083.0	NM_026378	67789.0	Mm.458081	NM_026378	ENSMUSG00000019039	Dalrd3	6330580J24Rik|C77829|mir-425	DALR anticodon binding domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-8780639-4	chr13	8780150	8781150	+	686.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	90394.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118238173-3	chr11	118237721	118238721	+	686.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	10371.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34111386-3	chr10	34110882	34111882	+	686.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14863.0	NM_178908	103511.0	Mm.66334	NM_178908	ENSMUSG00000049872	Fam26e	BB146404|Calhm5	family with sequence similarity 26, member E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66272264-2	chr14	66271751	66272751	+	686.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	8801.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	2.0	5.5	7.0	8.5	6.0	4.0
Merged-chr3-136254902-2	chr3	136254412	136255412	+	686.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001310749, exon 2 of 16)	exon (NM_001310749, exon 2 of 16)	71154.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	6.0	17.5	4.0	11.0	2.5	3.0
Merged-chr10-67220452-2	chr10	67219952	67220952	+	686.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001242396, exon 7 of 25)	exon (NM_001242396, exon 7 of 25)	34702.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85257944-2	chr12	85257444	85258444	+	686.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175337, intron 5 of 11)	B3|SINE|B2	-11959.0	NR_105903	102466769.0		NR_105903	ENSMUSG00000098263	Mir6938	Gm27519|mmu-mir-6938	microRNA 6938	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-181273051-2	chr1	181272551	181273551	+	686.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61073.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86668039-3	chr17	86667556	86668556	+	686.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85808.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4097451-2	chr11	4096951	4097951	+	686.333313	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_144520, exon 12 of 12)	3' UTR (NM_144520, exon 12 of 12)	-2020.0	NM_026443	67900.0	Mm.41719	NM_026443	ENSMUSG00000004748	Mtfp1	1700020C11Rik|2610507A21Rik|AV005788|Mtp18	mitochondrial fission process 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45883429-3	chr4	45882928	45883928	+	686.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305421, intron 17 of 18)	intron (NM_001305421, intron 17 of 18)	-6875.0	NM_198660	381522.0	Mm.54220	NM_198660	ENSMUSG00000035539	Ccdc180	E230008N13Rik|Gm1025	coiled-coil domain containing 180	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42017474-3	chr19	42016998	42017998	+	686.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	-18540.0	NM_020033	56642.0	Mm.143737	NM_020033	ENSMUSG00000025172	Ankrd2	Arpp|mArpp	ankyrin repeat domain 2 (stretch responsive muscle)	protein-coding	8.5	34.0	24.5	4.5	39.5	30.5
Merged-chr16-10499324-2	chr16	10498824	10499824	+	686.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302619, intron 2 of 19)	intron (NM_001302619, intron 2 of 19)	9543.0	NM_001243761	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-84680130-2	chr7	84679630	84680630	+	686.299988	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360579)	promoter-TSS (NM_001360579)	-734.0	NM_001360581	65098.0	Mm.209349	NM_022985	ENSMUSG00000030629	Zfand6	3110005P07Rik|Awp1|Za20d3	zinc finger, AN1-type domain 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-35235615-3	chr5	35235115	35236115	+	686.266663	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42951.0	NM_007418	11553.0	Mm.57205	NM_007418	ENSMUSG00000045318	Adra2c	Adra-2c|[a]2C|alpha2-C4|alpha2C	adrenergic receptor, alpha 2c	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120483834-2	chr11	120483334	120484334	+	686.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027204)	promoter-TSS (NM_027204)	-803.0	NM_027204	56282.0	Mm.133851	NM_027204	ENSMUSG00000039640	Mrpl12	0610034O11Rik|1500031N16Rik|L12mt|MRP-L12|Rpml12	mitochondrial ribosomal protein L12	protein-coding	0.0	0.0	1.0	0.0	0.0	4.0
Merged-chr2-167941650-2	chr2	167941150	167942150	+	686.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	B3A|SINE|B2	9323.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81204759-4	chr7	81204338	81205338	+	686.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8966.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180052231-2	chr2	180051731	180052731	+	686.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_178750, intron 1 of 10)	intron (NM_178750, intron 1 of 10)	9748.0	NM_178750	269397.0	Mm.63068	NM_178750	ENSMUSG00000039086	Ss18l1	A230053O16Rik|CREST	SS18, nBAF chromatin remodeling complex subunit like 1	protein-coding	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr17-5610633-2	chr17	5610133	5611133	+	686.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	118033.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166606057-2	chr2	166605610	166606610	+	686.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 10 of 39)	MER102b|DNA|hAT-Charlie	41588.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88244106-2	chr1	88243587	88244587	+	686.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 22 of 41)	intron (NM_001281466, intron 22 of 41)	17067.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121635751-3	chr8	121635257	121636257	+	686.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080855, intron 1 of 12)	intron (NM_080855, intron 1 of 12)	16176.0	NM_080855	142682.0	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78596976-3	chr9	78596468	78597468	+	686.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8923.0	NM_001276452	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-140712906-3	chr6	140712361	140713361	+	686.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85976.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105973436-2	chr1	105972877	105973877	+	686.200012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16905.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	0.5	19.5	4.5	0.5	4.0	16.0
Merged-chr9-107728615-2	chr9	107728115	107729115	+	686.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18140.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128211143-2	chr10	128210643	128211643	+	686.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_025716, exon 2 of 2)	exon (NM_025716, exon 2 of 2)	651.0	NM_025716	66701.0	Mm.29694	NM_025716	ENSMUSG00000051346	Spryd4	4633402N23Rik|AA114801	SPRY domain containing 4	protein-coding	0.0	0.0	3.5	0.0	0.0	3.5
Merged-chr8-84656109-2	chr8	84655609	84656609	+	686.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6743.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	2.0	0.0	6.5	1.5	20.0	12.0
Merged-chr13-51637295-2	chr13	51636795	51637795	+	686.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	-7937.0	NM_025415	66197.0	Mm.222228	NM_025415	ENSMUSG00000062248	Cks2	1110038L14Rik|CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17235577-2	chr12	17235077	17236077	+	686.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-31018.0	NM_027959	71853.0	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	2.0	8.5	0.0	0.0	1.5	0.0
Merged-chr17-31079372-3	chr17	31078897	31079897	+	686.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	21703.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	11.5	18.5	32.0	18.0	7.0	23.0
Merged-chr10-8785066-3	chr10	8784548	8785548	+	686.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 6 of 19)	intron (NM_175155, intron 6 of 19)	101022.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	8.0	4.5	2.5	0.0	0.0	3.0
Merged-chr14-26610824-2	chr14	26610324	26611324	+	686.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285467, intron 11 of 19)	ID_B1|SINE|B4	-27310.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51734320-2	chr13	51733820	51734820	+	686.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013660, intron 2 of 15)	intron (NM_013660, intron 2 of 15)	59427.0	NM_001281880	20354.0	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	0.0	3.0	0.0	0.0	3.0	0.0
Merged-chr13-74535077-2	chr13	74534577	74535577	+	686.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41127.0	NM_146231	235956.0		NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128884122-3	chr4	128883613	128884613	+	686.133301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178110)	promoter-TSS (NM_178110)	-27.0	NM_178110	67525.0	Mm.30653	NM_178110	ENSMUSG00000041000	Trim62	6330414G21Rik|AI450348|Dear1	tripartite motif-containing 62	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-59043547-2	chr19	59043047	59044047	+	686.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 3 of 16)	intron (NM_001114312, intron 3 of 16)	32522.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86667796-3	chr4	86667279	86668279	+	686.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007408, intron 3 of 7)	intron (NM_007408, intron 3 of 7)	2280.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108625806-3	chr8	108625324	108626324	+	686.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41147.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0.5	7.0	1.5	0.5	1.0	0.0
Merged-chr11-16752224-3	chr11	16751762	16752762	+	686.049988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007912)	promoter-TSS (NM_007912)	59.0	NM_007912	13649.0	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	0.0	2.5	1.0	8.0	1.0	0.0
Merged-chr12-98316075-4	chr12	98315588	98316588	+	686.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47453.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83729463-5	chr8	83728922	83729922	+	686.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163031, exon 5 of 18)	exon (NM_001163031, exon 5 of 18)	-5438.0	NR_106188	102465897.0		NR_106188	ENSMUSG00000098465	Mir1668	Gm27590|mmu-mir-1668	microRNA 1668	ncRNA	7.0	7.5	6.5	5.0	7.5	11.0
Merged-chr1-16191351-3	chr1	16190846	16191846	+	686.022217	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85464.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-48668825-2	chr13	48668325	48669325	+	686.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5789.0	NM_007526	12022.0	Mm.42241	NM_007526	ENSMUSG00000021381	Barx1	-	BarH-like homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76473151-2	chr11	76472651	76473651	+	686.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 3 of 21)	intron (NM_001346670, intron 3 of 21)	-4686.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	3.0	0.0	4.0	0.0	0.0	0.0
Merged-chr15-76623137-2	chr15	76622637	76623637	+	686.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025842, intron 7 of 9)	intron (NM_025842, intron 7 of 9)	2947.0	NM_025842	66914.0	Mm.30028	NM_025842	ENSMUSG00000115987	Vps28	1110014J03Rik|CIIA|D730005C08Rik	vacuolar protein sorting 28	protein-coding	0.0	0.0	0.0	1.5	0.0	0.0
Merged-chr3-86122800-2	chr3	86122300	86123300	+	686.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082414, intron 12 of 14)	intron (NM_001082414, intron 12 of 14)	16058.0	NR_004417	19870.0		NR_004417	ENSMUSG00000064984	Snord73a	Rnu73a|U73a	small nucleolar RNA, C/D box U73A	snoRNA	2.0	3.0	1.0	2.0	4.0	1.0
Merged-chr12-100492805-1	chr12	100492305	100493305	+	686.0	f0_balb.idr	intron (NM_001033213, intron 3 of 19)	intron (NM_001033213, intron 3 of 19)	28017.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-100437599-2	chr3	100437099	100438099	+	686.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040543, exon 3 of 3)	non-coding (NR_040543, exon 3 of 3)	11194.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-136432174-2	chr3	136431674	136432674	+	686.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17175.0	NR_040592	70055.0	Mm.261063	NR_040592	ENSMUSG00000099508	1700030L20Rik	-	RIKEN cDNA 1700030L20 gene	ncRNA	7.0	0.5	2.0	19.5	0.0	1.0
Merged-chr18-80497066-3	chr18	80496546	80497546	+	686.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27379.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46244452-2	chr11	46243952	46244952	+	686.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252459, intron 21 of 30)	intron (NM_001252459, intron 21 of 30)	8895.0	NM_177075	320116.0	Mm.39600	NM_177075	ENSMUSG00000048721	Fndc9	C030019I05Rik	fibronectin type III domain containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-17523197-2	chr11	17522697	17523697	+	686.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	265509.0	NM_001330649	57316.0	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120795092-2	chr11	120794592	120795592	+	686.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026824, intron 2 of 13)	intron (NM_026824, intron 2 of 13)	1303.0	NM_026824	68730.0	Mm.180622	NM_026824	ENSMUSG00000025155	Dus1l	1110032N12Rik	dihydrouridine synthase 1-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-42917405-2	chr4	42916905	42917905	+	686.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001346526, exon 1 of 9)	5' UTR (NM_001346526, exon 1 of 9)	162.0	NM_172690	230085.0	Mm.240965	NM_172690	ENSMUSG00000036062	Phf24	GINIP|N28178	PHD finger protein 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73517444-3	chr12	73516885	73517885	+	686.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29010.0	NM_178715	238257.0	Mm.251196	NM_178715	ENSMUSG00000034435	Tmem30b	9130011B11Rik	transmembrane protein 30B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156044383-1	chr1	156043883	156044883	+	686.0	f1_balb.idr	intron (NM_172843, intron 2 of 6)	intron (NM_172843, intron 2 of 6)	3522.0	NM_022329	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	7.0	3.5	4.5	9.5	6.5	12.0
Merged-chr6-120152402-2	chr6	120151902	120152902	+	686.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-41421.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61803932-2	chr14	61803425	61804425	+	686.0	f0_balb.idr|f1_balb.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-121552.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	25.0	29.5	42.5	17.0	50.5	19.5
Merged-chr12-102305086-2	chr12	102304586	102305586	+	686.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	21445.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71331500-2	chr8	71331000	71332000	+	686.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 11 of 39)	B1_Mus1|SINE|Alu	-35348.0	NM_001145780	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76349391-2	chr15	76348891	76349891	+	686.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025340, intron 2 of 8)	URR1B|DNA|hAT-Charlie	1719.0	NM_025340	106025.0	Mm.41463	NM_025340	ENSMUSG00000022552	Sharpin	0610041B22Rik|AW121341|RBCKL1|SIPL1|cpdm	SHANK-associated RH domain interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-41199089-1	chr8	41198589	41199589	+	686.0	f0_balb.idr	intron (NM_145594, intron 5 of 7)	intron (NM_145594, intron 5 of 7)	16067.0	NM_145594	234199.0	Mm.277955	NM_145594	ENSMUSG00000031594	Fgl1	Mfire1	fibrinogen-like protein 1	protein-coding	0.0	0.0	11.5	5.5	0.0	0.0
Merged-chr12-3361491-2	chr12	3360991	3361991	+	686.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID|SINE|ID	-3641.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-46243650-2	chr15	46243150	46244150	+	686.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80935.0	NR_045509	71120.0	Mm.158571	NR_045509	ENSMUSG00000099751	1700022A22Rik	4933413D07Rik	RIKEN cDNA 1700022A22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-15399646-2	chr7	15399146	15400146	+	686.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	10795.0	NM_145708	246792.0	Mm.26391	NM_145708	ENSMUSG00000074369	Obox2	-	oocyte specific homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21959801-2	chr9	21959301	21960301	+	686.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010149, exon 7 of 8)	exon (NM_010149, exon 7 of 8)	3775.0	NM_010149	13857.0	Mm.2653	NM_010149	ENSMUSG00000006235	Epor	-	erythropoietin receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94549676-2	chr11	94549176	94550176	+	686.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013381)	promoter-TSS (NM_001013381)	-469.0	NM_001013381	237926.0	Mm.342275	NM_001013381	ENSMUSG00000039096	Rsad1	B430319G23|BC056485	radical S-adenosyl methionine domain containing 1	protein-coding	13.5	26.5	42.0	6.0	59.0	28.0
Merged-chr15-8632333-2	chr15	8631833	8632833	+	686.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78474.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0.0	0.5	0.0	0.0	0.5	0.0
Merged-chr17-84349134-2	chr17	84348634	84349634	+	686.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 26 of 37)	intron (NM_183021, intron 26 of 37)	117074.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5351628-1	chr18	5351128	5352128	+	686.0	f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-16821.0	NM_001360447	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	5.0	0.0	0.0	0.0	2.5	0.0
Merged-chr1-151250347-2	chr1	151249847	151250847	+	686.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94139.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137504366-2	chr5	137503866	137504866	+	686.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1937.0	NM_028753	74097.0	Mm.290242	NM_028753	ENSMUSG00000029715	Pop7	0610037N12Rik|AI852017|Rpp20	processing of precursor 7, ribonuclease P family, (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27912580-1	chr17	27912080	27913080	+	686.0	f1_balb.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	3274.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	11.0	28.0	41.0	9.0	56.0	47.5
Merged-chr19-3387691-2	chr19	3387191	3388191	+	686.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1166.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14822968-2	chr8	14822468	14823468	+	686.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 10 of 15)	intron (NM_172910, intron 10 of 15)	-65568.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr7-89372140-3	chr7	89371637	89372637	+	686.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 1 of 14)	intron (NM_001360746, intron 1 of 14)	32085.0	NM_001360746	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134540726-1	chr4	134540226	134541226	+	686.0	f1_balb.idr	exon (NM_029100, exon 11 of 12)	exon (NM_029100, exon 11 of 12)	-5339.0	NM_029759	76824.0	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	0.0	0.0	3.5	0.0	2.0	0.0
Merged-chr9-54474253-3	chr9	54473782	54474782	+	686.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172771, intron 3 of 43)	intron (NM_172771, intron 3 of 43)	27344.0	NM_172771	235380.0	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-98151422-2	chr3	98150922	98151922	+	686.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9212.0	NM_027665	71078.0	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70220546-2	chr11	70220046	70221046	+	686.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172371, exon 1 of 4)	exon (NM_172371, exon 1 of 4)	448.0	NM_172371	69309.0	Mm.93266	NM_172371	ENSMUSG00000044367	Slc16a13	1700007D07Rik	solute carrier family 16 (monocarboxylic acid transporters), member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-7850364-2	chr17	7849864	7850864	+	686.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45390.0	NM_001081416	68655.0	Mm.379161	NM_001081416	ENSMUSG00000071984	Fndc1	1110027O12Rik|1110051A18Rik|mKIAA1866	fibronectin type III domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127048780-2	chr10	127048280	127049280	+	686.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010009, intron 1 of 8)	intron (NM_010009, intron 1 of 8)	534.0	NM_010009	13115.0	Mm.6216	NM_010009	ENSMUSG00000006724	Cyp27b1	Cp2b|Cyp1|Cyp27b|Cyp40|P450c1|Pddr|Vdd1|Vddr|VddrI|Vdr	cytochrome P450, family 27, subfamily b, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136054077-3	chr4	136053554	136054554	+	686.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025919)	promoter-TSS (NM_025919)	-683.0	NM_025919	67025.0	Mm.276856	NM_025919	ENSMUSG00000059291	Rpl11	2010203J19Rik	ribosomal protein L11	protein-coding	0.0	0.0	0.5	0.0	2.5	1.0
Merged-chr1-16187645-2	chr1	16187145	16188145	+	686.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	81763.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21810319-1	chr10	21809819	21810819	+	686.0	f1_c57bl6.idr	Intergenic	Intergenic	-71865.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	1.5	0.0	4.0	0.0	1.5	0.5
Merged-chr1-162566704-1	chr1	162566204	162567204	+	686.0	f1_balb.idr	Intergenic	LTR80B|LTR|ERVL	-3811.0	NM_001356527	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	5.0	19.0	2.5	11.0	6.5	19.0
Merged-chr5-16326853-1	chr5	16326353	16327353	+	686.0	f0_balb.idr	intron (NM_001110843, intron 20 of 38)	intron (NM_001110843, intron 20 of 38)	-226642.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-60246257-1	chr5	60245757	60246757	+	686.0	f1_balb.idr	Intergenic	Lx3C|LINE|L1	-260255.0	NR_040682	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	0.0	5.5	0.0	1.0	0.0	1.0
Merged-chr10-56876289-2	chr10	56875789	56876789	+	686.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	444308.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-77281593-2	chr1	77281122	77282122	+	686.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	215146.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	8.5	45.0	14.5	30.0	48.5	40.0
Merged-chr6-38357141-1	chr6	38356641	38357641	+	686.0	f1_balb.idr	Intergenic	Intergenic	-2538.0	NM_028864	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132140330-2	chr1	132139830	132140830	+	686.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008795)	promoter-TSS (NM_008795)	-645.0	NM_008795	18557.0	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95193868-2	chr4	95193368	95194368	+	686.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-141646.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	6.0	0.5	0.5	0.0	0.0	0.5
Merged-chr2-130276862-1	chr2	130276362	130277362	+	686.0	f1_balb.idr	intron (NR_149733, intron 7 of 12)	intron (NR_149733, intron 7 of 12)	-1164.0	NR_028528	100217428.0		NR_028528	ENSMUSG00000065272	Snord57	MBII-434	small nucleolar RNA, C/D box 57	snoRNA	3.0	2.0	4.5	10.0	3.0	2.5
Merged-chr12-105034215-2	chr12	105033715	105034715	+	686.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028419, intron 1 of 1)	PB1D10|SINE|Alu	1597.0	NM_028419	73046.0	Mm.29128	NM_028419	ENSMUSG00000021102	Glrx5	-	glutaredoxin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4147122-2	chr7	4146622	4147622	+	686.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172736, exon 15 of 15)	3' UTR (NM_172736, exon 15 of 15)	2750.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-118463639-2	chr5	118463139	118464139	+	686.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97080.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111035463-2	chr8	111034963	111035963	+	686.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146217, intron 1 of 20)	intron (NM_146217, intron 1 of 20)	1621.0	NM_146217	234734.0	Mm.24174	NM_146217	ENSMUSG00000031960	Aars	AI316495|C76919|sti	alanyl-tRNA synthetase	protein-coding	0.0	0.0	1.0	0.0	2.0	0.0
Merged-chr12-112865609-2	chr12	112865109	112866109	+	686.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4693.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23996239-1	chr17	23995739	23996739	+	686.0	f1_c57bl6.idr	intron (NM_133731, intron 4 of 5)	intron (NM_133731, intron 4 of 5)	1861.0	NM_133731	70835.0	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	4.0	4.5	6.5	0.0	0.0	6.0
Merged-chr10-61344181-4	chr10	61343641	61344641	+	685.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013753, exon 11 of 20)	exon (NM_013753, exon 11 of 20)	39382.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-102702074-2	chr3	102701558	102702558	+	685.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32712.0	NM_027533	70747.0	Mm.27469	NM_027533	ENSMUSG00000027858	Tspan2	6330415F13Rik|B230119D02Rik|tspan-2	tetraspanin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148165729-2	chr4	148165236	148166236	+	685.900024	f1_balb.idr|f1_c57bl6.idr	exon (NM_176848, exon 5 of 6)	exon (NM_176848, exon 5 of 6)	5068.0	NM_176848	230904.0	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr17-27567908-2	chr17	27567414	27568414	+	685.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2187.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	25.0	15.0	12.5	4.5	17.0	15.0
Merged-chr10-68279071-2	chr10	68278564	68279564	+	685.833374	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023598)	promoter-TSS (NM_023598)	-338.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	69.0	110.5	98.0	78.5	102.5	61.0
Merged-chr18-50129747-2	chr18	50129247	50130247	+	685.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008292, intron 1 of 23)	intron (NM_008292, intron 1 of 23)	1546.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55444988-2	chr11	55444488	55445488	+	685.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16220.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69752892-2	chr11	69752392	69753392	+	685.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291068, intron 1 of 28)	B3A|SINE|B2	5741.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.0	1.5	1.5	0.0	0.0	4.5
Merged-chr4-46040999-3	chr4	46040499	46041499	+	685.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021883, intron 1 of 9)	MIR3|SINE|MIR	1777.0	NM_021883	21916.0	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142900316-2	chr5	142899816	142900816	+	685.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5078.0	NM_001033312	231863.0	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17204611-2	chr16	17204111	17205111	+	685.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3119.0	NM_009456	22195.0	Mm.3074	NM_009456	ENSMUSG00000038965	Ube2l3	C79827|UbcM4|Ubce7	ubiquitin-conjugating enzyme E2L 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-73025292-4	chr11	73024806	73025806	+	685.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018883, intron 1 of 15)	intron (NM_018883, intron 1 of 15)	6298.0	NM_018883	55984.0	Mm.9998	NM_018883	ENSMUSG00000020785	Camkk1	AI846603|CaMKKalpha|Camkk	calcium/calmodulin-dependent protein kinase kinase 1, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10692537-5	chr19	10692072	10693072	+	685.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	intron (NM_001361958, intron 1 of 4)	3837.0	NM_001361959	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-59584858-4	chr1	59584363	59585363	+	685.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013771, intron 12 of 19)	intron (NM_001013771, intron 12 of 19)	60569.0	NM_001357842	381260.0	Mm.486706	NM_001013771	ENSMUSG00000047361	Gm973	AW554518	predicted gene 973	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr9-85424125-3	chr9	85423613	85424613	+	685.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a-int|LTR|ERVL-MaLR	-96963.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	9.0	1.5	7.0	0.5	1.0	1.0
Merged-chr11-21096689-4	chr11	21096196	21097196	+	685.770813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023324, intron 1 of 6)	Lx8|LINE|L1	-2173.0	NR_151470	108167888.0		NR_151470		2610024D14Rik	-	ATP synthase subunit g, mitochondrial pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35554094-2	chr7	35553594	35554594	+	685.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_033080, intron 1 of 2)	B1_Mus2|SINE|Alu	1834.0	NM_033080	110959.0	Mm.410206	NM_033080	ENSMUSG00000034875	Nudt19	D7Rp2|D7Rp2-r|D7Rp2-s|D7Rp2e|RP2-r|RP2-s	nudix (nucleoside diphosphate linked moiety X)-type motif 19	protein-coding	0.0	5.5	1.5	0.0	5.5	1.5
Merged-chr5-125412699-2	chr5	125412199	125413199	+	685.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	21349.0	NM_203319	208144.0	Mm.296385	NM_203319	ENSMUSG00000029480	Dhx37	Gm1050|Gm451|mKIAA1517	DEAH (Asp-Glu-Ala-His) box polypeptide 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117433983-2	chr8	117433483	117434483	+	685.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 9 of 20)	intron (NM_028941, intron 9 of 20)	-19040.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99421943-3	chr15	99421505	99422505	+	685.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001001884)	TTS (NM_001001884)	28786.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	4.5	6.5	6.0	1.0	10.5	0.0
Merged-chr14-120359827-3	chr14	120359328	120360328	+	685.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	53376.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	1.0	7.0	2.5	1.0	7.5	2.5
Merged-chr19-5409546-2	chr19	5409046	5410046	+	685.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_027938, intron 1 of 3)	L1M4|LINE|L1	2731.0	NR_027938	74931.0	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	40.0	115.0	84.0	29.5	86.5	74.5
Merged-chr7-98052211-2	chr7	98051760	98052760	+	685.666626	f0_c57.idr|f1_c57bl6.idr	exon (NM_001256082, exon 48 of 49)	exon (NM_001256082, exon 48 of 49)	56988.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	7.0	14.5	9.5	13.5	5.0	11.0
Merged-chr9-123991706-3	chr9	123991201	123992201	+	685.633362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13293.0	NM_007718	12770.0	Mm.423532	NM_007718	ENSMUSG00000064039	Ccr1l1	Cmkbr1l1	chemokine (C-C motif) receptor 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128284146-3	chr10	128283613	128284613	+	685.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019963, exon 19 of 24)	exon (NM_019963, exon 19 of 24)	13615.0	NM_019963	20847.0	Mm.293120	NM_019963	ENSMUSG00000040033	Stat2	1600010G07Rik|AW496480	signal transducer and activator of transcription 2	protein-coding	0.0	0.0	1.0	2.0	0.0	2.5
Merged-chr2-90451163-2	chr2	90450663	90451663	+	685.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 14 of 23)	(TG)n|Simple_repeat|Simple_repeat	28011.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	1.0	0.0	1.0	1.0	0.0	1.0
Merged-chr2-6100495-2	chr2	6099995	6100995	+	685.583374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001159657, exon 4 of 4)	exon (NM_001159657, exon 4 of 4)	29690.0	NM_144883	227545.0	Mm.133542	NM_144883	ENSMUSG00000045319	Proser2	5430407P10Rik|AU067770	proline and serine rich 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-42260110-2	chr18	42259614	42260614	+	685.583374	f0_balb.idr|f1_c57bl6.idr	intron (NM_134137, intron 1 of 31)	intron (NM_134137, intron 1 of 31)	1957.0	NM_134137	107045.0	Mm.312170	NM_134137	ENSMUSG00000024493	Lars	2310045K21Rik|3110009L02Rik|AW536573|mKIAA1352	leucyl-tRNA synthetase	protein-coding	0.0	7.0	1.5	6.0	9.0	7.0
Merged-chr3-38235587-3	chr3	38235080	38236080	+	685.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27461.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0.0	0.5	1.5	0.0	0.5	0.0
Merged-chr1-138096678-2	chr1	138096178	138097178	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 10 of 28)	Lx3_Mus|LINE|L1	78448.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116263312-2	chr6	116262812	116263812	+	685.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001309446)	promoter-TSS (NM_001309446)	-907.0	NM_001309446	67492.0	Mm.272772	NM_001081317	ENSMUSG00000042213	Zfand4	Anubl1	zinc finger, AN1-type domain 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121998432-2	chr14	121997932	121998932	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 7 of 8)	intron (NM_026861, intron 7 of 8)	-33239.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	0.0	2.0	0.0	3.0	1.0	0.0
Merged-chr5-36489344-2	chr5	36488844	36489844	+	685.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4756.0	NM_025725	66717.0	Mm.42368	NM_025725	ENSMUSG00000050677	Ccdc96	4921513E08Rik	coiled-coil domain containing 96	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-72302186-2	chr11	72301686	72302686	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291153, intron 1 of 3)	intron (NM_001291153, intron 1 of 3)	557.0	NM_001037713	327959.0	Mm.291131	NM_001037713	ENSMUSG00000040483	Xaf1	Fbox39	XIAP associated factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62123476-2	chr15	62122976	62123976	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 2 of 6)	intron (NR_132746, intron 2 of 6)	84219.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-31277660-2	chr9	31277160	31278160	+	685.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	6259.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-54509234-2	chr8	54508734	54509734	+	685.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20764.0	NM_029701	76687.0	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik|SPC22/23	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-174175632-3	chr1	174175132	174176132	+	685.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011465, intron 2 of 51)	intron (NM_011465, intron 2 of 51)	2856.0	NM_011465	20739.0	Mm.200611	NM_011465	ENSMUSG00000026532	Spta1	AF093576|AI451697|Spna-1|Spna1|ha|ihj|nmf4|sph	spectrin alpha, erythrocytic 1	protein-coding	3.5	17.0	8.5	6.5	9.5	8.0
Merged-chr12-17694993-2	chr12	17694493	17695493	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	ID4|SINE|ID	4184.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65586695-2	chr9	65586195	65587195	+	685.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357526)	promoter-TSS (NM_001357526)	-465.0	NR_151702	208084.0	Mm.211032	NM_172453	ENSMUSG00000041064	Pif1	4631410M14|AI449441	PIF1 5'-to-3' DNA helicase	protein-coding	0.0	4.0	0.0	0.0	1.0	0.0
Merged-chr4-47314885-2	chr4	47314385	47315385	+	685.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38337.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95837353-2	chr16	95836853	95837853	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040485, intron 3 of 3)	intron (NR_040485, intron 3 of 3)	61360.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3784707-2	chr4	3784208	3785208	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 12 of 12)	intron (NM_001111096, intron 12 of 12)	50947.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	2.5	0.5	6.5	2.0	4.5	5.0
Merged-chr5-76954695-3	chr5	76954194	76955194	+	685.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356974, intron 1 of 8)	RMER6A|LTR|ERVK	-3116.0	NM_172146	231327.0	Mm.202337	NM_172146	ENSMUSG00000029246	Ppat	5730454C12Rik|AA408689|AA675351|AI507113|C79945	phosphoribosyl pyrophosphate amidotransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43784181-2	chr7	43783681	43784681	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133712, intron 4 of 5)	intron (NM_133712, intron 4 of 5)	3127.0	NM_133712	69540.0	Mm.46421	NM_133712	ENSMUSG00000030693	Klk10	2300002A13Rik|NES1|PRSSL1	kallikrein related-peptidase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-90261914-2	chr14	90261414	90262414	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045712, intron 7 of 8)	intron (NR_045712, intron 7 of 8)	135023.0	NR_045712	74967.0	Mm.390704	NR_045712	ENSMUSG00000115001	4930474H20Rik	-	RIKEN cDNA 4930474H20 gene	ncRNA	0.0	0.0	2.5	0.0	0.0	0.0
Merged-chr14-52008365-2	chr14	52007865	52008865	+	685.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001253695, exon 3 of 5)	exon (NM_001253695, exon 3 of 5)	6193.0	NM_001253695	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	0.0	4.0	0.5	0.0	3.5	0.5
Merged-chr1-125382819-2	chr1	125382319	125383319	+	685.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	52908.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79774734-2	chr10	79774234	79775234	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-2540.0	NM_031380	83554.0	Mm.251710	NM_031380	ENSMUSG00000020325	Fstl3	E030038F23Rik|Flrg	follistatin-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81628831-2	chr10	81628331	81629331	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027480, intron 1 of 19)	intron (NM_027480, intron 1 of 19)	291.0	NM_027480	70615.0	Mm.304382	NM_027480	ENSMUSG00000054708	Ankrd24	4631433D01Rik|5730519E19Rik|D10Bur2e	ankyrin repeat domain 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-133775469-2	chr7	133774969	133775969	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286031, intron 1 of 11)	intron (NM_001286031, intron 1 of 11)	1334.0	NM_001286032	101437.0	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32|muDDX32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62743270-2	chr4	62742770	62743770	+	685.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69296.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55837984-2	chr16	55837484	55838484	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159395, intron 1 of 12)	B1_Mus2|SINE|Alu	657.0	NM_030612	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147346834-2	chr4	147346334	147347334	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	ORR1F|LTR|ERVL-MaLR	170968.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81420331-2	chr10	81419831	81420831	+	685.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008688, exon 2 of 10)	exon (NM_008688, exon 2 of 10)	-4034.0	NR_106141	102465778.0		NR_106141	ENSMUSG00000105379	Mir1191b	mmu-mir-1191b	microRNA 1191b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-88708748-2	chr9	88708248	88709248	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359992, intron 2 of 2)	PB1D10|SINE|Alu	10839.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-78883702-2	chr7	78883202	78884202	+	685.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4575.0	NR_029826	723884.0		NR_029826	ENSMUSG00000065609	Mir7-2	Mir7a2|Mirn7-2|mir-7a-2|mir-7a2|mmu-mir-7-2|mmu-mir-7a2	microRNA 7-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86886543-2	chr12	86886043	86887043	+	685.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MamRep488|DNA|hAT-Tip100	-1729.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117151929-2	chr10	117151429	117152429	+	685.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3455.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-68060445-2	chr15	68059948	68060948	+	685.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	198408.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-89765925-2	chr13	89765425	89766425	+	685.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23413.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	0.0	0.0	0.0	0.0	1.0	0.5
Merged-chr2-94400640-2	chr2	94400140	94401140	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183106, intron 1 of 24)	MT2B2|LTR|ERVL	6049.0	NM_183106	74569.0	Mm.248504	NM_183106	ENSMUSG00000027194	Ttc17	9130020K17Rik|D2Bwg1005e	tetratricopeptide repeat domain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93082316-2	chr1	93081816	93082816	+	685.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001110315, exon 2 of 47)	exon (NM_001110315, exon 2 of 47)	164.0	NM_001294150	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67803716-2	chr7	67803216	67804216	+	685.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045954)	promoter-TSS (NR_045954)	-220.0	NR_045954	73904.0	Mm.70992	NR_045954	ENSMUSG00000097697	4833412C05Rik	Bigheart	RIKEN cDNA 4833412C05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-100672208-2	chr6	100671708	100672708	+	685.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1051.0	NM_181590	72171.0	Mm.256022	NM_181590	ENSMUSG00000035378	Shq1	2810403P18Rik|Grim-1	SHQ1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-84754377-2	chr6	84753877	84754877	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 19 of 21)	intron (NM_177077, intron 19 of 21)	-160469.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117080165-2	chr10	117079665	117080665	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177798, intron 6 of 9)	ORR1F|LTR|ERVL-MaLR	-16313.0	NM_007636	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119489465-2	chr11	119488965	119489965	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153849, intron 1 of 3)	intron (NR_153849, intron 1 of 3)	1770.0	NR_153849	78439.0	Mm.440446	NR_153849	ENSMUSG00000109408	A930037H05Rik	Gm44935	RIKEN cDNA A930037H05 gene	ncRNA	3.0	1.5	0.0	0.0	3.0	1.0
Merged-chr9-57428768-2	chr9	57428268	57429268	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152145, intron 3 of 6)	intron (NR_152145, intron 3 of 6)	10968.0	NM_001357913	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17148260-2	chr16	17147760	17148760	+	685.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026940, exon 5 of 5)	exon (NM_026940, exon 5 of 5)	-1031.0	NM_001306169	76872.0	Mm.101656	NM_029779	ENSMUSG00000022768	Ccdc116	4930432J16Rik	coiled-coil domain containing 116	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-17052781-2	chr4	17052281	17053281	+	685.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-800112.0	NR_135158	17389.0	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT-MMP 3|MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-43386121-2	chr11	43385621	43386621	+	685.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11660.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43037939-2	chr17	43037439	43038439	+	685.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_178589, exon 2 of 6)	exon (NM_178589, exon 2 of 6)	21384.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	3.0	7.0	4.5	5.0	9.0	1.0
Merged-chr1-170901052-2	chr1	170900552	170901552	+	685.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	11889.0	NM_001029984	435653.0	Mm.337931	NM_001029984	ENSMUSG00000070524	Fcrlb	FREB-2|FREB2|FcRL2|Fcrlm2|Fcry|mFCRL2	Fc receptor-like B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64235080-2	chr15	64234580	64235580	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	77593.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122579133-2	chr8	122578633	122579633	+	685.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_016722, exon 14 of 14)	exon (NM_016722, exon 14 of 14)	-2226.0	NM_009698	11821.0	Mm.1786	NM_009698	ENSMUSG00000006589	Aprt	C85684	adenine phosphoribosyl transferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91137519-2	chr2	91137019	91138019	+	685.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001177720, exon 35 of 35)	3' UTR (NM_001177720, exon 35 of 35)	19375.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102257748-3	chr15	102257281	102258281	+	685.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011244)	promoter-TSS (NM_011244)	-259.0	NM_011244	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46001018-2	chr4	46000518	46001518	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355189, intron 6 of 16)	intron (NM_001355189, intron 6 of 16)	28187.0	NM_001355189	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64052950-2	chr15	64052450	64053450	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	6814.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-31612735-1	chr11	31612235	31613235	+	685.5	f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	59127.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	2.0	28.0	4.0	1.5	0.0	3.5
Merged-chr8-104641062-2	chr8	104640562	104641562	+	685.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026753, exon 3 of 5)	exon (NM_026753, exon 3 of 5)	666.0	NM_026753	68523.0	Mm.279	NM_026753	ENSMUSG00000031879	Fam96b	1110019N10Rik	family with sequence similarity 96, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-78883287-2	chr8	78882787	78883787	+	685.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62135.0	NM_030145	78651.0	Mm.28694	NM_030145	ENSMUSG00000031683	Lsm6	1500031N17Rik|2410088K19Rik|AI747288	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88130697-2	chr7	88130197	88131197	+	685.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001143834, exon 11 of 11)	exon (NM_001143834, exon 11 of 11)	-147388.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28771124-2	chr17	28770624	28771624	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011950, intron 2 of 11)	intron (NM_011950, intron 2 of 11)	1807.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-19701051-2	chr13	19700551	19701551	+	685.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3291.0	NM_181591	73412.0	Mm.279939	NM_181591	ENSMUSG00000041138	Nme8	1700056P15Rik|Sptrx-2|Txndc3	NME/NM23 family member 8	protein-coding	0.0	2.0	3.0	0.0	2.0	1.5
Merged-chr14-70518971-2	chr14	70518471	70519471	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033241, intron 1 of 19)	(CA)n|Simple_repeat|Simple_repeat	1289.0	NM_009755	12153.0	Mm.27757	NM_009755	ENSMUSG00000022098	Bmp1	Pcp|Tld	bone morphogenetic protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-22003002-2	chr10	22002502	22003502	+	685.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8336.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57559540-3	chr16	57559072	57560072	+	685.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	MIRb|SINE|MIR	10330.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62040385-3	chr9	62039900	62040900	+	685.416687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13610.0	NM_028748	74090.0	Mm.273267	NM_028748	ENSMUSG00000032278	Paqr5	0610010I15Rik|AV002411|BB115488|mPRg	progestin and adipoQ receptor family member V	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87090140-3	chr3	87089646	87090646	+	685.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170985, intron 6 of 15)	intron (NM_001170985, intron 6 of 15)	84601.0	NM_001170985	170643.0	Mm.89552	NM_130867	ENSMUSG00000041734	Kirrel	6720469N11Rik|Kirrel1|Neph1	kirre like nephrin family adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94716975-4	chr11	94716428	94717428	+	685.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger1|DNA|TcMar-Tigger	-12429.0	NM_001007584	432589.0	Mm.342314	NM_001007584	ENSMUSG00000056008	Gm11541	-	predicted gene 11541	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4657720-3	chr7	4657252	4658252	+	685.366699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172894, intron 1 of 23)	L2c|LINE|L2	1198.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95251420-2	chr11	95250920	95251920	+	685.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10109.0	NM_053093	93670.0	Mm.40085	NM_053093	ENSMUSG00000020872	Tac4	AW489379|PPT-C	tachykinin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-69518447-1	chr9	69517947	69518947	+	685.333313	f0_balb.idr	Intergenic	Intergenic	61503.0	NR_037296	100526560.0		NR_037296	ENSMUSG00000093042	Mir3109	mir-3109|mmu-mir-3109	microRNA 3109	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-80823352-3	chr1	80822833	80823833	+	685.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64780.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-103861155-1	chr7	103860655	103861655	+	685.333313	f0_balb.idr	Intergenic	Intergenic	-7948.0	NM_008221	15135.0	Mm.440164	NM_008221	ENSMUSG00000052187	Hbb-y	Ey|Hby	hemoglobin Y, beta-like embryonic chain	protein-coding	7.0	4.0	2.0	1.0	2.0	4.0
Merged-chr4-74231435-3	chr4	74230934	74231934	+	685.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11063.0	NM_001172095	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88469110-3	chr15	88468682	88469682	+	685.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-131120.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	11.5	2.0	0.0	0.0	3.0	2.0
Merged-chr15-80030018-3	chr15	80029527	80030527	+	685.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-15219.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	35.5	104.5	70.0	52.0	101.0	55.0
Merged-chr3-107331239-2	chr3	107330739	107331739	+	685.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001045807, exon 1 of 2)	exon (NM_001045807, exon 1 of 2)	2050.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132921413-2	chr4	132920878	132921878	+	685.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_145553, intron 1 of 8)	MT2B|LTR|ERVL	1173.0	NM_145553	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	7.5	11.0	2.5	6.0	12.0	5.0
Merged-chr2-29634250-2	chr2	29633750	29634750	+	685.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	14530.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167419990-2	chr2	167419490	167420490	+	685.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1720.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-65106113-3	chr15	65105629	65106629	+	685.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-183833.0	NM_009623	11514.0	Mm.1425	NM_009623	ENSMUSG00000022376	Adcy8	AC8|AW060868	adenylate cyclase 8	protein-coding	0.5	1.0	0.5	0.0	0.0	1.5
Merged-chr5-31191331-2	chr5	31190831	31191831	+	685.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127356, intron 4 of 11)	intron (NM_001127356, intron 4 of 11)	1808.0	NM_001127355	13667.0	Mm.29394	NM_010122	ENSMUSG00000029145	Eif2b4	Eif2b	eukaryotic translation initiation factor 2B, subunit 4 delta	protein-coding	0.0	0.0	1.5	0.0	0.0	1.5
Merged-chr2-32708832-3	chr2	32708331	32709331	+	685.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130860, intron 6 of 6)	ORR1F|LTR|ERVL-MaLR	3953.0	NM_130860	107951.0	Mm.27557	NM_130860	ENSMUSG00000009555	Cdk9	PITALRE	cyclin-dependent kinase 9 (CDC2-related kinase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86964211-1	chr17	86963711	86964711	+	685.166687	f0_balb.idr	intron (NM_145491, intron 1 of 4)	intron (NM_145491, intron 1 of 4)	1100.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	18.0	11.0	16.5	4.5	9.0	11.0
Merged-chr15-66932533-3	chr15	66932038	66933038	+	685.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008681, intron 15 of 15)	intron (NM_008681, intron 15 of 15)	37103.0	NM_008681	17988.0	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	0.0	3.5	0.5	1.0	0.0	0.0
Merged-chr17-48818054-3	chr17	48817529	48818529	+	685.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16B2|LTR|ERVL	-114553.0	NM_027452	70530.0	Mm.133607	NM_027452	ENSMUSG00000040490	Lrfn2	5730420O05Rik|SALM1|mKIAA1246	leucine rich repeat and fibronectin type III domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65326846-4	chr5	65326331	65327331	+	685.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011258, intron 1 of 24)	intron (NM_011258, intron 1 of 24)	8808.0	NM_011258	19687.0	Mm.148877	NM_011258	ENSMUSG00000029191	Rfc1	140kDa|Alp145|RFC140|Recc1	replication factor C (activator 1) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-31038011-2	chr7	31037511	31038511	+	685.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001287217, intron 4 of 8)	intron (NM_001287217, intron 4 of 8)	2306.0	NR_106017	102465635.0		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	0.0	3.0	1.5	1.0	0.0	0.0
Merged-chr16-4557460-2	chr16	4556960	4557960	+	685.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_031182, intron 1 of 6)	intron (NM_031182, intron 1 of 6)	2260.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-78713260-3	chr1	78712766	78713766	+	685.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	54826.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	1.5	0.0	3.0	1.5	0.0	3.0
Merged-chr2-131492816-3	chr2	131492332	131493332	+	685.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177840, intron 1 of 3)	intron (NM_001177840, intron 1 of 3)	970.0	NM_001177838	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8979203-3	chr4	8978755	8979755	+	685.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	227931.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	7.0	10.5	17.0	0.0	2.5	2.0
Merged-chr18-75917925-3	chr18	75917429	75918429	+	685.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145356, intron 2 of 4)	intron (NM_145356, intron 2 of 4)	97751.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	2.0	5.0	2.0	9.0	0.0	2.0
Merged-chr10-44481618-3	chr10	44481109	44482109	+	685.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22861.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111149713-3	chr12	111149214	111150214	+	685.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16656.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-89741469-2	chr13	89741013	89742013	+	685.041626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081249, intron 1 of 14)	intron (NM_001081249, intron 1 of 14)	999.0	NM_001081249	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	2.5	0.0	0.0	0.0	1.0	0.0
Merged-chr2-5768290-5	chr2	5767714	5768714	+	685.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53452.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	11.0	40.0	34.0	40.5	46.0	43.0
Merged-chr18-83938351-4	chr18	83937855	83938855	+	685.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	148207.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105325639-2	chr8	105325139	105326139	+	685.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025486)	promoter-TSS (NM_025486)	637.0	NM_177449	234684.0	Mm.381717	NM_177449	ENSMUSG00000041679	Lrrc29	A630024J02Rik|FBL9|FBXL9	leucine rich repeat containing 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73724017-2	chr15	73723517	73724517	+	685.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166388)	promoter-TSS (NM_001166388)	-780.0	NM_001357591	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96698165-1	chr15	96697665	96698665	+	685.0	f0_c57.idr	intron (NM_175121, intron 3 of 15)	intron (NM_175121, intron 3 of 15)	1563.0	NM_001355633	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71370058-2	chr8	71369644	71370644	+	685.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001145780)	TTS (NM_001145780)	-1154.0	NM_029865	77090.0	Mm.440170	NM_029865	ENSMUSG00000002396	Ocel1	9430098E02Rik|AI326022|AI593544	occludin/ELL domain containing 1	protein-coding	0.0	8.5	10.5	5.5	8.5	11.0
Merged-chr4-149733641-1	chr4	149733141	149734141	+	685.0	f1_balb.idr	intron (NM_001284270, intron 1 of 10)	intron (NM_001284270, intron 1 of 10)	4129.0	NM_001284273	230917.0	Mm.266704	NM_177672	ENSMUSG00000044700	Tmem201	AV028368|D4Ertd429e|Net5|Samp1	transmembrane protein 201	protein-coding	0.0	0.0	2.5	0.0	3.0	1.0
Merged-chr11-114910524-2	chr11	114910024	114911024	+	685.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	20483.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77719032-2	chr9	77718479	77719479	+	685.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-35556.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	6.5	9.0	16.0	2.5	7.5	18.5
Merged-chr14-87213278-1	chr14	87212778	87213778	+	685.0	f0_balb.idr	Intergenic	Intergenic	-72054.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	18.5	8.5	9.5	6.5	4.0	5.0
Merged-chr3-87528226-2	chr3	87527754	87528754	+	685.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359750, intron 3 of 4)	intron (NM_001359750, intron 3 of 4)	2676.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	1.0	0.5	3.5	3.5	28.5	1.5
Merged-chr4-126556493-2	chr4	126555993	126556993	+	685.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175554)	promoter-TSS (NM_175554)	-487.0	NM_175554	269582.0	Mm.243962	NM_175554	ENSMUSG00000042489	Clspn	B130025E01|C85083|E130314M08Rik	claspin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30678219-2	chr2	30677719	30678719	+	685.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_136917)	promoter-TSS (NR_136917)	-208.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-40446014-1	chr6	40445514	40446514	+	685.0	f0_balb.idr	intron (NM_201370, intron 2 of 11)	L2c|LINE|L2	3151.0	NM_201370	381759.0	Mm.20593	NM_201370	ENSMUSG00000037159	Wee2	Gm1065|Wee1B	WEE1 homolog 2 (S. pombe)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105719687-2	chr3	105719187	105720187	+	685.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175398, exon 2 of 2)	3' UTR (NM_175398, exon 2 of 2)	14229.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	0.5	6.5	0.0	2.0	9.5	2.0
Merged-chr3-109360959-1	chr3	109360459	109361459	+	685.0	f0_balb.idr	intron (NM_020505, intron 1 of 26)	intron (NM_020505, intron 1 of 26)	20276.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56430692-2	chr18	56430192	56431192	+	685.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360917, intron 1 of 13)	intron (NM_001360917, intron 1 of 13)	-1440.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10967643-2	chr19	10967143	10968143	+	685.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023529, intron 3 of 8)	intron (NM_023529, intron 3 of 8)	7027.0	NM_023529	69826.0	Mm.273404	NM_023529	ENSMUSG00000024731	Ms4a10	2010001N17Rik	membrane-spanning 4-domains, subfamily A, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7849755-1	chr10	7849255	7850255	+	685.0	f1_c57bl6.idr	intron (NM_172785, intron 2 of 5)	intron (NM_172785, intron 2 of 5)	13374.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	30.0	50.5	39.0	21.0	50.5	49.0
Merged-chr2-52932921-2	chr2	52932421	52933421	+	685.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	L1M4|LINE|L1	75053.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67232609-3	chr7	67232079	67233079	+	685.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291191, exon 11 of 11)	3' UTR (NM_001291191, exon 11 of 11)	9963.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54795077-2	chr13	54794577	54795577	+	685.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028841, exon 5 of 8)	exon (NM_028841, exon 5 of 8)	5672.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102570384-2	chr12	102569884	102570884	+	685.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172584, exon 10 of 10)	exon (NM_172584, exon 10 of 10)	15443.0	NM_007693	12652.0	Mm.4137	NM_007693	ENSMUSG00000021194	Chga	ChrA|cgA	chromogranin A	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr6-122834553-4	chr6	122834018	122835018	+	685.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021899, intron 6 of 10)	ID4|SINE|ID	3141.0	NR_106090	102465710.0		NR_106090	ENSMUSG00000106580	Mir7231	mmu-mir-7231	microRNA 7231	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50907146-1	chr9	50906646	50907646	+	685.0	f0_balb.idr	intron (NM_178710, intron 9 of 15)	intron (NM_178710, intron 9 of 15)	50222.0	NM_001286553	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108214328-2	chr6	108213828	108214828	+	685.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 2 of 61)	intron (NM_010585, intron 2 of 61)	1232.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	2.5	8.5	11.5	0.0	7.5	6.5
Merged-chr13-95534406-1	chr13	95533906	95534906	+	685.0	f1_balb.idr	Intergenic	Intergenic	-9166.0	NM_007974	14063.0	Mm.1614	NM_007974	ENSMUSG00000021678	F2rl1	Gpcr11|PAR-2|Par2	coagulation factor II (thrombin) receptor-like 1	protein-coding	3.5	10.0	4.0	0.0	0.0	2.0
Merged-chr13-85505476-2	chr13	85504976	85505976	+	685.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-215990.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	17.5	4.0	15.5	0.5	14.5	17.0
Merged-chr18-84199397-1	chr18	84198897	84199897	+	685.0	f0_balb.idr	Intergenic	Intergenic	111239.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-73748571-1	chr6	73748071	73749071	+	685.0	f0_balb.idr	Intergenic	Intergenic	-277550.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	14.5	16.0	1.0	2.0	0.0	9.5
Merged-chr9-22163358-2	chr9	22162858	22163858	+	685.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	6512.0	NM_001082532	66268.0	Mm.28924	NM_025457	ENSMUSG00000010607	Pigyl	1810008A14Rik|PIG-Y|Pigy	phosphatidylinositol glycan anchor biosynthesis, class Y-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84530283-2	chr2	84529783	84530783	+	685.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-23410.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-25528167-2	chr5	25527667	25528667	+	685.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1851.0	NR_027388	73571.0	Mm.105263	NR_027388	ENSMUSG00000101856	1700096K18Rik	-	RIKEN cDNA 1700096K18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-75809350-1	chr5	75808850	75809850	+	685.0	f1_c57bl6.idr	Intergenic	Intergenic	169078.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	0.0	1.5	7.0	0.0	0.5	0.0
Merged-chr2-167782564-2	chr2	167782064	167783064	+	685.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91387.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65206012-2	chr9	65205512	65206512	+	685.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-8678.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-69389608-2	chr13	69389105	69390105	+	685.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	144259.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	10.0	9.0	4.0	0.0	0.0	4.0
Merged-chr4-138367909-1	chr4	138367409	138368409	+	685.0	f1_c57bl6.idr	promoter-TSS (NM_028176)	promoter-TSS (NM_028176)	46.0	NM_028176	72269.0	Mm.46182	NM_028176	ENSMUSG00000028755	Cda	2210401N16Rik	cytidine deaminase	protein-coding	4.0	0.0	2.5	4.0	0.0	2.5
Merged-chr13-9139771-2	chr13	9139271	9140271	+	685.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 5 of 17)	intron (NM_172585, intron 5 of 17)	45890.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-60518634-1	chr3	60518134	60519134	+	685.0	f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	17455.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	2.0	23.0	26.0	10.0	11.5	24.5
Merged-chr2-167919444-2	chr2	167918944	167919944	+	685.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12883.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-71939175-2	chr16	71938690	71939690	+	685.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	295137.0	NR_131116	319533.0	Mm.373754	NR_131115		8030451O07Rik	-	RIKEN cDNA 8030451O07 gene	ncRNA	0.0	0.0	0.0	1.5	3.0	0.0
Merged-chr7-45435953-2	chr7	45435453	45436453	+	685.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030678, intron 1 of 15)	intron (NM_030678, intron 1 of 15)	1114.0	NM_030678	14936.0	Mm.275654	NM_030678	ENSMUSG00000003865	Gys1	Gys3|MGS	glycogen synthase 1, muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-77237094-2	chr2	77236594	77237594	+	685.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175465, intron 3 of 17)	intron (NM_175465, intron 3 of 17)	43498.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72398660-2	chr6	72398160	72399160	+	685.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-7993.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14894743-2	chr8	14894267	14895267	+	685.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_012000, exon 2 of 3)	exon (NM_012000, exon 2 of 3)	6231.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	2.5	1.0	2.0	2.0	0.0	3.0
Merged-chr3-87173124-1	chr3	87172624	87173624	+	685.0	f1_balb.idr	intron (NM_001170985, intron 1 of 15)	intron (NM_001170985, intron 1 of 15)	1623.0	NM_001170985	170643.0	Mm.89552	NM_130867	ENSMUSG00000041734	Kirrel	6720469N11Rik|Kirrel1|Neph1	kirre like nephrin family adhesion molecule 1	protein-coding	0.0	2.0	0.0	0.0	0.0	0.0
Merged-chr3-88106154-2	chr3	88105654	88106654	+	685.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033484, intron 22 of 37)	MTD|LTR|ERVL-MaLR	24103.0	NM_001033484	404710.0	Mm.331133	NM_001033484	ENSMUSG00000028068	Iqgap3	AI593484|D030034H08	IQ motif containing GTPase activating protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-33251023-2	chr15	33250523	33251523	+	685.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176073, intron 3 of 7)	intron (NM_176073, intron 3 of 7)	154916.0	NR_033608	73486.0	Mm.483393	NM_028551	ENSMUSG00000058101	1700084J12Rik	-	ribosomal protein L7-like 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129702208-2	chr4	129701694	129702694	+	685.0	f0_c57.idr|f1_c57bl6.idr	TTS (NR_045036)	TTS (NR_045036)	-5349.0	NM_001356378	230770.0	Mm.257157	NM_199305	ENSMUSG00000053730	Tmem39b	6330509E05Rik|BC037095	transmembrane protein 39b	protein-coding	43.0	77.5	37.0	33.0	67.0	42.5
Merged-chr19-6967830-2	chr19	6967330	6968330	+	685.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290349, intron 1 of 30)	intron (NM_001290349, intron 1 of 30)	1984.0	NM_008874	18797.0	Mm.273204	NM_008874	ENSMUSG00000024960	Plcb3	mKIAA4098	phospholipase C, beta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87482827-2	chr6	87482324	87483324	+	685.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 4 of 10)	intron (NM_001037727, intron 4 of 10)	13503.0	NR_104483	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	6.5	3.5	4.0	3.0	14.0	2.5
Merged-chr12-85711355-2	chr12	85710855	85711855	+	685.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24635.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97288961-3	chr11	97288487	97289487	+	685.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-8411.0	NM_008942	19155.0	Mm.29824	NM_008942	ENSMUSG00000001441	Npepps	AAP-S|MP100|Psa|R74825|goku	aminopeptidase puromycin sensitive	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115853203-2	chr5	115852703	115853703	+	685.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007708, intron 2 of 46)	ORR1F|LTR|ERVL-MaLR	7547.0	NM_007708	12704.0	Mm.8321	NM_007708	ENSMUSG00000029516	Cit	C030025P15Rik|CRIK|CRIK-SK|Cit-k	citron	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23516479-2	chr13	23515979	23516979	+	685.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-14565.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100462296-1	chr15	100461796	100462796	+	685.0	f1_balb.idr	Intergenic	Intergenic	-6715.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	41.0	73.5	44.5	16.5	39.0	16.5
Merged-chr11-78436158-3	chr11	78435648	78436648	+	684.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13914.0	NM_022411	20500.0	Mm.274058	NM_022411	ENSMUSG00000001095	Slc13a2	Nadc-1|Nadc1|mNaDC-1	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31772766-3	chr5	31772256	31773256	+	684.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 3 of 11)	L1ME1|LINE|L1	74706.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30424547-2	chr7	30424095	30425095	+	684.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_172142, intron 3 of 10)	B1F|SINE|Alu	1320.0	NM_172142	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	7.0	9.5	17.5	12.5	13.0	5.5
Merged-chr16-90401541-2	chr16	90401041	90402041	+	684.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_015755, intron 1 of 10)	intron (NM_015755, intron 1 of 10)	15144.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-41013343-2	chr14	41012843	41013843	+	684.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316735, intron 1 of 5)	intron (NM_001316735, intron 1 of 5)	490.0	NM_001316734	70564.0	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61057850-2	chr9	61057350	61058350	+	684.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40781.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-56304273-3	chr8	56303752	56304752	+	684.8222049999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008278, intron 3 of 6)	L1_Rod|LINE|L1	9700.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139794421-2	chr5	139793921	139794921	+	684.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010757, intron 1 of 2)	PB1D7|SINE|Alu	2885.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	3.5	1.5	0.0	1.5	0.0	0.0
Merged-chr11-115132936-2	chr11	115132436	115133436	+	684.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001169153, intron 1 of 6)	intron (NM_001169153, intron 1 of 6)	1056.0	NM_001347648	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57705165-5	chr15	57704572	57705572	+	684.7363280000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 1 of 3)	intron (NM_199449, intron 1 of 3)	10405.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95894992-3	chr10	95894510	95895510	+	684.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45653.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146583687-3	chr3	146583179	146584179	+	684.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019957, intron 6 of 6)	intron (NM_019957, intron 6 of 6)	-13470.0	NM_009474	22262.0	Mm.10865	NM_009474	ENSMUSG00000028186	Uox	AI663847	urate oxidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95966034-2	chr3	95965534	95966534	+	684.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19476.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	0.0	0.0	1.5	0.0	2.5	5.0
Merged-chr3-101616015-3	chr3	101615503	101616503	+	684.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11296.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	4.0	20.5	14.0	6.5	4.0	7.5
Merged-chr16-81434469-3	chr16	81433994	81434994	+	684.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113208, intron 2 of 17)	intron (NM_001113208, intron 2 of 17)	233797.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5570917-2	chr19	5570417	5571417	+	684.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033448, exon 2 of 2)	exon (NM_001033448, exon 2 of 2)	2893.0	NM_001033448	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99833350-2	chr15	99832850	99833850	+	684.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113545, intron 2 of 10)	intron (NM_001113545, intron 2 of 10)	-13201.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-37328913-2	chr15	37328413	37329413	+	684.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026496, intron 9 of 15)	intron (NM_026496, intron 9 of 15)	-95754.0	NR_155442	105245924.0	Mm.391911	NR_155441	ENSMUSG00000089804	Gm16136	-	predicted gene 16136	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105141313-2	chr5	105140813	105141813	+	684.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1727.0	NM_001359080	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.0	4.5	10.0	0.0	9.5	0.5
Merged-chr17-80559010-2	chr17	80558510	80559510	+	684.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360144, intron 2 of 9)	intron (NM_001360144, intron 2 of 9)	4824.0	NM_001033443	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-137080676-3	chr2	137080178	137081178	+	684.5888669999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013822)	TTS (NM_013822)	35842.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-111140897-2	chr5	111140397	111141397	+	684.583313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 5 of 22)	B1_Mus2|SINE|Alu	136753.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	25.5	30.5	32.5	46.5	39.0	27.5
Merged-chr12-69185493-3	chr12	69184995	69185995	+	684.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_146035, exon 1 of 1)	exon (NM_146035, exon 1 of 1)	1337.0	NM_146035	217664.0	Mm.206642	NM_146035	ENSMUSG00000043998	Mgat2	AA407964|CDGS2|GLCNACTII|GNT-II|GNT2	mannoside acetylglucosaminyltransferase 2	protein-coding	21.0	19.0	45.0	6.5	6.5	17.5
Merged-chr3-97226620-2	chr3	97226120	97227120	+	684.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029933, intron 1 of 9)	intron (NM_029933, intron 1 of 9)	744.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99056462-2	chr15	99055962	99056962	+	684.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163589, intron 3 of 8)	intron (NM_001163589, intron 3 of 8)	1288.0	NM_001163589	19132.0	Mm.2477	NM_013639	ENSMUSG00000023484	Prph	Prph1	peripherin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51818846-2	chr11	51818346	51819346	+	684.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357588, intron 11 of 12)	intron (NM_001357588, intron 11 of 12)	38635.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-62851126-2	chr16	62850626	62851626	+	684.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	-3181.0	NM_011173	19128.0	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-118437925-2	chr4	118437427	118438427	+	684.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023223)	promoter-TSS (NM_023223)	-584.0	NM_023223	107995.0	Mm.261764	NM_023223	ENSMUSG00000006398	Cdc20	2310042N09Rik|C87100|p55CDC	cell division cycle 20	protein-coding	4.0	4.5	7.5	0.0	16.0	8.5
Merged-chr9-62909399-2	chr9	62908899	62909899	+	684.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 7 of 13)	intron (NM_019663, intron 7 of 13)	-47375.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72896862-2	chr5	72896362	72897362	+	684.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17500.0	NM_001113423	75991.0	Mm.121285	NM_153567	ENSMUSG00000036087	Slain2	5033405K12Rik|8030444K12Rik|AI596370	SLAIN motif family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131198030-2	chr1	131197530	131198530	+	684.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018750, intron 2 of 5)	B2_Mm2|SINE|B2	2155.0	NM_001311094	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128732845-2	chr4	128732345	128733345	+	684.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195083, intron 1 of 6)	B2_Mm2|SINE|B2	5274.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	21.5	45.0	17.5	2.5	18.5	6.0
Merged-chr3-95124351-2	chr3	95123851	95124851	+	684.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016712)	promoter-TSS (NM_016712)	-163.0	NM_016712	50874.0	Mm.71935	NM_016712	ENSMUSG00000005628	Tmod4	MTMOD|Sk-Tmod	tropomodulin 4	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr8-13455357-2	chr8	13454857	13455857	+	684.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001143672, intron 5 of 7)	intron (NM_001143672, intron 5 of 7)	19898.0	NM_001143672	272465.0	Mm.250502	NM_001143671	ENSMUSG00000038457	Tmem255b	Fam70b|Gm687	transmembrane protein 255B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75483263-2	chr10	75482763	75483763	+	684.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33753.0	NR_045841	71125.0	Mm.399516	NR_045841		4933407G14Rik	-	RIKEN cDNA 4933407G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171932703-2	chr1	171932205	171933205	+	684.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347186, intron 1 of 8)	intron (NM_001347186, intron 1 of 8)	-13349.0	NR_151536	105244010.0	Mm.417758	NR_151535		Gm37065	-	predicted gene, 37065	ncRNA	2.5	0.0	0.5	1.5	4.5	2.0
Merged-chr2-27556247-2	chr2	27555747	27556747	+	684.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41100.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-155631707-2	chr3	155631207	155632207	+	684.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-344647.0	NR_040553	329780.0	Mm.119000	NR_040553	ENSMUSG00000104553	9330178D15Rik	9330178D15	RIKEN cDNA 9330178D15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170185320-2	chr2	170184820	170185820	+	684.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42645.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144529067-2	chr2	144528567	144529567	+	684.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029763, intron 2 of 8)	MLT2B1|LTR|ERVL	1322.0	NM_029763	70408.0	Mm.389351	NM_029763	ENSMUSG00000027427	Polr3f	2810411G20Rik|3010019O03Rik|3110032A07Rik|RPC39|RPC6	polymerase (RNA) III (DNA directed) polypeptide F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-88429009-2	chr12	88428509	88429509	+	684.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361601, intron 3 of 8)	intron (NM_001361601, intron 3 of 8)	-51686.0	NR_045888	71818.0	Mm.490789	NR_045888	ENSMUSG00000113434	3200001D21Rik	-	RIKEN cDNA 3200001D21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31950699-2	chr16	31950199	31951199	+	684.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026554, intron 1 of 3)	intron (NM_026554, intron 1 of 3)	2153.0	NM_026554	68092.0	Mm.290027	NM_026554	ENSMUSG00000022774	Ncbp2	20kDa|5930413E18Rik|AA536802|AI843301|C79367	nuclear cap binding protein subunit 2	protein-coding	2.5	5.0	0.0	1.0	0.0	0.0
Merged-chr13-44638435-2	chr13	44637843	44638843	+	684.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-92431.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	6.5	3.5	8.5	1.5	1.0	2.5
Merged-chr6-113649188-2	chr6	113648688	113649688	+	684.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	10721.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-54669272-2	chr4	54668771	54669771	+	684.5	f0_balb.idr|f1_balb.idr	Intergenic	L2c|LINE|L2	-278674.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	7.0	8.0	4.0	0.0	8.5	12.0
Merged-chr5-53214066-2	chr5	53213566	53214566	+	684.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172710)	promoter-TSS (NM_172710)	-614.0	NM_172710	231238.0	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74371050-2	chr1	74370550	74371550	+	684.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-4153.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74378029-2	chr1	74377529	74378529	+	684.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013612, intron 4 of 14)	intron (NM_013612, intron 4 of 14)	2826.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126756437-2	chr8	126755937	126756937	+	684.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-92583.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	4.0	12.0	5.5	15.5	6.5
Merged-chr3-132684899-2	chr3	132684399	132685399	+	684.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163455, intron 1 of 25)	intron (NM_001163455, intron 1 of 25)	755.0	NM_001163455	271981.0	Mm.257864	NM_173032	ENSMUSG00000028030	Tbck	1700120J03Rik|9430001M19|A630047E20Rik|C030007I09Rik|Tbckl	TBC1 domain containing kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128461317-2	chr10	128460817	128461817	+	684.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114097, intron 1 of 27)	intron (NM_001114097, intron 1 of 27)	2081.0	NM_001114097	68094.0	Mm.417338	NM_198160	ENSMUSG00000025369	Smarcc2	5930405J04Rik	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66069238-4	chr5	66068759	66069759	+	684.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	28920.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	3.5	15.5	2.0	3.5	17.5	2.0
Merged-chr7-90014896-2	chr7	90014396	90015396	+	684.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14263.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	2.0	1.0	3.0	0.5	1.5	3.0
Merged-chr7-119744505-2	chr7	119744005	119745005	+	684.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-16418.0	NM_212441	20216.0	Mm.334199	NM_016870	ENSMUSG00000030935	Acsm3	Sa|Sah	acyl-CoA synthetase medium-chain family member 3	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr4-28560281-2	chr4	28559781	28560781	+	684.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-252850.0	NM_001290434	13841.0	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-63860172-2	chr18	63859672	63860672	+	684.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001014981, intron 20 of 27)	intron (NM_001014981, intron 20 of 27)	151477.0	NM_001014981	104082.0	Mm.30850	NM_001014981	ENSMUSG00000040560	Wdr7	AI462727|TRAG|mKIAA0541	WD repeat domain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-63601664-4	chr15	63601134	63602134	+	684.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122026.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5783758-2	chr17	5783258	5784258	+	684.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14899.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-30046138-3	chr18	30045676	30046676	+	684.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-226689.0	NM_181414	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94190346-1	chr10	94189846	94190846	+	684.5	f0_balb.idr	intron (NM_011629, intron 11 of 13)	(TTTTTG)n|Simple_repeat|Simple_repeat	-8663.0	NM_025551	66414.0	Mm.27886	NM_025551	ENSMUSG00000020022	Ndufa12	2410011G03Rik|AW112974	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12	protein-coding	2.5	10.0	7.0	14.0	13.0	16.5
Merged-chr13-60731790-2	chr13	60731290	60732290	+	684.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 17 of 26)	intron (NM_134062, intron 17 of 26)	54574.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	1.0	9.5	0.5	4.5	2.0	1.5
Merged-chr14-103844519-3	chr14	103844035	103845035	+	684.377747	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007904)	promoter-TSS (NM_007904)	-59.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99927649-2	chr7	99927149	99928149	+	684.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_175388, intron 4 of 5)	intron (NM_175388, intron 4 of 5)	52809.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49058699-4	chr13	49058199	49059199	+	684.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290313, intron 21 of 29)	intron (NM_001290313, intron 21 of 29)	89629.0	NM_029361	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165189027-4	chr1	165188574	165189574	+	684.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151711, intron 1 of 6)	intron (NR_151711, intron 1 of 6)	5359.0	NM_145512	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23853079-2	chr11	23852579	23853579	+	684.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	42191.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59523001-2	chr15	59522501	59523501	+	684.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-125653.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	2.5	0.0	0.0	3.5	0.0
Merged-chr9-57624693-2	chr9	57624193	57625193	+	684.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3919.0	NM_199222	235416.0	Mm.295630	NM_199222	ENSMUSG00000056271	Lman1l	BC020188|slamp	lectin, mannose-binding 1 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58017590-2	chr15	58017090	58018090	+	684.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16704.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-89765668-2	chr16	89765168	89766168	+	684.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52684.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-162738606-3	chr1	162738112	162739112	+	684.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081290, intron 1 of 34)	MIRb|SINE|MIR	1944.0	NM_001081290	226562.0	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84405380-3	chr10	84404907	84405907	+	684.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 2 of 6)	intron (NM_001004363, intron 2 of 6)	35064.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-51585989-3	chr15	51585550	51586550	+	684.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-190440.0	NR_045092	100502643.0	Mm.131987	NR_045092	ENSMUSG00000115654	Gm19303	-	predicted gene, 19303	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-74000708-3	chr13	74000220	74001220	+	684.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-8699.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3729819-3	chr4	3729321	3730321	+	684.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	14857.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	16.0	69.0	45.5	29.0	48.5	42.0
Merged-chr1-123919173-2	chr1	123918673	123919673	+	684.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_199021, intron 1 of 25)	B4A|SINE|B4	126386.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	2.5	27.5	8.5	18.0	8.5	4.5
Merged-chr12-85482526-2	chr12	85482026	85483026	+	684.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8636.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75838445-2	chr14	75837945	75838945	+	684.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	6519.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51200677-2	chr3	51200177	51201177	+	684.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-23770.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122739625-3	chr6	122739142	122740142	+	684.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011401, intron 3 of 9)	intron (NM_011401, intron 3 of 9)	3103.0	NM_011401	20527.0	Mm.395108	NM_011401	ENSMUSG00000003153	Slc2a3	AA408729|AL023014|AL024341|AU040424|C78366|Glut-3|Glut3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122753932-3	chr2	122753437	122754437	+	684.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11422.0	NM_001162503	59010.0	Mm.28986	NM_021507	ENSMUSG00000005803	Sqor	0610039J17Rik|4930557M22Rik|Sqrdl	sulfide quinone oxidoreductase	protein-coding	0.0	5.0	5.5	0.5	6.0	2.0
Merged-chr2-154866909-2	chr2	154866409	154867409	+	684.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001139511, exon 8 of 8)	3' UTR (NM_001139511, exon 8 of 8)	25997.0	NM_026030	67204.0	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	0.0	2.0	0.0	0.0	1.0	0.5
Merged-chr10-81328545-2	chr10	81328045	81329045	+	684.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009325)	promoter-TSS (NM_009325)	-158.0	NM_009325	21390.0	Mm.4545	NM_009325	ENSMUSG00000034881	Tbxa2r	TP|TXA2-R	thromboxane A2 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75378778-2	chr18	75378278	75379278	+	684.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042660, intron 3 of 3)	intron (NM_001042660, intron 3 of 3)	11413.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-17886165-2	chr2	17885665	17886665	+	684.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	110793.0	NM_026627	68231.0	Mm.23887	NM_026627	ENSMUSG00000062651	H2al2a	1700113O17Rik|H2A.Bbd|H2A.L.2|H2afb1|H2al2|TSEG-1|Tseg1	H2A histone family member L2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-140619385-3	chr6	140618890	140619890	+	684.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3273.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23745939-2	chr17	23745449	23746449	+	684.083374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028416)	promoter-TSS (NM_028416)	-120.0	NM_028416	73016.0	Mm.221319	NM_028416	ENSMUSG00000040680	Kremen2	2900054E04Rik|Krm2	kringle containing transmembrane protein 2	protein-coding	0.0	0.0	0.0	2.0	0.0	0.5
Merged-chr9-40343949-3	chr9	40343444	40344444	+	684.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040728)	TTS (NR_040728)	2301.0	NM_001357623	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-25082733-3	chr5	25082218	25083218	+	684.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 1 of 15)	intron (NM_145401, intron 1 of 15)	17924.0	NM_145401	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78244088-3	chr15	78243572	78244572	+	684.027771	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_008677)	promoter-TSS (NM_008677)	-739.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	46.0	85.5	51.0	29.5	68.0	44.0
Merged-chr10-80903553-2	chr10	80903053	80904053	+	684.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010722, exon 10 of 12)	exon (NM_010722, exon 10 of 12)	-2584.0	NM_013895	30055.0	Mm.142132	NM_013895	ENSMUSG00000020219	Timm13	D10Ertd378e|Tim9|Timm9	translocase of inner mitochondrial membrane 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23286857-2	chr16	23286357	23287357	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-3613.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45402221-2	chr7	45401721	45402721	+	684.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3739.0	NM_010596	16495.0	Mm.12955	NM_010596	ENSMUSG00000038201	Kcna7	Kv1.7	potassium voltage-gated channel, shaker-related subfamily, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85272955-1	chr1	85272455	85273455	+	684.0	f1_balb.idr	Intergenic	Intergenic	-2389.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8561057-1	chr11	8560557	8561557	+	684.0	f0_c57.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	103478.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	4.5	13.0	5.5	1.0	19.5	3.0
Merged-chr17-17906926-2	chr17	17906426	17907426	+	684.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19102.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	2.5	0.0	3.0	0.0	0.0	0.0
Merged-chr6-99206220-3	chr6	99205747	99206747	+	684.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	60268.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96074492-2	chr11	96073992	96074992	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007506, intron 2 of 4)	intron (NM_007506, intron 2 of 4)	1139.0	NM_001161419	11951.0	Mm.258	NM_007506	ENSMUSG00000006057	Atp5g1	-	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9)	protein-coding	2.5	0.0	0.0	0.0	0.0	1.0
Merged-chr17-14570222-2	chr17	14569722	14570722	+	684.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	124040.0	NM_011581	21826.0	Mm.26688	NM_011581	ENSMUSG00000023885	Thbs2	TSP2|Thbs-2	thrombospondin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76434667-2	chr15	76434167	76435167	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162489, intron 26 of 30)	intron (NM_001162489, intron 26 of 30)	1453.0	NR_105919	102465576.0		NR_105919	ENSMUSG00000099260	Mir6954	Gm27770|mmu-mir-6954	microRNA 6954	ncRNA	1.5	4.0	3.5	0.0	2.0	1.0
Merged-chr7-19367518-2	chr7	19367018	19368018	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001010836, intron 1 of 12)	ID_B1|SINE|B4	6302.0	NM_001010836	333654.0	Mm.333640	NM_001010836	ENSMUSG00000040734	Ppp1r13l	AV260376|IASPP|Nkip1|wa3	protein phosphatase 1, regulatory (inhibitor) subunit 13 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42006890-1	chr19	42006390	42007390	+	684.0	f1_balb.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	25127.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	25.5	13.0	14.5	4.0	26.0	17.0
Merged-chr11-101140102-2	chr11	101139602	101140602	+	684.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15782.0	NM_134028	103768.0	Mm.142348	NM_134028	ENSMUSG00000045007	Tubg2	AI504772|Tubgl	tubulin, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24995752-2	chr5	24995252	24996252	+	684.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310480)	promoter-TSS (NM_001310480)	1.0	NM_001310480	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59179537-2	chr2	59179037	59180037	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	18687.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123523525-2	chr5	123523025	123524025	+	684.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106105)	promoter-TSS (NR_106105)	639.0	NM_023232	66593.0	Mm.46716	NM_023232	ENSMUSG00000029433	Diablo	0610041G12Rik|1700006L01Rik|AU040403|Smac	diablo, IAP-binding mitochondrial protein	protein-coding	6.5	46.5	26.5	17.0	16.5	30.0
Merged-chr8-94308079-2	chr8	94307579	94308579	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357268, intron 15 of 20)	intron (NM_001357268, intron 15 of 20)	-16232.0	NR_029552	723956.0		NR_029552	ENSMUSG00000065512	Mir138-2	Mirn138-2|mir-138-2	microRNA 138-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6349586-1	chr4	6349086	6350086	+	684.0	f1_c57bl6.idr	Intergenic	MER44B|DNA|TcMar-Tigger	-16094.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	2.0	0.0	0.5	0.0	0.0	0.0
Merged-chr2-158614680-2	chr2	158614180	158615180	+	684.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009508, exon 2 of 2)	exon (NM_009508, exon 2 of 2)	3922.0	NM_009508	22348.0	Mm.143404	NM_009508	ENSMUSG00000037771	Slc32a1	R75019|VGAT|Viaat	solute carrier family 32 (GABA vesicular transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86943793-1	chr4	86943293	86944293	+	684.0	f1_balb.idr	Intergenic	Intergenic	69379.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	5.0	2.5	5.0	6.0	11.0	7.0
Merged-chr11-94602743-1	chr11	94602243	94603243	+	684.0	f1_c57bl6.idr	promoter-TSS (NM_153807)	promoter-TSS (NM_153807)	-957.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	0.5	4.0	2.5	0.0	3.0	2.5
Merged-chr11-82783724-2	chr11	82783224	82784224	+	684.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001291247, exon 2 of 20)	exon (NM_001291247, exon 2 of 20)	2615.0	NM_010716	16882.0	Mm.277136	NM_010716	ENSMUSG00000020697	Lig3	D11Wsu78e	ligase III, DNA, ATP-dependent	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129791767-2	chr4	129791295	129792295	+	684.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1M|LTR|ERVL-MaLR	-28684.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	3.5	16.0	9.0	18.5	36.0	30.0
Merged-chr11-70320788-2	chr11	70320288	70321288	+	684.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145684, exon 6 of 14)	exon (NM_145684, exon 6 of 14)	1742.0	NM_145684	11685.0	Mm.274093	NM_145684	ENSMUSG00000018907	Alox12e	12-LOX|8-LOX|AW259591|Alox12-ps1|Alox12-ps2|Aloxe|e-LOX1	arachidonate lipoxygenase, epidermal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49100153-2	chr11	49099653	49100653	+	684.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	13136.0	NM_008330	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127412658-1	chr3	127412158	127413158	+	684.0	f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	B4A|SINE|B4	-3600.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	7.0	6.5	2.5	2.5	1.0	1.0
Merged-chr16-4906887-2	chr16	4906387	4907387	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 1 of 17)	MLT1C|LTR|ERVL-MaLR	20787.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87326267-2	chr17	87325767	87326767	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 8 of 19)	intron (NM_028639, intron 8 of 19)	43381.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19802514-2	chr7	19802014	19803014	+	684.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-5705.0	NM_023224	80794.0	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84755131-2	chr10	84754631	84755631	+	684.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024918)	promoter-TSS (NM_001024918)	-917.0	NM_001024918	71137.0	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113062461-3	chr6	113061953	113062953	+	684.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008188, intron 5 of 9)	intron (NM_008188, intron 5 of 9)	14791.0	NR_027010	14910.0	Mm.280950	NR_027008	ENSMUSG00000086429	Gt(ROSA)26Sor	AV258896|Gtrgeo26|Gtrosa26|R26|ROSA26|Thumpd3as1	gene trap ROSA 26, Philippe Soriano	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-38072357-1	chr5	38071857	38072857	+	684.0	f1_c57bl6.idr	intron (NM_001359398, intron 1 of 9)	intron (NM_001359398, intron 1 of 9)	33127.0	NM_026959	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	13.5	2.0	4.0	1.5	8.0	3.0
Merged-chr2-5705046-3	chr2	5704545	5705545	+	684.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	9717.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64619767-2	chr17	64619267	64620267	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	18118.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156069654-1	chr2	156069154	156070154	+	684.0	f1_balb.idr	TTS (NM_139151)	TTS (NM_139151)	4441.0	NM_139151	245865.0	Mm.330713	NM_139151	ENSMUSG00000038180	Spag4	1700041K21Rik|MNCb-0953|Sun4|mKIAA4118	sperm associated antigen 4	protein-coding	0.0	0.5	2.0	0.0	0.0	4.0
Merged-chr10-99585023-3	chr10	99584496	99585496	+	684.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24175.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128297177-1	chr10	128296677	128297677	+	684.0	f1_balb.idr	exon (NM_031252, exon 3 of 4)	exon (NM_031252, exon 3 of 4)	907.0	NM_031252	83430.0	Mm.125482	NM_031252	ENSMUSG00000025383	Il23a	IL-23|p19	interleukin 23, alpha subunit p19	protein-coding	5.0	8.0	0.5	0.0	0.0	0.5
Merged-chr2-67886728-2	chr2	67886228	67887228	+	684.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105685.0	NR_105752	102466627.0		NR_105752	ENSMUSG00000098734	Mir6335	Gm27836|mmu-mir-6335	microRNA 6335	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51677769-3	chr10	51677281	51678281	+	684.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159389)	promoter-TSS (NM_001159389)	21.0	NM_001159389	320995.0	Mm.109190	NM_177306	ENSMUSG00000019900	Rfx6	4930572O07Rik|Rfxdc1	regulatory factor X, 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17259585-1	chr12	17259085	17260085	+	684.0	f0_balb.idr	Intergenic	B4A|SINE|B4	-7010.0	NM_027959	71853.0	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	0.0	4.0	6.0	10.0	0.0	2.5
Merged-chr11-116090770-2	chr11	116090270	116091270	+	684.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3775.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5926854-2	chr19	5926354	5927354	+	684.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2038.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	0.5	3.5	1.0	0.5	3.5	1.0
Merged-chr2-154539924-2	chr2	154539424	154540424	+	684.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009823)	TTS (NM_009823)	-8980.0	NM_029305	75480.0	Mm.440434	NM_029305	ENSMUSG00000038523	1700003F12Rik	-	RIKEN cDNA 1700003F12 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29097149-2	chr17	29096661	29097661	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007669, intron 1 of 2)	intron (NM_007669, intron 1 of 2)	3392.0	NM_007669	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	0.0	0.0	4.0	0.0	0.0	0.0
Merged-chr9-116060112-2	chr9	116059612	116060612	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028638, intron 14 of 14)	intron (NM_028638, intron 14 of 14)	115251.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44844133-1	chr7	44843633	44844633	+	684.0	f1_c57bl6.idr	exon (NM_001042655, exon 9 of 17)	exon (NM_001042655, exon 9 of 17)	4946.0	NM_001042655	233204.0	Mm.27567	NM_144924	ENSMUSG00000038520	Tbc1d17	BC017607	TBC1 domain family, member 17	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr11-107013810-1	chr11	107013310	107014310	+	684.0	f1_balb.idr	Intergenic	B1_Mm|SINE|Alu	-14285.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	0.0	0.0	4.0	0.0	0.0	0.0
Merged-chr1-13363827-1	chr1	13363327	13364327	+	684.0	f0_balb.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	8602.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0.0	1.5	0.0	0.5	13.5	2.0
Merged-chr19-4194155-2	chr19	4193655	4194655	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031868, intron 4 of 6)	B1_Mur4|SINE|Alu	1981.0	NM_031868	19045.0	Mm.1970	NM_031868	ENSMUSG00000040385	Ppp1ca	Ppp1c|dism2	protein phosphatase 1, catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-30825238-2	chr10	30824738	30825738	+	684.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17545.0	NM_013904	15214.0	Mm.103573	NM_013904	ENSMUSG00000019789	Hey2	CHF1|Herp1|Hrt2|bHLHb32|hesr2	hairy/enhancer-of-split related with YRPW motif 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63106407-2	chr14	63105907	63106907	+	684.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16055.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67991692-2	chr15	67991192	67992192	+	684.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	267164.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69365791-2	chr11	69365291	69366291	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146019, intron 1 of 39)	intron (NM_146019, intron 1 of 39)	3635.0	NM_146019	216848.0	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	29.5	48.5	39.5	28.5	55.0	38.0
Merged-chr5-122060192-2	chr5	122059692	122060692	+	684.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-10341.0	NM_001312908	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	2.0	4.0	1.0	2.5	5.5	5.5
Merged-chr15-99154782-3	chr15	99154272	99155272	+	684.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139140, intron 2 of 12)	RLTR45|LTR|ERVK	27927.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60211379-3	chr18	60210863	60211863	+	684.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033767)	promoter-TSS (NM_001033767)	-714.0	NM_001033767	240327.0	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	30.0	72.0	32.5	37.5	91.0	56.0
Merged-chr5-8807756-1	chr5	8807256	8808256	+	684.0	f0_balb.idr	intron (NM_011075, intron 4 of 27)	RLTR20B2|LTR|ERVK	-9233.0	NR_152132	330031.0	Mm.389059	NR_152132		Gm5106	A230021K14|EG330031	predicted gene 5106	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-121986065-2	chr7	121985565	121986565	+	684.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028758)	TTS (NM_028758)	-4372.0	NM_001033318	233824.0	Mm.442015	NM_001033318	ENSMUSG00000034951	Cog7	5630400E24Rik|Gm167	component of oligomeric golgi complex 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37552005-2	chr9	37551505	37552505	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022029, intron 1 of 3)	intron (NM_022029, intron 1 of 3)	740.0	NM_022029	64011.0	Mm.335065	NM_022029	ENSMUSG00000053310	Nrgn	0710001B06Rik|AI838505|NG|NG/RC3|Pss1|R75334|RC3	neurogranin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70249820-2	chr12	70249320	70250320	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110202, intron 10 of 11)	intron (NM_001110202, intron 10 of 11)	21979.0	NR_045174	414124.0	Mm.416164	NR_045174	ENSMUSG00000085298	F730035M05Rik	-	RIKEN cDNA F730035M05 gene	ncRNA	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr15-84854566-2	chr15	84854066	84855066	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356573, intron 2 of 12)	CpG	533.0	NM_001356573	271305.0	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-30197779-1	chr17	30197279	30198279	+	684.0	f0_balb.idr	intron (NM_001356265, intron 5 of 5)	intron (NM_001356265, intron 5 of 5)	192740.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143473257-2	chr5	143472757	143473757	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 3 of 14)	intron (NM_144915, intron 3 of 14)	8764.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6928192-2	chr19	6927692	6928692	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008431, intron 3 of 6)	intron (NM_008431, intron 3 of 6)	-2812.0	NM_001039494	67077.0	Mm.251306	NM_001039494	ENSMUSG00000050623	Catsperz	1700019N12Rik|A430107B04Rik|MLZ-622|Tex40	cation channel sperm associated auxiliary subunit zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80693198-2	chr18	80692698	80693698	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 2 of 9)	intron (NM_198429, intron 2 of 9)	14975.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	2.0	6.5	7.5	5.0	12.5	10.5
Merged-chr1-45912929-1	chr1	45912429	45913429	+	684.0	f0_balb.idr	intron (NM_016917, intron 5 of 7)	URR1A|DNA|hAT-Charlie	12665.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148487815-2	chr2	148487315	148488315	+	684.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44280.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-69661324-2	chr18	69660824	69661824	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 15 of 19)	intron (NM_001361128, intron 15 of 19)	-264235.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-30176293-1	chr6	30175793	30176793	+	684.0	f0_balb.idr	promoter-TSS (NR_038124)	promoter-TSS (NR_038124)	-330.0	NR_038124	100463519.0	Mm.361139	NR_038124		BB283400	BF465573|Rncr4	expressed sequence BB283400	ncRNA	1.5	0.5	0.0	4.5	4.0	1.5
Merged-chr9-32137041-2	chr9	32136541	32137541	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195632, intron 2 of 21)	MLTR11B|LTR|ERVK	20905.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-128016886-2	chr1	128016386	128017386	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 7 of 20)	intron (NM_001285945, intron 7 of 20)	85585.0	NM_027678	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53133424-2	chr15	53132924	53133924	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	212759.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105516534-2	chr5	105516036	105517036	+	684.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2935.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	1.0	10.5	9.5	0.0	12.5	11.5
Merged-chr11-117839414-2	chr11	117838914	117839914	+	684.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027827, exon 11 of 11)	3' UTR (NM_027827, exon 11 of 11)	-9823.0	NM_001012273	11799.0	Mm.8552	NM_009689	ENSMUSG00000017716	Birc5	AAC-11|Api4|TIAP|survivin40	baculoviral IAP repeat-containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-71953853-1	chr9	71953353	71954353	+	684.0	f1_c57bl6.idr	intron (NM_011544, intron 5 of 20)	B1F2|SINE|Alu	-57757.0	NM_001253863	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	8.5	10.5	8.0	0.0	1.5	6.5
Merged-chr14-57794657-2	chr14	57794157	57795157	+	684.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB-int|LTR|ERVL-MaLR	-3532.0	NM_009119	20220.0	Mm.30173	NM_009119	ENSMUSG00000021963	Sap18	C530046K05Rik|D11Ertd539e|EMegR4|Sap18a|Sinbp1	Sin3-associated polypeptide 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180697026-2	chr1	180696526	180697526	+	684.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013729)	promoter-TSS (NM_013729)	8.0	NM_013729	27217.0	Mm.103647	NM_013729	ENSMUSG00000026497	Mixl1	Mm1|Mml	Mix1 homeobox-like 1 (Xenopus laevis)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94908799-2	chr10	94908299	94909299	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 3 of 30)	intron (NM_018797, intron 3 of 30)	35779.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-147178323-3	chr2	147177874	147178874	+	683.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077632, intron 2 of 2)	intron (NM_001077632, intron 2 of 2)	-5709.0	NR_030769	100313531.0	Mm.405189	NR_030769	ENSMUSG00000086509	Nkx2-2os	Gm14112|Nkx2-2as|Nkx2.2AS	NK2 homeobox 2, opposite strand	ncRNA	0.0	0.0	1.5	0.5	1.0	6.5
Merged-chr1-156465250-5	chr1	156464896	156465896	+	683.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 2 of 15)	B2_Mm1t|SINE|B2	8932.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	17.0	14.5	33.0	14.5	49.0	47.5
Merged-chr6-57513858-4	chr6	57513350	57514350	+	683.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175523, intron 6 of 6)	intron (NM_175523, intron 6 of 6)	21576.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-45494382-2	chr5	45493882	45494882	+	683.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_024434, intron 1 of 12)	intron (NM_024434, intron 1 of 12)	1008.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-97018943-3	chr9	97018426	97019426	+	683.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145134)	promoter-TSS (NM_145134)	-571.0	NM_145134	211949.0	Mm.491271	NM_145134	ENSMUSG00000046997	Spsb4	D030068E18Rik|SSB-4|Ssb4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79243476-3	chr2	79242976	79243976	+	683.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A1|DNA|hAT-Charlie	-11950.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-110932006-4	chr10	110931504	110932504	+	683.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007792, exon 2 of 6)	exon (NM_007792, exon 2 of 6)	11828.0	NM_007792	13008.0	Mm.2020	NM_007792	ENSMUSG00000020186	Csrp2	AW551867|Crp2|SmLim	cysteine and glycine-rich protein 2	protein-coding	0.0	0.5	6.0	0.0	3.5	2.0
Merged-chr1-138582467-3	chr1	138581968	138582968	+	683.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 1 of 9)	LTR16A|LTR|ERVL	37289.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-89039540-2	chr11	89039040	89040040	+	683.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019505, exon 11 of 11)	3' UTR (NM_019505, exon 11 of 11)	21208.0	NM_019505	56077.0	Mm.153695	NM_019505	ENSMUSG00000000276	Dgke	C87606|DAGK6|DGK	diacylglycerol kinase, epsilon	protein-coding	10.0	8.5	2.5	0.0	3.5	0.5
Merged-chr14-40934370-3	chr14	40933880	40934880	+	683.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	13829.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108478865-2	chr9	108478365	108479365	+	683.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008483)	promoter-TSS (NM_008483)	-997.0	NM_008483	16779.0	Mm.27560	NM_008483	ENSMUSG00000052911	Lamb2	AW211941|Lamb-2|Lams|npht	laminin, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4680831-2	chr8	4680331	4681331	+	683.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67661.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-166844763-3	chr1	166844241	166845241	+	683.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	154989.0	NR_037988	100503962.0	Mm.216842	NR_037988	ENSMUSG00000102548	Gm16701	-	predicted gene, 16701	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-116065763-2	chr2	116065266	116066266	+	683.75	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001159568)	promoter-TSS (NM_001159568)	-708.0	NM_010825	17536.0	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-46845122-4	chr7	46844637	46845637	+	683.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102727)	promoter-TSS (NR_102727)	-667.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-6358703-2	chr7	6358203	6359203	+	683.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4605.0	NM_001025163	330463.0	Mm.136456	NM_177888	ENSMUSG00000055150	Zfp78	A330079D15|KRAB12|Zfp77	zinc finger protein 78	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136154906-2	chr4	136154406	136155406	+	683.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	11084.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-13561941-2	chr2	13561441	13562441	+	683.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-12370.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90516387-2	chr2	90515886	90516886	+	683.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-37212.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	10.5	81.0	26.0	15.0	22.5	19.5
Merged-chr8-85507164-3	chr8	85506652	85507652	+	683.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173866, intron 4 of 11)	intron (NM_173866, intron 4 of 11)	14535.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	0.0	0.0	15.5	0.0	0.0	0.0
Merged-chr8-119935678-2	chr8	119935178	119936178	+	683.6999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_009462, intron 2 of 13)	intron (NM_009462, intron 2 of 13)	25318.0	NM_001310630	22224.0	Mm.256910	NM_009462	ENSMUSG00000031826	Usp10	2610014N07Rik|UBPO|Uchrp|mKIAA0190	ubiquitin specific peptidase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83858081-3	chr8	83857548	83858548	+	683.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	-42050.0	NM_181039	330814.0	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	4.5	1.0	5.0	0.0	13.0	6.0
Merged-chr19-10436145-2	chr19	10435645	10436645	+	683.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_018801, intron 4 of 8)	intron (NM_018801, intron 4 of 8)	21302.0	NM_001111140	278795.0	Mm.490638	NM_001111140	ENSMUSG00000090291	Lrrc10b	Gm705|SerdinR	leucine rich repeat containing 10B	protein-coding	0.5	0.0	5.5	0.0	0.0	0.0
Merged-chr19-12792458-2	chr19	12791958	12792958	+	683.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_053009, intron 1 of 10)	intron (NM_053009, intron 1 of 10)	3665.0	NR_024093	664779.0	Mm.290924	NM_001039718	ENSMUSG00000024695	Gm44505	Zfp91-Cntf|Zfp91Cntf	predicted readthrough transcript (NMD candidate), 44505	ncRNA	0.5	0.0	0.0	0.0	0.0	1.0
Merged-chr16-30061123-2	chr16	30060743	30061743	+	683.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4114.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	1.0	0.0	0.5	2.0	1.0	2.0
Merged-chr4-154162245-2	chr4	154161746	154162746	+	683.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1562.0	NM_026388	67808.0	Mm.288737	NM_026388	ENSMUSG00000029030	Tprgl	1200015A19Rik|Svap30|Tprg1l|mover	transformation related protein 63 regulated like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97662430-4	chr11	97661893	97662893	+	683.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1019.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	11.5	10.5	5.5	7.0	6.0	15.5
Merged-chr16-52056852-3	chr16	52056317	52057317	+	683.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	25268.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58663589-2	chr1	58663089	58664089	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347056, intron 10 of 13)	intron (NM_001347056, intron 10 of 13)	10948.0	NR_045007	100504501.0	Mm.440933	NR_045007	ENSMUSG00000102059	Gm20257	-	caspase 8 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122110124-3	chr2	122109629	122110629	+	683.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145531, intron 4 of 39)	intron (NM_145531, intron 4 of 39)	8257.0	NM_145531	214585.0	Mm.222303	NM_145531	ENSMUSG00000033396	Spg11	6030465E24Rik|A330015I11|C530005A01Rik	SPG11, spatacsin vesicle trafficking associated	protein-coding	2.0	4.0	2.5	10.5	9.5	16.5
Merged-chr7-80800954-2	chr7	80800454	80801454	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 1 of 37)	B1_Mm|SINE|Alu	2377.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	13.0	13.5	2.0	2.5	0.5	5.0
Merged-chr15-31223250-2	chr15	31222750	31223750	+	683.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1135.0	NM_146057	223453.0	Mm.222867	NM_146057	ENSMUSG00000039168	Dap	4921531N22Rik|AI789753|AU040360	death-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45102321-2	chr7	45101821	45102821	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010189, intron 3 of 6)	intron (NM_010189, intron 3 of 6)	1501.0	NM_001357117	14132.0	Mm.3303	NM_010189	ENSMUSG00000003420	Fcgrt	FcRn	Fc receptor, IgG, alpha chain transporter	protein-coding	1.0	2.5	4.0	15.5	6.5	9.0
Merged-chr10-118862375-2	chr10	118861875	118862875	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001014390, intron 2 of 2)	MTEa|LTR|ERVL-MaLR	6528.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	23.0	36.5	17.5	8.0	28.5	19.5
Merged-chr4-135986221-2	chr4	135985721	135986721	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025411, intron 2 of 5)	(CA)n|Simple_repeat|Simple_repeat	1023.0	NM_025411	66193.0	Mm.29131	NM_025411	ENSMUSG00000028669	Pithd1	1110049F12Rik|AA408179|Trp26	PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1	protein-coding	14.0	0.0	9.5	24.0	4.0	12.0
Merged-chr18-15063000-2	chr18	15062500	15063500	+	683.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001142731, exon 1 of 5)	exon (NM_001142731, exon 1 of 5)	582.0	NM_001142731	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69669407-2	chr11	69668907	69669907	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159375, intron 4 of 10)	intron (NM_001159375, intron 4 of 10)	3016.0	NM_144958	13681.0	Mm.26680	NM_144958	ENSMUSG00000059796	Eif4a1	BM-010|Ddx2a|Eif4	eukaryotic translation initiation factor 4A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-10441364-2	chr8	10440864	10441864	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001319151, intron 19 of 34)	intron (NM_001319151, intron 19 of 34)	287453.0	NM_001319151	244281.0	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101841954-2	chr5	101841454	101842454	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 66 of 66)	intron (NM_172882, intron 66 of 66)	76824.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.0	0.5	2.0	2.0	1.0	4.0
Merged-chr10-43871571-2	chr10	43871071	43872071	+	683.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	30165.0	NM_001081054	76563.0	Mm.5904	NM_001081054	ENSMUSG00000019863	Qrsl1	2700038P16Rik|C80053|GatA	glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7203766-2	chr19	7203266	7204266	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134150, intron 3 of 6)	intron (NM_134150, intron 3 of 6)	2518.0	NM_134150	107260.0	Mm.203921	NM_134150	ENSMUSG00000024767	Otub1	AI850305	OTU domain, ubiquitin aldehyde binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84742304-2	chr8	84741803	84742803	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081982, intron 2 of 9)	intron (NM_001081982, intron 2 of 9)	32066.0	NM_001081981	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	2.0	12.0	2.0	2.0	1.5	3.0
Merged-chr6-118141950-2	chr6	118141450	118142450	+	683.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-2810.0	NM_030165	78752.0	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-125128630-2	chr4	125128130	125129130	+	683.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153159)	promoter-TSS (NM_153159)	-749.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51184425-2	chr3	51183937	51184937	+	683.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-40010.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	235.5	375.5	277.0	36.5	112.0	86.0
Merged-chr13-24641636-3	chr13	24641138	24642138	+	683.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080381, intron 1 of 14)	intron (NM_001080381, intron 1 of 14)	2990.0	NM_029679	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66828548-2	chr9	66828048	66829048	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026674, intron 3 of 5)	B3A|SINE|B2	6158.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-97000736-2	chr5	97000236	97001236	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 1 of 15)	Tigger17a|DNA|TcMar-Tigger	3047.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	0.5	0.5	9.5	0.0	4.5	9.0
Merged-chr6-87739291-2	chr6	87738816	87739816	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159697, intron 2 of 7)	intron (NM_001159697, intron 2 of 7)	8447.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	0.0	2.0	5.0	0.0	0.0	2.5
Merged-chr6-120837329-2	chr6	120836829	120837829	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153516, intron 1 of 6)	intron (NM_153516, intron 1 of 6)	1099.0	NM_153516	94044.0	Mm.27990	NM_153516	ENSMUSG00000009112	Bcl2l13	BCL-RAMBO|E430016C20Rik|Mil-1|Mil1	BCL2-like 13 (apoptosis facilitator)	protein-coding	4.0	8.5	14.0	2.5	3.0	12.0
Merged-chr14-75147341-2	chr14	75146841	75147841	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	L1_Mus3|LINE|L1	10916.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26961298-2	chr8	26960798	26961798	+	683.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16038.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136088825-2	chr5	136088325	136089325	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039103, intron 1 of 19)	intron (NM_001039103, intron 1 of 19)	4909.0	NM_001039103	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32166976-2	chr19	32166476	32167476	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	44037.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124486145-2	chr5	124485645	124486645	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029532, intron 1 of 1)	intron (NM_029532, intron 1 of 1)	2990.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38703573-2	chr6	38703073	38704073	+	683.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001294144, exon 13 of 15)	exon (NM_001294144, exon 13 of 15)	40504.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6166851-2	chr2	6166351	6167351	+	683.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26400.0	NR_040333	320132.0	Mm.445891	NR_040333	ENSMUSG00000087125	A230108P19Rik	-	RIKEN cDNA A230108P19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-94243304-2	chr2	94242804	94243804	+	683.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1851.0	NR_029752	723953.0		NR_029752	ENSMUSG00000065511	Mir129-2	Mirn129-2|mir-129-2	microRNA 129-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70538194-2	chr14	70537696	70538696	+	683.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145219, exon 8 of 8)	3' UTR (NM_145219, exon 8 of 8)	-7055.0	NM_180588	72549.0	Mm.46742	NM_180588	ENSMUSG00000033589	Reep4	2700029E10Rik	receptor accessory protein 4	protein-coding	0.0	0.0	5.0	0.0	0.0	0.0
Merged-chr11-50214285-2	chr11	50213785	50214785	+	683.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3465.0	NM_011018	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77603493-2	chr10	77602993	77603993	+	683.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2604.0	NM_001301672	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71379104-1	chr8	71378604	71379604	+	683.5	f1_balb.idr	intron (NM_010150, intron 1 of 3)	intron (NM_010150, intron 1 of 3)	2848.0	NM_010150	13864.0	Mm.28989	NM_010150	ENSMUSG00000002393	Nr2f6	AV090102|COUP-TF3|EAR2|Erbal2	nuclear receptor subfamily 2, group F, member 6	protein-coding	5.5	3.0	0.5	6.0	0.0	5.5
Merged-chr4-136160784-2	chr4	136160284	136161284	+	683.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11490.0	NM_177733	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83176210-2	chr15	83175710	83176710	+	683.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4002.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62349498-2	chr10	62348998	62349998	+	683.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_038038, exon 2 of 2)	non-coding (NR_038038, exon 2 of 2)	8891.0	NR_038038	70162.0	Mm.441212	NR_038038		Hk1os	2210417K05Rik	hexokinase 1, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-29288110-2	chr5	29287610	29288610	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020295, intron 8 of 16)	B3|SINE|B2	90280.0	NM_020295	56873.0	Mm.41572	NM_020295	ENSMUSG00000010721	Lmbr1	1110048D14Rik|AU017641	limb region 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58106130-2	chr11	58105591	58106591	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356477, intron 1 of 6)	intron (NM_001356477, intron 1 of 6)	1862.0	NM_001356477	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	1.0	0.5	9.5	25.5	19.0	26.0
Merged-chr11-70003579-2	chr11	70003079	70004079	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007888, intron 1 of 14)	intron (NM_007888, intron 1 of 14)	2953.0	NM_007888	13543.0	Mm.5114	NM_007888	ENSMUSG00000020888	Dvl2	-	dishevelled segment polarity protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122368089-1	chr7	122367589	122368589	+	683.5	f0_balb.idr	intron (NM_001316672, intron 2 of 16)	MLT1O|LTR|ERVL-MaLR	78964.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-110531145-2	chr14	110530645	110531645	+	683.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	224004.0	NM_175499	239250.0	Mm.49728	NM_175499	ENSMUSG00000045871	Slitrk6	4832410J21Rik|Sltk6	SLIT and NTRK-like family, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-50444329-1	chr3	50443829	50444829	+	683.5	f0_balb.idr	promoter-TSS (NM_011990)	promoter-TSS (NM_011990)	-716.0	NM_011990	26570.0	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	4.0	0.0	0.0	4.0	0.0	0.0
Merged-chr6-122304482-3	chr6	122303952	122304952	+	683.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-4268.0	NM_010749	17113.0	Mm.249225	NM_010749	ENSMUSG00000007458	M6pr	CD-MPR|Mpr46	mannose-6-phosphate receptor, cation dependent	protein-coding	4.5	5.0	4.0	0.0	0.0	0.0
Merged-chr2-11005929-3	chr2	11005431	11006431	+	683.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-166451.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120189430-3	chr10	120188913	120189913	+	683.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_001359184, intron 1 of 11)	intron (NM_001359184, intron 1 of 11)	12184.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	15.0	19.0	23.5	0.5	4.5	3.0
Merged-chr1-135280860-3	chr1	135280344	135281344	+	683.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159624, intron 1 of 9)	MLTR31A_MM|LTR|ERVK	3240.0	NM_145417	215615.0	Mm.291048	NM_145417	ENSMUSG00000041926	Rnpep	-	arginyl aminopeptidase (aminopeptidase B)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105556949-4	chr4	105556446	105557446	+	683.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	399599.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	24.0	33.0	27.0	21.0	24.5	26.0
Merged-chr9-107676249-2	chr9	107675749	107676749	+	683.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_008140, exon 7 of 9)	exon (NM_008140, exon 7 of 9)	3343.0	NM_008140	14685.0	Mm.284853	NM_008140	ENSMUSG00000034837	Gnat1	Gnat-1|Ird1|Ird2|Tralpha|irdc|irdr|transducin	guanine nucleotide binding protein, alpha transducing 1	protein-coding	0.0	0.0	2.5	0.0	0.0	0.0
Merged-chr17-57061327-2	chr17	57060827	57061827	+	683.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347408)	promoter-TSS (NM_001347408)	-874.0	NM_001359814	224912.0	Mm.284447	NM_177638	ENSMUSG00000044279	Crb3	5730439B18|AU015179|AU041752	crumbs family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165290215-2	chr2	165289715	165290715	+	683.333374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_207706, exon 22 of 22)	3' UTR (NM_207706, exon 22 of 22)	-2377.0	NR_045544	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171257358-3	chr1	171256854	171257854	+	683.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172845, intron 7 of 8)	intron (NM_172845, intron 7 of 8)	7225.0	NM_172845	240913.0	Mm.491147	NM_172845	ENSMUSG00000006403	Adamts4	ADAM-TS4|ADAMTS-2|ADMP-1	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4	protein-coding	2.5	6.5	7.0	0.0	0.0	3.0
Merged-chr14-10229362-3	chr14	10228840	10229840	+	683.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 5 of 9)	intron (NM_001360141, intron 5 of 9)	224118.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88242319-3	chr7	88241825	88242825	+	683.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35760.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-54024964-3	chr5	54024516	54025516	+	683.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	26493.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33295305-3	chr2	33294788	33295788	+	683.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290570, intron 3 of 16)	intron (NM_001290570, intron 3 of 16)	76206.0	NM_001290570	241308.0	Mm.274249	NM_175211	ENSMUSG00000038831	Ralgps1	5830418G11Rik|AI853783|AI854138|RALGEF2|RALGPS1A|RalGEF 2|mKIAA0351	Ral GEF with PH domain and SH3 binding motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-24923630-3	chr8	24923118	24924118	+	683.311096	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153397, intron 3 of 21)	intron (NM_153397, intron 3 of 21)	25186.0	NM_001293693	353188.0	Mm.269223	NM_153397	ENSMUSG00000037437	Adam32	-	a disintegrin and metallopeptidase domain 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6690349-2	chr2	6689849	6690849	+	683.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	31313.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103044292-2	chr14	103043792	103044792	+	683.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2720.0	NM_008392	16365.0	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121302708-2	chr9	121302233	121303233	+	683.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	B3A|SINE|B2	5231.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	5.0	8.0	5.5	0.5	4.5	1.5
Merged-chr10-127089701-2	chr10	127089201	127090201	+	683.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301014, intron 13 of 17)	intron (NM_001301014, intron 13 of 17)	10794.0	NM_001033263	216439.0	Mm.336761	NM_001033263	ENSMUSG00000025422	Agap2	AGAP-2|Centg1|PIKE|cnt-g1|mKIAA0167	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-28263625-2	chr5	28263125	28264125	+	683.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17837.0	NM_001310512	269637.0	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101417731-2	chr7	101417231	101418231	+	683.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3960.0	NM_001008548	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34029080-3	chr17	34028500	34029500	+	683.233337	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013543)	promoter-TSS (NM_013543)	-945.0	NM_013543	14979.0	Mm.275452	NM_013543	ENSMUSG00000073422	H2-Ke6	D17H6S112E|H-2Ke6|Hsd17b8|Ke-6|Ke6|Ring2	H2-K region expressed gene 6	protein-coding	0.0	1.5	4.5	0.0	6.5	2.5
Merged-chr14-66279547-7	chr14	66279065	66280065	+	683.171448	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	1487.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80906503-2	chr10	80906003	80907003	+	683.166687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347140)	promoter-TSS (NM_001347140)	-91.0	NM_001347140	16907.0	Mm.7362	NM_010722	ENSMUSG00000062075	Lmnb2	-	lamin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21692481-2	chr16	21691981	21692981	+	683.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001881, intron 1 of 1)	intron (NM_001001881, intron 1 of 1)	2184.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36070090-3	chr1	36069555	36070555	+	683.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	1655.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81497375-2	chr10	81496875	81497875	+	683.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010102)	TTS (NM_010102)	-1012.0	NM_134009	103425.0	Mm.302791	NM_134009	ENSMUSG00000020238	Ncln	3100002P13Rik|AW120537	nicalin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110649813-2	chr7	110649313	110650313	+	683.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22156.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-179875553-2	chr2	179875002	179876002	+	683.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009867, intron 8 of 15)	intron (NM_009867, intron 8 of 15)	101144.0	NM_001081092	228980.0	Mm.235542	NM_001081092	ENSMUSG00000039117	Taf4	135kDa|AI450312|TAFII130|TAFII135|Taf2c1|Taf4a	TATA-box binding protein associated factor 4	protein-coding	5.5	0.0	0.5	10.5	6.0	5.5
Merged-chr18-46462458-2	chr18	46461958	46462958	+	683.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3358.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31289277-3	chr17	31288756	31289756	+	683.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6227.0	NM_153062	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87512468-2	chr17	87511968	87512968	+	683.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65533.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	0.0	0.5	1.0	0.0	0.5	1.0
Merged-chr19-15925820-3	chr19	15925312	15926312	+	683.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177420)	promoter-TSS (NM_177420)	-753.0	NM_177420	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr15-89158180-4	chr15	89157679	89158679	+	683.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159521, intron 31 of 37)	intron (NM_001159521, intron 31 of 37)	4729.0	NR_106066	102465672.0		NR_106066	ENSMUSG00000106328	Mir7118	mmu-mir-7118	microRNA 7118	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142821427-2	chr5	142820927	142821927	+	683.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4040.0	NM_001122730	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-55393359-2	chr15	55392859	55393859	+	683.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181277, intron 14 of 47)	intron (NM_181277, intron 14 of 47)	85609.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120791922-2	chr14	120791422	120792422	+	683.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41B|LTR|ERVL	-119272.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123886126-2	chr5	123885626	123886626	+	683.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6106.0	NM_175520	243270.0	Mm.33362	NM_175520	ENSMUSG00000049241	Hcar1	Gpr81	hydrocarboxylic acid receptor 1	protein-coding	0.0	1.5	4.5	11.0	2.0	0.5
Merged-chr2-169874124-1	chr2	169873624	169874624	+	683.0	f0_balb.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	89063.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	2.0	2.5	2.5	8.5	6.5	1.5
Merged-chr3-136322183-2	chr3	136321683	136322683	+	683.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 1 of 16)	intron (NM_001033350, intron 1 of 16)	3883.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	33.5	78.0	37.5	53.0	66.0	39.0
Merged-chr7-28794610-2	chr7	28794110	28795110	+	683.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358916, intron 4 of 11)	intron (NM_001358916, intron 4 of 11)	5641.0	NM_177158	320435.0	Mm.74632	NM_177158	ENSMUSG00000051735	Rinl	5830482F20Rik|9930116N10Rik	Ras and Rab interactor-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58453935-1	chr16	58453435	58454435	+	683.0	f0_balb.idr	intron (NM_001356484, intron 9 of 15)	ID_B1|SINE|B4	45400.0	NM_028523	73379.0	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-77045505-1	chr13	77045005	77046005	+	683.0	f0_balb.idr	intron (NM_134071, intron 20 of 20)	intron (NM_134071, intron 20 of 20)	89963.0	NM_134071	105377.0	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding	12.5	3.5	1.5	11.0	22.0	3.5
Merged-chr18-11695619-1	chr18	11695119	11696119	+	683.0	f0_balb.idr	intron (NM_001081223, intron 5 of 18)	Lx7|LINE|L1	38270.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55416606-1	chr13	55416106	55417106	+	683.0	f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1374.0	NM_029303	75477.0	Mm.432537	NM_029303	ENSMUSG00000044444	Pfn3	1700012P12Rik	profilin 3	protein-coding	0.0	0.0	0.0	0.0	0.5	0.5
Merged-chr5-24352330-2	chr5	24351830	24352830	+	683.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013569)	promoter-TSS (NM_013569)	-726.0	NM_013569	16511.0	Mm.6539	NM_013569	ENSMUSG00000038319	Kcnh2	AI326795|ERG1|LQT|Lqt2|M-erg|Merg1|merg1a|merg1b	potassium voltage-gated channel, subfamily H (eag-related), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-128421662-2	chr1	128421162	128422162	+	683.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	-4246.0	NM_145507	226414.0	Mm.28693	NM_145507	ENSMUSG00000026356	Dars	5730439G15Rik	aspartyl-tRNA synthetase	protein-coding	0.0	1.5	0.5	0.0	0.0	0.0
Merged-chr7-87938526-1	chr7	87938026	87939026	+	683.0	f0_balb.idr	intron (NM_001081414, intron 4 of 9)	intron (NM_001081414, intron 4 of 9)	-339559.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164372840-1	chr2	164372340	164373340	+	683.0	f0_balb.idr	Intergenic	Intergenic	-16333.0	NM_011414	20568.0	Mm.371583	NM_011414	ENSMUSG00000017002	Slpi	ALP	secretory leukocyte peptidase inhibitor	protein-coding	1.0	0.0	0.5	4.0	4.0	1.0
Merged-chr11-82036077-3	chr11	82035561	82036561	+	683.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011333, intron 1 of 2)	intron (NM_011333, intron 1 of 2)	484.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4443640-2	chr18	4443140	4444140	+	683.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR41A2|LTR|ERV1	68048.0	NM_001361009	67440.0	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-20298869-2	chr8	20298369	20299369	+	683.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1437.0	NR_030708	547150.0	Mm.359054	NR_030708	ENSMUSG00000071796	6820431F20Rik	-	cadherin 11 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50589658-2	chr9	50589158	50590158	+	683.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	14191.0	NM_025848	66925.0	Mm.10406	NM_025848	ENSMUSG00000000171	Sdhd	3110001M13Rik|AVLL5809|C78570|PRO19626	succinate dehydrogenase complex, subunit D, integral membrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124623036-1	chr2	124622536	124623536	+	683.0	f0_balb.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	12740.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81338099-2	chr7	81337599	81338599	+	683.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	7135.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36988731-2	chr17	36988231	36989231	+	683.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001115075, exon 3 of 6)	exon (NM_001115075, exon 3 of 6)	773.0	NM_001115075	240095.0	Mm.246609	NM_001115075	ENSMUSG00000024459	H2-M5	CRW2|D130003B22Rik|H-2M5	histocompatibility 2, M region locus 5	protein-coding	0.0	3.5	3.0	0.0	0.0	0.5
Merged-chr17-83764733-1	chr17	83764233	83765233	+	683.0	f0_balb.idr	intron (NM_054082, intron 7 of 16)	intron (NM_054082, intron 7 of 16)	58570.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-40381553-1	chr8	40381053	40382053	+	683.0	f1_balb.idr	intron (NM_030110, intron 13 of 14)	intron (NM_030110, intron 13 of 14)	-42262.0	NM_178395	70546.0	Mm.34326	NM_178395	ENSMUSG00000039470	Zdhhc2	5730415P04Rik|6430583A19Rik|DHHC-2	zinc finger, DHHC domain containing 2	protein-coding	2.5	3.0	0.0	0.0	4.5	0.5
Merged-chr11-104171776-2	chr11	104171276	104172276	+	683.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313928, intron 7 of 11)	intron (NM_001313928, intron 7 of 11)	-14551.0	NM_001082535	237958.0	Mm.117063	NM_199019	ENSMUSG00000049506	Sppl2c	4933407P14Rik|IMP5	signal peptide peptidase 2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-56007362-2	chr16	56006862	56007862	+	683.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173026, exon 11 of 11)	3' UTR (NM_173026, exon 11 of 11)	22355.0	NM_001356449	76302.0	Mm.310642	NM_001024622	ENSMUSG00000071533	Pcnp	1110018D06Rik|AI647035	PEST proteolytic signal containing nuclear protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3433408-2	chr12	3432911	3433911	+	683.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270988, intron 1 of 11)	B1_Mm|SINE|Alu	6554.0	NM_172421	75302.0	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2, transcriptional regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102141622-2	chr15	102141122	102142122	+	683.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2564.0	NM_008344	16012.0	Mm.358609	NM_008344	ENSMUSG00000023046	Igfbp6	IGFBP-6	insulin-like growth factor binding protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69913646-2	chr8	69913265	69914265	+	683.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 9 of 12)	intron (NM_001286450, intron 9 of 12)	-11207.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	0.0	0.0	1.5	0.0	3.0	0.0
Merged-chr4-118290735-1	chr4	118290235	118291235	+	683.0	f1_balb.idr	intron (NM_011213, intron 1 of 32)	CpG	662.0	NM_011213	19268.0	Mm.29855	NM_011213	ENSMUSG00000033295	Ptprf	AA591035|LAR|LARS|RPTP-LAR	protein tyrosine phosphatase, receptor type, F	protein-coding	0.0	2.0	0.5	0.0	2.0	0.5
Merged-chr9-106445594-1	chr9	106445094	106446094	+	683.0	f1_c57bl6.idr	5' UTR (NM_001110271, exon 2 of 6)	5' UTR (NM_001110271, exon 2 of 6)	2084.0	NM_001359225	68644.0	Mm.268925	NM_145919	ENSMUSG00000042210	Abhd14a	1110013B16Rik|AW558221|Dorz1	abhydrolase domain containing 14A	protein-coding	0.0	6.0	0.0	0.0	0.0	1.0
Merged-chr5-77191271-1	chr5	77190771	77191771	+	683.0	f1_c57bl6.idr	Intergenic	Intergenic	19934.0	NM_001289767	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	19.5	41.5	42.5	5.0	15.0	8.0
Merged-chr5-146807244-1	chr5	146806744	146807744	+	683.0	f1_balb.idr	Intergenic	L1MB4|LINE|L1	-12288.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	183.0	283.0	324.0	93.0	239.0	161.0
Merged-chr9-13622485-1	chr9	13621985	13622985	+	683.0	f0_balb.idr	intron (NM_001013813, intron 1 of 3)	intron (NM_001013813, intron 1 of 3)	2496.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0.0	0.5	0.0	5.5	5.0	0.0
Merged-chr8-117216716-2	chr8	117216216	117217216	+	683.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-40303.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27191203-2	chr7	27190703	27191703	+	683.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285825, intron 4 of 6)	intron (NM_001285825, intron 4 of 6)	4557.0	NM_001046637	53607.0	Mm.386890	NM_015782	ENSMUSG00000061479	Snrpa	C430021M15Rik|Rnu1a-1|Rnu1a1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127528494-2	chr10	127527994	127528994	+	683.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183297, intron 1 of 1)	intron (NM_183297, intron 1 of 1)	-6050.0	NM_028230	108037.0	Mm.29890	NM_028230	ENSMUSG00000025403	Shmt2	2700043D08Rik|AA408223|AA986903|SHMT	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59353381-2	chr2	59352881	59353881	+	683.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 20 of 20)	intron (NM_175464, intron 20 of 20)	33301.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-31213224-1	chr8	31212724	31213724	+	683.0	f1_c57bl6.idr	intron (NM_001286425, intron 3 of 3)	intron (NM_001286425, intron 3 of 3)	25893.0	NM_001286425	171167.0	Mm.334477	NM_134161	ENSMUSG00000046152	Fut10	fuc-TX|fut10A	fucosyltransferase 10	protein-coding	3.0	0.0	0.0	0.0	0.0	2.0
Merged-chr15-58347780-1	chr15	58347280	58348280	+	683.0	f1_balb.idr	intron (NM_027211, intron 7 of 8)	intron (NM_027211, intron 7 of 8)	-23611.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	0.0	1.0	2.0	0.0	6.0	0.5
Merged-chr7-110384639-2	chr7	110384139	110385139	+	683.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 17 of 40)	intron (NM_177324, intron 17 of 40)	162936.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117452693-2	chr8	117452193	117453193	+	683.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106045)	promoter-TSS (NR_106045)	-330.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39966922-2	chr6	39966422	39967422	+	683.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360978, intron 1 of 3)	B4A|SINE|B4	95486.0	NM_001360978	434008.0	Mm.53915	NM_001004182	ENSMUSG00000057716	Tmem178b	A930009E05Rik|EG434008|Gm5567	transmembrane protein 178B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57527258-2	chr6	57526758	57527758	+	683.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175523, intron 1 of 6)	Lx8|LINE|L1	8168.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47503679-2	chr19	47503179	47504179	+	683.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175360, intron 9 of 9)	intron (NM_175360, intron 9 of 9)	-9303.0	NR_045322	100503104.0	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA	0.0	0.5	0.0	1.0	2.5	0.0
Merged-chr3-32366378-2	chr3	32365878	32366878	+	683.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009517)	promoter-TSS (NM_009517)	-713.0	NM_009517	22401.0	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131173329-1	chr2	131172829	131173829	+	683.0	f1_balb.idr	intron (NM_027641, intron 1 of 6)	intron (NM_027641, intron 1 of 6)	1481.0	NM_027641	70997.0	Mm.252722	NM_027641	ENSMUSG00000027329	Spef1	4931426K16Rik|Clamp	sperm flagellar 1	protein-coding	0.0	0.0	1.0	1.5	0.0	2.5
Merged-chr13-47287883-1	chr13	47287383	47288383	+	683.0	f0_balb.idr	Intergenic	Intergenic	93880.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	9.5	4.0	3.0	12.5	13.0	3.0
Merged-chr2-19629520-2	chr2	19629020	19630020	+	683.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	28377.0	NR_033642	100041244.0	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-72436956-2	chr4	72436456	72437456	+	683.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B5|LTR|ERVL	235712.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21821118-2	chr14	21820618	21821618	+	683.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-10443.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	4.0	14.5	2.0	10.0	3.0	10.0
Merged-chr6-66890903-1	chr6	66890403	66891403	+	683.0	f0_balb.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-5494.0	NM_001177559	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-3571004-1	chr17	3570504	3571504	+	683.0	f1_balb.idr	Intergenic	Intergenic	13180.0	NR_045302	68230.0	Mm.431352	NR_045302		1700102H20Rik	-	RIKEN cDNA 1700102H20 gene	ncRNA	2.5	1.5	2.0	0.0	1.0	2.0
Merged-chr5-122950738-1	chr5	122950238	122951238	+	683.0	f1_balb.idr	intron (NM_001003953, intron 6 of 22)	intron (NM_001003953, intron 6 of 22)	38361.0	NM_001003953	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	0.0	2.5	0.0	5.0	0.0	2.0
Merged-chr8-122414870-2	chr8	122414375	122415375	+	683.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029993, intron 17 of 18)	MTC|LTR|ERVL-MaLR	-7145.0	NM_145834	234836.0	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63092563-2	chr9	63092063	63093063	+	683.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54417.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78213894-2	chr11	78213394	78214394	+	683.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009297, intron 28 of 36)	B1_Mur4|SINE|Alu	20502.0	NM_001045516	216974.0	Mm.50974	NM_001045516	ENSMUSG00000044122	Proca1	4933404M19Rik	protein interacting with cyclin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91072252-2	chr2	91071752	91072752	+	683.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1937.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	3.0	16.0	3.5	3.0	11.5	4.0
Merged-chr18-53166648-2	chr18	53166140	53167140	+	683.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-9652.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99371788-3	chr5	99371303	99372303	+	683.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-118876.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167699048-2	chr2	167698548	167699548	+	683.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	7871.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90115265-2	chr3	90114765	90115765	+	683.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029937, intron 3 of 39)	intron (NM_029937, intron 3 of 39)	11133.0	NM_029937	77595.0	Mm.159949	NM_029937	ENSMUSG00000027939	Nup210l	4930548O11Rik|R26-EGFP|Tg(Gt(ROSA)26Sor-EGFP)130910Eps	nucleoporin 210-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-24688366-1	chr1	24687866	24688866	+	683.0	f0_balb.idr	intron (NM_026719, intron 2 of 15)	ORR1A2-int|LTR|ERVL-MaLR	9448.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	12.0	7.5	3.5	8.0	8.0	9.0
Merged-chr12-55024230-1	chr12	55023730	55024730	+	683.0	f1_balb.idr	Intergenic	RMER15|LTR|ERVL	-37894.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	0.0	1.5	2.0	1.0	5.0	2.5
Merged-chr10-96328102-2	chr10	96327602	96328602	+	683.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	101895.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30236581-2	chr2	30236081	30237081	+	683.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_028299)	TTS (NR_028299)	1050.0	NR_028299	67350.0	Mm.402683	NR_028299		1700084E18Rik	-	RIKEN cDNA 1700084E18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-30213492-2	chr17	30212992	30213992	+	683.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA7|LINE|L1	182688.0	NR_030688	623169.0	Mm.440508	NR_030688		Gm6402	EG623169	ribosomal protein S17 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-117349418-1	chr13	117348918	117349918	+	683.0	f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	128845.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	4.5	0.0	3.0	1.0	5.5	0.0
Merged-chr19-3709316-3	chr19	3708831	3709831	+	683.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358257, intron 1 of 3)	intron (NM_001358257, intron 1 of 3)	920.0	NM_001358257	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-68117709-4	chr8	68117212	68118212	+	683.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143138.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0.0	0.0	6.5	3.5	0.0	0.0
Merged-chr15-9130576-2	chr15	9130076	9131076	+	683.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 2 of 9)	intron (NM_013787, intron 2 of 9)	9878.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-54526291-1	chr4	54525791	54526791	+	683.0	f0_balb.idr	Intergenic	Intergenic	-421654.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	0.0	0.0	2.0	3.0	5.0	11.0
Merged-chr8-123411605-2	chr8	123411105	123412105	+	682.916626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023279)	promoter-TSS (NM_023279)	41.0	NM_023279	22152.0	Mm.40068	NM_023279	ENSMUSG00000062380	Tubb3	3200002H15Rik|M(beta)3|M(beta)6	tubulin, beta 3 class III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154703041-4	chr2	154702566	154703566	+	682.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46040.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-13319468-3	chr15	13318987	13319987	+	682.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-145812.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-41999800-3	chr9	41999286	42000286	+	682.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357261, intron 26 of 42)	intron (NM_001357261, intron 26 of 42)	77427.0	NM_001357261	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0.0	0.0	0.0	2.0	0.0	4.0
Merged-chr2-26325960-3	chr2	26325472	26326472	+	682.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355575, intron 7 of 13)	intron (NM_001355575, intron 7 of 13)	6202.0	NM_001199147	67839.0	Mm.266611	NM_153410	ENSMUSG00000026930	Gpsm1	1810037C22Rik|AW107933|Ags3	G-protein signalling modulator 1 (AGS3-like, C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28795128-2	chr7	28794628	28795628	+	682.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358916, intron 6 of 11)	MT2B|LTR|ERVL	6159.0	NM_177158	320435.0	Mm.74632	NM_177158	ENSMUSG00000051735	Rinl	5830482F20Rik|9930116N10Rik	Ras and Rab interactor-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94564688-2	chr16	94564188	94565188	+	682.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-5518.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94549968-2	chr10	94549468	94550468	+	682.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359760)	promoter-TSS (NM_001359760)	-904.0	NM_001359761	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-119060741-2	chr10	119060241	119061241	+	682.8000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10242.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr1-85794524-6	chr1	85794022	85795022	+	682.777771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355047, intron 1 of 9)	intron (NM_001355047, intron 1 of 9)	505.0	NM_001355047	12283.0	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-48047761-4	chr6	48047262	48048262	+	682.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347139)	promoter-TSS (NM_001347139)	32.0	NM_001347139	72306.0	Mm.381553	NM_001081382	ENSMUSG00000071477	Zfp777	2500002G23Rik	zinc finger protein 777	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97065194-2	chr15	97064694	97065694	+	682.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9238.0	NM_027052	69354.0	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98811765-2	chr12	98811265	98812265	+	682.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081191, intron 31 of 43)	intron (NM_001081191, intron 31 of 43)	40743.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45896164-2	chr19	45895664	45896664	+	682.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_198296, intron 20 of 25)	ID_B1|SINE|B4	-80101.0	NM_145703	80906.0	Mm.213204	NM_030716	ENSMUSG00000025221	Kcnip2	KChIP2	Kv channel-interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115193520-2	chr5	115193022	115194022	+	682.716675	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310712, intron 1 of 5)	CpG	859.0	NM_001310712	29867.0	Mm.38551	NM_013879	ENSMUSG00000029544	Cabp1	caldendrin	calcium binding protein 1	protein-coding	0.5	6.0	0.0	0.0	13.0	3.0
Merged-chr3-95671441-2	chr3	95670941	95671941	+	682.700012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12720.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75006788-2	chr18	75006289	75007289	+	682.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358306, intron 1 of 2)	B1F|SINE|Alu	950.0	NM_001001181	407819.0	Mm.29866	NM_001001181	ENSMUSG00000036299	BC031181	-	cDNA sequence BC031181	protein-coding	7.5	21.0	16.0	8.5	28.0	23.0
Merged-chr19-6273109-2	chr19	6272609	6273609	+	682.700012	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-3787.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-58477150-3	chr2	58476702	58477702	+	682.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355048, intron 5 of 10)	intron (NM_001355048, intron 5 of 10)	84208.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61898561-2	chr9	61898061	61899061	+	682.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15949.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-45384391-3	chr5	45383968	45384968	+	682.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131933, intron 1 of 5)	RMER6B|LTR|ERVK	39932.0	NR_131933	52401.0	Mm.33854	NR_131933	ENSMUSG00000029092	D5Ertd615e	4930435H24Rik	DNA segment, Chr 5, ERATO Doi 615, expressed	ncRNA	8.0	0.0	0.0	0.0	0.5	1.5
Merged-chr18-4068841-3	chr18	4068360	4069360	+	682.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96972.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73132875-3	chr14	73132486	73133486	+	682.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-9524.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11726107-2	chr16	11725607	11726607	+	682.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 19 of 20)	intron (NM_028964, intron 19 of 20)	-53595.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121550412-2	chr11	121549912	121550912	+	682.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029878, intron 15 of 38)	intron (NM_029878, intron 15 of 38)	-31070.0	NM_178763	319530.0	Mm.11395	NM_178763	ENSMUSG00000039238	Zfp750	A030007D23Rik|Znf750	zinc finger protein 750	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64060529-2	chr9	64060029	64061029	+	682.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10700.0	NR_040713	68697.0	Mm.491042	NR_040713	ENSMUSG00000097036	1110036E04Rik	-	RIKEN cDNA 1110036E04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-24596480-4	chr15	24595989	24596989	+	682.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	817275.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-69029297-3	chr14	69028795	69029795	+	682.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009285)	promoter-TSS (NM_009285)	6.0	NM_009285	20855.0	Mm.20911	NM_009285	ENSMUSG00000014813	Stc1	Stc	stanniocalcin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74528273-3	chr15	74527798	74528798	+	682.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359759, intron 1 of 30)	MIR|SINE|MIR	12102.0	NM_001359759	107831.0	Mm.43133	NM_174991	ENSMUSG00000034730	Adgrb1	B830018M07Rik|Bai1|R75078|mKIAA4089	adhesion G protein-coupled receptor B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88740049-3	chr10	88739557	88740557	+	682.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025859, intron 4 of 5)	ORR1D2|LTR|ERVL-MaLR	8643.0	NM_025859	104303.0	Mm.291247	NM_025859	ENSMUSG00000060904	Arl1	2310008D22Rik|AU019749	ADP-ribosylation factor-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75037429-2	chr8	75036929	75037929	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136259, intron 1 of 15)	intron (NM_001136259, intron 1 of 15)	3743.0	NM_011622	21968.0	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24292830-2	chr13	24292330	24293330	+	682.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-12040.0	NM_026825	68732.0	Mm.211047	NM_026825	ENSMUSG00000021338	Carmil1	1110037D04Rik|AI425970|CARMIL|CARML1|D130057M20|Lrrc16|Lrrc16a	capping protein regulator and myosin 1 linker 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55769008-2	chr19	55768508	55769508	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	27198.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-78815318-2	chr18	78814818	78815818	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053099, intron 4 of 5)	L3|LINE|CR1	-218368.0	NM_207651	27411.0	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	0.0	0.0	0.5	2.0	0.0	2.5
Merged-chr14-55091115-2	chr14	55090615	55091615	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039198, intron 1 of 9)	intron (NM_001039198, intron 1 of 9)	933.0	NM_001039198	239102.0	Mm.441113	NM_001039198	ENSMUSG00000040721	Zfhx2	ZFH-5	zinc finger homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99184121-2	chr9	99183621	99184621	+	682.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-43910.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-54690720-2	chr1	54690225	54691225	+	682.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 16 of 27)	intron (NM_001081433, intron 16 of 27)	-133041.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	6.5	2.0	3.0	1.5	32.0	8.5
Merged-chr11-54733675-1	chr11	54733175	54734175	+	682.5	f0_balb.idr	intron (NM_178626, intron 3 of 5)	ORR1F|LTR|ERVL-MaLR	54028.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123903349-2	chr4	123902849	123903849	+	682.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1664.0	NM_019660	56309.0	Mm.446553	NM_019660	ENSMUSG00000028647	Mycbp	5730488M09Rik|AW552132|AW742590|Amy-1	MYC binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88244898-2	chr3	88244398	88245398	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021375, intron 7 of 9)	intron (NM_021375, intron 7 of 9)	9786.0	NM_021375	58176.0	Mm.103777	NM_021375	ENSMUSG00000104445	Rhbg	-	Rhesus blood group-associated B glycoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-94233801-3	chr2	94233310	94234310	+	682.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7568.0	NR_106139	102465777.0		NR_106139	ENSMUSG00000106336	Mir129b	mmu-mir-129b	microRNA 129b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152805547-2	chr2	152805047	152806047	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	URR1A|DNA|hAT-Charlie	22942.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-16899718-2	chr12	16899205	16900205	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009072, intron 1 of 32)	B1_Mus2|SINE|Alu	4727.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	7.0	37.5	38.0	12.0	28.5	40.0
Merged-chr11-79641020-2	chr11	79640520	79641520	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175543, intron 3 of 14)	intron (NM_175543, intron 3 of 14)	-17857.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-35170243-2	chr4	35169743	35170743	+	682.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12759.0	NM_178061	214944.0	Mm.32968	NM_178061	ENSMUSG00000073910	Mob3b	8430436F23Rik|A430018A01Rik|Mobkl2b	MOB kinase activator 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-36091006-1	chr8	36090506	36091506	+	682.5	f1_c57bl6.idr	Intergenic	Intergenic	-3822.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	1.5	1.5	3.0	1.5	0.0	3.0
Merged-chr2-151972456-2	chr2	151971956	151972956	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146127, intron 1 of 1)	L2a|LINE|L2	938.0	NM_001289151	73847.0	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97827518-2	chr6	97827014	97828014	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	20456.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	24.0	26.5	39.0	18.5	51.5	31.5
Merged-chr6-129416638-2	chr6	129416138	129417138	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205363, intron 4 of 6)	RMER17C|LTR|ERVK	7776.0	NM_001205364	232414.0	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-42061055-2	chr13	42060554	42061554	+	682.5	f0_balb.idr|f0_c57.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	9033.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64734688-2	chr5	64734186	64735186	+	682.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-68837.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	9.0	13.0	2.0	8.5	13.0	23.0
Merged-chr8-36758710-2	chr8	36758209	36759209	+	682.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 5 of 17)	intron (NM_001194940, intron 5 of 17)	-25655.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	6.5	9.5	3.5	18.0	0.0	5.0
Merged-chr12-30583454-2	chr12	30582926	30583926	+	682.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-1017.0	NM_172049	211986.0	Mm.34035	NM_172049	ENSMUSG00000043061	Tmem18	BC024093	transmembrane protein 18	protein-coding	3.0	0.0	1.0	0.0	12.5	1.0
Merged-chr12-24663092-2	chr12	24662592	24663592	+	682.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178357)	TTS (NM_178357)	11721.0	NM_178357	194655.0	Mm.9616	NM_178357	ENSMUSG00000020653	Klf11	9830142A17|D12Ertd427e|Tieg2|Tieg2b|Tieg3	Kruppel-like factor 11	protein-coding	0.0	1.0	1.0	0.0	6.0	0.0
Merged-chr5-139400506-2	chr5	139400006	139401006	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	MTC|LTR|ERVL-MaLR	-5881.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151346938-2	chr1	151346438	151347438	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039511, intron 1 of 7)	intron (NM_001039511, intron 1 of 7)	2440.0	NM_001039511	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108509386-2	chr6	108508886	108509886	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 54 of 61)	intron (NM_010585, intron 54 of 61)	19643.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120587238-2	chr8	120586738	120587738	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178856, intron 2 of 4)	RSINE1|SINE|B4	1837.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114663124-2	chr11	114662624	114663624	+	682.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5419.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46498978-2	chr19	46498478	46499478	+	682.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2670.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111487380-2	chr12	111486880	111487880	+	682.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1557.0	NM_001033248	212539.0	Mm.81916	NM_001033248	ENSMUSG00000010529	Gm266	-	predicted gene 266	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134062274-2	chr1	134061774	134062774	+	682.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	16881.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46849350-2	chr11	46848852	46849852	+	682.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	38553.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	14.0	2.5	10.0	29.0	48.0	33.0
Merged-chr19-6059367-2	chr19	6058867	6059867	+	682.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001160239, exon 5 of 5)	exon (NM_001160239, exon 5 of 5)	1400.0	NM_001190436	14109.0	Mm.329631	NM_007990	ENSMUSG00000038274	Fau	MNSFbeta	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived)	protein-coding	9.0	35.5	9.5	3.5	34.0	14.0
Merged-chr18-77869810-3	chr18	77869315	77870315	+	682.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 6 of 14)	intron (NM_013831, intron 6 of 14)	-68652.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55526694-2	chr4	55526118	55527118	+	682.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010637)	TTS (NM_010637)	5857.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	5.5	0.0	1.0	2.5	0.0	0.0
Merged-chr13-113852450-2	chr13	113851950	113852950	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	57942.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-56266247-2	chr9	56265747	56266747	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172924, intron 3 of 6)	intron (NM_172924, intron 3 of 6)	-105177.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84842740-2	chr8	84842240	84843240	+	682.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_007591, exon 9 of 9)	exon (NM_007591, exon 9 of 9)	-2075.0	NM_009010	19358.0	Mm.255539	NM_009010	ENSMUSG00000003813	Rad23a	2310040P19Rik|AL024030|HR23A|mHR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding	1.5	18.5	13.5	0.5	2.5	7.0
Merged-chr18-61076242-2	chr18	61075742	61076742	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008809, intron 14 of 22)	intron (NM_008809, intron 14 of 22)	-29330.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113627306-2	chr5	113626806	113627806	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	16297.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	2.0	4.0	5.5	3.5	2.5	4.0
Merged-chr5-80209519-2	chr5	80209019	80210019	+	682.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	-811052.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.0	0.0	0.0	0.5	1.0	0.0
Merged-chr13-93244425-2	chr13	93243925	93244925	+	682.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-52008.0	NM_001361537	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	2.5	1.0	5.0	0.0	3.0	11.0
Merged-chr10-81364889-2	chr10	81364389	81365389	+	682.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001014836, exon 2 of 4)	exon (NM_001014836, exon 2 of 4)	931.0	NM_001014836	432479.0	Mm.440450	NM_001014836	ENSMUSG00000020234	4930404N11Rik	2210409H10Rik|5730551K18Rik|AI854616	RIKEN cDNA 4930404N11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-84792592-2	chr11	84792092	84793092	+	682.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26923.0	NM_145433	217038.0	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik	mitochondrial rRNA methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-8686841-2	chr16	8686341	8687341	+	682.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6071.0	NM_001324517	436336.0	Mm.357666	NM_001324517		Gm5767	EG436336|Gm43786	predicted gene 5767	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61943763-2	chr9	61943263	61944263	+	682.416687	f1_balb.idr|f1_c57bl6.idr	intron (NM_024245, intron 3 of 22)	intron (NM_024245, intron 3 of 22)	3036.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54781165-4	chr6	54780667	54781667	+	682.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-35749.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	20.0	31.0	42.0	33.0	41.0	35.5
Merged-chr10-80343782-2	chr10	80343282	80344282	+	682.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_104340, intron 6 of 11)	intron (NR_104340, intron 6 of 11)	4666.0	NM_001285435	66548.0	Mm.71891	NM_025629	ENSMUSG00000043822	Adamtsl5	2010109H09Rik|Thsd6	ADAMTS-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-48869350-2	chr13	48868850	48869850	+	682.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011078, intron 1 of 21)	intron (NM_011078, intron 1 of 21)	1535.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25762572-2	chr7	25762072	25763072	+	682.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 17 of 19)	B1_Mur2|SINE|Alu	-7813.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81085829-2	chr15	81085329	81086329	+	682.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	19218.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	7.0	4.5	11.0	7.0	4.5	11.5
Merged-chr8-94442240-2	chr8	94441740	94442740	+	682.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7137.0	NR_015514	320377.0	Mm.486022	NR_015514		9330175E14Rik	A630085K21	RIKEN cDNA 9330175E14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62600121-2	chr10	62599621	62600621	+	682.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019553, intron 1 of 14)	intron (NM_019553, intron 1 of 14)	2177.0	NM_019553	56200.0	Mm.413275	NM_019553	ENSMUSG00000020075	Ddx21	AI255159|AL022742|D10Ertd645e|D10Wsu42e	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25578647-2	chr2	25578147	25579147	+	682.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001005424, exon 1 of 1)	exon (NM_001005424, exon 1 of 1)	1452.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84429514-1	chr3	84429014	84430014	+	682.333313	f0_balb.idr	Intergenic	Intergenic	-49593.0	NR_040752	75309.0	Mm.159497	NR_040752	ENSMUSG00000104004	4930565D16Rik	-	RIKEN cDNA 4930565D16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59248291-3	chr11	59247787	59248787	+	682.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009522, exon 4 of 4)	3' UTR (NM_009522, exon 4 of 4)	-20020.0	NM_007476	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	6.5	9.0	0.5	6.5	11.5	3.5
Merged-chr13-20784981-1	chr13	20784481	20785481	+	682.333313	f1_balb.idr	Intergenic	Intergenic	-9132.0	NM_001281854	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	20.5	17.0	15.5	22.5	41.0	33.5
Merged-chr4-109060745-2	chr4	109060245	109061245	+	682.333313	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001355191)	TTS (NM_001355191)	43090.0	NR_030432	791075.0		NR_030432	ENSMUSG00000076444	Mir761	Mirn761|mir-761|mmu-mir-761	microRNA 761	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79794349-4	chr3	79793827	79794827	+	682.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	48335.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	0.0	1.0	3.0	0.0	1.0	3.0
Merged-chr9-15715129-2	chr9	15714629	15715629	+	682.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172289, intron 1 of 10)	intron (NM_172289, intron 1 of 10)	5391.0	NM_172289	234967.0	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-92630362-2	chr7	92629870	92630870	+	682.25	f0_balb.idr|f1_balb.idr	intron (NM_028665, intron 2 of 11)	intron (NM_028665, intron 2 of 11)	6772.0	NM_028665	73845.0	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	3.0	0.0	6.0	0.0	5.5	0.0
Merged-chr14-122222544-2	chr14	122222120	122223120	+	682.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_029556, intron 1 of 7)	intron (NM_029556, intron 1 of 7)	11018.0	NR_015532	68245.0	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	0.0	1.5	0.0	0.0	0.0	1.0
Merged-chr1-182494692-3	chr1	182494199	182495199	+	682.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009794, intron 2 of 20)	intron (NM_009794, intron 2 of 20)	22911.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109621369-3	chr11	109620863	109621863	+	682.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9974.0	NM_145940	52639.0	Mm.35817	NM_145940	ENSMUSG00000041895	Wipi1	4930533H01Rik|AW411817|D11Ertd498e	WD repeat domain, phosphoinositide interacting 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145156181-3	chr4	145155684	145156684	+	682.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001276502, exon 18 of 69)	exon (NM_001276502, exon 18 of 69)	34482.0	NM_001276502	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-25000333-3	chr19	24999821	25000821	+	682.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 1 of 47)	intron (NM_028785, intron 1 of 47)	792.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	109.0	183.0	162.0	90.5	165.0	142.5
Merged-chr4-53081002-2	chr4	53080502	53081502	+	682.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 16 of 49)	intron (NM_013454, intron 16 of 49)	69122.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70252255-2	chr9	70251755	70252755	+	682.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	44905.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-115313541-2	chr10	115313041	115314041	+	682.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_024454, intron 1 of 6)	intron (NM_024454, intron 1 of 6)	2050.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160383053-3	chr2	160382556	160383556	+	682.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15991.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53069802-2	chr4	53069302	53070302	+	682.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_013454, exon 27 of 50)	exon (NM_013454, exon 27 of 50)	57922.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141563247-3	chr7	141562746	141563746	+	682.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357068, intron 1 of 21)	intron (NM_001357068, intron 1 of 21)	1066.0	NM_007459	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-37100407-2	chr15	37099892	37100892	+	682.083374	f0_balb.idr|f0_c57.idr	Intergenic	MLTR11B|LTR|ERVK	-92990.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90447070-4	chr9	90446535	90447535	+	682.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-176266.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19268113-2	chr7	19267613	19268613	+	682.025024	f1_balb.idr|f1_c57bl6.idr	intron (NM_009499, intron 1 of 12)	PB1D9|SINE|Alu	3741.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	10.0	29.0	12.5	13.5	38.0	16.5
Merged-chr9-66888194-3	chr9	66887681	66888681	+	682.011108	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	31524.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-97046564-2	chr5	97046064	97047064	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 7 of 15)	RLTR20A4|LTR|ERVK	48875.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	2.5	3.0	1.0	8.0	4.5	4.0
Merged-chr15-58660719-1	chr15	58660219	58661219	+	682.0	f0_balb.idr	Intergenic	Intergenic	162708.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54777707-2	chr14	54777209	54778209	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	4177.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	30.0	75.0	38.5	12.0	49.5	25.0
Merged-chr3-87832390-2	chr3	87831890	87832890	+	682.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	-14365.0	NM_001025571	27371.0	Mm.86361	NM_021309	ENSMUSG00000028071	Sh2d2a	Lad|Ribp|Tsad	SH2 domain containing 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84947318-2	chr8	84946824	84947824	+	682.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357328)	promoter-TSS (NM_001357328)	333.0	NM_001357326	234542.0	Mm.461701	NM_144929	ENSMUSG00000048617	Rtbdn	A330096I21Rik|BC022744|Rtbnd	retbindin	protein-coding	2.5	0.0	4.5	0.0	3.5	0.0
Merged-chr3-130694326-2	chr3	130693826	130694826	+	682.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15118.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31782952-2	chr2	31782452	31783452	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001283046, intron 4 of 11)	intron (NM_001283046, intron 4 of 11)	22779.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-47397361-2	chr10	47396853	47397853	+	682.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_A|LINE|L1	1152604.0	NR_028276	108637.0		NR_028276	ENSMUSG00000096263	Snord14c	Gm23107|Rnu14|U14	small nucleolar RNA, C/D box 14C	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24919911-2	chr7	24919411	24920411	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130151, intron 15 of 29)	intron (NM_001130151, intron 15 of 29)	15565.0	NM_001130152	16801.0	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124997521-3	chr6	124997039	124998039	+	682.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145927)	promoter-TSS (NM_001145927)	819.0	NM_175696	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	0.5	2.0	3.0	5.5	18.5	17.5
Merged-chr9-62374410-4	chr9	62373931	62374931	+	682.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 4 of 6)	intron (NM_009672, intron 4 of 6)	33088.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75943337-1	chr10	75942837	75943837	+	682.0	f0_balb.idr	Intergenic	L1ME2|LINE|L1	-2665.0	NM_001277132	333670.0	Mm.291320	NM_001037714	ENSMUSG00000050157	Gm867	Gm736	predicted gene 867	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119429406-1	chr11	119428906	119429906	+	682.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	38934.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	12.0	24.0	4.0	3.5	13.0	6.0
Merged-chr17-34631019-4	chr17	34630505	34631505	+	682.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030890, exon 2 of 4)	exon (NM_030890, exon 2 of 4)	1319.0	NM_030890	260297.0	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31|SynDIG4	proline-rich transmembrane protein 1	protein-coding	6.0	2.5	3.5	0.0	6.0	5.0
Merged-chr7-4624007-2	chr7	4623507	4624507	+	682.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	6475.0	NM_023440	68255.0	Mm.389784	NM_023440	ENSMUSG00000045282	Tmem86b	C330014O21Rik	transmembrane protein 86B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-4944907-2	chr1	4944407	4945407	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177795, intron 2 of 5)	intron (NM_001177795, intron 2 of 5)	73827.0	NM_001290372	58175.0	Mm.103771	NM_021374	ENSMUSG00000002459	Rgs20	2900073E09Rik|Rgsz1	regulator of G-protein signaling 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-143919612-2	chr1	143919112	143920112	+	682.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84537.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28335813-2	chr7	28335313	28336313	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013676, intron 2 of 29)	intron (NM_013676, intron 2 of 29)	2906.0	NM_013676	20924.0	Mm.285906	NM_013676	ENSMUSG00000003435	Supt5	AL033283|AL033321|AU019549|Spt5|Supt5h	suppressor of Ty 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65728860-2	chr17	65728360	65729360	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	43892.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54957233-2	chr12	54956733	54957733	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013815, intron 3 of 26)	L1MB8|LINE|L1	29103.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	0.0	0.5	0.5	0.0	1.0	0.0
Merged-chr15-77765461-2	chr15	77764961	77765961	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 35 of 40)	intron (NM_022410, intron 35 of 40)	-8451.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.0	1.0	0.5	1.5	2.0	0.0
Merged-chr2-171265873-2	chr2	171265373	171266373	+	682.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	534066.0	NM_001163686	76829.0	Mm.41633	NM_029761	ENSMUSG00000027560	Dok5	2700055C10Rik	docking protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138843966-2	chr1	138843466	138844466	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010714, intron 2 of 6)	GA-rich|Low_complexity|Low_complexity	-1522.0	NM_001025565	16876.0	Mm.250732	NM_010714	ENSMUSG00000019230	Lhx9	3110009O07Rik|BB104635|LH2B	LIM homeobox protein 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9793852-1	chr3	9793352	9794352	+	682.0	f0_c57.idr	intron (NM_001195031, intron 1 of 8)	ORR1E|LTR|ERVL-MaLR	39827.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.0	0.0	0.5	0.0	1.0	0.5
Merged-chr8-116945850-3	chr8	116945274	116946274	+	682.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177700, intron 1 of 3)	intron (NM_177700, intron 1 of 3)	2381.0	NM_177700	234776.0	Mm.259736	NM_177700	ENSMUSG00000047388	Atmin	Asciz|gpg6|mKIAA0431	ATM interactor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120689006-2	chr7	120688506	120689506	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164580, intron 1 of 2)	B3A|SINE|B2	11386.0	NM_001164580	233812.0	Mm.276479	NM_001164580	ENSMUSG00000046096	Mosmo	Atthog	modulator of smoothened	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-94947495-1	chr9	94946995	94947995	+	682.0	f1_balb.idr	intron (NM_177909, intron 8 of 15)	intron (NM_177909, intron 8 of 15)	195666.0	NR_106116	102465763.0		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	9.5	5.5	5.0	5.5	2.5	5.0
Merged-chr11-69044809-2	chr11	69044309	69045309	+	682.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011496)	promoter-TSS (NM_011496)	-828.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-88528733-1	chr11	88528233	88529233	+	682.0	f1_balb.idr	intron (NM_054043, intron 6 of 13)	intron (NM_054043, intron 6 of 13)	-90518.0	NR_131025	68397.0	Mm.426889	NR_131025		0610039H22Rik	-	RIKEN cDNA 0610039H22 gene	ncRNA	14.0	5.0	9.5	2.0	0.0	1.0
Merged-chr4-47294042-1	chr4	47293542	47294542	+	682.0	f0_balb.idr	intron (NM_009928, intron 28 of 39)	intron (NM_009928, intron 28 of 39)	-59180.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-64047505-1	chr11	64047005	64048005	+	682.0	f1_c57bl6.idr	intron (NM_178379, intron 3 of 6)	intron (NM_178379, intron 3 of 6)	31967.0	NM_178379	70383.0	Mm.340211	NM_178379	ENSMUSG00000042148	Cox10	2410004F01Rik|AU042636	cytochrome c oxidase assembly protein 10	protein-coding	0.0	14.5	9.0	0.0	3.5	1.5
Merged-chr16-38713441-3	chr16	38712895	38713895	+	682.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020260)	promoter-TSS (NM_020260)	-360.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102012198-1	chr5	102011698	102012698	+	682.0	f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	CT-rich|Low_complexity|Low_complexity	57723.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	14.0	52.5	41.0	13.0	48.5	34.0
Merged-chr1-152580227-2	chr1	152579727	152580727	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	44990.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118169672-2	chr11	118169172	118170172	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 11 of 12)	B4A|SINE|B4	-40453.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40332007-2	chr9	40331507	40332507	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357618, intron 3 of 20)	intron (NM_001357618, intron 3 of 20)	-1465.0	NR_040728	73558.0	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72257391-2	chr8	72256891	72257891	+	682.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007456)	TTS (NM_007456)	17373.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	8.5
Merged-chr7-44930378-1	chr7	44929878	44930878	+	682.0	f1_balb.idr	promoter-TSS (NM_007458)	promoter-TSS (NM_007458)	-888.0	NM_001077264	11771.0	Mm.6877	NM_007458	ENSMUSG00000060279	Ap2a1	Adtaa	adaptor-related protein complex 2, alpha 1 subunit	protein-coding	11.5	23.5	7.0	3.0	6.0	6.5
Merged-chr2-119014949-1	chr2	119014449	119015449	+	682.0	f1_balb.idr	Intergenic	Intergenic	14444.0	NM_199310	269336.0	Mm.292465	NM_199310	ENSMUSG00000039983	Ccdc32	Gm631	coiled-coil domain containing 32	protein-coding	3.5	25.0	0.0	5.0	20.5	3.0
Merged-chr6-143499149-2	chr6	143498649	143499649	+	682.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36359.0	NR_155418	75904.0	Mm.414916	NR_155418	ENSMUSG00000084971	4930579D09Rik	-	RIKEN cDNA 4930579D09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51108930-2	chr13	51108430	51109430	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001283029, intron 1 of 5)	Tigger7|DNA|TcMar-Tigger	7383.0	NM_001283029	20729.0	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-15986766-1	chr16	15986266	15987266	+	682.0	f0_balb.idr	intron (NM_001355731, intron 7 of 18)	intron (NM_001355731, intron 7 of 18)	99480.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-52315152-2	chr14	52314652	52315652	+	682.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_015772, exon 2 of 2)	exon (NM_015772, exon 2 of 2)	1171.0	NM_001244916	50524.0	Mm.39487	NM_015772	ENSMUSG00000049532	Sall2	AI225809|AW559097|Msal-2|Sal-2|mKIAA0360|p150(Sal2)	spalt like transcription factor 2	protein-coding	9.5	0.0	0.0	2.0	0.0	1.5
Merged-chr18-82559270-2	chr18	82558770	82559770	+	682.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001025245)	TTS (NM_001025245)	4762.0	NM_001025254	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25494401-2	chr14	25493901	25494901	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	35216.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-94532296-2	chr6	94531809	94532809	+	682.0	f0_c57.idr|f1_balb.idr	intron (NM_026255, intron 3 of 9)	Lx8|LINE|L1	31995.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	3.5	0.0	5.0	0.0	1.5	4.0
Merged-chr10-117833727-2	chr10	117833227	117834227	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	12247.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29887431-2	chr11	29886931	29887931	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 5 of 41)	L1_Mus2|LINE|L1	-61763.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	4.0	4.5	4.0	0.5	11.5	0.5
Merged-chr2-60045139-2	chr2	60044639	60045639	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 2 of 35)	B2_Mm2|SINE|B2	80601.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129744428-1	chr4	129743928	129744928	+	682.0	f1_balb.idr	Intergenic	Intergenic	-2125.0	NR_045036	20218.0	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	53.0	96.5	78.0	35.0	68.0	52.5
Merged-chr7-47076277-2	chr7	47075777	47076777	+	682.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6947.0	NR_106023	102465639.0		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108212594-2	chr3	108212094	108213094	+	682.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008596, exon 6 of 6)	3' UTR (NM_008596, exon 6 of 6)	-2067.0	NM_175183	72522.0	Mm.187326	NM_175183	ENSMUSG00000048997	Atxn7l2	2610528J18Rik	ataxin 7-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97321219-1	chr6	97320719	97321719	+	682.0	f1_c57bl6.idr	intron (NM_145148, intron 12 of 23)	intron (NM_145148, intron 12 of 23)	-68439.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	13.5	2.0	2.5	8.5	4.0	1.5
Merged-chr13-64378322-1	chr13	64377822	64378822	+	682.0	f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-7802.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	9.0	8.5	5.0	18.5	29.0	21.0
Merged-chr7-118799739-1	chr7	118799239	118800239	+	682.0	f1_balb.idr	intron (NM_027815, intron 19 of 30)	intron (NM_027815, intron 19 of 30)	55874.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	9.0	8.0	20.5	14.5	7.0	15.0
Merged-chr2-31081812-2	chr2	31081312	31082312	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	B3|SINE|B2	14688.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-89907214-2	chr16	89906714	89907714	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 3 of 27)	intron (NM_009384, intron 3 of 27)	53613.0	NM_009384	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36061325-2	chr17	36060825	36061825	+	682.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2954.0	NM_001199967	100529082.0	Mm.484641	NM_001199967	ENSMUSG00000079492	Gm11127	-	predicted gene 11127	protein-coding	2.0	10.0	5.0	0.0	8.5	0.0
Merged-chr16-93604724-2	chr16	93604224	93605224	+	682.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145482)	promoter-TSS (NM_145482)	-909.0	NM_145482	224440.0	Mm.10628	NM_145482	ENSMUSG00000022948	Setd4	AY037804|C21orf18|ORF21	SET domain containing 4	protein-coding	87.0	137.0	140.0	90.0	131.5	149.0
Merged-chr15-51867558-2	chr15	51867058	51868058	+	682.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-2097.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79924888-2	chr10	79924388	79925388	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-2155.0	NM_001288626	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110458060-2	chr9	110457560	110458560	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360306, intron 1 of 9)	intron (NM_001360306, intron 1 of 9)	18634.0	NM_001360306	270201.0	Mm.41744	NM_177771	ENSMUSG00000054792	Klhl18	A930041K15|AW545966	kelch-like 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114292457-2	chr6	114291957	114292957	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178703, intron 1 of 15)	intron (NM_178703, intron 1 of 15)	9822.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-8548658-2	chr9	8548158	8549158	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282086, intron 1 of 11)	intron (NM_001282086, intron 1 of 11)	4516.0	NM_001282087	22068.0	Mm.325086	NM_013838	ENSMUSG00000031997	Trpc6	AV025995|LLHWJM002|LLHWJM003|LLHWJM004|TRP-6|Trrp6|mtrp6	transient receptor potential cation channel, subfamily C, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71158385-2	chr17	71157885	71158885	+	682.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25147.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	4.5	0.5	4.5	1.5	9.5	3.5
Merged-chr6-38694151-2	chr6	38693651	38694651	+	682.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31082.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120406248-2	chr8	120405748	120406748	+	682.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82618.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44540596-3	chr13	44540085	44541085	+	681.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100858.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134259772-3	chr6	134259274	134260274	+	681.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 6 of 8)	intron (NM_001303102, intron 6 of 8)	-136555.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	11.5	24.5	13.5	10.0	13.5	15.0
Merged-chr10-127514878-3	chr10	127514403	127515403	+	681.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001098789)	promoter-TSS (NM_001098789)	-36.0	NM_001098789	407790.0	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-60820569-2	chr19	60820079	60821079	+	681.833374	f0_balb.idr|f1_c57bl6.idr	intron (NM_026437, intron 3 of 8)	intron (NM_026437, intron 3 of 8)	9024.0	NM_001347464	67894.0	Mm.26148	NM_026437	ENSMUSG00000024993	Fam45a	1810055E12Rik	family with sequence similarity 45, member A	protein-coding	54.5	165.5	103.5	55.5	176.5	116.5
Merged-chr17-87036667-2	chr17	87036167	87037167	+	681.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019936)	TTS (NM_019936)	11106.0	NM_019936	56724.0	Mm.109329	NM_019936	ENSMUSG00000024146	Cript	1200020A08Rik|AA589469	cysteine-rich PDZ-binding protein	protein-coding	0.0	10.5	10.0	5.0	15.0	3.5
Merged-chr10-79965225-2	chr10	79964725	79965725	+	681.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_175450, exon 4 of 10)	exon (NM_175450, exon 4 of 10)	5073.0	NM_175450	216156.0	Mm.35828	NM_175450	ENSMUSG00000035754	Wdr18	2310012I10Rik|AU044733|AW122032	WD repeat domain 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17836592-2	chr17	17836092	17837092	+	681.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162909, intron 3 of 8)	intron (NM_001162909, intron 3 of 8)	5617.0	NM_001162909	75202.0	Mm.227456	NM_029205	ENSMUSG00000080316	Spaca6	4930546H06Rik|9530079D04Rik|B230206P06Rik|Ncrna00085|SPACA6A|let-7e|mir-125a|mir-99b	sperm acrosome associated 6	protein-coding	0.5	0.0	3.0	3.5	1.5	0.0
Merged-chr11-75976878-3	chr11	75976375	75977375	+	681.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23037.0	NM_198637	74230.0	Mm.271247	NM_198637	ENSMUSG00000053783	1700016K19Rik	Liat1	RIKEN cDNA 1700016K19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99145937-2	chr9	99145437	99146437	+	681.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5726.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr19-37502680-4	chr19	37502183	37503183	+	681.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	37429.0	NR_131009	78640.0	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	8.5	18.5	12.0	7.0	21.0	7.5
Merged-chr7-35030610-3	chr7	35030117	35031117	+	681.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 11 of 14)	intron (NM_008820, intron 11 of 14)	25949.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75313199-2	chr10	75312699	75313699	+	681.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001145826)	TTS (NM_001145826)	-3678.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127767153-2	chr7	127766653	127767653	+	681.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172748, intron 9 of 10)	L2a|LINE|L2	-2662.0	NM_198424	269999.0	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	0.0	0.0	0.5	0.0	0.0	1.5
Merged-chr8-104372194-2	chr8	104371694	104372694	+	681.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_153582, intron 1 of 3)	B1_Mur2|SINE|Alu	23613.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-4374875-2	chr9	4374375	4375375	+	681.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-1677.0	NM_145609	78100.0	Mm.206549	NM_145609	ENSMUSG00000041124	Msantd4	8430410K20Rik|Mysantd4	Myb/SANT-like DNA-binding domain containing 4 with coiled-coils	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50728041-3	chr9	50727504	50728504	+	681.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178118)	promoter-TSS (NM_178118)	-20.0	NM_178118	330938.0	Mm.82598	NM_178118	ENSMUSG00000032064	Dixdc1	4930563F16Rik|BC048182|Ccd1|Ccd1Aalpha1L|Ccd1Abeta1L|Ccd1BalphaL|Ccd1BbetaL|Ccd1CL|mKIAA1735	DIX domain containing 1	protein-coding	4.0	6.5	3.0	0.0	2.5	2.0
Merged-chr13-45571876-3	chr13	45571382	45572382	+	681.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 5 of 6)	intron (NM_001199304, intron 5 of 6)	64438.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-9074954-3	chr15	9074457	9075457	+	681.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040395, intron 1 of 12)	intron (NM_001040395, intron 1 of 12)	3697.0	NM_001040395	68646.0	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122545507-3	chr6	122545013	122546013	+	681.711121	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8296.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47439620-2	chr17	47439120	47440120	+	681.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_145489, intron 1 of 4)	intron (NM_145489, intron 1 of 4)	-2245.0	NM_029296	75462.0	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	1.5	1.0	1.0	0.0	0.0	2.0
Merged-chr4-87700647-3	chr4	87700146	87701146	+	681.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105677.0	NM_001286158	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46507344-2	chr19	46506844	46507844	+	681.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	5696.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154662079-2	chr2	154661579	154662579	+	681.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	5053.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-22010342-3	chr10	22009854	22010854	+	681.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15688.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	1.5	7.5	2.5	0.0	2.0	0.0
Merged-chr9-63129945-3	chr9	63129430	63130430	+	681.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17050.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119249390-3	chr9	119248887	119249887	+	681.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359582, intron 13 of 18)	intron (NM_001359582, intron 13 of 18)	-17695.0	NR_033303	109280.0	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	10.0	31.0	11.5	14.5	20.5	16.5
Merged-chr17-33821974-2	chr17	33821429	33822429	+	681.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_030697, intron 8 of 10)	intron (NM_030697, intron 8 of 10)	2633.0	NM_016844	54127.0	Mm.352374	NM_016844	ENSMUSG00000067288	Rps28	-	ribosomal protein S28	protein-coding	1.5	2.5	3.0	8.0	3.0	1.5
Merged-chr4-133213502-2	chr4	133213033	133214033	+	681.599976	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008154)	promoter-TSS (NM_008154)	-997.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	0.0	1.5	3.0	0.0	2.5	7.0
Merged-chr11-102435814-2	chr11	102435314	102436314	+	681.599976	f1_balb.idr|f1_c57bl6.idr	exon (NM_008175, exon 11 of 13)	exon (NM_008175, exon 11 of 13)	5492.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	1.0	5.5	0.5	0.5	0.0	4.0
Merged-chr9-64959982-2	chr9	64959482	64960482	+	681.583374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175153)	promoter-TSS (NM_175153)	-850.0	NM_001077631	69882.0	Mm.272616	NM_175153	ENSMUSG00000034263	Ints14	2010321M09Rik|Vwa9	integrator complex subunit 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-17051158-3	chr7	17050655	17051655	+	681.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001162950, exon 5 of 15)	exon (NM_001162950, exon 5 of 15)	5524.0	NM_016868	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90220374-3	chr3	90219850	90220850	+	681.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026677)	promoter-TSS (NM_026677)	-434.0	NM_026677	68328.0	Mm.29355	NM_026677	ENSMUSG00000027935	Rab13	0610007N03Rik|B230212B15Rik	RAB13, member RAS oncogene family	protein-coding	2.5	8.5	13.0	1.5	6.5	11.0
Merged-chr19-34483743-3	chr19	34483224	34484224	+	681.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-8589.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89367628-2	chr3	89367128	89368128	+	681.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2375.0	NM_029974	77772.0	Mm.164013	NM_029974	ENSMUSG00000042672	Dcst1	A330106H01Rik	DC-STAMP domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	4.0
Merged-chr12-11267595-2	chr12	11267095	11268095	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361252, intron 1 of 9)	intron (NM_001361252, intron 1 of 9)	1709.0	NM_025695	67241.0	Mm.173953	NM_025695	ENSMUSG00000020608	Smc6	2810489L22Rik|3830418C19Rik|AA990493|AU018782|AW742439|SMC-6|Smc6l1|mKIAA4103	structural maintenance of chromosomes 6	protein-coding	0.0	0.0	0.0	1.0	0.0	1.0
Merged-chr12-108653744-2	chr12	108653244	108654244	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 4 of 14)	intron (NM_001163396, intron 4 of 14)	-4876.0	NR_029771	723909.0		NR_029771	ENSMUSG00000065436	Mir342	Mirn342|mmu-mir-342	microRNA 342	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-104749782-2	chr12	104749236	104750236	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_148948, intron 1 of 26)	intron (NM_148948, intron 1 of 26)	2216.0	NM_148948	192119.0	Mm.21135	NM_148948	ENSMUSG00000041415	Dicer1	1110006F08Rik|D12Ertd7e|mKIAA0928	dicer 1, ribonuclease type III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-57574982-2	chr3	57574482	57575482	+	681.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001168281, exon 2 of 7)	exon (NM_001168281, exon 2 of 7)	894.0	NM_133784	97064.0	Mm.405029	NM_133784	ENSMUSG00000027803	Wwtr1	2310058J06Rik|2610021I22Rik|C78399|Taz	WW domain containing transcription regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47407445-2	chr19	47406945	47407945	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 2 of 14)	intron (NM_008018, intron 2 of 14)	56966.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	5.5	0.0	4.0	5.5	0.0	2.5
Merged-chr14-19948405-2	chr14	19947905	19948905	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285909, intron 3 of 5)	intron (NM_001285909, intron 3 of 5)	28288.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-64759937-2	chr16	64759437	64760437	+	681.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	11002.0	NM_026273	67609.0	Mm.212157	NM_026273	ENSMUSG00000059920	4930453N24Rik	AI649104|din	RIKEN cDNA 4930453N24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47614047-2	chr17	47613547	47614547	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020048, intron 2 of 3)	intron (NM_020048, intron 2 of 3)	2451.0	NM_020048	56771.0	Mm.59393	NM_020048	ENSMUSG00000092558	Med20	1110011O05Rik|2410115I17Rik|AU018348|Trfp	mediator complex subunit 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100315868-2	chr11	100315368	100316368	+	681.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4081.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-56114664-2	chr2	56114164	56115164	+	681.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-671147.0	NR_105751	102465169.0		NR_105751	ENSMUSG00000098437	Mir195b	Gm27491|mmu-mir-195b	microRNA 195b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86885850-2	chr4	86885371	86886371	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290543, intron 1 of 5)	intron (NM_001290543, intron 1 of 5)	11457.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	10.5	10.5	8.5	4.0	18.5	8.5
Merged-chr2-117329223-2	chr2	117328723	117329723	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 2 of 16)	intron (NM_011246, intron 2 of 16)	13654.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135473251-2	chr5	135472751	135473751	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	B1F1|SINE|Alu	71871.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-7850953-3	chr14	7850455	7851455	+	681.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081427, intron 1 of 45)	RMER5|LTR|ERV1	32998.0	NM_134080	286940.0	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101150216-2	chr4	101149716	101150716	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183024, intron 11 of 11)	intron (NM_183024, intron 11 of 11)	81178.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-106970941-2	chr4	106970448	106971448	+	681.5	f0_balb.idr|f0_c57.idr	intron (NM_001355532, intron 1 of 14)	intron (NM_001355532, intron 1 of 14)	47763.0	NM_001355532	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	0.0	0.0	0.0	0.0	6.0	0.0
Merged-chr7-4653345-2	chr7	4652845	4653845	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172894, intron 1 of 23)	intron (NM_172894, intron 1 of 23)	5605.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13198828-2	chr16	13198328	13199328	+	681.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57653.0	NM_001122667	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-77878531-1	chr14	77878031	77879031	+	681.5	f1_c57bl6.idr	Intergenic	Intergenic	-3614.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	70.0	234.0	99.0	25.5	56.5	24.0
Merged-chr5-117881335-2	chr5	117880835	117881835	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 2 of 27)	intron (NM_008712, intron 2 of 27)	14496.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-101762514-2	chr10	101762014	101763014	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205098, intron 1 of 7)	RMER17B2|LTR|ERVK	-10178.0	NR_037211	100526516.0		NR_037211	ENSMUSG00000092952	Mir3059	mir-3059|mmu-mir-3059	microRNA 3059	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56164538-2	chr17	56164038	56165038	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025566, intron 1 of 1)	intron (NM_025566, intron 1 of 1)	2047.0	NM_025566	66443.0	Mm.2312	NM_025566	ENSMUSG00000044469	Tnfaip8l1	2600017J23Rik|TIPE1	tumor necrosis factor, alpha-induced protein 8-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73593736-2	chr15	73593236	73594236	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357747, intron 2 of 7)	intron (NM_001357747, intron 2 of 7)	2790.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64208147-2	chr5	64207647	64208647	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-22210.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-79887163-3	chr7	79886675	79887675	+	681.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009682, intron 4 of 5)	L1M7|LINE|L1	33465.0	NM_009682	11778.0	Mm.220173	NM_009682	ENSMUSG00000063801	Ap3s2	[s]3B	adaptor-related protein complex 3, sigma 2 subunit	protein-coding	0.0	0.0	0.0	3.0	0.0	0.0
Merged-chr2-19635966-2	chr2	19635466	19636466	+	681.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	21931.0	NR_033642	100041244.0	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49972387-2	chr16	49971887	49972887	+	681.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-8073.0	NR_045001	628951.0	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46843647-2	chr8	46843147	46844147	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 6 of 7)	intron (NR_152560, intron 6 of 7)	103902.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30760745-2	chr14	30760245	30761245	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166531, intron 2 of 21)	intron (NM_001166531, intron 2 of 21)	45130.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	16.0	17.0	29.0	8.5	30.5	31.5
Merged-chr1-87211718-2	chr1	87211218	87212218	+	681.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009604, exon 12 of 12)	3' UTR (NM_009604, exon 12 of 12)	-2193.0	NM_001347083	26987.0	Mm.227183	NM_023314	ENSMUSG00000026254	Eif4e2	2700069E09Rik|AI036339|AV129531|D0H0S6743E|Eif4el3	eukaryotic translation initiation factor 4E member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100526104-2	chr11	100525604	100526604	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134037, intron 1 of 27)	intron (NM_134037, intron 1 of 27)	1896.0	NM_134037	104112.0	Mm.282039	NM_134037	ENSMUSG00000020917	Acly	A730098H14Rik|AW538652	ATP citrate lyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-36772147-2	chr3	36771647	36772647	+	681.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81980.0	NM_019510	22065.0	Mm.74363	NM_019510	ENSMUSG00000027716	Trpc3	Mwk|Trcp3|Trp3|Trrp3	transient receptor potential cation channel, subfamily C, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-66450921-2	chr8	66450421	66451421	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 6 of 7)	intron (NM_175188, intron 6 of 7)	35609.0	NM_025465	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0.0	0.0	4.5	5.5	0.0	3.5
Merged-chr6-22424283-2	chr6	22423783	22424783	+	681.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68202.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81502170-2	chr10	81501670	81502670	+	681.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010304)	TTS (NM_010304)	-2033.0	NM_010102	13611.0	Mm.33065	NM_010102	ENSMUSG00000044199	S1pr4	Edg6|Lpc1|S1p4	sphingosine-1-phosphate receptor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34930591-2	chr17	34930091	34931091	+	681.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010893)	promoter-TSS (NM_010893)	-662.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81917785-2	chr15	81917285	81918285	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030229, intron 4 of 5)	intron (NM_030229, intron 4 of 5)	8428.0	NM_030229	78929.0	Mm.215115	NM_030229	ENSMUSG00000022476	Polr3h	5031409G22Rik|RPC8	polymerase (RNA) III (DNA directed) polypeptide H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78286166-2	chr10	78285666	78286666	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053014, intron 3 of 9)	intron (NM_053014, intron 3 of 9)	-41524.0	NM_001081055	216131.0	Mm.27539	NM_001081055	ENSMUSG00000000374	Trappc10	B230307C21Rik|Gm870|Tmem1|b2b2416Clo|b2b2613Clo	trafficking protein particle complex 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57634367-2	chr16	57633880	57634880	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007739, intron 2 of 3)	intron (NM_007739, intron 2 of 3)	-27513.0	NM_025599	66497.0	Mm.425976	NM_025599	ENSMUSG00000022748	Cmss1	1110001A06Rik|2610528E23Rik|4930572F24Rik|AV099812|AV122629	cms small ribosomal subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-121079423-2	chr7	121078923	121079923	+	681.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-4015.0	NM_139310	246190.0	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30891261-2	chr2	30890761	30891761	+	681.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_022415, exon 3 of 3)	3' UTR (NM_022415, exon 3 of 3)	12036.0	NM_022415	64292.0	Mm.28768	NM_022415	ENSMUSG00000050737	Ptges	2410099E23Rik|D2Ertd369e|Pges|mPGES|mPGES-1	prostaglandin E synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43919363-2	chr7	43918863	43919863	+	681.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14408.0	NM_174865	317652.0	Mm.389896	NM_174865	ENSMUSG00000055193	Klk15	-	kallikrein related-peptidase 15	protein-coding	0.0	3.0	2.0	5.0	0.0	0.0
Merged-chr7-141453129-2	chr7	141452629	141453629	+	681.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-2059.0	NM_025802	66853.0	Mm.29998	NM_025802	ENSMUSG00000025509	Pnpla2	0610039C21Rik|1110001C14Rik|Atgl|TTS-2.2	patatin-like phospholipase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-117021160-2	chr13	117020660	117021660	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	4356.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32894455-4	chr18	32893959	32894959	+	681.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13786.0	NR_105779	102465186.0		NR_105779	ENSMUSG00000098252	Mir6361	Gm27612|mmu-mir-6361	microRNA 6361	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6352002-2	chr4	6351487	6352487	+	681.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	FordPrefect|DNA|hAT-Tip100	-13693.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0.0	0.0	5.0	0.0	0.0	4.5
Merged-chr9-37028919-2	chr9	37028419	37029419	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 2 of 12)	intron (NM_001029838, intron 2 of 12)	118403.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-40899144-2	chr18	40898644	40899644	+	681.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	640783.0	NM_026135	383348.0	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr5-139399535-2	chr5	139399035	139400035	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	-6852.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57033726-2	chr17	57033226	57034226	+	681.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_175333, exon 6 of 7)	exon (NM_175333, exon 6 of 7)	-2219.0	NM_010613	16549.0	Mm.34296	NM_010613	ENSMUSG00000007670	Khsrp	6330409F21Rik|Fbp2|Fubp2|Ksrp	KH-type splicing regulatory protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46947570-3	chr18	46947082	46948082	+	681.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11294.0	NM_178377	69456.0	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2|Tg(Vav1-icre)A2Kio|Vav-cre|Vav-iCre|Vav1-Cre|VavCre	COMM domain containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121105687-2	chr8	121105187	121106187	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172761, intron 3 of 7)	intron (NM_172761, intron 3 of 7)	2692.0	NM_172761	234814.0	Mm.31690	NM_172761	ENSMUSG00000031816	Mthfsd	AW049977|BC052066|C920004D05	methenyltetrahydrofolate synthetase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-119818930-2	chr1	119818430	119819430	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019933, intron 1 of 26)	ID_B1|SINE|B4	18141.0	NM_019933	19258.0	Mm.458796	NM_019933	ENSMUSG00000026384	Ptpn4	PTPMEG|Ptn4|TEP|TEP/mPTPMEG|hPTP-MEG	protein tyrosine phosphatase, non-receptor type 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149308824-2	chr4	149308324	149309324	+	681.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1091.0	NM_001290995	16561.0	Mm.402393	NM_008441	ENSMUSG00000063077	Kif1b	A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204	kinesin family member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81250047-2	chr10	81249547	81250547	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034895, intron 16 of 17)	intron (NM_001034895, intron 16 of 17)	-2888.0	NM_001285855	17179.0	Mm.2918	NM_010768	ENSMUSG00000004933	Matk	CHK|HYL|Ntk|p56ntk	megakaryocyte-associated tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111410834-2	chr13	111410334	111411334	+	681.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79293.0	NM_028487	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88201630-2	chr15	88201068	88202068	+	681.5	f0_balb.idr|f1_balb.idr	Intergenic	RSINE1|SINE|B4	-113306.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56165260-2	chr17	56164760	56165760	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025566, intron 1 of 1)	PB1D7|SINE|Alu	2769.0	NM_025566	66443.0	Mm.2312	NM_025566	ENSMUSG00000044469	Tnfaip8l1	2600017J23Rik|TIPE1	tumor necrosis factor, alpha-induced protein 8-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8306709-6	chr12	8306266	8307266	+	681.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4812.0	NM_013527	238057.0	Mm.271308	NM_013527	ENSMUSG00000037660	Gdf7	BMP12	growth differentiation factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-95315717-3	chr1	95315210	95316210	+	681.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026321, intron 1 of 2)	MER113|DNA|hAT-Charlie	2082.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120779666-3	chr5	120779101	120780101	+	681.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1942.0	NM_145226	246727.0	Mm.204887	NM_145226	ENSMUSG00000032661	Oas3	Oasl10	2'-5' oligoadenylate synthetase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16397876-2	chr7	16397376	16398376	+	681.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTC)n|Simple_repeat|Simple_repeat	-3320.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3309718-3	chr8	3309190	3310190	+	681.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44B|LTR|ERVK	-30073.0	NM_001330056	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29469207-2	chr6	29468707	29469707	+	681.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_025381, intron 1 of 1)	intron (NM_025381, intron 1 of 1)	1424.0	NM_025381	66144.0	Mm.371614	NM_025381	ENSMUSG00000004285	Atp6v1f	1110004G16Rik	ATPase, H+ transporting, lysosomal V1 subunit F	protein-coding	2.0	5.0	1.0	0.0	4.0	1.0
Merged-chr6-39264865-3	chr6	39264371	39265371	+	681.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58098.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-20674693-3	chr5	20674199	20675199	+	681.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 22 of 22)	intron (NM_001170746, intron 22 of 22)	207425.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95533087-4	chr10	95532574	95533574	+	681.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080560, intron 1 of 3)	RLTR17|LTR|ERVK	17912.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62252314-3	chr15	62251807	62252807	+	681.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132747, intron 4 of 4)	intron (NR_132747, intron 4 of 4)	-32856.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	1.5	1.0	1.0	0.5	4.5	7.5
Merged-chr3-90709691-2	chr3	90709191	90710191	+	681.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13970.0	NM_001281852	20202.0	Mm.2128	NM_009114	ENSMUSG00000056071	S100a9	60B8Ag|AW546964|BEE22|Cagb|GAGB|L1Ag|MRP14|p14	S100 calcium binding protein A9 (calgranulin B)	protein-coding	0.0	2.5	1.5	0.0	0.0	0.5
Merged-chr16-10483817-2	chr16	10483317	10484317	+	681.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243760, intron 1 of 18)	intron (NM_001243760, intron 1 of 18)	3745.0	NM_001302618	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-25261351-2	chr18	25260851	25261851	+	681.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033532, intron 5 of 10)	RMER5|LTR|ERV1	92331.0	NM_001033532	225289.0	Mm.391081	NM_001033532	ENSMUSG00000033632	AW554918	4921538P22|AI461742|Kiaa1328|mKIAA1328	expressed sequence AW554918	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40351195-2	chr10	40350695	40351695	+	681.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291816, intron 1 of 11)	intron (NM_001291816, intron 1 of 11)	1887.0	NM_001291816	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-59194168-3	chr19	59193613	59194613	+	681.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-24084.0	NM_009501	22326.0	Mm.23801	NM_009501	ENSMUSG00000006270	Vax1	-	ventral anterior homeobox 1	protein-coding	2.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65818749-4	chr3	65818252	65819252	+	681.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166659, intron 11 of 12)	intron (NM_001166659, intron 11 of 12)	139497.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	6.5	4.0	0.5	6.0	2.0	4.5
Merged-chr13-44696273-3	chr13	44695758	44696758	+	681.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34516.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88495910-2	chr3	88495410	88496410	+	681.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002011, intron 1 of 11)	intron (NM_001002011, intron 1 of 11)	-2598.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-66436651-2	chr8	66436151	66437151	+	681.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 6 of 7)	intron (NM_175188, intron 6 of 7)	49879.0	NM_025465	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-50828992-2	chr1	50828492	50829492	+	681.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98531.0	NM_019790	56363.0	Mm.245154	NM_019790	ENSMUSG00000026109	Tmeff2	4832418D20Rik|7630402F16Rik|TR-2	transmembrane protein with EGF-like and two follistatin-like domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5389774-3	chr19	5389243	5390243	+	681.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033224, exon 1 of 1)	non-coding (NR_033224, exon 1 of 1)	-1040.0	NM_016882	20227.0	Mm.34562	NM_016882	ENSMUSG00000039148	Sart1	U5-110K	squamous cell carcinoma antigen recognized by T cells 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3499422-3	chr2	3498935	3499935	+	681.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015765, intron 6 of 13)	intron (NM_015765, intron 6 of 13)	13379.0	NR_103465	50497.0	Mm.89341	NM_015765	ENSMUSG00000051396	Hspa14	70kDa|HSP70L1|Hsp70-4|NST-1|hsr.1	heat shock protein 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45097689-4	chr4	45097174	45098174	+	681.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10439.0	NM_001134646	68512.0	Mm.282081	NM_001099675	ENSMUSG00000078713	Tomm5	1110019J04Rik|Tom5	translocase of outer mitochondrial membrane 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-60975425-2	chr1	60974919	60975919	+	681.06665	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2495.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	21.5	20.0	11.0	16.0	28.5	15.5
Merged-chr8-19705267-2	chr8	19704766	19705766	+	681.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-24310.0	NM_001270553	100861668.0	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114081739-1	chr7	114081239	114082239	+	681.0	f0_c57.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	36042.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115142693-2	chr11	115142193	115143193	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163753, intron 1 of 8)	intron (NM_001163753, intron 1 of 8)	-8701.0	NM_145634	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167502495-2	chr2	167501995	167502995	+	681.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360930)	promoter-TSS (NM_001360930)	-948.0	NR_153838	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25225597-2	chr8	25225097	25226097	+	681.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	-24055.0	NM_177089	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-92215051-2	chr15	92214551	92215551	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358051, intron 3 of 25)	intron (NM_001358051, intron 3 of 25)	53694.0	NM_001159647	12805.0	Mm.4911	NM_007727	ENSMUSG00000055022	Cntn1	AW495098|CNTN|F3cam|usl	contactin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-74192796-3	chr13	74192298	74193298	+	681.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177333, exon 4 of 13)	exon (NM_177333, exon 4 of 13)	15902.0	NM_177333	211446.0	Mm.261859	NM_177333	ENSMUSG00000034152	Exoc3	2810050O03Rik|E430013E20Rik|Sec6|Sec6l1	exocyst complex component 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80558503-2	chr10	80558003	80559003	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025852, intron 1 of 14)	intron (NM_025852, intron 1 of 14)	3057.0	NM_025852	66932.0	Mm.1116	NM_025852	ENSMUSG00000047417	Rexo1	1700021P10Rik|2610511M11Rik|AW050347|EloA-BP1|Rex1|Tceb3bp1	REX1, RNA exonuclease 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107888569-2	chr9	107888069	107889069	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028369, intron 1 of 5)	intron (NM_028369, intron 1 of 5)	440.0	NM_028369	72825.0	Mm.38037	NM_028369	ENSMUSG00000032583	Mon1a	2810468K17Rik	MON1 homolog A, secretory traffciking associated	protein-coding	10.0	12.5	13.5	9.0	5.5	8.5
Merged-chr15-6656291-2	chr15	6655774	6656774	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011815, intron 15 of 17)	L1_Mus4|LINE|L1	-1971.0	NR_155272	102632231.0	Mm.444780	NR_155272		LOC102632231	-	uncharacterized LOC102632231	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98794906-2	chr15	98794406	98795406	+	681.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5049.0	NM_021279	22408.0	Mm.1123	NM_021279	ENSMUSG00000022997	Wnt1	Int-1|Wnt-1|sw|swaying	wingless-type MMTV integration site family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113652436-2	chr5	113651936	113652936	+	681.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2046.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35460715-2	chr2	35460215	35461215	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	734.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37231446-2	chr10	37230946	37231946	+	681.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92520.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21638853-2	chr16	21638353	21639353	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 45 of 46)	intron (NM_001081366, intron 45 of 46)	55812.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-39274428-2	chr4	39273928	39274928	+	681.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-175865.0	NM_001081095	75471.0	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding	2.0	7.0	1.5	5.0	0.0	0.0
Merged-chr17-87154621-1	chr17	87154121	87155121	+	681.0	f0_balb.idr	Intergenic	L1MEf|LINE|L1	40321.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	21.0	8.5	14.0	109.0	107.0	118.0
Merged-chr18-38187381-2	chr18	38186881	38187881	+	681.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22381.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138327382-1	chr4	138326882	138327882	+	681.0	f0_c57.idr	Intergenic	RMER19B|LTR|ERVK	-1086.0	NM_026880	68943.0	Mm.18539	NM_026880	ENSMUSG00000028756	Pink1	1190006F07Rik|AU042772|AW557854|BRPK|mFLJ00387	PTEN induced putative kinase 1	protein-coding	2.0	3.0	2.0	0.0	0.0	6.0
Merged-chr13-63356844-2	chr13	63356350	63357350	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007985, intron 6 of 14)	intron (NM_007985, intron 6 of 14)	-55567.0	NR_037235	100526474.0		NR_037235	ENSMUSG00000092741	Mir3074-1	mmu-mir-3074-1	microRNA 3074-1	ncRNA	0.0	1.0	2.0	2.0	1.0	0.0
Merged-chr13-24613626-2	chr13	24613126	24614126	+	681.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286101)	promoter-TSS (NM_001286101)	-980.0	NM_001286101	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-40237811-2	chr1	40237311	40238311	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008362, intron 1 of 10)	B4A|SINE|B4	12731.0	NM_008362	16177.0	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92442126-2	chr16	92441626	92442626	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	24043.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74788814-4	chr1	74788296	74789296	+	681.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3223.0	NM_009518	22409.0	Mm.5130	NM_009518	ENSMUSG00000026167	Wnt10a	-	wingless-type MMTV integration site family, member 10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122029237-3	chr14	122028741	122029741	+	681.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5433.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135488264-2	chr7	135487764	135488764	+	681.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40390.0	NM_178669	212070.0	Mm.39721	NM_178669	ENSMUSG00000050866	Clrn3	AI649392|Tmem12	clarin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29378134-1	chr17	29377634	29378634	+	681.0	f1_c57bl6.idr	intron (NM_001159538, intron 14 of 15)	ID_B1|SINE|B4	17220.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	6.0	22.5	19.0	16.5	7.5	11.0
Merged-chr13-37880734-1	chr13	37880234	37881234	+	681.0	f0_balb.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	-7700.0	NR_033218	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-115152465-2	chr13	115151965	115152965	+	681.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5A|LINE|L1	-50501.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78399902-3	chr11	78399430	78400430	+	681.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022411, intron 9 of 11)	intron (NM_022411, intron 9 of 11)	5445.0	NR_003282	790911.0	Mm.457257	NR_003282	ENSMUSG00000085747	Slc13a2os	Gm11194	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138178110-1	chr4	138177610	138178610	+	681.0	f0_balb.idr	intron (NM_001355699, intron 22 of 32)	intron (NM_001355699, intron 22 of 32)	14901.0	NR_105825	102466907.0		NR_105825	ENSMUSG00000098513	Mir6399	Gm27667|mir-6399|mmu-mir-6399	microRNA 6399	ncRNA	1.5	0.0	10.5	9.0	0.5	15.5
Merged-chr2-172344850-2	chr2	172344350	172345350	+	681.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025912)	promoter-TSS (NM_025912)	-727.0	NM_025912	67017.0	Mm.30013	NM_025912	ENSMUSG00000027495	Fam210b	2010011I20Rik|AI430961|AV108736	family with sequence similarity 210, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-56374752-1	chr10	56374252	56375252	+	681.0	f0_balb.idr	Intergenic	Intergenic	-2548.0	NM_010288	14609.0	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44764718-1	chr16	44764218	44765218	+	681.0	f0_balb.idr	Intergenic	Intergenic	-1018.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5789270-2	chr19	5788770	5789770	+	681.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	6711.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79399948-2	chr8	79399448	79400448	+	681.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008539)	promoter-TSS (NM_008539)	-480.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73488184-2	chr2	73487684	73488684	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-2431.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91487061-3	chr16	91486575	91487575	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010508, intron 1 of 10)	ORR1A1|LTR|ERVL-MaLR	1860.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84719798-2	chr2	84719298	84720298	+	681.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4634.0	NM_144887	228136.0	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	1.5	6.0	0.0	1.5	6.0	0.0
Merged-chr7-63998185-2	chr7	63997685	63998685	+	681.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59270.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107179352-1	chr4	107178852	107179852	+	681.0	f0_balb.idr	promoter-TSS (NM_025617)	promoter-TSS (NM_025617)	722.0	NM_029565	56374.0	Mm.291192	NM_029565	ENSMUSG00000028618	Tmem59	1110001M20Rik|3110046P06Rik|AI256529|D4Ertd20e|MTDCF1|ORF18	transmembrane protein 59	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37784420-3	chr13	37783924	37784924	+	681.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41614.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124533283-2	chr5	124532783	124533783	+	681.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1892.0	NM_021430	75695.0	Mm.41180	NM_021430	ENSMUSG00000029392	Rilpl1	2900002H16Rik|6330559I19Rik|GOSPEL	Rab interacting lysosomal protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-99171517-2	chr11	99171017	99172017	+	681.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16440.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22853557-1	chr11	22853057	22854057	+	681.0	f0_balb.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	6178.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146647518-1	chr6	146647018	146648018	+	681.0	f1_balb.idr	non-coding (NR_038089, exon 1 of 1)	non-coding (NR_038089, exon 1 of 1)	284.0	NR_038089	626175.0	Mm.391544	NM_001178001		Gm6654	EG626175	predicted pseudogene 6654	pseudo	3.0	3.5	2.0	1.0	0.0	1.0
Merged-chr1-51911407-1	chr1	51910907	51911907	+	681.0	f0_balb.idr	intron (NM_010863, intron 1 of 29)	intron (NM_010863, intron 1 of 29)	4571.0	NM_001161817	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	1.0	2.0	0.0	1.0	1.0	0.0
Merged-chr6-39129612-2	chr6	39129112	39130112	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045813, intron 1 of 3)	L1VL4|LINE|L1	11139.0	NR_045813	75379.0	Mm.348014	NR_045813	ENSMUSG00000073144	4930599N23Rik	-	RIKEN cDNA 4930599N23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-3326781-2	chr17	3326281	3327281	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122998, intron 1 of 26)	CpG	208.0	NM_001122998	24001.0	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35750957-1	chr18	35750457	35751457	+	681.0	f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-10403.0	NM_001289592	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135169931-2	chr5	135169431	135170431	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009745, intron 1 of 5)	intron (NM_009745, intron 1 of 5)	1559.0	NM_009745	12054.0	Mm.405834	NM_009745	ENSMUSG00000029681	Bcl7b	-	B cell CLL/lymphoma 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73280869-2	chr2	73280369	73281369	+	681.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8943.0	NM_001005343	381373.0	Mm.330293	NM_001005343	ENSMUSG00000068859	Sp9	-	trans-acting transcription factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62221652-2	chr11	62221152	62222152	+	681.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001281818, exon 15 of 15)	3' UTR (NM_001281818, exon 15 of 15)	-27332.0	NM_007413	11541.0	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9107585-2	chr19	9107060	9108060	+	681.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19604.0	NM_011681	22287.0	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	1.0	0.0	0.0	1.5	0.0	1.0
Merged-chr17-17386354-1	chr17	17385854	17386854	+	681.0	f0_balb.idr	intron (NM_025934, intron 7 of 9)	MTD|LTR|ERVL-MaLR	12022.0	NM_025934	67045.0	Mm.35117	NM_025934	ENSMUSG00000023852	Riok2	2010110K24Rik|2410085M17Rik	RIO kinase 2	protein-coding	20.0	28.5	2.0	13.0	17.5	6.0
Merged-chr1-39608679-1	chr1	39608179	39609179	+	681.0	f0_balb.idr	Intergenic	Intergenic	-31332.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133415109-2	chr4	133414624	133415624	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016981, intron 2 of 11)	intron (NM_016981, intron 2 of 11)	45348.0	NR_039582	100628620.0		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	2.0	0.0	0.0	2.0	0.0	2.0
Merged-chr3-52066461-1	chr3	52065961	52066961	+	681.0	f0_balb.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	38545.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53779770-1	chr19	53779270	53780270	+	681.0	f1_c57bl6.idr	intron (NM_001170847, intron 1 of 13)	intron (NM_001170847, intron 1 of 13)	102464.0	NM_001170847	73713.0	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	2.5	0.0	3.0	0.0	0.0	0.0
Merged-chr8-24823588-2	chr8	24823088	24824088	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001272057, intron 1 of 18)	intron (NM_001272057, intron 1 of 18)	781.0	NM_001272058	11499.0	Mm.143889	NM_007401	ENSMUSG00000031554	Adam5	tMDC II|tMDCII	a disintegrin and metallopeptidase domain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166066960-2	chr2	166066460	166067460	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 18 of 22)	intron (NM_008679, intron 18 of 22)	74323.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103100651-2	chr14	103100151	103101151	+	681.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1085.0	NM_001360342	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35188788-1	chr17	35188288	35189288	+	681.0	f1_balb.idr	promoter-TSS (NM_010734)	promoter-TSS (NM_010734)	-348.0	NM_010734	16988.0	Mm.19379	NM_010734	ENSMUSG00000073412	Lst1	B144	leukocyte specific transcript 1	protein-coding	88.0	171.0	97.0	66.0	176.5	87.5
Merged-chr1-191098793-1	chr1	191098293	191099293	+	681.0	f0_c57.idr	intron (NM_030060, intron 1 of 2)	intron (NM_030060, intron 1 of 2)	379.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	27.5	52.0	28.0	33.0	54.5	35.5
Merged-chr16-63063198-1	chr16	63062698	63063698	+	681.0	f1_c57bl6.idr	Intergenic	RMER13A2|LTR|ERVK	208891.0	NM_011173	19128.0	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	2.0	3.0	0.0	0.5	0.0	0.0
Merged-chr8-94367586-2	chr8	94367086	94368086	+	681.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-18843.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-148326241-1	chr3	148325741	148326741	+	681.0	f1_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	628394.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	1.0	0.0	18.5	21.0	1.0	15.0
Merged-chr2-94465925-2	chr2	94465425	94466425	+	681.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27739.0	NM_001349003	11800.0	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59808608-2	chr11	59808108	59809108	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_073164, intron 1 of 12)	intron (NR_073164, intron 1 of 12)	993.0	NM_001271357	216805.0	Mm.339640	NM_146018	ENSMUSG00000032633	Flcn	AU014660|B430214A04Rik|Bhd|FLCL	folliculin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75465648-2	chr11	75465148	75466148	+	681.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030711, exon 3 of 3)	non-coding (NR_030711, exon 3 of 3)	1932.0	NR_029739	387141.0		NR_029739	ENSMUSG00000065529	Mir22	Mirn22|mmu-mir-22	microRNA 22	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71044308-3	chr2	71043812	71044812	+	680.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 1 of 9)	intron (NM_145524, intron 1 of 9)	11294.0	NM_145524	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124607948-3	chr2	124607502	124608502	+	680.916687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-2294.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-43634225-3	chr11	43633751	43634751	+	680.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32689.0	NM_008375	16204.0	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	7.5	1.5	5.0	1.0	2.5	1.0
Merged-chr2-27401729-3	chr2	27401223	27402223	+	680.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009500, intron 1 of 27)	ORR1A2-int|LTR|ERVL-MaLR	25885.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-72654923-2	chr12	72654423	72655423	+	680.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025522, intron 4 of 6)	B3|SINE|B2	9905.0	NM_025522	66375.0	Mm.289653	NM_025522	ENSMUSG00000021094	Dhrs7	2310016E22Rik|5730564L20Rik|AW061210|Retdsr4|Retsdr4	dehydrogenase/reductase (SDR family) member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-5577953-2	chr15	5577453	5578453	+	680.833313	f1_balb.idr|f1_c57bl6.idr	intron (NR_045274, intron 2 of 4)	MLT1A|LTR|ERVL-MaLR	81635.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38871919-2	chr6	38871419	38872419	+	680.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 1 of 14)	intron (NM_010433, intron 1 of 14)	4271.0	NM_010433	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-37660012-3	chr3	37659481	37660481	+	680.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20034.0	NM_011896	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101081254-3	chr15	101080755	101081755	+	680.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26856.0	NM_001214911	668225.0	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	6.0	12.0	13.5	1.0	17.0	17.0
Merged-chr7-47023305-2	chr7	47022814	47023814	+	680.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-14900.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84684155-2	chr17	84683655	84684655	+	680.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347418, intron 1 of 12)	intron (NM_001347418, intron 1 of 12)	1034.0	NM_026180	67470.0	Mm.26581	NM_026180	ENSMUSG00000024254	Abcg8	1300003C16Rik|AI114946|sterolin-2	ATP binding cassette subfamily G member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103486375-2	chr14	103485875	103486875	+	680.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-26966.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23979527-4	chr11	23979024	23980024	+	680.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84254.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	1.0	0.0	1.0	0.0	0.0	1.0
Merged-chr5-75150231-2	chr5	75149731	75150731	+	680.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2020.0	NR_144636	18595.0	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-84975437-2	chr4	84974910	84975910	+	680.7023929999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_175275, intron 7 of 25)	Lx8b|LINE|L1	91101.0	NM_177385	338349.0	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	9.5	1.0	1.5	2.5	0.5	1.5
Merged-chr7-16843870-3	chr7	16843370	16844370	+	680.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_178900, intron 1 of 17)	intron (NM_178900, intron 1 of 17)	805.0	NM_178900	101540.0	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	0.0	0.0	0.5	3.0	3.0	2.5
Merged-chr7-67305120-3	chr7	67304634	67305634	+	680.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 3 of 11)	intron (NM_001357324, intron 3 of 11)	67724.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35894451-3	chr12	35893941	35894941	+	680.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31180.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	5.5	11.0	3.0	0.5	2.0	2.0
Merged-chr10-121961601-3	chr10	121961123	121962123	+	680.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081037, intron 1 of 21)	intron (NM_001081037, intron 1 of 21)	85692.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90710498-3	chr16	90710012	90711012	+	680.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16859.0	NM_025642	66578.0	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-44284569-3	chr5	44284048	44285048	+	680.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57942.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	0.0	0.0	0.0	0.0	0.0	3.5
Merged-chr9-106643343-3	chr9	106642822	106643822	+	680.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12787.0	NM_001160353	108068.0	Mm.410822	NM_001160353	ENSMUSG00000023192	Grm2	4930441L02Rik|Gprc1b|mGluR2|mGluR7	glutamate receptor, metabotropic 2	protein-coding	0.0	3.0	0.0	0.0	0.0	0.0
Merged-chr11-100300480-2	chr11	100299980	100300980	+	680.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-19469.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102223250-2	chr11	102222750	102223750	+	680.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001284248, intron 2 of 28)	intron (NM_001284248, intron 2 of 28)	6900.0	NR_106179	102465892.0		NR_106179	ENSMUSG00000098863	Mir8101	Gm27705|mmu-mir-8101	microRNA 8101	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80427139-2	chr7	80426654	80427654	+	680.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-21718.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	50.5	129.0	64.0	43.0	96.0	77.0
Merged-chr1-65046541-2	chr1	65046041	65047041	+	680.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4622.0	NM_007777	12968.0	Mm.258170	NM_007777	ENSMUSG00000070870	Cryge	Cryg-2|Cryg-6|DGcry-2|Elo	crystallin, gamma E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167004642-2	chr2	167004141	167005141	+	680.666626	f0_balb.idr|f0_c57.idr	Intergenic	B3|SINE|B2	-8342.0	NM_001109905	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128132226-2	chr10	128131726	128132726	+	680.625	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019711, exon 13 of 13)	3' UTR (NM_019711, exon 13 of 13)	39443.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86548473-3	chr4	86547982	86548982	+	680.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081096, intron 1 of 3)	intron (NM_001081096, intron 1 of 3)	9821.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116323673-3	chr7	116323122	116324122	+	680.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10568.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-59220666-3	chr3	59220192	59221192	+	680.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357010, intron 1 of 3)	intron (NM_001357010, intron 1 of 3)	-9810.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	24.5	0.5	4.0	5.0	0.5	4.0
Merged-chr14-121919975-3	chr14	121919484	121920484	+	680.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 4 of 8)	intron (NM_026861, intron 4 of 8)	-4210.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	0.5	11.0	7.0	8.5	2.5	1.5
Merged-chr10-19956145-3	chr10	19955639	19956639	+	680.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 1 of 29)	URR1B|DNA|hAT-Charlie	21613.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	7.0	13.5	5.5	2.5	24.5	17.5
Merged-chr4-119950410-3	chr4	119949905	119950905	+	680.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	135727.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	0.0	0.0	3.5	0.0	4.0	1.0
Merged-chr17-33961677-2	chr17	33961177	33962177	+	680.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357330, exon 12 of 20)	exon (NM_001357330, exon 12 of 20)	5587.0	NM_001357329	224705.0	Mm.448614	NM_172620	ENSMUSG00000024319	Vps52	ARE1|D130068D18|D430041K17Rik|SAC2|Sacm2l|tclw5	VPS52 GARP complex subunit	protein-coding	0.0	8.5	3.0	2.5	0.0	0.5
Merged-chr11-114886357-2	chr11	114885857	114886857	+	680.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3684.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120007699-2	chr11	120007199	120008199	+	680.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001037755)	TTS (NM_001037755)	-7068.0	NR_037225	100526518.0		NR_037225	ENSMUSG00000105524	Mir3065	mir-3065|mmu-mir-3065	microRNA 3065	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-137404874-2	chr7	137404374	137405374	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029886, intron 1 of 3)	RMER5|LTR|ERV1	5882.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-63643663-2	chr13	63643163	63644163	+	680.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70203.0	NM_001328514	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	0.5	0.5	6.5	0.5	5.0	0.5
Merged-chr6-21999043-2	chr6	21998543	21999543	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081351, intron 1 of 21)	intron (NM_001081351, intron 1 of 21)	13133.0	NM_001081351	214642.0	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11006115-2	chr4	11005615	11006615	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175175, intron 1 of 1)	intron (NM_175175, intron 1 of 1)	1504.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	3.5	9.0	7.5	1.0	7.5	4.5
Merged-chr11-83645506-2	chr11	83645006	83646006	+	680.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3872.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118502350-2	chr11	118501850	118502850	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285437, intron 7 of 13)	intron (NM_001285437, intron 7 of 13)	25518.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-96156855-2	chr6	96156355	96157355	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_182808, intron 2 of 4)	Lx8|LINE|L1	9350.0	NR_003643	78482.0	Mm.391486	NM_030107	ENSMUSG00000072878	1700123L14Rik	-	nucleoporin 50 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-102317172-2	chr8	102316672	102317672	+	680.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	467939.0	NM_009866	12552.0	Mm.1571	NM_009866	ENSMUSG00000031673	Cdh11	Cad11|OSF-4	cadherin 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70599301-2	chr8	70598791	70599791	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133772, intron 9 of 16)	MER5B|DNA|hAT-Charlie	4810.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	6.0	0.0	3.5	6.5	0.0	6.0
Merged-chr15-63615372-2	chr15	63614872	63615872	+	680.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-135764.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	3.5	5.0	12.0	1.5	3.0	4.0
Merged-chr12-78747583-3	chr12	78747102	78748102	+	680.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1345.0	NM_019579	56217.0	Mm.425777	NM_019579	ENSMUSG00000021112	Mpp5	3830420B02Rik|AI255216|AI644496|Pals1	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)	protein-coding	0.0	2.5	0.0	0.0	0.0	1.5
Merged-chr2-135424613-2	chr2	135424113	135425113	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019677, intron 32 of 32)	MTC|LTR|ERVL-MaLR	158607.0	NR_015544	320684.0	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139280151-2	chr5	139279651	139280651	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 5 of 10)	intron (NM_172723, intron 5 of 10)	26654.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88537563-2	chr3	88537063	88538063	+	680.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001029890, exon 2 of 2)	3' UTR (NM_001029890, exon 2 of 2)	-1181.0	NR_035434	100316808.0		NR_035434	ENSMUSG00000084728	Mir1905	Mirn1905|mmu-mir-1905	microRNA 1905	ncRNA	0.0	0.0	0.0	0.5	0.0	2.5
Merged-chr4-123527716-2	chr4	123527216	123528216	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 5 of 92)	intron (NM_001199137, intron 5 of 92)	-88704.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87663062-2	chr17	87662562	87663562	+	680.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MuRRS4-int|LTR|ERV1	-9495.0	NM_008628	17685.0	Mm.4619	NM_008628	ENSMUSG00000024151	Msh2	AI788990	mutS homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-105815442-1	chr14	105814942	105815942	+	680.5	f0_balb.idr	Intergenic	Intergenic	81377.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84192541-2	chr17	84192041	84193041	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 37 of 37)	intron (NM_183021, intron 37 of 37)	-4594.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66164746-2	chr5	66164246	66165246	+	680.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12792.0	NM_001127382	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	1.5	4.5	5.5	0.5	0.0	0.0
Merged-chr12-82489251-2	chr12	82488751	82489751	+	680.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127674.0	NM_001310478	50779.0	Mm.126176	NM_015812	ENSMUSG00000021219	Rgs6	-	regulator of G-protein signaling 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-102898945-2	chr13	102898445	102899445	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	138690.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36623428-2	chr5	36622928	36623928	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081232, intron 3 of 8)	intron (NM_001081232, intron 3 of 8)	-37202.0	NM_001113362	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0.0	2.0	1.0	0.0	2.0	0.0
Merged-chr3-87946746-2	chr3	87946246	87947246	+	680.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1947.0	NM_007759	12904.0	Mm.4757	NM_007759	ENSMUSG00000004885	Crabp2	AI893628|Crabp-2|CrabpII	cellular retinoic acid binding protein II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87653922-2	chr1	87653422	87654422	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	33610.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30416925-2	chr2	30416425	30417425	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138748, intron 1 of 9)	intron (NM_138748, intron 1 of 9)	875.0	NM_138748	110854.0	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114348513-3	chr6	114348035	114349035	+	680.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49401.0	NM_001317125	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75189682-2	chr11	75189182	75190182	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144491, intron 1 of 12)	intron (NM_144491, intron 1 of 12)	801.0	NM_144491	116905.0	Mm.41496	NM_144491	ENSMUSG00000078789	Dph1	2310011M22Rik|4930488F09Rik|AW551873|Dph2l1|Ovca1	diphthamide biosynthesis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr13-94972755-2	chr13	94972255	94973255	+	680.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-3589.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-54396212-2	chr16	54395712	54396712	+	680.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	887025.0	NM_178720	239852.0	Mm.245045	NM_178720	ENSMUSG00000064310	Zpld1	9430016A21Rik	zona pellucida like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40746444-2	chr19	40745944	40746944	+	680.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84835.0	NM_172839	240665.0	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105260700-2	chr8	105260200	105261200	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033161, intron 1 of 4)	intron (NM_001033161, intron 1 of 4)	3894.0	NM_001033161	71609.0	Mm.264255	NM_001033161	ENSMUSG00000031887	Tradd	9130005N23Rik|AA930854	TNFRSF1A-associated via death domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-59183976-2	chr16	59183456	59184456	+	680.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	2525.0	NM_146484	258477.0	Mm.377523	NM_146484	ENSMUSG00000109020	Olfr197	MOR183-3	olfactory receptor 197	protein-coding	0.5	1.0	0.0	0.0	3.0	0.0
Merged-chr17-3448143-2	chr17	3447643	3448643	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011878, intron 9 of 26)	intron (NM_011878, intron 9 of 26)	-34172.0	NM_001286758	24001.0	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	0.0	0.5	0.5	0.0	0.0	0.5
Merged-chr13-116509240-2	chr13	116508740	116509740	+	680.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-199552.0	NM_021459	16392.0	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57557546-2	chr16	57556971	57557971	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	8229.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	31.0	39.0	36.5	29.0	58.0	48.0
Merged-chr16-91860096-2	chr16	91859596	91860596	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 24 of 28)	intron (NM_001110275, intron 24 of 28)	71534.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69425219-2	chr11	69424719	69425719	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 77 of 85)	intron (NM_001081330, intron 77 of 85)	-11544.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150652126-2	chr4	150651626	150652626	+	680.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173774)	promoter-TSS (NM_173774)	48.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-17733250-2	chr11	17732753	17733753	+	680.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	220622.0	NM_026576	68145.0	Mm.178684	NM_026576	ENSMUSG00000016984	Etaa1	5730466H23Rik|AA672646	Ewing tumor-associated antigen 1	protein-coding	10.0	1.0	17.0	1.0	1.5	3.0
Merged-chr15-102990988-2	chr15	102990488	102991488	+	680.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010466, exon 1 of 2)	exon (NM_010466, exon 1 of 2)	449.0	NM_010466	15426.0	Mm.6167	NM_010466	ENSMUSG00000001657	Hoxc8	D130011F21Rik|Hox-3.1	homeobox C8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62834197-2	chr4	62833697	62834697	+	680.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-131377.0	NM_028326	72701.0	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49713593-1	chr11	49713093	49714093	+	680.5	f0_balb.idr	promoter-TSS (NM_212484)	promoter-TSS (NM_212484)	-871.0	NM_212484	104625.0	Mm.247113	NM_212484	ENSMUSG00000020362	Cnot6	CCR4	CCR4-NOT transcription complex, subunit 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65706038-2	chr18	65705538	65706538	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177028, intron 1 of 14)	intron (NM_177028, intron 1 of 14)	7770.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	0.0	0.0	0.0	2.5	0.0	0.0
Merged-chr6-56716306-2	chr6	56715806	56716806	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030235, intron 1 of 15)	intron (NM_030235, intron 1 of 15)	1401.0	NM_030235	78937.0	Mm.105343	NM_030235	ENSMUSG00000029787	Avl9	5830411G16Rik|D730049P16Rik|mKIAA0241	AVL9 cell migration associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-107820261-2	chr5	107819761	107820761	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007964, intron 4 of 17)	intron (NM_007964, intron 4 of 17)	-9901.0	NM_001276397	73318.0	Mm.441500	NM_028502	ENSMUSG00000063447	Ube2d2b	1700013N18Rik	ubiquitin-conjugating enzyme E2D 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57448837-2	chr17	57448337	57449337	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 16 of 22)	B4A|SINE|B4	90151.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-60600525-2	chr9	60600025	60601025	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311095, intron 13 of 15)	intron (NM_001311095, intron 13 of 15)	-54643.0	NR_040463	100504561.0	Mm.410770	NR_040463	ENSMUSG00000111761	9230112J17Rik	-	RIKEN cDNA 9230112J17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135270692-2	chr4	135270207	135271207	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	PB1D7|SINE|Alu	2053.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36466779-2	chr18	36466279	36467279	+	680.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-12284.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	0.0	0.0	0.5	0.0	2.0	0.0
Merged-chr3-158034159-2	chr3	158033659	158034659	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001093752, intron 1 of 12)	intron (NM_001093752, intron 1 of 12)	-2387.0	NM_001093753	69207.0	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18172664-2	chr16	18172164	18173164	+	680.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7494.0	NR_105785	102465189.0		NR_105785	ENSMUSG00000099293	Mir6366	Gm27720|mmu-mir-6366	microRNA 6366	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-114898930-3	chr9	114898440	114899440	+	680.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175380)	TTS (NM_175380)	35047.0	NM_175380	333433.0	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	2.5	12.0	0.0	0.0	6.5	0.0
Merged-chr3-103773017-2	chr3	103772517	103773517	+	680.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_010432, intron 2 of 15)	intron (NM_010432, intron 2 of 15)	18258.0	NM_001301306	15257.0	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	3.0	21.5	14.5	17.5	18.5	20.0
Merged-chr14-41033550-4	chr14	41033040	41034040	+	680.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19707.0	NM_001316737	70564.0	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62865393-4	chr10	62864887	62865887	+	680.354187	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253857, intron 2 of 12)	intron (NM_001253857, intron 2 of 12)	21937.0	NM_001253857	52463.0	Mm.17774	NM_027384	ENSMUSG00000047146	Tet1	2510010B09Rik|AA517754|BB001228|Cxxc6|D10Ertd17e|LCX|mKIAA1676	tet methylcytosine dioxygenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94560123-2	chr13	94559623	94560623	+	680.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009680, intron 26 of 26)	intron (NM_009680, intron 26 of 26)	201163.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44984480-2	chr7	44983980	44984980	+	680.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_045521, intron 1 of 11)	intron (NR_045521, intron 1 of 11)	1940.0	NM_001252476	15469.0	Mm.27545	NM_019830	ENSMUSG00000109324	Prmt1	6720434D09Rik|AW214366|Hrmt1l2|Mrmt1	protein arginine N-methyltransferase 1	protein-coding	0.0	3.5	5.0	2.0	1.0	2.0
Merged-chr13-35740334-3	chr13	35739846	35740846	+	680.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009881, intron 3 of 9)	intron (NM_009881, intron 3 of 9)	-1056.0	NM_001123386	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60360925-3	chr10	60360426	60361426	+	680.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028732, intron 3 of 6)	intron (NM_028732, intron 3 of 6)	14075.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108895113-3	chr8	108894638	108895638	+	680.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 4 of 9)	intron (NM_007496, intron 4 of 9)	-41722.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69443466-3	chr11	69442961	69443961	+	680.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 63 of 85)	B1F2|SINE|Alu	-29786.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-99939473-4	chr13	99938970	99939970	+	680.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LFSINE_Vert|SINE|tRNA	-38787.0	NM_001081493	27220.0	Mm.75498	NM_013732	ENSMUSG00000021647	Cartpt	Cart	CART prepropeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-6470785-2	chr18	6470278	6471278	+	680.25	f0_balb.idr|f1_balb.idr	intron (NM_007935, intron 1 of 13)	intron (NM_007935, intron 1 of 13)	19868.0	NR_035446	100316773.0		NR_035446	ENSMUSG00000084514	Mir1893	Mirn1893|mmu-mir-1893	microRNA 1893	ncRNA	5.5	24.0	8.0	5.5	30.5	23.5
Merged-chr17-34945084-2	chr17	34944584	34945584	+	680.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	5924.0	NR_028527	100217427.0		NR_028527	ENSMUSG00000093009	Snord52	MBII-297	small nucleolar RNA, C/D box 52	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43475870-2	chr7	43475370	43476370	+	680.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164518, intron 7 of 7)	intron (NM_001164518, intron 7 of 7)	12637.0	NM_001290316	75690.0	Mm.30200	NM_001290316	ENSMUSG00000070604	Vsig10l	-	V-set and immunoglobulin domain containing 10 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-57957751-3	chr18	57957206	57958206	+	680.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79028.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	1.5	0.0	0.5	1.5	0.0	0.5
Merged-chr17-27837321-2	chr17	27836821	27837821	+	680.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2766.0	NM_011432	20630.0	Mm.103949	NM_011432	ENSMUSG00000024217	Snrpc	Snrp1c|U1-C|U1C	U1 small nuclear ribonucleoprotein C	protein-coding	2.5	1.0	1.0	0.0	8.5	0.5
Merged-chr9-6168520-2	chr9	6168020	6169020	+	680.166687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027924)	promoter-TSS (NM_027924)	34.0	NM_001357397	71785.0	Mm.390122	NM_027924	ENSMUSG00000032006	Pdgfd	1110003I09Rik	platelet-derived growth factor, D polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-8997108-2	chr13	8996608	8997608	+	680.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1096.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126244323-2	chr7	126243823	126244823	+	680.166687	f1_balb.idr|f1_c57bl6.idr	intron (NR_131046, intron 1 of 4)	MTEb|LTR|ERVL-MaLR	3915.0	NR_131046	76728.0	Mm.76920	NR_131046	ENSMUSG00000108676	1700123J17Rik	Gm44875	RIKEN cDNA 1700123J17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99139135-3	chr9	99138631	99139631	+	680.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 1 of 23)	intron (NM_029094, intron 1 of 23)	1080.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11352103-2	chr19	11351603	11352603	+	680.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15957.0	NM_027836	109225.0	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64724080-2	chr17	64723580	64724580	+	680.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 16 of 21)	intron (NM_008549, intron 16 of 21)	-43031.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-51559032-2	chr6	51558532	51559532	+	680.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361577, intron 1 of 6)	B2_Mm2|SINE|B2	13739.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-26760599-4	chr10	26760105	26761105	+	680.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11907.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112635397-2	chr13	112634897	112635897	+	680.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145885, intron 5 of 21)	intron (NM_001145885, intron 5 of 21)	16913.0	NM_010029	13206.0	Mm.12818	NM_010029	ENSMUSG00000021758	Ddx4	AV206478|Mvh|VASA	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-8499532-3	chr8	8499036	8500036	+	680.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161237.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-67723377-3	chr14	67722890	67723890	+	680.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111028, intron 1 of 11)	ORR1D1|LTR|ERVL-MaLR	7292.0	NM_001285933	105440.0	Mm.6720	NM_134073	ENSMUSG00000034327	Kctd9	-	potassium channel tetramerisation domain containing 9	protein-coding	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr14-19759939-3	chr14	19759441	19760441	+	680.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008695, intron 2 of 20)	intron (NM_008695, intron 2 of 20)	8684.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63108058-2	chr14	63107558	63108558	+	680.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14404.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39778141-3	chr6	39777614	39778614	+	680.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32822.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55235613-3	chr19	55235180	55236180	+	680.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 2 of 20)	intron (NM_001081076, intron 2 of 20)	5556.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47142553-3	chr19	47142005	47143005	+	680.083313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081271, intron 1 of 1)	intron (NM_001081271, intron 1 of 1)	1669.0	NM_001081271	546729.0	Mm.439624	NM_001081271	ENSMUSG00000079258	Calhm1	EG546729	calcium homeostasis modulator 1	protein-coding	7.5	16.0	6.5	1.0	0.0	1.5
Merged-chr2-148533907-4	chr2	148533405	148534405	+	680.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90370.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58247862-2	chr15	58247362	58248362	+	680.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32970.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-63422383-2	chr10	63421883	63422883	+	680.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-7715.0	NM_177612	216033.0	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111999287-2	chr10	111998787	111999787	+	680.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	-2023.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-5142961-2	chr12	5142461	5143461	+	680.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164493, intron 3 of 13)	intron (NM_001164493, intron 3 of 13)	225608.0	NM_001362349	320817.0	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65795526-3	chr18	65795019	65796019	+	680.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5059.0	NM_025468	66286.0	Mm.27800	NM_025468	ENSMUSG00000024516	Sec11c	1810029G24Rik|Sec11l3	SEC11 homolog C, signal peptidase complex subunit	protein-coding	2.0	0.5	0.5	0.0	0.5	0.5
Merged-chr2-83689596-2	chr2	83689096	83690096	+	680.0	f0_balb.idr|f0_c57.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-34801.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	2.0	7.0	8.5	2.0	8.0	2.5
Merged-chr16-93823158-1	chr16	93822658	93823658	+	680.0	f1_balb.idr	Intergenic	Intergenic	-8963.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	1.0	0.0	4.5	2.0	0.0	0.0
Merged-chr10-79703887-2	chr10	79703387	79704387	+	680.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009768)	promoter-TSS (NM_009768)	-471.0	NM_001077184	12215.0	Mm.726	NM_009768	ENSMUSG00000023175	Bsg	AI115436|AI325119|CD147|EMMPRIN|HT-7	basigin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13502829-2	chr8	13502329	13503329	+	680.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8294.0	NM_019521	14456.0	Mm.3982	NM_019521	ENSMUSG00000031451	Gas6	Gas-6	growth arrest specific 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11145240-1	chr4	11144740	11145740	+	680.0	f0_balb.idr	Intergenic	Intergenic	11143.0	NR_030455	735261.0		NR_030455	ENSMUSG00000105333	Mir684-2	Mirn684-2	microRNA 684-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75772820-3	chr2	75772317	75773317	+	680.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59360.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	29.0	44.0	21.5	20.5	21.0	14.5
Merged-chr10-121501416-2	chr10	121500916	121501916	+	680.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER58A|DNA|hAT-Charlie	-25166.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	3.5	0.0	0.5	0.0	0.5	0.5
Merged-chr8-71527283-3	chr8	71526727	71527727	+	680.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10210.0	NM_198095	69550.0	Mm.260325	NM_198095	ENSMUSG00000046718	Bst2	2310015I10Rik|Bst-2|C87040|CD317|DAMP-1|GREG	bone marrow stromal cell antigen 2	protein-coding	10.0	12.5	14.5	4.5	0.0	0.0
Merged-chr17-66078505-2	chr17	66078005	66079005	+	680.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001278415)	TTS (NM_001278415)	-1459.0	NM_001025572	106585.0	Mm.34706	NM_001025572	ENSMUSG00000034647	Ankrd12	2900001A12Rik|AI447928|ANCO-2|AV347965|GAC-1|mKIAA0874	ankyrin repeat domain 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23953214-2	chr13	23952714	23953714	+	680.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145399)	TTS (NM_145399)	18752.0	NM_175658	319163.0	Mm.377876	NM_175658	ENSMUSG00000060081	Hist1h2aa	Th2a	histone cluster 1, H2aa	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87504854-2	chr3	87504350	87505350	+	680.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20728.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	3.5	8.0	4.5	0.0	4.5	1.0
Merged-chr6-24155086-1	chr6	24154586	24155586	+	680.0	f0_balb.idr	intron (NM_019481, intron 1 of 14)	B4A|SINE|B4	13006.0	NM_019481	55961.0	Mm.19299	NM_019481	ENSMUSG00000029700	Slc13a1	AI314066|AI987826|NaSi-1|Nas1	solute carrier family 13 (sodium/sulfate symporters), member 1	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr10-79747709-2	chr10	79747168	79748168	+	680.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	(CAGA)n|Simple_repeat|Simple_repeat	-1087.0	NM_172551	216151.0	Mm.39001	NM_172551	ENSMUSG00000020329	Polrmt	1110018N15Rik|4932416K13	polymerase (RNA) mitochondrial (DNA directed)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102404517-1	chr12	102404017	102405017	+	680.0	f1_c57bl6.idr	intron (NM_011175, intron 4 of 13)	intron (NM_011175, intron 4 of 13)	35296.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	10.0	46.5	23.5	4.5	14.5	24.0
Merged-chr8-11163644-1	chr8	11163144	11164144	+	680.0	f0_balb.idr	Intergenic	Intergenic	-149161.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34144919-1	chr17	34144419	34145419	+	680.0	f1_c57bl6.idr	promoter-TSS (NM_010388)	promoter-TSS (NM_010388)	-497.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	14.0	24.5	5.5	3.5	8.0	14.0
Merged-chr6-88903449-1	chr6	88902949	88903949	+	680.0	f0_balb.idr	intron (NM_011906, intron 1 of 11)	intron (NM_011906, intron 1 of 11)	1198.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5259124-1	chr6	5258624	5259624	+	680.0	f1_balb.idr	Intergenic	IAP-d-int|LTR|ERVK	-2891.0	NM_173006	269823.0	Mm.9122	NM_173006	ENSMUSG00000029759	Pon3	2810004E20|AI786302	paraoxonase 3	protein-coding	11.5	18.0	9.0	14.0	9.5	3.0
Merged-chr14-51176423-2	chr14	51175923	51176923	+	680.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14163.0	NM_019398	54159.0	Mm.377125	NM_019398	ENSMUSG00000059606	Rnase2b	Ear5|Raf4|mR5	ribonuclease, RNase A family, 2B (liver, eosinophil-derived neurotoxin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-128735-1	chr1	128235	129235	+	680.0	f1_c57bl6.idr	Intergenic	Intergenic	3542763.0	NM_001011874	497097.0	Mm.454496	NM_001011874	ENSMUSG00000051951	Xkr4	AY534250|Gm210|XRG4|mKIAA1889	X-linked Kx blood group related 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-23033559-2	chr15	23033059	23034059	+	680.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-2904.0	NM_001081299	320865.0	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l|Tg(GFAP-APOE_i4)1Hol	cadherin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108997290-2	chr9	108996790	108997790	+	680.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 1 of 13)	intron (NR_153430, intron 1 of 13)	5388.0	NR_153430	270198.0	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45080804-2	chr7	45080304	45081304	+	680.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	11409.0	NM_026555	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	0.0	0.0	5.5	7.5	4.5	8.0
Merged-chr18-50098003-1	chr18	50097503	50098503	+	680.0	f1_c57bl6.idr	Intergenic	Intergenic	-30198.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	51.0	103.5	76.0	15.0	13.5	5.0
Merged-chr15-98917224-2	chr15	98916724	98917724	+	680.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029098, intron 1 of 16)	intron (NM_029098, intron 1 of 16)	874.0	NM_029098	74775.0	Mm.385020	NM_029098	ENSMUSG00000022999	Lmbr1l	1110013E13Rik|AA415653|D15Ertd735e|Limr	limb region 1 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52499491-2	chr3	52498991	52499991	+	680.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17473.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-77252705-1	chr5	77252205	77253205	+	680.0	f0_c57.idr	Intergenic	Lx8|LINE|L1	-12789.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-49685860-2	chr19	49685360	49686360	+	680.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	992786.0	NM_001252501	58178.0	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180891484-1	chr2	180890984	180891984	+	680.0	f1_balb.idr	Intergenic	Intergenic	-2556.0	NR_029538	723951.0		NR_029538	ENSMUSG00000065454	Mir124a-3	Mirn124a-3|mir-124-3|mir-124a-3	microRNA 124a-3	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91187038-1	chr1	91186538	91187538	+	680.0	f1_balb.idr	intron (NM_001168392, intron 1 of 3)	ORR1F|LTR|ERVL-MaLR	7216.0	NM_001168392	51801.0	Mm.3272	NM_016894	ENSMUSG00000034353	Ramp1	9130218E19Rik	receptor (calcitonin) activity modifying protein 1	protein-coding	0.0	1.5	0.5	6.0	0.0	2.5
Merged-chr1-85758178-1	chr1	85757678	85758678	+	680.0	f0_balb.idr	Intergenic	Intergenic	6230.0	NR_106172	102466882.0		NR_106172	ENSMUSG00000098634	Mir8096	Gm27479|mmu-mir-8096	microRNA 8096	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-23386012-1	chr5	23385512	23386512	+	680.0	f1_c57bl6.idr	Intergenic	Intergenic	48341.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	4.5	1.0	6.0	4.0	0.0	0.5
Merged-chr4-155089599-2	chr4	155089099	155090099	+	680.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356327, intron 3 of 12)	intron (NM_001356327, intron 3 of 12)	2995.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55089022-1	chr1	55088522	55089522	+	680.0	f1_balb.idr	promoter-TSS (NM_001356512)	promoter-TSS (NM_001356512)	-779.0	NM_001356512	15510.0	Mm.1777	NM_010477	ENSMUSG00000025980	Hspd1	60kDa|CPN60|HSP-60|HSP-65|Hsp60	heat shock protein 1 (chaperonin)	protein-coding	2.0	45.5	20.5	3.5	8.5	9.5
Merged-chr2-32079586-2	chr2	32079086	32080086	+	680.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151493, intron 2 of 5)	intron (NR_151493, intron 2 of 5)	4119.0	NM_175511	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89475188-2	chr15	89474688	89475688	+	680.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009713, exon 3 of 9)	exon (NM_009713, exon 3 of 9)	-1064.0	NR_077233	100532730.0	Mm.461541	NR_077233		C230037L18Rik	-	RIKEN cDNA C230037L18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84347592-2	chr17	84347092	84348092	+	680.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 26 of 37)	MTD|LTR|ERVL-MaLR	118616.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64133639-1	chr15	64133139	64134139	+	680.0	f1_balb.idr	intron (NM_001276461, intron 15 of 28)	intron (NM_001276461, intron 15 of 28)	-73191.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	1.0	5.5	9.5	1.0	7.5	4.5
Merged-chr11-8565219-1	chr11	8564719	8565719	+	680.0	f1_c57bl6.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	99316.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	7.5	12.0	6.5	9.5	7.0	13.5
Merged-chr4-129056971-3	chr4	129056463	129057463	+	680.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-1308.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56711396-2	chr17	56710896	56711896	+	680.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045519, exon 17 of 17)	non-coding (NR_045519, exon 17 of 17)	5525.0	NM_178926	106639.0	Mm.37290	NM_178926	ENSMUSG00000054723	Vmac	AI662250	vimentin-type intermediate filament associated coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35168203-2	chr7	35167703	35168703	+	680.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18182.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr5-53199811-2	chr5	53199311	53200311	+	680.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172710, intron 2 of 23)	intron (NM_172710, intron 2 of 23)	13641.0	NM_172710	231238.0	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25080461-1	chr8	25079961	25080961	+	680.0	f0_balb.idr	intron (NM_031257, intron 2 of 11)	ORR1D1-int|LTR|ERVL-MaLR	21350.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65789170-1	chr18	65788670	65789670	+	680.0	f1_c57bl6.idr	Intergenic	Intergenic	-11408.0	NM_025468	66286.0	Mm.27800	NM_025468	ENSMUSG00000024516	Sec11c	1810029G24Rik|Sec11l3	SEC11 homolog C, signal peptidase complex subunit	protein-coding	1.5	0.0	2.5	0.5	1.5	1.0
Merged-chr1-131050239-1	chr1	131049739	131050739	+	680.0	f0_c57.idr	Intergenic	Intergenic	30394.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	1.5	1.0	1.5	1.5	3.5	1.0
Merged-chr12-100929927-2	chr12	100929427	100930427	+	680.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026681, intron 24 of 29)	intron (NM_026681, intron 24 of 29)	-21729.0	NM_001177673	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-88523721-2	chr18	88523221	88524221	+	680.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	370486.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3064149-1	chr4	3063649	3064649	+	680.0	f1_balb.idr	Intergenic	Intergenic	-107934.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91311400-2	chr12	91310900	91311900	+	680.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181815, intron 10 of 25)	intron (NM_181815, intron 10 of 25)	73009.0	NM_181815	75216.0	Mm.312204	NM_181815	ENSMUSG00000061533	Cep128	4930534B04Rik|5430424K18Rik|AI449708|AI480494|E230024F20	centrosomal protein 128	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-33629802-1	chr8	33629302	33630302	+	680.0	f0_balb.idr	intron (NM_178648, intron 4 of 7)	intron (NM_178648, intron 4 of 7)	12174.0	NM_178648	108159.0	Mm.29301	NM_178648	ENSMUSG00000052906	Ubxn8	D0H8S2298E|Rep-8|Rep8h|Ubxd6	UBX domain protein 8	protein-coding	3.5	2.5	4.0	11.0	11.5	10.5
Merged-chr13-102745391-1	chr13	102744891	102745891	+	680.0	f1_c57bl6.idr	intron (NM_175171, intron 26 of 28)	intron (NM_175171, intron 26 of 28)	-14864.0	NR_130318	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	3.5	2.0	1.0	2.0	2.0	1.0
Merged-chr2-162661604-2	chr2	162661104	162662104	+	680.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021464)	promoter-TSS (NM_021464)	441.0	NR_033569	77288.0	Mm.376571	NR_033569		9430021M05Rik	-	RIKEN cDNA 9430021M05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-8100826-2	chr14	8100326	8101326	+	680.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	MIRb|SINE|MIR	2615.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163734968-2	chr2	163734468	163735468	+	680.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001272052, intron 3 of 11)	intron (NM_001272052, intron 3 of 11)	15271.0	NM_007398	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-62277950-2	chr14	62277450	62278450	+	680.0	f0_balb.idr|f0_c57.idr	intron (NM_173419, intron 1 of 1)	intron (NM_173419, intron 1 of 1)	15029.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-151771283-3	chr3	151770793	151771793	+	680.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	-8402.0	NM_031367	15061.0	Mm.219544	NM_031367	ENSMUSG00000039146	Ifi44l	H-28|H28|H28-1|NS1178	interferon-induced protein 44 like	protein-coding	0.0	0.0	1.5	7.0	4.0	0.0
Merged-chr4-102651605-1	chr4	102651105	102652105	+	680.0	f1_balb.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	61762.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	6.0	0.0	0.5	0.0	1.5	0.0
Merged-chr1-105622858-1	chr1	105622358	105623358	+	680.0	f0_balb.idr	intron (NM_013784, intron 14 of 30)	L1MA4A|LINE|L1	40818.0	NM_013784	27392.0	Mm.268911	NM_013784	ENSMUSG00000056536	Pign	Gm20308|PIG-N	phosphatidylinositol glycan anchor biosynthesis, class N	protein-coding	6.0	8.5	5.0	1.0	3.0	5.0
Merged-chr7-16617171-2	chr7	16616671	16617671	+	680.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_136929, intron 1 of 2)	B3|SINE|B2	-2178.0	NM_172739	232906.0	Mm.28646	NM_172739	ENSMUSG00000058230	Arhgap35	6430596G11Rik|AI841135|Grlf1|mKIAA1722|p190A|p190RhoGAP	Rho GTPase activating protein 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55831314-2	chr19	55830814	55831814	+	680.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-64007.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82823861-2	chr18	82823361	82824361	+	680.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32036.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34060193-4	chr11	34059682	34060682	+	679.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 3 of 20)	intron (NM_010696, intron 3 of 20)	13254.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81129040-3	chr13	81128559	81129559	+	679.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	L1MA6|LINE|L1	164985.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87553801-3	chr6	87553330	87554330	+	679.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20571.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184035981-2	chr1	184035481	184036481	+	679.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_022019, intron 1 of 3)	intron (NM_022019, intron 1 of 3)	1600.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	4.0	0.5	0.5	4.0	0.5	0.5
Merged-chr1-160919593-2	chr1	160919080	160920080	+	679.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024952, intron 1 of 19)	intron (NM_001024952, intron 1 of 19)	13169.0	NM_001024952	381305.0	Mm.329667	NM_001024952	ENSMUSG00000040423	Rc3h1	5730557L09Rik|Gm551|N28103|mKIAA2025	RING CCCH (C3H) domains 1	protein-coding	15.5	34.5	24.0	32.5	36.5	41.5
Merged-chr13-111945753-2	chr13	111945253	111946253	+	679.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77817.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132799895-3	chr7	132799399	132800399	+	679.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	-12964.0	NM_175268	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-7579322-2	chr18	7578822	7579822	+	679.8000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360860, intron 1 of 17)	intron (NM_001360860, intron 1 of 17)	28832.0	NM_001360860	75739.0	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	2.5	0.0	1.0	1.5	0.0	0.0
Merged-chr9-88406065-4	chr9	88405586	88406586	+	679.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359958, intron 8 of 28)	MER5A1|DNA|hAT-Charlie	32865.0	NM_001359958	244962.0	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding	18.5	3.0	6.0	8.5	0.0	4.0
Merged-chr16-88478231-4	chr16	88477719	88478719	+	679.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28759.0	NM_181490	239931.0	Mm.126860	NM_181490	ENSMUSG00000055811	Cldn17	-	claudin 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116206550-2	chr3	116206050	116207050	+	679.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46934.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-113289392-4	chr7	113288883	113289883	+	679.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357070, intron 9 of 19)	L3|LINE|CR1	79956.0	NM_133700	68815.0	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43112741-5	chr13	43112203	43113203	+	679.700012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005740, intron 8 of 12)	intron (NM_001005740, intron 8 of 12)	-10136.0	NM_001005748	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	2.5	0.0	1.0	0.0	3.5	6.0
Merged-chr2-157259924-3	chr2	157259424	157260424	+	679.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039557, intron 4 of 24)	intron (NM_001039557, intron 4 of 24)	-19174.0	NM_001355163	20014.0	Mm.22130	NM_019642	ENSMUSG00000027642	Rpn2	1300012C06Rik|AV261018|Rpn-2	ribophorin II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139001909-2	chr5	139001409	139002409	+	679.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6956.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-72117984-3	chr1	72117454	72118454	+	679.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94353.0	NM_001005423	381269.0	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-33719378-1	chr18	33718878	33719878	+	679.666687	f0_c57.idr	Intergenic	Intergenic	-75514.0	NR_038152	69749.0	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	14.0	17.5	16.5	6.0	0.0	5.0
Merged-chr14-75173250-2	chr14	75172750	75173750	+	679.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	36825.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95881592-2	chr13	95881099	95882099	+	679.666626	f0_balb.idr|f1_balb.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	10323.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	13.0	10.0	7.5	23.0	20.0	13.0
Merged-chr14-31437453-2	chr14	31436953	31437953	+	679.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1353.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126814528-2	chr8	126814028	126815028	+	679.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34492.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-116967364-2	chr8	116966864	116967864	+	679.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	11289.0	NM_001357254	69528.0	Mm.272846	NM_027103	ENSMUSG00000031847	1700030J22Rik	-	RIKEN cDNA 1700030J22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94147011-2	chr10	94146444	94147444	+	679.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011629)	promoter-TSS (NM_011629)	-987.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	1.5	4.5	17.5	0.0	16.0	11.5
Merged-chr13-103974180-3	chr13	103973685	103974685	+	679.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53599.0	NM_001005868	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34995149-2	chr17	34994650	34995650	+	679.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV-int|LTR|ERVK	5596.0	NM_033075	110956.0	Mm.22506	NM_033075		D17H6S56E-5	G7e	DNA segment, Chr 17, human D6S56E 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-141012108-3	chr2	141011604	141012604	+	679.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 4 of 18)	intron (NM_001013802, intron 4 of 18)	-340628.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105055817-3	chr3	105055338	105056338	+	679.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-2692.0	NM_030249	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148530041-2	chr2	148529541	148530541	+	679.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86506.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	8.0	31.5	11.5	13.5	18.0	18.0
Merged-chr4-149163328-2	chr4	149162828	149163828	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081274, intron 3 of 12)	RLTR12B|LTR|ERVK	2754.0	NM_001356332	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91816884-2	chr16	91816384	91817384	+	679.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010587, exon 11 of 39)	exon (NM_010587, exon 11 of 39)	87513.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5275185-2	chr17	5274685	5275685	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 6 of 19)	intron (NM_001085355, intron 6 of 19)	143582.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63108601-2	chr9	63108101	63109101	+	679.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	38379.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79886839-2	chr3	79886339	79887339	+	679.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133187, exon 1 of 4)	exon (NM_133187, exon 1 of 4)	909.0	NM_133187	68659.0	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40132484-2	chr10	40131984	40132984	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	9770.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90743377-2	chr16	90742877	90743877	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029844, intron 1 of 2)	PB1|SINE|Alu	5053.0	NM_029844	77037.0	Mm.22455	NM_029844	ENSMUSG00000039956	Mrap	1110025G12Rik|C21ORF61|Falp|ORF61	melanocortin 2 receptor accessory protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62682673-2	chr4	62682173	62683173	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310706, intron 1 of 6)	intron (NM_001310706, intron 1 of 6)	8699.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-64725008-2	chr2	64724508	64725508	+	679.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	297758.0	NM_016719	50915.0	Mm.214554	NM_016719	ENSMUSG00000026888	Grb14	AI505286	growth factor receptor bound protein 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-105911784-2	chr11	105911284	105912284	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181071, intron 20 of 25)	intron (NM_181071, intron 20 of 25)	32703.0	NM_007805	13056.0	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122020803-2	chr14	122020303	122021303	+	679.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026861, exon 9 of 9)	3' UTR (NM_026861, exon 9 of 9)	-13871.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70869677-2	chr9	70869177	70870177	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	65131.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77519221-3	chr11	77518723	77519723	+	679.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026185, exon 2 of 2)	3' UTR (NM_026185, exon 2 of 2)	4106.0	NM_026185	67477.0	Mm.432526	NM_026185	ENSMUSG00000000686	Abhd15	1300007F04Rik	abhydrolase domain containing 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-124659402-2	chr4	124658902	124659902	+	679.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011141, exon 1 of 1)	3' UTR (NM_011141, exon 1 of 1)	1756.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-162933404-2	chr2	162932904	162933904	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026499, intron 2 of 5)	intron (NM_026499, intron 2 of 5)	1896.0	NM_026499	67996.0	Mm.24042	NM_026499	ENSMUSG00000016921	Srsf6	1210001E11Rik|AI314910|AW146126|Sfrs6	serine/arginine-rich splicing factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64061858-2	chr15	64061358	64062358	+	679.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-1410.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78163523-2	chr10	78163023	78164023	+	679.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_138601, exon 6 of 7)	exon (NM_138601, exon 6 of 7)	6245.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180941176-2	chr1	180940676	180941676	+	679.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1342.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-130074087-2	chr3	130073587	130074587	+	679.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(ATG)n|Simple_repeat|Simple_repeat	-13180.0	NM_207209	99683.0	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-82208288-2	chr12	82207788	82208788	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 1 of 23)	intron (NM_001167983, intron 1 of 23)	38272.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-5127742-2	chr7	5127242	5128242	+	679.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1792.0	NM_009028	19428.0	Mm.322186	NM_009028	ENSMUSG00000083649	Rasl2-9	M2|Ran|Ran/M2|Rasl2-9-ps	RAS-like, family 2, locus 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-18937977-2	chr8	18937477	18938477	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176951, intron 5 of 6)	MER67B|LTR|ERV1	12894.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70411396-2	chr11	70410896	70411896	+	679.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1365.0	NM_029231	75273.0	Mm.340601	NM_029231	ENSMUSG00000018921	Pelp1	4930563C04Rik|MNAR	proline, glutamic acid and leucine rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91286236-2	chr2	91285736	91286736	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175123, intron 4 of 8)	Lx|LINE|L1	21121.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	0.0	1.0	0.5	0.0	5.0	2.0
Merged-chr9-7835024-2	chr9	7834524	7835524	+	679.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001291503, exon 2 of 8)	5' UTR (NM_001291503, exon 2 of 8)	1782.0	NM_001291503	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32632506-2	chr2	32632006	32633006	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198791, intron 5 of 6)	intron (NM_001198791, intron 5 of 6)	3006.0	NM_021515	11636.0	Mm.29189	NM_021515	ENSMUSG00000026817	Ak1	Ak-1|B430205N08Rik	adenylate kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-52976114-2	chr19	52975614	52976614	+	679.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34642.0	NR_105834	102465220.0		NR_105834	ENSMUSG00000098730	Mir6407	Gm27832|mmu-mir-6407	microRNA 6407	ncRNA	0.0	6.5	0.0	0.0	6.5	0.0
Merged-chr2-129572299-2	chr2	129571796	129572796	+	679.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20543.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	17.0	30.5	28.5	3.0	17.0	15.5
Merged-chr1-191093427-2	chr1	191092927	191093927	+	679.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4987.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	57.5	81.5	98.0	45.0	97.5	83.5
Merged-chr11-102478340-2	chr11	102477840	102478840	+	679.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001159492, exon 8 of 8)	exon (NM_001159492, exon 8 of 8)	-8457.0	NM_010575	16399.0	Mm.26646	NM_010575	ENSMUSG00000034664	Itga2b	AI172977|CD41|CD41B|GpIIb|alphaIIb	integrin alpha 2b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128030943-2	chr10	128030443	128031443	+	679.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008921)	TTS (NM_008921)	-4403.0	NM_013608	17938.0	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11189860-2	chr2	11189360	11190360	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	17478.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31847534-2	chr17	31847034	31848034	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010831, intron 12 of 13)	intron (NM_010831, intron 12 of 13)	8270.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102284319-2	chr11	102283819	102284819	+	679.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302506)	promoter-TSS (NM_001302506)	-501.0	NM_001302506	72053.0	Mm.101274	NM_028076	ENSMUSG00000034757	Tmub2	2010008E23Rik	transmembrane and ubiquitin-like domain containing 2	protein-coding	1.0	1.0	0.0	10.5	9.5	3.0
Merged-chr18-61216512-2	chr18	61216011	61217011	+	679.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3988.0	NM_146086	225600.0	Mm.391106	NM_146086	ENSMUSG00000024575	Pde6a	Pdea|nmf282	phosphodiesterase 6A, cGMP-specific, rod, alpha	protein-coding	5.5	5.5	5.5	7.5	17.0	9.5
Merged-chr7-17021770-2	chr7	17021270	17022270	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011155, intron 2 of 12)	intron (NM_011155, intron 2 of 12)	6144.0	NM_011155	19060.0	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	0.0	1.5	1.0	3.5	0.0	0.5
Merged-chr6-43010641-2	chr6	43010141	43011141	+	679.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	55141.0	NM_146656	258650.0	Mm.377613	NM_146656	ENSMUSG00000073110	Olfr444	MOR261-2	olfactory receptor 444	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27274001-2	chr2	27273501	27274501	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 22 of 29)	intron (NR_133905, intron 22 of 29)	-26698.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40823575-2	chr12	40823075	40824075	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 42 of 52)	Lx8|LINE|L1	-200515.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87913645-2	chr3	87913145	87914145	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008231, intron 3 of 5)	intron (NM_008231, intron 3 of 5)	-5899.0	NM_026591	67707.0	Mm.393802	NM_026591	ENSMUSG00000019710	Mrpl24	2010005E08Rik|2810470K06Rik|6720473G22Rik|AA407670	mitochondrial ribosomal protein L24	protein-coding	3.0	0.0	1.0	0.0	0.0	0.5
Merged-chr13-48528298-2	chr13	48527798	48528798	+	679.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7816.0	NR_029656	387247.0		NR_029656	ENSMUSG00000065453	Mirlet7d	Mirnlet7d|let-7d|mmu-let-7d	microRNA let7d	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3485621-2	chr5	3485121	3486121	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	RMER19B|LTR|ERVK	-58212.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-62842142-2	chr14	62841642	62842642	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	4421.0	NR_106174	102465889.0		NR_106174	ENSMUSG00000099245	Mir8098	Gm27462|mmu-mir-8098	microRNA 8098	ncRNA	0.0	8.0	7.0	3.0	17.5	9.0
Merged-chr4-6441996-4	chr4	6441534	6442534	+	679.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 1 of 30)	intron (NM_010945, intron 1 of 30)	12237.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109371327-2	chr11	109370827	109371827	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010303, intron 2 of 3)	intron (NM_010303, intron 2 of 3)	-7673.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135354231-2	chr4	135353731	135354731	+	679.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-1017.0	NM_001130477	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88244274-2	chr7	88243784	88244784	+	679.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33801.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	10.0	17.5	7.5	19.0	15.0	15.5
Merged-chr10-62493177-2	chr10	62492677	62493677	+	679.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011157)	TTS (NM_011157)	-6372.0	NM_001358543	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58822526-1	chr15	58822026	58823026	+	679.5	f0_balb.idr	intron (NM_175212, intron 1 of 6)	intron (NM_175212, intron 1 of 6)	901.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155945352-2	chr4	155944849	155945849	+	679.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002889).2	promoter-TSS (NR_002889).2	-904.0	NR_002889	545056.0	Mm.266575	NR_002889		Gm5801	EG545056	ubiquitin-conjugating enzyme E2, J2 homolog pseudogene	pseudo	10.5	65.0	64.5	8.5	28.0	30.5
Merged-chr7-100661493-3	chr7	100661015	100662015	+	679.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163182, intron 2 of 7)	intron (NM_001163182, intron 2 of 7)	879.0	NM_013746	27276.0	Mm.491216	NM_013746	ENSMUSG00000030701	Plekhb1	AI315628|PHR1|Phret1|evt-1	pleckstrin homology domain containing, family B (evectins) member 1	protein-coding	0.0	6.0	1.5	6.0	6.0	0.0
Merged-chr19-55747461-6	chr19	55746916	55747916	+	679.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 3 of 15)	intron (NR_138565, intron 3 of 15)	5606.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	4.0	3.5	17.5	6.0	35.0	15.0
Merged-chr16-23626008-4	chr16	23625498	23626498	+	679.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16079.0	NM_023386	67775.0	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-90246447-2	chr11	90245947	90246947	+	679.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-3029.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41311166-2	chr19	41310726	41311726	+	679.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 8 of 16)	LTR87|LTR|ERVL?	-47222.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	9.0	16.0	4.5	2.0	5.0	5.5
Merged-chr15-58935235-2	chr15	58934735	58935735	+	679.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_023172, intron 1 of 3)	B4A|SINE|B4	1425.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35076764-2	chr17	35076255	35077255	+	679.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027366)	promoter-TSS (NM_027366)	-187.0	NM_027366	70274.0	Mm.250491	NM_027366	ENSMUSG00000013766	Ly6g6e	2310011I02Rik|G6e	lymphocyte antigen 6 complex, locus G6E	protein-coding	4.0	19.5	10.0	5.0	16.0	13.5
Merged-chr11-77377481-2	chr11	77376981	77377981	+	679.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291190, intron 1 of 13)	intron (NM_001291190, intron 1 of 13)	29201.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125138579-2	chr6	125138070	125139070	+	679.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_138747, intron 9 of 15)	intron (NM_138747, intron 9 of 15)	-6654.0	NR_126495	320678.0	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	5.0	0.0	0.0	2.0	0.0	0.0
Merged-chr9-108055253-3	chr9	108054735	108055735	+	679.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177275, exon 1 of 1)	3' UTR (NM_177275, exon 1 of 1)	2076.0	NM_177275	320844.0	Mm.449806	NM_177275	ENSMUSG00000032593	Amigo3	E430002N15Rik|ali3|mKIAA1851	adhesion molecule with Ig like domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45545619-4	chr17	45545054	45546054	+	679.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001013749, exon 3 of 3)	exon (NM_001013749, exon 3 of 3)	4123.0	NM_001013749	210573.0	Mm.329064	NM_001013749	ENSMUSG00000096847	Tmem151b	Gm323	transmembrane protein 151B	protein-coding	0.0	0.0	0.0	8.0	0.0	0.0
Merged-chr7-4966718-3	chr7	4966214	4967214	+	679.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001200041, exon 4 of 4)	3' UTR (NM_001200041, exon 4 of 4)	-2366.0	NM_001146329	381836.0	Mm.297829	NM_001146329	ENSMUSG00000030433	Sbk2	Gm1079|Sgk069	SH3-binding domain kinase family, member 2	protein-coding	2.0	4.5	2.5	0.0	0.0	0.0
Merged-chr3-127457960-1	chr3	127457460	127458460	+	679.333313	f0_c57.idr	intron (NM_001327938, intron 1 of 47)	B2_Mm2|SINE|B2	41155.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	18.5	35.5	18.0	5.5	5.5	4.5
Merged-chr11-97072736-2	chr11	97072236	97073236	+	679.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8968.0	NR_106181	102465893.0		NR_106181	ENSMUSG00000098769	Mir8103	Gm27841|mmu-mir-8103	microRNA 8103	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65787633-3	chr9	65787116	65788116	+	679.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172536, intron 2 of 9)	intron (NM_172536, intron 2 of 9)	39948.0	NM_172536	214812.0	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding	12.5	0.0	4.0	3.5	3.0	4.0
Merged-chr17-35261128-3	chr17	35260677	35261677	+	679.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVK26-int|LTR|ERVK	-1917.0	NM_010380	14964.0	Mm.439675	NM_010380	ENSMUSG00000073411	H2-D1	H-2D|H2-D	histocompatibility 2, D region locus 1	protein-coding	2.0	8.0	0.5	5.0	4.0	0.5
Merged-chr17-79444690-2	chr17	79444191	79445191	+	679.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33194.0	NR_033463	74622.0	Mm.311921	NR_033463		4930429F11Rik	-	RIKEN cDNA 4930429F11 gene	ncRNA	27.5	57.5	32.0	0.5	1.5	1.5
Merged-chr4-155219188-2	chr4	155218687	155219687	+	679.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	3348.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	2.0	2.0	1.0	0.0	2.0	0.0
Merged-chr9-13687338-2	chr9	13686838	13687838	+	679.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_173776, intron 1 of 3)	intron (NM_173776, intron 1 of 3)	24878.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-33698316-2	chr8	33697827	33698827	+	679.25	f0_c57.idr|f1_c57bl6.idr	TTS (NM_010344)	TTS (NM_010344)	-33587.0	NM_001167921	68153.0	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding	7.0	9.5	1.0	0.0	2.0	0.0
Merged-chr6-147116768-3	chr6	147116257	147117257	+	679.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25682.0	NM_001081237	232539.0	Mm.491206	NM_001081237	ENSMUSG00000040102	Klhl42	A330079N23Rik|AI450355|C230080I20Rik|Ctb9|Klhdc5|mKIAA1340	kelch-like 42	protein-coding	10.0	0.0	0.0	2.0	9.0	3.5
Merged-chr14-103005568-2	chr14	103005068	103006068	+	679.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 2 of 2)	intron (NR_045657, intron 2 of 2)	-22931.0	NM_177715	239217.0	Mm.246466	NM_177715	ENSMUSG00000098557	Kctd12	AU046135|AW538430|Pfet1|Pfetin	potassium channel tetramerisation domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70387883-2	chr14	70387383	70388383	+	679.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_021308, intron 20 of 22)	MER77B|LTR|ERVL	-36459.0	NM_001135151	213053.0	Mm.270647	NM_144808	ENSMUSG00000022094	Slc39a14	FAD-123|ZIP-14|Zip14|fad123	solute carrier family 39 (zinc transporter), member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124094480-2	chr5	124093980	124094980	+	679.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_019875, intron 1 of 11)	intron (NM_019875, intron 1 of 11)	1318.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95693046-2	chr9	95692546	95693546	+	679.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 7 of 8)	intron (NM_029620, intron 7 of 8)	55418.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-41566287-2	chr12	41565787	41566787	+	679.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	-80230.0	NM_010733	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-27086718-3	chr8	27086257	27087257	+	679.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054044, intron 1 of 18)	intron (NM_054044, intron 1 of 18)	916.0	NM_054044	78560.0	Mm.87046	NM_054044	ENSMUSG00000031486	Adgra2	8430414O08Rik|9530074E10Rik|Gpr124|Tem5|mKIAA1531	adhesion G protein-coupled receptor A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87425346-2	chr11	87424846	87425846	+	679.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_031386, intron 1 of 30)	intron (NM_031386, intron 1 of 30)	-2245.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.0	10.0	16.0	16.5	13.0	12.5
Merged-chr12-78748147-2	chr12	78747668	78748668	+	679.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019579)	promoter-TSS (NM_019579)	-779.0	NM_019579	56217.0	Mm.425777	NM_019579	ENSMUSG00000021112	Mpp5	3830420B02Rik|AI255216|AI644496|Pals1	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)	protein-coding	1.5	5.0	4.0	1.0	4.5	8.5
Merged-chr18-33790233-4	chr18	33789728	33790728	+	679.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4664.0	NR_038152	69749.0	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	0.0	3.0	3.0	3.0	5.0	6.0
Merged-chr2-84784077-3	chr2	84783579	84784579	+	679.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR53|LTR|ERVL	-8650.0	NM_009776	12258.0	Mm.38888	NM_009776	ENSMUSG00000023224	Serping1	C1INH|C1nh	serine (or cysteine) peptidase inhibitor, clade G, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98945204-2	chr11	98944704	98945704	+	679.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177303, intron 1 of 8)	MIRb|SINE|MIR	5493.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-40776452-3	chr11	40775951	40776951	+	679.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger13a|DNA|TcMar-Tigger	-21165.0	NM_009831	12450.0	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	2.5	3.5	3.0	0.5	1.0	6.0
Merged-chr10-43579207-2	chr10	43578707	43579707	+	679.083374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009846)	promoter-TSS (NM_009846)	38.0	NM_009846	12484.0	Mm.29742	NM_009846	ENSMUSG00000047139	Cd24a	Cd24|HSA|Ly-52|nectadrin	CD24a antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84288681-4	chr12	84288180	84289180	+	679.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252625, intron 1 of 9)	B3|SINE|B2	3384.0	NM_001252626	77219.0	Mm.246127	NM_029880	ENSMUSG00000072946	Ptgr2	1810016I24Rik|9130222H03Rik|9630002F03Rik|AI838763|B830026H24Rik|PGR-2|PRG-2|Zadh1	prostaglandin reductase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34562670-4	chr19	34562159	34563159	+	679.016663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355262, intron 1 of 2)	intron (NM_001355262, intron 1 of 2)	11571.0	NM_001355262	15958.0	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116543080-2	chr7	116542580	116543580	+	679.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38711.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127164259-2	chr7	127163759	127164759	+	679.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-26436.0	NM_001037810	20737.0	Mm.283714	NM_009259	ENSMUSG00000051457	Spn	A630014B01Rik|Cd43|Galgp|Ly-48|Ly48	sialophorin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34228618-1	chr19	34228118	34229118	+	679.0	f0_balb.idr	intron (NM_001360719, intron 3 of 10)	intron (NM_001360719, intron 3 of 10)	-4007.0	NM_001360720	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	4.0	4.5	11.5	9.5	3.5	13.5
Merged-chr3-132859913-2	chr3	132859413	132860413	+	679.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_102297, intron 1 of 3)	intron (NR_102297, intron 1 of 3)	18683.0	NR_102297	101243624.0	Mm.306256	NR_102297	ENSMUSG00000106230	Gm29811	-	predicted gene, 29811	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106686807-1	chr9	106686307	106687307	+	679.0	f1_balb.idr	promoter-TSS (NM_001286498)	promoter-TSS (NM_001286498)	-855.0	NM_001286498	21767.0	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	7.5	0.5	17.5	5.5	6.0	11.5
Merged-chr5-146825137-1	chr5	146824637	146825637	+	679.0	f1_c57bl6.idr	Intergenic	Intergenic	-7753.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	55.0	69.0	84.0	10.0	32.5	27.5
Merged-chr10-80898079-2	chr10	80897579	80898579	+	679.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081688, exon 16 of 18)	exon (NM_001081688, exon 16 of 18)	2890.0	NM_013895	30055.0	Mm.142132	NM_013895	ENSMUSG00000020219	Timm13	D10Ertd378e|Tim9|Timm9	translocase of inner mitochondrial membrane 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121949547-2	chr8	121949047	121950047	+	679.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110100)	promoter-TSS (NM_001110100)	-945.0	NM_016812	53325.0	Mm.287163	NM_016812	ENSMUSG00000025316	Banp	AA408158|SMAR1	BTG3 associated nuclear protein	protein-coding	2.5	6.0	3.5	0.0	1.5	2.5
Merged-chr5-150196013-1	chr5	150195513	150196513	+	679.0	f1_c57bl6.idr	Intergenic	Intergenic	-63917.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	23.5	0.0	11.0	8.5	7.5	3.5
Merged-chr2-35329658-2	chr2	35329158	35330158	+	679.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013515, intron 1 of 6)	intron (NM_013515, intron 1 of 6)	7351.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149049051-1	chr4	149048551	149049551	+	679.0	f0_balb.idr	intron (NM_019781, intron 2 of 8)	intron (NM_019781, intron 2 of 8)	50761.0	NM_019781	56273.0	Mm.184172	NM_019781	ENSMUSG00000028975	Pex14	Pex14p|R75137	peroxisomal biogenesis factor 14	protein-coding	0.5	2.5	1.0	0.0	2.5	4.0
Merged-chr9-77906431-2	chr9	77905931	77906931	+	679.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10934.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87974942-2	chr11	87974421	87975421	+	679.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11664.0	NM_001168472	68097.0	Mm.246436	NM_026556	ENSMUSG00000020483	Dynll2	1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2	dynein light chain LC8-type 2	protein-coding	0.0	4.0	0.0	1.0	0.0	1.0
Merged-chr9-45285286-2	chr9	45284786	45285786	+	679.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-16137.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21957463-2	chr9	21956963	21957963	+	679.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025870, exon 2 of 2)	3' UTR (NM_025870, exon 2 of 2)	-1457.0	NR_132099	100049077.0	Mm.46647	NR_132099		Gm45914	-	predicted gene, 45914	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71493499-1	chr17	71492999	71493999	+	679.0	f1_c57bl6.idr	Intergenic	Intergenic	-18156.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	1.0	0.0	0.0	0.0	1.5	0.0
Merged-chr16-91684930-2	chr16	91684430	91685430	+	679.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021720, intron 3 of 9)	intron (NM_021720, intron 3 of 9)	3798.0	NM_021720	60364.0	Mm.328698	NM_021720	ENSMUSG00000022960	Donson	1110025J21Rik|AI845729|ORF60	downstream neighbor of SON	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84417979-1	chr8	84417479	84418479	+	679.0	f0_balb.idr	intron (NM_001252060, intron 1 of 47)	intron (NM_001252060, intron 1 of 47)	2615.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	5.0	3.5	1.0	0.5	23.0	16.5
Merged-chr18-15205018-2	chr18	15204518	15205518	+	679.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53572.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-96387759-2	chr2	96387259	96388259	+	679.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289742, intron 1 of 7)	L1_Mus3|LINE|L1	69590.0	NM_001289743	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46254500-2	chr19	46254000	46255000	+	679.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178930, intron 6 of 39)	intron (NM_178930, intron 6 of 39)	-50237.0	NM_001177369	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54933525-1	chr6	54933025	54934025	+	679.0	f0_balb.idr	intron (NM_001171007, intron 9 of 11)	intron (NM_001171007, intron 9 of 11)	38136.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-5218387-2	chr3	5217887	5218887	+	679.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030708)	promoter-TSS (NM_030708)	-167.0	NM_030708	80892.0	Mm.41522	NM_030708	ENSMUSG00000025255	Zfhx4	A930021B15|C130041O22Rik|Zfh-4|Zfh4	zinc finger homeodomain 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-54671978-3	chr8	54671497	54672497	+	679.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172152, intron 9 of 29)	intron (NM_001172152, intron 9 of 29)	46681.0	NM_028220	244484.0	Mm.95281	NM_028220	ENSMUSG00000039375	Wdr17	3010002I12Rik|B230207L18Rik	WD repeat domain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96818516-2	chr15	96818016	96819016	+	679.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-118788.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106791979-2	chr11	106791479	106792479	+	679.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166685, intron 2 of 18)	intron (NM_001166685, intron 2 of 18)	2727.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4003415-2	chr19	4002915	4003915	+	679.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021791)	promoter-TSS (NM_021791)	30.0	NM_021791	60425.0	Mm.266972	NM_021791	ENSMUSG00000024871	Doc2g	D830013O18Rik	double C2, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58016442-2	chr15	58015942	58016942	+	679.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	17852.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-195015138-1	chr1	195014638	195015638	+	679.0	f0_balb.idr	Intergenic	Intergenic	-2261.0	NR_015566	320977.0	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132249845-2	chr2	132249345	132250345	+	679.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011045, exon 5 of 6)	exon (NM_011045, exon 5 of 6)	-2057.0	NM_001141971	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-69343732-2	chr18	69343232	69344232	+	679.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013685)	promoter-TSS (NM_013685)	-760.0	NM_013685	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	15.5	23.0	14.0	9.0	39.5	22.5
Merged-chr14-98870073-1	chr14	98869573	98870573	+	679.0	f0_balb.idr	Intergenic	Intergenic	176063.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95861022-2	chr16	95860522	95861522	+	679.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040484, intron 1 of 3)	intron (NR_040484, intron 1 of 3)	37691.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3916180-2	chr19	3915680	3916680	+	679.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026316, intron 8 of 9)	intron (NM_026316, intron 8 of 9)	-3406.0	NM_001271444	225887.0	Mm.44227	NM_144870	ENSMUSG00000059734	Ndufs8	BC021616|CI-23kD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27548144-2	chr2	27547644	27548644	+	679.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	32997.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4083619-2	chr7	4083119	4084119	+	679.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033568, intron 6 of 8)	B3A|SINE|B2	-20415.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32778017-1	chr12	32777517	32778517	+	679.0	f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	-42318.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	3.5	13.0	8.0	16.5	4.5	0.5
Merged-chr7-19418138-1	chr7	19417638	19418638	+	679.0	f1_c57bl6.idr	non-coding (NR_073014, exon 4 of 4)	non-coding (NR_073014, exon 4 of 4)	3279.0	NR_073014	100503495.0	Mm.410762	NR_073014	ENSMUSG00000040705	A930016O22Rik	-	RIKEN cDNA A930016O22 gene	ncRNA	0.0	1.0	0.5	0.0	1.0	0.0
Merged-chr12-69368643-2	chr12	69368143	69369143	+	679.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3507.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-80953113-4	chr13	80952648	80953648	+	679.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10926.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53884913-2	chr11	53884413	53885413	+	679.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011396, intron 1 of 9)	ID_B1|SINE|B4	6790.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-34119619-2	chr16	34119119	34120119	+	679.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 33 of 59)	intron (NM_177357, intron 33 of 59)	-152581.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-74796459-1	chr5	74795959	74796959	+	679.0	f1_balb.idr	Intergenic	L1Md_T|LINE|L1	-93556.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	1.0	0.0	1.5	9.0	0.0	0.0
Merged-chr16-21587615-2	chr16	21587115	21588115	+	679.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 44 of 46)	intron (NM_001081366, intron 44 of 46)	107050.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117369135-2	chr8	117368635	117369635	+	679.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	19965.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128775348-1	chr2	128774848	128775848	+	679.0	f1_c57bl6.idr	intron (NM_008587, intron 9 of 18)	Tigger6a|DNA|TcMar-Tigger	-42955.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	12.0	29.0	32.0	11.0	28.0	29.0
Merged-chr5-115550189-1	chr5	115549689	115550689	+	679.0	f1_c57bl6.idr	intron (NM_011223, intron 6 of 10)	intron (NM_011223, intron 6 of 10)	-9278.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	5.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-98472688-2	chr8	98472188	98473188	+	679.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-539199.0	NR_110579	100873092.0	Mm.414599	NR_110579	ENSMUSG00000089819	Gm15679	-	predicted gene 15679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62881972-1	chr4	62881472	62882472	+	679.0	f1_balb.idr	Intergenic	Intergenic	-83602.0	NM_028326	72701.0	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	0.0	6.0	0.0	2.0	1.5	2.0
Merged-chr4-102588514-1	chr4	102588014	102589014	+	679.0	f0_balb.idr	intron (NM_001177982, intron 1 of 9)	intron (NM_001177982, intron 1 of 9)	956.0	NM_001177982	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	1.0	6.0	7.0	2.0	14.5	3.5
Merged-chr8-62682802-2	chr8	62682302	62683302	+	679.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-268430.0	NM_001252620	72902.0	Mm.334552	NM_023689	ENSMUSG00000054162	Spock3	2900045C01Rik|AI428471|mKIAA4039	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	protein-coding	0.0	6.5	2.5	0.0	0.0	0.0
Merged-chr9-57520436-2	chr9	57519936	57520936	+	679.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007747)	promoter-TSS (NM_007747)	-796.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-81889176-3	chr12	81888683	81889683	+	679.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018814, intron 1 of 35)	L1MB2|LINE|L1	29153.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123566441-1	chr4	123565941	123566941	+	679.0	f0_balb.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-49979.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103944473-2	chr2	103943973	103944973	+	679.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-13522.0	NM_001142337	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-6922456-1	chr13	6921956	6922956	+	679.0	f0_balb.idr	Intergenic	Intergenic	-273685.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-93567565-2	chr15	93567065	93568065	+	679.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033217, intron 1 of 7)	intron (NM_001033217, intron 1 of 7)	28326.0	NM_001033217	106042.0	Mm.150314	NM_001033217	ENSMUSG00000036158	Prickle1	1110058P22Rik|AW215793|Prickle|b2b019Clo|mpk1	prickle planar cell polarity protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82564715-2	chr11	82564215	82565215	+	679.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68638.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96770585-1	chr15	96770085	96771085	+	679.0	f0_balb.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-70857.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-81012329-2	chr8	81011829	81012829	+	679.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027554, intron 1 of 9)	intron (NM_027554, intron 1 of 9)	2577.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	0.0	12.5	9.5	0.0	1.5	2.0
Merged-chr10-75472522-2	chr10	75472022	75473022	+	679.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23012.0	NR_045841	71125.0	Mm.399516	NR_045841		4933407G14Rik	-	RIKEN cDNA 4933407G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-51765225-1	chr9	51764725	51765725	+	679.0	f0_balb.idr	promoter-TSS (NM_175535)	promoter-TSS (NM_175535)	-127.0	NM_175535	244867.0	Mm.400352	NM_175535	ENSMUSG00000053199	Arhgap20	6530403F17Rik|A530023E23Rik|RARhoGAP|mKIAA1391	Rho GTPase activating protein 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3253302-2	chr4	3252802	3253802	+	679.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERVK10C-int|LTR|ERVK	-67997.0	NM_001167535	100312471.0	Mm.377218	NM_001167535	ENSMUSG00000115466	Vmn1r3	Gm11778	vomeronasal 1 receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65682402-2	chr17	65681902	65682902	+	679.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 5 of 6)	intron (NM_133685, intron 5 of 6)	-40198.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-3329076-3	chr18	3328582	3329582	+	678.977783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110851, intron 1 of 4)	B2_Mm1t|SINE|B2	-1491.0	NM_001110850	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70597562-3	chr11	70597068	70598068	+	678.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 2 of 30)	intron (NM_016713, intron 2 of 30)	-18326.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	10.5	8.0	8.0	1.0	0.5	2.5
Merged-chr6-39056104-4	chr6	39055623	39056623	+	678.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 9 of 12)	intron (NM_011539, intron 9 of 12)	11463.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-54258148-2	chr5	54257648	54258648	+	678.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-91844.0	NR_038045	330086.0	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13	predicted gene 10440	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96872720-2	chr11	96872220	96873220	+	678.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22327.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	0.0	3.5	6.0	0.5	0.0	2.0
Merged-chr19-40680668-2	chr19	40680168	40681168	+	678.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	20898.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	4.0	37.5	14.5	9.5	57.0	14.0
Merged-chr11-120821055-2	chr11	120820554	120821554	+	678.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_007988, exon 4 of 43)	exon (NM_007988, exon 4 of 43)	3493.0	NM_007988	14104.0	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79749359-2	chr12	79748859	79749859	+	678.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 8 of 10)	intron (NM_009014, intron 8 of 10)	175374.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-154258095-2	chr1	154257595	154258595	+	678.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_108050, intron 1 of 2)	MIR3|SINE|MIR	-1189.0	NR_040629	78112.0	Mm.401935	NR_040629	ENSMUSG00000099933	4930452N14Rik	-	RIKEN cDNA 4930452N14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86165447-2	chr15	86164937	86165937	+	678.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 2 of 12)	intron (NM_145475, intron 2 of 12)	-20291.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0.0	1.5	4.0	7.0	3.5	6.0
Merged-chr5-72558210-2	chr5	72557710	72558710	+	678.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_153351, intron 2 of 21)	intron (NR_153351, intron 2 of 21)	1435.0	NM_001359837	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-3733452-3	chr16	3732975	3733975	+	678.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-10624.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64039032-3	chr15	64038541	64039541	+	678.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	20723.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99274824-2	chr10	99274324	99275324	+	678.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	11593.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12169574-3	chr18	12169102	12170102	+	678.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029623, intron 2 of 19)	intron (NM_029623, intron 2 of 19)	872.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-70613581-3	chr18	70613084	70614084	+	678.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010773, intron 3 of 6)	intron (NM_010773, intron 3 of 6)	45292.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67415926-3	chr15	67415445	67416445	+	678.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERV3-16A3_I-int|LTR|ERVL	189176.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-88438164-3	chr9	88437664	88438664	+	678.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359958, intron 1 of 28)	intron (NM_001359958, intron 1 of 28)	787.0	NM_001359958	244962.0	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93967260-3	chr10	93966727	93967727	+	678.799988	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001304572, exon 12 of 12)	3' UTR (NM_001304572, exon 12 of 12)	-3364.0	NR_029764	723908.0		NR_029764	ENSMUSG00000065607	Mir331	Mirn331|mmu-mir-331	microRNA 331	ncRNA	31.5	78.5	58.5	0.0	2.5	5.5
Merged-chr8-25089709-3	chr8	25089208	25090208	+	678.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 1 of 11)	intron (NM_031257, intron 1 of 11)	12103.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-67097764-2	chr14	67097241	67098241	+	678.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25270.0	NM_001205188	71978.0	Mm.273997	NM_028032	ENSMUSG00000022052	Ppp2r2a	2410004D02Rik|mKIAA1541	protein phosphatase 2, regulatory subunit B, alpha	protein-coding	0.0	1.0	0.0	2.0	0.0	1.5
Merged-chr5-127613001-2	chr5	127612545	127613545	+	678.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_133895, intron 1 of 7)	B1_Mus2|SINE|Alu	4347.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	4.5	17.0	5.5	4.5	10.0	7.0
Merged-chr7-18959593-4	chr7	18959073	18960073	+	678.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001029877, exon 4 of 4)	3' UTR (NM_001029877, exon 4 of 4)	-27951.0	NM_194064	378430.0	Mm.277153	NM_194064	ENSMUSG00000051965	Nanos2	nos2	nanos C2HC-type zinc finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91887970-2	chr16	91887447	91888447	+	678.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 29 of 38)	intron (NM_010587, intron 29 of 38)	43683.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.5	0.5	0.5	0.0	0.0
Merged-chr9-57659940-3	chr9	57659437	57660437	+	678.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6306.0	NM_001304761	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46213320-3	chr18	46212807	46213807	+	678.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178872)	promoter-TSS (NM_178872)	-700.0	NM_178872	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37851723-3	chr19	37851224	37852224	+	678.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153916.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	5.5	0.5	1.5	3.0	0.0	6.5
Merged-chr2-167643951-2	chr2	167643451	167644451	+	678.666687	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145538, exon 6 of 6)	3' UTR (NM_145538, exon 6 of 6)	-11946.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80967587-3	chr10	80967081	80968081	+	678.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	33784.0	NM_001038655	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124898922-3	chr5	124898428	124899428	+	678.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME2z|LINE|L1	36223.0	NM_001081750	269704.0	Mm.138617	NM_001081750	ENSMUSG00000079215	Zfp664	AW060232|D930038J03Rik|ZFOC1|Znf664	zinc finger protein 664	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156669285-2	chr1	156668760	156669760	+	678.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_023141, intron 3 of 5)	intron (NM_023141, intron 3 of 5)	5079.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	0.0	0.0	7.0	1.5	3.5	3.5
Merged-chr6-99519279-3	chr6	99518796	99519796	+	678.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347345, intron 1 of 19)	intron (NM_001347345, intron 1 of 19)	1697.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47485923-2	chr17	47485423	47486423	+	678.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356290, intron 7 of 7)	L2a|LINE|L2	16368.0	NM_001356290	63856.0	Mm.275901	NM_022015	ENSMUSG00000023980	Taf8	AW260255|Tbn	TATA-box binding protein associated factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27742921-2	chr2	27742421	27743421	+	678.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 4 of 9)	intron (NM_001290481, intron 4 of 9)	32338.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-49688768-4	chr4	49688288	49689288	+	678.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033351, intron 6 of 8)	intron (NM_001033351, intron 6 of 8)	-6805.0	NM_001004025	19059.0	Mm.46125	NM_001004025	ENSMUSG00000028310	Ppp3r2	CaNB2|CnB2	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type II)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-13027716-3	chr15	13027210	13028210	+	678.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007666)	TTS (NM_007666)	145965.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	15.0	14.5	3.0	4.5	1.0	2.0
Merged-chr16-5014729-2	chr16	5014229	5015229	+	678.583374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001079814, exon 16 of 16)	3' UTR (NM_001079814, exon 16 of 16)	-1176.0	NM_133185	66049.0	Mm.27792	NM_133185	ENSMUSG00000022540	Rogdi	0610011C19Rik|AU020118|C76152|Lzf	rogdi homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89331047-4	chr3	89330544	89331544	+	678.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6984.0	NM_007910	13639.0	Mm.16332	NM_007910	ENSMUSG00000028040	Efna4	EFL-4|Epl4|LERK-4	ephrin A4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-75155879-3	chr5	75155380	75156380	+	678.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083316)	promoter-TSS (NM_001083316)	-286.0	NM_001083316	18595.0	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	0.0	5.0	2.5	4.0	13.5	3.5
Merged-chr6-72159290-2	chr6	72158825	72159825	+	678.549988	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-36128.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54885902-2	chr14	54885402	54886402	+	678.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007537, exon 4 of 4)	3' UTR (NM_007537, exon 4 of 4)	2477.0	NM_007537	12050.0	Mm.6967	NM_007537	ENSMUSG00000089682	Bcl2l2	AW048834|Bcl-w|Gtrgal2|Gtrosa41|bclw|c98	BCL2-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45107182-2	chr13	45106684	45107684	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105088.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.0	3.0	0.5	34.5	38.5	67.0
Merged-chr16-52591954-2	chr16	52591454	52592454	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	-138873.0	NM_001331110	11658.0	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37429884-2	chr13	37429384	37430384	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84539.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132003233-2	chr2	132002733	132003733	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175445, intron 6 of 10)	intron (NM_175445, intron 6 of 10)	26755.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-147895859-2	chr2	147895359	147896359	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	149605.0	NM_001291067	15376.0	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-94866276-2	chr17	94865776	94866776	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024731, intron 1 of 4)	intron (NM_001024731, intron 1 of 4)	1358.0	NM_001024731	100044193.0		NM_001024731	ENSMUSG00000095193	Gm20939	-	predicted gene, 20939	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-70356245-2	chr4	70355745	70356745	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313762, intron 5 of 33)	intron (NM_001313762, intron 5 of 33)	54190.0	NM_001313762	214444.0	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83463390-2	chr15	83462890	83463890	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358643, intron 1 of 9)	intron (NM_001358643, intron 1 of 9)	1216.0	NM_001358641	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50250799-2	chr11	50250299	50251299	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A1|LTR|ERVK	-12267.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166513224-2	chr2	166512724	166513724	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51298.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27083114-2	chr3	27082614	27083614	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70740.0	NM_007900	13605.0	Mm.261453	NM_007900	ENSMUSG00000027699	Ect2	AI528536	ect2 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-82626804-2	chr10	82626304	82627304	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3034.0	NM_001358517	21665.0	Mm.284252	NM_011561	ENSMUSG00000034674	Tdg	E130317C12Rik|JZA-3|Jza1	thymine DNA glycosylase	protein-coding	0.0	3.0	0.0	7.0	0.0	0.5
Merged-chr7-45562031-2	chr7	45561531	45562531	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025330, intron 5 of 8)	intron (NM_025330, intron 5 of 8)	7103.0	NM_025330	66065.0	Mm.285710	NM_025330	ENSMUSG00000030825	Hsd17b14	0610039E24Rik|Dhrs10|retSDR3	hydroxysteroid (17-beta) dehydrogenase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32393807-2	chr18	32393307	32394307	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 1 of 17)	MTEa|LTR|ERVL-MaLR	-15523.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4158854-2	chr19	4158354	4159354	+	678.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_021485, exon 9 of 15)	exon (NM_021485, exon 9 of 15)	4208.0	NM_016933	19265.0	Mm.271937	NM_016933	ENSMUSG00000045826	Ptprcap	AI605264|CD-45-AP|LPAP|LSM-1	protein tyrosine phosphatase, receptor type, C polypeptide-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122870641-2	chr6	122870141	122871141	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-3916.0	NM_026267	67602.0	Mm.288114	NM_026267	ENSMUSG00000030327	Necap1	1200016B17Rik|AI747569|mFLJ00061	NECAP endocytosis associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-56152295-2	chr9	56151795	56152795	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019793, intron 1 of 6)	intron (NM_019793, intron 1 of 6)	8775.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131912161-2	chr1	131911661	131912661	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145804, intron 1 of 6)	B1_Mus1|SINE|Alu	1703.0	NM_175294	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-126918484-2	chr10	126917984	126918984	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-17113.0	NM_001358970	68876.0	Mm.276769	NM_026858	ENSMUSG00000025436	Atp23	1110068E08Rik|2410012H02Rik|Xrcc6bp1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78087145-2	chr11	78086645	78087645	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-6762.0	NM_022313	57837.0	Mm.21096	NM_022313	ENSMUSG00000020832	Eral1	2610524P08Rik|9130407C09Rik|AU019798|Era|M-ERA|MERA-S|MERA-W	Era (G-protein)-like 1 (E. coli)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-108420118-2	chr11	108419618	108420618	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5148.0	NM_029606	76380.0	Mm.344071	NM_029586	ENSMUSG00000020728	Cep112	1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco	centrosomal protein 112	protein-coding	1.0	0.0	0.0	0.0	0.5	3.0
Merged-chr11-116949961-2	chr11	116949461	116950461	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172948, intron 8 of 16)	intron (NM_172948, intron 8 of 16)	31098.0	NM_172948	268510.0	Mm.35141	NM_172948	ENSMUSG00000043857	Mgat5b	C330018B01|GnT-IX|mGnTVB	mannoside acetylglucosaminyltransferase 5, isoenzyme B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124493871-2	chr6	124493371	124494371	+	678.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_181344, exon 2 of 6)	exon (NM_181344, exon 2 of 6)	758.0	NM_181344	232371.0	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-36138598-2	chr2	36138098	36139098	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026422, intron 1 of 6)	intron (NM_026422, intron 1 of 6)	-1894.0	NR_027515	67889.0	Mm.205937	NM_026434	ENSMUSG00000026889	Rbm18	2010004P11Rik|AU015530	RNA binding motif protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122217719-1	chr7	122217219	122218219	+	678.5	f0_balb.idr	Intergenic	Intergenic	-1777.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6912716-2	chr19	6912216	6913216	+	678.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_007953, exon 5 of 7)	exon (NM_007953, exon 5 of 7)	1570.0	NR_105956	102466213.0		NR_105956	ENSMUSG00000098413	Mir6990	Gm27726|mmu-mir-6990	microRNA 6990	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-63928948-2	chr15	63928448	63929448	+	678.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_144846)	TTS (NM_144846)	14487.0	NR_029414	74460.0	Mm.390801	NR_029414	ENSMUSG00000100127	Gsdmcl-ps	4933426G20Rik	gasdermin C-like, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59528635-2	chr11	59528135	59529135	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER31A|LTR|ERV1	-12934.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92828851-2	chr16	92828351	92829351	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2777.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28519360-2	chr17	28518860	28519860	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11501.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45351127-2	chr7	45350627	45351627	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029741, intron 15 of 29)	B4A|SINE|B4	-15034.0	NR_015480	50994.0	Mm.389897	NM_016664	ENSMUSG00000091510	Mtag2	MAG	metastasis associated gene 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-45947706-2	chr10	45947206	45948206	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	140002.0	NR_040624	320363.0	Mm.123343	NR_040624	ENSMUSG00000110874	D030045P18Rik	-	RIKEN cDNA D030045P18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-132408341-2	chr6	132407844	132408844	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERVK10C-int|LTR|ERVK	-44209.0	NM_053251	114600.0	Mm.428480	NM_053251		Gm4736	EG114600|Mp4|Mp6	predicted gene 4736	protein-coding	7.0	0.0	3.0	0.0	0.5	3.0
Merged-chr4-53098181-2	chr4	53097681	53098681	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 7 of 49)	intron (NM_013454, intron 7 of 49)	61714.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135743677-2	chr5	135743138	135744138	+	678.5	f0_balb.idr|f1_balb.idr	intron (NM_172541, intron 1 of 11)	intron (NM_172541, intron 1 of 11)	534.0	NM_172541	215210.0	Mm.11688	NM_172541	ENSMUSG00000039886	Tmem120a	2010310D06Rik|Tmpit	transmembrane protein 120A	protein-coding	1.5	7.0	5.0	2.0	3.5	1.0
Merged-chr7-96456748-2	chr7	96456248	96457248	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 3 of 32)	intron (NM_011858, intron 3 of 32)	-114784.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	0.5	3.0	1.0	3.0	0.5	3.0
Merged-chr7-97312267-2	chr7	97311767	97312767	+	678.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001177412, exon 9 of 10)	exon (NM_001177412, exon 9 of 10)	13697.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0.0	0.0	0.0	0.0	1.0	2.0
Merged-chr9-80158993-2	chr9	80158493	80159493	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-6041.0	NM_001039546	17920.0	Mm.4040	NM_008662	ENSMUSG00000033577	Myo6	BC029719|Tlc|sv	myosin VI	protein-coding	0.0	1.5	0.0	1.0	0.0	0.0
Merged-chr6-125317567-2	chr6	125317067	125318067	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3682.0	NM_010736	17000.0	Mm.3122	NM_010736	ENSMUSG00000030339	Ltbr	AI256028|LTbetaR|Ltar|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFRrp|Tnfbr|Tnfrsf3	lymphotoxin B receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-70534333-2	chr4	70533833	70534833	+	678.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172694, exon 1 of 6)	exon (NM_172694, exon 1 of 6)	595.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79773742-2	chr10	79773242	79774242	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	PB1D10|SINE|Alu	-3532.0	NM_031380	83554.0	Mm.251710	NM_031380	ENSMUSG00000020325	Fstl3	E030038F23Rik|Flrg	follistatin-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40560031-2	chr12	40559531	40560531	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	113978.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149169666-2	chr4	149169166	149170166	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-2961.0	NM_001081274	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122778368-2	chr5	122777868	122778868	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199676, intron 1 of 16)	intron (NM_001199676, intron 1 of 16)	1042.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21912429-2	chr9	21911929	21912929	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031874, intron 4 of 4)	intron (NM_031874, intron 4 of 4)	5754.0	NM_031874	19340.0	Mm.260157	NM_031874	ENSMUSG00000019066	Rab3d	C130057E11Rik	RAB3D, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102235972-2	chr7	102235472	102236472	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_111937, intron 2 of 5)	intron (NR_111937, intron 2 of 5)	12944.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	14.0	3.0	2.0	1.0	2.5	3.0
Merged-chr8-23198504-2	chr8	23198004	23199004	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018743, intron 1 of 12)	intron (NM_018743, intron 1 of 12)	9949.0	NM_018743	102247.0	Mm.200898	NM_018743	ENSMUSG00000031545	Gpat4	AU041707|AW545732|Agpat6|Tsarg7	glycerol-3-phosphate acyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-38030958-4	chr19	38030437	38031437	+	678.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 1 of 53)	RLTR26C_MM|LTR|ERVK	12640.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	21.5	84.0	50.5	1.5	7.0	36.0
Merged-chr11-58981445-2	chr11	58980923	58981923	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053168, intron 2 of 5)	intron (NM_053168, intron 2 of 5)	3330.0	NM_053168	94091.0	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	0.0	6.0	0.0	0.0	0.0	2.0
Merged-chr2-168158566-2	chr2	168158066	168159066	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4053.0	NR_040327	77017.0	Mm.407822	NR_040327	ENSMUSG00000087648	E130018N17Rik	-	RIKEN cDNA E130018N17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57818919-2	chr15	57818419	57819419	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 2 of 3)	intron (NM_199449, intron 2 of 3)	73499.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61965197-2	chr9	61964697	61965697	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 5 of 7)	intron (NM_028748, intron 5 of 7)	-18398.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65582572-2	chr9	65582072	65583072	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2485.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.0	7.5	3.5	4.0	0.0	0.0
Merged-chr5-35215765-3	chr5	35215265	35216265	+	678.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62801.0	NM_007418	11553.0	Mm.57205	NM_007418	ENSMUSG00000045318	Adra2c	Adra-2c|[a]2C|alpha2-C4|alpha2C	adrenergic receptor, alpha 2c	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr10-94573662-2	chr10	94573162	94574162	+	678.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359760, intron 1 of 3)	(TG)n|Simple_repeat|Simple_repeat	-1595.0	NM_001168684	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-18990093-2	chr7	18989593	18990593	+	678.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1152.0	NM_145579	232934.0	Mm.440069	NM_145579	ENSMUSG00000048481	Mypop	Myodysa|P42pop	Myb-related transcription factor, partner of profilin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-96946719-2	chr7	96946220	96947220	+	678.333374	f0_balb.idr|f1_balb.idr	Intergenic	RLTR45|LTR|ERVK	-4807.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	16.5	9.0	28.0	6.0	22.5	11.5
Merged-chr9-14342447-2	chr9	14341947	14342947	+	678.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38795.0	NM_028013	71946.0	Mm.41423	NM_028013	ENSMUSG00000037419	Endod1	2210414F18Rik|2310067E08Rik|C85344	endonuclease domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-15706746-2	chr9	15706246	15707246	+	678.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2992.0	NM_001357566	234967.0	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32318112-3	chr2	32317612	32318612	+	678.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029811)	promoter-TSS (NR_029811)	-153.0	NR_128563	104795665.0		NR_128563	ENSMUSG00000092765	Gm23363	Mir3154|mir-3154|mmu-mir-3154	predicted gene, 23363	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88035680-3	chr15	88035198	88036198	+	678.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-239755.0	NR_105817	102465209.0		NR_105817	ENSMUSG00000098938	Mir6393	Gm27424|mmu-mir-6393	microRNA 6393	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-62697124-3	chr1	62696608	62697608	+	678.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6209.0	NM_001077406	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9119856-2	chr4	9119356	9120356	+	678.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-149437.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-33340793-3	chr15	33340296	33341296	+	678.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176073, intron 4 of 7)	MLT1B|LTR|ERVL-MaLR	65143.0	NR_033608	73486.0	Mm.483393	NM_028551	ENSMUSG00000058101	1700084J12Rik	-	ribosomal protein L7-like 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149077838-2	chr4	149077338	149078338	+	678.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_019781, intron 1 of 8)	intron (NM_019781, intron 1 of 8)	21974.0	NM_019781	56273.0	Mm.184172	NM_019781	ENSMUSG00000028975	Pex14	Pex14p|R75137	peroxisomal biogenesis factor 14	protein-coding	1.5	0.0	0.0	1.5	0.0	0.0
Merged-chr3-75553323-4	chr3	75552826	75553826	+	678.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019745, intron 1 of 7)	intron (NM_019745, intron 1 of 7)	3526.0	NM_019745	56426.0	Mm.316473	NM_019745	ENSMUSG00000027835	Pdcd10	2410003B13Rik|Ccm3|Tfa15|Tfar15	programmed cell death 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54730094-2	chr11	54729593	54730593	+	678.25	f0_balb.idr|f0_c57.idr	intron (NM_178626, intron 3 of 5)	ID|SINE|ID	57610.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91054910-2	chr2	91054410	91055410	+	678.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008948, intron 2 of 11)	intron (NM_008948, intron 2 of 11)	894.0	NM_008948	19182.0	Mm.289832	NM_008948	ENSMUSG00000002102	Psmc3	TBP-1	proteasome (prosome, macropain) 26S subunit, ATPase 3	protein-coding	19.0	30.5	21.0	23.0	35.5	33.0
Merged-chr6-72167233-2	chr6	72166738	72167738	+	678.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-44041.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16797495-2	chr1	16796948	16797948	+	678.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108992.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	0.0	1.0	0.5	0.0	2.5	0.0
Merged-chr17-7396258-3	chr17	7395774	7396774	+	678.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCCC)n|Simple_repeat|Simple_repeat	-10969.0	NM_001142539	667055.0	Mm.327371	NM_001142539	ENSMUSG00000056133	Gm9992	-	predicted gene 9992	protein-coding	0.0	0.0	1.5	0.0	0.0	1.0
Merged-chr13-55428914-3	chr13	55428393	55429393	+	678.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2089.0	NM_021489	58992.0	Mm.42224	NM_021489	ENSMUSG00000021492	F12	FXII|HAF	coagulation factor XII (Hageman factor)	protein-coding	21.0	64.5	43.0	25.0	76.5	32.5
Merged-chr18-46406990-3	chr18	46406555	46407555	+	678.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58761.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	7.5	43.5	18.0	25.0	26.5	30.5
Merged-chr1-33684700-4	chr1	33684195	33685195	+	678.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14871.0	NR_033199	67503.0	Mm.87069	NM_026204	ENSMUSG00000103746	1700001G17Rik	-	RIKEN cDNA 1700001G17 gene	ncRNA	4.0	0.0	2.0	0.0	0.5	1.0
Merged-chr1-171551655-3	chr1	171551178	171552178	+	678.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7515.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	0.0	0.0	0.0	0.0	3.5	0.0
Merged-chr5-146921422-4	chr5	146920933	146921933	+	678.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27224.0	NM_025652	66596.0	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-64850502-2	chr8	64850002	64851002	+	678.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178633)	promoter-TSS (NM_178633)	-578.0	NM_178633	77113.0	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|8530402H02Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21619437-2	chr10	21618937	21619937	+	678.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_027968, intron 2 of 2)	MLT1I|LTR|ERVL-MaLR	26292.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24083008-3	chr7	24082475	24083475	+	678.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289637, intron 1 of 3)	intron (NM_001289637, intron 1 of 3)	1078.0	NM_001289637	210135.0	Mm.32254	NM_172483	ENSMUSG00000057101	Zfp180	2310040I01Rik|AI852378|D130011P11|HHZ168	zinc finger protein 180	protein-coding	0.0	0.5	1.0	0.0	0.0	5.0
Merged-chr1-21086461-3	chr1	21085965	21086965	+	678.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7240.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	0.0	0.0	1.5	2.0	1.0	0.0
Merged-chr7-28394127-2	chr7	28393627	28394627	+	678.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_019458, intron 2 of 13)	B2_Mm2|SINE|B2	1131.0	NM_019458	54624.0	Mm.7916	NM_019458	ENSMUSG00000003437	Paf1	5730511K23Rik|AA675045	Paf1, RNA polymerase II complex component	protein-coding	0.5	0.5	1.5	0.5	1.0	1.5
Merged-chr11-118402915-2	chr11	118402415	118403415	+	678.075012	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011150)	promoter-TSS (NM_011150)	-956.0	NM_011150	19039.0	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139598164-1	chr4	139597664	139598664	+	678.0	f1_c57bl6.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	23444.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	29.0	53.5	49.0	17.0	34.0	38.5
Merged-chr8-122983355-1	chr8	122982855	122983855	+	678.0	f0_balb.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	58929.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25569011-2	chr15	25568511	25569511	+	678.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53539.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116533776-2	chr11	116533276	116534276	+	678.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011451)	promoter-TSS (NM_011451)	538.0	NM_025367	20698.0	Mm.20944	NM_011451	ENSMUSG00000061878	Sphk1	1110006G24Rik|Sk1|Spk1	sphingosine kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17842220-1	chr17	17841720	17842720	+	678.0	f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	11245.0	NM_001162909	75202.0	Mm.227456	NM_029205	ENSMUSG00000080316	Spaca6	4930546H06Rik|9530079D04Rik|B230206P06Rik|Ncrna00085|SPACA6A|let-7e|mir-125a|mir-99b	sperm acrosome associated 6	protein-coding	0.0	0.0	1.5	1.5	0.0	1.0
Merged-chr9-123846280-2	chr9	123845780	123846780	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_148925, intron 1 of 18)	MTC|LTR|ERVL-MaLR	5381.0	NM_148925	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28401300-2	chr7	28400800	28401800	+	678.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175021, exon 13 of 13)	3' UTR (NM_175021, exon 13 of 13)	8304.0	NM_019458	54624.0	Mm.7916	NM_019458	ENSMUSG00000003437	Paf1	5730511K23Rik|AA675045	Paf1, RNA polymerase II complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56746593-2	chr19	56746093	56747093	+	678.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24221.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13617401-2	chr8	13616901	13617901	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 2 of 23)	intron (NM_009025, intron 2 of 23)	-54940.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0.0	0.0	3.0	0.0	3.5	1.0
Merged-chr18-60730056-2	chr18	60729489	60730489	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	MIR3|SINE|MIR	-2423.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	26.0	74.0	47.5	40.5	108.5	55.5
Merged-chr5-39927748-2	chr5	39927232	39928232	+	678.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-283101.0	NM_010474	15476.0	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	0.0	0.5	1.5	0.0	1.0	0.0
Merged-chr2-180258131-2	chr2	180257631	180258631	+	678.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_037274)	TTS (NR_037274)	595.0	NR_037274	100526556.0		NR_037274	ENSMUSG00000092827	Mir3091	mir-3091|mmu-mir-3091	microRNA 3091	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40506636-1	chr9	40506136	40507136	+	678.0	f0_balb.idr	intron (NM_001357617, intron 1 of 20)	MTEa|LTR|ERVL-MaLR	24747.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	6.0	0.0	0.0	9.5	16.0	20.0
Merged-chr11-98926041-2	chr11	98925541	98926541	+	678.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11655.0	NM_009024	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113608961-2	chr5	113608461	113609461	+	678.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	34642.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23578083-1	chr13	23577583	23578583	+	678.0	f0_balb.idr	Intergenic	Intergenic	2320.0	NM_178204	319149.0	Mm.347699	NM_178204	ENSMUSG00000099583	Hist1h3d	H3-b	histone cluster 1, H3d	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106418470-1	chr9	106417970	106418970	+	678.0	f1_c57bl6.idr	Intergenic	Intergenic	-10941.0	NM_001324533	19944.0	Mm.288696	NM_009082	ENSMUSG00000048758	Rpl29	Rpl43	ribosomal protein L29	protein-coding	3.0	0.0	0.0	2.5	9.5	1.0
Merged-chr4-102521100-1	chr4	102520600	102521600	+	678.0	f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-48960.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.0	0.0	2.5	0.0	0.0	2.0
Merged-chr14-118982867-1	chr14	118982367	118983367	+	678.0	f1_c57bl6.idr	Intergenic	Intergenic	44935.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	0.0	4.0	1.0	9.5	3.0	0.0
Merged-chr6-39244181-3	chr6	39243660	39244660	+	678.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37387.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80745478-1	chr7	80744978	80745978	+	678.0	f1_c57bl6.idr	intron (NM_016721, intron 15 of 37)	intron (NM_016721, intron 15 of 37)	-56601.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	0.0	16.0	10.0	1.5	13.0	6.0
Merged-chr10-43998448-2	chr10	43997948	43998948	+	678.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172393, exon 2 of 20)	exon (NM_172393, exon 2 of 20)	6398.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116128945-2	chr6	116128445	116129445	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	64429.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91681788-2	chr6	91681288	91682288	+	678.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-2279.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46423064-1	chr18	46422564	46423564	+	678.0	f0_c57.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	42752.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	2.0	18.0	10.0	4.0	2.5	17.5
Merged-chr16-13409776-2	chr16	13409276	13410276	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153588, intron 14 of 14)	intron (NM_153588, intron 14 of 14)	-39747.0	NR_030549	100124432.0		NR_030549	ENSMUSG00000076972	Mir193b	Mir193|Mirn193b|mir-193b	microRNA 193b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-77848533-1	chr1	77848033	77849033	+	678.0	f0_balb.idr	Intergenic	Intergenic	-333445.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75551311-1	chr10	75550811	75551811	+	678.0	f0_balb.idr	3' UTR (NM_198860, exon 4 of 4)	3' UTR (NM_198860, exon 4 of 4)	9019.0	NM_198860	192734.0	Mm.259320	NM_198860	ENSMUSG00000046807	Lrrc75b	AI646023|Fam211b	leucine rich repeat containing 75B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69879933-2	chr11	69879433	69880433	+	678.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153143, exon 1 of 1)	exon (NM_153143, exon 1 of 1)	1052.0	NM_153143	216858.0	Mm.239498	NM_153143	ENSMUSG00000046731	Kctd11	AF465352|Ren	potassium channel tetramerisation domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5672851-3	chr17	5672296	5673296	+	678.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 2 of 8)	intron (NM_146073, intron 2 of 8)	-125861.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54810246-2	chr6	54809746	54810746	+	678.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6670.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64036416-2	chr13	64035961	64036961	+	678.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	52740.0	NM_008291	15487.0	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	1.5	8.5	2.0	5.5	2.0	0.0
Merged-chr12-112942565-1	chr12	112942065	112943065	+	678.0	f0_c57.idr	promoter-TSS (NM_025399)	promoter-TSS (NM_025399)	-423.0	NM_001316724	66174.0	Mm.7070	NM_025399	ENSMUSG00000002804	Nudt14	1110030M18Rik|UGPPase	nudix (nucleoside diphosphate linked moiety X)-type motif 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5477076-1	chr2	5476576	5477576	+	678.0	f1_c57bl6.idr	intron (NM_001290375, intron 2 of 10)	intron (NM_001290375, intron 2 of 10)	97686.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	8.0	14.5	2.0	8.0	33.0	0.0
Merged-chr15-59027922-1	chr15	59027422	59028422	+	678.0	f0_balb.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	54104.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83633951-2	chr7	83633451	83634451	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023377, intron 3 of 5)	intron (NM_023377, intron 3 of 5)	1934.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146983421-2	chr5	146982921	146983921	+	678.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19566.0	NM_001359467	76366.0	Mm.486234	NM_029581	ENSMUSG00000016510	Mtif3	2810012L14Rik|AI414549	mitochondrial translational initiation factor 3	protein-coding	0.0	3.5	0.0	0.0	0.0	0.0
Merged-chr2-45052999-2	chr2	45052499	45053499	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-29822.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88385884-1	chr10	88385384	88386384	+	678.0	f0_balb.idr	intron (NM_001004164, intron 1 of 20)	intron (NM_001004164, intron 1 of 20)	6472.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-8827256-2	chr5	8826756	8827756	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011075, intron 15 of 27)	intron (NM_011075, intron 15 of 27)	-28733.0	NR_152132	330031.0	Mm.389059	NR_152132		Gm5106	A230021K14|EG330031	predicted gene 5106	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50463595-2	chr9	50463095	50464095	+	678.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30930.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41804097-3	chr13	41803599	41804599	+	678.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145875, intron 4 of 6)	intron (NM_001145875, intron 4 of 6)	43389.0	NM_175417	109254.0	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54741785-2	chr14	54741285	54742285	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	-29611.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	13.0	5.5	45.0	22.5	10.5	45.0
Merged-chr19-9919782-2	chr19	9919282	9920282	+	678.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-20249.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.0	0.0	3.5	6.5	9.0	1.0
Merged-chr16-95724015-2	chr16	95723515	95724515	+	678.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21608.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40787043-1	chr9	40786543	40787543	+	678.0	f1_balb.idr	Intergenic	B3|SINE|B2	-14230.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	8.5	30.0	21.5	10.0	22.5	13.5
Merged-chr6-115519461-1	chr6	115518961	115519961	+	678.0	f0_balb.idr	Intergenic	Intergenic	-25243.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141528587-1	chr4	141528087	141529087	+	678.0	f1_c57bl6.idr	intron (NM_001347235, intron 1 of 14)	B1F2|SINE|Alu	10010.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	9.0	3.5	22.5	4.5	5.5	9.0
Merged-chr4-148065785-2	chr4	148065285	148066285	+	678.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22279.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80207861-1	chr17	80207361	80208361	+	678.0	f0_balb.idr	promoter-TSS (NR_036615)	promoter-TSS (NR_036615)	-556.0	NM_001195485	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-85056399-1	chr16	85055899	85056899	+	678.0	f0_balb.idr	exon (NM_001198824, exon 6 of 17)	exon (NM_001198824, exon 6 of 17)	84188.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-125201856-3	chr4	125201361	125202361	+	678.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73980.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-37180399-2	chr3	37179899	37180899	+	678.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2486.0	NR_153188	102639848.0	Mm.424479	NR_153188		Gm12532	-	predicted gene 12532	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154158735-2	chr4	154158235	154159235	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151647, intron 3 of 3)	intron (NR_151647, intron 3 of 3)	1949.0	NR_151647	67808.0	Mm.288737	NM_026388	ENSMUSG00000029030	Tprgl	1200015A19Rik|Svap30|Tprg1l|mover	transformation related protein 63 regulated like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120352334-1	chr2	120351834	120352834	+	678.0	f1_c57bl6.idr	intron (NM_178851, intron 1 of 24)	intron (NM_178851, intron 1 of 24)	799.0	NR_027618	269338.0	Mm.246131	NM_147153	ENSMUSG00000027291	Vps39	A230065P22Rik|AW743070|Vam6|Vam6P|mVam6	VPS39 HOPS complex subunit	protein-coding	15.0	8.5	23.0	11.5	19.5	23.5
Merged-chr19-47282221-2	chr19	47281657	47282657	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164717, intron 9 of 13)	intron (NM_001164717, intron 9 of 13)	-8568.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	7.5	22.5	47.5	0.5	9.0	23.0
Merged-chr1-135732507-2	chr1	135732007	135733007	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007791, intron 1 of 5)	intron (NM_007791, intron 1 of 5)	3340.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-55908466-2	chr7	55907924	55908924	+	678.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164661, exon 23 of 32)	exon (NM_001164661, exon 23 of 32)	54069.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	13.5	28.5	9.5	13.5	28.5	21.0
Merged-chr3-108112363-1	chr3	108111863	108112863	+	678.0	f0_balb.idr	intron (NM_010306, intron 6 of 8)	intron (NM_010306, intron 6 of 8)	19297.0	NM_008141	14686.0	Mm.439652	NM_008141	ENSMUSG00000009108	Gnat2	AW490837|Gnat-2|Gt-2|Tcalpha	guanine nucleotide binding protein, alpha transducing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123937971-1	chr5	123937471	123938471	+	678.0	f1_balb.idr	intron (NM_001134767, intron 3 of 12)	intron (NM_001134767, intron 3 of 12)	7282.0	NM_001134767	208908.0	Mm.243679	NM_001134767	ENSMUSG00000061882	Ccdc62	AI661708|G1-485-3|Gm150|repro29	coiled-coil domain containing 62	protein-coding	1.5	0.0	2.5	6.5	4.5	1.0
Merged-chr7-45002572-1	chr7	45002072	45003072	+	678.0	f1_balb.idr	TTS (NM_001008422)	TTS (NM_001008422)	4924.0	NM_016849	54131.0	Mm.3960	NM_016849	ENSMUSG00000003184	Irf3	C920001K05Rik|IRF-3	interferon regulatory factor 3	protein-coding	0.0	0.0	4.0	0.0	0.0	4.0
Merged-chr12-108940191-2	chr12	108939691	108940691	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	45919.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35077560-1	chr17	35077060	35078060	+	678.0	f1_c57bl6.idr	intron (NM_027366, intron 1 of 2)	intron (NM_027366, intron 1 of 2)	618.0	NM_027366	70274.0	Mm.250491	NM_027366	ENSMUSG00000013766	Ly6g6e	2310011I02Rik|G6e	lymphocyte antigen 6 complex, locus G6E	protein-coding	51.5	57.0	68.5	21.5	52.5	45.5
Merged-chr3-8995408-2	chr3	8994915	8995915	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	8789.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	1.0	0.5	0.0	1.0	3.0	1.0
Merged-chr10-63335220-2	chr10	63334720	63335720	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159589, intron 2 of 7)	B3|SINE|B2	3815.0	NM_019812	93759.0	Mm.351459	NM_019812	ENSMUSG00000020063	Sirt1	AA673258|SIR2L1|Sir2|Sir2a|Sir2alpha	sirtuin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67953914-2	chr7	67953414	67954414	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 1 of 20)	intron (NM_010513, intron 1 of 20)	1657.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-80898663-1	chr13	80898163	80899163	+	678.0	f0_balb.idr	Intergenic	Intergenic	12568.0	NR_153411	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119548753-1	chr11	119548253	119549253	+	678.0	f1_c57bl6.idr	promoter-TSS (NM_008730)	promoter-TSS (NM_008730)	123.0	NR_045099	100503830.0	Mm.428077	NR_045099	ENSMUSG00000087675	Gm11762	-	predicted gene 11762	ncRNA	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr16-17368197-1	chr16	17367697	17368697	+	678.0	f0_balb.idr	intron (NM_001001983, intron 7 of 54)	intron (NM_001001983, intron 7 of 54)	36826.0	NM_001331047	15160.0	Mm.6609	NM_008223	ENSMUSG00000022766	Serpind1	AA985900|AI303446|HC-II|HCII|Hcf2	serine (or cysteine) peptidase inhibitor, clade D, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-69105551-2	chr17	69105051	69106051	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355732, intron 1 of 21)	intron (NM_001355732, intron 1 of 21)	29874.0	NM_001355732	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0.0	0.0	0.0	0.0	1.5	0.0
Merged-chr18-76200919-1	chr18	76200419	76201419	+	678.0	f1_c57bl6.idr	Intergenic	Intergenic	30367.0	NR_105776	102465184.0		NR_105776	ENSMUSG00000098276	Mir6358	Gm27830|mmu-mir-6358	microRNA 6358	ncRNA	3.0	11.0	12.0	2.0	0.0	0.0
Merged-chr13-90929522-2	chr13	90929022	90930022	+	678.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	6400.0	NM_024175	66475.0	Mm.306302	NM_024175	ENSMUSG00000049517	Rps23	2410044J15Rik	ribosomal protein S23	protein-coding	2.0	1.5	1.0	1.5	12.5	4.0
Merged-chr12-3841028-2	chr12	3840528	3841528	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 2 of 22)	intron (NM_007872, intron 2 of 22)	21216.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35021977-2	chr17	35021477	35022477	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138582, intron 9 of 16)	RLTR18B|LTR|ERVK	5398.0	NM_001347347	27762.0	Mm.56895	NM_138582	ENSMUSG00000007030	Vwa7	C6orf27|D17H6S56E-3|G7c|NG37	von Willebrand factor A domain containing 7	protein-coding	0.0	0.0	0.0	0.0	2.5	0.0
Merged-chr7-98943846-2	chr7	98943346	98944346	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 12 of 14)	intron (NM_178635, intron 12 of 14)	105001.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.5	0.0	4.5	0.0	6.5	1.5
Merged-chr16-11002653-2	chr16	11002153	11003153	+	677.966675	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6245.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132601245-3	chr2	132600709	132601709	+	677.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033469, intron 1 of 3)	intron (NR_033469, intron 1 of 3)	3013.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-48998790-3	chr13	48998287	48999287	+	677.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30675.0	NR_015601	68128.0	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116570064-3	chr6	116569564	116570564	+	677.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12880.0	NM_146446	258438.0	Mm.357743	NM_146446	ENSMUSG00000050654	Olfr215	MOR119-2	olfactory receptor 215	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-164757233-2	chr1	164756733	164757733	+	677.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-39430.0	NM_019759	56429.0	Mm.28935	NM_019759	ENSMUSG00000026574	Dpt	1810032B19Rik|5033416F05Rik|EQ-1|Eq1	dermatopontin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83289759-2	chr11	83289259	83290259	+	677.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1940.0	NR_028363	613254.0	Mm.383758	NR_028363	ENSMUSG00000093483	AA465934	-	expressed sequence AA465934	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-45274765-2	chr16	45274259	45275259	+	677.833374	f0_c57.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	50422.0	NM_177584	208154.0	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	13.5	24.0	33.5	0.0	0.5	5.5
Merged-chr14-26645664-3	chr14	26645167	26646167	+	677.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007479, intron 1 of 5)	B1_Mus1|SINE|Alu	7533.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-62822454-2	chr16	62821954	62822954	+	677.833313	f1_balb.idr|f1_c57bl6.idr	exon (NM_026588, exon 2 of 2)	exon (NM_026588, exon 2 of 2)	7778.0	NM_026588	68159.0	Mm.386793	NM_026588	ENSMUSG00000047854	Stx19	A030009B12Rik	syntaxin 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67798156-3	chr18	67797648	67798648	+	677.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045376, intron 1 of 3)	intron (NR_045376, intron 1 of 3)	1795.0	NR_045376	75286.0	Mm.307315	NR_045376		4930549G23Rik	-	RIKEN cDNA 4930549G23 gene	ncRNA	23.5	31.5	13.5	7.5	6.5	5.5
Merged-chr15-87071107-3	chr15	87070633	87071633	+	677.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-473166.0	NM_001252310	106014.0	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102274147-3	chr15	102273653	102274653	+	677.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5303.0	NM_134100	106073.0	Mm.287740	NM_134100	ENSMUSG00000045665	Mfsd5	AA409375|AW556797|D15Mgi27	major facilitator superfamily domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-68732094-2	chr3	68731633	68732633	+	677.75	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29362.0	NR_153374	102639225.0	Mm.109095	NR_153374	ENSMUSG00000102936	Gm35584	-	predicted gene, 35584	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-113782418-4	chr9	113781882	113782882	+	677.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114347, intron 6 of 39)	Lx9|LINE|L1	-10948.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-54002391-2	chr17	54001891	54002891	+	677.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11760.0	NM_018751	20888.0	Mm.10108	NM_018751	ENSMUSG00000023943	Sult1c1	(PST)G|P-SULT|ST1C1|Stp2|Sult1a2|mOLFST	sulfotransferase family, cytosolic, 1C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44501913-3	chr7	44501429	44502429	+	677.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028169)	TTS (NM_028169)	5341.0	NM_028169	75538.0	Mm.258841	NM_028169	ENSMUSG00000051113	Fam71e1	0610007G24Rik|1700021N13Rik|1700021P22Rik|GARI-L5	family with sequence similarity 71, member E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-105676576-3	chr14	105676074	105677074	+	677.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52804.0	NR_105814	102465207.0		NR_105814	ENSMUSG00000098780	Mir6390	Gm27562|mmu-mir-6390	microRNA 6390	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-17387432-2	chr19	17386932	17387932	+	677.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6611.0	NM_019437	54391.0	Mm.7013	NM_019437	ENSMUSG00000024712	Rfk	0610038L10Rik|AF031381|KOI-4	riboflavin kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17741084-3	chr16	17740584	17741584	+	677.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18137.0	NM_001040683	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-156561796-3	chr3	156561282	156562282	+	677.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040399)	promoter-TSS (NR_040399)	-12.0	NM_177274	320840.0	Mm.317293	NM_177274	ENSMUSG00000040037	Negr1	5330422G01Rik|KILON|Ntra	neuronal growth regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118081118-2	chr10	118080581	118081581	+	677.666626	f0_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-60706.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	134.0	249.5	189.5	134.0	212.5	161.0
Merged-chr10-51489827-2	chr10	51489327	51490327	+	677.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1071.0	NM_001291894	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145632427-2	chr6	145631927	145632927	+	677.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16464.0	NM_009449	22147.0	Mm.270295	NM_009449	ENSMUSG00000067338	Tuba3b	M[a]7|Tuba7	tubulin, alpha 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75596767-4	chr11	75596317	75597317	+	677.641663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008850, intron 2 of 11)	B1_Mur2|SINE|Alu	3414.0	NR_110477	654359.0	Mm.439961	NR_110477		Gm12338	-	cytochrome c oxidase, subunit VIIc pseudogene	pseudo	6.0	4.5	5.5	5.0	2.5	2.0
Merged-chr14-73403556-3	chr14	73403056	73404056	+	677.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-18267.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80181246-5	chr11	80180749	80181749	+	677.533325	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2623.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	31.5	64.0	37.0	15.0	15.5	38.5
Merged-chr5-48411614-2	chr5	48411114	48412114	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199244, intron 3 of 7)	B4A|SINE|B4	16041.0	NR_045500	70592.0	Mm.437183	NR_045500	ENSMUSG00000029089	5730480H06Rik	-	RIKEN cDNA 5730480H06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87335425-2	chr6	87334925	87335925	+	677.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_054041, exon 1 of 18)	exon (NM_054041, exon 1 of 18)	350.0	NM_054041	69538.0	Mm.232525	NM_054041	ENSMUSG00000033420	Antxr1	2310008J16Rik|2810405N18Rik|Antrx1|Tem8	anthrax toxin receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118971736-2	chr11	118971236	118972236	+	677.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16445.0	NM_001359574	238011.0	Mm.244114	NM_001030291	ENSMUSG00000046697	Enpp7	Alk-SMase|Gm254	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-89684299-2	chr10	89683799	89684799	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198021, intron 1 of 17)	intron (NM_198021, intron 1 of 17)	1995.0	NM_001358843	213326.0	Mm.27651	NM_198021	ENSMUSG00000069539	Scyl2	AU015688|AW536445|BC030932|CVAK104|D10Ertd802e	SCY1-like 2 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49248094-2	chr7	49247594	49248594	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 1 of 37)	intron (NM_175272, intron 1 of 37)	1905.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-38860319-3	chr12	38859816	38860816	+	677.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347379, intron 10 of 11)	intron (NM_001347379, intron 10 of 11)	76605.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96615537-2	chr10	96615037	96616037	+	677.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1464.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-98330493-1	chr5	98329993	98330993	+	677.5	f0_balb.idr	intron (NM_001024614, intron 1 of 5)	intron (NM_001024614, intron 1 of 5)	1189.0	NM_001024614	75784.0	Mm.443240	NM_001024614	ENSMUSG00000057816	1700007G11Rik	4930428O21Rik	RIKEN cDNA 1700007G11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84840889-2	chr2	84840374	84841374	+	677.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_024497, exon 2 of 15)	exon (NM_024497, exon 2 of 15)	248.0	NM_001083809	72401.0	Mm.22716	NM_024497	ENSMUSG00000027075	Slc43a1	2610016F07Rik|AA986141|Lat3|PB39|Pov1|R00504	solute carrier family 43, member 1	protein-coding	0.0	5.0	3.0	0.0	2.0	2.0
Merged-chr18-75906118-2	chr18	75905601	75906601	+	677.5	f0_c57.idr|f1_c57bl6.idr	intron (NM_145356, intron 2 of 4)	intron (NM_145356, intron 2 of 4)	85923.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	11.5	15.0	14.5	0.0	2.5	0.0
Merged-chr14-77876605-2	chr14	77876062	77877062	+	677.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1645.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	43.0	87.0	91.0	2.5	4.0	5.5
Merged-chr2-92609152-2	chr2	92608652	92609652	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356552, intron 2 of 3)	intron (NM_001356552, intron 2 of 3)	8035.0	NM_001356553	76969.0	Mm.38021	NM_023850	ENSMUSG00000027221	Chst1	2610008E20Rik|AW125896|C6ST|GST-1|Gst1|KS6ST|KSGAL6ST|KSST	carbohydrate (keratan sulfate Gal-6) sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37857273-2	chr13	37856773	37857773	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	29880.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	3.5	0.0	2.0	0.0	0.5
Merged-chr2-30965414-2	chr2	30964914	30965914	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144884, intron 2 of 4)	intron (NM_144884, intron 2 of 4)	2504.0	NM_144884	30931.0	Mm.154994	NM_144884	ENSMUSG00000026849	Tor1a	DQ2|Dyt1|torsinA	torsin family 1, member A (torsin A)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-83539074-2	chr9	83538579	83539579	+	677.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9259.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0.5	12.0	6.0	2.5	10.0	15.0
Merged-chr16-25060324-2	chr16	25059824	25060824	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040374, intron 1 of 2)	intron (NR_040374, intron 1 of 2)	685.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121754062-2	chr11	121753562	121754562	+	677.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51635.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117916635-3	chr4	117916173	117917173	+	677.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1674.0	NM_146152	230673.0	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	6.5	5.5	2.0	5.0	0.0	8.0
Merged-chr4-148149430-2	chr4	148148930	148149930	+	677.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_015797, exon 2 of 6)	exon (NM_015797, exon 2 of 6)	-2434.0	NR_105989	102465619.0		NR_105989	ENSMUSG00000099043	Mir7022	Gm27291|mmu-mir-7022	microRNA 7022	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75018202-2	chr14	75017702	75018702	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198642, intron 1 of 13)	intron (NM_198642, intron 1 of 13)	2175.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35679674-2	chr8	35679174	35680174	+	677.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081279)	TTS (NM_001081279)	-90654.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	7.0	28.0	14.5	7.0	18.5	19.5
Merged-chr10-24333000-2	chr10	24332500	24333500	+	677.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109483.0	NM_021509	59012.0	Mm.285934	NM_021509	ENSMUSG00000020000	Moxd1	3230402N08Rik|MNCb-5203	monooxygenase, DBH-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47267420-2	chr19	47266920	47267920	+	677.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164717, exon 14 of 14)	exon (NM_001164717, exon 14 of 14)	6169.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180765570-2	chr1	180765070	180766070	+	677.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39527.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-66438519-2	chr18	66438019	66439019	+	677.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-20085.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53068710-2	chr4	53068210	53069210	+	677.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013454, exon 28 of 50)	exon (NM_013454, exon 28 of 50)	56830.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-79246469-3	chr18	79245998	79246998	+	677.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137107.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60821788-2	chr18	60821288	60822288	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011552, intron 17 of 24)	intron (NM_011552, intron 17 of 24)	9712.0	NR_039567	100628611.0		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.0	0.0	2.5	0.0	0.5	2.0
Merged-chr15-97948255-2	chr15	97947755	97948755	+	677.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15974.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80174222-2	chr17	80173722	80174722	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176963, intron 4 of 6)	MLT1G3|LTR|ERVL-MaLR	33083.0	NM_001195486	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-53428939-3	chr10	53428439	53429439	+	677.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19057.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53260553-2	chr19	53260053	53261053	+	677.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5348.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89849433-2	chr3	89848933	89849933	+	677.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172530, exon 3 of 6)	exon (NM_172530, exon 3 of 6)	18063.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-6881586-2	chr6	6881086	6882086	+	677.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010056, exon 1 of 3)	exon (NM_010056, exon 1 of 3)	482.0	NM_198854	13395.0	Mm.4873	NM_010056	ENSMUSG00000029755	Dlx5	AI385752	distal-less homeobox 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75087360-2	chr8	75086860	75087860	+	677.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6258.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-93272763-2	chr15	93272263	93273263	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346785, intron 1 of 7)	intron (NM_001346785, intron 1 of 7)	2416.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143784222-1	chr7	143783722	143784722	+	677.5	f0_balb.idr	5' UTR (NM_175534, exon 1 of 2)	5' UTR (NM_175534, exon 1 of 2)	278.0	NM_175534	244238.0	Mm.183561	NM_175534	ENSMUSG00000048965	Mrgpre	C130069N09Rik|Ebrt3|Mgrf|MrgE	MAS-related GPR, member E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53369250-2	chr19	53368750	53369750	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008543, intron 3 of 5)	intron (NM_001008543, intron 3 of 5)	20791.0	NM_001356986	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-149279806-2	chr5	149279306	149280306	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009663, intron 3 of 4)	intron (NM_009663, intron 3 of 4)	14802.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166303092-2	chr2	166302592	166303592	+	677.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	29184.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5252011-2	chr17	5251511	5252511	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 5 of 19)	intron (NM_001085355, intron 5 of 19)	166756.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112877786-2	chr12	112877286	112878286	+	677.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-16870.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34129159-1	chr10	34128659	34129659	+	677.5	f0_balb.idr	Intergenic	MIRb|SINE|MIR	-1187.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-37097590-1	chr6	37097090	37098090	+	677.5	f0_balb.idr	exon (NM_001081206, exon 4 of 34)	exon (NM_001081206, exon 4 of 34)	202386.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57257786-2	chr16	57257286	57258286	+	677.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B2|LTR|ERVK	-26320.0	NM_001358433	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91633829-2	chr16	91633365	91634365	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357351, intron 11 of 21)	intron (NM_001357351, intron 11 of 21)	13107.0	NM_010256	14450.0	Mm.4505	NM_010256	ENSMUSG00000022962	Gart	Gaps|Prgs	phosphoribosylglycinamide formyltransferase	protein-coding	4.5	28.5	10.0	4.0	16.0	7.0
Merged-chr17-31679661-2	chr17	31679161	31680161	+	677.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013501, exon 3 of 4)	exon (NM_013501, exon 3 of 4)	1730.0	NM_001278570	12954.0	Mm.1228	NM_013501	ENSMUSG00000024041	Cryaa	Acry-1|Crya-1|Crya1|DAcry-1|lop18	crystallin, alpha A	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr2-32924016-2	chr2	32923516	32924516	+	677.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_146119, exon 14 of 14)	exon (NM_146119, exon 14 of 14)	37239.0	NM_199302	227738.0	Mm.248037	NM_199302	ENSMUSG00000026792	Lrsam1	-	leucine rich repeat and sterile alpha motif containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122019444-2	chr3	122018944	122019944	+	677.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1-int|LTR|ERVL-MaLR	-25016.0	NM_007378	11304.0	Mm.3918	NM_007378	ENSMUSG00000028125	Abca4	AW050280|Abc10|Abcr|D430003I15Rik|RmP	ATP-binding cassette, sub-family A (ABC1), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80638597-2	chr7	80638094	80639094	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040343, intron 2 of 4)	intron (NR_040343, intron 2 of 4)	2577.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	0.0	0.0	4.0	0.0	3.5	0.0
Merged-chr8-115635500-1	chr8	115635000	115636000	+	677.5	f0_balb.idr	Intergenic	Intergenic	71394.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113099773-2	chr12	113099273	113100273	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346696, intron 1 of 19)	intron (NM_001346696, intron 1 of 19)	1495.0	NM_054081	116870.0	Mm.212577	NM_054081	ENSMUSG00000021144	Mta1	-	metastasis associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134160241-1	chr4	134159741	134160741	+	677.5	f0_c57.idr	intron (NM_144527, intron 3 of 13)	RLTR4_MM-int|LTR|ERV1	26844.0	NM_144527	70012.0	Mm.26542	NM_144527	ENSMUSG00000037443	Cep85	2410030J07Rik|AI173272|AI173504|Ccdc21	centrosomal protein 85	protein-coding	6.5	9.5	1.0	4.0	1.5	0.5
Merged-chr7-81333514-2	chr7	81333014	81334014	+	677.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008803, exon 22 of 22)	exon (NM_008803, exon 22 of 22)	11720.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98769703-2	chr11	98769203	98770203	+	677.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001313983)	TTS (NM_001313983)	5674.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24207306-2	chr17	24206796	24207796	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010947, intron 4 of 5)	intron (NM_010947, intron 4 of 5)	-1734.0	NM_001163850	224617.0	Mm.301585	NM_173186	ENSMUSG00000036473	Tbc1d24	9630033P11|C530046L02Rik|mKIAA1171	TBC1 domain family, member 24	protein-coding	0.0	1.0	2.5	0.0	11.5	1.5
Merged-chr9-75433711-2	chr9	75433211	75434211	+	677.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-7813.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92724712-2	chr16	92724212	92725212	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-27383.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148713688-2	chr4	148713178	148714178	+	677.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	70361.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	2.0	18.5	3.0	2.0	0.5	8.0
Merged-chr5-127605414-2	chr5	127604914	127605914	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133895, intron 2 of 7)	intron (NM_133895, intron 2 of 7)	11978.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120071725-2	chr11	120071225	120072225	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009734, intron 12 of 25)	intron (NM_009734, intron 12 of 25)	15102.0	NM_009734	12009.0	Mm.2556	NM_009734	ENSMUSG00000039781	Cep131	AZ1|Azi|Azi1	centrosomal protein 131	protein-coding	3.0	0.0	0.0	1.5	8.0	0.0
Merged-chr17-78304143-2	chr17	78303643	78304643	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 5 of 16)	MIR|SINE|MIR	103895.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25507841-2	chr9	25507341	25508341	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	L1ME3E|LINE|L1	26244.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-177065898-2	chr1	177065398	177066398	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011785, intron 8 of 12)	intron (NM_011785, intron 8 of 12)	182869.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-38049853-3	chr1	38049369	38050369	+	677.477783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198303, intron 21 of 23)	intron (NM_198303, intron 21 of 23)	51859.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34871715-3	chr13	34871194	34872194	+	677.477783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3800.0	NM_013830	19134.0	Mm.10027	NM_013830	ENSMUSG00000021413	Prpf4b	2610037H07|Prp4|Prp4k|Prpk|cbp143	pre-mRNA processing factor 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-65815366-2	chr16	65814855	65815855	+	677.458374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028572)	promoter-TSS (NM_028572)	-278.0	NM_028572	73569.0	Mm.25670	NM_028572	ENSMUSG00000091243	Vgll3	1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2	vestigial like family member 3	protein-coding	0.0	0.0	3.0	0.0	0.0	0.0
Merged-chr11-98024138-2	chr11	98023638	98024638	+	677.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1511.0	NM_001282978	12295.0	Mm.41252	NM_031173	ENSMUSG00000020882	Cacnb1	CAB1|Cchb1|Cchlb1	calcium channel, voltage-dependent, beta 1 subunit	protein-coding	2.0	21.0	4.5	2.0	17.5	6.5
Merged-chr12-100499711-3	chr12	100499198	100500198	+	677.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 2 of 19)	intron (NM_001033213, intron 2 of 19)	21124.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63424923-3	chr14	63424419	63425419	+	677.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7732.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-3235424-2	chr16	3234932	3235932	+	677.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TACTG)n|Simple_repeat|Simple_repeat	-356966.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83815771-2	chr11	83815271	83816271	+	677.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35098.0	NM_001291268	21410.0	Mm.7226	NM_009330	ENSMUSG00000020679	Hnf1b	HNF-1-beta|HNF-1B|HNF-1Beta|Hnf1beta|LFB3|Tcf-2|Tcf2|vHNF1	HNF1 homeobox B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73524112-2	chr7	73523612	73524612	+	677.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	17634.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-94520744-2	chr15	94520244	94521244	+	677.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22763.0	NM_172437	78895.0	Mm.34344	NM_172437	ENSMUSG00000033356	Pus7l	3000003F02Rik	pseudouridylate synthase 7-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-159841732-2	chr3	159841232	159842232	+	677.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356350, intron 1 of 12)	intron (NM_001356350, intron 1 of 12)	2082.0	NM_001356350	68151.0	Mm.6766	NM_026582	ENSMUSG00000028173	Wls	5031439A09Rik|AI173978|AI987742|EVI|Gpr177	wntless WNT ligand secretion mediator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-23042399-2	chr2	23041899	23042899	+	677.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-2158.0	NM_145994	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88627539-3	chr6	88626987	88627987	+	677.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001278671)	promoter-TSS (NM_001278671)	-39.0	NM_001278671	74589.0	Mm.196226	NM_029013	ENSMUSG00000033182	Kbtbd12	4833415F11Rik|4933428M03Rik|Klhdc6	kelch repeat and BTB (POZ) domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27704045-3	chr2	27703571	27704571	+	677.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-5221.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-48962109-1	chr7	48961609	48962609	+	677.333313	f0_balb.idr	intron (NM_001111016, intron 1 of 38)	intron (NM_001111016, intron 1 of 38)	3036.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-140902570-3	chr4	140902055	140903055	+	677.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3805.0	NM_008812	18600.0	Mm.2296	NM_008812	ENSMUSG00000028927	Padi2	Pdi|Pdi2|mKIAA0994	peptidyl arginine deiminase, type II	protein-coding	3.0	3.0	0.0	4.5	6.5	0.0
Merged-chr19-46516043-2	chr19	46515543	46516543	+	677.333313	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_053100, exon 6 of 6)	3' UTR (NM_053100, exon 6 of 6)	14395.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-100490962-3	chr10	100490468	100491468	+	677.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146009, intron 4 of 52)	intron (NM_146009, intron 4 of 52)	2679.0	NM_146009	216274.0	Mm.229114	NM_146009	ENSMUSG00000019971	Cep290	BC004690|Nphp6|b2b1454Clo|b2b1752Clo	centrosomal protein 290	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66511017-3	chr9	66510466	66511466	+	677.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175206, exon 2 of 2)	3' UTR (NM_175206, exon 2 of 2)	3627.0	NM_175206	74165.0	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144603753-1	chr3	144603253	144604253	+	677.333313	f0_balb.idr	Intergenic	Intergenic	33326.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13823629-4	chr10	13823129	13824129	+	677.321411	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025446, intron 2 of 5)	RSINE1|SINE|B4	45328.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141993314-2	chr4	141992814	141993814	+	677.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 2 of 31)	intron (NM_177868, intron 2 of 31)	10322.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-39695523-4	chr8	39695043	39696043	+	677.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-52865.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.0	5.0	3.0	0.5	1.0	0.0
Merged-chr2-62640047-3	chr2	62639529	62640529	+	677.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164477, intron 1 of 14)	intron (NM_001164477, intron 1 of 14)	6226.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71333760-2	chr8	71333260	71334260	+	677.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001142323, exon 13 of 39)	exon (NM_001142323, exon 13 of 39)	-33088.0	NM_001145780	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	1.0	0.0	1.5	0.0	0.0	2.5
Merged-chr19-6292776-2	chr19	6292276	6293276	+	677.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	-13681.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-60962829-2	chr19	60962324	60963324	+	677.25	f0_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 1 of 15)	MTEb|LTR|ERVL-MaLR	73075.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	7.0	8.0	4.5	0.0	11.0	6.0
Merged-chr17-7170800-2	chr17	7170300	7171300	+	677.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011299, intron 1 of 20)	intron (NM_011299, intron 1 of 20)	685.0	NM_011299	20112.0	Mm.268383	NM_011299	ENSMUSG00000023809	Rps6ka2	90kDa|D17Wsu134e|Rps6ka-rs1|Rsk3|p90rsk|pp90rsk	ribosomal protein S6 kinase, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99585092-2	chr15	99584591	99585591	+	677.25	f0_balb.idr|f1_balb.idr	TTS (NM_009699)	TTS (NM_009699)	-5937.0	NM_009701	11830.0	Mm.45580	NM_009701	ENSMUSG00000044217	Aqp5	-	aquaporin 5	protein-coding	0.0	1.5	0.5	0.0	0.0	0.0
Merged-chr11-98707272-2	chr11	98706772	98707772	+	677.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_011869, exon 21 of 26)	exon (NM_011869, exon 21 of 26)	5959.0	NM_009971	12985.0	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103485813-2	chr2	103485296	103486296	+	677.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009804)	promoter-TSS (NM_009804)	-643.0	NM_009804	12359.0	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	8.0	29.0	10.5	7.5	4.0	23.5
Merged-chr7-49002444-2	chr7	49001944	49002944	+	677.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	43371.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69847343-2	chr11	69846843	69847843	+	677.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_023564, exon 3 of 8)	exon (NM_023564, exon 3 of 8)	699.0	NR_033133	70310.0	Mm.28874	NM_023564	ENSMUSG00000019461	Plscr3	2210403O21Rik|2610037N06Rik|ESTM3|X83310	phospholipid scramblase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-67975152-3	chr11	67974653	67975653	+	677.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001361352)	TTS (NM_001361352)	8695.0	NM_018768	55943.0	Mm.3973	NM_018768	ENSMUSG00000020903	Stx8	0610007H08Rik|1110002H11Rik|4930571E13Rik|CARB	syntaxin 8	protein-coding	0.0	7.0	0.0	7.0	3.5	0.0
Merged-chr12-89291436-4	chr12	89290930	89291930	+	677.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198587, intron 7 of 19)	intron (NM_001198587, intron 7 of 19)	338040.0	NM_172544	18191.0	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84935797-2	chr17	84935300	84936300	+	677.200012	f0_balb.idr|f0_c57.idr	intron (NR_027929, intron 2 of 3)	intron (NR_027929, intron 2 of 3)	-20941.0	NM_001159497	19043.0	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120934069-3	chr4	120933587	120934587	+	677.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005788, intron 5 of 5)	intron (NM_001005788, intron 5 of 5)	-9082.0	NM_001160043	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	0.0	17.5	2.0	3.5	20.0	3.5
Merged-chr9-101037533-3	chr9	101036879	101037879	+	677.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2495.0	NM_025835	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-118473723-3	chr5	118473226	118474226	+	677.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86993.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38711663-2	chr6	38711163	38712163	+	677.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 12 of 14)	intron (NM_010433, intron 12 of 14)	48594.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70650482-2	chr8	70649982	70650982	+	677.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023217, exon 5 of 5)	3' UTR (NM_023217, exon 5 of 5)	9256.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	7.0	0.0	4.5	2.0	0.0	2.5
Merged-chr7-27574238-2	chr7	27573722	27574722	+	677.166626	f0_balb.idr|f1_balb.idr	intron (NM_175107, intron 7 of 9)	intron (NM_175107, intron 7 of 9)	13746.0	NM_001122767	66367.0	Mm.29831	NM_175107	ENSMUSG00000049643	2310022A10Rik	-	RIKEN cDNA 2310022A10 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-146701738-2	chr1	146701238	146702238	+	677.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_153539, exon 4 of 8)	exon (NM_153539, exon 4 of 8)	204051.0	NM_001145807	215378.0	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102020500-2	chr7	102020000	102021000	+	677.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 8 of 8)	intron (NM_029211, intron 8 of 8)	-2345.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61418366-2	chr10	61417866	61418866	+	677.125	f1_balb.idr|f1_c57bl6.idr	exon (NM_013611, exon 1 of 3)	exon (NM_013611, exon 1 of 3)	394.0	NM_013611	18119.0	Mm.57195	NM_013611	ENSMUSG00000037171	Nodal	Tg.413d	nodal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55814360-5	chr16	55813828	55814828	+	677.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159394, exon 10 of 12)	exon (NM_001159394, exon 10 of 12)	7810.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9130336-2	chr4	9129836	9130836	+	677.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138957.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64867841-3	chr1	64867371	64868371	+	677.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 5 of 7)	intron (NM_001039493, intron 5 of 7)	88953.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29348953-2	chr6	29348453	29349453	+	677.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285412, intron 1 of 6)	intron (NM_001285412, intron 1 of 6)	847.0	NM_007594	12321.0	Mm.392075	NM_007594	ENSMUSG00000029767	Calu	9530075H20Rik	calumenin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-77249943-3	chr2	77249448	77250448	+	677.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175465, intron 1 of 17)	intron (NM_175465, intron 1 of 17)	30644.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24739939-1	chr17	24739439	24740439	+	677.0	f1_c57bl6.idr	intron (NM_013759, intron 2 of 4)	intron (NM_013759, intron 2 of 4)	3346.0	NM_001346668	27361.0	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	8.5	11.5	19.5	4.5	8.5	3.0
Merged-chr1-38987052-1	chr1	38986552	38987552	+	677.0	f1_balb.idr	promoter-TSS (NM_026850)	promoter-TSS (NM_026850)	-762.0	NM_026850	68833.0	Mm.28121	NM_026850	ENSMUSG00000026078	Pdcl3	1110061A19Rik|C80025|Viaf1	phosducin-like 3	protein-coding	7.0	35.5	17.0	10.0	31.0	15.5
Merged-chr11-82019024-2	chr11	82018524	82019524	+	677.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16553.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107856806-3	chr13	107856318	107857318	+	677.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	33246.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	63.5	64.5	55.5	26.5	73.5	70.5
Merged-chr3-107119092-1	chr3	107118592	107119592	+	677.0	f1_balb.idr	Intergenic	Intergenic	17525.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	30.5	45.5	35.5	8.0	12.5	25.0
Merged-chr5-121864684-1	chr5	121864184	121865184	+	677.0	f1_c57bl6.idr	exon (NM_001312908, exon 22 of 23)	exon (NM_001312908, exon 22 of 23)	15687.0	NM_001359949	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-48872907-2	chr11	48872407	48873407	+	677.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1487.0	NM_008326	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34860701-2	chr17	34860201	34861201	+	677.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008198, intron 4 of 17)	intron (NM_008198, intron 4 of 17)	1813.0	NM_001142706	14962.0	Mm.653	NM_008198	ENSMUSG00000090231	Cfb	AI195813|AI255840|B|Bf|C2|Fb|H2-Bf	complement factor B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20728321-1	chr11	20727821	20728821	+	677.0	f1_balb.idr	intron (NM_181411, intron 1 of 8)	B1_Mus1|SINE|Alu	13235.0	NM_001290545	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	3.0	3.5	2.0	0.0	0.0	10.5
Merged-chr3-126952789-1	chr3	126952289	126953289	+	677.0	f1_c57bl6.idr	intron (NM_178655, intron 14 of 24)	intron (NM_178655, intron 14 of 24)	-9403.0	NM_001034168	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	3.5	4.5	2.0	1.0	7.0	3.5
Merged-chr16-98106923-2	chr16	98106423	98107423	+	677.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-24484.0	NR_015491	320586.0	Mm.442230	NR_015491		A630089N07Rik	-	RIKEN cDNA A630089N07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6874149-2	chr4	6873649	6874649	+	677.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145711, intron 1 of 8)	intron (NM_145711, intron 1 of 8)	116574.0	NM_145711	252838.0	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-80323382-1	chr8	80322882	80323882	+	677.0	f0_balb.idr	Intergenic	Intergenic	-170663.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-53589529-2	chr6	53589031	53590031	+	677.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172728, intron 1 of 6)	intron (NM_172728, intron 1 of 6)	16157.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	26.5	54.5	20.0	32.5	34.0	39.0
Merged-chr17-35872593-2	chr17	35872093	35873093	+	677.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146710, intron 2 of 3)	intron (NM_001146710, intron 2 of 3)	5978.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103228845-1	chr3	103228345	103229345	+	677.0	f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-50448.0	NM_001079830	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	3.5	16.0	9.0	1.0	13.5	6.0
Merged-chr11-75581986-1	chr11	75581486	75582486	+	677.0	f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-6093.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	0.0	1.0	0.0	0.0	0.0	1.5
Merged-chr14-103350188-3	chr14	103349672	103350672	+	677.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3372.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-159935245-2	chr3	159934745	159935745	+	677.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026582, exon 12 of 12)	3' UTR (NM_026582, exon 12 of 12)	95595.0	NM_001356350	68151.0	Mm.6766	NM_026582	ENSMUSG00000028173	Wls	5031439A09Rik|AI173978|AI987742|EVI|Gpr177	wntless WNT ligand secretion mediator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-59491829-1	chr16	59491329	59492329	+	677.0	f0_balb.idr	exon (NM_025910, exon 10 of 10)	exon (NM_025910, exon 10 of 10)	20054.0	NM_025910	67014.0	Mm.289150	NM_025910	ENSMUSG00000022724	Riox2	1810047J07Rik|2410057H13Rik|3830408E23Rik|AI449204|Mina	ribosomal oxygenase 2	protein-coding	14.5	0.5	2.0	0.0	6.5	7.0
Merged-chr4-59877232-1	chr4	59876732	59877732	+	677.0	f1_c57bl6.idr	intron (NM_172468, intron 3 of 8)	RLTR40|LTR|ERVK	37824.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	2.0	1.5	3.0	10.0	5.5	5.0
Merged-chr11-61116446-2	chr11	61115946	61116946	+	677.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24389.0	NM_021349	57916.0	Mm.265915	NM_021349	ENSMUSG00000010142	Tnfrsf13b	1200009E08Rik|Taci	tumor necrosis factor receptor superfamily, member 13b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107332597-2	chr3	107332097	107333097	+	677.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001045807, exon 1 of 2)	exon (NM_001045807, exon 1 of 2)	692.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-70183396-3	chr10	70182888	70183888	+	677.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111121, intron 7 of 8)	intron (NM_001111121, intron 7 of 8)	-21276.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-47392050-2	chr11	47391550	47392550	+	677.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-12748.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-54911488-3	chr1	54911065	54912065	+	677.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	14822.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148649954-2	chr5	148649454	148650454	+	677.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-91886.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-30031981-2	chr19	30031481	30032481	+	677.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144873, intron 1 of 15)	intron (NM_144873, intron 1 of 15)	1468.0	NM_144873	109113.0	Mm.313364	NM_144873	ENSMUSG00000024817	Uhrf2	2310065A22Rik|AI426270|AW214556|D130071B19Rik|Nirf	ubiquitin-like, containing PHD and RING finger domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23806754-2	chr18	23806254	23807254	+	677.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	B3|SINE|B2	2784.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97418995-2	chr6	97418495	97419495	+	677.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 4 of 23)	RLTR11A2|LTR|ERVK	40291.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-46825129-1	chr14	46824629	46825629	+	677.0	f0_balb.idr	Intergenic	Intergenic	-2887.0	NM_022023	63985.0	Mm.87312	NM_022023	ENSMUSG00000062014	Gmfb	3110001H22Rik|3110001O16Rik|AI851627|C79176|D14Ertd630e	glia maturation factor, beta	protein-coding	10.5	4.0	2.0	2.0	4.5	5.5
Merged-chr17-47974335-1	chr17	47973835	47974835	+	677.0	f1_c57bl6.idr	Intergenic	CpG	-49703.0	NM_001110825	74123.0	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	0.0	0.5	3.0	0.0	0.0	6.0
Merged-chr7-141275982-2	chr7	141275482	141276482	+	677.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114322, intron 3 of 14)	intron (NM_001114322, intron 3 of 14)	804.0	NM_028069	72040.0	Mm.29080	NM_028069	ENSMUSG00000025497	Cdhr5	1810074H01Rik|AI481143|Mucdhl|Mupcdh	cadherin-related family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-49127768-2	chr2	49127268	49128268	+	677.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029924, intron 5 of 16)	intron (NM_029924, intron 5 of 16)	-118132.0	NM_001290656	109241.0	Mm.440436	NM_029924	ENSMUSG00000036792	Mbd5	9430004D19Rik|AA536666|AI426407|C030040A15Rik|Gm1630	methyl-CpG binding domain protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121260557-3	chr11	121260050	121261050	+	677.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080932, intron 1 of 8)	intron (NM_001080932, intron 1 of 8)	563.0	NM_001080932	68837.0	Mm.209750	NM_001080932	ENSMUSG00000039275	Foxk2	1110054H05Rik|5730434B08Rik|6230415M23Rik|ILF|Ilf1	forkhead box K2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27345610-2	chr14	27345110	27346110	+	677.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	9573.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79595341-2	chr10	79594841	79595841	+	677.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8205.0	NM_011583	21830.0	Mm.89197	NM_011583	ENSMUSG00000020317	Theg	-	testicular haploid expressed gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99748884-2	chr12	99748384	99749384	+	677.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030172, intron 5 of 5)	intron (NM_030172, intron 5 of 5)	-120910.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-45960180-2	chr11	45959677	45960677	+	677.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-4674.0	NM_001080969	66628.0	Mm.269083	NM_001080969	ENSMUSG00000011254	Thg1l	-	tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)	protein-coding	12.5	1.5	4.0	0.5	13.0	10.5
Merged-chr14-78765240-1	chr14	78764740	78765740	+	677.0	f0_balb.idr	Intergenic	Intergenic	-32511.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.0	6.0	9.5	3.0	4.5	10.5
Merged-chr5-72181224-2	chr5	72180724	72181724	+	677.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13035.0	NM_001356614	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98542345-2	chr7	98541845	98542845	+	677.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	48123.0	NM_001113379	434215.0	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-43415498-2	chr8	43414998	43415998	+	677.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-108489.0	NM_009556	22702.0	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49244473-2	chr13	49243973	49244973	+	677.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028340, intron 1 of 4)	intron (NM_028340, intron 1 of 4)	3821.0	NM_001360772	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-4090528-2	chr6	4090028	4091028	+	677.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR34B_MM|LTR|ERVK	-3598.0	NM_009748	12068.0	Mm.286457	NM_009748	ENSMUSG00000032757	Bet1	AW555236|Bet-1	Bet1 golgi vesicular membrane trafficking protein	protein-coding	1.5	2.0	0.0	0.0	11.0	0.5
Merged-chr15-64087839-2	chr15	64087339	64088339	+	677.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001276462, exon 28 of 28)	3' UTR (NM_001276462, exon 28 of 28)	-27391.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	26.5	38.5	30.5	19.5	36.0	29.0
Merged-chr3-127770031-1	chr3	127769531	127770531	+	677.0	f1_c57bl6.idr	intron (NM_027808, intron 1 of 13)	intron (NM_027808, intron 1 of 13)	10496.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	41.0	39.0	40.0	42.5	152.5	70.5
Merged-chr14-61041403-1	chr14	61040903	61041903	+	677.0	f1_balb.idr	intron (NM_013869, intron 1 of 9)	intron (NM_013869, intron 1 of 9)	-3416.0	NM_001164155	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	0.5	2.0	0.5	4.0	2.0	0.0
Merged-chr5-17882081-2	chr5	17881581	17882581	+	677.0	f0_balb.idr|f0_c57.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	6878.0	NM_001159558	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-59186524-2	chr6	59186024	59187024	+	677.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22346.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32497142-2	chr2	32496642	32497642	+	677.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-38217.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-20982926-2	chr5	20982426	20983426	+	677.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-31104.0	NM_001080977	242860.0	Mm.254286	NM_001080977	ENSMUSG00000039968	Rsbn1l	8430412F05Rik|AI447441|C330002G24Rik	round spermatid basic protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-121141351-2	chr2	121140851	121141851	+	677.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177846)	promoter-TSS (NM_177846)	-653.0	NM_177846	329504.0	Mm.219449	NM_177846	ENSMUSG00000074890	Lcmt2	D330024M17|Tyw4	leucine carboxyl methyltransferase 2	protein-coding	0.0	1.5	3.0	0.0	18.5	18.0
Merged-chr19-9100807-3	chr19	9100318	9101318	+	677.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12862.0	NM_011681	22287.0	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153895533-2	chr1	153895033	153896033	+	677.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3887.0	NM_178244	240819.0	Mm.453236	NM_178244	ENSMUSG00000047053	Teddm1a	Epdd1|Teddm1|e9-1	transmembrane epididymal protein 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27267393-2	chr2	27266893	27267893	+	677.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 28 of 29)	intron (NR_133905, intron 28 of 29)	-20090.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32363996-1	chr17	32363496	32364496	+	677.0	f0_c57.idr	intron (NR_033525, intron 4 of 10)	intron (NR_033525, intron 4 of 10)	-13419.0	NM_017476	54194.0	Mm.281005	NM_017476	ENSMUSG00000002625	Akap8l	HAP95|Nakap95	A kinase (PRKA) anchor protein 8-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35092618-2	chr17	35092119	35093119	+	677.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178592, intron 4 of 19)	B3|SINE|B2	3328.0	NM_178592	193742.0	Mm.43745	NM_178592	ENSMUSG00000007036	Abhd16a	AI326074|Bat-5|Bat5|D17H6S82E|NG26	abhydrolase domain containing 16A	protein-coding	0.5	9.0	0.0	0.5	2.0	1.0
Merged-chr10-121591712-2	chr10	121591212	121592212	+	677.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359618, intron 24 of 24)	intron (NM_001359618, intron 24 of 24)	-4918.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	34.0	47.5	56.0	1.0	11.0	16.5
Merged-chr5-27792540-2	chr5	27792042	27793042	+	677.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_018878)	promoter-TSS (NM_018878)	-992.0	NM_018878	55982.0	Mm.277190	NM_018878	ENSMUSG00000002221	Paxip1	D5Ertd149e|PTIP	PAX interacting (with transcription-activation domain) protein 1	protein-coding	11.5	17.5	27.0	17.0	34.5	17.0
Merged-chr1-150391276-2	chr1	150390776	150391776	+	677.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357579, intron 1 of 13)	B1F|SINE|Alu	-1562.0	NM_133780	108989.0	Mm.174256	NM_133780	ENSMUSG00000006005	Tpr	2610029M07Rik|C77892	translocated promoter region, nuclear basket protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84035104-1	chr17	84034604	84035604	+	677.0	f0_balb.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	36552.0	NR_130994	78148.0	Mm.243918	NR_130994		8430430B14Rik	-	RIKEN cDNA 8430430B14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25072864-2	chr7	25072364	25073364	+	676.916626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008168)	promoter-TSS (NM_008168)	-495.0	NM_001360067	14809.0	Mm.2879	NM_008168	ENSMUSG00000003378	Grik5	GluK5|GluRgamma2|KA2	glutamate receptor, ionotropic, kainate 5 (gamma 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-126599606-4	chr3	126599099	126600099	+	676.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	2648.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	11.0	48.0	18.5	32.0	30.0	29.0
Merged-chr3-51250367-2	chr3	51249867	51250867	+	676.833313	f1_balb.idr|f1_c57bl6.idr	exon (NM_009834, exon 3 of 3)	exon (NM_009834, exon 3 of 3)	25920.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-28180242-3	chr2	28179734	28180734	+	676.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR24|LTR|ERV1	-12859.0	NM_001038613	56177.0	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-38053640-2	chr19	38053183	38054183	+	676.775024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1301.0	NM_028293	74107.0	Mm.9916	NM_028293	ENSMUSG00000024989	Cep55	1200008O12Rik|2700032M20Rik	centrosomal protein 55	protein-coding	31.0	24.5	8.0	16.5	2.0	1.0
Merged-chr10-67711134-4	chr10	67710618	67711618	+	676.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139159.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94352499-2	chr10	94351999	94352999	+	676.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	ORR1B1|LTR|ERVL-MaLR	40550.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-81099443-3	chr3	81098943	81099943	+	676.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	RSINE1|SINE|B4	63027.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	20.5	17.0	5.5	22.5	21.0	7.0
Merged-chr4-40782105-2	chr4	40781605	40782605	+	676.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24220.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84894634-2	chr8	84894168	84895168	+	676.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008097)	promoter-TSS (NM_008097)	-747.0	NM_008097	270076.0	Mm.2475	NM_008097	ENSMUSG00000003809	Gcdh	9030411L18|AI266902|D17825|GCD	glutaryl-Coenzyme A dehydrogenase	protein-coding	0.5	1.0	0.0	1.5	1.0	1.0
Merged-chr12-86885615-2	chr12	86885115	86886115	+	676.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145836)	promoter-TSS (NM_145836)	-801.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55777728-2	chr16	55777228	55778228	+	676.700012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	44410.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17528482-3	chr10	17527989	17528989	+	676.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-194739.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68654088-3	chr11	68653599	68654599	+	676.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA7|LINE|L1	-37816.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27563639-3	chr15	27563151	27564151	+	676.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020332, intron 5 of 11)	intron (NM_020332, intron 5 of 11)	-7843.0	NR_106065	102466808.0		NR_106065	ENSMUSG00000098416	Mir7117	Gm27729|mmu-mir-7117	microRNA 7117	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-74981158-3	chr7	74980660	74981660	+	676.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-49051.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-14960081-3	chr10	14959585	14960585	+	676.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	199796.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31422205-2	chr14	31421705	31422705	+	676.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	-4528.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-20590380-2	chr8	20589877	20590877	+	676.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24550.0	NM_001270553	100861668.0	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4314759-4	chr18	4314250	4315250	+	676.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38203.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97866800-3	chr3	97866232	97867232	+	676.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 1 of 46)	L3|LINE|CR1	21975.0	NM_001289702	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-31033534-3	chr8	31033049	31034049	+	676.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55978.0	NM_025869	66959.0	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding	0.0	0.0	0.0	6.5	0.0	0.5
Merged-chr18-46412124-3	chr18	46411617	46412617	+	676.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21B|LTR|ERV1	53699.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	2.5	15.5	5.5	13.5	10.0	2.5
Merged-chr7-123374389-2	chr7	123373889	123374889	+	676.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-3593.0	NM_025304	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122013196-2	chr14	122012696	122013696	+	676.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 8 of 8)	intron (NM_026861, intron 8 of 8)	-21478.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	2.5	3.5	7.0	4.5	2.5	2.0
Merged-chr13-37679594-2	chr13	37679094	37680094	+	676.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-146444.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-36832010-3	chr8	36831452	36832452	+	676.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 4 of 17)	intron (NM_001194940, intron 4 of 17)	-98898.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	6.5	20.5	3.5	0.0	22.5	2.0
Merged-chr19-7269444-2	chr19	7268944	7269944	+	676.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001320554, intron 1 of 11)	intron (NM_001320554, intron 1 of 11)	1165.0	NM_001320554	104383.0	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-47058236-2	chr7	47057736	47058736	+	676.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7596.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110477996-2	chr9	110477496	110478496	+	676.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163569, intron 1 of 20)	intron (NM_001163569, intron 1 of 20)	1002.0	NM_001163569	16578.0	Mm.42170	NM_010628	ENSMUSG00000032489	Kif9	-	kinesin family member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120821602-3	chr6	120821144	120822144	+	676.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007510, intron 1 of 8)	B3|SINE|B2	1054.0	NM_007510	11973.0	Mm.29045	NM_007510	ENSMUSG00000019210	Atp6v1e1	2410029D23Rik|Atp6e|Atp6e2|Atp6v1e|D6Ertd385e|Vma4|p31	ATPase, H+ transporting, lysosomal V1 subunit E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99099222-4	chr15	99098753	99099753	+	676.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176835)	promoter-TSS (NM_176835)	-231.0	NM_176835	72778.0	Mm.30544	NM_176835	ENSMUSG00000038009	Dnajc22	2810451A06Rik|AI506245	DnaJ heat shock protein family (Hsp40) member C22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-13214648-2	chr1	13214146	13215146	+	676.5	f0_balb.idr|f1_balb.idr	intron (NM_008678, intron 4 of 22)	intron (NM_008678, intron 4 of 22)	-87483.0	NM_001081209	383491.0	Mm.309380	NM_001081209	ENSMUSG00000042414	Prdm14	-	PR domain containing 14	protein-coding	2.0	11.0	3.5	6.5	1.5	1.5
Merged-chr11-116079575-2	chr11	116079075	116080075	+	676.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347642, exon 7 of 7)	exon (NM_001347642, exon 7 of 7)	-1614.0	NM_001009573	70450.0	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93841548-2	chr2	93841040	93842040	+	676.5	f0_balb.idr|f1_balb.idr	intron (NM_183220, intron 7 of 14)	intron (NM_183220, intron 7 of 14)	8259.0	NM_183220	329470.0	Mm.486910	NM_183220	ENSMUSG00000040272	Accs	2610203E10Rik|Phacs	1-aminocyclopropane-1-carboxylate synthase (non-functional)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86511145-2	chr6	86510645	86511645	+	676.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	15044.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58536509-2	chr16	58536009	58537009	+	676.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12256.0	NM_001357434	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	4.5	5.5	8.0	0.0	8.0	4.0
Merged-chr10-26790282-2	chr10	26789782	26790782	+	676.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	17770.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70676523-2	chr8	70676023	70677023	+	676.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015816, intron 1 of 4)	intron (NM_015816, intron 1 of 4)	3292.0	NM_015816	50783.0	Mm.248188	NM_015816	ENSMUSG00000031848	Lsm4	-	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34576792-2	chr2	34576292	34577292	+	676.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290625, intron 8 of 11)	intron (NM_001290625, intron 8 of 11)	169941.0	NM_001290626	227743.0	Mm.270866	NM_177345	ENSMUSG00000038696	Mapkap1	AI591529|D230039K05Rik|Sin1	mitogen-activated protein kinase associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-8003970-3	chr6	8003481	8004481	+	676.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037865, intron 33 of 34)	intron (NM_001037865, intron 33 of 34)	158757.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-127124546-2	chr4	127124048	127125048	+	676.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001285885)	TTS (NM_001285885)	-1495.0	NM_001099319	100039968.0	Mm.392655	NM_001099319	ENSMUSG00000070737	Tmem35b	Gm12942|Zmym6nb	transmembrane protein 35B	protein-coding	12.5	16.0	29.5	14.0	34.0	32.0
Merged-chr1-94593619-2	chr1	94593119	94594119	+	676.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-203823.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37511529-2	chr19	37511029	37512029	+	676.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38889.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119441542-2	chr8	119441042	119442042	+	676.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027950, intron 2 of 5)	intron (NM_027950, intron 2 of 5)	4380.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32711816-2	chr18	32711316	32712316	+	676.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045381, intron 4 of 4)	intron (NR_045381, intron 4 of 4)	-103567.0	NM_021367	53603.0	Mm.143716	NM_021367	ENSMUSG00000024379	Tslp	-	thymic stromal lymphopoietin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3434393-2	chr12	3433893	3434893	+	676.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270988, intron 1 of 11)	RMER15|LTR|ERVL	7536.0	NM_172421	75302.0	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2, transcriptional regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-55851491-2	chr7	55850991	55851991	+	676.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 1 of 30)	Lx8|LINE|L1	9420.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99148113-2	chr7	99147613	99148613	+	676.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-6969.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88517816-2	chr6	88517316	88518316	+	676.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016906, intron 2 of 11)	intron (NM_016906, intron 2 of 11)	984.0	NM_016906	53421.0	Mm.28375	NM_016906	ENSMUSG00000030082	Sec61a1	AA408394|AA410007|Sec61a	Sec61 alpha 1 subunit (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50988154-2	chr17	50987654	50988654	+	676.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 3 of 21)	intron (NM_028162, intron 3 of 21)	171224.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.5	1.5
Merged-chr2-166032739-2	chr2	166032239	166033239	+	676.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	Lx5|LINE|L1	40102.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89315107-2	chr6	89314607	89315607	+	676.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29382.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127264388-2	chr10	127263888	127264888	+	676.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1025.0	NM_001039000	16572.0	Mm.30355	NM_008447	ENSMUSG00000074657	Kif5a	D10Bwg0738e|Khc|Kif5|Kns|mKIAA4086	kinesin family member 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-80023548-2	chr2	80023048	80024048	+	676.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	15354.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116169227-2	chr9	116168733	116169733	+	676.5	f0_balb.idr|f1_balb.idr	intron (NM_009371, intron 1 of 7)	intron (NM_009371, intron 1 of 7)	6130.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	8.0	19.5	7.5	8.5	42.5	7.0
Merged-chr2-45233486-2	chr2	45232986	45233986	+	676.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-116044.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55511100-2	chr13	55510600	55511600	+	676.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114088, intron 2 of 12)	intron (NM_001114088, intron 2 of 12)	2346.0	NM_026131	67399.0	Mm.275648	NM_026131	ENSMUSG00000021493	Pdlim7	LMP	PDZ and LIM domain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4563144-2	chr2	4562644	4563644	+	676.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 1 of 11)	intron (NM_001177844, intron 1 of 11)	3390.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16815314-2	chr19	16814814	16815814	+	676.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34381.0	NM_173028	271564.0	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155516086-2	chr2	155515574	155516574	+	676.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1228.0	NM_144786	207182.0	Mm.41757	NM_144786	ENSMUSG00000027603	Ggt7	1110017C11Rik|6330563L03Rik|Ggtl3	gamma-glutamyltransferase 7	protein-coding	12.0	0.0	1.5	0.5	7.0	1.5
Merged-chr16-91014484-2	chr16	91013984	91014984	+	676.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152264, exon 18 of 18)	non-coding (NR_152264, exon 18 of 18)	-3176.0	NM_001164483	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59309139-2	chr10	59308639	59309639	+	676.458374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-14157.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85109457-2	chr1	85108926	85109926	+	676.416626	f0_balb.idr|f1_balb.idr	5' UTR (NM_213615, exon 1 of 7)	5' UTR (NM_213615, exon 1 of 7)	427.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41050900-4	chr4	41050399	41051399	+	676.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2763.0	NM_007473	11832.0	Mm.8728	NM_007473	ENSMUSG00000028427	Aqp7	AQP7L|AQPap	aquaporin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-42961756-4	chr4	42961245	42962245	+	676.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-8201.0	NM_026088	67317.0	Mm.478018	NM_026088	ENSMUSG00000028451	1700022I11Rik	-	RIKEN cDNA 1700022I11 gene	protein-coding	8.5	15.5	4.0	1.0	4.5	1.0
Merged-chr1-165457635-4	chr1	165457129	165458129	+	676.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028759, intron 1 of 18)	intron (NM_028759, intron 1 of 18)	2834.0	NM_028759	74106.0	Mm.227605	NM_028759	ENSMUSG00000026571	Dcaf6	1200006M05Rik|Iqwd1|PC326	DDB1 and CUL4 associated factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106659967-2	chr11	106659467	106660467	+	676.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001032378, intron 13 of 13)	intron (NM_001032378, intron 13 of 13)	-47037.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86522677-2	chr6	86522177	86523177	+	676.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3512.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-33241639-2	chr4	33241139	33242139	+	676.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7148.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45276883-2	chr7	45276383	45277383	+	676.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5990.0	NM_001033176	76713.0	Mm.425445	NM_001033176	ENSMUSG00000070568	Slc6a21	1700039E15Rik|Gm19188	solute carrier family 6 member 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55985622-3	chr13	55985124	55986124	+	676.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	149926.0	NM_012015	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57543558-3	chr16	57543016	57544016	+	676.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-5726.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73005312-3	chr17	73004801	73005801	+	676.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86996.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr11-22672108-3	chr11	22671567	22672567	+	676.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	159784.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144203416-3	chr3	144202915	144203915	+	676.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010723, intron 1 of 4)	intron (NM_010723, intron 1 of 4)	-1019.0	NM_001161769	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111313053-3	chr8	111312564	111313564	+	676.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029005, intron 10 of 10)	intron (NM_029005, intron 10 of 10)	-12842.0	NM_146218	234736.0	Mm.334816	NM_146218	ENSMUSG00000033596	Rfwd3	BC027246	ring finger and WD repeat domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90217072-2	chr9	90216572	90217572	+	676.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 9 of 12)	intron (NM_194334, intron 9 of 12)	53697.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79980949-2	chr3	79980449	79981449	+	676.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95019.0	NM_133187	68659.0	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23972674-2	chr17	23972130	23973130	+	676.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_013921, exon 6 of 6)	exon (NM_013921, exon 6 of 6)	2600.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	0.0	0.0	0.0	2.0	5.0	0.0
Merged-chr19-37418557-2	chr19	37418057	37419057	+	676.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_010615, intron 21 of 21)	intron (NM_010615, intron 21 of 21)	-16284.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-12709250-3	chr2	12708732	12709732	+	676.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-214809.0	NM_008961	19212.0	Mm.229322	NM_008961	ENSMUSG00000026730	Pter	AI790318|Mpr56-1	phosphotriesterase related	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-140688479-3	chr4	140687985	140688985	+	676.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12988.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	3.5	0.0	1.0	0.0	2.5	3.5
Merged-chr15-99722636-2	chr15	99722136	99723136	+	676.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_010271, intron 7 of 7)	intron (NM_010271, intron 7 of 7)	1838.0	NR_155353	102638434.0	Mm.364438	NR_155353		Gm16537	-	predicted gene 16537	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-62691367-3	chr1	62690867	62691867	+	676.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-11950.0	NM_001077406	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-16574317-2	chr16	16573808	16574808	+	676.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	L1_Mus3|LINE|L1	-14089.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63206513-3	chr4	63206011	63207011	+	676.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-8901.0	NM_025685	373864.0	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	8.0	26.0	26.5	25.5	42.0	20.0
Merged-chr10-80153808-2	chr10	80153308	80154308	+	676.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305799, intron 4 of 7)	intron (NM_001305799, intron 4 of 7)	4126.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68901006-2	chr11	68900506	68901506	+	676.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003373)	promoter-TSS (NR_003373)	-560.0	NM_009080	19941.0	Mm.3229	NM_009080	ENSMUSG00000060938	Rpl26	SIG-20	ribosomal protein L26	protein-coding	7.5	7.5	3.5	15.0	23.0	11.5
Merged-chr4-130782129-2	chr4	130781629	130782629	+	676.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001159604)	TTS (NM_001159604)	-10408.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66009203-2	chr5	66008703	66009703	+	676.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4918.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170144037-4	chr2	170143523	170144523	+	676.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1348.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.5	13.0	1.0	0.0	5.0	5.5
Merged-chr5-44238401-3	chr5	44237904	44238904	+	676.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11798.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	6.5	0.0	2.5	0.0	0.0	1.5
Merged-chr7-28972863-4	chr7	28972345	28973345	+	676.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028659, intron 6 of 7)	intron (NM_028659, intron 6 of 7)	9043.0	NM_001285943	73830.0	Mm.29714	NM_028659	ENSMUSG00000053565	Eif3k	1200009C21Rik|Eif3s12	eukaryotic translation initiation factor 3, subunit K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115989852-1	chr11	115989352	115990352	+	676.0	f1_balb.idr	intron (NM_001005608, intron 17 of 39)	intron (NM_001005608, intron 17 of 39)	3863.0	NR_152190	100038636.0	Mm.450138	NR_152190		B230344G16Rik	-	RIKEN cDNA B230344G16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-67532837-3	chr6	67532344	67533344	+	676.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2978.0	NM_020047	56753.0	Mm.439913	NM_020047	ENSMUSG00000051397	Tacstd2	C80403|EGP-1|GA733-1|Ly97|TROP2	tumor-associated calcium signal transducer 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35266874-1	chr12	35266374	35267374	+	676.0	f0_balb.idr	Intergenic	Intergenic	-71977.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	13.5	1.5	6.0	36.5	35.5	34.5
Merged-chr17-78935453-2	chr17	78934964	78935964	+	676.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001024806, exon 2 of 16)	exon (NM_001024806, exon 2 of 16)	1606.0	NM_001024806	12607.0	Mm.24169	NM_009882	ENSMUSG00000024081	Cebpz	AI848081|CBF2|Cbf|Cebpa-rs1	CCAAT/enhancer binding protein zeta	protein-coding	4.0	14.0	4.5	3.0	3.0	0.0
Merged-chr7-29167430-2	chr7	29166930	29167930	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_182927, intron 2 of 5)	intron (NM_182927, intron 2 of 5)	1217.0	NM_182927	101809.0	Mm.377262	NM_182927	ENSMUSG00000037239	Spred3	AW047143|D130060H24Rik|Spred-3	sprouty-related, EVH1 domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94678394-2	chr8	94677894	94678894	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026385, intron 2 of 3)	intron (NM_026385, intron 2 of 3)	11303.0	NM_024269	107566.0	Mm.393247	NM_024191	ENSMUSG00000031776	Arl2bp	1700010P10Rik|1700027H16Rik|6330544B05Rik|AI482273|AI849834|BART|Bart1	ADP-ribosylation factor-like 2 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91045612-2	chr1	91045112	91046112	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-7832.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36718012-2	chr18	36717512	36718512	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	8803.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116594972-2	chr11	116594472	116595472	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033223, intron 1 of 4)	A-rich|Low_complexity|Low_complexity	1285.0	NM_009591	11298.0	Mm.42233	NM_009591	ENSMUSG00000020804	Aanat	AA-NAT|Nat-2|Nat4|Snat	arylalkylamine N-acetyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-145230821-2	chr5	145230315	145231315	+	676.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083958)	promoter-TSS (NM_001083958)	-900.0	NM_001083958	72611.0	Mm.206555	NM_028298	ENSMUSG00000007812	Zfp655	2700038I16Rik|9030409O18Rik|mKIAA4222	zinc finger protein 655	protein-coding	80.5	140.0	159.5	136.0	143.0	159.0
Merged-chr11-116132549-2	chr11	116132049	116133049	+	676.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_024177, exon 8 of 9)	exon (NM_024177, exon 8 of 9)	-1421.0	NM_178802	338364.0	Mm.439976	NM_178802	ENSMUSG00000054517	Trim65	4732463G12Rik	tripartite motif-containing 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133229905-1	chr4	133229405	133230405	+	676.0	f1_balb.idr	Intergenic	Intergenic	9096.0	NM_027152	69655.0	Mm.285685	NM_027152	ENSMUSG00000028865	Cd164l2	2310047N01Rik	CD164 sialomucin-like 2	protein-coding	1.5	1.5	1.0	0.0	1.5	3.0
Merged-chr11-100655741-2	chr11	100655241	100656241	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-5048.0	NM_177790	278304.0	Mm.274734	NM_177790	ENSMUSG00000014198	Zfp385c	A930006D11Rik|Znf385c	zinc finger protein 385C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8519136-1	chr12	8518636	8519636	+	676.0	f0_balb.idr	Intergenic	Intergenic	-19127.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	48.5	52.0	72.5	41.0	50.0	62.0
Merged-chr16-17354642-2	chr16	17354142	17355142	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001983, intron 15 of 54)	intron (NM_001001983, intron 15 of 54)	23271.0	NM_001331047	15160.0	Mm.6609	NM_008223	ENSMUSG00000022766	Serpind1	AA985900|AI303446|HC-II|HCII|Hcf2	serine (or cysteine) peptidase inhibitor, clade D, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85079881-1	chr1	85079381	85080381	+	676.0	f1_balb.idr	Intergenic	Intergenic	29972.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-92841209-1	chr10	92840709	92841709	+	676.0	f0_balb.idr	intron (NM_001347060, intron 61 of 67)	intron (NM_001347060, intron 61 of 67)	-118791.0	NM_008682	17997.0	Mm.2998	NM_008682	ENSMUSG00000019988	Nedd1	-	neural precursor cell expressed, developmentally down-regulated gene 1	protein-coding	0.0	0.0	0.0	2.5	2.0	3.0
Merged-chr17-24698399-1	chr17	24697899	24698899	+	676.0	f1_c57bl6.idr	exon (NM_001357836, exon 2 of 9)	exon (NM_001357836, exon 2 of 9)	2165.0	NM_001357836	71893.0	Mm.390971	NM_027988	ENSMUSG00000019320	Noxo1	2310034C04Rik|P41NOX|P41NOXA|P41NOXB|P41NOXC|Snx28|hslt	NADPH oxidase organizer 1	protein-coding	4.0	3.0	7.0	0.5	1.0	0.0
Merged-chr17-56260189-2	chr17	56259689	56260689	+	676.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010192, exon 1 of 1)	3' UTR (NM_010192, exon 1 of 1)	3396.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73118274-2	chr15	73117774	73118774	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 13 of 18)	intron (NM_153178, intron 13 of 18)	27862.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63794293-1	chr9	63793793	63794793	+	676.0	f0_balb.idr	Intergenic	Intergenic	-36299.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44453976-3	chr10	44453467	44454467	+	676.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007548, intron 2 of 6)	intron (NM_007548, intron 2 of 6)	4781.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9747742-2	chr3	9747242	9748242	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 2 of 7)	Lx|LINE|L1	85937.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-11773051-1	chr18	11772551	11773551	+	676.0	f1_balb.idr	Intergenic	Intergenic	-66223.0	NM_001146287	63955.0	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	16.0	27.0	16.5	7.0	15.0	13.0
Merged-chr4-141803475-2	chr4	141802975	141803975	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277932, intron 2 of 7)	intron (NM_001277932, intron 2 of 7)	9863.0	NM_001277932	12371.0	Mm.88829	NM_015733	ENSMUSG00000028914	Casp9	AI115399|APAF-3|AW493809|CASP-9|Caspase-9|ICE-LAP6|Mch6	caspase 9	protein-coding	0.0	4.0	0.0	0.0	0.0	0.0
Merged-chr3-32509581-2	chr3	32509081	32510081	+	676.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161818)	promoter-TSS (NM_001161818)	-969.0	NM_001161818	67778.0	Mm.285620	NM_144519	ENSMUSG00000027667	Zfp639	6230400O18Rik|ANC-2H01|ZASC1|Znf639	zinc finger protein 639	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-28073805-1	chr5	28073305	28074305	+	676.0	f1_balb.idr	intron (NM_153526, intron 2 of 4)	intron (NM_153526, intron 2 of 4)	2393.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	1.0	2.0	0.0	3.0	3.5	0.0
Merged-chr2-19656992-2	chr2	19656492	19657492	+	676.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033642, exon 1 of 1)	non-coding (NR_033642, exon 1 of 1)	905.0	NR_033642	100041244.0	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86260175-2	chr1	86259675	86260675	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030184, intron 22 of 24)	MTE2a|LTR|ERVL-MaLR	-43046.0	NM_145222	227327.0	Mm.86467	NM_145222	ENSMUSG00000079445	B3gnt7	C330001H22Rik|beta-3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121707319-2	chr9	121706819	121707819	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2290.0	NM_001164562	215474.0	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142969012-2	chr7	142968512	142969512	+	676.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008554, exon 1 of 3)	5' UTR (NM_008554, exon 1 of 3)	252.0	NM_008554	17173.0	Mm.196417	NM_008554	ENSMUSG00000009248	Ascl2	2410083I15Rik|Mash2|bHLHa45	achaete-scute family bHLH transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16376656-2	chr7	16376156	16377156	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019748, intron 2 of 8)	intron (NM_019748, intron 2 of 8)	11240.0	NM_001285892	56459.0	Mm.258530	NM_019748	ENSMUSG00000052833	Sae1	2400010M20Rik|2610044L12Rik|AL033372|AOS1|AW743391|D7Ertd177e|HSPC140|Sua1|Uble1a	SUMO1 activating enzyme subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29369691-2	chr19	29369191	29370191	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 1 of 6)	intron (NM_021893, intron 1 of 6)	2253.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88608977-2	chr3	88608461	88609461	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7246.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	12.0	42.0	19.0	13.5	35.5	25.0
Merged-chr10-89744271-4	chr10	89743761	89744761	+	676.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029166)	promoter-TSS (NM_029166)	-730.0	NM_029166	75089.0	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118933983-1	chr2	118933483	118934483	+	676.0	f1_balb.idr	Intergenic	Intergenic	7486.0	NM_028117	72136.0	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	0.0	2.5	3.5	2.0	2.0	2.0
Merged-chr2-142905397-2	chr2	142904897	142905897	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	2432.0	NR_131921	75053.0	Mm.72638	NR_131921	ENSMUSG00000086504	Kif16bos	4930511F01Rik	kinesin family member 16B, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90631463-2	chr2	90630963	90631963	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-45752.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23706991-1	chr13	23706491	23707491	+	676.0	f1_c57bl6.idr	exon (NM_010424, exon 3 of 6)	exon (NM_010424, exon 3 of 6)	3863.0	NM_001347493	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	21.0	55.5	21.0	14.5	32.0	19.0
Merged-chr5-23618527-1	chr5	23618027	23619027	+	676.0	f1_balb.idr	intron (NM_001359174, intron 2 of 16)	intron (NM_001359174, intron 2 of 16)	-1956.0	NM_009274	20817.0	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	1.5	4.0	4.5	2.0	0.0	2.0
Merged-chr4-135085598-2	chr4	135085098	135086098	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35047.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-26818341-2	chr10	26817841	26818841	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	L1_Mus3|LINE|L1	45829.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45045306-2	chr19	45044806	45045806	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195265, intron 1 of 15)	intron (NM_001195265, intron 1 of 15)	466.0	NM_001195265	100503041.0	Mm.329877	NM_177605	ENSMUSG00000074818	Pdzd7	9130207N01|EG435601|Pdzk7	PDZ domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59467307-1	chr4	59466807	59467807	+	676.0	f0_balb.idr	Intergenic	Intergenic	-28674.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45580660-2	chr17	45580160	45581160	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	YREP_Mm|Unknown|Unknown	-7399.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3657588-3	chr2	3657077	3658077	+	676.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-55881.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-46158616-1	chr14	46158116	46159116	+	676.0	f1_c57bl6.idr	Intergenic	Intergenic	74589.0	NR_002875	218963.0	Mm.282093	NR_002875		Gm1821	-	ubiquitin pseudogene	pseudo	2.0	1.0	0.0	0.0	7.0	1.5
Merged-chr12-12318260-3	chr12	12317776	12318776	+	676.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 2 of 11)	intron (NM_001146119, intron 2 of 11)	56137.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-38030852-1	chr7	38030352	38031352	+	676.0	f1_balb.idr	Intergenic	RMER20A|LTR|ERVK	-11300.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	5.0	0.0	1.0	0.0	10.5	4.5
Merged-chr1-85101880-1	chr1	85101380	85102380	+	676.0	f1_balb.idr	intron (NM_213615, intron 1 of 6)	intron (NM_213615, intron 1 of 6)	7973.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-17795335-1	chr13	17794835	17795835	+	676.0	f0_balb.idr	intron (NM_027118, intron 1 of 13)	intron (NM_027118, intron 1 of 13)	9762.0	NM_001081058	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	0.0	2.5	0.0	0.0	0.0	0.0
Merged-chr19-34507359-2	chr19	34506859	34507859	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 5 of 9)	intron (NM_001111100, intron 5 of 9)	20115.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-16433669-2	chr5	16433169	16434169	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-119826.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127639021-2	chr10	127638521	127639521	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3965.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	2.5	1.0	0.0	2.5	0.0	0.0
Merged-chr18-83011051-2	chr18	83010551	83011551	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90491.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41300092-2	chr10	41299592	41300592	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133999, intron 1 of 22)	RLTR25B|LTR|ERVK	3149.0	NM_133999	103199.0	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-18106912-2	chr18	18106412	18107412	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-525922.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83131446-1	chr8	83130946	83131946	+	676.0	f0_balb.idr	Intergenic	Intergenic	-33906.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83031775-2	chr6	83031275	83032275	+	676.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001291799, exon 5 of 5)	exon (NM_001291799, exon 5 of 5)	1696.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	1.5	8.0	0.5	5.0	2.0	2.5
Merged-chr12-110460219-2	chr12	110459719	110460719	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001135001, intron 2 of 13)	intron (NM_001135001, intron 2 of 13)	13040.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82868314-2	chr18	82867814	82868814	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12417.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5805761-2	chr2	5805261	5806261	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133837, intron 8 of 12)	intron (NM_133837, intron 8 of 12)	-39273.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	0.0	1.0	1.0	0.0	0.0	0.0
Merged-chr6-29649950-3	chr6	29649431	29650431	+	676.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40082.0	NM_001347079	320938.0	Mm.276381	NM_177296	ENSMUSG00000012535	Tnpo3	5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133	transportin 3	protein-coding	3.5	2.0	1.0	5.0	0.0	0.0
Merged-chr19-34540387-2	chr19	34539887	34540887	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-10307.0	NM_008332	15958.0	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-21687970-2	chr15	21687470	21688470	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	576518.0	NM_001008420	215654.0	Mm.300909	NM_001008420	ENSMUSG00000040452	Cdh12	Cdhb	cadherin 12	protein-coding	0.0	1.5	0.0	0.0	3.5	1.0
Merged-chr6-90656852-2	chr6	90656352	90657352	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	37606.0	NM_001037493	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53072050-2	chr4	53071550	53072550	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 24 of 49)	intron (NM_013454, intron 24 of 49)	60170.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93709118-2	chr16	93708618	93709618	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2789.0	NM_026700	70028.0	Mm.23230	NM_026700	ENSMUSG00000022946	Dopey2	0610038M01Rik|2610510B01Rik|AI503246|C21orf5|mKIAA0933	dopey family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27728702-2	chr2	27728202	27729202	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	18119.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29224822-2	chr7	29224322	29225322	+	676.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033525, exon 3 of 3)	3' UTR (NM_001033525, exon 3 of 3)	7700.0	NM_001033525	52150.0	Mm.24877	NM_001033525	ENSMUSG00000046410	Kcnk6	D7Ertd764e|Toss|Twik2	potassium inwardly-rectifying channel, subfamily K, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137660599-1	chr4	137660099	137661099	+	676.0	f1_balb.idr	Intergenic	Intergenic	-4127.0	NM_029563	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	2.0	0.0	5.0	0.0	20.0	1.0
Merged-chr8-24423316-2	chr8	24422816	24423816	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15630.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10792913-2	chr16	10792413	10793413	+	676.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008933)	promoter-TSS (NM_008933)	-808.0	NM_008933	19119.0	Mm.325769	NM_008933	ENSMUSG00000038015	Prm2	AI528784|Prm-2	protamine 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-18916570-2	chr8	18916070	18917070	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TAA)n|Simple_repeat|Simple_repeat	34301.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61238448-2	chr9	61237948	61238948	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55361.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-17358294-1	chr19	17357794	17358794	+	676.0	f1_balb.idr	intron (NM_010265, intron 1 of 2)	ID4|SINE|ID	-1627.0	NM_173442	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	13.5	13.0	11.5	34.5	78.0	42.5
Merged-chr11-20209285-2	chr11	20208785	20209785	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 1 of 5)	B2_Mm2|SINE|B2	7873.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	4.5	12.5	6.5	4.5	3.0	6.5
Merged-chr11-53301428-2	chr11	53300928	53301928	+	676.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008300)	promoter-TSS (NM_008300)	-949.0	NM_008300	15525.0	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111022713-2	chr10	111022213	111023213	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12647.0	NM_172554	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-164309349-2	chr1	164308849	164309849	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178071, intron 2 of 9)	intron (NM_178071, intron 2 of 9)	1677.0	NM_138314	171567.0	Mm.219428	NM_138314	ENSMUSG00000026575	Nme7	D530024H21Rik|Nm23-M7|Nm23-r7	NME/NM23 family member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165648116-2	chr1	165647616	165648616	+	675.875	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178593)	TTS (NM_178593)	-13575.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84172018-2	chr12	84171498	84172498	+	675.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 2 of 12)	intron (NM_001163501, intron 2 of 12)	22017.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18591789-2	chr16	18591289	18592289	+	675.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1118.0	NM_001285472	21380.0	Mm.295194	NM_011532	ENSMUSG00000009097	Tbx1	-	T-box 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117495960-2	chr8	117495460	117496460	+	675.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2315.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-8869881-2	chr13	8869381	8870381	+	675.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039388, intron 1 of 13)	intron (NM_001039388, intron 1 of 13)	1163.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-92135047-2	chr3	92134513	92135513	+	675.833313	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027042)	TTS (NM_027042)	7741.0	NM_027042	69332.0	Mm.120271	NM_027042	ENSMUSG00000027927	Lelp1	1700012F11Rik	late cornified envelope-like proline-rich 1	protein-coding	0.5	4.0	2.5	0.0	0.0	4.0
Merged-chr4-148607965-3	chr4	148607458	148608458	+	675.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr	exon (NM_001003893, exon 7 of 11)	exon (NM_001003893, exon 7 of 11)	5414.0	NM_001003893	17175.0	Mm.378962	NM_010767	ENSMUSG00000028979	Masp2	MASP-2|MAp19	mannan-binding lectin serine peptidase 2	protein-coding	3.0	0.0	2.5	0.0	13.5	7.5
Merged-chr1-74131041-2	chr1	74130541	74131541	+	675.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034060, intron 6 of 11)	intron (NM_001034060, intron 6 of 11)	5500.0	NM_001034060	435626.0	Mm.240447	NM_001034060	ENSMUSG00000061815	Rufy4	F930048N03Rik	RUN and FYVE domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113607594-3	chr13	113607089	113608089	+	675.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	10975.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-36867775-4	chr8	36867242	36868242	+	675.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 2 of 17)	intron (NM_001194940, intron 2 of 17)	84700.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	28.5	23.0	34.5	9.5	32.0	14.5
Merged-chr2-90570476-2	chr2	90569976	90570976	+	675.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	10171.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80994801-2	chr7	80994301	80995301	+	675.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_178707, intron 1 of 9)	intron (NM_178707, intron 1 of 9)	1117.0	NM_178707	233410.0	Mm.29525	NM_178707	ENSMUSG00000005621	Zfp592	A730014M16Rik|Znf592	zinc finger protein 592	protein-coding	4.0	13.5	8.5	4.0	14.0	9.5
Merged-chr4-99484404-4	chr4	99483901	99484901	+	675.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-171898.0	NM_010425	15221.0	Mm.4758	NM_010425	ENSMUSG00000067261	Foxd3	CWH3|Genesis|Hfh2	forkhead box D3	protein-coding	1.0	0.0	2.0	0.0	0.0	1.0
Merged-chr10-34187937-3	chr10	34187444	34188444	+	675.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	19607.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31565923-3	chr15	31565411	31566411	+	675.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2922.0	NM_181588	69574.0	Mm.28108	NM_181588	ENSMUSG00000022235	Cmbl	2310016A09Rik	carboxymethylenebutenolidase-like (Pseudomonas)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57216612-3	chr16	57216118	57217118	+	675.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 2 of 17)	intron (NM_026254, intron 2 of 17)	14848.0	NM_026254	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72092882-3	chr6	72092405	72093405	+	675.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4703.0	NM_001035228	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19522387-3	chr3	19521883	19522883	+	675.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025489, intron 1 of 4)	intron (NM_025489, intron 1 of 4)	-8864.0	NM_001163537	66326.0	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72491398-3	chr5	72490897	72491897	+	675.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122756, intron 1 of 21)	intron (NM_001122756, intron 1 of 21)	12811.0	NM_016869	53419.0	Mm.332425	NM_016869	ENSMUSG00000005220	Corin	AV273130|Lrp4	corin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32226033-2	chr19	32225533	32226533	+	675.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 4 of 9)	ORR1B2|LTR|ERVL-MaLR	-15020.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95649033-2	chr11	95648533	95649533	+	675.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17924.0	NM_008831	18673.0	Mm.263862	NM_008831	ENSMUSG00000038845	Phb	Bap32	prohibitin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-85601987-2	chr3	85601483	85602483	+	675.666626	f0_balb.idr|f0_c57.idr	intron (NM_144896, intron 3 of 12)	intron (NM_144896, intron 3 of 12)	27854.0	NM_144896	229487.0	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-69441185-4	chr9	69440719	69441719	+	675.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12464.0	NM_007585	12306.0	Mm.238343	NM_007585	ENSMUSG00000032231	Anxa2	AW215814|Cal1h	annexin A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118660150-4	chr2	118659652	118660652	+	675.604126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3425.0	NM_001033254	214230.0	Mm.241857	NM_001033254	ENSMUSG00000074923	Pak6	4732456M09	p21 (RAC1) activated kinase 6	protein-coding	2.5	2.0	1.5	6.0	5.5	1.5
Merged-chr7-128344630-5	chr7	128344097	128345097	+	675.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46466.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39735020-2	chr18	39734520	39735520	+	675.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38477.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157514288-3	chr2	157513768	157514768	+	675.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45810.0	NM_001291129	18111.0	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	1.0	0.0	4.0	0.0	0.0	0.5
Merged-chr12-40217792-3	chr12	40217293	40218293	+	675.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013562, intron 1 of 11)	intron (NM_013562, intron 1 of 11)	5018.0	NR_035459	100316693.0		NR_035459	ENSMUSG00000089371	Mir1938	mir-1938|mmu-mir-1938	microRNA 1938	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-90793908-3	chr8	90793417	90794417	+	675.511108	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34918.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0.5	8.5	5.5	0.0	4.0	0.0
Merged-chr6-89361185-2	chr6	89360685	89361685	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008881, intron 1 of 31)	intron (NM_008881, intron 1 of 31)	1428.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83658864-2	chr6	83658362	83659362	+	675.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2746.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	15.5	29.0	39.5	56.5	126.0	153.0
Merged-chr7-80045580-2	chr7	80045079	80046079	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	19351.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	50.5	75.0	46.5	35.0	55.5	46.5
Merged-chr1-23383912-2	chr1	23383412	23384412	+	675.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081079)	promoter-TSS (NM_001081079)	-737.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72883898-2	chr5	72883398	72884398	+	675.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15450.0	NM_001113460	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74028458-2	chr15	74027958	74028958	+	675.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-188787.0	NM_001033365	268816.0	Mm.440635	NM_001033365	ENSMUSG00000072487	Mroh5	Gm628	maestro heat-like repeat family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-3009973-1	chr18	3009473	3010473	+	675.5	f0_balb.idr	Intergenic	Intergenic	113439.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88094836-2	chr3	88094336	88095336	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033484, intron 12 of 37)	intron (NM_001033484, intron 12 of 37)	12785.0	NM_001033484	404710.0	Mm.331133	NM_001033484	ENSMUSG00000028068	Iqgap3	AI593484|D030034H08	IQ motif containing GTPase activating protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124043514-2	chr2	124043014	124044014	+	675.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4c|LINE|L1	-46455.0	NM_001290997	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5927925-2	chr17	5927425	5928425	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025664, intron 16 of 17)	intron (NM_025664, intron 16 of 17)	-13355.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34080592-1	chr19	34080092	34081092	+	675.5	f0_balb.idr	intron (NM_027340, intron 7 of 9)	intron (NM_027340, intron 7 of 9)	13234.0	NM_027340	70166.0	Mm.75602	NM_027340	ENSMUSG00000024770	Lipn	2210418G03Rik|Lipl4	lipase, family member N	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154557183-2	chr2	154556683	154557683	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021546, intron 1 of 12)	intron (NM_021546, intron 1 of 12)	1670.0	NM_021546	56846.0	Mm.143748	NM_021546	ENSMUSG00000027489	Necab3	2900010M17Rik|AI853434|Apba2bp|Nip1|XB51	N-terminal EF-hand calcium binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123372892-2	chr8	123372392	123373392	+	675.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037877)	promoter-TSS (NM_001037877)	-819.0	NM_001359076	66855.0	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65841016-2	chr17	65840516	65841516	+	675.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_104465, exon 19 of 19)	non-coding (NR_104465, exon 19 of 19)	43907.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84553751-2	chr8	84553254	84554254	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252060, intron 17 of 47)	intron (NM_001252060, intron 17 of 47)	109098.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-69348898-2	chr17	69348398	69349398	+	675.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-34277.0	NM_001356283	22666.0	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34873967-2	chr6	34873467	34874467	+	675.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347101, exon 4 of 4)	3' UTR (NM_001347101, exon 4 of 4)	4098.0	NM_199145	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-121076988-2	chr7	121076488	121077488	+	675.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_021554)	TTS (NM_021554)	-2458.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126823020-2	chr7	126822520	126823520	+	675.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029978)	promoter-TSS (NM_029978)	-283.0	NM_029978	68952.0	Mm.440393	NM_026884	ENSMUSG00000058966	Fam57b	1500016O10Rik|A330104J06Rik|AI413816|AW060769	family with sequence similarity 57, member B	protein-coding	0.5	4.5	1.5	3.0	8.0	1.5
Merged-chr11-70679581-2	chr11	70679081	70680081	+	675.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_178116, exon 10 of 23)	exon (NM_178116, exon 10 of 23)	8524.0	NM_001190376	216874.0	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59706194-2	chr15	59705694	59706694	+	675.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57540.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124602208-2	chr2	124601708	124602708	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-8088.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50206460-4	chr11	50206009	50207009	+	675.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290769, intron 4 of 7)	intron (NM_001290769, intron 4 of 7)	4311.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148806171-2	chr4	148805671	148806671	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027195, intron 1 of 15)	CpG	1779.0	NM_027195	69743.0	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr3-101713187-2	chr3	101712687	101713687	+	675.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108480.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90444796-2	chr2	90444296	90445296	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 20 of 23)	intron (NM_008982, intron 20 of 23)	34378.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94371762-2	chr11	94371279	94372279	+	675.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029600, exon 8 of 31)	exon (NM_029600, exon 8 of 31)	21197.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	16.5	35.0	30.5	5.0	28.5	28.5
Merged-chr7-133976258-2	chr7	133975758	133976758	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007400, intron 6 of 22)	intron (NM_007400, intron 6 of 22)	-193473.0	NM_001286031	101437.0	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32|muDDX32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120549508-2	chr1	120549008	120550008	+	675.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41B|LTR|ERVL	-44484.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0.0	6.0	0.0	4.0	0.0	0.0
Merged-chr16-35906190-2	chr16	35905690	35906690	+	675.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-32280.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	0.0	14.5	14.0	14.5	17.0	8.5
Merged-chr4-43001834-2	chr4	43001334	43002334	+	675.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163233)	TTS (NM_001163233)	-1327.0	NM_009503	269523.0	Mm.245976	NM_009503	ENSMUSG00000028452	Vcp	3110001E05|CDC48|p97|p97/VCP	valosin containing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101983748-1	chr15	101983248	101984248	+	675.5	f0_balb.idr	Intergenic	Intergenic	20594.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83124359-2	chr6	83123859	83124859	+	675.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_023547, exon 3 of 5)	exon (NM_023547, exon 3 of 5)	670.0	NM_023547	70020.0	Mm.27814	NM_023547	ENSMUSG00000030034	Ino80b	2510009I23Rik|HMG1YL4|Hmga1l4|Papa1|Znhit4	INO80 complex subunit B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107680114-2	chr3	107679614	107680614	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145542, intron 1 of 16)	intron (NM_145542, intron 1 of 16)	15942.0	NM_001357113	229709.0	Mm.220328	NM_145542	ENSMUSG00000027893	Ahcyl1	1110034F20Rik|AA409031|AA414901|Ahcy-rs3|DCAL|Irbit	S-adenosylhomocysteine hydrolase-like 1	protein-coding	2.0	1.0	14.5	8.5	11.5	10.0
Merged-chr7-31035749-2	chr7	31035249	31036249	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001287217, intron 6 of 8)	L2a|LINE|L2	4568.0	NR_106017	102465635.0		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	4.5	7.0	2.0	0.0	3.0	1.0
Merged-chr16-44964961-2	chr16	44964461	44965461	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027578, intron 4 of 4)	intron (NM_027578, intron 4 of 4)	21283.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118487896-2	chr7	118487396	118488396	+	675.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033380, exon 1 of 1)	3' UTR (NM_001033380, exon 1 of 1)	4079.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	14.5	36.5	33.0	11.0	13.0	34.5
Merged-chr17-84068329-2	chr17	84067829	84068829	+	675.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10331.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-46979715-2	chr13	46979215	46980215	+	675.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	35135.0	NM_175340	105193.0	Mm.25593	NM_175340	ENSMUSG00000044231	Nhlrc1	AI505271|B230309E09Rik|EPM2B	NHL repeat containing 1	protein-coding	0.0	0.0	3.0	0.0	0.0	0.0
Merged-chr11-98900744-2	chr11	98900244	98901244	+	675.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_197940, exon 8 of 8)	3' UTR (NM_197940, exon 8 of 8)	-7145.0	NM_001025779	23834.0	Mm.20912	NM_011799	ENSMUSG00000017499	Cdc6	CDC18L	cell division cycle 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-50942982-2	chr2	50942482	50943482	+	675.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33298.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91688435-2	chr6	91687935	91688935	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 1 of 14)	B1F|SINE|Alu	4368.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36155311-2	chr17	36154811	36155811	+	675.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033517, exon 2 of 4)	non-coding (NR_033517, exon 2 of 4)	10293.0	NR_033517	675325.0	Mm.75890	NR_033517	ENSMUSG00000038311	2410017I17Rik	-	RIKEN cDNA 2410017I17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111468055-2	chr13	111467555	111468555	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028487, intron 2 of 12)	L1M3|LINE|L1	22072.0	NM_028487	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112643118-2	chr13	112642618	112643618	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145885, intron 3 of 21)	intron (NM_001145885, intron 3 of 21)	9192.0	NM_010029	13206.0	Mm.12818	NM_010029	ENSMUSG00000021758	Ddx4	AV206478|Mvh|VASA	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4	protein-coding	5.0	0.0	4.0	8.0	0.0	2.0
Merged-chr13-52069318-2	chr13	52068818	52069818	+	675.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27423.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142096102-2	chr7	142095602	142096602	+	675.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008748)	promoter-TSS (NM_008748)	-818.0	NM_008748	18218.0	Mm.39725	NM_008748	ENSMUSG00000037887	Dusp8	5530400B01Rik|AI593498|Nttp1	dual specificity phosphatase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146464970-2	chr3	146464443	146465443	+	675.5	f0_balb.idr|f1_balb.idr	3' UTR (NM_001293672, exon 7 of 7)	3' UTR (NM_001293672, exon 7 of 7)	14476.0	NM_001293672	74245.0	Mm.45396	NM_028836	ENSMUSG00000028189	Ctbs	2210401K11Rik|CTB	chitobiase, di-N-acetyl-	protein-coding	0.5	1.5	5.0	0.0	8.0	4.5
Merged-chr15-25988089-2	chr15	25987589	25988589	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144523, intron 3 of 5)	intron (NM_144523, intron 3 of 5)	3723.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49189870-2	chr16	49189370	49190370	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166210, intron 38 of 40)	intron (NM_001166210, intron 38 of 40)	132384.0	NM_001166210	667772.0	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79571604-2	chr3	79571104	79572104	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152118, intron 1 of 1)	Lx3A|LINE|L1	3412.0	NR_152118	75879.0	Mm.410800	NR_152118		4930589L23Rik	-	RIKEN cDNA 4930589L23 gene	ncRNA	2.0	6.5	15.0	2.0	6.5	15.0
Merged-chr14-30621621-2	chr14	30621121	30622121	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	4587.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	2.5	2.0	4.5	1.5	2.0	4.0
Merged-chr7-31036238-2	chr7	31035738	31036738	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001287217, intron 6 of 8)	MLT1H|LTR|ERVL-MaLR	4079.0	NR_106017	102465635.0		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79931872-2	chr10	79931372	79932372	+	675.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_007880, exon 3 of 9)	exon (NM_007880, exon 3 of 9)	4531.0	NM_001288625	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127681092-2	chr10	127680592	127681592	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173732, intron 1 of 6)	intron (NM_173732, intron 1 of 6)	4027.0	NM_001113211	210035.0	Mm.251075	NM_173732	ENSMUSG00000040195	Nemp1	Tmem194|Tmem194a	nuclear envelope integral membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4345500-1	chr18	4345000	4346000	+	675.5	f0_balb.idr	intron (NM_007746, intron 2 of 7)	intron (NM_007746, intron 2 of 7)	7453.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-72943603-2	chr17	72943105	72944105	+	675.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	25300.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-45049898-2	chr10	45049398	45050398	+	675.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17316.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29384237-2	chr19	29383737	29384737	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 6 of 6)	PB1D10|SINE|Alu	16799.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90466266-2	chr2	90465766	90466766	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 5 of 23)	intron (NM_008982, intron 5 of 23)	12908.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80800292-2	chr10	80799792	80800792	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013651, intron 1 of 8)	intron (NM_013651, intron 1 of 8)	1557.0	NM_013651	20222.0	Mm.358633	NM_013651	ENSMUSG00000020211	Sf3a2	66kDa|AW047242|PRP11|SFA66|Sap62	splicing factor 3a, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29468186-2	chr19	29467686	29468686	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	RMER17C|LTR|ERVK	53801.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-37114323-2	chr14	37113823	37114823	+	675.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4222.0	NM_001206684	70045.0	Mm.271619	NM_001206684	ENSMUSG00000096001	2610528A11Rik	AW494830|Gpr15l	RIKEN cDNA 2610528A11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91363572-3	chr16	91363120	91364120	+	675.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9163.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100204277-2	chr15	100203777	100204777	+	675.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172819, intron 27 of 32)	intron (NM_172819, intron 27 of 32)	-16241.0	NR_037311	100499528.0		NR_037311	ENSMUSG00000092752	Mir3473a	Mir3473|mir-3473a|mmu-mir-3473|mmu-mir-3473a	microRNA 3473a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122970250-3	chr5	122969732	122970732	+	675.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003953, intron 4 of 22)	intron (NM_001003953, intron 4 of 22)	18867.0	NM_001003953	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	4.0	0.0	0.0	0.0	1.0	1.5
Merged-chr1-85245692-1	chr1	85245192	85246192	+	675.333313	f1_balb.idr	TTS (NM_001037909)	TTS (NM_001037909)	24874.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-115089141-2	chr13	115088641	115089641	+	675.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_134058, intron 1 of 1)	intron (NM_134058, intron 1 of 1)	1017.0	NM_134058	105083.0	Mm.486295	NM_134058	ENSMUSG00000042275	Pelo	AA409897|AI852218	pelota mRNA surveillance and ribosome rescue factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-28949299-3	chr4	28948799	28949799	+	675.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010141, intron 11 of 16)	intron (NM_010141, intron 11 of 16)	-118780.0	NR_151693	102634169.0		NR_151693		Gm11917	-	predicted gene 11917	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-72980935-3	chr15	72980511	72981511	+	675.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029640, intron 8 of 21)	intron (NM_029640, intron 8 of 21)	74801.0	NM_029640	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	0.5	0.0	0.5	3.0	0.0	2.0
Merged-chr19-3997808-2	chr19	3997308	3998308	+	675.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_011533, exon 5 of 8)	exon (NM_011533, exon 5 of 8)	-2772.0	NM_025529	66387.0	Mm.259222	NM_025529	ENSMUSG00000110949	Nudt8	2310039H17Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87186430-2	chr1	87185930	87186930	+	675.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_027084, exon 8 of 13)	exon (NM_027084, exon 8 of 13)	3116.0	NM_027084	69453.0	Mm.84618	NM_027084	ENSMUSG00000036480	Prss56	1700027L20Rik	protease, serine 56	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101916059-2	chr5	101915559	101916559	+	675.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 23 of 66)	intron (NM_172882, intron 23 of 66)	150929.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	1.5	0.0	2.0	7.0	0.0	0.0
Merged-chr9-77963480-4	chr9	77962970	77963970	+	675.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134255, intron 3 of 7)	intron (NM_134255, intron 3 of 7)	46105.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	1.5	9.0	3.0	0.5	7.0	3.5
Merged-chr10-18996579-2	chr10	18996065	18997065	+	675.25	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	15398.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47852355-2	chr17	47851898	47852898	+	675.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17707.0	NM_001109973	17240.0	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	0.0	0.0	2.0	0.0	0.0	5.0
Merged-chr16-93819843-2	chr16	93819344	93820344	+	675.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-12277.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	20.5	36.0	29.5	20.5	17.5	38.0
Merged-chr10-61469055-3	chr10	61468552	61469552	+	675.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6781.0	NM_153542	216011.0	Mm.136116	NM_153542	ENSMUSG00000037151	Lrrc20	BC036304	leucine rich repeat containing 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79672085-2	chr10	79671585	79672585	+	675.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_148934, intron 1 of 1)	intron (NM_148934, intron 1 of 1)	2675.0	NM_148934	110012.0	Mm.22623	NM_148934	ENSMUSG00000020308	Tpgs1	AV005629|Gm16517|Gtrgeo22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26123343-3	chr8	26122840	26123840	+	675.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357292, intron 2 of 6)	intron (NM_001357292, intron 2 of 6)	3530.0	NM_001357294	77733.0	Mm.291906	NM_029965	ENSMUSG00000013878	Rnf170	6720407G21Rik|AI481227	ring finger protein 170	protein-coding	13.5	21.5	12.0	21.0	13.5	10.5
Merged-chr13-97959363-3	chr13	97958878	97959878	+	675.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012026, intron 22 of 35)	L1MD1|LINE|L1	208266.0	NR_152263	111365222.0	Mm.440079	NR_152263		Eyelinc18	-	uncharacterized EyeLinc18	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37322996-3	chr1	37322474	37323474	+	675.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030266, intron 1 of 25)	MIRc|SINE|MIR	23136.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180852384-2	chr1	180851884	180852884	+	675.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145943, intron 1 of 6)	B1_Mm|SINE|Alu	1233.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5569603-2	chr19	5569103	5570103	+	675.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033448, exon 2 of 2)	exon (NM_001033448, exon 2 of 2)	1579.0	NM_001033448	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12988165-2	chr17	12987665	12988665	+	675.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175394, intron 1 of 5)	B1F2|SINE|Alu	4094.0	NM_001113533	60532.0	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39782095-4	chr1	39781586	39782586	+	675.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	23246.0	NM_001177348	100042065.0	Mm.209678	NM_001177348	ENSMUSG00000091937	Gm3646	-	predicted gene 3646	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83158632-4	chr8	83158124	83159124	+	675.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-6728.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	50.5	91.0	62.5	34.0	80.5	33.5
Merged-chr7-56019100-2	chr7	56018560	56019560	+	675.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_153578, intron 1 of 4)	intron (NM_153578, intron 1 of 4)	513.0	NM_153578	233280.0	Mm.389901	NM_153578	ENSMUSG00000047037	Nipa1	1110027G09Rik|A830014A18Rik|FSP3|Spg6	non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)	protein-coding	0.0	1.5	6.5	1.0	1.5	7.5
Merged-chr15-76872491-2	chr15	76871951	76872951	+	675.125	f0_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1016.0	NM_001007568	71591.0	Mm.38195	NM_001007568	ENSMUSG00000022526	Zfp251	9130001M19Rik|AV339307	zinc finger protein 251	protein-coding	6.0	6.5	10.5	3.0	13.5	16.5
Merged-chr4-88725562-4	chr4	88725027	88726027	+	675.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3019.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-90841332-1	chr8	90840832	90841832	+	675.0	f0_balb.idr	intron (NM_177224, intron 1 of 39)	intron (NM_177224, intron 1 of 39)	12497.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	38.5	75.5	60.0	16.0	79.0	41.5
Merged-chr1-60857805-2	chr1	60857331	60858331	+	675.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51194.0	NM_009843	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	5.5	2.0	3.0	6.5	1.5	0.0
Merged-chr11-50202460-2	chr11	50201960	50202960	+	675.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011018, exon 7 of 8)	exon (NM_011018, exon 7 of 8)	8360.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152824442-2	chr1	152823942	152824942	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 6 of 15)	intron (NM_010877, intron 6 of 15)	24289.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111187318-2	chr8	111186818	111187818	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 8 of 25)	B1_Mus2|SINE|Alu	-41820.0	NR_040364	434350.0	Mm.442061	NR_040363		9430091E24Rik	-	RIKEN cDNA 9430091E24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-89143940-2	chr18	89143440	89144440	+	675.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53487.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-63066185-2	chr10	63065685	63066685	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026701, intron 2 of 8)	intron (NM_026701, intron 2 of 8)	4596.0	NM_026701	68371.0	Mm.261389	NM_026701	ENSMUSG00000112129	Pbld1	0610038K03Rik|Mawbp|Pbld	phenazine biosynthesis-like protein domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71249111-1	chr17	71248611	71249611	+	675.0	f1_balb.idr	3' UTR (NM_001164885, exon 20 of 20)	3' UTR (NM_001164885, exon 20 of 20)	44457.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	1.0	15.0	0.5	1.5	0.0	8.5
Merged-chr17-34189229-2	chr17	34188729	34189729	+	675.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013683, exon 2 of 11)	exon (NM_013683, exon 2 of 11)	1673.0	NM_013683	21354.0	Mm.482076	NM_013683	ENSMUSG00000037321	Tap1	ABC17|APT1|Abcb2|Ham-1|Ham1|MTP1|PSF1|RING4|TAP|Tap-1|Y3	transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47592810-2	chr17	47592310	47593310	+	675.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007632)	promoter-TSS (NM_007632)	-657.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37515083-1	chr19	37514583	37515583	+	675.0	f0_balb.idr	Intergenic	Intergenic	-35335.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	1.5	10.5	3.0	1.0	1.0	3.0
Merged-chr19-60165452-1	chr19	60164952	60165952	+	675.0	f1_balb.idr	Intergenic	Intergenic	20777.0	NR_026942	107376.0	Mm.245813	NR_026942	ENSMUSG00000053117	E330013P04Rik	9930018I18Rik|AW492152	RIKEN cDNA E330013P04 gene	ncRNA	16.5	36.5	18.5	6.0	6.0	11.5
Merged-chr6-42801152-2	chr6	42800652	42801652	+	675.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11111.0	NM_001011869	258207.0	Mm.377378	NM_001011869	ENSMUSG00000094192	Olfr452	MOR257-5P	olfactory receptor 452	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59551712-2	chr9	59551212	59552212	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	12172.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-119058305-2	chr10	119057805	119058805	+	675.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7806.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37370060-2	chr19	37369560	37370560	+	675.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-6343.0	NM_010615	16551.0	Mm.42203	NM_010615	ENSMUSG00000012443	Kif11	Eg5|Kif8|Kifl1|Knsl1	kinesin family member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62336748-2	chr10	62336248	62337248	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010438, intron 4 of 21)	intron (NM_010438, intron 4 of 21)	3673.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4111719-2	chr19	4111219	4112219	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008851, intron 18 of 22)	intron (NM_008851, intron 18 of 22)	9856.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99336056-1	chr5	99335556	99336556	+	675.0	f0_c57.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-83129.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77689385-1	chr9	77688885	77689885	+	675.0	f0_balb.idr	Intergenic	Intergenic	52653.0	NM_172925	244923.0	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	2.5	11.0	0.5	6.0	10.5	7.5
Merged-chr4-41352678-2	chr4	41352178	41353178	+	675.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355508, exon 1 of 7)	5' UTR (NM_001355508, exon 1 of 7)	715.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	3.0	30.0	10.0	14.0	12.0	10.0
Merged-chr1-75478202-2	chr1	75477702	75478702	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001566, intron 1 of 3)	intron (NM_001001566, intron 1 of 3)	1269.0	NM_001001566	74241.0	Mm.260577	NM_001001565	ENSMUSG00000032997	Chpf	1700028N03Rik|AI414328|D1Bwg1363e	chondroitin polymerizing factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-78378986-2	chr16	78378486	78379486	+	675.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1805.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-110075633-1	chr8	110075133	110076133	+	675.0	f0_balb.idr	Intergenic	Intergenic	-4101.0	NM_175480	234725.0	Mm.87487	NM_175480	ENSMUSG00000044676	Zfp612	B230354B21Rik	zinc finger protein 612	protein-coding	0.0	1.0	0.5	0.0	0.5	1.5
Merged-chr8-26184393-2	chr8	26183893	26184893	+	675.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26224.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122291917-2	chr3	122291417	122292417	+	675.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5a|LINE|L1	1786.0	NR_030439	791077.0		NR_030439	ENSMUSG00000076456	Mir760	Mirn760|mir-760|mmu-mir-760	microRNA 760	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54546159-2	chr12	54545659	54546659	+	675.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99853.0	NR_035439	100316682.0		NR_035439	ENSMUSG00000106344	Mir1892	Mirn1892|mir-1892|mmu-mir-1892	microRNA 1892	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84671737-1	chr8	84671237	84672237	+	675.0	f1_balb.idr	3' UTR (NM_025788, exon 6 of 6)	3' UTR (NM_025788, exon 6 of 6)	-8885.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.0	2.5	0.0	3.5	0.0	1.0
Merged-chr12-40550200-2	chr12	40549700	40550700	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	104147.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33151700-2	chr16	33151200	33152200	+	675.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33371.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140595538-2	chr5	140595038	140596038	+	675.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11803.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11787930-2	chr11	11787470	11788470	+	675.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	20992.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	0.5	2.5	2.0	3.0	4.0	3.0
Merged-chr8-46292862-2	chr8	46292362	46293362	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173789, intron 3 of 3)	intron (NM_173789, intron 3 of 3)	1809.0	NM_173789	234219.0	Mm.145631	NM_173789	ENSMUSG00000047171	Helt	A830086M02|Hesl|Heslike|Mgn|megane	helt bHLH transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-79379973-1	chr4	79379473	79380473	+	675.0	f1_balb.idr	Intergenic	L1_Mus3|LINE|L1	785926.0	NR_131142	623726.0		NR_131142		A430085M09Rik	EG623726	RIKEN cDNA A430085M09 gene	ncRNA	0.0	0.0	5.5	9.0	0.0	0.0
Merged-chr1-164078649-2	chr1	164078149	164079149	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164059, intron 7 of 7)	intron (NM_001164059, intron 7 of 7)	16573.0	NM_011346	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133461064-1	chr4	133460564	133461564	+	675.0	f1_c57bl6.idr	Intergenic	Intergenic	-19069.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	15.5	5.0	0.0	0.0	6.0	6.0
Merged-chr5-124121019-2	chr5	124120519	124121519	+	675.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011256, exon 25 of 25)	3' UTR (NM_011256, exon 25 of 25)	4911.0	NM_144509	65105.0	Mm.29430	NM_144509	ENSMUSG00000029404	Arl6ip4	AA408210|AA408365|Aip-4|Srp25	ADP-ribosylation factor-like 6 interacting protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10768955-3	chr16	10768435	10769435	+	675.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16601.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135294159-3	chr4	135293659	135294659	+	675.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21399.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75008463-2	chr14	75007963	75008963	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 3 of 3)	MTB|LTR|ERVL-MaLR	-7564.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-54809346-2	chr3	54808846	54809846	+	675.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-1555.0	NM_133231	170767.0	Mm.185735	NM_133231	ENSMUSG00000036615	Rfxap	5730495K23Rik	regulatory factor X-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171659811-1	chr1	171659311	171660311	+	675.0	f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-6774.0	NM_144539	75345.0	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	17.0	14.0	4.5	17.5	30.0	12.5
Merged-chr13-75994529-1	chr13	75994029	75995029	+	675.0	f1_c57bl6.idr	intron (NM_029343, intron 4 of 4)	intron (NM_029343, intron 4 of 4)	24033.0	NM_178916	218341.0	Mm.266515	NM_178916	ENSMUSG00000043190	Rfesd	AI256775|D030068K09	Rieske (Fe-S) domain containing	protein-coding	3.5	3.5	11.5	0.0	2.0	4.5
Merged-chr17-31081737-2	chr17	31081237	31082237	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	24043.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	11.0	2.0	11.5	0.5	11.0	6.5
Merged-chr15-100714706-1	chr15	100714206	100715206	+	675.0	f0_balb.idr	intron (NM_001161768, intron 3 of 11)	intron (NM_001161768, intron 3 of 11)	5771.0	NM_001161768	207839.0	Mm.22969	NM_172451	ENSMUSG00000037280	Galnt6	4632410F13|AW047994|GalNAc-T6	polypeptide N-acetylgalactosaminyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr6-48582163-2	chr6	48581661	48582661	+	675.0	f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-7284.0	NM_183309	330305.0	Mm.123868	NM_183309	ENSMUSG00000052730	Gm5111	A630038D02|EG330305	predicted gene 5111	protein-coding	8.5	12.0	12.0	11.0	3.5	6.5
Merged-chr8-10893866-2	chr8	10893366	10894366	+	675.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6056.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-116203130-2	chr10	116202630	116203630	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358484, intron 5 of 12)	L1_Mus3|LINE|L1	25779.0	NM_001161840	19279.0	Mm.336316	NM_011217	ENSMUSG00000020151	Ptprr	Gmcp1|PTP-SL|PTPBR7|RPTPRR|mPTP213	protein tyrosine phosphatase, receptor type, R	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168120924-2	chr2	168120424	168121424	+	675.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33589.0	NR_040327	77017.0	Mm.407822	NR_040327	ENSMUSG00000087648	E130018N17Rik	-	RIKEN cDNA E130018N17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153071323-2	chr2	153070827	153071827	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145536, intron 4 of 8)	intron (NM_145536, intron 4 of 8)	5372.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	19.0	0.0	3.0	6.0	0.0	1.0
Merged-chr1-150375529-1	chr1	150375029	150376029	+	675.0	f0_balb.idr	exon (NM_145511, exon 10 of 14)	exon (NM_145511, exon 10 of 14)	-17309.0	NM_133780	108989.0	Mm.174256	NM_133780	ENSMUSG00000006005	Tpr	2610029M07Rik|C77892	translocated promoter region, nuclear basket protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-88466120-2	chr2	88465620	88466620	+	675.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	4778.0	NM_146529	258522.0	Mm.377550	NM_146529	ENSMUSG00000049372	Olfr1183	MOR230-6	olfactory receptor 1183	protein-coding	0.5	1.0	0.0	1.0	5.0	0.5
Merged-chr4-89488035-1	chr4	89487535	89488535	+	675.0	f0_balb.idr	intron (NR_132431, intron 7 of 9)	intron (NR_132431, intron 7 of 9)	-177003.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	0.5	10.0	0.0	0.5	10.0	0.0
Merged-chr5-108414847-2	chr5	108414347	108415347	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008806, intron 3 of 21)	intron (NM_008806, intron 3 of 21)	19552.0	NR_154996	11958.0	Mm.136093	NM_007507	ENSMUSG00000050856	Atp5k	2610008D24Rik|Atp5i|Lfm1	ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37912366-2	chr13	37911866	37912866	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 6 of 9)	L3|LINE|CR1	23495.0	NM_001177869	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93472759-2	chr2	93472259	93473259	+	675.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-9809.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	5.5	0.0	1.0	6.0	0.0	0.0
Merged-chr18-13790310-2	chr18	13789810	13790810	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360804, intron 5 of 7)	intron (NM_001360804, intron 5 of 7)	182423.0	NM_001360804	225207.0	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-45409631-2	chr18	45409131	45410131	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312905, intron 2 of 10)	Lx3_Mus|LINE|L1	140771.0	NM_001312905	140492.0	Mm.411614	NM_080465	ENSMUSG00000054477	Kcnn2	KCa2.2|SK2|SKCA2|bc|fri	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112344947-2	chr5	112344447	112345447	+	675.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_138646, exon 2 of 14)	5' UTR (NM_138646, exon 2 of 14)	1852.0	NM_138646	192232.0	Mm.238043	NM_138646	ENSMUSG00000042328	Hps4	2010205O06Rik|AU040608|BLOC-3|C130020P05Rik|le|mKIAA1667	HPS4, biogenesis of lysosomal organelles complex 3 subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-31892256-2	chr11	31891755	31892755	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290678, intron 2 of 7)	RMER4B|LTR|ERVK	21315.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	19.5	31.5	8.0	21.0	28.5	17.5
Merged-chr4-94603955-1	chr4	94603455	94604455	+	675.0	f1_c57bl6.idr	promoter-TSS (NM_172695)	promoter-TSS (NM_172695)	-708.0	NM_172695	18786.0	Mm.490101	NM_172695	ENSMUSG00000028577	Plaa	2410007N06|AI536418|AU018445|AW208417|D4Ertd618e|PLA2P|PLAP|Ufd3	phospholipase A2, activating protein	protein-coding	1.5	49.5	35.0	7.0	3.5	14.0
Merged-chr14-31195811-2	chr14	31195311	31196311	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347583, intron 3 of 13)	intron (NM_001347583, intron 3 of 13)	11015.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93805073-2	chr1	93804573	93805573	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025454, intron 1 of 7)	intron (NM_025454, intron 1 of 7)	1108.0	NM_025454	66262.0	Mm.64065	NM_025454	ENSMUSG00000026283	Ing5	1700001C14Rik|1700027H23Rik|1810018M11Rik|AI225768	inhibitor of growth family, member 5	protein-coding	6.0	0.5	0.5	1.5	2.5	4.0
Merged-chr7-134692053-2	chr7	134691553	134692553	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033420, intron 1 of 51)	MLT1C|LTR|ERVL-MaLR	21366.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	0.0	0.5	2.0	0.0	0.0	0.0
Merged-chr6-21101088-2	chr6	21100588	21101588	+	675.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4-int|LTR|ERVL-MaLR	-115021.0	NM_019697	16508.0	Mm.425316	NM_019697	ENSMUSG00000060882	Kcnd2	AI839615|AW555701|Kv4.2|R75121|mKIAA1044	potassium voltage-gated channel, Shal-related family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21849860-1	chr10	21849360	21850360	+	675.0	f1_balb.idr	Intergenic	Intergenic	-32324.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	3.5	8.5	3.5	9.0	18.0	25.0
Merged-chr11-16509594-2	chr11	16509094	16510094	+	675.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-1110.0	NM_001109971	20335.0	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	0.0	0.5	1.0	0.0	1.0	3.0
Merged-chr4-129623041-2	chr4	129622541	129623541	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025455, intron 1 of 5)	intron (NM_025455, intron 1 of 5)	867.0	NM_025455	66264.0	Mm.383215	NM_025455	ENSMUSG00000028795	Ccdc28b	1110002E08Rik|1810010N17Rik	coiled coil domain containing 28B	protein-coding	35.5	54.0	25.5	40.5	42.0	20.5
Merged-chr1-30779771-1	chr1	30779271	30780271	+	675.0	f0_balb.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	83485.0	NM_001081080	213109.0	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik	PHD finger protein 3	protein-coding	10.5	0.0	4.5	8.0	3.0	1.5
Merged-chr8-3643617-2	chr8	3643117	3644117	+	675.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011503, exon 19 of 19)	3' UTR (NM_011503, exon 19 of 19)	-12153.0	NM_001204959	57264.0	Mm.1181	NM_022984	ENSMUSG00000012705	Retn	ADSF|Fizz3|Rstn|Xcp4	resistin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5746179-2	chr19	5745644	5746644	+	674.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008520, intron 4 of 27)	intron (NM_008520, intron 4 of 27)	5240.0	NM_008520	16998.0	Mm.182396	NM_008520	ENSMUSG00000024940	Ltbp3	Ltbp2|mFLJ00070	latent transforming growth factor beta binding protein 3	protein-coding	7.5	9.0	0.0	2.5	3.5	0.0
Merged-chr10-78043555-4	chr10	78043048	78044048	+	674.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271549)	promoter-TSS (NM_001271549)	62.0	NM_001271552	11634.0	Mm.35300	NM_009646	ENSMUSG00000000731	Aire	-	autoimmune regulator (autoimmune polyendocrinopathy candidiasis ectodermal dystrophy)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101851019-3	chr13	101850522	101851522	+	674.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82805.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	4.0	15.0	8.0	7.0	13.5	7.5
Merged-chr15-83607586-3	chr15	83607070	83608070	+	674.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271473, intron 19 of 19)	intron (NM_001271473, intron 19 of 19)	-12413.0	NM_183017	223723.0	Mm.46778	NM_183017	ENSMUSG00000016757	Ttll12	BC055368|D430005B17	tubulin tyrosine ligase-like family, member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152800877-3	chr1	152800308	152801308	+	674.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 1 of 15)	intron (NM_010877, intron 1 of 15)	655.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-189867653-3	chr1	189867153	189868153	+	674.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008976, intron 18 of 18)	intron (NM_008976, intron 18 of 18)	54638.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	0.0	3.5	3.0	5.5	7.0	6.0
Merged-chr4-101296489-2	chr4	101296017	101297017	+	674.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31235.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	7.5	16.0	6.0	9.5	7.0	4.5
Merged-chr11-34781003-2	chr11	34780503	34781503	+	674.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 1 of 51)	MLT1J|LTR|ERVL-MaLR	2902.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	4.5	0.5	5.5	2.5	1.0	0.0
Merged-chr15-81057899-2	chr15	81057388	81058388	+	674.75	f0_balb.idr|f0_c57.idr	intron (NM_001082536, intron 2 of 13)	G-rich|Low_complexity|Low_complexity	47159.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63782860-4	chr9	63782367	63783367	+	674.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24873.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83272373-4	chr11	83271966	83272966	+	674.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	14260.0	NM_001166028	237890.0	Mm.297670	NM_001166028	ENSMUSG00000082101	Slfn14	Gm20|Slfn14-ps	schlafen 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-44990656-3	chr14	44990140	44991140	+	674.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008964, intron 1 of 1)	intron (NM_008964, intron 1 of 1)	2529.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-105313190-2	chr10	105312690	105313690	+	674.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_177368, intron 7 of 11)	Tigger12c|DNA|TcMar-Tigger	261289.0	NM_177368	278279.0	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-14813192-3	chr18	14812717	14813717	+	674.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001100449, exon 7 of 15)	exon (NM_001100449, exon 7 of 15)	29972.0	NM_001100449	72504.0	Mm.312233	NM_001100449	ENSMUSG00000054321	Taf4b	105kDa|2610524B04Rik|4932409F03Rik|AW987595|TAFII-105|TAFII105|Taf2c2	TATA-box binding protein associated factor 4b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97805958-3	chr6	97805456	97806456	+	674.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1102.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111818450-1	chr13	111817950	111818950	+	674.666687	f0_balb.idr	Intergenic	Intergenic	-9457.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	4.5	6.0	0.0	4.0	13.0	0.0
Merged-chr17-47212265-3	chr17	47211744	47212744	+	674.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 3 of 19)	intron (NM_001097623, intron 3 of 19)	-17986.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139284647-2	chr4	139284164	139285164	+	674.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 6 of 9)	intron (NM_001037761, intron 6 of 9)	26044.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	0.0	3.5	3.0	3.0	0.0	9.0
Merged-chr4-150627580-2	chr4	150627080	150628080	+	674.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24594.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44895455-3	chr19	44894963	44895963	+	674.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35656.0	NM_172638	226151.0	Mm.212609	NM_172638	ENSMUSG00000036097	Slf2	3632432H19|Fam178a	SMC5-SMC6 complex localization factor 2	protein-coding	0.0	0.0	1.0	0.0	0.5	2.5
Merged-chr18-65013689-3	chr18	65013193	65014193	+	674.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 2 of 30)	intron (NM_001114386, intron 2 of 30)	-9834.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr12-76254522-2	chr12	76254022	76255022	+	674.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138745)	promoter-TSS (NM_138745)	-710.0	NM_138745	108156.0	Mm.29584	NM_138745	ENSMUSG00000021048	Mthfd1	Dcs|E430024A07Rik|Mthfd	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-141055157-2	chr5	141054657	141055657	+	674.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54561.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-10980558-2	chr14	10980058	10981058	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308285, intron 2 of 9)	intron (NM_001308285, intron 2 of 9)	181477.0	NM_010210	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-143229975-2	chr6	143229475	143230475	+	674.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15913.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47711866-2	chr9	47711366	47712366	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	106342.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	30.5	44.0	38.0	35.0	42.5	26.0
Merged-chr2-52758878-2	chr2	52758378	52759378	+	674.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16729.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50359742-1	chr11	50359242	50360242	+	674.5	f0_balb.idr	Intergenic	CpG	-1863.0	NR_030529	100049547.0		NR_030529	ENSMUSG00000076450	Mir804	Mirn804|mmu-mir-804	microRNA 804	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-62880380-2	chr14	62879892	62880892	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	14850.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	8.0	25.5	25.5	9.0	16.5	9.0
Merged-chr5-20946612-2	chr5	20946112	20947112	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080977, intron 1 of 7)	(A)n|Simple_repeat|Simple_repeat	-4377.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66274994-2	chr14	66274494	66275494	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	6058.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	7.5	0.0	5.5	0.0	1.5	3.5
Merged-chr17-5004554-3	chr17	5004036	5005036	+	674.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 1 of 19)	intron (NM_001085355, intron 1 of 19)	9462.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85740588-2	chr12	85740088	85741088	+	674.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5951.0	NM_145447	217721.0	Mm.301076	NM_145447	ENSMUSG00000034258	Flvcr2	CCT|Mfsd7c	feline leukemia virus subgroup C cellular receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-19618185-2	chr15	19617682	19618682	+	674.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	432809.0	NR_155419	102639102.0	Mm.463245	NR_155419	ENSMUSG00000115803	Gm35496	-	predicted gene, 35496	ncRNA	0.0	7.0	4.0	0.0	0.5	0.0
Merged-chr9-110385529-2	chr9	110385029	110386029	+	674.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001103162)	TTS (NM_001103162)	22681.0	NM_001081043	104831.0	Mm.335477	NM_001081043	ENSMUSG00000036057	Ptpn23	AI462446|PTP-TD14	protein tyrosine phosphatase, non-receptor type 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90442317-2	chr2	90441817	90442817	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 21 of 23)	intron (NM_008982, intron 21 of 23)	36857.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-41168344-2	chr9	41167844	41168844	+	674.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10282.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	7.0	4.5	3.5	18.0	10.0	9.0
Merged-chr18-12133361-2	chr18	12132861	12133861	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024182, intron 1 of 12)	intron (NM_024182, intron 1 of 12)	4511.0	NM_024182	66878.0	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-12152604-2	chr6	12152104	12153104	+	674.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-43024.0	NR_003631	625347.0	Mm.389084	NM_001039041	ENSMUSG00000057223	Gm6578	EG625347	mitochondrial ribosomal protein L32 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-117786069-1	chr14	117785569	117786569	+	674.5	f0_balb.idr	intron (NM_011821, intron 4 of 8)	intron (NM_011821, intron 4 of 8)	167778.0	NR_105747	102465148.0		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	0.0	4.0	0.0	0.0	8.0	0.0
Merged-chr11-120067620-2	chr11	120067120	120068120	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009734, intron 18 of 25)	intron (NM_009734, intron 18 of 25)	19207.0	NM_009734	12009.0	Mm.2556	NM_009734	ENSMUSG00000039781	Cep131	AZ1|Azi|Azi1	centrosomal protein 131	protein-coding	2.5	0.0	0.0	0.0	0.0	0.0
Merged-chr1-72214706-1	chr1	72214206	72215206	+	674.5	f0_balb.idr	Intergenic	Intergenic	-2392.0	NM_001357488	381269.0	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-4031795-2	chr9	4031295	4032295	+	674.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	277699.0	NM_026276	67618.0	Mm.33970	NM_026276	ENSMUSG00000025894	Aasdhppt	2010309J24Rik|2810407B07Rik|AASD-PPT|CGI-80|LYS2|LYS5	aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27737971-2	chr2	27737471	27738471	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 2 of 9)	intron (NM_001290481, intron 2 of 9)	27388.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5715482-2	chr2	5714982	5715982	+	674.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177343)	promoter-TSS (NM_177343)	-720.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22316396-2	chr16	22315896	22316896	+	674.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21408.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63407733-2	chr14	63407233	63408233	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007549, intron 1 of 12)	intron (NM_007549, intron 1 of 12)	9454.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102257239-2	chr15	102256739	102257739	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011244, intron 1 of 9)	CpG	283.0	NM_011244	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90508322-3	chr3	90507836	90508836	+	674.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293777, intron 1 of 5)	intron (NM_001293777, intron 1 of 5)	1162.0	NM_001293776	66511.0	Mm.154136	NM_023215	ENSMUSG00000001017	Chtop	2500003M10Rik|Fop|Srag	chromatin target of PRMT1	protein-coding	7.0	7.0	4.0	5.5	11.0	5.5
Merged-chr1-128746903-2	chr1	128746393	128747393	+	674.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-154594.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	1.0	7.0	14.5	15.0	8.0	23.5
Merged-chr9-61886194-2	chr9	61885694	61886694	+	674.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28316.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152759545-2	chr3	152759045	152760045	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025662, intron 9 of 10)	(TG)n|Simple_repeat|Simple_repeat	45445.0	NM_025662	329777.0	Mm.331447	NM_025662	ENSMUSG00000039047	Pigk	3000001O05Rik|Gm38470|PIG-K	phosphatidylinositol glycan anchor biosynthesis, class K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52869813-2	chr2	52869313	52870313	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	11945.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152801256-2	chr1	152800756	152801756	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 1 of 15)	B1F|SINE|Alu	1103.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-37905675-2	chr6	37905175	37906175	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001272076, intron 2 of 18)	intron (NM_001272076, intron 2 of 18)	5188.0	NM_001272076	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122106302-2	chr5	122105802	122106802	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010861, intron 6 of 6)	intron (NM_010861, intron 6 of 6)	5351.0	NM_010861	17906.0	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32224627-2	chr18	32224127	32225127	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011946, intron 15 of 16)	PB1|SINE|Alu	-15704.0	NM_133658	13872.0	Mm.282335	NM_133658	ENSMUSG00000024382	Ercc3	BTF2 p89|Ercc-3|XPB	excision repair cross-complementing rodent repair deficiency, complementation group 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-35880347-2	chr13	35879847	35880847	+	674.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	26000.0	NM_145938	208366.0	Mm.35545	NM_145938	ENSMUSG00000021418	Rpp40	D8Bwg1265e|Rnasep1	ribonuclease P 40 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71293318-2	chr8	71292804	71293804	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	B4|SINE|B4	20590.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	11.0	25.0	40.0	19.5	32.0	18.5
Merged-chr15-97112019-2	chr15	97111519	97112519	+	674.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55225.0	NR_155278	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101881090-2	chr7	101880590	101881590	+	674.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291353)	promoter-TSS (NM_001291353)	-235.0	NM_001291353	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-101800481-2	chr2	101799981	101800981	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	-2774.0	NM_001083810	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20806087-2	chr11	20805587	20806587	+	674.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	25021.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	0.5	0.0	1.0	1.5	0.0	0.0
Merged-chr13-109907785-1	chr13	109907285	109908285	+	674.5	f0_balb.idr	intron (NM_011056, intron 8 of 16)	intron (NM_011056, intron 8 of 16)	3976.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100643473-3	chr5	100642966	100643966	+	674.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30790.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	12.0	20.0	16.5	11.0	21.5	14.0
Merged-chr6-87733401-2	chr6	87732901	87733901	+	674.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159697, intron 2 of 7)	MIRb|SINE|MIR	2532.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	2.0	2.0	0.0	15.5	2.0	0.0
Merged-chr12-12276081-2	chr12	12275581	12276581	+	674.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	13942.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34666292-3	chr19	34665804	34666804	+	674.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25415.0	NM_008331	15957.0	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84212291-3	chr15	84211787	84212787	+	674.377747	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178614, intron 14 of 14)	intron (NM_178614, intron 14 of 14)	-19756.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	2.0	7.0	0.0	0.0	2.0	0.0
Merged-chr2-25186010-6	chr2	25185546	25186546	+	674.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	5288.0	NM_025980	67122.0	Mm.46539	NM_025980	ENSMUSG00000078202	Nrarp	2700054M22Rik	Notch-regulated ankyrin repeat protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43748618-2	chr7	43748118	43749118	+	674.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_077063, intron 2 of 2)	MLTR14|LTR|ERV1	7318.0	NR_077063	100504720.0	Mm.226595	NR_077063		2310002F09Rik	-	RIKEN cDNA 2310002F09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-47156862-2	chr11	47156362	47157362	+	674.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 3 of 7)	B4A|SINE|B4	222440.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	16.0	6.0	6.0	6.0	2.0	0.5
Merged-chr13-17746335-2	chr13	17745831	17746831	+	674.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027118, intron 7 of 13)	intron (NM_027118, intron 7 of 13)	-1142.0	NR_035412	100316665.0		NR_035412	ENSMUSG00000080574	Mir466i	Mirn466i|mmu-mir-466i	microRNA 466i	ncRNA	2.0	5.5	6.0	4.0	12.0	7.5
Merged-chr2-180025834-2	chr2	180025334	180026334	+	674.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177727, intron 1 of 8)	intron (NM_177727, intron 1 of 8)	847.0	NM_177727	241846.0	Mm.21577	NM_177727	ENSMUSG00000039108	Lsm14b	9430078B04|BC040823	LSM family member 14B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135106058-3	chr1	135105554	135106554	+	674.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033409)	promoter-TSS (NM_001033409)	-778.0	NM_001033409	329252.0	Mm.279594	NM_001033409	ENSMUSG00000042793	Lgr6	A530037C04Rik|D830026M09	leucine-rich repeat-containing G protein-coupled receptor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37997836-3	chr13	37997238	37998238	+	674.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3530.0	NM_001360842	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr13-101722806-3	chr13	101722337	101723337	+	674.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	-30207.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27684189-3	chr2	27683690	27684690	+	674.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	6989.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19256760-3	chr7	19256267	19257267	+	674.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001282021)	TTS (NM_001282021)	15087.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71666568-3	chr8	71666108	71667108	+	674.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 2 of 41)	intron (NM_001029873, intron 2 of 41)	5149.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	0.0	4.0	3.0	3.0	0.0	1.5
Merged-chr10-8519841-3	chr10	8519336	8520336	+	674.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1011.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140845011-3	chr5	140844502	140845502	+	674.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14571.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96645491-2	chr3	96644951	96645951	+	674.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302471)	promoter-TSS (NM_001302471)	-133.0	NM_001302471	213119.0	Mm.32741	NM_001081053	ENSMUSG00000090210	Itga10	A630048L14	integrin, alpha 10	protein-coding	0.0	0.0	1.5	0.0	1.5	0.0
Merged-chr4-63686288-4	chr4	63685772	63686772	+	674.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51851.0	NR_151544	102632940.0	Mm.399154	NR_151544	ENSMUSG00000086817	Gm11482	-	predicted gene 11482	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71230245-2	chr17	71229745	71230745	+	674.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357791, intron 5 of 19)	intron (NM_001357791, intron 5 of 19)	25591.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	4.0	3.0	4.5	5.0	3.5	7.5
Merged-chr7-101413739-2	chr7	101413239	101414239	+	674.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7952.0	NM_001008548	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	0.0	0.0	1.5	5.5	0.5	0.5
Merged-chr9-32676295-3	chr9	32675787	32676787	+	674.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19755.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139201703-2	chr5	139201203	139202203	+	674.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359496, intron 1 of 20)	intron (NM_001359496, intron 1 of 20)	1066.0	NM_001359494	77053.0	Mm.210845	NM_024451	ENSMUSG00000036817	Sun1	4632417G13Rik|5730434D03Rik|Unc84a|mKIAA0810	Sad1 and UNC84 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-89101208-2	chr11	89100706	89101706	+	674.233337	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27365.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	0.0	22.0	4.5	0.0	6.5	3.0
Merged-chr3-9341733-3	chr3	9341247	9342247	+	674.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61331.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61457037-3	chr11	61456542	61457542	+	674.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-3050.0	NM_001291024	22671.0	Mm.89201	NM_009548	ENSMUSG00000010086	Rnf112	ZNF179|Zfp179|bfp|neurolastin	ring finger protein 112	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-130770816-3	chr7	130770261	130771261	+	674.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	-3308.0	NM_001081038	330660.0	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39958486-2	chr10	39957986	39958986	+	674.166687	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001113388, exon 4 of 4)	3' UTR (NM_001113388, exon 4 of 4)	1667.0	NM_001173500	100041085.0	Mm.332530	NM_001173500	ENSMUSG00000071335	Mfsd4b3	G630090E17Rik|Naglt1c	major facilitator superfamily domain containing 4B3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44640346-2	chr9	44639846	44640846	+	674.166687	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_181324, exon 14 of 14)	3' UTR (NM_181324, exon 14 of 14)	-32887.0	NM_001277851	58866.0	Mm.45380	NM_021481	ENSMUSG00000032098	Treh	2210412M19Rik	trehalase (brush-border membrane glycoprotein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86882021-2	chr12	86881477	86882477	+	674.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_145836, exon 1 of 1)	exon (NM_145836, exon 1 of 1)	2837.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118487167-4	chr2	118486640	118487640	+	674.125	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7444.0	NM_009273	20813.0	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	1.0	5.0	4.5	8.5	2.5	3.5
Merged-chr3-31090705-2	chr3	31090205	31091205	+	674.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4353.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39257969-3	chr6	39257570	39258570	+	674.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51297.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41895135-2	chr19	41894642	41895642	+	674.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_199447, intron 2 of 33)	intron (NM_199447, intron 2 of 33)	1011.0	NM_199447	107094.0	Mm.276044	NM_199447	ENSMUSG00000035049	Rrp12	AA408556|AA536972|mKIAA0690	ribosomal RNA processing 12 homolog (S. cerevisiae)	protein-coding	0.5	0.0	5.5	4.5	2.0	0.0
Merged-chr7-141368560-2	chr7	141368060	141369060	+	674.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3450.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	12.5	21.0	6.5	9.0	12.5	9.5
Merged-chr18-37518356-1	chr18	37517856	37518856	+	674.0	f0_balb.idr	promoter-TSS (NM_053147)	promoter-TSS (NM_053147)	3.0	NM_053147	93893.0	Mm.348054	NM_053147	ENSMUSG00000073591	Pcdhb22	Pcdhb15|PcdhbV	protocadherin beta 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47925824-1	chr19	47925324	47926324	+	674.0	f1_c57bl6.idr	Intergenic	Intergenic	-6525.0	NM_001001738	414801.0	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36680550-1	chr18	36680050	36681050	+	674.0	f1_balb.idr	5' UTR (NM_001083317, exon 2 of 4)	5' UTR (NM_001083317, exon 2 of 4)	-1184.0	NM_146085	225372.0	Mm.89673	NM_146085	ENSMUSG00000006050	Apbb3	Fe65l2|Rirl2|TR2S	amyloid beta (A4) precursor protein-binding, family B, member 3	protein-coding	4.0	5.0	5.0	3.5	5.5	9.0
Merged-chr13-48842013-1	chr13	48841513	48842513	+	674.0	f0_balb.idr	intron (NM_011078, intron 1 of 21)	intron (NM_011078, intron 1 of 21)	28872.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-166799262-2	chr1	166798762	166799762	+	674.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-117417.0	NM_001347135	240894.0	Mm.246610	NM_172844	ENSMUSG00000026560	Fmo9	4831428F09Rik	flavin containing monooxygenase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137032110-2	chr5	137031610	137032610	+	674.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001039385, exon 2 of 2)	exon (NM_001039385, exon 2 of 2)	1815.0	NM_001039385	381677.0	Mm.389697	NM_001039385	ENSMUSG00000037428	Vgf	Gm1052	VGF nerve growth factor inducible	protein-coding	0.0	1.5	2.5	2.0	0.0	1.5
Merged-chr7-90038394-2	chr7	90037885	90038885	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 3 of 5)	MTEa|LTR|ERVL-MaLR	9226.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	58.5	103.0	98.0	91.0	109.0	75.0
Merged-chr16-55601109-2	chr16	55600609	55601609	+	674.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106378.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-172779988-2	chr2	172779426	172780426	+	674.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	160395.0	NM_007557	12162.0	Mm.595	NM_007557	ENSMUSG00000008999	Bmp7	OP1	bone morphogenetic protein 7	protein-coding	0.0	0.0	0.0	4.0	3.5	4.5
Merged-chr1-125439004-2	chr1	125438504	125439504	+	674.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3277.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107845061-3	chr13	107844561	107845561	+	674.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	45003.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr14-9401045-1	chr14	9400545	9401545	+	674.0	f0_balb.idr	Intergenic	Intergenic	-483050.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-101082479-1	chr12	101081979	101082979	+	674.0	f0_balb.idr	promoter-TSS (NR_038047)	promoter-TSS (NR_038047)	28.0	NR_038049	319760.0	Mm.440198	NM_176997	ENSMUSG00000097121	D130020L05Rik	9430007L23Rik	RIKEN cDNA D130020L05 gene	ncRNA	10.0	7.5	3.0	7.5	3.0	3.5
Merged-chr8-56480086-1	chr8	56479586	56480586	+	674.0	f1_c57bl6.idr	intron (NR_131020, intron 1 of 2)	L1_Mur3|LINE|L1	4882.0	NR_131020	75123.0	Mm.72666	NR_131020	ENSMUSG00000110310	4930518J21Rik	-	RIKEN cDNA 4930518J21 gene	ncRNA	2.5	4.0	4.5	2.0	1.5	0.0
Merged-chr2-42628305-2	chr2	42627805	42628805	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053011, intron 1 of 90)	Lx4B|LINE|L1	25293.0	NM_053011	94217.0	Mm.441398	NM_053011	ENSMUSG00000049252	Lrp1b	9630004P12Rik|LRP-DIT	low density lipoprotein-related protein 1B (deleted in tumors)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45019530-2	chr7	45019030	45020030	+	674.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360132)	promoter-TSS (NM_001360132)	60.0	NM_001360132	20130.0	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111881853-2	chr8	111881353	111882353	+	674.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5178.0	NM_025781	66817.0	Mm.345350	NM_025781	ENSMUSG00000031953	Tmem170	9030409E16Rik|AA403674|D8Bwg1414e|Tmem170a	transmembrane protein 170	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-61021720-1	chr19	61021220	61022220	+	674.0	f0_balb.idr	intron (NM_018869, intron 2 of 15)	intron (NM_018869, intron 2 of 15)	119120.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	4.0	1.0	0.0	0.0	16.0	7.0
Merged-chr18-22799657-2	chr18	22799157	22800157	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361224, intron 7 of 10)	intron (NM_001361224, intron 7 of 10)	239006.0	NM_001161483	319211.0	Mm.209896	NM_199024	ENSMUSG00000041923	Nol4	1700013J13Rik|4930568N03Rik|Gm1262	nucleolar protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-138378396-2	chr7	138377896	138378896	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183289, intron 3 of 11)	intron (NM_183289, intron 3 of 11)	19334.0	NM_183289	70571.0	Mm.334297	NM_183289	ENSMUSG00000091002	Tcerg1l	5730476P14Rik	transcription elongation regulator 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95501549-1	chr11	95501049	95502049	+	674.0	f1_c57bl6.idr	Intergenic	Intergenic	13016.0	NM_130858	104079.0	Mm.22970	NM_130858	ENSMUSG00000046719	Nxph3	-	neurexophilin 3	protein-coding	0.0	7.5	0.0	2.0	0.0	2.5
Merged-chr7-100850144-2	chr7	100849644	100850644	+	674.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177073, exon 6 of 11)	exon (NM_177073, exon 6 of 11)	13269.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44379151-2	chr19	44378651	44379651	+	674.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28558.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.0	0.0	1.0	0.0	8.0	0.0
Merged-chr17-32528436-2	chr17	32527936	32528936	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101445, intron 12 of 12)	intron (NM_001101445, intron 12 of 12)	-8121.0	NM_001356302	70101.0	Mm.30504	NM_024442	ENSMUSG00000048440	Cyp4f16	2310021J05Rik|AI746515	cytochrome P450, family 4, subfamily f, polypeptide 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-121451744-1	chr2	121451244	121452244	+	674.0	f1_balb.idr	non-coding (NR_110986, exon 3 of 3)	non-coding (NR_110986, exon 3 of 3)	2546.0	NR_110986	378702.0	Mm.262252	NM_011354	ENSMUSG00000074884	Serf2	C80083|Msmac1l|m4F5rel	small EDRK-rich factor 2	protein-coding	24.5	62.0	44.0	18.5	54.5	46.5
Merged-chr15-78591035-2	chr15	78590535	78591535	+	674.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-6012.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	1.5	15.5	15.0	6.0	30.5	8.5
Merged-chr11-34028602-2	chr11	34028102	34029102	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-18326.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-74999671-1	chr8	74999171	75000171	+	674.0	f0_balb.idr	exon (NM_178017, exon 3 of 11)	exon (NM_178017, exon 3 of 11)	6021.0	NM_178017	70823.0	Mm.261739	NM_178017	ENSMUSG00000034518	Hmgxb4	4733401K04Rik|AI316803|Hmgb2l1	HMG box domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122819016-2	chr10	122818516	122819516	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 4 of 9)	intron (NM_001110218, intron 4 of 9)	139701.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	5.5	5.5	6.0	1.0	1.5	0.0
Merged-chr5-143058459-1	chr5	143057959	143058959	+	674.0	f0_balb.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	54561.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-68012015-2	chr16	68011515	68012515	+	674.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-391107.0	NM_178721	239857.0	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0.0	0.5	1.0	2.5	0.0	0.0
Merged-chr12-32637747-3	chr12	32637228	32638228	+	674.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-182607.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	11.5	4.0	3.0	6.0	4.5	4.5
Merged-chr2-33871072-3	chr2	33870574	33871574	+	674.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 2 of 9)	intron (NM_175184, intron 2 of 9)	16872.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57467004-2	chr9	57466504	57467504	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301635, intron 1 of 5)	intron (NM_001301635, intron 1 of 5)	1056.0	NM_001301634	56807.0	Mm.102278	NM_020270	ENSMUSG00000040722	Scamp5	Sc5	secretory carrier membrane protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97251157-1	chr6	97250657	97251657	+	674.0	f1_c57bl6.idr	intron (NM_001081157, intron 1 of 2)	intron (NM_001081157, intron 1 of 2)	1623.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	11.5	11.0	0.0	1.0	2.0	3.0
Merged-chr11-54214842-2	chr11	54214342	54215342	+	674.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1554.0	NR_045506	71056.0	Mm.56332	NR_045506	ENSMUSG00000086209	4933405E24Rik	-	RIKEN cDNA 4933405E24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-23007910-2	chr2	23007410	23008410	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	intron (NM_001077190, intron 1 of 10)	32331.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-90955391-1	chr8	90954891	90955891	+	674.0	f0_c57.idr	intron (NM_177224, intron 3 of 39)	intron (NM_177224, intron 3 of 39)	23142.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	48.0	74.0	51.5	26.5	45.5	26.5
Merged-chr7-12977194-1	chr7	12976694	12977694	+	674.0	f1_c57bl6.idr	promoter-TSS (NM_001168561)	promoter-TSS (NM_001168561)	-654.0	NM_175558	269870.0	Mm.62083	NM_175558	ENSMUSG00000033961	Zfp446	A630035I11Rik|A930031C22|AA120513|AV306632	zinc finger protein 446	protein-coding	16.5	18.5	7.5	2.5	6.5	5.0
Merged-chr19-3645937-2	chr19	3645437	3646437	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008513, intron 5 of 22)	intron (NM_008513, intron 5 of 22)	40627.0	NM_008513	16973.0	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79257889-2	chr11	79257389	79258389	+	674.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-3194.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	6.5	11.0	5.5	7.0	11.0	5.5
Merged-chr10-10474067-1	chr10	10473567	10474567	+	674.0	f1_balb.idr	Intergenic	Intergenic	-1753.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	16.5	22.0	5.5	6.5	9.0	3.5
Merged-chr4-85374229-2	chr4	85373734	85374734	+	674.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_019535, intron 3 of 8)	intron (NM_019535, intron 3 of 8)	168778.0	NM_019535	20404.0	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding	2.0	10.0	11.0	0.0	0.0	5.0
Merged-chr19-60579767-1	chr19	60579267	60580267	+	674.0	f1_c57bl6.idr	intron (NM_001172097, intron 1 of 6)	intron (NM_001172097, intron 1 of 6)	1256.0	NM_001172097	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	32.0	33.0	40.0	15.0	14.0	25.5
Merged-chr17-34134951-2	chr17	34134400	34135400	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360530, intron 1 of 5)	PB1D9|SINE|Alu	9382.0	NM_001360530	14998.0	Mm.16373	NM_010386	ENSMUSG00000037649	H2-DMa	H-2Ma|H2-Ma	histocompatibility 2, class II, locus DMa	protein-coding	3.5	15.0	2.0	2.0	13.5	1.0
Merged-chr5-64693819-1	chr5	64693319	64694319	+	674.0	f1_c57bl6.idr	Intergenic	Intergenic	-83120.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	3.5	8.0	15.0	1.5	2.0	2.0
Merged-chr15-81938537-2	chr15	81938037	81939037	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145473, intron 1 of 3)	intron (NM_145473, intron 1 of 3)	1778.0	NM_145473	105859.0	Mm.22524	NM_145473	ENSMUSG00000042109	Csdc2	AI415250|AI481750|Pippin	cold shock domain containing C2, RNA binding	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-143151670-2	chr6	143151170	143152170	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153819, intron 2 of 8)	intron (NR_153819, intron 2 of 8)	2261.0	NR_153819	102633311.0	Mm.333484	NR_153819		Gm31108	Gm31169	predicted gene, 31108	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41312555-2	chr19	41312057	41313057	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 8 of 16)	intron (NM_031376, intron 8 of 16)	-48553.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	6.0	14.0	0.5	0.0	2.5	3.0
Merged-chr17-9775888-2	chr17	9775388	9776388	+	674.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045433)	promoter-TSS (NR_045433)	-22.0	NR_045433	71092.0	Mm.243827	NR_045433		4930452A19Rik	4933424P20Rik	RIKEN cDNA 4930452A19 gene	ncRNA	1.5	0.5	1.5	0.0	3.0	0.5
Merged-chr7-84338784-2	chr7	84338284	84339284	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007488, intron 5 of 18)	intron (NM_007488, intron 5 of 18)	71254.0	NM_007488	11864.0	Mm.38594	NM_007488	ENSMUSG00000015709	Arnt2	Hif-2b|bHLHe1|mKIAA0307	aryl hydrocarbon receptor nuclear translocator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25584821-2	chr9	25584321	25585321	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 4 of 7)	intron (NM_026189, intron 4 of 7)	103224.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96917886-2	chr11	96917386	96918386	+	674.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1372.0	NM_030248	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129922874-1	chr6	129922374	129923374	+	674.0	f0_balb.idr	Intergenic	IAPEY3-int|LTR|ERVK	-9650.0	NM_008463	16636.0	Mm.14111	NM_008463	ENSMUSG00000030173	Klra5	Ly49e	killer cell lectin-like receptor, subfamily A, member 5	protein-coding	0.0	16.0	0.5	0.0	0.0	4.0
Merged-chr7-19019629-2	chr7	19019129	19020129	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008260, intron 1 of 1)	L2a|LINE|L2	3910.0	NM_008260	15377.0	Mm.42260	NM_008260	ENSMUSG00000040891	Foxa3	Hnf-3g|Hnf3g|Tcf-3g|Tcf3g	forkhead box A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180228598-2	chr1	180228098	180229098	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128605, intron 10 of 10)	intron (NM_001128605, intron 10 of 10)	17352.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65729788-2	chr17	65729288	65730288	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	L1MEg|LINE|L1	42964.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76230279-2	chr16	76229779	76230779	+	674.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	107666.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99271351-2	chr5	99270851	99271851	+	674.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-18424.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	6.0	7.0	16.0	8.0	8.5	6.5
Merged-chr5-105748547-2	chr5	105748055	105749055	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122768, intron 2 of 2)	B1_Mur4|SINE|Alu	47745.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.0	1.5	6.5	8.5	0.0	3.5
Merged-chr2-27381449-1	chr2	27380949	27381949	+	674.0	f0_balb.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	46159.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9945147-2	chr19	9944647	9945647	+	674.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-35453.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.5	1.0	0.5	0.5	1.0	0.5
Merged-chr12-3373418-2	chr12	3372918	3373918	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008445, intron 1 of 7)	ID_B1|SINE|B4	8286.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6308267-2	chr19	6307767	6308767	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033342, intron 1 of 36)	intron (NM_001033342, intron 1 of 36)	1810.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86692061-2	chr4	86691562	86692562	+	674.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-22003.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	3.0	8.5	3.5	0.0	20.0	3.0
Merged-chr4-155409305-2	chr4	155408805	155409805	+	674.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_102283, exon 5 of 5)	non-coding (NR_102283, exon 5 of 5)	115.0	NM_001166029	544678.0	Mm.472798	NM_177674	ENSMUSG00000078490	Cfap74	2010015L04Rik|A530045M11	cilia and flagella associated protein 74	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53070689-2	chr4	53070189	53071189	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 25 of 49)	intron (NM_013454, intron 25 of 49)	58809.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99086503-2	chr10	99086003	99087003	+	674.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-20579.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82177966-2	chr11	82177466	82178466	+	673.983337	f1_balb.idr|f1_c57bl6.idr	intron (NM_011329, intron 2 of 2)	intron (NM_011329, intron 2 of 2)	1846.0	NM_011329	20290.0	Mm.1283	NM_011329	ENSMUSG00000020702	Ccl1	BF534335|I-309|P500|Scya1|Tca-3|Tca3	chemokine (C-C motif) ligand 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119189501-4	chr2	119188982	119189982	+	673.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139139, intron 1 of 10)	intron (NM_139139, intron 1 of 10)	14973.0	NM_001039223	623781.0	Mm.389344	NM_001039223	ENSMUSG00000055926	Gm14137	-	predicted gene 14137	protein-coding	5.0	0.0	4.0	9.0	0.5	2.0
Merged-chr14-76077241-2	chr14	76076741	76077741	+	673.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33574.0	NM_026177	67467.0	Mm.260767	NM_026177	ENSMUSG00000022008	Gpalpp1	1200011I18Rik|Kiaa1704	GPALPP motifs containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107976210-2	chr9	107975710	107976710	+	673.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_023738, intron 3 of 23)	intron (NM_023738, intron 3 of 23)	643.0	NM_023738	74153.0	Mm.277125	NM_023738	ENSMUSG00000032596	Uba7	1300004C08Rik|Ube1l	ubiquitin-like modifier activating enzyme 7	protein-coding	18.0	23.0	5.5	4.5	7.0	7.0
Merged-chr11-79525754-2	chr11	79525254	79526254	+	673.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033711)	TTS (NM_001033711)	-1992.0	NM_001077496	216984.0	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-60611979-3	chr3	60611377	60612377	+	673.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 3 of 7)	intron (NM_001253711, intron 3 of 7)	110698.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	4.0	7.0	3.0	1.5	7.5	6.0
Merged-chr10-117709501-3	chr10	117709023	117710023	+	673.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001288586, intron 2 of 10)	intron (NM_001288586, intron 2 of 10)	1235.0	NM_010786	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-32509806-3	chr14	32509331	32510331	+	673.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3690.0	NM_001081221	319955.0	Mm.318310	NM_001081221	ENSMUSG00000054051	Ercc6	4732403I04|C130058G22Rik|CSB	excision repair cross-complementing rodent repair deficiency, complementation group 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42635871-2	chr10	42635371	42636371	+	673.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-43045.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3930372-2	chr19	3929872	3930872	+	673.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026316)	promoter-TSS (NM_026316)	-656.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4527340-2	chr7	4526840	4527840	+	673.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033548, intron 6 of 11)	intron (NM_001033548, intron 6 of 11)	-4812.0	NM_009406	21954.0	Mm.27674	NM_009406	ENSMUSG00000035458	Tnni3	Tn1|cTnI	troponin I, cardiac 3	protein-coding	4.0	5.0	2.5	1.0	1.5	0.5
Merged-chr11-114891956-2	chr11	114891456	114892456	+	673.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359812, intron 2 of 7)	B4|SINE|B4	1915.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-195013808-2	chr1	195013308	195014308	+	673.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3591.0	NR_015566	320977.0	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3346768-2	chr12	3346268	3347268	+	673.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18364.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88281259-2	chr1	88280759	88281759	+	673.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3680.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40738732-2	chr19	40738232	40739232	+	673.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 9 of 9)	intron (NM_001304721, intron 9 of 9)	78962.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122079642-4	chr14	122079153	122080153	+	673.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27321.0	NR_015586	319727.0	Mm.215552	NR_015586		A330035P11Rik	-	RIKEN cDNA A330035P11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94550730-2	chr11	94550230	94551230	+	673.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER70A|LTR|ERVL	-1523.0	NM_001013381	237926.0	Mm.342275	NM_001013381	ENSMUSG00000039096	Rsad1	B430319G23|BC056485	radical S-adenosyl methionine domain containing 1	protein-coding	0.0	0.0	3.5	5.0	0.5	0.0
Merged-chr10-67984785-3	chr10	67984275	67985275	+	673.611145	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_001359319, intron 1 of 11)	intron (NM_001359319, intron 1 of 11)	5205.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	4.5	5.0	10.5	18.5	25.0	4.0
Merged-chr7-109516916-5	chr7	109516458	109517458	+	673.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2237.0	NM_011975	26451.0	Mm.305750	NM_011975	ENSMUSG00000046364	Rpl27a	L27'|L27A|L29	ribosomal protein L27A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-55293210-4	chr3	55292716	55293716	+	673.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357475, intron 3 of 16)	intron (NM_001357475, intron 3 of 16)	50852.0	NM_001357466	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.0	5.0	0.0	0.0	5.0	0.0
Merged-chr10-99162037-3	chr10	99161509	99162509	+	673.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027740, intron 9 of 11)	intron (NM_027740, intron 9 of 11)	53874.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125272849-2	chr5	125272349	125273349	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	68245.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-121010596-2	chr4	121010096	121011096	+	673.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	6651.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	36.5	129.0	65.0	16.0	47.5	38.5
Merged-chr15-93576049-3	chr15	93575549	93576549	+	673.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033217, intron 1 of 7)	intron (NM_001033217, intron 1 of 7)	19842.0	NM_001033217	106042.0	Mm.150314	NM_001033217	ENSMUSG00000036158	Prickle1	1110058P22Rik|AW215793|Prickle|b2b019Clo|mpk1	prickle planar cell polarity protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45064865-2	chr7	45064365	45065365	+	673.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163684, intron 1 of 8)	B1_Mur3|SINE|Alu	2436.0	NM_025533	66394.0	Mm.272139	NM_025533	ENSMUSG00000003421	Nosip	2310061K06Rik|CGI-25	nitric oxide synthase interacting protein	protein-coding	0.5	2.5	2.0	1.0	1.5	0.0
Merged-chr10-78451445-2	chr10	78450945	78451945	+	673.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172134, intron 3 of 10)	intron (NM_172134, intron 3 of 10)	-6288.0	NR_105873	102466762.0		NR_105873	ENSMUSG00000098279	Mir6908	Gm27827|mmu-mir-6908	microRNA 6908	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-157578719-2	chr3	157578219	157579219	+	673.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359745, intron 1 of 3)	MTEb|LTR|ERVL-MaLR	11827.0	NM_011196	19218.0	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	2.5	0.0	1.0	0.0	0.0	0.0
Merged-chr11-117965640-2	chr11	117965140	117966140	+	673.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007707)	TTS (NM_007707)	3726.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-82233528-2	chr12	82233028	82234028	+	673.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 1 of 23)	intron (NM_001167983, intron 1 of 23)	63512.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55206909-2	chr19	55206409	55207409	+	673.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 16 of 20)	intron (NM_001081076, intron 16 of 20)	14231.0	NR_106146	102465990.0		NR_106146	ENSMUSG00000098289	Mir6715	Gm27474|mmu-mir-6715	microRNA 6715	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123343392-1	chr4	123342892	123343892	+	673.5	f0_balb.idr	promoter-TSS (NM_001256019)	promoter-TSS (NM_001256019)	-140.0	NM_007558	12163.0	Mm.439749	NM_007558	ENSMUSG00000032726	Bmp8a	Bmp7r1|OP-2|OP2	bone morphogenetic protein 8a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36746406-2	chr18	36745906	36746906	+	673.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011879, intron 2 of 19)	B4A|SINE|B4	1750.0	NM_011879	24010.0	Mm.30234	NM_011879	ENSMUSG00000024474	Ik	MuRED	IK cytokine	protein-coding	11.0	11.0	11.5	3.5	17.5	15.5
Merged-chr19-3845299-2	chr19	3844799	3845799	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-6474.0	NM_001271496	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-144929664-2	chr4	144929164	144930164	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36527.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37707289-2	chr13	37706789	37707789	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118749.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr1-189054394-2	chr1	189053894	189054894	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-46554.0	NR_153196	226823.0	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-82670045-2	chr10	82669545	82670545	+	673.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029102, intron 3 of 9)	B1F1|SINE|Alu	20605.0	NM_029102	74782.0	Mm.191281	NM_029102	ENSMUSG00000020251	Glt8d2	1110021D20Rik	glycosyltransferase 8 domain containing 2	protein-coding	4.5	4.0	2.5	4.0	0.0	0.0
Merged-chr17-57187430-2	chr17	57186930	57187930	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	6751.0	NM_019418	50930.0	Mm.483369	NM_019418	ENSMUSG00000005824	Tnfsf14	HVEM-L|HVEML|LIGHT|LTg|Ly113|Tnlg1d	tumor necrosis factor (ligand) superfamily, member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70609997-2	chr11	70609497	70610497	+	673.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045964, intron 22 of 32)	intron (NM_001045964, intron 22 of 32)	-5897.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125128703-2	chr6	125128154	125129154	+	673.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346610, intron 37 of 38)	intron (NM_001346610, intron 37 of 38)	-3229.0	NM_138747	110109.0	Mm.29203	NM_138747	ENSMUSG00000038279	Nop2	120kDa|A530002O17|Nol1	NOP2 nucleolar protein	protein-coding	0.0	1.0	0.0	1.5	0.0	3.5
Merged-chr9-7220145-2	chr9	7219645	7220645	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35640.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3821403-2	chr12	3820903	3821903	+	673.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	14243.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100735034-2	chr12	100734523	100735523	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-9903.0	NM_153587	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	3.0	2.0	6.0	7.5	4.5	4.0
Merged-chr6-136814464-2	chr6	136813964	136814964	+	673.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_021714, exon 12 of 12)	exon (NM_021714, exon 12 of 12)	6216.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	3.5	2.0	7.0	2.0	5.5	7.5
Merged-chr18-36019914-2	chr18	36019414	36020414	+	673.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167891, intron 9 of 9)	intron (NM_001167891, intron 9 of 9)	55084.0	NR_110349	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167840514-2	chr2	167840014	167841014	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91813.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91993259-1	chr2	91992759	91993759	+	673.5	f1_balb.idr	intron (NM_011957, intron 4 of 11)	intron (NM_011957, intron 4 of 11)	-29696.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	2.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-63850290-2	chr17	63849790	63850790	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13691.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-114928340-2	chr4	114927840	114928840	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2327.0	NM_015758	30923.0	Mm.377122	NM_015758	ENSMUSG00000044518	Foxe3	FREAC8|dyl|rct	forkhead box E3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-63315998-2	chr15	63315498	63316498	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	163610.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18049669-2	chr2	18049169	18050169	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1220.0	NM_028317	72668.0	Mm.102183	NM_028317	ENSMUSG00000054074	Skida1	2810030E01Rik|5730507N06Rik|BB088113|DLN-1	SKI/DACH domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97138442-2	chr15	97137942	97138942	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	28802.0	NR_155278	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132379037-2	chr4	132378537	132379537	+	673.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161797, intron 3 of 12)	intron (NM_001161797, intron 3 of 12)	-25351.0	NR_003270	399101.0	Mm.486919	NR_002904	ENSMUSG00000085241	Snhg3	Rnu17d|U17HG	small nucleolar RNA host gene 3	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-41830225-2	chr2	41829725	41830725	+	673.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053011, intron 3 of 90)	intron (NM_053011, intron 3 of 90)	617343.0	NR_105754	102465171.0		NR_105754	ENSMUSG00000098660	Mir6336	Gm27584|mmu-mir-6336	microRNA 6336	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-55307992-1	chr15	55307492	55308492	+	673.5	f0_balb.idr	intron (NM_181277, intron 1 of 47)	intron (NM_181277, intron 1 of 47)	242.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-93998208-2	chr11	93997726	93998726	+	673.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027569, intron 1 of 28)	intron (NM_027569, intron 1 of 28)	2135.0	NM_027569	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	2.0	18.0	9.5	26.0	20.0	3.0
Merged-chr18-15196459-2	chr18	15195959	15196959	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45013.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-117927687-2	chr9	117927180	117928180	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112842.0	NM_001286507	27215.0	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	3.0	0.0	0.5	0.0	0.0	0.5
Merged-chr5-112305458-2	chr5	112304958	112305958	+	673.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009419, intron 2 of 6)	L2b|LINE|L2	-20911.0	NM_018783	54723.0	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	0.0	9.5	2.5	0.0	11.5	2.5
Merged-chr15-66747595-2	chr15	66747095	66748095	+	673.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 34 of 47)	intron (NM_009375, intron 34 of 47)	76825.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-37768292-2	chr3	37767792	37768792	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43932.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167749708-2	chr2	167749208	167750208	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	58531.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34743605-2	chr8	34743105	34744105	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64005.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	6.0	6.5	5.0	2.5	2.0	3.5
Merged-chr13-43804791-2	chr13	43804291	43805291	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	19679.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91138210-2	chr2	91137710	91138710	+	673.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001177720, exon 35 of 35)	3' UTR (NM_001177720, exon 35 of 35)	20066.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	0.5	4.0	3.0	0.0	1.5	3.0
Merged-chr10-54032521-3	chr10	54032020	54033020	+	673.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 2 of 12)	intron (NM_008548, intron 2 of 12)	43276.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94640659-2	chr10	94640159	94641159	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47954.0	NR_015524	67723.0	Mm.116284	NR_015524		Cep83os	4932415G12Rik|Ccdc41os1	centrosomal protein 83, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-68364679-3	chr2	68364196	68365196	+	673.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 8 of 17)	intron (NM_016866, intron 8 of 17)	107285.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22566361-3	chr8	22565861	22566861	+	673.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011394, intron 10 of 10)	MIR|SINE|MIR	27452.0	NM_001198998	22335.0	Mm.227704	NM_011696	ENSMUSG00000008892	Vdac3	-	voltage-dependent anion channel 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3896061-2	chr5	3895561	3896561	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2128.0	NM_172135	545725.0	Mm.99593	NM_172135	ENSMUSG00000040429	Mterf1a	4931431L11Rik|9230106K09Rik|Mterf|Mterf1|mTERF1b	mitochondrial transcription termination factor 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90454574-2	chr2	90454074	90455074	+	673.450012	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 11 of 23)	MER58A|DNA|hAT-Charlie	24600.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35114156-3	chr8	35113640	35114640	+	673.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-148450.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	0.5	0.0	0.0	2.5	0.0	0.5
Merged-chr9-68888911-3	chr9	68888417	68889417	+	673.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013646, intron 1 of 10)	intron (NM_013646, intron 1 of 10)	123571.0	NR_033299	320440.0	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	0.0	0.0	0.0	2.5	0.0	0.0
Merged-chr15-97593878-3	chr15	97593384	97594384	+	673.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111938.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-41842133-4	chr15	41841586	41842586	+	673.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 12 of 17)	intron (NR_152565, intron 12 of 17)	11128.0	NM_001130164	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-8996301-5	chr5	8995791	8996791	+	673.366638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023733, intron 2 of 17)	intron (NM_023733, intron 2 of 17)	855.0	NM_023733	74114.0	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-102633151-4	chr9	102632648	102633648	+	673.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181394, intron 2 of 2)	intron (NM_181394, intron 2 of 2)	6852.0	NM_181394	69010.0	Mm.2000	NM_181394	ENSMUSG00000035048	Anapc13	1810004D07Rik|APC13|SWM1	anaphase promoting complex subunit 13	protein-coding	1.5	0.0	0.0	12.5	0.0	0.0
Merged-chr2-84670035-2	chr2	84669535	84670535	+	673.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001037279, exon 3 of 4)	exon (NM_001037279, exon 3 of 4)	673.0	NM_001033166	72657.0	Mm.259293	NM_001033166	ENSMUSG00000076437	Selenoh	2700094K13Rik|Selh	selenoprotein H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-98157763-3	chr3	98157267	98158267	+	673.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-2867.0	NM_027665	71078.0	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54888238-1	chr11	54887738	54888738	+	673.333313	f0_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-14616.0	NM_001329860	14778.0	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	6.0	1.0	1.5	0.0	2.0	1.5
Merged-chr9-44267567-2	chr9	44267067	44268067	+	673.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163742, intron 1 of 9)	intron (NM_001163742, intron 1 of 9)	620.0	NM_001163743	270151.0	Mm.3957	NM_178420	ENSMUSG00000032109	Nlrx1	BC034204|NOD9	NLR family member X1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62387788-3	chr15	62387272	62388272	+	673.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-168321.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	12.5	14.0	2.0	5.5	5.5	10.0
Merged-chr4-12538742-3	chr4	12538233	12539233	+	673.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-366718.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-84079101-3	chr4	84078602	84079602	+	673.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34223.0	NR_130998	78238.0	Mm.243903	NR_130998	ENSMUSG00000085217	6030471H07Rik	-	RIKEN cDNA 6030471H07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-65822814-2	chr6	65822314	65823314	+	673.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_029549, intron 2 of 10)	intron (NM_029549, intron 2 of 10)	43852.0	NM_029549	70779.0	Mm.263355	NM_027547	ENSMUSG00000029913	Prdm5	4432417F03Rik|6530401I24Rik|AI197291|E130112L17Rik|PFM2	PR domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79407400-4	chr8	79406876	79407876	+	673.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-7908.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-6168712-2	chr7	6168212	6169212	+	673.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25A|LTR|ERVK	-3801.0	NM_028316	72667.0	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101889378-2	chr5	101888878	101889878	+	673.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 37 of 66)	intron (NM_172882, intron 37 of 66)	124248.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.0	0.0	0.0	0.0	3.0	0.0
Merged-chr10-98778484-4	chr10	98778009	98779009	+	673.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-136133.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74526840-2	chr17	74526340	74527340	+	673.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1455.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	3.0	27.5	11.5	16.0	26.0	17.0
Merged-chr4-47316543-2	chr4	47316043	47317043	+	673.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36679.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25103835-2	chr8	25103335	25104335	+	673.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_155282, intron 1 of 1)	intron (NR_155282, intron 1 of 1)	1656.0	NR_155282	74744.0	Mm.117802	NR_155282		5830408C22Rik	2700026D01Rik	RIKEN cDNA 5830408C22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136260543-3	chr4	136260049	136261049	+	673.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011542, intron 5 of 10)	intron (NM_011542, intron 5 of 10)	12592.0	NM_011542	21401.0	Mm.112	NM_011542	ENSMUSG00000001604	Tcea3	S-II|SII-K1	transcription elongation factor A (SII), 3	protein-coding	13.5	2.5	2.0	3.5	0.0	1.0
Merged-chr9-64018072-5	chr9	64017528	64018528	+	673.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 1 of 3)	(TCTG)n|Simple_repeat|Simple_repeat	4031.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134227146-2	chr5	134226646	134227646	+	673.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010876, intron 4 of 10)	intron (NM_010876, intron 4 of 10)	2479.0	NM_001286037	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-28943626-3	chr4	28943114	28944114	+	673.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290434, intron 9 of 16)	intron (NM_001290434, intron 9 of 16)	-124465.0	NR_151693	102634169.0		NR_151693		Gm11917	-	predicted gene 11917	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66427527-3	chr7	66427003	66428003	+	673.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053080)	promoter-TSS (NM_053080)	-26.0	NM_053080	56847.0	Mm.140988	NM_053080	ENSMUSG00000015134	Aldh1a3	ALDH6|RALDH3|V1	aldehyde dehydrogenase family 1, subfamily A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-55956957-4	chr7	55956448	55957448	+	673.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023647, intron 1 of 6)	MTD|LTR|ERVL-MaLR	5545.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	47.5	81.5	51.5	71.5	130.0	65.5
Merged-chr17-34129137-2	chr17	34128678	34129678	+	673.06665	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360530, intron 1 of 5)	intron (NM_001360530, intron 1 of 5)	3660.0	NM_001360530	14998.0	Mm.16373	NM_010386	ENSMUSG00000037649	H2-DMa	H-2Ma|H2-Ma	histocompatibility 2, class II, locus DMa	protein-coding	0.0	5.0	4.0	5.0	14.5	9.0
Merged-chr5-43845873-4	chr5	43845407	43846407	+	673.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22902.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	29.0	61.5	52.0	29.5	48.5	45.5
Merged-chr11-51923698-2	chr11	51923198	51924198	+	673.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-43933.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-71360920-2	chr10	71360420	71361420	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027184, intron 1 of 5)	B3|SINE|B2	13157.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-57820269-3	chr11	57819747	57820747	+	673.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11900.0	NM_008213	15110.0	Mm.4746	NM_008213	ENSMUSG00000037335	Hand1	Ehand1|Hxt|Th1|Thing1|bHLHa27|eHAND	heart and neural crest derivatives expressed 1	protein-coding	0.0	1.5	5.0	5.5	0.0	0.0
Merged-chr4-105468717-1	chr4	105468217	105469217	+	673.0	f1_balb.idr	Intergenic	Intergenic	311370.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	14.0	0.5	13.0	0.0	9.5	7.5
Merged-chr10-45289393-2	chr10	45288893	45289893	+	673.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024286)	promoter-TSS (NM_024286)	88.0	NM_024286	78977.0	Mm.24748	NM_024286	ENSMUSG00000019848	Popdc3	AA682104|Pop3	popeye domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-17837833-2	chr5	17837333	17838333	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	-1937.0	NM_007643	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95188505-2	chr9	95188005	95189005	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 14 of 15)	intron (NM_177909, intron 14 of 15)	218765.0	NM_018763	54371.0	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	1.0	3.5	1.0	0.0	3.0	2.0
Merged-chr8-83575526-1	chr8	83575026	83576026	+	673.0	f1_balb.idr	intron (NM_134118, intron 1 of 12)	intron (NM_134118, intron 1 of 12)	8768.0	NM_025843	66916.0	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	12.5	0.0	0.0	11.0	3.0	2.0
Merged-chr18-32435983-2	chr18	32435483	32436483	+	673.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001083334)	TTS (NM_001083334)	-57699.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-63893794-2	chr17	63893294	63894294	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286415, intron 1 of 17)	L1MB7|LINE|L1	15728.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7806788-2	chr9	7806288	7807288	+	673.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	22398.0	NR_049191	100885830.0		NR_049191	ENSMUSG00000093615	Mir5618	Gm23685|mmu-mir-5618	microRNA 5618	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55030013-1	chr1	55029513	55030513	+	673.0	f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-2535.0	NM_031179	81898.0	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	21.0	57.0	44.5	41.5	60.5	76.5
Merged-chr16-24631999-2	chr16	24631499	24632499	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-89856.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102018843-2	chr7	102018343	102019343	+	673.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010531)	promoter-TSS (NM_010531)	-688.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75627540-2	chr11	75627040	75628040	+	673.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008850, exon 12 of 12)	3' UTR (NM_008850, exon 12 of 12)	-3480.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	0.5	6.0	2.0	0.0	1.0	0.5
Merged-chr16-38118952-1	chr16	38118452	38119452	+	673.0	f0_balb.idr	intron (NM_001347232, intron 1 of 11)	B3A|SINE|B2	-29692.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	8.5	32.0	3.5	0.0	5.5	3.5
Merged-chr12-61324759-1	chr12	61324259	61325259	+	673.0	f1_c57bl6.idr	Intergenic	Intergenic	197061.0	NR_045049	100504101.0	Mm.235026	NR_045049	ENSMUSG00000113429	Gm20063	-	predicted gene, 20063	ncRNA	1.0	1.0	0.0	0.0	0.0	1.0
Merged-chr11-60802690-2	chr11	60802190	60803190	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009171, intron 3 of 11)	RMER6B|LTR|ERVK	8575.0	NM_009171	20425.0	Mm.364956	NM_009171	ENSMUSG00000020534	Shmt1	AI324848|AI385541|C81125|Shmt|mshmt|mshmt1|mshmt2	serine hydroxymethyltransferase 1 (soluble)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32658604-1	chr4	32658104	32659104	+	673.0	f1_balb.idr	intron (NM_001081392, intron 1 of 101)	intron (NM_001081392, intron 1 of 101)	1485.0	NM_001081392	100019.0	Mm.24627	NM_133874	ENSMUSG00000058006	Mdn1	4833432B22Rik|A130070M06|AA958993|D4Abb1e|Gm135	midasin AAA ATPase 1	protein-coding	1.5	6.5	8.0	0.0	6.0	1.5
Merged-chr5-122143693-2	chr5	122143193	122144193	+	673.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER119|DNA|hAT-Charlie	-5631.0	NM_183307	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	1.0	3.0	2.0	1.0	3.0	2.0
Merged-chr4-139248820-1	chr4	139248320	139249320	+	673.0	f1_c57bl6.idr	intron (NM_001037761, intron 2 of 9)	intron (NM_001037761, intron 2 of 9)	54709.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	13.5	44.0	28.5	24.5	18.0	24.5
Merged-chr8-120534631-2	chr8	120534131	120535131	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	-1226.0	NM_001145897	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-52174615-1	chr1	52174115	52175115	+	673.0	f1_c57bl6.idr	intron (NM_001081081, intron 14 of 17)	Lx2|LINE|L1	54993.0	NM_001205313	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	1.5	0.0	1.5	1.5	0.0	0.5
Merged-chr17-24474358-2	chr17	24473858	24474858	+	673.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001252463, exon 9 of 9)	3' UTR (NM_001252463, exon 9 of 9)	474.0	NM_175682	319259.0	Mm.258355	NM_175682	ENSMUSG00000045744	Bricd5	9930021D14Rik	BRICHOS domain containing 5	protein-coding	4.0	0.0	0.0	1.5	0.0	0.0
Merged-chr2-157099644-3	chr2	157099126	157100126	+	673.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018851, intron 15 of 15)	intron (NM_018851, intron 15 of 15)	12571.0	NM_001177439	383766.0	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48320773-3	chr17	48320278	48321278	+	673.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177083, intron 3 of 5)	intron (NM_177083, intron 3 of 5)	4616.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-3338792-2	chr18	3338292	3339292	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033457, intron 1 of 1)	B1_Mur3|SINE|Alu	-1203.0	NM_001110852	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54630123-1	chr14	54629623	54630623	+	673.0	f1_balb.idr	TTS (NM_175204)	TTS (NM_175204)	4813.0	NM_175204	73902.0	Mm.32009	NM_175204	ENSMUSG00000072423	Psmb11	5830406J20Rik|beta5t	proteasome (prosome, macropain) subunit, beta type, 11	protein-coding	0.0	0.0	0.0	0.5	2.0	0.0
Merged-chr2-153694639-1	chr2	153694139	153695139	+	673.0	f1_balb.idr	Intergenic	Intergenic	45190.0	NM_001271747	13436.0	Mm.89772	NM_010068	ENSMUSG00000027478	Dnmt3b	MmuIIIB	DNA methyltransferase 3B	protein-coding	3.0	1.5	4.0	1.0	0.5	3.5
Merged-chr7-43464224-2	chr7	43463724	43464724	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290316, intron 2 of 9)	intron (NM_001290316, intron 2 of 9)	991.0	NM_001290316	75690.0	Mm.30200	NM_001290316	ENSMUSG00000070604	Vsig10l	-	V-set and immunoglobulin domain containing 10 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155777342-1	chr2	155776842	155777842	+	673.0	f1_balb.idr	intron (NM_010808, intron 1 of 8)	CR1_Mam|LINE|CR1	2000.0	NM_010808	17391.0	Mm.389325	NM_010808	ENSMUSG00000027612	Mmp24	AU040325|MMP-21|MT5-MMP|MT5MMP|MTMMP5	matrix metallopeptidase 24	protein-coding	9.0	1.0	2.5	0.0	0.0	0.0
Merged-chr1-97386357-3	chr1	97385853	97386853	+	673.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-258050.0	NM_028942	74441.0	Mm.60362	NM_028942	ENSMUSG00000026331	Slco6c1	4933404A18Rik|C79179	solute carrier organic anion transporter family, member 6c1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113770593-2	chr5	113770093	113771093	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151532, intron 1 of 16)	intron (NR_151532, intron 1 of 16)	1807.0	NR_151532	53890.0	Mm.29594	NM_016926	ENSMUSG00000018974	Sart3	AU045857|mKIAA0156	squamous cell carcinoma antigen recognized by T cells 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-40865915-2	chr11	40865415	40866415	+	673.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110629.0	NM_009831	12450.0	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	7.5	0.0	0.0	0.0	0.0	3.5
Merged-chr6-29534503-2	chr6	29534003	29535003	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252382, intron 3 of 8)	intron (NM_001252382, intron 3 of 8)	5221.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-125736413-2	chr2	125735913	125736913	+	673.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177608)	TTS (NM_177608)	-12265.0	NM_199022	271849.0	Mm.425101	NM_199022	ENSMUSG00000035109	Shc4	6230417E10Rik|9930029B02Rik|Gm685|RaLP	SHC (Src homology 2 domain containing) family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56182889-2	chr17	56182389	56183389	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080837, intron 1 of 5)	PB1|SINE|Alu	1031.0	NM_080837	28106.0	Mm.294870	NM_080837	ENSMUSG00000019579	Mydgf	D17Wsu104e|Il25|Ly6elg	myeloid derived growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-75197425-1	chr6	75196925	75197925	+	673.0	f1_balb.idr	Intergenic	RMER13A1|LTR|ERVK	-1726404.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	3.5	7.5	0.0	6.5	2.5	4.5
Merged-chr4-126104473-1	chr4	126103973	126104973	+	673.0	f0_balb.idr	intron (NM_028800, intron 1 of 10)	intron (NM_028800, intron 1 of 10)	516.0	NM_001145827	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	19.5	16.5	19.5	10.0	20.0	22.0
Merged-chr13-45393279-2	chr13	45392736	45393736	+	673.0	f0_balb.idr|f1_balb.idr	intron (NM_153789, intron 2 of 6)	intron (NM_153789, intron 2 of 6)	3494.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	12.5	23.0	12.0	11.0	5.0	3.5
Merged-chr13-37775934-1	chr13	37775434	37776434	+	673.0	f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-50104.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45521757-1	chr9	45521257	45522257	+	673.0	f1_balb.idr	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-90525.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	0.0	6.5	5.5	0.0	0.0	4.5
Merged-chr12-70148909-1	chr12	70148409	70149409	+	673.0	f1_balb.idr	Intergenic	Intergenic	-5262.0	NM_001195033	100504285.0	Mm.291105	NM_001195033	ENSMUSG00000090121	Abhd12b	Gm804	abhydrolase domain containing 12B	protein-coding	0.5	7.0	10.0	0.5	13.0	9.0
Merged-chr11-88252364-2	chr11	88251864	88252864	+	673.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41679.0	NM_028859	74297.0	Mm.207320	NM_028859	ENSMUSG00000034031	Ccdc182	1700106J16Rik	coiled-coil domain containing 182	protein-coding	0.0	1.0	2.5	4.0	0.0	1.0
Merged-chr8-113637067-1	chr8	113636567	113637567	+	673.0	f1_balb.idr	intron (NM_001048143, intron 2 of 5)	intron (NM_001048143, intron 2 of 5)	1268.0	NM_173015	270096.0	Mm.74689	NM_173015	ENSMUSG00000078908	Mon1b	5031407H10|5033413H12Rik	MON1 homolog B, secretory traffciking associated	protein-coding	3.0	4.5	1.5	0.0	16.5	4.5
Merged-chr2-73386011-1	chr2	73385511	73386511	+	673.0	f0_balb.idr	intron (NM_001276444, intron 1 of 15)	intron (NM_001276444, intron 1 of 15)	469.0	NM_001276443	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-75262544-1	chr4	75262044	75263044	+	673.0	f0_balb.idr	Intergenic	Intergenic	15748.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122549725-1	chr10	122549225	122550225	+	673.0	f1_balb.idr	Intergenic	L1_Rod|LINE|L1	20166.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	0.0	0.0	0.0	0.0	6.5	0.5
Merged-chr1-89451325-2	chr1	89450825	89451825	+	673.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3486.0	NM_178119	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116710002-2	chr4	116709502	116710502	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151452, intron 4 of 9)	intron (NR_151452, intron 4 of 9)	1407.0	NR_151451	68394.0	Mm.425201	NM_026714	ENSMUSG00000028689	Ccdc163	0610037D15Rik|4933430J04Rik	coiled-coil domain containing 163	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-86827390-1	chr8	86826890	86827890	+	673.0	f0_balb.idr	Intergenic	RMER19C|LTR|ERVK	57868.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	1.0	1.0	3.0	6.5	5.5	8.0
Merged-chr12-87399719-2	chr12	87399219	87400219	+	673.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-11364.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85530142-2	chr12	85529642	85530642	+	673.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56252.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-130795321-2	chr3	130794821	130795821	+	673.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64923.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111183557-2	chr8	111183057	111184057	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 8 of 25)	intron (NM_009149, intron 8 of 25)	-38059.0	NR_040364	434350.0	Mm.442061	NR_040363		9430091E24Rik	-	RIKEN cDNA 9430091E24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100638487-1	chr15	100637987	100638987	+	673.0	f0_balb.idr	Intergenic	Intergenic	-1547.0	NM_001033872	207818.0	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-68709466-2	chr7	68708966	68709966	+	673.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39772.0	NM_001042592	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143821374-2	chr7	143820874	143821874	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030221, intron 1 of 20)	intron (NM_030221, intron 1 of 20)	1478.0	NM_001308095	78914.0	Mm.35104	NM_030221	ENSMUSG00000031090	Nadsyn1	9130012B15Rik	NAD synthetase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6629371-2	chr11	6628871	6629871	+	673.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-3304.0	NM_134011	21379.0	Mm.247761	NM_134011	ENSMUSG00000000384	Tbrg4	2310042P22Rik|AA120735|AA408001|AI527316|Cpr2|R74877|Tb-12|mKIAA0948	transforming growth factor beta regulated gene 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86760479-2	chr11	86759979	86760979	+	673.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2912.0	NM_001356393	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-39053165-1	chr16	39052665	39053665	+	673.0	f0_balb.idr	Intergenic	Intergenic	135785.0	NR_153800	102640746.0		NR_153800		Gm36742	-	predicted gene, 36742	ncRNA	0.0	5.5	3.0	18.0	5.0	3.5
Merged-chr6-124640242-2	chr6	124639742	124640742	+	673.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4157.0	NM_173864	317677.0	Mm.483270	NM_173864	ENSMUSG00000079343	C1s2	C1sb|EG317677|Gm5077	complement component 1, s subcomponent 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79691749-2	chr15	79691249	79692249	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013818, intron 1 of 11)	RSINE1|SINE|B4	853.0	NM_013818	14904.0	Mm.19080	NM_013818	ENSMUSG00000042535	Gtpbp1	AL022987|AW045683|C85212|GP-1|Gtpbp	GTP binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr17-91460885-2	chr17	91460385	91461385	+	673.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-368083.0	NM_020252	18189.0	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91411967-2	chr16	91411467	91412467	+	673.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008349, exon 3 of 7)	exon (NM_008349, exon 3 of 7)	5732.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83157420-3	chr15	83156881	83157881	+	673.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029787, intron 8 of 8)	intron (NM_029787, intron 8 of 8)	7736.0	NR_004432	104307.0	Mm.471434	NR_004432	ENSMUSG00000065176	Rnu12	-	RNA U12, small nuclear	snRNA	0.0	0.5	1.0	0.0	0.0	1.0
Merged-chr11-86117682-3	chr11	86117188	86118188	+	673.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178309, intron 14 of 19)	intron (NM_178309, intron 14 of 19)	83505.0	NM_178309	237911.0	Mm.186143	NM_178309	ENSMUSG00000034329	Brip1	3110009N10Rik|8030460J03Rik|Bach1|FACJ|Fancj|OF	BRCA1 interacting protein C-terminal helicase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55472806-2	chr12	55472306	55473306	+	673.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	19841.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-37967848-2	chr18	37967348	37968348	+	673.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175684, exon 5 of 20)	exon (NM_175684, exon 5 of 20)	1883.0	NM_175684	319262.0	Mm.285060	NM_175684	ENSMUSG00000038524	Fchsd1	A030002D08Rik	FCH and double SH3 domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133843051-2	chr4	133842551	133843551	+	673.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31680.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	3.5	5.5	2.5	3.5	0.5	2.0
Merged-chr2-150843034-2	chr2	150842534	150843534	+	673.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356550)	promoter-TSS (NM_001356550)	-464.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79689723-1	chr15	79689223	79690223	+	673.0	f1_balb.idr	Intergenic	Intergenic	-1173.0	NM_013818	14904.0	Mm.19080	NM_013818	ENSMUSG00000042535	Gtpbp1	AL022987|AW045683|C85212|GP-1|Gtpbp	GTP binding protein 1	protein-coding	3.0	0.0	1.0	14.5	3.0	1.0
Merged-chr1-78656607-2	chr1	78656107	78657107	+	673.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1218.0	NM_001136222	74205.0	Mm.276016	NM_028817	ENSMUSG00000032883	Acsl3	2610510B12Rik|Acs3|C85929|Facl3|Pro2194	acyl-CoA synthetase long-chain family member 3	protein-coding	0.5	0.0	2.0	0.5	0.0	0.5
Merged-chr2-155946351-2	chr2	155945851	155946851	+	673.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008109)	promoter-TSS (NM_008109)	-984.0	NM_008109	14563.0	Mm.4744	NM_008109	ENSMUSG00000038259	Gdf5	BMP-14|Cdmp-1|bp|brp	growth differentiation factor 5	protein-coding	0.5	1.5	1.0	0.0	4.5	7.5
Merged-chr19-53870086-1	chr19	53869586	53870586	+	673.0	f0_balb.idr	Intergenic	Intergenic	-22145.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	6.5	0.0	0.5	1.0	1.0	2.0
Merged-chr13-80899892-4	chr13	80899388	80900388	+	673.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13793.0	NR_153411	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191575055-1	chr1	191574555	191575555	+	673.0	f0_balb.idr	promoter-TSS (NM_001306203)	promoter-TSS (NM_001306203)	489.0	NM_029766	76843.0	Mm.189102	NM_029766	ENSMUSG00000037474	Dtl	2810047L02Rik|5730564G15Rik|L2dtl|Ramp	denticleless E3 ubiquitin protein ligase	protein-coding	3.5	23.5	27.5	0.0	28.0	11.0
Merged-chr1-39961438-2	chr1	39960938	39961938	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 2 of 29)	(T)n|Simple_repeat|Simple_repeat	60525.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120820589-2	chr8	120820089	120821089	+	673.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81950.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4529512-2	chr7	4529012	4530012	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033548, intron 4 of 11)	intron (NM_001033548, intron 4 of 11)	2930.0	NM_001033548	436022.0	Mm.425359	NM_001033548	ENSMUSG00000055809	Dnaaf3	6030429G01Rik|b2b1739Clo	dynein, axonemal assembly factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20833787-2	chr14	20833287	20834287	+	673.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR40|LTR|ERVK	-2875.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	0.0	11.5	1.5	6.0	1.0	8.0
Merged-chr9-37236848-1	chr9	37236348	37237348	+	673.0	f0_balb.idr	intron (NM_001145960, intron 10 of 18)	intron (NM_001145960, intron 10 of 18)	18890.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-36040317-2	chr4	36039817	36040817	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166000, intron 7 of 8)	intron (NM_001166000, intron 7 of 8)	-195113.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	0.0	2.5	0.0	0.0	1.5	2.0
Merged-chr11-48808433-3	chr11	48807939	48808939	+	673.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145377, intron 4 of 5)	intron (NM_145377, intron 4 of 5)	5300.0	NR_028564	100216540.0		NR_028564	ENSMUSG00000064780	Snord95	-	small nucleolar RNA, C/D box 95	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6388671-3	chr15	6388109	6389109	+	672.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	1861.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121458262-5	chr10	121457742	121458742	+	672.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	18008.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	46.5	73.5	37.0	77.0	157.5	157.5
Merged-chr17-23841428-2	chr17	23840942	23841942	+	672.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027644, intron 5 of 6)	intron (NM_027644, intron 5 of 6)	2714.0	NM_027644	71003.0	Mm.328839	NM_027644	ENSMUSG00000024114	Prss41	4931440B09Rik|Tessp-1|Tessp1	protease, serine 41	protein-coding	0.0	1.5	0.0	0.0	3.5	7.5
Merged-chr10-7232254-2	chr10	7231754	7232754	+	672.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-20017.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr14-62374201-2	chr14	62373699	62374699	+	672.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42131.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	19.0	3.0	3.5	4.5	2.0	2.0
Merged-chr3-84946619-2	chr3	84946119	84947119	+	672.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177774, intron 3 of 12)	intron (NM_001177774, intron 3 of 12)	-5592.0	NM_080428	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	2.5	3.0	3.5	7.5	6.0	7.5
Merged-chr3-133090452-2	chr3	133089952	133090952	+	672.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356309, intron 1 of 11)	intron (NM_001356309, intron 1 of 11)	1373.0	NM_026231	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-46145851-3	chr14	46145351	46146351	+	672.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61824.0	NR_002875	218963.0	Mm.282093	NR_002875		Gm1821	-	ubiquitin pseudogene	pseudo	2.0	2.5	0.5	6.5	6.5	24.5
Merged-chr9-99087961-2	chr9	99087461	99088461	+	672.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 8 of 23)	B3|SINE|B2	52250.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147866360-4	chr5	147865899	147866899	+	672.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025624, intron 2 of 5)	ORR1A2-int|LTR|ERVL-MaLR	5771.0	NM_025624	66537.0	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25884984-2	chr15	25884484	25885484	+	672.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 1 of 8)	B4A|SINE|B4	41686.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-52454259-2	chr16	52453759	52454759	+	672.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1178.0	NM_001331110	11658.0	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54468015-2	chr14	54467515	54468515	+	672.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_022993, exon 5 of 7)	exon (NM_022993, exon 5 of 7)	3868.0	NM_022993	65107.0	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	0.0	2.0	0.0	0.0	0.0	0.0
Merged-chr17-5610143-3	chr17	5609630	5610630	+	672.700012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	ORR1D2|LTR|ERVL-MaLR	117530.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118925452-1	chr14	118924952	118925952	+	672.666687	f0_balb.idr	promoter-TSS (NM_025943)	promoter-TSS (NM_025943)	18.0	NM_025943	66573.0	Mm.87456	NM_025943	ENSMUSG00000042156	Dzip1	2510025K24Rik|2810422M04Rik	DAZ interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41380789-5	chr19	41380241	41381241	+	672.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 1 of 16)	L1MC4|LINE|L1	4329.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	26.0	94.0	71.0	37.0	150.0	98.0
Merged-chr17-84285203-3	chr17	84284704	84285704	+	672.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 29 of 37)	intron (NM_183021, intron 29 of 37)	-97257.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78828507-3	chr11	78828012	78829012	+	672.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001076681, intron 1 of 3)	ID_B1|SINE|B4	1917.0	NM_001076681	66274.0	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-187226254-2	chr1	187225754	187226754	+	672.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357646, intron 2 of 7)	(TCC)n|Simple_repeat|Simple_repeat	10511.0	NM_001357645	67769.0	Mm.138321	NM_026367	ENSMUSG00000039210	Gpatch2	5830433G22Rik|5830436K05Rik|AI427714|AI447508|AW107440|AW491060|Gpatc2	G patch domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84723635-2	chr8	84723135	84724135	+	672.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001297601, intron 6 of 8)	intron (NM_001297601, intron 6 of 8)	22178.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	6.5	0.0	2.5	3.0	5.0	1.0
Merged-chr17-5496908-2	chr17	5496408	5497408	+	672.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	MTD|LTR|ERVL-MaLR	4308.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-16155386-3	chr2	16154846	16155846	+	672.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310455, intron 35 of 38)	L1MC4|LINE|L1	-200958.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76642424-3	chr11	76641924	76642924	+	672.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-30046.0	NM_177182	320522.0	Mm.131585	NM_177182	ENSMUSG00000044243	Bhlha9	A830053O21Rik|Fingerin	basic helix-loop-helix family, member a9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-51741816-2	chr12	51741316	51742316	+	672.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49902.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-21068659-3	chr1	21068166	21069166	+	672.599976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177409, intron 1 of 10)	intron (NM_177409, intron 1 of 10)	10559.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	2.0	16.0	6.0	1.0	2.5	0.5
Merged-chr3-87816755-3	chr3	87816259	87817259	+	672.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011832)	TTS (NM_011832)	19808.0	NM_011832	23920.0	Mm.42041	NM_011832	ENSMUSG00000005640	Insrr	Irr	insulin receptor-related receptor	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr3-41452239-3	chr3	41451727	41452727	+	672.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR37B|LTR|ERV1	40972.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-125455852-2	chr1	125455352	125456352	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TA)n|Simple_repeat|Simple_repeat	-20125.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr9-13829233-2	chr9	13828733	13829733	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176836, intron 2 of 9)	intron (NM_176836, intron 2 of 9)	1517.0	NM_176836	72826.0	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149813526-2	chr4	149813026	149814026	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39259.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-107490199-2	chr8	107489699	107490699	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025830, intron 6 of 23)	intron (NM_025830, intron 6 of 23)	53801.0	NM_025830	66894.0	Mm.390058	NM_025830	ENSMUSG00000031930	Wwp2	1300010O06Rik|AA690238|AIP2|AW554328	WW domain containing E3 ubiquitin protein ligase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77764540-2	chr15	77764040	77765040	+	672.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_022410, exon 36 of 41)	exon (NM_022410, exon 36 of 41)	-7530.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.0	1.0	0.5	0.0	2.0	0.0
Merged-chr2-93954300-2	chr2	93953800	93954800	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2800.0	NM_001145034	620695.0	Mm.482106	NM_001145034	ENSMUSG00000087006	Gm13889	Ag2	predicted gene 13889	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-15967353-2	chr14	15966853	15967853	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	275978.0	NM_001359883	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110445139-2	chr12	110444639	110445639	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2040.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29516561-2	chr17	29516061	29517061	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25516.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.0	5.5	1.5	0.0	3.0	0.0
Merged-chr1-44044844-2	chr1	44044344	44045344	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TGAG)n|Simple_repeat|Simple_repeat	-24838.0	NM_001013799	433294.0	Mm.123621	NM_001013799	ENSMUSG00000047343	Mettl21c	A530098C11Rik	methyltransferase like 21C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21147882-2	chr9	21147382	21148382	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016742, intron 1 of 7)	ID_B1|SINE|B4	2024.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-74214745-2	chr18	74214245	74215245	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1467.0	NM_028868	74322.0	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	13.5	17.5	12.0	12.5	22.5	15.0
Merged-chr11-121787439-2	chr11	121786939	121787939	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42779.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30609445-2	chr2	30608945	30609945	+	672.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_030137)	TTS (NM_030137)	14401.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121707724-2	chr11	121707224	121708224	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144797, intron 1 of 3)	intron (NM_144797, intron 1 of 3)	5297.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119366645-2	chr13	119366145	119367145	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308506, intron 11 of 16)	L1MEb|LINE|L1	42366.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136825537-2	chr6	136825037	136826037	+	672.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_021714, exon 3 of 12)	exon (NM_021714, exon 3 of 12)	2679.0	NM_021714	60321.0	Mm.141197	NM_021714	ENSMUSG00000030216	Wbp11	2510026P17Rik|D6Wsu113e|Npwbp|SIPP1	WW domain binding protein 11	protein-coding	8.5	8.0	26.0	9.0	13.5	7.0
Merged-chr1-153897848-2	chr1	153897348	153898348	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2078.0	NR_106194	102466257.0		NR_106194	ENSMUSG00000099227	Mir8114	Gm27382|mmu-mir-8114	microRNA 8114	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31033927-2	chr2	31033427	31034427	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 14 of 15)	intron (NM_001355105, intron 14 of 15)	51648.0	NM_028846	74270.0	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-32884393-2	chr15	32883893	32884893	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36330.0	NM_008304	15529.0	Mm.234266	NM_008304	ENSMUSG00000022261	Sdc2	4833414L08Rik|AA960457|Hspg1|Synd2|syndecan-2	syndecan 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47436288-1	chr19	47435788	47436788	+	672.5	f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	28123.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	4.0	12.5	19.5	1.5	0.5	3.0
Merged-chr9-123812362-2	chr9	123811862	123812862	+	672.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_030712)	TTS (NM_030712)	5885.0	NM_030712	80901.0	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-68383859-2	chr2	68383359	68384359	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 5 of 17)	intron (NM_016866, intron 5 of 17)	88122.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3833487-2	chr4	3832987	3833987	+	672.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026147, exon 4 of 4)	3' UTR (NM_026147, exon 4 of 4)	2168.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	1.5	2.0	1.5	0.0	0.0	2.5
Merged-chr8-77154568-2	chr8	77154068	77155068	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083906, intron 3 of 8)	intron (NM_001083906, intron 3 of 8)	252060.0	NM_001083906	110784.0	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75452318-2	chr11	75451818	75452818	+	672.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_138950, exon 1 of 10)	exon (NM_138950, exon 1 of 10)	2399.0	NM_138950	192652.0	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113390239-2	chr13	113389739	113390739	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112605.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71663458-2	chr17	71662958	71663958	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-9803.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10487612-2	chr16	10487112	10488112	+	672.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007575)	promoter-TSS (NM_007575)	-566.0	NM_007575	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5702312-2	chr19	5701812	5702812	+	672.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_022012, exon 12 of 12)	exon (NM_022012, exon 12 of 12)	-2159.0	NM_010609	16530.0	Mm.440033	NM_010609	ENSMUSG00000024936	Kcnk7	2310014G03Rik|Kcnk6|Kcnk8|Knot|Mlk3	potassium channel, subfamily K, member 7	protein-coding	1.0	0.0	0.0	3.0	0.0	0.0
Merged-chr4-32153614-2	chr4	32153120	32154120	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	189513.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	5.0	1.0	3.5	2.0	1.0	3.5
Merged-chr15-62060829-2	chr15	62060329	62061329	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	21572.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120667264-2	chr8	120666764	120667764	+	672.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009941)	promoter-TSS (NM_009941)	848.0	NM_010926	18117.0	Mm.2136	NM_010926	ENSMUSG00000031819	Emc8	Cox4nb|Fam158b|Noc4	ER membrane protein complex subunit 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12445657-2	chr19	12445157	12446157	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-15122.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	57.0	118.0	70.0	55.0	153.5	103.0
Merged-chr2-166522040-2	chr2	166521540	166522540	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42482.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-157613596-2	chr3	157613096	157614096	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011196, intron 2 of 2)	(A)n|Simple_repeat|Simple_repeat	46704.0	NM_011196	19218.0	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128516853-2	chr10	128516353	128517353	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011843, intron 18 of 30)	intron (NM_011843, intron 18 of 30)	-4823.0	NR_105881	102465552.0		NR_105881	ENSMUSG00000099292	Mir6916	Gm27721|mmu-mir-6916	microRNA 6916	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-72333285-2	chr18	72332785	72333785	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007831, intron 1 of 28)	intron (NM_007831, intron 1 of 28)	17784.0	NM_007831	13176.0	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-141115464-2	chr5	141114964	141115964	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-114868.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39525139-2	chr1	39524639	39525639	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-10562.0	NM_028043	52846.0	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64123264-2	chr1	64122764	64123764	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1875.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117123551-2	chr2	117123051	117124051	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277256, intron 1 of 4)	intron (NM_001277256, intron 1 of 4)	2480.0	NM_033524	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3054628-2	chr4	3054167	3055167	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117416.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	3.5	0.0	0.0	0.0	7.0	3.0
Merged-chr11-68549293-2	chr11	68548793	68549793	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004435, intron 18 of 19)	intron (NM_001004435, intron 18 of 19)	-6893.0	NM_146004	215723.0	Mm.131205	NM_146004	ENSMUSG00000048329	Mfsd6l	-	major facilitator superfamily domain containing 6-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127590872-2	chr7	127590372	127591372	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360883, intron 4 of 18)	intron (NM_001360883, intron 4 of 18)	1947.0	NM_001360883	233900.0	Mm.41122	NM_172281	ENSMUSG00000030816	Rnf40	AI848422|BRE1-B|mKIAA0661	ring finger protein 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83294017-2	chr15	83293517	83294517	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42243.0	NM_001004150	239559.0	Mm.323805	NM_001004150	ENSMUSG00000047878	A4galt	-	alpha 1,4-galactosyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120510046-2	chr1	120509546	120510546	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR12|LTR|ERV1	-5022.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	7.5	4.5	1.5	0.0	0.0	1.5
Merged-chr8-11637391-2	chr8	11636891	11637891	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1634.0	NM_001281974	102334.0	Mm.12459	NM_133971	ENSMUSG00000031508	Ankrd10	4833425P12Rik|AW549277	ankyrin repeat domain 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19860607-2	chr7	19860107	19861107	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033419, intron 1 of 5)	B1_Mur3|SINE|Alu	692.0	NM_001033419	330483.0	Mm.260192	NM_001033419	ENSMUSG00000014686	Ceacam16	Gm769	carcinoembryonic antigen-related cell adhesion molecule 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111296559-2	chr12	111296059	111297059	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183016, intron 30 of 36)	intron (NM_183016, intron 30 of 36)	25463.0	NM_033603	93835.0	Mm.197639	NM_033603	ENSMUSG00000021278	Amn	-	amnionless	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88218664-2	chr1	88218164	88219164	+	672.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_201641, exon 5 of 5)	3' UTR (NM_201641, exon 5 of 5)	6705.0	NM_201645	394436.0	Mm.300095	NM_201645	ENSMUSG00000089960	Ugt1a1	Gnt1|UDPGT 1-1|UGT1A01|Udpgt-1a|UgtBr1	UDP glucuronosyltransferase 1 family, polypeptide A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117836015-2	chr10	117835515	117836515	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	9959.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6238482-2	chr2	6237982	6238982	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 1 of 6)	intron (NR_040333, intron 1 of 6)	-25488.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	0.0	0.0	8.0	0.0	0.0	1.5
Merged-chr3-127446372-1	chr3	127445872	127446872	+	672.5	f1_balb.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	-37314.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	5.0	16.0	2.0	11.5	0.0	3.0
Merged-chr3-81033074-2	chr3	81032574	81033574	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3342.0	NM_019971	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9669812-2	chr4	9669317	9670317	+	672.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023066)	promoter-TSS (NM_023066)	-473.0	NM_001290367	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	15.5	67.5	37.5	15.5	30.0	5.5
Merged-chr17-47773698-2	chr17	47773198	47774198	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-12046.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.5	2.0	1.5	0.0	0.0	1.5
Merged-chr12-100028115-2	chr12	100027615	100028615	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	Lx5b|LINE|L1	63616.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-35087890-3	chr13	35087394	35088394	+	672.477783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79910.0	NR_153831	75197.0	Mm.234091	NR_153831	ENSMUSG00000113906	4930529N20Rik	-	RIKEN cDNA 4930529N20 gene	ncRNA	0.0	0.5	5.5	0.0	1.5	3.5
Merged-chr5-65846782-3	chr5	65846279	65847279	+	672.472229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16790.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36710407-3	chr5	36709847	36710847	+	672.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14326.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	4.0	12.5	7.0	1.0	7.0	13.0
Merged-chr18-23872106-2	chr18	23871606	23872606	+	672.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	68136.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110910115-2	chr5	110909615	110910615	+	672.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 2 of 22)	MERVL_2A-int|LTR|ERVL	30312.0	NM_001267622	209683.0	Mm.295660	NM_024477	ENSMUSG00000033209	Ttc28	2310015L07Rik|6030435N04|AI428795|AI851761|BC002262|TPRBK	tetratricopeptide repeat domain 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91064826-3	chr16	91064323	91065323	+	672.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028905, intron 1 of 2)	intron (NM_028905, intron 1 of 2)	4322.0	NM_001163695	74387.0	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51727935-1	chr3	51727435	51728435	+	672.333313	f0_balb.idr	intron (NM_001004176, intron 2 of 4)	L3b|LINE|CR1	66756.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88047560-3	chr7	88047065	88048065	+	672.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081414, intron 8 of 9)	intron (NM_001081414, intron 8 of 9)	-230520.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-77020486-3	chr16	77019933	77020933	+	672.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 1 of 23)	intron (NM_013918, intron 1 of 23)	6364.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100023077-3	chr15	100022570	100023570	+	672.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR4_MM-int|LTR|ERV1	-15594.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-154788283-3	chr1	154787792	154788792	+	672.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62372.0	NM_009782	12290.0	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-79347436-4	chr17	79346950	79347950	+	672.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026514, intron 1 of 1)	intron (NM_026514, intron 1 of 1)	7641.0	NM_026514	260409.0	Mm.140601	NM_026514	ENSMUSG00000036533	Cdc42ep3	3200001F04Rik|AA986861|Borg2|Cep3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding	6.0	1.0	4.0	0.5	4.0	3.5
Merged-chr2-3511661-2	chr2	3511161	3512161	+	672.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_149715, intron 1 of 4)	intron (NR_149715, intron 1 of 4)	1153.0	NR_103465	50497.0	Mm.89341	NM_015765	ENSMUSG00000051396	Hspa14	70kDa|HSP70L1|Hsp70-4|NST-1|hsr.1	heat shock protein 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-169932030-2	chr2	169931539	169932539	+	672.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31148.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	1.0	12.5	9.0	0.0	0.0	0.0
Merged-chr8-70694816-2	chr8	70694324	70695324	+	672.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2915.0	NM_010592	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	56.0	22.5	22.5	30.0	33.0	18.0
Merged-chr12-52513480-2	chr12	52512980	52513980	+	672.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	-2597.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-37338979-2	chr2	37338479	37339479	+	672.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7230.0	NM_146374	258371.0	Mm.223061	NM_146374	ENSMUSG00000049018	Olfr368	MOR178-1	olfactory receptor 368	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25121796-2	chr7	25121296	25122296	+	672.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163556, intron 1 of 13)	intron (NM_001163556, intron 1 of 13)	10664.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94351272-2	chr11	94350772	94351772	+	672.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 28 of 30)	intron (NM_029600, intron 28 of 30)	23271.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-33247324-3	chr14	33246828	33247828	+	672.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	30505.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-31808181-3	chr13	31807678	31808678	+	672.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008592, exon 1 of 1)	exon (NM_008592, exon 1 of 1)	1532.0	NM_008592	17300.0	Mm.12949	NM_008592	ENSMUSG00000050295	Foxc1	FREAC3|Fkh1|Mf1|Mf4|ch|fkh-1|frkhda	forkhead box C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55825548-2	chr14	55825048	55826048	+	672.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168346, intron 1 of 8)	CpG	753.0	NM_023699	73181.0	Mm.27908	NM_023699	ENSMUSG00000023411	Nfatc4	3110041H08Rik|AW107667|AW546455|Nfat3	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114877032-2	chr6	114876532	114877532	+	672.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 3 of 5)	intron (NM_001356371, intron 3 of 5)	44789.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93403656-2	chr1	93403156	93404156	+	672.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001271884, exon 24 of 24)	3' UTR (NM_001271884, exon 24 of 24)	29760.0	NM_001271884	404545.0	Mm.297411	NM_207031	ENSMUSG00000034107	Ano7	Ngep|Ngep-L|Pcanap5|Tmem16g	anoctamin 7	protein-coding	0.0	0.0	2.0	2.0	2.5	0.5
Merged-chr8-4173144-2	chr8	4172626	4173626	+	672.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346730, intron 1 of 19)	MTD|LTR|ERVL-MaLR	6559.0	NM_001346730	213027.0	Mm.437106	NM_153536	ENSMUSG00000011832	Evi5l	1700084G18Rik|2310039H16Rik|3110007G05Rik|B130050I23Rik	ecotropic viral integration site 5 like	protein-coding	2.0	0.0	0.0	1.0	5.5	1.5
Merged-chr10-120129175-2	chr10	120128675	120129675	+	672.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16210.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34811830-3	chr7	34811309	34812309	+	672.033325	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175140, intron 1 of 3)	CpG	902.0	NM_175140	68947.0	Mm.29380	NM_175140	ENSMUSG00000060402	Chst8	1500011J21Rik|AI426009	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	protein-coding	0.0	2.0	1.0	0.0	0.0	0.0
Merged-chr19-27429334-1	chr19	27428834	27429834	+	672.0	f0_balb.idr	promoter-TSS (NR_027987)	promoter-TSS (NR_027987)	574.0	NM_177474	52874.0	Mm.261027	NM_177474	ENSMUSG00000041360	Pum3	1110069H02Rik|AA675048|D19Bwg1357e	pumilio RNA-binding family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-141054594-2	chr5	141054094	141055094	+	672.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53998.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-32536666-2	chr6	32536166	32537166	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 1 of 31)	intron (NM_175750, intron 1 of 31)	25525.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65511882-1	chr3	65511382	65512382	+	672.0	f1_c57bl6.idr	Intergenic	Intergenic	-16565.0	NM_178892	99929.0	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding	0.0	0.0	1.0	0.0	0.0	9.5
Merged-chr6-129625654-1	chr6	129625154	129626154	+	672.0	f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-1790.0	NM_001286018	27007.0	Mm.8217	NM_033078	ENSMUSG00000030149	Klrk1	D6H12S2489E|NKG2-D|Nkg2d	killer cell lectin-like receptor subfamily K, member 1	protein-coding	38.0	76.5	84.0	58.0	47.0	101.5
Merged-chr10-44292419-2	chr10	44291919	44292919	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001314013, intron 3 of 6)	intron (NM_001314013, intron 3 of 6)	24080.0	NM_001358596	11793.0	Mm.22264	NM_053069	ENSMUSG00000038160	Atg5	2010107M05Rik|3110067M24Rik|AW319544|Apg5l|Atg5l|C88337|Paddy	autophagy related 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83746177-1	chr8	83745677	83746677	+	672.0	f1_balb.idr	Intergenic	B4A|SINE|B4	-4866.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	16.0	8.5	22.0	20.5	26.5	15.5
Merged-chr8-95340860-2	chr8	95340360	95341360	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133954, intron 3 of 6)	intron (NM_133954, intron 3 of 6)	8576.0	NM_133954	101985.0	Mm.29069	NM_133954	ENSMUSG00000031792	Usb1	AA960436	U6 snRNA biogenesis 1	protein-coding	0.0	0.0	2.0	1.0	7.5	1.5
Merged-chr11-45696763-2	chr11	45696263	45697263	+	672.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-111320.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-52300700-1	chr12	52300200	52301200	+	672.0	f1_balb.idr	intron (NM_029760, intron 8 of 10)	intron (NM_029760, intron 8 of 10)	179909.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	0.0	3.5	0.0	0.0	0.0	0.0
Merged-chr4-34613893-3	chr4	34613415	34614415	+	672.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159563, intron 1 of 19)	intron (NM_001159563, intron 1 of 19)	1027.0	NM_001159563	50793.0	Mm.399624	NM_015824	ENSMUSG00000040044	Orc3	Orc3l	origin recognition complex, subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41552741-2	chr4	41552241	41553241	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027993, intron 1 of 5)	MIRb|SINE|MIR	16786.0	NM_001159583	71901.0	Mm.39215	NM_027993	ENSMUSG00000028439	Fam219a	2310028H24Rik	family with sequence similarity 219, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55794906-2	chr14	55794406	55795406	+	672.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-6049.0	NM_001164108	56532.0	Mm.46612	NM_019955	ENSMUSG00000022221	Ripk3	2610528K09Rik|AW107945|Rip3	receptor-interacting serine-threonine kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71349745-2	chr8	71349245	71350245	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 22 of 39)	intron (NM_001142322, intron 22 of 39)	-17103.0	NM_001145780	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	2.0	0.0	9.0	0.0	0.0	0.5
Merged-chr10-80802789-2	chr10	80802289	80803289	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013651, intron 4 of 8)	intron (NM_013651, intron 4 of 8)	-2459.0	NM_007445	11705.0	Mm.376094	NM_007445	ENSMUSG00000035262	Amh	MIS	anti-Mullerian hormone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76747568-2	chr15	76747068	76748068	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 3 of 10)	intron (NM_198420, intron 3 of 10)	-23723.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	2.5	19.5	15.5	3.0	25.0	27.0
Merged-chr2-20073167-2	chr2	20072667	20073667	+	672.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-216746.0	NM_001081006	208618.0	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53340818-2	chr18	53340318	53341318	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 3 of 6)	intron (NM_029394, intron 3 of 6)	77189.0	NM_008908	19038.0	Mm.4587	NM_008908	ENSMUSG00000024538	Ppic	CyP-20c	peptidylprolyl isomerase C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84774701-2	chr12	84774201	84775201	+	672.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028863, exon 4 of 4)	exon (NM_028863, exon 4 of 4)	1431.0	NM_028863	74316.0	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4871678-3	chr12	4871171	4872171	+	672.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033488, intron 1 of 13)	intron (NM_001033488, intron 1 of 13)	2688.0	NM_001033488	432628.0	Mm.154078	NM_001033488	ENSMUSG00000037336	Mfsd2b	Gm1964	major facilitator superfamily domain containing 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-100497283-1	chr9	100496783	100497783	+	672.0	f0_balb.idr	exon (NM_001324530, exon 2 of 3)	exon (NM_001324530, exon 2 of 3)	9573.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-30585249-1	chr12	30584749	30585749	+	672.0	f1_balb.idr	intron (NM_172049, intron 1 of 4)	intron (NM_172049, intron 1 of 4)	806.0	NM_172049	211986.0	Mm.34035	NM_172049	ENSMUSG00000043061	Tmem18	BC024093	transmembrane protein 18	protein-coding	4.0	5.5	6.0	2.0	8.5	1.5
Merged-chr17-63909539-2	chr17	63909039	63910039	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 3 of 18)	B3|SINE|B2	-28433.0	NM_008000	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21424334-2	chr5	21423834	21424834	+	672.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177869)	promoter-TSS (NM_177869)	343.0	NM_029195	75172.0	Mm.426695	NM_029195	ENSMUSG00000064280	Ccdc146	4930528G09Rik|mKIAA1505	coiled-coil domain containing 146	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128458140-2	chr7	128457640	128458640	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347640, intron 1 of 11)	intron (NM_001347640, intron 1 of 11)	3373.0	NM_009383	21843.0	Mm.242072	NM_009383	ENSMUSG00000030846	Tial1	5330433G13Rik|AL033329|TIAR|mTIAR	Tia1 cytotoxic granule-associated RNA binding protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94676047-2	chr11	94675547	94676547	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145828, intron 1 of 10)	intron (NM_145828, intron 1 of 10)	1446.0	NM_145828	217119.0	Mm.100638	NM_145828	ENSMUSG00000020868	Xylt2	E030002B02Rik|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-69214410-2	chr10	69213910	69214910	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252638, intron 1 of 11)	intron (NM_001252638, intron 1 of 11)	1216.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139250451-1	chr5	139249951	139250951	+	672.0	f1_balb.idr	TTS (NM_024451)	TTS (NM_024451)	-1873.0	NM_001359238	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70723719-2	chr8	70723219	70724219	+	672.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310465)	promoter-TSS (NM_001310465)	-345.0	NM_001310465	110385.0	Mm.255180	NM_201607	ENSMUSG00000031842	Pde4c	Dpde1|E130301F19Rik|dunce	phosphodiesterase 4C, cAMP specific	protein-coding	0.0	2.5	1.0	0.0	0.0	0.0
Merged-chr14-120367112-1	chr14	120366612	120367612	+	672.0	f0_balb.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	60660.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118643810-2	chr9	118643310	118644310	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	(CA)n|Simple_repeat|Simple_repeat	37101.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-109881863-2	chr7	109881363	109882363	+	672.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-16184.0	NM_020052	56788.0	Mm.40447	NM_020052	ENSMUSG00000007279	Scube2	4932442O19Rik|Cegf1|Cegp1	signal peptide, CUB domain, EGF-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112324296-1	chr5	112323796	112324796	+	672.0	f1_balb.idr	Intergenic	Intergenic	-2073.0	NM_018783	54723.0	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	42.5	157.5	101.0	59.5	255.5	160.5
Merged-chr18-32833118-3	chr18	32832584	32833584	+	672.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045381, exon 2 of 5)	non-coding (NR_045381, exon 2 of 5)	-4141.0	NM_001110016	225348.0	Mm.38816	NM_144863	ENSMUSG00000038299	Wdr36	5730444A13Rik|Ta-wdrp	WD repeat domain 36	protein-coding	9.5	19.0	44.5	19.0	43.0	60.0
Merged-chr10-14054831-2	chr10	14054331	14055331	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	88452.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	4.5	16.5	10.5	9.5	13.5	7.5
Merged-chr8-13295324-2	chr8	13294824	13295824	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172282, intron 4 of 12)	intron (NM_172282, intron 4 of 12)	-7198.0	NM_001042650	102323.0	Mm.368890	NM_001024504	ENSMUSG00000038506	Dcun1d2	AW495713|mFLJ10704	DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128135326-2	chr7	128134826	128135826	+	672.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_021334, exon 10 of 30)	exon (NM_021334, exon 10 of 30)	5758.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66894248-3	chr9	66893752	66894752	+	672.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	25453.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100639962-1	chr12	100639462	100640462	+	672.0	f0_balb.idr	intron (NM_153587, intron 3 of 17)	intron (NM_153587, intron 3 of 17)	85158.0	NM_001330702	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35044964-2	chr7	35044464	35045464	+	672.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008820)	TTS (NM_008820)	11602.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-137311021-2	chr7	137310521	137311521	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113415, intron 4 of 15)	intron (NM_001113415, intron 4 of 15)	3424.0	NM_001113415	13593.0	Mm.258708	NM_010096	ENSMUSG00000010476	Ebf3	3110018A08Rik|O/E-2|mKIAA4201	early B cell factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152816449-1	chr2	152815949	152816949	+	672.0	f0_balb.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	12040.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173223665-2	chr2	173223165	173224165	+	672.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_022995)	TTS (NM_022995)	-4743.0	NM_001139519	58203.0	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27437727-2	chr7	27437212	27438212	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_032610, intron 2 of 35)	B3|SINE|B2	8877.0	NM_032610	80297.0	Mm.459123	NM_032610	ENSMUSG00000011751	Sptbn4	1700022P15Rik|5830426A08Rik|ROSA62|SpbIV|Spnb4|dyn|lnd|nmf261|nmf379|qv	spectrin beta, non-erythrocytic 4	protein-coding	2.0	0.5	1.5	13.0	1.5	3.5
Merged-chr3-75026023-2	chr3	75025523	75026523	+	672.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	117749.0	NM_001310529	213234.0	Mm.80075	NM_172515	ENSMUSG00000034151	Zbbx	4931432L23	zinc finger, B-box domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25641899-2	chr15	25641399	25642399	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 1 of 40)	B4A|SINE|B4	19349.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21161782-2	chr13	21161285	21162285	+	672.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18146.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95546821-2	chr10	95546321	95547321	+	672.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027722)	TTS (NM_027722)	12500.0	NR_037212	100526463.0		NR_037212	ENSMUSG00000092867	Mir3058	mir-3058|mmu-mir-3058	microRNA 3058	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26642526-2	chr17	26642026	26643026	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 9 of 9)	intron (NM_026170, intron 9 of 9)	-33870.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128232199-2	chr7	128231699	128232699	+	672.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21A|LTR|ERV1	-5158.0	NM_146205	233912.0	Mm.475117	NM_146205	ENSMUSG00000042178	Armc5	AW049683|BC032200	armadillo repeat containing 5	protein-coding	0.0	2.5	1.0	0.0	0.0	0.0
Merged-chr8-105439030-2	chr8	105438530	105439530	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033371, intron 2 of 10)	B3|SINE|B2	11390.0	NM_001170789	270091.0	Mm.212709	NM_001033371	ENSMUSG00000054320	Lrrc36	BC036564	leucine rich repeat containing 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34909145-2	chr17	34908645	34909645	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286575, intron 21 of 27)	B1_Mur1|SINE|Alu	-5321.0	NM_023557	70129.0	Mm.183126	NM_023557	ENSMUSG00000007034	Slc44a4	2210409B01Rik|NG22|mTPPT1	solute carrier family 44, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43031135-1	chr17	43030635	43031635	+	672.0	f1_balb.idr	intron (NM_178589, intron 1 of 5)	intron (NM_178589, intron 1 of 5)	14580.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	27.0	22.0	23.5	32.0	34.5	25.0
Merged-chr13-115881998-2	chr13	115881498	115882498	+	672.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	427690.0	NM_021459	16392.0	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	0.0	0.5	2.0	0.0	0.0	0.5
Merged-chr6-61138606-1	chr6	61138106	61139106	+	672.0	f0_balb.idr	Intergenic	Intergenic	-41719.0	NM_001164316	232035.0	Mm.150324	NM_183310	ENSMUSG00000039578	Ccser1	6230405M12Rik|C130092O11Rik|Fam190a	coiled-coil serine rich 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25858887-2	chr17	25858387	25859387	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163766, intron 8 of 40)	intron (NM_001163766, intron 8 of 40)	2628.0	NM_001163766	106618.0	Mm.35470	NM_134124	ENSMUSG00000073434	Wdr90	3230401M21Rik|AI551153|mKIAA1924	WD repeat domain 90	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45443831-2	chr4	45443312	45444312	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 5 of 5)	intron (NM_001033306, intron 5 of 5)	-35046.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	0.0	2.5	4.5	0.5	3.5	4.5
Merged-chr11-77821706-2	chr11	77821206	77822206	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291215, intron 11 of 41)	intron (NM_001291215, intron 11 of 41)	20408.0	NM_001291215	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24850402-1	chr7	24849902	24850902	+	672.0	f0_balb.idr	Intergenic	Intergenic	19289.0	NM_182785	232973.0	Mm.189648	NM_182785	ENSMUSG00000062732	Lypd4	4933400F01Rik	Ly6/Plaur domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156311539-2	chr2	156311026	156312026	+	672.0	f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_001316755)	promoter-TSS (NM_001316755)	-947.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	81.0	266.0	174.0	37.0	96.5	71.5
Merged-chr8-10836154-2	chr8	10835654	10836654	+	672.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12C|LTR|ERVK	46300.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77901721-2	chr10	77901221	77902221	+	672.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145152, exon 2 of 2)	5' UTR (NM_145152, exon 2 of 2)	815.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-92784930-2	chr6	92784430	92785430	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175314, intron 28 of 29)	intron (NM_175314, intron 28 of 29)	-78746.0	NM_001081146	243548.0	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-50112599-1	chr2	50112099	50113099	+	672.0	f0_balb.idr	intron (NM_177139, intron 1 of 4)	intron (NM_177139, intron 1 of 4)	46170.0	NM_177139	320343.0	Mm.130607	NM_177139	ENSMUSG00000050447	Lypd6	E130115E03Rik	LY6/PLAUR domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99035614-2	chr15	99035114	99036114	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009448, intron 3 of 3)	intron (NM_009448, intron 3 of 3)	5723.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-83593319-2	chr12	83592819	83593819	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359167, intron 3 of 12)	B3A|SINE|B2	3903.0	NM_001359167	217695.0	Mm.59257	NM_183154	ENSMUSG00000042628	Zfyve1	DFCP1|G630053K23|TAFF1|ZNFN2A1|mKIAA1589	zinc finger, FYVE domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-67153122-2	chr6	67152622	67153622	+	672.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-113857.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6504890-1	chr11	6504390	6505390	+	672.0	f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	16068.0	NM_178440	246177.0	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	0.0	0.0	3.0	7.5	0.0	0.5
Merged-chr11-72773584-2	chr11	72773083	72774083	+	672.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	22256.0	NM_001024926	192986.0	Mm.194755	NM_001024926	ENSMUSG00000057778	Cyb5d2	9330151E16Rik|Gm2	cytochrome b5 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79223156-1	chr15	79222656	79223656	+	672.0	f1_c57bl6.idr	Intergenic	Intergenic	-6017.0	NM_008837	18693.0	Mm.259464	NM_008837	ENSMUSG00000068206	Pick1	Prkcabp	protein interacting with C kinase 1	protein-coding	0.0	7.0	0.5	3.5	2.5	2.5
Merged-chr6-47471900-1	chr6	47471400	47472400	+	672.0	f0_balb.idr	intron (NM_001355550, intron 1 of 21)	MTEa-int|LTR|ERVL-MaLR	17143.0	NM_001355550	26965.0	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	Cul-1	cullin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123064220-1	chr8	123063720	123064720	+	672.0	f1_c57bl6.idr	Intergenic	Intergenic	-1288.0	NM_153176	234847.0	Mm.292075	NM_153176	ENSMUSG00000000738	Spg7	AI452278|AU015315|Cmar|PGN	SPG7, paraplegin matrix AAA peptidase subunit	protein-coding	2.5	0.0	0.0	0.0	1.5	1.0
Merged-chr16-10957469-2	chr16	10956969	10957969	+	672.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35652.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100930176-2	chr11	100929676	100930676	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_213660, intron 1 of 23)	Charlie1|DNA|hAT-Charlie	9364.0	NM_213660	20848.0	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107799419-2	chr13	107798919	107799919	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	90645.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-26153036-1	chr1	26152536	26153536	+	672.0	f1_balb.idr	Intergenic	L1_Mus2|LINE|L1	-323329.0	NM_175642	210933.0	Mm.336569	NM_175642	ENSMUSG00000033569	Adgrb3	A830096D10Rik|Bai3	adhesion G protein-coupled receptor B3	protein-coding	0.0	7.5	0.0	2.0	1.5	1.0
Merged-chr5-102000468-2	chr5	101999968	102000968	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	Tigger5|DNA|TcMar-Tigger	69453.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-33308466-1	chr3	33307966	33308966	+	672.0	f0_balb.idr	Intergenic	Intergenic	-165275.0	NM_001163516	58869.0	Mm.151332	NM_021483	ENSMUSG00000027674	Pex5l	1700016J08Rik|PXR2|Pex2|TRIP8b|pex5Rp	peroxisomal biogenesis factor 5-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-36250234-2	chr8	36249705	36250705	+	672.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081150)	promoter-TSS (NM_001081150)	-689.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	59.5	188.5	103.5	83.5	164.0	106.5
Merged-chr5-18702929-2	chr5	18702429	18703429	+	672.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-342516.0	NM_010305	14677.0	Mm.254629	NM_010305	ENSMUSG00000057614	Gnai1	AU046200|Gialpha1|Gnai-1	guanine nucleotide binding protein (G protein), alpha inhibiting 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-13836112-2	chr17	13835612	13836612	+	671.916626	f1_balb.idr|f1_c57bl6.idr	intron (NR_151731, intron 13 of 33)	intron (NR_151731, intron 13 of 33)	-74718.0	NM_022311	21646.0	Mm.486358	NM_022311	ENSMUSG00000038347	Tcte2	AI429268|Tcte-2	t-complex-associated testis expressed 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99087475-2	chr15	99086975	99087975	+	671.916626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001024702, exon 1 of 2)	exon (NM_001024702, exon 1 of 2)	253.0	NM_001024702	239659.0	Mm.309917	NM_001024702	ENSMUSG00000001076	C1ql4	C1qtnf11|CTRP11	complement component 1, q subcomponent-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-35018532-3	chr4	35018044	35019044	+	671.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 2 of 3)	B1_Mur2|SINE|Alu	-107063.0	NR_040652	73696.0	Mm.1361	NR_040652	ENSMUSG00000085824	Platr9	2410114N07Rik	pluripotency associated transcript 9	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117853662-4	chr8	117853150	117854150	+	671.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-51676.0	NM_001357232	68533.0	Mm.181836	NM_026758	ENSMUSG00000031843	Mphosph6	1110001M01Rik|AA536809|C86426	M phase phosphoprotein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-4748256-4	chr6	4747764	4748764	+	671.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040611, intron 1 of 1)	CpG	958.0	NM_130877	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	5.0	2.0	0.0	0.0	0.0	0.0
Merged-chr7-44931526-2	chr7	44931026	44932026	+	671.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTG)n|Simple_repeat|Simple_repeat	-2036.0	NM_001077264	11771.0	Mm.6877	NM_007458	ENSMUSG00000060279	Ap2a1	Adtaa	adaptor-related protein complex 2, alpha 1 subunit	protein-coding	1.5	4.5	0.5	2.0	1.0	1.0
Merged-chr15-13754157-2	chr15	13753657	13754657	+	671.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-580482.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11581423-2	chr19	11580946	11581946	+	671.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23358.0	NM_026835	68774.0	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	20.0	7.5	21.5	0.0	23.0	7.5
Merged-chr7-83656799-2	chr7	83656256	83657256	+	671.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 12 of 18)	intron (NM_001360088, intron 12 of 18)	-1261.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0.0	1.5	3.0	0.0	1.0	1.5
Merged-chr10-117436926-3	chr10	117436453	117437453	+	671.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10482.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	20.5	64.0	65.5	21.5	60.5	66.0
Merged-chr2-52860451-3	chr2	52860013	52861013	+	671.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	2645.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-79474993-3	chr7	79474493	79475493	+	671.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-8720.0	NM_017462	18975.0	Mm.3616	NM_017462	ENSMUSG00000039176	Polg	AA409516|PolgA	polymerase (DNA directed), gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-89904856-2	chr16	89904356	89905356	+	671.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 3 of 27)	IMPB_01|Satellite|Satellite	55971.0	NM_009384	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-156195728-2	chr4	156195221	156196221	+	671.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_021604, intron 1 of 35)	intron (NM_021604, intron 1 of 35)	1767.0	NM_021604	11603.0	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	0.0	0.0	2.5	2.0	0.0	1.0
Merged-chr9-57836307-2	chr9	57835807	57836807	+	671.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2073.0	NM_019689	56380.0	Mm.425588	NM_019689	ENSMUSG00000004661	Arid3b	Bdp|Dri2	AT rich interactive domain 3B (BRIGHT-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4503651-2	chr2	4503151	4504151	+	671.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 5 of 23)	intron (NM_001177843, intron 5 of 23)	-56103.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75166272-2	chr11	75165772	75166772	+	671.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001098203, exon 2 of 2)	exon (NM_001098203, exon 2 of 2)	1880.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-50704385-2	chr10	50703885	50704885	+	671.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 16 of 41)	intron (NM_198007, intron 16 of 41)	111716.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114671174-2	chr11	114670674	114671674	+	671.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048058, intron 2 of 3)	intron (NM_001048058, intron 2 of 3)	2393.0	NM_001048058	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102553492-3	chr7	102552997	102553997	+	671.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_147101)	promoter-TSS (NM_147101)	-789.0	NM_147101	259105.0	Mm.424092	NM_147101	ENSMUSG00000073977	Olfr549	MOR31-3	olfactory receptor 549	protein-coding	8.5	13.5	8.0	4.0	10.5	9.5
Merged-chr3-38519602-3	chr3	38519099	38520099	+	671.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-34783.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145885375-3	chr2	145884879	145885879	+	671.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 12 of 12)	intron (NM_028724, intron 12 of 12)	-17862.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	46.5	39.5	62.5	40.0	69.5	48.5
Merged-chr7-80636866-2	chr7	80636366	80637366	+	671.666687	f1_balb.idr|f1_c57bl6.idr	intron (NR_040343, intron 2 of 4)	intron (NR_040343, intron 2 of 4)	849.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-99188639-3	chr6	99188133	99189133	+	671.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	77882.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130809246-2	chr4	130808746	130809746	+	671.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	16709.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150016263-2	chr4	150015763	150016763	+	671.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7240.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	1.5	8.5	1.0	0.0	0.0	3.5
Merged-chr14-70775452-2	chr14	70774952	70775952	+	671.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010071, intron 1 of 4)	intron (NM_010071, intron 1 of 4)	1071.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	10.0	33.5	17.0	12.0	28.0	27.5
Merged-chr12-79011186-2	chr12	79010687	79011687	+	671.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-3910.0	NM_178745	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	2.0	3.0	5.0	10.0	0.0	6.5
Merged-chr9-25318293-2	chr9	25317793	25318793	+	671.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65401.0	NM_001359738	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109421962-2	chr4	109421462	109422462	+	671.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145948, intron 3 of 17)	intron (NM_001145948, intron 3 of 17)	6315.0	NM_001145948	230603.0	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-39655648-2	chr8	39655152	39656152	+	671.625	f0_balb.idr|f0_c57.idr	Intergenic	Lx7|LINE|L1	-12974.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	3.0	6.5	1.5	0.0	0.5	3.0
Merged-chr11-74992495-2	chr11	74991995	74992995	+	671.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 10 of 18)	intron (NM_001002764, intron 10 of 18)	66623.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-66497321-4	chr8	66496798	66497798	+	671.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR55|LTR|ERVL?	-10768.0	NM_001357208	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-43477910-2	chr6	43477410	43478410	+	671.583313	f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 6 of 8)	MLTR25C|LTR|ERVK	35481.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100090256-2	chr12	100089756	100090756	+	671.56665	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-22075.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120024786-3	chr6	120024295	120025295	+	671.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198703, intron 1 of 27)	intron (NM_198703, intron 1 of 27)	9516.0	NR_030487	735290.0		NR_030487	ENSMUSG00000076217	Mir706	Mirn706|mir-706|mmu-mir-706	microRNA 706	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41974947-2	chr19	41974447	41975447	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028152, intron 1 of 30)	intron (NM_028152, intron 1 of 30)	6189.0	NM_028152	72199.0	Mm.218940	NM_028152	ENSMUSG00000025159	Mms19	2410001K24Rik|2610042O15Rik|AI316855|C79368|C86341|Mms19l	MMS19 (MET18 S. cerevisiae)	protein-coding	33.0	65.5	39.5	19.0	39.5	25.0
Merged-chr12-72461554-2	chr12	72461054	72462054	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030070, intron 10 of 24)	MLTR18D_MM|LTR|ERVK	19305.0	NM_001142729	78257.0	Mm.266280	NM_030070	ENSMUSG00000021090	Lrrc9	4921529O18Rik|4930432K16Rik	leucine rich repeat containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104109555-2	chr8	104109055	104110055	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 1 of 11)	intron (NM_009868, intron 1 of 11)	-3682.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-53781249-2	chr6	53780749	53781749	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39576.0	NM_025817	66873.0	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106246492-2	chr9	106245994	106246994	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020559, intron 2 of 10)	intron (NM_020559, intron 2 of 10)	1236.0	NM_001291835	11655.0	Mm.290578	NM_020559	ENSMUSG00000032786	Alas1	ALAS|ALAS-N|Alas-1|Alas-h	aminolevulinic acid synthase 1	protein-coding	1.0	6.0	0.5	5.5	2.5	4.0
Merged-chr7-28353014-2	chr7	28352514	28353514	+	671.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013647)	TTS (NM_013647)	1474.0	NR_028129	100302567.0		NR_028129		AF357399	MBI-142	snoRNA AF357399	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122390023-2	chr5	122389523	122390523	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1855.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45551235-2	chr14	45550735	45551735	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045809, intron 3 of 6)	intron (NR_045809, intron 3 of 6)	7525.0	NR_045809	67651.0	Mm.55930	NR_045809	ENSMUSG00000115324	4930527F14Rik	-	RIKEN cDNA 4930527F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89293361-2	chr6	89292861	89293861	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7636.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-69528606-2	chr13	69528134	69529134	+	671.5	f0_balb.idr|f1_balb.idr	intron (NM_198600, intron 1 of 12)	intron (NM_198600, intron 1 of 12)	5230.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	2.5	17.5	7.0	9.0	18.5	12.5
Merged-chr9-22066561-2	chr9	22066061	22067061	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177318, intron 2 of 8)	intron (NM_177318, intron 2 of 8)	-4441.0	NR_040406	100503652.0	Mm.439941	NR_040406	ENSMUSG00000096981	Gm16845	-	predicted gene, 16845	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121650976-2	chr8	121650476	121651476	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080855, intron 1 of 12)	intron (NM_080855, intron 1 of 12)	957.0	NM_080855	142682.0	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128128102-2	chr7	128127602	128128602	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1466.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	3.0	1.0	3.0	1.0	0.0	5.5
Merged-chr8-105805354-2	chr8	105804854	105805854	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145824, intron 3 of 13)	intron (NM_145824, intron 3 of 13)	21996.0	NM_145824	74334.0	Mm.4206	NM_145824	ENSMUSG00000037415	Ranbp10	4432417N03Rik	RAN binding protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-59024736-2	chr16	59024236	59025236	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	3169.0	NM_146321	258318.0	Mm.377434	NM_146321	ENSMUSG00000047960	Olfr186	MOR183-9	olfactory receptor 186	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-29646659-2	chr18	29646159	29647159	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-150243.0	NR_045391	78058.0	Mm.416952	NR_045391		4930578E11Rik	-	RIKEN cDNA 4930578E11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32512235-2	chr2	32511735	32512735	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-23124.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21959358-2	chr9	21958858	21959858	+	671.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010149, exon 8 of 8)	exon (NM_010149, exon 8 of 8)	-3352.0	NR_132099	100049077.0	Mm.46647	NR_132099		Gm45914	-	predicted gene, 45914	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55918920-2	chr19	55918420	55919420	+	671.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001331147, exon 10 of 14)	exon (NM_001331147, exon 10 of 14)	23599.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-98180367-2	chr5	98179867	98180867	+	671.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029947)	promoter-TSS (NM_029947)	-502.0	NM_029947	77630.0	Mm.332511	NM_029947	ENSMUSG00000035456	Prdm8	4930565F05Rik|PFM5	PR domain containing 8	protein-coding	0.0	3.0	0.0	0.0	0.0	0.0
Merged-chr3-27211859-2	chr3	27211359	27212359	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	MLTR14|LTR|ERV1	28855.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-67196811-2	chr6	67196311	67197311	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70168.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116667399-2	chr4	116666899	116667899	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-15725.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-7115267-2	chr15	7114767	7115767	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14305.0	NM_001113386	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-41761968-2	chr6	41761468	41762468	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10329.0	NM_146576	258569.0	Mm.377571	NM_146576	ENSMUSG00000045479	Olfr459	MOR120-1	olfactory receptor 459	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123345373-2	chr5	123344873	123345873	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029850, intron 1 of 5)	CpG	925.0	NM_029850	77045.0	Mm.151960	NM_029850	ENSMUSG00000029438	Bcl7a	4432415N06Rik|AI448316	B cell CLL/lymphoma 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122267941-2	chr8	122267441	122268441	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14200.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8005585-2	chr10	8005085	8006085	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49462.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73370529-2	chr12	73370029	73371029	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_046013, intron 3 of 3)	intron (NR_046013, intron 3 of 3)	39034.0	NR_046013	380765.0	Mm.490476	NR_046013	ENSMUSG00000056359	D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	0.5	8.5	8.5	2.5	19.5	4.0
Merged-chr9-96668828-2	chr9	96668328	96669328	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37325.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	2.0	5.0	2.5	1.0	0.0	3.5
Merged-chr15-55301561-2	chr15	55301061	55302061	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6189.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92690788-1	chr5	92690288	92691288	+	671.5	f0_balb.idr	intron (NM_015756, intron 1 of 10)	intron (NM_015756, intron 1 of 10)	7353.0	NM_015756	27428.0	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10689891-2	chr16	10689391	10690391	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177562, intron 19 of 22)	intron (NM_177562, intron 19 of 22)	95645.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-8114921-2	chr14	8114421	8115421	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	16710.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128884503-2	chr4	128884003	128885003	+	671.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_178110, exon 1 of 5)	exon (NM_178110, exon 1 of 5)	363.0	NM_178110	67525.0	Mm.30653	NM_178110	ENSMUSG00000041000	Trim62	6330414G21Rik|AI450348|Dear1	tripartite motif-containing 62	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108561611-2	chr9	108561111	108562111	+	671.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011830, exon 3 of 14)	exon (NM_011830, exon 3 of 14)	1110.0	NM_011830	23918.0	Mm.6065	NM_011830	ENSMUSG00000062867	Impdh2	IMPD	inosine monophosphate dehydrogenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47446295-2	chr19	47445795	47446795	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	18116.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	26.0	10.0	13.0	7.5	28.0	27.5
Merged-chr3-107159628-2	chr3	107159140	107160140	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-23503.0	NM_001081140	242151.0	Mm.245155	NM_001081140	ENSMUSG00000042861	Kcna10	Gm1962|Kcna8|Kv1.8	potassium voltage-gated channel, shaker-related subfamily, member 10	protein-coding	7.5	0.0	0.0	8.5	4.5	0.5
Merged-chr11-103268574-2	chr11	103268074	103269074	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1173.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	0.0	0.0	0.0	2.0	2.0	4.0
Merged-chr7-81319441-2	chr7	81318941	81319941	+	671.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008803, exon 16 of 22)	exon (NM_008803, exon 16 of 22)	25793.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-42613293-2	chr17	42612793	42613793	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	AmnSINE1|SINE|Deu	-1980.0	NM_181753	353344.0	Mm.184937	NM_181753	ENSMUSG00000043972	Opn5	Gpr136|Neuropsin|PGR12|TMEM13	opsin 5	protein-coding	0.0	8.5	8.5	0.0	6.0	5.5
Merged-chr15-59198020-2	chr15	59197520	59198520	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108928.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	9.5	2.5	1.0	0.0	0.0	2.5
Merged-chr11-76216626-2	chr11	76216125	76217125	+	671.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021294)	promoter-TSS (NM_021294)	947.0	NM_177367	276919.0	Mm.482713	NM_177367	ENSMUSG00000049396	Gemin4	4932415L08Rik|AU015359	gem nuclear organelle associated protein 4	protein-coding	1.5	1.0	3.5	0.0	0.0	1.5
Merged-chr7-96484158-2	chr7	96483658	96484658	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 3 of 32)	intron (NM_011858, intron 3 of 32)	-142194.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	0.0	0.0	0.0	1.5	0.0	0.0
Merged-chr2-168003613-2	chr2	168003113	168004113	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080708, intron 2 of 21)	intron (NM_001080708, intron 2 of 21)	6980.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4208891-2	chr19	4208391	4209391	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5347.0	NR_132308	105948585.0	Mm.32518	NR_132308		Gm45928	Clcf1-pold4	predicted gene, 45928	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126500943-2	chr7	126500443	126501443	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361487, intron 4 of 21)	intron (NM_001361487, intron 4 of 21)	1482.0	NM_001347658	233871.0	Mm.231450	NM_183020	ENSMUSG00000032637	Atxn2l	A2D|A2LG|A2RP|A2lp|Atxnl2	ataxin 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114681914-2	chr5	114681414	114682414	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019821, intron 1 of 4)	intron (NM_019821, intron 1 of 4)	9021.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45480867-2	chr2	45480367	45481367	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-215738.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80384784-2	chr11	80384284	80385284	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045038, intron 1 of 16)	intron (NR_045038, intron 1 of 16)	1505.0	NM_001130171	22680.0	Mm.401332	NM_011751	ENSMUSG00000017421	Zfp207	8430401D15Rik|BuGZ|Zep|Znf207	zinc finger protein 207	protein-coding	1.5	6.5	2.5	1.5	6.5	3.0
Merged-chr7-134566569-2	chr7	134566069	134567069	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104118.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-118847138-4	chr12	118846649	118847649	+	671.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177082, intron 1 of 2)	CpG	820.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75365690-1	chr7	75365190	75366190	+	671.5	f0_balb.idr	Intergenic	Intergenic	-56428.0	NM_153579	64176.0	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-28311069-1	chr5	28310569	28311569	+	671.5	f0_c57.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-6120.0	NM_028234	381626.0	Mm.304075	NM_028234	ENSMUSG00000048271	Rbm33	3200001K10Rik|6430512A10Rik|AA386890|Prr8	RNA binding motif protein 33	protein-coding	6.0	9.0	7.0	0.0	1.5	1.0
Merged-chr2-145814753-2	chr2	145814253	145815253	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	B1_Mur1|SINE|Alu	28637.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-60813670-1	chr9	60813170	60814170	+	671.5	f0_balb.idr	intron (NM_001357408, intron 1 of 19)	intron (NM_001357408, intron 1 of 19)	19228.0	NM_001357407	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12410818-2	chr13	12410318	12411318	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144835, intron 15 of 44)	B2_Mm1t|SINE|B2	15443.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155068714-2	chr4	155068214	155069214	+	671.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001042407, exon 3 of 6)	exon (NM_001042407, exon 3 of 6)	1684.0	NM_001042407	668173.0	Mm.133114	NM_001042407	ENSMUSG00000029047	Pex10	AV128229|Gm142	peroxisomal biogenesis factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102140719-3	chr11	102140213	102141213	+	671.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4800.0	NM_145829	217214.0	Mm.31686	NM_145829	ENSMUSG00000048217	Nags	1700120E20Rik|argA	N-acetylglutamate synthase	protein-coding	10.5	2.0	3.5	14.0	7.0	9.0
Merged-chr2-120469403-3	chr2	120468908	120469908	+	671.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040608)	promoter-TSS (NR_040608)	-41.0	NR_040608	70933.0	Mm.444742	NR_040608		4931402G19Rik	-	RIKEN cDNA 4931402G19 gene	ncRNA	0.0	8.5	5.0	4.5	8.0	7.0
Merged-chr14-25452841-3	chr14	25452348	25453348	+	671.422241	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-6337.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51852180-2	chr13	51851680	51852680	+	671.416687	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	5505.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101982843-2	chr15	101982344	101983344	+	671.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21498.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74895402-2	chr1	74894902	74895902	+	671.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2259.0	NM_021541	12958.0	Mm.86656	NM_021541	ENSMUSG00000006546	Cryba2	E130107M19Rik	crystallin, beta A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91517527-2	chr2	91517036	91518036	+	671.333374	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9226.0	NM_001165989	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	13.0	22.0	8.0	15.0	6.5	17.5
Merged-chr15-82999149-3	chr15	82998653	82999653	+	671.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001271411, exon 6 of 6)	3' UTR (NM_001271411, exon 6 of 6)	23985.0	NM_028728	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43539893-3	chr7	43539411	43540411	+	671.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6740.0	NM_021293	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-31221295-3	chr9	31220726	31221726	+	671.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-9378.0	NM_001102456	11804.0	Mm.19133	NM_009691	ENSMUSG00000031996	Aplp2	AI790698|APLP-2|CDEBP	amyloid beta (A4) precursor-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17587239-2	chr10	17586739	17587739	+	671.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-135989.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-76677065-1	chr2	76676565	76677565	+	671.333313	f0_balb.idr	intron (NM_031256, intron 1 of 7)	intron (NM_031256, intron 1 of 7)	1750.0	NM_031256	83435.0	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163727672-3	chr2	163727170	163728170	+	671.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001272052, intron 10 of 11)	intron (NM_001272052, intron 10 of 11)	22569.0	NM_007398	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	9.5	0.0	0.0	9.5	0.0	0.0
Merged-chr10-7204133-3	chr10	7203497	7204497	+	671.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172546, intron 1 of 12)	intron (NM_172546, intron 1 of 12)	8240.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	2.5	12.0	0.0	1.5	0.0	2.0
Merged-chr4-83289421-1	chr4	83288921	83289921	+	671.333313	f0_balb.idr	intron (NM_027238, intron 2 of 19)	intron (NM_027238, intron 2 of 19)	34768.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0.5	7.0	0.0	0.5	6.0	2.0
Merged-chr3-41082034-4	chr3	41081530	41082530	+	671.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027558, intron 1 of 2)	intron (NM_027558, intron 1 of 2)	1016.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-44757631-2	chr4	44757131	44758131	+	671.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_138590, intron 1 of 8)	intron (NM_138590, intron 1 of 8)	1072.0	NM_138590	319885.0	Mm.331576	NM_138590	ENSMUSG00000035649	Zcchc7	4930572I07Rik|D4Wsu132e	zinc finger, CCHC domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19197677-2	chr3	19197177	19198177	+	671.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356295, intron 1 of 7)	ID_B1|SINE|B4	9382.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153953964-2	chr2	153953463	153954463	+	671.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034875, intron 10 of 15)	intron (NM_001034875, intron 10 of 15)	13101.0	NM_001034875	381399.0	Mm.315572	NM_001034875	ENSMUSG00000074665	Bpifb4	Gm1006|Lplunc4	BPI fold containing family B, member 4	protein-coding	1.0	0.5	0.0	0.0	0.0	0.0
Merged-chr10-34283656-2	chr10	34283156	34284156	+	671.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009433, exon 1 of 1)	3' UTR (NM_009433, exon 1 of 1)	1466.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-39182930-3	chr3	39182430	39183430	+	671.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	295990.0	NM_183221	329628.0	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59295441-3	chr4	59294959	59295959	+	671.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	35408.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29201873-2	chr19	29201373	29202373	+	671.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49930.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80986285-2	chr18	80985785	80986785	+	671.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_178280, intron 1 of 3)	CpG	293.0	NM_178280	20689.0	Mm.215917	NM_178280	ENSMUSG00000024565	Sall3	B130022O04Rik|Msal|Msal-1|Sal|Salt|Spalt	spalt like transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100826790-4	chr11	100826285	100827285	+	671.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113563, intron 1 of 18)	intron (NM_001113563, intron 1 of 18)	-4215.0	NM_011489	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	0.0	0.5	3.5	8.0	0.0	7.0
Merged-chr14-69249392-3	chr14	69248869	69249869	+	671.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026331, intron 2 of 3)	intron (NM_026331, intron 2 of 3)	35734.0	NM_026331	67712.0	Mm.293635	NM_026331	ENSMUSG00000034248	Slc25a37	1700020E22Rik|4930513O14Rik|4930526G11Rik|AI848481|C330015G08Rik|Mfrn|Mfrn1|Mscp|frascati|mitoferrin	solute carrier family 25, member 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105504809-1	chr8	105504309	105505309	+	671.166687	f0_balb.idr	Intergenic	Intergenic	-7907.0	NM_175160	70796.0	Mm.100917	NM_175160	ENSMUSG00000039199	Zdhhc1	4432412D04Rik|DHHC-1	zinc finger, DHHC domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84840823-2	chr15	84840323	84841323	+	671.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356573, intron 2 of 12)	intron (NM_001356573, intron 2 of 12)	14276.0	NM_001356573	271305.0	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57274821-2	chr17	57274321	57275321	+	671.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-4279.0	NM_001163816	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	1.0	0.0	0.0	5.5	1.0	0.0
Merged-chr7-99378500-2	chr7	99378000	99379000	+	671.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3018.0	NM_001362168	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	2.5	14.5	7.0	4.5	5.0	6.5
Merged-chr11-54796555-2	chr11	54796055	54797055	+	671.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8852.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-143175395-3	chr6	143174868	143175868	+	671.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029250, intron 1 of 7)	PB1D11|SINE|Alu	8138.0	NM_029250	75320.0	Mm.272548	NM_029250	ENSMUSG00000030275	Etnk1	1110061E11Rik|4930555L11Rik|AI195356|AI841245|C80956|D6Ertd3e|EKI1	ethanolamine kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53395073-1	chr4	53394573	53395573	+	671.0	f0_balb.idr	Intergenic	Intergenic	-45340.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128664842-2	chr8	128664342	128665342	+	671.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20812.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-78896724-1	chr1	78896224	78897224	+	671.0	f1_c57bl6.idr	intron (NR_151519, intron 3 of 3)	MLT1B|LTR|ERVL-MaLR	79813.0	NM_021342	57814.0	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding	5.5	10.5	4.5	3.5	26.0	5.0
Merged-chr7-19241296-2	chr7	19240796	19241796	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207525, intron 1 of 1)	PB1D10|SINE|Alu	12907.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	0.0	0.5	1.0	0.0	2.0	0.0
Merged-chr7-29000882-2	chr7	29000382	29001382	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355054, intron 27 of 31)	intron (NM_001355054, intron 27 of 31)	18028.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141881888-1	chr4	141881388	141882388	+	671.0	f1_c57bl6.idr	Intergenic	Intergenic	-6968.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	0.0	8.0	1.0	3.5	0.0	4.0
Merged-chr5-21452034-1	chr5	21451534	21452534	+	671.0	f0_balb.idr	intron (NM_177869, intron 5 of 7)	intron (NM_177869, intron 5 of 7)	27131.0	NM_177869	330050.0	Mm.40655	NM_177869	ENSMUSG00000047221	Fam185a	4631428I10|AI847670	family with sequence similarity 185, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24381522-2	chr5	24381022	24382022	+	671.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008713, exon 21 of 26)	exon (NM_008713, exon 21 of 26)	10621.0	NM_001002897	213948.0	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19659560-2	chr3	19659060	19660060	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081281, intron 3 of 9)	intron (NM_001081281, intron 3 of 9)	15100.0	NM_001081281	381485.0	Mm.35419	NM_001081281	ENSMUSG00000060913	Trim55	D830041C10Rik|Murf2|Rnf29	tripartite motif-containing 55	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125476899-2	chr5	125476399	125477399	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030210, intron 1 of 17)	intron (NM_030210, intron 1 of 17)	1026.0	NM_030210	78894.0	Mm.431573	NM_030210	ENSMUSG00000029482	Aacs	2210408B16Rik|SUR5	acetoacetyl-CoA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4620314-1	chr2	4619814	4620814	+	671.0	f0_c57.idr	Intergenic	Intergenic	31821.0	NM_026045	67229.0	Mm.38529	NM_026045	ENSMUSG00000039449	Prpf18	2810441A10Rik	pre-mRNA processing factor 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-82917921-1	chr6	82917421	82918421	+	671.0	f1_balb.idr	exon (NM_011350, exon 10 of 14)	exon (NM_011350, exon 10 of 14)	21848.0	NM_001308374	20355.0	Mm.270543	NM_011350	ENSMUSG00000000627	Sema4f	Sema W	sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	protein-coding	1.0	4.0	0.5	7.0	0.0	0.0
Merged-chr9-90043792-2	chr9	90043292	90044292	+	671.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY3-int|LTR|ERVK	-10475.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	0.0	29.5	33.0	2.5	20.5	2.0
Merged-chr1-92799776-1	chr1	92799276	92800276	+	671.0	f0_balb.idr	Intergenic	Intergenic	-31869.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9018117-1	chr3	9017617	9018617	+	671.0	f1_c57bl6.idr	Intergenic	Intergenic	-13394.0	NM_001357075	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	5.5	5.5	5.0	7.5	3.5	3.5
Merged-chr13-95374179-4	chr13	95373629	95374629	+	671.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025630, intron 1 of 13)	intron (NM_025630, intron 1 of 13)	1228.0	NM_025630	66549.0	Mm.36785	NM_025630	ENSMUSG00000021681	Aggf1	2010009L17Rik|2310029P06Rik|AW112072|Peg3|VG5Q	angiogenic factor with G patch and FHA domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114018661-2	chr6	114018161	114019161	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009723, intron 1 of 21)	Lx8|LINE|L1	23419.0	NM_009723	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127113194-2	chr7	127112694	127113694	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133686, intron 1 of 3)	intron (NM_133686, intron 1 of 3)	8835.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151575318-3	chr1	151574797	151575797	+	671.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	3924.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80698742-2	chr18	80698242	80699242	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 1 of 9)	intron (NM_198429, intron 1 of 9)	9431.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70202949-2	chr9	70202449	70203449	+	671.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4401.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-37973890-2	chr15	37973390	37974390	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112721, intron 54 of 58)	intron (NM_001112721, intron 54 of 58)	-12835.0	NM_199476	382985.0	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-53637793-2	chr8	53637293	53638293	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146208, intron 1 of 9)	intron (NM_146208, intron 1 of 9)	1272.0	NM_146208	234258.0	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121202566-2	chr5	121202088	121203088	+	671.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1913.0	NM_011290	19988.0	Mm.262021	NM_011290	ENSMUSG00000029614	Rpl6	Taxreb107	ribosomal protein L6	protein-coding	6.0	0.0	0.0	5.5	0.5	0.0
Merged-chr19-44591950-2	chr19	44591451	44592451	+	671.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29097.0	NM_176958	319594.0	Mm.145278	NM_176958	ENSMUSG00000036450	Hif1an	2310046M24Rik|A830014H24Rik|FIH|FIH1	hypoxia-inducible factor 1, alpha subunit inhibitor	protein-coding	0.0	0.0	1.5	0.0	2.0	0.0
Merged-chr4-150545958-1	chr4	150545458	150546458	+	671.0	f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	RMER19B|LTR|ERVK	106216.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	14.5	48.0	22.0	23.5	72.5	30.5
Merged-chr14-118141094-2	chr14	118140594	118141594	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021434, intron 2 of 8)	intron (NM_021434, intron 2 of 8)	3967.0	NM_021434	58245.0	Mm.275411	NM_021434	ENSMUSG00000022131	Gpr180	AB041545|E130016I23Rik|Itr	G protein-coupled receptor 180	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-159528641-1	chr3	159528141	159529141	+	671.0	f0_balb.idr	intron (NM_029523, intron 11 of 11)	intron (NM_029523, intron 11 of 11)	33208.0	NM_001172092	76131.0	Mm.371655	NM_029523	ENSMUSG00000028175	Depdc1a	5830484J08Rik|Depdc1	DEP domain containing 1a	protein-coding	0.0	0.0	0.5	0.0	1.0	2.0
Merged-chr6-48642969-3	chr6	48642465	48643465	+	671.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4269.0	NM_001077410	243374.0	Mm.86514	NM_212486	ENSMUSG00000064262	Gimap8	Gm457|IAN9|IMAP8	GTPase, IMAP family member 8	protein-coding	0.5	4.0	3.0	1.5	4.0	2.5
Merged-chr11-115207976-1	chr11	115207476	115208476	+	671.0	f1_c57bl6.idr	intron (NM_001033393, intron 8 of 9)	intron (NM_001033393, intron 8 of 9)	20489.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	0.0	2.5	1.5	0.0	4.5	3.5
Merged-chr10-95262612-3	chr10	95262106	95263106	+	671.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	61103.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-92844036-2	chr8	92843536	92844536	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008610, intron 10 of 12)	intron (NM_008610, intron 10 of 12)	-11297.0	NM_173014	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	9.5	0.5	9.0	8.0	6.0	2.0
Merged-chr17-28330218-2	chr17	28329718	28330718	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357628, intron 4 of 5)	intron (NM_001357628, intron 4 of 5)	1653.0	NM_001357628	19896.0	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-105835075-3	chr2	105834570	105835570	+	671.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023876, intron 4 of 9)	intron (NM_023876, intron 4 of 9)	69494.0	NM_023876	77766.0	Mm.3608	NM_023876	ENSMUSG00000027167	Elp4	A330107A17Rik|Paxneb	elongator acetyltransferase complex subunit 4	protein-coding	0.0	0.0	1.5	1.0	0.0	0.0
Merged-chr19-7493202-2	chr19	7492702	7493702	+	671.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163505)	promoter-TSS (NM_001163505)	-838.0	NM_001163505	109168.0	Mm.264016	NM_146091	ENSMUSG00000024759	Atl3	4633402C03Rik|5730596K20Rik|AI465397|AW228836	atlastin GTPase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43452960-2	chr4	43452460	43453460	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110322, intron 2 of 6)	intron (NM_001110322, intron 2 of 6)	1666.0	NM_001110320	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-162572249-1	chr1	162571749	162572749	+	671.0	f1_balb.idr	intron (NM_016796, intron 1 of 7)	intron (NM_016796, intron 1 of 7)	1421.0	NM_016796	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	46.0	72.0	91.0	69.0	174.0	140.0
Merged-chr4-6406975-2	chr4	6406475	6407475	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 26 of 30)	intron (NM_010945, intron 26 of 30)	41295.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75468451-2	chr11	75467951	75468951	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027249, intron 1 of 4)	intron (NM_027249, intron 1 of 4)	401.0	NM_027249	380712.0	Mm.41393	NM_027249	ENSMUSG00000038217	Tlcd2	-	TLC domain containing 2	protein-coding	0.0	0.0	3.5	0.5	17.0	11.5
Merged-chr13-31017645-2	chr13	31017145	31018145	+	671.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-43598.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76154941-2	chr16	76154441	76155441	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040575, intron 2 of 2)	intron (NR_040575, intron 2 of 2)	32328.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-6644624-1	chr16	6644124	6645124	+	671.0	f1_c57bl6.idr	intron (NM_001359725, intron 4 of 16)	B4A|SINE|B4	-394746.0	NM_001359729	268859.0	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	2.5	0.0	0.0	2.0	0.0	4.0
Merged-chr5-92091851-3	chr5	92091353	92092353	+	671.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-8109.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-56100356-3	chr1	56099831	56100831	+	671.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81353.0	NR_126076	69356.0	Mm.393775	NR_126075	ENSMUSG00000100372	1700003I22Rik	-	RIKEN cDNA 1700003I22 gene	ncRNA	2.5	3.5	10.5	11.0	3.0	5.0
Merged-chr5-129007626-2	chr5	129007122	129008122	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152615, intron 1 of 11)	intron (NR_152615, intron 1 of 11)	950.0	NR_152615	13852.0	Mm.260716	NM_007941	ENSMUSG00000029428	Stx2	AW538950|Epim|G1-536-1|Syn-2|repro34	syntaxin 2	protein-coding	18.0	6.5	8.5	2.5	4.0	5.5
Merged-chr8-40861819-1	chr8	40861319	40862319	+	671.0	f0_c57.idr	promoter-TSS (NM_001044740)	promoter-TSS (NM_001044740)	-548.0	NM_007514	11988.0	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	1.5	2.5	2.5	0.0	0.0	0.0
Merged-chr6-127398299-2	chr6	127397799	127398799	+	671.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-48541.0	NM_001346513	101187.0	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137784662-2	chr5	137784162	137785162	+	671.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_144913, exon 1 of 4)	exon (NM_144913, exon 1 of 4)	2039.0	NM_144913	231803.0	Mm.61193	NM_144913	ENSMUSG00000029726	Mepce	Bcdin3|D5Wsu46e	methylphosphate capping enzyme	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35429721-2	chr17	35429246	35430246	+	671.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	4869.0	NM_207648	110557.0	Mm.439827	NM_207648	ENSMUSG00000073409	H2-Q6	0610037M15Rik|H-2Q6|Qa-6|Qa6	histocompatibility 2, Q region locus 6	protein-coding	2.5	0.0	0.0	0.0	1.0	0.5
Merged-chr11-11819430-2	chr11	11818930	11819930	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016672, intron 12 of 14)	intron (NM_016672, intron 12 of 14)	-10468.0	NM_001163360	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-36456997-2	chr10	36456497	36457497	+	671.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-49810.0	NM_001253355	319415.0	Mm.332442	NM_001081208	ENSMUSG00000044499	Hs3st5	D930005L05Rik|Gm1151|Hs3ost5	heparan sulfate (glucosamine) 3-O-sulfotransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81867327-2	chr7	81866827	81867827	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291282, intron 3 of 9)	intron (NM_001291282, intron 3 of 9)	4640.0	NM_001291282	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34246246-2	chr5	34245746	34246746	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 1 of 12)	intron (NM_001015039, intron 1 of 12)	42078.0	NM_001015039	231125.0	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	0.0	2.0	0.5	0.0	2.0	0.5
Merged-chr9-44880808-2	chr9	44880308	44881308	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081049, intron 1 of 35)	intron (NM_001081049, intron 1 of 35)	466.0	NM_001357549	214162.0	Mm.2389	NM_001081049	ENSMUSG00000002028	Kmt2a	6430520K01|ALL-1|All1|Cxxc7|HRX|HTRX1|Mll|Mll1|mKIAA4050	lysine (K)-specific methyltransferase 2A	protein-coding	0.5	6.5	9.5	1.0	10.0	8.5
Merged-chr5-23431208-2	chr5	23430708	23431708	+	671.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_040469)	TTS (NR_040469)	3145.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	6.5	6.5	10.0	2.0	26.5	16.5
Merged-chr5-64343806-1	chr5	64343306	64344306	+	671.0	f1_c57bl6.idr	intron (NM_001289514, intron 17 of 18)	MTE2b|LTR|ERVL-MaLR	113449.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	104.0	236.0	173.5	41.0	44.0	37.0
Merged-chr15-100375259-2	chr15	100374759	100375759	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002900, intron 3 of 3)	B3|SINE|B2	10674.0	NM_001002900	380975.0	Mm.268451	NM_001002900	ENSMUSG00000093550	Higd1c	Gm921|HIG1-4|Yghl1-4	HIG1 domain family, member 1C	protein-coding	1.0	1.5	0.0	0.0	1.5	0.0
Merged-chr7-96908403-2	chr7	96907903	96908903	+	671.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001310762, exon 33 of 33)	3' UTR (NM_001310762, exon 33 of 33)	-43124.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-92334703-1	chr13	92334203	92335203	+	671.0	f0_balb.idr	intron (NM_001311120, intron 8 of 23)	intron (NM_001311120, intron 8 of 23)	-20080.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	0.0	0.0	0.5	1.0	6.5	3.0
Merged-chr14-51931031-1	chr14	51930531	51931531	+	671.0	f0_balb.idr	Intergenic	Intergenic	-8258.0	NM_001011687	497071.0	Mm.378602	NM_001011687	ENSMUSG00000068392	Rnase13	-	ribonuclease, RNase A family, 13 (non-active)	protein-coding	0.0	3.0	2.5	0.0	0.5	4.5
Merged-chr4-45949715-1	chr4	45949215	45950215	+	671.0	f1_balb.idr	intron (NM_198660, intron 37 of 37)	intron (NM_198660, intron 37 of 37)	-15620.0	NM_001290475	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	33.0	81.0	42.0	9.0	41.0	23.0
Merged-chr19-6494773-2	chr19	6494273	6495273	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 17 of 22)	intron (NM_001205234, intron 17 of 22)	48297.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25015283-1	chr8	25014783	25015783	+	671.0	f1_c57bl6.idr	intron (NM_001270996, intron 1 of 21)	intron (NM_001270996, intron 1 of 21)	1639.0	NM_001270996	11502.0	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	3.5	18.0	6.0	3.0	6.5	9.5
Merged-chr1-171282728-2	chr1	171282228	171283228	+	671.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013919, exon 11 of 13)	exon (NM_013919, exon 11 of 13)	-1542.0	NM_008911	19044.0	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	2.0	20.0	5.0	2.0	16.0	8.5
Merged-chr1-128472712-2	chr1	128472212	128473212	+	671.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55296.0	NM_145507	226414.0	Mm.28693	NM_145507	ENSMUSG00000026356	Dars	5730439G15Rik	aspartyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr9-24407704-2	chr9	24407204	24408204	+	671.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR18D_MM|LTR|ERVK	95436.0	NM_001359948	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88309760-2	chr7	88309260	88310260	+	671.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009982, exon 7 of 7)	exon (NM_009982, exon 7 of 7)	31675.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.5	0.0	0.0	11.0	7.0	0.0
Merged-chr7-79270430-2	chr7	79269930	79270930	+	671.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-2836.0	NM_018811	54608.0	Mm.365490	NM_018811	ENSMUSG00000039202	Abhd2	2210009N18Rik|LABH2|Labh-2	abhydrolase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-56119363-2	chr9	56118863	56119863	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011193, intron 3 of 14)	intron (NM_011193, intron 3 of 14)	29387.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139630863-1	chr4	139630363	139631363	+	671.0	f1_c57bl6.idr	intron (NM_175438, intron 1 of 14)	URR1B|DNA|hAT-Charlie	7969.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	7.0	5.0	4.0	0.0	4.5	2.0
Merged-chr9-119266192-1	chr9	119265692	119266692	+	671.0	f0_balb.idr	intron (NM_001359582, intron 8 of 18)	intron (NM_001359582, intron 8 of 18)	-34500.0	NR_033303	109280.0	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	28.0	35.0	39.5	19.0	32.5	26.0
Merged-chr7-28397790-2	chr7	28397208	28398208	+	670.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019458, intron 11 of 13)	intron (NM_019458, intron 11 of 13)	4712.0	NM_019458	54624.0	Mm.7916	NM_019458	ENSMUSG00000003437	Paf1	5730511K23Rik|AA675045	Paf1, RNA polymerase II complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41403474-2	chr19	41402974	41403974	+	670.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18404.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34295125-2	chr17	34294715	34295715	+	670.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7444.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	42.5	108.5	36.0	30.5	85.5	28.0
Merged-chr2-32080645-2	chr2	32080145	32081145	+	670.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_151493, intron 2 of 5)	intron (NR_151493, intron 2 of 5)	3060.0	NM_175511	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164864080-2	chr2	164863580	164864580	+	670.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-6372.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	6.0	13.5	5.5	3.5	15.0	2.0
Merged-chr7-44589333-2	chr7	44588831	44589831	+	670.833374	f0_balb.idr|f0_c57.idr	Intergenic	CpG	-1555.0	NM_008422	16504.0	Mm.40312	NM_008422	ENSMUSG00000062785	Kcnc3	KShIIID|Kcr2-3|Kv3.3	potassium voltage gated channel, Shaw-related subfamily, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-154034874-2	chr1	154034374	154035374	+	670.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	134945.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17867939-3	chr17	17867409	17868409	+	670.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12721.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	57.0	99.0	48.0	24.5	75.5	46.0
Merged-chr2-75779076-2	chr2	75778665	75779665	+	670.791626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-53012.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0.0	5.5	3.5	5.5	0.0	0.5
Merged-chr2-93913799-3	chr2	93913312	93914312	+	670.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43288.0	NM_001145034	620695.0	Mm.482106	NM_001145034	ENSMUSG00000087006	Gm13889	Ag2	predicted gene 13889	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85641105-2	chr12	85640605	85641605	+	670.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41087.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-52064480-2	chr16	52063980	52064980	+	670.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	32931.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-58902117-2	chr6	58901617	58902617	+	670.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361966, intron 23 of 25)	MIR|SINE|MIR	5009.0	NM_021432	58243.0	Mm.389747	NM_021432	ENSMUSG00000055430	Nap1l5	1110020M21Rik	nucleosome assembly protein 1-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59729739-2	chr9	59729239	59730239	+	670.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	20910.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62521890-2	chr4	62521390	62522390	+	670.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1827.0	NM_008525	17025.0	Mm.6988	NM_008525	ENSMUSG00000028393	Alad	ALADH|Lv	aminolevulinate, delta-, dehydratase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81388688-2	chr10	81388188	81389188	+	670.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133964)	TTS (NM_133964)	2341.0	NR_105878	102466763.0		NR_105878	ENSMUSG00000098811	Mir6913	Gm27788|mmu-mir-6913	microRNA 6913	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98155746-2	chr7	98155246	98156246	+	670.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_007602, intron 2 of 12)	intron (NM_007602, intron 2 of 12)	6596.0	NM_001301250	12337.0	Mm.326847	NM_007602	ENSMUSG00000035547	Capn5	nCL-3	calpain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107604180-3	chr9	107603624	107604624	+	670.666687	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_111986, exon 3 of 18)	non-coding (NR_111986, exon 3 of 18)	1278.0	NM_009153	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	2.0	9.5	0.0	1.5	6.5	0.0
Merged-chr9-110661938-2	chr9	110661438	110662438	+	670.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	CT-rich|Low_complexity|Low_complexity	5435.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	2.5	1.0	1.0	0.0	0.0	0.5
Merged-chr8-11297534-3	chr8	11297034	11298034	+	670.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009931, intron 1 of 51)	intron (NM_009931, intron 1 of 51)	-15271.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-80638079-3	chr1	80637588	80638588	+	670.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 2 of 55)	intron (NM_175291, intron 2 of 55)	27264.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118178928-2	chr11	118178428	118179428	+	670.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 9 of 12)	intron (NM_001112700, intron 9 of 12)	33814.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84654818-2	chr8	84654318	84655318	+	670.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	8034.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-29814082-4	chr16	29813547	29814547	+	670.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	165077.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	2.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-101159552-3	chr9	101159045	101160045	+	670.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161362, intron 6 of 13)	intron (NM_001161362, intron 6 of 13)	39528.0	NM_172144	235542.0	Mm.335386	NM_172144	ENSMUSG00000043154	Ppp2r3a	3222402P14Rik|A730042E07	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81380122-2	chr10	81379627	81380627	+	670.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1757.0	NM_019757	56371.0	Mm.24202	NM_019757	ENSMUSG00000020235	Fzr1	AW108046|Cdh1|FZR|FZR2|Fyr|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94094463-3	chr13	94093937	94094937	+	670.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 1 of 3)	intron (NM_172589, intron 1 of 3)	36641.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17788197-4	chr6	17787691	17788691	+	670.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	RMER1C|Other|Other	39021.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75101655-4	chr8	75101152	75102152	+	670.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7857.0	NM_001302540	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	1.0	3.0	0.5	3.5	1.0	6.0
Merged-chr3-149110268-3	chr3	149109782	149110782	+	670.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-155647.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	4.0	0.0	2.0	7.5	0.0	3.0
Merged-chr11-73110121-3	chr11	73109681	73110681	+	670.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361245, intron 2 of 30)	intron (NM_001361245, intron 2 of 30)	19586.0	NM_172944	16407.0	Mm.96	NM_008399	ENSMUSG00000005947	Itgae	A530055J10|CD103|aM290|alpha-E1|alpha-M290	integrin alpha E, epithelial-associated	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr11-106961676-4	chr11	106961231	106962231	+	670.549988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37794.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	55.5	41.0	50.0	44.5	64.5	33.0
Merged-chr15-55280813-2	chr15	55280313	55281313	+	670.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26937.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-33434375-2	chr5	33433868	33434868	+	670.5	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011320)	promoter-TSS (NM_011320)	-278.0	NM_011320	672284.0		NM_011320	ENSMUSG00000029112	Nkx1-1	Nkx-1.1|Sax2	NK1 homeobox 1	protein-coding	0.0	0.0	3.0	0.0	0.0	1.0
Merged-chr7-141316127-2	chr7	141315627	141316627	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282072, intron 6 of 12)	intron (NM_001282072, intron 6 of 12)	11598.0	NM_016874	54006.0	Mm.28392	NM_016874	ENSMUSG00000058886	Deaf1	AU042387|C230009B13Rik|NUDR	DEAF1, transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-65114981-2	chr1	65114481	65115481	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175293, intron 5 of 7)	ID_B1|SINE|B4	8233.0	NM_175293	98303.0	Mm.348057	NM_175293	ENSMUSG00000044816	D630023F18Rik	AI314969	RIKEN cDNA D630023F18 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70845718-2	chr11	70845218	70846218	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291141, intron 1 of 16)	intron (NM_001291141, intron 1 of 16)	957.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	1.5	42.5	26.5	18.5	15.5	13.0
Merged-chr6-113172756-2	chr6	113172256	113173256	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177763, intron 3 of 3)	intron (NM_177763, intron 3 of 3)	22628.0	NM_177763	269788.0	Mm.37943	NM_177763	ENSMUSG00000042873	Lhfpl4	1190004M23Rik|AI604880|B230384L07|mKIAA4027	lipoma HMGIC fusion partner-like protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95529550-2	chr3	95529050	95530050	+	670.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001267695, exon 2 of 8)	exon (NM_001267695, exon 2 of 8)	2764.0	NM_001267695	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	8.0	16.0	17.0	12.0	25.0	19.0
Merged-chr17-45801475-2	chr17	45800959	45801959	+	670.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	66953.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	5.5	0.0	2.5	0.0	0.0	0.0
Merged-chr6-125436861-4	chr6	125436342	125437342	+	670.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-56338.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0.0	0.0	0.5	0.0	0.0	4.0
Merged-chr2-24353269-2	chr2	24352769	24353769	+	670.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7898.0	NM_001039701	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120713965-2	chr8	120713465	120714465	+	670.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-22393.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102623349-2	chr4	102622849	102623849	+	670.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33506.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.5	0.5	2.0	5.5	6.0	2.0
Merged-chr11-5739160-2	chr11	5738660	5739660	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361588, intron 1 of 6)	intron (NM_001361588, intron 1 of 6)	2016.0	NM_001361590	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102577347-2	chr11	102576847	102577847	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040286, intron 2 of 2)	intron (NR_040286, intron 2 of 2)	1772.0	NR_040286	100040792.0	Mm.277966	NR_040286	ENSMUSG00000078640	Gm11627	-	predicted gene 11627	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134108000-2	chr1	134107500	134108500	+	670.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3242.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-127239528-2	chr1	127239028	127240028	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	34542.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128380063-2	chr2	128379563	128380563	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	49288.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	11.0	22.5	9.0	11.5	22.5	6.0
Merged-chr11-70565061-2	chr11	70564561	70565561	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 1 of 30)	intron (NM_016713, intron 1 of 30)	2180.0	NM_016713	50932.0	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125604470-2	chr7	125603970	125604970	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021887, intron 1 of 8)	intron (NM_021887, intron 1 of 8)	1041.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	12.5	0.0	7.5	0.0	0.0	0.0
Merged-chr3-90458483-2	chr3	90457984	90458984	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008727, intron 11 of 21)	intron (NM_008727, intron 11 of 21)	7382.0	NM_008727	18160.0	Mm.4627	NM_008727	ENSMUSG00000027931	Npr1	AI893888|GC-A|NPR-A|NPRA|Pndr	natriuretic peptide receptor 1	protein-coding	2.5	0.0	0.5	11.0	1.0	0.0
Merged-chr8-25544299-2	chr8	25543799	25544799	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001079909, intron 2 of 16)	intron (NM_001079909, intron 2 of 16)	11784.0	NR_110510	102633315.0	Mm.437828	NR_110510	ENSMUSG00000086134	Gm16159	-	predicted gene 16159	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38644090-2	chr6	38643590	38644590	+	670.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-6851.0	NM_001033171	74253.0	Mm.121859	NM_001033171	ENSMUSG00000071537	Klrg2	2310020F24Rik	killer cell lectin-like receptor subfamily G, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81324741-2	chr7	81324241	81325241	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 18 of 21)	intron (NM_008803, intron 18 of 21)	20493.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50392867-2	chr17	50392387	50393387	+	670.5	f0_c57.idr|f1_balb.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-99267.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	20.0	55.0	33.0	27.0	44.0	35.5
Merged-chr4-134188133-2	chr4	134187686	134188686	+	670.5	f0_balb.idr|f1_balb.idr	Intergenic	ID_B1|SINE|B4	-1101.0	NM_144527	70012.0	Mm.26542	NM_144527	ENSMUSG00000037443	Cep85	2410030J07Rik|AI173272|AI173504|Ccdc21	centrosomal protein 85	protein-coding	10.0	7.5	7.0	2.0	28.5	22.5
Merged-chr6-124489941-2	chr6	124489441	124490441	+	670.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3172.0	NM_181344	232371.0	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20927968-2	chr11	20927468	20928468	+	670.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96860.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	0.0	0.0	3.5	2.5	2.0	1.5
Merged-chr10-117870691-2	chr10	117870191	117871191	+	670.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24717.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90269443-2	chr3	90268943	90269943	+	670.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105979)	promoter-TSS (NR_105979)	-706.0	NR_105979	102465612.0		NR_105979	ENSMUSG00000099199	Mir7012	Gm27370|mmu-mir-7012	microRNA 7012	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117221770-2	chr10	117221270	117222270	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026570, intron 2 of 6)	intron (NM_026570, intron 2 of 6)	2737.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12469645-2	chr19	12469145	12470145	+	670.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172442, exon 9 of 9)	exon (NM_172442, exon 9 of 9)	8866.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	0.0	1.0	4.0	2.5	13.5	13.0
Merged-chr2-166581893-2	chr2	166581393	166582393	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 27 of 39)	intron (NM_177782, intron 27 of 39)	17371.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115247361-2	chr11	115246859	115247859	+	670.5	f0_balb.idr|f1_balb.idr	TTS (NM_001033393)	TTS (NM_001033393)	19884.0	NM_010350	14813.0	Mm.39090	NM_010350	ENSMUSG00000020734	Grin2c	GluN2C|NMDAR2C|NR2C	glutamate receptor, ionotropic, NMDA2C (epsilon 3)	protein-coding	5.0	0.0	2.5	0.0	0.0	1.0
Merged-chr6-17726269-2	chr6	17725758	17726758	+	670.5	f0_balb.idr|f1_balb.idr	intron (NM_001289624, intron 1 of 15)	intron (NM_001289624, intron 1 of 15)	-17334.0	NM_001289627	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	9.0	8.5	14.0	10.5	25.5	4.0
Merged-chr4-95687759-2	chr4	95687259	95688259	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029347, intron 5 of 10)	intron (NM_029347, intron 5 of 10)	108338.0	NM_029347	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92606188-2	chr5	92605688	92606688	+	670.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175096, exon 2 of 2)	3' UTR (NM_175096, exon 2 of 2)	3137.0	NM_175096	52331.0	Mm.21965	NM_175096	ENSMUSG00000047963	Stbd1	D530019K15Rik|D5Ertd593e	starch binding domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41192128-2	chr4	41191628	41192628	+	670.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026275, exon 5 of 5)	3' UTR (NM_026275, exon 5 of 5)	56107.0	NM_026275	67615.0	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	0.0	0.5	0.5	0.0	0.0	0.0
Merged-chr11-97176926-2	chr11	97176426	97177426	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008379, intron 8 of 21)	intron (NM_008379, intron 8 of 21)	10966.0	NM_008379	16211.0	Mm.251013	NM_008379	ENSMUSG00000001440	Kpnb1	AA409963|IPOB|Impnb	karyopherin (importin) beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30904337-2	chr7	30903837	30904837	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346084, intron 8 of 11)	intron (NM_001346084, intron 8 of 11)	9984.0	NM_001346089	17136.0	Mm.241355	NM_010758	ENSMUSG00000036634	Mag	Gma|siglec-4a	myelin-associated glycoprotein	protein-coding	0.0	1.0	0.0	0.0	1.0	0.0
Merged-chr12-33305235-2	chr12	33304735	33305735	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033436, intron 1 of 7)	intron (NM_001033436, intron 1 of 7)	2720.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr8-104590129-2	chr8	104589629	104590629	+	670.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-1339.0	NM_001024606	382051.0	Mm.290750	NM_001024606	ENSMUSG00000048371	Pdp2	4833426J09Rik|Gm1705|mKIAA1348	pyruvate dehyrogenase phosphatase catalytic subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-46162221-2	chr13	46161721	46162721	+	670.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111500.0	NM_001005422	380842.0	Mm.188108	NM_001005422	ENSMUSG00000063529	Stmnd1	Gm1574	stathmin domain containing 1	protein-coding	0.0	3.5	0.0	4.0	4.0	1.0
Merged-chr6-72825208-2	chr6	72824708	72825708	+	670.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36163.0	NM_009332	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	0.0	1.5	0.0	0.5	0.0	2.5
Merged-chr3-90073851-2	chr3	90073351	90074351	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022314, intron 2 of 8)	intron (NM_022314, intron 2 of 8)	1200.0	NM_022314	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	0.0	0.0	0.0	5.5	1.5	1.0
Merged-chr6-129494662-2	chr6	129494162	129495162	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138648, intron 4 of 7)	MT2A|LTR|ERVL	12503.0	NM_138648	108078.0	Mm.293626	NM_138648	ENSMUSG00000030162	Olr1	LOX-1|SR-EI|Scare1	oxidized low density lipoprotein (lectin-like) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-125089979-3	chr4	125089489	125090489	+	670.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151472, intron 3 of 7)	intron (NR_151472, intron 3 of 7)	4855.0	NR_151472	70088.0	Mm.291214	NM_027310	ENSMUSG00000028863	Meaf6	2310005N01Rik|2810036M01Rik	MYST/Esa1-associated factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107206717-2	chr11	107206217	107207217	+	670.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-17336.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100432070-2	chr7	100431772	100432772	+	670.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001017985, exon 23 of 33)	exon (NM_001017985, exon 23 of 33)	-40719.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	9.5	27.5	14.5	7.0	18.5	21.0
Merged-chr8-106964860-1	chr8	106964360	106965360	+	670.333313	f0_balb.idr	intron (NM_009229, intron 1 of 6)	intron (NM_009229, intron 1 of 6)	29110.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-37042916-2	chr11	37042416	37043416	+	670.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98675.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78560601-2	chr11	78560101	78561101	+	670.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9866.0	NM_133706	69071.0	Mm.29431	NM_133706	ENSMUSG00000037278	Tmem97	1810014L12Rik|AI115531|AL022956|D11Bhm182e	transmembrane protein 97	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-21986977-2	chr6	21986477	21987477	+	670.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081351, exon 1 of 22)	exon (NM_001081351, exon 1 of 22)	1067.0	NM_001081351	214642.0	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122743625-3	chr2	122743129	122744129	+	670.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019788, intron 2 of 4)	intron (NM_019788, intron 2 of 4)	5124.0	NM_019788	18457.0	Mm.268921	NM_019788	ENSMUSG00000005804	Bloc1s6	BLOC-1|Pldn|Stx13bp1|pa	biogenesis of lysosomal organelles complex-1, subunit 6, pallidin	protein-coding	1.0	8.0	6.0	3.0	2.0	10.5
Merged-chr1-142894335-3	chr1	142893828	142894828	+	670.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-746369.0	NM_020025	26878.0	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-53130615-3	chr9	53130114	53131114	+	670.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029936, intron 16 of 17)	intron (NM_029936, intron 16 of 17)	117498.0	NM_029936	77591.0	Mm.133560	NM_029936	ENSMUSG00000053289	Ddx10	4632415A01Rik|AI646054	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73678243-3	chr12	73677781	73678781	+	670.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	93485.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72199005-4	chr5	72198516	72199516	+	670.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-4313.0	NR_003966	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105927213-3	chr3	105926716	105927716	+	670.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033780, exon 4 of 6)	exon (NM_001033780, exon 4 of 6)	5448.0	NM_001033780	433638.0	Mm.239081	NM_001033780	ENSMUSG00000074342	I830077J02Rik	-	RIKEN cDNA I830077J02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95677751-2	chr3	95677251	95678251	+	670.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301705, intron 15 of 17)	intron (NM_001301705, intron 15 of 17)	10166.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80427180-2	chr10	80426680	80427680	+	670.275024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164153, intron 3 of 18)	intron (NM_001164153, intron 3 of 18)	6473.0	NM_001164150	21423.0	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134385258-2	chr5	134384758	134385758	+	670.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081462, intron 15 of 29)	intron (NM_001081462, intron 15 of 29)	58804.0	NR_039544	100628570.0		NR_039544	ENSMUSG00000093311	Mir3965	mmu-mir-3965|mu-mir-3965	microRNA 3965	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-135957933-2	chr2	135957433	135958433	+	670.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355156, intron 16 of 37)	intron (NM_001355156, intron 16 of 37)	-94406.0	NM_001356548	76161.0	Mm.41638	NM_029530	ENSMUSG00000027270	Lamp5	3110035N03Rik|6330527O06Rik|BAD-LAMP|LAMP-5	lysosomal-associated membrane protein family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52629897-2	chr13	52629397	52630397	+	670.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 7 of 13)	intron (NM_011518, intron 7 of 13)	33015.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13048839-3	chr10	13048350	13049350	+	670.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	40400.0	NM_175102	66125.0	Mm.29743	NM_175102	ENSMUSG00000078348	Sf3b5	10kDa|1110005L13Rik|AU043053|Sf3b10	splicing factor 3b, subunit 5	protein-coding	1.5	6.0	2.5	4.0	10.5	0.0
Merged-chr13-81761936-3	chr13	81761425	81762425	+	670.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21322.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132304208-3	chr4	132303707	132304707	+	670.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081651)	promoter-TSS (NM_001081651)	-851.0	NM_001081651	242681.0	Mm.331927	NM_001081651	ENSMUSG00000089687	Rab42	9530096D07Rik|Rab42-ps	RAB42, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-61389657-3	chr3	61389163	61390163	+	670.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25156.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-9748050-3	chr15	9747540	9748540	+	670.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305042, intron 1 of 36)	intron (NM_001305042, intron 1 of 36)	828.0	NM_177123	320277.0	Mm.127822	NM_177123	ENSMUSG00000072663	Spef2	C230086A09Rik	sperm flagellar 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111920227-3	chr12	111919734	111920734	+	670.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12179.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139126065-3	chr7	139125567	139126567	+	670.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021302, intron 2 of 11)	intron (NM_021302, intron 2 of 11)	40066.0	NM_011993	26757.0	Mm.250414	NM_011993	ENSMUSG00000025478	Dpysl4	AI173505|CRMP-3|Crmp3|DPY4|Drp-4|Ulip4	dihydropyrimidinase-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96314962-3	chr11	96314446	96315446	+	670.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2219.0	NR_029784	723893.0		NR_029784	ENSMUSG00000065519	Mir10a	Mirn10a|miR-10a|mmu-mir-10a	microRNA 10a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44925708-2	chr7	44925208	44926208	+	670.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077264, intron 1 of 22)	B3|SINE|B2	3782.0	NM_007458	11771.0	Mm.6877	NM_007458	ENSMUSG00000060279	Ap2a1	Adtaa	adaptor-related protein complex 2, alpha 1 subunit	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr3-40952512-2	chr3	40952012	40953012	+	670.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040399, intron 1 of 9)	intron (NM_001040399, intron 1 of 9)	1881.0	NM_001040399	214048.0	Mm.46782	NM_027663	ENSMUSG00000025762	Larp1b	1700108L22Rik|4933421B21Rik|AA690246|Larp2	La ribonucleoprotein domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-138906403-2	chr3	138905922	138906922	+	670.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	164214.0	NM_019571	56224.0	Mm.31927	NM_019571	ENSMUSG00000028152	Tspan5	2810455A09Rik|4930505M03Rik|NET-4|Tm4sf9	tetraspanin 5	protein-coding	1.5	5.5	2.0	1.5	7.5	1.5
Merged-chr9-21506844-2	chr9	21506344	21507344	+	670.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001324510)	TTS (NM_001324510)	3050.0	NM_001324510	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-112752729-2	chr6	112752236	112753236	+	670.125	f0_balb.idr|f0_c57.idr	intron (NM_080448, intron 12 of 21)	intron (NM_080448, intron 12 of 21)	-56066.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108284592-2	chr3	108284092	108285092	+	670.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019972, intron 1 of 19)	GC_rich|Low_complexity|Low_complexity	528.0	NM_019972	20661.0	Mm.157119	NM_019972	ENSMUSG00000068747	Sort1	2900053A11Rik|AI852375|Ntr3|Ntsr3	sortilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7039038-2	chr10	7038538	7039538	+	670.083374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001302795)	TTS (NM_001302795)	-15853.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0.0	1.0	1.5	0.5	19.0	6.5
Merged-chr11-97311220-2	chr11	97310713	97311713	+	670.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	(GGGTG)n|Simple_repeat|Simple_repeat	-4503.0	NM_025927	67036.0	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	7.0	1.0	2.0	7.0	1.0	0.0
Merged-chr12-105757926-2	chr12	105757426	105758426	+	670.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_030187, intron 12 of 17)	intron (NM_030187, intron 12 of 17)	-26771.0	NM_011112	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	3.0	4.0	0.0	1.0	0.0	0.0
Merged-chr15-90654434-2	chr15	90653938	90654938	+	670.083374	f0_balb.idr|f1_balb.idr	intron (NM_001033851, intron 1 of 3)	intron (NM_001033851, intron 1 of 3)	24950.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	0.0	2.0	0.0	0.0	1.0	0.0
Merged-chr8-120281575-2	chr8	120281075	120282075	+	670.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53345.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118142596-2	chr11	118142096	118143096	+	670.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13377.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55650536-2	chr19	55650036	55651036	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	51668.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	7.0	40.5	27.5	5.5	37.5	25.0
Merged-chr2-181277010-2	chr2	181276502	181277502	+	670.0	f0_balb.idr|f0_c57.idr	intron (NM_198169, intron 2 of 9)	intron (NM_198169, intron 2 of 9)	10964.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180774286-2	chr1	180773786	180774786	+	670.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	39319.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64058393-3	chr15	64057933	64058933	+	670.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	1331.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	2.5	11.5	4.5	2.0	1.5	3.5
Merged-chr8-51525706-2	chr8	51525206	51526206	+	670.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR41|LTR|ERV1	-830905.0	NR_151738	330767.0	Mm.246790	NR_151738	ENSMUSG00000110013	1190028D05Rik	-	RIKEN cDNA 1190028D05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89009126-2	chr6	89008626	89009626	+	670.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86984.0	NR_134978	232217.0	Mm.281744	NM_175017	ENSMUSG00000055403	4933427D06Rik	-	RIKEN cDNA 4933427D06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-142097030-1	chr4	142096530	142097530	+	670.0	f1_balb.idr	Intergenic	Intergenic	-12726.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	14.0	14.5	17.5	10.0	38.0	17.0
Merged-chr15-64128542-2	chr15	64128042	64129042	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 17 of 28)	intron (NM_001276461, intron 17 of 28)	-68094.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0	4.0	1.5	0.0	4.0	1.5
Merged-chr17-33950427-1	chr17	33949927	33950927	+	670.0	f1_c57bl6.idr	TTS (NM_020603)	TTS (NM_020603)	1061.0	NM_019420	54218.0	Mm.11132	NM_019420	ENSMUSG00000067370	B3galt4	Gal-T2|Galt2	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4	protein-coding	5.5	28.5	23.0	11.0	55.0	34.0
Merged-chr13-49355647-1	chr13	49355147	49356147	+	670.0	f0_balb.idr	intron (NM_001039179, intron 1 of 6)	intron (NM_001039179, intron 1 of 6)	14098.0	NM_001039180	76895.0	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	BICD cargo adaptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-56971594-2	chr1	56971094	56972094	+	670.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139146)	promoter-TSS (NM_139146)	125.0	NR_024326	329160.0	Mm.419039	NR_024325	ENSMUSG00000087022	9130024F11Rik	B530002L08|EG329160	RIKEN cDNA 9130024F11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91071134-2	chr16	91070634	91071634	+	670.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1989.0	NM_028905	74387.0	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85481607-1	chr1	85481107	85482107	+	670.0	f1_balb.idr	Intergenic	Intergenic	117203.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128489788-2	chr8	128489288	128490288	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358959, intron 12 of 16)	intron (NM_001358959, intron 12 of 16)	130547.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	4.5	7.0	8.5	0.5	10.0	5.0
Merged-chr4-117872723-1	chr4	117872223	117873223	+	670.0	f1_balb.idr	promoter-TSS (NM_001034876)	promoter-TSS (NM_001034876)	-253.0	NM_001034876	381546.0	Mm.440118	NM_001034876	ENSMUSG00000078588	Ccdc24	Gm1028	coiled-coil domain containing 24	protein-coding	0.0	0.0	0.0	0.0	3.0	0.5
Merged-chr4-40953715-2	chr4	40953215	40954215	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029814, intron 5 of 7)	B3A|SINE|B2	5162.0	NM_029814	76959.0	Mm.212763	NM_029814	ENSMUSG00000028419	Chmp5	2210412K09Rik|AW545668	charged multivesicular body protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-142712325-2	chr6	142711825	142712825	+	670.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	-10051.0	NM_001310143	20928.0	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121551657-2	chr10	121551157	121552157	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019786, intron 18 of 20)	intron (NM_019786, intron 18 of 20)	35137.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	3.0	2.0	2.5	0.0	4.0	1.0
Merged-chr13-107953940-1	chr13	107953440	107954440	+	670.0	f0_balb.idr	Intergenic	Intergenic	-63876.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	36.5	59.5	49.0	44.5	50.0	63.0
Merged-chr6-124732041-1	chr6	124731541	124732541	+	670.0	f0_balb.idr	intron (NM_001077705, intron 3 of 15)	intron (NM_001077705, intron 3 of 15)	1113.0	NM_013545	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145293296-2	chr4	145292796	145293796	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009401, intron 4 of 12)	intron (NM_009401, intron 4 of 12)	21851.0	NM_009401	21941.0	Mm.12810	NM_009401	ENSMUSG00000028602	Tnfrsf8	Cd30|D1S166E|Ki|Ki-1	tumor necrosis factor receptor superfamily, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25398122-2	chr17	25397622	25398622	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163691, intron 2 of 34)	intron (NM_001163691, intron 2 of 34)	27569.0	NM_012034	26945.0	Mm.180108	NM_012034	ENSMUSG00000033200	Tpsg1	Prss31|Tmt	tryptase gamma 1	protein-coding	0.0	0.0	0.0	0.0	1.5	0.0
Merged-chr15-25825903-1	chr15	25825403	25826403	+	670.0	f0_balb.idr	Intergenic	Intergenic	-17395.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-16242763-1	chr14	16242263	16243263	+	670.0	f1_c57bl6.idr	exon (NM_001359883, exon 2 of 3)	exon (NM_001359883, exon 2 of 3)	568.0	NM_001359883	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	97.0	278.5	308.0	99.0	230.5	228.5
Merged-chr3-84063571-2	chr3	84063071	84064071	+	670.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23410.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-23043963-1	chr19	23043463	23044463	+	670.0	f1_c57bl6.idr	Intergenic	Intergenic	-97263.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	2.5	2.0	2.5	0.0	4.5	1.5
Merged-chr12-51868978-2	chr12	51868506	51869506	+	670.0	f0_balb.idr|f1_balb.idr	Intergenic	RMER17C2|LTR|ERVK	-39470.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	3.0	4.0	1.5	5.5	9.5	9.0
Merged-chr12-26315085-1	chr12	26314585	26315585	+	670.0	f0_balb.idr	intron (NM_080563, intron 7 of 8)	intron (NM_080563, intron 7 of 8)	-31625.0	NR_130981	75243.0	Mm.444753	NR_130981	ENSMUSG00000114048	4930549C15Rik	-	RIKEN cDNA 4930549C15 gene	ncRNA	7.0	6.0	2.5	0.5	18.5	3.0
Merged-chr19-29438583-2	chr19	29438083	29439083	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 3 of 5)	B4A|SINE|B4	27664.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8945643-1	chr11	8945143	8946143	+	670.0	f1_balb.idr	Intergenic	Intergenic	65548.0	NM_001303610	15574.0	Mm.42201	NM_008316	ENSMUSG00000020413	Hus1	-	HUS1 checkpoint clamp component	protein-coding	1.0	1.0	0.0	0.0	1.0	0.5
Merged-chr2-6743367-2	chr2	6742867	6743867	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 3 of 15)	intron (NM_001110232, intron 3 of 15)	-21705.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141282906-2	chr7	141282406	141283406	+	670.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3773.0	NM_001309439	20287.0	Mm.4723	NM_011328	ENSMUSG00000038580	Sct	-	secretin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101940737-2	chr5	101940237	101941237	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 13 of 66)	intron (NM_172882, intron 13 of 66)	129184.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85323893-1	chr1	85323393	85324393	+	670.0	f1_balb.idr	Intergenic	Intergenic	-53327.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136525161-2	chr1	136524661	136525661	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001287179, intron 26 of 28)	intron (NM_001287179, intron 26 of 28)	57313.0	NM_001287179	381293.0	Mm.458468	NM_001081258	ENSMUSG00000041498	Kif14	D1Ertd367e|E130203M01	kinesin family member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44414127-2	chr19	44413627	44414627	+	670.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-6418.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-103848525-2	chr13	103848025	103849025	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005868, intron 15 of 26)	intron (NM_001005868, intron 15 of 26)	72061.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-15048285-2	chr2	15047785	15048785	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001165943, intron 1 of 10)	B1_Mus2|SINE|Alu	1027.0	NM_001165942	74455.0	Mm.478923	NM_028950	ENSMUSG00000026707	Nsun6	4933403D21Rik|4933414E04Rik|NOPD1	NOL1/NOP2/Sun domain family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135683708-2	chr1	135683208	135684208	+	670.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-36355.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26350797-1	chr8	26350297	26351297	+	670.0	f0_balb.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	192628.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77606589-2	chr18	77606089	77607089	+	670.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41453.0	NM_001164504	225743.0	Mm.23293	NM_001164504	ENSMUSG00000025427	Rnf165	2900024M11Rik|AI427432|Akd2|Ark2c|G630064H08Rik|Gm96	ring finger protein 165	protein-coding	0.0	8.0	0.0	1.5	0.0	0.5
Merged-chr14-17658557-2	chr14	17658057	17659057	+	670.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2403.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120170140-2	chr2	120169640	120170640	+	670.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177845, exon 18 of 20)	exon (NM_177845, exon 18 of 20)	-15565.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	0.0	0.0	0.5	0.0	3.0	0.0
Merged-chr1-74429337-2	chr1	74428837	74429837	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009509, intron 17 of 19)	intron (NM_009509, intron 17 of 19)	19953.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37323117-3	chr10	37322609	37323609	+	670.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-184183.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-27677338-1	chr8	27676838	27677838	+	670.0	f0_balb.idr	Intergenic	B2_Mm2|SINE|B2	229668.0	NM_027618	70952.0	Mm.158160	NM_026256	ENSMUSG00000063932	Poteg	4921537P18Rik|4930456F22Rik|Gsarp1|Gsarp2	POTE ankyrin domain family, member G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50937295-2	chr6	50936801	50937801	+	670.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161186.0	NR_045984	319981.0	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	6.5	3.5	0.0	13.0	4.5	0.0
Merged-chr1-171109982-2	chr1	171109477	171110477	+	670.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11684.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	0.0	0.5	1.0	2.5	2.0	3.5
Merged-chr17-32090820-2	chr17	32090320	32091320	+	670.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027316, exon 1 of 9)	non-coding (NR_027316, exon 1 of 9)	603.0	NR_027316	435518.0	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123458993-2	chr5	123458493	123459493	+	670.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23108.0	NM_029594	76399.0	Mm.75049	NM_029594	ENSMUSG00000029437	Il31	1700013B14Rik	interleukin 31	protein-coding	0.0	1.5	0.5	0.0	0.0	0.0
Merged-chr8-57463482-2	chr8	57462982	57463982	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009136, intron 1 of 2)	intron (NM_009136, intron 1 of 2)	7559.0	NM_009136	20284.0	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3620404-2	chr8	3619904	3620904	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026156, intron 1 of 18)	intron (NM_026156, intron 1 of 18)	892.0	NM_026156	67439.0	Mm.23739	NM_026156	ENSMUSG00000019470	Xab2	0610041O14Rik|AV025587	XPA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-64963909-2	chr18	64963401	64964401	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	-59626.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	19.5	3.0	13.5	0.0	9.0	2.5
Merged-chr2-90467496-2	chr2	90466995	90467995	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 5 of 23)	MTB_Mm|LTR|ERVL-MaLR	11679.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-93053736-2	chr9	93053236	93054236	+	670.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-48003.0	NR_040756	78349.0	Mm.52612	NR_040756	ENSMUSG00000100294	1700034K08Rik	-	RIKEN cDNA 1700034K08 gene	ncRNA	3.5	0.0	0.0	4.0	3.5	0.0
Merged-chr6-148252936-3	chr6	148252441	148253441	+	670.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198967, intron 13 of 19)	intron (NM_198967, intron 13 of 19)	-40567.0	NM_001286560	67456.0	Mm.59812	NM_026168	ENSMUSG00000030304	Ergic2	1200009B18Rik|4930572C01Rik|AA408438|Ptx1	ERGIC and golgi 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26490825-2	chr2	26490325	26491325	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 2 of 33)	intron (NM_008714, intron 2 of 33)	12997.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-153569389-2	chr3	153568889	153569889	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 1 of 4)	intron (NM_011372, intron 1 of 4)	155744.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122667134-2	chr8	122666625	122667625	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009824, intron 1 of 11)	intron (NM_009824, intron 1 of 11)	11050.0	NM_001109873	12398.0	Mm.194339	NM_009824	ENSMUSG00000006362	Cbfa2t3	A630044F12Rik|AI465270|AW229127|Cbfa2t3h|ETO-2|Eto2|MTGR2	core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	protein-coding	0.0	0.0	1.5	1.0	0.0	0.0
Merged-chr5-124094949-2	chr5	124094449	124095449	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019875, intron 1 of 11)	intron (NM_019875, intron 1 of 11)	849.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164417395-2	chr2	164416895	164417895	+	670.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12235.0	NM_001252563	17183.0	Mm.29428	NM_013592	ENSMUSG00000016995	Matn4	matrilin-4	matrilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr16-59602060-1	chr16	59601560	59602560	+	670.0	f1_c57bl6.idr	Intergenic	Intergenic	-34885.0	NR_040564	75145.0	Mm.399348	NR_040564		4930547E14Rik	-	RIKEN cDNA 4930547E14 gene	ncRNA	0.0	0.0	0.0	3.0	0.0	7.5
Merged-chr14-70579574-1	chr14	70579074	70580074	+	670.0	f1_c57bl6.idr	exon (NM_001360475, exon 3 of 3)	exon (NM_001360475, exon 3 of 3)	1475.0	NM_001360474	213484.0	Mm.34191	NM_153136	ENSMUSG00000045211	Nudt18	BC036718	nudix (nucleoside diphosphate linked moiety X)-type motif 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86561325-2	chr11	86560825	86561825	+	670.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001199047, exon 7 of 9)	exon (NM_001199047, exon 7 of 9)	16334.0	NM_001199046	56427.0	Mm.383207	NM_019756	ENSMUSG00000020513	Tubd1	4930550G19Rik|Tubd	tubulin, delta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4235790-2	chr12	4235290	4236290	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204912, intron 1 of 1)	MTD|LTR|ERVL-MaLR	1763.0	NM_001204912	69709.0	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4236173-1	chr8	4235673	4236673	+	670.0	f1_c57bl6.idr	3' UTR (NM_028175, exon 3 of 3)	3' UTR (NM_028175, exon 3 of 3)	-2567.0	NM_011944	26400.0	Mm.3906	NM_011944	ENSMUSG00000002948	Map2k7	5930412N11Rik|JNKK 2|Jnkk2|MAPKK 7|MEK 7|Mapkk7|Mek7|Mkk7|Prkmk7|sek2	mitogen-activated protein kinase kinase 7	protein-coding	11.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59599683-2	chr15	59599166	59600166	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 6 of 6)	L2b|LINE|L2	-48988.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	36.5	46.0	25.5	3.5	9.5	18.0
Merged-chr1-14505094-3	chr1	14504566	14505566	+	669.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-194867.0	NM_010164	14048.0	Mm.250185	NM_010164	ENSMUSG00000025932	Eya1	bor	EYA transcriptional coactivator and phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105154001-3	chr5	105153485	105154485	+	669.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-14399.0	NM_001359080	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	1.5	3.0	2.0	0.5	2.5	0.0
Merged-chr16-38120728-4	chr16	38120205	38121205	+	669.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 1 of 11)	intron (NM_001347232, intron 1 of 11)	-31445.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	0.0	4.0	1.5	0.0	1.0	5.5
Merged-chr7-100537622-3	chr7	100537086	100538086	+	669.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183270, intron 1 of 1)	intron (NM_183270, intron 1 of 1)	486.0	NM_183270	68185.0	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	76.5	122.5	96.5	99.0	201.0	188.0
Merged-chr11-83040522-2	chr11	83040022	83041022	+	669.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073523)	promoter-TSS (NR_073523)	10.0	NM_001355513	237887.0	Mm.341645	NM_181542	ENSMUSG00000072621	Slfn10-ps	Slfn10|mFLJ00257	schlafen 10, pseudogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191316866-2	chr1	191316366	191317366	+	669.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025424, intron 1 of 3)	intron (NM_025424, intron 1 of 3)	1252.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47331927-3	chr17	47331415	47332415	+	669.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 14 of 19)	MTD|LTR|ERVL-MaLR	-36972.0	NM_001146212	64657.0	Mm.216250	NM_183086	ENSMUSG00000034729	Mrps10	1110038B19Rik|AW743084|Rpms10	mitochondrial ribosomal protein S10	protein-coding	4.5	9.0	10.5	0.0	17.0	6.0
Merged-chr16-94258933-4	chr16	94258432	94259432	+	669.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 5 of 10)	intron (NM_001360045, intron 5 of 10)	31359.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25294647-2	chr12	25294154	25295154	+	669.75	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	165480.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	12.5	5.5	2.5	10.5	4.5	12.5
Merged-chr5-150892206-2	chr5	150891706	150892706	+	669.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER34A1|LTR|ERV1	-60401.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-79202694-2	chr9	79202194	79203194	+	669.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	316608.0	NR_045336	100038575.0	Mm.367838	NR_045336	ENSMUSG00000111765	Gm10635	-	predicted gene 10635	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-5467818-2	chr16	5467318	5468318	+	669.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-211862.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-29230673-4	chr5	29230191	29231191	+	669.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_020295, exon 17 of 17)	3' UTR (NM_020295, exon 17 of 17)	34698.0	NR_110371	56874.0	Mm.87352	NM_021470	ENSMUSG00000029130	Rnf32	1700009J01Rik|2700025B22Rik|4930542N22Rik|Lmbr2	ring finger protein 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127760494-2	chr7	127759994	127760994	+	669.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172748, intron 7 of 10)	intron (NM_172748, intron 7 of 10)	-9321.0	NM_198424	269999.0	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-35726033-2	chr5	35725533	35726533	+	669.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359895, intron 1 of 17)	intron (NM_001359895, intron 1 of 17)	3243.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50601823-3	chr9	50601323	50602323	+	669.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025848, intron 1 of 3)	MTD|LTR|ERVL-MaLR	2026.0	NM_025848	66925.0	Mm.10406	NM_025848	ENSMUSG00000000171	Sdhd	3110001M13Rik|AVLL5809|C78570|PRO19626	succinate dehydrogenase complex, subunit D, integral membrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-9012857-3	chr5	9012364	9013364	+	669.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-15718.0	NM_023733	74114.0	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99135486-3	chr7	99134975	99135975	+	669.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 1 of 14)	intron (NM_178635, intron 1 of 14)	5669.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	13.5	6.5	19.5	14.5	10.5	4.5
Merged-chr2-156352356-3	chr2	156351872	156352872	+	669.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027585, intron 8 of 12)	intron (NM_027585, intron 8 of 12)	-39668.0	NM_020255	19018.0	Mm.389346	NM_020255	ENSMUSG00000046229	Scand1	2310003H23Rik|Leap1|PGC-2|Ppargc2	SCAN domain-containing 1	protein-coding	0.0	4.5	2.5	0.0	0.0	0.0
Merged-chr15-55280464-3	chr15	55279951	55280951	+	669.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27299.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107998200-3	chr3	107997677	107998677	+	669.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-11757.0	NM_008183	14863.0	Mm.440086	NM_008183	ENSMUSG00000040562	Gstm2	Gstb-2|Gstb2	glutathione S-transferase, mu 2	protein-coding	0.0	0.0	1.5	0.0	0.0	1.0
Merged-chr3-145107057-3	chr3	145106555	145107555	+	669.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA7|LINE|L1	-7949.0	NM_178697	229933.0	Mm.331420	NM_178697	ENSMUSG00000036960	Clca2	4732440A06|AI586120|Clca5	chloride channel accessory 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-118737790-2	chr5	118737290	118738290	+	669.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 14 of 30)	intron (NM_001347445, intron 14 of 30)	177071.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.0	0.0	3.0	0.0	0.0	0.0
Merged-chr13-37816474-2	chr13	37815974	37816974	+	669.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-9564.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-85042574-2	chr16	85042100	85043100	+	669.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198823, intron 7 of 17)	intron (NM_001198823, intron 7 of 17)	70389.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	11.5	0.0	0.0	3.0	3.0	1.5
Merged-chr11-54904622-2	chr11	54904122	54905122	+	669.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008161, intron 1 of 4)	MIR3|SINE|MIR	1768.0	NM_008161	14778.0	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-130918787-3	chr1	130918267	130919267	+	669.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7471.0	NM_021380	58181.0	Mm.103794	NM_021380	ENSMUSG00000026416	Il20	Zcyto10	interleukin 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-55203485-3	chr18	55202993	55203993	+	669.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-210902.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	3.5	38.0	3.5	3.5	40.0	4.5
Merged-chr17-35419754-2	chr17	35419316	35420316	+	669.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31B2|LTR|ERVK	-5031.0	NM_023124	15019.0	Mm.486287	NM_023124		H2-Q8	H-2Q8|MMS10-T|Ms10t|Qa-2|Qa-8|Qa8	histocompatibility 2, Q region locus 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29533342-3	chr6	29532860	29533860	+	669.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252382, intron 2 of 8)	B1F|SINE|Alu	4078.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22167218-2	chr8	22166706	22167706	+	669.5	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_011848)	promoter-TSS (NM_011848)	-771.0	NM_011848	23954.0	Mm.41413	NM_011848	ENSMUSG00000031478	Nek3	-	NIMA (never in mitosis gene a)-related expressed kinase 3	protein-coding	6.0	0.0	4.5	0.5	0.5	2.5
Merged-chr18-19294042-2	chr18	19293542	19294542	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB-int|LTR|ERVL-MaLR	708055.0	NM_007882	13507.0	Mm.89935	NM_007882	ENSMUSG00000059898	Dsc3	5430426I24Rik	desmocollin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125067612-2	chr6	125067112	125068112	+	669.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163269)	promoter-TSS (NM_001163269)	-308.0	NM_001163269	381810.0	Mm.333386	NM_001163268	ENSMUSG00000067714	Lpar5	GPR93|Gm1072|Gpr92|LPA5	lysophosphatidic acid receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144280178-1	chr2	144279678	144280678	+	669.5	f0_balb.idr	3' UTR (NM_001289630, exon 5 of 5)	3' UTR (NM_001289630, exon 5 of 5)	9274.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60829219-2	chr11	60828719	60829719	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-1412.0	NM_001172112	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34968526-2	chr17	34968026	34969026	+	669.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010479)	TTS (NM_010479)	3630.0	NM_010479	193740.0	Mm.6388	NM_010479	ENSMUSG00000091971	Hspa1a	Hsp70-3|Hsp70.3|Hsp72|hsp68|hsp70A1	heat shock protein 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71882778-2	chr8	71882278	71883278	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145624, intron 1 of 3)	intron (NM_145624, intron 1 of 3)	710.0	NM_145624	236193.0	Mm.290790	NM_145624	ENSMUSG00000056019	Zfp709	BC021921|GIOT-4|HIT-40	zinc finger protein 709	protein-coding	48.5	30.5	53.0	33.0	31.0	24.5
Merged-chr10-78422809-2	chr10	78422309	78423309	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-2861.0	NM_007793	13014.0	Mm.6095	NM_007793	ENSMUSG00000005054	Cstb	AA960480|Stfb	cystatin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112315680-1	chr5	112315180	112316180	+	669.5	f1_balb.idr	TTS (NM_001326590)	TTS (NM_001326590)	-10689.0	NM_018783	54723.0	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	4.5	3.5	5.5	0.5	0.0	5.5
Merged-chr16-30514509-2	chr16	30514009	30515009	+	669.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172614, exon 10 of 10)	3' UTR (NM_172614, exon 10 of 10)	36069.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	0.0	0.0	2.0	0.0	0.0	4.5
Merged-chr5-99213442-2	chr5	99212942	99213942	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39485.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24428161-2	chr5	24427661	24428661	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009207, intron 2 of 22)	intron (NM_009207, intron 2 of 22)	640.0	NM_001253892	20535.0	Mm.4580	NM_009207	ENSMUSG00000028962	Slc4a2	Ae2|B3RP	solute carrier family 4 (anion exchanger), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27485967-2	chr7	27485467	27486467	+	669.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018820)	promoter-TSS (NM_018820)	-986.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97777293-2	chr7	97776793	97777793	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11248.0	NM_001357365	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31278570-2	chr15	31278070	31279070	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54185.0	NM_146057	223453.0	Mm.222867	NM_146057	ENSMUSG00000039168	Dap	4921531N22Rik|AI789753|AU040360	death-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-45854062-2	chr1	45853562	45854562	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58896.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119962972-3	chr4	119962481	119963481	+	669.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	148303.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	0.5	0.5	3.0	1.0	8.0	2.5
Merged-chr2-35589671-2	chr2	35589171	35590171	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290637, intron 1 of 16)	intron (NM_001290637, intron 1 of 16)	6831.0	NM_001290637	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43663654-2	chr7	43663154	43664154	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B1|LTR|ERVL	-3493.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-61443758-2	chr15	61443258	61444258	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	330693.0	NR_040350	432956.0	Mm.404918	NR_040350	ENSMUSG00000116031	D030024E09Rik	-	RIKEN cDNA D030024E09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98952316-2	chr10	98951816	98952816	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	37164.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83474192-2	chr15	83473692	83474692	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9586.0	NM_001358643	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115245506-2	chr11	115245006	115246006	+	669.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033393, exon 10 of 10)	3' UTR (NM_001033393, exon 10 of 10)	21737.0	NM_010350	14813.0	Mm.39090	NM_010350	ENSMUSG00000020734	Grin2c	GluN2C|NMDAR2C|NR2C	glutamate receptor, ionotropic, NMDA2C (epsilon 3)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79059240-2	chr2	79058740	79059740	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	189562.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-103283232-2	chr4	103282732	103283732	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163494, intron 1 of 7)	intron (NM_001163494, intron 1 of 7)	7631.0	NM_027612	70941.0	Mm.158501	NM_027612	ENSMUSG00000028520	4921539E11Rik	-	RIKEN cDNA 4921539E11 gene	protein-coding	5.0	4.5	4.0	21.5	51.0	56.5
Merged-chr13-43780114-2	chr13	43779614	43780614	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-4998.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99596192-2	chr10	99595692	99596692	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-12979.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71359519-2	chr8	71359019	71360019	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015742, intron 39 of 39)	intron (NM_015742, intron 39 of 39)	-7329.0	NM_001145780	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	0.0	5.0	0.0	2.0	0.0	2.0
Merged-chr15-86430468-2	chr15	86429968	86430968	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358062, intron 8 of 9)	intron (NM_001358062, intron 8 of 9)	152793.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-55937402-2	chr9	55936902	55937902	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357652, intron 1 of 32)	intron (NM_001357652, intron 1 of 32)	717.0	NM_001357652	244891.0	Mm.86588	NM_175536	ENSMUSG00000034007	Scaper	C430017I08|D530014O03Rik|Zfp291	S phase cyclin A-associated protein in the ER	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-33118537-1	chr14	33118037	33119037	+	669.5	f0_balb.idr	intron (NM_001146022, intron 13 of 58)	intron (NM_001146022, intron 13 of 58)	66529.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99359436-2	chr5	99358936	99359936	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-106509.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117745331-2	chr10	117744831	117745831	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029875, intron 1 of 4)	intron (NM_029875, intron 1 of 4)	1027.0	NM_029875	215436.0	Mm.256753	NM_029875	ENSMUSG00000060181	Slc35e3	9330166G04Rik|AI481200	solute carrier family 35, member E3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91424950-2	chr16	91424450	91425450	+	669.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008349, exon 7 of 7)	exon (NM_008349, exon 7 of 7)	18715.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123973301-2	chr5	123972801	123973801	+	669.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145070)	promoter-TSS (NM_145070)	-327.0	NM_145070	29816.0	Mm.149954	NM_145070	ENSMUSG00000000915	Hip1r	AA410023|mKIAA0655	huntingtin interacting protein 1 related	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-34442233-2	chr15	34441733	34442733	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163485, intron 3 of 4)	intron (NM_001163485, intron 3 of 4)	992.0	NM_009083	19946.0	Mm.358632	NM_009083	ENSMUSG00000058600	Rpl30	-	ribosomal protein L30	protein-coding	6.5	37.0	20.0	8.5	19.5	22.0
Merged-chr1-124210468-2	chr1	124209968	124210968	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-164909.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33898429-2	chr16	33897929	33898929	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 5 of 14)	intron (NM_001145884, intron 5 of 14)	68609.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7000014-2	chr19	6999514	7000514	+	669.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_027351)	TTS (NR_027351)	3883.0	NR_027351	107328.0	Mm.391161	NM_153597	ENSMUSG00000047656	Trpt1	AU079016|AW045591|Tpt1|Tpt1h	tRNA phosphotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98776891-2	chr12	98776391	98777391	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008506, intron 10 of 14)	intron (NM_001008506, intron 10 of 14)	5869.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110072053-2	chr9	110071553	110072553	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205330, intron 14 of 18)	intron (NM_001205330, intron 14 of 18)	20032.0	NM_001311164	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55252700-2	chr19	55252200	55253200	+	669.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027976)	promoter-TSS (NM_027976)	-669.0	NM_027976	433256.0	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59876705-2	chr13	59876205	59877205	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53558.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165585924-2	chr1	165585424	165586424	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48617.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-94948509-2	chr3	94948009	94949009	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-5599.0	NM_017395	53970.0	Mm.24308	NM_017395	ENSMUSG00000005774	Rfx5	-	regulatory factor X, 5 (influences HLA class II expression)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-9547029-2	chr1	9546529	9547529	+	669.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175236)	promoter-TSS (NM_175236)	-919.0	NM_175236	76187.0	Mm.28514	NM_175236	ENSMUSG00000025911	Adhfe1	6330565B14Rik|AI043035|Adh8|HOT	alcohol dehydrogenase, iron containing, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-8869978-2	chr16	8869478	8870478	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39878.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56470543-2	chr17	56470043	56471043	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252455, intron 1 of 27)	intron (NM_001252455, intron 1 of 27)	5937.0	NM_001252455	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84601646-3	chr8	84601157	84602157	+	669.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252060, intron 32 of 47)	intron (NM_001252060, intron 32 of 47)	61195.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	9.0	2.0	3.5	0.0	1.0	0.0
Merged-chr8-22165589-2	chr8	22165089	22166089	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011848, intron 1 of 15)	B1_Mur1|SINE|Alu	846.0	NM_011848	23954.0	Mm.41413	NM_011848	ENSMUSG00000031478	Nek3	-	NIMA (never in mitosis gene a)-related expressed kinase 3	protein-coding	0.0	4.0	3.0	1.5	4.5	14.5
Merged-chr3-96563248-2	chr3	96562748	96563748	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040409, intron 1 of 3)	intron (NR_040409, intron 1 of 3)	3553.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	17.5	37.5	31.0	10.5	24.0	14.5
Merged-chr3-51256097-2	chr3	51255597	51256597	+	669.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291063, exon 7 of 7)	3' UTR (NM_001291063, exon 7 of 7)	-20664.0	NR_073429	67746.0	Mm.441177	NR_073429	ENSMUSG00000087440	4930577N17Rik	-	RIKEN cDNA 4930577N17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100076811-2	chr15	100076311	100077311	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	38147.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78520776-2	chr10	78520276	78521276	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53724.0	NM_173751	216136.0	Mm.2644	NM_173751	ENSMUSG00000032763	Ilvbl	5830463I21|AI415009	ilvB (bacterial acetolactate synthase)-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80382598-2	chr10	80382098	80383098	+	669.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_198615, exon 2 of 2)	exon (NM_198615, exon 2 of 2)	5053.0	NM_198615	237400.0	Mm.268389	NM_198615	ENSMUSG00000048696	Mex3d	BC059858|Rkhd1	mex3 RNA binding family member D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-41416308-2	chr8	41415841	41416841	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013522, intron 1 of 8)	intron (NM_013522, intron 1 of 8)	777.0	NM_013522	14300.0	Mm.217312	NM_013522	ENSMUSG00000031590	Frg1	-	FSHD region gene 1	protein-coding	21.0	44.0	40.0	15.0	55.0	26.5
Merged-chr11-74847576-2	chr11	74847076	74848076	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	16652.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82780735-2	chr11	82780235	82781235	+	669.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291247)	promoter-TSS (NM_001291247)	307.0	NR_126068	100503272.0	Mm.486964	NR_126067	ENSMUSG00000085175	Gm11423	-	predicted gene 11423	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126317482-2	chr4	126316982	126317982	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133883, intron 4 of 5)	intron (NM_133883, intron 4 of 5)	4221.0	NM_133883	100206.0	Mm.11285	NM_133883	ENSMUSG00000042558	Adprhl2	AI836109|Arh3	ADP-ribosylhydrolase like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-84060430-2	chr6	84059930	84060930	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 4 of 54)	B4|SINE|B4	41044.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113639922-2	chr13	113639422	113640422	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	-21358.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105968232-2	chr1	105967720	105968720	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	22062.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	36.5	82.0	50.0	88.5	230.5	151.5
Merged-chr4-154301782-2	chr4	154301282	154302282	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1887.0	NM_001112744	230972.0	Mm.38481	NM_001112744	ENSMUSG00000029032	Arhgef16	-	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67364540-2	chr18	67364040	67365040	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007702, intron 3 of 4)	intron (NM_007702, intron 3 of 4)	-20437.0	NR_033214	338360.0	Mm.441590	NR_033214	ENSMUSG00000046415	B430212C06Rik	-	RIKEN cDNA B430212C06 gene	ncRNA	0.0	0.0	0.0	1.0	0.0	2.0
Merged-chr5-121598371-2	chr5	121597871	121598871	+	669.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178799)	TTS (NM_178799)	-4547.0	NM_001308450	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-111026666-3	chr7	111026161	111027161	+	669.472229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2290.0	NM_009431	22083.0	Mm.255858	NM_009431	ENSMUSG00000005609	Ctr9	AA409336|Sh2bp1|Tsbp|Tsp|mKIAA0155	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79228786-3	chr2	79228286	79229286	+	669.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-26640.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-26451399-3	chr12	26450910	26451910	+	669.400024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021384, intron 2 of 5)	intron (NM_021384, intron 2 of 5)	5042.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	19.0	11.0	12.0	15.0	14.5	22.0
Merged-chr5-120520834-2	chr5	120520334	120521334	+	669.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_133221, exon 6 of 16)	exon (NM_133221, exon 6 of 16)	9642.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184573619-3	chr1	184573082	184574082	+	669.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15891.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43924017-3	chr5	43923445	43924445	+	669.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55136.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	12.0	5.0	0.0	3.0	7.0	5.0
Merged-chr17-91390430-3	chr17	91389928	91390928	+	669.311096	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-297626.0	NM_020252	18189.0	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	6.0	11.5	9.5	11.5	7.5	22.5
Merged-chr2-13572576-3	chr2	13571994	13572994	+	669.253967	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1817.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106475649-2	chr9	106475163	106476163	+	669.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_145619, intron 2 of 10)	B1_Mus1|SINE|Alu	1286.0	NM_001311150	235587.0	Mm.273659	NM_145619	ENSMUSG00000023249	Parp3	A930002C11Rik|AW990611|Adprt3|Adprtl3|PARP-3|pADPRT-3	poly (ADP-ribose) polymerase family, member 3	protein-coding	9.0	32.0	37.5	16.5	49.5	35.0
Merged-chr12-3857319-2	chr12	3856819	3857819	+	669.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 3 of 22)	intron (NM_007872, intron 3 of 22)	4925.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30608952-2	chr14	30608452	30609452	+	669.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 3 of 17)	MIRb|SINE|MIR	1358.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108991622-3	chr12	108991130	108992130	+	669.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 3 of 6)	intron (NM_177602, intron 3 of 6)	76587.0	NM_001163175	380785.0	Mm.342085	NM_001163175	ENSMUSG00000040867	Begain	BM948371|Gm897	brain-enriched guanylate kinase-associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78885184-3	chr11	78884711	78885711	+	669.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16|LTR|ERVK	-35576.0	NM_010927	18126.0	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-108798683-2	chr4	108798183	108799183	+	669.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17595.0	NM_001347163	230597.0	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	0.0	10.0	0.0	0.0	11.0	0.0
Merged-chr2-21200148-3	chr2	21199646	21200646	+	669.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027728, intron 1 of 4)	intron (NM_027728, intron 1 of 4)	5219.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133592798-2	chr4	133592287	133593287	+	669.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8414.0	NM_133884	100210.0	Mm.274001	NM_133884	ENSMUSG00000028848	Gpn2	AI838661|Atpbd1b|R74630	GPN-loop GTPase 2	protein-coding	7.0	4.0	7.5	1.0	6.0	7.5
Merged-chr4-133302082-2	chr4	133301591	133302591	+	669.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_199306, intron 10 of 15)	intron (NM_199306, intron 10 of 15)	-24301.0	NR_110978	52174.0	Mm.244748	NM_025667	ENSMUSG00000028857	Tmem222	5730406H10Rik|AA409341|D4Ertd196e	transmembrane protein 222	protein-coding	3.0	3.0	10.5	0.0	0.0	2.0
Merged-chr4-10998925-3	chr4	10998421	10999421	+	669.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175175, intron 1 of 1)	intron (NM_175175, intron 1 of 1)	8698.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	15.5	39.0	18.0	4.5	28.0	15.0
Merged-chr1-64697457-3	chr1	64696959	64697959	+	669.0888669999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097644, intron 1 of 9)	intron (NM_001097644, intron 1 of 9)	6114.0	NM_001097644	227210.0	Mm.39706	NM_001097644	ENSMUSG00000070871	Ccnyl1	9630037P07Rik|AW554339	cyclin Y-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35162646-2	chr17	35162146	35163146	+	669.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199044, intron 2 of 30)	intron (NM_001199044, intron 2 of 30)	2231.0	NM_001199044	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104129964-3	chr8	104129470	104130470	+	669.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 6 of 11)	MTE2a|LTR|ERVL-MaLR	-24097.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17366289-3	chr10	17365781	17366781	+	669.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-270499.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27598099-2	chr15	27597599	27598599	+	669.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26605.0	NR_106065	102466808.0		NR_106065	ENSMUSG00000098416	Mir7117	Gm27729|mmu-mir-7117	microRNA 7117	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51494721-1	chr3	51494221	51495221	+	669.0	f0_balb.idr	3' UTR (NM_016858, exon 2 of 2)	3' UTR (NM_016858, exon 2 of 2)	10755.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-75843353-2	chr13	75842853	75843853	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053108, intron 1 of 2)	L2|LINE|L2	3467.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	0.0	0.0	0.5	0.0	7.0	7.0
Merged-chr6-125756436-2	chr6	125755936	125756936	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153589, intron 3 of 25)	RLTR31D_MM|LTR|ERVK	66017.0	NM_153589	243634.0	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71315317-1	chr8	71314817	71315817	+	669.0	f1_balb.idr	intron (NM_001142322, intron 3 of 39)	intron (NM_001142322, intron 3 of 39)	42603.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	8.5	3.5	1.5	0.0	5.0	2.0
Merged-chr6-43384128-2	chr6	43383628	43384628	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 8 of 8)	B4|SINE|B4	-58301.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101736852-2	chr13	101736352	101737352	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	31365.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-52091329-2	chr11	52090829	52091829	+	669.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7495.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64055114-2	chr15	64054614	64055614	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	4650.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-31812988-1	chr11	31812488	31813488	+	669.0	f1_balb.idr	intron (NR_102312, intron 1 of 4)	B3|SINE|B2	11559.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	1.5	14.5	10.5	5.0	10.0	3.0
Merged-chr12-112638443-2	chr12	112637943	112638943	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 11 of 12)	intron (NM_007421, intron 11 of 12)	-6385.0	NM_001161737	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20144345-2	chr13	20143845	20144845	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	53838.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	1.5	0.0	0.0	0.0	0.0	2.5
Merged-chr11-107347956-2	chr11	107347456	107348456	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	B1_Mm|SINE|Alu	122764.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156316606-1	chr2	156316106	156317106	+	669.0	f1_balb.idr	intron (NM_027585, intron 1 of 12)	intron (NM_027585, intron 1 of 12)	-3902.0	NM_020255	19018.0	Mm.389346	NM_020255	ENSMUSG00000046229	Scand1	2310003H23Rik|Leap1|PGC-2|Ppargc2	SCAN domain-containing 1	protein-coding	27.0	53.0	25.0	24.5	26.0	26.0
Merged-chr17-8803263-2	chr17	8802763	8803763	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011866, intron 1 of 21)	intron (NM_011866, intron 1 of 21)	1518.0	NM_011866	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	10.0	0.5	0.0	10.0	0.0	0.0
Merged-chr14-30745275-2	chr14	30744775	30745775	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166531, intron 2 of 21)	intron (NM_001166531, intron 2 of 21)	29660.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	54.5	42.5	39.5	54.0	52.5	41.5
Merged-chr1-120528241-1	chr1	120527741	120528741	+	669.0	f0_c57.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-23217.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	11.5	38.5	25.5	3.5	31.0	18.5
Merged-chr14-73195847-2	chr14	73195347	73196347	+	669.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009029, exon 27 of 27)	3' UTR (NM_009029, exon 27 of 27)	11004.0	NR_030459	751541.0		NR_030459	ENSMUSG00000076121	Mir687	Mirn687|mir-687|mmu-mir-687	microRNA 687	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83000982-1	chr6	83000482	83001482	+	669.0	f1_c57bl6.idr	intron (NM_033079, intron 4 of 9)	ERVB7_1-LTR_MM|LTR|ERVK	32489.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	1.0	5.5	0.0	3.5	7.0	2.5
Merged-chr15-77770422-2	chr15	77769922	77770922	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 27 of 40)	B1_Mur2|SINE|Alu	-13412.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88645166-1	chr3	88644666	88645666	+	669.0	f1_balb.idr	intron (NM_001198913, intron 20 of 21)	intron (NM_001198913, intron 20 of 21)	7976.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	2.0	6.5	14.0	2.5	8.0	7.0
Merged-chr7-112226799-3	chr7	112226256	112227256	+	669.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001193305, intron 1 of 25)	intron (NM_001193305, intron 1 of 25)	920.0	NM_001193305	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	0.0	0.0	0.0	1.0	0.0	1.0
Merged-chr11-94350934-2	chr11	94350434	94351434	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 29 of 30)	intron (NM_029600, intron 29 of 30)	22933.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23332385-3	chr16	23331894	23332894	+	669.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 5 of 7)	L1M4c|LINE|L1	41924.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-92940337-1	chr6	92939837	92940837	+	669.0	f0_balb.idr	promoter-TSS (NR_015530)	promoter-TSS (NR_015530)	-245.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	2.0	2.5	3.0	3.5	2.0	8.5
Merged-chr2-45003752-1	chr2	45003252	45004252	+	669.0	f0_balb.idr	intron (NM_001355291, intron 4 of 9)	intron (NM_001355291, intron 4 of 9)	19425.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76964716-1	chr14	76964216	76965216	+	669.0	f0_balb.idr	Intergenic	Intergenic	71901.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	24.0	14.0	8.5	10.0	12.5	29.0
Merged-chr5-4755760-2	chr5	4755260	4756260	+	669.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_021457, exon 1 of 1)	exon (NM_021457, exon 1 of 1)	2456.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr5-100466818-3	chr5	100466300	100467300	+	669.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001115010, intron 4 of 12)	intron (NM_001115010, intron 4 of 12)	31773.0	NM_001115010	231506.0	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-131912459-2	chr4	131911959	131912959	+	669.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_102394)	TTS (NR_102394)	7570.0	NR_102394	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135344197-2	chr1	135343697	135344697	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053106, intron 1 of 2)	(TG)n|Simple_repeat|Simple_repeat	19384.0	NM_053106	93689.0	Mm.180124	NM_053106	ENSMUSG00000048096	Lmod1	9530015K06Rik|SM-Lmod	leiomodin 1 (smooth muscle)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123686977-1	chr4	123686477	123687477	+	669.0	f0_balb.idr	Intergenic	CpG	-2617.0	NM_001199136	11426.0	Mm.402299	NM_009600	ENSMUSG00000028649	Macf1	ABP620|Acf7|Aclp7|MACF|R74989|mKIAA0465	microtubule-actin crosslinking factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-49415683-2	chr8	49415183	49416183	+	669.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-740993.0	NM_011857	23965.0	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21714210-2	chr9	21713710	21714710	+	669.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-9366.0	NM_001252658	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6966631-2	chr19	6966131	6967131	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290349, intron 2 of 30)	intron (NM_001290349, intron 2 of 30)	3183.0	NM_008874	18797.0	Mm.273204	NM_008874	ENSMUSG00000024960	Plcb3	mKIAA4098	phospholipase C, beta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25750878-2	chr15	25750378	25751378	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 19 of 40)	intron (NM_019472, intron 19 of 40)	-2328.0	NM_001353142	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115492909-2	chr11	115492413	115493413	+	669.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_136931, exon 1 of 1)	non-coding (NR_136931, exon 1 of 1)	-1099.0	NM_015807	50773.0	Mm.390379	NM_015807	ENSMUSG00000020736	Nt5c	Dnt|Dnt1|Umph-2|Umph2	5',3'-nucleotidase, cytosolic	protein-coding	2.0	3.0	6.0	2.5	3.0	4.0
Merged-chr1-98094957-3	chr1	98094445	98095445	+	669.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357127, intron 1 of 25)	intron (NM_001357127, intron 1 of 25)	687.0	NM_013626	18484.0	Mm.5121	NM_013626	ENSMUSG00000026335	Pam	PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-44979252-3	chr2	44978731	44979731	+	669.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43946.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80144345-1	chr11	80143845	80144845	+	669.0	f0_balb.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-2192.0	NM_183275	68550.0	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-59321455-2	chr3	59320955	59321955	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162884, intron 6 of 6)	intron (NM_001162884, intron 6 of 6)	22801.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	0.0	0.0	1.5	2.0	6.0	0.0
Merged-chr2-90442710-2	chr2	90442210	90443210	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 21 of 23)	intron (NM_008982, intron 21 of 23)	36464.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100159400-2	chr5	100158900	100159900	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_182841, intron 1 of 7)	CpG	408.0	NM_182841	231503.0	Mm.99790	NM_182841	ENSMUSG00000050640	Tmem150c	-	transmembrane protein 150C	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr9-104264430-2	chr9	104263930	104264930	+	669.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1500.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-46794919-2	chr7	46794419	46795419	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005247, intron 1 of 22)	B1_Mus1|SINE|Alu	962.0	NM_001005248	246694.0	Mm.379442	NM_178742	ENSMUSG00000014418	Hps5	AI646796|AL022647|C85120|haze|hz|maroon|mr|ru-2|ru2	HPS5, biogenesis of lysosomal organelles complex 2 subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-53511091-2	chr8	53510591	53511591	+	669.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205054)	promoter-TSS (NM_001205054)	-611.0	NM_001205054	11593.0	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80696581-1	chr7	80696081	80697081	+	669.0	f0_c57.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-7704.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	0.0	1.5	7.0	0.0	0.0	0.0
Merged-chr14-115040165-2	chr14	115039665	115040665	+	669.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3506.0	NR_029785	723905.0		NR_029785	ENSMUSG00000065508	Mir17	Mirn17|mir-17|mmu-mir-17	microRNA 17	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-105652208-2	chr13	105651708	105652708	+	669.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	208515.0	NM_008308	15550.0	Mm.4716	NM_008308	ENSMUSG00000021721	Htr1a	Gpcr18	5-hydroxytryptamine (serotonin) receptor 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-55230653-2	chr6	55230153	55231153	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142781, intron 5 of 17)	MIRc|SINE|MIR	27270.0	NM_001142781	330323.0	Mm.268997	NM_177883	ENSMUSG00000038022	Mindy4	C330043M08Rik|Fam188b|Gm1406	MINDY lysine 48 deubiquitinase 4	protein-coding	1.5	10.5	3.0	3.0	0.0	2.0
Merged-chr18-34495931-1	chr18	34495431	34496431	+	669.0	f1_c57bl6.idr	intron (NM_146084, intron 4 of 20)	B4A|SINE|B4	10892.0	NM_146084	225358.0	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	13.5	0.0	2.0	15.5	2.5	3.0
Merged-chr2-138659955-2	chr2	138659455	138660455	+	669.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-159974.0	NR_035477	100316816.0		NR_035477	ENSMUSG00000088983	Mir1952	mmu-mir-1952	microRNA 1952	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63449158-2	chr14	63448658	63449658	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177628, intron 2 of 3)	intron (NM_177628, intron 2 of 3)	12764.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-91543145-3	chr13	91542652	91543652	+	669.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 3 of 15)	intron (NM_001360776, intron 3 of 15)	82055.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	24.0	6.5	6.0	18.0	0.0	6.0
Merged-chr11-55087158-2	chr11	55086658	55087658	+	669.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9027.0	NM_177471	52570.0	Mm.22361	NM_177471	ENSMUSG00000049588	Ccdc69	2210021E03Rik|D11Ertd461e	coiled-coil domain containing 69	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78948619-1	chr15	78948119	78949119	+	669.0	f1_c57bl6.idr	intron (NM_001039156, intron 2 of 24)	intron (NM_001039156, intron 2 of 24)	895.0	NM_001039155	110253.0	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	2.0	8.5	1.0	4.0	3.0	3.5
Merged-chr15-97161445-2	chr15	97160945	97161945	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155279, intron 2 of 2)	intron (NR_155279, intron 2 of 2)	5799.0	NR_155278	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-127249701-2	chr1	127249201	127250201	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	44715.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108092105-2	chr9	108091605	108092605	+	669.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_146226, exon 8 of 22)	exon (NM_146226, exon 8 of 22)	2375.0	NM_146226	235606.0	Mm.219639	NM_146226	ENSMUSG00000032590	Apeh	-	acylpeptide hydrolase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124616303-2	chr5	124615803	124616803	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026486, intron 10 of 18)	intron (NM_026486, intron 10 of 18)	-12749.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3359436-2	chr19	3358936	3359936	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 5 of 18)	intron (NM_013495, intron 5 of 18)	-29421.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-10418343-1	chr3	10417843	10418843	+	669.0	f0_balb.idr	3' UTR (NM_029068, exon 8 of 8)	3' UTR (NM_029068, exon 8 of 8)	21787.0	NM_029068	74718.0	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-11942337-2	chr18	11941837	11942837	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022021, intron 8 of 8)	intron (NM_022021, intron 8 of 8)	-101899.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103273973-2	chr15	103273473	103274473	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019817, intron 1 of 8)	B1_Mur2|SINE|Alu	1085.0	NM_001357748	56447.0	Mm.29473	NM_019817	ENSMUSG00000060992	Copz1	5930435A22Rik|AA407760|D4Ertd360e	coatomer protein complex, subunit zeta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139206915-2	chr4	139206415	139207415	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	12804.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	13.0	15.0	12.5	13.0	11.0	10.0
Merged-chr1-97650265-3	chr1	97649768	97650768	+	669.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355071, intron 1 of 1)	intron (NM_001355071, intron 1 of 1)	11408.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172048235-2	chr1	172047735	172048735	+	669.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	9361.0	NM_010916	18071.0	Mm.2474	NM_010916	ENSMUSG00000051251	Nhlh1	Hen1|Nscl|Tal2|bHLHa35	nescient helix loop helix 1	protein-coding	3.5	15.0	14.5	3.0	8.5	8.5
Merged-chr3-78528736-2	chr3	78528236	78529236	+	669.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	616151.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.0	0.0	0.0	2.0	0.0	3.5
Merged-chr9-121638887-1	chr9	121638387	121639387	+	669.0	f1_c57bl6.idr	intron (NM_026915, intron 1 of 5)	ID_B1|SINE|B4	2706.0	NM_026915	69032.0	Mm.33351	NM_026915	ENSMUSG00000032530	Lyzl4	1810009N24Rik|AI504271|Lyc4|Lyza	lysozyme-like 4	protein-coding	0.0	0.0	0.5	4.0	0.0	0.5
Merged-chr7-110260961-2	chr7	110260472	110261472	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009302, intron 3 of 11)	L1_Mus4|LINE|L1	39269.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-8827900-2	chr16	8827400	8828400	+	669.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2200.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106428325-1	chr1	106427825	106428825	+	669.0	f1_balb.idr	Intergenic	LTR16C|LTR|ERVL	118306.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0.0	1.0	2.0	5.0	0.0	1.5
Merged-chr11-87018224-2	chr11	87017724	87018724	+	669.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24462.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31055218-2	chr6	31054718	31055718	+	669.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	7529.0	NR_029744	387222.0		NR_029744	ENSMUSG00000065610	Mir29a	Mirn29a|mir-29a|mmu-mir-29a	microRNA 29a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-68952220-1	chr5	68951720	68952720	+	669.0	f1_balb.idr	Intergenic	L1_Mus2|LINE|L1	389489.0	NM_175519	243043.0	Mm.234821	NM_175519	ENSMUSG00000037653	Kctd8	A730087N02Rik	potassium channel tetramerisation domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129285947-2	chr4	129285447	129286447	+	669.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1674.0	NM_023485	68828.0	Mm.132243	NM_023485	ENSMUSG00000001333	Sync	1110057H03Rik|SNIP4	syncoilin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96038562-2	chr10	96038062	96039062	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001932, intron 24 of 28)	MTD|LTR|ERVL-MaLR	97899.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29050136-2	chr17	29049560	29050560	+	669.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17400.0	NR_036613	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	0.0	0.0	2.0	8.0	0.0	1.5
Merged-chr16-4425988-2	chr16	4425488	4426488	+	669.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1ME|LINE|L1	-5490.0	NM_009624	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128757355-2	chr2	128756855	128757855	+	668.974976	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 6 of 18)	MT2B1|LTR|ERVL	58440.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	4.5	8.0	5.0	0.0	5.0	0.0
Merged-chr9-65570974-3	chr9	65570552	65571552	+	668.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 2 of 5)	B4|SINE|B4	9035.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	15.5	59.5	32.0	9.0	37.0	22.0
Merged-chr4-20191899-2	chr4	20191399	20192399	+	668.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290410, intron 4 of 5)	(TG)n|Simple_repeat|Simple_repeat	149847.0	NM_010281	14590.0	Mm.20461	NM_010281	ENSMUSG00000073987	Ggh	gamma-GH	gamma-glutamyl hydrolase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-77841670-2	chr14	77841171	77842171	+	668.875	f0_c57.idr|f1_c57bl6.idr	intron (NM_025384, intron 4 of 5)	intron (NM_025384, intron 4 of 5)	33246.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	22.5	69.0	46.0	10.5	23.0	7.0
Merged-chr9-80162818-2	chr9	80162318	80163318	+	668.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2216.0	NM_001039546	17920.0	Mm.4040	NM_008662	ENSMUSG00000033577	Myo6	BC029719|Tlc|sv	myosin VI	protein-coding	0.0	2.0	3.5	0.0	2.0	3.0
Merged-chr3-52069435-2	chr3	52068935	52069935	+	668.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	35571.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86878596-2	chr12	86878096	86879096	+	668.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6218.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47450221-2	chr6	47449789	47450789	+	668.791626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-3443.0	NM_001355551	26965.0	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	Cul-1	cullin 1	protein-coding	1.0	0.0	0.5	0.0	0.0	7.0
Merged-chr4-142065572-3	chr4	142065072	142066072	+	668.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	MIRc|SINE|MIR	-18726.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143459795-3	chr7	143459307	143460307	+	668.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001161624, exon 2 of 4)	exon (NM_001161624, exon 2 of 4)	1243.0	NM_009876	12577.0	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100764911-3	chr12	100764407	100765407	+	668.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14150.0	NM_001361023	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11684212-2	chr11	11683712	11684712	+	668.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1713.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-36105496-2	chr2	36104996	36105996	+	668.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083125)	promoter-TSS (NM_001083125)	-88.0	NM_008500	16874.0	Mm.12881	NM_008500	ENSMUSG00000026890	Lhx6	Lhx6.1	LIM homeobox protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80305086-4	chr10	80304576	80305576	+	668.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011789, intron 5 of 13)	CpG-1275	3256.0	NM_011789	23805.0	Mm.57247	NM_011789	ENSMUSG00000020135	Apc2	AI852447|APCL|R75424	adenomatosis polyposis coli 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146783911-2	chr3	146783411	146784411	+	668.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011100, intron 1 of 9)	intron (NM_011100, intron 1 of 9)	-2495.0	NM_001164200	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6557108-2	chr2	6556608	6557608	+	668.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110231, intron 13 of 15)	intron (NM_001110231, intron 13 of 15)	164554.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55630909-2	chr4	55630394	55631394	+	668.75	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-98419.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	27.0	88.5	54.5	30.0	60.5	50.0
Merged-chr17-86147333-2	chr17	86146833	86147833	+	668.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B2|LTR|ERVL	-2158.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81658713-4	chr13	81658188	81659188	+	668.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030257, intron 1 of 2)	intron (NM_030257, intron 1 of 2)	882.0	NM_030257	80289.0	Mm.259969	NM_030257	ENSMUSG00000035840	Lysmd3	1110030H10Rik|BC003322	LysM, putative peptidoglycan-binding, domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30630448-2	chr2	30629948	30630948	+	668.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	35404.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0.0	0.0	0.0	0.0	0.0	4.0
Merged-chr9-44508068-2	chr9	44507568	44508568	+	668.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357490, intron 6 of 7)	intron (NM_001357490, intron 6 of 7)	8932.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34815359-3	chr8	34814856	34815856	+	668.688904	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176933, intron 1 of 3)	intron (NM_176933, intron 1 of 3)	7746.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	0.0	0.0	2.0	0.0	3.5	2.0
Merged-chr11-52056350-3	chr11	52055838	52056838	+	668.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166654, intron 13 of 13)	RMER19B|LTR|ERVK	-42486.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13668587-2	chr16	13668087	13669087	+	668.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028761)	promoter-TSS (NM_028761)	-417.0	NM_001358453	74108.0	Mm.182350	NM_028761	ENSMUSG00000022685	Parn	1200003I18Rik|DAN	poly(A)-specific ribonuclease (deadenylation nuclease)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84986396-1	chr1	84985896	84986896	+	668.666687	f1_balb.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-51313.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7553747-3	chr9	7553247	7554247	+	668.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4682.0	NM_008611	17394.0	Mm.16415	NM_008611	ENSMUSG00000005800	Mmp8	BB138268	matrix metallopeptidase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83973937-3	chr17	83973446	83974446	+	668.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24606.0	NR_130994	78148.0	Mm.243918	NR_130994		8430430B14Rik	-	RIKEN cDNA 8430430B14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55518941-2	chr11	55518441	55519441	+	668.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290821, intron 8 of 8)	intron (NM_001290821, intron 8 of 8)	17715.0	NR_106112	102465760.0		NR_106112	ENSMUSG00000098906	Mir7652	Gm27932|mmu-mir-7652	microRNA 7652	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80821140-2	chr7	80820640	80821640	+	668.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17809.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99195256-4	chr9	99194742	99195742	+	668.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	41997.0	NM_001244762	623459.0	Mm.260891	NM_001244762	ENSMUSG00000096316	Faiml	EG623459|Gm6432	Fas apoptotic inhibitory molecule like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115625634-2	chr11	115625134	115626134	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252395, intron 1 of 7)	ORR1B2|LTR|ERVL-MaLR	2661.0	NM_001252394	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11715162-2	chr16	11714662	11715662	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 19 of 20)	intron (NM_028964, intron 19 of 20)	-64540.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25312066-2	chr10	25311574	25312574	+	668.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12911.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0.0	2.5	3.0	1.0	0.0	6.0
Merged-chr2-91932743-2	chr2	91932243	91933243	+	668.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291483)	promoter-TSS (NM_001291483)	-446.0	NM_010784	17242.0	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27239898-2	chr7	27239398	27240398	+	668.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133770, exon 6 of 15)	exon (NM_133770, exon 6 of 15)	6885.0	NM_133770	76889.0	Mm.124728	NM_133770	ENSMUSG00000003762	Coq8b	0610012P18Rik|Adck4	coenzyme Q8B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102724888-2	chr12	102724388	102725388	+	668.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	18773.0	NM_001142937	64113.0	Mm.291222	NM_022323	ENSMUSG00000096458	Moap1	AA987038|Map-1|Pnma4	modulator of apoptosis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127146542-2	chr7	127146042	127147042	+	668.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-8719.0	NM_001037810	20737.0	Mm.283714	NM_009259	ENSMUSG00000051457	Spn	A630014B01Rik|Cd43|Galgp|Ly-48|Ly48	sialophorin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-19590106-2	chr15	19589606	19590606	+	668.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	404733.0	NR_155419	102639102.0	Mm.463245	NR_155419	ENSMUSG00000115803	Gm35496	-	predicted gene, 35496	ncRNA	0.0	0.0	1.0	5.0	0.0	1.0
Merged-chr7-127206139-2	chr7	127205639	127206639	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144522, intron 1 of 8)	intron (NM_144522, intron 1 of 8)	2329.0	NM_144522	68449.0	Mm.41420	NM_144522	ENSMUSG00000042492	Tbc1d10b	1110003P22Rik|C87963	TBC1 domain family, member 10b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-101078743-2	chr9	101078243	101079243	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001100451, intron 1 of 1)	intron (NM_001100451, intron 1 of 1)	3981.0	NM_001100451	77853.0	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	MSL complex subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124637096-2	chr2	124636596	124637596	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	-16485.0	NM_199240	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16616346-2	chr7	16615846	16616846	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_136929, intron 1 of 2)	intron (NR_136929, intron 1 of 2)	-1353.0	NM_172739	232906.0	Mm.28646	NM_172739	ENSMUSG00000058230	Arhgap35	6430596G11Rik|AI841135|Grlf1|mKIAA1722|p190A|p190RhoGAP	Rho GTPase activating protein 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23976709-2	chr17	23976213	23977213	+	668.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1483.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	5.5	12.5	2.0	9.0	11.0	9.0
Merged-chr16-21253371-2	chr16	21252871	21253871	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_046162, intron 4 of 4)	intron (NR_046162, intron 4 of 4)	2695.0	NR_106145	102465781.0		NR_106145	ENSMUSG00000098400	Mir7680	Gm27417|mmu-mir-7680	microRNA 7680	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-123053885-2	chr6	123053385	123054385	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027218, intron 2 of 4)	intron (NM_027218, intron 2 of 4)	3923.0	NM_001190310	69810.0	Mm.333374	NM_027218	ENSMUSG00000030147	Clec4b1	1810046I24Rik|Aplra2|Clec4b|DCAR|DCARbeta|Dcar2	C-type lectin domain family 4, member b1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56434554-2	chr17	56434054	56435054	+	668.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001252456, exon 10 of 29)	exon (NM_001252456, exon 10 of 29)	-15645.0	NR_105943	102465590.0		NR_105943	ENSMUSG00000098339	Mir6977	Gm27922|mmu-mir-6977	microRNA 6977	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-28928610-2	chr16	28928110	28929110	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177718, intron 1 of 1)	intron (NM_177718, intron 1 of 1)	1088.0	NM_177718	239796.0	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119807068-2	chr8	119806568	119807568	+	668.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28652.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-9745786-2	chr1	9745286	9746286	+	668.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_173443, exon 1 of 3)	exon (NM_173443, exon 1 of 3)	-1862.0	NR_040462	73331.0	Mm.460470	NR_040462		1700034P13Rik	-	RIKEN cDNA 1700034P13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70621608-2	chr11	70621108	70622108	+	668.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2414.0	NM_009603	11448.0	Mm.4980	NM_009603	ENSMUSG00000014609	Chrne	AChrepsilon|Acre|nAChRE	cholinergic receptor, nicotinic, epsilon polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127197088-2	chr7	127196588	127197588	+	668.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_144522)	TTS (NM_144522)	-1011.0	NM_027353	70233.0	Mm.28050	NM_027353	ENSMUSG00000042502	Cd2bp2	1500011B02Rik|2410024K20Rik|AW048183	CD2 antigen (cytoplasmic tail) binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37944543-2	chr13	37944043	37945043	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177869, intron 10 of 11)	intron (NM_001177869, intron 10 of 11)	49665.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128089687-2	chr10	128089187	128090187	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016774, intron 9 of 9)	intron (NM_016774, intron 9 of 9)	-3096.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11600182-2	chr2	11599682	11600682	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_152824, intron 2 of 11)	intron (NM_152824, intron 2 of 11)	3017.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-38052898-2	chr19	38052388	38053388	+	668.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2096.0	NM_028293	74107.0	Mm.9916	NM_028293	ENSMUSG00000024989	Cep55	1200008O12Rik|2700032M20Rik	centrosomal protein 55	protein-coding	0.0	0.0	3.0	0.0	1.0	2.0
Merged-chr8-84904703-2	chr8	84904203	84905203	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010635, intron 2 of 2)	intron (NM_010635, intron 2 of 2)	2775.0	NM_010635	16596.0	Mm.4847	NM_010635	ENSMUSG00000054191	Klf1	Eklf|Nan	Kruppel-like factor 1 (erythroid)	protein-coding	0.0	3.5	5.0	0.0	0.0	3.0
Merged-chr1-87264773-2	chr1	87264273	87265273	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028889, intron 1 of 3)	CpG	420.0	NR_151447	98363.0	Mm.247951	NM_028889	ENSMUSG00000026255	Efhd1	4931430I01Rik|AI452351|PP3051|mitocalcin	EF hand domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43510127-1	chr19	43509627	43510627	+	668.5	f1_balb.idr	intron (NM_010324, intron 2 of 8)	B3A|SINE|B2	14478.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	2.0	4.5	6.0	0.0	2.5	11.5
Merged-chr9-88746902-2	chr9	88746402	88747402	+	668.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15052.0	NM_007536	12047.0	Mm.378888	NM_007536	ENSMUSG00000099974	Bcl2a1d	A1-d	B cell leukemia/lymphoma 2 related protein A1d	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-115837936-2	chr4	115837436	115838436	+	668.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1262.0	NM_001285488	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	22.5	54.0	44.0	15.5	66.5	33.5
Merged-chr13-113351774-2	chr13	113351274	113352274	+	668.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	142115.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3748902-1	chr4	3748402	3749402	+	668.5	f1_c57bl6.idr	intron (NM_001111096, intron 8 of 12)	intron (NM_001111096, intron 8 of 12)	33938.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0.0	1.5	0.0	0.0	0.5	4.0
Merged-chr10-10546836-2	chr10	10546336	10547336	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026405, intron 2 of 2)	intron (NM_026405, intron 2 of 2)	11371.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90452300-2	chr2	90451811	90452811	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 13 of 23)	intron (NM_008982, intron 13 of 23)	26863.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135111560-2	chr1	135111082	135112082	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153383, intron 26 of 36)	B2_Mm1a|SINE|B2	-6306.0	NM_001033409	329252.0	Mm.279594	NM_001033409	ENSMUSG00000042793	Lgr6	A530037C04Rik|D830026M09	leucine-rich repeat-containing G protein-coupled receptor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-63872969-2	chr17	63872469	63873469	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 1 of 18)	B4A|SINE|B4	-5097.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122616733-2	chr10	122616233	122617233	+	668.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31606.0	NR_105839	102465223.0		NR_105839	ENSMUSG00000098522	Mir6412	Gm27364|mmu-mir-6412	microRNA 6412	ncRNA	6.0	1.0	3.0	6.0	1.0	3.0
Merged-chr17-64667135-2	chr17	64666635	64667635	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 7 of 21)	intron (NM_008549, intron 7 of 21)	65486.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49290187-2	chr13	49289687	49290687	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 3 of 17)	intron (NM_015759, intron 3 of 17)	19021.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-144644319-2	chr6	144643819	144644819	+	668.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28549.0	NR_040519	66760.0	Mm.233631	NR_040519	ENSMUSG00000085785	Sox5os3	4933425H06Rik	SRY (sex determining region Y)-box 5, opposite strand 3	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125045348-2	chr6	125044848	125045848	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133345, intron 2 of 7)	intron (NM_133345, intron 2 of 7)	4505.0	NR_130997	78202.0	Mm.445941	NR_130997	ENSMUSG00000108034	4930557K07Rik	Gm43989	RIKEN cDNA 4930557K07 gene	ncRNA	2.0	8.0	0.0	0.0	4.5	0.0
Merged-chr17-25285274-3	chr17	25284783	25285783	+	668.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10973.0	NM_011665	22196.0	Mm.240044	NM_011665	ENSMUSG00000015120	Ube2i	5830467E05Rik|UBC9|Ubce2i|Ubce9	ubiquitin-conjugating enzyme E2I	protein-coding	6.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-69471885-3	chr18	69471385	69472385	+	668.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 5 of 19)	intron (NM_001361128, intron 5 of 19)	125725.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	13.0	2.0	2.5	18.5	11.5	20.5
Merged-chr2-155274928-3	chr2	155274493	155275493	+	668.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1371.0	NM_025735	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	12.5	7.0	1.0	10.0	6.5	0.0
Merged-chr7-58677364-3	chr7	58676805	58677805	+	668.416687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009728, intron 1 of 20)	intron (NM_009728, intron 1 of 20)	19103.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	14.5	12.5	14.0	1.0	0.0	0.0
Merged-chr10-125419034-4	chr10	125418546	125419546	+	668.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90083.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99090725-4	chr7	99090227	99091227	+	668.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 4 of 14)	intron (NM_178635, intron 4 of 14)	50417.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	16.5	26.5	21.0	26.0	20.5	29.0
Merged-chr15-99002629-2	chr15	99002129	99003129	+	668.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	16664.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132797710-2	chr4	132797210	132798210	+	668.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1346.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108650012-2	chr12	108649512	108650512	+	668.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 3 of 14)	MLT1A1|LTR|ERVL-MaLR	-8608.0	NR_029771	723909.0		NR_029771	ENSMUSG00000065436	Mir342	Mirn342|mmu-mir-342	microRNA 342	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118573501-1	chr2	118573001	118574001	+	668.333313	f0_balb.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-23815.0	NM_138313	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	9.0	2.0	0.5	12.0	11.5	3.5
Merged-chr9-97307955-3	chr9	97307456	97308456	+	668.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62002.0	NM_030219	78911.0	Mm.108347	NM_030219	ENSMUSG00000032451	Trim42	4930486B16Rik	tripartite motif-containing 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77515822-3	chr11	77515301	77516301	+	668.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026185, exon 1 of 2)	exon (NM_026185, exon 1 of 2)	684.0	NM_026185	67477.0	Mm.432526	NM_026185	ENSMUSG00000000686	Abhd15	1300007F04Rik	abhydrolase domain containing 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17583288-3	chr16	17582733	17583733	+	668.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-6343.0	NM_001359891	224022.0	Mm.298878	NM_144852	ENSMUSG00000022756	Slc7a4	AI853530	solute carrier family 7 (cationic amino acid transporter, y+ system), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118157351-2	chr14	118156851	118157851	+	668.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_021434, intron 5 of 8)	intron (NM_021434, intron 5 of 8)	20224.0	NM_021434	58245.0	Mm.275411	NM_021434	ENSMUSG00000022131	Gpr180	AB041545|E130016I23Rik|Itr	G protein-coupled receptor 180	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92215435-3	chr1	92214936	92215936	+	668.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35095.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0.0	9.0	8.5	4.0	5.0	9.5
Merged-chr10-8370089-4	chr10	8369639	8370639	+	668.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 2 of 7)	intron (NM_177387, intron 2 of 7)	148686.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132416650-6	chr1	132416163	132417163	+	668.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172516)	promoter-TSS (NM_172516)	-790.0	NM_172516	213452.0	Mm.257120	NM_172516	ENSMUSG00000042046	Dstyk	A930019K20Rik|C430014H23Rik|C820013G01|Ripk5	dual serine/threonine and tyrosine protein kinase	protein-coding	8.0	27.0	12.5	7.0	8.0	2.5
Merged-chr4-150219669-2	chr4	150219169	150220169	+	668.299988	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-17528.0	NM_023119	13806.0	Mm.70666	NM_023119	ENSMUSG00000063524	Eno1	0610008I15|AL022784|Eno-1|MBP-1	enolase 1, alpha non-neuron	protein-coding	8.0	0.0	0.0	0.0	0.0	2.0
Merged-chr2-90464281-2	chr2	90463781	90464781	+	668.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 6 of 23)	MTD|LTR|ERVL-MaLR	14893.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135463077-2	chr5	135462577	135463577	+	668.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	-68531.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91453843-2	chr16	91453343	91454343	+	668.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11261.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	2.5	13.5	0.0	2.5	7.0	0.0
Merged-chr15-102245580-2	chr15	102245080	102246080	+	668.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011244, intron 3 of 9)	intron (NM_011244, intron 3 of 9)	920.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-116971139-2	chr2	116970639	116971639	+	668.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	(ATGGTG)n|Simple_repeat|Simple_repeat	70987.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180830669-2	chr1	180830169	180831169	+	668.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17064.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154604892-2	chr2	154604392	154605392	+	668.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1219.0	NM_021534	59038.0	Mm.24673	NM_021534	ENSMUSG00000000876	Pxmp4	3010018P03Rik|Pmp24	peroxisomal membrane protein 4	protein-coding	17.5	44.0	24.5	17.0	44.0	27.0
Merged-chr4-48075736-3	chr4	48075252	48076252	+	668.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015743, intron 7 of 7)	intron (NM_015743, intron 7 of 7)	24506.0	NM_001307989	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109245834-3	chr4	109245315	109246315	+	668.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033226, intron 5 of 7)	intron (NM_001033226, intron 5 of 7)	10183.0	NM_001033226	108802.0	Mm.318248	NM_001033226	ENSMUSG00000028558	Calr4	4933403L16Rik|AU017583	calreticulin 4	protein-coding	0.0	0.0	1.0	0.0	3.0	2.5
Merged-chr18-65001314-3	chr18	65000823	65001823	+	668.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 2 of 30)	intron (NM_001114386, intron 2 of 30)	-22204.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	4.0	7.0	1.5	3.0	0.0	3.0
Merged-chr16-5406912-3	chr16	5406437	5407437	+	668.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-150981.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3598015-2	chr7	3597515	3598515	+	668.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	18142.0	NM_175632	232790.0	Mm.358882	NM_175632	ENSMUSG00000054594	Oscar	mOSCAR|mOSCAR-M1|mOSCAR-M2|mOSCAR-M3	osteoclast associated receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117918924-4	chr4	117918432	117919432	+	668.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3933.0	NM_146152	230673.0	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	1.0	3.5	2.5	4.0	3.0	1.0
Merged-chr7-98311582-3	chr7	98311102	98312102	+	668.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360615, intron 1 of 10)	B4|SINE|B4	-2060.0	NM_025408	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-24407420-3	chr18	24406903	24407903	+	668.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21767.0	NR_029573	387182.0		NR_029573	ENSMUSG00000065532	Mir187	Mirn187|mir-187|mmu-mir-187	microRNA 187	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132237646-2	chr1	132237146	132238146	+	668.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311104, intron 4 of 4)	intron (NM_001311104, intron 4 of 4)	11332.0	NR_132336	213409.0	Mm.426321	NM_001033250	ENSMUSG00000079330	Lemd1	4930540I23Rik|6430514M23Rik|AI428128|LEMP-1	LEM domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19685684-2	chr10	19685184	19686184	+	668.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-26903.0	NM_172786	237313.0	Mm.234667	NM_172786	ENSMUSG00000020007	Il20ra	E230031K19	interleukin 20 receptor, alpha	protein-coding	1.5	2.0	2.0	1.0	2.0	1.5
Merged-chr10-89772072-2	chr10	89771572	89772572	+	668.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029166, intron 1 of 20)	intron (NM_029166, intron 1 of 20)	27081.0	NM_029166	75089.0	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	3.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44611239-4	chr11	44610710	44611710	+	668.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6890.0	NM_001290711	13591.0	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23821721-3	chr18	23821229	23822229	+	668.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	17759.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.0	2.0	0.0	2.0	4.0	2.5
Merged-chr1-161400349-3	chr1	161399843	161400843	+	668.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009452, intron 1 of 2)	intron (NM_009452, intron 1 of 2)	4905.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	0.0	5.5	2.5	0.0	0.0	2.5
Merged-chr10-29107091-2	chr10	29106591	29107591	+	668.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-36905.0	NM_026138	67412.0	Mm.390264	NM_026138	ENSMUSG00000038916	Soga3	6330407J23Rik	SOGA family member 3	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr3-134339292-1	chr3	134338792	134339792	+	668.0	f0_balb.idr	Intergenic	Intergenic	84343.0	NR_040600	75208.0	Mm.84580	NR_040600	ENSMUSG00000105765	4930539C22Rik	-	RIKEN cDNA 4930539C22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-5456799-1	chr15	5456299	5457299	+	668.0	f0_balb.idr	Intergenic	ID_B1|SINE|B4	-39519.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40466820-1	chr9	40466320	40467320	+	668.0	f0_balb.idr	intron (NM_001357617, intron 1 of 20)	T-rich|Low_complexity|Low_complexity	-11056.0	NM_172768	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.0	0.0	0.0	9.0	4.5	2.0
Merged-chr12-91591822-2	chr12	91591322	91592322	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1335.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87263045-1	chr17	87262545	87263545	+	668.0	f1_balb.idr	intron (NM_139295, intron 1 of 3)	intron (NM_139295, intron 1 of 3)	2902.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	11.5	49.5	44.0	5.0	9.5	27.5
Merged-chr15-89303094-2	chr15	89302594	89303594	+	668.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001170561, exon 19 of 41)	exon (NM_001170561, exon 19 of 41)	2638.0	NR_105924	102465981.0		NR_105924	ENSMUSG00000098442	Mir6959	Gm27807|mmu-mir-6959	microRNA 6959	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118756584-1	chr9	118756084	118757084	+	668.0	f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	44892.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	1.5	3.0	1.0	6.5	0.0	3.0
Merged-chr10-67550270-2	chr10	67549770	67550770	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1315.0	NM_001005419	211488.0	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97339685-1	chr6	97339185	97340185	+	668.0	f1_balb.idr	intron (NM_145148, intron 8 of 23)	intron (NM_145148, intron 8 of 23)	-86905.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	1.5	6.5	6.0	3.0	18.0	3.0
Merged-chr3-79180940-2	chr3	79180440	79181440	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31979.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-128629329-2	chr3	128628828	128629828	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-397723.0	NR_045704	402774.0	Mm.209170	NR_045704	ENSMUSG00000105816	D030025E07Rik	-	RIKEN cDNA D030025E07 gene	ncRNA	0.0	7.0	0.5	5.5	3.0	11.0
Merged-chr16-36637933-2	chr16	36637433	36638433	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	L3|LINE|CR1	28144.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22665488-2	chr11	22664988	22665988	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153205.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35159160-2	chr17	35158660	35159660	+	668.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_020027, exon 12 of 31)	exon (NM_020027, exon 12 of 31)	5717.0	NM_001199044	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0.0	6.5	0.0	0.0	4.5	6.5
Merged-chr7-30435818-3	chr7	30435425	30436425	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007467, intron 14 of 16)	intron (NM_007467, intron 14 of 16)	9657.0	NM_007467	11803.0	Mm.2381	NM_007467	ENSMUSG00000006651	Aplp1	-	amyloid beta (A4) precursor-like protein 1	protein-coding	2.0	5.0	0.0	0.0	3.0	2.5
Merged-chr9-90260317-1	chr9	90259817	90260817	+	668.0	f0_balb.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	10452.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16158247-1	chr1	16157747	16158747	+	668.0	f1_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	52365.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	7.0	1.0	9.0	7.0	7.0	4.5
Merged-chr4-117220710-2	chr4	117220210	117221210	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145637, intron 7 of 12)	PB1D7|SINE|Alu	31207.0	NM_001145637	381544.0	Mm.23504	NM_001033774	ENSMUSG00000060268	Armh1	1700012C08Rik|Gm1661|Gm1662|Ncrna00082	armadillo-like helical domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-115372363-1	chr10	115371863	115372863	+	668.0	f0_c57.idr	3' UTR (NM_025780, exon 3 of 3)	3' UTR (NM_025780, exon 3 of 3)	-9862.0	NM_001359472	67226.0	Mm.29647	NM_133683	ENSMUSG00000069520	Tmem19	2810428F02Rik|AW125171	transmembrane protein 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132305166-2	chr7	132304666	132305666	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029935, intron 1 of 7)	intron (NM_029935, intron 1 of 7)	-10498.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150515687-2	chr4	150515197	150516197	+	668.0	f0_balb.idr|f1_balb.idr	intron (NM_001085492, intron 10 of 22)	intron (NM_001085492, intron 10 of 22)	136477.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	1.5	5.0	4.0	5.0	8.0	0.0
Merged-chr7-143629287-2	chr7	143628787	143629787	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153818, intron 1 of 2)	B1_Mus1|SINE|Alu	1217.0	NR_153817	414103.0	Mm.446579	NR_153817		E230032D23Rik	-	RIKEN cDNA E230032D23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35054162-1	chr8	35053662	35054662	+	668.0	f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-88472.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	0.0	9.5	7.0	1.5	4.5	8.5
Merged-chr13-49252913-3	chr13	49252393	49253393	+	668.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1-int|LTR|ERVL-MaLR	-4187.0	NM_028340	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-33246098-1	chr14	33245598	33246598	+	668.0	f0_balb.idr	intron (NM_153800, intron 2 of 10)	RLTR16|LTR|ERVK	29275.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-32333175-4	chr3	32332673	32333673	+	668.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32316.0	NR_027966	67576.0	Mm.435324	NR_027966		4930429B21Rik	-	RIKEN cDNA 4930429B21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121472619-1	chr10	121472119	121473119	+	668.0	f0_balb.idr	intron (NM_138956, intron 1 of 4)	ID_B1|SINE|B4	3631.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	32.0	36.5	44.5	44.0	55.0	57.5
Merged-chr16-91459576-2	chr16	91459076	91460076	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5528.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	9.0	4.5	0.5	3.5	6.0	3.0
Merged-chr1-156029254-1	chr1	156028754	156029754	+	668.0	f1_c57bl6.idr	intron (NM_144791, intron 4 of 6)	intron (NM_144791, intron 4 of 6)	5563.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	52.0	67.5	79.5	39.5	80.0	62.0
Merged-chr18-67279240-2	chr18	67278740	67279740	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9983.0	NM_053261	114663.0	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr2-143838837-1	chr2	143838337	143839337	+	668.0	f0_balb.idr	intron (NM_001291061, intron 5 of 7)	intron (NM_001291061, intron 5 of 7)	24336.0	NM_009751	12075.0	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18936850-2	chr2	18936350	18937350	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	61271.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-36731770-2	chr13	36731270	36732270	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153529, intron 1 of 2)	intron (NM_153529, intron 1 of 2)	2707.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	0.0	0.0	0.0	2.0	5.0	1.0
Merged-chr6-37446198-2	chr6	37445698	37446698	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4050.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101903310-2	chr7	101902810	101903810	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081679, intron 1 of 3)	intron (NM_001081679, intron 1 of 3)	475.0	NM_001282088	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-116425601-1	chr12	116425101	116426101	+	668.0	f0_balb.idr	intron (NM_133762, intron 11 of 28)	RSINE1|SINE|B4	20199.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	1.5	0.0	4.0	1.0	0.0	5.0
Merged-chr11-24079696-2	chr11	24079196	24080196	+	668.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159290)	promoter-TSS (NM_001159290)	-999.0	NM_001159290	14025.0	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71337345-2	chr8	71336774	71337774	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 14 of 39)	intron (NM_001142322, intron 14 of 39)	-29574.0	NM_001145780	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	2.5	0.0	0.0	1.0
Merged-chr18-24150444-1	chr18	24149944	24150944	+	668.0	f0_balb.idr	Intergenic	Intergenic	-28625.0	NM_172625	225280.0	Mm.258973	NM_172625	ENSMUSG00000047989	Ino80c	D030070L09Rik	INO80 complex subunit C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59302924-2	chr11	59302424	59303424	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4006.0	NM_139298	216795.0	Mm.218794	NM_139298	ENSMUSG00000000126	Wnt9a	Wnt14	wingless-type MMTV integration site family, member 9A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9997502-1	chr19	9997002	9998002	+	668.0	f1_balb.idr	intron (NM_011913, intron 1 of 11)	intron (NM_011913, intron 1 of 11)	4131.0	NM_011913	24115.0	Mm.31577	NM_011913	ENSMUSG00000037418	Best1	Bmd|Vmd2|mBest1	bestrophin 1	protein-coding	1.5	5.5	2.5	4.5	1.5	0.5
Merged-chr2-132119013-2	chr2	132118513	132119513	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	26095.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-93503711-2	chr11	93503211	93504211	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361708, intron 5 of 9)	intron (NM_001361708, intron 5 of 9)	382055.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	0.0	0.0	2.0	2.0	2.5	3.5
Merged-chr4-150869943-1	chr4	150869443	150870443	+	668.0	f0_balb.idr	Intergenic	L2|LINE|L2	14873.0	NM_133753	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34769156-2	chr2	34768656	34769656	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-2934.0	NM_001163434	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-49173424-2	chr14	49172924	49173924	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027492, intron 2 of 4)	intron (NM_027492, intron 2 of 4)	1178.0	NM_027492	70646.0	Mm.275688	NM_027492	ENSMUSG00000036282	Naa30	4930487N19Rik|5730533P17Rik|AI447922|AW322455|Nat12	N(alpha)-acetyltransferase 30, NatC catalytic subunit	protein-coding	4.0	12.5	9.0	3.0	1.0	4.5
Merged-chr2-167644812-2	chr2	167644312	167645312	+	668.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145538, exon 5 of 6)	exon (NM_145538, exon 5 of 6)	-12807.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.0	2.0	0.5	0.0	2.0	0.5
Merged-chr4-135918364-2	chr4	135917864	135918864	+	668.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009924, exon 2 of 2)	3' UTR (NM_009924, exon 2 of 2)	-2362.0	NM_024243	71665.0	Mm.439940	NM_024243	ENSMUSG00000028673	Fuca1	0610006A03Rik|9530055J05Rik|Afuc|Fuca	fucosidase, alpha-L- 1, tissue	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84436112-1	chr8	84435612	84436612	+	668.0	f0_balb.idr	intron (NM_001252060, intron 1 of 47)	intron (NM_001252060, intron 1 of 47)	20748.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	5.0	4.0	3.0	3.0	25.5	12.5
Merged-chr19-5635417-1	chr19	5634917	5635917	+	668.0	f1_c57bl6.idr	Intergenic	RMER4A|LTR|ERVK	-2073.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	14.0	0.0	4.0	4.5	0.0	1.5
Merged-chr11-103008114-2	chr11	103007619	103008619	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026551, intron 1 of 4)	intron (NM_026551, intron 1 of 4)	-8198.0	NR_105896	102466988.0		NR_105896	ENSMUSG00000098613	Mir6931	Gm27303|mmu-mir-6931	microRNA 6931	ncRNA	1.5	5.0	5.0	3.5	5.5	8.0
Merged-chr7-90223246-2	chr7	90222746	90223746	+	668.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_183293)	TTS (NM_183293)	42186.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118662836-1	chr14	118662336	118663336	+	668.0	f0_c57.idr	intron (NM_001033336, intron 3 of 30)	MTE2b|LTR|ERVL-MaLR	14095.0	NM_001163675	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-55204241-2	chr18	55203725	55204725	+	668.0	f0_balb.idr|f1_balb.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-211634.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	3.0	16.0	2.5	10.5	41.5	22.5
Merged-chr17-26690548-2	chr17	26690048	26691048	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025272, intron 2 of 3)	intron (NM_025272, intron 2 of 3)	14152.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95847192-1	chr13	95846692	95847692	+	668.0	f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	44730.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	17.0	89.5	42.0	3.5	4.0	25.5
Merged-chr2-93449081-2	chr2	93448582	93449582	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136055, intron 1 of 9)	intron (NM_001136055, intron 1 of 9)	3590.0	NM_001271462	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	12.5	7.5	2.0	8.5	5.5	6.5
Merged-chr17-5607240-2	chr17	5606740	5607740	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	114640.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15374878-1	chr17	15374378	15375378	+	668.0	f1_balb.idr	exon (NM_007865, exon 2 of 11)	exon (NM_007865, exon 2 of 11)	945.0	NM_007865	13388.0	Mm.4875	NM_007865	ENSMUSG00000014773	Dll1	Delta1	delta like canonical Notch ligand 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-83076750-3	chr13	83076275	83077275	+	668.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-378442.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	8.0	0.5	4.5	1.0	10.5	10.5
Merged-chr10-99214615-2	chr10	99214115	99215115	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-48616.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-103426535-2	chr12	103426035	103427035	+	668.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020494)	promoter-TSS (NM_020494)	-668.0	NM_020494	27225.0	Mm.3935	NM_020494	ENSMUSG00000041645	Ddx24	1700055J08Rik|2510027P10Rik|AI649272	DEAD (Asp-Glu-Ala-Asp) box polypeptide 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-72846052-1	chr12	72845552	72846552	+	668.0	f1_balb.idr	Intergenic	Intergenic	71713.0	NM_029444	75801.0	Mm.242892	NM_029444	ENSMUSG00000021098	4930447C04Rik	4921504I02Rik|A930035O15Rik|Six6OS|Six6as|Six6os1	RIKEN cDNA 4930447C04 gene	protein-coding	2.5	0.0	1.0	0.5	3.5	1.0
Merged-chr17-56146054-2	chr17	56145554	56146554	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5711.0	NM_001130456	20359.0	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116644124-2	chr11	116643624	116644624	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10189.0	NM_030206	114886.0	Mm.34598	NM_030206	ENSMUSG00000020810	Cygb	3110001K20Rik|HGb|Staap	cytoglobin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32188722-2	chr16	32188222	32189222	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR18B|LTR|ERVK	8922.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	2.0	0.5	1.0	0.0	0.0	1.5
Merged-chr5-123032605-2	chr5	123032105	123033105	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	14411.0	NM_029112	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102161424-1	chr2	102160924	102161924	+	668.0	f0_balb.idr	intron (NM_178886, intron 1 of 5)	intron (NM_178886, intron 1 of 5)	25036.0	NM_178886	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-72478073-1	chr4	72477573	72478573	+	668.0	f0_balb.idr	Intergenic	Intergenic	276829.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150626148-2	chr4	150625648	150626648	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26026.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25753705-2	chr7	25753205	25754205	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360789, intron 1 of 14)	intron (NM_001360789, intron 1 of 14)	1054.0	NM_144922	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32473838-2	chr16	32473338	32474338	+	668.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009981, exon 9 of 9)	3' UTR (NM_009981, exon 9 of 9)	14041.0	NM_145932	106407.0	Mm.476915	NM_145932	ENSMUSG00000035699	Slc51a	AV001382|AW261577|D630035O19Rik|OSTalpha|Osta	solute carrier family 51, alpha subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-93625190-1	chr7	93624690	93625690	+	668.0	f1_balb.idr	Intergenic	Lx|LINE|L1	-441014.0	NM_001358087	100040298.0	Mm.260904	NM_001358087		Gm15501	EyeLinc5	predicted pseudogene 15501	protein-coding	0.0	0.0	0.0	3.0	3.5	2.0
Merged-chr7-129333824-2	chr7	129333324	129334324	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080963, intron 5 of 6)	C-rich|Low_complexity|Low_complexity	76730.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81853767-1	chr15	81853267	81854267	+	668.0	f1_c57bl6.idr	intron (NM_020507, intron 1 of 1)	intron (NM_020507, intron 1 of 1)	4559.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	0.0	5.5	5.5	0.0	1.0	4.0
Merged-chr13-47213200-2	chr13	47212700	47213700	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 2 of 7)	intron (NM_146042, intron 2 of 7)	19197.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	1.5	12.0	7.0	4.0	8.0	8.0
Merged-chr5-122643183-2	chr5	122642683	122643683	+	668.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011027)	promoter-TSS (NM_011027)	-728.0	NM_001038839	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60753452-1	chr13	60752952	60753952	+	668.0	f1_c57bl6.idr	intron (NM_134062, intron 23 of 26)	B3|SINE|B2	32912.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	15.5	1.0	9.0	1.5	0.0	9.0
Merged-chr12-80083826-2	chr12	80083326	80084326	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29187.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11554298-2	chr11	11553798	11554798	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65032.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	0.0	16.0	6.0	0.5	0.0	1.5
Merged-chr7-110629194-2	chr7	110628694	110629694	+	668.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009627, exon 4 of 4)	3' UTR (NM_009627, exon 4 of 4)	1537.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35886816-1	chr12	35886316	35887316	+	668.0	f1_c57bl6.idr	Intergenic	B3|SINE|B2	-38805.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	5.5	2.5	1.0	0.0	18.5	1.0
Merged-chr1-189806735-1	chr1	189806235	189807235	+	668.0	f0_c57.idr	intron (NM_008976, intron 3 of 18)	ORR1E|LTR|ERVL-MaLR	78467.0	NM_008976	19250.0	Mm.4498	NM_008976	ENSMUSG00000026604	Ptpn14	C130080N23Rik|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding	19.5	18.5	18.5	0.5	0.0	1.5
Merged-chr1-60040054-2	chr1	60039554	60040554	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316694, intron 1 of 10)	B1_Mus1|SINE|Alu	3068.0	NM_001357296	70375.0	Mm.17834	NM_027407	ENSMUSG00000026018	Ica1l	1700030B17Rik|Als2cr15|b2b3465Clo	islet cell autoantigen 1-like	protein-coding	0.0	0.0	2.5	8.5	8.0	0.0
Merged-chr6-38356886-2	chr6	38356386	38357386	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2283.0	NM_028864	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106210518-2	chr8	106210018	106211018	+	668.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145404)	promoter-TSS (NM_145404)	415.0	NM_001007567	66432.0	Mm.269029	NM_001007567	ENSMUSG00000033106	Slc7a6os	2010007L18Rik|2400002F02Rik	solute carrier family 7, member 6 opposite strand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24114689-2	chr16	24114189	24115189	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31999.0	NR_155457	108168278.0	Mm.417246	NR_155457		Gm46545	-	predicted gene, 46545	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-76062590-1	chr18	76062090	76063090	+	668.0	f1_balb.idr	intron (NM_001357506, intron 1 of 2)	intron (NM_001357506, intron 1 of 2)	3264.0	NM_001357506	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	0.0	1.0	0.0	0.0	0.5	0.0
Merged-chr3-88634389-1	chr3	88633889	88634889	+	668.0	f1_c57bl6.idr	intron (NM_001198913, intron 7 of 21)	intron (NM_001198913, intron 7 of 21)	12995.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	2.0	11.5	2.0	1.0	8.5	0.0
Merged-chr12-28632270-1	chr12	28631770	28632770	+	668.0	f1_balb.idr	intron (NM_011300, intron 5 of 6)	intron (NM_011300, intron 5 of 6)	3683.0	NM_011300	20115.0	Mm.279839	NM_011300	ENSMUSG00000061477	Rps7	Mtu|Rps7A|S7	ribosomal protein S7	protein-coding	6.0	1.5	7.5	15.0	3.0	7.5
Merged-chr16-87675868-1	chr16	87675368	87676368	+	668.0	f0_balb.idr	Intergenic	Intergenic	-23086.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105258266-3	chr4	105257792	105258792	+	667.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100945.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	1.0	0.0	2.5	0.0	0.0	3.5
Merged-chr7-25599847-4	chr7	25599363	25600363	+	667.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16029.0	NM_001039243	632778.0	Mm.423112	NM_001039243	ENSMUSG00000074261	Erich4	EG632778|Gm7092|Kseg1	glutamate rich 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-38529949-2	chr5	38529449	38530449	+	667.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_011715, exon 13 of 15)	exon (NM_011715, exon 13 of 15)	-27797.0	NM_145559	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-61592106-2	chr2	61591606	61592606	+	667.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164071)	promoter-TSS (NM_001164071)	-991.0	NR_149324	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96066223-3	chr3	96065677	96066677	+	667.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-7722.0	NM_013841	22365.0	Mm.263185	NM_013841	ENSMUSG00000015747	Vps45	AI462172|AW554165|mVps45	vacuolar protein sorting 45	protein-coding	0.5	7.5	7.0	2.0	5.5	8.5
Merged-chr1-133118357-3	chr1	133117859	133118859	+	667.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-12807.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	15.5	11.0	8.0	0.0	3.0	6.5
Merged-chr11-9433046-3	chr11	9432549	9433549	+	667.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 37 of 61)	intron (NM_178259, intron 37 of 61)	241107.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114907657-3	chr6	114907171	114908171	+	667.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	Lx7|LINE|L1	14150.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55240205-2	chr11	55239705	55240705	+	667.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35865.0	NM_153139	215335.0	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-64202043-2	chr14	64201543	64202543	+	667.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253715, intron 4 of 4)	intron (NM_001253715, intron 4 of 4)	97720.0	NM_028525	73382.0	Mm.481055	NM_028525	ENSMUSG00000021966	Prss52	1700049K14Rik|Tesp3	protease, serine 52	protein-coding	0.0	0.0	0.0	4.0	7.0	0.0
Merged-chr7-110157777-2	chr7	110157277	110158277	+	667.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35718.0	NM_009516	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105358564-2	chr8	105358064	105359064	+	667.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081332, intron 10 of 15)	intron (NM_001081332, intron 10 of 15)	10306.0	NM_001081332	277973.0	Mm.334766	NM_001081332	ENSMUSG00000014786	Slc9a5	Gm696	solute carrier family 9 (sodium/hydrogen exchanger), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18679376-2	chr16	18678876	18679876	+	667.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49438.0	NM_213614	18951.0	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110781974-3	chr5	110781392	110782392	+	667.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1277.0	NM_001025562	56361.0	Mm.23528	NM_019700	ENSMUSG00000029507	Pus1	A730013B20Rik|MPUS1|mPus1p	pseudouridine synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-12389254-3	chr2	12388743	12389743	+	667.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355539, intron 1 of 6)	intron (NM_001355539, intron 1 of 6)	30217.0	NM_001355537	66960.0	Mm.34059	NM_024185	ENSMUSG00000026767	Mindy3	1810041E18Rik|2310047O13Rik|5830410F13Rik|AI447827|AW111958|Fam188a	MINDY lysine 48 deubiquitinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27428921-2	chr2	27428421	27429421	+	667.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1313.0	NM_009500	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-56304369-3	chr14	56303882	56304882	+	667.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42048.0	NM_013542	14939.0	Mm.14874	NM_013542	ENSMUSG00000015437	Gzmb	AI553453|CCP-1/C11|CCP1|Ctla-1|Ctla1|GZB	granzyme B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108719542-3	chr3	108719031	108720031	+	667.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029522, intron 1 of 14)	intron (NM_029522, intron 1 of 14)	2768.0	NM_029522	76123.0	Mm.226941	NM_029522	ENSMUSG00000027883	Gpsm2	6230410J09Rik|LGN|Pins	G-protein signalling modulator 2 (AGS3-like, C. elegans)	protein-coding	0.0	2.0	2.0	0.0	2.0	2.0
Merged-chr16-22564745-2	chr16	22564245	22565245	+	667.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346673, intron 15 of 23)	intron (NM_001346673, intron 15 of 23)	-32561.0	NR_106170	102465887.0		NR_106170	ENSMUSG00000099071	Mir8095	Gm27566|mmu-mir-8095	microRNA 8095	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84206840-2	chr8	84206331	84207331	+	667.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1687.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	18.5	33.0	11.5	12.5	16.5	9.5
Merged-chr14-8346703-2	chr14	8346203	8347203	+	667.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20737.0	NR_151471	102632156.0		NR_151471		2610318M16Rik	-	RIKEN cDNA 2610318M16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53463949-3	chr18	53463488	53464488	+	667.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033281)	promoter-TSS (NM_001033281)	-558.0	NM_001033281	225518.0	Mm.297645	NM_001033281	ENSMUSG00000069378	Prdm6	Gm92|PRISM	PR domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-64189071-2	chr2	64188571	64189571	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-91033.0	NM_001267847	60344.0	Mm.130769	NM_021716	ENSMUSG00000075324	Fign	fi|fidget	fidgetin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-58157853-2	chr2	58157353	58158353	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139200, intron 1 of 7)	intron (NM_139200, intron 1 of 7)	2269.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-14003405-2	chr9	14002905	14003905	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	175689.0	NM_176836	72826.0	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126551914-2	chr8	126551414	126552414	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41522.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29240475-2	chr7	29239975	29240975	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357664, intron 1 of 7)	intron (NM_001357664, intron 1 of 7)	2018.0	NM_001357664	77254.0	Mm.36699	NM_029887	ENSMUSG00000030588	Yif1b	9430029K10Rik|Yip1b	Yip1 interacting factor homolog B (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62452542-2	chr10	62452042	62453042	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-2804.0	NM_181423	338359.0	Mm.235898	NM_181423	ENSMUSG00000020079	Supv3l1	6330443E10Rik	suppressor of var1, 3-like 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-104752789-2	chr12	104752289	104753289	+	667.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148948)	promoter-TSS (NM_148948)	-837.0	NM_148948	192119.0	Mm.21135	NM_148948	ENSMUSG00000041415	Dicer1	1110006F08Rik|D12Ertd7e|mKIAA0928	dicer 1, ribonuclease type III	protein-coding	12.5	14.5	12.5	15.5	25.0	11.0
Merged-chr18-67563124-2	chr18	67562624	67563624	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10403.0	NM_194355	68166.0	Mm.208723	NM_176832	ENSMUSG00000024533	Spire1	6030430B19Rik|AI415299|AU022898|AW550622|Spir-1	spire type actin nucleation factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-149679436-4	chr5	149678881	149679881	+	667.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081204, intron 1 of 14)	intron (NM_001081204, intron 1 of 14)	1124.0	NM_001081204	381694.0	Mm.45060	NM_001081204	ENSMUSG00000051950	B3glct	B3galtl|Gm1057	beta-3-glucosyltransferase	protein-coding	3.0	0.0	0.0	12.5	3.0	2.5
Merged-chr4-9837772-2	chr4	9837272	9838272	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6600.0	NM_013526	242316.0	Mm.302555	NM_013526	ENSMUSG00000051279	Gdf6	BMP-13|BMP13|GDF16	growth differentiation factor 6	protein-coding	0.0	0.0	1.0	0.5	2.5	7.0
Merged-chr4-14827360-2	chr4	14826860	14827860	+	667.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152812)	promoter-TSS (NM_152812)	-773.0	NM_152812	72201.0	Mm.387724	NM_152812	ENSMUSG00000040550	Otud6b	2600013N14Rik|AU015433	OTU domain containing 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64745434-2	chr17	64744934	64745934	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 20 of 21)	ORR1D1|LTR|ERVL-MaLR	-21677.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96513200-2	chr9	96512700	96513700	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-34525.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-16221411-3	chr6	16220909	16221909	+	667.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCa|LINE|L1	500748.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.5	5.5	2.0	12.5	3.5	0.0
Merged-chr3-52197213-2	chr3	52196713	52197713	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-71124.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-94276202-2	chr2	94275702	94276702	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14803.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-17623146-1	chr18	17622646	17623646	+	667.5	f0_balb.idr	Intergenic	Intergenic	-42156.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4442606-2	chr19	4442106	4443106	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045989, intron 1 of 4)	intron (NR_045989, intron 1 of 4)	3047.0	NR_045989	319314.0	Mm.393810	NR_045989	ENSMUSG00000087132	A930001C03Rik	-	RIKEN cDNA A930001C03 gene	ncRNA	1.5	0.0	3.0	3.5	4.0	0.0
Merged-chr5-43948275-2	chr5	43947775	43948775	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33524.0	NM_008009	14181.0	Mm.46053	NM_008009	ENSMUSG00000048373	Fgfbp1	FGF-BP|FGF-BP1|FGFBP-1	fibroblast growth factor binding protein 1	protein-coding	0.0	5.0	0.0	6.5	0.0	5.5
Merged-chr14-100285288-2	chr14	100284788	100285788	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-135492.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-124653020-2	chr4	124652520	124653520	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4626.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135274747-2	chr4	135274247	135275247	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1987.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114838534-2	chr6	114838028	114839028	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 19 of 19)	ORR1D1|LTR|ERVL-MaLR	83293.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11564491-3	chr11	11563983	11564983	+	667.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63355.0	NM_001305143	102631730.0	Mm.159430	NM_001305143	ENSMUSG00000062511	4930512M02Rik	-	RIKEN cDNA 4930512M02 gene	protein-coding	7.0	5.0	2.5	5.5	4.0	2.5
Merged-chr2-159881946-2	chr2	159881446	159882446	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65395.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45534411-2	chr7	45533911	45534911	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_148927, intron 4 of 19)	intron (NM_148927, intron 4 of 19)	8081.0	NM_148927	69217.0	Mm.274158	NM_148927	ENSMUSG00000040428	Plekha4	2410005C22Rik|C88169|Pepp1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding	2.0	0.5	2.5	0.0	4.0	0.0
Merged-chr9-61858056-2	chr9	61857556	61858556	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56454.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123748166-2	chr4	123747666	123748666	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023423, intron 1 of 4)	intron (NM_023423, intron 1 of 4)	2133.0	NM_023423	68050.0	Mm.27903	NM_023423	ENSMUSG00000023075	Akirin1	6330407G11Rik	akirin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19368623-2	chr7	19368123	19369123	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001010836, intron 2 of 12)	intron (NM_001010836, intron 2 of 12)	7407.0	NM_001010836	333654.0	Mm.333640	NM_001010836	ENSMUSG00000040734	Ppp1r13l	AV260376|IASPP|Nkip1|wa3	protein phosphatase 1, regulatory (inhibitor) subunit 13 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55449505-2	chr12	55449005	55450005	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43142.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119967191-2	chr11	119966691	119967691	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037754, intron 3 of 13)	intron (NM_001037754, intron 3 of 13)	24099.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35104366-1	chr17	35103866	35104866	+	667.5	f1_c57bl6.idr	Intergenic	Intergenic	-3934.0	NM_148947	114652.0	Mm.222643	NM_148947	ENSMUSG00000034482	Ly6g5c	G5c|NG33	lymphocyte antigen 6 complex, locus G5C	protein-coding	0.0	0.0	1.0	1.5	10.0	0.0
Merged-chr4-87761749-2	chr4	87761249	87762249	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	44574.0	NM_001286158	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19091529-2	chr3	19091029	19092029	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	71566.0	NM_028840	74252.0	Mm.200383	NM_028840	ENSMUSG00000027599	Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116007369-2	chr11	116006866	116007866	+	667.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_016905)	TTS (NM_016905)	5353.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	0.0	0.0	0.0	8.5	0.0	1.0
Merged-chr7-3705397-2	chr7	3704886	3705886	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029767, intron 3 of 4)	intron (NM_029767, intron 3 of 4)	1345.0	NM_029767	76846.0	Mm.13944	NM_029767	ENSMUSG00000006333	Rps9	3010033P07Rik|AL022771|AL022885	ribosomal protein S9	protein-coding	28.0	57.0	86.5	29.5	29.0	58.0
Merged-chr18-62062848-2	chr18	62062348	62063348	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109773.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122266159-2	chr8	122265620	122266620	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16021.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	0.0	0.0	0.0	3.0	0.0	2.5
Merged-chr5-120481467-2	chr5	120480967	120481967	+	667.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_145565, exon 6 of 8)	exon (NM_145565, exon 6 of 8)	4920.0	NM_145565	231691.0	Mm.28685	NM_145565	ENSMUSG00000029597	Sds	4432411H13Rik|SDH	serine dehydratase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27467886-2	chr15	27467386	27468386	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020332, intron 1 of 11)	intron (NM_020332, intron 1 of 11)	1209.0	NM_020332	11732.0	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-185209992-2	chr1	185209492	185210492	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163754, intron 1 of 34)	MER3|DNA|hAT-Charlie	5824.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	8.0	11.0	8.5	2.0	2.5	3.5
Merged-chr16-23358676-2	chr16	23358176	23359176	+	667.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001252506, exon 7 of 7)	3' UTR (NM_001252506, exon 7 of 7)	68206.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-85393987-2	chr17	85393487	85394487	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028576, intron 5 of 10)	intron (NM_028576, intron 5 of 10)	224409.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117132061-3	chr4	117131606	117132606	+	667.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313916, intron 5 of 14)	intron (NM_001313916, intron 5 of 14)	1857.0	NM_013807	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	3.5	0.0	2.0	3.0	4.5	0.0
Merged-chr3-89752202-2	chr3	89751702	89752702	+	667.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019655, exon 15 of 15)	3' UTR (NM_019655, exon 15 of 15)	12430.0	NM_009602	11444.0	Mm.35088	NM_009602	ENSMUSG00000027950	Chrnb2	Acrb-2|Acrb2|C030030P04Rik|[b]2-nAchR	cholinergic receptor, nicotinic, beta polypeptide 2 (neuronal)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-82674449-2	chr17	82673949	82674949	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	403776.0	NR_045094	100503434.0	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3922202-2	chr11	3921702	3922702	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130458, intron 7 of 9)	intron (NM_001130458, intron 7 of 9)	-7538.0	NM_153142	103710.0	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-92878175-2	chr7	92877675	92878675	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028243, intron 1 of 8)	B4A|SINE|B4	2922.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59176644-2	chr2	59176144	59177144	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	15794.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-55172370-2	chr9	55171870	55172870	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346658, intron 3 of 12)	intron (NM_001346658, intron 3 of 12)	22287.0	NM_001346658	109161.0	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120915110-2	chr11	120914610	120915610	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027745, intron 3 of 18)	ERVL-int|LTR|ERVL	17762.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	0.0	1.0	1.5	0.0	1.0	1.5
Merged-chr19-44333402-2	chr19	44332902	44333902	+	667.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183216)	promoter-TSS (NM_183216)	76.0	NM_183216	329065.0	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172612976-2	chr1	172612476	172613476	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10425.0	NM_001164725	677296.0	Mm.439612	NM_001164725	ENSMUSG00000070504	Fcrl6	FcRH6|mIFGP6|moFcRH6	Fc receptor-like 6	protein-coding	0.0	3.0	2.0	0.0	3.0	1.0
Merged-chr12-85396271-2	chr12	85395771	85396771	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-21554.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35756658-2	chr7	35756158	35757158	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2204.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107646311-3	chr13	107645806	107646806	+	667.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41091.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	2.0	2.0	0.0	9.0	3.5	3.0
Merged-chr11-51578594-3	chr11	51578103	51579103	+	667.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153393, intron 27 of 28)	intron (NM_153393, intron 27 of 28)	-6154.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10759734-4	chr19	10759229	10760229	+	667.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027805, intron 1 of 3)	L2a|LINE|L2	18782.0	NR_027805	403202.0	Mm.34482	NM_207529	ENSMUSG00000067577	A430093F15Rik	Gm674	RIKEN cDNA A430093F15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21721428-3	chr13	21720910	21721910	+	667.399963	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178200)	promoter-TSS (NM_178200)	-634.0	NM_178200	319186.0	Mm.277425	NM_178200	ENSMUSG00000114279	Hist1h2bm	H2b-291b	histone cluster 1, H2bm	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140566159-2	chr5	140565659	140566659	+	667.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1092.0	NM_030022	77998.0	Mm.160040	NM_030022	ENSMUSG00000036586	Grifin	E130101O17Rik	galectin-related inter-fiber protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124512570-2	chr6	124512070	124513070	+	667.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023143)	promoter-TSS (NM_023143)	-51.0	NM_023143	50909.0	Mm.333375	NM_023143	ENSMUSG00000055172	C1ra	AI132558|C1r|mC1rA	complement component 1, r subcomponent A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117149195-2	chr10	117148695	117149695	+	667.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177798)	promoter-TSS (NM_177798)	-721.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99876956-3	chr15	99876470	99877470	+	667.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57D|LTR|ERV1	-1514.0	NM_001113545	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85292573-1	chr1	85292073	85293073	+	667.333313	f1_balb.idr	Intergenic	Intergenic	-22007.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-104565364-3	chr11	104564858	104565858	+	667.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010858, intron 2 of 8)	intron (NM_010858, intron 2 of 8)	-3160.0	NR_130177	100415912.0	Mm.446786	NR_130177		Gm11665	Gm11664	predicted gene 11665	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-159334410-3	chr1	159333919	159334919	+	667.333313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_011931, intron 18 of 19)	RMER1B|Other|Other	-5888.0	NR_028518	100217414.0	Mm.450690	NR_028518	ENSMUSG00000089536	Scarna3a	MBI-114	small Cajal body-specific RNA 3A	ncRNA	0.0	0.0	2.5	2.0	0.0	5.0
Merged-chr13-83730712-3	chr13	83730295	83731295	+	667.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152244, intron 2 of 4)	CpG	-1698.0	NR_152246	320203.0	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik|ECONEXIN|EyeLinc1|Visc-1	RIKEN cDNA C130071C03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43662608-2	chr7	43662108	43663108	+	667.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-2447.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35052458-1	chr9	35051958	35052958	+	667.333313	f1_balb.idr	intron (NM_009178, intron 8 of 10)	intron (NM_009178, intron 8 of 10)	-64270.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	17.0	22.0	15.5	7.5	8.5	6.5
Merged-chr17-78733622-3	chr17	78733124	78734124	+	667.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011500, intron 1 of 17)	intron (NM_011500, intron 1 of 17)	2936.0	NM_011500	268980.0	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	0.5	7.0	1.0	0.0	1.5	0.0
Merged-chr8-116267260-2	chr8	116266760	116267760	+	667.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H1|LTR|ERVL-MaLR	-237755.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34674067-2	chr2	34673567	34674567	+	667.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81165.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51334101-3	chr3	51333637	51334637	+	667.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 1 of 9)	intron (NM_023502, intron 1 of 9)	6507.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-71362592-3	chr10	71362109	71363109	+	667.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027184, intron 1 of 5)	intron (NM_027184, intron 1 of 5)	14846.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32172255-3	chr18	32171756	32172756	+	667.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011946, intron 1 of 16)	intron (NM_011946, intron 1 of 16)	9167.0	NM_011946	26405.0	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-8367081-2	chr5	8366581	8367581	+	667.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	1079.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58663212-3	chr16	58662703	58663703	+	667.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7005.0	NM_007757	12892.0	Mm.291519	NM_007757	ENSMUSG00000022742	Cpox	CPX|Cpo|HCP|cac|nct	coproporphyrinogen oxidase	protein-coding	7.5	1.0	0.0	1.5	0.0	0.0
Merged-chr11-31550874-3	chr11	31550377	31551377	+	667.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	120985.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	8.0	6.0	6.0	0.0	0.0	0.0
Merged-chr4-62499342-2	chr4	62498842	62499842	+	667.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_024257, exon 2 of 2)	exon (NM_024257, exon 2 of 2)	2858.0	NM_024257	72748.0	Mm.41506	NM_024257	ENSMUSG00000038422	Hdhd3	2810435D12Rik	haloacid dehalogenase-like hydrolase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36550042-2	chr16	36549542	36550542	+	667.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013803, intron 1 of 6)	intron (NM_013803, intron 1 of 6)	12092.0	NM_013803	12374.0	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23748089-2	chr13	23747589	23748589	+	667.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175664)	TTS (NM_175664)	1355.0	NM_175664	319178.0	Mm.390567	NM_175664	ENSMUSG00000075031	Hist1h2bb	H2b-143	histone cluster 1, H2bb	protein-coding	16.0	38.0	14.0	11.5	12.0	9.5
Merged-chr11-101470970-2	chr11	101470470	101471470	+	667.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009708, intron 4 of 4)	intron (NM_009708, intron 4 of 4)	2795.0	NM_009708	11858.0	Mm.378883	NM_009708	ENSMUSG00000001313	Rnd2	Arhn|Rohn|rho7	Rho family GTPase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-105401361-2	chr7	105400861	105401861	+	667.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1307.0	NM_001242363	74349.0	Mm.30254	NM_199009	ENSMUSG00000044465	Fam160a2	4632419K20Rik|6530415H11Rik|FHIP	family with sequence similarity 160, member A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8312741-2	chr17	8312162	8313162	+	667.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_134114, intron 1 of 7)	intron (NM_134114, intron 1 of 7)	-1544.0	NR_073374	75060.0	Mm.426530	NR_073374	ENSMUSG00000087478	4930506C21Rik	-	RIKEN cDNA 4930506C21 gene	ncRNA	29.0	22.5	23.5	9.0	46.0	21.5
Merged-chr8-106443786-3	chr8	106443285	106444285	+	667.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28446.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79126557-2	chr15	79126057	79127057	+	667.083313	f1_balb.idr|f1_c57bl6.idr	intron (NM_177461, intron 8 of 15)	MT2B|LTR|ERVL	14694.0	NM_001310581	27660.0	Mm.390827	NM_138581	ENSMUSG00000033029	1700088E04Rik	ESTJ0827E04	RIKEN cDNA 1700088E04 gene	protein-coding	0.0	1.0	0.0	0.0	5.0	6.5
Merged-chr7-101857243-3	chr7	101856713	101857713	+	667.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303239)	promoter-TSS (NM_001303239)	-23.0	NM_001303239	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-185732954-2	chr1	185732454	185733454	+	667.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030555, intron 4 of 6)	Lx5|LINE|L1	195618.0	NR_030555	100124483.0		NR_030555	ENSMUSG00000076976	Mir297c	Mirn297c	microRNA 297c	ncRNA	0.0	1.0	0.0	18.0	0.0	0.0
Merged-chr13-45029757-2	chr13	45029257	45030257	+	667.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-27661.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.0	3.0	0.0	0.0	1.0	0.0
Merged-chr7-139272518-2	chr7	139272019	139273019	+	667.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24037.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	2.0	7.0	4.5	0.5	7.0	1.0
Merged-chr18-20847900-2	chr18	20847400	20848400	+	667.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177038, intron 14 of 28)	RLTR11A|LTR|ERVK	48178.0	NM_029491	75964.0	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-35642462-1	chr11	35641962	35642962	+	667.0	f1_c57bl6.idr	intron (NM_011412, intron 20 of 35)	Lx8|LINE|L1	25646.0	NR_029799	723924.0		NR_029799	ENSMUSG00000065583	Mir218-2	Mirn218-2|mir-218-2	microRNA 218-2	ncRNA	6.5	0.0	1.0	0.0	0.0	1.0
Merged-chr19-34924304-1	chr19	34923804	34924804	+	667.0	f1_c57bl6.idr	intron (NM_183046, intron 1 of 31)	intron (NM_183046, intron 1 of 31)	1946.0	NM_183046	240641.0	Mm.278471	NM_183046	ENSMUSG00000024795	Kif20b	33cex|C330014J10Rik|MPP1|Mphosph1|magoo	kinesin family member 20B	protein-coding	0.5	0.0	1.5	1.5	2.5	3.5
Merged-chr10-75675388-2	chr10	75674888	75675888	+	667.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172549, intron 29 of 36)	intron (NM_172549, intron 29 of 36)	-31380.0	NM_027890	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80132701-2	chr7	80132201	80133201	+	667.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17351.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	10.0	0.0	0.0	10.0	0.0	0.0
Merged-chr10-50125948-2	chr10	50125448	50126448	+	667.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-337182.0	NM_001111268	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-42425044-1	chr8	42424544	42425544	+	667.0	f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	597777.0	NR_045497	69966.0	Mm.416903	NR_045497	ENSMUSG00000102046	2810404M03Rik	-	RIKEN cDNA 2810404M03 gene	ncRNA	0.5	0.0	0.0	0.0	0.0	1.0
Merged-chr17-3086111-2	chr17	3085611	3086611	+	667.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1928.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-16435456-2	chr15	16434956	16435956	+	667.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-342645.0	NM_009869	12565.0	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110890854-2	chr9	110890353	110891353	+	667.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_146228, exon 15 of 27)	exon (NM_146228, exon 15 of 27)	10531.0	NM_001146060	235633.0	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	0.5	0.0	0.5	3.0	0.0	0.0
Merged-chr9-47736764-1	chr9	47736264	47737264	+	667.0	f1_balb.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	81444.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	23.0	52.0	20.0	24.5	49.5	22.5
Merged-chr12-86955758-2	chr12	86955258	86956258	+	667.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289431, intron 2 of 4)	intron (NM_001289431, intron 2 of 4)	8415.0	NM_001289432	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60291456-2	chr10	60290956	60291956	+	667.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146124, intron 1 of 13)	intron (NM_001146124, intron 1 of 13)	6995.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4754792-2	chr16	4754292	4755292	+	667.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010443, intron 1 of 5)	intron (NM_010443, intron 1 of 5)	-2154.0	NM_001357050	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-101957629-1	chr12	101957129	101958129	+	667.0	f0_c57.idr	intron (NM_029705, intron 1 of 10)	intron (NM_029705, intron 1 of 10)	614.0	NM_029705	110616.0	Mm.271914	NM_029705	ENSMUSG00000021189	Atxn3	2210008M02Rik|AI463012|AI647473|ATX3|MJD1|Mjd|Sca3|ataxin-3	ataxin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-75832909-2	chr13	75832409	75833409	+	667.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6976.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	3.5	4.5	6.0	2.0	0.5	4.0
Merged-chr18-68161634-2	chr18	68161134	68162134	+	667.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-66312.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.0	0.0	5.5	0.0	3.0	1.5
Merged-chr8-65260074-2	chr8	65259574	65260574	+	667.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130511.0	NM_001352886	407795.0	Mm.387876	NM_001352886	ENSMUSG00000074300	BC030870	SMIM31	cDNA sequence BC030870	protein-coding	1.5	0.0	0.0	0.0	0.0	1.0
Merged-chr4-46390327-2	chr4	46389827	46390827	+	667.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029086)	promoter-TSS (NM_029086)	-890.0	NM_001347095	74753.0	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88384838-3	chr6	88384343	88385343	+	667.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023060, intron 1 of 6)	intron (NM_023060, intron 1 of 6)	61696.0	NM_023060	65967.0	Mm.333237	NM_023060	ENSMUSG00000033216	Eefsec	Selb|mSelB|sec	eukaryotic elongation factor, selenocysteine-tRNA-specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39615597-1	chr1	39615097	39616097	+	667.0	f0_balb.idr	Intergenic	(GGA)n|Simple_repeat|Simple_repeat	35585.0	NM_170597	263764.0	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-103083420-2	chr10	103082920	103083920	+	667.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163559, intron 23 of 25)	L1_Mus4|LINE|L1	-54643.0	NM_172553	216285.0	Mm.19287	NM_172553	ENSMUSG00000036602	Alx1	AI314867|C130005I02|Cart1	ALX homeobox 1	protein-coding	1.5	0.0	0.0	1.0	0.0	0.0
Merged-chr19-44581369-1	chr19	44580869	44581869	+	667.0	f1_c57bl6.idr	Intergenic	Intergenic	18515.0	NM_176958	319594.0	Mm.145278	NM_176958	ENSMUSG00000036450	Hif1an	2310046M24Rik|A830014H24Rik|FIH|FIH1	hypoxia-inducible factor 1, alpha subunit inhibitor	protein-coding	0.0	5.0	4.0	0.0	0.0	0.0
Merged-chr12-51939363-2	chr12	51938863	51939863	+	667.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177171, intron 12 of 35)	intron (NM_177171, intron 12 of 35)	31958.0	NM_177171	320487.0	Mm.131941	NM_177171	ENSMUSG00000035181	Heatr5a	C230081H03Rik|D930036F22Rik|mKIAA1316	HEAT repeat containing 5A	protein-coding	29.0	42.0	28.5	56.5	40.5	28.0
Merged-chr9-27197256-2	chr9	27196756	27197756	+	667.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-41835.0	NM_023277	83964.0	Mm.28770	NM_023277	ENSMUSG00000031990	Jam3	1110002N23Rik|JAM-3|JAM-C|Jcam3	junction adhesion molecule 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38574977-2	chr2	38574477	38575477	+	667.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021606, intron 7 of 9)	intron (NM_021606, intron 7 of 9)	63101.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72409435-2	chr6	72408935	72409935	+	667.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-4873.0	NM_019802	56316.0	Mm.19937	NM_019802	ENSMUSG00000053460	Ggcx	-	gamma-glutamyl carboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90474207-2	chr2	90473707	90474707	+	667.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 2 of 23)	intron (NM_008982, intron 2 of 23)	4967.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7871114-2	chr10	7870614	7871614	+	667.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172785)	TTS (NM_172785)	34733.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78525776-2	chr9	78525276	78526276	+	667.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR51A_Mm|LTR|ERVK?	-44052.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-52420498-2	chr10	52419998	52420998	+	667.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030250, intron 1 of 4)	intron (NM_030250, intron 1 of 4)	2951.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-72926581-2	chr11	72926081	72927081	+	667.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001045536, exon 55 of 55)	3' UTR (NM_001045536, exon 55 of 55)	-34588.0	NM_016745	53313.0	Mm.6306	NM_016745	ENSMUSG00000020788	Atp2a3	SERCA3b|Serca3	ATPase, Ca++ transporting, ubiquitous	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116266258-2	chr6	116265758	116266758	+	667.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290339)	promoter-TSS (NM_001290339)	-274.0	NM_001290339	67492.0	Mm.272772	NM_001081317	ENSMUSG00000042213	Zfand4	Anubl1	zinc finger, AN1-type domain 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76079866-2	chr15	76079366	76080366	+	667.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356629, intron 1 of 12)	intron (NM_001356629, intron 1 of 12)	1004.0	NM_001164600	67959.0	Mm.29965	NM_028364	ENSMUSG00000002524	Puf60	2410104I19Rik|2810454F19Rik|SIAHBP1	poly-U binding splicing factor 60	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108796339-2	chr12	108795839	108796839	+	667.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009537, intron 1 of 4)	intron (NM_009537, intron 1 of 4)	3028.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21929468-2	chr9	21928968	21929968	+	667.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164614, exon 3 of 13)	exon (NM_001164614, exon 3 of 13)	-1933.0	NM_001253870	235043.0	Mm.253329	NM_178577	ENSMUSG00000040883	Tmem205	-	transmembrane protein 205	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10602649-2	chr19	10602149	10603149	+	667.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145496, intron 1 of 16)	intron (NM_145496, intron 1 of 16)	1609.0	NM_145496	225913.0	Mm.374868	NM_145496	ENSMUSG00000034371	Tkfc	BC021917|Dak	triokinase, FMN cyclase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-70838652-2	chr6	70838152	70839152	+	667.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-5863.0	NM_010121	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21171797-1	chr13	21171297	21172297	+	667.0	f1_balb.idr	Intergenic	Intergenic	-8134.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	3.5	1.0	1.5	3.5	2.0	2.0
Merged-chr6-91516528-2	chr6	91516028	91517028	+	667.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009531)	promoter-TSS (NM_009531)	493.0	NM_026309	67678.0	Mm.246693	NM_026309	ENSMUSG00000034192	Lsm3	1010001J12Rik|2610005D18Rik|6030401D18Rik|SMX4|USS2	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-70847165-1	chr13	70846665	70847665	+	667.0	f0_balb.idr	Intergenic	Intergenic	-5354.0	NR_137640	271127.0	Mm.115970	NM_172053	ENSMUSG00000049538	Adamts16	-	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19184518-2	chr10	19184018	19185018	+	667.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038022, intron 1 of 1)	RMER13B|LTR|ERVK	17280.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35213995-2	chr17	35213495	35214495	+	667.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-8644.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125850016-1	chr8	125849516	125850516	+	667.0	f0_balb.idr	intron (NM_175561, intron 15 of 33)	intron (NM_175561, intron 15 of 33)	-47898.0	NR_155422	102632990.0	Mm.429446	NR_155422		A730098A19Rik	-	RIKEN cDNA A730098A19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-11003206-1	chr15	11002706	11003706	+	667.0	f0_balb.idr	intron (NM_053077, intron 2 of 6)	intron (NM_053077, intron 2 of 6)	2485.0	NM_053077	22293.0	Mm.138278	NM_053077	ENSMUSG00000022243	Slc45a2	Aim-1|Aim1|Dbr|Matp|Oca4|blanc-sale|bls|uw	solute carrier family 45, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-24249523-1	chr6	24249023	24250023	+	667.0	f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-81431.0	NM_019481	55961.0	Mm.19299	NM_019481	ENSMUSG00000029700	Slc13a1	AI314066|AI987826|NaSi-1|Nas1	solute carrier family 13 (sodium/sulfate symporters), member 1	protein-coding	1.5	0.5	0.0	0.0	0.0	0.0
Merged-chr1-156466533-1	chr1	156466033	156467033	+	667.0	f1_c57bl6.idr	intron (NM_009230, intron 2 of 15)	B3|SINE|B2	7795.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	11.0	19.5	26.0	38.5	59.5	46.5
Merged-chr10-11216913-2	chr10	11216413	11217413	+	667.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-64417.0	NM_027968	71865.0	Mm.276229	NM_027968	ENSMUSG00000047648	Fbxo30	1700026A16Rik|MUSA1	F-box protein 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8669352-2	chr3	8668852	8669852	+	667.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-2314.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80098597-2	chr7	80098097	80099097	+	667.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173011, intron 5 of 10)	MLT1K|LTR|ERVL-MaLR	16753.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	1.5	0.5	0.0	1.5	1.0	0.0
Merged-chr5-90759493-1	chr5	90758993	90759993	+	667.0	f0_balb.idr	exon (NM_009141, exon 1 of 4)	exon (NM_009141, exon 1 of 4)	195.0	NM_009141	20311.0	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	1.5	15.0	0.0	0.0	0.0	0.0
Merged-chr7-122249506-2	chr7	122249006	122250006	+	667.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30010.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69796488-1	chr11	69795988	69796988	+	667.0	f1_c57bl6.idr	promoter-TSS (NM_009601)	promoter-TSS (NM_009601)	-551.0	NM_009601	11443.0	Mm.86425	NM_009601	ENSMUSG00000041189	Chrnb1	Achr-2|Acrb	cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150034602-2	chr4	150034102	150035102	+	667.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25579.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105778253-2	chr1	105777753	105778753	+	667.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger5|DNA|TcMar-Tigger	-2470.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72713504-2	chr8	72713004	72714004	+	667.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_176940, exon 19 of 19)	3' UTR (NM_176940, exon 19 of 19)	-9766.0	NM_001113248	20467.0	Mm.2137	NM_009188	ENSMUSG00000031622	Sin3b	2810430C10Rik	transcriptional regulator, SIN3B (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55480658-1	chr4	55480158	55481158	+	667.0	f1_balb.idr	Intergenic	CpG	51817.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.0	6.5	2.0	1.0	0.0	3.0
Merged-chr4-53186378-2	chr4	53185878	53186878	+	667.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-26483.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96198488-2	chr3	96197988	96198988	+	667.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026975)	promoter-TSS (NM_026975)	-902.0	NM_026975	69168.0	Mm.104531	NM_026975	ENSMUSG00000015943	Bola1	1810037G04Rik	bolA-like 1 (E. coli)	protein-coding	0.0	4.0	1.0	6.0	0.0	0.0
Merged-chr2-31087203-3	chr2	31086695	31087695	+	666.955566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 4 of 15)	intron (NM_001355105, intron 4 of 15)	9305.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80758946-2	chr7	80758453	80759453	+	666.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 8 of 37)	B1_Mur2|SINE|Alu	44378.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	4.5	4.0	11.5	4.0	19.0	15.0
Merged-chr2-166026091-3	chr2	166025564	166026564	+	666.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	MTE2a|LTR|ERVL-MaLR	33427.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138856666-4	chr4	138856161	138857161	+	666.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122954, intron 1 of 5)	ORR1D2|LTR|ERVL-MaLR	6808.0	NM_001122954	18784.0	Mm.486532	NM_011110	ENSMUSG00000041193	Pla2g5	PLA2|sPLA2	phospholipase A2, group V	protein-coding	2.5	8.5	2.0	2.0	0.0	0.0
Merged-chr8-70866749-4	chr8	70866356	70867356	+	666.875	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6634.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	6.0	6.5	2.5	0.0	6.5	3.5
Merged-chr2-22784384-2	chr2	22783884	22784884	+	666.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	10057.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-94590871-2	chr15	94590371	94591371	+	666.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1047.0	NM_008971	19230.0	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96034342-2	chr11	96033834	96034834	+	666.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033568)	promoter-TSS (NM_033568)	-551.0	NM_033568	27681.0	Mm.372235	NM_033568	ENSMUSG00000006058	Snf8	D11Moh34	SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)	protein-coding	7.0	11.0	20.0	6.5	10.0	7.5
Merged-chr4-141853527-4	chr4	141853076	141854076	+	666.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	-7217.0	NM_001033875	76701.0	Mm.489680	NM_001033875	ENSMUSG00000062478	Ctrc	1810044E12Rik	chymotrypsin C (caldecrin)	protein-coding	0.0	1.5	7.0	0.0	2.0	6.0
Merged-chr18-55398478-4	chr18	55397972	55398972	+	666.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER34|LTR|ERV1	-405881.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141218402-2	chr4	141217902	141218902	+	666.8000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081174, intron 4 of 5)	MIR3|SINE|MIR	4446.0	NM_001081174	76166.0	Mm.271064	NM_001081174	ENSMUSG00000073733	Rsg1	6330545A04Rik|Gm723|b2b2804Clo|b2b2827Clo	REM2 and RAB-like small GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-78988408-3	chr2	78987915	78988915	+	666.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	118737.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8855427-2	chr4	8854927	8855927	+	666.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001277149, exon 31 of 38)	exon (NM_001277149, exon 31 of 38)	104103.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30861225-2	chr16	30860725	30861725	+	666.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	220207.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86574635-2	chr11	86574135	86575135	+	666.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	9523.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78537019-2	chr11	78536519	78537519	+	666.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159392)	promoter-TSS (NM_001159392)	658.0	NM_018854	55978.0	Mm.358671	NM_018854	ENSMUSG00000001105	Ift20	0610009H04Rik|AU015496|mIFT20	intraflagellar transport 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6354178-2	chr4	6353670	6354670	+	666.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11510.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	8.0	15.0	12.0	10.0	18.5	8.0
Merged-chr19-20362369-3	chr19	20361863	20362863	+	666.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28308.0	NM_010730	16952.0	Mm.248360	NM_010730	ENSMUSG00000024659	Anxa1	Anx-1|Anx-A1|C430014K04Rik|Lpc-1|Lpc1	annexin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41238817-2	chr13	41238317	41239317	+	666.700012	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAA)n|Simple_repeat|Simple_repeat	-11027.0	NM_001135577	108934.0	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38197450-3	chr16	38196938	38197938	+	666.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 7 of 11)	intron (NM_001347232, intron 7 of 11)	97386.0	NM_010936	18171.0	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55719917-3	chr19	55719427	55720427	+	666.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17723.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0.0	7.5	2.0	1.5	12.5	1.0
Merged-chr17-35534457-2	chr17	35533957	35534957	+	666.666687	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_020576, exon 2 of 2)	3' UTR (NM_020576, exon 2 of 2)	1256.0	NM_020576	57390.0	Mm.34201	NM_020576	ENSMUSG00000024409	Psors1c2	AI448740|Pcg|SPR1	psoriasis susceptibility 1 candidate 2 (human)	protein-coding	4.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-61454610-3	chr2	61454099	61455099	+	666.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123987.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139704262-2	chr5	139703762	139704762	+	666.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	32071.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	0.0	2.5	2.5	0.0	5.5	1.5
Merged-chr18-62054195-1	chr18	62053695	62054695	+	666.666687	f0_balb.idr	Intergenic	Intergenic	101120.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	11.0	9.0	7.0	7.0	24.0	9.0
Merged-chr6-125490102-1	chr6	125489602	125490602	+	666.666687	f0_balb.idr	intron (NM_007657, intron 1 of 7)	intron (NM_007657, intron 1 of 7)	4658.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	0.0	1.0	0.0	7.0	2.5	0.5
Merged-chr1-170565058-3	chr1	170564549	170565549	+	666.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 1 of 9)	intron (NM_001109985, intron 1 of 9)	-7939.0	NR_154593	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16366417-2	chr7	16365917	16366917	+	666.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019748, intron 5 of 8)	intron (NM_019748, intron 5 of 8)	21479.0	NM_001285892	56459.0	Mm.258530	NM_019748	ENSMUSG00000052833	Sae1	2400010M20Rik|2610044L12Rik|AL033372|AOS1|AW743391|D7Ertd177e|HSPC140|Sua1|Uble1a	SUMO1 activating enzyme subunit 1	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr5-139370262-4	chr5	139369786	139370786	+	666.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029768)	promoter-TSS (NR_029768)	-541.0	NR_029768	723898.0		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-143954649-2	chr1	143954149	143955149	+	666.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	49500.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114636443-4	chr11	114635944	114636944	+	666.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32099.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109476845-4	chr3	109476371	109477371	+	666.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	-97136.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	8.0	15.0	7.5	10.5	16.5	11.0
Merged-chr5-92509859-3	chr5	92509370	92510370	+	666.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4213.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-112060134-4	chr10	112059632	112060632	+	666.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027018)	promoter-TSS (NM_027018)	-57.0	NM_027018	69286.0	Mm.47058	NM_027018	ENSMUSG00000020213	Glipr1l1	1700011E04Rik	GLI pathogenesis-related 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23379084-2	chr16	23378584	23379584	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-50049.0	NM_001004151	239766.0	Mm.208751	NM_001004151	ENSMUSG00000033383	Rtp1	Gm1766|Gm604	receptor transporter protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56810984-2	chr19	56810484	56811484	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_170757, intron 1 of 14)	L1MA9|LINE|L1	2699.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-53461836-2	chr3	53461336	53462336	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172501, intron 2 of 6)	intron (NM_172501, intron 2 of 6)	1422.0	NM_172501	212114.0	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-17023524-2	chr7	17023024	17024024	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011155, intron 1 of 12)	intron (NM_011155, intron 1 of 12)	4390.0	NM_011155	19060.0	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	1.5	0.0	2.0	0.0	0.0	1.5
Merged-chr7-99137695-2	chr7	99137210	99138210	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 1 of 14)	PB1D9|SINE|Alu	3434.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	2.0	2.0	4.5	2.5	10.5	4.5
Merged-chr1-6979312-2	chr1	6978812	6979812	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-109608.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127272750-2	chr2	127272250	127273250	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139308, intron 1 of 7)	BC1_Mm|scRNA|scRNA	2521.0	NM_139308	99138.0	Mm.41271	NM_139308	ENSMUSG00000027367	Stard7	AI852671|AL022671|AW544915	START domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-19927376-2	chr11	19926865	19927865	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	2923.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	0.5	1.0	1.0	9.0	4.5	3.5
Merged-chr15-103346485-2	chr15	103345985	103346985	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001314041, intron 29 of 30)	intron (NM_001314041, intron 29 of 30)	4040.0	NR_105928	102466775.0		NR_105928	ENSMUSG00000098419	Mir6963	Gm27724|mmu-mir-6963	microRNA 6963	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82930343-2	chr11	82929843	82930843	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178680, intron 13 of 19)	(CCCCG)n|Simple_repeat|Simple_repeat	19090.0	NM_178680	217012.0	Mm.295205	NM_178680	ENSMUSG00000018845	Unc45b	AA445617|Cmya4|D230041A13Rik|Unc45	unc-45 myosin chaperone B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108720178-2	chr6	108719678	108720678	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59244.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	1.0	5.0	6.0	1.0	4.5	9.5
Merged-chr3-90627611-2	chr3	90627111	90628111	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	14717.0	NM_011313	20200.0	Mm.100144	NM_011313	ENSMUSG00000001025	S100a6	2A9|5B10|CALCYCLIN|Cacy|PRA	S100 calcium binding protein A6 (calcyclin)	protein-coding	6.5	17.0	10.0	9.0	11.5	6.5
Merged-chr15-58207693-2	chr15	58207193	58208193	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026346, intron 2 of 8)	B2_Mm2|SINE|B2	7199.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-69241707-2	chr14	69241207	69242207	+	666.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026331)	TTS (NM_026331)	43396.0	NM_026331	67712.0	Mm.293635	NM_026331	ENSMUSG00000034248	Slc25a37	1700020E22Rik|4930513O14Rik|4930526G11Rik|AI848481|C330015G08Rik|Mfrn|Mfrn1|Mscp|frascati|mitoferrin	solute carrier family 25, member 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-49502261-2	chr18	49501761	49502761	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-21028.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-4043151-2	chr10	4042651	4043651	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 17 of 27)	intron (NM_001170785, intron 17 of 27)	70076.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	17.5	4.0	4.0	1.0	1.5	1.0
Merged-chr15-95772026-2	chr15	95771526	95772526	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18817.0	NM_175344	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46897509-2	chr8	46897009	46898009	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-89378.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-157532750-2	chr3	157532250	157533250	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152231, intron 1 of 1)	L1MEf|LINE|L1	1340.0	NR_152231	381498.0	Mm.402095	NR_152231	ENSMUSG00000105834	4930592C13Rik	Gm1657|Gm43159	RIKEN cDNA 4930592C13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17363054-2	chr6	17362554	17363554	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55414.0	NM_001243064	12389.0	Mm.28278	NM_007616	ENSMUSG00000007655	Cav1	Cav|Cav-1	caveolin 1, caveolae protein	protein-coding	0.0	0.0	0.0	2.0	0.0	3.0
Merged-chr4-88552821-2	chr4	88552321	88553321	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	5424.0	NM_206870	242517.0	Mm.377261	NM_206870	ENSMUSG00000096011	Ifna15	Gm12597|Ifnaa|MuIFN-alpha-A	interferon alpha 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-92400359-2	chr17	92399859	92400859	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-798658.0	NM_001315503	11516.0	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128551705-2	chr10	128551212	128552212	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B1|LTR|ERVL	-2544.0	NM_018860	67945.0	Mm.290786	NM_018860	ENSMUSG00000093674	Rpl41	1810055P16Rik|2210411K19Rik	ribosomal protein L41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11474004-3	chr8	11473491	11474491	+	666.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-3938.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88869539-2	chr4	88869039	88870039	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	10662.0	NM_177348	230405.0	Mm.246593	NM_177348	ENSMUSG00000045364	Ifne	Ifn-tau-1|Ifne1|Ifnt1|Infe1	interferon epsilon	protein-coding	2.5	0.0	0.0	2.5	0.0	0.0
Merged-chr17-7878346-2	chr17	7877846	7878846	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47654.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103146297-1	chr2	103145797	103146797	+	666.5	f0_balb.idr	Intergenic	MTEb|LTR|ERVL-MaLR	72622.0	NM_019735	56369.0	Mm.24772	NM_019735	ENSMUSG00000010911	Apip	APIP2|CGI-29|Mmrp19	APAF1 interacting protein	protein-coding	2.0	0.0	0.5	6.0	0.0	1.0
Merged-chr10-23160212-2	chr10	23159712	23160712	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010167, intron 5 of 18)	intron (NM_010167, intron 5 of 18)	189678.0	NM_001347372	14051.0	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97775550-2	chr15	97775050	97776050	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7884.0	NM_001357630	223864.0	Mm.24028	NM_144850	ENSMUSG00000022469	Rapgef3	2310016P22Rik|9330170P05Rik|Epac|Epac1	Rap guanine nucleotide exchange factor (GEF) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54702850-2	chr13	54702350	54703350	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033364, intron 1 of 31)	intron (NM_001033364, intron 1 of 31)	1387.0	NM_001033364	268663.0	Mm.315382	NM_001033364	ENSMUSG00000034918	Cdhr2	Gm624|PC-LKC|Pcdh24	cadherin-related family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50364117-2	chr15	50363617	50364617	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	524932.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46011469-2	chr8	46010969	46011969	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026278, intron 2 of 8)	intron (NM_026278, intron 2 of 8)	867.0	NM_026278	67620.0	Mm.383914	NM_026278	ENSMUSG00000031637	Lrp2bp	1700113N17Rik|2310006J04Rik|4930479L12Rik|MegBP	Lrp2 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-83365800-2	chr9	83365300	83366300	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-65747.0	NR_102437	100039186.0	Mm.212721	NR_102437	ENSMUSG00000099718	Gm2087	-	predicted gene 2087	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131379691-2	chr1	131379190	131380190	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 4 of 22)	B3|SINE|B2	-100127.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-64917275-2	chr14	64916775	64917775	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 1 of 9)	intron (NM_177338, intron 1 of 9)	32582.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	0.5	17.0	10.0	1.5	8.0	5.0
Merged-chr2-36212439-2	chr2	36211939	36212939	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17987.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40726316-1	chr19	40725816	40726816	+	666.5	f1_c57bl6.idr	intron (NM_001304721, intron 6 of 9)	intron (NM_001304721, intron 6 of 9)	66546.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	4.5	0.0	5.0	4.0	5.0	2.5
Merged-chr5-32190359-2	chr5	32189859	32190859	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42349.0	NM_030072	665270.0	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	0.0	0.0	0.0	15.5	0.0	0.0
Merged-chr7-63943933-2	chr7	63943426	63944426	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-5011.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0.0	7.5	1.0	0.0	5.5	1.5
Merged-chr1-131083294-2	chr1	131082794	131083794	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	14549.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	1.5	21.0	10.5	10.0	26.0	13.5
Merged-chr5-121216182-2	chr5	121215682	121216682	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4037.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	3.5	3.0	2.5	0.0	4.0	1.5
Merged-chr19-16774061-2	chr19	16773561	16774561	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173028, intron 1 of 71)	intron (NM_173028, intron 1 of 71)	6872.0	NM_173028	271564.0	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117307699-2	chr8	117307199	117308199	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-41471.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118112544-2	chr10	118112044	118113044	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29243.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0.0	1.0	0.0	2.5	9.5	0.0
Merged-chr11-70451386-2	chr11	70450886	70451886	+	666.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025397)	promoter-TSS (NM_025397)	-545.0	NM_025397	66172.0	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98841089-2	chr7	98840589	98841589	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285794, intron 2 of 5)	intron (NM_001285794, intron 2 of 5)	2244.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	1.0	0.0	0.0	0.0	0.0	1.0
Merged-chr7-19710700-2	chr7	19710200	19711200	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109748, intron 5 of 8)	intron (NM_001109748, intron 5 of 8)	4729.0	NM_001109748	53333.0	Mm.61682	NM_016871	ENSMUSG00000002984	Tomm40	AW539759|Mom35|Tom40	translocase of outer mitochondrial membrane 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32711384-2	chr2	32710839	32711839	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_130860, intron 2 of 6)	B1_Mur4|SINE|Alu	1445.0	NM_130860	107951.0	Mm.27557	NM_130860	ENSMUSG00000009555	Cdk9	PITALRE	cyclin-dependent kinase 9 (CDC2-related kinase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131069132-2	chr1	131068631	131069631	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	RMER6-int|LTR|ERVK	28712.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	2.5	12.5	13.0	1.5	1.5	5.0
Merged-chr10-17925343-2	chr10	17924864	17925864	+	666.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001033432, intron 1 of 3)	intron (NM_001033432, intron 1 of 3)	22703.0	NM_001033432	380629.0	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	0.5	0.0	0.0	0.0	3.0	0.0
Merged-chr15-52510386-3	chr15	52509868	52510868	+	666.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-202077.0	NM_027212	69790.0	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115141060-2	chr11	115140532	115141532	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163753, intron 1 of 8)	ORR1A1|LTR|ERVL-MaLR	-7040.0	NM_145634	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67221329-2	chr7	67220829	67221829	+	666.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_131043)	TTS (NR_131043)	1129.0	NR_131044	76628.0	Mm.384589	NR_131043	ENSMUSG00000097527	1700112J16Rik	-	RIKEN cDNA 1700112J16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31728292-2	chr5	31727792	31728792	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181281, intron 2 of 10)	intron (NM_181281, intron 2 of 10)	30242.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25150850-2	chr12	25150347	25151347	+	666.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21673.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	8.0	25.5	37.5	8.0	11.5	15.0
Merged-chr4-108634939-2	chr4	108634439	108635439	+	666.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177045)	TTS (NM_177045)	14983.0	NM_177045	319965.0	Mm.151129	NM_177045	ENSMUSG00000028582	Cc2d1b	A830039B04Rik|Freud2	coiled-coil and C2 domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83519744-2	chr15	83519244	83520244	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1270.0	NM_001357953	319953.0	Mm.235007	NM_178869	ENSMUSG00000022442	Ttll1	6330444E16Rik|AV014541	tubulin tyrosine ligase-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31253737-2	chr5	31253237	31254237	+	666.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027221)	TTS (NM_027221)	2031.0	NM_027221	69815.0	Mm.389609	NM_027221	ENSMUSG00000029149	Krtcap3	2010001C09Rik|AW321088|Kcp3	keratinocyte associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81477001-2	chr10	81476501	81477501	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176954, intron 1 of 11)	L1MB1|LINE|L1	-2157.0	NM_001311126	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95448749-2	chr9	95448249	95449249	+	666.416687	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	-41479.0	NM_018763	54371.0	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167841847-2	chr2	167841347	167842347	+	666.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90480.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64110518-2	chr13	64110022	64111022	+	666.333374	f0_c57.idr|f1_c57bl6.idr	intron (NM_001001321, intron 6 of 11)	intron (NM_001001321, intron 6 of 11)	18808.0	NM_001001321	70484.0	Mm.133731	NM_001001321	ENSMUSG00000033114	Slc35d2	5730408I21Rik|SQV7L|UGTrel8|hfrc|mUGTrel8	solute carrier family 35, member D2	protein-coding	6.0	4.5	8.5	0.0	4.0	1.0
Merged-chr5-113632557-2	chr5	113632057	113633057	+	666.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	MLTR18D_MM|LTR|ERVK	11046.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-5410555-3	chr12	5410058	5411058	+	666.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015579, intron 1 of 1)	intron (NR_015579, intron 1 of 1)	34056.0	NR_015579	72669.0	Mm.10434	NM_028318		2810032G03Rik	AI461720	RIKEN cDNA 2810032G03 gene	ncRNA	11.5	0.0	2.5	0.0	2.0	4.5
Merged-chr4-108281686-2	chr4	108281186	108282186	+	666.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033634, intron 1 of 13)	intron (NM_001033634, intron 1 of 13)	19404.0	NM_001033634	414872.0	Mm.426241	NM_001033634	ENSMUSG00000034636	Zyg11b	1110046I03Rik|2810482G21Rik|D4Mgi23|Gm431|mKIAA1730	zyg-ll family member B, cell cycle regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18205330-3	chr2	18204816	18205816	+	666.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010804, intron 17 of 22)	intron (NM_010804, intron 17 of 22)	140731.0	NM_001252561	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61716968-2	chr11	61716468	61717468	+	666.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033227, intron 2 of 15)	intron (NM_001033227, intron 2 of 15)	3831.0	NM_001033227	109342.0	Mm.441070	NM_001033227	ENSMUSG00000042371	Slc5a10	C330021F16Rik|SGLT5	solute carrier family 5 (sodium/glucose cotransporter), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78710140-3	chr11	78709653	78710653	+	666.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12728.0	NM_008702	18099.0	Mm.9001	NM_008702	ENSMUSG00000017376	Nlk	AI194375	nemo like kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-41599806-3	chr7	41599314	41600314	+	666.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33717.0	NM_001360675	67607.0	Mm.384626	NM_023363	ENSMUSG00000074165	Zfp788	2810426N06Rik|AI256342|AI605193	zinc finger protein 788	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-107990085-3	chr10	107989521	107990521	+	666.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43376.0	NR_131147	628877.0	Mm.363120	NR_131147	ENSMUSG00000112910	Gm29685	-	predicted gene, 29685	ncRNA	11.0	0.0	2.0	0.0	7.0	2.5
Merged-chr6-50221117-3	chr6	50220632	50221632	+	666.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018769, intron 6 of 9)	intron (NM_018769, intron 6 of 9)	40637.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64107424-2	chr15	64106925	64107925	+	666.275024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 24 of 28)	B1_Mus1|SINE|Alu	-46977.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	3.0	0.0	0.0	0.0	3.5	0.5
Merged-chr5-9015557-3	chr5	9015047	9016047	+	666.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-18401.0	NM_023733	74114.0	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60176223-2	chr13	60175723	60176723	+	666.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_008086, exon 1 of 1)	exon (NM_008086, exon 1 of 1)	1312.0	NM_008086	14451.0	Mm.22701	NM_008086	ENSMUSG00000052957	Gas1	AW554192|Gas-1	growth arrest specific 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-79660094-2	chr17	79659594	79660594	+	666.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_201361, intron 5 of 10)	L1_Mus4|LINE|L1	45194.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17724731-2	chr16	17724231	17725231	+	666.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TGG)n|Simple_repeat|Simple_repeat	-1784.0	NM_001040683	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-118614807-3	chr5	118614335	118615335	+	666.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	54116.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.0	0.0	7.5	0.0	0.0	0.0
Merged-chr17-34893249-2	chr17	34892749	34893749	+	666.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1310.0	NM_198886	193736.0	Mm.161119	NM_198886	ENSMUSG00000049823	Zbtb12	BC020447|Bat-9|Bat9|G10|NG35	zinc finger and BTB domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-114793548-2	chr9	114793049	114794049	+	666.25	f0_c57.idr|f1_c57bl6.idr	intron (NM_027294, intron 2 of 3)	intron (NM_027294, intron 2 of 3)	-11556.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	25.5	82.0	59.0	34.0	42.5	45.0
Merged-chr13-4279421-2	chr13	4278924	4279924	+	666.25	f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_013777)	promoter-TSS (NM_013777)	-25.0	NM_013777	622402.0	Mm.27447	NM_013777	ENSMUSG00000021211	Akr1c12	AI266976|Akra	aldo-keto reductase family 1, member C12	protein-coding	14.5	5.5	4.5	3.0	5.0	3.0
Merged-chr12-104067073-2	chr12	104066575	104067575	+	666.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10884.0	NR_002861	321018.0	Mm.297023	NR_002861		Serpina4-ps1	KALps|Klst	serine (or cysteine) peptidase inhibitor, clade A, member 4, pseudogene 1	pseudo	24.0	44.0	31.0	1.5	17.0	8.0
Merged-chr13-5868970-3	chr13	5868448	5869448	+	666.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011803, exon 4 of 4)	3' UTR (NM_011803, exon 4 of 4)	7459.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25771224-3	chr7	25770723	25771723	+	666.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190974, intron 9 of 18)	intron (NM_001190974, intron 9 of 18)	-16464.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	1.5	0.5	0.5	1.5	0.5	0.5
Merged-chr10-77251859-3	chr10	77251377	77252377	+	666.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7346.0	NR_026944	100169878.0	Mm.420901	NR_026944	ENSMUSG00000078444	Gm10941	-	predicted gene 10941	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69993241-2	chr11	69992741	69993741	+	666.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019749, intron 3 of 3)	B4|SINE|B4	1871.0	NM_019749	56486.0	Mm.272460	NM_019749	ENSMUSG00000018567	Gabarap	-	gamma-aminobutyric acid receptor associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-48999480-2	chr7	48998980	48999980	+	666.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	40407.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94340395-2	chr11	94339880	94340880	+	666.166626	f0_balb.idr|f0_c57.idr	TTS (NM_146024)	TTS (NM_146024)	12379.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81412803-2	chr10	81412303	81413303	+	666.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 2 of 8)	intron (NM_026756, intron 2 of 8)	3228.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53078078-2	chr4	53077598	53078598	+	666.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_013454, exon 19 of 50)	exon (NM_013454, exon 19 of 50)	66218.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	4.0	3.0	0.5	2.0	0.0
Merged-chr16-59683623-2	chr16	59683123	59684123	+	666.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007938, intron 14 of 17)	intron (NM_007938, intron 14 of 17)	-44214.0	NM_001347244	56297.0	Mm.392505	NM_019665	ENSMUSG00000022722	Arl6	1110018H24Rik|2210411E14Rik|BBS3	ADP-ribosylation factor-like 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-118615645-3	chr5	118615160	118616160	+	666.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	54941.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.0	6.0	7.0	0.0	8.5	7.5
Merged-chr2-153424764-3	chr2	153424267	153425267	+	666.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001986, intron 2 of 7)	intron (NM_001001986, intron 2 of 7)	19712.0	NM_001001986	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89468773-2	chr15	89468273	89469273	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7479.0	NR_077233	100532730.0	Mm.461541	NR_077233		C230037L18Rik	-	RIKEN cDNA C230037L18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92716161-2	chr16	92715661	92716661	+	666.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-18832.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-48102363-2	chr4	48101863	48102863	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-22556.0	NM_026343	67727.0	Mm.171334	NM_026343	ENSMUSG00000061455	Stx17	4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351	syntaxin 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5850367-3	chr13	5849847	5850847	+	666.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7745.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120623818-2	chr11	120623318	120624318	+	666.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153056, intron 3 of 9)	intron (NM_153056, intron 3 of 9)	1058.0	NR_105901	102465565.0		NR_105901	ENSMUSG00000098282	Mir6936	Gm27574|mmu-mir-6936	microRNA 6936	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78520289-1	chr15	78519789	78520789	+	666.0	f1_c57bl6.idr	Intergenic	Intergenic	9362.0	NM_001204153	72709.0	Mm.34776	NM_028331	ENSMUSG00000022440	C1qtnf6	2810036M19Rik|CTRP6	C1q and tumor necrosis factor related protein 6	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr2-32774796-2	chr2	32774296	32775296	+	666.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001290564, exon 2 of 15)	5' UTR (NM_001290564, exon 2 of 15)	543.0	NM_001290564	338348.0	Mm.475130	NM_177384	ENSMUSG00000039021	Ttc16	1200002K10Rik	tetratricopeptide repeat domain 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17701511-1	chr12	17701011	17702011	+	666.0	f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	10702.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	10.0	6.5	12.0	5.0	4.5	8.0
Merged-chr1-175924102-3	chr1	175923612	175924612	+	666.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3783.0	NM_001290692	226720.0	Mm.11282	NM_001290692	ENSMUSG00000104158	Becn2	Beclin-2|Gm104	beclin 2	protein-coding	2.5	3.5	0.0	0.0	0.0	2.5
Merged-chr11-62731452-1	chr11	62730952	62731952	+	666.0	f0_c57.idr	Intergenic	Intergenic	-2359.0	NM_133208	170740.0	Mm.339982	NM_133208	ENSMUSG00000005267	Zfp287	B230333C16Rik|SKAT-2|Skat2|Znf287|mszf16|mszf74	zinc finger protein 287	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-113724804-2	chr9	113724277	113725277	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16518.0	NM_011052	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	2.5	2.5	3.5	0.0	0.0	0.0
Merged-chr17-28769664-3	chr17	28769158	28770158	+	666.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011950, intron 1 of 11)	intron (NM_011950, intron 1 of 11)	341.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70696981-2	chr11	70696481	70697481	+	666.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252485, intron 1 of 7)	intron (NM_001252485, intron 1 of 7)	3174.0	NM_001252482	103844.0	Mm.101581	NM_213729	ENSMUSG00000057054	Inca1	AI842396	inhibitor of CDK, cyclin A1 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107837412-2	chr13	107836912	107837912	+	666.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	52652.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	14.0	58.5	39.5	25.0	52.5	20.5
Merged-chr7-16015797-2	chr7	16015297	16016297	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-16302.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	11.5	16.5	16.5	15.5	19.5	17.5
Merged-chr12-21314271-1	chr12	21313771	21314771	+	666.0	f1_balb.idr	intron (NM_018813, intron 17 of 17)	PB1D11|SINE|Alu	-2121.0	NM_026347	67732.0	Mm.335830	NM_026347	ENSMUSG00000062054	Iah1	1500019E20Rik|4833421E05Rik	isoamyl acetate-hydrolyzing esterase 1 homolog	protein-coding	0.5	7.0	1.5	9.5	14.0	2.0
Merged-chr2-72261956-2	chr2	72261456	72262456	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23681.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-83528445-1	chr9	83527945	83528945	+	666.0	f0_balb.idr	Intergenic	Intergenic	-19893.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	2.0	0.0	0.5	0.0	0.0	0.0
Merged-chr1-170911352-2	chr1	170910852	170911852	+	666.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029984, intron 3 of 5)	PB1D9|SINE|Alu	1589.0	NM_001029984	435653.0	Mm.337931	NM_001029984	ENSMUSG00000070524	Fcrlb	FREB-2|FREB2|FcRL2|Fcrlm2|Fcry|mFCRL2	Fc receptor-like B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121547445-2	chr5	121546915	121547915	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1523.0	NM_010765	17165.0	Mm.272206	NM_010765	ENSMUSG00000029454	Mapkapk5	MK5|PRAK	MAP kinase-activated protein kinase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-99338430-2	chr13	99337930	99338930	+	666.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026873, intron 3 of 9)	intron (NM_026873, intron 3 of 9)	6248.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	88.5	129.0	105.0	71.0	115.0	100.0
Merged-chr7-67272326-2	chr7	67271826	67272826	+	666.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357325, intron 4 of 11)	RSINE1|SINE|B4	49710.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111551971-1	chr8	111551471	111552471	+	666.0	f0_balb.idr	intron (NM_001168623, intron 1 of 4)	intron (NM_001168623, intron 1 of 4)	13628.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr1-84356890-2	chr1	84356390	84357390	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa-int|LTR|ERVL-MaLR	-72245.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-10087292-1	chr11	10086792	10087792	+	666.0	f1_balb.idr	Intergenic	Intergenic	895350.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	0.0	1.5	0.0	6.5	4.5	0.0
Merged-chr14-46976229-1	chr14	46975729	46976729	+	666.0	f0_balb.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	-21301.0	NR_105813	102465206.0		NR_105813	ENSMUSG00000099036	Mir378c	Gm27930|mmu-mir-378c	microRNA 378c	ncRNA	14.5	29.0	22.0	4.0	31.0	23.5
Merged-chr2-129299328-1	chr2	129298828	129299828	+	666.0	f0_c57.idr	TTS (NM_010554)	TTS (NM_010554)	1958.0	NR_040371	100503468.0	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	-	predicted gene 14023	ncRNA	12.0	18.5	20.5	13.5	16.0	8.0
Merged-chr1-85254445-1	chr1	85253945	85254945	+	666.0	f1_balb.idr	intron (NM_175219, intron 5 of 7)	intron (NM_175219, intron 5 of 7)	16121.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-83921336-1	chr12	83920836	83921836	+	666.0	f0_balb.idr	intron (NR_073564, intron 1 of 12)	CpG	598.0	NR_073563	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6381092-2	chr4	6380592	6381592	+	666.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_016807, exon 4 of 9)	exon (NM_016807, exon 4 of 9)	15412.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-145672862-2	chr3	145672362	145673362	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22877.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69555433-2	chr11	69554933	69555933	+	666.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007911, exon 5 of 5)	3' UTR (NM_007911, exon 5 of 5)	4804.0	NM_007911	13643.0	Mm.249637	NM_007911	ENSMUSG00000003934	Efnb3	EFL-6|ELF-3|Elk-L3|Epl8|LERK-8|NLERK-2	ephrin B3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144679759-1	chr3	144679259	144680259	+	666.0	f0_balb.idr	Intergenic	Intergenic	40576.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121822703-1	chr5	121822203	121823203	+	666.0	f1_c57bl6.idr	intron (NM_001306126, intron 3 of 8)	intron (NM_001306126, intron 3 of 8)	-3430.0	NR_105998	102465624.0		NR_105998	ENSMUSG00000099063	Mir7031	Gm27859|mmu-mir-7031	microRNA 7031	ncRNA	4.0	1.5	1.5	0.0	7.0	5.5
Merged-chr19-44985144-1	chr19	44984644	44985644	+	666.0	f1_balb.idr	promoter-TSS (NR_040294)	promoter-TSS (NR_040294)	-594.0	NR_040294	73894.0	Mm.491408	NR_040294		4930414N06Rik	-	RIKEN cDNA 4930414N06 gene	ncRNA	1.5	0.0	0.0	0.0	0.0	3.0
Merged-chr7-142400611-2	chr7	142400111	142401111	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	-12741.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	19.0	25.5	15.5	0.5	2.0	1.0
Merged-chr5-35104313-2	chr5	35103813	35104813	+	666.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013587, intron 1 of 7)	intron (NM_013587, intron 1 of 7)	1384.0	NM_013587	16976.0	Mm.277661	NM_013587	ENSMUSG00000029103	Lrpap1	AA617339|AI790446|AU042172|C77774|HBP44|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50767686-1	chr9	50767186	50768186	+	666.0	f1_c57bl6.idr	promoter-TSS (NM_198675)	promoter-TSS (NM_198675)	498.0	NM_001361108	68721.0	Mm.171374	NM_023483	ENSMUSG00000037971	1110032A03Rik	4930500N06Rik|c11orf1	RIKEN cDNA 1110032A03 gene	protein-coding	31.0	82.5	37.0	52.5	65.0	43.0
Merged-chr19-46326692-2	chr19	46326192	46327192	+	666.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001347454, exon 1 of 18)	5' UTR (NM_001347454, exon 1 of 18)	174.0	NM_001347454	73728.0	Mm.268532	NM_028627	ENSMUSG00000037126	Psd	1110007H17Rik|A930015K15|Efa6|Efa6a|Psdl|mKIAA2011	pleckstrin and Sec7 domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81942095-1	chr13	81941595	81942595	+	666.0	f1_c57bl6.idr	Intergenic	Intergenic	158848.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	9.0	1.0	0.0	5.0	4.0	0.0
Merged-chr7-80755673-1	chr7	80755173	80756173	+	666.0	f0_balb.idr	intron (NM_016721, intron 11 of 37)	intron (NM_016721, intron 11 of 37)	47658.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.0	11.0	3.5	20.0	20.5	12.5
Merged-chr13-98831026-1	chr13	98830526	98831526	+	666.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-15577.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0.0	2.5	2.5	0.0	0.0	6.0
Merged-chr6-119399496-2	chr6	119398996	119399996	+	666.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_197985, intron 1 of 7)	Lx5c|LINE|L1	-10762.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46498057-2	chr19	46497557	46498557	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3591.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr9-122293375-2	chr9	122292875	122293875	+	666.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271873, intron 1 of 12)	B4A|SINE|B4	1048.0	NM_001271873	102566.0	Mm.87676	NM_133979	ENSMUSG00000037949	Ano10	AI604832|Tmem16k	anoctamin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43824382-2	chr1	43823882	43824882	+	666.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026430, intron 1 of 14)	Lx8|LINE|L1	3326.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139369830-1	chr4	139369330	139370330	+	666.0	f1_balb.idr	intron (NM_146157, intron 18 of 23)	intron (NM_146157, intron 18 of 23)	-10829.0	NM_001160319	69116.0	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134495240-2	chr4	134494666	134495666	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1595.0	NM_001285845	71904.0	Mm.142343	NM_027995	ENSMUSG00000037348	Paqr7	2310021M12Rik|AV001994|BB007237|Mpra|PGLP|mPR	progestin and adipoQ receptor family member VII	protein-coding	3.0	1.5	0.5	0.5	3.0	0.0
Merged-chr2-80026851-1	chr2	80026351	80027351	+	666.0	f1_balb.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	12051.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156003735-1	chr1	156003235	156004235	+	666.0	f1_c57bl6.idr	TTS (NM_001160019)	TTS (NM_001160019)	-30480.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	2.0	11.0	16.0	2.0	7.0	9.5
Merged-chr17-87375330-2	chr17	87374830	87375830	+	666.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 19 of 19)	intron (NM_028639, intron 19 of 19)	52411.0	NM_029298	75467.0	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	0.0	0.0	0.0	2.0	0.0	0.0
Merged-chr16-30068612-2	chr16	30068112	30069112	+	666.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008235)	TTS (NM_008235)	3255.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37457782-1	chr1	37457282	37458282	+	666.0	f0_balb.idr	intron (NM_173870, intron 8 of 15)	intron (NM_173870, intron 8 of 15)	27643.0	NM_001356528	67387.0	Mm.27404	NM_026123	ENSMUSG00000026111	Unc50	1110002A21Rik|GMH1|UNCL|URP	unc-50 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-109909340-2	chr9	109908840	109909840	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	19697.0	NR_106057	102465660.0		NR_106057	ENSMUSG00000098490	Mir7089	Gm27418|mmu-mir-7089	microRNA 7089	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105683347-1	chr5	105682847	105683847	+	666.0	f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-16622.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	2.0	2.5	6.5	7.0	45.5	10.5
Merged-chr18-38189459-2	chr18	38188959	38189959	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	20303.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64338926-2	chr7	64338426	64339426	+	666.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172742, exon 16 of 16)	3' UTR (NM_172742, exon 16 of 16)	35169.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107113400-1	chr3	107112900	107113900	+	666.0	f0_balb.idr	3' UTR (NM_008417, exon 3 of 3)	3' UTR (NM_008417, exon 3 of 3)	11833.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0.0	1.0	3.0	2.0	18.0	7.0
Merged-chr10-127104167-2	chr10	127103667	127104667	+	666.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177614, intron 5 of 13)	intron (NM_177614, intron 5 of 13)	16993.0	NM_177614	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91876513-2	chr16	91876013	91877013	+	666.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	55117.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-29967716-2	chr14	29967216	29968216	+	666.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019979)	promoter-TSS (NM_019979)	-664.0	NM_019979	80795.0	Mm.104491	NM_019979	ENSMUSG00000042682	Selenok	1110001C03Rik|AA673253|HSPC030|Hsp30|Selk	selenoprotein K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-146484030-2	chr4	146483530	146484530	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17970.0	NM_001243138	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90142314-3	chr7	90141846	90142846	+	666.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	12133.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	21.0	74.5	31.0	30.0	75.5	32.0
Merged-chr9-123867772-2	chr9	123867272	123868272	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5743.0	NM_011798	23832.0	Mm.390241	NM_011798	ENSMUSG00000060509	Xcr1	Ccxcr1|Gpr5|mXcr1	chemokine (C motif) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-58383068-2	chr14	58382568	58383568	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	310382.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17747464-2	chr12	17746964	17747964	+	666.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	56655.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	4.5	10.5	2.0	0.5	10.0	3.5
Merged-chr17-86302568-1	chr17	86302068	86303068	+	666.0	f1_balb.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	-15390.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	5.0	0.0	1.5	0.0	0.0	0.0
Merged-chr11-115635781-2	chr11	115635281	115636281	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-7486.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-45951920-2	chr11	45951420	45952420	+	666.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080969, intron 3 of 5)	intron (NM_001080969, intron 3 of 5)	3268.0	NM_001290737	66628.0	Mm.269083	NM_001080969	ENSMUSG00000011254	Thg1l	-	tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)	protein-coding	0.0	2.0	0.0	0.0	0.5	0.0
Merged-chr15-28726117-2	chr15	28725617	28726617	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	522351.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116167026-2	chr3	116166526	116167526	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-37338.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	3.0	14.0	10.5	7.0	19.0	6.5
Merged-chr18-75286747-2	chr18	75286232	75287232	+	666.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027727, exon 17 of 17)	exon (NM_027727, exon 17 of 17)	10585.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	3.0	1.5	4.0	0.0	2.0	2.5
Merged-chr19-6404666-2	chr19	6404166	6405166	+	666.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011242, exon 7 of 17)	exon (NM_011242, exon 7 of 17)	4083.0	NM_011242	19395.0	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34606048-2	chr6	34605548	34606548	+	666.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 1 of 13)	intron (NM_001347100, intron 1 of 13)	7544.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr11-61652683-2	chr11	61652183	61653183	+	666.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027817)	promoter-TSS (NM_027817)	-638.0	NM_027817	71520.0	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154899884-3	chr4	154899378	154900378	+	665.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025582)	promoter-TSS (NM_025582)	-835.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-21917790-3	chr3	21917282	21918282	+	665.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-158870.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-68203572-4	chr8	68203064	68204064	+	665.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72964.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	19.0	8.5	12.5	17.5	17.5	4.0
Merged-chr2-129591496-2	chr2	129591024	129592024	+	665.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1315.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	187.0	428.0	287.5	218.5	483.5	310.0
Merged-chr7-67225411-2	chr7	67224911	67225911	+	665.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357962)	TTS (NM_001357962)	2795.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66600871-2	chr9	66600371	66601371	+	665.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7756.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28452154-3	chr7	28451617	28452617	+	665.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001141921)	promoter-TSS (NM_001141921)	-110.0	NR_030567	100124445.0		NR_030567	ENSMUSG00000077998	Mir466f-2	Mirn466f-2	microRNA 466f-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60677514-2	chr13	60677014	60678014	+	665.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	75303.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	1.0	2.0	0.5	10.5	6.0	3.0
Merged-chr12-115614554-3	chr12	115614006	115615006	+	665.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	81288.0	NR_105810	102465205.0		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-88131973-3	chr11	88131402	88132402	+	665.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198013, intron 1 of 10)	intron (NM_198013, intron 1 of 10)	32756.0	NM_198013	103841.0	Mm.374846	NM_198013	ENSMUSG00000018378	Cuedc1	AI841487|C330016O16Rik	CUE domain containing 1	protein-coding	0.0	0.0	5.0	8.5	9.0	3.0
Merged-chr8-105546663-3	chr8	105546152	105547152	+	665.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013477, intron 1 of 7)	intron (NM_013477, intron 1 of 7)	19412.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-118538916-3	chr13	118538423	118539423	+	665.766663	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17245.0	NR_045982	75890.0	Mm.141235	NR_045982	ENSMUSG00000100727	1700003P14Rik	1700030O10Rik|4930584L06Rik	RIKEN cDNA 1700003P14 gene	ncRNA	0.0	11.0	2.5	11.5	3.0	0.0
Merged-chr18-20749134-2	chr18	20748634	20749634	+	665.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2730.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180894793-2	chr2	180894249	180895249	+	665.75	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029538)	TTS (NR_029538)	709.0	NR_029538	723951.0		NR_029538	ENSMUSG00000065454	Mir124a-3	Mirn124a-3|mir-124-3|mir-124a-3	microRNA 124a-3	ncRNA	0.5	0.0	0.5	0.0	0.0	1.0
Merged-chr2-29746554-2	chr2	29746094	29747094	+	665.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14934.0	NM_001177392	433416.0	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	-	predicted gene 13547	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-57423504-2	chr14	57423004	57424004	+	665.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009376)	promoter-TSS (NM_009376)	-567.0	NM_009376	21821.0	Mm.4653	NM_009376	ENSMUSG00000040040	Ift88	AW552028|Tg737|Tg737Rpw|TgN737Rpw|Ttc10|flexo|fxo|orpk|polaris	intraflagellar transport 88	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81132106-2	chr10	81131606	81132606	+	665.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-4165.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110854161-2	chr12	110853661	110854661	+	665.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_028365, intron 1 of 7)	intron (NM_028365, intron 1 of 7)	3882.0	NM_028365	72805.0	Mm.443524	NM_028365	ENSMUSG00000021271	Zfp839	2810455K09Rik	zinc finger protein 839	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12322988-4	chr15	12322491	12323491	+	665.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025673, intron 1 of 3)	intron (NM_025673, intron 1 of 3)	1495.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27735371-3	chr3	27734876	27735876	+	665.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24924.0	NM_173182	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-39610460-3	chr8	39609972	39610972	+	665.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113326, intron 7 of 9)	L1MC2|LINE|L1	32206.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	14.0	12.5	6.5	7.0	25.0	12.0
Merged-chr13-37509545-1	chr13	37509045	37510045	+	665.666687	f0_balb.idr	Intergenic	Intergenic	164200.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.0	4.0	0.5	0.0	0.0	0.0
Merged-chr15-79261567-3	chr15	79261037	79262037	+	665.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177580, exon 9 of 14)	exon (NM_177580, exon 9 of 14)	-6789.0	NM_020516	57274.0	Mm.441697	NM_020516	ENSMUSG00000032988	Slc16a8	Mct3	solute carrier family 16 (monocarboxylic acid transporters), member 8	protein-coding	0.0	0.0	0.0	6.0	0.0	0.0
Merged-chr6-128840169-2	chr6	128839669	128840669	+	665.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13854.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-68822793-2	chr7	68822293	68823293	+	665.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73555.0	NM_025549	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111060561-2	chr9	111060061	111061061	+	665.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2C_Mm|LTR|ERVL	-3043.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	4.0	18.0	5.5	7.5	25.5	15.5
Merged-chr9-95548870-2	chr9	95548370	95549370	+	665.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-10947.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140752700-3	chr5	140752140	140753140	+	665.6270139999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173405, exon 8 of 8)	3' UTR (NM_173405, exon 8 of 8)	28513.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3742153-2	chr4	3741593	3742593	+	665.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 2 of 12)	intron (NM_001111096, intron 2 of 12)	27129.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	34.0	27.5	19.5	14.5	31.5	40.0
Merged-chr4-108870176-3	chr4	108869688	108870688	+	665.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8882.0	NM_023537	69908.0	Mm.41580	NM_023537	ENSMUSG00000003411	Rab3b	2610528C18Rik	RAB3B, member RAS oncogene family	protein-coding	1.0	6.5	1.0	4.5	0.0	1.5
Merged-chr1-150404011-3	chr1	150403510	150404510	+	665.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133780, exon 7 of 52)	exon (NM_133780, exon 7 of 52)	-10930.0	NM_001357579	226499.0	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54683390-2	chr12	54682890	54683890	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025456, intron 4 of 5)	intron (NM_025456, intron 4 of 5)	12504.0	NM_001331162	66266.0	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding	0.0	5.0	4.0	3.0	5.0	1.5
Merged-chr17-17902955-2	chr17	17902455	17903455	+	665.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15131.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80063684-1	chr10	80063184	80064184	+	665.5	f0_balb.idr	exon (NM_183426, exon 17 of 32)	exon (NM_183426, exon 17 of 32)	9665.0	NM_001037741	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141575647-2	chr4	141575134	141576134	+	665.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133754)	TTS (NM_133754)	24290.0	NM_001163256	74202.0	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	1.5	12.5	9.5	19.5	0.0	7.0
Merged-chr14-31167607-2	chr14	31167107	31168107	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138672, intron 1 of 68)	intron (NM_138672, intron 1 of 68)	1034.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89845260-2	chr3	89844760	89845760	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172530, intron 2 of 5)	intron (NM_172530, intron 2 of 5)	13890.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62196964-2	chr9	62196464	62197464	+	665.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47136.0	NR_040769	330958.0	Mm.411888	NR_040769	ENSMUSG00000111232	A730043L09Rik	A730043L09	RIKEN cDNA A730043L09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35055590-2	chr7	35055090	35056090	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009884, intron 1 of 1)	intron (NM_009884, intron 1 of 1)	976.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	76.0	108.5	95.5	76.0	108.5	101.0
Merged-chr9-122442144-2	chr9	122441644	122442644	+	665.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43343.0	NR_045967	654800.0	Mm.393956	NR_045967		A730085K08Rik	-	RIKEN cDNA A730085K08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr4-107932743-2	chr4	107932243	107933243	+	665.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9154.0	NM_009949	12896.0	Mm.307620	NM_009949	ENSMUSG00000028607	Cpt2	AI323697|CPTII	carnitine palmitoyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64364611-2	chr5	64364111	64365111	+	665.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103331.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70833948-2	chr14	70833450	70834450	+	665.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-18983.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	15.0	41.0	24.0	0.0	0.5	1.0
Merged-chr15-27624844-2	chr15	27624344	27625344	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013792, intron 1 of 6)	intron (NM_001013792, intron 1 of 6)	5849.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80752829-2	chr7	80752321	80753321	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 11 of 37)	intron (NM_016721, intron 11 of 37)	50510.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.5	2.0	1.5	3.0	2.0	1.5
Merged-chr15-27628700-2	chr15	27628200	27629200	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013792, intron 1 of 6)	intron (NM_001013792, intron 1 of 6)	1993.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98468607-2	chr15	98468107	98469107	+	665.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	12295.0	NM_146280	258277.0	Mm.222977	NM_146280	ENSMUSG00000032987	Olfr281	MOR160-5	olfactory receptor 281	protein-coding	0.0	0.0	2.5	0.0	0.0	5.5
Merged-chr18-44607721-2	chr18	44607216	44608216	+	665.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001085373, intron 3 of 18)	intron (NM_001085373, intron 3 of 18)	-53949.0	NR_026853	626275.0	Mm.427116	NR_026853	ENSMUSG00000097610	A930012L18Rik	-	RIKEN cDNA A930012L18 gene	ncRNA	2.5	5.5	0.5	2.5	5.5	0.0
Merged-chr13-110383347-2	chr13	110382847	110383847	+	665.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-11697.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	3.0	0.0	0.0	3.0	0.0	0.0
Merged-chr4-122870283-2	chr4	122869819	122870819	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007598, intron 3 of 12)	intron (NM_007598, intron 3 of 12)	15757.0	NM_001358035	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	13.5	13.0	14.5	4.0	15.0	7.0
Merged-chr10-127229654-2	chr10	127229154	127230154	+	665.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008447, exon 28 of 28)	3' UTR (NM_008447, exon 28 of 28)	-18032.0	NM_001359280	117150.0	Mm.22682	NM_054097	ENSMUSG00000025417	Pip4k2c	Pip5k2c	phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3382474-2	chr19	3381974	3382974	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 18 of 18)	PB1D11|SINE|Alu	-6383.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65959102-2	chr3	65958602	65959602	+	665.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355432)	promoter-TSS (NM_001355432)	-853.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27736632-2	chr2	27736132	27737132	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	26049.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36522855-2	chr18	36522355	36523355	+	665.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-5297.0	NM_172830	240215.0	Mm.135463	NM_172830	ENSMUSG00000024485	Slc4a9	AE4|D630003B07|D630024F24Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 9	protein-coding	0.0	0.0	1.0	0.0	5.5	4.0
Merged-chr2-18836623-2	chr2	18836123	18837123	+	665.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34805.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53303932-2	chr15	53303432	53304432	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	42251.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93073506-2	chr1	93073006	93074006	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001294150, intron 7 of 46)	intron (NM_001294150, intron 7 of 46)	8974.0	NM_001294150	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-69399582-2	chr18	69399082	69400082	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	53422.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	10.0	23.0	31.0	14.0	36.0	17.5
Merged-chr9-56113471-2	chr9	56112971	56113971	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	23495.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59642855-3	chr2	59642355	59643355	+	665.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198294, intron 1 of 26)	intron (NM_198294, intron 1 of 26)	-3914.0	NM_001290659	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-82163239-2	chr12	82162739	82163739	+	665.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33A_|LTR|ERVL	-6777.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34762441-2	chr18	34761941	34762941	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357457, intron 1 of 3)	MER117|DNA|hAT-Charlie	3114.0	NM_001357457	66306.0	Mm.29424	NM_175104	ENSMUSG00000034300	Fam53c	2810012G03Rik|Gm21179	family with sequence similarity 53, member C	protein-coding	0.0	0.0	1.0	2.5	0.0	0.0
Merged-chr10-80691014-2	chr10	80690514	80691514	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 2 of 3)	intron (NM_172457, intron 2 of 3)	10806.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138993349-2	chr5	138992849	138993849	+	665.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008808, exon 2 of 6)	exon (NM_008808, exon 2 of 6)	1604.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78463644-2	chr10	78463144	78464144	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172134, intron 1 of 10)	intron (NM_172134, intron 1 of 10)	1304.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32261581-2	chr2	32261081	32262081	+	665.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1476.0	NM_011675	22245.0	Mm.425076	NM_011675	ENSMUSG00000002550	Uck1	URK1|Umpk	uridine-cytidine kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36904923-1	chr17	36904423	36905423	+	665.5	f0_balb.idr	intron (NM_146077, intron 3 of 7)	intron (NM_146077, intron 3 of 7)	6793.0	NM_146077	224762.0	Mm.213417	NM_146077	ENSMUSG00000058063	Trim31	BC026666|HCG1|HCGI|RNF	tripartite motif-containing 31	protein-coding	0.0	1.0	1.0	0.0	1.0	0.0
Merged-chr12-3356250-2	chr12	3355750	3356750	+	665.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-8882.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-194981091-2	chr1	194980591	194981591	+	665.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4132.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55364889-2	chr19	55364389	55365389	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 3 of 8)	intron (NM_001360431, intron 3 of 8)	48832.0	NM_001293686	53611.0	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46892169-2	chr17	46891669	46892669	+	665.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178385, exon 1 of 1)	3' UTR (NM_178385, exon 1 of 1)	1548.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64373390-2	chr15	64372890	64373890	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 1 of 28)	intron (NM_001276461, intron 1 of 28)	9529.0	NM_001276461	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-78918868-2	chr7	78918368	78919368	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113527, intron 2 of 2)	intron (NM_001113527, intron 2 of 2)	4633.0	NM_001113527	57444.0	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153488744-2	chr1	153488244	153489244	+	665.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1084.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73692521-3	chr12	73692027	73693027	+	665.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 3 of 13)	intron (NM_008856, intron 3 of 13)	107731.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84190844-2	chr12	84190344	84191344	+	665.416687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	3171.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67907253-4	chr15	67906724	67907724	+	665.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	351632.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	4.0	5.0	20.0	12.5	11.5	2.5
Merged-chr4-34561170-2	chr4	34560670	34561670	+	665.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001007589, intron 1 of 4)	B3|SINE|B2	10555.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105056936-2	chr3	105056436	105057436	+	665.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-3790.0	NM_030249	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90244077-2	chr9	90243577	90244577	+	665.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 2 of 12)	intron (NM_194334, intron 2 of 12)	26692.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	2.0	4.0	6.5	11.0	19.5	6.5
Merged-chr9-108054562-2	chr9	108054110	108055110	+	665.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_177275, exon 1 of 1)	exon (NM_177275, exon 1 of 1)	1451.0	NM_177275	320844.0	Mm.449806	NM_177275	ENSMUSG00000032593	Amigo3	E430002N15Rik|ali3|mKIAA1851	adhesion molecule with Ig like domain 3	protein-coding	0.0	0.0	3.0	0.0	2.0	0.0
Merged-chr8-83091543-3	chr8	83091047	83092047	+	665.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177378)	TTS (NM_177378)	-73805.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	2.0	23.5	10.5	2.5	6.5	7.0
Merged-chr7-78924448-3	chr7	78923987	78924987	+	665.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10252.0	NM_001113527	57444.0	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165924828-2	chr2	165924328	165925328	+	665.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-39990.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	2.0	30.0	11.0	5.5	32.5	23.0
Merged-chr10-21037375-3	chr10	21036886	21037886	+	665.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358561, intron 17 of 22)	Lx8b|LINE|L1	-3434.0	NM_001177776	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	0.0	0.0	1.0	4.0	4.0	4.0
Merged-chr8-119112911-3	chr8	119112389	119113389	+	665.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019707, intron 7 of 13)	intron (NM_019707, intron 7 of 13)	-231649.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30551167-2	chr14	30550667	30551667	+	665.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_009388, intron 1 of 13)	intron (NM_009388, intron 1 of 13)	2036.0	NM_009388	21881.0	Mm.290692	NM_009388	ENSMUSG00000021957	Tkt	p68	transketolase	protein-coding	0.0	6.0	6.5	0.5	1.0	4.0
Merged-chr1-172474549-3	chr1	172474033	172475033	+	665.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029612)	promoter-TSS (NM_029612)	-827.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	2.5	17.0	16.0	17.0	20.0	9.0
Merged-chr17-17870411-1	chr17	17869911	17870911	+	665.333313	f1_c57bl6.idr	Intergenic	ZP3AR|Satellite|Satellite	13528.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	57.5	121.5	67.0	39.0	113.5	37.5
Merged-chr3-104758650-4	chr3	104758157	104759157	+	665.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	18890.0	NM_183224	329731.0	Mm.389494	NM_183224	ENSMUSG00000055865	Fam19a3	7530404M11Rik|Sam3|TAFA3|Tafa-3	family with sequence similarity 19, member A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155654490-2	chr4	155654021	155655021	+	665.25	f0_balb.idr|f1_balb.idr	TTS (NM_001256107)	TTS (NM_001256107)	-1137.0	NM_011985	26561.0	Mm.29373	NM_011985	ENSMUSG00000029061	Mmp23	CA-MMP	matrix metallopeptidase 23	protein-coding	0.0	0.0	0.0	0.0	1.5	1.5
Merged-chr3-21934330-2	chr3	21933830	21934830	+	665.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-142322.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26628456-2	chr2	26627956	26628956	+	665.224976	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019833)	promoter-TSS (NM_019833)	-1.0	NM_019833	56279.0	Mm.279863	NM_019833	ENSMUSG00000036186	Fam69b	AB030186|AW209000|B230317C12Rik|PIP49	family with sequence similarity 69, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-138982441-3	chr3	138981916	138982916	+	665.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 4 of 13)	B4A|SINE|B4	92785.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	11.5	9.5	15.5	5.0	13.0	7.5
Merged-chr6-148705895-3	chr6	148705406	148706406	+	665.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-27906.0	NR_131024	75831.0	Mm.159595	NR_131024	ENSMUSG00000084909	4930528G23Rik	-	RIKEN cDNA 4930528G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-30799679-4	chr11	30799176	30800176	+	665.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134013, intron 3 of 46)	B3A|SINE|B2	27901.0	NM_134013	103554.0	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	10.5	5.0	1.0	1.5	0.0	2.0
Merged-chr10-95519384-2	chr10	95518884	95519884	+	665.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_080560, intron 1 of 3)	intron (NM_080560, intron 1 of 3)	4222.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-83934460-4	chr18	83933947	83934947	+	665.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	152115.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-51648179-2	chr1	51647683	51648683	+	665.166626	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51465.0	NR_151621	100045066.0	Mm.404734	NR_151621		Gm17767	-	predicted gene, 17767	ncRNA	0.0	4.0	0.0	3.5	0.0	0.0
Merged-chr3-89688911-2	chr3	89688411	89689411	+	665.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26111.0	NM_001038587	56417.0	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|DRADA|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	0.0	0.0	3.0	4.0	4.0	2.5
Merged-chr11-73008666-2	chr11	73008166	73009166	+	665.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008771, intron 3 of 11)	intron (NM_008771, intron 3 of 11)	9521.0	NM_008771	18436.0	Mm.25722	NM_008771	ENSMUSG00000020787	P2rx1	AI323649|BB122383|P2x|Pdcd3|RP-2	purinergic receptor P2X, ligand-gated ion channel, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-52004262-2	chr1	52003762	52004762	+	665.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308266, intron 2 of 24)	intron (NM_001308266, intron 2 of 24)	-3978.0	NM_011487	20849.0	Mm.1550	NM_011487	ENSMUSG00000062939	Stat4	-	signal transducer and activator of transcription 4	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr15-66578535-3	chr15	66578067	66579067	+	665.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081409, intron 1 of 20)	intron (NM_001081409, intron 1 of 20)	995.0	NM_001081409	239510.0	Mm.267473	NM_178718	ENSMUSG00000072501	Phf20l1	CGI-72|E130113K22Rik	PHD finger protein 20-like 1	protein-coding	6.0	0.0	0.0	1.5	1.0	0.5
Merged-chr5-113615849-2	chr5	113615349	113616349	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 2 of 2)	ORR1D1|LTR|ERVL-MaLR	27754.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21047627-2	chr11	21047127	21048127	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43697.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-27746467-2	chr10	27745967	27746967	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-129525.0	NM_008481	16773.0	Mm.256087	NM_008481	ENSMUSG00000019899	Lama2	5830440B04|dy|mKIAA4087|mer|merosin	laminin, alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129513969-2	chr2	129513473	129514473	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177653, intron 1 of 6)	intron (NM_177653, intron 1 of 6)	22629.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	23.5	100.0	67.0	23.0	80.0	26.0
Merged-chr2-153173528-2	chr2	153173028	153174028	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	B2_Mm1a|SINE|B2	12227.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136215923-2	chr5	136215423	136216423	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16969.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123345908-1	chr4	123345408	123346408	+	665.0	f1_balb.idr	Intergenic	B1_Mus1|SINE|Alu	-2656.0	NM_007558	12163.0	Mm.439749	NM_007558	ENSMUSG00000032726	Bmp8a	Bmp7r1|OP-2|OP2	bone morphogenetic protein 8a	protein-coding	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr3-34033260-2	chr3	34032760	34033760	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113189, intron 1 of 16)	RSINE1|SINE|B4	13181.0	NM_001113189	14359.0	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36930627-3	chr15	36930135	36931135	+	665.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76767.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123904336-1	chr5	123903836	123904836	+	665.0	f1_c57bl6.idr	Intergenic	Intergenic	-2939.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	0.0	8.5	2.5	15.5	8.0	4.0
Merged-chr11-116844438-2	chr11	116843938	116844938	+	665.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033398)	promoter-TSS (NM_033398)	923.0	NM_028865	74319.0	Mm.429312	NM_028865	ENSMUSG00000090266	Mettl23	1110005A03Rik|1500035B17Rik|4933424L15Rik	methyltransferase like 23	protein-coding	3.0	18.0	17.0	8.0	7.5	35.5
Merged-chr11-85182793-2	chr11	85182293	85183293	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	11697.0	NM_028589	73634.0	Mm.48850	NM_028589	ENSMUSG00000018479	1700125H20Rik	-	RIKEN cDNA 1700125H20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42517227-2	chr19	42516727	42517727	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1578.0	NM_177464	52013.0	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	0.0	0.0	0.0	0.0	0.0	4.0
Merged-chr16-33571278-2	chr16	33570778	33571778	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 4 of 11)	ORR1A2-int|LTR|ERVL-MaLR	52683.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3584599-2	chr19	3584099	3585099	+	665.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008513)	TTS (NM_008513)	-8850.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62495796-2	chr10	62495296	62496296	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 3 of 3)	intron (NM_001358965, intron 3 of 3)	-8991.0	NM_001358543	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139253640-1	chr4	139253140	139254140	+	665.0	f1_c57bl6.idr	intron (NM_001037761, intron 2 of 9)	intron (NM_001037761, intron 2 of 9)	57068.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	13.0	37.5	23.5	18.5	12.0	15.5
Merged-chr3-97629445-2	chr3	97628945	97629945	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010232, intron 2 of 8)	(A)n|Simple_repeat|Simple_repeat	426.0	NM_001355119	14263.0	Mm.385180	NM_010232	ENSMUSG00000028088	Fmo5	5033418D19Rik|AI195026	flavin containing monooxygenase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32706443-2	chr2	32705943	32706943	+	665.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_130860, exon 7 of 7)	3' UTR (NM_130860, exon 7 of 7)	6341.0	NM_130860	107951.0	Mm.27557	NM_130860	ENSMUSG00000009555	Cdk9	PITALRE	cyclin-dependent kinase 9 (CDC2-related kinase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117473656-1	chr4	117473156	117474156	+	665.0	f0_balb.idr	intron (NM_025739, intron 2 of 14)	intron (NM_025739, intron 2 of 14)	23396.0	NM_025739	66743.0	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	0.0	0.0	0.0	1.0	0.0	0.5
Merged-chr16-45733359-1	chr16	45732859	45733859	+	665.0	f0_balb.idr	intron (NR_073572, intron 3 of 4)	MTD|LTR|ERVL-MaLR	-8828.0	NM_019754	56370.0	Mm.24183	NM_019754	ENSMUSG00000022658	Tagln3	2700038H05Rik|2900005O10Rik|AI426007|Np25	transgelin 3	protein-coding	3.5	8.0	5.0	2.5	7.0	13.0
Merged-chr13-52641892-2	chr13	52641392	52642392	+	665.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001198977, exon 12 of 14)	exon (NM_001198977, exon 12 of 14)	45010.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-141132587-1	chr6	141132087	141133087	+	665.0	f0_balb.idr	Intergenic	L1MD|LINE|L1	-116682.0	NM_018779	54611.0	Mm.103728	NM_018779	ENSMUSG00000041741	Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-87440728-2	chr12	87440228	87441228	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001102565, intron 1 of 5)	B3|SINE|B2	-2971.0	NR_037228	100526546.0		NR_037228	ENSMUSG00000105428	Mir3068	mir-3068|mmu-mir-3068	microRNA 3068	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123965009-2	chr9	123964509	123965509	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009912, intron 1 of 1)	intron (NM_009912, intron 1 of 1)	3683.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-68072707-2	chr15	68072207	68073207	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	186149.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152129771-2	chr4	152129271	152130271	+	665.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019585)	promoter-TSS (NM_019585)	-846.0	NM_019585	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103919672-2	chr2	103919172	103920172	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18721.0	NR_131913	100996933.0	Mm.394449	NR_131913		Lincred1	-	long intergenic non-protein coding RNA of erythroid differentiation 1	ncRNA	3.0	2.0	0.5	0.5	1.5	0.0
Merged-chr2-52897763-2	chr2	52897263	52898263	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	39895.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142457504-2	chr5	142457004	142458004	+	665.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_199068, exon 9 of 9)	3' UTR (NM_199068, exon 9 of 9)	-6427.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-26476575-2	chr6	26476075	26477075	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	545149.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67456874-2	chr18	67456374	67457374	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-7738.0	NM_027130	69597.0	Mm.426052	NM_027130	ENSMUSG00000024527	Afg3l2	2310036I02Rik|AW260507|Emv66|par	AFG3-like AAA ATPase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24448950-1	chr7	24448450	24449450	+	665.0	f0_balb.idr	Intergenic	Intergenic	-3268.0	NM_199013	210145.0	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	0.0	8.5	0.0	7.0	7.0	4.0
Merged-chr2-132251554-2	chr2	132251054	132252054	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011045, intron 3 of 5)	intron (NM_011045, intron 3 of 5)	1626.0	NM_011045	18538.0	Mm.7141	NM_011045	ENSMUSG00000027342	Pcna	-	proliferating cell nuclear antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119477262-2	chr11	119476762	119477762	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153849, intron 2 of 3)	intron (NR_153849, intron 2 of 3)	13973.0	NR_153849	78439.0	Mm.440446	NR_153849	ENSMUSG00000109408	A930037H05Rik	Gm44935	RIKEN cDNA A930037H05 gene	ncRNA	1.0	3.5	2.0	2.5	5.0	0.0
Merged-chr6-24712655-1	chr6	24712155	24713155	+	665.0	f0_balb.idr	Intergenic	Intergenic	-20590.0	NM_028920	74409.0	Mm.87331	NM_028920	ENSMUSG00000029679	Hyal6	4932701A20Rik|Hyal-ps1|Hyalp1	hyaluronoglucosaminidase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5492120-2	chr19	5491620	5492620	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007687, intron 1 of 3)	B1_Mur4|SINE|Alu	1665.0	NM_007687	12631.0	Mm.329655	NM_007687	ENSMUSG00000056201	Cfl1	AA959946|Cof	cofilin 1, non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50331607-1	chr17	50331107	50332107	+	665.0	f1_c57bl6.idr	Intergenic	Intergenic	-37987.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	4.0	7.0	7.0	6.5	1.5	6.0
Merged-chr15-41778868-1	chr15	41778368	41779368	+	665.0	f0_balb.idr	intron (NR_152565, intron 3 of 17)	intron (NR_152565, intron 3 of 17)	-10127.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80392716-2	chr10	80392216	80393216	+	665.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001306143, exon 7 of 7)	3' UTR (NM_001306143, exon 7 of 7)	-5065.0	NM_198615	237400.0	Mm.268389	NM_198615	ENSMUSG00000048696	Mex3d	BC059858|Rkhd1	mex3 RNA binding family member D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38083632-2	chr2	38083132	38084132	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146122, intron 5 of 21)	intron (NM_146122, intron 5 of 21)	203752.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-24384825-2	chr15	24384325	24385325	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	1028939.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58482527-1	chr13	58482027	58483027	+	665.0	f1_balb.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-79184.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0.5	0.0	2.5	0.0	0.0	0.0
Merged-chr2-25627468-2	chr2	25626968	25627968	+	665.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007995, exon 2 of 10)	exon (NM_007995, exon 2 of 10)	506.0	NM_007995	14133.0	Mm.10510	NM_007995	ENSMUSG00000026938	Fcna	Fcn1	ficolin A	protein-coding	12.5	24.5	20.5	12.0	22.5	19.0
Merged-chr16-8832936-2	chr16	8832436	8833436	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081400, intron 2 of 3)	B2_Mm2|SINE|B2	2836.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32191347-2	chr17	32190847	32191847	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-1877.0	NM_001347341	71932.0	Mm.176240	NM_001033163	ENSMUSG00000037577	Ephx3	2310063B19Rik|Abhd9|EH3	epoxide hydrolase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60962423-1	chr2	60961923	60962923	+	665.0	f0_c57.idr	intron (NM_020296, intron 1 of 13)	CpG	781.0	NM_020296	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-68693112-2	chr3	68692612	68693612	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008351, intron 2 of 6)	B3|SINE|B2	1688.0	NM_008351	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36470382-2	chr18	36469883	36470883	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAG)n|Simple_repeat|Simple_repeat	-15888.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	9.0	16.0	10.5	2.0	9.0	6.5
Merged-chr17-34999236-2	chr17	34998736	34999736	+	665.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_033075, exon 2 of 2)	exon (NM_033075, exon 2 of 2)	1510.0	NM_033075	110956.0	Mm.22506	NM_033075		D17H6S56E-5	G7e	DNA segment, Chr 17, human D6S56E 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83742655-2	chr11	83742155	83743155	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-4285.0	NM_183249	66107.0	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-67619705-2	chr16	67619205	67620205	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178721, intron 1 of 9)	intron (NM_178721, intron 1 of 9)	1203.0	NM_001347247	239857.0	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8838906-2	chr4	8838406	8839406	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 15 of 36)	intron (NM_001355382, intron 15 of 36)	87582.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31181956-2	chr2	31181456	31182456	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178760, intron 9 of 17)	RLTR31D_MM|LTR|ERVK	29640.0	NM_178760	277463.0	Mm.236074	NM_178760	ENSMUSG00000000194	Gpr107	9930033D15Rik|AI790205|C530034M11|mKIAA1624	G protein-coupled receptor 107	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77825099-2	chr11	77824599	77825599	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011586, intron 13 of 39)	intron (NM_011586, intron 13 of 39)	23801.0	NM_001291215	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80157292-2	chr10	80156792	80157792	+	665.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021565, exon 9 of 9)	3' UTR (NM_021565, exon 9 of 9)	7610.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73799435-2	chr13	73798935	73799935	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 14 of 24)	intron (NM_001360694, intron 14 of 24)	35738.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155670384-2	chr4	155669884	155670884	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR9D|LTR|ERVK	-1130.0	NM_001256107	76580.0	Mm.235738	NM_145124	ENSMUSG00000029060	Mib2	2210008I11Rik|Zzank1|skd	mindbomb E3 ubiquitin protein ligase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30591692-2	chr7	30591201	30592201	+	665.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_021397, exon 2 of 6)	exon (NM_021397, exon 2 of 6)	1241.0	NM_021397	58206.0	Mm.116789	NM_021397	ENSMUSG00000006310	Zbtb32	4930524C15Rik|FAXF|FAZF|PLZP|Rog|Tzfp	zinc finger and BTB domain containing 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93816538-2	chr1	93816038	93817038	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025454, intron 6 of 7)	intron (NM_025454, intron 6 of 7)	-8702.0	NM_178882	98314.0	Mm.383401	NM_178882	ENSMUSG00000073609	D2hgdh	AA408776|AA408778|AI325464	D-2-hydroxyglutarate dehydrogenase	protein-coding	0.0	0.0	3.5	0.0	0.0	2.0
Merged-chr1-7745811-1	chr1	7745311	7746311	+	665.0	f1_c57bl6.idr	Intergenic	RLTR1A2_MM|LTR|ERV1	656891.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.0	1.0	1.0	1.0	0.0	0.0
Merged-chr11-20142723-2	chr11	20142217	20143217	+	665.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-29766.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	1.5	0.0	0.0	4.0	10.0	2.5
Merged-chr8-76991683-2	chr8	76991183	76992183	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083906, intron 2 of 8)	intron (NM_001083906, intron 2 of 8)	89175.0	NM_001083906	110784.0	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90032964-2	chr7	90032464	90033464	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 1 of 5)	MTE-int|LTR|ERVL-MaLR	3805.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	34.0	90.5	81.0	46.0	119.0	78.5
Merged-chr1-153930515-2	chr1	153930015	153931015	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30586.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135715356-2	chr7	135714856	135715856	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081117, intron 1 of 13)	intron (NM_001081117, intron 1 of 13)	1023.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-83985550-2	chr18	83985050	83986050	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	101012.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172203759-3	chr1	172203250	172204250	+	665.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001329871, intron 1 of 3)	intron (NM_001329871, intron 1 of 3)	3054.0	NM_001329871	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	16.5	9.5	8.5	8.0	13.5	10.5
Merged-chr15-39772303-2	chr15	39771803	39772803	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022722, intron 9 of 9)	RMER13B|LTR|ERVK	-24742.0	NR_045788	100503072.0	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	-	predicted gene 16291	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29543750-2	chr6	29543250	29544250	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177296, intron 21 of 22)	intron (NM_177296, intron 21 of 22)	14468.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-72958308-2	chr9	72957808	72958808	+	665.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026314)	promoter-TSS (NM_026314)	-477.0	NM_026314	67685.0	Mm.31817	NM_026314	ENSMUSG00000092192	Dyx1c1	1700010I24Rik|Dnaaf4|EKN1|b2b811.1Clo|b2b811Clo	dyslexia susceptibility 1 candidate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17652940-1	chr6	17652440	17653440	+	665.0	f0_balb.idr	intron (NM_007604, intron 3 of 9)	intron (NM_007604, intron 3 of 9)	15930.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	5.5	22.5	13.5	5.0	25.5	7.5
Merged-chr10-78494307-2	chr10	78493807	78494807	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-29359.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-124112949-2	chr1	124112449	124113449	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-67390.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	1.5	2.5	0.0	0.0	0.0	0.0
Merged-chr13-107763342-1	chr13	107762842	107763842	+	665.0	f0_balb.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	75945.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-193632756-2	chr1	193632254	193633254	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-125224.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	1.0	0.0	1.0	0.0	0.0	0.0
Merged-chr5-124082545-2	chr5	124082045	124083045	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019875, intron 4 of 11)	intron (NM_019875, intron 4 of 11)	13253.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61707200-1	chr14	61706700	61707700	+	665.0	f1_balb.idr	Intergenic	Intergenic	-24827.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	20.0	21.0	21.5	7.0	15.5	15.5
Merged-chr14-31214985-2	chr14	31214485	31215485	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2888.0	NM_001025379	218877.0	Mm.27812	NM_001025379	ENSMUSG00000021904	Sema3g	AK129018	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116107683-2	chr6	116107183	116108183	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	85691.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32585581-2	chr9	32585081	32586081	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44129.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-172461187-2	chr2	172460687	172461687	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025542, intron 5 of 8)	MTD|LTR|ERVL-MaLR	-2591.0	NM_001039560	654821.0	Mm.389337	NM_001039560	ENSMUSG00000074569	Gcnt7	A330041C17Rik|gnt	glucosaminyl (N-acetyl) transferase family member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118872059-2	chr9	118871543	118872543	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 11 of 13)	intron (NM_001113514, intron 11 of 13)	-54493.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	4.0	8.5	9.0	0.5	10.0	6.0
Merged-chr13-32934757-1	chr13	32934257	32935257	+	665.0	f0_c57.idr	Intergenic	MLTR25C|LTR|ERVK	-30756.0	NM_011454	20708.0	Mm.36526	NM_011454	ENSMUSG00000042842	Serpinb6b	NK13|Spi12|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-30591650-1	chr12	30591150	30592150	+	665.0	f1_balb.idr	TTS (NM_172049)	TTS (NM_172049)	7207.0	NM_172049	211986.0	Mm.34035	NM_172049	ENSMUSG00000043061	Tmem18	BC024093	transmembrane protein 18	protein-coding	4.0	0.0	4.0	2.5	0.0	1.0
Merged-chr10-75830383-1	chr10	75829883	75830883	+	665.0	f0_balb.idr	Intergenic	RLTR11A2|LTR|ERVK	4498.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139578338-1	chr4	139577838	139578838	+	665.0	f1_c57bl6.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	3618.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	7.5	9.5	3.5	0.0	5.5	3.5
Merged-chr11-79881274-1	chr11	79880774	79881774	+	665.0	f1_balb.idr	Intergenic	Intergenic	81113.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	0.0	0.0	0.0	3.0	11.0	0.0
Merged-chr1-170173152-2	chr1	170172652	170173652	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133806, intron 1 of 10)	B1_Mus2|SINE|Alu	1812.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173673683-3	chr1	173673172	173674172	+	665.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162938)	promoter-TSS (NM_001162938)	-8.0	NM_001162938	100033459.0	Mm.303377	NM_001162938	ENSMUSG00000066677	Ifi208	9830148g24rik|E430029J22Rik|NG2creBAC|Pydc3|Pyr-rv1|Tg(Cspg4-cre)1Akik	interferon activated gene 208	protein-coding	8.0	23.5	34.0	14.5	40.5	32.5
Merged-chr7-142397410-2	chr7	142396919	142397919	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9549.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	60.5	122.0	95.0	25.5	83.5	84.0
Merged-chr2-93988688-1	chr2	93988188	93989188	+	665.0	f0_balb.idr	intron (NM_026944, intron 8 of 9)	intron (NM_026944, intron 8 of 9)	8654.0	NR_045827	70852.0	Mm.437014	NR_045827	ENSMUSG00000027196	Alkbh3os1	4921507L20Rik	alkB homolog 3, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-149245634-1	chr5	149245134	149246134	+	665.0	f0_balb.idr	Intergenic	Intergenic	-19370.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101763818-2	chr13	101763318	101764318	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 1 of 15)	intron (NM_001077495, intron 1 of 15)	4399.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4131967-2	chr19	4131467	4132467	+	665.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025889, exon 7 of 7)	3' UTR (NM_025889, exon 7 of 7)	6007.0	NM_025889	66990.0	Mm.276255	NM_025889		Tmem134	2410001H17Rik|AI463452	transmembrane protein 134	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25463800-2	chr14	25463300	25464300	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	4615.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103352427-2	chr15	103351927	103352927	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001314041, intron 16 of 30)	intron (NM_001314041, intron 16 of 30)	-1902.0	NR_105928	102466775.0		NR_105928	ENSMUSG00000098419	Mir6963	Gm27724|mmu-mir-6963	microRNA 6963	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72939439-2	chr6	72938880	72939880	+	664.950012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18852.0	NM_001039392	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	0.0	1.5	0.0	3.0	3.0	2.0
Merged-chr10-99253579-3	chr10	99253079	99254079	+	664.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9652.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34851297-2	chr18	34850797	34851797	+	664.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9910.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-56938203-2	chr9	56937703	56938703	+	664.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133976, exon 1 of 1)	3' UTR (NM_133976, exon 1 of 1)	703.0	NM_133976	102462.0	Mm.12864	NM_133976	ENSMUSG00000032288	Imp3	1190002L16Rik|AI256594	IMP3, U3 small nucleolar ribonucleoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69774440-2	chr11	69773940	69774940	+	664.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029348, intron 1 of 3)	intron (NM_029348, intron 1 of 3)	8528.0	NM_029348	75580.0	Mm.426361	NM_029348	ENSMUSG00000018750	Zbtb4	2310026P19Rik|9230111I22Rik|mKIAA1538	zinc finger and BTB domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118685228-2	chr9	118684695	118685695	+	664.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 13 of 27)	MTD|LTR|ERVL-MaLR	-26497.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	7.5	4.5	0.0	0.0	0.0
Merged-chr3-52758754-2	chr3	52758254	52759254	+	664.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_038079, intron 1 of 3)	intron (NR_038079, intron 1 of 3)	19030.0	NR_038079	329639.0	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	0.0	0.0	0.5	0.0	0.5	0.5
Merged-chr2-166625259-2	chr2	166624759	166625759	+	664.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 5 of 39)	intron (NM_177782, intron 5 of 39)	60737.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3744232-3	chr12	3743753	3744753	+	664.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 12 of 17)	intron (NM_001162465, intron 12 of 17)	-62727.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-91051807-4	chr8	91051328	91052328	+	664.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001310530, exon 38 of 38)	exon (NM_001310530, exon 38 of 38)	-18229.0	NM_001282001	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	8.0	21.0	13.5	2.0	19.5	14.0
Merged-chr7-98190155-2	chr7	98189655	98190655	+	664.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	9320.0	NM_001081167	272411.0	Mm.98333	NM_001081167	ENSMUSG00000074004	B3gnt6	BC039789|Core-3|Core3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67419598-2	chr5	67419113	67420113	+	664.75	f0_balb.idr|f1_balb.idr	intron (NM_001164806, intron 1 of 4)	intron (NM_001164806, intron 1 of 4)	8186.0	NM_001164806	666938.0	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	15.0	5.0	5.0	1.5	5.0	9.5
Merged-chr10-127608588-2	chr10	127608163	127609163	+	664.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 3 of 88)	intron (NM_008512, intron 3 of 88)	12485.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	7.5	32.0	34.0	12.0	34.5	36.5
Merged-chr2-167057201-2	chr2	167056701	167057701	+	664.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033196, intron 2 of 13)	B3A|SINE|B2	-5733.0	NR_138563	68949.0	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103013933-2	chr14	103013433	103014433	+	664.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 2 of 2)	ORR1A2|LTR|ERVL-MaLR	19870.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-57533293-2	chr14	57532793	57533793	+	664.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_145837, intron 2 of 2)	intron (NM_145837, intron 2 of 2)	8464.0	NM_145837	239114.0	Mm.390726	NM_145837	ENSMUSG00000050222	Il17d	AI462269|IL-17D	interleukin 17D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27281268-6	chr3	27280805	27281805	+	664.722229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35772.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25546332-3	chr15	25545818	25546818	+	664.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76232.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-57138204-3	chr19	57137710	57138710	+	664.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001103177, intron 4 of 21)	(TTTTG)n|Simple_repeat|Simple_repeat	-19186.0	NM_001103178	226251.0	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	0.0	3.0	0.0	0.0	0.0	1.5
Merged-chr3-68717498-1	chr3	68716998	68717998	+	664.666687	f0_balb.idr	Intergenic	Intergenic	26074.0	NM_008351	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20699364-3	chr9	20698878	20699878	+	664.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357639, intron 1 of 5)	LTR33A_|LTR|ERVL	27625.0	NM_001357635	244723.0	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-53650928-3	chr9	53650402	53651402	+	664.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161618, intron 3 of 17)	intron (NM_001161618, intron 3 of 17)	16605.0	NM_001161618	75717.0	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-64628306-1	chr11	64627806	64628806	+	664.666687	f0_balb.idr	Intergenic	L1MC4a|LINE|L1	-191632.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	2.5	6.0	16.5	8.0	4.0	5.5
Merged-chr8-116923707-2	chr8	116923207	116924207	+	664.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_028131, intron 2 of 11)	ID_B1|SINE|B4	1967.0	NM_028131	72155.0	Mm.23185	NM_028131	ENSMUSG00000031756	Cenpn	2610510J17Rik|AI426416|AW545024	centromere protein N	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62320954-2	chr10	62320454	62321454	+	664.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010438, intron 4 of 21)	intron (NM_010438, intron 4 of 21)	19467.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70782435-2	chr14	70781917	70782917	+	664.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	8036.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	13.0	10.5	2.0	19.5	22.5	12.0
Merged-chr11-70229960-2	chr11	70229460	70230460	+	664.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007528)	promoter-TSS (NM_007528)	-162.0	NM_007528	12029.0	Mm.12930	NM_007528	ENSMUSG00000000317	Bcl6b	Bazf	B cell CLL/lymphoma 6, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52648065-2	chr13	52647565	52648565	+	664.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001198977, exon 14 of 14)	3' UTR (NM_001198977, exon 14 of 14)	51183.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-93310376-2	chr15	93309876	93310876	+	664.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_024189, intron 2 of 3)	MTC|LTR|ERVL-MaLR	26559.0	NR_028315	67057.0	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152830764-2	chr1	152830264	152831264	+	664.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 10 of 15)	intron (NM_010877, intron 10 of 15)	30611.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84532478-3	chr2	84531970	84532970	+	664.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	-25597.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17906130-3	chr17	17905632	17906632	+	664.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18308.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	4.0	1.0	3.0	0.0	0.0	0.0
Merged-chr18-60749249-2	chr18	60748749	60749749	+	664.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008306)	promoter-TSS (NM_008306)	-584.0	NM_008306	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	26.0	23.5	8.0	7.5	5.5	22.5
Merged-chr4-155707058-2	chr4	155706558	155707558	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026899, intron 1 of 4)	intron (NM_026899, intron 1 of 4)	2243.0	NM_026899	68991.0	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96058775-2	chr3	96058275	96059275	+	664.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013841)	promoter-TSS (NM_013841)	-320.0	NM_013841	22365.0	Mm.263185	NM_013841	ENSMUSG00000015747	Vps45	AI462172|AW554165|mVps45	vacuolar protein sorting 45	protein-coding	5.0	35.5	14.5	5.5	42.5	18.0
Merged-chr9-20744096-2	chr9	20743596	20744596	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357639, intron 1 of 5)	intron (NM_001357639, intron 1 of 5)	2200.0	NM_001357639	244723.0	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81057545-2	chr10	81057045	81058045	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358550, intron 1 of 11)	intron (NM_001358550, intron 1 of 11)	2631.0	NM_001358549	52551.0	Mm.30068	NM_024499	ENSMUSG00000004937	Sgta	5330427H01Rik|AI194281|D10Ertd190e|Sgt|Stg	small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29361572-2	chr17	29361072	29362072	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013710, intron 1 of 15)	intron (NM_013710, intron 1 of 15)	658.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73305169-2	chr17	73304669	73305669	+	664.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94127.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13623190-2	chr8	13622690	13623690	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 2 of 23)	intron (NM_009025, intron 2 of 23)	54397.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17661416-2	chr10	17660916	17661916	+	664.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61812.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27676042-2	chr2	27675542	27676542	+	664.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1159.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112802202-2	chr12	112801702	112802702	+	664.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6773.0	NM_145450	217887.0	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Clba1|Flj20080	cDNA sequence BC022687	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31484412-2	chr2	31483912	31484912	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_002687, intron 5 of 15)	intron (NR_002687, intron 5 of 15)	14104.0	NR_002687	432466.0	Mm.333323	NR_002687	ENSMUSG00000046687	Gm5424	EG432466	argininosuccinate synthase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67134443-2	chr17	67133943	67134943	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 2 of 32)	intron (NM_001357625, intron 2 of 32)	-108208.0	NR_049205	100885844.0		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129258975-4	chr2	129258484	129259484	+	664.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38228.0	NM_181589	70466.0	Mm.45785	NM_181589	ENSMUSG00000048327	Ckap2l	2010016H04Rik|2610318C08Rik|AV070319|radmis|rdm	cytoskeleton associated protein 2-like	protein-coding	0.5	6.0	1.5	2.0	1.5	6.0
Merged-chr5-121816674-2	chr5	121816174	121817174	+	664.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008507, exon 8 of 8)	3' UTR (NM_008507, exon 8 of 8)	2599.0	NR_105998	102465624.0		NR_105998	ENSMUSG00000099063	Mir7031	Gm27859|mmu-mir-7031	microRNA 7031	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26934653-2	chr17	26934153	26935153	+	664.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105934)	promoter-TSS (NR_105934)	-819.0	NR_105934	102465584.0		NR_105934	ENSMUSG00000098510	Mir6968	Gm27666|mmu-mir-6968	microRNA 6968	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34212128-1	chr17	34211628	34212628	+	664.5	f1_balb.idr	intron (NM_011530, intron 6 of 11)	intron (NM_011530, intron 6 of 11)	7649.0	NM_011530	21355.0	Mm.14814	NM_011530	ENSMUSG00000024339	Tap2	ABC18|AI462429|APT2|Abcb3|Ham-2|Ham2|MTP2|PSF2|RING11|Tap-2|Y1|jas	transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	0.0	4.0	2.0	0.0	0.5	1.5
Merged-chr17-34116817-2	chr17	34116317	34117317	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_037970, intron 2 of 12)	intron (NR_037970, intron 2 of 12)	3083.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	1.5	4.5	1.0	3.5	2.0	1.0
Merged-chr2-55611059-2	chr2	55610559	55611559	+	664.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	175089.0	NM_008426	16519.0	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-76393086-2	chr5	76392586	76393586	+	664.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29309.0	NM_019515	56183.0	Mm.154879	NM_019515	ENSMUSG00000029236	Nmu	-	neuromedin U	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16397306-2	chr7	16396806	16397806	+	664.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3890.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127801685-2	chr7	127801185	127802185	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040684, intron 3 of 6)	intron (NM_001040684, intron 3 of 6)	1076.0	NM_001040684	101502.0	Mm.157103	NM_133943	ENSMUSG00000042289	Hsd3b7	AI195443|BB098564	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165736787-2	chr1	165736287	165737287	+	664.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_A_Mam|LINE|RTE-X	-26971.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-17079757-2	chr4	17079257	17080257	+	664.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-773136.0	NR_135158	17389.0	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT-MMP 3|MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-27259612-2	chr8	27259112	27260112	+	664.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007918)	promoter-TSS (NM_007918)	-715.0	NM_007918	13685.0	Mm.6700	NM_007918	ENSMUSG00000031490	Eif4ebp1	4e-bp1|AA959816|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11137054-2	chr16	11136554	11137554	+	664.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027502, exon 23 of 23)	non-coding (NR_027502, exon 23 of 23)	-2522.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-22777620-1	chr2	22777120	22778120	+	664.5	f0_balb.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	3293.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-92544025-2	chr6	92543525	92544525	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081146, intron 2 of 8)	intron (NM_001081146, intron 2 of 8)	-9164.0	NM_001134459	243548.0	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77652064-2	chr9	77651564	77652564	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172925, intron 2 of 2)	L1MA5A|LINE|L1	15332.0	NM_172925	244923.0	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	0.0	0.0	0.5	1.5	0.0	0.0
Merged-chr4-129808537-2	chr4	129808052	129809052	+	664.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-11927.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	28.0	88.5	68.5	2.5	54.0	30.5
Merged-chr5-142451742-2	chr5	142451242	142452242	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 5 of 8)	intron (NM_199068, intron 5 of 8)	-12189.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116601145-3	chr3	116600647	116601647	+	664.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030016, intron 1 of 11)	intron (NM_030016, intron 1 of 11)	6189.0	NM_001289571	72776.0	Mm.440836	NM_028349	ENSMUSG00000027959	Sass6	2810453L12Rik	SAS-6 centriolar assembly protein	protein-coding	2.5	5.0	4.5	0.5	2.5	6.0
Merged-chr2-35165821-2	chr2	35165321	35166321	+	664.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_012018, exon 33 of 44)	exon (NM_012018, exon 33 of 44)	33587.0	NM_001290635	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65528925-2	chr9	65528425	65529425	+	664.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	51162.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80072471-2	chr10	80071971	80072971	+	664.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_183426, exon 5 of 32)	exon (NM_183426, exon 5 of 32)	2968.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5741341-2	chr19	5740841	5741841	+	664.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008520, exon 2 of 28)	5' UTR (NM_008520, exon 2 of 28)	437.0	NM_008520	16998.0	Mm.182396	NM_008520	ENSMUSG00000024940	Ltbp3	Ltbp2|mFLJ00070	latent transforming growth factor beta binding protein 3	protein-coding	0.0	1.0	0.0	1.5	0.0	0.0
Merged-chr4-147849216-2	chr4	147848716	147849716	+	664.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355730)	promoter-TSS (NM_001355730)	-798.0	NM_198619	242747.0	Mm.332053	NM_198619	ENSMUSG00000059423	Zfp933	2810408P10Rik	zinc finger protein 933	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80419717-2	chr10	80419217	80420217	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164153, intron 6 of 18)	intron (NM_001164153, intron 6 of 18)	-12896.0	NM_025650	66594.0	Mm.379119	NM_025650	ENSMUSG00000020163	Uqcr11	0710008D09Rik|AL022707|Uqcr	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-45385069-2	chr5	45384573	45385573	+	664.5	f0_balb.idr|f1_balb.idr	intron (NR_131933, intron 1 of 5)	intron (NR_131933, intron 1 of 5)	39327.0	NR_131933	52401.0	Mm.33854	NR_131933	ENSMUSG00000029092	D5Ertd615e	4930435H24Rik	DNA segment, Chr 5, ERATO Doi 615, expressed	ncRNA	0.0	0.0	4.5	4.5	1.5	4.0
Merged-chr5-143327920-2	chr5	143327420	143328420	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153112, intron 2 of 7)	B4A|SINE|B4	1318.0	NM_001359445	72881.0	Mm.261606	NM_028379	ENSMUSG00000001844	Zdhhc4	1810021D01Rik|2900029I10Rik|DHHC-4	zinc finger, DHHC domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73254033-2	chr14	73253533	73254533	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 17 of 26)	intron (NM_009029, intron 17 of 26)	16142.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31360407-2	chr6	31359907	31360907	+	664.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38366.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33923959-2	chr16	33923459	33924459	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	43079.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-104731506-2	chr2	104730988	104731988	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144804, intron 1 of 8)	B3|SINE|B2	11313.0	NM_144804	211896.0	Mm.288805	NM_144804	ENSMUSG00000027173	Depdc7	AV216087	DEP domain containing 7	protein-coding	28.0	56.5	33.0	24.0	62.5	48.5
Merged-chr2-121442018-2	chr2	121441507	121442507	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145973, intron 2 of 10)	intron (NM_145973, intron 2 of 10)	594.0	NM_145973	269344.0	Mm.330522	NM_145973	ENSMUSG00000027246	Ell3	A930015D22Rik	elongation factor RNA polymerase II-like 3	protein-coding	25.5	8.5	6.5	2.0	5.0	0.0
Merged-chr2-72498106-2	chr2	72497606	72498606	+	664.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	21887.0	NM_025866	66953.0	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108483035-2	chr9	108482535	108483535	+	664.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008483, exon 11 of 33)	exon (NM_008483, exon 11 of 33)	3173.0	NM_008483	16779.0	Mm.27560	NM_008483	ENSMUSG00000052911	Lamb2	AW211941|Lamb-2|Lams|npht	laminin, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79890338-2	chr11	79889838	79890838	+	664.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72049.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	1.0	0.0	0.0	2.0	0.0	3.0
Merged-chr9-46011600-2	chr9	46011100	46012100	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357241, intron 1 of 5)	intron (NM_001357241, intron 1 of 5)	1090.0	NM_001357241	18475.0	Mm.200859	NM_008775	ENSMUSG00000003131	Pafah1b2	2610005M20Rik|AI747451|AU021353|Pafahb|mus[b]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5242726-2	chr17	5242226	5243226	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	176041.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77054981-2	chr18	77054481	77055481	+	664.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7685.0	NM_027721	71206.0	Mm.35803	NM_027721	ENSMUSG00000025420	Katnal2	3110023G01Rik|4933439B08Rik	katanin p60 subunit A-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135675080-2	chr4	135674580	135675580	+	664.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_A|LTR|ERVK	-11377.0	NM_174851	242700.0	Mm.259623	NM_174851	ENSMUSG00000062157	Ifnlr1	CRF2-12|Il28ra	interferon lambda receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-127143635-2	chr6	127143135	127144135	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009829, intron 3 of 4)	intron (NM_009829, intron 3 of 4)	-5754.0	NR_040274	77558.0	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30619284-2	chr14	30618784	30619784	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	6924.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	10.0	4.0	13.0	6.5	3.0	6.5
Merged-chr16-30603621-2	chr16	30603121	30604121	+	664.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177632)	TTS (NM_177632)	3898.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100934522-2	chr7	100934022	100935022	+	664.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-2361.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	0.0	0.0	0.0	4.0	6.0	2.0
Merged-chr11-43784438-2	chr11	43783938	43784938	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007416, intron 1 of 1)	intron (NM_007416, intron 1 of 1)	-36465.0	NM_133795	66827.0	Mm.271974	NM_133795	ENSMUSG00000041278	Ttc1	4833412C19Rik|C79328|TPR1	tetratricopeptide repeat domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28740949-2	chr17	28740449	28741449	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168508, intron 9 of 11)	intron (NM_001168508, intron 9 of 11)	-28368.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-21950877-2	chr6	21950377	21951377	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311061, intron 2 of 11)	intron (NM_001311061, intron 2 of 11)	1262.0	NM_023626	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112210265-2	chr5	112209765	112210765	+	664.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045377)	TTS (NR_045377)	3502.0	NR_045378	75569.0	Mm.243721	NR_045377	ENSMUSG00000101683	1700028D13Rik	-	RIKEN cDNA 1700028D13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43445163-2	chr4	43444663	43445663	+	664.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_011571, intron 5 of 9)	intron (NM_011571, intron 5 of 9)	2886.0	NM_011571	21754.0	Mm.485441	NM_011571	ENSMUSG00000028458	Tesk1	AI326901	testis specific protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-143055069-2	chr2	143054569	143055569	+	664.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8000.0	NM_021335	20639.0	Mm.1323	NM_021335	ENSMUSG00000008333	Snrpb2	2810052G09Rik	U2 small nuclear ribonucleoprotein B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27587893-2	chr7	27587382	27588382	+	664.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-3670.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	0.5	10.0	7.5	2.5	7.5	6.5
Merged-chr11-108074385-2	chr11	108073904	108074904	+	664.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 3 of 16)	Lx8|LINE|L1	77556.0	NR_106082	102465705.0		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-43383190-3	chr15	43382694	43383694	+	664.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93842.0	NR_046064	100038728.0	Mm.244168	NR_046064	ENSMUSG00000072592	Gm10373	-	predicted gene 10373	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-86020474-1	chr13	86019974	86020974	+	664.333313	f0_balb.idr	Intergenic	Lx|LINE|L1	26321.0	NM_007749	12867.0	Mm.378898	NM_007749	ENSMUSG00000017778	Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding	22.0	3.0	5.0	3.0	13.5	20.0
Merged-chr5-120907005-4	chr5	120906529	120907529	+	664.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145211, intron 1 of 6)	MIR3|SINE|MIR	496.0	NM_145211	246730.0	Mm.14301	NM_145211	ENSMUSG00000052776	Oas1a	L3	2'-5' oligoadenylate synthetase 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87504495-3	chr3	87503952	87504952	+	664.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21126.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	2.5	7.0	1.5	3.0	4.5	1.5
Merged-chr10-128488948-2	chr10	128488448	128489448	+	664.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001114096, exon 29 of 29)	exon (NM_001114096, exon 29 of 29)	4061.0	NM_001317220	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-7906464-2	chr17	7905964	7906964	+	664.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19536.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108844874-2	chr3	108844384	108845384	+	664.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-4382.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114842040-4	chr6	114841545	114842545	+	664.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	79776.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73310943-2	chr13	73310443	73311443	+	664.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17539.0	NR_033306	407785.0	Mm.29897	NM_010888	ENSMUSG00000021606	Ndufs6	BC059730|IP13	NADH dehydrogenase (ubiquinone) Fe-S protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-68929634-3	chr18	68929145	68930145	+	664.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038051, intron 3 of 6)	intron (NR_038051, intron 3 of 6)	21883.0	NR_038051	78931.0	Mm.160155	NR_038051		4930546C10Rik	-	RIKEN cDNA 4930546C10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-74965260-2	chr9	74964760	74965760	+	664.166687	f1_balb.idr|f1_c57bl6.idr	intron (NR_153342, intron 2 of 12)	intron (NR_153342, intron 2 of 12)	-10851.0	NM_153584	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	0.0	0.0	1.0	0.0	1.0	1.5
Merged-chr10-61052337-3	chr10	61051809	61052809	+	664.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21006.0	NR_040638	327760.0	Mm.23529	NR_040638	ENSMUSG00000093568	Gm20611	4930565A17	predicted gene 20611	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11462982-2	chr16	11462482	11463482	+	664.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	57334.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-37791895-2	chr15	37791395	37792395	+	664.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359844, intron 1 of 7)	CpG	105.0	NM_001170866	52589.0	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6098067-4	chr17	6097551	6098551	+	664.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8779.0	NM_001103181	68842.0	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54796850-2	chr13	54796350	54797350	+	664.125	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028841)	TTS (NM_028841)	7445.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	3.5	0.0	0.0	3.5	0.0	0.5
Merged-chr10-99422466-3	chr10	99421979	99422979	+	664.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	159248.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117355985-3	chr5	117355508	117356508	+	664.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1297.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	3.0	7.0	8.5	3.0	7.0	8.5
Merged-chr7-34166981-4	chr7	34166463	34167463	+	664.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016682, intron 1 of 16)	RSINE1|SINE|B4	1566.0	NM_016682	50995.0	Mm.27560	NM_016682	ENSMUSG00000052997	Uba2	AA986091|Arx|Sae2|UBA1|Ubl1a2|Uble1b	ubiquitin-like modifier activating enzyme 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8233946-3	chr17	8233451	8234451	+	664.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2092.0	NM_001190333	12458.0	Mm.8007	NM_009835	ENSMUSG00000040899	Ccr6	CC-CKR-6|CCR-6|Cmkbr6|KY411	chemokine (C-C motif) receptor 6	protein-coding	1.0	4.0	1.0	0.0	5.0	2.0
Merged-chr11-31741755-1	chr11	31741255	31742255	+	664.0	f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-69893.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	2.5	2.0	2.5	2.5	0.5	0.0
Merged-chr3-107105132-1	chr3	107104632	107105632	+	664.0	f0_balb.idr	exon (NM_008417, exon 3 of 3)	exon (NM_008417, exon 3 of 3)	3565.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	1.5	8.5	16.5	4.0	7.5	17.0
Merged-chr18-21653259-3	chr18	21652755	21653755	+	664.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081403)	promoter-TSS (NM_001081403)	-887.0	NM_001081403	225266.0	Mm.436836	NM_001081403	ENSMUSG00000042514	Klhl14	6330403N15Rik|AI785250|printor	kelch-like 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121531252-2	chr10	121530752	121531752	+	664.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-55002.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0.0	1.0	0.0	0.0	1.0	0.0
Merged-chr6-120789177-2	chr6	120788677	120789677	+	664.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081048, intron 5 of 9)	B2_Mm2|SINE|B2	15409.0	NM_001081048	71803.0	Mm.425340	NM_001081048	ENSMUSG00000004902	Slc25a18	1500015I14Rik|AW125787	solute carrier family 25 (mitochondrial carrier), member 18	protein-coding	0.0	2.0	1.5	0.0	0.0	0.0
Merged-chr6-94392757-1	chr6	94392257	94393257	+	664.0	f1_c57bl6.idr	Intergenic	B3|SINE|B2	-107557.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	0.5	0.0	0.0	0.0	0.0	1.5
Merged-chr6-53285890-2	chr6	53285390	53286390	+	664.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1413.0	NM_001327821	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.0	2.5	0.5	1.5	0.0	0.0
Merged-chr6-89200919-3	chr6	89200406	89201406	+	664.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15273.0	NR_033190	330379.0	Mm.297741	NM_201356		Gm839	-	predicted gene 839	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138196303-2	chr5	138195803	138196803	+	664.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177878)	TTS (NM_177878)	1989.0	NM_177878	330216.0	Mm.19719	NM_177878	ENSMUSG00000049285	Mblac1	-	metallo-beta-lactamase domain containing 1	protein-coding	0.5	15.5	3.5	10.5	47.0	15.0
Merged-chr6-124758468-2	chr6	124757968	124758968	+	664.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1981.0	NM_007881	13498.0	Mm.333380	NM_007881	ENSMUSG00000004263	Atn1	Atr1|Drpla|atrophin-1	atrophin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114015632-3	chr7	114015179	114016179	+	664.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145584, intron 6 of 15)	intron (NM_145584, intron 6 of 15)	102102.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	13.5	0.0	8.0	5.5	8.0	9.5
Merged-chr10-117948102-2	chr10	117947602	117948602	+	664.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045342, exon 4 of 4)	non-coding (NR_045342, exon 4 of 4)	22643.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	2.0	1.0	1.0	4.0	0.0	1.0
Merged-chr7-19210387-1	chr7	19209887	19210887	+	664.0	f1_balb.idr	Intergenic	RSINE1|SINE|B4	-2151.0	NM_175668	319197.0	Mm.135984	NM_175668	ENSMUSG00000044317	Gpr4	-	G protein-coupled receptor 4	protein-coding	0.0	0.0	3.0	0.0	2.0	0.0
Merged-chr4-135358870-2	chr4	135358370	135359370	+	664.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5656.0	NM_001130477	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20107008-2	chr11	20106508	20107508	+	664.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146243, intron 1 of 8)	intron (NM_146243, intron 1 of 8)	5943.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	34.0	183.5	74.5	34.0	179.5	74.5
Merged-chr13-44384439-2	chr13	44383939	44384939	+	664.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55288.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr3-108917018-2	chr3	108916518	108917518	+	664.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5289.0	NM_001356292	66921.0	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr18-23433441-2	chr18	23432939	23433939	+	664.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361217, intron 1 of 20)	Lx3_Mus|LINE|L1	18030.0	NM_001361217	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	0.5	0.0	5.0	1.0	0.5	0.0
Merged-chr9-78821745-3	chr9	78821253	78822253	+	664.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	206207.0	NM_153098	235505.0	Mm.32955	NM_153098	ENSMUSG00000046186	Cd109	9930012E15Rik|AI480638|GARP	CD109 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132526745-2	chr2	132526245	132527245	+	664.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36017.0	NR_028286	70371.0	Mm.394667	NR_028286	ENSMUSG00000086379	1700026D11Rik	-	RIKEN cDNA 1700026D11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120365094-2	chr6	120364601	120365601	+	664.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045558)	promoter-TSS (NR_045558)	-732.0	NR_045558	67200.0	Mm.45767	NM_026028	ENSMUSG00000030177	Ccdc77	2400002C23Rik|2700091N06Rik|AV168274	coiled-coil domain containing 77	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9429658-2	chr13	9429158	9430158	+	664.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	153133.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34964937-2	chr17	34964437	34965437	+	664.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5699.0	NM_010478	15511.0	Mm.372314	NM_010478	ENSMUSG00000090877	Hspa1b	Hsp70|Hsp70-1|Hsp70.1|hsp68	heat shock protein 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106127150-2	chr11	106126650	106127650	+	664.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 6 of 15)	B2_Mm1a|SINE|B2	32777.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19634890-2	chr7	19634390	19635390	+	664.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_019649, exon 12 of 14)	exon (NM_019649, exon 12 of 14)	-5452.0	NM_009046	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3055032-2	chr4	3054532	3055532	+	664.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117051.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr7-81201618-2	chr7	81201118	81202118	+	664.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12186.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-106335969-1	chr12	106335469	106336469	+	664.0	f1_balb.idr	Intergenic	Intergenic	111697.0	NR_036593	76639.0	Mm.375609	NR_036593	ENSMUSG00000092066	1700121N20Rik	-	RIKEN cDNA 1700121N20 gene	ncRNA	0.0	1.5	0.0	0.0	1.0	0.0
Merged-chr11-101928184-2	chr11	101927684	101928684	+	664.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24237.0	NR_045806	73887.0	Mm.159084	NR_045806	ENSMUSG00000071818	4930417O22Rik	-	RIKEN cDNA 4930417O22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113001840-2	chr12	113001340	113002340	+	664.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1219.0	NM_028193	72308.0	Mm.196721	NM_028193	ENSMUSG00000011158	Brf1	2510002F24Rik|GTF3B|TAF3C|TAFIII90|TFIIIB90|mTFIIIB90	BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117333162-2	chr8	117332662	117333662	+	664.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-16008.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-106607241-2	chr14	106606741	106607741	+	664.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120721.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35448348-2	chr2	35447848	35448848	+	664.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	13101.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-73552351-2	chr10	73551851	73552851	+	664.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-269516.0	NM_001142760	11994.0	Mm.338933	NM_023115	ENSMUSG00000052613	Pcdh15	BB078305|Gm9815|Ush1f|av|nmf19|roda	protocadherin 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-53478312-1	chr3	53477812	53478812	+	664.0	f1_balb.idr	exon (NM_173382, exon 11 of 13)	exon (NM_173382, exon 11 of 13)	-10481.0	NM_153156	229277.0	Mm.222810	NM_153156	ENSMUSG00000027744	Stoml3	Epb7.2l|SLP3|sro	stomatin (Epb7.2)-like 3	protein-coding	0.0	4.0	0.0	0.0	0.0	0.0
Merged-chr2-27605992-2	chr2	27605492	27606492	+	664.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71209.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37338852-3	chr13	37338347	37339347	+	664.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6498.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	5.5	25.0	13.0	2.5	17.5	18.5
Merged-chr12-8326004-2	chr12	8325504	8326504	+	664.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021429, intron 4 of 6)	intron (NM_021429, intron 4 of 6)	12571.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-104931970-1	chr13	104931470	104932470	+	664.0	f0_balb.idr	Intergenic	Intergenic	-68077.0	NM_029984	77803.0	Mm.159995	NM_029984	ENSMUSG00000042655	Fam159b	A930021C24Rik|Shisal2b	family with sequence similarity 159, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-192943763-1	chr1	192943263	192944263	+	664.0	f1_c57bl6.idr	intron (NM_001301370, intron 4 of 8)	MTD|LTR|ERVL-MaLR	-88011.0	NM_198247	214791.0	Mm.22806	NM_198247	ENSMUSG00000016262	Sertad4	4833404A09|C130018M11Rik	SERTA domain containing 4	protein-coding	18.0	7.0	12.5	17.0	2.0	11.0
Merged-chr6-121224570-3	chr6	121224105	121225105	+	664.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017379, intron 4 of 4)	intron (NM_017379, intron 4 of 4)	13871.0	NM_017379	53857.0	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114399724-2	chr6	114399224	114400224	+	664.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317126, intron 1 of 1)	intron (NM_001317126, intron 1 of 1)	1638.0	NM_001317126	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-48671956-2	chr16	48671456	48672456	+	664.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	100000.0	NM_198297	77647.0	Mm.167298	NM_198297	ENSMUSG00000030775	Trat1	C030046M14Rik|Tcrim|Trim	T cell receptor associated transmembrane adaptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-76961235-2	chr10	76960735	76961735	+	664.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347216, intron 1 of 15)	intron (NM_001347216, intron 1 of 15)	712.0	NM_001347216	59093.0	Mm.272803	NM_021568	ENSMUSG00000001120	Pcbp3	AlphaCP-3	poly(rC) binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-23057970-3	chr19	23057506	23058506	+	664.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83220.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	25.0	66.0	53.5	6.0	14.0	24.5
Merged-chr4-43483459-1	chr4	43482959	43483959	+	664.0	f1_balb.idr	intron (NM_019436, intron 1 of 4)	intron (NM_019436, intron 1 of 4)	250.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	0.0	0.0	0.0	0.0	1.5	0.0
Merged-chr18-61416877-4	chr18	61416347	61417347	+	664.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16416.0	NM_133249	170826.0	Mm.415302	NM_133249	ENSMUSG00000033871	Ppargc1b	4631412G21Rik|Perc	peroxisome proliferative activated receptor, gamma, coactivator 1 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57859488-1	chr15	57858988	57859988	+	664.0	f0_balb.idr	Intergenic	Intergenic	32930.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-68662586-1	chr3	68662086	68663086	+	664.0	f0_balb.idr	Intergenic	Intergenic	-28058.0	NM_001159424	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148166674-2	chr4	148166174	148167174	+	664.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_176848)	TTS (NM_176848)	6006.0	NM_176848	230904.0	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-52821574-1	chr12	52821074	52822074	+	664.0	f1_balb.idr	intron (NM_198111, intron 2 of 13)	Lx8|LINE|L1	122191.0	NM_198111	238161.0	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	0.0	0.0	0.5	0.0	0.0	1.0
Merged-chr8-3331616-2	chr8	3331116	3332116	+	664.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21799.0	NM_001033378	319493.0	Mm.234565	NM_001033378	ENSMUSG00000074497	A430078G23Rik	-	RIKEN cDNA A430078G23 gene	protein-coding	0.0	0.0	0.0	2.0	0.0	0.0
Merged-chr4-8844632-2	chr4	8844132	8845132	+	664.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001277149, exon 21 of 38)	exon (NM_001277149, exon 21 of 38)	93308.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149644205-1	chr4	149643705	149644705	+	664.0	f1_balb.idr	intron (NM_023051, intron 14 of 18)	intron (NM_023051, intron 14 of 18)	11362.0	NR_105990	102465983.0		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr11-120316900-2	chr11	120316400	120317400	+	664.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30513.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181521754-1	chr2	181521254	181522254	+	664.0	f1_c57bl6.idr	intron (NM_001271584, intron 2 of 5)	intron (NM_001271584, intron 2 of 5)	1269.0	NM_001271584	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	13.5	23.0	17.0	17.0	17.5	22.0
Merged-chr9-14379688-2	chr9	14379188	14380188	+	664.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028013, intron 1 of 1)	intron (NM_028013, intron 1 of 1)	1554.0	NM_028013	71946.0	Mm.41423	NM_028013	ENSMUSG00000037419	Endod1	2210414F18Rik|2310067E08Rik|C85344	endonuclease domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47541471-1	chr14	47540971	47541971	+	664.0	f0_balb.idr	3' UTR (NM_172599, exon 10 of 10)	3' UTR (NM_172599, exon 10 of 10)	26963.0	NM_172599	100504663.0	Mm.287279	NM_172599	ENSMUSG00000037526	Atg14	4832427M01|Atg14L|D14Ertd114e|D14Ertd436e	autophagy related 14	protein-coding	17.5	46.5	74.5	10.0	24.5	18.0
Merged-chr10-117067743-2	chr10	117067243	117068243	+	664.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3891.0	NM_007636	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-21712403-1	chr4	21711903	21712903	+	664.0	f0_balb.idr	Intergenic	RMER21A|LTR|ERV1	-15298.0	NM_001290422	51813.0	Mm.278584	NM_016746	ENSMUSG00000028252	Ccnc	AI451004|AU020987|CG1C	cyclin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31074389-1	chr17	31073889	31074889	+	664.0	f1_balb.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	16695.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	235.0	543.0	402.5	229.5	354.5	311.5
Merged-chr12-44202471-3	chr12	44201932	44202932	+	664.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7636.0	NM_013760	27362.0	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43921817-3	chr5	43921388	43922388	+	664.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	53079.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	6.0	17.0	3.5	0.0	2.0	4.0
Merged-chr2-90476860-2	chr2	90476360	90477360	+	664.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	2314.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	16.0	21.5	10.5	5.5	11.0	5.0
Merged-chr11-98962067-2	chr11	98961567	98962567	+	664.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001176528, intron 1 of 7)	intron (NM_001176528, intron 1 of 7)	1596.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-53540224-2	chr9	53539724	53540724	+	664.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081152, intron 1 of 17)	intron (NM_001081152, intron 1 of 17)	3177.0	NM_001081152	244879.0	Mm.116713	NM_001081152	ENSMUSG00000033054	Npat	6820401K01|AI427561|BB112559	nuclear protein in the AT region	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-100293891-2	chr2	100293391	100294391	+	664.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-1330857.0	NM_009020	19374.0	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	4.5	0.0	0.5	0.0	1.5	0.0
Merged-chr11-120730871-2	chr11	120730371	120731371	+	664.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007621, exon 3 of 8)	exon (NM_007621, exon 3 of 8)	1150.0	NM_007621	12409.0	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-181014355-2	chr1	181013820	181014820	+	664.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010145, intron 1 of 8)	ORR1B2|LTR|ERVL-MaLR	3249.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-33371454-2	chr5	33370954	33371954	+	664.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021500, intron 7 of 8)	intron (NM_021500, intron 7 of 8)	-7242.0	NR_153108	71101.0	Mm.132178	NM_027674	ENSMUSG00000037355	Uvssa	4933407H18Rik|D330017J19Rik|Kiaa1530|mKIAA1530	UV stimulated scaffold protein A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78911359-1	chr15	78910859	78911859	+	664.0	f1_balb.idr	exon (NM_001316684, exon 18 of 18)	exon (NM_001316684, exon 18 of 18)	-2560.0	NM_020271	57028.0	Mm.263169	NM_020271	ENSMUSG00000116165	Pdxp	1600027H05Rik|AB041662|PLPP	pyridoxal (pyridoxine, vitamin B6) phosphatase	protein-coding	2.0	1.0	1.0	4.5	4.0	0.0
Merged-chr6-125050483-1	chr6	125049983	125050983	+	664.0	f1_c57bl6.idr	promoter-TSS (NR_130997)	promoter-TSS (NR_130997)	556.0	NM_016845	54137.0	Mm.347910	NM_016845	ENSMUSG00000072770	Acrbp	OY-TES-1|sp32	proacrosin binding protein	protein-coding	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr14-55564340-2	chr14	55563840	55564840	+	663.983337	f1_balb.idr|f1_c57bl6.idr	intron (NR_037572, intron 6 of 14)	intron (NR_037572, intron 6 of 14)	3417.0	NM_001199009	28199.0	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44349122-2	chr7	44348638	44349638	+	663.958374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034115, intron 22 of 24)	intron (NM_001034115, intron 22 of 24)	25892.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25627418-4	chr8	25626915	25627915	+	663.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001735, intron 1 of 9)	B3|SINE|B2	-13162.0	NM_001081269	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22477790-4	chr8	22477320	22478320	+	663.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001012667)	promoter-TSS (NM_001012667)	-941.0	NM_001146117	102032.0	Mm.378231	NM_001012667	ENSMUSG00000031534	Smim19	AI316807|BG694986|EST-c39	small integral membrane protein 19	protein-coding	46.5	88.5	53.5	18.5	95.0	66.5
Merged-chr5-7996879-2	chr5	7996379	7997379	+	663.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36407.0	NM_054098	117167.0	Mm.31403	NM_054098	ENSMUSG00000012428	Steap4	1110021O17Rik|AI481214|Tiarp|Tnfaip9	STEAP family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-40415686-3	chr1	40415195	40416195	+	663.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13875.0	NM_001294171	17082.0	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-169008483-3	chr2	169007969	169008969	+	663.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30200.0	NR_040326	75508.0	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-179760795-4	chr1	179760308	179761308	+	663.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026375, intron 29 of 35)	B1_Mus1|SINE|Alu	43207.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130449393-2	chr2	130448893	130449893	+	663.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163688)	promoter-TSS (NM_001163688)	-885.0	NM_008980	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	1.0	25.0	1.5	11.5	21.5	6.0
Merged-chr19-53323485-2	chr19	53322985	53323985	+	663.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	intron (NM_001360348, intron 1 of 5)	-5928.0	NM_010847	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-86174151-3	chr5	86173643	86174643	+	663.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	-1400.0	NM_172712	231380.0	Mm.34012	NM_172712	ENSMUSG00000035898	Uba6	4930542H01|5730469D23Rik|AU021846|AW124799|E1-L2|Ube1l2	ubiquitin-like modifier activating enzyme 6	protein-coding	1.5	6.5	10.0	5.5	3.0	4.5
Merged-chr16-21646238-3	chr16	21645759	21646759	+	663.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48406.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-55117946-2	chr6	55117446	55118446	+	663.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001288619)	promoter-TSS (NM_001288619)	-33.0	NM_001288620	12922.0	Mm.236081	NM_009953	ENSMUSG00000003476	Crhr2	CRF-R2|CRFR2alpha|CRFR2beta|Crfr2	corticotropin releasing hormone receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98956318-2	chr7	98955818	98956818	+	663.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 12 of 14)	intron (NM_178635, intron 12 of 14)	117473.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.0	4.5	4.0	0.0	3.0	0.0
Merged-chr7-16010100-3	chr7	16009623	16010623	+	663.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10628.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	3.5	18.0	14.0	0.0	13.0	9.5
Merged-chr19-28009985-3	chr19	28009507	28010507	+	663.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360357)	promoter-TSS (NM_001360357)	-234.0	NM_001360357	19726.0	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118897345-2	chr2	118896948	118897948	+	663.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4167.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	0.0	2.5	0.0	3.0	0.0	0.0
Merged-chr3-90000784-2	chr3	90000269	90001269	+	663.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001165984, exon 28 of 28)	3' UTR (NM_001165984, exon 28 of 28)	2009.0	NR_045749	100503469.0	Mm.440636	NR_045749	ENSMUSG00000105552	Gm19710	-	predicted gene, 19710	ncRNA	5.5	21.0	9.5	1.0	7.5	1.5
Merged-chr5-20855311-2	chr5	20854811	20855811	+	663.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172992, intron 1 of 17)	intron (NM_172992, intron 1 of 17)	26813.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3563349-2	chr19	3562849	3563849	+	663.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360430, intron 1 of 22)	intron (NM_001360430, intron 1 of 22)	12400.0	NM_001360430	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-12322159-2	chr12	12321659	12322659	+	663.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 2 of 11)	MTB_Mm|LTR|ERVL-MaLR	60020.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60896570-2	chr13	60896070	60897070	+	663.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_007797, intron 2 of 4)	intron (NM_007797, intron 2 of 4)	877.0	NM_007797	13025.0	Mm.30144	NM_007797	ENSMUSG00000074874	Ctla2b	AW545568|Ctla-2b	cytotoxic T lymphocyte-associated protein 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120405306-2	chr14	120404806	120405806	+	663.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 8 of 8)	intron (NM_001360376, intron 8 of 8)	-73155.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-126980531-2	chr10	126980031	126981031	+	663.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113470, intron 1 of 7)	intron (NM_001113470, intron 1 of 7)	1814.0	NM_001113470	52468.0	Mm.29490	NM_146012	ENSMUSG00000078429	Ctdsp2	AI586070|D10Ertd73e|OS-4|OS4|SCP2	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65971873-3	chr3	65971374	65972374	+	663.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19A|LTR|ERVK	-13625.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0.0	0.0	0.0	1.5	0.5	0.0
Merged-chr19-32832334-3	chr19	32831851	32832851	+	663.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74774.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	8.0	7.5	15.0	4.5	15.5	8.0
Merged-chr10-96624666-4	chr10	96624177	96625177	+	663.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7676.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-99007736-3	chr6	99007245	99008245	+	663.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 7 of 17)	intron (NM_001197321, intron 7 of 17)	20553.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr19-21764152-2	chr19	21763687	21764687	+	663.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14153.0	NM_001033759	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	1.5	0.0	0.0	1.5	0.0	0.0
Merged-chr2-69778866-3	chr2	69778369	69779369	+	663.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077684, intron 4 of 8)	intron (NM_001077684, intron 4 of 8)	10617.0	NM_001077684	75051.0	Mm.195726	NM_001077684	ENSMUSG00000070883	Ccdc173	4930525K21Rik|4930578N16Rik	coiled-coil domain containing 173	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125509707-1	chr5	125509207	125510207	+	663.666687	f1_c57bl6.idr	intron (NM_030210, intron 9 of 17)	PB1D10|SINE|Alu	-22711.0	NM_001190352	208151.0	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding	0.0	2.5	0.0	0.0	1.0	0.0
Merged-chr1-85294033-1	chr1	85293533	85294533	+	663.666687	f1_balb.idr	Intergenic	Lx5|LINE|L1	-23467.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117930094-3	chr10	117929570	117930570	+	663.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045342, intron 2 of 3)	MLT1L|LTR|ERVL-MaLR	4611.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119400304-2	chr13	119399804	119400804	+	663.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308506, intron 2 of 16)	intron (NM_001308506, intron 2 of 16)	8707.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-86103842-3	chr3	86103397	86104397	+	663.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082414, intron 4 of 14)	RLTR20A4|LTR|ERVK	19463.0	NM_001082414	27059.0	Mm.2454	NM_012059	ENSMUSG00000028082	Sh3d19	AW011754|Kryn	SH3 domain protein D19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21022004-2	chr11	21021504	21022504	+	663.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69320.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87444347-2	chr11	87443847	87444847	+	663.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	B1_Mm|SINE|Alu	16756.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-65585468-2	chr14	65584968	65585968	+	663.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028811, intron 3 of 14)	RLTR13C1|LTR|ERVK	7644.0	NM_001253812	74195.0	Mm.29719	NM_028811	ENSMUSG00000022031	Elp3	2610507P14Rik|KAT9	elongator acetyltransferase complex subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8778896-4	chr3	8778429	8779429	+	663.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111891.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66895852-2	chr9	66895363	66896363	+	663.5	f0_balb.idr|f0_c57.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	23842.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79918665-2	chr10	79918165	79919165	+	663.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_053244, exon 1 of 5)	5' UTR (NM_053244, exon 1 of 5)	1694.0	NM_053244	114229.0	Mm.191035	NM_053244	ENSMUSG00000035773	Kiss1r	Gpr54|KiSS-1|kiSS-1R	KISS1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180418097-2	chr1	180417597	180418597	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 4 of 7)	intron (NM_001081175, intron 4 of 7)	65407.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59726716-2	chr15	59726216	59727216	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68243.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59740777-2	chr15	59740277	59741277	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54182.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23895797-2	chr18	23895297	23896297	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-58891.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76625207-2	chr15	76624707	76625707	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025842, intron 1 of 9)	intron (NM_025842, intron 1 of 9)	877.0	NM_025842	66914.0	Mm.30028	NM_025842	ENSMUSG00000115987	Vps28	1110014J03Rik|CIIA|D730005C08Rik	vacuolar protein sorting 28	protein-coding	14.0	35.5	27.5	12.5	35.0	12.5
Merged-chr15-34587521-3	chr15	34587045	34588045	+	663.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145469, intron 6 of 10)	intron (NM_145469, intron 6 of 10)	-87528.0	NR_045883	71637.0	Mm.410827	NR_045883	ENSMUSG00000115526	4930413F20Rik	-	RIKEN cDNA 4930413F20 gene	ncRNA	0.0	0.0	0.0	13.0	1.5	0.5
Merged-chr16-32178020-2	chr16	32177520	32178520	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1780.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102432209-2	chr12	102431709	102432709	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	MER2|DNA|TcMar-Tigger	7604.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	11.0	46.5	27.5	11.5	36.5	21.0
Merged-chr1-159291095-2	chr1	159290609	159291609	+	663.5	f0_c57.idr|f1_balb.idr	intron (NM_011931, intron 11 of 19)	intron (NM_011931, intron 11 of 19)	-2664.0	NR_144489	100846986.0		NR_144489		Pou5f1-rs1	Gm21053|Oct4P2|Otf-3rs|Otf3-rs1|Otf3a	POU domain, class 5, transcription factor 1, related sequence 1	pseudo	16.0	11.5	7.0	4.5	5.0	11.0
Merged-chr10-120976972-2	chr10	120976472	120977472	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081193, intron 1 of 12)	intron (NM_001081193, intron 1 of 12)	2358.0	NM_001081193	380664.0	Mm.339371	NM_001081193	ENSMUSG00000048661	Lemd3	AI316861|Man1	LEM domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95033772-2	chr13	95033272	95034272	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172263, intron 16 of 19)	intron (NM_172263, intron 16 of 19)	57428.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155047308-2	chr1	155046808	155047808	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35956.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67090763-2	chr10	67090263	67091263	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 1 of 7)	B3|SINE|B2	6225.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72555407-2	chr5	72554907	72555907	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153351, intron 3 of 21)	intron (NR_153351, intron 3 of 21)	4238.0	NM_001359837	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45229676-2	chr2	45229176	45230176	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112234.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40757251-2	chr4	40756761	40757761	+	663.5	f0_balb.idr|f0_c57.idr	intron (NM_021535, intron 1 of 11)	intron (NM_021535, intron 1 of 11)	624.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95504923-2	chr3	95504423	95505423	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007802, intron 5 of 7)	intron (NM_007802, intron 5 of 7)	5713.0	NM_007802	13038.0	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-33303223-1	chr4	33302723	33303723	+	663.5	f0_balb.idr	Intergenic	RMER1B|Other|Other	-7088.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-35928984-2	chr3	35928484	35929484	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205361, intron 1 of 6)	intron (NM_001205361, intron 1 of 6)	1090.0	NM_033623	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87298652-2	chr17	87298152	87299152	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 3 of 19)	intron (NM_028639, intron 3 of 19)	15766.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-3388929-2	chr6	3388429	3389429	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010156, intron 1 of 1)	MTD|LTR|ERVL-MaLR	10642.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	9.5	16.5	13.5	0.5	0.5	3.5
Merged-chr17-53586096-2	chr17	53585596	53586596	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190846, intron 1 of 17)	intron (NM_001190846, intron 1 of 17)	1970.0	NM_001190846	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84143202-2	chr17	84142702	84143702	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44745.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35067406-2	chr7	35066906	35067906	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10840.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47707059-2	chr17	47706559	47707559	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5063.0	NR_045913	100126242.0	Mm.392746	NR_045912	ENSMUSG00000086930	Frs3os	4930417B13Rik|Gm14873	fibroblast growth factor receptor substrate 3, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr2-172473210-2	chr2	172472710	172473710	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029608, intron 1 of 1)	intron (NM_029608, intron 1 of 1)	656.0	NM_029608	76426.0	Mm.46148	NM_029608	ENSMUSG00000027505	Fam209	1700029J11Rik	family with sequence similarity 209	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-193896638-2	chr1	193896138	193897138	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	326121.0	NR_040477	74942.0	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-52630244-2	chr1	52629744	52630744	+	663.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142647)	promoter-TSS (NM_001142647)	-461.0	NR_024590	227094.0	Mm.83541	NM_172654	ENSMUSG00000043015	Nemp2	5330401P04Rik|9830163O08|Tmem194b	nuclear envelope integral membrane protein 2	protein-coding	6.0	2.5	1.0	0.0	0.0	2.5
Merged-chr1-95398495-2	chr1	95397995	95398995	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84867.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16909123-2	chr7	16908623	16909623	+	663.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008967, exon 2 of 2)	3' UTR (NM_008967, exon 2 of 2)	2633.0	NM_008967	19222.0	Mm.287572	NM_008967	ENSMUSG00000043017	Ptgir	IP|PGI2	prostaglandin I receptor (IP)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30439771-2	chr2	30439271	30440271	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138748, intron 8 of 9)	intron (NM_138748, intron 8 of 9)	23721.0	NM_138748	110854.0	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-124139212-2	chr3	124138712	124139712	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-181825.0	NM_146140	229801.0	Mm.165810	NM_146140	ENSMUSG00000044528	Tram1l1	A830091N21Rik	translocation associated membrane protein 1-like 1	protein-coding	0.0	0.0	4.0	0.0	0.0	0.0
Merged-chr19-43939405-2	chr19	43938905	43939905	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028029, intron 1 of 15)	intron (NM_028029, intron 1 of 15)	793.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	0.0	8.0	4.5	0.0	14.5	8.5
Merged-chr9-66508142-2	chr9	66507642	66508642	+	663.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175206)	TTS (NM_175206)	6451.0	NM_175206	74165.0	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34608549-2	chr19	34608049	34609049	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005858, intron 1 of 1)	(TG)n|Simple_repeat|Simple_repeat	592.0	NM_001005858	667370.0	Mm.271850	NM_001005858	ENSMUSG00000062488	Ifit3b	I830012O16Rik	interferon-induced protein with tetratricopeptide repeats 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52422746-2	chr2	52422246	52423246	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_182994, intron 1 of 5)	intron (NM_182994, intron 1 of 5)	2128.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116198337-1	chr11	116197837	116198837	+	663.5	f0_balb.idr	promoter-TSS (NM_027107)	promoter-TSS (NM_027107)	-518.0	NM_027107	69535.0	Mm.390347	NM_027107	ENSMUSG00000020778	Ten1	2310004N24Rik	TEN1 telomerase capping complex subunit	protein-coding	6.5	19.0	13.5	16.5	34.5	28.5
Merged-chr8-70373826-2	chr8	70373326	70374326	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016685, intron 1 of 18)	intron (NM_016685, intron 1 of 18)	278.0	NM_016685	12845.0	Mm.45071	NM_016685	ENSMUSG00000031849	Comp	TSP5	cartilage oligomeric matrix protein	protein-coding	4.5	4.0	0.0	5.5	2.0	1.0
Merged-chr1-88215690-2	chr1	88215190	88216190	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_201642, intron 2 of 4)	intron (NM_201642, intron 2 of 4)	3731.0	NM_201645	394436.0	Mm.300095	NM_201645	ENSMUSG00000089960	Ugt1a1	Gnt1|UDPGT 1-1|UGT1A01|Udpgt-1a|UgtBr1	UDP glucuronosyltransferase 1 family, polypeptide A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-148279216-1	chr3	148278716	148279716	+	663.5	f0_balb.idr	Intergenic	Intergenic	675419.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.5	0.0	0.0	3.5	4.0	0.0
Merged-chr4-9656871-2	chr4	9656371	9657371	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	12291.0	NM_023066	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	42.0	47.0	64.0	26.5	57.0	58.0
Merged-chr11-77424576-2	chr11	77424076	77425076	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 8 of 14)	intron (NM_177710, intron 8 of 14)	-39337.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-31804339-2	chr11	31803839	31804839	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_102312, intron 1 of 4)	intron (NR_102312, intron 1 of 4)	20208.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	2.0	13.0	22.0	24.0	4.0	21.5
Merged-chr11-4620767-2	chr11	4620267	4621267	+	663.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027798, exon 3 of 3)	non-coding (NR_027798, exon 3 of 3)	6999.0	NR_027798	327860.0	Mm.186065	NM_177799	ENSMUSG00000056288	Gm11961	-	predicted gene 11961	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-15444080-2	chr3	15443582	15444582	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17655.0	NM_001002898	320832.0	Mm.330924	NM_178792	ENSMUSG00000095788	Sirpb1a	9930027N05Rik|SIRP-beta|Sirpb|Sirpb1	signal-regulatory protein beta 1A	protein-coding	9.0	20.5	7.5	12.5	17.0	7.5
Merged-chr6-50559330-2	chr6	50558830	50559830	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7144.0	NM_007808	13063.0	Mm.35389	NM_007808	ENSMUSG00000063694	Cycs	-	cytochrome c, somatic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-73146577-2	chr5	73146077	73147077	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028194, intron 4 of 62)	intron (NM_028194, intron 4 of 62)	110041.0	NM_028194	72313.0	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131076893-2	chr2	131076393	131077393	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011426, intron 10 of 20)	intron (NM_011426, intron 10 of 20)	9872.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	11.0	10.0	6.5	12.0	19.0	25.0
Merged-chr1-134963052-2	chr1	134962552	134963552	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026024, intron 1 of 6)	B1F|SINE|Alu	487.0	NM_001278115	67196.0	Mm.284587	NM_026024	ENSMUSG00000026429	Ube2t	2700084L22Rik|C80607	ubiquitin-conjugating enzyme E2T	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61903103-2	chr9	61902603	61903603	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11407.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135325930-2	chr4	135325430	135326430	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016799, intron 14 of 17)	B2_Mm2|SINE|B2	27284.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96477329-2	chr9	96476829	96477829	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311135, intron 1 of 2)	intron (NM_001311135, intron 1 of 2)	1346.0	NM_011279	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0.5	1.5	0.0	5.5	2.0	1.0
Merged-chr4-59442599-2	chr4	59442099	59443099	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3966.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0.0	1.5	0.5	0.0	0.0	2.5
Merged-chr14-75837078-2	chr14	75836578	75837578	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	7886.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124539434-2	chr5	124538934	124539934	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1357.0	NM_019770	56334.0	Mm.325307	NM_019770	ENSMUSG00000029390	Tmed2	1110032D12Rik|1810020N21Rik|Rnp24|Sid394|p24beta1	transmembrane p24 trafficking protein 2	protein-coding	4.0	2.5	0.5	1.5	3.0	0.0
Merged-chr8-84391034-1	chr8	84390534	84391534	+	663.5	f0_balb.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-24330.0	NM_001252060	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	10.5	3.5	5.0	10.0	17.0	3.0
Merged-chr17-43166334-1	chr17	43165834	43166834	+	663.5	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-8043.0	NR_045153	545207.0	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	9.5	0.0	3.0	3.0	15.5	6.0
Merged-chr14-123696071-2	chr14	123695571	123696571	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145467, intron 2 of 10)	L1Md_A|LINE|L1	35931.0	NM_145467	223272.0	Mm.383176	NM_145467	ENSMUSG00000032925	Itgbl1	B930011D01Rik	integrin, beta-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31945641-2	chr16	31945141	31946141	+	663.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172822, exon 3 of 3)	exon (NM_172822, exon 3 of 3)	2880.0	NR_027897	106264.0	Mm.347369	NM_025320	ENSMUSG00000107002	0610012G03Rik	AI839730	RIKEN cDNA 0610012G03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36583502-2	chr5	36583002	36584002	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113362, intron 2 of 14)	intron (NM_001113362, intron 2 of 14)	-1105.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38511410-2	chr15	38510910	38511910	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001102458, intron 2 of 12)	B1_Mur1|SINE|Alu	7856.0	NM_001301688	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-104938706-2	chr5	104938176	104939176	+	663.5	f0_balb.idr|f1_balb.idr	intron (NM_030239, intron 14 of 15)	intron (NM_030239, intron 14 of 15)	44041.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	8.0	0.5	10.0	13.5	32.5	18.0
Merged-chr6-86474573-2	chr6	86474073	86475073	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_131126, intron 1 of 2)	RMER16B|LTR|ERVK	6257.0	NR_131125	320486.0	Mm.391625	NR_131125	ENSMUSG00000085589	A430078I02Rik	T25621	RIKEN cDNA A430078I02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60741609-2	chr13	60741109	60742109	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 19 of 26)	intron (NM_134062, intron 19 of 26)	44755.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0.0	8.0	1.0	0.0	2.5	0.5
Merged-chr15-89240213-2	chr15	89239713	89240713	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026813, intron 1 of 24)	intron (NM_026813, intron 1 of 24)	28654.0	NM_027805	71474.0	Mm.184055	NM_026813	ENSMUSG00000036561	Ppp6r2	1110033O10Rik|8430411H09Rik|B230107H12Rik|Pp6r2|Saps2	protein phosphatase 6, regulatory subunit 2	protein-coding	4.0	13.0	5.0	4.0	13.0	5.5
Merged-chr16-21688645-2	chr16	21688145	21689145	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001881, intron 1 of 1)	Lx8|LINE|L1	6020.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116085502-3	chr9	116085000	116086000	+	663.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89863.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	10.5	11.5	27.0	20.5	48.0	23.0
Merged-chr11-3267268-2	chr11	3266768	3267768	+	663.375	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007879)	promoter-TSS (NM_007879)	-805.0	NM_007879	13494.0	Mm.3250	NM_007879	ENSMUSG00000020457	Drg1	AA408859|AI132520|DRG-1|NEDD-3|Nedd3	developmentally regulated GTP binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23688088-2	chr13	23687588	23688588	+	663.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_023422, intron 1 of 1)	intron (NM_023422, intron 1 of 1)	3889.0	NM_023422	68024.0	Mm.261676	NM_023422	ENSMUSG00000018102	Hist1h2bc	2610022J01Rik|H2bfs|R74621	histone cluster 1, H2bc	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72222281-2	chr5	72221781	72222781	+	663.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 1 of 22)	intron (NR_003966, intron 1 of 22)	18938.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6054512-2	chr19	6054012	6055012	+	663.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028769)	TTS (NM_028769)	3178.0	NR_105954	102465597.0		NR_105954	ENSMUSG00000098928	Mir6988	Gm27593|mmu-mir-6988	microRNA 6988	ncRNA	2.5	9.5	2.0	1.5	10.5	3.5
Merged-chr11-116390871-3	chr11	116390372	116391372	+	663.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027258, intron 2 of 18)	IAPEz-int|LTR|ERVK	22160.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-97571207-3	chr1	97570702	97571702	+	663.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90474.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-80968698-3	chr13	80968213	80969213	+	663.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015587, intron 1 of 1)	RLTR16|LTR|ERVK	4639.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152413905-2	chr2	152413405	152414405	+	663.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_175126, exon 1 of 1)	exon (NM_175126, exon 1 of 1)	1139.0	NM_175126	67917.0	Mm.391810	NM_175126	ENSMUSG00000074682	Zcchc3	2810406K24Rik	zinc finger, CCHC domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119790046-3	chr13	119789557	119790557	+	663.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302550, intron 2 of 6)	intron (NM_001302550, intron 2 of 6)	401.0	NM_001302547	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43361641-2	chr1	43361141	43362141	+	663.299988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84110.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25144414-4	chr15	25143907	25144907	+	663.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	269357.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33961253-2	chr17	33960753	33961753	+	663.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357329, intron 11 of 19)	intron (NM_001357329, intron 11 of 19)	5163.0	NM_001357329	224705.0	Mm.448614	NM_172620	ENSMUSG00000024319	Vps52	ARE1|D130068D18|D430041K17Rik|SAC2|Sacm2l|tclw5	VPS52 GARP complex subunit	protein-coding	5.0	0.0	1.5	1.5	0.0	2.0
Merged-chr16-94328799-2	chr16	94328299	94329299	+	663.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_133229, intron 1 of 3)	intron (NM_133229, intron 1 of 3)	377.0	NM_133229	170765.0	Mm.42604	NM_133229	ENSMUSG00000022941	Ripply3	Dscr6	ripply transcriptional repressor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103682536-2	chr2	103682017	103683017	+	663.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 2 of 16)	intron (NM_178890, intron 2 of 16)	78753.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	0.0	3.0	1.0	0.5	4.0	3.5
Merged-chr5-5423265-2	chr5	5422765	5423765	+	663.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43014.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84381738-3	chr10	84381248	84382248	+	663.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 4 of 6)	MER44B|DNA|TcMar-Tigger	58723.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171681121-3	chr1	171680503	171681503	+	663.1777950000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360767)	promoter-TSS (NM_001360767)	-989.0	NM_007649	12506.0	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	4.5	5.0	7.5	8.0	10.5	5.5
Merged-chr10-87960883-2	chr10	87960383	87961383	+	663.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5788.0	NR_000040	22172.0	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88870055-2	chr15	88869555	88870555	+	663.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	7861.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98475638-2	chr15	98475138	98476138	+	663.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7045.0	NM_010679	16770.0	Mm.5074	NM_010679	ENSMUSG00000022991	Lalba	AW208827|Lyzg	lactalbumin, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34105692-2	chr17	34105192	34106192	+	663.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10383.0	NR_046183	414076.0	Mm.473092	NR_046183	ENSMUSG00000098197	BC051537	-	cDNA sequence BC051537	ncRNA	12.0	13.0	5.5	12.5	12.5	3.5
Merged-chr9-41129446-4	chr9	41128938	41129938	+	663.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	RSINE1|SINE|B4	28624.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	3.5	16.5	4.0	3.0	1.5	3.0
Merged-chr2-45019319-5	chr2	45018857	45019857	+	663.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 3 of 9)	intron (NM_001355291, intron 3 of 9)	3820.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107674810-2	chr9	107674310	107675310	+	663.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008140, exon 9 of 9)	3' UTR (NM_008140, exon 9 of 9)	4782.0	NM_008140	14685.0	Mm.284853	NM_008140	ENSMUSG00000034837	Gnat1	Gnat-1|Ird1|Ird2|Tralpha|irdc|irdr|transducin	guanine nucleotide binding protein, alpha transducing 1	protein-coding	0.0	0.0	0.0	1.0	0.0	8.0
Merged-chr2-156515891-2	chr2	156515392	156516392	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291122, intron 14 of 20)	intron (NM_001291122, intron 14 of 20)	-31684.0	NM_026661	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	2.5	1.0	0.0	20.0	5.0	2.0
Merged-chr15-83032774-1	chr15	83032274	83033274	+	663.0	f1_balb.idr	intron (NM_001271411, intron 1 of 5)	intron (NM_001271411, intron 1 of 5)	623.0	NM_001271412	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	7.0	31.5	34.5	13.5	23.0	27.5
Merged-chr11-46276915-2	chr11	46276415	46277415	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252459, intron 7 of 30)	intron (NM_001252459, intron 7 of 30)	35443.0	NM_001252460	76884.0	Mm.154358	NM_133769	ENSMUSG00000020340	Cyfip2	1500004I01Rik|6430511D02Rik|AA930218|AU022376|Pir121|mKIAA1168	cytoplasmic FMR1 interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90446999-3	chr3	90446501	90447501	+	663.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13365.0	NM_178876	229543.0	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	9.5	21.5	8.0	16.0	27.0	8.5
Merged-chr15-95276780-2	chr15	95276280	95277280	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356950, intron 16 of 20)	intron (NM_001356950, intron 16 of 20)	-127462.0	NR_015482	100043315.0	Mm.159041	NR_015482	ENSMUSG00000100603	LOC100043315	-	uncharacterized LOC100043315	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-92100753-2	chr6	92100253	92101253	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347342, intron 1 of 14)	intron (NM_001347342, intron 1 of 14)	8320.0	NM_001347342	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	2.5	6.0	9.0	2.0	8.0	9.5
Merged-chr10-34190688-1	chr10	34190188	34191188	+	663.0	f0_balb.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	16863.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	12.5	47.5	9.5	12.5	53.0	9.5
Merged-chr15-89404739-3	chr15	89404248	89405248	+	663.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162880, intron 1 of 2)	intron (NM_001162880, intron 1 of 2)	5515.0	NM_001162882	75459.0	Mm.45462	NM_001162880	ENSMUSG00000078938	Syce3	1700007E06Rik|TSEG-2|TSEG2	synaptonemal complex central element protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-65809008-1	chr1	65808508	65809508	+	663.0	f1_balb.idr	Intergenic	RMER17B|LTR|ERVK	-117514.0	NM_001360779	12969.0	Mm.275362	NM_027010	ENSMUSG00000025945	Crygf	3110001K11Rik|Cryg-2|DGcry-2|Len-2	crystallin, gamma F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-83056059-2	chr3	83055559	83056559	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016784, intron 1 of 14)	L2|LINE|L2	521.0	NM_016784	53317.0	Mm.286349	NM_016784	ENSMUSG00000027998	Plrg1	AA958940|C80566|Tango4	pleiotropic regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88357899-2	chr1	88357399	88358399	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134252, intron 18 of 26)	intron (NM_134252, intron 18 of 26)	-49111.0	NM_029269	75396.0	Mm.173058	NM_029269	ENSMUSG00000026295	Spp2	0610038O04Rik|pp-24|spp24	secreted phosphoprotein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8919470-1	chr19	8918970	8919970	+	663.0	f1_c57bl6.idr	promoter-TSS (NM_024256)	promoter-TSS (NM_024256)	-923.0	NM_024256	72727.0	Mm.259	NM_024256	ENSMUSG00000071649	B3gat3	2810405M13Rik	beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)	protein-coding	1.0	4.0	8.0	1.0	1.0	4.5
Merged-chr2-84235697-1	chr2	84235197	84236197	+	663.0	f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	189569.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0.0	2.0	5.0	0.0	6.0	2.0
Merged-chr5-147188628-1	chr5	147188128	147189128	+	663.0	f1_c57bl6.idr	promoter-TSS (NM_008178)	promoter-TSS (NM_008178)	-68.0	NM_008178	14842.0	Mm.4797	NM_008178	ENSMUSG00000053129	Gsx1	Gsh-1|Gsh1	GS homeobox 1	protein-coding	0.0	5.0	0.0	1.0	0.0	1.0
Merged-chr8-95600033-2	chr8	95599533	95600533	+	663.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24426.0	NM_001310539	70993.0	Mm.486561	NM_027640	ENSMUSG00000048400	Prss54	4931432M23Rik|Klkbl4	protease, serine 54	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117889204-2	chr5	117888673	117889673	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 2 of 27)	B4A|SINE|B4	22334.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	4.5	2.5	2.5	0.0	1.0	1.5
Merged-chr10-59748989-1	chr10	59748489	59749489	+	663.0	f0_balb.idr	intron (NM_001359267, intron 4 of 11)	L1MEf|LINE|L1	46426.0	NM_001291443	216001.0	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101072041-2	chr11	101071541	101072541	+	663.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013792, exon 3 of 6)	exon (NM_013792, exon 3 of 6)	1947.0	NM_013792	27419.0	Mm.95452	NM_013792	ENSMUSG00000001751	Naglu	-	alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118575117-1	chr14	118574617	118575617	+	663.0	f1_balb.idr	intron (NM_001163676, intron 18 of 29)	intron (NM_001163676, intron 18 of 29)	17355.0	NR_105815	102465208.0		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	0.0	0.0	0.0	2.0	1.0	0.0
Merged-chr17-79894420-2	chr17	79893920	79894920	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357752, intron 1 of 13)	intron (NM_001357752, intron 1 of 13)	1703.0	NM_178050	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124661765-2	chr6	124661265	124662265	+	663.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1339.0	NR_149320	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31045773-1	chr5	31045273	31046273	+	663.0	f1_balb.idr	intron (NM_001360022, intron 2 of 17)	B1_Mus2|SINE|Alu	2306.0	NM_177870	330064.0	Mm.205463	NM_177870	ENSMUSG00000006641	Slc5a6	E430023I20	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	protein-coding	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr1-85326997-1	chr1	85326497	85327497	+	663.0	f1_balb.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-56431.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17740701-1	chr12	17740201	17741201	+	663.0	f1_balb.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	49892.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	5.0	4.5	15.5	30.0	6.0	2.0
Merged-chr11-67564862-1	chr11	67564362	67565362	+	663.0	f0_c57.idr	intron (NM_008088, intron 1 of 13)	MLT1D|LTR|ERVL-MaLR	-21638.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	1.5	21.5	5.0	3.5	11.5	3.5
Merged-chr4-47050410-4	chr4	47049888	47050888	+	663.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024136, intron 1 of 14)	intron (NM_001024136, intron 1 of 14)	6918.0	NR_151464	75691.0	Mm.86866	NM_001024136	ENSMUSG00000066191	Anks6	2210417J20Rik|Ankrd14|Gm635|SamCystin|Samd6|b2b1801.1Clo	ankyrin repeat and sterile alpha motif domain containing 6	protein-coding	0.0	0.0	3.5	0.0	0.0	0.0
Merged-chr10-119149609-1	chr10	119149109	119150109	+	663.0	f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	56704.0	NR_045348	73400.0	Mm.416864	NR_045348	ENSMUSG00000100681	1700064J06Rik	-	RIKEN cDNA 1700064J06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-138096269-1	chr3	138095769	138096769	+	663.0	f1_c57bl6.idr	intron (NM_001355052, intron 19 of 21)	B1_Mus2|SINE|Alu	-28881.0	NR_037975	329763.0	Mm.169710	NM_177860	ENSMUSG00000049349	Gm5105	D830013H12|EG329763	predicted gene 5105	ncRNA	1.5	0.0	0.5	0.0	0.0	2.5
Merged-chr11-11765499-3	chr11	11764908	11765908	+	663.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025597, intron 7 of 7)	intron (NM_001025597, intron 7 of 7)	43554.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	1.5	1.0	8.5	1.5	1.0	6.5
Merged-chr10-127551788-2	chr10	127551288	127552288	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 62 of 88)	intron (NM_008512, intron 62 of 88)	-17229.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.0	6.0	2.0	0.0	1.5	0.0
Merged-chr9-40812116-3	chr9	40811648	40812648	+	663.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	10875.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	6.5	11.5	2.0	1.5	4.5	6.0
Merged-chr14-18923798-2	chr14	18923298	18924298	+	663.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-29531.0	NM_001360327	218793.0	Mm.23551	NM_144839	ENSMUSG00000058317	Ube2e2	BC016265	ubiquitin-conjugating enzyme E2E 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-74956325-2	chr14	74955825	74956825	+	663.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8448.0	NM_001033439	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97532623-2	chr11	97532107	97533107	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 11 of 19)	intron (NM_018873, intron 11 of 19)	-32267.0	NM_001289118	100141474.0	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr6-12571389-2	chr6	12570889	12571889	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164805, intron 1 of 26)	intron (NM_001164805, intron 1 of 26)	177864.0	NM_001164805	330267.0	Mm.11989	NM_001164805	ENSMUSG00000032625	Thsd7a	Gm837	thrombospondin, type I, domain containing 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70280872-1	chr8	70280372	70281372	+	663.0	f1_balb.idr	Intergenic	B1_Mur1|SINE|Alu	-2127.0	NM_011984	26558.0	Mm.388127	NM_011984	ENSMUSG00000003573	Homer3	AW146114	homer scaffolding protein 3	protein-coding	6.0	8.5	6.5	5.0	7.0	1.0
Merged-chr6-128765425-2	chr6	128764925	128765925	+	663.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	23216.0	NM_001159904	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	0.0	0.0	0.0	1.0	1.0	5.0
Merged-chr1-53777947-2	chr1	53777454	53778454	+	663.0	f0_balb.idr|f1_balb.idr	intron (NM_133810, intron 1 of 7)	ORR1F|LTR|ERVL-MaLR	7261.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	51.0	123.0	123.0	30.0	117.0	73.0
Merged-chr10-127141818-2	chr10	127141318	127142318	+	663.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20658.0	NM_001171026	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-86064652-2	chr5	86064177	86065177	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001345903, intron 1 of 19)	intron (NM_001345903, intron 1 of 19)	906.0	NM_001345902	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	3.0	3.0	3.5	3.5	9.0	9.0
Merged-chr16-89913967-2	chr16	89913467	89914467	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 2 of 27)	intron (NM_009384, intron 2 of 27)	46860.0	NM_009384	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118690487-2	chr14	118689987	118690987	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163676, intron 1 of 29)	intron (NM_001163676, intron 1 of 29)	-13556.0	NM_001163675	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-111954947-1	chr11	111954447	111955447	+	663.0	f0_balb.idr	Intergenic	Intergenic	756409.0	NR_024085	217294.0	Mm.297761	NM_146031	ENSMUSG00000041674	BC006965	-	cDNA sequence BC006965	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10699962-2	chr19	10699462	10700462	+	663.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361964)	promoter-TSS (NM_001361964)	-806.0	NM_001361964	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83663070-1	chr8	83662570	83663570	+	663.0	f1_c57bl6.idr	exon (NM_018771, exon 5 of 7)	exon (NM_018771, exon 5 of 7)	-3574.0	NM_013641	19216.0	Mm.213000	NM_013641	ENSMUSG00000019464	Ptger1	EP1|Ptgerep1	prostaglandin E receptor 1 (subtype EP1)	protein-coding	3.0	12.5	1.5	8.0	0.0	2.0
Merged-chr15-98864357-2	chr15	98863857	98864857	+	663.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033276, exon 10 of 55)	exon (NM_001033276, exon 10 of 55)	6848.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62235814-2	chr9	62235314	62236314	+	663.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8286.0	NR_040769	330958.0	Mm.411888	NR_040769	ENSMUSG00000111232	A730043L09Rik	A730043L09	RIKEN cDNA A730043L09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135570083-2	chr5	135569583	135570583	+	663.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019577, exon 3 of 3)	3' UTR (NM_019577, exon 3 of 3)	2966.0	NM_019577	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	9.0	11.0	9.0	9.0	20.0	16.5
Merged-chr12-34837431-2	chr12	34836931	34837931	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 2 of 27)	intron (NM_001271386, intron 2 of 27)	79664.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	6.5	12.0	0.5	11.0	11.0	2.0
Merged-chr13-87983968-2	chr13	87983468	87984468	+	663.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-837504.0	NM_010103	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25548067-2	chr2	25547567	25548567	+	663.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1127.0	NM_009422	22030.0	Mm.3399	NM_009422	ENSMUSG00000026942	Traf2	AI325259	TNF receptor-associated factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-73792695-2	chr18	73792195	73793195	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145494, intron 7 of 15)	intron (NM_145494, intron 7 of 15)	22697.0	NM_145494	107029.0	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	5.0	0.0	0.0	0.0	3.0	0.0
Merged-chr8-71469724-1	chr8	71469224	71470224	+	663.0	f0_balb.idr	intron (NM_001294259, intron 1 of 3)	intron (NM_001294259, intron 1 of 3)	530.0	NR_122114	66498.0	Mm.260360	NM_025600	ENSMUSG00000074247	Dda1	1500034J01Rik|1700095J19Rik|R74921	DET1 and DDB1 associated 1	protein-coding	0.5	7.0	8.5	8.0	25.0	13.5
Merged-chr4-135939532-1	chr4	135939032	135940032	+	663.0	f1_balb.idr	3' UTR (NM_024243, exon 8 of 8)	3' UTR (NM_024243, exon 8 of 8)	-6916.0	NM_008254	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	0.0	0.0	6.0	5.5	0.0	2.0
Merged-chr5-124471645-2	chr5	124471145	124472145	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030259, intron 1 of 3)	B1_Mm|SINE|Alu	6590.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-129338472-2	chr3	129337972	129338972	+	663.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5723.0	NM_007934	13809.0	Mm.1193	NM_007934	ENSMUSG00000028024	Enpep	6030431M22Rik|APA|Bp-1/6C3|Ly-51|Ly51	glutamyl aminopeptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108762938-2	chr12	108762438	108763438	+	663.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30373.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62470504-2	chr9	62470004	62471004	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175484, intron 2 of 11)	intron (NM_175484, intron 2 of 11)	66540.0	NM_175484	235431.0	Mm.335229	NM_175484	ENSMUSG00000041729	Coro2b	CLIPINC|E130012P22Rik	coronin, actin binding protein, 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77289414-2	chr10	77288914	77289914	+	663.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID|SINE|ID	30114.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100566537-1	chr5	100566037	100567037	+	663.0	f1_balb.idr	intron (NM_139198, intron 1 of 4)	ID_B1|SINE|B4	5668.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	3.5	0.0	1.0	0.0	2.5	2.0
Merged-chr2-78419094-1	chr2	78418594	78419594	+	663.0	f0_balb.idr	Intergenic	Intergenic	181547.0	NM_177843	329436.0	Mm.235448	NM_177843		Gm14461	A830093M07	predicted gene 14461	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-48954171-2	chr7	48953671	48954671	+	663.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4902.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70012469-1	chr8	70011969	70012969	+	663.0	f1_balb.idr	Intergenic	Intergenic	-16085.0	NM_145596	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	3.5	7.5	9.0	3.0	13.0	5.5
Merged-chr18-53464436-1	chr18	53463936	53464936	+	663.0	f1_balb.idr	promoter-TSS (NM_001033281)	promoter-TSS (NM_001033281)	-110.0	NM_001033281	225518.0	Mm.297645	NM_001033281	ENSMUSG00000069378	Prdm6	Gm92|PRISM	PR domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-6571179-2	chr13	6570679	6571679	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360106, intron 20 of 26)	MTC|LTR|ERVL-MaLR	23022.0	NM_001360106	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-38020736-1	chr11	38020236	38021236	+	663.0	f1_balb.idr	Intergenic	Lx2B2|LINE|L1	361747.0	NR_131154	100039148.0	Mm.120467	NR_131154	ENSMUSG00000087388	Gm12128	-	predicted gene 12128	ncRNA	3.5	0.0	0.5	3.0	0.0	1.5
Merged-chr8-117074159-2	chr8	117073659	117074659	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 4 of 42)	intron (NM_029686, intron 4 of 42)	8290.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113768650-2	chr5	113768150	113769150	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151532, intron 1 of 16)	RSINE1|SINE|B4	3750.0	NR_151532	53890.0	Mm.29594	NM_016926	ENSMUSG00000018974	Sart3	AU045857|mKIAA0156	squamous cell carcinoma antigen recognized by T cells 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17558132-1	chr6	17557632	17558632	+	663.0	f0_balb.idr	intron (NM_008591, intron 17 of 21)	intron (NM_008591, intron 17 of 21)	-78878.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	2.5	1.0	0.0	1.0	5.5	10.5
Merged-chr15-53558596-3	chr15	53558091	53559091	+	662.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	55688.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158131360-2	chr2	158130851	158131851	+	662.875	f1_balb.idr|f1_c57bl6.idr	exon (NM_009373, exon 6 of 13)	exon (NM_009373, exon 6 of 13)	15041.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-97009986-2	chr5	97009486	97010486	+	662.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 1 of 15)	ORR1E|LTR|ERVL-MaLR	12297.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66879035-2	chr9	66878535	66879535	+	662.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	40670.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102295489-4	chr11	102295028	102296028	+	662.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098836, intron 1 of 12)	intron (NM_001098836, intron 1 of 12)	1101.0	NM_001098836	217218.0	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	8.5	40.0	17.0	25.5	22.0	21.0
Merged-chr7-67237914-2	chr7	67237414	67238414	+	662.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 10 of 11)	intron (NM_001357324, intron 10 of 11)	15298.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-125476445-3	chr1	125475980	125476980	+	662.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40753.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-76254826-3	chr18	76254216	76255216	+	662.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010754, intron 1 of 10)	intron (NM_010754, intron 1 of 10)	-6405.0	NM_001252481	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	13.0	3.0	3.5	4.0	4.0	5.0
Merged-chr18-57400937-3	chr18	57400422	57401422	+	662.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4493.0	NR_152223	100503007.0	Mm.238087	NR_152223		Gm19500	-	predicted gene, 19500	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-114584006-3	chr9	114583517	114584517	+	662.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19648.0	NM_001042503	636931.0	Mm.17857	NM_001042503	ENSMUSG00000079259	Trim71	2610206G21Rik|AL022943|Gm1127|Lin41|lin-41|mLin41|mlin-41	tripartite motif-containing 71	protein-coding	3.0	3.0	1.0	0.0	0.0	4.0
Merged-chr1-144406781-4	chr1	144406295	144407295	+	662.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157691.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-118595115-3	chr5	118594616	118595616	+	662.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	34397.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43229159-2	chr5	43228659	43229659	+	662.833313	f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 1 of 7)	MT2A|LTR|ERVL	-4304.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152491355-5	chr4	152490917	152491917	+	662.799988	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355739, intron 3 of 29)	intron (NM_001355739, intron 3 of 29)	13275.0	NM_153424	260305.0	Mm.302496	NM_153424	ENSMUSG00000039577	Nphp4	4930564O18Rik|nmf192	nephronophthisis 4 (juvenile) homolog (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84783463-3	chr2	84782953	84783953	+	662.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-8024.0	NM_009776	12258.0	Mm.38888	NM_009776	ENSMUSG00000023224	Serping1	C1INH|C1nh	serine (or cysteine) peptidase inhibitor, clade G, member 1	protein-coding	1.5	11.0	0.5	0.0	10.5	0.5
Merged-chr9-72408451-3	chr9	72407940	72408940	+	662.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_152222)	TTS (NR_152222)	1427.0	NR_152222	100502819.0	Mm.392319	NR_152222	ENSMUSG00000097211	BC065403	A930005F02Rik	cDNA sequence BC065403	ncRNA	9.0	4.0	0.0	4.5	4.0	0.0
Merged-chr6-92989242-2	chr6	92988822	92989822	+	662.75	f0_balb.idr|f1_balb.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	48740.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	0.0	0.5	0.0	10.5	7.0	18.0
Merged-chr6-124731675-2	chr6	124731175	124732175	+	662.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077705, intron 3 of 15)	intron (NM_001077705, intron 3 of 15)	1479.0	NM_013545	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24793078-2	chr13	24792578	24793578	+	662.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-8579.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31080817-2	chr2	31080317	31081317	+	662.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	15683.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81621043-2	chr10	81620543	81621543	+	662.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_181586)	TTS (NM_181586)	6279.0	NM_001163430	50721.0	Mm.25643	NM_181586	ENSMUSG00000034748	Sirt6	2810449N18Rik|AI043036|Sir2l6	sirtuin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107471532-3	chr11	107471083	107472083	+	662.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145823)	promoter-TSS (NM_145823)	-863.0	NM_145823	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-12261410-2	chr12	12260910	12261910	+	662.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029758)	promoter-TSS (NM_029758)	-729.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0.0	15.5	14.5	8.5	2.0	3.5
Merged-chr17-56281173-2	chr17	56280673	56281673	+	662.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_025836, intron 6 of 7)	intron (NM_025836, intron 6 of 7)	-4406.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55430142-2	chr13	55429643	55430643	+	662.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-3339.0	NM_021489	58992.0	Mm.42224	NM_021489	ENSMUSG00000021492	F12	FXII|HAF	coagulation factor XII (Hageman factor)	protein-coding	36.5	71.0	20.5	28.0	52.0	60.5
Merged-chr18-12796142-4	chr18	12795638	12796638	+	662.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252490, intron 3 of 13)	Lx7|LINE|L1	23769.0	NR_045524	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16658906-3	chr1	16658429	16659429	+	662.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037998, exon 1 of 4)	non-coding (NR_037998, exon 1 of 4)	1377.0	NR_037998	329101.0	Mm.406049	NR_037998	ENSMUSG00000097744	D030040B21Rik	D030040B21	RIKEN cDNA D030040B21 gene	ncRNA	27.0	30.0	30.0	25.0	25.0	31.0
Merged-chr5-33021914-2	chr5	33021414	33022414	+	662.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_011738, intron 1 of 1)	ID4|SINE|ID	3098.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104243746-2	chr8	104243246	104244246	+	662.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_045642, intron 2 of 8)	ID4|SINE|ID	4812.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142279410-2	chr3	142278910	142279910	+	662.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190854, intron 7 of 12)	intron (NM_001190854, intron 7 of 12)	-109985.0	NM_001277216	12167.0	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	0.0	2.0	4.5	0.0	2.0	4.5
Merged-chr2-32139433-2	chr2	32138933	32139933	+	662.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11715.0	NM_172661	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89639294-4	chr6	89638803	89639803	+	662.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4685.0	NM_001178060	232223.0	Mm.229332	NM_153162	ENSMUSG00000000811	Txnrd3	AI196535|TGR|TR2	thioredoxin reductase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4105843-2	chr8	4105334	4106334	+	662.583374	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_026956)	promoter-TSS (NM_026956)	-70.0	NM_026956	69142.0	Mm.171061	NM_026956	ENSMUSG00000051906	Cd209f	1810029C22Rik|AI647041|SIGNR8	CD209f antigen	protein-coding	2.0	0.0	6.0	3.0	14.5	15.5
Merged-chr11-75535230-4	chr11	75534786	75535786	+	662.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 2 of 13)	intron (NM_001199284, intron 2 of 13)	3174.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17385433-2	chr10	17384933	17385933	+	662.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-289651.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-142073548-2	chr4	142073048	142074048	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	L1MD3|LINE|L1	-10750.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34804537-2	chr2	34804037	34805037	+	662.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013890, exon 8 of 8)	3' UTR (NM_013890, exon 8 of 8)	-4625.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-9427739-2	chr17	9427239	9428239	+	662.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	241965.0	NM_001163836	67543.0	Mm.26987	NM_026226	ENSMUSG00000046173	Pabpc6	4932702K14Rik|AI428050|Pabpc3	poly(A) binding protein, cytoplasmic 6	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr10-77623844-2	chr10	77623344	77624344	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019803, intron 1 of 5)	B3|SINE|B2	1523.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11424825-2	chr16	11424325	11425325	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 11 of 20)	intron (NM_028964, intron 11 of 20)	19177.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-27715479-2	chr13	27714979	27715979	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011120, intron 1 of 5)	Lx3_Mus|LINE|L1	1257.0	NM_001360090	18814.0	Mm.3258	NM_011120	ENSMUSG00000021348	Prl7d1	Ghd19|PLF-RP|PRP|Plfr	prolactin family 7, subfamily d, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119828934-2	chr8	119828434	119829434	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	11645.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76902811-2	chr15	76902311	76903311	+	662.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1260.0	NM_012053	26961.0	Mm.30066	NM_012053	ENSMUSG00000003970	Rpl8	-	ribosomal protein L8	protein-coding	0.5	0.0	0.5	0.5	0.0	0.5
Merged-chr2-162494012-2	chr2	162493512	162494512	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291150, intron 1 of 30)	intron (NM_001291150, intron 1 of 30)	103199.0	NR_040617	77645.0	Mm.447752	NR_040617	ENSMUSG00000084919	Ptprtos	C330008G21Rik	protein tyrosine phosphatase, receptor type T, opposite strand	ncRNA	4.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163100192-2	chr2	163099692	163100692	+	662.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10591.0	NM_026630	68236.0	Mm.33648	NM_026630	ENSMUSG00000070708	Gtsf1l	2410116G06Rik	gametocyte specific factor 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55739259-3	chr1	55738725	55739725	+	662.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 5 of 5)	intron (NM_001114663, intron 5 of 5)	-192016.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	3.0	3.0	0.0	2.0	1.5	2.5
Merged-chr19-55286238-4	chr19	55285737	55286737	+	662.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027976, intron 12 of 21)	intron (NM_027976, intron 12 of 21)	29799.0	NM_001360595	66980.0	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6	zinc finger, DHHC domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166909127-2	chr2	166908627	166909627	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023565, intron 1 of 24)	B2_Mm2|SINE|B2	3031.0	NM_023565	110750.0	Mm.22417	NM_023565	ENSMUSG00000002718	Cse1l	2610100P18Rik|AA407533|Capts|Cas|Xpo2	chromosome segregation 1-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122508605-2	chr3	122508105	122509105	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013867, intron 5 of 11)	intron (NM_013867, intron 5 of 11)	25036.0	NM_001355264	29815.0	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103907983-2	chr14	103907483	103908483	+	662.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63507.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6076583-2	chr19	6076083	6077083	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081041, intron 1 of 9)	intron (NM_001081041, intron 1 of 9)	604.0	NM_001081041	68505.0	Mm.227361	NM_001081041	ENSMUSG00000024799	Vps51	1110014N23Rik|3110057M17Rik|AI837850|Ffr	VPS51 GARP complex subunit	protein-coding	3.0	1.0	7.0	4.5	3.0	1.0
Merged-chr4-63585545-2	chr4	63585045	63586045	+	662.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001356354, exon 10 of 10)	3' UTR (NM_001356354, exon 10 of 10)	15219.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126764732-2	chr8	126764232	126765232	+	662.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84288.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-33311330-2	chr6	33310830	33311830	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347089, intron 5 of 9)	intron (NM_001347089, intron 5 of 9)	62202.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150491101-2	chr4	150490601	150491601	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 7 of 22)	intron (NM_001085492, intron 7 of 22)	161073.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-86920527-1	chr8	86920027	86921027	+	662.5	f0_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-35269.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119792301-2	chr13	119791801	119792801	+	662.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1179.0	NM_001302550	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-91209286-3	chr10	91208825	91209825	+	662.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151510, intron 3 of 3)	intron (NR_151510, intron 3 of 3)	11294.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63058272-2	chr9	63057772	63058772	+	662.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77393.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120232097-2	chr11	120231597	120232597	+	662.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347621)	promoter-TSS (NM_001347621)	-480.0	NR_151480	102640779.0	Mm.394084	NM_175248		2900052L18Rik	-	RIKEN cDNA 2900052L18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29168449-2	chr7	29167949	29168949	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_182927, intron 1 of 5)	intron (NM_182927, intron 1 of 5)	198.0	NM_182927	101809.0	Mm.377262	NM_182927	ENSMUSG00000037239	Spred3	AW047143|D130060H24Rik|Spred-3	sprouty-related, EVH1 domain containing 3	protein-coding	2.0	7.5	1.0	2.0	8.0	1.0
Merged-chr12-87403390-2	chr12	87402890	87403890	+	662.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-15035.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87322780-2	chr3	87322269	87323269	+	662.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	RLTR12B|LTR|ERVK	-35112.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	5.0	33.0	11.0	2.0	3.5	6.5
Merged-chr2-38465250-2	chr2	38464750	38465750	+	662.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A1|DNA|hAT-Charlie	-46447.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150010387-2	chr4	150009888	150010888	+	662.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1365.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	12.5	10.5	6.5	10.5	6.0	10.0
Merged-chr11-100715211-2	chr11	100714711	100715711	+	662.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029307)	TTS (NM_029307)	1361.0	NM_029307	75482.0	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	3.5	8.5	2.5	6.0	4.0	4.5
Merged-chr2-92435152-2	chr2	92434652	92435652	+	662.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1083.0	NM_009963	12953.0	Mm.254181	NM_009963	ENSMUSG00000068742	Cry2	AV006279|D130054K12Rik	cryptochrome 2 (photolyase-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-67481388-2	chr8	67480888	67481888	+	662.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-9370.0	NM_008673	17960.0	Mm.14125	NM_008673	ENSMUSG00000025588	Nat1	Nat-1	N-acetyl transferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-126597537-2	chr2	126597037	126598037	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008230, intron 10 of 11)	intron (NM_008230, intron 10 of 11)	21141.0	NM_008230	15186.0	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7529224-2	chr19	7528724	7529724	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163505, intron 9 of 12)	intron (NM_001163505, intron 9 of 12)	-28235.0	NM_139269	225845.0	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	AdPLA|C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-12793513-2	chr8	12793013	12794013	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015804, intron 1 of 28)	intron (NM_015804, intron 1 of 28)	36497.0	NM_001293667	50770.0	Mm.257837	NM_015804	ENSMUSG00000031441	Atp11a	4930558F19Rik|AU040868|Atpc1h|Ih	ATPase, class VI, type 11A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27604994-2	chr3	27604494	27605494	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 4 of 26)	intron (NM_001356953, intron 4 of 26)	-19999.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-86706926-2	chr10	86706426	86707426	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003910, intron 1 of 15)	intron (NM_001003910, intron 1 of 15)	1115.0	NM_001003939	103220.0	Mm.440762	NM_153595	ENSMUSG00000044937	Ttc41	AI449705|AU041509|Gnn	tetratricopeptide repeat domain 41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97659619-2	chr3	97659119	97660119	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_182997, intron 2 of 7)	intron (NM_182997, intron 2 of 7)	1407.0	NM_182997	108097.0	Mm.31175	NM_182997	ENSMUSG00000038205	Prkab2	5730553K21Rik|AW049591|BB124140	protein kinase, AMP-activated, beta 2 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89903295-2	chr3	89902795	89903795	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	9901.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61666113-2	chr8	61665613	61666613	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	-74944.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24718051-2	chr17	24717551	24718551	+	662.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026205)	promoter-TSS (NM_026205)	6.0	NM_026205	67504.0	Mm.46159	NM_026205	ENSMUSG00000008482	Rnf151	1700010O16Rik|AV047371	ring finger protein 151	protein-coding	0.0	0.0	2.0	0.0	8.0	1.5
Merged-chr3-95904731-2	chr3	95904231	95905231	+	662.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011797)	promoter-TSS (NM_011797)	-46.0	NM_001355750	23831.0	Mm.489647	NM_011797	ENSMUSG00000038526	Car14	AW536446|CA-XIV|Ca14	carbonic anhydrase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-8171429-2	chr14	8170929	8171929	+	662.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_024221, exon 3 of 10)	exon (NM_024221, exon 3 of 10)	1563.0	NM_024221	68263.0	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119976107-2	chr4	119975607	119976607	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	161429.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	2.0	0.0	1.5	0.0	1.5	2.0
Merged-chr18-58511104-2	chr18	58510604	58511604	+	662.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMAR1|DNA|TcMar-Mariner	-45136.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137469071-2	chr4	137468571	137469571	+	662.5	f0_balb.idr|f0_c57.idr	intron (NM_008305, intron 1 of 96)	CpG	268.0	NM_008305	15530.0	Mm.273662	NM_008305	ENSMUSG00000028763	Hspg2	AI852380|Pcn|Plc|per	perlecan (heparan sulfate proteoglycan 2)	protein-coding	4.5	3.5	0.0	9.0	3.5	0.0
Merged-chr8-13575366-2	chr8	13574866	13575866	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 22 of 23)	intron (NM_009025, intron 22 of 23)	-12905.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80788968-2	chr10	80788468	80789468	+	662.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_199322, exon 24 of 28)	exon (NM_199322, exon 24 of 28)	9658.0	NM_023900	78670.0	Mm.41479	NM_023900	ENSMUSG00000035278	Plekhj1	9530063M10Rik	pleckstrin homology domain containing, family J member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5340783-2	chr18	5340283	5341283	+	662.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-5976.0	NM_001360447	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45038335-1	chr7	45037835	45038835	+	662.5	f1_c57bl6.idr	intron (NM_175022, intron 6 of 13)	intron (NM_175022, intron 6 of 13)	14546.0	NM_175022	233210.0	Mm.219137	NM_175022	ENSMUSG00000046574	Prr12	6720469B10|BC058674	proline rich 12	protein-coding	0.0	0.0	1.5	1.0	7.0	0.0
Merged-chr16-13820794-2	chr16	13820294	13821294	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346109, intron 1 of 7)	B4A|SINE|B4	1543.0	NM_001346111	18203.0	Mm.380410	NM_010946	ENSMUSG00000022681	Ntan1	PNAA|PNAD	N-terminal Asn amidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114834626-2	chr6	114834126	114835126	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 19 of 19)	MIRb|SINE|MIR	87195.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-83182745-2	chr10	83182245	83183245	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021439, intron 2 of 2)	intron (NM_021439, intron 2 of 2)	155072.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122112505-4	chr14	122111976	122112976	+	662.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080556, intron 1 of 16)	intron (NM_080556, intron 1 of 16)	5394.0	NM_080556	68059.0	Mm.275191	NM_080556	ENSMUSG00000025544	Tm9sf2	1500001N15Rik|AA536814|D14Ertd64e|P76	transmembrane 9 superfamily member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75132686-2	chr8	75132202	75133202	+	662.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23193.0	NM_008566	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	0.0	0.0	0.0	2.0	0.0	1.5
Merged-chr14-61498962-2	chr14	61498462	61499462	+	662.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_045714, intron 2 of 2)	intron (NR_045714, intron 2 of 2)	6274.0	NR_045714	75349.0	Mm.233613	NR_045714	ENSMUSG00000115656	4930556J02Rik	-	RIKEN cDNA 4930556J02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-33241057-2	chr4	33240557	33241557	+	662.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	7730.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80055149-2	chr12	80054649	80055649	+	662.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57864.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-77061659-3	chr5	77061155	77062155	+	662.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027970)	TTS (NM_027970)	33612.0	NM_001159901	74318.0	Mm.181852	NM_175606	ENSMUSG00000059325	Hopx	1110018K11Rik|1200015P04Rik|2300002F06Rik|AI848177|AW490897|Cameo|Hdop|Hod|Hop|Ob1|Obl|Toto	HOP homeobox	protein-coding	0.0	0.0	2.0	0.0	0.0	2.0
Merged-chr5-117127259-3	chr5	117126766	117127766	+	662.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199685, intron 1 of 20)	intron (NM_001199685, intron 1 of 20)	-6322.0	NM_001081308	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	0.0	8.0	0.0	0.0	0.0	0.0
Merged-chr15-84631770-3	chr15	84631269	84632269	+	662.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31437.0	NM_001346662	109270.0	Mm.291372	NM_146061	ENSMUSG00000036106	Prr5	AU043908|Arhgap8|C030017C09Rik|C78947|Protor-1|Protor1	proline rich 5 (renal)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28904891-3	chr17	28904374	28905374	+	662.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045457)	promoter-TSS (NR_045457)	-391.0	NR_045457	74179.0	Mm.248931	NR_045457	ENSMUSG00000085333	1700030A11Rik	-	RIKEN cDNA 1700030A11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-62328966-1	chr1	62328466	62329466	+	662.333313	f0_balb.idr	intron (NM_001081050, intron 16 of 22)	intron (NM_001081050, intron 16 of 22)	-192857.0	NR_151537	105243940.0		NR_151537		Pard3bos2	Gm12747	par-3 family cell polarity regulator beta, opposite strand 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53534108-3	chr19	53533658	53534658	+	662.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085390, intron 2 of 3)	intron (NM_001085390, intron 2 of 3)	4840.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-70843274-2	chr6	70842774	70843774	+	662.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1241.0	NM_010121	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104115170-3	chr8	104114671	104115671	+	662.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 2 of 11)	MTE2b|LTR|ERVL-MaLR	-9298.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-30755187-3	chr11	30754673	30755673	+	662.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-16602.0	NM_134013	103554.0	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	1.0	10.5	1.0	0.0	0.0	1.5
Merged-chr9-25073174-3	chr9	25072586	25073586	+	662.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78695.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3825756-1	chr7	3825256	3826256	+	662.333313	f0_c57.idr	intron (NM_001289428, intron 11 of 12)	intron (NM_001289428, intron 11 of 12)	19295.0	NM_011089	18725.0	Mm.482470	NM_011089	ENSMUSG00000089942	Pira2	6M23	paired-Ig-like receptor A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80076462-1	chr15	80075962	80076962	+	662.333313	f0_balb.idr	Intergenic	Intergenic	2117.0	NR_028282	100302601.0		NR_028282	ENSMUSG00000077734	Snord83b	MBII-10	small nucleolar RNA, C/D box 83B	snoRNA	35.5	101.0	67.5	45.0	69.0	61.0
Merged-chr2-18609680-3	chr2	18609079	18610079	+	662.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-62883.0	NM_147778	12238.0	Mm.249586	NM_147778	ENSMUSG00000051154	Commd3	AW550818|Bup|D2Ertd542e	COMM domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88221252-5	chr1	88220890	88221890	+	662.299988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-5630.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35144550-2	chr7	35144071	35145071	+	662.299988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25278.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	20.0	17.0	3.0	8.0	13.5	5.0
Merged-chr4-130794172-3	chr4	130793690	130794690	+	662.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	MIR3|SINE|MIR	1653.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-33171952-3	chr14	33171421	33172421	+	662.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146022, intron 1 of 58)	intron (NM_001146022, intron 1 of 58)	13145.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93961918-2	chr2	93961418	93962418	+	662.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4818.0	NM_001145034	620695.0	Mm.482106	NM_001145034	ENSMUSG00000087006	Gm13889	Ag2	predicted gene 13889	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21771641-1	chr13	21771141	21772141	+	662.25	f0_c57.idr	Intergenic	RLTR45|LTR|ERVK	8984.0	NM_020034	56702.0	Mm.221314	NM_020034	ENSMUSG00000058773	Hist1h1b	H1.5|H1B|H1f5|H1s-3	histone cluster 1, H1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151497173-2	chr1	151496632	151497632	+	662.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360847, intron 1 of 7)	B2_Mm2|SINE|B2	3859.0	NM_001360845	19821.0	Mm.474038	NM_011277	ENSMUSG00000026484	Rnf2	AI326319|AI450156|AU019207|Ring1B|dinG	ring finger protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50946536-2	chr9	50946040	50947040	+	662.25	f0_balb.idr|f0_c57.idr	intron (NM_178710, intron 3 of 15)	intron (NM_178710, intron 3 of 15)	62533.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-51961555-2	chr15	51961055	51962055	+	662.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30205.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20702732-2	chr16	20702232	20703232	+	662.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009900)	TTS (NM_009900)	7675.0	NM_133778	78408.0	Mm.196512	NM_133778	ENSMUSG00000050821	Fam131a	2900046G09Rik	family with sequence similarity 131, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-45448826-3	chr5	45448347	45449347	+	662.211121	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024236, intron 1 of 6)	MTD|LTR|ERVL-MaLR	1382.0	NM_024236	110391.0	Mm.30204	NM_024236	ENSMUSG00000015806	Qdpr	2610008L04Rik|D5Ertd371e|Dhpr|PKU2	quinoid dihydropteridine reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65677031-2	chr18	65676482	65677482	+	662.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361052, intron 6 of 8)	intron (NM_001361052, intron 6 of 8)	-21286.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	1.5	0.0	2.0	0.0	0.0	0.0
Merged-chr15-41536428-2	chr15	41535928	41536928	+	662.166687	f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 2 of 17)	intron (NR_152565, intron 2 of 17)	87325.0	NM_001358977	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63467805-3	chr14	63467301	63468301	+	662.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31407.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-20792224-3	chr5	20791667	20792667	+	662.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172992, intron 8 of 17)	RLTR17|LTR|ERVK	89957.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44398783-2	chr7	44398283	44399283	+	662.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_016663, intron 9 of 10)	intron (NM_016663, intron 9 of 10)	14657.0	NM_016663	20981.0	Mm.4824	NM_016663	ENSMUSG00000030731	Syt3	AI385753|sytIII	synaptotagmin III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98781171-2	chr11	98780671	98781671	+	662.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-5794.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-78948327-4	chr3	78947797	78948797	+	662.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	196590.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.0	4.0	0.0	0.0	3.0	0.0
Merged-chr11-117651963-2	chr11	117651463	117652463	+	662.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-2326.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50437457-3	chr11	50436910	50437910	+	662.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6299.0	NM_172557	216724.0	Mm.390400	NM_172557	ENSMUSG00000020375	Rufy1	3000002E04Rik|Rabip4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34080543-1	chr17	34080043	34081043	+	662.0	f1_c57bl6.idr	Intergenic	Intergenic	-11836.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	14.5	4.0	1.5	0.0	1.5	4.5
Merged-chr6-38899476-2	chr6	38898976	38899976	+	662.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-19510.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87083439-2	chr17	87082939	87083939	+	662.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME4b|LINE|L1	-24240.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	13.0	6.5	10.0	13.0	6.5	10.0
Merged-chr5-122652090-2	chr5	122651590	122652590	+	662.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001284402, intron 1 of 12)	intron (NM_001284402, intron 1 of 12)	1666.0	NM_001284402	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	0.0	3.5	2.5	0.0	4.0	0.5
Merged-chr19-23058580-2	chr19	23058080	23059080	+	662.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82646.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	9.0	24.0	5.0	1.0	0.0	8.0
Merged-chr13-67334903-2	chr13	67334403	67335403	+	662.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-2343.0	NM_177622	218314.0	Mm.289695	NM_177622	ENSMUSG00000057842	Zfp595	A230042K10Rik|Rslcan23	zinc finger protein 595	protein-coding	0.0	3.0	1.0	4.0	0.0	3.0
Merged-chr3-69239402-1	chr3	69238902	69239902	+	662.0	f1_c57bl6.idr	Intergenic	L1MC4|LINE|L1	16983.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	5.5	5.0	0.0	2.0	4.0	3.5
Merged-chr8-108719880-2	chr8	108719380	108720380	+	662.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	5236.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47013044-1	chr14	47012544	47013544	+	662.0	f0_balb.idr	intron (NM_001163433, intron 1 of 11)	intron (NM_001163433, intron 1 of 11)	11704.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	0.0	0.0	2.5	1.0	0.0	0.0
Merged-chr9-107746710-2	chr9	107746202	107747202	+	662.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153190, intron 16 of 23)	intron (NR_153190, intron 16 of 23)	24300.0	NM_148930	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	9.5	5.0	4.0	5.0	25.5	7.5
Merged-chr1-173762686-1	chr1	173762186	173763186	+	662.0	f0_c57.idr	intron (NM_008329, intron 1 of 8)	intron (NM_008329, intron 1 of 8)	4233.0	NM_008329	15951.0	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64437335-1	chr13	64436835	64437835	+	662.0	f1_balb.idr	intron (NM_053180, intron 5 of 7)	intron (NM_053180, intron 5 of 7)	4782.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	2.5	5.5	2.5	0.0	3.0	1.5
Merged-chr17-35700658-3	chr17	35700185	35701185	+	662.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198833)	promoter-TSS (NM_001198833)	-95.0	NM_001198833	12305.0	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	1.0	0.0	0.0	0.0	1.0	2.5
Merged-chr2-5421827-3	chr2	5421344	5422344	+	662.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030601, intron 1 of 1)	MTD|LTR|ERVL-MaLR	42454.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128458233-1	chr8	128457733	128458733	+	662.0	f0_balb.idr	intron (NM_001358959, intron 7 of 16)	intron (NM_001358959, intron 7 of 16)	98992.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110727842-2	chr11	110727334	110728334	+	662.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-240199.0	NM_010604	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20392912-2	chr14	20392412	20393412	+	662.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025440, intron 1 of 2)	intron (NM_025440, intron 1 of 2)	578.0	NR_155747	66242.0	Mm.23747	NM_025440	ENSMUSG00000049960	Mrps16	1500011E11Rik|Mprs16|S16mt	mitochondrial ribosomal protein S16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-51554012-1	chr5	51553512	51554512	+	662.0	f1_balb.idr	promoter-TSS (NM_008904)	promoter-TSS (NM_008904)	-91.0	NM_008904	19017.0	Mm.259072	NM_008904	ENSMUSG00000029167	Ppargc1a	A830037N07Rik|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	protein-coding	0.5	0.0	1.0	0.0	3.0	1.0
Merged-chr6-137665903-2	chr6	137665403	137666403	+	662.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16618.0	NM_007945	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33965856-1	chr17	33965356	33966356	+	662.0	f1_balb.idr	intron (NM_001357329, intron 19 of 19)	intron (NM_001357329, intron 19 of 19)	9766.0	NM_001357329	224705.0	Mm.448614	NM_172620	ENSMUSG00000024319	Vps52	ARE1|D130068D18|D430041K17Rik|SAC2|Sacm2l|tclw5	VPS52 GARP complex subunit	protein-coding	3.0	0.0	2.0	0.0	0.0	1.5
Merged-chr9-21630235-2	chr9	21629735	21630735	+	662.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357764, intron 1 of 34)	B2_Mm1a|SINE|B2	14066.0	NM_001174078	20586.0	Mm.286593	NM_011417	ENSMUSG00000032187	Smarca4	BAF190A|Brg1|HP1-BP72|SNF2beta|SW1/SNF|b2b508.1Clo|b2b692Clo	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-50134877-1	chr18	50134377	50135377	+	662.0	f1_c57bl6.idr	intron (NM_008292, intron 2 of 23)	intron (NM_008292, intron 2 of 23)	6676.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	22.0	33.0	41.5	3.0	1.5	0.0
Merged-chr4-145244948-2	chr4	145244448	145245448	+	662.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	MIRb|SINE|MIR	1922.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-133549599-1	chr3	133549099	133550099	+	662.0	f0_balb.idr	Intergenic	Intergenic	-5209.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56620346-1	chr18	56619846	56620846	+	662.0	f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	31998.0	NM_026099	67343.0	Mm.87057	NM_026099	ENSMUSG00000032900	Tex43	1700065I17Rik|Tseg7	testis expressed 43	protein-coding	5.5	0.0	0.0	0.0	0.0	2.0
Merged-chr17-47754005-1	chr17	47753505	47754505	+	662.0	f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	B1_Mur3|SINE|Alu	16074.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	13.5	50.0	30.0	12.5	26.5	31.0
Merged-chr3-94886198-2	chr3	94885698	94886698	+	662.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008945, exon 3 of 7)	exon (NM_008945, exon 3 of 7)	760.0	NM_008945	19172.0	Mm.368	NM_008945	ENSMUSG00000005779	Psmb4	Pros-27	proteasome (prosome, macropain) subunit, beta type 4	protein-coding	4.0	3.5	5.0	0.0	5.5	0.5
Merged-chr18-53914383-1	chr18	53913883	53914883	+	662.0	f0_balb.idr	intron (NM_152809, intron 4 of 12)	intron (NM_152809, intron 4 of 12)	52270.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	0.0	0.0	2.5	0.0	0.0	2.5
Merged-chr8-69907963-2	chr8	69907465	69908465	+	662.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145596, exon 13 of 13)	3' UTR (NM_145596, exon 13 of 13)	-5407.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	8.0	9.5	4.5	1.5	15.0	7.0
Merged-chr10-75339094-2	chr10	75338594	75339594	+	662.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12961.0	NR_033602	544707.0	Mm.349862	NR_033602	ENSMUSG00000112471	Gm5779	EG544707	ribosomal protein, large, P0 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34171935-2	chr5	34171435	34172435	+	662.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2409.0	NM_001289803	272158.0	Mm.319286	NM_181857	ENSMUSG00000045102	Poln	POL4P	DNA polymerase N	protein-coding	13.5	25.0	8.0	17.0	1.0	23.0
Merged-chr14-106439488-1	chr14	106438988	106439988	+	662.0	f0_balb.idr	intron (NR_045938, intron 2 of 3)	intron (NR_045938, intron 2 of 3)	47032.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-56421400-1	chr13	56420900	56421900	+	662.0	f0_balb.idr	Intergenic	L1MD1|LINE|L1	-16955.0	NM_177809	328258.0	Mm.482177	NM_177809	ENSMUSG00000021509	Slc25a48	AU042651|E230025K15	solute carrier family 25, member 48	protein-coding	0.0	0.0	0.0	2.0	0.0	0.0
Merged-chr9-115469481-1	chr9	115468981	115469981	+	662.0	f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	87662.0	NR_130329	100316675.0		NR_130329	ENSMUSG00000080409	Mir467h	Mirn467h|mmu-mir-467h	microRNA 467h	ncRNA	4.0	0.0	11.5	2.5	0.0	3.5
Merged-chr19-46658391-2	chr19	46657891	46658891	+	662.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14609.0	NM_007809	13074.0	Mm.1262	NM_007809	ENSMUSG00000003555	Cyp17a1	Cyp17|p450c17	cytochrome P450, family 17, subfamily a, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-6189633-2	chr7	6189133	6190133	+	662.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001146024, exon 5 of 5)	exon (NM_001146024, exon 5 of 5)	-7457.0	NM_178028	232836.0	Mm.246599	NM_178028	ENSMUSG00000034660	Galp	-	galanin-like peptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112989660-2	chr13	112989160	112990160	+	662.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081062, exon 3 of 3)	exon (NM_001081062, exon 3 of 3)	1858.0	NM_001081062	218630.0	Mm.25457	NM_001081062	ENSMUSG00000042417	Ccno	C86987|Ccnu|E130318K11|UDG2|Ung2	cyclin O	protein-coding	1.5	0.0	0.0	1.5	0.0	0.0
Merged-chr13-76304879-1	chr13	76304379	76305379	+	662.0	f0_balb.idr	Intergenic	Intergenic	-80082.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	4.0	1.0	1.5	6.0	7.0	1.0
Merged-chr14-67146795-2	chr14	67146295	67147295	+	662.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74324.0	NM_001205188	71978.0	Mm.273997	NM_028032	ENSMUSG00000022052	Ppp2r2a	2410004D02Rik|mKIAA1541	protein phosphatase 2, regulatory subunit B, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127628357-2	chr10	127627858	127628858	+	662.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7210.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	2.0	0.0	0.5	0.5	2.0	6.5
Merged-chr2-114140894-1	chr2	114140394	114141394	+	662.0	f0_balb.idr	exon (NM_009702, exon 16 of 35)	exon (NM_009702, exon 16 of 35)	9676.0	NR_105968	102465982.0		NR_105968	ENSMUSG00000098464	Mir7002	Gm27429|mmu-mir-7002	microRNA 7002	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-66821976-1	chr4	66821476	66822476	+	662.0	f0_balb.idr	Intergenic	Intergenic	-5575.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120793295-3	chr5	120792822	120793822	+	662.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347450, intron 2 of 5)	intron (NM_001347450, intron 2 of 5)	2208.0	NM_001347450	231699.0	Mm.379383	NM_145210	ENSMUSG00000066867	Oas1e	C87484|oasl7	2'-5' oligoadenylate synthetase 1E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29861996-1	chr11	29861496	29862496	+	662.0	f1_c57bl6.idr	intron (NM_146016, intron 7 of 41)	intron (NM_146016, intron 7 of 41)	-36328.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	5.0	0.0	2.5	0.0	0.0	0.5
Merged-chr6-72393311-2	chr6	72392811	72393811	+	662.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-2644.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126117971-2	chr7	126117471	126118471	+	662.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 14 of 23)	intron (NM_028816, intron 14 of 23)	-35560.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3700670-2	chr19	3700170	3701170	+	662.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7623.0	NM_001358256	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	0.5	0.0	0.0	0.5	0.0	0.0
Merged-chr2-34899249-2	chr2	34898749	34899749	+	662.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028716, intron 11 of 14)	intron (NM_028716, intron 11 of 14)	14727.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25148218-2	chr12	25147738	25148738	+	662.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	19064.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	12.5	31.5	15.0	6.0	18.5	0.0
Merged-chr1-172350792-1	chr1	172350292	172351292	+	662.0	f1_balb.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	9582.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	0.5	2.5	6.0	1.0	3.0	1.0
Merged-chr8-70509007-1	chr8	70508507	70509507	+	662.0	f1_c57bl6.idr	intron (NM_001348227, intron 3 of 3)	B1F|SINE|Alu	938.0	NM_001348229	22186.0	Mm.297372	NM_019883	ENSMUSG00000090137	Uba52	Cep52|D8Ertd21e|Gm1863|Rps27a|Ubb|Ubc	ubiquitin A-52 residue ribosomal protein fusion product 1	protein-coding	15.0	19.0	11.0	4.5	22.0	26.0
Merged-chr6-125161742-2	chr6	125161231	125162231	+	662.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001302779)	TTS (NM_001302779)	4042.0	NM_008084	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	2.0	0.0	0.5	0.0	9.0	1.0
Merged-chr19-41318959-2	chr19	41318491	41319491	+	662.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 8 of 16)	intron (NM_031376, intron 8 of 16)	-54987.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.0	4.0	2.5	0.0	0.0	0.0
Merged-chr3-52047781-1	chr3	52047281	52048281	+	662.0	f0_balb.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	57225.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-146532637-2	chr4	146532137	146533137	+	662.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243139, intron 2 of 3)	intron (NM_001243139, intron 2 of 3)	14236.0	NR_045468	67524.0	Mm.444300	NR_045468	ENSMUSG00000086046	1700095A21Rik	-	RIKEN cDNA 1700095A21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-183116739-1	chr1	183116239	183117239	+	662.0	f0_balb.idr	intron (NM_001278218, intron 3 of 8)	intron (NM_001278218, intron 3 of 8)	30818.0	NM_001278220	68897.0	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched RND transporter family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127635780-2	chr10	127635280	127636280	+	662.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-7206.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	3.0	7.5	4.5	4.5	0.5	1.5
Merged-chr11-118978320-2	chr11	118977820	118978820	+	662.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9861.0	NM_001359574	238011.0	Mm.244114	NM_001030291	ENSMUSG00000046697	Enpp7	Alk-SMase|Gm254	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-83574872-2	chr9	83574377	83575377	+	662.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	MTC|LTR|ERVL-MaLR	26539.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	6.0	14.5	9.5	12.0	31.0	18.5
Merged-chr4-117071123-1	chr4	117070623	117071623	+	662.0	f1_c57bl6.idr	3' UTR (NM_175135, exon 10 of 10)	3' UTR (NM_175135, exon 10 of 10)	-24933.0	NM_001312903	19207.0	Mm.287037	NM_008958	ENSMUSG00000028681	Ptch2	ptc2	patched 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31138645-2	chr17	31138145	31139145	+	662.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5637.0	NM_009363	21785.0	Mm.1825	NM_009363	ENSMUSG00000024028	Tff2	SP|mSP	trefoil factor 2 (spasmolytic protein 1)	protein-coding	1.0	7.0	0.0	10.0	0.0	1.5
Merged-chr18-62181029-2	chr18	62180532	62181532	+	662.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013754, intron 1 of 1)	B3|SINE|B2	932.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	23.0	66.0	22.5	28.0	82.5	42.0
Merged-chr14-106500858-1	chr14	106500358	106501358	+	662.0	f0_balb.idr	Intergenic	Intergenic	-14338.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr1-173440933-1	chr1	173440433	173441433	+	662.0	f1_balb.idr	intron (NM_001013779, intron 2 of 8)	intron (NM_001013779, intron 2 of 8)	20329.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	7.0	22.5	18.5	1.5	11.0	13.5
Merged-chr11-107466594-1	chr11	107466094	107467094	+	662.0	f0_balb.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	4126.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	5.5	5.0	9.0	4.5	2.5	3.0
Merged-chr8-84814281-2	chr8	84813781	84814781	+	662.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8542.0	NM_201227	23863.0	Mm.304252	NM_201227	ENSMUSG00000053226	Dand5	Cerl-2|Cerl2|Cerr2|Dte|GREM3|coco	DAN domain family member 5, BMP antagonist	protein-coding	2.0	3.5	8.0	0.0	0.0	0.0
Merged-chr18-74215540-1	chr18	74215040	74216040	+	662.0	f1_c57bl6.idr	promoter-TSS (NM_028868)	promoter-TSS (NM_028868)	-672.0	NM_028868	74322.0	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	21.5	42.0	32.5	8.0	50.0	14.5
Merged-chr2-132240653-2	chr2	132240153	132241153	+	662.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027478, intron 3 of 3)	intron (NM_027478, intron 3 of 3)	7135.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13287233-2	chr16	13286733	13287733	+	662.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122667, intron 2 of 16)	RMER19A|LTR|ERVK	22154.0	NM_181860	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-130117342-1	chr7	130116842	130117842	+	662.0	f0_balb.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	149466.0	NM_010207	14183.0	Mm.16340	NM_010207	ENSMUSG00000030849	Fgfr2	AU043015|AW556123|Bek|Fgfr-2|Fgfr-7|Fgfr7|KGFR|KGFRTr|svs	fibroblast growth factor receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115563887-1	chr5	115563387	115564387	+	662.0	f1_c57bl6.idr	TTS (NM_007475)	TTS (NM_007475)	-1376.0	NM_172719	231659.0	Mm.153014	NM_172719	ENSMUSG00000041638	Gcn1l1	4932409G22|AL022764|G431004K08Rik|GCN1L|Gcn1|mKIAA0219	GCN1 general control of amino-acid synthesis 1-like 1 (yeast)	protein-coding	20.5	14.5	15.5	12.5	3.0	17.5
Merged-chr9-7826756-2	chr9	7826256	7827256	+	662.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007465, intron 3 of 7)	B4A|SINE|B4	10050.0	NM_001291503	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81392402-2	chr10	81391902	81392902	+	662.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001099917)	promoter-TSS (NM_001099917)	-662.0	NM_001099917	72273.0	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-32087880-1	chr14	32087380	32088380	+	662.0	f1_balb.idr	intron (NM_145460, intron 1 of 7)	B2_Mm1a|SINE|B2	2152.0	NM_145460	218885.0	Mm.202257	NM_145460	ENSMUSG00000021906	Oxnad1	2410002F01Rik|AW492292|BC019806	oxidoreductase NAD-binding domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134854936-2	chr4	134854436	134855436	+	662.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1591.0	NM_025382	66146.0	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61|Maco1	transmembrane protein 57	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91534680-4	chr16	91534181	91535181	+	661.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7137.0	NR_105786	102465190.0		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr3-54111343-3	chr3	54110852	54111852	+	661.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44705.0	NM_001253683	22066.0	Mm.10100	NM_016984	ENSMUSG00000027748	Trpc4	CCE1|STRPC4|Trp4|Trrp4	transient receptor potential cation channel, subfamily C, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38693543-3	chr16	38693037	38694037	+	661.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 1 of 11)	MTD|LTR|ERVL-MaLR	19498.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139434223-4	chr7	139433694	139434694	+	661.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355162, intron 1 of 15)	intron (NM_001355162, intron 1 of 15)	33700.0	NM_001355162	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73534766-3	chr12	73534261	73535261	+	661.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11634.0	NM_178715	238257.0	Mm.251196	NM_178715	ENSMUSG00000034435	Tmem30b	9130011B11Rik	transmembrane protein 30B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91281372-3	chr6	91280867	91281867	+	661.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68603.0	NM_007992	14115.0	Mm.249146	NM_007992	ENSMUSG00000064080	Fbln2	5730577E14Rik|FIBL-2	fibulin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91595457-2	chr16	91594957	91595957	+	661.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_030018, intron 1 of 6)	intron (NM_030018, intron 1 of 6)	2223.0	NM_030018	77975.0	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88662241-2	chr15	88661741	88662741	+	661.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61939.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47740508-2	chr17	47740008	47741008	+	661.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	B3A|SINE|B2	2577.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	1.0	7.5	2.5	1.0	4.5	5.5
Merged-chr4-140958978-2	chr4	140958478	140959478	+	661.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1076.0	NR_045911	100126227.0	Mm.404073	NR_045911	ENSMUSG00000087698	Gm13031	-	predicted gene 13031	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106601226-3	chr8	106600753	106601753	+	661.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-2097.0	NM_009864	12550.0	Mm.35605	NM_009864	ENSMUSG00000000303	Cdh1	AA960649|ARC-1|E-cad|Ecad|L-CAM|UVO|Um	cadherin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-94821411-3	chr3	94820883	94821883	+	661.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16184.0	NM_001165948	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	18.0	28.0	26.0	25.0	28.5	23.5
Merged-chr6-56617660-2	chr6	56617160	56618160	+	661.700012	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	87039.0	NM_025520	66373.0	Mm.25642	NM_025520	ENSMUSG00000091625	Lsm5	2010208O10Rik|2310034K10Rik	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4542110-2	chr7	4541610	4542610	+	661.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360421, intron 6 of 8)	intron (NM_001360421, intron 6 of 8)	5431.0	NM_001360421	53420.0	Mm.358663	NM_016908	ENSMUSG00000004961	Syt5	SytV	synaptotagmin V	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr9-59292306-3	chr9	59291820	59292820	+	661.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359282, intron 1 of 6)	intron (NM_001359282, intron 1 of 6)	748.0	NM_028121	72141.0	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165907296-3	chr2	165906820	165907820	+	661.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-22482.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.0	0.0	0.0	0.0	3.5	0.0
Merged-chr16-64748439-3	chr16	64747929	64748929	+	661.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22510.0	NM_026273	67609.0	Mm.212157	NM_026273	ENSMUSG00000059920	4930453N24Rik	AI649104|din	RIKEN cDNA 4930453N24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40391599-3	chr9	40391118	40392118	+	661.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 2 of 20)	intron (NM_001357617, intron 2 of 20)	-15201.0	NM_001357621	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117074711-3	chr8	117074208	117075208	+	661.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 4 of 42)	intron (NM_029686, intron 4 of 42)	7741.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6689915-2	chr2	6689415	6690415	+	661.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	RSINE1|SINE|B4	31747.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46136207-5	chr19	46135717	46136717	+	661.650024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007703)	TTS (NM_007703)	4318.0	NM_007703	12686.0	Mm.21806	NM_007703	ENSMUSG00000038754	Elovl3	CIN-2|Cig30	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136128149-3	chr1	136127642	136128642	+	661.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046169, intron 2 of 2)	intron (NR_046169, intron 2 of 2)	3041.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12236891-2	chr15	12236391	12237391	+	661.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172958, intron 5 of 15)	MTA_Mm|LTR|ERVL-MaLR	31863.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106268445-2	chr9	106267965	106268965	+	661.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12596.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	11.5	0.0	0.0	0.5	0.0	0.0
Merged-chr19-3945983-2	chr19	3945483	3946483	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019449, intron 9 of 10)	intron (NM_019449, intron 9 of 10)	10797.0	NM_001161428	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61990056-2	chr11	61989556	61990556	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310526, intron 1 of 7)	intron (NM_001310526, intron 1 of 7)	33293.0	NM_001310526	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-142994109-2	chr6	142993609	142994609	+	661.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29657.0	NM_011374	20449.0	Mm.260838	NM_011374	ENSMUSG00000030283	St8sia1	9330109E03Rik|GD3S|Sia-T|Siat8|Siat8a	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20696314-2	chr14	20695814	20696814	+	661.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_028428, exon 2 of 3)	exon (NM_028428, exon 2 of 3)	1346.0	NM_028428	73068.0	Mm.277552	NM_028428	ENSMUSG00000039357	Fut11	3110009G03Rik|AI317183	fucosyltransferase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120105496-2	chr8	120104996	120105996	+	661.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-4024.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46893667-2	chr8	46893167	46894167	+	661.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93220.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-106847754-2	chr13	106847258	106848258	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360897, intron 26 of 30)	B4|SINE|B4	89200.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	12.0	0.5	2.0	10.5	0.5	0.5
Merged-chr6-97284007-2	chr6	97283547	97284547	+	661.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-31267.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	19.5	18.5	15.0	12.0	16.5	16.5
Merged-chr8-54031024-2	chr8	54030524	54031524	+	661.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-46508.0	NM_009506	22341.0	Mm.1402	NM_009506	ENSMUSG00000031520	Vegfc	AW228853|VEGF-C	vascular endothelial growth factor C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-66472622-2	chr18	66472122	66473122	+	661.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14018.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	1.5	0.0	2.5	0.0	0.0	2.5
Merged-chr12-3890025-2	chr12	3889525	3890525	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 6 of 22)	intron (NM_007872, intron 6 of 22)	-1719.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191041946-2	chr1	191041446	191042446	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029336, intron 2 of 2)	ORR1D2|LTR|ERVL-MaLR	5124.0	NM_029336	75558.0	Mm.383398	NM_029336	ENSMUSG00000057072	Spata45	1700022P22Rik	spermatogenesis associated 45	protein-coding	0.0	3.5	1.0	18.5	1.0	2.0
Merged-chr11-5103448-2	chr11	5102948	5103948	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177370, intron 5 of 8)	intron (NM_177370, intron 5 of 8)	3283.0	NM_001290493	279766.0	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	2.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-33958983-2	chr11	33958483	33959483	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190886, intron 1 of 7)	ORR1F|LTR|ERVL-MaLR	-4030.0	NM_031169	16533.0	Mm.6206	NM_031169	ENSMUSG00000020155	Kcnmb1	BKbeta1	potassium large conductance calcium-activated channel, subfamily M, beta member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55195370-2	chr11	55194870	55195870	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_046034, intron 2 of 2)	intron (NR_046034, intron 2 of 2)	2312.0	NR_046034	74045.0	Mm.292156	NR_046034	ENSMUSG00000084980	Slc36a1os	4921508A21Rik	solute carrier family 36 (proton/amino acid symporter), member 1, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173017387-2	chr2	173016887	173017887	+	661.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4515.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	1.5	1.0	3.5	0.0	3.0	1.0
Merged-chr16-23981482-2	chr16	23980982	23981982	+	661.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348026)	promoter-TSS (NM_001348026)	-199.0	NM_001348026	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83505926-2	chr6	83505398	83506398	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_149734, intron 1 of 6)	intron (NR_149734, intron 1 of 6)	1071.0	NM_013764	27369.0	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	26.0	46.5	35.5	27.5	54.0	36.5
Merged-chr9-88706777-2	chr9	88706277	88707277	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359992, intron 2 of 2)	intron (NM_001359992, intron 2 of 2)	12810.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79980427-2	chr10	79979927	79980927	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359632, intron 1 of 9)	RSINE1|SINE|B4	3833.0	NM_001359632	216157.0	Mm.29442	NM_001003949	ENSMUSG00000013858	Tmem259	AC087114.7gm2|ORF61|R32184_3|mFLJ00277	transmembrane protein 259	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79668371-2	chr10	79667871	79668871	+	661.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013591, exon 5 of 5)	3' UTR (NM_013591, exon 5 of 5)	-1039.0	NM_148934	110012.0	Mm.22623	NM_148934	ENSMUSG00000020308	Tpgs1	AV005629|Gm16517|Gtrgeo22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-35113665-2	chr6	35113165	35114165	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164413, intron 1 of 11)	L1M4|LINE|L1	20072.0	NM_001164412	53621.0	Mm.214525	NM_016877	ENSMUSG00000038784	Cnot4	Not4|Not4h|Not4hp	CCR4-NOT transcription complex, subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146753166-2	chr5	146752666	146753666	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 4 of 8)	intron (NM_011669, intron 4 of 8)	41790.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0.0	2.5	1.5	3.0	0.0	0.0
Merged-chr17-29099224-3	chr17	29098720	29099720	+	661.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111099, intron 2 of 2)	intron (NM_001111099, intron 2 of 2)	5451.0	NM_007669	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr16-52418962-2	chr16	52418462	52419462	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009655, intron 1 of 15)	intron (NM_009655, intron 1 of 15)	34119.0	NM_009655	11658.0	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88557037-2	chr5	88556537	88557537	+	661.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023054)	TTS (NM_023054)	2575.0	NM_023054	65961.0	Mm.490364	NM_023054	ENSMUSG00000070697	Utp3	2400011K09Rik|AW557551|C87704|Crl-1|Crl1|Crlz1|Sas10	UTP3 small subunit processome component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67764973-1	chr5	67764473	67765473	+	661.5	f0_balb.idr	exon (NM_009727, exon 12 of 36)	exon (NM_009727, exon 12 of 36)	82458.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111150082-2	chr12	111149582	111150582	+	661.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16288.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102380788-2	chr12	102380288	102381288	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 7 of 9)	MTE2a|LTR|ERVL-MaLR	59025.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	2.0	9.0	11.5	5.5	16.5	12.5
Merged-chr14-73451827-3	chr14	73451322	73452322	+	661.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58227.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64113838-2	chr1	64113338	64114338	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	7551.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3290820-2	chr12	3290320	3291320	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 1 of 5)	intron (NM_016676, intron 1 of 5)	19149.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-178407755-2	chr2	178407255	178408255	+	661.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177191)	promoter-TSS (NM_177191)	-97.0	NM_177191	320558.0	Mm.70781	NM_177191	ENSMUSG00000060445	Sycp2	3830402K23Rik|4930518F03Rik	synaptonemal complex protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-3446777-2	chr17	3446277	3447277	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011878, intron 9 of 26)	intron (NM_011878, intron 9 of 26)	-35538.0	NM_001286758	24001.0	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97460004-2	chr6	97459504	97460504	+	661.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346639)	promoter-TSS (NM_001346639)	-718.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	23.5	56.0	50.0	14.5	48.0	33.0
Merged-chr18-68066203-2	chr18	68065703	68066703	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 2 of 5)	intron (NM_172631, intron 2 of 5)	133030.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36076407-2	chr1	36075907	36076907	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	8007.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96937729-2	chr11	96937229	96938229	+	661.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_134021)	TTS (NM_134021)	6290.0	NM_134021	103711.0	Mm.254704	NM_134021	ENSMUSG00000018659	Pnpo	AI415282	pyridoxine 5'-phosphate oxidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6628035-2	chr17	6627535	6628535	+	661.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7110.0	NR_028305	100040525.0	Mm.472852	NR_028305		Tmem181c-ps	100040596|Tmem181d-ps	transmembrane protein 181C, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-48194748-2	chr4	48194248	48195248	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355184, intron 10 of 10)	intron (NM_001355184, intron 10 of 10)	18467.0	NR_035484	100316708.0		NR_035484	ENSMUSG00000087844	Mir1958	mmu-mir-1958	microRNA 1958	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101158381-2	chr4	101157881	101158881	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 19 of 24)	intron (NM_146145, intron 19 of 24)	89343.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28357103-2	chr7	28356603	28357603	+	661.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5563.0	NR_028129	100302567.0		NR_028129		AF357399	MBI-142	snoRNA AF357399	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-12579272-2	chr10	12578772	12579772	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 50 of 73)	ORR1D1-int|LTR|ERVL-MaLR	282463.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53893862-2	chr19	53893362	53894362	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011050, intron 1 of 11)	intron (NM_011050, intron 1 of 11)	1631.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	1.0	5.5	1.0	4.5	10.5	4.5
Merged-chr11-43775654-2	chr11	43775154	43776154	+	661.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001284381, exon 5 of 5)	3' UTR (NM_001284381, exon 5 of 5)	-27681.0	NM_133795	66827.0	Mm.271974	NM_133795	ENSMUSG00000041278	Ttc1	4833412C19Rik|C79328|TPR1	tetratricopeptide repeat domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135694476-2	chr3	135693976	135694976	+	661.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2929.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29745453-2	chr2	29744953	29745953	+	661.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16075.0	NM_001177392	433416.0	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	-	predicted gene 13547	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65424878-2	chr18	65424378	65425378	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	-6119.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81644911-2	chr10	81644411	81645411	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027480, intron 17 of 19)	intron (NM_027480, intron 17 of 19)	-4158.0	NM_001142963	100233208.0	Mm.327168	NM_001142963	ENSMUSG00000096856	Gm10778	-	predicted gene 10778	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125844649-2	chr8	125844149	125845149	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175561, intron 15 of 33)	(CTCA)n|Simple_repeat|Simple_repeat	-53265.0	NR_155422	102632990.0	Mm.429446	NR_155422		A730098A19Rik	-	RIKEN cDNA A730098A19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90362918-3	chr7	90362430	90363430	+	661.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040085, intron 4 of 18)	intron (NM_001040085, intron 4 of 18)	-24051.0	NM_001040087	83671.0	Mm.26751	NM_031394	ENSMUSG00000030616	Sytl2	AI266830|Slp2|mKIAA1597	synaptotagmin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108737393-3	chr8	108736912	108737912	+	661.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	22768.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.0	2.0	0.0	3.0	4.5	0.0
Merged-chr14-76479955-3	chr14	76479442	76480442	+	661.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207652, intron 1 of 2)	intron (NM_207652, intron 1 of 2)	-8494.0	NM_001177751	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0.0	0.0	1.0	6.0	6.5	3.0
Merged-chr15-80979584-3	chr15	80979080	80980080	+	661.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357669, intron 1 of 20)	intron (NM_001357669, intron 1 of 20)	1815.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-140971652-2	chr7	140971132	140972132	+	661.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3556.0	NM_001360728	68713.0	Mm.175661	NM_026820	ENSMUSG00000025491	Ifitm1	1110036C17Rik|DSPA2a|Mil-2|Mil2	interferon induced transmembrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47543383-2	chr17	47542883	47543883	+	661.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	38332.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	1.5	0.0	0.5	0.0	1.5	1.0
Merged-chr13-116964644-2	chr13	116964144	116965144	+	661.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	60872.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	17.5	18.5	23.5	3.5	1.0	5.5
Merged-chr3-28103838-3	chr3	28103361	28104361	+	661.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 20 of 25)	RSINE1|SINE|B4	119690.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136357417-1	chr4	136356917	136357917	+	661.333313	f1_balb.idr	Intergenic	Intergenic	45819.0	NM_001355182	74326.0	Mm.31051	NM_028871	ENSMUSG00000066037	Hnrnpr	2610003J05Rik|2610528B01Rik|Hnrpr	heterogeneous nuclear ribonucleoprotein R	protein-coding	8.5	4.5	10.5	7.0	19.0	8.0
Merged-chr17-33717582-3	chr17	33717074	33718074	+	661.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252480, intron 1 of 4)	MIRb|SINE|MIR	1103.0	NM_145486	224703.0	Mm.311439	NM_145486	ENSMUSG00000079557	March2	9530046H09Rik|MARCH-II	membrane-associated ring finger (C3HC4) 2	protein-coding	2.0	3.5	7.0	2.5	3.5	7.0
Merged-chr2-29625852-2	chr2	29625352	29626352	+	661.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	6132.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-97001835-3	chr5	97001295	97002295	+	661.311096	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 1 of 15)	intron (NM_080708, intron 1 of 15)	4106.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	8.0	17.0	19.0	12.5	18.5	21.5
Merged-chr9-107677832-2	chr9	107677289	107678289	+	661.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_008140, intron 1 of 8)	intron (NM_008140, intron 1 of 8)	1803.0	NM_008140	14685.0	Mm.284853	NM_008140	ENSMUSG00000034837	Gnat1	Gnat-1|Ird1|Ird2|Tralpha|irdc|irdr|transducin	guanine nucleotide binding protein, alpha transducing 1	protein-coding	2.5	0.0	0.0	0.5	0.0	2.0
Merged-chr14-120261814-2	chr14	120261314	120262314	+	661.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13855.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143480742-2	chr7	143480242	143481242	+	661.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042760, intron 5 of 10)	intron (NM_001042760, intron 5 of 10)	5626.0	NM_001042760	18400.0	Mm.271740	NM_008767	ENSMUSG00000000154	Slc22a18	AW260131|BWR1A|BWSCR1A|HET|ITM|Impt1|Orctl2|Slc22a1l|TSSC5|p45-BWR1A	solute carrier family 22 (organic cation transporter), member 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191333585-2	chr1	191333070	191334070	+	661.25	f0_balb.idr|f0_c57.idr	intron (NM_025864, intron 2 of 7)	intron (NM_025864, intron 2 of 7)	7605.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	14.5	9.5	21.0	0.0	8.5	7.0
Merged-chr4-26343746-2	chr4	26343246	26344246	+	661.1999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_172865, intron 1 of 4)	Lx8|LINE|L1	2906.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100499408-2	chr7	100498908	100499908	+	661.166687	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011671, exon 8 of 8)	3' UTR (NM_011671, exon 8 of 8)	6050.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90324405-3	chr5	90323925	90324925	+	661.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_198010, intron 1 of 32)	B1_Mur1|SINE|Alu	41760.0	NM_030886	81702.0	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	0.0	4.0	22.0	7.0	16.5	14.0
Merged-chr6-108751536-3	chr6	108751039	108752039	+	661.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31520.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	0.5	0.0	0.0	4.0	0.0	0.5
Merged-chr1-131067183-2	chr1	131066683	131067683	+	661.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	30660.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0.0	9.5	0.0	0.0	5.0	1.0
Merged-chr17-35438054-2	chr17	35437554	35438554	+	661.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER44A|DNA|TcMar-Tigger	-1101.0	NM_010394	15018.0	Mm.431282	NM_010394	ENSMUSG00000060550	H2-Q7	H-2Q7|Ped|Q9|Qa-2|Qa-7|Qa7	histocompatibility 2, Q region locus 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-63246180-2	chr10	63245680	63246680	+	661.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359484, intron 3 of 22)	intron (NM_001359484, intron 3 of 22)	2383.0	NM_001359484	67345.0	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72151491-2	chr6	72150991	72151991	+	661.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 6 of 6)	ID_B1|SINE|B4	-28294.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113493308-2	chr6	113492808	113493808	+	661.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133930)	TTS (NM_133930)	8510.0	NM_172487	210673.0	Mm.133060	NM_172487	ENSMUSG00000045009	Prrt3	6330505P20|B230206N24Rik	proline-rich transmembrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86170598-4	chr17	86170140	86171140	+	661.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	2855.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116258742-2	chr6	116258242	116259242	+	661.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026585, exon 29 of 31)	exon (NM_026585, exon 29 of 31)	-5477.0	NM_001309446	67492.0	Mm.272772	NM_001081317	ENSMUSG00000042213	Zfand4	Anubl1	zinc finger, AN1-type domain 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107939818-2	chr4	107939318	107940318	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14114.0	NR_131071	77223.0	Mm.401926	NR_131071	ENSMUSG00000086713	4930407G08Rik	-	RIKEN cDNA 4930407G08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-79089365-1	chr18	79088865	79089865	+	661.0	f1_c57bl6.idr	intron (NM_053099, intron 1 of 5)	L1_Mus4|LINE|L1	20026.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0.5	0.0	3.5	3.5	0.0	0.0
Merged-chr10-17623925-1	chr10	17623425	17624425	+	661.0	f1_balb.idr	Intergenic	Intergenic	-99303.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	7.5	29.5	10.0	3.5	6.0	9.0
Merged-chr9-120008828-1	chr9	120008328	120009328	+	661.0	f1_balb.idr	Intergenic	Intergenic	14770.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	1.5	0.0	0.5	0.5	0.0	2.5
Merged-chr15-67113153-2	chr15	67112653	67113653	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 4 of 8)	MLT1D|LTR|ERVL-MaLR	63729.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0.0	0.5	5.0	0.0	5.5	1.0
Merged-chr1-74409352-2	chr1	74408852	74409852	+	661.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009509)	promoter-TSS (NM_009509)	-32.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87522985-2	chr17	87522485	87523485	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76050.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64076641-1	chr7	64076141	64077141	+	661.0	f1_c57bl6.idr	Intergenic	Intergenic	-77194.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0.0	0.0	1.5	1.0	0.0	0.0
Merged-chr6-129747567-1	chr6	129747067	129748067	+	661.0	f0_balb.idr	Intergenic	Intergenic	-7083.0	NM_177155	320407.0	Mm.123265	NM_177155	ENSMUSG00000043932	Klri2	A530090P03Rik	killer cell lectin-like receptor family I member 2	protein-coding	12.5	0.5	3.0	8.5	19.0	25.5
Merged-chr4-48418654-2	chr4	48418154	48419154	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281978, intron 15 of 18)	MLT1H2-int|LTR|ERVL-MaLR	54809.0	NM_172304	269536.0	Mm.272025	NM_172304	ENSMUSG00000028345	Tex10	2610206N19Rik|2810462N03Rik|BC006867	testis expressed gene 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-43175864-2	chr18	43175364	43176364	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31833.0	NM_178749	269019.0	Mm.150401	NM_178749	ENSMUSG00000039954	Stk32a	A930015B13Rik|YANK1	serine/threonine kinase 32A	protein-coding	0.0	2.0	6.0	0.0	2.0	2.0
Merged-chr2-111126073-2	chr2	111125573	111126573	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	103527.0	NM_026248	67575.0	Mm.84331	NM_026248	ENSMUSG00000027157	4930430A15Rik	-	RIKEN cDNA 4930430A15 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-78868016-1	chr2	78867516	78868516	+	661.0	f0_balb.idr	Intergenic	Intergenic	-1031.0	NM_009454	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22851535-1	chr11	22851035	22852035	+	661.0	f0_balb.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	8200.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100942063-2	chr7	100941602	100942602	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	-9941.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	1.5	0.0	0.5	4.0	7.0	6.5
Merged-chr10-52381018-2	chr10	52380518	52381518	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053187, intron 1 of 7)	intron (NM_053187, intron 1 of 7)	1106.0	NM_053187	94221.0	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-43829158-1	chr10	43828658	43829658	+	661.0	f0_balb.idr	intron (NR_131055, intron 1 of 2)	ORR1D1|LTR|ERVL-MaLR	3251.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-110193269-1	chr8	110192769	110193769	+	661.0	f0_c57.idr	Intergenic	L2|LINE|L2	-24691.0	NM_146215	234728.0	Mm.275341	NM_146215	ENSMUSG00000046441	Cmtr2	AU022703|C730036L12Rik|Ftsjd1|MTr2	cap methyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-69862262-2	chr2	69861762	69862762	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009278, intron 1 of 11)	intron (NM_009278, intron 1 of 11)	700.0	NM_009278	20823.0	Mm.10508	NM_009278	ENSMUSG00000068882	Ssb	SS-B	Sjogren syndrome antigen B	protein-coding	3.5	11.5	10.0	5.0	20.0	11.0
Merged-chr18-56490141-2	chr18	56489641	56490641	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360917, intron 10 of 13)	ORR1B1|LTR|ERVL-MaLR	-47998.0	NR_106160	102465790.0		NR_106160	ENSMUSG00000099196	Mir1258	Gm27371|mmu-mir-1258	microRNA 1258	ncRNA	31.5	48.5	20.0	11.5	53.5	40.0
Merged-chr2-129582277-2	chr2	129581761	129582761	+	661.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-10578.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	2.0	15.5	1.0	0.0	7.5	4.0
Merged-chr7-19406915-2	chr7	19406415	19407415	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-2811.0	NM_001286039	232943.0	Mm.213403	NM_146182	ENSMUSG00000040714	Klc3	BC017147|Klct	kinesin light chain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36713596-2	chr16	36713096	36714096	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 3 of 7)	RLTR28|LTR|ERVL	19618.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17703596-2	chr16	17703096	17704096	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285886, intron 2 of 16)	intron (NM_001285886, intron 2 of 16)	19304.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127030609-2	chr7	127030109	127031109	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145588, intron 9 of 13)	B3|SINE|B2	-4130.0	NM_010772	17188.0	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52235742-2	chr13	52235242	52236242	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	139001.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39736457-1	chr1	39735957	39736957	+	661.0	f0_balb.idr	Intergenic	Intergenic	-15468.0	NM_001145660	619289.0	Mm.334107	NM_001145660	ENSMUSG00000057173	Rfx8	4933400N17Rik	regulatory factor X 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-14829669-2	chr9	14829169	14830169	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018736, intron 17 of 19)	intron (NM_018736, intron 17 of 19)	-30541.0	NM_001310734	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136453808-1	chr4	136453308	136454308	+	661.0	f1_c57bl6.idr	Intergenic	Intergenic	-15953.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	0.0	1.0	0.0	4.0	0.5	0.5
Merged-chr9-109908345-3	chr9	109907861	109908861	+	661.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18718.0	NR_106057	102465660.0		NR_106057	ENSMUSG00000098490	Mir7089	Gm27418|mmu-mir-7089	microRNA 7089	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-123261703-3	chr6	123261201	123262201	+	661.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010819)	promoter-TSS (NM_010819)	-406.0	NM_001163161	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.0	13.5	1.0	0.0	13.5	1.0
Merged-chr1-161053324-1	chr1	161052824	161053824	+	661.0	f0_balb.idr	intron (NM_172644, intron 10 of 16)	intron (NM_172644, intron 10 of 16)	15232.0	NR_028543	100217446.0		NR_028543	ENSMUSG00000064968	Snord47	MBII-96	small nucleolar RNA, C/D box 47	snoRNA	12.5	19.5	9.0	21.5	71.5	26.0
Merged-chr15-52184279-2	chr15	52183779	52184779	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-111274.0	NM_172816	239436.0	Mm.208831	NM_172816	ENSMUSG00000022315	Slc30a8	C820002P14Rik|ZnT-8|ZnT8	solute carrier family 30 (zinc transporter), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-40914936-1	chr14	40914436	40915436	+	661.0	f0_balb.idr	intron (NM_145928, intron 5 of 8)	intron (NM_145928, intron 5 of 8)	-21971.0	NM_177816	328381.0	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128127627-2	chr7	128127127	128128127	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1941.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	3.0	1.0	3.0	1.0	0.0	5.5
Merged-chr4-137955690-1	chr4	137955190	137956190	+	661.0	f1_balb.idr	intron (NM_199307, intron 15 of 19)	intron (NM_199307, intron 15 of 19)	-37766.0	NM_001256198	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	1.0	8.5	2.0	5.0	2.0	0.5
Merged-chr7-99990606-2	chr7	99990119	99991119	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10161.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	3.0	0.0	0.5	0.0	0.0	1.0
Merged-chr2-90467164-2	chr2	90466664	90467664	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 5 of 23)	MTB_Mm|LTR|ERVL-MaLR	12010.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97955859-2	chr3	97955359	97956359	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033779, intron 1 of 1)	B4A|SINE|B4	25686.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153200871-2	chr2	153200371	153201371	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 14 of 17)	intron (NM_133847, intron 14 of 17)	24570.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-174125619-1	chr2	174125119	174126119	+	661.0	f1_balb.idr	non-coding (NR_040530, exon 4 of 4)	non-coding (NR_040530, exon 4 of 4)	15268.0	NM_213733	228961.0	Mm.295629	NM_213733	ENSMUSG00000039263	Npepl1	BC023239|C85514|mKIAA1974	aminopeptidase-like 1	protein-coding	1.5	0.0	4.0	0.0	0.0	2.5
Merged-chr9-58545680-2	chr9	58545180	58546180	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4740.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155560284-2	chr4	155559784	155560784	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2097.0	NM_138671	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	6.5	14.0	8.0	2.0	18.5	9.5
Merged-chr1-120511248-2	chr1	120510748	120511748	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-6224.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr6-143293527-2	chr6	143293027	143294027	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027803, intron 3 of 3)	5S|rRNA|rRNA	47639.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-172452744-2	chr2	172452244	172453244	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039560, intron 3 of 3)	intron (NM_001039560, intron 3 of 3)	5852.0	NM_001039560	654821.0	Mm.389337	NM_001039560	ENSMUSG00000074569	Gcnt7	A330041C17Rik|gnt	glucosaminyl (N-acetyl) transferase family member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-153514202-1	chr4	153513702	153514702	+	661.0	f0_balb.idr	Intergenic	Intergenic	-31372.0	NM_001099299	230959.0	Mm.318874	NM_001099299	ENSMUSG00000039546	Ajap1	Gm573	adherens junction associated protein 1	protein-coding	1.5	1.0	2.0	1.5	0.0	2.0
Merged-chr11-116425067-2	chr11	116424567	116425567	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9027.0	NM_176902	319370.0	Mm.258466	NM_176902	ENSMUSG00000050628	Ubald2	1110014K08Rik|D030012E24Rik|Fam100b	UBA-like domain containing 2	protein-coding	7.5	27.5	38.5	16.0	52.0	26.0
Merged-chr5-92494426-2	chr5	92493926	92494926	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	11231.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29156698-2	chr7	29156198	29157198	+	661.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146023)	promoter-TSS (NM_001146023)	-488.0	NM_001146023	73833.0	Mm.260890	NM_028661	ENSMUSG00000030590	Fam98c	1110006G06Rik|AI836081|AV026483|B230110F21Rik	family with sequence similarity 98, member C	protein-coding	1.0	14.5	14.5	19.0	7.0	6.5
Merged-chr14-45598798-2	chr14	45598298	45599298	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039106, intron 11 of 11)	intron (NM_001039106, intron 11 of 11)	55088.0	NR_045809	67651.0	Mm.55930	NR_045809	ENSMUSG00000115324	4930527F14Rik	-	RIKEN cDNA 4930527F14 gene	ncRNA	2.0	2.5	4.5	4.5	6.0	2.0
Merged-chr12-116028332-2	chr12	116027811	116028811	+	661.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-19413.0	NM_001004066	56220.0	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding	5.5	14.0	0.0	1.0	0.0	3.0
Merged-chr7-139375539-2	chr7	139375039	139376039	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-13570.0	NM_183144	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47733088-2	chr17	47732588	47733588	+	661.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_025973, exon 7 of 9)	exon (NM_025973, exon 7 of 9)	-3949.0	NM_001161722	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121427379-2	chr5	121426879	121427879	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172722, intron 15 of 23)	intron (NM_172722, intron 15 of 23)	25095.0	NM_026129	67397.0	Mm.154570	NM_026129	ENSMUSG00000029616	Erp29	1200015M03Rik|2810446M09Rik|AW209030|Erp28|Erp31|PDI-Db	endoplasmic reticulum protein 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12427147-2	chr19	12426650	12427650	+	661.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019540)	promoter-TSS (NM_019540)	-755.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	0.0	1.5	2.0	0.0	1.5	2.0
Merged-chr1-151687763-2	chr1	151687263	151688263	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 5 of 13)	(TG)n|Simple_repeat|Simple_repeat	66964.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56799844-1	chr18	56799344	56800344	+	661.0	f0_balb.idr	intron (NM_177115, intron 3 of 4)	L1MC1|LINE|L1	92031.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-10039076-1	chr1	10038576	10039576	+	661.0	f1_balb.idr	promoter-TSS (NR_102282)	promoter-TSS (NR_102282)	858.0	NM_026493	211660.0	Mm.244046	NM_026493	ENSMUSG00000056763	Cspp1	2310020J12Rik|4930413O22Rik|AA387550|BC055915|Cspp2|Cspp3	centrosome and spindle pole associated protein 1	protein-coding	7.5	11.0	8.0	2.5	14.0	12.5
Merged-chr9-107657127-1	chr9	107656627	107657627	+	661.0	f1_balb.idr	intron (NM_001199218, intron 7 of 15)	intron (NM_001199218, intron 7 of 15)	10272.0	NM_023805	76257.0	Mm.296560	NM_023805	ENSMUSG00000010064	Slc38a3	0610012J02Rik|D9Ucla2|Nat1|Slc38-3|Sn1|Snat3|mNAT	solute carrier family 38, member 3	protein-coding	0.0	1.0	0.5	0.0	0.0	0.0
Merged-chr1-184448902-2	chr1	184448402	184449402	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108789.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-89800510-1	chr10	89800010	89801010	+	661.0	f1_balb.idr	intron (NM_029166, intron 12 of 20)	intron (NM_029166, intron 12 of 20)	55519.0	NM_029166	75089.0	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	4.5	0.0	1.5	1.5	1.0	0.0
Merged-chr6-108655867-2	chr6	108655367	108656367	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_104577, intron 1 of 6)	intron (NR_104577, intron 1 of 6)	-4762.0	NM_011498	20893.0	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	3.5	0.0	0.5	0.0	1.5	3.5
Merged-chr15-46584762-2	chr15	46584262	46585262	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-38543.0	NR_045811	75281.0	Mm.159487	NR_045811	ENSMUSG00000051198	4930548G14Rik	-	RIKEN cDNA 4930548G14 gene	ncRNA	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr5-34271923-2	chr5	34271423	34272423	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 1 of 12)	B3|SINE|B2	16401.0	NM_001015039	231125.0	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-69586207-1	chr2	69585707	69586707	+	661.0	f0_balb.idr	promoter-TSS (NM_001081088)	promoter-TSS (NM_001081088)	-140.0	NM_001081088	14725.0	Mm.23847	NM_001081088	ENSMUSG00000027070	Lrp2	AI315343|AW536255|D230004K18Rik|Gp330|Megalin|b2b1625.2Clo	low density lipoprotein receptor-related protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3504099-2	chr4	3503634	3504634	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-32956.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	0.0	0.0	0.0	0.0	5.0	2.0
Merged-chr13-69559958-1	chr13	69559458	69560458	+	661.0	f0_balb.idr	Intergenic	Intergenic	-26094.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	2.0	0.0	1.0	9.0	7.0	7.5
Merged-chr17-71501829-1	chr17	71501329	71502329	+	661.0	f1_balb.idr	intron (NM_023294, intron 13 of 16)	B3|SINE|B2	25028.0	NM_023294	67052.0	Mm.225956	NM_023294	ENSMUSG00000024056	Ndc80	2610020P18Rik|AV139730|HEC|HEC1|Kntc2	NDC80 kinetochore complex component	protein-coding	0.5	6.0	2.0	2.5	5.0	0.5
Merged-chr11-69801683-2	chr11	69801218	69802218	+	661.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291104)	promoter-TSS (NM_001291104)	-2.0	NM_010198	14166.0	Mm.269011	NM_010198	ENSMUSG00000042826	Fgf11	Fgf-11|Fhf-3|Fhf3	fibroblast growth factor 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141465273-2	chr7	141464773	141465773	+	661.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001025103, exon 7 of 10)	exon (NM_001025103, exon 7 of 10)	-1369.0	NR_152220	100126795.0	Mm.386851	NR_152219	ENSMUSG00000073787	Gm10575	-	predicted gene 10575	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-75122397-2	chr1	75121897	75122897	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11493.0	NM_194333	22626.0	Mm.68157	NM_194333	ENSMUSG00000026205	Slc23a3	SVCT3|Yspl1	solute carrier family 23 (nucleobase transporters), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133670430-1	chr4	133669930	133670930	+	661.0	f1_balb.idr	intron (NM_001356466, intron 1 of 3)	intron (NM_001356466, intron 1 of 3)	2217.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	13.5	1.0	2.5	2.0	0.5	7.0
Merged-chr12-65189474-2	chr12	65188968	65189968	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-16888.0	NM_172578	217653.0	Mm.21144	NM_172578	ENSMUSG00000047534	Mis18bp1	6720403H11|C79407|Knl2|mKIAA1903	MIS18 binding protein 1	protein-coding	0.0	4.0	0.0	12.5	0.0	0.0
Merged-chr6-97483478-1	chr6	97482978	97483978	+	661.0	f1_balb.idr	intron (NM_145148, intron 2 of 23)	B4A|SINE|B4	4342.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	60.0	241.0	156.5	48.5	164.5	98.5
Merged-chr10-39421947-2	chr10	39421447	39422447	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	52148.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-28594738-2	chr16	28594238	28595238	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010199, intron 2 of 5)	intron (NM_010199, intron 2 of 5)	5305.0	NR_030463	751543.0		NR_030463	ENSMUSG00000076064	Mir690	Mirn690|mir-690|mmu-mir-690	microRNA 690	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25995594-2	chr8	25995094	25996094	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1473.0	NM_029037	74653.0	Mm.17631	NM_029037	ENSMUSG00000037251	Pomk	4930444A02Rik|Sgk196	protein-O-mannose kinase	protein-coding	0.0	9.0	0.0	7.5	2.5	2.0
Merged-chr16-49928844-2	chr16	49928344	49929344	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26986.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59546499-2	chr4	59545999	59546999	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144904, intron 1 of 14)	intron (NM_144904, intron 1 of 14)	2865.0	NM_178164	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25291506-4	chr10	25291026	25292026	+	661.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 1 of 7)	Tigger5|DNA|TcMar-Tigger	7637.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	1.5	1.5	3.5	15.0	16.5	3.5
Merged-chr17-74536554-2	chr17	74536054	74537054	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007566, intron 1 of 72)	B1_Mm|SINE|Alu	8259.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57889955-3	chr15	57889328	57890328	+	661.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024207, intron 1 of 7)	intron (NM_024207, intron 1 of 7)	2590.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-17263998-1	chr19	17263498	17264498	+	661.0	f1_c57bl6.idr	Intergenic	Intergenic	75507.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	6.0	23.0	31.0	14.0	12.0	11.5
Merged-chr10-87740716-1	chr10	87740216	87741216	+	661.0	f0_balb.idr	Intergenic	Intergenic	-117549.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	3.0	1.0	0.0	6.0	1.0	6.5
Merged-chr12-102754934-2	chr12	102754434	102755434	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142938, intron 1 of 1)	RLTR11A2|LTR|ERVK	2876.0	NM_001142939	100859931.0	Mm.291222	NM_001142939	ENSMUSG00000041716	Gm20604	AK010878-Moap1	predicted gene 20604	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26327991-2	chr2	26327491	26328491	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355575, intron 9 of 13)	ORR1C2|LTR|ERVL-MaLR	8221.0	NM_001199147	67839.0	Mm.266611	NM_153410	ENSMUSG00000026930	Gpsm1	1810037C22Rik|AW107933|Ags3	G-protein signalling modulator 1 (AGS3-like, C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31539352-2	chr14	31538852	31539852	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009937, intron 11 of 16)	intron (NM_009937, intron 11 of 16)	38031.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70207822-2	chr14	70207322	70208322	+	661.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011366)	promoter-TSS (NM_011366)	-151.0	NM_011366	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90445626-3	chr3	90445125	90446125	+	661.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-11989.0	NM_178876	229543.0	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116641418-2	chr11	116640918	116641918	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12895.0	NM_030206	114886.0	Mm.34598	NM_030206	ENSMUSG00000020810	Cygb	3110001K20Rik|HGb|Staap	cytoglobin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71385201-1	chr8	71384701	71385701	+	661.0	f1_balb.idr	3' UTR (NM_181418, exon 13 of 13)	3' UTR (NM_181418, exon 13 of 13)	-3249.0	NM_010150	13864.0	Mm.28989	NM_010150	ENSMUSG00000002393	Nr2f6	AV090102|COUP-TF3|EAR2|Erbal2	nuclear receptor subfamily 2, group F, member 6	protein-coding	4.5	6.0	2.0	4.5	0.0	5.5
Merged-chr3-61366442-2	chr3	61365942	61366942	+	661.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028712, exon 1 of 1)	3' UTR (NM_028712, exon 1 of 1)	1935.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8863930-3	chr4	8863444	8864444	+	661.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001277149, exon 36 of 38)	exon (NM_001277149, exon 36 of 38)	112620.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	6.0	5.5	1.0	6.5	3.0	2.5
Merged-chr14-21847179-1	chr14	21846679	21847679	+	661.0	f1_balb.idr	promoter-TSS (NM_176925)	promoter-TSS (NM_176925)	-399.0	NM_176925	319486.0	Mm.390671	NM_176925	ENSMUSG00000090564	A430057M04Rik	-	RIKEN cDNA A430057M04 gene	protein-coding	0.0	0.0	1.5	0.0	5.0	4.0
Merged-chr8-22713200-3	chr8	22712721	22713721	+	660.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6638.0	NM_001159774	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31664353-3	chr14	31663858	31664858	+	660.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025295, intron 2 of 3)	LTR37B|LTR|ERV1	23301.0	NM_025295	26363.0	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82145340-2	chr15	82144840	82145840	+	660.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1929.0	NM_033218	20788.0	Mm.38016	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155673777-2	chr2	155673277	155674277	+	660.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_019828, intron 1 of 18)	B3|SINE|B2	18607.0	NM_019828	56407.0	Mm.234944	NM_019828	ENSMUSG00000038324	Trpc4ap	4833429F06Rik|D2Ertd113e|Trrp4ap|mFLJ00177|truss	transient receptor potential cation channel, subfamily C, member 4 associated protein	protein-coding	4.0	9.0	3.0	2.5	17.5	5.5
Merged-chr9-95859930-2	chr9	95859467	95860467	+	660.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019864, intron 1 of 46)	B2_Mm2|SINE|B2	-2085.0	NM_001271569	73410.0	Mm.443314	NM_028533	ENSMUSG00000096655	1700065D16Rik	-	RIKEN cDNA 1700065D16 gene	protein-coding	4.0	0.0	2.0	3.0	0.0	1.0
Merged-chr7-16613809-2	chr7	16613309	16614309	+	660.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_136928)	promoter-TSS (NR_136928)	-15.0	NR_136928	102634559.0	Mm.421602	NR_136928	ENSMUSG00000100583	Gm29443	-	predicted gene 29443	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76311880-2	chr15	76311380	76312380	+	660.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-4635.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52217629-2	chr6	52217129	52218129	+	660.833313	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010455, exon 1 of 2)	5' UTR (NM_010455, exon 1 of 2)	944.0	NM_010455	15404.0	Mm.294826	NM_010455	ENSMUSG00000038236	Hoxa7	AV118143|Hox-1.1|M6	homeobox A7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20257181-3	chr14	20256701	20257701	+	660.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11961.0	NM_029006	74571.0	Mm.105571	NM_029006	ENSMUSG00000023387	Kcnk16	4731413G05Rik|TALK-1|TALK1	potassium channel, subfamily K, member 16	protein-coding	0.0	2.0	0.0	0.0	2.0	0.0
Merged-chr8-25615972-3	chr8	25615484	25616484	+	660.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001735, intron 1 of 9)	B3|SINE|B2	13700.0	NM_001308482	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-48762084-2	chr2	48761584	48762584	+	660.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52025.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104414990-3	chr9	104414512	104415512	+	660.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11101.0	NR_035516	100316725.0		NR_035516	ENSMUSG00000089406	Mir2136	mmu-mir-2136	microRNA 2136	ncRNA	3.0	6.5	6.5	12.5	6.0	0.5
Merged-chr11-8955941-2	chr11	8955424	8956424	+	660.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55267.0	NM_001303610	15574.0	Mm.42201	NM_008316	ENSMUSG00000020413	Hus1	-	HUS1 checkpoint clamp component	protein-coding	0.0	1.0	2.0	0.0	0.0	0.5
Merged-chr10-30710380-4	chr10	30709883	30710883	+	660.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 3 of 14)	intron (NM_001358842, intron 3 of 14)	-54516.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	11.5	0.0	6.0	0.0	0.0	1.0
Merged-chr6-91186651-2	chr6	91186151	91187151	+	660.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26113.0	NM_001081437	14115.0	Mm.249146	NM_007992	ENSMUSG00000064080	Fbln2	5730577E14Rik|FIBL-2	fibulin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50315709-2	chr16	50315209	50316209	+	660.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 3 of 16)	intron (NM_027444, intron 3 of 16)	116680.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55385993-2	chr12	55385493	55386493	+	660.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310583, intron 1 of 6)	intron (NM_001310583, intron 1 of 6)	1771.0	NM_001310583	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102062008-2	chr5	102061508	102062508	+	660.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	7913.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	13.5	16.5	25.5	18.0	36.5	29.0
Merged-chr10-98941059-3	chr10	98940538	98941538	+	660.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	25886.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-55054231-3	chr6	55053763	55054763	+	660.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_180678, intron 6 of 16)	intron (NM_180678, intron 6 of 16)	16262.0	NM_180678	353172.0	Mm.250004	NM_180678	ENSMUSG00000029777	Gars	GENA202|Gena201|Nmf249|Sgrp23	glycyl-tRNA synthetase	protein-coding	8.0	18.5	18.0	1.0	1.5	1.5
Merged-chr1-85698351-3	chr1	85697844	85698844	+	660.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013673, intron 14 of 19)	intron (NM_013673, intron 14 of 19)	38262.0	NM_177055	319997.0	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115511762-3	chr6	115511291	115512291	+	660.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32913.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33075192-3	chr16	33074690	33075690	+	660.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172823, intron 6 of 16)	MTEb|LTR|ERVL-MaLR	12669.0	NM_172823	239833.0	Mm.131951	NM_172823	ENSMUSG00000022802	Lmln	5330415H22Rik|AI465495	leishmanolysin-like (metallopeptidase M8 family)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-91183356-2	chr10	91182856	91183856	+	660.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-11737.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163417787-2	chr2	163417287	163418287	+	660.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_025699, intron 1 of 3)	RSINE1|SINE|B4	1683.0	NM_025699	66680.0	Mm.25119	NM_025699	ENSMUSG00000035399	Oser1	3230401D17Rik|AI256769|Perit1	oxidative stress responsive serine rich 1	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr17-45745616-2	chr17	45745116	45746116	+	660.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 1 of 4)	intron (NR_152153, intron 1 of 4)	11110.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	0.0	14.0	1.0	0.0	0.5	0.0
Merged-chr14-34497598-2	chr14	34497098	34498098	+	660.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009758, intron 1 of 12)	intron (NM_009758, intron 1 of 12)	4948.0	NM_009758	12166.0	Mm.237825	NM_009758	ENSMUSG00000021796	Bmpr1a	1110037I22Rik|ALK-3|ALK3|AU045487|BMPR-1A|BMPR-IA|Bmpr|SKR5	bone morphogenetic protein receptor, type 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-117873633-2	chr6	117873133	117874133	+	660.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360938)	TTS (NM_001360938)	10752.0	NM_001001792	22685.0	Mm.249661	NM_008616	ENSMUSG00000042097	Zfp239	Mok-2|Mok2|Znf239	zinc finger protein 239	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46737050-2	chr8	46736550	46737550	+	660.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_045750, intron 1 of 2)	intron (NR_045750, intron 1 of 2)	2465.0	NR_045750	100503498.0	Mm.187358	NR_045750	ENSMUSG00000097534	Gm16675	-	predicted gene, 16675	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70835649-2	chr9	70835149	70836149	+	660.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	99159.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78569674-2	chr15	78569174	78570174	+	660.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009008, intron 2 of 6)	intron (NM_009008, intron 2 of 6)	3109.0	NM_009008	19354.0	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	Rac family small GTPase 2	protein-coding	0.0	2.0	2.0	0.0	3.5	1.0
Merged-chr1-46078110-3	chr1	46077595	46078595	+	660.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160386, intron 2 of 65)	MTD|LTR|ERVL-MaLR	11357.0	NM_001160386	227058.0	Mm.296880	NM_001160386	ENSMUSG00000041144	Dnah7b	Dnahc7b|Gm107	dynein, axonemal, heavy chain 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136605511-3	chr1	136605009	136606009	+	660.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19392.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-149072737-3	chr3	149072223	149073223	+	660.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118088.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79757233-3	chr2	79756720	79757720	+	660.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290743, intron 3 of 4)	ORR1A4|LTR|ERVL-MaLR	49440.0	NM_001290743	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	3.5	0.0	2.0	0.0	0.0	2.0
Merged-chr15-8167787-3	chr15	8167243	8168243	+	660.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV16_I-int|LTR|ERVK	-1363.0	NM_001162906	73692.0	Mm.164436	NM_001162906	ENSMUSG00000039801	2410089E03Rik	4732468D17Rik|Hug|Jbts17|b2b012Clo	RIKEN cDNA 2410089E03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-84462967-2	chr11	84462467	84463467	+	660.525024	f1_balb.idr|f1_c57bl6.idr	intron (NM_019816, intron 9 of 12)	ORR1D2|LTR|ERVL-MaLR	50534.0	NM_019816	56321.0	Mm.257482	NM_019816	ENSMUSG00000018697	Aatf	4933415H02Rik|5830465M17Rik|Che-1|Trb	apoptosis antagonizing transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120348794-2	chr2	120348294	120349294	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_147153, intron 2 of 25)	B1_Mur2|SINE|Alu	4339.0	NR_027618	269338.0	Mm.246131	NM_147153	ENSMUSG00000027291	Vps39	A230065P22Rik|AW743070|Vam6|Vam6P|mVam6	VPS39 HOPS complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-102519641-2	chr6	102519141	102520141	+	660.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-54974.0	NM_008779	18488.0	Mm.435479	NM_008779	ENSMUSG00000030075	Cntn3	Pang	contactin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47228541-2	chr17	47228041	47229041	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 3 of 19)	intron (NM_001097623, intron 3 of 19)	-1689.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70964916-2	chr12	70964416	70965416	+	660.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019785)	TTS (NM_019785)	-9707.0	NM_001310595	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75599237-4	chr18	75598800	75599800	+	660.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 6 of 11)	intron (NM_201354, intron 6 of 11)	84655.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	2.0	9.0	0.0	2.0	9.5	0.0
Merged-chr19-37530263-2	chr19	37529763	37530763	+	660.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-20155.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	0.0	2.5	6.0	2.5	0.0	4.5
Merged-chr1-132155055-2	chr1	132154555	132155555	+	660.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C2|LTR|ERVK	-15370.0	NM_008795	18557.0	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-72629987-2	chr14	72629487	72630487	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 3 of 25)	intron (NM_207636, intron 3 of 25)	80016.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	1.0	0.5	0.0	0.5	1.0	0.0
Merged-chr2-167001771-2	chr2	167001271	167002271	+	660.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19|LTR|ERVK	-5472.0	NM_001109905	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31693411-2	chr17	31692915	31693915	+	660.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15484.0	NM_001278570	12954.0	Mm.1228	NM_013501	ENSMUSG00000024041	Cryaa	Acry-1|Crya-1|Crya1|DAcry-1|lop18	crystallin, alpha A	protein-coding	0.0	1.5	0.0	2.5	0.0	0.5
Merged-chr11-106890237-2	chr11	106889737	106890737	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025481, intron 1 of 18)	intron (NM_025481, intron 1 of 18)	30478.0	NM_025481	66313.0	Mm.340955	NM_025481	ENSMUSG00000018363	Smurf2	2810411E22Rik|AI558114|AI649275	SMAD specific E3 ubiquitin protein ligase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58011971-2	chr11	58011471	58012471	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028451, intron 1 of 18)	intron (NM_028451, intron 1 of 18)	2907.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	0.0	3.0	4.0	0.5	9.5	3.0
Merged-chr7-45887615-2	chr7	45887115	45888115	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021482, intron 3 of 4)	intron (NM_021482, intron 3 of 4)	9096.0	NM_001291064	58867.0	Mm.214217	NM_021482	ENSMUSG00000040231	Syngr4	1700016O14Rik	synaptogyrin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124023207-2	chr5	124022699	124023699	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	9061.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	36.0	132.0	95.5	22.5	82.5	60.0
Merged-chr2-163608761-2	chr2	163608261	163609261	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_131225, intron 2 of 3)	B1_Mur2|SINE|Alu	1549.0	NM_001305803	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-18288523-2	chr18	18288023	18289023	+	660.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_I-int|LTR|ERV1	-707533.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128452106-2	chr8	128451588	128452588	+	660.5	f0_balb.idr|f1_balb.idr	intron (NM_001358959, intron 6 of 16)	intron (NM_001358959, intron 6 of 16)	92847.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	3.0	17.5	5.5	13.0	4.5	10.0
Merged-chr3-116300867-2	chr3	116300367	116301367	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001173553, intron 9 of 13)	ORR1D1-int|LTR|ERVL-MaLR	-47383.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133346327-4	chr4	133345755	133346755	+	660.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6940.0	NM_199306	230796.0	Mm.226576	NM_199306	ENSMUSG00000037622	Wdtc1	Gm695|adipose|adp	WD and tetratricopeptide repeats 1	protein-coding	9.5	27.5	18.5	21.0	6.5	4.5
Merged-chr5-101924574-2	chr5	101924074	101925074	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 18 of 66)	intron (NM_172882, intron 18 of 66)	145347.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	1.0	0.5	1.0
Merged-chr7-41278452-2	chr7	41277952	41278952	+	660.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-5875.0	NM_001033782	434172.0	Mm.247214	NM_001033782	ENSMUSG00000072259	Gm5592	EG434172	predicted gene 5592	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78190101-2	chr11	78189601	78190601	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159482, intron 3 of 10)	intron (NM_001159482, intron 3 of 10)	1353.0	NM_033475	19376.0	Mm.275864	NM_033475	ENSMUSG00000002059	Rab34	AI326479|Narr|Rah|Rah1	RAB34, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155249742-2	chr2	155249241	155250241	+	660.5	f0_balb.idr|f1_balb.idr	intron (NR_111890, intron 3 of 3)	intron (NR_111890, intron 3 of 3)	13133.0	NM_001291108	67068.0	Mm.23693	NM_025947	ENSMUSG00000047459	Dynlrb1	2010012N15Rik|2010320M17Rik|9430076K19Rik|AV124457|DNLC2A|Dncl2a|km23-1	dynein light chain roadblock-type 1	protein-coding	9.0	2.5	6.5	7.0	10.5	2.5
Merged-chr2-148687031-2	chr2	148686531	148687531	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355689, intron 3 of 5)	intron (NM_001355689, intron 3 of 5)	5911.0	NM_028986	74533.0	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-18469286-2	chr6	18468786	18469786	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_149735, intron 2 of 22)	intron (NR_149735, intron 2 of 22)	45583.0	NM_080285	30785.0	Mm.224189	NM_080285	ENSMUSG00000000416	Cttnbp2	3010022N24Rik|4732477G22Rik|6430526E05|9130022E09Rik|AU040881|Cortbp2|ORF4|mKIAA1758	cortactin binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71279758-2	chr8	71279258	71280258	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 1 of 39)	PB1D10|SINE|Alu	7044.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22856919-2	chr16	22856419	22857419	+	660.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026400)	promoter-TSS (NM_026400)	750.0	NM_001081368	70573.0	Mm.68291	NM_001081368	ENSMUSG00000004462	Tbccd1	5730478M09Rik|AU015083|BB165076	TBCC domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-42256527-2	chr7	42256027	42257027	+	660.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3526.0	NM_001105058	637873.0	Mm.469899	NM_001105058	ENSMUSG00000090967	Vmn2r61	Casr-rs2|EG637873|Gprc2a-rs2	vomeronasal 2, receptor 61	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47595229-2	chr17	47594729	47595729	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 4 of 6)	intron (NM_001081635, intron 4 of 6)	1762.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18891916-2	chr2	18891416	18892416	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 3 of 9)	intron (NM_008845, intron 3 of 9)	-90098.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22896327-2	chr8	22895827	22896827	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081149, intron 3 of 17)	intron (NM_001081149, intron 3 of 17)	36788.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40207284-2	chr4	40206784	40207784	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172689, intron 17 of 17)	intron (NM_172689, intron 17 of 17)	32541.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134933133-2	chr6	134932633	134933633	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_037956, intron 1 of 1)	intron (NR_037956, intron 1 of 1)	4041.0	NR_037955	381822.0	Mm.5935	NR_037955	ENSMUSG00000098318	Lockd	1190002F15Rik|AI120476|Droc	lncRNA downstream of Cdkn1b	ncRNA	2.5	9.0	9.0	8.5	19.5	21.5
Merged-chr14-31657018-2	chr14	31656532	31657532	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025295, intron 1 of 3)	intron (NM_025295, intron 1 of 3)	15975.0	NM_025295	26363.0	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76704084-2	chr15	76703584	76704584	+	660.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027122, exon 5 of 5)	3' UTR (NM_027122, exon 5 of 5)	2542.0	NM_027122	69572.0	Mm.34920	NM_027122	ENSMUSG00000019080	Mfsd3	2310010G13Rik	major facilitator superfamily domain containing 3	protein-coding	0.0	1.0	0.0	0.0	1.5	0.0
Merged-chr18-69365359-4	chr18	69364850	69365850	+	660.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 3 of 19)	(T)n|Simple_repeat|Simple_repeat	19190.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.0	0.0	1.0	0.5	1.0	4.5
Merged-chr10-127524710-2	chr10	127524210	127525210	+	660.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_183297)	TTS (NM_183297)	-2266.0	NM_028230	108037.0	Mm.29890	NM_028230	ENSMUSG00000025403	Shmt2	2700043D08Rik|AA408223|AA986903|SHMT	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27232289-2	chr7	27231789	27232789	+	660.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133770)	promoter-TSS (NM_133770)	-724.0	NM_133770	76889.0	Mm.124728	NM_133770	ENSMUSG00000003762	Coq8b	0610012P18Rik|Adck4	coenzyme Q8B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90560487-2	chr2	90559987	90560987	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	20160.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	2.5	23.5	10.5	2.0	3.0	6.5
Merged-chr19-14595597-2	chr19	14595097	14596097	+	660.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001302950, exon 3 of 19)	exon (NM_001302950, exon 3 of 19)	1616.0	NM_001302951	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-67839548-2	chr9	67839057	67840057	+	660.5	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_177184)	promoter-TSS (NM_177184)	-839.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	2.5	11.5	13.5	18.0	32.5	20.5
Merged-chr7-3448945-2	chr7	3448447	3449447	+	660.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24285.0	NM_133183	54378.0	Mm.424047	NM_133183	ENSMUSG00000078815	Cacng6	2310033H20Rik	calcium channel, voltage-dependent, gamma subunit 6	protein-coding	0.0	1.0	1.0	0.0	0.0	0.0
Merged-chr4-45889766-3	chr4	45889322	45890322	+	660.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198660)	promoter-TSS (NM_198660)	-481.0	NM_198660	381522.0	Mm.54220	NM_198660	ENSMUSG00000035539	Ccdc180	E230008N13Rik|Gm1025	coiled-coil domain containing 180	protein-coding	11.0	7.5	12.0	8.0	26.0	16.0
Merged-chr10-81197647-2	chr10	81197147	81198147	+	660.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027120)	TTS (NM_027120)	2956.0	NR_015477	69678.0	Mm.81562	NR_015477		Atcayos	2310050B05Rik	ataxia, cerebellar, Cayman type, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24159517-2	chr10	24159010	24160010	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016797, intron 2 of 9)	intron (NM_016797, intron 2 of 9)	10193.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	1.5	5.0	7.5	1.0	8.0	11.0
Merged-chr2-26091556-2	chr2	26091056	26092056	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026495, intron 1 of 5)	CpG	840.0	NM_001037098	67991.0	Mm.131074	NM_026495	ENSMUSG00000026932	Nacc2	0610020I02Rik|AI448087|Btbd14a|C030048H19Rik	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111175604-2	chr8	111175104	111176104	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 12 of 25)	B4|SINE|B4	-30106.0	NR_040364	434350.0	Mm.442061	NR_040363		9430091E24Rik	-	RIKEN cDNA 9430091E24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41347541-2	chr4	41347041	41348041	+	660.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1455.0	NM_001355509	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62867519-2	chr11	62867019	62868019	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033669, intron 8 of 12)	intron (NM_001033669, intron 8 of 12)	-11936.0	NM_001356520	67510.0	Mm.9806	NM_026210	ENSMUSG00000014177	Tvp23b	1810036I24Rik|Fam18b|Fam18b1	trans-golgi network vesicle protein 23B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118598446-2	chr9	118597946	118598946	+	660.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-8263.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80293851-2	chr17	80293351	80294351	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_194269, intron 2 of 4)	Lx3A|LINE|L1	-3375.0	NM_001163759	106794.0	Mm.12412	NM_198942	ENSMUSG00000035051	Dhx57	AW494914	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-143072742-2	chr6	143072242	143073242	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362115, intron 7 of 26)	intron (NM_001362115, intron 7 of 26)	27410.0	NM_001362118	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4677184-2	chr16	4676684	4677684	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030205, intron 1 of 27)	B4A|SINE|B4	2536.0	NM_030205	78885.0	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-43903628-2	chr10	43903128	43904128	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152603, intron 1 of 7)	intron (NR_152603, intron 1 of 7)	1821.0	NM_130892	170728.0	Mm.390253	NM_130892	ENSMUSG00000019864	Rtn4ip1	D10Ertd690e|NIMP	reticulon 4 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127525483-2	chr10	127524983	127525983	+	660.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_183297)	TTS (NM_183297)	-3039.0	NM_028230	108037.0	Mm.29890	NM_028230	ENSMUSG00000025403	Shmt2	2700043D08Rik|AA408223|AA986903|SHMT	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191445591-3	chr1	191445124	191446124	+	660.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151615, intron 2 of 5)	ORR1D2|LTR|ERVL-MaLR	19424.0	NR_151615	102634668.0		NR_151615		Gm32200	-	predicted gene, 32200	ncRNA	0.0	0.0	0.0	0.5	2.0	0.0
Merged-chr5-102059916-2	chr5	102059416	102060416	+	660.43335	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	ID_B1|SINE|B4	10005.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21441034-4	chr13	21440473	21441473	+	660.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162919)	promoter-TSS (NM_001162919)	80.0	NM_001012311	319207.0	Mm.434384	NM_001012311	ENSMUSG00000055313	Pgbd1	4921509E05Rik	piggyBac transposable element derived 1	protein-coding	2.0	0.5	1.5	0.5	1.0	2.5
Merged-chr6-127155753-2	chr6	127155253	127156253	+	660.400024	f1_balb.idr|f1_c57bl6.idr	intron (NR_040275, intron 1 of 1)	intron (NR_040275, intron 1 of 1)	-4705.0	NM_009829	12444.0	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21159858-3	chr10	21159359	21160359	+	660.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198914, intron 1 of 15)	CpG	1125.0	NM_001198914	17863.0	Mm.52109	NM_010848	ENSMUSG00000019982	Myb	AI550390|M16449|c-myb	myeloblastosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25058891-4	chr10	25058389	25059389	+	660.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-131419.0	NM_007482	11846.0	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	0.0	0.0	0.0	4.0	1.5	2.5
Merged-chr9-57760628-2	chr9	57760128	57761128	+	660.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007713, intron 3 of 12)	intron (NM_007713, intron 3 of 12)	5232.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9188782-2	chr13	9188289	9189289	+	660.333374	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-87736.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-67573706-2	chr3	67573206	67574206	+	660.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-9062.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9791250-2	chr3	9790750	9791750	+	660.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195031, intron 1 of 8)	L1_Mur3|LINE|L1	42429.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118473128-2	chr11	118472628	118473628	+	660.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21B|LTR|ERV1	-3704.0	NM_172573	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-38042516-2	chr19	38042013	38043013	+	660.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 1 of 53)	intron (NM_001302140, intron 1 of 53)	1064.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	6.5	48.0	25.0	21.5	29.5	29.5
Merged-chr9-21037491-2	chr9	21036991	21037991	+	660.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_008319, intron 9 of 10)	intron (NM_008319, intron 9 of 10)	-5163.0	NR_035438	100316681.0		NR_035438	ENSMUSG00000084663	Mir1900	Mirn1900|mmu-mir-1900	microRNA 1900	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-15586785-3	chr3	15586279	15587279	+	660.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-11714.0	NM_001173460	668101.0	Mm.423523	NM_001173460	ENSMUSG00000095028	Sirpb1b	-	signal-regulatory protein beta 1B	protein-coding	0.5	4.0	5.0	2.0	2.5	0.0
Merged-chr12-52119864-2	chr12	52119364	52120364	+	660.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_029760, intron 3 of 10)	MLT1G|LTR|ERVL-MaLR	22118.0	NM_029760	76826.0	Mm.244781	NM_029760	ENSMUSG00000035142	Nubpl	2410170E07Rik	nucleotide binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	2.5
Merged-chr11-44453713-2	chr11	44453207	44454207	+	660.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_024475)	TTS (NM_024475)	16841.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	6.5	9.0	5.5	0.0	7.0	5.0
Merged-chr15-65824989-2	chr15	65824489	65825489	+	660.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_133766, intron 5 of 22)	intron (NM_133766, intron 5 of 22)	37969.0	NM_001356582	76740.0	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	0.0	4.0	0.0	2.0	2.0	0.0
Merged-chr13-41491868-2	chr13	41491368	41492368	+	660.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4508.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142960351-3	chr5	142959860	142960860	+	660.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007984)	promoter-TSS (NM_007984)	5.0	NM_007984	14086.0	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46070328-3	chr8	46069827	46070827	+	660.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207213, intron 5 of 17)	B1_Mus2|SINE|Alu	53819.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-44734708-3	chr17	44734187	44735187	+	660.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073392, intron 2 of 7)	CpG	1489.0	NR_073425	12393.0	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36597084-2	chr1	36596584	36597584	+	660.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 10 of 14)	MTD|LTR|ERVL-MaLR	-3752.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-26104884-3	chr6	26104380	26105380	+	660.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	173454.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45438111-2	chr7	45437611	45438611	+	660.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_030678, exon 3 of 16)	exon (NM_030678, exon 3 of 16)	3272.0	NM_030678	14936.0	Mm.275654	NM_030678	ENSMUSG00000003865	Gys1	Gys3|MGS	glycogen synthase 1, muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-150373058-4	chr1	150372548	150373548	+	660.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357579, intron 11 of 13)	intron (NM_001357579, intron 11 of 13)	-19790.0	NM_133780	108989.0	Mm.174256	NM_133780	ENSMUSG00000006005	Tpr	2610029M07Rik|C77892	translocated promoter region, nuclear basket protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-30468794-4	chr6	30468310	30469310	+	660.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7825.0	NR_131049	69337.0	Mm.396168	NR_131049	ENSMUSG00000085470	1700012C14Rik	-	RIKEN cDNA 1700012C14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-58535720-2	chr18	58535221	58536221	+	660.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20519.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	20.0	46.5	52.5	57.5	86.5	61.5
Merged-chr19-55837543-2	chr19	55837043	55838043	+	660.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-57778.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-105622332-3	chr14	105621824	105622824	+	660.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	1446.0	NR_105814	102465207.0		NR_105814	ENSMUSG00000098780	Mir6390	Gm27562|mmu-mir-6390	microRNA 6390	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135675046-2	chr5	135674546	135675546	+	660.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14099.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	0.0	1.0	1.5	0.0	12.0	1.0
Merged-chr2-25115469-3	chr2	25114969	25115969	+	660.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_T|LINE|L1	-20264.0	NM_172204	241275.0	Mm.218774	NM_172204	ENSMUSG00000036805	Noxa1	NY-CO-31|SDCCAG31	NADPH oxidase activator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71025640-2	chr2	71025140	71026140	+	660.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 1 of 9)	intron (NM_145524, intron 1 of 9)	-7266.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59667947-4	chr13	59667452	59668452	+	660.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035122, intron 1 of 9)	MTD|LTR|ERVL-MaLR	7832.0	NM_001035122	105348.0	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-24595445-6	chr8	24594954	24595954	+	660.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001293690, exon 1 of 10)	5' UTR (NM_001293690, exon 1 of 10)	212.0	NM_001293690	15930.0	Mm.392	NM_008324	ENSMUSG00000031551	Ido1	Ido|Indo	indoleamine 2,3-dioxygenase 1	protein-coding	0.0	0.0	1.0	0.0	2.5	1.0
Merged-chr2-172468078-2	chr2	172467578	172468578	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025542, intron 8 of 8)	intron (NM_025542, intron 8 of 8)	-4476.0	NM_029608	76426.0	Mm.46148	NM_029608	ENSMUSG00000027505	Fam209	1700029J11Rik	family with sequence similarity 209	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-75442711-1	chr9	75442211	75443211	+	660.0	f1_balb.idr	intron (NM_001039522, intron 1 of 11)	intron (NM_001039522, intron 1 of 11)	1187.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	5.5	14.5	9.0	5.0	3.0	7.5
Merged-chr15-31456754-2	chr15	31456254	31457254	+	660.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172606, exon 26 of 26)	3' UTR (NM_172606, exon 26 of 26)	-3065.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155696981-1	chr2	155696481	155697481	+	660.0	f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-4597.0	NM_001163452	56407.0	Mm.234944	NM_019828	ENSMUSG00000038324	Trpc4ap	4833429F06Rik|D2Ertd113e|Trrp4ap|mFLJ00177|truss	transient receptor potential cation channel, subfamily C, member 4 associated protein	protein-coding	21.0	32.0	14.5	6.5	50.0	8.0
Merged-chr7-114193129-2	chr7	114192629	114193629	+	660.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	61551.0	NM_033370	70349.0	Mm.277024	NM_033370	ENSMUSG00000030754	Copb1	2610019B04Rik	coatomer protein complex, subunit beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38280548-2	chr15	38280048	38281048	+	660.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19352.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-132168669-1	chr3	132168169	132169169	+	660.0	f0_balb.idr	intron (NM_020265, intron 1 of 3)	intron (NM_020265, intron 1 of 3)	83377.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125120207-1	chr6	125119707	125120707	+	660.0	f0_balb.idr	exon (NM_145979, exon 26 of 39)	exon (NM_145979, exon 26 of 39)	-11676.0	NM_138747	110109.0	Mm.29203	NM_138747	ENSMUSG00000038279	Nop2	120kDa|A530002O17|Nol1	NOP2 nucleolar protein	protein-coding	23.5	8.0	3.5	10.0	2.5	4.0
Merged-chr1-135742671-2	chr1	135742171	135743171	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153810, intron 2 of 3)	intron (NR_153810, intron 2 of 3)	13504.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-42302556-1	chr6	42302056	42303056	+	660.0	f0_balb.idr	intron (NM_013491, intron 12 of 22)	intron (NM_013491, intron 12 of 22)	15871.0	NM_013491	12723.0	Mm.386757	NM_013491	ENSMUSG00000029862	Clcn1	Clc-1|Clc1|SMCC1|adr|mto|myotonia|nmf355	chloride channel, voltage-sensitive 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14107883-2	chr2	14107383	14108383	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011484, intron 2 of 13)	intron (NM_011484, intron 2 of 13)	33783.0	NM_011484	20844.0	Mm.273174	NM_011484	ENSMUSG00000026718	Stam	STAM1	signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29663570-2	chr2	29663070	29664070	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	43850.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	2.5	7.0	9.5	2.5	7.0	10.0
Merged-chr1-187586780-1	chr1	187586280	187587280	+	660.0	f0_c57.idr	Intergenic	Intergenic	-22226.0	NM_001243792	26381.0	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-15228356-2	chr13	15227856	15228856	+	660.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-235367.0	NM_008130	14634.0	Mm.5098	NM_008130	ENSMUSG00000021318	Gli3	AI854843|AU023367|Bph|GLI3-190|GLI3FL|Pdn|Xt|add	GLI-Kruppel family member GLI3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79213825-2	chr15	79213293	79214293	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_029470, intron 4 of 4)	MIRc|SINE|MIR	-15380.0	NM_008837	18693.0	Mm.259464	NM_008837	ENSMUSG00000068206	Pick1	Prkcabp	protein interacting with C kinase 1	protein-coding	7.5	3.0	0.0	0.0	0.0	0.5
Merged-chr5-102064661-2	chr5	102064161	102065161	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	5260.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-100017399-2	chr14	100016899	100017899	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010636, intron 3 of 6)	intron (NM_010636, intron 3 of 6)	132397.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21158968-2	chr10	21158468	21159468	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198914, intron 1 of 15)	intron (NM_001198914, intron 1 of 15)	2016.0	NM_001198914	17863.0	Mm.52109	NM_010848	ENSMUSG00000019982	Myb	AI550390|M16449|c-myb	myeloblastosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112646026-2	chr12	112645526	112646526	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161737, intron 1 of 2)	intron (NM_001161737, intron 1 of 2)	1198.0	NM_013929	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-70482115-1	chr18	70481615	70482615	+	660.0	f0_balb.idr	intron (NM_001289650, intron 5 of 8)	intron (NM_001289650, intron 5 of 8)	9449.0	NM_001289650	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	1.0	10.0	5.0	6.5	2.5	8.5
Merged-chr13-91464767-1	chr13	91464267	91465267	+	660.0	f0_balb.idr	intron (NM_001360776, intron 1 of 15)	intron (NM_001360776, intron 1 of 15)	3670.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	0.5	0.5	0.5	0.0	1.5	1.0
Merged-chr11-117794293-2	chr11	117793793	117794793	+	660.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3367.0	NM_029964	77727.0	Mm.159981	NM_029964	ENSMUSG00000025573	6030468B19Rik	Il-40	RIKEN cDNA 6030468B19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-58527194-2	chr3	58526694	58527694	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005509, intron 1 of 13)	B3A|SINE|B2	-1310.0	NM_030685	28146.0	Mm.29702	NM_030685	ENSMUSG00000027808	Serp1	D3Ucla1|Ramp4	stress-associated endoplasmic reticulum protein 1	protein-coding	3.5	1.5	0.0	0.0	0.5	3.0
Merged-chr2-155728116-1	chr2	155727616	155728616	+	660.0	f1_c57bl6.idr	intron (NM_145537, intron 2 of 10)	intron (NM_145537, intron 2 of 10)	1359.0	NM_145537	108687.0	Mm.273706	NM_145537	ENSMUSG00000038312	Edem2	9530090G24Rik|AI327354	ER degradation enhancer, mannosidase alpha-like 2	protein-coding	0.5	0.0	5.5	5.0	2.5	0.0
Merged-chr10-112925725-2	chr10	112925225	112926225	+	660.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033474, exon 1 of 1)	3' UTR (NM_001033474, exon 1 of 1)	3301.0	NM_001033474	382423.0	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132	ataxin 7-like 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152586754-2	chr1	152586254	152587254	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	38463.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-77289388-2	chr2	77288888	77289888	+	660.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8796.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118200532-4	chr11	118200030	118201030	+	660.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	L1MB3|LINE|L1	12212.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123260117-2	chr5	123259617	123260617	+	660.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	31927.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	1.0	0.0	0.0	0.0	7.5	0.0
Merged-chr14-20837865-2	chr14	20837365	20838365	+	660.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008873, exon 4 of 11)	exon (NM_008873, exon 4 of 11)	1203.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	5.5	15.5	7.5	4.0	14.5	7.0
Merged-chr17-84194471-1	chr17	84193971	84194971	+	660.0	f0_balb.idr	intron (NM_183021, intron 36 of 37)	intron (NM_183021, intron 36 of 37)	-6524.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119579129-2	chr9	119578629	119579629	+	660.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021544)	promoter-TSS (NM_021544)	-113.0	NM_021544	20271.0	Mm.103584	NM_021544	ENSMUSG00000032511	Scn5a	Nav1.5|Nav1.5c|SkM1|SkM2|mH1	sodium channel, voltage-gated, type V, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81153714-2	chr10	81153214	81154214	+	660.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_021501)	TTS (NM_021501)	14006.0	NM_021501	59004.0	Mm.34428	NM_021501	ENSMUSG00000004934	Pias4	PIASY|Pias-gamma|Piasg	protein inhibitor of activated STAT 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30307724-2	chr16	30307224	30308224	+	660.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008148)	TTS (NM_008148)	3057.0	NM_008148	14729.0	Mm.3519	NM_008148	ENSMUSG00000047953	Gp5	GPV	glycoprotein 5 (platelet)	protein-coding	0.0	0.0	0.0	5.5	0.0	0.0
Merged-chr1-195017262-2	chr1	195016762	195017762	+	660.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015566)	promoter-TSS (NR_015566)	-137.0	NR_015566	320977.0	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53799210-2	chr11	53798710	53799710	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	MTE2b|LTR|ERVL-MaLR	28737.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-60945142-1	chr19	60944642	60945642	+	660.0	f1_c57bl6.idr	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	55393.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	8.0	14.0	23.5	1.0	4.0	8.5
Merged-chr15-77928287-2	chr15	77927787	77928787	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019913, intron 1 of 3)	intron (NM_019913, intron 1 of 3)	707.0	NM_019913	56551.0	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-4892277-2	chr3	4891777	4892777	+	660.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR9F|LTR|ERVK	93569.0	NR_045272	100503859.0	Mm.75172	NR_045272	ENSMUSG00000098659	1110015O18Rik	-	RIKEN cDNA 1110015O18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167642848-2	chr2	167642348	167643348	+	660.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145538)	TTS (NM_145538)	-10843.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59883271-2	chr10	59882771	59883771	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019965, intron 1 of 8)	intron (NM_019965, intron 1 of 8)	3680.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-71658173-2	chr5	71657673	71658673	+	660.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010251, exon 1 of 9)	5' UTR (NM_010251, exon 1 of 9)	135.0	NM_001359045	14397.0	Mm.248731	NM_010251	ENSMUSG00000029211	Gabra4	Gabra-4	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95525101-1	chr13	95524601	95525601	+	660.0	f1_c57bl6.idr	exon (NM_007974, exon 1 of 2)	exon (NM_007974, exon 1 of 2)	139.0	NM_007974	14063.0	Mm.1614	NM_007974	ENSMUSG00000021678	F2rl1	Gpcr11|PAR-2|Par2	coagulation factor II (thrombin) receptor-like 1	protein-coding	0.0	4.5	3.5	0.0	0.5	0.5
Merged-chr7-99072743-1	chr7	99072243	99073243	+	660.0	f1_c57bl6.idr	intron (NM_178635, intron 5 of 14)	intron (NM_178635, intron 5 of 14)	68401.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	3.0	6.0	10.0	3.5	3.5	5.5
Merged-chr13-92702767-1	chr13	92702267	92703267	+	660.0	f0_balb.idr	intron (NM_172588, intron 9 of 11)	intron (NM_172588, intron 9 of 11)	91629.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11342228-2	chr16	11341728	11342728	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 1 of 20)	intron (NM_028964, intron 1 of 20)	19324.0	NM_028964	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180329197-2	chr1	180328697	180329697	+	660.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_003623, exon 1 of 1)	non-coding (NR_003623, exon 1 of 1)	-1279.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117277375-2	chr10	117276875	117277875	+	660.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_017372)	TTS (NM_017372)	4897.0	NM_017372	17105.0	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-38481160-2	chr3	38480660	38481660	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167883, intron 2 of 3)	ORR1E|LTR|ERVL-MaLR	3656.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107357901-1	chr9	107357401	107358401	+	660.0	f1_balb.idr	Intergenic	Intergenic	17261.0	NM_175486	235599.0	Mm.71039	NM_175486	ENSMUSG00000037977	6430571L13Rik	-	RIKEN cDNA 6430571L13 gene	protein-coding	4.5	1.0	1.0	4.5	0.0	0.0
Merged-chr6-113309292-2	chr6	113308792	113309792	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282128, intron 1 of 13)	intron (NM_001282128, intron 1 of 13)	2155.0	NM_001282126	78783.0	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44132606-2	chr16	44132106	44133106	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	6653.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	4.5	4.0	7.0	4.5	6.0	7.0
Merged-chr11-106254858-2	chr11	106254358	106255358	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025310, intron 3 of 20)	intron (NM_025310, intron 3 of 20)	1226.0	NM_025310	56095.0	Mm.29795	NM_025310	ENSMUSG00000020706	Ftsj3	AA537063|AU045295|C79843|D11Ertd400e|Epcs3	FtsJ RNA methyltransferase homolog 3 (E. coli)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-30886450-2	chr3	30885950	30886950	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286995, intron 2 of 2)	RMER1B|Other|Other	30500.0	NM_001286994	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43922258-2	chr7	43921758	43922758	+	660.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR53|LTR|ERVL	-11513.0	NM_174865	317652.0	Mm.389896	NM_174865	ENSMUSG00000055193	Klk15	-	kallikrein related-peptidase 15	protein-coding	4.5	12.0	4.0	4.0	4.0	7.5
Merged-chr2-124720442-1	chr2	124719942	124720942	+	660.0	f0_balb.idr	Intergenic	Intergenic	66861.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44483099-2	chr9	44482599	44483599	+	660.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357490, exon 1 of 8)	5' UTR (NM_001357490, exon 1 of 8)	274.0	NM_001357490	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5853542-2	chr19	5853042	5854042	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026169, intron 10 of 10)	(GGA)n|Simple_repeat|Simple_repeat	-8062.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-134671737-2	chr7	134671237	134672237	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033420, intron 1 of 51)	intron (NM_001033420, intron 1 of 51)	1050.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90282971-2	chr5	90282471	90283471	+	660.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_030886, exon 15 of 34)	exon (NM_030886, exon 15 of 34)	-58975.0	NM_001163456	231430.0	Mm.319697	NM_001033310	ENSMUSG00000035505	Cox18	BC038311	cytochrome c oxidase assembly protein 18	protein-coding	1.5	0.0	1.0	0.5	0.0	2.5
Merged-chr10-80592073-2	chr10	80591573	80592573	+	660.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1732.0	NM_145421	216169.0	Mm.29802	NM_145421	ENSMUSG00000003346	Abhd17a	1700013O15Rik|BC005632|D10Bwg1364e|Fam108a	abhydrolase domain containing 17A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10312195-3	chr17	10311685	10312685	+	660.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021881, intron 1 of 6)	intron (NM_021881, intron 1 of 6)	7176.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-56019551-2	chr14	56019051	56020051	+	660.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008570, exon 4 of 5)	exon (NM_008570, exon 4 of 5)	1587.0	NM_008570	17224.0	Mm.201549	NM_008570	ENSMUSG00000022227	Mcpt1	AV080368|Mcp-1	mast cell protease 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21505746-2	chr9	21505246	21506246	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 19 of 19)	intron (NM_001357721, intron 19 of 19)	4148.0	NM_001324510	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-83397567-2	chr10	83397067	83398067	+	660.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A-int|LTR|ERVK	37346.0	NM_026579	28109.0	Mm.196210	NM_026579	ENSMUSG00000020255	D10Wsu102e	AI747614|C430041I18Rik	DNA segment, Chr 10, Wayne State University 102, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6955215-2	chr19	6954715	6955715	+	660.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008874, exon 26 of 31)	exon (NM_008874, exon 26 of 31)	12653.0	NM_001285453	12015.0	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55771219-2	chr14	55770719	55771719	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080435, intron 21 of 25)	intron (NM_080435, intron 21 of 25)	5257.0	NM_008519	16995.0	Mm.20853	NM_008519	ENSMUSG00000046908	Ltb4r1	BLT1|BLTR|Ltb4r|mBLTR	leukotriene B4 receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-43254273-2	chr6	43253773	43254773	+	660.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11371.0	NM_133674	54324.0	Mm.320978	NM_133674	ENSMUSG00000033542	Arhgef5	2210412D05Rik|AA717842|AW495314|Tim1	Rho guanine nucleotide exchange factor (GEF) 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95699604-2	chr16	95699104	95700104	+	660.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2803.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55733283-2	chr14	55732783	55733783	+	660.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-11020.0	NM_001360387	56187.0	Mm.87216	NM_019519	ENSMUSG00000040472	Rabggta	gm	Rab geranylgeranyl transferase, a subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70052367-2	chr14	70051867	70052867	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-25078.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8313382-2	chr17	8312875	8313875	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134114, intron 1 of 7)	intron (NM_134114, intron 1 of 7)	-2257.0	NR_073374	75060.0	Mm.426530	NR_073374	ENSMUSG00000087478	4930506C21Rik	-	RIKEN cDNA 4930506C21 gene	ncRNA	0.0	1.0	8.5	0.0	6.5	6.0
Merged-chr7-126978274-2	chr7	126977774	126978774	+	660.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026638, exon 3 of 6)	exon (NM_026638, exon 3 of 6)	2360.0	NM_001347656	52858.0	Mm.28219	NM_026638	ENSMUSG00000030682	Cdipt	9530042F15Rik|D7Bwg0575e|Pis|Pis1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)	protein-coding	0.0	0.0	0.0	1.5	0.0	4.5
Merged-chr17-84037969-1	chr17	84037469	84038469	+	660.0	f0_balb.idr	Intergenic	Intergenic	39417.0	NR_130994	78148.0	Mm.243918	NR_130994		8430430B14Rik	-	RIKEN cDNA 8430430B14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-78879470-2	chr18	78878970	78879970	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053099, intron 3 of 5)	intron (NM_053099, intron 3 of 5)	229921.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0.0	2.5	1.5	0.0	4.0	0.5
Merged-chr2-179040478-2	chr2	179039978	179040978	+	660.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-374458.0	NM_026596	68175.0	Mm.158187	NM_026596		4930591A17Rik	-	RIKEN cDNA 4930591A17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-100380810-2	chr6	100380310	100381310	+	660.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93452.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88288219-2	chr8	88287719	88288719	+	660.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037723)	promoter-TSS (NM_001037723)	-847.0	NM_001037723	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	3.5	6.0	4.0	2.0	0.0	5.5
Merged-chr18-65216405-1	chr18	65215905	65216905	+	660.0	f1_c57bl6.idr	3' UTR (NM_031881, exon 30 of 30)	3' UTR (NM_031881, exon 30 of 30)	-32456.0	NR_029600	387231.0		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	3.5	1.0	1.0	1.5	1.5	0.0
Merged-chr14-111049931-2	chr14	111049431	111050431	+	660.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-294782.0	NM_175499	239250.0	Mm.49728	NM_175499	ENSMUSG00000045871	Slitrk6	4832410J21Rik|Sltk6	SLIT and NTRK-like family, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133013756-2	chr4	133013256	133014256	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146155, intron 2 of 6)	intron (NM_146155, intron 2 of 6)	2250.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	0.5	0.0	0.5	0.5	0.0	0.5
Merged-chr2-103729363-2	chr2	103728863	103729863	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153126, intron 21 of 28)	intron (NM_153126, intron 21 of 28)	31907.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-66699590-2	chr1	66699090	66700090	+	660.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175510)	TTS (NM_175510)	-1241.0	NM_025683	66646.0	Mm.240912	NM_025683	ENSMUSG00000026005	Rpe	2810429B02Rik|5730518J08Rik	ribulose-5-phosphate-3-epimerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110813918-1	chr5	110813418	110814418	+	660.0	f1_c57bl6.idr	Intergenic	Intergenic	-3837.0	NM_001347394	22241.0	Mm.271898	NM_009469	ENSMUSG00000029512	Ulk1	AU041434|Unc51.1|mKIAA0722	unc-51 like kinase 1	protein-coding	0.0	3.5	0.5	0.0	2.0	2.0
Merged-chr8-14678092-1	chr8	14677592	14678592	+	660.0	f0_balb.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-210444.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137285985-1	chr5	137285485	137286485	+	660.0	f1_balb.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-2269.0	NM_009599	11423.0	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	3.5	3.0	4.0	3.5	3.5	0.5
Merged-chr6-54328790-2	chr6	54328290	54329290	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030024, intron 1 of 1)	intron (NM_030024, intron 1 of 1)	1778.0	NM_030024	78004.0	Mm.41984	NM_030024	ENSMUSG00000045725	Prr15	E130201N16Rik|G90	proline rich 15	protein-coding	1.0	2.5	0.0	3.0	0.0	0.0
Merged-chr9-103182115-2	chr9	103181615	103182615	+	660.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173781, exon 8 of 8)	3' UTR (NM_173781, exon 8 of 8)	19950.0	NM_009275	20818.0	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34229213-2	chr11	34228685	34229685	+	659.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 50 of 51)	intron (NM_033374, intron 50 of 51)	-21096.0	NM_023907	14233.0	Mm.32926	NM_023907	ENSMUSG00000047861	Foxi1	5830401E05Rik|FREAC6|Fkh10|HFH-3|Hfh3	forkhead box I1	protein-coding	8.5	1.5	9.0	3.0	6.0	4.0
Merged-chr4-129134935-3	chr4	129134433	129135433	+	659.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2066.0	NM_027402	384061.0	Mm.44075	NM_027402	ENSMUSG00000001334	Fndc5	1500001L03Rik|AI836596|C87088|PeP|Pxp	fibronectin type III domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11951793-2	chr19	11951300	11952300	+	659.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-14044.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	15.0	12.5	19.5	9.5	0.5	5.0
Merged-chr15-73624024-2	chr15	73623524	73624524	+	659.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033219, intron 1 of 7)	intron (NM_001033219, intron 1 of 7)	720.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-51792716-2	chr1	51792216	51793216	+	659.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010863, intron 13 of 29)	intron (NM_010863, intron 13 of 29)	123262.0	NM_001161817	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120550887-2	chr11	120550387	120551387	+	659.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_026814, exon 1 of 3)	exon (NM_026814, exon 1 of 3)	245.0	NM_026814	68701.0	Mm.46477	NM_026814	ENSMUSG00000025129	Ppp1r27	1110033I14Rik|Dysfip1|toonin	protein phosphatase 1, regulatory subunit 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53730231-3	chr15	53729730	53730730	+	659.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177225, intron 2 of 4)	intron (NM_177225, intron 2 of 4)	-115951.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-7774144-3	chr14	7773669	7774669	+	659.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAG)n|Simple_repeat|Simple_repeat	-43788.0	NM_001081427	286940.0	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-55865871-2	chr7	55865371	55866371	+	659.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164661, intron 2 of 31)	intron (NM_001164661, intron 2 of 31)	23800.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70783065-3	chr12	70782567	70783567	+	659.783325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42447.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6302571-2	chr4	6302035	6303035	+	659.766663	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-26904.0	NM_007824	13122.0	Mm.57029	NM_007824	ENSMUSG00000028240	Cyp7a1	-	cytochrome P450, family 7, subfamily a, polypeptide 1	protein-coding	0.5	0.0	0.5	0.0	0.5	0.0
Merged-chr4-62263814-2	chr4	62263314	62264314	+	659.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-22615.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115155355-2	chr11	115154855	115155855	+	659.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_021411, intron 1 of 8)	intron (NM_021411, intron 1 of 8)	1177.0	NM_021411	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	5.0	0.0
Merged-chr5-115477618-2	chr5	115477098	115478098	+	659.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001167691)	TTS (NM_001167691)	6699.0	NM_001167691	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	0.0	0.0	1.0	0.0	0.0	0.5
Merged-chr5-101925843-2	chr5	101925343	101926343	+	659.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 18 of 66)	intron (NM_172882, intron 18 of 66)	144078.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152611559-2	chr1	152611059	152612059	+	659.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	13658.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-16185157-2	chr3	16184657	16185657	+	659.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172677, intron 2 of 5)	intron (NM_172677, intron 2 of 5)	1992.0	NM_172677	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	14.5	39.0	8.0	10.5	45.5	8.0
Merged-chr14-25628559-3	chr14	25628085	25629085	+	659.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 6 of 23)	intron (NM_183208, intron 6 of 23)	25072.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	0.0	8.5	1.0	0.0	0.0	0.0
Merged-chr8-10909958-3	chr8	10909465	10910465	+	659.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	10043.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-9828871-3	chr14	9828390	9829390	+	659.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 7 of 9)	intron (NM_001360141, intron 7 of 9)	-55205.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53552975-3	chr19	53552488	53553488	+	659.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23670.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0.0	0.5	1.0	0.0	0.0	1.0
Merged-chr3-19187454-2	chr3	19186954	19187954	+	659.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026182)	promoter-TSS (NM_026182)	134.0	NM_001253391	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-136323902-3	chr3	136323447	136324447	+	659.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 1 of 16)	intron (NM_001033350, intron 1 of 16)	2119.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	54.5	82.5	66.0	49.0	120.5	93.5
Merged-chr14-121588670-2	chr14	121588170	121589170	+	659.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081039, intron 38 of 53)	intron (NM_001081039, intron 38 of 53)	-83416.0	NM_053079	56643.0	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	0.0	10.0	0.0	2.0	0.0	6.0
Merged-chr5-53415625-2	chr5	53415125	53416125	+	659.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140154.0	NM_001080928	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-107966391-2	chr5	107965891	107966891	+	659.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	intron (NM_026062, intron 1 of 4)	20686.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62042619-2	chr15	62042119	62043119	+	659.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	B1_Mur4|SINE|Alu	3362.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124474417-2	chr5	124473917	124474917	+	659.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_030259, intron 1 of 3)	B3|SINE|B2	3818.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93973679-3	chr16	93973123	93974123	+	659.511108	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019500, intron 1 of 2)	G-rich|Low_complexity|Low_complexity	35214.0	NM_019500	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-9630246-4	chr1	9629696	9630696	+	659.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015470, intron 1 of 4)	intron (NR_015470, intron 1 of 4)	896.0	NR_015470	72481.0	Mm.279818	NR_015470	ENSMUSG00000079671	2610203C22Rik	2310007M24Rik	RIKEN cDNA 2610203C22 gene	ncRNA	3.5	4.0	4.0	0.0	12.5	5.5
Merged-chr11-98966570-2	chr11	98966070	98967070	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361954, intron 2 of 7)	(CA)n|Simple_repeat|Simple_repeat	1698.0	NM_001361954	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118450767-2	chr11	118450267	118451267	+	659.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001204129, exon 4 of 4)	3' UTR (NM_001204129, exon 4 of 4)	4228.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95311700-2	chr3	95311200	95312200	+	659.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3490.0	NM_029789	76893.0	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49051149-2	chr16	49050649	49051649	+	659.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-6337.0	NM_001166210	667772.0	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90058656-2	chr9	90058156	90059156	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312649, intron 1 of 10)	RSINE1|SINE|B4	4389.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21750103-2	chr13	21749603	21750603	+	659.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178211)	TTS (NM_178211)	450.0	NM_178211	319160.0	Mm.255646	NM_178211	ENSMUSG00000064288	Hist1h4k	-	histone cluster 1, H4k	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123200900-2	chr4	123200400	123201400	+	659.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085502)	promoter-TSS (NM_001085502)	-653.0	NM_001085502	230718.0	Mm.354635	NM_001085502	ENSMUSG00000054958	Nt5c1a	Cn1a|Gm49	5'-nucleotidase, cytosolic IA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147397092-2	chr4	147396592	147397592	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	Lx2B2|LINE|L1	-156185.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-64439453-2	chr14	64438953	64439953	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253715, intron 1 of 4)	intron (NM_001253715, intron 1 of 4)	1573.0	NM_001253715	110265.0	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-60518883-2	chr9	60518383	60519383	+	659.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7848.0	NM_001040426	207596.0	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24961164-2	chr2	24960664	24961664	+	659.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_147179)	TTS (NM_147179)	-1258.0	NM_001355561	67228.0	Mm.389248	NM_026044	ENSMUSG00000026975	Dph7	2810443J12Rik|AW060693|Wdr85	diphthamine biosynethesis 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80927134-2	chr10	80926634	80927634	+	659.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2957.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42655228-2	chr19	42654728	42655728	+	659.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42422.0	NM_053083	67573.0	Mm.178767	NM_053083	ENSMUSG00000025185	Loxl4	4833426I20Rik|Loxc	lysyl oxidase-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-119898339-2	chr3	119897839	119898839	+	659.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114951.0	NM_019550	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	4.0	0.0	0.0	2.0	0.0	0.0
Merged-chr7-4629657-2	chr7	4629157	4630157	+	659.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_023440, exon 2 of 3)	exon (NM_023440, exon 2 of 3)	825.0	NM_023440	68255.0	Mm.389784	NM_023440	ENSMUSG00000045282	Tmem86b	C330014O21Rik	transmembrane protein 86B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5992458-2	chr2	5991958	5992958	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081132, intron 8 of 21)	(A)n|Simple_repeat|Simple_repeat	40989.0	NM_001081132	326622.0	Mm.31102	NM_001081132	ENSMUSG00000043241	Upf2	-	UPF2 regulator of nonsense transcripts homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103962421-2	chr11	103961921	103962921	+	659.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-4304.0	NM_001304574	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5094658-2	chr11	5094158	5095158	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007968, intron 1 of 16)	B2_Mm2|SINE|B2	4430.0	NM_001283062	14030.0	Mm.142822	NM_007968	ENSMUSG00000009079	Ewsr1	Ews|Ewsh	Ewing sarcoma breakpoint region 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129207198-2	chr2	129206698	129207698	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355252, intron 1 of 5)	intron (NM_001355252, intron 1 of 5)	102.0	NM_001355252	20515.0	Mm.272675	NM_015747	ENSMUSG00000027397	Slc20a1	AI607883|Glvr-1|Glvr1	solute carrier family 20, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-21096756-2	chr3	21096256	21097256	+	659.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-729579.0	NM_175086	11608.0	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118452705-2	chr11	118452205	118453205	+	659.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001204129)	TTS (NM_001204129)	2290.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145271335-2	chr4	145270835	145271835	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009401, intron 12 of 12)	B4A|SINE|B4	-24465.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25896420-2	chr15	25895920	25896920	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 3 of 8)	intron (NM_001034851, intron 3 of 8)	-37132.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65390913-2	chr9	65390413	65391413	+	659.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_028974, exon 1 of 1)	exon (NM_028974, exon 1 of 1)	739.0	NM_028974	74492.0	Mm.159223	NM_028974	ENSMUSG00000054978	Kbtbd13	5430433E21Rik	kelch repeat and BTB (POZ) domain containing 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30913550-2	chr5	30913050	30914050	+	659.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133918)	promoter-TSS (NM_133918)	-236.0	NM_133918	100952.0	Mm.286375	NM_133918	ENSMUSG00000029163	Emilin1	5830419M17Rik|AW229038|BB105748|EMILIN-1|gp115	elastin microfibril interfacer 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127571881-2	chr10	127571381	127572381	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 33 of 88)	intron (NM_008512, intron 33 of 88)	-37322.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	15.0	16.5	9.5	14.0	14.5	8.0
Merged-chr19-61329816-2	chr19	61329316	61330316	+	659.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB7_3-LTR_MM|LTR|ERVK	-101398.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98753665-2	chr11	98753165	98754165	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178060, intron 2 of 8)	intron (NM_178060, intron 2 of 8)	11880.0	NM_001313983	21833.0	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51128377-2	chr14	51127877	51128877	+	659.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030098)	promoter-TSS (NM_030098)	-660.0	NM_030098	78416.0	Mm.103835	NM_030098	ENSMUSG00000021880	Rnase6	9530043P15Rik|BB119466	ribonuclease, RNase A family, 6	protein-coding	8.5	3.5	0.5	0.5	0.0	3.0
Merged-chr16-89833759-1	chr16	89833259	89834259	+	659.5	f0_balb.idr	intron (NM_009384, intron 14 of 27)	intron (NM_009384, intron 14 of 27)	-15407.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166329674-2	chr2	166329174	166330174	+	659.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55766.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-64888912-2	chr18	64888412	64889412	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	1156.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	3.0	4.5	0.0	0.0	4.5	0.0
Merged-chr2-104128427-2	chr2	104127907	104128907	+	659.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	5638.0	NM_026634	68243.0	Mm.158191	NM_026634	ENSMUSG00000032671	A930018P22Rik	-	RIKEN cDNA A930018P22 gene	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr12-40215617-2	chr12	40215117	40216117	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013562, intron 4 of 11)	B4A|SINE|B4	7194.0	NR_035459	100316693.0		NR_035459	ENSMUSG00000089371	Mir1938	mir-1938|mmu-mir-1938	microRNA 1938	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-35747333-2	chr3	35746833	35747833	+	659.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6730.0	NR_151626	76295.0	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-43351004-2	chr11	43350504	43351504	+	659.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23457.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73527965-2	chr7	73527465	73528465	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	B2_Mm1t|SINE|B2	13781.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38093284-3	chr16	38092812	38093812	+	659.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 1 of 11)	intron (NM_001347232, intron 1 of 11)	-4052.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-156164590-2	chr4	156164090	156165090	+	659.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_021604)	TTS (NM_021604)	32898.0	NM_021604	11603.0	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109253037-2	chr3	109252537	109253537	+	659.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87646.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	1.5	7.5	10.5	8.0	2.0	3.5
Merged-chr14-55565928-2	chr14	55565428	55566428	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_037572, intron 11 of 14)	intron (NR_037572, intron 11 of 14)	5005.0	NM_001199009	28199.0	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79686788-2	chr12	79686288	79687288	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 8 of 10)	intron (NM_009014, intron 8 of 10)	237945.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11200495-2	chr2	11199995	11200995	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	B4A|SINE|B4	28113.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59439095-2	chr15	59438595	59439595	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 3 of 4)	MTC|LTR|ERVL-MaLR	64897.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	56.5	77.0	53.0	49.0	76.0	65.5
Merged-chr8-70749370-2	chr8	70748870	70749870	+	659.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001310465, exon 16 of 17)	exon (NM_001310465, exon 16 of 17)	-5309.0	NM_001328047	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	2.0	7.5	1.5	0.5	1.0	1.0
Merged-chr17-82515921-2	chr17	82515421	82516421	+	659.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	562304.0	NR_045094	100503434.0	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125146505-2	chr6	125146005	125147005	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039669, intron 1 of 9)	intron (NM_001039669, intron 1 of 9)	1281.0	NM_001302779	320678.0	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	36.0	41.0	23.0	24.0	33.0	20.0
Merged-chr5-107962102-2	chr5	107961602	107962602	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	intron (NM_026062, intron 1 of 4)	24975.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-85080988-2	chr17	85080488	85081488	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163623, intron 4 of 13)	intron (NM_001163623, intron 4 of 13)	9279.0	NM_145984	213760.0	Mm.259035	NM_145984	ENSMUSG00000024127	Prepl	2810457N15Rik|9530014L06Rik|D030028O16Rik|mKIAA0436	prolyl endopeptidase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-79792256-2	chr9	79791756	79792756	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133718, intron 1 of 6)	intron (NM_133718, intron 1 of 6)	1174.0	NM_133718	69981.0	Mm.486324	NM_133718	ENSMUSG00000032328	Tmem30a	2010200I23Rik|AW540225|Cdc50a|D9Wsu20e	transmembrane protein 30A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29824870-2	chr11	29824383	29825383	+	659.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_176829, exon 1 of 1)	exon (NM_176829, exon 1 of 1)	785.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	0.0	3.0	0.0	0.0	0.0	0.0
Merged-chr14-34518451-4	chr14	34517951	34518951	+	659.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030062, intron 1 of 2)	intron (NM_030062, intron 1 of 2)	4350.0	NM_030062	78243.0	Mm.117483	NM_030062	ENSMUSG00000021797	9230112D13Rik	-	RIKEN cDNA 9230112D13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46047620-3	chr19	46047118	46048118	+	659.455566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-2307.0	NM_001113408	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	0.0	0.0	3.5	0.0	2.5	0.5
Merged-chr13-46984060-3	chr13	46983576	46984576	+	659.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	30774.0	NM_175340	105193.0	Mm.25593	NM_175340	ENSMUSG00000044231	Nhlrc1	AI505271|B230309E09Rik|EPM2B	NHL repeat containing 1	protein-coding	0.0	0.0	4.5	0.0	6.5	1.0
Merged-chr2-91978178-2	chr2	91977698	91978698	+	659.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-14635.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0.0	0.0	0.0	2.0	4.0	4.0
Merged-chr7-43314133-2	chr7	43313633	43314633	+	659.400024	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357811)	promoter-TSS (NM_001357811)	-833.0	NM_001357811	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121713150-2	chr11	121712650	121713650	+	659.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_144797, intron 2 of 3)	intron (NM_144797, intron 2 of 3)	10723.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-100402856-2	chr6	100402356	100403356	+	659.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115498.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62605139-2	chr10	62604639	62605639	+	659.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6-int|LTR|ERVK	-2841.0	NM_019553	56200.0	Mm.413275	NM_019553	ENSMUSG00000020075	Ddx21	AI255159|AL022742|D10Ertd645e|D10Wsu42e	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12549349-2	chr19	12548849	12549849	+	659.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVK26-int|LTR|ERVK	-24161.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-55878132-2	chr17	55877632	55878632	+	659.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_144546, intron 1 of 3)	intron (NM_144546, intron 1 of 3)	821.0	NM_144546	104349.0	Mm.460659	NM_144546	ENSMUSG00000057835	Zfp119a	AL024077|Mzf13|Zfp119	zinc finger protein 119a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-13611018-3	chr3	13610525	13611525	+	659.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040598, intron 3 of 3)	intron (NR_040598, intron 3 of 3)	41840.0	NR_040598	75203.0	Mm.490940	NR_040598		4930539N22Rik	-	RIKEN cDNA 4930539N22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128233930-2	chr10	128233430	128234430	+	659.275024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164081, intron 1 of 28)	intron (NM_001164081, intron 1 of 28)	1867.0	NM_001136082	21853.0	Mm.6458	NM_011589	ENSMUSG00000039994	Timeless	C77407|Debt69|tim	timeless circadian clock 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115651666-2	chr5	115651166	115652166	+	659.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_151599, intron 9 of 10)	intron (NR_151599, intron 9 of 10)	1920.0	NR_151601	75665.0	Mm.233914	NM_001080808	ENSMUSG00000041609	Bicdl1	2210403N09Rik|BICDR-1|Ccdc64	BICD family like cargo adaptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22476602-2	chr9	22476102	22477102	+	659.25	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178415, exon 2 of 23)	5' UTR (NM_178415, exon 2 of 23)	887.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3655031-2	chr19	3654531	3655531	+	659.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008513, intron 2 of 22)	intron (NM_008513, intron 2 of 22)	31533.0	NM_008513	16973.0	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	5.0	0.0	1.5	0.0	0.0	1.0
Merged-chr1-143903474-2	chr1	143902974	143903974	+	659.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100675.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24456063-2	chr5	24455563	24456563	+	659.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359881, intron 1 of 15)	intron (NM_001359881, intron 1 of 15)	3886.0	NM_139153	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117111263-2	chr11	117110763	117111763	+	659.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-3909.0	NR_029459	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120100715-3	chr1	120100219	120101219	+	659.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20200.0	NM_001037999	13167.0	Mm.2785	NM_007830	ENSMUSG00000026385	Dbi	ACBD1|Acbp|EP|endozepine	diazepam binding inhibitor	protein-coding	10.0	15.0	14.5	4.0	2.0	0.5
Merged-chr9-99088369-3	chr9	99087874	99088874	+	659.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 8 of 23)	intron (NM_029094, intron 8 of 23)	51837.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119167059-3	chr2	119166544	119167544	+	659.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177157)	promoter-TSS (NM_177157)	-744.0	NM_177157	320415.0	Mm.86373	NM_177157	ENSMUSG00000046814	Gchfr	2010323F13Rik|GFRP|P35	GTP cyclohydrolase I feedback regulator	protein-coding	2.0	11.5	4.0	6.0	11.5	12.5
Merged-chr12-4238083-2	chr12	4237583	4238583	+	659.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001204912, exon 2 of 2)	3' UTR (NM_001204912, exon 2 of 2)	4056.0	NM_001204912	69709.0	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-75579519-2	chr3	75579019	75580019	+	659.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009250, intron 1 of 8)	intron (NM_009250, intron 1 of 8)	22026.0	NM_001357514	20713.0	Mm.41560	NM_009250	ENSMUSG00000027834	Serpini1	AI837402|Ns|PI-12|PI12|Spi17	serine (or cysteine) peptidase inhibitor, clade I, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97070329-2	chr7	97069829	97070829	+	659.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11422.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.0	0.0	0.0	19.5	5.0	0.5
Merged-chr4-136200026-2	chr4	136199508	136200508	+	659.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6357.0	NM_001008232	230837.0	Mm.77788	NM_001008232	ENSMUSG00000036995	Asap3	9430088F20Rik|Ddefl1|Gm140|UPLC1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 3	protein-coding	2.0	0.5	0.0	5.0	0.0	0.0
Merged-chr17-26240630-2	chr17	26240130	26241130	+	659.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	3612.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	1.0	0.5	0.0	7.0	1.5	5.5
Merged-chr16-33621528-3	chr16	33621030	33622030	+	659.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134251, intron 8 of 12)	intron (NM_134251, intron 8 of 12)	-62936.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35110586-2	chr16	35110086	35111086	+	659.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45050.0	NM_001012765	224129.0	Mm.41137	NM_001012765	ENSMUSG00000022840	Adcy5	AW121902|Ac5	adenylate cyclase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102394117-4	chr7	102393639	102394639	+	659.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009287, intron 3 of 11)	ID_B1|SINE|B4	-47556.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	4.5	10.5	6.0	5.0	5.5	2.5
Merged-chr11-94588776-2	chr11	94588257	94589257	+	659.041626	f1_balb.idr|f1_c57bl6.idr	intron (NM_153807, intron 1 of 15)	intron (NM_153807, intron 1 of 15)	13029.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	5.0	13.5	2.0	3.5	7.0	3.5
Merged-chr12-32692528-2	chr12	32692028	32693028	+	659.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127807.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141619584-2	chr4	141619095	141620095	+	659.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145987)	promoter-TSS (NM_145987)	-962.0	NR_151462	213989.0	Mm.34891	NM_145987	ENSMUSG00000043085	Tmem82	-	transmembrane protein 82	protein-coding	4.5	2.5	2.5	0.0	1.0	7.0
Merged-chr10-40123405-2	chr10	40122905	40123905	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	18849.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34815910-1	chr8	34815410	34816410	+	659.0	f1_c57bl6.idr	intron (NM_176933, intron 1 of 3)	intron (NM_176933, intron 1 of 3)	8300.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	0.0	6.5	0.0	4.0	6.0	1.0
Merged-chr15-55556904-2	chr15	55556404	55557404	+	659.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134092)	promoter-TSS (NM_134092)	408.0	NM_026759	68537.0	Mm.236795	NM_026759	ENSMUSG00000022370	Mrpl13	1110002D09Rik	mitochondrial ribosomal protein L13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95647105-2	chr3	95646605	95647605	+	659.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11616.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	2.5	0.0	0.0	3.5	3.0	1.5
Merged-chr15-103334542-2	chr15	103334042	103335042	+	659.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356627)	promoter-TSS (NM_001356627)	-204.0	NM_001356627	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-10320535-1	chr10	10320035	10321035	+	659.0	f0_balb.idr	Intergenic	Intergenic	151779.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0.0	3.5	5.5	1.5	4.0	4.5
Merged-chr16-91906916-2	chr16	91906416	91907416	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 35 of 38)	intron (NM_010587, intron 35 of 38)	24714.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-87850240-1	chr8	87849740	87850740	+	659.0	f1_balb.idr	intron (NM_033327, intron 3 of 7)	intron (NM_033327, intron 3 of 7)	-45801.0	NM_001310520	94187.0	Mm.23452	NM_033327	ENSMUSG00000045333	Zfp423	Ebfaz|Roaz|Zfp104|Znf423|ataxia1|mKIAA0760|nur12	zinc finger protein 423	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7839599-2	chr9	7839099	7840099	+	659.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-2542.0	NM_007465	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120619313-2	chr5	120618813	120619813	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028041, intron 5 of 19)	intron (NM_028041, intron 5 of 19)	6183.0	NM_028041	71990.0	Mm.24495	NM_028041	ENSMUSG00000029599	Ddx54	2410015A15Rik|AI414901|DP97	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25463099-3	chr14	25462522	25463522	+	659.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	3837.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123871466-1	chr5	123870966	123871966	+	659.0	f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-5950.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	1.0	0.0	0.0	0.0	0.0	1.0
Merged-chr4-101359130-2	chr4	101358630	101359630	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040640, intron 1 of 3)	intron (NR_040640, intron 1 of 3)	-2882.0	NR_040708	77866.0	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59163005-1	chr2	59162505	59163505	+	659.0	f0_balb.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	2155.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-155957648-1	chr3	155957148	155958148	+	659.0	f1_c57bl6.idr	Intergenic	RLTR10C|LTR|ERVK	-18706.0	NR_040553	329780.0	Mm.119000	NR_040553	ENSMUSG00000104553	9330178D15Rik	9330178D15	RIKEN cDNA 9330178D15 gene	ncRNA	3.5	4.5	0.0	0.0	1.5	0.0
Merged-chr14-21877581-1	chr14	21877081	21878081	+	659.0	f0_balb.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-28671.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	3.0	7.5	0.5	2.0	1.0	3.0
Merged-chr7-30433246-1	chr7	30432746	30433746	+	659.0	f1_balb.idr	Intergenic	B1_Mur1|SINE|Alu	9971.0	NM_172142	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	10.5	2.0	0.0	2.0	0.5	0.0
Merged-chr11-116448774-1	chr11	116448274	116449274	+	659.0	f1_balb.idr	intron (NM_001033267, intron 2 of 13)	intron (NM_001033267, intron 2 of 13)	5573.0	NM_001033267	217341.0	Mm.387352	NM_001033267	ENSMUSG00000070331	Qrich2	Gm66	glutamine rich 2	protein-coding	0.0	0.0	0.5	1.5	1.5	0.0
Merged-chr16-57420861-1	chr16	57420361	57421361	+	659.0	f1_balb.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	67584.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	7.5	2.0	5.0	2.0	4.0	3.0
Merged-chr18-44842252-2	chr18	44841752	44842752	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163013, intron 7 of 29)	intron (NM_001163013, intron 7 of 29)	13587.0	NM_001163013	240255.0	Mm.244482	NM_001163013	ENSMUSG00000034653	Ythdc2	3010002F02Rik|BC037178	YTH domain containing 2	protein-coding	2.5	5.0	4.5	0.0	3.5	8.0
Merged-chr6-7857042-3	chr6	7856546	7857546	+	659.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_052993, intron 1 of 3)	RMER20C_Mm|LTR|ERVK	11822.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173730242-1	chr1	173729742	173730742	+	659.0	f0_balb.idr	exon (NM_001204910, exon 5 of 8)	exon (NM_001204910, exon 5 of 8)	11567.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	6.5	3.5	4.5	7.5	10.0	5.0
Merged-chr16-88084434-1	chr16	88083934	88084934	+	659.0	f1_balb.idr	intron (NM_146072, intron 1 of 16)	intron (NM_146072, intron 1 of 16)	175163.0	NR_155304	105246151.0	Mm.449986	NR_155304		4930590A17Rik	-	RIKEN cDNA 4930590A17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120303189-1	chr11	120302689	120303689	+	659.0	f1_balb.idr	Intergenic	Intergenic	44224.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	4.5	1.0	3.5	13.5	6.5	0.5
Merged-chr1-193128347-2	chr1	193127847	193128847	+	659.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151719, exon 3 of 12)	non-coding (NR_151719, exon 3 of 12)	1904.0	NM_145415	215193.0	Mm.173758	NM_145415	ENSMUSG00000016181	Diexf	AA408296|AW045375|Def	digestive organ expansion factor homolog (zebrafish)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65553349-1	chr9	65552849	65553849	+	659.0	f1_c57bl6.idr	3' UTR (NM_153119, exon 6 of 6)	3' UTR (NM_153119, exon 6 of 6)	26738.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	4.5	7.0	3.5	7.0	17.5	13.0
Merged-chr5-114608723-2	chr5	114608225	114609225	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004180, intron 2 of 2)	intron (NM_001004180, intron 2 of 2)	40474.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr10-12875621-1	chr10	12875121	12876121	+	659.0	f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-13886.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	18.0	42.0	23.0	7.5	46.0	19.5
Merged-chr10-62603395-2	chr10	62602895	62603895	+	659.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-1097.0	NM_019553	56200.0	Mm.413275	NM_019553	ENSMUSG00000020075	Ddx21	AI255159|AL022742|D10Ertd645e|D10Wsu42e	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8177453-2	chr4	8176953	8177953	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007592, intron 7 of 8)	intron (NM_007592, intron 7 of 8)	61588.0	NM_007592	12319.0	Mm.119320	NM_007592	ENSMUSG00000041261	Car8	AW546993|Ca8|Cals|Cals1|Carp|wdl	carbonic anhydrase 8	protein-coding	1.0	0.0	1.0	4.0	10.5	1.0
Merged-chr7-98096012-2	chr7	98095512	98096512	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008663, intron 8 of 48)	intron (NM_008663, intron 8 of 48)	13236.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr13-62956870-3	chr13	62956412	62957412	+	659.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-7981.0	NM_001289926	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	2.0	0.0	1.0	5.0	3.0	2.0
Merged-chr9-21138500-2	chr9	21138000	21139000	+	659.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_016742)	TTS (NM_016742)	-7225.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70131540-2	chr14	70131040	70132040	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021328, intron 6 of 8)	intron (NM_021328, intron 6 of 8)	22251.0	NM_146055	219158.0	Mm.218284	NM_146055	ENSMUSG00000033712	Ccar2	2610301G19Rik|Dbc1|mKIAA1967	cell cycle activator and apoptosis regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67589716-2	chr17	67589216	67590216	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155516, intron 2 of 2)	intron (NR_155516, intron 2 of 2)	39616.0	NR_155516	102640031.0	Mm.421441	NR_155516		Gm36201	-	predicted gene, 36201	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-72235160-1	chr2	72234660	72235660	+	659.0	f1_c57bl6.idr	intron (NM_001355478, intron 21 of 26)	intron (NM_001355478, intron 21 of 26)	-50477.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	4.0	0.0	0.0	2.0	1.0	2.0
Merged-chr3-54764660-1	chr3	54764160	54765160	+	659.0	f0_balb.idr	intron (NM_019483, intron 1 of 5)	intron (NM_019483, intron 1 of 5)	9078.0	NM_019483	55994.0	Mm.244353	NM_019483	ENSMUSG00000027796	Smad9	MADH6|Madh8|Madh9|Smad8	SMAD family member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33761775-2	chr17	33761275	33762275	+	659.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1289.0	NM_008997	19326.0	Mm.387587	NM_008997	ENSMUSG00000077450	Rab11b	A730055L17Rik	RAB11B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54485182-1	chr11	54484682	54485682	+	659.0	f0_balb.idr	intron (NM_173753, intron 6 of 17)	intron (NM_173753, intron 6 of 17)	-37663.0	NM_001252494	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11137645-2	chr16	11137145	11138145	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027502, intron 22 of 22)	ID4|SINE|ID	-3113.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30573624-2	chr14	30573124	30574124	+	659.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009388, exon 14 of 14)	3' UTR (NM_009388, exon 14 of 14)	1475.0	NR_037237	100526475.0		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	4.5	4.0	0.0	0.0	0.0	1.0
Merged-chr11-78265520-2	chr11	78265020	78266020	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002004, intron 6 of 38)	B1F1|SINE|Alu	3766.0	NM_001002004	72503.0	Mm.237103	NM_001002004	ENSMUSG00000010277	2610507B11Rik	AU022687|D11Bhm178e|D11Bhm179e|E1|Kiaa0100|mKIAA0100	RIKEN cDNA 2610507B11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-113518329-1	chr7	113517829	113518829	+	659.0	f0_balb.idr	intron (NM_001360668, intron 1 of 12)	intron (NM_001360668, intron 1 of 12)	4495.0	NM_001360669	67420.0	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32172524-1	chr19	32172024	32173024	+	659.0	f0_balb.idr	intron (NM_144792, intron 5 of 9)	ORR1C2|LTR|ERVL-MaLR	38489.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25403312-2	chr2	25402812	25403812	+	659.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008721, exon 1 of 9)	exon (NM_008721, exon 1 of 9)	262.0	NM_008721	18146.0	Mm.1131	NM_008721	ENSMUSG00000015094	Npdc1	AI314472|NPDC-1	neural proliferation, differentiation and control 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-124267595-2	chr14	124267095	124268095	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207667, intron 1 of 4)	L1_Mus4|LINE|L1	-75049.0	NM_010201	14169.0	Mm.206362	NM_010201	ENSMUSG00000025551	Fgf14	FHF-4|Fhf4|Tg(tetO-MAPT*P301L)4510Kha|mFHF-4(1B)	fibroblast growth factor 14	protein-coding	1.0	0.0	0.0	0.0	0.0	0.5
Merged-chr17-27111716-2	chr17	27111216	27112216	+	659.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_080553, exon 38 of 58)	exon (NM_080553, exon 38 of 58)	20471.0	NR_106142	102465779.0		NR_106142	ENSMUSG00000098826	Mir7677	Gm27400|mmu-mir-7677	microRNA 7677	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89073345-2	chr15	89072845	89073845	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040417, intron 2 of 3)	intron (NR_040417, intron 2 of 3)	2509.0	NR_040417	69120.0	Mm.276391	NR_040417	ENSMUSG00000087331	1810021B22Rik	-	RIKEN cDNA 1810021B22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-181861933-2	chr1	181861433	181862433	+	659.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-19532.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-69396440-2	chr18	69395936	69396936	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	50276.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	1.5	0.0	1.5	0.0	0.0	6.0
Merged-chr8-120594781-2	chr8	120594281	120595281	+	659.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5706.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53535033-2	chr11	53534533	53535533	+	659.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001252332, exon 4 of 10)	exon (NM_001252332, exon 4 of 10)	14845.0	NM_001361969	20362.0	Mm.274399	NM_033144	ENSMUSG00000018398	Sept8	AW046166|Sepl	septin 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100397247-1	chr12	100396747	100397747	+	659.0	f0_c57.idr	intron (NM_001033213, intron 9 of 19)	L1MB7|LINE|L1	120638.0	NR_045741	100038713.0	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-137727753-2	chr6	137727253	137728253	+	659.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7329.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-6307789-1	chr6	6307289	6308289	+	659.0	f0_balb.idr	intron (NR_136905, intron 1 of 3)	intron (NR_136905, intron 1 of 3)	59130.0	NR_136905	101056138.0	Mm.389085	NR_136904	ENSMUSG00000093482	Gm20619	-	predicted gene 20619	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112532257-1	chr13	112531757	112532757	+	659.0	f1_c57bl6.idr	intron (NM_139299, intron 12 of 16)	intron (NM_139299, intron 12 of 16)	48405.0	NM_139299	218624.0	Mm.380801	NM_139299	ENSMUSG00000050377	Il31ra	CRL3|GLM-R|GPL|Glmr|NR10	interleukin 31 receptor A	protein-coding	6.0	9.0	7.0	0.0	7.0	3.0
Merged-chr7-129996303-2	chr7	129995803	129996803	+	659.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34138.0	NR_046077	100043150.0	Mm.334264	NR_046077	ENSMUSG00000108504	Gm4265	-	predicted gene 4265	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53750678-1	chr18	53750178	53751178	+	659.0	f1_balb.idr	Intergenic	Intergenic	-6131.0	NM_178686	225523.0	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding	0.0	1.0	2.0	0.0	2.0	0.0
Merged-chr11-70236084-2	chr11	70235584	70236584	+	659.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029581)	TTS (NR_029581)	1042.0	NR_029581	387190.0		NR_029581	ENSMUSG00000065411	Mir195a	Mir195|Mirn195|mir-195a|mmu-mir-195|mmu-mir-195a	microRNA 195a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55732867-2	chr16	55732367	55733367	+	659.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	89271.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-114588336-2	chr1	114587836	114588836	+	659.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1096801.0	NM_001077425	636808.0	Mm.101576	NM_001077425	ENSMUSG00000070695	Cntnap5a	Caspr5-1|EG636808	contactin associated protein-like 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-47114204-1	chr11	47113704	47114704	+	659.0	f1_balb.idr	intron (NM_011891, intron 5 of 7)	intron (NM_011891, intron 5 of 7)	265098.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	0.0	7.5	0.0	3.5	2.0	2.0
Merged-chr1-106170948-1	chr1	106170448	106171448	+	659.0	f1_balb.idr	promoter-TSS (NM_133821)	promoter-TSS (NM_133821)	576.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	10.0	1.0	1.0	2.5	4.0	6.5
Merged-chr12-99565593-2	chr12	99565093	99566093	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_136760, intron 2 of 3)	intron (NR_136760, intron 2 of 3)	1752.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113489797-2	chr6	113489297	113490297	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_145485, intron 6 of 9)	intron (NR_145485, intron 6 of 9)	6441.0	NR_145485	171508.0	Mm.41593	NM_133930	ENSMUSG00000030284	Creld1	AI843811|i11E7	cysteine-rich with EGF-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90924188-2	chr5	90923687	90924687	+	659.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-7009.0	NM_026788	665563.0	Mm.153030	NM_026788	ENSMUSG00000029376	Mthfd2l	1110019K23Rik|C630010D07Rik	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like	protein-coding	0.0	0.0	1.0	0.0	0.0	2.0
Merged-chr8-124292997-1	chr8	124292497	124293497	+	659.0	f1_c57bl6.idr	intron (NM_139272, intron 1 of 15)	intron (NM_139272, intron 1 of 15)	61603.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	0.0	0.5	6.0	6.0	0.0	5.0
Merged-chr8-105716758-2	chr8	105716258	105717258	+	659.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027469, exon 3 of 3)	exon (NM_027469, exon 3 of 3)	8469.0	NM_027655	71046.0	Mm.280888	NM_027655	ENSMUSG00000013158	4933405L10Rik	-	RIKEN cDNA 4933405L10 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6056981-3	chr15	6056480	6057480	+	659.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12276.0	NR_155429	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120150960-2	chr2	120150460	120151460	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 1 of 5)	intron (NM_133838, intron 1 of 5)	3615.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	7.5	2.0	9.5	4.5	3.0	3.5
Merged-chr9-78596613-2	chr9	78596116	78597116	+	659.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-8571.0	NM_001276452	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49254570-2	chr7	49254070	49255070	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 1 of 37)	ORR1B2|LTR|ERVL-MaLR	8381.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-51270990-2	chr7	51270490	51271490	+	659.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-240039.0	NR_073508	233246.0	Mm.254431	NM_177694	ENSMUSG00000055489	Ano5	9330162L24|Gdd1|Tmem16e	anoctamin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12778959-2	chr17	12778459	12779459	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027773, intron 1 of 2)	intron (NR_027773, intron 1 of 2)	-9253.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-101208300-1	chr14	101207800	101208800	+	659.0	f1_balb.idr	Intergenic	RMER19C|LTR|ERVK	-8231.0	NM_029680	76627.0	Mm.31415	NM_029680	ENSMUSG00000042888	Prr30	1700110M21Rik	proline rich 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-35148193-3	chr6	35147695	35148695	+	659.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-14458.0	NM_001164414	53621.0	Mm.214525	NM_016877	ENSMUSG00000038784	Cnot4	Not4|Not4h|Not4hp	CCR4-NOT transcription complex, subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-46616395-2	chr7	46615895	46616895	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013789, intron 7 of 10)	intron (NM_013789, intron 7 of 10)	23412.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4233522-2	chr18	4233022	4234022	+	659.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67690.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65740325-2	chr9	65739819	65740819	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172536, intron 2 of 9)	intron (NM_172536, intron 2 of 9)	63771.0	NM_001301307	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	0.0	1.5	6.0	0.5	4.5	15.5
Merged-chr1-153332536-3	chr1	153332041	153333041	+	659.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010683, exon 1 of 28)	5' UTR (NM_010683, exon 1 of 28)	245.0	NM_010683	226519.0	Mm.1249	NM_010683	ENSMUSG00000026478	Lamc1	Lamb2	laminin, gamma 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3089724-1	chr4	3089224	3090224	+	659.0	f0_balb.idr	Intergenic	GSAT_MM|Satellite|Satellite	-82359.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134606739-2	chr6	134606239	134607239	+	659.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	25749.0	NM_026345	67729.0	Mm.57648	NM_026345	ENSMUSG00000032718	Mansc1	9130403P13Rik	MANSC domain containing 1	protein-coding	12.5	5.0	5.5	11.0	0.0	2.5
Merged-chr6-17516213-1	chr6	17515713	17516713	+	659.0	f0_balb.idr	intron (NM_008591, intron 4 of 21)	intron (NM_008591, intron 4 of 21)	52256.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	1.5	5.0	2.0	5.5	15.5	9.0
Merged-chr1-84943812-1	chr1	84943312	84944312	+	659.0	f0_balb.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-8729.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	0.0	2.0	1.5	0.0	2.5	1.5
Merged-chr6-124699141-2	chr6	124698641	124699641	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_149320, intron 2 of 11)	ID4_|SINE|ID	13037.0	NM_013536	14791.0	Mm.6390	NM_013536	ENSMUSG00000004268	Emg1	C2f|Grcc2f	EMG1 N1-specific pseudouridine methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33826518-2	chr17	33826013	33827013	+	659.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_103515)	TTS (NR_103515)	1868.0	NR_103514	66416.0	Mm.29513	NM_023202	ENSMUSG00000041881	Ndufa7	14.5kDa|2400007M02Rik|CI-B14.5a	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a)	protein-coding	9.0	14.5	11.5	9.5	14.5	17.5
Merged-chr14-30622914-2	chr14	30622414	30623414	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	PB1D9|SINE|Alu	3294.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3240734-2	chr12	3240234	3241234	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_015551, intron 4 of 6)	intron (NR_015551, intron 4 of 6)	4943.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36534815-2	chr18	36534315	36535315	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271544, intron 14 of 21)	intron (NM_001271544, intron 14 of 21)	6663.0	NM_001271545	240215.0	Mm.135463	NM_172830	ENSMUSG00000024485	Slc4a9	AE4|D630003B07|D630024F24Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-64962057-1	chr18	64961557	64962557	+	659.0	f1_balb.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	-61470.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	54.5	57.5	68.0	46.5	29.0	35.5
Merged-chr15-89425774-2	chr15	89425274	89426274	+	659.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009948)	promoter-TSS (NM_009948)	88.0	NM_009948	12895.0	Mm.227738	NM_009948	ENSMUSG00000078937	Cpt1b	Cpt1|Cpt1-m|Cpti|Cpti-m|M-cpti	carnitine palmitoyltransferase 1b, muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77802664-2	chr9	77802164	77803164	+	658.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	48129.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr18-9451023-3	chr18	9450480	9451480	+	658.9111330000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026484)	promoter-TSS (NM_026484)	-826.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0.0	0.0	1.5	3.0	4.5	2.0
Merged-chr9-26962437-3	chr9	26961934	26962934	+	658.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37115.0	NM_025862	66948.0	Mm.289244	NM_025862	ENSMUSG00000031969	Acad8	2310016C19Rik|AI786953	acyl-Coenzyme A dehydrogenase family, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-139874625-3	chr6	139874126	139875126	+	658.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207683, intron 23 of 31)	intron (NM_207683, intron 23 of 31)	33181.0	NM_011084	18705.0	Mm.333471	NM_011084	ENSMUSG00000030228	Pik3c2g	C80387|PI3K-C2-gamma	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma	protein-coding	0.0	11.0	0.5	4.0	3.5	3.5
Merged-chr4-150964792-2	chr4	150964292	150965292	+	658.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	U1|snRNA|snRNA	-32305.0	NM_011910	24111.0	Mm.89984	NM_011910	ENSMUSG00000028963	Uts2	UII|Ucn2|prepro-UII	urotensin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134584100-2	chr5	134583600	134584600	+	658.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_020022, intron 1 of 10)	intron (NM_020022, intron 1 of 10)	1410.0	NM_020022	19718.0	Mm.332739	NM_020022	ENSMUSG00000023104	Rfc2	2610008M13Rik|40kDa|AI326953|Recc2	replication factor C (activator 1) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109424601-4	chr11	109424084	109425084	+	658.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC4a|LINE|L1	-1362.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	3.0	14.0	12.5	4.0	4.5	10.0
Merged-chr7-106810243-3	chr7	106809740	106810740	+	658.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3780.0	NM_146600	258593.0	Mm.377583	NM_146600	ENSMUSG00000094493	Olfr700	MOR283-4	olfactory receptor 700	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62105436-2	chr10	62104936	62105936	+	658.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5532.0	NM_001358253	69894.0	Mm.294126	NM_027251	ENSMUSG00000020083	Fam241b	2010107G23Rik|AA545165	family with sequence similarity 241, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66337632-2	chr5	66337132	66338132	+	658.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001201416)	promoter-TSS (NM_001201416)	33.0	NM_001201416	11787.0	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-33997288-3	chr5	33996788	33997788	+	658.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001985, intron 1 of 2)	CpG	1304.0	NM_001001985	269642.0	Mm.274610	NM_001001985	ENSMUSG00000048142	Nat8l	1110038O08Rik|Shati	N-acetyltransferase 8-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-186123886-4	chr1	186123398	186124398	+	658.779175	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-6588.0	NM_146106	226791.0	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81267558-2	chr10	81267058	81268058	+	658.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018758)	promoter-TSS (NM_018758)	-614.0	NM_018758	57267.0	Mm.293931	NM_018758	ENSMUSG00000004931	Apba3	AW208791|Mint-3|X11gamma|lin-10|mint3	amyloid beta (A4) precursor protein-binding, family A, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172473096-3	chr1	172472589	172473589	+	658.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2271.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	23.0	67.5	36.5	19.5	36.5	21.5
Merged-chr12-79931297-2	chr12	79930797	79931797	+	658.75	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131074, exon 2 of 4)	non-coding (NR_131074, exon 2 of 4)	4967.0	NR_131074	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	3.5	0.5	1.0	0.5
Merged-chr7-35030112-2	chr7	35029612	35030612	+	658.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 11 of 14)	intron (NM_008820, intron 11 of 14)	26454.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93919731-3	chr10	93919270	93920270	+	658.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28568.0	NM_019648	56307.0	Mm.289329	NM_019648	ENSMUSG00000036112	Metap2	4930584B20Rik|A930035J23Rik|AI047573|AL024412|AU014659|Amp2|Mnpep|p67|p67eIF2	methionine aminopeptidase 2	protein-coding	4.0	3.0	4.5	0.0	5.0	3.5
Merged-chr12-72334271-3	chr12	72333758	72334758	+	658.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153457, intron 1 of 8)	intron (NM_153457, intron 1 of 8)	74796.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80043472-1	chr15	80042972	80043972	+	658.666687	f0_balb.idr	Intergenic	Intergenic	-28664.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	4.5	46.5	42.5	32.5	99.0	81.5
Merged-chr9-56744562-3	chr9	56744064	56745064	+	658.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181074, intron 2 of 6)	intron (NM_181074, intron 2 of 6)	51746.0	NM_001361118	235402.0	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-58374360-2	chr3	58373860	58374860	+	658.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40360.0	NM_001081229	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74924255-2	chr11	74923755	74924755	+	658.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013761, intron 1 of 8)	B2_Mm2|SINE|B2	1543.0	NM_013761	27364.0	Mm.131443	NM_013761	ENSMUSG00000001323	Srr	M100034|Rgsc34|Srs	serine racemase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-25799749-2	chr16	25799249	25800249	+	658.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127259, intron 3 of 13)	MIR3|SINE|MIR	-2167.0	NM_001127263	22061.0	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20794891-4	chr11	20794431	20795431	+	658.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36177.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81123854-4	chr15	81123382	81124382	+	658.6190190000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 1 of 13)	B1_Mur4|SINE|Alu	-18835.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	32.0	68.5	36.0	29.0	68.5	25.0
Merged-chr7-35396332-3	chr7	35395842	35396842	+	658.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028120)	promoter-TSS (NM_028120)	425.0	NM_178643	101831.0	Mm.389855	NM_178643	ENSMUSG00000030493	Faap24	AW124591|AW538696|C230052I12Rik	Fanconi anemia core complex associated protein 24	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr3-39791699-2	chr3	39791199	39792199	+	658.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	731213.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	3.5	0.0	1.0	0.0	0.0	1.0
Merged-chr3-30855138-1	chr3	30854638	30855638	+	658.5	f0_balb.idr	promoter-TSS (NM_001134386)	promoter-TSS (NM_001134386)	-812.0	NM_001134386	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-36554221-2	chr3	36553721	36554721	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019393, intron 4 of 11)	intron (NM_019393, intron 4 of 11)	1615.0	NM_019393	50911.0	Mm.116711	NM_019393	ENSMUSG00000027714	Exosc9	PM/Scl-75|Pmscl1|RRP45|p5|p6	exosome component 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128736319-2	chr6	128735817	128736817	+	658.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-13271.0	NM_001099918	100043861.0	Mm.66911	NM_001099918	ENSMUSG00000079299	Klrb1	4930431A04Rik|Gm4696|Klrb1g|Klrb6|Ly-55|Ly55|NKR-P1G|Nkrp-1e|Nkrp1g	killer cell lectin-like receptor subfamily B member 1	protein-coding	2.0	8.0	6.5	4.5	4.5	2.5
Merged-chr2-75605910-2	chr2	75605410	75606410	+	658.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53349.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45141718-2	chr7	45141218	45142218	+	658.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145954)	TTS (NM_145954)	-5286.0	NR_102725	14256.0	Mm.1658	NM_013520	ENSMUSG00000110206	Flt3l	Flt3lg|Ly72L	FMS-like tyrosine kinase 3 ligand	protein-coding	0.0	2.5	0.0	0.5	2.0	0.0
Merged-chr7-29309791-2	chr7	29309311	29310311	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013874, intron 3 of 11)	intron (NM_013874, intron 3 of 11)	5806.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	2.0	1.5	2.5	0.0	0.0	2.5
Merged-chr17-5664332-2	chr17	5663823	5664823	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 2 of 8)	B4A|SINE|B4	-134334.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53303365-2	chr11	53302865	53303865	+	658.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-2886.0	NM_008300	15525.0	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-43575397-2	chr11	43574897	43575897	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045530, intron 3 of 5)	intron (NM_001045530, intron 3 of 5)	26165.0	NM_008375	16204.0	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152530986-2	chr1	152530486	152531486	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 14 of 17)	intron (NM_016846, intron 14 of 17)	94231.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81698754-2	chr15	81698254	81699254	+	658.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1467.0	NM_001164320	214685.0	Mm.393287	NM_001164320	ENSMUSG00000063765	Chadl	AY100452|D930017K21Rik	chondroadherin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-42514170-2	chr18	42513670	42514670	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360881, intron 1 of 20)	intron (NM_001360881, intron 1 of 20)	2683.0	NR_110344	56070.0	Mm.270511	NM_001039474	ENSMUSG00000024498	Tcerg1	2410022J09Rik|2900090C16Rik|AI428505|CA150b|FBP23|FBP28|Taf2s|ca150|p144	transcription elongation regulator 1 (CA150)	protein-coding	1.0	7.0	4.5	1.0	8.0	4.0
Merged-chr16-64758903-2	chr16	64758403	64759403	+	658.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12036.0	NM_026273	67609.0	Mm.212157	NM_026273	ENSMUSG00000059920	4930453N24Rik	AI649104|din	RIKEN cDNA 4930453N24 gene	protein-coding	0.0	0.5	2.0	0.0	0.0	3.5
Merged-chr17-63498715-2	chr17	63498215	63499215	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 1 of 8)	intron (NM_015794, intron 1 of 8)	1865.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8821154-2	chr19	8820654	8821654	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081196, intron 1 of 13)	intron (NM_001081196, intron 1 of 13)	1753.0	NM_001081196	68693.0	Mm.476519	NM_001081196	ENSMUSG00000071659	Hnrnpul2	1110031M08Rik|AI465155|Hnrpul2	heterogeneous nuclear ribonucleoprotein U-like 2	protein-coding	13.0	47.0	46.0	13.0	23.5	21.0
Merged-chr9-66377374-2	chr9	66376874	66377874	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145617, intron 3 of 77)	Lx2|LINE|L1	26924.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-85669198-2	chr15	85668698	85669698	+	658.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34575.0	NR_110483	102800312.0	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	1.0	15.0	15.0	1.0	1.5	4.0
Merged-chr3-87119195-2	chr3	87118695	87119695	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170985, intron 2 of 15)	(CAT)n|Simple_repeat|Simple_repeat	55552.0	NM_001170985	170643.0	Mm.89552	NM_130867	ENSMUSG00000041734	Kirrel	6720469N11Rik|Kirrel1|Neph1	kirre like nephrin family adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-82439931-2	chr17	82439431	82440431	+	658.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	638294.0	NR_045094	100503434.0	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71372787-2	chr8	71372405	71373405	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_122030, intron 2 of 2)	intron (NR_122030, intron 2 of 2)	1607.0	NM_001293800	77090.0	Mm.440170	NM_029865	ENSMUSG00000002396	Ocel1	9430098E02Rik|AI326022|AI593544	occludin/ELL domain containing 1	protein-coding	0.0	7.5	3.0	2.5	2.5	1.0
Merged-chr9-44344718-2	chr9	44344218	44345218	+	658.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013551)	promoter-TSS (NM_013551)	-490.0	NM_013551	15288.0	Mm.247676	NM_013551	ENSMUSG00000032126	Hmbs	PBGD|T25658|Ups|Uros1	hydroxymethylbilane synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-81858096-2	chr12	81857596	81858596	+	658.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1934.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-25998454-2	chr3	25997954	25998954	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138666, intron 3 of 7)	RSINE1|SINE|B4	155532.0	NM_001163387	192167.0	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12146946-2	chr13	12146446	12147446	+	658.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC|LINE|L1	39542.0	NR_045170	328186.0	Mm.188154	NM_183202		Gm10336	B330003H21	predicted gene 10336	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-15987487-2	chr7	15986987	15987987	+	658.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081418, exon 5 of 14)	exon (NM_001081418, exon 5 of 14)	12008.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117046187-2	chr10	117045687	117046687	+	658.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_146242, exon 1 of 1)	exon (NM_146242, exon 1 of 1)	846.0	NM_146242	237560.0	Mm.37320	NM_146242	ENSMUSG00000060187	Lrrc10	D330003I11Rik|Hrlrrp|Serdin1	leucine rich repeat containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130839920-2	chr4	130839420	130840420	+	658.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47383.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128716806-2	chr4	128716306	128717306	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 7 of 14)	intron (NM_018774, intron 7 of 14)	-10765.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5869501-2	chr13	5869001	5870001	+	658.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011803, exon 4 of 4)	3' UTR (NM_011803, exon 4 of 4)	8012.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95649932-2	chr3	95649432	95650432	+	658.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-8789.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	14.0	30.0	13.5	17.0	42.0	19.5
Merged-chr17-47501492-2	chr17	47500992	47501992	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356290, intron 1 of 7)	B3A|SINE|B2	799.0	NM_001356290	63856.0	Mm.275901	NM_022015	ENSMUSG00000023980	Taf8	AW260255|Tbn	TATA-box binding protein associated factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17683478-1	chr12	17682978	17683978	+	658.5	f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-7331.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	10.0	15.0	5.0	15.5	8.0	3.5
Merged-chr18-46527604-2	chr18	46527104	46528104	+	658.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1633.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-50177753-2	chr10	50177253	50178253	+	658.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	-388987.0	NM_001111268	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139580720-2	chr4	139580223	139581223	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	6003.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	5.0	7.0	1.0	0.0	3.0	4.0
Merged-chr10-70161734-2	chr10	70161234	70162234	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111121, intron 3 of 8)	intron (NM_001111121, intron 3 of 8)	-42930.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87999927-2	chr3	87999427	88000427	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007529, intron 1 of 13)	CpG	429.0	NM_007529	12032.0	Mm.4598	NM_007529	ENSMUSG00000004892	Bcan	Cspg7	brevican	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69890254-2	chr11	69889754	69890754	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153788, intron 5 of 21)	intron (NM_153788, intron 5 of 21)	5285.0	NM_153788	216859.0	Mm.288671	NM_153788	ENSMUSG00000001588	Acap1	Centb1	ArfGAP with coiled-coil, ankyrin repeat and PH domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-45373520-2	chr10	45373020	45374020	+	658.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37758.0	NM_024285	23828.0	Mm.332793	NM_024285	ENSMUSG00000071317	Bves	Pop1|Popdc1|mBVES	blood vessel epicardial substance	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28365023-2	chr7	28364523	28365523	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138752, intron 11 of 18)	intron (NM_138752, intron 11 of 18)	7639.0	NM_138752	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31402499-2	chr6	31401999	31402999	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013791, intron 1 of 17)	MT-int|LTR|ERVL-MaLR	3671.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87462787-2	chr6	87462287	87463287	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 10 of 10)	intron (NM_001037727, intron 10 of 10)	33540.0	NR_104483	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81347393-2	chr10	81346893	81347893	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163165, intron 7 of 9)	intron (NM_001163165, intron 7 of 9)	3033.0	NM_001163165	15353.0	Mm.38474	NM_010440	ENSMUSG00000020232	Hmg20b	AW610687|BRAF35|Hmgx2|Hmgxb2|Smarce1r	high mobility group 20B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43282345-2	chr17	43281845	43282845	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133776, intron 1 of 15)	intron (NM_133776, intron 1 of 15)	11998.0	NM_133776	77596.0	Mm.159950	NM_133776	ENSMUSG00000041293	Adgrf1	5031409J19Rik|Gpr110|KPG_009	adhesion G protein-coupled receptor F1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106131424-2	chr8	106130924	106131924	+	658.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010901)	TTS (NM_010901)	-3976.0	NR_040345	69771.0	Mm.393274	NR_040344		1810019D21Rik	-	RIKEN cDNA 1810019D21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93642168-2	chr10	93641591	93642591	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021320, intron 1 of 9)	intron (NM_021320, intron 1 of 9)	1042.0	NM_021320	57764.0	Mm.483868	NM_021320	ENSMUSG00000020019	Ntn4	-	netrin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11741188-2	chr2	11740688	11741688	+	658.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	35476.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84801610-2	chr10	84801110	84802110	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024918, intron 3 of 17)	intron (NM_001024918, intron 3 of 17)	-36538.0	NM_027689	71137.0	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	0.0	5.5	0.5	0.0	4.5	0.0
Merged-chr17-10386951-2	chr17	10386451	10387451	+	658.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62349.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-42532746-2	chr12	42532246	42533246	+	658.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	501471.0	NR_148724	102636207.0		NR_148724		Gm33340	Gm40882	predicted gene, 33340	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135354532-2	chr4	135354032	135355032	+	658.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-1318.0	NM_001130477	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11011191-2	chr8	11010691	11011691	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_046017, intron 1 of 4)	intron (NR_046017, intron 1 of 4)	-2761.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43840459-2	chr5	43839959	43840959	+	658.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009763, exon 8 of 9)	exon (NM_009763, exon 8 of 9)	21566.0	NM_009763	12182.0	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	0.0	0.0	2.5	0.0	10.5	1.0
Merged-chr18-32559926-3	chr18	32559363	32560363	+	658.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001048207, exon 1 of 3)	5' UTR (NM_001048207, exon 1 of 3)	171.0	NM_001048207	71683.0	Mm.292145	NM_027863	ENSMUSG00000090523	Gypc	0610037F22Rik|Cd236r	glycophorin C	protein-coding	0.0	0.0	1.0	1.5	0.0	0.5
Merged-chr8-36820738-3	chr8	36820267	36821267	+	658.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 4 of 17)	intron (NM_001194940, intron 4 of 17)	-87713.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	4.0	14.5	2.0	10.5	11.5	7.0
Merged-chr11-115881241-2	chr11	115880741	115881741	+	658.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18898.0	NM_183259	66528.0	Mm.275740	NM_183259	ENSMUSG00000048442	Smim5	2210020M01Rik	small integral membrane protein 5	protein-coding	0.0	4.0	1.0	0.0	0.0	3.0
Merged-chr15-81072978-2	chr15	81072478	81073478	+	658.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	B3|SINE|B2	32069.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126860816-2	chr8	126860316	126861316	+	658.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	11796.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	2.0	0.0	3.0	0.0	0.0
Merged-chr2-155442756-3	chr2	155442253	155443253	+	658.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1970.0	NM_019825	56406.0	Mm.27592	NM_019825	ENSMUSG00000038369	Ncoa6	AIB3|ASC-2|ASC2|NRC|Ncoa7|PRIP|RAP250|mKIAA0181	nuclear receptor coactivator 6	protein-coding	8.0	12.5	15.0	8.5	23.5	12.5
Merged-chr17-79568665-3	chr17	79568164	79569164	+	658.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46236.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-25050284-3	chr16	25049773	25050773	+	658.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9366.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110434963-3	chr5	110434456	110435456	+	658.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317042, intron 1 of 2)	intron (NM_001317042, intron 1 of 2)	13547.0	NM_001317042	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93191065-2	chr10	93190497	93191497	+	658.291626	f0_c57.idr|f1_c57bl6.idr	intron (NM_146239, intron 1 of 16)	intron (NM_146239, intron 1 of 16)	28212.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	49.0	32.0	46.5	21.5	3.0	16.5
Merged-chr19-37696671-4	chr19	37696151	37697151	+	658.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1157.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	4.0	3.0	1.0	4.0	2.5	1.0
Merged-chr7-45009613-2	chr7	45009073	45010073	+	658.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008422, intron 6 of 10)	intron (NM_001008422, intron 6 of 10)	2914.0	NR_106021	102466218.0		NR_106021	ENSMUSG00000098839	Mir7054	Gm27557|mmu-mir-7054	microRNA 7054	ncRNA	7.0	10.0	7.5	0.0	0.0	1.5
Merged-chr2-32919287-2	chr2	32918787	32919787	+	658.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_146119, intron 6 of 13)	intron (NM_146119, intron 6 of 13)	41968.0	NM_199302	227738.0	Mm.248037	NM_199302	ENSMUSG00000026792	Lrsam1	-	leucine rich repeat and sterile alpha motif containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-88869634-3	chr11	88869146	88870146	+	658.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126433, intron 3 of 4)	intron (NR_126433, intron 3 of 4)	-5060.0	NM_001042541	11640.0	Mm.2969	NM_009648	ENSMUSG00000018428	Akap1	AKAP121|AKAP84|Akap|C76494|C81186|DAKAP1|S-AKAP84	A kinase (PRKA) anchor protein 1	protein-coding	8.0	5.0	1.0	1.5	2.0	1.0
Merged-chr19-61263756-2	chr19	61263256	61264256	+	658.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR33|LTR|ERVK	-35338.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0.0	0.5	0.0	0.0	2.5	0.0
Merged-chr18-23845309-2	chr18	23844809	23845809	+	658.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 3 of 7)	intron (NM_001162941, intron 3 of 7)	41339.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-59397151-3	chr14	59396649	59397649	+	658.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001320725, intron 14 of 23)	intron (NM_001320725, intron 14 of 23)	-3637.0	NM_001164289	628705.0	Mm.479244	NM_001164289	ENSMUSG00000091144	Phf11c	EG628705|Gm6907|Phf11	PHD finger protein 11C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83049027-2	chr6	83048527	83049527	+	658.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106007)	promoter-TSS (NR_106007)	-684.0	NR_106007	102465630.0		NR_106007	ENSMUSG00000099035	Mir7040	Gm27489|mmu-mir-7040	microRNA 7040	ncRNA	0.0	0.0	3.0	0.0	0.0	0.5
Merged-chr18-65272286-3	chr18	65271737	65272737	+	658.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037294, intron 12 of 12)	intron (NM_001037294, intron 12 of 12)	23376.0	NR_029600	387231.0		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25433731-3	chr10	25433214	25434214	+	658.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013511, intron 1 of 19)	intron (NM_013511, intron 1 of 19)	25346.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-72082610-3	chr9	72082105	72083105	+	658.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011544, intron 3 of 20)	intron (NM_011544, intron 3 of 20)	28596.0	NM_001253862	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0.0	0.0	1.5	0.0	0.0	3.5
Merged-chr12-106055913-3	chr12	106055421	106056421	+	658.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029843, intron 6 of 13)	intron (NM_001029843, intron 6 of 13)	45658.0	NM_001029843	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	0.0	4.0	0.0	11.0	0.0	7.0
Merged-chr11-117390342-4	chr11	117389823	117390823	+	658.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-24066.0	NR_132097	105827746.0	Mm.388009	NR_132097	ENSMUSG00000086588	Gm11729	-	predicted gene 11729	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55535450-2	chr4	55534954	55535954	+	658.06665	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2979.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	8.5	1.0	9.0	11.5	4.5	7.0
Merged-chr6-88136341-4	chr6	88135842	88136842	+	658.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32084.0	NR_105795	102465196.0		NR_105795	ENSMUSG00000099095	Mir6376	Gm27778|mmu-mir-6376	microRNA 6376	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100604661-2	chr12	100604161	100605161	+	658.041626	f1_balb.idr|f1_c57bl6.idr	intron (NM_153587, intron 5 of 17)	intron (NM_153587, intron 5 of 17)	-83839.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-10973785-4	chr4	10973287	10974287	+	658.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	33832.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	14.5	17.0	5.5	5.0	1.5	1.5
Merged-chr11-116098086-1	chr11	116097586	116098586	+	658.0	f1_balb.idr	Intergenic	Intergenic	-11091.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	0.0	1.5	0.0	0.5	1.0	0.0
Merged-chr14-54432313-1	chr14	54431813	54432813	+	658.0	f1_c57bl6.idr	intron (NM_008608, intron 1 of 9)	CpG	715.0	NM_008608	17387.0	Mm.280175	NM_008608	ENSMUSG00000000957	Mmp14	AI325305|MMP-X1|MT-MMP-1|MT1-MMP|sabe	matrix metallopeptidase 14 (membrane-inserted)	protein-coding	0.0	4.0	1.5	0.0	0.0	0.0
Merged-chr18-61076681-2	chr18	61076181	61077181	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008809, intron 15 of 22)	intron (NM_008809, intron 15 of 22)	-28891.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119001425-2	chr8	119000925	119001925	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019707, intron 6 of 13)	PB1D10|SINE|Alu	-343113.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-189877862-1	chr1	189877362	189878362	+	658.0	f1_balb.idr	Intergenic	B3A|SINE|B2	44429.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	0.0	0.5	0.0	0.5	6.0	1.0
Merged-chr2-31476853-2	chr2	31476353	31477353	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_002687, intron 2 of 15)	intron (NR_002687, intron 2 of 15)	6545.0	NR_002687	432466.0	Mm.333323	NR_002687	ENSMUSG00000046687	Gm5424	EG432466	argininosuccinate synthase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10315074-1	chr17	10314574	10315574	+	658.0	f0_balb.idr	intron (NM_021881, intron 1 of 6)	intron (NM_021881, intron 1 of 6)	4287.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-69145336-2	chr14	69144836	69145836	+	658.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26466.0	NM_010920	18092.0	Mm.390691	NM_010920	ENSMUSG00000044186	Nkx2-6	AV044928|Nkx-2.6|Nkx2.6|Tix|tinman	NK2 homeobox 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87248622-1	chr6	87248122	87249122	+	658.0	f0_balb.idr	intron (NM_054041, intron 10 of 17)	intron (NM_054041, intron 10 of 17)	87153.0	NM_054041	69538.0	Mm.232525	NM_054041	ENSMUSG00000033420	Antxr1	2310008J16Rik|2810405N18Rik|Antrx1|Tem8	anthrax toxin receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-12384550-2	chr5	12384050	12385050	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028882, intron 1 of 17)	intron (NM_028882, intron 1 of 17)	1384.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5682401-2	chr17	5681901	5682901	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 2 of 8)	RSINE1|SINE|B4	-116256.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110654805-2	chr9	110654305	110655305	+	658.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183276)	promoter-TSS (NM_183276)	-644.0	NM_183276	235627.0	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-82876891-1	chr4	82876391	82877391	+	658.0	f0_balb.idr	Intergenic	Intergenic	8260.0	NM_009887	12622.0	Mm.6780	NM_009887	ENSMUSG00000038192	Cer1	Cerl|Cerl1|Cerr1|cer-1	cerberus 1, DAN family BMP antagonist	protein-coding	1.5	2.0	0.5	0.0	0.0	5.0
Merged-chr2-9881316-1	chr2	9880816	9881816	+	658.0	f0_balb.idr	promoter-TSS (NR_024257)	promoter-TSS (NR_024257)	70.0	NR_024257	381347.0	Mm.441450	NR_024257		4930412O13Rik	Gm10853	RIKEN cDNA 4930412O13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17343230-2	chr10	17342730	17343730	+	658.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F|LINE|L1	-247448.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115380240-2	chr6	115379740	115380740	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 1 of 7)	RLTR20A4|LTR|ERVK	17891.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11368484-3	chr19	11368022	11369022	+	658.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6966.0	NM_001310331	666907.0		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55216604-2	chr13	55216104	55217104	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008739, intron 2 of 22)	intron (NM_008739, intron 2 of 22)	6822.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0.5	0.5	4.0	0.5	3.0	3.0
Merged-chr19-6531991-2	chr19	6531491	6532491	+	658.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001205235, exon 22 of 22)	exon (NM_001205235, exon 22 of 22)	11079.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-89340192-2	chr7	89339692	89340692	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 2 of 14)	MLT1J-int|LTR|ERVL-MaLR	-1405.0	NM_001360745	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-48997721-2	chr7	48997221	48998221	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	38648.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-66994749-2	chr17	66994243	66995243	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 7 of 32)	intron (NM_001357625, intron 7 of 32)	31492.0	NR_049205	100885844.0		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	3.5	0.0	3.5	0.0	0.0	0.0
Merged-chr2-122117170-2	chr2	122116663	122117663	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145531, intron 1 of 39)	intron (NM_145531, intron 1 of 39)	1223.0	NM_145531	214585.0	Mm.222303	NM_145531	ENSMUSG00000033396	Spg11	6030465E24Rik|A330015I11|C530005A01Rik	SPG11, spatacsin vesicle trafficking associated	protein-coding	20.0	12.0	12.0	2.0	10.0	9.0
Merged-chr2-69720286-1	chr2	69719786	69720786	+	658.0	f1_c57bl6.idr	Intergenic	Intergenic	-2802.0	NM_001081086	228005.0	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	16.5	48.5	21.0	11.0	47.5	7.5
Merged-chr17-87971476-2	chr17	87970976	87971976	+	658.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3574.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80137745-2	chr10	80137245	80138245	+	658.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195268)	promoter-TSS (NM_001195268)	-358.0	NM_001195268	100503659.0	Mm.485395	NM_015761	ENSMUSG00000035640	Cbarp	9630008F14|Dos|R29144/1	calcium channel, voltage-dependent, beta subunit associated regulatory protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-146457350-2	chr4	146456850	146457850	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085522, intron 1 of 3)	RMER17C-int|LTR|ERVK	8320.0	NM_001085522	433791.0	Mm.276881	NM_001085522	ENSMUSG00000070605	Zfp992	Gm13251	zinc finger protein 992	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127294127-2	chr10	127293627	127294627	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007837, intron 2 of 3)	intron (NM_007837, intron 2 of 3)	3334.0	NM_001290183	13198.0	Mm.110220	NM_007837	ENSMUSG00000025408	Ddit3	CHOP-10|CHOP10|chop|gadd153	DNA-damage inducible transcript 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118293720-2	chr11	118293220	118294220	+	658.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3476.0	NM_001033528	72344.0	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30278142-1	chr7	30277642	30278642	+	658.0	f1_balb.idr	intron (NR_152437, intron 1 of 32)	B1_Mur1|SINE|Alu	-1952.0	NR_144498	108167416.0	Mm.471845	NR_144498		LOC108167416	-	uncharacterized LOC108167416	ncRNA	0.0	8.5	12.0	3.0	8.5	12.5
Merged-chr19-46600063-1	chr19	46599563	46600563	+	658.0	f1_balb.idr	intron (NM_146099, intron 1 of 3)	intron (NM_146099, intron 1 of 3)	957.0	NM_146099	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	23.5	33.0	35.5	5.0	55.5	29.5
Merged-chr5-148535083-1	chr5	148534583	148535583	+	658.0	f0_balb.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	16590.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0.0	0.0	0.5	3.0	0.5	0.5
Merged-chr8-71606291-1	chr8	71605791	71606791	+	658.0	f1_balb.idr	intron (NM_001166213, intron 13 of 14)	B3|SINE|B2	-4733.0	NM_146211	234407.0	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	0.0	0.5	0.0	3.5	1.5	0.0
Merged-chr9-45302749-2	chr9	45302249	45303249	+	658.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16351.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95627672-1	chr3	95627172	95628172	+	658.0	f1_c57bl6.idr	intron (NM_001026212, intron 2 of 2)	intron (NM_001026212, intron 2 of 2)	2692.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	4.5	0.0	3.5	5.0	5.0	2.5
Merged-chr6-91718708-1	chr6	91718208	91719208	+	658.0	f0_balb.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	34641.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-87107899-2	chr7	87107399	87108399	+	658.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	111434.0	NM_001105190	621430.0	Mm.469903	NM_001105190	ENSMUSG00000090362	Vmn2r79	EG621430	vomeronasal 2, receptor 79	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-12164591-1	chr12	12164091	12165091	+	658.0	f1_balb.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-97548.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0.5	5.5	0.0	3.0	2.0	0.0
Merged-chr5-113839020-2	chr5	113838520	113839520	+	658.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-8519.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	6.5	2.0	0.5	4.0	1.5	0.5
Merged-chr15-57974879-2	chr15	57974379	57975379	+	658.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11024.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103827087-2	chr14	103826587	103827587	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276296, intron 1 of 7)	intron (NM_001276296, intron 1 of 7)	16614.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20646702-2	chr9	20646202	20647202	+	658.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_153857)	TTS (NR_153857)	1899.0	NR_153859	66177.0	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114665710-2	chr11	114665210	114666210	+	658.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2833.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-15542589-1	chr4	15542089	15543089	+	658.0	f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	276769.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-22247875-2	chr2	22247375	22248375	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_148413, intron 3 of 19)	intron (NM_148413, intron 3 of 19)	20372.0	NM_148413	667663.0	Mm.330033	NM_148413	ENSMUSG00000025716	Myo3a	9030416P08Rik	myosin IIIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34017069-2	chr10	34016569	34017569	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025614, intron 1 of 6)	intron (NM_025614, intron 1 of 6)	2547.0	NM_025614	66521.0	Mm.28528	NM_025614	ENSMUSG00000019782	Rwdd1	0710001K08Rik|2610002D06Rik|2700069A07Rik|IH1	RWD domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125158330-1	chr5	125157830	125158830	+	658.0	f0_balb.idr	intron (NM_001253905, intron 1 of 42)	intron (NM_001253905, intron 1 of 42)	20884.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0.0	0.0	1.5	2.0	2.0	1.5
Merged-chr18-37875104-1	chr18	37874604	37875604	+	658.0	f1_balb.idr	intron (NM_007858, intron 16 of 26)	intron (NM_007858, intron 16 of 26)	-20444.0	NR_105945	102465592.0		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181593564-2	chr2	181593064	181594064	+	658.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1103.0	NM_001164597	269401.0	Mm.386888	NM_001164597	ENSMUSG00000000823	Zfp512b	Gm632|Znf512b	zinc finger protein 512B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-74519523-2	chr10	74519023	74520023	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142736, intron 25 of 32)	(TA)n|Simple_repeat|Simple_repeat	-447654.0	NM_010311	14687.0	Mm.32595	NM_010311	ENSMUSG00000040009	Gnaz	AI847979|Gz	guanine nucleotide binding protein, alpha z subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-103175001-1	chr9	103174501	103175501	+	658.0	f0_balb.idr	intron (NM_173781, intron 7 of 7)	intron (NM_173781, intron 7 of 7)	27064.0	NM_009275	20818.0	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	1.0	0.0	1.0	0.0	4.0	0.5
Merged-chr4-134123392-2	chr4	134122892	134123892	+	658.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045571, exon 9 of 14)	non-coding (NR_045571, exon 9 of 14)	5361.0	NM_080559	73723.0	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	0.0	2.0	0.0	0.0	0.0	0.0
Merged-chr16-11824257-1	chr16	11823757	11824757	+	658.0	f0_c57.idr	intron (NM_146067, intron 3 of 3)	intron (NM_146067, intron 3 of 3)	44555.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50200879-1	chr11	50200379	50201379	+	658.0	f0_balb.idr	TTS (NM_026543)	TTS (NM_026543)	9941.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-43848524-2	chr10	43848024	43849024	+	658.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22617.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64111157-2	chr15	64110657	64111657	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010026, intron 25 of 30)	intron (NM_010026, intron 25 of 30)	-50709.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	11.0	5.0	7.5	11.0	5.0	8.5
Merged-chr2-180641943-2	chr2	180641443	180642443	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360335, intron 1 of 5)	intron (NM_001360335, intron 1 of 5)	748.0	NM_178254	277353.0	Mm.473700	NM_178254	ENSMUSG00000038932	Tcfl5	Figlb|Sosf1	transcription factor-like 5 (basic helix-loop-helix)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34928148-2	chr18	34927648	34928648	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144866, intron 2 of 10)	intron (NM_144866, intron 2 of 10)	3855.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-7005779-2	chr3	7005279	7006279	+	658.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-360825.0	NM_008862	18767.0	Mm.3193	NM_008862	ENSMUSG00000027499	Pkia	AI415001|PKIalpha	protein kinase inhibitor, alpha	protein-coding	1.0	0.0	0.0	0.5	0.0	0.0
Merged-chr2-71340214-2	chr2	71339714	71340714	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 3 of 17)	intron (NM_172436, intron 3 of 17)	27340.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-84867584-2	chr13	84867084	84868084	+	658.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-321801.0	NM_001347587	66671.0	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr2-27726426-2	chr2	27725926	27726926	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	(T)n|Simple_repeat|Simple_repeat	15843.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91045013-1	chr1	91044513	91045513	+	658.0	f0_balb.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-8431.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-89855568-2	chr16	89855068	89856068	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 11 of 27)	intron (NM_009384, intron 11 of 27)	-37216.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3534203-2	chr11	3533703	3534703	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159284, intron 3 of 21)	B1_Mur3|SINE|Alu	5089.0	NM_013870	29856.0	Mm.188516	NM_013870	ENSMUSG00000020439	Smtn	smsmo	smoothelin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8835214-2	chr4	8834714	8835714	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 14 of 36)	intron (NM_001355382, intron 14 of 36)	83890.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52703461-2	chr6	52702961	52703961	+	658.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10268.0	NM_025816	52440.0	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-77327992-3	chr2	77327482	77328482	+	658.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-47390.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-99236002-2	chr6	99235502	99236502	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	30513.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-77033480-2	chr16	77032980	77033980	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 1 of 23)	intron (NM_013918, intron 1 of 23)	19411.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6696455-3	chr2	6695937	6696937	+	658.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	Lx8b|LINE|L1	25225.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120608547-2	chr8	120608047	120609047	+	658.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_197988)	TTS (NM_197988)	-19472.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0.0	0.0	0.0	0.0	1.0	0.5
Merged-chr15-5009787-1	chr15	5009287	5010287	+	658.0	f0_balb.idr	intron (NM_001243837, intron 12 of 17)	intron (NM_001243837, intron 12 of 17)	53986.0	NM_001243837	109828.0	Mm.208034	NM_001243837	ENSMUSG00000079105	C7	A530026G17|Gm1238	complement component 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16672530-1	chr1	16672030	16673030	+	658.0	f1_c57bl6.idr	intron (NM_027415, intron 2 of 2)	intron (NM_027415, intron 2 of 2)	7339.0	NM_026392	70397.0	Mm.194225	NM_026392	ENSMUSG00000025940	Tmem70	1110020A09Rik|2210416J16Rik	transmembrane protein 70	protein-coding	0.0	1.5	2.0	0.0	0.0	0.0
Merged-chr18-44659080-1	chr18	44658580	44659580	+	658.0	f0_balb.idr	intron (NM_001085373, intron 3 of 18)	intron (NM_001085373, intron 3 of 18)	-2585.0	NR_026853	626275.0	Mm.427116	NR_026853	ENSMUSG00000097610	A930012L18Rik	-	RIKEN cDNA A930012L18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr3-141477005-1	chr3	141476505	141477505	+	658.0	f0_balb.idr	intron (NM_001293561, intron 1 of 16)	intron (NM_001293561, intron 1 of 16)	11441.0	NM_009472	22253.0	Mm.24430	NM_009472	ENSMUSG00000059921	Unc5c	B130051O18Rik|Unc5h3|rcm	unc-5 netrin receptor C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-58599828-2	chr2	58599328	58600328	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289660, intron 1 of 7)	intron (NM_001289660, intron 1 of 7)	32494.0	NM_001289660	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-85494967-1	chr17	85494467	85495467	+	658.0	f0_balb.idr	Intergenic	Intergenic	123429.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42750910-1	chr19	42750410	42751410	+	658.0	f1_balb.idr	intron (NM_029011, intron 1 of 15)	intron (NM_029011, intron 1 of 15)	1865.0	NM_029011	74580.0	Mm.329858	NM_029011	ENSMUSG00000060224	Pyroxd2	3830409H07Rik|4833409A17Rik	pyridine nucleotide-disulphide oxidoreductase domain 2	protein-coding	4.5	4.5	5.5	0.0	2.5	2.0
Merged-chr11-96073298-1	chr11	96072798	96073798	+	658.0	f1_balb.idr	intron (NM_007506, intron 4 of 4)	intron (NM_007506, intron 4 of 4)	2333.0	NM_001161419	11951.0	Mm.258	NM_007506	ENSMUSG00000006057	Atp5g1	-	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9)	protein-coding	0.0	0.0	0.5	0.0	0.5	0.0
Merged-chr4-114998179-2	chr4	114997679	114998679	+	658.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1939.0	NM_001304559	20460.0	Mm.3988	NM_009185	ENSMUSG00000028718	Stil	Sil	Scl/Tal1 interrupting locus	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25571692-3	chr9	25571185	25572185	+	658.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 3 of 7)	intron (NM_026189, intron 3 of 7)	90088.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129480871-2	chr2	129480371	129481371	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177653, intron 1 of 6)	MTB|LTR|ERVL-MaLR	55731.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	22.5	30.5	13.5	18.0	17.5	19.5
Merged-chr5-111058729-1	chr5	111058229	111059229	+	658.0	f1_balb.idr	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	54585.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	0.0	3.0	1.5	0.0	0.0	0.5
Merged-chr16-73591154-2	chr16	73590654	73591654	+	657.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	750913.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130696539-2	chr4	130696039	130697039	+	657.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356566, intron 2 of 17)	RLTR16B_MM|LTR|ERVK	33182.0	NM_001356564	80912.0	Mm.440206	NM_030722	ENSMUSG00000028580	Pum1	AA517475|Pumm|mKIAA0099	pumilio RNA-binding family member 1	protein-coding	0.0	0.0	0.5	3.0	0.0	0.0
Merged-chr12-32144776-2	chr12	32144334	32145334	+	657.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63504.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	7.5	8.5	0.5	12.5	6.0	0.0
Merged-chr13-5938170-3	chr13	5937661	5938661	+	657.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	76672.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91255945-2	chr2	91255445	91256445	+	657.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289678)	promoter-TSS (NM_001289678)	-220.0	NM_001289677	80708.0	Mm.236650	NM_028733	ENSMUSG00000027257	Pacsin3	4921507A02Rik|6330413E15Rik|AW413130	protein kinase C and casein kinase substrate in neurons 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172511732-2	chr1	172511219	172512219	+	657.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9411.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	1.5	0.0	5.0	0.0	1.0	2.0
Merged-chr1-130550678-2	chr1	130550178	130551178	+	657.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78928.0	NM_009581	22789.0	Mm.4644	NM_009581	ENSMUSG00000042554	Zp3r	AV264399|SP56	zona pellucida 3 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32655812-2	chr2	32655312	32656312	+	657.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146348, intron 1 of 14)	intron (NM_001146348, intron 1 of 14)	3483.0	NR_035479	100316776.0		NR_035479	ENSMUSG00000093336	Mir1954	mmu-mir-1954	microRNA 1954	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109273888-2	chr4	109273388	109274388	+	657.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6387.0	NM_007943	13858.0	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166700565-2	chr2	166700065	166701065	+	657.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	13267.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-51180511-2	chr17	51180011	51181011	+	657.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1159.0	NM_001285991	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142445794-2	chr5	142445294	142446294	+	657.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 2 of 8)	intron (NM_199068, intron 2 of 8)	-18137.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3879143-2	chr19	3878621	3879621	+	657.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271496, intron 3 of 11)	B2_Mm2|SINE|B2	26109.0	NM_016921	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-29844730-3	chr5	29844220	29845220	+	657.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108784.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-62880438-3	chr13	62879963	62880963	+	657.727783	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019395, intron 1 of 6)	intron (NM_019395, intron 1 of 6)	7819.0	NM_019395	14121.0	Mm.423078	NM_019395	ENSMUSG00000069805	Fbp1	Fbp-2|Fbp2|Fbp3	fructose bisphosphatase 1	protein-coding	0.0	7.5	2.5	8.5	2.5	4.5
Merged-chr12-17239075-3	chr12	17238526	17239526	+	657.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27569.0	NM_027959	71853.0	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	1.0	13.5	3.0	0.0	0.0	0.0
Merged-chr10-40529884-3	chr10	40529388	40530388	+	657.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-40474.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35437962-1	chr2	35437462	35438462	+	657.666687	f0_balb.idr	intron (NM_010283, intron 1 of 8)	MIRb|SINE|MIR	23487.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155611507-3	chr4	155611014	155612014	+	657.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177186, intron 3 of 8)	intron (NM_177186, intron 3 of 8)	10098.0	NM_177186	320541.0	Mm.306018	NM_177186	ENSMUSG00000042202	Slc35e2	A530082C11Rik|AI957035	solute carrier family 35, member E2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-99202543-3	chr11	99202025	99203025	+	657.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28492.0	NM_020618	57376.0	Mm.379086	NM_020618	ENSMUSG00000037935	Smarce1	2810417B20Rik|5830412H02Rik|9030408N19Rik|Baf27	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding	1.5	0.0	1.5	0.0	0.0	0.0
Merged-chr3-9610548-2	chr3	9610048	9611048	+	657.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133218)	promoter-TSS (NM_133218)	-463.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56751649-3	chr17	56751154	56752154	+	657.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008738, exon 3 of 3)	exon (NM_008738, exon 3 of 3)	5894.0	NM_008738	18188.0	Mm.8074	NM_008738	ENSMUSG00000039481	Nrtn	NTN	neurturin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-65038654-2	chr12	65038154	65039154	+	657.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_177806, intron 1 of 13)	intron (NM_177806, intron 1 of 13)	2320.0	NM_177806	328110.0	Mm.283339	NM_177806	ENSMUSG00000035597	Prpf39	Srcs1	pre-mRNA processing factor 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90539136-1	chr2	90538636	90539636	+	657.666687	f0_balb.idr	intron (NM_008982, intron 1 of 23)	L2a|LINE|L2	41511.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	22.5	14.0	27.0	13.0	56.0	26.5
Merged-chr5-110639711-3	chr5	110639208	110640208	+	657.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13674.0	NM_153570	100608.0	Mm.29960	NM_153570	ENSMUSG00000033294	Noc4l	AI326906	NOC4 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47505771-2	chr14	47505263	47506263	+	657.666687	f1_balb.idr|f1_c57bl6.idr	intron (NR_027414, intron 2 of 5)	ORR1D2|LTR|ERVL-MaLR	33202.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	28.5	46.5	17.5	5.5	22.5	2.5
Merged-chr2-75846446-4	chr2	75845947	75846947	+	657.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172666, intron 1 of 19)	B1_Mus1|SINE|Alu	14270.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32579013-2	chr11	32578513	32579513	+	657.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 4 of 18)	intron (NM_009288, intron 4 of 18)	45747.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr8-26154742-2	chr8	26154242	26155242	+	657.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3427.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97309076-2	chr7	97308576	97309576	+	657.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010248)	TTS (NM_010248)	16888.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	1.0	0.0	0.0	0.5	5.0	3.0
Merged-chr14-77867946-2	chr14	77867450	77868450	+	657.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_025384, intron 1 of 5)	intron (NM_025384, intron 1 of 5)	6967.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	14.5	28.5	5.5	8.0	16.0	3.0
Merged-chr3-51226102-2	chr3	51225602	51226602	+	657.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009834, intron 1 of 2)	B1_Mur2|SINE|Alu	1655.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108825965-2	chr9	108825469	108826469	+	657.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359573)	promoter-TSS (NM_001359573)	-76.0	NM_001359573	107934.0	Mm.39945	NM_080437	ENSMUSG00000023473	Celsr3	Adgrc3|Fmi1|flamingo|mKIAA0812	cadherin, EGF LAG seven-pass G-type receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64670968-2	chr17	64670468	64671468	+	657.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 8 of 21)	L1MA8|LINE|L1	69319.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49247158-2	chr7	49246707	49247707	+	657.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 1 of 37)	intron (NM_175272, intron 1 of 37)	1018.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37542723-3	chr1	37542212	37543212	+	657.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1696.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-75676067-3	chr16	75675578	75676578	+	657.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83187.0	NM_198302	224344.0	Mm.273214	NM_198302	ENSMUSG00000032940	Rbm11	A330018F01	RNA binding motif protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-144908877-2	chr7	144908393	144909393	+	657.56665	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-6207.0	NM_001357868	72284.0	Mm.273049	NM_028184	ENSMUSG00000031072	Oraov1	2210010N10Rik|TAOS1	oral cancer overexpressed 1	protein-coding	2.0	6.0	1.0	0.0	1.0	3.5
Merged-chr1-136707583-3	chr1	136707086	136708086	+	657.533325	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037986, intron 2 of 4)	ORR1B2|LTR|ERVL-MaLR	11375.0	NR_037986	100503474.0	Mm.428276	NR_037986		Platr22	Gm16880	pluripotency associated transcript 22	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124128004-2	chr5	124127504	124128504	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289472, intron 14 of 24)	intron (NM_001289472, intron 14 of 24)	11896.0	NM_144509	65105.0	Mm.29430	NM_144509	ENSMUSG00000029404	Arl6ip4	AA408210|AA408365|Aip-4|Srp25	ADP-ribosylation factor-like 6 interacting protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167710766-2	chr2	167710266	167711266	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19589.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67260453-2	chr10	67259953	67260953	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	24828.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-107403078-2	chr14	107402578	107403578	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-916558.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87645856-2	chr1	87645356	87646356	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	25544.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44352236-2	chr7	44351736	44352736	+	657.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001034115, exon 24 of 25)	exon (NM_001034115, exon 24 of 25)	22794.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132786231-1	chr4	132785731	132786731	+	657.5	f0_c57.idr	exon (NM_001033308, exon 4 of 6)	exon (NM_001033308, exon 4 of 6)	10133.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111465921-2	chr12	111465421	111466421	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC4a|LINE|L1	19902.0	NM_001033248	212539.0	Mm.81916	NM_001033248	ENSMUSG00000010529	Gm266	-	predicted gene 266	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11082204-2	chr4	11081704	11082704	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-5999.0	NM_001085493	76947.0	Mm.275265	NM_001085493	ENSMUSG00000050323	Ndufaf6	2310030N02Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-37137312-2	chr14	37136812	37137812	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-1990.0	NM_078478	66092.0	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95976632-2	chr15	95976132	95977132	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	102921.0	NR_126493	402773.0	Mm.210567	NM_001033483	ENSMUSG00000078925	D030018L15Rik	-	nuclear receptor coactivator 2 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106621241-2	chr11	106620741	106621741	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8311.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr7-6167904-2	chr7	6167404	6168404	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4609.0	NM_028316	72667.0	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24521612-2	chr17	24521112	24522112	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172113, intron 1 of 20)	intron (NM_001172113, intron 1 of 20)	6326.0	NM_153792	224619.0	Mm.275150	NM_153792	ENSMUSG00000052752	Traf7	RFWD1	TNF receptor-associated factor 7	protein-coding	1.0	8.5	0.0	0.0	4.0	2.0
Merged-chr8-3225911-2	chr8	3225411	3226411	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330056, intron 2 of 21)	intron (NM_001330056, intron 2 of 21)	53706.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-84524023-2	chr11	84523523	84524523	+	657.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008498, exon 1 of 5)	exon (NM_008498, exon 1 of 5)	1511.0	NM_008498	16869.0	Mm.4965	NM_008498	ENSMUSG00000018698	Lhx1	Lim1	LIM homeobox protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126947941-2	chr8	126947441	126948441	+	657.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172762, exon 11 of 11)	3' UTR (NM_172762, exon 11 of 11)	-2020.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90437220-2	chr2	90436707	90437707	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 23 of 23)	MTEa|LTR|ERVL-MaLR	36567.0	NM_146263	258330.0	Mm.330392	NM_146263	ENSMUSG00000082980	Olfr1274-ps	GA_x5J8B7W2BV0-3116-4045|MOR228-4|MOR228-5|Olfr1274	olfactory receptor 1274, pseudogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51943356-2	chr13	51942856	51943856	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96681.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101912417-2	chr11	101911917	101912917	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18063.0	NM_010791	17285.0	Mm.3404	NM_010791	ENSMUSG00000001493	Meox1	AI385561|D330041M02Rik|Mox-1|Mox1	mesenchyme homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99212669-2	chr10	99212169	99213169	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50562.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-185206347-2	chr1	185205847	185206847	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163754, intron 1 of 34)	L2a|LINE|L2	2179.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr1-91049334-2	chr1	91048834	91049834	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-4110.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-8684577-2	chr16	8684077	8685077	+	657.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001324517)	TTS (NM_001324517)	3807.0	NM_001324517	436336.0	Mm.357666	NM_001324517		Gm5767	EG436336|Gm43786	predicted gene 5767	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59819870-2	chr15	59819370	59820370	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24911.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	21.5	48.5	61.0	23.5	30.0	27.5
Merged-chr1-34386729-4	chr1	34386215	34387215	+	657.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C|LTR|ERVK	46484.0	NR_039562	100628580.0		NR_039562	ENSMUSG00000092852	Mir5103	mir-5103|mmu-mir-5103|mu-mir-5103	microRNA 5103	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43463458-2	chr7	43462958	43463958	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290316, intron 1 of 9)	intron (NM_001290316, intron 1 of 9)	225.0	NM_001290316	75690.0	Mm.30200	NM_001290316	ENSMUSG00000070604	Vsig10l	-	V-set and immunoglobulin domain containing 10 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-39797793-2	chr15	39797293	39798293	+	657.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045788, exon 2 of 3)	non-coding (NR_045788, exon 2 of 3)	748.0	NR_045788	100503072.0	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	-	predicted gene 16291	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-44199407-2	chr5	44198907	44199907	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173764, intron 3 of 13)	intron (NM_173764, intron 3 of 13)	27199.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143459278-2	chr7	143458778	143459778	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001354981, intron 2 of 3)	CpG-13764	1772.0	NM_009876	12577.0	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167489255-2	chr2	167488755	167489755	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356523, intron 1 of 3)	MT2B2|LTR|ERVL	-3390.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19882498-2	chr7	19881998	19882998	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177036, intron 4 of 6)	intron (NM_177036, intron 4 of 6)	5467.0	NM_177036	319930.0	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-83446039-2	chr9	83445539	83446539	+	657.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_102437, exon 2 of 3)	non-coding (NR_102437, exon 2 of 3)	-4912.0	NM_029434	75782.0	Mm.199698	NM_027448	ENSMUSG00000032258	Lca5	4930431B11Rik|5730406O13Rik|AV274874|ORF64	Leber congenital amaurosis 5 (human)	protein-coding	3.0	0.5	0.0	0.0	2.0	1.5
Merged-chr8-25107687-2	chr8	25107187	25108187	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_155282, intron 1 of 1)	intron (NR_155282, intron 1 of 1)	5508.0	NR_155282	74744.0	Mm.117802	NR_155282		5830408C22Rik	2700026D01Rik	RIKEN cDNA 5830408C22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54883405-2	chr11	54882905	54883905	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	17022.0	NM_008248	15254.0	Mm.425	NM_008248	ENSMUSG00000020267	Hint1	AA673479|Hint|Ipk1|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143817209-4	chr5	143816698	143817698	+	657.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-54664.0	NM_013557	15467.0	Mm.389709	NM_013557	ENSMUSG00000029613	Eif2ak1	HCR|Hri	eukaryotic translation initiation factor 2 alpha kinase 1	protein-coding	0.0	3.5	0.0	7.5	2.5	0.5
Merged-chr7-25758644-2	chr7	25758144	25759144	+	657.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001190974, exon 19 of 19)	3' UTR (NM_001190974, exon 19 of 19)	-3885.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-123393907-2	chr7	123393407	123394407	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025304, intron 1 of 10)	MER67A|LTR|ERV1	-13910.0	NM_001355050	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191995598-2	chr1	191995098	191996098	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3036.0	NR_039566	100628582.0		NR_039566	ENSMUSG00000093003	Mir3473c	mmu-mir-3473c	microRNA 3473c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25262465-2	chr7	25261965	25262965	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5234.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131507435-2	chr2	131506935	131507935	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177840, intron 1 of 3)	intron (NM_001177840, intron 1 of 3)	15573.0	NM_001177838	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117819359-2	chr10	117818859	117819859	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 5 of 7)	intron (NM_024457, intron 5 of 7)	26615.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39645701-2	chr18	39645201	39646201	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127796.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38129305-2	chr16	38128805	38129805	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 1 of 11)	MTC|LTR|ERVL-MaLR	-40045.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	10.0	5.5	11.5	3.0	6.5	13.5
Merged-chr4-154897624-2	chr4	154897124	154898124	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025582, intron 3 of 6)	intron (NM_025582, intron 3 of 6)	1419.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52156689-2	chr13	52156189	52157189	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59948.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55868085-2	chr16	55867585	55868585	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134457, intron 2 of 5)	intron (NM_001134457, intron 2 of 5)	27194.0	NM_001134457	385658.0	Mm.310635	NM_001134457	ENSMUSG00000075033	Nxpe3	Fam55c|Gm1752|Gm611	neurexophilin and PC-esterase domain family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94128024-2	chr8	94127524	94128524	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9180.0	NM_008631	17752.0	Mm.1536	NM_008631	ENSMUSG00000031757	Mt4	MT-IV	metallothionein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76899211-2	chr16	76898711	76899711	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111670.0	NR_040573	76601.0	Mm.396217	NR_040573	ENSMUSG00000100857	1700041M19Rik	-	RIKEN cDNA 1700041M19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134828962-2	chr6	134828537	134829537	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1162.0	NM_177687	232430.0	Mm.267010	NM_177687	ENSMUSG00000032652	Crebl2	AI046348|B230205M03	cAMP responsive element binding protein-like 2	protein-coding	15.5	44.0	37.0	16.0	28.5	19.5
Merged-chr12-102499761-1	chr12	102499261	102500261	+	657.5	f0_balb.idr	Intergenic	Intergenic	29851.0	NM_013747	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	5.5	3.5	2.0	6.5	16.5	4.0
Merged-chr13-43725892-3	chr13	43725397	43726397	+	657.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9106.0	NR_046022	622552.0	Mm.375036	NR_046022	ENSMUSG00000110016	Gm20751	-	predicted gene, 20751	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120975215-3	chr4	120974687	120975687	+	657.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133716, intron 6 of 9)	intron (NM_133716, intron 6 of 9)	-1865.0	NR_105982	102465614.0		NR_105982	ENSMUSG00000106436	Mir7015	mmu-mir-7015	microRNA 7015	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58366567-3	chr13	58366070	58367070	+	657.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11623.0	NM_175214	75050.0	Mm.385742	NM_175214	ENSMUSG00000060176	Kif27	4930517I18Rik	kinesin family member 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95293020-2	chr3	95292520	95293520	+	657.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133858, intron 6 of 9)	intron (NM_133858, intron 6 of 9)	10085.0	NM_199475	75007.0	Mm.279287	NM_133858	ENSMUSG00000038712	Mindy1	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|Fam63a|cI-40|mKIAA1390|ni	MINDY lysine 48 deubiquitinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137779723-2	chr5	137779223	137780223	+	657.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_027242, exon 3 of 4)	exon (NM_027242, exon 3 of 4)	819.0	NM_027242	69871.0	Mm.276058	NM_027242	ENSMUSG00000029725	Ppp1r35	2010007H12Rik|2010011D20Rik|AL024004	protein phosphatase 1, regulatory subunit 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-39820667-2	chr5	39820167	39821167	+	657.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-176036.0	NM_010474	15476.0	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181737796-3	chr2	181737297	181738297	+	657.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22107.0	NM_001318924	18389.0	Mm.285075	NM_011012	ENSMUSG00000027584	Oprl1	KOR-3|KOR3|LC132|MOR-C|NOP|ORGC|ORL1|Oprl|XOR1|morc	opioid receptor-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-95598867-3	chr1	95598361	95599361	+	657.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009183, intron 4 of 4)	intron (NM_009183, intron 4 of 4)	68733.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-113772176-3	chr9	113771655	113772655	+	657.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114347, intron 5 of 39)	intron (NM_001114347, intron 5 of 39)	-21175.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	2.0	11.0	8.0	0.5	10.0	3.0
Merged-chr17-56338012-3	chr17	56337503	56338503	+	657.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172132, intron 1 of 22)	intron (NM_172132, intron 1 of 22)	11953.0	NM_001357909	193796.0	Mm.45047	NM_172132	ENSMUSG00000024201	Kdm4b	4732474L06Rik|Jmjd2b	lysine (K)-specific demethylase 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67931906-3	chr18	67931399	67932399	+	657.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1274.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107313824-1	chr4	107313324	107314324	+	657.333313	f0_balb.idr	promoter-TSS (NM_145550)	promoter-TSS (NM_145550)	-539.0	NM_145550	230584.0	Mm.29118	NM_145550	ENSMUSG00000057375	Yipf1	C030002N13Rik	Yip1 domain family, member 1	protein-coding	16.0	28.0	31.0	52.0	73.5	80.0
Merged-chr8-72132017-2	chr8	72131517	72132517	+	657.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3275.0	NM_001001491	326618.0	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	1.0	0.0	2.0	8.0	0.0	4.5
Merged-chr12-75634014-3	chr12	75633515	75634515	+	657.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028203, intron 1 of 1)	RMER10B|LTR|ERVL	-2266.0	NR_038063	665931.0	Mm.341719	NR_038063		Rplp2-ps1	Gm7852	ribosomal protein, large P2, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-116996393-3	chr10	116995903	116996903	+	657.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007583, intron 4 of 9)	intron (NM_001007583, intron 4 of 9)	10089.0	NM_001007583	382427.0	Mm.339322	NM_001007583	ENSMUSG00000020169	Best3	Vmd2l3|mBest4	bestrophin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20125926-1	chr13	20125426	20126426	+	657.333313	f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	RLTRETN_Mm|LTR|ERVK	35419.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	7.0	0.0	4.0	0.0	13.5	0.0
Merged-chr7-27185218-2	chr7	27184718	27185718	+	657.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4069.0	NM_019394	12587.0	Mm.262447	NM_019394	ENSMUSG00000089661	Mia	CD-RAP|Cdrap|Mia1	melanoma inhibitory activity	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110269291-3	chr5	110268830	110269830	+	657.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028273, intron 1 of 5)	intron (NM_028273, intron 1 of 5)	569.0	NM_028273	72542.0	Mm.61682	NM_028273	ENSMUSG00000029500	Pgam5	2610528A17Rik	phosphoglycerate mutase family member 5	protein-coding	10.5	61.5	31.5	28.0	32.0	54.0
Merged-chr2-71845374-2	chr2	71844874	71845874	+	657.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008397, intron 20 of 25)	ORR1A2|LTR|ERVL-MaLR	-27850.0	NM_172665	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	0.0	6.0	0.5	0.0	1.0	2.5
Merged-chr19-3847121-2	chr19	3846621	3847621	+	657.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4652.0	NM_001271496	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122191199-2	chr3	122190699	122191699	+	657.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54358.0	NM_008129	14630.0	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24637338-2	chr10	24636838	24637838	+	657.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008813)	TTS (NM_008813)	41896.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36403382-2	chr18	36402882	36403882	+	657.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026027)	TTS (NM_026027)	51113.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-118168507-2	chr13	118168027	118169027	+	657.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	218725.0	NM_021556	59054.0	Mm.143810	NM_021556	ENSMUSG00000021731	Mrps30	2610020A16Rik|AA968347|PAP|Pdcd9	mitochondrial ribosomal protein S30	protein-coding	8.5	1.0	4.5	0.0	0.0	0.5
Merged-chr9-120015636-2	chr9	120015136	120016136	+	657.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011724, exon 3 of 3)	3' UTR (NM_011724, exon 3 of 3)	7962.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69925448-2	chr8	69924948	69925948	+	657.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 3 of 12)	intron (NM_001286450, intron 3 of 12)	-22890.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	3.5	3.5	6.5	4.0	3.0	2.5
Merged-chr13-55468027-2	chr13	55467527	55468527	+	657.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001030296, intron 1 of 2)	intron (NM_001030296, intron 1 of 2)	3760.0	NM_001030296	432763.0	Mm.315457	NM_001030296	ENSMUSG00000034686	Prr7	XM_484263	proline rich 7 (synaptic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166773218-2	chr2	166772718	166773718	+	657.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20549.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83044058-3	chr17	83043563	83044563	+	657.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045094, intron 2 of 3)	intron (NR_045094, intron 2 of 3)	34162.0	NR_045094	100503434.0	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-72290136-3	chr2	72289622	72290622	+	657.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 1 of 19)	intron (NM_023057, intron 1 of 19)	4421.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19558388-3	chr10	19557884	19558884	+	657.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33565.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	13.5	12.0	13.0	14.5	21.0	13.0
Merged-chr12-85287199-4	chr12	85286734	85287734	+	657.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-1357.0	NM_172414	72350.0	Mm.158810	NM_172414	ENSMUSG00000045064	Zc2hc1c	2810002I04Rik|AV046379|Fam164c	zinc finger, C2HC-type containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64150348-2	chr13	64149848	64150848	+	657.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361047, intron 1 of 5)	intron (NM_001361047, intron 1 of 5)	2025.0	NM_001361047	238673.0	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8965869-2	chr19	8965369	8966369	+	657.099976	f1_balb.idr|f1_c57bl6.idr	exon (NM_197993, exon 9 of 9)	exon (NM_197993, exon 9 of 9)	-1172.0	NM_026007	67160.0	Mm.247762	NM_026007	ENSMUSG00000071644	Eef1g	2610301D06Rik|AA407312|EF1G	eukaryotic translation elongation factor 1 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-129829643-2	chr3	129829143	129830143	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026578, intron 2 of 6)	intron (NM_026578, intron 2 of 6)	1753.0	NM_026578	68147.0	Mm.24873	NM_026578	ENSMUSG00000028010	Gar1	AA409823|AI326794|C430047J18Rik|Nola1	GAR1 ribonucleoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-169919418-2	chr1	169918918	169919918	+	657.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9521.0	NM_001033185	78465.0	Mm.291078	NM_001033185	ENSMUSG00000070532	Ccdc190	1700084C01Rik	coiled-coil domain containing 190	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64735120-2	chr1	64734620	64735620	+	657.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_022721, exon 2 of 2)	exon (NM_022721, exon 2 of 2)	2630.0	NM_001042659	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-157459375-1	chr1	157458875	157459875	+	657.0	f1_c57bl6.idr	intron (NM_001033284, intron 2 of 9)	intron (NM_001033284, intron 2 of 9)	807.0	NM_001356419	226527.0	Mm.215960	NM_001033284	ENSMUSG00000033488	Cryzl2	-	crystallin zeta like 2	protein-coding	6.0	6.5	6.0	2.0	2.0	2.0
Merged-chr9-32906454-2	chr9	32905954	32906954	+	657.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131058, exon 4 of 4)	non-coding (NR_131058, exon 4 of 4)	22512.0	NR_131058	330917.0	Mm.488283	NR_131058		Gm27162	A430016B06	predicted gene 27162	ncRNA	2.5	0.0	0.5	1.0	0.0	0.0
Merged-chr15-102460702-2	chr15	102460202	102461202	+	657.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001170911, exon 3 of 4)	exon (NM_001170911, exon 3 of 4)	1532.0	NM_025385	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98208480-2	chr7	98207980	98208980	+	657.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9005.0	NM_001081167	272411.0	Mm.98333	NM_001081167	ENSMUSG00000074004	B3gnt6	BC039789|Core-3|Core3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-35795508-2	chr5	35795044	35796044	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177678, intron 1 of 19)	intron (NM_177678, intron 1 of 19)	37664.0	NM_001177698	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	5.5	0.0	0.5	2.5	2.0	0.5
Merged-chr7-122207448-3	chr7	122206939	122207939	+	657.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-12057.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6289947-2	chr11	6289447	6290447	+	657.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1650.0	NM_010956	18293.0	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	4.0	0.0	1.0	1.0	0.0	0.0
Merged-chr6-97147836-2	chr6	97147336	97148336	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175313, intron 2 of 17)	intron (NM_175313, intron 2 of 17)	1047.0	NM_175313	101351.0	Mm.116802	NM_175313	ENSMUSG00000035245	Eogt	A130022J15Rik|AI447490|AW214473|AW259391|Aer61	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding	2.5	1.0	0.0	1.0	1.5	3.0
Merged-chr6-97342621-2	chr6	97342121	97343121	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 8 of 23)	ID_B1|SINE|B4	-89841.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	1.0	0.0	1.0	0.0	0.5	0.5
Merged-chr5-16974508-2	chr5	16974008	16975008	+	657.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	420607.0	NM_001289461	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78648256-1	chr17	78647756	78648756	+	657.0	f1_c57bl6.idr	Intergenic	Intergenic	88304.0	NM_011500	268980.0	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	5.0	12.0	2.5	5.5	0.0	2.5
Merged-chr5-35735027-1	chr5	35734527	35735527	+	657.0	f1_balb.idr	intron (NM_001359895, intron 1 of 17)	intron (NM_001359895, intron 1 of 17)	4960.0	NM_001359895	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73070702-2	chr17	73070202	73071202	+	657.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37283.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-86933174-2	chr16	86932674	86933674	+	657.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126661.0	NR_153789	102635020.0	Mm.132956	NR_153789		Gm32461	-	predicted gene, 32461	ncRNA	7.5	0.0	0.0	10.5	0.0	1.0
Merged-chr11-76398197-2	chr11	76397697	76398697	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008750, intron 1 of 7)	intron (NM_008750, intron 1 of 7)	944.0	NM_008750	18230.0	Mm.27915	NM_008750	ENSMUSG00000020844	Nxn	l11Jus13	nucleoredoxin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89388284-2	chr3	89387784	89388784	+	657.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355206)	promoter-TSS (NM_001355206)	-613.0	NM_001355206	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121266426-1	chr10	121265926	121266926	+	657.0	f0_balb.idr	3' UTR (NM_029057, exon 12 of 12)	3' UTR (NM_029057, exon 12 of 12)	44970.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	0.0	0.0	0.5	0.0	0.0	1.0
Merged-chr9-26001728-2	chr9	26001228	26002228	+	657.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	520131.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-58290306-2	chr4	58289806	58290806	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037128, intron 1 of 14)	intron (NM_001037128, intron 1 of 14)	4344.0	NM_010944	18198.0	Mm.16148	NM_010944	ENSMUSG00000057280	Musk	Mdk4|Mlk|Nsk1|Nsk2|Nsk3	muscle, skeletal, receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-125727458-2	chr10	125726958	125727958	+	657.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-238761.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118106175-2	chr10	118105675	118106675	+	657.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35612.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80827862-1	chr7	80827362	80828362	+	657.0	f0_balb.idr	Intergenic	Intergenic	-24531.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31252032-2	chr14	31251532	31252532	+	657.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360624)	promoter-TSS (NM_001360624)	543.0	NM_027088	104416.0	Mm.3779	NM_027088	ENSMUSG00000021901	Bap1	2300006C11Rik|AA989761|AW553466|mKIAA0272|uch-x4	Brca1 associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97826872-2	chr15	97826372	97827372	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204276, intron 1 of 25)	intron (NM_001204276, intron 1 of 25)	4895.0	NM_019572	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55627690-2	chr16	55627202	55628202	+	657.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	132971.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37581633-3	chr13	37581116	37582116	+	657.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	236271.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	31.5	76.0	54.0	19.5	59.5	24.5
Merged-chr3-88191817-2	chr3	88191317	88192317	+	657.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14032.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128809106-2	chr2	128808606	128809606	+	657.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-9197.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-78850762-2	chr14	78850262	78851262	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027906, intron 1 of 44)	intron (NM_027906, intron 1 of 44)	1584.0	NM_173758	219189.0	Mm.159651	NM_027906	ENSMUSG00000058997	Vwa8	1300010F03Rik|4932416F07Rik|AI957255|Kiaa0564|mKIAA0564	von Willebrand factor A domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67236779-2	chr5	67236279	67237279	+	657.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-23786.0	NM_001285452	67878.0	Mm.23217	NM_028975	ENSMUSG00000037720	Tmem33	1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83	transmembrane protein 33	protein-coding	0.5	2.5	1.5	5.0	0.0	0.5
Merged-chr17-33554385-2	chr17	33553885	33554885	+	657.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172619)	TTS (NM_172619)	-1322.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	3.5	6.5	4.0	8.5	5.0	2.5
Merged-chr3-46174797-1	chr3	46174297	46175297	+	657.0	f1_c57bl6.idr	Intergenic	Intergenic	273144.0	NM_001101479	241989.0	Mm.119234	NM_001101479	ENSMUSG00000090919	Pabpc4l	C330050A14Rik|EG241989	poly(A) binding protein, cytoplasmic 4-like	protein-coding	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr8-20996326-2	chr8	20995826	20996826	+	657.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-29219.0	NM_183253	66298.0	Mm.482941	NM_183253	ENSMUSG00000074447	Defa21	2010016B13Rik|Defcr21	defensin, alpha, 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80042199-2	chr11	80041699	80042699	+	657.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	38792.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101238036-2	chr15	101237536	101238536	+	657.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12850.0	NR_045328	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-70412464-1	chr16	70411964	70412964	+	657.0	f0_balb.idr	intron (NM_028803, intron 3 of 15)	Lx8|LINE|L1	98515.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0.5	5.5	2.5	7.0	6.0	3.0
Merged-chr13-55023391-1	chr13	55022891	55023891	+	657.0	f1_c57bl6.idr	Intergenic	Intergenic	-2006.0	NM_001033245	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	4.5	33.5	8.0	8.0	12.0	15.0
Merged-chr2-181928398-2	chr2	181927898	181928898	+	657.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-62828.0	NM_001205282	672125.0	Mm.489571	NM_001205282	ENSMUSG00000098505	Gm14496	-	predicted gene 14496	protein-coding	0.0	0.5	0.0	0.0	0.5	0.0
Merged-chr14-46917270-1	chr14	46916770	46917770	+	657.0	f1_balb.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	34305.0	NM_001037221	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	5.5	14.0	10.0	14.0	9.0	5.5
Merged-chr2-166070537-2	chr2	166070037	166071037	+	657.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008679, exon 23 of 23)	3' UTR (NM_008679, exon 23 of 23)	77900.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	1.5	1.5	0.0	1.0	1.5	0.0
Merged-chr10-127552589-1	chr10	127552089	127553089	+	657.0	f1_c57bl6.idr	intron (NM_008512, intron 61 of 88)	intron (NM_008512, intron 61 of 88)	-18030.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	1.0	0.0	9.5	14.5	7.5	0.5
Merged-chr11-100415134-2	chr11	100414634	100415634	+	657.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176830)	promoter-TSS (NM_176830)	-315.0	NM_176830	66180.0	Mm.4940	NM_176830	ENSMUSG00000006931	P3h4	1110036O03Rik|AI413214|Leprel4|Sc65	prolyl 3-hydroxylase family member 4 (non-enzymatic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46036571-2	chr19	46036071	46037071	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113408, intron 1 of 10)	B3A|SINE|B2	499.0	NM_001360336	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43286900-3	chr4	43286372	43287372	+	657.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177195, intron 2 of 28)	(TTG)n|Simple_repeat|Simple_repeat	19713.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	44.5	105.5	82.0	44.5	71.0	93.5
Merged-chr3-69700523-2	chr3	69700023	69701023	+	657.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR48|LTR|ERV1	-21532.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135563505-1	chr5	135563005	135564005	+	657.0	f1_balb.idr	promoter-TSS (NM_001013412)	promoter-TSS (NM_001013412)	64.0	NM_001013412	541307.0	Mm.376459	NM_001013412	ENSMUSG00000070464	Ccl26	Ccl26l	chemokine (C-C motif) ligand 26	protein-coding	10.0	0.0	6.5	2.0	3.0	15.5
Merged-chr4-40843841-2	chr4	40843341	40844341	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022305, intron 1 of 5)	B3A|SINE|B2	6297.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80883258-2	chr10	80882758	80883758	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081688, intron 2 of 17)	intron (NM_001081688, intron 2 of 17)	3442.0	NM_001081688	432478.0	Mm.235302	NM_001081688	ENSMUSG00000059406	Tmprss9	Serase-1B	transmembrane protease, serine 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-14905092-2	chr17	14904592	14905592	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175173, intron 17 of 24)	Lx8b|LINE|L1	38032.0	NM_175173	71682.0	Mm.122698	NM_175173	ENSMUSG00000046991	Wdr27	0610012K18Rik	WD repeat domain 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30393166-1	chr16	30392666	30393666	+	657.0	f1_c57bl6.idr	Intergenic	RLTR25B|LTR|ERVK	-4636.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	4.5	0.0	4.0	0.0	5.0	1.0
Merged-chr17-5247366-2	chr17	5246866	5247866	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 5 of 19)	intron (NM_001085355, intron 5 of 19)	171401.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163666620-2	chr2	163666120	163667120	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 2 of 4)	B2_Mm1a|SINE|B2	8162.0	NM_001164053	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-92322699-1	chr13	92322199	92323199	+	657.0	f1_c57bl6.idr	intron (NM_001311120, intron 8 of 23)	MTD|LTR|ERVL-MaLR	-32084.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	6.5	8.5	1.0	15.5	7.5	1.0
Merged-chr5-96853591-1	chr5	96853091	96854091	+	657.0	f1_c57bl6.idr	Intergenic	Intergenic	60206.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	0.0	1.0	1.5	0.0	3.5	0.5
Merged-chr3-142762545-1	chr3	142762045	142763045	+	657.0	f1_balb.idr	Intergenic	Intergenic	-2702.0	NM_145546	229906.0	Mm.271756	NM_145546	ENSMUSG00000028271	Gtf2b	-	general transcription factor IIB	protein-coding	8.5	6.0	2.5	0.5	10.5	2.5
Merged-chr6-134566060-1	chr6	134565560	134566560	+	657.0	f0_balb.idr	intron (NM_008514, intron 1 of 22)	intron (NM_008514, intron 1 of 22)	853.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	38.5	60.5	56.0	26.5	28.5	39.5
Merged-chr4-3080894-1	chr4	3080394	3081394	+	657.0	f1_balb.idr	Intergenic	Intergenic	-91189.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102461797-1	chr12	102461297	102462297	+	657.0	f1_balb.idr	Intergenic	Intergenic	-7337.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	12.0	19.5	13.5	7.0	29.5	16.0
Merged-chr13-52978692-2	chr13	52978192	52979192	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_017373, intron 1 of 1)	CpG	2347.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-93661071-1	chr5	93660571	93661571	+	657.0	f1_balb.idr	intron (NM_001164284, intron 3 of 5)	intron (NM_001164284, intron 3 of 5)	10392.0	NM_001164284	381654.0	Mm.326591	NM_001164284	ENSMUSG00000070686	C87414	-	expressed sequence C87414	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28317221-2	chr17	28316721	28317721	+	657.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163820, exon 4 of 9)	exon (NM_001163820, exon 4 of 9)	3691.0	NM_001163820	72775.0	Mm.201859	NM_028348	ENSMUSG00000007570	Fance	2810451D06Rik|AI415634|AW209126	Fanconi anemia, complementation group E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-137899079-3	chr1	137898575	137899575	+	657.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67380.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97365282-2	chr6	97364782	97365782	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	PB1D9|SINE|Alu	94004.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106416588-2	chr8	106416088	106417088	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011764, intron 1 of 3)	B3A|SINE|B2	1249.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80771180-2	chr7	80770680	80771680	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	32151.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.0	6.5	5.0	15.5	7.0	3.5
Merged-chr17-73917861-2	chr17	73917361	73918361	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 14 of 35)	intron (NM_011723, intron 14 of 35)	32335.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31076524-1	chr17	31076024	31077024	+	657.0	f1_balb.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	18830.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	76.0	147.5	114.5	95.5	234.5	120.0
Merged-chr10-39170359-1	chr10	39169859	39170859	+	657.0	f0_balb.idr	Intergenic	Intergenic	-6565.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-118777062-2	chr3	118776562	118777562	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_170778, intron 4 of 22)	Lx2B|LINE|L1	214882.0	NM_170778	99586.0	Mm.27907	NM_170778	ENSMUSG00000033308	Dpyd	AI315208|DHPDHase|DPD|E330028L06Rik	dihydropyrimidine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-84102769-4	chr7	84102256	84103256	+	656.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-16251.0	NM_030728	80982.0	Mm.160389	NM_030728	ENSMUSG00000052353	Cemip	12H19.01.T7|6330404C01Rik|9930013L23Rik|AY007814|Kiaa1199	cell migration inducing protein, hyaluronan binding	protein-coding	2.5	0.5	1.5	0.0	0.5	0.0
Merged-chr10-127076291-4	chr10	127075785	127076785	+	656.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2622.0	NM_001301014	216439.0	Mm.336761	NM_001033263	ENSMUSG00000025422	Agap2	AGAP-2|Centg1|PIKE|cnt-g1|mKIAA0167	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-62660777-2	chr2	62660277	62661277	+	656.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR34B_MM|LTR|ERVK	-3550.0	NM_145523	227960.0	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167907880-2	chr2	167907380	167908380	+	656.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24447.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-39968876-3	chr15	39968348	39969348	+	656.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6199.0	NR_045719	105976.0	Mm.394885	NR_045719		AU022793	-	expressed sequence AU022793	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14190774-3	chr2	14190276	14191276	+	656.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081310, intron 1 of 3)	intron (NM_001081310, intron 1 of 3)	16252.0	NM_001081310	625286.0	Mm.158781	NM_001081310	ENSMUSG00000061531	Tmem236	2010003H20Rik|Fam23a|Gm613	transmembrane protein 236	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79402257-2	chr15	79401757	79402757	+	656.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_172608, intron 1 of 8)	intron (NM_172608, intron 1 of 8)	662.0	NM_001253817	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	0.0	1.5	5.0	1.5	0.5	4.0
Merged-chr1-179398932-3	chr1	179398434	179399434	+	656.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027188, intron 5 of 11)	intron (NM_027188, intron 5 of 11)	119107.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46657288-3	chr4	46656763	46657763	+	656.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7064.0	NM_198664	381605.0	Mm.331595	NM_198664	ENSMUSG00000039813	Tbc1d2	A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1	TBC1 domain family, member 2	protein-coding	0.0	1.0	1.0	7.5	1.5	2.0
Merged-chr9-61700774-2	chr9	61700274	61701274	+	656.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	213736.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33967473-3	chr16	33966936	33967936	+	656.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009471)	promoter-TSS (NM_009471)	-398.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114311422-3	chr7	114310948	114311948	+	656.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35332.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	0.0	4.5	12.5	3.0	2.0	21.0
Merged-chr8-106307780-4	chr8	106307270	106308270	+	656.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021491, intron 1 of 8)	intron (NM_021491, intron 1 of 8)	25541.0	NR_126090	75044.0	Mm.445896	NR_126090		4930506A18Rik	-	RIKEN cDNA 4930506A18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81286470-2	chr10	81285970	81286970	+	656.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282096)	promoter-TSS (NM_001282096)	-689.0	NM_001282096	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19575481-1	chr10	19574981	19575981	+	656.75	f0_balb.idr	Intergenic	Lx6|LINE|L1	-16468.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	5.5	3.5	10.5	4.0	0.5	6.0
Merged-chr17-5404232-2	chr17	5403732	5404732	+	656.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	14535.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21244776-2	chr9	21244276	21245276	+	656.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_053190, exon 3 of 3)	exon (NM_053190, exon 3 of 3)	3667.0	NM_053190	94226.0	Mm.190619	NM_053190	ENSMUSG00000045087	S1pr5	Edg8|S1P5|lpB4	sphingosine-1-phosphate receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97918229-3	chr15	97917727	97918727	+	656.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9931.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83893793-3	chr7	83893289	83894289	+	656.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023403, intron 1 of 2)	intron (NM_023403, intron 1 of 2)	1789.0	NM_023403	67943.0	Mm.117365	NM_023403	ENSMUSG00000038503	Mesd	2210015O11Rik|AW537813|Mesdc2|mKIAA0081|mesd|msd	mesoderm development LRP chaperone	protein-coding	4.5	8.5	7.5	3.5	2.0	0.5
Merged-chr5-32131815-2	chr5	32131315	32132315	+	656.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4657.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.0	2.5	0.0	0.0	0.0	0.0
Merged-chr3-54601734-2	chr3	54601235	54602235	+	656.666626	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91080.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	28.5	62.5	32.0	0.0	14.5	8.0
Merged-chr16-91384177-2	chr16	91383677	91384677	+	656.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 2 of 7)	intron (NM_001347258, intron 2 of 7)	11394.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138239772-4	chr1	138239275	138240275	+	656.645813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33963.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81383398-2	chr10	81382981	81383981	+	656.599976	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133964)	promoter-TSS (NM_133964)	-947.0	NM_133964	102115.0	Mm.294975	NM_133964	ENSMUSG00000078440	Dohh	1110033C18Rik|AI585913|AL022869|Hlrc1	deoxyhypusine hydroxylase/monooxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-72303710-1	chr7	72303210	72304210	+	656.5	f0_balb.idr	intron (NM_001024703, intron 1 of 22)	Arthur1C|DNA|hAT-Tip100	2885.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66295077-2	chr14	66294577	66295577	+	656.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_038077)	TTS (NR_038077)	-1948.0	NM_029979	66854.0	Mm.43871	NM_029979	ENSMUSG00000022043	Trim35	0710005M05Rik|A430106H13Rik|AW046487|HLS5|Mair|NC8|mKIAA1098	tripartite motif-containing 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120629770-2	chr2	120629279	120630279	+	656.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	20184.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	13.5	47.0	39.0	13.0	47.0	35.0
Merged-chr6-47786651-2	chr6	47786151	47787151	+	656.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17001.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	0.5	1.5	1.5	0.0	2.5	1.5
Merged-chr15-38302908-2	chr15	38302408	38303408	+	656.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2197.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64735698-3	chr17	64735231	64736231	+	656.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 19 of 21)	intron (NM_008549, intron 19 of 21)	-31380.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173733322-1	chr1	173732822	173733822	+	656.5	f0_balb.idr	intron (NM_001204910, intron 3 of 7)	RLTR44C|LTR|ERVK	8487.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	0.0	14.0	5.5	16.0	5.0	7.5
Merged-chr2-153139616-2	chr2	153139116	153140116	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 10 of 12)	(A)n|Simple_repeat|Simple_repeat	-21685.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-3894227-2	chr16	3893727	3894727	+	656.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_153801)	TTS (NR_153801)	9608.0	NM_001290689	74763.0	Mm.28403	NM_029090	ENSMUSG00000005982	Naa60	1200013P24Rik|AI315146|HAT4|Nat15|NatF	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-51204672-2	chr17	51204172	51205172	+	656.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25320.0	NM_001285991	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86753521-2	chr11	86753021	86754021	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	B3|SINE|B2	4046.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10280083-2	chr16	10279583	10280583	+	656.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	33885.0	NM_007929	13731.0	Mm.246009	NM_007929	ENSMUSG00000022505	Emp2	XMP	epithelial membrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29376560-2	chr19	29376060	29377060	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 3 of 6)	intron (NM_021893, intron 3 of 6)	9122.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95021506-2	chr13	95021006	95022006	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172590, intron 12 of 12)	intron (NM_172590, intron 12 of 12)	45162.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-71757078-1	chr9	71756578	71757578	+	656.5	f0_balb.idr	intron (NM_026599, intron 1 of 18)	intron (NM_026599, intron 1 of 18)	14524.0	NM_026599	68178.0	Mm.99961	NM_026599	ENSMUSG00000032232	Cgnl1	4933421H10Rik|9930020M10Rik|AI503810|Jacop	cingulin-like 1	protein-coding	0.0	3.0	1.0	0.0	0.0	1.5
Merged-chr1-127775610-2	chr1	127775110	127776110	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028399, intron 2 of 8)	intron (NM_028399, intron 2 of 8)	1446.0	NM_028399	72949.0	Mm.268672	NM_028399	ENSMUSG00000026349	Ccnt2	2900041I18Rik|C81304|CycT2|CycT2a|CycT2b	cyclin T2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-56948498-2	chr9	56947998	56948998	+	656.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR22_Mus|LTR|ERVK	-2426.0	NM_178374	66069.0	Mm.220984	NM_178374	ENSMUSG00000055334	Snupn	0610031A09Rik|Rnut1|Snupn1	snurportin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18800555-2	chr2	18800055	18801055	+	656.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131254, exon 1 of 1)	non-coding (NR_131254, exon 1 of 1)	1263.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30972555-2	chr16	30972055	30973055	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 3 of 3)	intron (NM_198626, intron 3 of 3)	108877.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	3.5	33.0	13.5	2.0	8.5	2.0
Merged-chr11-114685588-2	chr11	114685109	114686109	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	10141.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0.0	2.0	3.0	0.0	2.0	4.5
Merged-chr3-95685762-2	chr3	95685262	95686262	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301705, intron 1 of 17)	intron (NM_001301705, intron 1 of 17)	2155.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62046065-1	chr18	62045565	62046565	+	656.5	f0_balb.idr	Intergenic	L2a|LINE|L2	92990.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	106.5	194.5	126.0	118.0	202.5	101.5
Merged-chr18-3385189-2	chr18	3384689	3385689	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029402, intron 1 of 20)	B1_Mus2|SINE|Alu	1964.0	NM_029402	71745.0	Mm.291707	NM_029402	ENSMUSG00000024231	Cul2	1300003D18Rik|4932411N15Rik|AI327301|mKIAA4106	cullin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38160281-2	chr6	38159781	38160781	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_194061, intron 10 of 19)	intron (NM_194061, intron 10 of 19)	-35695.0	NM_080467	140494.0	Mm.462308	NM_080467	ENSMUSG00000038600	Atp6v0a4	Atp6n1b|a4	ATPase, H+ transporting, lysosomal V0 subunit A4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-42952579-2	chr4	42952079	42953079	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355439, intron 2 of 4)	intron (NM_001355439, intron 2 of 4)	2183.0	NM_001355440	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11717903-2	chr11	11717403	11718403	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301865, intron 3 of 6)	intron (NM_001301865, intron 3 of 6)	27726.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99066477-2	chr9	99065977	99066977	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 11 of 23)	RMER1B|Other|Other	-30787.0	NM_001080776	382097.0	Mm.293727	NM_001080776	ENSMUSG00000044860	Gm1123	AV052824|CLSP	predicted gene 1123	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40789780-2	chr12	40789260	40790260	+	656.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 31 of 52)	intron (NM_172803, intron 31 of 52)	-234330.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184736152-2	chr1	184735652	184736652	+	656.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3659.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25656257-2	chr9	25655757	25656757	+	656.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	174660.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81179975-2	chr10	81179475	81180475	+	656.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_028549)	TTS (NR_028549)	1014.0	NR_028549	100217454.0		NR_028549	ENSMUSG00000064441	Snord37	MBII-376	small nucleolar RNA, C/D box 37	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21681993-2	chr16	21681493	21682493	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001881, intron 1 of 1)	RLTR30E_MM|LTR|ERV1	12672.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-38180528-2	chr7	38180028	38181028	+	656.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2689.0	NM_001085385	72244.0	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29344353-2	chr19	29343853	29344853	+	656.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9683.0	NM_011272	19773.0	Mm.5033	NM_011272	ENSMUSG00000039097	Rln1	Rln|rlx	relaxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77688610-2	chr11	77688110	77689110	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024205, intron 1 of 3)	intron (NM_001024205, intron 1 of 3)	2471.0	NM_001024205	68564.0	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156178368-2	chr2	156177868	156178868	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133242, intron 2 of 16)	intron (NM_133242, intron 2 of 16)	1212.0	NM_001291115	170791.0	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-40172858-2	chr15	40172358	40173358	+	656.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10251.0	NR_155349	102636151.0	Mm.321976	NR_155349	ENSMUSG00000115367	Gm33301	-	predicted gene, 33301	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98460032-2	chr12	98459532	98460532	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316666, intron 4 of 4)	B3A|SINE|B2	-63812.0	NR_136759	105245437.0	Mm.446375	NR_136759	ENSMUSG00000113613	Gm40893	-	predicted gene, 40893	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-135026391-1	chr6	135025891	135026891	+	656.5	f0_balb.idr	Intergenic	Intergenic	14779.0	NM_026360	67755.0	Mm.166524	NM_026360	ENSMUSG00000030204	Ddx47	4930588A18Rik|C77285	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	protein-coding	0.0	3.0	0.0	0.0	0.0	0.0
Merged-chr8-119756065-2	chr8	119755565	119756565	+	656.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026922, exon 26 of 27)	exon (NM_026922, exon 26 of 27)	22351.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-47260538-2	chr4	47260038	47261038	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 9 of 39)	intron (NM_009928, intron 9 of 39)	52526.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-107540882-2	chr14	107540382	107541382	+	656.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-1054362.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122609212-2	chr8	122608712	122609712	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001193645, intron 1 of 11)	intron (NM_001193645, intron 1 of 11)	2275.0	NM_001193645	50917.0	Mm.1786	NM_016722	ENSMUSG00000015027	Galns	mFLJ00319	galactosamine (N-acetyl)-6-sulfate sulfatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-22950288-2	chr2	22949788	22950788	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 8 of 10)	intron (NM_001077190, intron 8 of 10)	54766.0	NM_001355467	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-14200506-3	chr10	14199966	14200966	+	656.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	234087.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-67061734-2	chr13	67061234	67062234	+	656.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166218)	promoter-TSS (NM_001166218)	-564.0	NM_001166218	78251.0	Mm.297247	NM_001166218	ENSMUSG00000090641	Zfp712	4921504N20Rik|mszf31|mszf89	zinc finger protein 712	protein-coding	8.0	22.0	19.0	13.5	11.5	15.0
Merged-chr11-118462473-2	chr11	118461973	118462973	+	656.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7478.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4479962-2	chr7	4479462	4480462	+	656.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001290416, exon 20 of 20)	3' UTR (NM_001290416, exon 20 of 20)	-9078.0	NR_028416	320749.0	Mm.396688	NR_028416		D630041G03Rik	-	RIKEN cDNA D630041G03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94158526-2	chr11	94157991	94158991	+	656.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52963.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	2.5	0.0	1.0	0.0	2.0	1.0
Merged-chr6-87400085-3	chr6	87399576	87400576	+	656.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11141.0	NM_026860	68888.0	Mm.46387	NM_026860	ENSMUSG00000030048	Gkn3	1190003M12Rik	gastrokine 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71948869-3	chr8	71948404	71949404	+	656.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2162.0	NM_001164581	234413.0	Mm.334607	NM_001164581	ENSMUSG00000052446	Zfp961	A230105L22Rik|BC065788|mszf37|mszf55-2	zinc finger protein 961	protein-coding	5.0	45.5	16.0	16.0	26.0	20.5
Merged-chr8-84782887-3	chr8	84782388	84783388	+	656.444458	f0_balb.idr|f1_balb.idr	intron (NM_001081982, intron 1 of 9)	intron (NM_001081982, intron 1 of 9)	-8519.0	NM_001297601	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	0.0	8.5	0.0	10.0	5.5	15.0
Merged-chr1-88281556-2	chr1	88281056	88282056	+	656.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-3977.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35052557-2	chr17	35052090	35053090	+	656.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_033444, intron 2 of 5)	intron (NM_033444, intron 2 of 5)	2347.0	NM_033444	114584.0	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	47.0	95.5	48.5	31.5	62.5	34.0
Merged-chr11-72866689-4	chr11	72866181	72867181	+	656.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001045536, exon 24 of 55)	exon (NM_001045536, exon 24 of 55)	70455.0	NM_001045536	195018.0	Mm.272030	NM_001045536	ENSMUSG00000055670	Zzef1	8430405D05Rik|BC051585|C130099L13Rik|C85424|NSPA|mKIAA0399	zinc finger, ZZ-type with EF hand domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70079732-2	chr14	70079232	70080232	+	656.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001289925, exon 3 of 3)	exon (NM_001289925, exon 3 of 3)	1937.0	NM_001289927	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49685363-2	chr16	49684863	49685863	+	656.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13931.0	NM_028680	73916.0	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45020597-2	chr19	45020080	45021080	+	656.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130526, intron 1 of 4)	intron (NM_001130526, intron 1 of 4)	2445.0	NM_001130526	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	11.0	9.5	5.5	15.0	7.5	2.5
Merged-chr4-151806876-3	chr4	151806381	151807381	+	656.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195565, intron 3 of 3)	intron (NM_001195565, intron 3 of 3)	54887.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-21117344-3	chr2	21116840	21117840	+	656.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88025.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55830633-3	chr19	55830090	55831090	+	656.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	MTD|LTR|ERVL-MaLR	-64731.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-76350032-3	chr10	76349527	76350527	+	656.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-4736.0	NM_001081419	64451.0	Mm.33183	NM_001081419	ENSMUSG00000020231	Dip2a	4931420H10Rik|AI426328|Dip2|Kiaa0184-hp|mKIAA0184	disco interacting protein 2 homolog A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-92733563-3	chr13	92733075	92734075	+	656.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61243.0	NM_011582	21828.0	Mm.20865	NM_011582	ENSMUSG00000021702	Thbs4	TSP4	thrombospondin 4	protein-coding	2.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58012316-3	chr13	58011815	58012815	+	656.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195075, intron 14 of 16)	intron (NM_001195075, intron 14 of 16)	10885.0	NR_030544	100124491.0		NR_030544	ENSMUSG00000077962	Mir874	Mirn874|mir-874|mmu-mir-874	microRNA 874	ncRNA	0.0	8.0	0.0	0.0	0.0	0.0
Merged-chr3-108232317-3	chr3	108231817	108232817	+	656.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5718.0	NM_008596	17306.0	Mm.316885	NM_008596	ENSMUSG00000027887	Sypl2	AI552439|Mg29	synaptophysin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55474829-1	chr12	55474329	55475329	+	656.333313	f0_balb.idr	Intergenic	Intergenic	17818.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20420065-3	chr11	20419571	20420571	+	656.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB5_1-I_MM-int|LTR|ERVK	-87358.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28434012-2	chr7	28433512	28434512	+	656.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_175021, intron 1 of 12)	intron (NM_175021, intron 1 of 12)	2179.0	NM_175021	233033.0	Mm.54120	NM_175021	ENSMUSG00000109336	Samd4b	BC042901	sterile alpha motif domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98606913-2	chr11	98606413	98607413	+	656.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8622.0	NM_001195544	192852.0	Mm.342821	NM_001195544	ENSMUSG00000086545	Lrrc3c	Gm12	leucine rich repeat containing 3C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25488644-2	chr10	25488144	25489144	+	656.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 11 of 16)	intron (NM_001358754, intron 11 of 16)	47628.0	NM_001195596	100504474.0	Mm.46323	NM_001195596	ENSMUSG00000096546	Smlr1	2010003K15Rik	small leucine-rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-63450466-2	chr17	63449966	63450966	+	656.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 4 of 8)	intron (NM_015794, intron 4 of 8)	50114.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31614927-2	chr15	31614427	31615427	+	656.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356313, intron 5 of 5)	L1MC4|LINE|L1	12811.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98695037-2	chr13	98694537	98695537	+	656.214294	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025606)	promoter-TSS (NM_001025606)	-206.0	NM_001025606	380863.0	Mm.28264	NM_001025606	ENSMUSG00000052485	Tmem171	Gm905	transmembrane protein 171	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17800393-4	chr6	17799871	17800871	+	656.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	intron (NM_022332, intron 1 of 15)	51201.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-17409773-3	chr14	17409285	17410285	+	656.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-251175.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152513713-2	chr1	152513213	152514213	+	656.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111504.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67099976-2	chr10	67099456	67100456	+	656.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2968.0	NM_178606	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-116892634-2	chr2	116892134	116893134	+	656.125	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026104)	TTS (NM_026104)	-7518.0	NR_040336	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-19355617-1	chr9	19355117	19356117	+	656.0	f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	5739.0	NM_146282	258279.0	Mm.377410	NM_146282	ENSMUSG00000058692	Olfr846	MOR149-3	olfactory receptor 846	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37916498-2	chr13	37915998	37916998	+	656.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033615, exon 8 of 10)	non-coding (NR_033615, exon 8 of 10)	27627.0	NM_001177869	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27847184-1	chr17	27846684	27847684	+	656.0	f1_c57bl6.idr	intron (NM_011432, intron 4 of 5)	intron (NM_011432, intron 4 of 5)	7097.0	NM_011432	20630.0	Mm.103949	NM_011432	ENSMUSG00000024217	Snrpc	Snrp1c|U1-C|U1C	U1 small nuclear ribonucleoprotein C	protein-coding	0.0	0.0	0.5	2.0	1.0	0.0
Merged-chr8-120738271-2	chr8	120737771	120738771	+	656.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301811)	promoter-TSS (NM_001301811)	-368.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108937588-2	chr9	108937088	108938088	+	656.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025407, intron 2 of 12)	B4A|SINE|B4	940.0	NM_025407	22273.0	Mm.335460	NM_025407	ENSMUSG00000025651	Uqcrc1	1110032G10Rik	ubiquinol-cytochrome c reductase core protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-20878659-2	chr2	20878159	20879159	+	656.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128084, intron 8 of 24)	intron (NM_001128084, intron 8 of 24)	89062.0	NM_001081364	71435.0	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-89264604-1	chr9	89264104	89265104	+	656.0	f0_balb.idr	Intergenic	L1MB2|LINE|L1	53220.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	1.0	9.0	7.5	2.5	10.5	7.5
Merged-chr2-61583904-2	chr2	61583404	61584404	+	656.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011529, intron 1 of 7)	B4|SINE|B4	5318.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-16180234-2	chr3	16179734	16180734	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17C_Mm|LTR|ERVK	-2931.0	NM_001358043	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163749242-1	chr2	163748742	163749742	+	656.0	f0_balb.idr	intron (NM_001272052, intron 1 of 11)	intron (NM_001272052, intron 1 of 11)	997.0	NM_007398	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143754340-2	chr7	143753840	143754840	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12377.0	NM_024289	79196.0	Mm.21199	NM_024289	ENSMUSG00000037606	Osbpl5	1110006M06Rik|AI462538|ORP5|Obph1|Osbp2	oxysterol binding protein-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19155465-2	chr7	19154965	19155965	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5627.0	NM_026943	107686.0	Mm.29135	NM_026943	ENSMUSG00000040824	Snrpd2	1810009A06Rik|SMD2	small nuclear ribonucleoprotein D2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88509992-2	chr15	88509492	88510492	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90310.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25879814-2	chr17	25879314	25880314	+	656.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001100454, intron 1 of 1)	intron (NM_001100454, intron 1 of 1)	1044.0	NM_001100454	215001.0	Mm.328871	NM_001100454	ENSMUSG00000071192	Wfikkn1	Gasp2|Wfikkn	WAP, FS, Ig, KU, and NTR-containing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32567552-3	chr11	32567053	32568053	+	656.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	34287.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102978845-1	chr15	102978345	102979345	+	656.0	f0_balb.idr	intron (NM_008272, intron 1 of 2)	intron (NM_008272, intron 1 of 2)	1813.0	NM_008272	15427.0	Mm.4765	NM_008272	ENSMUSG00000036139	Hoxc9	Hox-3.2	homeobox C9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128723505-2	chr4	128723005	128724005	+	656.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 8 of 14)	intron (NM_018774, intron 8 of 14)	-4066.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97478527-1	chr6	97478027	97479027	+	656.0	f1_balb.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	9293.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	143.5	346.5	310.0	77.5	242.0	161.0
Merged-chr2-13417359-3	chr2	13416836	13417836	+	656.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081084, intron 27 of 66)	L3|LINE|CR1	74540.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124542586-2	chr5	124542086	124543086	+	656.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019770, intron 1 of 3)	PB1D9|SINE|Alu	1795.0	NM_019770	56334.0	Mm.325307	NM_019770	ENSMUSG00000029390	Tmed2	1110032D12Rik|1810020N21Rik|Rnp24|Sid394|p24beta1	transmembrane p24 trafficking protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-126552143-2	chr6	126551643	126552643	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16588.0	NM_145983	16493.0	Mm.222831	NM_145983	ENSMUSG00000045534	Kcna5	Kv1.5	potassium voltage-gated channel, shaker-related subfamily, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-146834982-2	chr2	146834468	146835468	+	656.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20921.0	NM_001033298	228730.0	Mm.292352	NM_001033298	ENSMUSG00000074749	Kiz	Gm114|Ncrna00153|Plk1s1	kizuna centrosomal protein	protein-coding	0.0	0.0	0.0	0.0	2.5	0.0
Merged-chr3-94478126-1	chr3	94477626	94478626	+	656.0	f1_balb.idr	promoter-TSS (NM_001289616)	promoter-TSS (NM_001289616)	-169.0	NM_001289616	78784.0	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|ETR-1|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	0.0	4.5	1.0	0.0	0.0	2.5
Merged-chr15-76672789-2	chr15	76672289	76673289	+	656.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152559, intron 1 of 8)	intron (NR_152559, intron 1 of 8)	1146.0	NM_033371	73062.0	Mm.322901	NM_033371	ENSMUSG00000033819	Ppp1r16a	2900084E10Rik|Mypt3|R75527	protein phosphatase 1, regulatory (inhibitor) subunit 16A	protein-coding	0.0	2.5	7.5	0.0	4.5	0.0
Merged-chr3-142398360-1	chr3	142397860	142398860	+	656.0	f0_balb.idr	Intergenic	Lx9|LINE|L1	-2664.0	NM_019808	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-57746882-1	chr8	57746382	57747382	+	656.0	f0_balb.idr	Intergenic	L1_Mus2|LINE|L1	-93827.0	NM_144731	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-3547601-1	chr13	3547101	3548101	+	656.0	f1_c57bl6.idr	intron (NM_008112, intron 1 of 10)	B3|SINE|B2	9526.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	5.0	15.5	9.5	13.0	45.0	5.0
Merged-chr16-64819271-3	chr16	64818784	64819784	+	656.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347245, intron 2 of 8)	MTC|LTR|ERVL-MaLR	32439.0	NM_001347245	72020.0	Mm.25960	NM_028059	ENSMUSG00000047141	Zfp654	1600021C16Rik|1810008K20Rik|433036|Gm5488|Znf654	zinc finger protein 654	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146674514-2	chr5	146674014	146675014	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-89275.0	NM_001359057	14738.0	Mm.153539	NM_008151	ENSMUSG00000041468	Gpr12	Gpcr01|Gpcr12|Gpcr20|Gpcr21	G-protein coupled receptor 12	protein-coding	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr5-134315987-2	chr5	134315487	134316487	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger13a|DNA|TcMar-Tigger	-1227.0	NM_010365	14886.0	Mm.261570	NM_010365	ENSMUSG00000060261	Gtf2i	6030441I21Rik|BAP-135|Diws1t|GtfII-I|Spin|TFII-I|WBSCR6	general transcription factor II I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-29676080-1	chr12	29675580	29676580	+	656.0	f1_c57bl6.idr	non-coding (NR_046080, exon 4 of 4)	non-coding (NR_046080, exon 4 of 4)	10365.0	NR_046080	328075.0	Mm.447832	NR_046080	ENSMUSG00000112663	C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA	11.0	5.0	8.5	5.5	0.0	6.5
Merged-chr16-57914788-1	chr16	57914288	57915288	+	656.0	f0_balb.idr	Intergenic	Lx8b|LINE|L1	-160051.0	NM_007739	12837.0	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27128000-1	chr17	27127500	27128500	+	656.0	f1_c57bl6.idr	intron (NM_026063, intron 1 of 3)	intron (NM_026063, intron 1 of 3)	5891.0	NM_026063	67267.0	Mm.272389	NM_026063	ENSMUSG00000024208	Uqcc2	2900010M23Rik|Cbp6|M19|Mnf1	ubiquinol-cytochrome c reductase complex assembly factor 2	protein-coding	1.5	1.0	1.0	1.5	2.5	0.0
Merged-chr15-3293704-3	chr15	3293210	3294210	+	656.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166063, intron 4 of 8)	C-rich|Low_complexity|Low_complexity	9816.0	NM_001166063	100039139.0	Mm.455610	NM_001166063	ENSMUSG00000091119	Ccdc152	-	coiled-coil domain containing 152	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-36051741-1	chr12	36051241	36052241	+	656.0	f0_balb.idr	Intergenic	Intergenic	-9263.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98895185-2	chr10	98894685	98895685	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H1|LTR|ERVL-MaLR	-19457.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-140956919-1	chr4	140956419	140957419	+	656.0	f1_balb.idr	intron (NR_045911, intron 1 of 3)	intron (NR_045911, intron 1 of 3)	983.0	NR_045911	100126227.0	Mm.404073	NR_045911	ENSMUSG00000087698	Gm13031	-	predicted gene 13031	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184771200-1	chr1	184770700	184771700	+	656.0	f0_balb.idr	Intergenic	Intergenic	-38707.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149854577-1	chr4	149854077	149855077	+	656.0	f1_balb.idr	Intergenic	Intergenic	-80310.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0.0	1.5	3.0	0.0	0.0	0.5
Merged-chr1-165668002-2	chr1	165667502	165668502	+	656.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	-33461.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106756396-2	chr1	106755896	106756896	+	656.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027534, intron 1 of 9)	intron (NM_027534, intron 1 of 9)	3346.0	NM_027534	70750.0	Mm.458911	NM_027534	ENSMUSG00000009905	Kdsr	6330410P18Rik|9430079B08Rik|Fvt1	3-ketodihydrosphingosine reductase	protein-coding	1.0	1.0	1.5	0.5	1.0	0.0
Merged-chr19-12722435-2	chr19	12721935	12722935	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	26645.0	NM_029550	64697.0	Mm.218561	NM_029550	ENSMUSG00000024694	Keg1	0610008P16Rik|AI316519|GS4059	kidney expressed gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93271295-1	chr10	93270795	93271795	+	656.0	f0_balb.idr	intron (NM_001322265, intron 2 of 4)	intron (NM_001322265, intron 2 of 4)	39864.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	12.0	8.0	9.5	11.5	17.0	15.5
Merged-chr8-84256694-2	chr8	84256204	84257204	+	656.0	f0_c57.idr|f1_balb.idr	intron (NM_026423, intron 1 of 4)	intron (NM_026423, intron 1 of 4)	620.0	NM_026423	67873.0	Mm.278085	NM_026423	ENSMUSG00000004996	Mri1	2410018C20Rik	methylthioribose-1-phosphate isomerase 1	protein-coding	2.5	11.5	9.5	4.5	6.5	13.5
Merged-chr15-96738128-2	chr15	96737628	96738628	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38400.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80072597-2	chr7	80072097	80073097	+	656.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045695, intron 1 of 2)	intron (NR_045695, intron 1 of 2)	2660.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	3.5	2.5	2.0	9.5	5.5	3.5
Merged-chr3-142605261-2	chr3	142604761	142605761	+	656.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010259, intron 6 of 10)	ID_B1|SINE|B4	10414.0	NM_010259	14468.0	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155101849-1	chr2	155101349	155102349	+	656.0	f0_balb.idr	Intergenic	Intergenic	-1770.0	NR_040634	100504268.0	Mm.410858	NR_040634	ENSMUSG00000087254	2310005A03Rik	-	RIKEN cDNA 2310005A03 gene	ncRNA	5.5	25.0	45.0	6.0	16.5	15.0
Merged-chr13-60644081-1	chr13	60643581	60644581	+	656.0	f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	41870.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	19.0	69.0	30.5	29.0	41.5	36.5
Merged-chr12-69514139-2	chr12	69513643	69514643	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38593.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	45.5	30.0	29.0	19.5	40.0	25.0
Merged-chr11-98793012-2	chr11	98792512	98793512	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2504.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56159488-2	chr17	56158988	56159988	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3003.0	NM_025566	66443.0	Mm.2312	NM_025566	ENSMUSG00000044469	Tnfaip8l1	2600017J23Rik|TIPE1	tumor necrosis factor, alpha-induced protein 8-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135574200-2	chr5	135573700	135574700	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1151.0	NM_001356630	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-15428530-2	chr3	15428030	15429030	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2103.0	NM_001002898	320832.0	Mm.330924	NM_178792	ENSMUSG00000095788	Sirpb1a	9930027N05Rik|SIRP-beta|Sirpb|Sirpb1	signal-regulatory protein beta 1A	protein-coding	0.5	0.5	2.0	0.5	0.5	2.0
Merged-chr7-84212255-3	chr7	84211726	84212726	+	656.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60333.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	5.0	4.0	13.0	0.0	0.0	1.5
Merged-chr9-50548063-1	chr9	50547563	50548563	+	656.0	f1_balb.idr	intron (NM_001359610, intron 2 of 10)	MER34|LTR|ERV1	5599.0	NM_001359610	170752.0	Mm.390149	NM_133217	ENSMUSG00000032066	Bco2	B-diox-II|Bcdo2|Bcmo2|CMO2	beta-carotene oxygenase 2	protein-coding	4.0	2.5	0.5	0.5	0.0	1.0
Merged-chr2-131096258-1	chr2	131095758	131096758	+	656.0	f1_balb.idr	Intergenic	B1F2|SINE|Alu	-9493.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	12.0	17.0	20.0	21.5	23.5	24.0
Merged-chr12-109531797-2	chr12	109531297	109532297	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9199.0	NR_027652	17263.0	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80440577-2	chr7	80440077	80441077	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-35141.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	1.0	5.0	2.0	0.0	0.5	5.5
Merged-chr13-73845713-2	chr13	73845213	73846213	+	656.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347535, intron 2 of 8)	intron (NM_001347535, intron 2 of 8)	1918.0	NM_028186	72293.0	Mm.45506	NM_028186	ENSMUSG00000021567	Nkd2	2210403L10Rik|AW212591|mNkd2	naked cuticle 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119395342-2	chr11	119394842	119395842	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4870.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	4.5	15.0	9.5	12.0	12.0	21.5
Merged-chr4-6222868-1	chr4	6222368	6223368	+	656.0	f1_c57bl6.idr	Intergenic	Intergenic	31763.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	66.0	136.5	149.5	4.0	16.0	2.0
Merged-chr11-86588662-2	chr11	86588162	86589162	+	656.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 10 of 11)	B2_Mm1t|SINE|B2	-4504.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154657612-1	chr2	154657112	154658112	+	656.0	f0_balb.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	586.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	39.5	67.0	42.0	21.0	68.5	48.0
Merged-chr14-73058023-2	chr14	73057523	73058523	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8909.0	NM_001162412	70086.0	Mm.158324	NM_133720	ENSMUSG00000033470	Cysltr2	2300001H05Rik|CYSLT2R|Cltr2|Cyslt2	cysteinyl leukotriene receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122571801-2	chr8	122571301	122572301	+	656.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026014, exon 8 of 10)	exon (NM_026014, exon 8 of 10)	3786.0	NM_026014	67177.0	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	0.0	0.0	1.0	0.0	4.0	0.5
Merged-chr4-53126418-2	chr4	53125918	53126918	+	656.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	33477.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173537343-1	chr2	173536843	173537843	+	656.0	f1_c57bl6.idr	Intergenic	Intergenic	14751.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	1.0	3.5	1.0	0.0	0.0	3.0
Merged-chr7-145294880-2	chr7	145294380	145295380	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6029.0	NM_145379	211577.0	Mm.215151	NM_145379	ENSMUSG00000031070	Mrgprf	BC019711|Mgrc|MrgF	MAS-related GPR, member F	protein-coding	0.0	5.5	1.5	1.0	5.0	1.5
Merged-chr8-117460527-2	chr8	117460027	117461027	+	656.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163262, exon 21 of 21)	3' UTR (NM_001163262, exon 21 of 21)	1262.0	NR_106046	102465653.0		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-142083373-2	chr4	142082873	142083873	+	656.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027137)	promoter-TSS (NR_027137)	-925.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-63803780-2	chr17	63803280	63804280	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60201.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95805520-1	chr8	95805020	95806020	+	656.0	f1_c57bl6.idr	intron (NM_001205226, intron 1 of 48)	intron (NM_001205226, intron 1 of 48)	-1310.0	NR_015574	319960.0	Mm.386996	NR_015574	ENSMUSG00000074136	4930513N10Rik	-	RIKEN cDNA 4930513N10 gene	ncRNA	2.5	1.5	1.5	4.5	1.5	1.5
Merged-chr17-35704692-2	chr17	35704192	35705192	+	656.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007584)	promoter-TSS (NM_007584)	-93.0	NM_007584	12305.0	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	0.0	5.5	0.0	0.0	4.5	1.0
Merged-chr17-29376702-1	chr17	29376202	29377202	+	656.0	f1_c57bl6.idr	intron (NM_001159538, intron 13 of 15)	intron (NM_001159538, intron 13 of 15)	15788.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0.0	1.0	0.0	2.5	2.5	3.5
Merged-chr14-64654018-1	chr14	64653518	64654518	+	656.0	f0_balb.idr	intron (NM_001081177, intron 1 of 39)	intron (NM_001081177, intron 1 of 39)	1487.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	3.0	2.0	10.0	3.0	7.0	2.5
Merged-chr15-103520036-2	chr15	103519536	103520536	+	656.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001285890, exon 2 of 15)	exon (NM_001285890, exon 2 of 15)	5059.0	NM_001285890	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58803727-2	chr1	58803227	58804227	+	656.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080126, intron 1 of 8)	intron (NM_001080126, intron 1 of 8)	1225.0	NM_001277926	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	23.5	69.0	65.5	42.0	75.0	72.5
Merged-chr11-49062207-2	chr11	49061707	49062707	+	656.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145164, intron 1 of 1)	Lx2B2|LINE|L1	2005.0	NM_001145164	100039796.0	Mm.482363	NM_001145164	ENSMUSG00000078921	Tgtp2	TGTP	T cell specific GTPase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53881179-1	chr18	53880679	53881679	+	656.0	f0_balb.idr	intron (NM_152809, intron 1 of 12)	Tigger20a|DNA|TcMar-Tigger	19066.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	3.0	4.5	3.5	3.0	5.5	3.5
Merged-chr16-4642788-2	chr16	4642288	4643288	+	656.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139307, intron 1 of 1)	intron (NM_139307, intron 1 of 1)	2843.0	NM_139307	246154.0	Mm.482140	NM_139307	ENSMUSG00000039646	Vasn	2610528G05Rik|Atia|Slitl2	vasorin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-174344856-1	chr2	174344356	174345356	+	656.0	f0_balb.idr	intron (NM_001077507, intron 5 of 10)	intron (NM_001077507, intron 5 of 10)	14767.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	1.5	0.0	1.0	1.5	5.0	5.5
Merged-chr18-11195228-1	chr18	11194728	11195728	+	656.0	f0_balb.idr	Intergenic	Intergenic	-142661.0	NR_105022	68434.0	Mm.57626	NR_105022	ENSMUSG00000097222	1010001N08Rik	Gata6as	RIKEN cDNA 1010001N08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82998403-2	chr15	82997903	82998903	+	655.875	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001271411, exon 6 of 6)	3' UTR (NM_001271411, exon 6 of 6)	24735.0	NM_028728	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71360244-2	chr8	71359717	71360717	+	655.875	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001142323, exon 39 of 39)	3' UTR (NM_001142323, exon 39 of 39)	-6631.0	NM_001145780	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	5.0	5.0	6.5	7.5	3.0	6.5
Merged-chr2-14944195-2	chr2	14943695	14944695	+	655.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001309519, intron 2 of 12)	intron (NM_001309519, intron 2 of 12)	70539.0	NM_001309519	12296.0	Mm.313930	NM_023116	ENSMUSG00000057914	Cacnb2	AW060387|CAB2|Cavbeta2|Cchb2	calcium channel, voltage-dependent, beta 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45561661-2	chr17	45561037	45562037	+	655.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304956, intron 5 of 5)	B1_Mus1|SINE|Alu	-2399.0	NM_001357105	73836.0	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	0.0	0.0	0.0	0.5	3.0	2.5
Merged-chr15-101337785-2	chr15	101337285	101338285	+	655.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31567.0	NR_035462	100316694.0		NR_035462	ENSMUSG00000088459	Mir1941	mmu-mir-1941	microRNA 1941	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34479268-3	chr6	34478736	34479736	+	655.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007563, intron 1 of 2)	intron (NM_007563, intron 1 of 2)	2880.0	NM_007563	12183.0	Mm.282863	NM_007563	ENSMUSG00000038871	Bpgm	AI323730|AL022789|C86192	2,3-bisphosphoglycerate mutase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134156362-4	chr6	134155885	134156885	+	655.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	120685.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.0	3.5	0.0	0.0	1.5	0.0
Merged-chr8-88653519-3	chr8	88653024	88654024	+	655.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 2 of 12)	intron (NM_145857, intron 2 of 12)	6177.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	3.0	0.0	1.0	0.0	4.0	2.0
Merged-chr16-5445967-3	chr16	5445444	5446444	+	655.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-189988.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106540392-2	chr11	106539892	106540892	+	655.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_198292, intron 5 of 11)	intron (NM_198292, intron 5 of 11)	39401.0	NR_030703	100216537.0		NR_030703	ENSMUSG00000065126	Snord104	-	small nucleolar RNA, C/D box 104	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75088245-2	chr15	75087748	75088748	+	655.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	23689.0	NM_001357693	100041546.0	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	2.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137719766-2	chr4	137719280	137720280	+	655.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081155, intron 15 of 24)	intron (NM_001081155, intron 15 of 24)	-4681.0	NR_138592	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	1.5	0.0	0.0	6.5	0.0	0.0
Merged-chr11-85261247-2	chr11	85260747	85261747	+	655.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26081.0	NR_028329	654810.0	Mm.209580	NR_028329	ENSMUSG00000085628	Appbp2os	D630032N06Rik	amyloid beta precursor protein (cytoplasmic tail) binding protein 2, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79955882-2	chr10	79955382	79956382	+	655.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007880)	TTS (NM_007880)	-4270.0	NM_175450	216156.0	Mm.35828	NM_175450	ENSMUSG00000035754	Wdr18	2310012I10Rik|AU044733|AW122032	WD repeat domain 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36307298-2	chr18	36306798	36307798	+	655.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7197.0	NM_001267796	109169.0	Mm.426423	NM_001267796	ENSMUSG00000110185	Igip	6330403M23Rik	IgA inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23755927-2	chr17	23755356	23756356	+	655.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_153791, exon 7 of 7)	exon (NM_153791, exon 7 of 7)	6620.0	NR_015472	638247.0	Mm.382600	NR_015472	ENSMUSG00000097006	9530082P21Rik	E030034P13Rik	RIKEN cDNA 9530082P21 gene	ncRNA	0.0	2.0	0.5	0.5	1.0	1.0
Merged-chr4-148085845-2	chr4	148085345	148086345	+	655.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301281, intron 1 of 4)	intron (NM_001301281, intron 1 of 4)	2219.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50205015-2	chr11	50204515	50205515	+	655.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290769, intron 5 of 7)	intron (NM_001290769, intron 5 of 7)	5805.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-20256241-2	chr5	20255706	20256706	+	655.75	f0_c57.idr|f1_balb.idr	intron (NM_001170746, intron 6 of 22)	intron (NM_001170746, intron 6 of 22)	348688.0	NM_015823	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-123149956-2	chr3	123149456	123150456	+	655.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_080451, intron 1 of 4)	intron (NM_080451, intron 1 of 4)	86193.0	NM_080451	118449.0	Mm.34359	NM_080451	ENSMUSG00000050315	Synpo2	1110069I04Rik|2310068J10Rik|9530006G20Rik|AI848603|Myo	synaptopodin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92402722-3	chr16	92402212	92403212	+	655.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-2634.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-63659887-3	chr1	63659392	63660392	+	655.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081658, intron 9 of 14)	intron (NM_001081658, intron 9 of 14)	27035.0	NM_001081658	241073.0	Mm.297680	NM_001081658	ENSMUSG00000069085	Dytn	Gm215	dystrotelin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10745282-3	chr17	10744779	10745779	+	655.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	94912.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146451507-3	chr3	146451027	146452027	+	655.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028836, intron 1 of 5)	ORR1B1|LTR|ERVL-MaLR	1060.0	NM_001293672	74245.0	Mm.45396	NM_028836	ENSMUSG00000028189	Ctbs	2210401K11Rik|CTB	chitobiase, di-N-acetyl-	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4293725-2	chr19	4293225	4294225	+	655.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 2 of 20)	B1_Mus1|SINE|Alu	-10588.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91258112-3	chr1	91257652	91258652	+	655.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355764, intron 3 of 10)	intron (NM_001355764, intron 3 of 10)	7586.0	NM_001355764	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	14.0	8.0	4.0	14.0	8.0	4.0
Merged-chr12-91750942-3	chr12	91750430	91751430	+	655.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	MLT1N2|LTR|ERVL-MaLR	35506.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52060774-3	chr6	52060268	52061268	+	655.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42181.0	NR_110440	102635415.0	Mm.333063	NR_110440	ENSMUSG00000085412	Halr1	Gm15055|Haunt|Linchoxa1|linc-Evx1|linc-Hoxa1|linc1547	Hoxa adjacent long noncoding RNA 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79930751-2	chr10	79930251	79931251	+	655.666626	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007880, exon 2 of 9)	5' UTR (NM_007880, exon 2 of 9)	3410.0	NM_001288625	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-10005838-2	chr8	10005338	10006338	+	655.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347309)	promoter-TSS (NM_001347309)	-629.0	NM_001347309	24099.0	Mm.28835	NM_033622	ENSMUSG00000031497	Tnfsf13b	BAFF|BLyS|D8Ertd387e|TALL-1|TALL1|THANK|TNFSF20|Tnlg7a|zTNF4	tumor necrosis factor (ligand) superfamily, member 13b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-86110334-2	chr10	86109834	86110834	+	655.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_038024, intron 2 of 2)	intron (NR_038024, intron 2 of 2)	14480.0	NR_038024	78170.0	Mm.444790	NR_038024	ENSMUSG00000112493	4930486F22Rik	-	RIKEN cDNA 4930486F22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-23419414-3	chr5	23418902	23419902	+	655.6190190000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14951.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-26779569-3	chr10	26779052	26780052	+	655.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	7040.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-116731934-2	chr8	116731434	116732434	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 1 of 6)	intron (NM_029441, intron 1 of 6)	1057.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70067574-2	chr14	70067074	70068074	+	655.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9871.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119436036-1	chr9	119435536	119436536	+	655.5	f0_balb.idr	3' UTR (NM_001313757, exon 11 of 11)	3' UTR (NM_001313757, exon 11 of 11)	-8924.0	NR_153320	208194.0	Mm.101578	NM_172456	ENSMUSG00000042787	Exog	AW557704|ENGL-B|ENGL-a|Endogl1|Endogl2|Engl|Engla|Englb	endo/exonuclease (5'-3'), endonuclease G-like	protein-coding	0.5	2.0	0.5	0.5	2.0	0.5
Merged-chr15-102976854-2	chr15	102976354	102977354	+	655.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008272)	promoter-TSS (NM_008272)	-178.0	NM_008272	15427.0	Mm.4765	NM_008272	ENSMUSG00000036139	Hoxc9	Hox-3.2	homeobox C9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20888829-2	chr9	20888329	20889329	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145610, intron 2 of 10)	RSINE1|SINE|B4	654.0	NM_145610	235036.0	Mm.2930	NM_145610	ENSMUSG00000004100	Ppan	A230087P06Rik|SSF1	peter pan homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51653745-2	chr3	51653245	51654245	+	655.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7434.0	NM_174995	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70473263-2	chr12	70472763	70473763	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_037248, intron 2 of 4)	B1_Mus2|SINE|Alu	20109.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	7.0	17.5	10.0	4.5	5.5	7.0
Merged-chr19-18620590-2	chr19	18620090	18621090	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	11223.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-77419180-2	chr8	77418680	77419680	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 7 of 22)	B4A|SINE|B4	-97876.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99340632-1	chr5	99340132	99341132	+	655.5	f0_balb.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-87705.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5920850-2	chr19	5920350	5921350	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026772, intron 1 of 1)	intron (NM_026772, intron 1 of 1)	3966.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-58535976-1	chr4	58535476	58536476	+	655.5	f0_c57.idr	intron (NM_010336, intron 1 of 3)	intron (NM_010336, intron 1 of 3)	17317.0	NM_172989	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	12.5	13.5	4.0	12.0	2.0	0.5
Merged-chr1-131463979-2	chr1	131463479	131464479	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	ID_B1|SINE|B4	63382.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-87022927-2	chr10	87022427	87023427	+	655.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14985.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-143390011-2	chr4	143389511	143390511	+	655.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4430.0	NM_031377	83491.0	Mm.190607	NM_031377	ENSMUSG00000041805	Pramel1	-	preferentially expressed antigen in melanoma-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123796405-2	chr9	123795905	123796905	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110253, intron 16 of 17)	intron (NM_001110253, intron 16 of 17)	-10072.0	NM_030712	80901.0	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107908599-2	chr9	107908099	107909099	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_109782, intron 1 of 18)	intron (NR_109782, intron 1 of 18)	1710.0	NM_009074	19882.0	Mm.3901	NM_009074	ENSMUSG00000032584	Mst1r	CD136|CDw136|Fv-2|Fv2|PTK8|Ron|STK	macrophage stimulating 1 receptor (c-met-related tyrosine kinase)	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr5-88644237-2	chr5	88643737	88644737	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359209, intron 14 of 17)	intron (NM_001359209, intron 14 of 17)	31343.0	NM_001098476	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-16807165-2	chr18	16806665	16807665	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007664, intron 1 of 15)	intron (NM_007664, intron 1 of 15)	2081.0	NM_007664	12558.0	Mm.257437	NM_007664	ENSMUSG00000024304	Cdh2	CDHN|N-CAD|Ncad	cadherin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30890386-2	chr5	30889886	30890886	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048192, intron 2 of 16)	intron (NM_001048192, intron 2 of 16)	1052.0	NM_001294262	231093.0	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26239060-2	chr17	26238560	26239560	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	B1_Mus1|SINE|Alu	5182.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	3.0	11.0	0.5	2.0	7.5	1.5
Merged-chr7-12833966-2	chr7	12833487	12834487	+	655.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360576)	promoter-TSS (NM_001360576)	-774.0	NM_022981	65020.0	Mm.292297	NM_022981	ENSMUSG00000058638	Zfp110	2900024E01Rik|N28112|NRIF|Nrif1	zinc finger protein 110	protein-coding	9.5	13.5	9.0	7.0	15.0	7.5
Merged-chr9-40652403-2	chr9	40651903	40652903	+	655.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-33561.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	0.5	3.0	3.0	8.0	33.5	15.5
Merged-chr2-93419285-2	chr2	93418785	93419785	+	655.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001136055, exon 10 of 10)	3' UTR (NM_001136055, exon 10 of 10)	2722.0	NR_105967	102465605.0		NR_105967	ENSMUSG00000099238	Mir7001	Gm27886|mmu-mir-7001	microRNA 7001	ncRNA	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr4-139201050-2	chr4	139200544	139201544	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	6933.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	31.5	85.0	60.0	40.0	102.5	86.5
Merged-chr2-24456986-2	chr2	24456486	24457486	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011040, intron 2 of 11)	intron (NM_011040, intron 2 of 11)	18613.0	NM_011040	18510.0	Mm.2533	NM_011040	ENSMUSG00000026976	Pax8	Pax-8	paired box 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-34404505-2	chr14	34404005	34405005	+	655.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153127)	TTS (NM_153127)	29001.0	NM_153127	105450.0	Mm.272673	NM_153127	ENSMUSG00000041445	Mmrn2	AA986839|ENDOGLYX1|Emilin3|EndoGlyx-1	multimerin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59667061-2	chr4	59666561	59667561	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015681, intron 1 of 3)	intron (NM_001015681, intron 1 of 3)	40850.0	NM_153158	230259.0	Mm.45688	NM_153158	ENSMUSG00000045071	E130308A19Rik	-	RIKEN cDNA E130308A19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80010194-2	chr7	80009694	80010694	+	655.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14620.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.0	0.0	0.0	2.5	0.0	0.0
Merged-chr11-76497143-2	chr11	76496643	76497643	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198018, intron 1 of 21)	intron (NM_198018, intron 1 of 21)	-2648.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	29.5	77.5	58.5	21.0	57.0	37.5
Merged-chr17-5208625-2	chr17	5208125	5209125	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	210142.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-86473826-2	chr10	86473326	86474326	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013722, intron 1 of 13)	L1_Mm|LINE|L1	25070.0	NM_001164495	27204.0	Mm.394931	NM_013722	ENSMUSG00000059602	Syn3	-	synapsin III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60346033-2	chr10	60345533	60346533	+	655.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159572)	promoter-TSS (NM_001159572)	-818.0	NM_001159572	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26154127-2	chr2	26153627	26154627	+	655.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13621.0	NM_001256521	109299.0	Mm.389259	NM_001256521		Tmem250-ps	AI551216|C330006A16Rik	transmembrane protein 250, pseudogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20714110-2	chr14	20713610	20714610	+	655.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001252081, exon 10 of 26)	exon (NM_001252081, exon 10 of 26)	6558.0	NM_001252082	268721.0	Mm.275082	NM_027996	ENSMUSG00000021819	Zswim8	2310021P13Rik|4832404P21Rik|Kiaa0913|mKIAA0913	zinc finger SWIM-type containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56445903-2	chr18	56445403	56446403	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	13771.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65906614-3	chr17	65906120	65907120	+	655.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20865.0	NM_009067	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3514158-2	chr8	3513658	3514658	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053177, intron 12 of 13)	intron (NM_053177, intron 12 of 13)	-1226.0	NM_001359122	50767.0	Mm.23085	NM_015801	ENSMUSG00000004565	Pnpla6	AI661849|MSws|Nte	patatin-like phospholipase domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115526668-2	chr8	115526168	115527168	+	655.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	180226.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43926804-2	chr19	43926304	43927304	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028029, intron 1 of 15)	intron (NM_028029, intron 1 of 15)	13394.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	1.5	2.5	3.0	3.0	3.0	1.5
Merged-chr10-86729127-2	chr10	86728627	86729627	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003910, intron 4 of 15)	B2_Mm2|SINE|B2	16362.0	NM_153595	103220.0	Mm.440762	NM_153595	ENSMUSG00000044937	Ttc41	AI449705|AU041509|Gnn	tetratricopeptide repeat domain 41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122246613-2	chr3	122246113	122247113	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008129, intron 1 of 6)	ID_B1|SINE|B4	1056.0	NM_008129	14630.0	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118734879-2	chr9	118734379	118735379	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	23187.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.0	4.5	4.0	0.0	0.0	17.0
Merged-chr11-79029997-2	chr11	79029497	79030497	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348207, intron 8 of 17)	intron (NM_001348207, intron 8 of 17)	6400.0	NR_045873	790910.0	Mm.440410	NR_045873		Gm11201	-	predicted gene 11201	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91100777-2	chr2	91100278	91101278	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011355, intron 2 of 4)	intron (NM_011355, intron 2 of 4)	4100.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	0.0	15.5	22.5	5.0	7.0	7.5
Merged-chr11-29149549-2	chr11	29149049	29150049	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027869, intron 18 of 27)	PB1D10|SINE|Alu	18798.0	NM_027869	71701.0	Mm.211131	NM_027869	ENSMUSG00000020464	Pnpt1	1200003F12Rik|Old35|PNPase|Pnptl1	polyribonucleotide nucleotidyltransferase 1	protein-coding	22.0	28.0	5.0	6.0	10.0	10.0
Merged-chr9-90432515-2	chr9	90432015	90433015	+	655.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-161746.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122706154-2	chr5	122705503	122706503	+	655.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1541.0	NM_001310720	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	0.5	11.5	5.5	4.0	18.5	10.5
Merged-chr14-111448576-2	chr14	111448076	111449076	+	655.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-226539.0	NM_198865	75409.0	Mm.235097	NM_029273	ENSMUSG00000033214	Slitrk5	2610019D03Rik	SLIT and NTRK-like family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-49022346-4	chr14	49021880	49022880	+	655.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207214, intron 13 of 17)	L2a|LINE|L2	-44169.0	NM_001360070	74385.0	Mm.379235	NM_144535	ENSMUSG00000036291	Ap5m1	4932432K03Rik|Mu5|Mudeng	adaptor-related protein complex 5, mu 1 subunit	protein-coding	0.5	0.5	3.0	6.5	7.5	5.0
Merged-chr2-167065961-2	chr2	167065461	167066461	+	655.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_138563)	TTS (NR_138563)	668.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62431299-2	chr10	62430799	62431799	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359806, intron 13 of 14)	intron (NM_001359806, intron 13 of 14)	-8842.0	NM_145419	216019.0	Mm.213213	NM_145419	ENSMUSG00000020080	Hkdc1	BC016235	hexokinase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-55892708-2	chr17	55892208	55893208	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145490, intron 1 of 3)	intron (NM_145490, intron 1 of 3)	615.0	NM_145490	224893.0	Mm.294853	NM_145490	ENSMUSG00000003198	Zfp959	-	zinc finger protein 959	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70263459-2	chr9	70262959	70263959	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	56109.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-65119548-3	chr1	65119032	65120032	+	655.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175293, intron 3 of 7)	intron (NM_175293, intron 3 of 7)	3682.0	NM_175293	98303.0	Mm.348057	NM_175293	ENSMUSG00000044816	D630023F18Rik	AI314969	RIKEN cDNA D630023F18 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57037925-3	chr15	57037404	57038404	+	655.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	227257.0	NM_001357930	210463.0	Mm.26555	NM_172378	ENSMUSG00000022366	Slc22a22	oat-pg	solute carrier family 22 (organic cation transporter), member 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83442448-2	chr17	83441948	83442948	+	655.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357886, intron 7 of 21)	intron (NM_001357886, intron 7 of 21)	71885.0	NM_009187	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109692415-2	chr8	109691915	109692915	+	655.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_155034, intron 1 of 10)	intron (NR_155034, intron 1 of 10)	879.0	NR_155034	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81322179-2	chr7	81321679	81322679	+	655.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 17 of 21)	intron (NM_008803, intron 17 of 21)	23055.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78564262-2	chr15	78563762	78564762	+	655.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009008, intron 5 of 6)	intron (NM_009008, intron 5 of 6)	8521.0	NM_009008	19354.0	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	Rac family small GTPase 2	protein-coding	0.0	2.0	1.0	1.5	0.0	0.5
Merged-chr3-65974040-2	chr3	65973540	65974540	+	655.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-15791.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	3.0	13.5	10.5	3.0	13.5	11.5
Merged-chr9-46933420-3	chr9	46932917	46933917	+	655.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19814.0	NR_015605	73040.0	Mm.265384	NR_015605	ENSMUSG00000099696	2900052N01Rik	AU067665	RIKEN cDNA 2900052N01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105039102-3	chr3	105038589	105039589	+	655.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 1 of 5)	intron (NM_030249, intron 1 of 5)	13864.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-122120278-3	chr9	122119791	122120791	+	655.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357776, intron 1 of 5)	intron (NM_001357776, intron 1 of 5)	2832.0	NM_001357776	20623.0	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-37716395-3	chr2	37715909	37716909	+	655.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28125.0	NR_039590	100628597.0		NR_039590	ENSMUSG00000092958	Mir5128	mir-5128|mmu-mir-5128|mu-mir-5128	microRNA 5128	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62353658-3	chr4	62353159	62354159	+	655.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355385, intron 1 of 27)	intron (NM_001355385, intron 1 of 27)	6937.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-25547445-3	chr19	25546944	25547944	+	655.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015826, intron 3 of 4)	intron (NM_015826, intron 3 of 4)	41738.0	NM_015826	50796.0	Mm.391208	NM_015826	ENSMUSG00000024837	Dmrt1	-	doublesex and mab-3 related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-48930492-4	chr2	48929990	48930990	+	655.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149356, intron 6 of 13)	intron (NR_149356, intron 6 of 13)	18777.0	NM_001177313	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12423345-3	chr13	12422858	12423858	+	655.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144835, intron 28 of 44)	RMER1B|Other|Other	27983.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-72520074-3	chr11	72519578	72520578	+	655.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029932, intron 8 of 11)	intron (NM_029932, intron 8 of 11)	-30158.0	NM_153060	216892.0	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-10540366-4	chr13	10539860	10540860	+	655.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR42-int|LTR|ERVK	-179557.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104232688-2	chr9	104232188	104233188	+	655.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 6 of 56)	intron (NM_001359740, intron 6 of 56)	30242.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-106228800-2	chr4	106228300	106229300	+	655.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12413.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	0.0	4.5	0.0	0.5	0.0	0.0
Merged-chr16-91511591-2	chr16	91511077	91512077	+	655.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	15967.0	NR_105786	102465190.0		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	0.0	2.0	12.5	1.5	11.5	14.0
Merged-chr17-23874116-3	chr17	23873618	23874618	+	655.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6046.0	NM_020487	57256.0	Mm.386785	NM_020487	ENSMUSG00000024116	Prss21	1700023E12Rik|TESP5|mT4|testisin	protease, serine 21	protein-coding	0.0	0.5	1.0	3.0	5.5	2.5
Merged-chr3-88158136-2	chr3	88157636	88158636	+	655.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133665, exon 4 of 11)	exon (NM_133665, exon 4 of 11)	15764.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-76711497-2	chr2	76710997	76711997	+	655.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011652, exon 307 of 313)	exon (NM_011652, exon 307 of 313)	36182.0	NM_031256	83435.0	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23994696-2	chr17	23994191	23995191	+	655.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133731, exon 5 of 6)	exon (NM_133731, exon 5 of 6)	3409.0	NM_133731	70835.0	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	0.0	2.0	2.0	1.5	0.0	1.5
Merged-chr15-25631552-2	chr15	25631052	25632052	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 1 of 40)	intron (NM_019472, intron 1 of 40)	9002.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-56031115-3	chr16	56030603	56031603	+	655.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1386.0	NM_001356450	76302.0	Mm.310642	NM_001024622	ENSMUSG00000071533	Pcnp	1110018D06Rik|AI647035	PEST proteolytic signal containing nuclear protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51238715-2	chr3	51238215	51239215	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009834, intron 1 of 2)	ORR1D1|LTR|ERVL-MaLR	14268.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43578738-1	chr17	43578238	43579238	+	655.0	f0_balb.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	10287.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	12.0	29.0	20.0	18.0	30.0	20.5
Merged-chr11-118367906-2	chr11	118367406	118368406	+	655.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-12495.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87706496-2	chr6	87705996	87706996	+	655.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15649.0	NR_045482	613264.0	Mm.480195	NR_045482	ENSMUSG00000089997	1810020O05Rik	-	Riken cDNA 1810020O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167648421-2	chr2	167647921	167648921	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145538, intron 2 of 5)	intron (NM_145538, intron 2 of 5)	13123.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163614016-2	chr2	163613516	163614516	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_131225, intron 3 of 3)	intron (NR_131225, intron 3 of 3)	6804.0	NM_001305803	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-115900925-2	chr4	115900425	115901425	+	655.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10259.0	NM_001357060	76237.0	Mm.101606	NM_001357060	ENSMUSG00000034185	6430628N08Rik	-	RIKEN cDNA 6430628N08 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88655545-2	chr3	88655045	88656045	+	655.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2403.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	1.5	2.5	0.0	1.5	2.0	0.0
Merged-chr2-38207971-1	chr2	38207471	38208471	+	655.0	f0_balb.idr	intron (NM_146122, intron 2 of 21)	B1F|SINE|Alu	79413.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28699679-2	chr17	28699179	28700179	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	7111.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27537996-2	chr7	27537496	27538496	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317355, intron 9 of 13)	intron (NM_001317355, intron 9 of 13)	14735.0	NM_001033315	233020.0	Mm.429716	NM_001033315	ENSMUSG00000040424	Hipk4	Gm162	homeodomain interacting protein kinase 4	protein-coding	0.0	6.5	3.0	0.0	2.0	4.5
Merged-chr11-32536892-3	chr11	32536399	32537399	+	655.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	3633.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	1.0	10.0	9.5	5.5	10.0	7.5
Merged-chr2-167733433-2	chr2	167732933	167733933	+	655.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42256.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135250509-2	chr4	135250009	135251009	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	B1F1|SINE|Alu	22251.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51860556-2	chr11	51860056	51861056	+	655.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2926.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73052094-1	chr17	73051594	73052594	+	655.0	f1_c57bl6.idr	Intergenic	Intergenic	-55891.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0.0	10.0	1.5	0.0	3.5	0.0
Merged-chr17-34621782-2	chr17	34621282	34622282	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302395, intron 7 of 8)	intron (NM_001302395, intron 7 of 8)	5366.0	NM_019441	54397.0	Mm.373627	NM_019441	ENSMUSG00000015474	Ppt2	0610007M19Rik|AA672937	palmitoyl-protein thioesterase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-4216429-2	chr3	4215929	4216929	+	655.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2A|LINE|L1	-582279.0	NR_045272	100503859.0	Mm.75172	NR_045272	ENSMUSG00000098659	1110015O18Rik	-	RIKEN cDNA 1110015O18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-94271994-2	chr2	94271494	94272494	+	655.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10595.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24960712-1	chr10	24960212	24961212	+	655.0	f1_balb.idr	Intergenic	Intergenic	-33242.0	NM_007482	11846.0	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	0.0	5.5	0.5	6.0	1.0	0.0
Merged-chr6-67266303-1	chr6	67265803	67266803	+	655.0	f0_balb.idr	promoter-TSS (NM_025814)	promoter-TSS (NM_025814)	-676.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-74433938-2	chr5	74433438	74434438	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114660, intron 4 of 8)	intron (NM_001114660, intron 4 of 8)	97804.0	NM_178672	212986.0	Mm.134147	NM_178672	ENSMUSG00000062110	Scfd2	E430013M20Rik|STXBP1L1	Sec1 family domain containing 2	protein-coding	2.0	0.0	0.0	2.0	0.0	0.0
Merged-chr7-80613356-1	chr7	80612856	80613856	+	655.0	f1_balb.idr	intron (NM_173863, intron 6 of 14)	intron (NM_173863, intron 6 of 14)	-22661.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr5-54038818-2	chr5	54038304	54039304	+	655.0	f0_balb.idr|f0_c57.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	40281.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25617951-2	chr7	25617451	25618451	+	655.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1463.0	NM_001290487	66349.0	Mm.159956	NM_025504	ENSMUSG00000057229	Dmac2	2310004L02Rik|Atp5sl|C030044E10Rik	distal membrane arm assembly complex 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123016057-3	chr9	123015583	123016583	+	655.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010620, intron 32 of 34)	ORR1E|LTR|ERVL-MaLR	-5243.0	NM_025339	66079.0	Mm.482265	NM_025339	ENSMUSG00000066233	Tmem42	0610027O18Rik|4933429E06Rik|AV003444|D9Ertd662e	transmembrane protein 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-79246465-2	chr7	79245965	79246965	+	655.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26801.0	NM_018811	54608.0	Mm.365490	NM_018811	ENSMUSG00000039202	Abhd2	2210009N18Rik|LABH2|Labh-2	abhydrolase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-174487927-1	chr1	174487427	174488427	+	655.0	f0_balb.idr	Intergenic	RSINE1|SINE|B4	-13898.0	NM_019445	54418.0	Mm.330620	NM_019445	ENSMUSG00000028354	Fmn2	AU024104	formin 2	protein-coding	6.5	2.0	3.5	4.5	2.0	5.5
Merged-chr12-98884092-2	chr12	98883592	98884592	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081191, intron 2 of 43)	intron (NM_001081191, intron 2 of 43)	17392.0	NM_001081191	319670.0	Mm.390484	NM_001081191	ENSMUSG00000051166	Eml5	BC027154|C130068M19Rik	echinoderm microtubule associated protein like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-11773763-2	chr18	11773267	11774267	+	655.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65507.0	NM_001146287	63955.0	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	11.5	9.0	14.5	4.0	11.5	2.0
Merged-chr6-28450553-2	chr6	28450053	28451053	+	655.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1213.0	NM_001159925	18506.0	Mm.8026	NM_011038	ENSMUSG00000029706	Pax4	Pax-4	paired box 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89433047-2	chr3	89432547	89433547	+	655.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001293763, exon 3 of 3)	exon (NM_001293763, exon 3 of 3)	2210.0	NM_026869	68911.0	Mm.22521	NM_026869	ENSMUSG00000047824	Pygo2	1190004M21Rik	pygopus 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105771393-2	chr1	105770893	105771893	+	655.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2-int|LTR|ERVL-MaLR	-9330.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-71592332-2	chr9	71591832	71592832	+	655.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033208)	promoter-TSS (NM_001033208)	28.0	NM_001033208	102371.0	Mm.27585	NM_001033208	ENSMUSG00000041361	Myzap	AA407270|AV006038|Gcom1|Gm640|Grinl1a7|Myozap	myocardial zonula adherens protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90123279-1	chr9	90122779	90123779	+	655.0	f1_balb.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-8459.0	NM_024431	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	4.5	0.0	2.0	4.5	4.5	0.5
Merged-chr2-102659039-1	chr2	102658539	102659539	+	655.0	f0_balb.idr	5' UTR (NM_001361018, exon 1 of 10)	5' UTR (NM_001361018, exon 1 of 10)	350.0	NM_001361018	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29460127-2	chr19	29459627	29460627	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	Lx8|LINE|L1	49208.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33532290-2	chr16	33531790	33532790	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 1 of 11)	intron (NM_001083902, intron 1 of 11)	13695.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100421185-3	chr12	100420640	100421640	+	655.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 5 of 19)	intron (NM_001033213, intron 5 of 19)	99682.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45730072-2	chr17	45729572	45730572	+	655.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3772.0	NM_028164	72240.0	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84646389-2	chr3	84645889	84646889	+	655.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19803.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-39203586-2	chr2	39203086	39204086	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024209, intron 4 of 6)	intron (NM_024209, intron 4 of 6)	-12856.0	NM_178778	320271.0	Mm.204836	NM_178778	ENSMUSG00000035236	Scai	9330112M16|A930041I02Rik|AI662729	suppressor of cancer cell invasion	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134362931-2	chr1	134362431	134363431	+	655.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020588)	promoter-TSS (NM_020588)	-925.0	NR_151737	57439.0	Mm.393140	NM_020588	ENSMUSG00000042305	Tmem183a	1300007B12Rik|1700020N19Rik|Tmem183	transmembrane protein 183A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120181963-2	chr8	120181463	120182463	+	655.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4494.0	NM_001033980	436062.0	Mm.334852	NM_001033980	ENSMUSG00000042269	Fam92b	1700120B06Rik	family with sequence similarity 92, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83096116-3	chr15	83095613	83096613	+	655.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4092.0	NM_023475	68607.0	Mm.30056	NM_023475	ENSMUSG00000058586	Serhl	0610008B10Rik|1110019M09Rik|AU019786	serine hydrolase-like	protein-coding	5.0	0.0	2.0	5.5	0.0	2.5
Merged-chr2-27728938-2	chr2	27728438	27729438	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	18355.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83547353-2	chr17	83546853	83547853	+	655.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33020.0	NM_001159529	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104118481-2	chr8	104117981	104118981	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 2 of 11)	ORR1B2|LTR|ERVL-MaLR	-12608.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-102629602-2	chr9	102629102	102630102	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181394, intron 1 of 2)	intron (NM_181394, intron 1 of 2)	3306.0	NM_181394	69010.0	Mm.2000	NM_181394	ENSMUSG00000035048	Anapc13	1810004D07Rik|APC13|SWM1	anaphase promoting complex subunit 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-105631605-2	chr7	105631105	105632105	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018880, intron 1 of 11)	Lx9|LINE|L1	1966.0	NM_018880	55992.0	Mm.29290	NM_018880	ENSMUSG00000036989	Trim3	BERP1|HAC1|Rnf22	tripartite motif-containing 3	protein-coding	1.0	0.0	2.5	0.0	8.5	5.5
Merged-chr2-142142596-2	chr2	142142096	142143096	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 8 of 18)	intron (NM_001013802, intron 8 of 18)	758868.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3664659-1	chr4	3664159	3665159	+	655.0	f0_balb.idr	Intergenic	Intergenic	8153.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	2.0	2.0	1.5	4.5	3.0	4.0
Merged-chr13-45915174-1	chr13	45914674	45915674	+	655.0	f0_balb.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	49817.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-12943686-1	chr7	12943186	12944186	+	655.0	f0_balb.idr	Intergenic	B3A|SINE|B2	16270.0	NM_029809	381845.0	Mm.439896	NM_029809	ENSMUSG00000033967	Rnf225	2310014L17Rik|AV237412|C77118	ring finger protein 225	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-59627132-1	chr16	59626632	59627632	+	655.0	f0_balb.idr	intron (NM_019665, intron 2 of 7)	intron (NM_019665, intron 2 of 7)	-9813.0	NR_040564	75145.0	Mm.399348	NR_040564		4930547E14Rik	-	RIKEN cDNA 4930547E14 gene	ncRNA	0.0	2.0	5.0	6.0	3.0	1.0
Merged-chr13-60357207-1	chr13	60356707	60357707	+	655.0	f1_balb.idr	Intergenic	Intergenic	151736.0	NR_036449	100503759.0	Mm.38101	NM_177810	ENSMUSG00000050765	Gm5084	A030007L22|EG328264	predicted gene 5084	ncRNA	16.5	12.0	10.0	21.0	17.0	8.5
Merged-chr2-119016477-1	chr2	119015977	119016977	+	655.0	f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	12916.0	NM_199310	269336.0	Mm.292465	NM_199310	ENSMUSG00000039983	Ccdc32	Gm631	coiled-coil domain containing 32	protein-coding	43.0	92.0	45.0	10.0	33.5	24.0
Merged-chr11-101463805-2	chr11	101463305	101464305	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_012037, intron 1 of 5)	intron (NM_012037, intron 1 of 5)	2394.0	NM_012037	26949.0	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-44057475-1	chr5	44056975	44057975	+	655.0	f1_c57bl6.idr	intron (NM_001163578, intron 2 of 22)	intron (NM_001163578, intron 2 of 22)	37293.0	NM_001163581	19126.0	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	0.0	4.5	2.0	0.0	0.0	1.0
Merged-chr5-124027417-2	chr5	124026932	124027932	+	655.0	f0_c57.idr|f1_balb.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	4828.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	10.0	39.0	23.5	18.0	21.0	19.0
Merged-chr5-120501287-2	chr5	120500802	120501802	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023625, intron 1 of 11)	RSINE1|SINE|B4	2321.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	3.0	3.0	0.0	3.0	0.0	0.5
Merged-chr6-70879883-2	chr6	70879383	70880383	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010121, intron 4 of 16)	intron (NM_010121, intron 4 of 16)	35368.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142384876-2	chr7	142384376	142385376	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009983, intron 2 of 8)	intron (NM_009983, intron 2 of 8)	2994.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	5.5	20.5	10.0	7.0	6.5	6.5
Merged-chr4-109201333-2	chr4	109200833	109201833	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346502, intron 1 of 23)	intron (NM_001346502, intron 1 of 23)	939.0	NM_133885	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	32.0	39.5	37.5	17.5	66.0	50.0
Merged-chr1-170286179-1	chr1	170285679	170286679	+	655.0	f0_balb.idr	non-coding (NR_153837, exon 3 of 3)	non-coding (NR_153837, exon 3 of 3)	8861.0	NR_153837	26904.0	Mm.57009	NM_012009	ENSMUSG00000102418	Sh2d1b1	EAT-2|EAT-2A|Eat2|Eat2a|Sh2d1b	SH2 domain containing 1B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90263006-2	chr3	90262506	90263506	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151631, intron 12 of 13)	intron (NR_151631, intron 12 of 13)	-2229.0	NM_001356483	229541.0	Mm.30571	NM_201407	ENSMUSG00000042404	Dennd4b	-	DENN/MADD domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27038245-2	chr2	27037745	27038745	+	655.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10247.0	NM_001177627	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-10009990-2	chr3	10009490	10010490	+	655.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2595.0	NM_001272097	16592.0	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21207047-2	chr9	21206547	21207547	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183408, intron 14 of 14)	intron (NM_183408, intron 14 of 14)	10342.0	NM_019798	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34934125-2	chr18	34933625	34934625	+	655.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-2122.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72264420-2	chr5	72263920	72264920	+	655.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153389, exon 12 of 23)	exon (NM_153389, exon 12 of 23)	61077.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.0	0.5	3.0	8.0	11.0	7.0
Merged-chr2-27624551-2	chr2	27624051	27625051	+	655.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52650.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19377396-1	chr7	19376896	19377896	+	655.0	f1_c57bl6.idr	intron (NM_001010836, intron 11 of 12)	intron (NM_001010836, intron 11 of 12)	-4643.0	NM_007949	13871.0	Mm.36524	NM_007949	ENSMUSG00000030400	Ercc2	AA407812|AU020867|AW240756|CXPD|Ercc-2|Mhdarco15|RCO015|XPD	excision repair cross-complementing rodent repair deficiency, complementation group 2	protein-coding	0.0	0.0	0.0	0.0	0.0	3.0
Merged-chr7-141271457-2	chr7	141270957	141271957	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028069, intron 12 of 13)	intron (NM_028069, intron 12 of 13)	-5033.0	NM_001252600	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55535880-2	chr13	55535380	55536380	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134059, intron 3 of 16)	intron (NM_134059, intron 3 of 16)	778.0	NM_134059	72935.0	Mm.205045	NM_134059	ENSMUSG00000021494	Ddx41	2900024F02Rik|AA958953|ABS|AI324246	DEAD (Asp-Glu-Ala-Asp) box polypeptide 41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52220264-2	chr2	52219764	52220764	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010889, intron 85 of 156)	intron (NM_010889, intron 85 of 156)	-70738.0	NR_040620	78049.0	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49212002-2	chr13	49211502	49212502	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026738, intron 1 of 5)	intron (NM_026738, intron 1 of 5)	4024.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58540066-2	chr9	58539566	58540566	+	654.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133983, intron 1 of 6)	intron (NM_133983, intron 1 of 6)	874.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102002600-3	chr2	102002110	102003110	+	654.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178886, intron 4 of 5)	intron (NM_178886, intron 4 of 5)	116348.0	NM_029635	76501.0	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	13.5	3.5	23.0	0.0	3.0	1.5
Merged-chr1-85111789-3	chr1	85111291	85112291	+	654.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1938.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165666466-2	chr1	165665966	165666966	+	654.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	-31925.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-35730886-2	chr5	35730386	35731386	+	654.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359895, intron 1 of 17)	intron (NM_001359895, intron 1 of 17)	-1610.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111095974-3	chr9	111095501	111096501	+	654.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22110.0	NM_027742	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78138069-2	chr10	78137569	78138569	+	654.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31699.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132589746-3	chr7	132589243	132590243	+	654.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9894.0	NM_009123	20231.0	Mm.334281	NM_009123	ENSMUSG00000048528	Nkx1-2	Nkx-1.1|Nkx-1.2|Sax1	NK1 homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-119525445-2	chr1	119524945	119525945	+	654.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146103)	promoter-TSS (NM_146103)	-709.0	NM_146103	226351.0	Mm.439806	NM_146103	ENSMUSG00000098923	Tmem185b	2500001K11Rik	transmembrane protein 185B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41379196-2	chr19	41378696	41379696	+	654.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 1 of 16)	intron (NM_031376, intron 1 of 16)	5874.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	11.5	12.5	15.0	11.0	39.0	10.5
Merged-chr7-126810617-2	chr7	126810117	126811117	+	654.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-6268.0	NM_026884	68952.0	Mm.440393	NM_026884	ENSMUSG00000058966	Fam57b	1500016O10Rik|A330104J06Rik|AI413816|AW060769	family with sequence similarity 57, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123173113-2	chr5	123172613	123173613	+	654.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008277, intron 12 of 13)	B4A|SINE|B4	9610.0	NM_008277	15445.0	Mm.439709	NM_008277	ENSMUSG00000029445	Hpd	4HPPD|Fla|Flp|Hppd|Laf	4-hydroxyphenylpyruvic acid dioxygenase	protein-coding	3.0	0.0	0.0	3.0	0.0	0.0
Merged-chr10-44270997-2	chr10	44270497	44271497	+	654.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358596, intron 1 of 6)	intron (NM_001358596, intron 1 of 6)	2658.0	NM_001358596	11793.0	Mm.22264	NM_053069	ENSMUSG00000038160	Atg5	2010107M05Rik|3110067M24Rik|AW319544|Apg5l|Atg5l|C88337|Paddy	autophagy related 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64809190-2	chr9	64808690	64809690	+	654.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1821.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-72694145-2	chr11	72693662	72694662	+	654.75	f0_balb.idr|f0_c57.idr	intron (NM_009671, intron 1 of 24)	ORR1C2|LTR|ERVL-MaLR	4160.0	NM_009671	11736.0	Mm.10313	NM_009671	ENSMUSG00000020790	Ankfy1	Ankhzn|ZFYVE14|mKIAA1255	ankyrin repeat and FYVE domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34913856-1	chr2	34913356	34914356	+	654.75	f0_balb.idr	intron (NM_028716, intron 1 of 14)	CpG	120.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131518518-2	chr2	131518018	131519018	+	654.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177840, intron 3 of 3)	intron (NM_001177840, intron 3 of 3)	26656.0	NM_001177838	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-40528100-2	chr3	40527600	40528600	+	654.6999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E2|LTR|ERVL-MaLR	-5188.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-8973587-3	chr8	8973094	8974094	+	654.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	158694.0	NR_045854	71249.0	Mm.158635	NR_045854	ENSMUSG00000108848	4933430N04Rik	-	RIKEN cDNA 4933430N04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-98233017-3	chr6	98232514	98233514	+	654.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109740.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-81127267-3	chr3	81126772	81127772	+	654.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	90856.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	5.5	36.0	37.0	10.5	29.5	37.5
Merged-chr1-40330664-3	chr1	40330166	40331166	+	654.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356478, intron 4 of 10)	intron (NM_001356478, intron 4 of 10)	6077.0	NM_133193	107527.0	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120327692-3	chr7	120327168	120328168	+	654.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41B|LTR|ERVL	-1016.0	NM_177213	320631.0	Mm.78330	NM_177213	ENSMUSG00000054746	Abca15	4930500I12Rik	ATP-binding cassette, sub-family A (ABC1), member 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120048295-1	chr11	120047795	120048795	+	654.666687	f1_balb.idr	Intergenic	Intergenic	-1150.0	NM_007377	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	0.5	2.0	1.0	4.0	0.0	3.5
Merged-chr17-35243760-2	chr17	35243251	35244251	+	654.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105941)	promoter-TSS (NR_105941)	-324.0	NR_105941	102465589.0		NR_105941	ENSMUSG00000098499	Mir6975	Gm27693|mmu-mir-6975	microRNA 6975	ncRNA	32.0	67.0	79.5	24.0	78.0	103.5
Merged-chr8-70862117-2	chr8	70861617	70862617	+	654.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5109.0	NM_032397	84036.0	Mm.32074	NM_032397	ENSMUSG00000002908	Kcnn1	AI854248|KCa2.1|SK1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	protein-coding	0.5	3.5	0.0	0.0	0.0	0.0
Merged-chr15-76468536-2	chr15	76468036	76469036	+	654.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013481, intron 2 of 15)	intron (NM_013481, intron 2 of 15)	8733.0	NM_013481	12181.0	Mm.4283	NM_013481	ENSMUSG00000022557	Bop1	AU020183|AW146150|D18861|Erb1p|Kiaa0124|mKIAA0124	block of proliferation 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22048304-3	chr8	22047802	22048802	+	654.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007511, intron 1 of 20)	intron (NM_007511, intron 1 of 20)	11772.0	NM_007511	11979.0	Mm.87854	NM_007511	ENSMUSG00000006567	Atp7b	Atp7a|WND|tx	ATPase, Cu++ transporting, beta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79974240-3	chr11	79973730	79974730	+	654.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-11843.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	0.0	0.0	0.0	1.0	11.0	0.0
Merged-chr6-5291014-3	chr6	5290522	5291522	+	654.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183308, intron 1 of 8)	intron (NM_183308, intron 1 of 8)	7351.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	0.0	2.0	2.0	1.0	0.0	0.0
Merged-chr2-71813009-3	chr2	71812512	71813512	+	654.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008397, intron 1 of 25)	intron (NM_008397, intron 1 of 25)	26073.0	NM_001277970	16403.0	Mm.225096	NM_008397	ENSMUSG00000027111	Itga6	5033401O05Rik|AI115430|Cd49f|VLA-6	integrin alpha 6	protein-coding	0.0	4.0	1.5	0.0	0.5	1.0
Merged-chr2-159950386-4	chr2	159949882	159950882	+	654.554138	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040498, intron 1 of 6)	intron (NR_040498, intron 1 of 6)	3041.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	4.0	0.0	4.5	0.0	1.0	1.5
Merged-chr2-62641979-3	chr2	62641474	62642474	+	654.516663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164477, intron 1 of 14)	intron (NM_001164477, intron 1 of 14)	4281.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119922084-2	chr11	119921584	119922584	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 2)	intron (NR_039557, intron 2 of 2)	8274.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119386919-2	chr8	119386419	119387419	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-7973.0	NM_019966	56690.0	Mm.423037	NM_019966	ENSMUSG00000074064	Mlycd	AI324784|Mcd	malonyl-CoA decarboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-50762036-2	chr10	50761536	50762536	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 34 of 41)	B1_Mur3|SINE|Alu	-133615.0	NM_011376	20464.0	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded family bHLH transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164865110-2	chr2	164864610	164865610	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR31F_MM|LTR|ERVK	-7402.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-148473795-2	chr6	148473295	148474295	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29443.0	NM_001347518	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52017226-2	chr13	52016726	52017726	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79515.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-51474989-2	chr1	51474484	51475484	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028696, intron 2 of 5)	L1_Mus1|LINE|L1	3415.0	NM_001310548	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86386634-2	chr1	86386134	86387134	+	654.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001319227, exon 3 of 3)	exon (NM_001319227, exon 3 of 3)	1507.0	NM_010341	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-97336385-2	chr1	97335885	97336885	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-208082.0	NM_028942	74441.0	Mm.60362	NM_028942	ENSMUSG00000026331	Slco6c1	4933404A18Rik|C79179	solute carrier organic anion transporter family, member 6c1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21685599-2	chr9	21685099	21686099	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357764, intron 29 of 34)	RSINE1|SINE|B4	-37977.0	NM_001252658	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118691344-3	chr9	118690855	118691855	+	654.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 14 of 27)	intron (NM_133721, intron 14 of 27)	-20337.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	1.5	0.0	0.5	0.5	0.0	0.0
Merged-chr8-108955944-2	chr8	108955475	108956475	+	654.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_007496, exon 10 of 10)	exon (NM_007496, exon 10 of 10)	19115.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0.0	4.0	0.0	0.0	2.0	0.0
Merged-chr2-27694347-2	chr2	27693847	27694847	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-14945.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8857162-2	chr17	8856672	8857672	+	654.5	f0_balb.idr|f0_c57.idr	intron (NM_001347321, intron 1 of 21)	intron (NM_001347321, intron 1 of 21)	7187.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.0	1.5	5.0	0.5	0.5	0.0
Merged-chr11-52001485-2	chr11	52000985	52001985	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1019.0	NM_009458	22210.0	Mm.384918	NM_009458	ENSMUSG00000020390	Ube2b	E2-14k|HR6B|Rad6b|mHR6B	ubiquitin-conjugating enzyme E2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75068068-2	chr8	75067568	75068568	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136259, intron 14 of 15)	intron (NM_001136259, intron 14 of 15)	-25550.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44760757-2	chr13	44760257	44761257	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205043, intron 1 of 17)	intron (NM_001205043, intron 1 of 17)	29486.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91949009-2	chr2	91948509	91949509	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166597, intron 1 of 31)	intron (NM_001166597, intron 1 of 31)	1339.0	NM_001166597	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	6.5	6.0	6.0	4.5	14.5	8.5
Merged-chr8-34210151-2	chr8	34209651	34210651	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43439.0	NR_105820	102465211.0		NR_105820	ENSMUSG00000098785	Mir6395	Gm27561|mmu-mir-6395	microRNA 6395	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-111001897-2	chr4	111001397	111002397	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001284190, intron 4 of 12)	intron (NM_001284190, intron 4 of 12)	-413109.0	NR_033793	67621.0	Mm.45533	NM_026279	ENSMUSG00000028545	Bend5	2310026E23Rik	BEN domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-137694156-2	chr6	137693649	137694649	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-40933.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-16314488-2	chr8	16313988	16314988	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053171, intron 10 of 69)	intron (NM_053171, intron 10 of 69)	-145650.0	NR_037214	100526464.0		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91655261-2	chr2	91654761	91655761	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359970, intron 4 of 13)	intron (NM_001359970, intron 4 of 13)	2053.0	NM_146124	228359.0	Mm.22413	NM_146124	ENSMUSG00000027247	Arhgap1	B230365D05Rik|C76222|Cdc42GAP|p50rhoGAP	Rho GTPase activating protein 1	protein-coding	0.0	2.5	0.0	0.0	0.0	0.5
Merged-chr7-35737030-1	chr7	35736530	35737530	+	654.5	f0_balb.idr	intron (NM_178704, intron 3 of 18)	intron (NM_178704, intron 3 of 18)	17424.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	8.5	1.5	0.0	17.5	44.5	11.5
Merged-chr7-114525820-2	chr7	114525320	114526320	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011055, intron 11 of 15)	intron (NM_011055, intron 11 of 15)	37152.0	NR_110407	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	11.0	16.5	16.0	4.0	9.0	4.5
Merged-chr4-53271229-2	chr4	53270729	53271729	+	654.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033139)	promoter-TSS (NR_033139)	-997.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-91787078-2	chr9	91786578	91787578	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-405858.0	NM_001195693	100504689.0	Mm.464262	NM_001195693	ENSMUSG00000095654	Plscr5	331000	phospholipid scramblase family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70684350-2	chr11	70683850	70684850	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190379, intron 3 of 20)	ID4_|SINE|ID	3755.0	NM_001190376	216874.0	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-57915424-2	chr4	57914924	57915924	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178727, intron 1 of 1)	intron (NM_178727, intron 1 of 1)	840.0	NM_178727	242484.0	Mm.23214	NM_178727	ENSMUSG00000052117	D630039A03Rik	-	RIKEN cDNA D630039A03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-112042871-1	chr7	112042371	112043371	+	654.5	f0_balb.idr	intron (NM_133758, intron 1 of 27)	L1MDa|LINE|L1	19365.0	NM_177249	74996.0	Mm.16974	NM_133758	ENSMUSG00000059263	Usp47	4930502N04Rik|A630020C16Rik	ubiquitin specific peptidase 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44886040-2	chr7	44885540	44886540	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331206, intron 4 of 16)	intron (NM_001331206, intron 4 of 16)	6384.0	NM_001331208	75613.0	Mm.157778	NM_029365	ENSMUSG00000002968	Med25	2610034E13Rik|2610529E18Rik|ESTM2	mediator complex subunit 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-27161374-2	chr18	27160874	27161874	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-1398790.0	NR_045398	320624.0	Mm.50107	NR_045398		4930474G06Rik	-	RIKEN cDNA 4930474G06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17590446-2	chr6	17589971	17590971	+	654.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46539.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	21.0	26.5	17.0	4.5	1.5	5.5
Merged-chr1-92646416-2	chr1	92645916	92646916	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153114, intron 1 of 4)	intron (NM_153114, intron 1 of 4)	2425.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78249233-2	chr11	78248733	78249733	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359106, intron 1 of 3)	B4|SINE|B4	3482.0	NM_001359106	20316.0	Mm.20755	NM_009143	ENSMUSG00000002064	Sdf2	AI853825	stromal cell derived factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73345767-2	chr13	73345267	73346267	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045293, intron 2 of 2)	B3|SINE|B2	1617.0	NR_045293	432777.0	Mm.415319	NR_045293	ENSMUSG00000113346	Eprn	AU019512|D630045M09Rik	ephemeron, early developmental lncRNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5683327-2	chr19	5682827	5683827	+	654.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_144868, exon 10 of 35)	exon (NM_144868, exon 10 of 35)	-4251.0	NR_105953	102465596.0		NR_105953	ENSMUSG00000098568	Mir6987	Gm27891|mmu-mir-6987	microRNA 6987	ncRNA	2.0	0.0	0.0	2.5	0.0	0.0
Merged-chr10-80669755-2	chr10	80669255	80670255	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021462, intron 6 of 13)	intron (NM_021462, intron 6 of 13)	6538.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62496984-2	chr4	62496484	62497484	+	654.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_138653, exon 7 of 7)	exon (NM_138653, exon 7 of 7)	5216.0	NM_024257	72748.0	Mm.41506	NM_024257	ENSMUSG00000038422	Hdhd3	2810435D12Rik	haloacid dehalogenase-like hydrolase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-101078405-2	chr9	101077905	101078905	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001100451, intron 1 of 1)	intron (NM_001100451, intron 1 of 1)	3643.0	NM_001100451	77853.0	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	MSL complex subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7897016-2	chr9	7896516	7897516	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-23846.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29249898-2	chr6	29249398	29250398	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22590.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr12-84221151-2	chr12	84220651	84221651	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-2270.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126220503-2	chr4	126220003	126221003	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-17793.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	12.5	4.5	16.5	12.5	6.5	14.5
Merged-chr1-87607253-2	chr1	87606753	87607753	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	12703.0	NM_015750	23956.0	Mm.143717	NM_015750	ENSMUSG00000079434	Neu2	MBS|MSS|MTS	neuraminidase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24918655-1	chr5	24918155	24919155	+	654.5	f0_balb.idr	intron (NM_145401, intron 4 of 15)	CT-rich|Low_complexity|Low_complexity	-10146.0	NM_001170555	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106672051-2	chr11	106671551	106672551	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 12 of 14)	intron (NM_001305158, intron 12 of 14)	43230.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31599324-2	chr5	31598824	31599824	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-14627.0	NM_025796	66845.0	Mm.120763	NM_025796	ENSMUSG00000106918	Mrpl33	0610009M10Rik|L33mt|MRP-L33	mitochondrial ribosomal protein L33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-90717038-2	chr6	90716538	90717538	+	654.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134383)	promoter-TSS (NM_001134383)	-509.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-4748726-2	chr6	4748226	4749226	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040611, intron 1 of 1)	intron (NM_001040611, intron 1 of 1)	1420.0	NM_130877	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	5.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120101461-2	chr9	120100961	120101961	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-8938.0	NM_144793	208638.0	Mm.236656	NM_144793	ENSMUSG00000032519	Slc25a38	AV019094|BC010801|appoptosin	solute carrier family 25, member 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-9500902-2	chr9	9500402	9501402	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	-261889.0	NM_027823	71544.0	Mm.334955	NM_027823	ENSMUSG00000050730	Arhgap42	9030420J04Rik|BE136619	Rho GTPase activating protein 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-19830735-1	chr13	19830235	19831235	+	654.5	f0_balb.idr	Intergenic	Intergenic	-6478.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr19-6939768-2	chr19	6939268	6940268	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177361, intron 2 of 6)	intron (NM_001177361, intron 2 of 6)	1425.0	NM_207220	107173.0	Mm.276555	NM_207220	ENSMUSG00000024958	Gpr137	AI428855	G protein-coupled receptor 137	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113438802-2	chr6	113438302	113439302	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3042.0	NM_178373	14311.0	Mm.10026	NM_178373	ENSMUSG00000030278	Cidec	CIDE-3|Fsp27	cell death-inducing DFFA-like effector c	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73506442-3	chr15	73505933	73506933	+	654.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6127.0	NR_152151	105841.0	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113872187-2	chr13	113871687	113872687	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	77679.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71673219-2	chr8	71672729	71673729	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1472.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	0.0	2.0	0.5	0.0	0.0	1.5
Merged-chr3-155646197-2	chr3	155645697	155646697	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-330157.0	NR_040553	329780.0	Mm.119000	NR_040553	ENSMUSG00000104553	9330178D15Rik	9330178D15	RIKEN cDNA 9330178D15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105720307-2	chr3	105719807	105720807	+	654.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175398, exon 2 of 2)	3' UTR (NM_175398, exon 2 of 2)	14849.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	0.0	4.0	0.0	2.0	5.0	2.0
Merged-chr11-59546322-2	chr11	59545822	59546822	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 2 of 9)	intron (NR_153314, intron 2 of 9)	3636.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128410660-2	chr8	128410160	128411160	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358959, intron 2 of 16)	intron (NM_001358959, intron 2 of 16)	51419.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	0.0	0.0	2.5	0.0	7.0	1.0
Merged-chr13-117711125-2	chr13	117710625	117711625	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045508, intron 3 of 4)	intron (NR_045508, intron 3 of 4)	8886.0	NR_045508	71100.0	Mm.414841	NR_045508	ENSMUSG00000079048	4933413L06Rik	-	RIKEN cDNA 4933413L06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65681900-2	chr18	65681420	65682420	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361052, intron 6 of 8)	intron (NM_001361052, intron 6 of 8)	-16348.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	15.5	17.5	14.0	43.5	79.0	35.0
Merged-chr16-94625111-3	chr16	94624598	94625598	+	654.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	MLT1G1|LTR|ERVL-MaLR	13679.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61529697-2	chr8	61529197	61530197	+	654.416687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 16 of 21)	intron (NM_001293772, intron 16 of 21)	41963.0	NM_145595	234309.0	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-26622879-3	chr19	26622353	26623353	+	654.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011416, intron 2 of 32)	intron (NM_011416, intron 2 of 32)	17693.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	1.0	1.0	1.0	0.0	0.0	2.5
Merged-chr12-72407134-3	chr12	72406597	72407597	+	654.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153457, intron 1 of 8)	intron (NM_153457, intron 1 of 8)	1957.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	3.5	0.0	0.0	2.0	0.0	0.0
Merged-chr7-110237758-1	chr7	110237258	110238258	+	654.333313	f0_balb.idr	intron (NM_009302, intron 1 of 11)	intron (NM_009302, intron 1 of 11)	16055.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41870268-3	chr10	41869798	41870798	+	654.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162908, intron 1 of 9)	intron (NM_001162908, intron 1 of 9)	-17141.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83633422-2	chr17	83632922	83633922	+	654.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1527.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-22390561-3	chr10	22390069	22391069	+	654.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-12244.0	NR_028580	100038752.0	Mm.392859	NR_028580	ENSMUSG00000096937	Gm10825	-	predicted gene 10825	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35728287-2	chr2	35727787	35728787	+	654.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001114124, exon 16 of 16)	3' UTR (NM_001114124, exon 16 of 16)	31555.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-87863402-4	chr4	87862894	87863894	+	654.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027326, intron 4 of 10)	intron (NM_027326, intron 4 of 10)	-57071.0	NM_029931	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116087422-2	chr9	116086901	116087901	+	654.25	f0_balb.idr|f1_c57bl6.idr	TTS (NM_009371)	TTS (NM_009371)	87962.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.0	0.5	5.5	0.0	16.5	6.5
Merged-chr17-87406422-2	chr17	87405922	87406922	+	654.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_029298, intron 5 of 6)	MTC|LTR|ERVL-MaLR	21319.0	NM_029298	75467.0	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101660161-2	chr11	101659661	101660661	+	654.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5380.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-60266603-2	chr14	60266103	60267103	+	654.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_144843, intron 1 of 13)	intron (NM_144843, intron 1 of 13)	1398.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	1.0	3.0	1.0	0.0	3.0	1.5
Merged-chr17-33892069-2	chr17	33891599	33892599	+	654.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1466.0	NM_001195298	100502766.0	Mm.335713	NM_001195298	ENSMUSG00000079553	Kifc1	100042970|Gm4137|HSET|KNSL2|Kifc5a|Knsl2a|Tctex-7|Tctex-7A|Tctex7|Tctex7a	kinesin family member C1	protein-coding	0.0	1.0	0.0	11.5	6.0	2.0
Merged-chr11-106823430-2	chr11	106822930	106823930	+	654.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_025481, intron 17 of 18)	B1_Mus1|SINE|Alu	34178.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149956409-2	chr4	149955909	149956909	+	654.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1403.0	NM_029035	74646.0	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	5.0	0.5	4.0	3.0	0.0	4.0
Merged-chr7-101848712-2	chr7	101848212	101849212	+	654.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303239, intron 2 of 5)	intron (NM_001303239, intron 2 of 5)	-3381.0	NM_008035	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-109865738-3	chr7	109865286	109866286	+	654.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020052)	promoter-TSS (NM_020052)	-107.0	NM_020052	56788.0	Mm.40447	NM_020052	ENSMUSG00000007279	Scube2	4932442O19Rik|Cegf1|Cegp1	signal peptide, CUB domain, EGF-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21733954-2	chr19	21733454	21734454	+	654.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44386.0	NM_001033759	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149838985-3	chr4	149838492	149839492	+	654.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64725.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	4.0	6.0	0.5	0.0	0.0	1.0
Merged-chr17-6019990-2	chr17	6019467	6020467	+	654.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357667, intron 14 of 24)	intron (NM_001357667, intron 14 of 24)	12387.0	NM_001290698	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	4.5
Merged-chr5-16556579-2	chr5	16556079	16557079	+	654.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289458, intron 2 of 18)	intron (NM_001289458, intron 2 of 18)	2678.0	NM_001289461	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106138873-2	chr1	106138365	106139365	+	654.166626	f0_balb.idr|f0_c57.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	32659.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45827255-2	chr2	45826755	45827755	+	654.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	130650.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55468374-2	chr13	55467888	55468888	+	654.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001030296, intron 1 of 2)	B1F|SINE|Alu	4121.0	NM_001030296	432763.0	Mm.315457	NM_001030296	ENSMUSG00000034686	Prr7	XM_484263	proline rich 7 (synaptic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5097256-3	chr6	5096758	5097758	+	654.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 6 of 15)	intron (NM_181595, intron 6 of 15)	96688.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131482464-3	chr1	131481968	131482968	+	654.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	44893.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-110558529-3	chr13	110558012	110559012	+	654.083313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	163468.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	4.0	12.0	2.0	5.0	1.5	1.0
Merged-chr13-59818527-4	chr13	59818041	59819041	+	654.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153538, intron 2 of 27)	intron (NM_153538, intron 2 of 27)	4606.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-29979073-2	chr13	29978573	29979573	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010093, intron 1 of 6)	intron (NM_010093, intron 1 of 6)	5318.0	NM_001289920	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100818263-2	chr11	100817763	100818763	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113563, intron 1 of 18)	(CA)n|Simple_repeat|Simple_repeat	4307.0	NM_011489	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142893988-2	chr7	142893488	142894488	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009377, intron 12 of 12)	intron (NM_009377, intron 12 of 12)	5978.0	NM_009377	21823.0	Mm.1292	NM_009377	ENSMUSG00000000214	Th	-	tyrosine hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-159256946-2	chr3	159256446	159257446	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040750, intron 4 of 4)	L1VL4|LINE|L1	180582.0	NR_040750	624759.0	Mm.491054	NR_040750	ENSMUSG00000106053	Gm20752	-	predicted gene, 20752	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69724036-1	chr12	69723536	69724536	+	654.0	f1_c57bl6.idr	promoter-TSS (NM_001361690)	promoter-TSS (NM_001361690)	838.0	NM_145443	217666.0	Mm.103362	NM_145443	ENSMUSG00000020988	L2hgdh	BC016226	L-2-hydroxyglutarate dehydrogenase	protein-coding	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr17-10343890-2	chr17	10343390	10344390	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19288.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16381147-2	chr19	16380647	16381647	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 6 of 6)	intron (NM_008139, intron 6 of 6)	-54520.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32388036-1	chr4	32387536	32388536	+	654.0	f0_balb.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-29399.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	1.5	4.0	6.5	2.0	2.0	7.0
Merged-chr6-49057908-2	chr6	49057395	49058395	+	654.0	f0_balb.idr|f1_balb.idr	3' UTR (NM_053110, exon 11 of 11)	3' UTR (NM_053110, exon 11 of 11)	-15900.0	NM_029353	75593.0	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	4.0	0.0	2.0	13.0	0.0	7.5
Merged-chr7-132598987-2	chr7	132598487	132599487	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009123, intron 1 of 1)	intron (NM_009123, intron 1 of 1)	650.0	NM_009123	20231.0	Mm.334281	NM_009123	ENSMUSG00000048528	Nkx1-2	Nkx-1.1|Nkx-1.2|Sax1	NK1 homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82907842-2	chr11	82907342	82908342	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145431, intron 2 of 12)	intron (NM_145431, intron 2 of 12)	553.0	NM_145431	217011.0	Mm.29176	NM_145431	ENSMUSG00000020692	Nle1	AL022765|BC018399|Nle|l11Jus1|l11Jus4	notchless homolog 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-145139259-2	chr5	145138759	145139759	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033313, intron 1 of 5)	intron (NM_001033313, intron 1 of 5)	830.0	NM_001033313	231887.0	Mm.188851	NM_001033313	ENSMUSG00000029623	Pdap1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-116966977-2	chr2	116966477	116967477	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66825.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-10711635-2	chr8	10711135	10712135	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	170819.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-92936065-2	chr4	92935565	92936565	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	399446.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73121367-2	chr14	73120867	73121867	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-21143.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121248193-3	chr9	121247691	121248691	+	654.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_177589, intron 16 of 36)	intron (NM_177589, intron 16 of 36)	28981.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	0.5	0.5	3.0	1.5	0.5	0.0
Merged-chr1-175660097-1	chr1	175659597	175660597	+	654.0	f0_balb.idr	3' UTR (NM_133809, exon 15 of 15)	3' UTR (NM_133809, exon 15 of 15)	27904.0	NM_133809	98256.0	Mm.27217	NM_133809	ENSMUSG00000039783	Kmo	AI046660	kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)	protein-coding	10.0	2.5	4.5	5.5	10.0	12.0
Merged-chr11-67350520-2	chr11	67350020	67351020	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081250, intron 20 of 38)	intron (NM_001081250, intron 20 of 38)	23417.0	NM_001081250	544791.0	Mm.461064	NM_001081250	ENSMUSG00000060180	Myh13	MyHC-eo	myosin, heavy polypeptide 13, skeletal muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21889599-2	chr14	21889099	21890099	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40689.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-117915634-1	chr6	117915134	117916134	+	654.0	f0_balb.idr	intron (NM_001166428, intron 1 of 3)	intron (NM_001166428, intron 1 of 3)	-1660.0	NM_001166427	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-104054858-2	chr14	104054358	104055358	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27716.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58718704-2	chr1	58718204	58719204	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	5418.0	NM_001355056	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	5.5	0.0	3.5	3.5	1.0	2.0
Merged-chr1-166125097-1	chr1	166124597	166125597	+	654.0	f0_balb.idr	intron (NM_001033344, intron 2 of 5)	intron (NM_001033344, intron 2 of 5)	2801.0	NM_001033344	240892.0	Mm.35315	NM_001033344	ENSMUSG00000026564	Dusp27	C130085G02Rik|Gm209	dual specificity phosphatase 27 (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119825594-1	chr8	119825094	119826094	+	654.0	f1_balb.idr	intron (NM_028071, intron 2 of 3)	URR1B|DNA|hAT-Charlie	14985.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115557796-2	chr5	115557291	115558291	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1676.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr10-127045460-2	chr10	127044960	127045960	+	654.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010792)	TTS (NM_010792)	-2786.0	NM_010009	13115.0	Mm.6216	NM_010009	ENSMUSG00000006724	Cyp27b1	Cp2b|Cyp1|Cyp27b|Cyp40|P450c1|Pddr|Vdd1|Vddr|VddrI|Vdr	cytochrome P450, family 27, subfamily b, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111063872-2	chr9	111063376	111064376	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6358.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	11.0	8.0	4.5	8.0	22.0	20.5
Merged-chr7-35176254-2	chr7	35175754	35176754	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10131.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	0.0	1.5	7.0	0.0	0.0	0.0
Merged-chr10-21946251-1	chr10	21945751	21946751	+	654.0	f1_balb.idr	intron (NM_001161845, intron 2 of 13)	(TTTA)n|Simple_repeat|Simple_repeat	-32421.0	NM_001161847	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	12.0	26.5	27.0	3.5	28.5	29.0
Merged-chr16-92383591-2	chr16	92383091	92384091	+	654.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105054)	promoter-TSS (NR_105054)	-908.0	NR_105054	101056236.0	Mm.149108	NR_105054		Gm29805	-	predicted gene, 29805	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35422487-2	chr17	35421987	35422987	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-2360.0	NM_023124	15019.0	Mm.486287	NM_023124		H2-Q8	H-2Q8|MMS10-T|Ms10t|Qa-2|Qa-8|Qa8	histocompatibility 2, Q region locus 8	protein-coding	1.0	0.5	1.0	1.0	0.5	1.0
Merged-chr13-30976813-2	chr13	30976313	30977313	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2766.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-69890606-2	chr10	69890106	69891106	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_170729, intron 16 of 40)	intron (NM_170729, intron 16 of 40)	-34926.0	NM_170687	11735.0	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152743400-1	chr2	152742900	152743900	+	654.0	f1_balb.idr	Intergenic	(CAGAGA)n|Simple_repeat|Simple_repeat	7149.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	4.0	0.0	2.5	0.5	10.5	7.5
Merged-chr19-46393049-1	chr19	46392549	46393549	+	654.0	f1_balb.idr	intron (NM_016860, intron 1 of 10)	B1_Mus2|SINE|Alu	2686.0	NM_016860	54130.0	Mm.3118	NM_016860	ENSMUSG00000025228	Actr1a	Arp1|alpha-Arp1	ARP1 actin-related protein 1A, centractin alpha	protein-coding	1.5	0.0	0.0	0.0	0.0	1.0
Merged-chr1-105680761-2	chr1	105680261	105681261	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029349, intron 2 of 27)	B3|SINE|B2	16900.0	NM_029349	227446.0	Mm.337339	NM_029349	ENSMUSG00000026319	2310035C23Rik	6430401N10|Kiaa1468|Relch|mKIAA1468	RIKEN cDNA 2310035C23 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114494229-3	chr7	114493733	114494733	+	654.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011055, intron 2 of 15)	intron (NM_011055, intron 2 of 15)	68739.0	NR_110407	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	2.5	1.0	9.5	4.0	2.0	6.5
Merged-chr2-125802128-2	chr2	125801667	125802667	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19297.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	0.0	1.0	0.5	0.0	6.5	0.0
Merged-chr18-9506734-2	chr18	9506235	9507235	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56581.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0.0	13.5	1.0	0.5	0.0	4.0
Merged-chr10-80574601-2	chr10	80574101	80575101	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_078477, intron 1 of 1)	B1_Mus1|SINE|Alu	2695.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-52231661-2	chr1	52231161	52232161	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081081, intron 1 of 17)	intron (NM_001081081, intron 1 of 17)	1571.0	NM_001081081	14660.0	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	7.0	5.5	0.5	17.0	0.5	0.0
Merged-chr14-66224415-2	chr14	66223915	66224915	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	ID_B1|SINE|B4	-10591.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52843554-1	chr6	52843054	52844054	+	654.0	f1_balb.idr	intron (NM_173406, intron 2 of 4)	intron (NM_173406, intron 2 of 4)	66066.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70781399-1	chr8	70780899	70781899	+	654.0	f1_balb.idr	intron (NM_199308, intron 21 of 25)	intron (NM_199308, intron 21 of 25)	4537.0	NR_029440	72093.0	Mm.271208	NR_029440		2010320M18Rik	-	RIKEN cDNA 2010320M18 gene	ncRNA	0.0	0.0	2.0	0.0	1.0	0.0
Merged-chr9-96437246-2	chr9	96436746	96437746	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41429.0	NM_011279	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-52160839-2	chr15	52160339	52161339	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	120732.0	NM_175503	239435.0	Mm.24204	NM_175503	ENSMUSG00000068522	Aard	A5D3|AV328152	alanine and arginine rich domain containing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135619419-2	chr1	135618919	135619919	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21643.0	NR_151586	215714.0	Mm.472859	NM_175447		Gm4793	EG215714	predicted gene 4793	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81647208-1	chr15	81646708	81647708	+	654.0	f1_c57bl6.idr	intron (NM_177821, intron 29 of 30)	B3A|SINE|B2	-16681.0	NM_001289712	214669.0	Mm.280768	NM_145993	ENSMUSG00000022394	L3mbtl2	4732493N06Rik|M4mbt	L3MBTL2 polycomb repressive complex 1 subunit	protein-coding	1.0	1.0	0.0	0.0	0.0	0.0
Merged-chr2-164876453-1	chr2	164875953	164876953	+	654.0	f1_balb.idr	Intergenic	Intergenic	-2915.0	NM_146129	228866.0	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	12.5	25.5	23.0	3.5	5.0	12.0
Merged-chr6-125588786-2	chr6	125588286	125589286	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 7 of 51)	intron (NM_011708, intron 7 of 51)	35838.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119453799-1	chr13	119453299	119454299	+	654.0	f0_balb.idr	intron (NM_145457, intron 9 of 10)	intron (NM_145457, intron 9 of 10)	-8960.0	NR_153825	67392.0	Mm.390641	NM_026127	ENSMUSG00000062822	4833420G17Rik	2210017J06Rik|5730533D17Rik|AW107518|C85193	RIKEN cDNA 4833420G17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-53122982-2	chr2	53122482	53123482	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 22 of 26)	intron (NM_172409, intron 22 of 26)	68205.0	NM_018785	56194.0	Mm.257474	NM_018785	ENSMUSG00000061136	Prpf40a	2810012K09Rik|FBP-11|FBP11|Fnbp11|Fnbp3	pre-mRNA processing factor 40A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116431990-2	chr11	116431494	116432494	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2100.0	NM_176902	319370.0	Mm.258466	NM_176902	ENSMUSG00000050628	Ubald2	1110014K08Rik|D030012E24Rik|Fam100b	UBA-like domain containing 2	protein-coding	3.0	0.5	1.0	2.0	0.0	1.5
Merged-chr14-34311925-2	chr14	34311425	34312425	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008133, intron 1 of 12)	intron (NM_008133, intron 1 of 12)	1198.0	NM_008133	14661.0	Mm.10600	NM_008133	ENSMUSG00000021794	Glud1	AI118167|Gdh-X|Glud|Gludl	glutamate dehydrogenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99334383-2	chr15	99333883	99334883	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310622, intron 4 of 25)	intron (NM_001310622, intron 4 of 25)	31099.0	NM_001348256	54614.0	Mm.358668	NM_018786	ENSMUSG00000023007	Prpf40b	2610317D23Rik|Hypc	pre-mRNA processing factor 40B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-104849712-2	chr2	104849212	104850212	+	654.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178695, exon 1 of 6)	5' UTR (NM_178695, exon 1 of 6)	138.0	NM_178695	228413.0	Mm.259609	NM_178695	ENSMUSG00000027171	Prrg4	9930111I18Rik|TMG4	proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)	protein-coding	1.0	0.0	3.5	3.5	0.0	4.5
Merged-chr19-9935098-2	chr19	9934598	9935598	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35565.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	10.5	0.0	2.0	0.0	1.5	0.0
Merged-chr17-78730086-2	chr17	78729545	78730545	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011500, intron 1 of 17)	intron (NM_011500, intron 1 of 17)	6515.0	NM_011500	268980.0	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	5.5	11.0	6.0	14.0	31.0	11.5
Merged-chr10-104386933-1	chr10	104386433	104387433	+	654.0	f1_balb.idr	Intergenic	Intergenic	99664.0	NR_105838	102465222.0		NR_105838	ENSMUSG00000099264	Mir6411	Gm27767|mmu-mir-6411	microRNA 6411	ncRNA	5.5	1.5	2.0	2.5	3.5	10.0
Merged-chr5-115469223-2	chr5	115468723	115469723	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151517, intron 1 of 2)	intron (NR_151517, intron 1 of 2)	3081.0	NM_001356587	18778.0	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0.5	0.0	0.5	0.0	0.0	1.5
Merged-chr12-108753700-2	chr12	108753200	108754200	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-39611.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-121143711-2	chr4	121143211	121144211	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-34485.0	NM_001081312	69469.0	Mm.481120	NM_001081312	ENSMUSG00000078577	Tmco2	1700028F16Rik	transmembrane and coiled-coil domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95146257-3	chr11	95145738	95146738	+	654.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007867)	promoter-TSS (NM_007867)	-437.0	NM_007867	13394.0	Mm.439766	NM_007867	ENSMUSG00000020871	Dlx4	Dlx-4|Dlx7	distal-less homeobox 4	protein-coding	1.0	0.0	0.0	3.0	10.0	1.0
Merged-chr17-84109868-2	chr17	84109368	84110368	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31208.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68451566-1	chr11	68451066	68452066	+	654.0	f0_balb.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	19441.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125480649-2	chr6	125480149	125481149	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007657, intron 1 of 7)	intron (NM_007657, intron 1 of 7)	14111.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	3.0	0.0	0.0	0.0	0.5	1.5
Merged-chr18-67271126-1	chr18	67270626	67271626	+	654.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-18097.0	NM_053261	114663.0	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	0.0	0.5	0.0	0.0	0.0	5.5
Merged-chr5-12034216-2	chr5	12033716	12034716	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	116173.0	NM_001177510	545732.0	Mm.389066	NM_001177510	ENSMUSG00000067848	4933402N22Rik	-	RIKEN cDNA 4933402N22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-5197510-1	chr10	5197010	5198010	+	654.0	f0_balb.idr	intron (NM_001347711, intron 90 of 145)	intron (NM_001347711, intron 90 of 145)	-2803.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90909813-2	chr5	90909313	90910313	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	5914.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0.0	0.0	0.0	0.0	2.0	1.0
Merged-chr17-35976669-2	chr17	35976169	35977169	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282012, intron 2 of 3)	intron (NM_001282012, intron 2 of 3)	2354.0	NM_001282012	75210.0	Mm.40036	NM_145487	ENSMUSG00000038500	Prr3	4930540G07Rik|Cat56	proline-rich polypeptide 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38311463-2	chr18	38310963	38311963	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361268, intron 8 of 10)	B3A|SINE|B2	14658.0	NM_001164621	56736.0	Mm.228903	NM_020012	ENSMUSG00000060450	Rnf14	2310075C09Rik|2610005D23Rik|AA986456|AU041447|D18Ertd188e|D7Bwg0165e|Triad2	ring finger protein 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19165184-2	chr7	19164684	19165684	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080815, intron 1 of 13)	intron (NM_001080815, intron 1 of 13)	943.0	NM_001080815	381853.0	Mm.333633	NM_001080815	ENSMUSG00000030406	Gipr	GIP-R|Gm1081|Gm160	gastric inhibitory polypeptide receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76446150-2	chr11	76445650	76446650	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 15 of 21)	intron (NM_001346670, intron 15 of 21)	22315.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-93992976-2	chr11	93992476	93993476	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3115.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	3.0	0.5	0.0	3.5	7.0	1.5
Merged-chr9-95512697-2	chr9	95512215	95513215	+	654.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001114977)	promoter-TSS (NM_001114977)	-719.0	NM_001357974	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	234.0	600.5	419.0	158.5	463.5	372.5
Merged-chr4-66404216-1	chr4	66403716	66404716	+	654.0	f1_c57bl6.idr	exon (NM_019514, exon 1 of 22)	exon (NM_019514, exon 1 of 22)	267.0	NM_019514	56079.0	Mm.445312	NM_019514	ENSMUSG00000028373	Astn2	1d8|Astnl|bM452J22.1	astrotactin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84759863-1	chr2	84759363	84760363	+	654.0	f1_balb.idr	Intergenic	B1F|SINE|Alu	15566.0	NM_009776	12258.0	Mm.38888	NM_009776	ENSMUSG00000023224	Serping1	C1INH|C1nh	serine (or cysteine) peptidase inhibitor, clade G, member 1	protein-coding	10.5	0.0	1.0	9.0	4.0	0.5
Merged-chr16-20085433-3	chr16	20084931	20085931	+	654.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12123.0	NM_029436	75785.0	Mm.392450	NM_029436	ENSMUSG00000062901	Klhl24	1110046J11Rik|4930429H24Rik|6530402O20Rik|C85082	kelch-like 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85275502-1	chr1	85275002	85276002	+	654.0	f1_balb.idr	Intergenic	Intergenic	-4936.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45263281-6	chr9	45262779	45263779	+	653.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136903, intron 4 of 5)	B4A|SINE|B4	3428.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-23617852-3	chr5	23617349	23618349	+	653.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359174, intron 2 of 16)	MIRb|SINE|MIR	-1278.0	NM_009274	20817.0	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	18.0	25.5	28.5	17.5	23.0	26.5
Merged-chr9-95328686-2	chr9	95328188	95329188	+	653.875	f0_balb.idr|f1_balb.idr	Intergenic	Lx4A|LINE|L1	78582.0	NM_018763	54371.0	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	0.0	0.5	2.0	1.0	3.0	2.5
Merged-chr17-24021870-2	chr17	24021368	24022368	+	653.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-16375.0	NM_175440	213171.0	Mm.133083	NM_175440	ENSMUSG00000050762	Prss27	CAPH2|Mpn|marapsin	protease, serine 27	protein-coding	0.0	13.5	4.0	0.0	16.0	1.0
Merged-chr2-164677214-2	chr2	164676709	164677709	+	653.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-3122.0	NM_001161806	629761.0	Mm.389336	NM_001161806	ENSMUSG00000078940	Wfdc11	-	WAP four-disulfide core domain 11	protein-coding	18.0	45.0	43.5	9.5	12.5	10.0
Merged-chr10-96625788-3	chr10	96625273	96626273	+	653.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8772.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55184354-2	chr13	55183854	55184854	+	653.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25428.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96449775-2	chr9	96449275	96450275	+	653.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	28900.0	NM_011279	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83645391-2	chr6	83644840	83645840	+	653.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_016751, exon 7 of 7)	exon (NM_016751, exon 7 of 7)	10776.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	1.5	7.0	0.5	0.0	12.0	5.0
Merged-chr10-19016865-2	chr10	19016365	19017365	+	653.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1455.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145803141-2	chr2	145802641	145803641	+	653.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	(CAAA)n|Simple_repeat|Simple_repeat	17025.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120574331-2	chr8	120573831	120574831	+	653.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 12 of 15)	intron (NM_001145896, intron 12 of 15)	14744.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-131917153-2	chr4	131916653	131917653	+	653.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_102394, intron 1 of 2)	intron (NR_102394, intron 1 of 2)	2876.0	NR_102394	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34193871-2	chr7	34193371	34194371	+	653.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_026549, intron 3 of 6)	B1_Mus2|SINE|Alu	2799.0	NM_026549	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-89365017-2	chr12	89364517	89365517	+	653.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198587, intron 9 of 19)	intron (NM_001198587, intron 9 of 19)	411627.0	NM_172544	18191.0	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-31544367-3	chr10	31543860	31544860	+	653.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146349, intron 1 of 5)	L1M5|LINE|L1	65365.0	NM_001146349	268291.0	Mm.295212	NM_001146349	ENSMUSG00000063760	Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124321764-4	chr6	124321278	124322278	+	653.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170395, intron 11 of 16)	RLTR19-int|LTR|ERVK	17127.0	NM_053094	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-143135105-3	chr6	143134606	143135606	+	653.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153819, intron 5 of 8)	intron (NR_153819, intron 5 of 8)	18825.0	NR_153819	102633311.0	Mm.333484	NR_153819		Gm31108	Gm31169	predicted gene, 31108	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-13877566-3	chr17	13877068	13878068	+	653.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151731, intron 22 of 33)	intron (NR_151731, intron 22 of 33)	-70805.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102819763-2	chr2	102819206	102820206	+	653.666687	f0_c57.idr|f1_c57bl6.idr	intron (NM_001039150, intron 13 of 13)	intron (NM_001039150, intron 13 of 13)	-72946.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	16.5	19.5	19.5	16.5	28.5	16.0
Merged-chr1-87218144-2	chr1	87217644	87218644	+	653.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039169, intron 1 of 6)	intron (NM_001039169, intron 1 of 6)	4205.0	NM_001039169	26987.0	Mm.227183	NM_023314	ENSMUSG00000026254	Eif4e2	2700069E09Rik|AI036339|AV129531|D0H0S6743E|Eif4el3	eukaryotic translation initiation factor 4E member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137728914-2	chr4	137728435	137729435	+	653.666626	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_138591, exon 24 of 24)	non-coding (NR_138591, exon 24 of 24)	4474.0	NR_138592	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	5.5	0.0	0.0	0.0	0.0	4.0
Merged-chr10-95303084-2	chr10	95302584	95303584	+	653.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	PB1D7|SINE|Alu	20625.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-46153621-2	chr9	46153121	46154121	+	653.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 3 of 24)	intron (NM_027498, intron 3 of 24)	-75009.0	NM_009692	11806.0	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	2.0	2.0	2.0	2.5	2.0	2.0
Merged-chr13-77166218-3	chr13	77165733	77166733	+	653.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081353, intron 1 of 3)	MER21C|LTR|ERVL	30697.0	NM_001145676	72371.0	Mm.81475	NM_028215	ENSMUSG00000071252	2210408I21Rik	-	RIKEN cDNA 2210408I21 gene	protein-coding	8.5	11.0	7.5	16.5	5.0	4.5
Merged-chr8-22974889-5	chr8	22974389	22975389	+	653.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277280)	promoter-TSS (NM_001277280)	53.0	NM_001277280	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr10-37143181-2	chr10	37142681	37143681	+	653.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-4255.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61877790-3	chr8	61877282	61878282	+	653.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081390, exon 2 of 20)	exon (NM_001081390, exon 2 of 20)	24908.0	NM_001081390	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50816721-3	chr15	50816218	50817218	+	653.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	72331.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121252820-3	chr5	121252330	121253330	+	653.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181421, intron 1 of 75)	intron (NM_181421, intron 1 of 75)	32611.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	5.5	2.0	4.0	4.0	1.5	2.5
Merged-chr12-103144346-2	chr12	103143846	103144846	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081017, intron 38 of 48)	intron (NM_001081017, intron 38 of 48)	97800.0	NM_133364	170952.0	Mm.217019	NM_133364	ENSMUSG00000041669	Prima1	B230212M13Rik|BB120497|PRiMA	proline rich membrane anchor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100098984-2	chr13	100098484	100099484	+	653.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081061, exon 2 of 39)	exon (NM_001081061, exon 2 of 39)	5086.0	NM_001081061	544971.0	Mm.288546	NM_001081061	ENSMUSG00000049658	Bdp1	AI662220|AW049390|AW456745|B130055N23Rik|G630013P12Rik|TAF3B1|TFC5|TFIIIB150|TFIIIB90|Tfnr|mKIAA1241	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88561295-2	chr5	88560795	88561795	+	653.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-3745.0	NM_001289774	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63360239-2	chr4	63359739	63360739	+	653.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013623)	TTS (NM_013623)	-2210.0	NM_011016	18406.0	Mm.14173	NM_011016	ENSMUSG00000061540	Orm2	Agp1|Orm-2	orosomucoid 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32683586-2	chr16	32683086	32684086	+	653.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_016788)	TTS (NM_016788)	10432.0	NM_001289443	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0.0	0.5	1.5	3.0	0.0	1.0
Merged-chr19-17326725-2	chr19	17326226	17327226	+	653.5	f0_balb.idr|f1_c57bl6.idr	3' UTR (NM_001136484, exon 3 of 3)	3' UTR (NM_001136484, exon 3 of 3)	12779.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	13.5	46.0	32.5	15.5	11.0	12.0
Merged-chr7-145279790-2	chr7	145279290	145280290	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132643, intron 2 of 22)	intron (NR_132643, intron 2 of 22)	4221.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	0.5	6.0	5.5	7.0	3.0	0.0
Merged-chr10-115382337-2	chr10	115381837	115382837	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025780, intron 1 of 2)	B1_Mur3|SINE|Alu	2098.0	NM_025780	66816.0	Mm.32314	NM_025780	ENSMUSG00000020137	Thap2	2900040O07Rik|9030625G08Rik|AI450385|AI649097	THAP domain containing, apoptosis associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87656977-2	chr16	87656477	87657477	+	653.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41977.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.0	3.5	2.0	7.0	5.0	8.0
Merged-chr9-25503840-2	chr9	25503340	25504340	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	22243.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-36762020-2	chr8	36761563	36762563	+	653.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 5 of 17)	intron (NM_001194940, intron 5 of 17)	-29009.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	10.0	18.5	2.5	10.0	2.5	10.5
Merged-chr11-116114058-2	chr11	116113558	116114558	+	653.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3823.0	NM_172570	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-19299003-2	chr2	19298503	19299503	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081083, intron 17 of 19)	MTD|LTR|ERVL-MaLR	-45314.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78511413-2	chr15	78510913	78511913	+	653.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16347.0	NM_008368	16185.0	Mm.35287	NM_008368	ENSMUSG00000068227	Il2rb	CD122|IL-15Rbeta|IL15Rbeta|Il-2/15Rbeta|Il-2Rbeta|p70	interleukin 2 receptor, beta chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31303597-2	chr17	31303097	31304097	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001242427, intron 2 of 19)	intron (NM_001242427, intron 2 of 19)	7373.0	NM_001242427	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122872375-2	chr6	122871875	122872875	+	653.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2182.0	NM_026267	67602.0	Mm.288114	NM_026267	ENSMUSG00000030327	Necap1	1200016B17Rik|AI747569|mFLJ00061	NECAP endocytosis associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-194312464-2	chr1	194311964	194312964	+	653.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89705.0	NR_040477	74942.0	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-23923245-2	chr1	23922745	23923745	+	653.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028534)	promoter-TSS (NM_028534)	-864.0	NM_028534	98366.0	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37998854-2	chr1	37998354	37999354	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198303, intron 1 of 23)	intron (NM_198303, intron 1 of 23)	844.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-30519683-2	chr3	30519183	30520183	+	653.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-10008.0	NM_021442	14013.0	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51332309-2	chr3	51331809	51332809	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 1 of 9)	B1_Mur4|SINE|Alu	8335.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73192780-2	chr15	73192280	73193280	+	653.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-7833.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-119882020-2	chr7	119881520	119882520	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163703, intron 1 of 2)	intron (NM_001163703, intron 1 of 2)	13438.0	NM_173408	233805.0	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	2.0	0.0	2.0	2.0	12.0	4.0
Merged-chr17-80171233-2	chr17	80170733	80171733	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176963, intron 4 of 6)	intron (NM_176963, intron 4 of 6)	36072.0	NM_001195486	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-114512208-2	chr10	114511708	114512708	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146241, intron 7 of 18)	intron (NM_146241, intron 7 of 18)	289162.0	NM_146241	237553.0	Mm.445550	NM_146241	ENSMUSG00000050663	Trhde	9330155P21Rik	TRH-degrading enzyme	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152367975-2	chr2	152367475	152368475	+	653.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001009948)	TTS (NM_001009948)	8591.0	NM_001009948	228777.0	Mm.330667	NM_001009948	ENSMUSG00000059361	Nrsn2	Gm123|Neurensin-2	neurensin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-60184035-2	chr16	60183535	60184535	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007938, intron 5 of 17)	Lx3A|LINE|L1	421496.0	NM_007938	13840.0	Mm.455790	NM_007938	ENSMUSG00000055540	Epha6	Ehk2|Hek12|m-ehk2	Eph receptor A6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97575473-2	chr15	97574973	97575973	+	653.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	130349.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81854815-2	chr15	81854330	81855330	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020507, intron 1 of 1)	B3A|SINE|B2	3496.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	7.0	1.0	2.5	3.0	10.5	3.5
Merged-chr2-27023590-2	chr2	27023090	27024090	+	653.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172659, exon 7 of 10)	exon (NM_172659, exon 7 of 10)	4408.0	NM_172659	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72262660-2	chr5	72262160	72263160	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 11 of 22)	intron (NR_003966, intron 11 of 22)	59317.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53672228-2	chr18	53671728	53672728	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040349, intron 1 of 2)	B3A|SINE|B2	24077.0	NR_040349	100502945.0	Mm.376937	NR_040349		Gm19466	-	predicted gene, 19466	ncRNA	0.0	4.0	3.5	2.0	12.5	3.5
Merged-chr6-42341435-2	chr6	42340935	42341935	+	653.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-8393.0	NM_001289619	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-162929557-2	chr2	162929057	162930057	+	653.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1951.0	NM_026499	67996.0	Mm.24042	NM_026499	ENSMUSG00000016921	Srsf6	1210001E11Rik|AI314910|AW146126|Sfrs6	serine/arginine-rich splicing factor 6	protein-coding	4.5	9.0	5.0	16.5	1.5	2.5
Merged-chr5-142471935-2	chr5	142471435	142472435	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172725, intron 9 of 16)	PB1D11|SINE|Alu	8004.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102222763-2	chr11	102222263	102223263	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001284248, intron 2 of 28)	intron (NM_001284248, intron 2 of 28)	7387.0	NR_106179	102465892.0		NR_106179	ENSMUSG00000098863	Mir8101	Gm27705|mmu-mir-8101	microRNA 8101	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59867507-2	chr15	59867007	59868007	+	653.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72548.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.0	2.5	0.0	6.0	0.5	5.0
Merged-chr8-110130810-2	chr8	110130310	110131310	+	653.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR37-int|LTR|ERV1	37396.0	NM_007586	12308.0	Mm.2755	NM_007586	ENSMUSG00000003657	Calb2	CR	calbindin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150155895-2	chr4	150155395	150156395	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085529, intron 4 of 11)	ORR1B2|LTR|ERVL-MaLR	6923.0	NM_001085529	435818.0	Mm.359648	NM_001085529	ENSMUSG00000062064	Slc2a7	-	solute carrier family 2 (facilitated glucose transporter), member 7	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr2-65239173-2	chr2	65238673	65239673	+	653.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027225)	promoter-TSS (NM_027225)	-547.0	NM_027225	319876.0	Mm.34159	NM_027225	ENSMUSG00000034903	Cobll1	1810047P18Rik|Coblr1|D430044D16Rik	Cobl-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95143721-2	chr10	95143221	95144221	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_131146, intron 2 of 3)	(CAGA)n|Simple_repeat|Simple_repeat	2104.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9373430-2	chr18	9372930	9373930	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026484, intron 3 of 9)	intron (NM_026484, intron 3 of 9)	76724.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	12.0	1.0	5.5	4.5	10.5	1.5
Merged-chr13-116711783-2	chr13	116711283	116712283	+	653.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	126395.0	NR_153406	74680.0	Mm.488118	NR_153406	ENSMUSG00000114290	4930435F18Rik	-	RIKEN cDNA 4930435F18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-31279614-2	chr9	31279114	31280114	+	653.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8213.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87798807-2	chr17	87798307	87799307	+	653.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199251)	promoter-TSS (NM_199251)	-813.0	NM_199251	210741.0	Mm.312046	NM_199251	ENSMUSG00000050138	Kcnk12	mntk1	potassium channel, subfamily K, member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55505061-2	chr12	55504561	55505561	+	653.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-12414.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47739634-3	chr9	47739085	47740085	+	653.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	78623.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	18.0	43.0	40.0	7.0	55.5	40.5
Merged-chr15-13084306-2	chr15	13083806	13084806	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007666, intron 2 of 11)	intron (NM_007666, intron 2 of 11)	89369.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3788891-2	chr4	3788391	3789391	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 12 of 12)	B2_Mm2|SINE|B2	46764.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	8.0	4.0	4.0	8.0	4.0	8.0
Merged-chr16-85116446-2	chr16	85115946	85116946	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 2 of 15)	intron (NM_001198825, intron 2 of 15)	57261.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	3.0	1.5	2.0	1.5	1.5	2.0
Merged-chr16-43948033-2	chr16	43947524	43948524	+	653.5	f0_balb.idr|f1_balb.idr	intron (NM_027801, intron 12 of 15)	MER103C|DNA|hAT-Charlie	31026.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	1.5	7.5	8.0	0.0	2.0	5.0
Merged-chr15-73604754-1	chr15	73604254	73605254	+	653.5	f0_balb.idr	intron (NM_001357747, intron 2 of 7)	intron (NM_001357747, intron 2 of 7)	-8228.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60277062-2	chr10	60276562	60277562	+	653.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146120)	promoter-TSS (NM_001146120)	-566.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-104434519-4	chr14	104434000	104435000	+	653.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33499.0	NM_011143	18996.0	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101543700-2	chr7	101543200	101544200	+	653.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12102.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	0.0	2.5	0.0	0.0	0.0	0.0
Merged-chr10-81058238-2	chr10	81057738	81058738	+	653.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358550, intron 1 of 11)	B4|SINE|B4	1938.0	NM_001358549	52551.0	Mm.30068	NM_024499	ENSMUSG00000004937	Sgta	5330427H01Rik|AI194281|D10Ertd190e|Sgt|Stg	small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87453264-2	chr11	87452764	87453764	+	653.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	25673.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125444066-2	chr6	125443590	125444590	+	653.333374	f0_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	50670.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	0.5	8.0	3.0	2.0	1.5	3.0
Merged-chr12-38644129-2	chr12	38643629	38644629	+	653.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29608.0	NR_045943	73867.0	Mm.78933	NR_045943	ENSMUSG00000112967	4930428E07Rik	-	RIKEN cDNA 4930428E07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61452706-2	chr14	61452206	61453206	+	653.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12759.0	NM_008466	16648.0	Mm.25548	NM_008466	ENSMUSG00000021929	Kpna3	IPOA4	karyopherin (importin) alpha 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78848571-3	chr15	78847996	78848996	+	653.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027219, intron 2 of 2)	B1_Mur2|SINE|Alu	5849.0	NM_027219	104445.0	Mm.307488	NM_027219	ENSMUSG00000049521	Cdc42ep1	1810058K22Rik|AA980734|Borg5|CEP1|MSE55	CDC42 effector protein (Rho GTPase binding) 1	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr14-70776126-3	chr14	70775617	70776617	+	653.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010071, intron 3 of 4)	intron (NM_010071, intron 3 of 4)	1736.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	28.5	87.5	48.0	33.0	51.5	76.5
Merged-chr9-99110388-3	chr9	99109871	99110871	+	653.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 2 of 23)	intron (NM_029094, intron 2 of 23)	29840.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117697475-2	chr8	117696975	117697975	+	653.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4471.0	NM_008290	15486.0	Mm.276466	NM_008290	ENSMUSG00000031844	Hsd17b2	AI194836|AI194967|AI255511	hydroxysteroid (17-beta) dehydrogenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-149460933-3	chr3	149460436	149461436	+	653.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	186199.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.0	4.0	0.0	4.0	1.0	0.0
Merged-chr10-91191506-3	chr10	91191004	91192004	+	653.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19885.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96541032-3	chr10	96540548	96541548	+	653.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger6a|DNA|TcMar-Tigger	-75953.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124683576-2	chr2	124683076	124684076	+	653.3000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29995.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40319808-2	chr9	40319308	40320308	+	653.299988	f1_balb.idr|f1_c57bl6.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	1515.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49471522-3	chr7	49471019	49472019	+	653.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 10 of 37)	intron (NM_175272, intron 10 of 37)	165316.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-38477517-2	chr5	38477017	38478017	+	653.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_145559, intron 2 of 10)	intron (NM_145559, intron 2 of 10)	2789.0	NM_001102414	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150651032-2	chr2	150650532	150651532	+	653.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_080575, intron 2 of 13)	intron (NM_080575, intron 2 of 13)	-16462.0	NR_040331	109344.0	Mm.440012	NR_040331	ENSMUSG00000087406	E130215H24Rik	-	RIKEN cDNA E130215H24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37531809-4	chr1	37531327	37532327	+	653.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 2 of 15)	L1MB8|LINE|L1	4577.0	NM_001290801	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-100028861-3	chr4	100028369	100029369	+	653.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66922.0	NM_013845	26563.0	Mm.57252	NM_013845	ENSMUSG00000035305	Ror1	2810404D04Rik|Ntrkr1	receptor tyrosine kinase-like orphan receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84100373-3	chr12	84099920	84100920	+	653.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172580)	promoter-TSS (NM_172580)	-234.0	NM_172580	217700.0	Mm.49245	NM_172580	ENSMUSG00000043487	Acot6	4632408A20Rik|A330054B07|BE688602	acyl-CoA thioesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-56943832-3	chr1	56943281	56944281	+	653.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358580, intron 4 of 11)	intron (NM_001358580, intron 4 of 11)	27553.0	NM_139146	212712.0	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr11-116084150-2	chr11	116083650	116084650	+	653.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361446, intron 1 of 6)	intron (NM_001361446, intron 1 of 6)	2845.0	NM_001361446	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-119449153-4	chr6	119448643	119449643	+	653.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009525, intron 1 of 4)	(CA)n|Simple_repeat|Simple_repeat	243.0	NM_001271757	22419.0	Mm.321818	NM_009525	ENSMUSG00000030170	Wnt5b	AW545702|Wnt-5b	wingless-type MMTV integration site family, member 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74526719-3	chr11	74526210	74527210	+	653.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	63448.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158340300-3	chr2	158339761	158340761	+	653.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21248.0	NR_015463	68108.0	Mm.119198	NR_015463		Snhg17	9430008C03Rik	small nucleolar RNA host gene 17	ncRNA	6.5	0.5	0.5	5.0	1.0	0.0
Merged-chr14-34363275-3	chr14	34362766	34363766	+	653.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7873.0	NM_183278	69134.0	Mm.27156	NM_183278	ENSMUSG00000043681	Fam25c	2200001I15Rik|Fam25	family with sequence similarity 25, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76506768-2	chr14	76506337	76507337	+	653.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001177751, exon 3 of 3)	3' UTR (NM_001177751, exon 3 of 3)	2327.0	NM_009366	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0.0	6.0	0.0	0.0	5.0	1.0
Merged-chr1-184631501-1	chr1	184631001	184632001	+	653.0	f0_balb.idr	Intergenic	Intergenic	-73810.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105556966-2	chr5	105556466	105557466	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	MIR|SINE|MIR	37495.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-55307281-1	chr9	55306781	55307781	+	653.0	f0_balb.idr	Intergenic	Intergenic	-19632.0	NM_172923	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21535396-2	chr5	21534896	21535896	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199632, intron 12 of 20)	IMPB_01|Satellite|Satellite	-8131.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53513852-2	chr4	53513352	53514352	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133891, intron 3 of 15)	intron (NM_133891, intron 3 of 15)	73439.0	NM_133891	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85257632-1	chr1	85257132	85258132	+	653.0	f1_balb.idr	intron (NM_175219, intron 3 of 7)	intron (NM_175219, intron 3 of 7)	12934.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3683876-1	chr4	3683376	3684376	+	653.0	f0_balb.idr	intron (NM_001111096, intron 1 of 12)	PB1|SINE|Alu	5755.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	181.0	318.0	239.5	94.0	205.5	169.0
Merged-chr3-59201540-3	chr3	59201040	59202040	+	653.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	-6436.0	NM_001302203	84111.0	Mm.60267	NM_032399	ENSMUSG00000051431	Gpr87	-	G protein-coupled receptor 87	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51105044-2	chr14	51104547	51105547	+	653.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_021472, exon 2 of 2)	exon (NM_021472, exon 2 of 2)	9047.0	NM_201239	58809.0	Mm.202665	NM_021472	ENSMUSG00000021876	Rnase4	C730049F20Rik|Rab1	ribonuclease, RNase A family 4	protein-coding	4.0	5.5	0.0	5.5	3.0	0.5
Merged-chr9-45317465-1	chr9	45316965	45317965	+	653.0	f1_c57bl6.idr	TTS (NR_040720)	TTS (NR_040720)	-1635.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	0.0	0.0	0.5	10.0	0.0	0.5
Merged-chr2-128734845-2	chr2	128734345	128735345	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 2 of 18)	intron (NM_008587, intron 2 of 18)	35930.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	1.5	20.5	9.0	7.5	16.0	7.0
Merged-chr19-56746284-2	chr19	56745784	56746784	+	653.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	23912.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75047426-1	chr18	75046926	75047926	+	653.0	f0_balb.idr	intron (NM_027727, intron 2 of 16)	intron (NM_027727, intron 2 of 16)	28654.0	NM_027727	69190.0	Mm.173826	NM_027727	ENSMUSG00000035765	Dym	1810041M12Rik|4933427L07Rik|C030019K18Rik	dymeclin	protein-coding	1.5	8.0	5.5	2.5	8.5	4.0
Merged-chr1-157413199-2	chr1	157412714	157413714	+	653.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_177644)	promoter-TSS (NM_177644)	-619.0	NM_177644	226525.0	Mm.235028	NM_177644	ENSMUSG00000070565	Rasal2	6530401P13|A330066M24Rik	RAS protein activator like 2	protein-coding	5.5	17.0	22.5	13.0	19.5	13.5
Merged-chr11-80044543-2	chr11	80044043	80045043	+	653.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36448.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-35294525-2	chr15	35294025	35295025	+	653.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1587.0	NM_054049	107587.0	Mm.46336	NM_054049	ENSMUSG00000022330	Osr2	5430409I15Rik|Osr2A|Osr2B	odd-skipped related 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41090058-2	chr19	41089558	41090558	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011904, intron 18 of 20)	intron (NM_011904, intron 18 of 20)	-12945.0	NM_153520	226115.0	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4150542-2	chr19	4150042	4151042	+	653.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011778, exon 5 of 11)	exon (NM_011778, exon 5 of 11)	1879.0	NM_011778	23789.0	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105702367-2	chr8	105701905	105702905	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001047435, intron 2 of 2)	intron (NM_001047435, intron 2 of 2)	758.0	NM_001286345	56513.0	Mm.472753	NM_019695	ENSMUSG00000005699	Pard6a	0710008C04Rik|2610010A15Rik|PAR-6A|PAR6alpha|Par-6|Par6|Par6c|TAX40|Tip-40	par-6 family cell polarity regulator alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66145323-1	chr5	66144823	66145823	+	653.0	f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	5655.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	5.0	27.0	14.0	2.5	26.0	17.5
Merged-chr16-38710794-2	chr16	38710294	38711294	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	2241.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89093381-3	chr3	89092881	89093881	+	653.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083807)	promoter-TSS (NM_001083807)	-18.0	NM_028188	72296.0	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80835910-2	chr10	80835410	80836410	+	653.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001013758, exon 2 of 2)	exon (NM_001013758, exon 2 of 2)	7113.0	NR_035503	100316778.0		NR_035503	ENSMUSG00000087993	Mir1982	mir-1982|mmu-mir-1982	microRNA 1982	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-36346656-2	chr19	36346156	36347156	+	653.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32411.0	NM_029508	76073.0	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81846432-1	chr15	81845932	81846932	+	653.0	f1_c57bl6.idr	Intergenic	Intergenic	11894.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	34.5	140.5	129.5	85.0	104.0	91.5
Merged-chr8-111655778-1	chr8	111655278	111656278	+	653.0	f1_c57bl6.idr	intron (NM_001358993, intron 1 of 3)	intron (NM_001358993, intron 1 of 3)	12335.0	NM_011742	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	0.0	1.5	0.0	0.0	1.0	0.5
Merged-chr2-34958316-3	chr2	34957851	34958851	+	653.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009421, intron 4 of 10)	intron (NM_009421, intron 4 of 10)	3421.0	NM_009421	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-149084347-1	chr3	149083847	149084847	+	653.0	f0_balb.idr	Intergenic	Intergenic	-129712.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	2.0	3.5	1.0	12.0	14.5	8.5
Merged-chr13-94059923-2	chr13	94059423	94060423	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 1 of 3)	intron (NM_172589, intron 1 of 3)	2127.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29454457-2	chr19	29453957	29454957	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 4 of 5)	intron (NM_021396, intron 4 of 5)	43538.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119834656-2	chr8	119834156	119835156	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	5923.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-91675578-2	chr7	91675078	91676078	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011807, intron 2 of 22)	intron (NM_011807, intron 2 of 22)	-386816.0	NM_001243046	23859.0	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs large MAGUK scaffold protein 2	protein-coding	2.0	2.0	1.0	3.0	0.5	0.0
Merged-chr2-160648886-2	chr2	160648386	160649386	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009408, intron 2 of 20)	intron (NM_009408, intron 2 of 20)	2989.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85965184-2	chr12	85964684	85965684	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	113857.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-66084007-2	chr18	66083507	66084507	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178793, intron 4 of 10)	intron (NM_178793, intron 4 of 10)	-81372.0	NM_001172062	70361.0	Mm.290857	NM_027400	ENSMUSG00000041891	Lman1	2610020P13Rik|AI326273|AU043785|C730041J05|ERGIC53|F5F8D|MCFD1|MR60|P58|gp58	lectin, mannose-binding, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-69439970-2	chr16	69439470	69440470	+	653.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	360411.0	NR_130991	78110.0	Mm.211406	NR_130991	ENSMUSG00000107073	4930428D20Rik	Gm43265	RIKEN cDNA 4930428D20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15684164-2	chr17	15683664	15684664	+	653.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-20803.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85282609-1	chr1	85282109	85283109	+	653.0	f1_balb.idr	Intergenic	Intergenic	-12043.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163055188-1	chr2	163054688	163055688	+	653.0	f0_c57.idr	intron (NM_008652, intron 1 of 13)	CpG	553.0	NM_008652	17865.0	Mm.4594	NM_008652	ENSMUSG00000017861	Mybl2	B-Myb|Bmyb	myeloblastosis oncogene-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99303097-3	chr10	99302600	99303600	+	653.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	39869.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47244419-3	chr17	47243911	47244911	+	653.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 4 of 19)	ID_B1|SINE|B4	14181.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0.5	2.0	1.5	0.5	0.0	1.0
Merged-chr2-128125156-2	chr2	128124652	128125652	+	653.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207680)	promoter-TSS (NM_207680)	-886.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr9-99390675-3	chr9	99390112	99391112	+	653.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008624, intron 4 of 5)	intron (NM_008624, intron 4 of 5)	-32082.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-70225974-1	chr10	70225474	70226474	+	653.0	f0_balb.idr	Intergenic	Intergenic	-19302.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40730353-2	chr19	40729848	40730848	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 7 of 9)	intron (NM_001304721, intron 7 of 9)	70578.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.5	5.0	1.0	0.5	1.5	2.0
Merged-chr13-117026983-2	chr13	117026483	117027483	+	653.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1467.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-108727007-1	chr5	108726507	108727507	+	653.0	f1_c57bl6.idr	Intergenic	Intergenic	32778.0	NM_054071	116701.0	Mm.35691	NM_054071	ENSMUSG00000008090	Fgfrl1	FGFR5|FGFR5beta|FGFR5gamma	fibroblast growth factor receptor-like 1	protein-coding	0.0	6.5	0.0	3.0	0.0	0.5
Merged-chr15-69079923-1	chr15	69079423	69080423	+	653.0	f1_c57bl6.idr	intron (NM_010158, intron 7 of 8)	intron (NM_010158, intron 7 of 8)	151503.0	NM_010158	13992.0	Mm.17964	NM_010158	ENSMUSG00000022332	Khdrbs3	Etle|SLM-2|Salp|Slm2|T-STAR	KH domain containing, RNA binding, signal transduction associated 3	protein-coding	0.5	13.5	1.0	0.0	18.5	4.5
Merged-chr14-60290193-2	chr14	60289697	60290697	+	653.0	f0_balb.idr|f0_c57.idr	intron (NM_144843, intron 6 of 13)	intron (NM_144843, intron 6 of 13)	24992.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	20.5	39.0	37.0	18.5	50.0	42.5
Merged-chr5-110023915-2	chr5	110023415	110024415	+	653.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR46B|LTR|ERVK	27388.0	NM_145563	69504.0	Mm.441438	NM_145563	ENSMUSG00000066613	Zfp932	2310001H12Rik|Znf431	zinc finger protein 932	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-57533396-2	chr3	57532896	57533896	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133784, intron 2 of 6)	RMER19B|LTR|ERVK	42480.0	NM_133784	97064.0	Mm.405029	NM_133784	ENSMUSG00000027803	Wwtr1	2310058J06Rik|2610021I22Rik|C78399|Taz	WW domain containing transcription regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166077194-2	chr2	166076693	166077693	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252579, intron 18 of 20)	intron (NM_001252579, intron 18 of 20)	78092.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	5.0	0.0	0.5	0.0	0.0	2.0
Merged-chr9-119971153-1	chr9	119970653	119971653	+	653.0	f1_c57bl6.idr	TTS (NM_153287)	TTS (NM_153287)	11870.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.0	1.5	0.0	0.0	1.5	1.5
Merged-chr14-70659119-1	chr14	70658619	70659619	+	653.0	f1_c57bl6.idr	Intergenic	Intergenic	-6035.0	NM_181345	328440.0	Mm.347749	NM_181345	ENSMUSG00000047911	Npm2	-	nucleophosmin/nucleoplasmin 2	protein-coding	0.0	1.0	3.0	2.0	0.0	2.0
Merged-chr5-115342383-2	chr5	115341883	115342883	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026933, intron 1 of 1)	intron (NM_026933, intron 1 of 1)	1136.0	NM_026933	69076.0	Mm.27951	NM_026933	ENSMUSG00000029535	Triap1	1810015M01Rik|AU020874|AU043831|P53csv|Wf-1	TP53 regulated inhibitor of apoptosis 1	protein-coding	8.0	21.0	29.0	8.0	18.5	30.5
Merged-chr7-126765984-3	chr7	126765480	126766480	+	653.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024228)	promoter-TSS (NM_024228)	-434.0	NM_024228	68616.0	Mm.246881	NM_024228	ENSMUSG00000030703	Gdpd3	1110015E22Rik	glycerophosphodiester phosphodiesterase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35663263-1	chr8	35662763	35663763	+	653.0	f1_balb.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-74243.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	7.0	7.5	7.5	1.5	0.0	1.0
Merged-chr4-98468392-2	chr4	98467892	98468892	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005784, intron 16 of 19)	intron (NM_001005784, intron 16 of 19)	57365.0	NM_001355177	12695.0	Mm.90218	NM_007704	ENSMUSG00000061859	Patj	Cipp|Inadl	PATJ, crumbs cell polarity complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61679085-2	chr10	61678585	61679585	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_126477, intron 1 of 1)	MT2A|LTR|ERVL	-1200.0	NM_001358488	20224.0	Mm.391794	NM_009120	ENSMUSG00000020088	Sar1a	1600019H17Rik|Sara|Sara1	secretion associated Ras related GTPase 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-22786936-1	chr4	22786436	22787436	+	653.0	f1_balb.idr	Intergenic	L1_Mus3|LINE|L1	296388.0	NR_131335	105500046.0		NR_131335	ENSMUSG00000107859	Gm30731	Pnky|lnc-pou3f2	predicted gene, 30731	ncRNA	0.0	1.0	0.5	0.0	2.0	0.0
Merged-chr7-81234369-1	chr7	81233869	81234869	+	653.0	f0_balb.idr	intron (NM_008803, intron 1 of 21)	intron (NM_008803, intron 1 of 21)	20565.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5711215-2	chr13	5710715	5711715	+	653.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146877.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84795827-2	chr2	84795327	84796327	+	653.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17D2|LTR|ERVK	-3001.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr11-70701925-2	chr11	70701425	70702425	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153103, intron 1 of 22)	intron (NM_153103, intron 1 of 22)	1377.0	NM_153103	16562.0	Mm.99996	NM_153103	ENSMUSG00000020821	Kif1c	B430105J22Rik|D11Bwg1349e|Ltxs1|Orch3	kinesin family member 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132337099-2	chr1	132336599	132337599	+	653.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	20974.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19369203-1	chr3	19368703	19369703	+	653.0	f0_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-57881.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	1.0	0.0	0.0	0.0	0.0	0.5
Merged-chr11-37178178-2	chr11	37177678	37178678	+	653.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-233937.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.0	2.5	7.0	5.5	0.0	0.0
Merged-chr1-138172889-2	chr1	138172389	138173389	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	2237.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97205637-2	chr7	97205137	97206137	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	Lx3_Mus|LINE|L1	120327.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0.0	0.0	2.0	1.5	3.5	0.5
Merged-chr12-79023093-1	chr12	79022593	79023593	+	653.0	f1_c57bl6.idr	Intergenic	Intergenic	-6070.0	NM_181073	211945.0	Mm.478321	NM_181073	ENSMUSG00000060716	Plekhh1	AV308913|C77772|D630024D12Rik|mKIAA1200	pleckstrin homology domain containing, family H (with MyTH4 domain) member 1	protein-coding	13.0	14.5	6.5	0.0	5.5	3.5
Merged-chr12-4430705-2	chr12	4430205	4431205	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010881, intron 1 of 22)	MLT1J|LTR|ERVL-MaLR	46477.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46867008-1	chr18	46866508	46867508	+	653.0	f0_balb.idr	intron (NM_029008, intron 3 of 19)	intron (NM_029008, intron 3 of 19)	16969.0	NM_029008	74574.0	Mm.26379	NM_029008	ENSMUSG00000024481	Lvrn	4833403I15Rik|APQ|Aqpep	laeverin	protein-coding	0.0	0.5	2.5	0.0	0.5	2.0
Merged-chr2-167746997-2	chr2	167746497	167747497	+	653.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55820.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136073902-2	chr5	136073402	136074402	+	653.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10014.0	NM_133914	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147186208-2	chr5	147185708	147186708	+	652.916687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2488.0	NM_008178	14842.0	Mm.4797	NM_008178	ENSMUSG00000053129	Gsx1	Gsh-1|Gsh1	GS homeobox 1	protein-coding	2.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16129687-2	chr7	16129154	16130154	+	652.900024	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_148946)	promoter-TSS (NM_148946)	-172.0	NM_001347561	110891.0	Mm.241147	NM_148946	ENSMUSG00000030376	Slc8a2	Ncx2	solute carrier family 8 (sodium/calcium exchanger), member 2	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr10-80275099-2	chr10	80274599	80275599	+	652.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133188, intron 4 of 11)	intron (NM_133188, intron 4 of 11)	-3065.0	NR_105876	102466207.0		NR_105876	ENSMUSG00000098672	Mir6911	Gm27822|mmu-mir-6911	microRNA 6911	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32610962-2	chr2	32610462	32611462	+	652.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025310, intron 2 of 5)	intron (NM_001025310, intron 2 of 5)	3977.0	NR_110347	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-15972277-2	chr7	15971777	15972777	+	652.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081418, exon 14 of 14)	exon (NM_001081418, exon 14 of 14)	-4742.0	NM_153068	259300.0	Mm.138215	NM_153068	ENSMUSG00000074364	Ehd2	BC027084|C130052H20Rik	EH-domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-65413809-2	chr2	65413309	65414309	+	652.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49409.0	NR_105755	102466151.0		NR_105755	ENSMUSG00000099184	Mir6337	Gm27877|mmu-mir-6337	microRNA 6337	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32615609-2	chr11	32615109	32616109	+	652.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 16 of 18)	intron (NM_009288, intron 16 of 18)	-26946.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	1.0	0.0	1.0	0.0	0.0	1.5
Merged-chr19-3943044-2	chr19	3942544	3943544	+	652.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019449, intron 7 of 10)	intron (NM_019449, intron 7 of 10)	7858.0	NM_001161428	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-108519026-4	chr4	108518530	108519530	+	652.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175472, intron 15 of 30)	ORR1F|LTR|ERVL-MaLR	59604.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101454775-3	chr7	101454275	101455275	+	652.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008548, intron 2 of 30)	intron (NM_001008548, intron 2 of 30)	-1287.0	NR_152194	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	0.0	0.0	4.5	0.0	1.0	0.5
Merged-chr4-155152950-3	chr4	155152426	155153426	+	652.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66322.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97455311-2	chr6	97454811	97455811	+	652.8000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	3975.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73472387-2	chr13	73471887	73472887	+	652.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_145376, intron 1 of 13)	intron (NM_145376, intron 1 of 13)	5004.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84236476-2	chr15	84235976	84236976	+	652.6999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	intron (NM_133167, intron 1 of 12)	4433.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-12772690-3	chr16	12772202	12773202	+	652.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38688.0	NR_040507	75493.0	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11005413-3	chr8	11004881	11005881	+	652.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081212, exon 1 of 2)	exon (NM_001081212, exon 1 of 2)	-2469.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-67811373-1	chr14	67810873	67811873	+	652.666687	f0_c57.idr	intron (NM_177780, intron 21 of 51)	intron (NM_177780, intron 21 of 51)	48372.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	1.5	6.0	1.0	1.0	1.5	0.5
Merged-chr9-21807174-2	chr9	21806674	21807674	+	652.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_177030, intron 41 of 49)	RSINE1|SINE|B4	2826.0	NR_106051	102465657.0		NR_106051	ENSMUSG00000098473	Mir7083	Gm27888|mmu-mir-7083	microRNA 7083	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94486098-3	chr8	94485601	94486601	+	652.622192	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033207, intron 11 of 48)	L2a|LINE|L2	13338.0	NM_001033207	434341.0	Mm.334720	NM_001033207	ENSMUSG00000074151	Nlrc5	AI451557|AK220210|NOD27	NLR family, CARD domain containing 5	protein-coding	14.0	28.5	7.0	2.5	5.5	6.5
Merged-chr11-77455195-2	chr11	77454739	77455739	+	652.56665	f1_balb.idr|f1_c57bl6.idr	exon (NM_001291190, exon 14 of 14)	exon (NM_001291190, exon 14 of 14)	-8674.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92605503-3	chr5	92605059	92606059	+	652.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175096, exon 2 of 2)	exon (NM_175096, exon 2 of 2)	2508.0	NM_175096	52331.0	Mm.21965	NM_175096	ENSMUSG00000047963	Stbd1	D530019K15Rik|D5Ertd593e	starch binding domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-48163228-3	chr9	48162732	48163732	+	652.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	177666.0	NM_030069	78252.0	Mm.31626	NM_030069	ENSMUSG00000032028	Nxpe2	4432416J03Rik|AI323362|Fam55b	neurexophilin and PC-esterase domain family, member 2	protein-coding	0.0	19.5	10.0	1.5	6.5	2.0
Merged-chr4-136136271-2	chr4	136135771	136136771	+	652.549988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7551.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0.0	2.5	6.5	3.0	8.5	5.5
Merged-chr17-4909267-2	chr17	4908767	4909767	+	652.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85807.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102436173-2	chr11	102435676	102436676	+	652.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_199200)	TTS (NM_199200)	5854.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	1.0	4.0	0.5	0.5	2.0	2.0
Merged-chr1-74678012-2	chr1	74677512	74678512	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001014974, intron 2 of 19)	intron (NM_001014974, intron 2 of 19)	16258.0	NM_001014974	67534.0	Mm.260714	NM_001014974	ENSMUSG00000033257	Ttll4	4632407P03Rik|AI451681|mKIAA0173	tubulin tyrosine ligase-like family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19007505-2	chr7	19007005	19008005	+	652.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178757)	TTS (NM_178757)	3440.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	0.0	0.0	0.0	0.0	3.5	6.5
Merged-chr2-181189577-2	chr2	181189077	181190077	+	652.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2330.0	NM_001356427	66496.0	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120821177-2	chr6	120820677	120821677	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007510, intron 1 of 8)	intron (NM_007510, intron 1 of 8)	1521.0	NM_007510	11973.0	Mm.29045	NM_007510	ENSMUSG00000019210	Atp6v1e1	2410029D23Rik|Atp6e|Atp6e2|Atp6v1e|D6Ertd385e|Vma4|p31	ATPase, H+ transporting, lysosomal V1 subunit E1	protein-coding	3.5	39.5	14.5	5.5	16.5	7.5
Merged-chr1-86021760-2	chr1	86021235	86022235	+	652.5	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001122732)	promoter-TSS (NM_001122732)	-207.0	NM_001122732	70060.0	Mm.196313	NM_027029	ENSMUSG00000026226	Spata3	1700011N12Rik|1700029H01Rik|4930424D10Rik|Mtsarg1|Tsarg1	spermatogenesis associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67257603-2	chr5	67257088	67258088	+	652.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2977.0	NM_001285452	67878.0	Mm.23217	NM_028975	ENSMUSG00000037720	Tmem33	1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83	transmembrane protein 33	protein-coding	3.0	4.5	5.0	2.0	8.5	1.0
Merged-chr12-35331453-2	chr12	35330953	35331953	+	652.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-136556.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	3.5	1.0	3.0	1.5	10.0	2.5
Merged-chr15-53115560-2	chr15	53115060	53116060	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	230623.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39558631-2	chr18	39558131	39559131	+	652.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71386.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54968989-2	chr18	54968489	54969489	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	21191.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-22714675-2	chr10	22714175	22715175	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011603, intron 1 of 6)	intron (NM_011603, intron 1 of 6)	14757.0	NR_106123	102465768.0		NR_106123	ENSMUSG00000098714	Mir7663	Gm28034|mmu-mir-7663	microRNA 7663	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108053656-2	chr9	108053156	108054156	+	652.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_177275, exon 1 of 1)	exon (NM_177275, exon 1 of 1)	497.0	NM_177275	320844.0	Mm.449806	NM_177275	ENSMUSG00000032593	Amigo3	E430002N15Rik|ali3|mKIAA1851	adhesion molecule with Ig like domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-64490707-2	chr18	64490207	64491207	+	652.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1609.0	NM_001348055	14151.0	Mm.1070	NM_007998	ENSMUSG00000024588	Fech	AI894116|Fcl|fch	ferrochelatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-55550964-4	chr15	55550497	55551497	+	652.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026759, intron 2 of 6)	intron (NM_026759, intron 2 of 6)	6315.0	NM_026759	68537.0	Mm.236795	NM_026759	ENSMUSG00000022370	Mrpl13	1110002D09Rik	mitochondrial ribosomal protein L13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21786068-2	chr13	21785568	21786568	+	652.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178184)	TTS (NM_178184)	1150.0	NM_178184	319170.0		NM_178184	ENSMUSG00000069309	Hist1h2an	-	histone cluster 1, H2an	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-158925654-2	chr3	158925154	158926154	+	652.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-150710.0	NR_040750	624759.0	Mm.491054	NR_040750	ENSMUSG00000106053	Gm20752	-	predicted gene, 20752	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136672798-2	chr1	136672298	136673298	+	652.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10598.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181493814-2	chr2	181493314	181494314	+	652.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_183181, exon 1 of 1)	exon (NM_183181, exon 1 of 1)	608.0	NM_183181	241850.0	Mm.87455	NM_183181	ENSMUSG00000055882	Abhd16b	1700095H12	abhydrolase domain containing 16B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73028587-2	chr2	73028087	73029087	+	652.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY3_LTR|LTR|ERVK	-48141.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-18933413-2	chr8	18932913	18933913	+	652.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001286469, exon 7 of 7)	3' UTR (NM_001286469, exon 7 of 7)	17458.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-89581753-2	chr1	89581253	89582253	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	CpG	102139.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57454057-2	chr16	57453557	57454557	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-95185.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88335741-2	chr10	88335241	88336241	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 4 of 6)	ORR1D1|LTR|ERVL-MaLR	21334.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	4.5	40.0	22.5	4.5	40.5	25.0
Merged-chr15-61991321-2	chr15	61990821	61991821	+	652.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010849)	TTS (NM_010849)	5980.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40158378-2	chr4	40157878	40158878	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007386, intron 1 of 20)	intron (NM_007386, intron 1 of 20)	15113.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122981077-2	chr14	122980577	122981577	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360598, intron 1 of 18)	intron (NM_001360598, intron 1 of 18)	2065.0	NM_001360599	70551.0	Mm.271988	NM_028651	ENSMUSG00000041594	Tmtc4	4930403J22Rik|5730419O14Rik	transmembrane and tetratricopeptide repeat containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131935959-2	chr2	131935459	131936459	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001278256, intron 3 of 3)	intron (NM_001278256, intron 3 of 3)	-14902.0	NM_001278257	26434.0	Mm.180750	NM_023043	ENSMUSG00000027338	Prnd	AI450264|Dpl|PrPLP|doppel	prion like protein doppel	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61694502-2	chr10	61694002	61695002	+	652.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1012.0	NM_001272090	71767.0	Mm.71514	NM_027912	ENSMUSG00000020087	Tysnd1	1300019N10Rik	trypsin domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49032269-2	chr7	49031769	49032769	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	73196.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34289903-2	chr17	34289392	34290392	+	652.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2121.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	0.0	22.0	5.0	16.0	17.0	8.0
Merged-chr16-17693618-2	chr16	17693118	17694118	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358404, intron 2 of 16)	intron (NM_001358404, intron 2 of 16)	29282.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121403412-2	chr10	121402912	121403912	+	652.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38322.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	1.5	3.5	2.5	2.5	1.0	1.5
Merged-chr15-95794439-2	chr15	95793936	95794936	+	652.5	f0_balb.idr|f0_c57.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	3593.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98806329-2	chr15	98805829	98806829	+	652.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001013741, exon 2 of 2)	exon (NM_001013741, exon 2 of 2)	1596.0	NM_001013741	13199.0	Mm.390810	NM_001013741	ENSMUSG00000059213	Ddn	Gm748	dendrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-171090294-2	chr2	171089794	171090794	+	652.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	358487.0	NM_001163686	76829.0	Mm.41633	NM_029761	ENSMUSG00000027560	Dok5	2700055C10Rik	docking protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27051127-2	chr17	27050627	27051627	+	652.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6177.0	NM_080553	16440.0	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-26824101-2	chr10	26823601	26824601	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	51589.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31570021-2	chr14	31569521	31570521	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009937, intron 1 of 16)	intron (NM_009937, intron 1 of 16)	7362.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81477782-2	chr10	81477282	81478282	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176954, intron 1 of 11)	intron (NM_176954, intron 1 of 11)	-2938.0	NM_001311126	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119098418-1	chr8	119097918	119098918	+	652.5	f0_balb.idr	intron (NM_019707, intron 7 of 13)	intron (NM_019707, intron 7 of 13)	-246120.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131661857-2	chr1	131661357	131662357	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007799, intron 1 of 9)	intron (NM_007799, intron 1 of 9)	23543.0	NM_007799	13034.0	Mm.230249	NM_007799	ENSMUSG00000004552	Ctse	A430072O03Rik|C920004C08Rik|CE|CatE	cathepsin E	protein-coding	0.0	1.5	0.5	0.0	1.0	3.5
Merged-chr3-88168365-2	chr3	88167865	88168865	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310593, intron 10 of 10)	intron (NM_001310593, intron 10 of 10)	9420.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25091566-2	chr12	25091052	25092052	+	652.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	4540.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	20.0	1.5	2.0	0.0	6.5	3.0
Merged-chr10-118805685-2	chr10	118805185	118806185	+	652.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	63218.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99049674-2	chr15	99049174	99050174	+	652.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5500.0	NM_001163588	19132.0	Mm.2477	NM_013639	ENSMUSG00000023484	Prph	Prph1	peripherin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27446208-2	chr3	27445708	27446708	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 23 of 26)	intron (NM_001356953, intron 23 of 26)	74857.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88442937-2	chr10	88442437	88443437	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004164, intron 19 of 20)	RLTR12B|LTR|ERVK	-16650.0	NM_011517	20962.0	Mm.297977	NM_011517	ENSMUSG00000020059	Sycp3	Cor1|Scp3	synaptonemal complex protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152134687-3	chr4	152134177	152135177	+	652.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207689, intron 2 of 9)	intron (NM_207689, intron 2 of 9)	1648.0	NM_207689	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24728033-2	chr17	24727445	24728445	+	652.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163945, intron 1 of 9)	intron (NM_001163945, intron 1 of 9)	116.0	NM_001163945	66211.0	Mm.46198	NM_025425	ENSMUSG00000002500	Rpl3l	1110057H16Rik	ribosomal protein L3-like	protein-coding	0.0	2.5	4.5	9.0	1.0	1.0
Merged-chr10-81302446-2	chr10	81301946	81302946	+	652.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	9483.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11132994-2	chr16	11132494	11133494	+	652.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029582, intron 1 of 11)	intron (NM_029582, intron 1 of 11)	1538.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-17284286-2	chr11	17283786	17284786	+	652.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26598.0	NM_001330649	57316.0	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-94425943-3	chr3	94425448	94426448	+	652.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001357713, exon 6 of 6)	exon (NM_001357713, exon 6 of 6)	10703.0	NM_016901	53814.0	Mm.440422	NM_016901	ENSMUSG00000028141	Oaz3	AZ3|Az-3|Oaz-t	ornithine decarboxylase antizyme 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73509272-3	chr14	73508789	73509789	+	652.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026119)	promoter-TSS (NM_026119)	-760.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-11966494-3	chr15	11965991	11966991	+	652.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040447)	promoter-TSS (NR_040447)	-571.0	NR_040447	73339.0	Mm.231975	NR_040447	ENSMUSG00000099349	1700047G03Rik	-	RIKEN cDNA 1700047G03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28468081-2	chr17	28467581	28468581	+	652.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 1 of 10)	intron (NM_010220, intron 1 of 10)	18068.0	NM_010220	14229.0	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-88478579-3	chr16	88478097	88479097	+	652.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28381.0	NM_181490	239931.0	Mm.126860	NM_181490	ENSMUSG00000055811	Cldn17	-	claudin 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-141093762-2	chr5	141093262	141094262	+	652.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93166.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124888154-3	chr6	124887681	124888681	+	652.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013488)	promoter-TSS (NM_013488)	19.0	NM_013488	12504.0	Mm.2209	NM_013488	ENSMUSG00000023274	Cd4	L3T4|Ly-4	CD4 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122893717-3	chr8	122893331	122894331	+	652.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037865, exon 10 of 14)	non-coding (NR_037865, exon 10 of 14)	45457.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	13.5	0.0	0.5	0.0	7.5	0.0
Merged-chr9-45313485-4	chr9	45312969	45313969	+	652.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5631.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	3.0	10.5	0.0	6.5	0.0	1.0
Merged-chr17-5403421-2	chr17	5402921	5403921	+	652.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15346.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35397836-2	chr7	35397336	35398336	+	652.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_153799, intron 1 of 19)	intron (NR_153799, intron 1 of 19)	773.0	NM_028120	72140.0	Mm.133263	NM_028120	ENSMUSG00000023072	Cep89	2610507L03Rik|Ccdc123	centrosomal protein 89	protein-coding	1.0	0.0	1.5	1.0	5.0	1.0
Merged-chr10-80739794-2	chr10	80739294	80740294	+	652.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007460, intron 1 of 30)	B3|SINE|B2	2481.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19330204-2	chr7	19329704	19330704	+	652.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14867.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180229958-2	chr1	180229458	180230458	+	652.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128605, intron 7 of 10)	intron (NM_001128605, intron 7 of 10)	15992.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115143784-3	chr11	115143259	115144259	+	652.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163753, intron 1 of 8)	B1_Mur4|SINE|Alu	-9767.0	NM_145634	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-16226286-3	chr9	16225811	16226811	+	652.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	151920.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-40083339-2	chr1	40082839	40083839	+	652.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_037980, intron 3 of 3)	intron (NR_037980, intron 3 of 3)	-1375.0	NM_010555	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52025610-2	chr13	52025110	52026110	+	652.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71131.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30438399-2	chr7	30437894	30438894	+	652.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007467, intron 10 of 16)	intron (NM_007467, intron 10 of 16)	7188.0	NM_007467	11803.0	Mm.2381	NM_007467	ENSMUSG00000006651	Aplp1	-	amyloid beta (A4) precursor-like protein 1	protein-coding	4.5	4.0	2.0	0.0	4.0	0.0
Merged-chr13-54758168-4	chr13	54757666	54758666	+	652.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_033610)	TTS (NM_033610)	-8292.0	NM_012014	26913.0	Mm.41812	NM_012014	ENSMUSG00000069227	Gprin1	GRIN1|Z16	G protein-regulated inducer of neurite outgrowth 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155070031-3	chr1	155069527	155070527	+	652.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151545, intron 3 of 6)	intron (NR_151545, intron 3 of 6)	13237.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108858355-2	chr3	108857855	108858855	+	652.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001165965, intron 10 of 11)	intron (NM_001165965, intron 10 of 11)	-17853.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	0.0	0.0	5.5	2.0	0.5	2.0
Merged-chr3-96301810-2	chr3	96301302	96302302	+	652.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7833.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	112.5	291.5	205.5	108.0	289.5	191.0
Merged-chr2-120569816-2	chr2	120569316	120570316	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009222, intron 1 of 7)	B1_Mus1|SINE|Alu	2145.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	3.0	0.5	6.0	2.0	1.0	5.5
Merged-chr2-97394013-1	chr2	97393513	97394513	+	652.0	f1_c57bl6.idr	intron (NM_001289742, intron 5 of 7)	L1_Mus4|LINE|L1	-73644.0	NM_001289744	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	1.5	0.0	0.0	1.5	0.0	0.0
Merged-chr15-99003126-2	chr15	99002626	99003626	+	652.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	17161.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-39276634-2	chr4	39276139	39277139	+	652.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-173654.0	NM_001081095	75471.0	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding	8.0	10.5	1.0	2.0	1.0	0.0
Merged-chr10-60082594-1	chr10	60082094	60083094	+	652.0	f0_balb.idr	intron (NM_026937, intron 9 of 10)	ORR1F|LTR|ERVL-MaLR	-23663.0	NM_052994	94214.0	Mm.153429	NM_052994	ENSMUSG00000058297	Spock2	AA407235|Gcap26|mKIAA0275	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106567669-3	chr1	106567174	106568174	+	652.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	-21043.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-24575743-1	chr4	24575243	24576243	+	652.0	f0_balb.idr	intron (NR_149739, intron 14 of 24)	L2|LINE|L2	79292.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112255462-2	chr5	112254962	112255962	+	652.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023695)	promoter-TSS (NM_023695)	-358.0	NM_001312895	12960.0	Mm.29488	NM_023695	ENSMUSG00000029343	Crybb1	3110006K12Rik|BB1CRY	crystallin, beta B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121228040-2	chr11	121227540	121228540	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252548, intron 2 of 6)	intron (NM_001252548, intron 2 of 6)	900.0	NM_001254735	217370.0	Mm.27182	NM_144832	ENSMUSG00000039294	BC017643	-	cDNA sequence BC017643	protein-coding	3.0	5.0	3.0	0.0	2.0	1.5
Merged-chr6-108441560-1	chr6	108441060	108442060	+	652.0	f1_balb.idr	intron (NM_010585, intron 44 of 61)	B3|SINE|B2	-48183.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	3.0	1.0	0.0	0.0	0.0	6.0
Merged-chr11-115515551-2	chr11	115515051	115516051	+	652.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1158.0	NM_008258	15374.0	Mm.1775	NM_008258	ENSMUSG00000020737	Jpt1	Hn1	Jupiter microtubule associated homolog 1	protein-coding	9.0	0.5	3.5	7.5	4.0	2.5
Merged-chr12-40815527-2	chr12	40815027	40816027	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 39 of 52)	L1MB5|LINE|L1	-208563.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45683918-1	chr14	45683418	45684418	+	652.0	f1_c57bl6.idr	Intergenic	Intergenic	-25775.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	0.0	4.5	2.5	14.0	2.5	1.5
Merged-chr7-27655200-2	chr7	27654700	27655700	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028417, intron 2 of 2)	intron (NM_028417, intron 2 of 2)	1276.0	NM_028417	73032.0	Mm.44095	NM_028417	ENSMUSG00000007944	Ttc9b	2900074C18Rik	tetratricopeptide repeat domain 9B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30252846-1	chr7	30252346	30253346	+	652.0	f1_c57bl6.idr	intron (NR_152437, intron 15 of 32)	intron (NR_152437, intron 15 of 32)	-16081.0	NM_001289817	381867.0	Mm.483986	NM_001289817	ENSMUSG00000100512	Ovol3	Gm1903|movo3	ovo like zinc finger 3	protein-coding	2.5	0.0	0.0	2.5	3.5	1.0
Merged-chr19-9979561-2	chr19	9979061	9980061	+	652.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1039.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86749533-1	chr4	86749033	86750033	+	652.0	f1_c57bl6.idr	intron (NM_184088, intron 1 of 31)	intron (NM_184088, intron 1 of 31)	978.0	NM_184088	329877.0	Mm.273718	NM_184088	ENSMUSG00000038024	Dennd4c	1700065A05Rik|AA420392	DENN/MADD domain containing 4C	protein-coding	4.5	5.0	17.5	3.0	17.0	7.5
Merged-chr19-5528163-1	chr19	5527663	5528663	+	652.0	f1_balb.idr	Intergenic	Intergenic	-17646.0	NM_001024560	225861.0	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	2.0	6.5	4.5	4.0	2.5	3.5
Merged-chr1-138193408-2	chr1	138192908	138193908	+	652.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-18103.0	NM_001268286	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44723421-2	chr16	44722928	44723928	+	652.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145972)	promoter-TSS (NM_145972)	-873.0	NM_145972	212547.0	Mm.310573	NM_145972	ENSMUSG00000036208	Nepro	-	nucleolus and neural progenitor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12900126-1	chr15	12899626	12900626	+	652.0	f1_c57bl6.idr	intron (NM_026799, intron 22 of 34)	intron (NM_026799, intron 22 of 34)	75311.0	NM_001130149	14000.0	Mm.293142	NM_026799	ENSMUSG00000022191	Drosha	1110013A17Rik|AI874853|Etohi2|Rn3|Rnasen	drosha, ribonuclease type III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101506916-1	chr13	101506416	101507416	+	652.0	f1_balb.idr	Intergenic	Intergenic	-109336.0	NR_046187	78136.0	Mm.399065	NR_046187		4922502H24Rik	-	RIKEN cDNA 4922502H24 gene	ncRNA	3.5	17.5	8.5	0.5	1.0	5.0
Merged-chr3-88549990-2	chr3	88549490	88550490	+	652.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_031248, exon 4 of 4)	exon (NM_031248, exon 4 of 4)	-1711.0	NM_016899	53868.0	Mm.26994	NM_016899	ENSMUSG00000008601	Rab25	AV012978	RAB25, member RAS oncogene family	protein-coding	0.0	1.5	2.0	0.0	1.5	2.0
Merged-chr10-96365430-1	chr10	96364930	96365930	+	652.0	f0_balb.idr	Intergenic	Intergenic	139223.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-8410249-1	chr6	8409749	8410749	+	652.0	f0_balb.idr	intron (NM_001302353, intron 4 of 4)	intron (NM_001302353, intron 4 of 4)	98912.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93913570-1	chr16	93913070	93914070	+	652.0	f0_c57.idr	Intergenic	Intergenic	15997.0	NM_001165925	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	44.5	58.5	49.5	0.0	2.0	1.5
Merged-chr16-76314202-2	chr16	76313702	76314702	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358238, intron 3 of 3)	intron (NM_001358238, intron 3 of 3)	58847.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-66695575-2	chr1	66695075	66696075	+	652.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175510, exon 65 of 65)	exon (NM_175510, exon 65 of 65)	-5256.0	NM_025683	66646.0	Mm.240912	NM_025683	ENSMUSG00000026005	Rpe	2810429B02Rik|5730518J08Rik	ribulose-5-phosphate-3-epimerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103024132-2	chr3	103023632	103024632	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310693, intron 1 of 17)	RLTR17B_Mm|LTR|ERVK	3586.0	NM_144901	229663.0	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80417823-1	chr18	80417323	80418323	+	652.0	f1_balb.idr	intron (NM_026295, intron 12 of 12)	intron (NM_026295, intron 12 of 12)	51844.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	0.5	1.0	1.5	4.0	3.0	1.0
Merged-chr7-30218452-1	chr7	30217952	30218952	+	652.0	f1_c57bl6.idr	Intergenic	Intergenic	12939.0	NM_001360648	66411.0	Mm.27947	NM_025548	ENSMUSG00000006095	Tbcb	2410007D12Rik|AU041393|CG22|CKAPI|Ckap1	tubulin folding cofactor B	protein-coding	2.5	13.0	9.5	1.5	0.0	0.0
Merged-chr16-50224535-2	chr16	50224035	50225035	+	652.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347240, exon 12 of 17)	exon (NM_001347240, exon 12 of 17)	-151683.0	NR_045935	224180.0	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121108958-2	chr8	121108458	121109458	+	652.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166482)	promoter-TSS (NM_001166482)	-579.0	NM_001166482	234814.0	Mm.31690	NM_172761	ENSMUSG00000031816	Mthfsd	AW049977|BC052066|C920004D05	methenyltetrahydrofolate synthetase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-76760120-1	chr13	76759620	76760620	+	652.0	f1_balb.idr	intron (NM_030174, intron 8 of 20)	intron (NM_030174, intron 8 of 20)	375159.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	0.0	2.0	4.0	0.0	0.0	1.5
Merged-chr1-191117382-1	chr1	191116882	191117882	+	652.0	f1_c57bl6.idr	Intergenic	Intergenic	18968.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	10.5	17.0	8.0	8.0	32.0	10.0
Merged-chr1-117597733-1	chr1	117597233	117598233	+	652.0	f1_balb.idr	Intergenic	Intergenic	712995.0	NR_153836	22099.0	Mm.426637	NM_011650	ENSMUSG00000026374	Tsn	2610034C24Rik|AU040286|C3PO|TB-RBP	translin	protein-coding	0.0	0.0	1.0	0.0	0.0	2.0
Merged-chr15-73648070-2	chr15	73647570	73648570	+	652.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-23326.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136513791-1	chr6	136513291	136514291	+	652.0	f0_c57.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	-5060.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	14.0	47.0	46.0	3.5	16.0	12.0
Merged-chr2-14232769-2	chr2	14232269	14233269	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 1 of 29)	intron (NM_008625, intron 1 of 29)	3355.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25334112-2	chr2	25333612	25334612	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029983, intron 2 of 12)	B1_Mus1|SINE|Alu	1369.0	NM_001029983	227619.0	Mm.270798	NM_001029983	ENSMUSG00000036646	Man1b1	E430019H13Rik|ERMan1|Gm108|MANA-ER	mannosidase, alpha, class 1B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43671015-1	chr4	43670515	43671515	+	652.0	f1_c57bl6.idr	intron (NM_001355718, intron 1 of 11)	intron (NM_001355718, intron 1 of 11)	2044.0	NM_001355718	242409.0	Mm.171489	NM_001085508	ENSMUSG00000078716	Tmem8b	4930500O05Rik	transmembrane protein 8B	protein-coding	0.0	3.5	0.0	0.0	0.0	0.0
Merged-chr12-40719133-3	chr12	40718648	40719648	+	652.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 16 of 52)	Lx6|LINE|L1	273095.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127178943-2	chr10	127178443	127179443	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177615, intron 2 of 16)	intron (NM_177615, intron 2 of 16)	1702.0	NM_177615	216441.0	Mm.248373	NM_177615	ENSMUSG00000040441	Slc26a10	C78409|D630010I07	solute carrier family 26, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16916744-2	chr7	16916244	16917244	+	652.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007590, exon 6 of 6)	3' UTR (NM_007590, exon 6 of 6)	7288.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81622836-2	chr10	81622336	81623336	+	652.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_181586, exon 7 of 8)	exon (NM_181586, exon 7 of 8)	4486.0	NM_001163430	50721.0	Mm.25643	NM_181586	ENSMUSG00000034748	Sirt6	2810449N18Rik|AI043036|Sir2l6	sirtuin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-75045506-2	chr5	75045006	75046006	+	652.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028850)	promoter-TSS (NM_028850)	-865.0	NM_028850	74277.0	Mm.239814	NM_028850	ENSMUSG00000029229	Chic2	1700081B18Rik|4930502K01Rik|BTL	cysteine-rich hydrophobic domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30997620-2	chr7	30997120	30998120	+	652.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15699.0	NM_001242647	76415.0	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-50448464-2	chr12	50447964	50448964	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008858, intron 2 of 18)	intron (NM_008858, intron 2 of 18)	200759.0	NM_008858	18760.0	Mm.133719	NM_008858	ENSMUSG00000002688	Prkd1	PKD|PKD1|Pkcm|Prkcm	protein kinase D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12832348-1	chr19	12831848	12832848	+	652.0	f1_balb.idr	intron (NM_134152, intron 7 of 8)	intron (NM_134152, intron 7 of 8)	-29429.0	NM_146702	258697.0	Mm.223132	NM_146702	ENSMUSG00000046272	Olfr1444	MOR202-4	olfactory receptor 1444	protein-coding	12.5	25.5	20.0	30.0	35.5	24.5
Merged-chr15-99249977-2	chr15	99249477	99250477	+	652.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_016766, exon 3 of 15)	exon (NM_016766, exon 3 of 15)	-1811.0	NR_045627	73600.0	Mm.475134	NR_045627	ENSMUSG00000100599	1700120C14Rik	-	RIKEN cDNA 1700120C14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136128644-2	chr1	136128144	136129144	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_046169, intron 2 of 2)	intron (NR_046169, intron 2 of 2)	2539.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43088882-2	chr17	43088382	43089382	+	652.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178589, exon 6 of 6)	3' UTR (NM_178589, exon 6 of 6)	69409.0	NR_045155	545207.0	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	5.0	14.5	11.5	19.0	30.0	17.0
Merged-chr13-23717157-2	chr13	23716657	23717657	+	652.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR50B|LTR|ERVK	-6303.0	NM_010424	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86657759-2	chr4	86657281	86658281	+	652.0	f0_balb.idr|f1_balb.idr	intron (NM_007408, intron 7 of 7)	intron (NM_007408, intron 7 of 7)	12278.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	15.0	16.0	25.0	11.0	12.5	13.5
Merged-chr9-44269302-1	chr9	44268802	44269802	+	652.0	f0_c57.idr	promoter-TSS (NM_001163742)	promoter-TSS (NM_001163742)	-703.0	NM_001163742	270151.0	Mm.3957	NM_178420	ENSMUSG00000032109	Nlrx1	BC034204|NOD9	NLR family member X1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152555578-1	chr1	152555078	152556078	+	652.0	f0_balb.idr	intron (NM_016846, intron 5 of 17)	intron (NM_016846, intron 5 of 17)	69639.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-17817752-2	chr2	17817252	17818252	+	652.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86684.0	NM_028757	74103.0	Mm.120298	NM_028757	ENSMUSG00000053702	Nebl	1200007O21Rik|A630080F05Rik|BB140644|D830029A09Rik|Lnebl	nebulette	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31465192-2	chr6	31464692	31465692	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013791, intron 9 of 17)	intron (NM_013791, intron 9 of 17)	66364.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-100687539-1	chr3	100687039	100688039	+	652.0	f1_c57bl6.idr	Intergenic	Intergenic	-2066.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-174432630-2	chr2	174432130	174433130	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022325, intron 3 of 5)	intron (NM_022325, intron 3 of 5)	6409.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166190506-2	chr2	166190006	166191006	+	652.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34823.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130862235-3	chr2	130861739	130862739	+	652.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-22094.0	NM_029432	228602.0	Mm.271990	NM_028367	ENSMUSG00000027309	4930402H24Rik	2810487F15Rik|AI413763|C78926	RIKEN cDNA 4930402H24 gene	protein-coding	0.0	4.0	2.5	1.5	0.0	0.5
Merged-chr17-29092803-2	chr17	29092272	29093272	+	652.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007669)	promoter-TSS (NM_007669)	-997.0	NM_007669	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	0.0	1.5	0.5	2.0	0.0	0.5
Merged-chr5-139819302-2	chr5	139818802	139819802	+	652.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5019.0	NM_001161548	231832.0	Mm.482655	NM_144914	ENSMUSG00000036687	Tmem184a	Sdmg1	transmembrane protein 184a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89831883-2	chr3	89831383	89832383	+	652.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172530, exon 1 of 6)	exon (NM_172530, exon 1 of 6)	513.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84642268-1	chr2	84641768	84642768	+	652.0	f0_balb.idr	intron (NM_007615, intron 1 of 19)	PB1D10|SINE|Alu	7212.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	13.5	33.5	15.5	15.5	25.5	18.0
Merged-chr9-57526372-2	chr9	57525872	57526872	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007747, intron 1 of 4)	intron (NM_007747, intron 1 of 4)	5140.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37499520-1	chr19	37499020	37500020	+	652.0	f0_c57.idr	Intergenic	Lx9|LINE|L1	34266.0	NR_131009	78640.0	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	6.5	11.0	9.5	3.5	0.0	2.0
Merged-chr17-56258895-2	chr17	56258395	56259395	+	652.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010192, exon 1 of 1)	3' UTR (NM_010192, exon 1 of 1)	2102.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120055408-1	chr11	120054908	120055908	+	652.0	f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-8263.0	NM_007377	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	4.0	2.5	2.5	4.5	1.5	0.0
Merged-chr10-122676968-1	chr10	122676468	122677468	+	652.0	f1_balb.idr	Intergenic	B3|SINE|B2	-1794.0	NM_176919	319468.0	Mm.489703	NM_176919	ENSMUSG00000034613	Ppm1h	A430075L18Rik|ARHCL1|C030002B11Rik	protein phosphatase 1H (PP2C domain containing)	protein-coding	3.0	1.5	1.5	3.0	1.0	1.0
Merged-chr2-90476447-2	chr2	90475947	90476947	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	2727.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	10.0	8.5	5.0	0.5	1.0	2.5
Merged-chr8-105394644-2	chr8	105394144	105395144	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301173, intron 4 of 15)	intron (NM_001301173, intron 4 of 15)	18858.0	NM_177791	279499.0	Mm.67628	NM_177791	ENSMUSG00000051648	Kctd19	4922504H04Rik	potassium channel tetramerisation domain containing 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180844979-2	chr1	180844479	180845479	+	652.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-6172.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100277051-3	chr12	100276562	100277562	+	652.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045741, intron 1 of 3)	intron (NR_045741, intron 1 of 3)	453.0	NR_045741	100038713.0	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64403344-1	chr7	64402844	64403844	+	652.0	f1_balb.idr	intron (NM_028626, intron 2 of 2)	intron (NM_028626, intron 2 of 2)	10722.0	NM_001355124	73724.0	Mm.10093	NM_028626	ENSMUSG00000033429	Mcee	1110007A04Rik	methylmalonyl CoA epimerase	protein-coding	6.0	0.0	3.0	1.5	2.0	0.5
Merged-chr13-76759345-2	chr13	76758851	76759851	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030174, intron 7 of 20)	intron (NM_030174, intron 7 of 20)	374390.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	0.5	9.0	10.5	2.0	6.0	3.5
Merged-chr5-97126182-1	chr5	97125682	97126682	+	652.0	f0_balb.idr	Intergenic	Intergenic	-14586.0	NM_001359913	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53143158-2	chr15	53142658	53143658	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	203025.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80159025-3	chr11	80158478	80159478	+	652.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 3 of 10)	intron (NM_172133, intron 3 of 10)	4816.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21077982-1	chr19	21077482	21078482	+	652.0	f0_balb.idr	Intergenic	Intergenic	-26728.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	1.0	0.0	0.0	3.5	2.0	2.0
Merged-chr9-63125363-2	chr9	63124863	63125863	+	652.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21617.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118645057-1	chr9	118644557	118645557	+	652.0	f0_balb.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	38348.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86627830-2	chr11	86627330	86628330	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 7 of 11)	B2_Mm2|SINE|B2	43445.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107205335-2	chr11	107204835	107205835	+	652.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-15954.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88487380-2	chr3	88486880	88487880	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002011, intron 2 of 11)	intron (NM_001002011, intron 2 of 11)	5932.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122435627-2	chr8	122435127	122436127	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028354, intron 9 of 10)	B3|SINE|B2	-2687.0	NM_007806	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-194256079-2	chr1	194255579	194256579	+	652.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33320.0	NR_040477	74942.0	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-80939533-2	chr13	80939033	80940033	+	652.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_103550)	promoter-TSS (NR_103550)	-870.0	NR_103550	71416.0	Mm.415500	NR_103550		5430425K12Rik	-	RIKEN cDNA 5430425K12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35239790-2	chr17	35239290	35240290	+	652.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-1956.0	NM_019693	53817.0	Mm.439827	NM_019693	ENSMUSG00000019432	Ddx39b	0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	protein-coding	2.5	14.0	6.5	5.0	7.5	6.0
Merged-chr11-106502776-2	chr11	106502276	106503276	+	652.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_198292, exon 12 of 12)	3' UTR (NM_198292, exon 12 of 12)	1785.0	NR_030703	100216537.0		NR_030703	ENSMUSG00000065126	Snord104	-	small nucleolar RNA, C/D box 104	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-78205454-2	chr16	78204954	78205954	+	652.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50000.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35265789-1	chr17	35265289	35266289	+	652.0	f0_balb.idr	exon (NM_010380, exon 4 of 8)	exon (NM_010380, exon 4 of 8)	2666.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	3.0	1.0	1.5	0.0	4.0	2.5
Merged-chr19-53365118-2	chr19	53364618	53365618	+	651.93335	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008543, intron 3 of 5)	intron (NM_001008543, intron 3 of 5)	24923.0	NM_001356986	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142343945-2	chr3	142343445	142344445	+	651.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190857, intron 2 of 7)	intron (NM_001190857, intron 2 of 7)	47905.0	NM_022554	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	6.5	17.0	2.0	9.0	13.5	4.5
Merged-chr15-56696166-3	chr15	56695676	56696676	+	651.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1630.0	NM_008216	15117.0	Mm.5148	NM_008216	ENSMUSG00000022367	Has2	-	hyaluronan synthase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99602460-4	chr10	99601936	99602936	+	651.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6735.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75667218-3	chr7	75666713	75667713	+	651.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 10 of 36)	intron (NM_029332, intron 10 of 36)	-181125.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-3359092-2	chr13	3358592	3359592	+	651.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-119211.0	NR_015522	76937.0	Mm.487240	NR_015522	ENSMUSG00000097709	2810429I04Rik	AI256682	RIKEN cDNA 2810429I04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25713910-2	chr15	25713410	25714410	+	651.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 3 of 40)	CpG	-39296.0	NM_001353142	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184727558-2	chr1	184727058	184728058	+	651.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_008250, exon 4 of 4)	exon (NM_008250, exon 4 of 4)	4935.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98807343-2	chr11	98806843	98807843	+	651.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001361931, exon 8 of 8)	3' UTR (NM_001361931, exon 8 of 8)	-2465.0	NM_138660	192160.0	Mm.40120	NM_138660	ENSMUSG00000078676	Casc3	Btz|Mln51	cancer susceptibility candidate 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-3972417-3	chr10	3971905	3972905	+	651.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172308)	promoter-TSS (NM_172308)	-670.0	NM_001170786	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38917783-2	chr6	38917283	38918283	+	651.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1203.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132338159-4	chr1	132337652	132338652	+	651.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22027.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34647837-3	chr13	34647349	34648349	+	651.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025831, intron 1 of 4)	intron (NM_025831, intron 1 of 4)	4832.0	NM_025831	66895.0	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18840164-3	chr2	18839675	18840675	+	651.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5A|LINE|L1	-38357.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60701970-2	chr11	60701424	60702424	+	651.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008502, intron 1 of 20)	intron (NM_008502, intron 1 of 20)	2234.0	NM_008502	16897.0	Mm.285453	NM_008502	ENSMUSG00000020536	Llgl1	AI325176|Lgl1|Llglh|Mgl1	LLGL1 scribble cell polarity complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120510074-2	chr5	120509574	120510574	+	651.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-1118.0	NM_001177595	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12263132-2	chr13	12262632	12263632	+	651.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5019.0	NM_001081128	238505.0	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82004326-2	chr11	82003826	82004826	+	651.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31251.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117613249-3	chr8	117612757	117613757	+	651.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 28 of 32)	intron (NM_172285, intron 28 of 32)	58290.0	NM_028725	74032.0	Mm.296302	NM_028725	ENSMUSG00000034308	Sdr42e1	4632417N05Rik|AI117603	short chain dehydrogenase/reductase family 42E, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-73760182-2	chr16	73759682	73760682	+	651.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	581885.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23889778-3	chr13	23889278	23890278	+	651.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_121611, intron 11 of 12)	intron (NR_121611, intron 11 of 12)	19505.0	NM_001170638	20504.0	Mm.2656	NM_009198	ENSMUSG00000021335	Slc17a1	NAPI-1|Napi1|Npt1	solute carrier family 17 (sodium phosphate), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84230810-1	chr15	84230310	84231310	+	651.666687	f1_balb.idr	Intergenic	Intergenic	-1233.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	0.5	3.5	1.0	1.5	8.0	4.5
Merged-chr10-19128035-3	chr10	19127521	19128521	+	651.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13728.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.5	0.0	0.0	0.0	0.0	1.5
Merged-chr11-85520385-2	chr11	85519885	85520885	+	651.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 16 of 25)	intron (NM_138681, intron 16 of 25)	167221.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128370572-2	chr2	128370072	128371072	+	651.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_028590, intron 1 of 2)	intron (NR_028590, intron 1 of 2)	58779.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	3.5	5.5	8.0	2.5	3.5	9.5
Merged-chr2-22936484-2	chr2	22935984	22936984	+	651.625	f1_balb.idr|f1_c57bl6.idr	intron (NR_149721, intron 10 of 10)	RSINE1|SINE|B4	40962.0	NM_001355467	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23820809-2	chr17	23820309	23821309	+	651.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_175229, exon 10 of 14)	exon (NM_175229, exon 10 of 14)	-2482.0	NR_039586	100628593.0		NR_039586	ENSMUSG00000092981	Mir5125	mmu-mir-5125|mu-mir-5125	microRNA 5125	ncRNA	0.0	1.5	2.5	0.0	2.0	0.5
Merged-chr8-70783367-2	chr8	70782860	70783860	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199308, intron 19 of 25)	intron (NM_199308, intron 19 of 25)	6498.0	NR_029440	72093.0	Mm.271208	NR_029440		2010320M18Rik	-	RIKEN cDNA 2010320M18 gene	ncRNA	5.5	10.0	4.5	7.5	1.0	4.0
Merged-chr8-111210140-2	chr8	111209640	111210640	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 1 of 25)	MT2B1|LTR|ERVL	49062.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70748105-2	chr8	70747605	70748605	+	651.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001310465, exon 13 of 17)	exon (NM_001310465, exon 13 of 17)	-6574.0	NM_001328047	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	1.5	1.0	1.0	0.5	0.0	2.0
Merged-chr13-60520117-2	chr13	60519617	60520617	+	651.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81830.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.0	2.5	5.5	0.0	0.5	0.0
Merged-chr2-164047412-2	chr2	164046912	164047912	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114079, intron 11 of 13)	intron (NM_001114079, intron 11 of 13)	22188.0	NM_001114079	381404.0	Mm.82301	NM_001114079	ENSMUSG00000054582	Pabpc1l	1810053B01Rik|Epab	poly(A) binding protein, cytoplasmic 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11851125-1	chr19	11850625	11851625	+	651.5	f0_balb.idr	Intergenic	Intergenic	4826.0	NM_001011524	258227.0	Mm.377385	NM_001011524	ENSMUSG00000060556	Olfr1418	MOR266-5	olfactory receptor 1418	protein-coding	2.5	4.5	5.0	11.5	25.5	8.5
Merged-chr7-19832877-2	chr7	19832377	19833377	+	651.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10122.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92975850-2	chr1	92975350	92976350	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271766, intron 1 of 1)	intron (NM_001271766, intron 1 of 1)	503.0	NM_001271766	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21240184-2	chr11	21239684	21240684	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290628, intron 1 of 22)	intron (NM_001290628, intron 1 of 22)	1152.0	NM_001290628	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	15.5	60.0	30.0	30.5	27.5	13.0
Merged-chr19-5422367-2	chr19	5421869	5422869	+	651.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_024176)	TTS (NM_024176)	2610.0	NM_024176	66556.0	Mm.275446	NM_024176	ENSMUSG00000024914	Drap1	2310074H19Rik|NC2-alpha	Dr1 associated protein 1 (negative cofactor 2 alpha)	protein-coding	4.0	9.5	1.0	0.0	9.0	6.0
Merged-chr5-135107341-2	chr5	135106841	135107841	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152882, intron 1 of 16)	CpG	450.0	NR_152882	58805.0	Mm.34213	NM_021455	ENSMUSG00000005373	Mlxipl	ChREBP|Mlx|WS-bHLH|Wbscr14|bHLHd14	MLX interacting protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-36183276-2	chr19	36182776	36183776	+	651.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63432.0	NM_013468	107765.0	Mm.10279	NM_013468	ENSMUSG00000024803	Ankrd1	Alrp|CARP|Crap|MARP1	ankyrin repeat domain 1 (cardiac muscle)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88959792-2	chr5	88959292	88960292	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359211, intron 3 of 26)	intron (NM_001359211, intron 3 of 26)	-68174.0	NM_001359212	54403.0	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	0.0	5.5	0.5	0.0	3.5	0.0
Merged-chr18-5114689-2	chr18	5114189	5115189	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347449, intron 27 of 30)	intron (NM_001347449, intron 27 of 30)	51042.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-64850085-2	chr16	64849585	64850585	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347245, intron 1 of 8)	intron (NM_001347245, intron 1 of 8)	1638.0	NM_001347245	72020.0	Mm.25960	NM_028059	ENSMUSG00000047141	Zfp654	1600021C16Rik|1810008K20Rik|433036|Gm5488|Znf654	zinc finger protein 654	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108046313-2	chr3	108045813	108046813	+	651.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1454.0	NM_001160411	14865.0	Mm.31203	NM_026764	ENSMUSG00000027890	Gstm4	1110004G14Rik|GSTM7-7|Gstb-4|Gstb4	glutathione S-transferase, mu 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-140949172-2	chr7	140948672	140949672	+	651.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_053088, exon 2 of 2)	3' UTR (NM_053088, exon 2 of 2)	1067.0	NM_053088	73835.0	Mm.389989	NM_053088	ENSMUSG00000025489	Ifitm5	1110003J06Rik|AW213665|Bril|DSPA1|Hrmp1|Hrtm1	interferon induced transmembrane protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27567337-2	chr2	27566837	27567837	+	651.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	52190.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95857428-2	chr11	95856929	95857929	+	651.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1388.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	8.5	14.5	4.5	0.0	3.0	1.5
Merged-chr14-70060175-2	chr14	70059675	70060675	+	651.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028560)	TTS (NM_028560)	-17270.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80024839-2	chr10	80024339	80025339	+	651.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001142701, exon 11 of 23)	exon (NM_001142701, exon 11 of 23)	5164.0	NM_027521	70719.0	Mm.243954	NM_027521	ENSMUSG00000035697	Arhgap45	6330406L22Rik|AW539505|Ha-1|Hmha1	Rho GTPase activating protein 45	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32161816-2	chr16	32161316	32162316	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347181, intron 1 of 2)	B1_Mus2|SINE|Alu	3778.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121547108-2	chr11	121546608	121547608	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029878, intron 14 of 38)	intron (NM_029878, intron 14 of 38)	-27766.0	NM_178763	319530.0	Mm.11395	NM_178763	ENSMUSG00000039238	Zfp750	A030007D23Rik|Znf750	zinc finger protein 750	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-48447080-3	chr14	48446593	48447593	+	651.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132324, intron 1 of 13)	intron (NR_132324, intron 1 of 13)	741.0	NR_132324	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	48.5	66.5	64.0	50.5	124.0	73.0
Merged-chr6-20436160-2	chr6	20435660	20436660	+	651.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	-779949.0	NM_019697	16508.0	Mm.425316	NM_019697	ENSMUSG00000060882	Kcnd2	AI839615|AW555701|Kv4.2|R75121|mKIAA1044	potassium voltage-gated channel, Shal-related family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109982163-2	chr4	109981663	109982663	+	651.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172296, exon 3 of 3)	exon (NM_172296, exon 3 of 3)	4138.0	NM_172296	242620.0	Mm.32825	NM_172296	ENSMUSG00000047143	Dmrta2	Dmrt5	doublesex and mab-3 related transcription factor like family A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-110159467-2	chr8	110158967	110159967	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007586, intron 1 of 10)	intron (NM_007586, intron 1 of 10)	8739.0	NM_007586	12308.0	Mm.2755	NM_007586	ENSMUSG00000003657	Calb2	CR	calbindin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-58584352-2	chr7	58583850	58584850	+	651.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-73852.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-5116584-2	chr9	5116084	5117084	+	651.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-181933.0	NM_009807	12362.0	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99124052-2	chr15	99123552	99124552	+	651.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-2793.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65131699-2	chr18	65131199	65132199	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 5 of 30)	intron (NM_001114386, intron 5 of 30)	108172.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	1.0	0.0	3.5	0.0	0.0	0.0
Merged-chr12-110716734-2	chr12	110716234	110717234	+	651.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-20339.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58250832-2	chr9	58250332	58251332	+	651.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1046.0	NM_178087	18854.0	Mm.392123	NM_008884	ENSMUSG00000036986	Pml	1200009E24Rik|AI661194|Trim19	promyelocytic leukemia	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79533566-2	chr11	79533066	79534066	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010897, intron 36 of 57)	RMER1A|Other|Other	-2957.0	NM_010161	14017.0	Mm.439665	NM_010161	ENSMUSG00000078771	Evi2a	AW491894|Evi-2|Evi2	ecotropic viral integration site 2a	protein-coding	2.0	1.5	0.5	0.5	1.0	1.0
Merged-chr1-9073241-2	chr1	9072741	9073741	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027671, intron 2 of 20)	L1_Mus1|LINE|L1	226636.0	NM_001290393	71096.0	Mm.336395	NM_027671	ENSMUSG00000025909	Sntg1	4933426D16Rik|G1SYN|SYN4	syntrophin, gamma 1	protein-coding	0.0	0.5	0.5	0.0	0.0	0.5
Merged-chr13-56132013-2	chr13	56131513	56132513	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159513, intron 1 of 8)	intron (NM_001159513, intron 1 of 8)	3537.0	NM_012015	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0.0	0.0	0.5	0.0	2.0	3.0
Merged-chr15-16409535-2	chr15	16409035	16410035	+	651.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A2|LTR|ERVK	-368566.0	NM_009869	12565.0	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88215129-2	chr3	88214629	88215629	+	651.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037276)	promoter-TSS (NR_037276)	-42.0	NR_037276	100526540.0		NR_037276	ENSMUSG00000092988	Mir3093	mir-3093|mmu-mir-3093	microRNA 3093	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-40973512-2	chr13	40973012	40974012	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_155347, intron 1 of 4)	intron (NR_155347, intron 1 of 4)	-27498.0	NM_026550	68083.0	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34828887-2	chr1	34828387	34829387	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160236, intron 2 of 6)	intron (NM_001160236, intron 2 of 6)	14163.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-91088576-2	chr17	91088076	91089076	+	651.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_020252, exon 2 of 23)	exon (NM_020252, exon 2 of 23)	1029.0	NM_001346957	18189.0	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16877824-2	chr7	16877324	16878324	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081655, intron 1 of 3)	intron (NM_001081655, intron 1 of 3)	2507.0	NM_001081655	629378.0	Mm.491123	NM_001081655	ENSMUSG00000078794	Dact3	EG666671|naa-3	dishevelled-binding antagonist of beta-catenin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-85061958-2	chr18	85061458	85062458	+	651.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110434.0	NM_025969	67105.0	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	translocase of inner mitochondrial membrane 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3712499-2	chr8	3711999	3712999	+	651.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8152.0	NM_029465	75863.0	Mm.109183	NM_029465	ENSMUSG00000074491	Clec4g	4930572L20Rik	C-type lectin domain family 4, member g	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-142783164-2	chr6	142782664	142783664	+	651.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	21302.0	NM_001145390	330440.0	Mm.484618	NM_001033417	ENSMUSG00000048473	Sult6b2	Gm766	sulfotransferase family 6B, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30562347-2	chr7	30561847	30562847	+	651.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170760)	promoter-TSS (NM_170760)	837.0	NM_025498	66340.0	Mm.86557	NM_025498	ENSMUSG00000036835	Psenen	1700023M09Rik|Pen-2	presenilin enhancer gamma secretase subunit	protein-coding	47.0	59.5	53.0	53.0	92.5	90.5
Merged-chr12-8864056-2	chr12	8863556	8864556	+	651.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-57251.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-107664623-2	chr7	107664123	107665123	+	651.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357436)	promoter-TSS (NM_001357436)	-855.0	NM_001357437	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102420021-2	chr12	102419521	102420521	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 2 of 13)	intron (NM_011175, intron 2 of 13)	19792.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	3.0	22.0	10.5	3.0	10.5	16.5
Merged-chr2-152754694-2	chr2	152754194	152755194	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053091, intron 1 of 4)	intron (NM_053091, intron 1 of 4)	521.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-44847950-2	chr14	44847450	44848450	+	651.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11425.0	NM_008962	19214.0	Mm.5105	NM_008962	ENSMUSG00000071489	Ptgdr	DP|PGD	prostaglandin D receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105849539-1	chr3	105849039	105850039	+	651.5	f0_balb.idr	Intergenic	Intergenic	-21319.0	NM_027025	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	9.0	7.0	5.0	9.5	13.5	11.5
Merged-chr9-63611650-2	chr9	63611150	63612150	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	9004.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29171416-1	chr11	29170916	29171916	+	651.5	f1_balb.idr	Intergenic	Intergenic	-1491.0	NM_134034	104570.0	Mm.276386	NM_134034	ENSMUSG00000020463	Ppp4r3b	AW011752|AW557776|Smek2|mKIAA1387	protein phosphatase 4 regulatory subunit 3B	protein-coding	13.5	1.5	8.0	5.0	3.5	2.5
Merged-chr10-75924479-2	chr10	75923979	75924979	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008606, intron 7 of 7)	intron (NM_008606, intron 7 of 7)	-2865.0	NM_001161853	20587.0	Mm.279751	NM_011418	ENSMUSG00000000902	Smarcb1	AU020204|Baf47|Ini1|SNF5/INI1|Snf5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-69439529-1	chr18	69439029	69440029	+	651.5	f0_balb.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	93369.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	1.0	4.5	1.0	3.0	2.0	2.5
Merged-chr17-17749590-3	chr17	17749094	17750094	+	651.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45653.0	NM_001104539	626942.0	Mm.404019	NM_001104539	ENSMUSG00000092120	Vmn2r90	EG626942	vomeronasal 2, receptor 90	protein-coding	1.5	0.0	1.0	1.5	0.0	0.0
Merged-chr4-88419590-3	chr4	88419091	88420091	+	651.43335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025760, intron 6 of 6)	intron (NM_025760, intron 6 of 6)	19335.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	34.0	21.0	14.5	32.5	21.5	26.5
Merged-chr1-159211521-2	chr1	159211021	159212021	+	651.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4b|LINE|L1	-20679.0	NM_001360878	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	4.0	3.5	0.5	4.0	0.5	4.5
Merged-chr16-55816671-2	chr16	55816171	55817171	+	651.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159395, intron 7 of 12)	intron (NM_001159395, intron 7 of 12)	5467.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-55452096-3	chr3	55451588	55452588	+	651.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357475, intron 5 of 16)	intron (NM_001357475, intron 5 of 16)	-9640.0	NM_001195539	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95624342-1	chr3	95623842	95624842	+	651.333313	f0_c57.idr	promoter-TSS (NM_019561)	promoter-TSS (NM_019561)	-638.0	NM_019561	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66169252-3	chr5	66168783	66169783	+	651.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040695, intron 2 of 2)	RSINE1|SINE|B4	-17329.0	NM_001127382	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	4.0	1.5	0.0	2.5	0.0	4.0
Merged-chr2-45069497-3	chr2	45068990	45069990	+	651.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	40787.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127252971-3	chr2	127252471	127253471	+	651.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175145, intron 2 of 3)	MIRc|SINE|MIR	4996.0	NM_175145	69470.0	Mm.200889	NM_175145	ENSMUSG00000034850	Tmem127	2310003P10Rik|AI314202|AI317350	transmembrane protein 127	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-36116866-3	chr13	36116367	36117367	+	651.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024274)	promoter-TSS (NM_024274)	490.0	NM_201358	380840.0	Mm.390576	NM_201358	ENSMUSG00000046573	Lyrm4	BC034664|Gm903	LYR motif containing 4	protein-coding	1.5	3.5	2.0	0.0	0.0	0.0
Merged-chr2-147177861-3	chr2	147177324	147178324	+	651.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001077632, exon 3 of 3)	exon (NM_001077632, exon 3 of 3)	-6259.0	NR_030769	100313531.0	Mm.405189	NR_030769	ENSMUSG00000086509	Nkx2-2os	Gm14112|Nkx2-2as|Nkx2.2AS	NK2 homeobox 2, opposite strand	ncRNA	0.0	0.0	2.0	0.0	0.0	3.0
Merged-chr5-140340696-2	chr5	140340196	140341196	+	651.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172277, exon 11 of 11)	3' UTR (NM_172277, exon 11 of 11)	8740.0	NM_001356584	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-84821482-2	chr11	84820982	84821982	+	651.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_177564, intron 5 of 6)	intron (NM_177564, intron 5 of 6)	-1967.0	NM_145433	217038.0	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik	mitochondrial rRNA methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-101027894-2	chr12	101027394	101028394	+	651.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_026681, intron 2 of 29)	intron (NM_026681, intron 2 of 29)	997.0	NM_001362342	68339.0	Mm.156217	NM_026681	ENSMUSG00000021182	Ccdc88c	0610010D24Rik|AV000935|AW324073|Daple|mKIAA1509	coiled-coil domain containing 88C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69908216-3	chr3	69907726	69908726	+	651.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48332.0	NM_001286959	66183.0	Mm.45481	NM_133675	ENSMUSG00000043461	Sptssb	1110032A04Rik|ADMP|Sssptb	serine palmitoyltransferase, small subunit B	protein-coding	0.0	0.0	1.5	0.0	0.0	1.5
Merged-chr4-41636751-3	chr4	41636254	41637254	+	651.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175138, intron 19 of 19)	MIR3|SINE|MIR	3548.0	NM_027147	69638.0	Mm.372459	NM_027147	ENSMUSG00000028445	Enho	1110065P19Rik|2310040A07Rik	energy homeostasis associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23851551-2	chr17	23851039	23852039	+	651.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2233.0	NM_027220	69814.0	Mm.244143	NM_027220	ENSMUSG00000048992	Prss32	2010001P08Rik|mT5|tryptase-5	protease, serine 32	protein-coding	0.0	1.0	0.0	0.0	0.0	1.0
Merged-chr18-80437140-2	chr18	80436664	80437664	+	651.06665	f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 10 of 12)	intron (NM_026295, intron 10 of 12)	32503.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	0.0	5.0	17.0	3.5	8.5	6.0
Merged-chr8-4778251-2	chr8	4777800	4778800	+	651.016663	f1_balb.idr|f1_c57bl6.idr	intron (NM_011369, intron 1 of 12)	intron (NM_011369, intron 1 of 12)	1267.0	NM_011369	20419.0	Mm.37801	NM_011369	ENSMUSG00000022322	Shcbp1	mPAL	Shc SH2-domain binding protein 1	protein-coding	0.0	5.5	0.0	0.0	5.5	0.0
Merged-chr18-46445524-2	chr18	46445024	46446024	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20292.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53043162-2	chr4	53042662	53043662	+	651.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 40 of 49)	intron (NM_013454, intron 40 of 49)	31282.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106233627-2	chr1	106233127	106234127	+	651.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	61758.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86210931-2	chr15	86210431	86211431	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3528.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-12050178-2	chr2	12049678	12050678	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-251068.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31127252-2	chr6	31126752	31127752	+	651.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-64159.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-137400681-2	chr6	137400181	137401181	+	651.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164401, exon 12 of 26)	exon (NM_001164401, exon 12 of 26)	-10040.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30411140-2	chr7	30410709	30411709	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2579.0	NM_011662	22177.0	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	11.5	8.0	12.0	5.0	12.5	5.0
Merged-chr11-83225628-2	chr11	83225128	83226128	+	651.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015519, exon 4 of 4)	non-coding (NR_015519, exon 4 of 4)	2052.0	NR_015519	100043636.0	Mm.295569	NR_015519	ENSMUSG00000087107	AI662270	AW496474	expressed sequence AI662270	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132786185-1	chr7	132785685	132786685	+	651.0	f0_balb.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	750.0	NM_175268	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	2.0	0.0	0.0	2.0	0.0	0.0
Merged-chr1-187635607-1	chr1	187635107	187636107	+	651.0	f1_c57bl6.idr	intron (NM_001243792, intron 1 of 7)	B4|SINE|B4	-16151.0	NM_001357534	26381.0	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding	0.0	0.0	0.0	0.0	1.5	0.0
Merged-chr1-191222761-2	chr1	191222285	191223285	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1669.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	0.0	0.0	1.5	0.0	0.0	2.5
Merged-chr15-41606281-2	chr15	41605781	41606781	+	651.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 2 of 17)	intron (NR_152565, intron 2 of 17)	157178.0	NM_001358977	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154134582-2	chr4	154134082	154135082	+	651.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011642, intron 1 of 13)	RMER1B|Other|Other	5626.0	NM_011642	22062.0	Mm.78015	NM_011642	ENSMUSG00000029026	Trp73	TAp73|Tp73|deltaNp73|p73	transformation related protein 73	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141269893-2	chr7	141269393	141270393	+	651.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028069, exon 13 of 14)	exon (NM_028069, exon 13 of 14)	-3469.0	NM_001252600	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-144917659-1	chr7	144917159	144918159	+	651.0	f1_balb.idr	exon (NM_001347537, exon 3 of 4)	exon (NM_001347537, exon 3 of 4)	2559.0	NM_001347537	72284.0	Mm.273049	NM_028184	ENSMUSG00000031072	Oraov1	2210010N10Rik|TAOS1	oral cancer overexpressed 1	protein-coding	2.5	0.0	2.5	1.0	1.5	1.0
Merged-chr2-48916042-3	chr2	48915548	48916548	+	651.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149356, intron 9 of 13)	ORR1C2|LTR|ERVL-MaLR	33219.0	NM_001177313	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-155298786-2	chr3	155298286	155299286	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CTGTG)n|Simple_repeat|Simple_repeat	205352.0	NM_028938	74435.0	Mm.195711	NM_028938	ENSMUSG00000028182	Lrriq3	4930438B07Rik|4930511J15Rik|4933403H06Rik|BB020367|Lrrc44	leucine-rich repeats and IQ motif containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121125971-2	chr5	121125471	121126471	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	65426.0	NM_001109992	19247.0	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4505896-2	chr7	4505396	4506396	+	651.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360154, intron 12 of 12)	GA-rich|Low_complexity|Low_complexity	-4216.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13992680-1	chr8	13992180	13993180	+	651.0	f0_balb.idr	intron (NR_131137, intron 1 of 2)	intron (NR_131137, intron 1 of 2)	-6260.0	NR_131136	546036.0	Mm.31785	NR_131136	ENSMUSG00000110058	Gm5907	EG546036|Gm45519|Gm845	predicted gene 5907	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76930098-2	chr12	76929598	76930598	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32150.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-62764003-2	chr13	62763473	62764473	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	3234.0	NR_030493	751548.0		NR_030493	ENSMUSG00000096098	Mir713	Mirn713|mir-713|mmu-mir-713	microRNA 713	ncRNA	6.0	0.0	0.5	3.5	0.0	0.0
Merged-chr5-123455988-2	chr5	123455488	123456488	+	651.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133917, exon 17 of 17)	3' UTR (NM_133917, exon 17 of 17)	26113.0	NM_029594	76399.0	Mm.75049	NM_029594	ENSMUSG00000029437	Il31	1700013B14Rik	interleukin 31	protein-coding	0.0	0.0	0.0	0.0	2.5	0.0
Merged-chr17-55970320-2	chr17	55969820	55970820	+	651.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159523)	promoter-TSS (NM_001159523)	-162.0	NM_001159523	20420.0	Mm.20908	NM_009168	ENSMUSG00000039154	Shd	AI413439	src homology 2 domain-containing transforming protein D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-104240257-1	chr12	104239757	104240757	+	651.0	f1_balb.idr	exon (NM_009251, exon 6 of 7)	exon (NM_009251, exon 6 of 7)	4110.0	NM_001353613	20715.0	Mm.312628	NM_009251		Serpina3g	2A2|AI119734|Spi2-1|Spi2/eb.1|Spi2A|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3G	protein-coding	1.5	2.0	1.0	0.0	0.0	6.5
Merged-chr10-128807359-2	chr10	128806859	128807859	+	651.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001359824, exon 2 of 7)	exon (NM_001359824, exon 2 of 7)	1683.0	NM_001359824	74330.0	Mm.296915	NM_028873	ENSMUSG00000025354	Dnajc14	5730551F12Rik|DNAJ|DRIP78|HDJ3|LIP6	DnaJ heat shock protein family (Hsp40) member C14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83360105-2	chr6	83359605	83360605	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie12|DNA|hAT-Charlie	10621.0	NM_175277	78653.0	Mm.391470	NM_175277	ENSMUSG00000045160	Bola3	1810056O20Rik	bolA-like 3 (E. coli)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95523309-1	chr3	95522809	95523809	+	651.0	f1_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3477.0	NM_021281	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	6.5	9.5	6.5	3.0	19.5	16.0
Merged-chr11-7344774-1	chr11	7344274	7345274	+	651.0	f1_balb.idr	Intergenic	L1_Mus1|LINE|L1	-130851.0	NM_008343	16009.0	Mm.29254	NM_008343	ENSMUSG00000020427	Igfbp3	AI649005|IGFBP-3|IGgfbp3	insulin-like growth factor binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49250647-2	chr13	49250147	49251147	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1941.0	NM_028340	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108751033-2	chr12	108750533	108751533	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42278.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-46231320-1	chr6	46230820	46231820	+	651.0	f0_balb.idr	intron (NM_001004357, intron 9 of 23)	MLT1F-int|LTR|ERVL-MaLR	-1013076.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	3.0	0.5	0.5	4.5	0.5	0.5
Merged-chr17-80686276-2	chr17	80685776	80686776	+	651.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360278, intron 1 of 33)	L1M4|LINE|L1	41749.0	NM_001360278	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53571110-2	chr19	53570610	53571610	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-29286.0	NM_007790	13006.0	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35049208-1	chr9	35048708	35049708	+	651.0	f1_c57bl6.idr	intron (NM_009178, intron 9 of 10)	intron (NM_009178, intron 9 of 10)	-67520.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	39.5	17.0	16.0	17.5	46.5	23.5
Merged-chr13-81641947-2	chr13	81641447	81642447	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8803.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29544157-1	chr11	29543657	29544657	+	651.0	f1_c57bl6.idr	intron (NM_001282118, intron 12 of 13)	B3|SINE|B2	-3793.0	NM_028504	73324.0	Mm.69388	NM_028504	ENSMUSG00000020461	Clhc1	1700034F02Rik	clathrin heavy chain linker domain containing 1	protein-coding	1.0	0.0	0.5	0.5	3.5	4.5
Merged-chr11-94869977-2	chr11	94869470	94870470	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20377.0	NM_001205037	432591.0	Mm.370372	NM_001205037		Gm11544	-	predicted gene 11544	protein-coding	1.0	12.0	5.0	0.0	6.0	3.0
Merged-chr18-60376510-2	chr18	60376010	60377010	+	651.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021792, intron 2 of 2)	RMER17A|LTR|ERVK	481.0	NM_001146275	60440.0	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-42693545-3	chr7	42693011	42694011	+	651.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008427)	promoter-TSS (NM_001008427)	-793.0	NM_001008427	434179.0	Mm.284947	NM_001008427	ENSMUSG00000069727	Zfp975	EG434179|Gm5595|mszf88	zinc finger protein 975	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-43675427-2	chr2	43674927	43675927	+	651.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289593, intron 12 of 12)	intron (NM_001289593, intron 12 of 12)	-73397.0	NM_001301832	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-64758812-3	chr18	64758293	64759293	+	651.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-97793.0	NM_001001488	54670.0	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99085293-2	chr7	99084793	99085793	+	651.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 5 of 14)	intron (NM_178635, intron 5 of 14)	55851.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17727672-1	chr6	17727172	17728172	+	651.0	f0_balb.idr	intron (NM_001289624, intron 1 of 15)	intron (NM_001289624, intron 1 of 15)	-15920.0	NM_001289627	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	11.5	46.0	27.5	4.0	18.5	13.0
Merged-chr17-31871087-1	chr17	31870587	31871587	+	651.0	f0_balb.idr	Intergenic	Intergenic	-15283.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	0.0	0.0	3.0	0.0	1.5	0.0
Merged-chr8-68314223-1	chr8	68313723	68314723	+	651.0	f1_c57bl6.idr	intron (NM_028182, intron 4 of 8)	L1_Mus1|LINE|L1	37695.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	0.0	0.5	0.0	2.0	12.5	0.0
Merged-chr17-61707345-1	chr17	61706845	61707845	+	651.0	f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	1173972.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74350740-2	chr1	74350240	74351240	+	651.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039509, intron 8 of 9)	intron (NM_001039509, intron 8 of 9)	-11368.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80060529-2	chr10	80060029	80061029	+	651.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359635, intron 23 of 31)	intron (NM_001359635, intron 23 of 31)	6510.0	NM_001037741	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30864527-1	chr5	30864027	30865027	+	651.0	f0_balb.idr	intron (NM_133350, intron 4 of 6)	intron (NM_133350, intron 4 of 6)	2720.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67317067-1	chr17	67316567	67317567	+	651.0	f0_balb.idr	intron (NM_001357625, intron 1 of 32)	MLT1E1A|LTR|ERVL-MaLR	37392.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.0	3.5	0.5	1.5	2.0	0.5
Merged-chr11-119935685-2	chr11	119935185	119936185	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7407.0	NM_001037754	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-45557085-2	chr15	45556585	45557585	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-442151.0	NM_026200	67498.0	Mm.300079	NM_026200	ENSMUSG00000022342	Kcnv1	2700023A03Rik|vibe	potassium channel, subfamily V, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59529486-3	chr4	59528991	59529991	+	651.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178164, intron 1 of 13)	intron (NM_178164, intron 1 of 13)	19873.0	NM_178164	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57340904-2	chr17	57340404	57341404	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17782.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-35288999-2	chr11	35288499	35289499	+	651.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011412, intron 4 of 35)	intron (NM_011412, intron 4 of 35)	167543.0	NM_011412	20564.0	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit guidance ligand 3	protein-coding	8.0	10.5	7.0	0.0	1.5	3.5
Merged-chr8-86891721-3	chr8	86891221	86892221	+	651.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	-6463.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0.0	7.5	2.0	0.0	0.0	0.0
Merged-chr14-47354863-1	chr14	47354363	47355363	+	651.0	f1_c57bl6.idr	Intergenic	Intergenic	-18997.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	32.5	80.0	62.0	4.5	52.5	26.5
Merged-chr16-76407416-2	chr16	76406916	76407916	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33589.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98804655-2	chr13	98804155	98805155	+	651.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172591, intron 2 of 25)	L2|LINE|L2	10794.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106221685-1	chr9	106221185	106222185	+	651.0	f1_c57bl6.idr	promoter-TSS (NM_031178)	promoter-TSS (NM_031178)	-913.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	10.0	15.0	23.0	25.5	33.5	35.0
Merged-chr14-30890831-2	chr14	30890331	30891331	+	651.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018746, intron 6 of 22)	intron (NM_018746, intron 6 of 22)	4355.0	NM_001289632	16427.0	Mm.34819	NM_018746	ENSMUSG00000021922	Itih4	ITI-HC4|Itih-4|PK-120	inter alpha-trypsin inhibitor, heavy chain 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99435684-1	chr7	99435184	99436184	+	651.0	f1_balb.idr	intron (NM_001362168, intron 4 of 17)	intron (NM_001362168, intron 4 of 17)	-30320.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	9.5	11.5	6.0	9.0	8.0	16.5
Merged-chr4-11177743-2	chr4	11177243	11178243	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	-13608.0	NM_001037134	12448.0	Mm.35867	NM_009830	ENSMUSG00000028212	Ccne2	-	cyclin E2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13447808-3	chr16	13447276	13448276	+	651.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1747.0	NR_030549	100124432.0		NR_030549	ENSMUSG00000076972	Mir193b	Mir193|Mirn193b|mir-193b	microRNA 193b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68908397-2	chr10	68907897	68908897	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER2B|DNA|TcMar-Tigger	184651.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102248311-2	chr7	102247811	102248811	+	651.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	1807.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-65126164-2	chr4	65125664	65126664	+	651.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021362, intron 1 of 21)	intron (NM_021362, intron 1 of 21)	1990.0	NM_021362	18491.0	Mm.317854	NM_021362	ENSMUSG00000028370	Pappa	8430414N03Rik|IGFBP-4ase|PAG1|PAPP-A	pregnancy-associated plasma protein A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118160638-2	chr11	118160138	118161138	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-31419.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104856276-1	chr3	104855776	104856776	+	651.0	f0_balb.idr	intron (NM_009797, intron 1 of 9)	ORR1B2|LTR|ERVL-MaLR	8229.0	NM_009797	12340.0	Mm.19142	NM_009797	ENSMUSG00000070372	Capza1	CAPZ|CAZ1|Cappa1|capZ alpha-1	capping protein (actin filament) muscle Z-line, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-102589022-2	chr10	102588522	102589522	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	76800.0	NM_146240	237504.0	Mm.282672	NM_146240	ENSMUSG00000044921	Rassf9	AW322107|Pamci	Ras association (RalGDS/AF-6) domain family (N-terminal) member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-17727013-2	chr18	17726513	17727513	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-146023.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90822332-1	chr7	90821832	90822832	+	651.0	f0_balb.idr	Intergenic	Intergenic	-268454.0	NM_011807	23859.0	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs large MAGUK scaffold protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-112363582-2	chr10	112363082	112364082	+	651.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359753, intron 2 of 4)	Lx5|LINE|L1	92309.0	NM_001359753	268345.0	Mm.336242	NM_001025581	ENSMUSG00000035681	Kcnc2	AW047325|B230117I07|KShIIIA|Kv3.2	potassium voltage gated channel, Shaw-related subfamily, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27914806-1	chr17	27914306	27915306	+	651.0	f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	5500.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	4.0	10.0	4.0	15.0	14.5	24.0
Merged-chr9-21163328-2	chr9	21162828	21163828	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2386.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119427626-2	chr8	119427126	119428126	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9536.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88375035-2	chr10	88374535	88375535	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4377.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91725083-2	chr12	91724583	91725583	+	651.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 3 of 6)	RLTR23|LTR|ERV1	61353.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172530592-3	chr1	172530053	172531053	+	650.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027972, intron 3 of 11)	intron (NM_027972, intron 3 of 11)	9423.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	2.0	7.0	7.5	0.0	5.0	3.0
Merged-chr7-140831636-3	chr7	140831139	140832139	+	650.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR21|LTR|ERVK	-3499.0	NM_001347605	76974.0	Mm.272359	NM_029821	ENSMUSG00000025481	Urah	1190003J15Rik|2810420C16Rik|HIUHase	urate (5-hydroxyiso-) hydrolase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82685607-2	chr18	82685107	82686107	+	650.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177832, intron 1 of 29)	intron (NM_177832, intron 1 of 29)	7127.0	NM_177832	329002.0	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69800789-2	chr11	69800289	69801289	+	650.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010198, intron 1 of 5)	intron (NM_010198, intron 1 of 5)	927.0	NM_001291104	14166.0	Mm.269011	NM_010198	ENSMUSG00000042826	Fgf11	Fgf-11|Fhf-3|Fhf3	fibroblast growth factor 11	protein-coding	0.0	0.0	0.5	0.0	0.0	1.5
Merged-chr13-52650775-2	chr13	52650275	52651275	+	650.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	53893.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171479111-3	chr1	171478559	171479559	+	650.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24419.0	NM_019484	56009.0	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	0.0	5.0	0.0	1.5	12.5	6.0
Merged-chr10-122119693-2	chr10	122119193	122120193	+	650.791626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027637)	promoter-TSS (NR_027637)	-4.0	NR_027637	100043513.0	Mm.429141	NR_027637	ENSMUSG00000111952	Gm4489	Gm241	predicted gene 4489	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3512771-3	chr5	3512254	3513254	+	650.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-31079.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-14667395-3	chr3	14666885	14667885	+	650.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie1|DNA|hAT-Charlie	25658.0	NM_024495	71934.0	Mm.158776	NM_024495	ENSMUSG00000027555	Car13	2310075C21Rik|Ca13	carbonic anhydrase 13	protein-coding	0.0	0.0	0.0	5.5	0.0	0.0
Merged-chr17-34074109-3	chr17	34073590	34074590	+	650.777771	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18289.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	9.5	2.5	5.0	0.5	1.5	0.0
Merged-chr10-19580940-3	chr10	19580427	19581427	+	650.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11022.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-53579013-4	chr17	53578494	53579494	+	650.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151733, intron 1 of 16)	intron (NR_151733, intron 1 of 16)	-5132.0	NM_001190846	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-109562378-2	chr7	109561878	109562878	+	650.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001326, intron 2 of 19)	intron (NM_001001326, intron 2 of 19)	42246.0	NR_028079	100302499.0	Mm.482651	NR_028079	ENSMUSG00000065016	Snora3	MBI-28	small nucleolar RNA, H/ACA box 3	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55622267-2	chr4	55621815	55622815	+	650.75	f0_balb.idr|f1_balb.idr	Intergenic	L2c|LINE|L2	-89840.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	24.5	46.0	19.0	12.5	41.0	30.5
Merged-chr19-46708082-3	chr19	46707586	46708586	+	650.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020577, exon 3 of 11)	exon (NM_020577, exon 3 of 11)	643.0	NM_020577	57344.0	Mm.28566	NM_020577	ENSMUSG00000003559	As3mt	2310045H08Rik|Cyt19	arsenic (+3 oxidation state) methyltransferase	protein-coding	0.0	5.5	5.0	11.0	6.5	4.0
Merged-chr1-171474443-3	chr1	171473915	171474915	+	650.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-29063.0	NM_019484	56009.0	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	3.0	2.0	6.0	2.5	22.0	8.0
Merged-chr13-73831550-2	chr13	73831050	73832050	+	650.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347535, intron 2 of 8)	intron (NM_001347535, intron 2 of 8)	16081.0	NM_028186	72293.0	Mm.45506	NM_028186	ENSMUSG00000021567	Nkd2	2210403L10Rik|AW212591|mNkd2	naked cuticle 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166957023-3	chr2	166956543	166957543	+	650.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111895, intron 3 of 11)	intron (NR_111895, intron 3 of 11)	7674.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-104353980-1	chr7	104353480	104354480	+	650.666687	f0_balb.idr	promoter-TSS (NM_175677)	promoter-TSS (NM_175677)	-622.0	NM_001146007	319236.0	Mm.425502	NM_175677	ENSMUSG00000057143	Trim12c	9230105E10Rik|Trim12-2	tripartite motif-containing 12C	protein-coding	72.5	140.0	107.0	88.0	223.0	167.5
Merged-chr3-87363887-3	chr3	87363359	87364359	+	650.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009690, intron 2 of 5)	B1_Mm|SINE|Alu	5978.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	43.0	59.5	51.5	12.0	57.0	38.5
Merged-chr17-71012132-3	chr17	71011630	71012630	+	650.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-7427.0	NM_010867	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	8.0	6.5	1.0	0.0	3.5	0.0
Merged-chr9-107909047-3	chr9	107908558	107909558	+	650.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_109782, intron 1 of 18)	intron (NR_109782, intron 1 of 18)	2169.0	NM_009074	19882.0	Mm.3901	NM_009074	ENSMUSG00000032584	Mst1r	CD136|CDw136|Fv-2|Fv2|PTK8|Ron|STK	macrophage stimulating 1 receptor (c-met-related tyrosine kinase)	protein-coding	4.5	0.0	3.5	0.0	0.0	0.0
Merged-chr18-62033290-6	chr18	62032879	62033879	+	650.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80304.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	1.5	13.0	24.5	19.0	17.5	26.5
Merged-chr2-90562252-2	chr2	90561746	90562746	+	650.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	18401.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	14.5	40.5	14.0	12.0	49.0	31.0
Merged-chr5-150117018-4	chr5	150116591	150117591	+	650.643738	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	98416.0	NM_001289566	140498.0	Mm.444643	NM_080468	ENSMUSG00000053368	Rxfp2	Gpr106|Great|Lgr8	relaxin/insulin-like family peptide receptor 2	protein-coding	3.0	6.5	10.0	3.0	6.5	14.0
Merged-chr14-31156627-2	chr14	31156127	31157127	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138672, intron 21 of 68)	B3A|SINE|B2	12014.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47373213-2	chr14	47372713	47373713	+	650.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145953)	promoter-TSS (NM_001145953)	-647.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120464672-2	chr6	120464172	120465172	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 1 of 12)	intron (NM_008359, intron 1 of 12)	1475.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118663466-2	chr2	118662939	118663939	+	650.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033254)	promoter-TSS (NM_001033254)	-138.0	NM_001033254	214230.0	Mm.241857	NM_001033254	ENSMUSG00000074923	Pak6	4732456M09	p21 (RAC1) activated kinase 6	protein-coding	0.5	0.0	1.0	0.0	1.0	5.5
Merged-chr3-41598987-2	chr3	41598487	41599487	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130184, intron 6 of 10)	intron (NM_001130184, intron 6 of 10)	34107.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-85747878-2	chr9	85747378	85748378	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175371, intron 1 of 27)	B2_Mm1t|SINE|B2	1456.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-60897421-1	chr8	60896921	60897921	+	650.5	f0_balb.idr	intron (NM_028299, intron 4 of 7)	LTR67B|LTR|ERVL	7028.0	NM_001357270	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122274962-2	chr3	122274461	122275461	+	650.5	f0_balb.idr|f0_c57.idr	intron (NM_153806, intron 1 of 6)	intron (NM_153806, intron 1 of 6)	547.0	NM_153806	99480.0	Mm.398647	NM_153806	ENSMUSG00000039756	Dnttip2	4930588M11Rik|AA408582|AU014960|HSU15552	deoxynucleotidyltransferase, terminal, interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72442696-2	chr6	72442195	72443195	+	650.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3137.0	NM_145569	232087.0	Mm.29815	NM_145569	ENSMUSG00000053907	Mat2a	D630045P18Rik	methionine adenosyltransferase II, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76624223-2	chr11	76623723	76624723	+	650.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46484.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135667562-2	chr4	135667062	135668062	+	650.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18895.0	NM_174851	242700.0	Mm.259623	NM_174851	ENSMUSG00000062157	Ifnlr1	CRF2-12|Il28ra	interferon lambda receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-16908143-2	chr12	16907643	16908643	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009072, intron 1 of 32)	B2_Mm2|SINE|B2	13165.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	2.0	33.5	6.0	5.0	15.5	3.5
Merged-chr2-166184617-2	chr2	166184117	166185117	+	650.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28934.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155082780-2	chr1	155082280	155083280	+	650.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151545, exon 1 of 7)	non-coding (NR_151545, exon 1 of 7)	484.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-77030153-2	chr5	77029653	77030653	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027970, intron 1 of 8)	intron (NM_027970, intron 1 of 8)	-11290.0	NR_077218	68246.0	Mm.319633	NR_077218	ENSMUSG00000086632	1700112J05Rik	1700110A09Rik	RIKEN cDNA 1700112J05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152812228-2	chr2	152811728	152812728	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	PB1D7|SINE|Alu	16261.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116055367-2	chr4	116054867	116055867	+	650.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-1491.0	NM_028142	72181.0	Mm.282560	NM_028142	ENSMUSG00000028706	Nsun4	2310010O12Rik|2810405F18Rik|AI507900|Shtap	NOL1/NOP2/Sun domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-102355572-2	chr1	102355072	102356072	+	650.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1199804.0	NR_037989	100504525.0	Mm.87065	NR_037989	ENSMUSG00000100684	Gm20268	-	predicted gene, 20268	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56558673-2	chr17	56558173	56559173	+	650.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4286.0	NR_130128	100504425.0	Mm.384143	NR_130128	ENSMUSG00000110218	Gm20219	Tincr	predicted gene, 20219	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-10323455-2	chr10	10322955	10323955	+	650.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	148859.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-125559410-2	chr1	125558910	125559910	+	650.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1185.0	NM_001356294	74150.0	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114449816-2	chr6	114449316	114450316	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008285, intron 2 of 2)	L2a|LINE|L2	-8706.0	NM_001317124	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122014534-2	chr14	122014034	122015034	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 8 of 8)	intron (NM_026861, intron 8 of 8)	-20140.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	1.0	0.0	3.5	6.0	0.0	3.5
Merged-chr8-46791350-3	chr8	46790839	46791839	+	650.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	51594.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-28548864-2	chr2	28548364	28549364	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145836, intron 14 of 17)	MIRc|SINE|MIR	14539.0	NM_009885	12613.0	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30241515-2	chr13	30241015	30242015	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153546, intron 12 of 12)	intron (NM_153546, intron 12 of 12)	-94841.0	NM_177322	11607.0	Mm.35062	NM_177322	ENSMUSG00000049115	Agtr1a	1810074K20Rik|AG2S|AI551199|AT1|AT1a|AT2R1|AT2R1A|Agtr-1a|Agtr1|Angtr-1a	angiotensin II receptor, type 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87219900-2	chr17	87219400	87220400	+	650.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24958.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	1.0	8.5	5.0	7.0	0.0	0.0
Merged-chr2-32629030-2	chr2	32628530	32629530	+	650.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021515)	promoter-TSS (NM_021515)	-470.0	NM_021515	11636.0	Mm.29189	NM_021515	ENSMUSG00000026817	Ak1	Ak-1|B430205N08Rik	adenylate kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100846434-2	chr7	100845934	100846934	+	650.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177073, exon 11 of 11)	3' UTR (NM_177073, exon 11 of 11)	16979.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0.0	3.5	3.0	3.0	1.0	9.0
Merged-chr10-75220905-2	chr10	75220405	75221405	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145826, intron 1 of 18)	intron (NM_001145826, intron 1 of 18)	8515.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7041094-2	chr19	7040594	7041594	+	650.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1068.0	NM_016737	20867.0	Mm.258633	NM_016737	ENSMUSG00000024966	Stip1	Hop|Sti1|p60	stress-induced phosphoprotein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53333887-2	chr19	53333387	53334387	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008543, intron 2 of 5)	intron (NM_001008543, intron 2 of 5)	3479.0	NM_001008543	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-19444258-2	chr6	19443759	19444759	+	650.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-111083.0	NR_105789	102465192.0		NR_105789	ENSMUSG00000099149	Mir6370	Gm27480|mmu-mir-6370	microRNA 6370	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67782455-2	chr18	67781955	67782955	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360934, intron 2 of 8)	PB1D10|SINE|Alu	7579.0	NM_028112	72124.0	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	3.5	0.0	2.5	7.0	0.0	2.5
Merged-chr10-118814089-2	chr10	118813589	118814589	+	650.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54814.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126917325-2	chr8	126916825	126917825	+	650.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28596.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0.0	0.0	0.0	1.5	0.0	0.0
Merged-chr2-45126905-2	chr2	45126405	45127405	+	650.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9463.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-81862489-2	chr12	81861989	81862989	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018814, intron 1 of 35)	intron (NM_018814, intron 1 of 35)	2459.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-85920877-2	chr13	85920375	85921375	+	650.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125920.0	NM_007749	12867.0	Mm.378898	NM_007749	ENSMUSG00000017778	Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding	0.0	0.0	2.0	1.5	0.0	0.0
Merged-chr4-101071864-2	chr4	101071364	101072364	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183024, intron 1 of 11)	B1_Mus2|SINE|Alu	2826.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126108314-2	chr4	126107761	126108761	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 1 of 10)	intron (NM_028800, intron 1 of 10)	4304.0	NM_001145827	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr1-13301598-2	chr1	13301098	13302098	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	70831.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	3.0	0.0	1.5	0.0	0.0	0.5
Merged-chr1-34898069-2	chr1	34897569	34898569	+	650.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	48080.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73378965-2	chr14	73378465	73379465	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008410, intron 1 of 5)	intron (NM_008410, intron 1 of 5)	6324.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-11369977-1	chr10	11369477	11370477	+	650.5	f0_balb.idr	intron (NM_010146, intron 1 of 3)	ORR1G|LTR|ERVL-MaLR	26532.0	NM_010146	13853.0	Mm.89946	NM_010146	ENSMUSG00000055493	Epm2a	TG-B|Tg(TcraK,TcrbK)TG-BFlv	epilepsy, progressive myoclonic epilepsy, type 2 gene alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95294541-2	chr3	95294041	95295041	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133858, intron 7 of 9)	intron (NM_133858, intron 7 of 9)	11606.0	NM_199475	75007.0	Mm.279287	NM_133858	ENSMUSG00000038712	Mindy1	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|Fam63a|cI-40|mKIAA1390|ni	MINDY lysine 48 deubiquitinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95069912-2	chr8	95069412	95070412	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042715, intron 8 of 17)	intron (NM_001042715, intron 8 of 17)	-11289.0	NM_028805	74187.0	Mm.28382	NM_028805	ENSMUSG00000031787	Katnb1	2410003J24Rik|KAT	katanin p80 (WD40-containing) subunit B 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29178289-2	chr7	29177745	29178745	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026545, intron 3 of 6)	PB1D9|SINE|Alu	2428.0	NM_026545	57296.0	Mm.273152	NM_026545	ENSMUSG00000030591	Psmd8	6720456J22Rik|AA407360|AL033291|AL033322|AL033323|C76433	proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr14-121995960-2	chr14	121995489	121996489	+	650.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 7 of 8)	MLT1B|LTR|ERVL-MaLR	-30796.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	16.5	29.5	43.5	3.5	17.0	16.5
Merged-chr14-62222906-4	chr14	62222399	62223399	+	650.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	70080.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55521291-3	chr1	55520795	55521795	+	650.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	115349.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	4.5	2.0	5.0	14.0	2.5	3.0
Merged-chr16-55968844-2	chr16	55968344	55969344	+	650.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_024218, intron 3 of 5)	URR1A|DNA|hAT-Charlie	2569.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61678016-2	chr10	61677516	61678516	+	650.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_126477, intron 1 of 1)	URR1B|DNA|hAT-Charlie	-2269.0	NM_001358488	20224.0	Mm.391794	NM_009120	ENSMUSG00000020088	Sar1a	1600019H17Rik|Sara|Sara1	secretion associated Ras related GTPase 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43030352-3	chr17	43029866	43030866	+	650.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 1 of 5)	intron (NM_178589, intron 1 of 5)	13811.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	22.5	49.0	31.5	30.0	28.5	47.5
Merged-chr10-60349868-2	chr10	60349368	60350368	+	650.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_028732, intron 1 of 6)	intron (NM_028732, intron 1 of 6)	3017.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9334231-3	chr3	9333810	9334810	+	650.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68768.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91741124-3	chr16	91740649	91741649	+	650.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	11778.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-4000767-3	chr15	4000265	4001265	+	650.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045740, intron 2 of 2)	L1MD2|LINE|L1	4726.0	NR_045740	328489.0	Mm.447020	NR_045740	ENSMUSG00000097662	Gm2093	100039196|A630020A06	predicted gene 2093	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-28441926-2	chr15	28441433	28442433	+	650.208374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133365, intron 70 of 78)	RLTR13B1|LTR|ERVK	238167.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0.0	0.0	0.5	0.0	0.0	1.5
Merged-chr14-74990677-4	chr14	74990185	74991185	+	650.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15599.0	NR_046078	100043169.0	Mm.145900	NR_046078	ENSMUSG00000115019	Gm4278	-	predicted gene 4278	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155571664-4	chr4	155571177	155572177	+	650.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355599, intron 1 of 10)	MLT1B|LTR|ERVL-MaLR	7862.0	NM_001355599	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12753956-2	chr17	12753456	12754456	+	650.1999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_010515, intron 1 of 47)	intron (NM_010515, intron 1 of 47)	12645.0	NR_027784	104103.0	Mm.26553	NR_002853	ENSMUSG00000078247	Airn	2810051F02Rik|2810434M15Rik|AI256653|AI597500|AW049873|Air|B930018I07Rik|D17Ertd663e|IGF2RAS	antisense Igf2r RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51851340-2	chr13	51850840	51851840	+	650.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	4665.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-142814797-4	chr6	142814295	142815295	+	650.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045707, intron 2 of 6)	intron (NR_045707, intron 2 of 6)	564.0	NR_045707	665037.0	Mm.401493	NR_045707	ENSMUSG00000072683	Gm7457	EG665037	predicted gene 7457	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-39708690-2	chr2	39708190	39709190	+	650.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	-482341.0	NM_024209	67857.0	Mm.389242	NM_024209	ENSMUSG00000026753	Ppp6c	2310003C10Rik|Pp6C	protein phosphatase 6, catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27569990-3	chr17	27569512	27570512	+	650.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4285.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	4.0	16.0	13.5	8.0	35.5	40.0
Merged-chr5-40953130-3	chr5	40952621	40953621	+	650.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	754570.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63445576-2	chr14	63445076	63446076	+	650.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_177628, intron 2 of 3)	intron (NM_177628, intron 2 of 3)	9182.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78107882-2	chr9	78107382	78108382	+	650.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081490, intron 1 of 12)	intron (NM_001081490, intron 1 of 12)	774.0	NM_023605	71538.0	Mm.28584	NM_023605	ENSMUSG00000001366	Fbxo9	9030401P18Rik|AA986398	f-box protein 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45691714-4	chr17	45691205	45692205	+	650.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026732, intron 1 of 2)	intron (NM_026732, intron 1 of 2)	5356.0	NM_026732	68463.0	Mm.379158	NM_026732	ENSMUSG00000023939	Mrpl14	1110006I11Rik|AI846816|MRP-L32|Rpml32	mitochondrial ribosomal protein L14	protein-coding	0.5	20.0	17.5	1.0	2.5	5.5
Merged-chr11-14449404-3	chr11	14448908	14449908	+	650.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	149817.0	NR_045918	73307.0	Mm.399291	NR_045918	ENSMUSG00000085561	1700046C09Rik	-	RIKEN cDNA 1700046C09 gene	ncRNA	3.5	9.0	12.0	0.0	2.5	3.5
Merged-chr2-6309695-3	chr2	6309190	6310190	+	650.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 4 of 6)	MLT1I|LTR|ERVL-MaLR	-13067.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	2.0	0.5	0.0	8.0	0.0	4.5
Merged-chr2-122301696-3	chr2	122301204	122302204	+	650.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025777, exon 5 of 6)	exon (NM_025777, exon 5 of 6)	2804.0	NM_025777	66811.0	Mm.171333	NM_025777	ENSMUSG00000027225	Duoxa2	9030623N16Rik|Nip2	dual oxidase maturation factor 2	protein-coding	0.0	4.5	0.0	0.0	0.0	0.0
Merged-chr2-80275282-3	chr2	80274755	80275755	+	650.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17215.0	NM_177256	320769.0	Mm.60992	NM_177256	ENSMUSG00000050114	Prdx6b	1-cysPrx-P1|4930414C22Rik|Aop2-rs1|Prdx5-rs1|Prdx6-ps1|Prdx6-rs1|Prdx6-rs1-ps	peroxiredoxin 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25573559-2	chr9	25573059	25574059	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 3 of 7)	intron (NM_026189, intron 3 of 7)	91962.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144897915-2	chr3	144897415	144898415	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1904.0	NR_126537	622139.0	Mm.447150	NM_001039222	ENSMUSG00000074196	Clca4c-ps	Clca4c|EG622139|Gm18718|Gm6289	chloride channel accessory 4C, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26839318-2	chr17	26838818	26839818	+	650.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008700, exon 2 of 2)	exon (NM_008700, exon 2 of 2)	2247.0	NM_008700	18091.0	Mm.41974	NM_008700	ENSMUSG00000015579	Nkx2-5	Csx|Nkx-2.5|Nkx2.5|tinman	NK2 homeobox 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58520509-2	chr13	58520009	58521009	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90368.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104220437-2	chr8	104219937	104220937	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28121.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78880724-1	chr17	78880224	78881224	+	650.0	f1_balb.idr	intron (NM_011163, intron 1 of 15)	B3A|SINE|B2	1848.0	NM_011163	19106.0	Mm.378990	NM_011163	ENSMUSG00000024079	Eif2ak2	2310047A08Rik|4732414G15Rik|AI467567|AI747578|Pkr|Prkr|Tik	eukaryotic translation initiation factor 2-alpha kinase 2	protein-coding	3.0	3.0	11.0	0.0	0.0	4.5
Merged-chr10-91685348-2	chr10	91684848	91685848	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-203481.0	NR_152729	102633867.0	Mm.351514	NR_152729	ENSMUSG00000111657	Gm31592	-	predicted gene, 31592	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54999118-2	chr13	54998618	54999618	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153131, intron 7 of 15)	intron (NM_153131, intron 7 of 15)	21701.0	NM_001206390	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	15.0	2.5	2.0	0.0	3.5	1.5
Merged-chr4-62373188-2	chr4	62372688	62373688	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175090, intron 1 of 4)	intron (NM_175090, intron 1 of 4)	12487.0	NM_175090	20529.0	Mm.248637	NM_175090	ENSMUSG00000066150	Slc31a1	4930445G01Rik|AI787263|AU016967|Ctr1	solute carrier family 31, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32257087-2	chr2	32256587	32257587	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011675, intron 5 of 6)	intron (NM_011675, intron 5 of 6)	3018.0	NM_011675	22245.0	Mm.425076	NM_011675	ENSMUSG00000002550	Uck1	URK1|Umpk	uridine-cytidine kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27285166-2	chr3	27284666	27285666	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31911.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126776915-2	chr8	126776415	126777415	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-72105.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	2.0	2.5	4.5	2.5	0.0	0.0
Merged-chr1-64303771-2	chr1	64303271	64304271	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-182382.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31746982-2	chr2	31746482	31747482	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001283047, intron 2 of 11)	intron (NM_001283047, intron 2 of 11)	-12957.0	NM_009594	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87030301-2	chr11	87029801	87030801	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30D2_MM|LTR|ERV1	-36539.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143462162-2	chr7	143461662	143462662	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1112.0	NM_001161624	12577.0	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19357216-2	chr10	19356716	19357716	+	650.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_053008, exon 1 of 1)	exon (NM_053008, exon 1 of 1)	677.0	NM_053008	94222.0	Mm.156946	NM_053008	ENSMUSG00000045591	Olig3	Bhlhb7|bHLHe20|oligo3	oligodendrocyte transcription factor 3	protein-coding	0.0	0.0	0.0	3.0	0.0	0.0
Merged-chr4-107013706-2	chr4	107013206	107014206	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198438, intron 5 of 16)	intron (NM_198438, intron 5 of 16)	53160.0	NM_025500	56280.0	Mm.29517	NM_025500	ENSMUSG00000028622	Mrpl37	2300004O14Rik|AI132596|MRP-L2|Rpml2	mitochondrial ribosomal protein L37	protein-coding	2.0	4.0	9.5	0.0	2.0	4.0
Merged-chr16-92791057-2	chr16	92790557	92791557	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	35017.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35044679-2	chr17	35044178	35045178	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013600, intron 4 of 23)	intron (NM_013600, intron 4 of 23)	1944.0	NM_013600	17687.0	Mm.24192	NM_013600	ENSMUSG00000007035	Msh5	Mut5	mutS homolog 5	protein-coding	1.0	12.5	1.5	0.0	2.0	2.5
Merged-chr7-38090106-1	chr7	38089606	38090606	+	650.0	f1_c57bl6.idr	Intergenic	Intergenic	17384.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	3.0	0.0	0.5	0.0	3.5	0.0
Merged-chr7-83799005-2	chr7	83798505	83799505	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4166.0	NM_029335	75556.0	Mm.17649	NM_029335	ENSMUSG00000011154	Cfap161	1700026D08Rik|AW047638|AW551802	cilia and flagella associated protein 161	protein-coding	0.0	0.0	9.5	6.5	8.5	1.0
Merged-chr15-79744367-2	chr15	79743832	79744832	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045069, intron 2 of 3)	MTD|LTR|ERVL-MaLR	1634.0	NR_045069	100504191.0	Mm.421420	NR_045069	ENSMUSG00000087543	Gm16576	-	predicted gene 16576	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127132583-2	chr2	127132083	127133083	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144818, intron 1 of 17)	intron (NM_144818, intron 1 of 17)	1371.0	NM_144818	215387.0	Mm.29786	NM_144818	ENSMUSG00000034906	Ncaph	A730011O11Rik|Brrn1|CAP-H|HCAP-H|mCAP-H	non-SMC condensin I complex, subunit H	protein-coding	1.0	0.0	0.0	0.0	0.0	3.5
Merged-chr2-120100769-2	chr2	120100269	120101269	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 4 of 5)	intron (NM_133838, intron 4 of 5)	53806.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	0.5	2.5	2.5	3.5	1.5	2.5
Merged-chr19-45804603-1	chr19	45804103	45805103	+	650.0	f1_balb.idr	intron (NM_145703, intron 1 of 9)	intron (NM_145703, intron 1 of 9)	7688.0	NM_001276358	80906.0	Mm.213204	NM_030716	ENSMUSG00000025221	Kcnip2	KChIP2	Kv channel-interacting protein 2	protein-coding	11.0	7.5	0.5	0.0	7.5	3.5
Merged-chr16-17890564-2	chr16	17890064	17891064	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109750, intron 1 of 9)	intron (NM_001109750, intron 1 of 9)	1164.0	NM_010048	13356.0	Mm.254515	NM_010048	ENSMUSG00000003166	Dgcr2	9930034O06Rik|DGS-C|Dgsc|Idd|Lan|Sez12|mKIAA0163	DiGeorge syndrome critical region gene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115194429-1	chr11	115193929	115194929	+	650.0	f1_c57bl6.idr	intron (NM_001033393, intron 2 of 9)	B3|SINE|B2	6942.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	30.0	42.5	31.5	8.5	10.0	4.5
Merged-chr17-56030368-2	chr17	56029868	56030868	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013664, intron 1 of 9)	intron (NM_013664, intron 1 of 9)	6269.0	NM_013664	20405.0	Mm.1773	NM_013664	ENSMUSG00000003200	Sh3gl1	C77078|EEN|SH3P8|Sh3d2b	SH3-domain GRB2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-49825137-2	chr18	49824637	49825637	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-7181.0	NR_045386	76609.0	Mm.396238	NR_045386	ENSMUSG00000100134	1700065O20Rik	-	RIKEN cDNA 1700065O20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-14134123-3	chr10	14133623	14134623	+	650.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 6 of 9)	intron (NM_001358782, intron 6 of 9)	167744.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	6.0	16.0	5.0	3.5	5.0	6.5
Merged-chr12-99645604-2	chr12	99645104	99646104	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-17630.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87913320-2	chr6	87912820	87913820	+	650.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173737)	promoter-TSS (NM_173737)	-656.0	NM_173737	232210.0	Mm.246241	NM_173737	ENSMUSG00000030060	Hmces	8430410A17Rik|C85376	5-hydroxymethylcytosine (hmC) binding, ES cell specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123727948-1	chr5	123727448	123728448	+	650.0	f1_balb.idr	TTS (NM_025438)	TTS (NM_025438)	-6904.0	NM_027494	70650.0	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	0.0	6.0	0.0	0.0	0.0	0.0
Merged-chr9-90195785-1	chr9	90195285	90196285	+	650.0	f1_c57bl6.idr	exon (NM_001326294, exon 20 of 23)	exon (NM_001326294, exon 20 of 23)	32807.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	2.0	3.0	0.5	2.0	7.5	2.0
Merged-chr2-5797324-2	chr2	5796761	5797761	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133837, intron 11 of 12)	intron (NM_133837, intron 11 of 12)	-47773.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	17.0	4.5	5.0	11.0	1.0	16.5
Merged-chr2-34796208-2	chr2	34795708	34796708	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145522, intron 2 of 7)	intron (NM_145522, intron 2 of 7)	3704.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-21648938-2	chr17	21648438	21649438	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1673.0	NM_001166497	73229.0	Mm.296733	NM_001166497	ENSMUSG00000035868	Zfp983	3110052M02Rik|mszf57|mszf71	zinc finger protein 983	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139225471-2	chr7	139224970	139225970	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001143755, intron 6 of 8)	intron (NM_001143755, intron 6 of 8)	-12163.0	NM_001162540	57740.0	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	6.5	35.0	27.0	11.5	9.0	16.0
Merged-chr4-99227408-1	chr4	99226908	99227908	+	650.0	f1_c57bl6.idr	intron (NM_175029, intron 7 of 10)	intron (NM_175029, intron 7 of 10)	33261.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	0.0	0.0	3.0	1.0	0.0	5.0
Merged-chr14-105275419-2	chr14	105274919	105275919	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029561, intron 1 of 7)	intron (NM_029561, intron 1 of 7)	16746.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	0.0	2.0	0.0	0.0	0.0	0.0
Merged-chr16-39196432-1	chr16	39195932	39196932	+	650.0	f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-7482.0	NR_153800	102640746.0		NR_153800		Gm36742	-	predicted gene, 36742	ncRNA	9.0	3.0	27.5	1.0	7.0	5.0
Merged-chr7-139377047-2	chr7	139376547	139377547	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12062.0	NM_183144	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-44030004-2	chr4	44029504	44030504	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080384, intron 5 of 5)	intron (NM_001080384, intron 5 of 5)	17354.0	NM_001290470	12757.0	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32576245-2	chr2	32575745	32576745	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198191, intron 1 of 9)	intron (NM_198191, intron 1 of 9)	527.0	NM_198191	227733.0	Mm.78923	NM_198191	ENSMUSG00000046854	Pip5kl1	BC028795	phosphatidylinositol-4-phosphate 5-kinase-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125410190-2	chr6	125409690	125410690	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-29686.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26663716-2	chr17	26663214	26664214	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12682.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25181135-1	chr2	25180635	25181635	+	650.0	f0_balb.idr	exon (NM_025980, exon 1 of 1)	exon (NM_025980, exon 1 of 1)	377.0	NM_025980	67122.0	Mm.46539	NM_025980	ENSMUSG00000078202	Nrarp	2700054M22Rik	Notch-regulated ankyrin repeat protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-83929626-3	chr2	83929082	83930082	+	650.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027964, intron 3 of 8)	ORR1C2|LTR|ERVL-MaLR	11644.0	NM_027964	71861.0	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-137900771-2	chr1	137900271	137901271	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65684.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-137898647-1	chr2	137898147	137899147	+	650.0	f0_balb.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-357937.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132636718-3	chr4	132636160	132637160	+	650.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2386.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	9.5	14.5	8.5	2.0	13.0	3.0
Merged-chr1-85882228-1	chr1	85881728	85882728	+	650.0	f0_balb.idr	Intergenic	IAPEY3-int|LTR|ERVK	-12282.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-33909936-2	chr1	33909436	33910436	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276764, intron 2 of 102)	intron (NM_001276764, intron 2 of 102)	1711.0	NM_001276764	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123422703-3	chr8	123422197	123423197	+	650.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023279)	TTS (NM_023279)	11133.0	NM_023279	22152.0	Mm.40068	NM_023279	ENSMUSG00000062380	Tubb3	3200002H15Rik|M(beta)3|M(beta)6	tubulin, beta 3 class III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44468678-2	chr7	44468178	44469178	+	650.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026690)	TTS (NM_026690)	698.0	NM_001205070	66124.0	Mm.358691	NM_025368	ENSMUSG00000038695	Josd2	1110007C05Rik	Josephin domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84579445-2	chr17	84578945	84579945	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357987, intron 14 of 28)	intron (NM_001357987, intron 14 of 28)	-47054.0	NM_172256	213575.0	Mm.246119	NM_172256	ENSMUSG00000024253	Dync2li1	4933404O11Rik|CGI-60|D2lic|LIC3|mD2LIC	dynein cytoplasmic 2 light intermediate chain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22155207-2	chr9	22154707	22155707	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1639.0	NM_001082532	66268.0	Mm.28924	NM_025457	ENSMUSG00000010607	Pigyl	1810008A14Rik|PIG-Y|Pigy	phosphatidylinositol glycan anchor biosynthesis, class Y-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-66045516-1	chr12	66045016	66046016	+	650.0	f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	238885.0	NM_001162933	238217.0	Mm.188575	NM_001162933	ENSMUSG00000060499	Rpl10l	EG238217	ribosomal protein L10-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73720566-2	chr12	73720066	73721066	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 9 of 13)	intron (NM_008856, intron 9 of 13)	135770.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92832383-1	chr1	92831883	92832883	+	650.0	f0_balb.idr	intron (NM_016696, intron 1 of 8)	CpG	738.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103737054-1	chr3	103736554	103737554	+	650.0	f1_balb.idr	exon (NM_133859, exon 2 of 3)	exon (NM_133859, exon 2 of 3)	947.0	NM_133859	99543.0	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	0.0	0.0	0.0	1.0	0.0	2.0
Merged-chr5-105584167-3	chr5	105583664	105584664	+	650.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	64693.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-113442346-2	chr9	113441846	113442846	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR50|LTR|ERVL	144806.0	NR_040760	102688.0	Mm.394901	NR_040760	ENSMUSG00000109890	AU023762	-	expressed sequence AU023762	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92696675-2	chr1	92696175	92697175	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47834.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-56635464-2	chr9	56634964	56635964	+	650.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001311076, exon 1 of 2)	5' UTR (NM_001311076, exon 1 of 2)	184.0	NM_001311076	235402.0	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-30606404-1	chr15	30605904	30606904	+	650.0	f1_balb.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-432722.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	24.0	8.0	7.5	25.5	7.5	16.0
Merged-chr3-96574799-2	chr3	96574385	96575385	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-8084.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	1.0	36.5	18.5	12.5	8.0	9.0
Merged-chr19-45155892-2	chr19	45155392	45156392	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021901, intron 2 of 2)	CpG	5177.0	NM_021901	21908.0	Mm.391203	NM_021901	ENSMUSG00000025215	Tlx1	Hox-11|Hox11|Tlx-1	T cell leukemia, homeobox 1	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr5-122421523-2	chr5	122421023	122422023	+	650.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019805)	promoter-TSS (NM_019805)	-921.0	NM_019805	56317.0	Mm.37341	NM_019805	ENSMUSG00000029466	Anapc7	APC7|AW545589	anaphase promoting complex subunit 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9618909-3	chr18	9618443	9619443	+	650.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007593, exon 1 of 1)	exon (NM_007593, exon 1 of 1)	526.0	NM_007593	26369.0	Mm.195831	NM_007593	ENSMUSG00000050996	Cetn1	caltractin	centrin 1	protein-coding	0.0	3.0	3.0	0.0	2.5	4.5
Merged-chr19-42778839-2	chr19	42778339	42779339	+	650.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362410)	promoter-TSS (NM_001362410)	-193.0	NM_001362410	192236.0	Mm.218381	NM_019424	ENSMUSG00000025188	Hps1	6030422N11Rik|BB405864|Gm21361|Hps|ep	HPS1, biogenesis of lysosomal organelles complex 3 subunit 1	protein-coding	0.5	0.0	0.0	1.5	0.0	3.0
Merged-chr4-105163374-2	chr4	105162874	105163874	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 1 of 5)	intron (NM_080555, intron 1 of 5)	6027.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	24.0	17.5	21.0	4.5	31.5	10.5
Merged-chr8-84232467-1	chr8	84231967	84232967	+	650.0	f1_c57bl6.idr	intron (NM_172503, intron 2 of 13)	RMER21A|LTR|ERV1	4575.0	NM_172503	212168.0	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	1.5	0.0	0.0	2.5	4.5	7.5
Merged-chr13-60719234-2	chr13	60718734	60719734	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 7 of 26)	B4A|SINE|B4	67130.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0.0	4.0	1.0	2.0	0.0	0.5
Merged-chr10-81450813-2	chr10	81450313	81451313	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22318.0	NM_001311127	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64240675-2	chr5	64240175	64241175	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	B4A|SINE|B4	10318.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	46.0	124.0	67.0	32.0	98.5	73.0
Merged-chr4-59058150-1	chr4	59057650	59058650	+	650.0	f0_balb.idr	Intergenic	Intergenic	22994.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	4.5	4.0	1.5	0.0	1.0	4.5
Merged-chr18-42601870-2	chr18	42601370	42602370	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22218.0	NM_181543	240239.0	Mm.186779	NM_181543	ENSMUSG00000042816	Gpr151	C130082O03Rik|GalRL|PGR7|nGPCR-2037	G protein-coupled receptor 151	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59220206-2	chr2	59219706	59220706	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	59356.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90702502-2	chr5	90702002	90703002	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56796.0	NM_009141	20311.0	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22549460-2	chr16	22548960	22549960	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346673, intron 18 of 23)	intron (NM_001346673, intron 18 of 23)	-17276.0	NR_106170	102465887.0		NR_106170	ENSMUSG00000099071	Mir8095	Gm27566|mmu-mir-8095	microRNA 8095	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106478093-2	chr11	106477593	106478593	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 1 of 21)	intron (NM_023913, intron 1 of 21)	9703.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-123371956-2	chr10	123371456	123372456	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252387, intron 1 of 4)	intron (NM_001252387, intron 1 of 4)	107880.0	NM_001252387	268354.0	Mm.51939	NM_182807	ENSMUSG00000044071	Fam19a2	6330575M02|FAM19A2 TAFA-2|Sam2|TAFA2|Tafa-2	family with sequence similarity 19, member A2	protein-coding	5.0	0.0	0.5	0.0	1.5	1.0
Merged-chr13-112142696-3	chr13	112142147	112143147	+	649.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-145804.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-59235601-4	chr3	59235101	59236101	+	649.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 19 of 43)	intron (NM_177855, intron 19 of 43)	-24719.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88471735-3	chr4	88471223	88472223	+	649.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32797.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30321057-4	chr7	30320498	30321498	+	649.875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033140)	TTS (NM_001033140)	1377.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	8.5	23.5	10.0	21.0	46.5	34.0
Merged-chr17-35077148-2	chr17	35076648	35077648	+	649.833374	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027366, exon 1 of 3)	5' UTR (NM_027366, exon 1 of 3)	206.0	NM_027366	70274.0	Mm.250491	NM_027366	ENSMUSG00000013766	Ly6g6e	2310011I02Rik|G6e	lymphocyte antigen 6 complex, locus G6E	protein-coding	16.5	47.0	28.0	18.5	48.5	26.5
Merged-chr16-18424148-2	chr16	18423648	18424648	+	649.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007744, intron 1 of 4)	B4|SINE|B4	-2269.0	NM_001353143	26462.0	Mm.390906	NM_013711	ENSMUSG00000075704	Txnrd2	AA118373|ESTM573010|TGR|Tr3|Trxr2|Trxrd2	thioredoxin reductase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141015473-4	chr4	141014976	141015976	+	649.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161799, intron 8 of 8)	intron (NM_001161799, intron 8 of 8)	4839.0	NM_008546	17150.0	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141217404-2	chr7	141216904	141217904	+	649.833313	f1_balb.idr|f1_c57bl6.idr	exon (NM_025886, exon 3 of 6)	exon (NM_025886, exon 3 of 6)	1544.0	NM_025886	66985.0	Mm.21202	NM_025886	ENSMUSG00000038618	Rassf7	2400009B11Rik|AW210608	Ras association (RalGDS/AF-6) domain family (N-terminal) member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34338872-3	chr18	34338375	34339375	+	649.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	7730.0	NM_025527	66384.0	Mm.29452	NM_025527	ENSMUSG00000014504	Srp19	2310020D23Rik	signal recognition particle 19	protein-coding	1.0	2.0	0.5	6.0	2.0	0.0
Merged-chr14-25495007-2	chr14	25494507	25495507	+	649.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	35822.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76284890-2	chr15	76284390	76285390	+	649.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_028852, intron 3 of 4)	intron (NM_028852, intron 3 of 4)	6078.0	NR_037240	100526548.0		NR_037240	ENSMUSG00000093169	Mir3079	mmu-mir-3079	microRNA 3079	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112292645-2	chr13	112292137	112293137	+	649.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168404, intron 2 of 7)	intron (NM_001168404, intron 2 of 7)	4119.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0.0	1.0	0.0	1.5	0.0	0.5
Merged-chr2-155099641-3	chr2	155099194	155100194	+	649.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040634, intron 1 of 2)	intron (NR_040634, intron 1 of 2)	385.0	NR_040634	100504268.0	Mm.410858	NR_040634	ENSMUSG00000087254	2310005A03Rik	-	RIKEN cDNA 2310005A03 gene	ncRNA	43.0	77.5	23.5	17.5	17.0	38.0
Merged-chr4-46916997-3	chr4	46916497	46917497	+	649.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081141, intron 1 of 18)	intron (NM_001081141, intron 1 of 18)	74717.0	NM_001081141	242425.0	Mm.101909	NM_001081141	ENSMUSG00000039809	Gabbr2	GABABR2|Gb2|Gm425|Gpr51	gamma-aminobutyric acid (GABA) B receptor, 2	protein-coding	2.5	0.0	2.5	0.0	0.0	0.5
Merged-chr13-114460806-3	chr13	114460321	114461321	+	649.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1870.0	NM_008046	14313.0	Mm.4913	NM_008046	ENSMUSG00000021765	Fst	AL033346|FS	follistatin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117959786-2	chr2	117959286	117960286	+	649.666687	f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	137858.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	16.5	22.0	13.0	17.5	5.5	18.0
Merged-chr6-72431407-3	chr6	72430878	72431878	+	649.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019802)	TTS (NM_019802)	-7305.0	NR_046011	78108.0	Mm.440743	NR_046011	ENSMUSG00000108591	Particl	4930414L22Rik|AI449819	promoter of Mat2a antisense radiation induced circulating long non-coding RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104227690-3	chr3	104227179	104228179	+	649.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21B|LTR|ERVL	-7273.0	NM_001159354	99470.0	Mm.264849	NM_133853	ENSMUSG00000052539	Magi3	4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding	2.5	1.0	0.0	1.5	5.0	4.5
Merged-chr7-4227152-3	chr7	4226620	4227620	+	649.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10634.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-16555929-1	chr16	16555429	16556429	+	649.666687	f0_balb.idr	intron (NM_001301817, intron 1 of 16)	B1F|SINE|Alu	4290.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13687400-3	chr10	13686898	13687898	+	649.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025446, intron 4 of 5)	intron (NM_025446, intron 4 of 5)	-134256.0	NM_001347361	56535.0	Mm.282711	NM_019961	ENSMUSG00000019809	Pex3	1700014F15Rik|2810027F19Rik|2900010N04Rik	peroxisomal biogenesis factor 3	protein-coding	1.5	4.5	12.5	0.0	1.5	5.0
Merged-chr17-30972138-3	chr17	30971607	30972607	+	649.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177465, intron 5 of 21)	intron (NM_177465, intron 5 of 21)	17424.0	NM_177465	52020.0	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25910915-2	chr15	25910415	25911415	+	649.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 3 of 8)	intron (NM_001034851, intron 3 of 8)	-22637.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114859502-2	chr5	114859002	114860002	+	649.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026263, intron 2 of 11)	intron (NM_026263, intron 2 of 11)	5788.0	NM_026263	67593.0	Mm.251409	NM_026263	ENSMUSG00000029564	4930519G04Rik	1700014B12Rik	RIKEN cDNA 4930519G04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-18514383-3	chr12	18513878	18514878	+	649.638916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033157)	promoter-TSS (NM_001033157)	-132.0	NM_001033157	236366.0	Mm.352227	NM_001033157	ENSMUSG00000073197	5730507C01Rik	-	RIKEN cDNA 5730507C01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44405296-2	chr11	44404796	44405796	+	649.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303244, intron 2 of 7)	intron (NM_001303244, intron 2 of 7)	5233.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	10.5	7.5	8.0	10.5	7.5	8.0
Merged-chr14-77921937-3	chr14	77921428	77922428	+	649.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029495, intron 1 of 11)	B4A|SINE|B4	17689.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167227565-3	chr2	167227046	167228046	+	649.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008968, exon 2 of 10)	exon (NM_008968, exon 2 of 10)	12991.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-92818070-2	chr12	92817570	92818570	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	626753.0	NR_126436	75295.0	Mm.243878	NR_126436	ENSMUSG00000113164	4930559C10Rik	-	RIKEN cDNA 4930559C10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-61224361-2	chr19	61223861	61224861	+	649.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009970)	TTS (NM_009970)	4057.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	5.0	11.5	7.5	5.0	4.5	0.5
Merged-chr15-89124004-2	chr15	89123504	89124504	+	649.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163319)	promoter-TSS (NM_001163319)	-854.0	NM_001163319	328580.0	Mm.380934	NM_001163319	ENSMUSG00000051786	Tubgcp6	AI843275|D430023H11|GCP-6|mKIAA1669	tubulin, gamma complex associated protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55053901-1	chr1	55053401	55054401	+	649.5	f1_balb.idr	intron (NM_026424, intron 1 of 3)	intron (NM_026424, intron 1 of 3)	1131.0	NM_001039710	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	22.0	51.0	55.0	10.0	66.5	27.5
Merged-chr14-14355210-2	chr14	14354710	14355710	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008369, intron 11 of 11)	intron (NM_008369, intron 11 of 11)	8715.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70797847-2	chr8	70797347	70798347	+	649.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106099)	promoter-TSS (NR_106099)	-288.0	NR_106099	102466823.0		NR_106099	ENSMUSG00000099031	Mir7240	Gm27487|mmu-mir-7240	microRNA 7240	ncRNA	1.0	10.0	3.5	0.5	7.0	6.0
Merged-chr10-14544864-2	chr10	14544364	14545364	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002268, intron 1 of 24)	intron (NM_001002268, intron 1 of 24)	172.0	NM_001002268	215798.0	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-53923405-2	chr10	53922905	53923905	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 9 of 12)	Lx4B|LINE|L1	152391.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128627158-3	chr4	128626644	128627644	+	649.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-8525.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65435533-2	chr3	65435033	65436033	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42980.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	3.5	0.0	0.0	5.0	0.0	0.0
Merged-chr17-69225121-2	chr17	69224621	69225621	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	52085.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-95950504-2	chr5	95950004	95951004	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6435.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100314762-2	chr11	100314262	100315262	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5187.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37211342-2	chr10	37210842	37211842	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-72416.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132493804-2	chr4	132493304	132494304	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144907, intron 9 of 9)	intron (NM_144907, intron 9 of 9)	16652.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55099377-2	chr14	55098910	55099910	+	649.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153083)	TTS (NM_153083)	4626.0	NM_153083	105663.0	Mm.319204	NM_153083	ENSMUSG00000045691	Thtpa	AW122966	thiamine triphosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-26865584-2	chr18	26865084	26866084	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1111427.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43878641-2	chr5	43878135	43879135	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	9826.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	35.0	102.5	45.0	25.0	60.0	50.0
Merged-chr1-162997447-2	chr1	162996947	162997947	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-12919.0	NM_008030	14262.0	Mm.2900	NM_008030	ENSMUSG00000026691	Fmo3	AW111792	flavin containing monooxygenase 3	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr7-141635011-2	chr7	141634511	141635511	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330001, intron 32 of 33)	PB1D10|SINE|Alu	14310.0	NR_106030	102466798.0		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-17942556-2	chr13	17942056	17943056	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019491, intron 1 of 4)	intron (NM_019491, intron 1 of 4)	1661.0	NM_019491	56044.0	Mm.27348	NM_019491	ENSMUSG00000008859	Rala	3010001O15Rik|AW322615|Ral|Rasl1	v-ral simian leukemia viral oncogene A (ras related)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57462209-3	chr17	57461603	57462603	+	649.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 18 of 22)	MTC|LTR|ERVL-MaLR	83211.0	NM_001104591	224916.0	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61528661-2	chr8	61528161	61529161	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 16 of 21)	intron (NM_001293772, intron 16 of 21)	40927.0	NM_145595	234309.0	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4623256-2	chr16	4622756	4623756	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025571, intron 1 of 4)	intron (NM_025571, intron 1 of 4)	1690.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11249229-2	chr8	11248729	11249729	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009931, intron 2 of 51)	intron (NM_009931, intron 2 of 51)	-63576.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116382975-2	chr7	116382475	116383475	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011083, intron 8 of 32)	B1F|SINE|Alu	-48785.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126812855-2	chr8	126812355	126813355	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	-36165.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101170569-2	chr15	101170069	101171069	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3503.0	NM_007395	11479.0	Mm.308467	NM_007395	ENSMUSG00000000532	Acvr1b	6820432J04|ALK-4|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding	0.0	0.0	0.0	0.0	9.5	0.5
Merged-chr16-45093590-2	chr16	45093139	45094139	+	649.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026439)	promoter-TSS (NM_026439)	-372.0	NM_026439	67896.0	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	0.0	6.0	4.0	3.0	1.0	1.0
Merged-chr17-87287514-2	chr17	87287014	87288014	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 1 of 19)	intron (NM_028639, intron 1 of 19)	4628.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-10834836-2	chr8	10834336	10835336	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47618.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77915030-2	chr9	77914530	77915530	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2335.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-123057301-2	chr10	123056801	123057801	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163024, intron 2 of 34)	B2_Mm2|SINE|B2	19204.0	NM_001163024	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	8.0	0.0	0.0	8.0	0.0	0.0
Merged-chr4-152313395-2	chr4	152312895	152313895	+	649.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033489, exon 10 of 17)	exon (NM_001033489, exon 10 of 17)	5230.0	NM_001033489	433809.0	Mm.156205	NM_001033489	ENSMUSG00000058498	Rnf207	D330010C22Rik|Gm143	ring finger protein 207	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60614494-2	chr13	60613994	60614994	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	12283.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21568919-2	chr19	21568419	21569419	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83872.0	NM_025423	66206.0	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-119948386-2	chr6	119947886	119948886	+	649.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001199083, exon 19 of 28)	exon (NM_001199083, exon 19 of 28)	45688.0	NM_001166383	19365.0	Mm.149	NM_011236	ENSMUSG00000030166	Rad52	Rad52yh	RAD52 homolog, DNA repair protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80008055-2	chr15	80007555	80008555	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011057, intron 1 of 6)	MIR3|SINE|MIR	6753.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	0.0	6.5	5.5	1.0	6.5	6.0
Merged-chr5-74056323-2	chr5	74055823	74056823	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177561, intron 1 of 8)	intron (NM_177561, intron 1 of 8)	12088.0	NM_177561	69727.0	Mm.48795	NM_177561	ENSMUSG00000054814	Usp46	1190009E20Rik|2410018I08Rik|AI451644	ubiquitin specific peptidase 46	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31171593-2	chr14	31171093	31172093	+	649.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_022656, exon 21 of 21)	exon (NM_022656, exon 21 of 21)	-2952.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131988033-2	chr2	131987533	131988533	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	36996.0	NM_001278520	26434.0	Mm.180750	NM_023043	ENSMUSG00000027338	Prnd	AI450264|Dpl|PrPLP|doppel	prion like protein doppel	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134586351-3	chr4	134585872	134586872	+	649.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 4 of 11)	intron (NM_207237, intron 4 of 11)	-18521.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71471574-2	chr17	71471074	71472074	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028887, intron 1 of 47)	RMER6A|LTR|ERVK	3769.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-11158759-2	chr9	11158259	11159259	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-253984.0	NM_001170787	244682.0	Mm.187021	NM_001033359	ENSMUSG00000039488	Cntn5	6720426O10Rik|A830025P08Rik|Gm507|NB-2	contactin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-151993498-2	chr2	151992998	151993998	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3013.0	NM_027172	69698.0	Mm.258262	NM_027172	ENSMUSG00000027463	Slc52a3	2310046K01Rik|RFT2	solute carrier protein family 52, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-52001793-2	chr11	52001293	52002293	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1327.0	NM_009458	22210.0	Mm.384918	NM_009458	ENSMUSG00000020390	Ube2b	E2-14k|HR6B|Rad6b|mHR6B	ubiquitin-conjugating enzyme E2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150265123-2	chr4	150264651	150265651	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16765.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	1.5	0.0	0.0	3.0	1.0	2.0
Merged-chr6-5384277-3	chr6	5383808	5384808	+	649.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023048, intron 1 of 5)	intron (NM_023048, intron 1 of 5)	922.0	NM_023048	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	3.0	1.5	1.5	0.0	0.5	1.5
Merged-chr5-55834278-2	chr5	55833735	55834735	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	1484243.0	NR_038045	330086.0	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13	predicted gene 10440	ncRNA	2.5	1.5	1.0	7.0	0.0	3.5
Merged-chr5-139411291-2	chr5	139410791	139411791	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177000, intron 1 of 1)	intron (NM_177000, intron 1 of 1)	4904.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26441410-2	chr2	26440910	26441910	+	649.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_153125, exon 2 of 30)	exon (NM_153125, exon 2 of 30)	3806.0	NM_153125	227648.0	Mm.206371	NM_153125	ENSMUSG00000026924	Sec16a	AU024582|C230052J16Rik	SEC16 homolog A, endoplasmic reticulum export factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80780546-2	chr15	80780046	80781046	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144812, intron 3 of 24)	intron (NM_144812, intron 3 of 24)	-18064.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101258087-2	chr15	101257587	101258587	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8759.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40702231-2	chr4	40701731	40702731	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025444, intron 1 of 7)	intron (NM_001025444, intron 1 of 7)	685.0	NM_025545	66408.0	Mm.430710	NM_025545	ENSMUSG00000028411	Aptx	2410016G21Rik|AA388047|FHA-HIT	aprataxin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144687073-2	chr3	144686573	144687573	+	649.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019464, exon 9 of 9)	3' UTR (NM_019464, exon 9 of 9)	33262.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92814725-2	chr16	92814225	92815225	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	11349.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85457676-2	chr12	85457176	85458176	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16214.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58328297-2	chr11	58327775	58328775	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001256520, intron 1 of 2)	MER67B|LTR|ERV1	2064.0	NM_001256520	319475.0	Mm.72124	NM_178761	ENSMUSG00000049755	Zfp672	4930488P06Rik|4930511N19Rik|Znf672	zinc finger protein 672	protein-coding	3.0	44.5	16.0	4.5	13.0	11.0
Merged-chr12-104835630-2	chr12	104835130	104836130	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040682, intron 1 of 12)	intron (NM_001040682, intron 1 of 12)	29446.0	NR_104436	94040.0	Mm.244078	NM_053155	ENSMUSG00000021097	Clmn	9330188N17Rik|AI428889|AI788815|mKIAA1188	calmin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67247641-2	chr7	67247141	67248141	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 8 of 11)	MTC|LTR|ERVL-MaLR	25025.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-69204839-2	chr10	69204339	69205339	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3713.0	NM_001252636	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152654118-2	chr3	152653618	152654618	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355635, intron 3 of 8)	B4|SINE|B4	-12795.0	NR_040386	99542.0	Mm.394921	NR_040386	ENSMUSG00000097745	AI115009	-	expressed sequence AI115009	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-68262057-2	chr15	68261557	68262557	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-3201.0	NM_198644	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	1.5	0.0	0.5	0.0	0.0	2.0
Merged-chr4-9629365-3	chr4	9628850	9629850	+	649.450012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001177856, exon 5 of 5)	3' UTR (NM_001177856, exon 5 of 5)	14367.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	1.5	0.0	4.0	1.5	1.0	4.5
Merged-chr2-145898709-3	chr2	145898184	145899184	+	649.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4557.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	1.0	12.0	6.0	5.0	19.5	15.0
Merged-chr6-135170039-3	chr6	135169544	135170544	+	649.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1829.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	1.0	8.5	3.5	0.0	5.5	5.5
Merged-chr12-35800743-3	chr12	35800259	35801259	+	649.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-105641.0	NR_045050	71581.0	Mm.100110	NR_045050	ENSMUSG00000113985	9130015A21Rik	100043575|Gm4527	RIKEN cDNA 9130015A21 gene	ncRNA	0.0	0.0	1.5	0.5	0.0	2.0
Merged-chr3-105712054-3	chr3	105711558	105712558	+	649.399963	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163356, intron 1 of 1)	intron (NM_001163356, intron 1 of 1)	6600.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	0.0	2.0	0.0	0.0	0.0	0.5
Merged-chr11-75625478-3	chr11	75624990	75625990	+	649.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008850, exon 11 of 12)	exon (NM_008850, exon 11 of 12)	-5530.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-149194287-2	chr6	149193787	149194787	+	649.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5575.0	NM_001113424	232566.0	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-89858717-3	chr13	89858219	89859219	+	649.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028012, intron 7 of 7)	intron (NM_028012, intron 7 of 7)	-116207.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	0.5	4.5	0.0	0.0	7.0	4.0
Merged-chr11-116102744-3	chr11	116102210	116103210	+	649.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	7525.0	NM_001205081	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167219562-4	chr2	167219090	167220090	+	649.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008968, intron 5 of 9)	intron (NM_008968, intron 5 of 9)	20947.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62032323-3	chr15	62031822	62032822	+	649.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5664.0	NR_132747	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8817161-2	chr19	8816661	8817661	+	649.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_027412, intron 2 of 3)	intron (NM_027412, intron 2 of 3)	2133.0	NM_027412	70387.0	Mm.261082	NM_027412	ENSMUSG00000071660	Ttc9c	2210019E14Rik|6330408J23Rik	tetratricopeptide repeat domain 9C	protein-coding	0.5	7.0	2.0	10.0	3.5	0.5
Merged-chr11-46449036-3	chr11	46448544	46449544	+	649.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5887.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	6.5	0.0	1.5	2.0	7.0	0.0
Merged-chr15-62360837-4	chr15	62360336	62361336	+	649.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-141385.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.0	0.5	0.0	0.5	7.0	0.0
Merged-chr7-19365426-2	chr7	19364926	19365926	+	649.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001010836, intron 1 of 12)	intron (NM_001010836, intron 1 of 12)	4210.0	NM_001010836	333654.0	Mm.333640	NM_001010836	ENSMUSG00000040734	Ppp1r13l	AV260376|IASPP|Nkip1|wa3	protein phosphatase 1, regulatory (inhibitor) subunit 13 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122700735-2	chr8	122700191	122701191	+	649.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1582.0	NM_009824	12398.0	Mm.194339	NM_009824	ENSMUSG00000006362	Cbfa2t3	A630044F12Rik|AI465270|AW229127|Cbfa2t3h|ETO-2|Eto2|MTGR2	core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	protein-coding	4.5	2.5	1.5	0.0	0.0	0.5
Merged-chr16-55753167-2	chr16	55752691	55753691	+	649.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	68947.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81422238-2	chr15	81421738	81422738	+	649.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_177310, intron 2 of 8)	intron (NM_177310, intron 2 of 8)	-13965.0	NM_021317	57755.0	Mm.440590	NM_021317	ENSMUSG00000047108	Dnajb7	4933424H20Rik|Dj5|mDj5	DnaJ heat shock protein family (Hsp40) member B7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103184653-2	chr3	103184153	103185153	+	649.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	12998.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165844765-6	chr1	165844277	165845277	+	649.222229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113391, intron 1 of 7)	intron (NM_001113391, intron 1 of 7)	56096.0	NM_001113392	12503.0	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121515860-3	chr10	121515361	121516361	+	649.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39611.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-117602806-2	chr13	117602306	117603306	+	649.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_010408, exon 1 of 8)	exon (NM_010408, exon 1 of 8)	486.0	NM_010408	15165.0	Mm.343429	NM_010408	ENSMUSG00000021730	Hcn1	Bcng1|C630013B14Rik|HAC2	hyperpolarization-activated, cyclic nucleotide-gated K+ 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12411491-2	chr13	12410991	12411991	+	649.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_144835, intron 16 of 44)	intron (NM_144835, intron 16 of 44)	16116.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78451404-2	chr15	78450904	78451904	+	649.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355601, intron 10 of 17)	intron (NM_001355601, intron 10 of 17)	17230.0	NM_001355601	71753.0	Mm.34056	NM_027902	ENSMUSG00000016942	Tmprss6	1300008A22Rik	transmembrane serine protease 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156617420-3	chr1	156616917	156617917	+	649.155579	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 1 of 12)	(GGAA)n|Simple_repeat|Simple_repeat	56922.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	14.5	24.5	11.5	6.5	4.0	7.0
Merged-chr2-101905912-4	chr2	101905425	101906425	+	649.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19663.0	NM_029635	76501.0	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	1.0	0.0	4.5	0.0	2.0	0.0
Merged-chr14-72708842-4	chr14	72708333	72709333	+	649.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 1 of 25)	intron (NM_207636, intron 1 of 25)	1170.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85752423-3	chr1	85751919	85752919	+	649.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_106172)	TTS (NR_106172)	471.0	NR_106172	102466882.0		NR_106172	ENSMUSG00000098634	Mir8096	Gm27479|mmu-mir-8096	microRNA 8096	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3835263-3	chr12	3834727	3835727	+	649.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001271753, exon 2 of 23)	exon (NM_001271753, exon 2 of 23)	27017.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84922205-3	chr17	84921726	84922726	+	649.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027929, intron 2 of 3)	intron (NR_027929, intron 2 of 3)	-34515.0	NM_001159497	19043.0	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31781690-4	chr14	31781118	31782118	+	649.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024604, intron 1 of 27)	intron (NM_001024604, intron 1 of 27)	48797.0	NM_001024604	105522.0	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25130413-1	chr17	25129913	25130913	+	649.0	f1_c57bl6.idr	Intergenic	Intergenic	-2978.0	NM_011930	26373.0	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	11.5	27.0	10.0	3.0	10.0	7.5
Merged-chr13-93195080-2	chr13	93194580	93195580	+	649.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B1|LTR|ERVL	-2663.0	NM_001361537	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	6.0	4.0	9.0	0.0	5.0	11.0
Merged-chr15-84236866-2	chr15	84236366	84237366	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	L1MC2|LINE|L1	4823.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44927268-1	chr7	44926768	44927768	+	649.0	f1_balb.idr	intron (NM_001077264, intron 1 of 22)	intron (NM_001077264, intron 1 of 22)	2222.0	NM_007458	11771.0	Mm.6877	NM_007458	ENSMUSG00000060279	Ap2a1	Adtaa	adaptor-related protein complex 2, alpha 1 subunit	protein-coding	0.0	4.5	0.0	1.0	0.0	5.0
Merged-chr8-68362048-1	chr8	68361548	68362548	+	649.0	f0_balb.idr	intron (NM_172753, intron 9 of 9)	intron (NM_172753, intron 9 of 9)	-6411.0	NR_038189	73609.0	Mm.443247	NR_038181	ENSMUSG00000085197	1700125H03Rik	4930510D22Rik	RIKEN cDNA 1700125H03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157459131-2	chr2	157458631	157459631	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009271, intron 6 of 14)	intron (NM_009271, intron 6 of 14)	34838.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	2.0	4.5	1.5	2.5	2.0	1.5
Merged-chr2-64551970-2	chr2	64551470	64552470	+	649.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-453932.0	NM_001267847	60344.0	Mm.130769	NM_021716	ENSMUSG00000075324	Fign	fi|fidget	fidgetin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86205018-2	chr15	86204518	86205518	+	649.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-9441.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-96474906-2	chr7	96474440	96475440	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 3 of 32)	LTR79|LTR|ERVL	-132976.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr10-79832279-2	chr10	79831779	79832779	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	11258.0	NM_030218	78906.0	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101860776-1	chr5	101860276	101861276	+	649.0	f1_balb.idr	intron (NM_172882, intron 53 of 66)	intron (NM_172882, intron 53 of 66)	95646.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	5.0	1.5	3.0	10.5	0.5	0.5
Merged-chr18-15212900-2	chr18	15212400	15213400	+	649.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61454.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9424079-1	chr13	9423579	9424579	+	649.0	f0_balb.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	147554.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34147598-3	chr8	34147108	34148108	+	649.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026609)	promoter-TSS (NM_026609)	-869.0	NM_026609	68192.0	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	29.5	89.5	45.5	51.5	75.0	58.0
Merged-chr4-32161722-1	chr4	32161222	32162222	+	649.0	f1_balb.idr	Intergenic	Intergenic	197615.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	50.0	70.0	82.5	53.5	97.5	81.5
Merged-chr10-79972963-2	chr10	79972463	79973463	+	649.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_130455, exon 2 of 9)	exon (NM_130455, exon 2 of 9)	2239.0	NM_130455	170483.0	Mm.391566	NM_130455	ENSMUSG00000035745	Grin3b	GluN3B|NR3B	glutamate receptor, ionotropic, NMDA3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26499645-2	chr2	26499145	26500145	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 2 of 33)	intron (NM_008714, intron 2 of 33)	4177.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124896570-1	chr6	124896070	124897070	+	649.0	f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-8370.0	NM_013488	12504.0	Mm.2209	NM_013488	ENSMUSG00000023274	Cd4	L3T4|Ly-4	CD4 antigen	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr11-118760612-1	chr11	118760112	118761112	+	649.0	f1_c57bl6.idr	intron (NM_001024931, intron 2 of 14)	intron (NM_001024931, intron 2 of 14)	429.0	NM_001285438	52897.0	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding	8.0	3.0	0.0	1.0	0.0	0.0
Merged-chr7-125556384-1	chr7	125555884	125556884	+	649.0	f1_c57bl6.idr	intron (NM_001008700, intron 1 of 10)	intron (NM_001008700, intron 1 of 10)	4102.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	29.5	56.0	28.5	20.5	34.5	12.0
Merged-chr1-182953317-2	chr1	182952817	182953817	+	649.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1471.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	2.0	0.0	1.5	2.0	0.0	2.0
Merged-chr1-74366119-2	chr1	74365619	74366619	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033345, intron 6 of 9)	B1_Mur4|SINE|Alu	4011.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101910839-2	chr13	101910339	101911339	+	649.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-142622.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44091318-1	chr9	44090818	44091818	+	649.0	f1_c57bl6.idr	exon (NM_016808, exon 6 of 13)	exon (NM_016808, exon 6 of 13)	6398.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	0.0	0.0	1.0	0.0	0.5	0.0
Merged-chr9-44130907-1	chr9	44130407	44131407	+	649.0	f1_balb.idr	intron (NR_152189, intron 1 of 1)	intron (NR_152189, intron 1 of 1)	3578.0	NR_152189	100038560.0	Mm.429758	NR_152189		Gm10687	-	predicted gene 10687	ncRNA	2.5	1.0	1.5	2.0	0.0	0.0
Merged-chr4-44970313-2	chr4	44969813	44970813	+	649.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11081.0	NM_080289	76238.0	Mm.196574	NM_080289	ENSMUSG00000035637	Grhpr	1110059D05Rik|6430629L09Rik|Glxr	glyoxylate reductase/hydroxypyruvate reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10849087-1	chr19	10848587	10849587	+	649.0	f0_balb.idr	intron (NM_023044, intron 2 of 7)	B4|SINE|B4	6543.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118873464-3	chr9	118873028	118874028	+	649.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 11 of 13)	intron (NM_001113514, intron 11 of 13)	-53008.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	7.5	1.0	2.5	7.5	7.5	1.0
Merged-chr13-17992104-3	chr13	17991586	17992586	+	649.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025904, intron 1 of 2)	intron (NM_025904, intron 1 of 2)	1265.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119300781-1	chr2	119300281	119301281	+	649.0	f1_c57bl6.idr	Intergenic	Intergenic	12039.0	NM_172269	228545.0	Mm.294761	NM_172269	ENSMUSG00000034216	Vps18	9930024E13Rik	VPS18 CORVET/HOPS core subunit	protein-coding	0.0	1.5	2.0	0.0	0.0	2.5
Merged-chr18-32354036-2	chr18	32353536	32354536	+	649.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23181.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-70112518-1	chr15	70112018	70113018	+	649.0	f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	188285.0	NR_045071	100503580.0	Mm.404646	NR_045071	ENSMUSG00000116483	Gm19782	-	predicted gene, 19782	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-46440141-2	chr5	46439641	46440641	+	649.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-507732.0	NR_110478	78106.0	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA	3.0	2.0	0.0	0.0	2.0	0.0
Merged-chr11-97523694-2	chr11	97523194	97524194	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 16 of 19)	intron (NM_018873, intron 16 of 19)	-23354.0	NM_001289118	100141474.0	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	0.0	2.0	0.5	0.0	3.5	2.5
Merged-chr7-130654301-2	chr7	130653801	130654801	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004468, intron 3 of 21)	intron (NM_001004468, intron 3 of 21)	-38255.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84630402-2	chr18	84629902	84630902	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177450, intron 6 of 11)	intron (NM_177450, intron 6 of 11)	19693.0	NM_177450	338403.0	Mm.23278	NM_177450	ENSMUSG00000056162	Cndp1	AI746433|Cn1	carnosine dipeptidase 1 (metallopeptidase M20 family)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152686250-1	chr2	152685750	152686750	+	649.0	f1_c57bl6.idr	promoter-TSS (NM_025543)	promoter-TSS (NM_025543)	-898.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	20.0	114.5	59.5	5.0	11.5	9.5
Merged-chr2-27039436-2	chr2	27038936	27039936	+	649.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11438.0	NM_001177627	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86139426-2	chr15	86138926	86139926	+	649.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145475, exon 13 of 13)	3' UTR (NM_145475, exon 13 of 13)	-46302.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0.0	1.5	0.5	0.0	11.5	0.5
Merged-chr5-121330535-1	chr5	121330035	121331035	+	649.0	f0_c57.idr	intron (NM_181421, intron 49 of 75)	IAPLTR2a|LTR|ERVK	54874.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128437705-2	chr8	128437205	128438205	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358959, intron 6 of 16)	intron (NM_001358959, intron 6 of 16)	78464.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	2.5	16.0	4.0	2.5	5.0	3.5
Merged-chr15-83725051-2	chr15	83724551	83725551	+	649.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271472)	promoter-TSS (NM_001271472)	-12.0	NM_022723	64706.0	Mm.40393	NM_022723	ENSMUSG00000016763	Scube1	7330410C13Rik|A630023E24Rik	signal peptide, CUB domain, EGF-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30034216-2	chr16	30033716	30034716	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045878, intron 2 of 3)	intron (NR_045878, intron 2 of 3)	5263.0	NR_045878	71528.0	Mm.297640	NR_045878		9030404E10Rik	-	RIKEN cDNA 9030404E10 gene	ncRNA	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr15-97665002-2	chr15	97664502	97665502	+	649.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	40820.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-52381278-2	chr10	52380778	52381778	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053187, intron 1 of 7)	intron (NM_053187, intron 1 of 7)	846.0	NM_053187	94221.0	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120802408-2	chr8	120801908	120802908	+	649.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63769.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-30607587-2	chr15	30607087	30608087	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-431539.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	27.5	21.0	18.0	9.5	27.0	14.0
Merged-chr4-45529392-2	chr4	45528941	45529941	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	1387.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	17.0	33.5	19.0	25.0	16.5	28.0
Merged-chr15-30738803-3	chr15	30738306	30739306	+	649.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 9 of 21)	intron (NM_001355502, intron 9 of 21)	-300320.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108657583-2	chr6	108657088	108658088	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_104577, intron 1 of 6)	(CAGG)n|Simple_repeat|Simple_repeat	-3041.0	NM_011498	20893.0	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	18.5	44.0	28.5	22.0	113.5	43.0
Merged-chr10-40126110-2	chr10	40125610	40126610	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	B1_Mur3|SINE|Alu	16144.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85051400-2	chr12	85050900	85051900	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347421, intron 15 of 19)	intron (NM_001347421, intron 15 of 19)	44215.0	NM_001361239	73422.0	Mm.311944	NM_175198	ENSMUSG00000042320	Prox2	1700058C01Rik	prospero homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65537306-2	chr9	65536806	65537806	+	649.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42781.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82036669-2	chr11	82036169	82037169	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011333, intron 2 of 2)	intron (NM_011333, intron 2 of 2)	1092.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-38092073-1	chr5	38091573	38092573	+	649.0	f0_balb.idr	intron (NM_001359398, intron 1 of 9)	intron (NM_001359398, intron 1 of 9)	52843.0	NM_026959	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr5-34536747-2	chr5	34536247	34537247	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	-6618.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5010993-2	chr2	5010493	5011493	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027290, intron 1 of 19)	intron (NM_027290, intron 1 of 19)	1351.0	NM_001305259	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	0.0	0.0	1.5	3.5	0.0	0.0
Merged-chr7-46849433-2	chr7	46848933	46849933	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136069, intron 3 of 7)	intron (NM_001136069, intron 3 of 7)	2351.0	NM_001136069	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-6064379-1	chr8	6063879	6064879	+	649.0	f1_balb.idr	Intergenic	Intergenic	-959092.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	4.5	0.0	6.0	0.0	0.0	5.5
Merged-chr2-163601915-3	chr2	163601406	163602406	+	649.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181734)	promoter-TSS (NM_181734)	-408.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111798992-1	chr13	111798492	111799492	+	649.0	f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	10001.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	6.0	13.0	11.0	7.5	4.0	9.0
Merged-chr9-61962653-2	chr9	61962153	61963153	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 6 of 7)	intron (NM_028748, intron 6 of 7)	-15854.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91063330-2	chr2	91062830	91063830	+	649.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026721, exon 8 of 10)	exon (NM_026721, exon 8 of 10)	6985.0	NM_026721	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-86889222-1	chr8	86888722	86889722	+	649.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3964.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	2.0	4.5	1.0	6.0	0.0	6.5
Merged-chr4-5298518-2	chr4	5298018	5299018	+	649.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-333810.0	NR_038183	73872.0	Mm.427301	NR_038183	ENSMUSG00000086066	4930423M02Rik	-	RIKEN cDNA 4930423M02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141472677-2	chr4	141472177	141473177	+	649.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_019763, exon 12 of 16)	exon (NM_019763, exon 12 of 16)	28004.0	NM_009541	22642.0	Mm.389590	NM_009541	ENSMUSG00000006215	Zbtb17	AA589413|Lp-1|Miz1|Zfp100|mZ13	zinc finger and BTB domain containing 17	protein-coding	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr14-70617279-2	chr14	70616795	70617795	+	649.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001252663, exon 4 of 14)	exon (NM_001252663, exon 4 of 14)	1274.0	NM_001252666	13829.0	Mm.210863	NM_013514	ENSMUSG00000022099	Dmtn	AI325486|Epb4.9|Epb49|dematin	dematin actin binding protein	protein-coding	0.0	0.0	1.0	1.5	0.0	5.5
Merged-chr3-147064560-1	chr3	147064060	147065060	+	649.0	f0_balb.idr	Intergenic	Intergenic	212193.0	NM_001302957	70892.0	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75954698-4	chr10	75954203	75955203	+	649.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198635, intron 1 of 13)	intron (NM_198635, intron 1 of 13)	189.0	NM_198635	333669.0	Mm.31077	NM_198635	ENSMUSG00000033255	Gm5134	EG333669	predicted gene 5134	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86710538-2	chr17	86710038	86711038	+	649.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43326.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.0	1.0	1.5	0.0	0.0	0.0
Merged-chr11-75658366-2	chr11	75657866	75658866	+	649.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008659, exon 4 of 32)	exon (NM_008659, exon 4 of 32)	2351.0	NM_001080775	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35271442-1	chr17	35270942	35271942	+	649.0	f1_balb.idr	Intergenic	Intergenic	8319.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	0.0	0.0	0.0	0.0	0.0	3.0
Merged-chr18-90074915-2	chr18	90074415	90075415	+	649.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F3|LINE|L1	-305779.0	NM_001039173	623279.0	Mm.447164	NM_001039173	ENSMUSG00000073514	Dok6	Dok-6	docking protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-36203220-3	chr13	36202717	36203717	+	648.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 1 of 5)	B4A|SINE|B4	85574.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	0.0	1.5	0.5	0.0	0.0	0.0
Merged-chr1-171492098-2	chr1	171491599	171492599	+	648.916626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-11379.0	NM_019484	56009.0	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	0.0	7.5	0.5	1.5	17.0	8.5
Merged-chr13-56151572-2	chr13	56151072	56152072	+	648.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16022.0	NM_001159513	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	1.5	7.5	5.5	3.5	7.0	4.0
Merged-chr15-95825079-2	chr15	95824579	95825579	+	648.916626	f1_balb.idr|f1_c57bl6.idr	intron (NR_155276, intron 1 of 1)	intron (NR_155276, intron 1 of 1)	4993.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92037251-3	chr1	92036748	92037748	+	648.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207225, intron 3 of 26)	intron (NM_207225, intron 3 of 26)	143093.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0.0	25.0	0.0	0.0	0.0	0.0
Merged-chr4-101147678-2	chr4	101147178	101148178	+	648.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_183024, intron 11 of 11)	PB1D9|SINE|Alu	78640.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152093525-2	chr2	152093025	152094025	+	648.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001160410, exon 2 of 2)	exon (NM_001160410, exon 2 of 2)	11996.0	NM_001160410	545474.0	Mm.214317	NM_001160410	ENSMUSG00000060257	Scrt2	AW060659	scratch family zinc finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121696975-2	chr9	121696475	121697475	+	648.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164562, intron 1 of 6)	intron (NM_001164562, intron 1 of 6)	8054.0	NM_178677	215474.0	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-40794127-2	chr17	40793623	40794623	+	648.833374	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009420)	promoter-TSS (NM_009420)	23.0	NM_001204071	22024.0	Mm.1296	NM_009420	ENSMUSG00000023930	Crisp2	CRISP-2|GAPDL5|Tpx-1|Tpx1	cysteine-rich secretory protein 2	protein-coding	0.0	11.0	5.0	0.5	1.0	8.5
Merged-chr9-54547745-4	chr9	54547279	54548279	+	648.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019686, intron 4 of 5)	intron (NM_019686, intron 4 of 5)	8795.0	NM_173778	244885.0	Mm.358924	NM_173778	ENSMUSG00000046460	Sh2d7	4933412E14Rik	SH2 domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63555687-2	chr9	63555187	63556187	+	648.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_030068, intron 5 of 21)	intron (NM_030068, intron 5 of 21)	46806.0	NM_030068	78250.0	Mm.444612	NM_030068	ENSMUSG00000037801	Iqch	4921504K03Rik	IQ motif containing H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30589894-3	chr14	30589402	30590402	+	648.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17753.0	NR_037237	100526475.0		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53086395-2	chr4	53085895	53086895	+	648.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 11 of 49)	intron (NM_013454, intron 11 of 49)	73500.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	1.0	9.5	0.0	5.5	10.5	3.0
Merged-chr15-66903893-2	chr15	66903393	66904393	+	648.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_018865, intron 1 of 4)	intron (NM_018865, intron 1 of 4)	12500.0	NM_018865	22402.0	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139971612-3	chr7	139971118	139972118	+	648.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347613)	TTS (NM_001347613)	7137.0	NM_001347614	381933.0	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129774920-3	chr4	129774424	129775424	+	648.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32621.0	NR_045036	20218.0	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	1.0	4.0	2.5	3.0	0.5	6.0
Merged-chr4-155833384-3	chr4	155832882	155833882	+	648.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025338)	TTS (NM_025338)	2113.0	NM_025338	66077.0	Mm.28999	NM_025338	ENSMUSG00000065990	Aurkaip1	0610033H09Rik|Aip|Akip|MRP-S38	aurora kinase A interacting protein 1	protein-coding	11.0	38.0	11.5	5.0	25.0	16.0
Merged-chr5-100570833-3	chr5	100570355	100571355	+	648.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139198, intron 1 of 4)	intron (NM_139198, intron 1 of 4)	1350.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-33231603-3	chr14	33231088	33232088	+	648.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	14765.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10866623-2	chr19	10866123	10867123	+	648.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_133804, exon 3 of 11)	exon (NM_133804, exon 3 of 11)	3156.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-118304373-2	chr12	118303873	118304873	+	648.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER31B|LTR|ERV1	-2933.0	NM_001166385	20688.0	Mm.34699	NM_009239	ENSMUSG00000025323	Sp4	5730497N03Rik|HF-1b|HF1-b	trans-acting transcription factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32281590-2	chr17	32281090	32282090	+	648.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286630, intron 1 of 19)	B3A|SINE|B2	2533.0	NM_198094	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119780568-2	chr8	119780068	119781068	+	648.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2152.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61488362-2	chr18	61487862	61488862	+	648.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33A|LTR|ERVL	-3755.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-19561428-1	chr8	19560928	19561928	+	648.75	f0_balb.idr	Intergenic	Intergenic	66331.0	NM_139220	246080.0	Mm.207067	NM_139220	ENSMUSG00000037790	Defb7	BD-7|Defb15	defensin beta 7	protein-coding	0.0	0.5	4.0	0.0	9.0	3.0
Merged-chr16-57220884-2	chr16	57220384	57221384	+	648.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 1 of 17)	intron (NM_026254, intron 1 of 17)	10582.0	NM_026254	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27032538-2	chr17	27032038	27033038	+	648.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_027544, intron 2 of 5)	intron (NM_027544, intron 2 of 5)	3279.0	NM_027544	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171610959-1	chr1	171610459	171611459	+	648.666687	f1_c57bl6.idr	Intergenic	Intergenic	-3549.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	3.5	1.5	2.0	1.5	0.0	4.5
Merged-chr11-8595781-2	chr11	8595281	8596281	+	648.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 3 of 30)	intron (NM_001083587, intron 3 of 30)	68754.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35911619-3	chr17	35911134	35912134	+	648.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361453, intron 4 of 5)	intron (NM_001361453, intron 4 of 5)	-1559.0	NM_001357865	73242.0	Mm.273155	NM_028476	ENSMUSG00000024426	Atat1	0610011P08Rik|2610008K08Rik|2610110G12Rik|3110080J08Rik|Mec17|TAT	alpha tubulin acetyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135281210-3	chr3	135280724	135281724	+	648.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172055)	promoter-TSS (NM_001172055)	3.0	NM_027208	69772.0	Mm.45121	NM_027208	ENSMUSG00000028167	Bdh2	1810026B04Rik|Dhrs6	3-hydroxybutyrate dehydrogenase, type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98546001-3	chr11	98545508	98546508	+	648.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011771)	promoter-TSS (NM_011771)	23.0	NM_011771	22780.0	Mm.133367	NM_011771	ENSMUSG00000018168	Ikzf3	5830411O07Rik|Aiolos|Zfpn1a3|Znfn1a3	IKAROS family zinc finger 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7057747-3	chr10	7057251	7058251	+	648.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34566.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	2.0	2.0	2.5	12.5	2.0	2.0
Merged-chr16-11015445-2	chr16	11014945	11015945	+	648.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NR_040518)	TTS (NR_040518)	6547.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56996157-2	chr17	56995657	56996657	+	648.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_017393, exon 6 of 6)	3' UTR (NM_017393, exon 6 of 6)	-1182.0	NM_025538	66400.0	Mm.196150	NM_025538	ENSMUSG00000002661	Alkbh7	2310045B01Rik|2510008E23Rik|Abh7|Spata11	alkB homolog 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103032646-2	chr11	103032146	103033146	+	648.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008707, intron 1 of 11)	RSINE1|SINE|B4	4103.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-96977888-2	chr7	96977402	96978402	+	648.666626	f0_balb.idr|f0_c57.idr	intron (NM_153591, intron 5 of 13)	intron (NM_153591, intron 5 of 13)	26375.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-72211097-2	chr1	72210597	72211597	+	648.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357488, intron 1 of 5)	intron (NM_001357488, intron 1 of 5)	1210.0	NM_001005423	381269.0	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8597878-2	chr17	8597378	8598378	+	648.56665	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290707, intron 1 of 22)	intron (NM_001290707, intron 1 of 22)	71077.0	NM_001290707	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75019686-3	chr15	75019182	75020182	+	648.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-21651.0	NM_010738	110454.0	Mm.425949	NM_010738	ENSMUSG00000075602	Ly6a	Ly-6A.2|Ly-6A/E|Ly-6E.1|Sca-1|Sca1|TAP	lymphocyte antigen 6 complex, locus A	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr17-28907587-2	chr17	28907087	28908087	+	648.549988	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045457)	TTS (NR_045457)	2322.0	NR_045457	74179.0	Mm.248931	NR_045457	ENSMUSG00000085333	1700030A11Rik	-	RIKEN cDNA 1700030A11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-178506872-2	chr2	178506372	178507372	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76357.0	NM_198656	381409.0	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-63138624-2	chr13	63138124	63139124	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 5 of 15)	intron (NM_001289926, intron 5 of 15)	-101405.0	NR_110520	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20729591-2	chr14	20729091	20730091	+	648.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010811, exon 3 of 15)	exon (NM_010811, exon 3 of 15)	4971.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126831132-2	chr4	126830632	126831632	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035525, intron 8 of 23)	ID4_|SINE|ID	77362.0	NM_001035526	100317.0	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52569346-2	chr13	52568846	52569846	+	648.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_046069)	TTS (NR_046069)	3879.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5101655-2	chr11	5101155	5102155	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177370, intron 3 of 8)	intron (NM_177370, intron 3 of 8)	1490.0	NM_001290493	279766.0	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81124006-2	chr10	81123506	81124506	+	648.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347144, exon 11 of 11)	3' UTR (NM_001347144, exon 11 of 11)	-12265.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8771028-1	chr10	8770528	8771528	+	648.5	f0_balb.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	115042.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	1.5	13.5	6.0	1.5	3.5	6.5
Merged-chr3-139673465-2	chr3	139672965	139673965	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198659, intron 12 of 13)	Lx9|LINE|L1	107294.0	NR_153353	102635321.0	Mm.121751	NR_153353	ENSMUSG00000106505	Gm32693	-	predicted gene, 32693	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79219838-2	chr11	79219338	79220338	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	23186.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79994143-2	chr8	79993643	79994643	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020259, intron 7 of 12)	intron (NM_020259, intron 7 of 12)	63865.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50461000-2	chr9	50460500	50461500	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33525.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42134795-2	chr19	42134295	42135295	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-5802.0	NM_027106	69534.0	Mm.30060	NM_027106	ENSMUSG00000018821	Avpi1	2310008N12Rik|AA410041|VIT32|esu|mVIT32	arginine vasopressin-induced 1	protein-coding	0.0	4.5	1.5	0.0	5.0	1.5
Merged-chr6-29214984-2	chr6	29214484	29215484	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302933, intron 1 of 14)	intron (NM_001302933, intron 1 of 14)	1380.0	NM_001302933	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-26236282-2	chr13	26235782	26236782	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A|LTR|ERVK	76124.0	NR_045933	73576.0	Mm.45473	NR_045933	ENSMUSG00000084811	1700092E19Rik	-	RIKEN cDNA 1700092E19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5712511-2	chr13	5712011	5713011	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	145581.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94829983-2	chr10	94829483	94830483	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 20 of 30)	intron (NM_018797, intron 20 of 30)	114595.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139400012-2	chr7	139399512	139400512	+	648.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355162)	promoter-TSS (NM_001355162)	-482.0	NM_001355162	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29918795-2	chr2	29918295	29919295	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355137, intron 14 of 16)	intron (NM_001355137, intron 14 of 16)	-16614.0	NM_028923	74412.0	Mm.275121	NM_028923	ENSMUSG00000019715	Gle1	4933405K21Rik|AA553313|Gle1l	GLE1 RNA export mediator (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165641266-2	chr1	165640766	165641766	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6725.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55238045-2	chr19	55237545	55238545	+	648.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081076, exon 2 of 21)	exon (NM_001081076, exon 2 of 21)	3191.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-57019759-2	chr13	57019253	57020253	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-123964.0	NM_001302373	26946.0	Mm.62409	NM_012035	ENSMUSG00000021541	Trpc7	TRP7|Trrp8	transient receptor potential cation channel, subfamily C, member 7	protein-coding	0.0	2.5	0.0	0.0	10.5	0.0
Merged-chr3-126627631-2	chr3	126627131	126628131	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	30680.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	0.0	9.5	14.0	0.0	9.0	4.0
Merged-chr2-21183591-2	chr2	21183091	21184091	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027728, intron 4 of 4)	intron (NM_027728, intron 4 of 4)	21774.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136169639-2	chr5	136169139	136170139	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178751, intron 1 of 2)	PB1D10|SINE|Alu	1017.0	NM_178751	269717.0	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87711355-2	chr1	87710855	87711855	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 22 of 26)	intron (NM_001110192, intron 22 of 26)	-44656.0	NM_029846	77040.0	Mm.272972	NM_029846	ENSMUSG00000026289	Atg16l1	1500009K01Rik|Apg16l|Atg16l|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77813788-3	chr18	77813260	77814260	+	648.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 1 of 14)	intron (NM_013831, intron 1 of 14)	-17370.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158140552-2	chr2	158140052	158141052	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 2 of 12)	intron (NM_009373, intron 2 of 12)	5840.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53454430-2	chr11	53453930	53454930	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-2775.0	NM_001290789	71774.0	Mm.274370	NM_027917	ENSMUSG00000018387	Shroom1	Apx|Shrm1	shroom family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88337985-2	chr10	88337485	88338485	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 3 of 6)	intron (NM_027878, intron 3 of 6)	19090.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119633614-2	chr4	119633114	119634114	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4118.0	NM_008190	14915.0	Mm.2614	NM_008190	ENSMUSG00000023247	Guca2a	Guca2	guanylate cyclase activator 2a (guanylin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118743092-2	chr2	118742592	118743592	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-2666.0	NM_001301269	100043272.0	Mm.398072	NM_001301269	ENSMUSG00000074918	Inafm2	5430417L22Rik	InaF motif containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114799925-2	chr11	114799425	114800425	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181749, intron 1 of 2)	B2_Mm2|SINE|B2	1001.0	NM_181749	217302.0	Mm.269127	NM_181749	ENSMUSG00000034677	Gpr142	PGR2	G protein-coupled receptor 142	protein-coding	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr7-6124638-2	chr7	6124138	6125138	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31333.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126043134-2	chr4	126042634	126043634	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252651, intron 14 of 14)	intron (NM_001252651, intron 14 of 14)	-3794.0	NM_025544	66407.0	Mm.195628	NM_025544	ENSMUSG00000028861	Mrps15	1500003E24Rik|2410002B11Rik|Mprs15	mitochondrial ribosomal protein S15	protein-coding	0.5	0.0	1.0	0.0	0.0	2.0
Merged-chr2-45018630-2	chr2	45018130	45019130	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 3 of 9)	intron (NM_001355291, intron 3 of 9)	4547.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21614775-2	chr9	21614275	21615275	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1199.0	NR_035496	100316714.0		NR_035496	ENSMUSG00000088478	Mir1946b	mmu-mir-1946b	microRNA 1946b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5342484-2	chr17	5341984	5342984	+	648.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001085355, exon 20 of 20)	exon (NM_001085355, exon 20 of 20)	76283.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16162815-2	chr1	16162343	16163343	+	648.5	f0_balb.idr|f1_balb.idr	Intergenic	Lx4A|LINE|L1	56961.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95905828-2	chr15	95905328	95906328	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 3 of 19)	intron (NM_175344, intron 3 of 19)	-75756.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59762713-2	chr9	59762213	59763213	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173018, intron 1 of 43)	B1_Mur4|SINE|Alu	11539.0	NM_173018	270163.0	Mm.249545	NM_173018	ENSMUSG00000039585	Myo9a	4732465J09Rik|C130068I12Rik|C230003M11	myosin IXa	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131757728-2	chr2	131757228	131758228	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME2|LINE|L1	89928.0	NR_029381	414081.0	Mm.246905	NR_029381	ENSMUSG00000086822	5330413P13Rik	-	RIKEN cDNA 5330413P13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74305828-2	chr1	74305328	74306328	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039509, intron 2 of 9)	B1_Mur1|SINE|Alu	-1492.0	NM_027154	69660.0	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45785107-2	chr19	45784607	45785607	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-1554.0	NM_023799	76055.0	Mm.122725	NM_023799	ENSMUSG00000025220	Mgea5	Hy5|Ncoat|OGA	meningioma expressed antigen 5 (hyaluronidase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-161214815-2	chr2	161214315	161215315	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105729.0	NR_126509	71389.0	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	3.5	2.5	2.0	2.5	0.0	0.0
Merged-chr7-70362029-2	chr7	70361529	70362529	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183261, intron 1 of 2)	intron (NM_183261, intron 1 of 2)	-1436.0	NM_009697	11819.0	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84770532-2	chr12	84770032	84771032	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 1 of 3)	intron (NM_023409, intron 1 of 3)	2580.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37398985-2	chr10	37398485	37399485	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-260059.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120525887-2	chr5	120525387	120526387	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 11 of 13)	intron (NM_001177595, intron 11 of 13)	14695.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45746638-3	chr19	45746177	45747177	+	648.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2886.0	NM_008723	18150.0	Mm.1406	NM_008723	ENSMUSG00000056209	Npm3	Nub1	nucleoplasmin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131083130-2	chr2	131082662	131083662	+	648.5	f0_balb.idr|f1_balb.idr	intron (NM_011426, intron 5 of 20)	intron (NM_011426, intron 5 of 20)	3603.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	16.5	10.5	7.0	15.5	16.0	18.0
Merged-chr6-128406369-2	chr6	128405869	128406869	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162858, intron 2 of 5)	intron (NM_001162858, intron 2 of 5)	6603.0	NM_001162858	60345.0	Mm.269883	NM_021717	ENSMUSG00000001520	Nrip2	AW491344|NIX1	nuclear receptor interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45560867-2	chr7	45560367	45561367	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025330, intron 5 of 8)	intron (NM_025330, intron 5 of 8)	5939.0	NM_025330	66065.0	Mm.285710	NM_025330	ENSMUSG00000030825	Hsd17b14	0610039E24Rik|Dhrs10|retSDR3	hydroxysteroid (17-beta) dehydrogenase 14	protein-coding	0.0	2.5	0.0	0.0	0.5	0.0
Merged-chr5-105157777-2	chr5	105157277	105158277	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18191.0	NM_001359080	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-8638345-2	chr16	8637845	8638845	+	648.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025708)	promoter-TSS (NM_025708)	638.0	NM_016881	54128.0	Mm.9699	NM_016881	ENSMUSG00000022711	Pmm2	AI585868|C86848	phosphomannomutase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66363021-2	chr5	66362521	66363521	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310626, intron 9 of 15)	intron (NM_001310626, intron 9 of 15)	-25356.0	NM_001201416	11787.0	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4941365-2	chr16	4940865	4941865	+	648.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025839)	TTS (NM_025839)	-1780.0	NR_037666	100503704.0	Mm.480572	NR_037666	ENSMUSG00000097397	Gm16861	-	predicted gene, 16861	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76293243-2	chr15	76292743	76293743	+	648.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028852)	TTS (NM_028852)	-1191.0	NM_001195537	100503915.0	Mm.393455	NM_001195537	ENSMUSG00000071724	Smpd5	Gm10345|MA-nSMase	sphingomyelin phosphodiesterase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99933118-2	chr10	99932618	99933618	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82703.0	NM_001347156	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124553429-2	chr5	124552929	124553929	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190795, intron 1 of 13)	intron (NM_001190795, intron 1 of 13)	565.0	NM_026409	67848.0	Mm.281601	NM_026409	ENSMUSG00000029389	Ddx55	2810021H22Rik|mKIAA1595	DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	protein-coding	0.0	0.0	3.5	1.0	1.5	4.0
Merged-chr1-89819808-2	chr1	89819308	89820308	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 12 of 16)	intron (NM_001037136, intron 12 of 16)	111368.0	NM_010262	14472.0	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47785964-2	chr17	47785464	47786464	+	648.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011549, exon 1 of 8)	exon (NM_011549, exon 1 of 8)	220.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94055126-3	chr10	94054625	94055625	+	648.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 2 of 20)	intron (NM_053072, intron 2 of 20)	19124.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	7.5	6.0	16.5	1.0	5.0	4.0
Merged-chr17-34958201-3	chr17	34957694	34958694	+	648.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010478, exon 1 of 1)	exon (NM_010478, exon 1 of 1)	1044.0	NM_010478	15511.0	Mm.372314	NM_010478	ENSMUSG00000090877	Hspa1b	Hsp70|Hsp70-1|Hsp70.1|hsp68	heat shock protein 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-94236865-3	chr9	94236359	94237359	+	648.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	301222.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43276318-3	chr7	43275807	43276807	+	648.43335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31M|LTR|ERVK	36993.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45008300-2	chr13	45007797	45008797	+	648.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6201.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.0	1.5	3.0	0.5	0.0	0.0
Merged-chr11-100546445-2	chr11	100545945	100546945	+	648.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028918, intron 1 of 11)	B3|SINE|B2	813.0	NM_028918	74407.0	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124711306-2	chr6	124710806	124711806	+	648.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007531)	promoter-TSS (NM_007531)	872.0	NM_013536	14791.0	Mm.6390	NM_013536	ENSMUSG00000004268	Emg1	C2f|Grcc2f	EMG1 N1-specific pseudouridine methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77346693-3	chr11	77346189	77347189	+	648.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 2 of 14)	intron (NM_177710, intron 2 of 14)	-1591.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-75342166-3	chr13	75341658	75342658	+	648.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	252301.0	NM_013628	18548.0	Mm.1333	NM_013628	ENSMUSG00000021587	Pcsk1	Nec-1|Nec1|PC1|PC3|Phpp-1|SPC3	proprotein convertase subtilisin/kexin type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108650498-2	chr9	108649998	108650998	+	648.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357285, intron 1 of 15)	B3|SINE|B2	-1090.0	NM_001357286	23807.0	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8721879-2	chr19	8721379	8722379	+	648.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161413, intron 1 of 9)	B1_Mm|SINE|Alu	1490.0	NM_001161413	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19291749-3	chr10	19291244	19292244	+	648.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64795.0	NM_053008	94222.0	Mm.156946	NM_053008	ENSMUSG00000045591	Olig3	Bhlhb7|bHLHe20|oligo3	oligodendrocyte transcription factor 3	protein-coding	2.0	0.0	12.0	13.5	11.0	9.0
Merged-chr13-91990919-3	chr13	91990399	91991399	+	648.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2857.0	NM_009027	19418.0	Mm.248630	NM_009027	ENSMUSG00000021708	Rasgrf2	6330417G04Rik|AW048350|Grf2|Ras-GRF2	RAS protein-specific guanine nucleotide-releasing factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34143718-2	chr8	34143218	34144218	+	648.266663	f1_balb.idr|f1_c57bl6.idr	intron (NM_026609, intron 1 of 3)	intron (NM_026609, intron 1 of 3)	3021.0	NM_026609	68192.0	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	26.0	21.5	25.5	23.5	14.5	15.5
Merged-chr17-5594351-2	chr17	5593851	5594851	+	648.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	101751.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4217221-2	chr12	4216721	4217721	+	648.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_134046, exon 4 of 7)	exon (NM_134046, exon 4 of 7)	16744.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-31128216-2	chr7	31127679	31128679	+	648.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1156.0	NM_011322	20266.0	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	0.0	11.0	0.0	0.0	2.0	6.5
Merged-chr14-13962433-2	chr14	13961931	13962931	+	648.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359901)	promoter-TSS (NM_001359901)	-579.0	NM_001359901	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	4.5	10.5	8.0	17.0	26.0	5.5
Merged-chr1-34803337-2	chr1	34802837	34803837	+	648.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_183019, intron 1 of 9)	intron (NM_183019, intron 1 of 9)	1615.0	NM_183019	226970.0	Mm.41604	NM_183019	ENSMUSG00000037509	Arhgef4	9330140K16Rik|Asef	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35429163-4	chr8	35428583	35429583	+	648.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53342.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	13.0	3.5	8.5	2.0	3.0	3.5
Merged-chr1-44042358-4	chr1	44041839	44042839	+	648.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-22333.0	NM_001013799	433294.0	Mm.123621	NM_001013799	ENSMUSG00000047343	Mettl21c	A530098C11Rik	methyltransferase like 21C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-97778829-3	chr16	97778331	97779331	+	648.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15076.0	NM_023663	72388.0	Mm.35290	NM_023663	ENSMUSG00000005251	Ripk4	2310069J12Rik|AI552420|ANKK2|Ankrd3|DIk|PKK|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding	4.5	2.5	4.0	0.5	2.5	1.5
Merged-chr11-119729500-3	chr11	119728989	119729989	+	648.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028898, intron 4 of 33)	intron (NM_028898, intron 4 of 33)	104876.0	NR_045313	319454.0	Mm.442144	NR_045312	ENSMUSG00000085081	Rptoros	A430071A18Rik	regulatory associated protein of MTOR, complex 1, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-31228089-3	chr13	31227592	31228592	+	648.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045957, intron 1 of 2)	intron (NR_045957, intron 1 of 2)	12994.0	NR_045957	73924.0	Mm.417825	NR_045957	ENSMUSG00000087460	4930401O12Rik	-	RIKEN cDNA 4930401O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124635346-2	chr5	124634846	124635846	+	648.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011596, intron 2 of 19)	B3A|SINE|B2	6294.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94928718-2	chr10	94928218	94929218	+	648.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 1 of 30)	intron (NM_018797, intron 1 of 30)	15860.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114670807-2	chr11	114670307	114671307	+	648.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048058, intron 2 of 3)	ID_B1|SINE|B4	2026.0	NM_001048058	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93279294-2	chr10	93278795	93279795	+	648.166626	f0_balb.idr|f1_balb.idr	intron (NM_001322265, intron 2 of 4)	intron (NM_001322265, intron 2 of 4)	31864.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	0.0	2.0	2.5	9.0	14.5	6.0
Merged-chr10-10397057-3	chr10	10396533	10397533	+	648.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 20 of 36)	intron (NM_001127353, intron 20 of 36)	75281.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73463508-2	chr15	73463008	73464008	+	648.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40317.0	NM_001358045	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64862086-2	chr5	64861586	64862586	+	648.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58563.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70671640-2	chr8	70671140	70672140	+	648.083313	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1591.0	NM_001359042	50783.0	Mm.248188	NM_015816	ENSMUSG00000031848	Lsm4	-	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	2.5	4.5	2.5	14.5	7.5	0.0
Merged-chr9-40531360-1	chr9	40530860	40531860	+	648.0	f0_balb.idr	promoter-TSS (NM_001357617)	promoter-TSS (NM_001357617)	23.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	1.0	0.0	5.5	0.0	0.0	2.0
Merged-chr1-91091715-1	chr1	91091215	91092215	+	648.0	f0_balb.idr	intron (NM_008515, intron 9 of 22)	intron (NM_008515, intron 9 of 22)	38271.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58935649-2	chr15	58935149	58936149	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023172, intron 1 of 3)	AT_rich|Low_complexity|Low_complexity	1839.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-127340311-2	chr1	127339811	127340811	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 4 of 17)	MTEb|LTR|ERVL-MaLR	135325.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-68765302-2	chr16	68764802	68765802	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1035079.0	NR_130991	78110.0	Mm.211406	NR_130991	ENSMUSG00000107073	4930428D20Rik	Gm43265	RIKEN cDNA 4930428D20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-31719592-1	chr11	31719092	31720092	+	648.0	f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-47730.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	1.0	2.5	14.5	0.0	5.5	3.0
Merged-chr13-101840567-2	chr13	101840067	101841067	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72350.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128805410-2	chr4	128804910	128805910	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081098, intron 1 of 8)	intron (NM_001081098, intron 1 of 8)	702.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	10.5	24.0	19.5	5.0	20.0	20.0
Merged-chr7-79794516-2	chr7	79794016	79795016	+	648.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008588)	promoter-TSS (NM_008588)	-926.0	NM_008588	17292.0	Mm.1404	NM_008588	ENSMUSG00000030544	Mesp1	bHLHc5	mesoderm posterior 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-78208753-2	chr16	78208253	78209253	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	46701.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6962543-2	chr17	6962043	6963043	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1387.0	NM_147155	380608.0	Mm.371734	NM_147155	ENSMUSG00000052031	Tagap1	2610315E15Rik|AA415005|FKSG15	T cell activation GTPase activating protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-31675318-2	chr11	31674817	31675817	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3455.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	0.0	3.5	1.5	0.0	2.0	7.5
Merged-chr15-103341882-2	chr15	103341382	103342382	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1796.0	NM_013866	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-79104811-2	chr6	79104311	79105311	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	72769.0	NR_040301	100504701.0	Mm.400420	NR_040301	ENSMUSG00000108072	Gm20362	-	predicted gene, 20362	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30292169-2	chr7	30291548	30292548	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360764, intron 1 of 13)	intron (NM_001360764, intron 1 of 13)	353.0	NM_001360764	76686.0	Mm.159258	NM_001081114	ENSMUSG00000013921	Clip3	1500005P14Rik|AI844915|Clipr-59	CAP-GLY domain containing linker protein 3	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr8-71403574-1	chr8	71403074	71404074	+	648.0	f1_balb.idr	intron (NM_026636, intron 8 of 8)	intron (NM_026636, intron 8 of 8)	-2438.0	NM_001310502	234396.0	Mm.216549	NM_172756	ENSMUSG00000046295	Ankle1	8430438L13Rik|Ankrd41|C430003I23|Lem3	ankyrin repeat and LEM domain containing 1	protein-coding	21.0	11.5	14.0	6.0	6.0	0.5
Merged-chr5-67553051-2	chr5	67552551	67553551	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-54832.0	NM_001033415	330096.0	Mm.442747	NM_001033415	ENSMUSG00000050010	Shisa3	D830007B15Rik	shisa family member 3	protein-coding	0.5	0.0	5.0	4.0	0.0	0.0
Merged-chr11-78820777-2	chr11	78820277	78821277	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5818.0	NM_001076681	66274.0	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128142435-2	chr6	128141935	128142935	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175414, intron 1 of 8)	Tigger19a|DNA|TcMar-Tigger	1143.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	1.5	0.5	2.0	0.0	1.5	1.0
Merged-chr16-71468410-2	chr16	71467910	71468910	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	218506.0	NR_040576	78221.0	Mm.399298	NR_040576		4930567J20Rik	-	RIKEN cDNA 4930567J20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-33356964-3	chr15	33356459	33357459	+	648.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176073, intron 4 of 7)	intron (NM_176073, intron 4 of 7)	48980.0	NR_033608	73486.0	Mm.483393	NM_028551	ENSMUSG00000058101	1700084J12Rik	-	ribosomal protein L7-like 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-44100944-2	chr1	44100444	44101444	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356297, intron 1 of 5)	intron (NM_001356297, intron 1 of 5)	1497.0	NM_029368	75623.0	Mm.348017	NM_029368	ENSMUSG00000026049	Tex30	1700029F09Rik|3110030D08Rik	testis expressed 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23557164-2	chr13	23556664	23557664	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	2132.0	NM_145713	14957.0	Mm.247046	NM_145713	ENSMUSG00000052565	Hist1h1d	H1.3|H1D|H1f3|H1s-4	histone cluster 1, H1d	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27262840-2	chr2	27262340	27263340	+	648.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_133905, exon 30 of 30)	non-coding (NR_133905, exon 30 of 30)	-15537.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11687674-2	chr2	11687174	11688174	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008367, intron 7 of 7)	intron (NM_008367, intron 7 of 7)	-17619.0	NM_001271498	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61681885-2	chr10	61681385	61682385	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009120, intron 1 of 6)	B2_Mm2|SINE|B2	-1595.0	NR_126477	75539.0		NR_126477		1700022H01Rik	-	RIKEN cDNA 1700022H01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-71143365-1	chr14	71142865	71143865	+	648.0	f1_balb.idr	Intergenic	L1MD1|LINE|L1	-107908.0	NR_046075	100043132.0	Mm.399336	NR_046075	ENSMUSG00000115139	Gm4251	-	predicted gene 4251	ncRNA	1.5	0.0	3.5	0.0	1.5	4.5
Merged-chr14-69090071-2	chr14	69089571	69090571	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	60782.0	NM_009285	20855.0	Mm.20911	NM_009285	ENSMUSG00000014813	Stc1	Stc	stanniocalcin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36233818-2	chr17	36233318	36234318	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR10D|LTR|ERVK	24028.0	NM_026308	67676.0	Mm.27131	NM_026308	ENSMUSG00000024446	Rpp21	0610037N01Rik	ribonuclease P 21 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-31618591-2	chr13	31618091	31619091	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7225.0	NM_010225	14238.0	Mm.125548	NM_010225	ENSMUSG00000038402	Foxf2	FREAC2|Fkh20|LUN	forkhead box F2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39173216-2	chr10	39172716	39173716	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9422.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94549163-2	chr8	94548678	94549678	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153507, intron 2 of 15)	intron (NM_153507, intron 2 of 15)	16150.0	NM_153507	234577.0	Mm.291815	NM_153507	ENSMUSG00000034361	Cpne2	3322401K10Rik	copine II	protein-coding	13.0	20.5	24.0	35.0	24.0	25.0
Merged-chr2-32530630-2	chr2	32530123	32531123	+	648.0	f0_balb.idr|f0_c57.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4736.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118675291-2	chr14	118674791	118675791	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163676, intron 1 of 29)	ID_B1|SINE|B4	1640.0	NM_001163675	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73369164-2	chr14	73368664	73369664	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008410, intron 1 of 5)	intron (NM_008410, intron 1 of 5)	16125.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66150150-1	chr5	66149650	66150650	+	648.0	f0_c57.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	828.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	92.5	179.5	117.5	67.0	176.5	119.5
Merged-chr7-99086037-2	chr7	99085537	99086537	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 5 of 14)	intron (NM_178635, intron 5 of 14)	55107.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	1.5	0.5	2.0	0.0	1.0	2.0
Merged-chr11-116641937-2	chr11	116641437	116642437	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12376.0	NM_030206	114886.0	Mm.34598	NM_030206	ENSMUSG00000020810	Cygb	3110001K20Rik|HGb|Staap	cytoglobin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-75323559-2	chr4	75323059	75324059	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-45267.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84925061-2	chr15	84924561	84925561	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016714, intron 1 of 7)	intron (NM_016714, intron 1 of 7)	1633.0	NM_016714	18141.0	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3371238-2	chr19	3370738	3371738	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 11 of 18)	intron (NM_013495, intron 11 of 18)	-17619.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105824114-2	chr5	105823614	105824614	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-52454.0	NR_030777	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	0.0	11.5	0.0	0.0	0.0	0.0
Merged-chr8-54137875-2	chr8	54137375	54138375	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009506, intron 1 of 6)	intron (NM_009506, intron 1 of 6)	60343.0	NM_009506	22341.0	Mm.1402	NM_009506	ENSMUSG00000031520	Vegfc	AW228853|VEGF-C	vascular endothelial growth factor C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38356143-2	chr18	38355643	38356643	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17150.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101298524-3	chr4	101297980	101298980	+	648.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-33198.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-41739068-2	chr2	41738568	41739568	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053011, intron 5 of 90)	ORR1A2|LTR|ERVL-MaLR	708500.0	NR_105754	102465171.0		NR_105754	ENSMUSG00000098660	Mir6336	Gm27584|mmu-mir-6336	microRNA 6336	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92334555-2	chr5	92334006	92335006	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	B1_Mur3|SINE|Alu	2679.0	NM_001310664	109979.0	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	0.0	0.0	0.0	0.5	1.5	1.0
Merged-chr19-41278405-2	chr19	41277905	41278905	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 16 of 16)	intron (NM_031376, intron 16 of 16)	-14401.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119801213-2	chr2	119800685	119801685	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019392, intron 1 of 18)	intron (NM_019392, intron 1 of 18)	1671.0	NM_019392	22174.0	Mm.2901	NM_019392	ENSMUSG00000027298	Tyro3	AI323366|Brt|Dtk|Etk-2|Rse|Sky|TK19-2|Tif|etk2/tyro3|tk19-1	TYRO3 protein tyrosine kinase 3	protein-coding	3.0	1.5	0.0	1.5	0.0	0.0
Merged-chr12-32912939-3	chr12	32912441	32913441	+	648.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	40848.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	7.5	0.0	0.0	0.5	0.0	0.5
Merged-chr1-118499818-2	chr1	118499318	118500318	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359330, intron 10 of 39)	B3A|SINE|B2	-40553.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	0.0	4.0	0.0	0.0	0.0	0.0
Merged-chr16-94720638-1	chr16	94720138	94721138	+	648.0	f0_balb.idr	Intergenic	Lx7|LINE|L1	109219.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-10089777-3	chr1	10089264	10090264	+	648.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026493, intron 14 of 29)	B4|SINE|B4	51546.0	NM_026493	211660.0	Mm.244046	NM_026493	ENSMUSG00000056763	Cspp1	2310020J12Rik|4930413O22Rik|AA387550|BC055915|Cspp2|Cspp3	centrosome and spindle pole associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32677687-1	chr4	32677187	32678187	+	648.0	f1_balb.idr	intron (NM_001081392, intron 13 of 101)	intron (NM_001081392, intron 13 of 101)	20568.0	NM_001081392	100019.0	Mm.24627	NM_133874	ENSMUSG00000058006	Mdn1	4833432B22Rik|A130070M06|AA958993|D4Abb1e|Gm135	midasin AAA ATPase 1	protein-coding	0.0	0.5	1.5	0.0	0.0	0.0
Merged-chr1-69688875-2	chr1	69688375	69689375	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2915.0	NM_011770	22779.0	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121581400-2	chr8	121580900	121581900	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2594.0	NM_133765	76454.0	Mm.24829	NM_133765	ENSMUSG00000052934	Fbxo31	1110003O08Rik|2310046N15Rik|Fbx14|Fbxo14	F-box protein 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132879599-2	chr2	132879099	132880099	+	648.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177303, exon 2 of 5)	exon (NM_177303, exon 2 of 5)	1263.0	NM_177303	320974.0	Mm.357342	NM_177303	ENSMUSG00000043110	Lrrn4	B430119L13Rik|Nlrr4	leucine rich repeat neuronal 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-144292101-2	chr1	144291601	144292601	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_T|LINE|L1	-42997.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12940223-2	chr17	12939723	12940723	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153151, intron 1 of 8)	intron (NM_153151, intron 1 of 8)	173.0	NM_153151	224530.0	Mm.490312	NM_153151	ENSMUSG00000062480	Acat3	ACTL	acetyl-Coenzyme A acetyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-92120515-1	chr14	92120015	92121015	+	648.0	f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	1770154.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	3.5	0.5	1.0	2.0	0.0	5.0
Merged-chr11-64493683-1	chr11	64493183	64494183	+	648.0	f1_c57bl6.idr	intron (NM_178870, intron 1 of 1)	intron (NM_178870, intron 1 of 1)	-57009.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	0.0	4.0	6.5	11.5	4.0	6.5
Merged-chr3-157636917-2	chr3	157636417	157637417	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011196, intron 2 of 2)	intron (NM_011196, intron 2 of 2)	70025.0	NM_011196	19218.0	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155514860-2	chr2	155514357	155515357	+	648.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_144786)	promoter-TSS (NM_144786)	-11.0	NM_144786	207182.0	Mm.41757	NM_144786	ENSMUSG00000027603	Ggt7	1110017C11Rik|6330563L03Rik|Ggtl3	gamma-glutamyltransferase 7	protein-coding	0.0	0.0	1.0	0.0	4.5	0.0
Merged-chr1-40354788-3	chr1	40354281	40355281	+	647.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356478, intron 8 of 10)	intron (NM_001356478, intron 8 of 10)	30192.0	NM_133193	107527.0	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-4770003-4	chr1	4769488	4770488	+	647.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15738.0	NM_001177658	27395.0	Mm.182927	NM_025300	ENSMUSG00000033845	Mrpl15	HSPC145|MRP-L7|Rpml7	mitochondrial ribosomal protein L15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165650758-2	chr1	165650258	165651258	+	647.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 5 of 5)	intron (NM_001038846, intron 5 of 5)	-16217.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135584017-2	chr7	135583517	135584517	+	647.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316678, intron 1 of 19)	intron (NM_001316678, intron 1 of 19)	-9464.0	NM_001316680	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44004408-2	chr7	44003909	44004909	+	647.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8269.0	NM_010644	16618.0	Mm.439663	NM_010644	ENSMUSG00000053719	Klk1b26	Egfbp2|Klk26|PRECE-2|mGK-26|mGK26	kallikrein 1-related petidase b26	protein-coding	4.5	16.0	7.5	12.5	26.0	16.5
Merged-chr1-151701482-2	chr1	151700982	151701982	+	647.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 9 of 13)	intron (NM_022018, intron 9 of 13)	53245.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34382899-3	chr19	34382435	34383435	+	647.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92200.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	3.0	1.5	1.0	2.5	2.0	1.0
Merged-chr8-94814499-2	chr8	94813999	94814999	+	647.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	4046.0	NM_011332	20295.0	Mm.41988	NM_011332	ENSMUSG00000031780	Ccl17	Abcd-2|Scya17|Scya17l|Tarc	chemokine (C-C motif) ligand 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52488934-2	chr6	52488434	52489434	+	647.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3517.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-188980273-2	chr1	188979792	188980792	+	647.75	f0_balb.idr|f0_c57.idr	intron (NR_153196, intron 13 of 17)	intron (NR_153196, intron 13 of 17)	27548.0	NM_001359577	226823.0	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116125856-2	chr3	116125397	116126397	+	647.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011693, intron 3 of 8)	intron (NM_011693, intron 3 of 8)	3791.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	49.0	32.5	22.5	16.0	49.5	23.5
Merged-chr15-84925730-2	chr15	84925230	84926230	+	647.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_016714, intron 1 of 7)	(TC)n|Simple_repeat|Simple_repeat	2302.0	NM_016714	18141.0	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-133101590-2	chr1	133101090	133102090	+	647.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001099276, intron 28 of 32)	intron (NM_001099276, intron 28 of 32)	-29576.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0.5	0.5	3.0	0.5	2.0	0.0
Merged-chr2-109918760-3	chr2	109918262	109919262	+	647.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172671, intron 1 of 17)	intron (NM_172671, intron 1 of 17)	1115.0	NM_172671	107515.0	Mm.277351	NM_172671	ENSMUSG00000050199	Lgr4	9130225G07|A330106J01Rik|A930009A08Rik|Gpr48	leucine-rich repeat-containing G protein-coupled receptor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-37002688-3	chr17	37002222	37003222	+	647.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033137)	promoter-TSS (NR_033137)	197.0	NM_001013745	22715.0	Mm.305561	NM_009559	ENSMUSG00000036036	Zfp57	G19|Zfp-57	zinc finger protein 57	protein-coding	2.5	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115252387-1	chr11	115251887	115252887	+	647.666687	f1_balb.idr	intron (NM_010350, intron 13 of 14)	intron (NM_010350, intron 13 of 14)	14856.0	NM_010350	14813.0	Mm.39090	NM_010350	ENSMUSG00000020734	Grin2c	GluN2C|NMDAR2C|NR2C	glutamate receptor, ionotropic, NMDA2C (epsilon 3)	protein-coding	4.0	1.0	5.0	7.5	11.5	0.0
Merged-chr2-181595185-2	chr2	181594685	181595685	+	647.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172676)	TTS (NM_172676)	-2724.0	NM_001164597	269401.0	Mm.386888	NM_001164597	ENSMUSG00000000823	Zfp512b	Gm632|Znf512b	zinc finger protein 512B	protein-coding	0.5	0.0	0.0	0.5	0.0	0.0
Merged-chr9-62373233-2	chr9	62372731	62373731	+	647.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 3 of 6)	intron (NM_009672, intron 3 of 6)	31888.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32179670-4	chr16	32179148	32180148	+	647.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033539)	promoter-TSS (NM_001033539)	-152.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr4-124986702-2	chr4	124986202	124987202	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138683, intron 1 of 5)	CpG	272.0	NM_138683	192199.0	Mm.42202	NM_138683	ENSMUSG00000028871	Rspo1	R-spondin|Rspondin	R-spondin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-145208148-2	chr5	145207648	145208648	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359192, intron 2 of 3)	intron (NM_001359192, intron 2 of 3)	3589.0	NM_001359188	22757.0	Mm.332842	NM_016683	ENSMUSG00000055991	Zkscan5	AI132486|AI326970|Zfp95|hKraba1	zinc finger with KRAB and SCAN domains 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-51971702-2	chr2	51971202	51972202	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019401, intron 1 of 7)	intron (NM_019401, intron 1 of 7)	1506.0	NM_001141949	64685.0	Mm.7491	NM_019401	ENSMUSG00000026946	Nmi	-	N-myc (and STAT) interactor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-115582646-2	chr3	115582146	115583146	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	132409.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77619300-2	chr10	77618800	77619800	+	647.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_125904)	TTS (NR_125904)	-3021.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88744525-2	chr15	88744025	88745025	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-7186.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59259660-2	chr4	59259160	59260160	+	647.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105031)	promoter-TSS (NR_105031)	-391.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	14.0	4.5	18.5	1.5	7.5	8.0
Merged-chr11-103333460-2	chr11	103332960	103333960	+	647.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133715, exon 14 of 16)	exon (NM_133715, exon 14 of 16)	11242.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21050491-2	chr5	21049991	21050991	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011203, intron 1 of 17)	L2|LINE|L2	5420.0	NM_001356591	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-80935812-2	chr13	80935312	80936312	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4591.0	NR_103550	71416.0	Mm.415500	NR_103550		5430425K12Rik	-	RIKEN cDNA 5430425K12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5499711-2	chr6	5499211	5500211	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3433.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132076518-2	chr4	132076018	132077018	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1205.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106420857-2	chr9	106420423	106421423	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8488.0	NM_001324533	19944.0	Mm.288696	NM_009082	ENSMUSG00000048758	Rpl29	Rpl43	ribosomal protein L29	protein-coding	0.0	2.5	6.0	3.0	11.0	7.5
Merged-chr16-10878802-2	chr16	10878302	10879302	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35995.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20371607-2	chr14	20371107	20372107	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024512, intron 7 of 13)	MTD|LTR|ERVL-MaLR	17303.0	NM_134081	108671.0	Mm.2871	NM_134081	ENSMUSG00000021811	Dnajc9	5330419I01Rik|AU020082	DnaJ heat shock protein family (Hsp40) member C9	protein-coding	5.5	4.5	3.5	1.0	3.5	8.5
Merged-chr10-39730344-2	chr10	39729844	39730844	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_038037, intron 1 of 2)	intron (NR_038037, intron 1 of 2)	1663.0	NR_038037	327744.0	Mm.295265	NM_183198	ENSMUSG00000087177	E130307A14Rik	-	RIKEN cDNA E130307A14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-97522827-2	chr13	97522327	97523327	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER97b|DNA|hAT-Tip100	-37173.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87126264-2	chr6	87125761	87126761	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21515.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	0.0	1.0	2.0	0.0	0.0	0.0
Merged-chr3-108655984-2	chr3	108655484	108656484	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177771, intron 2 of 12)	B2_Mm2|SINE|B2	2044.0	NM_001177770	229725.0	Mm.214545	NM_145543	ENSMUSG00000027884	Clcc1	Mclc	chloride channel CLIC-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78445518-2	chr10	78445018	78446018	+	647.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105873)	promoter-TSS (NR_105873)	-361.0	NR_105873	102466762.0		NR_105873	ENSMUSG00000098279	Mir6908	Gm27827|mmu-mir-6908	microRNA 6908	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23707718-2	chr17	23707218	23708218	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18618.0	NM_023058	268930.0	Mm.182193	NM_023058	ENSMUSG00000023908	Pkmyt1	6230424P17|AW209059|Myt1	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	1.5	1.0	5.5	0.0	2.0	5.5
Merged-chr19-41969594-2	chr19	41969116	41970116	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028152, intron 2 of 30)	intron (NM_028152, intron 2 of 30)	11520.0	NM_028152	72199.0	Mm.218940	NM_028152	ENSMUSG00000025159	Mms19	2410001K24Rik|2610042O15Rik|AI316855|C79368|C86341|Mms19l	MMS19 (MET18 S. cerevisiae)	protein-coding	7.0	7.0	2.5	10.0	19.0	12.0
Merged-chr3-36536184-2	chr3	36535684	36536684	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14739.0	NR_040411	100503068.0	Mm.389423	NR_040411	ENSMUSG00000085007	Gm11549	-	predicted gene 11549	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-59469237-2	chr17	59468737	59469737	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-455915.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-74064892-2	chr18	74064392	74065392	+	647.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172632)	promoter-TSS (NM_172632)	57.0	NM_172632	225724.0	Mm.254517	NM_172632	ENSMUSG00000024558	Mapk4	A330097D03Rik|Erk3|Prkm4|p63Mapk	mitogen-activated protein kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167366895-2	chr2	167366395	167367395	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17717.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-18217033-2	chr5	18216533	18217533	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR15|LTR|ERVK	143380.0	NM_010305	14677.0	Mm.254629	NM_010305	ENSMUSG00000057614	Gnai1	AU046200|Gialpha1|Gnai-1	guanine nucleotide binding protein (G protein), alpha inhibiting 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101197831-2	chr15	101197331	101198331	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007395, intron 3 of 8)	intron (NM_007395, intron 3 of 8)	3962.0	NR_105927	102466774.0		NR_105927	ENSMUSG00000106563	Mir6962	mmu-mir-6962	microRNA 6962	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23927923-1	chr16	23927423	23928423	+	647.5	f0_balb.idr	intron (NM_001008230, intron 1 of 1)	intron (NM_001008230, intron 1 of 1)	2871.0	NM_001008230	224055.0	Mm.39248	NM_001008230	ENSMUSG00000047531	Rtp2	Gm605	receptor transporter protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-50229975-2	chr19	50229475	50230475	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360457, intron 13 of 26)	intron (NM_001360457, intron 13 of 26)	448671.0	NM_001252501	58178.0	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130008045-1	chr5	130007545	130008545	+	647.5	f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-4996.0	NM_001357027	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	0.0	0.5	3.5	0.0	5.0	2.0
Merged-chr2-153077731-2	chr2	153077231	153078231	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145536, intron 6 of 8)	ID_B1|SINE|B4	11776.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	13.5	1.0	2.0	1.0	10.0	3.0
Merged-chr19-46058141-2	chr19	46057641	46058641	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346801, intron 1 of 13)	intron (NM_001346801, intron 1 of 13)	1602.0	NM_001081214	226169.0	Mm.2415	NM_145504	ENSMUSG00000055491	Pprc1	A930018M19|BC013720|PRC|mKIAA0595	peroxisome proliferative activated receptor, gamma, coactivator-related 1	protein-coding	4.5	5.5	3.5	0.0	1.5	8.0
Merged-chr6-135175190-1	chr6	135174690	135175690	+	647.5	f0_balb.idr	Intergenic	RMER15|LTR|ERVL	-6975.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	7.0	2.5	4.5	8.0	15.0	15.0
Merged-chr2-153225874-2	chr2	153225374	153226374	+	647.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198617)	promoter-TSS (NM_198617)	-433.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-40406582-2	chr6	40406082	40407082	+	647.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001356375, exon 9 of 9)	3' UTR (NM_001356375, exon 9 of 9)	29553.0	NM_001356375	243780.0	Mm.333006	NM_175528	ENSMUSG00000037172	E330009J07Rik	AI841796|Lchn|mKIAA1147	RIKEN cDNA E330009J07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-56278416-2	chr8	56277916	56278916	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-16136.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5631225-3	chr19	5630738	5631738	+	647.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4-int|LTR|ERVK	-6252.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	0.0	0.0	5.0	20.0	23.5	13.5
Merged-chr15-22721104-2	chr15	22720604	22721604	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21B|LTR|ERV1	-6120.0	NM_001165971	545091.0	Mm.475598	NM_001165971		Hnrnpa1l2-ps2	EG545091|Gm5803	heterogeneous nuclear ribonucleoprotein A1-like 2, pseudogene 2	protein-coding	6.0	0.0	0.5	8.0	0.0	0.5
Merged-chr2-64869566-2	chr2	64869066	64870066	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	153200.0	NM_016719	50915.0	Mm.214554	NM_016719	ENSMUSG00000026888	Grb14	AI505286	growth factor receptor bound protein 14	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr11-51935852-2	chr11	51935352	51936352	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31779.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29328619-2	chr6	29328119	29329119	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207258, intron 4 of 6)	ORR1D2|LTR|ERVL-MaLR	9479.0	NM_001289664	330277.0	Mm.87624	NM_207258	ENSMUSG00000039742	Fam71f1	GARI-L1|Gm764|NYD-SP18	family with sequence similarity 71, member F1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4558851-2	chr2	4558351	4559351	+	647.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177844)	promoter-TSS (NM_001177844)	-903.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132743237-2	chr4	132742737	132743737	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133888, intron 3 of 7)	MIR|SINE|MIR	-10691.0	NM_201368	381560.0	Mm.44558	NM_201368	ENSMUSG00000037752	Xkr8	4931440N07Rik|AI597014|Gm1031|XRG8|mXkr8	X-linked Kx blood group related 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43480221-2	chr4	43479683	43480683	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	3526.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	0.0	5.0	1.5	2.0	7.5	2.0
Merged-chr8-66333543-2	chr8	66333043	66334043	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 4 of 7)	MTB_Mm|LTR|ERVL-MaLR	-52758.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21779284-2	chr19	21778784	21779784	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033759, intron 1 of 23)	intron (NM_001033759, intron 1 of 23)	944.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127613764-2	chr7	127613264	127614264	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362197, intron 1 of 3)	intron (NM_001362197, intron 1 of 3)	669.0	NM_177226	320683.0	Mm.156718	NM_177226	ENSMUSG00000045639	Zfp629	9330199A09Rik|Znf629	zinc finger protein 629	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-123921510-2	chr10	123921003	123922003	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-547571.0	NR_028310	75030.0	Mm.159403	NR_028310	ENSMUSG00000112364	4930503E24Rik	-	eukaryotic translation initiation factor 3, subunit I pseudogene	pseudo	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr11-109426751-2	chr11	109426251	109427251	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252193, intron 1 of 7)	intron (NM_001252193, intron 1 of 7)	531.0	NM_001252193	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	10.5	18.0	12.0	10.5	18.0	10.5
Merged-chr15-44340982-2	chr15	44340482	44341482	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87129.0	NM_175009	223527.0	Mm.291828	NM_175009	ENSMUSG00000022338	Eny2	1810057B09Rik|6720481I12|DC6|Ey2	ENY2 transcription and export complex 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-118300238-2	chr12	118299738	118300738	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166385, intron 2 of 5)	intron (NM_001166385, intron 2 of 5)	1202.0	NM_009239	20688.0	Mm.34699	NM_009239	ENSMUSG00000025323	Sp4	5730497N03Rik|HF-1b|HF1-b	trans-acting transcription factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112868332-2	chr12	112867832	112868832	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7416.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128480516-2	chr6	128480016	128481016	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_028593, intron 2 of 4)	B2_Mm2|SINE|B2	41759.0	NR_028593	791299.0	Mm.297516	NR_028592	ENSMUSG00000059659	Gm10069	-	predicted gene 10069	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-33283845-2	chr4	33283345	33284345	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR53_Mm|LTR|ERVK	-26466.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22657167-2	chr11	22656667	22657667	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	144884.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-17626212-2	chr18	17625712	17626712	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45222.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113122045-2	chr12	113121545	113122545	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346696, intron 6 of 19)	intron (NM_001346696, intron 6 of 19)	-18191.0	NM_024223	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101262351-2	chr11	101261851	101262851	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175638, intron 1 of 18)	intron (NM_175638, intron 1 of 18)	1784.0	NM_175638	69847.0	Mm.23656	NM_175638	ENSMUSG00000035112	Wnk4	2010002J11Rik|Pha2b|Prkwnk4	WNK lysine deficient protein kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167956822-2	chr2	167956322	167957322	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	24495.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115528927-2	chr5	115528427	115529427	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	22251.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	6.0	12.0	14.0	0.0	4.0	9.0
Merged-chr5-38086243-3	chr5	38085740	38086740	+	647.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359398, intron 1 of 9)	intron (NM_001359398, intron 1 of 9)	47010.0	NM_026959	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	1.5	15.0	1.0	0.0	8.5	1.0
Merged-chr1-151511170-3	chr1	151510678	151511678	+	647.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10187.0	NM_001360847	19821.0	Mm.474038	NM_011277	ENSMUSG00000026484	Rnf2	AI326319|AI450156|AU019207|Ring1B|dinG	ring finger protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-65726002-3	chr16	65725439	65726439	+	647.388855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-89694.0	NM_028572	73569.0	Mm.25670	NM_028572	ENSMUSG00000091243	Vgll3	1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2	vestigial like family member 3	protein-coding	1.0	0.0	1.5	0.0	0.0	0.0
Merged-chr8-19713450-2	chr8	19712950	19713950	+	647.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-16126.0	NM_001270553	100861668.0	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68485443-2	chr11	68484943	68485943	+	647.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 5 of 18)	intron (NM_177320, intron 5 of 18)	-17576.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132599945-3	chr4	132599453	132600453	+	647.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER34A|LTR|ERV1	35886.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145785153-3	chr2	145784664	145785664	+	647.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028724)	promoter-TSS (NM_028724)	-952.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36844758-2	chr17	36844239	36845239	+	647.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025599, intron 2 of 9)	L2b|LINE|L2	7593.0	NM_001286726	22670.0	Mm.34587	NM_030698	ENSMUSG00000024457	Trim26	AI462198|Zfp173|Zfp1736	tripartite motif-containing 26	protein-coding	7.5	2.5	15.0	7.5	2.5	14.0
Merged-chr2-59318900-2	chr2	59318400	59319400	+	647.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 10 of 20)	B3|SINE|B2	67782.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-3916984-2	chr13	3916484	3917484	+	647.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_019671, intron 1 of 11)	intron (NM_019671, intron 1 of 11)	1236.0	NM_019671	56349.0	Mm.22261	NM_019671	ENSMUSG00000021215	Net1	Net1a|mNET1	neuroepithelial cell transforming gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40839511-2	chr4	40839011	40840011	+	647.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	10627.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135395501-2	chr5	135395001	135396001	+	647.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148932)	promoter-TSS (NM_148932)	-955.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54057129-3	chr13	54056636	54057636	+	647.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1478.0	NM_010076	13488.0	Mm.54161	NM_010076	ENSMUSG00000021478	Drd1	C030036C15Rik|Drd-1|Drd1a|Gpcr15	dopamine receptor D1	protein-coding	4.5	5.0	3.0	2.5	0.0	1.0
Merged-chr11-21013316-3	chr11	21012791	21013791	+	647.200012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78033.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-97716706-3	chr1	97716221	97717221	+	647.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173760, intron 25 of 27)	intron (NM_173760, intron 25 of 27)	53371.0	NM_173760	227399.0	Mm.220817	NM_173760	ENSMUSG00000040648	Ppip5k2	AW555814|Cfap160|D330021B20|Hisppd1|Vip2|mKIAA0433	diphosphoinositol pentakisphosphate kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-82042906-3	chr6	82042347	82043347	+	647.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145570, intron 1 of 2)	intron (NM_145570, intron 1 of 2)	1219.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	18.5	6.5	6.0	19.5	19.0	16.0
Merged-chr7-142400223-3	chr7	142399710	142400710	+	647.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12340.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	17.0	25.5	14.5	0.5	0.0	0.0
Merged-chr17-33641629-2	chr17	33641129	33642129	+	647.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028279, exon 2 of 10)	non-coding (NR_028279, exon 2 of 10)	3534.0	NR_028279	378460.0	Mm.272606	NM_001002842	ENSMUSG00000032739	Pram1	AY665714	PML-RAR alpha-regulated adaptor molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-53696080-1	chr9	53695580	53696580	+	647.0	f0_balb.idr	intron (NM_175562, intron 1 of 1)	PB1D7|SINE|Alu	10152.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	0.0	0.5	2.5	6.5	3.5	0.5
Merged-chr19-5651543-2	chr19	5651043	5652043	+	647.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164482, exon 16 of 16)	exon (NM_001164482, exon 16 of 16)	12164.0	NM_001164482	20469.0	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69438439-2	chr12	69437939	69438939	+	647.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37111.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-174279264-1	chr2	174278764	174279764	+	647.0	f1_balb.idr	Intergenic	Intergenic	-5056.0	NM_019690	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.0	1.0	0.0	0.0	1.0	0.0
Merged-chr11-116159076-2	chr11	116158576	116159576	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172571, intron 7 of 30)	intron (NM_172571, intron 7 of 30)	9102.0	NM_172571	217335.0	Mm.35241	NM_172571	ENSMUSG00000020776	Fbf1	1110033G01Rik|5930413D20|mKIAA1863	Fas (TNFRSF6) binding factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95853088-2	chr11	95852588	95853588	+	647.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-5729.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	0.0	2.5	0.0	0.0	0.0	0.0
Merged-chr6-33756197-2	chr6	33755697	33756697	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 10 of 17)	intron (NM_009148, intron 10 of 17)	-273251.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-16500406-2	chr9	16499906	16500906	+	647.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122175.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115655954-2	chr11	115655454	115656454	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	-27659.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141004032-2	chr4	141003532	141004532	+	647.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029097, exon 21 of 29)	exon (NM_029097, exon 21 of 29)	-6392.0	NM_001161799	17150.0	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137031176-2	chr5	137030676	137031676	+	647.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001039385, exon 2 of 2)	exon (NM_001039385, exon 2 of 2)	881.0	NM_001039385	381677.0	Mm.389697	NM_001039385	ENSMUSG00000037428	Vgf	Gm1052	VGF nerve growth factor inducible	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116847404-1	chr11	116846904	116847904	+	647.0	f1_balb.idr	intron (NM_028865, intron 1 of 4)	ID_B1|SINE|B4	3889.0	NM_028865	74319.0	Mm.429312	NM_028865	ENSMUSG00000090266	Mettl23	1110005A03Rik|1500035B17Rik|4933424L15Rik	methyltransferase like 23	protein-coding	1.0	6.0	5.0	7.0	2.0	7.5
Merged-chr11-69098135-1	chr11	69097635	69098635	+	647.0	f0_c57.idr	promoter-TSS (NM_011065)	promoter-TSS (NM_011065)	-814.0	NM_011065	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59289807-2	chr2	59289307	59290307	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 4 of 20)	intron (NM_175464, intron 4 of 20)	96875.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19491670-2	chr10	19491170	19492170	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152784, intron 2 of 3)	intron (NR_152784, intron 2 of 3)	-2973.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-25472135-1	chr18	25471635	25472635	+	647.0	f0_balb.idr	Intergenic	Intergenic	207613.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71118024-2	chr2	71117524	71118524	+	647.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028593)	promoter-TSS (NM_028593)	-30.0	NM_028593	73649.0	Mm.45435	NM_028593	ENSMUSG00000027015	Cybrd1	2210407P13Rik|Dcytb	cytochrome b reductase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107037729-1	chr3	107037229	107038229	+	647.0	f0_balb.idr	exon (NM_008418, exon 1 of 1)	exon (NM_008418, exon 1 of 1)	1567.0	NM_008418	16491.0	Mm.30640	NM_008418	ENSMUSG00000047959	Kcna3	Kca1-3|Kv1.3|Mk-3	potassium voltage-gated channel, shaker-related subfamily, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25197467-3	chr12	25196978	25197978	+	647.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68304.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	11.0	6.5	2.5	4.0	5.5	8.0
Merged-chr15-72806802-2	chr15	72806302	72807302	+	647.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_002864, exon 1 of 1)	non-coding (NR_002864, exon 1 of 1)	3522.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0.0	0.5	0.0	0.0	1.5	0.0
Merged-chr6-134429584-1	chr6	134429084	134430084	+	647.0	f1_c57bl6.idr	intron (NM_001355686, intron 3 of 5)	(CA)n|Simple_repeat|Simple_repeat	15156.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	3.0	9.0	1.5	0.0	6.0	0.5
Merged-chr19-41378610-2	chr19	41378110	41379110	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 1 of 16)	ID_B1|SINE|B4	6460.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	34.0	35.0	31.5	27.5	43.0	25.0
Merged-chr16-94487939-2	chr16	94487439	94488439	+	647.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38690.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34243512-3	chr5	34243032	34244032	+	647.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 1 of 12)	intron (NM_001015039, intron 1 of 12)	44792.0	NM_001015039	231125.0	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-84593259-1	chr7	84592759	84593759	+	647.0	f1_balb.idr	exon (NM_010176, exon 10 of 14)	exon (NM_010176, exon 10 of 14)	12683.0	NM_010176	14085.0	Mm.3798	NM_010176	ENSMUSG00000030630	Fah	swst	fumarylacetoacetate hydrolase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-17675194-2	chr18	17674694	17675694	+	647.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17D2|LTR|ERVK	-94204.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-67828298-2	chr9	67827798	67828798	+	647.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4032.0	NM_001163143	244911.0	Mm.325849	NM_001163143	ENSMUSG00000047990	C2cd4a	EG244911|Fam148a	C2 calcium-dependent domain containing 4A	protein-coding	1.0	0.0	0.0	1.0	0.0	0.0
Merged-chr2-84632641-2	chr2	84632141	84633141	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007615, intron 1 of 19)	B1F|SINE|Alu	16839.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	3.5	5.0	14.0	13.0	8.5	5.0
Merged-chr16-92639335-2	chr16	92638835	92639835	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 5 of 6)	intron (NM_001111022, intron 5 of 6)	57994.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61838925-2	chr10	61838425	61839425	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304757, intron 37 of 37)	intron (NM_001304757, intron 37 of 37)	-55061.0	NM_207000	404634.0	Mm.272870	NM_207000	ENSMUSG00000020086	H2afy2	macroH2A2	H2A histone family, member Y2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34368672-2	chr6	34368172	34369172	+	647.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008012)	TTS (NM_008012)	14526.0	NM_008012	14187.0	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-55910217-1	chr7	55909717	55910717	+	647.0	f0_balb.idr	intron (NM_011370, intron 22 of 30)	L1MC4a|LINE|L1	52276.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	184.5	366.5	232.0	161.0	364.0	198.0
Merged-chr19-53477463-2	chr19	53476963	53477963	+	647.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12667.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57761911-2	chr9	57761411	57762411	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007713, intron 1 of 12)	intron (NM_007713, intron 1 of 12)	3949.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4336041-1	chr11	4335541	4336541	+	647.0	f0_balb.idr	Intergenic	Intergenic	69245.0	NM_001039537	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184589507-1	chr1	184589007	184590007	+	647.0	f0_balb.idr	Intergenic	Intergenic	-31816.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37072639-2	chr10	37072139	37073139	+	647.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66287.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180105959-2	chr2	180105459	180106459	+	647.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1552.0	NM_133849	99296.0	Mm.285360	NM_133849	ENSMUSG00000039059	Hrh3	AW049250|H3R|HH3R	histamine receptor H3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69295252-2	chr12	69294752	69295752	+	647.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-1429.0	NM_027117	69554.0	Mm.234368	NM_027117	ENSMUSG00000020978	Klhdc2	2310022K15Rik|D12Ertd522e|HCLP-1|LCP	kelch domain containing 2	protein-coding	8.0	15.5	8.0	7.0	2.0	3.0
Merged-chr7-75753671-3	chr7	75753141	75754141	+	647.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029332, exon 37 of 37)	3' UTR (NM_029332, exon 37 of 37)	-94697.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-61244296-3	chr3	61243738	61244738	+	647.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120269.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-75895567-2	chr5	75895067	75896067	+	647.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82861.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	0.0	1.5	0.5	0.0	0.0	0.0
Merged-chr5-99271757-2	chr5	99271257	99272257	+	647.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18830.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.5	0.0	2.5	0.0
Merged-chr5-121594774-2	chr5	121594274	121595274	+	647.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308450)	promoter-TSS (NM_001308450)	-950.0	NM_001308450	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44491506-2	chr7	44491006	44492006	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355107, intron 6 of 7)	intron (NM_001355107, intron 6 of 7)	5007.0	NM_197991	69683.0	Mm.294759	NM_197991	ENSMUSG00000008140	Emc10	2310044H10Rik|5430410O10Rik|Inm02|Mirta22	ER membrane protein complex subunit 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54825741-1	chr18	54825241	54826241	+	647.0	f1_balb.idr	Intergenic	RMER1A|Other|Other	164439.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	1.0	0.0	1.0	0.5	1.5	0.0
Merged-chr11-94381526-2	chr11	94381020	94382020	+	647.0	f0_balb.idr|f1_balb.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	11456.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	10.0	28.5	6.0	20.5	26.5	12.5
Merged-chr11-13004412-1	chr11	13003912	13004912	+	647.0	f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-539452.0	NM_001282993	12808.0	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-89382115-2	chr7	89381615	89382615	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 1 of 14)	intron (NM_001360746, intron 1 of 14)	22107.0	NM_001360746	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128401797-2	chr10	128401297	128402297	+	647.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136237)	promoter-TSS (NM_001136237)	-573.0	NM_001136237	72002.0	Mm.22983	NM_028051	ENSMUSG00000039878	Slc39a5	1810013D05Rik|2010205A06Rik|Zip5	solute carrier family 39 (metal ion transporter), member 5	protein-coding	0.0	1.0	0.0	0.0	1.0	0.0
Merged-chr16-50395878-2	chr16	50395378	50396378	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 2 of 16)	intron (NM_027444, intron 2 of 16)	36511.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31021675-2	chr14	31021175	31022175	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359857, intron 1 of 30)	B4A|SINE|B4	1970.0	NM_001359856	66923.0	Mm.27913	NM_025847	ENSMUSG00000042323	Pbrm1	2610016F04Rik|AI507524|BAF180|Pb1	polybromo 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-32346139-1	chr6	32345639	32346639	+	647.0	f0_balb.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-165002.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0.0	1.0	5.0	0.0	3.0	2.5
Merged-chr4-136125210-1	chr4	136124710	136125710	+	647.0	f0_c57.idr	Intergenic	Intergenic	-18612.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	75.5	231.0	159.0	101.5	221.5	144.5
Merged-chr10-100950007-3	chr10	100949509	100950509	+	647.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-208374.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49224868-2	chr13	49224368	49225368	+	647.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-8842.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-24649583-1	chr12	24649083	24650083	+	647.0	f1_balb.idr	Intergenic	B4|SINE|B4	-1788.0	NM_178357	194655.0	Mm.9616	NM_178357	ENSMUSG00000020653	Klf11	9830142A17|D12Ertd427e|Tieg2|Tieg2b|Tieg3	Kruppel-like factor 11	protein-coding	1.0	1.0	2.0	2.0	0.5	3.0
Merged-chr2-165885234-1	chr2	165884734	165885734	+	647.0	f0_c57.idr	promoter-TSS (NM_001252584)	promoter-TSS (NM_001252584)	-396.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	11.5	61.0	29.5	22.5	73.0	32.5
Merged-chr15-93403838-2	chr15	93403338	93404338	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358749, intron 2 of 8)	B3|SINE|B2	5374.0	NM_001285863	223828.0	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-79927531-2	chr7	79927031	79928031	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027420, intron 5 of 5)	intron (NM_027420, intron 5 of 5)	-6891.0	NM_009682	11778.0	Mm.220173	NM_009682	ENSMUSG00000063801	Ap3s2	[s]3B	adaptor-related protein complex 3, sigma 2 subunit	protein-coding	13.5	0.0	0.0	0.0	0.0	0.5
Merged-chr13-54797497-1	chr13	54796997	54797997	+	647.0	f1_c57bl6.idr	TTS (NM_028841)	TTS (NM_028841)	8092.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr13-4765594-2	chr13	4765094	4766094	+	647.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-156430.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	2.0	1.5	0.5	4.0	5.5	0.0
Merged-chr1-152266577-3	chr1	152266067	152267067	+	647.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	120115.0	NM_025677	66637.0	Mm.379120	NM_025677	ENSMUSG00000014980	Tsen15	5730449L18Rik|AL023077|Sen15	tRNA splicing endonuclease subunit 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85305578-1	chr1	85305078	85306078	+	647.0	f1_balb.idr	Intergenic	Intergenic	-35012.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-148931329-2	chr6	148930829	148931829	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355645, intron 2 of 5)	B1_Mur2|SINE|Alu	13497.0	NM_001355645	56306.0	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Sinhcaf|Tera	family with sequence similarity 60, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20930151-1	chr14	20929651	20930651	+	647.0	f0_balb.idr	intron (NM_009502, intron 1 of 20)	intron (NM_009502, intron 1 of 20)	753.0	NM_009502	22330.0	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding	0.0	2.5	3.0	1.5	0.0	0.5
Merged-chr11-107448088-2	chr11	107447588	107448588	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	B4A|SINE|B4	22632.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-17490898-1	chr18	17490398	17491398	+	647.0	f0_balb.idr	Intergenic	Intergenic	90092.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11481593-2	chr8	11481093	11482093	+	647.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-3094.0	NM_011227	19332.0	Mm.37632	NM_011227	ENSMUSG00000031504	Rab20	AA536966|D8Ertd350e	RAB20, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125482357-1	chr8	125481857	125482857	+	647.0	f1_c57bl6.idr	intron (NM_001357372, intron 3 of 21)	intron (NM_001357372, intron 3 of 21)	10476.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	4.0	1.5	1.5	4.5	0.0	0.0
Merged-chr17-28687905-2	chr17	28687405	28688405	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290320, intron 1 of 19)	RSINE1|SINE|B4	2082.0	NM_001290320	224661.0		NM_146076	ENSMUSG00000036196	Slc26a8	-	solute carrier family 26, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25313291-1	chr10	25312791	25313791	+	647.0	f0_balb.idr	Intergenic	Intergenic	-14128.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr15-102327223-2	chr15	102326723	102327723	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027044, intron 3 of 5)	intron (NM_027044, intron 3 of 5)	1107.0	NM_027044	56612.0	Mm.158264	NM_020031	ENSMUSG00000001289	Pfdn5	1190001O17Rik|1700010A06Rik|D15Ertd697e|Eig1|MM-1	prefoldin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60757208-1	chr13	60756708	60757708	+	647.0	f1_balb.idr	intron (NM_134062, intron 24 of 26)	intron (NM_134062, intron 24 of 26)	29156.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	6.5	9.0	6.5	0.0	9.5	11.0
Merged-chr5-104000056-2	chr5	103999556	104000556	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053262, intron 5 of 6)	AT_rich|Low_complexity|Low_complexity	21740.0	NM_053262	114664.0	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135651111-2	chr7	135650611	135651611	+	647.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316681)	promoter-TSS (NM_001316681)	-788.0	NM_001316681	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120102893-1	chr7	120102393	120103393	+	647.0	f0_c57.idr	intron (NM_145586, intron 1 of 4)	intron (NM_145586, intron 1 of 4)	467.0	NM_145586	233806.0	Mm.257952	NM_145586	ENSMUSG00000030917	Tmem159	8430420C20Rik	transmembrane protein 159	protein-coding	0.0	0.0	0.0	11.5	0.0	0.0
Merged-chr15-10890442-1	chr15	10889942	10890942	+	647.0	f0_balb.idr	Intergenic	Intergenic	61391.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96164570-2	chr10	96164070	96165070	+	647.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-61637.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-83147912-2	chr14	83147412	83148412	+	647.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	927378.0	NR_153783	102635012.0	Mm.399509	NR_153783	ENSMUSG00000115043	Gm32455	-	predicted gene, 32455	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-69637470-2	chr2	69636970	69637970	+	647.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9785.0	NM_028284	72569.0	Mm.252136	NM_028284	ENSMUSG00000063145	Bbs5	1700049I01Rik|2700023J09Rik	Bardet-Biedl syndrome 5 (human)	protein-coding	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr1-193703181-2	chr1	193702719	193703719	+	647.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-195689.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	0.5	0.0	0.0	0.0	0.0	1.0
Merged-chr2-91264499-2	chr2	91263999	91264999	+	647.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166024)	promoter-TSS (NM_001166024)	-616.0	NM_001166024	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-95380700-1	chr1	95380200	95381200	+	647.0	f0_balb.idr	Intergenic	MTEa|LTR|ERVL-MaLR	67072.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73211619-2	chr14	73211119	73212119	+	647.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009029, exon 20 of 27)	exon (NM_009029, exon 20 of 27)	-4768.0	NR_030459	751541.0		NR_030459	ENSMUSG00000076121	Mir687	Mirn687|mir-687|mmu-mir-687	microRNA 687	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-5081022-2	chr7	5080522	5081522	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252454, intron 1 of 10)	MIRb|SINE|MIR	787.0	NM_001252454	13854.0	Mm.3091	NM_010147	ENSMUSG00000035203	Epn1	AA269831|Ibp1	epsin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46669202-2	chr19	46668702	46669702	+	647.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007809, exon 5 of 8)	exon (NM_007809, exon 5 of 8)	3798.0	NM_007809	13074.0	Mm.1262	NM_007809	ENSMUSG00000003555	Cyp17a1	Cyp17|p450c17	cytochrome P450, family 17, subfamily a, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43797456-3	chr7	43796821	43797821	+	646.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008940)	promoter-TSS (NM_008940)	-256.0	NM_001324398	259277.0	Mm.458023	NM_008940	ENSMUSG00000064023	Klk8	BSP1|NP|Nrpn|Prss19	kallikrein related-peptidase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-104467370-2	chr14	104466870	104467870	+	646.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011143, intron 1 of 2)	intron (NM_011143, intron 1 of 2)	629.0	NM_011143	18996.0	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103173601-3	chr11	103173107	103174107	+	646.899963	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019679, intron 1 of 26)	intron (NM_019679, intron 1 of 26)	2469.0	NM_019679	57778.0	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-52065829-3	chr11	52065305	52066305	+	646.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166654, intron 13 of 13)	BGLII_B|LTR|ERVK	-33019.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50824142-3	chr15	50823644	50824644	+	646.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 3 of 5)	MTC|LTR|ERVL-MaLR	64905.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73467270-4	chr2	73466724	73467724	+	646.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-13335.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81494052-2	chr10	81493552	81494552	+	646.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_134009, intron 1 of 13)	intron (NM_134009, intron 1 of 13)	2311.0	NM_134009	103425.0	Mm.302791	NM_134009	ENSMUSG00000020238	Ncln	3100002P13Rik|AW120537	nicalin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-136080124-4	chr3	136079573	136080573	+	646.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 11 of 16)	intron (NM_001033350, intron 11 of 16)	-239804.0	NR_040540	71038.0	Mm.410798	NR_040540	ENSMUSG00000106306	4933401H06Rik	-	RIKEN cDNA 4933401H06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106475118-2	chr9	106474625	106475625	+	646.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001311150, exon 3 of 11)	exon (NM_001311150, exon 3 of 11)	1824.0	NM_001311150	235587.0	Mm.273659	NM_145619	ENSMUSG00000023249	Parp3	A930002C11Rik|AW990611|Adprt3|Adprtl3|PARP-3|pADPRT-3	poly (ADP-ribose) polymerase family, member 3	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr3-52049634-2	chr3	52049134	52050134	+	646.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	ID_B1|SINE|B4	55372.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180023858-2	chr2	180023345	180024345	+	646.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1142.0	NM_177727	241846.0	Mm.21577	NM_177727	ENSMUSG00000039108	Lsm14b	9430078B04|BC040823	LSM family member 14B	protein-coding	7.5	5.0	5.5	6.5	10.5	5.0
Merged-chr1-79602153-1	chr1	79601653	79602653	+	646.833313	f1_balb.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	69819.0	NM_183027	252903.0	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	2.0	1.5	3.5	17.5	7.5	30.0
Merged-chr11-70588761-4	chr11	70588279	70589279	+	646.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 1 of 30)	intron (NM_016713, intron 1 of 30)	25898.0	NM_016713	50932.0	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3789408-2	chr4	3788908	3789908	+	646.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 12 of 12)	B4|SINE|B4	46247.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	8.0	4.0	4.0	8.0	4.0	15.5
Merged-chr8-70629208-2	chr8	70628715	70629715	+	646.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001330687)	TTS (NM_001330687)	2880.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	14.5	28.0	36.0	22.5	30.0	15.5
Merged-chr7-24642658-3	chr7	24642160	24643160	+	646.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	6090.0	NM_133743	72434.0	Mm.281093	NM_133743	ENSMUSG00000057454	Lypd3	2310061G07Rik|C4.4a	Ly6/Plaur domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138258998-4	chr5	138258523	138259523	+	646.700012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153161)	TTS (NM_153161)	3541.0	NM_001081108	66096.0	Mm.206901	NM_001081108	ENSMUSG00000050552	Lamtor4	0910001L09Rik|AV006840	late endosomal/lysosomal adaptor, MAPK and MTOR activator 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-46965105-3	chr14	46964620	46965620	+	646.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	-10192.0	NR_105813	102465206.0		NR_105813	ENSMUSG00000099036	Mir378c	Gm27930|mmu-mir-378c	microRNA 378c	ncRNA	0.0	0.0	1.5	2.0	0.0	0.0
Merged-chr8-88619320-3	chr8	88618794	88619794	+	646.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16834.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	1.0	8.5	2.5	24.0	7.0	0.5
Merged-chr13-54622655-3	chr13	54622116	54623116	+	646.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178397, intron 1 of 10)	intron (NM_178397, intron 1 of 10)	832.0	NM_178397	76577.0	Mm.194459	NM_178397	ENSMUSG00000025873	Faf2	2210404D11Rik|AI462440|Ubxd8|mKIAA0887	Fas associated factor family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103915838-2	chr3	103915338	103916338	+	646.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356557, intron 1 of 6)	intron (NM_001356557, intron 1 of 6)	1718.0	NM_172684	229675.0	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|KDM9|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-19567071-1	chr4	19566571	19567571	+	646.666687	f0_balb.idr	intron (NM_027769, intron 1 of 15)	PB1D9|SINE|Alu	3037.0	NM_027769	70568.0	Mm.38390	NM_027769	ENSMUSG00000028228	Cpne3	5430428M23Rik|5730450C07Rik|C85108|CPN3	copine III	protein-coding	0.0	0.0	6.5	5.5	8.0	8.0
Merged-chr6-99187698-3	chr6	99187215	99188215	+	646.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	78800.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-57698488-1	chr11	57697988	57698988	+	646.666687	f0_balb.idr	intron (NM_134189, intron 1 of 11)	intron (NM_134189, intron 1 of 11)	-48994.0	NR_153850	78762.0	Mm.362149	NR_153850		4933424L21Rik	-	RIKEN cDNA 4933424L21 gene	ncRNA	2.0	0.5	7.0	4.0	13.0	14.0
Merged-chr10-8864027-4	chr10	8863526	8864526	+	646.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	22044.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.5	5.0	4.5	3.5	6.0	3.0
Merged-chr7-49197966-3	chr7	49197443	49198443	+	646.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	B1F|SINE|Alu	-35785.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-143962354-3	chr2	143961847	143962847	+	646.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024281, intron 10 of 23)	intron (NM_024281, intron 10 of 23)	47016.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80058811-2	chr11	80058311	80059311	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018776, intron 4 of 7)	intron (NM_018776, intron 4 of 7)	22180.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161057423-2	chr1	161056936	161057936	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172644, intron 8 of 16)	intron (NM_172644, intron 8 of 16)	13224.0	NM_172644	226539.0	Mm.28125	NM_172644	ENSMUSG00000026709	Dars2	5830468K18Rik|aspRS	aspartyl-tRNA synthetase 2 (mitochondrial)	protein-coding	6.0	6.5	5.0	8.0	9.0	8.5
Merged-chr9-20923503-2	chr9	20923003	20924003	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199432, intron 18 of 38)	intron (NM_001199432, intron 18 of 38)	-9339.0	NR_106049	102466802.0		NR_106049	ENSMUSG00000099147	Mir7081	Gm27904|mmu-mir-7081	microRNA 7081	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80922995-2	chr12	80922495	80923495	+	646.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_033786)	TTS (NR_033786)	1452.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108208872-2	chr6	108208372	108209372	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4224.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9487112-2	chr18	9486607	9487607	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36953.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0.0	8.5	0.0	2.0	0.0	0.0
Merged-chr6-71157053-2	chr6	71156553	71157553	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-12673.0	NM_178413	232078.0	Mm.37547	NM_178413	ENSMUSG00000054474	Thnsl2	BC051244|TSH2	threonine synthase-like 2 (bacterial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88647206-2	chr3	88646706	88647706	+	646.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001198911, exon 23 of 23)	3' UTR (NM_001198911, exon 23 of 23)	5936.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	0.0	1.5	4.0	0.0	2.0	9.0
Merged-chr5-30111704-2	chr5	30111204	30112204	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167879, intron 2 of 5)	intron (NM_001167879, intron 2 of 5)	-5618.0	NM_001256263	433868.0	Mm.450696	NM_001256263	ENSMUSG00000086815	3110082J24Rik	-	RIKEN cDNA 3110082J24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50889661-3	chr17	50889163	50890163	+	646.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 13 of 21)	intron (NM_028162, intron 13 of 21)	190982.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-7096990-2	chr6	7096490	7097490	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	140972.0	NM_001077713	71238.0	Mm.389086	NM_001077713	ENSMUSG00000042505	Sdhaf3	0610005M07Rik|4933430A16Rik|Acn9	succinate dehydrogenase complex assembly factor 3	protein-coding	1.5	0.0	1.0	0.0	0.0	0.0
Merged-chr1-178350531-2	chr1	178350031	178351031	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-12716.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-45847622-2	chr11	45847122	45848122	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4342.0	NM_001346760	216705.0	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126976302-2	chr8	126975802	126976802	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	3136.0	NR_151744	629746.0	Mm.264954	NR_151744		Gm29688	-	predicted gene, 29688	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105344287-2	chr8	105343787	105344787	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	3683.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45073970-2	chr19	45073470	45074470	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1271.0	NM_001362398	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101834422-2	chr5	101833922	101834922	+	646.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172882, exon 67 of 67)	3' UTR (NM_172882, exon 67 of 67)	69292.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82340365-2	chr15	82339865	82340865	+	646.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177391)	promoter-TSS (NM_177391)	-487.0	NM_001357717	338368.0	Mm.444916	NM_177391	ENSMUSG00000049687	Fam109b	C920005C14Rik|IPIP27B|Ses2	family with sequence similarity 109, member B	protein-coding	3.5	1.0	3.0	0.0	4.5	6.5
Merged-chr15-76670971-2	chr15	76670471	76671471	+	646.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358933)	promoter-TSS (NM_001358933)	-672.0	NM_001358933	73062.0	Mm.322901	NM_033371	ENSMUSG00000033819	Ppp1r16a	2900084E10Rik|Mypt3|R75527	protein phosphatase 1, regulatory (inhibitor) subunit 16A	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr8-56486198-3	chr8	56485696	56486696	+	646.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1228.0	NR_131020	75123.0	Mm.72666	NR_131020	ENSMUSG00000110310	4930518J21Rik	-	RIKEN cDNA 4930518J21 gene	ncRNA	6.0	16.0	2.0	4.5	10.0	3.0
Merged-chr6-128842095-2	chr6	128841595	128842595	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15780.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111183076-2	chr12	111182576	111183576	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_130987, intron 1 of 3)	ID_B1|SINE|B4	1415.0	NR_130987	78062.0	Mm.427248	NR_130987	ENSMUSG00000083193	4930595D18Rik	-	RIKEN cDNA 4930595D18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23410800-2	chr13	23410300	23411300	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12B|LTR|ERVK	13066.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-91260701-3	chr15	91260203	91261203	+	646.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68696.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-99342216-2	chr13	99341716	99342716	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026873, intron 2 of 9)	intron (NM_026873, intron 2 of 9)	2462.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	2.0	4.5	0.5	3.0	3.5	1.0
Merged-chr13-58449082-2	chr13	58448582	58449582	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-45739.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90537772-2	chr2	90537272	90538272	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	42875.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	6.5	8.5	7.0	7.0	3.0	7.0
Merged-chr17-45733522-2	chr17	45733022	45734022	+	646.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152153)	promoter-TSS (NR_152153)	322.0	NM_028164	72240.0	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128032518-2	chr6	128032016	128033016	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356301, intron 2 of 7)	intron (NM_001356301, intron 2 of 7)	111062.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	0.0	4.0	0.5	0.0	0.0	0.0
Merged-chr12-86076615-2	chr12	86076115	86077115	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009368, intron 1 of 6)	intron (NM_009368, intron 1 of 6)	2426.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-113181607-2	chr7	113181107	113182107	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-25858.0	NM_001243048	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	0.0	3.0	0.0	0.0	2.5	5.5
Merged-chr4-55644138-2	chr4	55643638	55644638	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111663.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.0	3.0	1.5	7.0	3.0	4.0
Merged-chr6-81769241-2	chr6	81768694	81769694	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	126469.0	NR_106091	102465711.0		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA	0.0	0.0	0.0	0.0	2.5	0.0
Merged-chr2-97568769-2	chr2	97568269	97569269	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289744, intron 1 of 1)	L1_Mus1|LINE|L1	101112.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	1.0	2.5	1.5	0.0	0.0	0.0
Merged-chr8-79158278-2	chr8	79157778	79158778	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 8 of 14)	MER20|DNA|hAT-Charlie	90305.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153746417-2	chr1	153745917	153746917	+	646.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011267)	TTS (NM_011267)	-3009.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-72687022-2	chr1	72686522	72687522	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347063, intron 5 of 23)	L1_Mus3|LINE|L1	13542.0	NM_176980	319695.0	Mm.249056	NM_176980	ENSMUSG00000039342	Ankar	4932422E22Rik	ankyrin and armadillo repeat containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27538789-2	chr7	27538289	27539289	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317355, intron 9 of 13)	intron (NM_001317355, intron 9 of 13)	14429.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85998214-2	chr1	85997714	85998714	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23728.0	NM_001122732	70060.0	Mm.196313	NM_027029	ENSMUSG00000026226	Spata3	1700011N12Rik|1700029H01Rik|4930424D10Rik|Mtsarg1|Tsarg1	spermatogenesis associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98963849-2	chr7	98963349	98964349	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 12 of 14)	RLTR44A|LTR|ERVK	125004.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-9531406-2	chr11	9530906	9531906	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 45 of 61)	L1MA8|LINE|L1	339464.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111045567-2	chr9	111045067	111046067	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11677.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-150376690-2	chr1	150376190	150377190	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357579, intron 9 of 13)	Lx8b|LINE|L1	-16148.0	NM_133780	108989.0	Mm.174256	NM_133780	ENSMUSG00000006005	Tpr	2610029M07Rik|C77892	translocated promoter region, nuclear basket protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-14893210-1	chr3	14892710	14893710	+	646.5	f0_balb.idr	intron (NM_001357334, intron 3 of 7)	intron (NM_001357334, intron 3 of 7)	6922.0	NM_009801	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	2.0	4.5	2.0	4.5	6.0	0.0
Merged-chr17-55758535-2	chr17	55758035	55759035	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139138, intron 1 of 16)	L1_Mus2|LINE|L1	8551.0	NM_139138	52614.0	Mm.210497	NM_139138	ENSMUSG00000032915	Adgre4	D17Ertd479e|Egf-tm7|Emr4|Fire|Gpr127	adhesion G protein-coupled receptor E4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122715524-2	chr10	122715028	122716028	+	646.5	f0_balb.idr|f1_balb.idr	intron (NM_001110218, intron 1 of 9)	URR1B|DNA|hAT-Charlie	36213.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	8.0	27.0	11.0	12.5	9.5	14.0
Merged-chr16-52025674-2	chr16	52025174	52026174	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5875.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58640650-3	chr11	58640145	58641145	+	646.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001039047, exon 1 of 6)	exon (NM_001039047, exon 1 of 6)	180.0	NM_001039047	216781.0	Mm.339507	NM_001039047	ENSMUSG00000037124	Trim58	Gm16|Gm1783	tripartite motif-containing 58	protein-coding	7.0	0.5	1.0	4.0	5.5	1.0
Merged-chr17-32494818-2	chr17	32494318	32495318	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11644.0	NM_001101445	208285.0	Mm.311422	NM_001101445	ENSMUSG00000091586	Cyp4f17	EG208285	cytochrome P450, family 4, subfamily f, polypeptide 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-31634357-2	chr11	31633857	31634857	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37505.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	7.0	4.5	6.0	0.0	1.5	0.5
Merged-chr10-42173271-2	chr10	42172771	42173771	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103471.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133397762-2	chr4	133397262	133398262	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016981, intron 1 of 11)	intron (NM_016981, intron 1 of 11)	27986.0	NR_039582	100628620.0		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	1.0	1.5	0.0	0.0	0.0	0.0
Merged-chr1-155465626-2	chr1	155465126	155466126	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48182.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89802204-2	chr3	89801704	89802704	+	646.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	28595.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36867159-2	chr17	36866701	36867701	+	646.375	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024134)	promoter-TSS (NM_001024134)	9.0	NM_001177872	69097.0	Mm.307027	NM_001024134	ENSMUSG00000050747	Trim15	1810012B10Rik	tripartite motif-containing 15	protein-coding	1.5	11.0	0.0	3.0	14.0	0.0
Merged-chr16-43967000-2	chr16	43966467	43967467	+	646.333374	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	12083.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	3.5	12.5	5.5	10.5	13.5	14.5
Merged-chr11-120619308-2	chr11	120618808	120619808	+	646.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_153056, intron 9 of 9)	intron (NM_153056, intron 9 of 9)	-1363.0	NM_001347615	68671.0	Mm.21439	NM_024229	ENSMUSG00000025137	Pcyt2	1110033E03Rik|ET	phosphate cytidylyltransferase 2, ethanolamine	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45108712-2	chr4	45108212	45109212	+	646.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134646)	promoter-TSS (NM_001134646)	-599.0	NM_001099675	68512.0	Mm.282081	NM_001099675	ENSMUSG00000078713	Tomm5	1110019J04Rik|Tom5	translocase of outer mitochondrial membrane 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-114729422-2	chr9	114728922	114729922	+	646.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1781.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-77421769-3	chr8	77421278	77422278	+	646.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 5 of 22)	intron (NM_030113, intron 5 of 22)	-95278.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-48580988-3	chr9	48580446	48581446	+	646.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	24177.0	NM_010924	18113.0	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	28.0	18.0	20.5	6.5	30.0	4.5
Merged-chr10-56163171-3	chr10	56162662	56163662	+	646.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033385, intron 15 of 32)	intron (NM_001033385, intron 15 of 32)	56245.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9766239-3	chr13	9765741	9766741	+	646.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199141)	promoter-TSS (NM_001199141)	-920.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-69308095-3	chr10	69307598	69308598	+	646.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER30|DNA|hAT-Charlie	44814.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-35673794-2	chr5	35673294	35674294	+	646.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042615, intron 1 of 6)	intron (NM_001042615, intron 1 of 6)	5986.0	NM_001042615	78558.0	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-109261279-2	chr13	109260779	109261779	+	646.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-63465.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124033309-2	chr5	124032809	124033809	+	646.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1049.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	3.5	10.0	0.0	4.0	5.0	2.0
Merged-chr2-27300564-2	chr2	27300064	27301064	+	646.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 4 of 29)	intron (NR_133905, intron 4 of 29)	-53261.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88173569-2	chr3	88173069	88174069	+	646.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_045997, intron 2 of 2)	intron (NR_045997, intron 2 of 2)	4216.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	0.5	1.0	7.0	1.0	1.0	1.0
Merged-chr13-49172222-2	chr13	49171722	49172722	+	646.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15325.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117164692-2	chr11	117164192	117165192	+	646.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34969.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103717138-2	chr14	103716638	103717638	+	646.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-17706.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111725036-3	chr10	111724488	111725488	+	646.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130715.0	NR_045344	71321.0	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-65126290-3	chr6	65125798	65126798	+	646.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019455, intron 4 of 5)	intron (NM_019455, intron 4 of 5)	18432.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14604281-6	chr2	14603867	14604867	+	646.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023116)	promoter-TSS (NM_023116)	61.0	NM_023116	12296.0	Mm.313930	NM_023116	ENSMUSG00000057914	Cacnb2	AW060387|CAB2|Cavbeta2|Cchb2	calcium channel, voltage-dependent, beta 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25559401-2	chr9	25558911	25559911	+	646.166626	f0_balb.idr|f0_c57.idr	intron (NM_026189, intron 3 of 7)	Lx4B|LINE|L1	77814.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10350701-2	chr17	10350201	10351201	+	646.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26099.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25680276-2	chr15	25679776	25680776	+	646.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 2 of 40)	intron (NM_019472, intron 2 of 40)	57726.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65583610-2	chr9	65583110	65584110	+	646.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-3523.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39557610-5	chr6	39557081	39558081	+	646.159973	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172477, exon 1 of 19)	5' UTR (NM_172477, exon 1 of 19)	253.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-49472774-4	chr5	49472272	49473272	+	646.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-187113.0	NM_001199244	80334.0	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	0.5	0.0	4.0	13.0	8.5	1.0
Merged-chr5-3894120-2	chr5	3893620	3894620	+	646.083374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013023)	promoter-TSS (NM_001013023)	-187.0	NM_172135	545725.0	Mm.99593	NM_172135	ENSMUSG00000040429	Mterf1a	4931431L11Rik|9230106K09Rik|Mterf|Mterf1|mTERF1b	mitochondrial transcription termination factor 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3085625-3	chr4	3085131	3086131	+	646.083313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86452.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-151021022-3	chr5	151020523	151021523	+	646.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68416.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88692090-3	chr8	88691598	88692598	+	646.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4930.0	NM_001128170	74256.0	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	1.5	7.5	0.5	2.0	7.0	6.5
Merged-chr9-118647645-2	chr9	118647149	118648149	+	646.049988	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	40940.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	44.0	36.5	31.5	18.0	21.0	32.5
Merged-chr15-98516104-2	chr15	98515604	98516604	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3730.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-68206058-2	chr8	68205557	68206557	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70471.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	25.5	53.5	36.0	5.0	38.0	36.0
Merged-chr14-34401361-2	chr14	34400861	34401861	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153127, intron 6 of 6)	intron (NM_153127, intron 6 of 6)	25857.0	NM_153127	105450.0	Mm.272673	NM_153127	ENSMUSG00000041445	Mmrn2	AA986839|ENDOGLYX1|Emilin3|EndoGlyx-1	multimerin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65591527-2	chr9	65591027	65592027	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172453, intron 6 of 11)	intron (NM_172453, intron 6 of 11)	4367.0	NM_001357527	208084.0	Mm.211032	NM_172453	ENSMUSG00000041064	Pif1	4631410M14|AI449441	PIF1 5'-to-3' DNA helicase	protein-coding	0.0	2.0	0.5	0.0	0.0	2.0
Merged-chr16-97466700-2	chr16	97466200	97467200	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	-3794.0	NR_003520	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-69205376-1	chr10	69204876	69205876	+	646.0	f0_balb.idr	Intergenic	Intergenic	-3176.0	NM_001252636	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43391531-2	chr4	43391031	43392031	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037709, intron 1 of 11)	B1_Mur1|SINE|Alu	9549.0	NM_001037709	100213.0	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	5.5	17.0	11.0	3.0	15.0	8.0
Merged-chr7-43665973-2	chr7	43665473	43666473	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-5812.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83909099-2	chr17	83908599	83909599	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54681.0	NR_155491	320021.0	Mm.379475	NR_155490		C430042M11Rik	-	RIKEN cDNA C430042M11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90477601-1	chr3	90477101	90478101	+	646.0	f1_c57bl6.idr	intron (NM_026374, intron 3 of 13)	B1F1|SINE|Alu	1400.0	NM_026374	67781.0	Mm.227258	NM_026374	ENSMUSG00000001016	Ilf2	6230405A16Rik|TEG-267|Tex261|Tex267	interleukin enhancer binding factor 2	protein-coding	10.5	7.5	0.5	8.0	3.0	2.0
Merged-chr15-58747163-2	chr15	58746663	58747663	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76264.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120129007-2	chr8	120128507	120129507	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172286, intron 1 of 12)	B3A|SINE|B2	14855.0	NM_001163761	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129696097-3	chr4	129695625	129696625	+	646.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356378, intron 1 of 9)	intron (NM_001356378, intron 1 of 9)	720.0	NM_199305	230770.0	Mm.257157	NM_199305	ENSMUSG00000053730	Tmem39b	6330509E05Rik|BC037095	transmembrane protein 39b	protein-coding	16.5	35.0	14.0	12.0	38.0	23.5
Merged-chr1-157313649-1	chr1	157313149	157314149	+	646.0	f0_balb.idr	intron (NM_177644, intron 1 of 17)	A-rich|Low_complexity|Low_complexity	-98703.0	NR_027984	69953.0	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	4.5	6.5	1.5	1.0	2.0	3.5
Merged-chr4-138980996-1	chr4	138980496	138981496	+	646.0	f0_c57.idr	intron (NM_029857, intron 2 of 16)	ORR1F|LTR|ERVL-MaLR	8091.0	NM_029857	77056.0	Mm.122336	NM_029857	ENSMUSG00000041143	Tmco4	4632413C14Rik|AI430825	transmembrane and coiled-coil domains 4	protein-coding	47.5	66.5	67.0	0.0	0.5	4.0
Merged-chr3-157717668-3	chr3	157717166	157718166	+	646.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150774.0	NM_011196	19218.0	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101347613-1	chr7	101347113	101348113	+	646.0	f1_c57bl6.idr	promoter-TSS (NM_001040111)	promoter-TSS (NM_001040111)	-456.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	13.0	5.5	19.5	11.5	26.5	23.5
Merged-chr10-28380385-3	chr10	28379870	28380870	+	646.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359356, intron 6 of 30)	intron (NM_001359356, intron 6 of 30)	-287990.0	NM_001305663	210757.0	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83999079-2	chr8	83998602	83999602	+	646.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081415, exon 2 of 5)	exon (NM_001081415, exon 2 of 5)	1430.0	NM_001081415	666704.0	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	0.0	0.5	0.0	1.5	13.0	3.5
Merged-chr4-148557856-1	chr4	148557356	148558356	+	646.0	f1_balb.idr	promoter-TSS (NM_016699)	promoter-TSS (NM_016699)	-563.0	NM_016699	50912.0	Mm.266635	NM_016699	ENSMUSG00000017264	Exosc10	PM-Scl|PM/Scl-100|Pmscl2|RRP6|p2|p3|p4	exosome component 10	protein-coding	28.5	35.0	32.0	24.5	36.5	29.0
Merged-chr3-100686897-1	chr3	100686397	100687397	+	646.0	f1_balb.idr	Intergenic	Intergenic	-1424.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67095552-1	chr15	67095052	67096052	+	646.0	f0_balb.idr	Intergenic	Intergenic	81330.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	2.0	6.0	2.0	8.0	6.0	2.5
Merged-chr3-145115495-2	chr3	145114995	145115995	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3094.0	NM_001162539	52184.0	Mm.259105	NM_025714	ENSMUSG00000028256	Odf2l	4733401D09Rik|9630045K08Rik|D3Ertd250e	outer dense fiber of sperm tails 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19309898-2	chr3	19309398	19310398	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122759, intron 1 of 12)	intron (NM_001122759, intron 1 of 12)	1424.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19846086-2	chr7	19845586	19846586	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5917.0	NM_001270489	100502736.0	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136408059-1	chr6	136407559	136408559	+	646.0	f1_c57bl6.idr	intron (NM_001201390, intron 1 of 1)	intron (NM_001201390, intron 1 of 1)	7510.0	NM_001201390	100502936.0	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	2.5	6.5	0.0	6.5	0.0	4.0
Merged-chr12-73340994-3	chr12	73340471	73341471	+	646.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037717, intron 8 of 15)	intron (NM_001037717, intron 8 of 15)	54123.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	12.5	31.5	6.0	5.5	7.5	7.5
Merged-chr8-123064608-2	chr8	123064108	123065108	+	646.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153176)	promoter-TSS (NM_153176)	-900.0	NM_153176	234847.0	Mm.292075	NM_153176	ENSMUSG00000000738	Spg7	AI452278|AU015315|Cmar|PGN	SPG7, paraplegin matrix AAA peptidase subunit	protein-coding	2.5	0.0	0.0	0.0	0.0	1.0
Merged-chr10-122055744-2	chr10	122055244	122056244	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8429.0	NM_001081037	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115381994-2	chr11	115381494	115382494	+	646.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080929)	promoter-TSS (NM_001080929)	78.0	NM_001080929	237988.0	Mm.102872	NM_001080929	ENSMUSG00000050910	Cdr2l	D030068L24Rik|Gm21	cerebellar degeneration-related protein 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171440478-2	chr1	171439978	171440978	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172647, intron 1 of 9)	intron (NM_172647, intron 1 of 9)	2917.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55371136-2	chr13	55370636	55371636	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360714, intron 1 of 14)	intron (NM_001360714, intron 1 of 14)	1404.0	NM_016758	51791.0	Mm.1426	NM_016758	ENSMUSG00000052087	Rgs14	RPIP1	regulator of G-protein signaling 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12371013-2	chr17	12370513	12371513	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	-7596.0	NM_008877	18815.0	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121438705-2	chr5	121438205	121439205	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172722, intron 21 of 23)	intron (NM_172722, intron 21 of 23)	13769.0	NM_026129	67397.0	Mm.154570	NM_026129	ENSMUSG00000029616	Erp29	1200015M03Rik|2810446M09Rik|AW209030|Erp28|Erp31|PDI-Db	endoplasmic reticulum protein 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147464008-2	chr4	147463508	147464508	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	Lx8|LINE|L1	-89269.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158115207-2	chr2	158114707	158115707	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23410.0	NR_040609	72340.0	Mm.443395	NR_040609	ENSMUSG00000100860	2010009K17Rik	-	RIKEN cDNA 2010009K17 gene	ncRNA	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr14-61557633-2	chr14	61557133	61558133	+	646.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025697)	promoter-TSS (NM_025697)	-747.0	NM_001310603	66674.0	Mm.282706	NM_025697	ENSMUSG00000021930	Spryd7	6330409N04Rik|Clld6	SPRY domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-74207252-1	chr18	74206752	74207752	+	646.0	f1_balb.idr	intron (NM_001164355, intron 1 of 6)	RMER30|DNA|hAT-Charlie	566.0	NM_001164355	66468.0	Mm.283406	NM_025581	ENSMUSG00000036223	Ska1	2810433K01Rik|AV117428	spindle and kinetochore associated complex subunit 1	protein-coding	0.0	4.5	6.0	5.5	0.0	1.0
Merged-chr11-84824509-2	chr11	84824009	84825009	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177564, intron 2 of 6)	URR1B|DNA|hAT-Charlie	4494.0	NM_177564	192970.0	Mm.192213	NM_177564	ENSMUSG00000034449	Dhrs11	-	dehydrogenase/reductase (SDR family) member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170206492-1	chr2	170205992	170206992	+	646.0	f0_balb.idr	Intergenic	Intergenic	-63817.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.0	0.0	0.0	3.5	4.5	0.5
Merged-chr3-135478439-2	chr3	135477939	135478939	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7172.0	NM_027288	110173.0	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41358121-1	chr13	41357621	41358621	+	646.0	f0_balb.idr	intron (NM_001111324, intron 2 of 7)	intron (NM_001111324, intron 2 of 7)	880.0	NM_017464	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-47366454-1	chr18	47365954	47366954	+	646.0	f0_balb.idr	intron (NM_001311097, intron 1 of 17)	CpG	2414.0	NM_018744	20358.0	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	2.5	0.0	0.0	0.0	0.5	3.5
Merged-chr5-125274913-2	chr5	125274413	125275413	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	66181.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37656155-1	chr9	37655655	37656655	+	646.0	f0_balb.idr	intron (NM_025289, intron 1 of 8)	intron (NM_025289, intron 1 of 8)	1157.0	NM_025289	21376.0	Mm.28689	NM_025289	ENSMUSG00000011114	Tbrg1	AA408552|AA409675|Niam|Tb-5|mFLJ00213	transforming growth factor beta regulated gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84755142-2	chr15	84754641	84755641	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205334, intron 6 of 12)	intron (NM_001205334, intron 6 of 12)	-34875.0	NR_040347	328576.0	Mm.400211	NR_040347	ENSMUSG00000116396	Gm20556	A430075N02	predicted gene, 20556	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-89200047-1	chr9	89199547	89200547	+	646.0	f0_balb.idr	intron (NM_007534, intron 1 of 1)	B2_Mm2|SINE|B2	774.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-12277896-2	chr12	12277396	12278396	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	15757.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41304873-1	chr19	41304373	41305373	+	646.0	f1_balb.idr	intron (NM_031376, intron 9 of 16)	intron (NM_031376, intron 9 of 16)	-40869.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	12.0	7.5	4.5	1.0	4.0	6.0
Merged-chr2-27368070-2	chr2	27367570	27368570	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	59538.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-33670969-1	chr8	33670469	33671469	+	646.0	f1_c57bl6.idr	intron (NM_010344, intron 3 of 12)	intron (NM_010344, intron 3 of 12)	17731.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	24.0	14.0	18.5	0.0	3.0	2.0
Merged-chr14-67806570-1	chr14	67806070	67807070	+	646.0	f1_balb.idr	intron (NM_177780, intron 23 of 51)	intron (NM_177780, intron 23 of 51)	53175.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	10.0	11.0	4.5	2.5	3.0	11.0
Merged-chr15-98723173-2	chr15	98722673	98723673	+	646.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153518, exon 8 of 8)	3' UTR (NM_153518, exon 8 of 8)	4454.0	NM_001357893	66120.0	Mm.30729	NM_024169	ENSMUSG00000003355	Fkbp11	1110002O23Rik|FKBP-11	FK506 binding protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114578644-2	chr11	114578144	114579144	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89899.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-11230517-1	chr12	11230017	11231017	+	646.0	f0_balb.idr	Intergenic	Intergenic	-21569.0	NM_019544	56184.0	Mm.117113	NM_019544	ENSMUSG00000047002	Msgn1	Msgn|pMsgn1	mesogenin 1	protein-coding	0.0	2.0	2.0	3.0	4.0	7.0
Merged-chr2-147190084-1	chr2	147189584	147190584	+	646.0	f1_balb.idr	intron (NR_030769, intron 1 of 5)	intron (NR_030769, intron 1 of 5)	2660.0	NR_108091	78068.0	Mm.261511	NR_108091	ENSMUSG00000053545	6430503K07Rik	-	RIKEN cDNA 6430503K07 gene	ncRNA	0.0	0.0	3.5	2.0	0.0	0.0
Merged-chr13-24960190-3	chr13	24959687	24960687	+	646.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008156, intron 8 of 25)	intron (NM_008156, intron 8 of 25)	17035.0	NM_008156	14756.0	Mm.291831	NM_008156	ENSMUSG00000021340	Gpld1	6330541J12Rik|AW546131	glycosylphosphatidylinositol specific phospholipase D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-123905940-1	chr1	123905440	123906440	+	646.0	f0_balb.idr	intron (NM_199021, intron 1 of 25)	intron (NM_199021, intron 1 of 25)	139619.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	18.0	20.0	26.5	4.0	20.0	16.0
Merged-chr5-144312458-3	chr5	144311974	144312974	+	646.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025833, intron 3 of 13)	Tigger6a|DNA|TcMar-Tigger	35413.0	NR_040432	100504231.0	Mm.441035	NR_040432	ENSMUSG00000086894	Gm15708	-	predicted gene 15708	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53272665-2	chr19	53272165	53273165	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	-17460.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95799342-1	chr15	95798842	95799842	+	646.0	f0_balb.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	8499.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-85804400-2	chr16	85803900	85804900	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1287.0	NM_009621	11504.0	Mm.1421	NM_009621	ENSMUSG00000022893	Adamts1	ADAM-TS1|ADAMTS|ADAMTS-1|C3-C5|METH-1|METH1	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-167335908-2	chr1	167335408	167336408	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-14083.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152842917-2	chr2	152842417	152843417	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-5047.0	NM_001141975	72119.0	Mm.407737	NM_028109	ENSMUSG00000027469	Tpx2	2610005B21Rik|DIL2|REPP86|p100	TPX2, microtubule-associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91366962-2	chr1	91366462	91367462	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173395, intron 1 of 7)	intron (NM_173395, intron 1 of 7)	532.0	NM_173395	227358.0	Mm.389157	NM_173395	ENSMUSG00000047443	Erfe	4832406C22|Fam132b|myonectin	erythroferrone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55465388-2	chr12	55464888	55465888	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27259.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-56898411-2	chr14	56897911	56898911	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177627, intron 2 of 2)	RMER6A|LTR|ERVK	11568.0	NM_001360643	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-68385961-2	chr2	68385461	68386461	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 5 of 17)	intron (NM_016866, intron 5 of 17)	86020.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125098495-2	chr5	125097995	125098995	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253905, intron 3 of 42)	intron (NM_001253905, intron 3 of 42)	80719.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-139067436-2	chr1	139066936	139067936	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166501, intron 9 of 21)	intron (NM_001166501, intron 9 of 21)	89779.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11480426-2	chr8	11479926	11480926	+	646.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_126558)	TTS (NR_126558)	-1927.0	NM_011227	19332.0	Mm.37632	NM_011227	ENSMUSG00000031504	Rab20	AA536966|D8Ertd350e	RAB20, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108999008-2	chr12	108998508	108999508	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 4 of 6)	intron (NM_177602, intron 4 of 6)	69209.0	NM_001163175	380785.0	Mm.342085	NM_001163175	ENSMUSG00000040867	Begain	BM948371|Gm897	brain-enriched guanylate kinase-associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88506510-2	chr15	88506010	88507010	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-93792.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128466777-3	chr2	128466272	128467272	+	645.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37421.0	NR_028590	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	6.5	26.0	8.5	0.0	10.0	5.5
Merged-chr19-61198708-3	chr19	61198209	61199209	+	645.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-22400.0	NM_001177513	633057.0	Mm.426097	NM_001177513	ENSMUSG00000094649	Gm7102	EG633057	predicted gene 7102	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-123230326-2	chr6	123229826	123230826	+	645.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190320, intron 1 of 4)	(TG)n|Simple_repeat|Simple_repeat	483.0	NM_001190321	56620.0	Mm.271782	NM_020001	ENSMUSG00000023349	Clec4n	Clec6a|Clecsf10|Nkcl	C-type lectin domain family 4, member n	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40113345-3	chr4	40112879	40113879	+	645.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29886.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167382532-3	chr2	167382007	167383007	+	645.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-33329.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3882997-2	chr19	3882497	3883497	+	645.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271496, intron 3 of 11)	RSINE1|SINE|B4	22233.0	NM_016921	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-17912937-3	chr14	17912438	17913438	+	645.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-68706.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	1.0	4.5	3.5	5.0	6.5
Merged-chr16-20517596-2	chr16	20517096	20518096	+	645.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_007889, intron 1 of 14)	intron (NM_007889, intron 1 of 14)	610.0	NM_007889	13544.0	Mm.247259	NM_007889	ENSMUSG00000003233	Dvl3	b2b2866Clo	dishevelled segment polarity protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-103326694-3	chr12	103326202	103327202	+	645.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 7 of 9)	MIR|SINE|MIR	11743.0	NM_001195726	100504156.0	Mm.425749	NM_001195726	ENSMUSG00000096753	Fam181a	EG544888	family with sequence similarity 181, member A	protein-coding	0.0	10.5	1.0	0.0	10.5	1.0
Merged-chr18-60736817-3	chr18	60736322	60737322	+	645.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	-3681.0	NM_001348102	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0.0	1.0	3.5	9.5	3.5	3.0
Merged-chr13-64250614-3	chr13	64250157	64251157	+	645.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045798, intron 1 of 2)	T-rich|Low_complexity|Low_complexity	1957.0	NR_045798	66503.0	Mm.443331	NR_045798	ENSMUSG00000097101	1810034E14Rik	-	RIKEN cDNA 1810034E14 gene	ncRNA	3.0	0.5	5.0	2.0	0.5	3.0
Merged-chr13-37740818-2	chr13	37740318	37741318	+	645.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85220.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	1.0	1.0	1.5	0.0	0.5
Merged-chr18-53855132-4	chr18	53854649	53855649	+	645.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6964.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-116994514-2	chr8	116994014	116995014	+	645.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1065.0	NM_026572	68133.0	Mm.258462	NM_026572	ENSMUSG00000034424	Gcsh	1100001L02Rik|5730591C18Rik	glycine cleavage system protein H (aminomethyl carrier)	protein-coding	0.0	6.5	0.0	0.0	0.5	0.0
Merged-chr11-34122215-2	chr11	34121715	34122715	+	645.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23661.0	NR_155520	76874.0	Mm.437529	NR_155520		4930469K13Rik	-	RIKEN cDNA 4930469K13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-24313378-2	chr9	24312878	24313878	+	645.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_175678, intron 9 of 9)	intron (NM_175678, intron 9 of 9)	189762.0	NM_001359948	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16873435-2	chr7	16872952	16873952	+	645.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_152128, intron 1 of 1)	B1_Mus1|SINE|Alu	1434.0	NR_152128	320950.0	Mm.420078	NR_152128	ENSMUSG00000097842	9330104G04Rik	-	RIKEN cDNA 9330104G04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-106557192-2	chr7	106556696	106557696	+	645.75	f0_balb.idr|f1_balb.idr	Intergenic	Lx9|LINE|L1	87449.0	NM_001277179	434223.0	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	7.5	2.5	3.5	4.0	12.5	17.5
Merged-chr17-24158230-2	chr17	24157699	24158699	+	645.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_172935, exon 6 of 11)	exon (NM_172935, exon 6 of 11)	5534.0	NM_172935	245847.0	Mm.87319	NM_172935	ENSMUSG00000036820	Amdhd2	5730457F11Rik	amidohydrolase domain containing 2	protein-coding	0.0	1.0	0.0	0.0	0.0	1.0
Merged-chr18-52599868-3	chr18	52599364	52600364	+	645.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16051.0	NM_025749	66758.0	Mm.251599	NM_025749	ENSMUSG00000046886	Zfp474	4933409D10Rik|Znf474	zinc finger protein 474	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116436326-3	chr3	116435831	116436831	+	645.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12299.0	NM_001173553	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102640012-3	chr5	102639508	102640508	+	645.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029270, intron 2 of 9)	intron (NM_029270, intron 2 of 9)	-128802.0	NM_001286468	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25427580-3	chr10	25427110	25428110	+	645.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013511, intron 1 of 19)	intron (NM_013511, intron 1 of 19)	19242.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0.0	1.5	1.0	1.0	1.5	1.5
Merged-chr11-44410157-2	chr11	44409657	44410657	+	645.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001303244, exon 5 of 8)	exon (NM_001303244, exon 5 of 8)	10094.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90778548-3	chr5	90778049	90779049	+	645.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6114.0	NM_019932	56744.0	Mm.332490	NM_019932	ENSMUSG00000029373	Pf4	Cxcl4|Scyb4	platelet factor 4	protein-coding	4.0	2.0	0.0	1.5	0.0	2.0
Merged-chr17-56279581-2	chr17	56279081	56280081	+	645.583374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025836, exon 8 of 8)	3' UTR (NM_025836, exon 8 of 8)	-2814.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-164053498-2	chr1	164052998	164053998	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011345, intron 8 of 13)	intron (NM_011345, intron 8 of 13)	5264.0	NM_011345	20339.0	Mm.5245	NM_011345	ENSMUSG00000026582	Sele	CD62E|E-selectin|ELAM-1|Elam|LECAM2	selectin, endothelial cell	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47935608-2	chr19	47935108	47936108	+	645.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-2104.0	NM_001163267	381229.0	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	0.0	8.5	0.5	0.0	8.5	0.5
Merged-chr11-77347504-2	chr11	77347004	77348004	+	645.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291190)	promoter-TSS (NM_001291190)	-776.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108103490-2	chr12	108102990	108103990	+	645.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75794.0	NM_028262	52690.0	Mm.159185	NM_028262	ENSMUSG00000056770	Setd3	2610102I01Rik|2610305M23Rik|6030490B17Rik|D12Ertd771e	SET domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19276033-2	chr7	19275533	19276533	+	645.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177691)	TTS (NM_177691)	4016.0	NM_177691	232941.0	Mm.134068	NM_177691	ENSMUSG00000030402	Ppm1n	A930002H20|C79127	protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative)	protein-coding	1.5	16.5	4.5	1.5	13.5	4.5
Merged-chr11-103068622-2	chr11	103068122	103069122	+	645.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008707, exon 12 of 12)	3' UTR (NM_008707, exon 12 of 12)	12326.0	NM_001361706	72469.0	Mm.264743	NM_152813	ENSMUSG00000020937	Plcd3	2610205J15Rik|mKIAA1964	phospholipase C, delta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32915842-2	chr2	32915342	32916342	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146119, intron 5 of 13)	intron (NM_146119, intron 5 of 13)	39708.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121759034-2	chr11	121758534	121759534	+	645.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56607.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	2.5	2.5	0.0	2.5	1.0	0.0
Merged-chr13-74022950-2	chr13	74022450	74023450	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_182839, intron 2 of 3)	intron (NM_182839, intron 2 of 3)	13531.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124933688-2	chr6	124933188	124934188	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145385, intron 4 of 8)	B1_Mus2|SINE|Alu	2300.0	NM_001170341	30853.0	Mm.29737	NM_145385	ENSMUSG00000030120	Mlf2	AI256856|AU018944|C77284	myeloid leukemia factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118244747-2	chr11	118244247	118245247	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	B3|SINE|B2	3845.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130223545-2	chr5	130223045	130224045	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027854, intron 1 of 6)	ID_B1|SINE|B4	1210.0	NM_027854	71667.0	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	10.5	17.0	1.0	11.0	16.0	2.0
Merged-chr15-99700211-2	chr15	99699711	99700711	+	645.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001289791, exon 10 of 10)	3' UTR (NM_001289791, exon 10 of 10)	-2076.0	NM_031842	83797.0	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	1.5	0.0	4.0	0.0	6.0	1.0
Merged-chr15-73756825-2	chr15	73756325	73757325	+	645.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001166389, exon 6 of 6)	exon (NM_001166389, exon 6 of 6)	8799.0	NM_008975	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128371753-2	chr2	128371253	128372253	+	645.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_028591)	TTS (NR_028591)	57598.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	23.5	41.5	21.5	13.5	48.0	35.0
Merged-chr10-56809568-2	chr10	56809068	56810068	+	645.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	377587.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-103922577-2	chr13	103922077	103923077	+	645.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1991.0	NM_001005868	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90472384-2	chr2	90471884	90472884	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 2 of 23)	intron (NM_008982, intron 2 of 23)	6790.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96382977-2	chr9	96382447	96383447	+	645.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18516.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0.0	9.5	3.5	4.0	4.5	2.5
Merged-chr15-58418714-2	chr15	58418214	58419214	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145959, intron 1 of 23)	intron (NM_145959, intron 1 of 23)	3246.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	3.5	6.0	0.5	0.0	0.5	1.5
Merged-chr2-3579626-2	chr2	3579126	3580126	+	645.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66561.0	NM_177647	227526.0	Mm.211455	NM_177647	ENSMUSG00000039496	Cdnf	9330140G23|Armetl1	cerebral dopamine neurotrophic factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-37346189-2	chr7	37345689	37346689	+	645.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	423563.0	NM_172385	243937.0	Mm.322505	NM_172385	ENSMUSG00000043456	Zfp536	9630010P11Rik|Znf536|mKIAA0390	zinc finger protein 536	protein-coding	0.0	5.5	0.0	1.0	0.0	0.0
Merged-chr10-25284123-2	chr10	25283623	25284623	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 2 of 7)	intron (NM_018747, intron 2 of 7)	15040.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-19971467-2	chr14	19970967	19971967	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285908, intron 1 of 3)	intron (NM_001285908, intron 1 of 3)	5226.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78328747-2	chr15	78328247	78329247	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358854, intron 2 of 14)	intron (NM_001358854, intron 2 of 14)	2757.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	0.0	3.0	7.0	9.5	6.0	1.5
Merged-chr6-17790990-2	chr6	17790490	17791490	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	(TCCC)n|Simple_repeat|Simple_repeat	41820.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105770991-2	chr3	105770491	105771491	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145541, intron 1 of 7)	intron (NM_145541, intron 1 of 7)	30390.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10244497-2	chr19	10243997	10244997	+	645.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_198114)	TTS (NM_198114)	-3749.0	NM_001033481	225908.0	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-88437082-2	chr12	88436582	88437582	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361598, intron 4 of 9)	intron (NM_001361598, intron 4 of 9)	-59759.0	NR_045888	71818.0	Mm.490789	NR_045888	ENSMUSG00000113434	3200001D21Rik	-	RIKEN cDNA 3200001D21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-110327229-2	chr13	110326729	110327729	+	645.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29943.0	NM_177713	238875.0	Mm.30533	NM_177713	ENSMUSG00000046006	Gapt	9830130M13Rik	Grb2-binding adaptor, transmembrane	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-39371217-2	chr3	39370717	39371717	+	645.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	484277.0	NM_183221	329628.0	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	0.0	0.5	1.0	0.0	3.0	0.0
Merged-chr10-80097481-2	chr10	80096981	80097981	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359637, intron 1 of 3)	intron (NM_001359637, intron 1 of 3)	3706.0	NM_001359635	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102243122-2	chr15	102242622	102243622	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011244, intron 3 of 9)	intron (NM_011244, intron 3 of 9)	3378.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59890953-2	chr10	59890453	59891453	+	645.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_019965, exon 3 of 9)	exon (NM_019965, exon 3 of 9)	11362.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59881063-3	chr2	59880541	59881541	+	645.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159636, intron 1 of 10)	Lx8|LINE|L1	1565.0	NM_001159636	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129826844-2	chr4	129826342	129827342	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	6134.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	4.0	36.5	12.5	10.0	23.5	26.0
Merged-chr11-49249404-2	chr11	49248904	49249904	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110149, intron 1 of 1)	intron (NM_001110149, intron 1 of 1)	-1148.0	NM_001110150	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6283947-2	chr19	6283447	6284447	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 2 of 4)	B4A|SINE|B4	7051.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-7661771-2	chr6	7661271	7662271	+	645.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	31411.0	NM_012055	27053.0	Mm.2942	NM_012055	ENSMUSG00000029752	Asns	-	asparagine synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-35789134-2	chr4	35788630	35789630	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175516, intron 1 of 2)	L1_Mus1|LINE|L1	56074.0	NM_001166001	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr1-167338748-2	chr1	167338248	167339248	+	645.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-11243.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55330678-2	chr19	55330178	55331178	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 3 of 8)	intron (NM_001360431, intron 3 of 8)	14621.0	NM_001293686	53611.0	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3334699-2	chr11	3334199	3335199	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178149, intron 5 of 5)	ID_B1|SINE|B4	3968.0	NM_178149	216505.0	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-51505851-2	chr1	51505351	51506351	+	645.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27452.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-82234405-2	chr16	82233905	82234905	+	645.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	1033708.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6547312-2	chr2	6546812	6547812	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310447, intron 10 of 11)	intron (NM_001310447, intron 10 of 11)	174350.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-65115794-2	chr6	65115294	65116294	+	645.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001355250, exon 24 of 24)	3' UTR (NM_001355250, exon 24 of 24)	28936.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-3361320-2	chr13	3360820	3361820	+	645.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-116983.0	NR_015522	76937.0	Mm.487240	NR_015522	ENSMUSG00000097709	2810429I04Rik	AI256682	RIKEN cDNA 2810429I04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73516606-2	chr2	73516106	73517106	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	12881.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49326876-2	chr13	49326376	49327376	+	645.383301	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14673.0	NM_001039179	76895.0	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	BICD cargo adaptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-43574539-2	chr16	43574039	43575039	+	645.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285805, intron 7 of 10)	intron (NM_001285805, intron 7 of 10)	-66116.0	NR_030576	100124467.0		NR_030576	ENSMUSG00000076372	Mir568	Mirn568|mmu-mir-568	microRNA 568	ncRNA	0.0	0.0	0.5	4.5	0.5	0.5
Merged-chr2-24357949-2	chr2	24357449	24358449	+	645.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9726.0	NM_001355231	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5951558-2	chr19	5951058	5952058	+	645.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 8 of 17)	intron (NM_001164057, intron 8 of 17)	12648.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150779930-2	chr2	150779430	150780430	+	645.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6866.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-85351237-1	chr10	85350737	85351737	+	645.25	f0_c57.idr	Intergenic	L3|LINE|CR1	-35577.0	NM_028709	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27189750-2	chr14	27189250	27190250	+	645.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	intron (NM_001289686, intron 2 of 12)	45757.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84427885-2	chr2	84427385	84428385	+	645.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2619.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-74268883-2	chr18	74268383	74269383	+	645.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357422, intron 1 of 14)	intron (NM_001357422, intron 1 of 14)	708.0	NM_001357422	17190.0	Mm.22522	NM_013594	ENSMUSG00000024561	Mbd1	Cxxc3|PCM1	methyl-CpG binding domain protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74934953-3	chr15	74934464	74935464	+	645.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_I-int|LTR|ERV1	-20087.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	9.0	29.5	17.0	2.5	5.0	4.5
Merged-chr17-21536927-4	chr17	21536432	21537432	+	645.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144515, intron 1 of 4)	RLTR19|LTR|ERVK	-1054.0	NR_131123	319870.0	Mm.488274	NR_131123	ENSMUSG00000097781	9330136K24Rik	-	RIKEN cDNA 9330136K24 gene	ncRNA	6.0	11.5	14.0	1.5	20.0	23.5
Merged-chr7-67246241-2	chr7	67245741	67246741	+	645.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 8 of 11)	B1_Mus2|SINE|Alu	23625.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3579930-3	chr19	3579449	3580449	+	645.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4200.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	0.5	6.5	2.0	6.0	8.5	4.0
Merged-chr18-32398813-2	chr18	32398313	32399313	+	645.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 1 of 17)	intron (NM_001360876, intron 1 of 17)	-20529.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84042630-3	chr8	84042176	84043176	+	645.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016671)	promoter-TSS (NM_016671)	-101.0	NM_016671	50931.0	Mm.38386	NM_016671	ENSMUSG00000005465	Il27ra	CRL1|IL-27R|Tccr|WSX-1|Wsx1|zcytor1	interleukin 27 receptor, alpha	protein-coding	4.5	5.5	5.5	0.5	2.0	4.0
Merged-chr1-132194905-4	chr1	132194401	132195401	+	645.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033250, intron 1 of 3)	intron (NM_001033250, intron 1 of 3)	-3187.0	NR_029777	723818.0		NR_029777	ENSMUSG00000065435	Mir135b	Mirn135b|mir-135b	microRNA 135b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23684160-2	chr11	23683660	23684660	+	645.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033654, intron 4 of 17)	B3A|SINE|B2	18184.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75793546-2	chr7	75793046	75794046	+	645.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-54792.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	6.5	1.5	16.0	4.5	1.5	13.5
Merged-chr5-101970128-5	chr5	101969591	101970591	+	645.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 4 of 66)	intron (NM_172882, intron 4 of 66)	99830.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	48.0	95.0	97.5	27.5	82.5	74.5
Merged-chr11-8612230-3	chr11	8611777	8612777	+	645.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	MLT1A0|LTR|ERVL-MaLR	52258.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31102750-2	chr3	31102250	31103250	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039090, intron 2 of 6)	intron (NM_001039090, intron 2 of 6)	7692.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-36265525-3	chr2	36265024	36266024	+	645.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	35098.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30629437-2	chr14	30628937	30629937	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3229.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38336524-2	chr6	38336024	38337024	+	645.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347122, exon 3 of 13)	exon (NM_001347122, exon 3 of 13)	18079.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106632139-1	chr1	106631639	106632639	+	645.0	f0_balb.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	82151.0	NM_009741	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97319843-2	chr3	97319343	97320343	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	91336.0	NM_146275	258272.0	Mm.377406	NM_146275	ENSMUSG00000051392	Olfr1402	MOR217-1	olfactory receptor 1402	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29702391-2	chr6	29701891	29702891	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301407, intron 1 of 7)	MTA_Mm|LTR|ERVL-MaLR	8177.0	NM_146173	232670.0	Mm.225289	NM_146173	ENSMUSG00000001763	Tspan33	1300010A20Rik|Pen	tetraspanin 33	protein-coding	0.0	0.0	2.0	0.0	1.0	0.0
Merged-chr10-86783248-2	chr10	86782748	86783748	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175331, intron 1 of 13)	intron (NM_175331, intron 1 of 13)	4243.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61487414-1	chr18	61486914	61487914	+	645.0	f1_balb.idr	Intergenic	Intergenic	-2807.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	0.0	8.0	7.0	14.0	21.0	8.5
Merged-chr6-8511641-2	chr6	8511141	8512141	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133236, intron 1 of 7)	intron (NM_133236, intron 1 of 7)	2041.0	NM_133236	170772.0	Mm.210787	NM_133236	ENSMUSG00000029638	Glcci1	2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1	glucocorticoid induced transcript 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-35381244-2	chr6	35380744	35381744	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50398.0	NR_040526	73409.0	Mm.69443	NR_040526	ENSMUSG00000107341	1700065J11Rik	-	RIKEN cDNA 1700065J11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46139162-2	chr8	46138662	46139662	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15016.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-24991260-2	chr19	24990760	24991760	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-8269.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	16.0	74.0	66.0	30.5	67.0	62.5
Merged-chr19-37019121-2	chr19	37018621	37019621	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93042.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-24920750-2	chr3	24920250	24921250	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-136744.0	NM_001326288	635702.0	Mm.448351	NM_001326288	ENSMUSG00000102758	Naaladl2	2810043G22Rik|EG635702|Gm1021	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding	0.0	1.5	0.0	0.0	0.0	2.0
Merged-chr15-100703201-2	chr15	100702701	100703701	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161768, intron 6 of 11)	intron (NM_001161768, intron 6 of 11)	-15281.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr16-90163387-2	chr16	90162887	90163887	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21150.0	NR_033476	100038709.0	Mm.484070	NR_033476		Gm10789	-	predicted gene 10789	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90841355-2	chr2	90840898	90841898	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-5757.0	NM_001317241	56428.0	Mm.28023	NM_019758	ENSMUSG00000027282	Mtch2	2310034D24Rik|4930539J07Rik|HSPC032	mitochondrial carrier 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49251597-2	chr7	49251097	49252097	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 1 of 37)	intron (NM_175272, intron 1 of 37)	5408.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89214883-1	chr3	89214383	89215383	+	645.0	f0_balb.idr	promoter-TSS (NM_013691)	promoter-TSS (NM_013691)	-297.0	NM_013691	21827.0	Mm.2114	NM_013691	ENSMUSG00000028047	Thbs3	TSP3|Thbs-3	thrombospondin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4215029-2	chr8	4214529	4215529	+	645.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_207203, exon 6 of 7)	exon (NM_207203, exon 6 of 7)	2283.0	NM_207203	73072.0	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr14-46153097-1	chr14	46152597	46153597	+	645.0	f0_balb.idr	Intergenic	Intergenic	69070.0	NR_002875	218963.0	Mm.282093	NR_002875		Gm1821	-	ubiquitin pseudogene	pseudo	4.0	3.5	0.5	6.5	5.0	3.0
Merged-chr7-45025717-1	chr7	45025217	45026217	+	645.0	f1_c57bl6.idr	Intergenic	Intergenic	6120.0	NM_001360133	20130.0	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	18.5	3.5	8.5	3.5	10.0	3.5
Merged-chr9-118878709-1	chr9	118878209	118879209	+	645.0	f1_c57bl6.idr	intron (NM_001113514, intron 12 of 13)	intron (NM_001113514, intron 12 of 13)	-47827.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr7-98801841-1	chr7	98801341	98802341	+	645.0	f1_c57bl6.idr	Intergenic	Intergenic	-33271.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	1.0	0.0	0.0	2.5	0.0	0.0
Merged-chr7-102010262-2	chr7	102009762	102010762	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133947, intron 18 of 24)	intron (NM_133947, intron 18 of 24)	7893.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96712906-1	chr9	96712406	96713406	+	645.0	f0_balb.idr	intron (NM_001359959, intron 2 of 2)	ID_B1|SINE|B4	6539.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152333955-1	chr3	152333455	152334455	+	645.0	f0_balb.idr	intron (NM_001162375, intron 3 of 13)	intron (NM_001162375, intron 3 of 13)	6452.0	NM_174868	215708.0	Mm.135018	NM_174868	ENSMUSG00000054942	Miga1	A930038D06|AI852168|C030011O14Rik|Fam73a|Mita1	mitoguardin 1	protein-coding	0.0	0.0	1.5	7.5	10.0	3.5
Merged-chr5-137768880-2	chr5	137768380	137769380	+	645.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029805)	TTS (NM_029805)	-10024.0	NM_001356989	69871.0	Mm.276058	NM_027242	ENSMUSG00000029725	Ppp1r35	2010007H12Rik|2010011D20Rik|AL024004	protein phosphatase 1, regulatory subunit 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-177759255-3	chr2	177758751	177759751	+	645.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243903)	promoter-TSS (NM_001243903)	-37.0	NM_001243903	626802.0	Mm.386029	NM_001243903	ENSMUSG00000078864	Gm14322	-	predicted gene 14322	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72151890-3	chr8	72151387	72152387	+	645.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001001491, exon 8 of 8)	3' UTR (NM_001001491, exon 8 of 8)	-9313.0	NM_023126	17274.0	Mm.162811	NM_023126	ENSMUSG00000003037	Rab8a	AA409338|Mel	RAB8A, member RAS oncogene family	protein-coding	13.5	17.0	8.5	6.5	22.0	17.0
Merged-chr10-86877953-2	chr10	86877453	86878453	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 45 of 68)	(CA)n|Simple_repeat|Simple_repeat	98948.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102224672-2	chr7	102224172	102225172	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_111938, intron 2 of 4)	intron (NR_111938, intron 2 of 4)	1644.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	1.0	0.0	0.0	0.5	0.0	0.0
Merged-chr8-105330225-2	chr8	105329725	105330725	+	645.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177699, exon 19 of 22)	exon (NM_177699, exon 19 of 22)	3861.0	NM_025486	66320.0	Mm.29990	NM_025486	ENSMUSG00000014856	Tmem208	1700006C06Rik|2610030K20Rik|Hspc171	transmembrane protein 208	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144588904-2	chr3	144588404	144589404	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053102, intron 2 of 4)	MTD|LTR|ERVL-MaLR	18477.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10033256-2	chr19	10032756	10033756	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153790, intron 8 of 10)	intron (NR_153790, intron 8 of 10)	-8292.0	NM_021890	60527.0	Mm.253875	NM_021890	ENSMUSG00000024664	Fads3	AI464531	fatty acid desaturase 3	protein-coding	0.0	0.0	0.0	0.5	10.5	2.0
Merged-chr10-44646167-2	chr10	44645667	44646667	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-187419.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84900901-2	chr8	84900401	84901401	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1027.0	NM_010635	16596.0	Mm.4847	NM_010635	ENSMUSG00000054191	Klf1	Eklf|Nan	Kruppel-like factor 1 (erythroid)	protein-coding	2.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157132311-2	chr2	157131811	157132811	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001139520, intron 1 of 16)	B4A|SINE|B4	2911.0	NM_001139520	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-109053904-2	chr9	109053404	109054404	+	645.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026381)	promoter-TSS (NM_026381)	-962.0	NM_026381	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-194984281-1	chr1	194983781	194984781	+	645.0	f0_balb.idr	Intergenic	Intergenic	-7322.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60734800-1	chr18	60734300	60735300	+	645.0	f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	-1659.0	NM_001348102	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	13.5	16.0	19.5	17.5	28.5	23.0
Merged-chr2-72038392-3	chr2	72037899	72038899	+	645.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204167, intron 3 of 5)	intron (NM_001204167, intron 3 of 5)	-16218.0	NM_001355478	56508.0	Mm.196153	NM_019688	ENSMUSG00000049044	Rapgef4	1300003D15Rik|5730402K07Rik|6330581N18Rik|EPAC 2|Epac-2|Epac2|mKIAA4040	Rap guanine nucleotide exchange factor (GEF) 4	protein-coding	7.0	0.0	2.5	0.0	2.0	0.0
Merged-chr9-9129593-2	chr9	9129093	9130093	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027823, intron 3 of 22)	intron (NM_027823, intron 3 of 22)	-106695.0	NR_045754	100579151.0	Mm.412450	NR_045754	ENSMUSG00000085253	Gm16833	-	predicted gene, 16833	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35090468-1	chr17	35089968	35090968	+	645.0	f1_c57bl6.idr	intron (NM_178592, intron 2 of 19)	intron (NM_178592, intron 2 of 19)	1177.0	NM_178592	193742.0	Mm.43745	NM_178592	ENSMUSG00000007036	Abhd16a	AI326074|Bat-5|Bat5|D17H6S82E|NG26	abhydrolase domain containing 16A	protein-coding	5.0	30.0	25.5	0.0	35.0	21.0
Merged-chr1-30947919-3	chr1	30947371	30948371	+	645.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011200, intron 1 of 5)	intron (NM_011200, intron 1 of 5)	1839.0	NR_002688	433406.0	Mm.389003	NR_002688		Gm13363	-	predicted gene 13363	pseudo	0.5	16.5	6.0	6.0	22.0	6.0
Merged-chr1-120529837-2	chr1	120529337	120530337	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	-24813.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	1.0	0.5	2.0	1.5	0.0	1.0
Merged-chr9-107295696-2	chr9	107295184	107296184	+	645.0	f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_009895)	promoter-TSS (NM_009895)	-975.0	NM_009895	12700.0	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	1.0	7.0	4.5	2.5	3.5	3.5
Merged-chr1-193580658-1	chr1	193580158	193581158	+	645.0	f1_c57bl6.idr	Intergenic	Intergenic	-73128.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	0.0	2.5	1.5	0.0	0.0	2.5
Merged-chr2-26484716-2	chr2	26484216	26485216	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 3 of 33)	intron (NM_008714, intron 3 of 33)	-14597.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50363123-3	chr15	50362625	50363625	+	645.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	525924.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81261761-1	chr7	81261261	81262261	+	645.0	f0_balb.idr	intron (NM_008803, intron 1 of 21)	intron (NM_008803, intron 1 of 21)	47957.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25203256-1	chr12	25202756	25203756	+	645.0	f1_c57bl6.idr	Intergenic	Intergenic	74082.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	40.0	46.5	35.0	69.5	64.5	88.0
Merged-chr17-77968811-2	chr17	77968311	77969311	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-231437.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72166906-2	chr6	72166406	72167406	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-43709.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70572677-2	chr8	70572178	70573178	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	-21803.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	0.0	5.0	0.0	3.0	6.0	3.0
Merged-chr3-81264854-1	chr3	81264354	81265354	+	645.0	f0_balb.idr	Intergenic	L1_Rod|LINE|L1	228438.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	9.0	10.5	5.0	1.5	7.5	0.0
Merged-chr3-145108742-2	chr3	145108242	145109242	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9636.0	NM_178697	229933.0	Mm.331420	NM_178697	ENSMUSG00000036960	Clca2	4732440A06|AI586120|Clca5	chloride channel accessory 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32454264-2	chr2	32453764	32454764	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194335, intron 1 of 1)	intron (NM_194335, intron 1 of 1)	-2794.0	NM_146118	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-36213306-2	chr2	36212806	36213806	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-17120.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91729185-2	chr2	91728685	91729685	+	645.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172669)	promoter-TSS (NM_172669)	-953.0	NM_172669	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40700130-2	chr19	40699628	40700628	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	40358.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	1.5	13.5	5.0	0.0	8.0	5.5
Merged-chr5-62523270-2	chr5	62522770	62523770	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	242907.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-102692651-2	chr13	102692151	102693151	+	645.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008533)	promoter-TSS (NM_008533)	-896.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	57.0	168.5	118.0	57.0	175.0	119.0
Merged-chr16-8835466-2	chr16	8834966	8835966	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081400, intron 2 of 3)	RSINE1|SINE|B4	5366.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-5202330-2	chr16	5201830	5202830	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027804, intron 1 of 8)	B4A|SINE|B4	1682.0	NM_013796	27426.0	Mm.215641	NM_013796	ENSMUSG00000023143	Nagpa	AI596180|UCE	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124824022-2	chr6	124823522	124824522	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013700, intron 6 of 19)	intron (NM_013700, intron 6 of 19)	5462.0	NM_001326594	22225.0	Mm.3571	NM_013700	ENSMUSG00000038429	Usp5	AA407472|ISOT|ISOT-1|Ucht	ubiquitin specific peptidase 5 (isopeptidase T)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-6047055-2	chr6	6046555	6047555	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177572, intron 15 of 17)	intron (NM_001177572, intron 15 of 17)	-69662.0	NR_040255	72249.0	Mm.443268	NR_040255	ENSMUSG00000085416	1700019G24Rik	-	RIKEN cDNA 1700019G24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-97676792-2	chr1	97676292	97677292	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14774.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20709290-2	chr14	20708790	20709790	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027996, intron 1 of 25)	intron (NM_027996, intron 1 of 25)	1738.0	NM_001252082	268721.0	Mm.275082	NM_027996	ENSMUSG00000021819	Zswim8	2310021P13Rik|4832404P21Rik|Kiaa0913|mKIAA0913	zinc finger SWIM-type containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71270865-2	chr8	71270365	71271365	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029621, intron 1 of 10)	intron (NM_029621, intron 1 of 10)	1725.0	NM_001163042	76478.0	Mm.27355	NM_029621	ENSMUSG00000035439	Haus8	2410004L22Rik|Hice1	4HAUS augmin-like complex, subunit 8	protein-coding	3.5	0.0	1.5	6.5	0.5	2.0
Merged-chr6-134253855-2	chr6	134253358	134254358	+	645.0	f0_balb.idr|f1_balb.idr	intron (NM_001303102, intron 6 of 8)	intron (NM_001303102, intron 6 of 8)	-142471.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	4.5	3.0	6.5	11.0	8.0	0.0
Merged-chr2-128813519-2	chr2	128813019	128814019	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4784.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	6.5	7.5	1.5	6.5	2.5	2.5
Merged-chr16-21644733-2	chr16	21644233	21645233	+	645.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001285894)	TTS (NM_001285894)	49932.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80382726-1	chr11	80382226	80383226	+	645.0	f0_c57.idr	promoter-TSS (NM_011751)	promoter-TSS (NM_011751)	-553.0	NM_001130169	22680.0	Mm.401332	NM_011751	ENSMUSG00000017421	Zfp207	8430401D15Rik|BuGZ|Zep|Znf207	zinc finger protein 207	protein-coding	20.5	40.0	21.0	22.0	38.0	19.5
Merged-chr17-46467463-2	chr17	46466963	46467963	+	645.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001162864, exon 13 of 15)	exon (NM_001162864, exon 13 of 15)	20212.0	NM_001162864	106763.0	Mm.297613	NM_175351	ENSMUSG00000015599	Ttbk1	AU017937|AW048023|C330008L01Rik	tau tubulin kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-59058486-2	chr18	59057986	59058986	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-3895.0	NR_033764	225583.0	Mm.209711	NM_173759	ENSMUSG00000050875	A730017C20Rik	-	RIKEN cDNA A730017C20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66141700-1	chr5	66141200	66142200	+	645.0	f0_balb.idr	intron (NM_001127382, intron 2 of 7)	RMER15|LTR|ERVL	9278.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	13.0	12.5	19.0	16.5	25.5	16.0
Merged-chr6-71487056-3	chr6	71486557	71487557	+	645.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6820.0	NM_009543	22644.0	Mm.422969	NM_009543	ENSMUSG00000052656	Rnf103	AW146237|AW212918|Zfp103|kf-1	ring finger protein 103	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43890398-3	chr5	43889941	43890941	+	645.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	21632.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	2.0	8.0	7.0	2.0	7.5	0.0
Merged-chr13-48574210-2	chr13	48573710	48574710	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35938.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71597867-1	chr17	71597367	71598367	+	645.0	f1_balb.idr	intron (NR_027953, intron 1 of 2)	intron (NR_027953, intron 1 of 2)	414.0	NR_027953	68789.0	Mm.75202	NR_015549	ENSMUSG00000085492	Trmt61b	1110039F03Rik|623451|Gm6431	tRNA methyltransferase 61B	ncRNA	45.0	106.5	71.5	43.0	91.5	105.0
Merged-chr9-21012495-2	chr9	21011995	21012995	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3445.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92467620-1	chr5	92467120	92468120	+	645.0	f0_c57.idr	intron (NM_007644, intron 2 of 11)	intron (NM_007644, intron 2 of 11)	9063.0	NR_105843	102466159.0		NR_105843	ENSMUSG00000099160	Mir6415	Gm27714|mmu-mir-6415	microRNA 6415	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55364079-2	chr13	55363578	55364578	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1295.0	NM_025828	66890.0	Mm.38868	NM_025828	ENSMUSG00000021484	Lman2	1110003H06Rik|1300009F09Rik|AA408240|AL023023|AU040819|GP36B|VIP36	lectin, mannose-binding 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40756063-1	chr9	40755563	40756563	+	645.0	f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	B2_Mm2|SINE|B2	-45210.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	1.5	3.0	4.0	6.0	3.5	8.5
Merged-chr7-101902900-2	chr7	101902400	101903400	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081679, intron 1 of 3)	B3|SINE|B2	885.0	NM_001282088	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21335932-4	chr16	21335427	21336427	+	644.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-2571.0	NR_131983	76222.0	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35046295-5	chr12	35045763	35046763	+	644.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001014973)	promoter-TSS (NM_001014973)	-926.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	103.5	212.0	129.5	39.5	181.0	134.0
Merged-chr16-65377317-3	chr16	65376818	65377818	+	644.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143311.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-3944102-3	chr10	3943610	3944610	+	644.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033253, intron 10 of 15)	intron (NM_001033253, intron 10 of 15)	-28965.0	NM_001170786	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-18210874-2	chr10	18210362	18211362	+	644.875	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_001195036)	promoter-TSS (NM_001195036)	28.0	NM_001195036	100045792.0	Mm.380617	NM_001195036	ENSMUSG00000071392	Ect2l	C330021H03Rik|Gm10331	epithelial cell transforming sequence 2 oncogene-like	protein-coding	3.0	1.5	3.0	1.0	12.5	1.0
Merged-chr15-75549054-2	chr15	75548554	75549554	+	644.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17594.0	NM_001135689	23934.0	Mm.22154	NM_011837	ENSMUSG00000022577	Ly6h	-	lymphocyte antigen 6 complex, locus H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43464808-2	chr4	43464308	43465308	+	644.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-10182.0	NM_007654	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96362967-2	chr9	96362453	96363453	+	644.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357213, intron 1 of 7)	intron (NM_001357213, intron 1 of 7)	762.0	NM_001357213	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0.0	29.0	11.0	3.5	3.5	3.0
Merged-chr17-12996502-2	chr17	12996002	12997002	+	644.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3963.0	NM_175394	60532.0	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120011894-2	chr11	120011394	120012394	+	644.833313	f1_balb.idr|f1_c57bl6.idr	exon (NM_001198785, exon 11 of 14)	exon (NM_001198785, exon 11 of 14)	-2873.0	NR_037225	100526518.0		NR_037225	ENSMUSG00000105524	Mir3065	mir-3065|mmu-mir-3065	microRNA 3065	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114836840-3	chr6	114836378	114837378	+	644.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	84943.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45465160-2	chr7	45464660	45465660	+	644.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_007527, intron 4 of 5)	intron (NM_007527, intron 4 of 5)	1738.0	NM_007527	12028.0	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120887349-3	chr11	120886844	120887844	+	644.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027745, intron 10 of 18)	intron (NM_027745, intron 10 of 18)	45528.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-149376056-4	chr5	149375593	149376593	+	644.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35656.0	NM_027519	70717.0	Mm.252139	NM_027519	ENSMUSG00000029659	Medag	6330406I15Rik|Awms3|MEDA-4|Meda4|mAWMS3	mesenteric estrogen dependent adipogenesis	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132639572-3	chr4	132639057	132640057	+	644.777771	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_010166, intron 1 of 17)	intron (NM_010166, intron 1 of 17)	511.0	NM_010166	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	21.5	40.0	25.0	17.5	27.5	25.5
Merged-chr17-71596993-3	chr17	71596413	71597413	+	644.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027953, intron 1 of 2)	intron (NR_027953, intron 1 of 2)	1368.0	NR_027953	68789.0	Mm.75202	NR_015549	ENSMUSG00000085492	Trmt61b	1110039F03Rik|623451|Gm6431	tRNA methyltransferase 61B	ncRNA	15.5	35.0	9.5	13.5	24.0	20.0
Merged-chr18-84103649-2	chr18	84103149	84104149	+	644.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15491.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28322494-2	chr7	28321994	28322994	+	644.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_013676, exon 14 of 30)	exon (NM_013676, exon 14 of 30)	-10448.0	NM_025616	66525.0	Mm.167913	NM_025616	ENSMUSG00000003438	Timm50	2810403L02Rik|AU015082|TIM50L	translocase of inner mitochondrial membrane 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64805355-2	chr5	64804855	64805855	+	644.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	1832.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25277300-2	chr8	25276800	25277800	+	644.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28970.0	NR_040352	74489.0	Mm.256468	NR_040352	ENSMUSG00000110140	5430421F17Rik	-	RIKEN cDNA 5430421F17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-19753686-2	chr15	19753186	19754186	+	644.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	568313.0	NR_155419	102639102.0	Mm.463245	NR_155419	ENSMUSG00000115803	Gm35496	-	predicted gene, 35496	ncRNA	0.0	1.5	1.5	2.0	1.0	2.0
Merged-chr16-25064112-2	chr16	25063612	25064612	+	644.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_040374, intron 1 of 2)	intron (NR_040374, intron 1 of 2)	4473.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-28039975-2	chr3	28039475	28040475	+	644.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 7 of 25)	intron (NM_008875, intron 7 of 25)	55804.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-103371955-3	chr12	103371472	103372472	+	644.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4922.0	NR_033587	68149.0	Mm.127378	NM_026580	ENSMUSG00000021203	Otub2	2010015L18Rik|4930586I02Rik|AI413508|AW557219|OTB2|OTU2	OTU domain, ubiquitin aldehyde binding 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120941094-3	chr9	120940594	120941594	+	644.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007614, intron 1 of 14)	L2|LINE|L2	7516.0	NM_001165902	12387.0	Mm.291928	NM_007614	ENSMUSG00000006932	Ctnnb1	Bfc|Catnb|Mesc	catenin (cadherin associated protein), beta 1	protein-coding	1.5	1.5	1.5	0.5	4.5	1.0
Merged-chr1-135131852-2	chr1	135131352	135132352	+	644.6999509999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177081)	promoter-TSS (NM_177081)	723.0	NR_153383	13924.0	Mm.4450	NM_007955		Ptprv	Esp|OST|OST-PTP	protein tyrosine phosphatase, receptor type, V	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66237573-2	chr14	66237073	66238073	+	644.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-23749.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47901951-3	chr19	47901435	47902435	+	644.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001738, intron 1 of 1)	intron (NM_001001738, intron 1 of 1)	17364.0	NM_001001738	414801.0	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	0.0	0.5	12.5	1.0	20.5	9.5
Merged-chr17-5601490-2	chr17	5600990	5601990	+	644.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	ORR1B1|LTR|ERVL-MaLR	108890.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48345020-2	chr17	48344520	48345520	+	644.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1381.0	NM_031254	83433.0	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64396391-3	chr5	64395877	64396877	+	644.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	71565.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	3.5	0.0	0.0	0.5	0.0	0.0
Merged-chr5-135968223-2	chr5	135967750	135968750	+	644.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001160366, exon 3 of 11)	exon (NM_001160366, exon 3 of 11)	6226.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	1.0	0.0	0.0	2.5	0.5	0.5
Merged-chr6-79958173-2	chr6	79957673	79958673	+	644.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-60704.0	NM_001282102	243499.0	Mm.483425	NM_178731	ENSMUSG00000052581	Lrrtm4	7530419J18Rik|A230052N11	leucine rich repeat transmembrane neuronal 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr5-139389310-2	chr5	139388810	139389810	+	644.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001038703)	promoter-TSS (NM_001038703)	-594.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-23572376-2	chr9	23571876	23572876	+	644.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	349300.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-3367382-2	chr10	3366882	3367882	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133485, intron 1 of 3)	intron (NM_133485, intron 1 of 3)	1232.0	NM_133485	76142.0	Mm.308126	NM_133485	ENSMUSG00000040653	Ppp1r14c	6330514J04Rik|KEPI	protein phosphatase 1, regulatory (inhibitor) subunit 14c	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-20140279-2	chr3	20139779	20140779	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355261, intron 4 of 7)	L1MD2|LINE|L1	14837.0	NM_001355261	27357.0	Mm.6375	NM_013755	ENSMUSG00000019528	Gyg	AU017667|GN1|Gyg1	glycogenin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21923526-2	chr9	21923026	21924026	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045606, intron 3 of 4)	intron (NR_045606, intron 3 of 4)	3762.0	NM_001253869	235043.0	Mm.253329	NM_178577	ENSMUSG00000040883	Tmem205	-	transmembrane protein 205	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41690120-2	chr10	41689620	41690620	+	644.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001358562, exon 4 of 48)	exon (NM_001358562, exon 4 of 48)	26343.0	NM_001358562	75973.0	Mm.228517	NM_029493	ENSMUSG00000075225	Ccdc162	5033413D22Rik|Ccdc162p|Gm29096|Gm61|Gm6976	coiled-coil domain containing 162	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5058556-2	chr11	5058056	5059056	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145216, intron 1 of 2)	intron (NM_145216, intron 1 of 2)	428.0	NM_145216	75668.0	Mm.374836	NM_145216	ENSMUSG00000034209	Rasl10a	2210403B10Rik|AI852688	RAS-like, family 10, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6486420-2	chr19	6485920	6486920	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 11 of 22)	intron (NM_001205234, intron 11 of 22)	56650.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29238244-2	chr17	29237744	29238744	+	644.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153166)	promoter-TSS (NM_153166)	-454.0	NM_001360239	240058.0	Mm.39905	NM_153166	ENSMUSG00000024008	Cpne5	A830083G22Rik	copine V	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118143860-2	chr11	118143360	118144360	+	644.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-14641.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73071266-2	chr17	73070766	73071766	+	644.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36719.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81455578-2	chr10	81455078	81456078	+	644.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17553.0	NM_001311127	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3512621-2	chr4	3512108	3513108	+	644.5	f0_c57.idr|f1_balb.idr	Intergenic	L1MB3|LINE|L1	-24482.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	18.0	36.0	25.5	31.5	16.5	23.0
Merged-chr11-9537923-2	chr11	9537423	9538423	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 47 of 61)	intron (NM_178259, intron 47 of 61)	345981.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127331325-2	chr10	127330848	127331848	+	644.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010296, exon 13 of 13)	exon (NM_010296, exon 13 of 13)	5706.0	NM_001359657	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91567623-2	chr16	91567123	91568123	+	644.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20529.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38659787-2	chr15	38659287	38660287	+	644.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-2117.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93487930-2	chr10	93487430	93488430	+	644.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010401)	promoter-TSS (NM_010401)	-838.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	17.0	9.0	8.5	24.5	46.0	34.0
Merged-chr11-117147263-2	chr11	117146763	117147763	+	644.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001166506, exon 8 of 16)	exon (NM_001166506, exon 8 of 16)	32091.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150748474-2	chr2	150747974	150748974	+	644.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172117)	promoter-TSS (NM_172117)	-607.0	NM_001355068	12497.0	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71955785-2	chr2	71955285	71956285	+	644.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25430.0	NM_001204167	56508.0	Mm.196153	NM_019688	ENSMUSG00000049044	Rapgef4	1300003D15Rik|5730402K07Rik|6330581N18Rik|EPAC 2|Epac-2|Epac2|mKIAA4040	Rap guanine nucleotide exchange factor (GEF) 4	protein-coding	3.0	9.0	4.0	1.5	0.0	1.5
Merged-chr17-84960154-2	chr17	84959654	84960654	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011151, intron 1 of 5)	B1F1|SINE|Alu	2153.0	NM_001159496	19043.0	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43578472-2	chr7	43577972	43578972	+	644.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-1114.0	NM_172482	210105.0	Mm.234422	NM_172482	ENSMUSG00000030469	Zfp719	8030458J18|9430094P17Rik|C630016O21Rik|mszf6	zinc finger protein 719	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-62685492-2	chr17	62684992	62685992	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010109, intron 1 of 3)	intron (NM_010109, intron 1 of 3)	195825.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90544003-2	chr2	90543503	90544503	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	36644.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-82864054-2	chr10	82863554	82864554	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042513, intron 2 of 14)	intron (NM_001042513, intron 2 of 14)	-2572.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	0.0	0.0	6.5	0.0	0.0	6.5
Merged-chr6-53571045-2	chr6	53570560	53571560	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 5 of 10)	intron (NM_001327821, intron 5 of 10)	-2314.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	17.0	66.5	56.0	8.5	43.5	30.0
Merged-chr6-42392877-2	chr6	42392377	42393377	+	644.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7361.0	NM_001001452	387514.0	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21613855-2	chr10	21613355	21614355	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_027968, intron 2 of 2)	intron (NR_027968, intron 2 of 2)	20710.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35005097-2	chr17	35004597	35005597	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011690, intron 6 of 29)	intron (NM_011690, intron 6 of 29)	4190.0	NM_011690	22321.0	Mm.28420	NM_011690	ENSMUSG00000007029	Vars	Bat6|D17H6S56E|G7a|Vars2	valyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33481441-2	chr16	33480941	33481941	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358570, intron 7 of 8)	intron (NM_001358570, intron 7 of 8)	-36888.0	NM_134251	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	1.0	2.0	0.0	0.0	1.0	0.0
Merged-chr15-88651065-2	chr15	88650565	88651565	+	644.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50763.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-65433380-2	chr6	65432880	65433880	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175524, intron 1 of 5)	intron (NM_175524, intron 1 of 5)	52086.0	NM_175524	243407.0	Mm.389758	NM_175524	ENSMUSG00000029917	C130060K24Rik	-	RIKEN cDNA C130060K24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100854392-2	chr7	100853892	100854892	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177073, intron 1 of 10)	intron (NM_177073, intron 1 of 10)	9021.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147959733-2	chr4	147959233	147960233	+	644.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	18838.0	NM_029841	77034.0	Mm.183076	NM_029841	ENSMUSG00000044496	2510039O18Rik	Kiaa2013	RIKEN cDNA 2510039O18 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4710871-2	chr12	4710371	4711371	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011365, intron 36 of 38)	intron (NM_011365, intron 36 of 38)	27512.0	NM_029107	74855.0	Mm.269534	NM_029107	ENSMUSG00000079177	Fam228a	4930417G10Rik	family with sequence similarity 228, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41358188-2	chr4	41357688	41358688	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355508, intron 1 of 6)	ID_B1|SINE|B4	6225.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71214337-2	chr17	71213837	71214837	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164885, intron 1 of 19)	intron (NM_001164885, intron 1 of 19)	9683.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	2.5	16.5	2.5	3.5	5.5	8.0
Merged-chr15-99120456-2	chr15	99119956	99120956	+	644.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17D2|LTR|ERVK	-6389.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-133033726-2	chr7	133033226	133034226	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	-18479.0	NM_001170744	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34584897-2	chr17	34584397	34585397	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010929, intron 25 of 29)	(TG)n|Simple_repeat|Simple_repeat	-4909.0	NM_134116	106512.0	Mm.26584	NM_134116	ENSMUSG00000034786	Gpsm3	AA960287|AGS4	G-protein signalling modulator 3 (AGS3-like, C. elegans)	protein-coding	0.0	0.0	2.5	0.0	0.0	0.0
Merged-chr2-167935212-2	chr2	167934712	167935712	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	T-rich|Low_complexity|Low_complexity	2885.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-106687597-2	chr14	106687089	106688089	+	644.466675	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-201069.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	2.5	1.5	6.5	5.5	4.0	4.0
Merged-chr5-140740898-2	chr5	140740398	140741398	+	644.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	(CA)n|Simple_repeat|Simple_repeat	16771.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61654884-2	chr11	61654384	61655384	+	644.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_027817, intron 1 of 4)	intron (NM_027817, intron 1 of 4)	1563.0	NM_027817	71520.0	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51497522-3	chr10	51496918	51497918	+	644.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013532)	TTS (NM_013532)	6520.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-12460355-3	chr4	12459860	12460860	+	644.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-288345.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136989985-2	chr6	136989482	136990482	+	644.375	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	35459.0	NM_023898	78600.0	Mm.290622	NM_023898	ENSMUSG00000064330	Pde6h	A930033D18Rik|PDEgamma	phosphodiesterase 6H, cGMP-specific, cone, gamma	protein-coding	1.5	12.0	19.0	8.0	4.5	11.0
Merged-chr3-87227055-4	chr3	87226563	87227563	+	644.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	36461.0	NM_030707	80891.0	Mm.45173	NM_030707	ENSMUSG00000015852	Fcrls	2810439C17Rik|9330158F12|FcRH2sc|Fcrh2|IFGP2|IgSR|MMAN-g|Msr2|moFcRH2sc	Fc receptor-like S, scavenger receptor	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr2-11218318-4	chr2	11217816	11218816	+	644.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	45934.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23765300-2	chr13	23764800	23765800	+	644.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_030609)	TTS (NM_030609)	1632.0	NM_030609	80838.0	Mm.480242	NM_030609	ENSMUSG00000049539	Hist1h1a	H1.1|H1a|H1f1|H1var3	histone cluster 1, H1a	protein-coding	2.5	4.0	1.0	2.5	4.5	1.0
Merged-chr18-36541645-3	chr18	36541119	36542119	+	644.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271547, intron 19 of 19)	intron (NM_001271547, intron 19 of 19)	13467.0	NM_001271545	240215.0	Mm.135463	NM_172830	ENSMUSG00000024485	Slc4a9	AE4|D630003B07|D630024F24Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 9	protein-coding	0.5	4.5	0.5	1.0	0.0	1.0
Merged-chr17-10856867-3	chr17	10856353	10857353	+	644.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317726, intron 1 of 6)	intron (NM_001317726, intron 1 of 6)	16494.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122739312-3	chr2	122738811	122739811	+	644.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019788, intron 1 of 4)	intron (NM_019788, intron 1 of 4)	806.0	NM_019788	18457.0	Mm.268921	NM_019788	ENSMUSG00000005804	Bloc1s6	BLOC-1|Pldn|Stx13bp1|pa	biogenesis of lysosomal organelles complex-1, subunit 6, pallidin	protein-coding	87.0	171.5	124.5	100.5	262.5	200.5
Merged-chr7-3800127-3	chr7	3799618	3800618	+	644.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289428, intron 12 of 12)	intron (NM_001289428, intron 12 of 12)	44933.0	NM_011089	18725.0	Mm.482470	NM_011089	ENSMUSG00000089942	Pira2	6M23	paired-Ig-like receptor A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128363409-1	chr2	128362909	128363909	+	644.333313	f0_balb.idr	intron (NR_028590, intron 1 of 2)	intron (NR_028590, intron 1 of 2)	65942.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	10.0	12.0	11.0	11.0	15.5	20.5
Merged-chr2-118200045-3	chr2	118199518	118200518	+	644.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56948.0	NM_027759	71313.0	Mm.85046	NM_027759	ENSMUSG00000027344	Fsip1	1700012M13Rik|4933432K11Rik	fibrous sheath-interacting protein 1	protein-coding	0.0	1.0	0.0	4.0	0.0	1.5
Merged-chr13-20220593-4	chr13	20220089	20221089	+	644.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 4 of 21)	intron (NM_080288, intron 4 of 21)	130082.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	7.5	8.0	18.0	6.5	7.5	17.0
Merged-chr5-139363197-3	chr5	139362692	139363692	+	644.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 3 of 4)	intron (NM_028469, intron 3 of 4)	6553.0	NR_029768	723898.0		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-31947676-3	chr12	31947166	31948166	+	644.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177993, intron 1 of 8)	B3|SINE|B2	2579.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	1.0	2.5	8.0	1.5	1.5	1.0
Merged-chr2-160673626-3	chr2	160673138	160674138	+	644.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009408, intron 3 of 20)	MTD|LTR|ERVL-MaLR	27741.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25107846-2	chr7	25107346	25108346	+	644.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163556, intron 5 of 13)	intron (NM_001163556, intron 5 of 13)	-10671.0	NR_105855	102465968.0		NR_105855	ENSMUSG00000098441	Mir6537	Gm27808|mmu-mir-6537	microRNA 6537	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49847490-4	chr11	49846970	49847970	+	644.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016961, intron 1 of 11)	intron (NM_016961, intron 1 of 11)	719.0	NM_016961	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55680224-2	chr14	55679724	55680724	+	644.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_145705, exon 6 of 9)	exon (NM_145705, exon 6 of 9)	1593.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101699072-2	chr4	101698572	101699572	+	644.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-18335.0	NM_001122899	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154093501-2	chr4	154093001	154094001	+	644.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011642, intron 3 of 13)	intron (NM_011642, intron 3 of 13)	3672.0	NM_001126330	22062.0	Mm.78015	NM_011642	ENSMUSG00000029026	Trp73	TAp73|Tp73|deltaNp73|p73	transformation related protein 73	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31649880-3	chr15	31649399	31650399	+	644.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	47783.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-113678728-2	chr11	113678228	113679228	+	644.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_138598, intron 1 of 2)	intron (NM_138598, intron 1 of 2)	5423.0	NM_138598	28081.0	Mm.351688	NM_138598	ENSMUSG00000041629	Fam104a	D11Wsu99e	family with sequence similarity 104, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96261778-2	chr3	96261330	96262330	+	644.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1487.0	NM_033596	97122.0	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	28.5	67.0	19.5	14.0	35.0	21.5
Merged-chr5-25225762-2	chr5	25225262	25226262	+	644.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_144908, intron 1 of 11)	B3A|SINE|B2	2890.0	NM_144908	231050.0	Mm.246718	NM_144908	ENSMUSG00000038072	Galnt11	A430075I06Rik|AI648252|E430002F06Rik	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95289352-2	chr10	95288852	95289852	+	644.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	RLTR20A|LTR|ERVK	34357.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98779200-2	chr15	98778690	98779690	+	644.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1040.0	NM_011718	22410.0	Mm.4709	NM_011718	ENSMUSG00000022996	Wnt10b	Wnt12	wingless-type MMTV integration site family, member 10B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-116050547-2	chr12	116050047	116051047	+	644.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_019565, intron 1 of 2)	RMER15|LTR|ERVL	2823.0	NM_019565	56220.0	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding	0.0	3.0	6.5	5.0	0.0	1.5
Merged-chr5-138756052-4	chr5	138755468	138756468	+	644.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030565, exon 1 of 10)	exon (NM_030565, exon 1 of 10)	887.0	NM_001359593	80752.0	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106416915-3	chr8	106416424	106417424	+	644.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011764, intron 1 of 3)	intron (NM_011764, intron 1 of 3)	1585.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16980553-2	chr7	16980100	16981100	+	644.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13988.0	NM_001101535	434130.0	Mm.459162	NM_001101535	ENSMUSG00000041117	Ccdc8	-	coiled-coil domain containing 8	protein-coding	1.0	2.0	5.5	0.0	0.0	4.5
Merged-chr14-79428611-2	chr14	79428111	79429111	+	644.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001024135, exon 1 of 1)	exon (NM_001024135, exon 1 of 1)	2100.0	NM_001024135	211255.0	Mm.284526	NM_001024135	ENSMUSG00000043881	Kbtbd7	1110008P08Rik|AU045792|Gm295	kelch repeat and BTB (POZ) domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54784466-2	chr6	54783966	54784966	+	644.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-32450.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35166331-4	chr9	35165833	35166833	+	644.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027030, intron 2 of 5)	intron (NM_027030, intron 2 of 5)	9654.0	NM_027030	69305.0	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	0.0	2.5	0.0	0.0	0.0	0.0
Merged-chr4-144907481-3	chr4	144906985	144907985	+	644.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	14348.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-115898148-3	chr4	115897671	115898671	+	644.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001357060, exon 2 of 2)	exon (NM_001357060, exon 2 of 2)	7505.0	NM_001357060	76237.0	Mm.101606	NM_001357060	ENSMUSG00000034185	6430628N08Rik	-	RIKEN cDNA 6430628N08 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58773498-4	chr1	58772999	58773999	+	644.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-21875.0	NM_009812	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	10.5	45.5	34.0	10.0	52.5	33.5
Merged-chr7-116305357-2	chr7	116304857	116305857	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305185, intron 3 of 26)	MTD|LTR|ERVL-MaLR	3019.0	NM_001305185	233765.0	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148044030-2	chr2	148043530	148044530	+	644.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010446, exon 3 of 3)	exon (NM_010446, exon 3 of 3)	1434.0	NM_001291067	15376.0	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124233101-1	chr8	124232601	124233601	+	644.0	f1_c57bl6.idr	intron (NM_139272, intron 1 of 15)	intron (NM_139272, intron 1 of 15)	1707.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	11.5	11.5	15.0	4.5	19.5	9.5
Merged-chr12-86213220-2	chr12	86212720	86213720	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28638.0	NM_027405	70373.0	Mm.252967	NM_027405	ENSMUSG00000021254	Gpatch2l	1700020O03Rik|4732487G21Rik|A630090I05Rik|Kiaa1152	G patch domain containing 2 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152933375-2	chr3	152932875	152933875	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	48832.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-84669936-2	chr7	84669436	84670436	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360577, intron 1 of 7)	intron (NM_001360577, intron 1 of 7)	9460.0	NM_022985	65098.0	Mm.209349	NM_022985	ENSMUSG00000030629	Zfand6	3110005P07Rik|Awp1|Za20d3	zinc finger, AN1-type domain 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125641865-2	chr8	125641365	125642365	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E1|LTR|ERVL-MaLR	-27953.0	NM_028908	74393.0	Mm.41709	NM_028908	ENSMUSG00000050930	Map10	4933403G14Rik|AI835009|mKIAA1383	microtubule-associated protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24975868-2	chr7	24975368	24976368	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-3140.0	NM_010261	14470.0	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81259258-2	chr10	81258758	81259758	+	644.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001285854, exon 3 of 13)	exon (NM_001285854, exon 3 of 13)	1959.0	NM_001285853	17179.0	Mm.2918	NM_010768	ENSMUSG00000004933	Matk	CHK|HYL|Ntk|p56ntk	megakaryocyte-associated tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171221533-1	chr1	171221033	171222033	+	644.0	f1_balb.idr	promoter-TSS (NM_001305585)	promoter-TSS (NM_001305585)	-31.0	NM_001305585	11807.0	Mm.389209	NM_013474	ENSMUSG00000005681	Apoa2	Alp-2|Apo-AII|ApoA-II|ApoAII|Apoa-2|Hdl-1	apolipoprotein A-II	protein-coding	6.5	17.5	4.0	16.5	24.0	2.5
Merged-chr18-69595529-2	chr18	69595029	69596029	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	249369.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120682773-1	chr2	120682273	120683273	+	644.0	f1_c57bl6.idr	Intergenic	Intergenic	48744.0	NM_026891	68968.0	Mm.2289	NM_026891	ENSMUSG00000027284	Cdan1	1500015A01Rik|AI448026|AW492297|CDA-I|CDA1|CDAI	congenital dyserythropoietic anemia, type I (human)	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr18-43393573-1	chr18	43393073	43394073	+	644.0	f0_balb.idr	promoter-TSS (NM_009468)	promoter-TSS (NM_009468)	-196.0	NM_009468	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	1.0	1.5	0.0	0.0	4.0	0.0
Merged-chr1-91035712-3	chr1	91035264	91036264	+	644.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-17680.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-47973387-1	chr2	47972887	47973887	+	644.0	f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-840722.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71494862-2	chr6	71494362	71495362	+	644.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009543, exon 1 of 4)	exon (NM_009543, exon 1 of 4)	985.0	NM_001308303	22644.0	Mm.422969	NM_009543	ENSMUSG00000052656	Rnf103	AW146237|AW212918|Zfp103|kf-1	ring finger protein 103	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37301983-3	chr9	37301490	37302490	+	644.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081429, intron 12 of 15)	intron (NM_001081429, intron 12 of 15)	-46252.0	NM_001145960	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-58660615-1	chr18	58660115	58661115	+	644.0	f1_balb.idr	intron (NM_025478, intron 1 of 4)	intron (NM_025478, intron 1 of 4)	1133.0	NM_025478	66307.0	Mm.182574	NM_025478	ENSMUSG00000024601	Isoc1	2610034N03Rik	isochorismatase domain containing 1	protein-coding	18.0	33.0	25.5	9.0	28.0	33.0
Merged-chr8-36745023-1	chr8	36744523	36745523	+	644.0	f0_balb.idr	intron (NM_001194940, intron 5 of 17)	intron (NM_001194940, intron 5 of 17)	-11969.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	1.5	7.0	7.5	10.0	15.0	5.5
Merged-chr18-77605726-2	chr18	77605226	77606226	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5B|DNA|hAT-Charlie	-40590.0	NM_001164504	225743.0	Mm.23293	NM_001164504	ENSMUSG00000025427	Rnf165	2900024M11Rik|AI427432|Akd2|Ark2c|G630064H08Rik|Gm96	ring finger protein 165	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-105127241-2	chr2	105126741	105127741	+	644.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015462)	promoter-TSS (NR_015462)	712.0	NM_144783	22431.0	Mm.389339	NM_144783	ENSMUSG00000016458	Wt1	D630046I19Rik|Wt-1	Wilms tumor 1 homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163418350-2	chr2	163417850	163418850	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025699, intron 1 of 3)	intron (NM_025699, intron 1 of 3)	1120.0	NM_025699	66680.0	Mm.25119	NM_025699	ENSMUSG00000035399	Oser1	3230401D17Rik|AI256769|Perit1	oxidative stress responsive serine rich 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99030806-2	chr10	99030306	99031306	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76276.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105698014-1	chr5	105697514	105698514	+	644.0	f1_balb.idr	Intergenic	Intergenic	-1955.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	8.0	7.0	2.0	6.0	20.5	21.5
Merged-chr3-90438105-2	chr3	90437605	90438605	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-4469.0	NM_178876	229543.0	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	4.5	31.0	12.0	6.5	10.5	12.5
Merged-chr13-37797775-2	chr13	37797273	37798273	+	644.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28265.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	4.0	5.5	15.0	7.5	13.0	9.5
Merged-chr5-64957233-2	chr5	64956733	64957733	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359180, intron 1 of 1)	intron (NM_001359180, intron 1 of 1)	2863.0	NM_001359180	21899.0	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114628725-1	chr5	114628225	114629225	+	644.0	f1_c57bl6.idr	intron (NM_022017, intron 11 of 15)	intron (NM_022017, intron 11 of 15)	29696.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0.0	0.0	3.5	0.0	3.0	1.0
Merged-chr11-106976068-1	chr11	106975568	106976568	+	644.0	f1_c57bl6.idr	Intergenic	Intergenic	23457.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	0.0	0.5	4.5	0.0	0.5	2.0
Merged-chr10-17779745-2	chr10	17779245	17780245	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16474.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	4.0	0.0	1.5	0.0	0.0	2.0
Merged-chr14-72603607-2	chr14	72603107	72604107	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 3 of 25)	intron (NM_207636, intron 3 of 25)	106396.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30949732-1	chr14	30949232	30950232	+	644.0	f1_c57bl6.idr	Intergenic	Intergenic	-1645.0	NM_001308328	23955.0	Mm.251494	NM_011849	ENSMUSG00000021918	Nek4	Stk2	NIMA (never in mitosis gene a)-related expressed kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-151485577-2	chr5	151485077	151486077	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	79073.0	NR_131166	100042166.0	Mm.443286	NR_131166	ENSMUSG00000097321	Gm3704	-	predicted gene 3704	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6030329-2	chr4	6029829	6030829	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-160776.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120978852-2	chr4	120978352	120979352	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133716, intron 4 of 9)	B1F2|SINE|Alu	-5530.0	NR_105982	102465614.0		NR_105982	ENSMUSG00000106436	Mir7015	mmu-mir-7015	microRNA 7015	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24062876-2	chr16	24062376	24063376	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19814.0	NR_155457	108168278.0	Mm.417246	NR_155457		Gm46545	-	predicted gene, 46545	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83185572-1	chr8	83185072	83186072	+	644.0	f0_balb.idr	intron (NM_001111304, intron 1 of 20)	intron (NM_001111304, intron 1 of 20)	20220.0	NM_027758	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	11.5	8.5	8.5	7.5	33.5	3.5
Merged-chr13-95867544-2	chr13	95867091	95868091	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	24331.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	2.0	1.5	2.5	1.5	2.0	1.0
Merged-chr6-71272505-2	chr6	71271980	71272980	+	644.0	f0_balb.idr|f0_c57.idr	TTS (NR_106192)	TTS (NR_106192)	461.0	NM_145568	57896.0	Mm.250569	NM_145568	ENSMUSG00000053012	Krcc1	AA792894	lysine-rich coiled-coil 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83075740-2	chr15	83075240	83076240	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24465.0	NM_023475	68607.0	Mm.30056	NM_023475	ENSMUSG00000058586	Serhl	0610008B10Rik|1110019M09Rik|AU019786	serine hydrolase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54640600-1	chr12	54640100	54641100	+	644.0	f0_c57.idr	Intergenic	Intergenic	5412.0	NR_035439	100316682.0		NR_035439	ENSMUSG00000106344	Mir1892	Mirn1892|mir-1892|mmu-mir-1892	microRNA 1892	ncRNA	0.0	3.0	2.5	0.0	1.5	0.5
Merged-chr7-19352654-2	chr7	19352154	19353154	+	644.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007948, exon 6 of 10)	exon (NM_007948, exon 6 of 10)	6829.0	NM_145822	70333.0	Mm.171370	NM_145822	ENSMUSG00000047649	Cd3eap	1190028F09|2610103M17Rik|ASE-1|Ase1|CAST|PAF49	CD3E antigen, epsilon polypeptide associated protein	protein-coding	0.0	0.0	2.0	0.0	3.5	1.5
Merged-chr1-106374759-2	chr1	106374259	106375259	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 12 of 16)	Lx7|LINE|L1	171872.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135441789-2	chr3	135441289	135442289	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356598, intron 2 of 8)	intron (NM_001356598, intron 2 of 8)	2663.0	NM_001356597	66105.0	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-43108294-1	chr9	43107794	43108794	+	644.0	f1_c57bl6.idr	TTS (NM_001034863)	TTS (NM_001034863)	-2576.0	NM_027144	69632.0	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	4.0	3.0	4.5	4.0	7.5	0.0
Merged-chr12-3425548-2	chr12	3425048	3426048	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030694, intron 1 of 2)	B2_Mm2|SINE|B2	1199.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-48546439-1	chr6	48545939	48546939	+	644.0	f1_c57bl6.idr	Intergenic	Intergenic	-8360.0	NM_001110160	243371.0	Mm.290764	NM_177736	ENSMUSG00000073096	Lrrc61	BC027309	leucine rich repeat containing 61	protein-coding	0.5	5.5	3.5	2.0	9.0	1.0
Merged-chr17-10390065-2	chr17	10389565	10390565	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65463.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103100863-2	chr15	103100363	103101363	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45965.0	NR_045743	432989.0	Mm.383979	NR_045743	ENSMUSG00000097003	D930007P13Rik	-	Riken cDNA D930007P13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75734884-2	chr2	75734391	75735391	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-30228.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	1.5	9.5	2.5	10.5	2.0	4.5
Merged-chr17-85519064-3	chr17	85518565	85519565	+	644.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99331.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86061402-2	chr11	86060902	86061902	+	644.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178309, exon 20 of 20)	3' UTR (NM_178309, exon 20 of 20)	-37052.0	NR_046030	629393.0	Mm.372867	NR_046030		Gm20759	-	predicted gene, 20759	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60751317-2	chr13	60750817	60751817	+	644.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001285917, exon 22 of 27)	exon (NM_001285917, exon 22 of 27)	35047.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0.0	0.0	0.0	0.0	6.5	0.0
Merged-chr15-66795449-2	chr15	66794949	66795949	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029841, intron 2 of 7)	intron (NM_001029841, intron 2 of 7)	36380.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32686678-2	chr9	32686162	32687162	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9380.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	3.0	0.0	3.5	1.5	0.0	1.0
Merged-chr6-127374975-2	chr6	127374475	127375475	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67008.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	2.0	0.0	1.0	2.0	0.0	1.0
Merged-chr1-92049147-2	chr1	92048647	92049647	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207225, intron 3 of 26)	intron (NM_207225, intron 3 of 26)	131194.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr6-72607071-2	chr6	72606571	72607571	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026159, intron 10 of 10)	intron (NM_026159, intron 10 of 10)	8443.0	NM_026159	67442.0	Mm.305108	NM_026159	ENSMUSG00000056666	Retsat	0610039N19Rik|C80029|MMT-7|Ppsig	retinol saturase (all trans retinol 13,14 reductase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129105523-2	chr4	129105023	129106023	+	644.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290706)	promoter-TSS (NM_001290706)	-7.0	NM_025452	66260.0	Mm.25295	NM_025452	ENSMUSG00000028786	Tmem54	1810017F10Rik|AI507302	transmembrane protein 54	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116643413-2	chr6	116642913	116643913	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178045, intron 6 of 10)	MIRb|SINE|MIR	2634.0	NR_106010	102466793.0		NR_106010	ENSMUSG00000098334	Mir7043	Gm27776|mmu-mir-7043	microRNA 7043	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52222251-2	chr6	52221751	52222751	+	644.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010456)	TTS (NM_010456)	-3678.0	NM_010455	15404.0	Mm.294826	NM_010455	ENSMUSG00000038236	Hoxa7	AV118143|Hox-1.1|M6	homeobox A7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70303093-3	chr14	70302594	70303594	+	644.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001135152)	TTS (NM_001135152)	-13597.0	NM_001304992	19057.0	Mm.439683	NM_008915	ENSMUSG00000022092	Ppp3cc	Calnc|PP2BA gamma	protein phosphatase 3, catalytic subunit, gamma isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-43013599-2	chr6	43013099	43014099	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58099.0	NM_146656	258650.0	Mm.377613	NM_146656	ENSMUSG00000073110	Olfr444	MOR261-2	olfactory receptor 444	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80701615-1	chr10	80701115	80702115	+	644.0	f0_c57.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	205.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67051310-1	chr7	67050810	67051810	+	644.0	f0_balb.idr	intron (NM_001033877, intron 14 of 22)	intron (NM_001033877, intron 14 of 22)	171148.0	NR_131044	76628.0	Mm.384589	NR_131043	ENSMUSG00000097527	1700112J16Rik	-	RIKEN cDNA 1700112J16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11312675-1	chr8	11312175	11313175	+	644.0	f0_balb.idr	promoter-TSS (NM_009932)	promoter-TSS (NM_009932)	-130.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38433738-2	chr16	38433238	38434238	+	644.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134102)	promoter-TSS (NM_134102)	-593.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	3.0	0.5	0.0	3.0	0.5	0.0
Merged-chr9-9375449-2	chr9	9374949	9375949	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-136436.0	NM_027823	71544.0	Mm.334955	NM_027823	ENSMUSG00000050730	Arhgap42	9030420J04Rik|BE136619	Rho GTPase activating protein 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119050103-2	chr11	119049603	119050603	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9190.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	2.0	0.0	3.5	0.0	1.5	3.5
Merged-chr4-133009423-2	chr4	133008923	133009923	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2083.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184502731-1	chr1	184502231	184503231	+	644.0	f0_balb.idr	Intergenic	Intergenic	54960.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30779318-2	chr2	30778818	30779818	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22419.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111945987-2	chr12	111945487	111946487	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1505.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32659591-1	chr16	32659091	32660091	+	644.0	f1_c57bl6.idr	intron (NM_001110147, intron 1 of 13)	intron (NM_001110147, intron 1 of 13)	8606.0	NR_033493	675921.0	Mm.404316	NR_033493	ENSMUSG00000075265	Tnk2os	Gm10818	tyrosine kinase, non-receptor 2, opposite strand	ncRNA	0.0	0.0	0.0	15.0	0.0	1.0
Merged-chr12-54397136-2	chr12	54396636	54397636	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	-5818.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155838578-1	chr4	155838078	155839078	+	644.0	f1_balb.idr	Intergenic	Intergenic	-1102.0	NM_024263	74761.0	Mm.159028	NM_024263	ENSMUSG00000029070	Mxra8	1200013A08Rik|1700095D18Rik|AI131686|Asp3|Dicam	matrix-remodelling associated 8	protein-coding	2.0	7.5	1.5	0.5	3.0	0.5
Merged-chr2-84557233-1	chr2	84556733	84557733	+	644.0	f0_balb.idr	Intergenic	Intergenic	-50360.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	0.0	1.0	0.0	8.5	3.0	3.0
Merged-chr4-132511406-2	chr4	132510906	132511906	+	644.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144907)	promoter-TSS (NM_144907)	-950.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78600842-2	chr15	78600342	78601342	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028195, intron 1 of 12)	intron (NM_028195, intron 1 of 12)	3795.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	11.5	10.5	12.5	7.0	8.0	19.0
Merged-chr5-122901333-1	chr5	122900833	122901833	+	644.0	f1_balb.idr	promoter-TSS (NM_013910)	promoter-TSS (NM_013910)	-983.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	0.5	20.0	17.5	5.0	22.5	29.5
Merged-chr10-100836013-2	chr10	100835513	100836513	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-94378.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10268987-2	chr19	10268487	10269487	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 5 of 19)	B1_Mur1|SINE|Alu	-28239.0	NM_001033481	225908.0	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-108081657-2	chr4	108081157	108082157	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011327, intron 10 of 15)	Lx6|LINE|L1	-5700.0	NR_105823	102465213.0		NR_105823	ENSMUSG00000098980	Mir6397	Gm28004|mmu-mir-6397	microRNA 6397	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45205901-1	chr2	45205401	45206401	+	644.0	f0_balb.idr	Intergenic	Intergenic	-88459.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-33434753-2	chr5	33434253	33435253	+	644.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011320)	promoter-TSS (NM_011320)	-663.0	NM_011320	672284.0		NM_011320	ENSMUSG00000029112	Nkx1-1	Nkx-1.1|Sax2	NK1 homeobox 1	protein-coding	0.0	0.0	3.5	0.0	0.0	0.0
Merged-chr12-99447961-1	chr12	99447461	99448461	+	644.0	f0_balb.idr	intron (NM_183186, intron 1 of 5)	intron (NM_183186, intron 1 of 5)	2113.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152765433-2	chr1	152764933	152765933	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	872.0	NM_001346119	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-11879242-1	chr1	11878742	11879742	+	644.0	f1_c57bl6.idr	intron (NM_001310451, intron 10 of 12)	L1_Mus3|LINE|L1	465137.0	NM_001160371	320492.0	Mm.52021	NM_177173	ENSMUSG00000057715	A830018L16Rik	-	RIKEN cDNA A830018L16 gene	protein-coding	0.0	0.0	0.5	0.0	0.0	1.5
Merged-chr4-46503840-2	chr4	46503340	46504340	+	644.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_053179)	TTS (NM_053179)	14511.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	3.0	4.0	4.5	6.5	1.5	3.5
Merged-chr6-30469425-2	chr6	30468925	30469925	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8440.0	NR_131049	69337.0	Mm.396168	NR_131049	ENSMUSG00000085470	1700012C14Rik	-	RIKEN cDNA 1700012C14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85709408-2	chr11	85708908	85709908	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045875, intron 1 of 5)	intron (NR_045875, intron 1 of 5)	10336.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171816513-2	chr1	171816028	171817028	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23169.0	NM_001252472	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	17.0	43.5	45.0	47.0	97.0	95.5
Merged-chr6-57773109-2	chr6	57772609	57773609	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 3 of 4)	intron (NM_146168, intron 3 of 4)	52016.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39453013-1	chr18	39452513	39453513	+	644.0	f0_balb.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	34232.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	1.0	9.0	4.0	1.0	2.0	3.5
Merged-chr16-5195335-3	chr16	5194826	5195826	+	643.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013796)	TTS (NM_013796)	8686.0	NM_013796	27426.0	Mm.215641	NM_013796	ENSMUSG00000023143	Nagpa	AI596180|UCE	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-126652563-3	chr3	126652064	126653064	+	643.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	55613.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	5.5	10.0	8.5	5.0	3.0	5.0
Merged-chr9-20757171-3	chr9	20756656	20757656	+	643.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-10860.0	NM_001357639	244723.0	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-106558727-3	chr7	106558241	106559241	+	643.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	85904.0	NM_001277179	434223.0	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	0.5	0.0	5.0	22.5	2.5	6.0
Merged-chr2-129628451-2	chr2	129627934	129628934	+	643.766663	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291019, intron 7 of 7)	intron (NM_001291019, intron 7 of 7)	32972.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	6.5	15.5	28.0	1.0	27.0	16.5
Merged-chr1-58733740-2	chr1	58733240	58734240	+	643.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009805)	TTS (NM_009805)	3188.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146768956-4	chr5	146768458	146769458	+	643.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011669, exon 2 of 9)	exon (NM_011669, exon 2 of 9)	25998.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	6.0	18.5	15.0	6.0	18.5	14.5
Merged-chr15-84133712-2	chr15	84133193	84134193	+	643.75	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-10518.0	NM_029427	75772.0	Mm.159565	NM_029427	ENSMUSG00000018868	Pnpla5	4833426H19Rik|GS2L	patatin-like phospholipase domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5602535-2	chr19	5601990	5602990	+	643.75	f1_balb.idr|f1_c57bl6.idr	TTS (NR_037603)	TTS (NR_037603)	617.0	NM_026616	68209.0	Mm.246200	NM_026616	ENSMUSG00000024925	Rnaseh2c	1500026D16Rik|AYP1	ribonuclease H2, subunit C	protein-coding	2.5	18.0	22.5	2.5	15.5	13.5
Merged-chr11-106777751-2	chr11	106777251	106778251	+	643.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_148431, intron 1 of 7)	B1F|SINE|Alu	1715.0	NM_001353435	50776.0	Mm.859	NM_015810	ENSMUSG00000020718	Polg2	mtPolB|p55|polG-beta	polymerase (DNA directed), gamma 2, accessory subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-137733058-2	chr6	137732558	137733558	+	643.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2024.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30932104-2	chr2	30931604	30932604	+	643.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-20897.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88235779-2	chr1	88235279	88236279	+	643.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 11 of 41)	B3|SINE|B2	8759.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115392554-4	chr8	115392066	115393066	+	643.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	314328.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95659591-2	chr9	95659091	95660091	+	643.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 2 of 8)	L1MB7|LINE|L1	21963.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25620793-2	chr15	25620293	25621293	+	643.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1757.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94728356-3	chr10	94727863	94728863	+	643.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029852, intron 4 of 15)	B1_Mm|SINE|Alu	39573.0	NM_029852	77048.0	Mm.296971	NM_029852	ENSMUSG00000020024	Cep83	2600001G24Rik|4921537D05Rik|5730513H21Rik|Ccdc41	centrosomal protein 83	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39544383-3	chr18	39543881	39544881	+	643.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57136.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-88405432-2	chr9	88404932	88405932	+	643.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359958, intron 8 of 28)	intron (NM_001359958, intron 8 of 28)	33519.0	NM_001359958	244962.0	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding	21.0	11.0	9.5	17.5	15.5	7.0
Merged-chr1-85598315-1	chr1	85597815	85598815	+	643.666687	f1_balb.idr	intron (NM_030194, intron 1 of 11)	intron (NM_030194, intron 1 of 11)	495.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25151100-3	chr8	25150573	25151573	+	643.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8160.0	NR_106187	102467006.0		NR_106187	ENSMUSG00000099142	Mir8108	Gm27484|mmu-mir-8108	microRNA 8108	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25974004-1	chr8	25973504	25974504	+	643.666687	f1_balb.idr	intron (NM_029884, intron 1 of 17)	intron (NM_029884, intron 1 of 17)	2740.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	172.0	439.0	273.5	50.5	149.0	90.0
Merged-chr17-56268542-2	chr17	56268042	56269042	+	643.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_174989)	TTS (NM_174989)	8225.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6706349-4	chr2	6705886	6706886	+	643.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	RSINE1|SINE|B4	15276.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35189184-2	chr2	35188684	35189684	+	643.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026697, intron 4 of 7)	intron (NM_026697, intron 4 of 7)	11936.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59810286-2	chr15	59809813	59810813	+	643.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-15354.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	17.0	37.5	31.5	18.0	24.0	17.0
Merged-chr4-142016927-2	chr4	142016427	142017427	+	643.625	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131014)	promoter-TSS (NR_131014)	-971.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27247735-2	chr2	27247235	27248235	+	643.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138665)	promoter-TSS (NM_138665)	-432.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-82945652-2	chr5	82945152	82946152	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-146587.0	NR_035415	100316803.0		NR_035415	ENSMUSG00000080586	Mir1187	Mirn1187|mir-1187|mmu-mir-1187	microRNA 1187	ncRNA	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr18-23989014-2	chr18	23988514	23989514	+	643.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011755)	promoter-TSS (NM_011755)	-620.0	NM_011755	22694.0	Mm.290596	NM_011755	ENSMUSG00000063281	Zfp35	Zfp-35|Znf271|mszf13|mszf20-1|mszf28|mszf68	zinc finger protein 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102467359-2	chr15	102466865	102467865	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3267.0	NM_011042	18521.0	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22109573-2	chr16	22109073	22110073	+	643.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	MLTR14|LTR|ERV1	53726.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80982591-2	chr17	80982091	80983091	+	643.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026516, intron 1 of 3)	intron (NM_026516, intron 1 of 3)	37959.0	NM_026516	68027.0	Mm.357108	NM_026516	ENSMUSG00000024245	Tmem178	2810417M05Rik|Tmem178a	transmembrane protein 178	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-137109777-2	chr2	137109277	137110277	+	643.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013822, intron 2 of 25)	intron (NM_013822, intron 2 of 25)	6743.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55178079-2	chr13	55177579	55178579	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	25261.0	NM_008011	14186.0	Mm.276715	NM_008011	ENSMUSG00000005320	Fgfr4	Fgfr-4	fibroblast growth factor receptor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11469552-2	chr4	11469052	11470052	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-16406.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131255495-2	chr2	131254995	131255995	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-6513.0	NM_001355681	74450.0	Mm.101264	NM_153501	ENSMUSG00000037514	Pank2	4933409I19Rik|AI642621	pantothenate kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-74210205-2	chr13	74209705	74210705	+	643.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009644)	TTS (NM_009644)	-1505.0	NM_177333	211446.0	Mm.261859	NM_177333	ENSMUSG00000034152	Exoc3	2810050O03Rik|E430013E20Rik|Sec6|Sec6l1	exocyst complex component 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-14520550-2	chr19	14520050	14521050	+	643.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302950, intron 5 of 18)	intron (NM_001302950, intron 5 of 18)	76663.0	NM_001302951	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74288983-2	chr1	74288483	74289483	+	643.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027154, exon 12 of 12)	3' UTR (NM_027154, exon 12 of 12)	3949.0	NM_001039509	56695.0	Mm.384726	NM_019999	ENSMUSG00000026179	Pnkd	2210013N15Rik|2810403H05Rik|AI854243|Brp17|MNCb-5687|MR-1|Tahccp2	paroxysmal nonkinesiogenic dyskinesia	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77979412-2	chr11	77978912	77979912	+	643.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291225)	TTS (NM_001291225)	-3404.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-24634738-2	chr19	24634255	24635255	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39253.0	NM_183160	226040.0	Mm.391170	NM_183160	ENSMUSG00000048572	Tmem252	E030010A14Rik	transmembrane protein 252	protein-coding	1.5	2.5	0.0	0.0	0.0	0.0
Merged-chr6-34967394-2	chr6	34966894	34967894	+	643.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025573, intron 2 of 7)	intron (NM_001025573, intron 2 of 7)	10605.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-37968833-2	chr18	37968333	37969333	+	643.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175684, intron 2 of 19)	intron (NM_175684, intron 2 of 19)	898.0	NM_175684	319262.0	Mm.285060	NM_175684	ENSMUSG00000038524	Fchsd1	A030002D08Rik	FCH and double SH3 domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166660221-2	chr2	166659721	166660721	+	643.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	53611.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-30512108-2	chr3	30511608	30512608	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2433.0	NM_021442	14013.0	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	0.0	0.0	3.0	0.0	0.0	1.0
Merged-chr4-72304255-2	chr4	72303755	72304755	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	103011.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-80728390-2	chr1	80727890	80728890	+	643.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	30163.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-101729648-2	chr14	101729148	101730148	+	643.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201529)	promoter-TSS (NM_201529)	-280.0	NM_201529	380928.0	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13185085-2	chr10	13184585	13185585	+	643.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181470, intron 4 of 10)	Lx9|LINE|L1	-7062.0	NM_029172	75122.0	Mm.159433	NM_029172	ENSMUSG00000019815	Zc2hc1b	4930519B02Rik|Fam164b	zinc finger, C2HC-type containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23524250-2	chr13	23523750	23524750	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6794.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48262611-2	chr17	48262111	48263111	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	-1684.0	NM_172623	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44900948-2	chr7	44900448	44901448	+	643.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027376)	TTS (NM_027376)	4869.0	NM_027376	70300.0	Mm.276298	NM_027376	ENSMUSG00000011658	Fuz	2600013E07Rik|b2b1273Clo	fuzzy planar cell polarity protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49272399-2	chr11	49271899	49272899	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7751.0	NM_146471	258463.0	Mm.377517	NM_146471	ENSMUSG00000059864	Olfr1393	MOR256-24	olfactory receptor 1393	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103401319-2	chr14	103400819	103401819	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-54519.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-74466683-2	chr13	74466183	74467183	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27267.0	NM_146231	235956.0		NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53393168-2	chr19	53392668	53393668	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2534.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127934748-2	chr7	127934248	127935248	+	643.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001319147, intron 10 of 14)	intron (NM_001319147, intron 10 of 14)	-4635.0	NM_133351	76560.0	Mm.5875	NM_133351	ENSMUSG00000030800	Prss8	2410039E18Rik|AI313909|C79772|CAP1|fr|mCAP1	protease, serine 8 (prostasin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61455550-2	chr10	61455050	61456050	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2881.0	NM_010124	13688.0	Mm.259516	NM_010124	ENSMUSG00000020091	Eif4ebp2	2810011I19Rik|4E-BP2|AA792569|BC010348|PHAS-II	eukaryotic translation initiation factor 4E binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86160850-2	chr17	86160350	86161350	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6935.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75218980-1	chr18	75218480	75219480	+	643.5	f0_balb.idr	intron (NM_027727, intron 14 of 16)	L1MC5a|LINE|L1	78337.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	0.0	14.0	0.5	4.5	15.5	0.0
Merged-chr12-111525064-3	chr12	111524498	111525498	+	643.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13103.0	NM_178041	217869.0	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6856113-2	chr19	6855613	6856613	+	643.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081291, exon 7 of 27)	exon (NM_001081291, exon 7 of 27)	2098.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-58029545-2	chr2	58029045	58030045	+	643.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172855, intron 7 of 9)	intron (NM_172855, intron 7 of 9)	23207.0	NM_029972	77767.0	Mm.91712	NM_029972	ENSMUSG00000026830	Ermn	A330104H05Rik|AI854460|ermin|mKIAA1189	ermin, ERM-like protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-95623990-2	chr1	95623490	95624490	+	643.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009183, intron 4 of 4)	intron (NM_009183, intron 4 of 4)	43604.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75089327-2	chr15	75088829	75089829	+	643.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	22608.0	NM_001357693	100041546.0	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	0.0	1.0	0.0	9.5	1.5	6.0
Merged-chr18-32895986-2	chr18	32895486	32896486	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-15313.0	NR_105779	102465186.0		NR_105779	ENSMUSG00000098252	Mir6361	Gm27612|mmu-mir-6361	microRNA 6361	ncRNA	2.0	0.0	2.0	2.0	0.0	2.0
Merged-chr17-28518959-2	chr17	28518459	28519459	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11902.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77948836-2	chr15	77948336	77949336	+	643.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001017983, intron 5 of 8)	intron (NM_001017983, intron 5 of 8)	7886.0	NM_001168260	239554.0	Mm.295605	NM_001017983	ENSMUSG00000016552	Foxred2	A430097D04Rik|D15Bwg0759e|Gm304	FAD-dependent oxidoreductase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5629530-2	chr17	5629030	5630030	+	643.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	136930.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-93985590-2	chr11	93985090	93986090	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10501.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108397779-2	chr6	108397279	108398279	+	643.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 30 of 61)	intron (NM_010585, intron 30 of 61)	-91964.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.0	2.0	0.0	2.0	0.0	5.0
Merged-chr12-38610859-2	chr12	38610359	38611359	+	643.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178681, intron 24 of 24)	Lx5|LINE|L1	3662.0	NR_045943	73867.0	Mm.78933	NR_045943	ENSMUSG00000112967	4930428E07Rik	-	RIKEN cDNA 4930428E07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-57575715-2	chr8	57575215	57576215	+	643.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 2 of 11)	intron (NM_001167981, intron 2 of 11)	63872.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	4.5	0.0	0.0	5.0	0.0	0.0
Merged-chr10-57799056-2	chr10	57798556	57799556	+	643.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020561, intron 1 of 7)	intron (NM_020561, intron 1 of 7)	4512.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127332416-2	chr2	127331916	127332916	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3743.0	NM_010090	13537.0	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113353772-2	chr6	113353272	113354272	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9850.0	NM_133926	52163.0	Mm.277373	NM_133926	ENSMUSG00000030272	Camk1	AI505105|CaMKIalpha|D6Ertd263e	calcium/calmodulin-dependent protein kinase I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173342669-2	chr2	173342169	173343169	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66136.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56124498-2	chr17	56123998	56124998	+	643.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013662, exon 17 of 17)	exon (NM_013662, exon 17 of 17)	-2552.0	NM_029796	76905.0	Mm.348025	NM_029796	ENSMUSG00000037095	Lrg1	1300008B03Rik|2310031E04Rik|Lrg|Lrhg	leucine-rich alpha-2-glycoprotein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-8911771-3	chr5	8911225	8912225	+	643.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008830, intron 8 of 27)	intron (NM_008830, intron 8 of 27)	18004.0	NM_008830	18670.0	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26461230-2	chr17	26460657	26461657	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46192.0	NM_001081656	240055.0	Mm.133211	NM_001081656	ENSMUSG00000034413	Neurl1b	C230078M08Rik|EG240055	neuralized E3 ubiquitin protein ligase 1B	protein-coding	2.5	1.5	0.0	0.0	3.0	0.0
Merged-chr4-45794745-2	chr4	45794245	45795245	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4277.0	NM_028270	72535.0	Mm.331583	NM_028270	ENSMUSG00000035561	Aldh1b1	2700007F14Rik	aldehyde dehydrogenase 1 family, member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100745263-3	chr11	100744749	100745749	+	643.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081194, exon 14 of 17)	exon (NM_001081194, exon 14 of 17)	-7034.0	NM_001305003	19345.0	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126828750-2	chr8	126828250	126829250	+	643.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	-20270.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82358606-2	chr15	82358083	82359083	+	643.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4292.0	NM_025987	67130.0	Mm.27570	NM_025987	ENSMUSG00000022450	Ndufa6	14kDa|2700038D15Rik|B230217P19Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)	protein-coding	0.5	0.0	0.0	0.5	0.5	1.0
Merged-chr2-102800744-2	chr2	102800244	102801244	+	643.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53984.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34782697-2	chr6	34782197	34783197	+	643.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178630, intron 2 of 18)	intron (NM_178630, intron 2 of 18)	2265.0	NM_001289656	76223.0	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122951090-3	chr5	122950603	122951603	+	643.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003953, intron 6 of 22)	intron (NM_001003953, intron 6 of 22)	37996.0	NM_001003953	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	0.0	0.0	0.0	5.0	0.0	2.0
Merged-chr11-17257145-2	chr11	17256645	17257645	+	643.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330649)	promoter-TSS (NM_001330649)	-402.0	NM_020558	57316.0	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-100480611-3	chr6	100480100	100481100	+	643.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-46800.0	NR_040525	73395.0	Mm.69413	NR_040525	ENSMUSG00000101553	1700049E22Rik	-	RIKEN cDNA 1700049E22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118813213-3	chr14	118812716	118813716	+	643.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160097, intron 1 of 3)	intron (NM_001160097, intron 1 of 3)	25345.0	NM_001160097	58187.0	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52598597-2	chr13	52598097	52599097	+	643.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 1 of 13)	intron (NM_011518, intron 1 of 13)	1715.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124713707-2	chr6	124713207	124714207	+	643.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_007531, intron 3 of 8)	intron (NM_007531, intron 3 of 8)	1418.0	NM_007531	12034.0	Mm.36241	NM_007531	ENSMUSG00000004264	Phb2	AU044498|BAP|Bap37|Bcap37|REA	prohibitin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27958097-2	chr15	27957597	27958597	+	643.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	67751.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130292542-2	chr4	130292042	130293042	+	643.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16236.0	NM_010174	14077.0	Mm.388886	NM_010174	ENSMUSG00000028773	Fabp3	Fabph-1|Fabph-4|Fabph1|Fabph4|H-FABP|Mdgi	fatty acid binding protein 3, muscle and heart	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97315458-2	chr6	97314953	97315953	+	643.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 12 of 23)	intron (NM_145148, intron 12 of 23)	-62673.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	22.0	14.0	12.0	3.0	12.0	8.5
Merged-chr19-61224008-2	chr19	61223511	61224511	+	643.25	f0_balb.idr|f0_c57.idr	TTS (NM_009970)	TTS (NM_009970)	4407.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0.0	5.0	1.0	0.0	0.0	0.0
Merged-chr10-4431502-2	chr10	4431002	4432002	+	643.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358796, intron 1 of 13)	intron (NM_001358796, intron 1 of 13)	886.0	NM_025343	66084.0	Mm.153111	NM_025343	ENSMUSG00000019763	Rmnd1	0610042C05Rik|AA408137|AI462664|AW536662	required for meiotic nuclear division 1 homolog	protein-coding	37.0	76.5	55.5	68.5	82.0	55.5
Merged-chr13-43183082-2	chr13	43182582	43183582	+	643.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11581.0	NM_001252640	67046.0	Mm.269213	NM_025935	ENSMUSG00000021368	Tbc1d7	2610009C09Rik	TBC1 domain family, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-105971414-2	chr12	105970885	105971885	+	643.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38878.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	13.0	6.0	2.5	5.5	7.0	0.0
Merged-chr4-88440732-2	chr4	88440250	88441250	+	643.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1824.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	22.0	2.5	15.0	28.5	21.0	31.0
Merged-chr1-131022762-2	chr1	131022262	131023262	+	643.083313	f1_balb.idr|f1_c57bl6.idr	intron (NM_010548, intron 4 of 4)	intron (NM_010548, intron 4 of 4)	2917.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135641962-1	chr7	135641462	135642462	+	643.0	f0_balb.idr	intron (NM_001316679, intron 1 of 19)	intron (NM_001316679, intron 1 of 19)	-9937.0	NM_001316681	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39461778-1	chr18	39461278	39462278	+	643.0	f0_balb.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	25467.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	17.5	35.0	25.0	8.5	9.0	11.0
Merged-chr4-107212673-2	chr4	107212173	107213173	+	643.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081272, exon 2 of 5)	exon (NM_001081272, exon 2 of 5)	3493.0	NM_001081272	546840.0	Mm.331755	NM_001081272	ENSMUSG00000070877	Ldlrad1	-	low density lipoprotein receptor class A domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62574968-2	chr11	62574468	62575468	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011706, intron 1 of 15)	intron (NM_011706, intron 1 of 15)	482.0	NM_011706	22368.0	Mm.288064	NM_011706	ENSMUSG00000018507	Trpv2	GRC|OTRPC2|VRL-1|Vrl1	transient receptor potential cation channel, subfamily V, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-26401913-3	chr12	26401409	26402409	+	643.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080563, intron 1 of 8)	intron (NM_080563, intron 1 of 8)	13101.0	NR_105856	102466676.0		NR_105856	ENSMUSG00000098771	Mir6538	Gm27439|mmu-mir-6538	microRNA 6538	ncRNA	4.5	11.5	2.5	1.0	15.0	4.5
Merged-chr9-66909429-1	chr9	66908929	66909929	+	643.0	f0_balb.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	10276.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29277341-2	chr6	29276841	29277841	+	643.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-3800.0	NM_001101486	245884.0	Mm.33683	NM_001101486	ENSMUSG00000079652	Fam71f2	AI507611|GARI	family with sequence similarity 71, member F2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-24717193-1	chr12	24716693	24717693	+	643.0	f1_c57bl6.idr	Intergenic	Intergenic	8939.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	0.0	4.5	0.5	0.0	7.0	3.5
Merged-chr5-90759877-1	chr5	90759377	90760377	+	643.0	f1_c57bl6.idr	intron (NM_009141, intron 2 of 3)	intron (NM_009141, intron 2 of 3)	579.0	NM_009141	20311.0	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	1.5	15.0	0.0	0.0	0.0	0.0
Merged-chr14-66872281-2	chr14	66871781	66872781	+	643.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	BC1_Mm|scRNA|scRNA	3431.0	NM_001034881	432870.0	Mm.425890	NM_001034881	ENSMUSG00000075553	Gm5464	EG432870	predicted gene 5464	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92650243-2	chr1	92649743	92650743	+	643.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1402.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31071353-2	chr6	31070853	31071853	+	643.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8260.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145259771-2	chr4	145259271	145260271	+	643.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-12901.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24931681-3	chr10	24931183	24932183	+	643.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4213.0	NM_007482	11846.0	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	1.0	11.5	6.0	1.0	16.5	5.5
Merged-chr3-131239307-2	chr3	131238807	131239807	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008212, intron 6 of 7)	intron (NM_008212, intron 6 of 7)	32794.0	NM_008212	15107.0	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103964719-2	chr2	103964219	103965219	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142337, intron 1 of 3)	intron (NM_001142337, intron 1 of 3)	-4838.0	NM_001142336	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87110296-1	chr17	87109796	87110796	+	643.0	f0_balb.idr	intron (NM_019654, intron 1 of 2)	intron (NM_019654, intron 1 of 2)	2617.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	6.5	10.0	19.5	41.5	44.0	34.0
Merged-chr1-177795193-2	chr1	177794693	177795693	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007422, intron 1 of 12)	intron (NM_007422, intron 1 of 12)	1316.0	NM_007422	11566.0	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52959870-2	chr2	52959370	52960370	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	102002.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112000840-1	chr13	112000340	112001340	+	643.0	f1_c57bl6.idr	Intergenic	(TGG)n|Simple_repeat|Simple_repeat	132904.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	4.5	2.0	1.0	3.5	6.0	7.0
Merged-chr8-108956668-2	chr8	108956185	108957185	+	643.0	f0_c57.idr|f1_balb.idr	exon (NM_007496, exon 10 of 10)	exon (NM_007496, exon 10 of 10)	19825.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0.0	1.5	2.5	0.0	3.5	0.0
Merged-chr17-56607548-2	chr17	56607048	56608048	+	643.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153152)	TTS (NM_153152)	2223.0	NM_153152	224904.0	Mm.34002	NM_153152	ENSMUSG00000049760	2410015M20Rik	Mic13|QIL1|sr104	RIKEN cDNA 2410015M20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84588690-2	chr18	84588190	84589190	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 1 of 8)	intron (NM_001033341, intron 1 of 8)	814.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33964638-2	chr16	33964138	33965138	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009471, intron 1 of 5)	B2_Mm2|SINE|B2	2400.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127356909-2	chr2	127356409	127357409	+	643.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291003, exon 9 of 9)	3' UTR (NM_001291003, exon 9 of 9)	-6377.0	NM_009633	11552.0	Mm.347390	NM_009633	ENSMUSG00000058620	Adra2b	Adra-2b|[a]2B|a2b-AR|alpha2-C2|alpha2B	adrenergic receptor, alpha 2b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83453293-2	chr6	83452793	83453793	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347313, intron 2 of 11)	intron (NM_001347313, intron 2 of 11)	3099.0	NM_001347313	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115155179-2	chr5	115154679	115155679	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175403, intron 1 of 4)	intron (NM_175403, intron 1 of 4)	2997.0	NM_175403	109154.0	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	1.5	0.0	3.5	0.0	5.5	3.0
Merged-chr4-139599928-1	chr4	139599428	139600428	+	643.0	f1_balb.idr	intron (NM_001205173, intron 1 of 8)	RSINE1|SINE|B4	-22966.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	37.0	54.5	45.0	14.5	25.5	17.5
Merged-chr9-65564339-2	chr9	65563839	65564839	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 2 of 5)	intron (NM_153119, intron 2 of 5)	15748.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	20.5	70.5	68.0	35.5	88.5	88.0
Merged-chr4-111045679-1	chr4	111045179	111046179	+	643.0	f0_balb.idr	intron (NM_001284190, intron 4 of 12)	intron (NM_001284190, intron 4 of 12)	-369327.0	NR_033793	67621.0	Mm.45533	NM_026279	ENSMUSG00000028545	Bend5	2310026E23Rik	BEN domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120490010-2	chr8	120489510	120490510	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	1144.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70487210-1	chr8	70486710	70487710	+	643.0	f1_balb.idr	exon (NM_182991, exon 1 of 8)	exon (NM_182991, exon 1 of 8)	148.0	NM_182991	67937.0	Mm.23002	NM_182991	ENSMUSG00000035964	Tmem59l	5330410G16Rik	transmembrane protein 59-like	protein-coding	9.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119063585-1	chr9	119063085	119064085	+	643.0	f1_c57bl6.idr	intron (NM_011700, intron 10 of 18)	intron (NM_011700, intron 10 of 18)	10807.0	NM_001164567	22351.0	Mm.83817	NM_011700	ENSMUSG00000038775	Vill	Villp	villin-like	protein-coding	0.0	0.5	6.0	0.0	0.0	1.5
Merged-chr11-98919716-2	chr11	98919216	98920216	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025779, intron 10 of 11)	B1_Mur4|SINE|Alu	11565.0	NM_011799	23834.0	Mm.20912	NM_011799	ENSMUSG00000017499	Cdc6	CDC18L	cell division cycle 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-166342739-3	chr1	166342223	166343223	+	643.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36444.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-82902767-1	chr6	82902267	82903267	+	643.0	f0_balb.idr	Intergenic	L1MC4a|LINE|L1	-20914.0	NR_040520	69652.0	Mm.96357	NR_040520	ENSMUSG00000100291	2310069B03Rik	-	RIKEN cDNA 2310069B03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127379015-1	chr2	127378515	127379515	+	643.0	f1_balb.idr	Intergenic	MIRc|SINE|MIR	15729.0	NM_009633	11552.0	Mm.347390	NM_009633	ENSMUSG00000058620	Adra2b	Adra-2b|[a]2B|a2b-AR|alpha2-C2|alpha2B	adrenergic receptor, alpha 2b	protein-coding	7.5	31.0	16.0	18.5	7.0	15.5
Merged-chr1-63108902-2	chr1	63108402	63109402	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114609, intron 1 of 11)	B1F|SINE|Alu	5365.0	NM_001081436	227195.0	Mm.74718	NM_001081436	ENSMUSG00000040865	Ino80d	7330405I11|A430093A21Rik|BC010584	INO80 complex subunit D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49109494-2	chr13	49108994	49109994	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290313, intron 2 of 29)	intron (NM_001290313, intron 2 of 29)	38834.0	NM_029361	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68893819-1	chr11	68893319	68894319	+	643.0	f1_c57bl6.idr	3' UTR (NM_177060, exon 3 of 3)	3' UTR (NM_177060, exon 3 of 3)	5266.0	NM_177060	320040.0	Mm.305696	NM_177060	ENSMUSG00000046490	Rnf222	9930039A11Rik	ring finger protein 222	protein-coding	6.0	0.0	0.5	1.5	2.5	4.0
Merged-chr14-25767005-2	chr14	25766505	25767505	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 1 of 3)	intron (NM_001101433, intron 1 of 3)	1851.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-62908494-2	chr14	62907994	62908994	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 3 of 11)	MTC|LTR|ERVL-MaLR	42952.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130476889-1	chr2	130476389	130477389	+	643.0	f0_balb.idr	intron (NM_001355161, intron 1 of 21)	RMER10A|LTR|ERVL	26611.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	16.0	16.0	16.0	21.0	47.0	35.0
Merged-chr2-145825854-1	chr2	145825354	145826354	+	643.0	f0_balb.idr	intron (NM_028724, intron 4 of 12)	ID_B1|SINE|B4	39738.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25079705-2	chr7	25079205	25080205	+	643.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001168506, exon 3 of 3)	exon (NM_001168506, exon 3 of 3)	2898.0	NM_175477	232976.0	Mm.41568	NM_175477	ENSMUSG00000045252	Zfp574	A630056B21Rik|Znf574	zinc finger protein 574	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57928999-2	chr15	57928499	57929499	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356310, intron 3 of 19)	intron (NM_001356310, intron 3 of 19)	16800.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-37335886-1	chr18	37335386	37336386	+	643.0	f1_balb.idr	exon (NM_053131, exon 1 of 1)	exon (NM_053131, exon 1 of 1)	1858.0	NM_053131	93877.0	Mm.59009	NM_053131	ENSMUSG00000051678	Pcdhb6	Pcdhb5B|PcdhbF	protocadherin beta 6	protein-coding	1.5	0.0	0.0	0.0	13.5	1.5
Merged-chr7-101618996-1	chr7	101618496	101619496	+	643.0	f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-37835.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	43.5	69.5	48.5	32.0	60.5	50.5
Merged-chr5-140614202-2	chr5	140613702	140614702	+	643.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008494, exon 7 of 8)	exon (NM_008494, exon 7 of 8)	6861.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128869510-2	chr2	128869003	128870003	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024237, intron 1 of 7)	intron (NM_024237, intron 1 of 7)	5571.0	NM_024237	70370.0	Mm.5107	NM_024237	ENSMUSG00000027386	Fbln7	1600015H20Rik|AI464334|TM14	fibulin 7	protein-coding	0.0	3.5	0.0	2.0	8.5	0.0
Merged-chr3-88835473-1	chr3	88834973	88835973	+	643.0	f1_balb.idr	intron (NM_027389, intron 1 of 31)	CpG	242.0	NM_001242372	76022.0	Mm.126870	NM_027389	ENSMUSG00000054199	Gon4l	1500041I23Rik|2610100B20Rik|3632445O20Rik|5430404N14Rik|AA387005	gon-4-like (C.elegans)	protein-coding	12.5	47.5	12.5	0.0	0.0	0.0
Merged-chr9-121746608-1	chr9	121746108	121747108	+	643.0	f1_balb.idr	intron (NM_010918, intron 12 of 16)	intron (NM_010918, intron 12 of 16)	13335.0	NR_033503	320301.0	Mm.373883	NR_033503		E530011L22Rik	-	RIKEN cDNA E530011L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32268134-1	chr11	32267634	32268634	+	643.0	f0_balb.idr	promoter-TSS (NR_104306)	promoter-TSS (NR_104306)	-427.0	NM_001284359	17168.0	Mm.263161	NM_181569	ENSMUSG00000020289	Nprl3	Aag|CGTHBA|HS-26|HS-40|Mare|Phg|Prox1|m(alpha)RE	nitrogen permease regulator-like 3	protein-coding	8.5	22.5	18.0	14.5	61.5	26.5
Merged-chr11-98026125-2	chr11	98025625	98026625	+	643.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159483)	promoter-TSS (NM_001159483)	-585.0	NM_001159483	19921.0	Mm.10247	NM_009078	ENSMUSG00000017404	Rpl19	-	ribosomal protein L19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-15173857-2	chr13	15173357	15174357	+	643.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-289866.0	NM_008130	14634.0	Mm.5098	NM_008130	ENSMUSG00000021318	Gli3	AI854843|AU023367|Bph|GLI3-190|GLI3FL|Pdn|Xt|add	GLI-Kruppel family member GLI3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110803046-2	chr7	110802546	110803546	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009667, intron 8 of 14)	intron (NM_009667, intron 8 of 14)	30442.0	NM_009667	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-18283648-1	chr4	18283148	18284148	+	643.0	f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	430190.0	NM_019724	17389.0	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT-MMP 3|MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding	0.0	0.0	2.0	2.5	0.5	1.0
Merged-chr10-94472502-2	chr10	94472002	94473002	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	MER58B|DNA|hAT-Charlie	-42355.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128241094-1	chr2	128240594	128241594	+	643.0	f0_balb.idr	Intergenic	Intergenic	113519.0	NM_001284410	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	1.0	10.5	5.5	4.5	15.0	8.0
Merged-chr12-35038151-2	chr12	35037651	35038651	+	643.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	-9038.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	12.5	18.0	26.5	14.5	23.0	18.0
Merged-chr6-17308579-2	chr6	17308079	17309079	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243064, intron 1 of 1)	intron (NM_001243064, intron 1 of 1)	939.0	NM_001243064	12389.0	Mm.28278	NM_007616	ENSMUSG00000007655	Cav1	Cav|Cav-1	caveolin 1, caveolae protein	protein-coding	0.0	1.0	0.0	0.0	1.0	0.5
Merged-chr12-76586128-1	chr12	76585628	76586628	+	643.0	f0_balb.idr	intron (NM_013675, intron 33 of 35)	intron (NM_013675, intron 33 of 35)	-38203.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-28337662-1	chr19	28337162	28338162	+	643.0	f0_balb.idr	intron (NM_175459, intron 6 of 10)	intron (NM_175459, intron 6 of 10)	-326496.0	NM_001166414	19726.0	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-36038978-2	chr12	36038478	36039478	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025359, intron 1 of 5)	B1_Mus2|SINE|Alu	3500.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	7.0	6.0	18.5	10.0	3.0	22.5
Merged-chr11-114664850-1	chr11	114664350	114665350	+	643.0	f1_balb.idr	Intergenic	Intergenic	-3693.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0.0	0.0	3.5	0.0	0.0	3.5
Merged-chr7-130929955-2	chr7	130929455	130930455	+	643.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6248.0	NM_019564	56213.0	Mm.30156	NM_019564	ENSMUSG00000006205	Htra1	AI429470|HTRA|L56|Prss11|RSPP11	HtrA serine peptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26681326-4	chr8	26680801	26681801	+	643.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143122.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	2.5	4.0	0.0	0.0	0.0	2.5
Merged-chr5-34189740-2	chr5	34189240	34190240	+	643.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2030.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-24961504-1	chr6	24961004	24962004	+	643.0	f0_balb.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-5379.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-15541420-2	chr9	15540920	15541920	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359604, intron 2 of 2)	intron (NM_001359604, intron 2 of 2)	35925.0	NM_133214	170748.0	Mm.86572	NM_133214	ENSMUSG00000058173	Smco4	Fn5	single-pass membrane protein with coiled-coil domains 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35724293-1	chr16	35723793	35724793	+	643.0	f1_balb.idr	intron (NM_153550, intron 5 of 8)	B4A|SINE|B4	45063.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	2.0	0.0	0.5	0.0	1.5	3.5
Merged-chr9-92784069-2	chr9	92783569	92784569	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040770, intron 4 of 4)	Lx5|LINE|L1	65353.0	NR_040770	331003.0	Mm.50805	NR_040770	ENSMUSG00000101734	4933400C23Rik	4933400C23	RIKEN cDNA 4933400C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150029872-1	chr4	150029372	150030372	+	643.0	f1_c57bl6.idr	Intergenic	Intergenic	-20849.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	1.0	0.0	3.5	0.0	4.0	3.5
Merged-chr13-34257881-2	chr13	34257381	34258381	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	87301.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	6.5	1.5	3.0	2.0	0.0	2.0
Merged-chr1-144343462-1	chr1	144342962	144343962	+	643.0	f0_balb.idr	Intergenic	Intergenic	-94358.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138731989-1	chr5	138731489	138732489	+	643.0	f1_balb.idr	Intergenic	RMER6BA|LTR|ERVK	-23092.0	NM_030565	80752.0	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	0.0	2.5	3.5	9.0	7.0	10.5
Merged-chr4-150604846-2	chr4	150604346	150605346	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	RLTR51B_Mm|LTR|ERVK?	47328.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	2.5	6.5	6.5	2.5	0.5	6.0
Merged-chr11-104315931-2	chr11	104315431	104316431	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285454, intron 6 of 9)	intron (NM_001285454, intron 6 of 9)	84495.0	NM_001285454	17762.0	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69189779-2	chr3	69189279	69190279	+	643.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-32640.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84238327-1	chr8	84237827	84238827	+	643.0	f1_balb.idr	Intergenic	B3|SINE|B2	-1285.0	NM_172503	212168.0	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	45.0	72.0	54.5	28.5	69.0	40.0
Merged-chr6-114345278-2	chr6	114344778	114345778	+	643.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52658.0	NM_001317125	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25816633-2	chr14	25816133	25817133	+	643.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25522.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64140567-2	chr7	64140076	64141076	+	643.0	f0_balb.idr|f0_c57.idr	Intergenic	MER2|DNA|TcMar-Tigger	-13259.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11823165-1	chr19	11822665	11823665	+	643.0	f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-3762.0	NR_153434	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	18.0	37.5	4.5	6.5	15.5	6.5
Merged-chr6-88108977-1	chr6	88108477	88109477	+	643.0	f1_c57bl6.idr	Intergenic	Intergenic	-4719.0	NR_105795	102465196.0		NR_105795	ENSMUSG00000099095	Mir6376	Gm27778|mmu-mir-6376	microRNA 6376	ncRNA	0.0	0.0	0.0	0.0	0.0	5.5
Merged-chr5-125346999-2	chr5	125346518	125347518	+	643.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5924.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.5	1.5	4.0	3.0	4.0	0.0
Merged-chr15-80015882-2	chr15	80015352	80016352	+	642.966675	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1044.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	0.0	0.5	0.5	13.5	3.0	2.5
Merged-chr16-35741174-2	chr16	35740687	35741687	+	642.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 2 of 8)	RMER19B|LTR|ERVK	28169.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	0.5	6.5	4.5	1.0	7.5	2.0
Merged-chr18-69198480-2	chr18	69198077	69199077	+	642.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-145915.0	NM_013685	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	6.0	7.0	0.0	8.0	0.0	1.5
Merged-chr4-115640246-2	chr4	115639745	115640745	+	642.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007823, intron 4 of 11)	(CTGGGG)n|Simple_repeat|Simple_repeat	7460.0	NM_007823	13120.0	Mm.1840	NM_007823	ENSMUSG00000028713	Cyp4b1	-	cytochrome P450, family 4, subfamily b, polypeptide 1	protein-coding	3.0	7.0	3.5	0.0	8.0	4.5
Merged-chr16-11468033-2	chr16	11467533	11468533	+	642.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	62385.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-56899672-2	chr6	56899172	56900172	+	642.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360963, intron 1 of 9)	intron (NM_001360963, intron 1 of 9)	2214.0	NM_001252374	107569.0	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|P5'N-1|P5N-1|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46527478-2	chr19	46527018	46528018	+	642.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	25870.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	13.5	10.5	6.0	3.5	6.5
Merged-chr11-120627146-2	chr11	120626646	120627646	+	642.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2144.0	NM_153056	209011.0	Mm.292957	NM_153056	ENSMUSG00000025138	Sirt7	-	sirtuin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60710218-3	chr18	60709759	60710759	+	642.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348100, intron 2 of 14)	MIRc|SINE|MIR	17307.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0.0	0.0	1.0	1.5	0.5	0.0
Merged-chr11-50154976-3	chr11	50154495	50155495	+	642.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029745, intron 10 of 20)	intron (NM_029745, intron 10 of 20)	-19856.0	NM_026543	68067.0	Mm.40828	NM_026543	ENSMUSG00000020381	Mrnip	2900016G09Rik|3010026O09Rik|AI851514|AW475975	MRN complex interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67230362-2	chr7	67229862	67230862	+	642.666687	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291191)	TTS (NM_001291191)	7746.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98001139-2	chr11	98000639	98001639	+	642.666687	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001282977)	TTS (NM_001282977)	-4966.0	NR_152188	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21170487-2	chr13	21169987	21170987	+	642.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9444.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	11.5	4.0	6.0	9.0	17.0	7.0
Merged-chr2-27352718-2	chr2	27352218	27353218	+	642.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	74890.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-72605018-2	chr14	72604518	72605518	+	642.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 3 of 25)	intron (NM_207636, intron 3 of 25)	104985.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24703434-2	chr17	24702934	24703934	+	642.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145396, intron 12 of 21)	B2_Mm1a|SINE|B2	4219.0	NM_145396	213773.0	Mm.100353	NM_145396	ENSMUSG00000040688	Tbl3	9430070M15Rik	transducin (beta)-like 3	protein-coding	2.0	0.0	2.5	3.5	0.0	0.0
Merged-chr19-8710658-2	chr19	8710158	8711158	+	642.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161413, intron 4 of 9)	intron (NM_001161413, intron 4 of 9)	3239.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149696411-3	chr4	149695898	149696898	+	642.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029837, intron 1 of 23)	intron (NM_001029837, intron 1 of 23)	2310.0	NM_001164050	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	43.0	119.5	74.0	34.0	81.0	43.5
Merged-chr4-58511803-4	chr4	58511270	58512270	+	642.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010336, intron 1 of 3)	L1MB2|LINE|L1	-12367.0	NM_001290486	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	1.5	1.5	13.5	0.0	4.0	9.0
Merged-chr17-71021204-3	chr17	71020723	71021723	+	642.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083934, intron 1 of 36)	RSINE1|SINE|B4	1666.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	9.0	11.0	14.0	6.5	22.0	11.5
Merged-chr5-111273808-2	chr5	111273308	111274308	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 14 of 22)	intron (NM_001267622, intron 14 of 22)	-56889.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152759669-2	chr2	152759169	152760169	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289739, intron 4 of 4)	intron (NM_001289739, intron 4 of 4)	5496.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-70021616-2	chr16	70021116	70022116	+	642.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	-157872.0	NM_173069	224318.0	Mm.212743	NM_173069	ENSMUSG00000063163	Speer2	SPEER-2	spermatogenesis associated glutamate (E)-rich protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131295299-2	chr1	131294799	131295799	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 21 of 22)	intron (NM_001081011, intron 21 of 22)	-15736.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	9.0	12.5	2.0	8.0	13.5	8.5
Merged-chr7-145279030-2	chr7	145278530	145279530	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132643, intron 3 of 22)	intron (NR_132643, intron 3 of 22)	4981.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	0.5	4.5	2.0	2.5	4.0	1.0
Merged-chr2-39224730-2	chr2	39224230	39225230	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024209, intron 1 of 6)	B3|SINE|B2	1619.0	NM_024209	67857.0	Mm.389242	NM_024209	ENSMUSG00000026753	Ppp6c	2310003C10Rik|Pp6C	protein phosphatase 6, catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34094661-2	chr17	34094161	34095161	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008206, intron 3 of 4)	intron (NM_008206, intron 3 of 4)	648.0	NR_046183	414076.0	Mm.473092	NR_046183	ENSMUSG00000098197	BC051537	-	cDNA sequence BC051537	ncRNA	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35838137-2	chr16	35837637	35838637	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039530, intron 15 of 16)	intron (NM_001039530, intron 15 of 16)	33245.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120537411-2	chr5	120536911	120537911	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145853, intron 27 of 27)	intron (NM_145853, intron 27 of 27)	26219.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr7-113512726-2	chr7	113512226	113513226	+	642.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1108.0	NM_001285831	67420.0	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117346714-2	chr11	117346214	117347214	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113488, intron 1 of 9)	intron (NM_001113488, intron 1 of 9)	14401.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55447722-2	chr12	55447222	55448222	+	642.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	44925.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134646478-2	chr1	134645978	134646978	+	642.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009307)	promoter-TSS (NM_009307)	-134.0	NM_009307	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5646707-2	chr17	5646207	5647207	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	-151950.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120870308-2	chr9	120869808	120870808	+	642.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44942.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6472741-2	chr17	6472241	6473241	+	642.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21747.0	NR_033520	547127.0	Mm.297552	NM_001045538		Tmem181b-ps	Tmem181b	transmembrane protein 181B, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93474506-2	chr1	93474006	93475006	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133808, intron 1 of 27)	intron (NM_133808, intron 1 of 27)	3871.0	NM_001357556	110611.0	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	6.0	1.0	2.0	6.5	3.0	0.0
Merged-chr5-140604485-2	chr5	140603985	140604985	+	642.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2856.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25141879-2	chr12	25141379	25142379	+	642.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12705.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	10.5	12.0	9.5	18.5	43.5	21.5
Merged-chr11-60768693-2	chr11	60768193	60769193	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009410, intron 1 of 18)	intron (NM_009410, intron 1 of 18)	8672.0	NM_009410	21975.0	Mm.10708	NM_009410	ENSMUSG00000002814	Top3a	-	topoisomerase (DNA) III alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38117288-2	chr16	38116788	38117788	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 1 of 11)	intron (NM_001347232, intron 1 of 11)	-28028.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46525615-2	chr19	46525115	46526115	+	642.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23967.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	4.0	0.0	7.5	2.0
Merged-chr16-23313831-2	chr16	23313331	23314331	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252506, intron 1 of 6)	MIRc|SINE|MIR	23361.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83538695-2	chr11	83538195	83539195	+	642.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-8177.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80289717-2	chr15	80289217	80290217	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001044308, intron 1 of 36)	intron (NM_001044308, intron 1 of 36)	2479.0	NM_001044308	239556.0	Mm.291058	NM_001044308	ENSMUSG00000022416	Cacna1i	Ca(V)3.3	calcium channel, voltage-dependent, alpha 1I subunit	protein-coding	1.0	1.0	0.0	3.5	1.0	0.0
Merged-chr15-97829008-2	chr15	97828508	97829508	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204276, intron 1 of 25)	intron (NM_001204276, intron 1 of 25)	2759.0	NM_019572	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127756145-2	chr10	127755645	127756645	+	642.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3618.0	NM_080436	107605.0	Mm.484271	NM_080436	ENSMUSG00000089789	Rdh1	-	retinol dehydrogenase 1 (all trans)	protein-coding	0.0	7.0	2.5	0.0	1.5	1.5
Merged-chr9-5421013-2	chr9	5420513	5421513	+	642.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75537.0	NM_009808	12364.0	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-88486083-2	chr9	88485583	88486583	+	642.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-3686.0	NM_001284328	56403.0	Mm.260545	NM_019666	ENSMUSG00000032423	Syncrip	2610109K23Rik|4632417O19Rik|GRY-RBP|Nsap1|Nsap1l|hnRNP Q|pp68	synaptotagmin binding, cytoplasmic RNA interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7253451-2	chr9	7252951	7253951	+	642.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19063.0	NM_008607	17386.0	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59531328-2	chr11	59530828	59531828	+	642.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-10241.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-44033946-2	chr4	44033446	44034446	+	642.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_015828)	TTS (NM_015828)	21296.0	NM_001290470	12757.0	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103100922-2	chr3	103100422	103101422	+	642.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26634.0	NM_177857	329727.0	Mm.293641	NM_177857	ENSMUSG00000007379	Dennd2c	A930010I20Rik	DENN/MADD domain containing 2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-47868852-2	chr12	47868352	47869352	+	642.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-1050077.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35873292-2	chr18	35872792	35873792	+	642.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	18605.0	NM_001357459	67393.0	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67957208-2	chr7	67956708	67957708	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 1 of 20)	intron (NM_010513, intron 1 of 20)	4951.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-15823241-2	chr9	15822741	15823741	+	642.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51315.0	NM_145712	244701.0	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25270884-2	chr17	25270384	25271384	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011665, intron 1 of 6)	PB1D7|SINE|Alu	2547.0	NM_001177610	22196.0	Mm.240044	NM_011665	ENSMUSG00000015120	Ube2i	5830467E05Rik|UBC9|Ubce2i|Ubce9	ubiquitin-conjugating enzyme E2I	protein-coding	2.0	4.5	0.0	0.0	0.0	0.0
Merged-chr2-132697702-2	chr2	132697202	132698202	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028637, intron 2 of 2)	(TG)n|Simple_repeat|Simple_repeat	7104.0	NM_028637	73747.0	Mm.284114	NM_028637	ENSMUSG00000044991	1110034G24Rik	-	RIKEN cDNA 1110034G24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43826764-2	chr1	43826264	43827264	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026430, intron 1 of 14)	intron (NM_026430, intron 1 of 14)	944.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64025400-2	chr7	64024900	64025900	+	642.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-86485.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138993702-1	chr1	138993202	138994202	+	642.5	f0_balb.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	16045.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13866422-2	chr16	13865922	13866922	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039533, intron 8 of 22)	intron (NM_001039533, intron 8 of 22)	36723.0	NM_001039533	94184.0	Mm.171484	NM_053181	ENSMUSG00000022680	Pdxdc1	2210010A19Rik|AA415817|Kiaa0251-hp	pyridoxal-dependent decarboxylase domain containing 1	protein-coding	0.0	4.0	2.5	1.5	11.0	2.0
Merged-chr11-79626066-2	chr11	79625566	79626566	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175543, intron 3 of 14)	intron (NM_175543, intron 3 of 14)	-2903.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-178321412-2	chr1	178320912	178321912	+	642.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_149827, exon 17 of 17)	non-coding (NR_149827, exon 17 of 17)	2259.0	NM_025511	66359.0	Mm.489720	NM_025511	ENSMUSG00000026500	Cox20	2310005N03Rik|Fam36a	COX20 Cox2 chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97735858-2	chr3	97735358	97736358	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 24 of 46)	intron (NM_001039376, intron 24 of 46)	32156.0	NM_178080	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29416819-2	chr2	29416319	29417319	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290489, intron 2 of 6)	intron (NM_001290489, intron 2 of 6)	38305.0	NM_001290490	68975.0	Mm.330109	NM_026896	ENSMUSG00000026799	Med27	1500015J03Rik|2310042P07Rik|AA682045|Crsp8|D2Ertd434e	mediator complex subunit 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120401271-2	chr14	120400771	120401771	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360380, intron 7 of 7)	intron (NM_001360380, intron 7 of 7)	-77190.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149712868-2	chr4	149712368	149713368	+	642.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11239.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	0.0	2.0	0.0	0.0	0.0	1.0
Merged-chr12-91314428-3	chr12	91313939	91314939	+	642.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181815, intron 10 of 25)	intron (NM_181815, intron 10 of 25)	69970.0	NM_181815	75216.0	Mm.312204	NM_181815	ENSMUSG00000061533	Cep128	4930534B04Rik|5430424K18Rik|AI449708|AI480494|E230024F20	centrosomal protein 128	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31936367-2	chr16	31935867	31936867	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172822, intron 1 of 2)	intron (NM_172822, intron 1 of 2)	2516.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-127979122-3	chr1	127978664	127979664	+	642.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 12 of 20)	(TG)n|Simple_repeat|Simple_repeat	110391.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	2.0	5.0	2.5	7.5	0.0	6.0
Merged-chr14-118237383-2	chr14	118236883	118237883	+	642.400024	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177753)	promoter-TSS (NM_177753)	-353.0	NM_177753	223227.0	Mm.70950	NM_177753	ENSMUSG00000061517	Sox21	Sox25	SRY (sex determining region Y)-box 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141410249-2	chr7	141409749	141410749	+	642.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_172116, intron 4 of 7)	intron (NM_172116, intron 4 of 7)	3876.0	NM_172116	213350.0	Mm.290953	NM_172116	ENSMUSG00000051007	Gatd1	BC023835|D230016J19Rik|Pddc1	glutamine amidotransferase like class 1 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3683507-2	chr19	3683006	3684006	+	642.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008513, intron 1 of 22)	intron (NM_008513, intron 1 of 22)	3058.0	NM_008513	16973.0	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	5.0	0.0	3.0	0.0	0.0	0.0
Merged-chr7-99089531-2	chr7	99089031	99090031	+	642.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 4 of 14)	intron (NM_178635, intron 4 of 14)	51613.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	21.5	51.0	30.0	20.0	51.5	32.5
Merged-chr11-117330918-2	chr11	117330418	117331418	+	642.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017380)	promoter-TSS (NM_017380)	-797.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-33903032-3	chr8	33902521	33903521	+	642.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042675, intron 1 of 6)	intron (NM_001042675, intron 1 of 6)	26842.0	NM_019733	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	6.0	3.0	6.0	0.0	0.0	4.5
Merged-chr2-144333241-2	chr2	144332741	144333741	+	642.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1161.0	NM_026924	107586.0	Mm.252750	NM_026924	ENSMUSG00000037279	Ovol2	1700108N11Rik|1810007D21Rik|M-OVO|M-OVO-A|M-OVO-B|MOVO|Ovo2|Zfp339|movo2	ovo like zinc finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107613402-1	chr9	107612902	107613902	+	642.333313	f1_c57bl6.idr	TTS (NM_008138)	TTS (NM_008138)	-4161.0	NM_001291539	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	9.5	53.0	35.5	20.5	21.0	24.5
Merged-chr4-105260464-3	chr4	105259961	105260961	+	642.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103114.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	11.0	0.0	0.0	1.0	16.0	9.0
Merged-chr3-51939262-3	chr3	51938760	51939760	+	642.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	165746.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182413011-3	chr1	182412486	182413486	+	642.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173378, intron 1 of 17)	intron (NM_173378, intron 1 of 17)	3819.0	NM_173378	209456.0	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-77044045-3	chr1	77043543	77044543	+	642.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	452725.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	0.0	0.0	4.5	2.5	0.0	0.5
Merged-chr12-3843056-2	chr12	3842556	3843556	+	642.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 2 of 22)	PB1D11|SINE|Alu	19188.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95662065-2	chr9	95661565	95662565	+	642.325012	f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 2 of 8)	intron (NM_029620, intron 2 of 8)	24437.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34841975-4	chr1	34841472	34842472	+	642.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160236, intron 1 of 6)	intron (NM_001160236, intron 1 of 6)	1078.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82780250-2	chr11	82779750	82780750	+	642.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291247)	promoter-TSS (NM_001291247)	792.0	NR_126068	100503272.0	Mm.486964	NR_126067	ENSMUSG00000085175	Gm11423	-	predicted gene 11423	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85114877-2	chr1	85114370	85115370	+	642.25	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-5017.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116855392-2	chr3	116854901	116855901	+	642.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4166.0	NM_001113478	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	3.0	9.0	14.5	0.0	3.5	0.5
Merged-chr12-99150289-2	chr12	99149789	99150789	+	642.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12519.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127007721-2	chr7	127007221	127008221	+	642.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_080638, intron 1 of 14)	intron (NM_080638, intron 1 of 14)	6873.0	NM_080638	78388.0	Mm.228797	NM_080638	ENSMUSG00000030681	Mvp	2310009M24Rik|LRP|VAULT1	major vault protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-12548645-5	chr10	12548170	12549170	+	642.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 50 of 73)	intron (NM_011682, intron 50 of 73)	313065.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90191027-2	chr9	90190527	90191527	+	642.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_001326294, exon 14 of 23)	exon (NM_001326294, exon 14 of 23)	28049.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84271754-2	chr17	84271254	84272254	+	642.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 30 of 37)	intron (NM_183021, intron 30 of 37)	-83807.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98707808-2	chr11	98707308	98708308	+	642.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361995, intron 19 of 25)	intron (NM_001361995, intron 19 of 25)	6495.0	NM_009971	12985.0	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93125053-2	chr1	93124553	93125553	+	642.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10187.0	NM_001276710	11611.0	Mm.7457	NM_016702	ENSMUSG00000026272	Agxt	AGT|Agt1|Agxt1|SPT	alanine-glyoxylate aminotransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27327991-2	chr2	27327491	27328491	+	642.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 2 of 29)	intron (NR_133905, intron 2 of 29)	-80688.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103501570-2	chr15	103501086	103502086	+	642.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1448.0	NM_008800	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18916241-3	chr2	18915740	18916740	+	642.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	81881.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-105807687-2	chr12	105807175	105808175	+	642.099976	f0_balb.idr|f1_balb.idr	intron (NM_011112, intron 6 of 21)	intron (NM_011112, intron 6 of 21)	22978.0	NM_001347440	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	3.0	13.0	12.5	2.0	21.5	7.0
Merged-chr8-22423490-3	chr8	22423002	22424002	+	642.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020560, intron 4 of 6)	ORR1D2|LTR|ERVL-MaLR	12162.0	NM_020560	57312.0	Mm.289402	NM_020560	ENSMUSG00000031533	Mrps31	1500002D03Rik|AA960481|Imogen38|Imogen44	mitochondrial ribosomal protein S31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27533556-2	chr7	27533056	27534056	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317355, intron 12 of 13)	intron (NM_001317355, intron 12 of 13)	10295.0	NM_001033315	233020.0	Mm.429716	NM_001033315	ENSMUSG00000040424	Hipk4	Gm162	homeodomain interacting protein kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148849571-2	chr2	148849071	148850071	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029960, intron 1 of 2)	intron (NM_029960, intron 1 of 2)	1363.0	NM_029960	77705.0	Mm.159975	NM_029960	ENSMUSG00000027446	9230104L09Rik	mCST E2	RIKEN cDNA 9230104L09 gene	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr18-23856870-2	chr18	23856370	23857370	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 4 of 7)	intron (NM_001162941, intron 4 of 7)	52900.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156439873-1	chr2	156439373	156440373	+	642.0	f0_c57.idr	intron (NM_001291120, intron 2 of 22)	intron (NM_001291120, intron 2 of 22)	18964.0	NM_001291123	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	13.5	9.5	5.0	0.0	0.5	0.5
Merged-chr13-41574070-3	chr13	41573594	41574594	+	642.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD|LINE|L1	-32122.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120288650-1	chr14	120288150	120289150	+	642.0	f0_balb.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	12981.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0.0	10.0	20.5	3.0	8.0	22.5
Merged-chr5-31223029-2	chr5	31222529	31223529	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS5|LTR|ERV1	-2484.0	NM_008014	14208.0	Mm.14501	NM_008014	ENSMUSG00000029147	Ppm1g	AI385652|Fin13	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-17361000-2	chr18	17360500	17361500	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-125518.0	NR_033607	664619.0	Mm.250005	NR_033607		4921533I20Rik	-	PRP18 pre-mRNA processing factor 18 homolog pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-5317724-2	chr10	5317224	5318224	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347711, intron 43 of 145)	intron (NM_001347711, intron 43 of 145)	-123017.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114566604-2	chr11	114566104	114567104	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-101939.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-106954029-1	chr7	106953529	106954529	+	642.0	f0_balb.idr	Intergenic	Intergenic	2905.0	NM_206897	233670.0	Mm.296765	NM_206897	ENSMUSG00000036647	Olfr6	M50|MOR103-16	olfactory receptor 6	protein-coding	0.0	0.5	0.5	0.0	1.5	0.0
Merged-chr17-71670211-2	chr17	71669711	71670711	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3050.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-95745665-1	chr12	95745165	95746165	+	642.0	f0_balb.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	53439.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21752209-2	chr13	21751709	21752709	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1656.0	NM_178211	319160.0	Mm.255646	NM_178211	ENSMUSG00000064288	Hist1h4k	-	histone cluster 1, H4k	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124893807-1	chr6	124893307	124894307	+	642.0	f1_c57bl6.idr	Intergenic	B4|SINE|B4	-5607.0	NM_013488	12504.0	Mm.2209	NM_013488	ENSMUSG00000023274	Cd4	L3T4|Ly-4	CD4 antigen	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr18-75694961-2	chr18	75694461	75695461	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 1 of 11)	intron (NM_201354, intron 1 of 11)	2735.0	NM_201354	269037.0	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	1.5	13.5	4.5	13.0	19.0	6.5
Merged-chr8-79366630-2	chr8	79366130	79367130	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 2 of 6)	intron (NM_008539, intron 2 of 6)	32838.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-57663948-1	chr3	57663448	57664448	+	642.0	f0_balb.idr	Intergenic	Intergenic	-12264.0	NM_175095	52245.0	Mm.21901	NM_175095	ENSMUSG00000036513	Commd2	1190017G07Rik|AI047739|D3Ertd176e|HSPC042	COMM domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20508597-1	chr14	20508097	20509097	+	642.0	f0_balb.idr	intron (NM_008914, intron 12 of 13)	intron (NM_008914, intron 12 of 13)	-11696.0	NM_029104	74843.0	Mm.295241	NM_029104	ENSMUSG00000021815	Mss51	4833444M15Rik|Zmynd17	MSS51 mitochondrial translational activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92445934-2	chr16	92445434	92446434	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	20235.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73530057-2	chr7	73529557	73530557	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	11689.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164944216-2	chr2	164943650	164944650	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4069.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	1.5	8.0	1.0	1.5	8.0	0.0
Merged-chr17-13857091-2	chr17	13856591	13857591	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151731, intron 20 of 33)	intron (NR_151731, intron 20 of 33)	-91282.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93212914-2	chr2	93212414	93213414	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183180, intron 5 of 9)	intron (NM_183180, intron 5 of 9)	25366.0	NM_001025246	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107549130-2	chr9	107548639	107549639	+	642.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_053253, exon 5 of 12)	exon (NM_053253, exon 5 of 12)	1829.0	NM_053253	114602.0	Mm.28331	NM_053253	ENSMUSG00000010044	Zmynd10	Blu	zinc finger, MYND domain containing 10	protein-coding	0.0	11.0	2.0	0.0	1.5	0.5
Merged-chr8-122336903-2	chr8	122336403	122337403	+	642.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009569, exon 10 of 10)	exon (NM_009569, exon 10 of 10)	25925.0	NM_133202	170732.0	Mm.154808	NM_133202	ENSMUSG00000039079	Trhr2	TRH-R2	thyrotropin releasing hormone receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50677355-1	chr17	50676855	50677855	+	642.0	f1_c57bl6.idr	intron (NM_013880, intron 5 of 5)	intron (NM_013880, intron 5 of 5)	-21326.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	2.5	7.5	1.5	17.5	8.0	2.5
Merged-chr4-6443679-2	chr4	6443179	6444179	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 1 of 30)	intron (NM_010945, intron 1 of 30)	10592.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12218688-1	chr18	12218188	12219188	+	642.0	f0_balb.idr	intron (NM_008720, intron 4 of 24)	B3|SINE|B2	17698.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	7.0	5.0	1.5	5.5	1.0	6.5
Merged-chr5-88500668-1	chr5	88500168	88501168	+	642.0	f0_balb.idr	intron (NM_017468, intron 9 of 9)	intron (NM_017468, intron 9 of 9)	12693.0	NM_017468	13801.0	Mm.8014	NM_017468	ENSMUSG00000029286	Enam	abte	enamelin	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr7-45439013-2	chr7	45438513	45439513	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030678, intron 3 of 15)	B1_Mus1|SINE|Alu	4174.0	NM_030678	14936.0	Mm.275654	NM_030678	ENSMUSG00000003865	Gys1	Gys3|MGS	glycogen synthase 1, muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68550446-2	chr11	68549946	68550946	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004435, intron 18 of 19)	Lx8|LINE|L1	-5740.0	NM_146004	215723.0	Mm.131205	NM_146004	ENSMUSG00000048329	Mfsd6l	-	major facilitator superfamily domain containing 6-like	protein-coding	0.0	0.5	0.0	0.0	3.0	0.0
Merged-chr4-130899047-1	chr4	130898547	130899547	+	642.0	f0_balb.idr	Intergenic	Intergenic	-14287.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-26817038-2	chr14	26816538	26817538	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-77566.0	NM_001170748	142687.0	Mm.138259	NM_080856	ENSMUSG00000021898	Asb14	Asb-14	ankyrin repeat and SOCS box-containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120615542-2	chr8	120615042	120616042	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308449, intron 2 of 3)	intron (NM_001308449, intron 2 of 3)	18840.0	NM_197988	68918.0	Mm.473736	NM_197988	ENSMUSG00000043687	1190005I06Rik	-	RIKEN cDNA 1190005I06 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-42896766-2	chr12	42896266	42897266	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	137451.0	NR_148724	102636207.0		NR_148724		Gm33340	Gm40882	predicted gene, 33340	ncRNA	0.0	0.0	3.0	1.5	0.0	0.0
Merged-chr11-69130422-1	chr11	69129922	69130922	+	642.0	f1_c57bl6.idr	intron (NM_011786, intron 5 of 14)	intron (NM_011786, intron 5 of 14)	4045.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	14.0	19.5	5.5	2.5	5.0	1.5
Merged-chr4-108691669-1	chr4	108691169	108692169	+	642.0	f0_balb.idr	exon (NM_183300, exon 4 of 16)	exon (NM_183300, exon 4 of 16)	32243.0	NM_183300	230597.0	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35093784-1	chr2	35093284	35094284	+	642.0	f0_balb.idr	intron (NM_178885, intron 3 of 9)	intron (NM_178885, intron 3 of 9)	6901.0	NM_001243102	98870.0	Mm.415380	NM_178885	ENSMUSG00000035875	AI182371	AI046667	expressed sequence AI182371	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-83309653-2	chr4	83309153	83310153	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 1 of 19)	intron (NM_027238, intron 1 of 19)	14536.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44404411-1	chr13	44403911	44404911	+	642.0	f0_c57.idr	Intergenic	Intergenic	-35316.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	34.5	66.5	43.0	41.5	41.5	49.0
Merged-chr14-70770314-1	chr14	70769814	70770814	+	642.0	f1_balb.idr	Intergenic	ID_B1|SINE|B4	-3686.0	NM_023045	65246.0	Mm.152987	NM_023045	ENSMUSG00000022100	Xpo7	4930506C02Rik|BB164534|Ranbp16|exp7	exportin 7	protein-coding	0.0	0.0	0.0	0.0	1.5	0.0
Merged-chr11-70980513-2	chr11	70980013	70981013	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007573, intron 2 of 5)	intron (NM_007573, intron 2 of 5)	2513.0	NM_007573	12261.0	Mm.30049	NM_007573	ENSMUSG00000018446	C1qbp	AA407365|AA986492|D11Wsu182e|HABP1|P32|gC1qBP	complement component 1, q subcomponent binding protein	protein-coding	6.0	5.5	3.0	0.0	4.0	0.5
Merged-chr18-64578301-1	chr18	64577801	64578801	+	642.0	f0_balb.idr	intron (NM_001001488, intron 4 of 27)	intron (NM_001001488, intron 4 of 27)	-61744.0	NM_001142950	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118687849-2	chr9	118687349	118688349	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 13 of 27)	MTEa|LTR|ERVL-MaLR	-23843.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.0	0.0	2.5	2.5	0.0	1.5
Merged-chr7-28151932-3	chr7	28151420	28152420	+	642.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164655, intron 10 of 19)	intron (NM_001164655, intron 10 of 19)	-17828.0	NM_007991	14113.0	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60286267-2	chr2	60285767	60286767	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-1783.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-5349678-1	chr5	5349178	5350178	+	642.0	f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	MERVL-int|LTR|ERVL	30573.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-41109067-1	chr9	41108567	41109567	+	642.0	f1_balb.idr	intron (NM_176860, intron 1 of 13)	MIRc|SINE|MIR	-29561.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	0.0	10.0	0.5	4.0	0.0	0.5
Merged-chr15-13417251-2	chr15	13416751	13417751	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-243576.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-66434470-2	chr13	66433970	66434970	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290196, intron 1 of 3)	B3|SINE|B2	6648.0	NM_183119	76803.0	Mm.183391	NM_183119	ENSMUSG00000074832	2410141K09Rik	4930482J15Rik|Ayu21-35|Gt(pU21)35Imeg	RIKEN cDNA 2410141K09 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-183321937-2	chr1	183321437	183322437	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181732, intron 8 of 9)	B4A|SINE|B4	-24644.0	NR_151660	71678.0	Mm.392270	NM_027861	ENSMUSG00000046836	Brox	0610010K06Rik	BRO1 domain and CAAX motif containing	protein-coding	0.0	0.0	2.0	0.0	6.5	1.0
Merged-chr17-87277625-2	chr17	87277125	87278125	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_015506, intron 2 of 4)	ORR1E|LTR|ERVL-MaLR	5189.0	NR_015506	74597.0	Mm.63783	NR_015506	ENSMUSG00000085287	4833418N02Rik	-	RIKEN cDNA 4833418N02 gene	ncRNA	0.0	5.0	0.0	6.5	1.5	2.0
Merged-chr9-32272263-2	chr9	32271763	32272763	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48014.0	NM_177379	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148604965-1	chr4	148604465	148605465	+	642.0	f0_balb.idr	TTS (NM_010767)	TTS (NM_010767)	2421.0	NM_001003893	17175.0	Mm.378962	NM_010767	ENSMUSG00000028979	Masp2	MASP-2|MAp19	mannan-binding lectin serine peptidase 2	protein-coding	8.5	0.0	1.5	0.0	0.0	0.0
Merged-chr12-80134320-1	chr12	80133820	80134820	+	642.0	f1_c57bl6.idr	Intergenic	Intergenic	-1476.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	3.0	0.0	1.5	2.0	0.0	0.5
Merged-chr9-57519717-2	chr9	57519217	57520217	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-1515.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21374803-2	chr5	21374303	21375303	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008013, intron 1 of 1)	MIRb|SINE|MIR	2130.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-97848797-2	chr16	97848297	97849297	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359077, intron 1 of 23)	intron (NM_001359077, intron 1 of 23)	2430.0	NM_144789	114604.0	Mm.328741	NM_144789	ENSMUSG00000014039	Prdm15	C21orf83|E130018M06Rik|ORF62|Zfp298	PR domain containing 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113646478-2	chr13	113645978	113646978	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17198.0	NM_019960	56534.0	Mm.41410	NM_019960	ENSMUSG00000051456	Hspb3	2310035K17Rik|AI844863|Hsbp3|spb3	heat shock protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99395156-1	chr15	99394656	99395656	+	642.0	f1_c57bl6.idr	intron (NM_001171036, intron 2 of 10)	intron (NM_001171036, intron 2 of 10)	1937.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	34.0	94.0	64.5	68.5	159.0	91.5
Merged-chr6-92786114-2	chr6	92785614	92786614	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175314, intron 28 of 29)	intron (NM_175314, intron 28 of 29)	-79930.0	NM_001081146	243548.0	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73770241-2	chr13	73769741	73770741	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 1 of 24)	intron (NM_001360694, intron 1 of 24)	6544.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-14988068-1	chr17	14987568	14988568	+	642.0	f0_balb.idr	intron (NM_001123370, intron 9 of 11)	intron (NM_001123370, intron 9 of 11)	9204.0	NM_001123370	100041574.0	Mm.393767	NM_001123370	ENSMUSG00000036552	9030025P20Rik	D17Zt9e	RIKEN cDNA 9030025P20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80750090-1	chr7	80749590	80750590	+	642.0	f1_c57bl6.idr	intron (NM_016721, intron 14 of 37)	intron (NM_016721, intron 14 of 37)	53241.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	5.5	2.0	7.5	13.5	2.0	8.0
Merged-chr9-114979734-1	chr9	114979234	114980234	+	642.0	f1_c57bl6.idr	Intergenic	Intergenic	-45747.0	NM_175380	333433.0	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	1.0	11.5	3.5	6.5	0.0	1.0
Merged-chr2-131983474-2	chr2	131982974	131983974	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32437.0	NM_001278520	26434.0	Mm.180750	NM_023043	ENSMUSG00000027338	Prnd	AI450264|Dpl|PrPLP|doppel	prion like protein doppel	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69318417-1	chr3	69317917	69318917	+	642.0	f1_c57bl6.idr	intron (NM_178726, intron 1 of 3)	intron (NM_178726, intron 1 of 3)	1499.0	NM_178726	242083.0	Mm.40577	NM_178726	ENSMUSG00000027784	Ppm1l	3222401G13|5930404J21Rik|AI481720|AW045850|PP2C|PP2Cepsilon|Pp2ce|Ppp2ce|mKIAA4175	protein phosphatase 1 (formerly 2C)-like	protein-coding	0.0	11.0	0.5	5.5	1.0	0.5
Merged-chr13-80257815-2	chr13	80257315	80258315	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-625569.0	NR_153410	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27355804-3	chr14	27355300	27356300	+	642.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	-5589.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34301028-1	chr17	34300528	34301528	+	642.0	f1_c57bl6.idr	Intergenic	Intergenic	-4839.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	35.0	26.5	23.0	19.0	38.0	30.0
Merged-chr7-19020595-2	chr7	19020095	19021095	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008260, intron 1 of 1)	intron (NM_008260, intron 1 of 1)	2944.0	NM_008260	15377.0	Mm.42260	NM_008260	ENSMUSG00000040891	Foxa3	Hnf-3g|Hnf3g|Tcf-3g|Tcf3g	forkhead box A3	protein-coding	7.0	0.0	1.5	2.0	0.0	1.0
Merged-chr11-46699076-1	chr11	46698576	46699576	+	642.0	f1_balb.idr	promoter-TSS (NM_001161355)	promoter-TSS (NM_001161355)	-246.0	NM_001161355	171284.0	Mm.234654	NM_134249	ENSMUSG00000040413	Timd2	AA816106|AU019358|AU019662|C78111|G9D3|TIM-2|Tim2	T cell immunoglobulin and mucin domain containing 2	protein-coding	5.5	24.0	15.0	9.0	14.5	3.5
Merged-chr14-63147272-1	chr14	63146772	63147772	+	642.0	f0_balb.idr	intron (NM_001360211, intron 7 of 7)	intron (NM_001360211, intron 7 of 7)	24810.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-60799900-2	chr19	60799393	60800393	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9200.0	NM_010123	13669.0	Mm.2238	NM_010123	ENSMUSG00000024991	Eif3a	A830012B05Rik|Csma|Eif3|Eif3s10|mKIAA0139	eukaryotic translation initiation factor 3, subunit A	protein-coding	2.0	10.5	2.5	0.0	3.5	10.5
Merged-chr4-83230162-1	chr4	83229662	83230662	+	642.0	f1_c57bl6.idr	intron (NM_027238, intron 19 of 19)	intron (NM_027238, intron 19 of 19)	94027.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	5.5	9.0	3.0	7.0	3.0	6.5
Merged-chr5-139669181-2	chr5	139668693	139669693	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67140.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	0.0	2.5	2.0	0.0	0.0	0.0
Merged-chr11-20263824-2	chr11	20263324	20264324	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14400.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	1.5	0.0	0.0	1.0	0.0	0.0
Merged-chr13-104863538-2	chr13	104863065	104864065	+	642.0	f0_balb.idr|f1_balb.idr	exon (NM_029984, exon 1 of 3)	exon (NM_029984, exon 1 of 3)	328.0	NM_029984	77803.0	Mm.159995	NM_029984	ENSMUSG00000042655	Fam159b	A930021C24Rik|Shisal2b	family with sequence similarity 159, member B	protein-coding	0.0	0.0	1.0	0.0	0.0	1.5
Merged-chr11-69578139-2	chr11	69577639	69578639	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144824, intron 2 of 9)	B1_Mus2|SINE|Alu	1185.0	NM_144824	216853.0	Mm.31586	NM_144824	ENSMUSG00000041346	Wrap53	BC021790|Wdr79	WD repeat containing, antisense to Trp53	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118101787-2	chr11	118101287	118102287	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167746, intron 21 of 80)	intron (NM_001167746, intron 21 of 80)	27432.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-47244387-2	chr13	47243869	47244869	+	642.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001170643, exon 8 of 8)	exon (NM_001170643, exon 8 of 8)	50366.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	2.0	0.0	0.0	0.0	0.0	7.5
Merged-chr4-14960977-2	chr4	14960477	14961477	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178617, intron 10 of 12)	intron (NM_178617, intron 10 of 12)	30336.0	NM_001243100	100038514.0	Mm.331495	NM_001243100		Gm11837	-	predicted gene 11837	protein-coding	0.0	0.0	0.0	0.5	0.0	0.5
Merged-chr5-110782806-2	chr5	110782306	110783306	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2191.0	NM_001025562	56361.0	Mm.23528	NM_019700	ENSMUSG00000029507	Pus1	A730013B20Rik|MPUS1|mPus1p	pseudouridine synthase 1	protein-coding	4.0	2.0	0.0	0.5	1.5	4.0
Merged-chr19-10865284-2	chr19	10864784	10865784	+	642.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133804, exon 4 of 11)	exon (NM_133804, exon 4 of 11)	4495.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4304584-2	chr18	4304084	4305084	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B4|LTR|ERVK	48369.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84001533-1	chr8	84001033	84002033	+	642.0	f1_balb.idr	promoter-TSS (NM_183097)	promoter-TSS (NM_183097)	-173.0	NM_183097	73453.0	Mm.75101	NM_183097	ENSMUSG00000046408	1700067K01Rik	-	RIKEN cDNA 1700067K01 gene	protein-coding	2.5	3.0	1.5	1.5	0.0	5.0
Merged-chr1-138128057-2	chr1	138127557	138128557	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	47069.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-156563270-1	chr3	156562770	156563770	+	642.0	f0_c57.idr	intron (NM_001039094, intron 1 of 6)	intron (NM_001039094, intron 1 of 6)	1476.0	NM_001039094	320840.0	Mm.317293	NM_177274	ENSMUSG00000040037	Negr1	5330422G01Rik|KILON|Ntra	neuronal growth regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103958839-2	chr11	103958339	103959339	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4783.0	NM_008740	18195.0	Mm.260117	NM_008740	ENSMUSG00000034187	Nsf	AI316878|AU020090|AU067812|SKD2	N-ethylmaleimide sensitive fusion protein	protein-coding	0.0	15.0	0.0	0.0	14.5	0.0
Merged-chr8-101125725-2	chr8	101125224	101126224	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	1659387.0	NM_009866	12552.0	Mm.1571	NM_009866	ENSMUSG00000031673	Cdh11	Cad11|OSF-4	cadherin 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64538541-1	chr17	64538041	64539041	+	642.0	f0_balb.idr	intron (NR_045899, intron 1 of 3)	intron (NR_045899, intron 1 of 3)	17049.0	NR_045899	100043582.0	Mm.11170	NR_045899	ENSMUSG00000073377	AU016765	-	expressed sequence AU016765	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137115428-2	chr5	137114928	137115928	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201373, intron 1 of 2)	intron (NM_201373, intron 1 of 2)	779.0	NM_201373	384309.0	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20710903-2	chr16	20710403	20711403	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009900, intron 10 of 23)	intron (NM_009900, intron 10 of 23)	5733.0	NM_009900	12724.0	Mm.177761	NM_009900	ENSMUSG00000022843	Clcn2	AL118368|ClC-2|Clc2|nmf240	chloride channel, voltage-sensitive 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90101246-1	chr3	90100746	90101746	+	642.0	f1_c57bl6.idr	TTS (NM_022314)	TTS (NM_022314)	-2886.0	NM_029937	77595.0	Mm.159949	NM_029937	ENSMUSG00000027939	Nup210l	4930548O11Rik|R26-EGFP|Tg(Gt(ROSA)26Sor-EGFP)130910Eps	nucleoporin 210-like	protein-coding	8.0	6.0	8.0	5.5	3.0	10.5
Merged-chr4-47395709-2	chr4	47395209	47396209	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312869, intron 2 of 7)	intron (NM_001312869, intron 2 of 7)	9493.0	NM_001312869	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-90915007-2	chr1	90914507	90915507	+	642.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053015)	promoter-TSS (NM_053015)	-93.0	NM_053015	171531.0	Mm.105208	NM_053015	ENSMUSG00000026303	Mlph	2210418F23Rik|5031433I09Rik|AW228792|D1Wsu84e|Slac-2a|l(1)-3Rk|l1Rk3|ln	melanophilin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58986524-2	chr9	58986024	58987024	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008684, intron 2 of 28)	L1MC4|LINE|L1	49917.0	NM_001042752	18007.0	Mm.42249	NM_008684	ENSMUSG00000032340	Neo1	2610028H22Rik|AI327052|D930014N22Rik|Igdcc2	neogenin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-138529307-2	chr3	138528807	138529807	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007917, intron 2 of 7)	intron (NM_007917, intron 2 of 7)	2039.0	NM_001313980	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	12.0	10.0	3.0	12.0	10.0	2.5
Merged-chr17-45740429-2	chr17	45739929	45740929	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 1 of 4)	intron (NR_152153, intron 1 of 4)	5923.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	0.0	6.0	2.5	0.0	2.0	0.0
Merged-chr2-104121640-1	chr2	104121140	104122140	+	642.0	f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1129.0	NM_026634	68243.0	Mm.158191	NM_026634	ENSMUSG00000032671	A930018P22Rik	-	RIKEN cDNA A930018P22 gene	protein-coding	1.0	0.5	3.5	0.0	2.0	1.5
Merged-chr14-29970736-1	chr14	29970236	29971236	+	642.0	f0_balb.idr	intron (NM_019979, intron 2 of 4)	MTC|LTR|ERVL-MaLR	2356.0	NM_019979	80795.0	Mm.104491	NM_019979	ENSMUSG00000042682	Selenok	1110001C03Rik|AA673253|HSPC030|Hsp30|Selk	selenoprotein K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31557440-5	chr17	31556979	31557979	+	641.983337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7294.0	NR_027493	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8959931-2	chr3	8959550	8960550	+	641.924988	f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	4096.0	NM_001025262	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-30057665-2	chr11	30057165	30058165	+	641.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MuRRS-int|LTR|ERV1	-31632.0	NM_146016	237711.0	Mm.445271	NM_146016	ENSMUSG00000044072	Eml6	2900083P10Rik|C230094A16Rik|EMAP-6	echinoderm microtubule associated protein like 6	protein-coding	0.0	4.0	2.5	0.0	0.0	0.0
Merged-chr9-22324870-2	chr9	22324370	22325370	+	641.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	5820.0	NR_033622	625603.0	Mm.37987	NR_033622		Gm6607	EG625603	40S ribosomal protein S20 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87152760-3	chr17	87152261	87153261	+	641.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42181.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	9.0	5.0	9.5	40.0	55.5	29.0
Merged-chr14-57856239-3	chr14	57855707	57856707	+	641.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360097, intron 7 of 13)	B2_Mm2|SINE|B2	29968.0	NM_026401	67840.0	Mm.319530	NM_026401	ENSMUSG00000021967	Mrpl57	2610025P17Rik|AV005697|Mrp63	mitochondrial ribosomal protein L57	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3212952-3	chr5	3212459	3213459	+	641.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130934.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78429846-3	chr9	78429332	78430332	+	641.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_173386)	TTS (NM_173386)	13405.0	NR_125721	214763.0	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5061181-2	chr11	5060681	5061681	+	641.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145216)	TTS (NM_145216)	3053.0	NM_145216	75668.0	Mm.374836	NM_145216	ENSMUSG00000034209	Rasl10a	2210403B10Rik|AI852688	RAS-like, family 10, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27827796-2	chr17	27827296	27828296	+	641.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-7254.0	NM_001271511	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	9.0	20.5	19.0	11.0	15.5	17.5
Merged-chr14-75828589-2	chr14	75828089	75829089	+	641.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	16375.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-15364305-2	chr9	15363805	15364805	+	641.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-6517.0	NM_176976	319675.0	Mm.218317	NM_176976	ENSMUSG00000046111	Cep295	5830418K08Rik|5832426L23Rik|Gm1131|Kiaa1731	centrosomal protein 295	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24255642-2	chr7	24255142	24256142	+	641.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_018791, intron 1 of 3)	intron (NM_018791, intron 1 of 3)	848.0	NM_018791	54678.0	Mm.468052	NM_018791	ENSMUSG00000030486	Zfp108	-	zinc finger protein 108	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-52614201-3	chr18	52613711	52614711	+	641.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1704.0	NM_025749	66758.0	Mm.251599	NM_025749	ENSMUSG00000046886	Zfp474	4933409D10Rik|Znf474	zinc finger protein 474	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-22356595-3	chr10	22356087	22357087	+	641.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-5307.0	NM_020030	56554.0	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110777252-3	chr12	110776762	110777762	+	641.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347428, intron 1 of 2)	B3|SINE|B2	39330.0	NM_001347428	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-118855336-3	chr12	118854823	118855823	+	641.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8994.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-26342363-1	chr12	26341863	26342863	+	641.75	f0_balb.idr	intron (NM_080563, intron 2 of 8)	intron (NM_080563, intron 2 of 8)	-4347.0	NR_130981	75243.0	Mm.444753	NR_130981	ENSMUSG00000114048	4930549C15Rik	-	RIKEN cDNA 4930549C15 gene	ncRNA	0.0	0.5	1.0	3.0	11.0	3.0
Merged-chr16-90282355-2	chr16	90281851	90282851	+	641.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346799, intron 1 of 19)	intron (NM_001346799, intron 1 of 19)	2135.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-4963411-3	chr1	4962896	4963896	+	641.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177795, intron 2 of 5)	MTD|LTR|ERVL-MaLR	55338.0	NM_001290372	58175.0	Mm.103771	NM_021374	ENSMUSG00000002459	Rgs20	2900073E09Rik|Rgsz1	regulator of G-protein signaling 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127428172-3	chr10	127427669	127428669	+	641.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359246, intron 1 of 23)	intron (NM_001359246, intron 1 of 23)	7302.0	NM_001359243	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17293015-3	chr16	17292520	17293520	+	641.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001983, intron 41 of 54)	intron (NM_001001983, intron 41 of 54)	16720.0	NM_177473	224019.0	Mm.246388	NM_177473	ENSMUSG00000055692	Tmem191c	4933405M22Rik|D16Bwg1494e|MNCb-4137	transmembrane protein 191C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148793269-2	chr5	148792777	148793777	+	641.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15314.0	NR_131106	78015.0	Mm.243839	NR_131106	ENSMUSG00000085740	4930505K14Rik	-	RIKEN cDNA 4930505K14 gene	ncRNA	0.0	0.0	1.0	0.0	2.5	2.0
Merged-chr9-85375279-1	chr9	85374779	85375779	+	641.666687	f0_balb.idr	Intergenic	Intergenic	-48129.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118794662-2	chr9	118794162	118795162	+	641.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 3 of 13)	intron (NM_001113514, intron 3 of 13)	82970.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	7.5	1.0	3.0	0.0	2.0	0.0
Merged-chr3-56000422-3	chr3	55999914	56000914	+	641.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030595, intron 24 of 57)	intron (NM_030595, intron 24 of 57)	153309.0	NR_033592	71182.0	Mm.195603	NR_033592	ENSMUSG00000106572	4933417G07Rik	-	SEC13 homolog pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27924900-2	chr15	27924400	27925400	+	641.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	100948.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-14890244-2	chr18	14889744	14890744	+	641.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001100449, intron 14 of 14)	intron (NM_001100449, intron 14 of 14)	-98751.0	NR_045372	74456.0	Mm.391075	NR_045372		4933424G05Rik	-	RIKEN cDNA 4933424G05 gene	ncRNA	0.0	0.5	0.0	2.0	1.0	0.0
Merged-chr6-29205342-2	chr6	29204842	29205842	+	641.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302934, intron 7 of 14)	intron (NM_001302934, intron 7 of 14)	6955.0	NM_011829	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101290393-2	chr15	101289893	101290893	+	641.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_026566, exon 3 of 3)	exon (NM_026566, exon 3 of 3)	-2819.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29655347-3	chr11	29654849	29655849	+	641.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-37549.0	NM_194053	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	3.0	4.5	0.5	2.0	2.0	1.5
Merged-chr7-100979328-3	chr7	100978817	100979817	+	641.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14951.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	0.0	15.0	0.0	2.0	3.0	0.5
Merged-chr11-116069006-2	chr11	116068506	116069506	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001009573, intron 21 of 32)	intron (NM_001009573, intron 21 of 32)	8955.0	NM_001009573	70450.0	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8639276-2	chr15	8638776	8639776	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_148938, intron 8 of 9)	intron (NM_148938, intron 8 of 9)	71531.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-76344427-2	chr10	76343927	76344927	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081419, intron 1 of 37)	RSINE1|SINE|B4	864.0	NM_001081419	64451.0	Mm.33183	NM_001081419	ENSMUSG00000020231	Dip2a	4931420H10Rik|AI426328|Dip2|Kiaa0184-hp|mKIAA0184	disco interacting protein 2 homolog A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54809918-2	chr11	54809418	54810418	+	641.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-10001.0	NR_040284	432562.0	Mm.406948	NR_040284	ENSMUSG00000086789	Lyrm7os	Gm12228	LYR motif containing 7, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122483742-2	chr8	122483242	122484242	+	641.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153775)	TTS (NM_153775)	7599.0	NR_152823	66965.0	Mm.482288	NM_153775	ENSMUSG00000049482	Ctu2	2310061F22Rik|C16orf84|Ncs2	cytosolic thiouridylase subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5932416-2	chr18	5931916	5932916	+	641.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	203682.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr10-80156910-2	chr10	80156410	80157410	+	641.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021565, exon 9 of 9)	3' UTR (NM_021565, exon 9 of 9)	7228.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-121336316-2	chr6	121335816	121336816	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144512, intron 13 of 14)	intron (NM_144512, intron 13 of 14)	-6760.0	NM_001347433	14411.0	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	3.0	0.5	0.0	0.0	2.0	0.5
Merged-chr13-60492292-2	chr13	60491792	60492792	+	641.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-109655.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	65.0	50.0	65.5	10.0	17.0	12.5
Merged-chr16-75933499-1	chr16	75932999	75933999	+	641.5	f0_balb.idr	Intergenic	Intergenic	-24233.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57776178-2	chr6	57775678	57776678	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 2 of 4)	intron (NM_146168, intron 2 of 4)	48947.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88069219-2	chr15	88068719	88069719	+	641.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-245655.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-142077176-1	chr4	142076676	142077676	+	641.5	f0_balb.idr	intron (NM_145402, intron 1 of 2)	ID_B1|SINE|B4	-7122.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45666313-1	chr14	45665813	45666813	+	641.5	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-8170.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	67.5	153.0	95.5	67.0	210.0	127.5
Merged-chr17-43091125-2	chr17	43090625	43091625	+	641.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	67166.0	NR_045155	545207.0	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	0.0	0.5	1.5	3.5	3.0	4.5
Merged-chr19-47140046-2	chr19	47139546	47140546	+	641.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081271)	TTS (NM_001081271)	-1752.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	2.5	1.5	3.5	0.5	1.5	3.5
Merged-chr9-77826435-2	chr9	77825935	77826935	+	641.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71900.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	36.0	83.5	44.0	22.0	78.0	60.5
Merged-chr15-76240731-2	chr15	76240231	76241231	+	641.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163575, exon 8 of 11)	exon (NM_001163575, exon 8 of 11)	2709.0	NM_001163576	671535.0	Mm.373750	NM_001163575	ENSMUSG00000063268	Parp10	-	poly (ADP-ribose) polymerase family, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-69585406-2	chr2	69584906	69585906	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081088, intron 1 of 78)	CpG	661.0	NM_001081088	14725.0	Mm.23847	NM_001081088	ENSMUSG00000027070	Lrp2	AI315343|AW536255|D230004K18Rik|Gp330|Megalin|b2b1625.2Clo	low density lipoprotein receptor-related protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-98785626-2	chr1	98785126	98786126	+	641.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	364502.0	NM_027584	70866.0	Mm.389164	NM_027584	ENSMUSG00000026336	Slco6d1	4921511I05Rik	solute carrier organic anion transporter family, member 6d1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-93354549-2	chr13	93354049	93355049	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_147176, intron 4 of 9)	B3A|SINE|B2	46515.0	NM_152134	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-143154422-2	chr4	143153922	143154922	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001256380, intron 6 of 7)	intron (NM_001256380, intron 6 of 7)	-18260.0	NR_105988	102465618.0		NR_105988	ENSMUSG00000106597	Mir7021	mmu-mir-7021	microRNA 7021	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135651432-2	chr7	135650932	135651932	+	641.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316681)	promoter-TSS (NM_001316681)	-467.0	NM_001316681	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-18503724-2	chr5	18503224	18504224	+	641.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-143311.0	NM_010305	14677.0	Mm.254629	NM_010305	ENSMUSG00000057614	Gnai1	AU046200|Gialpha1|Gnai-1	guanine nucleotide binding protein (G protein), alpha inhibiting 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83161866-1	chr8	83161366	83162366	+	641.5	f1_c57bl6.idr	Intergenic	Intergenic	-3486.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	0.0	5.0	4.0	8.5	9.0	3.0
Merged-chr4-141197701-2	chr4	141197201	141198201	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172518, intron 7 of 9)	(TG)n|Simple_repeat|Simple_repeat	-16255.0	NM_001081174	76166.0	Mm.271064	NM_001081174	ENSMUSG00000073733	Rsg1	6330545A04Rik|Gm723|b2b2804Clo|b2b2827Clo	REM2 and RAB-like small GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-31501425-2	chr12	31500916	31501916	+	641.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-1800.0	NM_001253848	104836.0	Mm.273270	NM_134048	ENSMUSG00000020659	Cbll1	AI467391|Hakai|c-Cbl-like	Casitas B-lineage lymphoma-like 1	protein-coding	0.0	2.5	0.0	0.0	0.0	0.0
Merged-chr6-115815163-2	chr6	115814663	115815663	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110506, intron 6 of 8)	RSINE1|SINE|B4	-6420.0	NM_172086	19951.0	Mm.104368	NM_172086	ENSMUSG00000057841	Rpl32	AU020185|rpL32-3A	ribosomal protein L32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34250245-2	chr10	34249745	34250745	+	641.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-31945.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83256478-2	chr15	83255978	83256978	+	641.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4704.0	NM_001004150	239559.0	Mm.323805	NM_001004150	ENSMUSG00000047878	A4galt	-	alpha 1,4-galactosyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-84665545-2	chr7	84665054	84666054	+	641.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001360577, intron 1 of 7)	intron (NM_001360577, intron 1 of 7)	13842.0	NM_022985	65098.0	Mm.209349	NM_022985	ENSMUSG00000030629	Zfand6	3110005P07Rik|Awp1|Za20d3	zinc finger, AN1-type domain 6	protein-coding	16.0	1.0	1.5	1.5	0.0	1.0
Merged-chr10-120219497-2	chr10	120218997	120219997	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026617, intron 3 of 6)	B2_Mm1a|SINE|B2	-7563.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166666818-2	chr2	166666318	166667318	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	47014.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82918656-2	chr18	82918156	82919156	+	641.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033307, exon 3 of 3)	non-coding (NR_033307, exon 3 of 3)	1904.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115474676-2	chr11	115474176	115475176	+	641.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361594)	promoter-TSS (NM_001361594)	-991.0	NM_177778	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111270382-2	chr9	111269882	111270882	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026810, intron 1 of 18)	intron (NM_026810, intron 1 of 18)	1226.0	NM_026810	17350.0	Mm.486383	NM_026810	ENSMUSG00000032498	Mlh1	1110035C23Rik|AI317206|AI325952|AI561766	mutL homolog 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29425598-2	chr2	29425098	29426098	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290489, intron 2 of 6)	intron (NM_001290489, intron 2 of 6)	47084.0	NM_001290490	68975.0	Mm.330109	NM_026896	ENSMUSG00000026799	Med27	1500015J03Rik|2310042P07Rik|AA682045|Crsp8|D2Ertd434e	mediator complex subunit 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-67181331-2	chr1	67180831	67181831	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080809, intron 21 of 37)	intron (NM_001080809, intron 21 of 37)	58304.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127019815-2	chr7	127019315	127020315	+	641.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001102563, exon 2 of 4)	exon (NM_001102563, exon 2 of 4)	1396.0	NM_001102563	69017.0	Mm.392047	NM_001102563	ENSMUSG00000045114	Prrt2	1500031I19Rik|AI195361|DSPB3	proline-rich transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5834563-2	chr13	5834063	5835063	+	641.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23529.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5609273-2	chr17	5608773	5609773	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	RMER17A|LTR|ERVK	116673.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-118449687-2	chr1	118449187	118450187	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359330, intron 2 of 39)	intron (NM_001359330, intron 2 of 39)	9578.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	2.5	0.0	0.0	2.5	0.0	0.0
Merged-chr4-101727147-2	chr4	101726647	101727647	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146146, intron 1 of 18)	MTC|LTR|ERVL-MaLR	9740.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84402717-2	chr10	84402217	84403217	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 2 of 6)	intron (NM_001004363, intron 2 of 6)	37754.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128694757-2	chr2	128694257	128695257	+	641.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4158.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30693815-3	chr14	30693326	30694326	+	641.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21023.0	NM_019460	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-14704407-2	chr14	14703907	14704907	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360513, intron 1 of 25)	intron (NM_001360513, intron 1 of 25)	1382.0	NM_001360509	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	4.0	6.5	3.0	0.0	0.0	2.5
Merged-chr11-54930168-2	chr11	54929668	54930668	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271456, intron 8 of 18)	B1_Mus2|SINE|Alu	27314.0	NM_008161	14778.0	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39453756-2	chr6	39453256	39454256	+	641.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	33378.0	NR_152168	621427.0	Mm.389742	NR_152168	ENSMUSG00000068601	Gm10244	Anmkrn1	predicted gene 10244	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-90728910-2	chr10	90728411	90729411	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181398, intron 3 of 9)	intron (NM_181398, intron 3 of 9)	-100743.0	NM_001347054	77531.0	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1|AIDA-1b|C030032C09Rik|E530015N03Rik|EB-1|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	3.0	0.0	0.5	0.0	0.0	1.5
Merged-chr6-122858321-2	chr6	122857821	122858821	+	641.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CATA)n|Simple_repeat|Simple_repeat	-2164.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5597218-2	chr17	5596718	5597718	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	104618.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96820310-2	chr3	96819810	96820810	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163497, intron 1 of 3)	intron (NM_001163497, intron 1 of 3)	-5789.0	NM_018767	54215.0	Mm.34693	NM_018767	ENSMUSG00000038304	Cd160	AU045688|By55	CD160 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136520444-2	chr6	136519943	136520943	+	641.375	f0_c57.idr|f1_balb.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	1592.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	2.5	3.5	1.5	1.5	5.0	7.0
Merged-chr10-19092218-2	chr10	19091722	19092722	+	641.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-49527.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	1.0	7.5	0.5	8.5	2.5	1.5
Merged-chr10-84341641-3	chr10	84341135	84342135	+	641.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98836.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79664951-3	chr3	79664449	79665449	+	641.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212452, intron 9 of 17)	intron (NM_212452, intron 9 of 17)	35870.0	NM_029482	75939.0	Mm.221520	NM_029482	ENSMUSG00000027811	4930579G24Rik	-	RIKEN cDNA 4930579G24 gene	protein-coding	0.0	7.5	0.0	0.0	0.5	1.0
Merged-chr18-24050081-1	chr18	24049581	24050581	+	641.333313	f0_balb.idr	Intergenic	B3|SINE|B2	-29268.0	NM_021559	59057.0	Mm.417427	NM_021559	ENSMUSG00000051469	Zfp24	3526401F17Rik|5033419P20Rik|AI480505|AI642085|AL024422|KOX17|ZF-12|Zfp191|Znf24	zinc finger protein 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-54537453-2	chr8	54536953	54537953	+	641.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-7455.0	NM_029701	76687.0	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik|SPC22/23	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170173920-3	chr2	170173443	170174443	+	641.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31268.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-104940113-3	chr13	104939609	104940609	+	641.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76216.0	NM_029984	77803.0	Mm.159995	NM_029984	ENSMUSG00000042655	Fam159b	A930021C24Rik|Shisal2b	family with sequence similarity 159, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-100529154-3	chr9	100528614	100529614	+	641.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010878, intron 1 of 3)	RLTR30D_MM|LTR|ERV1	17020.0	NM_010878	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129086304-3	chr4	129085807	129086807	+	641.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19223.0	NM_025452	66260.0	Mm.25295	NM_025452	ENSMUSG00000028786	Tmem54	1810017F10Rik|AI507302	transmembrane protein 54	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75847526-2	chr14	75847026	75848026	+	641.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028481)	promoter-TSS (NR_028481)	-397.0	NR_028481	100303751.0	Mm.484707	NR_028481	ENSMUSG00000065147	Snora31	MBI-161	small nucleolar RNA, H/ACA box 31	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151816313-2	chr1	151815798	151816798	+	641.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311165, intron 20 of 20)	intron (NM_001311165, intron 20 of 20)	60924.0	NM_001311166	66967.0	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30443457-2	chr16	30442957	30443957	+	641.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54927.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	0.0	0.0	0.0	1.5	0.0	0.0
Merged-chr2-25626146-3	chr2	25625654	25626654	+	641.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007995, intron 6 of 9)	intron (NM_007995, intron 6 of 9)	1820.0	NM_007995	14133.0	Mm.10510	NM_007995	ENSMUSG00000026938	Fcna	Fcn1	ficolin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73723023-2	chr15	73722523	73723523	+	641.166687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166389)	promoter-TSS (NM_001166389)	-122.0	NM_001166390	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61606021-2	chr10	61605521	61606521	+	641.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177511, intron 1 of 3)	intron (NM_001177511, intron 1 of 3)	10537.0	NM_001177511	237362.0	Mm.131297	NM_001177511	ENSMUSG00000020090	Npffr1	Gm236|Gpr147|NPFF1|NPFF1R|OT7T022	neuropeptide FF receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95753581-2	chr16	95753081	95754081	+	641.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51174.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41933687-3	chr10	41933230	41934230	+	641.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 12 of 17)	intron (NM_001034858, intron 12 of 17)	46291.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63554660-2	chr4	63554160	63555160	+	641.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4103.0	NM_001356355	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95129662-2	chr3	95129193	95130193	+	641.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163573)	TTS (NM_001163573)	4319.0	NM_027013	69269.0	Mm.182944	NM_027013	ENSMUSG00000092607	Scnm1	3110001I17Rik|Scnm1-ps	sodium channel modifier 1	protein-coding	5.5	2.5	6.5	0.0	1.0	0.0
Merged-chr5-110838249-2	chr5	110837749	110838749	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153348, intron 1 of 5)	intron (NR_153348, intron 1 of 5)	1528.0	NM_001359835	100900.0	Mm.200231	NM_153571	ENSMUSG00000043510	Hscb	AI325508|AW049829|Hsc20	HscB iron-sulfur cluster co-chaperone	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr6-99432186-2	chr6	99431686	99432686	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053202, intron 1 of 18)	B4|SINE|B4	3159.0	NM_053202	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-9311055-2	chr9	9310555	9311555	+	641.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERVK9E_I-int|LTR|ERVK	-72042.0	NM_027823	71544.0	Mm.334955	NM_027823	ENSMUSG00000050730	Arhgap42	9030420J04Rik|BE136619	Rho GTPase activating protein 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3604047-2	chr19	3603567	3604567	+	641.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008513, exon 15 of 23)	exon (NM_008513, exon 15 of 23)	-28318.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	1.5	0.0	0.0	0.0	3.0	4.0
Merged-chr6-71923161-2	chr6	71922661	71923661	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009088, intron 6 of 33)	LTR10_RN|LTR|ERVK	14108.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32964004-1	chr12	32963504	32964504	+	641.0	f0_balb.idr	intron (NM_198710, intron 1 of 4)	intron (NM_198710, intron 1 of 4)	9818.0	NM_198710	19027.0	Mm.246304	NM_013635	ENSMUSG00000020570	Sypl	AI314763|AI604763|D12Ertd446e|PanI|Pphn|Sypl1	synaptophysin-like protein	protein-coding	32.5	12.5	9.0	8.0	16.0	8.5
Merged-chr12-3893881-2	chr12	3893381	3894381	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 1 of 17)	intron (NM_153743, intron 1 of 17)	2137.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141565390-1	chr4	141564890	141565890	+	641.0	f0_balb.idr	Intergenic	Intergenic	19228.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	19.5	14.5	16.0	7.5	9.5	2.5
Merged-chr19-24616597-1	chr19	24616097	24617097	+	641.0	f0_balb.idr	Intergenic	Intergenic	-57411.0	NM_183160	226040.0	Mm.391170	NM_183160	ENSMUSG00000048572	Tmem252	E030010A14Rik	transmembrane protein 252	protein-coding	2.0	2.5	2.0	4.0	3.0	2.5
Merged-chr19-29772598-2	chr19	29772098	29773098	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172836, intron 2 of 7)	Lx8|LINE|L1	33411.0	NM_172836	240613.0	Mm.313351	NM_172836	ENSMUSG00000046138	9930021J03Rik	Gm9832|mKIAA2026	RIKEN cDNA 9930021J03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-185224069-2	chr1	185223569	185224569	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163754, intron 2 of 34)	MER44B|DNA|TcMar-Tigger	-18857.0	NR_034044	100217449.0	Mm.429560	NR_034044	ENSMUSG00000077571	Snora36b	MBI-87	small nucleolar RNA, H/ACA box 36B	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-52997309-1	chr19	52996809	52997809	+	641.0	f1_balb.idr	intron (NM_133216, intron 17 of 20)	intron (NM_133216, intron 17 of 20)	13447.0	NR_105834	102465220.0		NR_105834	ENSMUSG00000098730	Mir6407	Gm27832|mmu-mir-6407	microRNA 6407	ncRNA	0.5	0.0	3.0	1.0	0.0	0.0
Merged-chr11-83645232-1	chr11	83644732	83645732	+	641.0	f0_balb.idr	Intergenic	Intergenic	4146.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-40538111-2	chr15	40537611	40538611	+	641.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10834.0	NR_046185	432945.0	Mm.321981	NR_046185	ENSMUSG00000056332	Gm16294	EG432945	predicted gene 16294	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152078495-2	chr4	152077995	152078995	+	641.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8368.0	NR_104381	269608.0	Mm.332102	NM_001004156	ENSMUSG00000039713	Plekhg5	BC023181|Syx	pleckstrin homology domain containing, family G (with RhoGef domain) member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-12896615-2	chr3	12896115	12897115	+	641.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-575040.0	NM_001357033	76897.0	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47797043-2	chr17	47796543	47797543	+	641.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	11299.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68851233-2	chr11	68850733	68851733	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023668, intron 1 of 8)	intron (NM_023668, intron 1 of 8)	1898.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105709438-2	chr8	105708938	105709938	+	641.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357256, exon 3 of 4)	exon (NM_001357256, exon 3 of 4)	1149.0	NM_027655	71046.0	Mm.280888	NM_027655	ENSMUSG00000013158	4933405L10Rik	-	RIKEN cDNA 4933405L10 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99711384-1	chr7	99710884	99711884	+	641.0	f0_balb.idr	promoter-TSS (NM_175316)	promoter-TSS (NM_175316)	-44.0	NM_175316	101488.0	Mm.11249	NM_175316	ENSMUSG00000030737	Slco2b1	AI060904|AI852653|OATP-B|Slc21a9	solute carrier organic anion transporter family, member 2b1	protein-coding	1.0	6.0	0.0	1.5	11.0	0.0
Merged-chr16-76284234-2	chr16	76283734	76284734	+	641.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	88815.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22100642-2	chr9	22100142	22101142	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009922, intron 1 of 6)	intron (NM_009922, intron 1 of 6)	1389.0	NM_009922	12797.0	Mm.4356	NM_009922	ENSMUSG00000001349	Cnn1	CN|CnnI	calponin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-45298145-1	chr16	45297645	45298645	+	641.0	f1_balb.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	73808.0	NM_177584	208154.0	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	3.5	3.0	4.5	4.0	3.5	5.5
Merged-chr7-81852220-1	chr7	81851720	81852720	+	641.0	f1_c57bl6.idr	Intergenic	Intergenic	-6781.0	NR_111910	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	5.5	8.0	12.0	6.5	7.0	3.5
Merged-chr17-84789305-2	chr17	84788805	84789805	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028233, intron 1 of 37)	intron (NM_028233, intron 1 of 37)	1481.0	NM_028233	72416.0	Mm.217027	NM_028233	ENSMUSG00000024120	Lrpprc	3110001K13Rik|C76645|Gp130|Lrp130|Lsfc	leucine-rich PPR-motif containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-5134334-1	chr15	5133834	5134834	+	641.0	f0_c57.idr	Intergenic	RLTR12B|LTR|ERVK	-9527.0	NM_001013367	105787.0	Mm.207004	NM_001013367	ENSMUSG00000050697	Prkaa1	AI194361|AI450832|AL024255|AMPKalpha1|C130083N04Rik	protein kinase, AMP-activated, alpha 1 catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122595074-2	chr6	122594574	122595574	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031159, intron 3 of 7)	ID|SINE|ID	7370.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	8.0	26.0	13.5	5.0	21.0	10.5
Merged-chr15-47772271-2	chr15	47771771	47772771	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081391, intron 32 of 70)	Lx7|LINE|L1	1019718.0	NM_001081391	239420.0	Mm.309363	NM_001081391	ENSMUSG00000022311	Csmd3	4930500N14Rik|mKIAA1894	CUB and Sushi multiple domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31994331-2	chr17	31993831	31994831	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028902, intron 6 of 7)	L1MEd|LINE|L1	40177.0	NM_028902	74377.0	Mm.75856	NM_028902	ENSMUSG00000002076	Hsf2bp	4932437G14Rik	heat shock transcription factor 2 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-23048234-1	chr2	23047734	23048734	+	641.0	f0_balb.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-7993.0	NM_145994	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38392768-2	chr16	38392268	38393268	+	641.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30578.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-33505004-2	chr1	33504504	33505504	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008922, intron 10 of 13)	intron (NM_008922, intron 10 of 13)	164790.0	NM_008922	19076.0	Mm.27705	NM_008922	ENSMUSG00000026134	Prim2	AI323589	DNA primase, p58 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-162626090-1	chr1	162625590	162626590	+	641.0	f0_balb.idr	Intergenic	Intergenic	-13060.0	NM_010865	17926.0	Mm.10694	NM_010865	ENSMUSG00000026697	Myoc	AI957332|GLC1A|TIGR	myocilin	protein-coding	34.0	71.0	57.5	31.5	124.5	85.0
Merged-chr13-113882839-2	chr13	113882339	113883339	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	88331.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11005356-2	chr16	11004856	11005856	+	641.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-3542.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76550615-2	chr12	76550115	76551115	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	-2690.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32251793-1	chr4	32251293	32252293	+	641.0	f1_c57bl6.idr	Intergenic	Intergenic	-165642.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	80.5	211.5	150.0	85.5	162.0	194.5
Merged-chr4-94557244-1	chr4	94556744	94557744	+	641.0	f1_c57bl6.idr	promoter-TSS (NM_026368)	promoter-TSS (NM_026368)	-448.0	NM_026368	67770.0	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	23.0	74.0	71.0	31.0	152.5	82.5
Merged-chr17-67223942-1	chr17	67223442	67224442	+	641.0	f0_c57.idr	intron (NM_001357625, intron 1 of 32)	L1MB5|LINE|L1	130517.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	5.5	48.0	20.0	17.0	8.5	6.5
Merged-chr7-99434465-1	chr7	99433965	99434965	+	641.0	f1_balb.idr	intron (NM_001362168, intron 4 of 17)	intron (NM_001362168, intron 4 of 17)	-31539.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	8.5	1.0	10.0	6.0	10.5	8.5
Merged-chr3-88620119-1	chr3	88619619	88620619	+	641.0	f1_balb.idr	promoter-TSS (NM_008487)	promoter-TSS (NM_008487)	-987.0	NM_008487	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	12.5	13.0	3.0	13.5	27.0	5.0
Merged-chr12-116415072-1	chr12	116414572	116415572	+	641.0	f1_balb.idr	intron (NM_133762, intron 6 of 28)	intron (NM_133762, intron 6 of 28)	9670.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	5.0	13.0	13.5	4.5	6.5	0.5
Merged-chr2-132005972-2	chr2	132005472	132006472	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175445, intron 4 of 10)	intron (NM_175445, intron 4 of 10)	24016.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116597327-2	chr3	116596871	116597871	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030016, intron 1 of 11)	URR1B|DNA|hAT-Charlie	2413.0	NM_001289571	72776.0	Mm.440836	NM_028349	ENSMUSG00000027959	Sass6	2810453L12Rik	SAS-6 centriolar assembly protein	protein-coding	1.0	0.0	4.0	1.5	2.5	2.5
Merged-chr11-6476814-2	chr11	6476314	6477314	+	641.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011221)	promoter-TSS (NM_011221)	-738.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	37.0	39.0	18.0	9.5	38.5	35.0
Merged-chr2-6226551-1	chr2	6226051	6227051	+	641.0	f1_c57bl6.idr	intron (NR_040333, intron 1 of 6)	intron (NR_040333, intron 1 of 6)	-13557.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	1.0	2.5	0.0	0.0	0.0	1.0
Merged-chr1-88584434-2	chr1	88583934	88584934	+	641.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32917.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34205161-2	chr17	34204661	34205661	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011530, intron 1 of 11)	intron (NM_011530, intron 1 of 11)	682.0	NM_011530	21355.0	Mm.14814	NM_011530	ENSMUSG00000024339	Tap2	ABC18|AI462429|APT2|Abcb3|Ham-2|Ham2|MTP2|PSF2|RING11|Tap-2|Y1|jas	transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	26.0	113.0	92.5	42.0	87.0	88.5
Merged-chr17-12782621-2	chr17	12782121	12783121	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027784, intron 2 of 2)	intron (NR_027784, intron 2 of 2)	-12915.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15621205-1	chr17	15620705	15621705	+	641.0	f0_balb.idr	Intergenic	Intergenic	-10583.0	NR_045431	71008.0	Mm.399492	NR_045431		4933401D09Rik	-	RIKEN cDNA 4933401D09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91327750-2	chr12	91327250	91328250	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181815, intron 9 of 25)	MTD|LTR|ERVL-MaLR	56659.0	NM_181815	75216.0	Mm.312204	NM_181815	ENSMUSG00000061533	Cep128	4930534B04Rik|5430424K18Rik|AI449708|AI480494|E230024F20	centrosomal protein 128	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101590328-2	chr11	101589828	101590828	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359325, intron 7 of 7)	intron (NM_001359325, intron 7 of 7)	8029.0	NM_001359325	217203.0	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-57409413-2	chr14	57408913	57409913	+	641.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR1C|LTR|ERV1	-10930.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20983661-2	chr11	20983161	20984161	+	641.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-107663.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91937604-2	chr16	91937104	91938104	+	641.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-5974.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104043109-2	chr3	104042609	104043609	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133853, intron 13 of 21)	B1_Mur1|SINE|Alu	-74793.0	NR_030676	100125931.0	Mm.400392	NR_030676	ENSMUSG00000089998	Phtf1os	A130049A11Rik	putative homeodomain transcription factor 1, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-60837886-1	chr19	60837386	60838386	+	641.0	f1_balb.idr	3' UTR (NM_001362384, exon 15 of 15)	3' UTR (NM_001362384, exon 15 of 15)	23542.0	NM_001362385	94281.0	Mm.48179	NM_053198	ENSMUSG00000063698	Sfxn4	-	sideroflexin 4	protein-coding	7.0	0.0	13.0	6.0	0.0	3.5
Merged-chr7-107926962-2	chr7	107926462	107927462	+	641.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL1|LINE|L1	-6560.0	NM_146775	258771.0	Mm.451662	NM_146775	ENSMUSG00000095212	Olfr473	MOR204-4	olfactory receptor 473	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123145962-2	chr5	123145462	123146462	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040398, intron 4 of 16)	intron (NM_001040398, intron 4 of 16)	3769.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-110764959-2	chr3	110764459	110765459	+	641.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-513960.0	NR_024139	99890.0	Mm.36115	NM_178891	ENSMUSG00000049300	Prmt6	AW124876|BB233495|Hrmt1l6	protein arginine N-methyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57919947-2	chr15	57919447	57920447	+	641.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001167679, exon 3 of 18)	exon (NM_001167679, exon 3 of 18)	7748.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-97356644-2	chr16	97356144	97357144	+	641.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019517)	promoter-TSS (NM_019517)	-84.0	NM_019517	56175.0	Mm.97885	NM_019517	ENSMUSG00000040605	Bace2	1110059C24Rik|AEPLC|AI850424|ALP56|ARP1|ASP1|ASP21|BAE2|CDA13|CEAP1|DRAP	beta-site APP-cleaving enzyme 2	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr5-107287379-2	chr5	107286879	107287879	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011578, intron 1 of 16)	intron (NM_011578, intron 1 of 16)	2250.0	NM_011578	21814.0	Mm.200775	NM_011578	ENSMUSG00000029287	Tgfbr3	1110036H20Rik|AU015626|AW215636|TBRIII	transforming growth factor, beta receptor III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21384023-2	chr16	21383523	21384523	+	641.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39095.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4491134-2	chr2	4490634	4491634	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 4 of 23)	intron (NM_001177843, intron 4 of 23)	-68620.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95686831-2	chr3	95686331	95687331	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301705, intron 1 of 17)	intron (NM_001301705, intron 1 of 17)	1086.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76644933-2	chr15	76644433	76645433	+	641.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019396, exon 5 of 5)	3' UTR (NM_019396, exon 5 of 5)	-5004.0	NM_183091	72749.0	Mm.358749	NM_183091	ENSMUSG00000059323	Tonsl	2810439M11Rik|Nfkbil2	tonsoku-like, DNA repair protein	protein-coding	4.5	0.0	0.0	0.0	0.0	1.0
Merged-chr11-8688454-2	chr11	8687954	8688954	+	641.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23919.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	2.0	3.0	1.0	0.0	3.5	8.0
Merged-chr8-86585798-3	chr8	86585311	86586311	+	641.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19221.0	NM_172912	244562.0	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136106593-1	chr4	136106093	136107093	+	641.0	f1_c57bl6.idr	Intergenic	Intergenic	-37229.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0.0	2.5	1.0	0.0	0.0	0.5
Merged-chr3-144701925-3	chr3	144701412	144702412	+	641.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 5 of 10)	intron (NM_001282037, intron 5 of 10)	18423.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146737351-2	chr5	146736851	146737851	+	641.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011669, exon 9 of 9)	3' UTR (NM_011669, exon 9 of 9)	57605.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	1.0	4.5	0.0	0.0	1.5	4.5
Merged-chr5-139410211-2	chr5	139409711	139410711	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177000, intron 1 of 1)	intron (NM_177000, intron 1 of 1)	3824.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102464482-2	chr12	102463982	102464982	+	641.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4652.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	4.0	14.5	4.0	11.5	10.5	2.5
Merged-chr11-106037608-3	chr11	106037051	106038051	+	641.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027946, intron 1 of 6)	intron (NM_027946, intron 1 of 6)	679.0	NM_027946	71833.0	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91783370-2	chr12	91782870	91783870	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	B3A|SINE|B2	3066.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11708856-3	chr16	11708302	11709302	+	641.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 18 of 20)	intron (NM_028964, intron 18 of 20)	-70900.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75899837-1	chr18	75899337	75900337	+	641.0	f1_balb.idr	intron (NM_145356, intron 1 of 4)	intron (NM_145356, intron 1 of 4)	79659.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	2.5	15.5	6.0	5.5	0.0	2.0
Merged-chr10-94126627-1	chr10	94126127	94127127	+	641.0	f1_balb.idr	intron (NM_053072, intron 13 of 20)	ORR1B2|LTR|ERVL-MaLR	-21304.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	5.0	5.0	7.0	1.0	9.0	1.0
Merged-chr19-45216325-1	chr19	45215825	45216825	+	641.0	f1_c57bl6.idr	Intergenic	Intergenic	18911.0	NM_010691	16814.0	Mm.116815	NM_010691	ENSMUSG00000025216	Lbx1	Lbx1h	ladybird homeobox 1	protein-coding	0.0	0.0	0.0	0.0	1.0	3.0
Merged-chr7-64750364-2	chr7	64749864	64750864	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291166, intron 14 of 14)	intron (NM_001291166, intron 14 of 14)	122676.0	NM_023239	66647.0	Mm.19944	NM_023239	ENSMUSG00000070520	Nsmce3	5730494G16Rik|AI642138|BB044375|HCA4|Mageg1|Ndnl2|mage-g1	NSE3 homolog, SMC5-SMC6 complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120677494-2	chr8	120676994	120677994	+	641.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9174.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143594675-2	chr7	143594198	143595198	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013742, intron 1 of 22)	intron (NM_013742, intron 1 of 22)	5392.0	NM_001252593	27267.0	Mm.125659	NM_013742	ENSMUSG00000010755	Cars	CA3	cysteinyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69695254-2	chr3	69694754	69695754	+	641.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26801.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70595123-2	chr11	70594623	70595623	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 1 of 30)	intron (NM_016713, intron 1 of 30)	-20771.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	14.5	40.5	31.0	28.5	42.5	47.5
Merged-chr11-109468986-2	chr11	109468486	109469486	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029842, intron 1 of 5)	B1_Mur2|SINE|Alu	4243.0	NM_134038	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69135873-1	chr11	69135373	69136373	+	641.0	f1_balb.idr	exon (NM_011786, exon 12 of 15)	exon (NM_011786, exon 12 of 15)	9496.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	16.5	16.0	16.5	19.0	19.5	21.5
Merged-chr6-4847884-1	chr6	4847384	4848384	+	641.0	f1_c57bl6.idr	Intergenic	L1MEg|LINE|L1	-55436.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	7.0	6.0	4.0	15.0	1.0	3.5
Merged-chr8-128693257-2	chr8	128692757	128693757	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010578, intron 1 of 15)	RMER4B|LTR|ERVK	7603.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-108179722-2	chr10	108179222	108180222	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027892, intron 1 of 25)	intron (NM_027892, intron 1 of 25)	17322.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108902137-2	chr3	108901637	108902637	+	641.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001356292)	TTS (NM_001356292)	9592.0	NM_025845	66921.0	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	11.0	30.0	6.5	9.5	30.0	6.5
Merged-chr11-96833164-1	chr11	96832664	96833664	+	641.0	f0_balb.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-3196.0	NM_008686	18023.0	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	2.0	0.0	8.0	2.5	10.0	12.0
Merged-chr4-134513671-1	chr4	134513171	134514171	+	641.0	f1_c57bl6.idr	intron (NM_001081099, intron 1 of 2)	B2_Mm2|SINE|B2	2672.0	NM_001081099	69885.0	Mm.141592	NM_001081099	ENSMUSG00000078521	Aunip	2610002D18Rik|Clhc1	aurora kinase A and ninein interacting protein	protein-coding	0.5	5.0	8.0	0.0	0.0	0.5
Merged-chr2-154687752-3	chr2	154687246	154688246	+	640.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	30720.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84843543-2	chr8	84843043	84844043	+	640.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007591, intron 7 of 8)	intron (NM_007591, intron 7 of 8)	-2878.0	NM_009010	19358.0	Mm.255539	NM_009010	ENSMUSG00000003813	Rad23a	2310040P19Rik|AL024030|HR23A|mHR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding	6.0	21.0	9.0	0.0	5.0	8.0
Merged-chr7-38002269-3	chr7	38001779	38002779	+	640.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011274, intron 1 of 10)	intron (NM_011274, intron 1 of 10)	17273.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	7.5	4.5	10.5	8.5	37.5	14.0
Merged-chr10-82969788-2	chr10	82969293	82970293	+	640.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME3A|LINE|L1	-15704.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	4.0	0.0	0.5	6.0	8.5	0.0
Merged-chr7-127822849-2	chr7	127822349	127823349	+	640.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_024414, intron 1 of 9)	MIRb|SINE|MIR	1682.0	NM_024414	56216.0	Mm.439759	NM_024414	ENSMUSG00000030806	Stx1b	Stx1b2|Stx1bl|Syn1b	syntaxin 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115058533-2	chr11	115058033	115059033	+	640.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172050, intron 1 of 3)	intron (NM_172050, intron 1 of 3)	3506.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142985426-2	chr7	142984954	142985954	+	640.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16190.0	NM_008554	17173.0	Mm.196417	NM_008554	ENSMUSG00000009248	Ascl2	2410083I15Rik|Mash2|bHLHa45	achaete-scute family bHLH transcription factor 2	protein-coding	1.0	5.5	2.5	0.0	2.0	2.5
Merged-chr2-79302602-3	chr2	79302098	79303098	+	640.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010576, intron 16 of 27)	intron (NM_010576, intron 16 of 27)	47172.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46936973-3	chr18	46936472	46937472	+	640.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15157.0	NM_001033446	381142.0	Mm.329423	NM_001033446	ENSMUSG00000073568	Arl14epl	Gm949	ADP-ribosylation factor-like 14 effector protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84097352-2	chr17	84096852	84097852	+	640.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18692.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123139906-2	chr5	123139406	123140406	+	640.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2287.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118827665-2	chr9	118827165	118828165	+	640.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 4 of 13)	intron (NM_001113514, intron 4 of 13)	-98871.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0.0	0.0	0.0	3.0	0.0	0.0
Merged-chr10-20310140-2	chr10	20309640	20310640	+	640.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2329.0	NM_001025392	72567.0	Mm.294783	NM_153787	ENSMUSG00000037608	Bclaf1	2610102K23Rik|2700025J07Rik|2810454G14Rik|5730534O06Rik|AI450190|AW556225|Btf|mKIAA0164	BCL2-associated transcription factor 1	protein-coding	0.0	1.0	3.0	0.0	3.0	0.5
Merged-chr2-50689634-2	chr2	50689134	50690134	+	640.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-220050.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103798878-2	chr2	103798378	103799378	+	640.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1238.0	NM_016739	53872.0	Mm.427589	NM_016739	ENSMUSG00000027184	Caprin1	AL022980|Caprin-1|Gpiap|Gpiap1|Mmgpip137|P137|rng105	cell cycle associated protein 1	protein-coding	6.0	0.5	0.0	6.0	0.5	0.0
Merged-chr19-46610619-2	chr19	46610151	46611151	+	640.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177812, intron 2 of 4)	RLTR18B|LTR|ERVK	11545.0	NM_146099	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	46.5	75.5	75.5	12.0	8.5	15.5
Merged-chr5-122715949-2	chr5	122715451	122716451	+	640.75	f0_balb.idr|f1_c57bl6.idr	intron (NM_001310718, intron 2 of 10)	intron (NM_001310718, intron 2 of 10)	8407.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	2.0	0.0	2.0	1.0	0.0	3.0
Merged-chr12-54448381-4	chr12	54447866	54448866	+	640.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57048.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41556770-3	chr4	41556267	41557267	+	640.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027993, intron 1 of 5)	intron (NM_027993, intron 1 of 5)	12760.0	NM_001159583	71901.0	Mm.39215	NM_027993	ENSMUSG00000028439	Fam219a	2310028H24Rik	family with sequence similarity 219, member A	protein-coding	15.0	42.5	23.0	3.0	0.0	0.0
Merged-chr3-138490765-3	chr3	138490295	138491295	+	640.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1413.0	NM_175224	75624.0	Mm.26833	NM_175224	ENSMUSG00000005813	Metap1	1700029C17Rik|AW047992|mKIAA0094	methionyl aminopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122925779-3	chr6	122925277	122926277	+	640.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199311, intron 2 of 5)	intron (NM_199311, intron 2 of 5)	3929.0	NM_199311	269799.0	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64683535-3	chr5	64683039	64684039	+	640.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72840.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	0.0	0.0	3.5	0.0	0.0	4.0
Merged-chr6-127467973-3	chr6	127467495	127468495	+	640.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346512, intron 1 of 5)	intron (NM_001346512, intron 1 of 5)	14368.0	NM_001346512	101187.0	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19716508-1	chr7	19716008	19717008	+	640.666687	f0_c57.idr	TTS (NM_008990)	TTS (NM_008990)	-1079.0	NM_016871	53333.0	Mm.61682	NM_016871	ENSMUSG00000002984	Tomm40	AW539759|Mom35|Tom40	translocase of outer mitochondrial membrane 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86899562-2	chr12	86899062	86900062	+	640.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14748.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57439286-2	chr9	57438786	57439786	+	640.666626	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152144, exon 2 of 8)	non-coding (NR_152144, exon 2 of 8)	450.0	NM_001357913	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53110481-2	chr4	53109981	53110981	+	640.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	49414.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	1.0	0.5	0.0	1.0	2.0
Merged-chr16-49964876-2	chr16	49964376	49965376	+	640.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9046.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56252965-2	chr19	56252465	56253465	+	640.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-34947.0	NM_001329936	226243.0	Mm.25791	NM_146101	ENSMUSG00000025075	Habp2	AI035669|FSAP|HABP|HGFAL|PHBP	hyaluronic acid binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54927651-3	chr12	54927160	54928160	+	640.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013815, exon 12 of 27)	exon (NM_013815, exon 12 of 27)	58676.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	3.5	7.0	10.0	12.5	15.5	6.0
Merged-chr3-108913018-2	chr3	108912518	108913518	+	640.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1289.0	NM_001356292	66921.0	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75504988-2	chr18	75504490	75505490	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 9 of 11)	intron (NM_201354, intron 9 of 11)	-9655.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	0.0	8.0	11.5	17.5	1.5	8.0
Merged-chr14-73210738-2	chr14	73210238	73211238	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 20 of 26)	intron (NM_009029, intron 20 of 26)	-3887.0	NR_030459	751541.0		NR_030459	ENSMUSG00000076121	Mir687	Mirn687|mir-687|mmu-mir-687	microRNA 687	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25292771-2	chr7	25292271	25293271	+	640.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_027882, exon 18 of 20)	exon (NM_027882, exon 18 of 20)	5184.0	NM_008776	18476.0	Mm.597	NM_008776	ENSMUSG00000005447	Pafah1b3	Pafahg|mus[g]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113061704-2	chr6	113061204	113062204	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008188, intron 5 of 9)	B4A|SINE|B4	15402.0	NM_008188	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78187699-2	chr10	78187199	78188199	+	640.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081055, exon 23 of 23)	3' UTR (NM_001081055, exon 23 of 23)	-2550.0	NM_029546	110816.0	Mm.103522	NM_029546	ENSMUSG00000032834	Pwp2	6530411D08Rik|Pwp2h|wdp103	PWP2 periodic tryptophan protein homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-69594222-1	chr18	69593722	69594722	+	640.5	f0_balb.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	248062.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120837638-2	chr14	120837138	120838138	+	640.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-73556.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-89452611-2	chr1	89452111	89453111	+	640.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2200.0	NM_178119	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155380209-2	chr1	155379709	155380709	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011273, intron 2 of 14)	MTE2a|LTR|ERVL-MaLR	37235.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95138972-2	chr8	95138472	95139472	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010631, intron 1 of 19)	intron (NM_010631, intron 1 of 19)	3568.0	NM_010631	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	0.0	4.0	4.0	0.0	13.0	4.0
Merged-chr14-56776982-2	chr14	56776482	56777482	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025682, intron 1 of 8)	intron (NM_025682, intron 1 of 8)	1336.0	NM_001360420	66645.0	Mm.20129	NM_025682	ENSMUSG00000021938	Pspc1	5730470C09Rik|AI327109|AI449052|PSP1	paraspeckle protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32152539-2	chr2	32152039	32153039	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172661, intron 1 of 29)	intron (NM_172661, intron 1 of 29)	1391.0	NM_001159634	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-82813332-2	chr10	82812832	82813832	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_038042, intron 1 of 2)	B1_Mus2|SINE|Alu	1209.0	NR_038042	70003.0	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr17-71126282-2	chr17	71125782	71126782	+	640.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010867, exon 38 of 38)	exon (NM_010867, exon 38 of 38)	-57250.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-85941394-2	chr16	85940894	85941894	+	640.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40269.0	NM_011782	23794.0	Mm.112933	NM_011782	ENSMUSG00000022894	Adamts5	9530092O11Rik|ADAM-TS5|ADAMTS1|ADAMTS11|ADMP-2|AI481094|ASMP-2	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80100826-2	chr12	80100326	80101326	+	640.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12187.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180298928-2	chr1	180298428	180299428	+	640.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31548.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43965061-2	chr13	43964561	43965561	+	640.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-156106.0	NR_045285	328235.0	Mm.188356	NR_045285	ENSMUSG00000089815	Gm5083	A730030A06	predicted gene 5083	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52536838-2	chr13	52536338	52537338	+	640.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6002.0	NM_001024474	68203.0	Mm.29362	NM_001024474	ENSMUSG00000047842	Diras2	2900052J15Rik|AI414999	DIRAS family, GTP-binding RAS-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-8672885-2	chr16	8672385	8673385	+	640.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025821)	promoter-TSS (NM_025821)	-732.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-31032933-2	chr7	31032433	31033433	+	640.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001111073, exon 8 of 8)	3' UTR (NM_001111073, exon 8 of 8)	7384.0	NR_106017	102465635.0		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	6.5	33.0	31.0	4.0	29.5	32.5
Merged-chr14-25674218-2	chr14	25673718	25674718	+	640.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19952.0	NM_134084	105675.0	Mm.41656	NM_134084	ENSMUSG00000021868	Ppif	AW457192|CyP-D|CyP-F|CypD|PPIase	peptidylprolyl isomerase F (cyclophilin F)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-105377305-2	chr7	105376805	105377805	+	640.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001195727, exon 2 of 3)	exon (NM_001195727, exon 2 of 3)	2267.0	NM_001329995	100503879.0	Mm.380109	NM_001195727	ENSMUSG00000078611	Gm5901	EG545989	predicted gene 5901	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102579894-2	chr4	102579439	102580439	+	640.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	-7619.0	NM_001177982	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	10.5	9.5	2.5	10.5	10.5	2.5
Merged-chr8-25558129-2	chr8	25557629	25558629	+	640.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010206, exon 5 of 18)	exon (NM_010206, exon 5 of 18)	-2046.0	NR_110510	102633315.0	Mm.437828	NR_110510	ENSMUSG00000086134	Gm16159	-	predicted gene 16159	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141102194-2	chr4	141101694	141102694	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177867, intron 7 of 14)	intron (NM_177867, intron 7 of 14)	13849.0	NM_177867	329972.0	Mm.247201	NM_177867	ENSMUSG00000045004	Spata21	4933414G08	spermatogenesis associated 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65764607-2	chr17	65764107	65765107	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	Lx5|LINE|L1	8145.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr12-12276642-2	chr12	12276142	12277142	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	(TG)n|Simple_repeat|Simple_repeat	14503.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0.5	1.0	7.0	0.5	1.0	3.5
Merged-chr4-9666827-2	chr4	9666327	9667327	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	2335.0	NM_023066	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0.0	6.0	3.0	0.0	0.0	0.0
Merged-chr12-8675645-2	chr12	8675145	8676145	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030723, intron 1 of 20)	intron (NM_030723, intron 1 of 20)	964.0	NM_030723	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50466261-2	chr17	50465761	50466761	+	640.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-43286.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88724198-2	chr4	88723698	88724698	+	640.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1690.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115425373-2	chr8	115424873	115425873	+	640.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	281521.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25576504-2	chr2	25576004	25577004	+	640.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001005424, exon 1 of 1)	3' UTR (NM_001005424, exon 1 of 1)	-1633.0	NM_029293	75454.0	Mm.458079	NM_029293	ENSMUSG00000036504	Phpt1	1700008C22Rik|PHP|Php14	phosphohistidine phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107113336-1	chr11	107112836	107113836	+	640.5	f0_balb.idr	intron (NM_001359590, intron 1 of 27)	intron (NM_001359590, intron 1 of 27)	18586.0	NM_176850	207165.0	Mm.343986	NM_176850	ENSMUSG00000040481	Bptf	9430093H17Rik|Falz	bromodomain PHD finger transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-79300836-2	chr14	79300336	79301336	+	640.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_025427, exon 2 of 5)	exon (NM_025427, exon 2 of 5)	799.0	NM_025427	66214.0	Mm.29811	NM_025427	ENSMUSG00000022018	Rgcc	1190002H23Rik|Rgc-32|Rgc32	regulator of cell cycle	protein-coding	4.0	5.5	3.0	4.0	8.0	2.0
Merged-chr1-127782335-2	chr1	127781835	127782835	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028399, intron 2 of 8)	L1MB2|LINE|L1	8171.0	NM_028399	72949.0	Mm.268672	NM_028399	ENSMUSG00000026349	Ccnt2	2900041I18Rik|C81304|CycT2|CycT2a|CycT2b	cyclin T2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46157235-2	chr17	46156735	46157735	+	640.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3684.0	NM_025649	66591.0	Mm.272024	NM_025649	ENSMUSG00000034509	Mad2l1bp	0610009D16Rik|2510031P20Rik|AU018945|AW550977|C76045|CMT2A|CMT2B|Mad2lbp|mKIAA0110	MAD2L1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98447701-2	chr7	98447201	98448201	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130693, intron 2 of 18)	intron (NM_001130693, intron 2 of 18)	7285.0	NM_001130693	14918.0	Mm.389928	NM_001034890	ENSMUSG00000074003	Gucy2d	-	guanylate cyclase 2d	protein-coding	9.5	0.0	0.0	0.0	0.5	0.0
Merged-chr13-95958942-2	chr13	95958439	95959439	+	640.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029210)	TTS (NM_029210)	-67017.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	5.0	40.5	13.0	19.0	2.5	14.5
Merged-chr10-96201483-2	chr10	96200983	96201983	+	640.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24724.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4731613-2	chr16	4731113	4732113	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136066, intron 1 of 5)	ORR1A3|LTR|ERVL-MaLR	5252.0	NM_001136066	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25653280-2	chr7	25652780	25653780	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007533, intron 1 of 8)	Lx8|LINE|L1	5481.0	NM_007533	12039.0	Mm.25848	NM_007533	ENSMUSG00000060376	Bckdha	-	branched chain ketoacid dehydrogenase E1, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-16615841-2	chr3	16615341	16616341	+	640.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-201253.0	NR_153388	102632048.0	Mm.417635	NR_153388		Gm30223	-	predicted gene, 30223	ncRNA	1.5	0.0	0.0	1.5	0.0	0.0
Merged-chr16-96159494-2	chr16	96158994	96159994	+	640.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001001492, exon 11 of 11)	exon (NM_001001492, exon 11 of 11)	14075.0	NM_207301	71446.0	Mm.255063	NM_207301	ENSMUSG00000023147	Wrb	5530402J05Rik|C030018G21Rik|Chd5	tryptophan rich basic protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131190098-2	chr2	131189598	131190598	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111075, intron 3 of 14)	intron (NM_001111075, intron 3 of 14)	3150.0	NM_001111075	12531.0	Mm.38444	NM_023117	ENSMUSG00000027330	Cdc25b	AI604853	cell division cycle 25B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71178259-2	chr17	71177759	71178759	+	640.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5|LINE|L1	-5273.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	83.5	182.0	144.0	56.5	198.0	156.5
Merged-chr8-107027208-2	chr8	107026708	107027708	+	640.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4118.0	NM_126165	116733.0	Mm.236004	NM_126165	ENSMUSG00000031913	Vps4a	4930589C15Rik|AI325971|AW553189	vacuolar protein sorting 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17277489-2	chr16	17276989	17277989	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177473, intron 6 of 9)	CpG-5550	1189.0	NM_177473	224019.0	Mm.246388	NM_177473	ENSMUSG00000055692	Tmem191c	4933405M22Rik|D16Bwg1494e|MNCb-4137	transmembrane protein 191C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30530959-2	chr13	30530459	30531459	+	640.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14357.0	NM_025710	66694.0	Mm.181933	NM_025710	ENSMUSG00000038462	Uqcrfs1	4430402G14Rik|AI875505	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-143945595-2	chr2	143945095	143946095	+	640.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30264.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136655259-2	chr1	136654759	136655759	+	640.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28137.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148579197-2	chr2	148578710	148579710	+	640.333374	f0_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-93405.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124485714-2	chr5	124485214	124486214	+	640.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029532, intron 1 of 1)	intron (NM_029532, intron 1 of 1)	2559.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88306701-2	chr1	88306201	88307201	+	640.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134252)	promoter-TSS (NM_134252)	-11.0	NM_134252	171382.0	Mm.218753	NM_134252	ENSMUSG00000036251	Trpm8	CMR1|LTRPC6|LTrpC-6|TRPP8|Trp-p8	transient receptor potential cation channel, subfamily M, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105796887-3	chr3	105796393	105797393	+	640.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145541, intron 1 of 7)	intron (NM_145541, intron 1 of 7)	4488.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	20.5	56.5	21.5	36.0	45.0	31.5
Merged-chr9-48740320-2	chr9	48739820	48740820	+	640.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033324, intron 3 of 6)	intron (NM_001033324, intron 3 of 6)	95625.0	NM_001033324	235320.0	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding	0.0	2.5	1.0	0.0	0.0	4.0
Merged-chr12-52010716-3	chr12	52010208	52011208	+	640.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-4201.0	NM_001347404	328092.0	Mm.2821	NM_029545	ENSMUSG00000020956	Dtd2	4930578F06Rik|6530401N04Rik|B830049N13Rik	D-tyrosyl-tRNA deacylase 2	protein-coding	0.0	2.5	0.0	3.5	0.5	0.5
Merged-chr2-118729336-3	chr2	118728845	118729845	+	640.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290790)	promoter-TSS (NM_001290790)	-907.0	NM_001290790	18796.0	Mm.215156	NM_177568	ENSMUSG00000040061	Plcb2	AI550384|B230205M18Rik|B230399N12	phospholipase C, beta 2	protein-coding	36.0	22.0	19.0	4.5	17.0	32.5
Merged-chr11-23565926-3	chr11	23565425	23566425	+	640.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-7083.0	NR_004857	100134990.0	Mm.247328	NR_004857	ENSMUSG00000085415	Selenok-ps1	Gm12060	selenoprotein K, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44348757-3	chr10	44348261	44349261	+	640.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358596, intron 6 of 6)	intron (NM_001358596, intron 6 of 6)	-10915.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24012441-1	chr16	24011941	24012941	+	640.333313	f0_balb.idr	Intergenic	Intergenic	-23589.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-78303095-3	chr16	78302624	78303624	+	640.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025192, intron 1 of 6)	intron (NM_001025192, intron 1 of 6)	1453.0	NM_001276263	13052.0	Mm.66222	NM_009988	ENSMUSG00000022865	Cxadr	2610206D03Rik|AU016810|AW553441|CAR|MCAR|MCVADR	coxsackie virus and adenovirus receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135935975-2	chr5	135935473	135936473	+	640.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-1332.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	3.0	1.0	4.5	0.5	3.5	5.5
Merged-chr14-54482740-3	chr14	54482244	54483244	+	640.311096	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	6644.0	NM_080726	140743.0	Mm.274727	NM_080726	ENSMUSG00000022176	Rem2	AW411893	rad and gem related GTP binding protein 2	protein-coding	0.0	0.0	0.0	2.0	0.0	6.0
Merged-chr7-99145250-2	chr7	99144750	99145750	+	640.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-4106.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	3.0	13.5	9.0	3.0	0.0	7.5
Merged-chr10-7816684-3	chr10	7816198	7817198	+	640.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026141, intron 12 of 12)	intron (NM_026141, intron 12 of 12)	-15772.0	NM_172785	237256.0	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	0.0	4.0	1.5	0.0	6.0	4.0
Merged-chr10-95867748-3	chr10	95867248	95868248	+	640.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie18a|DNA|hAT-Charlie	-72915.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13753880-4	chr8	13753385	13754385	+	640.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3771.0	NM_027276	69957.0	Mm.182412	NM_027276	ENSMUSG00000038416	Cdc16	2700071J12Rik|2810431D22Rik|APC6	CDC16 cell division cycle 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106427375-2	chr1	106426917	106427917	+	640.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	119214.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0.5	8.0	0.0	4.0	0.0	1.5
Merged-chr18-67612428-3	chr18	67611947	67612947	+	640.166687	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	28908.0	NM_001357523	225659.0	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54962059-2	chr11	54961559	54962559	+	640.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199275, intron 1 of 18)	intron (NM_001199275, intron 1 of 18)	881.0	NM_021327	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128273079-3	chr10	128272585	128273585	+	640.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019963, intron 1 of 23)	B2_Mm1a|SINE|B2	2587.0	NM_019963	20847.0	Mm.293120	NM_019963	ENSMUSG00000040033	Stat2	1600010G07Rik|AW496480	signal transducer and activator of transcription 2	protein-coding	7.0	0.5	6.0	2.0	7.5	10.0
Merged-chr10-79665376-2	chr10	79664876	79665876	+	640.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358785, intron 2 of 3)	intron (NM_001358785, intron 2 of 3)	817.0	NM_001358785	17123.0	Mm.391556	NM_013591	ENSMUSG00000020310	Madcam1	AV211525|MAdCAM-1	mucosal vascular addressin cell adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33977760-2	chr2	33977260	33978260	+	640.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89814.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-11217891-3	chr12	11217366	11218366	+	640.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8918.0	NM_019544	56184.0	Mm.117113	NM_019544	ENSMUSG00000047002	Msgn1	Msgn|pMsgn1	mesogenin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-73726678-3	chr6	73726196	73727196	+	640.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-255675.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-23157840-2	chr8	23157340	23158340	+	640.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029002, exon 3 of 3)	3' UTR (NM_029002, exon 3 of 3)	4569.0	NM_029002	74561.0	Mm.290028	NM_029002	ENSMUSG00000063672	Nkx6-3	9130417I07Rik|Nkx6.3	NK6 homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17614838-2	chr16	17614338	17615338	+	640.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-4516.0	NM_001164611	77626.0	Mm.34659	NM_029945	ENSMUSG00000005899	Smpd4	4122402O22Rik	sphingomyelin phosphodiesterase 4	protein-coding	0.0	0.0	0.0	0.0	1.5	0.0
Merged-chr19-6840071-2	chr19	6839571	6840571	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019924, intron 2 of 17)	intron (NM_019924, intron 2 of 17)	556.0	NM_019924	56613.0	Mm.20914	NM_019924	ENSMUSG00000024952	Rps6ka4	1110069D02Rik|90kDa|AI848992|Msk2|mMSK2	ribosomal protein S6 kinase, polypeptide 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111734372-1	chr8	111733872	111734872	+	640.0	f1_c57bl6.idr	intron (NM_009954, intron 1 of 6)	intron (NM_009954, intron 1 of 6)	-2236.0	NM_001198839	12927.0	Mm.3758	NM_009954	ENSMUSG00000031955	Bcar1	AI385681|Cas|Crkas	breast cancer anti-estrogen resistance 1	protein-coding	0.0	0.0	0.0	2.0	0.5	0.0
Merged-chr3-15861490-1	chr3	15860990	15861990	+	640.0	f0_balb.idr	Intergenic	RLTR45|LTR|ERVK	-13003.0	NM_001173459	100038947.0	Mm.330924	NM_001173459	ENSMUSG00000074677	LOC100038947	-	signal-regulatory protein beta 1-like	protein-coding	2.0	16.5	4.5	9.0	13.0	4.5
Merged-chr8-67044318-2	chr8	67043818	67044818	+	640.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	184101.0	NM_001163564	234344.0	Mm.334561	NM_001163564	ENSMUSG00000014907	Naf1	Gm174	nuclear assembly factor 1 ribonucleoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82102395-2	chr11	82101895	82102895	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011331, intron 1 of 2)	intron (NM_011331, intron 1 of 2)	550.0	NM_011331	20293.0	Mm.867	NM_011331	ENSMUSG00000035352	Ccl12	MCP-5|Scya12	chemokine (C-C motif) ligand 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10818557-2	chr16	10818057	10819057	+	640.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16502.0	NM_001162932	223970.0	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117359653-2	chr5	117359147	117360147	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021539, intron 1 of 8)	intron (NM_021539, intron 1 of 8)	2342.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	0.0	10.0	6.5	0.0	5.0	8.5
Merged-chr19-29527025-2	chr19	29526525	29527525	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081319, intron 1 of 25)	B1F1|SINE|Alu	4743.0	NM_001081319	226089.0	Mm.353838	NM_177641	ENSMUSG00000038658	Ric1	C030046E11Rik|C130057E09Rik|Kiaa1432	RAB6A GEF complex partner 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105483464-1	chr4	105482964	105483964	+	640.0	f0_balb.idr	Intergenic	Intergenic	326117.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	7.5	12.5	17.5	22.0	20.5	37.0
Merged-chr10-63384544-2	chr10	63384044	63385044	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253685, intron 1 of 4)	B1_Mus1|SINE|Alu	-2019.0	NM_013888	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76374701-2	chr12	76374201	76375201	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178744, intron 1 of 1)	intron (NM_178744, intron 1 of 1)	4435.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90563996-1	chr2	90563496	90564496	+	640.0	f1_balb.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	16651.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	2.0	5.0	6.5	2.0	4.5	3.5
Merged-chr9-21989851-1	chr9	21989351	21990351	+	640.0	f0_balb.idr	promoter-TSS (NM_023622)	promoter-TSS (NM_023622)	-398.0	NM_023622	71746.0	Mm.110594	NM_023622	ENSMUSG00000040146	Rgl3	1300003D20Rik|mFLJ00153	ral guanine nucleotide dissociation stimulator-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9500900-1	chr3	9500400	9501400	+	640.0	f0_balb.idr	intron (NM_133218, intron 2 of 8)	intron (NM_133218, intron 2 of 8)	97822.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	1.0	0.0	4.0	0.0	0.0	0.0
Merged-chr1-193839095-3	chr1	193838611	193839611	+	640.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-331581.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50160053-1	chr6	50159553	50160553	+	640.0	f0_balb.idr	intron (NM_001361248, intron 4 of 13)	intron (NM_001361248, intron 4 of 13)	49193.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	9.0	4.0	0.5	10.0	12.5	5.0
Merged-chr3-10731518-2	chr3	10731011	10732011	+	640.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-291381.0	NM_001127191	74718.0	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108476481-2	chr6	108475981	108476981	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 46 of 61)	intron (NM_010585, intron 46 of 61)	-13262.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	2.5	10.5	21.0	21.0	35.0	41.5
Merged-chr12-91708020-2	chr12	91707520	91708520	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	78416.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64055185-2	chr9	64054685	64055685	+	640.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5356.0	NR_040713	68697.0	Mm.491042	NR_040713	ENSMUSG00000097036	1110036E04Rik	-	RIKEN cDNA 1110036E04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-29411774-2	chr18	29411274	29412274	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045391, intron 7 of 7)	Lx3_Mus|LINE|L1	-30426.0	NR_045395	78199.0	Mm.243850	NR_045395		4930527G23Rik	-	RIKEN cDNA 4930527G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-23908845-1	chr5	23908345	23909345	+	640.0	f0_balb.idr	Intergenic	Intergenic	56612.0	NR_028536	100217436.0		NR_028536		Snord93	Gm22397|MBII-336	small nucleolar RNA, C/D box 93	snoRNA	7.0	0.0	7.5	7.0	2.0	21.0
Merged-chr7-66292228-2	chr7	66291728	66292728	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 16 of 33)	intron (NM_146191, intron 16 of 33)	89496.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10603996-2	chr19	10603496	10604496	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145496, intron 1 of 16)	intron (NM_145496, intron 1 of 16)	262.0	NM_145496	225913.0	Mm.374868	NM_145496	ENSMUSG00000034371	Tkfc	BC021917|Dak	triokinase, FMN cyclase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128558961-1	chr8	128558461	128559461	+	640.0	f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-126693.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	5.0	30.0	33.0	42.0	74.5	58.5
Merged-chr18-82924998-2	chr18	82924498	82925498	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177464, intron 1 of 5)	intron (NM_001177464, intron 1 of 5)	-4438.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113657702-2	chr6	113657202	113658202	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	B4A|SINE|B4	19235.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-98023840-1	chr8	98023340	98024340	+	640.0	f1_c57bl6.idr	Intergenic	L1Md_A|LINE|L1	-988047.0	NR_110579	100873092.0	Mm.414599	NR_110579	ENSMUSG00000089819	Gm15679	-	predicted gene 15679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-85391440-2	chr9	85390940	85391940	+	640.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64290.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-14043539-1	chr10	14043039	14044039	+	640.0	f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	(TG)n|Simple_repeat|Simple_repeat	77160.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	20.5	23.5	38.5	13.0	42.5	52.0
Merged-chr9-6248822-2	chr9	6248322	6249322	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357397, intron 1 of 6)	GA-rich|Low_complexity|Low_complexity	17725.0	NM_027942	71829.0	Mm.141452	NM_027942	ENSMUSG00000047619	Ddi1	1700011N24Rik	DNA-damage inducible 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45689652-1	chr14	45689152	45690152	+	640.0	f1_c57bl6.idr	Intergenic	Intergenic	-31509.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	10.0	1.5	2.0	3.0	8.0	0.0
Merged-chr19-16068306-2	chr19	16067806	16068806	+	640.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-64525.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	14.5	3.0	3.0	3.5	0.0	1.5
Merged-chr17-86249549-1	chr17	86249049	86250049	+	640.0	f0_balb.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	37629.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	8.0	1.0	3.5	0.0	0.5	1.5
Merged-chr2-165339035-2	chr2	165338535	165339535	+	640.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-12556.0	NM_207706	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-74961318-2	chr5	74960815	74961815	+	640.0	f0_balb.idr|f0_c57.idr	intron (NR_045866, intron 2 of 4)	intron (NR_045866, intron 2 of 4)	12121.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163590336-1	chr2	163589836	163590836	+	640.0	f0_balb.idr	Intergenic	Intergenic	-11978.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111459757-2	chr9	111459257	111460257	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172928, intron 1 of 4)	MTEa|LTR|ERVL-MaLR	20676.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91709956-2	chr12	91709456	91710456	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	76480.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79206797-2	chr11	79206297	79207297	+	640.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	36227.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80098404-2	chr10	80097904	80098904	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359637, intron 1 of 3)	RMER4A|LTR|ERVK	2783.0	NM_001359635	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5064905-2	chr2	5064405	5065405	+	640.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181848)	promoter-TSS (NM_181848)	-788.0	NM_001356487	71648.0	Mm.116942	NM_181848	ENSMUSG00000026672	Optn	4930441O07Rik|FIP2|HYPL|NRP	optineurin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-5288619-3	chr15	5288142	5289142	+	640.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44455.0	NM_008965	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-85394547-2	chr17	85394047	85395047	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028576, intron 5 of 10)	intron (NM_028576, intron 5 of 10)	223849.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27723011-2	chr2	27722511	27723511	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	12428.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19521935-2	chr3	19521435	19522435	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025489, intron 1 of 4)	intron (NM_025489, intron 1 of 4)	-9312.0	NM_001163537	66326.0	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-148906871-1	chr1	148906371	148907371	+	640.0	f0_balb.idr	Intergenic	Intergenic	1015568.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51457071-2	chr10	51456571	51457571	+	640.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23541.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-63430580-2	chr13	63430091	63431091	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347515, intron 1 of 15)	intron (NM_001347515, intron 1 of 15)	1154.0	NM_001347515	14088.0	Mm.126106	NM_007985	ENSMUSG00000021461	Fancc	Facc	Fanconi anemia, complementation group C	protein-coding	7.0	14.0	7.0	1.5	0.0	4.0
Merged-chr1-54883202-1	chr1	54882702	54883702	+	640.0	f0_balb.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	43185.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27048705-2	chr17	27048205	27049205	+	640.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8599.0	NM_080553	16440.0	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	2.5	7.0	0.0	2.5	7.0	0.0
Merged-chr1-36083538-2	chr1	36083038	36084038	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	15138.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129822849-2	chr4	129822349	129823349	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	2141.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	23.0	37.5	14.5	23.0	37.5	14.5
Merged-chr18-36518012-2	chr18	36517512	36518512	+	640.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-2207.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-35034921-2	chr5	35034421	35035421	+	640.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6588.0	NM_019447	54426.0	Mm.27369	NM_019447	ENSMUSG00000029102	Hgfac	HGFA	hepatocyte growth factor activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3340425-2	chr12	3339925	3340925	+	640.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-24707.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49185358-2	chr13	49184858	49185858	+	640.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2189.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-69017125-2	chr2	69016620	69017620	+	640.0	f0_balb.idr|f0_c57.idr	intron (NM_001347161, intron 4 of 10)	intron (NM_001347161, intron 4 of 10)	-118680.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40473851-1	chr12	40473351	40474351	+	640.0	f0_balb.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	27798.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32418827-2	chr18	32418327	32419327	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 7 of 17)	intron (NM_001360876, intron 7 of 17)	-40543.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35248427-2	chr18	35247927	35248927	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009818, intron 13 of 17)	intron (NM_009818, intron 13 of 17)	-33403.0	NM_178005	107065.0	Mm.39900	NM_178005	ENSMUSG00000071862	Lrrtm2	AI851755|BB129880|C630011A14Rik|mKIAA0416	leucine rich repeat transmembrane neuronal 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34034679-2	chr13	34034179	34035179	+	640.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009068, exon 11 of 11)	3' UTR (NM_009068, exon 11 of 11)	-2962.0	NM_026512	68021.0	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	0.0	1.0	0.0	0.0	2.5	1.0
Merged-chr7-38188008-2	chr7	38187489	38188489	+	640.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_028166, intron 1 of 3)	intron (NM_028166, intron 1 of 3)	4202.0	NM_028166	72244.0	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	0.0	0.0	2.0	1.0	12.5	2.0
Merged-chr2-172998439-1	chr2	172997939	172998939	+	640.0	f1_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1678.0	NM_175112	66679.0	Mm.4113	NM_175112	ENSMUSG00000027509	Rae1	3230401I12Rik|D2Ertd342e|MNRP|MNRP41	ribonucleic acid export 1	protein-coding	0.5	0.0	9.0	0.0	11.0	4.0
Merged-chr5-20888320-2	chr5	20887820	20888820	+	640.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	5867.0	NM_177601	212090.0	Mm.347525	NM_177601	ENSMUSG00000045435	Tmem60	BC027828	transmembrane protein 60	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-124910787-1	chr3	124910287	124911287	+	640.0	f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-329696.0	NR_015460	384775.0	Mm.489851	NR_015460	ENSMUSG00000039174	1700003H04Rik	4930538K10Rik|4933400D22Rik	RIKEN cDNA 1700003H04 gene	ncRNA	10.5	18.0	5.5	21.5	0.0	4.0
Merged-chr7-47058849-2	chr7	47058349	47059349	+	640.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8209.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98066772-1	chr7	98066272	98067272	+	640.0	f1_balb.idr	intron (NM_008663, intron 33 of 48)	intron (NM_008663, intron 33 of 48)	42476.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	0.0	2.5	0.0	6.5	1.5	0.0
Merged-chr19-55662331-1	chr19	55661831	55662831	+	640.0	f0_balb.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	39873.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-3908401-1	chr13	3907901	3908901	+	640.0	f0_balb.idr	intron (NM_019671, intron 2 of 11)	intron (NM_019671, intron 2 of 11)	9819.0	NM_019671	56349.0	Mm.22261	NM_019671	ENSMUSG00000021215	Net1	Net1a|mNET1	neuroepithelial cell transforming gene 1	protein-coding	0.0	4.0	2.0	0.0	3.0	3.0
Merged-chr12-40562365-2	chr12	40561865	40562865	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	116312.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102701604-2	chr12	102701104	102702104	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	3265.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19861192-2	chr7	19860692	19861692	+	640.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033419, exon 1 of 6)	5' UTR (NM_001033419, exon 1 of 6)	107.0	NM_001033419	330483.0	Mm.260192	NM_001033419	ENSMUSG00000014686	Ceacam16	Gm769	carcinoembryonic antigen-related cell adhesion molecule 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-39426913-1	chr8	39426413	39427413	+	640.0	f0_balb.idr	Intergenic	Intergenic	128933.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	0.0	2.0	1.5	17.5	23.0	20.5
Merged-chr12-16801175-1	chr12	16800675	16801675	+	640.0	f1_c57bl6.idr	promoter-TSS (NM_015764)	promoter-TSS (NM_015764)	-289.0	NM_015764	268527.0	Mm.428062	NM_015764	ENSMUSG00000036523	Greb1	5730583K22Rik|9130004E13|AF180470|AU023194|mKIAA0575	gene regulated by estrogen in breast cancer protein	protein-coding	4.5	0.0	0.0	0.0	0.0	3.0
Merged-chr12-55479693-2	chr12	55479193	55480193	+	640.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	12954.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-20986226-2	chr5	20985726	20986726	+	640.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001356590)	TTS (NM_001356590)	-34404.0	NM_001080977	242860.0	Mm.254286	NM_001080977	ENSMUSG00000039968	Rsbn1l	8430412F05Rik|AI447441|C330002G24Rik	round spermatid basic protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8608399-2	chr11	8607899	8608899	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	56136.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62223584-2	chr11	62223084	62224084	+	640.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001281818)	TTS (NM_001281818)	-25400.0	NM_007413	11541.0	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-65810952-1	chr15	65810452	65811452	+	640.0	f0_balb.idr	intron (NM_133766, intron 1 of 22)	intron (NM_133766, intron 1 of 22)	23932.0	NM_001356582	76740.0	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	2.0	7.0	1.0	15.5	6.5	5.0
Merged-chr1-151619452-3	chr1	151618968	151619968	+	640.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	48095.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-9102659-2	chr5	9102159	9103159	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081029, intron 2 of 4)	intron (NM_001081029, intron 2 of 4)	1922.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56564851-1	chr18	56564351	56565351	+	640.0	f1_balb.idr	intron (NM_001162989, intron 1 of 4)	RSINE1|SINE|B4	2282.0	NM_001162989	56698.0	Mm.214569	NM_019996	ENSMUSG00000008301	Phax	2810055C14Rik|4933427L19Rik|AU018701|AU018854|D18Ertd65e|Rnuxa|p55	phosphorylated adaptor for RNA export	protein-coding	0.0	0.0	4.0	0.0	5.5	1.0
Merged-chr14-55113913-2	chr14	55113413	55114413	+	640.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177049, exon 3 of 6)	exon (NM_177049, exon 3 of 6)	3022.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118849712-1	chr7	118849212	118850212	+	640.0	f1_c57bl6.idr	intron (NM_001168219, intron 2 of 3)	intron (NM_001168219, intron 2 of 3)	5901.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	0.0	3.0	2.5	1.0	7.0	1.5
Merged-chr6-50383666-2	chr6	50383166	50384166	+	640.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027881)	promoter-TSS (NM_027881)	-829.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21598355-2	chr9	21597855	21598855	+	640.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5524.0	NM_138303	74766.0	Mm.475712	NM_138303	ENSMUSG00000032182	Yipf2	1300010K09Rik	Yip1 domain family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41691238-2	chr10	41690738	41691738	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 2 of 47)	intron (NM_001358562, intron 2 of 47)	25225.0	NM_001358562	75973.0	Mm.228517	NM_029493	ENSMUSG00000075225	Ccdc162	5033413D22Rik|Ccdc162p|Gm29096|Gm61|Gm6976	coiled-coil domain containing 162	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55193776-2	chr16	55193276	55194276	+	640.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	89461.0	NM_178720	239852.0	Mm.245045	NM_178720	ENSMUSG00000064310	Zpld1	9430016A21Rik	zona pellucida like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148115624-4	chr4	148115052	148116052	+	639.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027426, intron 2 of 6)	intron (NM_027426, intron 2 of 6)	15146.0	NM_027426	70433.0	Mm.275288	NM_027426	ENSMUSG00000029005	Draxin	2610109H07Rik|neucrin	dorsal inhibitory axon guidance protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74709573-2	chr17	74709073	74710073	+	639.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8177.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	3.0	3.0	1.5	0.0	0.0	0.0
Merged-chr9-40991113-3	chr9	40990611	40991611	+	639.833313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_019465, intron 3 of 9)	intron (NM_019465, intron 3 of 9)	13517.0	NM_019465	54698.0	Mm.42791	NM_019465	ENSMUSG00000032021	Crtam	-	cytotoxic and regulatory T cell molecule	protein-coding	7.5	8.5	7.5	9.5	9.5	3.0
Merged-chr4-102649140-3	chr4	102648635	102649635	+	639.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	59292.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.0	6.5	3.0	2.0	30.5	15.5
Merged-chr19-17251574-3	chr19	17251050	17252050	+	639.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	87955.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	105.5	225.5	166.0	66.5	91.5	74.0
Merged-chr6-114577547-2	chr6	114577047	114578047	+	639.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	-65550.0	NM_028835	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-17723808-3	chr18	17723292	17724292	+	639.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME2|LINE|L1	-142802.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45644283-3	chr14	45643778	45644778	+	639.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176845, intron 1 of 12)	intron (NM_176845, intron 1 of 12)	13775.0	NR_039593	100628600.0		NR_039593	ENSMUSG00000093167	Mir5131	mmu-mir-5131|mu-mir-5131	microRNA 5131	ncRNA	1.5	4.0	2.0	0.0	0.0	4.0
Merged-chr9-124081607-2	chr9	124081107	124082107	+	639.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEy-int|LTR|ERVK	-20576.0	NM_009915	12772.0	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70080084-3	chr11	70079614	70080614	+	639.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-12530.0	NM_007493	11890.0	Mm.1357	NM_007493	ENSMUSG00000040963	Asgr2	ASGPR2|Asgr|Asgr-2|HL-2	asialoglycoprotein receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132273022-2	chr4	132272522	132273522	+	639.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1353.0	NM_025579	66464.0	Mm.331926	NM_025579	ENSMUSG00000028899	Taf12	20kDa|2810422D08Rik|AW557038|Taf2J	TATA-box binding protein associated factor 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125074151-3	chr6	125073661	125074661	+	639.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163268, intron 1 of 1)	intron (NM_001163268, intron 1 of 1)	2884.0	NM_001163268	381810.0	Mm.333386	NM_001163268	ENSMUSG00000067714	Lpar5	GPR93|Gm1072|Gpr92|LPA5	lysophosphatidic acid receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97548122-3	chr11	97547640	97548640	+	639.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 3 of 19)	intron (NM_018873, intron 3 of 19)	26986.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65543335-2	chr9	65542835	65543835	+	639.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	36752.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69269887-2	chr11	69269387	69270387	+	639.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32865.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81493557-3	chr7	81493077	81494077	+	639.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001193274)	TTS (NM_001193274)	348.0	NM_021492	11775.0	Mm.322894	NM_021492	ENSMUSG00000062444	Ap3b2	AI549966|AU042881|Naptb|[b]-NAP|beta-NAP|beta3B	adaptor-related protein complex 3, beta 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28294692-3	chr7	28294189	28295189	+	639.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007866, exon 7 of 9)	exon (NM_007866, exon 7 of 9)	-3503.0	NM_175033	280621.0	Mm.212777	NM_175033	ENSMUSG00000046750	Selenov	Selv	selenoprotein V	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80666787-3	chr10	80666293	80667293	+	639.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021462, exon 14 of 14)	3' UTR (NM_021462, exon 14 of 14)	9500.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59223004-3	chr11	59222513	59223513	+	639.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007476, intron 1 of 4)	intron (NM_007476, intron 1 of 4)	5149.0	NM_001130408	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	24.5	60.0	47.0	14.5	73.0	67.0
Merged-chr1-135723844-2	chr1	135723344	135724344	+	639.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360782, intron 1 of 5)	intron (NM_001360782, intron 1 of 5)	3781.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-56980826-2	chr1	56980326	56981326	+	639.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358580)	promoter-TSS (NM_001358580)	-578.0	NM_001358580	212712.0	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding	0.0	10.5	0.5	0.0	2.0	0.0
Merged-chr10-13960800-2	chr10	13960256	13961256	+	639.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	-5319.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.0	5.0	2.5	5.5	7.5	3.5
Merged-chr9-108558315-2	chr9	108557815	108558815	+	639.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175143, intron 9 of 9)	RMER17C|LTR|ERVK	-2186.0	NM_011830	23918.0	Mm.6065	NM_011830	ENSMUSG00000062867	Impdh2	IMPD	inosine monophosphate dehydrogenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66342501-2	chr7	66342043	66343043	+	639.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 3 of 33)	B3|SINE|B2	39181.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	14.0	48.5	26.0	7.5	34.0	20.5
Merged-chr5-146303667-3	chr5	146303171	146304171	+	639.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001359990)	TTS (NM_001359990)	72421.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54034617-4	chr6	54034090	54035090	+	639.512512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5342.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	3.5	0.5	0.0	0.0	0.0	0.5
Merged-chr4-133005876-2	chr4	133005376	133006376	+	639.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5630.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102576552-2	chr4	102576052	102577052	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 6 of 14)	ID4|SINE|ID	6492.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	8.0	16.0	14.0	4.0	10.5	20.0
Merged-chr1-150997751-2	chr1	150997251	150998251	+	639.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-4316.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5696450-2	chr17	5695950	5696950	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 3 of 8)	intron (NM_146073, intron 3 of 8)	-102207.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83142986-2	chr15	83142486	83143486	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 1 of 7)	intron (NM_001347082, intron 1 of 7)	6392.0	NM_178627	73826.0	Mm.23758	NM_178627	ENSMUSG00000041815	Poldip3	1110008P04Rik|AA408269|AL022852|C77954|PDIP46|SKAR|mKIAA1649	polymerase (DNA-directed), delta interacting protein 3	protein-coding	0.0	1.0	0.5	0.0	0.5	0.5
Merged-chr8-71680685-1	chr8	71680185	71681185	+	639.5	f1_c57bl6.idr	exon (NM_010589, exon 8 of 25)	exon (NM_010589, exon 8 of 25)	4302.0	NM_010589	16453.0	Mm.249645	NM_010589	ENSMUSG00000031805	Jak3	fae|wil	Janus kinase 3	protein-coding	9.5	18.0	17.5	8.0	1.0	0.0
Merged-chr8-104245981-2	chr8	104245481	104246481	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045642, intron 2 of 8)	intron (NR_045642, intron 2 of 8)	2577.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19066917-2	chr7	19066417	19067417	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031255, intron 3 of 5)	intron (NM_031255, intron 3 of 5)	-9283.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	0.0	0.0	2.0	0.0	0.0	2.0
Merged-chr11-103417321-2	chr11	103416821	103417821	+	639.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4657.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	1.5	1.0	0.5	0.5	1.0	3.0
Merged-chr17-71162486-2	chr17	71161986	71162986	+	639.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CTATA)n|Simple_repeat|Simple_repeat	-21046.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	18.5	8.0	5.0	10.0	5.5	6.5
Merged-chr2-174561886-2	chr2	174561386	174562386	+	639.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-81648.0	NM_001099328	100043757.0	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	-	zinc finger protein 831	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77910208-2	chr10	77909708	77910708	+	639.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_138301, exon 34 of 34)	exon (NM_138301, exon 34 of 34)	-7672.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-12562400-2	chr5	12561900	12562900	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028882, intron 11 of 17)	intron (NM_028882, intron 11 of 17)	179234.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-62935906-2	chr2	62935406	62936406	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133207, intron 2 of 15)	RMER6C|LTR|ERVK	248381.0	NM_133207	170738.0	Mm.242532	NM_133207	ENSMUSG00000059742	Kcnh7	9330137I11Rik|Kv11.3|erg3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40054145-2	chr10	40053645	40054645	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 4 of 5)	intron (NM_001114332, intron 4 of 5)	-28877.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116492449-2	chr7	116491949	116492949	+	639.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11920.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47742118-2	chr9	47741620	47742620	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	76088.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	7.5	13.0	9.0	7.0	21.0	6.5
Merged-chr5-147435537-1	chr5	147435037	147436037	+	639.5	f0_balb.idr	intron (NM_028291, intron 1 of 18)	intron (NM_028291, intron 1 of 18)	5381.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112210817-2	chr5	112210317	112211317	+	639.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045377)	TTS (NR_045377)	4054.0	NR_045378	75569.0	Mm.243721	NR_045377	ENSMUSG00000101683	1700028D13Rik	-	RIKEN cDNA 1700028D13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65089818-4	chr5	65089339	65090339	+	639.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17729.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120579312-2	chr9	120578812	120579812	+	639.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	1981.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-25673629-2	chr19	25673129	25674129	+	639.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_145831, exon 2 of 4)	exon (NM_145831, exon 2 of 4)	1218.0	NM_145831	226049.0	Mm.275572	NM_145831	ENSMUSG00000048138	Dmrt2	Terra	doublesex and mab-3 related transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-14554320-2	chr14	14553820	14554820	+	639.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_I-int|LTR|ERV1	-148705.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98632288-2	chr15	98631788	98632788	+	639.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001044741)	promoter-TSS (NM_001044741)	-40.0	NM_001044741	12297.0	Mm.3544	NM_007581	ENSMUSG00000003352	Cacnb3	Beta3|CAB3|Ca(v)beta3|Cchb3	calcium channel, voltage-dependent, beta 3 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59293821-2	chr11	59293321	59294321	+	639.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3070.0	NM_009522	22416.0	Mm.1367	NM_009522	ENSMUSG00000009900	Wnt3a	Wnt-3a|vt	wingless-type MMTV integration site family, member 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-92870818-2	chr17	92870318	92871318	+	639.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	-328199.0	NM_001315503	11516.0	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78865097-2	chr15	78864597	78865597	+	639.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9568.0	NM_025622	107753.0	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	0.0	4.5	12.0	0.0	0.0	1.0
Merged-chr2-39009703-2	chr2	39009203	39010203	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028809, intron 1 of 3)	intron (NM_028809, intron 1 of 3)	1564.0	NM_028809	74192.0	Mm.38155	NM_028809	ENSMUSG00000026755	Arpc5l	2010015J01Rik|AI852867|ARC16-2|AW555592|AW742746	actin related protein 2/3 complex, subunit 5-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3322434-2	chr2	3321934	3322934	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008708, intron 10 of 13)	intron (NM_008708, intron 10 of 13)	10194.0	NM_001013376	227522.0	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150078104-2	chr4	150077604	150078604	+	639.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-9399.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10845740-2	chr17	10845240	10846240	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317726, intron 1 of 6)	RMER17C-int|LTR|ERVK	5381.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55503325-2	chr12	55502825	55503825	+	639.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-10678.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134269764-2	chr4	134269264	134270264	+	639.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-15658.0	NM_001099296	72690.0	Mm.100168	NM_001099296	ENSMUSG00000050105	Grrp1	2810043G13Rik|Fam110d	glycine/arginine rich protein 1	protein-coding	4.0	10.0	3.0	0.0	1.0	2.0
Merged-chr11-118295381-2	chr11	118294881	118295881	+	639.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5137.0	NM_001033528	72344.0	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27727031-2	chr2	27726531	27727531	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	16448.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128948351-2	chr4	128947851	128948851	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301841, intron 5 of 8)	intron (NM_001301841, intron 5 of 8)	14104.0	NM_172875	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145199396-2	chr4	145198896	145199896	+	639.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4391.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80740713-2	chr10	80740213	80741213	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007460, intron 1 of 30)	PB1D10|SINE|Alu	1562.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52588604-2	chr13	52588104	52589104	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198977, intron 1 of 13)	intron (NM_001198977, intron 1 of 13)	5167.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4222726-2	chr19	4222226	4223226	+	639.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001310038, exon 4 of 4)	3' UTR (NM_001310038, exon 4 of 4)	8337.0	NM_001310039	56708.0	Mm.347919	NM_019952	ENSMUSG00000040663	Clcf1	BSF-3|Bsf3|CLC|NNT-1	cardiotrophin-like cytokine factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-109087761-2	chr9	109087261	109088261	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025689, intron 1 of 3)	intron (NM_025689, intron 1 of 3)	5265.0	NM_025689	66658.0	Mm.128227	NM_025689	ENSMUSG00000025645	Ccdc51	5730568A12Rik|AI551049	coiled-coil domain containing 51	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr16-81514667-2	chr16	81514167	81515167	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113208, intron 10 of 17)	intron (NM_001113208, intron 10 of 17)	313970.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-75439780-2	chr9	75439263	75440263	+	639.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1761.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr5-69552199-2	chr5	69551699	69552699	+	639.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4725.0	NM_172711	231279.0	Mm.21105	NM_172711	ENSMUSG00000029208	Guf1	4631409J12|AA407526|EF-4	GUF1 homolog, GTPase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-60940217-2	chr9	60939717	60940717	+	639.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76852.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109445829-2	chr11	109445329	109446329	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040680, intron 1 of 1)	intron (NR_040680, intron 1 of 1)	5751.0	NR_040680	100503496.0	Mm.265874	NR_040680		Gm45916	-	predicted gene, 45916	ncRNA	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr8-13550683-2	chr8	13550183	13551183	+	639.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001080781)	TTS (NM_001080781)	11778.0	NM_025601	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121364096-2	chr10	121363596	121364596	+	639.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029364)	promoter-TSS (NM_029364)	-994.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-115043834-2	chr14	115043334	115044334	+	639.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029816)	promoter-TSS (NR_029816)	-17.0	NR_029736	387135.0		NR_029736	ENSMUSG00000065403	Mir18	Mirn18|mir-18a|mmu-mir-18|mmu-mir-18a	microRNA 18	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-69431286-2	chr13	69430821	69431821	+	639.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	102543.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	8.5	49.5	18.5	0.0	0.0	0.0
Merged-chr5-115655999-2	chr5	115655499	115656499	+	639.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001080808, exon 7 of 9)	exon (NM_001080808, exon 7 of 9)	-2413.0	NR_151600	75665.0	Mm.233914	NM_001080808	ENSMUSG00000041609	Bicdl1	2210403N09Rik|BICDR-1|Ccdc64	BICD family like cargo adaptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102129195-2	chr12	102128695	102129695	+	639.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001362345, exon 1 of 17)	5' UTR (NM_001362345, exon 1 of 17)	468.0	NM_172152	238384.0	Mm.312448	NM_172152	ENSMUSG00000041771	Slc24a4	A930002M03Rik|AW492432|NCKX4	solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-4110706-3	chr13	4110232	4111232	+	639.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39899.0	NM_134066	105349.0	Mm.41337	NM_134066	ENSMUSG00000021214	Akr1c18	AW146047	aldo-keto reductase family 1, member C18	protein-coding	1.0	6.0	1.5	3.0	0.0	0.0
Merged-chr1-16621357-2	chr1	16620861	16621861	+	639.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-2023.0	NM_001271017	66799.0	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	0.0	6.5	0.0	15.5	3.5	4.0
Merged-chr6-134266946-1	chr6	134266446	134267446	+	639.5	f0_balb.idr	3' UTR (NM_007961, exon 8 of 8)	3' UTR (NM_007961, exon 8 of 8)	-129383.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0.5	3.0	0.0	3.0	3.5	0.0
Merged-chr18-46430426-2	chr18	46429924	46430924	+	639.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	35392.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74396878-2	chr17	74396378	74397378	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252478, intron 1 of 13)	B3|SINE|B2	1270.0	NM_144798	210148.0	Mm.243943	NM_144798	ENSMUSG00000024069	Slc30a6	9530029F08Rik|ZnT6	solute carrier family 30 (zinc transporter), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155566146-2	chr4	155565646	155566646	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355599, intron 1 of 10)	B3|SINE|B2	2331.0	NM_001355599	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0.0	1.5	0.0	0.0	0.0	3.5
Merged-chr5-120519369-2	chr5	120518869	120519869	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 2 of 13)	RSINE1|SINE|B4	8177.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130733330-2	chr2	130732830	130733830	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029432, intron 27 of 36)	intron (NM_029432, intron 27 of 36)	-35811.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	28.5	95.5	43.5	27.0	117.0	45.0
Merged-chr15-36967337-4	chr15	36966786	36967786	+	639.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40116.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108572898-2	chr3	108572378	108573378	+	639.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025444, intron 1 of 3)	intron (NM_025444, intron 1 of 3)	1179.0	NM_025444	99730.0	Mm.24431	NM_025444	ENSMUSG00000048100	Taf13	1810004N01Rik|2010309N11Rik|AI847295|TAFII18	TATA-box binding protein associated factor 13	protein-coding	2.0	12.0	4.5	2.0	11.5	6.5
Merged-chr6-124260757-4	chr6	124260259	124261259	+	639.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28975.0	NM_001104642	232367.0	Mm.469872	NM_001104642	ENSMUSG00000072778	Vmn2r27	EG232367	vomeronasal 2, receptor27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122528416-3	chr10	122527907	122528907	+	639.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41484.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135616924-3	chr3	135616418	135617418	+	639.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 8 of 24)	Lx7|LINE|L1	74629.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	5.0	4.5	2.5	1.0	1.0	7.0
Merged-chr3-86343673-3	chr3	86343160	86344160	+	639.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077687, intron 22 of 50)	Lx7|LINE|L1	118970.0	NM_001077688	80877.0	Mm.439825	NM_030695	ENSMUSG00000028080	Lrba	C80285|D3Ertd775e|Lab300|Lba	LPS-responsive beige-like anchor	protein-coding	2.0	0.0	0.5	0.0	4.0	5.0
Merged-chr6-108553645-2	chr6	108553145	108554145	+	639.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63902.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	1.0	3.0	0.5	0.0	3.5	0.0
Merged-chr1-54569237-3	chr1	54568689	54569689	+	639.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11505.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	5.5	6.5	2.5	5.5	6.5	3.5
Merged-chr4-132347047-2	chr4	132346591	132347591	+	639.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1341.0	NM_133878	100088.0	Mm.255045	NM_133878	ENSMUSG00000028896	Rcc1	4931417M11Rik|AI326872|Chc1	regulator of chromosome condensation 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-36203593-3	chr2	36203087	36204087	+	639.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26839.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17590633-3	chr17	17590129	17591129	+	639.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	L1MEf|LINE|L1	33860.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	3.0	10.5	10.5	1.0	10.0	19.5
Merged-chr11-107147518-3	chr11	107147018	107148018	+	639.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-9890.0	NM_001308498	105734734.0		NM_001308498		Gm11715	-	predicted gene 11715	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32266372-2	chr19	32265872	32266872	+	639.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168525, intron 2 of 9)	B4|SINE|B4	-55359.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106458747-3	chr11	106458244	106459244	+	639.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 2 of 21)	intron (NM_023913, intron 2 of 21)	29052.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-51526294-2	chr6	51525794	51526794	+	639.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361581, intron 1 of 6)	ID_B1|SINE|B4	2034.0	NM_001361580	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	1.0	0.5	0.0	0.0	2.0	2.0
Merged-chr7-30472554-2	chr7	30472057	30473057	+	639.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019459, intron 20 of 29)	B3|SINE|B2	-6966.0	NR_004443	445267.0	Mm.398140	NR_004443	ENSMUSG00000087009	Nphs1os	Nphs1as	nephrosis 1 homolog, nephrin, opposite strand	ncRNA	0.0	8.0	3.0	0.0	0.0	2.0
Merged-chr15-59862405-2	chr15	59861905	59862905	+	639.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67446.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	1.0	1.5	1.0	4.5	0.5	1.5
Merged-chr2-27720554-2	chr2	27720054	27721054	+	639.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	9971.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115160041-2	chr5	115159541	115160541	+	639.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1865.0	NM_175403	109154.0	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	2.0	6.0	4.0	2.0	4.0	7.0
Merged-chr3-84615267-4	chr3	84614772	84615772	+	639.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	21698.0	NM_207278	403175.0	Mm.83086	NM_207278	ENSMUSG00000047819	Tigd4	C130063O11Rik|Gm418	tigger transposable element derived 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-97783993-2	chr2	97783493	97784493	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	316336.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36706905-1	chr18	36706405	36707405	+	639.0	f1_balb.idr	Intergenic	Intergenic	-10980.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	5.0	0.0	1.0	2.5	0.0	0.0
Merged-chr4-59786104-4	chr4	59785561	59786561	+	639.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2206.0	NM_001013577	66209.0	Mm.51988	NM_001013577	ENSMUSG00000038544	Inip	1110054O05Rik|2610312O17Rik|AA399876|Ssbip1	INTS3 and NABP interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127515657-2	chr10	127515136	127516136	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001098789, intron 2 of 3)	intron (NM_001098789, intron 2 of 3)	697.0	NM_001098789	407790.0	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	8.5	2.0	0.0	5.0	0.0	0.0
Merged-chr13-81563782-2	chr13	81563282	81564282	+	639.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_054053, exon 17 of 90)	exon (NM_054053, exon 17 of 90)	69362.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145120217-1	chr6	145119717	145120717	+	639.0	f1_balb.idr	intron (NM_001281980, intron 1 of 18)	RLTR20B4_MM|LTR|ERVK	-1522.0	NM_008511	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	28.5	50.5	48.5	36.0	74.0	23.5
Merged-chr7-19697594-2	chr7	19697074	19698074	+	639.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009696, exon 3 of 4)	exon (NM_009696, exon 3 of 4)	824.0	NM_001305819	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22347286-2	chr16	22346786	22347786	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	52298.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-14861430-2	chr4	14860930	14861930	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-2789.0	NM_028264	72519.0	Mm.279158	NM_028264	ENSMUSG00000028221	Tmem55a	2610319K07Rik|AI315591|AV001360|Pip4p2	transmembrane protein 55A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166024338-2	chr2	166023838	166024838	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	B1F|SINE|Alu	31701.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55794792-2	chr19	55794292	55795292	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	52982.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21356644-2	chr5	21356144	21357144	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	-16029.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-141969929-2	chr1	141969429	141970429	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-1313527.0	NR_040604	75910.0	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-43828594-1	chr10	43828094	43829094	+	639.0	f0_balb.idr	intron (NR_131055, intron 1 of 2)	RMER20C_Mm|LTR|ERVK	2687.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108491436-2	chr9	108490936	108491936	+	639.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008483)	TTS (NM_008483)	760.0	NM_001168373	71472.0	Mm.289706	NM_027804	ENSMUSG00000006676	Usp19	8430421I07Rik|AI047774|Zmynd9	ubiquitin specific peptidase 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31542743-2	chr15	31542243	31543243	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12|LTR|ERVK	-11706.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-12497251-1	chr16	12496751	12497751	+	639.0	f0_balb.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-314139.0	NR_040507	75493.0	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34836115-1	chr17	34835615	34836615	+	639.0	f1_balb.idr	promoter-TSS (NM_001163770)	promoter-TSS (NM_001163770)	788.0	NM_019442	54402.0	Mm.440064	NM_019442	ENSMUSG00000061207	Stk19	G11|RP1	serine/threonine kinase 19	protein-coding	3.0	4.5	7.5	0.0	22.5	9.0
Merged-chr3-90511230-1	chr3	90510730	90511730	+	639.0	f1_balb.idr	exon (NM_011309, exon 3 of 3)	exon (NM_011309, exon 3 of 3)	-1732.0	NM_001293778	66511.0	Mm.154136	NM_023215	ENSMUSG00000001017	Chtop	2500003M10Rik|Fop|Srag	chromatin target of PRMT1	protein-coding	0.5	5.5	3.5	0.0	1.0	3.0
Merged-chr13-98813340-2	chr13	98812840	98813840	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172591, intron 1 of 25)	ID_B1|SINE|B4	2109.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125584162-2	chr7	125583662	125584662	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19267.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	6.0	7.0	5.0	2.5	8.0	2.0
Merged-chr10-118865204-2	chr10	118864739	118865739	+	639.0	f0_balb.idr|f1_balb.idr	intron (NM_001014390, intron 2 of 2)	intron (NM_001014390, intron 2 of 2)	3664.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	22.5	22.0	13.0	3.0	22.5	12.0
Merged-chr17-35814324-1	chr17	35813824	35814824	+	639.0	f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-7389.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	41.0	96.0	49.5	25.0	45.5	19.5
Merged-chr8-16673830-1	chr8	16673330	16674330	+	639.0	f1_balb.idr	intron (NM_053171, intron 5 of 69)	RMER13A|LTR|ERVK	-504992.0	NR_037214	100526464.0		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA	0.0	2.0	0.5	0.0	0.0	0.5
Merged-chr5-35510825-1	chr5	35510325	35511325	+	639.0	f1_balb.idr	intron (NM_153107, intron 7 of 10)	intron (NM_153107, intron 7 of 10)	14801.0	NM_153107	242939.0	Mm.108557	NM_153107	ENSMUSG00000036596	Cpz	AV136066	carboxypeptidase Z	protein-coding	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr10-85196428-2	chr10	85195928	85196928	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11374.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115567809-1	chr5	115567309	115568309	+	639.0	f1_c57bl6.idr	intron (NM_172719, intron 1 of 57)	intron (NM_172719, intron 1 of 57)	2546.0	NM_172719	231659.0	Mm.153014	NM_172719	ENSMUSG00000041638	Gcn1l1	4932409G22|AL022764|G431004K08Rik|GCN1L|Gcn1|mKIAA0219	GCN1 general control of amino-acid synthesis 1-like 1 (yeast)	protein-coding	2.0	0.0	4.5	0.0	7.0	0.5
Merged-chr9-106656266-2	chr9	106655722	106656722	+	639.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160353)	promoter-TSS (NM_001160353)	-113.0	NM_001160353	108068.0	Mm.410822	NM_001160353	ENSMUSG00000023192	Grm2	4930441L02Rik|Gprc1b|mGluR2|mGluR7	glutamate receptor, metabotropic 2	protein-coding	0.0	0.0	3.5	0.0	0.0	0.0
Merged-chr18-37765888-2	chr18	37765388	37766388	+	639.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_033595, exon 1 of 4)	5' UTR (NM_033595, exon 1 of 4)	308.0	NM_033595	93724.0	Mm.247203	NM_033595	ENSMUSG00000102428	Pcdhga12	Pcdh13|pc2c	protocadherin gamma subfamily A, 12	protein-coding	0.0	3.0	7.0	0.0	0.0	1.0
Merged-chr13-33073571-2	chr13	33073071	33074071	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10532.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	11.5	2.5	12.0	1.5	10.0	9.5
Merged-chr9-111043071-2	chr9	111042571	111043571	+	639.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008522)	TTS (NM_008522)	14173.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77821103-1	chr9	77820603	77821603	+	639.0	f0_balb.idr	Intergenic	ORR1C2-int|LTR|ERVL-MaLR	66568.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	7.5	4.5	0.0	1.0	0.0	4.5
Merged-chr7-98821560-2	chr7	98821060	98822060	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13552.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28277361-2	chr7	28276861	28277861	+	639.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177427)	promoter-TSS (NM_001177427)	-345.0	NM_001177427	434156.0	Mm.118535	NM_001177427	ENSMUSG00000070705	Eid2b	3010005C08Rik	EP300 interacting inhibitor of differentiation 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79176810-2	chr3	79176310	79177310	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30935.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	1.5	4.5	13.5	4.0	17.0	6.5
Merged-chr12-85398234-2	chr12	85397734	85398734	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23517.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-84604742-1	chr7	84604242	84605242	+	639.0	f0_balb.idr	intron (NM_010176, intron 1 of 13)	intron (NM_010176, intron 1 of 13)	1200.0	NM_010176	14085.0	Mm.3798	NM_010176	ENSMUSG00000030630	Fah	swst	fumarylacetoacetate hydrolase	protein-coding	0.5	8.5	2.0	4.5	7.0	11.0
Merged-chr5-74974343-2	chr5	74973843	74974843	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25149.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-91701773-2	chr13	91701273	91702273	+	639.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360775)	TTS (NM_001360775)	-39748.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-35759834-3	chr1	35759329	35760329	+	639.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-308571.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25300746-2	chr15	25300246	25301246	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	113018.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-71707942-1	chr12	71707442	71708442	+	639.0	f1_c57bl6.idr	Intergenic	Intergenic	-123126.0	NM_026102	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	1.5	0.0	3.5	0.0	0.0	2.0
Merged-chr4-59865675-2	chr4	59865175	59866175	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 2 of 8)	B1_Mur4|SINE|Alu	49381.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117900860-2	chr10	117900357	117901357	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24602.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	12.0	30.0	23.5	33.0	47.0	33.5
Merged-chr15-99423664-2	chr15	99423164	99424164	+	639.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001001884, exon 11 of 13)	exon (NM_001001884, exon 11 of 13)	30445.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr9-90238579-2	chr9	90238079	90239079	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	32190.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-61362346-2	chr3	61361846	61362846	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2161.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5732678-2	chr17	5732178	5733178	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 8 of 8)	intron (NM_146073, intron 8 of 8)	-65979.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-74531022-2	chr5	74530539	74531539	+	639.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178672, exon 1 of 5)	exon (NM_178672, exon 1 of 5)	703.0	NM_178672	212986.0	Mm.134147	NM_178672	ENSMUSG00000062110	Scfd2	E430013M20Rik|STXBP1L1	Sec1 family domain containing 2	protein-coding	1.5	0.0	1.5	2.5	4.5	6.5
Merged-chr2-154617175-2	chr2	154616675	154617675	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199304, intron 1 of 14)	Lx5b|LINE|L1	3807.0	NM_199304	228807.0	Mm.103555	NM_199304	ENSMUSG00000059842	Zfp341	Znf341	zinc finger protein 341	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28212059-2	chr17	28211559	28212559	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027185, intron 1 of 10)	intron (NM_027185, intron 1 of 10)	4281.0	NM_027185	23853.0	Mm.204731	NM_027185	ENSMUSG00000002257	Def6	2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6	differentially expressed in FDCP 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116495472-1	chr11	116494972	116495972	+	639.0	f1_balb.idr	Intergenic	Intergenic	-5126.0	NM_026364	67763.0	Mm.25125	NM_026364	ENSMUSG00000015869	Prpsap1	5730409F23Rik|PAP39	phosphoribosyl pyrophosphate synthetase-associated protein 1	protein-coding	0.0	2.0	1.0	0.0	0.0	0.0
Merged-chr2-150608095-3	chr2	150607598	150608598	+	639.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356491, intron 1 of 9)	intron (NM_001356491, intron 1 of 9)	469.0	NM_001356491	71881.0	Mm.26599	NM_027977	ENSMUSG00000033096	Apmap	2310001A20Rik|AI314817	adipocyte plasma membrane associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-18978529-2	chr6	18978029	18979029	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	112211.0	NM_001167757	75196.0	Mm.67665	NM_029202	ENSMUSG00000029517	Ankrd7	4930532L20Rik|AV278427	ankyrin repeat domain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-14501195-1	chr9	14500695	14501695	+	639.0	f0_balb.idr	promoter-TSS (NM_173433)	promoter-TSS (NM_173433)	576.0	NM_023153	66070.0	Mm.245938	NM_023153	ENSMUSG00000004096	Cwc15	0610040D20Rik|2900052N06Rik|Ed1|c11orf5|mED1	CWC15 spliceosome-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117866514-2	chr5	117866014	117867014	+	639.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008712)	promoter-TSS (NM_008712)	-325.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr8-84872845-2	chr8	84872343	84873343	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_031759, intron 2 of 3)	CpG	585.0	NM_001168244	71846.0	Mm.229128	NM_027954	ENSMUSG00000003824	Syce2	1700013H19Rik|AA407907|Cesc1	synaptonemal complex central element protein 2	protein-coding	2.0	4.0	3.0	5.5	6.0	11.5
Merged-chr1-66701658-2	chr1	66701129	66702129	+	639.0	f0_balb.idr|f0_c57.idr	exon (NM_001310642, exon 2 of 7)	exon (NM_001310642, exon 2 of 7)	798.0	NM_001310644	66646.0	Mm.240912	NM_025683	ENSMUSG00000026005	Rpe	2810429B02Rik|5730518J08Rik	ribulose-5-phosphate-3-epimerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171579742-1	chr1	171579242	171580242	+	639.0	f0_balb.idr	intron (NM_018729, intron 6 of 8)	intron (NM_018729, intron 6 of 8)	20549.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	0.0	10.0	0.0	0.0	0.0	0.0
Merged-chr2-118391400-1	chr2	118390900	118391900	+	639.0	f0_balb.idr	intron (NM_001177806, intron 1 of 37)	intron (NM_001177806, intron 1 of 37)	2288.0	NM_001177806	27103.0	Mm.217616	NM_013719	ENSMUSG00000005102	Eif2ak4	2610011M03|GCN2|MGCN2	eukaryotic translation initiation factor 2 alpha kinase 4	protein-coding	7.0	22.5	9.0	7.5	25.5	13.5
Merged-chr2-104579476-2	chr2	104578976	104579976	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-11008.0	NM_177253	228410.0	Mm.259876	NM_145529	ENSMUSG00000027176	Cstf3	4732468G05Rik|C79532|CstF-77	cleavage stimulation factor, 3' pre-RNA, subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105879503-1	chr3	105879003	105880003	+	639.0	f1_balb.idr	intron (NM_027025, intron 1 of 6)	RMER10B|LTR|ERVL	8645.0	NM_001174169	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	4.0	23.5	15.0	9.0	29.0	12.0
Merged-chr10-67503736-2	chr10	67503236	67504236	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34133.0	NM_010118	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-110972736-1	chr13	110972236	110973236	+	639.0	f0_balb.idr	Intergenic	Intergenic	-68890.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-116895975-2	chr2	116895475	116896475	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-4177.0	NR_040336	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106486735-2	chr11	106486235	106487235	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 1 of 21)	intron (NM_023913, intron 1 of 21)	1061.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-48894104-1	chr9	48893604	48894604	+	639.0	f1_balb.idr	Intergenic	Intergenic	16995.0	NM_013561	15561.0	Mm.4831	NM_013561	ENSMUSG00000032269	Htr3a	5-HT3	5-hydroxytryptamine (serotonin) receptor 3A	protein-coding	0.0	2.5	0.5	0.0	0.0	3.0
Merged-chr18-36208807-3	chr18	36208322	36209322	+	639.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11662.0	NM_001167891	100042150.0	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81381267-2	chr10	81380767	81381767	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2897.0	NM_019757	56371.0	Mm.24202	NM_019757	ENSMUSG00000020235	Fzr1	AW108046|Cdh1|FZR|FZR2|Fyr|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51825783-2	chr11	51825283	51826283	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357588, intron 9 of 12)	intron (NM_001357588, intron 9 of 12)	31698.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47743528-1	chr17	47743028	47744028	+	639.0	f0_balb.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	5597.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.0	4.0	0.0	0.0	0.0	1.5
Merged-chr13-97544789-2	chr13	97544289	97545289	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-15211.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	3.5	14.0	21.5	3.5	20.5	22.0
Merged-chr11-119353367-1	chr11	119352867	119353867	+	639.0	f1_balb.idr	intron (NM_018822, intron 1 of 7)	intron (NM_018822, intron 1 of 7)	2143.0	NM_018822	27029.0	Mm.103788	NM_018822	ENSMUSG00000005043	Sgsh	4632406A19Rik	N-sulfoglucosamine sulfohydrolase (sulfamidase)	protein-coding	0.0	3.0	0.0	0.0	0.0	3.0
Merged-chr19-42512757-1	chr19	42512257	42513257	+	639.0	f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	-6048.0	NM_177464	52013.0	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	0.0	1.0	1.0	0.0	0.0	1.0
Merged-chr7-99798442-2	chr7	99797942	99798942	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29975.0	NM_016720	50877.0	Mm.103703	NM_016720	ENSMUSG00000035239	Neu3	-	neuraminidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120288297-2	chr2	120287797	120288797	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024137, intron 1 of 19)	intron (NM_001024137, intron 1 of 19)	772.0	NM_001024137	78390.0	Mm.330507	NM_001024137	ENSMUSG00000070719	Pla2g4d	2610311B01Rik|Pla2delta|cPLA2delta	phospholipase A2, group IVD	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156783561-2	chr2	156783061	156784061	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	8097.0	NM_172118	98932.0	Mm.271770	NM_172118	ENSMUSG00000067818	Myl9	AI327049|MLC20|Mylc2c|RLC-C	myosin, light polypeptide 9, regulatory	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36375191-2	chr1	36374691	36375691	+	639.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001277076, exon 4 of 53)	exon (NM_001277076, exon 4 of 53)	2900.0	NM_001277076	100534273.0	Mm.389112	NM_001277076	ENSMUSG00000037432	Fer1l5	4930533C12Rik	fer-1-like 5 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46337764-2	chr19	46337264	46338264	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164291, intron 1 of 8)	intron (NM_001164291, intron 1 of 8)	896.0	NM_001164294	67116.0	Mm.218848	NM_024192	ENSMUSG00000036748	Cuedc2	3010002G01Rik	CUE domain containing 2	protein-coding	0.0	0.0	2.5	0.0	0.0	0.5
Merged-chr2-27359124-2	chr2	27358624	27359624	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	68484.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36684916-1	chr15	36684416	36685416	+	639.0	f0_balb.idr	Intergenic	Intergenic	-75943.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-82630703-1	chr10	82630203	82631203	+	639.0	f1_c57bl6.idr	intron (NM_001358517, intron 1 of 9)	intron (NM_001358517, intron 1 of 9)	861.0	NR_037190	624784.0	Mm.284252	NR_037190		Gm9855	-	thymine DNA glycosylase pseudogene	pseudo	13.0	29.0	13.0	8.5	20.0	10.0
Merged-chr17-57400993-2	chr17	57400493	57401493	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 2 of 22)	L1VL2|LINE|L1	42307.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.5	3.0	2.0	0.5	4.5	2.0
Merged-chr3-137623724-2	chr3	137623224	137624224	+	639.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030143)	promoter-TSS (NM_030143)	52.0	NM_030143	73284.0	Mm.250841	NM_030143	ENSMUSG00000046818	Ddit4l	1700037B15Rik|1700108M02Rik|REDD2|RTP801L|Smhs1	DNA-damage-inducible transcript 4-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12858183-2	chr17	12857683	12858683	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008552, intron 3 of 8)	B3|SINE|B2	9960.0	NM_008552	17171.0	Mm.425994	NM_008552	ENSMUSG00000068037	Mas1	Mas-1|MasR|Mgra	MAS1 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9780029-2	chr3	9779529	9780529	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 1 of 7)	intron (NM_053182, intron 1 of 7)	53650.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141864181-1	chr4	141863681	141864681	+	639.0	f1_balb.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	10739.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	2.0	1.0	8.0	0.0	0.0	5.0
Merged-chr11-69090486-2	chr11	69089986	69090986	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009497, intron 4 of 4)	intron (NM_009497, intron 4 of 4)	1958.0	NM_009497	22318.0	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|Vamp-2|sybII	vesicle-associated membrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34970034-1	chr17	34969534	34970534	+	639.0	f0_balb.idr	exon (NM_010479, exon 1 of 1)	exon (NM_010479, exon 1 of 1)	2122.0	NM_010479	193740.0	Mm.6388	NM_010479	ENSMUSG00000091971	Hspa1a	Hsp70-3|Hsp70.3|Hsp72|hsp68|hsp70A1	heat shock protein 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-107726437-2	chr5	107725937	107726937	+	639.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001267621)	promoter-TSS (NM_001267621)	-632.0	NM_001267621	14581.0	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105868331-2	chr3	105867831	105868831	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2527.0	NM_027025	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	17.0	8.5	5.0	15.0	2.0	6.5
Merged-chr2-94147793-2	chr2	94147293	94148293	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019657, intron 1 of 10)	RSINE1|SINE|B4	10116.0	NM_019657	56348.0	Mm.22505	NM_019657	ENSMUSG00000027195	Hsd17b12	2610510O05Rik|AI172963|KIK-I|Kik1	hydroxysteroid (17-beta) dehydrogenase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62261079-2	chr11	62260579	62261579	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007413, intron 1 of 1)	intron (NM_007413, intron 1 of 1)	12095.0	NM_007413	11541.0	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-57827527-3	chr14	57826987	57827987	+	638.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026401, exon 2 of 2)	3' UTR (NM_026401, exon 2 of 2)	1248.0	NM_026401	67840.0	Mm.319530	NM_026401	ENSMUSG00000021967	Mrpl57	2610025P17Rik|AV005697|Mrp63	mitochondrial ribosomal protein L57	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6209358-3	chr2	6208866	6209866	+	638.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024208, intron 1 of 4)	intron (NM_024208, intron 1 of 4)	3628.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	1.5	0.0	0.0	5.0	0.0	1.0
Merged-chr8-95887863-2	chr8	95887339	95888339	+	638.833374	f0_balb.idr|f0_c57.idr	intron (NM_010325, intron 1 of 9)	intron (NM_010325, intron 1 of 9)	526.0	NM_010325	14719.0	Mm.230169	NM_010325	ENSMUSG00000031672	Got2	AL022787|FABP-pm|Got-2|Kyat4|mAspAT	glutamatic-oxaloacetic transaminase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115552102-2	chr5	115551585	115552585	+	638.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 7 of 10)	intron (NM_011223, intron 7 of 10)	-7382.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	0.0	5.0	0.0	0.0	2.5	1.5
Merged-chr4-117886283-3	chr4	117885800	117886800	+	638.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_033617, exon 3 of 8)	exon (NM_033617, exon 3 of 8)	1029.0	NM_033617	114143.0	Mm.207052	NM_033617	ENSMUSG00000033379	Atp6v0b	2310024H13Rik|Atp6f|VMA16	ATPase, H+ transporting, lysosomal V0 subunit B	protein-coding	7.0	27.5	20.0	7.5	17.5	17.0
Merged-chr1-144199392-2	chr1	144198892	144199892	+	638.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22020.0	NM_153171	246709.0	Mm.38271	NM_153171	ENSMUSG00000051079	Rgs13	-	regulator of G-protein signaling 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80743557-2	chr10	80743057	80744057	+	638.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1282.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-11637895-3	chr17	11637396	11638396	+	638.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016694, intron 7 of 11)	intron (NM_016694, intron 7 of 11)	245293.0	NR_045808	52027.0	Mm.442257	NR_045808		D17Ertd648e	-	DNA segment, Chr 17, ERATO Doi 648, expressed	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17717383-2	chr12	17716846	17717846	+	638.75	f0_c57.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	26537.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	21.5	45.5	48.5	27.5	59.0	32.0
Merged-chr12-85499758-2	chr12	85499258	85500258	+	638.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25868.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90162864-2	chr9	90162382	90163382	+	638.75	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_001326294)	promoter-TSS (NM_001326294)	-96.0	NM_001003911	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121845381-2	chr3	121844881	121845881	+	638.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30079.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-52615922-3	chr12	52615422	52616422	+	638.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13600.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	0.5	1.5	4.0	0.5	0.0	2.5
Merged-chr3-81110922-3	chr3	81110415	81111415	+	638.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	74499.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	50.5	58.5	47.0	35.5	82.0	60.0
Merged-chr15-90618149-3	chr15	90617650	90618650	+	638.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357979, intron 4 of 18)	intron (NM_001357979, intron 4 of 18)	61238.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	0.0	7.0	4.0	13.5	0.5	8.5
Merged-chr3-52077781-3	chr3	52077294	52078294	+	638.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	27212.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-13561535-3	chr15	13561021	13562021	+	638.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-387846.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-51835247-3	chr12	51834766	51835766	+	638.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5730.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	1.5	0.0	4.5	1.0	1.0	1.0
Merged-chr1-26688133-3	chr1	26687618	26688618	+	638.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033764)	promoter-TSS (NM_001033764)	-658.0	NM_001033764	210940.0	Mm.297614	NM_001033764	ENSMUSG00000073722	4931408C20Rik	-	RIKEN cDNA 4931408C20 gene	protein-coding	0.0	0.0	4.5	0.0	0.0	4.5
Merged-chr5-140112069-3	chr5	140111580	140112580	+	638.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359025, intron 14 of 17)	L1MD|LINE|L1	62838.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-24077505-3	chr11	24076980	24077980	+	638.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159289)	promoter-TSS (NM_001159289)	-576.0	NM_016707	14025.0	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0.0	0.0	1.0	7.0	0.0	0.0
Merged-chr6-29269369-2	chr6	29268869	29269869	+	638.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEd|LINE|L1	-3119.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-36155596-2	chr12	36155092	36156092	+	638.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_025840, intron 1 of 11)	intron (NM_025840, intron 1 of 11)	1233.0	NM_025840	66912.0	Mm.288669	NM_025840	ENSMUSG00000020547	Bzw2	1110001I24Rik|Bdm2|HSPC028	basic leucine zipper and W2 domains 2	protein-coding	4.5	15.5	3.0	8.0	2.0	1.0
Merged-chr5-88791644-5	chr5	88791151	88792151	+	638.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26638.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144004388-3	chr2	144003895	144004895	+	638.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	6868.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120361358-2	chr11	120360858	120361858	+	638.549988	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172802)	promoter-TSS (NM_172802)	-176.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60788292-2	chr18	60787792	60788792	+	638.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	13696.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	3.0	2.5	8.0	4.5	5.5	4.5
Merged-chr11-113437584-1	chr11	113437084	113438084	+	638.5	f0_balb.idr	intron (NM_027216, intron 5 of 9)	intron (NM_027216, intron 5 of 9)	128231.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23452699-2	chr16	23452199	23453199	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008555, intron 15 of 15)	intron (NM_008555, intron 15 of 15)	23566.0	NM_001004151	239766.0	Mm.208751	NM_001004151	ENSMUSG00000033383	Rtp1	Gm1766|Gm604	receptor transporter protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61938451-1	chr18	61937951	61938951	+	638.5	f0_balb.idr	Intergenic	Intergenic	-14624.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	3.0	8.0	0.0	3.0	0.0	0.5
Merged-chr1-165673614-2	chr1	165673114	165674114	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	34480.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-69226706-2	chr17	69226197	69227197	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	50509.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	10.5	25.5	10.0	10.0	14.5	9.0
Merged-chr4-123930218-2	chr4	123929718	123930718	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_017475, intron 6 of 6)	intron (NM_017475, intron 6 of 6)	12785.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113779114-2	chr5	113778614	113779614	+	638.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025526)	TTS (NM_025526)	6302.0	NM_025526	66383.0	Mm.29497	NM_025526	ENSMUSG00000025825	Iscu	2310020H20Rik|AA407971|Nifu|Nifun	iron-sulfur cluster assembly enzyme	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-85916050-2	chr5	85915550	85916550	+	638.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	149533.0	NM_001345902	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	3.0	1.0	2.5	0.0	6.0	0.5
Merged-chr4-3608530-2	chr4	3608030	3609030	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054089, intron 12 of 12)	B3|SINE|B2	33651.0	NM_054089	116940.0	Mm.171323	NM_054089	ENSMUSG00000028233	Tgs1	D4Ertd800e|Ncoa6ip|Pimt	trimethylguanosine synthase 1	protein-coding	4.5	13.0	5.5	5.0	12.0	9.0
Merged-chr17-24758291-1	chr17	24757791	24758791	+	638.5	f0_balb.idr	exon (NM_001357340, exon 3 of 3)	exon (NM_001357340, exon 3 of 3)	5303.0	NM_001357340	328779.0	Mm.328848	NM_001012402	ENSMUSG00000039628	Hs3st6	3-OST-6	heparan sulfate (glucosamine) 3-O-sulfotransferase 6	protein-coding	0.0	0.0	0.0	2.5	0.0	0.0
Merged-chr15-51848620-4	chr15	51848119	51849119	+	638.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080635, intron 1 of 7)	A-rich|Low_complexity|Low_complexity	16842.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124519673-2	chr8	124519173	124520173	+	638.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1094.0	NM_029746	76332.0	Mm.240108	NM_029746	ENSMUSG00000031979	Cog2	1190002B08Rik|2700012E02Rik|C86089|Ldlc	component of oligomeric golgi complex 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3789884-3	chr4	3789464	3790464	+	638.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010747, exon 13 of 13)	3' UTR (NM_010747, exon 13 of 13)	45691.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0.0	0.0	0.0	0.0	0.0	7.5
Merged-chr5-105704133-2	chr5	105703633	105704633	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	3323.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	2.5	0.0	1.0	0.0	1.0	0.0
Merged-chr16-90213567-2	chr16	90213067	90214067	+	638.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7175.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-109431007-3	chr2	109430497	109431497	+	638.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	150259.0	NM_139303	228421.0	Mm.274086	NM_139303	ENSMUSG00000027115	Kif18a	AU024633|B130001M12Rik|gcd2	kinesin family member 18A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-40430371-3	chr6	40429874	40430874	+	638.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356375, intron 1 of 8)	intron (NM_001356375, intron 1 of 8)	5761.0	NM_001356375	243780.0	Mm.333006	NM_175528	ENSMUSG00000037172	E330009J07Rik	AI841796|Lchn|mKIAA1147	RIKEN cDNA E330009J07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29516439-2	chr6	29515939	29516939	+	638.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8487.0	NM_001029985	333088.0	Mm.332961	NM_001029985	ENSMUSG00000059022	Kcp	AW060220|CRIM-2|Crim2|Gm793|KCP-1	kielin/chordin-like protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8850702-2	chr4	8850202	8851202	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 22 of 36)	intron (NM_001355382, intron 22 of 36)	99378.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70824059-2	chr12	70823559	70824559	+	638.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1455.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12256755-2	chr17	12256255	12257255	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357722, intron 8 of 25)	intron (NM_001357722, intron 8 of 25)	61905.0	NM_011948	26407.0	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	0.0	1.0	0.0	1.0	0.0	1.0
Merged-chr4-120009947-2	chr4	120009447	120010447	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-151259.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-16447609-2	chr14	16447109	16448109	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289760, intron 5 of 9)	intron (NM_001289760, intron 5 of 9)	82403.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21221691-3	chr11	21221173	21222173	+	638.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17359.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	6.5	4.5	0.5	1.0	1.5	3.0
Merged-chr12-64897485-2	chr12	64896991	64897991	+	638.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20420.0	NM_001025605	217648.0	Mm.341586	NM_001025605	ENSMUSG00000047227	Gm527	-	predicted gene 527	protein-coding	0.0	2.5	2.5	2.5	0.0	1.5
Merged-chr9-78499292-3	chr9	78498787	78499787	+	638.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-17563.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20297945-2	chr13	20297432	20298432	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 13 of 21)	intron (NM_080288, intron 13 of 21)	-175058.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.0	0.5	0.0	3.0	1.5	0.0
Merged-chr6-38690069-2	chr6	38689569	38690569	+	638.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27000.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-14355167-2	chr17	14354667	14355667	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022315, intron 7 of 12)	intron (NM_022315, intron 7 of 12)	43775.0	NR_027986	74917.0	Mm.32228	NM_183107		4930474M22Rik	-	RIKEN cDNA 4930474M22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-86656363-2	chr14	86655863	86656863	+	638.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_019670, exon 28 of 28)	exon (NM_019670, exon 28 of 28)	410393.0	NR_040457	75155.0	Mm.399239	NR_040457	ENSMUSG00000115271	4930529K09Rik	4930507G21Rik	RIKEN cDNA 4930529K09 gene	ncRNA	6.0	6.0	4.0	10.5	2.5	5.0
Merged-chr4-118090024-2	chr4	118089524	118090524	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285520, intron 2 of 11)	intron (NM_001285520, intron 2 of 11)	44922.0	NM_001285520	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79742254-2	chr10	79741754	79742754	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172551, intron 3 of 20)	ID4_|SINE|ID	4327.0	NM_172551	216151.0	Mm.39001	NM_172551	ENSMUSG00000020329	Polrmt	1110018N15Rik|4932416K13	polymerase (RNA) mitochondrial (DNA directed)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34922749-2	chr17	34922249	34923249	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023557, intron 11 of 20)	ID_B1|SINE|B4	8283.0	NM_023557	70129.0	Mm.183126	NM_023557	ENSMUSG00000007034	Slc44a4	2210409B01Rik|NG22|mTPPT1	solute carrier family 44, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75319680-2	chr10	75319180	75320180	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331095, intron 1 of 2)	intron (NM_001331095, intron 1 of 2)	2080.0	NM_001331095	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33669260-2	chr16	33668760	33669760	+	638.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-15206.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66110612-2	chr5	66110112	66111112	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-12433.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.0	2.0	0.5	1.5	19.5	6.5
Merged-chr7-16844413-2	chr7	16843913	16844913	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178900, intron 1 of 17)	intron (NM_178900, intron 1 of 17)	1348.0	NM_178900	101540.0	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-144287862-2	chr5	144287362	144288362	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025833, intron 3 of 13)	intron (NM_025833, intron 3 of 13)	10801.0	NR_040432	100504231.0	Mm.441035	NR_040432	ENSMUSG00000086894	Gm15708	-	predicted gene 15708	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35937284-2	chr16	35936784	35937784	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013371, intron 1 of 4)	RMER15|LTR|ERVL	-1186.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67829046-2	chr5	67828546	67829546	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	18385.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95952844-1	chr3	95952344	95953344	+	638.5	f1_c57bl6.idr	Intergenic	Intergenic	23587.0	NM_023210	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	1.0	4.5	13.5	0.0	12.0	9.5
Merged-chr6-119396763-2	chr6	119396263	119397263	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_197985, intron 1 of 7)	B1F1|SINE|Alu	-8029.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr18-84691565-2	chr18	84691065	84692065	+	638.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5863.0	NM_023149	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155066832-2	chr1	155066332	155067332	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151545, intron 3 of 6)	intron (NR_151545, intron 3 of 6)	16432.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-35840434-2	chr11	35839934	35840934	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_170779, intron 21 of 22)	intron (NM_170779, intron 21 of 22)	-5906.0	NM_025936	104458.0	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100459567-2	chr15	100459067	100460067	+	638.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9444.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr3-116815568-2	chr3	116815068	116816068	+	638.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7402.0	NM_001081326	77559.0	Mm.237099	NM_001081326	ENSMUSG00000033400	Agl	1110061O17Rik|9430004C13Rik|9630046L06Rik|AI850929|C77197	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28812698-2	chr7	28812198	28813198	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177301, intron 1 of 12)	intron (NM_177301, intron 1 of 12)	1808.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-45969247-2	chr16	45968747	45969747	+	638.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152226, exon 3 of 3)	non-coding (NR_152226, exon 3 of 3)	23641.0	NR_152227	100503378.0	Mm.387133	NR_152226	ENSMUSG00000085826	Gm15638	Gm41457	predicted gene 15638	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117176027-2	chr11	117175527	117176527	+	638.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-23634.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-11919394-2	chr10	11918894	11919894	+	638.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A2|LTR|ERVK	310170.0	NM_013898	30058.0	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27991811-2	chr17	27991314	27992314	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 10 of 24)	B4A|SINE|B4	82508.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr6-51631731-2	chr6	51631231	51632231	+	638.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86438.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50584830-1	chr9	50584330	50585330	+	638.5	f0_balb.idr	Intergenic	RLTR23|LTR|ERV1	19019.0	NM_025848	66925.0	Mm.10406	NM_025848	ENSMUSG00000000171	Sdhd	3110001M13Rik|AVLL5809|C78570|PRO19626	succinate dehydrogenase complex, subunit D, integral membrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78073550-3	chr9	78073048	78074048	+	638.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	21590.0	NM_008103	14531.0	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1	protein-coding	6.0	5.0	6.0	28.0	12.5	6.0
Merged-chr2-22622553-2	chr2	22622053	22623053	+	638.333374	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008078, exon 1 of 16)	5' UTR (NM_008078, exon 1 of 16)	226.0	NM_008078	14417.0	Mm.4784	NM_008078	ENSMUSG00000026787	Gad2	6330404F12Rik|GAD(65)|GAD65|Gad-2	glutamic acid decarboxylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94962119-2	chr10	94961619	94962619	+	638.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17541.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114568078-2	chr11	114567578	114568578	+	638.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100465.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-72235401-2	chr2	72234901	72235901	+	638.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355478, intron 21 of 26)	intron (NM_001355478, intron 21 of 26)	-50236.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	5.5	0.0	0.0	5.5	0.0	2.0
Merged-chr18-47369926-3	chr18	47369411	47370411	+	638.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1041.0	NM_001311097	20358.0	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46468743-3	chr18	46468273	46469273	+	638.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2957.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-72230825-3	chr1	72230318	72231318	+	638.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13175.0	NR_155355	320933.0	Mm.440953	NR_155355		D230017M19Rik	B930094L07Rik	RIKEN cDNA D230017M19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-50984014-4	chr2	50983513	50984513	+	638.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74329.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-105394719-2	chr9	105394219	105395219	+	638.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357902)	promoter-TSS (NM_001357902)	568.0	NM_172461	208583.0	Mm.347509	NM_172461	ENSMUSG00000035032	Nek11	4932416N14Rik	NIMA (never in mitosis gene a)-related expressed kinase 11	protein-coding	14.0	10.5	6.0	3.0	14.0	4.5
Merged-chr15-82048609-3	chr15	82048111	82049111	+	638.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-1013.0	NM_011482	20826.0	Mm.299312	NM_011482	ENSMUSG00000063480	Snu13	FA-1|Fta1|Nhp2l1|Ssfa1	SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5)	protein-coding	0.0	6.0	2.0	6.0	6.0	2.5
Merged-chr9-101039100-2	chr9	101038600	101039600	+	638.3000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4216.0	NM_025835	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	13.5	6.5	9.5	0.0	3.0	5.0
Merged-chr11-83304040-2	chr11	83303540	83304540	+	638.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_027915, intron 1 of 20)	intron (NM_027915, intron 1 of 20)	1343.0	NM_001035854	71770.0	Mm.39053	NM_027915	ENSMUSG00000035152	Ap2b1	1300012O03Rik|AI788979|AP105B	adaptor-related protein complex 2, beta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96230538-2	chr10	96230038	96231038	+	638.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_110448, intron 1 of 2)	intron (NR_110448, intron 1 of 2)	4331.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36917377-2	chr1	36916803	36917803	+	638.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 1 of 40)	L2b|LINE|L2	22224.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90224366-2	chr16	90223866	90224866	+	638.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_011434, exon 3 of 5)	exon (NM_011434, exon 3 of 5)	3624.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95713255-2	chr8	95712755	95713755	+	638.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001195006, exon 15 of 15)	exon (NM_001195006, exon 15 of 15)	-2658.0	NM_001035123	66083.0	Mm.261321	NM_001035123	ENSMUSG00000031671	Setd6	0610039J04Rik|3110004G14Rik|AI413388|C76402	SET domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150426261-2	chr4	150425761	150426761	+	638.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 2 of 22)	intron (NM_001085492, intron 2 of 22)	144345.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140963164-3	chr5	140962633	140963633	+	638.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175362, intron 1 of 24)	intron (NM_175362, intron 1 of 24)	37463.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-150900886-3	chr5	150900395	150901395	+	638.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-51712.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54521501-2	chr11	54521001	54522001	+	638.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1344.0	NM_001252494	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58030111-3	chr11	58029602	58030602	+	638.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028451, intron 1 of 18)	PB1D9|SINE|Alu	21038.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	4.5	24.5	11.5	10.0	27.0	8.0
Merged-chr14-119006024-2	chr14	119005551	119006551	+	638.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081252, intron 34 of 38)	RMER12C|LTR|ERVK	68119.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	5.5	14.0	3.5	8.5	0.5	8.0
Merged-chr12-65073035-2	chr12	65072519	65073519	+	638.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013902, intron 1 of 6)	PB1D10|SINE|Alu	919.0	NM_013902	30795.0	Mm.28480	NM_013902	ENSMUSG00000020949	Fkbp3	25kDa|FKBP-3|FKBP25	FK506 binding protein 3	protein-coding	2.5	6.0	3.5	0.0	10.5	0.5
Merged-chr7-81304810-2	chr7	81304310	81305310	+	638.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 8 of 21)	intron (NM_008803, intron 8 of 21)	40424.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.5	5.5	4.0	0.5	2.5	2.0
Merged-chr10-22157598-3	chr10	22157103	22158103	+	638.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359809)	promoter-TSS (NM_001359809)	-966.0	NM_001359809	379043.0	Mm.439724	NM_198193	ENSMUSG00000053219	Raet1e	-	retinoic acid early transcript 1E	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr9-45440242-2	chr9	45439749	45440749	+	638.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081270, intron 1 of 32)	intron (NM_001081270, intron 1 of 32)	-9017.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	1.0	0.0	0.0	0.0	0.0	0.5
Merged-chr10-87927432-2	chr10	87926932	87927932	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111274, intron 4 of 4)	intron (NM_001111274, intron 4 of 4)	-39239.0	NR_000040	22172.0	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96077673-2	chr10	96077173	96078173	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137010.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-7929165-2	chr5	7928665	7929665	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-31307.0	NM_054098	117167.0	Mm.31403	NM_054098	ENSMUSG00000012428	Steap4	1110021O17Rik|AI481214|Tiarp|Tnfaip9	STEAP family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31053154-2	chr6	31052654	31053654	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9593.0	NR_029744	387222.0		NR_029744	ENSMUSG00000065610	Mir29a	Mirn29a|mir-29a|mmu-mir-29a	microRNA 29a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88627230-1	chr8	88626730	88627730	+	638.0	f1_balb.idr	exon (NM_027840, exon 4 of 4)	exon (NM_027840, exon 4 of 4)	8898.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	9.0	7.5	4.5	4.5	18.0	4.5
Merged-chr19-55052155-2	chr19	55051655	55052655	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47322.0	NM_008149	14732.0	Mm.210196	NM_008149	ENSMUSG00000024978	Gpam	GPAT|GPAT-1|GPAT1|P90	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55503490-2	chr16	55502990	55503990	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	8759.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107446847-3	chr11	107446360	107447360	+	638.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	23860.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	5.5	2.0	1.0	2.5	6.0	9.5
Merged-chr13-34216815-1	chr13	34216315	34217315	+	638.0	f0_c57.idr	intron (NM_001033167, intron 4 of 10)	MTC-int|LTR|ERVL-MaLR	53851.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	10.5	5.5	14.5	0.0	2.0	0.0
Merged-chr18-23814024-2	chr18	23813524	23814524	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	B4|SINE|B4	10054.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-14103600-2	chr9	14103100	14104100	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-172701.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47358950-2	chr6	47358450	47359450	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94782.0	NM_001355551	26965.0	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	Cul-1	cullin 1	protein-coding	0.0	2.5	2.0	0.0	0.0	0.0
Merged-chr19-42784898-2	chr19	42784398	42785398	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4920.0	NM_019424	192236.0	Mm.218381	NM_019424	ENSMUSG00000025188	Hps1	6030422N11Rik|BB405864|Gm21361|Hps|ep	HPS1, biogenesis of lysosomal organelles complex 3 subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19846956-2	chr7	19846456	19847456	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-5047.0	NM_001270489	100502736.0	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-48133249-1	chr14	48132749	48133749	+	638.0	f1_c57bl6.idr	intron (NM_033602, intron 1 of 5)	intron (NM_033602, intron 1 of 5)	12380.0	NM_033602	93834.0	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	19.0	0.0	0.0	7.0	14.5	9.0
Merged-chr6-54126429-2	chr6	54125923	54126923	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	86491.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0.5	13.5	2.5	4.0	0.0	4.0
Merged-chr3-52404861-1	chr3	52404361	52405361	+	638.0	f0_balb.idr	Intergenic	Intergenic	-112103.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-122123290-2	chr9	122122790	122123790	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357776, intron 1 of 5)	intron (NM_001357776, intron 1 of 5)	5831.0	NM_001357776	20623.0	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	1.0	0.0	1.0	1.5	0.0	0.5
Merged-chr13-37667581-2	chr13	37667081	37668081	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-158457.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-109124435-1	chr9	109123935	109124935	+	638.0	f0_balb.idr	Intergenic	Intergenic	28999.0	NM_172775	235611.0	Mm.53862	NM_172775	ENSMUSG00000053646	Plxnb1	2900002G15Rik|AU042020|mKIAA0407	plexin B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24027478-2	chr17	24026978	24027978	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-10765.0	NM_175440	213171.0	Mm.133083	NM_175440	ENSMUSG00000050762	Prss27	CAPH2|Mpn|marapsin	protease, serine 27	protein-coding	3.0	2.5	1.5	1.0	0.5	0.5
Merged-chr5-50929726-2	chr5	50929226	50930226	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	624195.0	NR_027710	19017.0	Mm.259072	NM_008904	ENSMUSG00000029167	Ppargc1a	A830037N07Rik|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-70078474-2	chr10	70077974	70078974	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-18647.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32752293-2	chr2	32751793	32752793	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013781, intron 9 of 11)	intron (NM_013781, intron 9 of 11)	-4941.0	NR_045485	30933.0	Mm.200695	NM_152800	ENSMUSG00000009563	Tor2a	Prosalusin	torsin family 2, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75621587-2	chr11	75621087	75622087	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008850, intron 10 of 11)	intron (NM_008850, intron 10 of 11)	-9433.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	5.5	2.5	2.0	5.5	2.5	2.0
Merged-chr5-21441363-2	chr5	21440863	21441863	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177869, intron 4 of 7)	intron (NM_177869, intron 4 of 7)	16460.0	NM_177869	330050.0	Mm.40655	NM_177869	ENSMUSG00000047221	Fam185a	4631428I10|AI847670	family with sequence similarity 185, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99570598-2	chr5	99570098	99571098	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	158462.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-112270227-2	chr2	112269727	112270727	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133649, intron 1 of 24)	B4A|SINE|B4	3913.0	NM_133649	107723.0	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	0.0	3.0	6.0	5.5	4.5	0.0
Merged-chr19-55896036-2	chr19	55895536	55896536	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142924, intron 1 of 11)	intron (NM_001142924, intron 1 of 11)	715.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154551025-2	chr2	154550525	154551525	+	638.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001171640)	promoter-TSS (NM_001171640)	-751.0	NM_001171640	70362.0	Mm.479620	NM_001171640	ENSMUSG00000078129	Actl10	1700007I08Rik	actin-like 10	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr15-51083314-1	chr15	51082814	51083814	+	638.0	f1_c57bl6.idr	Intergenic	Intergenic	-193273.0	NM_032000	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0.0	9.0	6.5	0.5	9.0	3.0
Merged-chr2-150740098-2	chr2	150739598	150740598	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8983.0	NM_001355068	12497.0	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-25715994-2	chr3	25715494	25716494	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357095, intron 4 of 6)	ID_B1|SINE|B4	437992.0	NM_001163387	192167.0	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93429582-1	chr16	93429082	93430082	+	638.0	f0_balb.idr	intron (NR_040494, intron 1 of 2)	intron (NR_040494, intron 1 of 2)	29290.0	NR_040494	72264.0	Mm.396204	NR_040494	ENSMUSG00000099968	1700029J03Rik	-	RIKEN cDNA 1700029J03 gene	ncRNA	7.0	3.5	0.0	0.5	0.5	2.0
Merged-chr15-82344891-1	chr15	82344391	82345391	+	638.0	f1_balb.idr	3' UTR (NM_177391, exon 2 of 2)	3' UTR (NM_177391, exon 2 of 2)	-1155.0	NM_026914	69029.0	Mm.260042	NM_026914	ENSMUSG00000022452	Smdt1	1500032L24Rik|Emre	single-pass membrane protein with aspartate rich tail 1	protein-coding	17.0	11.0	4.5	10.0	7.5	5.0
Merged-chr16-88807152-1	chr16	88806652	88807652	+	638.0	f1_c57bl6.idr	intron (NR_138570, intron 2 of 3)	L1Md_F2|LINE|L1	5068.0	NR_045150	433047.0	Mm.298027	NR_045150		Gm20741	-	keratin associated protein pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-95515553-2	chr12	95515053	95516053	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-176673.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-79371679-3	chr7	79371178	79372178	+	638.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15349.0	NM_020599	19771.0	Mm.41653	NM_020599	ENSMUSG00000039194	Rlbp1	3110056M11Rik|CRALBP	retinaldehyde binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-20942764-1	chr1	20942264	20943264	+	638.0	f1_balb.idr	Intergenic	Intergenic	-8862.0	NM_027974	71877.0	Mm.29178	NM_027974	ENSMUSG00000041809	Efhc1	1700029F22Rik|mRib72-1|myoclonin1	EF-hand domain (C-terminal) containing 1	protein-coding	8.0	0.0	1.5	0.0	1.0	0.0
Merged-chr3-96105570-3	chr3	96105063	96106063	+	638.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025614, intron 1 of 11)	intron (NM_001025614, intron 1 of 11)	1036.0	NM_001025614	229603.0	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	7.0	4.5	3.0	5.0	2.0	1.0
Merged-chr4-43668171-2	chr4	43667671	43668671	+	638.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085508)	promoter-TSS (NM_001085508)	688.0	NM_175517	242408.0	Mm.440423	NM_175517	ENSMUSG00000043633	Fam221b	4930412F15Rik	family with sequence similarity 221, member B	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr6-89295391-2	chr6	89294891	89295891	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9666.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88304738-2	chr1	88304238	88305238	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1974.0	NM_134252	171382.0	Mm.218753	NM_134252	ENSMUSG00000036251	Trpm8	CMR1|LTRPC6|LTrpC-6|TRPP8|Trp-p8	transient receptor potential cation channel, subfamily M, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-73114501-2	chr9	73113991	73114991	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198609, intron 1 of 5)	B1_Mm|SINE|Alu	1022.0	NM_198609	225215.0	Mm.379366	NM_198609	ENSMUSG00000032215	Rsl24d1	2410159K22Rik	ribosomal L24 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-38818462-1	chr19	38817962	38818962	+	638.0	f1_c57bl6.idr	intron (NM_021315, intron 1 of 20)	intron (NM_021315, intron 1 of 20)	775.0	NM_021315	57753.0	Mm.86482	NM_021315	ENSMUSG00000024999	Noc3l	AF233884|Fad24	NOC3 like DNA replication regulator	protein-coding	10.0	27.5	6.0	4.5	4.0	11.5
Merged-chr1-74282045-2	chr1	74281545	74282545	+	638.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001190444, exon 5 of 11)	exon (NM_001190444, exon 5 of 11)	2693.0	NM_001190444	227290.0	Mm.379371	NM_146110	ENSMUSG00000006299	Aamp	AU040907|Aamp-rs	angio-associated migratory protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6850088-2	chr19	6849588	6850588	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081291, intron 16 of 26)	intron (NM_001081291, intron 16 of 26)	8123.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122398562-2	chr5	122398062	122399062	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019824, intron 2 of 6)	B3|SINE|B2	6684.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	1.0	4.5	2.0	1.0	4.5	2.0
Merged-chr8-70360979-1	chr8	70360479	70361479	+	638.0	f1_c57bl6.idr	Intergenic	Intergenic	-7700.0	NM_001122829	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	4.5	6.5	8.0	5.0	5.0	0.0
Merged-chr11-116868834-2	chr11	116868378	116869378	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178620, intron 10 of 12)	ID_B1|SINE|B4	14878.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	25.5	55.5	48.0	36.5	64.5	52.5
Merged-chr2-153157435-2	chr2	153156935	153157935	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3866.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	1.0	0.0	0.0	1.0	0.0	0.0
Merged-chr10-41953809-2	chr10	41953309	41954309	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 10 of 17)	intron (NM_001034858, intron 10 of 17)	64573.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-104986397-1	chr1	104985897	104986897	+	638.0	f1_balb.idr	intron (NM_011800, intron 11 of 11)	intron (NM_011800, intron 11 of 11)	217877.0	NM_011800	23836.0	Mm.103640	NM_011800	ENSMUSG00000050840	Cdh20	Cdh7	cadherin 20	protein-coding	0.5	1.0	1.0	0.0	0.0	0.0
Merged-chr15-25391511-2	chr15	25391011	25392011	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	22253.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130341920-2	chr4	130341420	130342420	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_149717, intron 1 of 4)	intron (NR_149717, intron 1 of 4)	2856.0	NM_001355400	619605.0	Mm.297196	NM_153160	ENSMUSG00000028772	Zcchc17	2810055E05Rik|HSPC251|LDC4|pNO40|pS1D	zinc finger, CCHC domain containing 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88429101-2	chr7	88428601	88429601	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-1172.0	NM_028238	72433.0	Mm.276669	NM_028238	ENSMUSG00000030559	Rab38	2310011F14Rik|AU043391|cht	RAB38, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90592855-1	chr5	90592355	90593355	+	638.0	f0_balb.idr	intron (NM_001252661, intron 12 of 13)	intron (NM_001252661, intron 12 of 13)	31646.0	NM_001252661	622307.0	Mm.389654	NM_001252661	ENSMUSG00000070690	5830473C10Rik	Arg|Gm17754	RIKEN cDNA 5830473C10 gene	protein-coding	6.0	0.0	0.0	0.0	0.5	0.5
Merged-chr17-69221613-2	chr17	69221113	69222113	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	55593.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87452164-2	chr11	87451664	87452664	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	24573.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21304343-2	chr9	21303843	21304843	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110300, intron 5 of 10)	B1_Mur2|SINE|Alu	7990.0	NM_001110300	11768.0	Mm.22239	NM_009678	ENSMUSG00000003309	Ap1m2	D9Ertd818e|[m]1B|mu1B	adaptor protein complex AP-1, mu 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25069444-1	chr8	25068944	25069944	+	638.0	f1_balb.idr	intron (NM_031257, intron 3 of 11)	intron (NM_031257, intron 3 of 11)	-30482.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	1.5	0.0	9.0	1.0	13.5	8.0
Merged-chr6-58935277-2	chr6	58934777	58935777	+	638.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153574, exon 18 of 18)	3' UTR (NM_153574, exon 18 of 18)	-28151.0	NM_021432	58243.0	Mm.389747	NM_021432	ENSMUSG00000055430	Nap1l5	1110020M21Rik	nucleosome assembly protein 1-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135206870-1	chr3	135206370	135207370	+	638.0	f0_balb.idr	Intergenic	Intergenic	-5693.0	NM_173762	229841.0	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8241608-2	chr10	8241108	8242108	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 7 of 7)	intron (NM_177387, intron 7 of 7)	277217.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-36998732-1	chr8	36998232	36999232	+	638.0	f0_balb.idr	intron (NR_126063, intron 2 of 2)	ORR1F|LTR|ERVL-MaLR	5157.0	NM_001039220	621080.0	Mm.373292	NM_001039220	ENSMUSG00000074384	AI429214	-	expressed sequence AI429214	protein-coding	1.0	29.5	5.0	8.5	11.0	19.0
Merged-chr4-47429636-2	chr4	47429136	47430136	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR25A|LTR|ERVK	43420.0	NM_001312869	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127645829-2	chr10	127645341	127646341	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009284, intron 1 of 21)	MER44B|DNA|TcMar-Tigger	2855.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	0.0	17.0	4.5	12.5	10.5	12.5
Merged-chr6-138942484-1	chr6	138941984	138942984	+	638.0	f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-284040.0	NM_015777	50540.0	Mm.84043	NM_015777	ENSMUSG00000046717	Igbp1b	alpha4-b	immunoglobulin (CD79A) binding protein 1b	protein-coding	0.0	0.0	2.0	10.0	5.5	3.0
Merged-chr2-166777065-2	chr2	166776565	166777565	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-16702.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23537722-2	chr13	23537222	23538222	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR48A|LTR|ERV1	2304.0	NM_145073	97908.0	Mm.261657	NM_145073	ENSMUSG00000099517	Hist1h3g	H3.1-221|M32460	histone cluster 1, H3g	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55838772-2	chr1	55838272	55839272	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92469.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-125558760-2	chr1	125558260	125559260	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-1835.0	NM_001356294	74150.0	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34652030-1	chr17	34651530	34652530	+	638.0	f1_c57bl6.idr	intron (NM_017406, intron 11 of 17)	intron (NM_017406, intron 11 of 17)	4884.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	1.5	4.0	2.0	1.5	4.0	1.0
Merged-chr4-43544329-2	chr4	43543829	43544829	+	638.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011602, exon 27 of 57)	exon (NM_011602, exon 27 of 57)	18254.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	2.5	0.0	0.5	1.5	0.0	0.0
Merged-chr10-61476852-2	chr10	61476352	61477352	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153542, intron 1 of 4)	intron (NM_153542, intron 1 of 4)	1019.0	NM_153542	216011.0	Mm.136116	NM_153542	ENSMUSG00000037151	Lrrc20	BC036304	leucine rich repeat containing 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98866207-2	chr15	98865707	98866707	+	638.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033276, exon 4 of 55)	exon (NM_001033276, exon 4 of 55)	4998.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18407046-2	chr16	18406546	18407546	+	638.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001272030)	TTS (NM_001272030)	6448.0	NM_001111063	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83238925-2	chr17	83238425	83239425	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23642.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57243832-2	chr17	57243332	57244332	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030084, intron 5 of 16)	RMER12|LTR|ERVK	3638.0	NM_001308074	78308.0	Mm.28468	NM_030084	ENSMUSG00000005823	Gpr108	1810015L19Rik|AA589464|C79132|Lustr2	G protein-coupled receptor 108	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180726895-2	chr1	180726395	180727395	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133225, intron 1 of 7)	intron (NM_133225, intron 1 of 7)	852.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-58907013-1	chr2	58906513	58907513	+	638.0	f0_balb.idr	intron (NM_001362394, intron 10 of 13)	intron (NM_001362394, intron 10 of 13)	151829.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-48860602-2	chr6	48860102	48861102	+	638.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001358003, exon 1 of 3)	exon (NM_001358003, exon 1 of 3)	273.0	NM_001358003	666105.0	Mm.379315	NM_001358003		Gm7932	EG666105	predicted gene 7932	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98880443-2	chr7	98879943	98880943	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41598.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	2.0	0.0	0.5	2.0	0.0	0.0
Merged-chr18-61374791-2	chr18	61374291	61375291	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133249, intron 1 of 11)	intron (NM_133249, intron 1 of 11)	23109.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56260964-2	chr17	56260464	56261464	+	638.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010192, exon 1 of 1)	3' UTR (NM_010192, exon 1 of 1)	4171.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-66794438-1	chr4	66793938	66794938	+	638.0	f0_balb.idr	Intergenic	Intergenic	-33113.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0.0	0.0	1.0	0.0	0.5	11.5
Merged-chr7-25675682-2	chr7	25675182	25676182	+	638.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290497)	promoter-TSS (NM_001290497)	-516.0	NM_001290498	320208.0	Mm.207484	NM_177102	ENSMUSG00000061702	Tmem91	A830041P22Rik|DSPC3|SynDIG3	transmembrane protein 91	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-18453523-2	chr10	18453023	18454023	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173390, intron 1 of 6)	intron (NM_173390, intron 1 of 6)	-16458.0	NM_001163592	215819.0	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-58453585-1	chr19	58453085	58454085	+	638.0	f1_balb.idr	intron (NM_001285457, intron 2 of 9)	intron (NM_001285457, intron 2 of 9)	1813.0	NM_001285457	14585.0	Mm.88367	NM_010279	ENSMUSG00000025089	Gfra1	AU042498	glial cell line derived neurotrophic factor family receptor alpha 1	protein-coding	0.0	0.0	3.0	0.0	0.0	0.5
Merged-chr13-48260951-3	chr13	48260454	48261454	+	637.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031166)	promoter-TSS (NM_031166)	-473.0	NM_031166	15904.0	Mm.458006	NM_031166	ENSMUSG00000021379	Id4	Idb4|bHLHb27	inhibitor of DNA binding 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120665348-2	chr8	120664848	120665848	+	637.924988	f1_balb.idr|f1_c57bl6.idr	intron (NM_010926, intron 1 of 4)	intron (NM_010926, intron 1 of 4)	2764.0	NM_010926	18117.0	Mm.2136	NM_010926	ENSMUSG00000031819	Emc8	Cox4nb|Fam158b|Noc4	ER membrane protein complex subunit 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36087300-2	chr1	36086800	36087800	+	637.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	18900.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20703738-2	chr14	20703238	20704238	+	637.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029446)	promoter-TSS (NR_029446)	-639.0	NR_029446	76133.0	Mm.436043	NR_029446	ENSMUSG00000097577	6230400D17Rik	-	RIKEN cDNA 6230400D17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-121007439-3	chr4	121006953	121007953	+	637.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	9794.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	22.0	34.0	23.5	11.0	8.0	22.0
Merged-chr4-55489444-3	chr4	55488894	55489894	+	637.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43081.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	11.5	5.0	10.5	4.0	27.5	10.5
Merged-chr9-44389382-2	chr9	44388879	44389879	+	637.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_021395, exon 23 of 26)	exon (NM_021395, exon 23 of 26)	-7548.0	NM_001293631	14385.0	Mm.30087	NM_008063	ENSMUSG00000032114	Slc37a4	100043178|G6PT|G6pt1|GSD-1b|mG6PT	solute carrier family 37 (glucose-6-phosphate transporter), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39904940-2	chr1	39904440	39905440	+	637.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 2 of 29)	intron (NM_001252202, intron 2 of 29)	4027.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150363608-2	chr2	150363111	150364111	+	637.6999509999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027017)	promoter-TSS (NM_027017)	-846.0	NM_027017	69277.0	Mm.272470	NM_027017	ENSMUSG00000063364	3300002I08Rik	2900016H11Rik	RIKEN cDNA 3300002I08 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107044401-2	chr13	107043901	107044901	+	637.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21831.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	2.5	0.0	0.0	1.5	0.0	6.5
Merged-chr16-93915630-1	chr16	93915130	93916130	+	637.666687	f0_c57.idr	Intergenic	B4|SINE|B4	13937.0	NM_001165925	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	7.5	5.0	21.0	4.5	2.0	2.5
Merged-chr13-58534723-3	chr13	58534204	58535204	+	637.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76173.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-144906041-3	chr4	144905531	144906531	+	637.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	12894.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-38634530-3	chr13	38634032	38635032	+	637.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139063, intron 1 of 4)	intron (NM_139063, intron 1 of 4)	577.0	NM_139063	17828.0	Mm.261554	NM_139063	ENSMUSG00000038982	Bloc1s5	1810074A19Rik|Muted|mu	biogenesis of lysosomal organelles complex-1, subunit 5, muted	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-18664084-3	chr19	18663589	18664589	+	637.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-6691.0	NM_026120	67383.0	Mm.306602	NM_026120	ENSMUSG00000024726	Carnmt1	2410127L17Rik	carnosine N-methyltransferase 1	protein-coding	1.0	0.5	0.0	0.0	0.5	1.0
Merged-chr5-115569329-3	chr5	115568831	115569831	+	637.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172719, intron 1 of 57)	intron (NM_172719, intron 1 of 57)	4068.0	NM_172719	231659.0	Mm.153014	NM_172719	ENSMUSG00000041638	Gcn1l1	4932409G22|AL022764|G431004K08Rik|GCN1L|Gcn1|mKIAA0219	GCN1 general control of amino-acid synthesis 1-like 1 (yeast)	protein-coding	0.0	3.0	1.0	0.0	5.5	2.5
Merged-chr12-115165617-1	chr12	115165117	115166117	+	637.666687	f1_c57bl6.idr	Intergenic	Intergenic	530177.0	NR_105810	102465205.0		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	8.5	1.5	13.5	0.5	0.0	0.0
Merged-chr2-3659698-3	chr2	3659180	3660180	+	637.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53778.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120501896-2	chr4	120501386	120502386	+	637.666626	f0_balb.idr|f1_balb.idr	intron (NM_001355424, intron 7 of 14)	intron (NM_001355424, intron 7 of 14)	-30345.0	NM_177570	194219.0	Mm.29788	NM_177570	ENSMUSG00000047518	Slfnl1	4933406A14Rik	schlafen like 1	protein-coding	0.0	0.0	2.0	3.0	0.0	3.5
Merged-chr17-36207088-2	chr17	36206588	36207588	+	637.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-16937.0	NM_008208	15043.0	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64246742-3	chr1	64246244	64247244	+	637.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-125355.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105562791-2	chr5	105562291	105563291	+	637.533325	f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	L1_Mus4|LINE|L1	43320.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101923409-2	chr5	101922909	101923909	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 19 of 66)	intron (NM_172882, intron 19 of 66)	146512.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101796849-2	chr4	101796349	101797349	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146146, intron 18 of 18)	ORR1C2|LTR|ERVL-MaLR	47173.0	NM_001033790	545662.0	Mm.331735	NM_001033790	ENSMUSG00000035201	B020004J07Rik	-	RIKEN cDNA B020004J07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105960770-2	chr3	105960270	105961270	+	637.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009725)	promoter-TSS (NM_009725)	-522.0	NM_009725	11950.0	Mm.251152	NM_009725	ENSMUSG00000000563	Atp5f1	C76477	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142795344-2	chr5	142794844	142795844	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178242, intron 2 of 15)	ZP3AR|Satellite|Satellite	22043.0	NM_178242	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60784294-2	chr11	60783794	60784794	+	637.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001085440, exon 2 of 2)	3' UTR (NM_001085440, exon 2 of 2)	6769.0	NM_175491	237782.0	Mm.57726	NM_175491	ENSMUSG00000049323	Smcr8	2310076G09Rik|AI642055|D030073L15Rik	Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34189574-2	chr10	34189074	34190074	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	17977.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27412585-2	chr2	27412085	27413085	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	15023.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166619876-2	chr2	166619376	166620376	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 6 of 39)	intron (NM_177782, intron 6 of 39)	55354.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135165623-2	chr5	135165123	135166123	+	637.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2749.0	NM_009745	12054.0	Mm.405834	NM_009745	ENSMUSG00000029681	Bcl7b	-	B cell CLL/lymphoma 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81631975-2	chr10	81631475	81632475	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027480, intron 2 of 19)	B1_Mur3|SINE|Alu	3435.0	NM_027480	70615.0	Mm.304382	NM_027480	ENSMUSG00000054708	Ankrd24	4631433D01Rik|5730519E19Rik|D10Bur2e	ankyrin repeat domain 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37361158-2	chr10	37360658	37361658	+	637.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-222232.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100408880-2	chr11	100408380	100409380	+	637.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_176830, exon 8 of 8)	3' UTR (NM_176830, exon 8 of 8)	5939.0	NM_176830	66180.0	Mm.4940	NM_176830	ENSMUSG00000006931	P3h4	1110036O03Rik|AI413214|Leprel4|Sc65	prolyl 3-hydroxylase family member 4 (non-enzymatic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-18813426-2	chr9	18812926	18813926	+	637.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2866.0	NM_146605	258598.0	Mm.271453	NM_146605	ENSMUSG00000078116	Olfr828	MOR149-1	olfactory receptor 828	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102249762-2	chr11	102249262	102250262	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153544, intron 1 of 9)	intron (NM_153544, intron 1 of 9)	880.0	NM_153544	217216.0	Mm.247335	NM_153544	ENSMUSG00000034773	BC030867	-	cDNA sequence BC030867	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153086054-1	chr2	153085554	153086554	+	637.5	f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	20099.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	7.0	15.0	5.0	5.5	6.5	2.0
Merged-chr11-101556801-2	chr11	101556301	101557301	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008676, intron 4 of 23)	intron (NM_008676, intron 4 of 23)	4147.0	NM_001252223	17966.0	Mm.784	NM_008676	ENSMUSG00000017119	Nbr1	mKIAA0049	neighbor of Brca1 gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96530035-2	chr9	96529535	96530535	+	637.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51360.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101153113-2	chr4	101152613	101153613	+	637.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_183024)	TTS (NM_183024)	84075.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0.0	2.0	0.0	0.0	0.0	1.0
Merged-chr13-47245945-2	chr13	47245445	47246445	+	637.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001170643, exon 8 of 8)	3' UTR (NM_001170643, exon 8 of 8)	51942.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0.0	2.5	0.0	0.0	4.0	1.0
Merged-chr6-113329174-2	chr6	113328674	113329674	+	637.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_149720, exon 3 of 7)	non-coding (NR_149720, exon 3 of 7)	2198.0	NM_010957	18294.0	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5038019-2	chr2	5037519	5038519	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356487, intron 6 of 13)	intron (NM_001356487, intron 6 of 13)	-25228.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110593405-2	chr12	110592905	110593905	+	637.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_033340)	TTS (NR_033340)	2031.0	NR_033340	319786.0	Mm.129691	NR_033340		B930059L03Rik	-	RIKEN cDNA B930059L03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66243657-2	chr14	66243157	66244157	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	B4A|SINE|B4	-29833.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	6.5	19.0	7.5	3.5	9.5	13.0
Merged-chr19-55496775-2	chr19	55496275	55497275	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 6 of 8)	intron (NM_001360431, intron 6 of 8)	180718.0	NM_001293686	53611.0	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	1.5	0.0	4.5	3.0	6.0	1.0
Merged-chr2-167653258-2	chr2	167652758	167653758	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145538, intron 2 of 5)	intron (NM_145538, intron 2 of 5)	8286.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-3256884-2	chr15	3256384	3257384	+	637.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13883.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-90813013-2	chr15	90812514	90813514	+	637.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	85462.0	NR_033583	20738.0	Mm.431547	NR_033583	ENSMUSG00000116210	Spn-ps	Cd43-ps	sialophorin, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-40774660-2	chr6	40774160	40775160	+	637.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112834.0	NM_139296	194357.0	Mm.207087	NM_139296	ENSMUSG00000029885	Moxd2	Dbhl1	monooxygenase, DBH-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-30509146-2	chr6	30508646	30509646	+	637.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027073)	promoter-TSS (NM_027073)	627.0	NM_001347087	72649.0	Mm.45418	NM_178625	ENSMUSG00000029782	Tmem209	2700094F01Rik|AI428435	transmembrane protein 209	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135433062-2	chr3	135432562	135433562	+	637.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5170.0	NM_001356594	66105.0	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39313908-4	chr1	39313407	39314407	+	637.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008719, intron 7 of 20)	intron (NM_008719, intron 7 of 20)	-53944.0	NM_053257	114641.0	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60980986-2	chr18	60980486	60981486	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177407, intron 16 of 17)	intron (NM_177407, intron 16 of 17)	17432.0	NM_001286809	12322.0	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr1-182563424-2	chr1	182562924	182563924	+	637.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-1583.0	NM_001145806	170725.0	Mm.189201	NM_130890	ENSMUSG00000038599	Capn8	nCL-2|nCL-2'	calpain 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85590257-2	chr12	85589757	85590757	+	637.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8848.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94565418-2	chr11	94564918	94565918	+	637.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_007689, exon 1 of 4)	exon (NM_007689, exon 1 of 4)	371.0	NM_007689	12643.0	Mm.440523	NM_007689	ENSMUSG00000039084	Chad	SLRR4A	chondroadherin	protein-coding	0.0	0.0	0.0	1.5	1.0	0.0
Merged-chr11-80076191-2	chr11	80075691	80076691	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018776, intron 1 of 7)	B1_Mur4|SINE|Alu	4800.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95808861-2	chr8	95808361	95809361	+	637.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015574, exon 1 of 4)	non-coding (NR_015574, exon 1 of 4)	-1399.0	NM_001205226	234594.0	Mm.259220	NM_153164	ENSMUSG00000036550	Cnot1	6030411K04Rik|AA815922|D830048B13	CCR4-NOT transcription complex, subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54258663-2	chr14	54258165	54259165	+	637.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134076)	promoter-TSS (NM_134076)	-567.0	NM_134076	105501.0	Mm.28771	NM_134076	ENSMUSG00000040997	Abhd4	1110035H23Rik|AI429574|Abh4	abhydrolase domain containing 4	protein-coding	18.0	56.0	33.0	22.0	57.5	14.5
Merged-chr11-59558372-2	chr11	59557872	59558872	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 6 of 9)	intron (NR_153314, intron 6 of 9)	13366.0	NM_001011789	257962.0	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135794660-2	chr1	135794160	135795160	+	637.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-4761.0	NM_021467	21952.0	Mm.44379	NM_021467	ENSMUSG00000026418	Tnni1	2700018B22Rik|AI747285|ssTnI	troponin I, skeletal, slow 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-54922460-2	chr1	54921960	54922960	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	MIR|SINE|MIR	3927.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-123198083-2	chr10	123197583	123198583	+	637.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1064.0	NM_001301628	14479.0	Mm.244209	NM_027604	ENSMUSG00000020124	Usp15	4921514G19Rik|AI327321|E430033I05Rik|Gcap18	ubiquitin specific peptidase 15	protein-coding	0.5	4.0	4.5	1.5	1.5	0.0
Merged-chr11-93972435-2	chr11	93971921	93972921	+	637.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3900.0	NM_008704	18102.0	Mm.439702	NM_008704	ENSMUSG00000037601	Nme1	AL024257|NDPK-A|NM23-M1|NM23A	NME/NM23 nucleoside diphosphate kinase 1	protein-coding	6.5	23.5	11.0	0.5	26.0	22.5
Merged-chr5-62672436-1	chr5	62671936	62672936	+	637.5	f0_balb.idr	intron (NM_178407, intron 15 of 32)	intron (NM_178407, intron 15 of 32)	93741.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-101075788-2	chr12	101075288	101076288	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160214, intron 1 of 14)	B1_Mus1|SINE|Alu	-6663.0	NR_038048	319760.0	Mm.440198	NM_176997	ENSMUSG00000097121	D130020L05Rik	9430007L23Rik	RIKEN cDNA D130020L05 gene	ncRNA	2.0	3.0	12.0	5.0	7.0	6.5
Merged-chr9-92226430-2	chr9	92225930	92226930	+	637.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23764.0	NM_011636	22038.0	Mm.421956	NM_011636	ENSMUSG00000032369	Plscr1	MmTRA1a|MmTRA1b|Nor1|Tra1|Tra1a|Tra1b|Tras1|Tras2	phospholipid scramblase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61066127-2	chr10	61065627	61066627	+	637.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23204.0	NM_025273	13180.0	Mm.39473	NM_025273	ENSMUSG00000020098	Pcbd1	Dcoh|Pcbd|Pcd|Phs	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120353060-2	chr9	120352560	120353560	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144557, intron 2 of 16)	intron (NM_144557, intron 2 of 16)	48987.0	NM_144557	245049.0	Mm.100936	NM_144557	ENSMUSG00000041794	Myrip	A230081N12Rik|Slac2-c|Slac2c	myosin VIIA and Rab interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106151335-2	chr11	106150835	106151835	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 13 of 15)	intron (NM_011947, intron 13 of 15)	8592.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-31736876-1	chr11	31736376	31737376	+	637.5	f0_balb.idr	Intergenic	Intergenic	-65014.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	28.5	87.0	71.5	36.5	43.0	28.5
Merged-chr4-126063327-2	chr4	126062777	126063777	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172701, intron 1 of 9)	(A)n|Simple_repeat|Simple_repeat	4712.0	NM_172701	230751.0	Mm.38907	NM_172701	ENSMUSG00000042616	Oscp1	1810007P19Rik|5730415O04|6030436A01Rik	organic solute carrier partner 1	protein-coding	3.5	8.5	11.0	4.0	2.5	3.0
Merged-chr19-42016664-2	chr19	42016132	42017132	+	637.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	PB1D10|SINE|Alu	-19406.0	NM_020033	56642.0	Mm.143737	NM_020033	ENSMUSG00000025172	Ankrd2	Arpp|mArpp	ankyrin repeat domain 2 (stretch responsive muscle)	protein-coding	11.0	18.0	3.5	5.0	8.0	0.5
Merged-chr11-26127584-3	chr11	26127104	26128104	+	637.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027973, intron 1 of 5)	L2a|LINE|L2	-74636.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	1.0	0.0	0.0	0.0	5.0	2.5
Merged-chr3-137971177-2	chr3	137970677	137971677	+	637.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 1 of 8)	intron (NM_011932, intron 1 of 8)	10372.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	3.0	9.5	2.5	10.0	0.0	0.5
Merged-chr8-35111452-2	chr8	35110949	35111949	+	637.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-145759.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	6.0	1.0	11.0	0.5	17.0	8.0
Merged-chr2-169926721-2	chr2	169926221	169927221	+	637.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36466.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	3.0	1.5	5.0	0.5	1.5	4.0
Merged-chr11-54486278-3	chr11	54485775	54486775	+	637.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173753, intron 6 of 17)	intron (NM_173753, intron 6 of 17)	-36570.0	NM_001252494	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84918580-1	chr3	84918080	84919080	+	637.333313	f0_balb.idr	intron (NM_001177774, intron 3 of 12)	B4A|SINE|B4	-33631.0	NM_080428	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	1.5	8.5	10.0	0.0	4.5	6.0
Merged-chr1-181230934-1	chr1	181230434	181231434	+	637.333313	f0_balb.idr	Intergenic	Intergenic	-18956.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75653875-3	chr7	75653390	75654390	+	637.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	-194448.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25985255-1	chr17	25984755	25985755	+	637.333313	f0_balb.idr	intron (NM_001347334, intron 1 of 11)	CpG	541.0	NR_151779	50817.0	Mm.216072	NM_015830	ENSMUSG00000037326	Capn15	Solh	calpain 15	protein-coding	91.0	254.5	175.5	40.0	154.0	153.0
Merged-chr14-118236314-3	chr14	118235821	118236821	+	637.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131970)	promoter-TSS (NR_131970)	89.0	NR_131970	105245869.0	Mm.460408	NR_131969	ENSMUSG00000090534	LOC105245869	-	uncharacterized LOC105245869	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-142935197-3	chr2	142934705	142935705	+	637.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	32240.0	NR_131921	75053.0	Mm.72638	NR_131921	ENSMUSG00000086504	Kif16bos	4930511F01Rik	kinesin family member 16B, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67592843-2	chr18	67592343	67593343	+	637.299988	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-40122.0	NM_194355	68166.0	Mm.208723	NM_176832	ENSMUSG00000024533	Spire1	6030430B19Rik|AI415299|AU022898|AW550622|Spir-1	spire type actin nucleation factor 1	protein-coding	0.0	2.0	0.0	0.0	0.0	0.0
Merged-chr6-58594442-3	chr6	58593897	58594897	+	637.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355477, intron 1 of 15)	intron (NM_001355477, intron 1 of 15)	-2275.0	NM_011920	26357.0	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134389665-2	chr6	134389167	134390167	+	637.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_153848, intron 3 of 8)	intron (NR_153848, intron 3 of 8)	-6662.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	6.5	1.5	4.5	2.0	0.0	0.0
Merged-chr7-80030678-2	chr7	80030144	80031144	+	637.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	4416.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-45402846-3	chr5	45402377	45403377	+	637.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131933, intron 1 of 5)	LTR41B|LTR|ERVL	21523.0	NR_131933	52401.0	Mm.33854	NR_131933	ENSMUSG00000029092	D5Ertd615e	4930435H24Rik	DNA segment, Chr 5, ERATO Doi 615, expressed	ncRNA	0.0	0.0	1.0	0.0	3.0	0.0
Merged-chr7-79820416-2	chr7	79819916	79820916	+	637.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9689.0	NM_008589	17293.0	Mm.31472	NM_008589	ENSMUSG00000030543	Mesp2	bHLHc6	mesoderm posterior 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85535700-2	chr12	85535200	85536200	+	637.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61810.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44432109-2	chr13	44431608	44432608	+	637.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7619.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	1.0	1.0	5.5	0.0	6.0	13.0
Merged-chr6-99611082-2	chr6	99610582	99611582	+	637.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55689.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146221947-2	chr5	146221426	146222426	+	637.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256086)	promoter-TSS (NM_001256086)	-469.0	NM_028774	74132.0	Mm.26696	NM_028774	ENSMUSG00000029634	Rnf6	1200013I08Rik|5730419H05Rik|AA537053	ring finger protein (C3H2C3 type) 6	protein-coding	25.0	50.0	64.0	17.0	24.5	36.5
Merged-chr5-114668217-2	chr5	114667716	114668716	+	637.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9795.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0.0	2.5	5.0	1.5	2.0	3.0
Merged-chr1-152607687-3	chr1	152607165	152608165	+	637.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	17552.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22555254-2	chr16	22554754	22555754	+	637.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346673, intron 18 of 23)	B3|SINE|B2	-23070.0	NR_106170	102465887.0		NR_106170	ENSMUSG00000099071	Mir8095	Gm27566|mmu-mir-8095	microRNA 8095	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79352863-3	chr15	79352319	79353319	+	637.083313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304832, intron 1 of 2)	intron (NM_001304832, intron 1 of 2)	4417.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	0.5	0.0	0.0	0.0	1.0	2.0
Merged-chr10-93309354-1	chr10	93308854	93309854	+	637.0	f0_balb.idr	intron (NM_001322265, intron 1 of 4)	(TG)n|Simple_repeat|Simple_repeat	1805.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	1.0	0.5	0.5	1.0	7.0	0.0
Merged-chr16-69948927-1	chr16	69948427	69949427	+	637.0	f0_balb.idr	Intergenic	MLTR11B|LTR|ERVK	-85183.0	NM_173069	224318.0	Mm.212743	NM_173069	ENSMUSG00000063163	Speer2	SPEER-2	spermatogenesis associated glutamate (E)-rich protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171714101-2	chr1	171713621	171714621	+	637.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32129.0	NM_001360767	12506.0	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	11.5	15.5	19.5	27.5	32.0	20.5
Merged-chr6-40454564-3	chr6	40454081	40455081	+	637.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201370, intron 4 of 11)	intron (NM_201370, intron 4 of 11)	11718.0	NM_201370	381759.0	Mm.20593	NM_201370	ENSMUSG00000037159	Wee2	Gm1065|Wee1B	WEE1 homolog 2 (S. pombe)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-75850570-1	chr16	75850070	75851070	+	637.0	f0_balb.idr	Intergenic	Intergenic	58696.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-116951141-1	chr10	116950641	116951641	+	637.0	f0_balb.idr	promoter-TSS (NM_001003950)	promoter-TSS (NM_001003950)	579.0	NR_038026	71086.0	Mm.214134	NR_038025	ENSMUSG00000112627	4933412E12Rik	-	RIKEN cDNA 4933412E12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-124346771-2	chr14	124346271	124347271	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207667, intron 1 of 4)	Lx5|LINE|L1	-154225.0	NM_010201	14169.0	Mm.206362	NM_010201	ENSMUSG00000025551	Fgf14	FHF-4|Fhf4|Tg(tetO-MAPT*P301L)4510Kha|mFHF-4(1B)	fibroblast growth factor 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-31005183-2	chr13	31004683	31005683	+	637.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-31136.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-63969529-1	chr15	63969029	63970029	+	637.0	f0_balb.idr	intron (NM_001360038, intron 2 of 11)	URR1B|DNA|hAT-Charlie	28537.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-91233944-2	chr10	91233444	91234444	+	637.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-13325.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18247718-3	chr16	18247221	18248221	+	637.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011239, intron 1 of 5)	intron (NM_011239, intron 1 of 5)	973.0	NM_011239	19385.0	Mm.235287	NM_011239	ENSMUSG00000005732	Ranbp1	Htf9a	RAN binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-8783809-2	chr16	8783309	8784309	+	637.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45467.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-101288214-1	chr3	101287714	101288714	+	637.0	f0_balb.idr	promoter-TSS (NM_013486)	promoter-TSS (NM_013486)	-275.0	NM_013486	12481.0	Mm.22842	NM_013486	ENSMUSG00000027863	Cd2	LFA-2|Ly-37|Ly37	CD2 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81020044-2	chr15	81019544	81020544	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 8 of 13)	intron (NM_001082536, intron 8 of 13)	42279.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37962023-1	chr13	37961523	37962523	+	637.0	f1_balb.idr	Intergenic	Intergenic	32185.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	1.5	4.5	2.0	1.0	1.5	0.0
Merged-chr8-27029660-2	chr8	27029160	27030160	+	637.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153592, exon 6 of 12)	exon (NM_153592, exon 6 of 12)	5861.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67119547-2	chr15	67119074	67120074	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 3 of 8)	intron (NM_009177, intron 3 of 8)	57308.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	2.5	12.0	3.0	3.0	7.0	10.0
Merged-chr11-107325203-2	chr11	107324643	107325643	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	B1_Mus1|SINE|Alu	-135762.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	4.5	2.5	1.5	0.5	12.0	1.5
Merged-chr13-5455318-2	chr13	5454818	5455818	+	637.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERVK10C-int|LTR|ERVK	402774.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80131276-2	chr12	80130776	80131776	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033514, intron 2 of 2)	URR1B|DNA|hAT-Charlie	1568.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	28.5	63.0	42.0	19.5	76.0	61.5
Merged-chr13-79965094-2	chr13	79964594	79965594	+	637.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-918290.0	NR_153410	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-137702906-1	chr6	137702406	137703406	+	637.0	f0_balb.idr	Intergenic	Intergenic	-32176.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81334948-2	chr7	81334448	81335448	+	637.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	10286.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-79531012-2	chr14	79530512	79531512	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	15338.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3647574-2	chr8	3647073	3648073	+	637.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6D|LTR|ERVK	-8197.0	NM_001204959	57264.0	Mm.1181	NM_022984	ENSMUSG00000012705	Retn	ADSF|Fizz3|Rstn|Xcp4	resistin	protein-coding	2.5	0.0	3.0	1.5	3.0	1.5
Merged-chr3-124321300-2	chr3	124320800	124321800	+	637.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_146140, exon 1 of 1)	exon (NM_146140, exon 1 of 1)	263.0	NM_146140	229801.0	Mm.165810	NM_146140	ENSMUSG00000044528	Tram1l1	A830091N21Rik	translocation associated membrane protein 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115101323-2	chr11	115100823	115101823	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163753, intron 1 of 8)	intron (NM_001163753, intron 1 of 8)	9892.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-90811421-2	chr13	90810921	90811921	+	637.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	93934.0	NM_001145879	435376.0	Mm.292579	NM_001145879	ENSMUSG00000078958	Atp6ap1l	EG435376	ATPase, H+ transporting, lysosomal accessory protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-105609494-1	chr7	105608994	105609994	+	637.0	f1_balb.idr	intron (NM_001285873, intron 11 of 11)	intron (NM_001285873, intron 11 of 11)	-9378.0	NM_017371	15458.0	Mm.3485	NM_017371	ENSMUSG00000030895	Hpx	Hpxn|hx	hemopexin	protein-coding	0.5	7.5	3.0	2.0	0.0	7.0
Merged-chr16-91603804-2	chr16	91603304	91604304	+	637.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-6124.0	NM_030018	77975.0	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124926893-1	chr8	124926393	124927393	+	637.0	f0_balb.idr	intron (NM_053207, intron 1 of 4)	intron (NM_053207, intron 1 of 4)	22361.0	NM_053207	112405.0	Mm.140619	NM_053207	ENSMUSG00000031987	Egln1	AI503754|C1orf12|HIF-PH2|HPH-2|Hif-p4h-2|ORF13|Phd2|SM-20	egl-9 family hypoxia-inducible factor 1	protein-coding	0.0	1.0	2.5	1.5	11.5	5.0
Merged-chr16-91539717-2	chr16	91539217	91540217	+	637.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7377.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0.0	0.0	0.5	0.0	2.0	0.0
Merged-chr7-64863709-2	chr7	64863205	64864205	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183087, intron 2 of 9)	intron (NM_183087, intron 2 of 9)	9335.0	NM_023239	66647.0	Mm.19944	NM_023239	ENSMUSG00000070520	Nsmce3	5730494G16Rik|AI642138|BB044375|HCA4|Mageg1|Ndnl2|mage-g1	NSE3 homolog, SMC5-SMC6 complex component	protein-coding	3.5	0.0	0.0	0.0	0.5	0.0
Merged-chr17-62881942-2	chr17	62881442	62882442	+	637.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207654)	promoter-TSS (NM_207654)	-625.0	NM_010109	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30331605-1	chr7	30331105	30332105	+	637.0	f1_c57bl6.idr	Intergenic	Intergenic	-9230.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	0.0	2.0	0.0	0.0	3.5	3.0
Merged-chr14-31254480-2	chr14	31253980	31254980	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027088, intron 7 of 16)	intron (NM_027088, intron 7 of 16)	2991.0	NM_027088	104416.0	Mm.3779	NM_027088	ENSMUSG00000021901	Bap1	2300006C11Rik|AA989761|AW553466|mKIAA0272|uch-x4	Brca1 associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129618992-1	chr2	129618492	129619492	+	637.0	f1_c57bl6.idr	intron (NM_001355158, intron 6 of 8)	intron (NM_001355158, intron 6 of 8)	23530.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	16.0	33.0	8.5	10.5	15.5	8.0
Merged-chr17-43270310-2	chr17	43269810	43270810	+	637.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133776)	promoter-TSS (NM_133776)	-37.0	NM_133776	77596.0	Mm.159950	NM_133776	ENSMUSG00000041293	Adgrf1	5031409J19Rik|Gpr110|KPG_009	adhesion G protein-coupled receptor F1	protein-coding	0.0	0.0	0.5	0.0	0.0	1.0
Merged-chr5-143441936-3	chr5	143441452	143442452	+	637.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22541.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134922132-1	chr6	134921632	134922632	+	637.0	f1_c57bl6.idr	intron (NM_009875, intron 2 of 2)	intron (NM_009875, intron 2 of 2)	1731.0	NM_009875	12576.0	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	31.0	96.0	19.0	30.0	66.0	66.5
Merged-chr17-31583540-2	chr17	31583040	31584040	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027493, intron 2 of 11)	intron (NR_027493, intron 2 of 11)	18767.0	NM_016670	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-60898889-1	chr1	60898389	60899389	+	637.0	f0_c57.idr	Intergenic	Intergenic	-10136.0	NM_009843	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	4.0	17.0	14.5	0.0	2.5	0.0
Merged-chr15-67312824-1	chr15	67312324	67313324	+	637.0	f0_balb.idr	intron (NR_045140, intron 5 of 8)	intron (NR_045140, intron 5 of 8)	86055.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	6.5	2.5	1.5	7.5	7.0	5.5
Merged-chr17-67330429-2	chr17	67329929	67330929	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	24030.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	2.5	15.5	4.5	11.5	18.0	7.0
Merged-chr11-31942461-1	chr11	31941961	31942961	+	637.0	f0_balb.idr	Intergenic	Intergenic	-23172.0	NM_026262	67592.0	Mm.78654	NM_026262	ENSMUSG00000020299	4930524B15Rik	-	RIKEN cDNA 4930524B15 gene	protein-coding	2.5	2.5	2.0	0.5	1.5	2.5
Merged-chr8-105161377-1	chr8	105160877	105161877	+	637.0	f0_balb.idr	Intergenic	URR1B|DNA|hAT-Charlie	-9297.0	NM_001161457	12400.0	Mm.2018	NM_022309	ENSMUSG00000031885	Cbfb	AI893578|PEA2|PEBP2b|Pebp2|Pebpb2	core binding factor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103370321-1	chr11	103369821	103370821	+	637.0	f1_balb.idr	intron (NM_183034, intron 9 of 11)	intron (NM_183034, intron 9 of 11)	-6629.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0.0	3.0	0.0	1.0	14.5	1.5
Merged-chr7-45132229-2	chr7	45131729	45132729	+	637.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013520, exon 7 of 9)	exon (NM_013520, exon 7 of 9)	-3484.0	NM_009438	22121.0	Mm.180458	NM_009438	ENSMUSG00000074129	Rpl13a	1810026N22Rik|Tstap198-7|tum-antigen	ribosomal protein L13A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-26769755-2	chr10	26769255	26770255	+	637.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2757.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27029282-2	chr17	27028782	27029782	+	637.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007523)	promoter-TSS (NM_007523)	23.0	NM_027544	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98839068-2	chr7	98838568	98839568	+	637.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001285792, exon 3 of 7)	5' UTR (NM_001285792, exon 3 of 7)	223.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.0	3.5	0.0	0.5	0.0	2.5
Merged-chr19-43617112-2	chr19	43616612	43617612	+	637.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4787.0	NM_008699	18089.0	Mm.56994	NM_008699	ENSMUSG00000044220	Nkx2-3	Nkx-2.3|Nkx2.3|tinman	NK2 homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	2.5
Merged-chr6-127247749-2	chr6	127247249	127248249	+	637.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60218.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-65558051-2	chr14	65557551	65558551	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028811, intron 10 of 14)	intron (NM_028811, intron 10 of 14)	35061.0	NM_001253812	74195.0	Mm.29719	NM_028811	ENSMUSG00000022031	Elp3	2610507P14Rik|KAT9	elongator acetyltransferase complex subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101967389-1	chr5	101966889	101967889	+	637.0	f1_c57bl6.idr	intron (NM_172882, intron 5 of 66)	intron (NM_172882, intron 5 of 66)	102532.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	80.0	243.0	168.5	44.5	166.0	156.0
Merged-chr12-35888249-1	chr12	35887749	35888749	+	637.0	f1_balb.idr	Intergenic	Intergenic	-37372.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	0.0	1.0	1.0	5.0	2.5	7.5
Merged-chr5-34547172-1	chr5	34546672	34547672	+	637.0	f1_balb.idr	intron (NM_001145858, intron 1 of 12)	intron (NM_001145858, intron 1 of 12)	-2404.0	NM_001145859	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	2.5	1.5	1.5	0.0	2.0	1.0
Merged-chr4-27280240-1	chr4	27279740	27280740	+	637.0	f1_balb.idr	Intergenic	RMER17A2|LTR|ERVK	-574791.0	NR_040656	75360.0	Mm.67233	NR_040656	ENSMUSG00000086257	4930548K13Rik	-	RIKEN cDNA 4930548K13 gene	ncRNA	1.0	5.0	0.0	0.0	0.0	0.0
Merged-chr4-136134602-2	chr4	136134102	136135102	+	637.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9220.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	4.0	2.5	11.5	15.5	17.0	8.5
Merged-chr14-103003069-2	chr14	103002569	103003569	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 2 of 2)	intron (NR_045657, intron 2 of 2)	-20432.0	NM_177715	239217.0	Mm.246466	NM_177715	ENSMUSG00000098557	Kctd12	AU046135|AW538430|Pfet1|Pfetin	potassium channel tetramerisation domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38350085-2	chr6	38349585	38350585	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028864, intron 1 of 8)	intron (NM_028864, intron 1 of 8)	4518.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79826263-2	chr10	79825763	79826763	+	637.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_030218, exon 2 of 5)	exon (NM_030218, exon 2 of 5)	5242.0	NM_030218	78906.0	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101506096-1	chr13	101505596	101506596	+	637.0	f1_c57bl6.idr	Intergenic	Intergenic	-108516.0	NR_046187	78136.0	Mm.399065	NR_046187		4922502H24Rik	-	RIKEN cDNA 4922502H24 gene	ncRNA	0.0	0.0	3.5	0.0	6.0	8.0
Merged-chr6-145344619-1	chr6	145344119	145345119	+	637.0	f1_c57bl6.idr	Intergenic	Intergenic	-43006.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	3.5	9.0	12.5	2.0	1.0	15.0
Merged-chr1-180175264-2	chr1	180174764	180175764	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359269, intron 3 of 13)	intron (NM_001359269, intron 3 of 13)	18221.0	NM_001163290	67426.0	Mm.38330	NM_023341	ENSMUSG00000026489	Coq8a	4632432J16Rik|AI462003|Adck3|Cabc1|mKIAA0451	coenzyme Q8A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-89247029-2	chr7	89246529	89247529	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 4 of 14)	RMER1B|Other|Other	91758.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41031305-2	chr19	41030805	41031805	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001043228, intron 1 of 10)	intron (NM_001043228, intron 1 of 10)	2030.0	NM_009345	21673.0	Mm.25620	NM_009345	ENSMUSG00000025014	Dntt	Tdt	deoxynucleotidyltransferase, terminal	protein-coding	3.0	0.0	0.5	3.0	0.0	0.5
Merged-chr17-31122655-2	chr17	31122155	31123155	+	637.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6956.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	4.5	0.0	6.0	0.0	6.0	1.0
Merged-chr1-53830484-2	chr1	53830000	53831000	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 26 of 28)	MIR|SINE|MIR	-18924.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0.0	1.0	0.0	0.0	1.5	0.0
Merged-chr12-108934046-3	chr12	108933528	108934528	+	637.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	39756.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88263024-1	chr1	88262524	88263524	+	637.0	f0_balb.idr	TTS (NR_040291)	TTS (NR_040291)	6384.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93506208-1	chr2	93505708	93506708	+	637.0	f1_balb.idr	Intergenic	MTE2b-int|LTR|ERVL-MaLR	-43258.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	1.0	0.0	8.0	0.0	0.0	1.5
Merged-chr1-16609835-1	chr1	16609335	16610335	+	637.0	f1_balb.idr	intron (NM_001271016, intron 1 of 6)	B2_Mm1t|SINE|B2	9503.0	NM_025773	66799.0	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17205525-2	chr16	17205025	17206025	+	637.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-2610.0	NM_001033338	239731.0	Mm.86671	NM_001033338	ENSMUSG00000071636	Rimbp3	Gm1759|Gm603|RIM-BP3|mKIAA1666	RIMS binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56258301-2	chr17	56257801	56258801	+	637.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010192, exon 1 of 1)	exon (NM_010192, exon 1 of 1)	1508.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142443894-2	chr7	142443394	142444394	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009405, intron 4 of 5)	intron (NM_009405, intron 4 of 5)	1426.0	NM_009405	21953.0	Mm.39469	NM_009405	ENSMUSG00000031097	Tnni2	-	troponin I, skeletal, fast 2	protein-coding	1.5	3.5	9.0	2.0	0.5	2.5
Merged-chr4-148632261-1	chr4	148631761	148632761	+	637.0	f0_balb.idr	Intergenic	B3A|SINE|B2	-5265.0	NM_001003899	230908.0	Mm.22453	NM_145556	ENSMUSG00000041459	Tardbp	1190002A23Rik|C85084|TDP-43|Tdp43	TAR DNA binding protein	protein-coding	1.0	2.0	3.5	4.0	4.0	1.0
Merged-chr16-74872062-1	chr16	74871562	74872562	+	637.0	f1_c57bl6.idr	intron (NM_001358493, intron 1 of 28)	Lx9|LINE|L1	220708.0	NM_001358491	268902.0	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66144410-1	chr9	66143910	66144910	+	637.0	f1_balb.idr	Intergenic	Intergenic	-13816.0	NM_010019	13143.0	Mm.304472	NM_010019	ENSMUSG00000032380	Dapk2	-	death-associated protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86664817-2	chr6	86664317	86665317	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010751, intron 2 of 5)	intron (NM_010751, intron 2 of 5)	4342.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9824000-2	chr3	9823500	9824500	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195031, intron 1 of 8)	intron (NM_001195031, intron 1 of 8)	9679.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92788420-1	chr16	92787920	92788920	+	637.0	f0_balb.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	37654.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62341340-2	chr10	62340840	62341840	+	637.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146100)	promoter-TSS (NM_001146100)	733.0	NR_038038	70162.0	Mm.441212	NR_038038		Hk1os	2210417K05Rik	hexokinase 1, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87731441-2	chr6	87730941	87731941	+	637.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001159697, exon 1 of 8)	exon (NM_001159697, exon 1 of 8)	572.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	0.0	3.0	11.5	13.5	15.0	17.0
Merged-chr9-80086709-2	chr9	80086178	80087178	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311110, intron 1 of 23)	B1_Mm|SINE|Alu	19775.0	NM_146003	215351.0	Mm.28232	NM_146003	ENSMUSG00000034252	Senp6	2810017C20Rik|E130319N12Rik|Susp1|mKIAA0797	SUMO/sentrin specific peptidase 6	protein-coding	15.0	7.0	2.0	2.0	7.5	1.5
Merged-chr15-43099678-2	chr15	43099178	43100178	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357956, intron 2 of 5)	intron (NM_001357956, intron 2 of 5)	71140.0	NM_001357957	239405.0	Mm.193274	NM_172815	ENSMUSG00000051920	Rspo2	2610028F08Rik|AA673245|D430027K22|ftls	R-spondin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-87043444-4	chr9	87042963	87043963	+	636.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359962, intron 8 of 14)	intron (NM_001359962, intron 8 of 14)	21434.0	NM_001359962	266690.0	Mm.30166	NM_024195	ENSMUSG00000032872	Cyb5r4	2810034J18Rik|B5+B5R|C79736|Cb5cb5r|Ncb5or|b5/b5r|b5b5r	cytochrome b5 reductase 4	protein-coding	6.5	4.0	3.0	5.0	0.0	7.0
Merged-chr18-62464673-3	chr18	62464183	62465183	+	636.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008313, exon 7 of 7)	3' UTR (NM_008313, exon 7 of 7)	79169.0	NM_001361091	107035.0	Mm.21295	NM_134136	ENSMUSG00000042211	Fbxo38	6030410I24Rik|AU044865|AW214031|Moka|SP329	F-box protein 38	protein-coding	1.5	3.0	2.0	0.0	1.5	5.0
Merged-chr9-110742394-3	chr9	110741904	110742904	+	636.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001083936, exon 1 of 14)	5' UTR (NM_001083936, exon 1 of 14)	206.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12805896-3	chr19	12805377	12806377	+	636.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134152, intron 2 of 8)	L2|LINE|L2	7298.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	20.5	47.5	47.5	58.5	126.0	85.5
Merged-chr8-8688494-2	chr8	8687994	8688994	+	636.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_176849, intron 1 of 3)	intron (NM_176849, intron 1 of 3)	1668.0	NR_106114	102465762.0		NR_106114	ENSMUSG00000098917	Mir7654	Gm27748|mmu-mir-7654	microRNA 7654	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111820923-2	chr12	111820423	111821423	+	636.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026752, intron 1 of 6)	intron (NM_026752, intron 1 of 6)	6753.0	NM_026752	68520.0	Mm.390497	NM_026752	ENSMUSG00000021286	Zfyve21	1110013H04Rik|AW558780|C85416	zinc finger, FYVE domain containing 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60759227-2	chr13	60758744	60759744	+	636.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 25 of 26)	intron (NM_134062, intron 25 of 26)	27120.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	9.5	1.0	5.0	2.5	25.5	6.0
Merged-chr17-29382617-2	chr17	29382105	29383105	+	636.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21691.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	17.0	14.0	19.0	0.0	8.5	9.0
Merged-chr6-67041063-2	chr6	67040563	67041563	+	636.833313	f1_balb.idr|f1_c57bl6.idr	intron (NR_040278, intron 1 of 6)	intron (NR_040278, intron 1 of 6)	-3656.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72397025-2	chr6	72396525	72397525	+	636.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6358.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73441182-3	chr15	73440655	73441655	+	636.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17964.0	NM_001358045	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80750711-2	chr10	80750211	80751211	+	636.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-4492.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6998315-2	chr19	6997815	6998815	+	636.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153795)	TTS (NM_153795)	2184.0	NR_027351	107328.0	Mm.391161	NM_153597	ENSMUSG00000047656	Trpt1	AU079016|AW045591|Tpt1|Tpt1h	tRNA phosphotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-17698031-2	chr13	17697531	17698531	+	636.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025479, exon 2 of 2)	3' UTR (NM_025479, exon 2 of 2)	2618.0	NM_025479	66308.0	Mm.291109	NM_025479	ENSMUSG00000012429	Mplkip	2810021B07Rik|C330007M08Rik|Ttdn1	M-phase specific PLK1 intereacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143151278-2	chr7	143150778	143151778	+	636.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008434, intron 2 of 15)	intron (NM_008434, intron 2 of 15)	44024.0	NM_008434	16535.0	Mm.439769	NM_008434	ENSMUSG00000009545	Kcnq1	AW559127|KVLQT1|Kcna9	potassium voltage-gated channel, subfamily Q, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34820373-2	chr8	34819827	34820827	+	636.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_176933)	TTS (NM_176933)	12717.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr15-62049278-2	chr15	62048778	62049778	+	636.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	L1ME1|LINE|L1	10021.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30994079-2	chr13	30993579	30994579	+	636.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20032.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8613113-2	chr11	8612613	8613613	+	636.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	51422.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14218347-2	chr2	14217847	14218847	+	636.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081310, intron 3 of 3)	B3A|SINE|B2	-11067.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-105001114-1	chr12	105000614	105001614	+	636.666687	f0_balb.idr	intron (NM_172500, intron 1 of 16)	intron (NM_172500, intron 1 of 16)	-2437.0	NM_001042699	212073.0	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	KASH3|nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94690558-3	chr10	94690058	94691058	+	636.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029852, intron 1 of 15)	RMER10A|LTR|ERVL	1768.0	NM_029852	77048.0	Mm.296971	NM_029852	ENSMUSG00000020024	Cep83	2600001G24Rik|4921537D05Rik|5730513H21Rik|Ccdc41	centrosomal protein 83	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65038908-3	chr9	65038429	65039429	+	636.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028906, intron 3 of 20)	intron (NM_028906, intron 3 of 20)	6471.0	NM_028906	74388.0	Mm.202749	NM_028906	ENSMUSG00000032393	Dpp8	2310004I03Rik|4932434F09Rik|AI666706|DPP VIII	dipeptidylpeptidase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84146293-3	chr10	84145809	84146809	+	636.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-45612.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-118553244-3	chr1	118552743	118553743	+	636.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359330, intron 30 of 39)	intron (NM_001359330, intron 30 of 39)	-74702.0	NM_023755	81879.0	Mm.24621	NM_023755	ENSMUSG00000026380	Tfcp2l1	1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1	transcription factor CP2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113220889-3	chr5	113220349	113221349	+	636.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6060.0	NM_001033428	333048.0	Mm.332586	NM_001033428	ENSMUSG00000066964	Tmem211	Gm854	transmembrane protein 211	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-58559051-2	chr2	58558551	58559551	+	636.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110204, intron 1 of 12)	intron (NM_001110204, intron 1 of 12)	2359.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158181599-2	chr2	158181099	158182099	+	636.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001131021)	TTS (NM_001131021)	-10409.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88524266-3	chr17	88523764	88524764	+	636.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	-5860.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	21.5	14.5	3.0	3.0	8.5	8.5
Merged-chr8-75106636-2	chr8	75106176	75107176	+	636.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-2833.0	NM_001302540	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	0.0	6.5	7.0	5.5	8.5	3.5
Merged-chr14-108158351-2	chr14	108157851	108158851	+	636.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	755888.0	NM_199065	76965.0	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-141424560-2	chr6	141424060	141425060	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018779, intron 2 of 15)	intron (NM_018779, intron 2 of 15)	84007.0	NR_033555	100093700.0	Mm.483778	NR_033555	ENSMUSG00000107456	Gm10400	-	predicted gene 10400	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-169442892-2	chr1	169442392	169443392	+	636.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	88572.0	NM_023284	66977.0	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36162309-2	chr1	36161809	36162809	+	636.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_198899, exon 30 of 41)	exon (NM_198899, exon 30 of 41)	-17996.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140510357-2	chr5	140509857	140510857	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021528, intron 1 of 1)	HAL1|LINE|L1	4748.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13980987-2	chr10	13980487	13981487	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	B3|SINE|B2	14608.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.0	0.5	0.0	2.0	5.5	2.0
Merged-chr1-131112137-2	chr1	131111637	131112637	+	636.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14294.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81693414-2	chr15	81692914	81693914	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164320, intron 3 of 5)	intron (NM_001164320, intron 3 of 5)	3873.0	NM_001164320	214685.0	Mm.393287	NM_001164320	ENSMUSG00000063765	Chadl	AY100452|D930017K21Rik	chondroadherin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184535163-2	chr1	184534663	184535663	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040472, intron 2 of 5)	intron (NR_040472, intron 2 of 5)	22528.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77766363-2	chr18	77765863	77766863	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357531, intron 4 of 10)	PB1D10|SINE|Alu	1436.0	NM_146089	225745.0	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122892511-2	chr5	122892011	122893011	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003953, intron 12 of 22)	intron (NM_001003953, intron 12 of 22)	7839.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	4.0	1.5	0.0	3.5	6.5	0.0
Merged-chr5-122500206-2	chr5	122499706	122500706	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110140, intron 3 of 19)	intron (NM_001110140, intron 3 of 19)	2019.0	NM_001110140	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21492494-2	chr9	21491994	21492994	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039520, intron 14 of 20)	intron (NM_001039520, intron 14 of 20)	4070.0	NR_029585	387194.0		NR_029585	ENSMUSG00000065547	Mir199a-1	Mirn199|Mirn199a-1|mir-199a-1	microRNA 199a-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-64205502-2	chr11	64205002	64206002	+	636.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	126018.0	NR_033780	66456.0	Mm.124828	NR_033780	ENSMUSG00000087497	2810001G20Rik	AW045514	RIKEN cDNA 2810001G20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5715997-2	chr19	5715497	5716497	+	636.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_053252, exon 12 of 19)	exon (NM_053252, exon 12 of 19)	10320.0	NM_001114595	114601.0	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	2.5	6.0	8.0	1.5	1.0	6.5
Merged-chr2-4480359-2	chr2	4479859	4480859	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 3 of 23)	RMER1B|Other|Other	79383.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71267353-2	chr17	71266853	71267853	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357338, intron 4 of 7)	intron (NM_001357338, intron 4 of 7)	43658.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	4.0	1.5	0.0	0.0	9.5	6.5
Merged-chr7-125558091-2	chr7	125557602	125558602	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008700, intron 1 of 10)	intron (NM_001008700, intron 1 of 10)	5820.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	0.5	13.0	13.5	1.0	5.0	3.0
Merged-chr1-131066640-2	chr1	131066140	131067140	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	B3|SINE|B2	31203.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42897784-3	chr10	42897283	42898283	+	636.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359265, intron 1 of 6)	intron (NM_001359265, intron 1 of 6)	37271.0	NM_001359264	268297.0	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	Scm polycomb group protein like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98712242-1	chr7	98711742	98712742	+	636.5	f0_balb.idr	intron (NM_001355114, intron 4 of 5)	intron (NM_001355114, intron 4 of 5)	8995.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83269611-2	chr17	83269111	83270111	+	636.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	54328.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33945983-2	chr16	33945483	33946483	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 12 of 14)	intron (NM_001145884, intron 12 of 14)	21055.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-84678222-2	chr7	84677722	84678722	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360577, intron 1 of 7)	intron (NM_001360577, intron 1 of 7)	1174.0	NM_022985	65098.0	Mm.209349	NM_022985	ENSMUSG00000030629	Zfand6	3110005P07Rik|Awp1|Za20d3	zinc finger, AN1-type domain 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80317866-2	chr10	80317366	80318366	+	636.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025521)	TTS (NM_025521)	2682.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90209758-2	chr7	90209258	90210258	+	636.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_146194)	TTS (NM_146194)	55674.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152038558-2	chr4	152038058	152039058	+	636.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028727)	promoter-TSS (NM_028727)	-68.0	NM_031867	110326.0	Mm.29232	NM_031867	ENSMUSG00000028950	Tas1r1	Gpr70|T1r1|TR1	taste receptor, type 1, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-60800053-2	chr14	60799553	60800553	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027436, intron 5 of 18)	B1F2|SINE|Alu	15487.0	NR_040642	70478.0	Mm.274650	NM_027436	ENSMUSG00000021993	Mipep	5730405E07Rik|MIP	mitochondrial intermediate peptidase	protein-coding	1.0	0.5	1.0	1.0	0.5	1.0
Merged-chr10-21634753-2	chr10	21634253	21635253	+	636.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	41608.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126458515-2	chr7	126458015	126459015	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007504, intron 5 of 22)	intron (NM_007504, intron 5 of 22)	4558.0	NM_007504	11937.0	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14333799-2	chr2	14333299	14334299	+	636.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54599.0	NM_001012305	277468.0	Mm.44662	NM_001012305	ENSMUSG00000036949	Slc39a12	AW046938|Gm731	solute carrier family 39 (zinc transporter), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75609360-2	chr7	75608860	75609860	+	636.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029332, exon 7 of 37)	exon (NM_029332, exon 7 of 37)	153826.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	2.5	0.0	1.5	13.5	14.0	4.5
Merged-chr8-59053783-2	chr8	59053283	59054283	+	636.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	142028.0	NM_173411	234290.0	Mm.39244	NM_173411	ENSMUSG00000049946	BC030500	-	cDNA sequence BC030500	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr16-43168689-2	chr16	43168189	43169189	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285805, intron 2 of 10)	intron (NM_001285805, intron 2 of 10)	-78595.0	NM_181058	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34063857-2	chr17	34063358	34064358	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009926, intron 59 of 63)	intron (NM_009926, intron 59 of 63)	24720.0	NM_001317722	12815.0	Mm.20230	NM_009926	ENSMUSG00000024330	Col11a2	-	collagen, type XI, alpha 2	protein-coding	1.5	0.0	1.5	2.0	0.0	0.5
Merged-chr3-95955849-2	chr3	95955349	95956349	+	636.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26592.0	NM_023210	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138135541-2	chr1	138135041	138136041	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	L1MA4A|LINE|L1	39585.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61896563-2	chr9	61896063	61897063	+	636.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17947.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17450368-2	chr17	17449868	17450868	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025681, intron 4 of 5)	intron (NM_025681, intron 4 of 5)	47682.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43556792-2	chr13	43556292	43557292	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081059, intron 1 of 8)	ID_B1|SINE|B4	3399.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	0.0	2.5	0.0	0.5	1.0	5.0
Merged-chr5-135911461-2	chr5	135910961	135911961	+	636.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_018871, exon 2 of 2)	exon (NM_018871, exon 2 of 2)	23180.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	0.0	1.5	0.0	0.0	1.5	0.0
Merged-chr4-117123888-2	chr4	117123391	117124391	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_024078, intron 2 of 6)	intron (NR_024078, intron 2 of 6)	1834.0	NR_024078	78611.0	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	4.5	9.5	3.0	0.0	11.0	8.0
Merged-chr13-59840639-2	chr13	59840139	59841139	+	636.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-17492.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0.0	0.0	3.0	0.0	1.0	0.5
Merged-chr6-83045533-2	chr6	83045033	83046033	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013586, intron 4 of 13)	B1_Mus1|SINE|Alu	-4178.0	NR_106007	102465630.0		NR_106007	ENSMUSG00000099035	Mir7040	Gm27489|mmu-mir-7040	microRNA 7040	ncRNA	13.0	10.5	22.0	19.0	22.5	15.0
Merged-chr3-87000809-2	chr3	87000309	87001309	+	636.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1469.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	1.0	1.5	0.0	1.5	0.0	0.0
Merged-chr2-45098268-2	chr2	45097768	45098768	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	12009.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117347823-2	chr8	117347323	117348323	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-1347.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70817998-1	chr14	70817498	70818498	+	636.5	f0_balb.idr	Intergenic	Intergenic	-34935.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	0.0	9.0	2.5	2.0	0.0	5.0
Merged-chr2-30044232-2	chr2	30043732	30044732	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008498, intron 1 of 8)	B2_Mm2|SINE|B2	4647.0	NM_001008498	71820.0	Mm.88053	NM_001008498	ENSMUSG00000039715	Wdr34	3200002I06Rik	WD repeat domain 34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-121392609-2	chr7	121392109	121393109	+	636.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081327, exon 1 of 2)	5' UTR (NM_001081327, exon 1 of 2)	313.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80709749-2	chr10	80709249	80710249	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007460, intron 26 of 30)	intron (NM_007460, intron 26 of 30)	7056.0	NM_027829	71564.0	Mm.35802	NM_027829	ENSMUSG00000055862	Izumo4	9030607L17Rik|AI550407	IZUMO family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143506878-2	chr7	143506378	143507378	+	636.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4354.0	NM_009434	22113.0	Mm.334344	NM_009434	ENSMUSG00000010760	Phlda2	Ipl|Tssc3	pleckstrin homology like domain, family A, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6970363-2	chr19	6969863	6970863	+	636.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008874)	promoter-TSS (NM_008874)	-549.0	NM_001290349	18797.0	Mm.273204	NM_008874	ENSMUSG00000024960	Plcb3	mKIAA4098	phospholipase C, beta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34683156-2	chr5	34682656	34683656	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080743, intron 4 of 5)	L1VL4|LINE|L1	22777.0	NM_019497	14772.0	Mm.117076	NM_019497	ENSMUSG00000052783	Grk4	A830025H08Rik|GRK|Gprk2l|Gprk4	G protein-coupled receptor kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-64842676-1	chr14	64842176	64843176	+	636.5	f0_balb.idr	intron (NM_177338, intron 6 of 9)	intron (NM_177338, intron 6 of 9)	107181.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89454954-2	chr3	89454454	89455454	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310640, intron 1 of 3)	intron (NM_001310640, intron 1 of 3)	413.0	NM_001310640	68603.0	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69905538-2	chr11	69905038	69906038	+	636.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001291119, exon 6 of 28)	exon (NM_001291119, exon 6 of 28)	3722.0	NM_001013414	216860.0	Mm.268347	NM_001013414	ENSMUSG00000047284	Neurl4	-	neuralized E3 ubiquitin protein ligase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59734431-2	chr9	59733931	59734931	+	636.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001172071, exon 3 of 3)	3' UTR (NM_001172071, exon 3 of 3)	16218.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-179502762-2	chr1	179502262	179503262	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027188, intron 1 of 11)	intron (NM_027188, intron 1 of 11)	15279.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89442703-2	chr3	89442203	89443203	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146131, intron 2 of 10)	intron (NM_146131, intron 2 of 10)	5999.0	NM_146131	229534.0	Mm.65906	NM_146131	ENSMUSG00000042613	Pbxip1	4732463H20Rik	pre B cell leukemia transcription factor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67424800-2	chr5	67424300	67425300	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164806, intron 1 of 4)	intron (NM_001164806, intron 1 of 4)	2999.0	NM_001164806	666938.0	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	0.0	0.0	8.0	0.0	1.5	0.0
Merged-chr17-33553093-2	chr17	33552593	33553593	+	636.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172619, exon 25 of 25)	exon (NM_172619, exon 25 of 25)	-2614.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	0.0	0.5	4.5	0.0	0.0	0.0
Merged-chr6-115887025-4	chr6	115886466	115887466	+	636.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_031177, exon 9 of 29)	exon (NM_031177, exon 9 of 29)	33438.0	NM_031177	81896.0	Mm.333335	NM_031177	ENSMUSG00000030323	Ift122	C86139|Wdr10|sopb	intraflagellar transport 122	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34145971-4	chr8	34145566	34146566	+	636.375	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026609, intron 1 of 3)	intron (NM_026609, intron 1 of 3)	673.0	NM_026609	68192.0	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	44.5	151.5	133.0	88.0	142.0	126.0
Merged-chr2-70742775-4	chr2	70742262	70743262	+	636.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172664, intron 10 of 19)	L2b|LINE|L2	81253.0	NM_027352	70231.0	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118424162-2	chr11	118423662	118424662	+	636.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4295.0	NM_001204129	56745.0	Mm.23845	NM_019959	ENSMUSG00000017446	C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-109643686-2	chr7	109643186	109644186	+	636.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26539.0	NM_029811	76954.0	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-5897919-3	chr5	5897429	5898429	+	636.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-148612.0	NM_027399	70358.0	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-90930351-3	chr8	90929851	90930851	+	636.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	-1898.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	4.0	6.0	10.0	0.0	5.5	13.5
Merged-chr10-94482257-2	chr10	94481757	94482757	+	636.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	ORR1E|LTR|ERVL-MaLR	-32600.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11496393-2	chr16	11495893	11496893	+	636.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	90745.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35252790-2	chr18	35252290	35253290	+	636.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009818, intron 17 of 17)	intron (NM_009818, intron 17 of 17)	-37766.0	NM_178005	107065.0	Mm.39900	NM_178005	ENSMUSG00000071862	Lrrtm2	AI851755|BB129880|C630011A14Rik|mKIAA0416	leucine rich repeat transmembrane neuronal 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134060263-2	chr1	134059763	134060763	+	636.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18892.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-4102203-2	chr5	4101703	4102703	+	636.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_020010, intron 2 of 9)	Lx8|LINE|L1	2494.0	NM_020010	13121.0	Mm.140158	NM_020010	ENSMUSG00000001467	Cyp51	AI426508|CYPLI|Cyp51a1|Ldm|P450-14DM|P450LI	cytochrome P450, family 51	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-36252719-3	chr2	36252223	36253223	+	636.233337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008969)	TTS (NM_008969)	22297.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121477462-4	chr9	121476896	121477896	+	636.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18298.0	NM_001284508	12424.0	Mm.2619	NM_031161	ENSMUSG00000032532	Cck	-	cholecystokinin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-86807859-4	chr8	86807275	86808275	+	636.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61769.0	NM_009172	20437.0	Mm.324553	NM_009172	ENSMUSG00000036840	Siah1a	AA982064|AI853500|Sinh1a	siah E3 ubiquitin protein ligase 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98770612-3	chr7	98770130	98771130	+	636.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21B|LTR|ERV1	-64482.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	14.5	28.5	35.5	6.0	13.5	15.5
Merged-chr14-64178914-3	chr14	64178454	64179454	+	636.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253715, intron 4 of 4)	ID_B1|SINE|B4	74631.0	NM_028525	73382.0	Mm.481055	NM_028525	ENSMUSG00000021966	Prss52	1700049K14Rik|Tesp3	protease, serine 52	protein-coding	0.0	1.5	0.0	2.0	4.5	3.0
Merged-chr14-55685375-2	chr14	55684875	55685875	+	636.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3558.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136684558-2	chr1	136684058	136685058	+	636.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_045325, intron 1 of 2)	MER2|DNA|TcMar-Tigger	929.0	NR_045325	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64299759-2	chr1	64299259	64300259	+	636.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-178370.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85899550-3	chr1	85899095	85900095	+	636.133362	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022417, intron 1 of 5)	intron (NM_022417, intron 1 of 5)	5085.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167702315-3	chr2	167701811	167702811	+	636.133301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11134.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45737102-3	chr19	45736606	45737606	+	636.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010205, exon 5 of 5)	exon (NM_010205, exon 5 of 5)	5778.0	NM_001166361	14179.0	Mm.4012	NM_010205	ENSMUSG00000025219	Fgf8	Aigf|Fgf-8	fibroblast growth factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59644857-2	chr15	59644357	59645357	+	636.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3797.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70775035-4	chr14	70774494	70775494	+	636.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010071, intron 1 of 4)	intron (NM_010071, intron 1 of 4)	613.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88631171-2	chr8	88630623	88631623	+	636.049988	f1_balb.idr|f1_c57bl6.idr	intron (NM_027840, intron 2 of 3)	intron (NM_027840, intron 2 of 3)	5005.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	4.0	10.5	6.0	0.0	0.0	6.0
Merged-chr10-68134276-1	chr10	68133776	68134776	+	636.0	f0_balb.idr	intron (NM_023598, intron 5 of 9)	intron (NM_023598, intron 5 of 9)	144450.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	9.5	40.5	21.0	21.5	22.0	13.5
Merged-chr17-56520388-2	chr17	56519888	56520888	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TGGA)n|Simple_repeat|Simple_repeat	-7905.0	NM_011483	20834.0	Mm.76862	NM_011483	ENSMUSG00000044526	Znrf4	1700094M01Rik|Ssrzf1|spzn	zinc and ring finger 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-113302897-2	chr9	113302397	113303397	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	284255.0	NR_040760	102688.0	Mm.394901	NR_040760	ENSMUSG00000109890	AU023762	-	expressed sequence AU023762	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-136953963-2	chr2	136953463	136954463	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_149746, intron 4 of 8)	intron (NR_149746, intron 4 of 8)	54612.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-23013277-2	chr2	23012777	23013777	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	intron (NM_001077190, intron 1 of 10)	26964.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110627967-2	chr7	110627467	110628467	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009627, intron 1 of 3)	intron (NM_009627, intron 1 of 3)	310.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62894303-1	chr9	62893803	62894803	+	636.0	f0_balb.idr	intron (NM_019663, intron 9 of 13)	intron (NM_019663, intron 9 of 13)	-32279.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107285144-1	chr9	107284644	107285644	+	636.0	f1_c57bl6.idr	intron (NM_001316691, intron 1 of 7)	intron (NM_001316691, intron 1 of 7)	4252.0	NM_001316691	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	3.0	2.5	0.0	1.0	0.0	2.5
Merged-chr7-99144857-1	chr7	99144357	99145357	+	636.0	f1_balb.idr	Intergenic	Intergenic	-3713.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	3.0	13.5	9.0	3.0	0.0	7.5
Merged-chr11-118354361-2	chr11	118353861	118354861	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011594, intron 1 of 4)	intron (NM_011594, intron 1 of 4)	1050.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84957054-1	chr8	84956554	84957554	+	636.0	f1_balb.idr	TTS (NM_001357326)	TTS (NM_001357326)	8957.0	NM_027187	69724.0	Mm.182470	NM_027187	ENSMUSG00000052926	Rnaseh2a	2400006P09Rik|RNASEHI|RNHIA|RNHL	ribonuclease H2, large subunit	protein-coding	0.0	0.0	1.5	3.5	4.0	0.5
Merged-chr18-82686376-2	chr18	82685876	82686876	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177832, intron 1 of 29)	intron (NM_177832, intron 1 of 29)	6358.0	NM_177832	329002.0	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-86929954-1	chr2	86929454	86930454	+	636.0	f1_balb.idr	Intergenic	Lx2|LINE|L1	-6424.0	NM_146845	258842.0	Mm.389311	NM_146845	ENSMUSG00000075169	Olfr1098	MOR206-1	olfactory receptor 1098	protein-coding	3.5	0.5	4.0	0.0	0.5	6.0
Merged-chr12-59586595-2	chr12	59586095	59587095	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-367112.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	3.5	0.5	4.5	2.5	2.0	1.0
Merged-chr11-77447410-2	chr11	77446910	77447910	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 13 of 14)	intron (NM_177710, intron 13 of 14)	-16503.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-74646569-2	chr13	74646069	74647069	+	636.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_030711, exon 2 of 19)	exon (NM_030711, exon 2 of 19)	6716.0	NM_030711	80898.0	Mm.83526	NM_030711	ENSMUSG00000021583	Erap1	A-LAP|ARTS-1|Arts1|ERAAP|PILSA|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132358446-2	chr2	132357946	132358946	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII|LTR|ERVK	27001.0	NM_144944	246313.0	Mm.283777	NM_144944	ENSMUSG00000050558	Prokr2	B830005M06Rik|EG-VEGRF2|Gpcr73l1|Gpr73l1|PKR2	prokineticin receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32281952-2	chr4	32281452	32282452	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-135483.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17664773-1	chr12	17664273	17665273	+	636.0	f1_balb.idr	Intergenic	Intergenic	-26036.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	4.0	0.5	0.0	2.0	0.0	0.0
Merged-chr12-17547509-2	chr12	17547009	17548009	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013614, intron 3 of 11)	intron (NM_013614, intron 3 of 11)	2636.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr11-114876766-2	chr11	114876266	114877266	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-13275.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111792287-1	chr13	111791787	111792787	+	636.0	f0_balb.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	16706.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-40405459-2	chr1	40404959	40405959	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24111.0	NM_001294171	17082.0	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-48549221-2	chr13	48548721	48549721	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10949.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44399961-2	chr9	44399461	44400461	+	636.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106053)	promoter-TSS (NR_106053)	-462.0	NR_106053	102465658.0		NR_106053	ENSMUSG00000099309	Mir7085	Gm27423|mmu-mir-7085	microRNA 7085	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45613565-2	chr13	45613065	45614065	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 5 of 6)	intron (NM_001199304, intron 5 of 6)	106121.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125639782-1	chr7	125639282	125640282	+	636.0	f1_balb.idr	Intergenic	Intergenic	36353.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	2.0	4.0	2.0	0.0	0.0	0.5
Merged-chr13-49364883-1	chr13	49364383	49365383	+	636.0	f0_balb.idr	intron (NM_001039179, intron 1 of 6)	intron (NM_001039179, intron 1 of 6)	23334.0	NM_001039180	76895.0	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	BICD cargo adaptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67103275-2	chr15	67102775	67103775	+	636.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009177, exon 9 of 9)	3' UTR (NM_009177, exon 9 of 9)	73607.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167817081-2	chr2	167816581	167817581	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115246.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-50652883-2	chr10	50652383	50653383	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 11 of 41)	ORR1C1|LTR|ERVL-MaLR	60214.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33379980-1	chr16	33379480	33380480	+	636.0	f1_balb.idr	promoter-TSS (NM_011749)	promoter-TSS (NM_011749)	756.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73723476-2	chr15	73722976	73723976	+	636.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001166390, exon 1 of 5)	exon (NM_001166390, exon 1 of 5)	331.0	NM_001166389	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154685104-2	chr2	154684604	154685604	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	28078.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60223622-2	chr11	60223122	60224122	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1041.0	NM_001358315	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-47986725-2	chr8	47986225	47987225	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133791, intron 1 of 22)	intron (NM_133791, intron 1 of 22)	3826.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28410217-2	chr7	28409717	28410717	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175021, intron 3 of 12)	intron (NM_175021, intron 3 of 12)	17221.0	NM_019458	54624.0	Mm.7916	NM_019458	ENSMUSG00000003437	Paf1	5730511K23Rik|AA675045	Paf1, RNA polymerase II complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50678101-2	chr17	50677601	50678601	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 5 of 5)	intron (NM_013880, intron 5 of 5)	-20580.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	0.0	3.0	0.0	1.0	1.5	1.5
Merged-chr12-76528539-2	chr12	76528039	76529039	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B1|LTR|ERVL	4673.0	NR_039597	100628604.0		NR_039597	ENSMUSG00000092738	Mir5135	mir-5135|mmu-mir-5135|mu-mir-5135	microRNA 5135	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101423376-2	chr7	101422876	101423876	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008548, intron 1 of 30)	intron (NM_001008548, intron 1 of 30)	1685.0	NR_152192	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr5-149276969-2	chr5	149276469	149277469	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308462, intron 2 of 3)	B4A|SINE|B4	11965.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10358944-2	chr16	10358444	10359444	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291001, intron 6 of 6)	intron (NM_001291001, intron 6 of 6)	-27659.0	NR_126064	381033.0	Mm.263108	NR_126064	ENSMUSG00000116270	Gm1600	Gm1776	predicted gene 1600	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5160261-2	chr6	5159761	5160761	+	636.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_181595, exon 16 of 16)	3' UTR (NM_181595, exon 16 of 16)	33685.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-24964272-1	chr19	24963772	24964772	+	636.0	f1_balb.idr	Intergenic	Lx4A|LINE|L1	-2656.0	NM_146097	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	1.5	22.5	11.5	4.0	4.0	2.0
Merged-chr1-189793566-2	chr1	189793066	189794066	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008976, intron 2 of 18)	ID_B1|SINE|B4	65298.0	NM_008976	19250.0	Mm.4498	NM_008976	ENSMUSG00000026604	Ptpn14	C130080N23Rik|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding	0.0	2.5	5.5	0.0	0.0	2.0
Merged-chr3-8736747-2	chr3	8736247	8737247	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69709.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0.5	2.0	10.5	0.0	0.0	1.5
Merged-chr1-51657370-1	chr1	51656870	51657870	+	636.0	f0_c57.idr	Intergenic	Lx8|LINE|L1	-60652.0	NR_151621	100045066.0	Mm.404734	NR_151621		Gm17767	-	predicted gene, 17767	ncRNA	0.0	1.0	3.5	0.0	3.0	3.0
Merged-chr7-43564033-2	chr7	43563533	43564533	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008549, intron 1 of 4)	intron (NM_001008549, intron 1 of 4)	1663.0	NM_001008549	210104.0	Mm.333821	NM_001008549	ENSMUSG00000056592	Zfp658	-	zinc finger protein 658	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67100360-2	chr10	67099860	67100860	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3372.0	NM_178606	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-43215879-1	chr3	43215379	43216379	+	636.0	f0_balb.idr	Intergenic	Lx|LINE|L1	1473261.0	NM_027271	73852.0	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14986775-1	chr8	14986275	14987275	+	636.0	f0_balb.idr	intron (NM_001037736, intron 25 of 27)	intron (NM_001037736, intron 25 of 27)	-24250.0	NM_029116	74901.0	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	0.0	0.5	2.0	0.5	4.5	0.5
Merged-chr2-23036922-2	chr2	23036422	23037422	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	B3A|SINE|B2	3319.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34659505-2	chr17	34659005	34660005	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11030.0	NM_031176	81877.0	Mm.290527	NM_031176	ENSMUSG00000033327	Tnxb	Tn-mhc|Tnx	tenascin XB	protein-coding	4.0	9.5	1.5	0.0	0.0	1.0
Merged-chr1-79753407-2	chr1	79752907	79753907	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027057, intron 1 of 4)	intron (NM_027057, intron 1 of 4)	8362.0	NM_001111279	69368.0	Mm.293273	NM_027057	ENSMUSG00000073643	Wdfy1	1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435	WD repeat and FYVE domain containing 1	protein-coding	1.5	0.0	1.0	0.0	0.0	0.0
Merged-chr7-15945105-2	chr7	15944605	15945605	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133831, intron 2 of 12)	B1_Mus1|SINE|Alu	1003.0	NM_133831	68077.0	Mm.277634	NM_133831	ENSMUSG00000041560	Nop53	5330430H08Rik|9430097C02Rik|AU041936|AW536441|Gltscr2|PICT-1|R74911	NOP53 ribosome biogenesis factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124476688-2	chr6	124476188	124477188	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11904.0	NM_153508	232370.0	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79864756-2	chr10	79864256	79865256	+	636.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008956)	TTS (NM_008956)	2169.0	NR_105875	102465549.0		NR_105875	ENSMUSG00000098562	Mir6910	Gm27763|mmu-mir-6910	microRNA 6910	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96983010-2	chr11	96982510	96983510	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5322.0	NM_001080964	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88084338-2	chr4	88083838	88084838	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10292.0	NM_001081184	230393.0	Mm.287210	NM_001081184	ENSMUSG00000038368	Focad	-	focadhesin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110836245-1	chr5	110835745	110836745	+	636.0	f1_balb.idr	intron (NR_153348, intron 2 of 5)	intron (NR_153348, intron 2 of 5)	3532.0	NM_001359835	100900.0	Mm.200231	NM_153571	ENSMUSG00000043510	Hscb	AI325508|AW049829|Hsc20	HscB iron-sulfur cluster co-chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8322119-1	chr17	8321619	8322619	+	636.0	f1_c57bl6.idr	intron (NM_001357890, intron 6 of 8)	intron (NM_001357890, intron 6 of 8)	-11001.0	NR_073374	75060.0	Mm.426530	NR_073374	ENSMUSG00000087478	4930506C21Rik	-	RIKEN cDNA 4930506C21 gene	ncRNA	1.0	1.0	3.5	1.0	20.5	5.5
Merged-chr14-92339192-2	chr14	92338692	92339692	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	1551477.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31173601-2	chr2	31173101	31174101	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178760, intron 5 of 17)	B2_Mm2|SINE|B2	21285.0	NM_178760	277463.0	Mm.236074	NM_178760	ENSMUSG00000000194	Gpr107	9930033D15Rik|AI790205|C530034M11|mKIAA1624	G protein-coupled receptor 107	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4308043-3	chr16	4307543	4308543	+	636.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009624, intron 5 of 10)	intron (NM_009624, intron 5 of 10)	78814.0	NR_003628	436332.0	Mm.478141	NM_001013830	ENSMUSG00000089645	Gm5766	EG436332	ribosomal protein L7a pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85299550-1	chr1	85299050	85300050	+	636.0	f1_balb.idr	Intergenic	B2_Mm2|SINE|B2	-28984.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97990099-2	chr11	97989599	97990599	+	636.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152188, exon 6 of 6)	non-coding (NR_152188, exon 6 of 6)	-3653.0	NM_001163608	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100860162-2	chr13	100859662	100860662	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-26735.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-66221359-2	chr4	66220859	66221859	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207109, intron 2 of 22)	intron (NM_207109, intron 2 of 22)	183124.0	NM_019514	56079.0	Mm.445312	NM_019514	ENSMUSG00000028373	Astn2	1d8|Astnl|bM452J22.1	astrotactin 2	protein-coding	0.0	0.0	0.0	3.5	1.0	3.5
Merged-chr13-34707351-2	chr13	34706851	34707851	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32291.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	1.0	0.0	0.0	1.0	0.0	0.0
Merged-chr4-40173986-2	chr4	40173486	40174486	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007386, intron 4 of 20)	RMER5|LTR|ERV1	30721.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11468934-2	chr16	11468434	11469434	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	63286.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171344552-2	chr1	171344133	171345133	+	636.0	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360825)	promoter-TSS (NM_001360825)	-321.0	NM_001360825	18637.0	Mm.10756	NM_011070	ENSMUSG00000006412	Pfdn2	ESTM27|W48336	prefoldin 2	protein-coding	7.5	0.5	1.5	6.0	2.0	0.5
Merged-chr3-81141032-1	chr3	81140532	81141532	+	636.0	f0_balb.idr	intron (NM_001357746, intron 2 of 6)	URR1A|DNA|hAT-Charlie	104616.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	1.0	0.0	3.5	0.0	1.0	0.0
Merged-chr7-16264676-1	chr7	16264176	16265176	+	636.0	f0_balb.idr	Intergenic	B3A|SINE|B2	-5136.0	NM_007577	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	10.5	12.0	8.0	1.5	3.0	13.5
Merged-chr13-58188661-4	chr13	58188177	58189177	+	635.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026842, intron 6 of 10)	MTE-int|LTR|ERVL-MaLR	26976.0	NM_152234	56085.0	Mm.182053	NM_026842	ENSMUSG00000005312	Ubqln1	1110046H03Rik|1810030E05Rik|AU019746|C77538|D13Ertd372e|Da41|Dsk2|Plic-1|Plic1|Xdrp1	ubiquilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-117034890-4	chr13	117034404	117035404	+	635.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9388.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12931665-2	chr13	12931165	12932165	+	635.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY3-int|LTR|ERVK	73665.0	NM_031191	18811.0	Mm.88796	NM_031191	ENSMUSG00000079092	Prl2c2	Ghd2|MRP-1|PLF-1|Plf|Plf1	prolactin family 2, subfamily c, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148529048-2	chr2	148528548	148529548	+	635.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85513.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	6.5	1.0	19.5	3.0	9.5	5.0
Merged-chr16-93081755-4	chr16	93081246	93082246	+	635.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-255672.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	2.5	1.0	0.0	3.0	1.5
Merged-chr10-24163431-4	chr10	24162934	24163934	+	635.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016797, intron 2 of 9)	intron (NM_016797, intron 2 of 9)	14117.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99040002-2	chr15	99039502	99040502	+	635.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	10111.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32608383-3	chr11	32607897	32608897	+	635.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 12 of 18)	intron (NM_009288, intron 12 of 18)	-34158.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	3.5	0.0	0.0	1.0	2.5	0.0
Merged-chr19-6912188-2	chr19	6911710	6912710	+	635.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_007953, intron 6 of 6)	intron (NM_007953, intron 6 of 6)	2076.0	NR_105956	102466213.0		NR_105956	ENSMUSG00000098413	Mir6990	Gm27726|mmu-mir-6990	microRNA 6990	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121762813-2	chr9	121762313	121763313	+	635.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001166644, exon 2 of 6)	exon (NM_001166644, exon 2 of 6)	2780.0	NM_001166644	270210.0	Mm.473702	NM_001166644	ENSMUSG00000013419	Zfp651	4732420M22Rik|BC030045|R74626	zinc finger protein 651	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3629714-2	chr4	3629213	3630213	+	635.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11C_MM|LTR|ERVK	-26793.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	3.0	3.0	8.5	4.5	1.5	1.0
Merged-chr11-59162023-2	chr11	59161543	59162543	+	635.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270791, intron 1 of 1)	intron (NM_001270791, intron 1 of 1)	1702.0	NM_001270791	216792.0	Mm.266175	NM_173785	ENSMUSG00000049287	Iba57	4930543L23Rik|A230051G13Rik|C1orf69	IBA57 homolog, iron-sulfur cluster assembly	protein-coding	1.5	5.5	5.5	1.5	1.0	0.0
Merged-chr9-118683316-2	chr9	118682816	118683816	+	635.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 13 of 27)	intron (NM_133721, intron 13 of 27)	-28376.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	9.0	6.5	3.5	1.5	1.5	0.0
Merged-chr6-72023383-2	chr6	72022883	72023883	+	635.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_046180, intron 1 of 2)	B4|SINE|B4	19145.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135898283-2	chr5	135897783	135898783	+	635.6999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10364.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119969412-3	chr4	119968902	119969902	+	635.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	154724.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	0.0	0.0	0.0	2.0	0.0	0.0
Merged-chr17-65845568-3	chr17	65845067	65846067	+	635.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	39356.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	5.5	0.0	1.5	6.5	0.0	3.5
Merged-chr2-75735975-2	chr2	75735457	75736457	+	635.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31294.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	2.5	1.0	8.5	4.0	10.0	3.0
Merged-chr19-4301375-2	chr19	4300875	4301875	+	635.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	4847.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148597172-3	chr2	148596675	148597675	+	635.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-75440.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-148772371-2	chr1	148771869	148772869	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	1150070.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71679188-2	chr8	71678688	71679688	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190830, intron 4 of 23)	intron (NM_001190830, intron 4 of 23)	2805.0	NM_010589	16453.0	Mm.249645	NM_010589	ENSMUSG00000031805	Jak3	fae|wil	Janus kinase 3	protein-coding	1.5	1.0	0.0	1.5	0.0	0.0
Merged-chr2-44928731-2	chr2	44928231	44929231	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67109.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45626323-2	chr17	45625823	45626823	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24221.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89197222-2	chr15	89196722	89197722	+	635.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027081)	promoter-TSS (NM_027081)	-748.0	NM_027081	69440.0	Mm.482128	NM_027081	ENSMUSG00000015377	Dennd6b	1700027J05Rik|AI414881|Fam116b	DENN/MADD domain containing 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-39700927-2	chr14	39700427	39701427	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	45264.0	NR_045936	73591.0	Mm.65499	NR_045936	ENSMUSG00000101261	1700109I08Rik	-	RIKEN cDNA 1700109I08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83665935-1	chr11	83665435	83666435	+	635.5	f0_c57.idr	Intergenic	Intergenic	3351.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	3.5	0.0	0.0	0.0	0.0	1.0
Merged-chr6-16885923-2	chr6	16885434	16886434	+	635.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 1 of 6)	intron (NM_031198, intron 1 of 6)	12507.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	2.0	17.5	7.0	2.0	9.0	10.0
Merged-chr2-104025423-2	chr2	104024923	104025923	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175161, intron 3 of 4)	intron (NM_175161, intron 3 of 4)	-2376.0	NM_020593	57443.0	Mm.143768	NM_020593	ENSMUSG00000027180	Fbxo3	1200002G09Rik|1700026K02Rik|AI046358|Fba	F-box protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-17967549-2	chr5	17967049	17968049	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 1 of 7)	Lx8|LINE|L1	4979.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-53888048-2	chr1	53887468	53888468	+	635.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 15 of 28)	intron (NM_001001883, intron 15 of 28)	38544.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	1.5	0.0	0.0	4.5	3.5	9.5
Merged-chr16-91396184-2	chr16	91395684	91396684	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 7 of 7)	intron (NM_001347258, intron 7 of 7)	-10051.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37496161-2	chr19	37495653	37496653	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	30899.0	NR_131009	78640.0	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	1.5	6.5	7.0	12.0	10.5	5.0
Merged-chr1-171271554-2	chr1	171271053	171272053	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020579, intron 2 of 7)	intron (NM_020579, intron 2 of 7)	1225.0	NM_020579	57370.0	Mm.274011	NM_020579	ENSMUSG00000052423	B4galt3	9530061M23Rik|AA104562|AW125175|ESTM26|ESTM6|R74981	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	protein-coding	10.0	29.0	15.5	15.5	22.0	21.0
Merged-chr18-65678098-2	chr18	65677598	65678598	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361052, intron 6 of 8)	intron (NM_001361052, intron 6 of 8)	-20170.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	22.0	8.5	18.5	23.0	41.0	15.5
Merged-chr15-12430927-2	chr15	12430427	12431427	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081064, intron 5 of 23)	intron (NM_001081064, intron 5 of 23)	109431.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-98140947-3	chr6	98140444	98141444	+	635.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	149161.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115127881-2	chr11	115127381	115128381	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001169153, intron 1 of 6)	intron (NM_001169153, intron 1 of 6)	6111.0	NM_001347648	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125350410-2	chr5	125349910	125350910	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-9316.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29502234-2	chr19	29501734	29502734	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19753.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68248143-2	chr10	68247643	68248643	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	30583.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	4.5	35.0	9.0	8.5	51.0	25.5
Merged-chr5-99226748-3	chr5	99226251	99227251	+	635.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 10 of 13)	intron (NM_181318, intron 10 of 13)	26176.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	9.0	7.5	5.5	3.5	10.0	2.0
Merged-chr19-24272363-2	chr19	24271863	24272863	+	635.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008044, exon 3 of 5)	exon (NM_008044, exon 3 of 5)	8223.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	0.0	16.5	3.5	5.5	8.5	14.5
Merged-chr13-107721191-2	chr13	107720691	107721691	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33794.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140743572-2	chr5	140743072	140744072	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 3 of 7)	ID_B1|SINE|B4	19445.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45415263-2	chr7	45414763	45415763	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198190, intron 2 of 2)	intron (NM_198190, intron 2 of 2)	1568.0	NM_198190	78405.0	Mm.20344	NM_198190	ENSMUSG00000074121	Ntf5	2900040K06Rik|AI462899|NT-4|NT-5|NT4|NT4/5|Ntf-5|Ntf4	neurotrophin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77627648-2	chr15	77627148	77628148	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15638.0	NM_001143686	328563.0	Mm.17957	NM_001143686	ENSMUSG00000091694	Apol11b	A330102K04Rik	apolipoprotein L 11b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57334077-2	chr17	57333577	57334577	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-24609.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100353644-2	chr11	100353128	100354128	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359052, intron 5 of 12)	intron (NM_001359052, intron 5 of 12)	2500.0	NM_001359052	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr11-116222794-2	chr11	116222294	116223294	+	635.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_025276, exon 22 of 22)	exon (NM_025276, exon 22 of 22)	6792.0	NR_004853	69681.0	Mm.33677	NR_004853	ENSMUSG00000092300	Cdk3-ps	2310050O10Rik|Cdk3	cyclin-dependent kinase 3, pseudogene	pseudo	0.0	0.5	7.0	0.0	0.0	2.0
Merged-chr9-87172344-2	chr9	87171878	87172878	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101482, intron 2 of 3)	intron (NM_001101482, intron 2 of 3)	23150.0	NM_001359955	244958.0	Mm.335337	NM_001101482	ENSMUSG00000042761	Mrap2	BB633055	melanocortin 2 receptor accessory protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88555270-2	chr3	88554770	88555770	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033526, intron 1 of 10)	intron (NM_033526, intron 1 of 10)	1554.0	NM_033526	94232.0	Mm.303059	NM_033526	ENSMUSG00000008604	Ubqln4	A1Up|A1u|AI663987|CIP75|UBIN	ubiquilin 4	protein-coding	0.0	0.0	4.0	0.0	0.0	4.0
Merged-chr14-104657022-2	chr14	104656522	104657522	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_015593, intron 1 of 5)	intron (NR_015593, intron 1 of 5)	17875.0	NR_015593	320249.0	Mm.320725	NR_015593	ENSMUSG00000115432	D130009I18Rik	-	RIKEN cDNA D130009I18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118513347-2	chr11	118512847	118513847	+	635.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001285436, exon 4 of 14)	exon (NM_001285436, exon 4 of 14)	36515.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122568707-2	chr6	122568207	122569207	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14898.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94389805-2	chr8	94389305	94390305	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357205, intron 3 of 7)	intron (NM_001357205, intron 3 of 7)	3376.0	NM_022331	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-56174718-2	chr13	56174218	56175218	+	635.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001168615, exon 3 of 3)	3' UTR (NM_001168615, exon 3 of 3)	4167.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	3.5	9.5	10.0	7.0	11.0	14.5
Merged-chr7-143614818-2	chr7	143614302	143615302	+	635.5	f0_balb.idr|f1_balb.idr	intron (NM_175649, intron 5 of 7)	MTC|LTR|ERVL-MaLR	13043.0	NM_175649	244237.0	Mm.247498	NM_175649	ENSMUSG00000045362	Tnfrsf26	Tnfrh3|Tnfrsf24	tumor necrosis factor receptor superfamily, member 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105614740-2	chr8	105614240	105615240	+	635.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035492)	promoter-TSS (NR_035492)	-726.0	NR_035492	100316712.0		NR_035492	ENSMUSG00000089432	Mir1966	mir-1966|mmu-mir-1966	microRNA 1966	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-86300429-2	chr10	86299929	86300929	+	635.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011595)	promoter-TSS (NM_011595)	17.0	NM_011595	21859.0	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.0	0.0	0.5	0.0	5.5	0.0
Merged-chr6-116011316-2	chr6	116010816	116011816	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-16311.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8766194-2	chr3	8765694	8766694	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99156.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117002789-2	chr4	117002289	117003289	+	635.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_175244, exon 18 of 21)	exon (NM_175244, exon 18 of 21)	7441.0	NM_175244	76608.0	Mm.251420	NM_175244	ENSMUSG00000046861	Hectd3	1700064K09Rik|AI467540|AW743312	HECT domain E3 ubiquitin protein ligase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91487565-2	chr16	91487065	91488065	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010508, intron 1 of 10)	intron (NM_010508, intron 1 of 10)	2350.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135960518-1	chr5	135960018	135961018	+	635.5	f1_balb.idr	3' UTR (NM_001160366, exon 11 of 11)	3' UTR (NM_001160366, exon 11 of 11)	13958.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	2.0	0.5	5.0	0.0	2.5	6.5
Merged-chr11-102293983-2	chr11	102293483	102294483	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001098836, intron 4 of 12)	intron (NM_001098836, intron 4 of 12)	2646.0	NM_001098836	217218.0	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67223233-2	chr7	67222733	67223733	+	635.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131044)	promoter-TSS (NR_131044)	617.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69644702-2	chr11	69644202	69645202	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011814, intron 7 of 16)	ORR1A2|LTR|ERVL-MaLR	-9183.0	NR_035420	100316749.0		NR_035420	ENSMUSG00000080573	Mir467f	Mirn467f|mmu-mir-467f	microRNA 467f	ncRNA	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr2-150782037-2	chr2	150781537	150782537	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4759.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155418918-2	chr4	155418418	155419418	+	635.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001166029, exon 4 of 5)	exon (NM_001166029, exon 4 of 5)	2786.0	NR_102287	641454.0	Mm.150322	NR_102283	ENSMUSG00000084803	5830444B04Rik	-	RIKEN cDNA 5830444B04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-12736945-2	chr10	12736445	12737445	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 11 of 73)	intron (NM_011682, intron 11 of 73)	124790.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111837609-2	chr12	111837109	111838109	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011625, intron 9 of 16)	intron (NM_011625, intron 9 of 16)	23439.0	NM_026752	68520.0	Mm.390497	NM_026752	ENSMUSG00000021286	Zfyve21	1110013H04Rik|AW558780|C85416	zinc finger, FYVE domain containing 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180266040-2	chr1	180265540	180266540	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9740.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70609770-2	chr14	70609270	70610270	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360028, intron 9 of 14)	B2_Mm2|SINE|B2	8799.0	NM_001252666	13829.0	Mm.210863	NM_013514	ENSMUSG00000022099	Dmtn	AI325486|Epb4.9|Epb49|dematin	dematin actin binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46624361-2	chr17	46623861	46624861	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175168, intron 1 of 19)	intron (NM_175168, intron 1 of 19)	5143.0	NM_175168	71461.0	Mm.181833	NM_175168	ENSMUSG00000023972	Ptk7	8430404F20Rik|chz|mPTK7/CCK4	PTK7 protein tyrosine kinase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-83905944-2	chr9	83905444	83906444	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19193.0	NM_001305935	12040.0	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	1.5	0.0	0.0	0.0	0.0	0.0
Merged-chr7-63813139-2	chr7	63812639	63813639	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103718.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134202378-2	chr6	134201878	134202878	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	166678.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126771471-2	chr8	126770971	126771971	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77549.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36254829-2	chr1	36254329	36255329	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10527.0	NM_198899	320011.0	Mm.261022	NM_198899	ENSMUSG00000037470	Uggt1	0910001L17Rik|A930007H10Rik|AA589501|AI414429|AI448372|C820010P03Rik|GT|UGT1|Ugcgl1	UDP-glucose glycoprotein glucosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-92915376-2	chr14	92914876	92915876	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	975293.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	3.5	9.5	5.5	4.0	3.0	3.0
Merged-chr16-38239311-2	chr16	38238811	38239811	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 11 of 11)	intron (NM_001347232, intron 11 of 11)	55513.0	NM_010936	18171.0	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102948297-2	chr2	102947797	102948797	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46632.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142918794-2	chr7	142918294	142919294	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18828.0	NM_009377	21823.0	Mm.1292	NM_009377	ENSMUSG00000000214	Th	-	tyrosine hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66303691-2	chr7	66303191	66304191	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 10 of 33)	intron (NM_146191, intron 10 of 33)	78033.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-13743733-2	chr17	13743233	13744233	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022311, intron 1 of 2)	intron (NM_022311, intron 1 of 2)	-16808.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	0.0	0.0	2.0	0.0	0.0	1.0
Merged-chr15-93913700-2	chr15	93913200	93914200	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045737, intron 2 of 3)	intron (NR_045737, intron 2 of 3)	13411.0	NR_045737	77248.0	Mm.410768	NR_045737	ENSMUSG00000116360	9430014N10Rik	-	RIKEN cDNA 9430014N10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89817298-2	chr3	89816798	89817798	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-14072.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-22138570-2	chr3	22138070	22139070	+	635.474976	f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	61918.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54937011-3	chr14	54936505	54937505	+	635.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029390, intron 1 of 3)	intron (NM_029390, intron 1 of 3)	508.0	NM_029390	67272.0	Mm.41614	NM_026066	ENSMUSG00000040759	Cmtm5	1500005P16Rik|2900052H21Rik|Cklfsf5	CKLF-like MARVEL transmembrane domain containing 5	protein-coding	0.0	3.5	5.0	0.0	2.0	1.0
Merged-chr9-66594315-3	chr9	66593825	66594825	+	635.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1210.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30719839-2	chr2	30719339	30720339	+	635.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1371.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80802014-2	chr7	80801410	80802410	+	635.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 1 of 37)	intron (NM_016721, intron 1 of 37)	1421.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	30.0	68.5	34.0	39.0	51.0	30.5
Merged-chr11-69656471-2	chr11	69655971	69656971	+	635.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001301710)	TTS (NM_001301710)	1434.0	NM_009235	20670.0	Mm.347499	NM_009235	ENSMUSG00000041287	Sox15	-	SRY (sex determining region Y)-box 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34189128-2	chr8	34188628	34189628	+	635.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22416.0	NR_105820	102465211.0		NR_105820	ENSMUSG00000098785	Mir6395	Gm27561|mmu-mir-6395	microRNA 6395	ncRNA	0.0	4.0	3.0	8.0	3.5	0.5
Merged-chr16-42172728-3	chr16	42172231	42173231	+	635.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361282, intron 10 of 10)	intron (NM_001361282, intron 10 of 10)	130738.0	NR_105858	102466172.0		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62383030-3	chr15	62382534	62383534	+	635.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-163583.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-92766449-2	chr7	92765949	92766949	+	635.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_029494, intron 1 of 4)	intron (NM_029494, intron 1 of 4)	24735.0	NM_029494	75985.0	Mm.323004	NM_029494	ENSMUSG00000030643	Rab30	5033421K01Rik|AI323892|Rsb30	RAB30, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42092107-2	chr19	42091623	42092623	+	635.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_145501, intron 1 of 8)	B1_Mur3|SINE|Alu	1688.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	80.5	96.0	79.0	56.0	105.0	73.5
Merged-chr17-80139806-2	chr17	80139306	80140306	+	635.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_176963, intron 2 of 6)	B3A|SINE|B2	12335.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-23581181-1	chr9	23580681	23581681	+	635.25	f0_balb.idr	Intergenic	Intergenic	358105.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35416542-2	chr18	35416042	35417042	+	635.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360814, intron 3 of 9)	intron (NM_001360814, intron 3 of 9)	53410.0	NM_001360814	81500.0	Mm.291482	NM_030749	ENSMUSG00000024357	Sil1	1810057E01Rik|AI042831|wz	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78085483-2	chr10	78084983	78085983	+	635.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16115.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4338280-2	chr18	4337780	4338780	+	635.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 5 of 7)	PB1D10|SINE|Alu	14673.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13447238-2	chr16	13446738	13447738	+	635.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2285.0	NR_030549	100124432.0		NR_030549	ENSMUSG00000076972	Mir193b	Mir193|Mirn193b|mir-193b	microRNA 193b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101780784-2	chr11	101780284	101781284	+	635.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008815, intron 4 of 12)	intron (NM_008815, intron 4 of 12)	4526.0	NM_008815	18612.0	Mm.5025	NM_008815	ENSMUSG00000017724	Etv4	AW414408|Pea-3|Pea3	ets variant 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70535150-2	chr8	70534650	70535650	+	635.125	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001199631, exon 9 of 9)	3' UTR (NM_001199631, exon 9 of 9)	-4525.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	1.5	5.0	0.0	5.5	7.5	6.0
Merged-chr9-57558743-3	chr9	57558206	57559206	+	635.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2238.0	NM_022813	24044.0	Mm.286069	NM_022813	ENSMUSG00000040188	Scamp2	AI875466|Sc2	secretory carrier membrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60712023-1	chr13	60711523	60712523	+	635.0	f1_balb.idr	intron (NM_134062, intron 3 of 26)	intron (NM_134062, intron 3 of 26)	74341.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	6.5	19.5	15.0	7.0	12.5	14.5
Merged-chr17-46441077-2	chr17	46440577	46441577	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2600.0	NM_144856	108114.0	Mm.387538	NM_144856	ENSMUSG00000067144	Slc22a7	NLT|OAT2	solute carrier family 22 (organic anion transporter), member 7	protein-coding	0.0	0.0	1.5	0.0	0.0	1.5
Merged-chr9-44506246-2	chr9	44505746	44506746	+	635.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_030256, exon 7 of 9)	exon (NM_030256, exon 7 of 9)	7110.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-44791354-2	chr2	44790854	44791854	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172662, intron 3 of 10)	intron (NM_172662, intron 3 of 10)	70268.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-30447858-3	chr18	30447257	30448257	+	635.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	174892.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34199784-3	chr10	34199285	34200285	+	635.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	7766.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167070380-2	chr2	167069880	167070880	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5087.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91845071-2	chr16	91844548	91845548	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 19 of 28)	intron (NM_001110275, intron 19 of 28)	86582.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79877772-2	chr11	79877272	79878272	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84615.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	1.0	10.0	0.0	6.5	10.0	2.5
Merged-chr2-66143047-2	chr2	66142547	66143547	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18254.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43400311-2	chr13	43399811	43400811	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023554, intron 3 of 7)	intron (NM_023554, intron 3 of 7)	1935.0	NM_023554	70078.0	Mm.439927	NM_023554	ENSMUSG00000063200	Nol7	2210008F15Rik|5730556I21Rik|NOP27|RARG-1	nucleolar protein 7	protein-coding	0.0	1.0	0.5	0.0	0.0	0.0
Merged-chr3-127780926-2	chr3	127780426	127781426	+	635.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027808)	promoter-TSS (NM_027808)	-399.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	41.5	63.0	62.0	61.5	125.0	78.0
Merged-chr5-37117713-2	chr5	37117213	37118213	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347348, intron 8 of 20)	intron (NM_001347348, intron 8 of 20)	32477.0	NM_001347348	76071.0	Mm.85280	NM_178394	ENSMUSG00000063646	Jakmip1	5830437M04Rik|C330021K24Rik|Gababrbp|Marlin-1	janus kinase and microtubule interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	8.0	0.0
Merged-chr10-48661396-2	chr10	48660896	48661896	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	1126541.0	NM_001358866	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	0.0	0.0	2.5	11.0	0.0	0.0
Merged-chr15-98982279-2	chr15	98981779	98982779	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3686.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158213237-2	chr2	158212737	158213737	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001131021, intron 5 of 15)	intron (NM_001131021, intron 5 of 15)	15987.0	NM_001131021	228846.0	Mm.187574	NM_177657	ENSMUSG00000037813	D630003M21Rik	-	RIKEN cDNA D630003M21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10983357-2	chr19	10982857	10983857	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034898, intron 2 of 6)	intron (NM_001034898, intron 2 of 6)	-8687.0	NM_023529	69826.0	Mm.273404	NM_023529	ENSMUSG00000024731	Ms4a10	2010001N17Rik	membrane-spanning 4-domains, subfamily A, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84732319-2	chr3	84731819	84732819	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66127.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46247018-2	chr17	46246518	46247518	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009085, intron 2 of 8)	intron (NM_009085, intron 2 of 8)	1027.0	NM_009085	20016.0	Mm.3458	NM_009085	ENSMUSG00000067148	Polr1c	40kDa|AA409007|AA959927|AL024089|Polr1e|RPA40|Rpo1-1	polymerase (RNA) I polypeptide C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-56638487-2	chr9	56637987	56638987	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181074, intron 6 of 6)	intron (NM_181074, intron 6 of 6)	-2839.0	NM_001311076	235402.0	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24021510-1	chr17	24021010	24022010	+	635.0	f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-16733.0	NM_175440	213171.0	Mm.133083	NM_175440	ENSMUSG00000050762	Prss27	CAPH2|Mpn|marapsin	protease, serine 27	protein-coding	0.0	20.0	4.0	0.0	16.5	1.0
Merged-chr11-98706791-2	chr11	98706291	98707291	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361995, intron 22 of 25)	intron (NM_001361995, intron 22 of 25)	5478.0	NM_009971	12985.0	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129300666-1	chr2	129300166	129301166	+	635.0	f0_c57.idr	3' UTR (NM_010554, exon 7 of 7)	3' UTR (NM_010554, exon 7 of 7)	3296.0	NR_040371	100503468.0	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	-	predicted gene 14023	ncRNA	0.0	0.0	5.5	1.0	5.5	3.0
Merged-chr15-96197533-3	chr15	96197030	96198030	+	635.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040423, intron 1 of 5)	intron (NR_040423, intron 1 of 5)	444.0	NR_040423	70040.0	Mm.437832	NR_040423		2610037D02Rik	AU024679	RIKEN cDNA 2610037D02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155989865-1	chr4	155989365	155990365	+	635.0	f1_c57bl6.idr	3' UTR (NM_080445, exon 1 of 1)	3' UTR (NM_080445, exon 1 of 1)	2813.0	NM_080445	117592.0	Mm.440185	NM_080445	ENSMUSG00000050796	B3galt6	BB129894|GalTII	UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	protein-coding	7.0	0.0	7.0	3.5	7.5	2.0
Merged-chr3-89237147-2	chr3	89236647	89237647	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_121683, intron 9 of 10)	B1_Mus2|SINE|Alu	7866.0	NR_121683	360213.0	Mm.331156	NM_183037	ENSMUSG00000042766	Trim46	TRIFIC	tripartite motif-containing 46	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-6068044-2	chr5	6067544	6068544	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-318727.0	NM_027399	70358.0	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55782025-2	chr16	55781525	55782525	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40113.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-48590615-1	chr14	48590115	48591115	+	635.0	f0_balb.idr	Intergenic	Intergenic	72119.0	NM_001360226	18424.0	Mm.134516	NM_144841	ENSMUSG00000021848	Otx2	E130306E05Rik	orthodenticle homeobox 2	protein-coding	0.0	1.0	1.0	5.5	6.5	3.5
Merged-chr4-50639479-2	chr4	50638979	50639979	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	-577199.0	NM_001162865	74914.0	Mm.159368	NM_001162865	ENSMUSG00000039555	Cylc2	4930488P18Rik	cylicin, basic protein of sperm head cytoskeleton 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37001418-3	chr1	37000922	37001922	+	635.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-61895.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52537772-1	chr2	52537272	52538272	+	635.0	f0_balb.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	20839.0	NM_146123	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111064984-2	chr9	111064484	111065484	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7466.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.0	8.5	0.0	3.0	3.5	1.0
Merged-chr3-126918678-1	chr3	126918178	126919178	+	635.0	f1_balb.idr	Intergenic	B4A|SINE|B4	24708.0	NM_001034168	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	1.5	9.0	3.0	5.0	4.5	0.0
Merged-chr4-134627144-2	chr4	134626644	134627644	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 2 of 11)	intron (NM_207237, intron 2 of 11)	-59293.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-62727270-2	chr1	62726770	62727770	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	23953.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46394959-2	chr8	46394459	46395459	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	-76078.0	NM_007981	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100169265-1	chr11	100168765	100169765	+	635.0	f0_balb.idr	Intergenic	Intergenic	-23339.0	NM_008471	16669.0	Mm.439699	NM_008471	ENSMUSG00000020911	Krt19	AI663979|CK-19|EndoC|K19|Krt-1.19|Krt1-19	keratin 19	protein-coding	2.0	14.0	3.0	3.0	1.0	0.0
Merged-chr5-92436621-2	chr5	92436121	92437121	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1422.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98264708-2	chr13	98264208	98265208	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271391, intron 1 of 7)	B1_Mur2|SINE|Alu	1632.0	NM_001271388	68558.0	Mm.209642	NM_023472	ENSMUSG00000021661	Ankra2	1110004M18Rik|Ankra	ankyrin repeat, family A (RFXANK-like), 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118114734-3	chr7	118114228	118115228	+	635.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170669, intron 3 of 4)	intron (NM_170669, intron 3 of 4)	1419.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	5.0	32.0	3.5	30.5	34.0	11.0
Merged-chr7-64035731-2	chr7	64035231	64036231	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96816.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-85928735-2	chr2	85928235	85929235	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	5465.0	NM_146584	258577.0	Mm.377575	NM_146584	ENSMUSG00000042863	Olfr1026	MOR196-4	olfactory receptor 1026	protein-coding	0.0	0.0	1.0	0.0	5.5	2.5
Merged-chr15-64031877-1	chr15	64031377	64032377	+	635.0	f0_balb.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	27887.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21573836-2	chr19	21573336	21574336	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	78955.0	NM_025423	66206.0	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54317297-1	chr12	54316797	54317797	+	635.0	f0_c57.idr	Intergenic	Intergenic	74021.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	0.0	5.0	0.0	1.0	1.5	3.5
Merged-chr5-41526483-1	chr5	41525983	41526983	+	635.0	f1_c57bl6.idr	Intergenic	Intergenic	181208.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	23.5	42.5	34.5	2.5	3.5	11.5
Merged-chr3-84033731-2	chr3	84033231	84034231	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172681, intron 2 of 34)	intron (NM_172681, intron 2 of 34)	6430.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-174707421-1	chr1	174706921	174707921	+	635.0	f1_c57bl6.idr	intron (NM_019445, intron 13 of 17)	intron (NM_019445, intron 13 of 17)	205596.0	NM_019445	54418.0	Mm.330620	NM_019445	ENSMUSG00000028354	Fmn2	AU024104	formin 2	protein-coding	0.0	0.0	10.5	0.0	0.0	7.0
Merged-chr17-83854373-2	chr17	83853873	83854873	+	635.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155490)	promoter-TSS (NR_155490)	45.0	NR_155490	320021.0	Mm.379475	NR_155490		C430042M11Rik	-	RIKEN cDNA C430042M11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-27091744-2	chr6	27091244	27092244	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	845006.0	NR_030420	735266.0		NR_030420	ENSMUSG00000076067	Mir592	Mirn592|mir-592|mmu-mir-592	microRNA 592	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39648734-2	chr18	39648234	39649234	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-124763.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125723739-2	chr8	125723239	125724239	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10464.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38864289-2	chr2	38863789	38864789	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010264, intron 3 of 10)	intron (NM_010264, intron 3 of 10)	10459.0	NR_029904	723903.0		NR_029904	ENSMUSG00000065578	Mir181b-2	Mirn181b-2|mir-181b-2	microRNA 181b-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87663615-1	chr16	87663115	87664115	+	635.0	f1_balb.idr	Intergenic	Intergenic	-35339.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	31.5	86.5	54.0	64.5	127.0	55.5
Merged-chr5-4529488-2	chr5	4528988	4529988	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	228728.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0.0	1.5	0.0	0.0	1.5	0.0
Merged-chr19-55658153-2	chr19	55657653	55658653	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	RSINE1|SINE|B4	44051.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12546500-2	chr18	12546000	12547000	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010680, intron 60 of 74)	intron (NM_010680, intron 60 of 74)	42301.0	NM_001347461	16774.0	Mm.42012	NM_010680	ENSMUSG00000024421	Lama3	Lama3B|[a]3B	laminin, alpha 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3799833-1	chr4	3799333	3800333	+	635.0	f1_balb.idr	Intergenic	Intergenic	35822.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	6.0	1.0	5.0	2.5	0.0	10.0
Merged-chr17-34098672-2	chr17	34098172	34099172	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-3363.0	NR_046183	414076.0	Mm.473092	NR_046183	ENSMUSG00000098197	BC051537	-	cDNA sequence BC051537	ncRNA	1.5	3.0	0.0	1.5	0.5	0.0
Merged-chr1-85652069-1	chr1	85651569	85652569	+	635.0	f0_balb.idr	intron (NM_013673, intron 1 of 19)	RSINE1|SINE|B4	2081.0	NM_001313714	20684.0	Mm.290906	NM_013673	ENSMUSG00000026222	Sp100	A430075G10Rik	nuclear antigen Sp100	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70828149-2	chr17	70827649	70828649	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	18628.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95893335-2	chr16	95892835	95893835	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040484, intron 1 of 3)	intron (NR_040484, intron 1 of 3)	5378.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-34663250-2	chr12	34662747	34663747	+	635.0	f0_balb.idr|f1_balb.idr	intron (NM_001271386, intron 3 of 27)	L1_Mus4|LINE|L1	-134358.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	30.0	62.0	43.5	9.0	21.0	15.5
Merged-chr11-63402930-1	chr11	63402430	63403430	+	635.0	f0_c57.idr	Intergenic	Intergenic	270127.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	0.0	1.0	0.5	0.0	0.0	0.5
Merged-chr11-116839758-2	chr11	116839258	116840258	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033398, intron 4 of 5)	intron (NM_033398, intron 4 of 5)	3691.0	NM_033398	107817.0	Mm.481684	NM_033398	ENSMUSG00000056962	Jmjd6	5730436I23Rik|D11Ertd195e|PSR|PtdSerR|Ptdsr|mKIAA0585	jumonji domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70014476-2	chr8	70013957	70014957	+	635.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-18073.0	NM_145596	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	3.5	5.5	3.5	0.0	0.0	3.0
Merged-chr19-61097915-1	chr19	61097415	61098415	+	635.0	f0_balb.idr	intron (NR_131953, intron 3 of 6)	intron (NR_131953, intron 3 of 6)	42925.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56762898-2	chr17	56762398	56763398	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1853.0	NM_001360405	224907.0	Mm.293973	NM_144858	ENSMUSG00000007603	Dus3l	AI662135|AW557805	dihydrouridine synthase 3-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-68143085-1	chr18	68142585	68143585	+	635.0	f0_balb.idr	intron (NM_172631, intron 3 of 5)	L1_Mur3|LINE|L1	-84861.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117537192-1	chr4	117536692	117537692	+	635.0	f0_balb.idr	Intergenic	Intergenic	-13132.0	NM_001356404	140546.0	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	8.0	1.0	0.5	0.5	16.0	0.0
Merged-chr3-116120985-1	chr3	116120485	116121485	+	635.0	f1_c57bl6.idr	exon (NM_011693, exon 5 of 9)	exon (NM_011693, exon 5 of 9)	8703.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	9.5	12.0	19.0	7.0	17.5	10.0
Merged-chr15-76283303-2	chr15	76282803	76283803	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028852, intron 1 of 4)	intron (NM_028852, intron 1 of 4)	7665.0	NR_037240	100526548.0		NR_037240	ENSMUSG00000093169	Mir3079	mmu-mir-3079	microRNA 3079	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9697425-2	chr3	9696925	9697925	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 6 of 7)	intron (NM_053182, intron 6 of 7)	-87340.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112264556-2	chr5	112264056	112265056	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312893, intron 4 of 5)	intron (NM_001312893, intron 4 of 5)	8736.0	NM_001312893	12960.0	Mm.29488	NM_023695	ENSMUSG00000029343	Crybb1	3110006K12Rik|BB1CRY	crystallin, beta B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146082151-2	chr3	146081651	146082651	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172864, intron 8 of 22)	intron (NM_172864, intron 8 of 22)	25885.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	0.0	1.0	3.0	0.0	9.5	2.0
Merged-chr16-30966677-1	chr16	30966177	30967177	+	635.0	f1_c57bl6.idr	intron (NM_198626, intron 3 of 3)	intron (NM_198626, intron 3 of 3)	114755.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0.0	2.5	0.0	0.0	1.5	0.0
Merged-chr11-115718709-2	chr11	115718209	115719209	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-10112.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57095659-1	chr17	57095159	57096159	+	635.0	f1_c57bl6.idr	intron (NR_033508, intron 3 of 3)	B3A|SINE|B2	-7877.0	NM_009451	22153.0	Mm.7420	NM_009451	ENSMUSG00000062591	Tubb4a	AI325297|M(beta)4|Tubb|Tubb4	tubulin, beta 4A class IVA	protein-coding	4.5	3.0	9.0	0.0	0.5	3.5
Merged-chr5-69521002-2	chr5	69520502	69521502	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023784, intron 4 of 5)	intron (NM_023784, intron 4 of 5)	21645.0	NM_023784	75581.0	Mm.154776	NM_023784	ENSMUSG00000029158	Yipf7	2310016N21Rik|Yip1b	Yip1 domain family, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-50036412-1	chr18	50035912	50036912	+	635.0	f1_balb.idr	intron (NM_001360935, intron 1 of 1)	intron (NM_001360935, intron 1 of 1)	5428.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	27.5	24.0	25.0	25.0	17.5	43.5
Merged-chr17-24867604-1	chr17	24867104	24868104	+	635.0	f1_balb.idr	Intergenic	Intergenic	-11166.0	NM_008340	16005.0	Mm.3135	NM_008340	ENSMUSG00000046070	Igfals	ALS|Albs|mKIAA4111	insulin-like growth factor binding protein, acid labile subunit	protein-coding	4.5	0.0	0.0	6.5	1.0	0.5
Merged-chr2-165912993-2	chr2	165912493	165913493	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-28155.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-70580840-1	chr18	70580340	70581340	+	635.0	f0_balb.idr	intron (NM_010773, intron 2 of 6)	intron (NM_010773, intron 2 of 6)	12548.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-65351077-2	chr14	65350577	65351577	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-7599.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	10.5	0.0	3.5	10.0	0.0	6.0
Merged-chr3-89899738-2	chr3	89899238	89900238	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 1 of 9)	Lx7|LINE|L1	13458.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	0.0	2.0	3.0	0.0	1.5	1.5
Merged-chr3-135443556-2	chr3	135443056	135444056	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356598, intron 2 of 8)	intron (NM_001356598, intron 2 of 8)	4430.0	NM_001356597	66105.0	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39328827-2	chr6	39328327	39329327	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48608.0	NR_155076	72144.0	Mm.482167	NM_028123	ENSMUSG00000029924	Slc37a3	2610507O21Rik|AU044904	solute carrier family 37 (glycerol-3-phosphate transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-89041426-2	chr8	89040926	89041926	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021390, intron 2 of 3)	CpG	2736.0	NM_021390	58198.0	Mm.214361	NM_021390	ENSMUSG00000031665	Sall1	Msal-3	spalt like transcription factor 1	protein-coding	1.5	0.0	1.5	9.0	0.0	0.5
Merged-chr15-62393310-2	chr15	62392762	62393762	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-173811.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	27.0	57.5	61.5	26.5	70.0	45.5
Merged-chr1-163403318-2	chr1	163402818	163403818	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178883, intron 1 of 4)	intron (NM_178883, intron 1 of 4)	351.0	NR_132627	98376.0	Mm.32901	NM_178883	ENSMUSG00000040124	Gorab	NTKL-BP1|SCYL1-BP1|Scyl1bp1	golgin, RAB6-interacting	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75155741-2	chr8	75155241	75156241	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46232.0	NM_008566	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	18.5	2.0	17.0	7.5	14.5	13.5
Merged-chr19-37489055-2	chr19	37488555	37489555	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23801.0	NR_131009	78640.0	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	3.0	4.0	1.5	2.5	3.5	2.0
Merged-chr1-138841792-1	chr1	138841292	138842292	+	635.0	f0_balb.idr	intron (NM_001025565, intron 1 of 4)	CpG	652.0	NM_001042577	16876.0	Mm.250732	NM_010714	ENSMUSG00000019230	Lhx9	3110009O07Rik|BB104635|LH2B	LIM homeobox protein 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156681973-2	chr1	156681462	156682462	+	635.0	f0_balb.idr|f1_balb.idr	intron (NM_145413, intron 7 of 7)	L1ME4c|LINE|L1	-7623.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	17.0	41.5	33.0	77.0	124.5	86.5
Merged-chr2-103050819-2	chr2	103050319	103051319	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175094, intron 2 of 10)	intron (NM_175094, intron 2 of 10)	22694.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	5.0	8.0	8.5	4.5	15.0	16.5
Merged-chr7-99153587-2	chr7	99153087	99154087	+	635.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026384)	TTS (NM_026384)	-12443.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0.0	2.5	0.0	0.0	0.0	0.0
Merged-chr14-78527074-2	chr14	78526574	78527574	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164503, intron 1 of 11)	intron (NM_001164503, intron 1 of 11)	-4372.0	NM_001346784	219181.0	Mm.89413	NM_001164503	ENSMUSG00000022016	Akap11	6330501D17Rik|AKAP220|Gm80|PRKA11|mKIAA0629	A kinase (PRKA) anchor protein 11	protein-coding	0.0	1.0	3.0	0.0	1.5	0.5
Merged-chr14-20848443-3	chr14	20847943	20848943	+	635.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11781.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24595830-2	chr17	24595330	24596330	+	635.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001286720)	TTS (NM_001286720)	36797.0	NM_011647	22084.0	Mm.30435	NM_011647	ENSMUSG00000002496	Tsc2	Nafld|Tcs2	tuberous sclerosis 2	protein-coding	0.0	0.0	0.0	0.0	3.5	2.0
Merged-chr6-50302216-2	chr6	50301716	50302716	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027881, intron 19 of 21)	intron (NM_027881, intron 19 of 21)	-40447.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-117628919-2	chr12	117628419	117629419	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 9 of 27)	MER5A|DNA|hAT-Charlie	112440.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115997233-2	chr6	115996733	115997733	+	634.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2228.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31168342-2	chr6	31167795	31168795	+	634.916626	f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	50179.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59182160-3	chr2	59181696	59182696	+	634.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	21346.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-73760159-2	chr18	73759657	73760657	+	634.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5678.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr10-99469438-2	chr10	99468938	99469938	+	634.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139733.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-99936932-3	chr4	99936419	99937419	+	634.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028132, intron 1 of 10)	intron (NM_028132, intron 1 of 10)	7468.0	NM_028132	72157.0	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6977615-2	chr19	6977115	6978115	+	634.833313	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008889)	TTS (NM_008889)	1777.0	NM_001360288	14227.0	Mm.4234	NM_008020	ENSMUSG00000056629	Fkbp2	mFKBP13|mFKBP2	FK506 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101670600-3	chr4	101670105	101671105	+	634.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	22822.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	2.5	2.0	7.0	3.0	0.0	1.5
Merged-chr18-57583664-3	chr18	57583159	57584159	+	634.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029290, intron 3 of 6)	intron (NM_029290, intron 3 of 6)	-31262.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85258824-1	chr1	85258324	85259324	+	634.75	f1_balb.idr	intron (NM_175219, intron 3 of 7)	intron (NM_175219, intron 3 of 7)	11742.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81553469-2	chr10	81552963	81553963	+	634.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5981.0	NR_074087	14797.0	Mm.180013	NM_010347	ENSMUSG00000054452	Aes	AL024115|Esp1|Grg|Grg-5|Grg5|Tle5	amino-terminal enhancer of split	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36888502-3	chr15	36888000	36889000	+	634.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20A4|LTR|ERVK	-91571.0	NM_001253806	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121674313-4	chr3	121673822	121674822	+	634.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033814, intron 3 of 5)	intron (NM_001033814, intron 3 of 5)	3559.0	NM_001033814	619318.0	Mm.371258	NM_001033814	ENSMUSG00000074248	4930432M17Rik	-	RIKEN cDNA 4930432M17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5137784-2	chr2	5137284	5138284	+	634.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028804)	promoter-TSS (NM_028804)	8.0	NM_028804	74186.0	Mm.274715	NM_028804	ENSMUSG00000026676	Ccdc3	2310045O21Rik	coiled-coil domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-32480893-3	chr6	32480371	32481371	+	634.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-30270.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150919479-3	chr2	150918969	150919969	+	634.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027014, intron 4 of 6)	L1Md_F2|LINE|L1	9875.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108459016-3	chr3	108458464	108459464	+	634.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358064, intron 21 of 21)	intron (NM_001358064, intron 21 of 21)	-13705.0	NM_001204979	20226.0	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126628213-1	chr7	126627713	126628713	+	634.666687	f0_c57.idr	Intergenic	Intergenic	-2743.0	NM_019738	56312.0	Mm.18742	NM_019738	ENSMUSG00000030717	Nupr1	2310032H04Rik|Com1|p8	nuclear protein transcription regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-26311719-1	chr12	26311219	26312219	+	634.666687	f0_balb.idr	intron (NM_080563, intron 8 of 8)	intron (NM_080563, intron 8 of 8)	-34991.0	NR_130981	75243.0	Mm.444753	NR_130981	ENSMUSG00000114048	4930549C15Rik	-	RIKEN cDNA 4930549C15 gene	ncRNA	5.5	3.0	7.5	1.0	9.0	5.0
Merged-chr2-153135725-2	chr2	153135225	153136225	+	634.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 8 of 12)	RSINE1|SINE|B4	-25576.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127608249-2	chr3	127607749	127608749	+	634.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_197997, intron 19 of 25)	B2_Mm2|SINE|B2	-24887.0	NM_009718	11924.0	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding	5.0	0.5	4.0	9.0	3.0	0.5
Merged-chr2-102943321-2	chr2	102942821	102943821	+	634.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41656.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	10.5	49.0	45.0	26.0	48.0	36.5
Merged-chr13-99299486-4	chr13	99299057	99300057	+	634.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45121.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	21.0	5.0	3.0	3.5	13.0	7.5
Merged-chr7-126424445-3	chr7	126423927	126424927	+	634.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-4340.0	NM_030566	70314.0	Mm.35467	NM_030566	ENSMUSG00000030727	Rabep2	2610011A08Rik|AI462746|Fra	rabaptin, RAB GTPase binding effector protein 2	protein-coding	3.5	14.5	13.0	19.0	9.5	6.5
Merged-chr14-63846051-3	chr14	63845550	63846550	+	634.511108	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14262.0	NM_028228	72400.0	Mm.379214	NM_028228	ENSMUSG00000021958	Pinx1	2210403I16Rik|2610028A01Rik|67-11-3|AU024023|LPTS|LPTS1	PIN2/TERF1 interacting, telomerase inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153492259-2	chr2	153491759	153492759	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134300, intron 1 of 10)	intron (NM_001134300, intron 1 of 10)	37712.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84743526-2	chr12	84743026	84744026	+	634.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29586.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4261766-2	chr8	4261266	4262266	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011592, intron 11 of 12)	B1F|SINE|Alu	-2492.0	NM_183315	330695.0	Mm.34210	NM_183315	ENSMUSG00000048644	Ctxn1	BC028881|Ctxn	cortexin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128436539-2	chr2	128436039	128437039	+	634.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7188.0	NR_028590	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108873956-3	chr6	108873454	108874454	+	634.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER54B|LTR|ERVL	45313.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	4.0	2.0	8.5	4.0	0.0	6.5
Merged-chr6-90702430-2	chr6	90701930	90702930	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356440, intron 1 of 13)	intron (NM_001356440, intron 1 of 13)	14099.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54720019-2	chr6	54719519	54720519	+	634.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38395.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	0.0	0.0	0.0	2.0	2.0	4.0
Merged-chr7-126399688-4	chr7	126399181	126400181	+	634.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2944.0	NM_010900	18020.0	Mm.1389	NM_010900	ENSMUSG00000030722	Nfatc2ip	D7Ertd304e|NIP45	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120729925-2	chr7	120729425	120730425	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164580, intron 2 of 2)	intron (NM_001164580, intron 2 of 2)	-9632.0	NM_177697	233813.0	Mm.389939	NM_177697	ENSMUSG00000030889	Vwa3a	E030013G06Rik	von Willebrand factor A domain containing 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-82051746-2	chr6	82051196	82052196	+	634.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_145570, intron 1 of 2)	intron (NM_145570, intron 1 of 2)	10068.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	1.0	2.0	5.5	5.5	0.0	7.0
Merged-chr15-37906279-2	chr15	37905767	37906767	+	634.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	54589.0	NM_001357023	382985.0	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-24431034-2	chr8	24430534	24431534	+	634.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7912.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31939810-2	chr16	31939310	31940310	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172822, intron 1 of 2)	B1F|SINE|Alu	5959.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142595388-2	chr3	142594888	142595888	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010259, intron 1 of 10)	intron (NM_010259, intron 1 of 10)	541.0	NM_010259	14468.0	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	9.0	13.5	11.0	8.5	10.5	3.5
Merged-chr6-114641401-2	chr6	114640901	114641901	+	634.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1696.0	NM_028835	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-25045013-2	chr19	25044539	25045539	+	634.5	f0_balb.idr|f1_balb.idr	intron (NM_028785, intron 1 of 47)	intron (NM_028785, intron 1 of 47)	45510.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	7.5	41.0	11.5	6.0	27.5	14.5
Merged-chr2-164683586-2	chr2	164683086	164684086	+	634.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR33|LTR|ERVK	-1521.0	NM_001012704	408190.0	Mm.376205	NM_001012704	ENSMUSG00000067704	Wfdc13	Wfdc13l1	WAP four-disulfide core domain 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142406785-2	chr7	142406285	142407285	+	634.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-18915.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65956759-2	chr5	65956259	65957259	+	634.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10365.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96421016-2	chr11	96420516	96421516	+	634.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43531.0	NR_033524	100038600.0	Mm.483549	NR_033524		Gm11529	-	predicted gene 11529	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117796259-2	chr10	117795759	117796759	+	634.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3554.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr13-73725594-2	chr13	73725094	73726094	+	634.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-24814.0	NM_028878	74338.0	Mm.271635	NM_028878	ENSMUSG00000021565	Slc6a19	4632401C08Rik|B<0>AT1	solute carrier family 6 (neurotransmitter transporter), member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-10536741-2	chr5	10536241	10537241	+	634.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-328288.0	NR_003596	623849.0	Mm.335888	NR_003596	ENSMUSG00000091422	Gm6455	EG623849	predicted gene 6455	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70500990-2	chr11	70500490	70501490	+	634.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-4284.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126795997-2	chr7	126795497	126796497	+	634.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001177308, exon 7 of 9)	exon (NM_001177308, exon 7 of 9)	3181.0	NM_001177307	11674.0	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129249463-2	chr4	129248963	129249963	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285867, intron 1 of 6)	intron (NM_001285867, intron 1 of 6)	-1020.0	NM_001033189	97130.0	Mm.331907	NM_001033189	ENSMUSG00000050390	C77080	mKIAA1522	expressed sequence C77080	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10961722-2	chr16	10961222	10962222	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 3 of 3)	ID_B1|SINE|B4	31399.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60702787-2	chr11	60702287	60703287	+	634.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001159405, exon 2 of 22)	exon (NM_001159405, exon 2 of 22)	3097.0	NM_008502	16897.0	Mm.285453	NM_008502	ENSMUSG00000020536	Llgl1	AI325176|Lgl1|Llglh|Mgl1	LLGL1 scribble cell polarity complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118317253-2	chr11	118316753	118317753	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011594, intron 3 of 4)	intron (NM_011594, intron 3 of 4)	25281.0	NM_021440	58251.0	Mm.439815	NM_021440	ENSMUSG00000076433	Cep295nl	Ddc8|FS39|Kiaa1731nl	CEP295 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31066195-2	chr6	31065695	31066695	+	634.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3102.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130026841-2	chr5	130026341	130027341	+	634.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2460.0	NM_133768	109900.0	Mm.23869	NM_133768	ENSMUSG00000025533	Asl	2510006M18Rik|ASAL	argininosuccinate lyase	protein-coding	10.5	1.0	4.0	6.5	1.5	2.0
Merged-chr9-59770597-2	chr9	59770097	59771097	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173018, intron 1 of 43)	5S|rRNA|rRNA	19423.0	NM_173018	270163.0	Mm.249545	NM_173018	ENSMUSG00000039585	Myo9a	4732465J09Rik|C130068I12Rik|C230003M11	myosin IXa	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4965110-2	chr16	4964610	4965610	+	634.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028301)	promoter-TSS (NM_028301)	822.0	NM_001271586	74684.0	Mm.374835	NM_001271586	ENSMUSG00000022543	4930451G09Rik	-	RIKEN cDNA 4930451G09 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91685291-2	chr16	91684791	91685791	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021720, intron 3 of 9)	intron (NM_021720, intron 3 of 9)	3437.0	NM_021720	60364.0	Mm.328698	NM_021720	ENSMUSG00000022960	Donson	1110025J21Rik|AI845729|ORF60	downstream neighbor of SON	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-16087834-2	chr4	16087334	16088334	+	634.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73946.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr3-122151057-3	chr3	122150558	122151558	+	634.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007378, intron 36 of 49)	intron (NM_007378, intron 36 of 49)	-94499.0	NM_008129	14630.0	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-78302513-1	chr16	78302013	78303013	+	634.5	f0_balb.idr	intron (NM_001025192, intron 1 of 6)	intron (NM_001025192, intron 1 of 6)	842.0	NM_001276263	13052.0	Mm.66222	NM_009988	ENSMUSG00000022865	Cxadr	2610206D03Rik|AU016810|AW553441|CAR|MCAR|MCVADR	coxsackie virus and adenovirus receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25574104-2	chr2	25573604	25574604	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029293, intron 2 of 2)	(GGGTG)n|Simple_repeat|Simple_repeat	767.0	NM_029293	75454.0	Mm.458079	NM_029293	ENSMUSG00000036504	Phpt1	1700008C22Rik|PHP|Php14	phosphohistidine phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124497738-2	chr5	124497238	124498238	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021430, intron 6 of 6)	intron (NM_021430, intron 6 of 6)	14583.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43810737-2	chr1	43810237	43811237	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026430, intron 1 of 14)	intron (NM_026430, intron 1 of 14)	16971.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4535674-2	chr11	4535174	4536174	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028860, intron 1 of 17)	intron (NM_028860, intron 1 of 17)	59141.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-20943456-2	chr2	20942956	20943956	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128084, intron 1 of 24)	intron (NM_001128084, intron 1 of 24)	24265.0	NM_001081364	71435.0	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79221885-2	chr3	79221407	79222407	+	634.5	f0_balb.idr|f1_c57bl6.idr	intron (NR_045502, intron 1 of 2)	intron (NR_045502, intron 1 of 2)	8988.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	10.5	17.5	10.0	1.0	13.5	6.5
Merged-chr10-63291656-2	chr10	63291156	63292156	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030114, intron 15 of 25)	intron (NM_030114, intron 15 of 25)	47379.0	NM_019812	93759.0	Mm.351459	NM_019812	ENSMUSG00000020063	Sirt1	AA673258|SIR2L1|Sir2|Sir2a|Sir2alpha	sirtuin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10246261-2	chr19	10245761	10246761	+	634.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_198114, exon 20 of 20)	3' UTR (NM_198114, exon 20 of 20)	-5513.0	NM_001033481	225908.0	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57149741-2	chr17	57149241	57150241	+	634.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011617)	promoter-TSS (NM_011617)	36.0	NM_011617	21948.0	Mm.42228	NM_011617	ENSMUSG00000019489	Cd70	CD27LG|Cd27l|Tnfsf7|Tnlg8a	CD70 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3900030-2	chr12	3899530	3900530	+	634.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001271753, exon 15 of 23)	exon (NM_001271753, exon 15 of 23)	8286.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47581139-2	chr9	47580639	47581639	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	50787.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	9.0	14.5	10.5	38.5	29.0	26.0
Merged-chr10-81346925-2	chr10	81346425	81347425	+	634.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010440, exon 7 of 9)	exon (NM_010440, exon 7 of 9)	3501.0	NM_001163165	15353.0	Mm.38474	NM_010440	ENSMUSG00000020232	Hmg20b	AW610687|BRAF35|Hmgx2|Hmgxb2|Smarce1r	high mobility group 20B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21079724-2	chr9	21079224	21080224	+	634.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_027911, exon 8 of 13)	exon (NM_027911, exon 8 of 13)	-4136.0	NR_106050	102465656.0		NR_106050	ENSMUSG00000098907	Mir7082	Gm27933|mmu-mir-7082	microRNA 7082	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-23058970-2	chr8	23058470	23059470	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_102385, intron 1 of 45)	intron (NR_102385, intron 1 of 45)	711.0	NR_102385	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr6-97305129-2	chr6	97304629	97305629	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 18 of 23)	intron (NM_145148, intron 18 of 23)	-52349.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	10.0	12.5	5.0	1.5	4.0	4.5
Merged-chr7-110067147-2	chr7	110066647	110067647	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009281, intron 1 of 15)	ORR1A2|LTR|ERVL-MaLR	5445.0	NM_009281	20841.0	Mm.10815	NM_009281	ENSMUSG00000061079	Zfp143	AA959806|AU015869|D7Ertd805e|KRAB14|SBF|Staf|Zfp79|Zfp80-rs1|Znf143|pHZ-1	zinc finger protein 143	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-57744718-2	chr18	57744207	57745207	+	634.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35288.0	NR_152224	100503033.0	Mm.381112	NR_152224		Gm19519	-	predicted gene, 19519	ncRNA	3.5	24.0	13.5	2.5	17.0	2.0
Merged-chr3-31139925-2	chr3	31139425	31140425	+	634.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-9995.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110242185-2	chr7	110241690	110242690	+	634.5	f0_balb.idr|f0_c57.idr	intron (NM_009302, intron 1 of 11)	intron (NM_009302, intron 1 of 11)	20487.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71544530-2	chr2	71544030	71545030	+	634.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010054, exon 3 of 3)	exon (NM_010054, exon 3 of 3)	2224.0	NM_010054	13392.0	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120590670-2	chr5	120590139	120591139	+	634.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_029408, intron 1 of 4)	ORR1A2|LTR|ERVL-MaLR	1616.0	NM_029408	75732.0	Mm.425285	NM_029408	ENSMUSG00000029601	Iqcd	4933433C09Rik|AI662646	IQ motif containing D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46736349-2	chr17	46735849	46736849	+	634.400024	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001305990, exon 4 of 4)	3' UTR (NM_001305990, exon 4 of 4)	-7184.0	NM_010321	14711.0	Mm.29395	NM_010321	ENSMUSG00000002769	Gnmt	-	glycine N-methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102884505-4	chr14	102884020	102885020	+	634.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98112.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-9515945-4	chr16	9515478	9516478	+	634.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	476555.0	NM_008170	14811.0	Mm.2953	NM_008170	ENSMUSG00000059003	Grin2a	GluN2A|GluRepsilon1|NMDAR2A|NR2A	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-89609405-2	chr18	89608905	89609905	+	634.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039173, intron 1 of 7)	intron (NM_001039173, intron 1 of 7)	159731.0	NM_001039173	623279.0	Mm.447164	NM_001039173	ENSMUSG00000073514	Dok6	Dok-6	docking protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95326092-3	chr4	95325584	95326584	+	634.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-231423.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115248181-3	chr11	115247653	115248653	+	634.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19090.0	NM_010350	14813.0	Mm.39090	NM_010350	ENSMUSG00000020734	Grin2c	GluN2C|NMDAR2C|NR2C	glutamate receptor, ionotropic, NMDA2C (epsilon 3)	protein-coding	1.0	0.0	7.5	0.0	2.0	2.5
Merged-chr3-96238338-3	chr3	96237848	96238848	+	634.333313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	TTS (NM_178216)	TTS (NM_178216)	779.0	NM_054045	97114.0	Mm.358797	NM_054045	ENSMUSG00000081058	Hist2h3c2	H3-614|H3.2-614|Hist2h3c2-ps|Hist2h3ca1|M32461	histone cluster 2, H3c2	protein-coding	8.0	1.0	1.5	0.0	0.5	3.5
Merged-chr13-33084779-2	chr13	33084279	33085279	+	634.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_173052, intron 1 of 6)	intron (NM_173052, intron 1 of 6)	676.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-76380341-1	chr18	76379841	76380841	+	634.333313	f1_c57bl6.idr	Intergenic	Intergenic	117896.0	NM_001311070	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	2.5	1.0	3.0	0.0	0.0	2.0
Merged-chr8-36549231-3	chr8	36548747	36549747	+	634.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	60056.0	NM_176952	319582.0	Mm.180924	NM_176952	ENSMUSG00000039620	6430573F11Rik	Kiaa1456|TRM9L|Trmt9b	RIKEN cDNA 6430573F11 gene	protein-coding	0.0	1.0	4.5	0.0	2.0	5.0
Merged-chr6-22418492-1	chr6	22417992	22418992	+	634.333313	f0_balb.idr	Intergenic	Intergenic	-62411.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88667531-1	chr8	88667031	88668031	+	634.333313	f1_balb.idr	intron (NM_145857, intron 4 of 12)	intron (NM_145857, intron 4 of 12)	20184.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	27.0	89.0	49.5	22.5	83.0	61.5
Merged-chr9-37346124-2	chr9	37345624	37346624	+	634.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081429, intron 2 of 15)	RMER4B|LTR|ERVK	2268.0	NM_001081429	245902.0	Mm.390150	NM_001081429	ENSMUSG00000034303	Ccdc15	A630039F14Rik|D030074L19	coiled-coil domain containing 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94038005-2	chr8	94037505	94038505	+	634.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026623)	promoter-TSS (NM_026623)	807.0	NM_001093757	270086.0	Mm.251085	NM_177767	ENSMUSG00000033009	Ogfod1	4930415J21Rik|AA387199|AA939912|AW061076|mKIAA1612	2-oxoglutarate and iron-dependent oxygenase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-43396517-2	chr11	43396017	43397017	+	634.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-22056.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87758540-2	chr1	87758032	87759032	+	634.25	f0_balb.idr|f1_balb.idr	intron (NM_029846, intron 1 of 17)	intron (NM_029846, intron 1 of 17)	2521.0	NM_001205392	77040.0	Mm.272972	NM_029846	ENSMUSG00000026289	Atg16l1	1500009K01Rik|Apg16l|Atg16l|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67460998-2	chr7	67460498	67461498	+	634.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88140.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	31.0	49.0	32.0	8.5	56.5	29.5
Merged-chr4-62761838-2	chr4	62761338	62762338	+	634.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87864.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.0	11.0	2.0	5.0	0.0	0.0
Merged-chr7-19021677-2	chr7	19021177	19022177	+	634.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008260, intron 1 of 1)	(T)n|Simple_repeat|Simple_repeat	1862.0	NM_008260	15377.0	Mm.42260	NM_008260	ENSMUSG00000040891	Foxa3	Hnf-3g|Hnf3g|Tcf-3g|Tcf3g	forkhead box A3	protein-coding	5.0	2.5	2.5	0.0	1.5	0.0
Merged-chr11-22800399-2	chr11	22799899	22800899	+	634.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59336.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55802241-2	chr19	55801741	55802741	+	634.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	60431.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146682657-3	chr3	146682165	146683165	+	634.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31348.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25271018-2	chr15	25270518	25271518	+	634.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	142746.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-57977022-2	chr1	57976522	57977522	+	634.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6938.0	NM_001159865	51960.0	Mm.339711	NM_030211	ENSMUSG00000054770	Kctd18	4932411A20Rik|6530404F10Rik	potassium channel tetramerisation domain containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57180659-2	chr16	57180159	57181159	+	634.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 14 of 17)	intron (NM_026254, intron 14 of 17)	-13327.0	NM_023175	52633.0	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-16168998-2	chr3	16168498	16169498	+	634.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER3D-int|LTR|ERVK	-14167.0	NM_001358043	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	1.5	0.0	0.5	1.5	0.0	0.5
Merged-chr9-71834921-4	chr9	71834408	71835408	+	634.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	61188.0	NM_001253864	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120190324-3	chr6	120189792	120190792	+	634.049988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-3531.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-33918995-2	chr3	33918495	33919495	+	634.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74685.0	NM_026222	51938.0	Mm.275710	NM_026222	ENSMUSG00000027676	Ccdc39	4921507O14Rik|AI447426|AI844750|D3Ertd789e|b2b1304Clo|b2b1735Clo|b2b2025.1Clo|prh	coiled-coil domain containing 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124758026-2	chr6	124757526	124758526	+	634.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1539.0	NM_007881	13498.0	Mm.333380	NM_007881	ENSMUSG00000004263	Atn1	Atr1|Drpla|atrophin-1	atrophin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88214108-1	chr4	88213608	88214608	+	634.0	f0_balb.idr	intron (NM_001081184, intron 11 of 43)	RMER15|LTR|ERVL	92068.0	NR_030478	735282.0		NR_030478	ENSMUSG00000070077	Mir491	Mirn491|mir-491|mmu-mir-491	microRNA 491	ncRNA	0.0	0.0	0.0	0.0	6.0	0.0
Merged-chr7-49450680-2	chr7	49450180	49451180	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 6 of 37)	intron (NM_175272, intron 6 of 37)	186155.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54772187-2	chr11	54771687	54772687	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178626, intron 1 of 5)	intron (NM_178626, intron 1 of 5)	15516.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60933950-1	chr10	60933450	60934450	+	634.0	f0_balb.idr	intron (NR_033616, intron 1 of 2)	intron (NR_033616, intron 1 of 2)	4182.0	NR_033616	73616.0	Mm.159038	NR_033616	ENSMUSG00000037247	Pldi	1700125F08Rik|Poldi	polymorphic derived intron containing	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-109049980-2	chr9	109049480	109050480	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357932, intron 2 of 5)	intron (NM_001357932, intron 2 of 5)	-1116.0	NM_001357935	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3835018-1	chr4	3834518	3835518	+	634.0	f0_balb.idr	intron (NM_026147, intron 2 of 3)	intron (NM_026147, intron 2 of 3)	637.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	5.0	25.0	14.0	5.0	6.0	6.5
Merged-chr12-33311883-1	chr12	33311383	33312383	+	634.0	f0_balb.idr	intron (NM_001033436, intron 1 of 7)	intron (NM_001033436, intron 1 of 7)	9368.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30592766-1	chr14	30592266	30593266	+	634.0	f1_c57bl6.idr	Intergenic	RLTR12E|LTR|ERVK	17544.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	61.5	102.0	89.0	51.5	73.5	81.5
Merged-chr10-127124865-2	chr10	127124365	127125365	+	634.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-3705.0	NM_001171026	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69257267-1	chr3	69256767	69257767	+	634.0	f0_balb.idr	Intergenic	Intergenic	34848.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-18949834-2	chr8	18949334	18950334	+	634.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001286469, exon 1 of 7)	5' UTR (NM_001286469, exon 1 of 7)	1037.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	0.0	5.0	0.0	0.0	0.0	0.0
Merged-chr12-31826052-1	chr12	31825552	31826552	+	634.0	f0_balb.idr	intron (NM_001163126, intron 11 of 22)	intron (NM_001163126, intron 11 of 22)	-112126.0	NM_175191	73010.0	Mm.441517	NM_175191	ENSMUSG00000044067	Gpr22	2900068K05Rik|AW061316	G protein-coupled receptor 22	protein-coding	0.0	3.0	1.0	7.5	3.0	2.0
Merged-chr9-119973519-2	chr9	119973019	119974019	+	634.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153287, exon 4 of 5)	exon (NM_153287, exon 4 of 5)	9504.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65695519-2	chr5	65695019	65696019	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081321, intron 2 of 31)	URR1A|DNA|hAT-Charlie	2337.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31435681-2	chr2	31435181	31436181	+	634.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34589.0	NM_007494	11898.0	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3313619-2	chr8	3313091	3314091	+	634.0	f0_balb.idr|f1_balb.idr	Intergenic	RMER10B|LTR|ERVL	-33974.0	NM_001330056	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	3.0	10.0	15.0	6.0	10.0	5.5
Merged-chr11-60509060-2	chr11	60508560	60509560	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_182698, intron 46 of 62)	intron (NM_182698, intron 46 of 62)	-28623.0	NM_172943	268420.0	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123629051-2	chr8	123628551	123629551	+	634.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-24878.0	NM_133955	69581.0	Mm.168257	NM_133955	ENSMUSG00000039960	Rhou	2310026M05Rik|AI182090|Arhu|CDC42L1|G28K|WRCH-1|WRCH1|mG28K	ras homolog family member U	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95712841-1	chr8	95712341	95713341	+	634.0	f1_balb.idr	intron (NM_001195006, intron 14 of 14)	intron (NM_001195006, intron 14 of 14)	-3072.0	NM_001035123	66083.0	Mm.261321	NM_001035123	ENSMUSG00000031671	Setd6	0610039J04Rik|3110004G14Rik|AI413388|C76402	SET domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-74988214-3	chr9	74987723	74988723	+	634.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153584, intron 1 of 11)	intron (NM_153584, intron 1 of 11)	12112.0	NM_153584	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	7.0	0.0	5.5	0.0	6.0	7.0
Merged-chr15-98002216-2	chr15	98001716	98002716	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031163, intron 1 of 53)	CpG	2508.0	NM_031163	12824.0	Mm.2423	NM_031163	ENSMUSG00000022483	Col2a1	Col2|Col2a|Col2a-1|Del1|Dmm|Lpk|Rgsc856	collagen, type II, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53776822-2	chr11	53776322	53777322	+	634.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001159396, exon 10 of 10)	3' UTR (NM_001159396, exon 10 of 10)	6349.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34164568-1	chr17	34164068	34165068	+	634.0	f1_balb.idr	Intergenic	B4A|SINE|B4	11377.0	NM_010387	14999.0	Mm.460938	NM_010387	ENSMUSG00000079547	H2-DMb1	AI385589|H-2Mb1|H2-Mb1	histocompatibility 2, class II, locus Mb1	protein-coding	5.0	26.0	13.5	8.0	48.0	11.5
Merged-chr2-35399507-2	chr2	35399007	35400007	+	634.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001145821)	TTS (NM_001145821)	-2333.0	NM_001272040	74854.0	Mm.159338	NM_001080709	ENSMUSG00000079421	4930402F06Rik	-	RIKEN cDNA 4930402F06 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-115808919-2	chr12	115808419	115809419	+	634.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113125.0	NR_105810	102465205.0		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81573186-2	chr10	81572686	81573686	+	634.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ZP3AR|Satellite|Satellite	-2101.0	NM_019725	21886.0	Mm.38608	NM_019725	ENSMUSG00000034771	Tle2	Grg2|mKIAA4188	transducin-like enhancer of split 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45301285-2	chr19	45300785	45301785	+	634.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62449.0	NM_001360122	12234.0	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	0.0	0.0	1.5	8.5	0.0	0.0
Merged-chr8-70898735-2	chr8	70898235	70899235	+	634.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1292.0	NM_029751	76808.0	Mm.379251	NM_029751	ENSMUSG00000045128	Rpl18a	2510019J09Rik	ribosomal protein L18A	protein-coding	0.0	4.0	2.5	1.5	0.5	3.5
Merged-chr5-125479834-2	chr5	125479334	125480334	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030210, intron 1 of 17)	MIR|SINE|MIR	3961.0	NM_030210	78894.0	Mm.431573	NM_030210	ENSMUSG00000029482	Aacs	2210408B16Rik|SUR5	acetoacetyl-CoA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95346733-2	chr8	95346217	95347217	+	634.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133954, exon 7 of 7)	3' UTR (NM_133954, exon 7 of 7)	-5579.0	NM_008609	17388.0	Mm.217116	NM_008609	ENSMUSG00000031790	Mmp15	AI503551|MT-MMP 2|MT2-MMP	matrix metallopeptidase 15	protein-coding	0.0	0.0	3.0	0.5	1.5	3.0
Merged-chr1-95662836-2	chr1	95662336	95663336	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159745, intron 1 of 3)	intron (NM_001159745, intron 1 of 3)	4758.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-34886066-2	chr4	34885566	34886566	+	634.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-3118.0	NM_013889	30046.0	Mm.38193	NM_013889	ENSMUSG00000039967	Zfp292	5730450D02Rik|5830493J20Rik|9430062L07Rik|AI449016|Krox-10|Zfp-15|Zfp15|Zn-15|Zn-16|mKIAA0530	zinc finger protein 292	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55867225-2	chr14	55866725	55867725	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040072, intron 5 of 7)	intron (NM_001040072, intron 5 of 7)	13110.0	NM_001040072	277154.0	Mm.319347	NM_001040072	ENSMUSG00000075592	Nynrin	AA409373|C80530|mKIAA1305	NYN domain and retroviral integrase containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-29938886-2	chr3	29938386	29939386	+	634.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47869.0	NR_110437	102636083.0		NR_110437	ENSMUSG00000102590	Mannr	Manr	Mecom adjacent non-protein coding RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26909170-2	chr2	26908670	26909670	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033908, intron 1 of 3)	intron (NM_001033908, intron 1 of 3)	1472.0	NM_011513	20933.0	Mm.397932	NM_011513	ENSMUSG00000015776	Med22	AW212655|AW558812|Surf-5|Surf5	mediator complex subunit 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8755940-2	chr12	8755440	8756440	+	634.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-15456.0	NM_011519	20969.0	Mm.2580	NM_011519	ENSMUSG00000020592	Sdc1	AA408134|AA409076|CD138|Sstn|Synd|Synd1|syn-1	syndecan 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111806433-2	chr12	111805933	111806933	+	634.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081959, exon 16 of 16)	3' UTR (NM_001081959, exon 16 of 16)	7446.0	NM_028875	74335.0	Mm.19082	NM_028875	ENSMUSG00000021287	Xrcc3	-	X-ray repair complementing defective repair in Chinese hamster cells 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79219727-2	chr3	79219227	79220227	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045502, intron 1 of 2)	MTA_Mm|LTR|ERVL-MaLR	6808.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	1.5	4.5	0.5	1.0	1.5	0.0
Merged-chr11-101659320-2	chr11	101658820	101659820	+	634.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-6221.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-35361195-2	chr3	35360695	35361695	+	634.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	304968.0	NR_040748	625963.0	Mm.251506	NR_040748	ENSMUSG00000105662	Gm6639	-	predicted gene 6639	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61346898-2	chr10	61346398	61347398	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013753, intron 9 of 19)	intron (NM_013753, intron 9 of 19)	36625.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-61238169-1	chr19	61237669	61238669	+	634.0	f0_balb.idr	Intergenic	Intergenic	-9751.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr6-135174457-1	chr6	135173957	135174957	+	634.0	f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	-6242.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	1.0	0.5	0.0	1.5	9.0	2.5
Merged-chr16-3907132-2	chr16	3906632	3907632	+	634.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028484, exon 2 of 3)	exon (NM_028484, exon 2 of 3)	1521.0	NR_153801	105246059.0		NR_153801		Gm41410	-	predicted gene, 41410	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113114941-2	chr12	113114441	113115441	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346696, intron 2 of 19)	intron (NM_001346696, intron 2 of 19)	16663.0	NM_054081	116870.0	Mm.212577	NM_054081	ENSMUSG00000021144	Mta1	-	metastasis associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7023151-2	chr19	7022651	7023651	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016737, intron 10 of 13)	Lx6|LINE|L1	-3682.0	NM_001362399	108101.0	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80253740-1	chr15	80253240	80254240	+	634.0	f1_c57bl6.idr	TTS (NM_178719)	TTS (NM_178719)	-1444.0	NM_001287180	11911.0	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	8.5	18.0	22.5	10.0	22.5	27.5
Merged-chr8-88105577-2	chr8	88105077	88106077	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151771, intron 2 of 7)	intron (NR_151771, intron 2 of 7)	13030.0	NR_151771	100040328.0	Mm.56398	NR_151771		Gm2716	4933416k23	predicted gene 2716	ncRNA	7.0	3.5	11.0	7.0	5.0	9.0
Merged-chr11-94090719-2	chr11	94090219	94091219	+	634.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001199203, exon 15 of 30)	exon (NM_001199203, exon 15 of 30)	46514.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0.0	2.5	1.0	0.0	2.5	1.0
Merged-chr6-72098893-3	chr6	72098360	72099360	+	634.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	1252.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16293255-2	chr19	16292755	16293755	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 2 of 6)	intron (NM_008139, intron 2 of 6)	21749.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155098885-2	chr2	155098367	155099367	+	634.0	f0_balb.idr|f1_balb.idr	non-coding (NR_040634, exon 3 of 3)	non-coding (NR_040634, exon 3 of 3)	1212.0	NR_040634	100504268.0	Mm.410858	NR_040634	ENSMUSG00000087254	2310005A03Rik	-	RIKEN cDNA 2310005A03 gene	ncRNA	3.0	5.0	4.0	4.5	14.5	15.0
Merged-chr8-95338518-2	chr8	95338018	95339018	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133954, intron 2 of 6)	intron (NM_133954, intron 2 of 6)	6234.0	NM_133954	101985.0	Mm.29069	NM_133954	ENSMUSG00000031792	Usb1	AA960436	U6 snRNA biogenesis 1	protein-coding	4.0	11.5	1.0	0.0	3.5	1.0
Merged-chr15-96476006-2	chr15	96475506	96476506	+	634.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-15163.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94125855-2	chr16	94125355	94126355	+	634.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011377, exon 11 of 11)	exon (NM_011377, exon 11 of 11)	40595.0	NM_011377	20465.0	Mm.4775	NM_011377	ENSMUSG00000062713	Sim2	bHLHe15	single-minded family bHLH transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121369590-2	chr10	121369090	121370090	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 1 of 13)	URR1A|DNA|hAT-Charlie	4500.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60664917-1	chr13	60664417	60665417	+	634.0	f1_balb.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	62706.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	13.0	20.0	8.5	2.0	23.5	9.5
Merged-chr13-91452476-1	chr13	91451976	91452976	+	634.0	f0_balb.idr	Intergenic	Intergenic	-8621.0	NM_024272	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24457807-1	chr7	24457307	24458307	+	634.0	f1_c57bl6.idr	Intergenic	Intergenic	-4676.0	NM_011113	18793.0	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	15.0	1.0	0.0	3.0	0.0	0.0
Merged-chr4-156194672-1	chr4	156194172	156195172	+	634.0	f1_c57bl6.idr	intron (NM_021604, intron 2 of 35)	intron (NM_021604, intron 2 of 35)	2816.0	NM_021604	11603.0	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	4.0	0.0	3.0	0.0	0.0	0.0
Merged-chr19-6294341-2	chr19	6293841	6294841	+	634.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010119, exon 3 of 5)	exon (NM_010119, exon 3 of 5)	-12116.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101970270-2	chr11	101969770	101970770	+	634.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028207)	TTS (NM_028207)	-3255.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74377007-2	chr11	74376507	74377507	+	634.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	12336.0	NM_001011851	258153.0	Mm.376124	NM_001011851	ENSMUSG00000058275	Olfr412	MOR127-5P	olfactory receptor 412	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108855162-2	chr12	108854662	108855662	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001012310, intron 4 of 5)	intron (NM_001012310, intron 4 of 5)	4033.0	NM_001012310	104910.0	Mm.202653	NM_001012310	ENSMUSG00000048856	Slc25a47	AI132487|AI876593|HDMCP	solute carrier family 25, member 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23993089-2	chr17	23992586	23993586	+	634.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133731)	TTS (NM_133731)	5014.0	NM_133731	70835.0	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	4.0	7.5	4.5	1.0	5.5	3.5
Merged-chr1-180877764-2	chr1	180877264	180878264	+	634.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-15344.0	NM_177099	320202.0	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-13048777-2	chr7	13048277	13049277	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290453, intron 5 of 6)	intron (NM_001290453, intron 5 of 6)	5987.0	NM_001290452	109889.0	Mm.10103	NM_145819	ENSMUSG00000030380	Mzf1	Mzf-2|Mzf2|Zfp121|Zfp98|Znf42	myeloid zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27259333-2	chr3	27258833	27259833	+	634.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MuRRS-int|LTR|ERV1	-57744.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73531391-2	chr7	73530891	73531891	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	B3|SINE|B2	10355.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-19973094-3	chr16	19972605	19973605	+	634.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183390, intron 1 of 6)	intron (NM_183390, intron 1 of 6)	9944.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-69587013-2	chr2	69586513	69587513	+	634.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081088)	promoter-TSS (NM_001081088)	-946.0	NM_001081088	14725.0	Mm.23847	NM_001081088	ENSMUSG00000027070	Lrp2	AI315343|AW536255|D230004K18Rik|Gp330|Megalin|b2b1625.2Clo	low density lipoprotein receptor-related protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167574786-2	chr2	167574286	167575286	+	634.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36591.0	NM_011427	20613.0	Mm.2093	NM_011427	ENSMUSG00000042821	Snai1	Sna|Sna1|Snail|Snail1	snail family zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29380606-3	chr7	29380109	29381109	+	634.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081028, intron 9 of 22)	L1ME3Cz|LINE|L1	76604.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-81669770-2	chr12	81669270	81670270	+	634.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	38521.0	NM_001033149	69480.0	Mm.130002	NM_001033149	ENSMUSG00000042734	Ttc9	-	tetratricopeptide repeat domain 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-35147004-3	chr15	35146484	35147484	+	634.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357821, intron 1 of 11)	intron (NM_001357821, intron 1 of 11)	8822.0	NM_001357821	56274.0	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24685079-2	chr10	24684579	24685579	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308329, intron 1 of 24)	intron (NM_001308329, intron 1 of 24)	27080.0	NM_001308327	18605.0	Mm.27254	NM_008813	ENSMUSG00000037370	Enpp1	4833416E15Rik|AI428932|C76301|CD203c|E-NPP 1|E-NPP1|Ly-41|M6S1|NPP1|Npps|PC-1|Pca|Pca-1|Pdnp1|ttw|twy	ectonucleotide pyrophosphatase/phosphodiesterase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165402932-4	chr2	165402461	165403461	+	634.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2567.0	NM_029021	74614.0	Mm.72179	NM_029021	ENSMUSG00000027670	Ocstamp	4833422F24Rik|OC-STAMP	osteoclast stimulatory transmembrane protein	protein-coding	4.0	7.0	18.5	8.5	18.0	24.0
Merged-chr16-41038878-2	chr16	41038378	41039378	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361281, intron 2 of 8)	Lx2|LINE|L1	-493948.0	NM_001347236	268890.0	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Gm29907|Lam|Lamp	limbic system-associated membrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-56108853-2	chr10	56108353	56109353	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163833, intron 1 of 1)	MTEa|LTR|ERVL-MaLR	1936.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70704698-3	chr8	70704201	70705201	+	633.966675	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6962.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	1.0	2.5	5.5	1.5	4.5	0.5
Merged-chr3-55152235-3	chr3	55151731	55152731	+	633.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177203, intron 4 of 7)	intron (NM_177203, intron 4 of 7)	9990.0	NR_110781	320604.0	Mm.213909	NM_177203	ENSMUSG00000048655	Ccdc169	A730037C10Rik	coiled-coil domain containing 169	protein-coding	2.0	3.5	1.0	2.0	0.0	0.0
Merged-chr7-16193949-2	chr7	16193443	16194443	+	633.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	18548.0	NR_102730	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	12.5	8.0	19.0	2.0	14.5	1.5
Merged-chr1-38989317-3	chr1	38988816	38989816	+	633.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026850, intron 1 of 5)	MTC|LTR|ERVL-MaLR	1502.0	NM_026850	68833.0	Mm.28121	NM_026850	ENSMUSG00000026078	Pdcl3	1110061A19Rik|C80025|Viaf1	phosducin-like 3	protein-coding	4.5	16.5	9.5	13.5	24.0	16.0
Merged-chr12-102422043-2	chr12	102421543	102422543	+	633.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 2 of 13)	B4|SINE|B4	17770.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	5.0	5.0	4.5	1.5	10.5	5.0
Merged-chr2-156253040-2	chr2	156252526	156253526	+	633.833374	f0_c57.idr|f1_c57bl6.idr	intron (NM_172674, intron 3 of 17)	intron (NM_172674, intron 3 of 17)	56379.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	4.5	33.5	13.0	16.0	3.5	3.5
Merged-chr7-88252831-3	chr7	88252352	88253352	+	633.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-25233.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34724812-4	chr19	34724321	34725321	+	633.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172838, intron 1 of 6)	intron (NM_172838, intron 1 of 6)	22290.0	NM_172838	240638.0	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	9.0	5.5	8.5	4.0	5.0	9.5
Merged-chr4-123977117-3	chr4	123976615	123977615	+	633.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	59682.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	0.0	0.5	0.5	0.0	0.5	0.5
Merged-chr11-12291619-2	chr11	12291101	12292101	+	633.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282993, intron 8 of 13)	intron (NM_001282993, intron 8 of 13)	120539.0	NM_001282994	12808.0	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding	1.5	3.0	3.5	0.5	0.5	3.5
Merged-chr1-40045983-2	chr1	40045483	40046483	+	633.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38731.0	NM_010555	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119545501-2	chr11	119545001	119546001	+	633.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008730, intron 2 of 4)	intron (NM_008730, intron 2 of 4)	2319.0	NM_008730	18164.0	Mm.5142	NM_008730	ENSMUSG00000025582	Nptx1	D11Bwg1004e|Np1	neuronal pentraxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76537186-2	chr15	76536686	76537686	+	633.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_013909, exon 5 of 9)	exon (NM_013909, exon 5 of 9)	1560.0	NM_013909	30840.0	Mm.275279	NM_013909	ENSMUSG00000022559	Fbxl6	AU021795|Fbl6	F-box and leucine-rich repeat protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63930221-3	chr9	63929741	63930741	+	633.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	91818.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35774084-2	chr17	35773584	35774584	+	633.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_045459, intron 1 of 2)	intron (NR_045459, intron 1 of 2)	1634.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	3.0	2.5	2.0	0.0	2.5	2.5
Merged-chr7-100862075-3	chr7	100861582	100862582	+	633.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177073, intron 1 of 10)	intron (NM_177073, intron 1 of 10)	1331.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-61393743-3	chr3	61393249	61394249	+	633.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29242.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-105553735-2	chr9	105553235	105554235	+	633.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32478.0	NM_001253831	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	0.0	2.0	5.0	1.0	0.0	2.5
Merged-chr11-51923079-2	chr11	51922579	51923579	+	633.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44552.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-77202116-3	chr2	77201627	77202627	+	633.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175465, intron 10 of 17)	intron (NM_175465, intron 10 of 17)	-31492.0	NM_001025576	545428.0	Mm.26579	NM_001025576	ENSMUSG00000044033	Ccdc141	2610301F02Rik|CAMDI	coiled-coil domain containing 141	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-111444991-3	chr11	111444501	111445501	+	633.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	378837.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26238113-3	chr2	26237616	26238616	+	633.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302956)	promoter-TSS (NM_001302956)	-717.0	NM_001302956	227638.0	Mm.116769	NM_153559	ENSMUSG00000036327	Qsox2	BC030934|Qscn6l1|Soxn	quiescin Q6 sulfhydryl oxidase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117260332-2	chr8	117259832	117260832	+	633.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	3313.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.5	1.0	3.0	2.5	3.5	1.5
Merged-chr3-138492503-3	chr3	138491987	138492987	+	633.644409	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-3105.0	NM_175224	75624.0	Mm.26833	NM_175224	ENSMUSG00000005813	Metap1	1700029C17Rik|AW047992|mKIAA0094	methionyl aminopeptidase 1	protein-coding	6.5	5.5	0.0	0.0	1.5	2.5
Merged-chr15-91251762-3	chr15	91251276	91252276	+	633.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-59769.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45465233-2	chr4	45464744	45465744	+	633.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 2 of 5)	intron (NM_001033306, intron 2 of 5)	-56478.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	0.0	0.0	2.0	2.0	0.5	1.5
Merged-chr6-113331807-2	chr6	113331307	113332307	+	633.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_149720, exon 4 of 7)	non-coding (NR_149720, exon 4 of 7)	4831.0	NM_010957	18294.0	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-130800994-2	chr3	130800494	130801494	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70596.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125000209-2	chr6	124999709	125000709	+	633.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145926, intron 3 of 5)	B2_Mm1a|SINE|B2	1599.0	NM_001145926	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21289220-2	chr9	21288720	21289720	+	633.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009878, exon 2 of 2)	exon (NM_009878, exon 2 of 2)	-1251.0	NM_145416	215194.0	Mm.290690	NM_145416	ENSMUSG00000035047	Kri1	-	KRI1 homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3308624-4	chr12	3308111	3309111	+	633.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 1 of 5)	intron (NM_016676, intron 1 of 5)	1358.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-183442293-1	chr1	183441793	183442793	+	633.5	f0_balb.idr	Intergenic	Intergenic	23045.0	NM_001308052	78772.0	Mm.29003	NM_030175	ENSMUSG00000053461	Hhipl2	4930507C10Rik|AW208802|Hhip3	hedgehog interacting protein-like 2	protein-coding	1.0	0.5	1.0	1.0	7.0	0.0
Merged-chr2-156373349-2	chr2	156372823	156373823	+	633.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027585, intron 11 of 12)	intron (NM_027585, intron 11 of 12)	19656.0	NR_024329	347740.0	Mm.324242	NR_024329	ENSMUSG00000102869	2900097C17Rik	1810005K14Rik|4930563C06Rik	RIKEN cDNA 2900097C17 gene	ncRNA	0.0	5.5	0.0	0.0	2.5	0.5
Merged-chr5-118004863-2	chr5	118004363	118005363	+	633.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346588, intron 11 of 11)	intron (NM_001346588, intron 11 of 11)	-22880.0	NR_151582	57816.0	Mm.273285	NM_021344	ENSMUSG00000029359	Tesc	1010001A17Rik|2410011K10Rik|TE-1	tescalcin	protein-coding	1.5	0.0	5.5	2.0	0.0	2.5
Merged-chr9-59293777-3	chr9	59293241	59294241	+	633.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359282, intron 1 of 6)	intron (NM_001359282, intron 1 of 6)	2169.0	NM_028121	72141.0	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79565961-1	chr3	79565461	79566461	+	633.5	f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	1718.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	1.5	5.0	1.0	0.0	2.5	0.5
Merged-chr14-99833159-2	chr14	99832659	99833659	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	316637.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-56690861-1	chr10	56690361	56691361	+	633.5	f0_balb.idr	Intergenic	T-rich|Low_complexity|Low_complexity	258880.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94875937-2	chr8	94875437	94876437	+	633.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053246, intron 1 of 8)	intron (NM_053246, intron 1 of 8)	375.0	NM_053246	114255.0	Mm.203949	NM_053246	ENSMUSG00000040631	Dok4	-	docking protein 4	protein-coding	0.0	0.0	0.0	1.5	0.0	0.0
Merged-chr4-155700080-2	chr4	155699580	155700580	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4735.0	NM_026899	68991.0	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117287551-2	chr8	117287051	117288051	+	633.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	30532.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10742762-2	chr19	10742262	10743262	+	633.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_027805, intron 1 of 3)	intron (NR_027805, intron 1 of 3)	1815.0	NR_027805	403202.0	Mm.34482	NM_207529	ENSMUSG00000067577	A430093F15Rik	Gm674	RIKEN cDNA A430093F15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53183928-2	chr4	53183428	53184428	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24033.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50567057-2	chr9	50566557	50567557	+	633.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008360, intron 3 of 7)	B1_Mur2|SINE|Alu	-5789.0	NM_025687	66654.0	Mm.442255	NM_025687	ENSMUSG00000032065	Tex12	5730518K06Rik	testis expressed gene 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10396727-2	chr17	10396227	10397227	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59489.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123545813-1	chr4	123545313	123546313	+	633.5	f0_balb.idr	intron (NM_001199137, intron 2 of 92)	intron (NM_001199137, intron 2 of 92)	-70607.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-73133654-2	chr11	73133142	73134142	+	633.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361245, intron 24 of 30)	intron (NM_001361245, intron 24 of 30)	4652.0	NM_010353	14841.0	Mm.42045	NM_010353	ENSMUSG00000050107	Haspin	Gsg2	histone H3 associated protein kinase	protein-coding	19.0	25.5	21.0	14.5	42.0	10.0
Merged-chr16-45676685-2	chr16	45676185	45677185	+	633.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172455, intron 9 of 17)	L2a|LINE|L2	16973.0	NM_172455	208171.0	Mm.186306	NM_172455	ENSMUSG00000033177	Tmprss7	B230219I23Rik|Gm1748	transmembrane serine protease 7	protein-coding	0.0	0.0	1.5	0.0	0.5	0.0
Merged-chr8-27186122-2	chr8	27185622	27186622	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-11476.0	NM_001080813	75767.0	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-75751064-2	chr3	75750564	75751564	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95333.0	NR_040539	69193.0	Mm.374088	NR_040539	ENSMUSG00000099370	Platr10	2410007B07Rik	pluripotency associated transcript 10	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112734126-2	chr13	112733626	112734626	+	633.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178746, exon 15 of 15)	3' UTR (NM_178746, exon 15 of 15)	-66651.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139337217-2	chr5	139336717	139337717	+	633.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_197980)	TTS (NM_197980)	7949.0	NM_197980	68033.0	Mm.261064	NM_197980	ENSMUSG00000045438	Cox19	1810074D02Rik|2810437L13Rik	cytochrome c oxidase assembly protein 19	protein-coding	7.5	12.0	14.0	0.0	0.0	1.0
Merged-chr5-123371264-2	chr5	123370764	123371764	+	633.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029850, exon 6 of 6)	3' UTR (NM_029850, exon 6 of 6)	-23534.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12837345-2	chr13	12836845	12837845	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-37266.0	NM_011118	18812.0	Mm.457984	NM_011118	ENSMUSG00000056457	Prl2c3	Ghd1|MRP-2|MRP-3|Mrpplf3|PLF-2|PLF-3|Plf2|Prl2c4|mrp/plf3	prolactin family 2, subfamily c, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34602586-3	chr1	34602065	34603065	+	633.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22872.0	NM_213727	211383.0	Mm.330696	NM_213727	ENSMUSG00000045174	Amer3	9430069J07Rik|Fam123c	APC membrane recruitment 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112714053-2	chr12	112713553	112714553	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8121.0	NM_001024602	217882.0	Mm.23689	NM_001024602	ENSMUSG00000072825	Cep170b	AI466840|AW555464|Kiaa0284|mKIAA0284	centrosomal protein 170B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13591133-2	chr8	13590633	13591633	+	633.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 8 of 23)	intron (NM_009025, intron 8 of 23)	-28672.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118704070-2	chr2	118703570	118704570	+	633.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081971)	promoter-TSS (NM_001081971)	-107.0	NM_001081971	383787.0	Mm.35758	NM_001081971	ENSMUSG00000078137	Ankrd63	Gm1337	ankyrin repeat domain 63	protein-coding	0.0	5.5	1.0	2.0	0.0	0.0
Merged-chr2-84592483-2	chr2	84591915	84592915	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57065.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	1.5	1.0	1.0	1.0	3.5	1.5
Merged-chr9-83549893-2	chr9	83549393	83550393	+	633.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	1555.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	2.0	1.0	2.0	2.0	0.5	1.5
Merged-chr13-80744425-2	chr13	80743925	80744925	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138959.0	NR_153410	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72000226-2	chr6	71999726	72000726	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42302.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116590799-2	chr11	116590299	116591299	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2888.0	NR_033223	11298.0	Mm.42233	NM_009591	ENSMUSG00000020804	Aanat	AA-NAT|Nat-2|Nat4|Snat	arylalkylamine N-acetyltransferase	protein-coding	0.0	5.5	0.0	0.0	0.0	0.0
Merged-chr19-17737812-2	chr19	17737312	17738312	+	633.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163144, intron 3 of 20)	Lx4A|LINE|L1	99820.0	NM_001163144	18552.0	Mm.3401	NM_001163144	ENSMUSG00000024713	Pcsk5	PC5|PC6|SPC6|b2b1549Clo|b2b585Clo	proprotein convertase subtilisin/kexin type 5	protein-coding	0.0	0.0	3.5	0.0	1.0	1.0
Merged-chr7-45868903-2	chr7	45868403	45869403	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2222.0	NM_008172	14814.0	Mm.322594	NM_008172	ENSMUSG00000002771	Grin2d	GluN2D|NMDAR2D|NR2D	glutamate receptor, ionotropic, NMDA2D (epsilon 4)	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr16-32689681-2	chr16	32689181	32690181	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16527.0	NM_001289443	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0.0	0.5	0.0	0.0	0.5	0.0
Merged-chr13-21707687-2	chr13	21707187	21708187	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4684.0	NM_001011820	258067.0	Mm.453831	NM_001011820	ENSMUSG00000108674	Olfr1359	MOR256-35|MOR256-60	olfactory receptor 1359	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-80803918-2	chr8	80803418	80804418	+	633.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021356, intron 1 of 9)	intron (NM_021356, intron 1 of 9)	-64459.0	NM_053124	93762.0	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-110077493-2	chr10	110076993	110077993	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-77274.0	NM_001081035	260315.0	Mm.225050	NM_177797	ENSMUSG00000020181	Nav3	4732483H20Rik|9630020C08Rik|POMFIL1|Pomfil1p|mKIAA0938|unc53H3	neuron navigator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86806579-2	chr6	86806078	86807078	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12994.0	NM_013471	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	7.0	0.0	1.5	0.0	5.5	3.0
Merged-chr11-84878820-2	chr11	84878320	84879320	+	633.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077636, intron 1 of 1)	intron (NM_001077636, intron 1 of 1)	1375.0	NM_027388	70325.0	Mm.390414	NM_027388	ENSMUSG00000045140	Pigw	2610044A17Rik|Gwt1	phosphatidylinositol glycan anchor biosynthesis, class W	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26645552-2	chr17	26645052	26646052	+	633.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 9 of 9)	intron (NM_026170, intron 9 of 9)	-30844.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-37067763-2	chr6	37067263	37068263	+	633.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 6 of 32)	intron (NM_001347104, intron 6 of 32)	232213.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88344340-1	chr17	88343840	88344840	+	633.5	f0_balb.idr	Intergenic	Intergenic	-96364.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	0.0	1.0	0.0	0.0	7.0	4.0
Merged-chr19-9951690-2	chr19	9951190	9952190	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MURVY-LTR|LTR|ERV1	-28910.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106781931-2	chr11	106781431	106782431	+	633.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_037224)	TTS (NR_037224)	828.0	NR_037224	100526469.0		NR_037224	ENSMUSG00000093273	Mir3064	mir-3064|mmu-mir-3064	microRNA 3064	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120766478-3	chr9	120765984	120766984	+	633.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	148766.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72166966-2	chr5	72166466	72167466	+	633.458374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178599, intron 1 of 4)	intron (NM_178599, intron 1 of 4)	1223.0	NM_001356611	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6162894-3	chr2	6162361	6163361	+	633.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29978.0	NR_033471	100038358.0	Mm.353975	NR_033470	ENSMUSG00000102887	Gm10857	AU015850	predicted gene 10857	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191852082-2	chr1	191851582	191852582	+	633.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30609.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	0.0	8.0	5.5	0.5	10.0	3.5
Merged-chr12-80345053-2	chr12	80344553	80345553	+	633.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177267, intron 8 of 8)	intron (NM_177267, intron 8 of 8)	46624.0	NR_037207	100526530.0		NR_037207	ENSMUSG00000105972	Mir1843a	Mir1843|mir-1843a|mmu-mir-1843|mmu-mir-1843a	microRNA 1843a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22138741-2	chr9	22138241	22139241	+	633.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2995.0	NM_001102405	11433.0	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116418720-3	chr11	116418222	116419222	+	633.333313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5690.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	7.0	20.5	13.0	20.0	7.5	13.0
Merged-chr9-60848975-3	chr9	60848445	60849445	+	633.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357408, intron 4 of 19)	intron (NM_001357408, intron 4 of 19)	54503.0	NM_001357407	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-117902491-3	chr9	117901980	117902980	+	633.333313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138042.0	NM_001286507	27215.0	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	2.0	11.0	2.5	3.5	6.5	5.0
Merged-chr8-95534133-3	chr8	95533628	95534628	+	633.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172914)	promoter-TSS (NM_172914)	28.0	NM_172914	244608.0	Mm.248902	NM_172914	ENSMUSG00000036598	Ccdc113	4933409I22|BC060957	coiled-coil domain containing 113	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128735176-2	chr4	128734676	128735676	+	633.266663	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195083, intron 1 of 6)	intron (NM_001195083, intron 1 of 6)	7605.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0.0	2.0	3.0	1.5	2.0	5.0
Merged-chr14-117709863-2	chr14	117709410	117710410	+	633.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011821, intron 4 of 8)	intron (NM_011821, intron 4 of 8)	243937.0	NR_105747	102465148.0		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	15.5	0.0	0.5	4.0	2.5	0.0
Merged-chr17-34345662-1	chr17	34345162	34346162	+	633.200012	f1_balb.idr	Intergenic	Intergenic	-1017.0	NM_010381	100504404.0	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	0.0	14.0	0.5	48.5	205.5	71.5
Merged-chr6-56833062-3	chr6	56832519	56833519	+	633.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012056, intron 1 of 9)	intron (NM_012056, intron 1 of 9)	960.0	NM_012056	27055.0	Mm.20943	NM_012056	ENSMUSG00000029781	Fkbp9	1810014L23|AW549641|FKBP-63|FKBP-9|FKBP60|FKBP63|FKBP65RS	FK506 binding protein 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145347182-3	chr6	145346697	145347697	+	633.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-40428.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	0.0	0.5	1.0	2.5	4.0	7.0
Merged-chr19-6502177-3	chr19	6501685	6502685	+	633.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 17 of 22)	intron (NM_001205234, intron 17 of 22)	40885.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85943863-2	chr12	85943363	85944363	+	633.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 28 of 32)	intron (NM_001347395, intron 28 of 32)	118913.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-82794709-2	chr1	82794209	82795209	+	633.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26253.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152780021-2	chr2	152779521	152780521	+	633.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001289717)	TTS (NM_001289717)	25848.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65353770-2	chr3	65353270	65354270	+	633.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357358, intron 8 of 13)	intron (NM_001357358, intron 8 of 13)	-4341.0	NR_040390	319798.0	Mm.445698	NR_040390		A730090N16Rik	-	RIKEN cDNA A730090N16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43558077-2	chr4	43557577	43558577	+	633.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_011602, intron 1 of 56)	intron (NM_011602, intron 1 of 56)	4506.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	0.0	1.0	5.5	4.0	0.5	6.0
Merged-chr8-75097009-4	chr8	75096520	75097520	+	633.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010442, exon 3 of 5)	exon (NM_010442, exon 3 of 5)	3402.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-77252251-4	chr5	77251686	77252686	+	633.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13308.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-74936464-2	chr14	74935964	74936964	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	B1F|SINE|Alu	11413.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30184829-1	chr7	30184329	30185329	+	633.0	f1_balb.idr	intron (NM_009944, intron 1 of 3)	PB1D10|SINE|Alu	658.0	NM_009944	12865.0	Mm.423030	NM_009944	ENSMUSG00000074218	Cox7a1	COX7A|COX7AH|COX7AM	cytochrome c oxidase subunit VIIa 1	protein-coding	37.0	76.5	38.0	23.5	92.0	36.5
Merged-chr8-70357667-2	chr8	70357166	70358166	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-4387.0	NM_001122829	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	5.0	2.0	9.5	2.0	2.0	2.0
Merged-chr19-16129612-2	chr19	16129112	16130112	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3219.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153530051-2	chr2	153529551	153530551	+	633.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134300)	promoter-TSS (NM_001134300)	-80.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102057575-1	chr2	102057075	102058075	+	633.0	f0_balb.idr	intron (NM_178886, intron 4 of 5)	intron (NM_178886, intron 4 of 5)	128885.0	NM_178886	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	4.0	0.0	3.0	0.0	0.5	0.0
Merged-chr9-101614582-2	chr9	101614082	101615082	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	272388.0	NR_110509	102633035.0	Mm.411422	NR_110509	ENSMUSG00000101941	Gm28979	-	predicted gene 28979	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124659644-2	chr2	124659144	124660144	+	633.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172537, exon 14 of 17)	exon (NM_172537, exon 14 of 17)	6063.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101929955-2	chr5	101929455	101930455	+	633.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172882, exon 17 of 67)	exon (NM_172882, exon 17 of 67)	139966.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-17538451-3	chr11	17537965	17538965	+	633.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	280777.0	NM_001330649	57316.0	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110961819-3	chr11	110961307	110962307	+	633.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6226.0	NM_010604	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	10.0	7.0	3.5	8.0	8.5	14.0
Merged-chr7-98202408-2	chr7	98201908	98202908	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2933.0	NM_001081167	272411.0	Mm.98333	NM_001081167	ENSMUSG00000074004	B3gnt6	BC039789|Core-3|Core3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63459923-1	chr14	63459423	63460423	+	633.0	f1_c57bl6.idr	intron (NM_177628, intron 3 of 3)	intron (NM_177628, intron 3 of 3)	23529.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	0.0	9.0	6.0	0.0	1.0	5.0
Merged-chr3-148808035-2	chr3	148807535	148808535	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146600.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31164961-2	chr6	31164461	31165461	+	633.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_110469)	TTS (NR_110469)	53513.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58346606-1	chr15	58346106	58347106	+	633.0	f1_c57bl6.idr	intron (NM_027211, intron 7 of 8)	intron (NM_027211, intron 7 of 8)	-22437.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	7.0	4.5	4.0	0.0	9.5	14.5
Merged-chr15-59077345-3	chr15	59076834	59077834	+	633.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 1 of 14)	intron (NM_144800, intron 1 of 14)	4692.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34621087-2	chr6	34620607	34621607	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 1 of 13)	HAL1|LINE|L1	22603.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	53.0	27.5	41.5	50.5	52.5	78.0
Merged-chr1-131098488-1	chr1	131097988	131098988	+	633.0	f1_balb.idr	promoter-TSS (NM_008551)	promoter-TSS (NM_008551)	-645.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	49.0	73.0	46.0	19.5	35.0	33.0
Merged-chr5-143054803-2	chr5	143054303	143055303	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	ID_B1|SINE|B4	58217.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-35530269-2	chr6	35529769	35530769	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008098, intron 1 of 3)	MER58A|DNA|hAT-Charlie	9619.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72440531-1	chr6	72440031	72441031	+	633.0	f0_balb.idr	promoter-TSS (NM_145569)	promoter-TSS (NM_145569)	-973.0	NM_145569	232087.0	Mm.29815	NM_145569	ENSMUSG00000053907	Mat2a	D630045P18Rik	methionine adenosyltransferase II, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135884447-2	chr4	135883947	135884947	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10601.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	0.0	0.0	1.5	0.0	5.0	1.0
Merged-chr10-93078628-2	chr10	93078080	93079080	+	633.0	f0_balb.idr|f0_c57.idr	intron (NM_001347060, intron 1 of 67)	intron (NM_001347060, intron 1 of 67)	3016.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	8.5	31.0	8.5	0.0	23.0	10.5
Merged-chr8-123022896-3	chr8	123022397	123023397	+	633.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	19387.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	11.5	2.5	2.5	0.0	8.5	3.0
Merged-chr2-25423749-2	chr2	25423249	25424249	+	633.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013524)	promoter-TSS (NM_013524)	55.0	NM_001177367	14347.0	Mm.1203	NM_013524	ENSMUSG00000036587	Fut7	AI853193|FTVII|Fuc-TVII|FucT-VII	fucosyltransferase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-35074264-2	chr13	35073764	35074764	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-80120.0	NM_001110331	23986.0	Mm.491141	NM_011868	ENSMUSG00000021417	Eci2	Acbd2|Drs1|Hca88|Peci	enoyl-Coenzyme A delta isomerase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120580137-2	chr6	120579637	120580637	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25341.0	NR_045733	73505.0	Mm.416867	NR_045733		1700072O05Rik	-	RIKEN cDNA 1700072O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122022527-2	chr3	122022027	122023027	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-21933.0	NM_007378	11304.0	Mm.3918	NM_007378	ENSMUSG00000028125	Abca4	AW050280|Abc10|Abcr|D430003I15Rik|RmP	ATP-binding cassette, sub-family A (ABC1), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122725743-2	chr2	122725243	122726243	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-12762.0	NM_019788	18457.0	Mm.268921	NM_019788	ENSMUSG00000005804	Bloc1s6	BLOC-1|Pldn|Stx13bp1|pa	biogenesis of lysosomal organelles complex-1, subunit 6, pallidin	protein-coding	1.0	0.0	0.5	0.5	2.0	2.0
Merged-chr4-147579523-2	chr4	147579023	147580023	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001014397, intron 4 of 5)	RLTR45|LTR|ERVK	26246.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117149509-1	chr5	117149009	117150009	+	633.0	f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	15921.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	10.0	43.5	19.0	0.0	13.0	10.0
Merged-chr11-85184274-2	chr11	85183774	85184774	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13178.0	NM_028589	73634.0	Mm.48850	NM_028589	ENSMUSG00000018479	1700125H20Rik	-	RIKEN cDNA 1700125H20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-46850349-2	chr1	46849849	46850849	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356416, intron 1 of 10)	intron (NM_001356416, intron 1 of 10)	3269.0	NM_001356416	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120833192-2	chr14	120832692	120833692	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-78002.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-39718433-1	chr7	39717933	39718933	+	633.0	f1_balb.idr	Intergenic	Intergenic	200667.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	0.0	0.0	3.5	0.0	0.0	0.5
Merged-chr16-90458862-2	chr16	90458362	90459362	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015755, intron 4 of 10)	intron (NM_015755, intron 4 of 10)	72465.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142440409-2	chr7	142439909	142440909	+	633.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001285858)	TTS (NM_001285858)	-2059.0	NM_009405	21953.0	Mm.39469	NM_009405	ENSMUSG00000031097	Tnni2	-	troponin I, skeletal, fast 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-43542049-1	chr6	43541549	43542549	+	633.0	f0_balb.idr	intron (NM_013861, intron 4 of 8)	intron (NM_013861, intron 4 of 8)	99620.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44116228-2	chr19	44115728	44116728	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081077, intron 10 of 13)	intron (NM_001081077, intron 10 of 13)	-8751.0	NM_001162410	12675.0	Mm.3996	NM_007700	ENSMUSG00000025199	Chuk	AI256658|Chuk1|Fbx24|Fbxo24|IKBKA|IKK alpha|IKK1|Ikka|NFKBIKA	conserved helix-loop-helix ubiquitous kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59811581-1	chr11	59811081	59812081	+	633.0	f0_balb.idr	intron (NR_045686, intron 1 of 1)	intron (NR_045686, intron 1 of 1)	1501.0	NR_045686	100504104.0	Mm.391737	NR_045686	ENSMUSG00000087249	Gm16062	-	predicted gene 16062	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-51072694-1	chr2	51072194	51073194	+	633.0	f0_balb.idr	Intergenic	Intergenic	76417.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-3485322-1	chr6	3484822	3485822	+	633.0	f1_c57bl6.idr	intron (NM_178899, intron 2 of 9)	intron (NM_178899, intron 2 of 9)	9176.0	NM_178899	101202.0	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	1.5	1.5	1.0	1.5	0.0	1.0
Merged-chr10-80839661-2	chr10	80839161	80840161	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013758, intron 1 of 1)	ZP3AR|Satellite|Satellite	4137.0	NM_001359746	237403.0	Mm.40213	NM_001013758	ENSMUSG00000051067	Lingo3	AI851712|LERN2	leucine rich repeat and Ig domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129260271-2	chr6	129259771	129260771	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15098.0	NM_001033122	12515.0	Mm.74745	NM_001033122	ENSMUSG00000030156	Cd69	5830438K24Rik|AI452015|AIM|VEA	CD69 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25223087-2	chr7	25222587	25223587	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175436, intron 1 of 2)	B1_Mur4|SINE|Alu	1662.0	NM_175436	210172.0	Mm.129371	NM_175436	ENSMUSG00000046541	Zfp526	D030024H03Rik|Znf526	zinc finger protein 526	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102568876-2	chr14	102568376	102569376	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	413756.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-24050059-2	chr11	24049559	24050559	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27997.0	NM_016707	14025.0	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-127148913-2	chr6	127148413	127149413	+	633.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040274)	promoter-TSS (NR_040274)	-476.0	NR_040274	77558.0	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	3.0	2.0	1.0	2.0	0.0	0.0
Merged-chr3-135424482-2	chr3	135423982	135424982	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1049.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117799738-2	chr10	117799238	117800238	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-7033.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27031326-1	chr14	27030826	27031826	+	633.0	f1_balb.idr	Intergenic	B3|SINE|B2	-7675.0	NM_134437	171463.0	Mm.206726	NM_027265	ENSMUSG00000040717	Il17rd	2810004A10Rik|AI428510|Sef|Sef-S	interleukin 17 receptor D	protein-coding	0.0	7.0	3.0	1.0	0.0	6.5
Merged-chr8-83714285-1	chr8	83713785	83714785	+	633.0	f1_c57bl6.idr	promoter-TSS (NM_197982)	promoter-TSS (NM_197982)	-892.0	NM_197982	68278.0	Mm.28222	NM_197982	ENSMUSG00000005481	Ddx39	2610307C23Rik|BAT1|DDXL|Ddx39a|URH49	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	protein-coding	0.0	0.0	2.5	0.5	3.0	2.5
Merged-chr3-63919792-2	chr3	63919292	63920292	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177856, intron 4 of 4)	intron (NM_177856, intron 4 of 4)	9006.0	NM_001357824	329659.0	Mm.39342	NM_177856	ENSMUSG00000048581	E130311K13Rik	-	RIKEN cDNA E130311K13 gene	protein-coding	4.0	0.0	1.5	0.0	0.5	0.0
Merged-chr1-79668681-2	chr1	79668181	79669181	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183027, intron 1 of 4)	intron (NM_183027, intron 1 of 4)	3291.0	NM_183027	252903.0	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72412378-1	chr8	72411878	72412878	+	633.0	f1_balb.idr	intron (NM_001122832, intron 1 of 15)	intron (NM_001122832, intron 1 of 15)	9096.0	NM_001122832	13859.0	Mm.288894	NM_007944	ENSMUSG00000006276	Eps15l1	9830147J04Rik|AI593686|Eps15-rs|Eps15R	epidermal growth factor receptor pathway substrate 15-like 1	protein-coding	0.0	7.0	8.5	14.0	0.5	5.5
Merged-chr11-76477784-1	chr11	76477284	76478284	+	633.0	f1_balb.idr	intron (NM_001346670, intron 3 of 21)	intron (NM_001346670, intron 3 of 21)	-9319.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	5.5	2.0	5.0	10.0	21.5	5.5
Merged-chr14-13960190-1	chr14	13959690	13960690	+	633.0	f0_balb.idr	intron (NM_001359900, intron 1 of 8)	RSINE1|SINE|B4	1123.0	NM_001285780	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118346787-2	chr11	118346287	118347287	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011594, intron 1 of 4)	intron (NM_011594, intron 1 of 4)	-4253.0	NM_021440	58251.0	Mm.439815	NM_021440	ENSMUSG00000076433	Cep295nl	Ddc8|FS39|Kiaa1731nl	CEP295 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-69199121-2	chr17	69198621	69199621	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	39765.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	6.5	12.5	19.0	4.5	4.5	9.0
Merged-chr2-34903377-2	chr2	34902877	34903877	+	633.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028716, exon 8 of 15)	exon (NM_028716, exon 8 of 15)	10599.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94413640-2	chr11	94413140	94414140	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009783, intron 33 of 35)	intron (NM_009783, intron 33 of 35)	-20664.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	1.0	0.5	1.0	1.0	0.5	1.0
Merged-chr15-66271661-1	chr15	66271161	66272161	+	633.0	f1_c57bl6.idr	intron (NM_152923, intron 1 of 14)	intron (NM_152923, intron 1 of 14)	14563.0	NM_152923	110862.0	Mm.255585	NM_152923	ENSMUSG00000056258	Kcnq3	-	potassium voltage-gated channel, subfamily Q, member 3	protein-coding	3.0	0.0	2.5	0.5	5.5	6.5
Merged-chr14-63138410-2	chr14	63137910	63138910	+	633.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007798, exon 7 of 10)	exon (NM_007798, exon 7 of 10)	15948.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126909584-1	chr8	126909084	126910084	+	633.0	f0_balb.idr	Intergenic	Intergenic	36337.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-58928341-2	chr2	58927841	58928841	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 10 of 13)	MLT1E3|LTR|ERVL-MaLR	173157.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55251340-2	chr19	55250840	55251840	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2029.0	NM_027976	433256.0	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5705169-4	chr13	5704666	5705666	+	633.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	152926.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111131897-3	chr10	111131395	111132395	+	633.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID2|SINE|ID	-32907.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-36826352-1	chr8	36825852	36826852	+	633.0	f0_balb.idr	intron (NM_001194940, intron 4 of 17)	MTD|LTR|ERVL-MaLR	-93298.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	4.5	7.0	5.5	5.5	17.5	7.5
Merged-chr9-91668243-2	chr9	91667743	91668743	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	299271.0	NM_009576	22774.0	Mm.8062	NM_009576	ENSMUSG00000036972	Zic4	-	zinc finger protein of the cerebellum 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-97435663-2	chr13	97435163	97436163	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110432, intron 1 of 1)	intron (NR_110432, intron 1 of 1)	693.0	NR_110432	100039691.0	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55458513-2	chr14	55458013	55459013	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20245.0	NM_001037938	28200.0	Mm.27427	NM_030686	ENSMUSG00000022210	Dhrs4	AI043103|AI790593|CR|D14Ucla2|NDRD|PHCR|PSCD|RRD|mouNRDR	dehydrogenase/reductase (SDR family) member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-127238200-1	chr6	127237700	127238700	+	633.0	f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	69767.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-105447907-3	chr11	105447421	105448421	+	633.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039242, intron 3 of 5)	intron (NM_001039242, intron 3 of 5)	8814.0	NM_172568	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118357412-2	chr11	118356912	118357912	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2001.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124582300-2	chr5	124581800	124582800	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181410, intron 1 of 12)	intron (NM_181410, intron 1 of 12)	3152.0	NM_181410	209357.0	Mm.185467	NM_181410	ENSMUSG00000029387	Gtf2h3	34kDa|5033417D07Rik|BTF2|BTF2 p34|C730029A10|D5Ertd679e|TFIIH	general transcription factor IIH, polypeptide 3	protein-coding	0.5	3.0	5.0	0.5	2.0	4.0
Merged-chr17-29353850-2	chr17	29353350	29354350	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5918.0	NM_001347335	56462.0	Mm.3224	NM_019880	ENSMUSG00000024012	Mtch1	2310034O17Rik|AI255158|AU018396|C77849|PSAP	mitochondrial carrier 1	protein-coding	1.5	2.0	0.0	0.0	0.0	0.0
Merged-chr10-107137563-2	chr10	107137063	107138063	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-13899.0	NM_198636	380660.0	Mm.336072	NM_198636	ENSMUSG00000035948	Acss3	8430416H19Rik|Gm874	acyl-CoA synthetase short-chain family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5367641-2	chr19	5367177	5368177	+	633.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104482)	promoter-TSS (NR_104482)	-801.0	NM_011793	23825.0	Mm.358649	NM_011793	ENSMUSG00000024844	Banf1	Baf|Bcrp1|L2bp1/Baf	barrier to autointegration factor 1	protein-coding	0.0	1.5	5.0	2.0	4.5	2.5
Merged-chr9-14798784-2	chr9	14798284	14799284	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018736, intron 6 of 19)	intron (NM_018736, intron 6 of 19)	14130.0	NM_018736	17535.0	Mm.149071	NM_018736	ENSMUSG00000031928	Mre11a	Mre11|Mre11b	MRE11A homolog A, double strand break repair nuclease	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46155686-2	chr17	46155186	46156186	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2135.0	NM_025649	66591.0	Mm.272024	NM_025649	ENSMUSG00000034509	Mad2l1bp	0610009D16Rik|2510031P20Rik|AU018945|AW550977|C76045|CMT2A|CMT2B|Mad2lbp|mKIAA0110	MAD2L1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59921186-3	chr10	59920742	59921742	+	632.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30528.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27204725-2	chr3	27204225	27205225	+	632.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	21721.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70905310-2	chr8	70904810	70905810	+	632.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173013)	promoter-TSS (NM_173013)	-664.0	NM_173013	270058.0	Mm.248559	NM_173013	ENSMUSG00000019261	Map1s	6430517J16Rik|Bpy2ip1|Map8|Mtap1s|VCY2IP1	microtubule-associated protein 1S	protein-coding	34.5	126.5	51.0	32.5	96.0	47.0
Merged-chr6-28482999-2	chr6	28482499	28483499	+	632.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 1 of 23)	intron (NM_019776, intron 1 of 23)	2651.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8751596-2	chr19	8751096	8752096	+	632.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019829, intron 9 of 9)	ID4|SINE|ID	5373.0	NR_132423	102640359.0	Mm.440831	NR_132423		1700023D09Rik	AV208457	RIKEN cDNA 1700023D09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36563775-2	chr18	36563275	36564275	+	632.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175375, intron 1 of 33)	intron (NM_175375, intron 1 of 33)	3172.0	NM_175375	108857.0	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124803924-2	chr6	124803424	124804424	+	632.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4737.0	NM_001306051	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-43354714-3	chr16	43354205	43355205	+	632.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	MTD|LTR|ERVL-MaLR	65491.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-114971556-2	chr8	114971045	114972045	+	632.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_019573, intron 8 of 8)	intron (NM_019573, intron 8 of 8)	531893.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80014985-2	chr7	80014485	80015485	+	632.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-9829.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	6.5	19.0	8.5	1.0	8.5	2.0
Merged-chr6-82916062-3	chr6	82915552	82916552	+	632.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308374, intron 11 of 12)	B3|SINE|B2	23717.0	NM_001308374	20355.0	Mm.270543	NM_011350	ENSMUSG00000000627	Sema4f	Sema W	sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	protein-coding	2.0	1.5	1.0	1.0	4.5	0.5
Merged-chr16-94601252-2	chr16	94600752	94601752	+	632.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-10167.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-112721723-3	chr6	112721236	112722236	+	632.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_080448, exon 22 of 22)	3' UTR (NM_080448, exon 22 of 22)	-25066.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134397397-1	chr4	134396897	134397897	+	632.666687	f1_balb.idr	promoter-TSS (NM_001285872)	promoter-TSS (NM_001285872)	-74.0	NM_001285872	100163.0	Mm.22116	NM_133880	ENSMUSG00000037366	Pafah2	2310074E22Rik|AI507170	platelet-activating factor acetylhydrolase 2	protein-coding	5.0	0.0	13.5	6.5	7.0	2.0
Merged-chr15-27709998-2	chr15	27709498	27710498	+	632.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28456.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173491281-3	chr1	173490780	173491780	+	632.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44677.0	NM_001024721	545384.0	Mm.371698	NM_001024721	ENSMUSG00000070501	Ifi214	Pyhin-B|p214	interferon activated gene 214	protein-coding	74.0	84.5	38.5	4.5	7.5	1.0
Merged-chr7-109438983-3	chr7	109438561	109439561	+	632.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054103)	promoter-TSS (NM_054103)	-8.0	NM_054103	117229.0	Mm.389950	NM_054103	ENSMUSG00000031027	Stk33	4921505G21Rik|AW061264	serine/threonine kinase 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94994441-3	chr11	94993938	94994938	+	632.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172261, intron 1 of 9)	intron (NM_172261, intron 1 of 9)	3226.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102881875-2	chr11	102881375	102882375	+	632.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011431)	promoter-TSS (NM_011431)	631.0	NM_028492	73293.0	Mm.67659	NM_028492	ENSMUSG00000020930	Ccdc103	1700039D13Rik	coiled-coil domain containing 103	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-109528519-2	chr7	109528019	109529019	+	632.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001326, intron 14 of 19)	intron (NM_001001326, intron 14 of 19)	8387.0	NR_028079	100302499.0	Mm.482651	NR_028079	ENSMUSG00000065016	Snora3	MBI-28	small nucleolar RNA, H/ACA box 3	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37320988-2	chr13	37320488	37321488	+	632.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-24357.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66357042-3	chr7	66356540	66357540	+	632.644409	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 2 of 33)	intron (NM_146191, intron 2 of 33)	24684.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	16.0	24.0	20.0	10.5	42.5	33.0
Merged-chr15-30611331-2	chr15	30610882	30611882	+	632.625	f0_balb.idr|f0_c57.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-427744.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	80.5	150.5	121.5	38.0	124.5	69.5
Merged-chr7-19756392-2	chr7	19755892	19756892	+	632.625	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_020486, exon 15 of 15)	3' UTR (NM_020486, exon 15 of 15)	-6819.0	NM_001159724	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-28531038-2	chr19	28530534	28531534	+	632.583374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001305671, exon 3 of 10)	exon (NM_001305671, exon 3 of 10)	-147190.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60756336-2	chr10	60755836	60756836	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-3554.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-189080994-1	chr1	189080494	189081494	+	632.5	f0_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-73154.0	NR_153196	226823.0	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-22536699-2	chr5	22536199	22537199	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011959, intron 4 of 13)	intron (NM_011959, intron 4 of 13)	-7669.0	NR_004442	100042049.0	Mm.21724	NR_004442		Gm15421	-	ribosomal protein L22 like 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19580188-2	chr7	19579688	19580688	+	632.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_125835)	TTS (NR_125835)	2901.0	NM_022409	63872.0	Mm.23310	NM_022409	ENSMUSG00000011267	Zfp296	2210018A16Rik|Znf296	zinc finger protein 296	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-25837266-2	chr3	25836766	25837766	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357095, intron 4 of 6)	Lx|LINE|L1	316720.0	NM_001163387	192167.0	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72821315-2	chr5	72820815	72821815	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	47133.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146081188-2	chr6	146080688	146081688	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	147066.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102439093-2	chr11	102438593	102439593	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199200, intron 7 of 7)	intron (NM_199200, intron 7 of 7)	8570.0	NM_199200	217219.0	Mm.259924	NM_199200	ENSMUSG00000034685	Fam171a2	-	family with sequence similarity 171, member A2	protein-coding	0.0	0.0	0.0	0.0	5.5	0.0
Merged-chr18-80491450-2	chr18	80490950	80491950	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21783.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110621717-2	chr7	110621217	110622217	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5940.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103045262-2	chr14	103044762	103045762	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1750.0	NM_008392	16365.0	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120259701-2	chr11	120259201	120260201	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198423, intron 3 of 27)	intron (NM_198423, intron 3 of 27)	26754.0	NM_198423	268515.0	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59597606-2	chr15	59597106	59598106	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 6 of 6)	B4|SINE|B4	-51048.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	2.0	1.5	1.0	0.0	1.5
Merged-chr10-94475472-2	chr10	94474972	94475972	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	B3A|SINE|B2	-39385.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55584789-2	chr14	55584289	55585289	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033146, intron 1 of 4)	intron (NM_033146, intron 1 of 4)	465.0	NM_033146	85308.0	Mm.40667	NM_033146	ENSMUSG00000022217	Emc9	1500005A01Rik|Cgi112|Fam158a	ER membrane protein complex subunit 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-15008737-2	chr1	15008237	15009237	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89875.0	NM_177781	277328.0	Mm.186329	NM_177781	ENSMUSG00000032769	Trpa1	Anktm1|TRPA1b	transient receptor potential cation channel, subfamily A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128773176-2	chr10	128772676	128773676	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-17734.0	NM_001164197	58223.0	Mm.131266	NM_021412	ENSMUSG00000025355	Mmp19	-	matrix metallopeptidase 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-52235802-2	chr1	52235302	52236302	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-2570.0	NM_001113383	14660.0	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-13872720-2	chr6	13872220	13873220	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045995, intron 1 of 2)	intron (NR_045995, intron 1 of 2)	1151.0	NR_045995	76311.0	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110659683-2	chr9	110659183	110660183	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	B4A|SINE|B4	3180.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	18.0	64.0	35.5	6.0	28.5	22.0
Merged-chr4-3684169-2	chr4	3683666	3684666	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	RLTR20D|LTR|ERVK	6045.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	116.0	196.5	173.0	55.0	131.5	97.5
Merged-chr19-46154337-2	chr19	46153837	46154837	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178930, intron 1 of 39)	ID_B1|SINE|B4	1779.0	NM_178930	107338.0	Mm.271620	NM_178930	ENSMUSG00000025224	Gbf1	1700083E03Rik|AI035702|AW049900|mKIAA0248	golgi-specific brefeldin A-resistance factor 1	protein-coding	17.5	7.5	8.0	0.0	9.5	7.0
Merged-chr7-25682948-2	chr7	25682448	25683448	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172148, intron 1 of 2)	B1_Mur4|SINE|Alu	1790.0	NM_172148	232987.0	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94416642-2	chr10	94416142	94417142	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	-98215.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88300637-2	chr1	88300137	88301137	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-6075.0	NM_134252	171382.0	Mm.218753	NM_134252	ENSMUSG00000036251	Trpm8	CMR1|LTRPC6|LTrpC-6|TRPP8|Trp-p8	transient receptor potential cation channel, subfamily M, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87024898-2	chr11	87024398	87025398	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-31136.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-30827873-2	chr15	30827373	30828373	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 11 of 21)	B4A|SINE|B4	-211253.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19189502-2	chr3	19189002	19190002	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356295, intron 1 of 7)	RMER19B|LTR|ERVK	1207.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	0.5	5.0	1.0	0.0	8.5	1.0
Merged-chr2-122586453-2	chr2	122585953	122586953	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24824.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-9596957-2	chr6	9596457	9597457	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17D|LTR|ERVK	646938.0	NM_008751	18231.0	Mm.46954	NM_008751	ENSMUSG00000046178	Nxph1	C130005L03Rik	neurexophilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110798157-2	chr7	110797657	110798657	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009667, intron 6 of 14)	intron (NM_009667, intron 6 of 14)	25553.0	NM_009667	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-58310923-2	chr10	58310423	58311423	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-12624.0	NM_001359115	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93755992-2	chr1	93755492	93756492	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_174874, intron 1 of 12)	intron (NM_174874, intron 1 of 12)	959.0	NM_174874	66615.0	Mm.29087	NM_174874	ENSMUSG00000026280	Atg4b	2510009N07Rik|AW048066|Apg4b|Atg4bl|Autl1	autophagy related 4B, cysteine peptidase	protein-coding	7.0	5.0	9.0	2.5	7.0	11.5
Merged-chr14-60304324-2	chr14	60303824	60304824	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	39119.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	0.0	0.0	6.5	0.0	0.0	6.0
Merged-chr5-130248906-2	chr5	130248406	130249406	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023248, intron 3 of 4)	intron (NM_023248, intron 3 of 4)	6624.0	NM_023248	66711.0	Mm.280484	NM_023248	ENSMUSG00000025337	Sbds	4733401P19Rik|AI836084|CGI-97|SDS	SBDS ribosome maturation factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-94009883-2	chr2	94009383	94010383	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026944, intron 1 of 9)	intron (NM_026944, intron 1 of 9)	847.0	NM_026944	69113.0	Mm.272498	NM_026944	ENSMUSG00000040174	Alkbh3	1700108H04Rik|1810020C19Rik|Abh3|mABH3	alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94380829-2	chr13	94380329	94381329	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009680, intron 1 of 26)	B1F2|SINE|Alu	21869.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6793455-2	chr4	6792955	6793955	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145711, intron 3 of 8)	B3|SINE|B2	197268.0	NM_145711	252838.0	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-50860203-2	chr18	50859703	50860703	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	HERV16-int|LTR|ERVL	-257695.0	NM_001081224	71373.0	Mm.63546	NM_001081224	ENSMUSG00000073565	Prr16	5430406M13Rik|AI607429	proline rich 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97495285-2	chr6	97494783	97495783	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-7463.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	4.5	1.5	4.0	30.0	27.0	9.5
Merged-chr5-117493834-2	chr5	117493334	117494334	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	79832.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	15.0	27.5	39.5	19.0	39.5	54.0
Merged-chr8-108608967-1	chr8	108608467	108609467	+	632.5	f0_balb.idr	Intergenic	Intergenic	-24290.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	1.5	2.5	3.0	0.0	3.5	1.0
Merged-chr17-8463628-2	chr17	8463128	8464128	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29205.0	NM_009309	20997.0	Mm.913	NM_009309	ENSMUSG00000062327	T	Bra|D17Mit170|Low|Lr|T1|Tbxt|Tl2|Tl3|cou|me75	brachyury, T-box transcription factor T	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-101617624-2	chr3	101617124	101618124	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12917.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	3.5	6.0	1.0	4.0	7.0	4.5
Merged-chr5-100417070-2	chr5	100416569	100417569	+	632.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026969)	promoter-TSS (NM_026969)	-835.0	NM_001359332	69162.0	Mm.18634	NM_026969	ENSMUSG00000035325	Sec31a	1810024J13Rik|ABP125|ABP130|AU042160|HSPC275|Sec31l1	Sec31 homolog A (S. cerevisiae)	protein-coding	2.0	5.0	0.5	1.0	0.0	1.0
Merged-chr14-14702091-2	chr14	14701602	14702602	+	632.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360516)	promoter-TSS (NM_001360516)	-923.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr6-98015923-2	chr6	98015423	98016423	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001178049, intron 9 of 9)	intron (NM_001178049, intron 9 of 9)	24140.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0.0	1.0	0.0	0.5	0.0	0.0
Merged-chr11-98784357-2	chr11	98783857	98784857	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8980.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153160870-2	chr2	153160370	153161370	+	632.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133847)	promoter-TSS (NM_133847)	-431.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8888934-2	chr17	8888434	8889434	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347321, intron 1 of 21)	intron (NM_001347321, intron 1 of 21)	38949.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-12938597-2	chr7	12938097	12939097	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11181.0	NM_029809	381845.0	Mm.439896	NM_029809	ENSMUSG00000033967	Rnf225	2310014L17Rik|AV237412|C77118	ring finger protein 225	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44072918-3	chr7	44072443	44073443	+	632.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20653.0	NM_020268	16619.0	Mm.445911	NM_020268	ENSMUSG00000063177	Klk1b27	Gk27|Klk21l|Klk27|mGK-27	kallikrein 1-related peptidase b27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-18666455-2	chr3	18665955	18666955	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-185978.0	NR_040544	73959.0	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70332827-2	chr8	70332327	70333327	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030680, intron 22 of 23)	intron (NM_030680, intron 22 of 23)	3062.0	NM_008107	14559.0	Mm.258280	NM_008107	ENSMUSG00000087408	Gdf1	AI385651|Gdf-1	growth differentiation factor 1	protein-coding	0.0	12.5	0.0	0.0	0.0	0.0
Merged-chr10-87930726-2	chr10	87930226	87931226	+	632.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001314010, exon 5 of 5)	exon (NM_001314010, exon 5 of 5)	-35945.0	NR_000040	22172.0	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.0	3.0	0.5	2.0	4.5	3.0
Merged-chr4-140967141-2	chr4	140966641	140967641	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355515, intron 2 of 7)	intron (NM_001355515, intron 2 of 7)	5870.0	NM_023374	67680.0	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49210722-1	chr11	49210222	49211222	+	632.5	f0_balb.idr	intron (NM_001024846, intron 1 of 4)	intron (NM_001024846, intron 1 of 4)	7222.0	NM_009562	22720.0	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96286422-2	chr11	96285922	96286922	+	632.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010460)	promoter-TSS (NM_010460)	-224.0	NM_010460	15415.0	Mm.390366	NM_010460	ENSMUSG00000038721	Hoxb7	AI325018|Hox-2.3	homeobox B7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106362776-2	chr1	106362276	106363276	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 10 of 16)	Lx8b|LINE|L1	183855.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80378952-2	chr10	80378452	80379452	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8699.0	NM_198615	237400.0	Mm.268389	NM_198615	ENSMUSG00000048696	Mex3d	BC059858|Rkhd1	mex3 RNA binding family member D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34309466-3	chr17	34308989	34309989	+	632.416687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010382, intron 1 of 5)	intron (NM_010382, intron 1 of 5)	3622.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	3.5	87.5	26.5	6.0	22.0	6.0
Merged-chr9-108190620-2	chr9	108190120	108191120	+	632.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007567)	promoter-TSS (NM_007567)	-237.0	NM_007567	12217.0	Mm.20425	NM_007567	ENSMUSG00000032589	Bsn	-	bassoon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-140944505-2	chr7	140944005	140945005	+	632.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_153832, intron 3 of 11)	intron (NR_153832, intron 3 of 11)	3114.0	NM_145387	212974.0	Mm.260139	NM_145387	ENSMUSG00000062031	Pgghg	5730511L01Rik|Athl1|BC023151	protein glucosylgalactosylhydroxylysine glucosidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180410451-2	chr1	180409951	180410951	+	632.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	73053.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-47319024-1	chr4	47318524	47319524	+	632.333313	f0_balb.idr	Intergenic	LTR16C|LTR|ERVL	-34198.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64907915-3	chr1	64907415	64908415	+	632.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 3 of 7)	intron (NM_001039493, intron 3 of 7)	48909.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57385383-3	chr16	57384910	57385910	+	632.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	32133.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21987895-4	chr14	21987404	21988404	+	632.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145459, exon 2 of 3)	5' UTR (NM_145459, exon 2 of 3)	1697.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127754496-2	chr3	127753998	127754998	+	632.25	f0_balb.idr|f1_balb.idr	intron (NM_027808, intron 1 of 13)	intron (NM_027808, intron 1 of 13)	26029.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	10.5	7.0	7.5	8.5	3.5	12.0
Merged-chr7-73523611-2	chr7	73523111	73524111	+	632.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	(GGGA)n|Simple_repeat|Simple_repeat	18135.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142498446-2	chr3	142497946	142498946	+	632.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_153564, intron 1 of 10)	(TATATG)n|Simple_repeat|Simple_repeat	1512.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24901384-3	chr7	24900869	24901869	+	632.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007655, intron 4 of 4)	intron (NM_007655, intron 4 of 4)	-1617.0	NM_001130150	16801.0	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-145928179-3	chr3	145927766	145928766	+	632.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009740, intron 1 of 2)	MIRb|SINE|MIR	4004.0	NM_009740	12042.0	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161501467-2	chr1	161500959	161501959	+	632.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_183391, intron 2 of 2)	Lx|LINE|L1	6802.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	35.0	60.0	52.5	19.5	37.0	26.0
Merged-chr15-97826477-2	chr15	97825977	97826977	+	632.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	5290.0	NM_019572	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85481495-2	chr12	85480995	85481995	+	632.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	7605.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101242715-3	chr15	101242190	101243190	+	632.111084	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17504.0	NR_045328	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	1.0	10.5	3.0	0.0	3.0	2.0
Merged-chr13-14066045-2	chr13	14065545	14066545	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194262, intron 2 of 23)	intron (NM_194262, intron 2 of 23)	2261.0	NM_198122	94246.0	Mm.439784	NM_194262	ENSMUSG00000039219	Arid4b	BCAA|BRCAA1|RBBP1L1|Rbp1l1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50537815-2	chr6	50537315	50538315	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28659.0	NM_007808	13063.0	Mm.35389	NM_007808	ENSMUSG00000063694	Cycs	-	cytochrome c, somatic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-51333409-1	chr19	51332909	51333909	+	632.0	f1_balb.idr	Intergenic	Lx5c|LINE|L1	-654763.0	NM_001290356	58178.0	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding	0.0	0.0	2.0	11.5	0.0	0.0
Merged-chr16-51267207-1	chr16	51266707	51267707	+	632.0	f1_balb.idr	Intergenic	L1_Mus4|LINE|L1	483798.0	NR_131005	78639.0	Mm.160109	NR_131005	ENSMUSG00000092276	1700116B05Rik	-	RIKEN cDNA 1700116B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-81510878-1	chr17	81510378	81511378	+	632.0	f0_balb.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	227509.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116437967-2	chr11	116437467	116438467	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176902, intron 2 of 2)	intron (NM_176902, intron 2 of 2)	3754.0	NR_003376	664849.0	Mm.258466	NR_003376		Gm7367	EG664849	1110014K08Rik pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr7-68082772-2	chr7	68082272	68083272	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	130515.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26974730-2	chr2	26974230	26975230	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001322, intron 2 of 28)	intron (NM_001001322, intron 2 of 28)	1314.0	NM_001290465	279028.0	Mm.330084	NM_001001322	ENSMUSG00000014852	Adamts13	ADAM-TS13|ADAMTS-13|Gm710|vWF-CP	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119266733-2	chr11	119266244	119267244	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1219.0	NM_001159324	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	6.5	1.0	8.5	0.0	0.5	9.5
Merged-chr4-32391470-1	chr4	32390970	32391970	+	632.0	f0_balb.idr	Intergenic	Intergenic	-25965.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73643749-2	chr15	73643249	73644249	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19005.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-79517421-2	chr14	79516921	79517921	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	1747.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-99040412-2	chr11	99039912	99040912	+	632.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010517)	promoter-TSS (NM_010517)	-832.0	NM_010517	16010.0	Mm.233799	NM_010517	ENSMUSG00000017493	Igfbp4	AI875747|Deb2|IBP-4|IGFBP-4	insulin-like growth factor binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-11371953-2	chr6	11371453	11372453	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-397575.0	NR_033776	57866.0	Mm.4397	NR_033776		AA545190	-	EST AA545190	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9916966-2	chr19	9916466	9917466	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-17433.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66086843-2	chr5	66086343	66087343	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	PB1D11|SINE|Alu	11336.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-48969135-2	chr15	48968635	48969635	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-177146.0	NM_001081391	239420.0	Mm.309363	NM_001081391	ENSMUSG00000022311	Csmd3	4930500N14Rik|mKIAA1894	CUB and Sushi multiple domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6511291-2	chr19	6510791	6511791	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 19 of 22)	intron (NM_001205234, intron 19 of 22)	31779.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98832133-2	chr7	98831633	98832633	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2979.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41978514-2	chr19	41978014	41979014	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028152, intron 1 of 30)	MTC|LTR|ERVL-MaLR	2622.0	NM_028152	72199.0	Mm.218940	NM_028152	ENSMUSG00000025159	Mms19	2410001K24Rik|2610042O15Rik|AI316855|C79368|C86341|Mms19l	MMS19 (MET18 S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-20052954-1	chr17	20052454	20053454	+	632.0	f1_balb.idr	Intergenic	MMERGLN-int|LTR|ERV1	-4749.0	NM_001104566	22313.0	Mm.379039	NM_001104566	ENSMUSG00000090315	Vmn2r104	V2r7	vomeronasal 2, receptor 104	protein-coding	0.0	0.0	1.0	5.5	0.0	2.0
Merged-chr4-34810407-2	chr4	34809907	34810907	+	632.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013889, exon 8 of 8)	exon (NM_013889, exon 8 of 8)	-32041.0	NM_025471	66291.0	Mm.28071	NM_025471	ENSMUSG00000028295	Smim8	1810030N24Rik|2810406B13Rik	small integral membrane protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100624954-2	chr11	100624454	100625454	+	632.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028024, exon 3 of 4)	exon (NM_028024, exon 3 of 4)	1999.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85278872-1	chr1	85278372	85279372	+	632.0	f1_balb.idr	Intergenic	Intergenic	-8306.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-92230398-2	chr4	92229898	92230898	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-83177.0	NM_027034	69314.0	Mm.55891	NM_027034	ENSMUSG00000028533	Izumo3	1700011H22Rik	IZUMO family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-15994704-2	chr7	15994204	15995204	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081418, intron 3 of 13)	B1_Mur2|SINE|Alu	4791.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96556005-2	chr3	96555505	96556505	+	632.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040409, exon 4 of 4)	non-coding (NR_040409, exon 4 of 4)	-1952.0	NM_023719	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	1.5	6.0	6.0	0.0	8.0	6.0
Merged-chr9-45413956-2	chr9	45413456	45414456	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7879.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0.0	0.0	3.0	0.0	0.0	0.0
Merged-chr14-103483906-2	chr14	103483406	103484406	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-29435.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14627728-2	chr8	14627228	14628228	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-260808.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	8.5	5.0	0.0	0.0	3.0	0.0
Merged-chr19-59077484-2	chr19	59076984	59077984	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-1415.0	NM_001114312	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122982090-2	chr14	122981590	122982590	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360598, intron 1 of 18)	intron (NM_001360598, intron 1 of 18)	1052.0	NM_001360599	70551.0	Mm.271988	NM_028651	ENSMUSG00000041594	Tmtc4	4930403J22Rik|5730419O14Rik	transmembrane and tetratricopeptide repeat containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62450011-1	chr15	62449511	62450511	+	632.0	f0_c57.idr	Intergenic	Intergenic	-230560.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-80075118-1	chr2	80074618	80075618	+	632.0	f1_balb.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	-36216.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.0	3.0	0.5	0.0	10.0	0.0
Merged-chr17-29014579-1	chr17	29014079	29015079	+	632.0	f1_c57bl6.idr	Intergenic	Intergenic	-6584.0	NM_001357173	106504.0	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	9.0	8.0	5.5	7.5	6.0	11.0
Merged-chr1-185294400-1	chr1	185293900	185294900	+	632.0	f0_balb.idr	intron (NM_198653, intron 18 of 22)	RSINE1|SINE|B4	-18919.0	NR_029580	387189.0		NR_029580	ENSMUSG00000065581	Mir194-1	Mirn194|Mirn194-1|miR-194|mir-194-1	microRNA 194-1	ncRNA	10.0	23.5	9.5	4.0	26.0	4.5
Merged-chr13-81104038-1	chr13	81103538	81104538	+	632.0	f0_balb.idr	intron (NM_054053, intron 88 of 89)	intron (NM_054053, intron 88 of 89)	139964.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100087938-2	chr12	100087438	100088438	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24393.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-56795335-1	chr1	56794835	56795835	+	632.0	f0_balb.idr	3' UTR (NM_139146, exon 11 of 11)	3' UTR (NM_139146, exon 11 of 11)	-157884.0	NM_027661	71066.0	Mm.152656	NM_027661	ENSMUSG00000045336	Hsfy2	4933413G11Rik|Hspy2l	heat shock transcription factor, Y-linked 2	protein-coding	0.0	0.0	2.5	0.0	0.0	1.0
Merged-chr15-98856759-2	chr15	98856259	98857259	+	632.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033276, exon 20 of 55)	exon (NM_001033276, exon 20 of 55)	14446.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3303482-1	chr7	3302982	3303982	+	632.0	f0_c57.idr	promoter-TSS (NM_011102)	promoter-TSS (NM_011102)	-50.0	NM_001291434	18752.0	Mm.7980	NM_011102	ENSMUSG00000078816	Prkcg	PKCgamma|Pkcc|Prkcc	protein kinase C, gamma	protein-coding	0.5	0.0	0.0	1.5	0.5	0.0
Merged-chr4-72232384-1	chr4	72231884	72232884	+	632.0	f0_balb.idr	Intergenic	Intergenic	31140.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-65074720-3	chr12	65074238	65075238	+	632.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013902)	promoter-TSS (NM_013902)	-800.0	NM_013902	30795.0	Mm.28480	NM_013902	ENSMUSG00000020949	Fkbp3	25kDa|FKBP-3|FKBP25	FK506 binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25371157-3	chr14	25370664	25371664	+	632.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88021.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-193273237-2	chr1	193272723	193273723	+	632.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_008059)	promoter-TSS (NM_008059)	-35.0	NM_008059	14373.0	Mm.439721	NM_008059	ENSMUSG00000009633	G0s2	AI255151|AV006465	G0/G1 switch gene 2	protein-coding	2.0	10.5	3.0	3.0	2.0	0.5
Merged-chr2-181210671-2	chr2	181210171	181211171	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011481, intron 1 of 7)	intron (NM_011481, intron 1 of 7)	2500.0	NM_011481	20811.0	Mm.4752	NM_011481	ENSMUSG00000027579	Srms	A230069J08Rik|srm	src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24446985-2	chr17	24446485	24447485	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_125990, intron 5 of 13)	intron (NR_125990, intron 5 of 13)	-3884.0	NM_025718	66705.0	Mm.29017	NM_025718	ENSMUSG00000024136	Dnase1l2	4733401H14Rik	deoxyribonuclease 1-like 2	protein-coding	0.5	4.5	3.0	0.0	0.0	0.0
Merged-chr7-96211834-1	chr7	96211334	96212334	+	632.0	f1_balb.idr	5' UTR (NM_001310760, exon 1 of 33)	5' UTR (NM_001310760, exon 1 of 33)	163.0	NM_001310760	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0.0	0.0	0.0	3.5	0.0	0.0
Merged-chr11-23634591-2	chr11	23634091	23635091	+	632.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347242)	promoter-TSS (NM_001347242)	-960.0	NM_027860	71675.0	Mm.48031	NM_027860	ENSMUSG00000042208	0610010F05Rik	Kiaa1841|mKIAA1841	RIKEN cDNA 0610010F05 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36785423-2	chr1	36784923	36785923	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6439.0	NM_001289612	22637.0	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6405506-2	chr11	6405006	6406006	+	632.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028601, exon 19 of 19)	3' UTR (NM_028601, exon 19 of 19)	3876.0	NR_106109	102465759.0		NR_106109	ENSMUSG00000098516	Mir7651	Gm27664|mmu-mir-7651	microRNA 7651	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-26849440-1	chr3	26848940	26849940	+	632.0	f1_balb.idr	intron (NM_029150, intron 5 of 10)	L1_Mus2|LINE|L1	211809.0	NM_027583	70862.0	Mm.330943	NM_027583	ENSMUSG00000039335	Spata16	4921511F01Rik|4930503K02Rik|Nyd-sp12	spermatogenesis associated 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114808204-2	chr11	114807704	114808704	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9280.0	NM_181749	217302.0	Mm.269127	NM_181749	ENSMUSG00000034677	Gpr142	PGR2	G protein-coupled receptor 142	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97284654-1	chr6	97284154	97285154	+	632.0	f1_c57bl6.idr	Intergenic	Intergenic	-31874.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	2.0	12.5	12.5	3.5	10.0	10.5
Merged-chr6-140924626-2	chr6	140924126	140925126	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	297741.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16393956-2	chr19	16393456	16394456	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCa|LINE|L1	-41711.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80705354-1	chr18	80704854	80705854	+	632.0	f0_balb.idr	intron (NM_198429, intron 1 of 9)	intron (NM_198429, intron 1 of 9)	2819.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	5.5	31.5	10.0	22.0	24.5	7.5
Merged-chr14-25476580-2	chr14	25476080	25477080	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	17395.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-167551861-1	chr1	167551361	167552361	+	632.0	f0_balb.idr	Intergenic	Intergenic	-46501.0	NM_009107	20183.0	Mm.3475	NM_009107	ENSMUSG00000015843	Rxrg	Nr2b3	retinoid X receptor gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96716020-3	chr3	96715521	96716521	+	632.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028925, intron 9 of 14)	intron (NM_028925, intron 9 of 14)	-7461.0	NM_030094	78373.0	Mm.423186	NM_030094	ENSMUSG00000028100	Nudt17	2410015C20Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-81956581-1	chr6	81956081	81957081	+	632.0	f1_balb.idr	intron (NM_177884, intron 15 of 16)	B3|SINE|B2	9368.0	NM_026490	56284.0	Mm.276293	NM_026490	ENSMUSG00000030045	Mrpl19	9030416F12Rik|9130412E02Rik|D6Ertd157e|MRP-L15|RLX1|Rpml15	mitochondrial ribosomal protein L19	protein-coding	7.0	0.0	1.0	5.0	2.0	15.5
Merged-chr11-98547473-2	chr11	98546973	98547973	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1442.0	NM_011771	22780.0	Mm.133367	NM_011771	ENSMUSG00000018168	Ikzf3	5830411O07Rik|Aiolos|Zfpn1a3|Znfn1a3	IKAROS family zinc finger 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-60569601-1	chr3	60569101	60570101	+	632.0	f0_balb.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	68422.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	7.0	6.0	16.0	1.0	12.0	9.0
Merged-chr2-127501336-2	chr2	127500838	127501838	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019789, intron 2 of 8)	intron (NM_019789, intron 2 of 8)	-18839.0	NM_001111331	56461.0	Mm.315292	NM_019789	ENSMUSG00000079056	Kcnip3	4933407H12Rik|AI413860|Csen|DREAM|KChIP3|R74849	Kv channel interacting protein 3, calsenilin	protein-coding	8.5	2.0	0.5	0.0	14.5	1.0
Merged-chr1-20821782-2	chr1	20821282	20822282	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1470.0	NM_008563	17215.0	Mm.4502	NM_008563	ENSMUSG00000041859	Mcm3	AL033361|C80350|Mcmd|P1|P1-MCM3|p1.m	minichromosome maintenance complex component 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-51509412-1	chr2	51508912	51509912	+	632.0	f0_balb.idr	Intergenic	MIRc|SINE|MIR	-71512.0	NR_130155	73375.0	Mm.396227	NR_130155	ENSMUSG00000086007	1700057H21Rik	-	RIKEN cDNA 1700057H21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-110889658-2	chr2	110889158	110890158	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355246, intron 1 of 3)	RMER13B|LTR|ERVK	-49599.0	NM_001355244	228432.0	Mm.483325	NM_001081556	ENSMUSG00000074968	Ano3	AI838058|B230324K02Rik|Tmem16c	anoctamin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-16987541-1	chr11	16987041	16988041	+	632.0	f0_balb.idr	exon (NM_019549, exon 6 of 10)	exon (NM_019549, exon 6 of 10)	21177.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128366154-2	chr10	128365654	128366654	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081040, intron 2 of 4)	intron (NM_001081040, intron 2 of 4)	3883.0	NM_001081040	210582.0	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75165594-2	chr14	75165094	75166094	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	29169.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65849288-1	chr17	65848788	65849788	+	632.0	f1_c57bl6.idr	3' UTR (NM_009067, exon 10 of 10)	3' UTR (NM_009067, exon 10 of 10)	35635.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr11-16589514-1	chr11	16589014	16590014	+	632.0	f0_balb.idr	Intergenic	Intergenic	-81030.0	NM_001109971	20335.0	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78596636-2	chr15	78596136	78597136	+	632.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028195)	promoter-TSS (NM_028195)	-411.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-119451030-2	chr6	119450530	119451530	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009525, intron 1 of 4)	intron (NM_009525, intron 1 of 4)	-1644.0	NM_001271757	22419.0	Mm.321818	NM_009525	ENSMUSG00000030170	Wnt5b	AW545702|Wnt-5b	wingless-type MMTV integration site family, member 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128019397-1	chr7	128018897	128019897	+	632.0	f0_balb.idr	Intergenic	Lx8|LINE|L1	15019.0	NM_001079932	434246.0	Mm.389924	NM_001079932	ENSMUSG00000042828	Trim72	BC067209|MG53	tripartite motif-containing 72	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26482932-1	chr2	26482432	26483432	+	632.0	f0_balb.idr	intron (NM_008714, intron 4 of 33)	intron (NM_008714, intron 4 of 33)	-12813.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25188850-2	chr12	25188350	25189350	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59676.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-31952807-2	chr12	31952270	31953270	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2525.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	33.0	33.5	19.5	11.5	15.5	9.5
Merged-chr19-5509935-2	chr19	5509435	5510435	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362042, intron 1 of 11)	intron (NM_001362042, intron 1 of 11)	582.0	NM_001362042	225861.0	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	4.0	3.0	5.0	0.0	9.5	2.5
Merged-chr1-165669867-2	chr1	165669367	165670367	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	-35326.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19183589-2	chr10	19183089	19184089	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038022, intron 1 of 1)	intron (NR_038022, intron 1 of 1)	16351.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100817365-1	chr7	100816865	100817865	+	632.0	f0_balb.idr	intron (NM_178764, intron 4 of 8)	ID_B1|SINE|B4	46048.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-75038128-2	chr4	75037628	75038628	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	240164.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24753582-2	chr5	24753082	24754082	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153076, intron 3 of 3)	intron (NM_153076, intron 3 of 3)	4261.0	NM_153076	214301.0	Mm.63484	NM_153076	ENSMUSG00000038135	Crygn	-	crystallin, gamma N	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61056575-2	chr18	61056075	61057075	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008809, intron 1 of 22)	intron (NM_008809, intron 1 of 22)	11425.0	NM_008809	18596.0	Mm.4146	NM_008809	ENSMUSG00000024620	Pdgfrb	AI528809|CD140b|PDGFR-1|Pdgfr	platelet derived growth factor receptor, beta polypeptide	protein-coding	0.0	7.5	0.0	1.5	0.0	0.0
Merged-chr11-70073966-2	chr11	70073466	70074466	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18678.0	NM_007493	11890.0	Mm.1357	NM_007493	ENSMUSG00000040963	Asgr2	ASGPR2|Asgr|Asgr-2|HL-2	asialoglycoprotein receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12742656-1	chr17	12742156	12743156	+	632.0	f0_balb.idr	intron (NR_027773, intron 1 of 2)	intron (NR_027773, intron 1 of 2)	1345.0	NR_027784	104103.0	Mm.26553	NR_002853	ENSMUSG00000078247	Airn	2810051F02Rik|2810434M15Rik|AI256653|AI597500|AW049873|Air|B930018I07Rik|D17Ertd663e|IGF2RAS	antisense Igf2r RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83147732-1	chr8	83147232	83148232	+	632.0	f1_balb.idr	Intergenic	L1_Mus2|LINE|L1	-17620.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	30.5	42.0	37.0	22.0	45.0	40.0
Merged-chr9-3687627-1	chr9	3687127	3688127	+	632.0	f1_balb.idr	intron (NM_001033322, intron 4 of 7)	L1_Mus2|LINE|L1	155278.0	NM_001033322	234889.0	Mm.91240	NM_001033322	ENSMUSG00000041624	Gucy1a2	6330407I18Rik|A230060L24Rik	guanylate cyclase 1, soluble, alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6223770-2	chr2	6223270	6224270	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 1 of 6)	intron (NR_040333, intron 1 of 6)	-10776.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	16.0	15.0	8.0	4.5	4.0	3.0
Merged-chr2-172413301-2	chr2	172412801	172413801	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080820, intron 1 of 6)	intron (NM_001080820, intron 1 of 6)	19507.0	NM_001276423	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-98329591-3	chr6	98329091	98330091	+	631.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128092, intron 2 of 3)	intron (NM_001128092, intron 2 of 3)	13163.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	2.5	0.0	1.0	2.5	0.0	1.0
Merged-chr19-4162642-2	chr19	4162142	4163142	+	631.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_021485, exon 3 of 15)	exon (NM_021485, exon 3 of 15)	741.0	NR_153661	58988.0	Mm.271937	NM_021485	ENSMUSG00000024830	Rps6kb2	S6K-beta-2|S6K2	ribosomal protein S6 kinase, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41978591-3	chr10	41978092	41979092	+	631.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 6 of 17)	intron (NM_001034858, intron 6 of 17)	39790.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-133046835-3	chr1	133046358	133047358	+	631.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099276, intron 1 of 32)	intron (NM_001099276, intron 1 of 32)	846.0	NM_001099276	240752.0	Mm.387308	NM_001099276	ENSMUSG00000026447	Pik3c2b	C330011J12Rik|Gm199|PI3K-C2beta|PI3KC2beta	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta	protein-coding	0.5	6.0	0.0	0.5	3.5	1.0
Merged-chr6-71293750-2	chr6	71293250	71294250	+	631.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357905)	promoter-TSS (NM_001357905)	-15.0	NM_001357905	381785.0	Mm.333146	NM_001033462	ENSMUSG00000073018	Gm1070	-	predicted gene 1070	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45262324-2	chr9	45261917	45262917	+	631.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_136903, intron 4 of 5)	intron (NR_136903, intron 4 of 5)	4290.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	3.5	24.5	18.0	13.5	25.5	16.0
Merged-chr8-124744866-2	chr8	124744336	124745336	+	631.75	f0_balb.idr|f1_balb.idr	intron (NM_001081120, intron 1 of 1)	intron (NM_001081120, intron 1 of 1)	6973.0	NM_001081120	69627.0	Mm.271600	NM_001081120	ENSMUSG00000043068	Fam89a	2310031A18Rik	family with sequence similarity 89, member A	protein-coding	0.0	3.0	1.5	38.5	80.5	32.0
Merged-chr10-43578582-2	chr10	43578082	43579082	+	631.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009846)	promoter-TSS (NM_009846)	-587.0	NM_009846	12484.0	Mm.29742	NM_009846	ENSMUSG00000047139	Cd24a	Cd24|HSA|Ly-52|nectadrin	CD24a antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-113730476-2	chr9	113729953	113730953	+	631.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11020.0	NM_001286599	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	1.5	2.5	3.5	0.0	2.5	3.5
Merged-chr19-40739440-2	chr19	40738940	40739940	+	631.700012	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009848, exon 10 of 10)	3' UTR (NM_009848, exon 10 of 10)	79670.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38602245-1	chr18	38601745	38602745	+	631.666687	f1_c57bl6.idr	promoter-TSS (NM_011898)	promoter-TSS (NM_011898)	-977.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	0.0	7.5	1.0	1.5	12.0	3.5
Merged-chr13-91403330-3	chr13	91402797	91403797	+	631.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15212.0	NR_045161	320297.0	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28342056-2	chr7	28341556	28342556	+	631.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	(GGA)n|Simple_repeat|Simple_repeat	-3337.0	NM_013676	20924.0	Mm.285906	NM_013676	ENSMUSG00000003435	Supt5	AL033283|AL033321|AU019549|Spt5|Supt5h	suppressor of Ty 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111712180-2	chr12	111711680	111712680	+	631.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_027404, intron 1 of 1)	PB1D10|SINE|Alu	773.0	NM_001324481	70369.0	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45570098-2	chr17	45569598	45570598	+	631.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008302, intron 6 of 10)	intron (NM_008302, intron 6 of 10)	3163.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	4.5	5.0	5.0	0.5	8.0	5.0
Merged-chr10-68473546-2	chr10	68473046	68474046	+	631.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028491, intron 5 of 7)	(CA)n|Simple_repeat|Simple_repeat	68329.0	NM_028491	73287.0	Mm.141830	NM_028491	ENSMUSG00000019945	Cabcoco1	1700040L02Rik	ciliary associated calcium binding coiled-coil 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36127821-4	chr1	36127302	36128302	+	631.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16511.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-53452597-2	chr3	53452097	53453097	+	631.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172501, exon 7 of 7)	exon (NM_172501, exon 7 of 7)	10661.0	NM_172501	212114.0	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80941777-2	chr10	80941277	80942277	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11686.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32134818-2	chr18	32134318	32135318	+	631.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313938, intron 3 of 8)	intron (NM_001313938, intron 3 of 8)	3387.0	NM_008934	19123.0	Mm.2786	NM_008934	ENSMUSG00000024386	Proc	PC	protein C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126946570-2	chr8	126946070	126947070	+	631.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024214)	promoter-TSS (NM_024214)	-649.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126937121-2	chr8	126936621	126937621	+	631.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_024214, exon 4 of 5)	exon (NM_024214, exon 4 of 5)	8800.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95714472-2	chr8	95713972	95714972	+	631.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001195006, exon 15 of 15)	3' UTR (NM_001195006, exon 15 of 15)	-1441.0	NM_001035123	66083.0	Mm.261321	NM_001035123	ENSMUSG00000031671	Setd6	0610039J04Rik|3110004G14Rik|AI413388|C76402	SET domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25677484-2	chr17	25676984	25677984	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39688.0	NM_022422	64337.0	Mm.171123	NM_022422	ENSMUSG00000025739	Gng13	1500031D04Rik|AB030194|Ggamma13	guanine nucleotide binding protein (G protein), gamma 13	protein-coding	9.5	21.5	20.0	18.5	22.0	18.5
Merged-chr5-69555389-2	chr5	69554889	69555889	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1535.0	NM_172711	231279.0	Mm.21105	NM_172711	ENSMUSG00000029208	Guf1	4631409J12|AA407526|EF-4	GUF1 homolog, GTPase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-31775195-2	chr13	31774695	31775695	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31451.0	NM_008592	17300.0	Mm.12949	NM_008592	ENSMUSG00000050295	Foxc1	FREAC3|Fkh1|Mf1|Mf4|ch|fkh-1|frkhda	forkhead box C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr11-110496327-2	chr11	110495726	110496726	+	631.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 7 of 11)	intron (NM_001356352, intron 7 of 11)	16886.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	4.5	4.0	0.0	4.5	0.0	0.5
Merged-chr14-46831503-1	chr14	46831003	46832003	+	631.5	f0_balb.idr	promoter-TSS (NM_001360455)	promoter-TSS (NM_001360455)	-631.0	NM_001360454	68755.0	Mm.343809	NM_026832	ENSMUSG00000055128	Cgrrf1	1110038G02Rik|1810009H17Rik|CGR19	cell growth regulator with ring finger domain 1	protein-coding	8.5	44.5	28.0	16.0	46.0	29.0
Merged-chr7-4143039-2	chr7	4142539	4143539	+	631.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172736, intron 8 of 14)	intron (NM_172736, intron 8 of 14)	5983.0	NM_172736	232798.0	Mm.22831	NM_172736	ENSMUSG00000035545	Leng8	AW049671	leukocyte receptor cluster (LRC) member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26532645-2	chr8	26532145	26533145	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	291778.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-46867157-2	chr14	46866656	46867656	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15809.0	NM_028966	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	29.5	15.5	38.0	11.0	9.0	23.5
Merged-chr19-7382495-4	chr19	7381990	7382990	+	631.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045703)	promoter-TSS (NR_045703)	-513.0	NR_045703	654802.0	Mm.414924	NR_045703		1700105P06Rik	-	RIKEN cDNA 1700105P06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98723901-2	chr15	98723401	98724401	+	631.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153518)	TTS (NM_153518)	3726.0	NM_001357893	66120.0	Mm.30729	NM_024169	ENSMUSG00000003355	Fkbp11	1110002O23Rik|FKBP-11	FK506 binding protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-35136358-2	chr4	35135858	35136858	+	631.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	ORR1D-int|LTR|ERVL-MaLR	-15697.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-11362455-2	chr10	11361955	11362955	+	631.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010146, intron 1 of 3)	intron (NM_010146, intron 1 of 3)	19010.0	NM_010146	13853.0	Mm.89946	NM_010146	ENSMUSG00000055493	Epm2a	TG-B|Tg(TcraK,TcrbK)TG-BFlv	epilepsy, progressive myoclonic epilepsy, type 2 gene alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43675517-2	chr7	43675017	43676017	+	631.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_145582, exon 2 of 3)	exon (NM_145582, exon 2 of 3)	3486.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94599150-2	chr10	94598650	94599650	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12951.0	NR_106070	102466817.0		NR_106070	ENSMUSG00000098544	Mir7211	Gm27536|mmu-mir-7211	microRNA 7211	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21618870-2	chr10	21618370	21619370	+	631.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_027968, intron 2 of 2)	intron (NR_027968, intron 2 of 2)	25725.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101365951-2	chr7	101365451	101366451	+	631.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	B1F1|SINE|Alu	-12171.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66012769-2	chr5	66012269	66013269	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8484.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67884081-2	chr5	67883581	67884581	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36650.0	NM_001038999	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167745561-2	chr2	167745061	167746061	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54384.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-98249926-2	chr2	98249426	98250426	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	782269.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	1.0	0.0	1.0	1.0	0.0	0.0
Merged-chr8-124775875-2	chr8	124775376	124776376	+	631.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-17143.0	NM_198632	330863.0	Mm.422769	NM_198632	ENSMUSG00000036913	Trim67	D130049O21Rik|TNL	tripartite motif-containing 67	protein-coding	3.5	0.0	5.0	4.5	0.0	0.0
Merged-chr13-51313724-2	chr13	51313224	51314224	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94894.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43182155-2	chr5	43181655	43182655	+	631.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 5 of 7)	intron (NR_028417, intron 5 of 7)	-51308.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	2.0	7.0	15.5	3.5	7.5	15.5
Merged-chr12-9167710-2	chr12	9167210	9168210	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137713.0	NM_029321	75516.0	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124845045-2	chr6	124844545	124845545	+	631.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013534, exon 13 of 15)	exon (NM_013534, exon 13 of 15)	-4770.0	NM_013530	14695.0	Mm.68889	NM_013530	ENSMUSG00000023439	Gnb3	Gnb-3	guanine nucleotide binding protein (G protein), beta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54966515-2	chr11	54966015	54967015	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3575.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-129022780-2	chr5	129022280	129023280	+	631.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009391, exon 7 of 7)	exon (NM_009391, exon 7 of 7)	2624.0	NM_009391	19384.0	Mm.297440	NM_009391	ENSMUSG00000029430	Ran	-	RAN, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-89646425-2	chr1	89645925	89646925	+	631.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 6 of 16)	MIR|SINE|MIR	37467.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-178316050-2	chr1	178315550	178316550	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-3103.0	NM_025511	66359.0	Mm.489720	NM_025511	ENSMUSG00000026500	Cox20	2310005N03Rik|Fam36a	COX20 Cox2 chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51378575-2	chr3	51378075	51379075	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17972.0	NR_028121	67749.0	Mm.273339	NM_026358	ENSMUSG00000037161	Mgarp	4930583H14Rik|AI195347|CESP-1|HUMMR|Osap|Qsap	mitochondria localized glutamic acid rich protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158763338-2	chr2	158762838	158763838	+	631.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001159662, exon 11 of 11)	3' UTR (NM_001159662, exon 11 of 11)	-4761.0	NM_027975	71878.0	Mm.85162	NM_027975	ENSMUSG00000027654	Fam83d	2310007D09Rik|BB104611	family with sequence similarity 83, member D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-51173502-2	chr7	51173002	51174002	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur1|LINE|L1	-337527.0	NR_073508	233246.0	Mm.254431	NM_177694	ENSMUSG00000055489	Ano5	9330162L24|Gdd1|Tmem16e	anoctamin 5	protein-coding	0.0	4.5	1.5	5.5	0.0	0.0
Merged-chr2-118164287-2	chr2	118163787	118164787	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52411.0	NM_001313914	21825.0	Mm.4159	NM_011580	ENSMUSG00000040152	Thbs1	TSP-1|TSP1|Thbs-1|tbsp1	thrombospondin 1	protein-coding	5.5	4.0	5.5	0.0	3.5	3.5
Merged-chr10-80989606-2	chr10	80989106	80990106	+	631.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	11759.0	NM_001038655	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27612957-1	chr17	27612457	27613457	+	631.5	f1_c57bl6.idr	intron (NM_019837, intron 1 of 4)	intron (NM_019837, intron 1 of 4)	10007.0	NM_001291046	56409.0	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	2.5	2.5	4.0	0.0	0.0	2.0
Merged-chr11-69034907-2	chr11	69034407	69035407	+	631.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001013256, exon 20 of 23)	exon (NM_001013256, exon 20 of 23)	-10730.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-46058854-2	chr10	46058354	46059354	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-185894.0	NR_028274	100302593.0		NR_028274	ENSMUSG00000095118	Snord14d	Gm23710	small nucleolar RNA, C/D box 14D	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-61373866-2	chr1	61373366	61374366	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4566.0	NR_040483	77341.0	Mm.402964	NR_040483	ENSMUSG00000085447	9530026F06Rik	-	RIKEN cDNA 9530026F06 gene	ncRNA	2.5	0.0	0.5	0.0	0.0	1.0
Merged-chr11-5540325-2	chr11	5539825	5540825	+	631.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134033, intron 2 of 4)	intron (NM_134033, intron 2 of 4)	1892.0	NM_134033	104479.0	Mm.210403	NM_134033	ENSMUSG00000020482	Ccdc117	1110004K02Rik|1700026O03Rik|AU018638|AU042822|AV173073|BC018601	coiled-coil domain containing 117	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr5-137096278-2	chr5	137095778	137096778	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19929.0	NM_201373	384309.0	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	3.5	0.0	2.0	0.0	11.5	2.5
Merged-chr5-124090517-2	chr5	124090017	124091017	+	631.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019875, intron 1 of 11)	PB1D7|SINE|Alu	5281.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134341578-2	chr5	134341078	134342078	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15124.0	NR_039544	100628570.0		NR_039544	ENSMUSG00000093311	Mir3965	mmu-mir-3965|mu-mir-3965	microRNA 3965	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22479262-2	chr9	22478762	22479762	+	631.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178415, intron 2 of 22)	intron (NM_178415, intron 2 of 22)	3547.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-107901632-2	chr5	107901132	107902132	+	631.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016980, intron 1 of 7)	intron (NM_016980, intron 1 of 7)	1104.0	NM_016980	100503670.0	Mm.277897	NM_016980	ENSMUSG00000058558	Rpl5	U21RNA	ribosomal protein L5	protein-coding	6.5	27.0	9.0	6.5	22.0	3.0
Merged-chr4-45973634-2	chr4	45973134	45974134	+	631.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355189, intron 1 of 16)	intron (NM_001355189, intron 1 of 16)	803.0	NM_001355189	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	0.5	0.0	0.0	2.0	0.5	0.0
Merged-chr6-142022777-2	chr6	142022277	142023277	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-14032.0	NM_001081318	625716.0	Mm.295865	NM_001081318	ENSMUSG00000079263	Gm6614	EG625716	predicted gene 6614	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12381804-2	chr15	12381304	12382304	+	631.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081064, intron 18 of 23)	RSINE1|SINE|B4	60308.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53631528-2	chr4	53631054	53632054	+	631.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195284)	promoter-TSS (NM_001195284)	83.0	NM_001195284	319636.0	Mm.103464	NM_176966	ENSMUSG00000054752	Fsd1l	A230072O16Rik|Ccdc10|Csdufd1|Fsd1nl	fibronectin type III and SPRY domain containing 1-like	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr6-32200920-2	chr6	32200420	32201420	+	631.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_175750, exon 16 of 32)	exon (NM_175750, exon 16 of 32)	150632.0	NM_029587	76382.0	Mm.23510	NM_029587	ENSMUSG00000029766	1700012A03Rik	AI429084	RIKEN cDNA 1700012A03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73488528-2	chr14	73488028	73489028	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21521.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44708516-5	chr9	44708010	44709010	+	631.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153537, intron 9 of 21)	CpG	26688.0	NM_153537	102693.0	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-54680238-3	chr3	54679753	54680753	+	631.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12562.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	0.0	0.0	2.5	3.0	4.0	1.0
Merged-chr12-99614548-2	chr12	99614048	99615048	+	631.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_136760, intron 2 of 3)	intron (NR_136760, intron 2 of 3)	13426.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107991859-2	chr13	107991359	107992359	+	631.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52615.0	NM_001048250	75616.0	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	0.0	1.5	1.0	0.0	0.0	0.5
Merged-chr9-119358515-2	chr9	119358015	119359015	+	631.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359699, intron 1 of 17)	intron (NM_001359699, intron 1 of 17)	1134.0	NM_001359699	102448.0	Mm.219497	NM_001033209	ENSMUSG00000035769	Xylb	AI132223|AI327421	xylulokinase homolog (H. influenzae)	protein-coding	0.0	2.0	0.5	0.5	0.0	2.0
Merged-chr1-87205234-3	chr1	87204746	87205746	+	631.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009604)	promoter-TSS (NM_009604)	-565.0	NM_009604	11449.0	Mm.2810	NM_009604	ENSMUSG00000026253	Chrng	Achr-3|Acrg	cholinergic receptor, nicotinic, gamma polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83513119-3	chr17	83512503	83513503	+	631.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009187, intron 1 of 2)	intron (NM_009187, intron 1 of 2)	1330.0	NM_009187	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32476550-2	chr9	32476050	32477050	+	631.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 2 of 8)	intron (NM_008026, intron 2 of 8)	64902.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-19528987-4	chr2	19528480	19529480	+	631.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027600, intron 4 of 16)	intron (NM_027600, intron 4 of 16)	24930.0	NM_027600	70909.0	Mm.158488	NM_027600	ENSMUSG00000026734	4921504E06Rik	4921522E24Rik	RIKEN cDNA 4921504E06 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4170530-2	chr8	4170009	4171009	+	631.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346730, intron 1 of 19)	B3A|SINE|B2	3942.0	NM_001346730	213027.0	Mm.437106	NM_153536	ENSMUSG00000011832	Evi5l	1700084G18Rik|2310039H16Rik|3110007G05Rik|B130050I23Rik	ecotropic viral integration site 5 like	protein-coding	4.0	3.0	0.0	0.0	0.0	0.0
Merged-chr13-24805257-2	chr13	24804757	24805757	+	631.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_024473, intron 2 of 4)	intron (NM_024473, intron 2 of 4)	3600.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166458653-2	chr2	166458153	166459153	+	631.25	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015558, exon 3 of 3)	non-coding (NR_015558, exon 3 of 3)	11202.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-166380647-2	chr1	166380147	166381147	+	631.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_030245, intron 1 of 7)	intron (NM_030245, intron 1 of 7)	1480.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166718884-2	chr2	166718384	166719384	+	631.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-5052.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77760242-2	chr15	77759742	77760742	+	631.099976	f1_balb.idr|f1_c57bl6.idr	TTS (NM_022410)	TTS (NM_022410)	-3232.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-9739803-2	chr1	9739303	9740303	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173443, intron 1 of 2)	RSINE1|SINE|B4	-7845.0	NR_040462	73331.0	Mm.460470	NR_040462		1700034P13Rik	-	RIKEN cDNA 1700034P13 gene	ncRNA	0.0	13.5	2.0	0.0	12.0	1.5
Merged-chr3-100533846-2	chr3	100533355	100534355	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44663.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	1.0	1.5	7.0	0.0	0.0	0.0
Merged-chr17-61572874-2	chr17	61572374	61573374	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	1308443.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191331630-2	chr1	191331130	191332130	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025864, intron 2 of 7)	PB1D10|SINE|Alu	5665.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	6.5	9.0	15.0	5.5	2.5	6.0
Merged-chr9-52289232-2	chr9	52288732	52289732	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121121.0	NM_001162921	244871.0	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161737000-2	chr1	161736514	161737514	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51481.0	NM_001205243	14103.0	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	0.0	0.5	2.5	0.5	11.5	0.5
Merged-chr7-73529356-2	chr7	73528856	73529856	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	12390.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28327052-2	chr17	28326552	28327552	+	631.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163820)	TTS (NM_001163820)	-1419.0	NM_011287	19896.0	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127078080-2	chr7	127077580	127078580	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13356.0	NM_178901	101602.0	Mm.490357	NM_178901	ENSMUSG00000045165	AI467606	-	expressed sequence AI467606	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43038342-2	chr4	43037842	43038842	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045567, intron 1 of 7)	PB1D10|SINE|Alu	1959.0	NM_001253353	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr6-52270717-2	chr6	52270217	52271217	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7942.0	NR_110442	791364.0	Mm.97466	NR_110441	ENSMUSG00000055408	Hottip	Gm15053	Hoxa distal transcript antisense RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-33953685-1	chr13	33953185	33954185	+	631.0	f1_c57bl6.idr	intron (NR_040707, intron 2 of 4)	intron (NR_040707, intron 2 of 4)	-10974.0	NM_001163239	18105.0	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	N-ribosyldihydronicotinamide quinone reductase 2	protein-coding	2.0	0.0	4.5	1.0	0.0	1.0
Merged-chr6-8028571-2	chr6	8028071	8029071	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037865, intron 27 of 34)	intron (NM_001037865, intron 27 of 34)	164046.0	NM_001037865	213945.0	Mm.297404	NM_001037865	ENSMUSG00000068794	Col28a1	Col28|Gm466	collagen, type XXVIII, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83810428-2	chr7	83809928	83810928	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15589.0	NM_029335	75556.0	Mm.17649	NM_029335	ENSMUSG00000011154	Cfap161	1700026D08Rik|AW047638|AW551802	cilia and flagella associated protein 161	protein-coding	1.5	10.5	2.0	0.5	0.0	8.5
Merged-chr15-98571241-1	chr15	98570741	98571741	+	631.0	f0_balb.idr	TTS (NR_028442)	TTS (NR_028442)	237.0	NM_001201322	73863.0	Mm.66894	NM_001201322	ENSMUSG00000022993	4930415O20Rik	-	RIKEN cDNA 4930415O20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129713004-1	chr6	129712504	129713504	+	631.0	f0_c57.idr	intron (NM_001012520, intron 1 of 5)	intron (NM_001012520, intron 1 of 5)	4128.0	NM_001012520	503550.0	Mm.376476	NM_001012520	ENSMUSG00000067610	Klri1	-	killer cell lectin-like receptor family I member 1	protein-coding	14.0	33.5	11.5	8.5	25.5	11.0
Merged-chr14-64734675-1	chr14	64734175	64735175	+	631.0	f1_c57bl6.idr	intron (NM_001081177, intron 10 of 39)	MLTR25A|LTR|ERVK	82144.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	0.0	0.5	2.0	0.0	2.0	1.0
Merged-chr2-152779422-2	chr2	152778922	152779922	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289739, intron 2 of 4)	L2|LINE|L2	25249.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	1.0	0.0	2.5	1.0	0.0	2.5
Merged-chr2-166702333-2	chr2	166701833	166702833	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	L2|LINE|L2	11499.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6118308-2	chr2	6117808	6118808	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144883, intron 1 of 3)	intron (NM_144883, intron 1 of 3)	11877.0	NM_144883	227545.0	Mm.133542	NM_144883	ENSMUSG00000045319	Proser2	5430407P10Rik|AU067770	proline and serine rich 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8972975-1	chr3	8972475	8973475	+	631.0	f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	L1MC2|LINE|L1	-8829.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	10.5	6.0	2.0	7.5	7.0	5.0
Merged-chr4-39614761-2	chr4	39614261	39615261	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	164468.0	NM_001081095	75471.0	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding	3.5	11.0	19.5	3.5	13.0	14.5
Merged-chr5-123463845-1	chr5	123463345	123464345	+	631.0	f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	18256.0	NM_029594	76399.0	Mm.75049	NM_029594	ENSMUSG00000029437	Il31	1700013B14Rik	interleukin 31	protein-coding	0.0	4.0	0.0	0.0	0.0	0.0
Merged-chr9-32350559-2	chr9	32350059	32351059	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6322.0	NM_010605	16521.0	Mm.69472	NM_010605	ENSMUSG00000032034	Kcnj5	GIRK4|Kir3.4	potassium inwardly-rectifying channel, subfamily J, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107294593-2	chr11	107294093	107295093	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 5 of 9)	intron (NR_153311, intron 5 of 9)	-105212.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17924320-1	chr10	17923820	17924820	+	631.0	f0_balb.idr	intron (NM_001033432, intron 1 of 3)	MTD|LTR|ERVL-MaLR	23747.0	NM_001033432	380629.0	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	1.0	4.0	1.0	4.5	3.5	4.0
Merged-chr4-133843727-1	chr4	133843227	133844227	+	631.0	f1_balb.idr	Intergenic	RSINE1|SINE|B4	31004.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	4.5	7.0	0.0	12.5	8.0	0.5
Merged-chr12-98263005-2	chr12	98262505	98263505	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3546.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53265487-2	chr19	53264987	53265987	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10282.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-40532424-2	chr3	40531924	40532924	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8343.0	NM_175515	380614.0	Mm.105309	NM_175515	ENSMUSG00000060798	Intu	9230116I04Rik|9430087H23Rik|Pdzd6|Pdzk6|mKIAA1284	inturned planar cell polarity protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88651267-2	chr3	88650767	88651767	+	631.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_181817)	TTS (NM_181817)	1875.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	3.5	3.0	0.5	6.5	2.5	0.5
Merged-chr16-22798721-1	chr16	22798221	22799221	+	631.0	f0_balb.idr	Intergenic	Intergenic	12689.0	NM_009967	12970.0	Mm.6253	NM_009967	ENSMUSG00000033501	Crygs	AI327013|Opj|rncat	crystallin, gamma S	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17862736-1	chr17	17862236	17863236	+	631.0	f1_balb.idr	Intergenic	Intergenic	-7548.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	10.5	20.5	14.5	15.0	28.0	17.0
Merged-chr1-55837583-2	chr1	55837083	55838083	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93658.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	0.0	3.5	2.5	0.0	0.0	8.0
Merged-chr13-44272012-1	chr13	44271512	44272512	+	631.0	f0_balb.idr	Intergenic	RMER5|LTR|ERV1	-55525.0	NR_045088	100503592.0	Mm.184925	NR_045088	ENSMUSG00000113186	A330076C08Rik	-	RIKEN cDNA A330076C08 gene	ncRNA	0.0	0.0	2.5	0.0	0.0	4.5
Merged-chr8-83656352-1	chr8	83655852	83656852	+	631.0	f1_balb.idr	intron (NM_018771, intron 1 of 6)	RSINE1|SINE|B4	3674.0	NM_018771	67903.0	Mm.20945	NM_018771	ENSMUSG00000019433	Gipc1	GIPC|Glut1CIP|Rgs19ip1|Semcap1|TIP-2|TaxIP2	GIPC PDZ domain containing family, member 1	protein-coding	23.5	24.0	37.5	4.0	8.0	26.5
Merged-chr12-54657371-2	chr12	54656871	54657871	+	631.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134054)	promoter-TSS (NM_134054)	-799.0	NM_134054	104725.0	Mm.485026	NM_134054	ENSMUSG00000044408	Sptssa	1110002B05Rik|AA407909|AA409588|AU041967|Ssspta	serine palmitoyltransferase, small subunit A	protein-coding	0.0	0.0	0.0	3.5	0.0	0.0
Merged-chr8-122436233-2	chr8	122435733	122436733	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028354, intron 9 of 10)	B1F|SINE|Alu	-3293.0	NM_007806	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95889882-2	chr15	95889382	95890382	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 2 of 19)	ORR1D1|LTR|ERVL-MaLR	-59810.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-4077726-2	chr10	4077226	4078226	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 20 of 27)	intron (NM_001170785, intron 20 of 27)	104651.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-30620689-2	chr10	30620189	30621189	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2323.0	NM_025798	66847.0	Mm.46218	NM_025798	ENSMUSG00000019791	Hint3	0610010I17Rik|AV009015|HINT-3|HINT-4|HINT4	histidine triad nucleotide binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44423256-2	chr19	44422756	44423756	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15547.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93600487-2	chr2	93599987	93600987	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-41947.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142898543-2	chr5	142898043	142899043	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR35B_MM|LTR|ERVL	-3305.0	NM_001033312	231863.0	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167336827-2	chr2	167336327	167337327	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	12351.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143734743-2	chr5	143734243	143735243	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2463.0	NM_029749	76800.0	Mm.259620	NM_029749	ENSMUSG00000051306	Usp42	2410140K03Rik|3110031A07Rik|A630018G05Rik|D5Ertd591e	ubiquitin specific peptidase 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133208043-2	chr4	133207537	133208537	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4499.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	0.0	0.0	4.5	9.5	9.5	13.0
Merged-chr5-64327395-3	chr5	64326871	64327871	+	631.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 14 of 18)	intron (NM_001289514, intron 14 of 18)	97014.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	1.0	3.0	8.0	8.5	5.0	3.5
Merged-chr4-9133524-1	chr4	9133024	9134024	+	631.0	f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-135769.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr10-80604228-1	chr10	80603728	80604728	+	631.0	f0_balb.idr	intron (NM_019575, intron 1 of 6)	intron (NM_019575, intron 1 of 6)	1346.0	NM_019575	56214.0	Mm.273170	NM_019575	ENSMUSG00000113949	Scamp4	2410022D05Rik|AI448940|AU022392|AW742369|Sc4	secretory carrier membrane protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-12343563-1	chr14	12343063	12344063	+	631.0	f1_c57bl6.idr	intron (NM_080433, intron 4 of 4)	intron (NM_080433, intron 4 of 4)	2302.0	NM_080433	54713.0	Mm.34644	NM_080433	ENSMUSG00000021743	Fezf2	AI451466|AI852056|Fez|Fezl|Zfp312	Fez family zinc finger 2	protein-coding	0.0	0.0	0.0	1.5	0.0	0.0
Merged-chr18-38210045-2	chr18	38209545	38210545	+	631.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029357)	promoter-TSS (NM_029357)	-283.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3623567-1	chr19	3623067	3624067	+	631.0	f1_balb.idr	intron (NM_008513, intron 7 of 22)	B2_Mm2|SINE|B2	-47818.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	8.0	0.0	7.0	4.5	3.0	2.0
Merged-chr13-52821513-2	chr13	52821013	52822013	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64308.0	NR_027893	105404.0	Mm.184173	NR_027893		BB123696	-	expressed sequence BB123696	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-119026513-3	chr12	119025967	119026967	+	631.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-60046.0	NM_029961	77706.0	Mm.261496	NM_029961	ENSMUSG00000072791	Abcb5	9230106F14Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-66871011-2	chr16	66870511	66871511	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178721, intron 3 of 9)	RMER6A|LTR|ERVK	213893.0	NR_040512	75501.0	Mm.394300	NR_040512	ENSMUSG00000092599	1700010K23Rik	-	RIKEN cDNA 1700010K23 gene	ncRNA	6.5	0.0	0.0	2.0	0.0	0.0
Merged-chr11-119260571-2	chr11	119260071	119261071	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175430, intron 17 of 18)	intron (NM_175430, intron 17 of 18)	-7392.0	NM_001159324	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	0.0	1.0	0.5	0.0	0.0	3.5
Merged-chr11-31814707-1	chr11	31814207	31815207	+	631.0	f1_c57bl6.idr	intron (NR_102312, intron 1 of 4)	intron (NR_102312, intron 1 of 4)	9840.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	3.0	1.5	3.5	10.5	6.0	1.0
Merged-chr1-36066427-1	chr1	36065927	36066927	+	631.0	f0_balb.idr	Intergenic	Intergenic	-1973.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112652947-2	chr12	112652447	112653447	+	631.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001165894)	TTS (NM_001165894)	6404.0	NR_105904	102465566.0		NR_105904	ENSMUSG00000098380	Mir6939	Gm27498|mmu-mir-6939	microRNA 6939	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17432775-2	chr16	17432275	17433275	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-19210.0	NM_001277231	12929.0	Mm.21048	NM_007764	ENSMUSG00000006134	Crkl	1110025F07Rik|AA589403|AI325100|Crkol	v-crk avian sarcoma virus CT10 oncogene homolog-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115281815-1	chr5	115281315	115282315	+	631.0	f1_c57bl6.idr	intron (NM_026504, intron 1 of 6)	Tigger6a|DNA|TcMar-Tigger	2113.0	NM_026504	52064.0	Mm.290142	NM_026504	ENSMUSG00000041733	Coq5	1810014G04Rik|D5Ertd33e	coenzyme Q5 methyltransferase	protein-coding	31.0	83.0	50.0	6.0	55.0	48.5
Merged-chr1-191192758-2	chr1	191192258	191193258	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9425.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-143655889-2	chr1	143655389	143656389	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145991, intron 10 of 16)	PB1D10|SINE|Alu	15192.0	NM_020025	26878.0	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122903711-2	chr7	122903211	122904211	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	66748.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-66457366-2	chr8	66456866	66457866	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 7 of 7)	intron (NM_175188, intron 7 of 7)	29164.0	NM_025465	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43525577-1	chr4	43525077	43526077	+	631.0	f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-2023.0	NM_001277875	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	3.0	2.5	0.5	0.0	0.0	0.5
Merged-chr10-20130680-2	chr10	20130180	20131180	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 25 of 29)	PB1D10|SINE|Alu	-18240.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-122903897-2	chr4	122903397	122904397	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17821.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191255438-2	chr1	191254938	191255938	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	30984.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18073536-2	chr16	18073036	18074036	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011172, intron 12 of 13)	intron (NM_011172, intron 12 of 13)	7133.0	NM_001289813	13353.0	Mm.27155	NM_010047	ENSMUSG00000003531	Dgcr6	-	DiGeorge syndrome critical region gene 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80943561-2	chr12	80943061	80944061	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045057, intron 1 of 2)	B1_Mur1|SINE|Alu	1838.0	NR_045057	100504661.0	Mm.442322	NR_045057	ENSMUSG00000112880	Gm20337	-	predicted gene, 20337	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22592829-2	chr8	22592329	22593329	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011696, intron 1 of 8)	intron (NM_011696, intron 1 of 8)	984.0	NM_001198998	22335.0	Mm.227704	NM_011696	ENSMUSG00000008892	Vdac3	-	voltage-dependent anion channel 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81596048-2	chr10	81595548	81596548	+	631.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001346695, exon 5 of 14)	exon (NM_001346695, exon 5 of 14)	1319.0	NM_001359135	114606.0	Mm.206764	NM_053254	ENSMUSG00000034758	Tle6	1810057E06Rik|Grg6	transducin-like enhancer of split 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23966340-1	chr17	23965840	23966840	+	631.0	f1_c57bl6.idr	Intergenic	Intergenic	8890.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	14.5	72.0	35.0	19.0	64.0	28.0
Merged-chr11-69904096-2	chr11	69903596	69904596	+	631.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001291119, exon 3 of 28)	exon (NM_001291119, exon 3 of 28)	2280.0	NM_001013414	216860.0	Mm.268347	NM_001013414	ENSMUSG00000047284	Neurl4	-	neuralized E3 ubiquitin protein ligase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79506326-2	chr10	79505826	79506826	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24764.0	NR_105874	102465548.0		NR_105874	ENSMUSG00000098414	Mir6909	Gm27727|mmu-mir-6909	microRNA 6909	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-140665360-1	chr3	140664860	140665860	+	631.0	f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	546995.0	NM_008811	18598.0	Mm.4223	NM_008811	ENSMUSG00000047674	Pdha2	Pdhal	pyruvate dehydrogenase E1 alpha 2	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr8-67956770-1	chr8	67956270	67957270	+	631.0	f0_balb.idr	intron (NM_177698, intron 3 of 14)	intron (NM_177698, intron 3 of 14)	17804.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56757027-2	chr19	56756527	56757527	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34655.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125510759-1	chr6	125510259	125511259	+	631.0	f1_c57bl6.idr	Intergenic	Intergenic	-15999.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	0.0	0.5	2.0	0.0	0.0	1.0
Merged-chr1-130713991-2	chr1	130713491	130714491	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162415, intron 3 of 15)	intron (NM_001162415, intron 3 of 15)	585.0	NM_001162416	18640.0	Mm.249861	NM_008825	ENSMUSG00000026409	Pfkfb2	4930568D07Rik	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167418405-2	chr2	167417905	167418905	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3305.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21651966-3	chr16	21651467	21652467	+	631.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001001881, exon 2 of 2)	3' UTR (NM_001001881, exon 2 of 2)	42698.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-64660706-1	chr11	64660206	64661206	+	631.0	f1_c57bl6.idr	Intergenic	Intergenic	-224032.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	1.0	8.0	11.0	11.0	13.5	5.0
Merged-chr16-26349011-1	chr16	26348511	26349511	+	631.0	f0_balb.idr	Intergenic	Intergenic	22828.0	NM_016674	12737.0	Mm.289441	NM_016674	ENSMUSG00000022512	Cldn1	AI596271	claudin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129114210-1	chr6	129113710	129114710	+	631.0	f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-2308.0	NR_073569	724020.0	Mm.424965	NR_073569		Klrb1-ps1	Nkrp1e	killer cell lectin-like receptor subfamily B member 1, pseudogene 1	pseudo	0.5	4.5	4.5	7.5	3.5	3.5
Merged-chr11-4976593-3	chr11	4976087	4977087	+	631.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243043, intron 1 of 22)	MLT2F|LTR|ERVL	-10237.0	NM_001355659	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109476657-2	chr11	109476157	109477157	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028710, intron 1 of 13)	intron (NM_028710, intron 1 of 13)	-3061.0	NM_001029842	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	0.0	1.0	0.5	0.0	0.0	0.5
Merged-chr9-89255866-2	chr9	89255366	89256366	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	44482.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-5336719-1	chr5	5336219	5337219	+	631.0	f0_c57.idr	intron (NM_011074, intron 2 of 14)	L1MB8|LINE|L1	43532.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	25.5	36.5	29.5	22.0	30.5	20.5
Merged-chr8-127941144-1	chr8	127940644	127941644	+	631.0	f1_balb.idr	Intergenic	Intergenic	337081.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0.0	5.5	0.0	0.0	0.0	0.0
Merged-chr13-111967780-2	chr13	111967329	111968329	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99893.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	64.0	43.0	76.0	70.0	128.0	96.0
Merged-chr5-117614484-2	chr5	117613984	117614984	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 4 of 19)	intron (NM_001312914, intron 4 of 19)	200482.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25428734-3	chr15	25428238	25429238	+	631.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027376, intron 1 of 1)	intron (NR_027376, intron 1 of 1)	14546.0	NR_027376	432939.0	Mm.146555	NM_001013791		Gm5468	100040583|EG432939	predicted gene 5468	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165640885-2	chr1	165640385	165641385	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6344.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37996310-1	chr1	37995810	37996810	+	631.0	f0_balb.idr	intron (NM_172054, intron 1 of 4)	MTD|LTR|ERVL-MaLR	898.0	NM_172054	98258.0	Mm.28438	NM_172054	ENSMUSG00000058407	Txndc9	AI098020|APACD	thioredoxin domain containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-124177932-2	chr10	124177432	124178432	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-291142.0	NR_028310	75030.0	Mm.159403	NR_028310	ENSMUSG00000112364	4930503E24Rik	-	eukaryotic translation initiation factor 3, subunit I pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167081892-2	chr2	167081392	167082392	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16599.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60730746-2	chr18	60730229	60731229	+	630.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	2412.0	NM_001348102	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	23.5	16.0	23.0	32.0	43.0	24.0
Merged-chr12-69752182-3	chr12	69751624	69752624	+	630.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183294, intron 7 of 9)	intron (NM_183294, intron 7 of 9)	11820.0	NR_030450	751538.0		NR_030450	ENSMUSG00000076065	Mir681	Mirn681|mmu-mir-681	microRNA 681	ncRNA	8.0	0.0	0.0	0.0	1.0	2.0
Merged-chr2-26465353-2	chr2	26464853	26465853	+	630.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_008714, exon 28 of 34)	exon (NM_008714, exon 28 of 34)	4766.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-140122947-2	chr7	140122447	140123447	+	630.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-2710.0	NM_001346725	212503.0	Mm.486735	NM_153783	ENSMUSG00000025464	Paox	2410012F02Rik|AI118225|Pao	polyamine oxidase (exo-N4-amino)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144049358-2	chr3	144048858	144049858	+	630.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	152974.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120365078-2	chr8	120364578	120365578	+	630.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123788.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53319134-2	chr19	53318634	53319634	+	630.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	intron (NM_001360348, intron 1 of 5)	7689.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128771917-2	chr2	128771448	128772448	+	630.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 9 of 18)	intron (NM_008587, intron 9 of 18)	-46355.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	25.0	39.5	32.0	7.0	29.5	40.5
Merged-chr7-107566012-3	chr7	107565505	107566505	+	630.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1428.0	NM_172907	244198.0	Mm.77425	NM_172907	ENSMUSG00000051041	Olfml1	6720478C22|AV321997|BC047207|MVAL564|ONT2|mONT2	olfactomedin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11817278-2	chr19	11816778	11817778	+	630.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	2125.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	17.0	58.0	26.0	46.0	70.0	57.0
Merged-chr14-31232545-2	chr14	31232045	31233045	+	630.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14672.0	NM_001025379	218877.0	Mm.27812	NM_001025379	ENSMUSG00000021904	Sema3g	AK129018	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34472060-2	chr1	34471560	34472560	+	630.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011206, intron 11 of 14)	intron (NM_011206, intron 11 of 14)	12314.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31099529-2	chr3	31099029	31100029	+	630.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039090, intron 2 of 6)	intron (NM_001039090, intron 2 of 6)	4471.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95818873-2	chr10	95818373	95819373	+	630.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121790.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-121059229-2	chr7	121058729	121059729	+	630.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_021554, intron 4 of 4)	B4A|SINE|B4	15301.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17862430-1	chr17	17861930	17862930	+	630.666687	f0_balb.idr	Intergenic	Intergenic	-7242.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	8.0	21.5	15.5	10.0	28.5	19.5
Merged-chr14-73442852-2	chr14	73442352	73443352	+	630.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57563.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4264352-2	chr18	4263852	4264852	+	630.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88601.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24053523-2	chr5	24053021	24054021	+	630.666626	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22831.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	6.5	18.0	19.5	16.5	16.0	10.0
Merged-chr4-41119123-2	chr4	41118623	41119623	+	630.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_139236, intron 15 of 25)	intron (NM_139236, intron 15 of 25)	5216.0	NM_139236	230082.0	Mm.285797	NM_139236	ENSMUSG00000028430	Nol6	AA410091|Nrap	nucleolar protein family 6 (RNA-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60778654-2	chr10	60778154	60779154	+	630.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_029770, intron 5 of 16)	intron (NM_029770, intron 5 of 16)	-25872.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53263164-2	chr18	53262664	53263664	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	17502.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39169543-2	chr18	39169043	39170043	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 11 of 21)	intron (NM_001361073, intron 11 of 21)	176398.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	4.5	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105060206-2	chr3	105059706	105060706	+	630.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6638.0	NM_029228	75269.0	Mm.307994	NM_029228	ENSMUSG00000051788	4930564D02Rik	-	RIKEN cDNA 4930564D02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8750992-2	chr19	8750492	8751492	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019829, intron 9 of 9)	intron (NM_019829, intron 9 of 9)	5977.0	NR_132423	102640359.0	Mm.440831	NR_132423		1700023D09Rik	AV208457	RIKEN cDNA 1700023D09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102400877-2	chr11	102400377	102401377	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252347, intron 9 of 10)	intron (NM_001252347, intron 9 of 10)	4110.0	NR_105895	102465561.0		NR_105895	ENSMUSG00000098774	Mir6930	Gm27436|mmu-mir-6930	microRNA 6930	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9427997-2	chr3	9427497	9428497	+	630.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133218, exon 9 of 9)	3' UTR (NM_133218, exon 9 of 9)	24919.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99113673-2	chr9	99113173	99114173	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 2 of 23)	intron (NM_029094, intron 2 of 23)	26538.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	2.5	0.0	0.0	2.5	0.0	0.0
Merged-chr12-51864374-2	chr12	51863874	51864874	+	630.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34838.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-19007821-2	chr9	19007321	19008321	+	630.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	19831.0	NM_001011823	258074.0	Mm.379445	NM_001011823	ENSMUSG00000095525	Olfr834	MOR153-2|MOR153-4_p	olfactory receptor 834	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81104079-2	chr10	81103579	81104579	+	630.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_049187)	promoter-TSS (NR_049187)	-537.0	NR_049187	100885826.0		NR_049187	ENSMUSG00000093498	Mir5615-2	Gm23367|mir-5615-2|mmu-mir-5615-2	microRNA 5615-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141270663-2	chr7	141270163	141271163	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028069, intron 12 of 13)	B4|SINE|B4	-4239.0	NM_001252600	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109737187-1	chr8	109736687	109737687	+	630.5	f0_balb.idr	intron (NM_001080930, intron 1 of 3)	intron (NM_001080930, intron 1 of 3)	552.0	NM_001080930	52335.0	Mm.276770	NM_001080930	ENSMUSG00000069895	Atxn1l	AW558552|Boat|C330011L24Rik|D6Mgi37|D8Ertd587e	ataxin 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39266366-2	chr6	39265866	39266866	+	630.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59593.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69777179-2	chr8	69776697	69777697	+	630.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-2286.0	NM_177899	330788.0	Mm.41364	NM_177899	ENSMUSG00000043090	Zfp866	9830167H18Rik|AI875089|C85843|D330038O06Rik	zinc finger protein 866	protein-coding	0.0	3.0	8.5	0.0	2.5	1.0
Merged-chr3-108380897-2	chr3	108380397	108381397	+	630.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026831)	TTS (NM_026831)	2844.0	NR_040560	100038453.0	Mm.214328	NR_040560	ENSMUSG00000074281	Gm12522	-	predicted gene 12522	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16094784-2	chr7	16094284	16095284	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001099277, intron 13 of 15)	intron (NM_001099277, intron 13 of 15)	-3796.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-38146444-2	chr3	38145944	38146944	+	630.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61675.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101639903-2	chr11	101639403	101640403	+	630.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	11954.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122869881-2	chr8	122869381	122870381	+	630.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21507.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76289462-2	chr15	76288962	76289962	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028852, intron 4 of 4)	B1F|SINE|Alu	1506.0	NR_037240	100526548.0		NR_037240	ENSMUSG00000093169	Mir3079	mmu-mir-3079	microRNA 3079	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19752817-2	chr7	19752317	19753317	+	630.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3244.0	NM_001159724	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3667869-2	chr8	3667369	3668369	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026985, intron 5 of 6)	B4A|SINE|B4	2107.0	NM_026985	69189.0	Mm.175176	NM_026985	ENSMUSG00000013974	Mcemp1	1810033B17Rik	mast cell expressed membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-125626643-2	chr2	125626143	125627143	+	630.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_199022)	TTS (NM_199022)	-1530.0	NM_001081091	99100.0	Mm.330545	NM_001081091	ENSMUSG00000068394	Cep152	AI851464|mKIAA0912	centrosomal protein 152	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10882668-2	chr16	10882168	10883168	+	630.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	32129.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34203589-2	chr17	34203089	34204089	+	630.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011530)	promoter-TSS (NM_011530)	-890.0	NM_011530	21355.0	Mm.14814	NM_011530	ENSMUSG00000024339	Tap2	ABC18|AI462429|APT2|Abcb3|Ham-2|Ham2|MTP2|PSF2|RING11|Tap-2|Y1|jas	transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89324338-2	chr6	89323838	89324838	+	630.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008881, exon 25 of 32)	exon (NM_008881, exon 25 of 32)	38275.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-62847634-2	chr5	62847126	62848126	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 6 of 8)	intron (NM_001170705, intron 6 of 8)	33803.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	81.5	137.5	130.5	79.0	170.0	150.0
Merged-chr1-43475668-2	chr1	43475168	43476168	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	29917.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-127144518-2	chr6	127144018	127145018	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009829, intron 3 of 4)	intron (NM_009829, intron 3 of 4)	-4871.0	NR_040274	77558.0	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-150663900-2	chr5	150663400	150664400	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362416, intron 1 of 7)	RLTR1D|LTR|ERV1	1712.0	NM_001362416	381695.0	Mm.246934	NM_201369	ENSMUSG00000029655	N4bp2l2	2700092H06Rik|Gm38758|zag1	NEDD4 binding protein 2-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75382500-2	chr18	75382000	75383000	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042660, intron 3 of 3)	intron (NM_001042660, intron 3 of 3)	15135.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88641213-2	chr17	88640713	88641713	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029858, intron 2 of 3)	intron (NM_029858, intron 2 of 3)	14658.0	NM_029858	77057.0	Mm.482203	NM_029858	ENSMUSG00000033855	Ston1	4921524J06Rik|C86231|Salf|Sblf	stonin 1	protein-coding	0.0	0.0	0.0	0.0	1.0	2.0
Merged-chr2-145673359-2	chr2	145672859	145673859	+	630.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR48|LTR|ERV1	-27836.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98743089-2	chr7	98742589	98743589	+	630.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39842.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86695006-2	chr11	86694506	86695506	+	630.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001356393, exon 33 of 33)	3' UTR (NM_001356393, exon 33 of 33)	10925.0	NM_001098810	217057.0	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-9032252-2	chr12	9031752	9032752	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029321, intron 1 of 2)	Lx8|LINE|L1	2255.0	NM_029321	75516.0	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63394570-2	chr4	63394070	63395070	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 3 of 21)	intron (NM_001045514, intron 3 of 21)	3670.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34540536-2	chr17	34540036	34541036	+	630.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23184.0	NM_030747	624681.0	Mm.471592	NM_030747	ENSMUSG00000092618	Btnl6	EG624681|Gm6519|NG13	butyrophilin-like 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108080217-2	chr3	108079717	108080717	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289719, intron 5 of 18)	intron (NM_001289719, intron 5 of 18)	5185.0	NM_001346665	109674.0	Mm.274335	NM_028779	ENSMUSG00000027889	Ampd2	1200014F01Rik|AI552571|Ampd-2|m4521Dajl	adenosine monophosphate deaminase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138913489-2	chr4	138912976	138913976	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028453, intron 1 of 7)	CpG	471.0	NM_028453	73162.0	Mm.238081	NM_028453	ENSMUSG00000041161	Otud3	3110030K17Rik	OTU domain containing 3	protein-coding	8.0	17.5	14.0	8.0	7.0	2.5
Merged-chr15-7204275-2	chr15	7203775	7204775	+	630.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63733.0	NM_013584	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111759389-2	chr12	111758889	111759889	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361610, intron 1 of 14)	intron (NM_001361610, intron 1 of 14)	521.0	NM_001025361	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-149164720-2	chr5	149164220	149165220	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_015478, intron 1 of 2)	RSINE1|SINE|B4	-8528.0	NR_028061	667410.0	Mm.441522	NR_028061		Gm8615	EG667410	glucosamine-6-phosphate deaminase 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90202332-2	chr9	90201832	90202832	+	630.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_194334, exon 13 of 13)	3' UTR (NM_194334, exon 13 of 13)	39354.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0.0	2.5	0.5	0.0	0.0	1.0
Merged-chr17-31294891-2	chr17	31294391	31295391	+	630.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153062)	promoter-TSS (NM_153062)	-592.0	NM_153062	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27714875-2	chr2	27714375	27715375	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	4292.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-86591538-2	chr9	86591035	86592035	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008615, intron 12 of 13)	B4A|SINE|B4	19482.0	NM_027100	69519.0	Mm.272517	NM_027100	ENSMUSG00000032417	Rwdd2a	1700030C20Rik|AI848608|Rwdd2	RWD domain containing 2A	protein-coding	7.5	0.5	0.0	4.5	0.0	0.0
Merged-chr13-73771057-2	chr13	73770557	73771557	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 1 of 24)	intron (NM_001360694, intron 1 of 24)	7360.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69790571-2	chr8	69790071	69791071	+	630.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133224)	promoter-TSS (NM_133224)	-592.0	NM_133224	170759.0	Mm.186066	NM_133224	ENSMUSG00000031862	Atp13a1	Atp13a|Cgi152|catp	ATPase type 13A1	protein-coding	3.0	1.5	7.0	0.0	5.5	10.5
Merged-chr12-85586172-2	chr12	85585672	85586672	+	630.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12933.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105020960-2	chr5	105020460	105021460	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029509, intron 5 of 9)	L1_Mus2|LINE|L1	32601.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-15463456-2	chr5	15462967	15463967	+	630.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	65755.0	NM_001310449	100861755.0	Mm.382859	NM_001310449	ENSMUSG00000106445	Gm21190	-	predicted gene, 21190	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-129994084-2	chr5	129993584	129994584	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357025, intron 8 of 10)	ID_B1|SINE|B4	8965.0	NM_010368	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	0.0	0.0	0.0	2.5	0.0	0.0
Merged-chr11-59183004-2	chr11	59182504	59183504	+	630.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175452)	promoter-TSS (NM_175452)	-178.0	NM_175452	118454.0	Mm.40016	NM_080454	ENSMUSG00000043448	Gjc2	B230382L12Rik|Cx47|Gja12	gap junction protein, gamma 2	protein-coding	0.0	0.0	0.0	0.0	3.0	1.0
Merged-chr5-135189969-2	chr5	135189469	135190469	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011714, intron 1 of 18)	intron (NM_011714, intron 1 of 18)	2646.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97850754-3	chr11	97850263	97851263	+	630.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9983.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	4.5	2.5	0.0	2.0	0.0	0.0
Merged-chr6-117168628-3	chr6	117168200	117169200	+	630.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021704, exon 1 of 3)	exon (NM_021704, exon 1 of 3)	165.0	NM_021704	20315.0	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152103435-2	chr2	152102935	152103935	+	630.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-2089.0	NM_029688	76650.0	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117709405-2	chr11	117708905	117709905	+	630.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 3 of 21)	intron (NM_198022, intron 3 of 21)	55116.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116094306-3	chr7	116093814	116094814	+	630.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019772, intron 1 of 4)	intron (NM_019772, intron 1 of 4)	934.0	NM_019772	56372.0	Mm.24231	NM_019772	ENSMUSG00000030663	1110004F10Rik	Smacp|Smap|sid2057|sid2057p	RIKEN cDNA 1110004F10 gene	protein-coding	0.5	4.0	1.5	0.5	1.5	0.0
Merged-chr19-53434053-1	chr19	53433553	53434553	+	630.333313	f1_balb.idr	Intergenic	Intergenic	30743.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	0.0	0.0	2.0	1.0	0.0	1.5
Merged-chr5-139727626-2	chr5	139727126	139728126	+	630.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_174850, intron 1 of 16)	intron (NM_174850, intron 1 of 16)	8707.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	32.0	86.0	34.0	6.5	45.0	29.5
Merged-chr8-44941688-3	chr8	44941194	44942194	+	630.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8514.0	NM_001081286	14107.0	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT atypical cadherin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79367512-3	chr8	79367029	79368029	+	630.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 2 of 6)	intron (NM_008539, intron 2 of 6)	31939.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	1.0	0.0	1.0	0.0	0.0	0.5
Merged-chr1-154003873-1	chr1	154003373	154004373	+	630.333313	f0_balb.idr	Intergenic	Intergenic	103944.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115546963-2	chr5	115546463	115547463	+	630.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 6 of 10)	intron (NM_011223, intron 6 of 10)	-12504.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr16-75982241-3	chr16	75981734	75982734	+	630.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	-18550.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122169752-3	chr3	122169264	122170264	+	630.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007378, intron 44 of 49)	intron (NM_007378, intron 44 of 49)	-75793.0	NM_008129	14630.0	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173366189-4	chr1	173365633	173366633	+	630.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053199, intron 1 of 8)	intron (NM_053199, intron 1 of 8)	1562.0	NM_053199	94332.0	Mm.330524	NM_053199	ENSMUSG00000005338	Cadm3	BIgR|Igsf4b|Necl-1|Necl1|SynCAM3|Tsll1	cell adhesion molecule 3	protein-coding	0.0	0.0	0.0	1.0	0.0	1.0
Merged-chr7-126375835-2	chr7	126375335	126376335	+	630.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_045537, intron 2 of 12)	intron (NR_045537, intron 2 of 12)	2099.0	NM_023712	73658.0	Mm.11112	NM_023712	ENSMUSG00000030741	Spns1	2210013K02Rik|Spin1|Spinl	spinster homolog 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-14545963-1	chr17	14545463	14546463	+	630.166687	f0_c57.idr	Intergenic	Intergenic	-147021.0	NR_027986	74917.0	Mm.32228	NM_183107		4930474M22Rik	-	RIKEN cDNA 4930474M22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-45736647-2	chr11	45736147	45737147	+	630.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71436.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148375640-4	chr2	148375209	148376209	+	630.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19668.0	NM_009219	20608.0	Mm.35324	NM_009219	ENSMUSG00000037014	Sstr4	Smstr4|sst4	somatostatin receptor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36038595-2	chr18	36038095	36039095	+	630.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167891, intron 3 of 9)	intron (NM_001167891, intron 3 of 9)	-67608.0	NR_015571	74966.0	Mm.379238	NM_030089		4930471G03Rik	1700007N01Rik	RIKEN cDNA 4930471G03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38335353-2	chr18	38334853	38335853	+	630.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011937, intron 2 of 6)	intron (NM_011937, intron 2 of 6)	3640.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59645350-2	chr15	59644850	59645850	+	630.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-3304.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84744771-2	chr8	84744271	84745271	+	630.116699	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081982, intron 2 of 9)	intron (NM_001081982, intron 2 of 9)	29598.0	NM_001081981	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	16.5	18.5	11.5	9.0	19.5	9.5
Merged-chr10-81345140-2	chr10	81344640	81345640	+	630.099976	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010440)	TTS (NM_010440)	-1874.0	NM_148951	209047.0	Mm.218755	NM_148951	ENSMUSG00000034872	Gipc3	Ahl5|Rgs19ip3	GIPC PDZ domain containing family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-137577012-5	chr6	137576538	137577538	+	630.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271588, intron 1 of 20)	intron (NM_001271588, intron 1 of 20)	-6029.0	NM_001271587	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39518606-2	chr18	39518106	39519106	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31361.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27229858-2	chr7	27229358	27230358	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1261.0	NM_181593	233011.0	Mm.30963	NM_181593	ENSMUSG00000003752	Itpkc	9130023N17Rik	inositol 1,4,5-trisphosphate 3-kinase C	protein-coding	5.0	9.5	1.5	2.0	8.0	1.0
Merged-chr19-40629734-2	chr19	40629234	40630234	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	17368.0	NM_001304721	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	26.5	78.0	83.0	45.5	79.0	58.0
Merged-chr1-106392198-2	chr1	106391698	106392698	+	630.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133821, exon 17 of 17)	exon (NM_133821, exon 17 of 17)	154433.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30544581-1	chr13	30544081	30545081	+	630.0	f0_balb.idr	intron (NM_025710, intron 1 of 1)	intron (NM_025710, intron 1 of 1)	735.0	NM_025710	66694.0	Mm.181933	NM_025710	ENSMUSG00000038462	Uqcrfs1	4430402G14Rik|AI875505	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr11-106206831-3	chr11	106206294	106207294	+	630.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026009, intron 6 of 12)	intron (NM_026009, intron 6 of 12)	9573.0	NM_026009	67163.0	Mm.22109	NM_026009	ENSMUSG00000078622	Ccdc47	2610204L23Rik|C88307|asp4|calumin	coiled-coil domain containing 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87647969-2	chr1	87647469	87648469	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	(CA)n|Simple_repeat|Simple_repeat	27657.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-33630250-1	chr5	33629750	33630750	+	630.0	f0_balb.idr	promoter-TSS (NM_178390)	promoter-TSS (NM_178390)	-615.0	NM_001359463	74504.0	Mm.294695	NM_178390	ENSMUSG00000037339	Fam53a	2410018C17Rik|5430419M09Rik|Dntnp	family with sequence similarity 53, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-87638437-2	chr4	87637937	87638937	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	167886.0	NM_001286158	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106370527-1	chr9	106370027	106371027	+	630.0	f1_c57bl6.idr	intron (NM_153459, intron 1 of 2)	MIRc|SINE|MIR	1895.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	27.5	81.5	35.0	21.5	109.0	53.0
Merged-chr19-56602081-2	chr19	56601581	56602581	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53820.0	NM_025811	66866.0	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-38035621-2	chr5	38035121	38036121	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3609.0	NM_001289536	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	0.0	0.0	1.0	3.5	0.0	3.0
Merged-chr15-79740781-2	chr15	79740281	79741281	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194342, intron 1 of 16)	intron (NM_194342, intron 1 of 16)	1755.0	NM_194342	223697.0	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	0.0	2.5	0.0	0.5	0.5	5.0
Merged-chr15-79931216-2	chr15	79930715	79931715	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144811, intron 1 of 6)	intron (NM_144811, intron 1 of 6)	1431.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	7.5	22.0	0.0	0.0	2.0	2.0
Merged-chr3-84710073-2	chr3	84709573	84710573	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43881.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-54362374-2	chr3	54361874	54362874	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198765, intron 1 of 21)	C-rich|Low_complexity|Low_complexity	1267.0	NM_015784	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	2.5	0.0	1.0	0.0	2.0	3.5
Merged-chr2-180173405-1	chr2	180172905	180173905	+	630.0	f1_c57bl6.idr	intron (NM_019822, intron 3 of 9)	intron (NM_019822, intron 3 of 9)	1817.0	NM_019822	56436.0	Mm.316654	NM_019822	ENSMUSG00000039041	Adrm1	1110063P18Rik|2510006J17Rik|AA408205|ARM-1|AU043535|Arm1|Gp110|Rpn13	adhesion regulating molecule 1	protein-coding	4.5	6.0	3.0	0.0	1.0	6.5
Merged-chr19-18624451-1	chr19	18623951	18624951	+	630.0	f0_balb.idr	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	7362.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120457697-1	chr5	120457197	120458197	+	630.0	f0_c57.idr	TTS (NM_133902)	TTS (NM_133902)	15066.0	NM_133902	257635.0	Mm.5162	NM_133902	ENSMUSG00000029596	Sdsl	4432411H13Rik|AI504310|SDH1|SDS-RS1|TDH	serine dehydratase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-60918580-1	chr1	60918080	60919080	+	630.0	f1_balb.idr	Intergenic	Intergenic	9555.0	NM_001281976	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0.0	4.0	3.0	0.0	1.5	1.0
Merged-chr17-35187484-1	chr17	35186984	35187984	+	630.0	f1_c57bl6.idr	intron (NM_010734, intron 1 of 3)	ID_B1|SINE|B4	956.0	NM_010734	16988.0	Mm.19379	NM_010734	ENSMUSG00000073412	Lst1	B144	leukocyte specific transcript 1	protein-coding	36.0	105.0	68.0	50.5	88.0	51.0
Merged-chr9-90260917-2	chr9	90260417	90261417	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	9852.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100051656-2	chr12	100051156	100052156	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	-60675.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47355337-1	chr14	47354837	47355837	+	630.0	f1_balb.idr	Intergenic	Intergenic	-18523.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	21.0	31.5	35.5	6.5	21.0	19.5
Merged-chr2-174480843-1	chr2	174480343	174481343	+	630.0	f1_balb.idr	Intergenic	MT2A|LTR|ERVL	-7902.0	NM_025531	66390.0	Mm.182294	NM_025531	ENSMUSG00000016257	Prelid3b	2310042G06Rik|AA407013|Slmo2	PRELI domain containing 3B	protein-coding	0.0	5.5	1.0	0.5	3.0	0.0
Merged-chr6-24990150-2	chr6	24989650	24990650	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-34025.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr1-64108839-2	chr1	64108339	64109339	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	12550.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100882476-1	chr7	100881976	100882976	+	630.0	f1_balb.idr	promoter-TSS (NR_037289)	promoter-TSS (NR_037289)	-67.0	NR_037289	100526508.0		NR_037289	ENSMUSG00000093296	Mir3102	mmu-mir-3102	microRNA 3102	ncRNA	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr15-103210157-1	chr15	103209657	103210657	+	630.0	f1_balb.idr	intron (NM_001358950, intron 2 of 4)	B2_Mm1t|SINE|B2	5195.0	NM_007626	12419.0	Mm.262059	NM_007626	ENSMUSG00000009575	Cbx5	2610029O15Rik|C75991|HP1|Hp1a|Hp1alpha	chromobox 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61743312-2	chr18	61742812	61743812	+	630.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178928, exon 11 of 19)	exon (NM_178928, exon 11 of 19)	16922.0	NR_029432	68982.0	Mm.441992	NR_029432	ENSMUSG00000098702	1500015A07Rik	-	RIKEN cDNA 1500015A07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-104044307-1	chr5	104043807	104044807	+	630.0	f0_balb.idr	Intergenic	Intergenic	-2557.0	NM_028794	74167.0	Mm.241484	NM_028794	ENSMUSG00000029310	Nudt9	1190002C07Rik|ADPR-PPase|AI462474	nudix (nucleoside diphosphate linked moiety X)-type motif 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85272383-1	chr1	85271883	85272883	+	630.0	f1_balb.idr	Intergenic	Intergenic	-1817.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181629904-1	chr2	181629404	181630404	+	630.0	f1_c57bl6.idr	intron (NM_133701, intron 6 of 20)	B1_Mm|SINE|Alu	28585.0	NM_133701	68879.0	Mm.292001	NM_133701	ENSMUSG00000002455	Prpf6	1190003A07Rik|2610031L17Rik|ANT-1|U5-102K	pre-mRNA splicing factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35518157-1	chr17	35517657	35518657	+	630.0	f1_c57bl6.idr	intron (NM_146248, intron 1 of 17)	intron (NM_146248, intron 1 of 17)	1041.0	NM_146248	240084.0	Mm.49544	NM_146248	ENSMUSG00000040312	Cchcr1	Hcr	coiled-coil alpha-helical rod protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr11-65778063-1	chr11	65777563	65778563	+	630.0	f1_c57bl6.idr	intron (NM_001316368, intron 1 of 10)	intron (NM_001316368, intron 1 of 10)	10296.0	NM_009157	26398.0	Mm.412922	NM_009157	ENSMUSG00000033352	Map2k4	JNKK1|MEK4|MKK4|PRKMK4|Sek1|Serk1	mitogen-activated protein kinase kinase 4	protein-coding	0.5	0.0	9.5	5.0	1.0	5.0
Merged-chr3-88638701-1	chr3	88638201	88639201	+	630.0	f1_c57bl6.idr	intron (NM_001198913, intron 12 of 21)	B1_Mm|SINE|Alu	14441.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	9.0	11.5	6.0	3.5	7.5	9.0
Merged-chr1-89454079-1	chr1	89453579	89454579	+	630.0	f0_balb.idr	promoter-TSS (NM_178119)	promoter-TSS (NM_178119)	-732.0	NM_178119	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-53220757-2	chr17	53220257	53221257	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	242564.0	NM_172497	211482.0	Mm.60887	NM_172497	ENSMUSG00000023931	Efhb	4921525D22Rik	EF hand domain family, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-104124889-2	chr12	104124389	104125389	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3107.0	NM_173024	271047.0	Mm.120265	NM_173024	ENSMUSG00000066364	Serpina3b	6A1|A030003A19Rik	serine (or cysteine) peptidase inhibitor, clade A, member 3B	protein-coding	5.5	1.5	8.0	2.5	5.5	9.0
Merged-chr11-117145010-2	chr11	117144510	117145510	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 7 of 16)	intron (NM_001166507, intron 7 of 16)	29838.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-90666309-1	chr11	90665809	90666809	+	630.0	f0_balb.idr	intron (NM_028011, intron 7 of 15)	intron (NM_028011, intron 7 of 15)	-3310.0	NM_001357547	71943.0	Mm.167868	NM_028011	ENSMUSG00000020541	Tom1l1	2310045L10Rik|C80573|Srcasm	target of myb1-like 1 (chicken)	protein-coding	4.5	8.0	0.5	9.0	7.5	2.5
Merged-chr12-99625579-2	chr12	99625079	99626079	+	630.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045288)	TTS (NR_045288)	2395.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-37849648-1	chr18	37849148	37850148	+	630.0	f0_balb.idr	intron (NM_007858, intron 26 of 26)	intron (NM_007858, intron 26 of 26)	5012.0	NR_105945	102465592.0		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-74960706-3	chr5	74960242	74961242	+	630.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045866, intron 2 of 4)	intron (NR_045866, intron 2 of 4)	11548.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	0.0	3.0	1.0	0.0	0.0	1.5
Merged-chr17-64726185-2	chr17	64725685	64726685	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 16 of 21)	intron (NM_008549, intron 16 of 21)	-40926.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86162174-1	chr15	86161674	86162674	+	630.0	f1_c57bl6.idr	intron (NM_145475, intron 3 of 12)	B2_Mm2|SINE|B2	-23554.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	6.0	2.5	0.5	3.0	3.0	8.0
Merged-chr10-39896619-2	chr10	39896119	39897119	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033628, intron 1 of 3)	MTC-int|LTR|ERVL-MaLR	2619.0	NR_033628	213332.0	Mm.484359	NR_033628		Mfsd4b4	AA474331	major facilitator superfamily domain containing 4B4	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99816954-2	chr15	99816454	99817454	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113545, intron 4 of 10)	B1_Mur1|SINE|Alu	3195.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	17.5	34.0	27.5	16.5	23.5	23.0
Merged-chr9-25590920-2	chr9	25590420	25591420	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 6 of 7)	intron (NM_026189, intron 6 of 7)	109323.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99105158-1	chr7	99104658	99105658	+	630.0	f1_c57bl6.idr	intron (NM_178635, intron 3 of 14)	AT_rich|Low_complexity|Low_complexity	35986.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	4.5	14.5	12.5	6.0	16.0	4.0
Merged-chr6-72881824-1	chr6	72881324	72882324	+	630.0	f0_balb.idr	intron (NM_019715, intron 1 of 6)	MTD|LTR|ERVL-MaLR	17468.0	NM_001347231	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114659844-1	chr5	114659344	114660344	+	630.0	f1_c57bl6.idr	Intergenic	B4|SINE|B4	-1423.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	5.0	6.5	13.0	0.0	2.5	0.5
Merged-chr15-72818819-2	chr15	72818319	72819319	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164641, intron 17 of 17)	intron (NM_001164641, intron 17 of 17)	-8495.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0.0	5.0	0.5	0.0	1.5	0.5
Merged-chr6-119378693-2	chr6	119378193	119379193	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_197985, intron 1 of 7)	L1MB4|LINE|L1	10041.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88726099-3	chr4	88725622	88726622	+	630.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-3614.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114661677-1	chr5	114661177	114662177	+	630.0	f1_balb.idr	Intergenic	RMER15|LTR|ERVL	-3256.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	19.0	38.5	27.5	18.0	76.0	38.0
Merged-chr1-72799971-2	chr1	72799471	72800471	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24509.0	NM_008342	16008.0	Mm.141936	NM_008342	ENSMUSG00000039323	Igfbp2	AI255832|IBP-2|Igfbp-2|mIGFBP-2	insulin-like growth factor binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17921053-2	chr16	17920553	17921553	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5994.0	NM_029469	195333.0	Mm.463003	NM_029469	ENSMUSG00000022738	Gsc2	4930568H22Rik|GSC-2|Gscl	goosecoid homebox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97312088-2	chr6	97311588	97312588	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 12 of 23)	intron (NM_145148, intron 12 of 23)	-59308.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	5.0	13.5	10.0	3.5	9.5	11.0
Merged-chr1-180847733-2	chr1	180847233	180848233	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-3418.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45110188-1	chr13	45109688	45110688	+	630.0	f1_c57bl6.idr	Intergenic	Intergenic	-108092.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	1.0	1.0	0.0	1.0	0.5	2.5
Merged-chr16-59679871-1	chr16	59679371	59680371	+	630.0	f1_balb.idr	intron (NM_007938, intron 15 of 17)	intron (NM_007938, intron 15 of 17)	-40462.0	NM_001347244	56297.0	Mm.392505	NM_019665	ENSMUSG00000022722	Arl6	1110018H24Rik|2210411E14Rik|BBS3	ADP-ribosylation factor-like 6	protein-coding	1.5	0.0	0.0	0.0	1.0	0.0
Merged-chr7-101389682-2	chr7	101389182	101390182	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 11 of 33)	PB1D9|SINE|Alu	4156.0	NM_027180	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-53773321-1	chr1	53772821	53773821	+	630.0	f1_c57bl6.idr	intron (NM_133810, intron 2 of 7)	intron (NM_133810, intron 2 of 7)	11894.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	51.5	107.0	92.5	32.0	54.0	43.5
Merged-chr1-133419587-2	chr1	133419087	133420087	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011439, intron 1 of 13)	intron (NM_011439, intron 1 of 13)	4625.0	NM_011439	20668.0	Mm.8575	NM_011439	ENSMUSG00000070643	Sox13	AA407916|AW259412|AW540933|Sox-13	SRY (sex determining region Y)-box 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132772146-2	chr7	132771646	132772646	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_212473, intron 2 of 4)	intron (NM_212473, intron 2 of 4)	4770.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93725667-2	chr1	93725167	93726167	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025920, intron 2 of 5)	intron (NM_025920, intron 2 of 5)	6259.0	NM_001310761	67026.0	Mm.272356	NM_025920	ENSMUSG00000026279	Thap4	2010320B01Rik	THAP domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130824951-2	chr4	130824451	130825451	+	630.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011520, exon 5 of 5)	3' UTR (NM_011520, exon 5 of 5)	32414.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22100272-2	chr16	22099772	22100772	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	MTE2b-int|LTR|ERVL-MaLR	63027.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19052354-1	chr10	19051854	19052854	+	630.0	f1_balb.idr	Intergenic	Intergenic	-36944.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160148929-2	chr2	160148429	160149429	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	132276.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155726524-1	chr2	155726024	155727024	+	630.0	f1_c57bl6.idr	intron (NM_145537, intron 3 of 10)	intron (NM_145537, intron 3 of 10)	2951.0	NM_145537	108687.0	Mm.273706	NM_145537	ENSMUSG00000038312	Edem2	9530090G24Rik|AI327354	ER degradation enhancer, mannosidase alpha-like 2	protein-coding	1.5	0.0	4.0	0.0	0.0	4.0
Merged-chr13-70609945-2	chr13	70609445	70610445	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144837, intron 11 of 18)	intron (NM_144837, intron 11 of 18)	27689.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-60851813-2	chr1	60851313	60852313	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57212.0	NM_009843	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3930762-2	chr11	3930262	3931262	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130458, intron 2 of 9)	intron (NM_001130458, intron 2 of 9)	1199.0	NM_001130459	21452.0	Mm.20948	NM_015749	ENSMUSG00000020432	Tcn2	AW208754|Tcn-2	transcobalamin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-12247996-1	chr12	12247496	12248496	+	630.0	f1_balb.idr	Intergenic	Intergenic	-14143.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	5.5	131.5	61.5	30.0	87.0	70.0
Merged-chr8-84224212-1	chr8	84223712	84224712	+	630.0	f1_balb.idr	exon (NM_172503, exon 8 of 14)	exon (NM_172503, exon 8 of 14)	12830.0	NM_172503	212168.0	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	0.0	7.5	5.0	1.0	0.0	5.0
Merged-chr16-37683886-2	chr16	37683386	37684386	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29518.0	NM_026610	68194.0	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-57073877-1	chr4	57073377	57074377	+	630.0	f1_c57bl6.idr	intron (NM_001355492, intron 11 of 24)	intron (NM_001355492, intron 11 of 24)	69279.0	NM_019427	54357.0	Mm.28217	NM_019427	ENSMUSG00000028434	Epb41l4b	6430543G08Rik|AA589614|AU021054|BB007528|D4Ertd346e|Ehm2|Epb4.1l4b|Lulu2	erythrocyte membrane protein band 4.1 like 4b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr3-51217183-1	chr3	51216683	51217683	+	630.0	f0_balb.idr	Intergenic	Intergenic	-7264.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58329443-1	chr11	58328943	58329943	+	630.0	f1_balb.idr	intron (NM_001256520, intron 1 of 2)	RLTR19|LTR|ERVK	896.0	NM_001256520	319475.0	Mm.72124	NM_178761	ENSMUSG00000049755	Zfp672	4930488P06Rik|4930511N19Rik|Znf672	zinc finger protein 672	protein-coding	24.0	75.0	75.0	22.0	61.5	29.5
Merged-chr11-80052732-2	chr11	80052232	80053232	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018776, intron 6 of 7)	ID_B1|SINE|B4	28259.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80681358-2	chr10	80680858	80681858	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-5065.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-28757433-1	chr13	28756933	28757933	+	630.0	f0_balb.idr	intron (NR_045053, intron 3 of 8)	intron (NR_045053, intron 3 of 8)	-46560.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94172134-1	chr8	94171634	94172634	+	630.0	f0_balb.idr	promoter-TSS (NM_008630)	promoter-TSS (NM_008630)	-484.0	NM_008630	17750.0	Mm.147226	NM_008630	ENSMUSG00000031762	Mt2	AA409533|MT-II|Mt-2	metallothionein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122289223-2	chr3	122288723	122289723	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	4480.0	NR_030439	791077.0		NR_030439	ENSMUSG00000076456	Mir760	Mirn760|mir-760|mmu-mir-760	microRNA 760	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69702112-2	chr3	69701612	69702612	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19943.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126467409-2	chr7	126466909	126467909	+	630.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_110346, exon 10 of 10)	non-coding (NR_110346, exon 10 of 10)	-4336.0	NM_007504	11937.0	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182956596-2	chr1	182956096	182957096	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016928, intron 1 of 3)	intron (NM_016928, intron 1 of 3)	1808.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	3.0	0.0	1.0	0.0	0.0	0.0
Merged-chr11-51579211-2	chr11	51578711	51579711	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153393, intron 27 of 28)	intron (NM_153393, intron 27 of 28)	-5546.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31067745-2	chr6	31067245	31068245	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4652.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59347545-2	chr2	59347045	59348045	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 17 of 20)	intron (NM_175464, intron 17 of 20)	39137.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89154269-2	chr15	89153769	89154769	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4663.0	NM_011161	19094.0	Mm.91969	NM_011161	ENSMUSG00000053137	Mapk11	P38b|Prkm11|Sapk2|Sapk2b|p38-2|p38beta|p38beta2	mitogen-activated protein kinase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-47079433-2	chr7	47078933	47079933	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163565, intron 12 of 13)	intron (NM_001163565, intron 12 of 13)	3791.0	NR_106023	102465639.0		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24713063-2	chr5	24712563	24713563	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081441, intron 4 of 5)	intron (NM_001081441, intron 4 of 5)	17617.0	NM_001081441	269633.0	Mm.392539	NM_026621	ENSMUSG00000055235	Wdr86	2810046M22Rik|BC059069	WD repeat domain 86	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109609222-2	chr8	109608722	109609722	+	630.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020046)	promoter-TSS (NM_020046)	-549.0	NM_020046	56749.0	Mm.23894	NM_020046	ENSMUSG00000031730	Dhodh	2810417D19Rik|AI834883	dihydroorotate dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103387263-1	chr14	103386763	103387763	+	630.0	f0_balb.idr	Intergenic	Intergenic	-40463.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92677320-2	chr1	92676820	92677820	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28479.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-40073002-1	chr8	40072502	40073502	+	630.0	f1_balb.idr	Intergenic	L1Md_F2|LINE|L1	213951.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	0.0	7.5	0.0	0.0	5.0	0.5
Merged-chr2-80110732-2	chr2	80110232	80111232	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	18239.0	NM_016744	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	6.0	0.0	0.0	5.5	0.0	0.0
Merged-chr2-73513896-3	chr2	73513412	73514412	+	630.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	15575.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122553958-2	chr5	122553457	122554457	+	629.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009879, intron 18 of 18)	intron (NM_009879, intron 18 of 18)	-51732.0	NR_027838	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	10.5	15.0	6.0	22.5	59.5	23.5
Merged-chr6-140622566-2	chr6	140622066	140623066	+	629.900024	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178803)	promoter-TSS (NM_178803)	-97.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102313366-3	chr7	102312876	102313876	+	629.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009287, intron 1 of 11)	intron (NM_009287, intron 1 of 11)	45552.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	11.5	11.5	7.5	2.5	4.0	8.5
Merged-chr4-117131028-2	chr4	117130528	117131528	+	629.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313916, intron 9 of 14)	intron (NM_001313916, intron 9 of 14)	2935.0	NM_013807	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	0.0	3.0	8.0	0.0	0.0	1.5
Merged-chr10-80319696-2	chr10	80319196	80320196	+	629.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025521, intron 1 of 1)	ID_B1|SINE|B4	852.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156581262-2	chr1	156580807	156581807	+	629.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 1 of 12)	MTD|LTR|ERVL-MaLR	22520.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	22.5	38.0	19.0	8.5	13.5	7.0
Merged-chr12-76541002-2	chr12	76540502	76541502	+	629.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	6923.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180858938-1	chr1	180858438	180859438	+	629.833313	f0_c57.idr	intron (NM_145943, intron 3 of 6)	ORR1B1|LTR|ERVL-MaLR	7787.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103537645-3	chr14	103537193	103538193	+	629.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022886, intron 5 of 30)	Lx8b|LINE|L1	24352.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4049800-2	chr19	4049300	4050300	+	629.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7579.0	NM_181796	14869.0	Mm.441542	NM_181796	ENSMUSG00000038155	Gstp2	GSTpiA|Gst-3|Gst3	glutathione S-transferase, pi 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-72326127-2	chr16	72325588	72326588	+	629.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-91761.0	NR_131115	319533.0	Mm.373754	NR_131115		8030451O07Rik	-	RIKEN cDNA 8030451O07 gene	ncRNA	2.0	2.0	0.0	0.0	2.0	0.0
Merged-chr6-134277154-2	chr6	134276683	134277683	+	629.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119146.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0.0	0.0	2.0	5.5	4.5	1.5
Merged-chr18-60502451-1	chr18	60501951	60502951	+	629.75	f0_balb.idr	promoter-TSS (NM_134133)	promoter-TSS (NM_134133)	-468.0	NM_134133	106878.0	Mm.273197	NM_134133	ENSMUSG00000038059	Smim3	2010002N04Rik|AI195350|AW561905|Nid67|cI-41	small integral membrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59127913-3	chr2	59127421	59128421	+	629.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 1 of 13)	intron (NM_001362394, intron 1 of 13)	32762.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16305052-3	chr1	16304560	16305560	+	629.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111272, intron 11 of 12)	intron (NM_001111272, intron 11 of 12)	199178.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-89051852-3	chr5	89051353	89052353	+	629.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359212, intron 3 of 22)	intron (NM_001359212, intron 3 of 22)	23887.0	NM_001359213	54403.0	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34624929-2	chr19	34624429	34625429	+	629.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_053217, intron 2 of 2)	intron (NM_053217, intron 2 of 2)	4882.0	NM_001362130	112419.0	Mm.440727	NM_053217	ENSMUSG00000067297	Ifit1bl2	2010002M12Rik|AW412491|Ifit1b	interferon induced protein with tetratricopeptide repeats 1B like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-36150496-2	chr13	36149996	36150996	+	629.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 1 of 5)	intron (NM_001039189, intron 1 of 5)	32853.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	2.5	1.0	1.5	0.0	8.0	0.5
Merged-chr13-115178343-3	chr13	115177821	115178821	+	629.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76357.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64192557-2	chr7	64192057	64193057	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018752, intron 1 of 13)	intron (NM_018752, intron 1 of 13)	7098.0	NM_018752	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117504261-2	chr5	117503762	117504762	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 2 of 19)	MTD|LTR|ERVL-MaLR	90260.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	1.0	3.0	0.0	1.0	0.0	0.0
Merged-chr18-61075847-2	chr18	61075347	61076347	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008809, intron 14 of 22)	L1Md_F2|LINE|L1	-29725.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56653522-2	chr19	56653022	56654022	+	629.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68850.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-15729746-2	chr6	15729246	15730246	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 2 of 4)	B1_Mm|SINE|Alu	9085.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-94611611-2	chr3	94611111	94612111	+	629.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28895.0	NM_029721	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	0.0	4.5	2.0	0.0	4.5	4.0
Merged-chr11-118105808-2	chr11	118105308	118106308	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167746, intron 18 of 80)	B2_Mm1t|SINE|B2	23411.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60540189-2	chr11	60539689	60540689	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172943, intron 1 of 3)	intron (NM_172943, intron 1 of 3)	2506.0	NM_172943	268420.0	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95437614-2	chr8	95437114	95438114	+	629.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2745.0	NM_008187	14894.0	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73805474-2	chr13	73804974	73805974	+	629.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011390, exon 18 of 24)	exon (NM_011390, exon 18 of 24)	41777.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-8419160-2	chr6	8418660	8419660	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302353, intron 4 of 4)	intron (NM_001302353, intron 4 of 4)	90001.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93486211-2	chr10	93485711	93486711	+	629.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2557.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	4.5	10.5	7.0	8.0	4.5	9.5
Merged-chr1-188811797-2	chr1	188811297	188812297	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021408, intron 50 of 70)	intron (NM_021408, intron 50 of 70)	196043.0	NM_001359577	226823.0	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81692210-2	chr15	81691710	81692710	+	629.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164320, exon 5 of 6)	exon (NM_001164320, exon 5 of 6)	5077.0	NM_001164320	214685.0	Mm.393287	NM_001164320	ENSMUSG00000063765	Chadl	AY100452|D930017K21Rik	chondroadherin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43531144-2	chr4	43530644	43531644	+	629.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011602)	TTS (NM_011602)	-7590.0	NM_001277875	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	0.0	1.0	0.0	1.0	0.0	4.0
Merged-chr15-64108712-2	chr15	64108212	64109212	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 24 of 28)	intron (NM_001276461, intron 24 of 28)	-48264.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0	0.5	1.0	1.0	12.0	0.0
Merged-chr17-78740515-1	chr17	78740015	78741015	+	629.5	f0_balb.idr	Intergenic	Intergenic	-3955.0	NM_011500	268980.0	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	6.5	0.0	4.0	17.0	5.5	13.0
Merged-chr12-35957388-2	chr12	35956888	35957888	+	629.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	31767.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr5-99377319-2	chr5	99376819	99377819	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-124392.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62195651-2	chr15	62195151	62196151	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 3 of 6)	intron (NR_132746, intron 3 of 6)	23800.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111741918-2	chr8	111741418	111742418	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009954, intron 1 of 6)	intron (NM_009954, intron 1 of 6)	1931.0	NM_009954	12927.0	Mm.3758	NM_009954	ENSMUSG00000031955	Bcar1	AI385681|Cas|Crkas	breast cancer anti-estrogen resistance 1	protein-coding	0.0	0.0	2.0	0.0	0.0	3.0
Merged-chr11-115648043-2	chr11	115647543	115648543	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 4 of 5)	intron (NM_001313936, intron 4 of 5)	-19748.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6626937-2	chr15	6626437	6627437	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_155272, intron 2 of 6)	intron (NR_155272, intron 2 of 6)	27366.0	NR_155272	102632231.0	Mm.444780	NR_155272		LOC102632231	-	uncharacterized LOC102632231	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30071282-2	chr16	30070782	30071782	+	629.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	5925.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-58491064-2	chr3	58490603	58491603	+	629.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-34718.0	NM_001005509	229317.0	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	1.5	6.5	0.5	3.0	4.5	1.5
Merged-chr6-29729730-2	chr6	29729236	29730236	+	629.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5761.0	NM_176996	319757.0	Mm.29279	NM_176996	ENSMUSG00000001761	Smo	E130215L21Rik|Smoh|bnb|smoothened	smoothened, frizzled class receptor	protein-coding	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77912551-2	chr9	77912053	77913053	+	629.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4812.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	6.0	24.0	7.0	5.5	14.5	9.5
Merged-chr16-95823908-2	chr16	95823408	95824408	+	629.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74805.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54771897-2	chr14	54771394	54772394	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 1 of 10)	(CA)n|Simple_repeat|Simple_repeat	9992.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	17.5	38.5	29.0	8.5	6.5	9.0
Merged-chr16-78574517-2	chr16	78574017	78575017	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025967, intron 2 of 4)	MIR|SINE|MIR	2171.0	NM_001252438	67102.0	Mm.37332	NM_025967	ENSMUSG00000022864	D16Ertd472e	1700010I10Rik|2310009O17Rik|E330003K22Rik|Eurl	DNA segment, Chr 16, ERATO Doi 472, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82130919-2	chr15	82130419	82131419	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_137170, intron 2 of 5)	intron (NR_137170, intron 2 of 5)	2944.0	NR_137170	76457.0	Mm.440373	NM_172428	ENSMUSG00000068114	Ccdc134	2310042L06Rik|AW208859	coiled-coil domain containing 134	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-36027586-2	chr19	36027086	36028086	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360298, intron 1 of 2)	L1Md_F2|LINE|L1	29774.0	NM_001360318	15566.0	Mm.254266	NM_008315	ENSMUSG00000024798	Htr7	5-HT-X|5-HT7	5-hydroxytryptamine (serotonin) receptor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120045179-2	chr8	120044679	120045679	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310635, intron 14 of 14)	intron (NM_001310635, intron 14 of 14)	52741.0	NM_001310635	78892.0	Mm.264680	NM_030209	ENSMUSG00000031825	Crispld2	1810049K24Rik|Lcrisp2|Lgl1|coffeecrisp	cysteine-rich secretory protein LCCL domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12940595-2	chr17	12940095	12941095	+	629.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153151)	promoter-TSS (NM_153151)	-199.0	NM_153151	224530.0	Mm.490312	NM_153151	ENSMUSG00000062480	Acat3	ACTL	acetyl-Coenzyme A acetyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67565842-2	chr5	67565342	67566342	+	629.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42041.0	NM_001033415	330096.0	Mm.442747	NM_001033415	ENSMUSG00000050010	Shisa3	D830007B15Rik	shisa family member 3	protein-coding	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr1-118514666-2	chr1	118514146	118515146	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359347, intron 20 of 40)	intron (NM_001359347, intron 20 of 40)	-55381.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	7.5	13.0	14.0	2.0	10.0	2.5
Merged-chr1-105158740-2	chr1	105158240	105159240	+	629.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-197267.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37680017-2	chr13	37679517	37680517	+	629.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-146021.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94786194-2	chr11	94785671	94786671	+	629.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3468.0	NM_001163172	544806.0	Mm.379774	NM_001034896	ENSMUSG00000075610	Tmem92	AU016430|Tmem92-ps	transmembrane protein 92	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101952685-2	chr5	101952185	101953185	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 8 of 66)	intron (NM_172882, intron 8 of 66)	117236.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	10.5	7.0	5.0	0.0	1.0	3.5
Merged-chr17-24533259-2	chr17	24532759	24533759	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177375, intron 1 of 8)	CpG	488.0	NM_177375	328778.0	Mm.266033	NM_177375	ENSMUSG00000079657	Rab26	A830020M03Rik	RAB26, member RAS oncogene family	protein-coding	0.0	0.5	0.0	8.0	0.0	5.5
Merged-chr8-25103132-4	chr8	25102621	25103621	+	629.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155282, intron 1 of 1)	CpG	942.0	NR_155282	74744.0	Mm.117802	NR_155282		5830408C22Rik	2700026D01Rik	RIKEN cDNA 5830408C22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87712823-2	chr1	87712323	87713323	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 23 of 26)	intron (NM_001110192, intron 23 of 26)	-43188.0	NM_029846	77040.0	Mm.272972	NM_029846	ENSMUSG00000026289	Atg16l1	1500009K01Rik|Apg16l|Atg16l|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31038247-2	chr2	31037747	31038747	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 11 of 15)	(TG)n|Simple_repeat|Simple_repeat	55968.0	NM_028846	74270.0	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64295947-2	chr5	64295447	64296447	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 11 of 18)	intron (NM_001289514, intron 11 of 18)	65590.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	12.5	26.5	23.5	14.0	4.0	24.5
Merged-chr8-34148296-2	chr8	34147811	34148811	+	629.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1572.0	NM_026609	68192.0	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	21.5	70.5	20.5	18.5	43.5	15.0
Merged-chr9-64960452-2	chr9	64959952	64960952	+	629.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175153)	promoter-TSS (NM_175153)	-380.0	NM_001077631	69882.0	Mm.272616	NM_175153	ENSMUSG00000034263	Ints14	2010321M09Rik|Vwa9	integrator complex subunit 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127462571-2	chr2	127462071	127463071	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111331, intron 4 of 7)	intron (NM_001111331, intron 4 of 7)	-18006.0	NM_029629	68126.0	Mm.288676	NM_029629	ENSMUSG00000027371	Fahd2a	1500003K14Rik|B430104H02Rik|Cgi-105|Fahd2	fumarylacetoacetate hydrolase domain containing 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77179062-2	chr18	77178562	77179562	+	629.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6785.0	NM_153124	225742.0	Mm.365178	NM_013666	ENSMUSG00000025425	St8sia5	ST8SiaV|Siat8e	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81086932-2	chr15	81086414	81087414	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	18133.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	5.5	7.0	4.0	0.0	3.5	4.0
Merged-chr12-85620105-2	chr12	85619605	85620605	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 2 of 3)	intron (NM_001205053, intron 2 of 3)	20087.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124114206-2	chr5	124113706	124114706	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347478, intron 5 of 6)	intron (NM_001347478, intron 5 of 6)	1885.0	NM_001347478	66627.0	Mm.7050	NM_025671	ENSMUSG00000023707	Ogfod2	1300006G11Rik|5730405M13Rik|AU041636|AW552395	2-oxoglutarate and iron-dependent oxygenase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69939561-2	chr11	69939061	69940061	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016875, intron 4 of 8)	intron (NM_016875, intron 4 of 8)	3233.0	NM_001347634	53422.0	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5771889-2	chr13	5771389	5772389	+	629.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86203.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4874480-2	chr16	4873980	4874980	+	629.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145359)	TTS (NM_145359)	5371.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94594744-2	chr16	94594244	94595244	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	Lx7|LINE|L1	-16675.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78402228-2	chr10	78401728	78402728	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010925, intron 11 of 12)	intron (NM_010925, intron 11 of 12)	6317.0	NR_105872	102465547.0		NR_105872	ENSMUSG00000098376	Mir6907	Gm27351|mmu-mir-6907	microRNA 6907	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-55537659-2	chr9	55537159	55538159	+	629.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-3490.0	NM_027397	104360.0	Mm.273996	NM_027397	ENSMUSG00000032318	Isl2	3110001N10Rik	insulin related protein 2 (islet 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-22111590-3	chr3	22111100	22112100	+	629.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	34948.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70778844-3	chr8	70778300	70779300	+	629.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_199308, exon 26 of 26)	3' UTR (NM_199308, exon 26 of 26)	1938.0	NR_029440	72093.0	Mm.271208	NR_029440		2010320M18Rik	-	RIKEN cDNA 2010320M18 gene	ncRNA	11.0	18.0	12.0	4.0	6.0	8.0
Merged-chr19-61059191-2	chr19	61058692	61059692	+	629.333374	f0_c57.idr|f1_c57bl6.idr	intron (NR_131953, intron 3 of 6)	RLTR12B|LTR|ERVK	81648.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	12.0	12.0	8.0	12.0	14.0	16.0
Merged-chr19-17364963-2	chr19	17364459	17365459	+	629.333374	f0_balb.idr|f1_balb.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	7885.0	NM_010265	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	6.5	0.0	13.5	4.0	4.5	13.0
Merged-chr3-82999237-2	chr3	82998742	82999742	+	629.333374	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-8482.0	NM_133862	99571.0	Mm.16422	NM_133862	ENSMUSG00000033860	Fgg	3010002H13Rik|AI256424	fibrinogen gamma chain	protein-coding	7.5	2.0	4.0	8.0	10.0	0.5
Merged-chr19-9974030-2	chr19	9973530	9974530	+	629.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-6570.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	1.0	0.0	1.5	0.0	0.0	1.5
Merged-chr2-163048129-3	chr2	163047621	163048621	+	629.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6514.0	NM_008652	17865.0	Mm.4594	NM_008652	ENSMUSG00000017861	Mybl2	B-Myb|Bmyb	myeloblastosis oncogene-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138165639-1	chr1	138165139	138166139	+	629.333313	f0_balb.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	9487.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31931691-2	chr16	31931191	31932191	+	629.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2160.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-26905801-3	chr18	26905302	26906302	+	629.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1151645.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-19952448-3	chr13	19951959	19952959	+	629.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-128202.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	2.0	1.0	0.0	0.0	0.0	0.0
Merged-chr16-80406804-2	chr16	80406304	80407304	+	629.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	407428.0	NM_030146	78654.0		NM_030146		1700066C05Rik	-	RIKEN cDNA 1700066C05 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6307754-2	chr19	6307254	6308254	+	629.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033342, intron 1 of 36)	intron (NM_001033342, intron 1 of 36)	1297.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24613184-3	chr13	24612669	24613669	+	629.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286100, intron 1 of 22)	intron (NM_001286100, intron 1 of 22)	-1437.0	NM_001286101	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173753593-2	chr1	173753081	173754081	+	629.25	f0_balb.idr|f0_c57.idr	intron (NM_008329, intron 5 of 8)	intron (NM_008329, intron 5 of 8)	-11772.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	9.0	24.5	10.0	12.0	17.5	7.5
Merged-chr1-171386126-2	chr1	171385607	171386607	+	629.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122680, intron 7 of 7)	intron (NM_001122680, intron 7 of 7)	-2853.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	2.0	0.5	0.0	0.0	0.0	1.0
Merged-chr2-62686526-2	chr2	62686026	62687026	+	629.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_145523, intron 5 of 7)	B3|SINE|B2	22199.0	NM_145523	227960.0	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-55911052-2	chr7	55910554	55911554	+	629.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 22 of 30)	L1MEf|LINE|L1	51439.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	180.5	351.0	238.0	200.5	319.0	222.5
Merged-chr7-144892240-2	chr7	144891703	144892703	+	629.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4329.0	NM_008003	14170.0	Mm.3904	NM_008003	ENSMUSG00000031073	Fgf15	FGF19	fibroblast growth factor 15	protein-coding	0.0	2.0	0.0	0.0	0.0	1.0
Merged-chr16-84879312-3	chr16	84878805	84879805	+	629.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43680.0	NM_001302213	11957.0	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	1.0	5.0	0.5	0.0	0.0	1.0
Merged-chr16-20718601-3	chr16	20718104	20719104	+	629.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001356423, exon 1 of 5)	5' UTR (NM_001356423, exon 1 of 5)	427.0	NM_001356423	245841.0	Mm.288730	NM_145632	ENSMUSG00000021018	Polr2h	-	polymerase (RNA) II (DNA directed) polypeptide H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-8353247-2	chr5	8352747	8353747	+	629.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	14913.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90137769-3	chr7	90137232	90138232	+	629.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	B3A|SINE|B2	7519.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	45.5	128.5	66.5	56.0	101.5	60.0
Merged-chr5-137888113-2	chr5	137887613	137888613	+	629.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16355.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25432936-2	chr7	25432436	25433436	+	629.125	f1_balb.idr|f1_c57bl6.idr	intron (NR_015569, intron 4 of 6)	intron (NR_015569, intron 4 of 6)	-20050.0	NM_153576	232983.0	Mm.10545	NM_153576	ENSMUSG00000060188	Cxcl17	VCC-1|Vcc1	chemokine (C-X-C motif) ligand 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31511934-2	chr15	31511434	31512434	+	629.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_172606, intron 1 of 25)	intron (NM_172606, intron 1 of 25)	19103.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-119220468-4	chr6	119219936	119220936	+	629.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033379, exon 9 of 9)	3' UTR (NM_001033379, exon 9 of 9)	-16090.0	NM_001033382	319734.0	Mm.440773	NM_001033382	ENSMUSG00000041460	Cacna2d4	5730412N02Rik|BE686333	calcium channel, voltage-dependent, alpha 2/delta subunit 4	protein-coding	3.5	0.0	0.0	6.5	2.5	4.0
Merged-chr8-106410892-2	chr8	106410392	106411392	+	629.041626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4447.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-104231795-2	chr11	104231295	104232295	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038609, intron 1 of 11)	CpG	359.0	NM_001285454	17762.0	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124481123-2	chr6	124480623	124481623	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11990.0	NM_181344	232371.0	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-34082558-2	chr3	34082058	34083058	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1204.0	NM_001286973	67713.0	Mm.274266	NM_026332	ENSMUSG00000027679	Dnajc19	1810055D05Rik|AA959924|Tim14	DnaJ heat shock protein family (Hsp40) member C19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156458780-1	chr1	156458280	156459280	+	629.0	f0_balb.idr	intron (NM_009230, intron 2 of 15)	intron (NM_009230, intron 2 of 15)	15548.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	7.5	23.0	16.5	17.5	37.0	37.0
Merged-chr2-49747004-2	chr2	49746504	49747504	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008449, intron 21 of 25)	intron (NM_008449, intron 21 of 25)	-40682.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-63942959-2	chr7	63942465	63943465	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4050.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	3.0	0.0	1.5	2.5	7.5	4.0
Merged-chr2-125795315-2	chr2	125794820	125795820	+	629.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-12450.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	2.0	11.0	15.5	1.0	6.5	3.5
Merged-chr14-103061629-2	chr14	103061129	103062129	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8587.0	NM_001033242	211286.0	Mm.295289	NM_001033242	ENSMUSG00000022125	Cln5	A730075N08Rik	ceroid-lipofuscinosis, neuronal 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109880653-2	chr8	109880153	109881153	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122594, intron 2 of 18)	ORR1B2-int|LTR|ERVL-MaLR	12050.0	NM_001122594	244650.0	Mm.23494	NM_001122594	ENSMUSG00000031732	Phlpp2	AI481772|C130044A18Rik|Phlppl	PH domain and leucine rich repeat protein phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-25682467-2	chr18	25681967	25682967	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362322, intron 1 of 12)	intron (NM_001362322, intron 1 of 12)	-2719.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-135116693-1	chr6	135116193	135117193	+	629.0	f0_balb.idr	exon (NM_001205396, exon 2 of 4)	exon (NM_001205396, exon 2 of 4)	1590.0	NM_053118	93746.0	Mm.49902	NM_053118	ENSMUSG00000030205	Gprc5d	-	G protein-coupled receptor, family C, group 5, member D	protein-coding	1.0	0.0	3.0	0.0	0.0	0.0
Merged-chr10-5287941-2	chr10	5287441	5288441	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347711, intron 55 of 145)	intron (NM_001347711, intron 55 of 145)	-93234.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141001929-2	chr4	141001429	141002429	+	629.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029097, exon 16 of 29)	exon (NM_029097, exon 16 of 29)	-8495.0	NM_001161799	17150.0	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122650069-2	chr5	122649569	122650569	+	629.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284402)	promoter-TSS (NM_001284402)	-355.0	NM_001284402	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	0.5	0.0	0.5	0.5	0.0	0.0
Merged-chr3-127632734-2	chr3	127632234	127633234	+	629.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009718)	promoter-TSS (NM_009718)	-402.0	NM_009718	11924.0	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding	0.0	0.0	1.0	1.0	0.0	0.0
Merged-chr4-77599995-1	chr4	77599495	77600495	+	629.0	f1_c57bl6.idr	intron (NM_011211, intron 3 of 39)	L1_Mus4|LINE|L1	611900.0	NM_011211	19266.0	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.0	0.0	1.0	1.0	0.0	2.5
Merged-chr9-114913332-2	chr9	114912832	114913832	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175380, intron 4 of 7)	intron (NM_175380, intron 4 of 7)	20655.0	NM_175380	333433.0	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	4.5	7.0	4.0	0.0	4.5	2.0
Merged-chr12-80337427-2	chr12	80336927	80337927	+	629.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177267, exon 9 of 9)	3' UTR (NM_177267, exon 9 of 9)	54250.0	NR_037207	100526530.0		NR_037207	ENSMUSG00000105972	Mir1843a	Mir1843|mir-1843a|mmu-mir-1843|mmu-mir-1843a	microRNA 1843a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55032304-2	chr11	55031804	55032804	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 1 of 24)	intron (NR_138556, intron 1 of 24)	1167.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14277742-1	chr2	14277242	14278242	+	629.0	f0_balb.idr	intron (NM_008625, intron 10 of 29)	RLTR51A_Mm|LTR|ERVK?	16739.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101173095-2	chr11	101172595	101173595	+	629.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007721)	TTS (NM_007721)	-1723.0	NM_001346769	217198.0	Mm.273254	NM_146030	ENSMUSG00000035172	Plekhh3	BC020025	pleckstrin homology domain containing, family H (with MyTH4 domain) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-102690822-2	chr13	102690322	102691322	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2725.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0.0	2.0	4.0	4.5	21.5	2.5
Merged-chr8-123092120-2	chr8	123091620	123092620	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153176, intron 13 of 16)	intron (NM_153176, intron 13 of 16)	-10230.0	NM_016738	270106.0	Mm.319719	NM_016738	ENSMUSG00000000740	Rpl13	A52|L13	ribosomal protein L13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120434359-1	chr14	120433859	120434859	+	629.0	f0_balb.idr	Intergenic	Intergenic	-44102.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25497984-2	chr14	25497484	25498484	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	-36455.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77908250-2	chr9	77907750	77908750	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-9115.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-32587106-2	chr14	32586606	32587606	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12302.0	NM_001347590	107751.0	Mm.119274	NM_001001796	ENSMUSG00000041730	Prrxl1	Drg11|Drgx	paired related homeobox protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85498853-2	chr12	85498357	85499357	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24967.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-19670044-2	chr5	19669544	19670544	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 1 of 22)	intron (NM_001170746, intron 1 of 22)	-237474.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20146169-2	chr11	20145670	20146670	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(GGAA)n|Simple_repeat|Simple_repeat	-33219.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	0.5	12.5	2.0	1.0	4.0	3.0
Merged-chr15-7073500-4	chr15	7073023	7074023	+	629.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56049.0	NM_001113386	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191874604-1	chr1	191874104	191875104	+	629.0	f1_balb.idr	Intergenic	Intergenic	-32177.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	4.5	9.0	8.0	15.0	2.0	14.5
Merged-chr13-12875099-2	chr13	12874599	12875599	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75020.0	NM_011118	18812.0	Mm.457984	NM_011118	ENSMUSG00000056457	Prl2c3	Ghd1|MRP-2|MRP-3|Mrpplf3|PLF-2|PLF-3|Plf2|Prl2c4|mrp/plf3	prolactin family 2, subfamily c, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3313275-2	chr12	3312775	3313775	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-3306.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-6029894-1	chr13	6029394	6030394	+	629.0	f0_balb.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	168405.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-115089429-1	chr13	115088929	115089929	+	629.0	f0_balb.idr	exon (NM_134058, exon 1 of 2)	exon (NM_134058, exon 1 of 2)	729.0	NM_134058	105083.0	Mm.486295	NM_134058	ENSMUSG00000042275	Pelo	AA409897|AI852218	pelota mRNA surveillance and ribosome rescue factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75361617-1	chr18	75361117	75362117	+	629.0	f1_balb.idr	intron (NR_155535, intron 6 of 6)	B2_Mm2|SINE|B2	5471.0	NR_155535	102636262.0	Mm.421168	NR_155535		Gm20544	-	predicted gene 20544	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-12413362-2	chr6	12412862	12413862	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164805, intron 7 of 26)	intron (NM_001164805, intron 7 of 26)	-303782.0	NR_003631	625347.0	Mm.389084	NM_001039041	ENSMUSG00000057223	Gm6578	EG625347	mitochondrial ribosomal protein L32 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36708094-2	chr15	36707594	36708594	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER34|LTR|ERV1	82838.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54970144-3	chr18	54969619	54970619	+	629.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	20061.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160665239-2	chr2	160664739	160665739	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009408, intron 2 of 20)	(T)n|Simple_repeat|Simple_repeat	19342.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80179583-1	chr10	80179083	80180083	+	629.0	f0_balb.idr	5' UTR (NM_007909, exon 1 of 4)	5' UTR (NM_007909, exon 1 of 4)	101.0	NM_007909	13637.0	Mm.1478	NM_007909	ENSMUSG00000003070	Efna2	CEK7L|Elf1|Epl6|Eplg6|Lerk6	ephrin A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135110848-2	chr1	135110348	135111348	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153383, intron 28 of 36)	intron (NR_153383, intron 28 of 36)	-5572.0	NM_001033409	329252.0	Mm.279594	NM_001033409	ENSMUSG00000042793	Lgr6	A530037C04Rik|D830026M09	leucine-rich repeat-containing G protein-coupled receptor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44538051-3	chr9	44537470	44538470	+	629.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11549.0	NM_007551	12145.0	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	8.5	0.0	4.5	8.5	0.0	6.0
Merged-chr6-128662393-1	chr6	128661893	128662893	+	629.0	f0_balb.idr	promoter-TSS (NM_053165)	promoter-TSS (NM_053165)	8.0	NM_053165	94071.0	Mm.197689	NM_053165	ENSMUSG00000030364	Clec2h	Clrf|clr-f	C-type lectin domain family 2, member h	protein-coding	0.0	0.0	2.5	0.0	0.0	1.0
Merged-chr2-73538981-2	chr2	73538481	73539481	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9494.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138013924-1	chr4	138013424	138014424	+	629.0	f0_balb.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	16099.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	14.5	54.0	22.5	30.5	46.0	25.5
Merged-chr1-53777463-1	chr1	53776963	53777963	+	629.0	f0_balb.idr	intron (NM_133810, intron 1 of 7)	intron (NM_133810, intron 1 of 7)	7752.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	47.5	131.0	97.5	56.0	107.5	86.5
Merged-chr8-70942205-1	chr8	70941705	70942705	+	629.0	f0_balb.idr	Intergenic	RMER19C|LTR|ERVK	10890.0	NM_001357655	665828.0	Mm.482151	NM_001357655	ENSMUSG00000074252	Gm10654	EG665828	predicted gene 10654	protein-coding	1.5	0.0	4.5	4.5	0.0	4.5
Merged-chr14-25868974-2	chr14	25868474	25869474	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013469, intron 2 of 14)	intron (NM_013469, intron 2 of 14)	26819.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.5	0.0	0.0	1.0	0.5	0.0
Merged-chr13-37559796-2	chr13	37559296	37560296	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	214451.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	4.0	6.5	1.0	6.5	10.0	2.5
Merged-chr11-118482450-2	chr11	118481950	118482950	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153103, intron 5 of 13)	intron (NR_153103, intron 5 of 13)	5618.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180618787-1	chr2	180618287	180619287	+	629.0	f1_balb.idr	intron (NM_009936, intron 30 of 31)	intron (NM_009936, intron 30 of 31)	20565.0	NM_009936	12841.0	Mm.141312	NM_009936	ENSMUSG00000027570	Col9a3	AV006866	collagen, type IX, alpha 3	protein-coding	1.5	0.0	0.0	0.0	3.0	0.0
Merged-chr17-33539325-2	chr17	33538819	33539819	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_137629, intron 10 of 23)	intron (NR_137629, intron 10 of 23)	15234.0	NM_001329147	224697.0	Mm.29304	NM_172619	ENSMUSG00000024299	Adamts10	9430006O18|AW045948|Adam-ts10|Adamts-10|Znmp	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10	protein-coding	4.0	0.5	0.5	0.5	0.0	5.5
Merged-chr9-118716481-1	chr9	118715981	118716981	+	629.0	f0_balb.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	4789.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	5.0	2.5	0.0	3.0	3.5	0.5
Merged-chr18-63282956-2	chr18	63282456	63283456	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039485, intron 2 of 53)	MTC|LTR|ERVL-MaLR	104227.0	NM_001039485	667742.0	Mm.158720	NM_172629	ENSMUSG00000041482	Piezo2	5930434P17|9030411M15Rik|9430028L06Rik|Fam38b|Fam38b2	piezo-type mechanosensitive ion channel component 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-37028350-1	chr17	37027850	37028850	+	629.0	f0_balb.idr	Intergenic	Intergenic	-4952.0	NM_010814	17441.0	Mm.210857	NM_010814	ENSMUSG00000076439	Mog	B230317G11Rik	myelin oligodendrocyte glycoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61336868-2	chr10	61336368	61337368	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013753, intron 18 of 19)	intron (NM_013753, intron 18 of 19)	39032.0	NM_011073	18646.0	Mm.240313	NM_011073	ENSMUSG00000037202	Prf1	Pfn|Pfp|Prf-1	perforin 1 (pore forming protein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80052033-2	chr15	80051533	80052533	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26546.0	NR_028282	100302601.0		NR_028282	ENSMUSG00000077734	Snord83b	MBII-10	small nucleolar RNA, C/D box 83B	snoRNA	2.0	0.0	1.5	2.0	0.0	1.5
Merged-chr1-181145164-2	chr1	181144664	181145664	+	629.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026171)	promoter-TSS (NM_026171)	-960.0	NM_026171	67459.0	Mm.263464	NM_026171	ENSMUSG00000026516	Nvl	1200009I24Rik	nuclear VCP-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-21508680-1	chr12	21508180	21509180	+	629.0	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-91244.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	0.5	3.0	5.5	2.0	2.5	3.5
Merged-chr10-83182253-2	chr10	83181753	83182753	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021439, intron 2 of 2)	B4A|SINE|B4	155564.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47626995-1	chr14	47626495	47627495	+	629.0	f0_balb.idr	Intergenic	L1MCa|LINE|L1	-22316.0	NM_001347527	16709.0	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	3.5	2.0	1.5	6.0	4.5	0.0
Merged-chr6-6863719-3	chr6	6863215	6864215	+	629.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_002839)	TTS (NR_002839)	381.0	NM_010057	13396.0	Mm.439763	NM_010057	ENSMUSG00000029754	Dlx6	-	distal-less homeobox 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-74987318-2	chr7	74986818	74987818	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-42893.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71741943-1	chr8	71741443	71742443	+	629.0	f0_balb.idr	Intergenic	Intergenic	-16262.0	NM_028715	74015.0	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	0.5	3.5	3.0	4.0	0.0	3.5
Merged-chr4-11158288-2	chr4	11157788	11158788	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199105, intron 1 of 4)	intron (NM_001199105, intron 1 of 4)	1847.0	NM_021897	60599.0	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap|p53DINP1	transformation related protein 53 inducible nuclear protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19112813-1	chr7	19112313	19113313	+	629.0	f1_balb.idr	Intergenic	Intergenic	-7046.0	NM_175530	243867.0	Mm.230830	NM_175530	ENSMUSG00000050428	Fbxo46	20D7-FC4|4932704E22Rik|Fbxo34l	F-box protein 46	protein-coding	0.0	0.0	4.0	0.0	0.0	0.0
Merged-chr13-37482237-3	chr13	37481744	37482744	+	629.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136899.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	33.0	47.5	43.5	40.5	53.5	41.5
Merged-chr11-68051978-2	chr11	68051478	68052478	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018768, intron 6 of 7)	intron (NM_018768, intron 6 of 7)	85520.0	NM_018768	55943.0	Mm.3973	NM_018768	ENSMUSG00000020903	Stx8	0610007H08Rik|1110002H11Rik|4930571E13Rik|CARB	syntaxin 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34843757-2	chr11	34843257	34844257	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10116.0	NM_027411	70385.0	Mm.194368	NM_027411	ENSMUSG00000069910	Spdl1	1700018I02Rik|2600001J17Rik|2810049B11Rik|AA409762|Ccdc99	spindle apparatus coiled-coil protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99514730-2	chr12	99514230	99515230	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49111.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20159468-1	chr13	20158968	20159968	+	629.0	f1_balb.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	68961.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	4.5	0.0	7.5	17.0	1.0	6.5
Merged-chr14-121346248-2	chr14	121345748	121346748	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145465, intron 1 of 10)	intron (NM_145465, intron 1 of 10)	32982.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-85433676-2	chr6	85433144	85434144	+	629.0	f0_balb.idr|f0_c57.idr	intron (NM_144918, intron 1 of 12)	intron (NM_144918, intron 1 of 12)	1668.0	NM_144918	232187.0	Mm.219946	NM_144918	ENSMUSG00000033706	Smyd5	AW536703|NN8-4AG|Rai15|Rrg1	SET and MYND domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134714867-2	chr5	134714367	134715367	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007925, intron 23 of 36)	intron (NM_007925, intron 23 of 36)	-26277.0	NM_010717	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-136898466-1	chr3	136897966	136898966	+	629.0	f1_balb.idr	intron (NM_008913, intron 8 of 13)	intron (NM_008913, intron 8 of 13)	228400.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.0	1.0	2.5	5.5	5.5	5.5
Merged-chr10-78576768-2	chr10	78576268	78577268	+	629.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_173751, exon 3 of 16)	exon (NM_173751, exon 3 of 16)	1777.0	NM_001359303	216136.0	Mm.2644	NM_173751	ENSMUSG00000032763	Ilvbl	5830463I21|AI415009	ilvB (bacterial acetolactate synthase)-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-13209422-2	chr14	13208922	13209922	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_121588, intron 2 of 3)	intron (NR_121588, intron 2 of 3)	75216.0	NR_121589	328354.0	Mm.252404	NM_177813	ENSMUSG00000051729	Gm5087	C630025C03|EG328354	predicted gene 5087	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130897828-2	chr4	130897328	130898328	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15506.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6301766-2	chr19	6301266	6302266	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4691.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36528107-2	chr18	36527607	36528607	+	629.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271546)	promoter-TSS (NM_001271546)	-45.0	NM_172830	240215.0	Mm.135463	NM_172830	ENSMUSG00000024485	Slc4a9	AE4|D630003B07|D630024F24Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 9	protein-coding	2.5	0.0	3.0	0.0	0.0	0.0
Merged-chr1-171164522-1	chr1	171164022	171165022	+	629.0	f1_balb.idr	Intergenic	B1_Mus2|SINE|Alu	9004.0	NM_001315500	17528.0	Mm.9986	NM_008623	ENSMUSG00000056569	Mpz	Mpp|P-zero|P0	myelin protein zero	protein-coding	3.5	23.0	9.5	6.5	8.0	10.5
Merged-chr19-18548738-5	chr19	18548209	18549209	+	629.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83104.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	2.5	0.5	1.5	1.5	0.5	1.5
Merged-chr3-118122499-2	chr3	118121999	118122999	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-253563.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-149858972-2	chr1	149858472	149859472	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 13 of 17)	B3|SINE|B2	63467.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-82759105-1	chr3	82758605	82759605	+	629.0	f0_balb.idr	Intergenic	Intergenic	117378.0	NM_001277170	633285.0	Mm.265114	NM_001146328	ENSMUSG00000033882	Rbm46	EG633285|Gm761	RNA binding motif protein 46	protein-coding	0.0	0.5	0.0	0.0	4.0	0.0
Merged-chr18-39488513-2	chr18	39488019	39489019	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1274.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	10.5	35.0	28.5	14.0	36.5	24.0
Merged-chr4-155758983-2	chr4	155758483	155759483	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_179203, intron 1 of 15)	intron (NM_179203, intron 1 of 15)	2115.0	NM_179203	108888.0	Mm.241152	NM_179203	ENSMUSG00000029036	Atad3a	2400004H09Rik|Atad3|Tob3|mKIAA1273	ATPase family, AAA domain containing 3A	protein-coding	0.0	0.0	0.5	0.5	2.5	0.5
Merged-chr6-70793477-2	chr6	70792977	70793977	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1302.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136810818-2	chr6	136810318	136811318	+	629.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177688)	TTS (NM_177688)	2570.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	18.0	69.5	41.0	10.0	64.5	37.5
Merged-chr5-118606831-3	chr5	118606328	118607328	+	629.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	46109.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr8-122552920-1	chr8	122552420	122553420	+	629.0	f1_c57bl6.idr	Intergenic	Intergenic	-1591.0	NM_001357349	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	2.0	1.5	5.5	6.0	5.0	1.0
Merged-chr12-80939985-2	chr12	80939463	80940463	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	5436.0	NR_045057	100504661.0	Mm.442322	NR_045057	ENSMUSG00000112880	Gm20337	-	predicted gene, 20337	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-26908395-1	chr18	26907895	26908895	+	629.0	f0_balb.idr	Intergenic	Intergenic	-1154238.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-48886212-4	chr2	48885727	48886727	+	629.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007396, intron 4 of 10)	intron (NM_007396, intron 4 of 10)	63040.0	NM_001177313	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-13391103-3	chr15	13390591	13391591	+	628.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-217416.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-77168980-3	chr1	77168465	77169465	+	628.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	327803.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	14.0	8.5	3.5	3.5	4.5	14.0
Merged-chr11-21179247-4	chr11	21178748	21179748	+	628.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER34A|LTR|ERV1	-59784.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0.0	2.0	0.0	0.0	0.0	3.0
Merged-chr2-150667190-5	chr2	150666701	150667701	+	628.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040331)	promoter-TSS (NR_040331)	-293.0	NR_040331	109344.0	Mm.440012	NR_040331	ENSMUSG00000087406	E130215H24Rik	-	RIKEN cDNA E130215H24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41075526-2	chr13	41075026	41076026	+	628.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145802, intron 1 of 11)	intron (NM_001145802, intron 1 of 11)	4180.0	NM_001145803	17152.0	Mm.8149	NM_008547	ENSMUSG00000021363	Mak	A930010O05Rik	male germ cell-associated kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76465702-2	chr15	76465202	76466202	+	628.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_013481, intron 3 of 15)	intron (NM_013481, intron 3 of 15)	8264.0	NM_198885	20289.0	Mm.322821	NM_198885	ENSMUSG00000034161	Scx	BB114693|Bhlha41|Scl	scleraxis	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94597242-3	chr10	94596697	94597697	+	628.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-10998.0	NR_106070	102466817.0		NR_106070	ENSMUSG00000098544	Mir7211	Gm27536|mmu-mir-7211	microRNA 7211	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99680970-3	chr7	99680533	99681533	+	628.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175316, intron 7 of 13)	intron (NM_175316, intron 7 of 13)	14776.0	NM_001252531	101488.0	Mm.11249	NM_175316	ENSMUSG00000030737	Slco2b1	AI060904|AI852653|OATP-B|Slc21a9	solute carrier organic anion transporter family, member 2b1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31276656-2	chr16	31276156	31277156	+	628.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1379.0	NM_025800	66849.0	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|I-2|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	2.0	0.0	0.5	3.0	0.0	0.0
Merged-chr17-34858357-3	chr17	34857861	34858861	+	628.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105938)	promoter-TSS (NR_105938)	-729.0	NR_105938	102465587.0		NR_105938	ENSMUSG00000098445	Mir6972	Gm27810|mmu-mir-6972	microRNA 6972	ncRNA	0.5	0.5	7.0	4.5	8.5	0.0
Merged-chr2-60037203-4	chr2	60036789	60037789	+	628.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 2 of 35)	intron (NM_001001182, intron 2 of 35)	88451.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36547921-2	chr1	36547421	36548421	+	628.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132321)	promoter-TSS (NR_132321)	-669.0	NR_132321	109346.0	Mm.247537	NM_026241	ENSMUSG00000079610	Ankrd39	9130416N05Rik|C030004B10Rik	ankyrin repeat domain 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55443994-2	chr13	55443494	55444494	+	628.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1078.0	NM_001286063	26385.0	Mm.10193	NM_011938	ENSMUSG00000074886	Grk6	Gprk6	G protein-coupled receptor kinase 6	protein-coding	8.0	9.5	21.5	8.0	9.0	20.5
Merged-chr19-29493428-2	chr19	29492928	29493928	+	628.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28559.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35929774-2	chr18	35929224	35930224	+	628.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35106.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr8-61664415-3	chr8	61663939	61664939	+	628.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	-73270.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-90651517-2	chr11	90651017	90652017	+	628.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_028011, intron 12 of 15)	intron (NM_028011, intron 12 of 15)	11482.0	NM_001357547	71943.0	Mm.167868	NM_028011	ENSMUSG00000020541	Tom1l1	2310045L10Rik|C80573|Srcasm	target of myb1-like 1 (chicken)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122447498-3	chr10	122446999	122447999	+	628.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016847)	promoter-TSS (NM_016847)	-1000.0	NM_016847	54140.0	Mm.4351	NM_016847	ENSMUSG00000020123	Avpr1a	AVPR|Avpr1|V1a|V1aR	arginine vasopressin receptor 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20181540-3	chr13	20181037	20182037	+	628.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	91030.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	25.5	49.5	32.0	22.0	50.5	21.0
Merged-chr16-25967500-3	chr16	25966993	25967993	+	628.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173379, intron 13 of 14)	intron (NM_173379, intron 13 of 14)	138291.0	NM_173379	210530.0	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140827617-3	chr5	140827111	140828111	+	628.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 1 of 3)	intron (NM_010302, intron 1 of 3)	2820.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4144602-2	chr19	4144102	4145102	+	628.666687	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_206973, exon 2 of 2)	3' UTR (NM_206973, exon 2 of 2)	-4061.0	NM_011778	23789.0	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99622315-2	chr12	99621815	99622815	+	628.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	5659.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116058290-2	chr9	116057790	116058790	+	628.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028638, intron 14 of 14)	intron (NM_028638, intron 14 of 14)	117073.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	17.0	18.0	4.0	13.5	9.0	6.0
Merged-chr13-44673653-3	chr13	44673229	44674229	+	628.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57045.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-60607682-2	chr3	60607182	60608182	+	628.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 3 of 7)	intron (NM_001253711, intron 3 of 7)	106503.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0.0	0.5	2.0	1.0	3.5	2.0
Merged-chr8-48009223-1	chr8	48008723	48009723	+	628.5	f0_balb.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	-18672.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48195255-2	chr17	48194755	48195755	+	628.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27998.0	NM_178796	328830.0	Mm.470939	NM_178796	ENSMUSG00000043939	A530064D06Rik	Trem4|pdctrem	RIKEN cDNA A530064D06 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118795660-2	chr9	118795160	118796160	+	628.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 3 of 13)	intron (NM_001113514, intron 3 of 13)	83968.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167277886-2	chr2	167277386	167278386	+	628.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-37349.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-74500068-2	chr7	74499568	74500568	+	628.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038643, intron 2 of 10)	intron (NM_001038643, intron 2 of 10)	54712.0	NM_023908	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.0	0.0	5.5	2.5	0.0	0.5
Merged-chr4-123667187-2	chr4	123666687	123667687	+	628.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_136925, intron 1 of 3)	intron (NR_136925, intron 1 of 3)	1306.0	NR_136925	102633214.0	Mm.399387	NR_136925		Gm12925	-	predicted gene 12925	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35436828-2	chr17	35436328	35437328	+	628.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2327.0	NM_010394	15018.0	Mm.431282	NM_010394	ENSMUSG00000060550	H2-Q7	H-2Q7|Ped|Q9|Qa-2|Qa-7|Qa7	histocompatibility 2, Q region locus 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152557412-2	chr1	152556912	152557912	+	628.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001346119, exon 5 of 18)	exon (NM_001346119, exon 5 of 18)	67805.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54983324-2	chr12	54982822	54983822	+	628.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013815, intron 2 of 26)	intron (NM_013815, intron 2 of 26)	3014.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	5.0	16.0	9.0	2.0	7.5	5.0
Merged-chr1-57989293-2	chr1	57988793	57989793	+	628.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177867, intron 1 of 5)	intron (NM_001177867, intron 1 of 5)	3953.0	NM_001177867	68549.0	Mm.32800	NM_199007	ENSMUSG00000026039	Sgo2a	1110007N04Rik|4932411A20Rik|5730576N04Rik|AU018846|AV008062|D1Ertd8e|Sgol2|Sgol2a|Tripin	shugoshin 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-78613940-2	chr2	78613440	78614440	+	628.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB7_4-LTR_MM|LTR|ERVK	-255107.0	NM_009454	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-47750239-2	chr8	47749739	47750739	+	628.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-36308.0	NM_172407	70925.0	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50255055-2	chr16	50254555	50255555	+	628.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 7 of 16)	intron (NM_027444, intron 7 of 16)	177334.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100052375-2	chr15	100051875	100052875	+	628.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 1 of 37)	B1_Mur1|SINE|Alu	13711.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-70451924-2	chr4	70451424	70452424	+	628.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172694, intron 3 of 5)	intron (NM_172694, intron 3 of 5)	-41489.0	NM_145990	214444.0	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118004701-2	chr2	118004198	118005198	+	628.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	ORR1E|LTR|ERVL-MaLR	106504.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	0.0	0.5	2.5	0.0	1.0	2.5
Merged-chr5-36747201-2	chr5	36746701	36747701	+	628.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133724)	TTS (NM_133724)	1478.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-18407038-2	chr10	18406536	18407536	+	628.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173390)	promoter-TSS (NM_173390)	-639.0	NM_173390	215819.0	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62606251-2	chr10	62605751	62606751	+	628.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3953.0	NM_019553	56200.0	Mm.413275	NM_019553	ENSMUSG00000020075	Ddx21	AI255159|AL022742|D10Ertd645e|D10Wsu42e	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78191190-2	chr11	78190690	78191690	+	628.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159482, intron 7 of 10)	intron (NM_001159482, intron 7 of 10)	-2202.0	NM_001045516	216974.0	Mm.50974	NM_001045516	ENSMUSG00000044122	Proca1	4933404M19Rik	protein interacting with cyclin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93655371-2	chr1	93654871	93655871	+	628.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19644.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-143153995-2	chr6	143153495	143154495	+	628.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153819)	promoter-TSS (NR_153819)	-64.0	NR_153819	102633311.0	Mm.333484	NR_153819		Gm31108	Gm31169	predicted gene, 31108	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-28541451-2	chr2	28540951	28541951	+	628.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145836, intron 2 of 17)	MTC|LTR|ERVL-MaLR	7987.0	NM_001145836	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35260176-2	chr17	35259676	35260676	+	628.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVK26-int|LTR|ERVK	-2918.0	NM_010380	14964.0	Mm.439675	NM_010380	ENSMUSG00000073411	H2-D1	H-2D|H2-D	histocompatibility 2, D region locus 1	protein-coding	0.0	3.5	5.0	3.5	1.5	4.5
Merged-chr12-80261412-2	chr12	80260912	80261912	+	628.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1031.0	NM_001346669	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45368578-2	chr7	45368078	45369078	+	628.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_015480)	TTS (NR_015480)	1345.0	NR_027802	50994.0	Mm.389897	NM_016664	ENSMUSG00000091510	Mtag2	MAG	metastasis associated gene 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-60994476-2	chr8	60993976	60994976	+	628.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293639, intron 1 of 31)	intron (NM_001293639, intron 1 of 31)	1283.0	NM_175089	18004.0	Mm.486881	NM_175089	ENSMUSG00000031644	Nek1	D8Ertd790e|kat	NIMA (never in mitosis gene a)-related expressed kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30187089-2	chr16	30186589	30187589	+	628.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80443.0	NM_027904	71756.0	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73708174-2	chr15	73707674	73708674	+	628.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173365)	promoter-TSS (NM_173365)	-669.0	NM_173365	239530.0	Mm.122997	NM_173365	ENSMUSG00000045281	Gpr20	A430106B11Rik	G protein-coupled receptor 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86078785-2	chr17	86078285	86079285	+	628.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030133, intron 14 of 20)	intron (NM_030133, intron 14 of 20)	66390.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr15-96802173-2	chr15	96801673	96802673	+	628.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-102445.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-71877349-2	chr7	71876848	71877848	+	628.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32347.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	5.5	1.5	6.5	1.5	3.5	5.0
Merged-chr17-17896786-2	chr17	17896286	17897286	+	628.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	8962.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	1.0	0.0	0.0	0.0	2.0	0.5
Merged-chr9-120965315-2	chr9	120964815	120965815	+	628.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177589, intron 36 of 36)	intron (NM_177589, intron 36 of 36)	10229.0	NR_106058	102465661.0		NR_106058	ENSMUSG00000106193	Mir7090	mmu-mir-7090	microRNA 7090	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-33966525-2	chr1	33966025	33967025	+	628.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276764, intron 2 of 102)	intron (NM_001276764, intron 2 of 102)	-45300.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-52105112-1	chr14	52104612	52105612	+	628.5	f1_balb.idr	Intergenic	B2_Mm2|SINE|B2	-1091.0	NM_001360180	15381.0	Mm.427321	NM_016884	ENSMUSG00000060373	Hnrnpc	AL022939|D14Wsu171e|Hnrpc|Hnrpc1|Hnrpc2|hnRNPC1|hnRNPC2|hnrnp-C	heterogeneous nuclear ribonucleoprotein C	protein-coding	70.0	174.0	94.5	53.0	188.5	132.0
Merged-chr2-27566839-2	chr2	27566339	27567339	+	628.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51692.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5038219-3	chr6	5037718	5038718	+	628.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	MTA_Mm|LTR|ERVL-MaLR	134898.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9176860-2	chr13	9176360	9177360	+	628.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82979.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82821020-2	chr18	82820520	82821520	+	628.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34877.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78585869-2	chr10	78585369	78586369	+	628.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_027875, exon 8 of 8)	exon (NM_027875, exon 8 of 8)	6095.0	NM_027875	71709.0	Mm.86439	NM_027875	ENSMUSG00000032714	Syde1	1200008N06Rik|BB043000|mSYD1A	synapse defective 1, Rho GTPase, homolog 1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29766753-2	chr7	29766253	29767253	+	628.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1799.0	NM_023750	74352.0	Mm.251083	NM_023750	ENSMUSG00000046185	Zfp84	2210410P13Rik|4633401C23Rik|AI415447|BB081605|C86188|KRAB18|Zfp69	zinc finger protein 84	protein-coding	0.5	6.5	2.0	2.5	7.0	0.0
Merged-chr17-34840170-2	chr17	34839670	34840670	+	628.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163770)	TTS (NM_001163770)	1701.0	NR_105937	102466777.0		NR_105937	ENSMUSG00000098458	Mir6971	Gm27307|mmu-mir-6971	microRNA 6971	ncRNA	7.0	0.0	6.0	0.0	0.0	2.0
Merged-chr9-107589630-2	chr9	107589129	107590129	+	628.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025903, intron 1 of 11)	B1_Mur4|SINE|Alu	1911.0	NM_025903	15983.0	Mm.215335	NM_025903	ENSMUSG00000010048	Ifrd2	1810034A24Rik|AA470234|AI838527|SKMc15	interferon-related developmental regulator 2	protein-coding	0.0	0.0	0.0	0.0	4.0	3.0
Merged-chr10-95213910-2	chr10	95213410	95214410	+	628.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	-68085.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6957884-2	chr17	6957372	6958372	+	628.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_147155, intron 2 of 3)	intron (NM_147155, intron 2 of 3)	3284.0	NM_147155	380608.0	Mm.371734	NM_147155	ENSMUSG00000052031	Tagap1	2610315E15Rik|AA415005|FKSG15	T cell activation GTPase activating protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14677131-2	chr2	14676631	14677631	+	628.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_023116, intron 2 of 13)	intron (NM_023116, intron 2 of 13)	-43511.0	NR_028497	625342.0	Mm.484784	NR_028497		Gm13315	-	lactate dehydrogenase A pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126789381-2	chr7	126788881	126789881	+	628.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_019674, intron 2 of 8)	intron (NM_019674, intron 2 of 8)	2983.0	NM_001360464	56420.0	Mm.41998	NM_019674	ENSMUSG00000030697	Ppp4c	1110002D08Rik|AU016079|PP-X|PP4C|Ppx|pp4	protein phosphatase 4, catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11798236-3	chr2	11797736	11798736	+	628.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	20483.0	NM_177268	320816.0	Mm.260201	NM_177268	ENSMUSG00000047909	Ankrd16	2810455F06Rik|AI646698|D430029B21Rik	ankyrin repeat domain 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35186851-3	chr17	35186339	35187339	+	628.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_010734, intron 2 of 3)	intron (NM_010734, intron 2 of 3)	1601.0	NM_010734	16988.0	Mm.19379	NM_010734	ENSMUSG00000073412	Lst1	B144	leukocyte specific transcript 1	protein-coding	55.5	119.5	78.0	45.5	108.0	52.5
Merged-chr14-120390525-2	chr14	120390025	120391025	+	628.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360379, intron 5 of 6)	intron (NM_001360379, intron 5 of 6)	84073.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115269818-3	chr8	115269320	115270320	+	628.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019573, intron 8 of 8)	intron (NM_019573, intron 8 of 8)	437074.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153945361-3	chr1	153944857	153945857	+	628.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45428.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-72367394-3	chr2	72366894	72367894	+	628.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 4 of 19)	intron (NM_023057, intron 4 of 19)	81693.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8876860-1	chr10	8876360	8877360	+	628.333313	f1_balb.idr	intron (NM_175155, intron 1 of 19)	B3|SINE|B2	9210.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	26.5	89.5	85.0	55.5	134.5	75.5
Merged-chr6-73211085-2	chr6	73210585	73211585	+	628.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164669, intron 2 of 76)	ORR1F|LTR|ERVL-MaLR	10546.0	NM_001164669	330355.0	Mm.333166	NM_001164669	ENSMUSG00000052861	Dnah6	9830168K20|A730004I20Rik|Dnahc6|mKIAA1697|mdhc6	dynein, axonemal, heavy chain 6	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr13-116969832-2	chr13	116969374	116970374	+	628.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	ORR1E|LTR|ERVL-MaLR	55642.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	1.0	15.0	5.5	5.5	4.0	2.0
Merged-chr5-135544159-2	chr5	135543659	135544659	+	628.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	963.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-65825910-2	chr15	65825410	65826410	+	628.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_133766, intron 5 of 22)	intron (NM_133766, intron 5 of 22)	38890.0	NM_001356582	76740.0	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-44256735-3	chr17	44256237	44257237	+	628.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172621, intron 4 of 5)	intron (NM_172621, intron 4 of 5)	68165.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	0.0	0.0	0.0	1.5	0.0	0.5
Merged-chr19-56599595-3	chr19	56599113	56600113	+	628.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025811)	TTS (NM_025811)	51352.0	NM_025811	66866.0	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-91421768-3	chr13	91421295	91422295	+	628.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33710.0	NR_045161	320297.0	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44404097-3	chr19	44403580	44404580	+	628.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009127, intron 2 of 5)	MIRc|SINE|MIR	3629.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68467319-2	chr10	68466819	68467819	+	628.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028491, intron 5 of 7)	intron (NM_028491, intron 5 of 7)	74556.0	NM_028491	73287.0	Mm.141830	NM_028491	ENSMUSG00000019945	Cabcoco1	1700040L02Rik	ciliary associated calcium binding coiled-coil 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17675911-2	chr12	17675411	17676411	+	628.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14898.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0.0	2.5	0.0	0.5	1.0	1.5
Merged-chr12-113220046-2	chr12	113219533	113220533	+	628.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34130.0	NM_153776	69195.0	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	1.0	4.0	1.0	0.0	0.0	1.0
Merged-chr14-70629607-3	chr14	70629100	70630100	+	628.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252665)	promoter-TSS (NM_001252665)	-553.0	NM_001360030	13829.0	Mm.210863	NM_013514	ENSMUSG00000022099	Dmtn	AI325486|Epb4.9|Epb49|dematin	dematin actin binding protein	protein-coding	0.0	0.0	2.0	0.0	4.0	4.0
Merged-chr7-88231795-2	chr7	88231295	88232295	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-46290.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39368932-2	chr10	39368432	39369432	+	628.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122892)	promoter-TSS (NM_001122892)	-867.0	NM_001122892	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-44236803-2	chr4	44236303	44237303	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15536.0	NR_039565	100628618.0		NR_039565	ENSMUSG00000092677	Mir5106	mir-5106|mmu-mir-5106|mu-mir-5106	microRNA 5106	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-31890188-1	chr11	31889688	31890688	+	628.0	f1_balb.idr	intron (NM_001290678, intron 2 of 7)	intron (NM_001290678, intron 2 of 7)	19248.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	5.0	6.5	18.0	5.0	10.5	17.5
Merged-chr11-51581467-2	chr11	51580967	51581967	+	628.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153393, exon 29 of 29)	3' UTR (NM_153393, exon 29 of 29)	-3290.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109860771-1	chr11	109860271	109861271	+	628.0	f1_c57bl6.idr	Intergenic	Intergenic	14893.0	NR_045909	73257.0	Mm.250442	NR_045909	ENSMUSG00000087393	1700023C21Rik	-	RIKEN cDNA 1700023C21 gene	ncRNA	18.5	13.0	14.0	3.5	8.5	0.0
Merged-chr4-54794065-1	chr4	54793565	54794565	+	628.0	f0_balb.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-153880.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	4.0	12.0	7.0	9.5	9.0	7.5
Merged-chr15-29901733-2	chr15	29901233	29902233	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-188329.0	NR_039542	100628607.0		NR_039542	ENSMUSG00000092639	Mir3964	mmu-mir-3964|mu-mir-3964	microRNA 3964	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96487412-2	chr3	96486912	96487912	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35106.0	NM_001256181	329716.0	Mm.275223	NM_183223	ENSMUSG00000046317	BC107364	D730018G16	cDNA sequence BC107364	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95711733-2	chr16	95711233	95712233	+	628.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011809, exon 4 of 10)	exon (NM_011809, exon 4 of 10)	9326.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-99351671-2	chr13	99351171	99352171	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173757, intron 2 of 10)	L1MC4|LINE|L1	6885.0	NM_173757	218506.0	Mm.30208	NM_173757	ENSMUSG00000041632	Mrps27	2610028H14Rik	mitochondrial ribosomal protein S27	protein-coding	0.0	5.5	8.0	0.0	0.0	2.0
Merged-chr3-122939413-2	chr3	122938913	122939913	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133857, intron 14 of 15)	intron (NM_133857, intron 14 of 15)	15016.0	NM_024461	67704.0	Mm.24219	NM_024461	ENSMUSG00000054091	1810037I17Rik	5730414I01Rik|Aln	RIKEN cDNA 1810037I17 gene	protein-coding	2.5	0.0	0.0	0.0	0.5	0.0
Merged-chr11-69800338-2	chr11	69799840	69800840	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010198, intron 1 of 5)	intron (NM_010198, intron 1 of 5)	1376.0	NM_001291104	14166.0	Mm.269011	NM_010198	ENSMUSG00000042826	Fgf11	Fgf-11|Fhf-3|Fhf3	fibroblast growth factor 11	protein-coding	0.0	0.0	0.5	0.0	0.0	1.5
Merged-chr2-27343443-2	chr2	27342943	27343943	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	84165.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-129730591-2	chr3	129730091	129731091	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010113, intron 5 of 23)	L1MC5a|LINE|L1	-5505.0	NM_001329594	13645.0	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27683043-2	chr2	27682543	27683543	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	5842.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75677822-2	chr10	75677322	75678322	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172549, intron 29 of 36)	intron (NM_172549, intron 29 of 36)	-33814.0	NM_027890	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72572574-2	chr8	72572074	72573074	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151663, intron 1 of 2)	intron (NR_151663, intron 1 of 2)	751.0	NM_001357279	74166.0	Mm.212927	NM_144534	ENSMUSG00000031791	Tmem38a	1110001E17Rik|AI413399|SPR-27|TRIC-A|mg33a	transmembrane protein 38A	protein-coding	4.0	3.5	13.5	2.5	10.0	5.0
Merged-chr9-72662773-2	chr9	72662273	72663273	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010890, intron 1 of 28)	CpG	442.0	NM_010890	17999.0	Mm.279923	NM_010890	ENSMUSG00000032216	Nedd4	AA959633|AL023035|AU019897|E430025J12Rik|EG639396|Gm7265|KIAA0093|Nedd4-1|Nedd4a	neural precursor cell expressed, developmentally down-regulated 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10696018-2	chr19	10695518	10696518	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	L1MEc|LINE|L1	-4750.0	NM_001361964	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173013105-2	chr2	173012605	173013605	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175112, intron 11 of 11)	intron (NM_175112, intron 11 of 11)	-8797.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78328219-1	chr15	78327719	78328719	+	628.0	f0_balb.idr	intron (NM_001358854, intron 2 of 14)	intron (NM_001358854, intron 2 of 14)	2229.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	0.0	3.0	7.0	9.5	6.0	1.5
Merged-chr5-138117868-2	chr5	138117368	138118368	+	628.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011757, exon 2 of 5)	5' UTR (NM_011757, exon 2 of 5)	963.0	NM_001044705	22697.0	Mm.2760	NM_011757	ENSMUSG00000037017	Zscan21	AI326272|CTfin51|RU49|Zfp-38|Zfp38|Zipro1	zinc finger and SCAN domain containing 21	protein-coding	1.5	4.5	0.5	3.5	13.0	9.5
Merged-chr7-35032971-2	chr7	35032471	35033471	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 12 of 14)	intron (NM_008820, intron 12 of 14)	23595.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71087160-1	chr17	71086660	71087660	+	628.0	f1_c57bl6.idr	intron (NM_001083934, intron 18 of 36)	B3|SINE|B2	67603.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	4.5	39.0	16.0	6.5	5.5	6.5
Merged-chr11-34076519-2	chr11	34076019	34077019	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 10 of 20)	intron (NM_010696, intron 10 of 20)	22035.0	NR_155520	76874.0	Mm.437529	NR_155520		4930469K13Rik	-	RIKEN cDNA 4930469K13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr14-58315304-2	chr14	58314804	58315804	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	242618.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54699625-1	chr12	54699125	54700125	+	628.0	f1_balb.idr	Intergenic	Intergenic	-3731.0	NM_025456	66266.0	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding	0.5	0.0	1.5	18.0	3.0	0.0
Merged-chr5-23843113-2	chr5	23842613	23843613	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025394, intron 1 of 2)	intron (NM_025394, intron 1 of 2)	1032.0	NM_025394	66169.0	Mm.291868	NM_025394	ENSMUSG00000028998	Tomm7	1110020J08Rik|AW047273|Tom7	translocase of outer mitochondrial membrane 7	protein-coding	12.0	20.5	5.0	6.0	19.0	7.5
Merged-chr11-102286785-2	chr11	102286285	102287285	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028076, intron 2 of 3)	intron (NM_028076, intron 2 of 3)	1846.0	NM_001302505	72053.0	Mm.101274	NM_028076	ENSMUSG00000034757	Tmub2	2010008E23Rik	transmembrane and ubiquitin-like domain containing 2	protein-coding	0.0	0.5	1.0	0.0	8.5	0.5
Merged-chr16-91376325-1	chr16	91375825	91376825	+	628.0	f0_balb.idr	intron (NM_001347258, intron 1 of 7)	intron (NM_001347258, intron 1 of 7)	3542.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-92676229-1	chr7	92675729	92676729	+	628.0	f1_balb.idr	Intergenic	Intergenic	-6317.0	NM_029078	74737.0	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	31.0	40.0	8.0	43.5	45.5	31.5
Merged-chr8-70582735-1	chr8	70582235	70583235	+	628.0	f1_balb.idr	intron (NM_007924, intron 5 of 11)	intron (NM_007924, intron 5 of 11)	-11746.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	0.0	0.5	4.0	0.5	0.0	1.5
Merged-chr17-31002180-2	chr17	31001680	31002680	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177465, intron 19 of 21)	intron (NM_177465, intron 19 of 21)	47497.0	NM_177465	52020.0	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	2.0	8.0	6.5	6.0	2.5	0.5
Merged-chr5-117577167-1	chr5	117576667	117577667	+	628.0	f0_c57.idr	intron (NM_001312914, intron 4 of 19)	intron (NM_001312914, intron 4 of 19)	163165.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	4.5	1.0	3.5	2.0	0.0	0.5
Merged-chr1-36332250-2	chr1	36331750	36332750	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	16508.0	NR_105863	102465541.0		NR_105863	ENSMUSG00000098680	Mir6898	Gm27816|mmu-mir-6898	microRNA 6898	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-5841582-1	chr10	5841082	5842082	+	628.0	f0_balb.idr	intron (NM_001161822, intron 4 of 5)	intron (NM_001161822, intron 4 of 5)	-17639.0	NM_175374	108853.0	Mm.55082	NM_175374	ENSMUSG00000019774	Mtrf1l	9130004K12Rik	mitochondrial translational release factor 1-like	protein-coding	10.5	9.5	1.5	0.0	6.0	0.5
Merged-chr8-60888440-2	chr8	60887940	60888940	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1953.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	0.0	0.0	0.0	1.0	1.5	1.0
Merged-chr5-104943098-1	chr5	104942598	104943598	+	628.0	f0_balb.idr	intron (NM_030239, intron 13 of 15)	intron (NM_030239, intron 13 of 15)	39619.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	23.0	31.5	46.0	32.0	30.5	18.0
Merged-chr4-11152032-1	chr4	11151532	11152532	+	628.0	f0_balb.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-4409.0	NM_001199105	60599.0	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap|p53DINP1	transformation related protein 53 inducible nuclear protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98822469-2	chr12	98821969	98822969	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081191, intron 27 of 43)	B2_Mm1t|SINE|B2	51447.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-37243603-1	chr12	37243103	37244103	+	628.0	f1_balb.idr	intron (NM_178767, intron 1 of 12)	intron (NM_178767, intron 1 of 12)	1964.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	6.0	19.5	9.0	6.0	5.0	12.0
Merged-chr15-78903082-1	chr15	78902582	78903582	+	628.0	f1_balb.idr	exon (NM_001316684, exon 6 of 18)	exon (NM_001316684, exon 6 of 18)	3314.0	NM_009164	20401.0	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	2.0	14.5	5.5	7.5	13.5	6.0
Merged-chr4-152293123-2	chr4	152292623	152293623	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1461.0	NM_008237	15207.0	Mm.3516	NM_008237	ENSMUSG00000028946	Hes3	Hes-3|bHLHb43	hes family bHLH transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30652180-2	chr14	30651680	30652680	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2195.0	NM_177815	328370.0	Mm.259657	NM_177815	ENSMUSG00000052395	Rft1	D930025H04	RFT1 homolog	protein-coding	3.5	10.5	3.5	4.0	9.5	0.0
Merged-chr9-107626320-1	chr9	107625820	107626820	+	628.0	f1_balb.idr	intron (NM_008138, intron 1 of 8)	intron (NM_008138, intron 1 of 8)	9022.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	16.5	42.5	36.0	5.5	15.0	15.0
Merged-chr1-183398075-1	chr1	183397575	183398575	+	628.0	f0_balb.idr	intron (NM_001277957, intron 4 of 10)	intron (NM_001277957, intron 4 of 10)	9090.0	NM_001277958	21339.0	Mm.383556	NM_021466	ENSMUSG00000072258	Taf1a	TAFI48|mTAFI48	TATA-box binding protein associated factor, RNA polymerase I, A	protein-coding	7.0	6.0	10.0	7.0	6.0	7.0
Merged-chr1-130373911-1	chr1	130373411	130374411	+	628.0	f0_balb.idr	Intergenic	Intergenic	-48913.0	NR_151525	102640368.0		NR_151525	ENSMUSG00000087691	Gm15674	-	predicted gene 15674	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24752965-3	chr17	24752484	24753484	+	628.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357340)	promoter-TSS (NM_001357340)	-4.0	NM_001357342	328779.0	Mm.328848	NM_001012402	ENSMUSG00000039628	Hs3st6	3-OST-6	heparan sulfate (glucosamine) 3-O-sulfotransferase 6	protein-coding	0.0	3.5	0.0	2.5	0.0	0.0
Merged-chr6-122572536-1	chr6	122572036	122573036	+	628.0	f1_c57bl6.idr	Intergenic	Intergenic	18727.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	73.5	194.0	119.0	61.5	117.5	104.5
Merged-chr5-124006294-1	chr5	124005794	124006794	+	628.0	f1_balb.idr	exon (NM_177876, exon 4 of 4)	exon (NM_177876, exon 4 of 4)	9442.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18813770-2	chr16	18813270	18814270	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011672, intron 1 of 11)	intron (NM_011672, intron 1 of 11)	1476.0	NM_011672	22230.0	Mm.237594	NM_011672	ENSMUSG00000005262	Ufd1	Ufd1l	ubiquitin recognition factor in ER-associated degradation 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6231822-2	chr19	6231322	6232322	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198168, intron 6 of 13)	intron (NM_198168, intron 6 of 13)	4018.0	NM_198168	225849.0	Mm.118076	NM_198168	ENSMUSG00000024777	Ppp2r5b	B'beta|BC026670	protein phosphatase 2, regulatory subunit B', beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46841438-2	chr11	46840938	46841938	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178759, intron 7 of 8)	Lx7|LINE|L1	30639.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	6.5	6.5	7.0	0.0	3.5	1.0
Merged-chr14-8099022-2	chr14	8098522	8099522	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	(TCTCTG)n|Simple_repeat|Simple_repeat	811.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-36732170-2	chr13	36731670	36732670	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153529, intron 1 of 2)	intron (NM_153529, intron 1 of 2)	2307.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	0.0	0.0	0.0	2.0	5.0	1.0
Merged-chr15-98845797-2	chr15	98845297	98846297	+	628.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033276, exon 40 of 55)	exon (NM_001033276, exon 40 of 55)	-14289.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-65740747-2	chr11	65740207	65741207	+	628.0	f0_balb.idr|f1_balb.idr	intron (NM_001316367, intron 3 of 11)	URR1B|DNA|hAT-Charlie	-5875.0	NR_030417	791070.0		NR_030417	ENSMUSG00000076460	Mir744	Mirn744|mir-744|mmu-mir-744	microRNA 744	ncRNA	0.0	3.5	3.0	8.0	4.0	1.5
Merged-chr3-88240485-2	chr3	88239985	88240985	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14199.0	NM_021375	58176.0	Mm.103777	NM_021375	ENSMUSG00000104445	Rhbg	-	Rhesus blood group-associated B glycoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-81583194-1	chr9	81582694	81583694	+	628.0	f1_balb.idr	Intergenic	MER57-int|LTR|ERV1	-48736.0	NR_040394	319405.0	Mm.246494	NR_040393	ENSMUSG00000097466	D430036J16Rik	-	RIKEN cDNA D430036J16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133092344-2	chr4	133091844	133092844	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38289.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	34.0	17.5	17.0	23.0	17.0	16.0
Merged-chr12-47596702-2	chr12	47596180	47597180	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-777905.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0.0	2.5	0.0	0.0	0.0	0.0
Merged-chr5-144249961-2	chr5	144249461	144250461	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163709, intron 1 of 2)	MLTR14|LTR|ERV1	-5264.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	1.5	1.0	0.0	1.5	1.0	0.0
Merged-chr12-32824717-1	chr12	32824217	32825217	+	628.0	f1_balb.idr	non-coding (NR_045032, exon 1 of 1)	non-coding (NR_045032, exon 1 of 1)	601.0	NR_045032	100504486.0	Mm.440246	NR_045032		Gdap10	Gdap-ps	ganglioside-induced differentiation-associated-protein 10	ncRNA	40.0	47.5	25.5	41.0	80.0	46.5
Merged-chr17-81679812-3	chr17	81679313	81680313	+	628.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	ORR1D2|LTR|ERVL-MaLR	58574.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97985942-2	chr3	97985442	97986442	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27596.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74382791-2	chr1	74382291	74383291	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013612, intron 9 of 14)	B1_Mur4|SINE|Alu	7588.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4860399-2	chr18	4859899	4860899	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13G|LTR|ERVK	47913.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88494903-2	chr3	88494403	88495403	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002011, intron 1 of 11)	intron (NM_001002011, intron 1 of 11)	-1591.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	1.5	4.0	0.0	1.5	0.0	0.0
Merged-chr1-116448932-2	chr1	116448432	116449432	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077425, intron 18 of 23)	Lx2|LINE|L1	763795.0	NM_001077425	636808.0	Mm.101576	NM_001077425	ENSMUSG00000070695	Cntnap5a	Caspr5-1|EG636808	contactin associated protein-like 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138188518-1	chr5	138188018	138189018	+	628.0	f1_balb.idr	intron (NM_178612, intron 1 of 5)	intron (NM_178612, intron 1 of 5)	983.0	NM_178612	66455.0	Mm.24592	NM_178612	ENSMUSG00000036968	Cnpy4	2610019P18Rik	canopy FGF signaling regulator 4	protein-coding	0.0	9.0	1.0	0.0	17.5	6.5
Merged-chr5-65699361-2	chr5	65698818	65699818	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-1462.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	78.5	171.5	157.5	81.5	219.0	163.5
Merged-chr8-75060651-2	chr8	75060151	75061151	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136259, intron 12 of 15)	intron (NM_001136259, intron 12 of 15)	26965.0	NM_011622	21968.0	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171278092-2	chr1	171277592	171278592	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008911, intron 8 of 12)	intron (NM_008911, intron 8 of 12)	3094.0	NM_008911	19044.0	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	0.0	0.0	1.5	0.5	1.5	0.0
Merged-chr6-57744329-2	chr6	57743829	57744829	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	41874.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-91159550-2	chr17	91159050	91160050	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-66748.0	NM_020252	18189.0	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69633234-1	chr3	69632734	69633734	+	628.0	f1_c57bl6.idr	Intergenic	Intergenic	-34274.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	24.0	24.0	45.5	25.5	31.0	35.5
Merged-chr6-55289345-2	chr6	55288845	55289845	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142781, intron 13 of 17)	intron (NM_001142781, intron 13 of 17)	-46954.0	NM_007472	11826.0	Mm.18625	NM_007472	ENSMUSG00000004655	Aqp1	CHIP28	aquaporin 1	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr11-54878620-2	chr11	54878120	54879120	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B1|LTR|ERVL	12237.0	NM_008248	15254.0	Mm.425	NM_008248	ENSMUSG00000020267	Hint1	AA673479|Hint|Ipk1|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-67378258-1	chr13	67377758	67378758	+	628.0	f1_c57bl6.idr	Intergenic	RLTR13B3|LTR|ERVK	-2495.0	NM_001001186	408065.0	Mm.461583	NM_001001186	ENSMUSG00000078995	Zfp456	BC065418|Rslcan-13	zinc finger protein 456	protein-coding	7.5	9.0	4.5	0.0	2.5	0.0
Merged-chr10-93777517-1	chr10	93777017	93778017	+	628.0	f1_balb.idr	Intergenic	Intergenic	-54038.0	NM_001206851	327799.0	Mm.491598	NM_183199	ENSMUSG00000020020	Usp44	E430004F17Rik	ubiquitin specific peptidase 44	protein-coding	11.5	4.0	1.0	0.0	0.0	0.0
Merged-chr17-24894675-2	chr17	24894199	24895199	+	628.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023260)	promoter-TSS (NM_023260)	388.0	NM_001163102	193838.0	Mm.440199	NM_001163102	ENSMUSG00000073436	Eme2	2810013J18Rik	essential meiotic structure-specific endonuclease subunit 2	protein-coding	1.0	2.0	14.0	0.5	0.0	3.0
Merged-chr7-28051395-2	chr7	28050895	28051895	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1303.0	NM_011874	23996.0	Mm.29582	NM_011874	ENSMUSG00000030603	Psmc4	CIP21|MIP224	proteasome (prosome, macropain) 26S subunit, ATPase, 4	protein-coding	1.5	0.0	0.0	3.5	1.5	2.0
Merged-chr8-13596713-2	chr8	13596213	13597213	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 5 of 23)	intron (NM_009025, intron 5 of 23)	-34252.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181193734-2	chr2	181193234	181194234	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	6487.0	NM_001356427	66496.0	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143113594-2	chr5	143113094	143114094	+	628.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207110)	promoter-TSS (NM_207110)	-574.0	NM_001359851	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47482198-2	chr17	47481698	47482698	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20093.0	NM_001356290	63856.0	Mm.275901	NM_022015	ENSMUSG00000023980	Taf8	AW260255|Tbn	TATA-box binding protein associated factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12204614-4	chr13	12204094	12205094	+	628.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081128, intron 24 of 32)	intron (NM_001081128, intron 24 of 32)	-18106.0	NR_045170	328186.0	Mm.188154	NM_183202		Gm10336	B330003H21	predicted gene 10336	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-29893972-3	chr5	29893461	29894461	+	627.966675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119153.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-56694088-3	chr14	56693591	56694591	+	627.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360072, intron 11 of 13)	LSU-rRNA_Hsa|rRNA|rRNA	6909.0	NR_046209	100503823.0	Mm.474486	NR_046209		Gm16973	-	predicted gene, 16973	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81061079-2	chr7	81060560	81061560	+	627.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_054085, intron 1 of 13)	B3A|SINE|B2	3460.0	NM_054085	116904.0	Mm.475768	NM_054085	ENSMUSG00000038763	Alpk3	AW319487|D330016D04|MAK|Midori|mKIAA1330	alpha-kinase 3	protein-coding	5.0	3.5	2.5	8.0	13.5	6.5
Merged-chr15-98565636-2	chr15	98565136	98566136	+	627.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009833, intron 1 of 8)	B3|SINE|B2	-1688.0	NR_028442	100048895.0	Mm.471074	NR_028442		9330020H09Rik	-	RIKEN cDNA 9330020H09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122566914-2	chr6	122566414	122567414	+	627.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13105.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111670938-2	chr10	111670438	111671438	+	627.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76665.0	NR_045344	71321.0	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-55673429-3	chr3	55672914	55673914	+	627.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030595, intron 48 of 57)	intron (NM_030595, intron 48 of 57)	-109096.0	NM_010750	17116.0	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121803422-2	chr11	121802922	121803922	+	627.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26796.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77070211-2	chr10	77069711	77070711	+	627.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109991, intron 21 of 40)	intron (NM_001109991, intron 21 of 40)	36999.0	NM_031196	20509.0	Mm.265060	NM_031196	ENSMUSG00000001436	Slc19a1	AI323572|RFC|RFC-1|RFC1	solute carrier family 19 (folate transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-151993266-2	chr4	151992826	151993826	+	627.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172705, intron 2 of 3)	intron (NM_172705, intron 2 of 3)	2853.0	NM_172705	230936.0	Mm.25582	NM_172705	ENSMUSG00000047777	Phf13	BC029632|Phf5|SPOC1	PHD finger protein 13	protein-coding	0.0	0.0	0.0	1.0	2.5	5.0
Merged-chr1-166139003-2	chr1	166138503	166139503	+	627.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360925, intron 1 of 5)	intron (NM_001360925, intron 1 of 5)	8782.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104376223-2	chr8	104375723	104376723	+	627.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_153582, intron 1 of 3)	ID_B1|SINE|B4	19584.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-86890259-2	chr5	86889774	86890774	+	627.75	f0_balb.idr|f1_balb.idr	3' UTR (NM_153598, exon 6 of 6)	3' UTR (NM_153598, exon 6 of 6)	16663.0	NM_153598	100727.0	Mm.281844	NM_153598	ENSMUSG00000029260	Ugt2b34	AI788959	UDP glucuronosyltransferase 2 family, polypeptide B34	protein-coding	2.0	6.5	0.0	0.0	2.0	0.0
Merged-chr5-137834963-2	chr5	137834463	137835463	+	627.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_153510, intron 2 of 6)	intron (NM_153510, intron 2 of 6)	1315.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5835973-2	chr19	5835473	5836473	+	627.75	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131212, exon 1 of 1)	non-coding (NR_131212, exon 1 of 1)	9505.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-12216597-2	chr2	12216097	12217097	+	627.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001309, intron 13 of 29)	intron (NM_001001309, intron 13 of 29)	-84649.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32999822-2	chr19	32999322	33000322	+	627.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157290.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-14636941-5	chr19	14636462	14637462	+	627.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38779.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-104465952-3	chr14	104465432	104466432	+	627.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011143, exon 2 of 3)	exon (NM_011143, exon 2 of 3)	2067.0	NM_011143	18996.0	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40706775-2	chr19	40706275	40707275	+	627.708374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	47005.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	7.0	12.5	17.5	9.0	8.5	15.0
Merged-chr18-43493889-3	chr18	43493387	43494387	+	627.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55601.0	NM_001291455	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74946530-2	chr11	74946030	74947030	+	627.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 8 of 18)	intron (NM_001002764, intron 8 of 18)	20658.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123254820-2	chr4	123254320	123255320	+	627.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21264.0	NM_013905	56198.0	Mm.103615	NM_013905	ENSMUSG00000032744	Heyl	Hey3|Hrt3|bHLHb33|hesr3	hairy/enhancer-of-split related with YRPW motif-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161974613-3	chr1	161974057	161975057	+	627.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204904, intron 1 of 6)	intron (NM_001204904, intron 1 of 6)	5079.0	NM_001204904	75368.0	Mm.108728	NM_001204904	ENSMUSG00000086277	4930558K02Rik	-	RIKEN cDNA 4930558K02 gene	protein-coding	16.0	21.0	12.0	21.0	10.5	22.0
Merged-chr3-89887850-3	chr3	89887487	89888487	+	627.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 3 of 9)	intron (NM_010559, intron 3 of 9)	25209.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	2.5	10.0	4.5	6.0	1.0	6.5
Merged-chr6-125364072-1	chr6	125363572	125364572	+	627.666687	f1_c57bl6.idr	intron (NM_198604, intron 15 of 16)	intron (NM_198604, intron 15 of 16)	14349.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	2.5	10.0	9.0	0.0	3.5	4.0
Merged-chr2-162999934-3	chr2	162999447	163000447	+	627.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013731, intron 10 of 13)	B3|SINE|B2	8532.0	NM_001291152	27219.0	Mm.26462	NM_013731	ENSMUSG00000017868	Sgk2	AI098171|AW146006|Sgkl	serum/glucocorticoid regulated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98864182-1	chr11	98863682	98864682	+	627.666687	f0_balb.idr	intron (NM_197940, intron 1 of 7)	intron (NM_197940, intron 1 of 7)	584.0	NM_197940	68524.0	Mm.28661	NM_197940	ENSMUSG00000038013	Wipf2	1110014J05Rik|5730509C05Rik|AA407487|Gm1176|Wich|Wire	WAS/WASL interacting protein family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38936063-2	chr6	38935563	38936563	+	627.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	intron (NM_011539, intron 1 of 12)	17077.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73559856-2	chr2	73559356	73560356	+	627.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	20482.0	NM_007389	11435.0	Mm.4583	NM_007389	ENSMUSG00000027107	Chrna1	AI385656|AI608266|Achr-1|Acra	cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67048444-2	chr10	67047944	67048944	+	627.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	43369.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57177442-2	chr16	57176942	57177942	+	627.549988	f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 15 of 17)	intron (NM_026254, intron 15 of 17)	-10110.0	NM_023175	52633.0	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113103969-2	chr6	113103469	113104469	+	627.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173005)	promoter-TSS (NM_173005)	-966.0	NM_173005	72895.0	Mm.367159	NM_028385	ENSMUSG00000034269	Setd5	2900045N06Rik|C330007C20|C85544|mKIAA1757	SET domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-108446277-2	chr10	108445797	108446797	+	627.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114108.0	NM_054056	114774.0	Mm.391419	NM_054056	ENSMUSG00000035873	Pawr	2310001G03Rik|PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding	0.0	0.0	1.0	0.0	1.0	0.0
Merged-chr15-101317200-2	chr15	101316700	101317700	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	23988.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9761761-2	chr13	9761261	9762261	+	627.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347474, intron 1 of 14)	intron (NM_001347474, intron 1 of 14)	2049.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-89491303-2	chr13	89490803	89491803	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49333.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	2.5	1.0	0.0	0.5	0.0	0.0
Merged-chr2-32161822-2	chr2	32161322	32162322	+	627.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172661, intron 1 of 29)	intron (NM_172661, intron 1 of 29)	10674.0	NM_001159634	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55616808-3	chr16	55616324	55617324	+	627.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	122093.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35039341-2	chr7	35038841	35039841	+	627.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 12 of 14)	intron (NM_008820, intron 12 of 14)	17225.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123148199-2	chr5	123147699	123148699	+	627.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001040398, exon 6 of 17)	exon (NM_001040398, exon 6 of 17)	6006.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr5-139908527-2	chr5	139908027	139909027	+	627.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175522, intron 1 of 1)	CpG	584.0	NM_175522	243312.0	Mm.237102	NM_175522	ENSMUSG00000048988	Elfn1	A930017N06Rik|AI197272|Ppp1r28	leucine rich repeat and fibronectin type III, extracellular 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-143258665-2	chr4	143258165	143259165	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40899.0	NM_010329	14726.0	Mm.2976	NM_010329	ENSMUSG00000028583	Pdpn	E11|Gp38|OTS-8|RANDAM-2|T1-alpha|T1a|T1alpha	podoplanin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22110774-2	chr9	22110274	22111274	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	3239.0	NR_106052	102466221.0		NR_106052	ENSMUSG00000098646	Mir7084	Gm27978|mmu-mir-7084	microRNA 7084	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-22822996-2	chr2	22822496	22823496	+	627.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 3 of 13)	intron (NM_019456, intron 3 of 13)	48669.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167370342-2	chr2	167369842	167370842	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-21164.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	3.5	2.0
Merged-chr16-5009471-2	chr16	5008971	5009971	+	627.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133185, intron 10 of 10)	intron (NM_133185, intron 10 of 10)	2155.0	NR_045596	432995.0	Mm.271618	NM_001253796	ENSMUSG00000096215	Smim22	EG432995|Gm5480	small integral membrane protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-97850725-2	chr16	97850225	97851225	+	627.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359077, intron 1 of 23)	intron (NM_001359077, intron 1 of 23)	502.0	NM_144789	114604.0	Mm.328741	NM_144789	ENSMUSG00000014039	Prdm15	C21orf83|E130018M06Rik|ORF62|Zfp298	PR domain containing 15	protein-coding	3.5	6.0	15.5	8.5	11.5	13.0
Merged-chr10-128032004-2	chr10	128031504	128032504	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3342.0	NM_013608	17938.0	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-110929430-2	chr14	110928930	110929930	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26|LTR|ERVK	-174281.0	NM_175499	239250.0	Mm.49728	NM_175499	ENSMUSG00000045871	Slitrk6	4832410J21Rik|Sltk6	SLIT and NTRK-like family, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65301554-2	chr18	65301054	65302054	+	627.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037294, intron 5 of 12)	intron (NM_001037294, intron 5 of 12)	52693.0	NR_029600	387231.0		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30390902-2	chr2	30390288	30391288	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1466.0	NM_020329	57170.0	Mm.285167	NM_020329	ENSMUSG00000026856	Dolpp1	0610011H20Rik|AB030189|LSFR2	dolichyl pyrophosphate phosphatase 1	protein-coding	2.0	2.5	0.0	0.5	1.5	2.5
Merged-chr18-74442562-2	chr18	74442062	74443062	+	627.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201600)	promoter-TSS (NM_201600)	-57.0	NM_201600	17919.0	Mm.260098	NM_008661	ENSMUSG00000025885	Myo5b	AI661750|mKIAA1119	myosin VB	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52943455-2	chr2	52942946	52943946	+	627.5	f0_balb.idr|f0_c57.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	85578.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80651539-2	chr18	80651061	80652061	+	627.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 7 of 9)	intron (NM_198429, intron 7 of 9)	56612.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-78781001-2	chr5	78780501	78781501	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	1315513.0	NR_131050	69370.0	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-33003806-2	chr19	33003306	33004306	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-153306.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26514484-2	chr17	26513984	26514984	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6012.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	12.5	9.5	9.0	3.5	9.5	0.0
Merged-chr10-53635666-2	chr10	53635166	53636166	+	627.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081428, intron 16 of 17)	intron (NM_001081428, intron 16 of 17)	-5227.0	NM_027830	71567.0	Mm.278221	NM_027830	ENSMUSG00000058298	Mcm9	9030408O17Rik|Gm235|Mcmdc1	minichromosome maintenance 9 homologous recombination repair factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47277723-2	chr17	47277223	47278223	+	627.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 4 of 19)	B4|SINE|B4	47493.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0.0	3.0	0.0	1.5	0.0	3.0
Merged-chr10-99207265-2	chr10	99206765	99207765	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-55966.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100115373-2	chr12	100114873	100115873	+	627.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008947, intron 3 of 9)	intron (NM_008947, intron 3 of 9)	3042.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67514694-2	chr15	67514194	67515194	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	287925.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	0.0	3.5	7.5	0.0	3.5	5.0
Merged-chr15-18241072-2	chr15	18240572	18241572	+	627.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045711, intron 7 of 11)	L1_Mus1|LINE|L1	128555.0	NR_045711	70886.0	Mm.399021	NR_045711	ENSMUSG00000098150	4921515E04Rik	-	RIKEN cDNA 4921515E04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67194402-2	chr18	67193906	67194906	+	627.5	f0_balb.idr|f1_balb.idr	intron (NM_177137, intron 5 of 11)	B3A|SINE|B2	-10953.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	1.0	5.5	7.0	2.5	15.5	11.5
Merged-chr8-114438951-2	chr8	114438451	114439451	+	627.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019573)	promoter-TSS (NM_019573)	-701.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-71990494-2	chr9	71989994	71990994	+	627.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011544, intron 5 of 20)	intron (NM_011544, intron 5 of 20)	-94398.0	NM_001253863	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0.0	6.5	2.0	8.5	0.5	3.5
Merged-chr18-74218882-2	chr18	74218381	74219381	+	627.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_028868, exon 7 of 15)	exon (NM_028868, exon 7 of 15)	2669.0	NM_028868	74322.0	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	0.0	0.0	0.0	2.0	1.5	2.0
Merged-chr11-102406102-2	chr11	102405561	102406561	+	627.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026542, intron 4 of 11)	B1_Mus1|SINE|Alu	-1074.0	NR_105895	102465561.0		NR_105895	ENSMUSG00000098774	Mir6930	Gm27436|mmu-mir-6930	microRNA 6930	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69940858-2	chr11	69940358	69941358	+	627.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016875, intron 7 of 8)	intron (NM_016875, intron 7 of 8)	4530.0	NM_001347634	53422.0	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-95038913-2	chr1	95038413	95039413	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	241471.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87455691-2	chr6	87455191	87456191	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26697.0	NM_009756	12154.0	Mm.483321	NM_009756	ENSMUSG00000030046	Bmp10	b2b2711Clo	bone morphogenetic protein 10	protein-coding	1.0	2.0	1.5	1.0	2.0	0.5
Merged-chr4-129580369-2	chr4	129579812	129580812	+	627.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-1732.0	NM_182783	230766.0	Mm.20377	NM_182783	ENSMUSG00000050493	Fam167b	SEC	family with sequence similarity 167, member B	protein-coding	18.5	31.0	20.0	19.0	14.0	7.5
Merged-chr8-70807399-2	chr8	70806872	70807872	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-1077.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	15.5	12.5	23.0	14.0	32.0	23.0
Merged-chr13-111802153-2	chr13	111801653	111802653	+	627.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	6840.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73408424-3	chr14	73407909	73408909	+	627.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-23120.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101328117-2	chr15	101327617	101328617	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34905.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34572621-2	chr13	34572121	34573121	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80060.0	NM_025831	66895.0	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-75275488-2	chr3	75274988	75275988	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-5410.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90461686-2	chr2	90461186	90462186	+	627.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 7 of 23)	B1_Mur1|SINE|Alu	17488.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28011172-2	chr17	28010672	28011672	+	627.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 12 of 24)	intron (NM_181413, intron 12 of 24)	69412.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37335310-4	chr10	37334783	37335783	+	627.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-196357.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83752242-2	chr8	83751742	83752742	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-10931.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	0.0	16.0	2.0	13.0	3.5	6.0
Merged-chr8-10922292-2	chr8	10921792	10922792	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6165.0	NR_030715	665306.0	Mm.358758	NR_030715	ENSMUSG00000038917	3930402G23Rik	-	RIKEN cDNA 3930402G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43916233-3	chr1	43915738	43916738	+	627.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-17756.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88624326-1	chr8	88623826	88624826	+	627.400024	f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	11802.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	1.5	2.0	9.0	1.5	0.5	2.0
Merged-chr2-112501394-3	chr2	112500836	112501836	+	627.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028844, intron 1 of 5)	intron (NM_028844, intron 1 of 5)	8372.0	NM_028844	74268.0	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106603332-3	chr8	106602844	106603844	+	627.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009864)	promoter-TSS (NM_009864)	-6.0	NM_009864	12550.0	Mm.35605	NM_009864	ENSMUSG00000000303	Cdh1	AA960649|ARC-1|E-cad|Ecad|L-CAM|UVO|Um	cadherin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66676765-3	chr15	66676271	66677271	+	627.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 5 of 47)	intron (NM_009375, intron 5 of 47)	6001.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	0.0	8.5	0.0	0.0	0.0	0.0
Merged-chr15-60629102-3	chr15	60628591	60629591	+	627.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-193874.0	NR_030696	320469.0	Mm.230853	NM_177166		9930014A18Rik	-	RIKEN cDNA 9930014A18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117538606-2	chr8	117538106	117539106	+	627.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 2 of 32)	ID_B1|SINE|B4	40331.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-79537708-2	chr14	79537208	79538208	+	627.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 2 of 8)	intron (NM_007920, intron 2 of 8)	22034.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122569300-2	chr2	122568800	122569800	+	627.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	41977.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	23.0	23.5	14.0	1.5	15.5	12.5
Merged-chr14-87486089-2	chr14	87485587	87486587	+	627.25	f0_c57.idr|f1_balb.idr	intron (NM_001253755, intron 8 of 11)	intron (NM_001253755, intron 8 of 11)	69504.0	NM_001253755	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	2.5	24.0	10.5	3.0	13.5	3.5
Merged-chr14-65170152-2	chr14	65169652	65170652	+	627.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72046.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115291073-3	chr11	115290545	115291545	+	627.233337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178035, intron 2 of 5)	intron (NM_178035, intron 2 of 5)	6501.0	NM_178035	328035.0	Mm.21995	NM_178035	ENSMUSG00000044788	Fads6	BC044804	fatty acid desaturase domain family, member 6	protein-coding	0.5	3.5	0.0	1.0	1.5	0.0
Merged-chr4-40285803-3	chr4	40285279	40286279	+	627.200012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6358.0	NM_001033305	230075.0	Mm.1103	NM_001033305	ENSMUSG00000071014	Ndufb6	CI-B17|Gm137	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119962301-2	chr4	119961785	119962785	+	627.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	147607.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	0.5	4.0	4.5	3.5	13.0	3.0
Merged-chr6-125587289-3	chr6	125586780	125587780	+	627.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 6 of 51)	intron (NM_011708, intron 6 of 51)	34332.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-60000415-2	chr1	59999915	60000915	+	627.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357296, intron 9 of 10)	L1M4b|LINE|L1	42707.0	NM_001357296	70375.0	Mm.17834	NM_027407	ENSMUSG00000026018	Ica1l	1700030B17Rik|Als2cr15|b2b3465Clo	islet cell autoantigen 1-like	protein-coding	5.0	3.5	0.0	1.0	0.0	8.0
Merged-chr18-6488785-2	chr18	6488285	6489285	+	627.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001276350)	TTS (NM_001276350)	1861.0	NR_035446	100316773.0		NR_035446	ENSMUSG00000084514	Mir1893	Mirn1893|mmu-mir-1893	microRNA 1893	ncRNA	2.5	8.0	3.0	2.5	8.0	3.0
Merged-chr10-127324161-2	chr10	127323661	127324661	+	627.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146011, intron 1 of 14)	MLTR14|LTR|ERV1	454.0	NM_001359656	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	16.5	58.0	25.5	20.5	84.5	27.5
Merged-chr1-61135749-2	chr1	61135249	61136249	+	627.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	157835.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-54059251-4	chr10	54058708	54059708	+	627.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 2 of 12)	intron (NM_008548, intron 2 of 12)	16588.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-51783823-3	chr17	51783330	51784330	+	627.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357637, intron 6 of 10)	intron (NM_001357637, intron 6 of 10)	28224.0	NM_001163630	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120819924-2	chr8	120819424	120820424	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81285.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21571204-2	chr11	21570704	21571704	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316675, intron 1 of 8)	intron (NM_001316675, intron 1 of 8)	730.0	NM_008618	17449.0	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29496785-2	chr6	29496285	29497285	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029985, intron 17 of 37)	intron (NM_001029985, intron 17 of 37)	11167.0	NM_001029985	333088.0	Mm.332961	NM_001029985	ENSMUSG00000059022	Kcp	AW060220|CRIM-2|Crim2|Gm793|KCP-1	kielin/chordin-like protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132530000-1	chr4	132529500	132530500	+	627.0	f1_c57bl6.idr	TTS (NM_007512)	TTS (NM_007512)	5414.0	NM_007512	11983.0	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	8.0	13.5	9.5	3.0	21.0	10.5
Merged-chr10-96618916-2	chr10	96618416	96619416	+	627.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007569, exon 2 of 2)	3' UTR (NM_007569, exon 2 of 2)	1915.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11344374-2	chr19	11343874	11344874	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8228.0	NM_027836	109225.0	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	0.0	2.5	0.0	0.0	0.0	0.0
Merged-chr2-133669996-2	chr2	133669496	133670496	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105288.0	NR_037273	100526500.0		NR_037273	ENSMUSG00000093338	Mir3090	mmu-mir-3090	microRNA 3090	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43455409-2	chr4	43454909	43455909	+	627.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007654)	promoter-TSS (NM_007654)	-783.0	NM_007654	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80163431-2	chr12	80162931	80163931	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30587.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-130936027-1	chr7	130935527	130936527	+	627.0	f0_c57.idr	promoter-TSS (NM_019564)	promoter-TSS (NM_019564)	-176.0	NM_019564	56213.0	Mm.30156	NM_019564	ENSMUSG00000006205	Htra1	AI429470|HTRA|L56|Prss11|RSPP11	HtrA serine peptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126016464-2	chr4	126015964	126016964	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8195.0	NR_045561	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74441491-2	chr1	74440991	74441991	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176972, intron 24 of 25)	intron (NM_176972, intron 24 of 25)	32107.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47765519-2	chr17	47765007	47766007	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-20237.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	29.0	75.5	35.0	20.0	17.0	13.5
Merged-chr5-149245134-2	chr5	149244634	149245634	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-19870.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108836830-2	chr12	108836330	108837330	+	627.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181328)	promoter-TSS (NM_181328)	-143.0	NR_029773	723946.0		NR_029773	ENSMUSG00000065429	Mir345	Mirn345|mir-345|mmu-mir-345	microRNA 345	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-82698494-2	chr10	82697994	82698994	+	627.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081218)	promoter-TSS (NM_001081218)	-513.0	NM_001081218	67933.0	Mm.127405	NM_026462	ENSMUSG00000020246	Hcfc2	1700129L13Rik|AU019838|fkls	host cell factor C2	protein-coding	2.0	1.5	1.0	2.0	3.5	0.0
Merged-chr11-64396508-1	chr11	64396008	64397008	+	627.0	f1_c57bl6.idr	Intergenic	Intergenic	-38824.0	NM_178870	15478.0	Mm.340214	NM_178870	ENSMUSG00000047759	Hs3st3a1	3Ost3a|Hs3st3a	heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1	protein-coding	3.0	4.0	10.5	0.0	2.0	8.0
Merged-chr7-100372696-1	chr7	100372196	100373196	+	627.0	f0_balb.idr	promoter-TSS (NM_028292)	promoter-TSS (NM_028292)	463.0	NM_001017985	277939.0	Mm.276374	NM_001017985	ENSMUSG00000047248	C2cd3	AU020772	C2 calcium-dependent domain containing 3	protein-coding	36.5	46.5	51.0	33.5	44.5	42.5
Merged-chr7-79729830-2	chr7	79729330	79730330	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175640, intron 3 of 8)	intron (NM_175640, intron 3 of 8)	2946.0	NM_175640	103968.0	Mm.254917	NM_175640	ENSMUSG00000030546	Plin1	6030432J05Rik|Peri|Plin	perilipin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146246308-2	chr5	146245856	146246856	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153599, intron 1 of 12)	intron (NM_153599, intron 1 of 12)	15106.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-22150498-2	chr3	22149998	22150998	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 2 of 15)	MER44D|DNA|TcMar-Tigger	73846.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-22017400-1	chr10	22016900	22017900	+	627.0	f0_balb.idr	Intergenic	Intergenic	22734.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	1.5	0.5	3.0	0.0	11.5	2.0
Merged-chr15-81018956-2	chr15	81018456	81019456	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 8 of 13)	intron (NM_001082536, intron 8 of 13)	41191.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70929118-1	chr14	70928618	70929618	+	627.0	f0_balb.idr	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	39011.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	6.0	7.5	7.5	18.5	27.5	33.0
Merged-chr5-64865450-3	chr5	64864939	64865939	+	627.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61916.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164531342-2	chr2	164530842	164531842	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19188.0	NR_152178	670507.0	Mm.404686	NR_152178		Gm14317	-	predicted gene 14317	ncRNA	0.0	0.0	0.5	0.0	0.5	2.5
Merged-chr17-17829262-2	chr17	17828762	17829762	+	627.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029536)	promoter-TSS (NR_029536)	-926.0	NR_029536	387230.0		NR_029536	ENSMUSG00000065396	Mir99b	Mirn99b|mmu-mir-99b	microRNA 99b	ncRNA	17.0	2.5	3.5	4.5	11.0	5.0
Merged-chr8-46150911-2	chr8	46150411	46151411	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12740.0	NM_025747	66756.0	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430	cilia and flagella associated protein 97	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64090283-2	chr15	64089783	64090783	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 28 of 28)	intron (NM_001276461, intron 28 of 28)	-29835.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	9.5	52.5	30.5	19.5	47.0	28.0
Merged-chr5-17899337-2	chr5	17898837	17899837	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10378.0	NM_001159558	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92020046-2	chr16	92019546	92020546	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38276.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-54608929-2	chr9	54608429	54609429	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053178, intron 13 of 13)	intron (NM_053178, intron 13 of 13)	22418.0	NM_029573	67834.0	Mm.279195	NM_029573	ENSMUSG00000032279	Idh3a	1110003P10Rik|1500012E04Rik|AA407078|AI316514	isocitrate dehydrogenase 3 (NAD+) alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56700321-2	chr18	56699821	56700821	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-7492.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156025595-1	chr2	156025095	156026095	+	627.0	f1_balb.idr	intron (NM_001136556, intron 35 of 44)	intron (NM_001136556, intron 35 of 44)	17567.0	NM_001356413	66366.0	Mm.141276	NM_025516	ENSMUSG00000005881	Ergic3	2310015B14Rik|AV318804|CGI-54|D2Ucla1|NY-BR-84|Sdbcag84	ERGIC and golgi 3	protein-coding	1.5	3.0	3.0	4.5	3.0	2.0
Merged-chr5-96790177-1	chr5	96789677	96790677	+	627.0	f1_balb.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-3208.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	0.0	0.0	4.5	0.0	0.0	2.5
Merged-chr2-27717422-2	chr2	27716922	27717922	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	6839.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132748743-2	chr7	132748243	132749243	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347630, intron 3 of 3)	intron (NM_001347630, intron 3 of 3)	28173.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-95384348-2	chr1	95383848	95384848	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	70720.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28447238-2	chr7	28446738	28447738	+	627.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_022024)	TTS (NM_022024)	-4747.0	NM_030562	80749.0	Mm.483073	NM_030562	ENSMUSG00000030600	Lrfn1	BC004018|SALM2|Semo1	leucine rich repeat and fibronectin type III domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72109086-2	chr6	72108586	72109586	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	11478.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80382590-1	chr7	80382090	80383090	+	627.0	f1_balb.idr	exon (NM_010194, exon 9 of 19)	exon (NM_010194, exon 9 of 19)	5356.0	NM_010194	14159.0	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	1.5	0.0	2.5	0.0	3.5	0.0
Merged-chr1-184700911-3	chr1	184700412	184701412	+	627.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11585.0	NR_040627	74971.0	Mm.410816	NR_040627	ENSMUSG00000092578	4930488B22Rik	-	RIKEN cDNA 4930488B22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-47037531-3	chr4	47037142	47038142	+	627.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151464, intron 8 of 16)	intron (NR_151464, intron 8 of 16)	19664.0	NR_151464	75691.0	Mm.86866	NM_001024136	ENSMUSG00000066191	Anks6	2210417J20Rik|Ankrd14|Gm635|SamCystin|Samd6|b2b1801.1Clo	ankyrin repeat and sterile alpha motif domain containing 6	protein-coding	4.5	1.5	6.0	2.5	2.5	0.0
Merged-chr4-86555742-1	chr4	86555242	86556242	+	627.0	f1_c57bl6.idr	intron (NM_001081096, intron 1 of 3)	ID_B1|SINE|B4	2561.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	0.0	0.5	0.0	0.0	0.5	0.0
Merged-chr7-5058047-1	chr7	5057547	5058547	+	627.0	f0_c57.idr	exon (NM_001290432, exon 4 of 6)	exon (NM_001290432, exon 4 of 6)	1321.0	NM_146178	232821.0	Mm.482157	NM_146178	ENSMUSG00000035228	Ccdc106	BC018462	coiled-coil domain containing 106	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-24256601-2	chr6	24256101	24257101	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-88509.0	NM_019481	55961.0	Mm.19299	NM_019481	ENSMUSG00000029700	Slc13a1	AI314066|AI987826|NaSi-1|Nas1	solute carrier family 13 (sodium/sulfate symporters), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91969666-1	chr2	91969166	91970166	+	627.0	f1_c57bl6.idr	Intergenic	ID|SINE|ID	-6103.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	1.5	11.5	2.5	4.5	5.5	9.0
Merged-chr6-40581453-2	chr6	40580953	40581953	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038604, intron 5 of 6)	RSINE1|SINE|B4	4352.0	NM_021364	23845.0	Mm.103765	NM_021364	ENSMUSG00000029915	Clec5a	Clecsf5|Ly100|MDL-1|Mdl1	C-type lectin domain family 5, member a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135663425-2	chr1	135662925	135663925	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56638.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25512457-2	chr9	25511957	25512957	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	30860.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-81139815-2	chr3	81139315	81140315	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357746, intron 2 of 6)	URR1B|DNA|hAT-Charlie	103399.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	5.0	36.5	9.5	4.0	27.5	10.5
Merged-chr4-39616641-2	chr4	39616163	39617163	+	627.0	f0_balb.idr|f1_balb.idr	Intergenic	Lx9|LINE|L1	166370.0	NM_001081095	75471.0	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding	9.5	5.5	7.0	5.0	6.5	7.0
Merged-chr2-25353267-2	chr2	25352767	25353767	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031843, intron 10 of 12)	intron (NM_031843, intron 10 of 12)	3065.0	NM_031843	83768.0	Mm.21440	NM_031843	ENSMUSG00000026958	Dpp7	DPPII|Dpp2|QPP	dipeptidylpeptidase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80420792-2	chr18	80420292	80421292	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 11 of 12)	intron (NM_026295, intron 11 of 12)	48875.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	9.5	10.5	4.5	18.0	9.0	8.0
Merged-chr4-32304439-1	chr4	32303939	32304939	+	627.0	f0_balb.idr	Intergenic	Intergenic	-112996.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.0	0.0	2.0	0.0	0.0	0.5
Merged-chr14-91604532-1	chr14	91604032	91605032	+	627.0	f1_balb.idr	Intergenic	Lx5c|LINE|L1	1477641.0	NR_045712	74967.0	Mm.390704	NR_045712	ENSMUSG00000115001	4930474H20Rik	-	RIKEN cDNA 4930474H20 gene	ncRNA	7.0	12.0	2.5	2.5	3.5	2.0
Merged-chr9-114887858-3	chr9	114887344	114888344	+	627.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-43692.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	0.0	3.0	0.0	0.0	3.5	0.0
Merged-chr13-36088399-1	chr13	36087899	36088899	+	627.0	f0_balb.idr	intron (NM_201358, intron 2 of 2)	intron (NM_201358, intron 2 of 2)	28958.0	NM_201358	380840.0	Mm.390576	NM_201358	ENSMUSG00000046573	Lyrm4	BC034664|Gm903	LYR motif containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr10-35994383-2	chr10	35993883	35994883	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR9A2|LTR|ERVK	-512424.0	NM_001253355	319415.0	Mm.332442	NM_001081208	ENSMUSG00000044499	Hs3st5	D930005L05Rik|Gm1151|Hs3ost5	heparan sulfate (glucosamine) 3-O-sulfotransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-146399842-1	chr2	146399342	146400342	+	627.0	f0_balb.idr	intron (NM_001033348, intron 21 of 40)	intron (NM_001033348, intron 21 of 40)	112162.0	NM_001033348	241694.0	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding	0.0	1.0	4.0	0.5	1.0	1.0
Merged-chr4-63583456-2	chr4	63582956	63583956	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144905, intron 9 of 9)	intron (NM_144905, intron 9 of 9)	17308.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-40085449-2	chr1	40084949	40085949	+	627.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360800)	promoter-TSS (NM_001360800)	402.0	NR_037980	100047133.0	Mm.447052	NR_037980	ENSMUSG00000097899	Gm16894	-	predicted gene, 16894	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119877307-2	chr8	119876807	119877807	+	627.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_146219)	TTS (NM_146219)	15002.0	NM_146219	234796.0	Mm.86446	NM_146219	ENSMUSG00000031828	Klhl36	-	kelch-like 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76169306-1	chr14	76168806	76169806	+	627.0	f0_balb.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	58415.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-9706287-2	chr6	9705787	9706787	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2-int|LTR|ERVL-MaLR	756268.0	NM_008751	18231.0	Mm.46954	NM_008751	ENSMUSG00000046178	Nxph1	C130005L03Rik	neurexophilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-29994631-2	chr5	29994131	29995131	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-18483.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156673402-1	chr1	156672902	156673902	+	627.0	f1_c57bl6.idr	intron (NM_023141, intron 2 of 5)	intron (NM_023141, intron 2 of 5)	937.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	34.5	67.0	54.0	47.5	102.5	85.0
Merged-chr2-121143481-1	chr2	121142981	121143981	+	627.0	f0_c57.idr	intron (NM_001290812, intron 3 of 8)	intron (NM_001290812, intron 3 of 8)	1388.0	NM_029475	75894.0	Mm.384805	NM_029475	ENSMUSG00000027259	Adal	4930578F03Rik	adenosine deaminase-like	protein-coding	6.5	18.0	9.0	3.5	19.0	5.0
Merged-chr3-103211246-2	chr3	103210746	103211746	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR41|LTR|ERV1	39591.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	3.0	6.0	3.0	0.5	1.5	1.5
Merged-chr15-75842998-2	chr15	75842498	75843498	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-1090.0	NM_172121	223642.0	Mm.209800	NM_172121	ENSMUSG00000075600	Zc3h3	BC049953|Kiaa0150|Smicl|Zc3hdc3	zinc finger CCCH type containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100354759-2	chr11	100354259	100355259	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359052, intron 1 of 12)	intron (NM_001359052, intron 1 of 12)	1369.0	NM_001359052	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123997276-2	chr5	123996776	123997776	+	627.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105999)	TTS (NR_105999)	424.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100161033-1	chr12	100160533	100161533	+	627.0	f1_c57bl6.idr	Intergenic	ORR1A0|LTR|ERVL-MaLR	-1380.0	NM_183155	217827.0	Mm.224076	NM_183155	ENSMUSG00000021179	Nrde2	6720454P05Rik	nrde-2 necessary for RNA interference, domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9707825-2	chr3	9707325	9708325	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	-97740.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120504384-2	chr5	120503945	120504945	+	627.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023625)	promoter-TSS (NM_023625)	-822.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95678430-3	chr10	95677948	95678948	+	627.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-114302.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106394927-2	chr1	106394427	106395427	+	627.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133821)	TTS (NM_133821)	151704.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6464194-2	chr2	6463694	6464694	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	111458.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31772053-2	chr2	31771553	31772553	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	11880.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109970514-2	chr8	109970014	109971014	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8309.0	NM_028584	73608.0	Mm.86833	NM_028584	ENSMUSG00000001672	Marveld3	1810006A16Rik|AI642133|Marvd3|Mrvldc3	MARVEL (membrane-associating) domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104632973-2	chr8	104632473	104633473	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-1652.0	NM_019662	56437.0	Mm.29467	NM_019662	ENSMUSG00000031880	Rrad	REM3|Rad	Ras-related associated with diabetes	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15631507-1	chr17	15631007	15632007	+	627.0	f0_balb.idr	promoter-TSS (NR_045431)	promoter-TSS (NR_045431)	-281.0	NR_045431	71008.0	Mm.399492	NR_045431		4933401D09Rik	-	RIKEN cDNA 4933401D09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7045532-1	chr19	7045032	7046032	+	627.0	f1_balb.idr	Intergenic	Intergenic	-5506.0	NM_016737	20867.0	Mm.258633	NM_016737	ENSMUSG00000024966	Stip1	Hop|Sti1|p60	stress-induced phosphoprotein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35771882-3	chr16	35771414	35772414	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152314, intron 1 of 8)	ORR1D1|LTR|ERVL-MaLR	1528.0	NM_175111	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	3.5	0.0	2.0	5.5	0.0	1.5
Merged-chr10-8758649-1	chr10	8758149	8759149	+	627.0	f0_balb.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	127421.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	50.0	92.0	82.5	74.0	84.0	86.5
Merged-chr18-52457889-2	chr18	52457378	52458378	+	627.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7815.0	NM_026040	67222.0	Mm.100617	NM_026040	ENSMUSG00000024528	Srfbp1	2810036K01Rik|p49/STRAP	serum response factor binding protein 1	protein-coding	6.5	22.0	4.0	8.0	2.5	0.5
Merged-chr12-34504432-1	chr12	34503932	34504932	+	627.0	f0_c57.idr	intron (NM_001271386, intron 4 of 27)	intron (NM_001271386, intron 4 of 27)	24457.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-135148868-1	chr6	135148368	135149368	+	627.0	f1_balb.idr	intron (NM_013546, intron 3 of 3)	intron (NM_013546, intron 3 of 3)	19347.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	0.0	4.0	7.0	0.0	0.5	1.5
Merged-chr11-75547541-1	chr11	75547041	75548041	+	627.0	f1_c57bl6.idr	intron (NM_001199284, intron 5 of 13)	intron (NM_001199284, intron 5 of 13)	-3888.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	11.5	46.0	36.0	37.0	61.5	38.5
Merged-chr9-14309570-2	chr9	14309070	14310070	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030261, intron 3 of 9)	intron (NM_030261, intron 3 of 9)	33269.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137304405-1	chr5	137303905	137304905	+	627.0	f1_c57bl6.idr	intron (NM_001359602, intron 2 of 19)	intron (NM_001359602, intron 2 of 19)	3269.0	NM_031405	83701.0	Mm.387734	NM_031405	ENSMUSG00000037364	Srrt	2810019G02Rik|ASR2A|ASR2B|ASR2C|ASR2D|Ars2|Asr2	serrate RNA effector molecule homolog (Arabidopsis)	protein-coding	10.0	2.0	11.0	2.0	0.0	0.0
Merged-chr13-85286762-2	chr13	85286262	85287262	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145452, intron 1 of 24)	B3|SINE|B2	2724.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	0.0	6.0	5.5	0.0	6.0	5.5
Merged-chr13-44917382-2	chr13	44916817	44917817	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205043, intron 17 of 17)	intron (NM_001205043, intron 17 of 17)	84779.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21127748-1	chr5	21127248	21128248	+	627.0	f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-48531.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118797586-2	chr9	118797086	118798086	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 3 of 13)	intron (NM_001113514, intron 3 of 13)	85894.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-39635711-1	chr8	39635211	39636211	+	627.0	f1_balb.idr	intron (NM_001113326, intron 1 of 9)	(CCCCCT)n|Simple_repeat|Simple_repeat	6967.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	15.0	15.0	12.0	8.0	17.0	14.5
Merged-chr8-121654849-2	chr8	121654349	121655349	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2916.0	NM_080855	142682.0	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-123321880-1	chr3	123321380	123322380	+	627.0	f1_balb.idr	intron (NM_027135, intron 8 of 22)	intron (NM_027135, intron 8 of 22)	54384.0	NM_027135	69608.0	Mm.29293	NM_027135	ENSMUSG00000039234	Sec24d	2310020L09Rik|Gm1349	Sec24 related gene family, member D (S. cerevisiae)	protein-coding	0.0	1.5	8.0	4.5	2.5	2.5
Merged-chr9-104373513-1	chr9	104373013	104374013	+	627.0	f1_balb.idr	Intergenic	Intergenic	-35791.0	NM_207668	56318.0	Mm.19941	NM_019807	ENSMUSG00000032561	Acpp	5'-NT|A030005E02Rik|FRAP|Lap|PAP|Ppal	acid phosphatase, prostate	protein-coding	4.5	0.0	0.5	4.5	0.0	1.0
Merged-chr11-108041862-3	chr11	108041354	108042354	+	627.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 5 of 16)	intron (NM_011101, intron 5 of 16)	45006.0	NR_106082	102465705.0		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91717083-2	chr6	91716583	91717583	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	MIR3|SINE|MIR	33016.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-14246703-2	chr9	14246203	14247203	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29598.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-82072240-2	chr13	82071740	82072740	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	288993.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102893170-2	chr11	102892670	102893670	+	627.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010277, exon 6 of 9)	exon (NM_010277, exon 6 of 9)	4030.0	NM_001131020	14580.0	Mm.1239	NM_010277	ENSMUSG00000020932	Gfap	AI836096	glial fibrillary acidic protein	protein-coding	1.0	0.0	1.0	1.0	0.0	1.0
Merged-chr4-122849044-2	chr4	122848555	122849555	+	626.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008917, intron 5 of 8)	B1_Mur4|SINE|Alu	12828.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	8.0	47.5	23.5	3.5	5.5	12.0
Merged-chr7-143066805-2	chr7	143066305	143067305	+	626.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133655, intron 6 of 7)	intron (NM_133655, intron 6 of 7)	-2563.0	NM_020285	56844.0	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33283257-2	chr2	33282757	33283757	+	626.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290570, intron 4 of 16)	intron (NM_001290570, intron 4 of 16)	67296.0	NM_011923	26360.0	Mm.208919	NM_011923	ENSMUSG00000004105	Angptl2	AI593246|AW260363|Arp2	angiopoietin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140835733-3	chr5	140835233	140836233	+	626.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	-5302.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27261032-2	chr3	27260528	27261528	+	626.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-56049.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79987885-2	chr10	79987385	79988385	+	626.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007725)	promoter-TSS (NM_007725)	-715.0	NM_007725	12798.0	Mm.157770	NM_007725	ENSMUSG00000004665	Cnn2	AA408047|AI324678|Calpo2	calponin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37494376-2	chr19	37493876	37494876	+	626.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29122.0	NR_131009	78640.0	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	0.0	7.0	7.0	0.0	7.0	7.0
Merged-chr12-35889982-2	chr12	35889487	35890487	+	626.75	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-35634.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	5.0	33.5	27.5	18.5	26.5	30.5
Merged-chr6-31189216-2	chr6	31188716	31189716	+	626.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 1 of 2)	intron (NR_110470, intron 1 of 2)	29258.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143062048-2	chr7	143061548	143062548	+	626.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_133655, intron 1 of 7)	ID_B1|SINE|B4	-7320.0	NM_020285	56844.0	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	3.5	6.0	2.5	1.5	2.0	4.0
Merged-chr17-7176652-3	chr17	7176151	7177151	+	626.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011299, intron 1 of 20)	intron (NM_011299, intron 1 of 20)	6536.0	NM_011299	20112.0	Mm.268383	NM_011299	ENSMUSG00000023809	Rps6ka2	90kDa|D17Wsu134e|Rps6ka-rs1|Rsk3|p90rsk|pp90rsk	ribosomal protein S6 kinase, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32464861-3	chr5	32464360	32465360	+	626.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172707, intron 1 of 7)	intron (NM_172707, intron 1 of 7)	5890.0	NM_172707	19046.0	Mm.241931	NM_172707	ENSMUSG00000014956	Ppp1cb	1200010B19	protein phosphatase 1, catalytic subunit, beta isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91201465-2	chr2	91200965	91201965	+	626.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1447.0	NM_001357067	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21781653-3	chr19	21781176	21782176	+	626.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031997, intron 2 of 24)	intron (NM_031997, intron 2 of 24)	3336.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-149173737-3	chr3	149173243	149174243	+	626.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100994.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	3.0	4.0	2.0	10.0	3.0	10.0
Merged-chr5-64919025-3	chr5	64918511	64919511	+	626.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13688.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	2.0	3.0	0.5	2.0	3.0	0.5
Merged-chr3-108146755-2	chr3	108146255	108147255	+	626.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010306)	promoter-TSS (NM_010306)	-603.0	NM_010306	14679.0	Mm.271703	NM_010306	ENSMUSG00000000001	Gnai3	AI158965|AW537698|Galphai3|Gnai-3	guanine nucleotide binding protein (G protein), alpha inhibiting 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35826888-3	chr17	35826285	35827285	+	626.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_008027, intron 8 of 12)	intron (NM_008027, intron 8 of 12)	3428.0	NM_008027	14251.0	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	1.5	0.0	2.0	2.0	1.0	1.0
Merged-chr11-70509855-2	chr11	70509355	70510355	+	626.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_029360, exon 2 of 5)	exon (NM_029360, exon 2 of 5)	4581.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111423786-2	chr12	111423286	111424286	+	626.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_028807, exon 4 of 13)	exon (NM_028807, exon 4 of 13)	6341.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34417696-2	chr10	34417196	34418196	+	626.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_176968, intron 1 of 11)	MIR|SINE|MIR	855.0	NM_176968	319638.0	Mm.73467	NM_176968	ENSMUSG00000039480	Nt5dc1	6030401B09Rik|AW987726|Nt5c2l1	5'-nucleotidase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120747012-2	chr5	120746476	120747476	+	626.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347448, intron 2 of 11)	ORR1E|LTR|ERVL-MaLR	2872.0	NM_145227	246728.0	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	11.5	0.0	4.0	3.0	2.5	1.5
Merged-chr2-170208470-2	chr2	170207970	170208970	+	626.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65795.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9494298-3	chr13	9493807	9494807	+	626.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 2 of 36)	intron (NM_001081426, intron 2 of 36)	217782.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110466358-2	chr9	110465858	110466858	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360306, intron 1 of 9)	intron (NM_001360306, intron 1 of 9)	10336.0	NM_001360306	270201.0	Mm.41744	NM_177771	ENSMUSG00000054792	Klhl18	A930041K15|AW545966	kelch-like 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-38063004-2	chr5	38062504	38063504	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359398, intron 1 of 9)	intron (NM_001359398, intron 1 of 9)	23774.0	NM_026959	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	3.0	0.5	1.0	0.0	0.0	1.5
Merged-chr13-119615350-2	chr13	119614850	119615850	+	626.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8469.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-25749063-2	chr13	25748563	25749563	+	626.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	217253.0	NR_045062	100503530.0	Mm.86763	NR_045062	ENSMUSG00000086531	Gm11351	-	predicted gene 11351	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-44959881-2	chr2	44959381	44960381	+	626.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63296.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37451839-2	chr10	37451339	37452339	+	626.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-312913.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-50939581-2	chr2	50939081	50940081	+	626.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29897.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70977135-2	chr12	70976635	70977635	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011184, intron 1 of 10)	intron (NM_011184, intron 1 of 10)	2512.0	NM_011184	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31527668-2	chr15	31527168	31528168	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172606, intron 1 of 25)	B3|SINE|B2	3369.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-117380926-2	chr7	117380426	117381426	+	626.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175645)	promoter-TSS (NM_175645)	-53.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20771284-2	chr14	20770784	20771784	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039139, intron 3 of 18)	intron (NM_001039139, intron 3 of 18)	22804.0	NM_001039138	12325.0	Mm.235182	NM_178597	ENSMUSG00000021820	Camk2g	Camkg	calcium/calmodulin-dependent protein kinase II gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55809952-2	chr16	55809452	55810452	+	626.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	12186.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62075246-2	chr11	62074746	62075746	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310526, intron 3 of 7)	L2a|LINE|L2	-1778.0	NM_001029936	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155094364-2	chr1	155093864	155094864	+	626.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5272.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6406972-2	chr15	6406472	6407472	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	20224.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12028369-2	chr13	12027869	12028869	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023868, intron 1 of 104)	intron (NM_023868, intron 1 of 104)	78576.0	NM_023868	20191.0	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-110866951-3	chr13	110866455	110867455	+	626.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36544.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101844276-2	chr7	101843776	101844776	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303239, intron 2 of 5)	intron (NM_001303239, intron 2 of 5)	1055.0	NM_001303231	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75908386-2	chr15	75907886	75908886	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029663, intron 1 of 9)	intron (NM_029663, intron 1 of 9)	958.0	NM_001285433	66656.0	Mm.258927	NM_023240	ENSMUSG00000055762	Eef1d	EF-1-delta	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55761288-2	chr14	55760788	55761788	+	626.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020490)	promoter-TSS (NM_020490)	-140.0	NM_020490	57260.0	Mm.159670	NM_020490	ENSMUSG00000040432	Ltb4r2	5830462O07Rik|BLT2|LTB4-R 2|LTB4-R-2|LTB4-R2	leukotriene B4 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171638189-2	chr1	171637689	171638689	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144539, intron 5 of 7)	(TG)n|Simple_repeat|Simple_repeat	3711.0	NR_106151	102465784.0		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	4.5	49.5	27.0	8.0	20.0	15.5
Merged-chr7-90020698-2	chr7	90020198	90021198	+	626.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8461.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	36.0	71.5	58.5	17.5	65.5	44.5
Merged-chr18-47155440-2	chr18	47154940	47155940	+	626.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	196564.0	NM_178377	69456.0	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2|Tg(Vav1-icre)A2Kio|Vav-cre|Vav-iCre|Vav1-Cre|VavCre	COMM domain containing 10	protein-coding	0.0	4.0	4.0	0.0	4.0	4.0
Merged-chr11-117204493-2	chr11	117203993	117204993	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 1 of 11)	intron (NM_001113486, intron 1 of 11)	4832.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66463436-2	chr15	66462936	66463936	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019457, intron 4 of 11)	LFSINE_Vert|SINE|tRNA	37474.0	NM_019457	54562.0	Mm.244890	NM_019457	ENSMUSG00000022375	Lrrc6	LRTP	leucine rich repeat containing 6 (testis)	protein-coding	0.0	1.0	0.0	0.0	0.5	1.5
Merged-chr17-5321763-2	chr17	5321263	5322263	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 13 of 19)	intron (NM_001085355, intron 13 of 19)	97004.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5714078-2	chr17	5713578	5714578	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 4 of 8)	intron (NM_146073, intron 4 of 8)	-84579.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91139149-2	chr2	91138649	91139649	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177719, intron 33 of 34)	intron (NM_001177719, intron 33 of 34)	21005.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-44132332-2	chr8	44131832	44132832	+	626.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-432841.0	NM_001079931	384814.0	Mm.491652	NM_001079931		Gm5347	EG384814	predicted gene 5347	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85577772-2	chr12	85577272	85578272	+	626.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	-21333.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47777727-2	chr9	47777227	47778227	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	40481.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	0.0	6.0	0.0	0.0	0.0	0.0
Merged-chr2-30701173-2	chr2	30700673	30701673	+	626.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-20037.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112745007-2	chr12	112744507	112745507	+	626.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001024602, exon 19 of 19)	3' UTR (NM_001024602, exon 19 of 19)	11685.0	NR_105905	102466989.0		NR_105905	ENSMUSG00000099165	Mir6940	Gm27655|mmu-mir-6940	microRNA 6940	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140386377-2	chr5	140385877	140386877	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172277, intron 1 of 10)	intron (NM_172277, intron 1 of 10)	2931.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-58370864-2	chr10	58370364	58371364	+	626.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201242)	promoter-TSS (NM_201242)	-590.0	NM_201242	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101917817-2	chr5	101917317	101918317	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 22 of 66)	intron (NM_172882, intron 22 of 66)	152104.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.5	1.5	2.0	0.5	1.5	2.0
Merged-chr12-112961419-2	chr12	112960919	112961919	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028193, intron 16 of 17)	intron (NM_028193, intron 16 of 17)	-15063.0	NM_001145900	399566.0	Mm.440140	NM_201646	ENSMUSG00000002803	Btbd6	-	BTB (POZ) domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73585465-2	chr2	73584965	73585965	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153820, intron 1 of 1)	intron (NR_153820, intron 1 of 1)	605.0	NR_153820	102633437.0		NR_153820		Chrna1os	Gm13705|Gm31264	cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle), opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-46536450-2	chr5	46535950	46536950	+	626.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-604041.0	NR_110478	78106.0	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155297752-2	chr2	155297252	155298252	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004721, intron 9 of 11)	intron (NM_001004721, intron 9 of 11)	21388.0	NR_046364	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	3.0	10.0	33.5	2.0	24.5	9.0
Merged-chr15-28403452-2	chr15	28402952	28403952	+	626.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133365, exon 61 of 79)	exon (NM_133365, exon 61 of 79)	199686.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-13306130-2	chr17	13305630	13306630	+	626.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CTGTG)n|Simple_repeat|Simple_repeat	-48442.0	NM_001167578	100041352.0	Mm.432087	NM_001167578	ENSMUSG00000052469	Tcp10c	D17Leh66C|D17Leh66ca|Gm9880|T66C-a|Tcp-10c	t-complex protein 10c	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-44048870-2	chr14	44048370	44049370	+	626.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42452.0	NM_001011876	630952.0		NM_001011876	ENSMUSG00000072598	Ang6	EG630952	angiogenin, ribonuclease A family, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23866167-3	chr18	23865665	23866665	+	626.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	62195.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-37927302-3	chr8	37926812	37927812	+	626.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145841, intron 2 of 7)	intron (NM_145841, intron 2 of 7)	324890.0	NR_029884	723860.0		NR_029884	ENSMUSG00000065457	Mir383	Mirn383|mir-383|mmu-mir-383	microRNA 383	ncRNA	13.0	4.5	4.5	4.5	2.0	2.5
Merged-chr15-78270768-3	chr15	78270260	78271260	+	626.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	14089.0	NR_106137	102465776.0		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	8.5	10.0	5.5	3.5	0.5	5.5
Merged-chr7-128133256-3	chr7	128132740	128133740	+	626.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021334, intron 6 of 29)	intron (NM_021334, intron 6 of 29)	3672.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80258555-2	chr12	80258055	80259055	+	626.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 1 of 20)	intron (NM_134156, intron 1 of 20)	1816.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-55702556-2	chr17	55702068	55703068	+	626.25	f0_balb.idr|f1_balb.idr	intron (NR_151542, intron 3 of 16)	intron (NR_151542, intron 3 of 16)	10068.0	NM_028370	72836.0	Mm.177073	NM_028370	ENSMUSG00000024174	Pot1b	2810458H16Rik	protection of telomeres 1B	protein-coding	2.0	6.5	0.5	5.0	5.0	6.0
Merged-chr11-118219064-2	chr11	118218564	118219564	+	626.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-6322.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-72469442-2	chr11	72468919	72469919	+	626.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_153060, intron 2 of 12)	intron (NM_153060, intron 2 of 12)	5608.0	NM_001276383	216892.0	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102247329-2	chr11	102246829	102247829	+	626.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1553.0	NM_153544	217216.0	Mm.247335	NM_153544	ENSMUSG00000034773	BC030867	-	cDNA sequence BC030867	protein-coding	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr17-27908192-3	chr17	27907697	27908697	+	626.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026836, exon 2 of 6)	5' UTR (NM_026836, exon 2 of 6)	1045.0	NM_026836	68776.0	Mm.267998	NM_026836	ENSMUSG00000024218	Taf11	1110038O14Rik|AI115401|AL024207|AW552398|PRO214|TAF2I|TAFII28	TATA-box binding protein associated factor 11	protein-coding	7.0	31.0	8.0	0.5	22.0	7.0
Merged-chr11-19026822-3	chr11	19026309	19027309	+	626.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7840.0	NM_010789	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25635028-2	chr14	25634528	25635528	+	626.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 6 of 23)	intron (NM_183208, intron 6 of 23)	31515.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-97463556-1	chr16	97463056	97464056	+	626.166687	f0_balb.idr	promoter-TSS (NM_010846)	promoter-TSS (NM_010846)	-650.0	NR_003520	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32469235-2	chr9	32468735	32469735	+	626.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 2 of 8)	intron (NM_008026, intron 2 of 8)	72217.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-53101297-2	chr9	53100797	53101797	+	626.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029936, intron 17 of 17)	intron (NM_029936, intron 17 of 17)	146815.0	NM_029936	77591.0	Mm.133560	NM_029936	ENSMUSG00000053289	Ddx10	4632415A01Rik|AI646054	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding	0.0	0.0	0.0	0.0	1.5	1.0
Merged-chr14-115054507-2	chr14	115054007	115055007	+	626.150024	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	10080.0	NR_029816	751549.0		NR_029816	ENSMUSG00000076062	Mir92-1	Mirn92-1|mir-92a-1	microRNA 92-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121641449-3	chr14	121640944	121641944	+	626.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081039, intron 11 of 53)	intron (NM_001081039, intron 11 of 53)	56973.0	NM_001347596	105445.0	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	1.0	0.0	6.5	0.0	0.0	1.0
Merged-chr14-57665874-3	chr14	57665409	57666409	+	626.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020506)	promoter-TSS (NM_020506)	-953.0	NM_020506	57258.0	Mm.202747	NM_020506	ENSMUSG00000021952	Xpo4	B430309A01Rik|mKIAA1721	exportin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46446678-3	chr18	46446172	46447172	+	626.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	19144.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0.5	3.5	1.5	2.0	15.0	8.5
Merged-chr13-62952835-3	chr13	62952338	62953338	+	626.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12055.0	NM_001289926	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	2.5	6.0	19.0	8.0	4.5	2.0
Merged-chr2-32888681-2	chr2	32888181	32889181	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146119, intron 1 of 13)	intron (NM_146119, intron 1 of 13)	12547.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-157537875-2	chr1	157537375	157538375	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159986, intron 9 of 25)	intron (NM_001159986, intron 9 of 25)	11705.0	NM_001159986	89867.0	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding	0.0	7.5	0.0	0.0	1.0	3.5
Merged-chr8-36657999-1	chr8	36657499	36658499	+	626.0	f1_c57bl6.idr	intron (NM_001194940, intron 5 of 17)	intron (NM_001194940, intron 5 of 17)	-44056.0	NM_015802	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	8.5	5.0	0.0	4.5	1.0	1.0
Merged-chr10-81481631-2	chr10	81481131	81482131	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176954, intron 1 of 11)	intron (NM_176954, intron 1 of 11)	1078.0	NM_176954	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-142414800-2	chr6	142414300	142415300	+	626.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001242345, exon 4 of 6)	exon (NM_001242345, exon 4 of 6)	1369.0	NM_001242345	319552.0	Mm.39649	NM_001242345	ENSMUSG00000071112	Spx	B230216G23Rik|Npq	spexin hormone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83369444-2	chr6	83368944	83369944	+	626.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_183138, exon 11 of 11)	exon (NM_183138, exon 11 of 11)	19960.0	NM_175277	78653.0	Mm.391470	NM_175277	ENSMUSG00000045160	Bola3	1810056O20Rik	bolA-like 3 (E. coli)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50503846-2	chr17	50503346	50504346	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5701.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	2.0	40.5	19.0	7.0	12.5	13.0
Merged-chr11-107315326-2	chr11	107314826	107315826	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	intron (NR_153311, intron 4 of 9)	-125945.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67459573-1	chr7	67459073	67460073	+	626.0	f1_c57bl6.idr	Intergenic	Intergenic	-86715.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	91.5	151.0	118.0	68.0	155.5	140.5
Merged-chr10-118979957-2	chr10	118979403	118980403	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52760.0	NR_110482	216377.0	Mm.208936	NR_110482	ENSMUSG00000112854	Gm38403	C230029M16	predicted gene, 38403	ncRNA	0.0	0.5	4.5	0.0	0.0	2.0
Merged-chr2-26440883-2	chr2	26440383	26441383	+	626.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153125, exon 2 of 30)	exon (NM_153125, exon 2 of 30)	4333.0	NM_153125	227648.0	Mm.206371	NM_153125	ENSMUSG00000026924	Sec16a	AU024582|C230052J16Rik	SEC16 homolog A, endoplasmic reticulum export factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50892146-2	chr15	50891646	50892646	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2105.0	NM_032000	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8089059-2	chr11	8088559	8089559	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	575476.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	2.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-78137583-2	chr18	78137083	78138083	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171011, intron 1 of 8)	intron (NM_001171011, intron 1 of 8)	4536.0	NM_001171011	108052.0	Mm.33832	NM_028122	ENSMUSG00000059336	Slc14a1	2610507K20Rik|3021401A05Rik|UT-B|Utb1	solute carrier family 14 (urea transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70630835-2	chr11	70630335	70631335	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-8287.0	NM_010326	14723.0	Mm.377085	NM_010326	ENSMUSG00000050675	Gp1ba	GP-Ib alpha|GPIba|GPIbalpha	glycoprotein 1b, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21010246-2	chr11	21009746	21010746	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81078.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70373999-2	chr11	70373499	70374499	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21968.0	NM_009660	11687.0	Mm.4584	NM_009660	ENSMUSG00000018924	Alox15	12-LO|12/15-LO|15-LOX|Alox12l|L-12LO	arachidonate 15-lipoxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79066281-2	chr15	79065781	79066781	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-3422.0	NM_144849	223690.0	Mm.24262	NM_144849	ENSMUSG00000033055	Ankrd54	C730048E16Rik|EST1068184|EST475269|Liar	ankyrin repeat domain 54	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100527238-1	chr7	100526738	100527738	+	626.0	f0_balb.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-9862.0	NM_183270	68185.0	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67183249-1	chr18	67182749	67183749	+	626.0	f0_balb.idr	intron (NM_177137, intron 4 of 11)	intron (NM_177137, intron 4 of 11)	-22110.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	17.5	0.0	2.5	18.0	12.5	23.5
Merged-chr7-45432849-2	chr7	45432349	45433349	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011304, intron 1 of 14)	intron (NM_011304, intron 1 of 14)	1615.0	NM_011304	20174.0	Mm.34410	NM_011304	ENSMUSG00000003868	Ruvbl2	mp47|p47	RuvB-like protein 2	protein-coding	0.0	0.0	1.5	0.0	8.5	0.0
Merged-chr15-78243398-2	chr15	78242898	78243898	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1413.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	0.0	7.0	1.5	0.0	0.0	1.5
Merged-chr4-62686899-2	chr4	62686400	62687400	+	626.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_001310706, intron 1 of 6)	intron (NM_001310706, intron 1 of 6)	12926.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	6.5	4.0	2.5	3.0	5.0	8.5
Merged-chr8-71351965-1	chr8	71351465	71352465	+	626.0	f1_balb.idr	exon (NM_001142323, exon 25 of 39)	exon (NM_001142323, exon 25 of 39)	-14883.0	NM_001145780	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	0.0	3.5	0.0	0.0	0.0	0.0
Merged-chr5-137309541-1	chr5	137309041	137310041	+	626.0	f1_c57bl6.idr	TTS (NM_011639)	TTS (NM_011639)	-1867.0	NM_001109909	83701.0	Mm.387734	NM_031405	ENSMUSG00000037364	Srrt	2810019G02Rik|ASR2A|ASR2B|ASR2C|ASR2D|Ars2|Asr2	serrate RNA effector molecule homolog (Arabidopsis)	protein-coding	0.5	3.5	1.5	5.5	0.0	1.0
Merged-chr17-23717116-2	chr17	23716616	23717616	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9220.0	NM_023058	268930.0	Mm.182193	NM_023058	ENSMUSG00000023908	Pkmyt1	6230424P17|AW209059|Myt1	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	1.0	0.0	0.0	0.0	2.0	2.0
Merged-chr2-90676963-2	chr2	90676463	90677463	+	626.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021512)	promoter-TSS (NM_021512)	-252.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-37144168-1	chr11	37143668	37144668	+	626.0	f0_balb.idr	Intergenic	Intergenic	-199927.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.0	5.0	4.5	0.0	6.5	1.5
Merged-chr10-121402569-1	chr10	121402069	121403069	+	626.0	f1_c57bl6.idr	Intergenic	Intergenic	37479.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0.0	2.5	5.0	10.0	6.5	1.0
Merged-chr7-116335908-2	chr7	116335408	116336408	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1718.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	5.0	1.5	1.5	9.5	6.5	2.0
Merged-chr12-100085241-2	chr12	100084741	100085741	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD3|LINE|L1	-27090.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171762230-1	chr1	171761730	171762730	+	626.0	f0_balb.idr	Intergenic	Intergenic	-4902.0	NM_013730	27218.0	Mm.103648	NM_013730	ENSMUSG00000015316	Slamf1	4933415F16|AA177906|CD150|CDw150|ESTM51|IPO-3|Slam	signaling lymphocytic activation molecule family member 1	protein-coding	4.0	7.5	8.0	1.0	4.5	1.5
Merged-chr9-119425764-2	chr9	119425261	119426261	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007397, intron 1 of 9)	intron (NM_007397, intron 1 of 9)	-19199.0	NR_153320	208194.0	Mm.101578	NM_172456	ENSMUSG00000042787	Exog	AW557704|ENGL-B|ENGL-a|Endogl1|Endogl2|Engl|Engla|Englb	endo/exonuclease (5'-3'), endonuclease G-like	protein-coding	1.0	0.0	1.0	0.0	0.0	0.0
Merged-chr5-18834406-2	chr5	18833906	18834906	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	392149.0	NR_102341	70832.0	Mm.398993	NR_102341	ENSMUSG00000097626	4921504A21Rik	-	RIKEN cDNA 4921504A21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84625604-2	chr17	84625105	84626105	+	626.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172256)	promoter-TSS (NM_172256)	-894.0	NM_172256	213575.0	Mm.246119	NM_172256	ENSMUSG00000024253	Dync2li1	4933404O11Rik|CGI-60|D2lic|LIC3|mD2LIC	dynein cytoplasmic 2 light intermediate chain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-48413616-2	chr2	48413116	48414116	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-400493.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64057945-1	chr15	64057445	64058445	+	626.0	f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	1819.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	2.5	11.5	4.5	2.0	1.5	3.5
Merged-chr11-106735937-2	chr11	106735437	106736437	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-15289.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-62867789-1	chr14	62867289	62868289	+	626.0	f1_c57bl6.idr	intron (NM_175546, intron 1 of 11)	MLT1B|LTR|ERVL-MaLR	2247.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	43.5	85.5	57.0	42.5	92.0	63.0
Merged-chr14-77908277-2	chr14	77907777	77908777	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029495, intron 1 of 11)	MTD-int|LTR|ERVL-MaLR	4038.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149816796-2	chr4	149816296	149817296	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42529.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	1.5	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121658438-1	chr5	121657938	121658938	+	626.0	f1_c57bl6.idr	intron (NM_028037, intron 1 of 20)	intron (NM_028037, intron 1 of 20)	2072.0	NM_028037	71985.0	Mm.45423	NM_028037	ENSMUSG00000029456	Acad10	2410021P16Rik	acyl-Coenzyme A dehydrogenase family, member 10	protein-coding	2.0	0.0	0.0	0.5	0.0	0.0
Merged-chr15-99701183-2	chr15	99700683	99701683	+	626.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001289791)	TTS (NM_001289791)	-1104.0	NM_031842	83797.0	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	3.0	0.0	0.5	0.0	0.0	1.5
Merged-chr19-55938856-2	chr19	55938356	55939356	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43535.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30041678-2	chr5	30041178	30042178	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28564.0	NM_031168	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34861597-2	chr6	34861097	34862097	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4b|LINE|L1	-1549.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-163974840-2	chr1	163974340	163975340	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357049, intron 10 of 24)	intron (NM_001357049, intron 10 of 24)	19956.0	NM_001357049	381306.0	Mm.28152	NM_201364	ENSMUSG00000041406	BC055324	-	cDNA sequence BC055324	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109121387-2	chr4	109120887	109121887	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355190, intron 2 of 21)	intron (NM_001355190, intron 2 of 21)	-3351.0	NM_001134791	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9495802-1	chr18	9495302	9496302	+	626.0	f1_balb.idr	Intergenic	Intergenic	-45648.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	2.5	2.5	0.0	2.0	3.0	3.5
Merged-chr16-10994651-2	chr16	10994151	10995151	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1530.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120062548-2	chr4	120062048	120063048	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-98658.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-62754035-2	chr12	62753535	62754535	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66248.0	NR_131949	73309.0	Mm.276558	NR_131949		Spanxn4	1700047L15Rik	SPANX family, member N4	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-83053307-2	chr3	83052807	83053807	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2231.0	NM_016784	53317.0	Mm.286349	NM_016784	ENSMUSG00000027998	Plrg1	AA958940|C80566|Tango4	pleiotropic regulator 1	protein-coding	4.0	0.0	0.0	0.0	0.0	0.5
Merged-chr14-116631207-1	chr14	116630707	116631707	+	626.0	f1_balb.idr	Intergenic	Intergenic	-294090.0	NM_001079844	23888.0	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	1.0	0.0	0.5	0.0	0.0	0.5
Merged-chr1-186579623-2	chr1	186579123	186580123	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20942.0	NR_131158	320449.0	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-15264339-2	chr4	15263839	15264839	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1481.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115925293-2	chr6	115924793	115925793	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167763, intron 26 of 28)	intron (NM_001167763, intron 26 of 28)	-6634.0	NM_145383	212541.0	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8989921-1	chr19	8989421	8990421	+	626.0	f0_balb.idr	intron (NM_001039959, intron 1 of 5)	CpG	637.0	NM_001286518	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	2.0	0.0	1.0	2.0	0.0	0.0
Merged-chr6-5045526-2	chr6	5045026	5046026	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	B4A|SINE|B4	142206.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144170720-1	chr3	144170220	144171220	+	626.0	f0_balb.idr	Intergenic	ORR1B2-int|LTR|ERVL-MaLR	31612.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46517729-2	chr19	46517229	46518229	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16081.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	4.0	0.5	0.0	4.0	0.5	0.0
Merged-chr6-47812699-2	chr6	47812217	47813217	+	626.0	f0_balb.idr|f1_balb.idr	intron (NM_009787, intron 1 of 9)	intron (NM_009787, intron 1 of 9)	795.0	NM_009787	12304.0	Mm.2442	NM_009787	ENSMUSG00000025823	Pdia4	AI987846|Cai|ERp-72|Erp72	protein disulfide isomerase associated 4	protein-coding	54.0	113.5	102.0	68.0	52.0	67.5
Merged-chr9-113711005-1	chr9	113710505	113711505	+	626.0	f1_balb.idr	Intergenic	Intergenic	-2746.0	NM_011052	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	4.0	0.0	0.5	4.0	2.0	0.5
Merged-chr10-52421834-2	chr10	52421334	52422334	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030250, intron 1 of 4)	intron (NM_030250, intron 1 of 4)	4287.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62944922-2	chr10	62944422	62945422	+	626.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175194, exon 9 of 9)	3' UTR (NM_175194, exon 9 of 9)	-2107.0	NR_152862	327762.0	Mm.21492	NM_177372	ENSMUSG00000036875	Dna2	Dna2l|E130315B21Rik	DNA replication helicase/nuclease 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171378116-1	chr1	171377616	171378616	+	626.0	f0_balb.idr	intron (NM_001122680, intron 1 of 7)	L2c|LINE|L2	7943.0	NM_001122680	71740.0	Mm.263414	NM_027893	ENSMUSG00000006411	Nectin4	1200017F15Rik|Prr4|Pvrl4	nectin cell adhesion molecule 4	protein-coding	8.5	5.5	9.0	5.5	0.0	3.0
Merged-chr9-119945685-2	chr9	119945185	119946185	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028735, intron 8 of 28)	intron (NM_028735, intron 8 of 28)	8079.0	NM_028735	74052.0	Mm.189573	NM_028735	ENSMUSG00000032514	Ttc21a	4921538N17Rik|AA387572|Thm2	tetratricopeptide repeat domain 21A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-76361631-1	chr6	76361131	76362131	+	626.0	f1_balb.idr	Intergenic	Intergenic	-880846.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	6.5	2.5	1.0	0.0	2.0	1.5
Merged-chr13-23708034-2	chr13	23707534	23708534	+	626.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010424, exon 2 of 6)	exon (NM_010424, exon 2 of 6)	2820.0	NM_001347493	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	11.0	8.5	8.5	7.5	27.0	4.5
Merged-chr11-86292408-2	chr11	86291908	86292908	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_130959, intron 6 of 6)	intron (NR_130959, intron 6 of 6)	-34840.0	NM_027421	70422.0	Mm.171304	NM_027421	ENSMUSG00000018068	Ints2	2810417D08Rik|AA408260|AI987735|mKIAA1287	integrator complex subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167363823-2	chr2	167363323	167364323	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14645.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119549485-1	chr2	119548985	119549985	+	626.0	f1_balb.idr	intron (NM_019769, intron 1 of 6)	B1F|SINE|Alu	1778.0	NM_019769	56398.0	Mm.214765	NM_019769	ENSMUSG00000014077	Chp1	1500003O03Rik|AA960066|AI046351|Cahp|Chp|Sid470p|p24|vac	calcineurin-like EF hand protein 1	protein-coding	11.0	14.0	2.5	9.0	19.0	3.0
Merged-chr10-8746387-2	chr10	8745886	8746886	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 10 of 19)	intron (NM_175155, intron 10 of 19)	139684.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	2.0	1.5	7.5	2.5	9.0	6.5
Merged-chr15-73041042-2	chr15	73040542	73041542	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164643, intron 4 of 8)	intron (NM_001164643, intron 4 of 8)	14770.0	NM_029640	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119431563-2	chr11	119431063	119432063	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41091.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.0	11.5	4.5	0.0	0.0	3.5
Merged-chr14-71332568-2	chr14	71332068	71333068	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81295.0	NR_046076	100043132.0	Mm.399336	NR_046075	ENSMUSG00000115139	Gm4251	-	predicted gene 4251	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-104434992-1	chr5	104434492	104435492	+	626.0	f0_balb.idr	promoter-TSS (NM_001204202)	promoter-TSS (NM_001204202)	-119.0	NM_001204201	20750.0	Mm.288474	NM_009263	ENSMUSG00000029304	Spp1	2AR|Apl-1|BNSP|BSPI|Bsp|ETA-1|Eta|OP|Opn|Opnl|Ric|Spp-1	secreted phosphoprotein 1	protein-coding	0.0	0.0	0.0	0.5	1.0	0.5
Merged-chr13-87235393-1	chr13	87234893	87235893	+	626.0	f1_balb.idr	Intergenic	L1_Mus4|LINE|L1	-1188598.0	NM_007749	12867.0	Mm.378898	NM_007749	ENSMUSG00000017778	Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding	8.0	0.0	1.0	1.5	0.0	4.0
Merged-chr11-51587222-2	chr11	51586722	51587722	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028398, intron 3 of 12)	intron (NM_028398, intron 3 of 12)	2465.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-92812026-2	chr2	92811526	92812526	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103075.0	NM_030725	80976.0	Mm.33490	NM_030725	ENSMUSG00000027220	Syt13	5730409J20Rik|AI549909|mKIAA1427	synaptotagmin XIII	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46786177-1	chr11	46785677	46786677	+	626.0	f1_balb.idr	Intergenic	RMER1A|Other|Other	-24622.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	0.5	0.0	6.5	4.0	0.0	2.0
Merged-chr15-44310842-2	chr15	44310342	44311342	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	114707.0	NM_013696	22045.0	Mm.309350	NM_013696	ENSMUSG00000038760	Trhr	TRH-R1	thyrotropin releasing hormone receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47462888-2	chr19	47462428	47463428	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	1483.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0.0	3.0	1.5	0.0	6.5	1.0
Merged-chr5-73203032-1	chr5	73202532	73203532	+	626.0	f1_balb.idr	intron (NM_028194, intron 2 of 62)	Lx8|LINE|L1	53586.0	NM_028194	72313.0	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	2.0	0.0	2.5	2.0	0.5	6.0
Merged-chr16-75871810-2	chr16	75871310	75872310	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023380, intron 6 of 7)	intron (NM_023380, intron 6 of 7)	37456.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136826042-1	chr6	136825542	136826542	+	626.0	f1_c57bl6.idr	exon (NM_021714, exon 2 of 12)	exon (NM_021714, exon 2 of 12)	2174.0	NM_021714	60321.0	Mm.141197	NM_021714	ENSMUSG00000030216	Wbp11	2510026P17Rik|D6Wsu113e|Npwbp|SIPP1	WW domain binding protein 11	protein-coding	14.5	31.0	24.5	4.0	7.5	8.5
Merged-chr15-61211208-2	chr15	61210708	61211708	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-289938.0	NM_001081067	117586.0	Mm.291499	NM_001081067	ENSMUSG00000022347	A1bg	C44	alpha-1-B glycoprotein	protein-coding	0.0	2.0	1.0	0.0	0.0	0.0
Merged-chr8-125778056-3	chr8	125777537	125778537	+	626.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175561, intron 25 of 33)	RLTR26B_MM|LTR|ERVK	43834.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141728617-1	chr4	141728117	141729117	+	626.0	f1_balb.idr	Intergenic	B3|SINE|B2	-5198.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	22.0	15.0	4.0	17.0	16.5	3.5
Merged-chr19-8887971-2	chr19	8887471	8888471	+	626.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025463)	promoter-TSS (NM_025463)	799.0	NR_027866	67531.0	Mm.475113	NR_027866		5730408K05Rik	2610018C13Rik	RIKEN cDNA 5730408K05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75222365-2	chr18	75221865	75222865	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027727, intron 14 of 16)	intron (NM_027727, intron 14 of 16)	74952.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	4.5	0.5	6.0	7.5	7.0	4.0
Merged-chr16-84736889-2	chr16	84736389	84737389	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCC)n|Simple_repeat|Simple_repeat	-1587.0	NM_017404	27393.0	Mm.103655	NM_017404	ENSMUSG00000022889	Mrpl39	C21orf8|MRP-L5|ORF22|Rpml5	mitochondrial ribosomal protein L39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24689846-2	chr17	24689390	24690390	+	626.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011522)	promoter-TSS (NM_011522)	59.0	NM_011522	20974.0	Mm.26032	NM_011522	ENSMUSG00000007021	Syngr3	-	synaptogyrin 3	protein-coding	4.5	0.0	0.0	0.0	0.0	2.0
Merged-chr2-75708703-2	chr2	75708203	75709203	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-4040.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0.0	2.5	0.0	0.0	3.0	1.5
Merged-chr3-27200237-2	chr3	27199737	27200737	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	B4A|SINE|B4	17233.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112952920-2	chr5	112952420	112953420	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 9 of 20)	intron (NM_001285806, intron 9 of 20)	-56558.0	NM_028901	74376.0	Mm.441903	NM_028901	ENSMUSG00000072720	Myo18b	4932408L24Rik|4933411E19Rik|Gm448	myosin XVIIIb	protein-coding	6.5	3.5	7.5	9.5	14.0	9.0
Merged-chr10-79970885-2	chr10	79970385	79971385	+	626.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_130455, exon 1 of 9)	5' UTR (NM_130455, exon 1 of 9)	161.0	NM_130455	170483.0	Mm.391566	NM_130455	ENSMUSG00000035745	Grin3b	GluN3B|NR3B	glutamate receptor, ionotropic, NMDA3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119188476-2	chr4	119187984	119188984	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013848, intron 2 of 12)	intron (NM_013848, intron 2 of 12)	1527.0	NM_013848	27028.0	Mm.290753	NM_013848	ENSMUSG00000028644	Ermap	AA409279|AI666418	erythroblast membrane-associated protein	protein-coding	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24051273-1	chr5	24050773	24051773	+	626.0	f0_balb.idr	Intergenic	Intergenic	-20583.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	0.0	17.5	8.5	4.5	18.5	7.0
Merged-chr2-180182377-2	chr2	180181877	180182877	+	626.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081171, exon 58 of 79)	exon (NM_001081171, exon 58 of 79)	-2554.0	NR_105972	102466785.0		NR_105972	ENSMUSG00000098735	Mir7005	Gm27835|mmu-mir-7005	microRNA 7005	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-138033531-2	chr2	138033031	138034031	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-223053.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96879215-2	chr11	96878719	96879719	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28826.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	46.5	125.0	82.0	7.0	21.0	19.0
Merged-chr15-59600273-1	chr15	59599773	59600773	+	626.0	f1_balb.idr	intron (NM_026746, intron 6 of 6)	intron (NM_026746, intron 6 of 6)	-48381.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	5.0	6.5	6.5	1.0	0.0	1.5
Merged-chr12-41295962-1	chr12	41295462	41296462	+	626.0	f0_balb.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	190095.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-72355122-2	chr11	72354622	72355622	+	625.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282006, intron 4 of 7)	intron (NM_001282006, intron 4 of 7)	6174.0	NM_001282007	21689.0	Mm.42257	NM_011569	ENSMUSG00000020799	Tekt1	MT14	tektin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-97116166-3	chr9	97115666	97116666	+	625.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5125.0	NM_138756	192287.0	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120579093-2	chr2	120578571	120579571	+	625.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_009222, intron 1 of 7)	intron (NM_009222, intron 1 of 7)	11400.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	39.0	124.5	79.5	52.5	97.0	91.0
Merged-chr3-136087218-2	chr3	136086718	136087718	+	625.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 10 of 16)	intron (NM_001033350, intron 10 of 16)	238848.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38702375-2	chr16	38701875	38702875	+	625.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	10660.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29403450-2	chr17	29402949	29403949	+	625.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42535.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0.5	2.0	0.0	0.5	4.5	2.5
Merged-chr10-10532742-2	chr10	10532242	10533242	+	625.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER67C|LTR|ERV1	25465.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77214931-3	chr11	77214426	77215426	+	625.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1499.0	NM_177710	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113629862-2	chr6	113629362	113630362	+	625.833313	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009507, exon 3 of 3)	3' UTR (NM_009507, exon 3 of 3)	5841.0	NM_009507	22346.0	Mm.29407	NM_009507	ENSMUSG00000033933	Vhl	Vhlh	von Hippel-Lindau tumor suppressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167640333-2	chr2	167639833	167640833	+	625.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-8328.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-17742395-2	chr2	17741895	17742895	+	625.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11327.0	NM_028757	74103.0	Mm.120298	NM_028757	ENSMUSG00000053702	Nebl	1200007O21Rik|A630080F05Rik|BB140644|D830029A09Rik|Lnebl	nebulette	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-96902921-4	chr5	96902407	96903407	+	625.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-18365.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	0.0	1.0	2.0	1.5	6.0	0.0
Merged-chr7-28741058-2	chr7	28740558	28741558	+	625.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023637)	promoter-TSS (NM_023637)	-237.0	NM_001360254	24030.0	Mm.358650	NM_011885	ENSMUSG00000045948	Mrps12	AI327385|Rpms12|rps12	mitochondrial ribosomal protein S12	protein-coding	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr5-110968824-4	chr5	110968326	110969326	+	625.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 2 of 22)	MTC|LTR|ERVL-MaLR	-35318.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	0.0	0.0	1.0	1.5	1.0	0.5
Merged-chr19-47253319-2	chr19	47252844	47253844	+	625.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_021360, exon 4 of 6)	exon (NM_021360, exon 4 of 6)	20245.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115163650-2	chr5	115163120	115164120	+	625.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5444.0	NM_175403	109154.0	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-58732464-3	chr2	58731933	58732933	+	625.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289660, intron 1 of 7)	intron (NM_001289660, intron 1 of 7)	-22751.0	NM_001289659	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97397922-3	chr6	97397395	97398395	+	625.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 5 of 23)	URR1A|DNA|hAT-Charlie	61391.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78493696-3	chr10	78493199	78494199	+	625.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28751.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21225402-3	chr9	21224846	21225846	+	625.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13986.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-83635438-2	chr10	83634938	83635938	+	625.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145220, intron 2 of 20)	RMER20C_Mm|LTR|ERVK	13226.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-136986801-2	chr2	136986301	136987301	+	625.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_149746, intron 4 of 8)	intron (NR_149746, intron 4 of 8)	87450.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-74794335-2	chr5	74793832	74794832	+	625.666626	f0_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-91429.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	0.0	0.5	4.5	0.0	0.5	1.5
Merged-chr11-5059981-3	chr11	5059480	5060480	+	625.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001190408)	TTS (NM_001190408)	1852.0	NM_145216	75668.0	Mm.374836	NM_145216	ENSMUSG00000034209	Rasl10a	2210403B10Rik|AI852688	RAS-like, family 10, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94706812-2	chr11	94706312	94707312	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2313.0	NM_001007584	432589.0	Mm.342314	NM_001007584	ENSMUSG00000056008	Gm11541	-	predicted gene 11541	protein-coding	0.0	0.0	0.0	0.0	3.5	0.0
Merged-chr7-135721777-2	chr7	135721277	135722277	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR52|LTR|ERVL	-5398.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8518660-2	chr12	8518132	8519132	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18623.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	24.5	26.0	22.0	8.0	26.5	16.5
Merged-chr4-63498472-2	chr4	63497972	63498972	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2481.0	NM_001008791	73750.0	Mm.300397	NM_028640	ENSMUSG00000039137	Whrn	1110035G07Rik|AW122018|AW742671|C430046P22Rik|Dfnb31|Ush2d|wi	whirlin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-35892431-2	chr1	35891931	35892931	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-175969.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144105730-2	chr2	144105230	144106230	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72628.0	NM_207275	403171.0	Mm.389362	NM_207275	ENSMUSG00000037307	Banf2	4930517K23Rik|Baf-L|Baf-like|Gm115	barrier to autointegration factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116612658-2	chr11	116612158	116613158	+	625.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	MIRb|SINE|MIR	11594.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122833117-2	chr5	122832617	122833617	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-11775.0	NM_001289519	59008.0	Mm.332667	NM_021505	ENSMUSG00000029472	Anapc5	2510006G12Rik|AA408751|AA536819|AA986414|APC5|Anpc5	anaphase-promoting complex subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107384394-2	chr11	107383894	107384894	+	625.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	86326.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-14843121-2	chr9	14842621	14843621	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	-17089.0	NM_001310734	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102897607-1	chr2	102897107	102898107	+	625.5	f0_balb.idr	intron (NM_001039150, intron 1 of 13)	Lx5|LINE|L1	4058.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	26.0	52.0	12.0	11.0	30.0	22.5
Merged-chr10-30656634-2	chr10	30656134	30657134	+	625.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111267)	promoter-TSS (NM_001111267)	-767.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77983596-2	chr10	77983096	77984096	+	625.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026431, intron 6 of 6)	intron (NM_026431, intron 6 of 6)	4946.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17667864-2	chr6	17667364	17668364	+	625.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007604)	TTS (NM_007604)	-26130.0	NM_001289626	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	8.0	2.5	6.0	7.0	0.0	4.5
Merged-chr10-34022027-2	chr10	34021527	34022527	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17D2|LTR|ERVK	-2411.0	NM_025614	66521.0	Mm.28528	NM_025614	ENSMUSG00000019782	Rwdd1	0710001K08Rik|2610002D06Rik|2700069A07Rik|IH1	RWD domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129502847-1	chr2	129502347	129503347	+	625.5	f0_balb.idr	intron (NM_177653, intron 1 of 6)	RLTR18-int|LTR|ERVK	33755.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	21.5	32.0	52.0	27.5	20.5	15.0
Merged-chr7-141911497-1	chr7	141910997	141911997	+	625.5	f0_balb.idr	Intergenic	Intergenic	-9036.0	NM_001347562	54473.0	Mm.103551	NM_023764	ENSMUSG00000025139	Tollip	4930403G24Rik|4931428G15Rik	toll interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117129327-2	chr4	117128832	117129832	+	625.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175030)	TTS (NM_175030)	2519.0	NM_175030	242646.0	Mm.358914	NM_175030	ENSMUSG00000047671	Tctex1d4	4833401D15Rik	Tctex1 domain containing 4	protein-coding	4.5	1.0	1.0	8.5	0.0	1.0
Merged-chr18-62188165-2	chr18	62187665	62188665	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8065.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-89111031-2	chr18	89110531	89111531	+	625.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175542, intron 43 of 48)	intron (NM_175542, intron 43 of 48)	-86396.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27448648-2	chr3	27448148	27449148	+	625.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 23 of 26)	intron (NM_001356953, intron 23 of 26)	77297.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27665287-2	chr3	27664787	27665787	+	625.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173182, intron 1 of 25)	intron (NM_173182, intron 1 of 25)	45165.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59699235-2	chr15	59698735	59699735	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50581.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73236292-2	chr14	73235792	73236792	+	625.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 17 of 26)	intron (NM_009029, intron 17 of 26)	-1599.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64594421-2	chr17	64593921	64594921	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7228.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-15934885-2	chr5	15934385	15935385	+	625.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001110844, exon 1 of 39)	5' UTR (NM_001110844, exon 1 of 39)	194.0	NM_001110844	12293.0	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152478881-2	chr4	152478381	152479381	+	625.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153424, intron 1 of 29)	intron (NM_153424, intron 1 of 29)	739.0	NM_153424	260305.0	Mm.302496	NM_153424	ENSMUSG00000039577	Nphp4	4930564O18Rik|nmf192	nephronophthisis 4 (juvenile) homolog (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-55871288-2	chr7	55870788	55871788	+	625.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164661, intron 2 of 31)	intron (NM_001164661, intron 2 of 31)	29217.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95980627-2	chr15	95980127	95981127	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	98926.0	NR_126493	402773.0	Mm.210567	NM_001033483	ENSMUSG00000078925	D030018L15Rik	-	nuclear receptor coactivator 2 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-150120715-2	chr5	150120215	150121215	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102040.0	NM_001289566	140498.0	Mm.444643	NM_080468	ENSMUSG00000053368	Rxfp2	Gpr106|Great|Lgr8	relaxin/insulin-like family peptide receptor 2	protein-coding	1.0	5.0	0.0	2.5	3.0	0.0
Merged-chr11-78388821-1	chr11	78388321	78389321	+	625.5	f0_balb.idr	Intergenic	Intergenic	-2213.0	NM_001277290	15218.0	Mm.4496	NM_008238	ENSMUSG00000002057	Foxn1	D11Bhm185e|Fkh19|HFH-11|Hfh11|Whn|nu|nude	forkhead box N1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33686358-2	chr17	33685858	33686858	+	625.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029804)	promoter-TSS (NM_029804)	-900.0	NM_029804	76936.0	Mm.311439	NM_029804	ENSMUSG00000059208	Hnrnpm	2610023M21Rik|AA409009|Hnrpm|mKIAA4193	heterogeneous nuclear ribonucleoprotein M	protein-coding	1.0	10.5	12.0	20.5	11.5	14.0
Merged-chr5-100633950-2	chr5	100633450	100634450	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	40306.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80197987-2	chr18	80197487	80198487	+	625.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199197, intron 1 of 5)	B3|SINE|B2	2632.0	NM_199197	68731.0	Mm.186936	NM_199197	ENSMUSG00000024570	Rbfa	1110032A13Rik|AI595940	ribosome binding factor A	protein-coding	2.0	1.0	5.5	0.0	6.0	5.0
Merged-chr1-74716600-2	chr1	74716100	74717100	+	625.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024264, intron 1 of 8)	ORR1F-int|LTR|ERVL-MaLR	3065.0	NM_024264	104086.0	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167708404-2	chr2	167707904	167708904	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	17227.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26552105-2	chr2	26551605	26552605	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28951.0	NM_178444	353156.0	Mm.268933	NM_178444	ENSMUSG00000026921	Egfl7	VE-statin|Zneu1	EGF-like domain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99840145-2	chr15	99839645	99840645	+	625.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113545, intron 2 of 10)	MLT1G3|LTR|ERVL-MaLR	-19996.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89424451-2	chr6	89423951	89424951	+	625.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 4 of 6)	intron (NM_001167736, intron 4 of 6)	-61838.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120025766-2	chr2	120025266	120026266	+	625.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011941, exon 30 of 30)	3' UTR (NM_011941, exon 30 of 30)	-1717.0	NR_104353	102238433.0	Mm.41467	NR_104353	ENSMUSG00000033852	Gm28042	Jmjd7-pla2g4b	predicted gene, 28042	ncRNA	0.0	4.0	5.0	6.0	0.0	4.0
Merged-chr18-62984845-2	chr18	62984345	62985345	+	625.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028017, intron 5 of 11)	B4|SINE|B4	6929.0	NM_028017	108123.0	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94922984-2	chr10	94922484	94923484	+	625.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 1 of 30)	intron (NM_018797, intron 1 of 30)	21594.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24173998-2	chr17	24173498	24174498	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-4320.0	NM_001361531	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	0.0	4.0	4.5	0.0	0.0	4.5
Merged-chr8-105474909-2	chr8	105474409	105475409	+	625.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357252, intron 7 of 10)	intron (NM_001357252, intron 7 of 10)	-3487.0	NM_026481	67971.0	Mm.29358	NM_026481	ENSMUSG00000014846	Tppp3	2700055K07Rik|CGI-38|Ceacam9|mmCGM8	tubulin polymerization-promoting protein family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-38308834-2	chr5	38308334	38309334	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10675.0	NM_013503	13492.0	Mm.167154	NM_013503	ENSMUSG00000039358	Drd5	D5R|Drd-5|Drd1b|Gpcr1	dopamine receptor D5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30571891-2	chr2	30571391	30572391	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-23153.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25209681-2	chr12	25209167	25210167	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80493.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.0	1.0	4.5	0.0	0.0	0.0
Merged-chr15-87116921-3	chr15	87116424	87117424	+	625.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-427375.0	NM_001252310	106014.0	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	10.5	8.5	6.5	9.0	6.0	2.0
Merged-chr14-26530533-3	chr14	26530025	26531025	+	625.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 1 of 22)	intron (NM_001310445, intron 1 of 22)	4099.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84069919-4	chr8	84069406	84070406	+	625.366638	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009055, intron 1 of 20)	intron (NM_009055, intron 1 of 20)	3070.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	51.0	70.5	71.0	42.0	123.5	108.5
Merged-chr18-68057746-2	chr18	68057246	68058246	+	625.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	124573.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	2.5	4.0	1.0	0.0	8.0	2.0
Merged-chr6-34156245-2	chr6	34155745	34156745	+	625.333374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021435, exon 10 of 10)	3' UTR (NM_021435, exon 10 of 10)	20809.0	NM_021435	58246.0	Mm.245527	NM_021435	ENSMUSG00000018999	Slc35b4	4930474D06Rik|AB041549|AW494345	solute carrier family 35, member B4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88741573-2	chr4	88741073	88742073	+	625.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13295.0	NM_001085528	435791.0	Mm.473673	NM_001085528	ENSMUSG00000094618	Gm13271	Ifnz	predicted gene 13271	protein-coding	0.5	0.0	1.0	0.5	5.0	0.5
Merged-chr19-29237245-3	chr19	29236747	29237747	+	625.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14556.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8950668-3	chr3	8950167	8951167	+	625.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 2 of 5)	RMER15|LTR|ERVL	13479.0	NM_001025262	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128764248-3	chr2	128763747	128764747	+	625.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 8 of 18)	intron (NM_008587, intron 8 of 18)	-54056.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	13.5	17.5	6.0	11.5	22.5	9.5
Merged-chr10-45045496-3	chr10	45045008	45046008	+	625.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21706.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153790852-1	chr1	153790352	153791352	+	625.333313	f0_balb.idr	intron (NM_001243223, intron 17 of 20)	intron (NM_001243223, intron 17 of 20)	41426.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127341991-2	chr10	127341491	127342491	+	625.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010296)	promoter-TSS (NM_010296)	-412.0	NM_010296	14632.0	Mm.391450	NM_010296	ENSMUSG00000025407	Gli1	AV235269|Zfp-5|Zfp5	GLI-Kruppel family member GLI1	protein-coding	3.5	3.0	1.5	3.5	1.0	1.0
Merged-chr2-132236101-2	chr2	132235601	132236601	+	625.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11687.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167801113-2	chr2	167800613	167801613	+	625.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109936.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52643125-2	chr13	52642625	52643625	+	625.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001198977, exon 13 of 14)	exon (NM_001198977, exon 13 of 14)	46243.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126758872-2	chr8	126758372	126759372	+	625.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90148.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25831456-2	chr17	25830956	25831956	+	625.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037243)	promoter-TSS (NR_037243)	-28.0	NR_037243	100526479.0		NR_037243	ENSMUSG00000093076	Mir3082	mir-3082|mmu-mir-3082	microRNA 3082	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70458342-3	chr11	70457913	70458913	+	625.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151499, intron 3 of 5)	B2_Mm2|SINE|B2	-1020.0	NM_001348337	574428.0	Mm.425692	NM_001029929	ENSMUSG00000040829	Zmynd15	-	zinc finger, MYND-type containing 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36282126-3	chr18	36281680	36282680	+	625.211121	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008989, intron 1 of 1)	intron (NM_008989, intron 1 of 1)	1018.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41662876-3	chr13	41662377	41663377	+	625.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56661.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24750246-2	chr16	24749746	24750746	+	625.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145954, intron 2 of 7)	intron (NM_001145954, intron 2 of 7)	28391.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-32617002-2	chr3	32616502	32617502	+	625.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013531)	promoter-TSS (NM_013531)	-412.0	NM_013531	14696.0	Mm.139192	NM_013531	ENSMUSG00000027669	Gnb4	6720453A21Rik|G(beta)4	guanine nucleotide binding protein (G protein), beta 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-10899023-2	chr8	10898523	10899523	+	625.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102285)	promoter-TSS (NR_102285)	-899.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-112374398-2	chr6	112373898	112374898	+	625.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356365, intron 11 of 11)	intron (NM_001356365, intron 11 of 11)	13625.0	NM_001356365	243612.0	Mm.122653	NM_175525	ENSMUSG00000034387	Ssu2	D630042P16Rik|Fls485|Ssuh2	ssu-2 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98402785-3	chr10	98402287	98403287	+	625.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50920.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70300957-3	chr8	70300408	70301408	+	625.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024922, intron 2 of 12)	B1_Mus2|SINE|Alu	1544.0	NM_001024922	234374.0	Mm.388127	NM_001024922	ENSMUSG00000057788	Ddx49	R27090_2	DEAD (Asp-Glu-Ala-Asp) box polypeptide 49	protein-coding	6.0	2.0	0.0	0.0	2.0	5.0
Merged-chr11-75138667-2	chr11	75138167	75139167	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 13 of 18)	intron (NM_001002764, intron 13 of 18)	29485.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61446919-2	chr18	61446419	61447419	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37688.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110381155-2	chr9	110380655	110381655	+	625.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001103162, exon 17 of 23)	exon (NM_001103162, exon 17 of 23)	27055.0	NM_001081043	104831.0	Mm.335477	NM_001081043	ENSMUSG00000036057	Ptpn23	AI462446|PTP-TD14	protein tyrosine phosphatase, non-receptor type 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25273181-2	chr2	25272681	25273681	+	625.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023464)	promoter-TSS (NM_023464)	715.0	NM_175300	99152.0	Mm.291624	NM_175300	ENSMUSG00000026965	Anapc2	9230107K09Rik|AL024279|Apc2|Emi4|Imi4|mKIAA1406	anaphase promoting complex subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-9703244-2	chr1	9702820	9703820	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-3111.0	NM_008651	17864.0	Mm.479	NM_008651	ENSMUSG00000025912	Mybl1	A-myb|G1-419-6|repro9	myeloblastosis oncogene-like 1	protein-coding	2.0	2.0	1.0	3.5	2.0	1.0
Merged-chr19-45042043-2	chr19	45041543	45042543	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195265, intron 1 of 15)	B1_Mur2|SINE|Alu	3729.0	NM_001195265	100503041.0	Mm.329877	NM_177605	ENSMUSG00000074818	Pdzd7	9130207N01|EG435601|Pdzk7	PDZ domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83745613-2	chr11	83745113	83746113	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1327.0	NM_183249	66107.0	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58745760-2	chr1	58745260	58746260	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 7 of 8)	intron (NM_001355056, intron 7 of 8)	15208.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	3.0	13.5	5.0	2.5	11.0	7.0
Merged-chr2-60894002-2	chr2	60893502	60894502	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-12564.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-33794319-1	chr18	33793819	33794819	+	625.0	f1_c57bl6.idr	promoter-TSS (NR_038151)	promoter-TSS (NR_038151)	-573.0	NR_038152	69749.0	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	16.5	4.0	9.0	11.0	10.5	3.5
Merged-chr17-35280324-1	chr17	35279824	35280824	+	625.0	f1_c57bl6.idr	Intergenic	Intergenic	17201.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	0.0	0.5	2.0	0.0	0.0	2.5
Merged-chr17-79052643-2	chr17	79052143	79053143	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316729, intron 1 of 5)	CpG	737.0	NM_001316729	70536.0	Mm.293870	NM_027455	ENSMUSG00000024084	Qpct	5730422A13Rik	glutaminyl-peptide cyclotransferase (glutaminyl cyclase)	protein-coding	1.0	1.0	0.5	2.0	1.0	0.0
Merged-chr4-58546829-1	chr4	58546329	58547329	+	625.0	f0_c57.idr	intron (NM_010336, intron 1 of 3)	intron (NM_010336, intron 1 of 3)	6464.0	NM_172989	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0.0	5.5	4.0	4.0	13.0	8.0
Merged-chr8-61602301-1	chr8	61601801	61602801	+	625.0	f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	MIRc|SINE|MIR	-11132.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.0	2.5	3.0	6.0	0.0	1.5
Merged-chr9-90226043-1	chr9	90225543	90226543	+	625.0	f0_c57.idr	exon (NM_194334, exon 6 of 13)	exon (NM_194334, exon 6 of 13)	44726.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71736538-2	chr6	71736038	71737038	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178608, intron 1 of 6)	B1F1|SINE|Alu	28857.0	NM_178608	52250.0	Mm.146332	NM_178608	ENSMUSG00000052852	Reep1	D6Ertd253e	receptor accessory protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34152093-1	chr10	34151593	34152593	+	625.0	f0_balb.idr	3' UTR (NM_172508, exon 6 of 6)	3' UTR (NM_172508, exon 6 of 6)	-24121.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117142145-2	chr10	117141645	117142645	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177798, intron 1 of 9)	intron (NM_177798, intron 1 of 9)	6329.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104241397-2	chr8	104240897	104241897	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045642, intron 3 of 8)	intron (NR_045642, intron 3 of 8)	7161.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150091336-2	chr4	150090836	150091836	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177366, intron 1 of 3)	intron (NM_177366, intron 1 of 3)	3833.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5139827-1	chr19	5139327	5140327	+	625.0	f1_balb.idr	intron (NM_153129, intron 19 of 23)	intron (NM_153129, intron 19 of 23)	-21419.0	NM_008451	16594.0	Mm.271648	NM_008451	ENSMUSG00000024862	Klc2	8030455F02Rik|AW212649|KLC 2|KLC-2	kinesin light chain 2	protein-coding	1.5	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73450850-2	chr2	73450350	73451350	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	3039.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54192177-1	chr12	54191677	54192677	+	625.0	f0_balb.idr	intron (NM_028133, intron 1 of 4)	intron (NM_028133, intron 1 of 4)	11697.0	NM_028133	112407.0	Mm.133037	NM_028133	ENSMUSG00000035105	Egln3	2610021G09Rik|AI505553|AI648162|Hif-p4h-3|Phd3|SM-20	egl-9 family hypoxia-inducible factor 3	protein-coding	1.0	0.0	3.0	0.0	0.0	2.5
Merged-chr14-47165306-1	chr14	47164806	47165806	+	625.0	f0_balb.idr	intron (NM_008102, intron 3 of 5)	intron (NM_008102, intron 3 of 5)	24107.0	NM_008102	14528.0	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTP-CH-I|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	9.0	0.5	3.0	2.0	2.0	0.5
Merged-chr11-119477794-1	chr11	119477294	119478294	+	625.0	f1_c57bl6.idr	intron (NR_153849, intron 2 of 3)	intron (NR_153849, intron 2 of 3)	13441.0	NR_153849	78439.0	Mm.440446	NR_153849	ENSMUSG00000109408	A930037H05Rik	Gm44935	RIKEN cDNA A930037H05 gene	ncRNA	2.0	12.0	2.0	14.0	6.5	2.0
Merged-chr4-133180405-2	chr4	133179901	133180901	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 2 of 8)	intron (NM_153423, intron 2 of 8)	-15254.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	29.0	56.5	45.0	38.0	61.5	31.5
Merged-chr8-111659854-2	chr8	111659354	111660354	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011742, intron 2 of 3)	MERVL_2A-int|LTR|ERVL	16411.0	NM_011742	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	1.5	0.0	0.0	0.0	0.0	12.5
Merged-chr5-75028414-1	chr5	75027914	75028914	+	625.0	f0_balb.idr	intron (NM_028850, intron 1 of 5)	intron (NM_028850, intron 1 of 5)	16227.0	NM_028850	74277.0	Mm.239814	NM_028850	ENSMUSG00000029229	Chic2	1700081B18Rik|4930502K01Rik|BTL	cysteine-rich hydrophobic domain 2	protein-coding	1.0	2.0	0.0	1.0	2.0	0.0
Merged-chr3-16466570-2	chr3	16466070	16467070	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	283405.0	NM_172677	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	1.5	8.0	0.5	2.5	8.0	0.5
Merged-chr11-39149861-2	chr11	39149305	39150305	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	240420.0	NR_126439	75315.0	Mm.461295	NR_126439		4930553C11Rik	-	RIKEN cDNA 4930553C11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83787868-2	chr17	83787368	83788368	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 11 of 16)	B2_Mm1t|SINE|B2	58922.0	NM_025325	107766.0	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105958378-2	chr8	105957878	105958878	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045594, intron 3 of 23)	intron (NR_045594, intron 3 of 23)	-6679.0	NR_106042	102465651.0		NR_106042	ENSMUSG00000099131	Mir7074	Gm27603|mmu-mir-7074	microRNA 7074	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44996858-1	chr7	44996358	44997358	+	625.0	f1_balb.idr	promoter-TSS (NM_016849)	promoter-TSS (NM_016849)	721.0	NM_029410	75736.0	Mm.261006	NM_029410	ENSMUSG00000003190	Bcl2l12	2810475P17Rik|5430429M05Rik|Bcl-L12|Bcl2-L12	BCL2-like 12 (proline rich)	protein-coding	35.0	21.5	22.5	14.5	65.0	16.5
Merged-chr2-180249678-2	chr2	180249178	180250178	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7701.0	NM_025587	66481.0	Mm.289669	NM_025587	ENSMUSG00000039001	Rps21	1810049N11Rik|2410030A14Rik	ribosomal protein S21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5777951-2	chr13	5777451	5778451	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A1|DNA|hAT-Charlie	80141.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54402809-2	chr12	54402309	54403309	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11491.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-59474414-2	chr17	59473914	59474914	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-461092.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-20947573-2	chr17	20947073	20948073	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016891, intron 1 of 14)	intron (NM_016891, intron 1 of 14)	2119.0	NM_016891	51792.0	Mm.294138	NM_016891	ENSMUSG00000007564	Ppp2r1a	6330556D22Rik|PP2A|PR65	protein phosphatase 2, regulatory subunit A, alpha	protein-coding	0.0	1.0	2.5	0.0	0.0	0.0
Merged-chr11-70500418-1	chr11	70499918	70500918	+	625.0	f0_balb.idr	Intergenic	Intergenic	-4856.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149726083-2	chr4	149725583	149726583	+	625.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177672, exon 6 of 6)	3' UTR (NM_177672, exon 6 of 6)	11687.0	NM_001284273	230917.0	Mm.266704	NM_177672	ENSMUSG00000044700	Tmem201	AV028368|D4Ertd429e|Net5|Samp1	transmembrane protein 201	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20070786-2	chr14	20070286	20071286	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12386.0	NM_026209	67509.0	Mm.292423	NM_026209	ENSMUSG00000045107	Saysd1	1810063B07Rik|4930488P03Rik	SAYSVFN motif domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138085647-2	chr5	138085147	138086147	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029869, intron 1 of 3)	intron (NM_029869, intron 1 of 3)	563.0	NM_029869	74570.0	Mm.213114	NM_029869	ENSMUSG00000029729	Zkscan1	5930429A01Rik|9130423L19Rik|9230118B16Rik|AI646829|AI788588|C87323|KOX18|PHZ-37|ZNF139	zinc finger with KRAB and SCAN domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100668160-1	chr15	100667660	100668660	+	625.0	f1_c57bl6.idr	intron (NM_001270537, intron 1 of 10)	intron (NM_001270537, intron 1 of 10)	1340.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	19.0	50.0	47.5	20.5	72.0	38.0
Merged-chr11-69632028-2	chr11	69631528	69632528	+	625.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011814)	promoter-TSS (NM_011814)	-943.0	NM_011814	23879.0	Mm.41930	NM_011814	ENSMUSG00000018765	Fxr2	Fxr2h	fragile X mental retardation, autosomal homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136988995-1	chr5	136988495	136989495	+	625.0	f1_balb.idr	exon (NM_011962, exon 5 of 19)	exon (NM_011962, exon 5 of 19)	-1036.0	NM_027318	70103.0	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	5.0	9.5	16.5	8.0	15.0	25.0
Merged-chr5-86170821-2	chr5	86170321	86171321	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172712, intron 1 of 32)	MTB|LTR|ERVL-MaLR	1922.0	NM_172712	231380.0	Mm.34012	NM_172712	ENSMUSG00000035898	Uba6	4930542H01|5730469D23Rik|AU021846|AW124799|E1-L2|Ube1l2	ubiquitin-like modifier activating enzyme 6	protein-coding	1.0	2.5	4.5	2.0	1.0	1.5
Merged-chr9-13493079-3	chr9	13492591	13493591	+	625.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61730.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	0.0	0.0	0.0	0.5	0.0	2.5
Merged-chr7-126772881-1	chr7	126772381	126773381	+	625.0	f0_balb.idr	intron (NM_024228, intron 9 of 9)	intron (NM_024228, intron 9 of 9)	-4094.0	NM_026875	66090.0	Mm.27114	NM_025347	ENSMUSG00000042675	Ypel3	0610043B10Rik|1190001G19Rik|Suap	yippee like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-142101108-1	chr4	142100608	142101608	+	625.0	f1_balb.idr	Intergenic	URR1B|DNA|hAT-Charlie	-16804.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	0.0	0.5	0.0	6.5	0.0	0.0
Merged-chr2-180259439-2	chr2	180258939	180259939	+	625.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025587)	TTS (NM_025587)	1903.0	NR_037274	100526556.0		NR_037274	ENSMUSG00000092827	Mir3091	mir-3091|mmu-mir-3091	microRNA 3091	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-85957043-1	chr10	85956543	85957543	+	625.0	f0_balb.idr	intron (NM_145422, intron 1 of 11)	intron (NM_145422, intron 1 of 11)	750.0	NM_145422	28088.0	Mm.9257	NM_145422	ENSMUSG00000001783	Rtcb	AI255213|AI463255|D10Wsu52e|FAAP|HSPC117	RNA 2',3'-cyclic phosphate and 5'-OH ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-137831965-2	chr6	137831465	137832465	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172733, intron 7 of 8)	intron (NM_172733, intron 7 of 8)	77388.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63752779-2	chr4	63752279	63753279	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7666.0	NM_177371	326623.0	Mm.208152	NM_177371	ENSMUSG00000050395	Tnfsf15	Tl1|Tl1a|Tnlg1b|Vegi	tumor necrosis factor (ligand) superfamily, member 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96680485-1	chr9	96679985	96680985	+	625.0	f1_balb.idr	Intergenic	RSINE1|SINE|B4	38960.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	1.0	0.5	0.0	0.0	0.5	1.0
Merged-chr11-69627484-2	chr11	69626984	69627984	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	5432.0	NM_001356468	69215.0	Mm.340410	NM_026991	ENSMUSG00000069835	Sat2	2610016A03Rik|SSAT-2|SSAT2	spermidine/spermine N1-acetyl transferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59234908-2	chr4	59234408	59235408	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25143.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83542673-2	chr11	83542173	83543173	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12155.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128620495-2	chr2	128619995	128620995	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008569, intron 43 of 47)	intron (NM_008569, intron 43 of 47)	28154.0	NM_001310641	241634.0	Mm.297682	NM_001310641	ENSMUSG00000074812	Spdye4c	Gm355|SpeedyB3|SpyB3	speedy/RINGO cell cycle regulator family, member E4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-23132895-2	chr19	23132395	23133395	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-8331.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86433351-2	chr1	86432851	86433851	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	7022.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109875986-3	chr11	109875483	109876483	+	625.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30105.0	NR_045909	73257.0	Mm.250442	NR_045909	ENSMUSG00000087393	1700023C21Rik	-	RIKEN cDNA 1700023C21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-83339614-2	chr4	83339114	83340114	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-15425.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0.0	5.5	2.0	5.0	9.0	2.0
Merged-chr2-38646177-1	chr2	38645677	38646677	+	625.0	f0_balb.idr	Intergenic	Intergenic	-2271.0	NM_011187	19177.0	Mm.389251	NM_011187	ENSMUSG00000026750	Psmb7	AU020723|MC14	proteasome (prosome, macropain) subunit, beta type 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149658204-2	chr4	149657704	149658704	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029837, intron 8 of 23)	intron (NM_001029837, intron 8 of 23)	-2637.0	NR_105990	102465983.0		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	8.0	0.0	1.0	0.0	5.0	1.5
Merged-chr8-70486519-1	chr8	70486019	70487019	+	625.0	f1_c57bl6.idr	intron (NM_182991, intron 1 of 7)	intron (NM_182991, intron 1 of 7)	839.0	NM_182991	67937.0	Mm.23002	NM_182991	ENSMUSG00000035964	Tmem59l	5330410G16Rik	transmembrane protein 59-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118093454-2	chr10	118092988	118093988	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48299.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	28.0	14.5	19.5	13.5	15.5	11.5
Merged-chr7-97357578-1	chr7	97357078	97358078	+	625.0	f1_balb.idr	Intergenic	Intergenic	-14039.0	NM_199035	381903.0	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	56.5	46.0	52.5	35.0	81.0	66.0
Merged-chr7-16284321-2	chr7	16283821	16284821	+	625.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001136471, exon 3 of 14)	exon (NM_001136471, exon 3 of 14)	338.0	NM_172297	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73130732-2	chr14	73130232	73131232	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-11778.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-115058466-1	chr4	115057966	115058966	+	625.0	f1_balb.idr	intron (NM_001287388, intron 1 of 4)	intron (NM_001287388, intron 1 of 4)	655.0	NM_001287388	21349.0	Mm.239869	NM_011527	ENSMUSG00000028717	Tal1	Hpt|SCL/tal-1|Scl|bHLHa17|tal-1	T cell acute lymphocytic leukemia 1	protein-coding	0.0	0.0	1.0	0.0	1.0	0.0
Merged-chr5-86887843-1	chr5	86887343	86888343	+	625.0	f0_balb.idr	Intergenic	L1_Mur3|LINE|L1	19094.0	NM_153598	100727.0	Mm.281844	NM_153598	ENSMUSG00000029260	Ugt2b34	AI788959	UDP glucuronosyltransferase 2 family, polypeptide B34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126577002-2	chr8	126576502	126577502	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16434.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4633389-2	chr16	4632889	4633889	+	625.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_030205, exon 16 of 28)	exon (NM_030205, exon 16 of 28)	-6556.0	NM_139307	246154.0	Mm.482140	NM_139307	ENSMUSG00000039646	Vasn	2610528G05Rik|Atia|Slitl2	vasorin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11015373-2	chr4	11014873	11015873	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7754.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-82782777-2	chr6	82782277	82783277	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-8323.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-13934980-2	chr11	13934480	13935480	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	244061.0	NR_131011	75280.0	Mm.108492	NR_131011	ENSMUSG00000085452	4930554G24Rik	-	RIKEN cDNA 4930554G24 gene	ncRNA	2.5	0.0	1.0	2.0	2.5	0.0
Merged-chr3-149438117-2	chr3	149437617	149438617	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	163380.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112284548-1	chr5	112284048	112285048	+	625.0	f1_balb.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	7857.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	9.5	23.5	11.0	3.0	9.0	11.0
Merged-chr1-178409163-2	chr1	178408663	178409663	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026626, intron 1 of 6)	intron (NM_026626, intron 1 of 6)	3145.0	NM_026626	68226.0	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95260213-1	chr11	95259713	95260713	+	625.0	f1_balb.idr	Intergenic	Intergenic	-1316.0	NM_053093	93670.0	Mm.40085	NM_053093	ENSMUSG00000020872	Tac4	AW489379|PPT-C	tachykinin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr12-112917732-1	chr12	112917232	112918232	+	625.0	f0_balb.idr	intron (NM_010588, intron 5 of 25)	intron (NM_010588, intron 5 of 25)	2809.0	NR_105906	102465567.0		NR_105906	ENSMUSG00000098338	Mir6941	Gm27923|mmu-mir-6941	microRNA 6941	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153158604-4	chr2	153158189	153159189	+	624.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2612.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116423479-2	chr11	116422887	116423887	+	624.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10355.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	69.0	169.0	143.0	51.5	141.0	90.5
Merged-chr9-75362469-2	chr9	75361969	75362969	+	624.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	14711.0	NM_013479	12049.0	Mm.25988	NM_013479	ENSMUSG00000032191	Bcl2l10	AA420380|AU023065|Boo|C85687|Diva	Bcl2-like 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65921925-2	chr5	65921425	65922425	+	624.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45199.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146181366-2	chr3	146180866	146181866	+	624.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 8 of 13)	intron (NM_001005846, intron 8 of 13)	31192.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118944771-2	chr14	118944271	118945271	+	624.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008929, intron 1 of 11)	intron (NM_008929, intron 1 of 11)	6839.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-68451666-2	chr16	68451166	68452166	+	624.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-830758.0	NM_178721	239857.0	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105637983-3	chr8	105637467	105638467	+	624.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151743)	promoter-TSS (NR_151743)	-493.0	NR_151742	546100.0	Mm.471801	NR_151742	ENSMUSG00000098120	Gm5914	-	predicted gene 5914	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61125758-1	chr18	61125258	61126258	+	624.666687	f1_balb.idr	exon (NM_001037859, exon 15 of 22)	exon (NM_001037859, exon 15 of 22)	8290.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	23.0	34.0	24.5	7.0	8.5	14.5
Merged-chr5-146824036-3	chr5	146823558	146824558	+	624.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-8832.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	8.5	44.0	30.0	9.5	25.5	15.5
Merged-chr8-34107523-2	chr8	34107024	34108024	+	624.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011722, intron 1 of 6)	MTD|LTR|ERVL-MaLR	290.0	NM_001293758	22428.0	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	13.5	49.0	21.0	8.0	20.0	36.0
Merged-chr9-103434381-2	chr9	103433881	103434881	+	624.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002896, intron 4 of 6)	intron (NM_001002896, intron 4 of 6)	10803.0	NR_040466	100529079.0	Mm.437003	NR_040466	ENSMUSG00000086236	5830418P13Rik	-	RIKEN cDNA 5830418P13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87910063-2	chr3	87909591	87910591	+	624.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331051, intron 1 of 6)	intron (NM_001331051, intron 1 of 6)	3241.0	NM_001331052	15191.0	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	12.5	43.0	24.0	35.0	91.0	29.0
Merged-chr11-32592706-2	chr11	32592206	32593206	+	624.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 7 of 18)	intron (NM_009288, intron 7 of 18)	-49849.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21570226-3	chr11	21569732	21570732	+	624.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316675, intron 1 of 8)	intron (NM_001316675, intron 1 of 8)	1702.0	NM_008618	17449.0	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	13.5	48.5	41.5	30.0	31.0	19.0
Merged-chr10-122008330-3	chr10	122007891	122008891	+	624.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081037, intron 1 of 21)	intron (NM_001081037, intron 1 of 21)	38924.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	3.0	0.0	2.5	3.0	0.0	2.5
Merged-chr5-62764345-4	chr5	62763851	62764851	+	624.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	1826.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-24401879-2	chr15	24401379	24402379	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	1011885.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38379021-2	chr18	38378521	38379521	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39886.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80112610-2	chr15	80112110	80113110	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207708, intron 3 of 3)	intron (NM_207708, intron 3 of 3)	-20544.0	NM_025609	66513.0	Mm.288245	NM_025609	ENSMUSG00000022414	Tab1	2310012M03Rik|Map3k7ip1|b2b449Clo	TGF-beta activated kinase 1/MAP3K7 binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103015095-2	chr14	103014595	103015595	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 2 of 2)	RMER1B|Other|Other	18708.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155202050-2	chr4	155201550	155202550	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	20485.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	0.0	0.0	0.5	0.0	1.0	0.0
Merged-chr16-76764466-2	chr16	76763966	76764966	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_155453, intron 1 of 3)	intron (NR_155453, intron 1 of 3)	14626.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137783423-2	chr5	137782923	137783923	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144913, intron 1 of 3)	intron (NM_144913, intron 1 of 3)	3278.0	NM_144913	231803.0	Mm.61193	NM_144913	ENSMUSG00000029726	Mepce	Bcdin3|D5Wsu46e	methylphosphate capping enzyme	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6267112-2	chr19	6266612	6267612	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2268.0	NR_029720	387187.0		NR_029720	ENSMUSG00000065523	Mir192	Mirn192|mir-192|mmu-mir-192	microRNA 192	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74515536-2	chr15	74515036	74516036	+	624.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174991)	promoter-TSS (NM_174991)	-660.0	NM_174991	107831.0	Mm.43133	NM_174991	ENSMUSG00000034730	Adgrb1	B830018M07Rik|Bai1|R75078|mKIAA4089	adhesion G protein-coupled receptor B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79710236-2	chr11	79709736	79710736	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1733.0	NR_029579	387188.0		NR_029579	ENSMUSG00000065395	Mir193a	Mir193|Mirn193|mir-193a|mmu-mir-193|mmu-mir-193a	microRNA 193a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57566212-2	chr16	57565712	57566712	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	16970.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88443265-2	chr17	88442765	88443765	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355742, intron 1 of 5)	B1_Mus1|SINE|Alu	2561.0	NM_001355742	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	0.0	8.5	7.0	3.0	0.0	0.5
Merged-chr6-16964518-2	chr6	16964018	16965018	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66077.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154934595-2	chr4	154934095	154935095	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6518.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-56658242-2	chr13	56657742	56658742	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44768.0	NM_008541	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	0.0	0.0	2.5	0.0	0.0	0.5
Merged-chr17-23570150-2	chr17	23569650	23570650	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-5924.0	NM_001033496	449521.0	Mm.268582	NM_001033496	ENSMUSG00000071256	Zfp213	BC038178|D17Ertd197e	zinc finger protein 213	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33645540-2	chr2	33645040	33646040	+	624.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_046275, exon 3 of 3)	non-coding (NR_046275, exon 3 of 3)	4347.0	NR_046275	100504399.0	Mm.72070	NM_177842		C130021I20Rik	-	Riken cDNA C130021I20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25226443-2	chr7	25225943	25226943	+	624.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175436, exon 3 of 3)	3' UTR (NM_175436, exon 3 of 3)	-2280.0	NR_046001	77124.0	Mm.294664	NM_178400	ENSMUSG00000090330	9130221H12Rik	AU016887	RIKEN cDNA 9130221H12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31353292-2	chr16	31352792	31353792	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28002.0	NR_155301	102636590.0	Mm.45825	NR_155301		AV205837	-	expressed sequence AV205837	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101168489-2	chr4	101167989	101168989	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 11 of 24)	intron (NM_146145, intron 11 of 24)	96793.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-110558065-3	chr13	110557559	110558559	+	624.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	163015.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	3.5	27.5	4.5	6.0	1.5	0.5
Merged-chr9-95639584-2	chr9	95639084	95640084	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 2 of 8)	intron (NM_029620, intron 2 of 8)	1956.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4623417-2	chr19	4622917	4623917	+	624.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105952)	TTS (NR_105952)	538.0	NR_105952	102466780.0		NR_105952	ENSMUSG00000098346	Mir6986	Gm27709|mmu-mir-6986	microRNA 6986	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69696622-2	chr11	69696122	69697122	+	624.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034097)	promoter-TSS (NM_001034097)	-524.0	NM_001159503	619441.0	Mm.8983	NM_001034097	ENSMUSG00000018752	Tnfsfm13	Tnfsf12-Tnfsf13|Tnfsf12Tnfsf13|Tnfsf12tnfsf13|Twe-pril	tumor necrosis factor (ligand) superfamily, membrane-bound member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102647702-2	chr12	102647202	102648202	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 2 of 9)	intron (NM_172584, intron 2 of 9)	37318.0	NR_035457	100316812.0		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-65667989-2	chr7	65667489	65668489	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172310, intron 10 of 18)	intron (NM_172310, intron 10 of 18)	23091.0	NM_172310	272396.0	Mm.35127	NM_172310	ENSMUSG00000030515	Tarsl2	A530046H20Rik	threonyl-tRNA synthetase-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44376876-2	chr7	44376376	44377376	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1846.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59707650-2	chr9	59707150	59708150	+	624.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033498)	promoter-TSS (NM_001033498)	13.0	NM_001357686	546134.0	Mm.297580	NM_001033498	ENSMUSG00000074259	Gramd2	BC064463|Gramd2a	GRAM domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-121078609-2	chr7	121078109	121079109	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-4079.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-63914897-2	chr7	63914414	63915414	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-1943.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	33.0	84.5	47.0	39.0	53.5	64.5
Merged-chr4-56793229-2	chr4	56792729	56793729	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026079, intron 6 of 36)	RMER15|LTR|ERVL	-9100.0	NM_001081420	230234.0	Mm.268148	NM_001081420	ENSMUSG00000038827	Fam206a	simiate	family with sequence similarity 206, member A	protein-coding	3.0	6.0	2.0	3.5	1.0	3.0
Merged-chr10-42226439-2	chr10	42225939	42226939	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	50303.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100454911-2	chr7	100454411	100455411	+	624.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001017985, exon 31 of 33)	exon (NM_001017985, exon 31 of 33)	-18080.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-58983765-2	chr19	58983265	58984265	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175172, intron 14 of 14)	B4A|SINE|B4	-40093.0	NM_001327998	73442.0	Mm.39739	NM_175199	ENSMUSG00000025092	Hspa12a	1700063D12Rik|AI118035|AI840429|AW048913|AW556406|D5Mgi40|Gm19925|mKIAA0417	heat shock protein 12A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91460860-2	chr1	91460360	91461360	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1532.0	NM_011066	18627.0	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	0.0	0.0	0.0	0.0	0.0	6.0
Merged-chr8-84971280-2	chr8	84970741	84971741	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317385, intron 3 of 5)	intron (NM_001317385, intron 3 of 5)	1619.0	NM_011563	21672.0	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	0.0	5.5	2.5	2.0	1.0	6.0
Merged-chr13-106185216-2	chr13	106184716	106185716	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur1|LINE|L1	741523.0	NM_008308	15550.0	Mm.4716	NM_008308	ENSMUSG00000021721	Htr1a	Gpcr18	5-hydroxytryptamine (serotonin) receptor 1A	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr8-77449748-2	chr8	77449248	77450248	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 3 of 22)	intron (NM_030113, intron 3 of 22)	-67308.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78985733-2	chr11	78985233	78986233	+	624.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159301)	promoter-TSS (NM_001159301)	-809.0	NM_010708	16859.0	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32633380-2	chr12	32632880	32633880	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-186955.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.0	0.0	0.0	0.0	6.5	4.0
Merged-chr11-106615070-2	chr11	106614570	106615570	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-2140.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88176268-2	chr3	88175768	88176768	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045997, intron 1 of 2)	L1Md_T|LINE|L1	1517.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132383551-2	chr4	132383051	132384051	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175306, intron 3 of 13)	B1F2|SINE|Alu	-29865.0	NR_003270	399101.0	Mm.486919	NR_002904	ENSMUSG00000085241	Snhg3	Rnu17d|U17HG	small nucleolar RNA host gene 3	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37073026-2	chr10	37072526	37073526	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65900.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-18658787-2	chr3	18658287	18659287	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-178310.0	NR_040544	73959.0	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128801003-2	chr2	128800522	128801522	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 18 of 18)	intron (NM_008587, intron 18 of 18)	-17281.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	4.0	0.0	6.0	2.0	5.0	6.5
Merged-chr12-78224231-2	chr12	78223731	78224731	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-2424.0	NM_172952	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139274298-2	chr5	139273798	139274798	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 8 of 10)	intron (NM_172723, intron 8 of 10)	20801.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145794861-2	chr6	145794361	145795361	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13522.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141373492-2	chr7	141372992	141373992	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8382.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-137409598-2	chr7	137409098	137410098	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029886, intron 1 of 3)	MLTR14|LTR|ERV1	1158.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16326722-2	chr19	16326222	16327222	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 3 of 6)	intron (NM_008139, intron 3 of 6)	-11718.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92707819-2	chr16	92707319	92708319	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-10490.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97825487-2	chr3	97824987	97825987	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 3 of 46)	intron (NM_001039376, intron 3 of 46)	-57473.0	NR_110360	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43293758-3	chr5	43293257	43294257	+	624.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58403.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56440875-2	chr17	56440375	56441375	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252455, intron 6 of 27)	intron (NM_001252455, intron 6 of 27)	21346.0	NM_001252456	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67338864-2	chr17	67338364	67339364	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	(CAA)n|Simple_repeat|Simple_repeat	15595.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128969550-2	chr4	128969050	128970050	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-7095.0	NM_001301841	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98412044-2	chr11	98411544	98412544	+	624.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001003817)	promoter-TSS (NM_001003817)	-440.0	NM_001003817	13866.0	Mm.290822	NM_001003817	ENSMUSG00000062312	Erbb2	Erbb-2|HER-2|HER2|Neu|c-erbB2|c-neu|l11Jus8|mKIAA3023	erb-b2 receptor tyrosine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119793356-2	chr8	119792856	119793856	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14940.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145736780-2	chr2	145736280	145737280	+	624.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 2 of 3)	MER54A|LTR|ERVL	35585.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16353737-2	chr19	16353237	16354237	+	624.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 5 of 6)	intron (NM_008139, intron 5 of 6)	-38733.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70507199-2	chr11	70506699	70507699	+	624.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029360, intron 1 of 4)	B1_Mm|SINE|Alu	1925.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-114249290-3	chr2	114248791	114249791	+	624.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47859.0	NM_175466	228491.0	Mm.132523	NM_175466	ENSMUSG00000040321	Zfp770	6430601A21Rik|Znf770	zinc finger protein 770	protein-coding	2.0	0.0	0.0	0.0	0.5	1.0
Merged-chr12-85958655-2	chr12	85958155	85959155	+	624.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	120386.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-57017398-2	chr4	57016902	57017902	+	624.25	f0_balb.idr|f1_balb.idr	intron (NM_001355492, intron 21 of 24)	intron (NM_001355492, intron 21 of 24)	-27011.0	NM_001142965	230235.0	Mm.207654	NM_001142965	ENSMUSG00000045589	Frrs1l	6430704M03Rik	ferric-chelate reductase 1 like	protein-coding	0.0	0.0	1.0	0.0	2.0	1.0
Merged-chr17-78915916-2	chr17	78915414	78916414	+	624.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177402)	promoter-TSS (NM_001177402)	-585.0	NM_001177403	68554.0	Mm.391820	NM_001177402	ENSMUSG00000062691	Cebpzos	1110001A16Rik	CCAAT/enhancer binding protein (C/EBP), zeta, opposite strand	protein-coding	5.0	5.0	5.0	16.5	11.0	3.0
Merged-chr6-134124571-2	chr6	134124071	134125071	+	624.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	RMER15|LTR|ERVL	88871.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.0	1.5	0.5	0.0	1.5	0.5
Merged-chr10-96645518-2	chr10	96645018	96646018	+	624.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28517.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-63240812-2	chr2	63240312	63241312	+	624.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-56525.0	NM_133207	170738.0	Mm.242532	NM_133207	ENSMUSG00000059742	Kcnh7	9330137I11Rik|Kv11.3|erg3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32730931-3	chr12	32730437	32731437	+	624.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89398.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136046131-2	chr5	136045631	136046631	+	624.208374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7635.0	NM_175309	100647.0	Mm.3089	NM_175309	ENSMUSG00000042985	Upk3b	AI447729|AI957187|P35|PMS2L14|UpIIIb	uroplakin 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-61152315-3	chr19	61151801	61152801	+	624.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR50A|LTR|ERVK	-11461.0	NR_131954	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	2.0	2.0	15.5	5.0	8.0	0.0
Merged-chr1-39768061-3	chr1	39767554	39768554	+	624.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4A|LTR|ERVK	37278.0	NM_001177348	100042065.0	Mm.209678	NM_001177348	ENSMUSG00000091937	Gm3646	-	predicted gene 3646	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-105577481-2	chr11	105576981	105577981	+	624.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-12505.0	NM_181071	77097.0	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4138226-2	chr7	4137726	4138726	+	624.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172736, intron 1 of 14)	intron (NM_172736, intron 1 of 14)	1170.0	NM_172736	232798.0	Mm.22831	NM_172736	ENSMUSG00000035545	Leng8	AW049671	leukocyte receptor cluster (LRC) member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120022422-2	chr9	120021922	120022922	+	624.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011724, intron 1 of 2)	intron (NM_011724, intron 1 of 2)	1176.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84984213-2	chr15	84983671	84984671	+	624.133301	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	3800.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59416633-3	chr4	59416097	59417097	+	624.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 3 of 16)	intron (NM_001163288, intron 3 of 16)	22036.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99902223-3	chr12	99901705	99902705	+	624.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028354, intron 5 of 15)	(TTTTG)n|Simple_repeat|Simple_repeat	17690.0	NM_028354	104884.0	Mm.312323	NM_028354	ENSMUSG00000021177	Tdp1	2810481F14Rik|4921509N21Rik|AI838772|AW493413|E430034L06Rik|MLZ-501|SCAN1	tyrosyl-DNA phosphodiesterase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106248503-1	chr9	106248003	106249003	+	624.0	f1_c57bl6.idr	promoter-TSS (NM_001291835)	promoter-TSS (NM_001291835)	-549.0	NM_020559	11655.0	Mm.290578	NM_020559	ENSMUSG00000032786	Alas1	ALAS|ALAS-N|Alas-1|Alas-h	aminolevulinic acid synthase 1	protein-coding	15.5	10.0	21.0	15.5	16.0	31.5
Merged-chr9-78024987-2	chr9	78024487	78025487	+	624.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26971.0	NM_008103	14531.0	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-31936769-1	chr4	31936269	31937269	+	624.0	f0_balb.idr	Intergenic	Intergenic	-27338.0	NM_009316	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	0.0	1.0	0.0	0.0	1.0	0.0
Merged-chr1-74285641-2	chr1	74285141	74286141	+	624.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190444)	promoter-TSS (NM_001190444)	607.0	NM_001039509	56695.0	Mm.384726	NM_019999	ENSMUSG00000026179	Pnkd	2210013N15Rik|2810403H05Rik|AI854243|Brp17|MNCb-5687|MR-1|Tahccp2	paroxysmal nonkinesiogenic dyskinesia	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-154181028-2	chr1	154180528	154181528	+	624.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20159.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-15792089-2	chr1	15791589	15792589	+	624.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13557.0	NM_009352	21749.0	Mm.4306	NM_009352	ENSMUSG00000025925	Terf1	Pin2|Trbf1|Trf1	telomeric repeat binding factor 1	protein-coding	1.5	1.0	0.0	1.5	1.0	0.0
Merged-chr6-87474562-1	chr6	87474062	87475062	+	624.0	f1_balb.idr	intron (NM_001037727, intron 5 of 10)	(TC)n|Simple_repeat|Simple_repeat	21765.0	NR_104483	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	1.0	0.0	1.5	2.0	0.0	1.5
Merged-chr6-35252184-2	chr6	35251684	35252684	+	624.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015608)	promoter-TSS (NR_015608)	-515.0	NR_015608	67705.0	Mm.228046	NR_015608	ENSMUSG00000073155	1810058I24Rik	AI414869|AI848234	RIKEN cDNA 1810058I24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-71558517-2	chr18	71558017	71559017	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007831, intron 9 of 28)	intron (NM_007831, intron 9 of 28)	792552.0	NM_007831	13176.0	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50871485-1	chr14	50870985	50871985	+	624.0	f1_c57bl6.idr	promoter-TSS (NM_009351)	promoter-TSS (NM_009351)	-931.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	21.0	37.0	38.5	9.5	9.0	16.5
Merged-chr8-83593667-2	chr8	83593166	83594166	+	624.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_134118, intron 1 of 12)	intron (NM_134118, intron 1 of 12)	825.0	NM_027179	106529.0	Mm.352239	NM_027179	ENSMUSG00000031708	Tecr	2410016D23Rik|A230102P12Rik|AI173355|D17Ertd178e|Gpsn2|SC2	trans-2,3-enoyl-CoA reductase	protein-coding	32.0	60.5	78.5	34.5	74.0	58.5
Merged-chr15-28833904-2	chr15	28833404	28834404	+	624.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	630138.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-89873262-2	chr10	89872775	89873775	+	624.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001128086)	promoter-TSS (NM_001128086)	-234.0	NM_001359240	77531.0	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1|AIDA-1b|C030032C09Rik|E530015N03Rik|EB-1|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.0	0.0	1.0	0.0	0.0	0.5
Merged-chr5-21384317-1	chr5	21383817	21384817	+	624.0	f0_balb.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	11644.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94080725-2	chr10	94080225	94081225	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 3 of 20)	intron (NM_053072, intron 3 of 20)	44724.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	9.5	50.0	17.0	7.0	7.5	9.5
Merged-chr13-46734361-2	chr13	46733861	46734861	+	624.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-6512.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	3.5	23.0	22.5	5.5	23.5	32.5
Merged-chr4-96621992-2	chr4	96621492	96622492	+	624.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-30507.0	NM_028979	74519.0	Mm.458387	NM_028979	ENSMUSG00000015224	Cyp2j9	8430417E17Rik	cytochrome P450, family 2, subfamily j, polypeptide 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135153643-2	chr4	135153143	135154143	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019732, intron 2 of 5)	intron (NM_019732, intron 2 of 5)	32998.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16296172-2	chr7	16295672	16296672	+	624.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9377.0	NM_001136471	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	20.5	12.0	27.5	7.5	7.5	7.0
Merged-chr6-135444851-2	chr6	135444343	135445343	+	624.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77350.0	NM_001288627	13730.0	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	2.5	2.5	8.5	2.5	4.5	4.0
Merged-chr7-45590604-2	chr7	45590104	45591104	+	624.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009737)	TTS (NM_009737)	-15428.0	NR_038165	71661.0	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34595624-2	chr19	34595124	34596124	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101605, intron 1 of 1)	MTD|LTR|ERVL-MaLR	3803.0	NM_001110517	667373.0	Mm.371956	NM_001101605	ENSMUSG00000079339	Ifit1bl1	Gm14446|Ifit1c	interferon induced protein with tetratricpeptide repeats 1B like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-7128702-2	chr15	7128202	7129202	+	624.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113386)	promoter-TSS (NM_001113386)	-870.0	NM_001113386	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125872878-2	chr8	125872378	125873378	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175561, intron 8 of 33)	intron (NM_175561, intron 8 of 33)	-25036.0	NR_155422	102632990.0	Mm.429446	NR_155422		A730098A19Rik	-	RIKEN cDNA A730098A19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-41887936-2	chr5	41887427	41888427	+	624.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3415.0	NR_105842	102465225.0		NR_105842	ENSMUSG00000098264	Mir6414	Gm27518|mmu-mir-6414	microRNA 6414	ncRNA	11.0	3.5	0.0	11.0	0.0	4.0
Merged-chr14-50823442-2	chr14	50822940	50823940	+	624.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009351)	TTS (NM_009351)	15524.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	26.5	26.0	13.0	19.0	7.0	7.0
Merged-chr1-78488100-4	chr1	78487588	78488588	+	624.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001278075, intron 1 of 17)	intron (NM_001278075, intron 1 of 17)	809.0	NR_102758	23874.0	Mm.17898	NM_011811	ENSMUSG00000026245	Farsb	C76708|Farsa|Farsl|Farslb|Frsb	phenylalanyl-tRNA synthetase, beta subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-13580256-2	chr2	13579756	13580756	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011701, intron 6 of 8)	MIRb|SINE|MIR	5945.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-104240981-1	chr7	104240481	104241481	+	624.0	f1_c57bl6.idr	Intergenic	Intergenic	-3476.0	NM_001357679	94094.0	Mm.326945	NM_030684	ENSMUSG00000056144	Trim34a	Trim34|Trim34-1	tripartite motif-containing 34A	protein-coding	2.0	9.0	9.5	7.0	11.0	2.5
Merged-chr14-122406153-2	chr14	122405653	122406653	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033326, intron 1 of 3)	intron (NR_033326, intron 1 of 3)	44962.0	NR_033325	328479.0	Mm.86095	NR_033325	ENSMUSG00000064052	Gm5089	6530402A20|C030005G22Rik|EG328479	predicted gene 5089	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-3546882-3	chr13	3546396	3547396	+	624.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008112, intron 1 of 10)	RMER6A|LTR|ERVK	8821.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21888224-2	chr10	21887724	21888724	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 1 of 13)	intron (NM_001161845, intron 1 of 13)	6040.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	33.0	24.0	15.0	12.5	20.0	21.5
Merged-chr5-96941480-2	chr5	96941054	96942054	+	624.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20282.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	0.0	3.5	0.0	2.0	10.0	5.5
Merged-chr17-15825571-1	chr17	15825071	15826071	+	624.0	f0_c57.idr	intron (NM_178615, intron 1 of 2)	CpG	1015.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115511699-1	chr5	115511199	115512199	+	624.0	f1_balb.idr	intron (NM_011223, intron 1 of 10)	B1F|SINE|Alu	5023.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	10.5	9.0	15.0	14.5	28.0	10.0
Merged-chr19-58910941-2	chr19	58910441	58911441	+	624.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_037247)	TTS (NR_037247)	818.0	NR_037247	100526480.0		NR_037247	ENSMUSG00000092813	Mir3086	mir-3086|mmu-mir-3086	microRNA 3086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127904802-2	chr7	127904302	127905302	+	624.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009739, exon 2 of 12)	5' UTR (NM_009739, exon 2 of 12)	729.0	NM_009739	12041.0	Mm.425495	NM_009739	ENSMUSG00000030802	Bckdk	AI327402	branched chain ketoacid dehydrogenase kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-47569608-2	chr2	47569108	47570108	+	624.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-1244501.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128375032-2	chr6	128374532	128375532	+	624.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027697)	promoter-TSS (NM_027697)	-478.0	NM_027697	71149.0	Mm.483176	NM_027697	ENSMUSG00000079304	Tex52	4933413G19Rik	testis expressed 52	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-70266934-2	chr10	70266434	70267434	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025807, intron 2 of 5)	intron (NM_025807, intron 2 of 5)	21658.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103034798-2	chr14	103034298	103035298	+	624.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045657)	promoter-TSS (NR_045657)	-995.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10490307-1	chr17	10489807	10490807	+	624.0	f1_c57bl6.idr	intron (NR_077237, intron 1 of 1)	intron (NR_077237, intron 1 of 1)	34091.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0.0	0.0	1.5	0.0	0.0	1.5
Merged-chr8-84953031-2	chr8	84952532	84953532	+	624.0	f0_c57.idr|f1_balb.idr	intron (NM_001357328, intron 5 of 6)	intron (NM_001357328, intron 5 of 6)	5042.0	NM_001357328	234542.0	Mm.461701	NM_144929	ENSMUSG00000048617	Rtbdn	A330096I21Rik|BC022744|Rtbnd	retbindin	protein-coding	1.5	5.0	5.5	2.5	0.5	1.0
Merged-chr11-116006779-2	chr11	116006279	116007279	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005608, intron 35 of 39)	intron (NM_001005608, intron 35 of 39)	5940.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	0.0	1.0	2.0	0.0	0.0	0.5
Merged-chr9-94671649-2	chr9	94671149	94672149	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 1 of 15)	intron (NM_177909, intron 1 of 15)	1757.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101157405-2	chr4	101156905	101157905	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 20 of 24)	intron (NM_146145, intron 20 of 24)	88367.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-13093942-1	chr6	13093442	13094442	+	624.0	f1_balb.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	24183.0	NM_027992	71900.0	Mm.27742	NM_027992	ENSMUSG00000029571	Tmem106b	2310036D22Rik|5830455K21Rik|6430519M21Rik|AI428776|AI661344	transmembrane protein 106B	protein-coding	1.0	0.0	1.0	0.0	9.0	0.5
Merged-chr17-94869270-2	chr17	94868770	94869770	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024731, intron 1 of 4)	B1_Mm|SINE|Alu	4352.0	NM_001024731	100044193.0		NM_001024731	ENSMUSG00000095193	Gm20939	-	predicted gene, 20939	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-86191455-1	chr5	86190955	86191955	+	624.0	f1_c57bl6.idr	intron (NM_001310653, intron 1 of 1)	intron (NM_001310653, intron 1 of 1)	6446.0	NM_001310653	14715.0	Mm.26791	NM_010323	ENSMUSG00000029255	Gnrhr	-	gonadotropin releasing hormone receptor	protein-coding	13.0	21.0	25.5	0.0	8.5	0.0
Merged-chr4-131919467-2	chr4	131918967	131919967	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_102394, intron 1 of 2)	intron (NR_102394, intron 1 of 2)	562.0	NR_102394	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38291616-2	chr15	38291116	38292116	+	624.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001289471, exon 5 of 5)	3' UTR (NM_001289471, exon 5 of 5)	8284.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141170223-2	chr4	141169723	141170723	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172518, intron 2 of 9)	intron (NM_172518, intron 2 of 9)	22301.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180225060-2	chr2	180224560	180225560	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081171, intron 1 of 78)	CpG	799.0	NM_001081171	16776.0	Mm.4339	NM_001081171	ENSMUSG00000015647	Lama5	AA408760|AA408762|AI853660|[a]5|laminin-511|mKIAA0533	laminin, alpha 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-65147211-3	chr14	65146700	65147700	+	624.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-49094.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20493888-2	chr13	20493381	20494381	+	624.0	f0_balb.idr|f0_c57.idr	intron (NM_198093, intron 1 of 6)	intron (NM_198093, intron 1 of 6)	20891.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.0	2.5	5.5	1.0	3.5	8.0
Merged-chr11-72430382-1	chr11	72429882	72430882	+	624.0	f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-5144.0	NM_027819	71522.0	Mm.23336	NM_027819	ENSMUSG00000040471	Ggt6	9030405D14Rik|AI427679|AW490214	gamma-glutamyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110446363-2	chr5	110445863	110446863	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317042, intron 1 of 2)	intron (NM_001317042, intron 1 of 2)	2140.0	NM_001317042	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	0.0	0.0	1.5	0.0	0.0	2.5
Merged-chr19-8806623-2	chr19	8806123	8807123	+	624.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4093.0	NM_001098237	75291.0	Mm.23423	NM_133759	ENSMUSG00000071661	Zbtb3	4930563M09Rik	zinc finger and BTB domain containing 3	protein-coding	10.0	16.0	7.5	10.5	15.5	7.5
Merged-chr6-128315905-2	chr6	128315405	128316405	+	624.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-15092.0	NM_011567	21679.0	Mm.14774	NM_011567	ENSMUSG00000030353	Tead4	ETFR-2|Etfr2|FR-19|Rtef1|TEAD-4|TEF-3|Tcf13r1|Tef3|Tefr|Tefr1|Tefr1a	TEA domain family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-87386669-2	chr12	87386169	87387169	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011479, intron 1 of 11)	intron (NM_011479, intron 1 of 11)	1686.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34352178-3	chr6	34351670	34352670	+	624.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1976.0	NM_008012	14187.0	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14096989-1	chr8	14096489	14097489	+	624.0	f1_balb.idr	intron (NM_001145965, intron 1 of 14)	CpG	1114.0	NM_172910	244310.0	Mm.404697	NM_172910	ENSMUSG00000047495	Dlgap2	6430596N04Rik|Dap-2|Dap2|Sapap2	DLG associated protein 2	protein-coding	0.0	6.5	0.5	4.0	0.0	1.0
Merged-chr17-6654873-1	chr17	6654373	6655373	+	624.0	f1_c57bl6.idr	intron (NM_001166630, intron 1 of 4).2	intron (NM_001166630, intron 1 of 4).2	958.0	NM_001166630	100040563.0	Mm.457381	NM_001166630	ENSMUSG00000000579	Dynlt1c	100040603|Dynlt1d	dynein light chain Tctex-type 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-115745426-1	chr3	115744926	115745926	+	624.0	f1_c57bl6.idr	Intergenic	Intergenic	-30371.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	9.0	39.5	29.5	11.5	0.0	8.5
Merged-chr4-114949282-2	chr4	114948782	114949782	+	624.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23269.0	NM_015758	30923.0	Mm.377122	NM_015758	ENSMUSG00000044518	Foxe3	FREAC8|dyl|rct	forkhead box E3	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr5-123034150-2	chr5	123033650	123034650	+	624.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12866.0	NM_029112	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37431196-2	chr1	37430696	37431696	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026123, intron 1 of 5)	intron (NM_026123, intron 1 of 5)	1057.0	NM_001356528	67387.0	Mm.27404	NM_026123	ENSMUSG00000026111	Unc50	1110002A21Rik|GMH1|UNCL|URP	unc-50 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47884973-1	chr17	47884473	47885473	+	624.0	f1_c57bl6.idr	intron (NM_028767, intron 3 of 16)	ID_B1|SINE|B4	39659.0	NM_028767	74123.0	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	0.0	7.5	1.0	5.5	12.0	6.5
Merged-chr8-75070478-2	chr8	75069978	75070978	+	624.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011622)	TTS (NM_011622)	-23140.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr14-103474066-2	chr14	103473566	103474566	+	624.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39275.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78874299-3	chr15	78873780	78874780	+	624.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2910.0	NM_145929	106039.0	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	3.5	0.0	5.5	1.5	0.0	6.5
Merged-chr2-164764444-2	chr2	164763945	164764945	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133763, intron 10 of 12)	L1Md_F2|LINE|L1	-5484.0	NM_026785	68612.0	Mm.89830	NM_026785	ENSMUSG00000001403	Ube2c	1110015A16Rik|D2Ertd695e	ubiquitin-conjugating enzyme E2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75556283-2	chr10	75555783	75556783	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198860, intron 2 of 3)	intron (NM_198860, intron 2 of 3)	4047.0	NM_198860	192734.0	Mm.259320	NM_198860	ENSMUSG00000046807	Lrrc75b	AI646023|Fam211b	leucine rich repeat containing 75B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-107590043-2	chr8	107589543	107590543	+	624.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR24|LTR|ERV1	-1561.0	NM_010817	17463.0	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57979341-2	chr15	57978841	57979841	+	624.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6562.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-89544614-2	chr13	89544112	89545112	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013500, intron 1 of 4)	L1_Mus4|LINE|L1	3976.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	0.0	3.0	0.5	0.0	0.0	5.0
Merged-chr6-140611167-2	chr6	140610667	140611667	+	624.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-11496.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171020869-2	chr1	171020369	171021369	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144559, intron 3 of 4)	RLTR12D|LTR|ERVK	1943.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21028551-2	chr9	21028051	21029051	+	624.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023892)	promoter-TSS (NM_023892)	-822.0	NM_023892	78369.0	Mm.30220	NM_023892	ENSMUSG00000001014	Icam4	1810015M19Rik|Cd242|ICAM-4	intercellular adhesion molecule 4, Landsteiner-Wiener blood group	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83224007-1	chr11	83223507	83224507	+	624.0	f0_c57.idr	intron (NR_015519, intron 1 of 3)	intron (NR_015519, intron 1 of 3)	431.0	NR_015519	100043636.0	Mm.295569	NR_015519	ENSMUSG00000087107	AI662270	AW496474	expressed sequence AI662270	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-85370461-2	chr6	85369961	85370961	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003955, intron 1 of 5)	intron (NM_001003955, intron 1 of 5)	4173.0	NM_177466	52055.0	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-17404250-3	chr14	17403753	17404753	+	624.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-256707.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66176971-1	chr14	66176471	66177471	+	624.0	f1_balb.idr	intron (NM_001162366, intron 10 of 30)	intron (NM_001162366, intron 10 of 30)	36011.0	NM_144803	110902.0	Mm.57350	NM_144803	ENSMUSG00000022041	Chrna2	Acra-2|Acra2|BC011490	cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal)	protein-coding	3.0	0.0	4.5	0.5	0.5	0.0
Merged-chr8-68187502-1	chr8	68187002	68188002	+	624.0	f0_balb.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-89026.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	28.5	9.5	5.5	5.5	27.5	15.5
Merged-chr6-145126548-3	chr6	145126055	145127055	+	623.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008511, intron 1 of 18)	Lx9|LINE|L1	4816.0	NM_008511	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	9.0	0.0	2.0	2.0	11.5	1.0
Merged-chr4-63897391-3	chr4	63896879	63897879	+	623.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36095.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-52064584-3	chr11	52064073	52065073	+	623.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166654, intron 13 of 13)	B3|SINE|B2	-34251.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90642472-2	chr2	90641972	90642972	+	623.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34743.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115655268-2	chr11	115654768	115655768	+	623.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 3 of 5)	intron (NM_001313936, intron 3 of 5)	-26973.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-42978267-3	chr4	42977760	42978760	+	623.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	8314.0	NM_026088	67317.0	Mm.478018	NM_026088	ENSMUSG00000028451	1700022I11Rik	-	RIKEN cDNA 1700022I11 gene	protein-coding	3.0	0.0	4.0	3.0	0.0	3.5
Merged-chr1-161748293-3	chr1	161747778	161748778	+	623.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40217.0	NM_001205243	14103.0	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	7.0	6.0	4.0	4.0	3.0	2.0
Merged-chr9-66914019-2	chr9	66913519	66914519	+	623.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	5686.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83419007-2	chr11	83418507	83419507	+	623.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001361566, exon 4 of 4)	3' UTR (NM_001361566, exon 4 of 4)	8935.0	NM_001013386	276952.0	Mm.66275	NM_001013386	ENSMUSG00000020684	Rasl10b	B230331P10Rik|Gm729|VTS58635	RAS-like, family 10, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-74972526-3	chr8	74972043	74973043	+	623.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-21107.0	NM_001316753	70823.0	Mm.261739	NM_178017	ENSMUSG00000034518	Hmgxb4	4733401K04Rik|AI316803|Hmgb2l1	HMG box domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79534353-3	chr12	79533853	79534853	+	623.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	237002.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-127169674-3	chr4	127169178	127170178	+	623.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198618, intron 1 of 11)	intron (NM_198618, intron 1 of 11)	474.0	NM_198618	242667.0	Mm.331885	NM_198618	ENSMUSG00000042388	Dlgap3	BC058433|DAP-3|DAP3|Prpl8|Sapap3	DLG associated protein 3	protein-coding	0.0	4.0	7.0	0.0	0.0	0.5
Merged-chr2-102791857-3	chr2	102791374	102792374	+	623.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45114.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	0.5	0.0	0.0	0.0	5.0	0.0
Merged-chr18-53224397-3	chr18	53223885	53224885	+	623.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21277.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23535228-4	chr17	23534720	23535720	+	623.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15579.0	NR_126485	320020.0	Mm.445111	NR_126484		6330415G19Rik	-	RIKEN cDNA 6330415G19 gene	ncRNA	13.5	10.0	3.5	0.5	9.0	0.0
Merged-chr8-126616385-2	chr8	126615885	126616885	+	623.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22949.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	3.5	4.5	4.0	1.0	7.0	4.0
Merged-chr2-71539188-3	chr2	71538666	71539666	+	623.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-1275.0	NR_002854	111970.0	Mm.4543	NR_002854		Dlx1as	Dix1as|Dlx1os	distal-less homeobox 1, antisense	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141951598-2	chr4	141951098	141952098	+	623.583374	f1_balb.idr|f1_c57bl6.idr	exon (NM_177868, exon 13 of 32)	exon (NM_177868, exon 13 of 32)	-31394.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-119087774-3	chr1	119087311	119088311	+	623.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34192.0	NM_001081125	14633.0	Mm.273292	NM_001081125	ENSMUSG00000048402	Gli2	-	GLI-Kruppel family member GLI2	protein-coding	0.0	0.0	0.5	3.0	0.0	0.0
Merged-chr15-76472713-2	chr15	76472215	76473215	+	623.5	f0_balb.idr|f1_balb.idr	intron (NM_013481, intron 2 of 15)	intron (NM_013481, intron 2 of 15)	4554.0	NM_013481	12181.0	Mm.4283	NM_013481	ENSMUSG00000022557	Bop1	AU020183|AW146150|D18861|Erb1p|Kiaa0124|mKIAA0124	block of proliferation 1	protein-coding	0.0	6.0	3.5	1.0	15.0	15.0
Merged-chr5-43840183-2	chr5	43839662	43840662	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009763, intron 7 of 8)	B1_Mur3|SINE|Alu	21269.0	NM_009763	12182.0	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	0.0	0.0	2.5	0.0	10.5	1.0
Merged-chr18-73767775-2	chr18	73767275	73768275	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13296.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	0.5	0.0	4.0	0.0	0.0	1.5
Merged-chr2-103424361-2	chr2	103423861	103424861	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010125, intron 1 of 6)	intron (NM_010125, intron 1 of 6)	293.0	NM_010125	13711.0	Mm.20888	NM_010125	ENSMUSG00000027186	Elf5	ESE-2|ESE-5|ESE-5.	E74-like factor 5	protein-coding	0.0	4.5	0.0	0.0	1.5	0.0
Merged-chr13-100213898-2	chr13	100213398	100214398	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010870, intron 14 of 14)	intron (NM_010870, intron 14 of 14)	-11776.0	NM_010872	17948.0	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130812693-2	chr4	130812193	130813193	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	20156.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121684674-2	chr14	121684174	121685174	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134074, intron 1 of 52)	RMER1B|Other|Other	13743.0	NM_001347596	105445.0	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107764790-2	chr13	107764290	107765290	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	77393.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3489843-2	chr8	3489343	3490343	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-3295.0	NM_080461	140482.0	Mm.299073	NM_080461	ENSMUSG00000047264	Zfp358	Zfend	zinc finger protein 358	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81184289-2	chr7	81183789	81184789	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-29515.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46261458-2	chr4	46260958	46261958	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65147.0	NM_011728	22590.0	Mm.247036	NM_011728	ENSMUSG00000028329	Xpa	AI573865|Xpac	xeroderma pigmentosum, complementation group A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126599652-2	chr7	126599152	126600152	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4742.0	NM_145636	246779.0	Mm.222632	NM_145636	ENSMUSG00000044701	Il27	IL-27|IL-27p28|Il30|p28	interleukin 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96590956-2	chr15	96590456	96591456	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166456, intron 5 of 15)	Lx8|LINE|L1	51006.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32431705-2	chr18	32431205	32432205	+	623.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001083334, exon 12 of 15)	exon (NM_001083334, exon 12 of 15)	-53421.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117180471-2	chr11	117179971	117180971	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19190.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-72757750-2	chr15	72757250	72758250	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029640, intron 16 of 21)	intron (NM_029640, intron 16 of 21)	52574.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0.0	1.0	0.0	0.0	0.0	2.5
Merged-chr10-95590415-1	chr10	95589915	95590915	+	623.5	f0_balb.idr	Intergenic	Intergenic	-26269.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124835678-2	chr6	124835178	124836178	+	623.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013530, exon 9 of 10)	exon (NM_013530, exon 9 of 10)	4597.0	NM_013530	14695.0	Mm.68889	NM_013530	ENSMUSG00000023439	Gnb3	Gnb-3	guanine nucleotide binding protein (G protein), beta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36729023-2	chr18	36728523	36729523	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2208.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	1.5	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172215188-2	chr1	172214701	172215701	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009813, intron 5 of 10)	intron (NM_009813, intron 5 of 10)	4694.0	NM_009813	12372.0	Mm.12829	NM_009813	ENSMUSG00000007122	Casq1	CSQ|CSQ-1|CSQ1|sCSQ	calsequestrin 1	protein-coding	0.0	4.0	10.0	0.0	4.0	6.5
Merged-chr11-97804047-2	chr11	97803547	97804547	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010688, intron 1 of 6)	intron (NM_010688, intron 1 of 6)	4482.0	NM_010688	16796.0	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	2.5	0.5	1.0	0.5	0.0	0.5
Merged-chr7-111478299-1	chr7	111477799	111478799	+	623.5	f0_balb.idr	intron (NM_001360903, intron 10 of 10)	intron (NM_001360903, intron 10 of 10)	301678.0	NM_001360903	233733.0	Mm.323322	NM_173739	ENSMUSG00000038296	Galnt18	2900011G21Rik|BC024988|Galntl4|galNAc-T18|mpp-GalNAc-T18(O18)	polypeptide N-acetylgalactosaminyltransferase 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-114753941-2	chr9	114753441	114754441	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	22738.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62171657-2	chr18	62171153	62172153	+	623.5	f0_balb.idr|f1_balb.idr	Intergenic	RLTR17|LTR|ERVK	8328.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	1.5	22.0	6.0	3.0	11.5	12.5
Merged-chr17-83866760-2	chr17	83866260	83867260	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12342.0	NR_155491	320021.0	Mm.379475	NR_155490		C430042M11Rik	-	RIKEN cDNA C430042M11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3680953-2	chr4	3680453	3681453	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	2832.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	9.0	45.5	25.5	3.0	46.0	19.0
Merged-chr12-17006928-2	chr12	17006403	17007403	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001201333, intron 3 of 3)	intron (NM_001201333, intron 3 of 3)	4824.0	NM_001201332	73667.0	Mm.159048	NM_001201332	ENSMUSG00000071398	2410004P03Rik	-	RIKEN cDNA 2410004P03 gene	protein-coding	0.0	0.0	0.5	2.5	0.0	1.5
Merged-chr1-29276242-2	chr1	29275742	29276742	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F|LINE|L1	-145246.0	NR_105760	102465174.0		NR_105760	ENSMUSG00000099257	Mir6342	Gm27268|mmu-mir-6342	microRNA 6342	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-141057656-2	chr5	141057156	141058156	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57060.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-104153022-1	chr13	104152522	104153522	+	623.5	f0_balb.idr	intron (NM_025879, intron 7 of 12)	intron (NM_025879, intron 7 of 12)	25444.0	NM_025879	66975.0	Mm.272541	NM_025879	ENSMUSG00000021711	Trappc13	2410002O22Rik|2610524F24Rik|AI451892|AU017229	trafficking protein particle complex 13	protein-coding	1.5	6.0	18.5	21.5	32.5	44.5
Merged-chr5-110787858-2	chr5	110787358	110788358	+	623.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009469, exon 24 of 28)	exon (NM_009469, exon 24 of 28)	-7243.0	NM_001025562	56361.0	Mm.23528	NM_019700	ENSMUSG00000029507	Pus1	A730013B20Rik|MPUS1|mPus1p	pseudouridine synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36031050-2	chr18	36030550	36031550	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167891, intron 5 of 9)	intron (NM_001167891, intron 5 of 9)	66220.0	NR_110349	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-85128784-2	chr10	85128284	85129284	+	623.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028832)	promoter-TSS (NM_028832)	-757.0	NM_028832	74238.0	Mm.255401	NM_028832	ENSMUSG00000049038	Mterf2	1700007D05Rik|Mterfd3	mitochondrial transcription termination factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80164647-2	chr12	80164147	80165147	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-31803.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-178335269-1	chr1	178334769	178335769	+	623.5	f0_balb.idr	intron (NR_149827, intron 3 of 16)	intron (NR_149827, intron 3 of 16)	2546.0	NM_016805	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165757311-2	chr1	165756811	165757811	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-6447.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142460474-2	chr5	142459974	142460974	+	623.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_199068, exon 9 of 9)	3' UTR (NM_199068, exon 9 of 9)	-3457.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65034098-2	chr9	65033598	65034598	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028906, intron 1 of 20)	intron (NM_028906, intron 1 of 20)	1640.0	NM_028906	74388.0	Mm.202749	NM_028906	ENSMUSG00000032393	Dpp8	2310004I03Rik|4932434F09Rik|AI666706|DPP VIII	dipeptidylpeptidase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120854083-2	chr4	120853583	120854583	+	623.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182929)	promoter-TSS (NM_182929)	-716.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	1.0	4.5	0.0	6.5	8.0	0.0
Merged-chr6-31168838-2	chr6	31168338	31169338	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	49636.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-33820932-2	chr18	33820432	33821432	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013512, intron 18 of 23)	Lx8|LINE|L1	26040.0	NR_038151	69749.0	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34912360-2	chr6	34911860	34912860	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1529.0	NM_001013366	101240.0	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-75986699-2	chr16	75986199	75987199	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14085.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-10239971-2	chr3	10239471	10240471	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14254.0	NM_001357161	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35037091-2	chr12	35036591	35037591	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	-10098.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	22.5	46.0	24.0	27.5	49.5	34.5
Merged-chr12-108672543-2	chr12	108672043	108673043	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 4 of 14)	intron (NM_001163396, intron 4 of 14)	13923.0	NR_029771	723909.0		NR_029771	ENSMUSG00000065436	Mir342	Mirn342|mmu-mir-342	microRNA 342	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147522306-2	chr4	147521806	147522806	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30971.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-59420520-2	chr1	59420019	59421019	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-61628.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	0.0	7.0	0.5	0.0	0.5	0.5
Merged-chr11-96304259-2	chr11	96303759	96304759	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008268, intron 1 of 1)	intron (NM_008268, intron 1 of 1)	747.0	NM_008268	15413.0	Mm.207	NM_008268	ENSMUSG00000038700	Hoxb5	AI385717|Hox-2.1	homeobox B5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32162353-2	chr11	32161853	32162853	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37926.0	NM_001134458	16199.0	Mm.384	NM_008374	ENSMUSG00000020279	Il9r	-	interleukin 9 receptor	protein-coding	3.0	0.0	3.5	0.0	1.0	1.0
Merged-chr6-17642410-2	chr6	17641910	17642910	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007604, intron 1 of 9)	intron (NM_007604, intron 1 of 9)	5400.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	12.0	3.0	8.5	4.5	22.5	5.5
Merged-chr11-116441237-2	chr11	116440737	116441737	+	623.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033267)	TTS (NM_001033267)	7024.0	NR_003376	664849.0	Mm.258466	NR_003376		Gm7367	EG664849	1110014K08Rik pseudogene	pseudo	0.0	0.0	0.0	0.0	1.0	0.5
Merged-chr2-61586592-2	chr2	61586092	61587092	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011529, intron 1 of 7)	B3|SINE|B2	-6505.0	NR_149324	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127586952-2	chr7	127586452	127587452	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033040, intron 2 of 8)	intron (NM_001033040, intron 2 of 8)	1643.0	NM_001033040	233899.0	Mm.25220	NM_001033040	ENSMUSG00000057176	Ccdc189	Gm166	coiled-coil domain containing 189	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142786770-2	chr5	142786270	142787270	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178242, intron 4 of 15)	intron (NM_178242, intron 4 of 15)	30617.0	NM_178242	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-94791562-2	chr12	94791062	94792062	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	864224.0	NR_106175	102465890.0		NR_106175	ENSMUSG00000098498	Mir8099-1	Gm27917|mmu-mir-8099-1	microRNA 8099-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89715855-2	chr3	89715355	89716355	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357958, intron 1 of 14)	intron (NM_001357958, intron 1 of 14)	617.0	NM_001357958	56417.0	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|DRADA|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	0.0	2.5	2.0	0.0	6.0	1.0
Merged-chr6-29396667-3	chr6	29396142	29397142	+	623.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347072)	promoter-TSS (NM_001347072)	58.0	NM_001347073	232664.0	Mm.251303	NM_145574	ENSMUSG00000029769	Ccdc136	4921511K06Rik|BC006583	coiled-coil domain containing 136	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131353606-4	chr2	131353108	131354108	+	623.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178607)	promoter-TSS (NM_178607)	-716.0	NM_178607	51902.0	Mm.477523	NM_178607	ENSMUSG00000048911	Rnf24	2810473M14Rik|4930505A13Rik|AI317164|C86507|D2Ertd504e	ring finger protein 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119676510-3	chr8	119675978	119676978	+	623.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023395, intron 1 of 6)	intron (NM_023395, intron 1 of 6)	10113.0	NM_023395	67866.0	Mm.87599	NM_023395	ENSMUSG00000023336	Wfdc1	2310058A03Rik|ps20	WAP four-disulfide core domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36476125-2	chr16	36475625	36476625	+	623.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-20733.0	NM_025288	20863.0	Mm.136573	NM_025288	ENSMUSG00000054905	Stfa3	Stf3	stefin A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126758878-2	chr7	126758378	126759378	+	623.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011952)	promoter-TSS (NM_011952)	-748.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-53721814-3	chr6	53721319	53722319	+	623.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99006.0	NM_025817	66873.0	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27657034-3	chr2	27656533	27657533	+	623.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20168.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92442528-3	chr5	92441937	92442937	+	623.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007644, exon 12 of 12)	3' UTR (NM_007644, exon 12 of 12)	-7238.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-69125459-3	chr9	69124968	69125968	+	623.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013646, intron 1 of 10)	intron (NM_013646, intron 1 of 10)	-164373.0	NM_001289916	19883.0	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	2.0	0.0	0.0	2.0	0.0	1.5
Merged-chr15-99670692-3	chr15	99670178	99671178	+	623.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009597, exon 1 of 12)	5' UTR (NM_009597, exon 1 of 12)	301.0	NM_009597	11419.0	Mm.440107	NM_009597	ENSMUSG00000023017	Asic1	AI843610|ASIC|ASIC1a|Accn2|B530003N02Rik|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-28457634-3	chr13	28457134	28458134	+	623.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	253239.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-126576176-3	chr3	126575675	126576675	+	623.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-20776.0	NM_001346636	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	5.0	4.5	3.0	8.0	7.0	2.5
Merged-chr10-94586779-2	chr10	94586279	94587279	+	623.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106070)	promoter-TSS (NR_106070)	-580.0	NR_106070	102466817.0		NR_106070	ENSMUSG00000098544	Mir7211	Gm27536|mmu-mir-7211	microRNA 7211	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44511384-2	chr19	44510880	44511880	+	623.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011720, intron 5 of 5)	intron (NM_011720, intron 5 of 5)	17908.0	NM_011720	22423.0	Mm.88365	NM_011720	ENSMUSG00000036961	Wnt8b	-	wingless-type MMTV integration site family, member 8B	protein-coding	7.5	0.5	4.0	0.0	5.5	2.0
Merged-chr2-57112390-2	chr2	57111890	57112890	+	623.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_013613, exon 3 of 8)	exon (NM_013613, exon 3 of 8)	2648.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-113756209-2	chr9	113755709	113756709	+	623.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114347, intron 1 of 39)	intron (NM_001114347, intron 1 of 39)	14736.0	NM_001114347	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	8.5	20.0	5.0	4.5	5.0	7.0
Merged-chr15-102075274-2	chr15	102074774	102075774	+	623.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_145625, intron 1 of 14)	intron (NM_145625, intron 1 of 14)	1501.0	NM_145625	75705.0	Mm.290022	NM_145625	ENSMUSG00000058655	Eif4b	2310046H11Rik|AL024095|C85189|Eif4a2	eukaryotic translation initiation factor 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56615545-2	chr17	56615045	56616045	+	623.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_028782, exon 14 of 18)	exon (NM_028782, exon 14 of 18)	2150.0	NM_018730	54217.0	Mm.11376	NM_018730	ENSMUSG00000057863	Rpl36	-	ribosomal protein L36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48408080-2	chr17	48407580	48408580	+	623.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110832, intron 1 of 9)	intron (NM_001110832, intron 1 of 9)	1740.0	NM_001110832	18044.0	Mm.4929	NM_010913	ENSMUSG00000023994	Nfya	AA407810|Cbf-b|SEZ-10|SEZ10	nuclear transcription factor-Y alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117305309-2	chr5	117304836	117305836	+	623.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-13930.0	NM_001033311	231668.0	Mm.298603	NM_001033311	ENSMUSG00000066894	Vsig10	-	V-set and immunoglobulin domain containing 10	protein-coding	0.0	0.0	0.0	0.0	6.5	0.0
Merged-chr18-25554877-3	chr18	25554375	25555375	+	623.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362322, intron 2 of 12)	intron (NM_001362322, intron 2 of 12)	124873.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32213662-2	chr4	32213162	32214162	+	623.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-203773.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	12.5	0.0	13.5	8.0	0.0	11.5
Merged-chr7-98963495-2	chr7	98962995	98963995	+	623.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 12 of 14)	intron (NM_178635, intron 12 of 14)	124650.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-13073811-2	chr6	13073311	13074311	+	623.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_027992, intron 3 of 8)	L2|LINE|L2	4052.0	NM_027992	71900.0	Mm.27742	NM_027992	ENSMUSG00000029571	Tmem106b	2310036D22Rik|5830455K21Rik|6430519M21Rik|AI428776|AI661344	transmembrane protein 106B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-140531727-3	chr1	140531243	140532243	+	623.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081027, intron 20 of 27)	intron (NM_001081027, intron 20 of 27)	124659.0	NR_040604	75910.0	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55801505-2	chr19	55801005	55802005	+	623.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	59695.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-70414917-4	chr16	70414421	70415421	+	623.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 3 of 15)	MER34A|LTR|ERV1	100972.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	1.0	17.0	14.0	8.0	10.5	11.0
Merged-chr11-23496680-2	chr11	23496180	23497180	+	623.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_172391, intron 2 of 8)	intron (NM_172391, intron 2 of 8)	1359.0	NM_001290655	268390.0	Mm.13148	NM_172391	ENSMUSG00000020288	Ahsa2	-	AHA1, activator of heat shock protein ATPase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-56200843-3	chr9	56200341	56201341	+	623.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172924)	TTS (NM_172924)	-39771.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166079043-2	chr2	166078543	166079543	+	623.041626	f1_balb.idr|f1_c57bl6.idr	exon (NM_028072, exon 17 of 21)	exon (NM_028072, exon 17 of 21)	76242.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.0	2.0	0.0	0.0	1.5	0.0
Merged-chr19-46514870-2	chr19	46514370	46515370	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 5 of 5)	MIRb|SINE|MIR	13222.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	5.5	3.0	2.5	1.5	0.0
Merged-chr8-61522308-2	chr8	61521808	61522808	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 18 of 21)	intron (NM_001293772, intron 18 of 21)	34574.0	NM_145595	234309.0	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81441301-2	chr10	81440801	81441801	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14128.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53248834-2	chr18	53248359	53249359	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	3197.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	7.5	38.5	22.0	10.5	27.5	9.0
Merged-chr12-108630579-2	chr12	108630079	108631079	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163395, intron 1 of 12)	intron (NM_001163395, intron 1 of 12)	-5174.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20038013-1	chr13	20037513	20038513	+	623.0	f1_balb.idr	Intergenic	Intergenic	-52494.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.0	13.5	0.5	4.5	1.0	2.0
Merged-chr1-152626411-2	chr1	152625911	152626911	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346118, intron 2 of 18)	intron (NM_001346118, intron 2 of 18)	-1194.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-24953839-1	chr19	24953339	24954339	+	623.0	f0_c57.idr	intron (NM_146097, intron 3 of 14)	intron (NM_146097, intron 3 of 14)	7777.0	NR_033744	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	19.5	53.5	16.5	3.5	10.5	9.5
Merged-chr5-125067323-1	chr5	125066823	125067823	+	623.0	f0_balb.idr	intron (NM_011424, intron 16 of 46)	intron (NM_011424, intron 16 of 46)	63848.0	NM_028443	73121.0	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140390990-3	chr5	140390479	140391479	+	623.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-1671.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71056666-2	chr17	71056166	71057166	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083934, intron 10 of 36)	L1M4|LINE|L1	37109.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96389315-2	chr9	96388815	96389815	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-24884.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0.0	2.0	1.0	2.0	0.0	2.0
Merged-chr3-144567966-2	chr3	144567466	144568466	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355234, intron 1 of 6)	intron (NM_001355234, intron 1 of 6)	2250.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118814408-2	chr10	118813908	118814908	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	54495.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153333214-2	chr2	153332714	153333714	+	623.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008444, exon 9 of 9)	3' UTR (NM_008444, exon 9 of 9)	12596.0	NR_040318	72326.0	Mm.400102	NR_040318	ENSMUSG00000073236	2500004C02Rik	-	RIKEN cDNA 2500004C02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45035755-2	chr14	45035255	45036255	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	47644.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140602449-2	chr5	140601949	140602949	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-4892.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98815989-2	chr11	98815489	98816489	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138660, intron 3 of 13)	B1_Mus1|SINE|Alu	-5900.0	NR_033551	100037262.0	Mm.442062	NR_033551	ENSMUSG00000075576	Gm12359	-	predicted gene 12359	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-73041599-1	chr16	73041099	73042099	+	623.0	f1_balb.idr	intron (NM_019413, intron 27 of 28)	RMER6C|LTR|ERVK	378450.0	NM_019413	19876.0	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.0	0.0	1.5	0.0	0.0	0.5
Merged-chr17-46933845-2	chr17	46933345	46934345	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146078, intron 45 of 46)	intron (NM_146078, intron 45 of 46)	23360.0	NM_008938	19133.0	Mm.291370	NM_008938	ENSMUSG00000023978	Prph2	AOFMD|AVMD|Nmf193|PRPH|RP7|Rd-2|Rd2|Rds|Tspan22|rds	peripherin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50056618-1	chr14	50056118	50057118	+	623.0	f0_c57.idr	Intergenic	(GAA)n|Simple_repeat|Simple_repeat	-21118.0	NM_146317	258314.0	Mm.223011	NM_146317	ENSMUSG00000068437	Olfr725	MOR246-3|MOR246-7_p	olfactory receptor 725	protein-coding	0.5	0.5	11.5	1.0	0.5	0.5
Merged-chr9-26207215-2	chr9	26206715	26207715	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-526593.0	NM_001310766	76898.0	Mm.218788	NM_029792	ENSMUSG00000045994	B3gat1	0710007K08Rik|AI846286|GlcAT-P|Glcatp|Hnk1	beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-28899723-2	chr6	28899223	28900223	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67976.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-40742217-1	chr13	40741717	40742717	+	623.0	f1_c57bl6.idr	Intergenic	Intergenic	-7297.0	NM_001301674	21418.0	Mm.85544	NM_011547	ENSMUSG00000021359	Tfap2a	AP-2|AP2alpha|Ap-2 (a)|Ap2|Ap2tf|Tcfap2a	transcription factor AP-2, alpha	protein-coding	0.0	0.0	0.5	0.0	1.0	0.5
Merged-chr13-74591546-1	chr13	74591046	74592046	+	623.0	f1_balb.idr	Intergenic	Intergenic	-48307.0	NM_030711	80898.0	Mm.83526	NM_030711	ENSMUSG00000021583	Erap1	A-LAP|ARTS-1|Arts1|ERAAP|PILSA|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127475492-2	chr7	127474992	127475992	+	623.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145589, exon 7 of 11)	exon (NM_145589, exon 7 of 11)	3878.0	NM_145589	233895.0	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118702414-2	chr2	118701914	118702914	+	623.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081971, exon 1 of 1)	exon (NM_001081971, exon 1 of 1)	1549.0	NM_001081971	383787.0	Mm.35758	NM_001081971	ENSMUSG00000078137	Ankrd63	Gm1337	ankyrin repeat domain 63	protein-coding	0.0	0.0	0.0	0.5	0.0	1.0
Merged-chr15-98678535-2	chr15	98678035	98679035	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTA)n|Simple_repeat|Simple_repeat	-1074.0	NM_172612	223881.0	Mm.274010	NM_172612	ENSMUSG00000054855	Rnd1	A830014L09Rik|Arhs	Rho family GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19786007-2	chr7	19785507	19786507	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161844, intron 6 of 10)	intron (NM_001161844, intron 6 of 10)	10802.0	NM_001161844	80794.0	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129372386-2	chr6	129371886	129372886	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13117.0	NM_027709	71183.0	Mm.79402	NM_027709	ENSMUSG00000030158	Clec12b	4933425B16Rik	C-type lectin domain family 12, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-16363947-2	chr14	16363447	16364447	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1259.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64031516-2	chr15	64031016	64032016	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	28248.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100532756-2	chr7	100532256	100533256	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4344.0	NM_183270	68185.0	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87843658-2	chr6	87843158	87844158	+	623.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013493, exon 5 of 5)	3' UTR (NM_013493, exon 5 of 5)	-4899.0	NM_133934	57905.0	Mm.241546	NM_133934	ENSMUSG00000030056	Isy1	5830446M03Rik|AI181014|AU020769	ISY1 splicing factor homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90196606-2	chr16	90196106	90197106	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24136.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121580900-2	chr3	121580400	121581400	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48556.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191439868-1	chr1	191439368	191440368	+	623.0	f0_c57.idr	intron (NR_151615, intron 5 of 5)	MTD|LTR|ERVL-MaLR	25180.0	NR_151615	102634668.0		NR_151615		Gm32200	-	predicted gene, 32200	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-113655674-1	chr8	113655174	113656174	+	623.0	f1_c57bl6.idr	TTS (NM_001048145)	TTS (NM_001048145)	12461.0	NM_001048145	668110.0	Mm.390078	NM_029139	ENSMUSG00000033409	Syce1l	4930481F22Rik|MMRP|PSESS|mmrp2	synaptonemal complex central element protein 1 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52566345-2	chr13	52565845	52566845	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6880.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104430311-2	chr3	104429811	104430811	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81607.0	NM_001025067	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	2.5	0.0	0.0	0.0	8.0	11.5
Merged-chr6-119476815-2	chr6	119476315	119477315	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009525, intron 1 of 4)	YREP_Mm|Unknown|Unknown	-2853.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87375955-1	chr3	87375455	87376455	+	623.0	f1_balb.idr	promoter-TSS (NM_001310545)	promoter-TSS (NM_001310545)	-432.0	NM_001310545	229499.0	Mm.255203	NM_153090	ENSMUSG00000059994	Fcrl1	A230020G22Rik|Bxmas1|Bxmh1|Bxmh1b|Fcrh1|Fcrh1l|Fcrh1s|Ifgp1	Fc receptor-like 1	protein-coding	25.5	33.0	42.5	14.5	20.0	24.5
Merged-chr2-118701754-1	chr2	118701254	118702254	+	623.0	f1_balb.idr	3' UTR (NM_001081971, exon 1 of 1)	3' UTR (NM_001081971, exon 1 of 1)	2209.0	NM_001081971	383787.0	Mm.35758	NM_001081971	ENSMUSG00000078137	Ankrd63	Gm1337	ankyrin repeat domain 63	protein-coding	5.0	1.0	0.5	0.5	1.0	0.0
Merged-chr3-151009038-2	chr3	151008538	151009538	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	14824.0	NR_039540	100628568.0		NR_039540	ENSMUSG00000092830	Mir3963	mmu-mir-3963|mu-mir-3963	microRNA 3963	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107733686-2	chr9	107733186	107734186	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23211.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-72366998-1	chr4	72366498	72367498	+	623.0	f0_balb.idr	Intergenic	MLT2B3|LTR|ERVL	165754.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139268512-2	chr5	139268012	139269012	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359238, intron 8 of 8)	intron (NM_001359238, intron 8 of 8)	15015.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121592891-2	chr10	121592390	121593390	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359618, intron 24 of 24)	intron (NM_001359618, intron 24 of 24)	-6096.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	4.0	0.0	7.0	3.0	3.5	6.5
Merged-chr1-149959364-2	chr1	149958864	149959864	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	1926.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-117828487-3	chr6	117827957	117828957	+	623.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12724.0	NM_001346649	232337.0	Mm.290847	NM_177684	ENSMUSG00000059689	Zfp637	AI646709|BC021601|Znf32	zinc finger protein 637	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25122417-2	chr7	25121917	25122917	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163556, intron 1 of 13)	intron (NM_001163556, intron 1 of 13)	10043.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-81039035-2	chr3	81038535	81039535	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	2619.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	12.0	16.0	5.5	14.0	12.0	10.0
Merged-chr17-27839280-1	chr17	27838780	27839780	+	623.0	f1_balb.idr	promoter-TSS (NM_011432)	promoter-TSS (NM_011432)	-807.0	NM_011432	20630.0	Mm.103949	NM_011432	ENSMUSG00000024217	Snrpc	Snrp1c|U1-C|U1C	U1 small nuclear ribonucleoprotein C	protein-coding	9.5	16.0	8.5	15.0	26.5	23.0
Merged-chr3-89354164-2	chr3	89353664	89354664	+	623.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029974, exon 10 of 16)	exon (NM_029974, exon 10 of 16)	-4136.0	NM_009614	11490.0	Mm.274049	NM_009614	ENSMUSG00000028041	Adam15	AD56|MDC15	a disintegrin and metallopeptidase domain 15 (metargidin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70084929-2	chr8	70084429	70085429	+	623.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177900, exon 3 of 5)	exon (NM_177900, exon 3 of 5)	1400.0	NM_177900	330790.0	Mm.152048	NM_177900	ENSMUSG00000007594	Hapln4	9330174O11|Bral2|Lpr4	hyaluronan and proteoglycan link protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133412468-2	chr4	133411948	133412948	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016981, intron 2 of 11)	intron (NM_016981, intron 2 of 11)	42672.0	NR_039582	100628620.0		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	21.0	13.0	23.0	52.5	31.0	78.5
Merged-chr6-97412689-2	chr6	97412153	97413153	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 4 of 23)	L1MC|LINE|L1	46633.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153931415-1	chr1	153930915	153931915	+	623.0	f0_balb.idr	Intergenic	Lx7|LINE|L1	31486.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79339951-2	chr15	79339449	79340449	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6672.0	NM_001304830	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr10-68210254-1	chr10	68209754	68210754	+	623.0	f1_balb.idr	intron (NM_023598, intron 3 of 9)	intron (NM_023598, intron 3 of 9)	68472.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.0	1.5	2.0	3.0	5.0	2.0
Merged-chr6-71627426-2	chr6	71626926	71627926	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362200, intron 2 of 25)	B4A|SINE|B4	5260.0	NM_173001	104263.0	Mm.260479	NM_173001	ENSMUSG00000053470	Kdm3a	1700105C21Rik|C230043E16Rik|JHDM2a|Jmjd1|Jmjd1a|KDM2A|TGSA|Tsga	lysine (K)-specific demethylase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86191009-3	chr1	86190527	86191527	+	623.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001310702, exon 12 of 25)	exon (NM_001310702, exon 12 of 25)	36247.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77466162-2	chr11	77465662	77466662	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139129, intron 2 of 8)	intron (NM_139129, intron 2 of 8)	2249.0	NM_139130	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88393749-2	chr3	88393249	88394249	+	623.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025928)	TTS (NM_025928)	-9283.0	NM_007541	12096.0	Mm.389459	NM_007541	ENSMUSG00000074483	Bglap	BGP|Bglap1|OC|OG1|mOC-A	bone gamma carboxyglutamate protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121598303-1	chr9	121597803	121598803	+	623.0	f1_c57bl6.idr	intron (NR_040740, intron 1 of 3)	intron (NR_040740, intron 1 of 3)	11283.0	NR_040740	75384.0	Mm.445955	NR_040740	ENSMUSG00000084995	Lyzl4os	4930589B17Rik|4930596M17Rik	lysozyme-like 4, opposite strand	ncRNA	4.0	7.0	5.0	2.0	2.0	6.0
Merged-chr13-95489123-1	chr13	95488623	95489623	+	623.0	f0_c57.idr	Intergenic	L4_B_Mam|LINE|RTE-X	-10468.0	NM_001081159	268686.0	Mm.291249	NM_001081159	ENSMUSG00000021679	S100z	Gm625	S100 calcium binding protein, zeta	protein-coding	0.5	7.5	1.5	0.0	0.0	2.0
Merged-chr18-62112408-1	chr18	62111908	62112908	+	623.0	f1_balb.idr	Intergenic	Intergenic	67573.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	1.5	3.5	0.0	0.0	0.0	1.0
Merged-chr16-11005637-1	chr16	11005137	11006137	+	623.0	f0_balb.idr	Intergenic	B3|SINE|B2	-3261.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-82959362-1	chr10	82958862	82959862	+	623.0	f1_balb.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-26135.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	4.5	19.0	7.5	9.5	18.5	13.5
Merged-chr9-120501505-2	chr9	120501005	120502005	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8899.0	NM_026892	68969.0	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85393183-2	chr12	85392683	85393683	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-18466.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44411694-2	chr19	44411194	44412194	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-3985.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-82869478-2	chr7	82868978	82869978	+	623.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175366, exon 2 of 2)	exon (NM_175366, exon 2 of 2)	2145.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33185870-1	chr16	33185370	33186370	+	623.0	f0_balb.idr	exon (NM_176840, exon 1 of 13)	exon (NM_176840, exon 1 of 13)	799.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96905781-2	chr3	96905281	96906281	+	623.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026229)	promoter-TSS (NM_026229)	-483.0	NM_026229	67549.0	Mm.46722	NM_026229	ENSMUSG00000028096	Gpr89	4933412D19Rik|Gpr89a|SH120	G protein-coupled receptor 89	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-13680783-2	chr17	13680283	13681283	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79758.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	3.0	2.5	0.0	3.0	0.0	1.0
Merged-chr19-31763467-2	chr19	31762967	31763967	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013833, intron 1 of 17)	intron (NM_001013833, intron 1 of 17)	1566.0	NM_001013833	19091.0	Mm.381170	NM_011160	ENSMUSG00000052920	Prkg1	AW125416|CGKI|Gm19690|Prkg1b|Prkgr1b	protein kinase, cGMP-dependent, type I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95908158-2	chr8	95907658	95908658	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19793.0	NM_010325	14719.0	Mm.230169	NM_010325	ENSMUSG00000031672	Got2	AL022787|FABP-pm|Got-2|Kyat4|mAspAT	glutamatic-oxaloacetic transaminase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79950287-1	chr15	79949787	79950787	+	623.0	f1_balb.idr	Intergenic	Intergenic	-17641.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	0.0	3.5	1.0	0.0	1.5	0.5
Merged-chr15-55970257-2	chr15	55969757	55970757	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63308.0	NM_016667	20649.0	Mm.309425	NM_016667	ENSMUSG00000060429	Sntb1	-	syntrophin, basic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44839889-2	chr7	44839389	44840389	+	623.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001042655)	TTS (NM_001042655)	3601.0	NM_010215	14204.0	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	3.0	0.0	0.0	1.0	0.0	0.5
Merged-chr12-100838719-2	chr12	100838219	100839219	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145448, intron 4 of 12)	intron (NM_145448, intron 4 of 12)	59662.0	NM_145448	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27582011-2	chr3	27581511	27582511	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 4 of 26)	intron (NM_001356953, intron 4 of 26)	2984.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25758825-2	chr15	25758325	25759325	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001353142, intron 1 of 20)	intron (NM_001353142, intron 1 of 20)	5619.0	NM_001353142	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11103095-2	chr8	11102595	11103595	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94665.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32238699-1	chr12	32238199	32239199	+	623.0	f1_c57bl6.idr	Intergenic	Intergenic	-30050.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	16.5	1.5	8.0	13.0	1.0	2.0
Merged-chr13-98241860-2	chr13	98241360	98242360	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	21132.0	NM_178918	105372.0	Mm.28221	NM_178918	ENSMUSG00000041747	Utp15	AW544865	UTP15 small subunit processome component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106999251-2	chr8	106998751	106999751	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009229, intron 4 of 6)	intron (NM_009229, intron 4 of 6)	-32075.0	NM_126165	116733.0	Mm.236004	NM_126165	ENSMUSG00000031913	Vps4a	4930589C15Rik|AI325971|AW553189	vacuolar protein sorting 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101046461-2	chr15	101045961	101046961	+	623.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011323)	TTS (NM_011323)	7938.0	NM_001214911	668225.0	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	0.0	1.5	2.5	0.0	0.0	0.0
Merged-chr5-125172987-2	chr5	125172487	125173487	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253905, intron 1 of 42)	intron (NM_001253905, intron 1 of 42)	6227.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	9.5	14.5	6.0	7.5	8.0	1.5
Merged-chr2-167983436-2	chr2	167982936	167983936	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080708, intron 18 of 21)	PB1D7|SINE|Alu	27157.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-15497043-2	chr15	15496543	15497543	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1281058.0	NM_009869	12565.0	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-150899227-1	chr5	150898727	150899727	+	623.0	f1_balb.idr	Intergenic	Intergenic	-53380.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-35691536-2	chr5	35691036	35692036	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11756.0	NM_030127	78558.0	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-131391893-2	chr7	131391393	131392393	+	623.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175115, exon 4 of 4)	exon (NM_175115, exon 4 of 4)	18585.0	NM_175115	67143.0	Mm.334273	NM_175115	ENSMUSG00000040167	Ikzf5	2610034F18Rik|PEGASUS|Zfpn1a5	IKAROS family zinc finger 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-113766181-2	chr7	113765681	113766681	+	623.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145584, exon 1 of 16)	5' UTR (NM_145584, exon 1 of 16)	183.0	NM_145584	233744.0	Mm.334160	NM_145584	ENSMUSG00000038156	Spon1	AI666765|AW455831|BC020531|D330035F22Rik|FSP	spondin 1, (f-spondin) extracellular matrix protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30949489-2	chr16	30949036	30950036	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131896.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	1.5	2.0	1.5	1.0	4.5	1.0
Merged-chr14-58071169-4	chr14	58070615	58071615	+	622.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1571.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62483686-2	chr10	62483186	62484186	+	622.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358543, intron 1 of 7)	intron (NM_001358543, intron 1 of 7)	2912.0	NM_001113355	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148831880-2	chr5	148831380	148832380	+	622.849976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53917.0	NR_131106	78015.0	Mm.243839	NR_131106	ENSMUSG00000085740	4930505K14Rik	-	RIKEN cDNA 4930505K14 gene	ncRNA	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr8-70810464-2	chr8	70809964	70810964	+	622.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_008353, intron 2 of 15)	intron (NM_008353, intron 2 of 15)	2015.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	1.0	0.0	0.0	2.0	1.0	1.5
Merged-chr4-123687690-2	chr4	123687152	123688152	+	622.799988	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-3292.0	NM_001199136	11426.0	Mm.402299	NM_009600	ENSMUSG00000028649	Macf1	ABP620|Acf7|Aclp7|MACF|R74989|mKIAA0465	microtubule-actin crosslinking factor 1	protein-coding	1.5	0.0	1.0	0.0	6.0	0.0
Merged-chr3-95493927-3	chr3	95493382	95494382	+	622.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037737, intron 20 of 21)	intron (NM_001037737, intron 20 of 21)	-5328.0	NM_007802	13038.0	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103481109-2	chr14	103480609	103481609	+	622.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E1|LTR|ERVL-MaLR	-32232.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97333576-2	chr7	97333078	97334078	+	622.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039039, intron 1 of 1)	intron (NM_001039039, intron 1 of 1)	1255.0	NM_001039039	622320.0	Mm.334029	NM_001039039	ENSMUSG00000044952	Kctd21	EG622320	potassium channel tetramerisation domain containing 21	protein-coding	5.0	5.5	4.5	16.0	12.5	11.5
Merged-chr1-139443200-2	chr1	139442700	139443700	+	622.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172643, intron 10 of 10)	B2_Mm1a|SINE|B2	-11573.0	NM_009791	12316.0	Mm.168523	NM_009791	ENSMUSG00000033952	Aspm	Calmbp1|D330028K02Rik|MCPH5|Sha1	abnormal spindle microtubule assembly	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-82155590-2	chr17	82155090	82156090	+	622.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-417203.0	NM_011406	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-53706673-2	chr1	53706174	53707174	+	622.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252070, intron 1 of 65)	CpG	110.0	NM_001252070	627872.0	Mm.184692	NM_001252070	ENSMUSG00000096141	Dnah7a	Dnahc7|Dnahc7a|Gm992	dynein, axonemal, heavy chain 7A	protein-coding	3.0	0.0	0.0	3.0	0.0	0.0
Merged-chr16-76366969-2	chr16	76366469	76367469	+	622.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	6080.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77492567-2	chr11	77492067	77493067	+	622.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004144)	promoter-TSS (NM_001004144)	-845.0	NM_001004144	216963.0	Mm.290182	NM_001004144	ENSMUSG00000011877	Git1	Cat-1|p95Cat	G protein-coupled receptor kinase-interactor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8808030-2	chr10	8807571	8808571	+	622.75	f0_balb.idr|f1_balb.idr	intron (NM_175155, intron 4 of 19)	intron (NM_175155, intron 4 of 19)	77999.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.0	8.5	13.0	10.0	27.5	5.0
Merged-chr3-101006443-3	chr3	101005920	101006920	+	622.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167906, intron 7 of 8)	MTEa|LTR|ERVL-MaLR	23075.0	NM_001167906	630146.0	Mm.190915	NM_001099332	ENSMUSG00000086564	Cd101	EWI-101|Gm1016|Gm734|Igsf2	CD101 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44487460-3	chr19	44486944	44487944	+	622.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-6028.0	NM_011720	22423.0	Mm.88365	NM_011720	ENSMUSG00000036961	Wnt8b	-	wingless-type MMTV integration site family, member 8B	protein-coding	0.0	1.0	3.5	0.0	0.0	0.0
Merged-chr3-142630603-1	chr3	142630103	142631103	+	622.666687	f0_balb.idr	exon (NM_010260, exon 6 of 11)	exon (NM_010260, exon 6 of 11)	-6657.0	NR_105802	102465200.0		NR_105802	ENSMUSG00000098871	Mir6381	Gm27963|mmu-mir-6381	microRNA 6381	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22470362-3	chr16	22469820	22470820	+	622.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346673, intron 23 of 23)	intron (NM_001346673, intron 23 of 23)	-30750.0	NM_023794	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51915449-2	chr3	51914949	51915949	+	622.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	189557.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11836931-3	chr11	11836485	11837485	+	622.666687	f0_balb.idr|f1_balb.idr	intron (NM_016672, intron 8 of 14)	intron (NM_016672, intron 8 of 14)	-28023.0	NM_001163360	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	5.0	1.5	1.5	10.0	4.0	3.0
Merged-chr16-33155240-2	chr16	33154740	33155740	+	622.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-29831.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59291571-2	chr10	59291071	59292071	+	622.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31725.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136428020-2	chr5	136427520	136428520	+	622.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291238, intron 2 of 22)	intron (NM_001291238, intron 2 of 22)	-52217.0	NR_030500	723975.0		NR_030500	ENSMUSG00000106479	Mir721	Mirn721|miRY|mir-721|mmu-mir-721	microRNA 721	ncRNA	9.0	8.0	14.5	0.0	8.0	18.0
Merged-chr8-111257329-2	chr8	111256829	111257829	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 1 of 25)	intron (NM_009149, intron 1 of 25)	1873.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-41083247-2	chr2	41082747	41083747	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053011, intron 41 of 90)	Lx2B2|LINE|L1	1364321.0	NR_105754	102465171.0		NR_105754	ENSMUSG00000098660	Mir6336	Gm27584|mmu-mir-6336	microRNA 6336	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-41629662-2	chr7	41629162	41630162	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-3869.0	NM_001360675	67607.0	Mm.384626	NM_023363	ENSMUSG00000074165	Zfp788	2810426N06Rik|AI256342|AI605193	zinc finger protein 788	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-99235375-2	chr4	99234877	99235877	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175029, intron 10 of 10)	intron (NM_175029, intron 10 of 10)	41230.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	8.0	2.0	4.5	4.5	5.0	1.0
Merged-chr13-59888063-2	chr13	59887563	59888563	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	-64916.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	3.0
Merged-chr16-20630279-2	chr16	20629779	20630779	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177942, intron 1 of 17)	intron (NM_177942, intron 1 of 17)	428.0	NM_139293	107522.0	Mm.263319	NM_139293	ENSMUSG00000022842	Ece2	1810009K13Rik|6330509A19Rik|9630025D12Rik|BB127715|Ece-2|Eef1akmt4-Ece2	endothelin converting enzyme 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-141083890-2	chr5	141083390	141084390	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-83294.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36074981-2	chr1	36074481	36075481	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	6581.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97419486-2	chr6	97418986	97419986	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 4 of 23)	intron (NM_145148, intron 4 of 23)	39800.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58342217-2	chr1	58341717	58342717	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008419, intron 26 of 35)	intron (NM_001008419, intron 26 of 35)	-50919.0	NM_025824	66882.0	Mm.21848	NM_025824	ENSMUSG00000051223	Bzw1	1200015E15Rik|mKIAA0005	basic leucine zipper and W2 domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-119072379-2	chr12	119071879	119072879	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-105958.0	NM_029961	77706.0	Mm.261496	NM_029961	ENSMUSG00000072791	Abcb5	9230106F14Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 5	protein-coding	1.5	0.0	7.0	4.0	0.0	6.5
Merged-chr13-93582667-2	chr13	93582167	93583167	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	55091.0	NM_016668	12116.0	Mm.329582	NM_016668	ENSMUSG00000074768	Bhmt	-	betaine-homocysteine methyltransferase	protein-coding	2.0	1.0	7.5	2.0	1.0	7.5
Merged-chr2-101159503-1	chr2	101159003	101160003	+	622.5	f0_balb.idr	Intergenic	Intergenic	-465245.0	NM_009020	19374.0	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	0.0	0.0	1.0	0.0	0.0	0.5
Merged-chr3-96811420-2	chr3	96810928	96811928	+	622.5	f0_balb.idr|f0_c57.idr	intron (NM_001163497, intron 1 of 3)	ORR1E|LTR|ERVL-MaLR	3093.0	NM_018767	54215.0	Mm.34693	NM_018767	ENSMUSG00000038304	Cd160	AU045688|By55	CD160 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-142202774-2	chr6	142202274	142203274	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F|LINE|L1	-16625.0	NM_023718	28254.0	Mm.38953	NM_023718	ENSMUSG00000079262	Slco1a6	4930422F19Rik|AI790453|Oatp-5|Oatp5|Slc21a13	solute carrier organic anion transporter family, member 1a6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97830911-2	chr6	97830411	97831411	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	23853.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	28.5	69.5	34.0	21.0	62.0	21.5
Merged-chr7-90221742-2	chr7	90221242	90222242	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	43690.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	1.5	2.0	1.0	0.0	1.0	4.5
Merged-chr9-109017719-2	chr9	109017219	109018219	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 9 of 13)	intron (NR_153430, intron 9 of 13)	-20848.0	NM_001284332	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-74984951-2	chr7	74984451	74985451	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45260.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180261625-2	chr1	180261125	180262125	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5325.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58612902-2	chr1	58612402	58613402	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	26505.0	NM_025597	66495.0	Mm.2033	NM_025597	ENSMUSG00000026032	Ndufb3	2700033I16Rik|CI-B12	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-77019709-1	chr16	77019209	77020209	+	622.5	f0_balb.idr	intron (NM_013918, intron 1 of 23)	intron (NM_013918, intron 1 of 23)	5640.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11028001-2	chr16	11027501	11028501	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19103.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80842655-2	chr7	80842155	80843155	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19453.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	1.0	6.0	1.5	1.0	6.0	0.5
Merged-chr7-45468292-2	chr7	45467792	45468792	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-1394.0	NM_007527	12028.0	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-29328036-2	chr10	29327536	29328536	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110195, intron 3 of 5)	MIRb|SINE|MIR	14536.0	NM_025855	52665.0	Mm.28930	NM_025855	ENSMUSG00000019883	Echdc1	1700028A24Rik|AI314462|AI930038|D10Ertd667e|MMCD	enoyl Coenzyme A hydratase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92316400-2	chr16	92315900	92316900	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3934.0	NR_045300	100503166.0	Mm.443304	NR_045300	ENSMUSG00000085637	1700048M11Rik	Gm15980	RIKEN cDNA 1700048M11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-40438819-2	chr6	40438319	40439319	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2684.0	NM_001356375	243780.0	Mm.333006	NM_175528	ENSMUSG00000037172	E330009J07Rik	AI841796|Lchn|mKIAA1147	RIKEN cDNA E330009J07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31709944-2	chr5	31709444	31710444	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181281, intron 2 of 10)	intron (NM_181281, intron 2 of 10)	11894.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-116657431-2	chr8	116656931	116657931	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 1 of 6)	L1ME1|LINE|L1	75560.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50737300-2	chr16	50736799	50737799	+	622.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-4526.0	NR_028300	68190.0	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101963043-2	chr11	101962543	101963543	+	622.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_024449, exon 2 of 2)	3' UTR (NM_024449, exon 2 of 2)	3972.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95242813-2	chr9	95242313	95243313	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	164457.0	NM_018763	54371.0	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140338153-2	chr5	140337653	140338653	+	622.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001356585)	TTS (NM_001356585)	6197.0	NM_001356584	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28362873-2	chr7	28362373	28363373	+	622.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001083912, exon 17 of 19)	exon (NM_001083912, exon 17 of 19)	9789.0	NM_138752	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-58945939-2	chr17	58945439	58946439	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027001, intron 6 of 12)	L1_Mus4|LINE|L1	45436.0	NM_027001	69239.0	Mm.246732	NM_027001	ENSMUSG00000024227	Pdzph1	2610034M16Rik|AV114557	PDZ and pleckstrin homology domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23285198-2	chr16	23284698	23285698	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-5272.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99632268-2	chr12	99631768	99632768	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL-int|LTR|ERVL	-4294.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5324856-2	chr6	5324345	5325345	+	622.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-26472.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	2.0	1.0	1.0	0.0	0.0	0.0
Merged-chr6-51467828-3	chr6	51467269	51468269	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016806, intron 1 of 10)	intron (NM_016806, intron 1 of 10)	2125.0	NR_104468	53379.0	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	6.0	13.0	11.5	5.0	9.0	14.5
Merged-chr1-64534906-2	chr1	64534406	64535406	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037726, intron 1 of 6)	intron (NM_001037726, intron 1 of 6)	2102.0	NM_001037726	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122486323-2	chr6	122485823	122486823	+	622.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027664)	promoter-TSS (NM_027664)	-18.0	NM_027664	108653.0	Mm.277939	NM_027664	ENSMUSG00000040649	Rimklb	4931417E21Rik|4933426K21Rik|AA097693|AI325948|AU015629|Naags	ribosomal modification protein rimK-like family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-54682204-2	chr3	54681704	54682704	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR35B_MM|LTR|ERVL	-10611.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	2.5	13.5	13.5	12.0	14.5	15.5
Merged-chr17-35303974-2	chr17	35303553	35304553	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16494.0	NM_010390	15006.0	Mm.466882	NM_010390	ENSMUSG00000079507	H2-Q1	H-2Q1|Q1|Q1b|Q1d|Q1k|Qa-1|Qa1|Qed-1	histocompatibility 2, Q region locus 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40127045-2	chr10	40126545	40127545	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	15209.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-18287136-2	chr5	18286636	18287636	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010305, intron 5 of 7)	intron (NM_010305, intron 5 of 7)	73277.0	NM_010305	14677.0	Mm.254629	NM_010305	ENSMUSG00000057614	Gnai1	AU046200|Gialpha1|Gnai-1	guanine nucleotide binding protein (G protein), alpha inhibiting 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135477779-2	chr5	135477279	135478279	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	MTEa|LTR|ERVL-MaLR	67343.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79875355-2	chr10	79874855	79875855	+	622.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181681)	promoter-TSS (NM_181681)	-721.0	NR_033210	216152.0	Mm.29678	NM_181681	ENSMUSG00000035835	Plppr3	Lppr3|Prg2	phospholipid phosphatase related 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8302404-2	chr12	8301904	8302904	+	622.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013527)	promoter-TSS (NM_013527)	-450.0	NM_013527	238057.0	Mm.271308	NM_013527	ENSMUSG00000037660	Gdf7	BMP12	growth differentiation factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54667172-2	chr13	54666673	54667673	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20635.0	NM_001146025	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108186454-2	chr6	108185954	108186954	+	622.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145937)	promoter-TSS (NM_145937)	-871.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11132061-2	chr16	11131561	11132561	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029582, intron 1 of 11)	B1_Mur3|SINE|Alu	2471.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128062489-2	chr10	128061989	128062989	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019766, intron 1 of 7)	intron (NM_019766, intron 1 of 7)	3507.0	NM_019766	56351.0	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31322984-2	chr15	31322484	31323484	+	622.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026153)	TTS (NM_026153)	44775.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100125964-2	chr12	100125464	100126464	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290303, intron 13 of 13)	intron (NM_001290303, intron 13 of 13)	13633.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35428281-2	chr17	35427781	35428781	+	622.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023124)	TTS (NM_023124)	3404.0	NM_207648	110557.0	Mm.439827	NM_207648	ENSMUSG00000073409	H2-Q6	0610037M15Rik|H-2Q6|Qa-6|Qa6	histocompatibility 2, Q region locus 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10195601-2	chr17	10195101	10196101	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	123760.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99962482-2	chr7	99961982	99962982	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175388, intron 1 of 5)	intron (NM_175388, intron 1 of 5)	17976.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	9.5	41.0	34.0	23.0	66.5	38.0
Merged-chr8-124346449-2	chr8	124345950	124346950	+	622.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_139272)	TTS (NM_139272)	87486.0	NM_171824	209966.0	Mm.234233	NM_171824	ENSMUSG00000050751	Pgbd5	2900019M05Rik|AI854313	piggyBac transposable element derived 5	protein-coding	1.0	7.0	5.5	4.0	7.0	3.0
Merged-chr10-20656294-2	chr10	20655794	20656794	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 1 of 12)	L1_Mus2|LINE|L1	68784.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116677707-2	chr6	116677207	116678207	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3871.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-17256351-2	chr11	17255851	17256851	+	622.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1196.0	NM_020558	57316.0	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-40728755-2	chr3	40728255	40729255	+	622.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-16858.0	NM_011020	18415.0	Mm.39330	NM_011020	ENSMUSG00000025757	Hspa4l	94kDa|AI461691|APG-1|Osp94	heat shock protein 4 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100113258-2	chr12	100112758	100113758	+	622.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008947, intron 2 of 9)	intron (NM_008947, intron 2 of 9)	927.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126915123-3	chr8	126914623	126915623	+	622.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30798.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-99955742-3	chr13	99955203	99956203	+	622.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030026, intron 13 of 16)	intron (NM_030026, intron 13 of 16)	-55020.0	NM_001081493	27220.0	Mm.75498	NM_013732	ENSMUSG00000021647	Cartpt	Cart	CART prepropeptide	protein-coding	1.5	0.0	2.0	1.0	0.0	7.5
Merged-chr11-100555286-2	chr11	100554786	100555786	+	622.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_028918, intron 7 of 11)	intron (NM_028918, intron 7 of 11)	9654.0	NM_028918	74407.0	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117502320-3	chr8	117501794	117502794	+	622.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 1 of 32)	intron (NM_172285, intron 1 of 32)	4019.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29003611-2	chr2	29003111	29004111	+	622.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166705, intron 1 of 5)	intron (NM_001166705, intron 1 of 5)	51455.0	NM_001166705	329375.0	Mm.425079	NM_001085514	ENSMUSG00000079502	Cfap77	1700101E01Rik|Gm823	cilia and flagella associated protein 77	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-17457423-2	chr14	17456923	17457923	+	622.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-203537.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32458575-2	chr12	32458075	32459075	+	622.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79786.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103717180-2	chr2	103716702	103717702	+	622.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_178890, exon 17 of 17)	exon (NM_178890, exon 17 of 17)	44068.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr16-35754108-4	chr16	35753607	35754607	+	622.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	intron (NM_153550, intron 1 of 8)	15249.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	16.0	28.0	29.0	7.5	35.5	37.0
Merged-chr10-81493336-2	chr10	81492836	81493836	+	622.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_134009, intron 2 of 13)	intron (NM_134009, intron 2 of 13)	3027.0	NM_134009	103425.0	Mm.302791	NM_134009	ENSMUSG00000020238	Ncln	3100002P13Rik|AW120537	nicalin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38945179-3	chr6	38944692	38945692	+	622.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	ORR1E|LTR|ERVL-MaLR	26206.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55317411-2	chr13	55316911	55317911	+	622.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008739, exon 23 of 23)	3' UTR (NM_008739, exon 23 of 23)	4569.0	NM_009000	19336.0	Mm.220923	NM_009000	ENSMUSG00000034789	Rab24	6530406O07Rik	RAB24, member RAS oncogene family	protein-coding	3.0	0.0	2.5	3.0	0.0	1.5
Merged-chr15-34237531-1	chr15	34237031	34238031	+	622.0	f0_balb.idr	promoter-TSS (NM_033521)	promoter-TSS (NM_033521)	-495.0	NM_033521	114128.0	Mm.197518	NM_033521	ENSMUSG00000022257	Laptm4b	C330023P13Rik|LAPTM4beta	lysosomal-associated protein transmembrane 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145250000-1	chr7	145249500	145250500	+	622.0	f1_c57bl6.idr	intron (NR_132644, intron 24 of 24)	intron (NR_132644, intron 24 of 24)	34011.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	0.0	0.5	3.0	0.0	0.5	0.5
Merged-chr3-153960338-2	chr3	153959838	153960838	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-13098.0	NM_001081263	242259.0	Mm.239962	NM_001081263	ENSMUSG00000028360	Slc44a5	AA117069|Gm422	solute carrier family 44, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-131411365-2	chr7	131410865	131411865	+	622.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175115)	promoter-TSS (NM_175115)	764.0	NM_025826	66885.0	Mm.334274	NM_025826	ENSMUSG00000030861	Acadsb	1300003O09Rik|2-MEBCAD|BB066609|SBCAD	acyl-Coenzyme A dehydrogenase, short/branched chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-31525694-2	chr19	31525194	31526194	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013833, intron 2 of 17)	intron (NM_001013833, intron 2 of 17)	138676.0	NM_011160	19091.0	Mm.381170	NM_011160	ENSMUSG00000052920	Prkg1	AW125416|CGKI|Gm19690|Prkg1b|Prkgr1b	protein kinase, cGMP-dependent, type I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54963074-1	chr6	54962574	54963574	+	622.0	f0_c57.idr	intron (NM_172729, intron 1 of 11)	ORR1A4|LTR|ERVL-MaLR	8587.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0.0	2.5	3.5	0.0	0.0	1.0
Merged-chr5-16781114-2	chr5	16780614	16781614	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	227213.0	NM_001289461	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-104937944-2	chr13	104937444	104938444	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74051.0	NM_029984	77803.0	Mm.159995	NM_029984	ENSMUSG00000042655	Fam159b	A930021C24Rik|Shisal2b	family with sequence similarity 159, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58278366-2	chr9	58277866	58278866	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	25202.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42092656-1	chr19	42092156	42093156	+	622.0	f1_c57bl6.idr	intron (NM_145501, intron 1 of 8)	B3|SINE|B2	2221.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	12.5	37.5	35.0	15.5	36.5	21.0
Merged-chr12-116049214-2	chr12	116048714	116049714	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019565, intron 1 of 2)	intron (NM_019565, intron 1 of 2)	1490.0	NM_019565	56220.0	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding	4.0	0.0	2.5	6.5	0.0	1.5
Merged-chr11-24062872-2	chr11	24062372	24063372	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15184.0	NM_016707	14025.0	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103086698-1	chr2	103086198	103087198	+	622.0	f1_balb.idr	intron (NM_001355474, intron 2 of 5)	intron (NM_001355474, intron 2 of 5)	13023.0	NM_019735	56369.0	Mm.24772	NM_019735	ENSMUSG00000010911	Apip	APIP2|CGI-29|Mmrp19	APAF1 interacting protein	protein-coding	2.5	2.5	1.0	0.0	1.0	1.5
Merged-chr19-17393489-1	chr19	17392989	17393989	+	622.0	f0_balb.idr	promoter-TSS (NM_019437)	promoter-TSS (NM_019437)	-554.0	NM_019437	54391.0	Mm.7013	NM_019437	ENSMUSG00000024712	Rfk	0610038L10Rik|AF031381|KOI-4	riboflavin kinase	protein-coding	5.5	4.0	2.0	0.0	5.5	1.0
Merged-chr15-93443188-2	chr15	93442688	93443688	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358750, intron 4 of 6)	B4|SINE|B4	44724.0	NM_001285863	223828.0	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-59214268-2	chr3	59213768	59214768	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 15 of 43)	B4|SINE|B4	-3386.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171210991-1	chr1	171210491	171211491	+	622.0	f0_balb.idr	Intergenic	Intergenic	-2979.0	NM_009803	12355.0	Mm.486506	NM_009803	ENSMUSG00000005677	Nr1i3	AA209988|AI551208|CAR|CAR-beta|Care2|ESTM32|MB67	nuclear receptor subfamily 1, group I, member 3	protein-coding	1.0	7.0	1.5	3.0	1.0	1.0
Merged-chr2-132257357-2	chr2	132256857	132257857	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-4177.0	NM_011045	18538.0	Mm.7141	NM_011045	ENSMUSG00000027342	Pcna	-	proliferating cell nuclear antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-83361397-1	chr18	83360897	83361897	+	622.0	f0_balb.idr	Intergenic	Intergenic	-35513.0	NR_045361	70960.0	Mm.410834	NR_045361		4921531P14Rik	1700108N05Rik	RIKEN cDNA 4921531P14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122908605-2	chr8	122908105	122909105	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_037865, intron 4 of 13)	intron (NR_037865, intron 4 of 13)	60231.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	11.0	0.0	5.0	0.0	0.0	6.0
Merged-chr5-123254919-1	chr5	123254419	123255419	+	622.0	f1_c57bl6.idr	Intergenic	B3A|SINE|B2	26729.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	0.0	0.0	5.0	0.5	7.0	5.0
Merged-chr15-98532551-2	chr15	98532051	98533051	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153345, intron 2 of 10)	intron (NR_153345, intron 2 of 10)	1718.0	NM_001359827	69612.0	Mm.229107	NM_133714	ENSMUSG00000022992	Kansl2	2310037I24Rik|B930009D17	KAT8 regulatory NSL complex subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11479923-2	chr8	11479423	11480423	+	622.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_126558, exon 2 of 2)	non-coding (NR_126558, exon 2 of 2)	-1424.0	NM_011227	19332.0	Mm.37632	NM_011227	ENSMUSG00000031504	Rab20	AA536966|D8Ertd350e	RAB20, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69117302-3	chr3	69116771	69117771	+	622.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008467, intron 1 of 16)	intron (NM_008467, intron 1 of 16)	9821.0	NM_008467	16649.0	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	2.5	10.5	5.0	3.5	8.0	4.5
Merged-chr18-73575826-2	chr18	73575326	73576326	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039214, intron 1 of 1)	intron (NM_001039214, intron 1 of 1)	3121.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99161560-2	chr7	99161060	99162060	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026384, intron 4 of 7)	intron (NM_026384, intron 4 of 7)	-20416.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	2.5	0.0	0.0	0.0	1.0	0.0
Merged-chr6-124415506-1	chr6	124415006	124416006	+	622.0	f0_c57.idr	promoter-TSS (NM_001277330)	promoter-TSS (NM_001277330)	349.0	NM_001360570	19305.0	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1-BP|PTS1R|PXR1P|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-86452637-3	chr10	86452121	86453121	+	622.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013722, intron 2 of 13)	MER91B|DNA|hAT-Tip100	46275.0	NM_001164495	27204.0	Mm.394931	NM_013722	ENSMUSG00000059602	Syn3	-	synapsin III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21211053-1	chr16	21210553	21211553	+	622.0	f0_balb.idr	intron (NM_010143, intron 1 of 15)	intron (NM_010143, intron 1 of 15)	6258.0	NM_010143	13845.0	Mm.6972	NM_010143	ENSMUSG00000005958	Ephb3	AW456895|Cek10|Etk2|HEK2|MDK5|Sek4|Tyro6	Eph receptor B3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83642800-2	chr7	83642300	83643300	+	622.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023377)	TTS (NM_023377)	10783.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	0.0	0.5	1.5	0.0	0.0	0.5
Merged-chr2-30680911-2	chr2	30680411	30681411	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2900.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30965063-2	chr2	30964563	30965563	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144884, intron 2 of 4)	B4|SINE|B4	2855.0	NM_144884	30931.0	Mm.154994	NM_144884	ENSMUSG00000026849	Tor1a	DQ2|Dyt1|torsinA	torsin family 1, member A (torsin A)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-66986922-2	chr16	66986422	66987422	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178721, intron 1 of 9)	intron (NM_178721, intron 1 of 9)	329804.0	NR_040512	75501.0	Mm.394300	NR_040512	ENSMUSG00000092599	1700010K23Rik	-	RIKEN cDNA 1700010K23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-5250429-2	chr16	5249929	5250929	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027446, intron 3 of 7)	intron (NM_027446, intron 3 of 7)	5527.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152108143-2	chr4	152107643	152108643	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285999, intron 13 of 20)	intron (NM_001285999, intron 13 of 20)	-7791.0	NM_001291010	85030.0	Mm.101198	NM_033042	ENSMUSG00000024793	Tnfrsf25	APO-3|DDR3|DR3|LARD|TR3|TRAMP|Tnfrsf12|WSL-1|WSL-LR|Wsl	tumor necrosis factor receptor superfamily, member 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-69942993-2	chr16	69942493	69943493	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-79249.0	NM_173069	224318.0	Mm.212743	NM_173069	ENSMUSG00000063163	Speer2	SPEER-2	spermatogenesis associated glutamate (E)-rich protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126745417-2	chr7	126744917	126745917	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14209.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80036029-2	chr10	80035529	80036529	+	622.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025554)	TTS (NM_025554)	3630.0	NM_025554	66420.0	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20887186-2	chr9	20886686	20887686	+	622.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145610)	promoter-TSS (NM_145610)	-989.0	NM_145610	235036.0	Mm.2930	NM_145610	ENSMUSG00000004100	Ppan	A230087P06Rik|SSF1	peter pan homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4920773-1	chr2	4920273	4921273	+	622.0	f1_balb.idr	intron (NM_010726, intron 1 of 8)	B1_Mus2|SINE|Alu	1777.0	NM_010726	16922.0	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	0.5	7.0	3.5	3.0	1.0	3.0
Merged-chr12-36477691-1	chr12	36477191	36478191	+	622.0	f1_c57bl6.idr	3' UTR (NM_001289504, exon 5 of 5)	3' UTR (NM_001289504, exon 5 of 5)	62075.0	NR_037309	100499526.0		NR_037309	ENSMUSG00000092917	Mir3472	mmu-mir-3472	microRNA 3472	ncRNA	6.0	0.0	3.5	2.0	0.0	0.0
Merged-chr16-21629315-2	chr16	21628815	21629815	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 45 of 46)	Lx9|LINE|L1	65350.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19233595-2	chr7	19233095	19234095	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207525, intron 1 of 1)	intron (NM_207525, intron 1 of 1)	5206.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr2-85561370-2	chr2	85560870	85561870	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17845.0	NM_146437	258429.0	Mm.377497	NM_146437	ENSMUSG00000111179	Olfr996	MOR175-4	olfactory receptor 996	protein-coding	2.0	0.0	3.0	0.0	0.0	1.5
Merged-chr14-25468739-2	chr14	25468239	25469239	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	9554.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr12-57297114-1	chr12	57296614	57297614	+	622.0	f0_balb.idr	intron (NM_001164370, intron 1 of 9)	intron (NM_001164370, intron 1 of 9)	66689.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	0.0	0.0	0.0	1.5	4.5	1.0
Merged-chr15-80171670-2	chr15	80171170	80172170	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2051.0	NM_010795	17309.0	Mm.299693	NM_010795	ENSMUSG00000042428	Mgat3	1110038J12Rik|AI848272|GnT-III	mannoside acetylglucosaminyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67342273-2	chr15	67341773	67342773	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045140, intron 7 of 8)	intron (NR_045140, intron 7 of 8)	115504.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	0.0	0.0	1.0	0.0	1.0	7.0
Merged-chr12-14141788-2	chr12	14141288	14142288	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10250.0	NM_029007	105005.0	Mm.227253	NM_029007	ENSMUSG00000020607	Fam84a	2310003N02Rik|4731402F03Rik|AW125753|Nse1	family with sequence similarity 84, member A	protein-coding	0.0	0.0	2.5	0.0	0.0	0.0
Merged-chr14-61817888-1	chr14	61817388	61818388	+	622.0	f0_balb.idr	Intergenic	Intergenic	-135515.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134775011-1	chr6	134774511	134775511	+	622.0	f0_balb.idr	intron (NM_130447, intron 1 of 6)	intron (NM_130447, intron 1 of 6)	-17349.0	NR_151454	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	17.0	11.0	5.5	8.0	18.0	16.5
Merged-chr2-15486899-2	chr2	15486399	15487399	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	-39580.0	NM_001310455	102635496.0		NM_001310455	ENSMUSG00000075520	Malrd1	Diet1|Gm13318|Gm13364	MAM and LDL receptor class A domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31130109-2	chr14	31129609	31130609	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1179.0	NM_001308464	66487.0	Mm.379116	NM_001308091	ENSMUSG00000058351	Smim4	2010107H07Rik|Gm41122	small integral membrane protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113713703-2	chr6	113713203	113714203	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3989.0	NR_138135	58991.0	Mm.379095	NM_021488	ENSMUSG00000064177	Ghrl	2210006E23Rik|Ghr|MTLRP|MTLRPAP|m46	ghrelin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118130194-2	chr10	118129694	118130694	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2E|LTR|ERVL	-11593.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67823207-2	chr5	67822707	67823707	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	24224.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59524463-2	chr11	59523963	59524963	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17106.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-147099562-1	chr6	147099062	147100062	+	622.0	f0_balb.idr	intron (NM_001081237, intron 1 of 2)	intron (NM_001081237, intron 1 of 2)	8487.0	NM_001081237	232539.0	Mm.491206	NM_001081237	ENSMUSG00000040102	Klhl42	A330079N23Rik|AI450355|C230080I20Rik|Ctb9|Klhdc5|mKIAA1340	kelch-like 42	protein-coding	7.0	0.5	14.5	3.5	4.0	26.5
Merged-chr6-145142161-1	chr6	145141661	145142661	+	622.0	f1_balb.idr	intron (NM_008511, intron 3 of 18)	intron (NM_008511, intron 3 of 18)	-3314.0	NM_001361633	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	15.5	5.0	11.5	3.0	1.0	3.0
Merged-chr14-54411727-2	chr14	54411227	54412227	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253679, intron 2 of 10)	intron (NM_001253679, intron 2 of 10)	-2255.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	11.5	5.5	2.0	15.0	9.5	5.5
Merged-chr2-54632327-2	chr2	54631827	54632827	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173030, intron 3 of 12)	intron (NM_173030, intron 3 of 12)	195940.0	NM_173030	271786.0	Mm.330227	NM_173030	ENSMUSG00000060988	Galnt13	A230002A12|A230020F20|BB182356	polypeptide N-acetylgalactosaminyltransferase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-75572476-1	chr12	75571976	75572976	+	622.0	f0_balb.idr	intron (NM_012024, intron 2 of 13)	intron (NM_012024, intron 2 of 13)	23724.0	NM_012024	26932.0	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41326361-1	chr13	41325861	41326861	+	622.0	f0_balb.idr	intron (NM_001111324, intron 3 of 7)	intron (NM_001111324, intron 3 of 7)	32640.0	NM_017464	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75790167-2	chr2	75789667	75790667	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42010.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75913408-2	chr11	75912908	75913908	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291159, intron 1 of 4)	intron (NM_001291159, intron 1 of 4)	-2349.0	NM_029548	380714.0	Mm.425697	NM_029548	ENSMUSG00000020847	Rph3al	Gm1753|Noc2	rabphilin 3A-like (without C2 domains)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14279510-2	chr2	14279010	14280010	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 10 of 29)	RMER15|LTR|ERVL	18507.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35327924-2	chr2	35327424	35328424	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013515, intron 1 of 6)	HAL1|LINE|L1	9085.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122180025-2	chr5	122179525	122180525	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21746.0	NM_013636	19047.0	Mm.280784	NM_013636	ENSMUSG00000004455	Ppp1cc	PP-1G|PP1|dis2m1	protein phosphatase 1, catalytic subunit, gamma isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44519399-2	chr7	44518899	44519899	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146189, intron 7 of 27)	intron (NM_146189, intron 7 of 27)	5270.0	NM_146189	233199.0	Mm.358888	NM_146189	ENSMUSG00000038670	Mybpc2	-	myosin binding protein C, fast-type	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101821450-2	chr5	101820950	101821950	+	622.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_173370, exon 13 of 13)	exon (NM_173370, exon 13 of 13)	56320.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108309524-1	chr12	108309024	108310024	+	622.0	f0_balb.idr	intron (NM_001044380, intron 1 of 8)	L2c|LINE|L2	3254.0	NM_001044380	214305.0	Mm.36423	NM_001044380	ENSMUSG00000021260	Hhipl1	1600002O04Rik|AK129450|mKIAA1822	hedgehog interacting protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-124915429-2	chr4	124914929	124915929	+	622.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001256432, exon 16 of 17)	exon (NM_001256432, exon 16 of 17)	-20647.0	NR_040651	73628.0	Mm.398337	NR_040651	ENSMUSG00000085263	1700125G02Rik	-	RIKEN cDNA 1700125G02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47527435-2	chr17	47526935	47527935	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	22384.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83605056-1	chr8	83604556	83605556	+	622.0	f1_c57bl6.idr	Intergenic	B4|SINE|B4	-3119.0	NM_018808	81489.0	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	10.5	0.0	2.0	1.0	5.5	9.0
Merged-chr3-126667459-3	chr3	126666969	126667969	+	622.0	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	70518.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	6.0	32.5	5.5	9.5	15.0	7.0
Merged-chr11-98839640-2	chr11	98839140	98840140	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080925, intron 1 of 14)	intron (NM_001080925, intron 1 of 14)	2855.0	NM_001080925	268480.0	Mm.340766	NM_001080925	ENSMUSG00000038020	Rapgefl1	B230105J10	Rap guanine nucleotide exchange factor (GEF)-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-17004170-2	chr7	17003670	17004670	+	622.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011155)	TTS (NM_011155)	9582.0	NM_001101535	434130.0	Mm.459162	NM_001101535	ENSMUSG00000041117	Ccdc8	-	coiled-coil domain containing 8	protein-coding	0.0	4.5	1.0	0.0	2.0	2.5
Merged-chr15-100176478-2	chr15	100175978	100176978	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172819, intron 14 of 32)	intron (NM_172819, intron 14 of 32)	11558.0	NR_037311	100499528.0		NR_037311	ENSMUSG00000092752	Mir3473a	Mir3473|mir-3473a|mmu-mir-3473|mmu-mir-3473a	microRNA 3473a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84774455-1	chr3	84773955	84774955	+	622.0	f0_balb.idr	Intergenic	Intergenic	-41122.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	5.0	0.0	2.0	2.5	0.0	1.0
Merged-chr19-40742885-2	chr19	40742385	40743385	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83115.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10475587-2	chr16	10475087	10476087	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-4485.0	NM_001302619	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67244681-2	chr7	67244181	67245181	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 8 of 11)	intron (NM_001357324, intron 8 of 11)	22065.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81321413-2	chr7	81320913	81321913	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 17 of 21)	intron (NM_008803, intron 17 of 21)	23821.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107829147-3	chr4	107828642	107829642	+	622.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080926, intron 2 of 18)	intron (NM_001080926, intron 2 of 18)	-6120.0	NR_151515	619295.0	Mm.331760	NM_001033800		Lrp8os2	B230314M03Rik	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor, opposite strand 2	ncRNA	0.0	0.0	3.5	2.5	0.0	2.0
Merged-chr5-135885906-2	chr5	135885406	135886406	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-2013.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125572259-1	chr8	125571759	125572759	+	622.0	f1_balb.idr	Intergenic	Intergenic	-2396.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	1.0	2.0	10.0	3.5	0.5	1.0
Merged-chr9-37545051-3	chr9	37544551	37545551	+	622.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_020518)	TTS (NM_020518)	5796.0	NM_020518	57276.0	Mm.27478	NM_020518	ENSMUSG00000001943	Vsig2	1190004B15Rik|2210413P10Rik|AU040484|CTX|Ctm	V-set and immunoglobulin domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150850824-2	chr2	150850324	150851324	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 2 of 12)	intron (NR_151505, intron 2 of 12)	-8254.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-23432308-2	chr1	23431808	23432808	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49133.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	10.0	15.0	14.0	9.0	9.5	13.0
Merged-chr17-84697007-2	chr17	84696507	84697507	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347418, intron 10 of 12)	MIRc|SINE|MIR	13886.0	NM_026180	67470.0	Mm.26581	NM_026180	ENSMUSG00000024254	Abcg8	1300003C16Rik|AI114946|sterolin-2	ATP binding cassette subfamily G member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-15753414-2	chr6	15752914	15753914	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	32753.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93684534-1	chr16	93684034	93685034	+	622.0	f1_balb.idr	intron (NM_173047, intron 1 of 2)	intron (NM_173047, intron 1 of 2)	1315.0	NM_173047	109857.0	Mm.4512	NM_173047	ENSMUSG00000022947	Cbr3	1110001J05Rik|C81353	carbonyl reductase 3	protein-coding	3.0	3.5	1.5	8.5	11.0	6.0
Merged-chr8-71361478-1	chr8	71360978	71361978	+	622.0	f1_c57bl6.idr	TTS (NM_001142323)	TTS (NM_001142323)	-5370.0	NM_001145780	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	1.5	2.0	1.0	3.5
Merged-chr5-134998234-2	chr5	134997734	134998734	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_026907, intron 1 of 4)	(TG)n|Simple_repeat|Simple_repeat	3116.0	NR_026907	71304.0	Mm.482317	NR_026907	ENSMUSG00000054909	Wbscr25	4933433J03Rik|4933439O14Rik	Williams Beuren syndrome chromosome region 25 (human)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12572979-2	chr13	12572479	12573479	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026184, intron 1 of 15)	intron (NM_026184, intron 1 of 15)	7096.0	NM_026184	67475.0	Mm.358706	NM_026184	ENSMUSG00000057069	Ero1lb	1300013B24Rik|1700065B09Rik|AI447560|Ero1b|ero1-beta	ERO1-like beta (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-97789873-2	chr4	97789373	97790373	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	12247.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-130457475-2	chr1	130456975	130457975	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010016, intron 4 of 9)	intron (NM_010016, intron 4 of 9)	5269.0	NM_010016	13136.0	Mm.101591	NM_010016	ENSMUSG00000026399	Cd55	Daf|Daf-GPI|Daf1|GPI-DAF	CD55 molecule, decay accelerating factor for complement	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-14156999-2	chr15	14156481	14157481	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR15|LTR|ERVK	-983306.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr2-129314552-1	chr2	129314052	129315052	+	622.0	f1_c57bl6.idr	Intergenic	Intergenic	-4580.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	25.0	43.5	17.0	11.5	38.0	21.5
Merged-chr5-148303173-2	chr5	148302673	148303673	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359505, intron 6 of 8)	Lx9|LINE|L1	37956.0	NM_001359505	77521.0	Mm.244177	NM_029920	ENSMUSG00000029651	Mtus2	5730592G18Rik|A730013O20Rik|AU067634|C130038G02Rik|Cazip|Gm763|mKIAA0774	microtubule associated tumor suppressor candidate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124743917-2	chr6	124743417	124744417	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007881, intron 7 of 9)	intron (NM_007881, intron 7 of 9)	-2838.0	NM_013535	14790.0	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31794673-2	chr14	31794173	31795173	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024604, intron 1 of 27)	intron (NM_001024604, intron 1 of 27)	35742.0	NM_001024604	105522.0	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99966480-1	chr12	99965980	99966980	+	622.0	f0_balb.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	1981.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97708172-2	chr11	97707672	97708672	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011971, intron 3 of 5)	intron (NM_011971, intron 3 of 5)	4738.0	NM_011971	26446.0	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-116033058-2	chr13	116032558	116033558	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	276630.0	NM_021459	16392.0	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115379415-2	chr8	115378915	115379915	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	327479.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-33794981-1	chr8	33794481	33795481	+	622.0	f1_balb.idr	intron (NM_019733, intron 7 of 8)	intron (NM_019733, intron 7 of 8)	-47211.0	NM_001206849	72632.0	Mm.443483	NM_001206849	ENSMUSG00000094500	Smim18	2700090O03Rik|AI835723	small integral membrane protein 18	protein-coding	0.0	2.0	1.0	0.5	2.5	0.0
Merged-chr5-138705368-1	chr5	138704868	138705868	+	622.0	f0_balb.idr	Intergenic	Intergenic	-49713.0	NM_030565	80752.0	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	2.5	0.0	0.5	8.5	5.5	0.5
Merged-chr17-81702754-2	chr17	81702254	81703254	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	PB1D10|SINE|Alu	35633.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88027569-1	chr6	88027069	88028069	+	622.0	f0_balb.idr	intron (NM_001293652, intron 1 of 7)	intron (NM_001293652, intron 1 of 7)	-7774.0	NM_001293654	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131293006-2	chr1	131292506	131293506	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 21 of 22)	intron (NM_001081011, intron 21 of 22)	-13443.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0.0	0.0	4.5	0.0	0.0	0.0
Merged-chr18-68197521-1	chr18	68197021	68198021	+	622.0	f0_balb.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-30425.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	2.5	2.0	7.0	13.0	0.0	0.5
Merged-chr1-125391982-2	chr1	125391482	125392482	+	622.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001205385)	TTS (NM_001205385)	43745.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-96576723-1	chr12	96576223	96577223	+	622.0	f1_c57bl6.idr	Intergenic	RLTR9E|LTR|ERVK	-529501.0	NR_103800	69423.0	Mm.46121	NM_027076		1700019M22Rik	-	NFX-like protein	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115807887-2	chr11	115807387	115808387	+	622.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_080643, exon 3 of 20)	exon (NM_080643, exon 3 of 20)	5705.0	NM_080643	140721.0	Mm.383737	NM_080643	ENSMUSG00000034471	Caskin2	1600028L06Rik|mKIAA1139	CASK-interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-192141354-1	chr1	192140854	192141854	+	622.0	f1_c57bl6.idr	intron (NR_033536, intron 1 of 3)	intron (NR_033536, intron 1 of 3)	-3314.0	NM_001290282	214742.0	Mm.207457	NM_144814	ENSMUSG00000037395	Rcor3	4921514E24Rik|C730034D20Rik|E130101E15Rik	REST corepressor 3	protein-coding	3.0	2.0	2.5	7.0	6.0	5.5
Merged-chr18-57806032-1	chr18	57805532	57806532	+	622.0	f0_balb.idr	Intergenic	Intergenic	-13699.0	NR_152225	100503033.0	Mm.381112	NR_152224		Gm19519	-	predicted gene, 19519	ncRNA	5.5	4.0	5.5	17.5	0.0	0.5
Merged-chr9-114925730-3	chr9	114925236	114926236	+	621.916687	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_175380, intron 1 of 7)	intron (NM_175380, intron 1 of 7)	8251.0	NM_175380	333433.0	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	6.0	9.5	1.0	16.5	8.5	0.5
Merged-chr4-134547273-5	chr4	134546816	134547816	+	621.900024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029100, intron 3 of 11)	intron (NM_029100, intron 3 of 11)	4850.0	NM_029100	74777.0	Mm.29773	NM_029100	ENSMUSG00000050989	Selenon	1110019I12Rik|AI414492|SelN|Sepn1	selenoprotein N	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88287872-2	chr7	88287372	88288372	+	621.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311790, intron 3 of 3)	intron (NM_001311790, intron 3 of 3)	9787.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-21393958-3	chr12	21393454	21394454	+	621.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011739, intron 4 of 4)	MTD|LTR|ERVL-MaLR	-20322.0	NM_009615	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	35.0	73.0	63.5	18.0	7.0	27.5
Merged-chr4-155199861-2	chr4	155199361	155200361	+	621.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	22674.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-5108257-2	chr15	5107757	5108757	+	621.875	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163138, exon 2 of 4)	exon (NM_001163138, exon 2 of 4)	276.0	NM_001163138	239319.0	Mm.31252	NM_001163138	ENSMUSG00000041849	Card6	D730008L15	caspase recruitment domain family, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180767697-2	chr1	180767197	180768197	+	621.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41654.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134394808-3	chr5	134394304	134395304	+	621.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081462, intron 9 of 29)	intron (NM_001081462, intron 9 of 29)	61458.0	NM_001081465	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-66818978-2	chr10	66818478	66819478	+	621.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	101406.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51815456-3	chr11	51814977	51815977	+	621.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_199299, exon 12 of 12)	3' UTR (NM_199299, exon 12 of 12)	42004.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34590427-2	chr17	34589927	34590927	+	621.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_134116, intron 1 of 3)	intron (NM_134116, intron 1 of 3)	621.0	NM_134116	106512.0	Mm.26584	NM_134116	ENSMUSG00000034786	Gpsm3	AA960287|AGS4	G-protein signalling modulator 3 (AGS3-like, C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-69861059-2	chr14	69860559	69861559	+	621.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 3 of 6)	intron (NM_028560, intron 3 of 6)	20652.0	NM_028526	73523.0	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62540006-2	chr10	62539506	62540506	+	621.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12561.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73187948-2	chr15	73187448	73188448	+	621.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3001.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43780926-2	chr5	43780456	43781456	+	621.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_178729, intron 1 of 8)	intron (NM_178729, intron 1 of 8)	1193.0	NM_001159963	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	11.0	9.0	4.5	13.5	3.0	5.0
Merged-chr13-20185716-3	chr13	20185209	20186209	+	621.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 2 of 21)	intron (NM_080288, intron 2 of 21)	95202.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	16.5	50.5	32.5	9.5	34.5	29.0
Merged-chr12-113042836-3	chr12	113042325	113043325	+	621.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081170, intron 1 of 23)	L1MC|LINE|L1	28317.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11094492-3	chr8	11093981	11094981	+	621.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86051.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-44975447-3	chr2	44974943	44975943	+	621.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47734.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-140424219-3	chr6	140423683	140424683	+	621.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144920)	promoter-TSS (NM_144920)	84.0	NM_144920	109135.0	Mm.247670	NM_144920	ENSMUSG00000030231	Plekha5	2810431N21Rik|AI428202|AK129423|AMH-Cre|Ayu21-9|Gt(pU21)9Imeg|Pepp2|Tg(AMH-cre)1Flor	pleckstrin homology domain containing, family A member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-79555456-2	chr14	79554956	79555956	+	621.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 2 of 8)	(A)n|Simple_repeat|Simple_repeat	-32204.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-25540639-3	chr18	25540147	25541147	+	621.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362322, intron 2 of 12)	intron (NM_001362322, intron 2 of 12)	139101.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32665541-1	chr2	32665041	32666041	+	621.666687	f0_balb.idr	intron (NM_001146348, intron 2 of 14)	intron (NM_001146348, intron 2 of 14)	13212.0	NR_035479	100316776.0		NR_035479	ENSMUSG00000093336	Mir1954	mmu-mir-1954	microRNA 1954	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123270177-3	chr9	123269691	123270691	+	621.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9402.0	NM_001002267	72309.0	Mm.8569	NM_001002267	ENSMUSG00000054871	Tmem158	2310037P21Rik|Ris1	transmembrane protein 158	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38773040-3	chr16	38772549	38773549	+	621.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178924)	TTS (NM_178924)	27154.0	NM_178924	22268.0	Mm.130793	NM_178924	ENSMUSG00000049436	Upk1b	AI413235|Tspan20|UPIb|Upk1	uroplakin 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-71723162-3	chr1	71722669	71723669	+	621.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69834.0	NR_040308	100042814.0	Mm.405775	NR_040308	ENSMUSG00000073652	Apol7d	Gm15456	apolipoprotein L 7d	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7833727-3	chr9	7833284	7834284	+	621.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001291503, exon 2 of 8)	exon (NM_001291503, exon 2 of 8)	3022.0	NM_001291503	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117523958-2	chr8	117523458	117524458	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 2 of 32)	intron (NM_172285, intron 2 of 32)	25683.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-72225262-2	chr1	72224762	72225762	+	621.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C2|LTR|ERVK	-12948.0	NM_001357488	381269.0	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84997855-2	chr17	84997355	84998355	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159498, intron 3 of 7)	ORR1B2|LTR|ERVL-MaLR	-30492.0	NM_009205	20532.0	Mm.227176	NM_009205	ENSMUSG00000024131	Slc3a1	D2H|NBAT|NTAA|RBAT	solute carrier family 3, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80063714-2	chr7	80063214	80064214	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045695, intron 2 of 2)	intron (NR_045695, intron 2 of 2)	11543.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	8.5	40.5	23.0	15.0	55.5	57.5
Merged-chr17-83731720-2	chr17	83731220	83732220	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 3 of 16)	MTD|LTR|ERVL-MaLR	25557.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35978237-2	chr17	35977737	35978737	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282025, intron 4 of 4)	intron (NM_001282025, intron 4 of 4)	786.0	NM_001282012	75210.0	Mm.40036	NM_145487	ENSMUSG00000038500	Prr3	4930540G07Rik|Cat56	proline-rich polypeptide 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-53535587-2	chr9	53535087	53536087	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007499, intron 1 of 62)	intron (NM_007499, intron 1 of 62)	1084.0	NM_007499	11920.0	Mm.5088	NM_007499	ENSMUSG00000034218	Atm	AI256621|C030026E19Rik	ataxia telangiectasia mutated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24698963-2	chr17	24698458	24699458	+	621.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357836, exon 5 of 9)	exon (NM_001357836, exon 5 of 9)	2724.0	NM_001357836	71893.0	Mm.390971	NM_027988	ENSMUSG00000019320	Noxo1	2310034C04Rik|P41NOX|P41NOXA|P41NOXB|P41NOXC|Snx28|hslt	NADPH oxidase organizer 1	protein-coding	2.0	1.5	7.0	1.5	0.5	5.0
Merged-chr4-3792265-2	chr4	3791764	3792764	+	621.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010747)	TTS (NM_010747)	43391.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	4.0	4.0	4.5	2.0	10.0	3.0
Merged-chr3-79299604-1	chr3	79299104	79300104	+	621.5	f0_balb.idr	Intergenic	ID_B1|SINE|B4	-45772.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	0.0	0.0	2.0	3.5	0.0	0.5
Merged-chr1-75136444-2	chr1	75135962	75136962	+	621.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001356264, exon 8 of 8)	exon (NM_001356264, exon 8 of 8)	-2572.0	NM_194333	22626.0	Mm.68157	NM_194333	ENSMUSG00000026205	Slc23a3	SVCT3|Yspl1	solute carrier family 23 (nucleobase transporters), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-99391481-2	chr6	99390981	99391981	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053202, intron 1 of 18)	intron (NM_053202, intron 1 of 18)	43864.0	NM_053202	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128455080-2	chr10	128454580	128455580	+	621.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-3600.0	NR_106183	102465894.0		NR_106183	ENSMUSG00000098957	Mir8105	Gm27346|mmu-mir-8105	microRNA 8105	ncRNA	2.0	2.0	8.5	3.0	1.0	2.0
Merged-chr6-146198560-2	chr6	146198060	146199060	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 45 of 56)	intron (NM_019923, intron 45 of 56)	264438.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81330767-2	chr7	81330267	81331267	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 20 of 21)	intron (NM_008803, intron 20 of 21)	14467.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166807770-2	chr2	166807270	166808270	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085495, intron 1 of 38)	B4A|SINE|B4	2189.0	NM_001085495	99371.0	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54320495-2	chr13	54319995	54320995	+	621.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCCCG)n|Simple_repeat|Simple_repeat	-50854.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19350033-2	chr7	19349533	19350533	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127324, intron 3 of 6)	intron (NM_001127324, intron 3 of 6)	4962.0	NM_007948	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0.0	0.0	0.0	4.5	0.0	5.0
Merged-chr18-73767066-2	chr18	73766566	73767566	+	621.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12587.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	5.0	3.0	4.5	1.0	1.0	5.0
Merged-chr8-126533899-2	chr8	126533399	126534399	+	621.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58834.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-143622118-2	chr1	143621618	143622618	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145991, intron 13 of 16)	intron (NM_145991, intron 13 of 16)	-18579.0	NM_020025	26878.0	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97574499-2	chr11	97573999	97574999	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 1 of 19)	intron (NM_018873, intron 1 of 19)	627.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164860312-1	chr2	164859812	164860812	+	621.5	f0_balb.idr	Intergenic	Lx5c|LINE|L1	-2604.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	16.5	101.0	50.5	69.5	118.5	63.0
Merged-chr11-95398032-2	chr11	95397532	95398532	+	621.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13176.0	NM_001357797	110172.0	Mm.4593	NM_016752	ENSMUSG00000020873	Slc35b1	UGTrel1|Ugalt2	solute carrier family 35, member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-85747542-2	chr9	85747042	85748042	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175371, intron 1 of 27)	ORR1D1|LTR|ERVL-MaLR	1792.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149711783-2	chr4	149711283	149712283	+	621.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	-10154.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	6.0	6.5	3.0	0.0	0.0	2.0
Merged-chr12-4212055-2	chr12	4211555	4212555	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 20 of 21)	intron (NM_001159537, intron 20 of 21)	21910.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90748148-2	chr2	90747648	90748648	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018828, intron 2 of 16)	B2_Mm1t|SINE|B2	2778.0	NM_018828	55935.0	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135393404-2	chr5	135392904	135393904	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_148932, intron 1 of 12)	ID_B1|SINE|B4	1142.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126496471-2	chr8	126495971	126496971	+	621.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-21406.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29438932-2	chr17	29438458	29439458	+	621.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-52087.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	2.0	8.5	0.0	5.0	0.0	2.5
Merged-chr1-171391193-2	chr1	171390698	171391698	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005508, intron 1 of 11)	intron (NM_001005508, intron 1 of 11)	2238.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	49.5	166.5	103.0	43.0	91.5	46.0
Merged-chr10-81527553-2	chr10	81527053	81528053	+	621.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-3328.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108437326-2	chr3	108436826	108437826	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011319, intron 2 of 11)	B1_Mus1|SINE|Alu	7933.0	NM_011319	20226.0	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-98110062-2	chr4	98109562	98110562	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 10 of 10)	intron (NM_010905, intron 10 of 10)	273203.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71282537-2	chr17	71282136	71283136	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	28375.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	1.0	3.5	6.5	11.0	0.0	6.5
Merged-chr18-35552120-2	chr18	35551620	35552620	+	621.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1290.0	NR_038073	100503380.0	Mm.482118	NR_038073	ENSMUSG00000097769	Snhg4	Gm17457	small nucleolar RNA host gene 4	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114104867-2	chr7	114104367	114105367	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	12914.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122176601-2	chr5	122176101	122177101	+	621.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18322.0	NM_013636	19047.0	Mm.280784	NM_013636	ENSMUSG00000004455	Ppp1cc	PP-1G|PP1|dis2m1	protein phosphatase 1, catalytic subunit, gamma isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8946098-2	chr12	8945598	8946598	+	621.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1831.0	NM_010770	17182.0	Mm.42226	NM_010770	ENSMUSG00000020583	Matn3	AV009181	matrilin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8862172-2	chr4	8861672	8862672	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 33 of 36)	intron (NM_001355382, intron 33 of 36)	110848.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118616551-2	chr11	118616051	118617051	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024931, intron 3 of 14)	intron (NM_001024931, intron 3 of 14)	139719.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-18602185-2	chr10	18601685	18602685	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033258, intron 27 of 33)	B3|SINE|B2	-56109.0	NM_019487	56016.0	Mm.35551	NM_019487	ENSMUSG00000019853	Hebp2	SOUL	heme binding protein 2	protein-coding	0.0	0.5	0.0	0.0	0.5	0.0
Merged-chr5-137507265-2	chr5	137506765	137507765	+	621.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-4836.0	NM_028753	74097.0	Mm.290242	NM_028753	ENSMUSG00000029715	Pop7	0610037N12Rik|AI852017|Rpp20	processing of precursor 7, ribonuclease P family, (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56007720-2	chr17	56007220	56008220	+	621.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145934, exon 1 of 14)	5' UTR (NM_145934, exon 1 of 14)	416.0	NM_145934	106766.0	Mm.204991	NM_145934	ENSMUSG00000038781	Stap2	AW049765|STAP-2	signal transducing adaptor family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6541401-2	chr2	6540901	6541901	+	621.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001110230, exon 15 of 15)	3' UTR (NM_001110230, exon 15 of 15)	180261.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35126056-2	chr9	35125556	35126556	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027030, intron 5 of 5)	intron (NM_027030, intron 5 of 5)	-9192.0	NM_009178	20443.0	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	SIAT4-C|ST3Gal IV|ST3GalIV|Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105284769-2	chr4	105284269	105285269	+	621.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	127422.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141616426-2	chr7	141615926	141616926	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357068, intron 10 of 21)	Lx9|LINE|L1	-2679.0	NR_040337	100036523.0	Mm.398994	NR_040337	ENSMUSG00000097170	Gm16982	-	predicted gene, 16982	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-92267279-2	chr13	92266779	92267779	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311120, intron 15 of 23)	Lx8|LINE|L1	-87504.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	0.0	1.5	4.0	0.0	0.5	3.5
Merged-chr16-35766501-2	chr16	35766001	35767001	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	RLTR30|LTR|ERV1	2855.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	10.0	13.0	9.0	11.0	23.5	9.0
Merged-chr10-81263900-2	chr10	81263400	81264400	+	621.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001285854)	TTS (NM_001285854)	3026.0	NM_025317	66047.0	Mm.43397	NM_025317	ENSMUSG00000034932	Mrpl54	0610008M19Rik|D10Sut1e	mitochondrial ribosomal protein L54	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6362728-2	chr19	6362228	6363228	+	621.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011750)	promoter-TSS (NM_011750)	-962.0	NM_011750	22668.0	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-39496403-2	chr12	39495903	39496903	+	621.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	540973.0	NM_007487	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67251955-2	chr10	67251455	67252455	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 24 of 25)	intron (NM_207221, intron 24 of 25)	33326.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33950808-2	chr17	33950316	33951316	+	621.5	f0_balb.idr|f0_c57.idr	exon (NM_019420, exon 1 of 1)	exon (NM_019420, exon 1 of 1)	672.0	NM_019420	54218.0	Mm.11132	NM_019420	ENSMUSG00000067370	B3galt4	Gal-T2|Galt2	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4	protein-coding	6.0	29.5	22.0	5.5	55.5	39.0
Merged-chr6-127241387-2	chr6	127240887	127241887	+	621.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66580.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-84879405-2	chr11	84878905	84879905	+	621.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025414)	promoter-TSS (NM_025414)	790.0	NM_027388	70325.0	Mm.390414	NM_027388	ENSMUSG00000045140	Pigw	2610044A17Rik|Gwt1	phosphatidylinositol glycan anchor biosynthesis, class W	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127629603-2	chr10	127629084	127630084	+	621.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8436.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	11.0	0.0	3.0	0.5	2.0	6.0
Merged-chr2-26756773-2	chr2	26756273	26757273	+	621.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25053.0	NM_001359164	105244099.0		NM_001359164		Gm39773	LCN16	predicted gene, 39773	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53109837-1	chr4	53109337	53110337	+	621.5	f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	MER5A|DNA|hAT-Charlie	50058.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	1.0	2.0	2.0	0.0	7.0	4.5
Merged-chr2-30954065-2	chr2	30953565	30954565	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133673, intron 2 of 4)	intron (NM_133673, intron 2 of 4)	1064.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-52065091-2	chr16	52064591	52065591	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	33542.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-83532060-1	chr9	83531560	83532560	+	621.5	f1_balb.idr	Intergenic	RMER1B|Other|Other	-16278.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0.0	11.0	0.0	0.0	0.0	0.0
Merged-chr6-113675405-2	chr6	113674905	113675905	+	621.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 5 of 11)	intron (NM_001113553, intron 5 of 11)	-21645.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30608074-3	chr7	30607563	30608563	+	621.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026815, intron 3 of 7)	intron (NM_026815, intron 3 of 7)	4671.0	NM_026815	109637.0	Mm.25471	NM_026815	ENSMUSG00000006313	Upk1a	1110031P12Rik|AU019298|C87192|Tspan21|Upk1	uroplakin 1A	protein-coding	2.0	5.5	0.0	4.5	3.0	0.5
Merged-chr6-149207279-4	chr6	149206781	149207781	+	621.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18569.0	NM_001113424	232566.0	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101927437-2	chr5	101926937	101927937	+	621.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 17 of 66)	intron (NM_172882, intron 17 of 66)	142484.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-133120195-2	chr1	133119655	133120655	+	621.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11011.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	2.0	4.0	1.0	1.0	1.0	0.5
Merged-chr19-37307422-3	chr19	37306919	37307919	+	621.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031156, intron 10 of 23)	intron (NM_031156, intron 10 of 23)	23194.0	NM_031156	15925.0	Mm.28366	NM_031156	ENSMUSG00000056999	Ide	1300012G03Rik|4833415K22Rik|AA675336|AI507533	insulin degrading enzyme	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120755509-2	chr4	120755009	120756009	+	621.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8333.0	NM_001081142	60613.0	Mm.249977	NM_001081142	ENSMUSG00000028631	Kcnq4	-	potassium voltage-gated channel, subfamily Q, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-107649344-2	chr7	107648844	107649844	+	621.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_008905, intron 2 of 24)	intron (NM_008905, intron 2 of 24)	-16134.0	NM_001357437	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81359862-2	chr10	81359362	81360362	+	621.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_028657, intron 1 of 9)	intron (NM_028657, intron 1 of 9)	2371.0	NM_028657	73822.0	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1|gr	major facilitator superfamily domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35477973-3	chr18	35477466	35478466	+	621.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030749, intron 1 of 9)	RMER4B|LTR|ERVK	-8014.0	NM_001360814	81500.0	Mm.291482	NM_030749	ENSMUSG00000024357	Sil1	1810057E01Rik|AI042831|wz	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-19954687-3	chr11	19954221	19955221	+	621.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	30279.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-149862878-2	chr1	149862378	149863378	+	621.325012	f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 12 of 17)	intron (NM_008869, intron 12 of 17)	59561.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141636465-2	chr7	141635965	141636965	+	621.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330001, intron 31 of 33)	intron (NM_001330001, intron 31 of 33)	15764.0	NR_106030	102466798.0		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34598694-2	chr19	34598194	34599194	+	621.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101605, intron 1 of 1)	intron (NM_001101605, intron 1 of 1)	733.0	NM_001110517	667373.0	Mm.371956	NM_001101605	ENSMUSG00000079339	Ifit1bl1	Gm14446|Ifit1c	interferon induced protein with tetratricpeptide repeats 1B like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165951844-2	chr2	165951344	165952344	+	621.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-40793.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	4.0	0.0	16.5	1.0	1.5	4.0
Merged-chr9-107743309-2	chr9	107742808	107743808	+	621.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_153190, intron 21 of 23)	intron (NR_153190, intron 21 of 23)	27694.0	NM_148930	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	3.5	7.0	4.0	7.5	0.0	5.5
Merged-chr7-101897899-2	chr7	101897399	101898399	+	621.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291352, intron 2 of 5)	intron (NM_001291352, intron 2 of 5)	1568.0	NM_001291349	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	4.0	4.5	3.0	2.0	8.0	1.0
Merged-chr1-161809163-2	chr1	161808657	161809657	+	621.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20662.0	NM_010177	14103.0	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	4.5	16.0	14.0	7.5	21.0	5.5
Merged-chr1-153493457-4	chr1	153492898	153493898	+	621.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-5738.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98829039-2	chr15	98828539	98829539	+	621.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_016781, intron 1 of 11)	B1_Mus2|SINE|Alu	2469.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-4339022-3	chr10	4338527	4339527	+	621.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031185, intron 2 of 3)	intron (NM_031185, intron 2 of 3)	48448.0	NM_001359811	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	5.0	0.0	0.0	0.0	0.0	2.0
Merged-chr17-47526791-3	chr17	47526295	47527295	+	621.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	21744.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32162262-2	chr17	32161762	32162762	+	621.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_008716, intron 2 of 32)	CpG	4590.0	NM_008716	18131.0	Mm.439741	NM_008716	ENSMUSG00000038146	Notch3	AW229011|N3|hpbk	notch 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36676220-2	chr18	36675720	36676720	+	621.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357512, exon 8 of 12)	exon (NM_001357512, exon 8 of 12)	-2995.0	NM_001360989	67843.0	Mm.273350	NM_026404	ENSMUSG00000033272	Slc35a4	2610030J16Rik	solute carrier family 35, member A4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-99152511-3	chr13	99152034	99153034	+	621.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32289.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	0.0	0.0	0.0	0.0	0.0	2.5
Merged-chr17-44814846-2	chr17	44814346	44815346	+	621.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073392)	promoter-TSS (NR_073392)	-49.0	NR_073392	12393.0	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182290925-2	chr1	182290422	182291422	+	621.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-8121.0	NM_007853	13244.0	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-75929168-2	chr5	75928610	75929610	+	621.166626	f0_balb.idr|f1_balb.idr	Intergenic	L1_Mus3|LINE|L1	49318.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	1.0	4.5	0.0	4.0	6.0	3.0
Merged-chr14-67053063-2	chr14	67052522	67053522	+	621.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360033, intron 2 of 10)	intron (NM_001360033, intron 2 of 10)	19449.0	NM_001360034	71978.0	Mm.273997	NM_028032	ENSMUSG00000022052	Ppp2r2a	2410004D02Rik|mKIAA1541	protein phosphatase 2, regulatory subunit B, alpha	protein-coding	1.5	8.0	13.5	3.0	3.0	11.0
Merged-chr6-142702401-2	chr6	142701901	142702901	+	621.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310143)	promoter-TSS (NM_001310143)	-127.0	NM_001310143	20928.0	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-140266299-2	chr1	140265797	140266797	+	621.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081027, intron 1 of 27)	intron (NM_001081027, intron 1 of 27)	20040.0	NM_001081027	240776.0	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119970325-2	chr9	119969825	119970825	+	621.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153287)	TTS (NM_153287)	12698.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97582968-2	chr15	97582468	97583468	+	621.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122854.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103112390-3	chr3	103111881	103112881	+	621.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-15175.0	NM_177857	329727.0	Mm.293641	NM_177857	ENSMUSG00000007379	Dennd2c	A930010I20Rik	DENN/MADD domain containing 2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-62883027-1	chr17	62882527	62883527	+	621.0	f0_balb.idr	Intergenic	Intergenic	-1710.0	NM_010109	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152827686-2	chr1	152827186	152828186	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 8 of 15)	intron (NM_010877, intron 8 of 15)	27533.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-92024130-2	chr2	92023630	92024630	+	621.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011957)	promoter-TSS (NM_011957)	40.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-157876885-1	chr3	157876385	157877385	+	621.0	f0_balb.idr	Intergenic	Intergenic	48178.0	NM_145953	107869.0	Mm.28301	NM_145953	ENSMUSG00000028179	Cth	0610010I13Rik|AI314617|BC019483|CSE|Cys3	cystathionase (cystathionine gamma-lyase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107101387-1	chr3	107100887	107101887	+	621.0	f1_c57bl6.idr	promoter-TSS (NM_008417)	promoter-TSS (NM_008417)	-180.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	3.5	15.5	17.5	0.0	19.0	15.0
Merged-chr11-58324157-2	chr11	58323657	58324657	+	621.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028331)	promoter-TSS (NR_028331)	-792.0	NR_028331	319475.0	Mm.72124	NM_178761	ENSMUSG00000049755	Zfp672	4930488P06Rik|4930511N19Rik|Znf672	zinc finger protein 672	protein-coding	19.0	23.5	29.5	26.5	31.5	35.5
Merged-chr7-141263910-2	chr7	141263410	141264410	+	621.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001252600, exon 7 of 9)	exon (NM_001252600, exon 7 of 9)	2514.0	NM_001252601	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-45277745-2	chr10	45277245	45278245	+	621.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-11560.0	NM_024286	78977.0	Mm.24748	NM_024286	ENSMUSG00000019848	Popdc3	AA682104|Pop3	popeye domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60796740-1	chr18	60796240	60797240	+	621.0	f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-7109.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	2.5	9.0	2.0	1.0	0.0	0.0
Merged-chr2-28839499-2	chr2	28838999	28839999	+	621.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033294)	promoter-TSS (NM_001033294)	861.0	NM_172977	269252.0	Mm.26043	NM_172977	ENSMUSG00000035666	Gtf3c4	5330400C03|AI426938|AU014771|AU017413|KAT12|TFIIIC90	general transcription factor IIIC, polypeptide 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135467132-3	chr1	135466652	135467652	+	621.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173437, intron 9 of 28)	intron (NM_173437, intron 9 of 28)	-12469.0	NR_049188	100885827.0		NR_049188	ENSMUSG00000093515	Mir1231	Gm23720|mir-1231|mmu-mir-1231	microRNA 1231	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182490605-2	chr1	182490105	182491105	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009794, intron 5 of 20)	intron (NM_009794, intron 5 of 20)	27005.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-55357422-2	chr3	55356922	55357922	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357475, intron 3 of 16)	intron (NM_001357475, intron 3 of 16)	-104306.0	NM_001195539	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45564303-2	chr7	45563803	45564803	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025330, intron 6 of 8)	B1_Mus1|SINE|Alu	-5850.0	NM_009737	12036.0	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat(m)|Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21529821-2	chr9	21529321	21530321	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_206536, intron 2 of 5)	B1F1|SINE|Alu	3644.0	NM_206536	382062.0	Mm.325205	NM_206536	ENSMUSG00000057191	AB124611	Gm1706	cDNA sequence AB124611	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42258186-2	chr10	42257686	42258686	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	18556.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6313373-2	chr19	6312873	6313873	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033342, intron 10 of 36)	intron (NM_001033342, intron 10 of 36)	6916.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31598741-2	chr5	31598241	31599241	+	621.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	-15210.0	NM_025796	66845.0	Mm.120763	NM_025796	ENSMUSG00000106918	Mrpl33	0610009M10Rik|L33mt|MRP-L33	mitochondrial ribosomal protein L33	protein-coding	1.5	1.5	0.0	0.0	0.0	0.0
Merged-chr6-123264306-2	chr6	123263834	123264834	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163161, intron 1 of 5)	intron (NM_001163161, intron 1 of 5)	2227.0	NM_010819	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45686471-2	chr14	45685971	45686971	+	621.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28328.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	16.0	28.0	36.0	15.0	19.5	21.0
Merged-chr13-97769942-1	chr13	97769442	97770442	+	621.0	f0_balb.idr	Intergenic	Intergenic	18830.0	NR_152263	111365222.0	Mm.440079	NR_152263		Eyelinc18	-	uncharacterized EyeLinc18	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35826374-2	chr12	35825874	35826874	+	621.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99247.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152589708-2	chr1	152589208	152590208	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	35509.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167703086-2	chr2	167702586	167703586	+	621.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11909.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-47867783-2	chr8	47867283	47868283	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133791, intron 11 of 22)	B4A|SINE|B4	43301.0	NM_029383	75677.0	Mm.390033	NM_029383	ENSMUSG00000038064	Cldn22	2210404A22Rik|5330431C14Rik|9530051B05Rik	claudin 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-72978926-1	chr3	72978426	72979426	+	621.0	f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-11063.0	NM_001081137	69983.0	Mm.261054	NM_001081137	ENSMUSG00000027790	Sis	2010204N08Rik|SI|Si-s	sucrase isomaltase (alpha-glucosidase)	protein-coding	4.5	0.0	0.0	0.0	0.0	1.0
Merged-chr10-94596765-2	chr10	94596265	94597265	+	621.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10566.0	NR_106070	102466817.0		NR_106070	ENSMUSG00000098544	Mir7211	Gm27536|mmu-mir-7211	microRNA 7211	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83782387-1	chr8	83781887	83782887	+	621.0	f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-41076.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	2.0	0.0	2.5	0.0	0.0	6.5
Merged-chr14-51995750-2	chr14	51995250	51996250	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145921, intron 11 of 23)	intron (NM_001145921, intron 11 of 23)	-6921.0	NR_045728	100502764.0	Mm.437219	NR_045728	ENSMUSG00000097633	Gm16617	-	predicted gene, 16617	ncRNA	0.0	3.0	0.0	0.0	3.0	0.0
Merged-chr2-32448659-2	chr2	32448159	32449159	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146118, intron 1 of 10)	intron (NM_146118, intron 1 of 10)	-1798.0	NM_194335	71254.0	Mm.102341	NM_194335	ENSMUSG00000039164	Naif1	2310007O20Rik|4933440H19Rik	nuclear apoptosis inducing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-31631495-2	chr18	31630995	31631995	+	621.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2873.0	NM_001357554	269003.0	Mm.194538	NM_172965	ENSMUSG00000024260	Sap130	2610304F09Rik|6720406D06	Sin3A associated protein	protein-coding	0.0	0.0	3.5	0.0	0.0	1.5
Merged-chr9-7836411-1	chr9	7835911	7836911	+	621.0	f0_balb.idr	intron (NM_007465, intron 1 of 7)	intron (NM_007465, intron 1 of 7)	395.0	NM_001291503	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-101731060-2	chr2	101730560	101731560	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 7 of 8)	intron (NM_001355625, intron 7 of 8)	52640.0	NM_001303273	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	4.5	2.5	3.5	0.0	12.5	1.0
Merged-chr4-150824255-1	chr4	150823755	150824755	+	621.0	f0_balb.idr	Intergenic	Intergenic	-29541.0	NM_001356323	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130819090-2	chr4	130818590	130819590	+	621.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011520, exon 3 of 5)	exon (NM_011520, exon 3 of 5)	26553.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-178360910-1	chr1	178360410	178361410	+	621.0	f0_balb.idr	Intergenic	RLTR13D3|LTR|ERVK	-23095.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132364338-2	chr1	132363838	132364838	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178874, intron 2 of 4)	L1MB3|LINE|L1	3610.0	NM_001311108	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30740927-2	chr13	30740427	30741427	+	621.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8306.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43546892-1	chr4	43546392	43547392	+	621.0	f1_c57bl6.idr	exon (NM_011602, exon 20 of 57)	exon (NM_011602, exon 20 of 57)	15691.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	0.0	10.0	1.5	7.0	2.0	1.5
Merged-chr1-191196339-2	chr1	191195839	191196839	+	621.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13006.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114703493-1	chr5	114702993	114703993	+	621.0	f1_balb.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-4286.0	NM_029992	77832.0	Mm.239698	NM_029992	ENSMUSG00000002486	Tchp	A930031F18Rik|AV279199	trichoplein, keratin filament binding	protein-coding	0.0	5.5	3.0	0.0	0.0	3.5
Merged-chr16-14293045-1	chr16	14292545	14293545	+	621.0	f0_balb.idr	Intergenic	Intergenic	-1637.0	NM_013607	17880.0	Mm.250705	NM_013607	ENSMUSG00000018830	Myh11	AV071570|SM1|SM2|smMHC	myosin, heavy polypeptide 11, smooth muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-144979982-2	chr7	144979463	144980463	+	621.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-40038.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	1.5	1.5	0.5	2.5	0.0	1.0
Merged-chr9-42688289-1	chr9	42687789	42688789	+	621.0	f1_balb.idr	intron (NM_175481, intron 3 of 20)	intron (NM_175481, intron 3 of 20)	-216031.0	NM_173038	272589.0	Mm.34483	NM_173038	ENSMUSG00000037287	Tbcel	D330014K23|E130107N23Rik|Lrrc35	tubulin folding cofactor E-like	protein-coding	0.0	0.0	1.5	3.5	0.0	0.0
Merged-chr5-146727723-1	chr5	146727223	146728223	+	621.0	f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	67233.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	2.0	4.5	5.5	1.0	0.5	1.0
Merged-chr2-30706367-2	chr2	30705867	30706867	+	621.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-14843.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-81782147-2	chr12	81781647	81782647	+	621.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177395)	promoter-TSS (NM_177395)	-977.0	NM_001174107	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119441891-1	chr11	119441391	119442391	+	621.0	f1_c57bl6.idr	Intergenic	Intergenic	49344.0	NR_153849	78439.0	Mm.440446	NR_153849	ENSMUSG00000109408	A930037H05Rik	Gm44935	RIKEN cDNA A930037H05 gene	ncRNA	0.0	2.5	0.0	0.0	0.0	0.0
Merged-chr11-22841565-2	chr11	22841065	22842065	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	18170.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	4.0	6.5	2.0	4.0	1.5	3.5
Merged-chr9-90267031-2	chr9	90266531	90267531	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	3738.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30604497-2	chr2	30603997	30604997	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030137, intron 1 of 1)	B4A|SINE|B4	9453.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-24026730-1	chr18	24026230	24027230	+	621.0	f1_c57bl6.idr	Intergenic	MLT2B3|LTR|ERVL	-5917.0	NM_021559	59057.0	Mm.417427	NM_021559	ENSMUSG00000051469	Zfp24	3526401F17Rik|5033419P20Rik|AI480505|AI642085|AL024422|KOX17|ZF-12|Zfp191|Znf24	zinc finger protein 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29858958-2	chr6	29858458	29859458	+	621.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001171001)	promoter-TSS (NM_001171001)	-638.0	NM_001171001	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-97219653-3	chr13	97219151	97220151	+	621.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-21294.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-41976951-2	chr7	41976451	41977451	+	621.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	82030.0	NM_001105056	628444.0	Mm.469901	NM_001105056	ENSMUSG00000092032	Vmn2r59	EG628444	vomeronasal 2, receptor 59	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79331157-1	chr11	79330657	79331657	+	621.0	f1_c57bl6.idr	Intergenic	Intergenic	-8735.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14676587-1	chr8	14676087	14677087	+	621.0	f0_balb.idr	intron (NM_172910, intron 4 of 15)	B4|SINE|B4	-211949.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-72641192-1	chr1	72640692	72641692	+	621.0	f0_c57.idr	Intergenic	CpG	57941.0	NM_018817	54380.0	Mm.274232	NM_018817	ENSMUSG00000039354	Smarcal1	6030401P21Rik|AI851716|Mharp	SWI/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36319966-2	chr1	36319466	36320466	+	621.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033310, exon 6 of 6)	non-coding (NR_033310, exon 6 of 6)	12233.0	NM_001172205	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150825449-2	chr2	150824949	150825949	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153781, intron 15 of 19)	ORR1A3|LTR|ERVL-MaLR	17121.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-12319555-2	chr12	12319055	12320055	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 2 of 11)	intron (NM_001146119, intron 2 of 11)	57416.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122534866-2	chr14	122534366	122535366	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144844, intron 1 of 23)	intron (NM_144844, intron 1 of 23)	538.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-110601341-2	chr8	110600841	110601841	+	621.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172916, exon 84 of 87)	exon (NM_172916, exon 84 of 87)	-17226.0	NR_151674	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr17-45516271-1	chr17	45515771	45516771	+	621.0	f1_balb.idr	intron (NM_001358000, intron 9 of 20)	intron (NM_001358000, intron 9 of 20)	-7163.0	NM_013688	21645.0	Mm.491193	NM_013688	ENSMUSG00000023949	Tcte1	D17Sil1|Tcte-1	t-complex-associated testis expressed 1	protein-coding	0.0	0.0	2.0	0.0	0.0	1.0
Merged-chr12-79068454-2	chr12	79067954	79068954	+	621.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_181073, exon 16 of 29)	exon (NM_181073, exon 16 of 29)	21216.0	NM_029988	110417.0	Mm.268317	NM_029988	ENSMUSG00000021120	Pigh	2210416H01Rik|A930028P05Rik	phosphatidylinositol glycan anchor biosynthesis, class H	protein-coding	2.5	0.0	0.0	0.0	1.5	0.0
Merged-chr16-22616000-1	chr16	22615500	22616500	+	621.0	f0_balb.idr	intron (NM_001346673, intron 2 of 23)	MIRc|SINE|MIR	10674.0	NR_105781	102465962.0		NR_105781	ENSMUSG00000098448	Mir6362	Gm27812|mmu-mir-6362	microRNA 6362	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-63895760-2	chr15	63895260	63896260	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028992, intron 5 of 11)	B3|SINE|B2	15053.0	NR_108053	665769.0	Mm.290602	NR_108053	ENSMUSG00000093867	Gsdmcl2	4921501E01Rik|4930453O09Rik|Gm7779	gasdermin C-like 2	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117467643-2	chr8	117467143	117468143	+	621.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	8378.0	NR_106046	102465653.0		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-68908212-1	chr8	68907712	68908712	+	621.0	f1_balb.idr	Intergenic	RMER15|LTR|ERVL	27657.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	21.5	37.0	34.0	19.0	17.5	24.0
Merged-chr11-106760867-2	chr11	106760367	106761367	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_073165, intron 4 of 9)	intron (NR_073165, intron 4 of 9)	9641.0	NM_001033435	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81623753-2	chr10	81623253	81624253	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163430, intron 6 of 8)	intron (NM_001163430, intron 6 of 8)	3569.0	NM_001163430	50721.0	Mm.25643	NM_181586	ENSMUSG00000034748	Sirt6	2810449N18Rik|AI043036|Sir2l6	sirtuin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-57949706-2	chr4	57949206	57950206	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011660, intron 3 of 4)	intron (NM_011660, intron 3 of 4)	6705.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3279221-3	chr5	3278727	3279727	+	621.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-64666.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-24587478-1	chr1	24586978	24587978	+	621.0	f0_balb.idr	promoter-TSS (NM_007733)	promoter-TSS (NM_007733)	-41.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83793356-2	chr6	83792856	83793856	+	621.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_136916)	TTS (NR_136916)	914.0	NR_136916	665004.0		NR_136916		Gm7443	EG665004	ribosomal protein L27 pseudogene	pseudo	2.0	2.0	1.0	2.0	0.0	0.0
Merged-chr15-73144393-2	chr15	73143893	73144893	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 2 of 18)	intron (NM_153178, intron 2 of 18)	40554.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73696986-2	chr12	73696486	73697486	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 5 of 13)	intron (NM_008856, intron 5 of 13)	112190.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91720114-2	chr6	91719614	91720614	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	36047.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71661620-2	chr2	71661142	71662142	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	RMER1C|Other|Other	-57775.0	NR_037979	381371.0	Mm.330284	NM_201366	ENSMUSG00000064263	Platr26	Gm1631	pluripotency associated transcript 26	ncRNA	27.0	31.5	15.0	9.0	32.5	26.5
Merged-chr2-165886958-2	chr2	165886458	165887458	+	621.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2120.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	4.5	17.0	11.0	5.0	12.5	11.5
Merged-chr14-54764982-1	chr14	54764482	54765482	+	621.0	f0_balb.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	16904.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	9.0	8.0	1.0	13.5	18.0	23.0
Merged-chr13-60707005-2	chr13	60706505	60707505	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	intron (NM_134062, intron 3 of 26)	79359.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	13.5	42.5	24.0	18.0	25.5	31.0
Merged-chr7-81110443-2	chr7	81109943	81110943	+	621.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4356.0	NM_001004184	434203.0	Mm.389909	NM_001004184	ENSMUSG00000025726	Slc28a1	Cnt1	solute carrier family 28 (sodium-coupled nucleoside transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10836511-2	chr19	10836011	10837011	+	621.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-6033.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49869994-1	chr11	49869494	49870494	+	621.0	f0_c57.idr	intron (NM_016961, intron 5 of 11)	intron (NM_016961, intron 5 of 11)	23243.0	NM_016961	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90072822-2	chr9	90072322	90073322	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312649, intron 9 of 10)	intron (NM_001312649, intron 9 of 10)	18555.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121623208-1	chr10	121622708	121623708	+	621.0	f1_balb.idr	intron (NM_001359618, intron 1 of 24)	intron (NM_001359618, intron 1 of 24)	3124.0	NM_001081056	73192.0	Mm.25042	NM_001081056	ENSMUSG00000034667	Xpot	1110004L07Rik|3110065H13Rik|AI452076|C79645|EXPORTIN-T	exportin, tRNA (nuclear export receptor for tRNAs)	protein-coding	3.5	3.0	2.0	0.0	0.5	0.0
Merged-chr19-21816346-2	chr19	21815846	21816846	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033759, intron 11 of 23)	intron (NM_001033759, intron 11 of 23)	38006.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-57643112-1	chr19	57642612	57643612	+	621.0	f0_balb.idr	intron (NM_181415, intron 5 of 28)	intron (NM_181415, intron 5 of 28)	32078.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	1.0	0.0	8.5	0.0	7.0	0.5
Merged-chr8-111628502-2	chr8	111628038	111629038	+	621.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027570, exon 6 of 11)	exon (NM_027570, exon 6 of 11)	1784.0	NM_027570	52815.0	Mm.27589	NM_027570	ENSMUSG00000031958	Ldhd	4733401P21Rik|D8Bwg1320e	lactate dehydrogenase D	protein-coding	1.0	0.0	2.0	0.0	0.0	0.0
Merged-chr12-75667121-1	chr12	75666621	75667621	+	621.0	f0_balb.idr	intron (NM_028203, intron 1 of 1)	intron (NM_028203, intron 1 of 1)	2416.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-109044225-2	chr7	109043725	109044725	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311161, intron 5 of 5)	intron (NM_001311161, intron 5 of 5)	33345.0	NM_021885	22141.0	Mm.439722	NM_021885	ENSMUSG00000031028	Tub	rd5|tub	tubby bipartite transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76335120-2	chr16	76334620	76335620	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358238, intron 2 of 3)	Lx|LINE|L1	37929.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-66854592-2	chr17	66854077	66855077	+	621.0	f0_balb.idr|f1_balb.idr	intron (NM_001357625, intron 15 of 32)	intron (NM_001357625, intron 15 of 32)	140121.0	NR_151453	102639882.0	Mm.443262	NR_151453		1700016K05Rik	-	RIKEN cDNA 1700016K05 gene	ncRNA	3.5	1.5	0.0	3.0	1.0	3.5
Merged-chr5-31253985-2	chr5	31253485	31254485	+	621.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027221)	TTS (NM_027221)	2279.0	NM_027221	69815.0	Mm.389609	NM_027221	ENSMUSG00000029149	Krtcap3	2010001C09Rik|AW321088|Kcp3	keratinocyte associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31874643-1	chr17	31874143	31875143	+	621.0	f1_c57bl6.idr	Intergenic	Intergenic	-18839.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	0.0	0.0	0.0	4.0	2.0	1.0
Merged-chr5-40085487-2	chr5	40084987	40085987	+	621.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-440856.0	NM_010474	15476.0	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	0.0	0.5	1.0	0.0	1.5	0.0
Merged-chr15-100598616-1	chr15	100598116	100599116	+	621.0	f1_balb.idr	intron (NM_001304965, intron 1 of 10)	intron (NM_001304965, intron 1 of 10)	1368.0	NM_001304965	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	4.0	18.0	27.0	3.0	12.5	9.5
Merged-chr5-112228754-2	chr5	112228254	112229254	+	621.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_003718, exon 1 of 7)	non-coding (NR_003718, exon 1 of 7)	194.0	NR_033657	330166.0	Mm.44854	NR_003718	ENSMUSG00000097767	Miat	3632434I06|A230057G18Rik|Rncr2|gomafu	myocardial infarction associated transcript (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4717583-1	chr12	4717083	4718083	+	621.0	f0_balb.idr	intron (NM_029107, intron 7 of 7)	intron (NM_029107, intron 7 of 7)	20800.0	NM_029107	74855.0	Mm.269534	NM_029107	ENSMUSG00000079177	Fam228a	4930417G10Rik	family with sequence similarity 228, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32182617-2	chr11	32182117	32183117	+	621.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17662.0	NM_001134458	16199.0	Mm.384	NM_008374	ENSMUSG00000020279	Il9r	-	interleukin 9 receptor	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr10-40073105-2	chr10	40072605	40073605	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 3 of 5)	B1_Mus2|SINE|Alu	-47837.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34896041-2	chr17	34895541	34896541	+	621.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_198886, exon 2 of 2)	exon (NM_198886, exon 2 of 2)	1482.0	NM_198886	193736.0	Mm.161119	NM_198886	ENSMUSG00000049823	Zbtb12	BC020447|Bat-9|Bat9|G10|NG35	zinc finger and BTB domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-116964226-3	chr13	116963725	116964725	+	620.972229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	61291.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	12.0	16.5	26.0	2.5	1.0	9.5
Merged-chr1-120327907-3	chr1	120327413	120328413	+	620.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12669.0	NM_207233	226359.0	Mm.337409	NM_207233	ENSMUSG00000036907	C1ql2	BC040774|CTRP10	complement component 1, q subcomponent-like 2	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr14-121961854-2	chr14	121961356	121962356	+	620.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_183031, intron 1 of 1)	intron (NM_183031, intron 1 of 1)	3337.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	0.0	1.5	0.0	0.0	2.0	4.0
Merged-chr15-39861279-2	chr15	39860779	39861779	+	620.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3809.0	NM_022722	64705.0	Mm.275974	NM_022722	ENSMUSG00000022304	Dpys	1200017I10Rik|1300004I01Rik|DHP|DHPase	dihydropyrimidinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156614882-2	chr1	156614382	156615382	+	620.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 1 of 12)	B2_Mm2|SINE|B2	56095.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	9.5	22.5	20.5	10.5	33.5	21.0
Merged-chr6-87451221-3	chr6	87450710	87451710	+	620.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22216.0	NM_009756	12154.0	Mm.483321	NM_009756	ENSMUSG00000030046	Bmp10	b2b2711Clo	bone morphogenetic protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127119817-2	chr7	127119317	127120317	+	620.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_133686, intron 1 of 3)	intron (NM_133686, intron 1 of 3)	2212.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161864013-2	chr1	161863569	161864569	+	620.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_151684, intron 1 of 24)	intron (NR_151684, intron 1 of 24)	12613.0	NM_172645	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	20.0	57.5	22.0	14.5	24.0	12.0
Merged-chr3-101605300-2	chr3	101604800	101605800	+	620.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144900)	promoter-TSS (NM_144900)	-593.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99688949-3	chr15	99688461	99689461	+	620.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009597, intron 3 of 11)	intron (NM_009597, intron 3 of 11)	-3263.0	NM_001289791	11419.0	Mm.440107	NM_009597	ENSMUSG00000023017	Asic1	AI843610|ASIC|ASIC1a|Accn2|B530003N02Rik|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding	11.0	0.0	0.5	3.5	0.0	0.0
Merged-chr7-68656551-3	chr7	68656056	68657056	+	620.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	38100.0	NR_003648	384639.0	Mm.261760	NM_001013781		Gm5334	EG384639	tetraspanin 7 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94594425-3	chr8	94593951	94594951	+	620.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028221, intron 1 of 7)	intron (NM_028221, intron 1 of 7)	7275.0	NM_028221	102122.0	Mm.250425	NM_028221	ENSMUSG00000031774	Fam192a	1700001O11Rik|2310065K24Rik|AI596259|Nip30	family with sequence similarity 192, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40652924-1	chr9	40652424	40653424	+	620.666687	f1_balb.idr	Intergenic	RMER17A|LTR|ERVK	-33040.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	0.0	4.0	6.0	1.0	1.5	0.0
Merged-chr7-25240311-2	chr7	25239811	25240811	+	620.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2460.0	NM_001031667	606496.0	Mm.491101	NM_001031667	ENSMUSG00000057177	Gsk3a	2700086H06Rik	glycogen synthase kinase 3 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34856011-2	chr17	34855511	34856511	+	620.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001142706)	TTS (NM_001142706)	1621.0	NR_105938	102465587.0		NR_105938	ENSMUSG00000098445	Mir6972	Gm27810|mmu-mir-6972	microRNA 6972	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62579002-2	chr10	62578502	62579502	+	620.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028197)	promoter-TSS (NM_028197)	-545.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129179966-2	chr6	129179454	129180454	+	620.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053109)	promoter-TSS (NM_053109)	-661.0	NM_053109	93694.0	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	21.0	27.5	9.0	22.0	31.5	11.5
Merged-chr8-117336923-2	chr8	117336423	117337423	+	620.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-12247.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30708590-2	chr14	30708090	30709090	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6259.0	NM_019460	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	0.0	0.0	1.0	4.0	0.0	0.0
Merged-chr3-116255928-2	chr3	116255428	116256428	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2444.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44566204-2	chr9	44565704	44566704	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-38688.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	2.5	3.5	5.5	1.0	0.0	0.5
Merged-chr16-4791600-2	chr16	4791100	4792100	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR40|LTR|ERVK	-1308.0	NM_001358082	66626.0	Mm.157648	NM_025670	ENSMUSG00000004071	Cdip1	2700048O17Rik|5730403B10Rik|AU018521|AW742692|CDIP	cell death inducing Trp53 target 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-6728015-2	chr18	6727515	6728515	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-37152.0	NM_181070	19330.0	Mm.132802	NM_181070	ENSMUSG00000073639	Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56356711-2	chr19	56356211	56357211	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198059, intron 20 of 40)	intron (NM_198059, intron 20 of 40)	33327.0	NM_198059	18175.0	Mm.386769	NM_008733	ENSMUSG00000049134	Nrap	-	nebulin-related anchoring protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48318154-2	chr17	48317654	48318654	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177083, intron 2 of 5)	MTE2b|LTR|ERVL-MaLR	1992.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	4.0	3.0	4.5	9.0	2.0	8.0
Merged-chr17-64564002-2	chr17	64563502	64564502	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8412.0	NR_045899	100043582.0	Mm.11170	NR_045899	ENSMUSG00000073377	AU016765	-	expressed sequence AU016765	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146329057-2	chr3	146328557	146329557	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	49887.0	NR_033542	100038607.0	Mm.365888	NR_033542	ENSMUSG00000105602	Gm10636	-	predicted gene 10636	ncRNA	3.0	0.0	3.0	2.0	4.0	7.0
Merged-chr10-84315201-2	chr10	84314701	84315701	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	125270.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-16481944-2	chr5	16481444	16482444	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71551.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14886451-2	chr8	14885951	14886951	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-2085.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-82768742-2	chr6	82768242	82769242	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 1 of 17)	intron (NM_013820, intron 1 of 17)	5712.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	4.5	6.0	0.5	4.5	4.5	0.5
Merged-chr9-90273921-2	chr9	90273421	90274421	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3152.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	80.5	163.0	155.0	23.5	44.0	39.0
Merged-chr6-58669875-2	chr6	58669375	58670375	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355477, intron 7 of 15)	RMER13B|LTR|ERVK	73203.0	NM_011920	26357.0	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57122709-2	chr16	57122209	57123209	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138599, intron 1 of 11)	intron (NM_138599, intron 1 of 11)	995.0	NM_138599	28185.0	Mm.196933	NM_138599	ENSMUSG00000022752	Tomm70a	2610044B22Rik|D16Ium22|D16Ium22e|D16Wsu109e|Tom70|Tomm70|mKIAA0719	translocase of outer mitochondrial membrane 70A	protein-coding	25.0	36.5	28.5	31.5	35.0	21.5
Merged-chr16-18463323-2	chr16	18462823	18463823	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001353143, intron 11 of 16)	intron (NM_001353143, intron 11 of 16)	-35390.0	NM_001081682	13972.0	Mm.236139	NM_023120	ENSMUSG00000000884	Gnb1l	ESTM55|Gm16314|Me49f07|Wdr14|Wdvcf	guanine nucleotide binding protein (G protein), beta polypeptide 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57690955-2	chr15	57690455	57691455	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie1|DNA|hAT-Charlie	-3712.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111336045-2	chr10	111335545	111336545	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37366.0	NM_027914	71769.0	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27102871-2	chr17	27102371	27103371	+	620.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_080553, exon 25 of 58)	exon (NM_080553, exon 25 of 58)	11626.0	NR_106142	102465779.0		NR_106142	ENSMUSG00000098826	Mir7677	Gm27400|mmu-mir-7677	microRNA 7677	ncRNA	0.0	9.0	1.5	0.0	0.0	0.0
Merged-chr3-8668884-2	chr3	8668384	8669384	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1846.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32671936-2	chr9	32671436	32672436	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24106.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	5.5	2.5	1.5	2.0	1.0	0.0
Merged-chr12-31920847-2	chr12	31920347	31921347	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163126, intron 21 of 22)	intron (NM_001163126, intron 21 of 22)	29398.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	3.0	4.5	10.0	1.5	4.0	6.0
Merged-chr11-116196704-2	chr11	116196202	116197202	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271898, intron 2 of 13)	ID|SINE|ID	-2153.0	NM_027107	69535.0	Mm.390347	NM_027107	ENSMUSG00000020778	Ten1	2310004N24Rik	TEN1 telomerase capping complex subunit	protein-coding	8.0	14.5	8.5	3.5	14.0	9.0
Merged-chr18-88175097-2	chr18	88174597	88175597	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	719110.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32073550-2	chr5	32073037	32074037	+	620.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 11 of 11)	intron (NM_144541, intron 11 of 11)	-62935.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	6.5	1.5	3.0	0.5	3.0	3.0
Merged-chr10-118871683-2	chr10	118871183	118872183	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31D_MM|LTR|ERVK	-2780.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152126933-2	chr4	152126433	152127433	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207689, intron 7 of 9)	intron (NM_207689, intron 7 of 9)	1992.0	NM_019585	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60870693-2	chr2	60870193	60871193	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	10745.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117873497-2	chr5	117872997	117873997	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 1 of 27)	B1_Mus1|SINE|Alu	6658.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97389758-2	chr6	97389249	97390249	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	intron (NM_145148, intron 6 of 23)	69537.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	3.5	5.5	2.5	4.0	3.0	7.5
Merged-chr18-68859809-1	chr18	68859309	68860309	+	620.5	f0_balb.idr	Intergenic	Intergenic	91719.0	NR_038051	78931.0	Mm.160155	NR_038051		4930546C10Rik	-	RIKEN cDNA 4930546C10 gene	ncRNA	3.0	0.0	0.0	0.0	3.0	0.5
Merged-chr10-118600343-4	chr10	118599891	118600891	+	620.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43866.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	85.5	109.0	128.5	59.5	151.0	121.0
Merged-chr3-35931494-2	chr3	35931003	35932003	+	620.5	f0_balb.idr|f0_c57.idr	intron (NM_001205361, intron 1 of 6)	intron (NM_001205361, intron 1 of 6)	831.0	NM_001205362	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73919293-2	chr13	73918793	73919793	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027182, intron 9 of 12)	intron (NM_027182, intron 9 of 12)	18474.0	NM_027182	69716.0	Mm.275095	NM_027182	ENSMUSG00000021569	Trip13	2410002G23Rik|D13Ertd328e	thyroid hormone receptor interactor 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92678216-2	chr1	92677716	92678716	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29375.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100394805-2	chr11	100394305	100395305	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010593, intron 1 of 13)	intron (NM_010593, intron 1 of 13)	2985.0	NM_010593	16480.0	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27538461-2	chr7	27537961	27538961	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317355, intron 9 of 13)	intron (NM_001317355, intron 9 of 13)	14757.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	0.0	6.5	3.0	0.0	2.0	4.5
Merged-chr11-60835834-2	chr11	60835334	60836334	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172112, intron 1 of 6)	ORR1C1-int|LTR|ERVL-MaLR	5203.0	NM_145428	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64344338-2	chr7	64343838	64344838	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	29757.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21686319-2	chr16	21685819	21686819	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001881, intron 1 of 1)	L1_Mur3|LINE|L1	8346.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-65394630-1	chr16	65394130	65395130	+	620.5	f0_balb.idr	Intergenic	Intergenic	-125999.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	5.0	2.0	4.0	1.0	5.5	0.0
Merged-chr10-58444696-2	chr10	58444196	58445196	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C-int|LTR|ERVK	-2156.0	NM_011240	19386.0	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12370325-2	chr17	12369825	12370825	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8284.0	NM_008877	18815.0	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-52625611-2	chr12	52625111	52626111	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23289.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr15-78804421-2	chr15	78803940	78804940	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-1398.0	NM_130859	105844.0	Mm.17629	NM_130859	ENSMUSG00000033170	Card10	AI449026|Bimp1|Carma3	caspase recruitment domain family, member 10	protein-coding	0.0	1.0	1.0	4.0	0.0	0.0
Merged-chr5-114804720-2	chr5	114804220	114805220	+	620.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026718, exon 15 of 15)	3' UTR (NM_026718, exon 15 of 15)	9256.0	NR_027818	66236.0	Mm.268546	NR_027817	ENSMUSG00000072694	1500011B03Rik	AI415201|AV141149|AW556386	RIKEN cDNA 1500011B03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131224250-2	chr2	131223750	131224750	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	-9813.0	NM_001206383	228607.0	Mm.287226	NM_144888	ENSMUSG00000037523	Mavs	D430028G21Rik|IPS-1|Visa|cardif	mitochondrial antiviral signaling protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43751400-2	chr19	43750880	43751880	+	620.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_144874, exon 2 of 9)	exon (NM_144874, exon 2 of 9)	1620.0	NM_144874	226139.0	Mm.248237	NM_144874	ENSMUSG00000040018	Cox15	2900026G05Rik	cytochrome c oxidase assembly protein 15	protein-coding	0.0	0.0	0.0	4.5	0.0	0.0
Merged-chr5-139283902-2	chr5	139283402	139284402	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	30405.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-32888678-1	chr14	32888178	32889178	+	620.5	f0_balb.idr	intron (NM_178791, intron 3 of 7)	intron (NM_178791, intron 3 of 7)	31922.0	NM_001361602	320736.0	Mm.187910	NM_178791	ENSMUSG00000050666	Vstm4	E130203B14Rik	V-set and transmembrane domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-86985286-2	chr16	86984786	86985786	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	143153.0	NR_153792	102635567.0	Mm.233725	NR_153792		Gm32865	-	predicted gene, 32865	ncRNA	0.0	0.0	0.5	0.0	0.0	1.0
Merged-chr5-92463181-2	chr5	92462681	92463681	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 2 of 11)	intron (NM_007644, intron 2 of 11)	4624.0	NR_105843	102466159.0		NR_105843	ENSMUSG00000099160	Mir6415	Gm27714|mmu-mir-6415	microRNA 6415	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139027155-2	chr5	139026655	139027655	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359099, intron 9 of 10)	PB1D10|SINE|Alu	-32202.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97328343-2	chr11	97327838	97328838	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025927, intron 7 of 7)	intron (NM_025927, intron 7 of 7)	12622.0	NM_025927	67036.0	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	4.0	9.5	0.0	10.0	2.0	0.0
Merged-chr4-21814211-2	chr4	21813711	21814711	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_152825, intron 10 of 17)	B1_Mur2|SINE|Alu	-33372.0	NM_025669	66625.0	Mm.100117	NM_025669	ENSMUSG00000028248	Pnisr	5730406M06Rik|AA673174|Pinsr|Sfrs18|Srsf18	PNN interacting serine/arginine-rich	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31372569-2	chr14	31372069	31373069	+	620.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360187)	TTS (NM_001360187)	35931.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120151201-2	chr6	120150701	120151701	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	ORR1F|LTR|ERVL-MaLR	-42622.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-48870420-2	chr11	48869920	48870920	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008326, intron 1 of 2)	intron (NM_008326, intron 1 of 2)	1000.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28596740-2	chr7	28596240	28597240	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027470, intron 1 of 9)	intron (NM_027470, intron 1 of 9)	1444.0	NM_027470	70584.0	Mm.21876	NM_027470	ENSMUSG00000030602	Pak4	5730488L07Rik|AW555722|mKIAA1142	p21 (RAC1) activated kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86045637-2	chr12	86045137	86046137	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081423, intron 33 of 33)	intron (NM_001081423, intron 33 of 33)	33404.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108662820-5	chr6	108662327	108663327	+	620.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011498, intron 4 of 4)	intron (NM_011498, intron 4 of 4)	-1893.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-97764802-2	chr4	97764292	97765292	+	620.5	f0_balb.idr|f0_c57.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-12834.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16100687-2	chr1	16100187	16101187	+	620.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011291)	TTS (NM_011291)	3746.0	NM_011291	19989.0	Mm.319659	NM_011291	ENSMUSG00000043716	Rpl7	Rpl7a|Surf-3	ribosomal protein L7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-89114231-2	chr17	89113731	89114731	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013523, intron 1 of 9)	intron (NM_013523, intron 1 of 9)	86444.0	NM_013523	14309.0	Mm.57155	NM_013523	ENSMUSG00000032937	Fshr	-	follicle stimulating hormone receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36042212-2	chr17	36041678	36042678	+	620.375	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034909)	promoter-TSS (NM_001034909)	514.0	NM_010399	15051.0	Mm.195061	NM_010399		H2-T9	H-2T9	histocompatibility 2, T region locus 9	protein-coding	26.0	19.5	9.0	18.5	20.0	18.5
Merged-chr11-108221750-2	chr11	108221250	108222250	+	620.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	122138.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126682340-2	chr4	126681840	126682840	+	620.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011970, intron 1 of 5)	intron (NM_011970, intron 1 of 5)	4697.0	NM_011970	26445.0	Mm.22233	NM_011970	ENSMUSG00000028837	Psmb2	AU045357|AW108089|C7-I|D4Wsu33e|HC7-I	proteasome (prosome, macropain) subunit, beta type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47617774-2	chr9	47617207	47618207	+	620.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	ID4|SINE|ID	87355.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	7.5	13.5	14.5	10.5	10.5	9.5
Merged-chr11-67648068-2	chr11	67647576	67648576	+	620.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109657, intron 4 of 13)	intron (NM_001109657, intron 4 of 13)	-47250.0	NM_009038	19674.0	Mm.439726	NM_009038	ENSMUSG00000020907	Rcvrn	CAR|S-modulin	recoverin	protein-coding	0.5	1.5	0.0	7.0	1.0	1.0
Merged-chr11-55209888-3	chr11	55209360	55210360	+	620.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153139, intron 1 of 10)	intron (NM_153139, intron 1 of 10)	5520.0	NM_153139	215335.0	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-67716921-3	chr14	67716399	67717399	+	620.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111028, intron 1 of 11)	intron (NM_001111028, intron 1 of 11)	801.0	NM_001285933	105440.0	Mm.6720	NM_134073	ENSMUSG00000034327	Kctd9	-	potassium channel tetramerisation domain containing 9	protein-coding	0.0	1.5	0.0	0.0	0.0	1.0
Merged-chr5-96966366-3	chr5	96965864	96966864	+	620.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31325.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	3.0	6.0	2.0	1.5	1.0	5.0
Merged-chr11-85706768-3	chr11	85706268	85707268	+	620.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045875, exon 2 of 6)	non-coding (NR_045875, exon 2 of 6)	12976.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141170697-2	chr7	141170197	141171197	+	620.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172100, intron 1 of 9)	intron (NM_001172100, intron 1 of 9)	-1761.0	NM_145135	107702.0	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-82166361-2	chr12	82165861	82166861	+	620.299988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3655.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145268941-2	chr4	145268441	145269441	+	620.299988	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009401)	TTS (NM_009401)	-22071.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46004097-2	chr19	46003597	46004597	+	620.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_176785, exon 1 of 1)	exon (NM_176785, exon 1 of 1)	619.0	NM_176785	20170.0	Mm.101110	NM_176785	ENSMUSG00000074811	Hps6	5330434M19Rik|BLOC2|ru	HPS6, biogenesis of lysosomal organelles complex 2 subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-18277647-3	chr9	18277154	18278154	+	620.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14613.0	NM_025844	66917.0	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84391014-3	chr3	84390525	84391525	+	620.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-11104.0	NR_040752	75309.0	Mm.159497	NR_040752	ENSMUSG00000104004	4930565D16Rik	-	RIKEN cDNA 4930565D16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-136489193-4	chr7	136488692	136489692	+	620.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139777.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-92635865-3	chr13	92635354	92636354	+	620.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172588, intron 1 of 11)	ORR1D1|LTR|ERVL-MaLR	24716.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34149266-3	chr13	34148794	34149794	+	620.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13670.0	NM_001101430	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-60255400-2	chr14	60254900	60255900	+	620.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3921.0	NM_001362439	71844.0	Mm.258051	NM_170591	ENSMUSG00000114797	Nupl1	1700017F11Rik|Nup58|mKIAA0410	nucleoporin like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92919341-2	chr1	92918841	92919841	+	620.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_181405, intron 10 of 10)	intron (NM_181405, intron 10 of 10)	8516.0	NM_181405	108657.0	Mm.200971	NM_181405	ENSMUSG00000026269	Rnpepl1	1110014H17Rik|AI894167	arginyl aminopeptidase (aminopeptidase B)-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4600216-2	chr2	4599716	4600716	+	620.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 7 of 11)	intron (NM_001177844, intron 7 of 11)	40462.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170174768-3	chr2	170174233	170175233	+	620.077759	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32058.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-96631922-2	chr5	96631422	96632422	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175473, intron 20 of 73)	B2_Mm2|SINE|B2	-161463.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	2.5	8.0	0.0	4.5	0.0	0.0
Merged-chr17-67171496-2	chr17	67170996	67171996	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 2 of 32)	intron (NM_001357625, intron 2 of 32)	-145261.0	NR_049205	100885844.0		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118923053-1	chr2	118922553	118923553	+	620.0	f0_balb.idr	3' UTR (NM_001045523, exon 7 of 7)	3' UTR (NM_001045523, exon 7 of 7)	-3444.0	NM_028117	72136.0	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	0.5	1.5	3.5	0.0	1.0	2.0
Merged-chr7-4431685-2	chr7	4431185	4432185	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290409, intron 3 of 5)	B3|SINE|B2	13972.0	NM_175372	108841.0	Mm.413106	NM_175372	ENSMUSG00000008435	Rdh13	8430425D21Rik	retinol dehydrogenase 13 (all-trans and 9-cis)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94282064-2	chr13	94281564	94282564	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346609, intron 1 of 8)	intron (NM_001346609, intron 1 of 8)	3217.0	NM_029153	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9900924-2	chr19	9900424	9901424	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A1|LTR|ERVL-MaLR	-1391.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr7-45441609-2	chr7	45441109	45442109	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030678, intron 5 of 15)	intron (NM_030678, intron 5 of 15)	6770.0	NM_030678	14936.0	Mm.275654	NM_030678	ENSMUSG00000003865	Gys1	Gys3|MGS	glycogen synthase 1, muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-31743204-2	chr9	31742704	31743704	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_I-int|LTR|ERV1	170081.0	NM_013800	12023.0	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-60480413-1	chr3	60479913	60480913	+	620.0	f1_c57bl6.idr	intron (NM_001253713, intron 2 of 9)	intron (NM_001253713, intron 2 of 9)	7583.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	1.0	9.0	3.0	10.5	7.0	3.0
Merged-chr10-80064129-2	chr10	80063629	80064629	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359635, intron 16 of 31)	intron (NM_001359635, intron 16 of 31)	10110.0	NM_001037741	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-16490859-2	chr2	16490359	16491359	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026162, intron 1 of 13)	intron (NM_026162, intron 1 of 13)	134555.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148709638-3	chr4	148709132	148710132	+	620.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	66315.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	0.0	0.0	0.0	7.5	2.5	6.0
Merged-chr5-74070837-2	chr5	74070288	74071288	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-2377.0	NM_177561	69727.0	Mm.48795	NM_177561	ENSMUSG00000054814	Usp46	1190009E20Rik|2410018I08Rik|AI451644	ubiquitin specific peptidase 46	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51999376-2	chr11	51998876	51999876	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009458, intron 1 of 5)	intron (NM_009458, intron 1 of 5)	1090.0	NM_009458	22210.0	Mm.384918	NM_009458	ENSMUSG00000020390	Ube2b	E2-14k|HR6B|Rad6b|mHR6B	ubiquitin-conjugating enzyme E2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118877828-2	chr9	118877328	118878328	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 12 of 13)	intron (NM_001113514, intron 12 of 13)	-48708.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	4.0	5.0	3.5	0.0	9.5	1.5
Merged-chr6-148458606-2	chr6	148458106	148459106	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14254.0	NM_001347518	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109418108-1	chr11	109417608	109418608	+	620.0	f1_balb.idr	Intergenic	Intergenic	-7838.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	0.0	10.5	3.5	0.0	1.5	7.5
Merged-chr10-75255281-2	chr10	75254781	75255781	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153406, intron 5 of 15)	intron (NM_153406, intron 5 of 15)	42891.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102149117-2	chr15	102148617	102149617	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008344, intron 3 of 3)	intron (NM_008344, intron 3 of 3)	-1458.0	NM_146064	223920.0	Mm.358862	NM_146064	ENSMUSG00000023045	Soat2	ACAT2|D15Wsu97e	sterol O-acyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-41869644-2	chr7	41869144	41870144	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001105055, intron 1 of 5)	Lx|LINE|L1	3026.0	NM_001105055	628422.0	Mm.469902	NM_001105055	ENSMUSG00000090383	Vmn2r58	EG628422	vomeronasal 2, receptor 58	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-110909352-2	chr8	110908852	110909852	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-6864.0	NR_052009	234730.0	Mm.102591	NM_172283	ENSMUSG00000033703	Fuk	1110046B12Rik|AI303278	fucokinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125815830-1	chr8	125815330	125816330	+	620.0	f0_balb.idr	exon (NM_175561, exon 21 of 34)	exon (NM_175561, exon 21 of 34)	81627.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47834320-2	chr17	47833820	47834820	+	620.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001109973, exon 1 of 5)	5' UTR (NM_001109973, exon 1 of 5)	371.0	NM_001109973	17240.0	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-62351810-2	chr14	62351310	62352310	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026001, intron 4 of 10)	intron (NM_026001, intron 4 of 10)	19742.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83976288-1	chr8	83975788	83976788	+	620.0	f1_c57bl6.idr	promoter-TSS (NM_001277898)	promoter-TSS (NM_001277898)	-595.0	NM_001277898	18747.0	Mm.19111	NM_008854	ENSMUSG00000005469	Prkaca	PKCD|Pkaca	protein kinase, cAMP dependent, catalytic, alpha	protein-coding	0.0	0.0	0.0	0.0	2.5	3.0
Merged-chr13-107934031-2	chr13	107933531	107934531	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID|SINE|ID	-43967.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.0	2.0	2.5	1.5	0.0	0.0
Merged-chr4-53037694-2	chr4	53037194	53038194	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 46 of 49)	intron (NM_013454, intron 46 of 49)	25814.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93311343-2	chr10	93310844	93311844	+	620.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013508)	promoter-TSS (NM_013508)	-185.0	NM_001322265	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	3.0	5.5	3.5	3.5	11.5	7.0
Merged-chr15-80007252-1	chr15	80006752	80007752	+	620.0	f0_balb.idr	intron (NM_011057, intron 1 of 6)	MTD|LTR|ERVL-MaLR	7556.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	4.0	12.0	8.5	13.0	18.5	23.0
Merged-chr13-99351254-2	chr13	99350754	99351754	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173757, intron 2 of 10)	intron (NM_173757, intron 2 of 10)	6468.0	NM_173757	218506.0	Mm.30208	NM_173757	ENSMUSG00000041632	Mrps27	2610028H14Rik	mitochondrial ribosomal protein S27	protein-coding	0.0	5.5	8.0	0.0	0.0	2.0
Merged-chr6-128316618-2	chr6	128316118	128317118	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-15805.0	NM_011567	21679.0	Mm.14774	NM_011567	ENSMUSG00000030353	Tead4	ETFR-2|Etfr2|FR-19|Rtef1|TEAD-4|TEF-3|Tcf13r1|Tef3|Tefr|Tefr1|Tefr1a	TEA domain family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-157310860-1	chr1	157310360	157311360	+	620.0	f1_balb.idr	intron (NM_177644, intron 1 of 17)	ORR1C2|LTR|ERVL-MaLR	-101492.0	NR_027984	69953.0	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	11.5	9.0	0.0	0.0	2.5	1.0
Merged-chr7-63931745-2	chr7	63931245	63932245	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	7170.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	20.0	25.0	8.0	12.0	16.0	6.5
Merged-chr4-143241613-1	chr4	143241113	143242113	+	620.0	f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-28904.0	NM_001256380	110593.0	Mm.332020	NM_001081355	ENSMUSG00000057637	Prdm2	4833427P12Rik|E330024L24Rik|Gm1033|Gm19732|KMT8|Riz|Riz1|Znfpr1c1	PR domain containing 2, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58244317-1	chr15	58243817	58244817	+	620.0	f0_balb.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-29425.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-20466545-3	chr1	20466022	20467022	+	620.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153179, intron 35 of 66)	intron (NM_153179, intron 35 of 66)	110068.0	NR_045734	75028.0	Mm.417820	NR_045734	ENSMUSG00000089914	4930486I03Rik	-	RIKEN cDNA 4930486I03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95638631-2	chr3	95638131	95639131	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	13651.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-17460122-2	chr11	17459622	17460622	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	202434.0	NM_001330649	57316.0	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38072248-1	chr2	38071748	38072748	+	620.0	f0_balb.idr	intron (NM_146122, intron 5 of 21)	intron (NM_146122, intron 5 of 21)	215136.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77468282-1	chr18	77467782	77468782	+	620.0	f1_balb.idr	exon (NM_001164504, exon 4 of 8)	exon (NM_001164504, exon 4 of 8)	96854.0	NM_001164504	225743.0	Mm.23293	NM_001164504	ENSMUSG00000025427	Rnf165	2900024M11Rik|AI427432|Akd2|Ark2c|G630064H08Rik|Gm96	ring finger protein 165	protein-coding	0.0	1.0	4.0	0.0	1.0	0.0
Merged-chr11-74523333-2	chr11	74522833	74523833	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	CpG	66825.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120539307-2	chr2	120538807	120539807	+	620.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011743, exon 4 of 22)	exon (NM_011743, exon 4 of 22)	24552.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-55593021-2	chr3	55592521	55593521	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131293.0	NM_001357476	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156300112-2	chr2	156299625	156300625	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172674, intron 15 of 17)	L1MB2|LINE|L1	-12348.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	1.0	5.0	5.0	3.0	2.5	4.5
Merged-chr3-148246969-2	chr3	148246469	148247469	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	707666.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5555074-2	chr17	5554574	5555574	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	ORR1D1|LTR|ERVL-MaLR	62474.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80050415-2	chr10	80049915	80050915	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110342, intron 2 of 6)	intron (NR_110342, intron 2 of 6)	-3073.0	NM_008162	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60718806-2	chr18	60718306	60719306	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	8760.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0.0	3.5	6.5	3.0	5.0	1.0
Merged-chr6-115908759-1	chr6	115908259	115909259	+	620.0	f0_balb.idr	intron (NM_001167763, intron 17 of 28)	intron (NM_001167763, intron 17 of 28)	-23168.0	NM_145383	212541.0	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103890003-2	chr14	103889503	103890503	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-45527.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-144015451-2	chr5	144014951	144015951	+	620.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177682)	promoter-TSS (NM_177682)	-598.0	NM_177682	231874.0	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	0.0	12.0	10.5	0.0	11.5	9.5
Merged-chr10-112141341-2	chr10	112140841	112141841	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22280.0	NM_001310675	353025.0	Mm.194428	NM_178278	ENSMUSG00000035694	Caps2	D630005B03Rik	calcyphosphine 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114760853-2	chr11	114760353	114761353	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4536.0	NM_001102615	286942.0	Mm.308713	NM_001102615	ENSMUSG00000010021	Kif19a	Kif19	kinesin family member 19A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-37324525-2	chr3	37324025	37325025	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11971.0	NM_001008502	241950.0	Mm.32171	NM_001008502	ENSMUSG00000051444	Bbs12	Gm1805|Gm407|Gm721	Bardet-Biedl syndrome 12 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41369348-1	chr19	41368848	41369848	+	620.0	f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	15722.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	8.0	13.5	11.5	32.0	19.0	32.5
Merged-chr16-73431923-2	chr16	73431423	73432423	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	768774.0	NM_019413	19876.0	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21075269-2	chr14	21074769	21075769	+	620.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243041)	promoter-TSS (NM_001243041)	-883.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	5.5	5.0	0.0	0.0	2.0	1.0
Merged-chr7-44866978-2	chr7	44866476	44867476	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133949, intron 4 of 11)	intron (NM_133949, intron 4 of 11)	2812.0	NM_133949	84113.0	Mm.42855	NM_133949	ENSMUSG00000038502	Ptov1	1110030G05Rik|AU041779|Gcap3	prostate tumor over expressed gene 1	protein-coding	6.0	4.5	7.0	2.0	1.0	3.5
Merged-chr8-105302017-2	chr8	105301517	105302517	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_148952, intron 7 of 9)	intron (NM_148952, intron 7 of 9)	-3584.0	NM_172760	234683.0	Mm.237966	NM_172760	ENSMUSG00000014791	Elmo3	9930107J06|BC058752|CED-12|Ced12	engulfment and cell motility 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73781574-2	chr12	73781074	73782074	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119750.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129528076-1	chr2	129527576	129528576	+	620.0	f1_c57bl6.idr	intron (NM_177653, intron 1 of 6)	intron (NM_177653, intron 1 of 6)	8526.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	3.5	0.0	1.0	5.5	4.0	0.0
Merged-chr1-93654171-1	chr1	93653671	93654671	+	620.0	f0_balb.idr	Intergenic	MT2B1|LTR|ERVL	-18444.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	0.0	0.0	0.0	0.0	4.0	0.0
Merged-chr4-109058698-1	chr4	109058198	109059198	+	620.0	f1_c57bl6.idr	intron (NM_146150, intron 26 of 30)	intron (NM_146150, intron 26 of 30)	41043.0	NR_030432	791075.0		NR_030432	ENSMUSG00000076444	Mir761	Mirn761|mir-761|mmu-mir-761	microRNA 761	ncRNA	17.0	4.5	5.0	3.0	1.5	7.0
Merged-chr12-4386161-2	chr12	4385661	4386661	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010881, intron 2 of 22)	intron (NM_010881, intron 2 of 22)	91021.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88209772-2	chr17	88209272	88210272	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	84260.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167073136-2	chr2	167072636	167073636	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	7843.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-76303131-2	chr5	76302631	76303631	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007715, intron 2 of 22)	intron (NM_007715, intron 2 of 22)	371.0	NM_001305222	12753.0	Mm.3552	NM_007715	ENSMUSG00000029238	Clock	5330400M04Rik|KAT13D	circadian locomotor output cycles kaput	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-53115243-2	chr2	53114743	53115743	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 17 of 26)	intron (NM_172409, intron 17 of 26)	75944.0	NM_018785	56194.0	Mm.257474	NM_018785	ENSMUSG00000061136	Prpf40a	2810012K09Rik|FBP-11|FBP11|Fnbp11|Fnbp3	pre-mRNA processing factor 40A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27115259-1	chr14	27114759	27115759	+	620.0	f1_c57bl6.idr	Intergenic	Intergenic	-28734.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	27.0	36.5	28.5	15.0	39.5	26.5
Merged-chr13-101844611-3	chr13	101844105	101845105	+	620.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76388.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29250288-2	chr19	29249788	29250788	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1515.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69210239-1	chr8	69209739	69210739	+	620.0	f1_c57bl6.idr	intron (NM_001013379, intron 1 of 3)	intron (NM_001013379, intron 1 of 3)	1193.0	NM_001013379	234358.0	Mm.334577	NM_001013379	ENSMUSG00000059897	Zfp930	-	zinc finger protein 930	protein-coding	1.0	3.0	6.5	2.5	8.0	4.5
Merged-chr7-97453283-2	chr7	97452783	97453783	+	620.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001010826)	promoter-TSS (NM_001010826)	79.0	NM_001012434	233529.0	Mm.334033	NM_001010826	ENSMUSG00000051727	Kctd14	AI449310|D7Ertd760e	potassium channel tetramerisation domain containing 14	protein-coding	5.0	0.0	5.5	7.5	0.0	1.0
Merged-chr6-89327161-2	chr6	89326661	89327661	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008881, intron 23 of 31)	intron (NM_008881, intron 23 of 31)	35452.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89247540-2	chr3	89247040	89248040	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310625, intron 3 of 4)	intron (NM_001310625, intron 3 of 4)	1067.0	NM_001310625	66059.0	Mm.177991	NM_025327	ENSMUSG00000042747	Krtcap2	0610010I12Rik|Kcp2	keratinocyte associated protein 2	protein-coding	1.0	11.0	2.5	0.0	2.5	3.0
Merged-chr8-90914163-1	chr8	90913663	90914663	+	620.0	f0_balb.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	-18086.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	13.5	15.0	6.5	9.5	17.0	18.0
Merged-chr8-72312414-1	chr8	72311914	72312914	+	620.0	f1_c57bl6.idr	Intergenic	Intergenic	-6648.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	0.5	10.5	5.5	26.5	8.0	4.0
Merged-chr19-5913405-2	chr19	5912905	5913905	+	620.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291078)	promoter-TSS (NM_001291078)	-534.0	NM_001291078	19708.0	Mm.2651	NM_011262	ENSMUSG00000024826	Dpf2	2210010M07Rik|BAF45D|Req|ubi-d4	D4, zinc and double PHD fingers family 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55164017-2	chr1	55163517	55164517	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32772.0	NM_025283	19070.0	Mm.291037	NM_025283	ENSMUSG00000025979	Mob4	2610109B12Rik|Mobkl3|Phocn|Prei3	MOB family member 4, phocein	protein-coding	0.0	0.0	0.0	3.5	3.5	0.0
Merged-chr10-52422615-2	chr10	52422115	52423115	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030250, intron 1 of 4)	intron (NM_030250, intron 1 of 4)	5068.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56011981-2	chr17	56011481	56012481	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026530, intron 6 of 12)	intron (NM_026530, intron 6 of 12)	2780.0	NM_026530	68047.0	Mm.358710	NM_026530	ENSMUSG00000003199	Mpnd	E130307M08Rik	MPN domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-72807226-2	chr9	72806726	72807726	+	620.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175485)	promoter-TSS (NM_175485)	-48.0	NM_175485	235472.0	Mm.31696	NM_175485	ENSMUSG00000036030	Prtg	A230098A12Rik|Igdcc5	protogenin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-33902628-1	chr8	33902128	33903128	+	620.0	f0_c57.idr	intron (NM_001042675, intron 1 of 6)	intron (NM_001042675, intron 1 of 6)	27235.0	NM_019733	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	9.5	8.0	7.5	0.0	1.0	6.5
Merged-chr17-25796665-2	chr17	25796165	25797165	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133719, intron 1 of 3)	CpG	380.0	NM_133719	70083.0	Mm.41925	NM_133719	ENSMUSG00000002274	Metrn	1810034B16Rik|EyeLinc16|Hyrac	meteorin, glial cell differentiation regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167677474-2	chr2	167676974	167677974	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-11441.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59444204-1	chr4	59443704	59444704	+	620.0	f0_balb.idr	Intergenic	ID4|SINE|ID	-5571.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	1.0	3.5	5.5	2.5	7.0	7.0
Merged-chr11-94346400-2	chr11	94345900	94346900	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 29 of 30)	intron (NM_029600, intron 29 of 30)	18399.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-85636410-2	chr18	85635910	85636910	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger17a|DNA|TcMar-Tigger	-684886.0	NM_025969	67105.0	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	translocase of inner mitochondrial membrane 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44844460-1	chr7	44843960	44844960	+	620.0	f1_balb.idr	intron (NM_001042655, intron 7 of 16)	intron (NM_001042655, intron 7 of 16)	4619.0	NM_001042655	233204.0	Mm.27567	NM_144924	ENSMUSG00000038520	Tbc1d17	BC017607	TBC1 domain family, member 17	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr2-153197285-2	chr2	153196785	153197785	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 12 of 17)	intron (NM_133847, intron 12 of 17)	28156.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-99187770-1	chr11	99187270	99188270	+	620.0	f1_c57bl6.idr	Intergenic	Intergenic	-32693.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0.0	12.5	5.0	0.0	7.0	3.0
Merged-chr19-3948314-2	chr19	3947814	3948814	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019449, intron 10 of 10)	PB1D9|SINE|Alu	-10494.0	NM_028545	73458.0	Mm.482922	NM_028545	ENSMUSG00000037263	Aldh3b3	1700055N04Rik	aldehyde dehydrogenase 3 family, member B3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-16885007-2	chr6	16884507	16885507	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 1 of 6)	intron (NM_031198, intron 1 of 6)	13434.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-79761352-1	chr1	79760852	79761852	+	620.0	f0_balb.idr	intron (NM_027057, intron 1 of 4)	CpG	417.0	NM_001111279	69368.0	Mm.293273	NM_027057	ENSMUSG00000073643	Wdfy1	1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435	WD repeat and FYVE domain containing 1	protein-coding	40.5	120.5	59.0	33.0	124.5	74.0
Merged-chr6-41605329-4	chr6	41604878	41605878	+	619.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146351)	promoter-TSS (NM_001146351)	-104.0	NM_001146351	13848.0	Mm.271976	NM_007680	ENSMUSG00000029869	Ephb6	Cekl|Mep	Eph receptor B6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133129564-2	chr4	133129071	133130071	+	619.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-1062.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	39.0	60.0	27.0	34.5	69.0	40.5
Merged-chr18-50110774-2	chr18	50110282	50111282	+	619.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17419.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	9.0	29.5	19.5	14.0	61.0	46.5
Merged-chr15-57644562-2	chr15	57644062	57645062	+	619.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50105.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6383680-2	chr19	6383180	6384180	+	619.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011224)	promoter-TSS (NM_011224)	-728.0	NM_011224	19309.0	Mm.27806	NM_011224	ENSMUSG00000032648	Pygm	AI115133|PG	muscle glycogen phosphorylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-36383503-2	chr12	36383003	36384003	+	619.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289503, intron 1 of 9)	intron (NM_001289503, intron 1 of 9)	1356.0	NM_001289503	75847.0	Mm.261764	NM_178629	ENSMUSG00000043153	Ispd	4930579E17Rik|AV040780	isoprenoid synthase domain containing	protein-coding	5.5	3.0	2.0	0.0	9.0	9.5
Merged-chr15-10885638-3	chr15	10885075	10886075	+	619.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR50|LTR|ERVL	56524.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128824354-3	chr4	128823881	128824881	+	619.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18269.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44137718-2	chr16	44137218	44138218	+	619.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	1541.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-102714023-2	chr9	102713528	102714528	+	619.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3776.0	NM_019764	56332.0	Mm.21145	NM_019764	ENSMUSG00000032531	Amotl2	AW549739|C79691|Lccp|MASCOT|mKIAA0989	angiomotin-like 2	protein-coding	0.0	0.0	0.0	2.0	3.0	0.5
Merged-chr4-141553668-3	chr4	141553139	141554139	+	619.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	7477.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	1.5	13.5	18.0	2.0	2.0	2.0
Merged-chr8-46470197-2	chr8	46469697	46470697	+	619.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007981)	promoter-TSS (NM_007981)	-840.0	NM_007981	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40899699-3	chr4	40899204	40900204	+	619.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-20352.0	NM_011463	20731.0	Mm.25246	NM_011463	ENSMUSG00000028415	Spink4	MPGC60	serine peptidase inhibitor, Kazal type 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36129334-3	chr17	36128888	36129888	+	619.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177467)	promoter-TSS (NM_001177467)	37.0	NM_001177467	630294.0	Mm.484916	NM_001177467	ENSMUSG00000092243	Gm7030	EG630294|H2-t9	predicted gene 7030	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134607910-3	chr4	134607410	134608410	+	619.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 2 of 11)	intron (NM_207237, intron 2 of 11)	-40059.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152609674-3	chr1	152609151	152610151	+	619.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	15566.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80199170-3	chr7	80198675	80199675	+	619.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	734.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77746577-3	chr9	77746064	77747064	+	619.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7971.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5601750-3	chr13	5601248	5602248	+	619.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	256344.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123510122-2	chr9	123509622	123510622	+	619.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013860, intron 2 of 7)	intron (NM_013860, intron 2 of 7)	-19631.0	NM_001357485	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126840077-2	chr4	126839577	126840577	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035525, intron 13 of 23)	intron (NM_001035525, intron 13 of 23)	86307.0	NM_001035526	100317.0	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-48848637-2	chr11	48848137	48849137	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347446, intron 6 of 6)	intron (NM_001347446, intron 6 of 6)	11166.0	NM_001347446	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76551883-2	chr12	76551383	76552383	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	-3958.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123375436-2	chr8	123374936	123375936	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359076, intron 1 of 16)	B1_Mus1|SINE|Alu	1725.0	NM_001286363	66855.0	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-32512707-2	chr3	32512207	32513207	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356625, intron 1 of 6)	intron (NM_001356625, intron 1 of 6)	2115.0	NM_144519	67778.0	Mm.285620	NM_144519	ENSMUSG00000027667	Zfp639	6230400O18Rik|ANC-2H01|ZASC1|Znf639	zinc finger protein 639	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132526865-2	chr4	132526365	132527365	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	8549.0	NM_007512	11983.0	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-124073761-2	chr1	124073261	124074261	+	619.5	f0_balb.idr|f0_c57.idr	Intergenic	B1_Mur1|SINE|Alu	-28202.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	5.5	30.0	20.5	5.5	30.5	15.0
Merged-chr10-45020966-2	chr10	45020466	45021466	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-46248.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31352384-2	chr15	31351884	31352884	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027496, intron 1 of 3)	intron (NM_027496, intron 1 of 3)	15375.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96390494-2	chr9	96389994	96390994	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-26063.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0.5	8.0	10.5	5.5	4.5	7.0
Merged-chr5-33248675-2	chr5	33248175	33249175	+	619.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001310535, exon 8 of 8)	exon (NM_001310535, exon 8 of 8)	26329.0	NM_001310535	13016.0	Mm.7286	NM_013502	ENSMUSG00000037373	Ctbp1	BARS|CtBP3/BARS|D4S115h|D5H4S115|D5H4S115E	C-terminal binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128983081-2	chr4	128982581	128983581	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-10143.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61518798-2	chr8	61518298	61519298	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 18 of 21)	B1_Mur1|SINE|Alu	31064.0	NM_145595	234309.0	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88067068-2	chr5	88066568	88067568	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-19488.0	NM_001252679	20600.0	Mm.1397	NM_021289	ENSMUSG00000029281	Smr2	MSG2|Vcs2	submaxillary gland androgen regulated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167829879-2	chr2	167829379	167830379	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102448.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133013203-2	chr4	133012703	133013703	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146155, intron 2 of 6)	intron (NM_146155, intron 2 of 6)	1697.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	0.5	0.0	1.5	0.5	0.0	1.5
Merged-chr2-170134196-2	chr2	170133696	170134696	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159683, intron 1 of 6)	intron (NM_001159683, intron 1 of 6)	-2976.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138165406-2	chr5	138164906	138165906	+	619.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029787)	promoter-TSS (NR_029787)	-2.0	NR_029787	723926.0		NR_029787	ENSMUSG00000065394	Mir25	Mirn25|mir-25|mmu-mir-25	microRNA 25	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83814239-2	chr17	83813739	83814739	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 16 of 16)	MTE2a|LTR|ERVL-MaLR	32551.0	NM_025325	107766.0	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8523955-2	chr12	8523455	8524455	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15611.0	NM_001038660	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	1.0	0.5	4.5	2.5	7.0	0.0
Merged-chr9-50583658-2	chr9	50583158	50584158	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B1|LTR|ERVL	20191.0	NM_025848	66925.0	Mm.10406	NM_025848	ENSMUSG00000000171	Sdhd	3110001M13Rik|AVLL5809|C78570|PRO19626	succinate dehydrogenase complex, subunit D, integral membrane protein	protein-coding	2.5	0.5	0.5	0.0	0.5	0.0
Merged-chr4-147421524-2	chr4	147421024	147422024	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	-131753.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124278549-1	chr8	124278049	124279049	+	619.5	f0_balb.idr	intron (NM_139272, intron 1 of 15)	intron (NM_139272, intron 1 of 15)	47155.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	1.0	10.5	9.0	28.5	22.5	2.5
Merged-chr19-5297113-2	chr19	5296613	5297613	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1218.0	NM_001024717	545276.0	Mm.447174	NM_001024717	ENSMUSG00000047658	Gal3st3	-	galactose-3-O-sulfotransferase 3	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr3-36071197-2	chr3	36070697	36071697	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172678, intron 2 of 17)	intron (NM_172678, intron 2 of 17)	5218.0	NM_172678	229211.0	Mm.260997	NM_172678	ENSMUSG00000027710	Acad9	2600017P15Rik|4732402K02|C630012L17Rik|NPD002	acyl-Coenzyme A dehydrogenase family, member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132264278-2	chr4	132263778	132264778	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2729.0	NM_001122992	56809.0	Mm.103489	NM_020273	ENSMUSG00000028901	Gmeb1	1110050A04Rik|AI256615|AI481278	glucocorticoid modulatory element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30550526-2	chr14	30549988	30550988	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009388, intron 1 of 13)	intron (NM_009388, intron 1 of 13)	1357.0	NM_009388	21881.0	Mm.290692	NM_009388	ENSMUSG00000021957	Tkt	p68	transketolase	protein-coding	3.5	36.0	19.5	5.0	20.0	22.0
Merged-chr3-27319999-2	chr3	27319499	27320499	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009425, intron 1 of 4)	intron (NM_009425, intron 1 of 4)	2922.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-102913026-2	chr9	102912574	102913574	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78154.0	NM_001284258	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	0.0	4.0	0.5	0.0	4.0	6.5
Merged-chr17-65672880-2	chr17	65672380	65673380	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 5 of 6)	RLTR13D5|LTR|ERVK	-30676.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-143166207-2	chr6	143165707	143166707	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1023.0	NM_029250	75320.0	Mm.272548	NM_029250	ENSMUSG00000030275	Etnk1	1110061E11Rik|4930555L11Rik|AI195356|AI841245|C80956|D6Ertd3e|EKI1	ethanolamine kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105024242-2	chr3	105023742	105024742	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 3 of 5)	intron (NM_030249, intron 3 of 5)	28711.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78402497-2	chr17	78401997	78402997	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360407, intron 4 of 9)	MLT1B|LTR|ERVL-MaLR	15655.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4228089-2	chr7	4227589	4228589	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9665.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	44.0	95.0	59.0	30.5	47.5	28.5
Merged-chr9-85360768-2	chr9	85360268	85361268	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33618.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144595903-2	chr2	144595403	144596403	+	619.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033297)	TTS (NM_001033297)	1838.0	NM_001033297	228715.0	Mm.27391	NM_001033297	ENSMUSG00000074754	Smim26	Gm561	small integral membrane protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25584871-2	chr2	25584371	25585371	+	619.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001024616, exon 13 of 15)	exon (NM_001024616, exon 13 of 15)	-4772.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-123020297-2	chr7	123019797	123020797	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	49733.0	NM_175023	19647.0	Mm.4480	NM_011247	ENSMUSG00000030779	Rbbp6	4933422O15Rik|AI316869|BB233631|C030034J04Rik|C77662|P2P-R|PACT	retinoblastoma binding protein 6, ubiquitin ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87714357-2	chr16	87713857	87714857	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	15403.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80159051-3	chr7	80158559	80159559	+	619.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27782.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0.0	12.0	2.0	0.5	9.5	6.0
Merged-chr2-119294791-2	chr2	119294291	119295291	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172269, intron 4 of 4)	intron (NM_172269, intron 4 of 4)	6049.0	NM_172269	228545.0	Mm.294761	NM_172269	ENSMUSG00000034216	Vps18	9930024E13Rik	VPS18 CORVET/HOPS core subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr17-32168436-2	chr17	32167936	32168936	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1584.0	NM_008716	18131.0	Mm.439741	NM_008716	ENSMUSG00000038146	Notch3	AW229011|N3|hpbk	notch 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-107582471-2	chr1	107581971	107582971	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR10_RN|LTR|ERVK	-7535.0	NM_011459	20725.0	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19559426-2	chr7	19558926	19559926	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199149, intron 1 of 12)	intron (NM_199149, intron 1 of 12)	2972.0	NM_199149	232947.0	Mm.219662	NM_199149	ENSMUSG00000051403	Ppp1r37	Gm158|Lrrc68	protein phosphatase 1, regulatory subunit 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95852873-2	chr4	95852373	95853373	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113412, intron 14 of 15)	intron (NM_001113412, intron 14 of 15)	114162.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120240386-2	chr14	120239886	120240886	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35283.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-25163978-2	chr5	25163478	25164478	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17502.0	NM_026449	67909.0	Mm.141471	NM_026449	ENSMUSG00000028938	Galntl5	1700021B12Rik|Galnt15	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67202994-2	chr18	67202481	67203481	+	619.5	f0_balb.idr|f1_balb.idr	intron (NM_177137, intron 5 of 11)	intron (NM_177137, intron 5 of 11)	-2378.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	5.0	4.0	2.5	5.5	5.5	5.5
Merged-chr15-88856697-2	chr15	88856197	88857197	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5497.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-48397457-2	chr6	48396957	48397957	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362145, intron 1 of 15)	intron (NM_001362145, intron 1 of 15)	1871.0	NM_001362144	77827.0	Mm.107646	NM_133922	ENSMUSG00000042810	Krba1	A930040G15Rik|AI448780	KRAB-A domain containing 1	protein-coding	0.0	0.0	2.0	3.0	0.0	0.0
Merged-chr2-126468911-2	chr2	126468411	126469411	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 3 of 27)	intron (NM_001359975, intron 3 of 27)	22642.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-61131848-2	chr1	61131348	61132348	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	153934.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54220103-2	chr13	54219603	54220603	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153432, intron 2 of 3)	intron (NR_153432, intron 2 of 3)	27970.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	0.5	2.0	3.0	2.0	2.0	2.0
Merged-chr4-53023807-2	chr4	53023307	53024307	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11927.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-73763096-2	chr18	73762596	73763596	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-8617.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129614973-1	chr2	129614473	129615473	+	619.5	f0_balb.idr	intron (NM_001177647, intron 2 of 5)	intron (NM_001177647, intron 2 of 5)	19511.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.5	12.0	5.5	0.0	7.0	2.5
Merged-chr2-151837769-2	chr2	151837269	151838269	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5158.0	NM_001040689	228770.0	Mm.159868	NM_001040689	ENSMUSG00000032852	Rspo4	A730099F22|A930029K19Rik	R-spondin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5211841-2	chr17	5211341	5212341	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	206926.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90938177-2	chr16	90937677	90938677	+	619.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164483, exon 32 of 32)	3' UTR (NM_001164483, exon 32 of 32)	-3328.0	NM_026502	68001.0	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21908202-2	chr16	21907702	21908702	+	619.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_172821, intron 6 of 12)	Lx5c|LINE|L1	16233.0	NM_172821	71751.0	Mm.420837	NM_172821	ENSMUSG00000033618	Map3k13	C130026N12Rik|LZK	mitogen-activated protein kinase kinase kinase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120561734-2	chr2	120561234	120562234	+	619.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_011743, intron 1 of 21)	intron (NM_011743, intron 1 of 21)	2125.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	12.0	33.0	15.5	1.0	9.5	4.0
Merged-chr3-88153480-2	chr3	88152980	88153980	+	619.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	11108.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66849794-2	chr15	66849294	66850294	+	619.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 47 of 47)	intron (NM_009375, intron 47 of 47)	-17965.0	NM_009192	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64155998-2	chr5	64155498	64156498	+	619.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-4262.0	NM_019636	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.0	1.5	5.0	9.0	0.0	1.0
Merged-chr8-8983316-3	chr8	8982803	8983803	+	619.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	148985.0	NR_045854	71249.0	Mm.158635	NR_045854	ENSMUSG00000108848	4933430N04Rik	-	RIKEN cDNA 4933430N04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138278327-2	chr4	138277827	138278827	+	619.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_010623, intron 5 of 14)	intron (NM_010623, intron 5 of 14)	16076.0	NM_010623	16559.0	Mm.271936	NM_010623	ENSMUSG00000028758	Kif17	5930435E01Rik|AW492270|Kif17b|mKIAA1405	kinesin family member 17	protein-coding	0.0	0.0	0.0	4.0	0.0	0.5
Merged-chr17-84082223-3	chr17	84081725	84082725	+	619.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045458, intron 2 of 5)	intron (NR_045458, intron 2 of 5)	3565.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70975715-2	chr12	70975215	70976215	+	619.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_011184, intron 1 of 10)	(CA)n|Simple_repeat|Simple_repeat	1092.0	NM_011184	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34223205-3	chr13	34222687	34223687	+	619.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	60223.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34942277-3	chr6	34941809	34942809	+	619.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21361.0	NM_009292	20899.0	Mm.5171	NM_009292	ENSMUSG00000029848	Stra8	-	stimulated by retinoic acid gene 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152595465-2	chr1	152594965	152595965	+	619.291626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	29752.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6096527-3	chr2	6096009	6097009	+	619.277771	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	33676.0	NM_144883	227545.0	Mm.133542	NM_144883	ENSMUSG00000045319	Proser2	5430407P10Rik|AU067770	proline and serine rich 2	protein-coding	1.5	0.0	0.0	0.0	0.0	0.5
Merged-chr13-60749132-2	chr13	60748632	60749632	+	619.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 20 of 26)	intron (NM_134062, intron 20 of 26)	37232.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0.0	0.0	1.0	0.0	6.0	1.0
Merged-chr9-48586521-2	chr9	48586033	48587033	+	619.25	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18590.0	NM_010924	18113.0	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	5.5	11.0	5.5	5.5	7.5	4.0
Merged-chr13-51397310-2	chr13	51396810	51397810	+	619.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11308.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-110462968-3	chr8	110462480	110463480	+	619.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172916, intron 24 of 86)	intron (NM_172916, intron 24 of 86)	39376.0	NR_105058	100861869.0	Mm.84499	NR_105058		Gm21283	-	predicted gene, 21283	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102462077-3	chr15	102461570	102462570	+	619.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025385, intron 4 of 4)	intron (NM_025385, intron 4 of 4)	2900.0	NM_025385	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55657032-2	chr19	55656532	55657532	+	619.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	RLTR17B_Mm|LTR|ERVK	45172.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30722594-2	chr14	30722081	30723081	+	619.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166532, intron 1 of 20)	B2_Mm2|SINE|B2	6966.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	3.5	3.0	11.0	1.0	4.0	6.0
Merged-chr6-119489949-2	chr6	119489449	119490449	+	619.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009525, intron 1 of 4)	intron (NM_009525, intron 1 of 4)	10281.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83675807-4	chr7	83675325	83676325	+	619.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 6 of 18)	intron (NM_001360088, intron 6 of 18)	-20330.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-154787767-3	chr1	154787233	154788233	+	619.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61813.0	NM_009782	12290.0	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35859968-1	chr8	35859468	35860468	+	619.0	f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	22989.0	NR_046181	330737.0	Mm.381743	NR_046181	ENSMUSG00000109761	5430403N17Rik	5430403N17	RIKEN cDNA 5430403N17 gene	ncRNA	1.0	0.0	1.0	5.5	2.0	0.0
Merged-chr7-19329648-2	chr7	19329148	19330148	+	619.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15423.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70553700-1	chr14	70553200	70554200	+	619.0	f1_balb.idr	promoter-TSS (NM_021877)	promoter-TSS (NM_021877)	-356.0	NM_021877	15460.0	Mm.7598	NM_021877	ENSMUSG00000022096	Hr	ALUNC|AU|N|ba|bldy|hr|rh|rh-bmh|rhino	hairless	protein-coding	0.5	0.0	1.0	0.5	0.0	1.0
Merged-chr14-30595134-1	chr14	30594634	30595634	+	619.0	f1_balb.idr	TTS (NM_001310682)	TTS (NM_001310682)	15176.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	16.5	36.0	18.0	7.5	22.0	13.5
Merged-chr10-37320687-2	chr10	37320187	37321187	+	619.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-181761.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-8134098-2	chr9	8133598	8134598	+	619.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001045524, exon 1 of 11)	exon (NM_001045524, exon 1 of 11)	196.0	NM_001045524	234915.0	Mm.101341	NM_001045524	ENSMUSG00000040729	Cep126	mKIAA1377	centrosomal protein 126	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-146521466-2	chr4	146520966	146521966	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045468, intron 2 of 2)	Lx3B|LINE|L1	6546.0	NM_001243139	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34946795-2	chr6	34946295	34947295	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025573, intron 7 of 7)	intron (NM_001025573, intron 7 of 7)	25847.0	NM_009292	20899.0	Mm.5171	NM_009292	ENSMUSG00000029848	Stra8	-	stimulated by retinoic acid gene 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75619884-2	chr11	75619384	75620384	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008850, intron 9 of 11)	intron (NM_008850, intron 9 of 11)	-11136.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-94739515-1	chr4	94739015	94740015	+	619.0	f0_balb.idr	5' UTR (NM_001290549, exon 1 of 23)	5' UTR (NM_001290549, exon 1 of 23)	226.0	NM_001290551	21687.0	Mm.14313	NM_013690	ENSMUSG00000006386	Tek	AA517024|Cd202b|Hyk|STK1|Tie-2|Tie2	TEK receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107933692-2	chr4	107933192	107934192	+	619.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-10103.0	NM_009949	12896.0	Mm.307620	NM_009949	ENSMUSG00000028607	Cpt2	AI323697|CPTII	carnitine palmitoyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116124046-1	chr3	116123546	116124546	+	619.0	f0_balb.idr	intron (NM_011693, intron 4 of 8)	intron (NM_011693, intron 4 of 8)	5642.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	4.0	16.0	2.5	15.0	1.0	8.0
Merged-chr8-34054509-1	chr8	34054009	34055009	+	619.0	f1_c57bl6.idr	Intergenic	Intergenic	53305.0	NM_001293758	22428.0	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	10.5	3.5	2.5	0.0	0.0	2.0
Merged-chr19-55645202-2	chr19	55644702	55645702	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	B4|SINE|B4	57002.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16071985-2	chr7	16071485	16072485	+	619.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347559, exon 1 of 14)	exon (NM_001347559, exon 1 of 14)	140.0	NM_001099277	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0.0	3.5	0.0	8.0	0.0	5.0
Merged-chr4-156032533-1	chr4	156032033	156033033	+	619.0	f1_c57bl6.idr	Intergenic	Intergenic	6211.0	NM_021985	21936.0	Mm.3180	NM_009400	ENSMUSG00000041954	Tnfrsf18	AITR|Gitr	tumor necrosis factor receptor superfamily, member 18	protein-coding	3.0	13.0	6.5	3.0	14.5	6.5
Merged-chr7-67236489-2	chr7	67235989	67236989	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 11 of 11)	intron (NM_001357324, intron 11 of 11)	13873.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-126677819-2	chr2	126677319	126678319	+	619.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1482.0	NM_001271470	14391.0	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31609627-2	chr5	31609127	31610127	+	619.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A1|DNA|hAT-Charlie	-4324.0	NM_025796	66845.0	Mm.120763	NM_025796	ENSMUSG00000106918	Mrpl33	0610009M10Rik|L33mt|MRP-L33	mitochondrial ribosomal protein L33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105597956-2	chr5	105597456	105598456	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	78485.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88700059-2	chr4	88699559	88700559	+	619.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8791.0	NM_008336	15974.0	Mm.377093	NM_008336	ENSMUSG00000100079	Ifnab	-	interferon alpha B	protein-coding	0.0	4.0	5.0	0.0	0.0	2.5
Merged-chr4-133178500-1	chr4	133178000	133179000	+	619.0	f0_balb.idr	intron (NM_153423, intron 2 of 8)	intron (NM_153423, intron 2 of 8)	-17155.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	103.0	150.0	112.5	61.0	91.0	75.0
Merged-chr7-19473163-3	chr7	19472668	19473668	+	619.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-14674.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	0.5	8.5	9.0	6.0	6.5	5.5
Merged-chr2-105417865-1	chr2	105417365	105418365	+	619.0	f0_balb.idr	Intergenic	Intergenic	-18546.0	NM_009037	19672.0	Mm.4876	NM_009037	ENSMUSG00000005973	Rcn1	Rcn	reticulocalbin 1	protein-coding	0.0	0.0	0.5	0.0	3.0	0.0
Merged-chr12-3782309-2	chr12	3781809	3782809	+	619.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_149729, exon 19 of 19)	non-coding (NR_149729, exon 19 of 19)	-24671.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120399622-2	chr14	120399122	120400122	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360380, intron 7 of 7)	intron (NM_001360380, intron 7 of 7)	-78839.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28445428-2	chr7	28444928	28445928	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039192, intron 5 of 6)	intron (NM_001039192, intron 5 of 6)	4491.0	NM_001039192	63986.0	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	0.0	5.5	0.5	0.0	0.0	0.0
Merged-chr14-25785369-1	chr14	25784869	25785869	+	619.0	f0_balb.idr	Intergenic	Intergenic	-16513.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21604667-1	chr10	21604167	21605167	+	619.0	f1_c57bl6.idr	intron (NR_027968, intron 2 of 2)	intron (NR_027968, intron 2 of 2)	11522.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	22.5	74.5	68.5	24.0	46.5	25.0
Merged-chr17-25011902-2	chr17	25011402	25012402	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020608, intron 2 of 20)	intron (NM_020608, intron 2 of 20)	3328.0	NM_020608	57354.0	Mm.328854	NM_020608	ENSMUSG00000038002	Cramp1l	5830477H08Rik|AI256853|AI790734|Cramp1|Tce4|mKIAA1426	cramped chromatin regulator homolog 1	protein-coding	3.5	5.5	4.0	6.5	0.0	7.5
Merged-chr1-152601570-1	chr1	152601070	152602070	+	619.0	f0_balb.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	23647.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45208814-2	chr9	45208302	45209302	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 1 of 4)	MTC|LTR|ERVL-MaLR	-4727.0	NM_145403	214523.0	Mm.436756	NM_145403	ENSMUSG00000032091	Tmprss4	mCAP2	transmembrane protease, serine 4	protein-coding	9.5	5.0	4.5	9.5	15.0	12.5
Merged-chr15-80250900-1	chr15	80250400	80251400	+	619.0	f1_c57bl6.idr	3' UTR (NM_178719, exon 6 of 6)	3' UTR (NM_178719, exon 6 of 6)	-4284.0	NM_001287180	11911.0	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	0.5	7.5	0.0	0.0	0.0	3.0
Merged-chr9-76207776-2	chr9	76207276	76208276	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153419, intron 2 of 7)	intron (NR_153419, intron 2 of 7)	5881.0	NM_205844	404194.0	Mm.213862	NM_205844	ENSMUSG00000059383	Gfral	AY457637|Gral	GDNF family receptor alpha like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10354969-2	chr17	10354469	10355469	+	619.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER44B|DNA|TcMar-Tigger	30367.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80595746-2	chr10	80595246	80596246	+	619.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCTG)n|Simple_repeat|Simple_repeat	-5405.0	NM_145421	216169.0	Mm.29802	NM_145421	ENSMUSG00000003346	Abhd17a	1700013O15Rik|BC005632|D10Bwg1364e|Fam108a	abhydrolase domain containing 17A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-86941934-2	chr5	86941434	86942434	+	619.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-15431.0	NM_152811	71773.0	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11676850-1	chr16	11676350	11677350	+	619.0	f0_c57.idr	intron (NM_028964, intron 18 of 20)	intron (NM_028964, intron 18 of 20)	-102852.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-116301593-2	chr13	116301093	116302093	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021459, intron 5 of 5)	intron (NM_021459, intron 5 of 5)	8095.0	NM_021459	16392.0	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	5.0	0.5	4.5	1.0	0.0	1.5
Merged-chr17-69159340-2	chr17	69158840	69159840	+	619.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355734)	promoter-TSS (NM_001355734)	-16.0	NM_001355736	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78378563-1	chr9	78378063	78379063	+	619.0	f1_c57bl6.idr	promoter-TSS (NM_026480)	promoter-TSS (NM_026480)	25.0	NM_026480	67968.0	Mm.26883	NM_026480	ENSMUSG00000032346	Ooep	2410146L05Rik|Floped|Moep19|Sddr	oocyte expressed protein	protein-coding	1.5	0.0	0.0	0.0	0.0	2.0
Merged-chr1-172026734-1	chr1	172026234	172027234	+	619.0	f1_c57bl6.idr	intron (NM_033509, intron 1 of 7)	intron (NM_033509, intron 1 of 7)	561.0	NM_033509	93840.0	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	VANGL planar cell polarity 2	protein-coding	5.0	3.5	2.0	1.5	1.5	6.0
Merged-chr18-35753099-2	chr18	35752599	35753599	+	619.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-12545.0	NM_001289592	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-42034880-1	chr11	42034380	42035380	+	619.0	f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-34166.0	NM_008073	14406.0	Mm.5309	NM_008073	ENSMUSG00000020436	Gabrg2	GABAA-R|Gabrg-2|gamma2	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	protein-coding	3.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32411443-1	chr4	32410943	32411943	+	619.0	f0_balb.idr	Intergenic	Intergenic	-5992.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109917433-2	chr8	109916933	109917933	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122594, intron 9 of 18)	intron (NM_001122594, intron 9 of 18)	44772.0	NM_212447	73608.0	Mm.86833	NM_028584	ENSMUSG00000001672	Marveld3	1810006A16Rik|AI642133|Marvd3|Mrvldc3	MARVEL (membrane-associating) domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30582713-1	chr14	30582213	30583213	+	619.0	f1_c57bl6.idr	Intergenic	Intergenic	10564.0	NR_037237	100526475.0		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	1.0	3.5	7.5	0.0	2.0	0.5
Merged-chr1-156003324-1	chr1	156002824	156003824	+	619.0	f1_balb.idr	Intergenic	RMER1B|Other|Other	-30069.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	0.5	14.0	16.5	0.0	10.0	11.5
Merged-chr8-83609852-2	chr8	83609352	83610352	+	619.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_018808, exon 2 of 3)	exon (NM_018808, exon 2 of 3)	1304.0	NM_001308227	81489.0	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	6.5	24.0	4.0	9.5	33.0	6.0
Merged-chr17-26230845-2	chr17	26230345	26231345	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	13397.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	34.0	85.0	45.0	45.0	70.0	86.5
Merged-chr7-96883150-1	chr7	96882650	96883650	+	619.0	f0_balb.idr	intron (NM_011858, intron 27 of 32)	intron (NM_011858, intron 27 of 32)	-68377.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16160879-3	chr7	16160373	16161373	+	619.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_148946)	TTS (NM_148946)	-14522.0	NM_001277988	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr2-144173976-1	chr2	144173476	144174476	+	619.0	f0_balb.idr	non-coding (NR_136884, exon 4 of 4)	non-coding (NR_136884, exon 4 of 4)	15314.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25618198-2	chr2	25617698	25618698	+	619.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029859)	promoter-TSS (NM_029859)	-520.0	NM_029859	77058.0	Mm.478493	NM_029859	ENSMUSG00000026940	Ccdc183	4921530D09Rik|Cccd183|Kiaa1984	coiled-coil domain containing 183	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-78851084-2	chr13	78850584	78851584	+	619.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-652211.0	NM_010151	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60808459-2	chr2	60807959	60808959	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	72979.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181363982-2	chr2	181363482	181364482	+	619.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144894)	promoter-TSS (NM_144894)	-949.0	NM_144894	229007.0	Mm.87720	NM_144894	ENSMUSG00000027582	Zgpat	1500006I01Rik|BC021513	zinc finger, CCCH-type with G patch domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-87098247-3	chr9	87097748	87098748	+	619.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46058.0	NM_001177731	244958.0	Mm.335337	NM_001101482	ENSMUSG00000042761	Mrap2	BB633055	melanocortin 2 receptor accessory protein 2	protein-coding	0.0	5.0	0.5	0.0	0.0	0.0
Merged-chr3-40848147-1	chr3	40847647	40848647	+	619.0	f0_balb.idr	intron (NR_038067, intron 1 of 5)	intron (NR_038067, intron 1 of 5)	1148.0	NR_038067	100039027.0	Mm.482948	NR_038067		Gm2011	-	predicted gene 2011	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66113902-3	chr7	66113413	66114413	+	619.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081163, intron 1 of 2)	intron (NM_001081163, intron 1 of 2)	4398.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-48926445-2	chr11	48925945	48926945	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045540, intron 1 of 2)	L1_Rod|LINE|L1	737.0	NM_001045540	620913.0	Mm.452174	NM_001045540	ENSMUSG00000048852	Gm12185	Irgb2b1	predicted gene 12185	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-28959255-2	chr13	28958755	28959755	+	619.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5556.0	NM_009238	20677.0	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114129508-2	chr5	114129008	114130008	+	619.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040691)	promoter-TSS (NM_001040691)	-927.0	NM_001040691	22256.0	Mm.1393	NM_011677	ENSMUSG00000029591	Ung	UNG1|UNG2	uracil DNA glycosylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115047927-1	chr11	115047427	115048427	+	619.0	f0_balb.idr	intron (NM_199201, intron 1 of 3).2	ID_B1|SINE|B4	368.0	NM_199201	382551.0	Mm.424732	NM_199201	ENSMUSG00000069607	Cd300ld3	AY457049|Cd300lh|Clm3|Lmir7|clm-3	CD300 molecule like family member D3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70814459-1	chr8	70813959	70814959	+	619.0	f1_c57bl6.idr	exon (NM_008353, exon 9 of 16)	exon (NM_008353, exon 9 of 16)	6010.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	0.0	4.0	0.5	0.0	1.0	0.0
Merged-chr13-58020613-2	chr13	58020113	58021113	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195075, intron 10 of 16)	intron (NM_001195075, intron 10 of 16)	2587.0	NR_030544	100124491.0		NR_030544	ENSMUSG00000077962	Mir874	Mirn874|mir-874|mmu-mir-874	microRNA 874	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5073798-3	chr19	5073308	5074308	+	619.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5730.0	NM_054042	70445.0	Mm.29597	NM_054042	ENSMUSG00000056481	Cd248	2610111G01Rik|AI842296|Cd164l1|Tem1	CD248 antigen, endosialin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-141058159-1	chr5	141057659	141058659	+	619.0	f0_balb.idr	Intergenic	Intergenic	-57563.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25949437-1	chr10	25948937	25949937	+	619.0	f1_c57bl6.idr	Intergenic	Intergenic	-112000.0	NR_045349	73803.0	Mm.258921	NR_045349	ENSMUSG00000112444	4930401C15Rik	-	RIKEN cDNA 4930401C15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr16-97543395-1	chr16	97542895	97543895	+	619.0	f0_balb.idr	intron (NM_013606, intron 2 of 13)	intron (NM_013606, intron 2 of 13)	7312.0	NM_013606	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-108621392-1	chr4	108620892	108621892	+	619.0	f1_c57bl6.idr	intron (NM_177045, intron 1 of 24)	intron (NM_177045, intron 1 of 24)	1436.0	NM_177045	319965.0	Mm.151129	NM_177045	ENSMUSG00000028582	Cc2d1b	A830039B04Rik|Freud2	coiled-coil and C2 domain containing 1B	protein-coding	0.0	0.0	0.5	0.0	3.5	0.0
Merged-chr5-139410555-2	chr5	139410055	139411055	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177000, intron 1 of 1)	intron (NM_177000, intron 1 of 1)	4168.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-27413486-3	chr16	27412995	27413995	+	619.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025615, intron 4 of 9)	intron (NM_001025615, intron 4 of 9)	24539.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119050422-1	chr2	119049922	119050922	+	619.0	f0_balb.idr	intron (NM_029617, intron 1 of 23)	intron (NM_029617, intron 1 of 23)	3303.0	NM_029617	76464.0	Mm.202518	NM_029617	ENSMUSG00000027326	Knl1	2310043D08Rik|5730505K17Rik|Casc5	kinetochore scaffold 1	protein-coding	0.0	10.0	4.5	8.0	1.0	3.5
Merged-chr14-40923566-1	chr14	40923066	40924066	+	619.0	f0_balb.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	24643.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31632720-1	chr15	31632220	31633220	+	619.0	f0_balb.idr	Intergenic	LTR50|LTR|ERVL	30604.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96257346-2	chr3	96256846	96257846	+	619.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5971.0	NM_033596	97122.0	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25333880-1	chr10	25333380	25334380	+	619.0	f1_balb.idr	Intergenic	Intergenic	-25918.0	NM_001358754	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0.0	0.0	0.0	3.0	0.0	2.5
Merged-chr6-58595319-2	chr6	58594819	58595819	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355477, intron 1 of 15)	intron (NM_001355477, intron 1 of 15)	-1353.0	NM_011920	26357.0	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170962502-3	chr1	170961986	170962986	+	619.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010187, intron 5 of 6)	intron (NM_010187, intron 5 of 6)	13585.0	NM_010187	14130.0	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62296430-2	chr4	62295930	62296930	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290518, intron 3 of 3)	intron (NM_001290518, intron 3 of 3)	4883.0	NM_001290518	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116469310-2	chr11	116468810	116469810	+	619.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14963.0	NM_001033267	217341.0	Mm.387352	NM_001033267	ENSMUSG00000070331	Qrich2	Gm66	glutamine rich 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47194284-2	chr14	47193783	47194783	+	619.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-4870.0	NM_008102	14528.0	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTP-CH-I|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	8.0	2.5	0.0	0.0	3.5	0.5
Merged-chr10-60401495-2	chr10	60400995	60401995	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164374, intron 1 of 1)	intron (NM_001164374, intron 1 of 1)	1769.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-8665515-2	chr16	8665015	8666015	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025821, intron 1 of 3)	intron (NM_025821, intron 1 of 3)	6638.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-37653190-2	chr16	37652690	37653690	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026610, intron 1 of 2)	intron (NM_026610, intron 1 of 2)	1178.0	NM_026610	68194.0	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68897299-2	chr11	68896810	68897810	+	619.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4256.0	NM_009080	19941.0	Mm.3229	NM_009080	ENSMUSG00000060938	Rpl26	SIG-20	ribosomal protein L26	protein-coding	5.5	1.0	5.0	2.0	0.0	4.5
Merged-chr11-106091372-2	chr11	106090872	106091872	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 1 of 15)	intron (NM_011947, intron 1 of 15)	6470.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3834206-2	chr4	3833682	3834682	+	618.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026147, exon 4 of 4)	3' UTR (NM_026147, exon 4 of 4)	1473.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	5.0	6.5	12.0	6.0	2.0	10.0
Merged-chr15-82805399-2	chr15	82804899	82805899	+	618.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11154.0	NM_029562	76279.0	Mm.439931	NM_029562	ENSMUSG00000022445	Cyp2d26	1300006E06Rik	cytochrome P450, family 2, subfamily d, polypeptide 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29119576-2	chr2	29119076	29120076	+	618.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2C_Mm|LTR|ERVL	-5416.0	NM_198033	269254.0	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88175352-2	chr3	88174852	88175852	+	618.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_045997, intron 2 of 2)	RCHARR1|DNA|hAT-Charlie	2433.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102418353-2	chr12	102417853	102418853	+	618.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 2 of 13)	RLTR25B|LTR|ERVK	21460.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	39.5	101.5	90.5	53.5	105.5	103.5
Merged-chr16-96083933-2	chr16	96083433	96084433	+	618.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1505.0	NM_145125	93871.0	Mm.240871	NM_145125	ENSMUSG00000022914	Brwd1	5330419I02Rik|D530019K20Rik|G1-403-16|Wdr9|repro5	bromodomain and WD repeat domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45586123-2	chr17	45585623	45586623	+	618.833313	f1_balb.idr|f1_c57bl6.idr	exon (NM_001199116, exon 12 of 13)	exon (NM_001199116, exon 12 of 13)	6270.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80721685-2	chr7	80721185	80722185	+	618.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 35 of 37)	L1MC4a|LINE|L1	-32808.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr6-113328496-2	chr6	113327996	113328996	+	618.75	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_149720, exon 2 of 7)	non-coding (NR_149720, exon 2 of 7)	1520.0	NM_010957	18294.0	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43520788-2	chr1	43520293	43521293	+	618.75	f0_balb.idr|f0_c57.idr	intron (NM_010879, intron 2 of 4)	intron (NM_010879, intron 2 of 4)	75042.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35132983-2	chr17	35132483	35133483	+	618.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1231.0	NM_018816	55938.0	Mm.2161	NM_018816	ENSMUSG00000024391	Apom	1190010O19Rik|G3a|NG20	apolipoprotein M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-90735896-2	chr6	90735396	90736396	+	618.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356440, intron 1 of 13)	intron (NM_001356440, intron 1 of 13)	-19367.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124837323-2	chr6	124836823	124837823	+	618.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_013530, intron 6 of 9)	intron (NM_013530, intron 6 of 9)	2952.0	NM_013530	14695.0	Mm.68889	NM_013530	ENSMUSG00000023439	Gnb3	Gnb-3	guanine nucleotide binding protein (G protein), beta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78155546-2	chr10	78155046	78156046	+	618.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC|LINE|L1	14222.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40859012-2	chr9	40858444	40859444	+	618.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-15183.0	NM_178245	244813.0	Mm.261652	NM_178245	ENSMUSG00000054360	Bsx	Bsx1a|Bsx1b	brain specific homeobox	protein-coding	5.0	3.0	7.5	0.0	6.0	0.0
Merged-chr15-84617112-3	chr15	84616610	84617610	+	618.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR41A2|LTR|ERV1	-46096.0	NM_001346662	109270.0	Mm.291372	NM_146061	ENSMUSG00000036106	Prr5	AU043908|Arhgap8|C030017C09Rik|C78947|Protor-1|Protor1	proline rich 5 (renal)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60691803-1	chr13	60691303	60692303	+	618.666687	f0_balb.idr	intron (NM_134062, intron 2 of 26)	ORR1D2|LTR|ERVL-MaLR	89592.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79680273-2	chr10	79679773	79680773	+	618.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-1922.0	NM_001359818	216150.0	Mm.21981	NM_177613	ENSMUSG00000020307	Cdc34	AI327276|E2-CDC34|UBE2R1	cell division cycle 34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45260351-2	chr9	45259851	45260851	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_136903, intron 5 of 5)	intron (NR_136903, intron 5 of 5)	6356.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117160639-2	chr5	117160151	117161151	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	27063.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	34.5	58.0	60.0	25.0	80.0	47.5
Merged-chr11-30231446-2	chr11	30230956	30231956	+	618.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11684.0	NM_175836	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	19.0	7.5	0.0	3.0	0.0	2.0
Merged-chr6-24257371-2	chr6	24256871	24257871	+	618.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-89279.0	NM_019481	55961.0	Mm.19299	NM_019481	ENSMUSG00000029700	Slc13a1	AI314066|AI987826|NaSi-1|Nas1	solute carrier family 13 (sodium/sulfate symporters), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-143125699-2	chr2	143125199	143126199	+	618.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47306.0	NM_020595	57329.0	Mm.157751	NM_020595	ENSMUSG00000027416	Otor	CDRAP|Fdp|MIA|MIAL	otoraplin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-20000132-2	chr5	19999632	20000632	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015823, intron 1 of 21)	intron (NM_015823, intron 1 of 21)	92614.0	NM_015823	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5592591-2	chr17	5592091	5593091	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	99991.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100664478-2	chr15	100663978	100664978	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270537, intron 1 of 10)	intron (NM_001270537, intron 1 of 10)	5022.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	14.0	7.5	12.0	34.0	12.5	18.5
Merged-chr18-78789774-2	chr18	78789274	78790274	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053099, intron 4 of 5)	intron (NM_053099, intron 4 of 5)	-192824.0	NM_207651	27411.0	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84152057-2	chr17	84151557	84152557	+	618.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35890.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-87066182-2	chr18	87065682	87066682	+	618.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	353871.0	NM_001361145	12405.0	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27411129-2	chr14	27410629	27411629	+	618.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-17705.0	NM_028945	218850.0	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72674342-2	chr8	72673842	72674842	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176940, intron 7 of 18)	intron (NM_176940, intron 7 of 18)	27631.0	NM_176940	319555.0	Mm.390076	NM_176940	ENSMUSG00000048148	Nwd1	A230063L24Rik	NACHT and WD repeat domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115537568-2	chr5	115537061	115538061	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	B1_Mus2|SINE|Alu	-21906.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-60245159-2	chr9	60244659	60245659	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040426, intron 7 of 17)	intron (NM_001040426, intron 7 of 17)	-103939.0	NM_172444	207596.0	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76228183-2	chr16	76227683	76228683	+	618.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105570.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-150392132-2	chr1	150391632	150392632	+	618.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133780)	promoter-TSS (NM_133780)	-706.0	NM_133780	108989.0	Mm.174256	NM_133780	ENSMUSG00000006005	Tpr	2610029M07Rik|C77892	translocated promoter region, nuclear basket protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-35146849-2	chr6	35146349	35147349	+	618.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13112.0	NM_001164414	53621.0	Mm.214525	NM_016877	ENSMUSG00000038784	Cnot4	Not4|Not4h|Not4hp	CCR4-NOT transcription complex, subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91638249-2	chr16	91637749	91638749	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357351, intron 6 of 21)	intron (NM_001357351, intron 6 of 21)	8723.0	NM_010256	14450.0	Mm.4505	NM_010256	ENSMUSG00000022962	Gart	Gaps|Prgs	phosphoribosylglycinamide formyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113016989-2	chr12	113016489	113017489	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081170, intron 1 of 23)	intron (NM_001081170, intron 1 of 23)	2481.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-28592377-2	chr10	28591877	28592877	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359356, intron 29 of 30)	B3|SINE|B2	-75983.0	NM_001305663	210757.0	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24896099-2	chr17	24895599	24896599	+	618.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019730)	promoter-TSS (NM_019730)	-401.0	NM_019730	79059.0	Mm.430765	NM_019730	ENSMUSG00000073435	Nme3	1810009F08Rik|AI413736|DR-nm23|Ndk3|Nm23-DR|Nm23-M3	NME/NM23 nucleoside diphosphate kinase 3	protein-coding	16.5	43.0	19.0	29.5	58.5	20.5
Merged-chr3-135245931-2	chr3	135245431	135246431	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173762, intron 29 of 45)	intron (NM_173762, intron 29 of 45)	33368.0	NM_173762	229841.0	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34038967-2	chr11	34038467	34039467	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-7961.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-178063132-2	chr2	178062632	178063632	+	618.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	15293.0	NM_001162922	353208.0	Mm.381194	NM_001162922	ENSMUSG00000078861	Zfp931	2810021G02Rik	zinc finger protein 931	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97328761-2	chr7	97328261	97329261	+	618.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2797.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0.0	0.0	0.0	2.5	0.5	1.0
Merged-chr17-46133101-2	chr17	46132601	46133601	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029338, intron 4 of 4)	intron (NM_029338, intron 4 of 4)	11097.0	NM_029338	75564.0	Mm.17993	NM_029338	ENSMUSG00000023966	Rsph9	1700027N10Rik	radial spoke head 9 homolog (Chlamydomonas)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120837291-2	chr7	120836791	120837791	+	618.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5540.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30659395-2	chr13	30658895	30659895	+	618.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037955)	promoter-TSS (NM_001037955)	-664.0	NM_001037955	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40550947-2	chr12	40550447	40551447	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	104894.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47772113-2	chr17	47771613	47772613	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-13631.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.0	0.0	0.5	0.0	1.5	4.0
Merged-chr3-27208200-2	chr3	27207700	27208700	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	25196.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95010154-2	chr8	95009654	95010654	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018882, intron 11 of 13)	intron (NM_018882, intron 11 of 13)	-7538.0	NM_173036	54672.0	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65527956-2	chr9	65527456	65528456	+	618.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	52131.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-153849867-2	chr3	153849367	153850367	+	618.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_040373)	TTS (NR_040373)	2557.0	NR_040373	72317.0	Mm.440147	NR_040373	ENSMUSG00000086438	Asb17os	2510003D18Rik	ankyrin repeat and SOCS box-containing 17, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120841587-2	chr14	120841087	120842087	+	618.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69607.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	0.0	1.5	0.0	0.0	1.5	0.0
Merged-chr18-52179665-2	chr18	52179165	52180165	+	618.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-56119.0	NR_029788	723830.0		NR_029788	ENSMUSG00000065494	Mir28a	Mir28|Mirn28|mmu-mir-28|mmu-mir-28a	microRNA 28a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4633058-2	chr16	4632558	4633558	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030205, intron 16 of 27)	(TAAA)n|Simple_repeat|Simple_repeat	-6887.0	NM_139307	246154.0	Mm.482140	NM_139307	ENSMUSG00000039646	Vasn	2610528G05Rik|Atia|Slitl2	vasorin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69691537-2	chr11	69691037	69692037	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011614, intron 5 of 6)	intron (NM_011614, intron 5 of 6)	4561.0	NM_011614	21944.0	Mm.8983	NM_011614	ENSMUSG00000097328	Tnfsf12	Apo3l|Dr3l|Dr3lg|Tweak	tumor necrosis factor (ligand) superfamily, member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88217862-2	chr7	88217362	88218362	+	618.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-60223.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24476525-2	chr5	24476025	24477025	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359881, intron 2 of 15)	intron (NM_001359881, intron 2 of 15)	24348.0	NM_139153	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89341510-2	chr15	89341010	89342010	+	618.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	7037.0	NM_019977	56727.0	Mm.158200	NM_019977	ENSMUSG00000022613	Miox	0610009I10Rik|AI314022|Aldrl6|C85427|RSOR	myo-inositol oxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-28467151-2	chr2	28466651	28467651	+	618.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166031)	promoter-TSS (NM_001166031)	-827.0	NM_027040	69327.0	Mm.46470	NM_027040	ENSMUSG00000026831	1700007K13Rik	Rbest47	RIKEN cDNA 1700007K13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84921836-2	chr18	84921336	84922336	+	618.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13169.0	NM_015798	50764.0	Mm.28369	NM_015798	ENSMUSG00000034391	Fbxo15	AU019763|Fbx15|ecat3	F-box protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-41046043-2	chr8	41045546	41046546	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 5 of 13)	intron (NM_001005863, intron 5 of 13)	-4115.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	2.5	3.0	6.5	2.0	7.0	1.0
Merged-chr10-7900938-2	chr10	7900438	7901438	+	618.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52127.0	NM_001359534	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0.0	1.0	0.0	0.0	0.0	0.5
Merged-chr15-74999890-2	chr15	74999387	75000387	+	618.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1856.0	NM_010738	110454.0	Mm.425949	NM_010738	ENSMUSG00000075602	Ly6a	Ly-6A.2|Ly-6A/E|Ly-6E.1|Sca-1|Sca1|TAP	lymphocyte antigen 6 complex, locus A	protein-coding	6.5	10.0	6.0	1.0	7.0	3.0
Merged-chr17-67355932-2	chr17	67355432	67356432	+	618.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1441.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4594649-2	chr8	4594149	4595149	+	618.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR6_Mm|LTR|ERV1	-18521.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92835336-2	chr1	92834836	92835836	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016696, intron 1 of 8)	intron (NM_016696, intron 1 of 8)	3691.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20898850-1	chr13	20898350	20899350	+	618.5	f0_balb.idr	intron (NM_012054, intron 4 of 20)	intron (NM_012054, intron 4 of 20)	104737.0	NM_012054	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	7.0	1.5	4.5	7.0	0.5	4.5
Merged-chr8-70747076-2	chr8	70746576	70747576	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_201607, intron 9 of 16)	intron (NM_201607, intron 9 of 16)	-7603.0	NM_001328047	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	1.0	0.0	1.0	3.5	2.0	4.0
Merged-chr10-118872305-2	chr10	118871805	118872805	+	618.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	-3402.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91838239-2	chr16	91837739	91838739	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 17 of 28)	RSINE1|SINE|B4	93391.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70552800-2	chr11	70552300	70553300	+	618.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008876, exon 14 of 25)	exon (NM_008876, exon 14 of 25)	-10081.0	NM_001045964	50932.0	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118010588-2	chr2	118010088	118011088	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	100614.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	0.0	1.0	0.0	0.0	0.0	5.0
Merged-chr17-5595612-2	chr17	5595112	5596112	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	B4A|SINE|B4	103012.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134743156-2	chr6	134742656	134743656	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_130447, intron 3 of 6)	(TG)n|Simple_repeat|Simple_repeat	-49204.0	NR_151454	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	32.0	71.0	41.5	33.0	48.5	43.5
Merged-chr18-39231979-2	chr18	39231479	39232479	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 14 of 21)	intron (NM_001361073, intron 14 of 21)	238834.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79642224-2	chr11	79641724	79642724	+	618.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175543, intron 3 of 14)	PB1D10|SINE|Alu	-19061.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134100197-2	chr1	134099697	134100697	+	618.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11045.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33496153-2	chr16	33495653	33496653	+	618.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_011749, exon 9 of 9)	exon (NM_011749, exon 9 of 9)	-22176.0	NM_134251	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60005412-2	chr10	60004912	60005912	+	618.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_026937, intron 2 of 10)	B3A|SINE|B2	2085.0	NM_001199187	69090.0	Mm.155839	NM_026937	ENSMUSG00000044475	Ascc1	1810015P09Rik|AI550520|ASC1p50|CGI-18	activating signal cointegrator 1 complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135988041-2	chr4	135987541	135988541	+	618.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025411)	promoter-TSS (NM_025411)	-797.0	NM_025411	66193.0	Mm.29131	NM_025411	ENSMUSG00000028669	Pithd1	1110049F12Rik|AA408179|Trp26	PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-10105204-3	chr1	10104654	10105654	+	618.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026493, intron 17 of 29)	intron (NM_026493, intron 17 of 29)	66936.0	NM_026493	211660.0	Mm.244046	NM_026493	ENSMUSG00000056763	Cspp1	2310020J12Rik|4930413O22Rik|AA387550|BC055915|Cspp2|Cspp3	centrosome and spindle pole associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-113444458-1	chr11	113443958	113444958	+	618.333313	f0_balb.idr	intron (NM_027216, intron 5 of 9)	intron (NM_027216, intron 5 of 9)	121357.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	2.5	0.0	4.5	5.0	1.0	5.0
Merged-chr2-166083147-1	chr2	166082647	166083647	+	618.333313	f1_balb.idr	intron (NM_001252579, intron 10 of 20)	intron (NM_001252579, intron 10 of 20)	72138.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	7.0	1.5	0.0	3.5	5.5	0.5
Merged-chr11-105944265-3	chr11	105943762	105944762	+	618.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007805, exon 1 of 6)	5' UTR (NM_007805, exon 1 of 6)	225.0	NM_007805	13056.0	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-89332377-3	chr7	89331886	89332886	+	618.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 2 of 14)	intron (NM_001360746, intron 2 of 14)	6401.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-133973421-3	chr6	133972921	133973921	+	618.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62279.0	NM_001303102	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.0	5.0	3.5	1.0	6.0	4.0
Merged-chr15-50997280-4	chr15	50996779	50997779	+	618.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107238.0	NM_032000	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0.0	6.5	1.5	0.0	0.0	0.0
Merged-chr11-82010789-2	chr11	82010281	82011281	+	618.25	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-24796.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-73034348-2	chr8	73033848	73034848	+	618.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317391, intron 7 of 15)	intron (NM_001317391, intron 7 of 15)	17836.0	NR_039551	100628574.0		NR_039551	ENSMUSG00000093140	Mir28b	mmu-mir-28b	microRNA 28b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53037158-2	chr4	53036658	53037658	+	618.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 46 of 49)	B2_Mm2|SINE|B2	25278.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145001734-2	chr7	145001243	145002243	+	618.25	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-61818.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	0.0	0.0	2.5	7.0	0.5	1.5
Merged-chr13-73769202-2	chr13	73768702	73769702	+	618.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 1 of 24)	intron (NM_001360694, intron 1 of 24)	5505.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4745577-2	chr16	4745077	4746077	+	618.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_010443, intron 1 of 5)	IAPEz-int|LTR|ERVK	3964.0	NM_010443	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-115963025-2	chr4	115962525	115963525	+	618.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-23099.0	NM_130865	140477.0	Mm.213206	NM_130865	ENSMUSG00000028707	Dmbx1	Atx|Cdmx|Mbx|Otx3	diencephalon/mesencephalon homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111678269-4	chr8	111677772	111678772	+	618.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11402.0	NR_106044	102466993.0		NR_106044	ENSMUSG00000099129	Mir7076	Gm27318|mmu-mir-7076	microRNA 7076	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139401122-3	chr7	139400614	139401614	+	618.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355162, intron 1 of 15)	intron (NM_001355162, intron 1 of 15)	620.0	NM_001355162	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165613901-2	chr1	165613401	165614401	+	618.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	20640.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86891206-2	chr12	86890706	86891706	+	618.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6392.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96475301-3	chr3	96474901	96475901	+	618.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23095.0	NM_001256181	329716.0	Mm.275223	NM_183223	ENSMUSG00000046317	BC107364	D730018G16	cDNA sequence BC107364	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr1-59247768-2	chr1	59247317	59248317	+	618.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCTTG)n|Simple_repeat|Simple_repeat	-9089.0	NM_001033373	271697.0	Mm.297713	NM_001033373	ENSMUSG00000026023	Cdk15	Als2cr7|Pftk2	cyclin-dependent kinase 15	protein-coding	1.0	2.0	0.5	2.0	2.0	1.0
Merged-chr2-113821824-2	chr2	113821314	113822314	+	618.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009162, intron 2 of 5)	MTB|LTR|ERVL-MaLR	7277.0	NM_009162	20394.0	Mm.4836	NM_009162	ENSMUSG00000023236	Scg5	7B2|AI325031|Sgne-1|Sgne1	secretogranin V	protein-coding	4.0	0.0	1.5	0.0	3.0	1.0
Merged-chr7-4508341-2	chr7	4507841	4508841	+	618.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360154, intron 10 of 12)	intron (NM_001360154, intron 10 of 12)	-6661.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120298904-2	chr11	120298404	120299404	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48509.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	0.0	0.0	0.0	3.5	3.5	0.5
Merged-chr11-32540567-2	chr11	32540067	32541067	+	618.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	(GGGTG)n|Simple_repeat|Simple_repeat	7301.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	1.0	5.0	5.5	0.0	7.5	3.5
Merged-chr18-35757465-1	chr18	35756965	35757965	+	618.0	f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-14094.0	NM_019912	56550.0	Mm.180052	NM_019912	ENSMUSG00000091896	Ube2d2a	1500034D03Rik|Ubc2e|Ube2d2|ubc4	ubiquitin-conjugating enzyme E2D 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-36934366-2	chr8	36933866	36934866	+	618.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 2 of 17)	ORR1C2|LTR|ERVL-MaLR	18076.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	10.0	8.5	7.0	6.5	7.5	14.5
Merged-chr12-110500491-2	chr12	110499991	110500991	+	618.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081457, intron 1 of 12)	intron (NM_001081457, intron 1 of 12)	14752.0	NM_012023	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133686565-2	chr4	133686071	133687071	+	618.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080819, intron 15 of 19)	intron (NM_001080819, intron 15 of 19)	-13405.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	0.0	1.0	3.0	5.0	0.0	3.5
Merged-chr16-49796498-1	chr16	49795998	49796998	+	618.0	f0_balb.idr	Intergenic	Intergenic	-59156.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31076885-1	chr17	31076385	31077385	+	618.0	f1_balb.idr	intron (NM_009593, intron 2 of 14)	B1_Mus1|SINE|Alu	19191.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-26065265-1	chr16	26064765	26065765	+	618.0	f0_balb.idr	intron (NM_173379, intron 1 of 14)	intron (NM_173379, intron 1 of 14)	40519.0	NM_173379	210530.0	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17222111-1	chr12	17221611	17222611	+	618.0	f1_balb.idr	Intergenic	Intergenic	-44484.0	NM_027959	71853.0	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	0.0	1.0	6.5	8.0	1.5	2.5
Merged-chr3-14873486-1	chr3	14872986	14873986	+	618.0	f1_c57bl6.idr	Intergenic	Intergenic	9948.0	NM_007606	12350.0	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	1.0	15.5	0.0	0.0	3.0	3.5
Merged-chr2-118246154-1	chr2	118245654	118246654	+	618.0	f1_c57bl6.idr	intron (NM_027759, intron 5 of 10)	intron (NM_027759, intron 5 of 10)	10812.0	NM_027759	71313.0	Mm.85046	NM_027759	ENSMUSG00000027344	Fsip1	1700012M13Rik|4933432K11Rik	fibrous sheath-interacting protein 1	protein-coding	2.0	0.0	4.0	1.0	0.0	0.5
Merged-chr4-86579679-1	chr4	86579179	86580179	+	618.0	f0_balb.idr	3' UTR (NM_173400, exon 17 of 17)	3' UTR (NM_173400, exon 17 of 17)	4006.0	NM_178376	68441.0	Mm.31178	NM_178376	ENSMUSG00000070934	Rraga	1300010C19Rik|AI255374|FIP-1|RAGA	Ras-related GTP binding A	protein-coding	9.0	15.0	9.5	5.5	13.0	9.0
Merged-chr1-149893071-2	chr1	149892571	149893571	+	618.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 5 of 17)	MTC|LTR|ERVL-MaLR	29368.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-78920641-1	chr3	78920141	78921141	+	618.0	f1_balb.idr	Intergenic	Intergenic	224246.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.0	0.0	2.5	1.5	2.0	0.0
Merged-chr3-127971033-1	chr3	127970533	127971533	+	618.0	f0_balb.idr	Intergenic	Intergenic	54862.0	NR_040552	329753.0	Mm.119720	NR_040552	ENSMUSG00000104763	9830132P13Rik	9830132P13	RIKEN cDNA 9830132P13 gene	ncRNA	9.0	5.0	4.0	3.5	6.5	0.5
Merged-chr9-47642159-1	chr9	47641659	47642659	+	618.0	f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	111807.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	49.0	124.0	84.5	44.5	112.5	82.5
Merged-chr16-49797076-1	chr16	49796576	49797576	+	618.0	f0_c57.idr	Intergenic	ERV3-16A3_LTR|LTR|ERVL	-58578.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-45018957-2	chr10	45018457	45019457	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48257.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93474200-2	chr2	93473700	93474700	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11250.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0.0	0.0	0.0	0.0	4.0	0.0
Merged-chr2-35197520-2	chr2	35197020	35198020	+	618.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026697, intron 1 of 7)	B1_Mus2|SINE|Alu	3600.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-52112505-2	chr1	52112005	52113005	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6933.0	NM_001357627	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62427355-2	chr10	62426855	62427855	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4898.0	NM_145419	216019.0	Mm.213213	NM_145419	ENSMUSG00000020080	Hkdc1	BC016235	hexokinase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5781454-2	chr13	5780954	5781954	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	76638.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139377202-2	chr5	139376702	139377702	+	618.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033147)	promoter-TSS (NR_033147)	-495.0	NM_001362206	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78302891-1	chr15	78302391	78303391	+	618.0	f1_c57bl6.idr	intron (NM_001287389, intron 1 of 11)	intron (NM_001287389, intron 1 of 11)	2830.0	NM_007781	12984.0	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	1.0	6.5	14.0	5.5	27.5	14.5
Merged-chr16-23314150-2	chr16	23313650	23314650	+	618.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252506, intron 1 of 6)	(TTTG)n|Simple_repeat|Simple_repeat	23680.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46619932-2	chr4	46619432	46620432	+	618.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198664, intron 6 of 12)	intron (NM_198664, intron 6 of 12)	-18003.0	NM_001164804	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	2.5	0.0	1.5	6.0	0.0	0.0
Merged-chr9-89909382-2	chr9	89908882	89909882	+	618.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039655)	promoter-TSS (NM_001039655)	-393.0	NM_001357744	19417.0	Mm.44561	NM_011245	ENSMUSG00000032356	Rasgrf1	AI844718|CDC25|CDC25Mm|Gnrp|Grf1|Grfbeta|P190-A|Ras-GRF1|p190|p190RhoGEF	RAS protein-specific guanine nucleotide-releasing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47646260-2	chr14	47645734	47646734	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-3077.0	NM_001347527	16709.0	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	3.5	22.5	18.5	2.0	3.0	10.5
Merged-chr7-99956351-1	chr7	99955851	99956851	+	618.0	f0_balb.idr	intron (NM_175388, intron 1 of 5)	intron (NM_175388, intron 1 of 5)	24107.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-79405299-1	chr13	79404799	79405799	+	618.0	f1_balb.idr	Intergenic	Lx3A|LINE|L1	-1206426.0	NM_010151	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-190168906-2	chr1	190168391	190169391	+	618.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008937, intron 1 of 4)	intron (NM_008937, intron 1 of 4)	624.0	NM_001360827	19130.0	Mm.132579	NM_008937	ENSMUSG00000010175	Prox1	A230003G05Rik|PROX-1	prospero homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125359795-2	chr5	125359295	125360295	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18701.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153878106-2	chr2	153877606	153878606	+	618.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025631, intron 2 of 15)	intron (NM_025631, intron 2 of 15)	3061.0	NM_025631	66557.0	Mm.46448	NM_025631	ENSMUSG00000027481	Bpifb2	2310034L21Rik|2310069A01Rik|AV089125|Bpil1|LPLUNC2|RYSR	BPI fold containing family B, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-145175750-1	chr5	145175250	145176250	+	618.0	f1_c57bl6.idr	intron (NM_001291249, intron 4 of 7)	intron (NM_001291249, intron 4 of 7)	8537.0	NM_001291248	54188.0	Mm.196884	NM_178576	ENSMUSG00000029625	Cpsf4	30kDa|C79664	cleavage and polyadenylation specific factor 4	protein-coding	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr15-98849410-2	chr15	98848910	98849910	+	618.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033276, exon 35 of 55)	exon (NM_001033276, exon 35 of 55)	-17902.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156660463-1	chr1	156659963	156660963	+	618.0	f1_c57bl6.idr	intron (NM_023141, intron 4 of 5)	intron (NM_023141, intron 4 of 5)	13876.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	2.0	20.0	4.5	6.0	10.5	3.5
Merged-chr10-68104207-1	chr10	68103707	68104707	+	618.0	f1_balb.idr	intron (NM_023598, intron 8 of 9)	intron (NM_023598, intron 8 of 9)	124637.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	1.5	0.5	0.0	1.5	0.5	0.0
Merged-chr15-76658883-2	chr15	76658383	76659383	+	618.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358909)	promoter-TSS (NM_001358909)	853.0	NM_001276333	54151.0	Mm.247752	NM_019396	ENSMUSG00000053929	Cyhr1	1110031M01Rik|AU042374|Chrp	cysteine and histidine rich 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-185355262-1	chr1	185354762	185355762	+	618.0	f1_c57bl6.idr	intron (NM_001347210, intron 9 of 9)	MTC|LTR|ERVL-MaLR	-7782.0	NM_029735	107508.0	Mm.154511	NM_029735	ENSMUSG00000026615	Eprs	2410081F06Rik|3010002K18Rik|C79379|Qprs	glutamyl-prolyl-tRNA synthetase	protein-coding	0.0	0.0	5.5	0.5	0.0	1.0
Merged-chr12-21325687-1	chr12	21325187	21326187	+	618.0	f1_balb.idr	intron (NM_001291871, intron 18 of 18)	intron (NM_001291871, intron 18 of 18)	9295.0	NM_026347	67732.0	Mm.335830	NM_026347	ENSMUSG00000062054	Iah1	1500019E20Rik|4833421E05Rik	isoamyl acetate-hydrolyzing esterase 1 homolog	protein-coding	3.5	1.0	2.0	4.0	4.5	12.0
Merged-chr2-38350486-2	chr2	38349986	38350986	+	618.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010710)	promoter-TSS (NM_010710)	-822.0	NM_010710	16870.0	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29382250-1	chr17	29381750	29382750	+	618.0	f1_c57bl6.idr	Intergenic	Intergenic	21336.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	15.5	11.5	15.0	0.0	2.5	8.5
Merged-chr15-12313478-2	chr15	12312978	12313978	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8018.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25089203-2	chr12	25088706	25089706	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR15|LTR|ERVK	6886.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	0.0	3.0	0.0	0.0	1.0	1.0
Merged-chr9-124426460-2	chr9	124425960	124426960	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	2673.0	NR_015516	75135.0	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22537366-1	chr16	22536866	22537866	+	618.0	f0_balb.idr	intron (NM_001346673, intron 19 of 23)	intron (NM_001346673, intron 19 of 23)	-5182.0	NR_106170	102465887.0		NR_106170	ENSMUSG00000099071	Mir8095	Gm27566|mmu-mir-8095	microRNA 8095	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11559475-1	chr11	11558975	11559975	+	618.0	f0_balb.idr	Intergenic	Intergenic	68363.0	NM_001305143	102631730.0	Mm.159430	NM_001305143	ENSMUSG00000062511	4930512M02Rik	-	RIKEN cDNA 4930512M02 gene	protein-coding	2.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20632857-1	chr11	20632357	20633357	+	618.0	f0_c57.idr	intron (NM_001038625, intron 1 of 1)	intron (NM_001038625, intron 1 of 1)	880.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	41.5	94.0	84.0	42.5	113.0	87.5
Merged-chr4-152151566-2	chr4	152151066	152152066	+	618.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207687, intron 1 of 15)	intron (NM_207687, intron 1 of 15)	641.0	NM_207687	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88713965-2	chr10	88713465	88714465	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	17136.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-69186189-2	chr16	69185689	69186689	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	614192.0	NR_130991	78110.0	Mm.211406	NR_130991	ENSMUSG00000107073	4930428D20Rik	Gm43265	RIKEN cDNA 4930428D20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr7-30638576-1	chr7	30638076	30639076	+	618.0	f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2724.0	NM_007959	14008.0	Mm.4829	NM_007959	ENSMUSG00000006311	Etv2	Etsrp71	ets variant 2	protein-coding	0.0	0.0	3.0	0.0	0.0	0.0
Merged-chr18-38566436-2	chr18	38565936	38566936	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34832.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-193796640-2	chr1	193796140	193797140	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-289110.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100102323-4	chr15	100101823	100102823	+	618.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037311, intron 2 of 3)	intron (NR_037311, intron 2 of 3)	-52073.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106762681-1	chr11	106762181	106763181	+	618.0	f0_balb.idr	intron (NR_073165, intron 6 of 9)	intron (NR_073165, intron 6 of 9)	11455.0	NM_001033435	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-67920114-1	chr14	67919614	67920614	+	618.0	f0_balb.idr	intron (NM_177780, intron 1 of 51)	intron (NM_177780, intron 1 of 51)	13458.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83193696-1	chr6	83193196	83194196	+	618.0	f1_c57bl6.idr	intron (NM_007835, intron 18 of 31)	intron (NM_007835, intron 18 of 31)	7750.0	NM_001347310	13191.0	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150<glued>	dynactin 1	protein-coding	0.0	2.5	0.0	0.0	0.0	3.5
Merged-chr16-34321090-2	chr16	34320590	34321590	+	618.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 6 of 59)	intron (NM_177357, intron 6 of 59)	192937.0	NM_001164268	545156.0	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-89020090-1	chr11	89019590	89020590	+	618.0	f0_balb.idr	3' UTR (NM_009546, exon 9 of 9)	3' UTR (NM_009546, exon 9 of 9)	20687.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	43.0	80.0	64.0	37.5	65.5	56.0
Merged-chr16-95716069-2	chr16	95715569	95716569	+	618.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011809, exon 8 of 10)	exon (NM_011809, exon 8 of 10)	13662.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66115682-1	chr5	66115182	66116182	+	618.0	f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-17503.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	15.5	30.0	36.0	20.0	28.0	39.5
Merged-chr11-77469148-2	chr11	77468648	77469648	+	618.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_139130, exon 9 of 10)	exon (NM_139130, exon 9 of 10)	5235.0	NM_139130	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155404332-2	chr2	155403832	155404832	+	618.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001242558, intron 9 of 12)	MIRb|SINE|MIR	22476.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	80.0	158.5	127.0	118.5	180.5	147.5
Merged-chr5-64318961-2	chr5	64318460	64319460	+	618.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 13 of 18)	B4A|SINE|B4	88603.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	8.5	6.0	3.0	4.0	0.0	8.5
Merged-chr10-61312957-2	chr10	61312457	61313457	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15121.0	NM_011073	18646.0	Mm.240313	NM_011073	ENSMUSG00000037202	Prf1	Pfn|Pfp|Prf-1	perforin 1 (pore forming protein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55051200-1	chr1	55050700	55051700	+	618.0	f1_balb.idr	Intergenic	Intergenic	-1570.0	NM_026424	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	16.0	13.0	12.0	11.0	32.0	7.0
Merged-chr12-32487047-2	chr12	32486547	32487547	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108258.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	5.0	2.0	1.5	1.5	0.5	4.5
Merged-chr14-8213197-2	chr14	8212697	8213697	+	618.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027782)	promoter-TSS (NM_027782)	-884.0	NM_027782	71393.0	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106327606-2	chr9	106327109	106328109	+	618.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 9 of 10)	intron (NM_027354, intron 9 of 10)	-41023.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	0.0	0.0	0.5	3.0	0.0	0.0
Merged-chr14-92988276-1	chr14	92987776	92988776	+	618.0	f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	902393.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.0	1.0	3.5	3.0	6.5	1.0
Merged-chr16-70333278-2	chr16	70332787	70333787	+	618.0	f0_c57.idr|f1_balb.idr	intron (NM_028803, intron 1 of 15)	AT_rich|Low_complexity|Low_complexity	19338.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	1.5	7.0	0.5	1.5	1.5	0.0
Merged-chr7-125582144-1	chr7	125581644	125582644	+	618.0	f1_balb.idr	Intergenic	Intergenic	-21285.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	18.0	25.5	38.0	7.5	10.5	16.5
Merged-chr7-66232822-1	chr7	66232322	66233322	+	618.0	f0_balb.idr	Intergenic	Intergenic	123307.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118934048-2	chr9	118933543	118934543	+	618.0	f0_balb.idr|f1_balb.idr	intron (NM_133710, intron 1 of 7)	ORR1D2|LTR|ERVL-MaLR	7507.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	3.5	1.5	2.0	4.5	6.0	13.0
Merged-chr7-75797838-1	chr7	75797338	75798338	+	618.0	f1_c57bl6.idr	Intergenic	LTRIS2|LTR|ERV1	-50500.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101685104-1	chr13	101684604	101685604	+	618.0	f0_balb.idr	intron (NM_001024955, intron 9 of 9)	intron (NM_001024955, intron 9 of 9)	7526.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42537847-1	chr19	42537347	42538347	+	618.0	f0_c57.idr	intron (NM_177464, intron 1 of 6)	intron (NM_177464, intron 1 of 6)	19042.0	NM_177464	52013.0	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	1.5	3.5	0.5	1.5	8.0	1.0
Merged-chr7-120933826-2	chr7	120933326	120934326	+	618.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164096, intron 10 of 19)	intron (NM_001164096, intron 10 of 19)	16082.0	NM_001164096	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74663828-2	chr11	74663328	74664328	+	618.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081158, exon 12 of 26)	exon (NM_001081158, exon 12 of 26)	14333.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	0.0	1.0	0.0	0.0	0.5	2.0
Merged-chr15-20888517-2	chr15	20888025	20889025	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-221775.0	NM_022816	64833.0	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding	0.0	0.0	1.5	0.5	0.0	0.0
Merged-chr15-78929944-2	chr15	78929444	78930444	+	618.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008495, intron 3 of 3)	intron (NM_008495, intron 3 of 3)	3219.0	NM_008495	16852.0	Mm.43831	NM_008495	ENSMUSG00000068220	Lgals1	AA410090|Gal-1|Galbp|L-14.5|L14|Lect14|galectin-1	lectin, galactose binding, soluble 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-83549560-2	chr12	83549060	83550060	+	618.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359167, intron 12 of 12)	intron (NM_001359167, intron 12 of 12)	12900.0	NM_001359168	217695.0	Mm.59257	NM_183154	ENSMUSG00000042628	Zfyve1	DFCP1|G630053K23|TAFF1|ZNFN2A1|mKIAA1589	zinc finger, FYVE domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23722659-1	chr17	23722159	23723159	+	618.0	f1_balb.idr	Intergenic	Intergenic	-3677.0	NM_023058	268930.0	Mm.182193	NM_023058	ENSMUSG00000023908	Pkmyt1	6230424P17|AW209059|Myt1	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-41595194-1	chr15	41594694	41595694	+	618.0	f0_balb.idr	intron (NR_152565, intron 2 of 17)	intron (NR_152565, intron 2 of 17)	146091.0	NM_001358977	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-21531819-2	chr18	21531319	21532319	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-119746.0	NM_001271580	74644.0	Mm.329311	NM_001271580		4930426D05Rik	-	RIKEN cDNA 4930426D05 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-34532664-2	chr15	34532164	34533164	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37353.0	NM_152894	67724.0	Mm.248779	NM_026340	ENSMUSG00000022325	Pop1	4932434G09Rik	processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25269192-1	chr7	25268692	25269692	+	618.0	f0_balb.idr	intron (NM_001302811, intron 1 of 20)	intron (NM_001302811, intron 1 of 20)	1493.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60687237-2	chr18	60686737	60687737	+	618.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001348101, exon 15 of 15)	3' UTR (NM_001348101, exon 15 of 15)	23827.0	NR_045401	328963.0	Mm.417203	NR_045401		G630071F17Rik	G630071F17	RIKEN cDNA G630071F17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90072744-1	chr7	90072244	90073244	+	618.0	f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	43585.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	0.0	13.0	2.0	4.0	15.0	3.5
Merged-chr7-102927308-1	chr7	102926808	102927808	+	618.0	f0_balb.idr	promoter-TSS (NM_147089)	promoter-TSS (NM_147089)	-322.0	NM_147089	259093.0	Mm.377837	NM_147089	ENSMUSG00000073963	Olfr572	MOR10-2	olfactory receptor 572	protein-coding	1.5	1.0	4.0	0.0	3.5	2.5
Merged-chr7-97764767-3	chr7	97764272	97765272	+	617.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23769.0	NM_001357365	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	8.5	16.5	16.0	2.5	11.5	9.0
Merged-chr11-43569436-3	chr11	43568939	43569939	+	617.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045530, intron 3 of 5)	intron (NM_001045530, intron 3 of 5)	32123.0	NM_008375	16204.0	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-3234512-2	chr16	3234002	3235002	+	617.875	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-357896.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79016602-2	chr11	79016102	79017102	+	617.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 17 of 17)	intron (NM_013571, intron 17 of 17)	-6995.0	NR_045873	790910.0	Mm.440410	NR_045873		Gm11201	-	predicted gene 11201	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-3031268-2	chr9	3030771	3031771	+	617.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	7472.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121408859-2	chr10	121408359	121409359	+	617.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43769.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78599914-2	chr15	78599425	78600425	+	617.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028195, intron 1 of 12)	intron (NM_028195, intron 1 of 12)	2878.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	2.0	30.5	3.5	4.0	12.5	13.0
Merged-chr10-81264452-2	chr10	81263952	81264952	+	617.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025317)	TTS (NM_025317)	2474.0	NM_025317	66047.0	Mm.43397	NM_025317	ENSMUSG00000034932	Mrpl54	0610008M19Rik|D10Sut1e	mitochondrial ribosomal protein L54	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74664472-3	chr11	74663998	74664998	+	617.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081158, intron 13 of 25)	intron (NM_001081158, intron 13 of 25)	15003.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	0.0	1.0	0.0	0.0	0.5	2.0
Merged-chr2-181582598-2	chr2	181582098	181583098	+	617.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026765)	promoter-TSS (NM_026765)	-625.0	NM_026765	68556.0	Mm.232400	NM_026765	ENSMUSG00000089917	Uckl1	1110007H10Rik|Urkl1	uridine-cytidine kinase 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-37164689-3	chr14	37164154	37165154	+	617.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29332.0	NM_078478	66092.0	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38905214-2	chr6	38904714	38905714	+	617.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13772.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40433337-2	chr12	40432837	40433837	+	617.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172575, intron 1 of 12)	MLT1C|LTR|ERVL-MaLR	12453.0	NM_172575	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-104980710-2	chr5	104980210	104981210	+	617.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_030239, intron 1 of 15)	intron (NM_030239, intron 1 of 15)	2007.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	2.0	13.0	6.0	0.0	4.5	2.0
Merged-chr17-36235440-2	chr17	36234940	36235940	+	617.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTRETN_Mm|LTR|ERVK	22406.0	NM_026308	67676.0	Mm.27131	NM_026308	ENSMUSG00000024446	Rpp21	0610037N01Rik	ribonuclease P 21 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129095402-4	chr6	129094899	129095899	+	617.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153506, intron 2 of 4)	intron (NM_153506, intron 2 of 4)	5504.0	NM_153506	232409.0	Mm.30870	NM_153506	ENSMUSG00000030155	Clec2e	Clra|clr-a	C-type lectin domain family 2, member e	protein-coding	0.0	0.0	3.5	0.0	1.0	0.0
Merged-chr2-11508678-4	chr2	11508119	11509119	+	617.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	B1_Mus1|SINE|Alu	-6529.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-129270211-1	chr3	129269711	129270711	+	617.666687	f0_balb.idr	3' UTR (NM_007934, exon 20 of 20)	3' UTR (NM_007934, exon 20 of 20)	56279.0	NM_001042502	18741.0	Mm.246804	NM_011098	ENSMUSG00000028023	Pitx2	9430085M16Rik|Brx1|Brx1b|Munc30|Otlx2|Ptx2|Rieg	paired-like homeodomain transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36087886-3	chr1	36087388	36088388	+	617.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	19488.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8240317-3	chr10	8239829	8240829	+	617.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 7 of 7)	intron (NM_177387, intron 7 of 7)	278496.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84391096-3	chr17	84390606	84391606	+	617.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 25 of 37)	ORR1E|LTR|ERVL-MaLR	75102.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103308543-2	chr15	103308043	103309043	+	617.625	f1_balb.idr|f1_c57bl6.idr	exon (NM_030720, exon 2 of 2)	exon (NM_030720, exon 2 of 2)	1895.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43936132-3	chr1	43935640	43936640	+	617.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009418, intron 1 of 29)	intron (NM_009418, intron 1 of 29)	2146.0	NM_009418	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97719337-3	chr11	97718841	97719841	+	617.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054051, intron 9 of 9)	intron (NM_054051, intron 9 of 9)	15907.0	NM_011971	26446.0	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	38.0	53.5	58.5	26.0	39.0	64.0
Merged-chr6-83416519-1	chr6	83416019	83417019	+	617.5	f0_balb.idr	intron (NM_001347313, intron 3 of 11)	intron (NM_001347313, intron 3 of 11)	-15417.0	NR_105793	102465194.0		NR_105793	ENSMUSG00000099045	Mir6374	Gm27292|mmu-mir-6374	microRNA 6374	ncRNA	7.0	11.0	7.5	1.0	6.0	8.5
Merged-chr5-43897950-3	chr5	43897444	43898444	+	617.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	RMER1B|Other|Other	29135.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	1.0	14.0	5.5	0.0	8.0	0.5
Merged-chr10-66919806-2	chr10	66919306	66920306	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_138560, intron 1 of 4)	RMER17C|LTR|ERVK	578.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131055238-2	chr1	131054738	131055738	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 9 of 9)	intron (NM_008551, intron 9 of 9)	35393.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139353647-2	chr5	139353147	139354147	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160265, intron 1 of 8)	intron (NM_001160265, intron 1 of 8)	1030.0	NM_001160265	545817.0	Mm.482474	NM_001160265	ENSMUSG00000029541	Cyp2w1	Gm455	cytochrome P450, family 2, subfamily w, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135569519-2	chr5	135568988	135569988	+	617.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019577)	TTS (NM_019577)	3561.0	NM_019577	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	35.5	78.0	39.0	37.0	121.5	91.0
Merged-chr4-3051350-2	chr4	3050851	3051851	+	617.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120732.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112943459-2	chr12	112942959	112943959	+	617.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1317.0	NM_001316724	66174.0	Mm.7070	NM_025399	ENSMUSG00000002804	Nudt14	1110030M18Rik|UGPPase	nudix (nucleoside diphosphate linked moiety X)-type motif 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124540003-2	chr5	124539503	124540503	+	617.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019770)	promoter-TSS (NM_019770)	-788.0	NM_019770	56334.0	Mm.325307	NM_019770	ENSMUSG00000029390	Tmed2	1110032D12Rik|1810020N21Rik|Rnp24|Sid394|p24beta1	transmembrane p24 trafficking protein 2	protein-coding	0.5	1.5	0.5	0.5	3.0	0.0
Merged-chr1-170714547-1	chr1	170714047	170715047	+	617.5	f0_balb.idr	intron (NM_001081304, intron 15 of 15)	L1_Mus2|LINE|L1	70015.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97235442-2	chr15	97234942	97235942	+	617.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11665.0	NM_172293	239647.0	Mm.130036	NM_172293	ENSMUSG00000044250	Pced1b	Fam113b	PC-esterase domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-52723969-2	chr15	52723469	52724469	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027212, intron 3 of 3)	intron (NM_027212, intron 3 of 3)	11524.0	NM_027212	69790.0	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-72048843-2	chr10	72048343	72049343	+	617.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-68153.0	NR_003644	108950.0	Mm.212793	NM_175390		1700049L16Rik	-	hematological and neurological expressed 1-like pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103009253-2	chr14	103008753	103009753	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 2 of 2)	intron (NR_045657, intron 2 of 2)	24550.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-85052069-2	chr2	85051569	85052569	+	617.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081260, exon 3 of 12)	exon (NM_001081260, exon 3 of 12)	1609.0	NM_001081260	228140.0	Mm.23606	NM_001081260	ENSMUSG00000033955	Tnks1bp1	Tab182|mKIAA1741	tankyrase 1 binding protein 1	protein-coding	3.0	0.0	0.5	0.0	1.5	1.0
Merged-chr7-105372981-2	chr7	105372481	105373481	+	617.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001242363, exon 13 of 13)	3' UTR (NM_001242363, exon 13 of 13)	-2057.0	NM_001195727	100503879.0	Mm.380109	NM_001195727	ENSMUSG00000078611	Gm5901	EG545989	predicted gene 5901	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34261288-2	chr11	34260788	34261788	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 38 of 51)	L2a|LINE|L2	-53199.0	NM_023907	14233.0	Mm.32926	NM_023907	ENSMUSG00000047861	Foxi1	5830401E05Rik|FREAC6|Fkh10|HFH-3|Hfh3	forkhead box I1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-114638703-2	chr9	114638203	114639203	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153585, intron 1 of 19)	intron (NM_153585, intron 1 of 19)	1497.0	NM_153585	78893.0	Mm.283708	NM_153585	ENSMUSG00000056167	Cnot10	2600001P13Rik	CCR4-NOT transcription complex, subunit 10	protein-coding	1.0	0.0	2.0	0.0	8.0	2.0
Merged-chr5-64243129-2	chr5	64242629	64243629	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	12772.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-4486306-2	chr5	4485806	4486806	+	617.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	271910.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152577085-2	chr1	152576585	152577585	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	48132.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-123998951-2	chr10	123998451	123999451	+	617.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-470123.0	NR_028310	75030.0	Mm.159403	NR_028310	ENSMUSG00000112364	4930503E24Rik	-	eukaryotic translation initiation factor 3, subunit I pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-62473678-2	chr12	62473178	62474178	+	617.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-214109.0	NR_131949	73309.0	Mm.276558	NR_131949		Spanxn4	1700047L15Rik	SPANX family, member N4	ncRNA	0.0	1.5	0.0	0.5	0.0	1.0
Merged-chr17-15208274-2	chr17	15207774	15208774	+	617.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32509.0	NR_046164	328747.0	Mm.256835	NR_046164	ENSMUSG00000097624	Gm5091	C330048F19	predicted gene 5091	ncRNA	0.0	0.0	1.5	0.0	0.0	1.5
Merged-chr6-83536994-2	chr6	83536494	83537494	+	617.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009610)	promoter-TSS (NM_009610)	-743.0	NM_009610	11468.0	Mm.292865	NM_009610	ENSMUSG00000059430	Actg2	ACTA3|Act-4|Act4|SMGA	actin, gamma 2, smooth muscle, enteric	protein-coding	0.0	0.0	0.0	0.0	8.5	0.0
Merged-chr6-5819773-2	chr6	5819273	5820273	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010063, intron 6 of 16)	intron (NM_010063, intron 6 of 16)	94134.0	NM_001191026	13426.0	Mm.20893	NM_010063	ENSMUSG00000029757	Dync1i1	DH IC-1|DHIC-1|DIC|Dncic1|IC74	dynein cytoplasmic 1 intermediate chain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43955137-2	chr19	43954637	43955637	+	617.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-14939.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	1.5	0.0	2.5	0.0	0.0	1.0
Merged-chr5-29681863-3	chr5	29681364	29682364	+	617.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-54034.0	NM_001359198	23950.0	Mm.290110	NM_011847	ENSMUSG00000029131	Dnajb6	HSJ-2|Mrj|mDj4	DnaJ heat shock protein family (Hsp40) member B6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-63417291-2	chr10	63416791	63417791	+	617.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-12807.0	NM_177612	216033.0	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116466852-2	chr4	116466352	116467352	+	617.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2671.0	NM_008641	17776.0	Mm.9287	NM_008641	ENSMUSG00000003810	Mast2	MAST205|Mtssk	microtubule associated serine/threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141064746-2	chr4	141064246	141065246	+	617.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4201.0	NM_001145958	230872.0	Mm.80685	NM_172122	ENSMUSG00000040860	Crocc	-	ciliary rootlet coiled-coil, rootletin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128388167-2	chr2	128387667	128388667	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	41184.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0.0	4.0	2.5	1.5	0.0	3.0
Merged-chr6-31129316-2	chr6	31128816	31129816	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-66223.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92649247-2	chr16	92648747	92649747	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111023, intron 3 of 5)	intron (NM_001111023, intron 3 of 5)	48082.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	4.5	1.5	4.5	10.5	0.0	2.5
Merged-chr11-52101101-2	chr11	52100601	52101601	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019411, intron 1 of 6)	URR1A|DNA|hAT-Charlie	2277.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3490040-2	chr5	3489540	3490540	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	L1_Mur3|LINE|L1	-53793.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-24075875-2	chr11	24075375	24076375	+	617.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2181.0	NM_016707	14025.0	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120035823-2	chr11	120035323	120036323	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198785, intron 1 of 13)	ORR1A1|LTR|ERVL-MaLR	5958.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	0.0	17.5	4.0	10.5	4.5	3.5
Merged-chr7-45055143-2	chr7	45054643	45055643	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022999, intron 5 of 6)	intron (NM_022999, intron 5 of 6)	-2262.0	NM_175022	233210.0	Mm.219137	NM_175022	ENSMUSG00000046574	Prr12	6720469B10|BC058674	proline rich 12	protein-coding	4.0	21.5	2.0	0.0	2.0	15.0
Merged-chr9-47721226-1	chr9	47720726	47721726	+	617.5	f0_c57.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	96982.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	3.5	0.0	0.0	0.0	2.5	2.0
Merged-chr11-53852034-2	chr11	53851534	53852534	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 1 of 3)	intron (NR_033332, intron 1 of 3)	7222.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-144788859-2	chr6	144788359	144789359	+	617.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	115991.0	NR_040519	66760.0	Mm.233631	NR_040519	ENSMUSG00000085785	Sox5os3	4933425H06Rik	SRY (sex determining region Y)-box 5, opposite strand 3	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78452409-2	chr17	78451909	78452909	+	617.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	-34257.0	NM_001285940	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-71771289-1	chr9	71770789	71771789	+	617.5	f1_balb.idr	5' UTR (NM_001304362, exon 1 of 19)	5' UTR (NM_001304362, exon 1 of 19)	313.0	NM_026599	68178.0	Mm.99961	NM_026599	ENSMUSG00000032232	Cgnl1	4933421H10Rik|9930020M10Rik|AI503810|Jacop	cingulin-like 1	protein-coding	1.5	2.0	0.5	1.5	4.0	1.0
Merged-chr2-91484309-2	chr2	91483809	91484809	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 16 of 37)	intron (NM_172668, intron 16 of 37)	26778.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	13.5	29.0	27.0	17.0	17.0	22.0
Merged-chr7-25080412-2	chr7	25079912	25080912	+	617.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001168506, exon 3 of 3)	exon (NM_001168506, exon 3 of 3)	3605.0	NM_175477	232976.0	Mm.41568	NM_175477	ENSMUSG00000045252	Zfp574	A630056B21Rik|Znf574	zinc finger protein 574	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57762118-2	chr15	57761618	57762618	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 1 of 3)	intron (NM_199449, intron 1 of 3)	67451.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-140990881-2	chr4	140990381	140991381	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164366, intron 1 of 28)	B4A|SINE|B4	4008.0	NM_001164366	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166484530-2	chr2	166484030	166485030	+	617.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	37079.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-80740738-2	chr8	80740238	80741238	+	617.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1279.0	NM_053124	93762.0	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-58375347-2	chr14	58374847	58375847	+	617.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	302661.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-99110703-2	chr4	99110203	99111203	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026082, intron 1 of 47)	intron (NM_026082, intron 1 of 47)	10212.0	NM_001290636	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	7.0	1.0	1.5	3.0	2.0	2.0
Merged-chr4-132024016-2	chr4	132023516	132024516	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	ORR1B1|LTR|ERVL-MaLR	25062.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-108354704-2	chr14	108354204	108355204	+	617.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	559535.0	NM_199065	76965.0	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6735616-2	chr17	6735116	6736116	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183368, intron 7 of 8)	RSINE1|SINE|B4	29786.0	NM_183368	83672.0	Mm.442201	NM_031395	ENSMUSG00000041831	Sytl3	A430092N21|Slp3|Slp3-a|Slp3-b|mFLJ00307	synaptotagmin-like 3	protein-coding	0.0	0.5	0.0	0.0	1.5	0.0
Merged-chr4-149789422-2	chr4	149788922	149789922	+	617.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15155.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-103441025-2	chr5	103440525	103441525	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011204, intron 1 of 47)	intron (NM_011204, intron 1 of 47)	15833.0	NM_011204	19249.0	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-101957309-2	chr12	101956809	101957809	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029705, intron 1 of 10)	intron (NM_029705, intron 1 of 10)	934.0	NM_029705	110616.0	Mm.271914	NM_029705	ENSMUSG00000021189	Atxn3	2210008M02Rik|AI463012|AI647473|ATX3|MJD1|Mjd|Sca3|ataxin-3	ataxin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-88005743-2	chr18	88005243	88006243	+	617.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	888464.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69104587-2	chr11	69104087	69105087	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159367, intron 16 of 22)	intron (NM_001159367, intron 16 of 22)	4435.0	NM_001159367	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-124843654-3	chr4	124843136	124844136	+	617.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008636, intron 10 of 10)	intron (NM_008636, intron 10 of 10)	6928.0	NM_001347196	68920.0	Mm.272397	NM_001142727	ENSMUSG00000078570	1110065P20Rik	C530005M16Rik	RIKEN cDNA 1110065P20 gene	protein-coding	2.0	0.0	2.0	0.0	0.5	0.5
Merged-chr9-118488408-4	chr9	118487894	118488894	+	617.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10205.0	NM_010136	13813.0	Mm.200692	NM_010136	ENSMUSG00000032446	Eomes	C77258|TBR-2|Tbr2	eomesodermin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119325642-2	chr2	119325142	119326142	+	617.375	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019454)	promoter-TSS (NM_019454)	-142.0	NM_019454	54485.0	Mm.143719	NM_019454	ENSMUSG00000027314	Dll4	Delta4	delta like canonical Notch ligand 4	protein-coding	0.0	0.0	6.5	0.0	2.5	0.0
Merged-chr7-110552504-3	chr7	110552007	110553007	+	617.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 2 of 40)	intron (NM_177324, intron 2 of 40)	62413.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-26833556-3	chr10	26833088	26834088	+	617.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	61076.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16329874-3	chr1	16329367	16330367	+	617.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111272, intron 11 of 12)	intron (NM_001111272, intron 11 of 12)	189248.0	NM_001347044	29819.0	Mm.216257	NM_025303	ENSMUSG00000025920	Stau2	-	staufen double-stranded RNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9218021-3	chr3	9217504	9218504	+	617.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32563.0	NM_177660	229055.0	Mm.103262	NM_177660	ENSMUSG00000069114	Zbtb10	4832414A18|AU021107|RINZF	zinc finger and BTB domain containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-4004184-3	chr6	4003686	4004686	+	617.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_025331, exon 1 of 2)	5' UTR (NM_025331, exon 1 of 2)	199.0	NM_025331	66066.0	Mm.25547	NM_025331	ENSMUSG00000032766	Gng11	0610037B21Rik	guanine nucleotide binding protein (G protein), gamma 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128877637-2	chr4	128877137	128878137	+	617.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6503.0	NM_178110	67525.0	Mm.30653	NM_178110	ENSMUSG00000041000	Trim62	6330414G21Rik|AI450348|Dear1	tripartite motif-containing 62	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155733394-4	chr4	155732876	155733876	+	617.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026899, intron 4 of 4)	intron (NM_026899, intron 4 of 4)	-1428.0	NM_001101506	381582.0	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	39.5	64.5	112.0	41.0	65.0	113.5
Merged-chr6-31160228-2	chr6	31159728	31160728	+	617.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 2 of 3)	intron (NR_110471, intron 2 of 3)	58246.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95796760-2	chr11	95796260	95797260	+	617.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-27740.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132517992-2	chr4	132517492	132518492	+	617.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-7536.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135940606-2	chr4	135940106	135941106	+	617.166687	f1_balb.idr|f1_c57bl6.idr	TTS (NM_024243)	TTS (NM_024243)	-5842.0	NM_008254	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-127776734-2	chr8	127776234	127777234	+	617.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	477082.0	NM_001013580	93742.0	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78604590-2	chr17	78604090	78605090	+	617.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001197028, intron 8 of 12)	intron (NM_001197028, intron 8 of 12)	96527.0	NM_028813	74199.0	Mm.292983	NM_028813	ENSMUSG00000024076	Vit	1700052E02Rik|1700110E08Rik|2810429K11Rik|AKH|akhirin	vitrin	protein-coding	5.5	0.0	3.5	0.0	5.0	1.0
Merged-chr5-83795783-2	chr5	83795283	83796283	+	617.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_T|LINE|L1	-440588.0	NM_153801	243078.0	Mm.126783	NM_153801	ENSMUSG00000049537	Tecrl	D330017N19Rik|Srd5a2l2	trans-2,3-enoyl-CoA reductase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115374306-3	chr11	115373804	115374804	+	617.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6548.0	NM_001346774	217310.0	Mm.205707	NM_175454	ENSMUSG00000034586	Hid1	C630004H02Rik	HID1 domain containing	protein-coding	0.0	0.0	0.0	2.5	0.0	0.0
Merged-chr4-94901859-3	chr4	94901354	94902354	+	617.044434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26989.0	NM_027089	67753.0	Mm.25097	NM_027089	ENSMUSG00000028575	Eqtn	1700028B15Rik|4930579C15Rik|Afaf|C81058|Eqtl|Eqts	equatorin, sperm acrosome associated	protein-coding	10.5	26.5	29.5	21.0	31.0	22.5
Merged-chr5-36577260-1	chr5	36576760	36577760	+	617.0	f1_c57bl6.idr	intron (NM_001113362, intron 2 of 14)	intron (NM_001113362, intron 2 of 14)	5137.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	45.0	155.0	99.0	104.5	125.5	83.0
Merged-chr11-116642859-2	chr11	116642359	116643359	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	11454.0	NM_030206	114886.0	Mm.34598	NM_030206	ENSMUSG00000020810	Cygb	3110001K20Rik|HGb|Staap	cytoglobin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-75431445-1	chr9	75430945	75431945	+	617.0	f1_c57bl6.idr	Intergenic	Intergenic	-10079.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	2.0	0.0	0.5	5.0	0.0	0.5
Merged-chr6-145069592-1	chr6	145069092	145070092	+	617.0	f1_balb.idr	intron (NM_007532, intron 1 of 10)	intron (NM_007532, intron 1 of 10)	6565.0	NM_007532	12035.0	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	3.5	6.0	2.0	3.5	7.5	5.5
Merged-chr17-27814727-1	chr17	27814227	27815227	+	617.0	f1_balb.idr	intron (NM_001033279, intron 1 of 4)	intron (NM_001033279, intron 1 of 4)	5815.0	NM_001033279	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	4.0	1.0	0.0	0.0	1.0	0.0
Merged-chr12-80001944-1	chr12	80001444	80002444	+	617.0	f0_balb.idr	Intergenic	Intergenic	-65680.0	NR_131074	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139368764-1	chr4	139368264	139369264	+	617.0	f1_balb.idr	intron (NM_146157, intron 18 of 23)	B3A|SINE|B2	-11895.0	NM_001160319	69116.0	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	0.0	0.0	2.5	0.0	6.0	0.0
Merged-chr5-14515084-1	chr5	14514584	14515584	+	617.0	f0_balb.idr	5' UTR (NM_011995, exon 1 of 25)	5' UTR (NM_011995, exon 1 of 25)	166.0	NM_001110796	26875.0	Mm.146275	NM_011995	ENSMUSG00000061601	Pclo	Acz|Pico	piccolo (presynaptic cytomatrix protein)	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr7-28753300-2	chr7	28752800	28753800	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023637, intron 15 of 15)	intron (NM_023637, intron 15 of 15)	-2874.0	NM_001195091	100504112.0	Mm.379654	NM_001195091	ENSMUSG00000096257	Ccer2	EG624918|Gm6537	coiled-coil glutamate-rich protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-77419510-2	chr17	77419010	77420010	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B2|LTR|ERVK	-780738.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108019979-1	chr3	108019479	108020479	+	617.0	f1_c57bl6.idr	Intergenic	Intergenic	-2006.0	NM_010358	14862.0	Mm.37199	NM_010358	ENSMUSG00000058135	Gstm1	Gstb-1|Gstb1	glutathione S-transferase, mu 1	protein-coding	1.5	0.0	5.0	0.0	2.0	1.0
Merged-chr8-44960298-2	chr8	44959798	44960798	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081286, intron 1 of 25)	MIR|SINE|MIR	10090.0	NM_001081286	14107.0	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT atypical cadherin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181695148-2	chr2	181694648	181695648	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1171.0	NM_001291209	56470.0	Mm.274366	NM_026446	ENSMUSG00000002458	Rgs19	2610042F04Rik|AI324841|AW547781|GAIP	regulator of G-protein signaling 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28024316-2	chr17	28023816	28024816	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 12 of 24)	intron (NM_181413, intron 12 of 24)	56268.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0.0	0.0	7.5	0.0	0.0	0.0
Merged-chr5-97013581-1	chr5	97013081	97014081	+	617.0	f1_c57bl6.idr	intron (NM_080708, intron 1 of 15)	intron (NM_080708, intron 1 of 15)	15892.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	3.5	2.0	4.5	0.0	0.0	5.0
Merged-chr15-25353762-2	chr15	25353262	25354262	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60002.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-113475522-1	chr2	113475022	113476022	+	617.0	f0_balb.idr	intron (NM_001285459, intron 2 of 16)	intron (NM_001285459, intron 2 of 16)	34458.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	11.0	33.5	8.5	21.5	20.5	13.5
Merged-chr1-151756711-2	chr1	151756211	151757211	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311165, intron 1 of 20)	intron (NM_001311165, intron 1 of 20)	1337.0	NM_001311166	66967.0	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10284747-1	chr19	10284247	10285247	+	617.0	f0_balb.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	20130.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	0.0	0.0	2.0	0.0	0.0	2.0
Merged-chr4-132923864-2	chr4	132923392	132924392	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1341.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	0.0	1.5	3.0	0.0	0.0	0.0
Merged-chr16-70777235-1	chr16	70776735	70777735	+	617.0	f1_balb.idr	Intergenic	Intergenic	160810.0	NR_040474	52645.0	Mm.188475	NR_040474		D16Ertd519e	-	DNA segment, Chr 16, ERATO Doi 519, expressed	ncRNA	0.0	0.5	1.5	0.0	0.0	5.0
Merged-chr16-87688250-2	chr16	87687750	87688750	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10704.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158497835-1	chr2	158497335	158498335	+	617.0	f1_balb.idr	3' UTR (NM_001291138, exon 30 of 30)	3' UTR (NM_001291138, exon 30 of 30)	-4777.0	NM_145635	246747.0	Mm.28800	NM_145635	ENSMUSG00000044405	Adig	SMAF-1|Smaf1	adipogenin	protein-coding	14.0	28.0	27.5	14.0	25.0	20.5
Merged-chr6-88064330-2	chr6	88063830	88064830	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-19060.0	NM_009005	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25149305-2	chr15	25148805	25149805	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	264459.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-172438639-2	chr2	172438139	172439139	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-1939.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6743670-2	chr17	6743170	6744170	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 7 of 12)	intron (NM_009510, intron 7 of 12)	37840.0	NM_183368	83672.0	Mm.442201	NM_031395	ENSMUSG00000041831	Sytl3	A430092N21|Slp3|Slp3-a|Slp3-b|mFLJ00307	synaptotagmin-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-87679233-2	chr10	87678733	87679733	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	157438.0	NM_008777	18478.0	Mm.263539	NM_008777	ENSMUSG00000020051	Pah	AW106920	phenylalanine hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100726086-1	chr15	100725586	100726586	+	617.0	f1_balb.idr	intron (NM_172451, intron 1 of 11)	(TG)n|Simple_repeat|Simple_repeat	3290.0	NM_001161767	207839.0	Mm.22969	NM_172451	ENSMUSG00000037280	Galnt6	4632410F13|AW047994|GalNAc-T6	polypeptide N-acetylgalactosaminyltransferase 6	protein-coding	0.0	4.5	5.0	7.5	2.0	0.0
Merged-chr8-71664274-2	chr8	71663774	71664774	+	617.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001029873, exon 4 of 42)	exon (NM_001029873, exon 4 of 42)	7483.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	0.0	0.0	0.0	3.5	0.0	4.5
Merged-chr2-92968474-2	chr2	92967974	92968974	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53373.0	NM_030725	80976.0	Mm.33490	NM_030725	ENSMUSG00000027220	Syt13	5730409J20Rik|AI549909|mKIAA1427	synaptotagmin XIII	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150543831-1	chr4	150543331	150544331	+	617.0	f1_balb.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	108343.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.5	0.0	0.5	2.0	1.0	0.5
Merged-chr10-26752799-2	chr10	26752299	26753299	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19713.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-54016356-1	chr10	54015856	54016856	+	617.0	f0_balb.idr	intron (NM_008548, intron 4 of 12)	intron (NM_008548, intron 4 of 12)	59440.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41709664-2	chr13	41709164	41710164	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103448.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-104017578-1	chr2	104017078	104018078	+	617.0	f1_c57bl6.idr	intron (NM_175161, intron 3 of 4)	B3|SINE|B2	-10221.0	NM_020593	57443.0	Mm.143768	NM_020593	ENSMUSG00000027180	Fbxo3	1200002G09Rik|1700026K02Rik|AI046358|Fba	F-box protein 3	protein-coding	3.0	0.0	2.0	0.0	13.5	0.0
Merged-chr13-62919814-2	chr13	62919314	62920314	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31532.0	NM_019395	14121.0	Mm.423078	NM_019395	ENSMUSG00000069805	Fbp1	Fbp-2|Fbp2|Fbp3	fructose bisphosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-62679670-1	chr1	62679170	62680170	+	617.0	f0_balb.idr	Intergenic	RMER10A|LTR|ERVL	-23647.0	NM_001077406	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-58553079-1	chr3	58552579	58553579	+	617.0	f1_c57bl6.idr	intron (NM_001005509, intron 11 of 13)	intron (NM_001005509, intron 11 of 13)	-23557.0	NM_001040396	69227.0	Mm.270950	NM_001040396	ENSMUSG00000075700	Selenot	2810407C02Rik|5730408P04Rik|Selt	selenoprotein T	protein-coding	1.0	9.0	0.5	6.0	4.0	0.0
Merged-chr8-13075024-2	chr8	13074524	13075524	+	617.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001357220, exon 8 of 8)	3' UTR (NM_001357220, exon 8 of 8)	14116.0	NM_001357220	66901.0	Mm.441140	NM_025834	ENSMUSG00000031445	Proz	1300015B06Rik	protein Z, vitamin K-dependent plasma glycoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28435381-2	chr7	28434881	28435881	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175021, intron 1 of 12)	intron (NM_175021, intron 1 of 12)	810.0	NM_175021	233033.0	Mm.54120	NM_175021	ENSMUSG00000109336	Samd4b	BC042901	sterile alpha motif domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45009578-1	chr13	45009078	45010078	+	617.0	f1_balb.idr	Intergenic	Intergenic	-7482.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	3.0	4.0	2.5	0.0	7.5	0.0
Merged-chr3-31083368-2	chr3	31082868	31083868	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-11690.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-99336948-1	chr13	99336448	99337448	+	617.0	f1_balb.idr	intron (NM_026873, intron 3 of 9)	B4A|SINE|B4	7730.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	3.0	8.5	11.0	2.5	2.0	2.0
Merged-chr5-142456916-2	chr5	142456416	142457416	+	617.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_199068, exon 9 of 9)	3' UTR (NM_199068, exon 9 of 9)	-7015.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25643046-1	chr14	25642546	25643546	+	617.0	f1_balb.idr	intron (NM_183208, intron 7 of 23)	intron (NM_183208, intron 7 of 23)	39533.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	0.5	2.0	9.0	1.0	9.0	1.0
Merged-chr6-120838507-1	chr6	120838007	120839007	+	617.0	f1_balb.idr	intron (NM_153516, intron 1 of 6)	B1_Mus2|SINE|Alu	2277.0	NM_153516	94044.0	Mm.27990	NM_153516	ENSMUSG00000009112	Bcl2l13	BCL-RAMBO|E430016C20Rik|Mil-1|Mil1	BCL2-like 13 (apoptosis facilitator)	protein-coding	0.0	0.0	2.5	5.5	1.0	2.0
Merged-chr8-104240451-2	chr8	104239951	104240951	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045642, intron 4 of 8)	L2a|LINE|L2	8107.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-30354400-2	chr6	30353900	30354900	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	36620.0	NM_172735	232679.0	Mm.29780	NM_172735	ENSMUSG00000039130	Zc3hc1	1110054L24Rik|AU018540|AU019789|HSPC216|Nipa	zinc finger, C3HC type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101965760-2	chr7	101965260	101966260	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4083.0	NM_133947	101706.0	Mm.27259	NM_133947	ENSMUSG00000066306	Numa1	6720401E04Rik|AA764025|AL022610|AU014979|NuMA	nuclear mitotic apparatus protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141146747-2	chr4	141146247	141147247	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1175.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79177778-1	chr3	79177278	79178278	+	617.0	f0_c57.idr	Intergenic	L1M3|LINE|L1	-31903.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	54.0	100.0	95.5	41.5	118.5	85.5
Merged-chr3-130711729-2	chr3	130711229	130712229	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2285.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-41371023-3	chr8	41370546	41371546	+	617.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019734, intron 1 of 13)	intron (NM_019734, intron 1 of 13)	3651.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	38.5	46.0	29.5	4.5	18.0	13.5
Merged-chr5-34207123-2	chr5	34206623	34207623	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 8 of 12)	intron (NM_001015039, intron 8 of 12)	-19413.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43431322-2	chr4	43430822	43431822	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2188.0	NM_001162381	329831.0	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	5.5	0.0	0.0	5.5	0.0	0.0
Merged-chr5-144761596-2	chr5	144761096	144762096	+	617.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177735)	promoter-TSS (NM_177735)	-18.0	NM_177735	243339.0	Mm.126793	NM_177735	ENSMUSG00000043388	Tmem130	BC067004|C130036G08	transmembrane protein 130	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102076502-2	chr5	102076002	102077002	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-6581.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-114898793-2	chr4	114898293	114899293	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10105.0	NM_008593	17301.0	Mm.7997	NM_008593	ENSMUSG00000055210	Foxd2	AI426778|Mf2	forkhead box D2	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr12-51848606-1	chr12	51848106	51849106	+	617.0	f1_balb.idr	Intergenic	RSINE1|SINE|B4	-19070.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	0.0	4.0	0.0	0.0	1.5	4.5
Merged-chr17-34004209-1	chr17	34003709	34004709	+	617.0	f1_balb.idr	Intergenic	MT2B1|LTR|ERVL	-3862.0	NM_001347346	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	0.5	0.0	6.5	0.0	0.0	0.0
Merged-chr8-123028531-2	chr8	123028031	123029031	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	13753.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	53.0	143.0	60.0	41.5	76.5	57.5
Merged-chr1-63180279-2	chr1	63179779	63180779	+	617.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018796, exon 6 of 6)	3' UTR (NM_018796, exon 6 of 6)	1256.0	NR_028558	100217464.0	Mm.484706	NR_028558	ENSMUSG00000064602	Snora41	MBI-83	small nucleolar RNA, H/ACA box 41	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64746855-2	chr1	64746355	64747355	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9105.0	NM_022721	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84888850-1	chr2	84888350	84889350	+	617.0	f0_balb.idr	Intergenic	Intergenic	-2158.0	NM_199223	269295.0	Mm.86447	NM_199223	ENSMUSG00000050896	Rtn4rl2	Ngr2|Ngrh1|Ngrl3	reticulon 4 receptor-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59531977-2	chr11	59531477	59532477	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-9592.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34629291-1	chr17	34628791	34629791	+	617.0	f1_balb.idr	promoter-TSS (NM_030890)	promoter-TSS (NM_030890)	-395.0	NM_030890	260297.0	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31|SynDIG4	proline-rich transmembrane protein 1	protein-coding	0.0	3.0	3.5	1.5	1.0	0.0
Merged-chr13-74891265-1	chr13	74890765	74891765	+	617.0	f1_balb.idr	Intergenic	RLTR28|LTR|ERVL	-82505.0	NM_001301153	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	3.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-94680950-2	chr3	94680466	94681466	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	-12607.0	NM_019414	20342.0	Mm.225405	NM_019414	ENSMUSG00000068877	Selenbp2	AP56|Lpsb2	selenium binding protein 2	protein-coding	1.5	1.5	0.0	0.5	0.0	0.0
Merged-chr12-108630177-3	chr12	108629681	108630681	+	617.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163395, intron 1 of 12)	intron (NM_001163395, intron 1 of 12)	-5572.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-89987258-1	chr11	89986758	89987758	+	617.0	f1_c57bl6.idr	exon (NM_008796, exon 4 of 6)	exon (NM_008796, exon 4 of 6)	15636.0	NM_008796	18559.0	Mm.5062	NM_008796	ENSMUSG00000020553	Pctp	PC-TP|StarD2	phosphatidylcholine transfer protein	protein-coding	0.0	2.5	8.5	0.0	0.0	1.5
Merged-chr5-139822145-2	chr5	139821645	139822645	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4749.0	NM_001356963	66506.0	Mm.29070	NM_025604	ENSMUSG00000029551	Psmg3	1810042K04Rik|4930403H09Rik|AI303239	proteasome (prosome, macropain) assembly chaperone 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-108418814-2	chr11	108418314	108419314	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6452.0	NM_029606	76380.0	Mm.344071	NM_029586	ENSMUSG00000020728	Cep112	1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco	centrosomal protein 112	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-66103925-1	chr17	66103425	66104425	+	617.0	f1_c57bl6.idr	Intergenic	(TCC)n|Simple_repeat|Simple_repeat	-2366.0	NM_028388	72900.0	Mm.2206	NM_028388	ENSMUSG00000024099	Ndufv2	2900010C23Rik	NADH dehydrogenase (ubiquinone) flavoprotein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13832528-2	chr16	13832028	13833028	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346110, intron 7 of 7)	intron (NM_001346110, intron 7 of 7)	13277.0	NM_001346111	18203.0	Mm.380410	NM_010946	ENSMUSG00000022681	Ntan1	PNAA|PNAD	N-terminal Asn amidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59037783-1	chr4	59037283	59038283	+	617.0	f1_balb.idr	intron (NM_025277, intron 1 of 2)	intron (NM_025277, intron 1 of 2)	2627.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	2.5	3.0	0.0	2.5	11.0	6.0
Merged-chr4-62205424-1	chr4	62204924	62205924	+	617.0	f0_balb.idr	intron (NM_001290351, intron 1 of 3)	intron (NM_001290351, intron 1 of 3)	2778.0	NM_001290353	22696.0	Mm.5011	NM_009554	ENSMUSG00000028389	Zfp37	Tzn|Zfp-37	zinc finger protein 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80041199-1	chr11	80040699	80041699	+	617.0	f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	39792.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96635663-2	chr15	96635163	96636163	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166458, intron 1 of 15)	B2_Mm2|SINE|B2	6299.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-18406070-2	chr9	18405570	18406570	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360216, intron 1 of 1)	MT2B|LTR|ERVL	1652.0	NM_001360216	546118.0	Mm.380138	NM_001033793	ENSMUSG00000074502	Ubtfl1	B020006M18Rik|Hmgpi	upstream binding transcription factor, RNA polymerase I-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72587683-1	chr8	72587183	72588183	+	617.0	f1_c57bl6.idr	TTS (NM_001357278)	TTS (NM_001357278)	15860.0	NM_001357279	74166.0	Mm.212927	NM_144534	ENSMUSG00000031791	Tmem38a	1110001E17Rik|AI413399|SPR-27|TRIC-A|mg33a	transmembrane protein 38A	protein-coding	28.0	44.0	45.0	7.0	4.0	10.0
Merged-chr8-25098932-2	chr8	25098432	25099432	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 1 of 11)	intron (NM_031257, intron 1 of 11)	2879.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88248807-1	chr1	88248307	88249307	+	617.0	f0_balb.idr	intron (NM_001281466, intron 27 of 41)	intron (NM_001281466, intron 27 of 41)	20601.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-43888840-2	chr16	43888340	43889340	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029128, intron 1 of 7)	intron (NM_029128, intron 1 of 7)	836.0	NM_029128	106248.0	Mm.275354	NM_029128	ENSMUSG00000022704	Qtrt2	3110012M05Rik|4930470H18Rik|AI648807|Qrtr2|Qtrtd1	queuine tRNA-ribosyltransferase accessory subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80129534-2	chr10	80129034	80130034	+	617.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001195268)	TTS (NM_001195268)	7853.0	NM_001195268	100503659.0	Mm.485395	NM_015761	ENSMUSG00000035640	Cbarp	9630008F14|Dos|R29144/1	calcium channel, voltage-dependent, beta subunit associated regulatory protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70791612-1	chr14	70791112	70792112	+	617.0	f0_c57.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	17231.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	6.5	17.0	5.0	1.0	8.0	3.0
Merged-chr7-84810085-1	chr7	84809585	84810585	+	617.0	f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-43486.0	NM_146415	258410.0	Mm.484702	NM_146415	ENSMUSG00000070460	Olfr291	MOR254-2	olfactory receptor 291	protein-coding	4.0	0.0	0.0	2.0	0.0	0.0
Merged-chr18-4288794-1	chr18	4288294	4289294	+	617.0	f0_balb.idr	Intergenic	RLTR11A2|LTR|ERVK	64159.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61143883-2	chr10	61143383	61144383	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009163, intron 2 of 14)	intron (NM_009163, intron 2 of 14)	3801.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79407980-1	chr15	79407480	79408480	+	617.0	f1_balb.idr	Intergenic	B2_Mm2|SINE|B2	-4677.0	NM_172608	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	11.0	17.0	7.5	16.5	36.5	15.0
Merged-chr2-104743518-2	chr2	104743018	104744018	+	617.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144804)	promoter-TSS (NM_144804)	-717.0	NM_144804	211896.0	Mm.288805	NM_144804	ENSMUSG00000027173	Depdc7	AV216087	DEP domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77734653-1	chr9	77734153	77735153	+	617.0	f0_balb.idr	Intergenic	Intergenic	-19882.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	8.0	9.0	4.0	1.0	27.5	13.5
Merged-chr18-80140102-1	chr18	80139602	80140602	+	617.0	f1_balb.idr	intron (NM_175028, intron 2 of 3)	intron (NM_175028, intron 2 of 3)	11380.0	NM_175028	240442.0	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	0.0	0.0	1.0	2.0	0.0	4.5
Merged-chr10-105186817-1	chr10	105186317	105187317	+	617.0	f0_balb.idr	TTS (NM_177368)	TTS (NM_177368)	387662.0	NM_177368	278279.0	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	0.0	2.0	0.0	0.0	1.5	0.5
Merged-chr10-81024977-2	chr10	81024477	81025477	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145217, intron 1 of 1)	intron (NM_145217, intron 1 of 1)	400.0	NM_145217	208666.0	Mm.44995	NM_145217	ENSMUSG00000043670	Diras1	Di-Ras1|Gbts1|RIG	DIRAS family, GTP-binding RAS-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-35759989-2	chr5	35759489	35760489	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177678, intron 1 of 19)	intron (NM_177678, intron 1 of 19)	2109.0	NM_001177698	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	0.0	0.0	1.0	1.0	0.0	0.0
Merged-chr2-133457001-1	chr2	133456501	133457501	+	617.0	f0_balb.idr	Intergenic	Intergenic	-95158.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116704466-2	chr4	116703966	116704966	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025962, intron 3 of 3)	intron (NM_025962, intron 3 of 3)	3919.0	NM_025962	67096.0	Mm.252785	NM_025962	ENSMUSG00000028690	Mmachc	1810037K07Rik|CblC	methylmalonic aciduria cblC type, with homocystinuria	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-94265388-1	chr2	94264888	94265888	+	617.0	f0_c57.idr	Intergenic	Intergenic	-3989.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97984445-2	chr11	97983945	97984945	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163608, intron 1 of 13)	intron (NM_001163608, intron 1 of 13)	2001.0	NM_028199	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114967772-1	chr11	114967272	114968272	+	617.0	f1_c57bl6.idr	Intergenic	Intergenic	-7355.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	112.0	175.0	203.5	68.5	209.0	88.5
Merged-chr14-8189518-2	chr14	8189018	8190018	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER34A1|LTR|ERV1	-16526.0	NM_024221	68263.0	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50114273-2	chr15	50113773	50114773	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	774776.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	2.5	3.0	3.5	11.0	4.0	2.0
Merged-chr7-100230748-3	chr7	100230256	100231256	+	617.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027629, intron 1 of 13)	intron (NM_027629, intron 1 of 13)	3149.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50616559-1	chr17	50616059	50617059	+	617.0	f1_c57bl6.idr	intron (NM_013880, intron 3 of 5)	MTD-int|LTR|ERVL-MaLR	-82122.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	0.0	0.0	1.0	0.0	0.0	2.5
Merged-chr11-79308055-2	chr11	79307555	79308555	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-31837.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	0.0	2.5	1.0	0.0	0.0	0.0
Merged-chr7-35186746-2	chr7	35186246	35187246	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_017394, intron 1 of 10)	intron (NM_017394, intron 1 of 10)	361.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	0.0	3.0	0.0	0.0	0.0	0.0
Merged-chr13-113634857-3	chr13	113634318	113635318	+	617.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR48|LTR|ERV1	-16254.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25022886-2	chr2	25022386	25023386	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146251, intron 20 of 34)	B2_Mm2|SINE|B2	-31493.0	NM_001177654	56876.0	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124041697-1	chr5	124041197	124042197	+	617.0	f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-9437.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0.0	2.0	0.5	0.0	1.5	0.0
Merged-chr2-104035079-3	chr2	104034566	104035566	+	616.972229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355505, intron 3 of 10)	intron (NM_001355505, intron 3 of 10)	-6705.0	NM_175161	70986.0	Mm.460738	NM_175161		4931422A03Rik	-	RIKEN cDNA 4931422A03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106160875-3	chr9	106160359	106161359	+	616.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B2|LTR|ERVL	-2721.0	NM_174846	235582.0	Mm.335420	NM_174846	ENSMUSG00000020258	Glyctk	6230410P16Rik|C430006L12	glycerate kinase	protein-coding	27.0	34.5	51.5	22.5	156.0	69.0
Merged-chr6-128091704-2	chr6	128091204	128092204	+	616.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_175414, intron 1 of 8)	intron (NM_175414, intron 1 of 8)	51874.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147541862-2	chr5	147541342	147542342	+	616.833374	f0_balb.idr|f1_c57bl6.idr	intron (NM_028291, intron 16 of 18)	intron (NM_028291, intron 16 of 18)	111686.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	89.5	177.0	142.5	87.0	151.0	158.5
Merged-chr2-153239938-2	chr2	153239438	153240438	+	616.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_018807, intron 1 of 2)	intron (NM_018807, intron 1 of 2)	1420.0	NM_018807	54711.0	Mm.103199	NM_018807	ENSMUSG00000051413	Plagl2	AU018672|AW552839|mKIAA0198	pleiomorphic adenoma gene-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58568177-2	chr15	58567677	58568677	+	616.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	152709.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91165374-2	chr6	91164874	91165874	+	616.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_144919, intron 3 of 9)	intron (NM_144919, intron 3 of 9)	8559.0	NM_144919	232232.0	Mm.206218	NM_144919	ENSMUSG00000034245	Hdac11	-	histone deacetylase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64083494-2	chr7	64082994	64083994	+	616.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TACTG)n|Simple_repeat|Simple_repeat	-70341.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88285920-2	chr1	88285420	88286420	+	616.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8341.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46044364-4	chr19	46043903	46044903	+	616.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113408, intron 1 of 10)	intron (NM_001113408, intron 1 of 10)	908.0	NM_001113408	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	0.0	3.5	7.0	0.0	2.5	1.0
Merged-chr14-82550683-2	chr14	82550183	82551183	+	616.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2A1|LINE|L1	1524607.0	NR_153783	102635012.0	Mm.399509	NR_153783	ENSMUSG00000115043	Gm32455	-	predicted gene, 32455	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90289667-2	chr16	90289167	90290167	+	616.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5164.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165705598-2	chr1	165705098	165706098	+	616.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	2496.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132573006-2	chr4	132572506	132573506	+	616.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081211, intron 1 of 1)	intron (NM_001081211, intron 1 of 1)	8939.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-133497127-2	chr2	133496627	133497627	+	616.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55032.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93244589-1	chr10	93244089	93245089	+	616.666687	f1_balb.idr	Intergenic	Intergenic	66570.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	2.0	2.5	3.0	8.0	5.5	3.0
Merged-chr10-41489214-3	chr10	41488738	41489738	+	616.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009213, intron 3 of 9)	intron (NM_009213, intron 3 of 9)	1102.0	NM_009213	20598.0	Mm.953	NM_009213	ENSMUSG00000019822	Smpd2	AW108287|nSMase|nSMase1	sphingomyelin phosphodiesterase 2, neutral	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77821511-3	chr18	77821010	77822010	+	616.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 1 of 14)	intron (NM_013831, intron 1 of 14)	-25120.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	1.0	10.5	6.0	0.0	0.0	0.5
Merged-chr13-60668911-2	chr13	60668481	60669481	+	616.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	66770.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	21.5	28.5	15.0	7.0	11.0	18.0
Merged-chr4-3765316-2	chr4	3764816	3765816	+	616.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	50352.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184478681-2	chr1	184478181	184479181	+	616.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79010.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0.0	2.0	3.0	0.0	2.0	3.5
Merged-chr15-25692519-3	chr15	25692033	25693033	+	616.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 2 of 40)	PB1D10|SINE|Alu	-60673.0	NM_001353142	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109123873-3	chr3	109123358	109124358	+	616.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172685, intron 1 of 9)	intron (NM_172685, intron 1 of 9)	709.0	NM_172685	229731.0	Mm.33574	NM_172685	ENSMUSG00000040322	Slc25a24	2610016M12Rik	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3291813-2	chr7	3291315	3292315	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001093765, intron 1 of 2)	intron (NM_001093765, intron 1 of 2)	-1213.0	NM_001093766	50918.0	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	2.5	6.0	8.0	0.0	5.0	5.5
Merged-chr11-107391689-2	chr11	107391189	107392189	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	B2_Mm1a|SINE|B2	79031.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30063217-2	chr2	30062717	30063717	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023871, intron 1 of 7)	intron (NM_023871, intron 1 of 7)	1221.0	NM_023871	56086.0	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136169980-2	chr1	136169480	136170480	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 29 of 34)	intron (NM_001039472, intron 29 of 34)	38590.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-73950215-2	chr9	73949715	73950715	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16648.0	NM_001081153	208898.0	Mm.41035	NM_001081153	ENSMUSG00000062151	Unc13c	1500037O19Rik|AU019458|D9Ertd414e|Munc13-3|Unc13h3	unc-13 homolog C (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139402808-2	chr5	139402308	139403308	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	-3579.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36019397-2	chr17	36018897	36019897	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008207, intron 1 of 5)	MLT2C1|LTR|ERVL	1163.0	NM_008207	15042.0	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-90258523-2	chr11	90258023	90259023	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026178, intron 2 of 6)	intron (NM_026178, intron 2 of 6)	9047.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6557661-2	chr15	6557161	6558161	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22186.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-30661147-2	chr10	30660647	30661647	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 10 of 14)	intron (NM_001358842, intron 10 of 14)	-5280.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25517614-2	chr9	25517114	25518114	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	Lx6|LINE|L1	36017.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100640219-4	chr11	100639726	100640726	+	616.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177790, intron 1 of 7)	CpG	10467.0	NM_177790	278304.0	Mm.274734	NM_177790	ENSMUSG00000014198	Zfp385c	A930006D11Rik|Znf385c	zinc finger protein 385C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-80579231-2	chr16	80578731	80579731	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	579855.0	NM_030146	78654.0		NM_030146		1700066C05Rik	-	RIKEN cDNA 1700066C05 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149191896-2	chr4	149191396	149192396	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207682, intron 37 of 46)	GA-rich|Low_complexity|Low_complexity	-25191.0	NM_001081274	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55202756-2	chr13	55202256	55203256	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-7026.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	12.5	69.0	55.5	12.5	67.5	56.0
Merged-chr7-30614623-2	chr7	30614132	30615132	+	616.5	f0_balb.idr|f0_c57.idr	Intergenic	B3A|SINE|B2	-1898.0	NM_026815	109637.0	Mm.25471	NM_026815	ENSMUSG00000006313	Upk1a	1110031P12Rik|AU019298|C87192|Tspan21|Upk1	uroplakin 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-179435671-2	chr1	179435171	179436171	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027188, intron 1 of 11)	intron (NM_027188, intron 1 of 11)	82370.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-4759815-2	chr13	4759312	4760312	+	616.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-150648.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	7.0	6.5	8.0	10.5	10.5	24.5
Merged-chr10-61878039-2	chr10	61877539	61878539	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304757, intron 16 of 37)	intron (NM_001304757, intron 16 of 37)	-94175.0	NM_207000	404634.0	Mm.272870	NM_207000	ENSMUSG00000020086	H2afy2	macroH2A2	H2A histone family, member Y2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8611330-2	chr4	8610830	8611830	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	75686.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	4.0	3.0	0.0	4.0	3.0	0.0
Merged-chr6-89365567-2	chr6	89365067	89366067	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2954.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36645190-2	chr16	36644690	36645690	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	20887.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-46702947-2	chr14	46702447	46703447	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29172.0	NR_131909	328385.0	Mm.271545	NR_131909	ENSMUSG00000115015	D330046F09Rik	Gm808	RIKEN cDNA D330046F09 gene	ncRNA	1.5	0.5	0.0	0.0	0.0	0.0
Merged-chr9-4723800-2	chr9	4723300	4724300	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113181, intron 3 of 10)	L1_Mus2|LINE|L1	72434.0	NM_001113180	14802.0	Mm.209263	NM_019691	ENSMUSG00000025892	Gria4	GluA4|GluR-D|Glur-4|Glur4|Gluralpha4|spkw1	glutamate receptor, ionotropic, AMPA4 (alpha 4)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-65729053-2	chr11	65728553	65729553	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316368, intron 3 of 10)	intron (NM_001316368, intron 3 of 10)	5779.0	NR_030417	791070.0		NR_030417	ENSMUSG00000076460	Mir744	Mirn744|mir-744|mmu-mir-744	microRNA 744	ncRNA	3.5	0.0	0.0	3.5	0.0	0.0
Merged-chr17-28515280-2	chr17	28514780	28515780	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	-15581.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-48168807-2	chr18	48168307	48169307	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	123472.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97188058-2	chr15	97187558	97188558	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20814.0	NR_155279	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-54121307-2	chr10	54120807	54121807	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45385.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21151078-2	chr9	21150578	21151578	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1172.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139811686-2	chr5	139811186	139812186	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161548, intron 2 of 8)	intron (NM_001161548, intron 2 of 8)	1557.0	NM_144914	231832.0	Mm.482655	NM_144914	ENSMUSG00000036687	Tmem184a	Sdmg1	transmembrane protein 184a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113793800-2	chr5	113793300	113794300	+	616.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_146162)	TTS (NM_146162)	6552.0	NM_146162	231633.0	Mm.41681	NM_146162	ENSMUSG00000054675	Tmem119	AW208946|BC025600|obif	transmembrane protein 119	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51566860-2	chr3	51566360	51567360	+	616.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033624, exon 5 of 5)	non-coding (NR_033624, exon 5 of 5)	-6037.0	NM_080793	73251.0	Mm.192111	NM_080793	ENSMUSG00000037111	Setd7	1600028F23Rik|H3K4MT|KMT7|Set7|Set7/9|mKIAA1717	SET domain containing (lysine methyltransferase) 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122483318-2	chr8	122482818	122483818	+	616.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153775)	TTS (NM_153775)	7175.0	NR_152823	66965.0	Mm.482288	NM_153775	ENSMUSG00000049482	Ctu2	2310061F22Rik|C16orf84|Ncs2	cytosolic thiouridylase subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46498093-2	chr17	46497593	46498593	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207161, intron 1 of 3)	intron (NM_207161, intron 1 of 3)	1304.0	NM_207161	381101.0	Mm.35801	NM_207161	ENSMUSG00000040658	Dnph1	C76683|Rcl	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117395014-2	chr10	117394514	117395514	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18041.0	NM_001310609	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	3.0	4.0	4.0	2.5	0.0	1.0
Merged-chr19-61222689-2	chr19	61222189	61223189	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	5729.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0.0	0.0	9.0	0.0	0.0	7.0
Merged-chr9-61233431-2	chr9	61232931	61233931	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60378.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75774083-2	chr10	75773583	75774583	+	616.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010027)	promoter-TSS (NM_010027)	-709.0	NM_010027	13202.0	Mm.298947	NM_010027	ENSMUSG00000001666	Ddt	C78655	D-dopachrome tautomerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30566460-2	chr13	30565960	30566960	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-21144.0	NM_025710	66694.0	Mm.181933	NM_025710	ENSMUSG00000038462	Uqcrfs1	4430402G14Rik|AI875505	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89357654-2	chr15	89357154	89358154	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001115132, intron 1 of 19)	B3A|SINE|B2	1935.0	NM_001271601	52683.0	Mm.143167	NM_001115132	ENSMUSG00000008690	Ncaph2	-	non-SMC condensin II complex, subunit H2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122848300-2	chr8	122847800	122848800	+	616.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007662)	promoter-TSS (NM_007662)	-74.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146913566-1	chr6	146913066	146914066	+	616.5	f0_balb.idr	intron (NM_001355728, intron 1 of 30)	intron (NM_001355728, intron 1 of 30)	25072.0	NM_026221	67533.0	Mm.103382	NM_026221	ENSMUSG00000016487	Ppfibp1	4632409B19Rik|AW214454|AW261454	PTPRF interacting protein, binding protein 1 (liprin beta 1)	protein-coding	3.5	1.0	7.5	0.5	0.5	3.0
Merged-chr4-154410141-2	chr4	154409641	154410641	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291029, intron 3 of 15)	intron (NM_001291029, intron 3 of 15)	-110246.0	NM_001112744	230972.0	Mm.38481	NM_001112744	ENSMUSG00000029032	Arhgef16	-	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128222100-2	chr10	128221596	128222596	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3714.0	NM_008600	17339.0	Mm.31625	NM_008600	ENSMUSG00000025389	Mip	Aqp0|Cat|Cts|Hfi|Lop|MIP26|MP26|Svl|shrivelled	major intrinsic protein of lens fiber	protein-coding	0.0	5.0	0.0	0.0	2.0	0.0
Merged-chr11-23767323-2	chr11	23766823	23767823	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009044, intron 1 of 9)	intron (NM_009044, intron 1 of 9)	3647.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92178363-2	chr1	92177863	92178863	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207225, intron 1 of 26)	intron (NM_207225, intron 1 of 26)	1978.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-93269944-2	chr5	93269444	93270444	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007635, intron 3 of 7)	intron (NM_007635, intron 3 of 7)	2371.0	NM_007635	12452.0	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	2.5	0.5	4.5	0.0	2.0	4.5
Merged-chr4-135381594-2	chr4	135381094	135382094	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145555, intron 1 of 4)	intron (NM_145555, intron 1 of 4)	4078.0	NM_001168498	230822.0	Mm.35548	NM_145555	ENSMUSG00000043924	Ncmap	A330049M08Rik|AA545175|Mp11	noncompact myelin associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92347157-2	chr5	92346657	92347657	+	616.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021274, exon 4 of 4)	3' UTR (NM_021274, exon 4 of 4)	1732.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	8.0	7.5	6.5	12.5	1.0	4.0
Merged-chr6-115594700-2	chr6	115594200	115595200	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2124.0	NM_001101431	70291.0	Mm.133694	NM_001101431	ENSMUSG00000068011	Mkrn2os	2510049J12Rik	makorin, ring finger protein 2, opposite strand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27285933-4	chr7	27285420	27286420	+	616.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	27159.0	NM_010950	18223.0	Mm.458153	NM_010950	ENSMUSG00000063160	Numbl	nbl	numb-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28077842-2	chr17	28077343	28078343	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357681, intron 3 of 9)	B4|SINE|B4	2741.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	2.5	1.0	1.5	1.5	4.0	0.5
Merged-chr10-19160409-2	chr10	19159909	19160909	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_038021, intron 1 of 3)	intron (NR_038021, intron 1 of 3)	-6829.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-56718526-2	chr16	56718026	56719026	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER68|LTR|ERVL	-1076.0	NM_001357126	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129410562-2	chr2	129410054	129411054	+	616.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-39415.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	15.5	7.0	9.5	3.5	7.0	8.5
Merged-chr5-147506964-2	chr5	147506464	147507464	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359433, intron 6 of 19)	intron (NM_001359433, intron 6 of 19)	76808.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	4.0	4.0	3.0	4.5	0.0	0.5
Merged-chr12-56526371-2	chr12	56525871	56526871	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045082, intron 1 of 6)	intron (NR_045082, intron 1 of 6)	3049.0	NR_045082	104798.0	Mm.310950	NR_045082	ENSMUSG00000112343	Sfta3-ps	AI413669|E030019B13Rik|Nanci	surfactant associated 3, pseudogene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-60869024-2	chr1	60868524	60869524	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B2|LTR|ERVK	-40001.0	NM_009843	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94739956-3	chr8	94739444	94740444	+	616.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5740.0	NM_009137	20299.0	Mm.12895	NM_009137	ENSMUSG00000031779	Ccl22	ABCD-1|DCBCK|MDC|Scya22	chemokine (C-C motif) ligand 22	protein-coding	16.0	0.5	0.0	16.0	0.5	0.0
Merged-chr1-186828010-2	chr1	186827510	186828510	+	616.416687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78652.0	NM_026041	67223.0	Mm.289841	NM_026041	ENSMUSG00000001305	Rrp15	2810430M08Rik|5430437H21Rik	ribosomal RNA processing 15 homolog (S. cerevisiae)	protein-coding	3.0	3.0	2.0	0.0	2.0	0.0
Merged-chr1-87650184-2	chr1	87649684	87650684	+	616.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	RMER15|LTR|ERVL	29872.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136181655-2	chr4	136181167	136182167	+	616.333374	f0_balb.idr|f1_balb.idr	intron (NM_177733, intron 4 of 6)	intron (NM_177733, intron 4 of 6)	885.0	NM_001305399	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0.0	0.0	1.5	2.5	3.0	4.5
Merged-chr9-64739878-2	chr9	64739378	64740378	+	616.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2122.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-80000251-2	chr14	79999751	80000751	+	616.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001351947)	promoter-TSS (NM_001351947)	-51.0	NM_001351947	380924.0	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89579600-2	chr6	89579100	89580100	+	616.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 1 of 6)	intron (NM_001167736, intron 1 of 6)	16052.0	NM_025351	66098.0	Mm.20313	NM_025351	ENSMUSG00000030086	Chchd6	0710001P09Rik|1700021B03Rik	coiled-coil-helix-coiled-coil-helix domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4633897-3	chr16	4633401	4634401	+	616.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030205, intron 14 of 27)	intron (NM_030205, intron 14 of 27)	-6044.0	NM_139307	246154.0	Mm.482140	NM_139307	ENSMUSG00000039646	Vasn	2610528G05Rik|Atia|Slitl2	vasorin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-15914474-2	chr7	15913974	15914974	+	616.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7897.0	NM_009156	20364.0	Mm.42829	NM_009156	ENSMUSG00000041571	Selenow	Sepw1|selW	selenoprotein W	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67187520-4	chr15	67187027	67188027	+	616.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10645.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0.5	6.0	4.5	8.5	4.0	5.0
Merged-chr11-115268560-2	chr11	115268016	115269016	+	616.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007997, intron 11 of 11)	intron (NM_007997, intron 11 of 11)	-1273.0	NM_010350	14813.0	Mm.39090	NM_010350	ENSMUSG00000020734	Grin2c	GluN2C|NMDAR2C|NR2C	glutamate receptor, ionotropic, NMDA2C (epsilon 3)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120763724-2	chr14	120763224	120764224	+	616.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-147470.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95210289-2	chr10	95209789	95210789	+	616.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	-64464.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-66778962-2	chr1	66778462	66779462	+	616.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357157, intron 3 of 14)	intron (NM_001357157, intron 3 of 14)	29832.0	NM_001357157	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-46230040-3	chr9	46229554	46230554	+	616.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009692, exon 4 of 4)	exon (NM_009692, exon 4 of 4)	1424.0	NM_009692	11806.0	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	3.0	1.5	1.5	5.0	1.5	1.5
Merged-chr19-20797939-3	chr19	20797518	20798518	+	616.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028953, intron 17 of 20)	intron (NM_028953, intron 17 of 20)	-70462.0	NM_011921	26358.0	Mm.14609	NM_011921	ENSMUSG00000024747	Aldh1a7	AI987940|Ahd2-like|Aldh-pb|Aldh1a4|Aldhpb	aldehyde dehydrogenase family 1, subfamily A7	protein-coding	0.0	0.0	1.0	4.0	0.0	0.0
Merged-chr10-120847040-3	chr10	120846532	120847532	+	616.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177092, intron 4 of 6)	LTR41|LTR|ERVL	-10597.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37956910-2	chr13	37956410	37957410	+	616.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	37298.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	0.0	0.5	4.0	0.0	0.5	4.0
Merged-chr11-30781072-4	chr11	30780563	30781563	+	616.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134013, intron 1 of 46)	ID_B1|SINE|B4	9288.0	NM_134013	103554.0	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	7.0	2.5	3.0	3.5	0.5	5.0
Merged-chr1-106220574-3	chr1	106220048	106221048	+	616.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 1 of 16)	RSINE1|SINE|B4	48679.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116336656-2	chr11	116336166	116337166	+	616.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027258, exon 19 of 19)	3' UTR (NM_027258, exon 19 of 19)	-1312.0	NM_008240	15223.0	Mm.378938	NM_008240	ENSMUSG00000034227	Foxj1	FKHL-13|HFH-4|Hfh4	forkhead box J1	protein-coding	0.0	2.5	1.5	0.0	2.0	1.0
Merged-chr13-110526755-2	chr13	110526255	110527255	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131711.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128335921-2	chr2	128335421	128336421	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028590, intron 1 of 2)	intron (NR_028590, intron 1 of 2)	93430.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	2.0	2.5	0.0	0.5	1.5	2.0
Merged-chr16-32598143-3	chr16	32597667	32598667	+	616.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10729.0	NM_011638	22042.0	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	12.0	8.5	15.5	3.5	8.5	12.5
Merged-chr2-153773739-2	chr2	153773239	153774239	+	616.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007896)	TTS (NM_007896)	-7140.0	NR_036629	100504221.0	Mm.246778	NM_177849	ENSMUSG00000044083	Efcab8	A630008I04|EG329541	EF-hand calcium binding domain 8	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87142392-1	chr17	87141892	87142892	+	616.0	f1_balb.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	34713.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	3.5	27.5	32.0	15.0	35.5	14.5
Merged-chr19-5855819-2	chr19	5855319	5856319	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026169, intron 10 of 10)	intron (NM_026169, intron 10 of 10)	-10339.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32137936-3	chr9	32137437	32138437	+	616.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195632, intron 2 of 21)	intron (NM_001195632, intron 2 of 21)	21801.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-75298071-1	chr9	75297571	75298571	+	616.0	f1_c57bl6.idr	intron (NM_001081322, intron 38 of 40)	intron (NM_001081322, intron 38 of 40)	-8217.0	NM_010313	14697.0	Mm.17604	NM_010313	ENSMUSG00000032192	Gnb5	GBS|Gbeta5|flr	guanine nucleotide binding protein (G protein), beta 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-150115972-1	chr5	150115472	150116472	+	616.0	f1_balb.idr	Intergenic	Intergenic	97297.0	NM_001289566	140498.0	Mm.444643	NM_080468	ENSMUSG00000053368	Rxfp2	Gpr106|Great|Lgr8	relaxin/insulin-like family peptide receptor 2	protein-coding	3.0	22.5	11.0	1.0	4.5	5.0
Merged-chr5-41438195-2	chr5	41437695	41438695	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	269496.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	4.0	0.0	0.0	0.0	0.0	2.0
Merged-chr10-85388921-1	chr10	85388421	85389421	+	616.0	f0_c57.idr	intron (NM_028709, intron 1 of 16)	intron (NM_028709, intron 1 of 16)	2107.0	NM_028709	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	1.0	4.5	1.5	0.0	3.0	0.5
Merged-chr9-94363702-2	chr9	94363202	94364202	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	174379.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	0.5	9.0	1.0	0.0	0.5	0.5
Merged-chr6-31161988-2	chr6	31161488	31162488	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 2 of 3)	intron (NR_110471, intron 2 of 3)	56486.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105504585-2	chr5	105504085	105505085	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14886.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.0	0.0	0.5	4.0	0.0	0.5
Merged-chr13-101995653-2	chr13	101995153	101996153	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-227436.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117289532-2	chr2	117289032	117290032	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 10 of 16)	intron (NM_011246, intron 10 of 16)	39793.0	NM_026620	68215.0	Mm.219389	NM_026620	ENSMUSG00000027349	Fam98b	2610510H03Rik	family with sequence similarity 98, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117243068-1	chr4	117242568	117243568	+	616.0	f1_balb.idr	intron (NM_001145637, intron 1 of 12)	intron (NM_001145637, intron 1 of 12)	8849.0	NM_001145637	381544.0	Mm.23504	NM_001033774	ENSMUSG00000060268	Armh1	1700012C08Rik|Gm1661|Gm1662|Ncrna00082	armadillo-like helical domain containing 1	protein-coding	0.0	0.0	0.0	0.0	2.0	3.0
Merged-chr17-86961102-2	chr17	86960602	86961602	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2009.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79665017-2	chr10	79664517	79665517	+	616.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013591, exon 2 of 5)	exon (NM_013591, exon 2 of 5)	458.0	NM_001358785	17123.0	Mm.391556	NM_013591	ENSMUSG00000020310	Madcam1	AV211525|MAdCAM-1	mucosal vascular addressin cell adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83658238-2	chr11	83657738	83658738	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4346.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62877980-2	chr9	62877480	62878480	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15956.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68867889-2	chr11	68867389	68868389	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-14758.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	0.5	3.5	7.5	0.5	3.5	6.5
Merged-chr1-135732052-2	chr1	135731552	135732552	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007791, intron 1 of 5)	intron (NM_007791, intron 1 of 5)	2885.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-189830868-1	chr1	189830368	189831368	+	616.0	f1_c57bl6.idr	intron (NM_008976, intron 5 of 18)	intron (NM_008976, intron 5 of 18)	91423.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	0.0	3.5	1.5	0.0	0.0	0.0
Merged-chr10-60009771-1	chr10	60009271	60010271	+	616.0	f0_balb.idr	intron (NM_026937, intron 3 of 10)	intron (NM_026937, intron 3 of 10)	6444.0	NM_001199187	69090.0	Mm.155839	NM_026937	ENSMUSG00000044475	Ascc1	1810015P09Rik|AI550520|ASC1p50|CGI-18	activating signal cointegrator 1 complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-93994171-1	chr11	93993671	93994671	+	616.0	f1_balb.idr	Intergenic	B1_Mur4|SINE|Alu	-1920.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	11.0	5.5	16.0	0.5	6.5	5.0
Merged-chr7-44847082-2	chr7	44846582	44847582	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042655, intron 3 of 16)	intron (NM_001042655, intron 3 of 16)	1997.0	NM_001042655	233204.0	Mm.27567	NM_144924	ENSMUSG00000038520	Tbc1d17	BC017607	TBC1 domain family, member 17	protein-coding	1.0	0.0	0.0	2.0	0.0	0.0
Merged-chr1-79820733-3	chr1	79820214	79821214	+	616.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009255, intron 2 of 8)	intron (NM_009255, intron 2 of 8)	37951.0	NM_009255	20720.0	Mm.3093	NM_009255	ENSMUSG00000026249	Serpine2	B230326M24Rik|PAI-1|PI-7|PI7|PN-1|Spi4	serine (or cysteine) peptidase inhibitor, clade E, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129798053-2	chr2	129797555	129798555	+	616.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029452)	TTS (NR_029452)	-2462.0	NM_183262	67333.0	Mm.389329	NM_183262	ENSMUSG00000037885	Stk35	1700054C12Rik|CLIK1|Stk35l1	serine/threonine kinase 35	protein-coding	0.5	0.5	0.0	0.0	0.0	1.5
Merged-chr17-74879709-1	chr17	74879209	74880209	+	616.0	f1_balb.idr	Intergenic	Intergenic	-125820.0	NM_019919	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66286857-3	chr15	66286279	66287279	+	616.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152923)	promoter-TSS (NM_152923)	-555.0	NM_152923	110862.0	Mm.255585	NM_152923	ENSMUSG00000056258	Kcnq3	-	potassium voltage-gated channel, subfamily Q, member 3	protein-coding	2.0	0.0	1.0	2.0	0.0	0.0
Merged-chr12-83690055-2	chr12	83689555	83690555	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008943, intron 1 of 11)	intron (NM_008943, intron 1 of 11)	1492.0	NM_008943	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23816251-2	chr18	23815751	23816751	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	12281.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36016554-1	chr17	36016054	36017054	+	616.0	f0_balb.idr	intron (NM_008207, intron 2 of 5)	intron (NM_008207, intron 2 of 5)	4006.0	NM_008207	15042.0	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-75814816-2	chr3	75814316	75815316	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	142133.0	NM_175193	73124.0	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167736432-2	chr2	167735932	167736932	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45255.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-36041167-3	chr12	36040663	36041663	+	616.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025359, intron 1 of 5)	intron (NM_025359, intron 1 of 5)	1315.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-83753245-2	chr12	83752745	83753745	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10389.0	NM_001205343	170721.0	Mm.133443	NM_130887	ENSMUSG00000021223	Papln	E030033C16Rik	papilin, proteoglycan-like sulfated glycoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-85343043-2	chr5	85342543	85343543	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	722540.0	NM_001345902	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97630729-2	chr11	97630229	97631229	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1013.0	NM_175332	103551.0	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	0.0	6.5	1.0	0.0	0.0	0.0
Merged-chr15-82043794-1	chr15	82043294	82044294	+	616.0	f1_balb.idr	intron (NM_011482, intron 2 of 2)	intron (NM_011482, intron 2 of 2)	3804.0	NM_011482	20826.0	Mm.299312	NM_011482	ENSMUSG00000063480	Snu13	FA-1|Fta1|Nhp2l1|Ssfa1	SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5)	protein-coding	0.0	6.0	0.5	0.0	10.5	0.0
Merged-chr17-21384256-1	chr17	21383756	21384756	+	616.0	f1_c57bl6.idr	intron (NM_172486, intron 1 of 3)	(CAA)n|Simple_repeat|Simple_repeat	508.0	NM_172486	210503.0	Mm.33443	NM_172486	ENSMUSG00000062743	Zfp677	A830058L05Rik|Tce8	zinc finger protein 677	protein-coding	35.5	59.5	66.0	14.5	71.0	54.5
Merged-chr15-97489497-2	chr15	97488997	97489997	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	216325.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-103215311-1	chr9	103214811	103215811	+	616.0	f1_c57bl6.idr	intron (NM_133977, intron 13 of 16)	intron (NM_133977, intron 13 of 16)	-13246.0	NM_009275	20818.0	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	1.5	1.5	0.0	1.0	1.0	1.0
Merged-chr3-90082578-2	chr3	90082078	90083078	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357581, intron 1 of 8)	intron (NM_001357581, intron 1 of 8)	3057.0	NM_001293749	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	36.5	84.5	45.5	33.5	75.0	40.5
Merged-chr9-37089347-2	chr9	37088847	37089847	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 1 of 12)	intron (NM_001029838, intron 1 of 12)	57975.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-140985637-2	chr4	140985137	140986137	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1236.0	NM_029097	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64739493-2	chr9	64738993	64739993	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-1737.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-122938475-1	chr1	122937975	122938975	+	616.0	f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	733330.0	NR_151524	102638832.0	Mm.112794	NR_151524	ENSMUSG00000099960	Gm28590	-	predicted gene 28590	ncRNA	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129905020-1	chr2	129904520	129905520	+	616.0	f1_c57bl6.idr	Intergenic	Intergenic	-103561.0	NR_029452	654409.0	Mm.305555	NR_029452		Stk35os1	4932416H05Rik	serine/threonine kinase 35, opposite strand 1	ncRNA	1.0	0.5	9.0	4.5	6.5	13.0
Merged-chr8-70821175-2	chr8	70820674	70821674	+	616.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008353, exon 16 of 16)	3' UTR (NM_008353, exon 16 of 16)	12725.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	5.5	2.5	2.0	4.5	3.0	0.5
Merged-chr4-43537802-2	chr4	43537288	43538288	+	616.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011602, exon 43 of 57)	exon (NM_011602, exon 43 of 57)	-14234.0	NM_001277875	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	1.0	0.0	1.0	0.0	12.0	4.5
Merged-chr2-114704166-2	chr2	114703666	114704666	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-49202.0	NM_001356439	66632.0	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-16411766-1	chr5	16411266	16412266	+	616.0	f0_balb.idr	Intergenic	Intergenic	-141729.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-77268731-1	chr2	77268231	77269231	+	616.0	f0_balb.idr	intron (NM_175465, intron 1 of 17)	intron (NM_175465, intron 1 of 17)	11861.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128947495-2	chr4	128946995	128947995	+	616.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172875, exon 8 of 11)	exon (NM_172875, exon 8 of 11)	14960.0	NM_172875	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50175014-2	chr6	50174514	50175514	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361247, intron 6 of 12)	ID_B1|SINE|B4	64154.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	5.0	4.0	11.5	0.0	0.0	1.0
Merged-chr12-31952226-1	chr12	31951726	31952726	+	616.0	f1_balb.idr	Intergenic	Intergenic	-1981.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	29.0	83.5	40.0	13.0	54.0	29.0
Merged-chr11-108220687-2	chr11	108220187	108221187	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	123201.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164946339-2	chr2	164945839	164946839	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1880.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79850799-2	chr10	79850299	79851299	+	616.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029447)	TTS (NR_029447)	-3633.0	NM_001077363	19205.0	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20430806-1	chr11	20430306	20431306	+	616.0	f1_balb.idr	Intergenic	Intergenic	-98093.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	0.0	20.0	7.5	0.0	0.0	1.0
Merged-chr6-125661718-1	chr6	125661218	125662218	+	616.0	f0_c57.idr	intron (NM_011708, intron 38 of 51)	intron (NM_011708, intron 38 of 51)	-28701.0	NM_153589	243634.0	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64315315-2	chr5	64314814	64315814	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 12 of 18)	intron (NM_001289514, intron 12 of 18)	84957.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	1.0	11.0	6.0	2.0	9.5	5.0
Merged-chr1-119506435-2	chr1	119505935	119506935	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1653.0	NM_022327	64143.0	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74389521-2	chr1	74389021	74390021	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2088.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115467646-2	chr11	115467146	115468146	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359609, intron 2 of 2)	intron (NM_001359609, intron 2 of 2)	3846.0	NM_001359609	217316.0	Mm.25773	NM_001080934	ENSMUSG00000045775	Slc16a5	A130015N09Rik|MCT 5|MCT 6|MCT5	solute carrier family 16 (monocarboxylic acid transporters), member 5	protein-coding	2.0	0.0	0.0	1.5	0.0	0.0
Merged-chr18-32429507-2	chr18	32429007	32430007	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 13 of 17)	intron (NM_001360876, intron 13 of 17)	-51223.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0.0	1.5	0.0	0.0	4.5	0.0
Merged-chr11-32489183-2	chr11	32488683	32489683	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361561, intron 1 of 1)	intron (NM_001361561, intron 1 of 1)	33813.0	NM_173784	327900.0	Mm.260956	NM_173784	ENSMUSG00000044949	Ubtd2	4930571L24|9630054F20Rik|AI645720	ubiquitin domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79534371-2	chr11	79533871	79534871	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010897, intron 36 of 57)	MLTR11B|LTR|ERVK	-3762.0	NM_010161	14017.0	Mm.439665	NM_010161	ENSMUSG00000078771	Evi2a	AW491894|Evi-2|Evi2	ecotropic viral integration site 2a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128609433-2	chr4	128608931	128609931	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177758, intron 1 of 7)	intron (NM_177758, intron 1 of 7)	667.0	NM_177758	269585.0	Mm.153291	NM_177758	ENSMUSG00000061894	Zscan20	C130001F22|Zfp31|Zkscan20	zinc finger and SCAN domains 20	protein-coding	0.0	0.0	0.0	0.0	2.0	1.5
Merged-chr7-74554268-2	chr7	74553768	74554768	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038643, intron 1 of 10)	CpG	512.0	NM_023908	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-156189369-1	chr4	156188869	156189869	+	616.0	f1_balb.idr	intron (NM_021604, intron 2 of 35)	intron (NM_021604, intron 2 of 35)	8119.0	NM_021604	11603.0	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	5.0	2.0	0.0	5.0	0.0	1.0
Merged-chr7-99483033-2	chr7	99482533	99483533	+	616.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002172)	promoter-TSS (NR_002172)	-101.0	NR_002172	449630.0	Mm.454449	NR_002172	ENSMUSG00000065822	Snord15a	EG449630|Gm5774|RNU15A|Rnu15-a|U15A	small nucleolar RNA, C/D box 15A	snoRNA	25.0	41.0	32.0	16.0	64.5	44.5
Merged-chr3-59123636-2	chr3	59123136	59124136	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001287119, intron 1 of 2)	intron (NM_001287119, intron 1 of 2)	7126.0	NM_001287124	140795.0	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134926355-2	chr4	134925855	134926855	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023665, intron 3 of 4)	intron (NM_023665, intron 3 of 4)	2730.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4236396-2	chr7	4235896	4236896	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1358.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	4.5	21.0	7.0	7.5	5.0	12.5
Merged-chr12-17700917-1	chr12	17700417	17701417	+	616.0	f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	10108.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	9.0	6.5	12.0	14.0	8.5	4.0
Merged-chr10-128628033-2	chr10	128627533	128628533	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-1527.0	NM_013765	27370.0	Mm.32118	NM_013765	ENSMUSG00000025362	Rps26	-	ribosomal protein S26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18500161-2	chr16	18499661	18500661	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081682, intron 2 of 7)	intron (NM_001081682, intron 2 of 7)	1290.0	NR_104347	13972.0	Mm.236139	NM_023120	ENSMUSG00000000884	Gnb1l	ESTM55|Gm16314|Me49f07|Wdr14|Wdvcf	guanine nucleotide binding protein (G protein), beta polypeptide 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-44279813-2	chr12	44279313	44280313	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026164, intron 1 of 9)	intron (NM_026164, intron 1 of 9)	10659.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	0.0	10.0	0.5	0.0	5.5	0.0
Merged-chr3-3588042-2	chr3	3587542	3588542	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013920, intron 1 of 9)	RLTR16B_MM|LTR|ERVK	80012.0	NM_013920	30942.0	Mm.330897	NM_013920	ENSMUSG00000017688	Hnf4g	NR2A2	hepatocyte nuclear factor 4, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108050883-2	chr9	108050383	108051383	+	616.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_032543)	TTS (NM_032543)	1619.0	NM_001357682	331026.0	Mm.22554	NM_177910	ENSMUSG00000070284	Gmppb	AI317178|E430010H19	GDP-mannose pyrophosphorylase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66131111-1	chr9	66130611	66131611	+	616.0	f0_balb.idr	intron (NM_001359210, intron 1 of 3)	intron (NM_001359210, intron 1 of 3)	4500.0	NM_026635	68250.0	Mm.27107	NM_026635	ENSMUSG00000032381	Fam96a	5730536A07Rik	family with sequence similarity 96, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16262386-2	chr7	16261886	16262886	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-2846.0	NM_007577	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	19.0	35.5	4.5	6.0	25.0	25.5
Merged-chr6-42348277-2	chr6	42347777	42348777	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1551.0	NM_001289619	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-101734803-2	chr2	101734321	101735321	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 6 of 8)	intron (NM_001355625, intron 6 of 8)	56401.0	NM_001303273	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	8.5	25.0	5.0	4.0	5.5	13.5
Merged-chr4-107104771-2	chr4	107104271	107105271	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172873, intron 2 of 3)	intron (NM_172873, intron 2 of 3)	7880.0	NM_172873	242603.0	Mm.257231	NM_172873	ENSMUSG00000047636	Cdcp2	D030010E02Rik	CUB domain containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101877269-2	chr5	101876769	101877769	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 44 of 66)	intron (NM_172882, intron 44 of 66)	112139.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-26165090-1	chr11	26164590	26165590	+	616.0	f0_c57.idr	intron (NR_027973, intron 1 of 5)	intron (NR_027973, intron 1 of 5)	-37150.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-64453983-1	chr14	64453483	64454483	+	616.0	f1_c57bl6.idr	intron (NM_026322, intron 2 of 10)	intron (NM_026322, intron 2 of 10)	1920.0	NM_026322	110265.0	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164938568-2	chr2	164938068	164939068	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9651.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-56927144-2	chr9	56926644	56927644	+	616.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175483, exon 1 of 2)	5' UTR (NM_175483, exon 1 of 2)	1227.0	NM_175483	235406.0	Mm.191459	NM_175483	ENSMUSG00000032733	Snx33	E130307J07Rik|Sh3px3	sorting nexin 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-178144925-1	chr1	178144425	178145425	+	616.0	f0_balb.idr	intron (NR_155538, intron 17 of 21)	intron (NR_155538, intron 17 of 21)	-42492.0	NM_024282	78825.0	Mm.440132	NM_024282	ENSMUSG00000026502	Desi2	5830417C01Rik|DeSI-2|Fam152a|Pppde1	desumoylating isopeptidase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-40744882-2	chr11	40744382	40745382	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	10404.0	NM_009831	12450.0	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-14599442-2	chr5	14598942	14599942	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110796, intron 3 of 19)	intron (NM_001110796, intron 3 of 19)	84524.0	NM_001110796	26875.0	Mm.146275	NM_011995	ENSMUSG00000061601	Pclo	Acz|Pico	piccolo (presynaptic cytomatrix protein)	protein-coding	0.0	2.5	1.0	0.0	2.5	1.0
Merged-chr7-16231578-1	chr7	16231078	16232078	+	616.0	f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-9546.0	NM_027883	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	16.0	8.5	3.5	6.5	2.5	2.0
Merged-chr13-34693285-1	chr13	34692785	34693785	+	616.0	f0_balb.idr	Intergenic	MER117|DNA|hAT-Charlie	40362.0	NR_105041	101056149.0	Mm.421309	NR_105041	ENSMUSG00000086786	Gm15908	-	predicted gene 15908	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-87389399-2	chr12	87388899	87389899	+	615.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1044.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46449935-5	chr11	46449485	46450485	+	615.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4946.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-57197537-3	chr19	57197039	57198039	+	615.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290816)	promoter-TSS (NM_001290816)	92.0	NM_001103177	226251.0	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94317734-3	chr11	94317261	94318261	+	615.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361574, intron 1 of 9)	B3|SINE|B2	4202.0	NR_155069	67684.0	Mm.30927	NM_026313	ENSMUSG00000020863	Luc7l3	3300001P08Rik|Luc7a	LUC7-like 3 (S. cerevisiae)	protein-coding	29.5	83.5	67.5	23.0	93.0	63.5
Merged-chr10-69250565-3	chr10	69250066	69251066	+	615.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252637, intron 4 of 10)	intron (NM_001252637, intron 4 of 10)	37372.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-87855432-2	chr10	87854932	87855932	+	615.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2833.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73342354-2	chr12	73341860	73342860	+	615.75	f0_balb.idr|f1_c57bl6.idr	intron (NM_001037717, intron 10 of 15)	intron (NM_001037717, intron 10 of 15)	55512.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	0.5	7.0	12.0	1.5	0.0	5.0
Merged-chr5-71545618-2	chr5	71545118	71546118	+	615.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_030052, intron 1 of 2)	(GAAA)n|Simple_repeat|Simple_repeat	2587.0	NM_030052	78174.0	Mm.60690	NM_030052	ENSMUSG00000049387	Cox7b2	4930503B16Rik	cytochrome c oxidase subunit VIIb2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128796210-2	chr2	128795710	128796710	+	615.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 18 of 18)	intron (NM_008587, intron 18 of 18)	-22093.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	18.5	16.0	10.0	3.0	24.0	12.5
Merged-chr3-142295428-3	chr3	142294936	142295936	+	615.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190852, intron 7 of 15)	intron (NM_001190852, intron 7 of 15)	96414.0	NM_022554	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	1.5	15.0	20.0	3.5	6.0	1.5
Merged-chr14-70290087-2	chr14	70289587	70290587	+	615.700012	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008915)	promoter-TSS (NM_008915)	-590.0	NM_001304992	19057.0	Mm.439683	NM_008915	ENSMUSG00000022092	Ppp3cc	Calnc|PP2BA gamma	protein phosphatase 3, catalytic subunit, gamma isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-37331358-3	chr3	37330875	37331875	+	615.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17278.0	NM_008006	14173.0	Mm.473689	NM_008006	ENSMUSG00000037225	Fgf2	Fgf-2|Fgfb|bFGF	fibroblast growth factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33493218-2	chr17	33492718	33493718	+	615.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30867.0	NR_137628	224697.0	Mm.29304	NM_172619	ENSMUSG00000024299	Adamts10	9430006O18|AW045948|Adam-ts10|Adamts-10|Znmp	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10	protein-coding	6.0	0.0	2.0	4.5	2.0	1.5
Merged-chr12-86146421-3	chr12	86145925	86146925	+	615.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029601, intron 4 of 7)	L1MA6|LINE|L1	-22916.0	NR_046081	328136.0	Mm.312050	NR_046081	ENSMUSG00000097543	Gm805	-	predicted gene 805	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27605867-3	chr3	27605365	27606365	+	615.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 4 of 26)	intron (NM_001356953, intron 4 of 26)	-20870.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34539309-2	chr5	34538809	34539809	+	615.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	-4056.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55100063-2	chr19	55099563	55100563	+	615.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008149)	promoter-TSS (NM_008149)	-586.0	NM_008149	14732.0	Mm.210196	NM_008149	ENSMUSG00000024978	Gpam	GPAT|GPAT-1|GPAT1|P90	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-117772834-2	chr12	117772298	117773298	+	615.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71063.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	2.5	8.5	1.0	7.5	0.0	3.0
Merged-chr2-35493248-2	chr2	35492748	35493748	+	615.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31799.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55234715-2	chr19	55234215	55235215	+	615.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 3 of 20)	intron (NM_001081076, intron 3 of 20)	6521.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-121244607-5	chr6	121244094	121245094	+	615.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1312.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	2.0	9.0	3.5	5.0	2.0	5.0
Merged-chr11-5152076-2	chr11	5151580	5152580	+	615.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_080595, intron 1 of 14)	CpG	142.0	NM_080595	140703.0	Mm.840	NM_080595	ENSMUSG00000034164	Emid1	AW122071|CO-5|Emu1	EMI domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr4-155137355-2	chr4	155136855	155137855	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081100, intron 12 of 13)	intron (NM_001081100, intron 12 of 13)	50751.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53342064-2	chr18	53341564	53342564	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 3 of 6)	intron (NM_029394, intron 3 of 6)	75943.0	NM_008908	19038.0	Mm.4587	NM_008908	ENSMUSG00000024538	Ppic	CyP-20c	peptidylprolyl isomerase C	protein-coding	1.5	4.0	4.0	1.5	13.0	4.5
Merged-chr5-41575964-2	chr5	41575464	41576464	+	615.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131727.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34207199-2	chr19	34206699	34207699	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	-10309.0	NM_001360719	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	0.0	7.5	2.5	0.0	7.5	2.5
Merged-chr10-93494262-1	chr10	93493762	93494762	+	615.5	f0_balb.idr	intron (NM_010401, intron 8 of 19)	CT-rich|Low_complexity|Low_complexity	5494.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	0.0	5.0	3.0	1.5	25.5	11.0
Merged-chr12-87471529-2	chr12	87471029	87472029	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025507, intron 1 of 13)	intron (NM_025507, intron 1 of 13)	770.0	NM_025507	66354.0	Mm.271174	NM_025507	ENSMUSG00000021039	Snw1	2310008B08Rik|AW048543|NCoA-62|SKIP|Skiip	SNW domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-32730949-2	chr15	32730449	32731449	+	615.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42203.0	NR_155440	105245909.0	Mm.229263	NR_155440	ENSMUSG00000115749	Gm41289	-	predicted gene, 41289	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27167952-4	chr7	27167534	27168534	+	615.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029391)	TTS (NM_029391)	-1232.0	NM_053208	112406.0	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43355446-2	chr7	43354946	43355946	+	615.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001271019, exon 7 of 9)	exon (NM_001271019, exon 7 of 9)	4105.0	NM_145581	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167407465-2	chr2	167406965	167407965	+	615.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	-14245.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-110720139-2	chr8	110719639	110720639	+	615.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151674, exon 19 of 19)	non-coding (NR_151674, exon 19 of 19)	-1337.0	NM_198625	244654.0	Mm.490385	NM_198625	ENSMUSG00000033763	Mtss1l	ABBA	metastasis suppressor 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6605753-2	chr11	6605253	6606253	+	615.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081652, exon 1 of 8)	5' UTR (NM_001081652, exon 1 of 8)	301.0	NM_001081652	192950.0	Mm.337771	NM_001081652	ENSMUSG00000041073	Nacad	D230024G13Rik|mKIAA0363	NAC alpha domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83147536-2	chr15	83147036	83148036	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 1 of 7)	MLTR12|LTR|ERV1	1842.0	NM_178627	73826.0	Mm.23758	NM_178627	ENSMUSG00000041815	Poldip3	1110008P04Rik|AA408269|AL022852|C77954|PDIP46|SKAR|mKIAA1649	polymerase (DNA-directed), delta interacting protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56327492-2	chr17	56326992	56327992	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172132, intron 1 of 22)	intron (NM_172132, intron 1 of 22)	1442.0	NM_001357909	193796.0	Mm.45047	NM_172132	ENSMUSG00000024201	Kdm4b	4732474L06Rik|Jmjd2b	lysine (K)-specific demethylase 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90521302-2	chr2	90520802	90521802	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-42128.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-118473661-2	chr1	118473161	118474161	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359330, intron 8 of 39)	intron (NM_001359330, intron 8 of 39)	-14396.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20649347-2	chr9	20648847	20649847	+	615.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2783.0	NM_023371	23988.0	Mm.7906	NM_023371	ENSMUSG00000032171	Pin1	0610025L01Rik|D9Bwg1161e	protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25516717-2	chr14	25516217	25517217	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 2 of 23)	intron (NM_183208, intron 2 of 23)	-17722.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126762725-2	chr7	126762225	126763225	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011952, intron 2 of 8)	MIR|SINE|MIR	3099.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52200160-2	chr3	52199660	52200660	+	615.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68177.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32198879-2	chr19	32198379	32199379	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	B2_Mm1a|SINE|B2	12134.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82542341-2	chr11	82541841	82542841	+	615.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-91012.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128767682-2	chr2	128767180	128768180	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 8 of 18)	B1F1|SINE|Alu	-50623.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	4.0	18.0	41.0	14.5	11.5	8.0
Merged-chr19-42145532-2	chr19	42145032	42146032	+	615.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1857.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	2.0	5.5	4.5	1.0	1.0	8.5
Merged-chr3-95644385-2	chr3	95643885	95644885	+	615.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-14336.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.5	2.0	3.0	0.5	0.0	3.5
Merged-chr4-43420983-2	chr4	43420483	43421483	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037709, intron 2 of 11)	intron (NM_001037709, intron 2 of 11)	8151.0	NM_177377	329831.0	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55678673-2	chr14	55678173	55679173	+	615.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177992)	TTS (NM_177992)	3144.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-10698393-2	chr14	10697893	10698893	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 4 of 9)	intron (NM_001360141, intron 4 of 9)	-40160.0	NR_131139	547334.0	Mm.434606	NR_131139	ENSMUSG00000089833	Fhitos	Gm16542	fragile histidine triad gene, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92448897-2	chr5	92448397	92449397	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 9 of 11)	intron (NM_007644, intron 9 of 11)	-9660.0	NR_105843	102466159.0		NR_105843	ENSMUSG00000099160	Mir6415	Gm27714|mmu-mir-6415	microRNA 6415	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-19843974-2	chr16	19843474	19844474	+	615.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40300.0	NR_027896	68162.0	Mm.35159	NR_015488		A930003A15Rik	AI853191	RIKEN cDNA A930003A15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-5133353-2	chr15	5132853	5133853	+	615.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-10508.0	NM_001013367	105787.0	Mm.207004	NM_001013367	ENSMUSG00000050697	Prkaa1	AI194361|AI450832|AL024255|AMPKalpha1|C130083N04Rik	protein kinase, AMP-activated, alpha 1 catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-44422175-2	chr15	44421675	44422675	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113554, intron 1 of 9)	B3|SINE|B2	-5936.0	NM_175009	223527.0	Mm.291828	NM_175009	ENSMUSG00000022338	Eny2	1810057B09Rik|6720481I12|DC6|Ey2	ENY2 transcription and export complex 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107231400-2	chr9	107230900	107231900	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153413, intron 1 of 52)	CpG	509.0	NM_153413	208869.0	Mm.150259	NM_153413	ENSMUSG00000039716	Dock3	MOCA|PBP|mKIAA0299	dedicator of cyto-kinesis 3	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr10-8112086-2	chr10	8111586	8112586	+	615.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-155963.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	21.0	5.5	4.5	5.0	14.0	4.0
Merged-chr2-152691633-2	chr2	152691133	152692133	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010376, intron 7 of 11)	intron (NM_010376, intron 7 of 11)	4485.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	17.5	21.0	31.5	2.0	2.5	22.5
Merged-chr17-65842214-2	chr17	65841714	65842714	+	615.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_104465)	TTS (NR_104465)	42709.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	0.5	0.0	0.5	3.0	2.0	0.5
Merged-chr6-113690051-2	chr6	113689551	113690551	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 10 of 11)	intron (NM_001113553, intron 10 of 11)	-6999.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-42953074-2	chr1	42952574	42953574	+	615.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_053107, exon 1 of 2)	5' UTR (NM_053107, exon 1 of 2)	202.0	NM_053107	93690.0	Mm.444976	NM_053107	ENSMUSG00000041907	Gpr45	9230112G11Rik|AW046772	G protein-coupled receptor 45	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91414567-2	chr16	91414067	91415067	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008349, intron 3 of 6)	intron (NM_008349, intron 3 of 6)	8332.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-150993342-2	chr1	150992842	150993842	+	615.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024720)	promoter-TSS (NM_001024720)	93.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112330415-2	chr12	112329915	112330915	+	615.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92783.0	NR_036459	100504733.0	Mm.255309	NM_176956	ENSMUSG00000047828	A730018C14Rik	-	RIKEN cDNA A730018C14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145742451-2	chr2	145741951	145742951	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 3 of 3)	intron (NR_033220, intron 3 of 3)	41256.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158122688-2	chr2	158122189	158123189	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 10 of 12)	intron (NM_009373, intron 10 of 12)	23703.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.5	1.5
Merged-chr5-112267088-2	chr5	112266588	112267588	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312893, intron 4 of 5)	intron (NM_001312893, intron 4 of 5)	-9603.0	NM_001326590	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120954503-2	chr10	120953990	120954990	+	615.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001081193, intron 1 of 12)	intron (NM_001081193, intron 1 of 12)	24840.0	NM_001081193	380664.0	Mm.339371	NM_001081193	ENSMUSG00000048661	Lemd3	AI316861|Man1	LEM domain containing 3	protein-coding	2.0	6.0	3.0	2.0	6.0	3.0
Merged-chr2-38999823-2	chr2	38999323	39000323	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029687, intron 2 of 8)	intron (NM_029687, intron 2 of 8)	1514.0	NM_029687	76646.0	Mm.358777	NM_029687	ENSMUSG00000035295	Wdr38	1700123D08Rik	WD repeat domain 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-45499840-2	chr5	45499340	45500340	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024434, intron 5 of 12)	intron (NM_024434, intron 5 of 12)	6466.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31404796-2	chr6	31404296	31405296	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013791, intron 1 of 17)	intron (NM_013791, intron 1 of 17)	5968.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73476918-2	chr2	73476418	73477418	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	B1_Mus1|SINE|Alu	8835.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-179232632-2	chr1	179232132	179233132	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027188, intron 5 of 11)	intron (NM_027188, intron 5 of 11)	285409.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12881169-2	chr13	12880669	12881669	+	615.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81090.0	NM_011118	18812.0	Mm.457984	NM_011118	ENSMUSG00000056457	Prl2c3	Ghd1|MRP-2|MRP-3|Mrpplf3|PLF-2|PLF-3|Plf2|Prl2c4|mrp/plf3	prolactin family 2, subfamily c, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-77769842-2	chr16	77769342	77770342	+	615.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	123569.0	NR_029540	723952.0		NR_029540	ENSMUSG00000065472	Mir125b-2	Mirn125b-2|mir-125b-2	microRNA 125b-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51842581-2	chr13	51842081	51843081	+	615.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4094.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118226706-2	chr11	118226206	118227206	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-13964.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101628602-2	chr7	101628098	101629098	+	615.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-35170.0	NM_009191	20480.0	Mm.3990	NM_009191	ENSMUSG00000001829	Clpb	AL118244|Skd3	ClpB caseinolytic peptidase B	protein-coding	1.5	1.5	1.0	2.5	14.0	2.0
Merged-chr18-36738979-2	chr18	36738479	36739479	+	615.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_028036, exon 8 of 12)	exon (NM_028036, exon 8 of 12)	3909.0	NM_028036	71983.0	Mm.135188	NM_028036	ENSMUSG00000006850	Tmco6	2410015B03Rik	transmembrane and coiled-coil domains 6	protein-coding	1.0	7.0	1.5	0.0	2.0	0.0
Merged-chr11-97127771-2	chr11	97127271	97128271	+	615.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12440.0	NM_019507	57765.0	Mm.94519	NM_019507	ENSMUSG00000001444	Tbx21	TBT1|Tbet|Tblym	T-box 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45577930-2	chr17	45577430	45578430	+	615.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-4669.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-23762451-2	chr1	23761951	23762951	+	615.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172124, exon 1 of 4)	5' UTR (NM_172124, exon 1 of 4)	525.0	NM_172124	280645.0	Mm.471661	NM_172124	ENSMUSG00000026156	B3gat2	GlcAT-S|Glcats	beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113620234-2	chr6	113619734	113620734	+	615.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-3787.0	NM_009507	22346.0	Mm.29407	NM_009507	ENSMUSG00000033933	Vhl	Vhlh	von Hippel-Lindau tumor suppressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97837848-2	chr15	97837348	97838348	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	-6081.0	NM_001204276	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17646282-4	chr6	17645846	17646846	+	615.479187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007604, intron 1 of 9)	intron (NM_007604, intron 1 of 9)	9336.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0.0	4.5	18.0	0.5	7.0	6.0
Merged-chr4-137739335-3	chr4	137738824	137739824	+	615.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	14863.0	NR_138592	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	2.0	1.0	3.5	9.0	5.5	0.0
Merged-chr17-14918570-2	chr17	14918070	14919070	+	615.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_175173, intron 10 of 24)	intron (NM_175173, intron 10 of 24)	24554.0	NM_175173	71682.0	Mm.122698	NM_175173	ENSMUSG00000046991	Wdr27	0610012K18Rik	WD repeat domain 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123101855-2	chr8	123101309	123102309	+	615.400024	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016738)	promoter-TSS (NM_016738)	-541.0	NM_016738	270106.0	Mm.319719	NM_016738	ENSMUSG00000000740	Rpl13	A52|L13	ribosomal protein L13	protein-coding	7.5	25.0	21.5	6.5	28.0	20.0
Merged-chr18-82868806-2	chr18	82868306	82869306	+	615.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12909.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67756353-3	chr5	67755863	67756863	+	615.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009727, intron 14 of 35)	intron (NM_009727, intron 14 of 35)	91068.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	2.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36447101-1	chr1	36446601	36447601	+	615.333313	f0_balb.idr	Intergenic	Intergenic	-1830.0	NM_001310517	214895.0	Mm.287854	NM_001013374	ENSMUSG00000001143	Lman2l	A630028F14Rik|VIP36-like|VIPL	lectin, mannose-binding 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93288235-2	chr16	93287735	93288735	+	615.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64954.0	NR_040486	69857.0	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-40580491-1	chr6	40579991	40580991	+	615.333313	f0_balb.idr	intron (NM_001038604, intron 5 of 6)	B4A|SINE|B4	5314.0	NM_021364	23845.0	Mm.103765	NM_021364	ENSMUSG00000029915	Clec5a	Clecsf5|Ly100|MDL-1|Mdl1	C-type lectin domain family 5, member a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3811819-2	chr12	3811319	3812319	+	615.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	4659.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-106225523-2	chr4	106224976	106225976	+	615.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15737.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	1.0	0.0	0.5	7.0	2.5	0.0
Merged-chr19-10841010-2	chr19	10840510	10841510	+	615.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1534.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-96932387-2	chr1	96931887	96932887	+	615.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_120500, intron 9 of 14)	L1_Mus4|LINE|L1	-60216.0	NM_172658	227394.0	Mm.11662	NM_172658	ENSMUSG00000040693	Slco4c1	9530051F04|C330017E21Rik|OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20|oatp-R	solute carrier organic anion transporter family, member 4C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-37704764-2	chr2	37704264	37705264	+	615.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16480.0	NR_039590	100628597.0		NR_039590	ENSMUSG00000092958	Mir5128	mir-5128|mmu-mir-5128|mu-mir-5128	microRNA 5128	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-17181583-2	chr19	17181083	17182083	+	615.224976	f1_balb.idr|f1_c57bl6.idr	intron (NM_181348, intron 11 of 19)	ORR1B2|LTR|ERVL-MaLR	157922.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	11.0	2.5	9.5	1.5	6.0	19.5
Merged-chr1-87180485-3	chr1	87179993	87180993	+	615.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2821.0	NM_027084	69453.0	Mm.84618	NM_027084	ENSMUSG00000036480	Prss56	1700027L20Rik	protease, serine 56	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146146309-2	chr3	146145809	146146809	+	615.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3524.0	NM_026656	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-46371930-2	chr2	46371428	46372428	+	615.166626	f0_balb.idr|f0_c57.idr	Intergenic	L1M3c|LINE|L1	675323.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-103228633-4	chr9	103228239	103229239	+	615.125	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133977, intron 1 of 16)	intron (NM_133977, intron 1 of 16)	1547.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	27.5	20.5	18.0	10.5	16.5	16.0
Merged-chr9-107526417-1	chr9	107525917	107526917	+	615.0	f1_c57bl6.idr	intron (NM_001174048, intron 33 of 37)	intron (NM_001174048, intron 33 of 37)	-7528.0	NM_019704	56395.0	Mm.260153	NM_019704	ENSMUSG00000010045	Tmem115	C78915|Pl6|Pp6	transmembrane protein 115	protein-coding	1.0	1.0	0.0	0.5	0.0	2.5
Merged-chr9-121592173-1	chr9	121591673	121592673	+	615.0	f1_balb.idr	intron (NR_040740, intron 1 of 3)	intron (NR_040740, intron 1 of 3)	5153.0	NR_040740	75384.0	Mm.445955	NR_040740	ENSMUSG00000084995	Lyzl4os	4930589B17Rik|4930596M17Rik	lysozyme-like 4, opposite strand	ncRNA	24.5	3.5	2.5	4.5	14.0	4.5
Merged-chr2-153082193-2	chr2	153081727	153082727	+	615.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145536)	TTS (NM_145536)	16272.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	0.0	3.5	6.5	0.0	0.5	5.0
Merged-chr10-8844011-3	chr10	8843509	8844509	+	615.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	42061.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.0	9.5	9.0	2.5	8.5	9.5
Merged-chr2-32215342-2	chr2	32214842	32215842	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159634, intron 16 of 31)	intron (NM_001159634, intron 16 of 31)	-21341.0	NM_145145	99011.0	Mm.31192	NM_145145	ENSMUSG00000039254	Pomt1	AI505244	protein-O-mannosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-41614892-2	chr3	41614392	41615392	+	615.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172303, exon 11 of 11)	3' UTR (NM_172303, exon 11 of 11)	50012.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-59178809-2	chr6	59178309	59179309	+	615.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-30061.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107738041-2	chr4	107737504	107738504	+	615.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-53842.0	NM_019872	56296.0	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr18-77063576-1	chr18	77063076	77064076	+	615.0	f0_balb.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-1632.0	NM_008602	17344.0	Mm.6370	NM_008602	ENSMUSG00000025423	Pias2	6330408K17Rik|AI462206|ARIP3|AU018068|Dib|Miz1|PIASxalpha|PIASxb|PIASxbeta|SIZ2	protein inhibitor of activated STAT 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116854369-1	chr11	116853869	116854869	+	615.0	f1_c57bl6.idr	intron (NM_178620, intron 1 of 12)	intron (NM_178620, intron 1 of 12)	369.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	47.0	46.0	72.5	33.0	32.5	40.0
Merged-chr11-116088656-2	chr11	116088082	116089082	+	615.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1587.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171613617-1	chr1	171613117	171614117	+	615.0	f0_balb.idr	Intergenic	Intergenic	-6207.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	12.0	0.0	3.5	5.0	10.5	19.0
Merged-chr4-155221291-2	chr4	155220791	155221791	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	1244.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	3.5	15.5	21.0	3.5	15.5	21.0
Merged-chr14-66290439-2	chr14	66289939	66290939	+	615.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-6586.0	NM_029979	66854.0	Mm.43871	NM_029979	ENSMUSG00000022043	Trim35	0710005M05Rik|A430106H13Rik|AW046487|HLS5|Mair|NC8|mKIAA1098	tripartite motif-containing 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-130093015-1	chr10	130092515	130093515	+	615.0	f0_balb.idr	Intergenic	Intergenic	18603.0	NM_146671	258666.0	Mm.377628	NM_146671	ENSMUSG00000058251	Olfr822	MOR113-2	olfactory receptor 822	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32737006-1	chr5	32736506	32737506	+	615.0	f1_balb.idr	3' UTR (NM_177298, exon 8 of 8)	3' UTR (NM_177298, exon 8 of 8)	9336.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	3.0	0.0	0.0	0.0	0.0	1.0
Merged-chr13-12932142-2	chr13	12931642	12932642	+	615.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR46A|LTR|ERVK	73188.0	NM_031191	18811.0	Mm.88796	NM_031191	ENSMUSG00000079092	Prl2c2	Ghd2|MRP-1|PLF-1|Plf|Plf1	prolactin family 2, subfamily c, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83652231-2	chr11	83651731	83652731	+	615.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-2853.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-69014252-2	chr2	69013752	69014752	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 4 of 10)	intron (NM_001347161, intron 4 of 10)	-121548.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44378018-2	chr9	44377518	44378518	+	615.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1472.0	NM_021395	12282.0	Mm.116721	NM_021395	ENSMUSG00000032115	Hyou1	AI415631|CBP-140|Cab140|Grp170|Orp150	hypoxia up-regulated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120028503-2	chr2	120028003	120029003	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_104353, intron 1 of 26)	URR1A|DNA|hAT-Charlie	1020.0	NM_001114637	433466.0	Mm.482417	NM_001114637	ENSMUSG00000098789	Jmjd7	-	jumonji domain containing 7	protein-coding	9.5	41.0	21.0	1.5	1.5	7.0
Merged-chr11-97152672-2	chr11	97152172	97153172	+	615.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2960.0	NM_198100	73174.0	Mm.27882	NM_198100	ENSMUSG00000038517	Tbkbp1	3110043L15Rik|ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135623599-2	chr5	135623079	135624079	+	615.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-9075.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36696068-2	chr18	36695568	36696568	+	615.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172831)	promoter-TSS (NM_172831)	-143.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-38197601-2	chr5	38197101	38198101	+	615.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22853.0	NM_029162	75079.0	Mm.258741	NM_029162	ENSMUSG00000029127	Zbtb49	4930518A03Rik|Zfp509|Znf509	zinc finger and BTB domain containing 49	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29210782-2	chr6	29210282	29211282	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302934, intron 2 of 14)	intron (NM_001302934, intron 2 of 14)	1515.0	NM_011829	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-109747075-2	chr13	109746575	109747575	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 4 of 16)	ORR1A4|LTR|ERVL-MaLR	-156734.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.5	1.0	4.0	0.5	0.0	1.0
Merged-chr17-64724735-2	chr17	64724235	64725235	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 16 of 21)	Lx8|LINE|L1	-42376.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119659656-2	chr4	119659156	119660156	+	615.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008191)	promoter-TSS (NM_008191)	-711.0	NM_008191	14916.0	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-15506095-2	chr11	15505595	15506595	+	615.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-751629.0	NM_001290539	211739.0	Mm.284015	NM_145967	ENSMUSG00000048834	Vstm2a	Vstm2	V-set and transmembrane domain containing 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62312839-2	chr4	62312339	62313339	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355385, intron 20 of 27)	intron (NM_001355385, intron 20 of 27)	21292.0	NM_001290518	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112217951-2	chr12	112217451	112218451	+	615.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71743.0	NM_001097621	668303.0	Mm.313104	NM_001097621	ENSMUSG00000021294	Kif26a	mKIAA1236	kinesin family member 26A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-37720501-3	chr18	37719989	37720989	+	615.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033576)	promoter-TSS (NM_033576)	-65.0	NM_033576	93701.0	Mm.247203	NM_033576	ENSMUSG00000103585	Pcdhgb4	-	protocadherin gamma subfamily B, 4	protein-coding	0.0	0.5	2.0	0.0	0.5	2.5
Merged-chr17-69232143-2	chr17	69231643	69232643	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	45063.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr8-41243288-1	chr8	41242788	41243788	+	615.0	f0_c57.idr	intron (NM_023662, intron 1 of 37)	intron (NM_023662, intron 1 of 37)	3529.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	9.5	13.0	3.5	12.5	7.0	0.5
Merged-chr10-20000525-2	chr10	20000025	20001025	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	65999.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118907592-2	chr9	118907092	118908092	+	615.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26C_MM|LTR|ERVK	-18944.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr10-127320965-2	chr10	127320465	127321465	+	615.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285785)	promoter-TSS (NM_001285785)	-999.0	NM_001285785	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	1.0	10.0	13.0	1.0	7.5	12.5
Merged-chr5-108673368-2	chr5	108672868	108673868	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310691, intron 2 of 2)	intron (NM_001310691, intron 2 of 2)	1428.0	NM_001310692	231583.0	Mm.440571	NM_174870	ENSMUSG00000046959	Slc26a1	Sat1	solute carrier family 26 (sulfate transporter), member 1	protein-coding	2.5	0.0	0.0	0.5	1.5	0.0
Merged-chr6-139882237-3	chr6	139881731	139882731	+	615.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207683, intron 25 of 31)	intron (NM_207683, intron 25 of 31)	40786.0	NM_011084	18705.0	Mm.333471	NM_011084	ENSMUSG00000030228	Pik3c2g	C80387|PI3K-C2-gamma	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma	protein-coding	20.0	1.5	6.0	0.5	0.0	14.5
Merged-chr6-24109336-1	chr6	24108836	24109836	+	615.0	f0_balb.idr	intron (NM_019481, intron 7 of 14)	intron (NM_019481, intron 7 of 14)	58756.0	NM_019481	55961.0	Mm.19299	NM_019481	ENSMUSG00000029700	Slc13a1	AI314066|AI987826|NaSi-1|Nas1	solute carrier family 13 (sodium/sulfate symporters), member 1	protein-coding	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr11-97623395-1	chr11	97622895	97623895	+	615.0	f1_c57bl6.idr	TTS (NR_045496)	TTS (NR_045496)	6321.0	NM_175332	103551.0	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	3.5	3.5	0.5	0.0	0.0	2.0
Merged-chr3-116659165-2	chr3	116658665	116659665	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008246, intron 1 of 11)	intron (NM_008246, intron 1 of 11)	3512.0	NM_008246	15247.0	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	7.0	15.0	9.0	7.0	4.5	8.0
Merged-chr3-48740649-2	chr3	48740149	48741149	+	615.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-131549.0	NR_003617	66332.0	Mm.46124	NM_025493		1700018B24Rik	-	enhancer of rudimentary homolog pseudogene	pseudo	0.0	1.5	0.0	0.0	1.0	1.5
Merged-chr2-126708625-2	chr2	126708125	126709125	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019729, intron 1 of 18)	intron (NM_019729, intron 1 of 18)	1297.0	NM_019729	84092.0	Mm.272629	NM_019729	ENSMUSG00000027363	Usp8	AI574262|AW557536|Ubpy|mKIAA0055	ubiquitin specific peptidase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10572741-3	chr17	10572205	10573205	+	615.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 4 of 4)	intron (NM_027032, intron 4 of 4)	116489.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99915783-2	chr7	99915283	99916283	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164258, intron 15 of 18)	intron (NM_001164258, intron 15 of 18)	56565.0	NM_001164258	446101.0	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	3.0
Merged-chr18-35854577-2	chr18	35854077	35855077	+	615.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357459)	promoter-TSS (NM_001357459)	-110.0	NM_001357459	67393.0	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90892494-1	chr5	90891994	90892994	+	615.0	f1_c57bl6.idr	intron (NM_008176, intron 3 of 3)	intron (NM_008176, intron 3 of 3)	1249.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0.0	0.0	3.0	0.0	3.5	1.5
Merged-chr4-133412041-2	chr4	133411541	133412541	+	615.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_016981, exon 2 of 12)	exon (NM_016981, exon 2 of 12)	42265.0	NR_039582	100628620.0		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	8.0	4.0	6.5	22.5	13.5	40.5
Merged-chr11-109481239-2	chr11	109480739	109481739	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028710, intron 1 of 13)	intron (NM_028710, intron 1 of 13)	-4653.0	NM_001361975	74008.0	Mm.482224	NM_028710	ENSMUSG00000020604	Arsg	6330406P08Rik|AI846872|ASG	arylsulfatase G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117354899-2	chr8	117354399	117355399	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	5729.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35374290-1	chr8	35373790	35374790	+	615.0	f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-1451.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	4.5	4.5	1.5	1.5	4.0	0.0
Merged-chr16-55480445-1	chr16	55479945	55480945	+	615.0	f0_balb.idr	Intergenic	Intergenic	-14286.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17767435-1	chr10	17766935	17767935	+	615.0	f1_c57bl6.idr	Intergenic	Intergenic	-28784.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	6.0	0.0	3.5	11.5	33.0	23.0
Merged-chr4-96245433-2	chr4	96244933	96245933	+	615.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103247.0	NM_001004141	100066.0	Mm.26915	NM_001004141	ENSMUSG00000066097	Cyp2j11	AI314783|Cyp2j11-ps	cytochrome P450, family 2, subfamily j, polypeptide 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4_GL456216_random-34502-1	chr4_GL456216_random	34002	35002	+	615.0	f0_c57.idr	intron (NM_001033326, intron 5 of 6)	CpG-10796	18621.0	NM_001033326	236082.0	Mm.305345	NM_001033326	ENSMUSG00000063897	Dhrsx	C80877|D4Ertd296e|Dhrsxy|Pscad	dehydrogenase/reductase (SDR family) X chromosome	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65593702-2	chr9	65593202	65594202	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151702, intron 10 of 11)	ID_B1|SINE|B4	6542.0	NM_001357527	208084.0	Mm.211032	NM_172453	ENSMUSG00000041064	Pif1	4631410M14|AI449441	PIF1 5'-to-3' DNA helicase	protein-coding	0.0	0.0	0.0	0.0	5.0	0.0
Merged-chr4-116720343-2	chr4	116719843	116720843	+	615.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146151)	promoter-TSS (NM_146151)	-612.0	NM_146151	230661.0	Mm.482431	NM_146151	ENSMUSG00000033985	Tesk2	-	testis-specific kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101374954-1	chr7	101374454	101375454	+	615.0	f1_c57bl6.idr	intron (NM_001040111, intron 3 of 33)	B1_Mus1|SINE|Alu	-3168.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	4.0	7.5	13.5	9.0	9.5	11.0
Merged-chr8-85076251-1	chr8	85075751	85076751	+	615.0	f1_c57bl6.idr	exon (NM_026399, exon 6 of 9)	exon (NM_026399, exon 6 of 9)	4494.0	NM_001039514	330817.0	Mm.193086	NM_201408	ENSMUSG00000060038	Dhps	Dhs	deoxyhypusine synthase	protein-coding	12.0	2.0	0.0	3.5	4.0	3.0
Merged-chr2-66408601-2	chr2	66408101	66409101	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313997, intron 1 of 26)	intron (NM_001313997, intron 1 of 26)	32236.0	NM_018733	20265.0	Mm.439704	NM_018733	ENSMUSG00000064329	Scn1a	B230332M13|Nav1.1	sodium channel, voltage-gated, type I, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146169164-2	chr3	146168664	146169664	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 2 of 13)	intron (NM_001005846, intron 2 of 13)	18990.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	0.0	0.5	3.0	0.0	0.5	3.0
Merged-chr7-35727686-2	chr7	35727186	35728186	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178704, intron 4 of 18)	L1_Mur3|LINE|L1	26768.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60874765-2	chr2	60874265	60875265	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	(TG)n|Simple_repeat|Simple_repeat	6673.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12830224-1	chr19	12829724	12830724	+	615.0	f0_balb.idr	intron (NM_134152, intron 7 of 8)	intron (NM_134152, intron 7 of 8)	-31553.0	NM_146702	258697.0	Mm.223132	NM_146702	ENSMUSG00000046272	Olfr1444	MOR202-4	olfactory receptor 1444	protein-coding	9.0	4.5	3.0	0.5	20.5	7.0
Merged-chr9-100590645-2	chr9	100590145	100591145	+	615.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19560.0	NM_001101483	245020.0	Mm.236289	NM_001101483	ENSMUSG00000070287	Slc35g2	Gm519|Tmem22	solute carrier family 35, member G2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31507539-1	chr16	31507039	31508039	+	615.0	f1_balb.idr	Intergenic	Intergenic	-77763.0	NR_152205	100047123.0	Mm.466711	NR_152205		Gm15743	-	predicted gene 15743	ncRNA	0.0	4.5	1.5	3.0	4.5	1.5
Merged-chr2-129626589-1	chr2	129626089	129627089	+	615.0	f1_c57bl6.idr	intron (NM_001355158, intron 7 of 8)	MTC|LTR|ERVL-MaLR	31127.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	22.0	34.0	12.5	9.0	12.0	37.5
Merged-chr10-77552156-2	chr10	77551656	77552656	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 8 of 15)	intron (NM_008404, intron 8 of 15)	21808.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8565759-1	chr11	8565259	8566259	+	615.0	f1_balb.idr	intron (NM_001083587, intron 4 of 30)	B4|SINE|B4	98776.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	25.5	51.0	38.5	21.0	14.5	23.0
Merged-chr2-9881814-2	chr2	9881314	9882314	+	615.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_024257, exon 2 of 5)	non-coding (NR_024257, exon 2 of 5)	568.0	NR_024257	381347.0	Mm.441450	NR_024257		4930412O13Rik	Gm10853	RIKEN cDNA 4930412O13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21217010-2	chr5	21216510	21217510	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 5 of 26)	intron (NR_153365, intron 5 of 26)	30743.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126515405-1	chr8	126514905	126515905	+	615.0	f0_balb.idr	Intergenic	Intergenic	-40340.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0.0	3.0	3.0	0.0	6.0	1.0
Merged-chr10-71327903-2	chr10	71327403	71328403	+	615.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	16946.0	NM_134007	52637.0	Mm.254114	NM_134007	ENSMUSG00000037710	Cisd1	AU043990|AW743335|D10Ertd214e|Zcd1|mitoNEET	CDGSH iron sulfur domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118693417-2	chr9	118692917	118693917	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 14 of 27)	intron (NM_133721, intron 14 of 27)	-18275.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-55416479-1	chr15	55415979	55416979	+	615.0	f1_balb.idr	intron (NM_181277, intron 19 of 47)	B3A|SINE|B2	108729.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125899770-1	chr7	125899270	125900270	+	615.0	f1_c57bl6.idr	intron (NM_001358885, intron 4 of 5)	intron (NM_001358885, intron 4 of 5)	182641.0	NM_001101488	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	5.0	0.0	0.0	2.0	0.0	0.5
Merged-chr12-76310214-2	chr12	76309714	76310714	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138745, intron 22 of 27)	B3A|SINE|B2	-14677.0	NM_001101471	238276.0	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-30611841-1	chr15	30611341	30612341	+	615.0	f1_balb.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-427285.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	43.5	40.0	42.5	14.5	14.5	19.5
Merged-chr7-98914195-1	chr7	98913695	98914695	+	615.0	f1_c57bl6.idr	intron (NM_178635, intron 13 of 14)	intron (NM_178635, intron 13 of 14)	75350.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.0	0.0	3.0	1.0	0.5	1.5
Merged-chr1-153742667-2	chr1	153742167	153743167	+	614.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_011267, intron 4 of 4)	intron (NM_011267, intron 4 of 4)	2314.0	NM_011267	19734.0	Mm.181709	NM_011267	ENSMUSG00000026475	Rgs16	Rgs14|Rgsr	regulator of G-protein signaling 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-31114200-2	chr7	31113700	31114700	+	614.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110252, intron 2 of 13)	intron (NM_001110252, intron 2 of 13)	1126.0	NM_008281	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	0.5	1.5	0.0	1.5	5.5	11.0
Merged-chr5-21327932-2	chr5	21327432	21328432	+	614.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 4 of 18)	intron (NM_029195, intron 4 of 18)	-44741.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35088052-2	chr17	35087552	35088552	+	614.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1239.0	NM_178592	193742.0	Mm.43745	NM_178592	ENSMUSG00000007036	Abhd16a	AI326074|Bat-5|Bat5|D17H6S82E|NG26	abhydrolase domain containing 16A	protein-coding	4.5	12.5	3.0	0.5	2.0	2.5
Merged-chr9-40271336-2	chr9	40270836	40271836	+	614.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286614, intron 2 of 6)	intron (NM_001286614, intron 2 of 6)	2120.0	NM_001359700	235281.0	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118232706-3	chr7	118232152	118233152	+	614.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001031814, intron 1 of 62)	intron (NM_001031814, intron 1 of 62)	10985.0	NM_001031814	233789.0	Mm.309053	NM_177180	ENSMUSG00000030655	Smg1	2610207I05Rik|5430435M13Rik|C130002K18Rik|mKIAA0421	SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)	protein-coding	6.0	14.5	5.5	1.5	13.0	2.5
Merged-chr2-5538953-2	chr2	5538532	5539532	+	614.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290375, intron 2 of 10)	intron (NM_001290375, intron 2 of 10)	137014.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	1.0	18.0	20.5	1.5	9.5	8.5
Merged-chr13-54684245-2	chr13	54683745	54684745	+	614.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146025, intron 2 of 10)	intron (NM_001146025, intron 2 of 10)	3563.0	NM_001146025	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	1.5	3.5	0.0	0.0	0.0	0.0
Merged-chr3-90218640-2	chr3	90218140	90219140	+	614.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293741, intron 1 of 7)	RMER17C|LTR|ERVK	-2144.0	NM_026677	68328.0	Mm.29355	NM_026677	ENSMUSG00000027935	Rab13	0610007N03Rik|B230212B15Rik	RAB13, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137881868-2	chr5	137881368	137882368	+	614.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10110.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-12274410-2	chr12	12273910	12274910	+	614.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	12271.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-75836644-3	chr12	75836145	75837145	+	614.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005510, intron 1 of 115)	intron (NM_001005510, intron 1 of 115)	18327.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139075333-3	chr5	139074826	139075826	+	614.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359099, intron 4 of 10)	intron (NM_001359099, intron 4 of 10)	54426.0	NM_008923	19085.0	Mm.306163	NM_008923	ENSMUSG00000025855	Prkar1b	AI385716|RIbeta	protein kinase, cAMP dependent regulatory, type I beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99283756-3	chr5	99283217	99284217	+	614.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30790.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	3.5	1.5	0.0	3.5	0.0
Merged-chr18-14812402-3	chr18	14811900	14812900	+	614.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001100449, intron 6 of 14)	CT-rich|Low_complexity|Low_complexity	29155.0	NM_001100449	72504.0	Mm.312233	NM_001100449	ENSMUSG00000054321	Taf4b	105kDa|2610524B04Rik|4932409F03Rik|AW987595|TAFII-105|TAFII105|Taf2c2	TATA-box binding protein associated factor 4b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-31675645-1	chr11	31675145	31676145	+	614.666687	f1_c57bl6.idr	Intergenic	Intergenic	-3783.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	0.0	3.5	1.5	0.0	2.0	5.0
Merged-chr19-5638671-2	chr19	5638172	5639172	+	614.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_009045, exon 3 of 11)	exon (NM_009045, exon 3 of 11)	1182.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	0.0	8.5	0.0	1.5	7.0	3.5
Merged-chr10-127065060-2	chr10	127064560	127065560	+	614.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355005, intron 3 of 6)	intron (NM_001355005, intron 3 of 6)	1525.0	NM_001355005	12567.0	Mm.6839	NM_009870	ENSMUSG00000006728	Cdk4	Crk3	cyclin-dependent kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-25762050-2	chr5	25761550	25762550	+	614.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310504, intron 1 of 10)	intron (NM_001310504, intron 1 of 10)	2077.0	NM_001004365	242894.0	Mm.150319	NM_001004365	ENSMUSG00000056367	Actr3b	9630005C02|ARP11|AW047569|Arp3b|Arp3beta	ARP3 actin-related protein 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155093612-3	chr2	155093105	155094105	+	614.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	6474.0	NR_040634	100504268.0	Mm.410858	NR_040634	ENSMUSG00000087254	2310005A03Rik	-	RIKEN cDNA 2310005A03 gene	ncRNA	4.0	22.5	6.0	1.0	14.5	7.0
Merged-chr10-61144663-2	chr10	61144163	61145163	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009163, intron 2 of 14)	AT_rich|Low_complexity|Low_complexity	3021.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152224387-1	chr4	152223887	152224887	+	614.5	f0_balb.idr	intron (NM_133348, intron 4 of 8)	intron (NM_133348, intron 4 of 8)	24543.0	NM_001146058	70025.0	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20870265-2	chr9	20869765	20870765	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175687, intron 3 of 7)	intron (NM_175687, intron 3 of 7)	1623.0	NM_175687	319278.0	Mm.249932	NM_175687	ENSMUSG00000038884	A230050P20Rik	RyDEN	RIKEN cDNA A230050P20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85282011-1	chr1	85281511	85282511	+	614.5	f1_balb.idr	Intergenic	RSINE1|SINE|B4	-11445.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-34114305-2	chr16	34113805	34114805	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 34 of 59)	intron (NM_177357, intron 34 of 59)	-147267.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60601267-2	chr13	60600767	60601767	+	614.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285917)	promoter-TSS (NM_001285917)	-680.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60734692-2	chr10	60734192	60735192	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 2 of 5)	intron (NM_023596, intron 2 of 5)	18090.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-63905962-2	chr7	63905462	63906462	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	L1MC3|LINE|L1	-10895.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	58.5	105.5	85.0	56.0	93.0	89.5
Merged-chr19-6014777-2	chr19	6014277	6015277	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110504, intron 1 of 21)	intron (NM_001110504, intron 1 of 21)	470.0	NM_007600	12333.0	Mm.6221	NM_007600	ENSMUSG00000024942	Capn1	Capa-1|Capa1|mu-calpin	calpain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-56795025-2	chr6	56794525	56795525	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145958, intron 1 of 3)	intron (NM_145958, intron 1 of 3)	2188.0	NM_001362211	210973.0	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-23615794-2	chr5	23615263	23616263	+	614.5	f0_balb.idr|f1_balb.idr	intron (NR_152854, intron 2 of 14)	intron (NR_152854, intron 2 of 14)	808.0	NM_001359175	20817.0	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	3.0	5.0	7.5	3.5	8.5	11.0
Merged-chr3-51236620-2	chr3	51236120	51237120	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009834, intron 1 of 2)	intron (NM_009834, intron 1 of 2)	12173.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79591381-2	chr11	79590881	79591881	+	614.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_175543, exon 1 of 15)	exon (NM_175543, exon 1 of 15)	169.0	NM_175543	268451.0	Mm.130656	NM_175543	ENSMUSG00000017639	Rab11fip4	A730072L08Rik|RAB11-FIP4|mKIAA1821	RAB11 family interacting protein 4 (class II)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150656288-2	chr2	150655788	150656788	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080575, intron 2 of 13)	intron (NM_080575, intron 2 of 13)	-11206.0	NR_040331	109344.0	Mm.440012	NR_040331	ENSMUSG00000087406	E130215H24Rik	-	RIKEN cDNA E130215H24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83296597-2	chr11	83296097	83297097	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134025, intron 3 of 3)	intron (NM_134025, intron 3 of 3)	2293.0	NR_028362	100302731.0		NR_028362	ENSMUSG00000065715	Snord7	-	small nucleolar RNA, C/D box 7	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54942945-2	chr6	54942445	54943445	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171007, intron 4 of 11)	intron (NM_001171007, intron 4 of 11)	28716.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-37877355-2	chr18	37876832	37877832	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007858, intron 16 of 26)	intron (NM_007858, intron 16 of 26)	-22672.0	NR_105945	102465592.0		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	3.0	8.0	5.0	1.5	4.0	3.0
Merged-chr8-72351636-2	chr8	72351136	72352136	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007944, intron 22 of 23)	intron (NM_007944, intron 22 of 23)	32574.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	1.0	4.0	4.0	4.0	4.0	8.5
Merged-chr13-37504063-1	chr13	37503563	37504563	+	614.5	f1_balb.idr	Intergenic	Lx8|LINE|L1	158718.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	19.0	0.5	8.0	3.5	7.5	4.0
Merged-chr17-21515386-2	chr17	21514849	21515849	+	614.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20190.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	2.5	1.5	0.0	4.0	1.5	4.0
Merged-chr12-100186539-2	chr12	100186039	100187039	+	614.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1429.0	NR_045282	100038378.0	Mm.387075	NR_045282	ENSMUSG00000072884	Gm10433	-	predicted gene 10433	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-76646775-2	chr2	76646275	76647275	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011871, intron 2 of 7)	intron (NM_011871, intron 2 of 7)	1219.0	NM_011871	23992.0	Mm.277250	NM_011871	ENSMUSG00000002731	Prkra	AV120107|PRK|Pact|RAX|lear	protein kinase, interferon inducible double stranded RNA dependent activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62226003-2	chr10	62225503	62226503	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 1 of 7)	MTB_Mm|LTR|ERVL-MaLR	5215.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123352840-2	chr8	123352340	123353340	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172287, intron 2 of 14)	intron (NM_172287, intron 2 of 14)	20127.0	NM_172287	234857.0	Mm.150200	NM_172287	ENSMUSG00000010154	Spire2	BC026502|Spir-2|Spir2	spire type actin nucleation factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-148615607-1	chr6	148615107	148616107	+	614.5	f0_balb.idr	Intergenic	Intergenic	-1298.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108008173-2	chr9	108007673	108008673	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013785, intron 1 of 5)	intron (NM_013785, intron 1 of 5)	5525.0	NM_013785	27399.0	Mm.276155	NM_013785	ENSMUSG00000032594	Ip6k1	1200016D08Rik|AU022776|Ihpk1|InsP6|InsP6k1|Itpk6	inositol hexaphosphate kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131524523-2	chr1	131524023	131525023	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	2838.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	6.0	22.5	17.5	5.0	15.5	9.5
Merged-chr4-8869719-2	chr4	8869219	8870219	+	614.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR51A_Mm|LTR|ERVK?	118395.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-139380328-2	chr2	139379828	139380828	+	614.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113585.0	NM_001356507	228677.0	Mm.100450	NM_175467	ENSMUSG00000039092	Sptlc3	C130053K05Rik	serine palmitoyltransferase, long chain base subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170875336-2	chr1	170874836	170875836	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356485, intron 4 of 4)	intron (NM_001356485, intron 4 of 4)	-7565.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-72808954-2	chr12	72808454	72809454	+	614.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6C|LTR|ERVK	47743.0	NM_008910	19042.0	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56883197-2	chr17	56882697	56883697	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030141, intron 8 of 13)	intron (NM_030141, intron 8 of 13)	7564.0	NM_030141	78625.0	Mm.160106	NM_030141	ENSMUSG00000024209	1700061G19Rik	1700026H02|AI507598	RIKEN cDNA 1700061G19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-60463726-2	chr14	60463226	60464226	+	614.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B2|LTR|ERVK	85440.0	NM_001164705	72125.0	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55661814-1	chr16	55661314	55662314	+	614.5	f0_balb.idr	Intergenic	Intergenic	160324.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25555052-2	chr2	25554552	25555552	+	614.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2848.0	NM_021519	59022.0	Mm.29945	NM_021519	ENSMUSG00000015092	Edf1	0610008L11Rik|AA409425	endothelial differentiation-related factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27737596-2	chr2	27737096	27738096	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 2 of 9)	intron (NM_001290481, intron 2 of 9)	27013.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43936562-2	chr1	43936062	43937062	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009418, intron 1 of 29)	intron (NM_009418, intron 1 of 29)	2568.0	NM_009418	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78459334-2	chr11	78458834	78459834	+	614.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6367.0	NM_026740	52466.0	Mm.131618	NM_026740	ENSMUSG00000020829	Slc46a1	1110002C08Rik|D11Ertd18e|HCP1|Pcft	solute carrier family 46, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88241740-1	chr1	88241240	88242240	+	614.5	f0_balb.idr	intron (NM_001281466, intron 19 of 41)	intron (NM_001281466, intron 19 of 41)	14720.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73745169-2	chr15	73744669	73745669	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	-2857.0	NM_008975	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3320502-2	chr8	3320002	3321002	+	614.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	-32913.0	NM_001033378	319493.0	Mm.234565	NM_001033378	ENSMUSG00000074497	A430078G23Rik	-	RIKEN cDNA A430078G23 gene	protein-coding	1.0	9.5	6.0	1.0	5.0	6.0
Merged-chr12-91850087-2	chr12	91849587	91850587	+	614.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011344)	promoter-TSS (NM_011344)	-930.0	NM_011344	20338.0	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23902011-2	chr18	23901511	23902511	+	614.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52677.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91646372-2	chr16	91645872	91646872	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010256, intron 1 of 21)	intron (NM_010256, intron 1 of 21)	600.0	NM_010256	14450.0	Mm.4505	NM_010256	ENSMUSG00000022962	Gart	Gaps|Prgs	phosphoribosylglycinamide formyltransferase	protein-coding	2.5	13.0	5.0	10.0	5.5	8.5
Merged-chr17-50570853-2	chr17	50570353	50571353	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	URR1B|DNA|hAT-Charlie	61306.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117073156-2	chr11	117072656	117073656	+	614.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-3627.0	NR_027059	76972.0	Mm.309167	NR_027059	ENSMUSG00000086859	Snhg20	2810008D09Rik	small nucleolar RNA host gene 20	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-8660006-2	chr8	8659506	8660506	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010111, intron 1 of 4)	CpG	767.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-76690638-2	chr2	76690138	76691138	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031256, intron 6 of 7)	intron (NM_031256, intron 6 of 7)	15323.0	NM_031256	83435.0	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101452580-2	chr11	101452080	101453080	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027320, intron 1 of 6)	intron (NM_027320, intron 1 of 6)	4168.0	NM_027320	70110.0	Mm.45558	NM_027320	ENSMUSG00000010358	Ifi35	2010008K16Rik|AW986054|IFP35|ifi-35	interferon-induced protein 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75887805-2	chr10	75887305	75888305	+	614.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-5593.0	NR_152573	70377.0	Mm.275878	NM_024440	ENSMUSG00000009092	Derl3	1810006I20Rik|1810063P04Rik|IZP6|derlin-3	Der1-like domain family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100425997-1	chr11	100425497	100426497	+	614.5	f0_balb.idr	intron (NM_026561, intron 8 of 8)	intron (NM_026561, intron 8 of 8)	10303.0	NM_001163481	14230.0	Mm.3894	NM_010221	ENSMUSG00000001555	Fkbp10	AI325255|FKBP-10|FKBP-65|FKBP65|Fkbp-rs1|Fkbp1-rs|Fkbp6|Fkbprp	FK506 binding protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr11-52363477-2	chr11	52362977	52363977	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011694, intron 1 of 8)	intron (NM_011694, intron 1 of 8)	2615.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95434001-2	chr8	95433501	95434501	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008187, intron 1 of 5)	intron (NM_008187, intron 1 of 5)	868.0	NM_008187	14894.0	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	3.0	4.5	3.5	3.0	4.5	3.5
Merged-chr17-36846942-2	chr17	36846450	36847450	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025599, intron 2 of 9)	intron (NM_001025599, intron 2 of 9)	9804.0	NM_001286726	22670.0	Mm.34587	NM_030698	ENSMUSG00000024457	Trim26	AI462198|Zfp173|Zfp1736	tripartite motif-containing 26	protein-coding	0.0	8.0	7.5	5.0	12.0	21.0
Merged-chr11-3102383-1	chr11	3101883	3102883	+	614.5	f1_balb.idr	Intergenic	GSAT_MM|Satellite|Satellite	-21638.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-52113065-2	chr5	52112565	52113565	+	614.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	22952.0	NR_105845	102466648.0		NR_105845	ENSMUSG00000098726	Mir6417	Gm27334|mmu-mir-6417	microRNA 6417	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170162483-2	chr1	170161983	170162983	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133806, intron 2 of 10)	intron (NM_133806, intron 2 of 10)	12481.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26726851-2	chr17	26726351	26727351	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029870, intron 1 of 8)	intron (NM_029870, intron 1 of 8)	11201.0	NM_029870	77128.0	Mm.275414	NM_029870	ENSMUSG00000048249	Crebrf	A930001N09Rik|LRF	CREB3 regulatory factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-37799941-2	chr2	37799441	37800441	+	614.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163566)	TTS (NM_001163566)	23692.0	NM_001163566	241324.0	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89255186-2	chr6	89254686	89255686	+	614.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30539.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-81829098-2	chr18	81828598	81829598	+	614.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	162982.0	NR_039589	100628596.0		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141019274-2	chr7	141018774	141019774	+	614.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2382.0	NM_001033632	213002.0	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-83723636-2	chr2	83723136	83724136	+	614.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008402)	promoter-TSS (NM_008402)	-761.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12474408-2	chr19	12473909	12474909	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172442, intron 7 of 8)	MLT1A1|LTR|ERVL-MaLR	13630.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	34.5	28.0	35.5	12.5	17.5	15.5
Merged-chr19-40713522-2	chr19	40713022	40714022	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 2 of 9)	intron (NM_001304721, intron 2 of 9)	53752.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-21288020-2	chr12	21287506	21288506	+	614.400024	f0_balb.idr|f1_balb.idr	intron (NM_018813, intron 1 of 17)	intron (NM_018813, intron 1 of 17)	1709.0	NM_018813	54451.0	Mm.356778	NM_018813	ENSMUSG00000054309	Cpsf3	-	cleavage and polyadenylation specificity factor 3	protein-coding	35.0	74.0	29.5	87.0	69.5	58.0
Merged-chr9-45253874-2	chr9	45253374	45254374	+	614.400024	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008348)	TTS (NM_008348)	12833.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83349042-2	chr15	83348542	83349542	+	614.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357756, intron 1 of 15)	intron (NM_001357756, intron 1 of 15)	1205.0	NM_001357756	66251.0	Mm.258910	NM_025445	ENSMUSG00000054277	Arfgap3	0610009H19Rik|1810004P07Rik|1810035F16Rik|9130416J18Rik|Arfgap1	ADP-ribosylation factor GTPase activating protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110417213-3	chr5	110416717	110417717	+	614.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142642, intron 3 of 18)	intron (NM_001142642, intron 3 of 18)	-30090.0	NM_028596	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	0.0	8.0	3.0	1.0	0.0	0.0
Merged-chr13-113587593-3	chr13	113587082	113588082	+	614.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30982.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-49488600-2	chr18	49488100	49489100	+	614.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34689.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113641639-2	chr6	113641139	113642139	+	614.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 1 of 11)	G-rich|Low_complexity|Low_complexity	3172.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118870657-2	chr9	118870092	118871092	+	614.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 10 of 13)	MTE2a|LTR|ERVL-MaLR	-55944.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	6.5	5.0	12.5	5.0	8.0	0.0
Merged-chr16-36708175-5	chr16	36707665	36708665	+	614.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 1 of 7)	intron (NM_001285788, intron 1 of 7)	14187.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134267272-2	chr6	134266772	134267772	+	614.166687	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007961, exon 8 of 8)	3' UTR (NM_007961, exon 8 of 8)	-129057.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0.0	0.0	0.0	0.0	1.5	6.0
Merged-chr11-114888966-2	chr11	114888466	114889466	+	614.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-1075.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108984573-3	chr8	108984077	108985077	+	614.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	47717.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95506615-2	chr9	95506115	95507115	+	614.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357977, intron 1 of 25)	URR1B|DNA|hAT-Charlie	5381.0	NM_001357975	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98378143-2	chr11	98377643	98378643	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021547, intron 9 of 14)	intron (NM_021547, intron 9 of 14)	-5668.0	NM_011540	21393.0	Mm.10762	NM_011540	ENSMUSG00000007877	Tcap	AI503981|AJ223855	titin-cap	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34359638-1	chr17	34359138	34360138	+	614.0	f1_c57bl6.idr	intron (NM_079835, intron 3 of 8)	B3|SINE|B2	4816.0	NM_079835	547431.0	Mm.441007	NM_079835	ENSMUSG00000024340	Btnl2	BTL-II|BTLN2|Btl2|Gm315|NG9	butyrophilin-like 2	protein-coding	6.0	4.5	2.0	2.0	7.0	2.5
Merged-chr4-58553868-1	chr4	58553368	58554368	+	614.0	f1_balb.idr	promoter-TSS (NM_010336)	promoter-TSS (NM_010336)	-377.0	NM_010336	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0.5	2.5	0.5	0.0	0.0	2.0
Merged-chr2-110207050-1	chr2	110206550	110207550	+	614.0	f1_c57bl6.idr	Intergenic	B4|SINE|B4	98675.0	NM_130452	170442.0	Mm.27335	NM_130452	ENSMUSG00000041660	Bbox1	AI874739	butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase)	protein-coding	0.0	4.5	0.0	0.0	11.0	0.0
Merged-chr8-95850507-2	chr8	95850007	95851007	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172758, intron 2 of 11)	intron (NM_172758, intron 2 of 11)	2984.0	NM_172758	234595.0	Mm.29267	NM_172758	ENSMUSG00000036534	Slc38a7	D430050E18	solute carrier family 38, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34681232-1	chr17	34680732	34681732	+	614.0	f1_balb.idr	intron (NM_031176, intron 5 of 32)	intron (NM_031176, intron 5 of 32)	10697.0	NM_031176	81877.0	Mm.290527	NM_031176	ENSMUSG00000033327	Tnxb	Tn-mhc|Tnx	tenascin XB	protein-coding	6.0	7.0	0.5	2.0	0.0	5.0
Merged-chr16-91526158-2	chr16	91525658	91526658	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	1386.0	NR_105786	102465190.0		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	1.5	15.0	0.0	1.5	12.0	0.0
Merged-chr4-45519779-2	chr4	45519279	45520279	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 1 of 5)	L2a|LINE|L2	11049.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23738845-1	chr17	23738345	23739345	+	614.0	f1_balb.idr	intron (NM_023824, intron 1 of 2)	intron (NM_023824, intron 1 of 2)	1485.0	NM_023824	76498.0	Mm.491253	NM_023824	ENSMUSG00000023909	Paqr4	1500004C10Rik	progestin and adipoQ receptor family member IV	protein-coding	2.0	6.5	4.5	5.5	9.0	1.5
Merged-chr12-110806571-2	chr12	110806071	110807071	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34368.0	NM_011973	26448.0	Mm.140948	NM_011973	ENSMUSG00000056458	Mok	RAGE1|Rage|Stk30	MOK protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-62497279-1	chr3	62496779	62497779	+	614.0	f0_c57.idr	intron (NM_028136, intron 4 of 24)	MER2|DNA|TcMar-Tigger	9709.0	NM_028136	72162.0	Mm.224233	NM_028136	ENSMUSG00000027770	Dhx36	2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488	DEAH (Asp-Glu-Ala-His) box polypeptide 36	protein-coding	0.0	12.0	1.0	3.0	3.0	4.0
Merged-chr13-101522994-1	chr13	101522494	101523494	+	614.0	f1_balb.idr	Intergenic	Intergenic	-125414.0	NR_046187	78136.0	Mm.399065	NR_046187		4922502H24Rik	-	RIKEN cDNA 4922502H24 gene	ncRNA	8.5	20.5	9.0	12.0	24.5	23.5
Merged-chr11-76695182-2	chr11	76694682	76695682	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177709, intron 2 of 2)	intron (NM_177709, intron 2 of 2)	15309.0	NM_177709	237858.0	Mm.127006	NM_177709	ENSMUSG00000046275	Tusc5	C130069F04Rik|DSPB1|Lost1	tumor suppressor candidate 5	protein-coding	0.0	1.0	0.5	0.0	3.5	0.0
Merged-chr10-107358696-2	chr10	107358196	107359196	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039354, intron 2 of 5)	intron (NM_001039354, intron 2 of 5)	86302.0	NM_001284329	108030.0	Mm.268025	NM_001033223	ENSMUSG00000019906	Lin7a	AI848705|LIN-7A|MALS-1|TIP-33|Veli|Veli1	lin-7 homolog A (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61342735-2	chr11	61342235	61343235	+	614.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026183)	TTS (NM_026183)	125.0	NM_001033542	380701.0	Mm.340166	NM_001033542	ENSMUSG00000069855	Slc47a2	4933429E10Rik	solute carrier family 47, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9990947-2	chr19	9990445	9991445	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011913, intron 6 of 11)	RMER17C|LTR|ERVK	8299.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	3.5	2.0	1.5	1.0	1.5	2.5
Merged-chr14-120572474-1	chr14	120571974	120572974	+	614.0	f0_balb.idr	Intergenic	Intergenic	94013.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.0	2.0	0.0	0.0	0.0	0.0
Merged-chr14-121875074-1	chr14	121874574	121875574	+	614.0	f1_balb.idr	Intergenic	Intergenic	3196.0	NR_131002	78312.0	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	0.0	1.5	1.0	0.0	13.5	0.0
Merged-chr3-67583948-2	chr3	67583448	67584448	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025813, intron 1 of 15)	intron (NM_025813, intron 1 of 15)	1180.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	8.0	6.0	3.0	10.5	5.5	6.5
Merged-chr11-98209167-2	chr11	98208667	98209667	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026952, intron 1 of 12)	B1_Mus1|SINE|Alu	5862.0	NM_001109626	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55403688-1	chr16	55403188	55404188	+	614.0	f1_c57bl6.idr	Intergenic	Intergenic	-91043.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54883112-2	chr18	54882612	54883612	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	107068.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55235027-2	chr19	55234527	55235527	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 3 of 20)	intron (NM_001081076, intron 3 of 20)	6209.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27854444-2	chr17	27853944	27854944	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2063.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	0.0	1.5	0.0	1.0	0.0	0.0
Merged-chr10-93567873-2	chr10	93567364	93568364	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359749, intron 6 of 13)	intron (NM_001359749, intron 6 of 13)	12983.0	NM_001359749	237465.0	Mm.477086	NM_175488	ENSMUSG00000036168	Ccdc38	4933417K05Rik	coiled-coil domain containing 38	protein-coding	2.0	3.0	9.0	0.5	0.5	1.5
Merged-chr11-54724748-2	chr11	54724248	54725248	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178626, intron 3 of 5)	PB1D10|SINE|Alu	62955.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-45167628-2	chr14	45167128	45168128	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310534, intron 9 of 20)	(TG)n|Simple_repeat|Simple_repeat	51797.0	NM_172597	70561.0	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-41191163-1	chr17	41190663	41191663	+	614.0	f1_balb.idr	Intergenic	ETnERV-int|LTR|ERVK	256478.0	NM_008650	17850.0	Mm.259884	NM_008650	ENSMUSG00000023921	Mut	D230010K02Rik|Mcm	methylmalonyl-Coenzyme A mutase	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr2-68982984-1	chr2	68982484	68983484	+	614.0	f0_balb.idr	intron (NM_001347161, intron 3 of 10)	Lx8|LINE|L1	121543.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32957879-2	chr19	32957379	32958379	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-199233.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-60142259-2	chr8	60141759	60142759	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	316610.0	NR_126087	75017.0	Mm.60775	NR_126087	ENSMUSG00000110406	4930470O06Rik	-	RIKEN cDNA 4930470O06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150620743-2	chr4	150620243	150621243	+	614.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001085492, exon 23 of 23)	3' UTR (NM_001085492, exon 23 of 23)	31431.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.0	3.5	0.0	0.0	0.0	0.0
Merged-chr11-94566996-2	chr11	94566496	94567496	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007689, intron 1 of 3)	intron (NM_007689, intron 1 of 3)	1949.0	NM_007689	12643.0	Mm.440523	NM_007689	ENSMUSG00000039084	Chad	SLRR4A	chondroadherin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8861619-1	chr10	8861119	8862119	+	614.0	f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	24451.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	4.5	1.5	1.5	1.0	7.0	5.5
Merged-chr2-26359715-2	chr2	26359215	26360215	+	614.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037747)	promoter-TSS (NM_001037747)	-168.0	NM_001037747	332579.0	Mm.330064	NM_001037747	ENSMUSG00000026928	Card9	Gm782	caspase recruitment domain family, member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87596697-1	chr17	87596197	87597197	+	614.0	f0_balb.idr	Intergenic	RLTR45|LTR|ERVK	-39282.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	9.0	12.0	4.0	11.0	0.5	9.0
Merged-chr11-101971005-2	chr11	101970505	101971505	+	614.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028207)	TTS (NM_028207)	-3990.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-72762340-2	chr12	72761860	72762860	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008910, intron 1 of 5)	intron (NM_008910, intron 1 of 5)	1149.0	NM_008910	19042.0	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	1.0	3.5	5.5	5.5	2.5	2.0
Merged-chr11-70716265-2	chr11	70715765	70716765	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153103, intron 16 of 22)	intron (NM_153103, intron 16 of 22)	10275.0	NR_105890	102465557.0		NR_105890	ENSMUSG00000105932	Mir6925	mmu-mir-6925	microRNA 6925	ncRNA	0.0	0.0	0.0	0.0	3.0	1.5
Merged-chr5-107727098-2	chr5	107726598	107727598	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1293.0	NM_001267621	14581.0	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59241592-2	chr2	59241092	59242092	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	80742.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-68864536-2	chr2	68864036	68865036	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	intron (NM_001347161, intron 1 of 10)	3095.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91740535-2	chr6	91740035	91741035	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 7 of 14)	intron (NM_009320, intron 7 of 14)	56468.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-52228074-2	chr1	52227574	52228574	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081081, intron 1 of 17)	intron (NM_001081081, intron 1 of 17)	5158.0	NM_001081081	14660.0	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105274924-2	chr8	105274424	105275424	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045689, intron 11 of 12)	intron (NR_045689, intron 11 of 12)	-1523.0	NM_030152	78688.0	Mm.475715	NM_030152	ENSMUSG00000014776	Nol3	ARC|B430311C09Rik|MYC|NOP|Nop30	nucleolar protein 3 (apoptosis repressor with CARD domain)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166490561-2	chr2	166490061	166491061	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	43110.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81295068-2	chr10	81294568	81295568	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	2105.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-44053132-1	chr5	44052632	44053632	+	614.0	f1_balb.idr	intron (NM_001163578, intron 3 of 22)	intron (NM_001163578, intron 3 of 22)	41636.0	NM_001163581	19126.0	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	27.5	83.5	82.5	3.5	5.5	4.5
Merged-chr2-11402865-2	chr2	11402365	11403365	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4365.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74507467-2	chr1	74506967	74507967	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021383, intron 1 of 7)	intron (NM_021383, intron 1 of 7)	1407.0	NM_021383	58184.0	Mm.291708	NM_021383	ENSMUSG00000026174	Cnot9	2610007F23Rik|AI593551|Fl10|Rqcd1	CCR4-NOT transcription complex, subunit 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145786163-1	chr2	145785663	145786663	+	614.0	f0_balb.idr	promoter-TSS (NM_028724)	promoter-TSS (NM_028724)	47.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-83231410-2	chr12	83230910	83231910	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001267625, intron 8 of 10)	intron (NM_001267625, intron 8 of 10)	256326.0	NM_001267626	70127.0	Mm.151308	NM_058212	ENSMUSG00000021221	Dpf3	2810403B03Rik|6530402L11Rik|BAF45C|C78788|CERD4|cer-d4	D4, zinc and double PHD fingers, family 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88301524-2	chr1	88301024	88302024	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5188.0	NM_134252	171382.0	Mm.218753	NM_134252	ENSMUSG00000036251	Trpm8	CMR1|LTRPC6|LTrpC-6|TRPP8|Trp-p8	transient receptor potential cation channel, subfamily M, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-38079902-1	chr5	38079402	38080402	+	614.0	f1_c57bl6.idr	intron (NM_001359398, intron 1 of 9)	intron (NM_001359398, intron 1 of 9)	40672.0	NM_026959	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	0.0	0.0	1.0	0.0	1.5	3.0
Merged-chr2-127483340-2	chr2	127482840	127483840	+	614.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111331)	promoter-TSS (NM_001111331)	-841.0	NM_001111331	56461.0	Mm.315292	NM_019789	ENSMUSG00000079056	Kcnip3	4933407H12Rik|AI413860|Csen|DREAM|KChIP3|R74849	Kv channel interacting protein 3, calsenilin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32130553-2	chr5	32130053	32131053	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5919.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102321453-2	chr12	102320921	102321921	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 2 of 9)	intron (NM_177620, intron 2 of 9)	37780.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0.5	2.0	8.0	0.0	1.0	7.0
Merged-chr6-50074916-1	chr6	50074416	50075416	+	614.0	f1_balb.idr	Intergenic	RMER3D-int|LTR|ERVK	-35325.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	5.5	9.5	18.5	7.5	77.5	51.0
Merged-chr10-100148296-1	chr10	100147796	100148796	+	614.0	f0_c57.idr	Intergenic	Intergenic	132475.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32128051-2	chr12	32127551	32128551	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66772.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	1.0	10.5	1.5	0.0	0.0	2.0
Merged-chr1-105803091-2	chr1	105802591	105803591	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	22368.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-150010687-2	chr1	150010187	150011187	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49397.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79673210-1	chr3	79672710	79673710	+	614.0	f0_balb.idr	intron (NM_212452, intron 5 of 17)	(CAAA)n|Simple_repeat|Simple_repeat	44131.0	NM_029482	75939.0	Mm.221520	NM_029482	ENSMUSG00000027811	4930579G24Rik	-	RIKEN cDNA 4930579G24 gene	protein-coding	1.0	4.0	0.5	0.0	4.0	0.5
Merged-chr3-27687227-2	chr3	27686727	27687727	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 1 of 26)	intron (NM_001356953, intron 1 of 26)	23225.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103456800-2	chr2	103456300	103457300	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009804, intron 11 of 12)	intron (NM_009804, intron 11 of 12)	28353.0	NM_009804	12359.0	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	3.0	6.5	0.0	4.0	4.0	2.5
Merged-chr1-106149317-2	chr1	106148817	106149817	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22207.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45513763-1	chr7	45513263	45514263	+	614.0	f1_c57bl6.idr	promoter-TSS (NM_008807)	promoter-TSS (NM_008807)	57.0	NM_001045555	56734.0	Mm.439742	NM_008807	ENSMUSG00000023467	Tulp2	Pdet	tubby-like protein 2	protein-coding	0.0	0.0	0.0	3.0	0.0	1.0
Merged-chr7-27529451-2	chr7	27528951	27529951	+	614.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033315, exon 3 of 4)	exon (NM_001033315, exon 3 of 4)	6190.0	NM_001033315	233020.0	Mm.429716	NM_001033315	ENSMUSG00000040424	Hipk4	Gm162	homeodomain interacting protein kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-39448945-1	chr7	39448445	39449445	+	614.0	f0_balb.idr	promoter-TSS (NM_001243021)	promoter-TSS (NM_001243021)	-573.0	NM_001243021	233147.0	Mm.148946	NM_001243021	ENSMUSG00000030424	Zfp939	9430025M13Rik	zinc finger protein 939	protein-coding	8.0	28.0	26.0	3.0	24.0	18.5
Merged-chr7-45865453-2	chr7	45864953	45865953	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008172, intron 1 of 11)	intron (NM_008172, intron 1 of 11)	1228.0	NM_008172	14814.0	Mm.322594	NM_008172	ENSMUSG00000002771	Grin2d	GluN2D|NMDAR2D|NR2D	glutamate receptor, ionotropic, NMDA2D (epsilon 4)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85277208-1	chr1	85276708	85277708	+	614.0	f1_balb.idr	Intergenic	Intergenic	-6642.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103010168-1	chr2	103009668	103010668	+	614.0	f1_c57bl6.idr	Intergenic	Intergenic	63345.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	67.5	158.5	118.0	76.5	168.5	123.0
Merged-chr4-95196396-2	chr4	95195896	95196896	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-144174.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-58087266-1	chr19	58086766	58087766	+	614.0	f0_balb.idr	intron (NM_181415, intron 28 of 28)	RLTR45|LTR|ERVK	36099.0	NR_049196	100885835.0		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	10.0	9.0	5.5	10.0	25.5	4.0
Merged-chr4-106631092-1	chr4	106630592	106631592	+	614.0	f1_c57bl6.idr	intron (NM_177667, intron 1 of 6)	intron (NM_177667, intron 1 of 6)	8643.0	NM_177667	230576.0	Mm.41945	NM_177667	ENSMUSG00000034919	Ttc22	4732467L16Rik	tetratricopeptide repeat domain 22	protein-coding	1.0	0.0	3.5	0.5	6.5	0.0
Merged-chr2-118576928-1	chr2	118576428	118577428	+	614.0	f1_balb.idr	Intergenic	Intergenic	-21283.0	NM_009773	12236.0	Mm.29133	NM_009773	ENSMUSG00000040084	Bub1b	AU045529|BUBR1	BUB1B, mitotic checkpoint serine/threonine kinase	protein-coding	21.0	14.5	22.5	6.5	14.5	9.0
Merged-chr2-120973043-1	chr2	120972543	120973543	+	614.0	f1_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2328.0	NM_009461	22222.0	Mm.389330	NM_009461	ENSMUSG00000027272	Ubr1	AI504731	ubiquitin protein ligase E3 component n-recognin 1	protein-coding	7.0	12.5	3.5	2.0	3.0	1.5
Merged-chr11-100628769-1	chr11	100628269	100629269	+	614.0	f1_c57bl6.idr	3' UTR (NM_177790, exon 8 of 8)	3' UTR (NM_177790, exon 8 of 8)	5814.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	2.0	4.5	1.0	1.5	4.0	0.0
Merged-chr5-113173546-1	chr5	113173046	113174046	+	614.0	f1_balb.idr	Intergenic	Intergenic	-10233.0	NM_172884	243219.0	Mm.160131	NM_172884	ENSMUSG00000051339	2900026A02Rik	8430408O14Rik|A530094D01|AW539426|Gm449|Kiaa1671|mKIAA1671	RIKEN cDNA 2900026A02 gene	protein-coding	0.0	0.0	0.0	2.0	0.0	0.0
Merged-chr8-117334589-2	chr8	117334089	117335089	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-14581.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76799586-2	chr12	76799086	76800086	+	614.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_134050, exon 7 of 7)	3' UTR (NM_134050, exon 7 of 7)	-4032.0	NM_030677	14776.0	Mm.441856	NM_030677	ENSMUSG00000042808	Gpx2	GI-GPx|GPx-GI|GSHPx-2|GSHPx-GI	glutathione peroxidase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-116077974-2	chr2	116077474	116078474	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153841, intron 2 of 4)	intron (NR_153841, intron 2 of 4)	-1878.0	NR_033447	69974.0	Mm.440293	NR_033447		2810405F15Rik	-	RIKEN cDNA 2810405F15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr11-117109345-1	chr11	117108845	117109845	+	614.0	f0_balb.idr	Intergenic	Intergenic	-5827.0	NR_029459	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136655917-1	chr6	136655417	136656417	+	614.0	f1_balb.idr	intron (NM_025806, intron 1 of 10)	intron (NM_025806, intron 1 of 10)	5976.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	45.0	129.0	86.0	35.5	81.5	31.0
Merged-chr2-59340259-1	chr2	59339759	59340759	+	614.0	f0_balb.idr	intron (NM_175464, intron 15 of 20)	intron (NM_175464, intron 15 of 20)	46423.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-15986797-2	chr7	15986297	15987297	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081418, intron 6 of 13)	intron (NM_001081418, intron 6 of 13)	12698.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-45038439-2	chr16	45037949	45038949	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B2|LTR|ERVL	-55562.0	NM_026439	67896.0	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	3.0	14.5	7.0	4.0	18.0	20.5
Merged-chr13-45943291-2	chr13	45942791	45943791	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 2 of 6)	Lx8|LINE|L1	21700.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-136973170-2	chr7	136972670	136973670	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008598, intron 2 of 4)	intron (NM_008598, intron 2 of 4)	78559.0	NM_008598	17314.0	Mm.440219	NM_008598	ENSMUSG00000054612	Mgmt	AGT|AI267024|Agat	O-6-methylguanine-DNA methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-69165187-2	chr10	69164687	69165687	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43365.0	NM_001252636	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8482337-2	chr12	8481837	8482837	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17672.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	0.0	0.5	0.0	3.0	0.0	0.0
Merged-chr2-104847804-2	chr2	104847304	104848304	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178695, intron 2 of 5)	L2b|LINE|L2	2046.0	NM_178695	228413.0	Mm.259609	NM_178695	ENSMUSG00000027171	Prrg4	9930111I18Rik|TMG4	proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)	protein-coding	2.0	0.0	6.0	2.0	0.0	3.0
Merged-chr1-192598567-2	chr1	192598067	192599067	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 9 of 11)	intron (NM_144881, intron 9 of 11)	172652.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81370776-2	chr10	81370276	81371276	+	614.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_019757, exon 5 of 14)	exon (NM_019757, exon 5 of 14)	-4956.0	NM_001014836	432479.0	Mm.440450	NM_001014836	ENSMUSG00000020234	4930404N11Rik	2210409H10Rik|5730551K18Rik|AI854616	RIKEN cDNA 4930404N11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-10458380-1	chr10	10457880	10458880	+	614.0	f1_balb.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	13934.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	134.5	240.0	167.0	50.5	113.0	82.0
Merged-chr1-64306406-2	chr1	64305906	64306906	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-185017.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130068199-1	chr2	130067699	130068699	+	614.0	f1_c57bl6.idr	Intergenic	Intergenic	-32195.0	NM_001033197	99169.0	Mm.404938	NM_001033197		AU015228	-	expressed sequence AU015228	protein-coding	3.0	3.5	3.0	2.0	4.0	2.5
Merged-chr1-147944846-2	chr1	147944346	147945346	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1447159.0	NM_001145807	215378.0	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-46184401-2	chr7	46183901	46184901	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-4368.0	NM_011510	20927.0	Mm.259076	NM_011510	ENSMUSG00000040136	Abcc8	D930031B21Rik|SUR1|Sur	ATP-binding cassette, sub-family C (CFTR/MRP), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-55400730-2	chr8	55400230	55401230	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	446002.0	NM_001253756	234267.0	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113613988-2	chr5	113613488	113614488	+	614.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001359060, exon 5 of 5)	exon (NM_001359060, exon 5 of 5)	29615.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113639343-2	chr13	113638843	113639843	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20779.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118353656-2	chr2	118353156	118354156	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201367, intron 1 of 2)	intron (NM_201367, intron 1 of 2)	19763.0	NM_201367	381413.0	Mm.70979	NM_201367	ENSMUSG00000040133	Gpr176	Gm1012	G protein-coupled receptor 176	protein-coding	7.5	4.0	5.0	1.0	0.0	1.5
Merged-chr5-38563052-1	chr5	38562552	38563552	+	614.0	f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-1457.0	NM_011715	22388.0	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	1.0	1.5	1.0	0.0	0.0	0.0
Merged-chr15-35298692-2	chr15	35298192	35299192	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054049, intron 1 of 3)	intron (NM_054049, intron 1 of 3)	2580.0	NM_054049	107587.0	Mm.46336	NM_054049	ENSMUSG00000022330	Osr2	5430409I15Rik|Osr2A|Osr2B	odd-skipped related 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171504782-2	chr1	171504267	171505267	+	614.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019484)	TTS (NM_019484)	1289.0	NM_019484	56009.0	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	6.0	20.0	14.0	5.5	6.5	9.5
Merged-chr10-126021870-2	chr10	126021370	126022370	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	55651.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-85319375-2	chr9	85318875	85319875	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(ATGTG)n|Simple_repeat|Simple_repeat	7749.0	NM_001160378	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131063876-1	chr2	131063376	131064376	+	614.0	f1_balb.idr	promoter-TSS (NM_001163529)	promoter-TSS (NM_001163529)	-62.0	NM_001163529	110751.0	Mm.108550	NM_033615	ENSMUSG00000027318	Adam33	Adaml	a disintegrin and metallopeptidase domain 33	protein-coding	4.0	0.0	0.0	0.0	0.0	1.0
Merged-chr19-28648956-2	chr19	28648456	28649456	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175459, intron 2 of 10)	intron (NM_175459, intron 2 of 10)	-29268.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6388370-2	chr11	6387870	6388870	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6755.0	NM_001005867	52915.0	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52775656-2	chr6	52775156	52776156	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 4 of 4)	intron (NM_173406, intron 4 of 4)	61491.0	NM_001355596	52440.0	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126842856-2	chr8	126842356	126843356	+	613.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6164.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-122833306-2	chr4	122832806	122833806	+	613.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2921.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108348729-2	chr9	108348229	108349229	+	613.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011678, intron 1 of 21)	intron (NM_011678, intron 1 of 21)	898.0	NM_011678	22258.0	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-36925150-2	chr19	36924650	36925650	+	613.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080706)	promoter-TSS (NM_001080706)	-929.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-7998040-2	chr14	7997540	7998540	+	613.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3858.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3859672-2	chr12	3859172	3860172	+	613.833313	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045884, exon 4 of 4)	non-coding (NR_045884, exon 4 of 4)	2572.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43585079-2	chr7	43584579	43585579	+	613.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357769, intron 2 of 3)	B3|SINE|B2	5493.0	NM_001357769	210105.0	Mm.234422	NM_172482	ENSMUSG00000030469	Zfp719	8030458J18|9430094P17Rik|C630016O21Rik|mszf6	zinc finger protein 719	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134921506-2	chr4	134921006	134922006	+	613.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-2119.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79794682-2	chr10	79794182	79795182	+	613.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_023128, intron 1 of 8)	intron (NM_023128, intron 1 of 8)	1110.0	NM_001161747	18483.0	Mm.34650	NM_023128	ENSMUSG00000035863	Palm	-	paralemmin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-66135102-2	chr16	66134602	66135602	+	613.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	319469.0	NM_028572	73569.0	Mm.25670	NM_028572	ENSMUSG00000091243	Vgll3	1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2	vestigial like family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117125664-2	chr4	117125153	117126153	+	613.75	f0_balb.idr|f1_balb.idr	promoter-TSS (NR_024078)	promoter-TSS (NR_024078)	72.0	NR_024078	78611.0	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	171.5	469.0	320.5	182.0	469.0	325.5
Merged-chr7-19028977-2	chr7	19028477	19029477	+	613.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_026605, exon 2 of 27)	exon (NM_026605, exon 2 of 27)	4600.0	NM_026605	68188.0	Mm.130902	NM_026605	ENSMUSG00000023118	Sympk	1500016F02Rik|4632415H16Rik|AA125406|AI449890|SPK|SYM	symplekin	protein-coding	0.0	1.5	2.0	0.0	0.0	1.0
Merged-chr16-8778871-2	chr16	8778371	8779371	+	613.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19-int|LTR|ERVK	-40529.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35625016-2	chr8	35624526	35625526	+	613.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-36006.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	15.5	23.5	18.5	8.5	29.0	24.5
Merged-chr5-53213629-3	chr5	53213123	53214123	+	613.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172710)	promoter-TSS (NM_172710)	-171.0	NM_172710	231238.0	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32926000-3	chr9	32925494	32926494	+	613.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131058, intron 1 of 3)	intron (NR_131058, intron 1 of 3)	2972.0	NR_131058	330917.0	Mm.488283	NR_131058		Gm27162	A430016B06	predicted gene 27162	ncRNA	0.0	0.0	0.0	3.5	0.0	0.0
Merged-chr16-55802677-3	chr16	55802166	55803166	+	613.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19472.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-22986503-1	chr2	22986003	22987003	+	613.666687	f0_balb.idr	intron (NM_001077190, intron 2 of 10)	intron (NM_001077190, intron 2 of 10)	53738.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-153572641-2	chr3	153572141	153573141	+	613.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 1 of 4)	intron (NM_011372, intron 1 of 4)	152492.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127615235-2	chr10	127614714	127615714	+	613.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 1 of 88)	intron (NM_008512, intron 1 of 88)	5934.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0.5	8.0	1.0	2.5	4.5	0.5
Merged-chr2-127359652-2	chr2	127359152	127360152	+	613.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3634.0	NM_009633	11552.0	Mm.347390	NM_009633	ENSMUSG00000058620	Adra2b	Adra-2b|[a]2B|a2b-AR|alpha2-C2|alpha2B	adrenergic receptor, alpha 2b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11112788-2	chr8	11112288	11113288	+	613.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-104358.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79778683-2	chr10	79778183	79779183	+	613.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_031380, exon 2 of 5)	exon (NM_031380, exon 2 of 5)	1409.0	NM_031380	83554.0	Mm.251710	NM_031380	ENSMUSG00000020325	Fstl3	E030038F23Rik|Flrg	follistatin-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121759304-4	chr9	121758728	121759728	+	613.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166644)	promoter-TSS (NM_001166644)	715.0	NR_033503	320301.0	Mm.373883	NR_033503		E530011L22Rik	-	RIKEN cDNA E530011L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139387127-2	chr7	139386627	139387627	+	613.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1982.0	NM_183144	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84430977-2	chr17	84430477	84431477	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 17 of 37)	ID_B1|SINE|B4	35231.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35729399-2	chr18	35728899	35729899	+	613.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033168, exon 2 of 2)	3' UTR (NM_001033168, exon 2 of 2)	2410.0	NM_001033168	73449.0	Mm.379225	NM_001033168	ENSMUSG00000073598	1700066B19Rik	SMIM33	RIKEN cDNA 1700066B19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6440238-2	chr2	6439738	6440738	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181399, intron 13 of 13)	intron (NM_181399, intron 13 of 13)	87502.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101937407-2	chr11	101936907	101937907	+	613.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	GC_rich|Low_complexity|Low_complexity	-15014.0	NR_045806	73887.0	Mm.159084	NR_045806	ENSMUSG00000071818	4930417O22Rik	-	RIKEN cDNA 4930417O22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-32597628-2	chr14	32597128	32598128	+	613.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1780.0	NM_001347590	107751.0	Mm.119274	NM_001001796	ENSMUSG00000041730	Prrxl1	Drg11|Drgx	paired related homeobox protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166450687-2	chr2	166450187	166451187	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_015558, intron 1 of 2)	intron (NR_015558, intron 1 of 2)	3236.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12763587-2	chr17	12763087	12764087	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010515, intron 1 of 47)	MER20|DNA|hAT-Charlie	6119.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48451723-2	chr17	48451223	48452223	+	613.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027292)	promoter-TSS (NM_027292)	-222.0	NM_027292	70026.0	Mm.22613	NM_027292	ENSMUSG00000023995	Tspo2	2510027D20Rik|Bzrpl1	translocator protein 2	protein-coding	0.0	0.0	0.0	1.0	2.5	0.0
Merged-chr11-115074345-2	chr11	115073823	115074823	+	613.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-12284.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8929458-2	chr12	8928958	8929958	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008640, intron 1 of 6)	L1MA6|LINE|L1	8151.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	7.0	0.0	4.5	3.5	19.5	5.0
Merged-chr4-71489952-2	chr4	71489452	71490452	+	613.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	710941.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52965724-2	chr6	52965224	52966224	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 1 of 4)	intron (NM_173406, intron 1 of 4)	-56104.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-89676721-2	chr18	89676221	89677221	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039173, intron 1 of 7)	L1_Mur2|LINE|L1	92415.0	NM_001039173	623279.0	Mm.447164	NM_001039173	ENSMUSG00000073514	Dok6	Dok-6	docking protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12374441-2	chr15	12373941	12374941	+	613.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081064, exon 19 of 24)	exon (NM_001081064, exon 19 of 24)	52945.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57894482-2	chr15	57893982	57894982	+	613.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2064.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23678351-2	chr11	23677851	23678851	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033654, intron 4 of 17)	intron (NM_001033654, intron 4 of 17)	12375.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	0.0	4.5	0.0	0.0	0.0	0.0
Merged-chr15-101509103-2	chr15	101508603	101509603	+	613.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16|LTR|ERVK	5287.0	NR_002872	574415.0	Mm.491077	NR_002872		Gm6042	EG574415|Kb32p|Krt89	type II keratin Kb32P	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96123114-2	chr9	96122614	96123614	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177352, intron 1 of 16)	intron (NM_177352, intron 1 of 16)	3685.0	NM_177352	235533.0	Mm.213651	NM_177352	ENSMUSG00000041440	Gk5	AV095337|C330018K18Rik|G630067D24Rik	glycerol kinase 5 (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108580687-2	chr8	108580187	108581187	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_077224, intron 1 of 1)	intron (NR_077224, intron 1 of 1)	3990.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153401933-2	chr2	153401433	153402433	+	613.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001039939, exon 12 of 12)	exon (NM_001039939, exon 12 of 12)	42546.0	NM_001001986	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34654420-2	chr17	34653920	34654920	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_017406, intron 17 of 17)	intron (NM_017406, intron 17 of 17)	7274.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	4.0	4.0	0.0	4.0	2.0	0.5
Merged-chr11-94673563-2	chr11	94673063	94674063	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145828, intron 1 of 10)	RSINE1|SINE|B4	3930.0	NM_145828	217119.0	Mm.100638	NM_145828	ENSMUSG00000020868	Xylt2	E030002B02Rik|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36635544-2	chr16	36635044	36636044	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	30533.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-15981759-2	chr7	15981259	15982259	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081418, intron 6 of 13)	intron (NM_001081418, intron 6 of 13)	-14224.0	NM_153068	259300.0	Mm.138215	NM_153068	ENSMUSG00000074364	Ehd2	BC027084|C130052H20Rik	EH-domain containing 2	protein-coding	1.0	0.0	5.0	1.0	0.0	5.0
Merged-chr2-125671411-2	chr2	125670911	125671911	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199022, intron 4 of 11)	intron (NM_199022, intron 4 of 11)	-1689.0	NM_025613	58521.0	Mm.425101	NM_025613	ENSMUSG00000091337	Eid1	2610002K20Rik|Cri1|EID-1|ORF12|PNAS-22|PTD014	EP300 interacting inhibitor of differentiation 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97465700-2	chr6	97465230	97466230	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-6444.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	82.0	216.0	175.0	82.5	195.0	130.0
Merged-chr4-148037646-2	chr4	148037146	148038146	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011929, intron 2 of 22)	intron (NM_011929, intron 2 of 22)	1167.0	NM_011929	26372.0	Mm.89987	NM_011929	ENSMUSG00000029016	Clcn6	AI850629|Clc6	chloride channel, voltage-sensitive 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138228619-2	chr5	138228119	138229119	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013773, intron 1 of 5)	intron (NM_001013773, intron 1 of 5)	2715.0	NM_001013773	381680.0	Mm.156846	NM_001013773	ENSMUSG00000047592	Nxpe5	-	neurexophilin and PC-esterase domain family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116001861-2	chr6	116001361	116002361	+	613.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6856.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58259396-2	chr15	58258896	58259896	+	613.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44504.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77456658-2	chr9	77456158	77457158	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146048, intron 7 of 13)	intron (NM_001146048, intron 7 of 13)	-57242.0	NR_040378	70487.0	Mm.58958	NR_040378	ENSMUSG00000099170	5730403I07Rik	-	RIKEN cDNA 5730403I07 gene	ncRNA	1.5	0.0	0.0	2.0	1.5	0.5
Merged-chr5-135480734-2	chr5	135480234	135481234	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	AT_rich|Low_complexity|Low_complexity	64388.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-40954545-2	chr14	40954045	40955045	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	-6336.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-65995394-2	chr15	65994894	65995894	+	613.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_152923, exon 15 of 15)	exon (NM_152923, exon 15 of 15)	-18590.0	NM_001145096	654498.0	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-53925018-2	chr10	53924518	53925518	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 9 of 12)	intron (NM_008548, intron 9 of 12)	150778.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-78103298-2	chr13	78102798	78103798	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163420, intron 8 of 8)	intron (NM_001163420, intron 8 of 8)	78396.0	NM_029315	75507.0	Mm.443255	NM_029315	ENSMUSG00000093668	Pou5f2	1700013G10Rik|SPRM-1|Sprm1	POU domain class 5, transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-110890129-2	chr3	110889629	110890629	+	613.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-639130.0	NR_024139	99890.0	Mm.36115	NM_178891	ENSMUSG00000049300	Prmt6	AW124876|BB233495|Hrmt1l6	protein arginine N-methyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97947679-2	chr3	97947179	97948179	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033779, intron 1 of 1)	MIRb|SINE|MIR	17506.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21197333-2	chr5	21196833	21197833	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 3 of 26)	L1_Mus2|LINE|L1	11066.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-73358947-2	chr3	73358447	73359447	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040547, intron 7 of 7)	RMER19B|LTR|ERVK	122704.0	NR_040547	74693.0	Mm.292227	NR_040547	ENSMUSG00000102362	4930509J09Rik	-	RIKEN cDNA 4930509J09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-112243392-2	chr2	112242892	112243892	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207206, intron 7 of 13)	intron (NM_207206, intron 7 of 13)	3551.0	NM_207206	99010.0	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17793049-2	chr12	17792549	17793549	+	613.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	102240.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0.0	3.5	0.5	4.5	8.5	0.0
Merged-chr10-51482334-2	chr10	51481834	51482834	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008147, intron 4 of 8)	MTD|LTR|ERVL-MaLR	1722.0	NM_001291892	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101260436-2	chr15	101259936	101260936	+	613.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LFSINE_Vert|SINE|tRNA	-6410.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	1.5	8.0	4.0	0.0	2.0	8.0
Merged-chr11-107463588-2	chr11	107463088	107464088	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	7132.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	3.0	7.5	4.5	3.0	7.5	4.0
Merged-chr12-52478610-2	chr12	52478110	52479110	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_136881, intron 2 of 2)	intron (NR_136881, intron 2 of 2)	1999.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64019615-2	chr15	64019115	64020115	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144846, intron 1 of 11)	Lx10|LINE|L1	-21549.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167991099-2	chr2	167990599	167991599	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080708, intron 12 of 21)	intron (NM_001080708, intron 12 of 21)	19494.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150487084-2	chr4	150486584	150487584	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 7 of 22)	intron (NM_001085492, intron 7 of 22)	165090.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.0	0.0	1.5	4.0	11.5	6.5
Merged-chr7-66106383-2	chr7	66105883	66106883	+	613.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3132.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-46317920-2	chr16	46317420	46318420	+	613.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-162843.0	NM_001304528	11615.0	Mm.330692	NM_001304528	ENSMUSG00000048087	Gm4737	AL024110|EG11615	predicted gene 4737	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr2-51014836-2	chr2	51014336	51015336	+	613.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105152.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160864272-3	chr2	160863780	160864780	+	613.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177263, intron 1 of 3)	intron (NM_177263, intron 1 of 3)	8710.0	NM_177263	320799.0	Mm.436734	NM_177263	ENSMUSG00000035877	Zhx3	1810059C13Rik|4932418O04Rik|9530010N21Rik|Tix1|mKIAA0395	zinc fingers and homeoboxes 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84650554-2	chr8	84650054	84651054	+	613.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12298.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.0	0.0	0.5	4.0	3.0	2.5
Merged-chr2-80667646-2	chr2	80667153	80668153	+	613.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR50|LTR|ERVL	28389.0	NM_001190179	69482.0	Mm.29200	NM_027091	ENSMUSG00000026999	Nup35	2310006I24Rik|35kDa|5330402E05Rik|MP44|NO44	nucleoporin 35	protein-coding	0.0	0.5	1.5	2.0	0.0	0.5
Merged-chr7-122137918-2	chr7	122137418	122138418	+	613.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_021608, intron 3 of 5)	ID_B1|SINE|B4	4877.0	NM_021608	59288.0	Mm.478285	NM_021608	ENSMUSG00000030868	Dctn5	4930427E12Rik|C78178|b2b315Clo	dynactin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34483141-2	chr1	34482641	34483641	+	613.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-15271.0	NM_009355	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-34302267-2	chr16	34301767	34302767	+	613.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 9 of 59)	intron (NM_177357, intron 9 of 59)	211760.0	NM_001164268	545156.0	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120094167-3	chr2	120093682	120094682	+	613.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 5 of 5)	intron (NM_133838, intron 5 of 5)	60393.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-30771293-3	chr10	30770771	30771771	+	613.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 2 of 14)	intron (NM_001358842, intron 2 of 14)	32055.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-53001316-3	chr2	53000807	53001807	+	613.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	MER119|DNA|hAT-Charlie	143439.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-77513665-3	chr1	77513124	77514124	+	613.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007936, intron 1 of 17)	intron (NM_007936, intron 1 of 17)	1464.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	0.0	0.0	0.0	0.0	0.0	3.5
Merged-chr2-152295892-2	chr2	152295392	152296392	+	613.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_024196, intron 1 of 7)	B1_Mur2|SINE|Alu	2020.0	NM_024196	67231.0	Mm.288733	NM_024196	ENSMUSG00000027465	Tbc1d20	1110028I04Rik|2810442O16Rik|AI414693|bs	TBC1 domain family, member 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-63702563-2	chr18	63702063	63703063	+	613.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-6132.0	NM_001360837	104082.0	Mm.30850	NM_001014981	ENSMUSG00000040560	Wdr7	AI462727|TRAG|mKIAA0541	WD repeat domain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26963542-2	chr2	26963042	26964042	+	613.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_207234, intron 1 of 7)	intron (NM_207234, intron 1 of 7)	844.0	NM_207234	227656.0	Mm.291874	NM_207234	ENSMUSG00000052406	Rexo4	Gm111|Rex4|Xpmc2h	REX4, 3'-5' exonuclease	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-50741552-3	chr2	50741061	50742061	+	613.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-168123.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103008732-2	chr11	103008232	103009232	+	613.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026551, intron 1 of 4)	ID_B1|SINE|B4	8415.0	NM_026551	68087.0	Mm.277449	NM_026551	ENSMUSG00000020935	Dcakd	3010024O21Rik|6720485C15Rik|AI849483	dephospho-CoA kinase domain containing	protein-coding	1.0	0.0	1.5	3.5	1.5	4.5
Merged-chr10-80855955-2	chr10	80855455	80856455	+	613.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025349)	promoter-TSS (NM_025349)	680.0	NM_175195	73218.0	Mm.3285	NM_175195	ENSMUSG00000035206	Sppl2b	3110056O03Rik|AW550292|PSL1	signal peptide peptidase like 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114876207-2	chr6	114875707	114876707	+	613.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 3 of 5)	intron (NM_001356371, intron 3 of 5)	45614.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-192190686-2	chr1	192190159	192191159	+	613.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010600)	promoter-TSS (NM_010600)	-118.0	NM_001038607	16510.0	Mm.4489	NM_010600	ENSMUSG00000058248	Kcnh1	EAG1|Kv10.1|M-eag	potassium voltage-gated channel, subfamily H (eag-related), member 1	protein-coding	3.0	0.0	2.0	0.0	5.0	1.0
Merged-chr19-43724950-1	chr19	43724450	43725450	+	613.0	f1_balb.idr	intron (NM_053103, intron 9 of 12)	Lx2A1|LINE|L1	28050.0	NM_144874	226139.0	Mm.248237	NM_144874	ENSMUSG00000040018	Cox15	2900026G05Rik	cytochrome c oxidase assembly protein 15	protein-coding	0.5	1.0	0.0	11.0	0.0	1.5
Merged-chr1-152522996-2	chr1	152522496	152523496	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 16 of 17)	intron (NM_016846, intron 16 of 17)	102221.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135268055-2	chr4	135267555	135268555	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	B1F|SINE|Alu	4705.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-82462300-2	chr16	82461800	82462800	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	1261603.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75508508-1	chr18	75508008	75509008	+	613.0	f1_c57bl6.idr	intron (NM_201354, intron 9 of 11)	intron (NM_201354, intron 9 of 11)	-6137.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	0.5	0.0	0.5	0.0	12.0	1.5
Merged-chr7-104216383-1	chr7	104215883	104216883	+	613.0	f0_balb.idr	Intergenic	Intergenic	-2412.0	NM_001013616	94088.0	Mm.274843	NM_001013616	ENSMUSG00000072244	Trim6	C430046K18Rik|D7Ertd684e	tripartite motif-containing 6	protein-coding	0.0	8.5	1.0	0.0	0.0	1.0
Merged-chr3-133546503-1	chr3	133546003	133547003	+	613.0	f0_c57.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-2113.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-89452050-2	chr1	89451550	89452550	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-2761.0	NM_178119	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8850324-2	chr10	8849824	8850824	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	35746.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	20.0	42.0	14.0	10.0	44.5	24.0
Merged-chr12-25299256-1	chr12	25298756	25299756	+	613.0	f1_c57bl6.idr	Intergenic	Intergenic	170082.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	15.5	4.5	0.5	2.5	0.0	2.5
Merged-chr8-57485231-1	chr8	57484731	57485731	+	613.0	f0_balb.idr	intron (NM_021788, intron 2 of 3)	intron (NM_021788, intron 2 of 3)	2629.0	NM_021788	60406.0	Mm.118	NM_021788	ENSMUSG00000031609	Sap30	30kDa	sin3 associated polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106017310-1	chr8	106016810	106017810	+	613.0	f0_balb.idr	intron (NM_001301176, intron 2 of 14)	intron (NM_001301176, intron 2 of 14)	-5824.0	NM_028038	71986.0	Mm.307515	NM_028038	ENSMUSG00000045538	Ddx28	2410004K13Rik|AI449652|Mddx28	DEAD (Asp-Glu-Ala-Asp) box polypeptide 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105649542-2	chr5	105649042	105650042	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50427.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	26.5	28.0	38.0	32.0	24.0	21.5
Merged-chr2-132106213-2	chr2	132105713	132106713	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	38895.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76417438-2	chr14	76416938	76417938	+	613.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001310646, exon 3 of 5)	exon (NM_001310646, exon 3 of 5)	1617.0	NM_207652	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0.0	1.5	2.0	0.0	2.5	1.0
Merged-chr7-100489687-2	chr7	100489187	100490187	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3671.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4562090-2	chr2	4561590	4562590	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 1 of 11)	intron (NM_001177844, intron 1 of 11)	2336.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36671504-2	chr18	36671004	36672004	+	613.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357512, exon 12 of 12)	exon (NM_001357512, exon 12 of 12)	-1193.0	NM_025291	24068.0	Mm.29058	NM_025291	ENSMUSG00000006050	Sra1	AA959952|Sra|Srap|Straa1|Strra1	steroid receptor RNA activator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97697777-2	chr11	97697277	97698277	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163308, intron 1 of 9)	intron (NM_001163308, intron 1 of 9)	1607.0	NM_001163307	22658.0	Mm.2418	NM_009545	ENSMUSG00000018537	Pcgf2	Mel18|Rnf110|Zfp144|mel-18	polycomb group ring finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-33342252-2	chr12	33341752	33342752	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033436, intron 3 of 7)	intron (NM_001033436, intron 3 of 7)	39737.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-39652441-2	chr8	39651941	39652941	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9763.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	21.5	49.5	12.5	21.0	39.5	33.5
Merged-chr10-78472598-2	chr10	78472098	78473098	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7650.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52645808-2	chr13	52645308	52646308	+	613.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001198977, exon 14 of 14)	3' UTR (NM_001198977, exon 14 of 14)	48926.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76182986-2	chr14	76182486	76183486	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-68476.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96821662-1	chr15	96821162	96822162	+	613.0	f0_balb.idr	Intergenic	L1M2|LINE|L1	-121934.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133019041-2	chr4	133018541	133019541	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146155, intron 2 of 6)	IMPB_01|Satellite|Satellite	7535.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29579914-2	chr11	29579447	29580447	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-31907.0	NM_001033865	78294.0	Mm.180003	NM_024277	ENSMUSG00000020460	Rps27a	0610006J14Rik|Uba52|Ubb|Ubc	ribosomal protein S27A	protein-coding	0.0	1.5	1.5	0.0	3.0	3.0
Merged-chr14-20675540-2	chr14	20675040	20676040	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172596, intron 1 of 22)	intron (NM_172596, intron 1 of 22)	1219.0	NM_001168273	218811.0	Mm.173119	NM_172596	ENSMUSG00000039367	Sec24c	2610204K03Rik|mKIAA0079	Sec24 related gene family, member C (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-113705435-2	chr9	113704935	113705935	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164678, intron 1 of 17)	intron (NM_001164678, intron 1 of 17)	2824.0	NM_001164678	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-101174854-3	chr2	101174327	101175327	+	613.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCa|LINE|L1	-449921.0	NM_009020	19374.0	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116123520-2	chr3	116123020	116124020	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011693, intron 4 of 8)	L1MA7|LINE|L1	6168.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	14.5	52.5	21.5	14.0	53.0	21.5
Merged-chr2-29671296-2	chr2	29670796	29671796	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	51576.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-48217238-1	chr10	48216738	48217738	+	613.0	f1_balb.idr	Intergenic	Intergenic	1570699.0	NM_001358866	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	0.0	0.0	0.0	0.0	9.0	0.0
Merged-chr17-34615504-2	chr17	34615004	34616004	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_152922, intron 1 of 8)	intron (NM_152922, intron 1 of 8)	467.0	NM_152922	81701.0	Mm.231343	NM_152922	ENSMUSG00000015467	Egfl8	Ng3	EGF-like domain 8	protein-coding	1.5	0.0	0.5	1.5	0.0	0.5
Merged-chr8-126538249-2	chr8	126537749	126538749	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55187.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	1.5	0.0
Merged-chr13-53119972-1	chr13	53119472	53120472	+	613.0	f1_balb.idr	intron (NM_013846, intron 5 of 8)	intron (NM_013846, intron 5 of 8)	-138933.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	0.0	0.0	0.0	0.0	1.5	0.0
Merged-chr4-120055242-2	chr4	120054742	120055742	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-105964.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46246021-2	chr17	46245521	46246521	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009085, intron 3 of 8)	intron (NM_009085, intron 3 of 8)	2024.0	NM_009085	20016.0	Mm.3458	NM_009085	ENSMUSG00000067148	Polr1c	40kDa|AA409007|AA959927|AL024089|Polr1e|RPA40|Rpo1-1	polymerase (RNA) I polypeptide C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61933084-2	chr11	61932584	61933584	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	-2827.0	NM_019921	56697.0	Mm.274404	NM_019921	ENSMUSG00000047804	Akap10	1500031L16Rik|B130049N18Rik|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-104069796-3	chr12	104069302	104070302	+	613.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8157.0	NR_002861	321018.0	Mm.297023	NR_002861		Serpina4-ps1	KALps|Klst	serine (or cysteine) peptidase inhibitor, clade A, member 4, pseudogene 1	pseudo	0.0	3.5	4.0	3.5	0.0	1.0
Merged-chr4-87668645-1	chr4	87668145	87669145	+	613.0	f0_balb.idr	Intergenic	Intergenic	137678.0	NM_001286158	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-45831723-2	chr11	45831223	45832223	+	613.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045876, exon 2 of 4)	non-coding (NR_045876, exon 2 of 4)	-20241.0	NM_001346760	216705.0	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr1-138248813-2	chr1	138248313	138249313	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-24925.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79738525-2	chr10	79738025	79739025	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172551, intron 11 of 20)	intron (NM_172551, intron 11 of 20)	8056.0	NM_172551	216151.0	Mm.39001	NM_172551	ENSMUSG00000020329	Polrmt	1110018N15Rik|4932416K13	polymerase (RNA) mitochondrial (DNA directed)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34004540-1	chr1	34004040	34005040	+	613.0	f0_balb.idr	intron (NM_001276764, intron 3 of 102)	intron (NM_001276764, intron 3 of 102)	-7285.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24453912-1	chr17	24453412	24454412	+	613.0	f1_balb.idr	intron (NR_125990, intron 1 of 13)	URR1A|DNA|hAT-Charlie	1480.0	NM_001301784	13560.0	Mm.163132	NM_007893	ENSMUSG00000024137	E4f1	p120E4F|phi-AP3	E4F transcription factor 1	protein-coding	6.0	11.0	13.5	6.0	7.5	10.5
Merged-chr6-29276866-3	chr6	29276310	29277310	+	613.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4184.0	NM_023516	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5640558-2	chr2	5640058	5641058	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	B4A|SINE|B4	35488.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120752113-1	chr8	120751613	120752613	+	613.0	f0_balb.idr	intron (NM_001301811, intron 6 of 8)	intron (NM_001301811, intron 6 of 8)	13474.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-63999246-2	chr15	63998746	63999746	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144846, intron 1 of 11)	intron (NM_144846, intron 1 of 11)	-1180.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86502773-2	chr1	86502273	86503273	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23784.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5664605-2	chr19	5664105	5665105	+	613.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164482)	promoter-TSS (NM_001164482)	-898.0	NM_001164480	20469.0	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60527330-1	chr18	60526830	60527830	+	613.0	f1_c57bl6.idr	intron (NM_026302, intron 1 of 12)	ID_B1|SINE|B4	1176.0	NM_001357462	67665.0	Mm.272801	NM_026302	ENSMUSG00000024603	Dctn4	1110001K06Rik|4930547K17Rik|C130039E17Rik|p62	dynactin 4	protein-coding	20.5	71.0	34.0	20.5	66.5	38.0
Merged-chr12-32464611-2	chr12	32464111	32465111	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	85822.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170103949-1	chr2	170103449	170104449	+	613.0	f1_c57bl6.idr	Intergenic	Intergenic	27271.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	3.0	2.0	4.5	0.0	0.0	1.5
Merged-chr6-66893078-1	chr6	66892578	66893578	+	613.0	f0_balb.idr	Intergenic	Intergenic	-3319.0	NM_001177559	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24466233-2	chr13	24465733	24466733	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111110, intron 14 of 16)	intron (NM_001111110, intron 14 of 16)	51111.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-126660431-1	chr3	126659931	126660931	+	613.0	f0_balb.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	63480.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	14.0	10.0	7.5	20.0	18.5	19.0
Merged-chr17-72839407-2	chr17	72838907	72839907	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357370, intron 1 of 2)	intron (NM_001357370, intron 1 of 2)	1359.0	NM_001357371	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	4.5	6.5	4.5	6.0	11.0	7.5
Merged-chr10-22747798-1	chr10	22747298	22748298	+	613.0	f0_balb.idr	Intergenic	Intergenic	-16351.0	NM_011603	237336.0	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-103175244-1	chr9	103174744	103175744	+	613.0	f0_c57.idr	intron (NM_173781, intron 7 of 7)	intron (NM_173781, intron 7 of 7)	26821.0	NM_009275	20818.0	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	1.0	0.0	1.0	0.0	4.0	0.5
Merged-chr2-76602236-2	chr2	76601736	76602736	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR34B_MM|LTR|ERVK	45758.0	NM_011871	23992.0	Mm.277250	NM_011871	ENSMUSG00000002731	Prkra	AV120107|PRK|Pact|RAX|lear	protein kinase, interferon inducible double stranded RNA dependent activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3056023-2	chr4	3055523	3056523	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAGTA)n|Simple_repeat|Simple_repeat	-116060.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53114035-2	chr4	53113535	53114535	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	45860.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-19923143-2	chr11	19922643	19923643	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1299.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	1.5	0.0	0.0	3.0	0.0	0.0
Merged-chr15-59820563-1	chr15	59820063	59821063	+	613.0	f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-25604.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.0	25.5	47.5	4.5	14.5	9.5
Merged-chr11-58331587-2	chr11	58331080	58332080	+	613.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001161338, exon 2 of 7)	5' UTR (NM_001161338, exon 2 of 7)	790.0	NM_001308168	79566.0	Mm.290534	NM_024480	ENSMUSG00000013646	Sh3bp5l	2310074E09Rik|BC003251|mKIAA1720	SH3 binding domain protein 5 like	protein-coding	11.5	19.5	23.0	5.5	31.0	15.5
Merged-chr4-135943982-2	chr4	135943482	135944482	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2466.0	NM_008254	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-94505800-2	chr9	94505300	94506300	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32281.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	23.5	22.5	1.0	5.0	8.5	2.5
Merged-chr6-116282800-2	chr6	116282300	116283300	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290339, intron 2 of 6)	B2_Mm1t|SINE|B2	16268.0	NM_001290339	67492.0	Mm.272772	NM_001081317	ENSMUSG00000042213	Zfand4	Anubl1	zinc finger, AN1-type domain 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122390891-2	chr5	122390391	122391391	+	613.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019824)	promoter-TSS (NM_019824)	-987.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54847751-2	chr18	54847251	54848251	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	142429.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110868518-1	chr11	110868018	110869018	+	613.0	f0_balb.idr	Intergenic	Intergenic	-99515.0	NM_010604	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56731062-2	chr19	56730562	56731562	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8690.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	4.5	5.0	0.0	4.5	5.0
Merged-chr4-156201805-2	chr4	156201305	156202305	+	613.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015783)	promoter-TSS (NM_015783)	-987.0	NM_015783	100038882.0	Mm.4950	NM_015783	ENSMUSG00000035692	Isg15	G1p2|IGI15|IP17|Irfp|UCRP	ISG15 ubiquitin-like modifier	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-141369217-2	chr3	141368717	141369717	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96347.0	NM_001293561	22253.0	Mm.24430	NM_009472	ENSMUSG00000059921	Unc5c	B130051O18Rik|Unc5h3|rcm	unc-5 netrin receptor C	protein-coding	0.0	3.5	0.0	0.0	0.0	0.0
Merged-chr4-147942448-2	chr4	147941948	147942948	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029841, intron 1 of 2)	intron (NM_029841, intron 1 of 2)	1553.0	NM_029841	77034.0	Mm.183076	NM_029841	ENSMUSG00000044496	2510039O18Rik	Kiaa2013	RIKEN cDNA 2510039O18 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81130891-2	chr10	81130391	81131391	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5380.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3651165-1	chr4	3650665	3651665	+	613.0	f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-5341.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	10.0	11.0	6.5	6.0	3.5	4.5
Merged-chr18-82917096-2	chr18	82916596	82917596	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177464, intron 1 of 5)	intron (NM_001177464, intron 1 of 5)	2464.0	NM_001177464	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-106809486-1	chr3	106808986	106809986	+	613.0	f0_balb.idr	Intergenic	L1M2|LINE|L1	13071.0	NM_146489	258482.0	Mm.377527	NM_146489	ENSMUSG00000043529	Olfr266	MOR122-2	olfactory receptor 266	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125503124-2	chr8	125502624	125503624	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 2 of 21)	intron (NM_001357372, intron 2 of 21)	-10291.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	11.0	8.5	19.5	14.5	11.5	9.5
Merged-chr11-106443759-2	chr11	106443259	106444259	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 2 of 21)	intron (NM_023913, intron 2 of 21)	44037.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-60513802-1	chr14	60513302	60514302	+	613.0	f1_c57bl6.idr	Intergenic	Intergenic	-120903.0	NM_001033272	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	0.0	1.5	0.0	1.0	0.0	3.5
Merged-chr17-3037628-2	chr17	3037128	3038128	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46555.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-47077824-2	chr3	47077324	47078324	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-177042.0	NR_105800	102465199.0		NR_105800	ENSMUSG00000098417	Mir6379	Gm27730|mmu-mir-6379	microRNA 6379	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62397739-1	chr4	62397239	62398239	+	613.0	f0_balb.idr	intron (NM_139291, intron 3 of 3)	intron (NM_139291, intron 3 of 3)	10884.0	NM_139291	66440.0	Mm.109930	NM_139291	ENSMUSG00000066149	Cdc26	2010012C09Rik	cell division cycle 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-52006451-1	chr14	52005951	52006951	+	613.0	f1_c57bl6.idr	TTS (NM_198249)	TTS (NM_198249)	8107.0	NM_001253695	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	0.0	0.0	3.0	0.0	0.0	0.0
Merged-chr8-105533504-1	chr8	105533004	105534004	+	613.0	f0_balb.idr	intron (NM_013477, intron 2 of 7)	intron (NM_013477, intron 2 of 7)	14758.0	NM_008289	15484.0	Mm.5079	NM_008289	ENSMUSG00000031891	Hsd11b2	11HSD2	hydroxysteroid 11-beta dehydrogenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-21010048-2	chr17	21009548	21010548	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145483, intron 1 of 4)	intron (NM_145483, intron 1 of 4)	1107.0	NM_145483	224585.0	Mm.296036	NM_145483	ENSMUSG00000067942	Zfp160	6720480D16Rik|F11|HKr18|HZF5|KR18|mKIAA1611|mszf47	zinc finger protein 160	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-34465025-3	chr4	34464537	34465537	+	612.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-85578.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-125224762-3	chr10	125224271	125225271	+	612.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001358915, exon 6 of 6)	3' UTR (NM_001358915, exon 6 of 6)	84045.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-70702455-3	chr2	70701921	70702921	+	612.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40912.0	NM_027352	70231.0	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60679102-2	chr13	60678602	60679602	+	612.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	76891.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	3.5	4.5	3.5	7.0	8.5	0.5
Merged-chr17-15068344-3	chr17	15067855	15068855	+	612.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15296.0	NM_001034891	381062.0	Mm.393767	NM_183133	ENSMUSG00000036552	Ermard	2210404J11Rik|2410011O22Rik|AI448938	ER membrane associated RNA degradation	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155462704-3	chr1	155462200	155463200	+	612.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45256.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5198113-2	chr17	5197613	5198613	+	612.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	203039.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-145628040-4	chr3	145627561	145628561	+	612.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21924.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64872198-2	chr7	64871698	64872698	+	612.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_023239, exon 1 of 1)	exon (NM_023239, exon 1 of 1)	842.0	NM_023239	66647.0	Mm.19944	NM_023239	ENSMUSG00000070520	Nsmce3	5730494G16Rik|AI642138|BB044375|HCA4|Mageg1|Ndnl2|mage-g1	NSE3 homolog, SMC5-SMC6 complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-70310917-2	chr16	70310417	70311417	+	612.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-3032.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	2.0	6.0	4.5	0.0	2.0	2.5
Merged-chr9-106366370-2	chr9	106365871	106366871	+	612.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2261.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	7.0	21.0	26.0	4.5	24.0	30.5
Merged-chr6-83696873-4	chr6	83696375	83697375	+	612.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_002871, intron 3 of 5)	intron (NR_002871, intron 3 of 5)	13950.0	NR_075094	574519.0	Mm.487605	NR_002871	ENSMUSG00000085794	Vax2os	Vas2os|Vax2os1|Vax2os2	ventral anterior homeobox 2, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112274023-2	chr5	112273523	112274523	+	612.6999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2668.0	NM_001326590	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55806930-3	chr19	55806433	55807433	+	612.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	65123.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	11.0	7.0	2.0	6.0	41.0	5.0
Merged-chr9-119247125-2	chr9	119246625	119247625	+	612.666687	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045693, exon 14 of 19)	non-coding (NR_045693, exon 14 of 19)	-15433.0	NR_033303	109280.0	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	1.5	0.0	3.0	2.5	3.5	2.5
Merged-chr11-115670736-3	chr11	115670241	115671241	+	612.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	28793.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-46106837-2	chr10	46106337	46107337	+	612.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-137911.0	NR_028274	100302593.0		NR_028274	ENSMUSG00000095118	Snord14d	Gm23710	small nucleolar RNA, C/D box 14D	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29211209-2	chr6	29210709	29211709	+	612.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302934, intron 2 of 14)	intron (NM_001302934, intron 2 of 14)	1088.0	NM_011829	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26201484-2	chr17	26200984	26201984	+	612.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008113)	promoter-TSS (NM_008113)	-134.0	NM_008113	14570.0	Mm.1383	NM_008113	ENSMUSG00000073433	Arhgdig	Gdi5|RIP2|Rho-GDI-3|Rho-GDI2	Rho GDP dissociation inhibitor (GDI) gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31427042-2	chr14	31426542	31427542	+	612.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	ID_B1|SINE|B4	9058.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46312503-2	chr18	46311988	46312988	+	612.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160399)	promoter-TSS (NM_001160399)	-560.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	0.0	6.5	2.5	0.0	6.5	6.0
Merged-chr2-150755253-4	chr2	150754754	150755754	+	612.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355068, intron 2 of 13)	intron (NM_001355068, intron 2 of 13)	6173.0	NM_172117	12497.0	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-85457609-2	chr6	85457109	85458109	+	612.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_007638, intron 1 of 11)	ORR1D1|LTR|ERVL-MaLR	-5639.0	NR_028081	73327.0	Mm.379221	NM_028505	ENSMUSG00000030008	Pradc1	1700040I03Rik|Pap21	protease-associated domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59868194-2	chr15	59867693	59868693	+	612.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-73234.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.0	0.0	0.0	4.5	0.5	5.0
Merged-chr11-60803887-3	chr11	60803400	60804400	+	612.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009171, intron 3 of 11)	PB1|SINE|Alu	7365.0	NM_009171	20425.0	Mm.364956	NM_009171	ENSMUSG00000020534	Shmt1	AI324848|AI385541|C81125|Shmt|mshmt|mshmt1|mshmt2	serine hydroxymethyltransferase 1 (soluble)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72316497-3	chr8	72316027	72317027	+	612.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2535.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	2.0	12.5	6.0	14.5	52.5	20.0
Merged-chr7-88259071-2	chr7	88258571	88259571	+	612.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-19014.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-45858490-2	chr5	45857990	45858990	+	612.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163073)	promoter-TSS (NM_001163073)	-950.0	NM_001359873	209707.0	Mm.71498	NM_172153	ENSMUSG00000015882	Lcorl	Mlr1	ligand dependent nuclear receptor corepressor-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116422777-2	chr11	116422277	116423277	+	612.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-9745.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	10.0	17.0	27.0	5.0	11.0	4.5
Merged-chr2-27671424-2	chr2	27670924	27671924	+	612.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5777.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9498280-2	chr18	9497780	9498780	+	612.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48126.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0.0	3.0	0.0	0.5	9.0	0.0
Merged-chr2-59200821-2	chr2	59200321	59201321	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	39971.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79527086-2	chr15	79526586	79527586	+	612.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_152806)	TTS (NM_152806)	5831.0	NM_152806	67040.0	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	0.0	0.5	1.5	6.0	3.5	0.5
Merged-chr17-74429938-2	chr17	74429438	74430438	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 8 of 8)	intron (NM_001033367, intron 8 of 8)	29170.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84889085-2	chr18	84888585	84889585	+	612.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB7_1-LTR_MM|LTR|ERVK	37747.0	NM_001348159	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32696723-2	chr16	32696223	32697223	+	612.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	23569.0	NM_001289443	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-115635137-2	chr13	115634637	115635637	+	612.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-533173.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	0.0	0.0	0.0	0.0	1.5	0.0
Merged-chr16-83133090-2	chr16	83132590	83133590	+	612.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-1238053.0	NR_040567	75247.0	Mm.417813	NR_040567		4930553E22Rik	-	RIKEN cDNA 4930553E22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4628076-2	chr16	4627576	4628576	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030205, intron 26 of 27)	intron (NM_030205, intron 26 of 27)	-3130.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52957191-2	chr2	52956691	52957691	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	B1_Mm|SINE|Alu	99323.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-3283096-2	chr18	3282596	3283596	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013498, intron 4 of 6)	intron (NM_013498, intron 4 of 6)	-1349.0	NM_001110855	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86652113-2	chr4	86651606	86652606	+	612.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER91B|DNA|hAT-Tip100	17953.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	1.0	3.0	0.5	0.5	1.5	6.5
Merged-chr12-79580104-2	chr12	79579604	79580604	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	282753.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-110446830-1	chr8	110446330	110447330	+	612.5	f0_c57.idr	intron (NM_172916, intron 20 of 86)	MTD|LTR|ERVL-MaLR	55526.0	NR_105058	100861869.0	Mm.84499	NR_105058		Gm21283	-	predicted gene, 21283	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99543719-2	chr5	99543219	99544219	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	MLT1K|LTR|ERVL-MaLR	185341.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	4.5
Merged-chr3-31082280-2	chr3	31081780	31082780	+	612.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12778.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22812116-2	chr8	22811616	22812616	+	612.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6462.0	NM_001122820	64933.0	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	0.0	0.0	2.0	0.0	0.0	2.0
Merged-chr15-31602984-2	chr15	31602484	31603484	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026546, intron 1 of 4)	intron (NM_026546, intron 1 of 4)	868.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69430113-2	chr11	69429613	69430613	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 76 of 85)	B2_Mm2|SINE|B2	-16438.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98812989-2	chr7	98812489	98813489	+	612.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22123.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97151307-2	chr6	97150807	97151807	+	612.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081111)	TTS (NM_001081111)	-2424.0	NM_175313	101351.0	Mm.116802	NM_175313	ENSMUSG00000035245	Eogt	A130022J15Rik|AI447490|AW214473|AW259391|Aer61	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81503396-2	chr10	81502896	81503896	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010304, intron 6 of 6)	intron (NM_010304, intron 6 of 6)	-3259.0	NM_010102	13611.0	Mm.33065	NM_010102	ENSMUSG00000044199	S1pr4	Edg6|Lpc1|S1p4	sphingosine-1-phosphate receptor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157098202-2	chr2	157097702	157098702	+	612.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018851, exon 16 of 16)	3' UTR (NM_018851, exon 16 of 16)	11147.0	NM_001177439	383766.0	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101986933-2	chr11	101986433	101987433	+	612.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029287)	promoter-TSS (NM_029287)	-123.0	NM_029287	75437.0	Mm.108632	NM_029287	ENSMUSG00000010841	1700006E09Rik	Cfap97d1	RIKEN cDNA 1700006E09 gene	protein-coding	0.0	1.0	1.0	1.0	0.0	2.0
Merged-chr8-104236548-2	chr8	104236048	104237048	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045642, intron 5 of 8)	intron (NR_045642, intron 5 of 8)	12010.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141716586-2	chr4	141716086	141717086	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001017966, intron 1 of 9)	intron (NM_001017966, intron 1 of 9)	6833.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	0.0	8.0	2.5	2.0	20.0	2.0
Merged-chr14-66188562-2	chr14	66188062	66189062	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 4 of 30)	B2_Mm2|SINE|B2	25262.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-64063753-2	chr14	64063253	64064253	+	612.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21657.0	NM_001081063	71037.0	Mm.19977	NM_001081063	ENSMUSG00000034623	Prss55	4933401F05Rik	protease, serine 55	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-73491018-2	chr3	73490518	73491518	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040557, intron 2 of 4)	MTA_Mm-int|LTR|ERVL-MaLR	-9367.0	NR_040547	74693.0	Mm.292227	NR_040547	ENSMUSG00000102362	4930509J09Rik	-	RIKEN cDNA 4930509J09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120699411-2	chr11	120698911	120699911	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026877, intron 7 of 15)	intron (NM_026877, intron 7 of 15)	14356.0	NM_016665	20892.0	Mm.259716	NM_016665	ENSMUSG00000025144	Cenpx	Stra13	centromere protein X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64039284-2	chr5	64038784	64039784	+	612.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5689.0	NR_045384	74757.0	Mm.159329	NR_045384	ENSMUSG00000106219	5830416I19Rik	-	RIKEN cDNA 5830416I19 gene	ncRNA	3.0	0.0	1.0	3.5	2.0	0.0
Merged-chr4-19699161-2	chr4	19698661	19699661	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_074090, intron 1 of 24)	intron (NR_074090, intron 1 of 24)	9843.0	NM_177327	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-37651783-1	chr16	37651283	37652283	+	612.5	f0_balb.idr	intron (NM_026610, intron 1 of 2)	intron (NM_026610, intron 1 of 2)	2585.0	NM_026610	68194.0	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45908589-2	chr7	45908089	45909089	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144801, intron 5 of 7)	intron (NM_144801, intron 5 of 7)	11520.0	NM_144801	70209.0	Mm.163766	NM_144801	ENSMUSG00000002781	Tmem143	2310076O21Rik|AI481604	transmembrane protein 143	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129739002-2	chr4	129738502	129739502	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011317, intron 1 of 8)	intron (NM_011317, intron 1 of 8)	3301.0	NM_011317	20218.0	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	1.5	5.0	1.5	0.0	5.0	1.5
Merged-chr19-29371383-2	chr19	29370883	29371883	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 1 of 6)	intron (NM_021893, intron 1 of 6)	3945.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5014344-2	chr17	5013844	5014844	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 1 of 19)	intron (NM_001085355, intron 1 of 19)	19270.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181584191-2	chr2	181583691	181584691	+	612.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164597, exon 17 of 17)	3' UTR (NM_001164597, exon 17 of 17)	-2218.0	NM_026765	68556.0	Mm.232400	NM_026765	ENSMUSG00000089917	Uckl1	1110007H10Rik|Urkl1	uridine-cytidine kinase 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51243039-2	chr14	51242571	51243571	+	612.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13041.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	3.0	2.5	9.0	22.5	15.0	11.5
Merged-chr1-165195558-2	chr1	165195058	165196058	+	612.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1120.0	NR_151712	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31444705-2	chr3	31444205	31445205	+	612.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-134386.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55016163-2	chr13	55015663	55016663	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001206392, intron 1 of 17)	intron (NM_001206392, intron 1 of 17)	4656.0	NM_001206390	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	32.5	52.0	22.5	6.5	40.0	49.5
Merged-chr10-59431133-2	chr10	59430633	59431633	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010959, intron 4 of 8)	intron (NM_010959, intron 4 of 8)	10646.0	NM_010959	18302.0	Mm.123013	NM_010959	ENSMUSG00000009654	Oit3	EF-9|LZP	oncoprotein induced transcript 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3803791-2	chr5	3803291	3804291	+	612.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289528)	promoter-TSS (NM_001289528)	610.0	NR_033173	79264.0	Mm.32368	NM_030675	ENSMUSG00000000600	Krit1	2010007K12Rik|A630036P20Rik|AA432855|AI450393|AI643869|BB155247|BB235701|Ccm1	KRIT1, ankyrin repeat containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28159663-2	chr7	28159163	28160163	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164655, intron 17 of 19)	intron (NM_001164655, intron 17 of 19)	-10085.0	NM_007991	14113.0	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69616363-2	chr11	69615863	69616863	+	612.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011367, exon 5 of 8)	exon (NM_011367, exon 5 of 8)	1542.0	NM_011367	20415.0	Mm.1431	NM_011367	ENSMUSG00000005202	Shbg	ABP	sex hormone binding globulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-91410545-2	chr13	91410045	91411045	+	612.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-22460.0	NR_045161	320297.0	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113865948-4	chr13	113865442	113866442	+	612.470825	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	71434.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102467345-2	chr12	102466853	102467853	+	612.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1781.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	10.0	9.5	2.0	5.5	24.0	3.0
Merged-chr9-118745609-2	chr9	118745113	118746113	+	612.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	RMER19C|LTR|ERVK	33921.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	22.5	5.0	6.5	3.5	5.0	2.0
Merged-chr14-84447150-2	chr14	84446650	84447650	+	612.375	f1_balb.idr|f1_c57bl6.idr	exon (NM_001013753, exon 1 of 4)	exon (NM_001013753, exon 1 of 4)	3587.0	NM_001013753	219228.0	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36302552-2	chr1	36302052	36303052	+	612.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5181.0	NM_001172206	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64367595-1	chr13	64367095	64368095	+	612.333313	f1_c57bl6.idr	intron (NM_009984, intron 4 of 7)	PB1D10|SINE|Alu	2925.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	6.0	8.5	11.5	4.0	19.0	1.5
Merged-chr15-41639057-1	chr15	41638557	41639557	+	612.333313	f0_balb.idr	intron (NR_152565, intron 2 of 17)	intron (NR_152565, intron 2 of 17)	-149938.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-7280080-3	chr7	7279560	7280560	+	612.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1771.0	NR_003555	76229.0	Mm.387947	NM_001113468	ENSMUSG00000095730	Vmn2r29	6430701C03Rik	vomeronasal 2, receptor 29	protein-coding	5.0	0.0	2.0	5.0	0.0	4.0
Merged-chr2-60215363-2	chr2	60214863	60215863	+	612.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_020575, intron 1 of 9)	intron (NM_020575, intron 1 of 9)	5427.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-75320452-2	chr1	75319952	75320952	+	612.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2815.0	NM_001110831	13437.0	Mm.24680	NM_016878	ENSMUSG00000026209	Dnpep	AA407814	aspartyl aminopeptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27288583-2	chr2	27288083	27289083	+	612.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 12 of 29)	intron (NR_133905, intron 12 of 29)	-41280.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35709164-2	chr8	35708616	35709616	+	612.25	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	117443.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	3.0	18.5	6.0	0.0	6.5	1.5
Merged-chr14-9330322-2	chr14	9329822	9330822	+	612.18335	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-553773.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26918139-2	chr2	26917639	26918639	+	612.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013678, intron 3 of 5)	intron (NM_013678, intron 3 of 5)	-1609.0	NM_013677	20930.0	Mm.347512	NM_013677	ENSMUSG00000015790	Surf1	0610010F23Rik|Surf-1	surfeit gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50681920-3	chr6	50681415	50682415	+	612.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27522.0	NM_021892	60531.0	Mm.157158	NM_021892	ENSMUSG00000029831	Npvf	Rfrp	neuropeptide VF precursor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-178507532-1	chr2	178507032	178508032	+	612.0	f0_balb.idr	Intergenic	Intergenic	77017.0	NM_198656	381409.0	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4053723-2	chr19	4053223	4054223	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	5724.0	NM_144869	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80680878-2	chr10	80680378	80681378	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-4585.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29939960-2	chr19	29939460	29940460	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360725, intron 2 of 8)	intron (NM_001360725, intron 2 of 8)	-5830.0	NM_001164724	77125.0	Mm.182359	NM_133775	ENSMUSG00000024810	Il33	9230117N10Rik|Il-33|Il1f11|NF-HEV	interleukin 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117107413-2	chr2	117106913	117107913	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13658.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109463325-2	chr8	109462825	109463825	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30702.0	NM_019938	56523.0	Mm.42166	NM_019938	ENSMUSG00000031727	Pmfbp1	1700016D22Rik|F77|Stap	polyamine modulated factor 1 binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67480379-2	chr7	67479879	67480879	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-107521.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4636081-2	chr16	4635581	4636581	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030205, intron 9 of 27)	intron (NM_030205, intron 9 of 27)	-3864.0	NM_139307	246154.0	Mm.482140	NM_139307	ENSMUSG00000039646	Vasn	2610528G05Rik|Atia|Slitl2	vasorin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66127289-1	chr9	66126789	66127789	+	612.0	f0_balb.idr	intron (NM_001359210, intron 1 of 3)	intron (NM_001359210, intron 1 of 3)	678.0	NM_026635	68250.0	Mm.27107	NM_026635	ENSMUSG00000032381	Fam96a	5730536A07Rik	family with sequence similarity 96, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-87909298-1	chr15	87908798	87909798	+	612.0	f0_balb.idr	Intergenic	Intergenic	-113355.0	NR_105817	102465209.0		NR_105817	ENSMUSG00000098938	Mir6393	Gm27424|mmu-mir-6393	microRNA 6393	ncRNA	1.5	0.0	2.0	1.0	0.0	4.5
Merged-chr9-101030279-2	chr9	101029785	101030785	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311149, intron 2 of 13)	intron (NM_001311149, intron 2 of 13)	4599.0	NM_001311149	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	3.5	8.0	3.0	0.5	18.5	0.5
Merged-chr1-184448228-2	chr1	184447728	184448728	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109463.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96720812-3	chr9	96720299	96721299	+	612.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359959)	promoter-TSS (NM_001359959)	-949.0	NM_001359959	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-14912888-2	chr3	14912388	14913388	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	26600.0	NM_009801	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134166645-2	chr5	134166145	134167145	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033572, intron 5 of 10)	intron (NM_033572, intron 5 of 10)	10122.0	NM_033572	94254.0	Mm.29508	NM_033572	ENSMUSG00000061979	Rcc1l	5730496C04Rik|AU019812|Wbscr16	reculator of chromosome condensation 1 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117794281-2	chr10	117793781	117794781	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1576.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-41029803-1	chr15	41029303	41030303	+	612.0	f0_balb.idr	intron (NM_001356998, intron 4 of 6)	intron (NM_001356998, intron 4 of 6)	-143898.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-52232799-2	chr11	52232299	52233299	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011543, intron 1 of 5)	intron (NM_011543, intron 1 of 5)	804.0	NM_011543	21402.0	Mm.42944	NM_011543	ENSMUSG00000036309	Skp1a	15kDa|2610043E24Rik|2610206H23Rik|EMC19|OCP-II|OCP2|SKP1|Tceb1l|p19A|p19Skp1	S-phase kinase-associated protein 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51325017-2	chr13	51324517	51325517	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83601.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-102451909-2	chr10	102451409	102452409	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38509.0	NM_024435	67405.0	Mm.64201	NM_024435	ENSMUSG00000019890	Nts	5033428E16Rik|NMN-125|NN|NT|NT/N|NTS1	neurotensin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-59183409-2	chr6	59182909	59183909	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-25461.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84772745-2	chr3	84772245	84773245	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-42832.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	35.0	75.5	67.0	28.5	61.0	43.0
Merged-chr8-117438233-2	chr8	117437733	117438733	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 10 of 20)	RLTR25B|LTR|ERVK	-14790.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132986666-1	chr4	132986166	132987166	+	612.0	f1_balb.idr	intron (NM_010208, intron 3 of 12)	IMPB_01|Satellite|Satellite	12571.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	12.5	3.0	8.0	7.0	0.5	9.5
Merged-chr13-110523219-1	chr13	110522719	110523719	+	612.0	f0_balb.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	128175.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0.0	2.0	1.0	1.0	6.5	0.0
Merged-chr13-10542912-1	chr13	10542412	10543412	+	612.0	f0_balb.idr	Intergenic	Intergenic	-182109.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126832111-1	chr7	126831611	126832611	+	612.0	f0_balb.idr	promoter-TSS (NM_183131)	promoter-TSS (NM_183131)	-615.0	NM_183131	78118.0	Mm.107753	NM_183131	ENSMUSG00000045989	4930451I11Rik	-	RIKEN cDNA 4930451I11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-22818224-1	chr14	22817724	22818724	+	612.0	f0_balb.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-275426.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35175193-2	chr2	35174693	35175693	+	612.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_012018, exon 40 of 44)	exon (NM_012018, exon 40 of 44)	25927.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11602001-2	chr4	11601501	11602501	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039556, intron 8 of 14)	intron (NM_001039556, intron 8 of 14)	22339.0	NM_001256142	100503583.0	Mm.249437	NM_001256142	ENSMUSG00000094595	Fsbp	-	fibrinogen silencer binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-87871603-1	chr4	87871103	87872103	+	612.0	f1_c57bl6.idr	intron (NM_027326, intron 4 of 10)	L1_Mus4|LINE|L1	-65280.0	NM_029931	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-66357961-2	chr8	66357461	66358461	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 4 of 7)	MTE2b-int|LTR|ERVL-MaLR	-28340.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77582636-2	chr10	77582136	77583136	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145925, intron 1 of 5)	intron (NM_145925, intron 1 of 5)	981.0	NM_145925	108705.0	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540|PBF	pituitary tumor-transforming 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85605350-2	chr12	85604850	85605850	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 1 of 3)	intron (NM_001205053, intron 1 of 3)	5332.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121832832-2	chr5	121832332	121833332	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001306127, intron 1 of 8)	intron (NM_001306127, intron 1 of 8)	3272.0	NM_001306126	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11779415-2	chr2	11778915	11779915	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177268, intron 1 of 6)	intron (NM_177268, intron 1 of 6)	1662.0	NM_177268	320816.0	Mm.260201	NM_177268	ENSMUSG00000047909	Ankrd16	2810455F06Rik|AI646698|D430029B21Rik	ankyrin repeat domain 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59565932-2	chr15	59565417	59566417	+	612.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-82737.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	2.0	3.0	0.0	0.0	7.0
Merged-chr12-117728878-1	chr12	117728378	117729378	+	612.0	f0_balb.idr	intron (NM_175930, intron 21 of 27)	intron (NM_175930, intron 21 of 27)	-114983.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	9.5	1.0	12.0	4.0	4.5	4.5
Merged-chr7-29998262-1	chr7	29997762	29998762	+	612.0	f0_balb.idr	intron (NM_001167873, intron 6 of 9)	intron (NM_001167873, intron 6 of 9)	14307.0	NM_001167872	243905.0	Mm.322432	NM_001033355	ENSMUSG00000074221	Zfp568	C80731|Gm1691|Znf568|chato	zinc finger protein 568	protein-coding	0.0	3.5	1.5	6.5	6.0	1.0
Merged-chr12-102129468-2	chr12	102128968	102129968	+	612.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001362345, exon 1 of 17)	exon (NM_001362345, exon 1 of 17)	741.0	NM_172152	238384.0	Mm.312448	NM_172152	ENSMUSG00000041771	Slc24a4	A930002M03Rik|AW492432|NCKX4	solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142529798-2	chr3	142529298	142530298	+	612.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083312)	promoter-TSS (NM_001083312)	-538.0	NM_001083312	229900.0	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35938888-2	chr18	35938388	35939388	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25942.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143056757-2	chr7	143056257	143057257	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133655, intron 1 of 7)	intron (NM_133655, intron 1 of 7)	-3071.0	NR_110354	97423.0	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	0.0	2.5	5.0	0.0	3.5	5.0
Merged-chr17-57223261-2	chr17	57222761	57223761	+	612.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009778, exon 12 of 41)	exon (NM_009778, exon 12 of 41)	4875.0	NM_009778	12266.0	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45533412-2	chr4	45532912	45533912	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-2584.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	3.5	0.0	0.0	0.0	0.0	0.5
Merged-chr10-110968798-2	chr10	110968298	110969298	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359624, intron 5 of 16)	intron (NM_001359624, intron 5 of 16)	41211.0	NM_001359622	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161072478-1	chr1	161071978	161072978	+	612.0	f1_c57bl6.idr	intron (NM_001159930, intron 1 of 4)	intron (NM_001159930, intron 1 of 4)	1711.0	NR_131029	70454.0	Mm.248212	NM_027429	ENSMUSG00000026708	Cenpl	2610300B10Rik|AW121806|AW550697|CENP-L	centromere protein L	protein-coding	0.0	3.0	6.5	3.5	18.0	8.5
Merged-chr18-37174039-2	chr18	37173539	37174539	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003672, intron 3 of 3)	Lx4A|LINE|L1	30070.0	NM_001003672	353237.0	Mm.308500	NM_001003672	ENSMUSG00000102697	Pcdhac2	CNRc2	protocadherin alpha subfamily C, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr5-66001026-1	chr5	66000526	66001526	+	612.0	f1_balb.idr	intron (NR_027961, intron 2 of 6)	intron (NR_027961, intron 2 of 6)	3259.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47360219-2	chr17	47359730	47360730	+	612.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172622, exon 17 of 17)	3' UTR (NM_172622, exon 17 of 17)	-8657.0	NM_001146212	64657.0	Mm.216250	NM_183086	ENSMUSG00000034729	Mrps10	1110038B19Rik|AW743084|Rpms10	mitochondrial ribosomal protein S10	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr9-121369319-2	chr9	121368819	121369819	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357973, intron 1 of 5)	intron (NM_001357973, intron 1 of 5)	2361.0	NM_175114	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33893711-1	chr17	33893211	33894211	+	612.0	f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-3078.0	NM_001195298	100502766.0	Mm.335713	NM_001195298	ENSMUSG00000079553	Kifc1	100042970|Gm4137|HSET|KNSL2|Kifc5a|Knsl2a|Tctex-7|Tctex-7A|Tctex7|Tctex7a	kinesin family member C1	protein-coding	0.0	6.0	1.0	3.5	0.5	0.5
Merged-chr14-102629771-2	chr14	102629271	102630271	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	352861.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45575646-1	chr19	45575146	45576146	+	612.0	f1_balb.idr	intron (NM_172639, intron 4 of 5)	intron (NM_172639, intron 4 of 5)	15061.0	NM_172639	226162.0	Mm.21978	NM_172639	ENSMUSG00000041035	Dpcd	Ndac	deleted in primary ciliary dyskinesia	protein-coding	0.0	0.0	1.5	0.0	0.0	1.0
Merged-chr11-90229101-2	chr11	90228601	90229601	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-20375.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34843403-1	chr19	34842903	34843903	+	612.0	f1_balb.idr	intron (NM_001114339, intron 1 of 6)	B1_Mus2|SINE|Alu	-22630.0	NR_029783	723826.0		NR_029783	ENSMUSG00000065594	Mir107	Mirn107|mir-107|mmu-mir-107	microRNA 107	ncRNA	14.5	3.5	3.0	19.5	6.5	4.5
Merged-chr11-120924531-2	chr11	120924031	120925031	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027745, intron 1 of 18)	MTEa|LTR|ERVL-MaLR	8341.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-15988162-1	chr19	15987662	15988662	+	612.0	f1_c57bl6.idr	intron (NR_045355, intron 2 of 2)	RMER19B|LTR|ERVK	3087.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	0.5	11.0	1.5	1.5	23.0	7.0
Merged-chr7-100876512-1	chr7	100876012	100877012	+	612.0	f1_balb.idr	exon (NM_001081116, exon 20 of 21)	exon (NM_001081116, exon 20 of 21)	5897.0	NR_037289	100526508.0		NR_037289	ENSMUSG00000093296	Mir3102	mmu-mir-3102	microRNA 3102	ncRNA	0.0	1.5	0.0	1.0	0.0	0.0
Merged-chr2-90448371-2	chr2	90447871	90448871	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 17 of 23)	MLT1C|LTR|ERVL-MaLR	30803.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4842772-1	chr18	4842272	4843272	+	612.0	f0_balb.idr	intron (NR_045881, intron 5 of 9)	intron (NR_045881, intron 5 of 9)	30286.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90241748-2	chr3	90241248	90242248	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030080, intron 4 of 9)	intron (NM_030080, intron 4 of 9)	802.0	NM_001307935	78284.0	Mm.299952	NM_030080	ENSMUSG00000027938	Creb3l4	1700012K17Rik|5330432F22Rik|AIBZIP|AV040530|AV258827|CREB4|JAL|TISP40|acre1	cAMP responsive element binding protein 3-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75806523-2	chr14	75806023	75807023	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-19486.0	NM_026232	67554.0	Mm.46067	NM_026232	ENSMUSG00000022003	Slc25a30	4933433D23Rik|AV025504|AV221431|AW319655|KMCP1	solute carrier family 25, member 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45178725-2	chr7	45178225	45179225	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195255, intron 2 of 4)	intron (NM_001195255, intron 2 of 4)	872.0	NM_001195255	100039953.0	Mm.300663	NM_001195255	ENSMUSG00000095276	Gfy	Gm2515|Gm581|Goofy	golgi-associated olfactory signaling regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123436956-1	chr5	123436456	123437456	+	612.0	f0_c57.idr	intron (NM_133917, intron 1 of 16)	intron (NM_133917, intron 1 of 16)	42158.0	NM_177582	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101818699-2	chr7	101818199	101819199	+	612.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008887, exon 1 of 3)	exon (NM_008887, exon 1 of 3)	386.0	NM_008887	11859.0	Mm.5028	NM_008887	ENSMUSG00000007946	Phox2a	Arix|Phox2|Pmx2|Pmx2a|Px2a	paired-like homeobox 2a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20501636-2	chr16	20501136	20502136	+	612.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172265, exon 4 of 16)	exon (NM_172265, exon 4 of 16)	2819.0	NM_172265	224045.0	Mm.233855	NM_172265	ENSMUSG00000003235	Eif2b5	C81315	eukaryotic translation initiation factor 2B, subunit 5 epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118163002-2	chr11	118162502	118163502	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33783.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34144320-2	chr17	34143820	34144820	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-1096.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	0.0	14.0	5.5	15.0	6.0	5.0
Merged-chr19-5645985-2	chr19	5645485	5646485	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009045, intron 10 of 10)	ID_B1|SINE|B4	8495.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45629131-1	chr19	45628631	45629631	+	612.0	f1_balb.idr	intron (NM_013907, intron 5 of 8)	intron (NM_013907, intron 5 of 8)	31062.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	0.0	4.0	1.0	0.0	9.5	1.0
Merged-chr16-23962498-2	chr16	23961998	23962998	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18785.0	NM_001348026	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121249426-2	chr5	121248926	121249926	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181421, intron 1 of 75)	intron (NM_181421, intron 1 of 75)	29207.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167764670-2	chr2	167764170	167765170	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73493.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33932783-2	chr17	33932294	33933294	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009059, intron 6 of 17)	intron (NM_009059, intron 6 of 17)	2900.0	NM_009059	19732.0	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	6.5	2.5	6.0	5.5	0.5	11.5
Merged-chr19-9936125-2	chr19	9935625	9936625	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36592.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	9.5	19.5	14.0	13.5	34.0	37.0
Merged-chr3-9598634-2	chr3	9598134	9599134	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133218, intron 1 of 8)	intron (NM_133218, intron 1 of 8)	11451.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	1.5	0.0	0.5	1.5	0.0	0.5
Merged-chr7-107684687-2	chr7	107684187	107685187	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357437, intron 2 of 23)	intron (NM_001357437, intron 2 of 23)	-7156.0	NM_001357438	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-69949199-1	chr9	69948699	69949699	+	612.0	f0_c57.idr	Intergenic	B4|SINE|B4	-40267.0	NM_016787	12175.0	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	6.0	0.0	0.5	7.5	0.0	0.0
Merged-chr8-6471314-1	chr8	6470814	6471814	+	612.0	f1_balb.idr	Intergenic	RMER20B|LTR|ERVK	-1366027.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	0.0	12.5	5.0	4.5	0.5	2.5
Merged-chr18-20751188-2	chr18	20750688	20751688	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4784.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59247081-2	chr2	59246581	59247581	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	Lx9|LINE|L1	86231.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111068498-2	chr9	111067998	111068998	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10980.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.0	0.0	0.5	0.5	2.0	0.5
Merged-chr5-24081997-1	chr5	24081497	24082497	+	612.0	f0_balb.idr	Intergenic	Intergenic	-18593.0	NM_026448	52323.0	Mm.273768	NM_026448	ENSMUSG00000028986	Klhl7	2700038B03Rik|D5Ertd363e|SBBI26	kelch-like 7	protein-coding	3.0	0.0	2.5	0.0	0.0	7.0
Merged-chr13-31227626-1	chr13	31227126	31228126	+	612.0	f0_balb.idr	intron (NR_045957, intron 1 of 2)	L1MA6|LINE|L1	13460.0	NR_045957	73924.0	Mm.417825	NR_045957	ENSMUSG00000087460	4930401O12Rik	-	RIKEN cDNA 4930401O12 gene	ncRNA	1.5	2.0	4.0	0.5	4.5	6.0
Merged-chr10-116943127-2	chr10	116942627	116943627	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359645, intron 1 of 10)	B3|SINE|B2	7326.0	NM_001359645	216363.0	Mm.336394	NM_001003950	ENSMUSG00000064181	Rab3ip	B230311A06|Gtpat12|Rabin3	RAB3A interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103513903-2	chr15	103513403	103514403	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357980, intron 1 of 14)	intron (NM_001357980, intron 1 of 14)	-1074.0	NM_001285890	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	3.0	1.0	1.5	2.0	1.0	2.0
Merged-chr10-24830744-1	chr10	24830244	24831244	+	612.0	f1_balb.idr	intron (NM_134005, intron 2 of 24)	intron (NM_134005, intron 2 of 24)	5451.0	NM_134005	209558.0	Mm.338425	NM_134005	ENSMUSG00000019989	Enpp3	AI876438|CD203c	ectonucleotide pyrophosphatase/phosphodiesterase 3	protein-coding	0.0	1.0	3.0	6.0	0.5	3.0
Merged-chr1-88588201-1	chr1	88587701	88588701	+	612.0	f0_c57.idr	Intergenic	MTB|LTR|ERVL-MaLR	36684.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-148283577-1	chr6	148283077	148284077	+	612.0	f0_balb.idr	intron (NM_001347518, intron 10 of 18)	intron (NM_001347518, intron 10 of 18)	-71079.0	NR_003634	66184.0	Mm.391542	NM_025405	ENSMUSG00000063171	Rps4l	1110033J19Rik|AA407494|Rps4y2	ribosomal protein S4-like	pseudo	3.0	1.5	1.5	3.0	1.5	1.5
Merged-chr8-13892121-2	chr8	13891621	13892621	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTA)n|Simple_repeat|Simple_repeat	-1850.0	NM_025556	66423.0	Mm.29063	NM_025556	ENSMUSG00000031458	Coprs	1700029I03Rik|2410022L05Rik|AA409325|AI256813|C85432|Copr5	coordinator of PRMT5, differentiation stimulator	protein-coding	1.5	0.0	0.0	0.0	2.0	0.0
Merged-chr5-108587338-1	chr5	108586838	108587838	+	612.0	f1_balb.idr	intron (NM_001359923, intron 18 of 22)	intron (NM_001359923, intron 18 of 22)	-37311.0	NM_007756	12889.0	Mm.5195	NM_007756	ENSMUSG00000033615	Cplx1	921-S	complexin 1	protein-coding	2.0	2.5	0.5	4.0	1.5	5.0
Merged-chr4-99185170-1	chr4	99184670	99185670	+	612.0	f1_balb.idr	Intergenic	Intergenic	-8764.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	22.5	121.0	55.5	25.0	75.0	81.0
Merged-chr5-29825020-2	chr5	29824520	29825520	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89084.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100861448-2	chr11	100860948	100861948	+	612.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164062, exon 2 of 18)	exon (NM_001164062, exon 2 of 18)	964.0	NM_001164062	20850.0	Mm.277403	NM_011488	ENSMUSG00000004043	Stat5a	AA959963|STAT5	signal transducer and activator of transcription 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-113645241-1	chr2	113644741	113645741	+	612.0	f1_balb.idr	intron (NM_001285459, intron 13 of 16)	intron (NM_001285459, intron 13 of 16)	-39849.0	NM_001287818	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	3.5	32.5	10.0	1.5	27.0	19.0
Merged-chr7-100490715-2	chr7	100490215	100491215	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2643.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-72345638-1	chr7	72345138	72346138	+	612.0	f0_balb.idr	Intergenic	Intergenic	-39043.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29460700-2	chr19	29460200	29461200	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	MTC|LTR|ERVL-MaLR	49781.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98772021-2	chr15	98771521	98772521	+	612.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011718, exon 5 of 5)	3' UTR (NM_011718, exon 5 of 5)	6129.0	NM_011718	22410.0	Mm.4709	NM_011718	ENSMUSG00000022996	Wnt10b	Wnt12	wingless-type MMTV integration site family, member 10B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86524008-2	chr1	86523508	86524508	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2549.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23369871-2	chr16	23369371	23370371	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59262.0	NM_001004151	239766.0	Mm.208751	NM_001004151	ENSMUSG00000033383	Rtp1	Gm1766|Gm604	receptor transporter protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36763528-2	chr5	36763028	36764028	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14849.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-192736150-3	chr1	192735634	192736634	+	611.988892	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 4 of 11)	intron (NM_144881, intron 4 of 11)	35085.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	1.0	1.0	1.0	0.5	0.0	1.5
Merged-chr8-70758293-2	chr8	70757793	70758793	+	611.924988	f1_balb.idr|f1_c57bl6.idr	TTS (NM_183170)	TTS (NM_183170)	2628.0	NM_183170	234384.0	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	0.0	6.0	0.5	2.0	3.5	1.0
Merged-chr11-51649933-2	chr11	51649433	51650433	+	611.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_145974, intron 1 of 4)	intron (NM_145974, intron 1 of 4)	-1021.0	NR_027958	97775.0	Mm.220299	NM_175289	ENSMUSG00000052563	D930048N14Rik	AI315703|R75254	RIKEN cDNA D930048N14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118130782-2	chr7	118130282	118131282	+	611.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001031814)	TTS (NM_001031814)	-1157.0	NM_019419	54208.0	Mm.29924	NM_019419	ENSMUSG00000030654	Arl6ip1	AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97753507-2	chr7	97753010	97754010	+	611.75	f0_balb.idr|f1_balb.idr	Intergenic	B4A|SINE|B4	-15263.0	NM_175105	66333.0	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	1.0	0.0	5.0	5.0	11.0	10.5
Merged-chr19-23250180-2	chr19	23249680	23250680	+	611.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252684, intron 8 of 24)	L1MD|LINE|L1	22419.0	NM_001252685	226026.0	Mm.23267	NM_153808	ENSMUSG00000024943	Smc5	MLZ-453|SMC-5|Smc5l1|mKIAA0594|mSMC5	structural maintenance of chromosomes 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27057927-2	chr17	27057427	27058427	+	611.708374	f1_balb.idr|f1_c57bl6.idr	intron (NM_080553, intron 1 of 57)	intron (NM_080553, intron 1 of 57)	623.0	NM_080553	16440.0	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	0.0	0.0	0.0	3.0	0.0	0.0
Merged-chr1-189807127-2	chr1	189806640	189807640	+	611.700012	f0_c57.idr|f1_c57bl6.idr	intron (NM_008976, intron 3 of 18)	intron (NM_008976, intron 3 of 18)	78872.0	NM_008976	19250.0	Mm.4498	NM_008976	ENSMUSG00000026604	Ptpn14	C130080N23Rik|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding	16.0	18.0	17.5	0.0	0.0	1.5
Merged-chr1-176712588-2	chr1	176712088	176713088	+	611.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	59835.0	NR_029775	723921.0		NR_029775	ENSMUSG00000065573	Mir350	Mirn350|mir-350|mmu-mir-350	microRNA 350	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147133804-2	chr4	147133304	147134304	+	611.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42062.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64281760-3	chr7	64281286	64282286	+	611.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-5884.0	NM_172742	233315.0	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38471922-2	chr2	38471422	38472422	+	611.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-39775.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127694888-2	chr10	127694388	127695388	+	611.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173732, exon 7 of 7)	3' UTR (NM_173732, exon 7 of 7)	-10368.0	NM_001081219	432516.0	Mm.90450	NM_001081219	ENSMUSG00000025401	Myo1a	BBM-I|Myhl	myosin IA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-148993967-3	chr6	148993467	148994467	+	611.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177192, intron 20 of 20)	intron (NM_177192, intron 20 of 20)	-47497.0	NM_001361398	56306.0	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Sinhcaf|Tera	family with sequence similarity 60, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30136891-2	chr2	30136391	30137391	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146252, intron 3 of 11)	intron (NM_146252, intron 3 of 11)	3145.0	NM_146252	70296.0	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154559018-2	chr2	154558518	154559518	+	611.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021546)	promoter-TSS (NM_021546)	-165.0	NM_021546	56846.0	Mm.143748	NM_021546	ENSMUSG00000027489	Necab3	2900010M17Rik|AI853434|Apba2bp|Nip1|XB51	N-terminal EF-hand calcium binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-86900014-1	chr8	86899514	86900514	+	611.5	f0_balb.idr	Intergenic	MT2B1|LTR|ERVL	-14756.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	13.0	11.0	1.0	0.0	3.5	4.0
Merged-chr8-11012280-2	chr8	11011780	11012780	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_046017, intron 1 of 4)	intron (NR_046017, intron 1 of 4)	-3850.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137821863-2	chr5	137821363	137822363	+	611.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153510)	TTS (NM_153510)	14415.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94699322-2	chr16	94698822	94699822	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87903.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137664842-2	chr4	137664342	137665342	+	611.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_138591, exon 1 of 24)	non-coding (NR_138591, exon 1 of 24)	116.0	NR_138591	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	2.0	1.5	1.0	0.5	3.0	0.0
Merged-chr10-94277932-1	chr10	94277432	94278432	+	611.5	f0_balb.idr	Intergenic	Intergenic	20771.0	NR_033209	215472.0	Mm.255656	NM_174999	ENSMUSG00000053420	Gm4792	E130012K09|EG215472	predicted gene 4792	ncRNA	0.0	0.0	1.0	0.0	2.0	3.5
Merged-chr2-91935127-2	chr2	91934627	91935627	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166597, intron 26 of 31)	intron (NM_001166597, intron 26 of 31)	-2830.0	NM_010784	17242.0	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	1.5	0.0	1.0	5.0	3.0	1.5
Merged-chr3-36065148-2	chr3	36064648	36065648	+	611.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172678)	promoter-TSS (NM_172678)	-831.0	NM_172678	229211.0	Mm.260997	NM_172678	ENSMUSG00000027710	Acad9	2600017P15Rik|4732402K02|C630012L17Rik|NPD002	acyl-Coenzyme A dehydrogenase family, member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-16855975-2	chr16	16855475	16856475	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	8010.0	NM_001190325	16136.0	Mm.184441	NM_001190325	ENSMUSG00000075370	Igll1	BB139905|Igl-5|Igll|Lambda5	immunoglobulin lambda-like polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-8675067-2	chr8	8674567	8675567	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176849, intron 3 of 3)	ORR1A2-int|LTR|ERVL-MaLR	-14294.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76664773-2	chr15	76664273	76665273	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358910, intron 13 of 18)	intron (NM_001358910, intron 13 of 18)	4192.0	NM_001358911	16581.0	Mm.378950	NM_010630	ENSMUSG00000004187	Kifc2	-	kinesin family member C2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34065673-2	chr17	34065127	34066127	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009926, intron 63 of 63)	intron (NM_009926, intron 63 of 63)	26489.0	NM_001317722	12815.0	Mm.20230	NM_009926	ENSMUSG00000024330	Col11a2	-	collagen, type XI, alpha 2	protein-coding	0.0	0.0	2.0	0.0	0.0	2.0
Merged-chr1-171143321-2	chr1	171142817	171143817	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025321, intron 3 of 5)	B2_Mm1a|SINE|B2	7286.0	NM_025321	66052.0	Mm.198138	NM_025321	ENSMUSG00000058076	Sdhc	0610010E03Rik|AI316496|AU019277	succinate dehydrogenase complex, subunit C, integral membrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99089833-2	chr15	99089333	99090333	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2105.0	NM_001024702	239659.0	Mm.309917	NM_001024702	ENSMUSG00000001076	C1ql4	C1qtnf11|CTRP11	complement component 1, q subcomponent-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99125386-2	chr15	99124886	99125886	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1459.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-7866894-2	chr17	7866394	7867394	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59106.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99847519-2	chr15	99847019	99848019	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113545, intron 1 of 10)	intron (NM_001113545, intron 1 of 10)	-27370.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64220836-2	chr5	64220336	64221336	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-9521.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132703270-2	chr7	132702770	132703770	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 6 of 6)	intron (NM_029609, intron 6 of 6)	73646.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26316025-2	chr2	26315525	26316525	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355575, intron 1 of 13)	intron (NM_001355575, intron 1 of 13)	492.0	NM_153410	67839.0	Mm.266611	NM_153410	ENSMUSG00000026930	Gpsm1	1810037C22Rik|AW107933|Ags3	G-protein signalling modulator 1 (AGS3-like, C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95215758-2	chr3	95215258	95216258	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029885, intron 2 of 9)	RSINE1|SINE|B4	-1699.0	NR_108026	100504029.0	Mm.478537	NR_108026	ENSMUSG00000097167	Gm16740	-	predicted gene, 16740	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26355507-2	chr2	26355007	26356007	+	611.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001037747, exon 7 of 12)	exon (NM_001037747, exon 7 of 12)	-3397.0	NM_001139504	52838.0	Mm.31239	NM_026828	ENSMUSG00000075467	Dnlz	1110034G11Rik|D2Bwg1335e|HEP1	DNL-type zinc finger	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-81684904-2	chr16	81684404	81685404	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	484207.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108857095-2	chr9	108856595	108857595	+	611.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_134420, exon 6 of 18)	exon (NM_134420, exon 6 of 18)	3052.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-77044392-2	chr1	77043892	77044892	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	452376.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102817464-2	chr2	102816982	102817982	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 13 of 13)	URR1A|DNA|hAT-Charlie	-70722.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	20.5	28.0	15.5	39.0	24.5	31.0
Merged-chr8-26849365-2	chr8	26848865	26849865	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24942.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75715172-2	chr7	75714672	75715672	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 17 of 36)	intron (NM_029332, intron 17 of 36)	-133166.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26972254-2	chr8	26971754	26972754	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-5082.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74399294-2	chr1	74398794	74399794	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4984.0	NR_029743	387219.0		NR_029743	ENSMUSG00000065468	Mir26b	Mirn26b|mir-26b|mmu-mir-26b	microRNA 26b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38001270-2	chr18	38000773	38001773	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2304.0	NM_001205336	106952.0	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	6.5	10.5	4.5	6.0	2.0	12.5
Merged-chr10-110743878-2	chr10	110743378	110744378	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1561.0	NM_001358560	52679.0	Mm.11747	NM_178609	ENSMUSG00000020185	E2f7	A630014C11Rik|D10Ertd739e|E2F-7	E2F transcription factor 7	protein-coding	0.0	0.0	3.0	0.0	0.0	3.0
Merged-chr6-97413984-2	chr6	97413484	97414484	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 4 of 23)	B3|SINE|B2	45302.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38238545-2	chr16	38238045	38239045	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 11 of 11)	intron (NM_001347232, intron 11 of 11)	56279.0	NM_010936	18171.0	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139602392-2	chr4	139601892	139602892	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	-20502.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	0.0	10.5	9.0	0.0	5.5	1.5
Merged-chr3-152212807-2	chr3	152212307	152213307	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355374, intron 1 of 19)	Lx3C|LINE|L1	2385.0	NM_001355374	51886.0	Mm.278922	NM_057172	ENSMUSG00000028034	Fubp1	9530027K12Rik|D3Ertd330e|FBP|Fubp|Fubp4	far upstream element (FUSE) binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127879361-2	chr10	127878861	127879861	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	9338.0	NM_017473	54150.0	Mm.6696	NM_017473	ENSMUSG00000040134	Rdh7	AI194929|CRAD2	retinol dehydrogenase 7	protein-coding	3.0	0.0	0.0	0.5	2.0	0.0
Merged-chr2-127300914-2	chr2	127300414	127301414	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	30685.0	NM_139308	99138.0	Mm.41271	NM_139308	ENSMUSG00000027367	Stard7	AI852671|AL022671|AW544915	START domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74950755-2	chr15	74950251	74951251	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4300.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	1.0	5.0	1.0	1.0	4.0	2.0
Merged-chr4-11150168-2	chr4	11149668	11150668	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6273.0	NM_001199105	60599.0	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap|p53DINP1	transformation related protein 53 inducible nuclear protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-181210154-2	chr1	181209654	181210654	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145514, intron 1 of 13)	intron (NM_145514, intron 1 of 13)	1824.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142468737-2	chr5	142468237	142469237	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172725, intron 5 of 16)	intron (NM_172725, intron 5 of 16)	4806.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-3266352-2	chr15	3265852	3266852	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4415.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-106714230-2	chr14	106713730	106714730	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-227710.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106339621-2	chr9	106339170	106340170	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 10 of 10)	B1_Mm|SINE|Alu	-28962.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	0.5	2.0	0.0	0.0	0.5	0.5
Merged-chr10-121371644-2	chr10	121371144	121372144	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 2 of 13)	intron (NM_029364, intron 2 of 13)	6554.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0.0	9.0	10.5	14.0	10.0	4.5
Merged-chr11-23310205-2	chr11	23309705	23310705	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190401, intron 1 of 79)	intron (NM_001190401, intron 1 of 79)	3310.0	NM_001190401	17847.0	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99051093-2	chr7	99050593	99051593	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 6 of 14)	intron (NM_178635, intron 6 of 14)	90051.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80179175-2	chr10	80178675	80179675	+	611.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007909)	promoter-TSS (NM_007909)	-307.0	NM_007909	13637.0	Mm.1478	NM_007909	ENSMUSG00000003070	Efna2	CEK7L|Elf1|Epl6|Eplg6|Lerk6	ephrin A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-17133166-2	chr18	17132666	17133666	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_130158, intron 7 of 7)	intron (NR_130158, intron 7 of 7)	97658.0	NR_130158	75433.0	Mm.60907	NR_130158	ENSMUSG00000087170	1700001G01Rik	-	RIKEN cDNA 1700001G01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35266886-2	chr18	35266386	35267386	+	611.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_030749, exon 10 of 10)	exon (NM_030749, exon 10 of 10)	-51862.0	NM_178005	107065.0	Mm.39900	NM_178005	ENSMUSG00000071862	Lrrtm2	AI851755|BB129880|C630011A14Rik|mKIAA0416	leucine rich repeat transmembrane neuronal 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30378281-2	chr16	30377781	30378781	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128096, intron 2 of 33)	B1_Mur2|SINE|Alu	10249.0	NM_001128094	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	6.0	5.5	0.5	6.0	6.0	0.5
Merged-chr9-31131475-1	chr9	31130975	31131975	+	611.5	f0_balb.idr	intron (NM_011176, intron 1 of 18)	CpG	324.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118006017-2	chr2	118005517	118006517	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	105185.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	0.0	0.0	2.0	0.5	4.5	0.0
Merged-chr1-131913541-2	chr1	131913041	131914041	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145804, intron 1 of 6)	RSINE1|SINE|B4	3083.0	NM_175294	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	6.0	2.5	3.5	2.5	1.0	0.5
Merged-chr16-11457684-2	chr16	11457184	11458184	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 13 of 20)	B1F1|SINE|Alu	52036.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29534050-2	chr6	29533550	29534550	+	611.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_012057, exon 3 of 9)	exon (NM_012057, exon 3 of 9)	4768.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-177805197-2	chr1	177804697	177805697	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8688.0	NM_007422	11566.0	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-26411998-2	chr10	26411498	26412498	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-36779.0	NM_172787	237339.0	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	L3MBTL3 histone methyl-lysine binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-101601830-2	chr3	101601330	101602330	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	2877.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122767227-2	chr5	122766727	122767727	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199676, intron 1 of 16)	intron (NM_001199676, intron 1 of 16)	12183.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-62917776-2	chr12	62917276	62918276	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	229989.0	NR_131949	73309.0	Mm.276558	NR_131949		Spanxn4	1700047L15Rik	SPANX family, member N4	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148036608-2	chr4	148036108	148037108	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011929, intron 2 of 22)	intron (NM_011929, intron 2 of 22)	2205.0	NM_011929	26372.0	Mm.89987	NM_011929	ENSMUSG00000029016	Clcn6	AI850629|Clc6	chloride channel, voltage-sensitive 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-26862883-2	chr10	26862383	26863383	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 5 of 14)	intron (NM_176837, intron 5 of 14)	90371.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62500125-4	chr4	62499595	62500595	+	611.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024257, intron 1 of 1)	intron (NM_024257, intron 1 of 1)	2105.0	NM_024257	72748.0	Mm.41506	NM_024257	ENSMUSG00000038422	Hdhd3	2810435D12Rik	haloacid dehalogenase-like hydrolase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-48544752-2	chr13	48544252	48545252	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6480.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43924894-3	chr4	43924390	43925390	+	611.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016678, intron 11 of 20)	intron (NM_016678, intron 11 of 20)	-32812.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	0.5	0.5	0.0	0.0	0.5	0.0
Merged-chr3-103399980-2	chr3	103399535	103400535	+	611.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	120742.0	NM_053170	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	0.0	0.5	4.0	4.0	1.5	2.5
Merged-chr13-33045863-3	chr13	33045383	33046383	+	611.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18469.0	NM_011452	20706.0	Mm.45371	NM_011452	ENSMUSG00000021403	Serpinb9b	1600019A21Rik|R86|SPI-CI|Spi10|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9b	protein-coding	25.0	28.5	15.5	5.0	12.5	14.0
Merged-chr3-27186301-3	chr3	27185809	27186809	+	611.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	3305.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146481610-3	chr6	146481110	146482110	+	611.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 1 of 56)	intron (NM_019923, intron 1 of 56)	20613.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	1.5	0.0	0.0	1.5	13.0	0.0
Merged-chr7-110270534-2	chr7	110270034	110271034	+	611.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_009302, intron 7 of 11)	intron (NM_009302, intron 7 of 11)	48831.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173411195-2	chr1	173410673	173411673	+	611.25	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9431.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	17.0	24.0	13.5	42.5	51.0	35.5
Merged-chr5-123117416-2	chr5	123116916	123117916	+	611.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001039723)	TTS (NM_001039723)	15213.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	0.0	0.0	0.0	0.0	8.5	0.0
Merged-chr11-118197794-2	chr11	118197294	118198294	+	611.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	14948.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138684051-3	chr5	138683545	138684545	+	611.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	61186.0	NM_183025	243308.0	Mm.36612	NM_183025	ENSMUSG00000056014	A430033K04Rik	C86988	RIKEN cDNA A430033K04 gene	protein-coding	90.5	104.5	129.5	43.5	88.5	69.5
Merged-chr18-46312926-2	chr18	46312426	46313426	+	611.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160399)	promoter-TSS (NM_001160399)	-998.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	0.5	3.5	0.0	0.0	1.5	3.5
Merged-chr7-100471202-2	chr7	100470702	100471702	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1789.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12347531-1	chr18	12347031	12348031	+	611.0	f0_balb.idr	intron (NM_010680, intron 1 of 74)	intron (NM_010680, intron 1 of 74)	13507.0	NM_010680	16774.0	Mm.42012	NM_010680	ENSMUSG00000024421	Lama3	Lama3B|[a]3B	laminin, alpha 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27055787-2	chr17	27055287	27056287	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-1517.0	NM_080553	16440.0	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75907635-1	chr11	75907135	75908135	+	611.0	f0_balb.idr	intron (NM_029548, intron 2 of 7)	intron (NM_029548, intron 2 of 7)	3424.0	NM_029548	380714.0	Mm.425697	NM_029548	ENSMUSG00000020847	Rph3al	Gm1753|Noc2	rabphilin 3A-like (without C2 domains)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110986895-1	chr5	110986395	110987395	+	611.0	f0_balb.idr	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	-17249.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	1.0	1.5	0.0	7.5	4.5	6.0
Merged-chr6-39054520-2	chr6	39054020	39055020	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 9 of 12)	intron (NM_011539, intron 9 of 12)	13066.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97778702-2	chr15	97778202	97779202	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5663.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-104504262-1	chr13	104503762	104504762	+	611.0	f0_c57.idr	Intergenic	RMER6B|LTR|ERVK	216427.0	NM_001081020	108154.0	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	19.5	1.5	9.0	4.0	0.0	2.5
Merged-chr17-6750656-2	chr17	6750156	6751156	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 6 of 12)	intron (NM_009510, intron 6 of 12)	32124.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70208409-2	chr14	70207909	70208909	+	611.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011366)	promoter-TSS (NM_011366)	-738.0	NM_011366	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-89392996-2	chr7	89392496	89393496	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 1 of 14)	intron (NM_001360746, intron 1 of 14)	11226.0	NM_001360746	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47653501-2	chr9	47653024	47654024	+	611.0	f0_balb.idr|f1_balb.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	123172.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	5.0	21.5	6.0	33.5	40.5	31.5
Merged-chr18-47461189-2	chr18	47460689	47461689	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033453, intron 3 of 3)	intron (NR_033453, intron 3 of 3)	8521.0	NR_033453	77668.0	Mm.98433	NR_033453		9130209A04Rik	-	RIKEN cDNA 9130209A04 gene	ncRNA	0.0	0.0	0.0	3.0	0.0	0.0
Merged-chr11-45627208-3	chr11	45626727	45627727	+	611.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-180856.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0.0	4.5	0.0	0.0	0.0	0.5
Merged-chr9-17752625-2	chr9	17752125	17753125	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-539642.0	NM_025844	66917.0	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153969361-3	chr1	153968864	153969864	+	611.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	69435.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74661746-2	chr11	74661246	74662246	+	611.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081158, exon 10 of 26)	exon (NM_001081158, exon 10 of 26)	12251.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	4.0	0.0	0.0	2.0	2.5	2.5
Merged-chr3-90693834-1	chr3	90693334	90694334	+	611.0	f1_balb.idr	intron (NM_009114, intron 2 of 2)	intron (NM_009114, intron 2 of 2)	1887.0	NM_009114	20202.0	Mm.2128	NM_009114	ENSMUSG00000056071	S100a9	60B8Ag|AW546964|BEE22|Cagb|GAGB|L1Ag|MRP14|p14	S100 calcium binding protein A9 (calgranulin B)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54829750-1	chr13	54829250	54830250	+	611.0	f1_c57bl6.idr	Intergenic	Intergenic	40345.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	12.5	17.5	17.0	3.0	3.5	0.5
Merged-chr2-45232495-3	chr2	45231998	45232998	+	611.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115056.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5947446-2	chr17	5946946	5947946	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151772, intron 1 of 25)	intron (NR_151772, intron 1 of 25)	6166.0	NM_001113352	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181272948-2	chr2	181272448	181273448	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198169, intron 2 of 9)	intron (NM_198169, intron 2 of 9)	15018.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-52501587-2	chr12	52501087	52502087	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14490.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	4.5	32.5	18.0	3.5	25.5	16.0
Merged-chr16-83674481-2	chr16	83673981	83674981	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-696662.0	NR_040567	75247.0	Mm.417813	NR_040567		4930553E22Rik	-	RIKEN cDNA 4930553E22 gene	ncRNA	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr1-172307800-1	chr1	172307300	172308300	+	611.0	f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-4567.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	2.0	5.5	0.0	7.0	4.5	7.5
Merged-chr4-154943354-2	chr4	154942854	154943854	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15277.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	52.5	162.5	90.0	149.5	374.0	193.5
Merged-chr13-49421634-1	chr13	49421134	49422134	+	611.0	f0_balb.idr	promoter-TSS (NM_001276399)	promoter-TSS (NM_001276399)	20.0	NM_001276399	75678.0	Mm.390586	NM_199056	ENSMUSG00000021385	Ippk	1810043M15Rik|InsP6	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98793585-2	chr15	98793085	98794085	+	611.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021279, exon 4 of 4)	3' UTR (NM_021279, exon 4 of 4)	3728.0	NM_021279	22408.0	Mm.1123	NM_021279	ENSMUSG00000022997	Wnt1	Int-1|Wnt-1|sw|swaying	wingless-type MMTV integration site family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55556565-2	chr14	55556065	55557065	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-3464.0	NR_037572	28199.0	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-56748042-1	chr13	56747542	56748542	+	611.0	f0_balb.idr	Intergenic	L2c|LINE|L2	44374.0	NM_001164042	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	4.0	1.0	0.5	4.0	6.0	3.5
Merged-chr4-149784639-2	chr4	149784139	149785139	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10372.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63583911-2	chr4	63583411	63584411	+	611.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001356354, exon 10 of 10)	exon (NM_001356354, exon 10 of 10)	16853.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61730137-1	chr11	61729637	61730637	+	611.0	f1_c57bl6.idr	3' UTR (NM_001164242, exon 11 of 11)	3' UTR (NM_001164242, exon 11 of 11)	-9338.0	NM_001033227	109342.0	Mm.441070	NM_001033227	ENSMUSG00000042371	Slc5a10	C330021F16Rik|SGLT5	solute carrier family 5 (sodium/glucose cotransporter), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72863658-3	chr5	72863167	72864167	+	611.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 1 of 17)	intron (NM_013689, intron 1 of 17)	4781.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110656181-2	chr5	110655681	110656681	+	611.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027156, exon 9 of 15)	exon (NM_027156, exon 9 of 15)	2730.0	NM_027156	69663.0	Mm.5267	NM_027156	ENSMUSG00000029504	Ddx51	2310061O04Rik|AA537002|C81583|R75505	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51	protein-coding	0.0	0.0	0.5	0.0	0.0	1.0
Merged-chr12-86818861-2	chr12	86818361	86819361	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65953.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108295586-1	chr3	108295086	108296086	+	611.0	f0_balb.idr	intron (NM_019972, intron 1 of 19)	intron (NM_019972, intron 1 of 19)	11522.0	NM_019972	20661.0	Mm.157119	NM_019972	ENSMUSG00000068747	Sort1	2900053A11Rik|AI852375|Ntr3|Ntsr3	sortilin 1	protein-coding	3.0	9.5	10.0	0.5	1.5	2.0
Merged-chr13-20575292-1	chr13	20574792	20575792	+	611.0	f1_balb.idr	intron (NM_198093, intron 3 of 6)	intron (NM_198093, intron 3 of 6)	102302.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	10.0	0.0	8.0	0.0	5.0	8.5
Merged-chr15-95953735-2	chr15	95953235	95954235	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 15 of 19)	intron (NM_175344, intron 15 of 19)	-123663.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-62939325-2	chr16	62938825	62939825	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85018.0	NM_011173	19128.0	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81031711-2	chr15	81031211	81032211	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 3 of 13)	intron (NM_001082536, intron 3 of 13)	53946.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-5241483-1	chr15	5240983	5241983	+	611.0	f0_c57.idr	intron (NM_001136079, intron 2 of 2)	intron (NM_001136079, intron 2 of 2)	2704.0	NM_001136079	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-48413283-2	chr18	48412783	48413783	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	367948.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29305816-2	chr7	29305316	29306316	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013874, intron 1 of 11)	intron (NM_013874, intron 1 of 11)	1811.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	0.0	0.0	0.0	0.0	1.0	1.5
Merged-chr12-3662514-2	chr12	3662014	3663014	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 8 of 17)	B3|SINE|B2	89530.0	NM_007886	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144240562-2	chr2	144240062	144241062	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25640.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91613920-2	chr16	91613420	91614420	+	611.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_138664)	TTS (NM_138664)	5079.0	NM_001099738	246738.0	Mm.101927	NM_138664	ENSMUSG00000039763	Dnajc28	BC020175|ORF28	DnaJ heat shock protein family (Hsp40) member C28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83723110-2	chr7	83722610	83723610	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 1 of 18)	intron (NM_001360088, intron 1 of 18)	9288.0	NM_001360087	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85024080-2	chr8	85023547	85024547	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357202, intron 2 of 6)	B3|SINE|B2	1240.0	NM_001357203	56495.0	Mm.41475	NM_019652	ENSMUSG00000052456	Asna1	1810048H22Rik|ArsA	arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	protein-coding	0.5	7.0	2.0	0.0	5.5	1.0
Merged-chr10-8872650-2	chr10	8872150	8873150	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	B1_Mus2|SINE|Alu	13420.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	33.0	28.0	36.5	31.0	19.5	22.0
Merged-chr13-66591865-2	chr13	66591365	66592365	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-150747.0	NM_001290196	76803.0	Mm.183391	NM_183119	ENSMUSG00000074832	2410141K09Rik	4930482J15Rik|Ayu21-35|Gt(pU21)35Imeg	RIKEN cDNA 2410141K09 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-76813285-1	chr17	76812785	76813785	+	611.0	f1_balb.idr	Intergenic	Lx3_Mus|LINE|L1	952262.0	NR_033456	100043885.0	Mm.127562	NR_033456		Gm4710	-	predicted gene 4710	ncRNA	0.0	5.0	0.0	1.5	0.0	4.0
Merged-chr18-4313447-1	chr18	4312947	4313947	+	611.0	f0_c57.idr	Intergenic	Intergenic	39506.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-51523462-2	chr6	51522962	51523962	+	611.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127349)	promoter-TSS (NM_001127349)	-441.0	NM_001361582	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	10.5	20.5	12.0	11.5	51.0	45.5
Merged-chr6-65585174-2	chr6	65584674	65585674	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5224.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5465044-1	chr11	5464544	5465544	+	611.0	f1_c57bl6.idr	Intergenic	Intergenic	-20197.0	NM_001080924	407821.0	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	2.0	0.0	1.5	0.0	0.0	1.0
Merged-chr3-145004598-2	chr3	145004098	145005098	+	611.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_017474)	TTS (NM_017474)	28178.0	NM_017474	23844.0	Mm.33483	NM_017474	ENSMUSG00000028255	Clca1	Clca2|Clca3|gob-5|gob5	chloride channel accessory 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3187017-2	chr8	3186517	3187517	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330056, intron 9 of 21)	ID_B1|SINE|B4	92600.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92213935-2	chr1	92213435	92214435	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33594.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0.5	3.0	1.5	4.0	0.5	0.0
Merged-chr18-78015561-2	chr18	78015061	78016061	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195633, intron 32 of 43)	intron (NM_001195633, intron 32 of 43)	41707.0	NM_001101038	620235.0	Mm.35607	NM_001101038	ENSMUSG00000091055	Siglec15	Cd33l3|EG620235|SIGLEC-I	sialic acid binding Ig-like lectin 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6045006-2	chr19	6044506	6045506	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1570.0	NM_028769	74126.0	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54019421-3	chr6	54018988	54019988	+	611.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20444.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	6.0	8.0	11.5	3.5	20.5	6.5
Merged-chr4-53049630-2	chr4	53049130	53050130	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 36 of 49)	intron (NM_013454, intron 36 of 49)	37750.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-119472398-3	chr6	119471894	119472894	+	611.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009525, intron 1 of 4)	ERVL-int|LTR|ERVL	-5183.0	NM_001271758	22419.0	Mm.321818	NM_009525	ENSMUSG00000030170	Wnt5b	AW545702|Wnt-5b	wingless-type MMTV integration site family, member 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116013352-2	chr11	116012852	116013852	+	611.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016905)	promoter-TSS (NM_016905)	-633.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46356012-1	chr4	46355512	46356512	+	611.0	f0_balb.idr	Intergenic	Intergenic	11818.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr9-63136519-2	chr9	63136019	63137019	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10461.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122679933-1	chr8	122679433	122680433	+	611.0	f1_c57bl6.idr	intron (NM_009824, intron 1 of 11)	intron (NM_009824, intron 1 of 11)	-1758.0	NM_177289	12398.0	Mm.194339	NM_009824	ENSMUSG00000006362	Cbfa2t3	A630044F12Rik|AI465270|AW229127|Cbfa2t3h|ETO-2|Eto2|MTGR2	core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81014309-2	chr15	81013809	81014809	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 13 of 13)	intron (NM_001082536, intron 13 of 13)	36544.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32175376-2	chr16	32174876	32175876	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4424.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116009302-2	chr6	116008802	116009802	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-14297.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19713575-2	chr7	19713075	19714075	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109748, intron 3 of 8)	intron (NM_001109748, intron 3 of 8)	1854.0	NM_001109748	53333.0	Mm.61682	NM_016871	ENSMUSG00000002984	Tomm40	AW539759|Mom35|Tom40	translocase of outer mitochondrial membrane 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53776421-2	chr11	53775921	53776921	+	611.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001159396, exon 10 of 10)	exon (NM_001159396, exon 10 of 10)	5948.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-39498059-1	chr8	39497559	39498559	+	611.0	f0_balb.idr	Intergenic	Intergenic	144619.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	3.0	0.0	0.5	7.5	0.5	3.5
Merged-chr7-126237438-1	chr7	126236938	126237938	+	611.0	f1_c57bl6.idr	intron (NR_131046, intron 2 of 4)	intron (NR_131046, intron 2 of 4)	166.0	NR_131047	76728.0	Mm.76920	NR_131046	ENSMUSG00000108676	1700123J17Rik	Gm44875	RIKEN cDNA 1700123J17 gene	ncRNA	1.0	0.0	1.0	0.0	0.0	0.0
Merged-chr1-193130749-2	chr1	193130249	193131249	+	611.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151719)	promoter-TSS (NR_151719)	-479.0	NR_151719	215193.0	Mm.173758	NM_145415	ENSMUSG00000016181	Diexf	AA408296|AW045375|Def	digestive organ expansion factor homolog (zebrafish)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90656726-1	chr5	90656226	90657226	+	611.0	f1_c57bl6.idr	Intergenic	Intergenic	-16199.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	3.5	7.0	0.0	7.5	1.0	0.0
Merged-chr2-36226051-2	chr2	36225551	36226551	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4375.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80829490-2	chr10	80828990	80829990	+	611.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_027656)	TTS (NR_027656)	693.0	NR_035503	100316778.0		NR_035503	ENSMUSG00000087993	Mir1982	mir-1982|mmu-mir-1982	microRNA 1982	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67232630-1	chr17	67232130	67233130	+	611.0	f1_balb.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	121829.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	5.0	4.0	17.5	7.0	1.0	3.0
Merged-chr6-106279615-1	chr6	106279115	106280115	+	611.0	f0_balb.idr	intron (NM_001109749, intron 5 of 25)	intron (NM_001109749, intron 5 of 25)	160850.0	NM_001109751	269784.0	Mm.321683	NM_173004	ENSMUSG00000064293	Cntn4	9630050B05|Axcam|BIG-2	contactin 4	protein-coding	0.0	5.5	0.0	14.0	4.0	6.0
Merged-chr15-78984061-2	chr15	78983561	78984561	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024716, intron 1 of 13)	intron (NM_001024716, intron 1 of 13)	1005.0	NM_001024716	110253.0	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57535000-1	chr16	57534500	57535500	+	611.0	f0_balb.idr	intron (NM_001040397, intron 4 of 4)	MER58B|DNA|hAT-Charlie	-14242.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39381330-2	chr1	39380830	39381830	+	611.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357522, exon 12 of 19)	exon (NM_001357522, exon 12 of 19)	13479.0	NM_001252218	114641.0	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52900537-2	chr2	52900037	52901037	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	42669.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109312386-2	chr11	109311886	109312886	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14205.0	NM_011268	19739.0	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115522759-1	chr5	115522259	115523259	+	611.0	f1_balb.idr	intron (NM_011223, intron 1 of 10)	PB1|SINE|Alu	16083.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	19.5	21.0	21.5	14.5	17.0	9.5
Merged-chr12-8349197-1	chr12	8348697	8349697	+	611.0	f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	35764.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0.0	0.0	0.5	0.0	0.0	1.5
Merged-chr6-99685124-2	chr6	99684624	99685624	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7243.0	NM_008158	14761.0	Mm.394313	NM_008158	ENSMUSG00000072875	Gpr27	-	G protein-coupled receptor 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40762068-1	chr9	40761568	40762568	+	611.0	f0_balb.idr	intron (NM_133733, intron 2 of 6)	intron (NM_133733, intron 2 of 6)	-39205.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	28.0	21.0	31.5	39.0	151.5	81.0
Merged-chr10-62512089-2	chr10	62511589	62512589	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 1 of 3)	B1_Mur2|SINE|Alu	-4332.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-16575548-5	chr14	16575078	16576078	+	610.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011243)	promoter-TSS (NM_011243)	-102.0	NM_001289762	218772.0	Mm.259318	NM_011243	ENSMUSG00000017491	Rarb	A830025K23|Hap|Nr1b2	retinoic acid receptor, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65303797-3	chr9	65303291	65304291	+	610.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001044389, intron 3 of 12)	MTEb|LTR|ERVL-MaLR	9531.0	NM_001044389	270166.0	Mm.30088	NM_011802	ENSMUSG00000015357	Clpx	AU014732|E330029I21	caseinolytic mitochondrial matrix peptidase chaperone subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117495256-2	chr4	117494756	117495756	+	610.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025739, intron 1 of 14)	CpG	1796.0	NM_025739	66743.0	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-36371730-3	chr19	36371207	36372207	+	610.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7360.0	NM_029508	76073.0	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	0.5	0.0	0.0	0.5	0.0	0.0
Merged-chr10-99251392-2	chr10	99250892	99251892	+	610.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11839.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103488451-3	chr15	103487937	103488937	+	610.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153505, intron 26 of 30)	intron (NM_153505, intron 26 of 30)	-14597.0	NM_008800	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0.0	2.0	1.5	0.0	0.5	1.5
Merged-chr11-120005672-2	chr11	120005172	120006172	+	610.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037755, intron 13 of 13)	intron (NM_001037755, intron 13 of 13)	-9095.0	NR_037225	100526518.0		NR_037225	ENSMUSG00000105524	Mir3065	mir-3065|mmu-mir-3065	microRNA 3065	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4451433-2	chr11	4450933	4451933	+	610.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10351.0	NM_029458	75828.0	Mm.159592	NM_029458	ENSMUSG00000020419	Hormad2	4930529M09Rik	HORMA domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120469107-2	chr1	120468609	120469609	+	610.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35915.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0.0	4.0	0.0	0.0	4.0	4.0
Merged-chr8-83716742-2	chr8	83716242	83717242	+	610.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_197982, intron 1 of 10)	intron (NM_197982, intron 1 of 10)	1565.0	NM_197982	68278.0	Mm.28222	NM_197982	ENSMUSG00000005481	Ddx39	2610307C23Rik|BAT1|DDXL|Ddx39a|URH49	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	protein-coding	4.0	2.5	17.0	13.5	0.0	2.5
Merged-chr15-77764958-2	chr15	77764458	77765458	+	610.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 35 of 40)	B1_Mus2|SINE|Alu	-7948.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.0	1.0	0.5	1.5	2.0	0.0
Merged-chr13-37893816-1	chr13	37893316	37894316	+	610.666687	f0_balb.idr	non-coding (NR_033615, exon 4 of 10)	non-coding (NR_033615, exon 4 of 10)	4945.0	NM_001177869	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-151941363-3	chr2	151940856	151941856	+	610.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009641, intron 7 of 8)	intron (NM_009641, intron 7 of 8)	26261.0	NR_035478	100316704.0		NR_035478	ENSMUSG00000088491	Mir1953	mir-1953|mmu-mir-1953	microRNA 1953	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113549608-2	chr13	113549108	113550108	+	610.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-46764.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66095760-2	chr5	66095252	66096252	+	610.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	2427.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	7.0	2.0	5.5	6.5	1.0	1.0
Merged-chr16-76416599-4	chr16	76416098	76417098	+	610.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-42771.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36792847-2	chr5	36792347	36793347	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3907.0	NM_026242	67568.0	Mm.332336	NM_026242	ENSMUSG00000055302	Mrfap1	9130413I22Rik|AL022827|Pam14	Morf4 family associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-57731554-2	chr3	57731054	57732054	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4503.0	NM_011883	24017.0	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-31213414-2	chr9	31212914	31213914	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-1566.0	NM_001102456	11804.0	Mm.19133	NM_009691	ENSMUSG00000031996	Aplp2	AI790698|APLP-2|CDEBP	amyloid beta (A4) precursor-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91213461-2	chr2	91212961	91213961	+	610.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007387, exon 11 of 11)	3' UTR (NM_007387, exon 11 of 11)	10549.0	NM_007387	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119495123-2	chr13	119494623	119495623	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177666, intron 2 of 3)	intron (NM_001177666, intron 2 of 3)	6263.0	NM_001177666	633640.0	Mm.46679	NM_001039244	ENSMUSG00000074634	Tmem267	EG633640|Gm7120	transmembrane protein 267	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-100919686-2	chr3	100919186	100920186	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2807.0	NM_001165952	229644.0	Mm.189351	NM_194343	ENSMUSG00000033233	Trim45	4921530N01Rik	tripartite motif-containing 45	protein-coding	0.0	0.0	4.5	0.0	0.0	0.0
Merged-chr3-59132077-2	chr3	59131577	59132577	+	610.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287123)	promoter-TSS (NM_001287123)	385.0	NM_001287120	140795.0	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115609105-2	chr11	115608605	115609605	+	610.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_027162, exon 4 of 5)	exon (NM_027162, exon 4 of 5)	3398.0	NM_027162	69674.0	Mm.390387	NM_027162	ENSMUSG00000020743	Mif4gd	1110014L05Rik|2310075G12Rik	MIF4G domain containing	protein-coding	0.5	0.0	0.5	0.0	1.0	0.0
Merged-chr10-111071912-2	chr10	111071412	111072412	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-61846.0	NM_172554	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	1.5	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99204254-2	chr10	99203754	99204754	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58977.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18936268-2	chr2	18935768	18936768	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	61853.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112243375-2	chr5	112242875	112243875	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9143.0	NM_001312884	12959.0	Mm.40324	NM_021351	ENSMUSG00000066975	Cryba4	-	crystallin, beta A4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30606200-2	chr2	30605700	30606700	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030137, intron 1 of 1)	intron (NM_030137, intron 1 of 1)	11156.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-50243665-2	chr19	50243165	50244165	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360457, intron 9 of 26)	intron (NM_001360457, intron 9 of 26)	434981.0	NM_001252501	58178.0	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114674357-2	chr5	114673857	114674857	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019821, intron 3 of 4)	intron (NM_019821, intron 3 of 4)	-15936.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112330874-2	chr5	112330374	112331374	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018783, intron 5 of 13)	intron (NM_018783, intron 5 of 13)	4505.0	NM_018783	54723.0	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	5.5	1.5	3.0	0.0	1.0	1.0
Merged-chr6-29849762-2	chr6	29849262	29850262	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	ORR1F|LTR|ERVL-MaLR	-3979.0	NM_001347084	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3577971-2	chr19	3577471	3578471	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2222.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55688362-2	chr19	55687833	55688833	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	13871.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	17.5	89.0	26.5	8.5	27.5	19.5
Merged-chr3-103123872-2	chr3	103123372	103124372	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3684.0	NM_177857	329727.0	Mm.293641	NM_177857	ENSMUSG00000007379	Dennd2c	A930010I20Rik	DENN/MADD domain containing 2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88820717-2	chr15	88820217	88821217	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029720, intron 3 of 9)	intron (NM_029720, intron 3 of 9)	1071.0	NM_029720	76737.0	Mm.292567	NM_029720	ENSMUSG00000023272	Creld2	5730592L21Rik|C85758	cysteine-rich with EGF-like domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5437764-2	chr2	5437264	5438264	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_030601, intron 1 of 1)	intron (NR_030601, intron 1 of 1)	58374.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38375285-2	chr2	38374785	38375785	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23977.0	NM_010710	16870.0	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-143209464-2	chr4	143208964	143209964	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001256380, intron 1 of 7)	intron (NM_001256380, intron 1 of 7)	3245.0	NM_001081355	110593.0	Mm.332020	NM_001081355	ENSMUSG00000057637	Prdm2	4833427P12Rik|E330024L24Rik|Gm1033|Gm19732|KMT8|Riz|Riz1|Znfpr1c1	PR domain containing 2, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-48134110-2	chr12	48133610	48134610	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-1248773.0	NM_001160112	15228.0	Mm.4704	NM_008241	ENSMUSG00000020950	Foxg1	2900064B05Rik|BF-1|Bf1|Hfh9|Hfhbf1	forkhead box G1	protein-coding	2.5	0.0	1.0	0.0	0.0	0.5
Merged-chr11-115171457-2	chr11	115170957	115171957	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_012030, intron 1 of 5)	intron (NM_012030, intron 1 of 5)	8116.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	0.5	13.5	0.5	1.5	8.0	2.0
Merged-chr10-44267861-2	chr10	44267361	44268361	+	610.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053069)	promoter-TSS (NM_053069)	-478.0	NM_001314013	11793.0	Mm.22264	NM_053069	ENSMUSG00000038160	Atg5	2010107M05Rik|3110067M24Rik|AW319544|Apg5l|Atg5l|C88337|Paddy	autophagy related 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9392005-2	chr13	9391505	9392505	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	115480.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127174117-2	chr10	127173617	127174617	+	610.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_177615, exon 12 of 17)	exon (NM_177615, exon 12 of 17)	6528.0	NM_177615	216441.0	Mm.248373	NM_177615	ENSMUSG00000040441	Slc26a10	C78409|D630010I07	solute carrier family 26, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7185440-2	chr9	7184940	7185940	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029775, intron 1 of 7)	intron (NM_029775, intron 1 of 7)	935.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23903497-2	chr18	23902997	23903997	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51191.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148482894-2	chr5	148482394	148483394	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	68779.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69514103-2	chr11	69513603	69514603	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 12 of 85)	intron (NM_001081330, intron 12 of 85)	35005.0	NM_001081330	327954.0	Mm.247478	NM_177617	ENSMUSG00000005237	Dnah2	2900022L05Rik|4930564A01|D130094J20|D330014H01Rik|Dnahc2|Dnhd3	dynein, axonemal, heavy chain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83392108-2	chr6	83391608	83392608	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347313, intron 4 of 11)	MIRb|SINE|MIR	8994.0	NR_105793	102465194.0		NR_105793	ENSMUSG00000099045	Mir6374	Gm27292|mmu-mir-6374	microRNA 6374	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4102934-2	chr19	4102434	4103434	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008851, intron 2 of 22)	intron (NM_008851, intron 2 of 22)	2312.0	NM_008851	18739.0	Mm.1860	NM_008851	ENSMUSG00000024851	Pitpnm1	DRES9|Mpt-1|Nir-2|PITPnm 1|Pitpnm|R75447|Rd9|RdgB|RdgB1	phosphatidylinositol transfer protein, membrane-associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75739263-2	chr10	75738763	75739763	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172549, intron 14 of 36)	intron (NM_172549, intron 14 of 36)	25094.0	NM_172549	104248.0	Mm.257404	NM_172549	ENSMUSG00000020196	Cabin1	A330070M20Rik|Cain|Ppp3in	calcineurin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-11905504-2	chr15	11905004	11906004	+	610.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008728, exon 1 of 8)	exon (NM_008728, exon 1 of 8)	170.0	NM_008728	18162.0	Mm.25259	NM_008728	ENSMUSG00000022206	Npr3	ANP-C|ANPR-C|EF-2|NPR-C|lgj|stri	natriuretic peptide receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25456227-2	chr14	25455727	25456727	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2958.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114118304-2	chr7	114117804	114118804	+	610.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025846)	promoter-TSS (NM_025846)	-523.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	0.0	4.0	1.0	0.0	1.5	4.0
Merged-chr12-54566799-2	chr12	54566299	54567299	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER44D|DNA|TcMar-Tigger	79213.0	NR_035439	100316682.0		NR_035439	ENSMUSG00000106344	Mir1892	Mirn1892|mir-1892|mmu-mir-1892	microRNA 1892	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36144568-2	chr17	36144068	36145068	+	610.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033517)	promoter-TSS (NR_033517)	-450.0	NR_033517	675325.0	Mm.75890	NR_033517	ENSMUSG00000038311	2410017I17Rik	-	RIKEN cDNA 2410017I17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11474520-2	chr8	11474020	11475020	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	B3|SINE|B2	-3409.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-37687565-2	chr3	37687065	37688065	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36795.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-138142029-2	chr6	138141529	138142529	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347489, intron 1 of 3)	intron (NM_001347489, intron 1 of 3)	442.0	NM_001361309	56615.0	Mm.14796	NM_019946	ENSMUSG00000008540	Mgst1	1500002K10Rik|Gst	microsomal glutathione S-transferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67447711-2	chr18	67447211	67448211	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027130, intron 1 of 16)	intron (NM_027130, intron 1 of 16)	1425.0	NM_027130	69597.0	Mm.426052	NM_027130	ENSMUSG00000024527	Afg3l2	2310036I02Rik|AW260507|Emv66|par	AFG3-like AAA ATPase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10987259-2	chr16	10986759	10987759	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	ID_B1|SINE|B4	5862.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38882240-2	chr6	38881740	38882740	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6050.0	NM_001294143	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90890240-2	chr5	90889740	90890740	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1005.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0.0	0.0	0.0	1.5	5.5	2.5
Merged-chr5-127588108-2	chr5	127587608	127588608	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	29284.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-137851658-2	chr1	137851158	137852158	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-114797.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91542659-2	chr16	91542159	91543159	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4435.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-36525034-2	chr11	36524534	36525534	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011856, intron 2 of 28)	intron (NM_011856, intron 2 of 28)	419207.0	NM_001290702	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.0	0.5	0.5	0.0	0.5	6.5
Merged-chr12-82327587-2	chr12	82327087	82328087	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 4 of 23)	(CAAAAA)n|Simple_repeat|Simple_repeat	16238.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-11904528-2	chr15	11904028	11905028	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286395, intron 2 of 8)	CpG	1146.0	NM_008728	18162.0	Mm.25259	NM_008728	ENSMUSG00000022206	Npr3	ANP-C|ANPR-C|EF-2|NPR-C|lgj|stri	natriuretic peptide receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59731464-2	chr15	59730964	59731964	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63495.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.0	3.0	0.0	0.0	9.0	0.0
Merged-chr2-36011441-2	chr2	36010941	36011941	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-31817.0	NM_029774	74410.0	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137525543-2	chr5	137525043	137526043	+	610.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_031408, exon 23 of 24)	exon (NM_031408, exon 23 of 24)	4051.0	NR_105846	102465227.0		NR_105846	ENSMUSG00000098597	Mir6418	Gm27629|mir-6418|mmu-mir-6418	microRNA 6418	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-85000562-2	chr2	85000062	85001062	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145526, intron 9 of 11)	intron (NM_145526, intron 9 of 11)	12347.0	NM_016914	53856.0	Mm.19943	NM_016914	ENSMUSG00000027072	Prg3	MBP2|MBPH	proteoglycan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125475301-2	chr5	125474801	125475801	+	610.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030210)	promoter-TSS (NM_030210)	-572.0	NM_030210	78894.0	Mm.431573	NM_030210	ENSMUSG00000029482	Aacs	2210408B16Rik|SUR5	acetoacetyl-CoA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39049558-2	chr6	39049058	39050058	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 9 of 12)	MIRb|SINE|MIR	18028.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-40019221-2	chr17	40018721	40019721	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	68701.0	NM_001256051	100126775.0	Mm.471585	NM_001256051	ENSMUSG00000095886	Esp38	Gm21946	exocrine gland secreted peptide 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31395755-2	chr14	31395255	31396255	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	21922.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3902194-2	chr12	3901694	3902694	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 12 of 17)	intron (NM_153743, intron 12 of 17)	10450.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-18948584-2	chr8	18948084	18949084	+	610.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001286469, exon 2 of 7)	exon (NM_001286469, exon 2 of 7)	2287.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95628624-2	chr3	95628136	95629136	+	610.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_019561, exon 3 of 4)	exon (NM_019561, exon 3 of 4)	3656.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-54799906-2	chr15	54799406	54800406	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53978.0	NM_010930	18133.0	Mm.5167	NM_010930	ENSMUSG00000037362	Nov	C130088N23Rik|CCN3	nephroblastoma overexpressed gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-24996935-2	chr19	24996435	24997435	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2594.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	31.5	130.5	92.0	16.5	44.5	36.0
Merged-chr8-81010528-2	chr8	81010022	81011022	+	610.375	f0_c57.idr|f1_c57bl6.idr	intron (NM_027554, intron 2 of 9)	Tigger5|DNA|TcMar-Tigger	4384.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	8.0	11.5	8.5	4.5	7.5	2.0
Merged-chr8-94175086-2	chr8	94174586	94175586	+	610.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2468.0	NM_008630	17750.0	Mm.147226	NM_008630	ENSMUSG00000031762	Mt2	AA409533|MT-II|Mt-2	metallothionein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56675216-3	chr18	56674724	56675724	+	610.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32589.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76322486-2	chr14	76321986	76322986	+	610.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71024.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-104968063-2	chr12	104967563	104968563	+	610.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_172500, exon 3 of 17)	exon (NM_172500, exon 3 of 17)	30614.0	NM_001042699	212073.0	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	KASH3|nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136247856-2	chr4	136247355	136248355	+	610.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011542)	promoter-TSS (NM_011542)	-102.0	NM_011542	21401.0	Mm.112	NM_011542	ENSMUSG00000001604	Tcea3	S-II|SII-K1	transcription elongation factor A (SII), 3	protein-coding	0.0	9.0	0.0	0.0	0.5	0.0
Merged-chr12-76903921-2	chr12	76903421	76904421	+	610.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_145927, intron 7 of 11)	MTE2a|LTR|ERVL-MaLR	58327.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119043223-2	chr11	119042723	119043723	+	610.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2310.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90632111-2	chr2	90631611	90632611	+	610.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45104.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38251254-2	chr18	38250754	38251754	+	610.166687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027904)	promoter-TSS (NR_027904)	-689.0	NR_027904	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50751000-2	chr17	50750500	50751500	+	610.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 19 of 21)	intron (NM_028162, intron 19 of 21)	52319.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	0.0	4.0	4.0	0.0	4.0	2.5
Merged-chr5-118246170-3	chr5	118245683	118246683	+	610.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081236, intron 1 of 4)	intron (NM_001081236, intron 1 of 4)	956.0	NM_001081236	76792.0	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	0.0	1.5	6.0	0.0	8.0	2.0
Merged-chr17-25301868-2	chr17	25301382	25302382	+	610.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	3488.0	NM_178372	328780.0	Mm.127166	NM_178372	ENSMUSG00000056399	Prss34	C130091P12|Mcp11|mMcp-11	protease, serine 34	protein-coding	0.0	2.0	3.5	1.5	22.0	2.0
Merged-chr12-4702304-2	chr12	4701804	4702804	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011365, intron 31 of 38)	RLTR33|LTR|ERVK	36079.0	NM_029107	74855.0	Mm.269534	NM_029107	ENSMUSG00000079177	Fam228a	4930417G10Rik	family with sequence similarity 228, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10355763-1	chr17	10355263	10356263	+	610.0	f0_balb.idr	Intergenic	B4|SINE|B4	31161.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-15266607-1	chr4	15266107	15267107	+	610.0	f0_balb.idr	exon (NM_181401, exon 1 of 3)	exon (NM_181401, exon 1 of 3)	787.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-91651686-1	chr15	91651186	91652186	+	610.0	f0_balb.idr	Intergenic	Intergenic	-21538.0	NM_025730	66725.0	Mm.37558	NM_025730	ENSMUSG00000036273	Lrrk2	4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46	leucine-rich repeat kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31154328-2	chr14	31153828	31154828	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138672, intron 25 of 68)	intron (NM_138672, intron 25 of 68)	14313.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132160869-2	chr1	132160369	132161369	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21184.0	NM_008795	18557.0	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103982421-2	chr2	103981912	103982912	+	610.0	f0_balb.idr|f0_c57.idr	TTS (NM_001142337)	TTS (NM_001142337)	12125.0	NM_001142335	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67307879-1	chr18	67307379	67308379	+	610.0	f1_c57bl6.idr	intron (NM_053261, intron 3 of 7)	intron (NM_053261, intron 3 of 7)	18656.0	NM_053261	114663.0	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	12.5	0.5	1.5	2.0	0.5	3.5
Merged-chr9-25559069-2	chr9	25558569	25559569	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 3 of 7)	RLTR31B2|LTR|ERVK	77472.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-55961438-2	chr17	55960938	55961938	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028381, intron 2 of 7)	ORR1C2|LTR|ERVL-MaLR	-2037.0	NR_108021	100504333.0	Mm.391908	NR_108021	ENSMUSG00000097077	Gm16712	-	predicted gene, 16712	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135351296-2	chr4	135350796	135351796	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016799, intron 1 of 17)	B1_Mur4|SINE|Alu	1918.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-66116157-2	chr17	66115657	66116657	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026833, intron 4 of 10)	intron (NM_026833, intron 4 of 10)	4512.0	NM_001037757	68767.0	Mm.296545	NM_026833	ENSMUSG00000024101	Washc1	1110049F14Rik|ORF19|Wash|Wash1	WASH complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80091742-1	chr15	80091242	80092242	+	610.0	f1_balb.idr	intron (NM_207708, intron 1 of 3)	CpG	408.0	NM_207708	20972.0	Mm.230301	NM_009303	ENSMUSG00000022415	Syngr1	R75468|Syngr1b|p29	synaptogyrin 1	protein-coding	0.0	0.0	2.0	8.0	0.0	1.0
Merged-chr5-43892573-1	chr5	43892073	43893073	+	610.0	f0_balb.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	23764.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19161838-2	chr3	19161338	19162338	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357689, intron 1 of 6)	intron (NM_001357689, intron 1 of 6)	1257.0	NM_028840	74252.0	Mm.200383	NM_028840	ENSMUSG00000027599	Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-32867782-2	chr3	32867282	32868282	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013024, intron 6 of 20)	intron (NM_001013024, intron 6 of 20)	50156.0	NM_001013024	72607.0	Mm.316153	NM_001013024	ENSMUSG00000056900	Usp13	2700071E21Rik|AI848077|ISOT3|IsoT-3	ubiquitin specific peptidase 13 (isopeptidase T-3)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12661336-1	chr18	12660836	12661836	+	610.0	f0_balb.idr	intron (NM_028341, intron 1 of 13)	intron (NM_028341, intron 1 of 13)	17803.0	NM_028341	72747.0	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-60710403-1	chr19	60709903	60710903	+	610.0	f1_balb.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-45584.0	NM_178421	332397.0	Mm.186390	NM_178421	ENSMUSG00000072437	Nanos1	NOS-1	nanos C2HC-type zinc finger 1	protein-coding	3.0	0.0	0.0	0.0	0.0	6.5
Merged-chr2-91925350-1	chr2	91924850	91925850	+	610.0	f0_balb.idr	intron (NM_007699, intron 1 of 1)	intron (NM_007699, intron 1 of 1)	3161.0	NM_007699	12672.0	Mm.330405	NM_007699	ENSMUSG00000040495	Chrm4	Chrm-4|M4	cholinergic receptor, muscarinic 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102409269-1	chr11	102408769	102409769	+	610.0	f0_balb.idr	Intergenic	B1F|SINE|Alu	-1752.0	NM_026542	68066.0	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72892823-2	chr6	72892323	72893323	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019715, intron 1 of 6)	B2_Mm2|SINE|B2	6469.0	NM_001347231	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-17632002-1	chr14	17631502	17632502	+	610.0	f0_balb.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-28958.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49241722-2	chr11	49241222	49242222	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2469.0	NM_010794	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33900251-1	chr17	33899751	33900751	+	610.0	f1_balb.idr	Intergenic	RLTR41A2|LTR|ERV1	-4884.0	NR_040470	474160.0	Mm.206186	NR_040470	ENSMUSG00000092349	Platr17	-	pluripotency associated transcript 17	ncRNA	12.5	5.5	9.5	6.5	5.5	4.5
Merged-chr5-75148880-1	chr5	75148380	75149380	+	610.0	f1_c57bl6.idr	Intergenic	Intergenic	-3371.0	NR_144636	18595.0	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	11.0	0.0	0.0	1.5	0.0	0.5
Merged-chr4-43899419-1	chr4	43898919	43899919	+	610.0	f1_c57bl6.idr	intron (NM_016678, intron 5 of 20)	intron (NM_016678, intron 5 of 20)	23889.0	NM_016678	53614.0	Mm.331573	NM_016678	ENSMUSG00000028476	Reck	St15|mRECK	reversion-inducing-cysteine-rich protein with kazal motifs	protein-coding	1.5	2.5	2.0	1.0	9.0	2.5
Merged-chr9-14175205-2	chr9	14174705	14175705	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101096.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119065167-1	chr9	119064667	119065667	+	610.0	f1_balb.idr	intron (NM_011700, intron 11 of 18)	intron (NM_011700, intron 11 of 18)	12389.0	NM_001164567	22351.0	Mm.83817	NM_011700	ENSMUSG00000038775	Vill	Villp	villin-like	protein-coding	1.5	17.0	5.5	7.5	4.5	1.5
Merged-chr12-103309640-2	chr12	103309140	103310140	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	5129.0	NR_136894	102632488.0	Mm.109435	NR_136894	ENSMUSG00000100789	Gm29508	-	predicted gene 29508	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72489548-1	chr8	72489048	72490048	+	610.0	f1_c57bl6.idr	exon (NM_177766, exon 3 of 6)	exon (NM_177766, exon 3 of 6)	3066.0	NM_177766	270066.0	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	12.0	0.0	0.5	0.0	0.0	3.0
Merged-chr5-29781494-2	chr5	29780994	29781994	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037940, intron 9 of 9)	intron (NM_001037940, intron 9 of 9)	-45558.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-110442439-1	chr13	110441939	110442939	+	610.0	f0_balb.idr	Intergenic	Intergenic	47395.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr1-191446067-2	chr1	191445610	191446610	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151615, intron 2 of 5)	MTEb|LTR|ERVL-MaLR	18938.0	NR_151615	102634668.0		NR_151615		Gm32200	-	predicted gene, 32200	ncRNA	0.0	0.5	0.0	0.5	0.0	4.5
Merged-chr15-89323917-2	chr15	89323417	89324417	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_182928, intron 2 of 2)	intron (NM_182928, intron 2 of 2)	1197.0	NM_182928	223780.0	Mm.210541	NM_182928	ENSMUSG00000054136	Adm2	Am2|IMD|Imdn	adrenomedullin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-37478204-2	chr3	37477704	37478704	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021343, intron 14 of 15)	intron (NM_021343, intron 14 of 15)	58254.0	NM_021343	57815.0	Mm.172679	NM_021343	ENSMUSG00000027722	Spata5	2510048F20Rik|C78064|Spaf	spermatogenesis associated 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-69867059-2	chr15	69866559	69867559	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-57174.0	NR_045071	100503580.0	Mm.404646	NR_045071	ENSMUSG00000116483	Gm19782	-	predicted gene, 19782	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16431093-2	chr7	16430593	16431593	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198631, intron 12 of 13)	intron (NM_198631, intron 12 of 13)	-21686.0	NM_026938	69094.0	Mm.29633	NM_026938	ENSMUSG00000019158	Tmem160	1810008O21Rik	transmembrane protein 160	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99497617-2	chr5	99497117	99498117	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	231443.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	3.5	1.5	2.5	3.5	2.5	0.5
Merged-chr15-6523732-2	chr15	6523232	6524232	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56115.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43079826-2	chr17	43079326	43080326	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 4 of 5)	intron (NM_178589, intron 4 of 5)	63271.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	0.0	2.0	2.5	0.0	4.5	3.5
Merged-chr7-104397461-2	chr7	104396995	104397995	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV-int|LTR|ERVK	-38849.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	3.0	5.0	3.0	1.0	27.5	8.0
Merged-chr6-53958560-1	chr6	53958060	53959060	+	610.0	f0_balb.idr	intron (NM_027749, intron 3 of 12)	G-rich|Low_complexity|Low_complexity	20113.0	NM_027749	71287.0	Mm.158654	NM_027749	ENSMUSG00000052955	Cpvl	4933436L16Rik|HVLP	carboxypeptidase, vitellogenic-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87702856-2	chr16	87702356	87703356	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	3902.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	4.5	3.5	0.5	3.5	3.0	0.5
Merged-chr4-130101552-2	chr4	130101052	130102052	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6004.0	NM_026441	67898.0	Mm.20818	NM_026441	ENSMUSG00000028779	Pef1	2600002E23Rik|Peflin	penta-EF hand domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-100392389-1	chr8	100391889	100392889	+	610.0	f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	975715.0	NR_132435	234624.0	Mm.124595	NM_175479	ENSMUSG00000052479	A330008L17Rik	-	RIKEN cDNA A330008L17 gene	ncRNA	0.0	0.0	1.0	0.0	0.0	2.5
Merged-chr15-64301491-1	chr15	64300991	64301991	+	610.0	f0_balb.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	11182.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3326960-2	chr19	3326460	3327460	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 1 of 18)	intron (NM_013495, intron 1 of 18)	3659.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5008154-1	chr11	5007654	5008654	+	610.0	f0_balb.idr	intron (NM_001243044, intron 1 of 21)	intron (NM_001243044, intron 1 of 21)	21330.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90127596-1	chr7	90127096	90128096	+	610.0	f1_c57bl6.idr	intron (NR_046007, intron 1 of 2)	intron (NR_046007, intron 1 of 2)	1878.0	NR_046006	78329.0	Mm.389940	NR_046006	ENSMUSG00000097162	2310010J17Rik	-	RIKEN cDNA 2310010J17 gene	ncRNA	17.5	3.0	0.0	3.0	2.0	7.0
Merged-chr15-91573091-2	chr15	91572591	91573591	+	610.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033633, exon 1 of 10)	exon (NM_001033633, exon 1 of 10)	170.0	NM_001033633	239606.0	Mm.360596	NM_001033633	ENSMUSG00000036298	Slc2a13	6530403A04|A630029G22Rik|AI505012|Gm308	solute carrier family 2 (facilitated glucose transporter), member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166112510-2	chr2	166112010	166113010	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252579, intron 3 of 20)	L2a|LINE|L2	42775.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-84606608-1	chr7	84606108	84607108	+	610.0	f0_balb.idr	promoter-TSS (NM_010176)	promoter-TSS (NM_010176)	-666.0	NM_010176	14085.0	Mm.3798	NM_010176	ENSMUSG00000030630	Fah	swst	fumarylacetoacetate hydrolase	protein-coding	2.0	2.0	0.0	4.0	9.5	4.5
Merged-chr7-74696534-1	chr7	74696034	74697034	+	610.0	f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-141754.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	2.0	17.0	14.0	20.5	12.5	10.5
Merged-chr6-13463456-1	chr6	13462956	13463956	+	610.0	f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	50119.0	NR_038149	69413.0	Mm.177847	NR_038149	ENSMUSG00000101894	1700016P04Rik	-	RIKEN cDNA 1700016P04 gene	ncRNA	3.0	3.5	0.0	2.0	3.0	0.0
Merged-chr17-21567832-1	chr17	21567332	21568332	+	610.0	f1_c57bl6.idr	intron (NM_001002008, intron 1 of 5)	Lx5b|LINE|L1	854.0	NM_001357347	381066.0	Mm.441097	NM_001002008	ENSMUSG00000067931	Zfp948	-	zinc finger protein 948	protein-coding	3.0	8.5	2.5	0.0	4.5	7.0
Merged-chr9-74142074-1	chr9	74141574	74142574	+	610.0	f0_balb.idr	intron (NM_001033500, intron 3 of 19)	MER20|DNA|hAT-Charlie	31740.0	NM_001033500	546144.0	Mm.335289	NM_177908	ENSMUSG00000044976	Wdr72	AW558070|D230040E23	WD repeat domain 72	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107547089-2	chr11	107546589	107547589	+	610.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198298)	promoter-TSS (NM_198298)	-871.0	NM_198298	78455.0	Mm.272047	NM_198298	ENSMUSG00000020721	Helz	3110078M01Rik|9430093I07Rik|9630002H22Rik|AI851979|DRHC	helicase with zinc finger domain	protein-coding	0.0	6.5	1.0	0.0	0.0	0.0
Merged-chr7-90204141-2	chr7	90203641	90204641	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 19 of 19)	intron (NM_001360867, intron 19 of 19)	61291.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	0.0	1.0	0.0	0.0	0.0	0.5
Merged-chr15-72914134-2	chr15	72913634	72914634	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029640, intron 15 of 21)	intron (NM_029640, intron 15 of 21)	-103810.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34078504-2	chr17	34078004	34079004	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13875.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	2.0	20.0	16.5	2.0	10.5	16.0
Merged-chr1-51526008-2	chr1	51525508	51526508	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151621, intron 3 of 3)	intron (NR_151621, intron 3 of 3)	-47609.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25921939-2	chr15	25921439	25922439	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 3 of 8)	intron (NM_001034851, intron 3 of 8)	-11613.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109115132-2	chr4	109114632	109115632	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355190, intron 2 of 21)	RMER10A|LTR|ERVL	2904.0	NM_173350	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151617863-2	chr1	151617363	151618363	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	Lx2B2|LINE|L1	46490.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90305518-1	chr3	90305018	90306018	+	610.0	f1_balb.idr	Intergenic	Intergenic	35369.0	NR_105979	102465612.0		NR_105979	ENSMUSG00000099199	Mir7012	Gm27370|mmu-mir-7012	microRNA 7012	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152481778-2	chr3	152481278	152482278	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081277, intron 10 of 13)	intron (NM_001081277, intron 10 of 13)	85094.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21267277-1	chr5	21266777	21267777	+	610.0	f0_balb.idr	intron (NR_153365, intron 18 of 26)	Lx8|LINE|L1	81010.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62415412-2	chr9	62414912	62415912	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74069.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31500890-2	chr6	31500390	31501390	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013791, intron 17 of 17)	L1MA4|LINE|L1	63047.0	NM_013723	27205.0	Mm.89918	NM_013723	ENSMUSG00000025608	Podxl	AW121214|Ly102|PC|PCLP-1|Pclp1|Podxl1	podocalyxin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112608403-2	chr12	112607903	112608903	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198411, intron 14 of 22)	intron (NM_198411, intron 14 of 22)	-11644.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106221062-1	chr1	106220562	106221562	+	610.0	f0_balb.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	49193.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44990855-2	chr19	44990355	44991355	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011976, intron 1 of 14)	intron (NM_011976, intron 1 of 14)	1511.0	NM_011976	26456.0	Mm.34404	NM_011976	ENSMUSG00000025207	Sema4g	AI507908|AW554132	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-91882248-2	chr13	91881748	91882748	+	610.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009027, exon 15 of 15)	3' UTR (NM_009027, exon 15 of 15)	-5363.0	NM_198415	76722.0	Mm.316438	NM_198415	ENSMUSG00000021622	Ckmt2	2300008A19Rik|ScCKmit	creatine kinase, mitochondrial 2	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr7-101554321-2	chr7	101553821	101554821	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007490, intron 2 of 2)	intron (NM_007490, intron 2 of 2)	1481.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	0.0	1.0	0.5	0.0	2.0	1.5
Merged-chr19-34553148-1	chr19	34552648	34553648	+	610.0	f0_balb.idr	intron (NM_001355262, intron 1 of 2)	intron (NM_001355262, intron 1 of 2)	2060.0	NM_001355262	15958.0	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66434897-2	chr7	66434397	66435397	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7420.0	NM_053080	56847.0	Mm.140988	NM_053080	ENSMUSG00000015134	Aldh1a3	ALDH6|RALDH3|V1	aldehyde dehydrogenase family 1, subfamily A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79691903-2	chr2	79691403	79692403	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15877.0	NM_172420	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123572252-2	chr5	123571752	123572752	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359513, intron 1 of 11)	B1_Mus1|SINE|Alu	763.0	NM_001359513	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	0.0	5.5	2.5	0.0	0.5	1.0
Merged-chr18-60753703-2	chr18	60753203	60754203	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-5038.0	NM_008306	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0.0	0.0	0.0	0.0	6.5	2.0
Merged-chr16-19975582-2	chr16	19975082	19976082	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183390, intron 1 of 6)	intron (NM_183390, intron 1 of 6)	7467.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6784361-2	chr17	6783861	6784861	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1581.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57368260-2	chr17	57367760	57368760	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 2 of 22)	Lx5b|LINE|L1	9574.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59306955-3	chr11	59306458	59307458	+	610.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139298)	promoter-TSS (NM_139298)	28.0	NM_139298	216795.0	Mm.218794	NM_139298	ENSMUSG00000000126	Wnt9a	Wnt14	wingless-type MMTV integration site family, member 9A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72102171-2	chr6	72101671	72102671	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	4563.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-34688324-2	chr12	34687824	34688824	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-159435.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	11.5	17.0	11.0	10.0	16.5	11.5
Merged-chr9-21004002-2	chr9	21003502	21004502	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357899, intron 3 of 8)	ID_B1|SINE|B4	1265.0	NM_001357899	66163.0	Mm.427576	NM_023167	ENSMUSG00000003299	Mrpl4	1110017G11Rik	mitochondrial ribosomal protein L4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90205816-2	chr7	90205316	90206316	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 19 of 19)	intron (NM_001360867, intron 19 of 19)	59616.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	6.5	0.0	2.0	4.5	0.0	2.5
Merged-chr14-51358128-1	chr14	51357628	51358628	+	610.0	f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-12639.0	NR_045736	75377.0	Mm.402100	NR_045736	ENSMUSG00000115540	4930597G03Rik	-	RIKEN cDNA 4930597G03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113484967-2	chr6	113484467	113485467	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_145485, intron 2 of 9)	B3|SINE|B2	1611.0	NR_145485	171508.0	Mm.41593	NM_133930	ENSMUSG00000030284	Creld1	AI843811|i11E7	cysteine-rich with EGF-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13830739-2	chr16	13830239	13831239	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346109, intron 3 of 7)	intron (NM_001346109, intron 3 of 7)	11488.0	NM_001346111	18203.0	Mm.380410	NM_010946	ENSMUSG00000022681	Ntan1	PNAA|PNAD	N-terminal Asn amidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72741100-2	chr6	72740600	72741600	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001079822, intron 3 of 12)	intron (NM_001079822, intron 3 of 12)	47945.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117025802-2	chr2	117025302	117026302	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95269.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4638312-1	chr11	4637812	4638812	+	610.0	f1_c57bl6.idr	intron (NM_029291, intron 1 of 19)	intron (NM_029291, intron 1 of 19)	519.0	NM_029291	75452.0	Mm.439906	NM_029291	ENSMUSG00000020412	Ascc2	1700011I11Rik|2610034L15Rik|AI482016|ASC1p100|AW046480	activating signal cointegrator 1 complex subunit 2	protein-coding	2.0	15.5	2.5	8.0	24.0	11.0
Merged-chr17-73028322-1	chr17	73027822	73028822	+	610.0	f1_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	-79663.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	9.5	17.5	12.0	9.0	4.5	14.0
Merged-chr5-64485134-2	chr5	64484634	64485634	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	8126.0	NR_045413	77382.0	Mm.366742	NR_045411	ENSMUSG00000105352	C030018K13Rik	-	RIKEN cDNA C030018K13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95131459-1	chr8	95130959	95131959	+	610.0	f0_balb.idr	intron (NM_001145831, intron 3 of 21)	intron (NM_001145831, intron 3 of 21)	11081.0	NM_010631	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	1.5	4.5	3.5	7.0	14.5	5.5
Merged-chr15-34592297-1	chr15	34591797	34592797	+	610.0	f1_balb.idr	intron (NM_145469, intron 6 of 10)	L1_Mus2|LINE|L1	-82776.0	NR_045883	71637.0	Mm.410827	NR_045883	ENSMUSG00000115526	4930413F20Rik	-	RIKEN cDNA 4930413F20 gene	ncRNA	1.5	3.0	2.5	13.5	18.5	4.5
Merged-chr15-31612670-2	chr15	31612170	31613170	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356313, intron 5 of 5)	B2_Mm2|SINE|B2	10554.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93049643-2	chr10	93049148	93050148	+	610.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_001347060, intron 5 of 67)	intron (NM_001347060, intron 5 of 67)	31948.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	1.5	3.5	18.5	4.5	0.0	1.0
Merged-chr13-41828795-1	chr13	41828295	41829295	+	610.0	f0_balb.idr	intron (NM_001145875, intron 1 of 6)	intron (NM_001145875, intron 1 of 6)	18693.0	NM_175417	109254.0	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-104523214-2	chr14	104522714	104523714	+	610.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026047)	promoter-TSS (NM_026047)	-548.0	NM_026047	72486.0	Mm.291811	NM_026047	ENSMUSG00000022120	Rnf219	2610206B13Rik|2810449K13Rik|AI451544	ring finger protein 219	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60133292-2	chr2	60132792	60133792	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-7552.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-10877356-2	chr15	10876856	10877856	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	48305.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43354123-2	chr7	43353623	43354623	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145581, intron 5 of 9)	ID_B1|SINE|B4	2782.0	NM_145581	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120709049-2	chr11	120708549	120709549	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026877, intron 14 of 15)	intron (NM_026877, intron 14 of 15)	4718.0	NM_016665	20892.0	Mm.259716	NM_016665	ENSMUSG00000025144	Cenpx	Stra13	centromere protein X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-44911160-3	chr4	44910657	44911657	+	610.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138590, intron 6 of 8)	intron (NM_138590, intron 6 of 8)	-70237.0	NM_080289	76238.0	Mm.196574	NM_080289	ENSMUSG00000035637	Grhpr	1110059D05Rik|6430629L09Rik|Glxr	glyoxylate reductase/hydroxypyruvate reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81191962-2	chr10	81191462	81192462	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190473, intron 7 of 8)	intron (NM_001190473, intron 7 of 8)	-2729.0	NR_015477	69678.0	Mm.81562	NR_015477		Atcayos	2310050B05Rik	ataxia, cerebellar, Cayman type, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90218881-2	chr9	90218381	90219381	+	610.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_194334, exon 9 of 13)	exon (NM_194334, exon 9 of 13)	51888.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124623367-2	chr2	124622867	124623867	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	13071.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3615968-1	chr4	3615468	3616468	+	610.0	f1_c57bl6.idr	3' UTR (NM_054089, exon 13 of 13)	3' UTR (NM_054089, exon 13 of 13)	-40538.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	5.5	1.5	0.5	0.5	0.0	0.5
Merged-chr2-5653741-2	chr2	5653241	5654241	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	22305.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	1.5	3.0	0.0	1.5	3.0	0.5
Merged-chr1-93826376-2	chr1	93825876	93826876	+	610.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178882, exon 2 of 10)	exon (NM_178882, exon 2 of 10)	1136.0	NM_001310767	98314.0	Mm.383401	NM_178882	ENSMUSG00000073609	D2hgdh	AA408776|AA408778|AI325464	D-2-hydroxyglutarate dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36524532-1	chr18	36524032	36525032	+	610.0	f1_balb.idr	Intergenic	B1_Mur3|SINE|Alu	-3620.0	NM_172830	240215.0	Mm.135463	NM_172830	ENSMUSG00000024485	Slc4a9	AE4|D630003B07|D630024F24Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 9	protein-coding	2.0	1.5	2.5	0.0	1.5	2.5
Merged-chr11-82969924-2	chr11	82969424	82970424	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9243.0	NR_045932	76392.0	Mm.295205	NR_045932	ENSMUSG00000086327	Slfn5os	1700003F17Rik	schlafen 5, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143978308-1	chr5	143977808	143978808	+	610.0	f1_balb.idr	Intergenic	Intergenic	36545.0	NM_177682	231874.0	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	0.0	2.5	0.0	0.0	2.5	0.0
Merged-chr4-43735680-3	chr4	43735179	43736179	+	609.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	5645.0	NM_001348108	71406.0	Mm.33063	NM_027789	ENSMUSG00000028475	Spaar	5430416O09Rik|AI481365|Spar	small regulatory polypeptide of amino acid response	protein-coding	0.0	0.0	0.0	1.0	3.5	5.0
Merged-chr10-127340719-2	chr10	127340219	127341219	+	609.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010296, intron 2 of 12)	intron (NM_010296, intron 2 of 12)	860.0	NM_010296	14632.0	Mm.391450	NM_010296	ENSMUSG00000025407	Gli1	AV235269|Zfp-5|Zfp5	GLI-Kruppel family member GLI1	protein-coding	3.0	0.0	6.5	0.0	0.0	0.0
Merged-chr4-150176714-3	chr4	150176204	150177204	+	609.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	24431.0	NM_009802	12353.0	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	2.5	6.5	2.5	0.0	4.0	0.5
Merged-chr9-94689375-2	chr9	94688875	94689875	+	609.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 2 of 15)	Lx2|LINE|L1	19483.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	5.0	14.0	4.5	6.0	21.0	7.5
Merged-chr11-116411940-2	chr11	116411440	116412440	+	609.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_027258, intron 1 of 18)	intron (NM_027258, intron 1 of 18)	1092.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133663018-2	chr4	133662562	133663562	+	609.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145956, intron 2 of 2)	intron (NM_001145956, intron 2 of 2)	9585.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	7.0	28.5	7.5	53.5	129.0	110.0
Merged-chr8-77422303-2	chr8	77421803	77422803	+	609.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 5 of 22)	MLT1A1|LTR|ERVL-MaLR	-94753.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53179003-4	chr18	53178576	53179576	+	609.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357463, intron 1 of 15)	B1_Mur4|SINE|Alu	2784.0	NM_026386	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-94240056-2	chr9	94239556	94240556	+	609.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	298025.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	5.0	6.5	0.0	5.0	0.0	0.0
Merged-chr12-103435481-2	chr12	103434981	103435981	+	609.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_026790, exon 2 of 7)	exon (NM_026790, exon 2 of 7)	1292.0	NM_194069	52668.0	Mm.2121	NM_026790	ENSMUSG00000064215	Ifi27	1110013J02Rik|2900026P10Rik|D12Ertd647e|ISG12a|Ifi27l1	interferon, alpha-inducible protein 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84449621-3	chr1	84449099	84450099	+	609.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152915, intron 7 of 12)	intron (NM_152915, intron 7 of 12)	-164954.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107684557-2	chr9	107684004	107685004	+	609.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011349, intron 14 of 17)	intron (NM_011349, intron 14 of 17)	-4912.0	NM_008140	14685.0	Mm.284853	NM_008140	ENSMUSG00000034837	Gnat1	Gnat-1|Ird1|Ird2|Tralpha|irdc|irdr|transducin	guanine nucleotide binding protein, alpha transducing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75857691-2	chr10	75857191	75858191	+	609.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2559.0	NM_010798	17319.0	Mm.2326	NM_010798	ENSMUSG00000033307	Mif	GIF|Glif	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72392123-2	chr6	72391623	72392623	+	609.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1456.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55965467-2	chr16	55964967	55965967	+	609.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024218)	promoter-TSS (NM_024218)	-808.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49164435-3	chr16	49163959	49164959	+	609.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166210, intron 32 of 40)	intron (NM_001166210, intron 32 of 40)	106973.0	NM_001166210	667772.0	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-6890840-2	chr13	6890340	6891340	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-242069.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99484479-2	chr15	99484010	99485010	+	609.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9780.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	3.0	0.0	0.0	8.0	0.0	0.0
Merged-chr19-10470546-2	chr19	10470046	10471046	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12351.0	NM_133689	67752.0	Mm.25939	NM_133689	ENSMUSG00000035179	Ppp1r32	4930579J09Rik|AU015816|IIIG9|IIIG9L|IIIG9S	protein phosphatase 1, regulatory subunit 32	protein-coding	2.0	0.0	0.0	2.0	0.0	0.0
Merged-chr12-13871603-2	chr12	13871103	13872103	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-243957.0	NR_136761	102639399.0	Mm.122052	NR_136761	ENSMUSG00000113666	Gm35725	-	predicted gene, 35725	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-19916617-2	chr14	19916117	19917117	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285910, intron 1 of 2)	MLTR18D_MM|LTR|ERVK	60076.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100524751-2	chr12	100524251	100525251	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3929.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70514025-2	chr8	70513525	70514525	+	609.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029366, exon 5 of 5)	exon (NM_029366, exon 5 of 5)	3539.0	NR_151735	78183.0	Mm.297372	NR_151735		4930522P08Rik	-	RIKEN cDNA 4930522P08 gene	ncRNA	0.0	2.0	0.0	1.5	4.0	3.0
Merged-chr15-62111434-2	chr15	62110934	62111934	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 2 of 6)	(CA)n|Simple_repeat|Simple_repeat	72177.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83070568-2	chr6	83070068	83071068	+	609.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009392)	promoter-TSS (NM_009392)	-343.0	NM_009392	21909.0	Mm.37	NM_009392	ENSMUSG00000068327	Tlx2	Enx|Hox11L.1|Hox11l1|NCX|Ncx1|Tlx1l1|Tlx1l2	T cell leukemia, homeobox 2	protein-coding	0.0	0.0	0.0	0.0	5.0	0.0
Merged-chr16-4476187-2	chr16	4475687	4476687	+	609.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347162)	TTS (NM_001347162)	46888.0	NM_001347162	106393.0	Mm.35811	NM_175347	ENSMUSG00000022519	Srl	9830004M20Rik|AW108387|sar	sarcalumenin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-92877699-2	chr7	92877199	92878199	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028243, intron 1 of 8)	ORR1B1|LTR|ERVL-MaLR	2446.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25852469-2	chr17	25851969	25852969	+	609.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163766, exon 21 of 41)	exon (NM_001163766, exon 21 of 41)	-7618.0	NM_145999	214952.0	Mm.40907	NM_145999	ENSMUSG00000025733	Rhot2	Arht2|Miro2	ras homolog family member T2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88010658-2	chr8	88010158	88011158	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-51063.0	NM_033327	94187.0	Mm.23452	NM_033327	ENSMUSG00000045333	Zfp423	Ebfaz|Roaz|Zfp104|Znf423|ataxia1|mKIAA0760|nur12	zinc finger protein 423	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70790720-2	chr11	70790220	70791220	+	609.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001045526)	TTS (NM_001045526)	21841.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	10.5	8.5	13.5	24.0	18.0	16.0
Merged-chr11-79086609-2	chr11	79086109	79087109	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	-26773.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-147178969-1	chr2	147178469	147179469	+	609.5	f0_balb.idr	intron (NM_001077632, intron 2 of 2)	intron (NM_001077632, intron 2 of 2)	-5114.0	NR_030769	100313531.0	Mm.405189	NR_030769	ENSMUSG00000086509	Nkx2-2os	Gm14112|Nkx2-2as|Nkx2.2AS	NK2 homeobox 2, opposite strand	ncRNA	2.5	0.0	0.5	2.5	2.0	3.5
Merged-chr16-48994726-2	chr16	48994226	48995226	+	609.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356425)	promoter-TSS (NM_001356425)	538.0	NM_172616	224171.0	Mm.24491	NM_172616	ENSMUSG00000033031	C330027C09Rik	AA408511|AU018569|Cip2a|Kiaa1524	RIKEN cDNA C330027C09 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100785941-2	chr13	100785441	100786441	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172301, intron 1 of 8)	intron (NM_172301, intron 1 of 8)	545.0	NM_172301	268697.0	Mm.260114	NM_172301	ENSMUSG00000041431	Ccnb1	Ccnb1-rs1|Ccnb1-rs13|CycB1|Cycb-4|Cycb-5|Cycb1-rs1	cyclin B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-8101252-2	chr14	8100752	8101752	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	MT2C_Mm|LTR|ERVL	3041.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134104738-2	chr1	134104238	134105238	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6504.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139429598-2	chr4	139429098	139430098	+	609.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001160319, exon 47 of 106)	exon (NM_001160319, exon 47 of 106)	48939.0	NM_001160319	69116.0	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	0.0	1.0	0.5	0.0	1.0	0.5
Merged-chr8-25599918-2	chr8	25599418	25600418	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1683.0	NM_001308481	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77609790-2	chr10	77609290	77610290	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301671, intron 1 of 3)	intron (NM_001301671, intron 1 of 3)	3192.0	NM_001301671	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87717104-2	chr16	87716604	87717604	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 2 of 4)	intron (NM_007520, intron 2 of 4)	18150.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31101106-2	chr6	31100606	31101606	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-38013.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-40802881-2	chr1	40802381	40803381	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2720.0	NM_001081198	381339.0	Mm.334678	NM_001081198	ENSMUSG00000079588	Tmem182	2310079P10Rik|AI414494	transmembrane protein 182	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-5802967-2	chr8	5802467	5803467	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-697680.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-87058589-2	chr15	87058089	87059089	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-485710.0	NM_001252310	106014.0	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	0.0	2.0	0.0	0.0	1.0	2.0
Merged-chr14-117298273-2	chr14	117297773	117298773	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011821, intron 2 of 8)	intron (NM_011821, intron 2 of 8)	372976.0	NM_011821	23888.0	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32078423-2	chr16	32077923	32078923	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177326, intron 1 of 14)	intron (NM_177326, intron 1 of 14)	919.0	NM_177326	224105.0	Mm.234204	NM_177326	ENSMUSG00000022781	Pak2	5330420P17Rik|A130002K10Rik|AI836325|D16Ertd269e|PAK-2|mKIAA4182	p21 (RAC1) activated kinase 2	protein-coding	23.5	29.0	22.0	25.0	31.0	22.0
Merged-chr15-59805969-2	chr15	59805469	59806469	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11010.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.0	0.0	1.0	5.5	2.5	0.0
Merged-chr10-84019554-2	chr10	84019054	84020054	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81143.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25589759-2	chr9	25589259	25590259	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 6 of 7)	intron (NM_026189, intron 6 of 7)	108162.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63267406-2	chr4	63266906	63267906	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025685, intron 14 of 60)	L2b|LINE|L2	10555.0	NR_030477	735262.0		NR_030477	ENSMUSG00000070102	Mir455	Mirn455|mir-455|mmu-mir-455	microRNA 455	ncRNA	3.0	1.0	1.0	0.0	0.0	2.5
Merged-chr5-114776917-2	chr5	114776410	114777410	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026718, intron 1 of 14)	intron (NM_026718, intron 1 of 14)	1770.0	NM_026718	68420.0	Mm.275554	NM_026718	ENSMUSG00000041870	Ankrd13a	1100001D10Rik|ANKRD13|AU046136	ankyrin repeat domain 13a	protein-coding	2.5	0.5	2.0	0.0	7.5	4.0
Merged-chr12-83856376-2	chr12	83855876	83856876	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_073564, intron 2 of 12)	intron (NR_073564, intron 2 of 12)	-14018.0	NM_010949	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73178275-2	chr14	73177775	73178775	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134083, intron 13 of 14)	intron (NM_134083, intron 13 of 14)	28576.0	NR_030459	751541.0		NR_030459	ENSMUSG00000076121	Mir687	Mirn687|mir-687|mmu-mir-687	microRNA 687	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53108006-2	chr4	53107506	53108506	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 6 of 49)	intron (NM_013454, intron 6 of 49)	51889.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63404717-2	chr4	63404217	63405217	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1272.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-80262158-2	chr13	80261658	80262658	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	-621226.0	NR_153410	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-85398900-2	chr9	85398400	85399400	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71750.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0.5	0.0	1.0	0.5	0.0	0.0
Merged-chr3-139065107-2	chr3	139064607	139065607	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 1 of 13)	intron (NM_001356388, intron 1 of 13)	10094.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	4.0	4.5	3.0	0.5	4.5	7.0
Merged-chr9-110412164-2	chr9	110411664	110412664	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-3954.0	NM_001081043	104831.0	Mm.335477	NM_001081043	ENSMUSG00000036057	Ptpn23	AI462446|PTP-TD14	protein tyrosine phosphatase, non-receptor type 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36877246-2	chr16	36876746	36877746	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-2420.0	NM_134111	106389.0	Mm.432078	NM_134111	ENSMUSG00000022838	Eaf2	AW048865|FESTA-L|FESTA-S|Festa|Traits|U19	ELL associated factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-8847519-2	chr16	8847019	8848019	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081400, intron 3 of 3)	tRNA-Ala-GCY_|tRNA|tRNA	17419.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-129766631-1	chr7	129766131	129767131	+	609.5	f0_balb.idr	Intergenic	Intergenic	174768.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77833910-2	chr15	77833410	77834410	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 1 of 40)	MTD|LTR|ERVL-MaLR	8265.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.0	0.0	0.5	1.5	0.0	2.0
Merged-chr13-34155220-2	chr13	34154720	34155720	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-7744.0	NM_001101430	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	6.0	1.0	4.5	4.0	5.5	1.0
Merged-chr5-36561666-2	chr5	36561166	36562166	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 2 of 13)	MER3|DNA|hAT-Charlie	20731.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	39.0	90.0	34.5	21.5	63.0	68.0
Merged-chr2-35492242-2	chr2	35491742	35492742	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30793.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191851658-2	chr1	191851158	191852158	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30185.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	1.5	8.5	5.0	5.5	2.5	1.0
Merged-chr4-107119409-2	chr4	107118909	107119909	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22518.0	NM_172873	242603.0	Mm.257231	NM_172873	ENSMUSG00000047636	Cdcp2	D030010E02Rik	CUB domain containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34252873-2	chr13	34252373	34253373	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	ORR1F|LTR|ERVL-MaLR	89909.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166572589-2	chr2	166572089	166573089	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 35 of 39)	intron (NM_177782, intron 35 of 39)	8067.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135789969-1	chr1	135789469	135790469	+	609.5	f0_balb.idr	Intergenic	Intergenic	-9452.0	NM_021467	21952.0	Mm.44379	NM_021467	ENSMUSG00000026418	Tnni1	2700018B22Rik|AI747285|ssTnI	troponin I, skeletal, slow 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7276655-2	chr19	7276155	7277155	+	609.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007928, exon 18 of 18)	3' UTR (NM_007928, exon 18 of 18)	8376.0	NM_001320554	104383.0	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-96683399-2	chr8	96682899	96683899	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-795034.0	NM_010325	14719.0	Mm.230169	NM_010325	ENSMUSG00000031672	Got2	AL022787|FABP-pm|Got-2|Kyat4|mAspAT	glutamatic-oxaloacetic transaminase 2, mitochondrial	protein-coding	2.0	2.5	2.0	7.0	0.0	3.5
Merged-chr11-83270628-2	chr11	83270128	83271128	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16098.0	NM_001166028	237890.0	Mm.297670	NM_001166028	ENSMUSG00000082101	Slfn14	Gm20|Slfn14-ps	schlafen 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54595167-2	chr13	54594667	54595667	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028870, intron 4 of 4)	intron (NM_028870, intron 4 of 4)	4936.0	NM_025933	67044.0	Mm.29353	NM_025933	ENSMUSG00000025868	Higd2a	2010110M21Rik|AA690237	HIG1 domain family, member 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143009499-2	chr7	143008999	143009999	+	609.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_020286, intron 2 of 7)	intron (NM_020286, intron 2 of 7)	3840.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115481839-2	chr6	115481339	115482339	+	609.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 7 of 7)	intron (NM_001308354, intron 7 of 7)	59773.0	NM_011146	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74938913-2	chr15	74938396	74939396	+	609.333374	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16155.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	51.0	171.0	135.5	84.5	261.5	160.0
Merged-chr1-118477100-3	chr1	118476615	118477615	+	609.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359330, intron 8 of 39)	B3|SINE|B2	-17850.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-15999692-3	chr3	15999181	16000181	+	609.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081687, intron 1 of 3)	RLTR45|LTR|ERVK	6651.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	0.0	0.0	2.0	0.0	0.0	2.5
Merged-chr5-105522358-3	chr5	105521853	105522853	+	609.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 1 of 3)	MIRb|SINE|MIR	2882.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	1.0	10.5	0.0	0.5	7.5	4.0
Merged-chr8-14072735-3	chr8	14072210	14073210	+	609.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034862, intron 2 of 5)	intron (NM_001034862, intron 2 of 5)	17617.0	NM_001034862	234086.0	Mm.268896	NM_001034862	ENSMUSG00000051978	Erich1	-	glutamate rich 1	protein-coding	0.0	0.0	0.0	0.0	0.0	2.5
Merged-chr2-154891805-2	chr2	154891305	154892305	+	609.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_026030, intron 1 of 8)	intron (NM_026030, intron 1 of 8)	1101.0	NM_026030	67204.0	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	55.5	124.5	126.5	50.0	131.0	129.0
Merged-chr13-74261659-2	chr13	74261159	74262159	+	609.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317351, intron 2 of 9)	intron (NM_001317351, intron 2 of 9)	30672.0	NM_009644	11624.0	Mm.290446	NM_009644	ENSMUSG00000021575	Ahrr	mKIAA1234	aryl-hydrocarbon receptor repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-33243293-3	chr4	33242848	33243848	+	609.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5439.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-7314444-3	chr4	7314051	7315051	+	609.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-246137.0	NR_040645	71510.0	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129812984-2	chr4	129812506	129813506	+	609.299988	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-7473.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	4.0	27.5	24.0	6.0	16.5	22.5
Merged-chr2-165851265-2	chr2	165850771	165851771	+	609.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_027230, intron 4 of 23)	intron (NM_027230, intron 4 of 23)	6902.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	7.0	6.0	2.0	3.5	2.0	4.5
Merged-chr4-101186468-2	chr4	101185968	101186968	+	609.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 4 of 24)	intron (NM_146145, intron 4 of 24)	78814.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-162705391-2	chr1	162704891	162705891	+	609.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081290, exon 16 of 35)	exon (NM_001081290, exon 16 of 35)	35165.0	NM_001081290	226562.0	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	2.5	1.0	3.0	0.0	1.0	8.0
Merged-chr13-37820659-2	chr13	37820159	37821159	+	609.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5379.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65733164-2	chr17	65732664	65733664	+	609.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	39588.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-36030240-3	chr12	36029720	36030720	+	609.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025359, intron 1 of 5)	RSINE1|SINE|B4	12258.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	88.5	133.5	132.5	62.0	135.0	142.5
Merged-chr8-128454936-3	chr8	128454411	128455411	+	609.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358959, intron 6 of 16)	intron (NM_001358959, intron 6 of 16)	95670.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	6.0	16.0	15.0	6.0	16.0	15.5
Merged-chr3-47201635-2	chr3	47201135	47202135	+	609.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-300853.0	NR_105800	102465199.0		NR_105800	ENSMUSG00000098417	Mir6379	Gm27730|mmu-mir-6379	microRNA 6379	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-89009062-3	chr11	89008445	89009445	+	609.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_009546, intron 2 of 8)	intron (NM_009546, intron 2 of 8)	9542.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	6.0	16.5	21.0	3.5	26.5	3.5
Merged-chr18-9378290-2	chr18	9377807	9378807	+	609.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026484, intron 2 of 9)	intron (NM_026484, intron 2 of 9)	71847.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	11.0	44.5	26.0	11.0	48.5	11.5
Merged-chr10-21688524-2	chr10	21688024	21689024	+	609.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2321.0	NR_045843	432436.0	Mm.244553	NM_001004162	ENSMUSG00000056716	Gm5420	EG432436	predicted gene 5420	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-135915803-1	chr6	135915303	135916303	+	609.0	f1_c57bl6.idr	intron (NM_008171, intron 5 of 14)	intron (NM_008171, intron 5 of 14)	256890.0	NR_126088	75024.0	Mm.399147	NR_126088	ENSMUSG00000107396	4930425L21Rik	4930473P14Rik	RIKEN cDNA 4930425L21 gene	ncRNA	0.0	1.5	2.0	3.0	0.0	9.0
Merged-chr3-59312141-1	chr3	59311641	59312641	+	609.0	f0_balb.idr	intron (NM_177855, intron 42 of 43)	intron (NM_177855, intron 42 of 43)	32115.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	9.5	9.0	26.0	13.0	29.0	36.0
Merged-chr7-14513765-1	chr7	14513265	14514265	+	609.0	f0_balb.idr	Intergenic	L1_Mur3|LINE|L1	-20839.0	NM_001184981	638251.0	Mm.482063	NM_001184981	ENSMUSG00000094156	Sult2a7	EG638251|Gm7231	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 7	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr6-145088607-1	chr6	145088107	145089107	+	609.0	f1_c57bl6.idr	Intergenic	Intergenic	-12450.0	NM_007532	12035.0	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	9.5	1.0	0.0	0.0	7.0	2.0
Merged-chr1-155092549-2	chr1	155092049	155093049	+	609.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7087.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50801210-2	chr9	50800710	50801710	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045601, intron 8 of 13)	intron (NR_045601, intron 8 of 13)	25985.0	NR_045601	102580.0	Mm.160035	NM_133981	ENSMUSG00000032059	Alg9	8230402H15Rik|AI747665|B430313H07Rik|Dibd1	asparagine-linked glycosylation 9 (alpha 1,2 mannosyltransferase)	protein-coding	13.5	0.5	0.5	9.0	0.0	2.0
Merged-chr1-172589455-1	chr1	172588955	172589955	+	609.0	f1_c57bl6.idr	intron (NM_029084, intron 1 of 4)	intron (NM_029084, intron 1 of 4)	1113.0	NM_029084	74748.0	Mm.179812	NM_029084	ENSMUSG00000053318	Slamf8	5830408F06Rik|Blame|SBBI42	SLAM family member 8	protein-coding	25.5	54.5	54.5	10.5	26.5	16.5
Merged-chr5-20877878-2	chr5	20877378	20878378	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172992, intron 1 of 17)	intron (NM_172992, intron 1 of 17)	4246.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-145137266-2	chr5	145136766	145137766	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033313, intron 1 of 5)	intron (NM_001033313, intron 1 of 5)	2823.0	NM_001033313	231887.0	Mm.188851	NM_001033313	ENSMUSG00000029623	Pdap1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56453080-2	chr18	56452580	56453580	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	20948.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-54014412-1	chr17	54013912	54014912	+	609.0	f1_c57bl6.idr	Intergenic	Intergenic	-23781.0	NM_018751	20888.0	Mm.10108	NM_018751	ENSMUSG00000023943	Sult1c1	(PST)G|P-SULT|ST1C1|Stp2|Sult1a2|mOLFST	sulfotransferase family, cytosolic, 1C, member 1	protein-coding	0.5	0.0	2.0	0.0	0.0	2.0
Merged-chr5-143047907-2	chr5	143047407	143048407	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	65113.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-69484728-2	chr4	69484228	69485228	+	609.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	-530331.0	NM_019967	56710.0	Mm.248788	NM_019967	ENSMUSG00000028351	Brinp1	BRINP|Dbc1|Dbccr1|Fam5a	bone morphogenic protein/retinoic acid inducible neural specific 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95548588-1	chr13	95548088	95549088	+	609.0	f1_c57bl6.idr	Intergenic	Intergenic	-23348.0	NM_007974	14063.0	Mm.1614	NM_007974	ENSMUSG00000021678	F2rl1	Gpcr11|PAR-2|Par2	coagulation factor II (thrombin) receptor-like 1	protein-coding	0.0	15.0	11.0	0.0	1.0	1.5
Merged-chr5-140759934-2	chr5	140759434	140760434	+	609.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010302)	TTS (NM_010302)	35807.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133456488-2	chr4	133456014	133457014	+	609.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23619.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	0.5	2.5	4.0	0.0	0.0	0.5
Merged-chr7-142439637-1	chr7	142439137	142440137	+	609.0	f1_balb.idr	intron (NR_153437, intron 4 of 5)	intron (NR_153437, intron 4 of 5)	2803.0	NM_001285861	55925.0	Mm.213002	NM_018802	ENSMUSG00000031098	Syt8	-	synaptotagmin VIII	protein-coding	0.5	0.0	1.5	0.0	0.0	0.0
Merged-chr15-66101676-1	chr15	66101176	66102176	+	609.0	f0_balb.idr	intron (NM_152923, intron 1 of 14)	intron (NM_152923, intron 1 of 14)	-124872.0	NM_001145096	654498.0	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84229596-2	chr3	84229096	84230096	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271726, intron 1 of 11)	Tigger7|DNA|TcMar-Tigger	-8719.0	NM_030706	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr15-99025889-2	chr15	99025389	99026389	+	609.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4002.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110884032-1	chr9	110883532	110884532	+	609.0	f1_c57bl6.idr	non-coding (NR_153354, exon 3 of 26)	non-coding (NR_153354, exon 3 of 26)	3710.0	NM_001146060	235633.0	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	3.5	3.5	6.0	6.0	7.0	8.5
Merged-chr10-62536132-2	chr10	62535632	62536632	+	609.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8687.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76114350-2	chr14	76113850	76114850	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013745, intron 3 of 9)	intron (NM_013745, intron 3 of 9)	3459.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78035652-1	chr9	78035152	78036152	+	609.0	f1_balb.idr	Intergenic	Intergenic	-16306.0	NM_008103	14531.0	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1	protein-coding	1.0	0.5	0.0	0.0	0.0	0.0
Merged-chr11-106817633-2	chr11	106817133	106818133	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166685, intron 16 of 18)	intron (NM_001166685, intron 16 of 18)	28381.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74732174-2	chr15	74731674	74732674	+	609.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026671)	TTS (NM_026671)	2139.0	NM_026671	68311.0	Mm.306880	NM_026671	ENSMUSG00000022595	Lypd2	0610005K03Rik|Lypdc2|VLL	Ly6/Plaur domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-103818539-2	chr5	103818039	103819039	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133919, intron 6 of 19)	intron (NM_133919, intron 6 of 19)	63966.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8942416-2	chr3	8941916	8942916	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025263, intron 4 of 6)	RMER1B|Other|Other	-18559.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60747538-2	chr13	60747042	60748042	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 19 of 26)	intron (NM_134062, intron 19 of 26)	38822.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	3.0	10.5	5.0	11.5	0.0	4.0
Merged-chr8-101087075-2	chr8	101086575	101087575	+	609.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	1670401.0	NR_132435	234624.0	Mm.124595	NM_175479	ENSMUSG00000052479	A330008L17Rik	-	RIKEN cDNA A330008L17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-132071073-1	chr3	132070573	132071573	+	609.0	f0_balb.idr	Intergenic	B3|SINE|B2	-14219.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	11.5	7.5	2.0	8.0	5.5	5.0
Merged-chr1-135154114-2	chr1	135153614	135154614	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026823, intron 3 of 6)	intron (NM_026823, intron 3 of 6)	7280.0	NM_026823	68724.0	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6386857-1	chr4	6386357	6387357	+	609.0	f0_balb.idr	intron (NM_001098227, intron 6 of 8)	intron (NM_001098227, intron 6 of 8)	21177.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-58162080-2	chr2	58161580	58162580	+	609.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1894.0	NR_045896	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56279065-2	chr17	56278565	56279565	+	609.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025836, exon 8 of 8)	3' UTR (NM_025836, exon 8 of 8)	-2298.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34816343-2	chr1	34815843	34816843	+	609.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001160235, exon 8 of 8)	3' UTR (NM_001160235, exon 8 of 8)	14621.0	NM_183019	226970.0	Mm.41604	NM_183019	ENSMUSG00000037509	Arhgef4	9330140K16Rik|Asef	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-42934980-1	chr16	42934480	42935480	+	609.0	f0_balb.idr	intron (NM_001285805, intron 1 of 10)	L1MB1|LINE|L1	-20600.0	NR_002445	170658.0	Mm.375824	NR_002445		BC002163	-	NADH dehydrogenase Fe-S protein 5 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-26812273-1	chr13	26811773	26812773	+	609.0	f0_c57.idr	Intergenic	Intergenic	-42108.0	NM_008232	15192.0	Mm.7411	NM_008232	ENSMUSG00000045835	Hdgfl1	4921520N01Rik|HRP-1|Hdgfrp1|Pwwp1	hepatoma derived growth factor-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64096588-2	chr15	64096088	64097088	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 26 of 28)	intron (NM_001276461, intron 26 of 28)	-36140.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	10.0	21.0	10.5	7.0	31.5	20.5
Merged-chr2-147307864-1	chr2	147307364	147308364	+	609.0	f0_balb.idr	non-coding (NR_030769, exon 5 of 6)	non-coding (NR_030769, exon 5 of 6)	54929.0	NR_040330	99041.0	Mm.373081	NR_040330		AI646519	Aspax1|Peat	expressed sequence AI646519	ncRNA	0.5	3.5	1.5	0.0	1.0	2.0
Merged-chr2-155380474-1	chr2	155379974	155380974	+	609.0	f1_balb.idr	Intergenic	Intergenic	-1382.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	2.0	4.0	9.0	3.0	7.5	4.5
Merged-chr6-134517593-1	chr6	134517093	134518093	+	609.0	f0_balb.idr	intron (NM_008514, intron 3 of 22)	L1M4|LINE|L1	49320.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	19.0	7.0	19.0	14.5	4.5	8.0
Merged-chr10-13990947-2	chr10	13990447	13991447	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	MLT1C|LTR|ERVL-MaLR	24568.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18697389-2	chr16	18696889	18697889	+	609.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-67451.0	NM_213614	18951.0	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75135388-2	chr7	75134888	75135888	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360573, intron 10 of 13)	intron (NM_001360573, intron 10 of 13)	84631.0	NM_001360575	64176.0	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6279281-1	chr2	6278781	6279781	+	609.0	f0_balb.idr	intron (NR_040333, intron 3 of 6)	intron (NR_040333, intron 3 of 6)	-43476.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.0	3.5	13.0	1.5	19.5	10.0
Merged-chr3-153725099-1	chr3	153724599	153725599	+	609.0	f0_balb.idr	promoter-TSS (NM_011372)	promoter-TSS (NM_011372)	34.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87265106-4	chr17	87264634	87265634	+	609.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176808, intron 1 of 4)	intron (NM_176808, intron 1 of 4)	813.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	73.5	190.0	120.5	114.0	169.0	147.5
Merged-chr9-32480442-2	chr9	32479961	32480961	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	60991.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-52105460-2	chr14	52104960	52105960	+	609.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1439.0	NM_001360180	15381.0	Mm.427321	NM_016884	ENSMUSG00000060373	Hnrnpc	AL022939|D14Wsu171e|Hnrpc|Hnrpc1|Hnrpc2|hnRNPC1|hnRNPC2|hnrnp-C	heterogeneous nuclear ribonucleoprotein C	protein-coding	21.5	86.0	46.5	25.5	118.5	56.0
Merged-chr1-123905108-1	chr1	123904608	123905608	+	609.0	f1_balb.idr	exon (NM_199021, exon 2 of 26)	exon (NM_199021, exon 2 of 26)	140451.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	20.0	17.5	23.0	8.5	13.5	16.5
Merged-chr13-46961968-1	chr13	46961468	46962468	+	609.0	f0_c57.idr	Intergenic	HAL1|LINE|L1	-32250.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	0.0	0.0	1.5	0.0	0.0	3.5
Merged-chr2-4989182-2	chr2	4988682	4989682	+	609.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	13060.0	NM_026754	68527.0	Mm.27791	NM_026754	ENSMUSG00000026668	Ucma	1110017I16Rik|AW121955|Grp	upper zone of growth plate and cartilage matrix associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78309992-2	chr15	78309492	78310492	+	609.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4271.0	NM_001287389	12984.0	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57196760-2	chr17	57196260	57197260	+	609.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	-2579.0	NM_019418	50930.0	Mm.483369	NM_019418	ENSMUSG00000005824	Tnfsf14	HVEM-L|HVEML|LIGHT|LTg|Ly113|Tnlg1d	tumor necrosis factor (ligand) superfamily, member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32234226-2	chr2	32233726	32234726	+	609.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001159634, exon 32 of 32)	3' UTR (NM_001159634, exon 32 of 32)	-2457.0	NM_145145	99011.0	Mm.31192	NM_145145	ENSMUSG00000039254	Pomt1	AI505244	protein-O-mannosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111909144-2	chr12	111908644	111909644	+	609.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1089.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34643549-1	chr17	34643049	34644049	+	609.0	f1_c57bl6.idr	Intergenic	Intergenic	-1334.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	2.5	24.0	11.5	2.5	24.0	11.5
Merged-chr6-125574008-2	chr6	125573508	125574508	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 6 of 51)	intron (NM_011708, intron 6 of 51)	21060.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41355727-2	chr13	41355227	41356227	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 2 of 7)	intron (NM_001111324, intron 2 of 7)	3274.0	NM_017464	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-148770557-1	chr3	148770057	148771057	+	609.0	f0_balb.idr	Intergenic	Intergenic	184078.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.0	4.5	0.0	0.5	0.0	0.0
Merged-chr16-33593110-2	chr16	33592610	33593610	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 5 of 11)	T-rich|Low_complexity|Low_complexity	74515.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157564979-2	chr2	157564479	157565479	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016916, intron 1 of 1)	intron (NM_016916, intron 1 of 1)	1382.0	NM_001355426	53619.0	Mm.480461	NM_016916	ENSMUSG00000067787	Blcap	AI462828|Bc10	bladder cancer associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118727469-1	chr2	118726969	118727969	+	609.0	f1_balb.idr	intron (NM_177568, intron 1 of 31)	intron (NM_177568, intron 1 of 31)	969.0	NM_177568	18796.0	Mm.215156	NM_177568	ENSMUSG00000040061	Plcb2	AI550384|B230205M18Rik|B230399N12	phospholipase C, beta 2	protein-coding	25.0	41.5	12.0	26.0	34.0	25.0
Merged-chr4-59374646-1	chr4	59374146	59375146	+	609.0	f1_c57bl6.idr	intron (NM_001163288, intron 8 of 16)	intron (NM_001163288, intron 8 of 16)	63987.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	5.5	5.0	0.0	0.5	0.0	7.0
Merged-chr9-99416950-1	chr9	99416450	99417450	+	609.0	f0_balb.idr	intron (NM_008624, intron 1 of 5)	intron (NM_008624, intron 1 of 5)	19762.0	NM_008624	17532.0	Mm.2045	NM_008624	ENSMUSG00000032470	Mras	2900078C09Rik|AI326250	muscle and microspikes RAS	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-121202750-2	chr6	121202250	121203250	+	609.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7984.0	NM_017379	53857.0	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	0.0	6.0	0.0	0.0	0.0	0.0
Merged-chr7-4513854-2	chr7	4513354	4514354	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360154, intron 3 of 12)	intron (NM_001360154, intron 3 of 12)	2121.0	NM_001277903	21955.0	Mm.358643	NM_011618	ENSMUSG00000064179	Tnnt1	AW146156|Tnt|sTnT|ssTnT	troponin T1, skeletal, slow	protein-coding	0.0	2.5	0.0	0.0	2.5	0.0
Merged-chr11-97432863-2	chr11	97432363	97433363	+	609.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17297.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	3.5	3.5	1.5	0.0	3.0	0.5
Merged-chr8-82983343-1	chr8	82982843	82983843	+	609.0	f0_balb.idr	intron (NM_177378, intron 1 of 6)	intron (NM_177378, intron 1 of 6)	119987.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	1.5	12.5	14.0	5.0	3.5	4.0
Merged-chr8-52450878-3	chr8	52450384	52451384	+	609.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	94273.0	NR_151738	330767.0	Mm.246790	NR_151738	ENSMUSG00000110013	1190028D05Rik	-	RIKEN cDNA 1190028D05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129617033-2	chr4	129616533	129617533	+	609.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_198026, exon 5 of 5)	exon (NM_198026, exon 5 of 5)	2060.0	NM_198026	230767.0	Mm.441132	NM_198026	ENSMUSG00000040795	Iqcc	BC026978	IQ motif containing C	protein-coding	0.0	12.0	1.0	4.5	0.0	1.0
Merged-chr5-92145165-3	chr5	92144675	92145675	+	609.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019490, intron 1 of 23)	intron (NM_019490, intron 1 of 23)	7237.0	NM_019490	56041.0	Mm.15868	NM_019490	ENSMUSG00000029407	Uso1	115kDa|TAP|Vdp	USO1 vesicle docking factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-76620416-1	chr2	76619916	76620916	+	609.0	f0_balb.idr	Intergenic	Intergenic	27578.0	NM_011871	23992.0	Mm.277250	NM_011871	ENSMUSG00000002731	Prkra	AV120107|PRK|Pact|RAX|lear	protein kinase, interferon inducible double stranded RNA dependent activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11905508-2	chr11	11905008	11906008	+	609.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-7364.0	NM_001190448	13195.0	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-58076311-1	chr14	58075811	58076811	+	609.0	f0_balb.idr	intron (NM_013518, intron 1 of 2)	CpG	3625.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-110477872-2	chr13	110477372	110478372	+	609.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82828.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	2.5	0.0	1.5	0.0	0.0	0.0
Merged-chr9-83440287-2	chr9	83439787	83440787	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_102437, intron 1 of 2)	intron (NR_102437, intron 1 of 2)	812.0	NM_027448	75782.0	Mm.199698	NM_027448	ENSMUSG00000032258	Lca5	4930431B11Rik|5730406O13Rik|AV274874|ORF64	Leber congenital amaurosis 5 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40994867-3	chr19	40994358	40995358	+	609.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008528)	promoter-TSS (NM_008528)	-323.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	0.5	1.0	0.0	1.0	0.5	2.5
Merged-chr8-122887098-1	chr8	122886598	122887598	+	609.0	f1_c57bl6.idr	intron (NM_001081379, intron 11 of 12)	intron (NM_001081379, intron 11 of 12)	38724.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87603447-2	chr17	87602948	87603948	+	609.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32531.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	9.0	7.0	12.0	7.0	0.0	2.5
Merged-chr16-4622640-1	chr16	4622140	4623140	+	609.0	f1_balb.idr	intron (NM_025571, intron 1 of 4)	B2_Mm2|SINE|B2	2306.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-46912663-1	chr15	46912163	46913163	+	609.0	f1_c57bl6.idr	Intergenic	Lx|LINE|L1	289358.0	NR_045811	75281.0	Mm.159487	NR_045811	ENSMUSG00000051198	4930548G14Rik	-	RIKEN cDNA 4930548G14 gene	ncRNA	0.0	5.0	4.5	3.0	0.0	0.0
Merged-chr5-92455762-2	chr5	92455262	92456262	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 5 of 11)	MTA_Mm|LTR|ERVL-MaLR	-2795.0	NR_105843	102466159.0		NR_105843	ENSMUSG00000099160	Mir6415	Gm27714|mmu-mir-6415	microRNA 6415	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-137019597-2	chr2	137019097	137020097	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038641, intron 4 of 7)	RSINE1|SINE|B4	96923.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-79563755-2	chr14	79563255	79564255	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286412, intron 3 of 7)	RSINE1|SINE|B4	-23905.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17721020-1	chr12	17720520	17721520	+	609.0	f1_balb.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	30211.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	17.0	18.5	22.5	0.0	6.0	4.5
Merged-chr5-134686934-2	chr5	134686434	134687434	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010717, intron 1 of 15)	intron (NM_010717, intron 1 of 15)	1656.0	NM_010717	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99918670-1	chr7	99918170	99919170	+	609.0	f1_balb.idr	TTS (NM_001164258)	TTS (NM_001164258)	59452.0	NM_001164258	446101.0	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	0.0	4.0	0.0	0.0	0.0	0.0
Merged-chr4-32551527-2	chr4	32551027	32552027	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109661, intron 2 of 4)	B3|SINE|B2	20135.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	0.0	6.0	2.5	0.0	1.0	0.0
Merged-chr16-4551169-4	chr16	4550619	4551619	+	608.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031182, intron 4 of 6)	B3|SINE|B2	8601.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-52618751-3	chr12	52618227	52619227	+	608.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-16405.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	0.5	1.0	2.0	0.5	1.5	2.0
Merged-chr14-27347477-3	chr14	27346983	27347983	+	608.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	11446.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	5.5	0.5	0.5	5.5	4.0	4.5
Merged-chr7-25086992-2	chr7	25086492	25087492	+	608.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	10183.0	NR_105855	102465968.0		NR_105855	ENSMUSG00000098441	Mir6537	Gm27808|mmu-mir-6537	microRNA 6537	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-166168755-2	chr1	166168255	166169255	+	608.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	38534.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4995654-2	chr7	4995154	4996154	+	608.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_026741, intron 1 of 1)	intron (NM_026741, intron 1 of 1)	447.0	NM_026741	68490.0	Mm.76400	NM_026741	ENSMUSG00000051550	Zfp579	1110003A17Rik|Znf579	zinc finger protein 579	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-163964297-2	chr1	163963797	163964797	+	608.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357049, intron 17 of 24)	intron (NM_001357049, intron 17 of 24)	30499.0	NM_001357049	381306.0	Mm.28152	NM_201364	ENSMUSG00000041406	BC055324	-	cDNA sequence BC055324	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34797932-2	chr2	34797356	34798356	+	608.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_145522, intron 1 of 7)	ID4|SINE|ID	2056.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60695814-2	chr18	60695313	60696313	+	608.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348100, intron 10 of 14)	intron (NM_001348100, intron 10 of 14)	31753.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	1.0	0.0	1.0	1.0	0.0	3.5
Merged-chr15-103314516-2	chr15	103314016	103315016	+	608.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013866, exon 8 of 8)	3' UTR (NM_013866, exon 8 of 8)	-4078.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-26212981-2	chr11	26212454	26213454	+	608.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-2378.0	NR_027973	70626.0	Mm.379180	NM_027486		5730522E02Rik	-	RIKEN cDNA 5730522E02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78520617-2	chr9	78520117	78521117	+	608.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR51A_Mm|LTR|ERVK?	-38893.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128536048-2	chr4	128535548	128536548	+	608.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281955, intron 56 of 70)	intron (NM_001281955, intron 56 of 70)	74050.0	NM_177758	269585.0	Mm.153291	NM_177758	ENSMUSG00000061894	Zscan20	C130001F22|Zfp31|Zkscan20	zinc finger and SCAN domains 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40346658-3	chr9	40346075	40347075	+	608.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357619)	promoter-TSS (NM_001357619)	-330.0	NM_001357619	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr19-51037014-2	chr19	51036512	51037512	+	608.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-358366.0	NM_001290356	58178.0	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding	2.5	0.0	0.0	2.0	0.0	0.0
Merged-chr7-69993149-3	chr7	69992649	69993649	+	608.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	344673.0	NR_131145	624549.0	Mm.116344	NR_131144	ENSMUSG00000109097	Gm29683	Gm44536	predicted gene, 29683	ncRNA	0.0	1.0	1.5	0.0	0.0	1.0
Merged-chr14-50829065-1	chr14	50828565	50829565	+	608.666687	f1_balb.idr	intron (NM_009351, intron 48 of 54)	intron (NM_009351, intron 48 of 54)	21149.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	0.0	10.5	3.5	0.0	3.5	0.5
Merged-chr2-102863735-3	chr2	102863281	102864281	+	608.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 2 of 13)	intron (NM_001039150, intron 2 of 13)	37884.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6273955-3	chr11	6273463	6274463	+	608.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134020, intron 3 of 4)	intron (NM_134020, intron 3 of 4)	874.0	NM_134020	103694.0	Mm.254495	NM_134020	ENSMUSG00000004394	Tmed4	1110014L17Rik|AI326346	transmembrane p24 trafficking protein 4	protein-coding	5.5	21.5	3.0	3.0	19.5	7.0
Merged-chr2-167706356-2	chr2	167705856	167706856	+	608.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15179.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102685882-2	chr2	102685355	102686355	+	608.666626	f0_balb.idr|f1_balb.idr	intron (NM_001077514, intron 1 of 10)	intron (NM_001077514, intron 1 of 10)	-20583.0	NM_011393	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.0	3.0	0.0	1.0	1.0	0.0
Merged-chr9-78358277-2	chr9	78357721	78358721	+	608.666626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	9978.0	NM_025274	434423.0	Mm.139314	NM_025274	ENSMUSG00000060461	Dppa5a	AA536857|Dppa5|Esg1|ecat2	developmental pluripotency associated 5A	protein-coding	0.0	3.0	0.0	0.0	6.0	1.0
Merged-chr10-120744544-2	chr10	120744044	120745044	+	608.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21188.0	NR_038000	70874.0	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20475029-3	chr10	20474529	20475529	+	608.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347366, intron 2 of 11)	intron (NM_001347366, intron 2 of 11)	73299.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102963874-2	chr15	102963374	102964374	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2922.0	NM_010462	209448.0	Mm.31665	NM_010462	ENSMUSG00000022484	Hoxc10	AI506621|Hox-3.6	homeobox C10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77439853-2	chr11	77439353	77440353	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 12 of 14)	B4|SINE|B4	-24060.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-18436279-2	chr18	18435779	18436779	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-855289.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-26721834-2	chr16	26721334	26722334	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_105063, intron 2 of 2)	Lx5|LINE|L1	33668.0	NR_105063	100504628.0	Mm.393275	NR_105063	ENSMUSG00000092545	Gm20319	-	predicted gene, 20319	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-178332724-2	chr1	178332224	178333224	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_149827, intron 6 of 16)	intron (NR_149827, intron 6 of 16)	5091.0	NM_016805	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108119128-2	chr12	108118628	108119628	+	608.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_028262, exon 7 of 13)	exon (NM_028262, exon 7 of 13)	60156.0	NM_028262	52690.0	Mm.159185	NM_028262	ENSMUSG00000056770	Setd3	2610102I01Rik|2610305M23Rik|6030490B17Rik|D12Ertd771e	SET domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27302870-2	chr2	27302370	27303370	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 3 of 29)	ORR1D1|LTR|ERVL-MaLR	-55567.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93326616-2	chr10	93326111	93327111	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9208.0	NR_152777	102635316.0	Mm.404570	NR_152777	ENSMUSG00000111531	Gm32688	-	predicted gene, 32688	ncRNA	3.5	1.0	0.0	4.5	0.0	1.0
Merged-chr5-88567439-2	chr5	88566939	88567939	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289774, intron 1 of 17)	B1_Mur2|SINE|Alu	2399.0	NM_001289775	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132225368-2	chr2	132224868	132225868	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	22420.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100088824-2	chr12	100088324	100089324	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23507.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46483618-2	chr17	46483118	46484118	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162864, intron 2 of 14)	intron (NM_001162864, intron 2 of 14)	4057.0	NM_001162864	106763.0	Mm.297613	NM_175351	ENSMUSG00000015599	Ttbk1	AU017937|AW048023|C330008L01Rik	tau tubulin kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-82225135-2	chr12	82224635	82225635	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 1 of 23)	intron (NM_001167983, intron 1 of 23)	55119.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-46924007-2	chr14	46923495	46924495	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	30933.0	NR_105813	102465206.0		NR_105813	ENSMUSG00000099036	Mir378c	Gm27930|mmu-mir-378c	microRNA 378c	ncRNA	32.0	42.5	29.0	18.0	19.5	23.5
Merged-chr17-85091951-2	chr17	85091451	85092451	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028576, intron 1 of 10)	MTE2b|LTR|ERVL-MaLR	1251.0	NM_028576	73582.0	Mm.260753	NM_028576	ENSMUSG00000071037	Camkmt	1700106N22Rik|AI480743|AV099781|CLNMT|CaM KMT	calmodulin-lysine N-methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-13895576-2	chr3	13895076	13896076	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357034, intron 2 of 7)	L1_Mus3|LINE|L1	-50729.0	NM_001163329	76897.0	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3205398-2	chr8	3204898	3205898	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330056, intron 3 of 21)	MTD|LTR|ERVL-MaLR	74219.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84442865-2	chr10	84442365	84443365	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2394.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120140916-2	chr10	120140416	120141416	+	608.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028679)	TTS (NM_028679)	-27951.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	0.5	3.0	8.5	3.0	6.0	0.5
Merged-chr4-11385659-2	chr4	11385159	11386159	+	608.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001290383, exon 2 of 16)	exon (NM_001290383, exon 2 of 16)	1119.0	NM_001347052	207920.0	Mm.387719	NM_194055	ENSMUSG00000040728	Esrp1	2210008M09Rik|A630065D16|BC031468|Rbm35a	epithelial splicing regulatory protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67040615-2	chr15	67040115	67041115	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70974.0	NM_008681	17988.0	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	1.5	0.0	1.5	0.0	0.0	3.5
Merged-chr3-107094235-1	chr3	107093735	107094735	+	608.5	f0_balb.idr	Intergenic	Intergenic	-7332.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0.0	2.5	3.5	2.0	0.0	3.5
Merged-chr12-118836766-2	chr12	118836266	118837266	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9563.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3425567-2	chr2	3425067	3426067	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302674, intron 2 of 13)	L1ME3|LINE|L1	1436.0	NM_001302684	227525.0	Mm.23483	NM_146114	ENSMUSG00000026648	Dclre1c	9930121L06Rik|AI661365|Art|Snm1l	DNA cross-link repair 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-124803654-2	chr4	124803154	124804154	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008636, intron 1 of 10)	intron (NM_008636, intron 1 of 10)	1105.0	NM_008636	17764.0	Mm.272397	NM_008636	ENSMUSG00000028890	Mtf1	MTF-1|Thyls	metal response element binding transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62511402-2	chr4	62510902	62511902	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276446, intron 7 of 11)	B4|SINE|B4	8507.0	NM_001276446	17025.0	Mm.6988	NM_008525	ENSMUSG00000028393	Alad	ALADH|Lv	aminolevulinate, delta-, dehydratase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184616964-2	chr1	184616464	184617464	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59273.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27452542-2	chr3	27452042	27453042	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 22 of 26)	L2|LINE|L2	81191.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68916156-2	chr11	68915656	68916656	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	10925.0	NM_145746	252868.0	Mm.76826	NM_145746	ENSMUSG00000032921	Odf4	Oppo1	outer dense fiber of sperm tails 4	protein-coding	6.0	4.5	5.5	5.5	4.0	2.5
Merged-chr1-77824650-2	chr1	77824150	77825150	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-309562.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156328525-2	chr2	156328025	156329025	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027585, intron 3 of 12)	intron (NM_027585, intron 3 of 12)	-15821.0	NM_020255	19018.0	Mm.389346	NM_020255	ENSMUSG00000046229	Scand1	2310003H23Rik|Leap1|PGC-2|Ppargc2	SCAN domain-containing 1	protein-coding	0.0	2.5	0.0	0.0	1.0	1.5
Merged-chr2-91282508-2	chr2	91282008	91283008	+	608.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001311144, exon 6 of 9)	exon (NM_001311144, exon 6 of 9)	17393.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79524362-2	chr11	79523862	79524862	+	608.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077496)	promoter-TSS (NM_001077496)	-600.0	NM_001077496	216984.0	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	3.0	28.5	16.0	17.0	15.0	8.5
Merged-chr7-127302722-2	chr7	127302222	127303222	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253873, intron 7 of 30)	B4A|SINE|B4	6462.0	NM_001253874	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26253891-2	chr2	26253391	26254391	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16492.0	NM_001302956	227638.0	Mm.116769	NM_153559	ENSMUSG00000036327	Qsox2	BC030934|Qscn6l1|Soxn	quiescin Q6 sulfhydryl oxidase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127212000-2	chr7	127211500	127212500	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016754, intron 1 of 6)	intron (NM_016754, intron 1 of 6)	392.0	NM_016754	17907.0	Mm.14526	NM_016754	ENSMUSG00000030672	Mylpf	2410014J02Rik|MLC-2|Mlc2	myosin light chain, phosphorylatable, fast skeletal muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66659125-2	chr7	66658625	66659625	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080443, intron 5 of 5)	intron (NM_080443, intron 5 of 5)	30436.0	NM_080443	117589.0	Mm.34785	NM_080443	ENSMUSG00000030509	Asb7	AI449039|Asb-7|D030055C23Rik	ankyrin repeat and SOCS box-containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-62717898-2	chr1	62717398	62718398	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 1 of 16)	intron (NM_001077404, intron 1 of 16)	14581.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28969822-2	chr7	28969322	28970322	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7490.0	NM_001360548	60595.0	Mm.81144	NM_021895	ENSMUSG00000054808	Actn4	C77391	actinin alpha 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70774027-2	chr8	70773527	70774527	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008841, intron 2 of 15)	intron (NM_008841, intron 2 of 15)	2685.0	NM_008841	18709.0	Mm.12945	NM_008841	ENSMUSG00000031834	Pik3r2	p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding	0.5	1.0	0.0	0.0	0.0	3.5
Merged-chr9-78517616-2	chr9	78517116	78518116	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-35892.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-28816105-2	chr3	28815605	28816605	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	10597.0	NM_026517	68028.0	Mm.21724	NM_026517	ENSMUSG00000039221	Rpl22l1	3110001N18Rik|AU041196	ribosomal protein L22 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-72662390-2	chr9	72661890	72662890	+	608.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010890)	promoter-TSS (NM_010890)	59.0	NM_010890	17999.0	Mm.279923	NM_010890	ENSMUSG00000032216	Nedd4	AA959633|AL023035|AU019897|E430025J12Rik|EG639396|Gm7265|KIAA0093|Nedd4-1|Nedd4a	neural precursor cell expressed, developmentally down-regulated 4	protein-coding	0.0	0.0	0.0	0.0	1.5	2.0
Merged-chr5-81426101-2	chr5	81425601	81426601	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198702, intron 6 of 27)	RMER1B|Other|Other	404508.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-153625736-2	chr3	153625236	153626236	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 1 of 4)	intron (NM_011372, intron 1 of 4)	99397.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40165168-2	chr10	40164668	40165668	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22914.0	NM_001114332	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34948524-2	chr17	34948024	34949024	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	2484.0	NR_028527	100217427.0		NR_028527	ENSMUSG00000093009	Snord52	MBII-297	small nucleolar RNA, C/D box 52	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51673669-2	chr3	51673169	51674169	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_174995, intron 2 of 4)	intron (NM_174995, intron 2 of 4)	12490.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100620284-2	chr11	100619784	100620784	+	608.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019795)	promoter-TSS (NM_019795)	-116.0	NM_019795	56354.0	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	17.5	70.5	37.0	16.5	70.5	37.0
Merged-chr2-35498648-2	chr2	35498148	35499148	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37199.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-43221288-2	chr15	43220788	43221788	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-50470.0	NM_001357956	239405.0	Mm.193274	NM_172815	ENSMUSG00000051920	Rspo2	2610028F08Rik|AA673245|D430027K22|ftls	R-spondin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69272001-1	chr8	69271501	69272501	+	608.5	f1_balb.idr	intron (NM_172491, intron 1 of 5)	intron (NM_172491, intron 1 of 5)	921.0	NM_172491	211135.0	Mm.294970	NM_172491	ENSMUSG00000079038	D130040H23Rik	-	RIKEN cDNA D130040H23 gene	protein-coding	5.0	3.0	2.0	9.0	13.0	17.5
Merged-chr1-170709116-2	chr1	170708616	170709616	+	608.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081304, exon 16 of 16)	3' UTR (NM_001081304, exon 16 of 16)	64584.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80768230-2	chr7	80767730	80768730	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 3 of 37)	intron (NM_016721, intron 3 of 37)	35101.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	4.0	4.0	1.5	0.0	2.0	2.5
Merged-chr2-30689802-2	chr2	30689302	30690302	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11791.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95144822-2	chr10	95144322	95145322	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_131146, intron 2 of 3)	intron (NR_131146, intron 2 of 3)	1003.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49857262-2	chr16	49856762	49857762	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 1 of 9)	intron (NM_010581, intron 1 of 9)	1608.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21502418-2	chr14	21501918	21502918	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_017479, intron 1 of 16)	intron (NM_017479, intron 1 of 16)	2633.0	NM_017479	54169.0	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54302232-2	chr13	54301732	54302732	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69117.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62181758-2	chr10	62181258	62182258	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12469.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55641180-4	chr16	55640663	55641663	+	608.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	146432.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12238024-2	chr15	12237524	12238524	+	608.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356498, intron 6 of 15)	intron (NM_001356498, intron 6 of 15)	32996.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-87863412-3	chr10	87862913	87863913	+	608.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111274, intron 1 of 4)	intron (NM_001111274, intron 1 of 4)	2302.0	NM_001111276	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67770933-3	chr18	67770412	67771412	+	608.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3964.0	NM_001360934	72124.0	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	3.5	16.0	16.5	14.0	21.0	10.5
Merged-chr10-45058311-3	chr10	45057805	45058805	+	608.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-8909.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91755332-3	chr1	91754795	91755795	+	608.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46166.0	NM_007855	13345.0	Mm.9474	NM_007855	ENSMUSG00000007805	Twist2	Dermo1|bHLHa39	twist basic helix-loop-helix transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96503467-3	chr10	96502961	96503961	+	608.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113540.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121496208-2	chr10	121495708	121496708	+	608.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19958.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	23.5	23.0	21.0	21.0	45.0	28.5
Merged-chr2-178869429-2	chr2	178868929	178869929	+	608.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	438914.0	NM_198656	381409.0	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26510881-2	chr17	26510394	26511394	+	608.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2422.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	5.5	17.5	0.5	7.0	11.5	7.0
Merged-chr16-85281906-2	chr16	85281412	85282412	+	608.25	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108205.0	NM_001198826	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	0.5	7.0	5.0	0.5	4.0	1.5
Merged-chr15-59815695-2	chr15	59815195	59816195	+	608.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20736.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25098256-2	chr8	25097756	25098756	+	608.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 1 of 11)	intron (NM_031257, intron 1 of 11)	3555.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-58874151-2	chr9	58873651	58874651	+	608.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001042752)	TTS (NM_001042752)	50639.0	NM_001081192	330953.0	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15065172-2	chr17	15064672	15065672	+	608.125	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001034891)	TTS (NM_001034891)	12113.0	NM_001034891	381062.0	Mm.393767	NM_183133	ENSMUSG00000036552	Ermard	2210404J11Rik|2410011O22Rik|AI448938	ER membrane associated RNA degradation	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-32866633-3	chr13	32866100	32867100	+	608.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15415.0	NM_025429	66222.0	Mm.20144	NM_025429	ENSMUSG00000044734	Serpinb1a	1190005M04Rik|AI325983|EI|EIA|ELANH2|LEI|M/NEI|MNEI|PI2	serine (or cysteine) peptidase inhibitor, clade B, member 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115471990-2	chr11	115471490	115472490	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359606, intron 3 of 3)	intron (NM_001359606, intron 3 of 3)	-3677.0	NM_177778	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-30276989-2	chr4	30276489	30277489	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A1|LTR|ERVK	-387607.0	NR_040655	75332.0	Mm.108636	NR_040655		4930556G01Rik	-	RIKEN cDNA 4930556G01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134141892-1	chr6	134141392	134142392	+	608.0	f0_balb.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	106192.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	3.5	14.5	14.0	0.0	20.0	8.5
Merged-chr2-140109019-2	chr2	140108519	140109519	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-42214.0	NR_110351	75812.0	Mm.293449	NM_175225	ENSMUSG00000039033	Tasp1	4930485D02Rik|AW986064	taspase, threonine aspartase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-89626670-2	chr17	89626170	89627170	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	247429.0	NR_045952	100043904.0	Mm.396198	NR_045952		Gm4719	-	predicted gene 4719	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125636191-1	chr7	125635691	125636691	+	608.0	f1_balb.idr	Intergenic	Intergenic	32762.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	1.0	0.0	2.0	4.5	2.5	0.5
Merged-chr2-93850778-1	chr2	93850278	93851278	+	608.0	f0_balb.idr	promoter-TSS (NM_001290782)	promoter-TSS (NM_001290782)	-835.0	NM_001290782	329470.0	Mm.486910	NM_183220	ENSMUSG00000040272	Accs	2610203E10Rik|Phacs	1-aminocyclopropane-1-carboxylate synthase (non-functional)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170251786-2	chr2	170251304	170252304	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4_19-int|LTR|ERVK	-104557.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115774015-1	chr6	115773515	115774515	+	608.0	f0_balb.idr	promoter-TSS (NM_025958)	promoter-TSS (NM_025958)	-542.0	NM_025958	67088.0	Mm.277683	NM_025958	ENSMUSG00000030319	Cand2	2210404G23Rik|Tp120b|mKIAA0667	cullin-associated and neddylation-dissociated 2 (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64446514-2	chr9	64446014	64447014	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134399, intron 1 of 24)	intron (NM_001134399, intron 1 of 24)	60888.0	NM_001134399	214058.0	Mm.127721	NM_172522	ENSMUSG00000036466	Megf11	2410080H04Rik|D130061K05	multiple EGF-like-domains 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47952815-2	chr6	47952315	47953315	+	608.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178898)	promoter-TSS (NM_178898)	-575.0	NM_178898	101197.0	Mm.241063	NM_178898	ENSMUSG00000045466	Zfp956	AI894139	zinc finger protein 956	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152271520-1	chr3	152271020	152272020	+	608.0	f1_balb.idr	Intergenic	Intergenic	-5170.0	NM_199465	68810.0	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.0	0.0	0.0	2.0	0.0	0.0
Merged-chr18-52760339-1	chr18	52759839	52760839	+	608.0	f0_balb.idr	Intergenic	MER92C|LTR|ERV1	-7472.0	NM_026408	67847.0	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32830851-1	chr18	32830351	32831351	+	608.0	f1_c57bl6.idr	intron (NR_045381, intron 2 of 4)	intron (NR_045381, intron 2 of 4)	-6374.0	NM_001110016	225348.0	Mm.38816	NM_144863	ENSMUSG00000038299	Wdr36	5730444A13Rik|Ta-wdrp	WD repeat domain 36	protein-coding	4.5	0.5	1.5	4.0	1.5	2.0
Merged-chr1-24249286-1	chr1	24248786	24249786	+	608.0	f1_balb.idr	intron (NM_001290691, intron 31 of 31)	intron (NM_001290691, intron 31 of 31)	54083.0	NM_001290691	12839.0	Mm.154662	NM_007740	ENSMUSG00000026147	Col9a1	Col9a-1	collagen, type IX, alpha 1	protein-coding	4.0	0.0	0.0	0.0	0.5	0.0
Merged-chr17-29315877-2	chr17	29315377	29316377	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-3005.0	NM_023734	74116.0	Mm.30950	NM_023734	ENSMUSG00000024011	Pi16	1200009H11Rik|Cripi|PI-16	peptidase inhibitor 16	protein-coding	0.0	0.5	0.0	0.0	0.0	1.0
Merged-chr4-115880895-2	chr4	115880395	115881395	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3505.0	NM_001039124	654462.0	Mm.388913	NM_001039124	ENSMUSG00000073774	Kncn	Kino|L5	kinocilin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-30772459-1	chr10	30771959	30772959	+	608.0	f0_balb.idr	intron (NM_001358842, intron 1 of 14)	intron (NM_001358842, intron 1 of 14)	30867.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	10.0	22.0	3.5	5.0	12.0	7.0
Merged-chr5-123889768-1	chr5	123889268	123890268	+	608.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-9748.0	NM_175520	243270.0	Mm.33362	NM_175520	ENSMUSG00000049241	Hcar1	Gpr81	hydrocarboxylic acid receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29826346-2	chr2	29825846	29826846	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1043.0	NM_026615	68205.0	Mm.20273	NM_026615	ENSMUSG00000069020	Urm1	2900073H19Rik	ubiquitin related modifier 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11761731-1	chr11	11761231	11762231	+	608.0	f1_balb.idr	intron (NM_001025597, intron 7 of 7)	intron (NM_001025597, intron 7 of 7)	47231.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	0.0	23.5	28.0	7.5	15.5	18.0
Merged-chr12-100726798-2	chr12	100726298	100727298	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1678.0	NM_153587	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	2.5	0.0	0.0	0.0	3.0	1.0
Merged-chr9-15305200-1	chr9	15304700	15305700	+	608.0	f0_balb.idr	intron (NM_001199484, intron 1 of 8)	intron (NM_001199484, intron 1 of 8)	967.0	NM_001199485	70984.0	Mm.261842	NM_133732	ENSMUSG00000031938	4931406C07Rik	-	RIKEN cDNA 4931406C07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153551013-2	chr1	153550513	153551513	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1299.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36518524-3	chr5	36518025	36519025	+	608.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 7 of 13)	intron (NM_133910, intron 7 of 13)	12098.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	4.5	6.5	1.5	1.0	17.5	5.0
Merged-chr2-152803210-2	chr2	152802710	152803710	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	25279.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100305471-2	chr15	100304971	100305971	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027334, intron 1 of 1)	intron (NM_027334, intron 1 of 1)	654.0	NM_027334	70152.0	Mm.488086	NM_027334	ENSMUSG00000054619	Mettl7a1	2210414H16Rik|3300001H21Rik|Aam-B|Mettl7a|UbiE1	methyltransferase like 7A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17912817-2	chr17	17912317	17913317	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24993.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-70566958-2	chr18	70566458	70567458	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1334.0	NM_001311071	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46378246-1	chr18	46377746	46378746	+	608.0	f0_balb.idr	Intergenic	Intergenic	-66318.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-46599330-1	chr12	46598830	46599830	+	608.0	f1_balb.idr	Intergenic	Intergenic	219445.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	2.5	0.0	3.0	2.5	0.0	1.5
Merged-chr6-89354245-2	chr6	89353745	89354745	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008881, intron 3 of 31)	intron (NM_008881, intron 3 of 31)	8368.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25827164-2	chr17	25826664	25827664	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173741, intron 4 of 8)	intron (NM_173741, intron 4 of 8)	-1879.0	NM_028101	72106.0	Mm.277599	NM_028101	ENSMUSG00000025736	Jmjd8	2610003J06Rik	jumonji domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134471159-1	chr6	134470659	134471659	+	608.0	f1_c57bl6.idr	intron (NM_008514, intron 12 of 22)	intron (NM_008514, intron 12 of 22)	56731.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	9.0	8.5	3.5	0.0	5.0	8.0
Merged-chr4-133873839-1	chr4	133873339	133874339	+	608.0	f0_balb.idr	intron (NM_009097, intron 2 of 21)	G-rich|Low_complexity|Low_complexity	892.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	37.0	150.0	65.5	52.0	109.5	70.5
Merged-chr11-118983634-2	chr11	118983134	118984134	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4547.0	NM_001359574	238011.0	Mm.244114	NM_001030291	ENSMUSG00000046697	Enpp7	Alk-SMase|Gm254	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-24674822-2	chr18	24674322	24675322	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026779, intron 6 of 14)	ID_B1|SINE|B4	21131.0	NM_026779	68591.0	Mm.28252	NM_026779	ENSMUSG00000039616	Mocos	1110018O12Rik|HMCS|MCS|MOS	molybdenum cofactor sulfurase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101950351-2	chr5	101949851	101950851	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 9 of 66)	intron (NM_172882, intron 9 of 66)	119570.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	8.5	6.5	36.5	4.5	19.0	13.0
Merged-chr2-75681514-2	chr2	75681014	75682014	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010902, intron 1 of 4)	intron (NM_010902, intron 1 of 4)	22224.0	NR_033513	627828.0	Mm.459502	NR_033513	ENSMUSG00000092086	Gm6793	EG627828	heterogeneous nuclear ribonucleoprotein A3 pseudogene	pseudo	3.0	5.5	3.5	0.0	0.5	8.0
Merged-chr13-42827978-2	chr13	42827467	42828467	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005740, intron 1 of 12)	PB1D7|SINE|Alu	-38280.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-41342742-2	chr12	41342242	41343242	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	143315.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-71041106-1	chr16	71040606	71041606	+	608.0	f1_balb.idr	Intergenic	L1_Mus1|LINE|L1	-89970.0	NR_040561	70972.0	Mm.399391	NR_040561		4931420L22Rik	-	RIKEN cDNA 4931420L22 gene	ncRNA	0.0	3.0	0.0	7.5	7.0	2.5
Merged-chr8-14938738-1	chr8	14938238	14939238	+	608.0	f0_balb.idr	intron (NM_001037736, intron 7 of 27)	MTD|LTR|ERVL-MaLR	27075.0	NM_001037736	234094.0	Mm.240298	NM_172751	ENSMUSG00000071176	Arhgef10	6430549H08Rik|mKIAA0294	Rho guanine nucleotide exchange factor (GEF) 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19422160-2	chr7	19421660	19422660	+	608.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073014)	promoter-TSS (NR_073014)	-743.0	NR_073015	100503495.0	Mm.410762	NR_073014	ENSMUSG00000040705	A930016O22Rik	-	RIKEN cDNA A930016O22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117716508-2	chr10	117716008	117717008	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5750.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-105898079-1	chr14	105897579	105898579	+	608.0	f0_balb.idr	Intergenic	Intergenic	-1260.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-82752766-1	chr6	82752266	82753266	+	608.0	f0_balb.idr	intron (NM_013820, intron 2 of 17)	intron (NM_013820, intron 2 of 17)	21688.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	58.0	91.5	55.5	42.5	89.0	32.0
Merged-chr5-32132602-2	chr5	32132102	32133102	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3870.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38455783-1	chr18	38455283	38456283	+	608.0	f0_balb.idr	intron (NM_001355749, intron 5 of 7)	intron (NM_001355749, intron 5 of 7)	36876.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53062848-2	chr4	53062348	53063348	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 30 of 49)	intron (NM_013454, intron 30 of 49)	50968.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	4.5	0.0	0.0	4.5
Merged-chr17-57361698-2	chr17	57361198	57362198	+	608.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001355723, exon 2 of 22)	exon (NM_001355723, exon 2 of 22)	3012.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56468048-2	chr18	56467535	56468535	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	35903.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	6.0	3.5	5.0	0.0	10.5	12.0
Merged-chr1-172555586-1	chr1	172555086	172556086	+	608.0	f1_c57bl6.idr	promoter-TSS (NM_177723)	promoter-TSS (NM_177723)	-352.0	NM_177723	240916.0	Mm.71940	NM_177723	ENSMUSG00000049598	Vsig8	A030011M19|EG240916	V-set and immunoglobulin domain containing 8	protein-coding	0.0	0.0	1.5	0.0	0.0	1.0
Merged-chr16-32563486-1	chr16	32562986	32563986	+	608.0	f0_balb.idr	Intergenic	Intergenic	-45410.0	NM_011638	22042.0	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43832221-2	chr4	43831721	43832721	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	4296.0	NM_019475	100040268.0	Mm.317638	NM_019475	ENSMUSG00000111611	Olfr157	Mor262-12|Olfr37c|Or37c	olfactory receptor 157	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97189462-1	chr7	97188962	97189962	+	608.0	f1_balb.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	107711.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	20.0	4.5	8.5	0.5	10.0	4.5
Merged-chr5-28080084-2	chr5	28079584	28080584	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8672.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	0.5	8.0	3.5	0.0	0.0	0.0
Merged-chr2-5811168-1	chr2	5810668	5811668	+	608.0	f0_balb.idr	intron (NM_133837, intron 6 of 12)	intron (NM_133837, intron 6 of 12)	-33866.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	12.5	19.5	6.5	10.0	8.0	5.0
Merged-chr1-143916115-2	chr1	143915615	143916615	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	88034.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81418680-2	chr10	81418180	81419180	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 2 of 8)	intron (NM_026756, intron 2 of 8)	-2383.0	NR_106141	102465778.0		NR_106141	ENSMUSG00000105379	Mir1191b	mmu-mir-1191b	microRNA 1191b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-24471696-2	chr18	24471196	24472196	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026529, intron 2 of 4)	intron (NM_026529, intron 2 of 4)	825.0	NM_026529	68046.0	Mm.276574	NM_026529	ENSMUSG00000024273	2700062C07Rik	AI195775|C87515	RIKEN cDNA 2700062C07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76002001-2	chr14	76001501	76002501	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026816, intron 2 of 7)	ORR1B1|LTR|ERVL-MaLR	8864.0	NM_026816	68705.0	Mm.20415	NM_026816	ENSMUSG00000067995	Gtf2f2	1110031C13Rik|AI326315	general transcription factor IIF, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-9033891-2	chr12	9033391	9034391	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029321, intron 1 of 2)	B1_Mur1|SINE|Alu	3894.0	NM_029321	75516.0	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34125349-2	chr17	34124846	34125846	+	608.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360530)	promoter-TSS (NM_001360530)	-172.0	NM_001360530	14998.0	Mm.16373	NM_010386	ENSMUSG00000037649	H2-DMa	H-2Ma|H2-Ma	histocompatibility 2, class II, locus DMa	protein-coding	7.0	11.0	13.5	2.0	30.5	4.5
Merged-chr8-108576244-2	chr8	108575744	108576744	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_077224, intron 1 of 1)	intron (NR_077224, intron 1 of 1)	8433.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	5.0	0.5	3.0	4.0	0.0	0.0
Merged-chr7-132658113-1	chr7	132657613	132658613	+	608.0	f0_balb.idr	intron (NM_029609, intron 6 of 6)	intron (NM_029609, intron 6 of 6)	47470.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44272807-2	chr10	44272307	44273307	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358596, intron 1 of 6)	MTD|LTR|ERVL-MaLR	4468.0	NM_001358596	11793.0	Mm.22264	NM_053069	ENSMUSG00000038160	Atg5	2010107M05Rik|3110067M24Rik|AW319544|Apg5l|Atg5l|C88337|Paddy	autophagy related 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139644144-1	chr4	139643644	139644644	+	608.0	f1_c57bl6.idr	TTS (NR_105987)	TTS (NR_105987)	102.0	NR_105987	102465617.0		NR_105987	ENSMUSG00000098569	Mir7020	Gm27759|mmu-mir-7020	microRNA 7020	ncRNA	0.5	0.0	4.5	0.0	0.0	0.0
Merged-chr1-171407434-2	chr1	171406936	171407936	+	608.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001005508, exon 11 of 12)	exon (NM_001005508, exon 11 of 12)	-3877.0	NM_001305678	22278.0	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	2.0	10.0	5.0	6.0	3.5	7.5
Merged-chr15-25604529-2	chr15	25604029	25605029	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-18021.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-5102221-1	chr7	5101721	5102721	+	608.0	f1_c57bl6.idr	Intergenic	Intergenic	14690.0	NM_001145013	192658.0	Mm.28764	NM_138954	ENSMUSG00000035191	Rfpl4	D7Ertd486e|Rfpl4a	ret finger protein-like 4	protein-coding	12.0	5.0	15.0	18.5	28.5	7.5
Merged-chr11-116098657-2	chr11	116098157	116099157	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11578.0	NM_001205081	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-38621017-2	chr5	38620507	38621507	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59412.0	NM_011715	22388.0	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	1.5	13.5	2.0	0.0	0.0	1.0
Merged-chr5-81044644-2	chr5	81044144	81045144	+	608.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_198702, intron 1 of 27)	L1MA5|LINE|L1	23051.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	16.0	27.0	38.0	32.0	61.0	32.0
Merged-chr4-135877606-2	chr4	135877129	135878129	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTG)n|Simple_repeat|Simple_repeat	-3783.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-156560076-2	chr3	156559576	156560576	+	608.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040400, exon 2 of 2)	non-coding (NR_040400, exon 2 of 2)	1611.0	NR_040398	329782.0	Mm.183459	NR_040398	ENSMUSG00000085084	4930570G19Rik	C630015G22	RIKEN cDNA 4930570G19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-136798802-1	chr7	136798302	136799302	+	608.0	f0_balb.idr	Intergenic	Intergenic	-88198.0	NR_046021	621677.0	Mm.207290	NR_046021	ENSMUSG00000110101	Gm6249	EG621677	predicted gene 6249	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-13010813-2	chr17	13010313	13011313	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013671, intron 3 of 4)	B2_Mm1t|SINE|B2	2974.0	NM_013671	20656.0	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41830917-2	chr19	41830417	41831417	+	608.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008043, exon 1 of 1)	exon (NM_008043, exon 1 of 1)	947.0	NM_008043	14296.0	Mm.4573	NM_008043	ENSMUSG00000067199	Frat1	AW060382	frequently rearranged in advanced T cell lymphomas	protein-coding	0.0	3.5	14.0	7.5	5.0	2.5
Merged-chr14-50833554-2	chr14	50833054	50834054	+	608.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009351, exon 43 of 55)	exon (NM_009351, exon 43 of 55)	25638.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	1.0	1.5	3.0	8.5	0.0	3.0
Merged-chr1-41105463-2	chr1	41104963	41105963	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75789.0	NR_040475	74897.0	Mm.243822	NR_040475	ENSMUSG00000104072	4930448I06Rik	-	RIKEN cDNA 4930448I06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95383873-1	chr11	95383373	95384373	+	608.0	f1_balb.idr	promoter-TSS (NM_001357797)	promoter-TSS (NM_001357797)	-983.0	NM_016752	110172.0	Mm.4593	NM_016752	ENSMUSG00000020873	Slc35b1	UGTrel1|Ugalt2	solute carrier family 35, member B1	protein-coding	1.0	2.5	0.0	1.0	2.0	0.0
Merged-chr10-87906492-1	chr10	87905992	87906992	+	608.0	f0_balb.idr	intron (NM_001111274, intron 2 of 4)	intron (NM_001111274, intron 2 of 4)	45381.0	NM_001111276	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35882472-2	chr17	35881972	35882972	+	608.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026987, exon 5 of 20)	exon (NM_026987, exon 5 of 20)	2694.0	NM_026987	69192.0	Mm.390986	NM_026987	ENSMUSG00000024422	Dhx16	2410006N22Rik|DBP2|Ddx16|mKIAA0577	DEAH (Asp-Glu-Ala-His) box polypeptide 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83986974-1	chr8	83986474	83987474	+	608.0	f1_balb.idr	intron (NM_008854, intron 4 of 9)	intron (NM_008854, intron 4 of 9)	10091.0	NM_001277898	18747.0	Mm.19111	NM_008854	ENSMUSG00000005469	Prkaca	PKCD|Pkaca	protein kinase, cAMP dependent, catalytic, alpha	protein-coding	0.5	9.0	4.5	4.0	9.0	4.0
Merged-chr2-11431324-2	chr2	11430824	11431824	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-32824.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70112500-2	chr12	70112000	70113000	+	608.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104398)	promoter-TSS (NR_104398)	-465.0	NR_104397	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	0.0	15.0	8.5	9.0	6.0	23.0
Merged-chr2-163589424-1	chr2	163588924	163589924	+	608.0	f0_balb.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-12890.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165433070-1	chr1	165432570	165433570	+	608.0	f1_balb.idr	intron (NM_028759, intron 1 of 18)	RMER3D-int|LTR|ERVK	27393.0	NM_028759	74106.0	Mm.227605	NM_028759	ENSMUSG00000026571	Dcaf6	1200006M05Rik|Iqwd1|PC326	DDB1 and CUL4 associated factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-119897533-2	chr7	119897033	119898033	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029610, intron 1 of 3)	intron (NM_029610, intron 1 of 3)	1241.0	NM_029610	73919.0	Mm.46381	NM_029610	ENSMUSG00000030922	Lyrm1	1110065L10Rik|2310004B22Rik|4930404J24Rik	LYR motif containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-78013635-2	chr18	78013135	78014135	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195633, intron 30 of 43)	intron (NM_001195633, intron 30 of 43)	43633.0	NM_001101038	620235.0	Mm.35607	NM_001101038	ENSMUSG00000091055	Siglec15	Cd33l3|EG620235|SIGLEC-I	sialic acid binding Ig-like lectin 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30858956-2	chr5	30858456	30859456	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133350, intron 1 of 6)	intron (NM_133350, intron 1 of 6)	-2851.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-118460230-1	chr13	118459730	118460730	+	608.0	f1_balb.idr	Intergenic	MamSINE1|SINE|tRNA	-72978.0	NM_021556	59054.0	Mm.143810	NM_021556	ENSMUSG00000021731	Mrps30	2610020A16Rik|AA968347|PAP|Pdcd9	mitochondrial ribosomal protein S30	protein-coding	0.0	6.5	0.5	0.0	4.5	0.5
Merged-chr17-20450496-2	chr17	20449996	20450996	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	30740.0	NM_001104570	627805.0	Mm.469853	NM_001104570	ENSMUSG00000091805	Vmn2r108	EG627805	vomeronasal 2, receptor 108	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16109267-1	chr1	16108767	16109767	+	608.0	f1_balb.idr	intron (NM_133832, intron 2 of 5)	intron (NM_133832, intron 2 of 5)	3385.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0.5	1.0	0.0	0.5	6.0	0.0
Merged-chr16-91621920-2	chr16	91621420	91622420	+	608.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010256, exon 21 of 22)	exon (NM_010256, exon 21 of 22)	-2921.0	NM_138664	246738.0	Mm.101927	NM_138664	ENSMUSG00000039763	Dnajc28	BC020175|ORF28	DnaJ heat shock protein family (Hsp40) member C28	protein-coding	0.0	1.5	0.0	0.0	1.5	0.0
Merged-chr1-171470262-1	chr1	171469762	171470762	+	608.0	f1_balb.idr	Intergenic	ID_B1|SINE|B4	32701.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	0.5	7.5	8.0	2.0	12.5	10.0
Merged-chr10-41304280-1	chr10	41303780	41304780	+	608.0	f0_balb.idr	Intergenic	Intergenic	-1039.0	NM_133999	103199.0	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128724250-1	chr2	128723750	128724750	+	608.0	f0_balb.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	25335.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	22.0	20.5	20.5	12.0	33.5	22.0
Merged-chr5-115434969-2	chr5	115434469	115435469	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008629, intron 5 of 14)	intron (NM_008629, intron 5 of 14)	5284.0	NM_008629	17690.0	Mm.5077	NM_008629	ENSMUSG00000054256	Msi1	Msi1h|Musahi1|m-Msi-1	musashi RNA-binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23498854-1	chr16	23498354	23499354	+	608.0	f1_c57bl6.idr	intron (NM_001359083, intron 2 of 10)	MIR3|SINE|MIR	21961.0	NM_008555	17174.0	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22693549-2	chr8	22693049	22694049	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159774, intron 4 of 21)	intron (NM_001159774, intron 4 of 21)	13034.0	NM_010546	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	0.0	0.0	0.0	0.0	10.5	0.0
Merged-chr3-8768313-2	chr3	8767813	8768813	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101275.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122485619-2	chr14	122485119	122486119	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 1 of 24)	intron (NR_153443, intron 1 of 24)	1254.0	NR_153443	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147422184-2	chr4	147421684	147422684	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	-131093.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32943576-1	chr12	32943076	32944076	+	608.0	f1_c57bl6.idr	intron (NR_044986, intron 2 of 5)	intron (NR_044986, intron 2 of 5)	10213.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	7.0	5.0	8.0	8.0	1.0	7.0
Merged-chr8-111731508-3	chr8	111731009	111732009	+	607.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009954, intron 1 of 6)	intron (NM_009954, intron 1 of 6)	627.0	NM_001198839	12927.0	Mm.3758	NM_009954	ENSMUSG00000031955	Bcar1	AI385681|Cas|Crkas	breast cancer anti-estrogen resistance 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8920394-2	chr3	8919894	8920894	+	607.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025434, intron 1 of 2)	intron (NM_025434, intron 1 of 2)	3463.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135363692-2	chr5	135363192	135364192	+	607.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178240, intron 2 of 5)	intron (NM_178240, intron 2 of 5)	-6261.0	NM_001359617	100609.0	Mm.281189	NM_145414	ENSMUSG00000000916	Nsun5	9830109N13Rik|AI326939|Nol1r|Wbscr20|Wbscr20a	NOL1/NOP2/Sun domain family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68301176-2	chr10	68300709	68301709	+	607.833374	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	19933.0	NR_045357	75148.0	Mm.23505	NR_045357	ENSMUSG00000112157	4930545H06Rik	-	RIKEN cDNA 4930545H06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57641137-2	chr9	57640637	57641637	+	607.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 2 of 14)	intron (NM_001304761, intron 2 of 14)	4516.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52631155-2	chr13	52630655	52631655	+	607.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 7 of 13)	intron (NM_011518, intron 7 of 13)	34273.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98969103-2	chr7	98968603	98969603	+	607.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 12 of 14)	intron (NM_178635, intron 12 of 14)	130258.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90524025-2	chr2	90523525	90524525	+	607.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-44851.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	30.0	25.0	16.5	11.0	19.5	17.0
Merged-chr10-111365928-2	chr10	111365428	111366428	+	607.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	67249.0	NM_027914	71769.0	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83661148-2	chr7	83660648	83661648	+	607.724976	f1_balb.idr|f1_c57bl6.idr	exon (NM_001360087, exon 12 of 19)	exon (NM_001360087, exon 12 of 19)	-5653.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116106993-3	chr3	116106503	116107503	+	607.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22685.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	9.0	25.0	25.0	4.0	16.0	26.5
Merged-chr5-146778471-3	chr5	146777948	146778948	+	607.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	16508.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	9.0	9.5	9.5	7.0	11.5	12.5
Merged-chr16-49819702-3	chr16	49819219	49820219	+	607.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	-35935.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153492730-3	chr1	153492250	153493250	+	607.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5090.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122949260-2	chr5	122948760	122949760	+	607.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003953, intron 6 of 22)	intron (NM_001003953, intron 6 of 22)	39839.0	NM_001003953	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	0.0	0.0	0.0	0.0	13.5	0.0
Merged-chr5-38558997-2	chr5	38558497	38559497	+	607.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011715, intron 2 of 14)	(TG)n|Simple_repeat|Simple_repeat	2598.0	NM_011715	22388.0	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	1.0	2.5	15.0	2.5	2.5	10.5
Merged-chr8-122711893-2	chr8	122711386	122712386	+	607.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12777.0	NM_009824	12398.0	Mm.194339	NM_009824	ENSMUSG00000006362	Cbfa2t3	A630044F12Rik|AI465270|AW229127|Cbfa2t3h|ETO-2|Eto2|MTGR2	core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	protein-coding	0.0	6.0	4.0	16.5	1.0	3.5
Merged-chr15-12433115-2	chr15	12432615	12433615	+	607.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081064, intron 5 of 23)	intron (NM_001081064, intron 5 of 23)	111619.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167771218-2	chr2	167770718	167771718	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80041.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51533805-2	chr10	51533297	51534297	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY5_LTR|LTR|ERVK	42899.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139308693-2	chr7	139308193	139309193	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60211.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10309349-2	chr17	10308849	10309849	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021881, intron 1 of 6)	intron (NM_021881, intron 1 of 6)	10012.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-24442202-2	chr18	24441702	24442702	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13032.0	NR_029573	387182.0		NR_029573	ENSMUSG00000065532	Mir187	Mirn187|mir-187|mmu-mir-187	microRNA 187	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11777025-2	chr19	11776525	11777525	+	607.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_152220)	TTS (NM_152220)	6610.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	2.0	12.5	4.5	4.5	2.5	7.5
Merged-chr18-36122414-1	chr18	36121914	36122914	+	607.5	f0_balb.idr	intron (NM_001167891, intron 1 of 9)	intron (NM_001167891, intron 1 of 9)	16211.0	NR_015571	74966.0	Mm.379238	NM_030089		4930471G03Rik	1700007N01Rik	RIKEN cDNA 4930471G03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr9-70827234-2	chr9	70826734	70827734	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	ID_B1|SINE|B4	107574.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	3.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118627696-2	chr9	118627196	118628196	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 2 of 27)	RLTR17B_Mm|LTR|ERVK	20987.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31760765-2	chr2	31760265	31761265	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	592.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101316812-2	chr15	101316312	101317312	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23600.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12216461-2	chr18	12215959	12216959	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008720, intron 4 of 24)	RLTR11C_MM|LTR|ERVK	19927.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	3.0	0.5	0.0	2.0	1.5	0.5
Merged-chr5-81036842-2	chr5	81036342	81037342	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198702, intron 1 of 27)	MTD|LTR|ERVL-MaLR	15249.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.5	9.0	17.5	14.5	8.0	5.0
Merged-chr2-28193260-2	chr2	28192760	28193760	+	607.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001038614, exon 1 of 4)	5' UTR (NM_001038614, exon 1 of 4)	167.0	NM_001038614	56177.0	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19865348-2	chr7	19864848	19865848	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-4049.0	NM_001033419	330483.0	Mm.260192	NM_001033419	ENSMUSG00000014686	Ceacam16	Gm769	carcinoembryonic antigen-related cell adhesion molecule 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-131800816-3	chr7	131800250	131801250	+	607.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-165710.0	NM_173410	233919.0	Mm.208740	NM_173410	ENSMUSG00000040125	Gpr26	9630036A11Rik|A730021D22	G protein-coupled receptor 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109238351-2	chr3	109237856	109238856	+	607.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-102327.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	5.0	8.5	4.5	14.5	6.0	6.0
Merged-chr1-36563140-2	chr1	36562640	36563640	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 14 of 14)	intron (NM_001126046, intron 14 of 14)	-4759.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112146051-2	chr12	112145551	112146551	+	607.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001097621)	promoter-TSS (NM_001097621)	-157.0	NM_001097621	668303.0	Mm.313104	NM_001097621	ENSMUSG00000021294	Kif26a	mKIAA1236	kinesin family member 26A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44142754-3	chr16	44142224	44143224	+	607.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028108, intron 1 of 4)	B1_Mus1|SINE|Alu	2915.0	NM_028108	72117.0	Mm.278726	NM_028108	ENSMUSG00000022698	Naa50	2600005K24Rik|2810441M03Rik|AW112078|Mak3|Mak3p|Nat13|Nat5|San	N(alpha)-acetyltransferase 50, NatE catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46327495-2	chr17	46326995	46327995	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347396, intron 1 of 19)	intron (NM_001347396, intron 1 of 19)	528.0	NM_001347396	224814.0	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27030367-2	chr17	27029895	27030895	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027544, intron 1 of 5)	intron (NM_027544, intron 1 of 5)	1136.0	NM_027544	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12923312-2	chr13	12922812	12923812	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	82018.0	NM_031191	18811.0	Mm.88796	NM_031191	ENSMUSG00000079092	Prl2c2	Ghd2|MRP-1|PLF-1|Plf|Plf1	prolactin family 2, subfamily c, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-118387719-2	chr1	118387219	118388219	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-1339.0	NM_001359329	76707.0	Mm.138740	NM_029709	ENSMUSG00000064302	Clasp1	1700030C23Rik|5730583A19Rik|B130045P17Rik|CLASP1alpha	CLIP associating protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44069578-2	chr9	44069078	44070078	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016808, intron 1 of 12)	intron (NM_016808, intron 1 of 12)	149.0	NM_016808	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	0.0	0.5	0.0	3.0	0.5	0.0
Merged-chr11-121708786-2	chr11	121708286	121709286	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144797, intron 2 of 3)	intron (NM_144797, intron 2 of 3)	6359.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86997558-2	chr11	86997058	86998058	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3796.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120561150-2	chr8	120560650	120561650	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 2 of 15)	intron (NM_001145896, intron 2 of 15)	22454.0	NR_106159	102466849.0		NR_106159	ENSMUSG00000098280	Mir7687	Gm27573|mmu-mir-7687	microRNA 7687	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99812449-2	chr15	99811949	99812949	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113545, intron 4 of 10)	intron (NM_001113545, intron 4 of 10)	7700.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	1.0	0.0	0.5	1.5	0.0	0.0
Merged-chr4-48074934-2	chr4	48074434	48075434	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015743, intron 7 of 7)	intron (NM_015743, intron 7 of 7)	23688.0	NM_001307989	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-59653727-2	chr5	59653227	59654227	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	332275.0	NR_040683	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19872656-2	chr7	19872156	19873156	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-11357.0	NM_001033419	330483.0	Mm.260192	NM_001033419	ENSMUSG00000014686	Ceacam16	Gm769	carcinoembryonic antigen-related cell adhesion molecule 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105300523-2	chr8	105300023	105301023	+	607.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_148952, exon 6 of 10)	exon (NM_148952, exon 6 of 10)	2860.0	NM_148952	104394.0	Mm.34554	NM_148952	ENSMUSG00000014859	E2f4	2010111M04Rik|AI427446	E2F transcription factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121677562-2	chr11	121677062	121678062	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4411.0	NM_178664	210004.0	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141047513-2	chr7	141047013	141048013	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR40b|LTR|ERVL	-13761.0	NM_177897	330671.0	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-28115058-2	chr3	28114558	28115558	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 22 of 25)	intron (NM_008875, intron 22 of 25)	130887.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-74809232-3	chr13	74808725	74809725	+	607.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301153)	promoter-TSS (NM_001301153)	-465.0	NM_001301153	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	21.0	37.5	33.5	5.5	16.5	23.5
Merged-chr3-69690452-2	chr3	69689952	69690952	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31603.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	10.5	21.0	6.0	7.0	14.5	3.5
Merged-chr15-95954763-2	chr15	95954263	95955263	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 15 of 19)	intron (NM_175344, intron 15 of 19)	-124691.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50932345-2	chr14	50931845	50932845	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	-1496.0	NM_001310507	219024.0	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161|Pip4p1	transmembrane protein 55b	protein-coding	12.0	36.5	18.0	10.5	21.0	18.5
Merged-chr9-96447736-2	chr9	96447236	96448236	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30939.0	NM_011279	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86591233-2	chr11	86590733	86591733	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 10 of 11)	intron (NM_001356531, intron 10 of 11)	-7075.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154161620-2	chr4	154161120	154162120	+	607.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026388)	promoter-TSS (NM_026388)	-936.0	NM_026388	67808.0	Mm.288737	NM_026388	ENSMUSG00000029030	Tprgl	1200015A19Rik|Svap30|Tprg1l|mover	transformation related protein 63 regulated like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87765444-2	chr3	87764944	87765944	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_152799, intron 1 of 24)	intron (NM_152799, intron 1 of 24)	3509.0	NM_001289600	73182.0	Mm.158962	NM_028460	ENSMUSG00000028073	Pear1	3110045G13Rik|Jedi-1|Megf12	platelet endothelial aggregation receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107685057-2	chr13	107684557	107685557	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2340.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	6.5	3.5	2.5	0.0	0.5	2.5
Merged-chr4-147916527-2	chr4	147916027	147917027	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011122, intron 16 of 18)	intron (NM_011122, intron 16 of 18)	-11618.0	NM_001285921	170731.0	Mm.154312	NM_133201	ENSMUSG00000029020	Mfn2	D630023P19Rik|Fzo	mitofusin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95716298-2	chr8	95715798	95716798	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035123, intron 1 of 6)	CpG	385.0	NM_001035123	66083.0	Mm.261321	NM_001035123	ENSMUSG00000031671	Setd6	0610039J04Rik|3110004G14Rik|AI413388|C76402	SET domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120165086-2	chr8	120164586	120165586	+	607.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163761, exon 12 of 12)	3' UTR (NM_001163761, exon 12 of 12)	12383.0	NM_001033980	436062.0	Mm.334852	NM_001033980	ENSMUSG00000042269	Fam92b	1700120B06Rik	family with sequence similarity 92, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141541451-2	chr4	141540951	141541951	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-2854.0	NM_019763	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	24.0	78.0	43.0	32.0	79.5	49.5
Merged-chr8-105356100-2	chr8	105355600	105356600	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081332, intron 5 of 15)	intron (NM_001081332, intron 5 of 15)	7842.0	NM_001081332	277973.0	Mm.334766	NM_001081332	ENSMUSG00000014786	Slc9a5	Gm696	solute carrier family 9 (sodium/hydrogen exchanger), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-78461536-2	chr1	78461036	78462036	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001278075, intron 13 of 17)	intron (NM_001278075, intron 13 of 17)	27361.0	NR_102758	23874.0	Mm.17898	NM_011811	ENSMUSG00000026245	Farsb	C76708|Farsa|Farsl|Farslb|Frsb	phenylalanyl-tRNA synthetase, beta subunit	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr6-83457604-2	chr6	83457104	83458104	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1212.0	NM_001347313	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110589866-2	chr12	110589366	110590366	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1508.0	NR_033340	319786.0	Mm.129691	NR_033340		B930059L03Rik	-	RIKEN cDNA B930059L03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44410204-2	chr7	44409704	44410704	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26078.0	NM_016663	20981.0	Mm.4824	NM_016663	ENSMUSG00000030731	Syt3	AI385753|sytIII	synaptotagmin III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122720715-2	chr7	122720215	122721215	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019430, intron 1 of 3)	intron (NM_019430, intron 1 of 3)	48971.0	NM_019430	54376.0	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86566833-2	chr11	86566322	86567322	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199046, intron 9 of 9)	intron (NM_001199046, intron 9 of 9)	17336.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-115130320-3	chr13	115129822	115130822	+	607.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28358.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-143922084-2	chr1	143921582	143922582	+	607.5	f0_balb.idr|f0_c57.idr	Intergenic	B3A|SINE|B2	82067.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-23037538-2	chr2	23037038	23038038	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	intron (NM_001077190, intron 1 of 10)	2703.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-73474535-2	chr5	73474035	73475035	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6520.0	NM_001190734	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-51704782-3	chr12	51704267	51705267	+	607.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001329698, intron 1 of 5)	intron (NM_001329698, intron 1 of 5)	-12853.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	0.0	2.0	3.0	0.0	0.0	5.5
Merged-chr7-102193997-3	chr7	102193511	102194511	+	607.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287167, intron 4 of 19)	B1F2|SINE|Alu	15856.0	NM_001287167	269966.0	Mm.439800	NM_022979	ENSMUSG00000063550	Nup98	4732457F17|AI849286|Nup96	nucleoporin 98	protein-coding	0.0	0.5	1.5	0.0	0.0	5.5
Merged-chr18-46530673-2	chr18	46530173	46531173	+	607.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4702.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100694484-2	chr11	100693984	100694984	+	607.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_030150)	TTS (NM_030150)	9787.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-48998056-2	chr11	48997556	48998556	+	607.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-5810.0	NM_011579	21822.0	Mm.15793	NM_011579	ENSMUSG00000078922	Tgtp1	Gtp2|Irgb6|Mg21|Tgtp	T cell specific GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7417414-3	chr19	7416839	7417839	+	607.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175381)	promoter-TSS (NM_175381)	-286.0	NM_175381	108899.0	Mm.386838	NM_175381	ENSMUSG00000053080	2700081O15Rik	AI255177|AI848741|AW742297	RIKEN cDNA 2700081O15 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138067-1	chr1	137567	138567	+	607.333313	f1_c57bl6.idr	Intergenic	Intergenic	3533431.0	NM_001011874	497097.0	Mm.454496	NM_001011874	ENSMUSG00000051951	Xkr4	AY534250|Gm210|XRG4|mKIAA1889	X-linked Kx blood group related 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-104029821-3	chr14	104029307	104030307	+	607.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2665.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-132437114-1	chr5	132436614	132437614	+	607.333313	f0_balb.idr	intron (NM_177047, intron 1 of 19)	intron (NM_177047, intron 1 of 19)	105229.0	NM_177047	319974.0	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153526840-3	chr1	153526334	153527334	+	607.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028749, intron 5 of 11)	intron (NM_028749, intron 5 of 11)	22880.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125177182-1	chr8	125176682	125177682	+	607.25	f0_balb.idr	intron (NM_174854, intron 9 of 12)	intron (NM_174854, intron 9 of 12)	122987.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	0.0	2.5	11.0	13.0	22.5	11.5
Merged-chr9-47744944-2	chr9	47744444	47745444	+	607.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	73264.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	10.0	42.5	29.0	92.5	202.0	89.0
Merged-chr11-61505889-2	chr11	61505389	61506389	+	607.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330780, intron 1 of 5)	intron (NM_001330780, intron 1 of 5)	745.0	NM_001330781	27078.0	Mm.261226	NM_013717	ENSMUSG00000001039	B9d1	AW045994|B9|Eppb9	B9 protein domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57200700-1	chr16	57200200	57201200	+	607.25	f0_balb.idr	intron (NM_026254, intron 5 of 17)	MIRc|SINE|MIR	771.0	NM_001358434	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	2.5	6.5	0.0	1.5	5.5	1.5
Merged-chr12-80793592-2	chr12	80793090	80794090	+	607.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	3058.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53128766-3	chr15	53128267	53129267	+	607.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	217416.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152815327-2	chr1	152814827	152815827	+	607.233337	f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 3 of 15)	intron (NM_010877, intron 3 of 15)	15174.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-21931208-3	chr4	21930791	21931791	+	607.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175234)	promoter-TSS (NM_175234)	-35.0	NM_175234	76132.0	Mm.159689	NM_175234	ENSMUSG00000028246	Faxc	6230409E13Rik|AW742931	failed axon connections homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93913013-2	chr16	93912513	93913513	+	607.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	16554.0	NM_001165925	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	0.5	0.0	2.5	0.0	0.0	2.5
Merged-chr2-68872626-2	chr2	68872126	68873126	+	607.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	intron (NM_001347161, intron 1 of 10)	11185.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-26793204-2	chr10	26792704	26793704	+	607.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	20692.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6315945-2	chr17	6315445	6316445	+	607.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166629, intron 1 of 4)	intron (NM_001166629, intron 1 of 4)	1529.0	NM_001166629	100310872.0	Mm.381893	NM_001166629	ENSMUSG00000092074	Dynlt1a	-	dynein light chain Tctex-type 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-61042559-2	chr16	61042059	61043059	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-437028.0	NM_007938	13840.0	Mm.455790	NM_007938	ENSMUSG00000055540	Epha6	Ehk2|Hek12|m-ehk2	Eph receptor A6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30024694-2	chr14	30024194	30025194	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175343, intron 1 of 7)	L1MB4|LINE|L1	2061.0	NM_175343	218865.0	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	2.0	1.0	1.0	0.0	0.0	0.0
Merged-chr11-82993004-2	chr11	82992504	82993504	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-1174.0	NM_172796	237886.0	Mm.270253	NM_172796	ENSMUSG00000069793	Slfn9	9830137M10Rik	schlafen 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-105334563-1	chr2	105334063	105335063	+	607.0	f0_balb.idr	intron (NM_028747, intron 3 of 3)	intron (NM_028747, intron 3 of 3)	64756.0	NM_009037	19672.0	Mm.4876	NM_009037	ENSMUSG00000005973	Rcn1	Rcn	reticulocalbin 1	protein-coding	0.0	0.0	1.0	3.0	0.0	1.0
Merged-chr16-70922507-2	chr16	70922007	70923007	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-208569.0	NR_040561	70972.0	Mm.399391	NR_040561		4931420L22Rik	-	RIKEN cDNA 4931420L22 gene	ncRNA	0.5	0.0	0.5	4.0	4.0	3.5
Merged-chr5-41841410-2	chr5	41840910	41841910	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081422, intron 1 of 26)	intron (NM_001081422, intron 1 of 26)	2905.0	NM_001310601	665775.0	Mm.158726	NM_001081422	ENSMUSG00000061755	Bod1l	A230054D04Rik|AI853319|FAM44A|mKIAA1327	biorientation of chromosomes in cell division 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27168726-2	chr7	27168226	27169226	+	607.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029391, exon 8 of 8)	3' UTR (NM_029391, exon 8 of 8)	-1924.0	NM_053208	112406.0	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-40956933-2	chr15	40956433	40957433	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356998, intron 4 of 6)	intron (NM_001356998, intron 4 of 6)	-216768.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112999922-2	chr12	112999422	113000422	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028193, intron 1 of 17)	CpG	699.0	NM_028193	72308.0	Mm.196721	NM_028193	ENSMUSG00000011158	Brf1	2510002F24Rik|GTF3B|TAF3C|TAFIII90|TFIIIB90|mTFIIIB90	BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-119052561-1	chr14	119052061	119053061	+	607.0	f0_balb.idr	intron (NM_001081252, intron 16 of 38)	ORR1A2-int|LTR|ERVL-MaLR	-46404.0	NR_153786	102635192.0	Mm.398079	NR_153786		Gm16835	-	predicted gene, 16835	ncRNA	0.5	3.0	5.5	6.5	12.0	1.0
Merged-chr19-47651006-1	chr19	47650506	47651506	+	607.0	f0_balb.idr	intron (NM_007732, intron 45 of 52)	intron (NM_007732, intron 45 of 52)	41036.0	NM_007732	12821.0	Mm.1225	NM_007732	ENSMUSG00000025064	Col17a1	BP180|Bpag|Bpag2	collagen, type XVII, alpha 1	protein-coding	0.0	0.0	3.0	5.0	0.0	0.0
Merged-chr17-26640884-2	chr17	26640384	26641384	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 8 of 9)	intron (NM_026170, intron 8 of 9)	-35512.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167266021-2	chr2	167265521	167266521	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25484.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-20227814-1	chr12	20227314	20228314	+	607.0	f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	587965.0	NR_015521	69513.0	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46513128-2	chr19	46512628	46513628	+	607.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_053100, exon 3 of 6)	exon (NM_053100, exon 3 of 6)	11480.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70711220-2	chr8	70710720	70711720	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7323.0	NM_001195253	100502950.0	Mm.52981	NM_001195253	ENSMUSG00000095026	Gm3336	100041434|2410018E23Rik	predicted gene 3336	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105286499-1	chr4	105285999	105286999	+	607.0	f1_c57bl6.idr	Intergenic	Intergenic	129152.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	1.5	2.0	13.0	5.0	2.5	9.5
Merged-chr11-33725750-2	chr11	33725250	33726250	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190885, intron 1 of 8)	intron (NM_001190885, intron 1 of 8)	117835.0	NM_027398	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45578677-2	chr19	45578177	45579177	+	607.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001356947)	TTS (NM_001356947)	18092.0	NM_172639	226162.0	Mm.21978	NM_172639	ENSMUSG00000041035	Dpcd	Ndac	deleted in primary ciliary dyskinesia	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73733467-2	chr13	73732967	73733967	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30193.0	NM_001360694	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83733563-1	chr8	83733063	83734063	+	607.0	f1_balb.idr	exon (NM_001163031, exon 4 of 18)	exon (NM_001163031, exon 4 of 18)	7748.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	5.5	4.5	5.5	19.5	11.0	5.0
Merged-chr17-64740842-2	chr17	64740342	64741342	+	607.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008549, exon 20 of 22)	exon (NM_008549, exon 20 of 22)	-26269.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47794313-2	chr17	47793813	47794813	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8569.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.0	9.0	10.5	1.0	5.5	3.5
Merged-chr2-129195758-2	chr2	129195258	129196258	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-3015.0	NM_015747	20515.0	Mm.272675	NM_015747	ENSMUSG00000027397	Slc20a1	AI607883|Glvr-1|Glvr1	solute carrier family 20, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29991000-1	chr17	29990500	29991500	+	607.0	f0_balb.idr	Intergenic	Intergenic	-14039.0	NM_148926	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-28076136-1	chr5	28075636	28076636	+	607.0	f0_balb.idr	intron (NM_153526, intron 4 of 4)	intron (NM_153526, intron 4 of 4)	4724.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54843661-2	chr14	54843161	54844161	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16829.0	NM_183174	239099.0	Mm.280994	NM_183174	ENSMUSG00000057156	Homez	mKIAA1443	homeodomain leucine zipper-encoding gene	protein-coding	0.0	4.0	3.5	0.5	1.0	0.0
Merged-chr1-135256598-2	chr1	135256098	135257098	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007921, intron 4 of 8)	intron (NM_007921, intron 4 of 8)	1874.0	NM_001163131	13710.0	Mm.441439	NM_007921	ENSMUSG00000003051	Elf3	ESE-1|ESX|jen	E74-like factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139220769-2	chr5	139220269	139221269	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359496, intron 2 of 20)	intron (NM_001359496, intron 2 of 20)	5611.0	NM_001256118	77053.0	Mm.210845	NM_024451	ENSMUSG00000036817	Sun1	4632417G13Rik|5730434D03Rik|Unc84a|mKIAA0810	Sad1 and UNC84 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-19887163-2	chr18	19886663	19887663	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	114934.0	NM_007882	13507.0	Mm.89935	NM_007882	ENSMUSG00000059898	Dsc3	5430426I24Rik	desmocollin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-15756165-2	chr6	15755665	15756665	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	35504.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-105329447-1	chr14	105328947	105329947	+	607.0	f1_c57bl6.idr	Intergenic	Intergenic	70774.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	5.0	5.0	6.5	22.0	2.0	1.0
Merged-chr12-16883449-1	chr12	16882949	16883949	+	607.0	f1_balb.idr	Intergenic	Intergenic	-11529.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	16.5	44.0	24.5	23.0	29.0	32.0
Merged-chr1-105104911-2	chr1	105104411	105105411	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-251096.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53083237-2	chr4	53082737	53083737	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 15 of 49)	intron (NM_013454, intron 15 of 49)	71357.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76856603-1	chr14	76856103	76857103	+	607.0	f1_balb.idr	Intergenic	Intergenic	96472.0	NR_153763	73883.0	Mm.489041	NR_153763		4930431P22Rik	-	RIKEN cDNA 4930431P22 gene	ncRNA	10.5	12.0	6.5	7.0	29.5	12.5
Merged-chr10-53346769-3	chr10	53346287	53347287	+	607.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001141927)	TTS (NM_001141927)	9101.0	NM_001141927	18821.0	Mm.34145	NM_023129	ENSMUSG00000038583	Pln	Plb	phospholamban	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-26201758-1	chr1	26201258	26202258	+	607.0	f1_balb.idr	Intergenic	RMER1A|Other|Other	-372051.0	NM_175642	210933.0	Mm.336569	NM_175642	ENSMUSG00000033569	Adgrb3	A830096D10Rik|Bai3	adhesion G protein-coupled receptor B3	protein-coding	3.5	1.5	2.5	0.0	0.0	0.0
Merged-chr13-54580982-2	chr13	54580482	54581482	+	607.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019968, exon 4 of 4)	3' UTR (NM_019968, exon 4 of 4)	5969.0	NM_019968	56795.0	Mm.89484	NM_019968	ENSMUSG00000025870	Arl10	Arl10a|Arm1	ADP-ribosylation factor-like 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-69452517-1	chr18	69452017	69453017	+	607.0	f1_balb.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	106357.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19066209-2	chr10	19065709	19066709	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-50799.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.0	1.0	0.5	0.0	1.0	0.5
Merged-chr7-19666975-2	chr7	19666475	19667475	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1945.0	NM_019649	56457.0	Mm.290960	NM_019649	ENSMUSG00000002981	Clptm1	HS9|N14	cleft lip and palate associated transmembrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155108026-3	chr1	155107543	155108543	+	607.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8407.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	2.5	1.5	4.0	2.5	0.0	1.0
Merged-chr1-59480198-1	chr1	59479698	59480698	+	607.0	f1_c57bl6.idr	Intergenic	Intergenic	-1949.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	3.0	19.0	3.0	0.0	7.5	7.5
Merged-chr12-31918263-2	chr12	31917763	31918763	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163126, intron 19 of 22)	MTE2a|LTR|ERVL-MaLR	31982.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	0.0	1.5	5.5	4.5	3.0	1.0
Merged-chr4-118094959-2	chr4	118094459	118095459	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285520, intron 2 of 11)	L1M5|LINE|L1	39987.0	NM_001285520	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75519383-2	chr10	75518883	75519883	+	607.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026095, exon 2 of 4)	exon (NM_026095, exon 2 of 4)	1341.0	NM_026095	67332.0	Mm.45151	NM_026095	ENSMUSG00000020180	Snrpd3	1700043E15Rik|2310009E13Rik|AW046420|SMD3	small nuclear ribonucleoprotein D3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-153953045-2	chr4	153952545	153953545	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_B|LTR|ERVK	-2569.0	NR_040670	407793.0	Mm.260950	NR_040670		BC039966	-	cDNA sequence BC039966	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67810564-2	chr17	67810064	67811064	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008480, intron 53 of 62)	intron (NM_008480, intron 53 of 62)	113299.0	NM_008480	16772.0	Mm.303386	NM_008480	ENSMUSG00000032796	Lama1	AA408497|Lama	laminin, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44499507-2	chr7	44499007	44500007	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357651, intron 2 of 3)	intron (NM_001357651, intron 2 of 3)	2919.0	NM_028169	75538.0	Mm.258841	NM_028169	ENSMUSG00000051113	Fam71e1	0610007G24Rik|1700021N13Rik|1700021P22Rik|GARI-L5	family with sequence similarity 71, member E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-47776051-1	chr11	47775551	47776551	+	607.0	f0_balb.idr	Intergenic	Intergenic	-396749.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-43441346-2	chr8	43440846	43441846	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	86791.0	NM_001009547	382007.0	Mm.55952	NM_001009547	ENSMUSG00000063900	Adam26b	-	a disintegrin and metallopeptidase domain 26B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116037448-1	chr11	116036948	116037948	+	607.0	f1_c57bl6.idr	intron (NM_001286006, intron 1 of 15)	intron (NM_001286006, intron 1 of 15)	7132.0	NM_172569	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119458415-2	chr11	119457915	119458915	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32820.0	NR_153849	78439.0	Mm.440446	NR_153849	ENSMUSG00000109408	A930037H05Rik	Gm44935	RIKEN cDNA A930037H05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17359489-1	chr6	17358989	17359989	+	607.0	f0_balb.idr	Intergenic	Intergenic	51849.0	NM_001243064	12389.0	Mm.28278	NM_007616	ENSMUSG00000007655	Cav1	Cav|Cav-1	caveolin 1, caveolae protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32984063-2	chr4	32983563	32984563	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027491, intron 1 of 6)	intron (NM_027491, intron 1 of 6)	1065.0	NM_027491	52187.0	Mm.300814	NM_027491	ENSMUSG00000028278	Rragd	5730543C08Rik|AI467523|C030003H22Rik|D4Ertd174e	Ras-related GTP binding D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-105282881-1	chr9	105282381	105283381	+	607.0	f0_balb.idr	intron (NM_172461, intron 12 of 15)	intron (NM_172461, intron 12 of 15)	112406.0	NM_172461	208583.0	Mm.347509	NM_172461	ENSMUSG00000035032	Nek11	4932416N14Rik	NIMA (never in mitosis gene a)-related expressed kinase 11	protein-coding	5.5	0.0	1.5	0.0	3.0	2.0
Merged-chr7-100276647-2	chr7	100276148	100277148	+	607.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027629, exon 14 of 14)	3' UTR (NM_027629, exon 14 of 14)	-8872.0	NM_177161	320452.0	Mm.150294	NM_177161	ENSMUSG00000051048	P4ha3	D930031A02Rik	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide III	protein-coding	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr5-19151021-2	chr5	19150521	19151521	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75534.0	NR_102341	70832.0	Mm.398993	NR_102341	ENSMUSG00000097626	4921504A21Rik	-	RIKEN cDNA 4921504A21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11679414-2	chr11	11678914	11679914	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6511.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153123421-2	chr2	153122921	153123921	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 1 of 12)	intron (NM_001172117, intron 1 of 12)	14953.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-41888567-1	chr18	41888067	41889067	+	607.0	f0_balb.idr	intron (NM_029942, intron 5 of 6)	intron (NM_029942, intron 5 of 6)	62627.0	NM_029942	77619.0	Mm.30649	NM_029942	ENSMUSG00000056671	Prelid2	1700003A01Rik|C330008K14Rik	PRELI domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128145863-3	chr6	128145357	128146357	+	607.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2279.0	NM_001356301	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81871527-1	chr15	81871027	81872027	+	607.0	f1_c57bl6.idr	promoter-TSS (NM_080633)	promoter-TSS (NM_080633)	365.0	NM_026737	68479.0	Mm.271715	NM_026737	ENSMUSG00000061360	Phf5a	1110007B08Rik	PHD finger protein 5A	protein-coding	24.0	87.5	42.5	24.5	107.5	60.5
Merged-chr15-74914697-2	chr15	74914197	74915197	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32993.0	NM_025929	67038.0	Mm.154566	NM_025929	ENSMUSG00000063522	2010109I03Rik	Ly6m	RIKEN cDNA 2010109I03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100351558-2	chr11	100351058	100352058	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359052, intron 8 of 12)	intron (NM_001359052, intron 8 of 12)	4570.0	NM_001359052	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr13-105039862-1	chr13	105039362	105040362	+	607.0	f0_balb.idr	intron (NM_029879, intron 2 of 5)	intron (NM_029879, intron 2 of 5)	15068.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-6643911-2	chr13	6643411	6644411	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019703, intron 1 of 21)	intron (NM_019703, intron 1 of 21)	4860.0	NM_019703	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-28025714-2	chr3	28025214	28026214	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 3 of 25)	B4A|SINE|B4	41543.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113695411-2	chr6	113694911	113695911	+	607.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172161)	TTS (NM_172161)	-1639.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17929827-1	chr16	17929327	17930327	+	607.0	f1_c57bl6.idr	Intergenic	Intergenic	-1608.0	NM_153150	13358.0	Mm.229291	NM_153150	ENSMUSG00000003528	Slc25a1	1300019P08Rik|2610100G11Rik|AI194714|Ctp|Dgsj|Slc20a3	solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17585996-1	chr17	17585496	17586496	+	607.0	f0_balb.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	38493.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	20.0	18.5	14.5	9.0	28.0	20.5
Merged-chr2-160732126-1	chr2	160731626	160732626	+	607.0	f0_c57.idr	intron (NM_021280, intron 2 of 33)	CpG-8784	816.0	NM_021280	18803.0	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182892139-2	chr1	182891639	182892639	+	607.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001356463, exon 7 of 8)	exon (NM_001356463, exon 7 of 8)	-62649.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120030479-1	chr2	120029979	120030979	+	607.0	f1_balb.idr	exon (NM_001114637, exon 3 of 8)	exon (NM_001114637, exon 3 of 8)	-2954.0	NM_145378	211429.0	Mm.41467	NM_145378	ENSMUSG00000098488	Pla2g4b	A030011C02Rik|Gm1013|cPLA2-beta	phospholipase A2, group IVB (cytosolic)	protein-coding	0.0	12.5	0.0	2.0	0.0	0.0
Merged-chr17-34109219-1	chr17	34108719	34109719	+	607.0	f1_balb.idr	Intergenic	Intergenic	10681.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	13.0	14.5	21.5	0.5	1.0	9.5
Merged-chr4-150098182-1	chr4	150097682	150098682	+	607.0	f1_c57bl6.idr	intron (NM_177366, intron 1 of 3)	intron (NM_177366, intron 1 of 3)	10679.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	0.0	0.0	0.0	0.0	7.5	2.0
Merged-chr6-91762567-2	chr6	91762067	91763067	+	607.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001159507, exon 24 of 24)	3' UTR (NM_001159507, exon 24 of 24)	44826.0	NM_001159507	243547.0	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-33945151-1	chr1	33944651	33945651	+	607.0	f0_balb.idr	intron (NM_001276764, intron 2 of 102)	intron (NM_001276764, intron 2 of 102)	36926.0	NM_001276764	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78352870-1	chr15	78352370	78353370	+	607.0	f1_c57bl6.idr	Intergenic	Intergenic	4271.0	NR_106137	102465776.0		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	4.5	4.5	3.0	9.5	5.5	5.0
Merged-chr15-38515004-2	chr15	38514504	38515504	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301688, intron 1 of 11)	ID_B1|SINE|B4	4262.0	NM_001301688	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116485918-2	chr3	116485418	116486418	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie2b|DNA|hAT-Charlie	22257.0	NM_025517	66368.0	Mm.251228	NM_025517	ENSMUSG00000000339	Rtca	2310009A18Rik|AI450277|RPC|Rtcd1	RNA 3'-terminal phosphate cyclase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55817633-1	chr4	55817133	55818133	+	607.0	f0_balb.idr	Intergenic	Intergenic	-285158.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-55341740-1	chr18	55341240	55342240	+	607.0	f0_balb.idr	Intergenic	Intergenic	-349149.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	2.5	4.0	0.0	2.5	3.5
Merged-chr13-113511067-2	chr13	113510567	113511567	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8223.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3845785-1	chr19	3845285	3846285	+	607.0	f1_c57bl6.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	-5988.0	NM_001271496	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27260244-2	chr7	27259744	27260744	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010950, intron 1 of 9)	intron (NM_010950, intron 1 of 9)	1483.0	NM_010950	18223.0	Mm.458153	NM_010950	ENSMUSG00000063160	Numbl	nbl	numb-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54756107-2	chr14	54755619	54756619	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	25767.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	128.0	390.5	257.0	97.5	315.5	181.5
Merged-chr11-88949649-1	chr11	88949149	88950149	+	607.0	f1_balb.idr	intron (NM_029023, intron 2 of 12)	B4A|SINE|B4	5793.0	NM_029023	74617.0	Mm.34126	NM_029023	ENSMUSG00000000278	Scpep1	2410018F01Rik|4833411K15Rik|AI957256|Risc	serine carboxypeptidase 1	protein-coding	21.5	41.0	27.0	24.0	34.0	42.0
Merged-chr16-90142411-1	chr16	90141911	90142911	+	607.0	f0_balb.idr	non-coding (NR_033476, exon 1 of 1)	non-coding (NR_033476, exon 1 of 1)	174.0	NR_033476	100038709.0	Mm.484070	NR_033476		Gm10789	-	predicted gene 10789	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37352214-2	chr9	37351714	37352714	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3822.0	NM_001081429	245902.0	Mm.390150	NM_001081429	ENSMUSG00000034303	Ccdc15	A630039F14Rik|D030074L19	coiled-coil domain containing 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-52721051-2	chr15	52720551	52721551	+	607.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027212, exon 3 of 4)	exon (NM_027212, exon 3 of 4)	8606.0	NM_027212	69790.0	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-40237327-2	chr6	40236827	40237827	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004182, intron 2 of 2)	intron (NM_001004182, intron 2 of 2)	-88151.0	NM_023538	69923.0	Mm.32840	NM_023538	ENSMUSG00000029916	Agk	2610037M15Rik|6720408I04Rik|AI465370|Mulk	acylglycerol kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76692076-1	chr15	76691576	76692576	+	607.0	f1_c57bl6.idr	intron (NR_152559, intron 4 of 8)	intron (NR_152559, intron 4 of 8)	-4650.0	NM_182805	76282.0	Mm.30130	NM_182805	ENSMUSG00000022546	Gpt	1300007J06Rik|2310022B03Rik|ALT|ALT1|Gpt-1|Gpt1	glutamic pyruvic transaminase, soluble	protein-coding	4.5	0.0	0.0	0.0	0.0	0.0
Merged-chr18-85979909-2	chr18	85979409	85980409	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-415043.0	NM_001360910	246317.0	Mm.329578	NM_144946	ENSMUSG00000050321	Neto1	AI851453|Btcl1|C130005O10Rik	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91017521-2	chr2	91017021	91018021	+	607.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_017368, exon 15 of 15)	3' UTR (NM_017368, exon 15 of 15)	-18106.0	NM_009023	19400.0	Mm.1272	NM_009023	ENSMUSG00000002104	Rapsn	43kDa|Nraps|Raps|rapsyn	receptor-associated protein of the synapse	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-68726771-1	chr17	68726271	68727271	+	607.0	f1_c57bl6.idr	intron (NM_177278, intron 18 of 20)	Lx2|LINE|L1	-110365.0	NM_001206661	622645.0	Mm.86422	NM_001206661	ENSMUSG00000095407	Tmem200c	EG622645|Gm6338	transmembrane protein 200C	protein-coding	0.0	0.0	0.0	2.5	0.0	0.0
Merged-chr9-120017697-2	chr9	120017197	120018197	+	607.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011724, exon 2 of 3)	exon (NM_011724, exon 2 of 3)	5901.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	0.0	0.0	0.0	2.0	0.0	0.0
Merged-chr13-67333909-1	chr13	67333409	67334409	+	607.0	f1_c57bl6.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-1349.0	NM_177622	218314.0	Mm.289695	NM_177622	ENSMUSG00000057842	Zfp595	A230042K10Rik|Rslcan23	zinc finger protein 595	protein-coding	2.5	6.5	0.0	0.0	0.0	0.0
Merged-chr13-101655063-3	chr13	101654531	101655531	+	606.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37599.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	1.0	0.0	0.0	1.0	0.0	0.0
Merged-chr16-90214190-3	chr16	90213691	90214691	+	606.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6551.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148903162-3	chr4	148902682	148903682	+	606.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027195, intron 4 of 15)	intron (NM_027195, intron 4 of 15)	49140.0	NR_154553	108168987.0	Mm.393596	NR_154553		Gm13205	AA408865	predicted gene 13205	ncRNA	0.0	4.0	0.0	4.5	1.5	0.0
Merged-chr9-7570499-3	chr9	7570052	7571052	+	606.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310717)	promoter-TSS (NM_001310717)	-844.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45241182-3	chr2	45240759	45241759	+	606.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123817.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13851841-3	chr10	13851337	13852337	+	606.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025446, intron 1 of 5)	L2|LINE|L2	17120.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100835769-2	chr13	100835269	100836269	+	606.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-2342.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-23194331-3	chr10	23193806	23194806	+	606.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010167, intron 3 of 18)	intron (NM_010167, intron 3 of 18)	155584.0	NM_001347372	14051.0	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99239829-3	chr5	99239299	99240299	+	606.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145839, intron 4 of 13)	intron (NM_145839, intron 4 of 13)	13128.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134725457-2	chr1	134724957	134725957	+	606.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355726, intron 1 of 8)	intron (NM_001355726, intron 1 of 8)	16157.0	NM_001355726	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19703576-2	chr7	19703076	19704076	+	606.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109748, intron 5 of 8)	intron (NM_001109748, intron 5 of 8)	-4388.0	NM_009696	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116829841-2	chr11	116829298	116830298	+	606.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A1|LTR|ERVK	-1671.0	NM_001347633	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	4.0	0.0	0.0	0.5	1.0	0.0
Merged-chr12-9570161-3	chr12	9569726	9570726	+	606.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045488, exon 2 of 4)	non-coding (NR_045488, exon 2 of 4)	359.0	NR_045488	69420.0	Mm.396193	NR_045488	ENSMUSG00000099360	1700022H16Rik	-	RIKEN cDNA 1700022H16 gene	ncRNA	1.0	9.0	1.0	4.0	0.0	2.5
Merged-chr8-71540900-2	chr8	71540400	71541400	+	606.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A1|LTR|ERVK	-2030.0	NM_028617	73711.0	Mm.307770	NM_028617	ENSMUSG00000031813	Mvb12a	1110012M11Rik|Fam125a	multivesicular body subunit 12A	protein-coding	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr13-63259861-2	chr13	63259361	63260361	+	606.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	19832.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.0	0.0	3.5	3.5	5.5	0.5
Merged-chr8-88691597-3	chr8	88691097	88692097	+	606.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5431.0	NM_001128170	74256.0	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	0.0	12.0	1.0	4.0	5.0	6.0
Merged-chr1-54762734-3	chr1	54762283	54763283	+	606.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 7 of 27)	intron (NM_001081433, intron 7 of 27)	163604.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	8.0	14.5	7.0	10.5	11.0	5.5
Merged-chr1-39859457-3	chr1	39858958	39859958	+	606.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-12128.0	NR_040465	73426.0	Mm.396239	NR_040465	ENSMUSG00000101634	1700066B17Rik	-	RIKEN cDNA 1700066B17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-26354427-3	chr11	26353932	26354932	+	606.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BC1_Mm|scRNA|scRNA	-32652.0	NM_025923	67030.0	Mm.18875	NM_025923	ENSMUSG00000004018	Fancl	2010322C19Rik|AW554273|B230118H11Rik|Phf9|Pog|gcd	Fanconi anemia, complementation group L	protein-coding	1.5	1.5	6.0	1.5	3.0	2.0
Merged-chr11-63921407-2	chr11	63920926	63921926	+	606.599976	f1_balb.idr|f1_c57bl6.idr	exon (NM_018805, exon 1 of 2)	exon (NM_018805, exon 1 of 2)	858.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	0.0	2.5	3.5	0.0	0.0	0.0
Merged-chr10-93763342-2	chr10	93762835	93763835	+	606.549988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68220.0	NM_001206851	327799.0	Mm.491598	NM_183199	ENSMUSG00000020020	Usp44	E430004F17Rik	ubiquitin specific peptidase 44	protein-coding	0.0	12.0	3.0	4.0	7.0	2.5
Merged-chr7-102434219-2	chr7	102433719	102434719	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009287, intron 11 of 11)	intron (NM_009287, intron 11 of 11)	-7476.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	1.0	0.0	1.5	0.0	0.0	4.5
Merged-chr17-80899814-2	chr17	80899314	80900314	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_131127, intron 1 of 5)	intron (NR_131127, intron 1 of 5)	3021.0	NR_131127	320784.0	Mm.474182	NR_131127	ENSMUSG00000112121	C230072F16Rik	-	RIKEN cDNA C230072F16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108595811-2	chr8	108595311	108596311	+	606.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11134.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-144183579-2	chr7	144183079	144184079	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113373, intron 2 of 15)	intron (NM_001113373, intron 2 of 15)	8059.0	NM_001113373	210274.0	Mm.483624	NM_001081370	ENSMUSG00000037541	Shank2	ProSAP1|mKIAA1022	SH3 and multiple ankyrin repeat domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-156034914-4	chr4	156034446	156035446	+	606.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029264, exon 15 of 15)	exon (NM_029264, exon 15 of 15)	8624.0	NM_021985	21936.0	Mm.3180	NM_009400	ENSMUSG00000041954	Tnfrsf18	AITR|Gitr	tumor necrosis factor receptor superfamily, member 18	protein-coding	0.0	0.5	2.5	0.0	0.5	1.0
Merged-chr17-70984800-2	chr17	70984300	70985300	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023402, intron 1 of 3)	B4|SINE|B4	5716.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49602334-2	chr7	49601834	49602834	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 36 of 37)	intron (NM_175272, intron 36 of 37)	34501.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70323479-1	chr9	70322979	70323979	+	606.5	f0_balb.idr	intron (NM_181072, intron 7 of 27)	intron (NM_181072, intron 7 of 27)	82274.0	NR_049200	100885839.0		NR_049200	ENSMUSG00000093763	Mir5626	Gm25590|mir-5626|mmu-mir-5626	microRNA 5626	ncRNA	0.0	2.0	1.0	0.0	0.0	1.5
Merged-chr1-75172239-2	chr1	75171739	75172739	+	606.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001159906)	TTS (NM_001159906)	3504.0	NM_026846	68818.0	Mm.32646	NM_026846	ENSMUSG00000026197	Zfand2b	1110060O18Rik|C81256	zinc finger, AN1 type domain 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129624781-2	chr2	129624281	129625281	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355158, intron 7 of 8)	intron (NM_001355158, intron 7 of 8)	29319.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	2.5	5.5	6.5	1.0	12.0	2.5
Merged-chr19-3582670-2	chr19	3582170	3583170	+	606.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MuRRS-int|LTR|ERV1	-6921.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.5	1.5
Merged-chr2-165364433-2	chr2	165363933	165364933	+	606.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2314.0	NM_001005425	381405.0	Mm.296323	NM_001005425	ENSMUSG00000056824	Zfp663	Gm1008	zinc finger protein 663	protein-coding	1.0	4.0	0.5	6.0	3.5	0.0
Merged-chr1-87192616-2	chr1	87192116	87193116	+	606.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_021600, exon 5 of 12)	exon (NM_021600, exon 5 of 12)	2019.0	NM_021600	11447.0	Mm.2811	NM_021600	ENSMUSG00000026251	Chrnd	Achr-4|Acrd|L10076	cholinergic receptor, nicotinic, delta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-76930863-2	chr18	76930334	76931334	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025409, intron 1 of 2)	intron (NM_025409, intron 1 of 2)	807.0	NM_025409	66191.0	Mm.28593	NM_025409	ENSMUSG00000090000	Ier3ip1	1110057H19Rik|AI644142|AL022842|AL022863|AV026606	immediate early response 3 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25570234-2	chr17	25569734	25570734	+	606.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045176)	promoter-TSS (NR_045176)	452.0	NM_011447	20681.0	Mm.258220	NM_011447	ENSMUSG00000024176	Sox8	-	SRY (sex determining region Y)-box 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-26444008-1	chr4	26443508	26444508	+	606.5	f0_balb.idr	Intergenic	RMER4B|LTR|ERVK	-97356.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	2.0	14.5	4.0	0.5	6.0	3.0
Merged-chr3-122987109-2	chr3	122986609	122987609	+	606.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2662.0	NM_133857	99526.0	Mm.491248	NM_133857	ENSMUSG00000039701	Usp53	AA939927|Phxr3|Sp6|mKIAA1350|mbo	ubiquitin specific peptidase 53	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5105596-2	chr11	5105128	5106128	+	606.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_152138)	TTS (NR_152138)	5463.0	NM_001290493	279766.0	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	0.0	4.5	3.0	0.0	2.0	0.0
Merged-chr2-158612117-2	chr2	158611617	158612617	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009508, intron 1 of 1)	intron (NM_009508, intron 1 of 1)	1359.0	NM_009508	22348.0	Mm.143404	NM_009508	ENSMUSG00000037771	Slc32a1	R75019|VGAT|Viaat	solute carrier family 32 (GABA vesicular transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-48645822-2	chr6	48645334	48646334	+	606.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-1400.0	NM_001077410	243374.0	Mm.86514	NM_212486	ENSMUSG00000064262	Gimap8	Gm457|IAN9|IMAP8	GTPase, IMAP family member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112928575-2	chr12	112928075	112929075	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010588, intron 2 of 25)	CpG	920.0	NM_010588	16450.0	Mm.186146	NM_010588	ENSMUSG00000002799	Jag2	D12Ggc2e|Serh|mJagged2-1|sm	jagged 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97409746-2	chr11	97409246	97410246	+	606.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-40414.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-90740095-2	chr10	90739595	90740595	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181398, intron 3 of 9)	RLTR30D_MM|LTR|ERV1	-89559.0	NM_001347054	77531.0	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1|AIDA-1b|C030032C09Rik|E530015N03Rik|EB-1|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.0	2.5	0.0	0.0	0.0	0.0
Merged-chr14-70199288-2	chr14	70198788	70199788	+	606.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001271408, exon 5 of 21)	exon (NM_001271408, exon 5 of 21)	5335.0	NM_001271408	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115687079-2	chr11	115686579	115687579	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	L1M4|LINE|L1	12455.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96781449-2	chr11	96780949	96781949	+	606.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-3894.0	NM_001163389	74479.0	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr3-88423033-2	chr3	88422533	88423533	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281795, intron 1 of 3)	ID_B1|SINE|B4	2108.0	NM_178696	229517.0	Mm.301740	NM_178696	ENSMUSG00000050144	Slc25a44	6720482A19|B430110G05Rik	solute carrier family 25, member 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-77887877-2	chr16	77887377	77888377	+	606.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	241604.0	NR_029540	723952.0		NR_029540	ENSMUSG00000065472	Mir125b-2	Mirn125b-2|mir-125b-2	microRNA 125b-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51170735-2	chr13	51170235	51171235	+	606.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029173)	promoter-TSS (NM_029173)	-290.0	NM_029173	75124.0	Mm.179243	NM_029173	ENSMUSG00000021396	Nxnl2	4930519N16Rik|Rdcvf2	nucleoredoxin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32383898-2	chr2	32383398	32384398	+	606.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008491)	TTS (NM_008491)	-1983.0	NM_198001	73737.0	Mm.27608	NM_198001	ENSMUSG00000039195	1110008P14Rik	C79326	RIKEN cDNA 1110008P14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141554477-2	chr7	141553977	141554977	+	606.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-7703.0	NM_001357068	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138088652-2	chr1	138088152	138089152	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 15 of 28)	intron (NM_001268286, intron 15 of 28)	86474.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-64971664-2	chr16	64971164	64972164	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008310, intron 2 of 2)	MTD|LTR|ERVL-MaLR	119663.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-76668297-2	chr5	76667797	76668797	+	606.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76583.0	NM_199032	381644.0	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152950885-2	chr2	152950385	152951385	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159376, intron 1 of 6)	intron (NM_001159376, intron 1 of 6)	520.0	NM_145744	252864.0	Mm.330671	NM_145744	ENSMUSG00000042662	Dusp15	AI851682|LMW-DSP10|T-DSP10	dual specificity phosphatase-like 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135694488-2	chr7	135693988	135694988	+	606.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081117, exon 12 of 14)	exon (NM_001081117, exon 12 of 14)	21891.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81813428-2	chr15	81812928	81813928	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_017376, intron 1 of 3)	intron (NM_017376, intron 1 of 3)	2014.0	NM_017376	21685.0	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	1.0	1.0	0.0	0.5	0.0	2.0
Merged-chr10-81195434-2	chr10	81194934	81195934	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_015477, intron 1 of 2)	intron (NR_015477, intron 1 of 2)	743.0	NR_015477	69678.0	Mm.81562	NR_015477		Atcayos	2310050B05Rik	ataxia, cerebellar, Cayman type, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142717569-2	chr5	142717069	142718069	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146257, intron 6 of 10)	intron (NM_146257, intron 6 of 10)	15468.0	NM_146257	243328.0	Mm.125942	NM_146257	ENSMUSG00000050822	Slc29a4	ENT4|mPMAT	solute carrier family 29 (nucleoside transporters), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80095577-2	chr10	80095077	80096077	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359637, intron 1 of 3)	intron (NM_001359637, intron 1 of 3)	5610.0	NM_001359635	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-115449274-2	chr2	115448774	115449774	+	606.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62927.0	NR_030712	100043232.0	Mm.240112	NR_030712	ENSMUSG00000085582	3110099E03Rik	-	RIKEN cDNA 3110099E03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76209286-2	chr15	76208786	76209786	+	606.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201386)	promoter-TSS (NM_201386)	-121.0	NM_201386	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167679513-2	chr2	167679013	167680013	+	606.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-9402.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85245203-2	chr12	85244703	85245703	+	606.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105903)	TTS (NR_105903)	782.0	NR_105903	102466769.0		NR_105903	ENSMUSG00000098263	Mir6938	Gm27519|mmu-mir-6938	microRNA 6938	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98817704-2	chr11	98817204	98818204	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138660, intron 3 of 13)	intron (NM_138660, intron 3 of 13)	-7615.0	NR_033551	100037262.0	Mm.442062	NR_033551	ENSMUSG00000075576	Gm12359	-	predicted gene 12359	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-71014562-2	chr12	71014062	71015062	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045056, intron 1 of 2)	intron (NR_045056, intron 1 of 2)	1261.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94692966-2	chr16	94692466	94693466	+	606.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347731, exon 11 of 11)	3' UTR (NM_001347731, exon 11 of 11)	81547.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-15004709-2	chr5	15004209	15005209	+	606.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-25810.0	NM_001281514	100503549.0	Mm.491086	NM_001281514	ENSMUSG00000072188	Gm10354	-	predicted gene 10354	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78350068-2	chr17	78349568	78350568	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 11 of 16)	intron (NM_015800, intron 11 of 16)	68084.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152618545-2	chr1	152618045	152619045	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	B3|SINE|B2	6672.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108699062-2	chr12	108698562	108699562	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027299, intron 1 of 2)	intron (NM_027299, intron 1 of 2)	3244.0	NM_001171002	70059.0	Mm.207605	NM_027299	ENSMUSG00000021263	Degs2	2210008A03Rik|AI852933|DES2	delta(4)-desaturase, sphingolipid 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-8873958-2	chr13	8873458	8874458	+	606.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2222.0	NM_001039388	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27353371-2	chr2	27352871	27353871	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	74237.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55091339-2	chr19	55090839	55091839	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008149, intron 4 of 20)	intron (NM_008149, intron 4 of 20)	8138.0	NM_008149	14732.0	Mm.210196	NM_008149	ENSMUSG00000024978	Gpam	GPAT|GPAT-1|GPAT1|P90	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-72939459-2	chr10	72938959	72939959	+	606.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	147246.0	NR_040646	327768.0	Mm.417745	NR_040646	ENSMUSG00000111994	A330049N07Rik	-	RIKEN cDNA A330049N07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34559632-2	chr5	34559132	34560132	+	606.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001145858, exon 8 of 13)	exon (NM_001145858, exon 8 of 13)	10056.0	NM_001145859	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118772331-1	chr2	118771831	118772831	+	606.5	f0_c57.idr	promoter-TSS (NM_001145644)	promoter-TSS (NM_001145644)	-438.0	NM_001145644	53906.0	Mm.36777	NM_025308	ENSMUSG00000046804	Phgr1	1810007E14Rik|AA238765	proline/histidine/glycine-rich 1	protein-coding	0.0	10.5	2.0	3.5	10.0	2.5
Merged-chr1-132067938-3	chr1	132067473	132068473	+	606.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172510)	promoter-TSS (NM_172510)	89.0	NM_172510	213006.0	Mm.208445	NM_172510	ENSMUSG00000059149	Mfsd4a	A230072B04|A930031D07Rik|AI850289|Mfsd4	major facilitator superfamily domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-10595346-2	chr5	10594846	10595846	+	606.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-269683.0	NR_003596	623849.0	Mm.335888	NR_003596	ENSMUSG00000091422	Gm6455	EG623849	predicted gene 6455	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-9726443-2	chr6	9725943	9726943	+	606.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTG)n|Simple_repeat|Simple_repeat	776424.0	NM_008751	18231.0	Mm.46954	NM_008751	ENSMUSG00000046178	Nxph1	C130005L03Rik	neurexophilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-116141415-3	chr12	116140916	116141916	+	606.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009511, intron 10 of 12)	MTC|LTR|ERVL-MaLR	63690.0	NM_009511	22355.0	Mm.395245	NM_009511	ENSMUSG00000011171	Vipr2	VPAC2|VPAC2R|Vip2	vasoactive intestinal peptide receptor 2	protein-coding	0.0	1.5	0.0	0.0	0.5	0.0
Merged-chr9-52229844-3	chr9	52229346	52230346	+	606.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61735.0	NM_001162921	244871.0	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108753784-3	chr6	108753326	108754326	+	606.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-29233.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	0.0	7.0	7.0	0.0	0.0	5.5
Merged-chr5-8356516-3	chr5	8356019	8357019	+	606.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	11641.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-39175080-1	chr3	39174580	39175580	+	606.25	f0_c57.idr	Intergenic	Intergenic	288140.0	NM_183221	329628.0	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80582990-2	chr10	80582490	80583490	+	606.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145421)	TTS (NM_145421)	-5694.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-127239062-2	chr6	127238562	127239562	+	606.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	68905.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141531189-2	chr7	141530689	141531689	+	606.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026522, intron 2 of 10)	MTC|LTR|ERVL-MaLR	8668.0	NM_026522	68038.0	Mm.245355	NM_026522	ENSMUSG00000025512	Chid1	3110023E09Rik|AI841869	chitinase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153215613-1	chr2	153215113	153216113	+	606.0	f0_balb.idr	Intergenic	Intergenic	9828.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	0.5	4.5	1.5	0.5	4.5	4.5
Merged-chr19-43526301-1	chr19	43525801	43526801	+	606.0	f1_c57bl6.idr	Intergenic	Intergenic	-1696.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	2.0	4.5	1.0	0.0	5.0	2.0
Merged-chr5-113831628-1	chr5	113831128	113832128	+	606.0	f1_c57bl6.idr	Intergenic	Intergenic	-1127.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0.0	0.0	1.0	2.5	0.0	1.0
Merged-chr8-13593081-1	chr8	13592581	13593581	+	606.0	f1_c57bl6.idr	intron (NM_009025, intron 7 of 23)	intron (NM_009025, intron 7 of 23)	-30620.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr4-17323751-2	chr4	17323251	17324251	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-529142.0	NR_135158	17389.0	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT-MMP 3|MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr4-128841245-2	chr4	128840745	128841745	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35133.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-14614445-2	chr3	14613945	14614945	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR33|LTR|ERVK	-3189.0	NM_001099674	69126.0	Mm.389020	NM_001099674	ENSMUSG00000078784	1810022K09Rik	AI746582|AL023036	RIKEN cDNA 1810022K09 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-33467268-1	chr4	33466768	33467768	+	606.0	f0_balb.idr	intron (NM_001305273, intron 14 of 15)	intron (NM_001305273, intron 14 of 15)	29187.0	NR_106198	102465904.0		NR_106198	ENSMUSG00000098310	Mir8118	Gm27954|mmu-mir-8118	microRNA 8118	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-88970642-1	chr11	88970142	88971142	+	606.0	f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1996.0	NR_003492	72381.0	Mm.288885	NR_003492	ENSMUSG00000081766	2210409E12Rik	AU021711|C76890	transcription elongation factor B (SIII), polypeptide 2 pseudogene	pseudo	11.0	15.0	8.0	0.0	0.0	1.0
Merged-chr12-85597456-2	chr12	85596956	85597956	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1649.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78753174-1	chr15	78752674	78753674	+	606.0	f1_c57bl6.idr	Intergenic	Intergenic	20271.0	NM_008595	17305.0	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	6.0	0.5	3.5	3.0	21.0	12.5
Merged-chr6-115647547-1	chr6	115647047	115648047	+	606.0	f0_balb.idr	intron (NM_029780, intron 1 of 16)	intron (NM_029780, intron 1 of 16)	28341.0	NM_001356334	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19198920-2	chr3	19198420	19199420	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356295, intron 1 of 7)	intron (NM_001356295, intron 1 of 7)	10625.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	0.0	0.0	3.0	0.5	3.0	2.0
Merged-chr9-45677689-1	chr9	45677189	45678189	+	606.0	f0_c57.idr	intron (NM_001081270, intron 8 of 32)	intron (NM_001081270, intron 8 of 32)	150949.0	NM_001081373	214552.0	Mm.260103	NM_172531	ENSMUSG00000043987	Cep164	AI450905|BC027092|D030051D21|mKIAA1052	centrosomal protein 164	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46136023-2	chr4	46135523	46136523	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173033, intron 1 of 9)	intron (NM_173033, intron 1 of 9)	2452.0	NM_173033	272027.0	Mm.249594	NM_173033	ENSMUSG00000035495	Tstd2	3010020C06	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	protein-coding	0.0	2.5	7.0	4.0	11.5	0.5
Merged-chr2-143963139-2	chr2	143962639	143963639	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024281, intron 9 of 23)	intron (NM_024281, intron 9 of 23)	47808.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58961782-1	chr11	58961282	58962282	+	606.0	f1_balb.idr	promoter-TSS (NM_001318003)	promoter-TSS (NM_001318003)	71.0	NM_001318003	382523.0		NM_001318003		Gm12260	H3t	predicted gene 12260	protein-coding	0.5	0.0	2.0	4.0	0.5	0.5
Merged-chr11-120563804-1	chr11	120563304	120564304	+	606.0	f1_balb.idr	intron (NM_011032, intron 5 of 10)	intron (NM_011032, intron 5 of 10)	9449.0	NM_011032	18453.0	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	2.0	3.0	1.5	7.0	3.0	3.0
Merged-chr2-34742850-1	chr2	34742350	34743350	+	606.0	f0_c57.idr	intron (NR_151469, intron 2 of 26)	RSINE1|SINE|B4	12382.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59795285-2	chr10	59794785	59795785	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359267, intron 8 of 11)	RLTR23|LTR|ERV1	-84306.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120616125-2	chr5	120615625	120616625	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028041, intron 1 of 19)	B3|SINE|B2	2995.0	NM_028041	71990.0	Mm.24495	NM_028041	ENSMUSG00000029599	Ddx54	2410015A15Rik|AI414901|DP97	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86496730-2	chr6	86496230	86497230	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-8503.0	NR_040292	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102142350-1	chr5	102141850	102142850	+	606.0	f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-72429.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	4.5	2.5	1.5	0.0	0.0
Merged-chr18-77784595-1	chr18	77784095	77785095	+	606.0	f0_balb.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-9955.0	NM_013831	19201.0	Mm.57174	NM_013831	ENSMUSG00000025429	Pstpip2	MAYP|cmo	proline-serine-threonine phosphatase-interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54158549-1	chr6	54158049	54159049	+	606.0	f1_balb.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	-106309.0	NM_001311133	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0.0	20.5	3.5	0.0	8.0	1.0
Merged-chr2-131197056-2	chr2	131196556	131197556	+	606.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_023117, exon 15 of 16)	exon (NM_023117, exon 15 of 16)	10108.0	NM_001111075	12531.0	Mm.38444	NM_023117	ENSMUSG00000027330	Cdc25b	AI604853	cell division cycle 25B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-86826239-2	chr10	86825739	86826739	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175331, intron 12 of 13)	intron (NM_175331, intron 12 of 13)	47234.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-71092383-1	chr9	71091883	71092883	+	606.0	f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	70250.0	NM_001271843	64008.0	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	13.0	0.5	0.0	0.0	5.0	0.5
Merged-chr8-126677568-2	chr8	126677051	126678051	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84115.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	2.5	0.0	0.0	0.0	2.0	0.0
Merged-chr9-63021948-2	chr9	63021448	63022448	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41069.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46299981-2	chr19	46299481	46300481	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-4756.0	NM_001177369	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-38231237-2	chr5	38230737	38231737	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025281, intron 6 of 8)	intron (NM_025281, intron 6 of 8)	10755.0	NM_025281	17089.0	Mm.28560	NM_025281	ENSMUSG00000067367	Lyar	MLZ-264	Ly1 antibody reactive clone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-104131610-1	chr12	104131110	104132110	+	606.0	f0_balb.idr	intron (NM_173024, intron 2 of 4)	intron (NM_173024, intron 2 of 4)	3614.0	NM_173024	271047.0	Mm.120265	NM_173024	ENSMUSG00000066364	Serpina3b	6A1|A030003A19Rik	serine (or cysteine) peptidase inhibitor, clade A, member 3B	protein-coding	4.0	8.5	10.0	14.5	19.5	12.5
Merged-chr11-51816534-2	chr11	51816034	51817034	+	606.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_199299, exon 12 of 12)	3' UTR (NM_199299, exon 12 of 12)	40947.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-85586646-2	chr9	85586146	85587146	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	162688.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	21.5	1.5	7.0	5.0	6.5	6.0
Merged-chr12-112712411-2	chr12	112711911	112712911	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9763.0	NM_001024602	217882.0	Mm.23689	NM_001024602	ENSMUSG00000072825	Cep170b	AI466840|AW555464|Kiaa0284|mKIAA0284	centrosomal protein 170B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-38026468-1	chr19	38025968	38026968	+	606.0	f1_c57bl6.idr	intron (NM_001302140, intron 1 of 53)	intron (NM_001302140, intron 1 of 53)	17109.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	27.0	30.5	46.0	33.5	36.0	45.5
Merged-chr3-89795751-3	chr3	89795256	89796256	+	606.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22147.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	23.5	58.5	48.5	13.5	35.0	32.0
Merged-chr7-128320059-2	chr7	128319559	128320559	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21928.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54820200-2	chr12	54819700	54820700	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-24538.0	NM_026998	72183.0	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-93305740-1	chr13	93305240	93306240	+	606.0	f1_balb.idr	intron (NM_147176, intron 1 of 9)	intron (NM_147176, intron 1 of 9)	1983.0	NM_011982	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	0.5	3.0	0.0	0.0	1.5	4.5
Merged-chr2-4607491-2	chr2	4606991	4607991	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 11 of 11)	intron (NM_001177844, intron 11 of 11)	44644.0	NM_026045	67229.0	Mm.38529	NM_026045	ENSMUSG00000039449	Prpf18	2810441A10Rik	pre-mRNA processing factor 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-96411051-1	chr7	96410551	96411551	+	606.0	f0_balb.idr	intron (NM_011858, intron 2 of 32)	LTR85c|LTR|Gypsy?	-69087.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	0.0	0.0	2.5	3.0	0.0	4.0
Merged-chr5-117481193-1	chr5	117480693	117481693	+	606.0	f1_balb.idr	intron (NM_001312914, intron 1 of 19)	ID_B1|SINE|B4	67191.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0.0	0.0	0.0	0.0	2.5	0.0
Merged-chr16-35862271-2	chr16	35861771	35862771	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039530, intron 4 of 16)	B3|SINE|B2	9111.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95941901-2	chr15	95941401	95942401	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 11 of 19)	intron (NM_175344, intron 11 of 19)	-111829.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88111597-2	chr17	88111097	88112097	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-13915.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0.0	3.5	0.0	1.5	0.0	1.5
Merged-chr1-50962775-1	chr1	50962275	50963275	+	606.0	f0_balb.idr	intron (NM_019790, intron 4 of 9)	intron (NM_019790, intron 4 of 9)	35252.0	NM_019790	56363.0	Mm.245154	NM_019790	ENSMUSG00000026109	Tmeff2	4832418D20Rik|7630402F16Rik|TR-2	transmembrane protein with EGF-like and two follistatin-like domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-77848112-2	chr16	77847612	77848612	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	201839.0	NR_029540	723952.0		NR_029540	ENSMUSG00000065472	Mir125b-2	Mirn125b-2|mir-125b-2	microRNA 125b-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54477008-2	chr18	54476508	54477508	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54713.0	NR_040338	77433.0	Mm.159919	NR_040338		Redrum	9430076G02Rik	Redrum, erythroid developmental long intergenic non-protein coding transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39639378-2	chr18	39638878	39639878	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-134119.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54766427-1	chr14	54765927	54766927	+	606.0	f0_balb.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	15459.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	5.5	10.5	12.0	28.5	28.5	28.5
Merged-chr17-50149315-1	chr17	50148815	50149815	+	606.0	f1_balb.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	41182.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.5	6.0	0.5	9.0	0.0	0.0
Merged-chr19-47155238-1	chr19	47154738	47155738	+	606.0	f1_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	-11064.0	NM_001081271	546729.0	Mm.439624	NM_001081271	ENSMUSG00000079258	Calhm1	EG546729	calcium homeostasis modulator 1	protein-coding	0.5	3.0	5.0	0.0	1.0	0.0
Merged-chr16-38242994-2	chr16	38242494	38243494	+	606.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019827, exon 11 of 11)	3' UTR (NM_019827, exon 11 of 11)	51830.0	NM_010936	18171.0	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding	0.0	0.0	3.0	0.0	0.0	3.0
Merged-chr1-74772087-2	chr1	74771587	74772587	+	606.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009526, exon 1 of 4)	5' UTR (NM_009526, exon 1 of 4)	195.0	NM_009526	22420.0	Mm.268282	NM_009526	ENSMUSG00000033227	Wnt6	AA409270|Wnt-6	wingless-type MMTV integration site family, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70655864-1	chr8	70655364	70656364	+	606.0	f1_c57bl6.idr	intron (NM_023217, intron 2 of 4)	intron (NM_023217, intron 2 of 4)	3874.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	0.0	2.5	4.5	1.0	0.0	2.0
Merged-chr18-37808603-2	chr18	37808103	37809103	+	606.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_033581, exon 1 of 4)	exon (NM_033581, exon 1 of 4)	2193.0	NM_033581	93706.0	Mm.247203	NM_033581	ENSMUSG00000102918	Pcdhgc3	PC43|Pcdh2	protocadherin gamma subfamily C, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85595275-2	chr12	85594775	85595775	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-3830.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65585364-2	chr9	65584864	65585864	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1796.0	NR_151702	208084.0	Mm.211032	NM_172453	ENSMUSG00000041064	Pif1	4631410M14|AI449441	PIF1 5'-to-3' DNA helicase	protein-coding	0.0	0.0	4.5	0.0	2.5	2.0
Merged-chr3-38565570-2	chr3	38565070	38566070	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-80754.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24415700-2	chr13	24415200	24416200	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007717, intron 1 of 15)	intron (NM_007717, intron 1 of 15)	578.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-52180676-2	chr18	52180176	52181176	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-57130.0	NR_029788	723830.0		NR_029788	ENSMUSG00000065494	Mir28a	Mir28|Mirn28|mmu-mir-28|mmu-mir-28a	microRNA 28a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57883357-2	chr16	57882857	57883857	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-128620.0	NM_007739	12837.0	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-47415637-2	chr2	47415137	47416137	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-1398472.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101663997-2	chr11	101663497	101664497	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-1544.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36997287-1	chr17	36996787	36997787	+	606.0	f0_balb.idr	Intergenic	Intergenic	-3876.0	NM_001168502	22715.0	Mm.305561	NM_009559	ENSMUSG00000036036	Zfp57	G19|Zfp-57	zinc finger protein 57	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87424680-2	chr11	87424180	87425180	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031386, intron 1 of 30)	B1_Mus1|SINE|Alu	-2911.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124359525-1	chr6	124359025	124360025	+	606.0	f0_balb.idr	Intergenic	L1M4|LINE|L1	-2439.0	NM_001177502	76921.0	Mm.425335	NM_001177502	ENSMUSG00000079346	1700013D24Rik	-	RIKEN cDNA 1700013D24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27944090-2	chr15	27943590	27944590	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	81758.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115628841-2	chr11	115628341	115629341	+	606.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026071)	promoter-TSS (NM_026071)	-546.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96637181-2	chr10	96636681	96637681	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20180.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-61141807-1	chr1	61141307	61142307	+	606.0	f1_balb.idr	Intergenic	Intergenic	163893.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	0.0	6.0	1.0	5.5	3.5	0.0
Merged-chr9-5335138-2	chr9	5334638	5335638	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007609, intron 7 of 8)	ORR1A4|LTR|ERVL-MaLR	-10338.0	NM_009808	12364.0	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-48875316-2	chr13	48874816	48875816	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4431.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133215022-1	chr4	133214522	133215522	+	606.0	f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-2486.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	0.0	8.5	2.0	1.5	0.0	9.0
Merged-chr3-95876827-2	chr3	95876330	95877330	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040446, intron 1 of 3)	B1_Mus2|SINE|Alu	5308.0	NR_040446	100042889.0	Mm.440109	NR_040446	ENSMUSG00000080727	C920021L13Rik	-	RIKEN cDNA C920021L13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134961838-1	chr1	134961338	134962338	+	606.0	f0_balb.idr	promoter-TSS (NM_001278115)	promoter-TSS (NM_001278115)	-727.0	NM_026024	67196.0	Mm.284587	NM_026024	ENSMUSG00000026429	Ube2t	2700084L22Rik|C80607	ubiquitin-conjugating enzyme E2T	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-89007711-1	chr11	89007211	89008211	+	606.0	f1_c57bl6.idr	intron (NM_009546, intron 2 of 8)	intron (NM_009546, intron 2 of 8)	8308.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	4.0	7.0	13.5	7.0	15.5	8.0
Merged-chr14-21136417-2	chr14	21135917	21136917	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134079, intron 3 of 10)	B4A|SINE|B4	60265.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	0.0	0.0	4.0	1.0	0.5	0.0
Merged-chr5-65488955-2	chr5	65488459	65489459	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133697, intron 1 of 4)	intron (NM_133697, intron 1 of 4)	3876.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39485488-2	chr18	39484988	39485988	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	1757.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	3.0	2.0	3.0	2.0	4.5
Merged-chr16-4914297-1	chr16	4913797	4914797	+	606.0	f0_balb.idr	intron (NM_001357062, intron 5 of 17)	intron (NM_001357062, intron 5 of 17)	-24814.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-67032762-2	chr14	67032262	67033262	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360034, intron 2 of 8)	RSINE1|SINE|B4	-23885.0	NM_009761	12177.0	Mm.29820	NM_009761	ENSMUSG00000022051	Bnip3l	C86132|D14Ertd719e|Nip3L|Nix	BCL2/adenovirus E1B interacting protein 3-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106416625-2	chr11	106416125	106417125	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 10 of 21)	intron (NM_023913, intron 10 of 21)	-33844.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126800654-2	chr8	126800154	126801154	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48366.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-146214916-1	chr2	146214416	146215416	+	606.0	f1_balb.idr	Intergenic	Intergenic	-7081.0	NM_016889	53626.0	Mm.379070	NM_016889	ENSMUSG00000068154	Insm1	IA-1	insulinoma-associated 1	protein-coding	0.0	0.0	2.5	0.0	1.0	3.5
Merged-chr2-174471449-2	chr2	174470949	174471949	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025531, intron 1 of 5)	intron (NM_025531, intron 1 of 5)	1492.0	NM_025531	66390.0	Mm.182294	NM_025531	ENSMUSG00000016257	Prelid3b	2310042G06Rik|AA407013|Slmo2	PRELI domain containing 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30557208-1	chr14	30556708	30557708	+	606.0	f1_c57bl6.idr	intron (NM_009388, intron 1 of 13)	intron (NM_009388, intron 1 of 13)	8077.0	NM_009388	21881.0	Mm.290692	NM_009388	ENSMUSG00000021957	Tkt	p68	transketolase	protein-coding	1.0	19.0	6.0	7.5	9.0	9.0
Merged-chr19-25607446-1	chr19	25606946	25607946	+	606.0	f0_balb.idr	Intergenic	Intergenic	-3091.0	NM_177360	240590.0	Mm.62785	NM_177360	ENSMUSG00000042372	Dmrt3	-	doublesex and mab-3 related transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-14206853-2	chr10	14206353	14207353	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	240474.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113132871-2	chr12	113132371	113133371	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346696, intron 16 of 19)	intron (NM_001346696, intron 16 of 19)	-7365.0	NM_024223	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78577111-2	chr10	78576611	78577611	+	606.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_173751, exon 5 of 16)	exon (NM_173751, exon 5 of 16)	2120.0	NM_001359303	216136.0	Mm.2644	NM_173751	ENSMUSG00000032763	Ilvbl	5830463I21|AI415009	ilvB (bacterial acetolactate synthase)-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60930565-2	chr11	60930065	60931065	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027800, intron 1 of 1)	intron (NR_027800, intron 1 of 1)	1302.0	NR_027800	24082.0	Mm.46270	NM_025293	ENSMUSG00000042549	Map2k3os	F3-1|Gm16516|Gtlf3a	mitogen-activated protein kinase kinase 3, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88702453-1	chr4	88701953	88702953	+	606.0	f0_balb.idr	Intergenic	Intergenic	-11185.0	NM_008336	15974.0	Mm.377093	NM_008336	ENSMUSG00000100079	Ifnab	-	interferon alpha B	protein-coding	3.5	20.5	15.0	9.0	14.5	12.5
Merged-chr2-53192733-2	chr2	53192233	53193233	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022989, intron 1 of 3)	intron (NM_022989, intron 1 of 3)	649.0	NM_022989	65103.0	Mm.37623	NM_022989	ENSMUSG00000026960	Arl6ip6	2310057C01Rik|2610529A11Rik|Aip-6	ADP-ribosylation factor-like 6 interacting protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45559729-2	chr19	45559229	45560229	+	606.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356947)	promoter-TSS (NM_001356947)	835.0	NM_001330506	56626.0	Mm.46509	NM_020032	ENSMUSG00000025218	Poll	1110003P06Rik|AV007317	polymerase (DNA directed), lambda	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135688578-2	chr3	135688078	135689078	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 1 of 24)	intron (NM_008689, intron 1 of 24)	2969.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16552241-2	chr1	16551741	16552741	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271016, intron 5 of 6)	intron (NM_001271016, intron 5 of 6)	-32939.0	NM_001347045	29819.0	Mm.216257	NM_025303	ENSMUSG00000025920	Stau2	-	staufen double-stranded RNA binding protein 2	protein-coding	1.0	0.0	0.0	1.0	0.0	0.0
Merged-chr1-60979602-1	chr1	60979102	60980102	+	606.0	f0_balb.idr	intron (NM_017480, intron 1 of 4)	L2b|LINE|L2	1688.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	4.0	8.0	3.0	1.5	12.0	7.5
Merged-chr6-127970436-1	chr6	127969936	127970936	+	606.0	f1_c57bl6.idr	intron (NM_001356301, intron 2 of 7)	intron (NM_001356301, intron 2 of 7)	82814.0	NM_026743	68498.0	Mm.174368	NM_026743	ENSMUSG00000030351	Tspan11	1110014F12Rik|AU067806	tetraspanin 11	protein-coding	0.0	0.0	5.0	9.0	0.0	4.5
Merged-chr11-69604057-3	chr11	69603587	69604587	+	605.916687	f1_balb.idr|f1_c57bl6.idr	intron (NM_013415, intron 1 of 6)	intron (NM_013415, intron 1 of 6)	1873.0	NM_013415	11932.0	Mm.235204	NM_013415	ENSMUSG00000041329	Atp1b2	Amog|Atpb-2	ATPase, Na+/K+ transporting, beta 2 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45180900-2	chr9	45180352	45181352	+	605.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145403, intron 5 of 12)	intron (NM_145403, intron 5 of 12)	-14914.0	NM_001198971	408059.0	Mm.249297	NM_001198971	ENSMUSG00000091996	BC049352	SMIM35	cDNA sequence BC049352	protein-coding	7.0	10.5	13.0	5.5	26.0	20.0
Merged-chr9-123845328-2	chr9	123844828	123845828	+	605.849976	f1_balb.idr|f1_c57bl6.idr	intron (NM_148925, intron 1 of 18)	intron (NM_148925, intron 1 of 18)	6333.0	NM_148925	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-81574961-2	chr17	81574461	81575461	+	605.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	163426.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-116031346-3	chr5	116030837	116031837	+	605.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6909.0	NM_031869	19079.0	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	3.5	0.0	0.5	2.5	0.0	2.5
Merged-chr5-88586431-2	chr5	88585931	88586931	+	605.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 2 of 13)	intron (NM_001359208, intron 2 of 13)	2918.0	NM_001359209	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0.5	2.0	3.5	0.0	3.0	1.5
Merged-chr15-98808462-2	chr15	98807962	98808962	+	605.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013741)	promoter-TSS (NM_001013741)	-537.0	NM_001013741	13199.0	Mm.390810	NM_001013741	ENSMUSG00000059213	Ddn	Gm748	dendrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-88959152-3	chr9	88958646	88959646	+	605.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009742, intron 1 of 1)	intron (NM_009742, intron 1 of 1)	2226.0	NM_009742	12044.0	Mm.425593	NM_009742	ENSMUSG00000102037	Bcl2a1a	A1|BB218357|Bcl2a1|Bfl-1|Hbpa1	B cell leukemia/lymphoma 2 related protein A1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42100486-1	chr19	42099986	42100986	+	605.666687	f1_balb.idr	intron (NM_145501, intron 1 of 8)	intron (NM_145501, intron 1 of 8)	10051.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	1.5	32.5	12.5	35.5	41.0	31.0
Merged-chr1-135639973-1	chr1	135639473	135640473	+	605.666687	f0_balb.idr	Intergenic	L1MB7|LINE|L1	42197.0	NR_151586	215714.0	Mm.472859	NM_175447		Gm4793	EG215714	predicted gene 4793	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-103306912-2	chr12	103306412	103307412	+	605.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7857.0	NR_136894	102632488.0	Mm.109435	NR_136894	ENSMUSG00000100789	Gm29508	-	predicted gene 29508	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-14932093-2	chr9	14931593	14932593	+	605.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28142.0	NM_022888	64931.0	Mm.86738	NM_022888	ENSMUSG00000031933	Izumo1r	0910001L11Rik|C86255|Folbp3|Folr4|Juno	IZUMO1 receptor, JUNO	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65313081-2	chr9	65312581	65313581	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011802, intron 6 of 13)	intron (NM_011802, intron 6 of 13)	18821.0	NM_001044389	270166.0	Mm.30088	NM_011802	ENSMUSG00000015357	Clpx	AU014732|E330029I21	caseinolytic mitochondrial matrix peptidase chaperone subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32520933-1	chr9	32520433	32521433	+	605.5	f0_balb.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	20519.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102371711-2	chr12	102371211	102372211	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 6 of 9)	intron (NM_177620, intron 6 of 9)	68102.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-5573512-2	chr9	5573012	5574012	+	605.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	228036.0	NM_009808	12364.0	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119923256-2	chr11	119922756	119923756	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 2)	RSINE1|SINE|B4	9446.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101752650-2	chr13	101752150	101753150	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	15567.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-60757603-2	chr17	60757103	60758103	+	605.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B2|LTR|ERVL	-1744281.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-27142978-2	chr6	27142478	27143478	+	605.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	793772.0	NR_030420	735266.0		NR_030420	ENSMUSG00000076067	Mir592	Mirn592|mir-592|mmu-mir-592	microRNA 592	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75892946-2	chr7	75892446	75893446	+	605.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	44608.0	NM_029652	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-10439126-2	chr14	10438626	10439626	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 4 of 9)	intron (NM_001360141, intron 4 of 9)	14332.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163968821-2	chr2	163968322	163969322	+	605.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26375.0	NM_018753	54401.0	Mm.34319	NM_018753	ENSMUSG00000018326	Ywhab	1300003C17Rik|14-3-3b	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	protein-coding	2.0	0.0	1.0	2.0	0.0	3.0
Merged-chr13-98869118-2	chr13	98868618	98869618	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 7 of 23)	intron (NM_178716, intron 7 of 23)	21924.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	3.0	7.0	4.0	2.5	18.0	6.0
Merged-chr6-125152574-2	chr6	125152074	125153074	+	605.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_126495, exon 5 of 9)	non-coding (NR_126495, exon 5 of 9)	7350.0	NM_001302779	320678.0	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94913391-2	chr8	94912891	94913891	+	605.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033533, exon 2 of 9)	exon (NM_001033533, exon 2 of 9)	4707.0	NM_001033533	234582.0	Mm.277871	NM_001033533	ENSMUSG00000063605	Ccdc102a	BC027663|Gm586	coiled-coil domain containing 102A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-114299854-2	chr13	114299354	114300354	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010887, intron 4 of 4)	intron (NM_010887, intron 4 of 4)	88240.0	NM_010887	17993.0	Mm.253142	NM_010887	ENSMUSG00000021764	Ndufs4	6720411N02Rik|C1-18k	NADH dehydrogenase (ubiquinone) Fe-S protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113668065-2	chr5	113667565	113668565	+	605.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-17675.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101147079-2	chr4	101146579	101147579	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183024, intron 11 of 11)	intron (NM_183024, intron 11 of 11)	78041.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121464906-2	chr9	121464406	121465406	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357968, intron 13 of 14)	intron (NM_001357968, intron 13 of 14)	30788.0	NM_001284508	12424.0	Mm.2619	NM_031161	ENSMUSG00000032532	Cck	-	cholecystokinin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126499720-2	chr8	126499220	126500220	+	605.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24655.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	8.5	2.0	0.0	13.0	1.0	0.0
Merged-chr5-33272573-2	chr5	33272073	33273073	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198860, intron 1 of 9)	intron (NM_001198860, intron 1 of 9)	2431.0	NM_001310535	13016.0	Mm.7286	NM_013502	ENSMUSG00000037373	Ctbp1	BARS|CtBP3/BARS|D4S115h|D5H4S115|D5H4S115E	C-terminal binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27448309-2	chr2	27447809	27448809	+	605.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001113574, exon 13 of 13)	3' UTR (NM_001113574, exon 13 of 13)	2321.0	NR_106102	102466836.0		NR_106102	ENSMUSG00000098812	Mir7578	Gm27789|mmu-mir-7578	microRNA 7578	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29371708-2	chr11	29371208	29372208	+	605.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2464.0	NM_176841	108686.0	Mm.338284	NM_176841	ENSMUSG00000032740	Ccdc88a	A430106J12Rik|AI848406|Ape|C130096N06Rik|C330012F17Rik|D130005J21Rik|Girdin|Giv|Grdn|Hkrp1	coiled coil domain containing 88A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83333273-1	chr8	83332773	83333773	+	605.5	f0_balb.idr	promoter-TSS (NM_001170691)	promoter-TSS (NM_001170691)	-787.0	NM_178736	244548.0	Mm.38762	NM_178736	ENSMUSG00000035151	Elmod2	9830169G11Rik	ELMO/CED-12 domain containing 2	protein-coding	0.0	2.0	1.0	0.0	0.0	0.0
Merged-chr3-95527635-2	chr3	95527135	95528135	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021281, intron 1 of 7)	intron (NM_021281, intron 1 of 7)	849.0	NM_001267695	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120438713-2	chr8	120438213	120439213	+	605.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-50153.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123805466-2	chr9	123804966	123805966	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110253, intron 14 of 17)	B3|SINE|B2	-1011.0	NM_030712	80901.0	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-92514473-2	chr13	92513973	92514973	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173392, intron 5 of 17)	ORR1F|LTR|ERVL-MaLR	16337.0	NM_173392	218441.0	Mm.259585	NM_173392	ENSMUSG00000021706	Zfyve16	AI035632|B130024H06Rik|B130031L15|mKIAA0305	zinc finger, FYVE domain containing 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40629363-2	chr10	40628863	40629863	+	605.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316719)	promoter-TSS (NM_001316719)	-648.0	NM_001316718	70503.0	Mm.252862	NM_027442	ENSMUSG00000063428	Ddo	5330420D20Rik|5730402C02Rik|AI467244	D-aspartate oxidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74243807-2	chr1	74243307	74244307	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 2 of 10)	intron (NM_001357387, intron 2 of 10)	7290.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-51908663-2	chr1	51908163	51909163	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010863, intron 1 of 29)	B1_Mur4|SINE|Alu	7315.0	NM_001161817	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31809403-2	chr2	31808903	31809903	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183424, intron 1 of 1)	intron (NM_183424, intron 1 of 1)	1177.0	NM_183424	227717.0	Mm.185027	NM_183424	ENSMUSG00000043102	Qrfp	P518	pyroglutamylated RFamide peptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-84612465-2	chr6	84611965	84612965	+	605.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18557.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-71830002-2	chr12	71829502	71830502	+	605.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1066.0	NM_026102	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20962862-2	chr18	20962362	20963362	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026301, intron 1 of 5)	intron (NM_026301, intron 1 of 5)	18237.0	NM_026301	67664.0	Mm.45980	NM_026301	ENSMUSG00000033107	Rnf125	4930553F04Rik	ring finger protein 125	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79490351-2	chr8	79489851	79490851	+	605.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90883.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58975641-2	chr15	58975141	58976141	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	41831.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34845606-2	chr17	34845106	34846106	+	605.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105936)	promoter-TSS (NR_105936)	-439.0	NR_105936	102465586.0		NR_105936	ENSMUSG00000098460	Mir6970	Gm27589|mmu-mir-6970	microRNA 6970	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9717560-2	chr3	9717060	9718060	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	-107475.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr5-53407032-2	chr5	53406532	53407532	+	605.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	139926.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112582326-2	chr12	112581826	112582826	+	605.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6458.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-69365611-2	chr18	69365111	69366111	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	19451.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.0	0.0	0.0	0.5	0.0	2.5
Merged-chr17-34947033-2	chr17	34946533	34947533	+	605.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3975.0	NR_028527	100217427.0		NR_028527	ENSMUSG00000093009	Snord52	MBII-297	small nucleolar RNA, C/D box 52	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66618432-2	chr5	66617932	66618932	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310626, intron 1 of 15)	CpG	385.0	NM_009686	11787.0	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr9-94952341-2	chr9	94951874	94952874	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 8 of 15)	Lx8b|LINE|L1	200545.0	NR_106116	102465763.0		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	0.5	37.0	13.0	15.5	7.0	3.0
Merged-chr4-147571234-2	chr4	147570734	147571734	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001014397, intron 3 of 5)	Lx3A|LINE|L1	17957.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76056315-2	chr15	76055815	76056815	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310542, intron 24 of 36)	intron (NM_001310542, intron 24 of 36)	8573.0	NR_105917	102466772.0		NR_105917	ENSMUSG00000098451	Mir6952	Gm27948|mmu-mir-6952	microRNA 6952	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145234202-2	chr6	145233702	145234702	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021284, intron 3 of 4)	intron (NM_021284, intron 3 of 4)	16029.0	NM_021284	16653.0	Mm.383182	NM_021284	ENSMUSG00000030265	Kras	AI929937|K-Ras|K-Ras 2|K-ras|Ki-ras|Kras-2|Kras2|c-K-ras|c-Ki-ras|p21B|ras	Kirsten rat sarcoma viral oncogene homolog	protein-coding	1.5	4.5	0.0	5.5	2.5	2.0
Merged-chr12-29693921-2	chr12	29693419	29694419	+	605.5	f0_balb.idr|f0_c57.idr	intron (NM_001361657, intron 3 of 24)	Lx|LINE|L1	-7474.0	NR_046080	328075.0	Mm.447832	NR_046080	ENSMUSG00000112663	C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA	0.0	0.0	2.0	0.0	7.5	3.0
Merged-chr3-135285316-2	chr3	135284816	135285816	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027208, intron 1 of 9)	intron (NM_027208, intron 1 of 9)	4095.0	NM_027208	69772.0	Mm.45121	NM_027208	ENSMUSG00000028167	Bdh2	1810026B04Rik|Dhrs6	3-hydroxybutyrate dehydrogenase, type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3998808-2	chr19	3998308	3999308	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001320, intron 7 of 7)	intron (NM_001001320, intron 7 of 7)	-1772.0	NM_025529	66387.0	Mm.259222	NM_025529	ENSMUSG00000110949	Nudt8	2310039H17Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79878339-2	chr10	79877839	79878839	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	ID4|SINE|ID	-1328.0	NM_011178	19152.0	Mm.2364	NM_011178	ENSMUSG00000057729	Prtn3	PR3|mPR3	proteinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-21960930-2	chr3	21960430	21961430	+	605.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115722.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61639603-2	chr18	61639103	61640103	+	605.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045420)	promoter-TSS (NR_045420)	-50.0	NR_045420	545261.0	Mm.426593	NR_045420	ENSMUSG00000098098	Bvht	Braveheart|Gm20748	braveheart long non-coding RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-101841694-2	chr6	101841194	101842194	+	605.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67445.0	NR_027989	207157.0	Mm.57632	NM_177579	ENSMUSG00000052236	Gm9871	0610005I04|EG207157	predicted gene 9871	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127443597-2	chr2	127443096	127444096	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029629, intron 1 of 7)	(CA)n|Simple_repeat|Simple_repeat	969.0	NM_029629	68126.0	Mm.288676	NM_029629	ENSMUSG00000027371	Fahd2a	1500003K14Rik|B430104H02Rik|Cgi-105|Fahd2	fumarylacetoacetate hydrolase domain containing 2A	protein-coding	1.5	4.0	0.5	1.5	2.5	8.0
Merged-chr3-19411333-3	chr3	19410822	19411822	+	605.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97273.0	NM_001163536	66326.0	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	0.0	2.0	2.5	0.0	0.0	1.0
Merged-chr7-4483665-2	chr7	4483165	4484165	+	605.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029834, exon 13 of 22)	exon (NM_029834, exon 13 of 22)	-12781.0	NR_028416	320749.0	Mm.396688	NR_028416		D630041G03Rik	-	RIKEN cDNA D630041G03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16016318-4	chr19	16015803	16016803	+	605.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31228.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	20.5	8.0	15.5	11.0	19.0	3.5
Merged-chr5-134676945-2	chr5	134676445	134677445	+	605.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010717, intron 2 of 15)	intron (NM_010717, intron 2 of 15)	1303.0	NM_001305875	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85572389-3	chr1	85571890	85572890	+	605.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	26420.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55342846-3	chr4	55342386	55343386	+	605.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-7156.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	11.0	10.5	9.5	3.0	15.5	20.0
Merged-chr17-8305454-2	chr17	8304954	8305954	+	605.333313	f1_balb.idr|f1_c57bl6.idr	intron (NR_073374, intron 1 of 4)	intron (NR_073374, intron 1 of 4)	-5634.0	NM_001357890	106489.0	Mm.311080	NM_134114	ENSMUSG00000073468	Sft2d1	5630401J11Rik|AA409698	SFT2 domain containing 1	protein-coding	0.0	5.0	1.0	0.0	4.5	3.0
Merged-chr18-60848228-3	chr18	60847750	60848750	+	605.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011552, intron 1 of 24)	B1_Mus1|SINE|Alu	714.0	NM_011552	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15529097-3	chr17	15528590	15529590	+	605.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1789.0	NM_008799	18567.0	Mm.323	NM_008799	ENSMUSG00000014771	Pdcd2	AI528543|Pcd2|RP-8	programmed cell death 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77793394-2	chr18	77792894	77793894	+	605.25	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152167, exon 3 of 3)	non-coding (NR_152167, exon 3 of 3)	-1156.0	NM_013831	19201.0	Mm.57174	NM_013831	ENSMUSG00000025429	Pstpip2	MAYP|cmo	proline-serine-threonine phosphatase-interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4923081-2	chr16	4922581	4923581	+	605.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 10 of 17)	intron (NM_001357062, intron 10 of 17)	-16030.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5093336-2	chr19	5092836	5093836	+	605.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026553)	TTS (NM_026553)	4798.0	NM_026553	68090.0	Mm.44202	NM_026553	ENSMUSG00000024875	Yif1a	5330422J23Rik|54TM|Yif1|Yif1p	Yip1 interacting factor homolog A (S. cerevisiae)	protein-coding	0.0	5.0	0.0	1.0	0.0	0.5
Merged-chr14-48488522-2	chr14	48487992	48488992	+	605.25	f0_balb.idr|f1_c57bl6.idr	intron (NR_132324, intron 9 of 13)	L1MA4|LINE|L1	42140.0	NR_132324	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	0.0	3.5	7.0	5.5	7.5	2.0
Merged-chr1-165775781-2	chr1	165775281	165776281	+	605.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011804)	TTS (NM_011804)	12023.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54401895-2	chr12	54401395	54402395	+	605.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10577.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134368934-2	chr1	134368434	134369434	+	605.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6928.0	NR_151737	57439.0	Mm.393140	NM_020588	ENSMUSG00000042305	Tmem183a	1300007B12Rik|1700020N19Rik|Tmem183	transmembrane protein 183A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-31766922-4	chr18	31766413	31767413	+	605.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153515, intron 2 of 7)	intron (NM_153515, intron 2 of 7)	6297.0	NM_001242430	225339.0	Mm.290804	NM_153515	ENSMUSG00000041915	Ammecr1l	5430429D03Rik|AU022236|AU040755|AW111353|E230022H04Rik	AMME chromosomal region gene 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114849660-2	chr6	114849160	114850160	+	605.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	72161.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70192107-3	chr14	70191600	70192600	+	605.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001271408, exon 12 of 21)	exon (NM_001271408, exon 12 of 21)	146.0	NM_001271409	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-101980412-3	chr12	101979906	101980906	+	605.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016856, intron 1 of 14)	RMER4B|LTR|ERVK	4432.0	NM_016856	51786.0	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	0.0	5.0	1.0	0.0	2.0	1.0
Merged-chr3-65660303-1	chr3	65659803	65660803	+	605.0	f1_balb.idr	TTS (NR_106200)	TTS (NR_106200)	1015.0	NR_106200	102465905.0		NR_106200	ENSMUSG00000098944	Mir8120	Gm27637|mmu-mir-8120	microRNA 8120	ncRNA	2.5	0.0	11.5	3.0	9.0	5.5
Merged-chr2-119475149-1	chr2	119474649	119475649	+	605.0	f1_balb.idr	intron (NM_026574, intron 1 of 35)	intron (NM_026574, intron 1 of 35)	2480.0	NM_026574	68142.0	Mm.330496	NM_026574	ENSMUSG00000034154	Ino80	2310079N15Rik|4632409L19Rik|Inoc1	INO80 complex subunit	protein-coding	15.0	18.5	3.0	1.5	15.5	3.5
Merged-chr14-103472409-1	chr14	103471909	103472909	+	605.0	f0_c57.idr	Intergenic	Intergenic	-40932.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-23236972-2	chr8	23236452	23237452	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024240, intron 2 of 7)	intron (NM_024240, intron 2 of 7)	716.0	NM_024240	109145.0	Mm.27945	NM_024240	ENSMUSG00000031546	Gins4	2810037C03Rik|4933405K01Rik|Sld5	GINS complex subunit 4 (Sld5 homolog)	protein-coding	0.0	3.0	3.5	1.5	2.0	3.5
Merged-chr1-177556019-2	chr1	177555519	177556519	+	605.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86924.0	NR_037994	75589.0	Mm.86666	NR_037994	ENSMUSG00000101746	2310043L19Rik	-	RIKEN cDNA 2310043L19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52802356-1	chr6	52801856	52802856	+	605.0	f0_balb.idr	intron (NM_173406, intron 3 of 4)	intron (NM_173406, intron 3 of 4)	88191.0	NM_001355596	52440.0	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101657817-1	chr4	101657317	101658317	+	605.0	f1_c57bl6.idr	intron (NM_175036, intron 3 of 3)	intron (NM_175036, intron 3 of 3)	10034.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	20.5	20.5	28.0	4.5	19.0	15.0
Merged-chr7-97186020-2	chr7	97185520	97186520	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	104269.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	2.0	3.5	9.5	2.0	0.5	4.0
Merged-chr19-5695478-2	chr19	5694954	5695954	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022012, intron 4 of 11)	intron (NM_022012, intron 4 of 11)	6323.0	NM_022012	26403.0	Mm.185026	NM_022012	ENSMUSG00000004054	Map3k11	2610017K16Rik|Mlk3|PTK1|SPRK	mitogen-activated protein kinase kinase kinase 11	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr6-122856813-2	chr6	122856313	122857313	+	605.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009779)	promoter-TSS (NM_009779)	-656.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64414635-2	chr5	64414097	64415097	+	605.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	53345.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	4.5	10.5	3.0	13.0	11.0	9.0
Merged-chr10-12471942-2	chr10	12471442	12472442	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 57 of 73)	Lx9|LINE|L1	389793.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180924906-2	chr1	180924406	180925406	+	605.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10116.0	NM_010094	13590.0	Mm.378911	NM_010094	ENSMUSG00000038793	Lefty1	AI450052|Ebaf|Leftb|Stra3|Tgfb4|lefty|lefty-1	left right determination factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21088475-2	chr9	21087975	21088975	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038081, intron 2 of 16)	intron (NR_038081, intron 2 of 16)	3513.0	NM_027911	71766.0	Mm.196137	NM_027911	ENSMUSG00000010205	Raver1	1300006N24Rik|AA050359|mKIAA1978	ribonucleoprotein, PTB-binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-61973351-2	chr4	61972851	61973851	+	605.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80766.0	NM_001012323	381530.0	Mm.460005	NM_001012323	ENSMUSG00000078672	Mup20	Gm12560|Mup24|darcin	major urinary protein 20	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr1-64123774-2	chr1	64123274	64124274	+	605.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2385.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-51551996-2	chr5	51551500	51552500	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_132764, intron 1 of 12)	intron (NR_132764, intron 1 of 12)	1921.0	NR_027710	19017.0	Mm.259072	NM_008904	ENSMUSG00000029167	Ppargc1a	A830037N07Rik|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	protein-coding	9.5	15.0	12.0	11.0	15.5	3.5
Merged-chr8-125460901-1	chr8	125460401	125461401	+	605.0	f1_c57bl6.idr	intron (NM_001357372, intron 10 of 21)	intron (NM_001357372, intron 10 of 21)	31932.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	25.5	31.0	50.0	9.0	6.5	7.5
Merged-chr17-10727893-1	chr17	10727393	10728393	+	605.0	f0_balb.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	112298.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-130093405-2	chr10	130092905	130093905	+	605.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18993.0	NM_146671	258666.0	Mm.377628	NM_146671	ENSMUSG00000058251	Olfr822	MOR113-2	olfactory receptor 822	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107540905-1	chr9	107540405	107541405	+	605.0	f1_balb.idr	intron (NM_001357291, intron 2 of 2)	intron (NM_001357291, intron 2 of 2)	960.0	NM_019720	56368.0	Mm.24833	NM_019720	ENSMUSG00000037190	Cyb561d2	AW049681|Tsp10	cytochrome b-561 domain containing 2	protein-coding	5.5	2.0	8.0	1.0	5.0	5.5
Merged-chr4-55118046-1	chr4	55117546	55118546	+	605.0	f0_balb.idr	Intergenic	Intergenic	170101.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	1.0	1.0	1.5	4.0	0.0	4.5
Merged-chr2-168542875-2	chr2	168542375	168543375	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037177, intron 3 of 6)	intron (NM_001037177, intron 3 of 6)	47490.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167633137-1	chr2	167632637	167633637	+	605.0	f0_balb.idr	Intergenic	Intergenic	-1132.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99465597-1	chr7	99465097	99466097	+	605.0	f1_c57bl6.idr	promoter-TSS (NM_028145)	promoter-TSS (NM_028145)	-407.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	3.5	1.0	0.0	0.0	0.0	4.5
Merged-chr1-64447162-2	chr1	64446662	64447662	+	605.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85642.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-12543066-2	chr11	12542566	12543566	+	605.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78106.0	NM_001282993	12808.0	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70354914-2	chr8	70354420	70355420	+	605.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1641.0	NM_001122829	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	14.0	51.5	28.0	20.0	29.0	11.5
Merged-chr2-128793281-2	chr2	128792781	128793781	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 17 of 18)	intron (NM_008587, intron 17 of 18)	-25022.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	2.0	2.0	2.5	0.0	4.0	0.0
Merged-chr9-110870461-1	chr9	110869961	110870961	+	605.0	f1_balb.idr	intron (NM_146260, intron 4 of 5)	intron (NM_146260, intron 4 of 5)	9622.0	NM_146260	20776.0	Mm.390229	NM_146260	ENSMUSG00000049555	Tmie	5131400L21Rik|Mm.87012|sr	transmembrane inner ear	protein-coding	0.0	0.5	3.5	4.0	0.0	2.5
Merged-chr7-45150125-1	chr7	45149625	45150625	+	605.0	f1_c57bl6.idr	intron (NM_145954, intron 1 of 16)	intron (NM_145954, intron 1 of 16)	-4178.0	NM_029406	68845.0	Mm.181689	NM_029406	ENSMUSG00000003423	Pih1d1	1110061L23Rik|4933413A04Rik|Nop17	PIH1 domain containing 1	protein-coding	5.5	1.5	2.0	1.5	2.0	2.5
Merged-chr15-59863786-1	chr15	59863286	59864286	+	605.0	f1_c57bl6.idr	Intergenic	Lx2A1|LINE|L1	-68827.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	2.5	1.5	6.0	16.5	14.5	8.0
Merged-chr15-8992793-2	chr15	8992293	8993293	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198024, intron 1 of 13)	intron (NM_198024, intron 1 of 13)	24844.0	NM_198024	223332.0	Mm.321371	NM_198024	ENSMUSG00000048424	Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135182800-2	chr5	135182300	135183300	+	605.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009745)	TTS (NM_009745)	-4523.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61272447-2	chr10	61271947	61272947	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081127, intron 1 of 21)	intron (NM_001081127, intron 1 of 21)	991.0	NM_001081127	237360.0	Mm.333252	NM_001081127	ENSMUSG00000059901	Adamts14	Adamts-14|TS14	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161406622-2	chr1	161406131	161407131	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009452, intron 1 of 2)	intron (NM_009452, intron 1 of 2)	11193.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	5.5	1.5	6.5	6.0	11.5	9.5
Merged-chr2-112268651-2	chr2	112268151	112269151	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133649, intron 1 of 24)	L1_Mus3|LINE|L1	2337.0	NM_133649	107723.0	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38393757-1	chr18	38393257	38394257	+	605.0	f0_balb.idr	Intergenic	MER33|DNA|hAT-Charlie	-25150.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121291069-1	chr3	121290569	121291569	+	605.0	f1_c57bl6.idr	promoter-TSS (NM_024178)	promoter-TSS (NM_024178)	-671.0	NR_155539	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	3.5	7.5	3.5	1.0	13.0	0.5
Merged-chr2-70092885-1	chr2	70092385	70093385	+	605.0	f0_balb.idr	intron (NM_177376, intron 2 of 34)	MLT2B1|LTR|ERVL	53759.0	NM_177376	329421.0	Mm.99648	NM_177376	ENSMUSG00000042064	Myo3b	A430065P19Rik	myosin IIIB	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100627722-2	chr11	100627222	100628222	+	605.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028024)	TTS (NM_028024)	4767.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27853921-2	chr17	27853421	27854421	+	605.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-2586.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	0.5	3.5	0.0	1.5	2.0	0.0
Merged-chr4-137855801-2	chr4	137855301	137856301	+	605.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6436.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	0.5	6.5	3.5	1.0	2.5	2.0
Merged-chr4-129698245-2	chr4	129697750	129698750	+	605.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1405.0	NM_001356378	230770.0	Mm.257157	NM_199305	ENSMUSG00000053730	Tmem39b	6330509E05Rik|BC037095	transmembrane protein 39b	protein-coding	0.0	4.0	1.0	2.5	7.0	0.5
Merged-chr2-167796663-2	chr2	167796163	167797163	+	605.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105486.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39505936-1	chr1	39505436	39506436	+	605.0	f0_balb.idr	Intergenic	Intergenic	-27181.0	NM_001357521	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166073591-1	chr2	166073091	166074091	+	605.0	f1_c57bl6.idr	TTS (NM_028072)	TTS (NM_028072)	80954.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	2.0	6.0	0.0	1.0	0.0	4.5
Merged-chr14-30881473-3	chr14	30880974	30881974	+	605.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_181390, exon 3 of 3)	3' UTR (NM_181390, exon 3 of 3)	2217.0	NM_181390	66175.0	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	0.0	0.0	2.5	0.0	1.5	0.0
Merged-chr5-140510775-3	chr5	140510274	140511274	+	605.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021528, intron 1 of 1)	intron (NM_021528, intron 1 of 1)	5165.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110668882-2	chr7	110668382	110669382	+	605.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41225.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-122906758-1	chr9	122906258	122907258	+	605.0	f0_c57.idr	intron (NM_001353989, intron 2 of 2)	intron (NM_001353989, intron 2 of 2)	3512.0	NM_001353989	666257.0	Mm.390242	NM_001353989		Gm8008	EG666257|Znf660	predicted gene 8008	protein-coding	3.0	4.0	1.0	2.0	3.5	0.0
Merged-chr15-67321626-2	chr15	67321120	67322120	+	605.0	f0_balb.idr|f0_c57.idr	intron (NR_045140, intron 5 of 8)	RLTR24B_MM|LTR|ERV1	94851.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	5.5	18.0	2.5	0.0	2.5	3.0
Merged-chr13-70078698-2	chr13	70078198	70079198	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_131156, intron 2 of 2)	intron (NR_131156, intron 2 of 2)	-50350.0	NR_045965	74280.0	Mm.273343	NR_045965	ENSMUSG00000099639	1700084F23Rik	1700003E18Rik|4930589D02Rik	RIKEN cDNA 1700084F23 gene	ncRNA	14.0	0.5	10.0	3.0	0.0	6.0
Merged-chr10-96471725-2	chr10	96471225	96472225	+	605.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-145276.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83305586-2	chr11	83305086	83306086	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027915, intron 1 of 20)	ID2|SINE|ID	2889.0	NM_001035854	71770.0	Mm.39053	NM_027915	ENSMUSG00000035152	Ap2b1	1300012O03Rik|AI788979|AP105B	adaptor-related protein complex 2, beta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-43090787-2	chr9	43090287	43091287	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359232, intron 1 of 40)	intron (NM_001359232, intron 1 of 40)	14931.0	NM_001359232	69632.0	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	13.0	0.0	0.0	2.0	0.0	2.0
Merged-chr6-34453319-2	chr6	34452819	34453819	+	605.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23037.0	NM_007563	12183.0	Mm.282863	NM_007563	ENSMUSG00000038871	Bpgm	AI323730|AL022789|C86192	2,3-bisphosphoglycerate mutase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109353207-1	chr3	109352707	109353707	+	605.0	f0_balb.idr	intron (NM_020505, intron 1 of 26)	intron (NM_020505, intron 1 of 26)	12524.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	1.5	0.0	0.5	7.5	1.5	3.0
Merged-chr12-102617224-2	chr12	102616724	102617724	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 3 of 9)	intron (NM_172584, intron 3 of 9)	62283.0	NM_007693	12652.0	Mm.4137	NM_007693	ENSMUSG00000021194	Chga	ChrA|cgA	chromogranin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120188440-2	chr6	120187940	120188940	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-5383.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88216743-2	chr1	88216243	88217243	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201642, intron 4 of 4)	B3A|SINE|B2	4784.0	NM_201645	394436.0	Mm.300095	NM_201645	ENSMUSG00000089960	Ugt1a1	Gnt1|UDPGT 1-1|UGT1A01|Udpgt-1a|UgtBr1	UDP glucuronosyltransferase 1 family, polypeptide A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-149187434-2	chr6	149186934	149187934	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113424, intron 1 of 6)	ID_B1|SINE|B4	1278.0	NM_001356344	232566.0	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170856119-2	chr1	170855619	170856619	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 1 of 15)	intron (NM_001081304, intron 1 of 15)	11652.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-146130365-1	chr2	146129865	146130865	+	605.0	f1_c57bl6.idr	Intergenic	Intergenic	-91632.0	NM_016889	53626.0	Mm.379070	NM_016889	ENSMUSG00000068154	Insm1	IA-1	insulinoma-associated 1	protein-coding	0.0	1.0	1.5	0.0	1.0	0.0
Merged-chr17-15751424-1	chr17	15750924	15751924	+	605.0	f1_balb.idr	intron (NM_007690, intron 22 of 35)	B2_Mm1t|SINE|B2	46457.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	0.0	2.5	0.0	0.0	3.0	0.0
Merged-chr4-141571425-1	chr4	141570925	141571925	+	605.0	f0_balb.idr	Intergenic	Intergenic	25263.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	10.0	0.0	0.0	0.0	0.0	0.5
Merged-chr7-19702138-2	chr7	19701638	19702638	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109748, intron 8 of 8)	B1_Mur3|SINE|Alu	-2950.0	NM_009696	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-16981480-2	chr11	16980980	16981980	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 9 of 9)	intron (NM_019549, intron 9 of 9)	27238.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	2.0	1.5	4.0	1.0	8.0	1.5
Merged-chr11-94330368-1	chr11	94329868	94330868	+	605.0	f1_c57bl6.idr	intron (NM_027799, intron 1 of 4)	L2a|LINE|L2	2367.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0.0	0.0	0.0	0.0	2.0	1.0
Merged-chr1-9903139-1	chr1	9902639	9903639	+	605.0	f0_balb.idr	TTS (NM_177547)	TTS (NM_177547)	-5499.0	NM_177722	240697.0	Mm.259800	NM_177722	ENSMUSG00000046101	Mcmdc2	6030422M02Rik	minichromosome maintenance domain containing 2	protein-coding	3.0	4.0	3.0	2.5	0.0	6.0
Merged-chr12-83486628-2	chr12	83486128	83487128	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_058212, intron 1 of 8)	CpG	1108.0	NM_001267626	70127.0	Mm.151308	NM_058212	ENSMUSG00000021221	Dpf3	2810403B03Rik|6530402L11Rik|BAF45C|C78788|CERD4|cer-d4	D4, zinc and double PHD fingers, family 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-48012493-2	chr2	48011993	48012993	+	605.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-801616.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50784272-1	chr15	50783772	50784772	+	605.0	f0_balb.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	104777.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	4.5	0.0	3.0	0.0	0.0	0.5
Merged-chr9-119351122-2	chr9	119350622	119351622	+	605.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_130864)	TTS (NM_130864)	-6259.0	NM_001199568	102448.0	Mm.219497	NM_001033209	ENSMUSG00000035769	Xylb	AI132223|AI327421	xylulokinase homolog (H. influenzae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114925481-2	chr6	114924981	114925981	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	-3660.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95294444-2	chr10	95293944	95294944	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	29265.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9714186-1	chr3	9713686	9714686	+	605.0	f0_balb.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	-104101.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39529228-2	chr6	39528728	39529728	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172477, intron 1 of 18)	intron (NM_172477, intron 1 of 18)	28606.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139438909-2	chr5	139438409	139439409	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	B1_Mur3|SINE|Alu	15730.0	NM_029771	76854.0	Mm.389706	NM_029771	ENSMUSG00000053647	Gper1	6330420K13Rik|CMKRL2|Ceprl|FEG-1|GPCR-Br|Gper|Gpr30	G protein-coupled estrogen receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78301771-2	chr15	78301271	78302271	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001287389, intron 1 of 11)	B4A|SINE|B4	3950.0	NM_007781	12984.0	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	1.5	13.5	7.0	9.0	11.0	7.5
Merged-chr11-116027434-1	chr11	116026934	116027934	+	605.0	f0_c57.idr	Intergenic	Intergenic	-2882.0	NM_001286006	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	15.5	43.0	19.0	14.5	46.0	16.0
Merged-chr12-89302387-2	chr12	89301887	89302887	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198587, intron 7 of 19)	intron (NM_001198587, intron 7 of 19)	348997.0	NM_172544	18191.0	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-24245563-1	chr14	24245063	24246063	+	605.0	f0_balb.idr	5' UTR (NM_027726, exon 1 of 31)	5' UTR (NM_027726, exon 1 of 31)	357.0	NM_001163513	71228.0	Mm.68971	NM_027726	ENSMUSG00000021782	Dlg5	4933429D20Rik|T25557|mKIAA0583	discs large MAGUK scaffold protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-95467358-1	chr14	95466858	95467858	+	605.0	f1_balb.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-413896.0	NM_001358241	66732.0	Mm.75060	NM_025733	ENSMUSG00000034689	4921530L21Rik	-	RIKEN cDNA 4921530L21 gene	protein-coding	0.0	2.5	3.0	1.0	6.0	5.5
Merged-chr9-105804075-1	chr9	105803575	105804575	+	605.0	f0_balb.idr	intron (NM_001102607, intron 1 of 36)	ID_B1|SINE|B4	5573.0	NM_172927	245026.0	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding	1.0	1.0	5.5	1.0	1.0	5.5
Merged-chr6-106747859-1	chr6	106747359	106748359	+	605.0	f1_c57bl6.idr	intron (NM_008370, intron 1 of 12)	intron (NM_008370, intron 1 of 12)	1178.0	NM_008370	16192.0	Mm.3448	NM_008370	ENSMUSG00000005364	Il5ra	CD125|CDw125|Il5r	interleukin 5 receptor, alpha	protein-coding	3.0	3.5	6.5	14.5	2.0	10.5
Merged-chr14-16433481-2	chr14	16432981	16433981	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289760, intron 9 of 9)	intron (NM_001289760, intron 9 of 9)	68275.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8752135-1	chr19	8751635	8752635	+	605.0	f1_balb.idr	intron (NM_019829, intron 9 of 9)	intron (NM_019829, intron 9 of 9)	4834.0	NR_132423	102640359.0	Mm.440831	NR_132423		1700023D09Rik	AV208457	RIKEN cDNA 1700023D09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148071681-2	chr4	148071181	148072181	+	605.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16383.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28344073-2	chr7	28343573	28344573	+	605.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MURVY-LTR|LTR|ERV1	-5354.0	NM_013676	20924.0	Mm.285906	NM_013676	ENSMUSG00000003435	Supt5	AL033283|AL033321|AU019549|Spt5|Supt5h	suppressor of Ty 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125567879-1	chr8	125567379	125568379	+	605.0	f1_balb.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	1984.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	31.5	86.5	69.0	31.0	74.0	42.0
Merged-chr2-51940043-2	chr2	51939543	51940543	+	605.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4880.0	NM_001355606	71684.0	Mm.28309	NM_030243	ENSMUSG00000036249	Rbm43	0610033I05Rik	RNA binding motif protein 43	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23866673-2	chr18	23866173	23867173	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	62703.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19087610-2	chr7	19087110	19088110	+	605.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_037282)	TTS (NR_037282)	782.0	NR_037282	100526504.0		NR_037282	ENSMUSG00000092659	Mir3100	mir-3100|mmu-mir-3100	microRNA 3100	ncRNA	0.0	2.5	1.5	0.0	0.0	1.0
Merged-chr2-113807852-2	chr2	113807352	113808352	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009162, intron 2 of 5)	intron (NM_009162, intron 2 of 5)	21239.0	NM_009162	20394.0	Mm.4836	NM_009162	ENSMUSG00000023236	Scg5	7B2|AI325031|Sgne-1|Sgne1	secretogranin V	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr11-101583883-2	chr11	101583383	101584383	+	604.974976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359325, intron 2 of 7)	intron (NM_001359325, intron 2 of 7)	1584.0	NM_001359325	217203.0	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64223357-3	chr1	64222863	64223863	+	604.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101974.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-15126859-3	chr3	15126345	15127345	+	604.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	155644.0	NR_040550	77127.0	Mm.195792	NR_040549	ENSMUSG00000098008	A930001A20Rik	-	RIKEN cDNA A930001A20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132783981-2	chr4	132783500	132784500	+	604.75	f0_balb.idr|f1_c57bl6.idr	intron (NM_001033308, intron 4 of 5)	intron (NM_001033308, intron 4 of 5)	12364.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	11.5	57.5	14.0	4.0	16.0	5.5
Merged-chr2-103059419-3	chr2	103058926	103059926	+	604.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175094, intron 1 of 10)	intron (NM_175094, intron 1 of 10)	14087.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141473584-1	chr4	141473084	141474084	+	604.666687	f1_c57bl6.idr	exon (NM_019763, exon 12 of 16)	exon (NM_019763, exon 12 of 16)	28911.0	NM_009541	22642.0	Mm.389590	NM_009541	ENSMUSG00000006215	Zbtb17	AA589413|Lp-1|Miz1|Zfp100|mZ13	zinc finger and BTB domain containing 17	protein-coding	0.0	0.0	0.5	0.0	0.0	2.0
Merged-chr8-34963233-1	chr8	34962733	34963733	+	604.666687	f0_balb.idr	intron (NM_175091, intron 1 of 26)	intron (NM_175091, intron 1 of 26)	2457.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	5.0	27.5	19.5	11.5	14.5	12.0
Merged-chr18-82848174-3	chr18	82847688	82848688	+	604.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7709.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59839199-1	chr13	59838699	59839699	+	604.666687	f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-16052.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0.0	4.5	1.0	0.0	6.5	2.0
Merged-chr1-180604779-3	chr1	180604276	180605276	+	604.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17575.0	NR_105869	102466761.0		NR_105869	ENSMUSG00000098926	Mir6904	Gm27426|mmu-mir-6904	microRNA 6904	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8695570-2	chr19	8695070	8696070	+	604.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18327.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51247586-1	chr14	51247086	51248086	+	604.666687	f0_balb.idr	Intergenic	Intergenic	8526.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	0.0	2.0	4.5	14.0	9.5	16.0
Merged-chr1-33757084-2	chr1	33756619	33757619	+	604.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145392, intron 1 of 2)	intron (NM_145392, intron 1 of 2)	631.0	NM_145392	213539.0	Mm.247037	NM_145392	ENSMUSG00000042215	Bag2	2610042A13Rik|BC016230	BCL2-associated athanogene 2	protein-coding	4.0	3.0	1.5	2.0	2.5	1.5
Merged-chr10-8857108-2	chr10	8856592	8857592	+	604.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	Charlie13a|DNA|hAT-Charlie	28978.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.5	5.0	7.0	2.0	8.0	13.0
Merged-chr11-29821434-2	chr11	29820934	29821934	+	604.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_176829)	TTS (NM_176829)	4234.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	2.0	0.5	1.0	2.0	0.5	1.0
Merged-chr14-62935403-2	chr14	62934903	62935903	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 6 of 11)	intron (NM_175546, intron 6 of 11)	49107.0	NM_001037751	432867.0	Mm.99387	NM_001037751	ENSMUSG00000075574	Defb48	Defb42|EG432867	defensin beta 48	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr14-21019263-2	chr14	21018807	21019807	+	604.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009502, exon 15 of 21)	exon (NM_009502, exon 15 of 21)	33135.0	NM_018829	55946.0	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	0.0	2.0	1.5	1.0	0.0	0.0
Merged-chr2-180699822-2	chr2	180699322	180700322	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291432, intron 1 of 5)	intron (NM_001291432, intron 1 of 5)	2280.0	NM_011805	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-115957631-2	chr13	115957138	115958138	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	352050.0	NM_021459	16392.0	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	10.0	12.5	9.0	3.0	15.0	6.5
Merged-chr19-53266674-2	chr19	53266174	53267174	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11469.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67939715-2	chr18	67939215	67940215	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	6542.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-21679213-1	chr4	21678713	21679713	+	604.5	f0_balb.idr	exon (NM_001080771, exon 4 of 4)	exon (NM_001080771, exon 4 of 4)	6750.0	NM_001080771	230025.0	Mm.208541	NM_001080771	ENSMUSG00000040478	Prdm13	-	PR domain containing 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73029276-2	chr2	73028776	73029776	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-48830.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34208445-2	chr8	34207945	34208945	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41733.0	NR_105820	102465211.0		NR_105820	ENSMUSG00000098785	Mir6395	Gm27561|mmu-mir-6395	microRNA 6395	ncRNA	7.0	9.0	8.5	3.5	3.0	10.5
Merged-chr13-8061301-2	chr13	8060801	8061801	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-141565.0	NM_001289530	94191.0	Mm.425794	NM_052977	ENSMUSG00000052551	Adarb2	Adar3|RED2	adenosine deaminase, RNA-specific, B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60958864-2	chr10	60958364	60959364	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1859.0	NR_130327	100316671.0		NR_130327	ENSMUSG00000080526	Mir466j	Mirn466j|mmu-mir-466j	microRNA 466j	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-127108910-2	chr6	127108410	127109410	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177003, intron 1 of 5)	intron (NM_177003, intron 1 of 5)	642.0	NM_177003	319801.0	Mm.101836	NM_177003	ENSMUSG00000038028	Tigar	9630033F20Rik|AA793651|AI595337|C79710|C85509	Trp53 induced glycolysis repulatory phosphatase	protein-coding	0.0	0.0	0.0	1.0	0.0	6.0
Merged-chr6-128357614-2	chr6	128357114	128358114	+	604.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001326585, exon 3 of 3)	3' UTR (NM_001326585, exon 3 of 3)	-1763.0	NM_011657	22158.0	Mm.291783	NM_011657	ENSMUSG00000001521	Tulp3	2310022L06Rik|AI316887	tubby-like protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-34295863-2	chr4	34295363	34296363	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-245796.0	NM_026293	67652.0	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102411280-2	chr15	102410780	102411780	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013672, intron 3 of 5)	B3A|SINE|B2	4964.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25272116-2	chr17	25271621	25272621	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011665, intron 1 of 6)	PB1D7|SINE|Alu	1310.0	NM_001177610	22196.0	Mm.240044	NM_011665	ENSMUSG00000015120	Ube2i	5830467E05Rik|UBC9|Ubce2i|Ubce9	ubiquitin-conjugating enzyme E2I	protein-coding	0.5	3.0	9.0	0.0	1.0	6.0
Merged-chr10-30785019-2	chr10	30784519	30785519	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 1 of 14)	intron (NM_001358842, intron 1 of 14)	18307.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84054250-2	chr15	84053750	84054750	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029946, intron 2 of 31)	intron (NM_029946, intron 2 of 31)	11099.0	NM_029946	77627.0	Mm.196288	NM_029946	ENSMUSG00000022441	Efcab6	4931407K02Rik|4932408N08Rik|bM150J22.2|mKIAA1672	EF-hand calcium binding domain 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116196597-2	chr6	116196097	116197097	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR21|LTR|ERVK	-3223.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-82967191-2	chr10	82966691	82967691	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18306.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	5.5	0.0	0.0	9.0	4.0	1.5
Merged-chr1-128357590-2	chr1	128357088	128358088	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008567, intron 1 of 16)	ID4_|SINE|ID	2117.0	NM_001313695	17219.0	Mm.4933	NM_008567	ENSMUSG00000026355	Mcm6	ASP-l1|D1Wsu22e|Mcmd6	minichromosome maintenance complex component 6	protein-coding	26.5	21.0	22.0	32.5	19.0	15.0
Merged-chr8-94307160-2	chr8	94306660	94307660	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357268, intron 14 of 20)	intron (NM_001357268, intron 14 of 20)	-17151.0	NR_029552	723956.0		NR_029552	ENSMUSG00000065512	Mir138-2	Mirn138-2|mir-138-2	microRNA 138-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129547554-2	chr2	129547054	129548054	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10952.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	22.5	52.5	26.5	19.5	38.5	43.0
Merged-chr2-19641132-2	chr2	19640632	19641632	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_LTR|LTR|ERV1	16765.0	NR_033642	100041244.0	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43009011-2	chr4	43008511	43009511	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053081, intron 3 of 13)	intron (NM_053081, intron 3 of 13)	1290.0	NM_001163233	60534.0	Mm.23122	NM_053081	ENSMUSG00000028453	Fancg	AU041407|Xrcc9	Fanconi anemia, complementation group G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163062971-2	chr2	163062471	163063471	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008652, intron 4 of 13)	intron (NM_008652, intron 4 of 13)	-5119.0	NR_105970	102465607.0		NR_105970	ENSMUSG00000099091	Mir7003	Gm27340|mmu-mir-7003	microRNA 7003	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-48827277-2	chr11	48826777	48827777	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053166, intron 1 of 6)	intron (NM_053166, intron 1 of 6)	1139.0	NM_053166	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4235356-2	chr11	4234856	4235856	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1429.0	NM_001013365	18413.0	Mm.131422	NM_001013365	ENSMUSG00000058755	Osm	OncoM	oncostatin M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-43173794-2	chr10	43173294	43174294	+	604.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102361)	promoter-TSS (NR_102361)	736.0	NM_175407	109205.0	Mm.153750	NM_175407	ENSMUSG00000038248	Sobp	2900009C16Rik|5330439J01Rik|JXC1|jc	sine oculis binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106156806-2	chr11	106156306	106157306	+	604.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001356459, exon 5 of 5)	3' UTR (NM_001356459, exon 5 of 5)	3121.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153216070-2	chr2	153215570	153216570	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9371.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	0.5	4.5	4.0	0.5	4.5	4.5
Merged-chr7-98344523-2	chr7	98344023	98345023	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16765.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120724222-2	chr8	120723722	120724722	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-12136.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-76041536-2	chr9	76041036	76042036	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173731, intron 1 of 8)	intron (NM_173731, intron 1 of 8)	26559.0	NM_173731	208982.0	Mm.82306	NM_173731	ENSMUSG00000007908	Hmgcll1	BC037381	3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120848344-2	chr10	120847844	120848844	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177092, intron 4 of 6)	intron (NM_177092, intron 4 of 6)	-9285.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105367818-2	chr8	105367318	105368318	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081332, intron 15 of 15)	intron (NM_001081332, intron 15 of 15)	-7563.0	NM_001081333	102075.0	Mm.32034	NM_175321	ENSMUSG00000014782	Plekhg4	4931414L13Rik|AI448583|mFLJ00068	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118446665-2	chr11	118446165	118447165	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204130, intron 3 of 3)	intron (NM_001204130, intron 3 of 3)	3131.0	NM_001204130	56745.0	Mm.23845	NM_019959	ENSMUSG00000017446	C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88354323-2	chr17	88353823	88354823	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-86381.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-20937612-2	chr5	20937104	20938104	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080977, intron 1 of 7)	B2_Mm1a|SINE|B2	-13385.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27745795-2	chr2	27745295	27746295	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 4 of 9)	intron (NM_001290481, intron 4 of 9)	35212.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144692597-2	chr2	144692097	144693097	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025314, intron 4 of 5)	RMER1B|Other|Other	92644.0	NM_025314	66044.0	Mm.28109	NM_025314	ENSMUSG00000027430	Dtd1	0610006H08Rik|DTD|DUE-B|Hars2	D-tyrosyl-tRNA deacylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-47318657-2	chr4	47318157	47319157	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A2|LTR|ERVK	-34565.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71299680-2	chr17	71299179	71300179	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	B1_Mus1|SINE|Alu	11332.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	26.5	33.0	21.5	41.5	53.5	54.5
Merged-chr19-41325216-2	chr19	41324716	41325716	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 6 of 16)	B3|SINE|B2	59854.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27122636-2	chr14	27122152	27123152	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21341.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	6.0	21.0	13.5	8.5	9.0	5.5
Merged-chr17-56116206-2	chr17	56115706	56116706	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077348, intron 3 of 7)	intron (NM_001077348, intron 3 of 7)	1092.0	NM_001077348	66968.0	Mm.254985	NM_025874	ENSMUSG00000011305	Plin5	2310076L09Rik|AI415325|AW109675|Lsdp5|MLDP|PAT-1	perilipin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102747474-2	chr14	102746974	102747974	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	235158.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29758661-2	chr6	29758161	29759161	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176996, intron 9 of 11)	intron (NM_176996, intron 9 of 11)	-9782.0	NM_021414	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95599497-2	chr9	95598997	95599997	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38131.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10697409-2	chr19	10696909	10697909	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	L1MEc|LINE|L1	-3359.0	NM_001361964	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36628490-2	chr16	36627990	36628990	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 2 of 7)	intron (NM_019388, intron 2 of 7)	37587.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-51750494-2	chr16	51749994	51750994	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	236793.0	NR_153657	629091.0	Mm.364775	NR_153657		Gm29686	-	predicted gene, 29686	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161398409-2	chr1	161397909	161398909	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009452, intron 1 of 2)	intron (NM_009452, intron 1 of 2)	2971.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	14.0	2.0	0.0	0.0	0.0	0.0
Merged-chr17-80800589-2	chr17	80800089	80801089	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-72564.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122094721-2	chr7	122094229	122095229	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360744, intron 2 of 4)	ORR1B1|LTR|ERVL-MaLR	7119.0	NR_153798	70316.0	Mm.3014	NM_028177	ENSMUSG00000030869	Ndufab1	2210401F17Rik|2310039H15Rik|2610003B19Rik|8kDa|9130423F15Rik|ACP|CI-SDAP|SDAP	NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97850680-2	chr15	97850180	97851180	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6178.0	NM_001204278	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116226944-2	chr6	116226444	116227444	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026585, intron 14 of 30)	intron (NM_026585, intron 14 of 30)	18911.0	NM_026585	28006.0	Mm.28524	NM_026585	ENSMUSG00000024104	Washc2	A130095H06|C530005J20Rik|D6Wsu116e|Fam21	WASH complex subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167822528-2	chr2	167822028	167823028	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-109799.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25191310-2	chr8	25190810	25191810	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177089, intron 2 of 12)	MLT1F|LTR|ERVL-MaLR	10232.0	NM_199323	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133361470-2	chr4	133360970	133361970	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8265.0	NM_016981	20544.0	Mm.4312	NM_016981	ENSMUSG00000028854	Slc9a1	AW554487|Apnh|Mir5122|Nhe1|mir-5122|swe	solute carrier family 9 (sodium/hydrogen exchanger), member 1	protein-coding	0.0	4.0	0.5	0.0	11.5	1.0
Merged-chr13-77005819-1	chr13	77005319	77006319	+	604.5	f0_balb.idr	intron (NM_030174, intron 17 of 20)	Lx8b|LINE|L1	129649.0	NM_134071	105377.0	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding	0.0	13.5	7.5	0.5	3.5	2.0
Merged-chr8-27025188-2	chr8	27024688	27025688	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153592, intron 2 of 11)	intron (NM_153592, intron 2 of 11)	1389.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103249673-2	chr15	103249173	103250173	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302338, intron 2 of 2)	B1_Mus2|SINE|Alu	2003.0	NM_001302338	18022.0	Mm.457989	NM_008685	ENSMUSG00000058794	Nfe2	NF-E2|NF-E2/P45|p45|p45NFE2|p45nf-e2	nuclear factor, erythroid derived 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155672166-2	chr4	155671666	155672666	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-2912.0	NM_001256107	76580.0	Mm.235738	NM_145124	ENSMUSG00000029060	Mib2	2210008I11Rik|Zzank1|skd	mindbomb E3 ubiquitin protein ligase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26894291-2	chr17	26893791	26894791	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22800.0	NM_053173	16580.0	Mm.491138	NM_016761	ENSMUSG00000024301	Kifc5b	Hset|KNSL2|Kifc5a	kinesin family member C5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-103029660-2	chr13	103029160	103030160	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 3 of 28)	intron (NM_175171, intron 3 of 28)	269405.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116740888-2	chr11	116740388	116741388	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-11279.0	NR_003364	193217.0	Mm.100084	NR_003364		BC018473	-	cDNA sequence BC018473	ncRNA	0.0	3.5	0.0	13.5	14.5	6.5
Merged-chr2-30802106-2	chr2	30801606	30802606	+	604.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198000)	promoter-TSS (NM_198000)	-369.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-70798415-2	chr6	70797915	70798915	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTG)n|Simple_repeat|Simple_repeat	-6240.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132039521-2	chr4	132039021	132040021	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	9557.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88219202-2	chr1	88218681	88219681	+	604.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_201410)	TTS (NM_201410)	7222.0	NM_201645	394436.0	Mm.300095	NM_201645	ENSMUSG00000089960	Ugt1a1	Gnt1|UDPGT 1-1|UGT1A01|Udpgt-1a|UgtBr1	UDP glucuronosyltransferase 1 family, polypeptide A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-37302903-3	chr3	37302406	37303406	+	604.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9540.0	NM_145825	207175.0	Mm.344708	NM_145825	ENSMUSG00000045031	Cetn4	-	centrin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89860546-2	chr3	89860046	89861046	+	604.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29176.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33323996-2	chr2	33323496	33324496	+	604.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290570, intron 3 of 16)	intron (NM_001290570, intron 3 of 16)	47498.0	NM_001290570	241308.0	Mm.274249	NM_175211	ENSMUSG00000038831	Ralgps1	5830418G11Rik|AI853783|AI854138|RALGEF2|RALGPS1A|RalGEF 2|mKIAA0351	Ral GEF with PH domain and SH3 binding motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24591376-2	chr5	24590876	24591876	+	604.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030423)	promoter-TSS (NR_030423)	-738.0	NR_030423	735264.0		NR_030423	ENSMUSG00000076387	Mir671	Mirn671|mmu-mir-671	microRNA 671	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80855506-3	chr12	80855010	80856010	+	604.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 3 of 6)	intron (NM_001242419, intron 3 of 6)	64978.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75837809-1	chr18	75837309	75838309	+	604.333313	f1_c57bl6.idr	intron (NM_145356, intron 1 of 4)	intron (NM_145356, intron 1 of 4)	17631.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	13.0	10.0	6.5	2.5	4.0	1.0
Merged-chr11-89006040-4	chr11	89005518	89006518	+	604.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009546, intron 2 of 8)	intron (NM_009546, intron 2 of 8)	6615.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	34.0	32.5	19.5	20.0	31.5	24.0
Merged-chr6-38888198-2	chr6	38887698	38888698	+	604.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12008.0	NM_001294143	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77802360-2	chr18	77801860	77802860	+	604.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 1 of 14)	intron (NM_013831, intron 1 of 14)	-5970.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-52094647-2	chr9	52094133	52095133	+	604.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20990.0	NR_105750	102465150.0		NR_105750	ENSMUSG00000099311	Mir6244	Gm27368|mmu-mir-6244	microRNA 6244	ncRNA	5.5	16.5	14.5	4.0	1.0	6.5
Merged-chr16-94696514-2	chr16	94696014	94697014	+	604.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347731)	TTS (NM_001347731)	85095.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106712591-3	chr1	106712135	106713135	+	604.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177410, exon 1 of 1)	exon (NM_177410, exon 1 of 1)	1655.0	NM_009741	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-119027292-2	chr10	119026792	119027792	+	604.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NR_152787)	TTS (NR_152787)	23207.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr17-73301479-3	chr17	73300972	73301972	+	604.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	97824.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8578416-2	chr19	8577916	8578916	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12838.0	NM_001164634	19879.0	Mm.285294	NM_031194	ENSMUSG00000063796	Slc22a8	Oat3|Roct	solute carrier family 22 (organic anion transporter), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114684637-2	chr5	114684137	114685137	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019821, intron 1 of 4)	intron (NM_019821, intron 1 of 4)	6298.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	0.0	0.0	0.0	1.5	0.0	0.0
Merged-chr5-92012646-2	chr5	92012146	92013146	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016912, intron 12 of 13)	(CA)n|Simple_repeat|Simple_repeat	25173.0	NM_001177577	381651.0	Mm.332494	NM_001177577	ENSMUSG00000096035	Odaph	Gm1045|Gm1045-a|Gm1045-b	odontogenesis associated phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92205457-1	chr5	92204957	92205957	+	604.0	f0_balb.idr	Intergenic	Intergenic	9951.0	NR_033483	57425.0	Mm.2548	NM_020562	ENSMUSG00000029409	U90926	-	cDNA sequence U90926	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113622031-2	chr5	113621531	113622531	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	B2_Mm1t|SINE|B2	21572.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24441545-2	chr2	24441045	24442045	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011040, intron 5 of 11)	intron (NM_011040, intron 5 of 11)	34054.0	NM_011040	18510.0	Mm.2533	NM_011040	ENSMUSG00000026976	Pax8	Pax-8	paired box 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-109954124-1	chr2	109953624	109954624	+	604.0	f0_c57.idr	intron (NM_172671, intron 1 of 17)	intron (NM_172671, intron 1 of 17)	36477.0	NM_172671	107515.0	Mm.277351	NM_172671	ENSMUSG00000050199	Lgr4	9130225G07|A330106J01Rik|A930009A08Rik|Gpr48	leucine-rich repeat-containing G protein-coupled receptor 4	protein-coding	3.0	0.0	0.0	3.0	0.0	1.5
Merged-chr2-30819861-2	chr2	30819361	30820361	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356433, intron 2 of 3)	intron (NM_001356433, intron 2 of 3)	8439.0	NM_133346	72323.0	Mm.27656	NM_133346	ENSMUSG00000039483	Asb6	2510004M11Rik|AA409356	ankyrin repeat and SOCS box-containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54580428-2	chr13	54579928	54580928	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019968, intron 3 of 3)	intron (NM_019968, intron 3 of 3)	5415.0	NM_019968	56795.0	Mm.89484	NM_019968	ENSMUSG00000025870	Arl10	Arl10a|Arm1	ADP-ribosylation factor-like 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124348414-1	chr8	124347914	124348914	+	604.0	f1_c57bl6.idr	Intergenic	Intergenic	85522.0	NM_171824	209966.0	Mm.234233	NM_171824	ENSMUSG00000050751	Pgbd5	2900019M05Rik|AI854313	piggyBac transposable element derived 5	protein-coding	0.0	0.0	4.0	4.0	1.0	7.5
Merged-chr17-27913149-1	chr17	27912649	27913649	+	604.0	f1_balb.idr	intron (NM_181413, intron 1 of 24)	MTD|LTR|ERVL-MaLR	3843.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	25.5	26.5	32.5	11.0	52.0	53.0
Merged-chr9-114405187-2	chr9	114404687	114405687	+	604.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001200002, exon 2 of 2)	exon (NM_001200002, exon 2 of 2)	4092.0	NM_001200002	100504715.0	Mm.290516	NM_001200002	ENSMUSG00000079260	Tmppe	-	transmembrane protein with metallophosphoesterase domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-15288955-2	chr7	15288455	15289455	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99896.0	NM_145708	246792.0	Mm.26391	NM_145708	ENSMUSG00000074369	Obox2	-	oocyte specific homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121358570-1	chr14	121358070	121359070	+	604.0	f0_balb.idr	intron (NM_145465, intron 1 of 10)	intron (NM_145465, intron 1 of 10)	20660.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0.0	0.0	1.0	1.0	0.0	0.0
Merged-chr4-32586756-2	chr4	32586256	32587256	+	604.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001109661)	TTS (NM_001109661)	-15094.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	11.5	8.5	8.5	7.0	12.0	8.0
Merged-chr16-91450332-2	chr16	91449832	91450832	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-14772.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5446256-2	chr11	5445756	5446756	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1409.0	NM_001080924	407821.0	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	0.5	6.0	4.0	1.5	6.5	4.0
Merged-chr5-137291815-1	chr5	137291315	137292315	+	604.0	f1_c57bl6.idr	exon (NM_001290010, exon 3 of 5)	exon (NM_001290010, exon 3 of 5)	-1965.0	NR_106196	102466887.0		NR_106196	ENSMUSG00000099145	Mir8116	Gm27485|mmu-mir-8116	microRNA 8116	ncRNA	3.0	2.0	0.0	2.5	0.0	0.0
Merged-chr10-94562399-2	chr10	94561899	94562899	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359760, intron 1 of 3)	intron (NM_001359760, intron 1 of 3)	11479.0	NM_001359760	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160211305-2	chr2	160210805	160211805	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116189.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-4348934-1	chr5	4348434	4349434	+	604.0	f1_balb.idr	Intergenic	IMPB_01|Satellite|Satellite	156567.0	NM_001042670	208595.0	Mm.129815	NM_001042670	ENSMUSG00000053178	Mterf1b	Gm9897	mitochondrial transcription termination factor 1b	protein-coding	2.0	3.5	0.0	0.0	0.5	0.0
Merged-chr4-40842696-2	chr4	40842196	40843196	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022305, intron 1 of 5)	(CA)n|Simple_repeat|Simple_repeat	7442.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-44760208-1	chr18	44759708	44760708	+	604.0	f1_balb.idr	intron (NM_001085373, intron 1 of 18)	intron (NM_001085373, intron 1 of 18)	51974.0	NM_001085373	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	24.5	66.5	33.0	21.5	61.5	32.5
Merged-chr11-3347322-1	chr11	3346822	3347822	+	604.0	f0_balb.idr	intron (NM_001034030, intron 9 of 11)	intron (NM_001034030, intron 9 of 11)	8819.0	NM_001034030	16886.0	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128752379-2	chr4	128751879	128752879	+	604.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001195130, exon 15 of 15)	3' UTR (NM_001195130, exon 15 of 15)	-6879.0	NM_001009819	215493.0	Mm.300900	NM_001009819	ENSMUSG00000028794	A3galt2	Gm433|iGb3|iGb3S	alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase)	protein-coding	1.5	2.5	3.5	0.0	0.0	2.0
Merged-chr16-33918866-1	chr16	33918366	33919366	+	604.0	f0_balb.idr	intron (NM_001145884, intron 9 of 14)	intron (NM_001145884, intron 9 of 14)	48172.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7875923-2	chr9	7875423	7876423	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-2753.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-53565733-2	chr6	53565233	53566233	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 5 of 10)	PB1|SINE|Alu	-7641.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-67590460-1	chr3	67589960	67590960	+	604.0	f1_c57bl6.idr	intron (NM_025813, intron 6 of 15)	(TCCA)n|Simple_repeat|Simple_repeat	7692.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	9.5	3.0	1.0	1.5	0.0	1.0
Merged-chr2-4648424-2	chr2	4647924	4648924	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026045, intron 1 of 9)	intron (NM_026045, intron 1 of 9)	3711.0	NM_026045	67229.0	Mm.38529	NM_026045	ENSMUSG00000039449	Prpf18	2810441A10Rik	pre-mRNA processing factor 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-63927242-2	chr15	63926742	63927742	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12781.0	NR_029414	74460.0	Mm.390801	NR_029414	ENSMUSG00000100127	Gsdmcl-ps	4933426G20Rik	gasdermin C-like, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53759643-2	chr11	53759143	53760143	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4011.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-37044428-2	chr11	37043928	37044928	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100187.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119295829-2	chr11	119295362	119296362	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138669, intron 3 of 11)	intron (NM_138669, intron 3 of 11)	4181.0	NM_138669	192170.0	Mm.197555	NM_138669	ENSMUSG00000025580	Eif4a3	2400003O03Rik|Ddx48|eIF4A-III|mKIAA0111	eukaryotic translation initiation factor 4A3	protein-coding	0.0	0.0	4.5	0.0	0.0	1.0
Merged-chr9-100452125-2	chr9	100451625	100452625	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	34348.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56581157-2	chr17	56580657	56581657	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029979, intron 2 of 20)	B4A|SINE|B4	3428.0	NM_001029979	224902.0	Mm.214973	NM_001029979	ENSMUSG00000042625	Safb2	AA389433|AI255170|mKIAA0138	scaffold attachment factor B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-21285577-1	chr12	21285077	21286077	+	604.0	f1_c57bl6.idr	promoter-TSS (NM_018813)	promoter-TSS (NM_018813)	707.0	NM_008403	16413.0	Mm.273333	NM_008403	ENSMUSG00000062352	Itgb1bp1	AI449260|AU019480|Icap1	integrin beta 1 binding protein 1	protein-coding	30.5	99.0	93.5	56.0	88.5	92.0
Merged-chr17-26536406-1	chr17	26535906	26536906	+	604.0	f1_c57bl6.idr	Intergenic	Intergenic	-25106.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	182.0	503.5	382.5	179.0	353.5	217.5
Merged-chr5-34519101-2	chr5	34518601	34519601	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-5122.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54166495-1	chr12	54165995	54166995	+	604.0	f1_c57bl6.idr	Intergenic	Intergenic	37379.0	NM_028133	112407.0	Mm.133037	NM_028133	ENSMUSG00000035105	Egln3	2610021G09Rik|AI505553|AI648162|Hif-p4h-3|Phd3|SM-20	egl-9 family hypoxia-inducible factor 3	protein-coding	0.0	3.0	2.0	0.0	1.5	1.0
Merged-chr13-31506593-2	chr13	31506093	31507093	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51577.0	NM_008239	15220.0	Mm.44235	NM_008239	ENSMUSG00000038415	Foxq1	HFH-1|Hfh1|Hfh1l|sa	forkhead box Q1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-8469213-2	chr16	8468713	8469713	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1600.0	NM_146247	239706.0	Mm.214953	NM_146247	ENSMUSG00000039345	Mettl22	-	methyltransferase like 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-108348670-2	chr2	108348170	108349170	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	929620.0	NM_029790	76894.0	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	0.0	1.0	1.0	0.0	0.0	1.5
Merged-chr17-46521200-2	chr17	46520700	46521700	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081335, intron 21 of 40)	intron (NM_001081335, intron 21 of 40)	24411.0	NM_207161	381101.0	Mm.35801	NM_207161	ENSMUSG00000040658	Dnph1	C76683|Rcl	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	protein-coding	6.0	19.5	4.5	6.5	18.5	19.5
Merged-chr19-24965549-2	chr19	24965056	24966056	+	604.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-3940.0	NM_146097	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	32.0	77.5	75.0	36.0	70.5	41.0
Merged-chr1-92753438-3	chr1	92752956	92753956	+	604.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78189.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36943678-2	chr1	36943178	36944178	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4151.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4794699-2	chr19	4794199	4795199	+	604.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290122)	promoter-TSS (NM_001290122)	-690.0	NM_001290123	19653.0	Mm.426069	NM_009032	ENSMUSG00000094936	Rbm4	4921506I22Rik|Lark1|Mlark|Rbm4a|lark	RNA binding motif protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47538330-1	chr19	47537830	47538830	+	604.0	f1_balb.idr	Intergenic	Intergenic	-1211.0	NM_175360	108689.0	Mm.218048	NM_175360	ENSMUSG00000042694	Stn1	0610009H20Rik|2310057J23Rik|AAF-44|AAF44|AI413458|Obfc1|RPA-32	STN1, CST complex subunit	protein-coding	0.0	7.5	3.0	0.0	0.0	2.5
Merged-chr6-145129656-1	chr6	145129156	145130156	+	604.0	f0_balb.idr	intron (NM_008511, intron 1 of 18)	B4|SINE|B4	7917.0	NM_008511	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	5.0	29.0	13.5	11.5	8.0	3.0
Merged-chr13-23411954-2	chr13	23411454	23412454	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11912.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36737722-2	chr18	36737222	36738222	+	604.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028036, exon 4 of 12)	exon (NM_028036, exon 4 of 12)	2652.0	NM_028036	71983.0	Mm.135188	NM_028036	ENSMUSG00000006850	Tmco6	2410015B03Rik	transmembrane and coiled-coil domains 6	protein-coding	1.0	0.0	4.5	0.0	0.5	1.5
Merged-chr11-116053244-2	chr11	116052744	116053744	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172569, intron 8 of 15)	intron (NM_172569, intron 8 of 15)	22928.0	NM_172569	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128733135-2	chr2	128732635	128733635	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 2 of 18)	RLTR17B_Mm|LTR|ERVK	34220.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	4.0	6.5	3.5	1.5	1.5	4.0
Merged-chr11-74652978-2	chr11	74652478	74653478	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081158, intron 1 of 25)	intron (NM_001081158, intron 1 of 25)	3483.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61701727-2	chr9	61701250	61702250	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	212760.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27270874-2	chr2	27270374	27271374	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 24 of 29)	intron (NR_133905, intron 24 of 29)	-23571.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37919228-2	chr19	37918728	37919728	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 43 of 53)	intron (NM_001302140, intron 43 of 53)	124349.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133622664-1	chr4	133622164	133623164	+	604.0	f1_c57bl6.idr	intron (NM_001017968, intron 2 of 7)	intron (NM_001017968, intron 2 of 7)	10765.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	5.5	6.5	7.0	13.0	20.5	24.0
Merged-chr3-89867707-2	chr3	89867207	89868207	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36337.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	14.0	5.5	6.5	11.0	2.5	6.5
Merged-chr2-128721508-1	chr2	128721008	128722008	+	604.0	f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	ORR1D1|LTR|ERVL-MaLR	22593.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	42.5	38.5	56.5	32.5	69.0	21.0
Merged-chr13-113491109-1	chr13	113490609	113491609	+	604.0	f0_c57.idr	intron (NR_045501, intron 1 of 6)	intron (NR_045501, intron 1 of 6)	11735.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96825366-1	chr11	96824866	96825866	+	604.0	f1_balb.idr	intron (NM_008686, intron 2 of 4)	intron (NM_008686, intron 2 of 4)	-1239.0	NM_001130451	18023.0	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	0.0	1.5	0.5	2.0	0.5	1.5
Merged-chr13-89382614-1	chr13	89382114	89383114	+	604.0	f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-158022.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	17.5	5.0	19.5	2.0	2.0	10.5
Merged-chr5-137776635-2	chr5	137776135	137777135	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2269.0	NM_001356989	69871.0	Mm.276058	NM_027242	ENSMUSG00000029725	Ppp1r35	2010007H12Rik|2010011D20Rik|AL024004	protein phosphatase 1, regulatory subunit 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108662318-2	chr6	108661818	108662818	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011498, intron 3 of 4)	intron (NM_011498, intron 3 of 4)	-1384.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0.0	1.0	0.0	0.0	0.0	1.5
Merged-chr4-101158711-2	chr4	101158211	101159211	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 19 of 24)	intron (NM_146145, intron 19 of 24)	89673.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101989477-2	chr15	101988977	101989977	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	14865.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75162822-2	chr11	75162322	75163322	+	604.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001002764, exon 19 of 19)	exon (NM_001002764, exon 19 of 19)	5330.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0.0	4.5	0.0	0.0	2.5	1.0
Merged-chr15-75680762-2	chr15	75680262	75681262	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1962.0	NM_028404	72960.0	Mm.182401	NM_028404	ENSMUSG00000000934	Top1mt	2900052H09Rik	DNA topoisomerase 1, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45813427-3	chr19	45812911	45813911	+	604.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145703, intron 1 of 9)	intron (NM_145703, intron 1 of 9)	-1120.0	NM_001276358	80906.0	Mm.213204	NM_030716	ENSMUSG00000025221	Kcnip2	KChIP2	Kv channel-interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40721722-2	chr19	40721222	40722222	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 3 of 9)	intron (NM_001304721, intron 3 of 9)	61952.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90747685-2	chr2	90747185	90748185	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018828, intron 2 of 16)	intron (NM_018828, intron 2 of 16)	2315.0	NM_018828	55935.0	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95884796-2	chr15	95884296	95885296	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 2 of 19)	intron (NM_175344, intron 2 of 19)	-54724.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59248622-1	chr15	59248122	59249122	+	604.0	f0_balb.idr	Intergenic	Intergenic	-58326.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	2.0	1.0	0.0	0.0	1.5	3.0
Merged-chr1-118759751-2	chr1	118759217	118760217	+	604.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131772.0	NM_023755	81879.0	Mm.24621	NM_023755	ENSMUSG00000026380	Tfcp2l1	1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1	transcription factor CP2-like 1	protein-coding	0.0	1.5	0.0	2.0	0.0	0.0
Merged-chr1-75220301-2	chr1	75219801	75220801	+	604.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001243091, exon 3 of 3)	3' UTR (NM_001243091, exon 3 of 3)	-1007.0	NM_001313724	22145.0	Mm.1155	NM_009447	ENSMUSG00000026202	Tuba4a	M[a]4|Tuba4	tubulin, alpha 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35329131-2	chr2	35328631	35329631	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013515, intron 1 of 6)	intron (NM_013515, intron 1 of 6)	7878.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-16980781-1	chr11	16980281	16981281	+	604.0	f0_balb.idr	intron (NM_019549, intron 9 of 9)	intron (NM_019549, intron 9 of 9)	27937.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	2.0	1.5	4.0	1.0	8.0	1.5
Merged-chr15-38635233-1	chr15	38634733	38635733	+	604.0	f0_balb.idr	Intergenic	Intergenic	-26671.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79693013-2	chr10	79692513	79693513	+	604.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302499)	promoter-TSS (NM_001302499)	-813.0	NM_001302499	16904.0	Mm.378960	NM_008504	ENSMUSG00000054206	Gzmm	Lmet1|MMET-1	granzyme M (lymphocyte met-ase 1)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122417876-2	chr8	122417376	122418376	+	604.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310650)	TTS (NM_001310650)	-4144.0	NM_145834	234836.0	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-45414089-2	chr8	45413589	45414589	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3470.0	NM_126166	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86876741-1	chr4	86876241	86877241	+	604.0	f1_c57bl6.idr	intron (NM_001290543, intron 1 of 5)	B1_Mur1|SINE|Alu	2327.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	3.5	1.5	0.0	15.5	0.0	3.5
Merged-chr4-149047485-2	chr4	149046985	149047985	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019781, intron 2 of 8)	intron (NM_019781, intron 2 of 8)	52327.0	NM_019781	56273.0	Mm.184172	NM_019781	ENSMUSG00000028975	Pex14	Pex14p|R75137	peroxisomal biogenesis factor 14	protein-coding	5.0	1.0	2.0	0.0	4.5	2.5
Merged-chr6-90492139-2	chr6	90491639	90492639	+	603.958374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29563.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-10289874-2	chr3	10289374	10290374	+	603.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_029310, intron 1 of 5)	intron (NM_029310, intron 1 of 5)	11309.0	NM_001357159	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45372406-2	chr13	45371891	45372891	+	603.833374	f0_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-17351.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	11.5	64.5	50.5	43.0	72.0	65.0
Merged-chr7-27199434-2	chr7	27198934	27199934	+	603.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290513, intron 2 of 7)	RLTR11A2|LTR|ERVK	-3163.0	NM_001285825	53607.0	Mm.386890	NM_015782	ENSMUSG00000061479	Snrpa	C430021M15Rik|Rnu1a-1|Rnu1a1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding	5.0	14.5	9.5	4.5	31.0	14.0
Merged-chr1-58697836-2	chr1	58697332	58698332	+	603.833374	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-1843.0	NM_175370	108812.0	Mm.442063	NM_175370	ENSMUSG00000047528	Als2cr12	4933405P16Rik|4933425F06Rik	amyotrophic lateral sclerosis 2 chromosome region 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78416904-2	chr17	78416404	78417404	+	603.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360407, intron 1 of 9)	intron (NM_001360407, intron 1 of 9)	1248.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66706016-3	chr9	66705512	66706512	+	603.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7674.0	NM_178396	76459.0	Mm.277921	NM_178396	ENSMUSG00000032373	Car12	2310047E01Rik|AI314958|CA-XII|Ca12	carbonic anhydrase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135396480-3	chr1	135396011	135397011	+	603.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357578, intron 15 of 24)	intron (NM_001357578, intron 15 of 24)	-21448.0	NM_175259	77552.0	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-12044064-3	chr16	12043549	12044549	+	603.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028277, intron 2 of 4)	URR1B|DNA|hAT-Charlie	59936.0	NM_001174086	72555.0	Mm.310139	NM_028277	ENSMUSG00000022494	Shisa9	2700045P11Rik|Ckamp44	shisa family member 9	protein-coding	4.5	7.5	3.5	11.0	8.5	9.0
Merged-chr11-74647540-2	chr11	74647040	74648040	+	603.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1955.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	9.0	17.5	24.0	10.0	17.5	21.5
Merged-chr12-84189791-2	chr12	84189291	84190291	+	603.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	4224.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-63898877-2	chr3	63898377	63899377	+	603.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	29921.0	NM_001357824	329659.0	Mm.39342	NM_177856	ENSMUSG00000048581	E130311K13Rik	-	RIKEN cDNA E130311K13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40704213-2	chr4	40703713	40704713	+	603.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1019.0	NM_001025445	66408.0	Mm.430710	NM_025545	ENSMUSG00000028411	Aptx	2410016G21Rik|AA388047|FHA-HIT	aprataxin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86507819-1	chr17	86507319	86508319	+	603.666687	f1_balb.idr	intron (NM_011104, intron 10 of 14)	intron (NM_011104, intron 10 of 14)	-220641.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	0.5	16.5	3.5	0.0	1.0	0.0
Merged-chr11-50048320-2	chr11	50047820	50048820	+	603.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 1 of 7)	RSINE1|SINE|B4	-21382.0	NR_029769	723845.0		NR_029769	ENSMUSG00000065417	Mir340	Mirn340|mir-340|mmu-mir-340	microRNA 340	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7728276-2	chr10	7727776	7728776	+	603.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_011835, intron 1 of 10)	intron (NM_011835, intron 1 of 10)	2276.0	NM_011835	23924.0	Mm.28127	NM_011835	ENSMUSG00000019794	Katna1	-	katanin p60 (ATPase-containing) subunit A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106689953-2	chr9	106689453	106690453	+	603.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_030730, exon 22 of 22)	3' UTR (NM_030730, exon 22 of 22)	-4001.0	NM_001286498	21767.0	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	0.0	6.0	3.5	0.0	0.0	2.0
Merged-chr17-12165843-2	chr17	12165343	12166343	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026644, intron 2 of 8)	intron (NM_026644, intron 2 of 8)	46559.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128305910-2	chr10	128305410	128306410	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252327, intron 2 of 25)	PB1D10|SINE|Alu	2575.0	NM_001252326	103135.0	Mm.244183	NM_133992	ENSMUSG00000005682	Pan2	1200014O24Rik|AI047843|AW742773|Usp52|mKIAA0710	PAN2 poly(A) specific ribonuclease subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-90173203-2	chr18	90172703	90173703	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-336951.0	NM_198295	67988.0	Mm.268041	NM_198295	ENSMUSG00000024614	Tmx3	6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830	thioredoxin-related transmembrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111543058-2	chr12	111542558	111543558	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178041, intron 9 of 11)	intron (NM_178041, intron 9 of 11)	2112.0	NR_033168	100316932.0	Mm.484709	NR_033168	ENSMUSG00000064493	Snora28	MBI-13	small nucleolar RNA, H/ACA box 28	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81573630-1	chr7	81573130	81574130	+	603.5	f0_balb.idr	intron (NM_001004185, intron 1 of 9)	intron (NM_001004185, intron 1 of 9)	2338.0	NM_001004185	434204.0	Mm.181641	NM_001004185	ENSMUSG00000045795	Whamm	BB081391|Whdc1|mKIAA1971	WAS protein homolog associated with actin, golgi membranes and microtubules	protein-coding	3.0	18.5	6.0	1.0	0.0	15.0
Merged-chr2-144016384-2	chr2	144015884	144016884	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5121.0	NM_024281	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-150666855-2	chr5	150666355	150667355	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-1243.0	NM_201369	381695.0	Mm.246934	NM_201369	ENSMUSG00000029655	N4bp2l2	2700092H06Rik|Gm38758|zag1	NEDD4 binding protein 2-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5957618-2	chr19	5957118	5958118	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 4 of 17)	B1_Mur3|SINE|Alu	6588.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122149446-2	chr10	122148946	122149946	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29749.0	NR_027637	100043513.0	Mm.429141	NR_027637	ENSMUSG00000111952	Gm4489	Gm241	predicted gene 4489	ncRNA	0.0	0.0	0.0	5.5	0.0	0.0
Merged-chr2-30725806-2	chr2	30725306	30726306	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4596.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7343508-2	chr19	7343008	7344008	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1648.0	NM_001080388	13728.0	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-10013308-2	chr3	10012808	10013808	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001272098, intron 1 of 2)	intron (NM_001272098, intron 1 of 2)	723.0	NM_001272098	16592.0	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	17.5	0.0	1.5	1.5	0.0	2.5
Merged-chr14-64688981-2	chr14	64688481	64689481	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081177, intron 2 of 39)	intron (NM_001081177, intron 2 of 39)	36450.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	0.0	4.5	1.0	0.0	1.5	1.0
Merged-chr10-60691090-1	chr10	60690590	60691590	+	603.5	f0_balb.idr	intron (NM_001252635, intron 1 of 68)	G-rich|Low_complexity|Low_complexity	5400.0	NM_001252635	22295.0	Mm.440327	NM_023370	ENSMUSG00000012819	Cdh23	4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v	cadherin 23 (otocadherin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136890056-2	chr4	136889571	136890571	+	603.5	f0_c57.idr|f1_balb.idr	exon (NM_007574, exon 3 of 3)	exon (NM_007574, exon 3 of 3)	2843.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	121.5	306.5	171.5	64.0	227.5	135.0
Merged-chr2-25048360-2	chr2	25047860	25048860	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146251, intron 26 of 34)	intron (NM_146251, intron 26 of 34)	-6019.0	NM_001177654	56876.0	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-50885731-2	chr15	50885231	50886231	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_032000, intron 1 of 5)	intron (NM_032000, intron 1 of 5)	3318.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-21678708-2	chr17	21678208	21679208	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1169.0	NM_001354753	100310809.0	Mm.293030	NM_001354753		Gm10509	-	predicted gene 10509	protein-coding	11.0	4.5	6.5	1.5	1.0	1.0
Merged-chr4-8765511-2	chr4	8765011	8766011	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 1 of 36)	intron (NM_001355382, intron 1 of 36)	14187.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132527417-2	chr4	132526917	132527917	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7997.0	NM_007512	11983.0	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60600376-2	chr13	60599876	60600876	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1571.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166810943-2	chr2	166810443	166811443	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085495, intron 1 of 38)	intron (NM_001085495, intron 1 of 38)	5362.0	NM_001085495	99371.0	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80056933-2	chr7	80056433	80057433	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	18324.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	15.5	51.5	28.0	20.5	44.5	30.5
Merged-chr8-84012182-2	chr8	84011682	84012682	+	603.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291292)	promoter-TSS (NM_001291292)	-462.0	NM_001291292	70134.0	Mm.41017	NM_001291292	ENSMUSG00000074217	2210011C24Rik	-	RIKEN cDNA 2210011C24 gene	protein-coding	0.0	0.5	0.0	0.0	0.0	3.5
Merged-chr1-86296906-2	chr1	86296406	86297406	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6315.0	NM_145222	227327.0	Mm.86467	NM_145222	ENSMUSG00000079445	B3gnt7	C330001H22Rik|beta-3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20927983-2	chr10	20927483	20928483	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-24564.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-115230741-1	chr13	115230241	115231241	+	603.5	f0_balb.idr	Intergenic	Intergenic	-128777.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40731866-1	chr9	40731366	40732366	+	603.5	f0_balb.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	45902.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	8.5	8.5	6.5	56.0	137.5	93.0
Merged-chr4-3952767-2	chr4	3952267	3953267	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13343.0	NR_104356	66433.0	Mm.27406	NM_181391	ENSMUSG00000042198	Chchd7	1810049H20Rik	coiled-coil-helix-coiled-coil-helix domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-77028742-2	chr16	77028242	77029242	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 1 of 23)	intron (NM_013918, intron 1 of 23)	14673.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119045999-2	chr11	119045499	119046499	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-5086.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-87236488-2	chr12	87235988	87236988	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027744, intron 2 of 7)	intron (NM_027744, intron 2 of 7)	2113.0	NM_027744	71275.0	Mm.79198	NM_027744	ENSMUSG00000072919	Noxred1	4933437F05Rik	NADP+ dependent oxidoreductase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108829371-2	chr9	108828871	108829871	+	603.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001359573, exon 1 of 36)	exon (NM_001359573, exon 1 of 36)	3326.0	NM_001359572	107934.0	Mm.39945	NM_080437	ENSMUSG00000023473	Celsr3	Adgrc3|Fmi1|flamingo|mKIAA0812	cadherin, EGF LAG seven-pass G-type receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83751494-1	chr8	83750994	83751994	+	603.5	f1_c57bl6.idr	Intergenic	Intergenic	-10183.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	4.0	4.0	0.5	0.0	4.5	11.0
Merged-chr2-99204390-2	chr2	99203877	99204877	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	1736720.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100390143-2	chr11	100389643	100390643	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010593, intron 1 of 13)	intron (NM_010593, intron 1 of 13)	7647.0	NM_010593	16480.0	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50773784-2	chr9	50773284	50774284	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-1441.0	NM_133981	102580.0	Mm.160035	NM_133981	ENSMUSG00000032059	Alg9	8230402H15Rik|AI747665|B430313H07Rik|Dibd1	asparagine-linked glycosylation 9 (alpha 1,2 mannosyltransferase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-56614525-1	chr13	56614025	56615025	+	603.5	f0_balb.idr	intron (NR_155548, intron 2 of 16)	(TG)n|Simple_repeat|Simple_repeat	4939.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	6.0	20.5	22.5	6.0	18.5	22.0
Merged-chr4-119223842-2	chr4	119223334	119224334	+	603.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5617.0	NM_029198	75180.0	Mm.179335	NM_029198	ENSMUSG00000028642	Tmem269	4930538K18Rik	transmembrane protein 269	protein-coding	3.5	1.5	1.0	2.0	4.5	7.5
Merged-chr8-3499895-2	chr8	3499395	3500395	+	603.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053177)	promoter-TSS (NM_053177)	-624.0	NM_053177	94178.0	Mm.8356	NM_053177	ENSMUSG00000004567	Mcoln1	2210015I05Rik|TRPML1|mucolipidin	mucolipin 1	protein-coding	0.0	0.0	0.5	2.5	0.0	0.5
Merged-chr13-75822192-2	chr13	75821682	75822682	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A|LTR|ERVK	-17703.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	9.5	9.0	4.5	15.0	3.0	10.0
Merged-chr4-8666259-2	chr4	8665750	8666750	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24156.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45850741-2	chr13	45850241	45851241	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 3 of 6)	intron (NM_001199304, intron 3 of 6)	114250.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76522258-2	chr15	76521758	76522758	+	603.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130893)	promoter-TSS (NM_130893)	-129.0	NM_130893	170729.0	Mm.218747	NM_130893	ENSMUSG00000048385	Scrt1	-	scratch family zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61737627-2	chr14	61737091	61738091	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55218.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	13.5	31.0	28.0	20.5	29.5	28.0
Merged-chr2-103965281-2	chr2	103964781	103965781	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142337, intron 1 of 3)	intron (NM_001142337, intron 1 of 3)	-4276.0	NM_001142336	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-13540492-2	chr17	13539992	13540992	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045436, intron 2 of 4)	intron (NR_045436, intron 2 of 4)	13602.0	NR_045436	72578.0	Mm.46549	NR_045436	ENSMUSG00000038347	2700054A10Rik	-	RIKEN cDNA 2700054A10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53204998-2	chr15	53204498	53205498	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	141185.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69090874-2	chr11	69090374	69091374	+	603.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009497, exon 5 of 5)	3' UTR (NM_009497, exon 5 of 5)	2346.0	NM_009497	22318.0	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|Vamp-2|sybII	vesicle-associated membrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61394904-2	chr10	61394404	61395404	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11381.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10774853-2	chr16	10774369	10775369	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10667.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33562057-2	chr17	33561563	33562563	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053214, intron 1 of 27)	intron (NM_053214, intron 1 of 27)	6356.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	48.0	69.0	68.5	66.0	58.5	70.5
Merged-chr1-60043349-2	chr1	60042849	60043849	+	603.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316694)	promoter-TSS (NM_001316694)	-227.0	NM_001316695	70375.0	Mm.17834	NM_027407	ENSMUSG00000026018	Ica1l	1700030B17Rik|Als2cr15|b2b3465Clo	islet cell autoantigen 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120865552-2	chr5	120865008	120866008	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145228, intron 2 of 5)	intron (NM_145228, intron 2 of 5)	4086.0	NM_145228	246729.0	Mm.115351	NM_145228	ENSMUSG00000001168	Oas1h	-	2'-5' oligoadenylate synthetase 1H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-85061146-2	chr2	85060646	85061646	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081260, intron 5 of 11)	intron (NM_001081260, intron 5 of 11)	10686.0	NM_001081260	228140.0	Mm.23606	NM_001081260	ENSMUSG00000033955	Tnks1bp1	Tab182|mKIAA1741	tankyrase 1 binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25499843-2	chr2	25499343	25500343	+	603.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013908)	promoter-TSS (NM_013908)	663.0	NM_027062	69379.0	Mm.24596	NM_027062	ENSMUSG00000015083	C8g	-	complement component 8, gamma polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116166014-2	chr9	116165514	116166514	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009371, intron 1 of 7)	intron (NM_009371, intron 1 of 7)	9349.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	11.5	10.0	25.5	17.0	12.0	8.0
Merged-chr7-43605193-2	chr7	43604693	43605693	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-1976.0	NM_001355131	74400.0	Mm.159188	NM_028913	ENSMUSG00000055102	Zfp819	4930427I11Rik|4933405K07Rik	zinc finger protein 819	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79319983-2	chr12	79319483	79320483	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 5 of 10)	intron (NM_009014, intron 5 of 10)	22632.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	8.0	13.0	16.0	18.5	10.5	13.0
Merged-chr18-80155099-2	chr18	80154599	80155599	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1-int|LTR|ERVL-MaLR	-3617.0	NM_175028	240442.0	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120361995-2	chr11	120361495	120362495	+	603.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172802, exon 1 of 5)	exon (NM_172802, exon 1 of 5)	461.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102827228-2	chr14	102826728	102827728	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	155404.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69755425-2	chr11	69754925	69755925	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291068, intron 1 of 28)	intron (NM_001291068, intron 1 of 28)	3208.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5557412-2	chr18	5556912	5557912	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033552, intron 3 of 6)	L1_Mur3|LINE|L1	-34448.0	NM_011546	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166726605-2	chr2	166726105	166727105	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-12773.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63094463-2	chr9	63093963	63094963	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	52517.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88246142-2	chr1	88245669	88246669	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 24 of 41)	intron (NM_001281466, intron 24 of 41)	19149.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-149222408-2	chr5	149221908	149222908	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37848.0	NM_001359957	231915.0	Mm.29402	NM_001013378	ENSMUSG00000041264	Uspl1	E430026A01Rik	ubiquitin specific peptidase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-10586737-2	chr3	10586237	10587237	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A|LTR|ERVK	-146607.0	NM_001127191	74718.0	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171594319-2	chr1	171593819	171594819	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277968, intron 6 of 8)	intron (NM_001277968, intron 6 of 8)	13015.0	NR_102726	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	4.0	5.5	0.5	0.0	0.0	3.0
Merged-chr11-76916716-1	chr11	76916216	76917216	+	603.5	f0_balb.idr	TTS (NM_025655)	TTS (NM_025655)	12171.0	NM_025655	66601.0	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	0.0	0.0	0.0	0.0	4.0	0.0
Merged-chr2-77271179-2	chr2	77270679	77271679	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175465, intron 1 of 17)	MT2A|LTR|ERVL	9413.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142482575-2	chr5	142482075	142483075	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18644.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70107650-2	chr8	70107150	70108150	+	603.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_007789, exon 8 of 15)	exon (NM_007789, exon 8 of 15)	-5064.0	NR_106033	102465646.0		NR_106033	ENSMUSG00000099042	Mir7066	Gm27290|mmu-mir-7066	microRNA 7066	ncRNA	0.0	2.5	1.5	0.0	5.5	2.5
Merged-chr2-32609627-2	chr2	32609127	32610127	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025310, intron 2 of 5)	intron (NM_001025310, intron 2 of 5)	2642.0	NR_110347	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-49430625-2	chr17	49430125	49431125	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020042, intron 1 of 10)	intron (NM_020042, intron 1 of 10)	2261.0	NM_020042	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	1.5	0.5	1.0	1.5	0.0	1.0
Merged-chr2-33088452-2	chr2	33087952	33088952	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355201, intron 2 of 29)	MLT1J2|LTR|ERVL-MaLR	-1199.0	NM_178888	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94468201-2	chr13	94467701	94468701	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009680, intron 15 of 26)	ID4|SINE|ID	109241.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11388237-2	chr16	11387737	11388737	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 4 of 20)	intron (NM_028964, intron 4 of 20)	-17411.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130062246-2	chr5	130061746	130062746	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-11080.0	NM_013837	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	9.5	7.5	3.5	7.5	1.0	4.0
Merged-chr13-35955522-1	chr13	35955022	35956022	+	603.5	f1_balb.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-12384.0	NM_029628	76487.0	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	30.0	26.5	28.0	72.0	76.0	57.5
Merged-chr9-62351410-2	chr9	62350910	62351910	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 1 of 6)	intron (NM_009672, intron 1 of 6)	10067.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97356992-2	chr6	97356492	97357492	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	intron (NM_145148, intron 6 of 23)	102294.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163685955-2	chr2	163685455	163686455	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 2 of 4)	intron (NM_001039390, intron 2 of 4)	-8082.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104509982-2	chr8	104509602	104510602	+	603.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_180958)	promoter-TSS (NM_180958)	-215.0	NM_180958	320022.0	Mm.249775	NM_180958	ENSMUSG00000052616	Terb1	4930532D21Rik|BB085179|Ccdc79	telomere repeat binding bouquet formation protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182755189-2	chr1	182754689	182755689	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6009.0	NM_001033547	433386.0	Mm.338103	NM_001033547	ENSMUSG00000043429	Ccdc185	4922505E12Rik	coiled-coil domain containing 185	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-103353420-2	chr12	103352920	103353920	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 1 of 9)	intron (NM_023049, intron 1 of 9)	2581.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139282257-2	chr4	139281757	139282757	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 6 of 9)	intron (NM_001037761, intron 6 of 9)	28451.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	0.0	1.5	0.0	6.0	2.5	0.5
Merged-chr5-111119975-3	chr5	111119459	111120459	+	603.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	115815.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	0.0	0.0	0.0	0.5	0.0	2.0
Merged-chr14-31168615-2	chr14	31168115	31169115	+	603.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138672)	promoter-TSS (NM_138672)	26.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-169459675-3	chr1	169459172	169460172	+	603.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71792.0	NM_023284	66977.0	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32167169-3	chr2	32166657	32167657	+	603.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172661, intron 1 of 29)	intron (NM_172661, intron 1 of 29)	16009.0	NM_001159634	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52644514-2	chr13	52644014	52645014	+	603.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 13 of 13)	intron (NM_011518, intron 13 of 13)	47632.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181598419-2	chr2	181597919	181598919	+	603.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172676, intron 1 of 4)	intron (NM_172676, intron 1 of 4)	728.0	NM_172676	229011.0	Mm.205422	NM_172676	ENSMUSG00000038605	Samd10	D930033N23Rik|E130318E08	sterile alpha motif domain containing 10	protein-coding	0.0	2.0	1.5	0.0	0.5	0.5
Merged-chr1-34579682-2	chr1	34579183	34580183	+	603.25	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_213727)	promoter-TSS (NM_213727)	-10.0	NM_213727	211383.0	Mm.330696	NM_213727	ENSMUSG00000045174	Amer3	9430069J07Rik|Fam123c	APC membrane recruitment 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89407437-2	chr6	89406937	89407937	+	603.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 5 of 6)	intron (NM_001167736, intron 5 of 6)	-44824.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80761418-2	chr17	80760910	80761910	+	603.208374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-33385.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60732162-3	chr18	60731628	60732628	+	603.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	L2b|LINE|L2	1013.0	NM_001348102	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	24.5	41.5	32.0	28.5	57.5	30.0
Merged-chr1-165576162-2	chr1	165575662	165576662	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357427, intron 33 of 33)	intron (NM_001357427, intron 33 of 33)	58379.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-137968999-2	chr3	137968446	137969446	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 1 of 8)	intron (NM_011932, intron 1 of 8)	12603.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	2.5	4.5	8.0	1.5	4.5	9.0
Merged-chr5-105623793-2	chr5	105623293	105624293	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-76176.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131088842-1	chr1	131088342	131089342	+	603.0	f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	9001.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	12.5	14.5	4.5	12.5	20.0	16.5
Merged-chr2-49727868-1	chr2	49727368	49728368	+	603.0	f0_balb.idr	intron (NM_008449, intron 12 of 25)	intron (NM_008449, intron 12 of 25)	-59818.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111419464-2	chr12	111418964	111419964	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289487, intron 2 of 13)	intron (NM_001289487, intron 2 of 13)	2019.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116458392-2	chr7	116457892	116458892	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-14934.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88640236-2	chr6	88639736	88640736	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12788.0	NM_001278671	74589.0	Mm.196226	NM_029013	ENSMUSG00000033182	Kbtbd12	4833415F11Rik|4933428M03Rik|Klhdc6	kelch repeat and BTB (POZ) domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135693686-1	chr5	135693186	135694186	+	603.0	f1_balb.idr	intron (NM_008898, intron 1 of 15)	intron (NM_008898, intron 1 of 15)	4541.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	2.5	3.0	2.5	0.0	1.5	1.0
Merged-chr11-97959161-1	chr11	97958661	97959661	+	603.0	f1_balb.idr	intron (NM_001163608, intron 2 of 13)	MLT1C|LTR|ERVL-MaLR	27285.0	NM_028199	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	0.0	0.0	0.5	1.0	0.0	2.5
Merged-chr13-114459021-2	chr13	114458463	114459463	+	603.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001301373)	promoter-TSS (NM_001301373)	-12.0	NM_008046	14313.0	Mm.4913	NM_008046	ENSMUSG00000021765	Fst	AL033346|FS	follistatin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23522817-2	chr13	23522317	23523317	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-8227.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49323188-2	chr13	49322688	49323688	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13980.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102149352-1	chr7	102148852	102149852	+	603.0	f1_balb.idr	intron (NM_001287167, intron 18 of 19)	B1_Mus1|SINE|Alu	-32639.0	NM_001081424	504186.0	Mm.334074	NM_001081424	ENSMUSG00000066279	Chrna10	-	cholinergic receptor, nicotinic, alpha polypeptide 10	protein-coding	0.0	3.0	1.0	4.5	0.0	1.0
Merged-chr2-166576351-2	chr2	166575851	166576851	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 31 of 39)	intron (NM_177782, intron 31 of 39)	11829.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-72995408-2	chr16	72994908	72995908	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019413, intron 19 of 28)	intron (NM_019413, intron 19 of 28)	332259.0	NM_019413	19876.0	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57993353-2	chr15	57992853	57993853	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173862, intron 2 of 3)	intron (NM_173862, intron 2 of 3)	7450.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99484325-2	chr10	99483825	99484825	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124846.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-32704273-1	chr3	32703773	32704773	+	603.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4273.0	NM_019673	56456.0	Mm.41077	NM_019673	ENSMUSG00000027671	Actl6a	2810432C06Rik|AI851094|ARP4|Actl6|Baf53a|C79802	actin-like 6A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31157607-2	chr14	31157107	31158107	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138672, intron 19 of 68)	intron (NM_138672, intron 19 of 68)	11034.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36636154-2	chr16	36635654	36636654	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	29923.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81486425-2	chr10	81485925	81486925	+	603.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_134009)	TTS (NM_134009)	-3716.0	NM_001311124	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116827491-2	chr11	116826991	116827991	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347633, intron 1 of 4)	intron (NM_001347633, intron 1 of 4)	555.0	NM_026280	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	0.0	2.5	0.0	2.0	16.5	4.5
Merged-chr19-11608428-1	chr19	11607928	11608928	+	603.0	f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-3624.0	NM_026835	68774.0	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	1.0	8.5	6.5	27.0	6.5	4.0
Merged-chr19-43615260-2	chr19	43614769	43615769	+	603.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008699, exon 2 of 2)	3' UTR (NM_008699, exon 2 of 2)	2944.0	NM_008699	18089.0	Mm.56994	NM_008699	ENSMUSG00000044220	Nkx2-3	Nkx-2.3|Nkx2.3|tinman	NK2 homeobox 3	protein-coding	0.0	5.5	0.0	0.0	0.0	1.5
Merged-chr18-36350117-2	chr18	36349617	36350617	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081365, intron 1 of 2)	ID_B1|SINE|B4	1493.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46134721-2	chr19	46134221	46135221	+	603.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008852)	TTS (NM_008852)	2822.0	NM_007703	12686.0	Mm.21806	NM_007703	ENSMUSG00000038754	Elovl3	CIN-2|Cig30	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80329093-2	chr12	80328593	80329593	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	62584.0	NR_037207	100526530.0		NR_037207	ENSMUSG00000105972	Mir1843a	Mir1843|mir-1843a|mmu-mir-1843|mmu-mir-1843a	microRNA 1843a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117242978-1	chr11	117242478	117243478	+	603.0	f0_balb.idr	intron (NM_001113486, intron 2 of 11)	intron (NM_001113486, intron 2 of 11)	-23268.0	NM_001113487	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-12985064-1	chr7	12984564	12985564	+	603.0	f1_c57bl6.idr	3' UTR (NM_001168561, exon 5 of 5)	3' UTR (NM_001168561, exon 5 of 5)	7216.0	NM_001168561	269870.0	Mm.62083	NM_175558	ENSMUSG00000033961	Zfp446	A630035I11Rik|A930031C22|AA120513|AV306632	zinc finger protein 446	protein-coding	4.0	0.0	5.0	1.0	0.0	0.5
Merged-chr12-69157098-2	chr12	69156598	69157598	+	603.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009093)	TTS (NM_009093)	2088.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	14.5	41.0	32.0	14.5	44.5	28.5
Merged-chr7-101317011-2	chr7	101316511	101317511	+	603.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360460)	promoter-TSS (NM_001360460)	-75.0	NM_001360460	56018.0	Mm.28896	NM_019990	ENSMUSG00000030688	Stard10	AV048538|CGI-52|NY-C0-28|PC-TP2|PCTP2|Pctpl|Sdccag28|SdccagG28|TISP-81	START domain containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4552866-2	chr2	4552366	4553366	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 11 of 23)	(TAAA)n|Simple_repeat|Simple_repeat	-6888.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120568837-2	chr5	120568337	120569337	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145853, intron 2 of 27)	intron (NM_145853, intron 2 of 27)	19776.0	NM_145853	252972.0	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113012189-1	chr5	113011689	113012689	+	603.0	f0_balb.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	3349.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94713637-1	chr13	94713137	94714137	+	603.0	f0_balb.idr	Intergenic	Intergenic	-75306.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122988556-2	chr5	122988065	122989065	+	603.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045820)	promoter-TSS (NR_045820)	534.0	NM_001003953	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	54.5	53.5	51.0	22.5	87.5	61.5
Merged-chr4-130818119-2	chr4	130817619	130818619	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 2 of 4)	intron (NM_011520, intron 2 of 4)	25582.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84826665-1	chr3	84826165	84827165	+	603.0	f1_c57bl6.idr	intron (NM_001177773, intron 1 of 13)	intron (NM_001177773, intron 1 of 13)	11088.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	7.0	13.0	5.5	8.5	6.5	7.5
Merged-chr17-87986384-2	chr17	87985884	87986884	+	603.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010830, exon 4 of 10)	exon (NM_010830, exon 4 of 10)	11334.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-142758394-2	chr6	142757894	142758894	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009908, intron 1 of 7)	B4|SINE|B4	1708.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-36770350-1	chr9	36769850	36770850	+	603.0	f1_balb.idr	Intergenic	B1_Mm|SINE|Alu	-2772.0	NM_008408	16430.0	Mm.2863	NM_008408	ENSMUSG00000032116	Stt3a	AA408947|BB081708|Itm1	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	protein-coding	5.0	1.0	0.0	8.0	0.0	0.0
Merged-chr15-25553690-2	chr15	25553190	25554190	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68860.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-143975005-1	chr2	143974505	143975505	+	603.0	f1_c57bl6.idr	intron (NM_024281, intron 2 of 23)	B2_Mm2|SINE|B2	36258.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136720418-1	chr6	136719918	136720918	+	603.0	f1_balb.idr	intron (NM_145067, intron 17 of 25)	ID_B1|SINE|B4	-58525.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	3.0	4.0	1.0	2.5	3.0	2.0
Merged-chr12-116086097-2	chr12	116085597	116086597	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009511, intron 2 of 12)	intron (NM_009511, intron 2 of 12)	8371.0	NM_009511	22355.0	Mm.395245	NM_009511	ENSMUSG00000011171	Vipr2	VPAC2|VPAC2R|Vip2	vasoactive intestinal peptide receptor 2	protein-coding	0.0	2.0	0.0	0.0	10.0	1.5
Merged-chr13-93230344-1	chr13	93229844	93230844	+	603.0	f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-37927.0	NM_001361537	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	39.0	76.5	41.0	29.0	40.0	41.5
Merged-chr14-10392302-3	chr14	10391811	10392811	+	603.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 5 of 9)	Lx5|LINE|L1	61147.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52927837-2	chr13	52927343	52928343	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016709, intron 1 of 9)	intron (NM_016709, intron 1 of 9)	1834.0	NM_016709	11992.0	Mm.252034	NM_016709	ENSMUSG00000021460	Auh	C77140|W91705	AU RNA binding protein/enoyl-coenzyme A hydratase	protein-coding	0.0	2.5	0.5	0.0	0.0	2.5
Merged-chr10-75215864-2	chr10	75215364	75216364	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145826, intron 1 of 18)	intron (NM_001145826, intron 1 of 18)	3474.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101842715-2	chr5	101842215	101843215	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 66 of 66)	intron (NM_172882, intron 66 of 66)	77585.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr13-54375972-2	chr13	54375472	54376472	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009946, intron 1 of 3)	intron (NM_009946, intron 1 of 3)	4623.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182020525-2	chr1	182020025	182021025	+	603.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010135)	promoter-TSS (NM_010135)	-545.0	NM_001083120	13800.0	Mm.87759	NM_008680	ENSMUSG00000022995	Enah	Mena|NDPP-1|Ndpp1|WBP8	ENAH actin regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-33730213-2	chr8	33729710	33730710	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-1704.0	NM_001167921	68153.0	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding	3.5	10.5	11.5	18.5	15.0	1.0
Merged-chr10-81465632-2	chr10	81465132	81466132	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176954, intron 9 of 11)	intron (NM_176954, intron 9 of 11)	7499.0	NM_001311127	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96564419-1	chr3	96563919	96564919	+	603.0	f0_balb.idr	intron (NR_040409, intron 1 of 3)	intron (NR_040409, intron 1 of 3)	2382.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	7.5	17.5	23.0	8.5	9.5	9.0
Merged-chr6-115883107-2	chr6	115882607	115883607	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167763, intron 7 of 28)	intron (NM_001167763, intron 7 of 28)	29579.0	NM_031177	81896.0	Mm.333335	NM_031177	ENSMUSG00000030323	Ift122	C86139|Wdr10|sopb	intraflagellar transport 122	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5740781-2	chr17	5740281	5741281	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 8 of 8)	intron (NM_146073, intron 8 of 8)	-57876.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-10234313-2	chr1	10233813	10234813	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-1643.0	NM_001102430	211673.0	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-114817518-2	chr13	114817018	114818018	+	603.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013826)	promoter-TSS (NM_013826)	-719.0	NM_013826	17434.0	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88041364-1	chr6	88040864	88041864	+	603.0	f0_balb.idr	intron (NM_001293652, intron 1 of 7)	intron (NM_001293652, intron 1 of 7)	3653.0	NM_001293653	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101992566-2	chr5	101992054	101993054	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	YREP_Mm|Unknown|Unknown	77367.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	19.0	33.5	29.0	9.5	24.0	31.5
Merged-chr7-98838320-2	chr7	98837820	98838820	+	603.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285795)	promoter-TSS (NM_001285795)	-525.0	NM_009519	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.0	3.5	0.0	0.5	0.0	2.5
Merged-chr2-10825701-1	chr2	10825201	10826201	+	603.0	f0_balb.idr	Intergenic	Intergenic	307546.0	NR_035418	100316831.0		NR_035418	ENSMUSG00000080594	Mir669h	Mirn669h|mir-669h|mmu-mir-669h	microRNA 669h	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64919111-2	chr1	64918611	64919611	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 3 of 7)	intron (NM_001039493, intron 3 of 7)	37713.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24595624-1	chr10	24595124	24596124	+	603.0	f0_balb.idr	5' UTR (NM_010217, exon 1 of 5)	5' UTR (NM_010217, exon 1 of 5)	182.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	1.5	0.0	2.5	0.0	0.0	1.0
Merged-chr11-79340629-2	chr11	79340129	79341129	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010897, intron 1 of 57)	intron (NM_010897, intron 1 of 57)	737.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	0.0	2.5	1.5	0.0	2.5	2.0
Merged-chr8-69273276-1	chr8	69272776	69273776	+	603.0	f0_balb.idr	intron (NM_172491, intron 1 of 5)	intron (NM_172491, intron 1 of 5)	2196.0	NM_172491	211135.0	Mm.294970	NM_172491	ENSMUSG00000079038	D130040H23Rik	-	RIKEN cDNA D130040H23 gene	protein-coding	6.5	22.5	5.5	49.5	22.0	30.5
Merged-chr4-136034679-2	chr4	136034164	136035164	+	603.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13015.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	31.0	43.5	25.5	35.0	46.5	53.5
Merged-chr18-60212591-2	chr18	60212091	60213091	+	603.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033767, exon 2 of 3)	5' UTR (NM_001033767, exon 2 of 3)	514.0	NM_001033767	240327.0	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-74412074-1	chr16	74411574	74412574	+	603.0	f1_balb.idr	promoter-TSS (NM_175549)	promoter-TSS (NM_175549)	-249.0	NM_175549	268902.0	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.0	7.0	0.0	0.0	5.5	0.0
Merged-chr2-160716015-2	chr2	160715515	160716515	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009408, intron 17 of 20)	intron (NM_009408, intron 17 of 20)	-15295.0	NM_021280	18803.0	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136200390-2	chr5	136199890	136200890	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1436.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35694471-1	chr12	35693971	35694971	+	603.0	f1_balb.idr	intron (NR_045050, intron 2 of 4)	MLT1J|LTR|ERVL-MaLR	647.0	NR_045050	71581.0	Mm.100110	NR_045050	ENSMUSG00000113985	9130015A21Rik	100043575|Gm4527	RIKEN cDNA 9130015A21 gene	ncRNA	1.5	9.0	0.0	0.0	4.5	7.0
Merged-chr14-79480346-2	chr14	79479846	79480846	+	603.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007920)	promoter-TSS (NM_007920)	-848.0	NM_007920	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128204935-2	chr7	128204435	128205435	+	603.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009943)	TTS (NM_009943)	1431.0	NM_009943	12862.0	Mm.43824	NM_009943	ENSMUSG00000030785	Cox6a2	CoxVIaH|VIaH	cytochrome c oxidase subunit VIa polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-25100347-1	chr5	25099847	25100847	+	603.0	f0_balb.idr	promoter-TSS (NR_027851)	promoter-TSS (NR_027851)	295.0	NM_145401	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63850554-2	chr9	63850054	63851054	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92560.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-54746114-1	chr3	54745614	54746614	+	603.0	f1_c57bl6.idr	intron (NM_025442, intron 7 of 9)	intron (NM_025442, intron 7 of 9)	-9468.0	NM_019483	55994.0	Mm.244353	NM_019483	ENSMUSG00000027796	Smad9	MADH6|Madh8|Madh9|Smad8	SMAD family member 9	protein-coding	0.0	0.0	0.0	5.5	0.0	2.0
Merged-chr16-71793491-2	chr16	71792991	71793991	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A2|LTR|ERVK	440836.0	NR_131116	319533.0	Mm.373754	NR_131115		8030451O07Rik	-	RIKEN cDNA 8030451O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34369023-1	chr5	34368523	34369523	+	603.0	f1_c57bl6.idr	promoter-TSS (NM_001243123)	promoter-TSS (NM_001243123)	-910.0	NM_001243123	231128.0	Mm.286885	NM_001030306	ENSMUSG00000037210	Fam193a	-	family with sequence similarity 193, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84743733-2	chr8	84743231	84744231	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081982, intron 2 of 9)	intron (NM_001081982, intron 2 of 9)	30638.0	NM_001081981	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	0.0	3.0	2.0	0.5	0.0	0.5
Merged-chr19-55793112-2	chr19	55792612	55793612	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	51302.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	5.0	5.5	2.5	0.0	12.0	0.5
Merged-chr14-58123080-1	chr14	58122580	58123580	+	603.0	f0_balb.idr	Intergenic	L1M4|LINE|L1	50394.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128831122-2	chr8	128830622	128831622	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	145468.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-80397579-2	chr1	80397079	80398079	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48353.0	NR_040460	72208.0	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan	RIKEN cDNA 1700016L21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35026032-1	chr9	35025532	35026532	+	603.0	f1_balb.idr	intron (NM_001190912, intron 12 of 15)	intron (NM_001190912, intron 12 of 15)	-90696.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	3.0	0.0	1.0	0.0	0.0	0.5
Merged-chr7-102266156-2	chr7	102265656	102266656	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1668.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	25.0	40.5	40.0	22.5	28.0	30.5
Merged-chr18-46958475-2	chr18	46957975	46958975	+	603.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178377)	promoter-TSS (NM_178377)	-401.0	NM_178377	69456.0	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2|Tg(Vav1-icre)A2Kio|Vav-cre|Vav-iCre|Vav1-Cre|VavCre	COMM domain containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85073457-1	chr8	85072957	85073957	+	603.0	f1_balb.idr	intron (NM_001039514, intron 3 of 8)	intron (NM_001039514, intron 3 of 8)	1700.0	NM_001039514	330817.0	Mm.193086	NM_201408	ENSMUSG00000060038	Dhps	Dhs	deoxyhypusine synthase	protein-coding	4.5	5.0	2.5	0.0	4.0	1.0
Merged-chr1-194943645-2	chr1	194943145	194944145	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111059, intron 1 of 7)	intron (NM_001111059, intron 1 of 7)	4824.0	NM_133654	12490.0	Mm.29798	NM_133654	ENSMUSG00000016494	Cd34	AU040960	CD34 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59036292-2	chr4	59035792	59036792	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025277, intron 1 of 2)	intron (NM_025277, intron 1 of 2)	1136.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	1.0	17.0	16.5	23.5	50.0	17.5
Merged-chr2-72220009-2	chr2	72219509	72220509	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355478, intron 13 of 26)	B3|SINE|B2	-65628.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.5	0.0	0.5	8.0	0.0	2.5
Merged-chr12-112717303-2	chr12	112716803	112717803	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4871.0	NM_001024602	217882.0	Mm.23689	NM_001024602	ENSMUSG00000072825	Cep170b	AI466840|AW555464|Kiaa0284|mKIAA0284	centrosomal protein 170B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54223249-1	chr14	54222749	54223749	+	603.0	f1_c57bl6.idr	Intergenic	Intergenic	30680.0	NM_001113358	13135.0	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	1.0	7.0	0.0	0.0	0.0	2.0
Merged-chr7-102429432-2	chr7	102428932	102429932	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009287, intron 10 of 11)	intron (NM_009287, intron 10 of 11)	-12263.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25864851-1	chr12	25864351	25865351	+	603.0	f1_balb.idr	Intergenic	Intergenic	345654.0	NR_131149	629481.0	Mm.390460	NR_131149	ENSMUSG00000113550	Gm29687	-	predicted gene, 29687	ncRNA	7.5	5.0	0.0	0.0	0.0	1.5
Merged-chr10-83448796-1	chr10	83448296	83449296	+	603.0	f0_balb.idr	Intergenic	Intergenic	85344.0	NM_153543	216188.0	Mm.263138	NM_153543	ENSMUSG00000020256	Aldh1l2	D330038I09Rik|mtFDH	aldehyde dehydrogenase 1 family, member L2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-83860632-1	chr3	83860132	83861132	+	603.0	f1_balb.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-19024.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	1.5	14.5	3.0	5.5	0.0	0.5
Merged-chr17-70973187-1	chr17	70972687	70973687	+	603.0	f1_c57bl6.idr	TTS (NM_023402)	TTS (NM_023402)	17329.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	2.5	3.0	5.0	3.0	19.5	9.5
Merged-chr4-132800677-2	chr4	132800177	132801177	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-4313.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-37999270-2	chr15	37998770	37999770	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112721, intron 36 of 58)	intron (NM_001112721, intron 36 of 58)	-38215.0	NM_199476	382985.0	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131237218-2	chr2	131236718	131237718	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144888, intron 1 of 6)	B3|SINE|B2	3155.0	NM_144888	228607.0	Mm.287226	NM_144888	ENSMUSG00000037523	Mavs	D430028G21Rik|IPS-1|Visa|cardif	mitochondrial antiviral signaling protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60700304-2	chr18	60699798	60700798	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348100, intron 7 of 14)	intron (NM_001348100, intron 7 of 14)	27268.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	1.5	4.0	2.0	8.5	6.0	2.5
Merged-chr8-84420162-1	chr8	84419662	84420662	+	603.0	f1_balb.idr	intron (NM_001252060, intron 1 of 47)	Tigger5b|DNA|TcMar-Tigger	4798.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	8.5	7.0	5.5	76.5	202.5	132.0
Merged-chr4-45587401-3	chr4	45586881	45587881	+	602.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52555.0	NR_151513	100040557.0	Mm.383510	NR_151513	ENSMUSG00000085980	Gm12408	-	predicted gene 12408	ncRNA	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr9-98965704-2	chr9	98965204	98966204	+	602.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10097.0	NM_012020	26927.0	Mm.151239	NM_012020	ENSMUSG00000050397	Foxl2	AU045128|BPES|PINTO|Pfrk	forkhead box L2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161329421-2	chr1	161328935	161329935	+	602.833374	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66003.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	8.0	8.0	13.0	5.0	2.0	1.0
Merged-chr2-27754248-2	chr2	27753748	27754748	+	602.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_011305, exon 7 of 10)	exon (NM_011305, exon 7 of 10)	43665.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56771794-2	chr17	56771294	56772294	+	602.833313	f1_balb.idr|f1_c57bl6.idr	exon (NM_001195673, exon 3 of 3)	exon (NM_001195673, exon 3 of 3)	1518.0	NM_001195673	100504446.0	Mm.46157	NM_001195673	ENSMUSG00000090273	Prr22	Gm546	proline rich 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24539697-2	chr5	24539197	24540197	+	602.833313	f1_balb.idr|f1_c57bl6.idr	exon (NM_001310476, exon 2 of 6)	exon (NM_001310476, exon 2 of 6)	760.0	NM_080444	117590.0	Mm.207071	NM_080444	ENSMUSG00000038204	Asb10	Asb-10|BB137407	ankyrin repeat and SOCS box-containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13010950-2	chr10	13010450	13011450	+	602.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	2500.0	NM_175102	66125.0	Mm.29743	NM_175102	ENSMUSG00000078348	Sf3b5	10kDa|1110005L13Rik|AU043053|Sf3b10	splicing factor 3b, subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90497132-2	chr2	90496631	90497631	+	602.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-17957.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	18.0	7.0	0.0	25.5	7.5
Merged-chr11-70462189-2	chr11	70461689	70462689	+	602.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001348337, exon 4 of 14)	exon (NM_001348337, exon 4 of 14)	-2205.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81555421-2	chr10	81554921	81555921	+	602.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4023.0	NR_074087	14797.0	Mm.180013	NM_010347	ENSMUSG00000054452	Aes	AL024115|Esp1|Grg|Grg-5|Grg5|Tle5	amino-terminal enhancer of split	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86999702-3	chr11	86999194	87000194	+	602.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5932.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-66449796-3	chr17	66449289	66450289	+	602.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001114098)	promoter-TSS (NM_001114098)	-39.0	NM_001114098	68617.0	Mm.33421	NM_172963	ENSMUSG00000052105	Mtcl1	1110012J17Rik|Ccdc165|D130071O13|Kiaa0802|Soga2|mKIAA0802|t8219b25	microtubule crosslinking factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40303658-3	chr4	40303154	40304154	+	602.666687	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9578.0	NR_040663	75819.0	Mm.399244	NR_040663	ENSMUSG00000087137	4930509K18Rik	-	RIKEN cDNA 4930509K18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141338867-2	chr7	141338367	141339367	+	602.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282073)	promoter-TSS (NM_001282073)	-84.0	NM_001282073	54006.0	Mm.28392	NM_016874	ENSMUSG00000058886	Deaf1	AU042387|C230009B13Rik|NUDR	DEAF1, transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-125065193-2	chr4	125064693	125065693	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175223, intron 1 of 5)	intron (NM_175223, intron 1 of 5)	464.0	NM_175223	75563.0	Mm.50304	NM_175223	ENSMUSG00000042707	Dnali1	1700023A09Rik|AW049135	dynein, axonemal, light intermediate polypeptide 1	protein-coding	0.0	0.0	2.5	0.0	1.0	0.0
Merged-chr16-30309613-2	chr16	30309113	30310113	+	602.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008148, exon 2 of 2)	exon (NM_008148, exon 2 of 2)	1168.0	NM_008148	14729.0	Mm.3519	NM_008148	ENSMUSG00000047953	Gp5	GPV	glycoprotein 5 (platelet)	protein-coding	0.0	2.5	0.0	0.0	1.0	0.0
Merged-chr11-68659471-2	chr11	68658971	68659971	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-32444.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-18652766-2	chr15	18652266	18653266	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-166181.0	NM_001316758	320873.0	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30697952-2	chr2	30697452	30698452	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19941.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81301876-2	chr10	81301376	81302376	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	8913.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21917226-2	chr9	21916726	21917726	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031874, intron 1 of 4)	intron (NM_031874, intron 1 of 4)	957.0	NM_031874	19340.0	Mm.260157	NM_031874	ENSMUSG00000019066	Rab3d	C130057E11Rik	RAB3D, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3908776-2	chr12	3908276	3909276	+	602.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001271753, exon 23 of 23)	3' UTR (NM_001271753, exon 23 of 23)	17032.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30908546-2	chr5	30908046	30909046	+	602.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024460)	promoter-TSS (NM_024460)	-758.0	NM_024460	67695.0	Mm.21450	NM_024460	ENSMUSG00000038803	Ost4	2310016E02Rik	oligosaccharyltransferase complex subunit 4 (non-catalytic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120485129-2	chr8	120484629	120485629	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3737.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138737723-2	chr5	138737223	138738223	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-17358.0	NM_030565	80752.0	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143523011-2	chr5	143522511	143523511	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347530, intron 1 of 6)	intron (NM_001347530, intron 1 of 6)	4982.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182911017-2	chr1	182910517	182911517	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43771.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-63240220-2	chr10	63239720	63240720	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3577.0	NM_030114	67345.0	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21747432-2	chr14	21746932	21747932	+	602.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001007268, exon 2 of 8)	exon (NM_001007268, exon 2 of 8)	1190.0	NM_001007268	27389.0	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-58893208-2	chr6	58892708	58893708	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361966, intron 21 of 25)	intron (NM_001361966, intron 21 of 25)	13918.0	NM_021432	58243.0	Mm.389747	NM_021432	ENSMUSG00000055430	Nap1l5	1110020M21Rik	nucleosome assembly protein 1-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81336986-2	chr7	81336486	81337486	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	8248.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-8839028-2	chr5	8838528	8839528	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011075, intron 21 of 27)	intron (NM_011075, intron 21 of 27)	-40505.0	NR_152132	330031.0	Mm.389059	NR_152132		Gm5106	A230021K14|EG330031	predicted gene 5106	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173879026-1	chr1	173878526	173879526	+	602.5	f0_balb.idr	intron (NM_001170853, intron 2 of 9)	intron (NM_001170853, intron 2 of 9)	1161.0	NM_001170853	100040462.0	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	84.5	257.0	105.0	186.0	459.5	235.0
Merged-chr4-43036667-2	chr4	43036167	43037167	+	602.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001253353, exon 3 of 9)	exon (NM_001253353, exon 3 of 9)	3634.0	NM_001253353	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	1.5	1.0	0.0	0.0	6.0	0.5
Merged-chr7-17004657-2	chr7	17004157	17005157	+	602.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011155)	TTS (NM_011155)	10069.0	NM_001101535	434130.0	Mm.459162	NM_001101535	ENSMUSG00000041117	Ccdc8	-	coiled-coil domain containing 8	protein-coding	0.0	0.0	2.5	0.0	0.0	2.5
Merged-chr1-17608124-2	chr1	17607624	17608624	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053191, intron 2 of 5)	intron (NM_053191, intron 2 of 5)	6223.0	NM_053191	94227.0	Mm.442452	NM_053191	ENSMUSG00000067780	Pi15	P24TI|P25TI|PI-15|SugarCrisp	peptidase inhibitor 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36490379-2	chr5	36489879	36490879	+	602.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001113364)	TTS (NM_001113364)	5791.0	NM_025725	66717.0	Mm.42368	NM_025725	ENSMUSG00000050677	Ccdc96	4921513E08Rik	coiled-coil domain containing 96	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167940368-2	chr2	167939868	167940868	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	8041.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115566027-2	chr5	115565527	115566527	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172719, intron 1 of 57)	intron (NM_172719, intron 1 of 57)	764.0	NM_172719	231659.0	Mm.153014	NM_172719	ENSMUSG00000041638	Gcn1l1	4932409G22|AL022764|G431004K08Rik|GCN1L|Gcn1|mKIAA0219	GCN1 general control of amino-acid synthesis 1-like 1 (yeast)	protein-coding	0.5	0.0	1.0	0.0	0.0	0.0
Merged-chr4-73948538-2	chr4	73948038	73949038	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027981, intron 1 of 1)	L1_Mus4|LINE|L1	2308.0	NM_027981	71886.0	Mm.158769	NM_027104	ENSMUSG00000028396	2310002L09Rik	2310003M01Rik|AV083437	RIKEN cDNA 2310002L09 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-66448361-2	chr17	66447861	66448861	+	602.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001114098, exon 1 of 15)	exon (NM_001114098, exon 1 of 15)	1389.0	NM_172963	68617.0	Mm.33421	NM_172963	ENSMUSG00000052105	Mtcl1	1110012J17Rik|Ccdc165|D130071O13|Kiaa0802|Soga2|mKIAA0802|t8219b25	microtubule crosslinking factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-186546560-2	chr1	186546060	186547060	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_131124, intron 1 of 2)	intron (NR_131124, intron 1 of 2)	12121.0	NR_131124	320449.0	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	0.0	1.5	1.5	0.0	1.5	0.0
Merged-chr14-63116070-2	chr14	63115570	63116570	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6392.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-36083421-2	chr4	36082921	36083921	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001165999, intron 5 of 7)	intron (NM_001165999, intron 5 of 7)	-238217.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-10653971-2	chr10	10653471	10654471	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR50B|LTR|ERVK	48026.0	NR_033630	382450.0	Mm.422788	NR_033630	ENSMUSG00000098065	Gm5177	EG382450	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123842897-2	chr9	123842397	123843397	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110253, intron 2 of 17)	B2_Mm1t|SINE|B2	8764.0	NM_148925	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5221871-2	chr17	5221371	5222371	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	196896.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53249115-2	chr15	53248630	53249630	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	MTEa|LTR|ERVL-MaLR	97053.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30797311-2	chr2	30796811	30797811	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_028487, intron 4 of 6)	intron (NR_028487, intron 4 of 6)	4426.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-99525627-2	chr6	99525127	99526127	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4634.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59724020-2	chr15	59723520	59724520	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B3|LTR|ERVL	70939.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-16173417-2	chr4	16172917	16173917	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045765, intron 2 of 6)	intron (NR_045765, intron 2 of 6)	9307.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-8770023-2	chr6	8769523	8770523	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010492, intron 1 of 13)	MIR3|SINE|MIR	8461.0	NM_010492	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-66118843-2	chr2	66118343	66119343	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015736, intron 1 of 10)	intron (NM_015736, intron 1 of 10)	5950.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66107294-2	chr5	66106794	66107794	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-9115.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	34.5	91.0	65.0	25.5	100.0	56.5
Merged-chr17-48293798-2	chr17	48293298	48294298	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6240.0	NM_001033405	328833.0	Mm.329104	NM_001033405	ENSMUSG00000071068	Treml2	AW049306|Gm750|Tlt2	triggering receptor expressed on myeloid cells-like 2	protein-coding	0.0	1.0	1.0	0.0	4.0	0.0
Merged-chr5-120603538-2	chr5	120603038	120604038	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029408, intron 3 of 4)	intron (NM_029408, intron 3 of 4)	9051.0	NM_029096	100764.0	Mm.9654	NM_029096	ENSMUSG00000029600	Rita1	1110008J03Rik|AI853657|C86297|Rita	RBPJ interacting and tubulin associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91742498-2	chr16	91741998	91742998	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	13127.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	1.5	4.5	4.0	0.5	4.0	3.0
Merged-chr9-118796835-2	chr9	118796335	118797335	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 3 of 13)	B4|SINE|B4	85143.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96721442-2	chr10	96720942	96721942	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	104441.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50422097-2	chr11	50421597	50422597	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172557, intron 1 of 17)	intron (NM_172557, intron 1 of 17)	9014.0	NM_172557	216724.0	Mm.390400	NM_172557	ENSMUSG00000020375	Rufy1	3000002E04Rik|Rabip4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-6842382-2	chr16	6841882	6842882	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359730, intron 4 of 15)	intron (NM_001359730, intron 4 of 15)	-196988.0	NM_001359729	268859.0	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	4.5	6.5	1.0	4.5	5.5	1.0
Merged-chr4-91752800-2	chr4	91752300	91753300	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-352816.0	NM_207685	15569.0	Mm.318042	NM_010486	ENSMUSG00000008489	Elavl2	Hub|mel-N1	ELAV like RNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-32963530-2	chr14	32963030	32964030	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146022, intron 57 of 58)	intron (NM_001146022, intron 57 of 58)	-27852.0	NM_001146021	67580.0	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60760952-2	chr13	60760491	60761491	+	602.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001285917, exon 26 of 27)	exon (NM_001285917, exon 26 of 27)	25373.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	2.0	3.0	0.5	2.5	1.0	0.0
Merged-chr7-141356513-2	chr7	141356013	141357013	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133191, intron 9 of 20)	intron (NM_133191, intron 9 of 20)	8597.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44369826-2	chr10	44369326	44370326	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10150.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24971433-2	chr13	24970933	24971933	+	602.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008156, exon 14 of 26)	exon (NM_008156, exon 14 of 26)	28281.0	NM_008156	14756.0	Mm.291831	NM_008156	ENSMUSG00000021340	Gpld1	6330541J12Rik|AW546131	glycosylphosphatidylinositol specific phospholipase D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58248221-2	chr15	58247721	58248721	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33329.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-70536963-2	chr4	70536463	70537463	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2035.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118133692-2	chr11	118133192	118134192	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4473.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100495934-2	chr15	100495434	100496434	+	602.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153407)	promoter-TSS (NM_153407)	-695.0	NM_153407	207785.0	Mm.294969	NM_153407	ENSMUSG00000044636	Csrnp2	CSRNP-2|Csnrp2|taip-12	cysteine-serine-rich nuclear protein 2	protein-coding	8.5	32.0	25.5	7.0	14.5	8.0
Merged-chr11-87747170-2	chr11	87746670	87747670	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9619.0	NM_009296	20922.0	Mm.622	NM_009296	ENSMUSG00000020485	Supt4a	AL022777|Supt4h|Supt4h1|Supt4h1a	suppressor of Ty 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94087423-2	chr16	94086923	94087923	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011377, intron 1 of 10)	intron (NM_011377, intron 1 of 10)	2163.0	NM_011377	20465.0	Mm.4775	NM_011377	ENSMUSG00000062713	Sim2	bHLHe15	single-minded family bHLH transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101266007-2	chr4	101265507	101266507	+	602.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146145)	promoter-TSS (NM_146145)	-725.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-123671395-2	chr14	123670895	123671895	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145467, intron 2 of 10)	L1Md_F3|LINE|L1	11255.0	NM_145467	223272.0	Mm.383176	NM_145467	ENSMUSG00000032925	Itgbl1	B930011D01Rik	integrin, beta-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-30510502-2	chr6	30510002	30511002	+	602.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178625)	promoter-TSS (NM_178625)	653.0	NM_027073	75647.0	Mm.46117	NM_027073	ENSMUSG00000029784	Ssmem1	1700016K02Rik|1700025E21Rik	serine-rich single-pass membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46336684-2	chr17	46336184	46337184	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-8661.0	NM_170680	224814.0	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-77324289-2	chr12	77323789	77324789	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045554, intron 3 of 11)	intron (NR_045554, intron 3 of 11)	-64575.0	NM_001252615	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21961288-2	chr9	21960788	21961788	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010149, intron 4 of 7)	RSINE1|SINE|B4	2288.0	NM_010149	13857.0	Mm.2653	NM_010149	ENSMUSG00000006235	Epor	-	erythropoietin receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76619806-2	chr11	76619306	76620306	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-42067.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44636246-2	chr10	44635746	44636746	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-177498.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102551128-2	chr5	102550628	102551628	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146161, intron 1 of 8)	intron (NM_146161, intron 1 of 8)	69737.0	NM_029270	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31696489-2	chr16	31695989	31696989	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357281, intron 1 of 22)	intron (NM_001357281, intron 1 of 22)	941.0	NM_001357281	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167269977-3	chr2	167269497	167270497	+	602.466675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-29460.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103565374-3	chr2	103564869	103565869	+	602.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178890)	promoter-TSS (NM_178890)	-941.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119378221-2	chr11	119377721	119378721	+	602.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_178743, intron 15 of 16)	ORR1A2|LTR|ERVL-MaLR	-12251.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100507417-2	chr7	100507010	100508010	+	602.349976	f1_balb.idr|f1_c57bl6.idr	exon (NM_153527, exon 4 of 8)	exon (NM_153527, exon 4 of 8)	7305.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	6.0	20.0	12.0	1.5	8.5	5.5
Merged-chr2-52427459-2	chr2	52426959	52427959	+	602.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_146123)	TTS (NM_146123)	-2585.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37590478-3	chr9	37589993	37590993	+	602.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23227.0	NM_011449	20686.0	Mm.8637	NM_011449	ENSMUSG00000001948	Spa17	Sp17	sperm autoantigenic protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80108783-2	chr17	80108283	80109283	+	602.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-18688.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94379324-2	chr8	94378824	94379824	+	602.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7105.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36676597-2	chr18	36676097	36677097	+	602.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_146085, intron 6 of 11)	intron (NM_146085, intron 6 of 11)	-2618.0	NM_001360989	67843.0	Mm.273350	NM_026404	ENSMUSG00000033272	Slc35a4	2610030J16Rik	solute carrier family 35, member A4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55828491-2	chr13	55827991	55828991	+	602.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_011097, exon 2 of 3)	exon (NM_011097, exon 2 of 3)	2934.0	NM_011097	18740.0	Mm.135195	NM_011097	ENSMUSG00000021506	Pitx1	Bft|P-OTX|Potx|Ptx1	paired-like homeodomain transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84423878-2	chr8	84423360	84424360	+	602.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252060, intron 1 of 47)	B4|SINE|B4	8496.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	0.0	12.0	1.5	6.5	31.5	28.5
Merged-chr10-58341884-3	chr10	58341374	58342374	+	602.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026148, intron 1 of 9)	intron (NM_026148, intron 1 of 9)	-10089.0	NM_001359116	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58108413-2	chr15	58107922	58108922	+	602.166626	f0_c57.idr|f1_c57bl6.idr	exon (NM_027435, exon 16 of 28)	exon (NM_027435, exon 16 of 28)	26660.0	NM_027435	70472.0	Mm.221758	NM_027435	ENSMUSG00000022360	Atad2	2610509G12Rik	ATPase family, AAA domain containing 2	protein-coding	6.0	10.5	13.5	11.5	1.5	5.0
Merged-chr2-71387948-2	chr2	71387448	71388448	+	602.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-1312.0	NM_026115	107435.0	Mm.272472	NM_026115	ENSMUSG00000027018	Hat1	2410071B14Rik|AA536933|Hat-1|KAT1	histone aminotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97641962-3	chr11	97641491	97642491	+	602.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-12275.0	NM_175332	103551.0	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	3.0	0.0	5.0	0.5	0.0	0.0
Merged-chr12-112679843-2	chr12	112679343	112680343	+	602.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001100460, exon 2 of 2)	exon (NM_001100460, exon 2 of 2)	1003.0	NM_001100460	382639.0	Mm.11350	NM_001100460	ENSMUSG00000037638	Zbtb42	EG382639|Gm5188|simiRP58	zinc finger and BTB domain containing 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103039379-2	chr14	103038879	103039879	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5576.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-74710254-1	chr5	74709754	74710754	+	602.0	f0_balb.idr	Intergenic	Intergenic	-7351.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	4.5	0.0	0.0	9.0	5.5	1.5
Merged-chr10-128485617-2	chr10	128485117	128486117	+	602.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001114096, exon 26 of 29)	exon (NM_001114096, exon 26 of 29)	7392.0	NM_001317220	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60851620-2	chr18	60851120	60852120	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2656.0	NM_001198984	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71964486-2	chr6	71963986	71964986	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009088, intron 22 of 33)	intron (NM_009088, intron 22 of 33)	55433.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136451356-1	chr4	136450856	136451856	+	602.0	f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	-18405.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	1.5	3.5	3.5	13.0	15.5	14.5
Merged-chr11-79216490-2	chr11	79215990	79216990	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26534.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0.0	0.0	3.0	2.5	4.5	0.0
Merged-chr7-28982687-1	chr7	28982187	28983187	+	602.0	f0_c57.idr	promoter-TSS (NM_001285943)	promoter-TSS (NM_001285943)	-167.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132534445-1	chr4	132533945	132534945	+	602.0	f1_c57bl6.idr	intron (NM_007512, intron 1 of 3)	B1F2|SINE|Alu	969.0	NM_007512	11983.0	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	5.0	11.0	2.5	1.5	18.0	7.5
Merged-chr16-45388457-2	chr16	45387957	45388957	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358443, intron 4 of 4)	intron (NM_001358443, intron 4 of 4)	20596.0	NM_001358443	17470.0	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	6.5	0.0	0.0	6.0	1.5	0.0
Merged-chr8-39640789-1	chr8	39640289	39641289	+	602.0	f0_balb.idr	intron (NM_001113326, intron 1 of 9)	intron (NM_001113326, intron 1 of 9)	1889.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	20.0	14.5	18.5	0.0	13.5	28.5
Merged-chr15-80132668-2	chr15	80132168	80133168	+	602.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025609)	promoter-TSS (NM_025609)	-486.0	NM_025609	66513.0	Mm.288245	NM_025609	ENSMUSG00000022414	Tab1	2310012M03Rik|Map3k7ip1|b2b449Clo	TGF-beta activated kinase 1/MAP3K7 binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13538774-1	chr9	13538274	13539274	+	602.0	f1_c57bl6.idr	Intergenic	Intergenic	-81215.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0.0	2.0	1.5	0.0	0.0	1.0
Merged-chr6-51914005-1	chr6	51913505	51914505	+	602.0	f0_balb.idr	intron (NM_018773, intron 6 of 12)	ORR1F|LTR|ERVL-MaLR	98544.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-46999170-2	chr14	46998670	46999670	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	-2170.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	19.0	22.5	15.0	27.0	51.0	31.5
Merged-chr2-93461434-1	chr2	93460934	93461934	+	602.0	f1_balb.idr	intron (NR_040532, intron 2 of 4)	intron (NR_040532, intron 2 of 4)	417.0	NM_001271461	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0.0	1.0	4.0	6.5	3.5	8.5
Merged-chr11-88987709-1	chr11	88987209	88988209	+	602.0	f1_c57bl6.idr	intron (NM_016706, intron 5 of 6)	intron (NM_016706, intron 5 of 6)	-11694.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	5.0	13.5	4.0	5.0	3.5	1.0
Merged-chr9-88692448-3	chr9	88691953	88692953	+	602.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359992, intron 2 of 2)	intron (NM_001359992, intron 2 of 2)	27134.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136678240-2	chr1	136677740	136678740	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-5156.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8170265-2	chr17	8169765	8170765	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201230, intron 5 of 11)	intron (NM_201230, intron 5 of 11)	4747.0	NM_201230	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	0.0	3.5	0.5	3.0	1.0	0.5
Merged-chr1-82679-1	chr1	82179	83179	+	602.0	f1_c57bl6.idr	Intergenic	Intergenic	3588819.0	NM_001011874	497097.0	Mm.454496	NM_001011874	ENSMUSG00000051951	Xkr4	AY534250|Gm210|XRG4|mKIAA1889	X-linked Kx blood group related 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40781753-1	chr12	40781253	40782253	+	602.0	f0_balb.idr	intron (NM_172803, intron 30 of 52)	intron (NM_172803, intron 30 of 52)	-242337.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-85399273-2	chr9	85398773	85399773	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72123.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	6.5	3.0	2.0	6.0	0.0	1.0
Merged-chr11-105988422-2	chr11	105987922	105988922	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281819, intron 23 of 23)	intron (NM_001281819, intron 23 of 23)	-2728.0	NR_104047	100379610.0	Mm.754	NR_104047	ENSMUSG00000085297	Gm11651	-	predicted gene 11651	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131043976-2	chr2	131043518	131044518	+	602.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136063)	promoter-TSS (NM_001136063)	-930.0	NM_001136063	14588.0	Mm.198399	NM_020014	ENSMUSG00000027316	Gfra4	AW060733|G630015H18Rik	glial cell line derived neurotrophic factor family receptor alpha 4	protein-coding	5.0	0.0	3.5	0.0	6.0	5.5
Merged-chr6-72104956-2	chr6	72104456	72105456	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	B4A|SINE|B4	7348.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-110561845-2	chr6	110561345	110562345	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-83667.0	NM_001346640	108073.0	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-14347565-2	chr16	14347065	14348065	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR33|LTR|ERVK	-13993.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115713623-2	chr8	115713123	115714123	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6729.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10306741-2	chr19	10306241	10307241	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	-1864.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	0.0	0.0	1.5	0.0	0.0	1.0
Merged-chr5-21790953-2	chr5	21790453	21791453	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011188, intron 2 of 12)	B1_Mur3|SINE|Alu	5670.0	NM_011188	19181.0	Mm.2462	NM_011188	ENSMUSG00000028932	Psmc2	-	proteasome (prosome, macropain) 26S subunit, ATPase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-69510957-1	chr18	69510457	69511457	+	602.0	f0_balb.idr	intron (NM_001361128, intron 5 of 19)	intron (NM_001361128, intron 5 of 19)	164797.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27364645-1	chr7	27364145	27365145	+	602.0	f1_balb.idr	exon (NM_032610, exon 31 of 36)	exon (NM_032610, exon 31 of 36)	-8637.0	NM_138676	192192.0	Mm.21297	NM_138676	ENSMUSG00000089832	Shkbp1	B930062H15Rik|Sb1	Sh3kbp1 binding protein 1	protein-coding	0.0	0.0	6.5	0.0	0.0	0.5
Merged-chr2-5716098-2	chr2	5715598	5716598	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1336.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4082344-2	chr18	4081844	4082844	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83488.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-15145669-2	chr19	15145169	15146169	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-547486.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53333297-2	chr19	53332797	53333797	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008543, intron 2 of 5)	intron (NM_001008543, intron 2 of 5)	2889.0	NM_001008543	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135747570-2	chr1	135747070	135748070	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360782, intron 4 of 5)	B2_Mm2|SINE|B2	18403.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46305549-1	chr4	46305049	46306049	+	602.0	f0_balb.idr	Intergenic	Intergenic	-38645.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90902728-1	chr5	90902228	90903228	+	602.0	f1_balb.idr	Intergenic	Intergenic	-1171.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	8.5	9.5	16.0	8.0	6.5	12.0
Merged-chr12-85351170-2	chr12	85350670	85351670	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 2 of 4)	intron (NM_026775, intron 2 of 4)	-11808.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-6384146-1	chr7	6383646	6384646	+	602.0	f0_balb.idr	intron (NM_175247, intron 1 of 6)	intron (NM_175247, intron 1 of 6)	828.0	NM_175247	22690.0	Mm.127014	NM_175247	ENSMUSG00000062861	Zfp28	2810438M17Rik|Zfp-28|mkr-5	zinc finger protein 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60838973-2	chr18	60838513	60839513	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011552, intron 4 of 24)	intron (NM_011552, intron 4 of 24)	9951.0	NM_011552	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	0.0	0.0	0.0	0.0	4.0	0.0
Merged-chr13-49108158-3	chr13	49107621	49108621	+	602.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290313, intron 2 of 29)	intron (NM_001290313, intron 2 of 29)	40207.0	NM_029361	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78186144-1	chr9	78185644	78186644	+	602.0	f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-5822.0	NM_010357	14860.0	Mm.2662	NM_010357	ENSMUSG00000032348	Gsta4	GST5.7|mGsta4	glutathione S-transferase, alpha 4	protein-coding	27.0	35.0	42.0	1.0	3.0	3.5
Merged-chr14-16302914-1	chr14	16302414	16303414	+	602.0	f0_balb.idr	intron (NM_021504, intron 10 of 11)	intron (NM_021504, intron 10 of 11)	-53106.0	NM_027695	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	5.0	7.0	9.5	2.0	8.0	12.5
Merged-chr9-122368124-2	chr9	122367624	122368624	+	602.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026179, exon 3 of 7)	exon (NM_026179, exon 3 of 7)	16508.0	NM_026179	67469.0	Mm.280254	NM_026179	ENSMUSG00000032540	Abhd5	1300003D03Rik|2010002J10Rik|CDS|CGI-58|IECN5|NCIE2	abhydrolase domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46948629-2	chr8	46948129	46949129	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38258.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47190227-1	chr14	47189727	47190727	+	602.0	f1_balb.idr	promoter-TSS (NM_008102)	promoter-TSS (NM_008102)	-814.0	NM_008102	14528.0	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTP-CH-I|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	8.0	13.0	5.5	9.5	9.0	5.0
Merged-chr17-28234494-2	chr17	28233994	28234994	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 1 of 7)	intron (NM_011145, intron 1 of 7)	1740.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-105281229-1	chr10	105280729	105281729	+	602.0	f0_c57.idr	intron (NM_177368, intron 8 of 11)	RMER15|LTR|ERVL	293250.0	NM_177368	278279.0	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	3.5	5.0	3.0	4.5	1.5	6.0
Merged-chr17-31034747-2	chr17	31034282	31035282	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22912.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	12.0	5.5	2.0	0.0	1.5	6.0
Merged-chr4-40723863-2	chr4	40723363	40724363	+	602.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029594)	TTS (NR_029594)	933.0	NM_001164672	15502.0	Mm.27897	NM_008298	ENSMUSG00000028410	Dnaja1	HSJ-2|Hsj2|Nedd7	DnaJ heat shock protein family (Hsp40) member A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-14954432-2	chr17	14953932	14954932	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024250, intron 6 of 11)	intron (NM_024250, intron 6 of 11)	6828.0	NM_001360983	72057.0	Mm.440085	NM_024250	ENSMUSG00000023883	Phf10	1810055P05Rik|AV024533	PHD finger protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134130926-1	chr6	134130426	134131426	+	602.0	f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	95226.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	1.5	4.0	0.0	1.5	3.0	3.0
Merged-chr11-29714972-2	chr11	29714472	29715472	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194054, intron 3 of 8)	intron (NM_194054, intron 3 of 8)	-3591.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	9.5	14.5	6.0	2.5	5.5	15.5
Merged-chr8-80963280-2	chr8	80962762	80963762	+	602.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51644.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	15.5	12.5	3.5	4.0	11.5	6.5
Merged-chr17-64737838-2	chr17	64737338	64738338	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 19 of 21)	intron (NM_008549, intron 19 of 21)	-29273.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90363249-2	chr5	90362749	90363749	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198010, intron 1 of 32)	intron (NM_198010, intron 1 of 32)	2936.0	NM_030886	81702.0	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-7898619-2	chr17	7898119	7899119	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27381.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41555911-1	chr4	41555411	41556411	+	602.0	f1_c57bl6.idr	intron (NM_027993, intron 1 of 5)	intron (NM_027993, intron 1 of 5)	13616.0	NM_001159583	71901.0	Mm.39215	NM_027993	ENSMUSG00000028439	Fam219a	2310028H24Rik	family with sequence similarity 219, member A	protein-coding	35.5	82.5	79.5	4.0	6.5	3.5
Merged-chr18-20811958-1	chr18	20811458	20812458	+	602.0	f0_balb.idr	Intergenic	Intergenic	-65554.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160660856-1	chr2	160660356	160661356	+	602.0	f1_c57bl6.idr	intron (NM_009408, intron 2 of 20)	intron (NM_009408, intron 2 of 20)	14959.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	4.0	3.5	1.5	1.0	0.5	12.5
Merged-chr9-102841286-1	chr9	102840786	102841786	+	602.0	f0_balb.idr	intron (NM_001284258, intron 1 of 13)	intron (NM_001284258, intron 1 of 13)	6366.0	NM_001284258	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	0.0	3.0	0.0	0.0	0.0	0.0
Merged-chr1-125390783-2	chr1	125390292	125391292	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	44935.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.0	0.5	0.5	1.0	0.0	12.5
Merged-chr2-32745869-2	chr2	32745369	32746369	+	602.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001252547, exon 4 of 11)	exon (NM_001252547, exon 4 of 11)	-4853.0	NM_027529	70730.0	Mm.401360	NM_027529	ENSMUSG00000009551	6330409D20Rik	AA517851	RIKEN cDNA 6330409D20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-12728568-2	chr10	12728068	12729068	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 14 of 73)	intron (NM_011682, intron 14 of 73)	133167.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-66063448-2	chr1	66062948	66063948	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111881.0	NM_008632	17756.0	Mm.256966	NM_008632	ENSMUSG00000015222	Map2	G1-397-34|MAP-2|Mtap-2|Mtap2|repro4	microtubule-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-53397105-2	chr17	53396605	53397605	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	66216.0	NM_172497	211482.0	Mm.60887	NM_172497	ENSMUSG00000023931	Efhb	4921525D22Rik	EF hand domain family, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114044407-2	chr6	114043907	114044907	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2327.0	NM_009723	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72292572-2	chr8	72292072	72293072	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26490.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	4.0	0.0	0.0	0.0	1.5	1.5
Merged-chr4-34960301-1	chr4	34959801	34960801	+	602.0	f0_balb.idr	intron (NM_178061, intron 3 of 3)	intron (NM_178061, intron 3 of 3)	-48820.0	NR_040652	73696.0	Mm.1361	NR_040652	ENSMUSG00000085824	Platr9	2410114N07Rik	pluripotency associated transcript 9	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-143100002-2	chr2	143099502	143100502	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	21609.0	NM_020595	57329.0	Mm.157751	NM_020595	ENSMUSG00000027416	Otor	CDRAP|Fdp|MIA|MIAL	otoraplin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-57514922-2	chr8	57514422	57515422	+	602.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008252, exon 5 of 5)	3' UTR (NM_008252, exon 5 of 5)	3079.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-18965550-2	chr10	18965050	18966050	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46413.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95011787-2	chr11	95011287	95012287	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146025, intron 1 of 9)	intron (NM_146025, intron 1 of 9)	1908.0	NM_146025	217125.0	Mm.297199	NM_146025	ENSMUSG00000047181	Samd14	AI839049|AI854782|BC034054	sterile alpha motif domain containing 14	protein-coding	0.0	1.5	0.0	0.5	2.5	2.0
Merged-chr1-127443745-1	chr1	127443245	127444245	+	602.0	f1_c57bl6.idr	intron (NM_145128, intron 12 of 17)	intron (NM_145128, intron 12 of 17)	234276.0	NM_028135	72160.0	Mm.281287	NM_028135	ENSMUSG00000026347	Tmem163	2610024A01Rik|A-cre|Act-Cre|SV31|Tg(ACTB-cre)2Mrt|actin-cre|cre<actin>	transmembrane protein 163	protein-coding	0.0	0.0	0.0	1.0	2.0	1.5
Merged-chr4-108580260-1	chr4	108579760	108580760	+	602.0	f1_balb.idr	promoter-TSS (NM_172697)	promoter-TSS (NM_172697)	806.0	NM_011015	18392.0	Mm.294154	NM_011015	ENSMUSG00000028587	Orc1	AA545195|MmORC1|Orc1l	origin recognition complex, subunit 1	protein-coding	0.0	0.0	4.0	2.0	3.5	5.5
Merged-chr10-93306096-1	chr10	93305596	93306596	+	602.0	f0_balb.idr	intron (NM_001322265, intron 1 of 4)	intron (NM_001322265, intron 1 of 4)	5063.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	4.5	2.5	0.0	0.0	1.0	0.0
Merged-chr6-127352863-2	chr6	127352363	127353363	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44896.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46166665-2	chr8	46166165	46167165	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357216, intron 2 of 5)	intron (NM_001357216, intron 2 of 5)	2661.0	NM_001357215	66756.0	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430	cilia and flagella associated protein 97	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20475186-1	chr11	20474686	20475686	+	602.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-68067.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	23.5	11.0	6.0	33.0	14.0	12.0
Merged-chr17-33937047-2	chr17	33936547	33937547	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009059, intron 17 of 17)	intron (NM_009059, intron 17 of 17)	3283.0	NM_001185182	14976.0	Mm.2948	NM_010385	ENSMUSG00000024309	Pfdn6	H-2Ke2|H2-Ke2|Ke-2	prefoldin subunit 6	protein-coding	0.5	11.5	2.0	1.0	7.0	1.5
Merged-chr15-73628053-2	chr15	73627553	73628553	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3309.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67182473-1	chr17	67181973	67182973	+	602.0	f0_balb.idr	intron (NM_001357625, intron 2 of 32)	Lx9|LINE|L1	-156238.0	NR_049205	100885844.0		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	0.0	0.0	1.5	1.0	5.5	1.5
Merged-chr7-25786603-2	chr7	25786103	25787103	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 3 of 19)	C-rich|Low_complexity|Low_complexity	2130.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98870471-2	chr15	98869971	98870971	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033276, intron 1 of 54)	intron (NM_001033276, intron 1 of 54)	734.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-72261530-2	chr2	72261030	72262030	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24107.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25613614-2	chr2	25613114	25614114	+	602.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029859, exon 6 of 14)	exon (NM_029859, exon 6 of 14)	4064.0	NM_029859	77058.0	Mm.478493	NM_029859	ENSMUSG00000026940	Ccdc183	4921530D09Rik|Cccd183|Kiaa1984	coiled-coil domain containing 183	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37573817-2	chr13	37573318	37574318	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	228473.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	2.0	21.5	13.5	15.5	1.0	11.5
Merged-chr14-62875981-1	chr14	62875481	62876481	+	602.0	f1_c57bl6.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	10439.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	40.0	53.5	57.5	15.0	51.5	38.5
Merged-chr3-51750203-2	chr3	51749703	51750703	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	89024.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54739535-1	chr14	54739035	54740035	+	602.0	f0_balb.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	-27361.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	4.0	11.5	8.0	3.0	18.5	9.5
Merged-chr17-23750342-1	chr17	23749842	23750842	+	602.0	f1_balb.idr	intron (NR_015472, intron 2 of 2)	intron (NR_015472, intron 2 of 2)	1106.0	NR_015472	638247.0	Mm.382600	NR_015472	ENSMUSG00000097006	9530082P21Rik	E030034P13Rik	RIKEN cDNA 9530082P21 gene	ncRNA	3.0	24.0	11.0	6.0	62.0	43.5
Merged-chr10-10130593-2	chr10	10130093	10131093	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-229553.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33049063-1	chr2	33048563	33049563	+	602.0	f0_balb.idr	intron (NM_001355201, intron 6 of 29)	intron (NM_001355201, intron 6 of 29)	37394.0	NM_001355202	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120714232-2	chr5	120713732	120714732	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2563.0	NM_008052	14357.0	Mm.1645	NM_008052	ENSMUSG00000029603	Dtx1	Fxit1|mKIAA4160	deltex 1, E3 ubiquitin ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17592577-2	chr17	17592077	17593077	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	31912.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	11.0	26.5	7.5	19.0	10.0	17.5
Merged-chr7-130649313-2	chr7	130648813	130649813	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004468, intron 3 of 21)	intron (NM_001004468, intron 3 of 21)	-43243.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129413246-1	chr2	129412746	129413746	+	602.0	f1_balb.idr	Intergenic	Intergenic	-42107.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	4.0	10.5	1.0	13.0	17.5	9.0
Merged-chr17-73925297-2	chr17	73924797	73925797	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 8 of 35)	intron (NM_011723, intron 8 of 35)	24899.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34255936-2	chr13	34255436	34256436	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	89246.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-75475767-2	chr1	75475267	75476267	+	602.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001001566, exon 4 of 4)	exon (NM_001001566, exon 4 of 4)	3704.0	NM_001001566	74241.0	Mm.260577	NM_001001565	ENSMUSG00000032997	Chpf	1700028N03Rik|AI414328|D1Bwg1363e	chondroitin polymerizing factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-9886886-2	chr19	9886386	9887386	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016692, intron 4 of 17)	intron (NM_016692, intron 4 of 17)	12647.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59661963-2	chr15	59661463	59662463	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	13309.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-53634229-2	chr10	53633729	53634729	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081428, intron 17 of 17)	intron (NM_001081428, intron 17 of 17)	-3790.0	NM_027830	71567.0	Mm.278221	NM_027830	ENSMUSG00000058298	Mcm9	9030408O17Rik|Gm235|Mcmdc1	minichromosome maintenance 9 homologous recombination repair factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78514848-2	chr15	78514348	78515348	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	14803.0	NM_001204153	72709.0	Mm.34776	NM_028331	ENSMUSG00000022440	C1qtnf6	2810036M19Rik|CTRP6	C1q and tumor necrosis factor related protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13297220-2	chr9	13296720	13297720	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50264.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61322795-2	chr18	61322295	61323295	+	601.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_133249, intron 2 of 11)	MIRb|SINE|MIR	75105.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	8.0	20.5	17.5	2.5	21.5	31.5
Merged-chr11-120788314-2	chr11	120787814	120788814	+	601.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026824)	TTS (NM_026824)	3799.0	NM_145370	209318.0	Mm.30195	NM_145370	ENSMUSG00000025156	Gps1	Cops1|Csn1|R75577|Sgn1	G protein pathway suppressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91671533-2	chr12	91671033	91672033	+	601.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	URR1A|DNA|hAT-Charlie	-81046.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31956518-3	chr5	31956015	31957015	+	601.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 7 of 11)	intron (NM_144541, intron 7 of 11)	-179957.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128688376-2	chr7	128687876	128688876	+	601.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346517)	promoter-TSS (NM_001346517)	-494.0	NM_001346517	101490.0	Mm.490344	NM_178641	ENSMUSG00000042105	Inpp5f	5830435P03Rik|AI115354|AW561896|SAC2|cI-27|hSAC2|mKIAA0966	inositol polyphosphate-5-phosphatase F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80221160-2	chr15	80220660	80221660	+	601.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12920.0	NM_001357659	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	1.0	4.0	4.5	5.5	10.0	1.5
Merged-chr1-106717390-4	chr1	106716889	106717889	+	601.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3099.0	NM_177410	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-55285471-1	chr9	55284971	55285971	+	601.75	f0_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-1846.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-115612781-2	chr4	115612281	115613281	+	601.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001100181, intron 9 of 12)	L1_Mus3|LINE|L1	11843.0	NM_001100181	100040843.0	Mm.482683	NM_001100181	ENSMUSG00000063929	Cyp4a32	-	cytochrome P450, family 4, subfamily a, polypeptide 32	protein-coding	6.5	0.0	2.0	0.0	1.0	0.0
Merged-chr8-77426104-3	chr8	77425628	77426628	+	601.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 5 of 22)	intron (NM_030113, intron 5 of 22)	-90928.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148752067-3	chr2	148751575	148752575	+	601.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177655, intron 2 of 3)	intron (NM_177655, intron 2 of 3)	1714.0	NM_177655	228756.0	Mm.189390	NM_177655	ENSMUSG00000055177	Cstl1	RCET1|RCET2|RCET3	cystatin-like 1	protein-coding	6.0	5.0	6.0	15.5	5.5	5.0
Merged-chr4-136364163-3	chr4	136363666	136364666	+	601.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52568.0	NM_001355182	74326.0	Mm.31051	NM_028871	ENSMUSG00000066037	Hnrnpr	2610003J05Rik|2610528B01Rik|Hnrpr	heterogeneous nuclear ribonucleoprotein R	protein-coding	0.0	0.0	0.0	0.0	9.5	3.0
Merged-chr3-83895843-2	chr3	83895343	83896343	+	601.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54235.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14931492-3	chr8	14931049	14932049	+	601.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037736, intron 4 of 27)	intron (NM_001037736, intron 4 of 27)	19886.0	NM_001037736	234094.0	Mm.240298	NM_172751	ENSMUSG00000071176	Arhgef10	6430549H08Rik|mKIAA0294	Rho guanine nucleotide exchange factor (GEF) 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79642745-2	chr11	79642245	79643245	+	601.541626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175543, intron 3 of 14)	(TGAG)n|Simple_repeat|Simple_repeat	-19582.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119914818-2	chr11	119914269	119915269	+	601.533325	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085498, intron 1 of 7)	intron (NM_001085498, intron 1 of 7)	959.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55775199-2	chr14	55774699	55775699	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080435, intron 13 of 25)	intron (NM_080435, intron 13 of 25)	8873.0	NM_080435	104110.0	Mm.287010	NM_080435	ENSMUSG00000022220	Adcy4	mKIAA4004	adenylate cyclase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3514776-2	chr8	3514276	3515276	+	601.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015801)	promoter-TSS (NM_015801)	-608.0	NM_001359122	50767.0	Mm.23085	NM_015801	ENSMUSG00000004565	Pnpla6	AI661849|MSws|Nte	patatin-like phospholipase domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-145214876-2	chr5	145214376	145215376	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359191, intron 4 of 5)	B2_Mm2|SINE|B2	10317.0	NM_001359188	22757.0	Mm.332842	NM_016683	ENSMUSG00000055991	Zkscan5	AI132486|AI326970|Zfp95|hKraba1	zinc finger with KRAB and SCAN domains 5	protein-coding	1.0	0.0	0.0	0.0	1.0	0.0
Merged-chr18-46956722-2	chr18	46956222	46957222	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2154.0	NM_178377	69456.0	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2|Tg(Vav1-icre)A2Kio|Vav-cre|Vav-iCre|Vav1-Cre|VavCre	COMM domain containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59334210-2	chr4	59333710	59334710	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 12 of 16)	intron (NM_001163288, intron 12 of 16)	74159.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	0.0	4.0	0.0	5.0	0.0	1.0
Merged-chr2-124273306-2	chr2	124272806	124273806	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 2 of 20)	Lx5|LINE|L1	-50948.0	NR_040612	75946.0	Mm.415059	NR_040612	ENSMUSG00000086954	4930583P06Rik	-	RIKEN cDNA 4930583P06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95175410-2	chr3	95174910	95175910	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	11071.0	NM_011351	20360.0	Mm.23662	NM_011351	ENSMUSG00000038777	Sema6c	Semay|mKIAA1869	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135970148-2	chr5	135969648	135970648	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160366, intron 2 of 10)	intron (NM_001160366, intron 2 of 10)	4328.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	1.5	0.0	0.0	0.0	0.0	4.0
Merged-chr2-67378768-1	chr2	67378268	67379268	+	601.5	f0_balb.idr	Intergenic	Intergenic	-67234.0	NM_001083919	241431.0	Mm.261043	NM_001024618	ENSMUSG00000027022	Xirp2	2310003D02Rik|2310008C07Rik|A530024P18Rik|AI452089|Cmya3|Gm352|Xin2	xin actin-binding repeat containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26686842-2	chr8	26686342	26687342	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137581.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64589910-2	chr17	64589410	64590410	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11739.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126706999-2	chr7	126706499	126707499	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2183.0	NM_009898	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79401101-2	chr15	79400601	79401601	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172608, intron 1 of 8)	intron (NM_172608, intron 1 of 8)	1818.0	NM_001253817	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	17.0	25.0	2.5	4.5	8.5	8.0
Merged-chr10-19064321-2	chr10	19063821	19064821	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48911.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	17.0	33.5	29.0	17.0	32.5	26.5
Merged-chr5-135706047-2	chr5	135705547	135706547	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 1 of 15)	intron (NM_008898, intron 1 of 15)	16902.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127910909-2	chr7	127910409	127911409	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1608.0	NM_026370	67773.0	Mm.425492	NM_026370	ENSMUSG00000030801	Kat8	2010203C02Rik|5830450F21Rik|D7Ertd629e|MOF|MYST-1|Myst1	K(lysine) acetyltransferase 8	protein-coding	0.0	0.5	1.5	0.0	0.5	1.5
Merged-chr12-73612763-2	chr12	73612257	73613257	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	27961.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	8.5	43.0	26.0	14.0	28.5	25.5
Merged-chr2-35930743-2	chr2	35930243	35931243	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029774, intron 3 of 9)	intron (NM_029774, intron 3 of 9)	48881.0	NM_029774	74410.0	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79250292-2	chr11	79249792	79250792	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019653, intron 2 of 8)	B1F1|SINE|Alu	4403.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64194915-2	chr1	64194415	64195415	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-73526.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114712347-2	chr11	114711847	114712847	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 13 of 13)	intron (NM_053273, intron 13 of 13)	-15065.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89243793-2	chr3	89243293	89244293	+	601.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_183037, exon 3 of 10)	exon (NM_183037, exon 3 of 10)	1220.0	NR_121683	360213.0	Mm.331156	NM_183037	ENSMUSG00000042766	Trim46	TRIFIC	tripartite motif-containing 46	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124488332-2	chr5	124487832	124488832	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029532, intron 1 of 1)	B2_Mm1t|SINE|B2	5177.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167906058-2	chr2	167905558	167906558	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-26269.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-10761380-2	chr15	10760880	10761880	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045063, intron 2 of 6)	(CA)n|Simple_repeat|Simple_repeat	46480.0	NR_045065	75259.0	Mm.33928	NR_045063	ENSMUSG00000096971	4930556M19Rik	1700009D01Rik|C130022M03Rik	RIKEN cDNA 4930556M19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-142015756-2	chr4	142015256	142016256	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2142.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-37770239-2	chr4	37769739	37770739	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	520836.0	NR_151605	102636890.0	Mm.109154	NR_151605	ENSMUSG00000086026	Gm12374	-	predicted gene 12374	ncRNA	0.0	0.0	2.5	0.0	0.5	1.0
Merged-chr18-24429330-2	chr18	24428830	24429830	+	601.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029573)	promoter-TSS (NR_029573)	-160.0	NR_029573	387182.0		NR_029573	ENSMUSG00000065532	Mir187	Mirn187|mir-187|mmu-mir-187	microRNA 187	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8280167-2	chr15	8279667	8280667	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111061.0	NM_001162906	73692.0	Mm.164436	NM_001162906	ENSMUSG00000039801	2410089E03Rik	4732468D17Rik|Hug|Jbts17|b2b012Clo	RIKEN cDNA 2410089E03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4103559-2	chr7	4103059	4104059	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033568, intron 3 of 8)	intron (NR_033568, intron 3 of 8)	-15971.0	NM_001109765	57776.0	Mm.29729	NM_021324	ENSMUSG00000030428	Ttyh1	4930459B04Rik|6330408P11Rik|TTY1|mTTY1|tty	tweety family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-12291804-2	chr12	12291304	12292304	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	29665.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	3.0	5.5	3.5	3.0	5.5	3.0
Merged-chr19-5877272-2	chr19	5876772	5877772	+	601.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361973)	promoter-TSS (NM_001361973)	-550.0	NM_001361973	107375.0	Mm.5323	NM_134154	ENSMUSG00000024818	Slc25a45	AW491445	solute carrier family 25, member 45	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5716479-2	chr13	5715979	5716979	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	141613.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102066420-2	chr15	102065920	102066920	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-7353.0	NM_145625	75705.0	Mm.290022	NM_145625	ENSMUSG00000058655	Eif4b	2310046H11Rik|AL024095|C85189|Eif4a2	eukaryotic translation initiation factor 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180779944-2	chr1	180779444	180780444	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33661.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38389928-2	chr18	38389428	38390428	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12H|LTR|ERVK	-28979.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54263504-2	chr11	54263004	54264004	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3775.0	NM_010556	16187.0	Mm.983	NM_010556	ENSMUSG00000018914	Il3	BPA|Csfmu|HCGF|Il-3|MCGF|PSF	interleukin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128227083-2	chr7	128226583	128227583	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10274.0	NM_146205	233912.0	Mm.475117	NM_146205	ENSMUSG00000042178	Armc5	AW049683|BC032200	armadillo repeat containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67241851-2	chr7	67241351	67242351	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291195, intron 8 of 10)	intron (NM_001291195, intron 8 of 10)	19235.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191909679-2	chr1	191909179	191910179	+	601.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009579, exon 2 of 2)	exon (NM_009579, exon 2 of 2)	-2152.0	NR_030669	98736.0	Mm.379232	NM_001024489	ENSMUSG00000055833	1700034H15Rik	4930557M11Rik|BB016121	RIKEN cDNA 1700034H15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105692424-2	chr5	105691924	105692924	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7545.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	1.5	4.5	0.0	0.0	0.0	0.0
Merged-chr11-68956263-2	chr11	68955763	68956763	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177566, intron 1 of 15)	intron (NM_177566, intron 1 of 15)	595.0	NM_177566	442801.0	Mm.376147	NM_177566	ENSMUSG00000052921	Arhgef15	D130071N09|D530030K12Rik|E5	Rho guanine nucleotide exchange factor (GEF) 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-24509105-2	chr9	24508605	24509605	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-5965.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-48624988-2	chr13	48624488	48625488	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207232, intron 1 of 9)	MIRb|SINE|MIR	684.0	NM_207232	218232.0	Mm.315089	NM_207232	ENSMUSG00000038042	Ptpdc1	AI843923|AW456874|Naa-1|Ptpcd1	protein tyrosine phosphatase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82894907-2	chr18	82894407	82895407	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15972.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-47042080-2	chr7	47041580	47042580	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-8560.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125379034-2	chr5	125378534	125379534	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	10983.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	2.5	1.0	6.5	1.0	0.5	7.5
Merged-chr12-76669968-2	chr12	76669468	76670468	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013675, intron 1 of 35)	MIR|SINE|MIR	40579.0	NM_013675	20741.0	Mm.32881	NM_013675	ENSMUSG00000021061	Sptb	AI842465|D330027P03Rik|Gm1301|Spnb-1|Spnb1|ja|jaundiced|mKIAA4219	spectrin beta, erythrocytic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105110275-2	chr4	105109775	105110775	+	601.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178143)	promoter-TSS (NM_178143)	-377.0	NM_001356568	108079.0	Mm.48638	NM_178143	ENSMUSG00000028518	Prkaa2	2310008I11Rik|A830082D05|AMPKalpha2	protein kinase, AMP-activated, alpha 2 catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10469995-2	chr16	10469495	10470495	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10077.0	NM_001302619	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-31796379-1	chr11	31795879	31796879	+	601.5	f0_balb.idr	Intergenic	Intergenic	28168.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	11.0	1.0	15.0	9.0	10.5	11.5
Merged-chr19-57725099-2	chr19	57724599	57725599	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181415, intron 19 of 28)	RMER1B|Other|Other	114065.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-119170350-2	chr12	119169850	119170850	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177290, intron 10 of 13)	intron (NM_177290, intron 10 of 13)	67926.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-65076397-2	chr12	65075897	65076897	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178912, intron 1 of 22)	intron (NM_178912, intron 1 of 22)	791.0	NM_178912	104806.0	Mm.374847	NM_178912	ENSMUSG00000055884	Fancm	AI427100|C730036B14Rik|D12Ertd364e	Fanconi anemia, complementation group M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153750446-2	chr1	153749946	153750946	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011882, intron 1 of 8)	MIR|SINE|MIR	1020.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107682087-2	chr4	107681587	107682587	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019872, intron 1 of 3)	intron (NM_019872, intron 1 of 3)	1502.0	NR_151717	56296.0	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	0.0	0.0	1.0	4.5	0.0	3.0
Merged-chr15-98866743-2	chr15	98866243	98867243	+	601.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033276, exon 2 of 55)	5' UTR (NM_001033276, exon 2 of 55)	4462.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-51518870-3	chr1	51518384	51519384	+	601.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151621, intron 3 of 3)	intron (NR_151621, intron 3 of 3)	-40485.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55836513-2	chr16	55836013	55837013	+	601.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159395, intron 1 of 12)	intron (NM_001159395, intron 1 of 12)	2128.0	NM_030612	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-148986986-2	chr3	148986511	148987511	+	601.333374	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32376.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	3.5	3.5	3.0	11.5	9.0	0.0
Merged-chr8-70627976-2	chr8	70627503	70628503	+	601.333374	f0_c57.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	4092.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	17.5	20.0	8.5	29.5	8.5	10.5
Merged-chr16-87496892-2	chr16	87496392	87497392	+	601.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_040375, intron 1 of 2)	Lx|LINE|L1	819.0	NR_040375	414095.0	Mm.166361	NR_040375	ENSMUSG00000093606	B130034C11Rik	-	RIKEN cDNA B130034C11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114983315-3	chr11	114982787	114983787	+	601.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145437, exon 4 of 4)	3' UTR (NM_145437, exon 4 of 4)	6599.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	7.5	31.0	16.5	55.5	139.5	74.5
Merged-chr17-35198884-2	chr17	35198384	35199384	+	601.333313	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001278601)	TTS (NM_001278601)	3123.0	NM_013693	21926.0	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	0.0	2.0	1.0	12.5	3.0	0.0
Merged-chr8-19162742-1	chr8	19162242	19163242	+	601.333313	f1_balb.idr	Intergenic	Intergenic	4855.0	NM_153115	78128.0	Mm.229357	NM_153115	ENSMUSG00000079842	Spag11a	9230111C08Rik|Bin1b|EP2Q|EP2e|Spag11	sperm associated antigen 11A	protein-coding	6.0	14.0	5.5	7.5	10.5	6.5
Merged-chr4-150092512-3	chr4	150092018	150093018	+	601.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177366, intron 1 of 3)	intron (NM_177366, intron 1 of 3)	5015.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86272418-3	chr15	86271954	86272954	+	601.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 4 of 12)	MTD|LTR|ERVL-MaLR	-5221.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63967756-3	chr14	63967245	63968245	+	601.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20035.0	NM_026359	67750.0	Mm.33864	NM_026359	ENSMUSG00000021961	4930578I06Rik	AI429111	RIKEN cDNA 4930578I06 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-39078687-3	chr15	39078160	39079160	+	601.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026778, intron 1 of 3)	intron (NM_026778, intron 1 of 3)	1728.0	NM_026778	68588.0	Mm.41556	NM_026778	ENSMUSG00000054196	Cthrc1	1110014B07Rik	collagen triple helix repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4252296-3	chr8	4251748	4252748	+	601.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133968)	promoter-TSS (NM_133968)	-854.0	NM_133968	102209.0	Mm.28452	NM_133968	ENSMUSG00000011837	Snapc2	0610007H10Rik|AU015675	small nuclear RNA activating complex, polypeptide 2	protein-coding	0.0	2.5	0.0	0.0	9.0	0.5
Merged-chr4-134838431-3	chr4	134837923	134838923	+	601.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355499, intron 1 of 11)	intron (NM_001355499, intron 1 of 11)	14922.0	NM_001355501	66146.0	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61|Maco1	transmembrane protein 57	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-85188154-2	chr13	85187635	85188635	+	601.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-1250.0	NM_001347587	66671.0	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	0.0	5.5	3.0	0.0	2.0	2.5
Merged-chr5-43230154-2	chr5	43229654	43230654	+	601.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 1 of 7)	L2|LINE|L2	-3309.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65391483-2	chr9	65390983	65391983	+	601.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_028974, exon 1 of 1)	exon (NM_028974, exon 1 of 1)	169.0	NM_028974	74492.0	Mm.159223	NM_028974	ENSMUSG00000054978	Kbtbd13	5430433E21Rik	kelch repeat and BTB (POZ) domain containing 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25816114-2	chr7	25815614	25816614	+	601.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_028775, intron 1 of 8)	intron (NM_028775, intron 1 of 8)	416.0	NM_028775	74134.0	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137302713-2	chr5	137302177	137303177	+	601.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359602, intron 3 of 19)	intron (NM_001359602, intron 3 of 19)	4997.0	NM_031405	83701.0	Mm.387734	NM_031405	ENSMUSG00000037364	Srrt	2810019G02Rik|ASR2A|ASR2B|ASR2C|ASR2D|Ars2|Asr2	serrate RNA effector molecule homolog (Arabidopsis)	protein-coding	1.5	0.0	0.0	2.5	0.0	2.5
Merged-chr2-178957337-2	chr2	178956743	178957743	+	601.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-457693.0	NM_026596	68175.0	Mm.158187	NM_026596		4930591A17Rik	-	RIKEN cDNA 4930591A17 gene	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr8-119802072-2	chr8	119801619	119802619	+	601.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-23703.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-76255110-2	chr2	76254609	76255609	+	601.25	f0_balb.idr|f1_c57bl6.idr	intron (NM_001081033, intron 2 of 19)	intron (NM_001081033, intron 2 of 19)	83544.0	NM_001081033	241489.0	Mm.246613	NM_001081033	ENSMUSG00000075270	Pde11a	6330414F14Rik|A630086N24Rik|Gm350|PDE11A1	phosphodiesterase 11A	protein-coding	2.0	0.0	5.0	4.0	2.5	1.0
Merged-chr2-112332693-2	chr2	112332193	112333193	+	601.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_133648, intron 2 of 24)	Lx8b|LINE|L1	35334.0	NM_026519	68032.0	Mm.220942	NM_026519	ENSMUSG00000027131	Emc4	2610318K02Rik|Tmem85	ER membrane protein complex subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40513206-2	chr19	40512705	40513705	+	601.25	f0_balb.idr|f1_c57bl6.idr	intron (NM_009166, intron 1 of 23)	intron (NM_009166, intron 1 of 23)	531.0	NM_178362	20411.0	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	1.5	0.5	2.5	4.5	6.0	4.0
Merged-chr8-10834312-3	chr8	10833814	10834814	+	601.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTG)n|Simple_repeat|Simple_repeat	48140.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124879932-2	chr2	124879432	124880432	+	601.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-188195.0	NM_175034	317750.0	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70443894-2	chr11	70443394	70444394	+	601.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	5639.0	NR_106064	102465670.0		NR_106064	ENSMUSG00000099109	Mir7115	Gm27902|mmu-mir-7115	microRNA 7115	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43311761-2	chr7	43311226	43312226	+	601.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357812, intron 1 of 4)	intron (NM_001357812, intron 1 of 4)	1574.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58035654-3	chr13	58035156	58036156	+	601.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195075, intron 8 of 16)	intron (NM_001195075, intron 8 of 16)	-12456.0	NR_030544	100124491.0		NR_030544	ENSMUSG00000077962	Mir874	Mirn874|mir-874|mmu-mir-874	microRNA 874	ncRNA	1.5	0.0	0.0	0.0	0.0	2.5
Merged-chr6-66955418-2	chr6	66954918	66955918	+	601.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177560, intron 3 of 4)	intron (NM_001177560, intron 3 of 4)	58527.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77984263-2	chr10	77983763	77984763	+	601.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026431, intron 6 of 6)	intron (NM_026431, intron 6 of 6)	5613.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-14097723-2	chr14	14097223	14098223	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139227, intron 10 of 11)	intron (NM_139227, intron 10 of 11)	23181.0	NM_025550	66413.0	Mm.27591	NM_025550	ENSMUSG00000021737	Psmd6	2400006A19Rik	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136174575-2	chr1	136174075	136175075	+	601.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153829, exon 36 of 36)	non-coding (NR_153829, exon 36 of 36)	38253.0	NM_001329610	76422.0	Mm.159735	NM_001329610		Mroh3	2310006M14Rik	maestro heat-like repeat family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5964936-2	chr19	5964436	5965436	+	601.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008893)	promoter-TSS (NM_008893)	-730.0	NM_008893	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63067773-2	chr14	63067273	63068273	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12700.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107188442-1	chr3	107187942	107188942	+	601.0	f1_c57bl6.idr	intron (NM_001081140, intron 1 of 1)	intron (NM_001081140, intron 1 of 1)	5299.0	NM_001081140	242151.0	Mm.245155	NM_001081140	ENSMUSG00000042861	Kcna10	Gm1962|Kcna8|Kv1.8	potassium voltage-gated channel, shaker-related subfamily, member 10	protein-coding	4.0	0.0	0.0	2.5	9.0	5.0
Merged-chr13-37594828-1	chr13	37594328	37595328	+	601.0	f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-231210.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	107.0	252.0	176.0	121.0	205.5	108.5
Merged-chr10-19094065-1	chr10	19093565	19094565	+	601.0	f0_balb.idr	Intergenic	RSINE1|SINE|B4	-47684.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	17.5	36.5	42.0	22.0	19.5	26.5
Merged-chr18-60833453-2	chr18	60832953	60833953	+	601.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001198984, exon 8 of 26)	exon (NM_001198984, exon 8 of 26)	15511.0	NM_011552	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	3.0	0.0	3.0	3.0	2.5	11.0
Merged-chr5-75067131-3	chr5	75066628	75067628	+	601.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8473.0	NM_133256	14843.0	Mm.218752	NM_133256	ENSMUSG00000035946	Gsx2	Gsh-2|Gsh2	GS homeobox 2	protein-coding	0.5	0.0	2.0	0.0	0.0	0.0
Merged-chr7-35098460-1	chr7	35097960	35098960	+	601.0	f1_balb.idr	Intergenic	L1MB2|LINE|L1	-20833.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	6.5	12.5	21.5	5.5	18.5	12.5
Merged-chr1-136679866-1	chr1	136679366	136680366	+	601.0	f1_balb.idr	Intergenic	B1_Mus2|SINE|Alu	-3530.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	2.0	0.0	6.5	2.0	0.0	4.0
Merged-chr16-94237497-2	chr16	94236997	94237997	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 5 of 10)	intron (NM_001360045, intron 5 of 10)	52794.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-136481643-2	chr7	136481143	136482143	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132228.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-63953478-1	chr15	63952978	63953978	+	601.0	f0_balb.idr	intron (NM_001360038, intron 3 of 11)	intron (NM_001360038, intron 3 of 11)	39017.0	NR_029414	74460.0	Mm.390801	NR_029414	ENSMUSG00000100127	Gsdmcl-ps	4933426G20Rik	gasdermin C-like, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-69788837-1	chr13	69788337	69789337	+	601.0	f1_c57bl6.idr	Intergenic	Intergenic	-21045.0	NM_138596	28077.0	Mm.52583	NM_138596	ENSMUSG00000021598	Med10	AA959813|AI385605|C78613|D13Wsu50e	mediator complex subunit 10	protein-coding	5.0	7.0	2.0	3.0	8.0	0.0
Merged-chr11-4098774-2	chr11	4098274	4099274	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144520, intron 11 of 11)	intron (NM_144520, intron 11 of 11)	-3343.0	NM_026443	67900.0	Mm.41719	NM_026443	ENSMUSG00000004748	Mtfp1	1700020C11Rik|2610507A21Rik|AV005788|Mtp18	mitochondrial fission process 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47470702-2	chr19	47470202	47471202	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6291.0	NM_008018	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0.0	0.0	0.5	0.0	0.0	1.0
Merged-chr13-23546219-2	chr13	23545719	23546719	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2167.0	NM_013548	260423.0	Mm.221389	NM_013548	ENSMUSG00000100210	Hist1h3f	H3.2-221|Hist1	histone cluster 1, H3f	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35293251-1	chr12	35292751	35293751	+	601.0	f1_c57bl6.idr	Intergenic	Intergenic	-98354.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	17.0	28.5	29.5	12.5	25.5	24.0
Merged-chr12-64917254-2	chr12	64916754	64917754	+	601.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025605)	promoter-TSS (NM_001025605)	-657.0	NM_001025605	217648.0	Mm.341586	NM_001025605	ENSMUSG00000047227	Gm527	-	predicted gene 527	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-63504019-2	chr15	63503519	63504519	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR18B_MM|LTR|ERVK	-24411.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	1.0	0.0	2.0	0.0	0.0	0.0
Merged-chr18-79109011-2	chr18	79108511	79109511	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053099, intron 1 of 5)	CpG	380.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55704286-2	chr14	55703786	55704786	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019984, intron 14 of 14)	intron (NM_019984, intron 14 of 14)	8802.0	NM_019984	21816.0	Mm.41964	NM_019984	ENSMUSG00000022218	Tgm1	2310004J08Rik|Tgase1	transglutaminase 1, K polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-35939590-2	chr15	35939090	35940090	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1344.0	NM_053071	12864.0	Mm.548	NM_053071	ENSMUSG00000014313	Cox6c	-	cytochrome c oxidase subunit VIc	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166425967-2	chr2	166425467	166426467	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21484.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129381792-2	chr2	129381292	129382292	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10653.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	35.5	89.5	52.5	57.5	109.5	93.0
Merged-chr5-117931624-2	chr5	117931124	117932124	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 19 of 27)	intron (NM_008712, intron 19 of 27)	-45146.0	NM_145564	231670.0	Mm.21912	NM_145564	ENSMUSG00000032898	Fbxo21	2810425J22Rik|AU016673	F-box protein 21	protein-coding	0.5	0.0	0.0	0.0	9.5	0.0
Merged-chr12-91587115-1	chr12	91586615	91587615	+	601.0	f0_balb.idr	intron (NM_175335, intron 1 of 8)	intron (NM_175335, intron 1 of 8)	2534.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84934489-1	chr1	84933989	84934989	+	601.0	f0_balb.idr	intron (NM_027921, intron 1 of 4)	intron (NM_027921, intron 1 of 4)	594.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-86781788-1	chr14	86781288	86782288	+	601.0	f0_balb.idr	intron (NM_019670, intron 25 of 27)	intron (NM_019670, intron 25 of 27)	359436.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	0.0	4.5	0.0	7.0	0.0	3.5
Merged-chr14-30218261-1	chr14	30217761	30218761	+	601.0	f0_balb.idr	intron (NM_001083616, intron 3 of 46)	intron (NM_001083616, intron 3 of 46)	135225.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	10.5	2.5	3.0	6.0	3.5	0.5
Merged-chr7-141480025-2	chr7	141479525	141480525	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252588, intron 1 of 7)	B1_Mm|SINE|Alu	3645.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-92791561-2	chr13	92791061	92792061	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011582, intron 1 of 21)	intron (NM_011582, intron 1 of 21)	3257.0	NM_011582	21828.0	Mm.20865	NM_011582	ENSMUSG00000021702	Thbs4	TSP4	thrombospondin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143437811-2	chr7	143437311	143438311	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	23239.0	NM_009876	12577.0	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89212217-1	chr15	89211717	89212717	+	601.0	f0_balb.idr	intron (NM_026813, intron 1 of 24)	intron (NM_026813, intron 1 of 24)	658.0	NM_027805	71474.0	Mm.184055	NM_026813	ENSMUSG00000036561	Ppp6r2	1110033O10Rik|8430411H09Rik|B230107H12Rik|Pp6r2|Saps2	protein phosphatase 6, regulatory subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148674747-1	chr4	148674247	148675247	+	601.0	f1_c57bl6.idr	Intergenic	Intergenic	31430.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	6.0	19.0	16.0	3.0	1.5	3.5
Merged-chr10-63378504-2	chr10	63378004	63379004	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3939.0	NM_001253685	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-48423624-2	chr10	48423124	48424124	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	1364313.0	NM_001358866	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	0.0	0.0	0.0	8.5	0.0	0.0
Merged-chr4-144903317-2	chr4	144902817	144903817	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	10180.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88648910-1	chr3	88648410	88649410	+	601.0	f1_balb.idr	TTS (NM_001198911)	TTS (NM_001198911)	4232.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	11.0	18.0	15.0	7.0	9.0	18.0
Merged-chr3-37727571-2	chr3	37727071	37728071	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3211.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-28481865-1	chr18	28481365	28482365	+	601.0	f1_balb.idr	Intergenic	B3A|SINE|B2	-78299.0	NR_045398	320624.0	Mm.50107	NR_045398		4930474G06Rik	-	RIKEN cDNA 4930474G06 gene	ncRNA	0.5	0.0	2.0	0.0	1.5	3.5
Merged-chr5-31108206-2	chr5	31107706	31108706	+	601.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177677)	promoter-TSS (NM_177677)	38.0	NM_001347323	22784.0	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84191061-1	chr8	84190561	84191561	+	601.0	f1_balb.idr	Intergenic	Intergenic	-12100.0	NR_029821	723819.0		NR_029821	ENSMUSG00000065483	Mir181c	Mirn181c|mir-181c	microRNA 181c	ncRNA	17.5	25.0	8.0	16.5	23.5	12.0
Merged-chr18-9707081-1	chr18	9706581	9707581	+	601.0	f0_balb.idr	promoter-TSS (NM_130449)	promoter-TSS (NM_130449)	-567.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	9.0	13.5	17.0	15.0	46.0	21.0
Merged-chr7-126102836-2	chr7	126102336	126103336	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 23 of 23)	intron (NM_028816, intron 23 of 23)	-20425.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28314387-1	chr7	28313887	28314887	+	601.0	f1_balb.idr	TTS (NM_013676)	TTS (NM_013676)	-2341.0	NM_025616	66525.0	Mm.167913	NM_025616	ENSMUSG00000003438	Timm50	2810403L02Rik|AU015082|TIM50L	translocase of inner mitochondrial membrane 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83735241-2	chr17	83734741	83735741	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 3 of 16)	B1_Mus1|SINE|Alu	29078.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180954354-1	chr2	180953854	180954854	+	601.0	f0_balb.idr	intron (NM_001141933, intron 1 of 5)	intron (NM_001141933, intron 1 of 5)	345.0	NM_001141933	58237.0	Mm.40361	NM_021426	ENSMUSG00000027574	Nkain4	AB030182|C030019F02Rik	Na+/K+ transporting ATPase interacting 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-73435126-1	chr16	73434626	73435626	+	601.0	f0_balb.idr	Intergenic	RSINE1|SINE|B4	771977.0	NM_019413	19876.0	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180255232-2	chr1	180254732	180255732	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128605, intron 1 of 10)	intron (NM_001128605, intron 1 of 10)	1068.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-143151386-2	chr4	143150886	143151886	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001256380, intron 6 of 7)	intron (NM_001256380, intron 6 of 7)	-15224.0	NR_105988	102465618.0		NR_105988	ENSMUSG00000106597	Mir7021	mmu-mir-7021	microRNA 7021	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-18997939-1	chr10	18997439	18998439	+	601.0	f1_balb.idr	Intergenic	RLTR34B_MM|LTR|ERVK	14024.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	10.0	1.0	0.0	0.0	3.0	2.0
Merged-chr16-17913653-1	chr16	17913153	17914153	+	601.0	f1_c57bl6.idr	TTS (NM_029469)	TTS (NM_029469)	1406.0	NM_029469	195333.0	Mm.463003	NM_029469	ENSMUSG00000022738	Gsc2	4930568H22Rik|GSC-2|Gscl	goosecoid homebox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57087154-1	chr17	57086654	57087654	+	601.0	f1_balb.idr	intron (NM_009451, intron 1 of 3)	intron (NM_009451, intron 1 of 3)	628.0	NM_009451	22153.0	Mm.7420	NM_009451	ENSMUSG00000062591	Tubb4a	AI325297|M(beta)4|Tubb|Tubb4	tubulin, beta 4A class IVA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116127358-2	chr11	116126858	116127858	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178802, intron 4 of 5)	intron (NM_178802, intron 4 of 5)	3770.0	NM_178802	338364.0	Mm.439976	NM_178802	ENSMUSG00000054517	Trim65	4732463G12Rik	tripartite motif-containing 65	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr17-33642298-1	chr17	33641798	33642798	+	601.0	f1_c57bl6.idr	intron (NM_001002842, intron 4 of 9)	intron (NM_001002842, intron 4 of 9)	4203.0	NR_028279	378460.0	Mm.272606	NM_001002842	ENSMUSG00000032739	Pram1	AY665714	PML-RAR alpha-regulated adaptor molecule 1	protein-coding	0.0	4.0	0.5	0.0	0.0	0.5
Merged-chr15-33359243-2	chr15	33358743	33359743	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176073, intron 4 of 7)	Lx6|LINE|L1	46696.0	NR_033608	73486.0	Mm.483393	NM_028551	ENSMUSG00000058101	1700084J12Rik	-	ribosomal protein L7-like 1 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128801412-1	chr2	128800912	128801912	+	601.0	f1_c57bl6.idr	exon (NM_008587, exon 19 of 19)	exon (NM_008587, exon 19 of 19)	-16891.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	11.0	0.5	14.0	2.0	8.0	6.5
Merged-chr1-103871842-2	chr1	103871342	103872342	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-896678.0	NM_011800	23836.0	Mm.103640	NM_011800	ENSMUSG00000050840	Cdh20	Cdh7	cadherin 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21758571-2	chr14	21758002	21759002	+	601.0	f0_balb.idr|f1_balb.idr	intron (NM_001359953, intron 1 of 5)	Lx9|LINE|L1	6950.0	NM_001359953	67630.0	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	47.0	122.5	116.5	53.0	109.5	96.0
Merged-chr1-128696108-1	chr1	128695608	128696608	+	601.0	f1_c57bl6.idr	Intergenic	Intergenic	-103809.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	2.5	9.0	8.5	1.5	0.0	4.5
Merged-chr11-50198387-2	chr11	50197887	50198887	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026543, intron 6 of 6)	intron (NM_026543, intron 6 of 6)	12433.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22187830-1	chr8	22187330	22188330	+	601.0	f1_balb.idr	Intergenic	BGLII_Mur|LTR|ERVK	-2011.0	NM_001004140	80986.0	Mm.22448	NM_001004140	ENSMUSG00000037725	Ckap2	AI461656|AW228814|LB1	cytoskeleton associated protein 2	protein-coding	0.5	5.5	0.0	0.5	0.0	0.0
Merged-chr7-63898013-2	chr7	63897513	63898513	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-18844.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102256511-1	chr7	102256011	102257011	+	601.0	f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-6393.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	0.0	0.0	2.5	2.0	3.5	1.5
Merged-chr4-40293027-2	chr4	40292527	40293527	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MuRRS4-int|LTR|ERV1	-13606.0	NM_001033305	230075.0	Mm.1103	NM_001033305	ENSMUSG00000071014	Ndufb6	CI-B17|Gm137	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110428649-2	chr11	110428149	110429149	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	29547.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	5.0	12.5	8.5	5.0	12.5	8.0
Merged-chr5-96982926-2	chr5	96982426	96983426	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14763.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-26455225-2	chr12	26454725	26455725	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021384, intron 1 of 5)	intron (NM_021384, intron 1 of 5)	1227.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.0	8.5	0.0	6.5	14.0	6.0
Merged-chr8-27041861-2	chr8	27041361	27042361	+	601.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054057)	promoter-TSS (NM_054057)	-694.0	NM_001039078	114863.0	Mm.277501	NM_054057	ENSMUSG00000031485	Plpbp	1700024N20Rik|2200002F22Rik|Prosc	pyridoxal phosphate binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76203574-2	chr14	76203074	76204074	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-47888.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33898177-1	chr17	33897677	33898677	+	601.0	f1_c57bl6.idr	Intergenic	RLTR42-int|LTR|ERVK	-6958.0	NR_040470	474160.0	Mm.206186	NR_040470	ENSMUSG00000092349	Platr17	-	pluripotency associated transcript 17	ncRNA	0.0	2.5	2.0	7.5	3.5	6.0
Merged-chr9-7898712-2	chr9	7898212	7899212	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25542.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-174239966-1	chr1	174239466	174240466	+	601.0	f0_balb.idr	intron (NM_011465, intron 43 of 51)	intron (NM_011465, intron 43 of 51)	11010.0	NM_146715	258710.0	Mm.377647	NM_146715	ENSMUSG00000050788	Olfr419	MOR267-6	olfactory receptor 419	protein-coding	0.5	12.0	2.0	7.5	3.5	2.5
Merged-chr17-41961709-1	chr17	41961209	41962209	+	601.0	f1_c57bl6.idr	Intergenic	Intergenic	-354238.0	NM_028474	627626.0	Mm.390999	NM_028474	ENSMUSG00000042256	Ptchd4	3110082D06Rik|Gm321	patched domain containing 4	protein-coding	1.5	1.5	0.0	6.5	2.0	1.0
Merged-chr5-61453235-2	chr5	61452735	61453735	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-355608.0	NM_019468	14380.0	Mm.347430	NM_019468	ENSMUSG00000089992	G6pd2	G6pdx-ps1|Gpd-2|Gpd2	glucose-6-phosphate dehydrogenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27321285-2	chr3	27320785	27321785	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009425, intron 1 of 4)	intron (NM_009425, intron 1 of 4)	4208.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-65779364-2	chr14	65778864	65779864	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26547.0	NM_023209	52033.0	Mm.24337	NM_023209	ENSMUSG00000022033	Pbk	2810434B10Rik|AW538537|D14Ertd732e|TOPK	PDZ binding kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122133757-1	chr5	122133257	122134257	+	601.0	f1_c57bl6.idr	intron (NM_183307, intron 2 of 12)	intron (NM_183307, intron 2 of 12)	1136.0	NM_001289811	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	0.0	0.0	0.0	2.0	0.0	0.0
Merged-chr11-106027909-2	chr11	106027409	106028409	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037712, intron 12 of 12)	intron (NM_001037712, intron 12 of 12)	-8963.0	NM_027946	71833.0	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42101588-1	chr19	42101088	42102088	+	601.0	f1_c57bl6.idr	intron (NM_145501, intron 2 of 8)	B3A|SINE|B2	11153.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	7.0	3.0	2.5	12.0	5.5	5.0
Merged-chr3-122649225-1	chr3	122648725	122649725	+	601.0	f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-29511.0	NM_001114665	214459.0	Mm.209491	NM_153118	ENSMUSG00000039735	Fnbp1l	2610318I01Rik|AW548221|TOCA1|toca-1	formin binding protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-72888558-1	chr15	72888058	72889058	+	601.0	f1_balb.idr	intron (NM_001164642, intron 16 of 16)	ORR1F|LTR|ERVL-MaLR	-78234.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	2.0	3.5	1.5	9.0	0.0	10.0
Merged-chr6-115966566-2	chr6	115966066	115967066	+	601.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026376, exon 19 of 36)	exon (NM_026376, exon 19 of 36)	21635.0	NM_138311	171506.0	Mm.21899	NM_138311	ENSMUSG00000042279	H1foo	C86609|H1.8|H1fo|H1oo	H1 histone family, member O, oocyte-specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-24680923-1	chr12	24680423	24681423	+	601.0	f0_balb.idr	5' UTR (NM_001161807, exon 1 of 5)	5' UTR (NM_001161807, exon 1 of 5)	872.0	NM_138686	12879.0	Mm.52265	NM_138686	ENSMUSG00000062563	Cys1	2900006B19Rik|AV218859|Ccap|ck|cpk	cystin 1	protein-coding	0.0	0.0	1.5	0.0	0.0	2.5
Merged-chr3-146645696-1	chr3	146645196	146646196	+	601.0	f0_balb.idr	TTS (NM_029144)	TTS (NM_029144)	3764.0	NR_045949	100286843.0	Mm.475299	NR_045949	ENSMUSG00000085810	Gm16325	-	predicted gene 16325	ncRNA	0.0	0.0	2.0	0.0	8.5	4.0
Merged-chr4-63883443-1	chr4	63882943	63883943	+	601.0	f0_balb.idr	Intergenic	Intergenic	-22159.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29412619-1	chr2	29412119	29413119	+	601.0	f0_balb.idr	intron (NM_001290490, intron 3 of 5)	intron (NM_001290490, intron 3 of 5)	34105.0	NM_001290490	68975.0	Mm.330109	NM_026896	ENSMUSG00000026799	Med27	1500015J03Rik|2310042P07Rik|AA682045|Crsp8|D2Ertd434e	mediator complex subunit 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88555716-2	chr3	88555216	88556216	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033526, intron 2 of 10)	intron (NM_033526, intron 2 of 10)	2000.0	NM_033526	94232.0	Mm.303059	NM_033526	ENSMUSG00000008604	Ubqln4	A1Up|A1u|AI663987|CIP75|UBIN	ubiquilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95514487-1	chr9	95513987	95514987	+	601.0	f0_c57.idr	Intergenic	MERVL-int|LTR|ERVL	-2491.0	NM_001357974	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	5.5	10.0	4.5	4.5	11.0	4.0
Merged-chr5-76322459-1	chr5	76321959	76322959	+	601.0	f0_balb.idr	intron (NM_001310637, intron 2 of 4)	intron (NM_001310637, intron 2 of 4)	8697.0	NM_001310637	79455.0	Mm.143764	NM_023508	ENSMUSG00000029235	Pdcl2	1700010B22Rik|1700016K07Rik|Mgcphlp|Tphlp	phosducin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-72808432-2	chr15	72807932	72808932	+	601.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_002864, exon 1 of 1)	non-coding (NR_002864, exon 1 of 1)	1892.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84769035-2	chr18	84768535	84769535	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24968.0	NR_155706	102641800.0		NR_155706		Gm38576	-	predicted gene, 38576	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61526153-2	chr8	61525653	61526653	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 16 of 21)	intron (NM_001293772, intron 16 of 21)	38419.0	NM_145595	234309.0	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-125748054-2	chr10	125747554	125748554	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-218165.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44378730-2	chr11	44378293	44379293	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21270.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	4.5	5.0	4.5	14.5	1.0	1.5
Merged-chr6-124915246-2	chr6	124914746	124915746	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026988, intron 1 of 4)	intron (NM_026988, intron 1 of 4)	-1617.0	NR_152158	442825.0	Mm.446713	NR_152158	ENSMUSG00000055818	A230083G16Rik	-	RIKEN cDNA A230083G16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-83537295-2	chr9	83536795	83537795	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-11043.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	15.0	31.0	33.5	4.5	53.5	27.0
Merged-chr3-121292677-2	chr3	121292177	121293177	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155539, intron 1 of 2)	intron (NR_155539, intron 1 of 2)	937.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128128801-2	chr2	128128301	128129301	+	601.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_207680, exon 2 of 4)	exon (NM_207680, exon 2 of 4)	1226.0	NM_001284410	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	3.5	3.0	4.5	0.0	5.5	1.0
Merged-chr17-86437939-3	chr17	86437462	86438462	+	600.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 2 of 14)	intron (NM_011104, intron 2 of 14)	-150784.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	3.0	5.0	3.5	0.0	11.0	12.0
Merged-chr7-16297808-2	chr7	16297371	16298371	+	600.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11076.0	NM_001136471	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	0.0	1.0	0.0	1.0	3.5	0.0
Merged-chr4-128668816-2	chr4	128668316	128669316	+	600.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	14114.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54439993-2	chr11	54439493	54440493	+	600.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_173753, intron 1 of 17)	L1ME1|LINE|L1	1814.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55438724-2	chr12	55438224	55439224	+	600.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39899.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-76608639-3	chr2	76608152	76609152	+	600.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	39342.0	NM_011871	23992.0	Mm.277250	NM_011871	ENSMUSG00000002731	Prkra	AV120107|PRK|Pact|RAX|lear	protein kinase, interferon inducible double stranded RNA dependent activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135724319-3	chr1	135723806	135724806	+	600.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360782, intron 1 of 5)	intron (NM_001360782, intron 1 of 5)	4243.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16208281-2	chr19	16207781	16208781	+	600.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	B4A|SINE|B4	44183.0	NR_033228	595139.0	Mm.405662	NR_033228		E030024N20Rik	9030417F11Rik|Ppia-ps8	peptidylprolyl isomerase A pseudogene 8	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84235691-2	chr17	84235216	84236216	+	600.75	f0_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 31 of 37)	intron (NM_183021, intron 31 of 37)	-47769.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117049820-2	chr8	117049320	117050320	+	600.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 17 of 42)	intron (NM_029686, intron 17 of 42)	32629.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108334615-2	chr9	108334115	108335115	+	600.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_016802, intron 4 of 5)	B1_Mus1|SINE|Alu	-4465.0	NM_001329528	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61488807-2	chr18	61488307	61489307	+	600.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4200.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	4.0	6.5	4.0	4.0	7.0	9.0
Merged-chr10-62542617-3	chr10	62542116	62543116	+	600.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15171.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121340497-3	chr3	121339992	121340992	+	600.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155539, intron 2 of 2)	MLT1A0|LTR|ERVL-MaLR	48752.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	1.5	6.5	5.5	7.5	6.5	5.5
Merged-chr7-64217639-3	chr7	64217140	64218140	+	600.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_018752, exon 11 of 14)	exon (NM_018752, exon 11 of 14)	11834.0	NR_029805	387207.0		NR_029805	ENSMUSG00000065585	Mir211	Mirn211|mir-211|mmu-mir-211	microRNA 211	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35416679-3	chr2	35416183	35417183	+	600.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010283, intron 4 of 8)	intron (NM_010283, intron 4 of 8)	-19509.0	NM_001272040	74854.0	Mm.159338	NM_001080709	ENSMUSG00000079421	4930402F06Rik	-	RIKEN cDNA 4930402F06 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73777729-2	chr12	73777229	73778229	+	600.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001313977, exon 15 of 15)	3' UTR (NM_001313977, exon 15 of 15)	-123595.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30918395-2	chr5	30917895	30918895	+	600.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_133918, exon 4 of 8)	exon (NM_133918, exon 4 of 8)	-3164.0	NM_001310525	16548.0	Mm.22451	NM_008439	ENSMUSG00000029162	Khk	-	ketohexokinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-54725326-2	chr3	54724826	54725826	+	600.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358017, intron 22 of 24)	B1_Mus1|SINE|Alu	10038.0	NM_027148	69639.0	Mm.29253	NM_027148	ENSMUSG00000027752	Exosc8	2310032N20Rik|CIP3|mKIAA4013	exosome component 8	protein-coding	1.0	0.5	5.0	1.0	5.0	2.0
Merged-chr1-55210317-3	chr1	55209824	55210824	+	600.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356287, intron 1 of 7)	intron (NM_001356287, intron 1 of 7)	16458.0	NM_001356288	74013.0	Mm.292050	NM_028713	ENSMUSG00000025978	Rftn2	2700010E02Rik|3222401M22Rik	raftlin family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31400330-2	chr6	31399830	31400830	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013791, intron 1 of 17)	intron (NM_013791, intron 1 of 17)	1502.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-33323751-2	chr14	33323251	33324251	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 4 of 10)	intron (NM_153800, intron 4 of 10)	87273.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24957350-2	chr2	24956850	24957850	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026021, intron 4 of 5)	intron (NM_026021, intron 4 of 5)	-5072.0	NM_001355561	67228.0	Mm.389248	NM_026044	ENSMUSG00000026975	Dph7	2810443J12Rik|AW060693|Wdr85	diphthamine biosynethesis 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125357180-2	chr6	125356680	125357680	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011609, intron 2 of 9)	intron (NM_011609, intron 2 of 9)	7457.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	0.0	8.0	2.0	2.5	1.0	1.5
Merged-chr9-37237617-2	chr9	37237117	37238117	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145960, intron 8 of 18)	intron (NM_001145960, intron 8 of 18)	18121.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-46105890-2	chr10	46105390	46106390	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVK26-int|LTR|ERVK	-138858.0	NR_028274	100302593.0		NR_028274	ENSMUSG00000095118	Snord14d	Gm23710	small nucleolar RNA, C/D box 14D	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-84262515-2	chr7	84262015	84263015	+	600.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_007488, exon 17 of 19)	exon (NM_007488, exon 17 of 19)	-110622.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39779855-2	chr6	39779355	39780355	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31081.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-25500632-2	chr11	25500132	25501132	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	174525.0	NR_045853	71234.0	Mm.158627	NR_045853	ENSMUSG00000033015	4933427E13Rik	-	RIKEN cDNA 4933427E13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114933251-2	chr5	114932752	114933752	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359946, intron 3 of 4)	intron (NM_001359946, intron 3 of 4)	-8950.0	NM_028211	72357.0	Mm.292672	NM_028211	ENSMUSG00000029559	2210016L21Rik	-	RIKEN cDNA 2210016L21 gene	protein-coding	0.0	0.0	1.5	0.5	2.5	3.0
Merged-chr7-44930842-2	chr7	44930342	44931342	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ZP3AR|Satellite|Satellite	-1352.0	NM_001077264	11771.0	Mm.6877	NM_007458	ENSMUSG00000060279	Ap2a1	Adtaa	adaptor-related protein complex 2, alpha 1 subunit	protein-coding	13.0	28.0	7.5	5.0	7.0	7.5
Merged-chr3-138525523-2	chr3	138525023	138526023	+	600.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035481)	promoter-TSS (NR_035481)	-668.0	NM_007917	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116442588-2	chr11	116442088	116443088	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033267, intron 13 of 13)	intron (NM_001033267, intron 13 of 13)	8375.0	NR_003376	664849.0	Mm.258466	NR_003376		Gm7367	EG664849	1110014K08Rik pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77785779-2	chr18	77785279	77786279	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-8771.0	NM_013831	19201.0	Mm.57174	NM_013831	ENSMUSG00000025429	Pstpip2	MAYP|cmo	proline-serine-threonine phosphatase-interacting protein 2	protein-coding	0.0	0.0	1.0	0.0	0.0	1.5
Merged-chr15-50261701-2	chr15	50261201	50262201	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	627348.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	1.0	0.0	1.5	0.0	0.0	4.0
Merged-chr5-25530825-2	chr5	25530325	25531325	+	600.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027388, exon 1 of 1)	non-coding (NR_027388, exon 1 of 1)	807.0	NR_027388	73571.0	Mm.105263	NR_027388	ENSMUSG00000101856	1700096K18Rik	-	RIKEN cDNA 1700096K18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88573505-2	chr4	88573005	88574005	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1707.0	NM_206975	404549.0	Mm.377947	NM_206975	ENSMUSG00000095896	Ifna14	-	interferon alpha 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-109060700-2	chr9	109060200	109061200	+	600.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011637)	promoter-TSS (NM_011637)	-977.0	NM_011637	22040.0	Mm.439964	NM_011637	ENSMUSG00000049734	Trex1	AU041952	three prime repair exonuclease 1	protein-coding	3.5	4.0	3.0	2.0	4.0	1.0
Merged-chr10-95149171-2	chr10	95148671	95149671	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4-int|LTR|ERVL-MaLR	-3346.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83576986-2	chr6	83576486	83577486	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_078345, intron 3 of 7)	B1_Mus2|SINE|Alu	-4482.0	NM_001362080	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-66864660-2	chr1	66864160	66865160	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1351.0	NM_007381	11363.0	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-91624972-2	chr17	91624472	91625472	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-532170.0	NM_020252	18189.0	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28317591-2	chr17	28317091	28318091	+	600.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163820, exon 5 of 9)	exon (NM_001163820, exon 5 of 9)	4061.0	NM_001163820	72775.0	Mm.201859	NM_028348	ENSMUSG00000007570	Fance	2810451D06Rik|AI415634|AW209126	Fanconi anemia, complementation group E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101380596-2	chr15	101380096	101381096	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10471.0	NM_028770	74127.0	Mm.440055	NM_028770	ENSMUSG00000037185	Krt80	1200016G03Rik|2310041I20Rik|Kb20	keratin 80	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26902227-2	chr2	26901727	26902727	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009298, intron 1 of 4)	intron (NM_009298, intron 1 of 4)	660.0	NM_009298	20935.0	Mm.245577	NM_009298	ENSMUSG00000036160	Surf6	D2Wsu129e|Surf-6	surfeit gene 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117451897-2	chr8	117451397	117452397	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 14 of 20)	intron (NM_028941, intron 14 of 20)	-1126.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-31630080-2	chr18	31629580	31630580	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-4288.0	NM_001357554	269003.0	Mm.194538	NM_172965	ENSMUSG00000024260	Sap130	2610304F09Rik|6720406D06	Sin3A associated protein	protein-coding	0.0	1.5	5.0	0.0	3.5	10.0
Merged-chr17-57318265-2	chr17	57317765	57318765	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 23 of 25)	MTEa|LTR|ERVL-MaLR	39165.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180307592-2	chr2	180307092	180308092	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17713.0	NM_173031	271887.0	Mm.246640	NM_173031	ENSMUSG00000038980	Rbbp8nl	4732416F18	RBBP8 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-66145287-2	chr13	66144787	66145787	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31834.0	NM_001177832	628709.0	Mm.390595	NM_001177832	ENSMUSG00000095909	Gm10324	-	predicted gene 10324	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100037922-2	chr5	100037422	100038422	+	600.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_016690, exon 2 of 8)	exon (NM_016690, exon 2 of 8)	1300.0	NM_016690	50926.0	Mm.389579	NM_016690	ENSMUSG00000029328	Hnrnpdl	AA407431|AA959857|D5Ertd650e|D5Wsu145e|Hnrnpdl1|Hnrpdl|JKTBP|hnRNP DL|hnRNP-DL	heterogeneous nuclear ribonucleoprotein D-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39414140-2	chr18	39413640	39414640	+	600.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008173, exon 8 of 8)	3' UTR (NM_008173, exon 8 of 8)	73105.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.5	2.0	0.0	0.0	0.5	0.0
Merged-chr5-36815313-2	chr5	36814813	36815813	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008550, intron 11 of 18)	intron (NM_008550, intron 11 of 18)	15336.0	NM_008550	17160.0	Mm.761	NM_008550	ENSMUSG00000029119	Man2b2	mKIAA0935	mannosidase 2, alpha B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64963786-2	chr5	64963286	64964286	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-3690.0	NM_011604	21899.0	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59048218-2	chr15	59047718	59048718	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	33808.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24148562-2	chr10	24148062	24149062	+	600.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358563)	promoter-TSS (NM_001358563)	-727.0	NM_001358563	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134493613-2	chr1	134493113	134494113	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1047.0	NM_145510	98710.0	Mm.198119	NM_145510	ENSMUSG00000042229	Rabif	AI842864|AW549708|E130318E12Rik|MSS4|RASGFR3	RAB interacting factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50374873-3	chr6	50374355	50375355	+	600.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163645, intron 2 of 21)	intron (NM_001163645, intron 2 of 21)	7982.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	27.5	64.5	60.0	10.5	58.0	30.5
Merged-chr9-118736180-2	chr9	118735680	118736680	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	24488.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	2.5	0.0	1.0	0.5
Merged-chr5-136971016-3	chr5	136970529	136971529	+	600.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021719, intron 1 of 4)	intron (NM_021719, intron 1 of 4)	3160.0	NM_021719	60363.0	Mm.87202	NM_021719	ENSMUSG00000001739	Cldn15	2210009B08Rik|BB107105	claudin 15	protein-coding	1.5	0.0	0.5	1.5	6.0	2.0
Merged-chr3-95861563-2	chr3	95861063	95862063	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-5678.0	NR_151629	70767.0	Mm.279872	NM_027541	ENSMUSG00000015748	Prpf3	3632413F13Rik	pre-mRNA processing factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122157313-2	chr5	122156820	122157820	+	600.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013636)	promoter-TSS (NM_013636)	-959.0	NM_013636	19047.0	Mm.280784	NM_013636	ENSMUSG00000004455	Ppp1cc	PP-1G|PP1|dis2m1	protein phosphatase 1, catalytic subunit, gamma isoform	protein-coding	3.0	10.5	10.5	5.0	6.0	13.5
Merged-chr9-119578636-2	chr9	119578136	119579136	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021544, intron 1 of 27)	CpG	380.0	NM_021544	20271.0	Mm.103584	NM_021544	ENSMUSG00000032511	Scn5a	Nav1.5|Nav1.5c|SkM1|SkM2|mH1	sodium channel, voltage-gated, type V, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75628373-2	chr11	75627873	75628873	+	600.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008850, exon 12 of 12)	3' UTR (NM_008850, exon 12 of 12)	-2647.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	0.0	3.5	3.5	0.0	0.0	7.5
Merged-chr9-61040586-2	chr9	61040086	61041086	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23517.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83427284-2	chr11	83426784	83427784	+	600.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001013759, exon 2 of 6)	exon (NM_001013759, exon 2 of 6)	2237.0	NM_001013759	237891.0	Mm.340523	NM_001013759	ENSMUSG00000020686	Gas2l2	-	growth arrest-specific 2 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-119402916-2	chr6	119402416	119403416	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_197985, intron 1 of 7)	intron (NM_197985, intron 1 of 7)	-14182.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72559030-2	chr6	72558530	72559530	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042534, intron 8 of 9)	MER5A|DNA|hAT-Charlie	9383.0	NM_001271395	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142039788-2	chr7	142039288	142040288	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357705, intron 1 of 4)	intron (NM_001357705, intron 1 of 4)	21065.0	NM_001347560	101513.0	Mm.53259	NM_028308	ENSMUSG00000025147	Mob2	1110017M21Rik|2700078K21Rik|AI256456|Mmh	MOB kinase activator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50195458-2	chr17	50194958	50195958	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4961.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-52049146-2	chr12	52048646	52049646	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21083.0	NM_008159	14762.0	Mm.12890	NM_008159	ENSMUSG00000035148	Gpr33	-	G protein-coupled receptor 33	protein-coding	4.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-88181472-2	chr11	88180972	88181972	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172099, intron 2 of 9)	intron (NM_001172099, intron 2 of 9)	11907.0	NM_001172099	103841.0	Mm.374846	NM_198013	ENSMUSG00000018378	Cuedc1	AI841487|C330016O16Rik	CUE domain containing 1	protein-coding	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45224321-2	chr19	45223821	45224821	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10915.0	NM_010691	16814.0	Mm.116815	NM_010691	ENSMUSG00000025216	Lbx1	Lbx1h	ladybird homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112993431-1	chr5	112992931	112993931	+	600.5	f0_c57.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	22107.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84935025-1	chr1	84934525	84935525	+	600.5	f0_balb.idr	promoter-TSS (NM_027921)	promoter-TSS (NM_027921)	58.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36915218-2	chr17	36914719	36915719	+	600.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8573.0	NR_045439	73286.0	Mm.426884	NR_045439	ENSMUSG00000092239	1700031A10Rik	-	RIKEN cDNA 1700031A10 gene	ncRNA	5.0	2.5	4.0	3.5	6.0	4.0
Merged-chr19-4182762-2	chr19	4182262	4183262	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-7283.0	NM_134148	107239.0	Mm.482310	NM_134148	ENSMUSG00000075289	Carns1	AI790298|Atpgd1|mKIAA1394	carnosine synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43882996-2	chr7	43882496	43883496	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019928, intron 2 of 5)	intron (NM_019928, intron 2 of 5)	1824.0	NM_019928	56640.0	Mm.42080	NM_019928	ENSMUSG00000006948	Klk4	ESMP1|KLK-L1|PSTS|Prss17	kallikrein related-peptidase 4 (prostase, enamel matrix, prostate)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119807610-2	chr4	119807110	119808110	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7068.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	6.0	4.0	2.0	2.5	0.5	1.5
Merged-chr5-135449643-2	chr5	135449143	135450143	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 8 of 30)	intron (NM_146001, intron 8 of 30)	-55097.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-11846936-2	chr9	11846436	11847436	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	-942161.0	NM_001170787	244682.0	Mm.187021	NM_001033359	ENSMUSG00000039488	Cntn5	6720426O10Rik|A830025P08Rik|Gm507|NB-2	contactin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99444288-2	chr10	99443788	99444788	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-164883.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99449644-2	chr10	99449144	99450144	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	4.5SRNA|scRNA|scRNA	-159527.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-38036319-2	chr3	38035819	38036819	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137506.0	NR_040559	626410.0	Mm.389417	NR_040559	ENSMUSG00000106461	Gm20755	-	predicted gene, 20755	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142038075-3	chr7	142037597	142038597	+	600.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357705, intron 1 of 4)	intron (NM_001357705, intron 1 of 4)	22756.0	NM_001347560	101513.0	Mm.53259	NM_028308	ENSMUSG00000025147	Mob2	1110017M21Rik|2700078K21Rik|AI256456|Mmh	MOB kinase activator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19071710-2	chr7	19071210	19072210	+	600.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_031255, intron 5 of 5)	B2_Mm2|SINE|B2	-4490.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-169780131-1	chr2	169779631	169780631	+	600.333313	f0_c57.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	146485.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	1.0	3.5	1.0	6.0	3.5	0.5
Merged-chr7-16017627-1	chr7	16017127	16018127	+	600.333313	f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-18132.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	13.5	31.0	17.5	22.0	47.0	36.5
Merged-chr8-70798653-2	chr8	70798153	70799153	+	600.25	f1_balb.idr|f1_c57bl6.idr	TTS (NR_106099)	TTS (NR_106099)	518.0	NR_106099	102466823.0		NR_106099	ENSMUSG00000099031	Mir7240	Gm27487|mmu-mir-7240	microRNA 7240	ncRNA	0.5	0.0	7.0	0.0	0.0	3.5
Merged-chr9-66914533-2	chr9	66914033	66915033	+	600.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	5172.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0.0	19.5	15.0	7.5	12.0	13.0
Merged-chr5-137745207-2	chr5	137744707	137745707	+	600.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029805)	promoter-TSS (NM_029805)	-762.0	NM_023910	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80316253-2	chr10	80315753	80316753	+	600.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011789, exon 14 of 14)	3' UTR (NM_011789, exon 14 of 14)	4295.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-41954190-3	chr18	41953706	41954706	+	600.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3012.0	NM_029942	77619.0	Mm.30649	NM_029942	ENSMUSG00000056671	Prelid2	1700003A01Rik|C330008K14Rik	PRELI domain containing 2	protein-coding	16.0	10.0	5.5	9.0	3.0	6.0
Merged-chr9-108335902-2	chr9	108335402	108336402	+	600.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_016802, intron 5 of 5)	B1_Mur4|SINE|Alu	-3178.0	NM_001329528	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146449071-2	chr3	146448571	146449571	+	600.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-1396.0	NM_028836	74245.0	Mm.45396	NM_028836	ENSMUSG00000028189	Ctbs	2210401K11Rik|CTB	chitobiase, di-N-acetyl-	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45722268-2	chr7	45721768	45722768	+	600.099976	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033170, exon 1 of 5)	exon (NM_001033170, exon 1 of 5)	1048.0	NM_001033170	73813.0	Mm.322591	NM_001033170	ENSMUSG00000054161	Fam83e	4930403C10Rik	family with sequence similarity 83, member E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115504388-2	chr5	115503889	115504889	+	600.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-2287.0	NM_011223	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	7.5	3.0	1.5	3.0	3.0	4.5
Merged-chr2-173768920-1	chr2	173768420	173769420	+	600.0	f0_balb.idr	intron (NM_019806, intron 2 of 5)	intron (NM_019806, intron 2 of 5)	31349.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-177799094-2	chr1	177798594	177799594	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-2585.0	NM_007422	11566.0	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37011304-2	chr1	37010804	37011804	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-71777.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46452764-2	chr18	46452264	46453264	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13052.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	1.5	6.5	8.0	1.0	11.0	6.5
Merged-chr9-3008965-1	chr9	3008465	3009465	+	600.0	f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	29778.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27328732-2	chr7	27328247	27329247	+	600.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175641, exon 9 of 33)	exon (NM_175641, exon 9 of 33)	4901.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	9.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-142707996-2	chr6	142707496	142708496	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5722.0	NM_001310143	20928.0	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-3540066-2	chr13	3539566	3540566	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008112, intron 1 of 10)	intron (NM_008112, intron 1 of 10)	1991.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-143051510-2	chr6	143051010	143052010	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362117, intron 11 of 26)	intron (NM_001362117, intron 11 of 26)	48642.0	NM_001362118	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80098731-2	chr15	80098231	80099231	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207708, intron 1 of 3)	intron (NM_207708, intron 1 of 3)	7397.0	NM_207708	20972.0	Mm.230301	NM_009303	ENSMUSG00000022415	Syngr1	R75468|Syngr1b|p29	synaptogyrin 1	protein-coding	0.0	2.0	1.0	0.0	0.0	0.0
Merged-chr19-38023518-1	chr19	38023018	38024018	+	600.0	f1_balb.idr	intron (NM_001302140, intron 2 of 53)	intron (NM_001302140, intron 2 of 53)	20059.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	62.5	232.0	87.0	120.0	164.0	127.5
Merged-chr10-86976573-2	chr10	86976073	86977073	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 5 of 68)	intron (NM_138673, intron 5 of 68)	31369.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164920766-2	chr2	164920266	164921266	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9016.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	3.5	3.0	1.0	0.0	0.5	3.0
Merged-chr17-47745079-2	chr17	47744579	47745579	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	7148.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.0	0.0	0.0	0.0	1.0	0.5
Merged-chr2-45194141-1	chr2	45193641	45194641	+	600.0	f0_balb.idr	Intergenic	Intergenic	-76699.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-24164228-1	chr19	24163728	24164728	+	600.0	f1_c57bl6.idr	intron (NM_011597, intron 1 of 22)	intron (NM_011597, intron 1 of 22)	9961.0	NM_001198985	21873.0	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	5.5	4.5	0.5	0.5	3.0	0.5
Merged-chr17-47216751-2	chr17	47216251	47217251	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 3 of 19)	intron (NM_001097623, intron 3 of 19)	-13479.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8848748-1	chr10	8848248	8849248	+	600.0	f1_balb.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	37322.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	34.0	119.0	90.0	15.5	125.0	80.0
Merged-chr10-93375748-1	chr10	93375248	93376248	+	600.0	f1_c57bl6.idr	Intergenic	Intergenic	39537.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	12.5	11.5	11.0	52.0	61.0	29.5
Merged-chr2-70963057-1	chr2	70962557	70963557	+	600.0	f0_c57.idr	Intergenic	Intergenic	55317.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128396983-2	chr2	128396483	128397483	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	32368.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0.0	4.5	0.5	2.5	0.0	1.0
Merged-chr3-35886671-2	chr3	35886171	35887171	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43403.0	NM_033623	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100120403-2	chr12	100119903	100120903	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008947, intron 8 of 9)	B4|SINE|B4	8072.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112268101-1	chr5	112267601	112268601	+	600.0	f1_c57bl6.idr	intron (NM_001312893, intron 5 of 5)	intron (NM_001312893, intron 5 of 5)	-8590.0	NM_001326590	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	1.0	0.0	6.0	0.0	1.0	0.0
Merged-chr1-39893329-1	chr1	39892829	39893829	+	600.0	f0_balb.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-7584.0	NM_001252202	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131058806-2	chr1	131058306	131059306	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	38961.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	2.5	6.0	5.0	0.0	9.0	0.5
Merged-chr3-96241623-2	chr3	96241123	96242123	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1249.0	NM_178212	319192.0	Mm.5220	NM_178212	ENSMUSG00000063954	Hist2h2aa2	H2a-614|H2a-615	histone cluster 2, H2aa2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23305430-2	chr16	23304930	23305930	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252506, intron 1 of 6)	intron (NM_001252506, intron 1 of 6)	14960.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89263085-2	chr6	89262585	89263585	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	22640.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138251591-2	chr4	138251091	138252091	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001099631, intron 1 of 9)	intron (NM_001099631, intron 1 of 9)	1180.0	NM_001099631	230863.0	Mm.482408	NM_001099631	ENSMUSG00000045349	Sh2d5	BC036961	SH2 domain containing 5	protein-coding	1.5	4.0	0.0	5.0	2.5	0.0
Merged-chr12-73560260-2	chr12	73559760	73560760	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11777.0	NR_044985	73644.0	Mm.369885	NR_044985	ENSMUSG00000113800	2210039B01Rik	-	RIKEN cDNA 2210039B01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-124025428-1	chr9	124024928	124025928	+	600.0	f0_balb.idr	intron (NM_009914, intron 1 of 1)	intron (NM_009914, intron 1 of 1)	3457.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-79290006-1	chr14	79289506	79290506	+	600.0	f1_c57bl6.idr	intron (NM_025427, intron 4 of 4)	intron (NM_025427, intron 4 of 4)	11629.0	NM_025427	66214.0	Mm.29811	NM_025427	ENSMUSG00000022018	Rgcc	1190002H23Rik|Rgc-32|Rgc32	regulator of cell cycle	protein-coding	0.5	2.0	2.5	0.0	3.0	1.5
Merged-chr13-36696503-1	chr13	36696003	36697003	+	600.0	f0_c57.idr	Intergenic	Intergenic	37974.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	0.0	0.0	0.0	1.5	0.0	0.0
Merged-chr3-96277543-2	chr3	96277043	96278043	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7843.0	NM_175666	319189.0	Mm.297655	NM_175666	ENSMUSG00000105827	Hist2h2bb	H2b-616	histone cluster 2, H2bb	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122533185-2	chr14	122532685	122533685	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 1 of 24)	B2_Mm1t|SINE|B2	-1143.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36110962-2	chr17	36110464	36111464	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271005, intron 2 of 6)	CpG	712.0	NM_001271005	667803.0	Mm.477808	NM_001271005		H2-T-ps	C920025E04Rik|H2-T11	histocompatibility 2, T region locus, pseudogene	protein-coding	2.5	5.0	5.0	23.0	61.5	32.5
Merged-chr4-102621284-2	chr4	102620784	102621784	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	31441.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8891325-2	chr10	8890825	8891825	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5255.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	2.0	2.5
Merged-chr11-88993277-1	chr11	88992777	88993777	+	600.0	f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6126.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	1.0	12.0	1.0	9.0	3.0	7.5
Merged-chr14-118621269-1	chr14	118620769	118621769	+	600.0	f0_balb.idr	intron (NM_001163676, intron 7 of 29)	RLTR22_Mur|LTR|ERVK	-28797.0	NR_105815	102465208.0		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	1.0	10.0	8.0	1.0	2.5	5.0
Merged-chr11-119254516-2	chr11	119254016	119255016	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175430, intron 16 of 18)	intron (NM_175430, intron 16 of 18)	-13447.0	NM_001159324	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32236209-2	chr18	32235709	32236709	+	600.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011946, exon 17 of 17)	3' UTR (NM_011946, exon 17 of 17)	-4122.0	NM_133658	13872.0	Mm.282335	NM_133658	ENSMUSG00000024382	Ercc3	BTF2 p89|Ercc-3|XPB	excision repair cross-complementing rodent repair deficiency, complementation group 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43251489-1	chr4	43250989	43251989	+	600.0	f1_c57bl6.idr	intron (NM_001081413, intron 26 of 39)	intron (NM_001081413, intron 26 of 39)	-15670.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	3.5	16.0	7.0	4.5	42.5	12.5
Merged-chr16-57897561-2	chr16	57897061	57898061	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-142824.0	NM_007739	12837.0	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103188308-2	chr14	103187808	103188808	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207215, intron 49 of 84)	intron (NM_207215, intron 49 of 84)	-88742.0	NM_001360342	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88507593-2	chr15	88507093	88508093	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-92709.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74312440-2	chr1	74311940	74312940	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039509, intron 2 of 9)	MIR|SINE|MIR	-8104.0	NM_027154	69660.0	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78790838-1	chr15	78790338	78791338	+	600.0	f1_balb.idr	intron (NM_130859, intron 8 of 20)	intron (NM_130859, intron 8 of 20)	12204.0	NM_130859	105844.0	Mm.17629	NM_130859	ENSMUSG00000033170	Card10	AI449026|Bimp1|Carma3	caspase recruitment domain family, member 10	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr4-55823747-1	chr4	55823247	55824247	+	600.0	f0_balb.idr	Intergenic	B4|SINE|B4	-291272.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70570973-2	chr17	70570473	70571473	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128181, intron 1 of 9)	intron (NM_001128181, intron 1 of 9)	9226.0	NM_001128181	224997.0	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	DLG associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35830297-2	chr18	35829797	35830797	+	600.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357458)	promoter-TSS (NM_001357458)	-17.0	NM_001357458	67393.0	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding	3.5	1.5	0.0	3.5	1.5	0.0
Merged-chr11-70718032-1	chr11	70717532	70718532	+	600.0	f1_c57bl6.idr	intron (NM_153103, intron 17 of 22)	intron (NM_153103, intron 17 of 22)	12042.0	NR_105890	102465557.0		NR_105890	ENSMUSG00000105932	Mir6925	mmu-mir-6925	microRNA 6925	ncRNA	0.5	10.0	0.0	4.0	2.0	0.0
Merged-chr12-24973018-1	chr12	24972518	24973518	+	600.0	f1_c57bl6.idr	Intergenic	Intergenic	-1914.0	NM_001081378	77480.0	Mm.250641	NM_001081378	ENSMUSG00000036333	Kidins220	3110039L19Rik|AI194387|AI316525|C330002I19Rik|mKIAA1250	kinase D-interacting substrate 220	protein-coding	10.5	0.0	4.5	0.0	0.5	4.0
Merged-chr17-80555907-2	chr17	80555407	80556407	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360144, intron 3 of 9)	B3|SINE|B2	7927.0	NM_001033443	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-66908395-1	chr17	66907895	66908895	+	600.0	f1_balb.idr	intron (NM_008984, intron 13 of 30)	intron (NM_008984, intron 13 of 30)	117840.0	NR_049205	100885844.0		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	1.0	7.0	2.0	0.0	5.5	0.5
Merged-chr11-58328946-1	chr11	58328446	58329446	+	600.0	f1_c57bl6.idr	intron (NM_001256520, intron 1 of 2)	URR1A|DNA|hAT-Charlie	1393.0	NM_001256520	319475.0	Mm.72124	NM_178761	ENSMUSG00000049755	Zfp672	4930488P06Rik|4930511N19Rik|Znf672	zinc finger protein 672	protein-coding	15.0	40.5	25.5	5.0	25.0	12.0
Merged-chr16-76763518-2	chr16	76763018	76764018	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155453, intron 1 of 3)	intron (NR_155453, intron 1 of 3)	15574.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-129622373-2	chr3	129621874	129622874	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_130450, intron 3 of 4)	B3|SINE|B2	-89986.0	NR_153368	102639747.0	Mm.393257	NR_153368		Gm35986	-	predicted gene, 35986	ncRNA	2.5	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85522884-2	chr11	85522384	85523384	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 16 of 25)	intron (NM_138681, intron 16 of 25)	169720.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34832708-2	chr11	34832208	34833208	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027411, intron 1 of 11)	Lx5|LINE|L1	933.0	NM_027411	70385.0	Mm.194368	NM_027411	ENSMUSG00000069910	Spdl1	1700018I02Rik|2600001J17Rik|2810049B11Rik|AA409762|Ccdc99	spindle apparatus coiled-coil protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87213069-2	chr1	87212569	87213569	+	600.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347083)	promoter-TSS (NM_001347083)	-842.0	NM_001347083	26987.0	Mm.227183	NM_023314	ENSMUSG00000026254	Eif4e2	2700069E09Rik|AI036339|AV129531|D0H0S6743E|Eif4el3	eukaryotic translation initiation factor 4E member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45128093-2	chr7	45127593	45128593	+	600.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_000002)	promoter-TSS (NR_000002)	-630.0	NR_000002	27209.0		NR_000002	ENSMUSG00000065219	Snord32a	Rnu32|Rnu32a|U32|U32A	small nucleolar RNA, C/D box 32A	snoRNA	0.0	12.0	14.0	3.5	30.5	12.5
Merged-chr7-110985880-2	chr7	110985380	110986380	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3419.0	NM_194464	17540.0	Mm.250023	NM_010826	ENSMUSG00000005611	Mrvi1	BB115629|Irag|Ris1	MRV integration site 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-47951383-2	chr3	47950883	47951883	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75376.0	NR_040408	666202.0	Mm.465057	NR_040408	ENSMUSG00000103257	Gm7977	EG666202	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide pseudogene	pseudo	2.0	8.5	7.5	11.5	6.0	7.5
Merged-chr18-11864630-2	chr18	11864175	11865175	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022021, intron 1 of 8)	intron (NM_022021, intron 1 of 8)	-24237.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	7.5	1.0	5.0	3.5	4.0	6.5
Merged-chr6-28460753-3	chr6	28460269	28461269	+	600.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11429.0	NM_001159925	18506.0	Mm.8026	NM_011038	ENSMUSG00000029706	Pax4	Pax-4	paired box 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70438097-3	chr11	70437608	70438608	+	600.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106064)	promoter-TSS (NR_106064)	-147.0	NR_106064	102465670.0		NR_106064	ENSMUSG00000099109	Mir7115	Gm27902|mmu-mir-7115	microRNA 7115	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108499571-2	chr9	108499071	108500071	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168373, intron 23 of 26)	intron (NM_001168373, intron 23 of 26)	-8434.0	NM_133794	97541.0	Mm.272427	NM_133794	ENSMUSG00000032604	Qars	1110018N24Rik|1200016L19Rik|C80286|GLNRS	glutaminyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57499376-1	chr6	57498876	57499876	+	600.0	f0_balb.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	36050.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133928174-1	chr4	133927674	133928674	+	600.0	f1_balb.idr	Intergenic	RLTR16|LTR|ERVK	39817.0	NM_016957	15331.0	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	0.5	1.0	3.0	4.5	0.0	9.0
Merged-chr17-86658585-2	chr17	86658085	86659085	+	600.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011104)	TTS (NM_011104)	-95279.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr12-36070935-2	chr12	36070435	36071435	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-19444.0	NR_003649	432649.0	Mm.347860	NM_001014396	ENSMUSG00000059301	Gm5434	EG432649	ubiquitin-conjugating enzyme E2F (putative) pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45175755-2	chr7	45175255	45176255	+	600.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001195255)	TTS (NM_001195255)	2452.0	NR_106022	102465638.0		NR_106022	ENSMUSG00000106470	Mir7055	mmu-mir-7055	microRNA 7055	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113837924-1	chr5	113837424	113838424	+	600.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-7423.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-65243899-2	chr13	65243399	65244399	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34955.0	NM_178364	170936.0	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding	0.0	0.0	3.0	0.0	0.0	2.0
Merged-chr6-54925974-2	chr6	54925474	54926474	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171007, intron 11 of 11)	intron (NM_001171007, intron 11 of 11)	45687.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173414046-1	chr1	173413546	173414546	+	600.0	f1_c57bl6.idr	Intergenic	Intergenic	-6558.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	7.5	25.5	10.5	18.0	6.0	10.5
Merged-chr16-91836409-2	chr16	91835909	91836909	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 16 of 28)	intron (NM_001110275, intron 16 of 28)	95221.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117828551-2	chr10	117828051	117829051	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	17423.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53272800-2	chr18	53272300	53273300	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	27138.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32497902-1	chr16	32497402	32498402	+	600.0	f1_balb.idr	intron (NM_199309, intron 3 of 8)	intron (NM_199309, intron 3 of 8)	1621.0	NM_199309	245308.0	Mm.76859	NM_199309	ENSMUSG00000052363	Zdhhc19	Gm1744|Gm616	zinc finger, DHHC domain containing 19	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr9-78259915-1	chr9	78259415	78260415	+	600.0	f1_balb.idr	intron (NM_001243092, intron 2 of 6)	intron (NM_001243092, intron 2 of 6)	2786.0	NM_001243092	100042295.0	Mm.197422	NM_001243092	ENSMUSG00000111709	Gm3776	-	predicted gene 3776	protein-coding	0.0	0.0	0.0	0.0	5.0	2.5
Merged-chr15-99946516-2	chr15	99946016	99947016	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14858.0	NM_028180	72277.0	Mm.272766	NM_028180	ENSMUSG00000045350	1700030F18Rik	FAM186A	RIKEN cDNA 1700030F18 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101946997-1	chr5	101946497	101947497	+	600.0	f1_balb.idr	intron (NM_172882, intron 10 of 66)	RSINE1|SINE|B4	122924.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	44.5	17.0	8.5	9.5	12.0	11.5
Merged-chr11-69966865-2	chr11	69966365	69967365	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001193619, intron 2 of 4)	intron (NM_001193619, intron 2 of 4)	1444.0	NM_016887	53624.0	Mm.281896	NM_016887	ENSMUSG00000018569	Cldn7	-	claudin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84510450-2	chr17	84509950	84510950	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1445.0	NM_001357986	213556.0	Mm.215159	NM_177606	ENSMUSG00000040852	Plekhh2	AI256725|E030001K05|mKIAA2028	pleckstrin homology domain containing, family H (with MyTH4 domain) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-83215355-2	chr10	83214855	83215855	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	122462.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24688435-2	chr13	24687935	24688935	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080381, intron 8 of 14)	MTC|LTR|ERVL-MaLR	49787.0	NM_029679	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27695434-2	chr3	27694934	27695934	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 1 of 26)	intron (NM_001356953, intron 1 of 26)	15018.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72086699-2	chr5	72086199	72087199	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008069, intron 5 of 8)	RMER1B|Other|Other	81490.0	NM_001356611	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134119929-1	chr4	134119429	134120429	+	600.0	f0_c57.idr	intron (NM_026257, intron 8 of 14)	intron (NM_026257, intron 8 of 14)	8824.0	NM_080559	73723.0	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	0.0	13.5	14.0	0.0	2.0	4.5
Merged-chr1-118320883-1	chr1	118320383	118321383	+	600.0	f0_c57.idr	promoter-TSS (NM_026472)	promoter-TSS (NM_026472)	-960.0	NM_026472	67949.0	Mm.280311	NM_026472	ENSMUSG00000026377	Nifk	AI852665|C130020J04Rik|Mki67ip	nucleolar protein interacting with the FHA domain of MKI67	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-97823205-1	chr16	97822705	97823705	+	600.0	f1_c57bl6.idr	intron (NM_001359078, intron 5 of 22)	intron (NM_001359078, intron 5 of 22)	28022.0	NM_144789	114604.0	Mm.328741	NM_144789	ENSMUSG00000014039	Prdm15	C21orf83|E130018M06Rik|ORF62|Zfp298	PR domain containing 15	protein-coding	20.5	2.5	7.0	3.0	0.5	4.5
Merged-chr13-31559276-1	chr13	31558776	31559776	+	600.0	f0_balb.idr	exon (NM_008239, exon 1 of 1)	exon (NM_008239, exon 1 of 1)	1106.0	NM_008239	15220.0	Mm.44235	NM_008239	ENSMUSG00000038415	Foxq1	HFH-1|Hfh1|Hfh1l|sa	forkhead box Q1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124501033-2	chr5	124500533	124501533	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021430, intron 6 of 6)	intron (NM_021430, intron 6 of 6)	17878.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140605315-2	chr5	140604815	140605815	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2026.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91735379-2	chr6	91734879	91735879	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 6 of 14)	intron (NM_009320, intron 6 of 14)	51312.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66008066-2	chr5	66007566	66008566	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3781.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98968195-2	chr13	98967690	98968690	+	600.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	16375.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	2.0	0.0	7.0	5.5	18.0	3.5
Merged-chr16-91862353-3	chr16	91861842	91862842	+	599.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 25 of 28)	intron (NM_001110275, intron 25 of 28)	69288.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167699660-2	chr2	167699160	167700160	+	599.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8483.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4119646-2	chr19	4119165	4120165	+	599.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_016666, intron 2 of 6)	B1_Mur3|SINE|Alu	1910.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95679447-2	chr3	95678947	95679947	+	599.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301705, intron 14 of 17)	intron (NM_001301705, intron 14 of 17)	8470.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112614860-2	chr12	112614360	112615360	+	599.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_198411, intron 22 of 22)	intron (NM_198411, intron 22 of 22)	-5187.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-78734863-2	chr14	78734363	78735363	+	599.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2134.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94523838-2	chr10	94523338	94524338	+	599.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_172051, intron 1 of 3)	intron (NM_172051, intron 1 of 3)	8981.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122987163-2	chr10	122986663	122987663	+	599.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1439.0	NR_029527	387251.0		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111448659-2	chr12	111448159	111449159	+	599.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_009396, intron 6 of 11)	intron (NM_009396, intron 6 of 11)	5998.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110429365-2	chr5	110428865	110429865	+	599.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001317042)	TTS (NM_001317042)	19138.0	NM_001317042	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-82507036-2	chr4	82506536	82507536	+	599.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_137202)	promoter-TSS (NR_137202)	-953.0	NR_137202	102635783.0	Mm.41666	NR_137202		Gm11266	-	predicted gene 11266	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143487199-2	chr5	143486699	143487699	+	599.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_144915, exon 8 of 15)	exon (NM_144915, exon 8 of 15)	22706.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143581212-2	chr5	143580712	143581712	+	599.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	32506.0	NM_026050	67238.0	Mm.383219	NM_026050	ENSMUSG00000083012	Fam220a	1500026F15Rik|2810453I06Rik|AW047776|Acpin1|Sipar	family with sequence similarity 220, member A	protein-coding	0.0	0.0	0.5	0.0	1.0	0.0
Merged-chr10-79962646-2	chr10	79962146	79963146	+	599.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175450, intron 2 of 9)	intron (NM_175450, intron 2 of 9)	2494.0	NM_175450	216156.0	Mm.35828	NM_175450	ENSMUSG00000035754	Wdr18	2310012I10Rik|AU044733|AW122032	WD repeat domain 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-130273445-2	chr7	130272945	130273945	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6637.0	NM_201601	14183.0	Mm.16340	NM_010207	ENSMUSG00000030849	Fgfr2	AU043015|AW556123|Bek|Fgfr-2|Fgfr-7|Fgfr7|KGFR|KGFRTr|svs	fibroblast growth factor receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25541331-2	chr14	25540831	25541831	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 3 of 23)	intron (NM_183208, intron 3 of 23)	6892.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30337180-2	chr2	30336680	30337680	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198304, intron 33 of 43)	intron (NM_198304, intron 33 of 43)	22136.0	NM_139302	227700.0	Mm.33343	NM_139302	ENSMUSG00000026860	Sh3glb2	SPAS-1	SH3-domain GRB2-like endophilin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96274226-2	chr3	96273726	96274726	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4526.0	NM_175666	319189.0	Mm.297655	NM_175666	ENSMUSG00000105827	Hist2h2bb	H2b-616	histone cluster 2, H2bb	protein-coding	0.0	0.0	0.0	1.5	8.5	3.0
Merged-chr5-28166838-2	chr5	28166333	28167333	+	599.5	f0_balb.idr|f1_c57bl6.idr	exon (NM_010134, exon 1 of 2)	exon (NM_010134, exon 1 of 2)	1137.0	NM_010134	13799.0	Mm.4298	NM_010134	ENSMUSG00000039095	En2	BB131122|En-2	engrailed 2	protein-coding	0.0	2.0	1.0	0.0	3.5	0.0
Merged-chr7-66300982-2	chr7	66300482	66301482	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 11 of 33)	intron (NM_146191, intron 11 of 33)	80742.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	0.5	1.5	1.0	0.5	1.5	1.0
Merged-chr8-46929850-2	chr8	46929350	46930350	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-57037.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27163119-2	chr7	27162619	27163619	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357767, intron 1 of 4)	intron (NM_001357767, intron 1 of 4)	2609.0	NM_001357767	112406.0	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37462935-2	chr9	37462408	37463408	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26413.0	NM_146222	235184.0	Mm.127892	NM_146222	ENSMUSG00000042138	Msantd2	2810450G17Rik|9530092B10Rik	Myb/SANT-like DNA-binding domain containing 2	protein-coding	0.0	0.0	0.0	1.0	3.0	0.0
Merged-chr12-25282405-2	chr12	25281905	25282905	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	153231.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	11.0	13.0	9.5	12.5	9.5	4.0
Merged-chr11-68951863-2	chr11	68951363	68952363	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177566, intron 5 of 15)	intron (NM_177566, intron 5 of 15)	4995.0	NM_177566	442801.0	Mm.376147	NM_177566	ENSMUSG00000052921	Arhgef15	D130071N09|D530030K12Rik|E5	Rho guanine nucleotide exchange factor (GEF) 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-117681627-2	chr12	117681102	117682102	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 11 of 27)	L2c|LINE|L2	-162259.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	1.5	11.5	5.5	3.0	6.0	3.0
Merged-chr16-96210097-2	chr16	96209597	96210597	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015825, intron 2 of 7)	RMER19B|LTR|ERVK	9627.0	NM_015825	50795.0	Mm.28638	NM_015825	ENSMUSG00000040666	Sh3bgr	5430437A18Rik	SH3-binding domain glutamic acid-rich protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102494963-2	chr4	102494463	102495463	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177983, intron 2 of 5)	intron (NM_001177983, intron 2 of 5)	-75097.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85543717-2	chr12	85543217	85544217	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55388.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63659295-2	chr4	63658795	63659795	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24874.0	NR_151544	102632940.0	Mm.399154	NR_151544	ENSMUSG00000086817	Gm11482	-	predicted gene 11482	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73304089-2	chr12	73303589	73304589	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037717, intron 3 of 15)	intron (NM_001037717, intron 3 of 15)	17241.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16101313-2	chr7	16100813	16101813	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025898, intron 1 of 10)	intron (NM_025898, intron 1 of 10)	2733.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	2.5	8.5	9.0	4.0	3.5	1.5
Merged-chr7-19460807-2	chr7	19460307	19461307	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	U1|snRNA|snRNA	-2313.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29620761-2	chr2	29620261	29621261	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	1041.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-20965484-2	chr5	20964984	20965984	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13662.0	NM_001080977	242860.0	Mm.254286	NM_001080977	ENSMUSG00000039968	Rsbn1l	8430412F05Rik|AI447441|C330002G24Rik	round spermatid basic protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118795064-2	chr9	118794564	118795564	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 3 of 13)	intron (NM_001113514, intron 3 of 13)	83372.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118460497-2	chr11	118459997	118460997	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5502.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115068300-2	chr11	115067800	115068800	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6261.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156294362-2	chr2	156293862	156294862	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172674, intron 13 of 17)	intron (NM_172674, intron 13 of 17)	-18111.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	0.0	7.0	3.0	0.0	0.0	4.5
Merged-chr18-25880374-2	chr18	25879874	25880874	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126217.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55098533-1	chr4	55098033	55099033	+	599.5	f0_balb.idr	Intergenic	Intergenic	150588.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	0.0	0.0	1.0	0.0	1.5	0.0
Merged-chr2-165399714-2	chr2	165399262	165400262	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029021, intron 1 of 2)	intron (NM_029021, intron 1 of 2)	632.0	NM_029021	74614.0	Mm.72179	NM_029021	ENSMUSG00000027670	Ocstamp	4833422F24Rik|OC-STAMP	osteoclast stimulatory transmembrane protein	protein-coding	0.5	0.0	2.5	0.0	2.0	6.5
Merged-chr15-44621095-2	chr15	44620595	44621595	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019480, intron 1 of 6)	intron (NM_019480, intron 1 of 6)	1454.0	NM_019480	55960.0	Mm.287896	NM_019480	ENSMUSG00000022339	Ebag9	AI835379|Rcas1	estrogen receptor-binding fragment-associated gene 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81261851-2	chr10	81261351	81262351	+	599.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001285854, exon 10 of 13)	exon (NM_001285854, exon 10 of 13)	4552.0	NM_001285853	17179.0	Mm.2918	NM_010768	ENSMUSG00000004933	Matk	CHK|HYL|Ntk|p56ntk	megakaryocyte-associated tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3355780-2	chr8	3355280	3356280	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033378, intron 1 of 10)	intron (NM_001033378, intron 1 of 10)	2365.0	NM_001033378	319493.0	Mm.234565	NM_001033378	ENSMUSG00000074497	A430078G23Rik	-	RIKEN cDNA A430078G23 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132617427-2	chr4	132616941	132617941	+	599.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-21605.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	59.0	74.0	73.5	77.0	85.0	80.0
Merged-chr17-27588624-1	chr17	27588124	27589124	+	599.5	f1_c57bl6.idr	intron (NM_001291046, intron 2 of 4)	intron (NM_001291046, intron 2 of 4)	-22897.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	23.0	36.5	35.5	0.0	16.0	23.5
Merged-chr6-88905747-2	chr6	88905247	88906247	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011906, intron 1 of 11)	L2a|LINE|L2	3496.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37477867-2	chr13	37477358	37478358	+	599.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	132513.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr2-60763161-2	chr2	60762661	60763661	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 7 of 14)	intron (NM_001141932, intron 7 of 14)	-40558.0	NM_001159564	16420.0	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27239078-2	chr3	27238578	27239578	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 3 of 4)	MTD|LTR|ERVL-MaLR	56074.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131542125-2	chr2	131541625	131542625	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	20160.0	NM_013460	11550.0	Mm.389380	NM_013460	ENSMUSG00000027335	Adra1d	Adra-1|Adra1|Adra1a|Gpcr8|Spr8|[a]1d|alpha1D-AR	adrenergic receptor, alpha 1d	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26560868-2	chr2	26560368	26561368	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20188.0	NM_178444	353156.0	Mm.268933	NM_178444	ENSMUSG00000026921	Egfl7	VE-statin|Zneu1	EGF-like domain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62778249-2	chr4	62777749	62778749	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	104275.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20538843-2	chr16	20538343	20539343	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302970, intron 2 of 10)	intron (NM_001302970, intron 2 of 10)	3363.0	NM_009679	11773.0	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127061765-2	chr10	127061265	127062265	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-1581.0	NM_001033262	216438.0	Mm.37892	NM_001033262	ENSMUSG00000040502	March9	AI608492|BC019560	membrane-associated ring finger (C3HC4) 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19596203-2	chr10	19595703	19596703	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010511, intron 1 of 6)	ORR1B1|LTR|ERVL-MaLR	4254.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35019573-2	chr9	35019073	35020073	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190912, intron 9 of 15)	intron (NM_001190912, intron 9 of 15)	-97155.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	1.5	0.0	2.0	0.0	0.0	0.0
Merged-chr19-4129099-2	chr19	4128599	4129599	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025889, intron 5 of 6)	intron (NM_025889, intron 5 of 6)	3139.0	NM_025889	66990.0	Mm.276255	NM_025889		Tmem134	2410001H17Rik|AI463452	transmembrane protein 134	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-35287623-2	chr6	35287123	35288123	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172892, intron 4 of 15)	intron (NM_172892, intron 4 of 15)	20503.0	NM_172892	243755.0	Mm.23666	NM_172892	ENSMUSG00000029843	Slc13a4	9630060C05Rik|SUT-1|SUT1	solute carrier family 13 (sodium/sulfate symporters), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-46669940-2	chr13	46669440	46670440	+	599.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033192, exon 1 of 5)	exon (NM_001033192, exon 1 of 5)	418.0	NM_001033192	97863.0	Mm.275934	NM_001033192	ENSMUSG00000069237	Fam8a1	C78339	family with sequence similarity 8, member A1	protein-coding	0.5	28.0	4.0	1.0	13.5	9.5
Merged-chr18-6151049-2	chr18	6150550	6151550	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14952.0	NM_001039692	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	6.5	2.5	12.5	5.0	6.0	4.0
Merged-chr12-30599129-2	chr12	30598629	30599629	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14686.0	NM_172049	211986.0	Mm.34035	NM_172049	ENSMUSG00000043061	Tmem18	BC024093	transmembrane protein 18	protein-coding	0.0	8.0	4.0	6.5	5.0	0.5
Merged-chr15-79148873-2	chr15	79148373	79149373	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027231, intron 3 of 4)	intron (NM_027231, intron 3 of 4)	7548.0	NM_027231	69833.0	Mm.279861	NM_027231	ENSMUSG00000033020	Polr2f	1810060D16Rik|RPB6	polymerase (RNA) II (DNA directed) polypeptide F	protein-coding	1.0	0.0	1.0	0.0	0.0	1.5
Merged-chr10-121545143-2	chr10	121544643	121545643	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41651.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	6.5	0.0	0.0	0.0	1.5	2.0
Merged-chr6-47783872-2	chr6	47783372	47784372	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19780.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106100849-2	chr1	106100349	106101349	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70675.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97438394-2	chr6	97437894	97438894	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	B4|SINE|B4	20892.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-116634839-2	chr8	116634339	116635339	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 1 of 6)	RLTR17B_Mm|LTR|ERVK	98152.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69114310-2	chr3	69113810	69114810	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008467, intron 1 of 16)	intron (NM_008467, intron 1 of 16)	12782.0	NM_008467	16649.0	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	9.5	0.5	18.5	4.0	28.0	6.5
Merged-chr8-117403366-2	chr8	117402866	117403866	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 3 of 20)	RMER30|DNA|hAT-Charlie	-49657.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39762552-2	chr1	39762052	39763052	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41563.0	NM_001145660	619289.0	Mm.334107	NM_001145660	ENSMUSG00000057173	Rfx8	4933400N17Rik	regulatory factor X 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-42451182-2	chr5	42450682	42451682	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	383222.0	NR_131130	433882.0	Mm.319353	NR_131130	ENSMUSG00000067285	Gm16223	EG433882	predicted gene 16223	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12776206-2	chr18	12775706	12776706	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252490, intron 4 of 13)	intron (NM_001252490, intron 4 of 13)	34851.0	NM_027687	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43817475-2	chr1	43816975	43817975	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026430, intron 1 of 14)	L1MB2|LINE|L1	10233.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40714141-2	chr19	40713641	40714641	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 2 of 9)	intron (NM_001304721, intron 2 of 9)	54371.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72795243-2	chr5	72794743	72795743	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	-42466.0	NM_001122754	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-64871995-2	chr16	64871495	64872495	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	19994.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95411708-2	chr8	95411208	95412208	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23161.0	NM_008187	14894.0	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70508629-2	chr14	70508129	70509129	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033241, intron 3 of 19)	intron (NR_033241, intron 3 of 19)	11631.0	NM_009755	12153.0	Mm.27757	NM_009755	ENSMUSG00000022098	Bmp1	Pcp|Tld	bone morphogenetic protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-145129430-2	chr5	145128930	145129930	+	599.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033313, exon 6 of 6)	3' UTR (NM_001033313, exon 6 of 6)	10659.0	NM_001033313	231887.0	Mm.188851	NM_001033313	ENSMUSG00000029623	Pdap1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13963238-2	chr10	13962737	13963737	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2838.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr16-36628061-2	chr16	36627561	36628561	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 2 of 7)	intron (NM_019388, intron 2 of 7)	38016.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-110020518-2	chr4	110020018	110021018	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42493.0	NM_172296	242620.0	Mm.32825	NM_172296	ENSMUSG00000047143	Dmrta2	Dmrt5	doublesex and mab-3 related transcription factor like family A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147235617-2	chr4	147235117	147236117	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	Lx8|LINE|L1	59751.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91738253-2	chr2	91737753	91738753	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080754, intron 1 of 18)	intron (NM_001080754, intron 1 of 18)	8115.0	NM_001080754	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	1.0	14.5	5.0	1.0	15.0	6.0
Merged-chr15-43363048-2	chr15	43362569	43363569	+	599.5	f0_balb.idr|f1_balb.idr	Intergenic	L1Md_F2|LINE|L1	-80333.0	NM_008388	16341.0	Mm.289992	NM_008388	ENSMUSG00000022336	Eif3e	48kDa|Eif3s6|Int6|eIF3-p46|eIF3-p48	eukaryotic translation initiation factor 3, subunit E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7437033-2	chr19	7436533	7437533	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053076, intron 1 of 6)	intron (NM_053076, intron 1 of 6)	14460.0	NR_105957	102466781.0		NR_105957	ENSMUSG00000098293	Mir6991	Gm27966|mmu-mir-6991	microRNA 6991	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54696814-2	chr13	54696314	54697314	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-2854.0	NR_027396	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-177488912-2	chr1	177488412	177489412	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43091.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26154101-4	chr8	26153637	26154637	+	599.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4032.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30980858-2	chr2	30980358	30981358	+	599.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_144885, intron 2 of 8)	B1_Mur4|SINE|Alu	1083.0	NM_144885	227707.0	Mm.235238	NM_144885	ENSMUSG00000026851	BC005624	-	cDNA sequence BC005624	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45096178-3	chr2	45095683	45096683	+	599.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_149354, exon 3 of 3)	non-coding (NR_149354, exon 3 of 3)	14094.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-142249527-2	chr4	142249027	142250027	+	599.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10126.0	NM_001109685	71529.0	Mm.255986	NM_144531	ENSMUSG00000040606	Kazn	2310007B04Rik|9030409G11Rik|AI256607|AI666764|AW061099|Kaz|Kazrin	kazrin, periplakin interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131043025-1	chr1	131042525	131043525	+	599.333313	f0_c57.idr	Intergenic	Intergenic	23180.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	0.5	3.5	8.0	3.0	0.0	3.0
Merged-chr17-5425312-2	chr17	5424812	5425812	+	599.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_027457, intron 3 of 3)	intron (NM_027457, intron 3 of 3)	-6545.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20540626-2	chr16	20540147	20541147	+	599.25	f0_balb.idr|f1_c57bl6.idr	intron (NM_009679, intron 4 of 10)	intron (NM_009679, intron 4 of 10)	5167.0	NM_009679	11773.0	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62017813-2	chr15	62017313	62018313	+	599.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20173.0	NR_132747	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72517122-2	chr6	72516622	72517622	+	599.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27269.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141578606-3	chr7	141578134	141579134	+	599.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357068, intron 1 of 21)	ORR1B1|LTR|ERVL-MaLR	16454.0	NM_007459	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51811530-2	chr11	51811030	51812030	+	599.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	45951.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75061022-2	chr10	75060522	75061522	+	599.166626	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081412, exon 1 of 23)	5' UTR (NM_001081412, exon 1 of 23)	126.0	NM_001081412	110279.0	Mm.333722	NM_001081412	ENSMUSG00000009681	Bcr	5133400C09Rik|AI561783|AI853148|mKIAA3017	breakpoint cluster region	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-51300904-2	chr17	51300404	51301404	+	599.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_037268, intron 3 of 4)	Lx4A|LINE|L1	22916.0	NR_037253	100526485.0		NR_037253	ENSMUSG00000105330	Mir669a-6	mmu-mir-669a-6	microRNA 669a-6	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32567431-2	chr4	32566973	32567973	+	599.125	f1_balb.idr|f1_c57bl6.idr	intron (NR_026843, intron 1 of 4)	L1MB8|LINE|L1	4189.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	5.5	22.0	16.0	2.5	33.0	23.0
Merged-chr1-59315224-1	chr1	59314724	59315724	+	599.0	f1_balb.idr	intron (NM_001356389, intron 10 of 13)	intron (NM_001356389, intron 10 of 13)	58318.0	NM_001356389	271697.0	Mm.297713	NM_001033373	ENSMUSG00000026023	Cdk15	Als2cr7|Pftk2	cyclin-dependent kinase 15	protein-coding	0.0	6.0	3.0	0.0	0.0	0.5
Merged-chr11-75570475-1	chr11	75569975	75570975	+	599.0	f1_c57bl6.idr	intron (NM_001199284, intron 11 of 13)	intron (NM_001199284, intron 11 of 13)	-17604.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	47.5	97.0	55.5	28.0	52.5	38.0
Merged-chr5-31196710-2	chr5	31196210	31197210	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153680, intron 8 of 14)	intron (NM_153680, intron 8 of 14)	3406.0	NM_153680	266781.0	Mm.6118	NM_153680	ENSMUSG00000029146	Snx17	5830447M19Rik|AI790646|D5Ertd260e|b2b1625.1Clo|mKIAA0064	sorting nexin 17	protein-coding	4.0	18.0	19.5	5.5	5.0	14.5
Merged-chr14-66227548-2	chr14	66227048	66228048	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-13724.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-33051825-2	chr12	33051325	33052325	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024478, intron 10 of 19)	intron (NM_001024478, intron 10 of 19)	41050.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	0.0	0.0	0.0	0.0	2.5	0.0
Merged-chr11-67789718-1	chr11	67789218	67790218	+	599.0	f1_c57bl6.idr	3' UTR (NM_001347057, exon 5 of 5)	3' UTR (NM_001347057, exon 5 of 5)	-8553.0	NM_001013013	68460.0	Mm.22167	NM_001013013	ENSMUSG00000033044	Dhrs7c	1110001P11Rik|AI120487|SRP-35	dehydrogenase/reductase (SDR family) member 7C	protein-coding	0.0	1.0	0.5	0.0	0.0	0.0
Merged-chr19-45803722-1	chr19	45803222	45804222	+	599.0	f1_c57bl6.idr	intron (NM_145703, intron 1 of 9)	intron (NM_145703, intron 1 of 9)	8569.0	NM_001276358	80906.0	Mm.213204	NM_030716	ENSMUSG00000025221	Kcnip2	KChIP2	Kv channel-interacting protein 2	protein-coding	0.0	0.0	1.0	2.0	0.5	2.0
Merged-chr14-117716539-1	chr14	117716039	117717039	+	599.0	f0_c57.idr	intron (NM_011821, intron 4 of 8)	L1_Mur2|LINE|L1	237308.0	NR_105747	102465148.0		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	13.0	16.5	11.0	1.0	12.0	2.0
Merged-chr5-135737313-2	chr5	135736813	135737813	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172541, intron 3 of 11)	intron (NM_172541, intron 3 of 11)	-1424.0	NR_106001	102466791.0		NR_106001	ENSMUSG00000099197	Mir7034	Gm27372|mmu-mir-7034	microRNA 7034	ncRNA	0.0	0.0	0.0	2.0	10.5	2.5
Merged-chr8-44938605-2	chr8	44938105	44939105	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-11603.0	NM_001081286	14107.0	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT atypical cadherin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180264287-2	chr1	180263787	180264787	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7987.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24645973-1	chr17	24645473	24646473	+	599.0	f1_c57bl6.idr	intron (NM_023055, intron 2 of 6)	intron (NM_023055, intron 2 of 6)	-1016.0	NM_023449	65962.0	Mm.21587	NM_023055	ENSMUSG00000002504	Slc9a3r2	0610011L07Rik|1200011K07Rik|2010007A20Rik|E3karp|NHERF-2|Nherf2|Octs2|Sip-1|Sip1|Sryip1|Tka-1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	protein-coding	0.0	4.0	4.5	4.0	7.5	5.5
Merged-chr10-79885246-2	chr10	79884746	79885746	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	B1_Mur2|SINE|Alu	-1066.0	NM_015779	50701.0	Mm.262194	NM_015779	ENSMUSG00000020125	Elane	Ela2|F430011M15Rik|NE	elastase, neutrophil expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-127146938-2	chr6	127146438	127147438	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009829, intron 2 of 4)	intron (NM_009829, intron 2 of 4)	-2451.0	NR_040274	77558.0	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5321070-2	chr2	5320570	5321570	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 5 of 9)	RMER13B|LTR|ERVK	-58320.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167796201-2	chr2	167795701	167796701	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105024.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53309567-2	chr19	53309067	53310067	+	599.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008542)	promoter-TSS (NM_001008542)	-939.0	NM_001008542	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102144390-2	chr15	102143890	102144890	+	599.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008344, exon 1 of 4)	5' UTR (NM_008344, exon 1 of 4)	204.0	NM_008344	16012.0	Mm.358609	NM_008344	ENSMUSG00000023046	Igfbp6	IGFBP-6	insulin-like growth factor binding protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6087823-2	chr19	6087323	6088323	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026410, intron 4 of 5)	B1_Mur3|SINE|Alu	2726.0	NM_026410	67849.0	Mm.23526	NM_026410	ENSMUSG00000024791	Cdca5	2610036L13Rik|AL024086|AW536684|C85404	cell division cycle associated 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44939611-2	chr7	44939123	44940123	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR18B_MM|LTR|ERVK	-3617.0	NM_001077591	22116.0	Mm.84502	NM_011651	ENSMUSG00000059891	Tsks	Stk22s1|Tssks1	testis-specific serine kinase substrate	protein-coding	5.0	15.5	6.5	8.0	8.0	9.0
Merged-chr12-82195130-3	chr12	82194633	82195633	+	599.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 1 of 23)	intron (NM_001167983, intron 1 of 23)	25117.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17474203-1	chr16	17473703	17474703	+	599.0	f0_balb.idr	intron (NM_007764, intron 2 of 2)	intron (NM_007764, intron 2 of 2)	-15474.0	NM_175178	72168.0	Mm.40038	NM_175178	ENSMUSG00000022763	Aifm3	2810401C16Rik|AI840249|Aifl	apoptosis-inducing factor, mitochondrion-associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-103236377-2	chr9	103235877	103236877	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6091.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	2.5	0.0	0.0	3.0	2.0	1.0
Merged-chr4-61831161-1	chr4	61830661	61831661	+	599.0	f1_c57bl6.idr	TTS (NM_008649)	TTS (NM_008649)	4019.0	NM_008649	17844.0	Mm.445286	NM_008649	ENSMUSG00000058523	Mup5	Mup18	major urinary protein 5	protein-coding	3.0	5.5	4.0	2.5	0.0	5.5
Merged-chr17-79967424-2	chr17	79966924	79967924	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B5_MM|LTR|ERVK	-71301.0	NM_001286647	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173584051-2	chr2	173583551	173584551	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027957, intron 13 of 14)	intron (NR_027957, intron 13 of 14)	-5710.0	NM_027303	70065.0	Mm.425115	NM_027303	ENSMUSG00000027517	Ankrd60	1700019A24Rik|1700030G11Rik	ankyrin repeat domain 60	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-126404912-2	chr6	126404412	126405412	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76226.0	NR_045480	100038574.0	Mm.399353	NR_045480	ENSMUSG00000107623	Gm10415	-	predicted gene 10415	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-52068413-2	chr16	52067913	52068913	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	36864.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33166771-2	chr16	33166271	33167271	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-18300.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106153695-2	chr8	106153195	106154195	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357319, intron 1 of 5)	intron (NM_001357319, intron 1 of 5)	3341.0	NM_001357319	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-62326064-2	chr17	62325564	62326564	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	555253.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129913952-2	chr4	129913470	129914470	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7744.0	NR_045190	319894.0	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	27.5	19.0	25.5	3.0	16.5	16.5
Merged-chr7-19155913-2	chr7	19155413	19156413	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6075.0	NM_026943	107686.0	Mm.29135	NM_026943	ENSMUSG00000040824	Snrpd2	1810009A06Rik|SMD2	small nuclear ribonucleoprotein D2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165945525-2	chr2	165945025	165946025	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47112.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	3.5	1.0	2.5	1.5	0.0	0.0
Merged-chr2-38932595-2	chr2	38932095	38933095	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172854, intron 1 of 7)	intron (NM_172854, intron 1 of 7)	615.0	NM_172854	241327.0	Mm.103491	NM_172854	ENSMUSG00000046618	Olfml2a	4932431K08Rik|mFLJ00237	olfactomedin-like 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-53498190-2	chr8	53497690	53498690	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13512.0	NM_001205054	11593.0	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78836291-1	chr17	78835791	78836791	+	599.0	f0_balb.idr	promoter-TSS (NM_001081179)	promoter-TSS (NM_001081179)	775.0	NM_181649	53951.0	Mm.220253	NM_181649	ENSMUSG00000050668	Gpatch11	2310002B06Rik|C80922|Ccdc75|L26697	G patch domain containing 11	protein-coding	14.0	8.0	3.5	11.5	10.0	5.0
Merged-chr17-34278868-1	chr17	34278368	34279368	+	599.0	f1_balb.idr	Intergenic	RMER19B|LTR|ERVK	8903.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	1.0	12.0	5.0	5.0	6.5	2.0
Merged-chr19-55208030-2	chr19	55207530	55208530	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 15 of 20)	intron (NM_001081076, intron 15 of 20)	15352.0	NR_106146	102465990.0		NR_106146	ENSMUSG00000098289	Mir6715	Gm27474|mmu-mir-6715	microRNA 6715	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126854013-2	chr8	126853513	126854513	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	4993.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29351125-2	chr6	29350625	29351625	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285412, intron 1 of 6)	intron (NM_001285412, intron 1 of 6)	3019.0	NM_007594	12321.0	Mm.392075	NM_007594	ENSMUSG00000029767	Calu	9530075H20Rik	calumenin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156780809-3	chr2	156780328	156781328	+	599.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172118, intron 3 of 3)	intron (NM_172118, intron 3 of 3)	5364.0	NM_172118	98932.0	Mm.271770	NM_172118	ENSMUSG00000067818	Myl9	AI327049|MLC20|Mylc2c|RLC-C	myosin, light polypeptide 9, regulatory	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-6623660-1	chr6	6623160	6624160	+	599.0	f1_c57bl6.idr	Intergenic	Intergenic	-45002.0	NM_009169	20422.0	Mm.2469	NM_009169	ENSMUSG00000042541	Sem1	DSS1|Shfdg1|Shfg|Shfm1	SEM1, 26S proteasome complex subunit	protein-coding	0.5	0.0	0.0	0.0	1.0	4.0
Merged-chr4-33377865-2	chr4	33377365	33378365	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305273, intron 11 of 15)	RMER15|LTR|ERVL	-60216.0	NR_106198	102465904.0		NR_106198	ENSMUSG00000098310	Mir8118	Gm27954|mmu-mir-8118	microRNA 8118	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-44623438-1	chr15	44622938	44623938	+	599.0	f0_c57.idr	intron (NM_019480, intron 1 of 6)	intron (NM_019480, intron 1 of 6)	3797.0	NM_019480	55960.0	Mm.287896	NM_019480	ENSMUSG00000022339	Ebag9	AI835379|Rcas1	estrogen receptor-binding fragment-associated gene 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28954979-1	chr7	28954479	28955479	+	599.0	f0_balb.idr	intron (NM_021895, intron 1 of 20)	intron (NM_021895, intron 1 of 20)	7353.0	NM_001360549	60595.0	Mm.81144	NM_021895	ENSMUSG00000054808	Actn4	C77391	actinin alpha 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-16618128-1	chr11	16617628	16618628	+	599.0	f1_c57bl6.idr	Intergenic	Intergenic	-109644.0	NM_001109971	20335.0	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	14.5	3.5	9.0	4.5	7.0	1.5
Merged-chr19-5085611-1	chr19	5085111	5086111	+	599.0	f0_balb.idr	promoter-TSS (NM_001001885)	promoter-TSS (NM_001001885)	-134.0	NM_001001885	381199.0	Mm.329663	NM_001001885	ENSMUSG00000061451	Tmem151a	AW125688|Gm961|Tmem151	transmembrane protein 151A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-113663209-2	chr8	113662709	113663709	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	13249.0	NR_136914	102631810.0	Mm.412563	NR_136914	ENSMUSG00000110582	Gm30052	-	predicted gene, 30052	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-92171135-1	chr17	92170635	92171635	+	599.0	f1_balb.idr	Intergenic	Intergenic	-1027882.0	NM_001315503	11516.0	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding	0.0	1.5	0.0	0.0	0.0	1.0
Merged-chr17-5209088-2	chr17	5208588	5209588	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	B2_Mm1a|SINE|B2	209679.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34661482-1	chr5	34660982	34661982	+	599.0	f1_balb.idr	intron (NM_001080743, intron 1 of 5)	B1_Mus2|SINE|Alu	1103.0	NM_019497	14772.0	Mm.117076	NM_019497	ENSMUSG00000052783	Grk4	A830025H08Rik|GRK|Gprk2l|Gprk4	G protein-coupled receptor kinase 4	protein-coding	3.0	0.0	1.0	0.0	4.0	2.0
Merged-chr13-59508751-2	chr13	59508243	59509243	+	599.0	f0_balb.idr|f1_balb.idr	intron (NM_001048008, intron 11 of 17)	intron (NM_001048008, intron 11 of 17)	35708.0	NM_001284221	67269.0	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	6.5	2.5	3.5	0.0	2.5	3.0
Merged-chr3-142578687-2	chr3	142578187	142579187	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16160.0	NM_010259	14468.0	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	10.0	13.0	9.0	15.0	17.0	11.5
Merged-chr17-72920253-1	chr17	72919753	72920753	+	599.0	f0_balb.idr	intron (NM_029999, intron 1 of 2)	intron (NM_029999, intron 1 of 2)	1948.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	3.0	0.0	0.5	0.0	2.0	1.0
Merged-chr2-164935174-1	chr2	164934674	164935674	+	599.0	f1_balb.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-13045.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	3.0	0.0	0.5	0.5	0.0	0.5
Merged-chr6-121054719-1	chr6	121054219	121055219	+	599.0	f1_balb.idr	intron (NM_001270475, intron 1 of 31)	intron (NM_001270475, intron 1 of 31)	-9745.0	NR_138098	100043793.0	Mm.448053	NR_138098		Gm4651	-	predicted gene 4651	ncRNA	0.0	0.0	2.5	3.5	0.0	2.5
Merged-chr17-35175151-2	chr17	35174652	35175652	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019467, intron 1 of 7)	(TG)n|Simple_repeat|Simple_repeat	900.0	NM_019467	11629.0	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-83717931-2	chr16	83717431	83718431	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-653212.0	NR_040567	75247.0	Mm.417813	NR_040567		4930553E22Rik	-	RIKEN cDNA 4930553E22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50244947-2	chr11	50244447	50245447	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER2|DNA|TcMar-Tigger	-6415.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118721478-2	chr9	118720978	118721978	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	9786.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	7.0	6.5	7.5	4.5	1.0	2.5
Merged-chr7-16858553-2	chr7	16858053	16859053	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178900, intron 14 of 17)	intron (NM_178900, intron 14 of 17)	15488.0	NM_178900	101540.0	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-92100337-2	chr6	92099837	92100837	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347342, intron 1 of 14)	intron (NM_001347342, intron 1 of 14)	7904.0	NM_001347342	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	2.5	6.0	9.0	2.0	6.0	9.5
Merged-chr11-115668106-2	chr11	115667606	115668606	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	31428.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86521510-2	chr6	86521010	86522010	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4679.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17783040-1	chr12	17782540	17783540	+	599.0	f0_balb.idr	intron (NM_001361645, intron 2 of 4)	intron (NM_001361645, intron 2 of 4)	92231.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0.5	6.0	2.5	4.0	4.5	0.5
Merged-chr9-61365024-2	chr9	61364524	61365524	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7342.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97792034-2	chr11	97791534	97792534	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7531.0	NM_010688	16796.0	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	1.0	5.0	0.0	0.5	0.0	0.0
Merged-chr15-101249110-1	chr15	101248610	101249610	+	599.0	f1_c57bl6.idr	Intergenic	Intergenic	-17736.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	2.0	0.0	3.0	4.0	3.5	4.0
Merged-chr11-55022748-1	chr11	55022248	55023248	+	599.0	f0_balb.idr	intron (NR_138556, intron 1 of 24)	intron (NR_138556, intron 1 of 24)	10723.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6280854-2	chr19	6280354	6281354	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 1 of 4)	PB1D10|SINE|Alu	3958.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-84192310-2	chr7	84191810	84192810	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-40417.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	0.0	2.0	1.0	0.0	2.0	1.0
Merged-chr11-117857371-2	chr11	117856871	117857871	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3381.0	NM_001085535	546519.0	Mm.385578	NM_001085535	ENSMUSG00000070330	Tmem235	Cldn27|Gm12581	transmembrane protein 235	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-137755860-2	chr6	137755348	137756348	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172733, intron 1 of 8)	intron (NM_172733, intron 1 of 8)	1271.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-50909191-2	chr10	50908691	50909691	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011376, intron 5 of 10)	intron (NM_011376, intron 5 of 10)	13540.0	NM_011376	20464.0	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded family bHLH transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88593484-2	chr5	88592984	88593984	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 2 of 13)	(CA)n|Simple_repeat|Simple_repeat	9971.0	NM_001359209	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-30257800-1	chr12	30257300	30258300	+	599.0	f0_balb.idr	intron (NM_001324521, intron 8 of 15)	intron (NM_001324521, intron 8 of 15)	115575.0	NM_172951	268534.0	Mm.279765	NM_172951	ENSMUSG00000020672	Sntg2	2210008K22Rik|9530013L23|BB121248|G2syn|Syn5	syntrophin, gamma 2	protein-coding	6.5	0.0	5.0	6.0	0.5	1.0
Merged-chr7-30285525-1	chr7	30285025	30286025	+	599.0	f0_balb.idr	intron (NR_144498, intron 2 of 2)	intron (NR_144498, intron 2 of 2)	-5104.0	NM_146186	233064.0	Mm.271677	NM_146186	ENSMUSG00000037020	Wdr62	2310038K02Rik|b2b1508Clo	WD repeat domain 62	protein-coding	1.0	0.5	3.0	5.0	4.0	11.0
Merged-chr11-121233030-2	chr11	121232530	121233530	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3721.0	NM_001252548	217370.0	Mm.27182	NM_144832	ENSMUSG00000039294	BC017643	-	cDNA sequence BC017643	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56655406-2	chr19	56654906	56655906	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66966.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-11908676-2	chr6	11908176	11909176	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362123, intron 1 of 15)	intron (NM_001362123, intron 1 of 15)	847.0	NM_001362123	75725.0	Mm.212411	NM_029404	ENSMUSG00000029629	Phf14	1110001C23Rik|4932409F11Rik|5730446A07Rik|AA623952|AV297001|mKIAA0783	PHD finger protein 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112345316-2	chr5	112344816	112345816	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359853, intron 2 of 13)	intron (NM_001359853, intron 2 of 13)	2221.0	NM_138646	192232.0	Mm.238043	NM_138646	ENSMUSG00000042328	Hps4	2010205O06Rik|AU040608|BLOC-3|C130020P05Rik|le|mKIAA1667	HPS4, biogenesis of lysosomal organelles complex 3 subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123367549-2	chr9	123367049	123368049	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348167, intron 1 of 20)	intron (NM_001348167, intron 1 of 20)	622.0	NM_001348168	102436.0	Mm.276076	NM_153168	ENSMUSG00000035202	Lars2	AI035546|Kiaa0028|LEURS	leucyl-tRNA synthetase, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-72190859-2	chr4	72190359	72191359	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285530, intron 4 of 17)	intron (NM_001285530, intron 4 of 17)	10034.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-94887160-1	chr17	94886660	94887660	+	599.0	f1_balb.idr	Intergenic	(TTAGGG)n|Simple_repeat|Simple_repeat	22242.0	NM_001024731	100044193.0		NM_001024731	ENSMUSG00000095193	Gm20939	-	predicted gene, 20939	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35499045-2	chr8	35498545	35499545	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3512.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	0.5	3.5	0.0	4.0	7.0	2.0
Merged-chr5-107522142-1	chr5	107521642	107522642	+	599.0	f0_balb.idr	Intergenic	MER57C2|LTR|ERV1	-12569.0	NM_182745	76421.0	Mm.67037	NM_175241	ENSMUSG00000089798	1700028K03Rik	-	RIKEN cDNA 1700028K03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24952838-2	chr7	24952338	24953338	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17237.0	NR_106013	102465633.0		NR_106013	ENSMUSG00000098802	Mir7046	Gm27469|mmu-mir-7046	microRNA 7046	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-63882934-2	chr7	63882432	63883432	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33925.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	1.0	4.0	3.0	6.0	11.0	4.0
Merged-chr19-44406492-2	chr19	44405992	44406992	+	599.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009127, exon 2 of 6)	exon (NM_009127, exon 2 of 6)	1217.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36267183-2	chr17	36266683	36267683	+	599.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_024468, exon 3 of 7)	exon (NM_024468, exon 3 of 7)	4248.0	NM_001357889	79263.0	Mm.40624	NM_024468	ENSMUSG00000045409	Trim39	1100001D15Rik|E130103K13Rik|RBCC-B30.2|Rnf23|mKIAA4179|tfp	tripartite motif-containing 39	protein-coding	11.5	0.0	0.5	0.0	0.0	2.0
Merged-chr17-28163878-1	chr17	28163378	28164378	+	599.0	f0_c57.idr	intron (NM_001004366, intron 10 of 21)	intron (NM_001004366, intron 10 of 21)	-13318.0	NM_001357995	224656.0	Mm.267359	NM_172617	ENSMUSG00000024220	Zfp523	2810027J07|BC025615|Znf76	zinc finger protein 523	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-4599080-2	chr9	4598580	4599580	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113181, intron 4 of 10)	Lx|LINE|L1	197154.0	NM_001113180	14802.0	Mm.209263	NM_019691	ENSMUSG00000025892	Gria4	GluA4|GluR-D|Glur-4|Glur4|Gluralpha4|spkw1	glutamate receptor, ionotropic, AMPA4 (alpha 4)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6295432-2	chr19	6294932	6295932	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 3 of 4)	intron (NM_010119, intron 3 of 4)	-11025.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25236592-2	chr7	25236092	25237092	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001031667, intron 1 of 10)	intron (NM_001031667, intron 1 of 10)	1259.0	NM_001031667	606496.0	Mm.491101	NM_001031667	ENSMUSG00000057177	Gsk3a	2700086H06Rik	glycogen synthase kinase 3 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152104350-2	chr2	152103850	152104850	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30D2_MM|LTR|ERV1	-1174.0	NM_029688	76650.0	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167780020-2	chr2	167779520	167780520	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	88843.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-91388971-1	chr9	91388471	91389471	+	599.0	f0_balb.idr	3' UTR (NM_009576, exon 5 of 5)	3' UTR (NM_009576, exon 5 of 5)	19999.0	NM_009576	22774.0	Mm.8062	NM_009576	ENSMUSG00000036972	Zic4	-	zinc finger protein of the cerebellum 4	protein-coding	0.0	0.0	0.0	6.0	0.0	0.0
Merged-chr4-126534053-2	chr4	126533553	126534553	+	599.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153177)	promoter-TSS (NM_153177)	-595.0	NM_153177	76850.0	Mm.86705	NM_153177	ENSMUSG00000042500	Ago4	5730550L01Rik|AI481660|Eif2c4	argonaute RISC catalytic subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45745832-2	chr19	45745332	45746332	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2948.0	NM_001166362	14179.0	Mm.4012	NM_010205	ENSMUSG00000025219	Fgf8	Aigf|Fgf-8	fibroblast growth factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-15714719-2	chr6	15714219	15715219	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_1B-I_MM-int|LTR|ERVK	-5942.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-177956923-2	chr2	177956423	177957423	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190302, intron 1 of 4)	RMER17B|LTR|ERVK	365.0	NM_001282028	665211.0	Mm.441314	NM_001190302	ENSMUSG00000078862	Gm14326	-	predicted gene 14326	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4772363-2	chr16	4771863	4772863	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358082, intron 1 of 5)	intron (NM_001358082, intron 1 of 5)	15417.0	NM_001357050	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6556426-2	chr15	6555926	6556926	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23421.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158202788-2	chr2	158202288	158203288	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001131021, intron 11 of 15)	intron (NM_001131021, intron 11 of 15)	10780.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64599284-1	chr1	64598784	64599784	+	599.0	f0_balb.idr	3' UTR (NM_009952, exon 9 of 9)	3' UTR (NM_009952, exon 9 of 9)	17884.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80157389-2	chr11	80156889	80157889	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 3 of 10)	intron (NM_172133, intron 3 of 10)	3227.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-21961884-2	chr17	21961375	21962375	+	599.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025373)	promoter-TSS (NM_001025373)	589.0	NM_001199048	73233.0	Mm.311219	NM_001199048	ENSMUSG00000071267	Zfp942	3110048L19Rik	zinc finger protein 942	protein-coding	19.5	28.5	13.5	13.5	12.0	10.0
Merged-chr10-7122569-2	chr10	7122069	7123069	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172546, intron 12 of 12)	ORR1E|LTR|ERVL-MaLR	89668.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-114299686-1	chr3	114299186	114300186	+	599.0	f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	269146.0	NM_007729	12814.0	Mm.209715	NM_007729	ENSMUSG00000027966	Col11a1	C530001D20Rik|cho	collagen, type XI, alpha 1	protein-coding	10.5	2.0	8.0	1.5	7.0	1.5
Merged-chr1-85084942-1	chr1	85084442	85085442	+	599.0	f1_balb.idr	Intergenic	Intergenic	24911.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122779079-2	chr10	122778579	122779579	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	B3|SINE|B2	99764.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107739947-2	chr9	107739447	107740447	+	599.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_148930)	TTS (NM_148930)	-29472.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34932491-2	chr17	34931991	34932991	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010893, intron 2 of 5)	intron (NM_010893, intron 2 of 5)	1238.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27896343-2	chr17	27895843	27896843	+	599.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001080769, exon 21 of 21)	3' UTR (NM_001080769, exon 21 of 21)	12899.0	NM_026836	68776.0	Mm.267998	NM_026836	ENSMUSG00000024218	Taf11	1110038O14Rik|AI115401|AL024207|AW552398|PRO214|TAF2I|TAFII28	TATA-box binding protein associated factor 11	protein-coding	4.5	16.5	16.0	0.0	5.0	0.0
Merged-chr6-89420879-2	chr6	89420379	89421379	+	598.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 4 of 6)	intron (NM_001167736, intron 4 of 6)	-58266.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117283525-2	chr11	117283025	117284025	+	598.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113487, intron 1 of 10)	intron (NM_001113487, intron 1 of 10)	17279.0	NM_001113487	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19315588-2	chr3	19315118	19316118	+	598.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-4296.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	0.0	5.0	0.0	0.0	0.0	0.5
Merged-chr11-76480717-2	chr11	76480217	76481217	+	598.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 2 of 21)	intron (NM_001346670, intron 2 of 21)	-12252.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	103.0	231.5	152.5	101.0	155.5	155.0
Merged-chr11-119297596-2	chr11	119297096	119298096	+	598.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_138669, intron 2 of 11)	intron (NM_138669, intron 2 of 11)	2447.0	NM_138669	192170.0	Mm.197555	NM_138669	ENSMUSG00000025580	Eif4a3	2400003O03Rik|Ddx48|eIF4A-III|mKIAA0111	eukaryotic translation initiation factor 4A3	protein-coding	4.0	3.0	4.0	2.5	10.5	4.5
Merged-chr3-21954277-2	chr3	21953777	21954777	+	598.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122375.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109463791-2	chr8	109463291	109464291	+	598.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30236.0	NM_019938	56523.0	Mm.42166	NM_019938	ENSMUSG00000031727	Pmfbp1	1700016D22Rik|F77|Stap	polyamine modulated factor 1 binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60515720-3	chr18	60515194	60516194	+	598.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-10460.0	NM_026302	67665.0	Mm.272801	NM_026302	ENSMUSG00000024603	Dctn4	1110001K06Rik|4930547K17Rik|C130039E17Rik|p62	dynactin 4	protein-coding	0.0	0.0	3.0	0.0	3.0	3.0
Merged-chr7-141575765-3	chr7	141575273	141576273	+	598.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357068, intron 1 of 21)	(T)n|Simple_repeat|Simple_repeat	13593.0	NM_007459	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-151208495-2	chr4	151207995	151208995	+	598.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 6 of 23)	intron (NM_001081557, intron 6 of 23)	118925.0	NM_001308446	105704528.0	Mm.415128	NM_001308446	ENSMUSG00000078491	Gm13090	-	predicted gene 13090	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56936983-2	chr17	56936483	56937483	+	598.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1595.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-93235584-2	chr14	93235071	93236071	+	598.666626	f0_balb.idr|f1_c57bl6.idr	intron (NM_001271800, intron 3 of 3)	intron (NM_001271800, intron 3 of 3)	655098.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	9.0	9.0	2.0	0.0	5.5	2.5
Merged-chr6-127107580-3	chr6	127107081	127108081	+	598.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177003, intron 1 of 5)	intron (NM_177003, intron 1 of 5)	1971.0	NM_177003	319801.0	Mm.101836	NM_177003	ENSMUSG00000038028	Tigar	9630033F20Rik|AA793651|AI595337|C79710|C85509	Trp53 induced glycolysis repulatory phosphatase	protein-coding	0.0	6.0	0.5	4.5	5.0	0.0
Merged-chr7-97085439-2	chr7	97084939	97085939	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	3688.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	15.5	22.5	17.0	18.0	35.5	3.0
Merged-chr2-112369958-2	chr2	112369458	112370458	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-1931.0	NM_026519	68032.0	Mm.220942	NM_026519	ENSMUSG00000027131	Emc4	2610318K02Rik|Tmem85	ER membrane protein complex subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142842297-2	chr5	142841797	142842797	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24910.0	NM_001122730	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-70791044-2	chr6	70790544	70791544	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009075, intron 1 of 8)	intron (NM_009075, intron 1 of 8)	1131.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85256811-2	chr12	85256311	85257311	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175337, intron 5 of 11)	intron (NM_175337, intron 5 of 11)	-10826.0	NR_105903	102466769.0		NR_105903	ENSMUSG00000098263	Mir6938	Gm27519|mmu-mir-6938	microRNA 6938	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127200180-2	chr7	127199680	127200680	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144522, intron 5 of 8)	intron (NM_144522, intron 5 of 8)	-4103.0	NM_027353	70233.0	Mm.28050	NM_027353	ENSMUSG00000042502	Cd2bp2	1500011B02Rik|2410024K20Rik|AW048183	CD2 antigen (cytoplasmic tail) binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121989379-2	chr14	121988879	121989879	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 6 of 8)	intron (NM_026861, intron 6 of 8)	-24186.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr5-125333926-2	chr5	125333426	125334426	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	7168.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	5.0	13.0	12.0	2.5	15.5	10.0
Merged-chr15-59837772-2	chr15	59837272	59838272	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42813.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.0	0.5	0.0	0.0	0.5	0.0
Merged-chr13-111949074-2	chr13	111948574	111949574	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81138.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98803177-2	chr15	98802677	98803677	+	598.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001013741)	TTS (NM_001013741)	4748.0	NM_001013741	13199.0	Mm.390810	NM_001013741	ENSMUSG00000059213	Ddn	Gm748	dendrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101554364-2	chr11	101553864	101554864	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008676, intron 2 of 23)	B3|SINE|B2	1710.0	NM_001252223	17966.0	Mm.784	NM_008676	ENSMUSG00000017119	Nbr1	mKIAA0049	neighbor of Brca1 gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94175815-2	chr8	94175315	94176315	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3197.0	NM_008630	17750.0	Mm.147226	NM_008630	ENSMUSG00000031762	Mt2	AA409533|MT-II|Mt-2	metallothionein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71322556-2	chr2	71322056	71323056	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 5 of 17)	L1MB5|LINE|L1	44998.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-129573951-2	chr7	129573451	129574451	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-17912.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-14265961-2	chr3	14265461	14266461	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-97156.0	NR_033591	622229.0	Mm.486084	NR_033591		Gm6300	EG622229	solute carrier family 7 (cationic amino acid transporter, y+ system), member pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80129902-2	chr11	80129402	80130402	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029856, intron 19 of 22)	intron (NM_001029856, intron 19 of 22)	12251.0	NM_183275	68550.0	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134540327-2	chr6	134539827	134540827	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 2 of 22)	intron (NM_008514, intron 2 of 22)	26586.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	100.5	235.5	167.0	50.5	171.0	124.0
Merged-chr10-79976961-2	chr10	79976461	79977461	+	598.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001003949)	TTS (NM_001003949)	6237.0	NM_130455	170483.0	Mm.391566	NM_130455	ENSMUSG00000035745	Grin3b	GluN3B|NR3B	glutamate receptor, ionotropic, NMDA3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-14589980-2	chr10	14589480	14590480	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR72_RN|LTR|ERV1	-44944.0	NM_001002268	215798.0	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-28185043-2	chr15	28184543	28185543	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-18723.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44685535-2	chr9	44685035	44686035	+	598.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153537)	TTS (NM_153537)	12302.0	NM_001277847	58866.0	Mm.45380	NM_021481	ENSMUSG00000032098	Treh	2210412M19Rik	trehalase (brush-border membrane glycoprotein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-118393707-2	chr1	118393207	118394207	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359330, intron 1 of 39)	intron (NM_001359330, intron 1 of 39)	4649.0	NM_001359334	76707.0	Mm.138740	NM_029709	ENSMUSG00000064302	Clasp1	1700030C23Rik|5730583A19Rik|B130045P17Rik|CLASP1alpha	CLIP associating protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98258089-2	chr12	98257589	98258589	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008079, intron 1 of 16)	intron (NM_008079, intron 1 of 16)	1370.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-61368669-2	chr3	61368169	61369169	+	598.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028712)	TTS (NM_028712)	4162.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-25550107-2	chr18	25549607	25550607	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362322, intron 2 of 12)	intron (NM_001362322, intron 2 of 12)	129641.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36914282-2	chr17	36913785	36914785	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-9507.0	NR_045439	73286.0	Mm.426884	NR_045439	ENSMUSG00000092239	1700031A10Rik	-	RIKEN cDNA 1700031A10 gene	ncRNA	0.0	0.0	7.5	5.5	9.0	0.0
Merged-chr7-130857279-2	chr7	130856779	130857779	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8445.0	NM_133942	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-52238125-2	chr10	52237625	52238625	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347444, intron 1 of 9)	intron (NM_001347444, intron 1 of 9)	4506.0	NM_025705	66686.0	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103891853-2	chr14	103891353	103892353	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47377.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125570206-2	chr6	125569706	125570706	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 5 of 51)	Lx9|LINE|L1	17258.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91727853-2	chr2	91727353	91728353	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2285.0	NM_172669	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88584801-2	chr1	88584301	88585301	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33284.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-30258503-2	chr12	30258003	30259003	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001324520, intron 8 of 16)	intron (NM_001324520, intron 8 of 16)	114872.0	NM_172951	268534.0	Mm.279765	NM_172951	ENSMUSG00000020672	Sntg2	2210008K22Rik|9530013L23|BB121248|G2syn|Syn5	syntrophin, gamma 2	protein-coding	1.0	0.0	5.5	10.5	3.5	5.5
Merged-chr10-79989898-2	chr10	79989398	79990398	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007725, intron 1 of 6)	intron (NM_007725, intron 1 of 6)	1298.0	NM_007725	12798.0	Mm.157770	NM_007725	ENSMUSG00000004665	Cnn2	AA408047|AI324678|Calpo2	calponin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-96871615-2	chr2	96871115	96872115	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289742, intron 3 of 7)	intron (NM_001289742, intron 3 of 7)	553446.0	NM_001289743	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.0	0.0	0.5	0.5	1.0	1.0
Merged-chr4-136464398-2	chr4	136463898	136464898	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5363.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	3.5	12.0	13.0	2.5	17.0	22.0
Merged-chr13-104918916-2	chr13	104918416	104919416	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55023.0	NM_029984	77803.0	Mm.159995	NM_029984	ENSMUSG00000042655	Fam159b	A930021C24Rik|Shisal2b	family with sequence similarity 159, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-55950150-2	chr17	55949650	55950650	+	598.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310337)	promoter-TSS (NM_001310337)	-650.0	NM_001310337	240120.0	Mm.441018	NM_146249	ENSMUSG00000062101	Zfp119b	-	zinc finger protein 119b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129682924-2	chr6	129682426	129683426	+	598.5	f0_c57.idr|f1_balb.idr	Intergenic	RLTR12BD_Mm|LTR|ERVK	-3953.0	NM_010652	16641.0	Mm.56899	NM_010652	ENSMUSG00000030167	Klrc1	CD159a|NKG2A|NKG2B	killer cell lectin-like receptor subfamily C, member 1	protein-coding	22.5	44.0	30.0	22.5	16.5	15.0
Merged-chr4-146455679-2	chr4	146455211	146456211	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085522, intron 1 of 3)	RMER17B|LTR|ERVK	6681.0	NM_001085522	433791.0	Mm.276881	NM_001085522	ENSMUSG00000070605	Zfp992	Gm13251	zinc finger protein 992	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-83308152-2	chr4	83307652	83308652	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 1 of 19)	ORR1G|LTR|ERVL-MaLR	16037.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-44936889-2	chr12	44936393	44937393	+	598.5	f0_c57.idr|f1_c57bl6.idr	intron (NM_144552, intron 2 of 5)	intron (NM_144552, intron 2 of 5)	137590.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	1.5	1.0	1.0	0.0	8.5	0.5
Merged-chr17-64333033-3	chr17	64332510	64333510	+	598.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1127.0	NM_001025309	224938.0	Mm.489681	NM_144859	ENSMUSG00000024083	Pja2	AI447901|AL022700|Neurodap1|mKIAA0438	praja ring finger ubiquitin ligase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99055440-2	chr7	99054889	99055889	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 6 of 14)	intron (NM_178635, intron 6 of 14)	85755.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	2.5	8.5	5.5	0.0	2.5	6.5
Merged-chr6-42386526-2	chr6	42386026	42387026	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-13258.0	NM_023580	13835.0	Mm.133330	NM_023580	ENSMUSG00000029859	Epha1	5730453L17Rik|AL033318|Eph|Esk	Eph receptor A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4483322-2	chr11	4482822	4483822	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028860, intron 17 of 17)	intron (NM_028860, intron 17 of 17)	-42240.0	NM_029458	75828.0	Mm.159592	NM_029458	ENSMUSG00000020419	Hormad2	4930529M09Rik	HORMA domain containing 2	protein-coding	0.0	0.0	0.5	1.5	0.0	0.0
Merged-chr8-106507901-1	chr8	106507401	106508401	+	598.5	f0_balb.idr	Intergenic	CpG	-2951.0	NM_007665	12560.0	Mm.4658	NM_007665	ENSMUSG00000061048	Cdh3	AI385538|Cadp|Cdhp|P-cadherin|Pcad	cadherin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-178059010-2	chr2	178058510	178059510	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19415.0	NM_001162922	353208.0	Mm.381194	NM_001162922	ENSMUSG00000078861	Zfp931	2810021G02Rik	zinc finger protein 931	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121390080-2	chr9	121389580	121390580	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357970, intron 1 of 15)	intron (NM_001357970, intron 1 of 15)	7286.0	NM_001357969	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-66981887-2	chr3	66981387	66982387	+	598.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302359)	promoter-TSS (NM_001302359)	-116.0	NM_001302357	20429.0	Mm.39093	NM_013665	ENSMUSG00000027833	Shox2	6330543G17Rik|OG12|Og12x|Prx3|SHOT	short stature homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32713500-2	chr19	32713000	32714000	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-1202.0	NM_026487	67979.0	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24433079-2	chr16	24432579	24433579	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 1 of 12)	MER33|DNA|hAT-Charlie	-15012.0	NM_001145952	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64091985-1	chr15	64091485	64092485	+	598.5	f0_balb.idr	intron (NM_001276461, intron 28 of 28)	intron (NM_001276461, intron 28 of 28)	-31537.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	2.5	6.0	3.5	2.5	6.0	3.5
Merged-chr9-22015836-2	chr9	22015336	22016336	+	598.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010487, exon 7 of 7)	3' UTR (NM_010487, exon 7 of 7)	12848.0	NM_001293650	19089.0	Mm.214593	NM_008925	ENSMUSG00000003402	Prkcsh	80K-H|PKCSH	protein kinase C substrate 80K-H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55164916-2	chr11	55164416	55165416	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153170, intron 7 of 9)	B3|SINE|B2	-13210.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39371649-2	chr10	39371149	39372149	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122893, intron 1 of 13)	intron (NM_001122893, intron 1 of 13)	1850.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8983459-2	chr11	8982959	8983959	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27732.0	NM_001303610	15574.0	Mm.42201	NM_008316	ENSMUSG00000020413	Hus1	-	HUS1 checkpoint clamp component	protein-coding	0.0	0.0	0.5	0.0	0.5	1.0
Merged-chr15-27614558-2	chr15	27614058	27615058	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013792, intron 4 of 6)	intron (NM_001013792, intron 4 of 6)	16135.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95952028-2	chr3	95951528	95952528	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22771.0	NM_023210	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	148.5	314.0	287.0	145.0	384.0	305.0
Merged-chr13-29974980-2	chr13	29974480	29975480	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010093, intron 1 of 6)	intron (NM_010093, intron 1 of 6)	9411.0	NM_001289920	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-70824705-1	chr2	70824205	70825205	+	598.5	f0_balb.idr	intron (NM_172664, intron 1 of 19)	intron (NM_172664, intron 1 of 19)	775.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24595107-2	chr5	24594607	24595607	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025891, intron 7 of 12)	intron (NM_025891, intron 7 of 12)	2993.0	NR_030423	735264.0		NR_030423	ENSMUSG00000076387	Mir671	Mirn671|mmu-mir-671	microRNA 671	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100600948-2	chr15	100600425	100601425	+	598.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304965)	promoter-TSS (NM_001304965)	-941.0	NM_001304965	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	0.0	7.0	6.0	2.5	13.5	12.0
Merged-chr2-138266752-2	chr2	138266252	138267252	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025431, intron 1 of 4)	intron (NM_001025431, intron 1 of 4)	10168.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-53085823-2	chr5	53085323	53086323	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A|LTR|ERVK	36470.0	NM_011402	20531.0	Mm.284891	NM_011402	ENSMUSG00000029188	Slc34a2	AA536683|D5Ertd227e|NaPi-2b|Npt2b	solute carrier family 34 (sodium phosphate), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38804321-2	chr6	38803821	38804821	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 2 of 14)	MTD|LTR|ERVL-MaLR	32990.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60773533-2	chr18	60773033	60774033	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1063.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	1.5	0.5	2.5	1.5	1.5	2.0
Merged-chr6-72372752-2	chr6	72372252	72373252	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016872, intron 1 of 2)	B4A|SINE|B4	-5780.0	NM_001331167	66510.0	Mm.170023	NM_025607	ENSMUSG00000055850	Rnf181	1700047F16Rik|2500002L14Rik|6230415N01Rik|C77350	ring finger protein 181	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25134005-2	chr7	25133505	25134505	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1545.0	NM_001163554	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95328370-2	chr8	95327870	95328870	+	598.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_024467, exon 2 of 2)	exon (NM_024467, exon 2 of 2)	3580.0	NM_024467	79233.0	Mm.350514	NM_024467	ENSMUSG00000046556	Zfp319	AI225750|AI413472|Znf319|mKIAA1388	zinc finger protein 319	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-118621511-2	chr4	118621011	118622011	+	598.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026932, exon 3 of 9)	exon (NM_026932, exon 3 of 9)	712.0	NM_026932	69072.0	Mm.29906	NM_026932	ENSMUSG00000028729	Ebna1bp2	1810014B19Rik|AA537058|B830003A16Rik|C81321|Ebp2|Nobp|p40	EBNA1 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-11397636-2	chr15	11397136	11398136	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033074, intron 1 of 18)	intron (NM_033074, intron 1 of 18)	2022.0	NM_033074	110960.0	Mm.286061	NM_033074	ENSMUSG00000022241	Tars	D15Wsu59e|ThrRS	threonyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-26176374-2	chr10	26175874	26176874	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53333.0	NM_001013766	268288.0	Mm.213322	NM_001013766	ENSMUSG00000051354	Samd3	Gm623	sterile alpha motif domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106074254-2	chr11	106073754	106074754	+	598.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027346)	TTS (NM_027346)	8147.0	NM_027346	70207.0	Mm.343857	NM_027346	ENSMUSG00000001983	Taco1	2310066I18Rik|Ccdc44	translational activator of mitochondrially encoded cytochrome c oxidase I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-109887382-2	chr2	109886882	109887882	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3496.0	NM_011699	22343.0	Mm.235300	NM_011699	ENSMUSG00000027162	Lin7c	9130007B12Rik|AI303698|AU019331|AW125731|D2Ertd520e|LIN-7-C|LIN-7C|MALS-3|Veli3	lin-7 homolog C (C. elegans)	protein-coding	0.0	0.0	0.0	2.0	1.5	2.5
Merged-chr1-182383647-2	chr1	182383147	182384147	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-25520.0	NM_173378	209456.0	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10326193-2	chr17	10325693	10326693	+	598.474976	f1_balb.idr|f1_c57bl6.idr	intron (NR_045461, intron 2 of 2)	intron (NR_045461, intron 2 of 2)	1591.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5561408-3	chr17	5560912	5561912	+	598.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	68812.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-148940563-4	chr6	148940046	148941046	+	598.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361398, intron 1 of 4)	B2_Mm2|SINE|B2	4280.0	NM_001355645	56306.0	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Sinhcaf|Tera	family with sequence similarity 60, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43816934-2	chr1	43816434	43817434	+	598.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026430, intron 1 of 14)	intron (NM_026430, intron 1 of 14)	10774.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64797055-2	chr5	64796555	64797555	+	598.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-6468.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35003445-2	chr17	35002945	35003945	+	598.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011690, intron 2 of 29)	B1_Mur1|SINE|Alu	2538.0	NM_011690	22321.0	Mm.28420	NM_011690	ENSMUSG00000007029	Vars	Bat6|D17H6S56E|G7a|Vars2	valyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101045263-2	chr15	101044763	101045763	+	598.333374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011323, exon 26 of 26)	3' UTR (NM_011323, exon 26 of 26)	9136.0	NM_001214911	668225.0	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-118508113-2	chr3	118507613	118508613	+	598.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54067.0	NM_170778	99586.0	Mm.27907	NM_170778	ENSMUSG00000033308	Dpyd	AI315208|DHPDHase|DPD|E330028L06Rik	dihydropyrimidine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-136893733-2	chr2	136893233	136894233	+	598.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028834, intron 1 of 7)	MIR|SINE|MIR	1565.0	NM_001355669	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122507900-2	chr8	122507400	122508400	+	598.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037298, intron 2 of 50)	intron (NM_001037298, intron 2 of 50)	31757.0	NR_152823	66965.0	Mm.482288	NM_153775	ENSMUSG00000049482	Ctu2	2310061F22Rik|C16orf84|Ncs2	cytosolic thiouridylase subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr10-81348028-2	chr10	81347528	81348528	+	598.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_010440, exon 5 of 9)	exon (NM_010440, exon 5 of 9)	2398.0	NM_001163165	15353.0	Mm.38474	NM_010440	ENSMUSG00000020232	Hmg20b	AW610687|BRAF35|Hmgx2|Hmgxb2|Smarce1r	high mobility group 20B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53103285-2	chr4	53102822	53103822	+	598.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 7 of 49)	(CA)n|Simple_repeat|Simple_repeat	56573.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72374542-2	chr6	72374042	72375042	+	598.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_016872, intron 1 of 2)	intron (NM_016872, intron 1 of 2)	5926.0	NM_001080742	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7724448-2	chr10	7723895	7724895	+	598.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-1605.0	NM_011835	23924.0	Mm.28127	NM_011835	ENSMUSG00000019794	Katna1	-	katanin p60 (ATPase-containing) subunit A1	protein-coding	0.0	0.0	0.0	0.0	7.0	0.0
Merged-chr5-137530355-2	chr5	137529855	137530855	+	598.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105846)	promoter-TSS (NR_105846)	-761.0	NR_105846	102465227.0		NR_105846	ENSMUSG00000098597	Mir6418	Gm27629|mir-6418|mmu-mir-6418	microRNA 6418	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-29837398-2	chr16	29836898	29837898	+	598.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	141726.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36836207-2	chr5	36835707	36836707	+	598.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5558.0	NM_008550	17160.0	Mm.761	NM_008550	ENSMUSG00000029119	Man2b2	mKIAA0935	mannosidase 2, alpha B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61639967-2	chr18	61639467	61640467	+	598.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_045420, intron 1 of 2)	intron (NR_045420, intron 1 of 2)	314.0	NR_045420	545261.0	Mm.426593	NR_045420	ENSMUSG00000098098	Bvht	Braveheart|Gm20748	braveheart long non-coding RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-30010001-1	chr17	30009501	30010501	+	598.0	f1_c57bl6.idr	intron (NR_151443, intron 1 of 4)	Lx8|LINE|L1	4962.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0.0	3.5	5.0	11.0	0.0	2.5
Merged-chr14-93245599-1	chr14	93245099	93246099	+	598.0	f1_c57bl6.idr	intron (NM_001271800, intron 3 of 3)	Lx7|LINE|L1	645070.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	1.5	0.0	3.0	2.5	4.0	0.0
Merged-chr9-41179598-2	chr9	41179091	41180091	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21529.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	2.5	8.0	11.5	0.0	4.0	11.5
Merged-chr8-92364615-1	chr8	92364115	92365115	+	598.0	f1_balb.idr	Intergenic	Intergenic	6819.0	NM_018826	54352.0	Mm.101153	NM_018826	ENSMUSG00000031737	Irx5	-	Iroquois homeobox 5	protein-coding	5.0	4.0	2.5	2.5	10.0	0.5
Merged-chr6-21977317-2	chr6	21976817	21977817	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8593.0	NM_001081351	214642.0	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25577465-2	chr2	25576965	25577965	+	598.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001005424, exon 1 of 1)	exon (NM_001005424, exon 1 of 1)	-2594.0	NM_029293	75454.0	Mm.458079	NM_029293	ENSMUSG00000036504	Phpt1	1700008C22Rik|PHP|Php14	phosphohistidine phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101289392-2	chr15	101288892	101289892	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026566, intron 2 of 2)	ORR1D1|LTR|ERVL-MaLR	-3820.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107581439-2	chr11	107580947	107581947	+	598.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_198298, intron 4 of 31)	intron (NM_198298, intron 4 of 31)	33487.0	NM_198298	78455.0	Mm.272047	NM_198298	ENSMUSG00000020721	Helz	3110078M01Rik|9430093I07Rik|9630002H22Rik|AI851979|DRHC	helicase with zinc finger domain	protein-coding	0.0	0.0	4.0	0.5	1.0	4.0
Merged-chr13-30547018-2	chr13	30546518	30547518	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1702.0	NM_025710	66694.0	Mm.181933	NM_025710	ENSMUSG00000038462	Uqcrfs1	4430402G14Rik|AI875505	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51629212-1	chr3	51628712	51629712	+	598.0	f0_balb.idr	Intergenic	Intergenic	-31967.0	NM_174995	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-126792237-2	chr6	126791747	126792747	+	598.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-51573.0	NM_013568	16494.0	Mm.62535	NM_013568	ENSMUSG00000038077	Kcna6	Kv1.6|MK1.6	potassium voltage-gated channel, shaker-related, subfamily, member 6	protein-coding	2.5	1.0	2.0	6.0	3.0	1.0
Merged-chr6-28822343-1	chr6	28821843	28822843	+	598.0	f0_balb.idr	intron (NM_019776, intron 16 of 23)	intron (NM_019776, intron 16 of 23)	9404.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149295791-2	chr4	149295291	149296291	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008441, intron 1 of 20)	intron (NM_008441, intron 1 of 20)	11907.0	NM_207682	16561.0	Mm.402393	NM_008441	ENSMUSG00000063077	Kif1b	A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204	kinesin family member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-129016629-1	chr5	129016129	129017129	+	598.0	f0_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-3527.0	NM_009391	19384.0	Mm.297440	NM_009391	ENSMUSG00000029430	Ran	-	RAN, member RAS oncogene family	protein-coding	0.5	5.5	1.0	6.5	5.5	3.0
Merged-chr8-35677363-1	chr8	35676863	35677863	+	598.0	f1_balb.idr	3' UTR (NM_001081279, exon 3 of 3)	3' UTR (NM_001081279, exon 3 of 3)	-88343.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	5.5	3.5	4.5	12.0	3.0	3.5
Merged-chr11-51633453-2	chr11	51632953	51633953	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025346, intron 1 of 9)	RSINE1|SINE|B4	2443.0	NM_025346	66089.0	Mm.288183	NM_025346	ENSMUSG00000001054	Rmnd5b	0610039K22Rik|Gid2	required for meiotic nuclear division 5 homolog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45526670-2	chr4	45526170	45527170	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 1 of 5)	Lx8|LINE|L1	4158.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144242274-3	chr3	144241780	144242780	+	598.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37025.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-48571470-1	chr6	48570970	48571970	+	598.0	f1_c57bl6.idr	TTS (NM_177736)	TTS (NM_177736)	1332.0	NM_001347168	71660.0	Mm.28231	NM_027852	ENSMUSG00000009281	Rarres2	0610007L05Rik|AI303516	retinoic acid receptor responder (tazarotene induced) 2	protein-coding	3.0	3.0	4.0	3.0	1.5	0.5
Merged-chr1-131062178-1	chr1	131061678	131062678	+	598.0	f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	35665.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0.5	1.5	6.5	2.0	6.5	3.5
Merged-chr9-38608867-1	chr9	38608367	38609367	+	598.0	f1_balb.idr	Intergenic	Intergenic	2400.0	NM_146786	258782.0	Mm.390144	NM_146786	ENSMUSG00000047050	Olfr914	MOR165-7	olfactory receptor 914	protein-coding	0.0	0.0	0.0	0.0	2.5	1.0
Merged-chr10-41959515-2	chr10	41959015	41960015	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 10 of 17)	intron (NM_001034858, intron 10 of 17)	58867.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134532718-2	chr1	134532218	134533218	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	16964.0	NM_001145300	71001.0	Mm.158529	NM_183292	ENSMUSG00000046367	Mgat4e	4931440L10Rik	MGAT4 family, member E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40154991-2	chr4	40154491	40155491	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007386, intron 1 of 20)	intron (NM_007386, intron 1 of 20)	11726.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0.0	0.5	0.0	0.0	0.0	0.5
Merged-chr13-60625967-1	chr13	60625467	60626467	+	598.0	f0_balb.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	23756.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19065832-2	chr7	19065332	19066332	+	598.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_031255, exon 3 of 6)	exon (NM_031255, exon 3 of 6)	-10368.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106215659-1	chr11	106215159	106216159	+	598.0	f1_c57bl6.idr	intron (NM_026009, intron 1 of 12)	intron (NM_026009, intron 1 of 12)	708.0	NM_026009	67163.0	Mm.22109	NM_026009	ENSMUSG00000078622	Ccdc47	2610204L23Rik|C88307|asp4|calumin	coiled-coil domain containing 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35166279-2	chr7	35165779	35166779	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20106.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	3.5	0.0	2.0	2.0	0.0	0.0
Merged-chr1-148258818-1	chr1	148258318	148259318	+	598.0	f1_balb.idr	Intergenic	L1Md_F2|LINE|L1	1663621.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-103955675-1	chr13	103955175	103956175	+	598.0	f0_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-35089.0	NM_001005868	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86493283-1	chr17	86492783	86493783	+	598.0	f0_balb.idr	exon (NM_011104, exon 9 of 15)	exon (NM_011104, exon 9 of 15)	-206105.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	0.0	0.0	0.0	1.5	0.0	2.0
Merged-chr9-90250461-2	chr9	90249961	90250961	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	Lx8|LINE|L1	20308.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25611105-2	chr14	25610605	25611605	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 6 of 23)	intron (NM_183208, intron 6 of 23)	7592.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128345483-2	chr10	128344983	128345983	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026444, intron 1 of 10)	intron (NM_026444, intron 1 of 10)	7756.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64588877-2	chr17	64588377	64589377	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	-12772.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50135754-2	chr11	50135254	50136254	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029745, intron 1 of 20)	intron (NM_029745, intron 1 of 20)	4394.0	NM_029745	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61082316-3	chr18	61081809	61082809	+	598.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008809, intron 22 of 22)	intron (NM_008809, intron 22 of 22)	-23263.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101732078-2	chr11	101731578	101732578	+	598.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144831)	promoter-TSS (NM_144831)	-878.0	NM_144831	217207.0	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-38064692-2	chr7	38064193	38065193	+	598.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	42797.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	9.0	0.0	2.0	9.0	0.5	2.0
Merged-chr9-78519177-1	chr9	78518677	78519677	+	598.0	f1_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	-37453.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57459443-2	chr17	57458943	57459943	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 17 of 22)	RMER1B|Other|Other	85871.0	NM_001104591	224916.0	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33814852-1	chr17	33814352	33815352	+	598.0	f1_c57bl6.idr	intron (NM_030697, intron 1 of 10)	intron (NM_030697, intron 1 of 10)	4329.0	NM_030697	80880.0	Mm.196330	NM_030697	ENSMUSG00000042099	Kank3	0610013D04Rik|Ankrd47|D17Ertd288e|NG28	KN motif and ankyrin repeat domains 3	protein-coding	0.0	3.0	4.0	0.0	1.5	6.5
Merged-chr2-38354327-2	chr2	38353827	38354827	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290646, intron 2 of 4)	intron (NM_001290646, intron 2 of 4)	3019.0	NM_010710	16870.0	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47739894-1	chr6	47739394	47740394	+	598.0	f0_c57.idr	Intergenic	4.5SRNA|scRNA|scRNA	4337.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180799267-2	chr1	180798767	180799767	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	14338.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-51102090-1	chr9	51101590	51102590	+	598.0	f0_balb.idr	promoter-TSS (NM_177702)	promoter-TSS (NM_177702)	-12.0	NM_177702	235345.0	Mm.72828	NM_177702	ENSMUSG00000032057	4833427G06Rik	-	RIKEN cDNA 4833427G06 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-137416101-2	chr6	137415601	137416601	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 14 of 26)	intron (NM_011216, intron 14 of 26)	5380.0	NM_001164403	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-59775145-2	chr12	59774645	59775645	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR10D2|LTR|ERVK	-555662.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	0.0	10.0	0.0	0.0	7.0	1.0
Merged-chr17-46258851-2	chr17	46258351	46259351	+	598.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001252473, exon 10 of 10)	exon (NM_001252473, exon 10 of 10)	4686.0	NM_001111142	224813.0	Mm.70999	NM_001111142	ENSMUSG00000071073	Lrrc73	Gm88	leucine rich repeat containing 73	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-129965896-1	chr5	129965396	129966396	+	598.0	f0_balb.idr	intron (NM_001001327, intron 1 of 1)	RSINE1|SINE|B4	23787.0	NM_027121	69568.0	Mm.288718	NM_027121	ENSMUSG00000066735	Vkorc1l1	2310024K08Rik	vitamin K epoxide reductase complex, subunit 1-like 1	protein-coding	0.0	0.0	2.0	0.0	3.5	3.5
Merged-chr8-46469729-2	chr8	46469229	46470229	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1308.0	NM_007981	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-116535604-1	chr14	116535104	116536104	+	598.0	f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-389693.0	NM_001079844	23888.0	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3377389-2	chr12	3376889	3377889	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008445, intron 1 of 7)	B3|SINE|B2	12257.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-72301998-2	chr1	72301498	72302498	+	598.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175564, exon 3 of 3)	3' UTR (NM_175564, exon 3 of 3)	-5423.0	NM_001357520	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-35299996-2	chr11	35299496	35300496	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011412, intron 4 of 35)	intron (NM_011412, intron 4 of 35)	178540.0	NM_011412	20564.0	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit guidance ligand 3	protein-coding	0.0	0.0	0.5	0.0	2.0	0.5
Merged-chr15-83035700-2	chr15	83035200	83036200	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2303.0	NM_001271411	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137307063-1	chr5	137306563	137307563	+	598.0	f1_balb.idr	exon (NM_031405, exon 2 of 20)	exon (NM_031405, exon 2 of 20)	611.0	NM_031405	83701.0	Mm.387734	NM_031405	ENSMUSG00000037364	Srrt	2810019G02Rik|ASR2A|ASR2B|ASR2C|ASR2D|Ars2|Asr2	serrate RNA effector molecule homolog (Arabidopsis)	protein-coding	2.5	33.5	9.0	6.5	15.5	32.0
Merged-chr3-48612944-1	chr3	48612444	48613444	+	598.0	f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-3844.0	NR_003617	66332.0	Mm.46124	NM_025493		1700018B24Rik	-	enhancer of rudimentary homolog pseudogene	pseudo	5.5	0.0	1.0	0.0	0.0	5.0
Merged-chr10-128366732-2	chr10	128366232	128367232	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081040, intron 2 of 4)	intron (NM_001081040, intron 2 of 4)	3305.0	NM_001081040	210582.0	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-13784228-1	chr13	13783728	13784728	+	598.0	f0_balb.idr	promoter-TSS (NM_010317)	promoter-TSS (NM_010317)	-79.0	NM_010317	14706.0	Mm.215394	NM_010317	ENSMUSG00000021303	Gng4	-	guanine nucleotide binding protein (G protein), gamma 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-6965077-1	chr3	6964577	6965577	+	598.0	f1_balb.idr	Intergenic	Lx3_Mus|LINE|L1	-344634.0	NM_027048	69347.0	Mm.45822	NM_027048	ENSMUSG00000069118	1700008P02Rik	-	RIKEN cDNA 1700008P02 gene	protein-coding	1.0	0.0	1.0	0.0	0.0	0.0
Merged-chr12-112692904-2	chr12	112692404	112693404	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14064.0	NM_001100460	382639.0	Mm.11350	NM_001100460	ENSMUSG00000037638	Zbtb42	EG382639|Gm5188|simiRP58	zinc finger and BTB domain containing 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63405890-2	chr4	63405390	63406390	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2445.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56287981-2	chr17	56287481	56288481	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025836, intron 1 of 7)	intron (NM_025836, intron 1 of 7)	2530.0	NM_025836	66905.0	Mm.311696	NM_025836	ENSMUSG00000024197	Plin3	1300012C15Rik|M6prbp1|Tip47	perilipin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-24488566-2	chr14	24488066	24489066	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1508.0	NM_001081247	218832.0	Mm.343610	NM_183157	ENSMUSG00000025280	Polr3a	9330175N20Rik|BC053071|RPC1|RPC155	polymerase (RNA) III (DNA directed) polypeptide A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128516331-2	chr10	128515831	128516831	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011843, intron 21 of 30)	intron (NM_011843, intron 21 of 30)	-4301.0	NR_105881	102465552.0		NR_105881	ENSMUSG00000099292	Mir6916	Gm27721|mmu-mir-6916	microRNA 6916	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-42670055-2	chr11	42669555	42670555	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	248705.0	NM_001347314	14401.0	Mm.338723	NM_008070	ENSMUSG00000007653	Gabrb2	AI834970|C030002O17Rik|C030021G16Rik|Gabrab2|Gabrb-2	gamma-aminobutyric acid (GABA) A receptor, subunit beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-72427847-2	chr12	72427347	72428347	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14019.0	NM_001142728	78257.0	Mm.266280	NM_030070	ENSMUSG00000021090	Lrrc9	4921529O18Rik|4930432K16Rik	leucine rich repeat containing 9	protein-coding	1.0	0.5	2.0	2.5	0.0	1.0
Merged-chr1-182108693-1	chr1	182108193	182109193	+	598.0	f0_balb.idr	Intergenic	Intergenic	-16044.0	NM_012058	27058.0	Mm.273196	NM_012058	ENSMUSG00000026511	Srp9	9kDa	signal recognition particle 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-39195825-1	chr16	39195325	39196325	+	598.0	f1_c57bl6.idr	Intergenic	ERVL-E-int|LTR|ERVL	-6875.0	NR_153800	102640746.0		NR_153800		Gm36742	-	predicted gene, 36742	ncRNA	5.5	0.0	12.0	1.0	6.5	6.0
Merged-chr7-105412042-1	chr7	105411542	105412542	+	598.0	f0_c57.idr	Intergenic	Intergenic	7474.0	NM_001033317	233649.0	Mm.99556	NM_001033317	ENSMUSG00000030897	Cnga4	-	cyclic nucleotide gated channel alpha 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-118217567-1	chr4	118217067	118218067	+	598.0	f1_balb.idr	intron (NM_011213, intron 21 of 32)	intron (NM_011213, intron 21 of 32)	-7003.0	NR_106085	102466820.0		NR_106085	ENSMUSG00000098596	Mir7226	Gm27630|mmu-mir-7226	microRNA 7226	ncRNA	0.0	0.5	0.0	3.5	0.5	0.0
Merged-chr2-125684116-2	chr2	125683586	125684586	+	598.0	f0_balb.idr|f1_balb.idr	intron (NM_199022, intron 2 of 11)	intron (NM_199022, intron 2 of 11)	10986.0	NM_025613	58521.0	Mm.425101	NM_025613	ENSMUSG00000091337	Eid1	2610002K20Rik|Cri1|EID-1|ORF12|PNAS-22|PTD014	EP300 interacting inhibitor of differentiation 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54783257-2	chr14	54782798	54783798	+	598.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1412.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	8.0	24.0	19.5	8.0	18.5	15.5
Merged-chr11-118512315-2	chr11	118511815	118512815	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024931, intron 5 of 14)	intron (NM_001024931, intron 5 of 14)	35483.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25363935-1	chr17	25363435	25364435	+	598.0	f1_c57bl6.idr	Intergenic	Intergenic	-2398.0	NM_010781	17229.0	Mm.7409	NM_010781	ENSMUSG00000033825	Tpsb2	AV011504|MMCP-6|Mcp-6|Mcp6|Mcpt6	tryptase beta 2	protein-coding	7.0	0.0	0.0	2.5	1.0	3.0
Merged-chr4-141627974-1	chr4	141627474	141628474	+	598.0	f1_balb.idr	exon (NM_001033150, exon 18 of 20)	exon (NM_001033150, exon 18 of 20)	-4140.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27755614-2	chr2	27755114	27756114	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 7 of 9)	intron (NM_001290481, intron 7 of 9)	45031.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153149011-2	chr2	153148511	153149511	+	598.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010407, exon 12 of 13)	exon (NM_010407, exon 12 of 13)	-12290.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-12814056-1	chr10	12813556	12814556	+	598.0	f0_balb.idr	intron (NM_011682, intron 1 of 73)	intron (NM_011682, intron 1 of 73)	47679.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	11.5	22.5	8.0	15.5	15.5	11.5
Merged-chr4-3612084-2	chr4	3611584	3612584	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054089, intron 12 of 12)	intron (NM_054089, intron 12 of 12)	37205.0	NM_054089	116940.0	Mm.171323	NM_054089	ENSMUSG00000028233	Tgs1	D4Ertd800e|Ncoa6ip|Pimt	trimethylguanosine synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90565383-2	chr16	90564883	90565883	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161988.0	NM_025642	66578.0	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35178222-2	chr17	35177723	35178723	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2171.0	NM_001361501	11629.0	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	0.0	6.0	0.0	0.0	3.0	0.0
Merged-chr7-28302343-2	chr7	28301843	28302843	+	598.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007866)	promoter-TSS (NM_007866)	-558.0	NM_007866	13389.0	Mm.12896	NM_007866	ENSMUSG00000003436	Dll3	pu|pudgy	delta like canonical Notch ligand 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6943939-2	chr19	6943439	6944439	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285453, intron 2 of 3)	intron (NM_001285453, intron 2 of 3)	1377.0	NM_001285453	12015.0	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10049765-1	chr19	10049265	10050265	+	598.0	f1_c57bl6.idr	intron (NM_021890, intron 1 of 11)	intron (NM_021890, intron 1 of 11)	8217.0	NM_021890	60527.0	Mm.253875	NM_021890	ENSMUSG00000024664	Fads3	AI464531	fatty acid desaturase 3	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr8-70520208-1	chr8	70519708	70520708	+	598.0	f1_c57bl6.idr	intron (NM_029366, intron 1 of 4)	PB1D11|SINE|Alu	2972.0	NM_029366	75620.0	Mm.482129	NM_029366	ENSMUSG00000055553	Kxd1	0610030B01Rik|2810422J05Rik|C78305	KxDL motif containing 1	protein-coding	2.5	1.5	0.0	0.0	5.0	0.5
Merged-chr10-14034217-1	chr10	14033717	14034717	+	598.0	f0_balb.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	67838.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	1.5	2.0	4.5	1.0	0.0	0.0
Merged-chr3-37150352-2	chr3	37149852	37150852	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24398.0	NM_008366	16183.0	Mm.14190	NM_008366	ENSMUSG00000027720	Il2	Il-2	interleukin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83020938-1	chr6	83020438	83021438	+	598.0	f1_balb.idr	intron (NM_033079, intron 7 of 9)	ORR1F|LTR|ERVL-MaLR	12533.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	0.0	0.0	6.0	0.0	1.5	0.5
Merged-chr11-69400413-2	chr11	69399907	69400907	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001017426, intron 20 of 22)	intron (NM_001017426, intron 20 of 22)	-2173.0	NM_025915	67020.0	Mm.390406	NM_025915	ENSMUSG00000045377	Tmem88	2600017H02Rik	transmembrane protein 88	protein-coding	0.0	4.0	2.0	1.0	0.0	0.0
Merged-chr6-101617654-2	chr6	101617154	101618154	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-156595.0	NR_027989	207157.0	Mm.57632	NM_177579	ENSMUSG00000052236	Gm9871	0610005I04|EG207157	predicted gene 9871	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-99317595-1	chr13	99317095	99318095	+	598.0	f0_balb.idr	Intergenic	Intergenic	27083.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	4.5	9.0	4.0	15.5	0.0	3.0
Merged-chr5-122267347-2	chr5	122266847	122267847	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2887.0	NM_001039153	654470.0	Mm.28804	NM_001039153	ENSMUSG00000038593	Tctn1	G730031O11Rik|Tect1	tectonic family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-156811492-1	chr3	156810992	156811992	+	598.0	f1_c57bl6.idr	intron (NM_001039094, intron 1 of 6)	RMER17A2|LTR|ERVK	249698.0	NM_001039094	320840.0	Mm.317293	NM_177274	ENSMUSG00000040037	Negr1	5330422G01Rik|KILON|Ntra	neuronal growth regulator 1	protein-coding	0.0	0.0	0.0	0.0	2.5	1.0
Merged-chr17-48042141-2	chr17	48041641	48042641	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3848.0	NM_029689	76651.0	Mm.76918	NM_029689	ENSMUSG00000094928	1700122O11Rik	-	RIKEN cDNA 1700122O11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46912513-2	chr17	46912013	46913013	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008938, intron 1 of 2)	intron (NM_008938, intron 1 of 2)	2028.0	NM_008938	19133.0	Mm.291370	NM_008938	ENSMUSG00000023978	Prph2	AOFMD|AVMD|Nmf193|PRPH|RP7|Rd-2|Rd2|Rds|Tspan22|rds	peripherin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132540407-2	chr4	132539907	132540907	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172400, intron 2 of 8)	intron (NM_172400, intron 2 of 8)	4848.0	NM_172400	68598.0	Mm.29685	NM_172400	ENSMUSG00000054405	Dnajc8	1110021D09Rik|2010009J04Rik|AL024084|AU019262|AU044514	DnaJ heat shock protein family (Hsp40) member C8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-104370835-2	chr7	104370330	104371330	+	598.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-12184.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	42.5	67.5	75.0	53.5	130.5	65.5
Merged-chr12-118282239-2	chr12	118281739	118282739	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166385, intron 3 of 5)	MER74A|LTR|ERVL	19201.0	NM_009239	20688.0	Mm.34699	NM_009239	ENSMUSG00000025323	Sp4	5730497N03Rik|HF-1b|HF1-b	trans-acting transcription factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-52415862-2	chr10	52415362	52416362	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1685.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75434840-2	chr10	75434340	75435340	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133995, intron 6 of 9)	intron (NM_133995, intron 6 of 9)	-14670.0	NR_045841	71125.0	Mm.399516	NR_045841		4933407G14Rik	-	RIKEN cDNA 4933407G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118112746-1	chr7	118112246	118113246	+	598.0	f1_balb.idr	intron (NM_170669, intron 3 of 4)	ORR1A2-int|LTR|ERVL-MaLR	3401.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	2.0	1.5	1.5	0.0	5.5	0.5
Merged-chr1-171249944-1	chr1	171249444	171250444	+	598.0	f1_c57bl6.idr	promoter-TSS (NM_172845)	promoter-TSS (NM_172845)	-185.0	NM_172845	240913.0	Mm.491147	NM_172845	ENSMUSG00000006403	Adamts4	ADAM-TS4|ADAMTS-2|ADMP-1	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4	protein-coding	13.5	0.5	1.0	0.0	0.0	3.0
Merged-chr14-104028834-1	chr14	104028334	104029334	+	598.0	f0_balb.idr	Intergenic	Intergenic	-1692.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40581329-1	chr19	40580829	40581829	+	598.0	f1_balb.idr	intron (NM_153554, intron 3 of 18)	ID_B1|SINE|B4	7134.0	NM_019698	56454.0	Mm.233117	NM_019698	ENSMUSG00000025007	Aldh18a1	2810433K04Rik|AI429789|Pycs	aldehyde dehydrogenase 18 family, member A1	protein-coding	2.0	3.0	2.5	6.0	0.0	3.0
Merged-chr7-98722027-1	chr7	98721527	98722527	+	598.0	f1_balb.idr	Intergenic	Intergenic	18780.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	0.0	3.5	0.0	0.0	0.0	0.0
Merged-chr9-107278737-1	chr9	107278237	107279237	+	598.0	f0_c57.idr	intron (NM_001316691, intron 1 of 7)	intron (NM_001316691, intron 1 of 7)	10659.0	NM_001316691	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	3.5	4.0	0.0	4.5	0.0	3.5
Merged-chr4-140699329-2	chr4	140698829	140699829	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2144.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	1.0	3.0	2.0	8.0	7.5	21.0
Merged-chr6-56894492-1	chr6	56893992	56894992	+	598.0	f0_balb.idr	intron (NM_026004, intron 1 of 8)	intron (NM_026004, intron 1 of 8)	7394.0	NM_001252374	107569.0	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|P5'N-1|P5N-1|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86603342-2	chr11	86602842	86603842	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 9 of 11)	intron (NM_001356531, intron 9 of 11)	-19184.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132622773-1	chr4	132622273	132623273	+	598.0	f1_balb.idr	Intergenic	Intergenic	-16273.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	7.5	2.5	14.5	2.5	3.0	14.0
Merged-chr4-149648404-2	chr4	149647904	149648904	+	598.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164052)	TTS (NM_001164052)	7163.0	NR_105990	102465983.0		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	0.0	1.0	3.0	3.5	4.0	0.5
Merged-chr10-127606680-1	chr10	127606180	127607180	+	598.0	f0_balb.idr	intron (NM_008512, intron 4 of 88)	B3|SINE|B2	14468.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	60.0	204.5	95.5	73.5	198.0	142.5
Merged-chr10-67282005-2	chr10	67281505	67282505	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001036293, intron 1 of 3)	intron (NM_001036293, intron 1 of 3)	3276.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28630984-1	chr7	28630484	28631484	+	598.0	f1_balb.idr	promoter-TSS (NM_175319)	promoter-TSS (NM_175319)	31.0	NM_175319	101744.0	Mm.26022	NM_175319	ENSMUSG00000037469	Acp7	AU017076|C330005M16Rik|Papl	acid phosphatase 7, tartrate resistant	protein-coding	0.0	0.0	2.0	0.0	0.0	2.0
Merged-chr15-25486250-2	chr15	25485750	25486750	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72058.0	NR_027376	432939.0	Mm.146555	NM_001013791		Gm5468	100040583|EG432939	predicted gene 5468	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-55040743-3	chr18	55040304	55041304	+	597.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48213.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24965695-3	chr13	24965184	24966184	+	597.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008156, intron 11 of 25)	ERVB7_2-LTR_MM|LTR|ERVK	22532.0	NM_008156	14756.0	Mm.291831	NM_008156	ENSMUSG00000021340	Gpld1	6330541J12Rik|AW546131	glycosylphosphatidylinositol specific phospholipase D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184716444-2	chr1	184715992	184716992	+	597.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_040627, intron 2 of 2)	intron (NR_040627, intron 2 of 2)	3995.0	NR_040627	74971.0	Mm.410816	NR_040627	ENSMUSG00000092578	4930488B22Rik	-	RIKEN cDNA 4930488B22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-27113285-2	chr8	27112785	27113785	+	597.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_054044, intron 8 of 18)	intron (NM_054044, intron 8 of 18)	15347.0	NM_025686	66653.0	Mm.334467	NM_025686	ENSMUSG00000031487	Brf2	2700059M06Rik|5730512K07Rik|AU018504|AU022602|BRFU|TFIIIB50	BRF2, RNA polymerase III transcription initiation factor 50kDa subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-96532120-4	chr5	96531601	96532601	+	597.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175473, intron 3 of 73)	L2a|LINE|L2	158146.0	NM_175473	231470.0	Mm.291120	NM_175473	ENSMUSG00000034687	Fras1	E130113P14Rik|bl|mKIAA1500	Fraser extracellular matrix complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-33957032-3	chr13	33956514	33957514	+	597.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040707, intron 3 of 4)	intron (NR_040707, intron 3 of 4)	-7645.0	NM_001163239	18105.0	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	N-ribosyldihydronicotinamide quinone reductase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180261413-2	chr2	180260913	180261913	+	597.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_145851, intron 6 of 9)	intron (NM_145851, intron 6 of 9)	3877.0	NR_037274	100526556.0		NR_037274	ENSMUSG00000092827	Mir3091	mir-3091|mmu-mir-3091	microRNA 3091	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142263900-3	chr3	142263393	142264393	+	597.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190854, intron 8 of 12)	MTB_Mm|LTR|ERVL-MaLR	-94468.0	NM_001277216	12167.0	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44543731-3	chr11	44543228	44544228	+	597.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 4 of 5)	intron (NM_001166553, intron 4 of 5)	24351.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95685786-2	chr4	95685266	95686266	+	597.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_029347, intron 5 of 10)	C-rich|Low_complexity|Low_complexity	106345.0	NM_029347	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24885520-2	chr7	24885020	24886020	+	597.625	f1_balb.idr|f1_c57bl6.idr	exon (NM_001360119, exon 3 of 6)	exon (NM_001360119, exon 3 of 6)	607.0	NM_001360115	20085.0	Mm.300281	NM_023133	ENSMUSG00000040952	Rps19	Dsk3	ribosomal protein S19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-57088775-2	chr19	57088275	57089275	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001103177, intron 6 of 21)	intron (NM_001103177, intron 6 of 21)	30249.0	NM_001347459	226251.0	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	1.0	0.0	0.5	0.0	0.0	0.5
Merged-chr15-27595774-2	chr15	27595274	27596274	+	597.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_020332)	TTS (NM_020332)	24280.0	NR_106065	102466808.0		NR_106065	ENSMUSG00000098416	Mir7117	Gm27729|mmu-mir-7117	microRNA 7117	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-174443278-2	chr2	174442778	174443778	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4239.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29488085-2	chr17	29487585	29488585	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2960.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20848502-1	chr11	20848002	20849002	+	597.5	f0_balb.idr	Intergenic	Intergenic	-17394.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64922664-1	chr13	64922164	64923164	+	597.5	f0_balb.idr	exon (NM_030047, exon 3 of 3)	exon (NM_030047, exon 3 of 3)	5258.0	NM_030047	78124.0	Mm.342895	NM_030047	ENSMUSG00000056223	Spata31	4930458L03Rik|Aep1|Fam75a|Spata31a|Vad1.3	spermatogenesis associated 31	protein-coding	3.0	6.0	0.0	0.0	0.0	0.0
Merged-chr6-126910498-1	chr6	126909998	126910998	+	597.5	f0_balb.idr	intron (NM_207210, intron 2 of 14)	intron (NM_207210, intron 2 of 14)	11341.0	NM_207210	101320.0	Mm.44896	NM_207210	ENSMUSG00000030345	Dyrk4	AW049118|Dyrk4a|Dyrk4b	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4	protein-coding	70.0	137.5	106.0	63.0	160.5	95.0
Merged-chr13-12919756-2	chr13	12919256	12920256	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	85574.0	NM_031191	18811.0	Mm.88796	NM_031191	ENSMUSG00000079092	Prl2c2	Ghd2|MRP-1|PLF-1|Plf|Plf1	prolactin family 2, subfamily c, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-14135111-2	chr7	14134611	14135611	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-12118.0	NM_001101586	629203.0	Mm.482066	NM_001101586	ENSMUSG00000074375	Sult2a3	EG629203|Gm6955	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-18042261-2	chr14	18041761	18042761	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	60617.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	2.0	0.5	1.0
Merged-chr17-88160470-2	chr17	88159970	88160970	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR41|LTR|ERV1	34958.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-8670136-2	chr16	8669636	8670636	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025821, intron 1 of 3)	intron (NM_025821, intron 1 of 3)	2017.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-25015440-2	chr13	25014940	25015940	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013389, intron 2 of 10)	IAPEY4_LTR|LTR|ERVK	4877.0	NM_001013389	380836.0	Mm.387097	NM_001013389	ENSMUSG00000021339	Mrs2	Gm902|HPT|Mrs2l|RPT	MRS2 magnesium transporter	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66799941-2	chr15	66799441	66800441	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029841, intron 2 of 7)	intron (NM_001029841, intron 2 of 7)	31888.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47963540-2	chr6	47963040	47964040	+	597.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_178898, exon 5 of 5)	exon (NM_178898, exon 5 of 5)	10150.0	NM_178898	101197.0	Mm.241063	NM_178898	ENSMUSG00000045466	Zfp956	AI894139	zinc finger protein 956	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-68443921-2	chr1	68443403	68444403	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010154, intron 3 of 26)	Lx9|LINE|L1	664156.0	NM_010154	13869.0	Mm.442420	NM_010154	ENSMUSG00000062209	Erbb4	Her4|c-erbB-4	erb-b2 receptor tyrosine kinase 4	protein-coding	3.5	15.0	1.5	3.0	7.0	2.0
Merged-chr14-30586904-2	chr14	30586404	30587404	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14755.0	NR_037237	100526475.0		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102768125-2	chr2	102767625	102768625	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077514, intron 9 of 10)	intron (NM_001077514, intron 9 of 10)	-21365.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47460766-2	chr19	47460318	47461318	+	597.5	f0_balb.idr|f1_balb.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	3593.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	7.5	3.0	6.0	9.0	4.0	8.5
Merged-chr1-170708361-2	chr1	170707861	170708861	+	597.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081304, exon 16 of 16)	3' UTR (NM_001081304, exon 16 of 16)	63829.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-71162406-2	chr3	71161906	71162906	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	-355115.0	NR_040556	625901.0	Mm.366028	NR_040556	ENSMUSG00000097252	Gm6634	EG625901	predicted gene 6634	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155011470-1	chr2	155010970	155011970	+	597.5	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2100.0	NM_015770	50518.0	Mm.315593	NM_015770	ENSMUSG00000027596	a	A<y>|ASIP|ASP|As	nonagouti	protein-coding	7.5	8.5	0.0	7.0	3.5	3.0
Merged-chr16-78202030-2	chr16	78201530	78202530	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53424.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31410739-2	chr15	31410239	31411239	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	42950.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75315866-2	chr10	75315366	75316366	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1011.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95005958-2	chr8	95005458	95006458	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018882, intron 5 of 13)	intron (NM_018882, intron 5 of 13)	-11734.0	NM_173036	54672.0	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50564842-2	chr9	50564342	50565342	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008360, intron 2 of 7)	intron (NM_008360, intron 2 of 7)	-3574.0	NM_025687	66654.0	Mm.442255	NM_025687	ENSMUSG00000032065	Tex12	5730518K06Rik	testis expressed gene 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51313420-2	chr13	51312920	51313920	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95198.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122408445-2	chr8	122407945	122408945	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029993, intron 11 of 18)	intron (NM_001029993, intron 11 of 18)	-13575.0	NM_145834	234836.0	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-69537533-2	chr13	69537033	69538033	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3669.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	0.5	2.0	0.0	13.0	4.5	6.5
Merged-chr8-117395268-2	chr8	117394768	117395768	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 3 of 20)	intron (NM_028941, intron 3 of 20)	46098.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87784672-2	chr16	87784172	87785172	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85718.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19471912-2	chr7	19471412	19472412	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-13418.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	1.0	0.0	8.5	0.0	0.5	2.0
Merged-chr7-118344961-2	chr7	118344461	118345461	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	98599.0	NM_001362180	110058.0	Mm.156558	NM_138649	ENSMUSG00000058420	Syt17	Bk|sytXVII	synaptotagmin XVII	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152928368-2	chr2	152927868	152928868	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4840.0	NM_010226	14239.0	Mm.205798	NM_010226	ENSMUSG00000074676	Foxs1	FREAC10|Fkh3|Fkhl18	forkhead box S1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141091862-2	chr7	141091362	141092362	+	597.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_023059, exon 9 of 10)	exon (NM_023059, exon 9 of 10)	8684.0	NM_023059	24058.0	Mm.38017	NM_023059	ENSMUSG00000025494	Sigirr	AI256711|TIR8	single immunoglobulin and toll-interleukin 1 receptor (TIR) domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10251276-2	chr19	10250776	10251776	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 17 of 19)	intron (NM_198114, intron 17 of 19)	-10528.0	NM_001033481	225908.0	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90301956-2	chr16	90301456	90302456	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-17453.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81502427-2	chr15	81501927	81502927	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	36111.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145312025-2	chr6	145311525	145312525	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	61473.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	0.0	1.5	1.0	0.0	1.0	1.0
Merged-chr12-86898647-2	chr12	86898147	86899147	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-13833.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25574165-2	chr14	25573665	25574665	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 4 of 23)	intron (NM_183208, intron 4 of 23)	-12639.0	NR_033492	77592.0	Mm.444871	NM_175264		4931406H21Rik	-	RIKEN cDNA 4931406H21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr9-120572915-2	chr9	120572415	120573415	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025974, intron 3 of 5)	intron (NM_025974, intron 3 of 5)	1398.0	NM_025974	67115.0	Mm.289810	NM_025974	ENSMUSG00000025794	Rpl14	3100001N19Rik|AA407502|AL022816|CAG-ISL-7|CTG-B33|L14	ribosomal protein L14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-156106054-2	chr4	156105554	156106554	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3944.0	NM_145557	230996.0	Mm.318925	NM_145557	ENSMUSG00000059939	9430015G10Rik	-	RIKEN cDNA 9430015G10 gene	protein-coding	3.0	0.0	0.0	4.0	2.0	0.0
Merged-chr4-117270489-2	chr4	117269985	117270985	+	597.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025739)	TTS (NM_025739)	18145.0	NM_029589	68777.0	Mm.331805	NM_026837	ENSMUSG00000048772	Tmem53	1110038M16Rik|1500001P22Rik|1700012A05Rik	transmembrane protein 53	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-18881488-2	chr5	18880988	18881988	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	345067.0	NR_102341	70832.0	Mm.398993	NR_102341	ENSMUSG00000097626	4921504A21Rik	-	RIKEN cDNA 4921504A21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120576283-2	chr11	120575783	120576783	+	597.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133796)	TTS (NM_133796)	-3030.0	NM_011032	18453.0	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	4.0	11.0	3.5	3.5	13.0	2.0
Merged-chr19-6670541-2	chr19	6670041	6671041	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-127471.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19208078-2	chr7	19207578	19208578	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4460.0	NM_175668	319197.0	Mm.135984	NM_175668	ENSMUSG00000044317	Gpr4	-	G protein-coupled receptor 4	protein-coding	5.0	3.5	0.0	0.0	1.5	4.0
Merged-chr7-136978524-2	chr7	136978031	136979031	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008598, intron 2 of 4)	intron (NM_008598, intron 2 of 4)	83920.0	NM_008598	17314.0	Mm.440219	NM_008598	ENSMUSG00000054612	Mgmt	AGT|AI267024|Agat	O-6-methylguanine-DNA methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119106766-4	chr2	119106276	119107276	+	597.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6041.0	NM_011234	19361.0	Mm.330492	NM_011234	ENSMUSG00000027323	Rad51	AV304093|Rad51a|Reca	RAD51 recombinase	protein-coding	1.0	3.0	2.0	0.0	2.0	0.5
Merged-chr10-62202020-2	chr10	62201520	62202520	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 2 of 7)	intron (NM_197996, intron 2 of 7)	-7793.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180419038-2	chr1	180418538	180419538	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 5 of 7)	intron (NM_001081175, intron 5 of 7)	64466.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-36971474-1	chr10	36970974	36971974	+	597.5	f0_balb.idr	Intergenic	Intergenic	-3070.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122058161-2	chr5	122057661	122058661	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-8310.0	NM_001312908	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83728946-2	chr11	83728446	83729446	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17994.0	NM_183249	66107.0	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102698366-2	chr15	102697866	102698866	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23812.0	NM_026192	67488.0	Mm.71682	NM_026192	ENSMUSG00000023055	Calcoco1	1810009B06Rik|Cocoa|Gcap11|mKIAA1536	calcium binding and coiled coil domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136580412-2	chr1	136579912	136580912	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44489.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-56684434-1	chr13	56683934	56684934	+	597.5	f1_balb.idr	Intergenic	Intergenic	-18576.0	NM_008541	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	3.5	3.0	1.5	3.5	3.0	1.5
Merged-chr5-143551220-2	chr5	143550720	143551720	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133703, intron 1 of 1)	intron (NM_133703, intron 1 of 1)	2514.0	NM_026050	67238.0	Mm.383219	NM_026050	ENSMUSG00000083012	Fam220a	1500026F15Rik|2810453I06Rik|AW047776|Acpin1|Sipar	family with sequence similarity 220, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52593329-2	chr13	52592829	52593829	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198977, intron 1 of 13)	ORR1A3|LTR|ERVL-MaLR	-3553.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146730524-2	chr5	146730024	146731024	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64432.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0.0	4.0	3.5	1.5	2.5	6.0
Merged-chr10-20147465-2	chr10	20146965	20147965	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-1455.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	2.5	4.0	1.0	3.0	4.0	2.0
Merged-chr3-56281694-2	chr3	56281194	56282194	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16B|LTR|ERVL	-97993.0	NM_030595	26422.0	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-82285463-2	chr2	82284963	82285963	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	106739.0	NR_152125	228116.0	Mm.246588	NR_152125	ENSMUSG00000087061	A130030D18Rik	Gm558	RIKEN cDNA A130030D18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180519753-2	chr1	180519253	180520253	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36249.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180248619-2	chr1	180248119	180249119	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128605, intron 1 of 10)	intron (NM_001128605, intron 1 of 10)	-2669.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117781103-2	chr2	117780603	117781603	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31699.0	NR_126427	100504728.0	Mm.413174	NR_126427		Gm13985	-	predicted gene 13985	ncRNA	22.0	23.0	19.5	4.5	0.0	1.5
Merged-chr2-181597212-2	chr2	181596712	181597712	+	597.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172676, exon 3 of 5)	exon (NM_172676, exon 3 of 5)	1935.0	NM_172676	229011.0	Mm.205422	NM_172676	ENSMUSG00000038605	Samd10	D930033N23Rik|E130318E08	sterile alpha motif domain containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28820368-2	chr7	28819847	28820847	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177301, intron 9 of 12)	intron (NM_177301, intron 9 of 12)	-4991.0	NM_016772	51798.0	Mm.291776	NM_016772	ENSMUSG00000053898	Ech1	AA617331	enoyl coenzyme A hydratase 1, peroxisomal	protein-coding	1.5	6.5	1.0	1.0	0.5	0.5
Merged-chr3-105714356-2	chr3	105713833	105714833	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163356, intron 1 of 1)	intron (NM_001163356, intron 1 of 1)	8875.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	0.0	0.0	2.5	0.0	0.0	1.0
Merged-chr10-81400337-2	chr10	81399837	81400837	+	597.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008688, exon 10 of 10)	3' UTR (NM_008688, exon 10 of 10)	7273.0	NM_001099917	72273.0	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-70126916-2	chr2	70126379	70127379	+	597.5	f0_balb.idr|f1_c57bl6.idr	exon (NM_177376, exon 8 of 35)	exon (NM_177376, exon 8 of 35)	87753.0	NM_177376	329421.0	Mm.99648	NM_177376	ENSMUSG00000042064	Myo3b	A430065P19Rik	myosin IIIB	protein-coding	0.0	2.0	1.0	1.0	0.0	0.0
Merged-chr19-4255321-2	chr19	4254821	4255821	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	8557.0	NR_105951	102465595.0		NR_105951	ENSMUSG00000099290	Mir6985	Gm27719|mmu-mir-6985	microRNA 6985	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37428097-2	chr1	37427593	37428593	+	597.5	f0_balb.idr|f0_c57.idr	intron (NM_198006, intron 2 of 2)	intron (NM_198006, intron 2 of 2)	2010.0	NM_198006	76178.0	Mm.28085	NM_198006	ENSMUSG00000026112	Coa5	1700001A24Rik|6330578E17Rik|Pet191	cytochrome C oxidase assembly factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24530672-2	chr5	24530172	24531172	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3824.0	NM_015739	231044.0	Mm.246596	NM_015739	ENSMUSG00000067724	Gbx1	Gbx-1	gastrulation brain homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-45905854-2	chr1	45905354	45906354	+	597.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19740.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-10706099-3	chr18	10705611	10706611	+	597.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045379)	promoter-TSS (NR_045379)	585.0	NM_134130	106861.0	Mm.273108	NM_134130	ENSMUSG00000002475	Abhd3	AA675331|LABH3	abhydrolase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	3.0
Merged-chr11-76901792-3	chr11	76901296	76902296	+	597.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2749.0	NM_025655	66601.0	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	0.0	0.0	2.0	1.0	3.5	1.0
Merged-chr5-41554460-1	chr5	41553960	41554960	+	597.333313	f0_c57.idr	Intergenic	Lx7|LINE|L1	153231.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr8-56430342-3	chr8	56429853	56430853	+	597.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	54615.0	NR_131020	75123.0	Mm.72666	NR_131020	ENSMUSG00000110310	4930518J21Rik	-	RIKEN cDNA 4930518J21 gene	ncRNA	12.0	21.5	3.0	6.5	21.0	7.5
Merged-chr14-50904065-3	chr14	50903514	50904514	+	597.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10759.0	NM_001166651	546611.0	Mm.390692	NM_001166651	ENSMUSG00000090799	Klhl33	EG546611	kelch-like 33	protein-coding	18.0	15.5	8.0	2.5	0.0	6.0
Merged-chr11-31864045-2	chr11	31863545	31864545	+	597.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6895.0	NM_001290676	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	0.5	1.0	0.0	0.5	4.0	1.0
Merged-chr11-55136895-2	chr11	55136395	55137395	+	597.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172258, intron 6 of 10)	intron (NM_172258, intron 6 of 10)	14811.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-118525482-2	chr1	118524982	118525982	+	597.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359345, intron 23 of 38)	intron (NM_001359345, intron 23 of 38)	-66217.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10367009-2	chr17	10366509	10367509	+	597.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42407.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-31608886-2	chr10	31608389	31609389	+	597.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001146349, exon 1 of 6)	exon (NM_001146349, exon 1 of 6)	836.0	NM_001146349	268291.0	Mm.295212	NM_001146349	ENSMUSG00000063760	Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-161250068-2	chr1	161249550	161250550	+	597.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303408, intron 1 of 5)	intron (NM_001303408, intron 1 of 5)	1160.0	NM_007453	11758.0	Mm.186185	NM_007453	ENSMUSG00000026701	Prdx6	1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2	peroxiredoxin 6	protein-coding	8.5	3.0	3.5	0.5	2.0	0.0
Merged-chr5-53572722-3	chr5	53572210	53573210	+	597.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080928, intron 1 of 10)	L1MB7|LINE|L1	16931.0	NM_001080928	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-16214509-2	chr4	16214009	16215009	+	597.166687	f1_balb.idr|f1_c57bl6.idr	intron (NR_045765, intron 3 of 6)	MTE2b|LTR|ERVL-MaLR	50399.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	3.5	1.5	3.0	0.5	1.5	1.5
Merged-chr7-123292442-2	chr7	123291942	123292942	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122641, intron 16 of 18)	intron (NM_001122641, intron 16 of 18)	77473.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118699377-2	chr9	118698877	118699877	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 15 of 27)	intron (NM_133721, intron 15 of 27)	-12315.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	1.5	3.0	1.0	0.0	4.0	0.0
Merged-chr11-50179093-2	chr11	50178593	50179593	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026543, intron 2 of 6)	B1_Mus2|SINE|Alu	4242.0	NM_026543	68067.0	Mm.40828	NM_026543	ENSMUSG00000020381	Mrnip	2900016G09Rik|3010026O09Rik|AI851514|AW475975	MRN complex interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120889378-2	chr4	120888878	120889878	+	597.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_182929, exon 7 of 8)	exon (NM_182929, exon 7 of 8)	34579.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	0.0	0.0	0.5	1.5	0.0	0.5
Merged-chr12-111762085-2	chr12	111761585	111762585	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361610, intron 1 of 14)	intron (NM_001361610, intron 1 of 14)	3217.0	NM_001025361	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-23838889-2	chr14	23838389	23839389	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253364, intron 1 of 27)	intron (NM_001253364, intron 1 of 27)	165316.0	NM_001253375	16531.0	Mm.343607	NM_010610	ENSMUSG00000063142	Kcnma1	5730414M22Rik|BKCa|MaxiK|Slo|Slo1|mSlo|mSlo1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-26139119-1	chr11	26138619	26139619	+	597.0	f1_c57bl6.idr	intron (NR_027973, intron 1 of 5)	Lx5|LINE|L1	-63121.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	5.5	7.5	4.0	0.0	11.0	8.0
Merged-chr19-60574495-1	chr19	60573995	60574995	+	597.0	f1_c57bl6.idr	intron (NM_001172097, intron 1 of 6)	Lx5|LINE|L1	6528.0	NM_001172097	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	4.0	8.5	5.5	5.0	2.0	4.0
Merged-chr8-41276027-1	chr8	41275527	41276527	+	597.0	f0_balb.idr	exon (NM_023662, exon 12 of 38)	exon (NM_023662, exon 12 of 38)	36268.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	9.5	0.0	1.5	12.5	5.0	6.5
Merged-chr4-130828064-2	chr4	130827564	130828564	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	35527.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77762211-2	chr15	77761711	77762711	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 40 of 40)	intron (NM_022410, intron 40 of 40)	-5201.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90190333-2	chr16	90189835	90190835	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30407.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46921320-3	chr8	46920818	46921818	+	597.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65569.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31177882-2	chr14	31177382	31178382	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022656, intron 15 of 20)	intron (NM_022656, intron 15 of 20)	-9241.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95895469-2	chr15	95894969	95895969	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 3 of 19)	Lx3C|LINE|L1	-65397.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-9411228-2	chr14	9410728	9411728	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-472867.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0.5	13.5	1.0	6.0	11.0	2.0
Merged-chr2-25023340-2	chr2	25022840	25023840	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146251, intron 20 of 34)	L1MDa|LINE|L1	-31039.0	NM_001177654	56876.0	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107472888-2	chr11	107472388	107473388	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2168.0	NM_145823	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-5787170-1	chr10	5786670	5787670	+	597.0	f1_c57bl6.idr	Intergenic	Intergenic	18295.0	NM_025995	67141.0	Mm.197520	NM_025995	ENSMUSG00000019773	Fbxo5	2510044I10Rik|C85305|Emi1|Fbxo31	F-box protein 5	protein-coding	3.5	9.5	2.5	0.5	0.0	7.5
Merged-chr19-53305777-2	chr19	53305277	53306277	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4729.0	NM_001008542	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129544758-2	chr2	129544214	129545214	+	597.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-8112.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	16.0	8.5	18.5	11.0	8.0	31.0
Merged-chr10-69183742-2	chr10	69183242	69184242	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-24810.0	NM_001252636	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-38091200-1	chr5	38090700	38091700	+	597.0	f0_balb.idr	intron (NM_001359398, intron 1 of 9)	intron (NM_001359398, intron 1 of 9)	51970.0	NM_026959	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	0.0	0.0	8.0	7.0	4.0	0.0
Merged-chr1-152905673-2	chr1	152905173	152906173	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-3027.0	NM_001005507	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78237619-2	chr10	78237119	78238119	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081055, intron 1 of 22)	URR1A|DNA|hAT-Charlie	7023.0	NM_001081055	216131.0	Mm.27539	NM_001081055	ENSMUSG00000000374	Trappc10	B230307C21Rik|Gm870|Tmem1|b2b2416Clo|b2b2613Clo	trafficking protein particle complex 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-4425440-2	chr13	4424940	4425940	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-8903.0	NM_030611	83702.0	Mm.196666	NM_030611	ENSMUSG00000021210	Akr1c6	3alpha-HSD|Akr1c1|Hsd17b5	aldo-keto reductase family 1, member C6	protein-coding	0.0	0.0	3.0	1.5	0.0	2.0
Merged-chr7-66354649-1	chr7	66354149	66355149	+	597.0	f0_balb.idr	intron (NM_146191, intron 2 of 33)	(CAAAA)n|Simple_repeat|Simple_repeat	27075.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	4.0	24.5	5.0	4.5	15.0	17.0
Merged-chr7-46396809-2	chr7	46396309	46397309	+	597.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008421, exon 1 of 2)	5' UTR (NM_008421, exon 1 of 2)	341.0	NM_001112739	16502.0	Mm.249386	NM_008421	ENSMUSG00000058975	Kcnc1	C230009H10Rik|KShIIIB|KV4|Kcr2-1|Kv3.1|NGK2|Shaw	potassium voltage gated channel, Shaw-related subfamily, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149801352-1	chr4	149800852	149801852	+	597.0	f1_balb.idr	Intergenic	L1MC|LINE|L1	-27085.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	1.5	2.0	6.0	0.0	6.0	5.0
Merged-chr5-108446359-2	chr5	108445859	108446859	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172883, intron 1 of 9)	intron (NM_172883, intron 1 of 9)	2741.0	NM_001359977	243197.0	Mm.106818	NM_172883	ENSMUSG00000029490	Mfsd7a	4732482E20Rik|Mfsd7|Slc49a3	major facilitator superfamily domain containing 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124765229-2	chr2	124764729	124765729	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111648.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25266465-2	chr7	25265965	25266965	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1234.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6678018-2	chr11	6677518	6678518	+	597.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019511)	TTS (NM_019511)	-17782.0	NR_028586	100041311.0	Mm.388018	NR_028586	ENSMUSG00000086373	Gm11978	-	predicted gene 11978	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78201996-2	chr17	78201496	78202496	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 1 of 16)	intron (NM_015800, intron 1 of 16)	1748.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97121190-1	chr7	97120690	97121690	+	597.0	f1_balb.idr	intron (NM_001162477, intron 1 of 9)	L1Md_F2|LINE|L1	39439.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	6.5	9.0	18.0	8.5	38.0	14.0
Merged-chr17-5794536-2	chr17	5794036	5795036	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4121.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88149613-1	chr3	88149113	88150113	+	597.0	f0_balb.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	7241.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-44361051-1	chr3	44360551	44361551	+	597.0	f1_c57bl6.idr	Intergenic	L1Md_F|LINE|L1	1017209.0	NR_045172	72511.0	Mm.140700	NR_045172	ENSMUSG00000097040	2610316D01Rik	-	RIKEN cDNA 2610316D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180938935-2	chr1	180938435	180939435	+	597.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010094)	TTS (NM_010094)	-3583.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44416992-1	chr11	44416492	44417492	+	597.0	f1_c57bl6.idr	Intergenic	Intergenic	16929.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	84.5	229.5	132.0	33.0	87.5	99.0
Merged-chr1-80659994-1	chr1	80659494	80660494	+	597.0	f0_balb.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	5358.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57584151-1	chr10	57583651	57584651	+	597.0	f0_balb.idr	Intergenic	B3|SINE|B2	-47830.0	NM_008863	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-13741298-2	chr17	13740798	13741798	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022311, intron 1 of 2)	intron (NM_022311, intron 1 of 2)	-19243.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128425785-2	chr2	128425285	128426285	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	3566.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0.0	0.5	0.5	0.0	0.5	0.5
Merged-chr10-78378657-2	chr10	78378157	78379157	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-26957.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173361809-1	chr2	173361309	173362309	+	597.0	f0_balb.idr	Intergenic	Intergenic	-85276.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0.5	1.0	0.0	0.5	1.0	0.0
Merged-chr14-30623863-2	chr14	30623359	30624359	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	2349.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	2.0	0.0	9.0	5.0	3.5	2.5
Merged-chr2-30808684-2	chr2	30808177	30809177	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356433, intron 1 of 3)	intron (NM_001356433, intron 1 of 3)	494.0	NM_001356437	66617.0	Mm.33167	NM_170592	ENSMUSG00000026857	Ntmt1	2610205E22Rik|AL033331|AL033332|Mettl11a|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180519184-2	chr1	180518684	180519684	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-35680.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100132428-2	chr15	100131928	100132928	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 3 of 37)	intron (NM_001159361, intron 3 of 37)	-21968.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-70043007-1	chr13	70042507	70043507	+	597.0	f0_c57.idr	intron (NR_131156, intron 2 of 2)	intron (NR_131156, intron 2 of 2)	-14659.0	NR_045965	74280.0	Mm.273343	NR_045965	ENSMUSG00000099639	1700084F23Rik	1700003E18Rik|4930589D02Rik	RIKEN cDNA 1700084F23 gene	ncRNA	1.0	10.0	0.5	0.0	1.0	4.0
Merged-chr14-46872804-2	chr14	46872316	46873316	+	597.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-10149.0	NM_028966	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	17.0	11.5	32.5	14.5	17.0	1.0
Merged-chr1-129742901-2	chr1	129742401	129743401	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172485, intron 7 of 27)	L1_Mus2|LINE|L1	469597.0	NM_172485	210417.0	Mm.380518	NM_172485	ENSMUSG00000042581	Thsd7b	1700074E13Rik|B930082A18|D130067I03Rik	thrombospondin, type I, domain containing 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-51577061-2	chr8	51576561	51577561	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-779550.0	NR_151738	330767.0	Mm.246790	NR_151738	ENSMUSG00000110013	1190028D05Rik	-	RIKEN cDNA 1190028D05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135700582-2	chr7	135700082	135701082	+	597.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081117, exon 12 of 14)	exon (NM_001081117, exon 12 of 14)	15797.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101700579-2	chr11	101700079	101701079	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32377.0	NM_144831	217207.0	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-79388091-1	chr2	79387591	79388591	+	597.0	f1_balb.idr	intron (NM_001048176, intron 2 of 12)	intron (NM_001048176, intron 2 of 12)	40897.0	NM_001048176	228094.0	Mm.440704	NM_001033295	ENSMUSG00000075256	Cerkl	Gm1958|Rp26	ceramide kinase-like	protein-coding	0.0	1.0	0.5	0.0	0.0	2.5
Merged-chr16-8769799-2	chr16	8769299	8770299	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31457.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124040588-1	chr5	124040088	124041088	+	597.0	f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-8328.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	2.0	0.0	2.5	0.0	0.0	5.0
Merged-chr9-44681342-2	chr9	44680842	44681842	+	597.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001277847, exon 3 of 14)	exon (NM_001277847, exon 3 of 14)	8109.0	NM_001277847	58866.0	Mm.45380	NM_021481	ENSMUSG00000032098	Treh	2210412M19Rik	trehalase (brush-border membrane glycoprotein)	protein-coding	0.5	0.0	1.0	0.0	0.0	0.0
Merged-chr15-3958183-2	chr15	3957683	3958683	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21390.0	NM_134099	106052.0	Mm.234191	NM_134099	ENSMUSG00000022184	Fbxo4	1700096C12Rik|AI851261|AW494535|Fbx4	F-box protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-108462463-2	chr4	108461963	108462963	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175472, intron 2 of 30)	B1_Mur4|SINE|Alu	3037.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116684535-2	chr11	116684035	116685035	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009180, intron 4 of 8)	intron (NM_009180, intron 4 of 8)	9938.0	NR_028570	100216538.0		NR_028570	ENSMUSG00000065094	Snord1a	snR38	small nucleolar RNA, C/D box 1A	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100091313-2	chr12	100090813	100091813	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21018.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-124655704-1	chr10	124655204	124656204	+	597.0	f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	186630.0	NR_028310	75030.0	Mm.159403	NR_028310	ENSMUSG00000112364	4930503E24Rik	-	eukaryotic translation initiation factor 3, subunit I pseudogene	pseudo	1.5	6.5	3.0	0.0	1.5	0.0
Merged-chr8-107114319-2	chr8	107113819	107114819	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17774.0	NR_104410	21750.0	Mm.6402	NM_009353	ENSMUSG00000031921	Terf2	TRF2	telomeric repeat binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99976507-2	chr5	99976007	99977007	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077266, intron 1 of 7)	intron (NM_001077266, intron 1 of 7)	2431.0	NM_001077266	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10954604-2	chr16	10954104	10955104	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	38517.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70790457-1	chr8	70789957	70790957	+	597.0	f1_c57bl6.idr	intron (NM_199308, intron 1 of 25)	ID_B1|SINE|B4	1976.0	NM_199308	546071.0	Mm.250731	NM_199308	ENSMUSG00000031833	Mast3	BC024265|mKIAA0561	microtubule associated serine/threonine kinase 3	protein-coding	1.0	0.5	6.0	1.0	0.5	7.0
Merged-chr8-46596859-2	chr8	46596359	46597359	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001184, intron 6 of 14)	RLTR25A|LTR|ERVK	20368.0	NM_001001184	408022.0	Mm.217385	NM_001001184	ENSMUSG00000038225	Primpol	BC065112|Ccdc111	primase and polymerase (DNA-directed)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45167527-2	chr9	45167027	45168027	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-28239.0	NM_001198971	408059.0	Mm.249297	NM_001198971	ENSMUSG00000091996	BC049352	SMIM35	cDNA sequence BC049352	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139755111-1	chr5	139754611	139755611	+	597.0	f1_c57bl6.idr	intron (NM_026748, intron 39 of 46)	intron (NM_026748, intron 39 of 46)	12832.0	NR_106004	102465628.0		NR_106004	ENSMUSG00000098574	Mir7037	Gm27447|mmu-mir-7037	microRNA 7037	ncRNA	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr19-47222293-1	chr19	47221793	47222793	+	597.0	f1_c57bl6.idr	intron (NM_021360, intron 1 of 5)	intron (NM_021360, intron 1 of 5)	-6550.0	NM_001163480	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	1.5	2.0	1.0	0.0	0.0	0.0
Merged-chr10-81359548-2	chr10	81359048	81360048	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028657, intron 1 of 9)	intron (NM_028657, intron 1 of 9)	2057.0	NM_028657	73822.0	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1|gr	major facilitator superfamily domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100320354-2	chr12	100319854	100320854	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 19 of 19)	intron (NM_001033213, intron 19 of 19)	43745.0	NR_045741	100038713.0	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52021010-2	chr13	52020510	52021510	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75731.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-65205060-1	chr16	65204560	65205560	+	597.0	f0_balb.idr	Intergenic	Intergenic	-99276.0	NM_008310	15557.0	Mm.5040	NM_008310	ENSMUSG00000050783	Htr1f	Htr1eb	5-hydroxytryptamine (serotonin) receptor 1F	protein-coding	8.5	4.0	0.5	2.5	0.0	3.5
Merged-chr1-191307363-1	chr1	191306863	191307863	+	597.0	f1_balb.idr	intron (NM_025424, intron 3 of 3)	U1|snRNA|snRNA	10755.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	1.0	0.0	2.0	1.0	4.0	2.0
Merged-chr4-59832973-2	chr4	59832459	59833459	+	597.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	intron (NM_172468, intron 1 of 8)	27309.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	0.0	1.5	1.5	0.0	7.0	6.0
Merged-chr18-49523433-2	chr18	49522933	49523933	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033785, intron 1 of 1)	L1VL1|LINE|L1	144.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-51645211-1	chr16	51644711	51645711	+	597.0	f1_c57bl6.idr	Intergenic	Lx|LINE|L1	342076.0	NR_153657	629091.0	Mm.364775	NR_153657		Gm29686	-	predicted gene, 29686	ncRNA	1.0	0.5	2.5	0.5	0.0	7.0
Merged-chr19-3698865-2	chr19	3698365	3699365	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9428.0	NM_001358256	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-126498889-1	chr10	126498389	126499389	+	597.0	f0_balb.idr	Intergenic	Intergenic	211502.0	NR_105841	102465224.0		NR_105841	ENSMUSG00000098756	Mir378d	Gm27650|mmu-mir-378d	microRNA 378d	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22122420-2	chr16	22121920	22122920	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	40879.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134823246-1	chr6	134822746	134823746	+	597.0	f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-6953.0	NM_177687	232430.0	Mm.267010	NM_177687	ENSMUSG00000032652	Crebl2	AI046348|B230205M03	cAMP responsive element binding protein-like 2	protein-coding	2.0	7.0	1.0	0.0	1.5	0.0
Merged-chr4-120225515-2	chr4	120225065	120226065	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61696.0	NM_194060	329934.0	Mm.277090	NM_194060	ENSMUSG00000052135	Foxo6	-	forkhead box O6	protein-coding	1.5	2.0	1.5	1.0	0.0	3.0
Merged-chr14-65839325-2	chr14	65838825	65839825	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145944, intron 1 of 8)	ID_B1|SINE|B4	2023.0	NM_145944	67179.0	Mm.214576	NM_145944	ENSMUSG00000022035	Ccdc25	2610528H13Rik|NSrp70	coiled-coil domain containing 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-16165628-2	chr4	16165128	16166128	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045765, intron 1 of 6)	RLTR20A4|LTR|ERVK	1518.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	0.0	0.0	2.0	0.0	0.0	1.5
Merged-chr3-22310031-2	chr3	22309531	22310531	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	58661.0	NR_004439	19784.0		NR_004439		Rprl2	RPRH3|Rmrp3	ribonuclease P RNA-like 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-29003501-2	chr15	29003001	29004001	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	709903.0	NR_039542	100628607.0		NR_039542	ENSMUSG00000092639	Mir3964	mmu-mir-3964|mu-mir-3964	microRNA 3964	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58456555-1	chr13	58456055	58457055	+	597.0	f0_balb.idr	Intergenic	L1MA4|LINE|L1	-53212.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	2.0	6.0	2.0	3.5	3.5	2.0
Merged-chr15-99937881-2	chr15	99937381	99938381	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	-6223.0	NM_028180	72277.0	Mm.272766	NM_028180	ENSMUSG00000045350	1700030F18Rik	FAM186A	RIKEN cDNA 1700030F18 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100082174-2	chr15	100081674	100082674	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_037311, intron 3 of 3)	intron (NR_037311, intron 3 of 3)	43510.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	4.0	16.0	16.0	5.0	23.5	13.5
Merged-chr11-95586389-1	chr11	95585889	95586889	+	597.0	f1_balb.idr	intron (NM_033217, intron 1 of 5)	CpG	1309.0	NM_033217	18053.0	Mm.283893	NM_033217	ENSMUSG00000000120	Ngfr	LNGFR|Tnfrsf16|p75|p75NGFR|p75NTR	nerve growth factor receptor (TNFR superfamily, member 16)	protein-coding	0.0	0.0	1.0	0.0	0.5	2.0
Merged-chr10-8529404-2	chr10	8528904	8529904	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10579.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29719761-1	chr11	29719261	29720261	+	597.0	f1_c57bl6.idr	intron (NM_024226, intron 1 of 6)	intron (NM_024226, intron 1 of 6)	1198.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	37.0	78.5	77.5	32.5	55.5	40.5
Merged-chr2-181533362-2	chr2	181532862	181533862	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271584, intron 2 of 5)	MTE2a|LTR|ERVL-MaLR	12877.0	NM_001271584	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	3.0	0.0	3.0	0.5	0.0	4.0
Merged-chr16-11180987-2	chr16	11180487	11181487	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151506, intron 3 of 3)	RLTR20D|LTR|ERVK	2811.0	NR_151506	105246071.0	Mm.426799	NR_151506		4930509G22Rik	-	RIKEN cDNA 4930509G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30946811-2	chr16	30946311	30947311	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134621.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0.0	0.0	1.0	0.0	4.0	0.5
Merged-chr1-16220252-3	chr1	16219810	16220810	+	596.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114428.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24981038-2	chr2	24980538	24981538	+	596.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146251, intron 4 of 34)	intron (NM_146251, intron 4 of 34)	5005.0	NM_146251	241274.0	Mm.389243	NM_146251	ENSMUSG00000036833	Pnpla7	BC027342|E430013P11Rik|Nre	patatin-like phospholipase domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91269170-3	chr1	91268667	91269667	+	596.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355764, intron 5 of 10)	intron (NM_001355764, intron 5 of 10)	18601.0	NM_001355764	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	3.0	2.0	2.5	0.0	2.0	6.5
Merged-chr2-91499911-2	chr2	91499411	91500411	+	596.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 31 of 37)	intron (NM_172668, intron 31 of 37)	-26851.0	NM_001165989	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	4.5	2.0	7.0	1.0	0.0	1.0
Merged-chr4-155481982-2	chr4	155481489	155482489	+	596.833374	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-9372.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-37870395-2	chr16	37869895	37870895	+	596.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_177093, intron 1 of 3)	intron (NM_177093, intron 1 of 3)	1995.0	NM_177093	320184.0	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69379741-2	chr11	69379191	69380191	+	596.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10265.0	NM_146019	216848.0	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	0.0	2.0	4.0	0.0	2.0	4.0
Merged-chr1-192752860-3	chr1	192752350	192753350	+	596.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 2 of 11)	intron (NM_144881, intron 2 of 11)	18369.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	33.0	56.5	38.5	5.5	39.0	14.0
Merged-chr11-76897408-2	chr11	76896908	76897908	+	596.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7137.0	NM_025655	66601.0	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	1.5	1.0	0.0	0.5	5.5	2.5
Merged-chr15-95851132-1	chr15	95850632	95851632	+	596.666687	f0_c57.idr	intron (NM_001253813, intron 2 of 20)	MTB|LTR|ERVL-MaLR	-21060.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150854356-2	chr4	150853856	150854856	+	596.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133753)	promoter-TSS (NM_133753)	560.0	NM_001356323	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77306045-3	chr15	77305550	77306550	+	596.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053104, intron 1 of 13)	intron (NM_053104, intron 1 of 13)	1003.0	NM_001110827	93686.0	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	0.0	0.0	2.5	0.0	2.0	1.5
Merged-chr9-123479360-2	chr9	123478860	123479860	+	596.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_013860, exon 1 of 8)	exon (NM_013860, exon 1 of 8)	659.0	NM_013860	29806.0	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-60447304-2	chr1	60446804	60447804	+	596.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001198571, exon 6 of 11)	exon (NM_001198571, exon 6 of 11)	37685.0	NM_001198570	329165.0	Mm.212066	NM_198127	ENSMUSG00000026782	Abi2	8430425M24Rik|AI839867|C130078H13	abl-interactor 2	protein-coding	0.0	0.0	0.0	2.0	0.0	2.0
Merged-chr17-31857985-2	chr17	31857485	31858485	+	596.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2181.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	0.0	0.0	0.0	3.0	0.0	0.0
Merged-chr13-29983164-3	chr13	29982681	29983681	+	596.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010093, intron 1 of 6)	intron (NM_010093, intron 1 of 6)	1210.0	NM_001289920	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5497995-3	chr6	5497518	5498518	+	596.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1740.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6016489-2	chr17	6015989	6016989	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357667, intron 12 of 24)	intron (NM_001357667, intron 12 of 24)	8909.0	NM_001290698	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23980470-2	chr16	23979970	23980970	+	596.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001348026, exon 1 of 10)	5' UTR (NM_001348026, exon 1 of 10)	813.0	NM_001348026	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73226734-2	chr17	73226234	73227234	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081071, intron 5 of 5)	L2|LINE|L2	118749.0	NM_001177967	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13523178-2	chr9	13522697	13523697	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91836.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	0.0	2.0	1.0	2.0	0.5	1.5
Merged-chr14-79497710-2	chr14	79497210	79498210	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 1 of 8)	ID_B1|SINE|B4	-16442.0	NM_018765	22380.0	Mm.476813	NM_018765	ENSMUSG00000022023	Wbp4	AW545037|BB101031|FBP21	WW domain binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55482047-2	chr13	55481547	55482547	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177371, intron 5 of 14)	intron (NM_001177371, intron 5 of 14)	-4271.0	NR_105909	102465569.0		NR_105909	ENSMUSG00000098341	Mir6944	Gm27710|mmu-mir-6944	microRNA 6944	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84762323-2	chr18	84761823	84762823	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	18256.0	NR_155706	102641800.0		NR_155706		Gm38576	-	predicted gene, 38576	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-143141417-2	chr6	143140917	143141917	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153819, intron 5 of 8)	(TC)n|Simple_repeat|Simple_repeat	12514.0	NR_153819	102633311.0	Mm.333484	NR_153819		Gm31108	Gm31169	predicted gene, 31108	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6278224-2	chr2	6277724	6278724	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 3 of 6)	Lx5b|LINE|L1	-44533.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.0	3.0	0.5	4.0	0.0	0.0
Merged-chr16-31907156-2	chr16	31906654	31907654	+	596.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-26697.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171007280-2	chr1	171006780	171007780	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11646.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27733909-2	chr2	27733409	27734409	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	23326.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39416802-2	chr6	39416302	39417302	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018810, intron 1 of 7)	B1_Mus1|SINE|Alu	2974.0	NM_001311109	54484.0	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-79613598-2	chr13	79613098	79614098	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-1269786.0	NR_153410	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55797958-2	chr19	55797458	55798458	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	56148.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54939375-2	chr6	54938875	54939875	+	596.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172729, exon 5 of 12)	exon (NM_172729, exon 5 of 12)	32286.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156522586-2	chr2	156522086	156523086	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291122, intron 14 of 20)	intron (NM_001291122, intron 14 of 20)	-24990.0	NM_026661	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	15.0	18.5	17.5	8.0	11.5	4.5
Merged-chr14-59604227-2	chr14	59603727	59604727	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6268.0	NM_001168536	71891.0	Mm.439850	NM_027986	ENSMUSG00000021982	Cdadc1	2310010M10Rik|AI449174|AI463398|BB130816|NYD-SP15	cytidine and dCMP deaminase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-18236387-2	chr14	18235887	18236887	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011584, intron 1 of 7)	B1_Mus1|SINE|Alu	2719.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73590215-2	chr15	73589715	73590715	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357747, intron 2 of 7)	intron (NM_001357747, intron 2 of 7)	6311.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-89301439-2	chr11	89300939	89301939	+	596.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008711, exon 1 of 1)	exon (NM_008711, exon 1 of 1)	1120.0	NM_008711	18121.0	Mm.135266	NM_008711	ENSMUSG00000048616	Nog	-	noggin	protein-coding	0.0	0.5	2.0	3.5	0.0	0.0
Merged-chr6-43638411-2	chr6	43637911	43638911	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 2 of 8)	L1MD2|LINE|L1	27867.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50110742-1	chr17	50110242	50111242	+	596.5	f0_balb.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	79755.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.0	1.0	0.0	0.0	0.5	0.5
Merged-chr15-76670628-2	chr15	76670128	76671128	+	596.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007989)	promoter-TSS (NM_007989)	-680.0	NM_007989	14106.0	Mm.42011	NM_007989	ENSMUSG00000033837	Foxh1	Fast1|Fast2|fast-1|fast-2	forkhead box H1	protein-coding	2.5	0.0	0.5	0.0	0.0	1.5
Merged-chr14-12283764-2	chr14	12283264	12284264	+	596.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146051)	promoter-TSS (NM_146051)	-439.0	NM_001284384	218734.0	Mm.44068	NM_146051	ENSMUSG00000033111	3830406C13Rik	-	RIKEN cDNA 3830406C13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-57699115-2	chr15	57698615	57699615	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 1 of 3)	intron (NM_199449, intron 1 of 3)	4448.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67819329-2	chr5	67818829	67819829	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	28102.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0.0	0.0	1.5	0.0	1.5	0.5
Merged-chr12-113012609-2	chr12	113012109	113013109	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1899.0	NM_001291445	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37262280-2	chr10	37261780	37262780	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	-123354.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139334362-2	chr5	139333862	139334862	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-8898.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96614319-2	chr10	96613819	96614819	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-2682.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-131469801-2	chr3	131469301	131470301	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-94967.0	NM_001289479	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-43702880-2	chr16	43702380	43703380	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-38696.0	NM_001146325	100043314.0	Mm.390896	NM_001146325	ENSMUSG00000071552	Tigit	Vstm3	T cell immunoreceptor with Ig and ITIM domains	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34882403-2	chr6	34881903	34882903	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013366, intron 14 of 14)	intron (NM_001013366, intron 14 of 14)	-4338.0	NM_001135611	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118171225-2	chr7	118170725	118171725	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001031814, intron 31 of 62)	intron (NM_001031814, intron 31 of 62)	-41600.0	NM_019419	54208.0	Mm.29924	NM_019419	ENSMUSG00000030654	Arl6ip1	AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5442291-2	chr17	5441791	5442791	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS6|LTR|ERV1	-2031.0	NM_027457	70544.0	Mm.46654	NM_027457	ENSMUSG00000004945	Tmem242	1110008A10Rik|2310046K16Rik|5730437N04Rik	transmembrane protein 242	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69033167-2	chr11	69032667	69033667	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281465, intron 15 of 22)	intron (NM_001281465, intron 15 of 22)	-12470.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-9085588-2	chr5	9085088	9086088	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15149.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-125117277-2	chr4	125116777	125117777	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10604.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-39946220-2	chr9	39945720	39946720	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	3958.0	NM_147107	259111.0	Mm.223481	NM_147107	ENSMUSG00000051493	Olfr974	MOR171-1	olfactory receptor 974	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117930940-2	chr11	117930440	117931440	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	38426.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167270499-2	chr2	167269999	167270999	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29962.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127355975-3	chr7	127355468	127356468	+	596.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	-10654.0	NM_146202	233890.0	Mm.23031	NM_146202	ENSMUSG00000047371	Zfp768	BC026432|Znf768	zinc finger protein 768	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49907039-2	chr16	49906539	49907539	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 9 of 9)	intron (NM_010581, intron 9 of 9)	-48791.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31568814-2	chr14	31568314	31569314	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009937, intron 1 of 16)	intron (NM_009937, intron 1 of 16)	8569.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45116863-2	chr9	45116365	45117365	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033547, intron 1 of 2)	intron (NR_033547, intron 1 of 2)	-1011.0	NM_001014761	72821.0	Mm.229373	NM_001014761	ENSMUSG00000070304	Scn2b	2810451E09Rik|AI840361|Gm183	sodium channel, voltage-gated, type II, beta	protein-coding	5.5	1.5	9.0	0.0	0.5	9.0
Merged-chr13-55213508-2	chr13	55213008	55214008	+	596.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008739, exon 2 of 23)	exon (NM_008739, exon 2 of 23)	3726.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-104069923-2	chr2	104069444	104070444	+	596.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-1066.0	NM_181858	333883.0	Mm.359026	NM_181858	ENSMUSG00000068686	Cd59b	-	CD59b antigen	protein-coding	4.0	6.5	3.0	5.5	4.0	1.0
Merged-chr3-94612925-2	chr3	94612425	94613425	+	596.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011656, exon 13 of 13)	3' UTR (NM_011656, exon 13 of 13)	-30209.0	NM_029721	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	3.0	6.0	6.5	2.0	5.0	2.5
Merged-chr12-32828505-1	chr12	32828005	32829005	+	596.5	f0_balb.idr	intron (NM_021524, intron 1 of 10)	intron (NM_021524, intron 1 of 10)	4389.0	NR_045032	100504486.0	Mm.440246	NR_045032		Gdap10	Gdap-ps	ganglioside-induced differentiation-associated-protein 10	ncRNA	7.5	13.0	12.0	24.0	32.0	27.5
Merged-chr7-75684738-1	chr7	75684238	75685238	+	596.5	f0_balb.idr	intron (NM_029332, intron 12 of 36)	intron (NM_029332, intron 12 of 36)	-163600.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	2.0	7.0	2.5	0.0	1.5	6.0
Merged-chr6-37300262-2	chr6	37299762	37300762	+	596.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081206)	promoter-TSS (NM_001081206)	-286.0	NM_001347104	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120925041-2	chr6	120924541	120925541	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-8217.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103381365-2	chr15	103380865	103381865	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14574.0	NM_001314041	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126781481-2	chr7	126780981	126781981	+	596.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011538)	promoter-TSS (NM_011538)	-2.0	NM_011538	21389.0	Mm.727	NM_011538	ENSMUSG00000030699	Tbx6	rv	T-box 6	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr16-21717556-2	chr16	21717056	21718056	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22891.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-73228046-2	chr6	73227546	73228546	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6415.0	NM_001164669	330355.0	Mm.333166	NM_001164669	ENSMUSG00000052861	Dnah6	9830168K20|A730004I20Rik|Dnahc6|mKIAA1697|mdhc6	dynein, axonemal, heavy chain 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44308598-2	chr7	44308098	44309098	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1639.0	NM_009131	20256.0	Mm.20428	NM_009131	ENSMUSG00000004473	Clec11a	AW457320|Clecsf3|Scgf	C-type lectin domain family 11, member a	protein-coding	2.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165855112-2	chr2	165854612	165855612	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	3061.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	1.5	4.5	8.0	1.0	17.0	2.5
Merged-chr2-144265398-2	chr2	144264898	144265898	+	596.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_030762)	TTS (NR_030762)	804.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34317144-2	chr10	34316644	34317644	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176968, intron 8 of 11)	intron (NM_176968, intron 8 of 11)	19723.0	NM_030203	72480.0	Mm.21485	NM_030203	ENSMUSG00000039485	Tspyl4	2610102M01Rik|B230210I21Rik|D10Bwg0791e	TSPY-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5639258-2	chr19	5638758	5639758	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009045, intron 4 of 10)	intron (NM_009045, intron 4 of 10)	1768.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	0.0	5.0	0.0	1.5	7.0	1.0
Merged-chr10-56880851-2	chr10	56880351	56881351	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	448870.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141560532-2	chr4	141560032	141561032	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	14370.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	16.5	38.5	31.0	32.0	42.0	25.0
Merged-chr14-46724146-2	chr14	46723645	46724645	+	596.450012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36396.0	NM_001360041	72391.0	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding	3.0	2.0	0.0	0.0	1.0	1.5
Merged-chr1-152292521-3	chr1	152292008	152293008	+	596.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94174.0	NM_025677	66637.0	Mm.379120	NM_025677	ENSMUSG00000014980	Tsen15	5730449L18Rik|AL023077|Sen15	tRNA splicing endonuclease subunit 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69334115-2	chr11	69333613	69334613	+	596.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-6656.0	NR_027827	80515.0	Mm.5324	NM_020591	ENSMUSG00000043419	Chd3os	2310043C11Rik|A030009H04Rik|AA589459|AB041807|MNCb-2875|RNF21	chromodomain helicase DNA binding protein 3, opposite strand	ncRNA	0.5	1.0	3.0	0.5	0.0	2.0
Merged-chr8-117524720-2	chr8	117524220	117525220	+	596.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 2 of 32)	intron (NM_172285, intron 2 of 32)	26445.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137087593-2	chr5	137087093	137088093	+	596.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15321.0	NM_008871	18787.0	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr4-139170462-2	chr4	139169954	139170954	+	596.333374	f0_balb.idr|f1_balb.idr	Intergenic	LTR79|LTR|ERVL	10201.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	63.5	118.0	96.5	104.5	267.0	263.0
Merged-chr18-80043384-2	chr18	80042884	80043884	+	596.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-3511.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	0.5	3.0	4.5	2.5	9.0	4.0
Merged-chr10-91207568-3	chr10	91207099	91208099	+	596.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_151510)	TTS (NR_151510)	13020.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-24080155-2	chr11	24079655	24080655	+	596.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159290)	promoter-TSS (NM_001159290)	-540.0	NM_001159290	14025.0	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8914279-2	chr4	8913796	8914796	+	596.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	162972.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	8.5	2.0	0.0	16.0	2.0
Merged-chr4-24898866-2	chr4	24898334	24899334	+	596.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_026742, intron 2 of 2)	intron (NM_026742, intron 2 of 2)	751.0	NM_026742	68493.0	Mm.204831	NM_026742	ENSMUSG00000028261	Ndufaf4	1110007M04Rik|3000003G13Rik|AW214064	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	protein-coding	4.5	1.0	3.0	0.5	1.0	1.5
Merged-chr18-12190357-2	chr18	12189857	12190857	+	596.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029623)	TTS (NM_029623)	21627.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	0.0	1.0	0.0	3.5	0.0	3.0
Merged-chr14-36863686-2	chr14	36863186	36864186	+	596.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55849.0	NM_001347503	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-108814979-2	chr7	108814479	108815479	+	596.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11018.0	NM_146726	258721.0	Mm.377655	NM_146726	ENSMUSG00000066241	Olfr514	MOR268-1	olfactory receptor 514	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3394094-2	chr12	3393594	3394594	+	596.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_008445, intron 5 of 7)	PB1|SINE|Alu	28962.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-41410287-2	chr3	41409787	41410787	+	596.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82912.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-77265997-3	chr2	77265508	77266508	+	596.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175465, intron 1 of 17)	intron (NM_175465, intron 1 of 17)	14584.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-40894104-1	chr8	40893604	40894604	+	596.0	f0_c57.idr	intron (NM_007514, intron 1 of 11)	intron (NM_007514, intron 1 of 11)	31737.0	NM_001044740	11988.0	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.0	8.0	0.0	0.0	1.0	0.0
Merged-chr17-59740402-2	chr17	59739902	59740902	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-727080.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-17342493-2	chr19	17341994	17342994	+	596.0	f0_balb.idr|f0_c57.idr	intron (NM_010265, intron 1 of 2)	MIRb|SINE|MIR	-2989.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	8.0	9.0	24.5	11.5	10.0	5.5
Merged-chr10-17223442-2	chr10	17222942	17223942	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127660.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45049581-2	chr19	45049081	45050081	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362379, intron 2 of 10)	intron (NM_001362379, intron 2 of 10)	2005.0	NM_001362381	94280.0	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19621920-2	chr10	19621420	19622420	+	596.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178258)	promoter-TSS (NM_178258)	-108.0	NM_178258	237310.0	Mm.331979	NM_178258	ENSMUSG00000039760	Il22ra2	CRF2-10|CRF2-s1|CRF2X|Il-22bp	interleukin 22 receptor, alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-65187669-2	chr1	65187169	65188169	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310624, intron 1 of 41)	intron (NM_001310624, intron 1 of 41)	984.0	NM_011086	18711.0	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE type zinc finger containing	protein-coding	12.5	45.0	18.0	14.0	46.0	18.0
Merged-chr11-13722040-1	chr11	13721540	13722540	+	596.0	f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	457001.0	NR_131011	75280.0	Mm.108492	NR_131011	ENSMUSG00000085452	4930554G24Rik	-	RIKEN cDNA 4930554G24 gene	ncRNA	0.0	0.0	1.5	0.0	2.0	1.0
Merged-chr15-76718655-1	chr15	76718155	76719155	+	596.0	f1_c57bl6.idr	exon (NM_198119, exon 3 of 6)	exon (NM_198119, exon 3 of 6)	3518.0	NM_198119	378937.0	Mm.289666	NM_198119	ENSMUSG00000033707	Lrrc24	6430402H13Rik	leucine rich repeat containing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19217641-2	chr3	19217141	19218141	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356295, intron 6 of 7)	B1_Mus2|SINE|Alu	29346.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-49475642-1	chr17	49475142	49476142	+	596.0	f1_c57bl6.idr	intron (NM_001008231, intron 15 of 25)	intron (NM_001008231, intron 15 of 25)	47278.0	NM_020042	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	0.5	2.0	0.0	0.0	1.0	0.5
Merged-chr17-66325919-2	chr17	66325419	66326419	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	123831.0	NM_172963	68617.0	Mm.33421	NM_172963	ENSMUSG00000052105	Mtcl1	1110012J17Rik|Ccdc165|D130071O13|Kiaa0802|Soga2|mKIAA0802|t8219b25	microtubule crosslinking factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45333177-1	chr19	45332677	45333677	+	596.0	f0_balb.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-30557.0	NM_001360122	12234.0	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	10.0	20.0	3.0	15.0	4.5	9.5
Merged-chr16-78934230-2	chr16	78933730	78934730	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139134, intron 1 of 5)	intron (NM_139134, intron 1 of 5)	3282.0	NM_139134	246048.0	Mm.77895	NM_139134	ENSMUSG00000022860	Chodl	3110074E07Rik|MT75|PRED12	chondrolectin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123248125-1	chr8	123247625	123248625	+	596.0	f1_balb.idr	intron (NM_028200, intron 7 of 14)	intron (NM_028200, intron 7 of 14)	-6070.0	NM_020497	57247.0	Mm.379084	NM_020497	ENSMUSG00000001065	Zfp276	AW048709|D8Ertd370e|D8Ertd377e|Znf276	zinc finger protein (C2H2 type) 276	protein-coding	14.0	20.5	23.0	17.5	36.5	25.0
Merged-chr6-124760228-2	chr6	124759728	124760728	+	596.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001302642, exon 10 of 10)	3' UTR (NM_001302642, exon 10 of 10)	-3741.0	NM_007881	13498.0	Mm.333380	NM_007881	ENSMUSG00000004263	Atn1	Atr1|Drpla|atrophin-1	atrophin 1	protein-coding	2.0	0.0	0.0	2.0	0.0	0.0
Merged-chr10-94568757-2	chr10	94568257	94569257	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359760, intron 1 of 3)	intron (NM_001359760, intron 1 of 3)	-6500.0	NM_001168684	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145865321-1	chr2	145864821	145865821	+	596.0	f1_c57bl6.idr	intron (NM_028724, intron 9 of 12)	intron (NM_028724, intron 9 of 12)	-37920.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	5.5	16.0	11.5	5.0	6.0	11.0
Merged-chr11-79120830-2	chr11	79120330	79121330	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	25643.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24461798-1	chr17	24461298	24462298	+	596.0	f1_balb.idr	Intergenic	B3|SINE|B2	-6406.0	NR_125990	13560.0	Mm.163132	NM_007893	ENSMUSG00000024137	E4f1	p120E4F|phi-AP3	E4F transcription factor 1	protein-coding	1.5	0.0	0.0	0.0	5.0	0.0
Merged-chr5-135616791-2	chr5	135616291	135617291	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15863.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	1.0	0.0	0.5	0.0	0.0	2.0
Merged-chr1-36564341-2	chr1	36563841	36564841	+	596.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027957, exon 5 of 6)	exon (NM_027957, exon 5 of 6)	-5960.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-47346074-2	chr4	47345574	47346574	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-7148.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31383171-2	chr2	31382671	31383671	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87099.0	NM_007494	11898.0	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97166356-2	chr15	97165856	97166856	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155278, intron 2 of 3)	intron (NR_155278, intron 2 of 3)	888.0	NR_155278	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129393742-1	chr2	129393242	129394242	+	596.0	f0_c57.idr	Intergenic	Intergenic	-22603.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	1.0	6.5	6.0	10.5	5.0	10.5
Merged-chr18-75359802-2	chr18	75359302	75360302	+	596.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_155535, exon 7 of 7)	non-coding (NR_155535, exon 7 of 7)	7286.0	NR_155535	102636262.0	Mm.421168	NR_155535		Gm20544	-	predicted gene 20544	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-17960198-2	chr18	17959698	17960698	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-379208.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-137826818-1	chr6	137826318	137827318	+	596.0	f0_balb.idr	intron (NM_172733, intron 6 of 8)	intron (NM_172733, intron 6 of 8)	72241.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133150161-2	chr4	133149661	133150661	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	19528.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	23.5	22.0	20.5	10.5	59.5	20.0
Merged-chr10-81157242-2	chr10	81156742	81157742	+	596.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_021501, exon 6 of 11)	exon (NM_021501, exon 6 of 11)	10478.0	NM_021501	59004.0	Mm.34428	NM_021501	ENSMUSG00000004934	Pias4	PIASY|Pias-gamma|Piasg	protein inhibitor of activated STAT 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63149435-2	chr9	63148935	63149935	+	596.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163758)	promoter-TSS (NM_001163758)	-474.0	NM_001163758	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46705413-2	chr8	46704913	46705913	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	34102.0	NR_045750	100503498.0	Mm.187358	NR_045750	ENSMUSG00000097534	Gm16675	-	predicted gene, 16675	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-111522571-2	chr2	111522071	111523071	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	15716.0	NM_146885	258887.0	Mm.223297	NM_146885	ENSMUSG00000109547	Olfr1294	MOR248-7	olfactory receptor 1294	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4675252-2	chr8	4674752	4675752	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62082.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134226005-2	chr5	134225505	134226505	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010876, intron 5 of 10)	B2_Mm1a|SINE|B2	3620.0	NM_001286037	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98337288-2	chr7	98336788	98337788	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-16080.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120201672-2	chr11	120201172	120202172	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-11816.0	NR_030682	100042332.0	Mm.269766	NR_030682		2810410L24Rik	-	RIKEN cDNA 2810410L24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86727142-2	chr12	86726642	86727642	+	596.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144524)	promoter-TSS (NM_144524)	-682.0	NM_144524	68737.0	Mm.63979	NM_144524	ENSMUSG00000021257	Angel1	1110030H02Rik|mKIAA0759	angel homolog 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-14477303-2	chr16	14476813	14477813	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85004.0	NR_033556	545280.0	Mm.123679	NR_033556		A630010A05Rik	-	RIKEN cDNA A630010A05 gene	ncRNA	8.5	8.0	10.0	3.5	10.0	1.5
Merged-chr5-92688299-2	chr5	92687799	92688799	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015756, intron 1 of 10)	intron (NM_015756, intron 1 of 10)	4864.0	NM_015756	27428.0	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129336476-1	chr4	129335976	129336976	+	596.0	f1_c57bl6.idr	intron (NM_025970, intron 1 of 6)	intron (NM_025970, intron 1 of 6)	450.0	NM_025970	67106.0	Mm.36575	NM_025970	ENSMUSG00000057572	Zbtb8os	2010001H09Rik|2310028N13Rik|AI851226|Arch|Archm	zinc finger and BTB domain containing 8 opposite strand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100588915-2	chr13	100588415	100589415	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	28029.0	NM_178410	218518.0	Mm.25300	NM_178410	ENSMUSG00000021636	Marveld2	BC003296|MARVD2|Mrvldc2|Tric|Trica|Tricb|Tricc	MARVEL (membrane-associating) domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118680882-1	chr9	118680382	118681382	+	596.0	f1_balb.idr	intron (NM_133721, intron 11 of 27)	intron (NM_133721, intron 11 of 27)	-30810.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	7.0	5.0	11.5	3.5	4.0	9.5
Merged-chr17-7466797-1	chr17	7466297	7467297	+	596.0	f1_c57bl6.idr	Intergenic	Intergenic	-81492.0	NM_001142539	667055.0	Mm.327371	NM_001142539	ENSMUSG00000056133	Gm9992	-	predicted gene 9992	protein-coding	0.0	0.0	0.0	0.0	7.5	0.0
Merged-chr3-116211842-1	chr3	116211342	116212342	+	596.0	f0_balb.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	41642.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-5333137-1	chr5	5332637	5333637	+	596.0	f0_balb.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	47114.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	16.5	11.0	5.5	4.5	10.5	4.5
Merged-chr6-38864697-2	chr6	38864197	38865197	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 1 of 14)	intron (NM_010433, intron 1 of 14)	11493.0	NM_010433	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88401829-2	chr3	88401329	88402329	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025928, intron 1 of 4)	ORR1D1|LTR|ERVL-MaLR	8568.0	NM_001310605	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	4.0	0.0	1.5	0.0	3.0	1.5
Merged-chr1-107566627-1	chr1	107566127	107567127	+	596.0	f0_balb.idr	Intergenic	Intergenic	-23379.0	NM_011459	20725.0	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85004342-2	chr11	85003842	85004842	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029934, intron 29 of 33)	ID_B1|SINE|B4	46588.0	NM_007607	12351.0	Mm.1641	NM_007607	ENSMUSG00000000805	Car4	AW456718|Ca4	carbonic anhydrase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51814879-2	chr11	51814379	51815379	+	596.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_199299, exon 12 of 12)	3' UTR (NM_199299, exon 12 of 12)	42602.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-30950980-1	chr17	30950480	30951480	+	596.0	f1_c57bl6.idr	Intergenic	RLTR18-int|LTR|ERVK	-3703.0	NM_177465	52020.0	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	1.0	4.0	2.0	6.5	1.0	1.0
Merged-chr4-105477546-1	chr4	105477046	105478046	+	596.0	f1_c57bl6.idr	Intergenic	Intergenic	320199.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	6.0	11.0	11.5	20.0	19.5	15.0
Merged-chr17-26493513-1	chr17	26493013	26494013	+	596.0	f1_balb.idr	Intergenic	Lx5|LINE|L1	14959.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.0	1.0	2.0	1.0	3.0	2.0
Merged-chr16-36067604-1	chr16	36067104	36068104	+	596.0	f0_balb.idr	intron (NM_027342, intron 1 of 4)	B3A|SINE|B2	3911.0	NM_027342	70186.0	Mm.212991	NM_027342	ENSMUSG00000003955	Fam162a	2310056P07Rik|HGTD-P	family with sequence similarity 162, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-137861569-2	chr3	137861069	137862069	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-2918.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31797091-1	chr17	31796591	31797591	+	596.0	f1_balb.idr	Intergenic	Intergenic	58713.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	0.0	9.0	0.0	0.0	0.0	0.5
Merged-chr16-10522397-2	chr16	10521897	10522897	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007575, intron 15 of 18)	intron (NM_007575, intron 15 of 18)	20657.0	NM_021428	58239.0	Mm.353006	NM_021428	ENSMUSG00000038055	Dexi	1810029J14Rik|AI836170|AW413143|D16Bwg0586e|Myle	dexamethasone-induced transcript	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131278747-2	chr1	131278247	131279247	+	596.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019777, exon 2 of 22)	5' UTR (NM_019777, exon 2 of 22)	816.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-21959775-2	chr3	21959275	21960275	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-116877.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65799384-2	chr18	65798884	65799884	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVL-E-int|LTR|ERVL	-1194.0	NM_025468	66286.0	Mm.27800	NM_025468	ENSMUSG00000024516	Sec11c	1810029G24Rik|Sec11l3	SEC11 homolog C, signal peptidase complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136556340-1	chr6	136555840	136556840	+	596.0	f1_balb.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	37489.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	1.0	7.0	2.0	9.0	8.0	9.0
Merged-chr8-83899360-1	chr8	83898860	83899860	+	596.0	f1_balb.idr	promoter-TSS (NM_181039)	promoter-TSS (NM_181039)	-738.0	NM_181039	330814.0	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	11.0	4.0	1.0	0.0	1.5	0.0
Merged-chr3-28171973-2	chr3	28171473	28172473	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91241.0	NM_001163007	665113.0	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71882684-2	chr2	71882201	71883201	+	596.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_001360002, intron 3 of 10)	T-rich|Low_complexity|Low_complexity	7797.0	NM_001360002	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	16.0	29.0	26.5	19.5	7.0	7.5
Merged-chr7-19627342-2	chr7	19626842	19627842	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009046, intron 2 of 10)	RMER17C|LTR|ERVK	2096.0	NM_001290457	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133213858-1	chr4	133213358	133214358	+	596.0	f1_c57bl6.idr	Intergenic	Intergenic	-1322.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	0.0	2.5	3.0	0.0	2.0	6.0
Merged-chr8-64618850-3	chr8	64618339	64619339	+	596.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013494, intron 2 of 8)	intron (NM_013494, intron 2 of 8)	74270.0	NM_013494	12876.0	Mm.31395	NM_013494	ENSMUSG00000037852	Cpe	CPH|Cph-1|Cph1|NF-alpha1|R74677|fat	carboxypeptidase E	protein-coding	4.5	0.0	0.0	0.5	0.0	0.0
Merged-chr8-24399528-2	chr8	24399028	24400028	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39418.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-80950467-1	chr8	80949967	80950967	+	596.0	f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	64439.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	49.5	70.5	52.5	47.0	127.5	106.5
Merged-chr5-16467879-2	chr5	16467390	16468390	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85605.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146775241-1	chr6	146774741	146775741	+	596.0	f1_c57bl6.idr	intron (NM_172734, intron 12 of 13)	intron (NM_172734, intron 12 of 13)	-30289.0	NM_001289680	272322.0	Mm.333500	NM_172309	ENSMUSG00000040187	Arntl2	4632430A05Rik|BMAL2|CLIF|MOP9|bHLHe6	aryl hydrocarbon receptor nuclear translocator-like 2	protein-coding	0.0	7.5	5.0	0.0	5.0	0.0
Merged-chr6-114076950-2	chr6	114076450	114077450	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34870.0	NM_009723	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-13874501-2	chr6	13874001	13875001	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045995, intron 1 of 2)	intron (NR_045995, intron 1 of 2)	2932.0	NR_045995	76311.0	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125557559-1	chr7	125557059	125558059	+	596.0	f1_c57bl6.idr	intron (NM_001008700, intron 1 of 10)	intron (NM_001008700, intron 1 of 10)	5277.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	3.5	9.5	9.5	5.5	14.0	5.0
Merged-chr2-122301322-2	chr2	122300822	122301822	+	596.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_025777, exon 4 of 6)	exon (NM_025777, exon 4 of 6)	2422.0	NM_025777	66811.0	Mm.171333	NM_025777	ENSMUSG00000027225	Duoxa2	9030623N16Rik|Nip2	dual oxidase maturation factor 2	protein-coding	0.0	5.5	0.0	3.5	0.0	0.0
Merged-chr8-85503216-2	chr8	85502716	85503716	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173866, intron 2 of 11)	intron (NM_173866, intron 2 of 11)	10599.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9782603-1	chr3	9782103	9783103	+	596.0	f0_balb.idr	intron (NM_053182, intron 1 of 7)	intron (NM_053182, intron 1 of 7)	51076.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.0	4.0	0.5	0.0	0.0	1.0
Merged-chr15-57972310-2	chr15	57971810	57972810	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13593.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105410751-2	chr8	105410251	105411251	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301173, intron 1 of 15)	MTEa|LTR|ERVL-MaLR	2751.0	NM_177791	279499.0	Mm.67628	NM_177791	ENSMUSG00000051648	Kctd19	4922504H04Rik	potassium channel tetramerisation domain containing 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100329286-2	chr11	100328786	100329786	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5121.0	NM_010257	14459.0	Mm.4767	NM_010257	ENSMUSG00000017165	Gast	GAS	gastrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45447201-1	chr4	45446701	45447701	+	596.0	f1_balb.idr	intron (NM_001033306, intron 4 of 5)	intron (NM_001033306, intron 4 of 5)	-38435.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	0.0	8.5	4.0	0.0	4.5	1.5
Merged-chr5-33432420-2	chr5	33431920	33432920	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011320, intron 1 of 1)	CpG	1670.0	NM_011320	672284.0		NM_011320	ENSMUSG00000029112	Nkx1-1	Nkx-1.1|Sax2	NK1 homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105698389-1	chr5	105697889	105698889	+	596.0	f1_balb.idr	Intergenic	ID_B1|SINE|B4	-1580.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	10.0	38.5	15.0	10.5	45.5	41.0
Merged-chr18-10608885-1	chr18	10608385	10609385	+	596.0	f1_c57bl6.idr	intron (NM_001081222, intron 1 of 10)	RSINE1|SINE|B4	1467.0	NM_001081222	77805.0	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	9.0	35.5	21.5	9.5	24.0	13.0
Merged-chr1-194878651-2	chr1	194878151	194879151	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56650.0	NR_039539	100628615.0		NR_039539	ENSMUSG00000092633	Mir3962	mmu-mir-3962|mu-mir-3962	microRNA 3962	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129634464-1	chr2	129633964	129634964	+	596.0	f1_c57bl6.idr	Intergenic	Intergenic	39002.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	5.5	11.5	9.0	8.5	10.0	1.5
Merged-chr1-64727071-2	chr1	64726571	64727571	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10679.0	NM_001042659	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95875312-1	chr13	95874812	95875812	+	596.0	f1_balb.idr	intron (NM_027711, intron 1 of 35)	L1MB3|LINE|L1	16610.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	6.5	21.0	19.0	5.0	7.5	4.5
Merged-chr9-78490652-2	chr9	78490152	78491152	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-8928.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98742107-2	chr12	98741607	98742607	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4702.0	NM_001146199	24000.0	Mm.4420	NM_011877	ENSMUSG00000021009	Ptpn21	PTPD1|PTPRL10	protein tyrosine phosphatase, non-receptor type 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-92162659-2	chr10	92162153	92163153	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028262, intron 2 of 12)	intron (NR_028262, intron 2 of 12)	2525.0	NR_028262	110333.0	Mm.429764	NR_028262	ENSMUSG00000112117	Rmst	100041799|AI853140|C230053E11Rik|D930049J19Rik|Dmt2|Gm3515|M2|Ncrms	rhabdomyosarcoma 2 associated transcript (non-coding RNA)	ncRNA	2.5	7.5	1.5	2.5	6.0	1.5
Merged-chr6-82754849-2	chr6	82754349	82755349	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 2 of 17)	RSINE1|SINE|B4	19605.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	2.5	3.5	2.5	0.0	4.5	0.0
Merged-chr17-17898518-1	chr17	17898018	17899018	+	596.0	f1_balb.idr	Intergenic	B3|SINE|B2	10694.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	7.5	1.5	1.5	6.5	2.0	1.5
Merged-chr2-172347831-2	chr2	172347331	172348331	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025912, intron 1 of 2)	MIR|SINE|MIR	2254.0	NM_025912	67017.0	Mm.30013	NM_025912	ENSMUSG00000027495	Fam210b	2010011I20Rik|AI430961|AV108736	family with sequence similarity 210, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125413521-1	chr8	125413021	125414021	+	596.0	f1_balb.idr	Intergenic	L1MB2|LINE|L1	79312.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	6.0	2.5	1.0	4.0	7.0	6.5
Merged-chr3-116414662-1	chr3	116414162	116415162	+	596.0	f0_c57.idr	intron (NM_001173553, intron 2 of 13)	intron (NM_001173553, intron 2 of 13)	9370.0	NM_001080818	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120358847-1	chr6	120358347	120359347	+	596.0	f0_balb.idr	intron (NR_045558, intron 1 of 9)	intron (NR_045558, intron 1 of 9)	-1378.0	NM_026028	67200.0	Mm.45767	NM_026028	ENSMUSG00000030177	Ccdc77	2400002C23Rik|2700091N06Rik|AV168274	coiled-coil domain containing 77	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-26647329-1	chr14	26646829	26647829	+	596.0	f1_c57bl6.idr	intron (NM_007479, intron 3 of 5)	PB1D9|SINE|Alu	9195.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0.0	0.0	1.0	2.0	10.5	4.0
Merged-chr11-98866869-2	chr11	98866369	98867369	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_197940, intron 1 of 7)	B1_Mus1|SINE|Alu	3271.0	NM_197940	68524.0	Mm.28661	NM_197940	ENSMUSG00000038013	Wipf2	1110014J05Rik|5730509C05Rik|AA407487|Gm1176|Wich|Wire	WAS/WASL interacting protein family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13000034-2	chr8	12999534	13000534	+	596.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178076, exon 9 of 31)	exon (NM_178076, exon 9 of 31)	-26000.0	NM_010172	14068.0	Mm.4827	NM_010172	ENSMUSG00000031443	F7	AI132620|Cf7|FVII	coagulation factor VII	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80152936-2	chr11	80152436	80153436	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-1226.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41851137-2	chr19	41850637	41851637	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3005.0	NM_177603	212398.0	Mm.222723	NM_177603	ENSMUSG00000047604	Frat2	-	frequently rearranged in advanced T cell lymphomas 2	protein-coding	0.0	2.5	0.0	0.0	0.0	0.0
Merged-chr12-91790499-2	chr12	91789999	91790999	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4063.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49843513-1	chr7	49843013	49844013	+	596.0	f0_balb.idr	intron (NM_133740, intron 13 of 15)	intron (NM_133740, intron 13 of 15)	65155.0	NM_133740	71974.0	Mm.33202	NM_133740	ENSMUSG00000030505	Prmt3	2010005E20Rik|2410018A17Rik|AL033309|Hrmt1l3	protein arginine N-methyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114916068-1	chr6	114915568	114916568	+	596.0	f0_balb.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	5753.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119352994-2	chr8	119352494	119353494	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8456.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92950989-2	chr1	92950489	92951489	+	596.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015525)	promoter-TSS (NR_015525)	-399.0	NR_015525	100037260.0	Mm.442236	NR_015525	ENSMUSG00000100632	9430060I03Rik	-	RIKEN cDNA 9430060I03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-78914112-2	chr1	78913593	78914593	+	596.0	f0_balb.idr|f1_balb.idr	intron (NR_151519, intron 3 of 3)	Lx8|LINE|L1	97182.0	NM_021342	57814.0	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding	14.0	13.5	7.5	1.5	7.0	1.0
Merged-chr13-64150982-2	chr13	64150482	64151482	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361047, intron 1 of 5)	B1_Mus2|SINE|Alu	1391.0	NM_001361047	238673.0	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	0.5	1.0	0.5	0.0	1.0	1.0
Merged-chr15-59030609-2	chr15	59030109	59031109	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	51417.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-21162317-1	chr2	21161817	21162817	+	596.0	f1_c57bl6.idr	Intergenic	RLTR15|LTR|ERVK	43048.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17001243-1	chr16	17000743	17001743	+	596.0	f0_balb.idr	intron (NM_001038663, intron 1 of 7)	ORR1B2|LTR|ERVL-MaLR	17861.0	NM_001038663	26413.0	Mm.196581	NM_011949	ENSMUSG00000063358	Mapk1	9030612K14Rik|AA407128|AU018647|C78273|ERK|Erk2|MAPK2|PRKM2|Prkm1|p41mapk|p42mapk	mitogen-activated protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78836833-1	chr17	78836333	78837333	+	596.0	f1_c57bl6.idr	5' UTR (NM_181649, exon 2 of 10)	5' UTR (NM_181649, exon 2 of 10)	1317.0	NM_181649	53951.0	Mm.220253	NM_181649	ENSMUSG00000050668	Gpatch11	2310002B06Rik|C80922|Ccdc75|L26697	G patch domain containing 11	protein-coding	11.0	0.5	4.5	4.5	1.0	5.0
Merged-chr11-100282186-2	chr11	100281686	100282686	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12315.0	NM_212483	68239.0	Mm.158190	NM_212483	ENSMUSG00000053654	Krt42	2410039E07Rik|K17n|Ka22|ecat6	keratin 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-36511505-1	chr12	36511005	36512005	+	596.0	f0_c57.idr	intron (NM_001289503, intron 6 of 9)	intron (NM_001289503, intron 6 of 9)	95889.0	NR_037309	100499526.0		NR_037309	ENSMUSG00000092917	Mir3472	mmu-mir-3472	microRNA 3472	ncRNA	14.0	0.0	1.5	4.0	3.0	0.5
Merged-chr8-94183920-2	chr8	94183420	94184420	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	4831.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47621761-2	chr6	47621261	47622261	+	595.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26731.0	NM_007971	14056.0	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	0.0	1.0	0.5	4.0	2.5	5.5
Merged-chr6-139888000-2	chr6	139887500	139888500	+	595.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_207683, intron 25 of 31)	intron (NM_207683, intron 25 of 31)	46555.0	NM_011084	18705.0	Mm.333471	NM_011084	ENSMUSG00000030228	Pik3c2g	C80387|PI3K-C2-gamma	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60794604-2	chr18	60794100	60795100	+	595.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-9249.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	0.5	11.0	5.5	12.5	3.5	7.5
Merged-chr1-106139387-2	chr1	106138887	106139887	+	595.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32137.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-82321298-3	chr4	82320804	82321804	+	595.822266	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286127, intron 9 of 10)	intron (NM_001286127, intron 9 of 10)	184475.0	NM_001286127	18028.0	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	28.5	5.5	0.5	11.0	17.5	19.0
Merged-chr7-19337082-2	chr7	19336582	19337582	+	595.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7989.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64734341-2	chr9	64733841	64734841	+	595.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_017382, intron 1 of 4)	intron (NM_017382, intron 1 of 4)	3415.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-42407439-2	chr6	42406939	42407939	+	595.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_199159)	TTS (NM_199159)	1910.0	NM_199159	387512.0	Mm.377919	NM_199159	ENSMUSG00000056203	Tas2r135	Tas2r35|mt2r38	taste receptor, type 2, member 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13453604-2	chr10	13453104	13454104	+	595.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	20792.0	NM_001195065	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167745096-2	chr2	167744615	167745615	+	595.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53938.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3710451-2	chr8	3709951	3710951	+	595.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	10200.0	NM_029465	75863.0	Mm.109183	NM_029465	ENSMUSG00000074491	Clec4g	4930572L20Rik	C-type lectin domain family 4, member g	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-13342825-3	chr1	13342346	13343346	+	595.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	29583.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	9.5	14.0	13.5	4.0	12.5	8.0
Merged-chr18-73548845-3	chr18	73548359	73549359	+	595.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-23846.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6359939-2	chr4	6359440	6360440	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5740.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0.0	12.5	1.0	8.5	5.0	3.0
Merged-chr19-25099747-2	chr19	25099247	25100247	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 13 of 47)	MTD|LTR|ERVL-MaLR	100218.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-13069000-2	chr6	13068500	13069500	+	595.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027992)	promoter-TSS (NM_027992)	-759.0	NM_027992	71900.0	Mm.27742	NM_027992	ENSMUSG00000029571	Tmem106b	2310036D22Rik|5830455K21Rik|6430519M21Rik|AI428776|AI661344	transmembrane protein 106B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8869627-2	chr12	8869127	8870127	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-51680.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108046800-2	chr9	108046300	108047300	+	595.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013785, exon 6 of 6)	3' UTR (NM_013785, exon 6 of 6)	-2464.0	NM_177910	331026.0	Mm.22554	NM_177910	ENSMUSG00000070284	Gmppb	AI317178|E430010H19	GDP-mannose pyrophosphorylase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182881413-2	chr1	182880913	182881913	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356462, intron 5 of 8)	intron (NM_001356462, intron 5 of 8)	-73375.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147539831-2	chr5	147539331	147540331	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028291, intron 16 of 18)	intron (NM_028291, intron 16 of 18)	109675.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	7.0	2.5	6.5	8.0	8.0	4.5
Merged-chr18-3510711-2	chr18	3510211	3511211	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026505, intron 1 of 2)	intron (NM_026505, intron 1 of 2)	2754.0	NM_026505	68010.0	Mm.284863	NM_026505	ENSMUSG00000024232	Bambi	2610003H06Rik	BMP and activin membrane-bound inhibitor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-77534671-2	chr8	77534171	77535171	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14726.0	NM_001081240	102182.0	Mm.197630	NM_178903	ENSMUSG00000037134	Prmt9	AI931714|Prmt10	protein arginine methyltransferase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-13858807-2	chr17	13858307	13859307	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151731, intron 20 of 33)	intron (NR_151731, intron 20 of 33)	-89566.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154605639-2	chr2	154605139	154606139	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-1966.0	NM_021534	59038.0	Mm.24673	NM_021534	ENSMUSG00000000876	Pxmp4	3010018P03Rik|Pmp24	peroxisomal membrane protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-42162189-2	chr15	42161689	42162689	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-292469.0	NM_175456	223513.0	Mm.148913	NM_175456	ENSMUSG00000042895	Abra	C130068O12Rik|STARS	actin-binding Rho activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64103409-2	chr15	64102909	64103909	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 24 of 28)	intron (NM_001276461, intron 24 of 28)	-42961.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	2.5	1.0	3.0	0.5	3.5	4.5
Merged-chr2-105523446-2	chr2	105522946	105523946	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124127.0	NM_009037	19672.0	Mm.4876	NM_009037	ENSMUSG00000005973	Rcn1	Rcn	reticulocalbin 1	protein-coding	0.0	2.0	4.5	0.0	0.0	0.0
Merged-chr5-134316766-2	chr5	134316266	134317266	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2006.0	NM_010365	14886.0	Mm.261570	NM_010365	ENSMUSG00000060261	Gtf2i	6030441I21Rik|BAP-135|Diws1t|GtfII-I|Spin|TFII-I|WBSCR6	general transcription factor II I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9161297-2	chr13	9160797	9161797	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 13 of 17)	intron (NM_172585, intron 13 of 17)	67416.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30656564-2	chr2	30656064	30657064	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21447.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105454260-2	chr8	105453760	105454760	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033371, intron 6 of 10)	intron (NM_001033371, intron 6 of 10)	17162.0	NM_026481	67971.0	Mm.29358	NM_026481	ENSMUSG00000014846	Tppp3	2700055K07Rik|CGI-38|Ceacam9|mmCGM8	tubulin polymerization-promoting protein family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-72102632-2	chr1	72102132	72103132	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97437.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96244167-2	chr3	96243667	96244667	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1290.0	NM_178212	319192.0	Mm.5220	NM_178212	ENSMUSG00000063954	Hist2h2aa2	H2a-614|H2a-615	histone cluster 2, H2aa2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146903839-2	chr5	146903339	146904339	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	-44818.0	NM_025652	66596.0	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	0.0	0.0	0.0	0.5	0.0	2.5
Merged-chr10-75301569-2	chr10	75301069	75302069	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153406, intron 13 of 15)	intron (NM_153406, intron 13 of 15)	-15308.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134026586-2	chr6	134026086	134027086	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9114.0	NM_001303102	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	1.0	1.5	11.0	0.0	16.5	3.0
Merged-chr2-45088781-2	chr2	45088281	45089281	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	21496.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120210746-2	chr10	120210246	120211246	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026617, intron 1 of 6)	Lx8|LINE|L1	1920.0	NM_026617	68212.0	Mm.157426	NM_026617	ENSMUSG00000020225	Tmbim4	0610007H07Rik|AU022431	transmembrane BAX inhibitor motif containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171193817-2	chr1	171193317	171194317	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025557, intron 1 of 2)	intron (NM_025557, intron 1 of 2)	2451.0	NM_025557	66425.0	Mm.482117	NM_025557	ENSMUSG00000038370	Pcp4l1	1500036F01Rik	Purkinje cell protein 4-like 1	protein-coding	0.0	2.0	0.5	0.0	7.0	5.0
Merged-chr5-140517404-2	chr5	140516904	140517904	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021528, intron 1 of 1)	intron (NM_021528, intron 1 of 1)	11795.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-28537718-2	chr2	28537218	28538218	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145836, intron 1 of 17)	intron (NM_001145836, intron 1 of 17)	4254.0	NM_001145836	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23103046-2	chr16	23102546	23103546	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-4422.0	NR_152586	13682.0	Mm.260084	NM_013506	ENSMUSG00000022884	Eif4a2	4833432N07Rik|BM-010|Ddx2b|Eif4|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90906784-2	chr2	90906284	90907284	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361372, intron 2 of 3)	intron (NM_001361372, intron 2 of 3)	1782.0	NM_001361372	67136.0	Mm.330394	NM_025991	ENSMUSG00000005505	Kbtbd4	2510026C23Rik	kelch repeat and BTB (POZ) domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117348454-2	chr11	117347954	117348954	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113488, intron 1 of 9)	intron (NM_001113488, intron 1 of 9)	16141.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-71897373-2	chr10	71896873	71897873	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83317.0	NR_003644	108950.0	Mm.212793	NM_175390		1700049L16Rik	-	hematological and neurological expressed 1-like pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11041498-2	chr8	11040998	11041998	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_046017, intron 1 of 4)	B3A|SINE|B2	-33068.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119667574-1	chr4	119667074	119668074	+	595.5	f0_balb.idr	Intergenic	Intergenic	-8629.0	NM_008191	14916.0	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-58586896-2	chr2	58586396	58587396	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289660, intron 1 of 7)	intron (NM_001289660, intron 1 of 7)	19562.0	NM_001289660	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-96121296-2	chr8	96120796	96121796	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	-232931.0	NM_010325	14719.0	Mm.230169	NM_010325	ENSMUSG00000031672	Got2	AL022787|FABP-pm|Got-2|Kyat4|mAspAT	glutamatic-oxaloacetic transaminase 2, mitochondrial	protein-coding	1.0	0.0	0.0	3.5	0.0	0.0
Merged-chr3-121499801-2	chr3	121499301	121500301	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145394, intron 9 of 14)	B4|SINE|B4	32543.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-51191986-2	chr18	51191486	51192486	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081224, intron 1 of 1)	intron (NM_001081224, intron 1 of 1)	74088.0	NM_001081224	71373.0	Mm.63546	NM_001081224	ENSMUSG00000073565	Prr16	5430406M13Rik|AI607429	proline rich 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30248238-2	chr14	30247738	30248738	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 3 of 46)	intron (NM_001083616, intron 3 of 46)	105248.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99446587-2	chr7	99446087	99447087	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_201352, intron 7 of 17)	intron (NM_201352, intron 7 of 17)	-19417.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-17978562-2	chr13	17978062	17979062	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	14789.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117948089-2	chr11	117947589	117948589	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	21277.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99138515-2	chr9	99138015	99139015	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 1 of 23)	intron (NM_029094, intron 1 of 23)	1696.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35041265-2	chr18	35040766	35041766	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(GGA)n|Simple_repeat|Simple_repeat	-77646.0	NM_009818	12385.0	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	2.0	0.5	0.0	6.5	0.0	0.0
Merged-chr15-5500517-2	chr15	5500017	5501017	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045274, intron 1 of 4)	L1Md_A|LINE|L1	4199.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34713169-1	chr17	34712669	34713669	+	595.5	f1_c57bl6.idr	exon (NM_031176, exon 18 of 33)	exon (NM_031176, exon 18 of 33)	30728.0	NM_009780	12268.0	Mm.477109	NM_009780	ENSMUSG00000073418	C4b	C4|Ss	complement component 4B (Chido blood group)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37965956-2	chr19	37965456	37966456	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 19 of 53)	intron (NM_001302140, intron 19 of 53)	77621.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	2.0	2.0	1.0	4.5	1.0	4.5
Merged-chr1-86509044-2	chr1	86508544	86509544	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17513.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41446300-2	chr19	41445800	41446800	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-61230.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	16.0	19.0	12.0	7.0	23.0	8.5
Merged-chr6-116153883-2	chr6	116153383	116154383	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 1 of 5)	intron (NM_177412, intron 1 of 5)	39491.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32794839-2	chr12	32794339	32795339	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-25496.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.0	5.0	2.0	0.0	5.0	7.0
Merged-chr9-61198173-2	chr9	61197673	61198673	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59658.0	NR_045705	619328.0	Mm.325722	NR_045705	ENSMUSG00000110998	I730028E13Rik	-	RIKEN cDNA I730028E13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22843966-2	chr11	22843466	22844466	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	15769.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-72196857-2	chr4	72196357	72197357	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285530, intron 4 of 17)	intron (NM_001285530, intron 4 of 17)	4036.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100099431-2	chr12	100098931	100099931	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12900.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-103972157-2	chr8	103971644	103972644	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-129481.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10899051-2	chr16	10898551	10899551	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	15746.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70481258-2	chr17	70480758	70481758	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 4 of 14)	B2_Mm2|SINE|B2	-40636.0	NM_001347414	224997.0	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	DLG associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-93189859-2	chr13	93189359	93190359	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_154997, intron 1 of 15)	intron (NR_154997, intron 1 of 15)	2558.0	NM_001361536	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	23.0	78.5	70.0	23.0	53.0	62.0
Merged-chr15-22082512-2	chr15	22082012	22083012	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	632472.0	NM_001165971	545091.0	Mm.475598	NM_001165971		Hnrnpa1l2-ps2	EG545091|Gm5803	heterogeneous nuclear ribonucleoprotein A1-like 2, pseudogene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-108332203-2	chr10	108331703	108332703	+	595.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054056)	promoter-TSS (NM_054056)	14.0	NM_054056	114774.0	Mm.391419	NM_054056	ENSMUSG00000035873	Pawr	2310001G03Rik|PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding	0.0	0.0	0.5	0.0	2.0	2.5
Merged-chr19-38223574-2	chr19	38223073	38224073	+	595.5	f0_c57.idr|f1_c57bl6.idr	intron (NM_001081075, intron 1 of 13)	intron (NM_001081075, intron 1 of 13)	559.0	NM_001081075	70567.0	Mm.30607	NM_001081075	ENSMUSG00000054237	Fra10ac1	5730455O13Rik|AI448293	FRA10AC1 homolog (human)	protein-coding	10.5	32.0	16.0	0.5	28.5	32.0
Merged-chr19-41368392-2	chr19	41367892	41368892	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	B3A|SINE|B2	16678.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	8.5	49.0	22.0	28.0	27.5	27.5
Merged-chr15-88836227-2	chr15	88835727	88836727	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16581.0	NM_029720	76737.0	Mm.292567	NM_029720	ENSMUSG00000023272	Creld2	5730592L21Rik|C85758	cysteine-rich with EGF-like domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156787863-2	chr2	156787363	156788363	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12399.0	NM_172118	98932.0	Mm.271770	NM_172118	ENSMUSG00000067818	Myl9	AI327049|MLC20|Mylc2c|RLC-C	myosin, light polypeptide 9, regulatory	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39470589-1	chr10	39470089	39471089	+	595.5	f0_balb.idr	intron (NM_001122893, intron 3 of 13)	intron (NM_001122893, intron 3 of 13)	100790.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-108534416-2	chr13	108533916	108534916	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-119761.0	NM_011056	238871.0	Mm.434429	NM_011056	ENSMUSG00000021699	Pde4d	9630011N22Rik|Dpde3	phosphodiesterase 4D, cAMP specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117191397-3	chr4	117190882	117191882	+	595.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8758.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191222139-2	chr1	191221639	191222639	+	595.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2315.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr8-23249152-2	chr8	23248649	23249649	+	595.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_020585, intron 2 of 4)	intron (NM_020585, intron 2 of 4)	7931.0	NM_020585	57437.0	Mm.196269	NM_020585	ENSMUSG00000015341	Golga7	AB041568|C130038N16Rik|GCP16|GOLGA3AP1|HSPC041|R75586	golgi autoantigen, golgin subfamily a, 7	protein-coding	1.0	2.0	0.0	5.0	0.0	1.5
Merged-chr8-109458726-2	chr8	109458226	109459226	+	595.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35301.0	NM_019938	56523.0	Mm.42166	NM_019938	ENSMUSG00000031727	Pmfbp1	1700016D22Rik|F77|Stap	polyamine modulated factor 1 binding protein 1	protein-coding	9.5	10.5	10.0	15.0	19.0	24.5
Merged-chr17-64621222-2	chr17	64620722	64621722	+	595.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	19573.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105609444-2	chr8	105608944	105609944	+	595.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081241, intron 1 of 21)	L2|LINE|L2	4215.0	NM_001081241	75687.0	Mm.41261	NM_001081241	ENSMUSG00000038604	Ripor1	2310066E14Rik|AI837433|Fam65a	RHO family interacting cell polarization regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128743478-3	chr10	128742945	128743945	+	595.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358745, intron 3 of 25)	intron (NM_001358745, intron 3 of 25)	631.0	NM_016811	13139.0	Mm.291235	NM_016811	ENSMUSG00000025357	Dgka	80kDa|AW146112|Dagk1	diacylglycerol kinase, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-108944248-3	chr7	108943773	108944773	+	595.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9858.0	NM_025344	66085.0	Mm.182962	NM_025344	ENSMUSG00000031029	Eif3f	0610037M02Rik|AA409853|Eif3s5	eukaryotic translation initiation factor 3, subunit F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128630646-1	chr6	128630146	128631146	+	595.333313	f0_balb.idr	Intergenic	Intergenic	-7712.0	NM_010737	17057.0	Mm.16729	NM_010737	ENSMUSG00000030361	Klrb1a	Ly55a|NKR-P1.7|NKR-P1A|NKRP12|Nkrp1-a|Nkrp1a|ly-55A	killer cell lectin-like receptor subfamily B member 1A	protein-coding	19.0	28.5	34.5	5.5	5.5	1.5
Merged-chr19-6923440-2	chr19	6922940	6923940	+	595.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039494, intron 3 of 4)	intron (NM_001039494, intron 3 of 4)	-1632.0	NM_007953	26379.0	Mm.386776	NM_007953	ENSMUSG00000024955	Esrra	ERRalpha|Err1|Estrra|Nr3b1	estrogen related receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95703668-2	chr8	95703168	95704168	+	595.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_145602, intron 1 of 13)	intron (NM_145602, intron 1 of 13)	631.0	NM_145602	234593.0	Mm.29846	NM_145602	ENSMUSG00000036564	Ndrg4	D8Bwg1337e|Ndr1-rs|Ndr4|R74996|SMAP-8	N-myc downstream regulated gene 4	protein-coding	0.0	3.0	0.0	0.0	5.5	0.0
Merged-chr2-36102752-2	chr2	36102209	36103209	+	595.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355125, intron 4 of 8)	intron (NM_001355125, intron 4 of 8)	1351.0	NM_001083126	16874.0	Mm.12881	NM_008500	ENSMUSG00000026890	Lhx6	Lhx6.1	LIM homeobox protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-52089616-2	chr16	52089116	52090116	+	595.25	f0_balb.idr|f0_c57.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	58067.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-64832817-2	chr10	64832317	64833317	+	595.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164376, intron 13 of 17)	ORR1A2|LTR|ERVL-MaLR	287550.0	NR_152621	102632700.0		NR_152621	ENSMUSG00000100528	Gm28881	-	predicted gene 28881	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50831505-2	chr14	50831005	50832005	+	595.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009351, intron 44 of 54)	intron (NM_009351, intron 44 of 54)	23589.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	2.5	0.5	4.0	2.0	0.0	2.0
Merged-chr17-57220129-2	chr17	57219600	57220600	+	595.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_009778, exon 18 of 41)	exon (NM_009778, exon 18 of 41)	-2872.0	NR_105944	102465591.0		NR_105944	ENSMUSG00000099066	Mir6978	Gm27858|mmu-mir-6978	microRNA 6978	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147401047-2	chr4	147400527	147401527	+	595.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	RLTR10-int|LTR|ERVK	-152250.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16143184-2	chr19	16142684	16143684	+	595.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	10353.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5792243-2	chr19	5791743	5792743	+	595.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	3738.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44138094-2	chr9	44137603	44138603	+	595.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359530, intron 5 of 14)	PB1D10|SINE|Alu	3445.0	NM_001359530	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62968545-4	chr9	62968049	62969049	+	595.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 1 of 13)	Charlie1a|DNA|hAT-Charlie	12330.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82908298-2	chr18	82907798	82908798	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2581.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23763625-1	chr11	23763125	23764125	+	595.0	f0_balb.idr	intron (NM_009044, intron 1 of 9)	B4A|SINE|B4	7345.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-69823327-1	chr2	69822827	69823827	+	595.0	f0_balb.idr	intron (NM_001360394, intron 1 of 3)	intron (NM_001360394, intron 1 of 3)	486.0	NM_001360394	277396.0	Mm.138073	NM_177784	ENSMUSG00000042155	Klhl23	C130068N17Rik	kelch-like 23	protein-coding	1.0	1.5	4.0	1.0	1.5	4.0
Merged-chr1-63180789-2	chr1	63180289	63181289	+	595.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_018796)	TTS (NM_018796)	1766.0	NR_028558	100217464.0	Mm.484706	NR_028558	ENSMUSG00000064602	Snora41	MBI-83	small nucleolar RNA, H/ACA box 41	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-36766185-1	chr9	36765685	36766685	+	595.0	f1_balb.idr	intron (NM_008408, intron 1 of 17)	intron (NM_008408, intron 1 of 17)	1393.0	NM_008408	16430.0	Mm.2863	NM_008408	ENSMUSG00000032116	Stt3a	AA408947|BB081708|Itm1	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	protein-coding	6.5	41.0	9.0	15.5	10.5	22.5
Merged-chr5-139510773-2	chr5	139510273	139511273	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31D_MM|LTR|ERVK	-12978.0	NR_040701	74973.0	Mm.141282	NR_040701	ENSMUSG00000106056	4930500L23Rik	-	RIKEN cDNA 4930500L23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127079593-2	chr10	127079093	127080093	+	595.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001301014, exon 1 of 18)	5' UTR (NM_001301014, exon 1 of 18)	686.0	NM_001033263	216439.0	Mm.336761	NM_001033263	ENSMUSG00000025422	Agap2	AGAP-2|Centg1|PIKE|cnt-g1|mKIAA0167	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-77032610-2	chr14	77032096	77033096	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172488, intron 5 of 7)	L1MB3|LINE|L1	4021.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	28.5	69.5	26.0	14.5	27.0	11.0
Merged-chr6-145767655-2	chr6	145767155	145768155	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40728.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	11.0	8.0	14.5	1.5	11.5	10.5
Merged-chr5-90413462-1	chr5	90412962	90413962	+	595.0	f0_balb.idr	Intergenic	Lx6|LINE|L1	46465.0	NR_045618	791294.0	Mm.30508	NR_045618	ENSMUSG00000054945	Gm9958	-	predicted gene 9958	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108209094-1	chr3	108208594	108209594	+	595.0	f1_balb.idr	5' UTR (NM_175183, exon 2 of 12)	5' UTR (NM_175183, exon 2 of 12)	1433.0	NM_001289545	72522.0	Mm.187326	NM_175183	ENSMUSG00000048997	Atxn7l2	2610528J18Rik	ataxin 7-like 2	protein-coding	0.5	0.0	1.5	0.0	0.0	0.5
Merged-chr5-93105522-1	chr5	93105022	93106022	+	595.0	f1_balb.idr	intron (NM_001009818, intron 1 of 9)	intron (NM_001009818, intron 1 of 9)	12106.0	NM_001347377	52398.0	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	0.5	3.5	2.5	0.0	0.0	0.0
Merged-chr1-121404825-1	chr1	121404325	121405325	+	595.0	f0_balb.idr	Intergenic	Lx9|LINE|L1	-26242.0	NM_001025156	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	0.0	3.0	0.5	0.0	0.0	0.0
Merged-chr12-57281622-1	chr12	57281122	57282122	+	595.0	f0_balb.idr	intron (NM_001164370, intron 1 of 9)	intron (NM_001164370, intron 1 of 9)	51197.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr12-111700172-2	chr12	111699672	111700672	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12781.0	NM_001324481	70369.0	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171291151-1	chr1	171290651	171291651	+	595.0	f1_balb.idr	intron (NM_025388, intron 2 of 6)	intron (NM_025388, intron 2 of 6)	-3190.0	NM_013919	30941.0	Mm.27510	NM_013919	ENSMUSG00000053483	Usp21	ESTM28|Usp16|Usp23|W53272	ubiquitin specific peptidase 21	protein-coding	6.0	15.0	0.0	10.0	13.0	6.5
Merged-chr2-128758338-1	chr2	128757838	128758838	+	595.0	f1_balb.idr	intron (NM_008587, intron 6 of 18)	B3A|SINE|B2	59423.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	1.5	2.0	4.0	3.5	4.0	3.5
Merged-chr2-112273645-1	chr2	112273145	112274145	+	595.0	f0_balb.idr	intron (NM_133649, intron 1 of 24)	B3A|SINE|B2	7331.0	NM_133649	107723.0	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	0.0	5.5	4.0	0.0	1.5	2.5
Merged-chr10-75217984-1	chr10	75217484	75218484	+	595.0	f0_balb.idr	intron (NM_001145826, intron 1 of 18)	ORR1B1|LTR|ERVL-MaLR	5594.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32587655-2	chr11	32587155	32588155	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 5 of 18)	intron (NM_009288, intron 5 of 18)	54389.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	2.0	0.0	0.0	0.0	0.0	2.5
Merged-chr10-128362688-2	chr10	128362188	128363188	+	595.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026444)	TTS (NM_026444)	7349.0	NM_001081040	210582.0	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-83768646-1	chr18	83768146	83769146	+	595.0	f1_c57bl6.idr	Intergenic	Intergenic	317916.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-116963283-2	chr2	116962783	116963783	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	7SK|RNA|RNA	63131.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-166381610-2	chr1	166381110	166382110	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030245, intron 1 of 7)	intron (NM_030245, intron 1 of 7)	2443.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122139986-1	chr8	122139486	122140486	+	595.0	f0_balb.idr	Intergenic	Intergenic	-142155.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	1.5	0.0	0.5	1.5	0.0	0.5
Merged-chr5-32744268-1	chr5	32743768	32744768	+	595.0	f1_c57bl6.idr	intron (NM_001347332, intron 2 of 8)	intron (NM_001347332, intron 2 of 8)	2074.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	27.0	49.5	25.5	41.5	44.0	27.0
Merged-chr18-73821733-1	chr18	73821233	73822233	+	595.0	f1_balb.idr	Intergenic	Intergenic	-6341.0	NM_145494	107029.0	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	3.0	0.5	0.5	3.5	5.5	1.0
Merged-chr1-72244970-2	chr1	72244470	72245470	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155355, intron 1 of 3)	intron (NR_155355, intron 1 of 3)	977.0	NR_155355	320933.0	Mm.440953	NR_155355		D230017M19Rik	B930094L07Rik	RIKEN cDNA D230017M19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10540984-2	chr17	10540484	10541484	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 4 of 4)	intron (NM_027032, intron 4 of 4)	84768.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-83721236-2	chr2	83720736	83721736	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3161.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	6.5	7.5	4.5	1.0	14.5	6.0
Merged-chr4-152123580-2	chr4	152123080	152124080	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207689, intron 9 of 9)	intron (NM_207689, intron 9 of 9)	5345.0	NM_019585	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97338751-1	chr11	97338251	97339251	+	595.0	f1_balb.idr	exon (NM_001081220, exon 11 of 11)	exon (NM_001081220, exon 11 of 11)	13322.0	NM_001081220	217143.0	Mm.32622	NM_175453	ENSMUSG00000070337	Gpr179	5330439C02Rik|Gpr158l1	G protein-coupled receptor 179	protein-coding	0.0	2.0	0.0	9.0	0.0	0.5
Merged-chr4-134542666-2	chr4	134542166	134543166	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029100, intron 8 of 11)	intron (NM_029100, intron 8 of 11)	-7279.0	NM_029759	76824.0	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	0.0	0.0	0.0	2.5	0.0	0.5
Merged-chr13-37583032-1	chr13	37582532	37583532	+	595.0	f1_balb.idr	Intergenic	Intergenic	237687.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	7.5	16.5	17.5	2.0	7.5	14.0
Merged-chr11-46472533-2	chr11	46472033	46473033	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134250, intron 5 of 6)	Lx5|LINE|L1	17602.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	3.0	11.5	0.0	0.0	2.5	0.0
Merged-chr12-110549426-2	chr12	110548926	110549926	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081457, intron 5 of 12)	intron (NM_001081457, intron 5 of 12)	-41948.0	NR_033340	319786.0	Mm.129691	NR_033340		B930059L03Rik	-	RIKEN cDNA B930059L03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-43022117-2	chr6	43021617	43022617	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66617.0	NM_146656	258650.0	Mm.377613	NM_146656	ENSMUSG00000073110	Olfr444	MOR261-2	olfactory receptor 444	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72598893-2	chr5	72598393	72599393	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-11343.0	NM_001024147	545758.0	Mm.332426	NM_001024147	ENSMUSG00000060204	Gm5868	EG545758	predicted gene 5868	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96321011-1	chr9	96320511	96321511	+	595.0	f1_c57bl6.idr	3' UTR (NM_001184710, exon 10 of 10)	3' UTR (NM_001184710, exon 10 of 10)	42704.0	NM_001357213	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0.0	1.0	1.5	0.0	5.5	1.0
Merged-chr8-114771612-2	chr8	114771112	114772112	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019573, intron 8 of 8)	intron (NM_019573, intron 8 of 8)	331960.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-66515891-2	chr16	66515391	66516391	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26C_MM|LTR|ERVK	-141227.0	NR_040512	75501.0	Mm.394300	NR_040512	ENSMUSG00000092599	1700010K23Rik	-	RIKEN cDNA 1700010K23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-48996715-2	chr7	48996215	48997215	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	37642.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43444944-1	chr1	43444444	43445444	+	595.0	f0_balb.idr	promoter-TSS (NM_010879)	promoter-TSS (NM_010879)	-807.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98507929-2	chr15	98507429	98508429	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	10455.0	NM_001001807	258502.0	Mm.377539	NM_001001807	ENSMUSG00000054036	Olfr279	MOR122-1|Olfr234|Olfr234-ps1|Olfr279-ps1	olfactory receptor 279	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121374713-2	chr14	121374226	121375226	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145465, intron 1 of 10)	intron (NM_145465, intron 1 of 10)	4504.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0.0	13.0	0.5	10.5	0.0	1.0
Merged-chr6-84579034-2	chr6	84578534	84579534	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177713, intron 3 of 6)	intron (NM_001177713, intron 3 of 6)	14776.0	NM_175475	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90582486-1	chr2	90581986	90582986	+	595.0	f0_c57.idr	Intergenic	Intergenic	-1839.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104259927-2	chr9	104259427	104260427	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 1 of 56)	L1MCc|LINE|L1	3003.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4259740-2	chr11	4259240	4260240	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008501, intron 1 of 3)	intron (NM_008501, intron 1 of 3)	2172.0	NM_008501	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61576061-1	chr8	61575561	61576561	+	595.0	f1_balb.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	15108.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	39.0	59.0	50.0	22.5	35.5	37.5
Merged-chr5-20257327-1	chr5	20256827	20257827	+	595.0	f0_balb.idr	intron (NM_001170746, intron 6 of 22)	intron (NM_001170746, intron 6 of 22)	349809.0	NM_015823	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71257826-1	chr17	71257326	71258326	+	595.0	f1_balb.idr	intron (NM_001357338, intron 4 of 7)	HAL1|LINE|L1	53172.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	3.5	4.5	17.0	23.5	70.5	48.0
Merged-chr1-152437509-2	chr1	152437009	152438009	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177756, intron 1 of 11)	IAP-d-int|LTR|ERVK	37642.0	NM_177756	269132.0	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96330411-2	chr10	96329911	96330911	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	104204.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-86777638-2	chr9	86777138	86778138	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277986, intron 24 of 29)	intron (NM_001277986, intron 24 of 29)	34005.0	NM_178738	244954.0	Mm.257629	NM_178738	ENSMUSG00000033491	Prss35	6030424L22Rik|P3D9	protease, serine 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27312720-2	chr2	27312220	27313220	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 3 of 29)	intron (NR_133905, intron 3 of 29)	-65417.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88095829-2	chr1	88095329	88096329	+	595.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_201642, exon 1 of 5)	exon (NM_201642, exon 1 of 5)	828.0	NM_201642	394432.0	Mm.300095	NM_201642	ENSMUSG00000090124	Ugt1a7c	A10'|A13|Ugt1a10	UDP glucuronosyltransferase 1 family, polypeptide A7C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-98281106-1	chr3	98280606	98281606	+	595.0	f1_c57bl6.idr	intron (NM_008256, intron 1 of 9)	intron (NM_008256, intron 1 of 9)	675.0	NM_008256	15360.0	Mm.289131	NM_008256	ENSMUSG00000027875	Hmgcs2	1300002P16|mHS	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2	protein-coding	0.0	0.0	1.0	8.0	0.0	0.0
Merged-chr10-117810002-1	chr10	117809502	117810502	+	595.0	f0_balb.idr	Intergenic	Intergenic	-17297.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40508051-1	chr12	40507551	40508551	+	595.0	f0_balb.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	61998.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91788346-2	chr12	91787846	91788846	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-1910.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32214352-1	chr11	32213852	32214852	+	595.0	f1_balb.idr	intron (NM_010117, intron 5 of 17)	intron (NM_010117, intron 5 of 17)	7941.0	NM_010117	13650.0	Mm.11545	NM_010117	ENSMUSG00000020282	Rhbdf1	C16ORF8|Dist|Dist1|Egfr-rs|mKIAA4242	rhomboid 5 homolog 1	protein-coding	0.0	0.0	1.0	3.5	0.0	0.5
Merged-chr4-106446855-1	chr4	106446355	106447355	+	595.0	f1_balb.idr	intron (NM_153565, intron 9 of 11)	intron (NM_153565, intron 9 of 11)	17470.0	NM_153565	100102.0	Mm.133268	NM_153565	ENSMUSG00000044254	Pcsk9	AI415265|AI747682|FH3|HCHOLA3|Narc1|PC9	proprotein convertase subtilisin/kexin type 9	protein-coding	0.0	4.0	0.0	5.0	5.0	0.0
Merged-chr1-61101801-2	chr1	61101301	61102301	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16C|LTR|ERVL	123887.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr5-120620386-2	chr5	120619886	120620886	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028041, intron 8 of 19)	intron (NM_028041, intron 8 of 19)	7256.0	NM_028041	71990.0	Mm.24495	NM_028041	ENSMUSG00000029599	Ddx54	2410015A15Rik|AI414901|DP97	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-104039743-1	chr5	104039243	104040243	+	595.0	f0_balb.idr	Intergenic	B3|SINE|B2	-7121.0	NM_028794	74167.0	Mm.241484	NM_028794	ENSMUSG00000029310	Nudt9	1190002C07Rik|ADPR-PPase|AI462474	nudix (nucleoside diphosphate linked moiety X)-type motif 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89784361-2	chr3	89783861	89784861	+	595.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027315)	TTS (NM_027315)	10752.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122775577-2	chr8	122775077	122776077	+	595.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144932)	promoter-TSS (NM_144932)	91.0	NM_144932	257633.0	Mm.334875	NM_144932	ENSMUSG00000015016	Acsf3	BB101783	acyl-CoA synthetase family member 3	protein-coding	0.0	2.5	2.5	0.0	1.0	7.0
Merged-chr12-112677663-2	chr12	112677163	112678163	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1177.0	NM_001100460	382639.0	Mm.11350	NM_001100460	ENSMUSG00000037638	Zbtb42	EG382639|Gm5188|simiRP58	zinc finger and BTB domain containing 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45278113-2	chr7	45277613	45278613	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4760.0	NM_001033176	76713.0	Mm.425445	NM_001033176	ENSMUSG00000070568	Slc6a21	1700039E15Rik|Gm19188	solute carrier family 6 member 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-44371783-2	chr17	44371283	44372283	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	183211.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-11275270-2	chr13	11274770	11275770	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-246782.0	NR_027813	664793.0	Mm.410565	NR_027813	ENSMUSG00000113593	Zp4-ps	EG664793|Zp4|Zpb	zona pellucida glycoprotein 4, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97700509-2	chr15	97700009	97701009	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028003, intron 3 of 16)	intron (NM_028003, intron 3 of 16)	5313.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-23237894-1	chr1	23237394	23238394	+	595.0	f0_balb.idr	Intergenic	Intergenic	-34375.0	NR_029533	387225.0		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12814431-2	chr19	12813931	12814931	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134152, intron 3 of 8)	Lx2B|LINE|L1	15852.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	1.0	4.5	3.5	10.0	20.0	5.0
Merged-chr4-150605466-1	chr4	150604966	150605966	+	595.0	f1_balb.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	46708.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	19.0	28.0	20.0	8.5	28.5	24.0
Merged-chr14-76193832-2	chr14	76193332	76194332	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57630.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181657648-2	chr2	181657148	181658148	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13992.0	NM_009236	20672.0	Mm.264904	NM_009236	ENSMUSG00000046470	Sox18	AI385749|Ra|Ragl	SRY (sex determining region Y)-box 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88125535-2	chr7	88125035	88126035	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001143834, intron 10 of 10)	intron (NM_001143834, intron 10 of 10)	-152550.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-8986561-2	chr13	8986061	8987061	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027000, intron 8 of 16)	intron (NM_027000, intron 8 of 16)	9451.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115155534-1	chr5	115155034	115156034	+	595.0	f1_c57bl6.idr	intron (NM_175403, intron 1 of 4)	intron (NM_175403, intron 1 of 4)	2642.0	NM_175403	109154.0	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	1.5	0.0	2.0	0.0	2.5	0.5
Merged-chr10-82902877-1	chr10	82902377	82903377	+	595.0	f1_c57bl6.idr	Intergenic	B4|SINE|B4	36251.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	0.0	0.0	0.0	1.5	2.5	1.5
Merged-chr4-24894396-2	chr4	24893896	24894896	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa-int|LTR|ERVL-MaLR	-3687.0	NM_026742	68493.0	Mm.204831	NM_026742	ENSMUSG00000028261	Ndufaf4	1110007M04Rik|3000003G13Rik|AW214064	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21055339-1	chr10	21054839	21055839	+	595.0	f1_c57bl6.idr	intron (NM_001177776, intron 3 of 6)	intron (NM_001177776, intron 3 of 6)	14519.0	NM_001177776	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	0.0	2.0	2.0	3.5	9.5	3.0
Merged-chr1-95593034-2	chr1	95592534	95593534	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009183, intron 4 of 4)	intron (NM_009183, intron 4 of 4)	74560.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125603003-2	chr7	125602503	125603503	+	595.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021887)	promoter-TSS (NM_021887)	-426.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	14.5	35.5	34.5	7.5	7.0	17.5
Merged-chr3-145921603-2	chr3	145921103	145922103	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2659.0	NM_009740	12042.0	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146662247-2	chr3	146661746	146662746	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10929.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110173217-1	chr5	110172717	110173717	+	595.0	f1_c57bl6.idr	intron (NR_040431, intron 1 of 2)	MTEa|LTR|ERVL-MaLR	3287.0	NR_040431	100504007.0	Mm.441495	NR_040430	ENSMUSG00000086247	Gm15787	-	predicted gene 15787	ncRNA	0.0	0.0	0.0	1.5	0.0	0.0
Merged-chr17-34142082-1	chr17	34141582	34142582	+	595.0	f1_c57bl6.idr	Intergenic	Intergenic	-3334.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	11.0	45.5	21.0	5.5	22.0	23.5
Merged-chr10-75711752-2	chr10	75711252	75712252	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172549, intron 26 of 36)	intron (NM_172549, intron 26 of 36)	52605.0	NM_172549	104248.0	Mm.257404	NM_172549	ENSMUSG00000020196	Cabin1	A330070M20Rik|Cain|Ppp3in	calcineurin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4405555-1	chr16	4405055	4406055	+	595.0	f0_balb.idr	intron (NM_009624, intron 2 of 10)	intron (NM_009624, intron 2 of 10)	14943.0	NM_001291910	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128360541-2	chr7	128360041	128361041	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	57631.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0.0	0.0	0.0	1.0	1.0	2.0
Merged-chr4-139167507-1	chr4	139167007	139168007	+	595.0	f1_c57bl6.idr	Intergenic	Intergenic	13148.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	27.5	46.0	23.0	11.0	5.5	9.0
Merged-chr7-102441193-1	chr7	102440693	102441693	+	595.0	f1_balb.idr	promoter-TSS (NM_009103)	promoter-TSS (NM_009103)	-502.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	3.0	6.0	10.0	5.5	3.5	3.5
Merged-chr4-56940780-2	chr4	56940280	56941280	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175518, intron 1 of 17)	MTD|LTR|ERVL-MaLR	6649.0	NM_175518	242474.0	Mm.296632	NM_175518	ENSMUSG00000055296	Tmem245	A630051L19Rik|AI957324|D730040F13Rik	transmembrane protein 245	protein-coding	0.0	0.0	0.0	0.0	4.5	1.0
Merged-chr7-44904812-2	chr7	44904312	44905312	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077264, intron 11 of 22)	intron (NM_001077264, intron 11 of 22)	8733.0	NM_027376	70300.0	Mm.276298	NM_027376	ENSMUSG00000011658	Fuz	2600013E07Rik|b2b1273Clo	fuzzy planar cell polarity protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-18845529-2	chr8	18845029	18846029	+	595.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026792)	promoter-TSS (NM_026792)	-750.0	NM_026792	52123.0	Mm.24117	NM_026792	ENSMUSG00000031467	Agpat5	1110013A05Rik|D8Ertd319e	1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80076799-1	chr7	80076299	80077299	+	595.0	f1_balb.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	-1542.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	20.5	25.0	8.5	10.5	51.5	14.0
Merged-chr18-65681505-1	chr18	65681005	65682005	+	595.0	f1_c57bl6.idr	intron (NM_001361052, intron 6 of 8)	intron (NM_001361052, intron 6 of 8)	-16763.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	5.0	22.0	15.5	36.0	76.0	44.0
Merged-chr12-66142372-2	chr12	66141872	66142872	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	142029.0	NM_001162933	238217.0	Mm.188575	NM_001162933	ENSMUSG00000060499	Rpl10l	EG238217	ribosomal protein L10-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17510456-2	chr10	17509956	17510956	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-212772.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-58025428-2	chr5	58024928	58025928	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310608, intron 3 of 3)	intron (NM_001310608, intron 3 of 3)	307347.0	NM_018764	54216.0	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-76862499-2	chr17	76861999	76862999	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1001476.0	NR_033456	100043885.0	Mm.127562	NR_033456		Gm4710	-	predicted gene 4710	ncRNA	4.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106777152-1	chr11	106776652	106777652	+	595.0	f0_balb.idr	non-coding (NR_027785, exon 3 of 8)	non-coding (NR_027785, exon 3 of 8)	2314.0	NM_001353435	50776.0	Mm.859	NM_015810	ENSMUSG00000020718	Polg2	mtPolB|p55|polG-beta	polymerase (DNA directed), gamma 2, accessory subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59329285-2	chr2	59328785	59329785	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 11 of 20)	intron (NM_175464, intron 11 of 20)	57397.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11459264-2	chr4	11458764	11459764	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-26694.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100424920-1	chr15	100424420	100425420	+	595.0	f1_balb.idr	intron (NR_040351, intron 1 of 2)	intron (NR_040351, intron 1 of 2)	1727.0	NR_040351	432982.0	Mm.234608	NM_001034883	ENSMUSG00000087444	Gm5475	EG432982	predicted gene 5475	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9074791-2	chr13	9074291	9075291	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-19090.0	NM_001311117	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75576934-2	chr7	75576434	75577434	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 3 of 36)	ORR1D1|LTR|ERVL-MaLR	121400.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31064378-2	chr6	31063878	31064878	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1285.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93839296-1	chr16	93838796	93839796	+	595.0	f0_c57.idr	intron (NM_001045529, intron 1 of 16)	RMER6D|LTR|ERVK	7175.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55101840-1	chr13	55101340	55102340	+	595.0	f1_c57bl6.idr	Intergenic	Intergenic	-1540.0	NM_011307	20184.0	Mm.259301	NM_011307	ENSMUSG00000025878	Uimc1	9430016E08Rik|D330018D10Rik|D630032M02Rik|RIP110|Rxrip110	ubiquitin interaction motif containing 1	protein-coding	5.0	3.0	6.0	5.0	3.0	0.5
Merged-chr18-44790095-2	chr18	44789595	44790595	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085373, intron 1 of 18)	Lx5|LINE|L1	22087.0	NM_001085373	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-100835615-2	chr10	100835115	100836115	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93980.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27859867-2	chr17	27859367	27860367	+	594.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080769, intron 1 of 20)	intron (NM_001080769, intron 1 of 20)	3360.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172305908-3	chr1	172305410	172306410	+	594.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6457.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	4.5	1.0	15.0	24.5	32.5	16.5
Merged-chr5-146769757-3	chr5	146769213	146770213	+	594.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	25243.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0.5	25.0	6.0	0.5	5.0	1.0
Merged-chr8-106499561-2	chr8	106499061	106500061	+	594.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-11291.0	NM_007665	12560.0	Mm.4658	NM_007665	ENSMUSG00000061048	Cdh3	AI385538|Cadp|Cdhp|P-cadherin|Pcad	cadherin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16946541-2	chr7	16946041	16947041	+	594.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001099636, exon 1 of 1)	exon (NM_001099636, exon 1 of 1)	1859.0	NM_001099636	434128.0	Mm.483018	NM_001099636	ENSMUSG00000070802	Pnmal2	EG434128	PNMA-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55644327-2	chr19	55643827	55644827	+	594.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	57877.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85246387-1	chr1	85245887	85246887	+	594.666687	f1_balb.idr	TTS (NM_001037909)	TTS (NM_001037909)	24179.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90639926-2	chr3	90639426	90640426	+	594.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14376.0	NM_199422	381493.0	Mm.291525	NM_199422	ENSMUSG00000063767	S100a7a	AY465109|Gm1020|S100A7L1|S100A7f|S100a15|S100a15a|S100a17l1	S100 calcium binding protein A7A	protein-coding	6.0	0.0	4.0	0.0	1.5	2.0
Merged-chr2-35906628-3	chr2	35906128	35907128	+	594.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029774, intron 3 of 9)	intron (NM_029774, intron 3 of 9)	72996.0	NM_029774	74410.0	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94563068-2	chr16	94562570	94563570	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-7136.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34082379-2	chr11	34081879	34082879	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 15 of 20)	intron (NM_010696, intron 15 of 20)	16175.0	NR_155520	76874.0	Mm.437529	NR_155520		4930469K13Rik	-	RIKEN cDNA 4930469K13 gene	ncRNA	3.5	4.5	0.0	2.5	2.0	1.5
Merged-chr16-16856306-2	chr16	16855806	16856806	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A|LTR|ERVK	7679.0	NM_001190325	16136.0	Mm.184441	NM_001190325	ENSMUSG00000075370	Igll1	BB139905|Igl-5|Igll|Lambda5	immunoglobulin lambda-like polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25487568-2	chr9	25487068	25488068	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	5971.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-88551433-2	chr9	88550933	88551933	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163061, intron 1 of 4)	B3|SINE|B2	3413.0	NM_001142943	71640.0	Mm.259988	NM_001142943	ENSMUSG00000032425	Zfp949	4930422I07Rik|Nczf	zinc finger protein 949	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99255458-2	chr7	99254958	99255958	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11760.0	NR_103487	381967.0	Mm.261763	NR_103487	ENSMUSG00000097015	Gm26705	-	predicted gene, 26705	ncRNA	4.0	0.0	0.0	0.0	1.0	0.0
Merged-chr6-121229381-2	chr6	121228881	121229881	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16525.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8998205-1	chr3	8997705	8998705	+	594.5	f1_balb.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	5999.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	12.5	40.5	28.5	15.0	35.5	19.5
Merged-chr7-29038730-1	chr7	29038230	29039230	+	594.5	f1_balb.idr	intron (NM_009109, intron 87 of 105)	intron (NM_009109, intron 87 of 105)	44964.0	NR_035489	100316710.0		NR_035489	ENSMUSG00000089219	Mir1963	mir-1963|mmu-mir-1963	microRNA 1963	ncRNA	2.5	0.0	0.0	0.0	2.0	0.0
Merged-chr5-134748373-2	chr5	134747873	134748873	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1050.0	NM_007925	13717.0	Mm.275320	NM_007925	ENSMUSG00000029675	Eln	AI385707|AI480567|E030024M20Rik	elastin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47582865-2	chr9	47582365	47583365	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	52513.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	3.5	11.5	7.0	5.5	14.5	5.5
Merged-chr11-51608330-2	chr11	51607830	51608830	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1449.0	NM_010448	15384.0	Mm.256875	NM_010448	ENSMUSG00000020358	Hnrnpab	3010025C11Rik|CBF-A|Cgbfa|Hnrpab	heterogeneous nuclear ribonucleoprotein A/B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73424107-2	chr13	73423607	73424607	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43276.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129495184-2	chr4	129494684	129495684	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3994.0	NM_001085491	68233.0	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32953043-2	chr19	32952543	32953543	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	195466.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-73866131-2	chr10	73865631	73866631	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142748, intron 1 of 25)	intron (NM_001142748, intron 1 of 25)	44264.0	NM_001142735	11994.0	Mm.338933	NM_023115	ENSMUSG00000052613	Pcdh15	BB078305|Gm9815|Ush1f|av|nmf19|roda	protocadherin 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50929262-2	chr14	50928761	50929761	+	594.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001310505, exon 4 of 7)	exon (NM_001310505, exon 4 of 7)	1588.0	NM_001310506	219024.0	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161|Pip4p1	transmembrane protein 55b	protein-coding	5.0	9.5	15.5	14.5	36.0	18.0
Merged-chr4-133154226-1	chr4	133153726	133154726	+	594.5	f0_balb.idr	intron (NM_153423, intron 1 of 8)	CT-rich|Low_complexity|Low_complexity	23593.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	31.5	112.5	77.0	20.5	37.0	68.0
Merged-chr11-98338569-2	chr11	98338069	98339069	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-8924.0	NM_010895	18013.0	Mm.4814	NM_010895	ENSMUSG00000038255	Neurod2	Ndrf|bHLHa1	neurogenic differentiation 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107748488-2	chr13	107747991	107748991	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	61094.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr19-9956809-2	chr19	9956309	9957309	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23791.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75507341-2	chr10	75506841	75507841	+	594.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347201, exon 6 of 6)	3' UTR (NM_001347201, exon 6 of 6)	10040.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117696741-2	chr11	117696241	117697241	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 1 of 21)	RMER13B|LTR|ERVK	42452.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-85410892-2	chr9	85410414	85411414	+	594.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	(CAG)n|Simple_repeat|Simple_repeat	-83764.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0.0	2.0	0.0	0.5	0.0	1.5
Merged-chr15-101986642-2	chr15	101986142	101987142	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	17700.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167828484-2	chr2	167827984	167828984	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103843.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-101616415-2	chr14	101615915	101616915	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7224.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-90682255-2	chr15	90681707	90682707	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2819.0	NM_001357979	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	13.0	0.0	5.5	2.5	0.0	0.0
Merged-chr4-33115488-2	chr4	33114988	33115988	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17068.0	NM_008075	14408.0	Mm.14116	NM_008075	ENSMUSG00000028280	Gabrr1	GABA-C	gamma-aminobutyric acid (GABA) C receptor, subunit rho 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147227489-2	chr5	147226989	147227989	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38793.0	NM_008178	14842.0	Mm.4797	NM_008178	ENSMUSG00000053129	Gsx1	Gsh-1|Gsh1	GS homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-29969173-3	chr14	29968658	29969658	+	594.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019979, intron 1 of 4)	B1_Mur2|SINE|Alu	778.0	NM_019979	80795.0	Mm.104491	NM_019979	ENSMUSG00000042682	Selenok	1110001C03Rik|AA673253|HSPC030|Hsp30|Selk	selenoprotein K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132342934-2	chr1	132342434	132343434	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25014.0	NM_001311108	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76354976-2	chr16	76354476	76355476	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	Lx9|LINE|L1	18073.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4067267-2	chr19	4066767	4067767	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7820.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-14469187-2	chr19	14468687	14469687	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302951, intron 8 of 19)	B4|SINE|B4	-30681.0	NR_003027	19862.0		NR_003027	ENSMUSG00000095132	Rnu6	-	U6 small nuclear RNA	snRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-77918416-2	chr2	77917916	77918916	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030560, intron 12 of 20)	intron (NM_030560, intron 12 of 20)	27940.0	NM_001290740	80744.0	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-53122073-2	chr2	53121573	53122573	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 21 of 26)	intron (NM_172409, intron 21 of 26)	69114.0	NM_018785	56194.0	Mm.257474	NM_018785	ENSMUSG00000061136	Prpf40a	2810012K09Rik|FBP-11|FBP11|Fnbp11|Fnbp3	pre-mRNA processing factor 40A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-4385932-2	chr10	4385432	4386432	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033466, intron 1 of 2)	intron (NM_001033466, intron 1 of 2)	1543.0	NM_001359811	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95284515-2	chr3	95284015	95285015	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133858, intron 1 of 9)	intron (NM_133858, intron 1 of 9)	1580.0	NM_199475	75007.0	Mm.279287	NM_133858	ENSMUSG00000038712	Mindy1	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|Fam63a|cI-40|mKIAA1390|ni	MINDY lysine 48 deubiquitinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-127327972-2	chr4	127327472	127328472	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160012, intron 1 of 1)	intron (NM_001160012, intron 1 of 1)	1153.0	NM_008126	14620.0	Mm.90003	NM_008126	ENSMUSG00000042367	Gjb3	Cnx31|Cx31|D4Wsu144e|Gjb-3	gap junction protein, beta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108855073-2	chr3	108854609	108855609	+	594.5	f0_balb.idr|f1_c57bl6.idr	3' UTR (NM_177091, exon 13 of 13)	3' UTR (NM_177091, exon 13 of 13)	-14607.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	29.5	101.5	61.5	9.0	30.5	16.0
Merged-chr16-94658617-2	chr16	94658117	94659117	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	(TTTTG)n|Simple_repeat|Simple_repeat	47198.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-57978402-2	chr1	57977902	57978902	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-6938.0	NM_001177867	68549.0	Mm.32800	NM_199007	ENSMUSG00000026039	Sgo2a	1110007N04Rik|4932411A20Rik|5730576N04Rik|AU018846|AV008062|D1Ertd8e|Sgol2|Sgol2a|Tripin	shugoshin 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21651171-2	chr16	21650671	21651671	+	594.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001001881, exon 2 of 2)	3' UTR (NM_001001881, exon 2 of 2)	43494.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104640862-2	chr3	104640362	104641362	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009196, intron 1 of 4)	intron (NM_009196, intron 1 of 4)	2198.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57260533-2	chr9	57260033	57261033	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028820, intron 1 of 2)	intron (NM_028820, intron 1 of 2)	2066.0	NM_028820	74211.0	Mm.428905	NM_028820	ENSMUSG00000032300	1700017B05Rik	AA682102|D9Ertd278e	RIKEN cDNA 1700017B05 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127745671-2	chr10	127745171	127746171	+	594.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_198035, exon 2 of 2)	3' UTR (NM_198035, exon 2 of 2)	6127.0	NM_007412	11536.0	Mm.2857	NM_007412	ENSMUSG00000058396	Gpr182	AM-R|Admr|G10-D|Gpcr17|Gpcr22|MB10|NOW	G protein-coupled receptor 182	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116097430-2	chr3	116096931	116097931	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	32257.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	19.5	8.0	9.0	20.5	14.0	8.5
Merged-chr2-145431724-2	chr2	145431224	145432224	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053195, intron 2 of 16)	intron (NM_053195, intron 2 of 16)	123258.0	NM_001037929	627302.0	Mm.445953	NM_001037929		Gm14092	-	predicted gene 14092	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-6265906-2	chr7	6265406	6266406	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177416, intron 5 of 11)	B3|SINE|B2	9984.0	NM_001177417	627821.0	Mm.99441	NM_001177416	ENSMUSG00000053367	Epp13	EG627821|Eddm13|Gm6792	epididymal protein 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9615762-2	chr3	9615262	9616262	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5677.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66503967-2	chr9	66503467	66504467	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145617, intron 76 of 77)	intron (NM_145617, intron 76 of 77)	10626.0	NM_175206	74165.0	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25487058-2	chr9	25486558	25487558	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	5461.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100419527-2	chr15	100419027	100420027	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008732, intron 1 of 16)	intron (NM_008732, intron 1 of 16)	3528.0	NM_001146161	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	3.5	1.5	3.0	1.0	1.5	0.0
Merged-chr14-121410364-2	chr14	121409864	121410864	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31134.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	6.5	10.5	13.0	13.0	10.5	11.5
Merged-chr9-116082896-2	chr9	116082396	116083396	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92467.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	2.5	2.0	3.0	3.0	0.0	2.5
Merged-chr10-26891525-2	chr10	26891025	26892025	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 12 of 14)	intron (NM_176837, intron 12 of 14)	119013.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109420792-2	chr11	109420292	109421292	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5154.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	3.0	9.0	17.0	5.0	21.5	7.0
Merged-chr2-34965465-2	chr2	34964965	34965965	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3693.0	NM_001326601	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90996737-2	chr16	90996237	90997237	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045515, intron 2 of 32)	PB1D9|SINE|Alu	14358.0	NM_001045515	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102286995-2	chr12	102286495	102287495	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	3354.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr5-19194085-2	chr5	19193585	19194585	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32470.0	NR_102341	70832.0	Mm.398993	NR_102341	ENSMUSG00000097626	4921504A21Rik	-	RIKEN cDNA 4921504A21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30244392-2	chr14	30243892	30244892	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 3 of 46)	intron (NM_001083616, intron 3 of 46)	109094.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112757051-3	chr13	112756549	112757549	+	594.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43728.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-60949257-2	chr19	60948776	60949776	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	59527.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	3.5	2.0	1.0	3.5	1.0	2.5
Merged-chr19-16142193-2	chr19	16141693	16142693	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	9362.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-50138644-1	chr18	50138144	50139144	+	594.5	f0_balb.idr	intron (NM_008292, intron 2 of 23)	L1MB1|LINE|L1	10443.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	18.0	3.5	7.5	2.0	1.5	1.0
Merged-chr3-67558486-2	chr3	67557986	67558986	+	594.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-24282.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	4.5	2.5	7.5	0.0	0.0	1.0
Merged-chr9-115711155-3	chr9	115710658	115711658	+	594.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-198297.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	1.5	6.0	3.0	2.0	0.0	5.0
Merged-chr15-12206218-3	chr15	12205727	12206727	+	594.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356498, intron 1 of 15)	B1_Mur2|SINE|Alu	1199.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-56751718-3	chr10	56751219	56752219	+	594.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	319738.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-81931886-2	chr3	81931386	81932386	+	594.3000490000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177662)	promoter-TSS (NM_177662)	-715.0	NM_177662	229445.0	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|AI118514	cathepsin O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43546219-2	chr4	43545681	43546681	+	594.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011602, intron 20 of 56)	intron (NM_011602, intron 20 of 56)	16402.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	4.0	4.0	0.0	2.0	0.0	1.0
Merged-chr17-75558756-2	chr17	75558256	75559256	+	594.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-6810.0	NM_001357860	72722.0	Mm.24641	NM_133747	ENSMUSG00000002017	Fam98a	2810405J04Rik|AL024114	family with sequence similarity 98, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5933566-2	chr17	5933066	5934066	+	594.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-7714.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119042501-2	chr11	119041960	119042960	+	594.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-2901	-1547.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr6-116263693-2	chr6	116263193	116264193	+	594.200012	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001309446)	promoter-TSS (NM_001309446)	-526.0	NM_001309446	67492.0	Mm.272772	NM_001081317	ENSMUSG00000042213	Zfand4	Anubl1	zinc finger, AN1-type domain 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41736539-2	chr10	41736039	41737039	+	594.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026643, intron 5 of 10)	MTEb-int|LTR|ERVL-MaLR	-10182.0	NR_152819	100196896.0	Mm.444764	NR_152819		BC048559	-	cDNA sequence BC048559	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167888630-2	chr2	167888130	167889130	+	594.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43697.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-83519621-2	chr12	83519121	83520121	+	594.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030246)	promoter-TSS (NM_030246)	-845.0	NM_030246	73828.0	Mm.38238	NM_030246	ENSMUSG00000021222	Dcaf4	1110018E21Rik|Wdr21	DDB1 and CUL4 associated factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32251992-2	chr16	32251492	32252492	+	594.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001185162, exon 2 of 3)	exon (NM_001185162, exon 2 of 3)	4739.0	NM_026898	68980.0	Mm.159860	NM_026898	ENSMUSG00000022787	Wdr53	1500002B03Rik|AI848860	WD repeat domain 53	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-139370216-2	chr2	139369716	139370716	+	594.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR65|LTR|ERV1	-123697.0	NM_001356507	228677.0	Mm.100450	NM_175467	ENSMUSG00000039092	Sptlc3	C130053K05Rik	serine palmitoyltransferase, long chain base subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38425150-3	chr18	38424652	38425652	+	594.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	6245.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-130709649-1	chr7	130709149	130710149	+	594.0	f0_balb.idr	intron (NM_021314, intron 1 of 17)	intron (NM_021314, intron 1 of 17)	17093.0	NM_021314	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75712741-2	chr10	75712241	75713241	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172549, intron 26 of 36)	intron (NM_172549, intron 26 of 36)	51616.0	NM_172549	104248.0	Mm.257404	NM_172549	ENSMUSG00000020196	Cabin1	A330070M20Rik|Cain|Ppp3in	calcineurin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127178408-2	chr10	127177908	127178908	+	594.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177615, exon 4 of 17)	exon (NM_177615, exon 4 of 17)	2237.0	NM_177615	216441.0	Mm.248373	NM_177615	ENSMUSG00000040441	Slc26a10	C78409|D630010I07	solute carrier family 26, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71638312-1	chr8	71637812	71638812	+	594.0	f1_balb.idr	intron (NM_001029873, intron 34 of 41)	intron (NM_001029873, intron 34 of 41)	-7206.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	1.0	5.5	3.0	1.5	0.5	2.5
Merged-chr2-104581503-1	chr2	104581003	104582003	+	594.0	f1_c57bl6.idr	Intergenic	MamSINE1|SINE|tRNA	-8981.0	NM_177253	228410.0	Mm.259876	NM_145529	ENSMUSG00000027176	Cstf3	4732468G05Rik|C79532|CstF-77	cleavage stimulation factor, 3' pre-RNA, subunit 3	protein-coding	0.0	0.5	2.0	4.5	3.5	9.0
Merged-chr1-136612057-2	chr1	136611557	136612557	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12844.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-135598635-1	chr6	135598135	135599135	+	594.0	f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-60278.0	NR_126088	75024.0	Mm.399147	NR_126088	ENSMUSG00000107396	4930425L21Rik	4930473P14Rik	RIKEN cDNA 4930425L21 gene	ncRNA	1.0	0.0	0.0	0.0	0.0	1.0
Merged-chr10-20009412-2	chr10	20008912	20009912	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 2 of 29)	intron (NM_008580, intron 2 of 29)	74886.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-110369488-1	chr13	110368988	110369988	+	594.0	f1_balb.idr	Intergenic	Intergenic	-12316.0	NM_177713	238875.0	Mm.30533	NM_177713	ENSMUSG00000046006	Gapt	9830130M13Rik	Grb2-binding adaptor, transmembrane	protein-coding	0.0	0.0	0.0	1.5	0.0	0.0
Merged-chr17-25830716-2	chr17	25830216	25831216	+	594.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_037243)	TTS (NR_037243)	712.0	NR_037243	100526479.0		NR_037243	ENSMUSG00000093076	Mir3082	mir-3082|mmu-mir-3082	microRNA 3082	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134933563-2	chr5	134933063	134934063	+	594.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_024479, exon 3 of 6)	exon (NM_024479, exon 3 of 6)	1039.0	NM_001359537	79565.0	Mm.34235	NM_024479	ENSMUSG00000040557	Mettl27	AW492986|BC002286|Wbscr27	methyltransferase like 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125446958-1	chr6	125446458	125447458	+	594.0	f1_balb.idr	Intergenic	Intergenic	47802.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	47.0	80.5	43.5	15.5	43.5	42.5
Merged-chr12-85449506-2	chr12	85449006	85450006	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24384.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-77115763-2	chr8	77115263	77116263	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083906, intron 3 of 8)	intron (NM_001083906, intron 3 of 8)	213255.0	NM_001083906	110784.0	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34508226-2	chr18	34507726	34508726	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1403.0	NM_146084	225358.0	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr19-47066218-1	chr19	47065718	47066718	+	594.0	f1_c57bl6.idr	Intergenic	Intergenic	-1530.0	NM_177342	226182.0	Mm.301522	NM_177342	ENSMUSG00000025049	Taf5	6330528C20Rik|AV117817	TATA-box binding protein associated factor 5	protein-coding	5.5	0.0	5.0	6.5	0.0	5.0
Merged-chr19-3594692-1	chr19	3594192	3595192	+	594.0	f1_balb.idr	intron (NM_008513, intron 18 of 22)	intron (NM_008513, intron 18 of 22)	-18943.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	0.0	4.0	3.5	0.0	4.0	1.5
Merged-chr1-4874755-2	chr1	4874255	4875255	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159750, intron 2 of 9)	Lx7|LINE|L1	16427.0	NM_001159751	21399.0	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8706601-2	chr19	8706101	8707101	+	594.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008577)	TTS (NM_008577)	7296.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79141046-2	chr8	79140546	79141546	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 8 of 14)	intron (NM_001294279, intron 8 of 14)	107537.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76583673-2	chr11	76583118	76584118	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5879.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	1.0	20.5	5.5	1.5	3.5	2.5
Merged-chr14-27185467-2	chr14	27184967	27185967	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	MTE2a|LTR|ERVL-MaLR	41474.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-96697730-2	chr15	96697230	96698230	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355633, intron 3 of 14)	intron (NM_001355633, intron 3 of 14)	1998.0	NM_001355633	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87719386-2	chr16	87718886	87719886	+	594.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007520, exon 3 of 5)	exon (NM_007520, exon 3 of 5)	20432.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69885962-1	chr8	69885462	69886462	+	594.0	f1_c57bl6.idr	intron (NM_026818, intron 3 of 7)	intron (NM_026818, intron 3 of 7)	1430.0	NM_026818	68709.0	Mm.334584	NM_026818	ENSMUSG00000044006	Cilp2	1110031K21Rik|AA407300|CLIP-2	cartilage intermediate layer protein 2	protein-coding	6.0	0.0	0.5	3.0	0.0	0.5
Merged-chr17-88460476-1	chr17	88459976	88460976	+	594.0	f1_c57bl6.idr	intron (NM_001355742, intron 1 of 5)	intron (NM_001355742, intron 1 of 5)	19772.0	NM_001355742	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	5.0	0.0	11.0	5.0	0.0	7.0
Merged-chr9-89066992-1	chr9	89066492	89067492	+	594.0	f0_balb.idr	Intergenic	Intergenic	25843.0	NM_001170884	666747.0	Mm.425592	NM_001170884	ENSMUSG00000079162	Trim43b	EG666747|Gm8269	tripartite motif-containing 43B	protein-coding	0.0	0.0	0.0	2.5	17.0	4.0
Merged-chr11-102298643-1	chr11	102298143	102299143	+	594.0	f1_balb.idr	Intergenic	B1_Mus1|SINE|Alu	-2014.0	NM_001098837	217218.0	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr1-143996187-1	chr1	143995687	143996687	+	594.0	f0_balb.idr	Intergenic	Lx10|LINE|L1	7962.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132791410-1	chr1	132790910	132791910	+	594.0	f0_balb.idr	Intergenic	Lx3C|LINE|L1	-49613.0	NM_001160317	269116.0	Mm.326702	NM_182716	ENSMUSG00000026442	Nfasc	AA387016|D430023G06Rik|NF|mKIAA0756	neurofascin	protein-coding	7.5	0.0	1.5	1.0	3.0	1.5
Merged-chr7-127116380-2	chr7	127115880	127116880	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133686, intron 1 of 3)	MIRc|SINE|MIR	5649.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100187424-2	chr15	100186924	100187924	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172819, intron 18 of 32)	intron (NM_172819, intron 18 of 32)	612.0	NR_037311	100499528.0		NR_037311	ENSMUSG00000092752	Mir3473a	Mir3473|mir-3473a|mmu-mir-3473|mmu-mir-3473a	microRNA 3473a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34956286-2	chr18	34955786	34956786	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1935.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr3-51331710-2	chr3	51331210	51332210	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 1 of 9)	intron (NM_023502, intron 1 of 9)	8934.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45475888-2	chr17	45475388	45476388	+	594.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027649)	promoter-TSS (NM_027649)	-950.0	NM_001357831	71020.0	Mm.44257	NM_027649	ENSMUSG00000023935	Spats1	1700011H05Rik|4933400B06Rik|Ddip|Srsp1	spermatogenesis associated, serine-rich 1	protein-coding	0.0	1.0	0.0	0.0	5.0	1.0
Merged-chr12-105732083-1	chr12	105731583	105732583	+	594.0	f1_c57bl6.idr	intron (NM_030187, intron 5 of 17)	intron (NM_030187, intron 5 of 17)	26101.0	NM_030187	78801.0	Mm.36006	NM_030187	ENSMUSG00000041323	Ak7	4930502N02Rik|AK 7	adenylate kinase 7	protein-coding	0.0	0.0	1.0	0.0	3.0	0.0
Merged-chr10-80903957-2	chr10	80903457	80904457	+	594.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010722, exon 9 of 12)	exon (NM_010722, exon 9 of 12)	2455.0	NM_001347140	16907.0	Mm.7362	NM_010722	ENSMUSG00000062075	Lmnb2	-	lamin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-100485026-2	chr10	100484526	100485526	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033332, intron 1 of 12)	intron (NM_001033332, intron 1 of 12)	2321.0	NM_001033332	237500.0	Mm.296805	NM_001033332	ENSMUSG00000036676	Tmtc3	9130014E20Rik|B130008E12Rik|mSmile	transmembrane and tetratricopeptide repeat containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89877455-2	chr3	89876955	89877955	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 8 of 9)	intron (NM_010559, intron 8 of 9)	35741.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-21548365-2	chr15	21547865	21548865	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008420, intron 7 of 11)	Lx3C|LINE|L1	436913.0	NM_001008420	215654.0	Mm.300909	NM_001008420	ENSMUSG00000040452	Cdh12	Cdhb	cadherin 12	protein-coding	1.5	11.5	6.0	0.0	0.0	0.0
Merged-chr3-153570745-2	chr3	153570245	153571245	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 1 of 4)	MTD|LTR|ERVL-MaLR	154388.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40745515-2	chr19	40745015	40746015	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85745.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11495801-2	chr2	11495301	11496301	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	6289.0	NM_001177754	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24911001-2	chr16	24910501	24911501	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-148638.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84784517-2	chr2	84784017	84785017	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9088.0	NM_009776	12258.0	Mm.38888	NM_009776	ENSMUSG00000023224	Serping1	C1INH|C1nh	serine (or cysteine) peptidase inhibitor, clade G, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103421206-3	chr3	103420687	103421687	+	594.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	141894.0	NM_053170	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135317430-2	chr4	135316930	135317930	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35784.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41286611-2	chr4	41286111	41287111	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11476.0	NM_026872	68926.0	Mm.41864	NM_026872	ENSMUSG00000028433	Ubap2	1190005K07Rik|AA408600|AU045235|UBAP-2|mKIAA1491	ubiquitin-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-65365079-2	chr16	65364579	65365579	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-155550.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145745656-1	chr6	145745156	145746156	+	594.0	f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-62727.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	2.5	9.0	3.5	3.5	5.5	7.5
Merged-chr11-59204542-2	chr11	59204042	59205042	+	594.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001302334, exon 3 of 4)	exon (NM_001302334, exon 3 of 4)	2056.0	NM_001302336	67212.0	Mm.282694	NM_026035	ENSMUSG00000036860	Mrpl55	2810038N09Rik|L55mt|MRP-L55	mitochondrial ribosomal protein L55	protein-coding	1.0	16.5	3.0	3.0	0.0	2.5
Merged-chr19-42091773-1	chr19	42091273	42092273	+	594.0	f1_c57bl6.idr	intron (NM_145501, intron 1 of 8)	intron (NM_145501, intron 1 of 8)	1338.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	132.5	197.0	138.5	135.0	195.5	137.0
Merged-chr17-84642045-1	chr17	84641545	84642545	+	594.0	f1_balb.idr	intron (NM_172256, intron 5 of 12)	B3|SINE|B2	15546.0	NM_172256	213575.0	Mm.246119	NM_172256	ENSMUSG00000024253	Dync2li1	4933404O11Rik|CGI-60|D2lic|LIC3|mD2LIC	dynein cytoplasmic 2 light intermediate chain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-105054998-1	chr13	105054498	105055498	+	594.0	f0_balb.idr	promoter-TSS (NM_029879)	promoter-TSS (NM_029879)	-68.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24741607-2	chr17	24741107	24742107	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013759, intron 3 of 4)	B1_Mus2|SINE|Alu	5014.0	NM_001346668	27361.0	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	28.0	30.0	17.5	14.5	33.0	24.0
Merged-chr1-136099792-2	chr1	136099292	136100292	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081023, intron 26 of 43)	intron (NM_001081023, intron 26 of 43)	31391.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147078686-2	chr5	147078186	147079186	+	594.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009087, exon 2 of 2)	exon (NM_009087, exon 2 of 2)	1340.0	NM_009087	20018.0	Mm.317557	NM_009087	ENSMUSG00000029642	Polr1d	1110003G10Rik|AC19|RPA16|Rpo1-3	polymerase (RNA) I polypeptide D	protein-coding	8.0	8.5	5.5	6.0	21.0	20.0
Merged-chr8-71283834-2	chr8	71283334	71284334	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 1 of 39)	ID_B1|SINE|B4	11120.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	4.5	1.5	17.0	11.5	11.0	5.0
Merged-chr7-44300136-1	chr7	44299636	44300636	+	594.0	f0_c57.idr	Intergenic	Intergenic	6823.0	NM_009131	20256.0	Mm.20428	NM_009131	ENSMUSG00000004473	Clec11a	AW457320|Clecsf3|Scgf	C-type lectin domain family 11, member a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16065517-2	chr19	16065017	16066017	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-67314.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-74209164-2	chr13	74208664	74209664	+	594.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177333)	promoter-TSS (NM_177333)	-464.0	NM_177333	211446.0	Mm.261859	NM_177333	ENSMUSG00000034152	Exoc3	2810050O03Rik|E430013E20Rik|Sec6|Sec6l1	exocyst complex component 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125532628-1	chr8	125532128	125533128	+	594.0	f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	37235.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	2.0	3.5	1.5	17.0	0.0	4.0
Merged-chr4-97753144-2	chr4	97752644	97753644	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-24482.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84920021-1	chr8	84919521	84920521	+	594.0	f1_balb.idr	intron (NM_019945, intron 17 of 25)	ID_B1|SINE|B4	6686.0	NR_103491	100503676.0	Mm.437155	NR_103491	ENSMUSG00000003812	Gm38426	-	predicted gene, 38426	ncRNA	2.0	0.0	1.5	3.0	3.5	0.0
Merged-chr5-135919014-2	chr5	135918514	135919514	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018871, intron 1 of 1)	intron (NM_018871, intron 1 of 1)	15627.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118898995-2	chr9	118898495	118899495	+	594.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133721, exon 28 of 28)	3' UTR (NM_133721, exon 28 of 28)	-27541.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26743948-1	chr2	26743448	26744448	+	594.0	f1_balb.idr	Intergenic	L1_Mus1|LINE|L1	12228.0	NM_001359164	105244099.0		NM_001359164		Gm39773	LCN16	predicted gene, 39773	protein-coding	8.0	8.0	6.0	9.5	9.0	11.5
Merged-chr15-74895635-2	chr15	74895135	74896135	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13931.0	NM_025929	67038.0	Mm.154566	NM_025929	ENSMUSG00000063522	2010109I03Rik	Ly6m	RIKEN cDNA 2010109I03 gene	protein-coding	0.5	0.0	0.5	0.0	2.0	3.0
Merged-chr13-59556416-2	chr13	59555916	59556916	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048008, intron 1 of 17)	intron (NM_001048008, intron 1 of 17)	506.0	NM_001284219	67269.0	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	0.0	0.0	1.5	1.5	1.0	2.0
Merged-chr1-24686955-1	chr1	24686455	24687455	+	594.0	f1_balb.idr	intron (NM_026719, intron 2 of 15)	intron (NM_026719, intron 2 of 15)	8037.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	31.5	57.5	34.0	35.5	89.5	39.5
Merged-chr2-30495109-2	chr2	30494609	30495609	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20910.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-138989389-2	chr3	138988889	138989889	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286759, intron 4 of 14)	Lx7|LINE|L1	85812.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24731175-2	chr17	24730675	24731675	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163945, intron 3 of 9)	intron (NM_001163945, intron 3 of 9)	-1510.0	NM_025425	66211.0	Mm.46198	NM_025425	ENSMUSG00000002500	Rpl3l	1110057H16Rik	ribosomal protein L3-like	protein-coding	2.5	0.0	0.5	2.5	1.5	0.0
Merged-chr11-103406618-1	chr11	103406118	103407118	+	594.0	f1_balb.idr	intron (NM_183034, intron 1 of 11)	intron (NM_183034, intron 1 of 11)	6046.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	10.0	30.5	24.0	4.0	21.5	12.5
Merged-chr10-10476373-2	chr10	10475873	10476873	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4059.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-74001307-1	chr13	74000807	74001807	+	594.0	f0_balb.idr	Intergenic	Intergenic	-8112.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155517038-2	chr2	155516538	155517538	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1005.0	NM_019811	60525.0	Mm.255026	NM_019811	ENSMUSG00000027605	Acss2	1110017C11Rik|ACAS|Acas1|Acas2|AceCS1|Acs1	acyl-CoA synthetase short-chain family member 2	protein-coding	0.0	1.0	5.5	0.0	1.0	0.0
Merged-chr13-94177338-2	chr13	94176838	94177838	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 3 of 3)	intron (NM_172589, intron 3 of 3)	107943.0	NM_029153	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153807657-1	chr1	153807157	153808157	+	594.0	f0_balb.idr	intron (NM_001243223, intron 11 of 20)	intron (NM_001243223, intron 11 of 20)	36484.0	NM_001243223	240816.0	Mm.329340	NM_001243223	ENSMUSG00000042641	Rgsl1	4930415K13Rik|Gm202|Rgsl2	regulator of G-protein signaling like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52924060-1	chr3	52923560	52924560	+	594.0	f0_balb.idr	intron (NR_040555, intron 2 of 4)	intron (NR_040555, intron 2 of 4)	3606.0	NR_040555	622124.0	Mm.389434	NR_040555	ENSMUSG00000104401	Gm20750	-	predicted gene, 20750	ncRNA	2.5	0.0	1.0	1.5	0.0	2.0
Merged-chr12-35288300-1	chr12	35287800	35288800	+	594.0	f0_balb.idr	Intergenic	L1MD|LINE|L1	-93403.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	2.5	3.0	11.0	5.0	24.0	3.5
Merged-chr16-17460467-2	chr16	17459967	17460967	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277231, intron 1 of 1)	B3|SINE|B2	8482.0	NM_007764	12929.0	Mm.21048	NM_007764	ENSMUSG00000006134	Crkl	1110025F07Rik|AA589403|AI325100|Crkol	v-crk avian sarcoma virus CT10 oncogene homolog-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74841891-1	chr11	74841391	74842391	+	594.0	f1_balb.idr	intron (NM_010813, intron 4 of 5)	URR1A|DNA|hAT-Charlie	10967.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	2.5	5.0	3.5	0.0	7.0	5.5
Merged-chr18-88177336-2	chr18	88176836	88177836	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	716871.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32274429-2	chr19	32273929	32274929	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168525, intron 2 of 9)	intron (NM_001168525, intron 2 of 9)	-63416.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-176248284-1	chr1	176247784	176248784	+	594.0	f0_balb.idr	intron (NM_001357846, intron 1 of 8)	intron (NM_001357846, intron 1 of 8)	27028.0	NM_001357846	319455.0	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding	4.0	0.0	0.0	0.5	6.5	0.5
Merged-chr8-38659799-1	chr8	38659299	38660299	+	594.0	f1_c57bl6.idr	intron (NM_145841, intron 1 of 7)	intron (NM_145841, intron 1 of 7)	1709.0	NM_145841	244431.0	Mm.210388	NM_145841	ENSMUSG00000039539	Sgcz	C230085N17Rik	sarcoglycan zeta	protein-coding	2.0	0.0	4.0	0.0	7.0	4.0
Merged-chr6-119446770-2	chr6	119446270	119447270	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009525, intron 2 of 4)	B1_Mur2|SINE|Alu	2616.0	NM_001271757	22419.0	Mm.321818	NM_009525	ENSMUSG00000030170	Wnt5b	AW545702|Wnt-5b	wingless-type MMTV integration site family, member 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-28366043-2	chr19	28365543	28366543	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175459, intron 4 of 10)	intron (NM_175459, intron 4 of 10)	-312181.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165339870-2	chr2	165339370	165340370	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-13391.0	NM_207706	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45963540-2	chr9	45963040	45964040	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8291.0	NM_172257	214597.0	Mm.379345	NM_172257	ENSMUSG00000034908	Sidt2	B930096O19|BC023957|CGI-40	SID1 transmembrane family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-115856491-2	chr4	115855991	115856991	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285487, intron 4 of 14)	intron (NM_001285487, intron 4 of 14)	17293.0	NM_001355174	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32231320-1	chr11	32230820	32231820	+	594.0	f0_balb.idr	TTS (NR_104306)	TTS (NR_104306)	4815.0	NM_010822	268395.0	Mm.263161	NM_010822	ENSMUSG00000020287	Mpg	9830006D05|AI326268|APNG|Aag|Mid1	N-methylpurine-DNA glycosylase	protein-coding	0.5	2.0	0.0	0.0	2.0	1.5
Merged-chr18-35919001-2	chr18	35918501	35919501	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45829.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-39602187-1	chr8	39601687	39602687	+	594.0	f1_balb.idr	intron (NM_001113326, intron 8 of 9)	intron (NM_001113326, intron 8 of 9)	40491.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	14.5	18.5	7.5	13.0	4.0	7.0
Merged-chr16-3714118-2	chr16	3713618	3714618	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019453, intron 2 of 9)	intron (NM_019453, intron 2 of 9)	4006.0	NM_001161790	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-42050623-2	chr13	42050123	42051123	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1398.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84660700-1	chr8	84660200	84661200	+	594.0	f0_c57.idr	TTS (NM_010499)	TTS (NM_010499)	2152.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	5.5	49.0	39.0	20.5	58.5	42.0
Merged-chr18-89182222-2	chr18	89181722	89182722	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-15205.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120014669-2	chr9	120014169	120015169	+	593.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011724, exon 3 of 3)	3' UTR (NM_011724, exon 3 of 3)	8929.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79921134-2	chr10	79920634	79921634	+	593.833313	f1_balb.idr|f1_c57bl6.idr	exon (NM_053244, exon 4 of 5)	exon (NM_053244, exon 4 of 5)	4163.0	NM_053244	114229.0	Mm.191035	NM_053244	ENSMUSG00000035773	Kiss1r	Gpr54|KiSS-1|kiSS-1R	KISS1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106137714-2	chr8	106137214	106138214	+	593.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176838)	promoter-TSS (NM_176838)	-740.0	NM_176838	77411.0	Mm.183003	NM_176838	ENSMUSG00000084128	Esrp2	9530027K23Rik|Rbm35b	epithelial splicing regulatory protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-20821171-2	chr1	20820671	20821671	+	593.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008563)	promoter-TSS (NM_008563)	-859.0	NM_008563	17215.0	Mm.4502	NM_008563	ENSMUSG00000041859	Mcm3	AL033361|C80350|Mcmd|P1|P1-MCM3|p1.m	minichromosome maintenance complex component 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142709057-2	chr3	142708557	142709557	+	593.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_173763, intron 2 of 13)	intron (NM_173763, intron 2 of 13)	8009.0	NM_001293560	229905.0	Mm.289643	NM_173763	ENSMUSG00000040213	Kyat3	Ccbl2|KATIII|Kat3	kynurenine aminotransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112259590-3	chr13	112259032	112260032	+	593.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28919.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	15.0	6.0	4.5	1.5	17.5	7.0
Merged-chr1-127484898-2	chr1	127484433	127485433	+	593.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger17|DNA|TcMar-Tigger	193088.0	NM_028135	72160.0	Mm.281287	NM_028135	ENSMUSG00000026347	Tmem163	2610024A01Rik|A-cre|Act-Cre|SV31|Tg(ACTB-cre)2Mrt|actin-cre|cre<actin>	transmembrane protein 163	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55773215-2	chr19	55772785	55773785	+	593.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	31475.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	8.0	6.0	15.5	2.0	1.0	12.0
Merged-chr16-11298058-2	chr16	11297558	11298558	+	593.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15751.0	NM_011608	21935.0	Mm.12935	NM_011608	ENSMUSG00000022496	Tnfrsf17	BCM|BCMA|Tnfrsf13|Tnfrsf13a	tumor necrosis factor receptor superfamily, member 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95550639-2	chr10	95550139	95551139	+	593.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358996, intron 3 of 4)	intron (NM_001358996, intron 3 of 4)	8682.0	NR_037212	100526463.0		NR_037212	ENSMUSG00000092867	Mir3058	mir-3058|mmu-mir-3058	microRNA 3058	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96981030-2	chr11	96980530	96981530	+	593.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3342.0	NM_001080964	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43301138-2	chr13	43300638	43301638	+	593.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033399, intron 1 of 1)	intron (NM_001033399, intron 1 of 1)	3034.0	NM_001033399	328232.0	Mm.441399	NM_001033399	ENSMUSG00000051335	Gfod1	9630032O13|AI850995	glucose-fructose oxidoreductase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11662318-3	chr2	11661817	11662817	+	593.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008367, intron 1 of 7)	intron (NM_008367, intron 1 of 7)	19525.0	NM_008367	16184.0	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-181316846-3	chr1	181316344	181317344	+	593.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35784.0	NM_001160212	72978.0	Mm.338083	NM_028408	ENSMUSG00000026514	Cnih3	2900075G08Rik|CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56821298-3	chr18	56820792	56821792	+	593.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177115, intron 1 of 4)	intron (NM_177115, intron 1 of 4)	104256.0	NM_177115	320253.0	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76419418-3	chr11	76418934	76419934	+	593.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 21 of 21)	intron (NM_001346670, intron 21 of 21)	12291.0	NM_019818	56322.0	Mm.18803	NM_019818	ENSMUSG00000020843	Timm22	Tim22	translocase of inner mitochondrial membrane 22	protein-coding	1.0	3.0	2.5	11.5	0.0	0.0
Merged-chr12-112877154-2	chr12	112876654	112877654	+	593.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16238.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113844968-2	chr5	113844468	113845468	+	593.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011779, intron 10 of 10)	intron (NM_011779, intron 10 of 10)	-14467.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	2.0	0.0	0.0	0.0	1.0	0.0
Merged-chr19-47442502-2	chr19	47442002	47443002	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	MIRb|SINE|MIR	21909.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-6352073-2	chr8	6351573	6352573	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	-1246786.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr10-88678207-1	chr10	88677707	88678707	+	593.5	f0_balb.idr	intron (NM_011461, intron 4 of 5)	B1_Mur4|SINE|Alu	4816.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	22.0	20.5	16.5	15.0	52.5	22.0
Merged-chr2-157060358-2	chr2	157059858	157060858	+	593.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164663, exon 2 of 15)	exon (NM_001164663, exon 2 of 15)	18907.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152012465-2	chr4	152011965	152012965	+	593.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033352, exon 2 of 4)	exon (NM_001033352, exon 2 of 4)	3574.0	NM_001033352	242785.0	Mm.22306	NM_001033352	ENSMUSG00000073700	Klhl21	1810045K06Rik|D330008A20|mKIAA0469	kelch-like 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103495811-2	chr2	103495305	103496305	+	593.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-10652.0	NM_009804	12359.0	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	5.0	1.0	3.5	2.0	1.0	5.0
Merged-chr12-84747078-2	chr12	84746578	84747578	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26034.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77962520-2	chr18	77962020	77963020	+	593.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001195633, exon 11 of 44)	exon (NM_001195633, exon 11 of 44)	24053.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43475667-2	chr13	43475167	43476167	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019930, intron 1 of 13)	URR1B|DNA|hAT-Charlie	5306.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	3.0	1.5	1.5	2.5	1.5	1.5
Merged-chr16-97487192-2	chr16	97486692	97487692	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020622, intron 2 of 7)	intron (NM_020622, intron 2 of 7)	17744.0	NM_020622	52793.0	Mm.327932	NM_020622	ENSMUSG00000022938	Fam3b	2-21|9030624C24Rik|D16Jhu19e|ORF9|Pander	family with sequence similarity 3, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45756745-2	chr17	45756245	45757245	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	22239.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	0.0	0.0	0.0	0.0	6.0	5.0
Merged-chr13-31619125-2	chr13	31618625	31619625	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6691.0	NM_010225	14238.0	Mm.125548	NM_010225	ENSMUSG00000038402	Foxf2	FREAC2|Fkh20|LUN	forkhead box F2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-140443859-2	chr6	140443359	140444359	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144920, intron 3 of 30)	intron (NM_144920, intron 3 of 30)	19760.0	NM_144920	109135.0	Mm.247670	NM_144920	ENSMUSG00000030231	Plekha5	2810431N21Rik|AI428202|AK129423|AMH-Cre|Ayu21-9|Gt(pU21)9Imeg|Pepp2|Tg(AMH-cre)1Flor	pleckstrin homology domain containing, family A member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128978704-2	chr4	128978204	128979204	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14520.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4400051-2	chr19	4399551	4400551	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-2974.0	NM_001001984	225876.0	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr18-18425814-2	chr18	18425314	18426314	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-844824.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107710386-1	chr9	107709886	107710886	+	593.5	f0_balb.idr	promoter-TSS (NM_011349)	promoter-TSS (NM_011349)	89.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-22392907-2	chr18	22392407	22393407	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167777, intron 3 of 12)	intron (NM_001167777, intron 3 of 12)	47818.0	NM_001167777	211961.0	Mm.392310	NM_001167777	ENSMUSG00000045215	Asxl3	C230079D11Rik|D430002O22Rik|D930044O18Rik|Gm329|Gm945	additional sex combs like 3, transcriptional regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-23034746-2	chr2	23034246	23035246	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	Lx9|LINE|L1	5495.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73514343-2	chr2	73513843	73514843	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	MLT1H2|LTR|ERVL-MaLR	15144.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-111955842-2	chr11	111955342	111956342	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	755514.0	NR_024085	217294.0	Mm.297761	NM_146031	ENSMUSG00000041674	BC006965	-	cDNA sequence BC006965	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-38227777-2	chr3	38227277	38228277	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19658.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25264913-2	chr7	25264413	25265413	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2786.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76111278-2	chr16	76110778	76111778	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-11335.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-68494840-2	chr18	68494340	68495340	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65520.0	NM_001301372	17200.0	Mm.426053	NM_008560	ENSMUSG00000045569	Mc2r	ACTH-R|ACTHR|MC2-R	melanocortin 2 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163480462-2	chr2	163479962	163480962	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7833.0	NM_173397	228859.0	Mm.242917	NM_173397	ENSMUSG00000048486	Fitm2	AI414861|D930001I22Rik|Fit2	fat storage-inducing transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-94491718-2	chr3	94491218	94492218	+	593.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_110353, exon 12 of 12)	non-coding (NR_110353, exon 12 of 12)	7360.0	NR_151857	78784.0	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|ETR-1|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46109363-2	chr8	46108863	46109863	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207213, intron 2 of 17)	intron (NM_207213, intron 2 of 17)	14783.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61883473-2	chr8	61882973	61883973	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 1 of 21)	intron (NM_001293772, intron 1 of 21)	19217.0	NM_001081390	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144703637-2	chr2	144703137	144704137	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025314, intron 4 of 5)	intron (NM_025314, intron 4 of 5)	103684.0	NM_025314	66044.0	Mm.28109	NM_025314	ENSMUSG00000027430	Dtd1	0610006H08Rik|DTD|DUE-B|Hars2	D-tyrosyl-tRNA deacylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-28802618-2	chr6	28802118	28803118	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 16 of 23)	intron (NM_019776, intron 16 of 23)	29129.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28144158-2	chr17	28143658	28144658	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004366, intron 1 of 21)	intron (NM_001004366, intron 1 of 21)	1632.0	NM_001004366	268935.0	Mm.258491	NM_001004366	ENSMUSG00000038677	Scube3	CEGF3|D030038I21Rik	signal peptide, CUB domain, EGF-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142932970-2	chr5	142932470	142933470	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-26216.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30233925-2	chr7	30233425	30234425	+	593.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027259)	TTS (NM_027259)	-1728.0	NM_025548	66411.0	Mm.27947	NM_025548	ENSMUSG00000006095	Tbcb	2410007D12Rik|AU041393|CG22|CKAPI|Ckap1	tubulin folding cofactor B	protein-coding	0.0	0.0	1.5	1.5	3.0	6.0
Merged-chr11-120763090-2	chr11	120762590	120763590	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21114.0	NM_009053	19719.0	Mm.871	NM_009053	ENSMUSG00000025158	Rfng	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136158809-2	chr1	136158318	136159318	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 17 of 34)	B1_Mm|SINE|Alu	27428.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-28048119-2	chr3	28047619	28048619	+	593.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164056, exon 11 of 27)	exon (NM_001164056, exon 11 of 27)	63948.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-107049686-2	chr5	107049186	107050186	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85125.0	NM_001271566	12545.0	Mm.20842	NM_009863	ENSMUSG00000029283	Cdc7	AI597260|Cdc7l1|muCdc7	cell division cycle 7 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-144928908-2	chr4	144928408	144929408	+	593.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001172424)	TTS (NM_001172424)	35771.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-10159194-2	chr15	10158694	10159694	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-18044.0	NM_011169	19116.0	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95885142-3	chr15	95884671	95885671	+	593.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 2 of 19)	intron (NM_175344, intron 2 of 19)	-55099.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-54723600-2	chr3	54723100	54724100	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358017, intron 22 of 24)	intron (NM_001358017, intron 22 of 24)	11764.0	NM_027148	69639.0	Mm.29253	NM_027148	ENSMUSG00000027752	Exosc8	2310032N20Rik|CIP3|mKIAA4013	exosome component 8	protein-coding	3.0	10.5	6.0	2.5	12.5	3.0
Merged-chr5-43236632-2	chr5	43236132	43237132	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177379, intron 1 of 10)	intron (NM_001177379, intron 1 of 10)	-1278.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-88021280-2	chr9	88020780	88021780	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-290020.0	NM_023814	76365.0	Mm.158789	NM_023814	ENSMUSG00000032419	Tbx18	2810012F10Rik|2810404D13Rik	T-box18	protein-coding	0.0	3.0	0.0	0.0	0.0	0.0
Merged-chr19-45205950-2	chr19	45205451	45206451	+	593.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	29285.0	NM_010691	16814.0	Mm.116815	NM_010691	ENSMUSG00000025216	Lbx1	Lbx1h	ladybird homeobox 1	protein-coding	1.0	0.0	2.0	0.0	2.0	3.0
Merged-chr2-33872107-2	chr2	33871607	33872607	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 2 of 9)	RMER4B|LTR|ERVK	15839.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8315047-2	chr12	8314547	8315547	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021429, intron 1 of 6)	intron (NM_021429, intron 1 of 6)	1614.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21738349-2	chr19	21737849	21738849	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39991.0	NM_001033759	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147584085-2	chr5	147583585	147584585	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010228, intron 20 of 29)	intron (NM_010228, intron 20 of 29)	141903.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100640767-2	chr11	100640267	100641267	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177790, intron 1 of 7)	intron (NM_177790, intron 1 of 7)	9926.0	NM_177790	278304.0	Mm.274734	NM_177790	ENSMUSG00000014198	Zfp385c	A930006D11Rik|Znf385c	zinc finger protein 385C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99267730-3	chr10	99267244	99268244	+	593.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026268)	TTS (NM_026268)	4513.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138321667-2	chr1	138321167	138322167	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	47929.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84234811-2	chr15	84234311	84235311	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	B4A|SINE|B4	2768.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134638023-2	chr5	134637523	134638523	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033561, intron 1 of 6)	intron (NM_033561, intron 1 of 6)	1386.0	NM_001312867	22384.0	Mm.27955	NM_033561	ENSMUSG00000040731	Eif4h	AU018978|D5Ertd355e|E430026L18Rik|Ef4h|Wbscr1|Wscr1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-44203499-2	chr5	44202999	44203999	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173764, intron 3 of 13)	intron (NM_173764, intron 3 of 13)	23107.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-51812603-2	chr17	51812103	51813103	+	593.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163630)	promoter-TSS (NM_001163630)	-419.0	NM_001357636	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-131870048-2	chr4	131869548	131870548	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3591.0	NM_020587	57317.0	Mm.2478	NM_020587	ENSMUSG00000028911	Srsf4	5730499P16Rik|AW550192|MNCb-2616|SRp75|Sfrs4	serine/arginine-rich splicing factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92680734-2	chr16	92680234	92681234	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 4 of 6)	intron (NM_001111022, intron 4 of 6)	16595.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102606643-2	chr4	102606143	102607143	+	593.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001177980, exon 10 of 10)	3' UTR (NM_001177980, exon 10 of 10)	16800.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	2.0	3.0	4.0	3.0	10.5	5.0
Merged-chr8-72294855-2	chr8	72294355	72295355	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24207.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	38.5	80.5	91.5	66.5	137.0	69.5
Merged-chr5-31724637-2	chr5	31724137	31725137	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181281, intron 2 of 10)	RMER19B|LTR|ERVK	26587.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-38931965-2	chr19	38931465	38932465	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008234, intron 2 of 21)	intron (NM_008234, intron 2 of 21)	975.0	NM_008234	15201.0	Mm.57223	NM_008234	ENSMUSG00000025001	Hells	AI323785|E130115I21Rik|LSH|Lysh|PASG|YFK8	helicase, lymphoid specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103102072-2	chr3	103101572	103102572	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25484.0	NM_177857	329727.0	Mm.293641	NM_177857	ENSMUSG00000007379	Dennd2c	A930010I20Rik	DENN/MADD domain containing 2C	protein-coding	3.0	10.5	1.0	3.0	10.5	1.0
Merged-chr6-87555883-2	chr6	87555383	87556383	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22624.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-121159366-2	chr7	121158866	121159866	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139310, intron 27 of 28)	intron (NM_139310, intron 27 of 28)	75928.0	NM_139310	246190.0	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121529929-2	chr3	121529429	121530429	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145394, intron 2 of 14)	intron (NM_145394, intron 2 of 14)	2415.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-59037683-3	chr19	59037173	59038173	+	593.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 5 of 16)	intron (NM_001114312, intron 5 of 16)	38396.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80073946-2	chr7	80073446	80074446	+	593.375	f1_balb.idr|f1_c57bl6.idr	intron (NR_045695, intron 1 of 2)	intron (NR_045695, intron 1 of 2)	1311.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	18.0	11.0	8.5	9.0	23.5	12.0
Merged-chr5-65881244-4	chr5	65880711	65881711	+	593.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	17642.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125282156-2	chr5	125281656	125282656	+	593.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_016741, intron 11 of 12)	intron (NM_016741, intron 11 of 12)	58938.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145744702-3	chr2	145744193	145745193	+	593.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 3 of 3)	intron (NR_033220, intron 3 of 3)	-41423.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-125500496-1	chr10	125499996	125500996	+	593.333313	f1_c57bl6.idr	Intergenic	Intergenic	-171533.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.0	6.0	0.0	0.0	5.0	1.0
Merged-chr2-71655997-3	chr2	71655550	71656550	+	593.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-63367.0	NR_037979	381371.0	Mm.330284	NM_201366	ENSMUSG00000064263	Platr26	Gm1631	pluripotency associated transcript 26	ncRNA	7.0	0.5	4.0	3.0	0.0	8.5
Merged-chr8-46083908-2	chr8	46083408	46084408	+	593.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_207213, intron 4 of 17)	intron (NM_207213, intron 4 of 17)	40238.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55809377-1	chr1	55808877	55809877	+	593.333313	f0_c57.idr	Intergenic	Intergenic	-121864.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	23.5	36.5	66.5	29.5	30.5	20.0
Merged-chr6-32589357-2	chr6	32588857	32589857	+	593.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1165.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-74341234-4	chr13	74340749	74341749	+	593.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023281, intron 3 of 14)	intron (NM_023281, intron 3 of 14)	8991.0	NM_023281	66945.0	Mm.158231	NM_023281	ENSMUSG00000021577	Sdha	1500032O14Rik|2310034D06Rik|4921513A11|C81073|FP|SDH2|SDHF	succinate dehydrogenase complex, subunit A, flavoprotein (Fp)	protein-coding	13.0	11.0	8.0	9.5	12.0	4.5
Merged-chr13-52614381-2	chr13	52613881	52614881	+	593.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 3 of 13)	intron (NM_011518, intron 3 of 13)	17499.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128738154-2	chr2	128737645	128738645	+	593.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 3 of 18)	intron (NM_008587, intron 3 of 18)	39230.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-50297301-2	chr2	50296801	50297801	+	593.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348198)	promoter-TSS (NM_001348198)	491.0	NR_040362	100502624.0	Mm.382825	NR_040361	ENSMUSG00000085862	Gm13483	-	predicted gene 13483	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63782267-2	chr9	63781767	63782767	+	593.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24273.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146047931-3	chr3	146047471	146048471	+	593.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172864, intron 19 of 22)	intron (NM_172864, intron 19 of 22)	60065.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-113186185-2	chr7	113185685	113186685	+	593.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21280.0	NM_001243048	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-157086327-2	chr1	157085827	157086827	+	593.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22323.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	4.0	5.5	2.5	1.5	3.5	1.0
Merged-chr5-34368687-2	chr5	34368187	34369187	+	593.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1246.0	NM_001243123	231128.0	Mm.286885	NM_001030306	ENSMUSG00000037210	Fam193a	-	family with sequence similarity 193, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65660842-2	chr3	65660502	65661502	+	593.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1714.0	NR_106200	102465905.0		NR_106200	ENSMUSG00000098944	Mir8120	Gm27637|mmu-mir-8120	microRNA 8120	ncRNA	1.0	5.0	3.0	4.0	2.0	3.5
Merged-chr19-57375355-3	chr19	57374858	57375858	+	593.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145505, intron 5 of 16)	RLTR16B_MM|LTR|ERVK	14349.0	NM_145505	226252.0	Mm.358870	NM_145505	ENSMUSG00000033478	Fam160b1	AI450540|mKIAA1600	family with sequence similarity 160, member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4518197-2	chr2	4517697	4518697	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 7 of 23)	B4A|SINE|B4	-41557.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8214140-1	chr17	8213640	8214640	+	593.0	f0_balb.idr	Intergenic	Intergenic	-21903.0	NM_001190333	12458.0	Mm.8007	NM_009835	ENSMUSG00000040899	Ccr6	CC-CKR-6|CCR-6|Cmkbr6|KY411	chemokine (C-C motif) receptor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34726479-1	chr19	34725979	34726979	+	593.0	f0_balb.idr	intron (NM_172838, intron 1 of 6)	L1MB3|LINE|L1	20632.0	NM_172838	240638.0	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80946120-2	chr15	80945620	80946620	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2370.0	NM_009634	11564.0	Mm.38151	NM_009634	ENSMUSG00000022407	Adsl	Adl|Asl	adenylosuccinate lyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-43654586-1	chr16	43654086	43655086	+	593.0	f0_balb.idr	intron (NM_001146325, intron 3 of 3)	intron (NM_001146325, intron 3 of 3)	9598.0	NM_001146325	100043314.0	Mm.390896	NM_001146325	ENSMUSG00000071552	Tigit	Vstm3	T cell immunoreceptor with Ig and ITIM domains	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-89094014-2	chr11	89093514	89094514	+	593.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033266)	TTS (NM_001033266)	20173.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	16.0	36.5	57.5	12.0	23.5	19.5
Merged-chr16-33590714-2	chr16	33590214	33591214	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 5 of 11)	intron (NM_001083902, intron 5 of 11)	72119.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47320105-1	chr6	47319605	47320605	+	593.0	f0_balb.idr	Intergenic	URR1B|DNA|hAT-Charlie	75709.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-57065396-2	chr4	57064891	57065891	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355492, intron 14 of 24)	intron (NM_001355492, intron 14 of 24)	-75000.0	NM_001142965	230235.0	Mm.207654	NM_001142965	ENSMUSG00000045589	Frrs1l	6430704M03Rik	ferric-chelate reductase 1 like	protein-coding	2.0	6.0	6.5	0.0	0.5	0.0
Merged-chr15-99383666-2	chr15	99383166	99384166	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-9281.0	NM_026669	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27330285-2	chr7	27329785	27330785	+	593.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175641, exon 5 of 33)	exon (NM_175641, exon 5 of 33)	3363.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0.0	0.0	0.0	2.5	2.5	0.0
Merged-chr15-12424350-1	chr15	12423850	12424850	+	593.0	f0_balb.idr	intron (NM_001081064, intron 5 of 23)	intron (NM_001081064, intron 5 of 23)	102854.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-13654952-1	chr11	13654452	13655452	+	593.0	f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	524089.0	NR_131011	75280.0	Mm.108492	NR_131011	ENSMUSG00000085452	4930554G24Rik	-	RIKEN cDNA 4930554G24 gene	ncRNA	10.5	0.0	6.5	0.0	0.0	2.0
Merged-chr3-108718014-1	chr3	108717514	108718514	+	593.0	f0_balb.idr	intron (NM_029522, intron 1 of 14)	ORR1A3|LTR|ERVL-MaLR	4285.0	NM_029522	76123.0	Mm.226941	NM_029522	ENSMUSG00000027883	Gpsm2	6230410J09Rik|LGN|Pins	G-protein signalling modulator 2 (AGS3-like, C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-9173469-1	chr5	9172969	9173969	+	593.0	f1_balb.idr	Intergenic	Intergenic	-11693.0	NR_152861	23857.0	Mm.22480	NM_011806	ENSMUSG00000042508	Dmtf1	Dimp|Dmp1	cyclin D binding myb-like transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127578957-1	chr10	127578457	127579457	+	593.0	f1_balb.idr	intron (NM_008512, intron 20 of 88)	intron (NM_008512, intron 20 of 88)	42191.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0.0	6.0	2.5	5.0	4.5	0.0
Merged-chr17-26605109-1	chr17	26604609	26605609	+	593.0	f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	43597.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	3.5	7.5	16.5	7.5	31.5	21.0
Merged-chr10-78466069-2	chr10	78465569	78466569	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-1121.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81942666-2	chr13	81942166	81943166	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	159419.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0.0	4.0	3.0	5.0	11.0	6.5
Merged-chr17-84936531-1	chr17	84936031	84937031	+	593.0	f0_balb.idr	intron (NR_027929, intron 2 of 3)	intron (NR_027929, intron 2 of 3)	-20210.0	NM_001159497	19043.0	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93344750-1	chr2	93344250	93345250	+	593.0	f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-10263.0	NM_183180	241556.0	Mm.274159	NM_183180	ENSMUSG00000027217	Tspan18	2610042G18Rik|6720430O15|BB226562	tetraspanin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-94252171-1	chr2	94251671	94252671	+	593.0	f0_balb.idr	Intergenic	Intergenic	9228.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35030151-1	chr12	35029651	35030651	+	593.0	f0_balb.idr	Intergenic	MER63C|DNA|hAT-Blackjack	-17038.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	2.5	8.0	3.5	10.0	13.5	5.0
Merged-chr6-54287256-1	chr6	54286756	54287756	+	593.0	f1_balb.idr	intron (NM_001163640, intron 8 of 12)	intron (NM_001163640, intron 8 of 12)	14434.0	NM_023543	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	5.0	0.0	1.5	0.0	1.0	0.5
Merged-chr1-105780056-2	chr1	105779556	105780556	+	593.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009399)	promoter-TSS (NM_009399)	-667.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133520895-1	chr4	133520395	133521395	+	593.0	f1_balb.idr	intron (NM_001083916, intron 1 of 3)	intron (NM_001083916, intron 1 of 3)	1932.0	NM_133707	69073.0	Mm.299081	NM_133707	ENSMUSG00000037600	Kdf1	1810019J16Rik	keratinocyte differentiation factor 1	protein-coding	5.5	1.5	0.5	0.0	11.0	0.0
Merged-chr8-11003331-1	chr8	11002831	11003831	+	593.0	f0_balb.idr	intron (NM_001081212, intron 1 of 1)	intron (NM_001081212, intron 1 of 1)	-4519.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67611498-1	chr18	67610998	67611998	+	593.0	f1_balb.idr	Intergenic	Intergenic	29857.0	NM_001357523	225659.0	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	5.5	9.0	6.0	5.5	6.0	6.0
Merged-chr15-55543754-2	chr15	55543254	55544254	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026759, intron 3 of 6)	B3|SINE|B2	13558.0	NM_026759	68537.0	Mm.236795	NM_026759	ENSMUSG00000022370	Mrpl13	1110002D09Rik	mitochondrial ribosomal protein L13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-124706645-1	chr10	124706145	124707145	+	593.0	f1_c57bl6.idr	Intergenic	Intergenic	237571.0	NR_028310	75030.0	Mm.159403	NR_028310	ENSMUSG00000112364	4930503E24Rik	-	eukaryotic translation initiation factor 3, subunit I pseudogene	pseudo	8.5	4.0	2.0	4.5	0.0	5.5
Merged-chr16-44350185-2	chr16	44349685	44350685	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144550, intron 1 of 17)	MIR|SINE|MIR	2784.0	NM_144550	212514.0	Mm.24035	NM_144550	ENSMUSG00000043065	Spice1	Ccdc52|D16Ertd480e	spindle and centriole associated protein 1	protein-coding	5.0	3.5	5.0	5.0	4.5	5.0
Merged-chr1-36304461-2	chr1	36303961	36304961	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3272.0	NM_001172206	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102852236-1	chr2	102851736	102852736	+	593.0	f0_balb.idr	intron (NM_009851, intron 5 of 18)	intron (NM_009851, intron 5 of 18)	49429.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	4.0	3.5	2.5	12.0	9.0	7.5
Merged-chr7-128524780-2	chr7	128524280	128525280	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013863, intron 1 of 3)	intron (NM_013863, intron 1 of 3)	1197.0	NM_013863	29810.0	Mm.84073	NM_013863	ENSMUSG00000030847	Bag3	AA407278|Bis|mg638	BCL2-associated athanogene 3	protein-coding	35.0	54.5	25.0	11.0	46.5	34.5
Merged-chr7-141634659-2	chr7	141634159	141635159	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330001, intron 32 of 33)	intron (NM_001330001, intron 32 of 33)	13958.0	NR_106030	102466798.0		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167718960-2	chr2	167718460	167719460	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27783.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123117474-2	chr8	123116962	123117962	+	593.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170684)	promoter-TSS (NM_170684)	88.0	NM_170684	102278.0	Mm.36434	NM_170684	ENSMUSG00000034796	Cpne7	AW047065	copine VII	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121394934-1	chr10	121394434	121395434	+	593.0	f1_balb.idr	intron (NM_029364, intron 13 of 13)	intron (NM_029364, intron 13 of 13)	29844.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0.0	3.5	2.0	1.5	3.5	2.5
Merged-chr11-118293184-2	chr11	118292684	118293684	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2940.0	NM_001033528	72344.0	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122285209-1	chr5	122284709	122285709	+	593.0	f0_c57.idr	intron (NM_177242, intron 1 of 5)	CpG	811.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132104693-2	chr2	132104193	132105193	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	40415.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-15758475-2	chr13	15757975	15758975	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44155.0	NR_045507	71071.0	Mm.380845	NR_045507	ENSMUSG00000113960	4933412O06Rik	-	RIKEN cDNA 4933412O06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99474872-2	chr7	99474372	99475372	+	593.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028145)	TTS (NM_028145)	4835.0	NR_002173	449631.0	Mm.236868	NR_002173	ENSMUSG00000064966	Snord15b	Gm5775|Rnu15-b|Rnu15b|U15B	small nucleolar RNA, C/D box 14B	snoRNA	2.0	0.5	3.5	2.5	0.0	0.0
Merged-chr2-130781290-1	chr2	130780790	130781790	+	593.0	f0_balb.idr	intron (NM_029432, intron 12 of 36)	MLTR12|LTR|ERV1	22811.0	NR_024097	100043766.0	Mm.447040	NR_024097		Gm14057	-	Ppp1r14c pseudogene	pseudo	7.5	5.5	3.0	7.0	2.5	20.5
Merged-chr3-100183793-1	chr3	100183293	100184293	+	593.0	f1_balb.idr	intron (NR_104341, intron 6 of 13)	B2_Mm1t|SINE|B2	21330.0	NR_104341	14547.0	Mm.279228	NM_010269	ENSMUSG00000027865	Gdap2	C77050|D3Ertd801e	ganglioside-induced differentiation-associated-protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-7819533-2	chr14	7819033	7820033	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081427, intron 1 of 45)	intron (NM_001081427, intron 1 of 45)	1576.0	NM_134080	286940.0	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90112927-2	chr3	90112427	90113427	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029937, intron 2 of 39)	B1_Mus2|SINE|Alu	8795.0	NM_029937	77595.0	Mm.159949	NM_029937	ENSMUSG00000027939	Nup210l	4930548O11Rik|R26-EGFP|Tg(Gt(ROSA)26Sor-EGFP)130910Eps	nucleoporin 210-like	protein-coding	6.0	1.5	0.0	5.0	1.5	0.0
Merged-chr4-21776879-2	chr4	21776379	21777379	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_152825, intron 1 of 17)	intron (NM_152825, intron 1 of 17)	609.0	NM_152825	77593.0	Mm.154306	NM_152825	ENSMUSG00000040455	Usp45	3110003C05Rik|4930550B20Rik|AI843191|Gcap7	ubiquitin specific petidase 45	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-31737480-2	chr11	31736968	31737968	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65606.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	0.5	3.0	2.0	9.5	2.0	8.0
Merged-chr11-53429344-2	chr11	53428844	53429844	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025352, intron 1 of 1)	B3|SINE|B2	1487.0	NM_025352	22272.0	Mm.251621	NM_025352	ENSMUSG00000044894	Uqcrq	1100001F06Rik|1500040F11Rik|5830407L17Rik|9.5kDa|AA959903|QP-C|Qpc|Uqcrb|c1502	ubiquinol-cytochrome c reductase, complex III subunit VII	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-15658864-2	chr15	15658364	15659364	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-1119237.0	NM_009869	12565.0	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-18575274-1	chr19	18574774	18575774	+	593.0	f1_c57bl6.idr	Intergenic	Intergenic	56539.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	4.5	7.0	3.5	8.5	3.0	7.0
Merged-chr11-77520226-2	chr11	77519726	77520726	+	593.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026185, exon 2 of 2)	3' UTR (NM_026185, exon 2 of 2)	5109.0	NM_026185	67477.0	Mm.432526	NM_026185	ENSMUSG00000000686	Abhd15	1300007F04Rik	abhydrolase domain containing 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42461728-2	chr19	42461228	42462228	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29940.0	NM_001356589	72832.0	Mm.313558	NM_145123	ENSMUSG00000042401	Crtac1	2810454P21Rik|AW047536|Crtac1B|Lotus	cartilage acidic protein 1	protein-coding	6.5	3.0	9.0	9.0	4.0	13.5
Merged-chr5-24493321-2	chr5	24492821	24493821	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359881, intron 11 of 15)	intron (NM_001359881, intron 11 of 15)	33527.0	NM_015739	231044.0	Mm.246596	NM_015739	ENSMUSG00000067724	Gbx1	Gbx-1	gastrulation brain homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94991804-1	chr10	94991304	94992304	+	593.0	f0_balb.idr	Intergenic	Intergenic	-47226.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141259715-2	chr7	141259215	141260215	+	593.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081118, exon 14 of 18)	exon (NM_001081118, exon 14 of 18)	6709.0	NM_001252601	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20000419-2	chr16	19999919	20000919	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-17370.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-37741966-1	chr18	37741466	37742466	+	593.0	f0_c57.idr	promoter-TSS (NM_033578)	promoter-TSS (NM_033578)	-128.0	NM_033578	93703.0	Mm.247203	NM_033578	ENSMUSG00000103088	Pcdhgb6	-	protocadherin gamma subfamily B, 6	protein-coding	3.0	3.0	2.0	0.0	6.5	2.5
Merged-chr4-101168179-2	chr4	101167679	101168679	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 11 of 24)	intron (NM_146145, intron 11 of 24)	97103.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-69992244-1	chr9	69991744	69992744	+	593.0	f0_balb.idr	intron (NM_001008238, intron 1 of 9)	intron (NM_001008238, intron 1 of 9)	2778.0	NM_001008238	12175.0	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	0.5	15.0	9.0	8.5	20.0	2.5
Merged-chr15-99713568-2	chr15	99713068	99714068	+	593.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_031842, exon 13 of 13)	3' UTR (NM_031842, exon 13 of 13)	-4025.0	NM_010271	14555.0	Mm.252391	NM_010271	ENSMUSG00000023019	Gpd1	AI747587|Gdc-1|Gdc1|mKIAA4010	glycerol-3-phosphate dehydrogenase 1 (soluble)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-10322726-2	chr10	10322226	10323226	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	149588.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83066766-1	chr6	83066266	83067266	+	593.0	f1_c57bl6.idr	3' UTR (NM_033606, exon 12 of 12)	3' UTR (NM_033606, exon 12 of 12)	3459.0	NM_009392	21909.0	Mm.37	NM_009392	ENSMUSG00000068327	Tlx2	Enx|Hox11L.1|Hox11l1|NCX|Ncx1|Tlx1l1|Tlx1l2	T cell leukemia, homeobox 2	protein-coding	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr10-130078382-2	chr10	130077882	130078882	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	3970.0	NM_146671	258666.0	Mm.377628	NM_146671	ENSMUSG00000058251	Olfr822	MOR113-2	olfactory receptor 822	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45222397-2	chr7	45221897	45222897	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285498, intron 6 of 11)	PB1D7|SINE|Alu	6644.0	NM_001285498	21677.0	Mm.3019	NM_011565	ENSMUSG00000030796	Tead2	ETEF-1|ETF|Etdf|TEAD-2|TEF-4|TEF4	TEA domain family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-68057325-2	chr18	68056825	68057825	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	B1_Mus2|SINE|Alu	124152.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-23520787-1	chr19	23520287	23521287	+	593.0	f0_c57.idr	Intergenic	L3|LINE|CR1	-72465.0	NM_174857	71738.0	Mm.50841	NM_174857	ENSMUSG00000033207	Mamdc2	1200015L10Rik|AI591564|mamcan	MAM domain containing 2	protein-coding	20.5	0.5	1.0	2.0	0.0	0.5
Merged-chr14-103045566-1	chr14	103045066	103046066	+	593.0	f0_c57.idr	Intergenic	Intergenic	-1446.0	NM_008392	16365.0	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125315443-2	chr6	125314943	125315943	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-1558.0	NM_010736	17000.0	Mm.3122	NM_010736	ENSMUSG00000030339	Ltbr	AI256028|LTbetaR|Ltar|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFRrp|Tnfbr|Tnfrsf3	lymphotoxin B receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122985502-3	chr8	122985011	122986011	+	593.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	56773.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	1.0	4.0	4.0	4.5	1.0	0.5
Merged-chr11-59557103-2	chr11	59556603	59557603	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 6 of 9)	intron (NR_153314, intron 6 of 9)	14417.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92908397-2	chr1	92907897	92908897	+	593.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_138577)	TTS (NR_138577)	1408.0	NM_175118	67446.0	Mm.46179	NM_175118	ENSMUSG00000047067	Dusp28	0710001B24Rik|AV005521	dual specificity phosphatase 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55950677-2	chr16	55950177	55951177	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-15598.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-74768391-1	chr16	74767891	74768891	+	593.0	f1_balb.idr	intron (NM_001358493, intron 1 of 28)	Lx6|LINE|L1	324379.0	NM_001358491	268902.0	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.0	0.0	0.0	0.5	2.0	0.0
Merged-chr11-82269429-2	chr11	82268929	82269929	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89617.0	NM_011329	20290.0	Mm.1283	NM_011329	ENSMUSG00000020702	Ccl1	BF534335|I-309|P500|Scya1|Tca-3|Tca3	chemokine (C-C motif) ligand 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81870922-1	chr15	81870422	81871422	+	593.0	f1_c57bl6.idr	intron (NM_026737, intron 2 of 3)	intron (NM_026737, intron 2 of 3)	970.0	NM_026737	68479.0	Mm.271715	NM_026737	ENSMUSG00000061360	Phf5a	1110007B08Rik	PHD finger protein 5A	protein-coding	5.0	21.5	10.5	7.0	33.5	16.5
Merged-chr8-34099780-1	chr8	34099280	34100280	+	593.0	f1_c57bl6.idr	intron (NM_001293759, intron 2 of 7)	intron (NM_001293759, intron 2 of 7)	8034.0	NM_001293758	22428.0	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	0.0	0.0	0.0	4.0	0.0	2.0
Merged-chr5-137523835-2	chr5	137523335	137524335	+	593.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_031408, exon 17 of 24)	exon (NM_031408, exon 17 of 24)	4955.0	NM_031408	57330.0	Mm.268344	NM_031408	ENSMUSG00000029714	Gigyf1	Perq1|mKIAA4110	GRB10 interacting GYF protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26999235-2	chr8	26998735	26999735	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21899.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153767453-2	chr1	153766953	153767953	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18027.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76616442-2	chr12	76615942	76616942	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013675, intron 15 of 35)	ORR1D2-int|LTR|ERVL-MaLR	-68517.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123344299-2	chr4	123343799	123344799	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-1047.0	NM_007558	12163.0	Mm.439749	NM_007558	ENSMUSG00000032726	Bmp8a	Bmp7r1|OP-2|OP2	bone morphogenetic protein 8a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118855812-2	chr9	118855312	118856312	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 9 of 13)	ORR1D2|LTR|ERVL-MaLR	-70724.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0.5	0.0	2.5	0.5	0.0	2.5
Merged-chr14-51435567-2	chr14	51435067	51436067	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16395.0	NR_104384	22301.0	Mm.482572	NM_009486	ENSMUSG00000070448	Vmn2r89	V2r10|V2r11	vomeronasal 2, receptor 89	protein-coding	13.0	0.0	0.5	0.0	0.0	2.0
Merged-chr4-62636434-2	chr4	62635934	62636934	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019492, intron 16 of 19)	intron (NM_019492, intron 16 of 19)	16762.0	NM_134257	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128711776-1	chr2	128711276	128712276	+	593.0	f1_balb.idr	intron (NM_008587, intron 1 of 18)	B3A|SINE|B2	12861.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	29.0	102.5	63.0	28.5	131.5	74.5
Merged-chr1-171112733-2	chr1	171112233	171113233	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-8928.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	14.0	14.0	20.0	1.0	4.0	4.5
Merged-chr1-61643407-1	chr1	61642907	61643907	+	593.0	f0_balb.idr	intron (NM_001081050, intron 1 of 22)	intron (NM_001081050, intron 1 of 22)	4583.0	NM_001081050	72823.0	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5064103-2	chr11	5063603	5064603	+	593.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001190406, exon 2 of 5)	exon (NM_001190406, exon 2 of 5)	1224.0	NM_144560	78926.0	Mm.44591	NM_030228	ENSMUSG00000034201	Gas2l1	4930500E24Rik|D0Jmb1|Gar22|TU-71.1	growth arrest-specific 2 like 1	protein-coding	0.0	0.0	0.0	1.5	0.0	0.0
Merged-chr10-18430361-1	chr10	18429861	18430861	+	593.0	f0_balb.idr	intron (NM_173390, intron 1 of 6)	intron (NM_173390, intron 1 of 6)	22686.0	NM_173390	215819.0	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-43297976-2	chr3	43297476	43298476	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2A|LINE|L1	1555358.0	NM_027271	73852.0	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-43568465-3	chr11	43567976	43568976	+	593.0	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_001045530, intron 3 of 5)	intron (NM_001045530, intron 3 of 5)	33086.0	NM_008375	16204.0	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	4.0	0.0	2.0	0.0	0.5	2.0
Merged-chr3-96633508-2	chr3	96633008	96634008	+	593.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025875, exon 6 of 6)	3' UTR (NM_025875, exon 6 of 6)	-1849.0	NR_027845	18632.0	Mm.20901	NM_011069	ENSMUSG00000028102	Pex11b	PEX11beta|Pex11pbeta	peroxisomal biogenesis factor 11 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-125113987-2	chr4	125113487	125114487	+	593.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001290701)	TTS (NM_001290701)	13894.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.0	2.0	0.5	0.0	0.0	1.5
Merged-chr2-164865559-2	chr2	164865059	164866059	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR31F_MM|LTR|ERVK	-7851.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	0.0	17.0	6.0	15.5	17.5	9.0
Merged-chr2-32911263-2	chr2	32910763	32911763	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146119, intron 3 of 13)	intron (NM_146119, intron 3 of 13)	35129.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134641145-2	chr5	134640645	134641645	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1736.0	NM_033561	22384.0	Mm.27955	NM_033561	ENSMUSG00000040731	Eif4h	AU018978|D5Ertd355e|E430026L18Rik|Ef4h|Wbscr1|Wscr1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52029257-2	chr13	52028757	52029757	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67484.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54863295-1	chr12	54862795	54863795	+	593.0	f1_balb.idr	promoter-TSS (NM_007688)	promoter-TSS (NM_007688)	-418.0	NM_007688	12632.0	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	4.5	14.0	10.5	2.5	24.0	11.5
Merged-chr17-6696708-2	chr17	6696197	6697197	+	592.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_183370, intron 1 of 12)	intron (NM_183370, intron 1 of 12)	7625.0	NM_183370	83672.0	Mm.442201	NM_031395	ENSMUSG00000041831	Sytl3	A430092N21|Slp3|Slp3-a|Slp3-b|mFLJ00307	synaptotagmin-like 3	protein-coding	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr10-118864471-3	chr10	118863946	118864946	+	592.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001014390, intron 2 of 2)	intron (NM_001014390, intron 2 of 2)	4457.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	7.0	12.0	13.0	0.0	5.0	9.0
Merged-chr3-152274045-3	chr3	152273518	152274518	+	592.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_174868, exon 16 of 16)	3' UTR (NM_174868, exon 16 of 16)	-7668.0	NM_199465	68810.0	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-140680802-2	chr4	140680302	140681302	+	592.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14897.0	NM_001112722	72754.0	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	2.0	4.5	0.0	0.5	0.0	0.0
Merged-chr8-104109072-2	chr8	104108572	104109572	+	592.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 1 of 11)	LTR33|LTR|ERVL	-3199.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-58915657-2	chr4	58915157	58916157	+	592.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2908.0	NM_172381	230249.0	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|Ecpas|mKIAA0368	expressed sequence AI314180	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-121289195-1	chr7	121288695	121289695	+	592.666687	f0_balb.idr	Intergenic	Intergenic	-103101.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142931952-3	chr5	142931481	142932481	+	592.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25227.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-72782022-2	chr17	72781522	72782522	+	592.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54606.0	NM_027166	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132860406-2	chr7	132859906	132860906	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198017, intron 1 of 8)	intron (NM_198017, intron 1 of 8)	1181.0	NM_198017	109359.0	Mm.274824	NM_198017	ENSMUSG00000030965	Abraxas2	AA589499|AI853413|Abro1|C430003P19Rik|Fam175b	BRISC complex subunit	protein-coding	25.5	59.0	24.5	25.0	38.5	31.0
Merged-chr13-118763239-1	chr13	118762739	118763739	+	592.5	f0_balb.idr	intron (NM_008002, intron 1 of 2)	intron (NM_008002, intron 1 of 2)	48540.0	NM_008002	14165.0	Mm.317323	NM_008002	ENSMUSG00000021732	Fgf10	AEY17|BB213776|Fgf-10|Gsfaey17	fibroblast growth factor 10	protein-coding	0.0	8.0	5.5	7.5	1.0	1.5
Merged-chr14-73446965-2	chr14	73446465	73447465	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-61676.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6502863-2	chr19	6502363	6503363	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 17 of 22)	intron (NM_001205234, intron 17 of 22)	40207.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57503547-2	chr16	57503047	57504047	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-45695.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	4.0	14.0	10.5	7.5	5.5	11.0
Merged-chr11-23662940-2	chr11	23662440	23663440	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023651, intron 1 of 3)	B4A|SINE|B4	-2734.0	NM_028956	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-117730059-2	chr1	117729559	117730559	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	580669.0	NR_153836	22099.0	Mm.426637	NM_011650	ENSMUSG00000026374	Tsn	2610034C24Rik|AU040286|C3PO|TB-RBP	translin	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr3-79489009-2	chr3	79488509	79489509	+	592.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001162999, exon 12 of 17)	exon (NM_001162999, exon 12 of 17)	78670.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20114845-2	chr10	20114337	20115337	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 21 of 29)	intron (NM_008580, intron 21 of 29)	-34083.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	2.5	0.5	1.0	4.5	0.0	1.5
Merged-chr2-18897213-2	chr2	18896713	18897713	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 3 of 9)	B4A|SINE|B4	-95395.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77031485-2	chr10	77030985	77031985	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1254.0	NM_001199271	20509.0	Mm.265060	NM_031196	ENSMUSG00000001436	Slc19a1	AI323572|RFC|RFC-1|RFC1	solute carrier family 19 (folate transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10221211-2	chr19	10220711	10221711	+	592.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033481, exon 8 of 26)	exon (NM_001033481, exon 8 of 26)	15178.0	NM_001163431	69038.0	Mm.375100	NM_026919	ENSMUSG00000036372	Tmem258	1810006K21Rik	transmembrane protein 258	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88501017-2	chr3	88500517	88501517	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002011, intron 1 of 11)	intron (NM_001002011, intron 1 of 11)	2335.0	NM_001111102	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-113387230-2	chr14	113386730	113387730	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-1444735.0	NR_045661	75822.0	Mm.410813	NR_045661	ENSMUSG00000115320	4930524C18Rik	-	RIKEN cDNA 4930524C18 gene	ncRNA	0.5	0.0	0.0	0.5	0.0	0.0
Merged-chr8-4254909-2	chr8	4254409	4255409	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133968, intron 3 of 4)	intron (NM_133968, intron 3 of 4)	1807.0	NM_133968	102209.0	Mm.28452	NM_133968	ENSMUSG00000011837	Snapc2	0610007H10Rik|AU015675	small nuclear RNA activating complex, polypeptide 2	protein-coding	0.0	0.0	1.0	0.0	0.0	1.5
Merged-chr7-89998139-3	chr7	89997529	89998529	+	592.5	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	MYSERV16_I-int|LTR|ERVK	-17053.0	NM_021876	13626.0	Mm.380914	NM_021876	ENSMUSG00000030619	Eed	l(7)5Rn|l7Rn5|lusk	embryonic ectoderm development	protein-coding	0.5	1.0	0.0	0.5	0.0	2.0
Merged-chr13-48972097-2	chr13	48971597	48972597	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3985.0	NR_015601	68128.0	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13153762-2	chr8	13153262	13154262	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5399.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-98919931-2	chr4	98919431	98920431	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	-3879.0	NM_001301414	230484.0	Mm.371692	NM_146144	ENSMUSG00000028560	Usp1	-	ubiquitin specific peptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125332203-2	chr5	125331751	125332751	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	8843.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	7.0	14.5	10.5	6.0	7.5	10.5
Merged-chr8-111439381-2	chr8	111438893	111439893	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10807.0	NR_105819									0.0	0.0	0.0	1.5	0.0	0.0
Merged-chr11-103316843-2	chr11	103316343	103317343	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G3|LTR|ERVL-MaLR	27859.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-36181741-2	chr3	36181241	36182241	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198192, intron 4 of 5)	intron (NM_198192, intron 4 of 5)	30661.0	NM_001101478	241944.0	Mm.260056	NM_001101478	ENSMUSG00000033883	D3Ertd254e	-	DNA segment, Chr 3, ERATO Doi 254, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-17912332-2	chr14	17911832	17912832	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-69312.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	1.5	13.0	7.5	6.0	11.5	3.5
Merged-chr1-119533532-2	chr1	119533032	119534032	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_126486, intron 3 of 3)	ID_B1|SINE|B4	2633.0	NR_126486	320069.0	Mm.406320	NR_126486	ENSMUSG00000101731	3830432H09Rik	-	RIKEN cDNA 3830432H09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113918121-2	chr5	113917621	113918621	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-9415.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	5.5	0.0	3.0	0.0	15.0	0.0
Merged-chr2-160591685-2	chr2	160591185	160592185	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54212.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89144232-2	chr15	89143732	89144732	+	592.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011161, exon 11 of 12)	exon (NM_011161, exon 11 of 12)	-3529.0	NM_013871	29857.0	Mm.38343	NM_013871	ENSMUSG00000022610	Mapk12	AW123708|Erk6|P38gamma|Prkm12|Sapk3	mitogen-activated protein kinase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86925268-2	chr4	86924764	86925764	+	592.5	f0_balb.idr|f1_balb.idr	intron (NM_001290543, intron 5 of 5)	intron (NM_001290543, intron 5 of 5)	50850.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	7.0	3.0	0.0	0.0	5.0	3.0
Merged-chr4-62469587-2	chr4	62469087	62470087	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023597, intron 1 of 10)	intron (NM_023597, intron 1 of 10)	1312.0	NM_001355523	71354.0	Mm.155573	NM_023597	ENSMUSG00000028391	Wdr31	5430402I10Rik|spWD	WD repeat domain 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-92911694-2	chr8	92911194	92912194	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357375, intron 11 of 12)	intron (NM_001357375, intron 11 of 12)	10299.0	NM_027112	69543.0	Mm.440514	NM_027112	ENSMUSG00000078144	Capns2	2310005G05Rik|30K-2	calpain, small subunit 2	protein-coding	2.0	2.5	9.5	0.0	0.0	1.5
Merged-chr14-52016671-2	chr14	52016171	52017171	+	592.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033805)	promoter-TSS (NM_001033805)	-194.0	NM_001033805	619301.0	Mm.475177	NM_001033805	ENSMUSG00000072571	Tmem253	G630016D24Rik	transmembrane protein 253	protein-coding	2.0	19.5	6.5	9.5	6.0	7.0
Merged-chr1-85735090-2	chr1	85734590	85735590	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177055, intron 1 of 5)	L1M5|LINE|L1	1516.0	NM_177055	319997.0	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16178806-1	chr19	16178306	16179306	+	592.5	f0_balb.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	14708.0	NR_033228	595139.0	Mm.405662	NR_033228		E030024N20Rik	9030417F11Rik|Ppia-ps8	peptidylprolyl isomerase A pseudogene 8	pseudo	0.0	3.5	1.5	1.0	0.0	1.0
Merged-chr14-103880803-2	chr14	103880303	103881303	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-36327.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59232220-2	chr11	59231720	59232720	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21B|LTR|ERVL	-3953.0	NM_007476	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	2.5	5.5	5.0	7.5	0.0	1.5
Merged-chr16-33781670-2	chr16	33781170	33782170	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12367.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31439638-2	chr14	31439138	31440138	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3538.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89325147-2	chr6	89324647	89325647	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008881, intron 23 of 31)	intron (NM_008881, intron 23 of 31)	37466.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117073436-2	chr10	117072936	117073936	+	592.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177798, exon 10 of 10)	3' UTR (NM_177798, exon 10 of 10)	-9584.0	NM_007636	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163616403-2	chr2	163615903	163616903	+	592.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131225, exon 4 of 4)	non-coding (NR_131225, exon 4 of 4)	9191.0	NM_001305803	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-193175052-2	chr1	193174552	193175552	+	592.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153137)	TTS (NM_153137)	1475.0	NM_181048	319266.0	Mm.482460	NM_181048	ENSMUSG00000079144	A130010J15Rik	-	RIKEN cDNA A130010J15 gene	protein-coding	1.5	2.5	0.0	1.5	0.0	0.5
Merged-chr11-118479168-2	chr11	118478668	118479668	+	592.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172573, exon 3 of 14)	exon (NM_172573, exon 3 of 14)	2336.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134854506-2	chr1	134854006	134855006	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081307, intron 13 of 23)	intron (NM_001081307, intron 13 of 23)	-50785.0	NR_015606	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-75400480-2	chr1	75399980	75400980	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001173477, intron 1 of 4)	intron (NM_001173477, intron 1 of 4)	395.0	NM_001173477	11790.0	Mm.275397	NM_007463	ENSMUSG00000026207	Speg	AW125581|Apeg1|BPEG|D1Bwg1450e|SPEGalpha|SPEGbeta|mKIAA1297	SPEG complex locus	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-43201370-2	chr12	43200870	43201870	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-167153.0	NR_148724	102636207.0		NR_148724		Gm33340	Gm40882	predicted gene, 33340	ncRNA	0.0	0.0	0.0	0.0	0.0	2.5
Merged-chr6-72869506-2	chr6	72869006	72870006	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019715, intron 1 of 6)	intron (NM_019715, intron 1 of 6)	29786.0	NM_001347231	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	6.5	16.0	23.0	6.5	26.5	19.0
Merged-chr14-104466661-2	chr14	104466161	104467161	+	592.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011143, exon 2 of 3)	exon (NM_011143, exon 2 of 3)	1338.0	NM_011143	18996.0	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-178945994-2	chr1	178945494	178946494	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	416869.0	NM_001161665	269152.0	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-5420868-2	chr5	5420368	5421368	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-40617.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105002679-2	chr3	105002179	105003179	+	592.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163332, exon 6 of 6)	3' UTR (NM_001163332, exon 6 of 6)	-40970.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172476114-2	chr1	172475594	172476594	+	592.5	f0_balb.idr|f0_c57.idr	intron (NM_029612, intron 1 of 3)	intron (NM_029612, intron 1 of 3)	734.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	0.0	14.0	4.0	2.0	0.0	9.0
Merged-chr5-96999814-2	chr5	96999314	97000314	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 1 of 15)	intron (NM_080708, intron 1 of 15)	2125.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-68369919-3	chr7	68369398	68370398	+	592.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47526.0	NR_046208	71244.0	Mm.410787	NR_046208	ENSMUSG00000108924	4933436H12Rik	-	RIKEN cDNA 4933436H12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67467122-2	chr7	67466593	67467593	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94235.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	9.5	6.0	1.5	6.0	5.5	2.0
Merged-chr14-70574563-2	chr14	70574063	70575063	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3261.0	NM_153136	213484.0	Mm.34191	NM_153136	ENSMUSG00000045211	Nudt18	BC036718	nudix (nucleoside diphosphate linked moiety X)-type motif 18	protein-coding	0.0	9.5	1.0	0.0	6.5	0.5
Merged-chr14-73553595-2	chr14	73553095	73554095	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361638, intron 1 of 9)	intron (NM_001361638, intron 1 of 9)	809.0	NM_001361638	20916.0	Mm.38951	NM_011506	ENSMUSG00000022110	Sucla2	4930547K18Rik|A-SCS|SCS-betaA	succinate-Coenzyme A ligase, ADP-forming, beta subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-118478632-2	chr13	118478092	118479092	+	592.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77576.0	NR_045982	75890.0	Mm.141235	NR_045982	ENSMUSG00000100727	1700003P14Rik	1700030O10Rik|4930584L06Rik	RIKEN cDNA 1700003P14 gene	ncRNA	8.5	5.0	10.5	0.5	7.5	2.0
Merged-chr8-4254600-2	chr8	4254100	4255100	+	592.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133968, exon 3 of 5)	exon (NM_133968, exon 3 of 5)	1498.0	NM_133968	102209.0	Mm.28452	NM_133968	ENSMUSG00000011837	Snapc2	0610007H10Rik|AU015675	small nuclear RNA activating complex, polypeptide 2	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr6-94505489-2	chr6	94504989	94505989	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026255, intron 1 of 9)	Lx9|LINE|L1	5175.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	5.0	5.0	6.0	5.0	5.5	6.0
Merged-chr17-59355435-2	chr17	59354935	59355935	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-342113.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91365462-2	chr16	91364962	91365962	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	-7321.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108578076-2	chr9	108577576	108578576	+	592.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028944)	TTS (NM_028944)	594.0	NM_031392	83669.0	Mm.335454	NM_031392	ENSMUSG00000066357	Wdr6	mWDR6	WD repeat domain 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-46221456-2	chr3	46220979	46221979	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	226462.0	NM_001101479	241989.0	Mm.119234	NM_001101479	ENSMUSG00000090919	Pabpc4l	C330050A14Rik|EG241989	poly(A) binding protein, cytoplasmic 4-like	protein-coding	0.0	3.0	0.0	0.0	0.0	0.0
Merged-chr4-123313135-2	chr4	123312666	123313666	+	592.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001256019, exon 7 of 7)	3' UTR (NM_001256019, exon 7 of 7)	10513.0	NM_022033	64059.0	Mm.270287	NM_022033	ENSMUSG00000076436	Oxct2a	Oxct|Oxct2|Scot|Scot-t1	3-oxoacid CoA transferase 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102785329-3	chr4	102784835	102785835	+	592.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144906, intron 1 of 23)	intron (NM_144906, intron 1 of 23)	25200.0	NM_001285859	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123258641-2	chr5	123258141	123259141	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	30451.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139468637-2	chr5	139468137	139469137	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-8103.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74486191-2	chr11	74485691	74486691	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	103967.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-21078259-2	chr1	21077759	21078759	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177409, intron 1 of 10)	intron (NM_177409, intron 1 of 10)	966.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105911100-3	chr1	105910608	105911608	+	592.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	79174.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130848610-2	chr5	130848110	130849110	+	592.43335	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	399818.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62448708-2	chr10	62448208	62449208	+	592.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027926)	promoter-TSS (NR_027926)	-452.0	NR_027926	74706.0	Mm.402550	NR_027926	ENSMUSG00000097129	4930507D05Rik	-	RIKEN cDNA 4930507D05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-123487834-3	chr7	123487313	123488313	+	592.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081329, intron 5 of 6)	ORR1D1-int|LTR|ERVL-MaLR	12813.0	NM_001081329	210162.0	Mm.135397	NM_175435	ENSMUSG00000030757	Zkscan2	9430065N20Rik|AW493225|Zfp694	zinc finger with KRAB and SCAN domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106388000-1	chr8	106387500	106388500	+	592.333313	f0_balb.idr	Intergenic	Intergenic	-27339.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37233849-3	chr19	37233397	37234397	+	592.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	26352.0	NM_001164336	69104.0	Mm.175989	NM_027314	ENSMUSG00000023307	March5	1810015H18Rik|2310008I22Rik|2700055A20Rik|5730499H23Rik|E130202O05Rik|MARCH-V|MITOL|Marchv|Rnf153	membrane-associated ring finger (C3HC4) 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-119522757-3	chr1	119522269	119523269	+	592.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3385.0	NM_146103	226351.0	Mm.439806	NM_146103	ENSMUSG00000098923	Tmem185b	2500001K11Rik	transmembrane protein 185B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-4988784-1	chr6	4988284	4989284	+	592.333313	f0_balb.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	85464.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-23040106-2	chr8	23039598	23040598	+	592.25	f0_c57.idr|f1_c57bl6.idr	intron (NM_001277284, intron 1 of 42)	intron (NM_001277284, intron 1 of 42)	4999.0	NM_001277284	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	6.5	5.5	2.5	4.0	1.5	2.0
Merged-chr15-36717521-2	chr15	36716959	36717959	+	592.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	73473.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80878649-2	chr10	80878149	80879149	+	592.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1167.0	NM_001081688	432478.0	Mm.235302	NM_001081688	ENSMUSG00000059406	Tmprss9	Serase-1B	transmembrane protease, serine 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39008203-2	chr6	39007703	39008703	+	592.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 5 of 12)	ORR1E|LTR|ERVL-MaLR	59383.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-38787294-2	chr12	38786794	38787794	+	592.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163154, intron 1 of 9)	IMPB_01|Satellite|Satellite	3583.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	1.5	5.5	3.5	1.5	5.5	3.5
Merged-chr7-127944868-2	chr7	127944368	127945368	+	592.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001319147, exon 5 of 15)	exon (NM_001319147, exon 5 of 15)	1857.0	NM_001319147	77613.0	Mm.334253	NM_001081374	ENSMUSG00000070371	Prss36	C330007D15Rik	protease, serine 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-4979042-2	chr6	4978542	4979542	+	592.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	75722.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11812058-2	chr19	11811558	11812558	+	592.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	7345.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80402372-2	chr10	80401872	80402872	+	592.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025650)	TTS (NM_025650)	-2841.0	NM_001306143	17192.0	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88310522-2	chr1	88310022	88311022	+	592.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_134252, intron 2 of 26)	intron (NM_134252, intron 2 of 26)	3810.0	NM_134252	171382.0	Mm.218753	NM_134252	ENSMUSG00000036251	Trpm8	CMR1|LTRPC6|LTrpC-6|TRPP8|Trp-p8	transient receptor potential cation channel, subfamily M, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-37617171-1	chr3	37616671	37617671	+	592.0	f0_balb.idr	Intergenic	Intergenic	3258.0	NR_130161	75947.0	Mm.109620	NR_130161	ENSMUSG00000085677	4930594O21Rik	-	RIKEN cDNA 4930594O21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-76255328-1	chr13	76254828	76255828	+	592.0	f0_balb.idr	Intergenic	Intergenic	-129633.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	0.0	2.0	3.0	0.0	0.0	5.5
Merged-chr4-43460202-1	chr4	43459702	43460702	+	592.0	f0_c57.idr	Intergenic	RMER4B|LTR|ERVK	-5576.0	NM_007654	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-20091536-2	chr1	20091036	20092036	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153179, intron 63 of 66)	L1Md_F2|LINE|L1	-264918.0	NR_045734	75028.0	Mm.417820	NR_045734	ENSMUSG00000089914	4930486I03Rik	-	RIKEN cDNA 4930486I03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-34702777-2	chr12	34702271	34703271	+	592.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-173882.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	25.5	20.5	12.0	48.5	37.5	19.5
Merged-chr11-23819026-2	chr11	23818526	23819526	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_C_Mam|LINE|RTE-X	-48056.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-23842502-2	chr5	23842002	23843002	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025394, intron 1 of 2)	PB1D10|SINE|Alu	1643.0	NM_025394	66169.0	Mm.291868	NM_025394	ENSMUSG00000028998	Tomm7	1110020J08Rik|AW047273|Tom7	translocase of outer mitochondrial membrane 7	protein-coding	11.5	0.0	1.0	8.5	6.5	4.5
Merged-chr5-121396131-1	chr5	121395631	121396631	+	592.0	f1_balb.idr	Intergenic	Intergenic	-1851.0	NM_172722	231713.0	Mm.33919	NM_172722	ENSMUSG00000042719	Naa25	4833422K13Rik|A630046C11|AI450868|C330023M02Rik|Mdm20	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding	0.0	3.5	2.5	1.5	3.5	7.5
Merged-chr9-77903699-1	chr9	77903199	77904199	+	592.0	f1_balb.idr	Intergenic	Intergenic	-13666.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.0	0.0	0.0	1.5	1.5	0.0
Merged-chr4-155580588-2	chr4	155580088	155581088	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355599, intron 2 of 10)	intron (NM_001355599, intron 2 of 10)	16773.0	NM_001355599	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-13386170-2	chr1	13385670	13386670	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12087.0	NM_008678	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45301858-2	chr9	45301358	45302358	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-17242.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128300187-2	chr7	128299687	128300687	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2056.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88513429-1	chr4	88512929	88513929	+	592.0	f1_balb.idr	Intergenic	Intergenic	9365.0	NM_010510	15977.0	Mm.1245	NM_010510	ENSMUSG00000048806	Ifnb1	IFN-beta|IFNB|Ifb	interferon beta 1, fibroblast	protein-coding	1.5	2.5	0.0	0.0	3.0	3.0
Merged-chr13-41595356-1	chr13	41594856	41595856	+	592.0	f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-10860.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128204980-1	chr8	128204480	128205480	+	592.0	f0_balb.idr	Intergenic	Intergenic	73245.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0.0	1.5	0.0	4.5	0.5	4.0
Merged-chr14-51262643-1	chr14	51262143	51263143	+	592.0	f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-6531.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	0.0	0.0	0.0	6.0	3.5	0.0
Merged-chr6-125158790-2	chr6	125158290	125159290	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039669, intron 8 of 9)	intron (NM_001039669, intron 8 of 9)	6983.0	NM_008084	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	1.5	3.5	1.5	0.0	1.5	0.5
Merged-chr19-47755833-1	chr19	47755333	47756333	+	592.0	f0_balb.idr	promoter-TSS (NR_106165)	promoter-TSS (NR_106165)	-676.0	NR_106165	102465883.0		NR_106165	ENSMUSG00000099069	Mir8090	Gm27862|mmu-mir-8090	microRNA 8090	ncRNA	8.5	16.5	11.0	4.0	11.0	11.0
Merged-chr9-50841391-1	chr9	50840891	50841891	+	592.0	f1_balb.idr	intron (NR_045601, intron 13 of 13)	intron (NR_045601, intron 13 of 13)	-15533.0	NM_001034085	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	0.0	4.0	6.5	0.5	5.0	1.5
Merged-chr17-58701702-2	chr17	58701202	58702202	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A|LTR|ERVK	289673.0	NM_027001	69239.0	Mm.246732	NM_027001	ENSMUSG00000024227	Pdzph1	2610034M16Rik|AV114557	PDZ and pleckstrin homology domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-9905395-2	chr1	9904895	9905895	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3243.0	NM_177722	240697.0	Mm.259800	NM_177722	ENSMUSG00000046101	Mcmdc2	6030422M02Rik	minichromosome maintenance domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130613773-1	chr5	130613273	130614273	+	592.0	f0_c57.idr	intron (NM_021371, intron 2 of 5)	MTD|LTR|ERVL-MaLR	164981.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50930765-2	chr16	50930265	50931265	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	147356.0	NR_131005	78639.0	Mm.160109	NR_131005	ENSMUSG00000092276	1700116B05Rik	-	RIKEN cDNA 1700116B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119189107-1	chr2	119188607	119189607	+	592.0	f1_balb.idr	intron (NM_139139, intron 1 of 10)	B3|SINE|B2	14598.0	NM_001039223	623781.0	Mm.389344	NM_001039223	ENSMUSG00000055926	Gm14137	-	predicted gene 14137	protein-coding	8.5	0.0	5.0	9.0	3.0	4.0
Merged-chr15-53329432-1	chr15	53328932	53329932	+	592.0	f0_balb.idr	intron (NM_010162, intron 1 of 10)	MTD|LTR|ERVL-MaLR	16751.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-150527-1	chr1	150027	151027	+	592.0	f1_c57bl6.idr	Intergenic	Intergenic	3520971.0	NM_001011874	497097.0	Mm.454496	NM_001011874	ENSMUSG00000051951	Xkr4	AY534250|Gm210|XRG4|mKIAA1889	X-linked Kx blood group related 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132691228-2	chr7	132690728	132691728	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 6 of 6)	Lx9|LINE|L1	80585.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-61656712-3	chr2	61656235	61657235	+	592.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-54959.0	NM_021526	59029.0	Mm.218198	NM_021526	ENSMUSG00000026914	Psmd14	2610312C03Rik|3200001M20Rik|AA986732|Pad1|Poh1|rpm11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88875291-2	chr6	88874791	88875791	+	592.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347327)	promoter-TSS (NM_001347327)	-247.0	NM_001347327	319655.0	Mm.302613	NM_176973	ENSMUSG00000033152	Podxl2	D130074J02Rik|PODLX2	podocalyxin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43785881-1	chr5	43785381	43786381	+	592.0	f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-3732.0	NM_178729	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	2.5	0.0	4.0	0.0	4.5	4.5
Merged-chr10-81362830-2	chr10	81362330	81363330	+	592.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028657, exon 7 of 10)	exon (NM_028657, exon 7 of 10)	2990.0	NM_001014836	432479.0	Mm.440450	NM_001014836	ENSMUSG00000020234	4930404N11Rik	2210409H10Rik|5730551K18Rik|AI854616	RIKEN cDNA 4930404N11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25496824-1	chr14	25496324	25497324	+	592.0	f0_balb.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	-37615.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21169694-1	chr9	21169194	21170194	+	592.0	f1_c57bl6.idr	intron (NM_183408, intron 1 of 14)	B3A|SINE|B2	3980.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25783286-2	chr7	25782786	25783786	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 4 of 19)	B1_Mur4|SINE|Alu	5447.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149436893-1	chr4	149436393	149437393	+	592.0	f1_balb.idr	Intergenic	MMVL30-int|LTR|ERV1	-10262.0	NM_022022	63958.0	Mm.415260	NM_022022	ENSMUSG00000028960	Ube4b	4930551I19Rik|4933406G05Rik|AU014668|D4Bwg0973e|UFD2|UFD2a|Ufd2p|mKIAA0684	ubiquitination factor E4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7566600-2	chr9	7566100	7567100	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008611, intron 8 of 9)	intron (NM_008611, intron 8 of 9)	-4796.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97461319-1	chr6	97460819	97461819	+	592.0	f1_balb.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-2033.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	260.5	463.0	366.5	218.0	477.5	482.5
Merged-chr11-34700461-2	chr11	34699961	34700961	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 14 of 51)	intron (NM_033374, intron 14 of 51)	83444.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0.0	0.0	0.0	5.5	0.0	0.0
Merged-chr5-146782949-2	chr5	146782449	146783449	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	12007.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73592020-2	chr15	73591520	73592520	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357747, intron 2 of 7)	intron (NM_001357747, intron 2 of 7)	4506.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110908813-1	chr7	110908313	110909313	+	592.0	f0_balb.idr	intron (NM_194464, intron 10 of 20)	HAL1b|LINE|L1	3828.0	NR_045267	100504184.0	Mm.441327	NR_045267	ENSMUSG00000087160	Gm16336	-	predicted gene 16336	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44422062-2	chr11	44421562	44422562	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	21999.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	0.0	13.0	1.0	0.0	4.0	1.0
Merged-chr8-126564365-2	chr8	126563865	126564865	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29071.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	5.0	4.0	5.5	5.0	4.0	6.5
Merged-chr7-137481371-2	chr7	137480871	137481871	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A2|LTR|ERVK	43697.0	NR_033611	620016.0	Mm.388932	NR_033611	ENSMUSG00000100863	Gm12669	-	glutaredoxin 3 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3418072-2	chr12	3417572	3418572	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030694, intron 1 of 2)	intron (NR_030694, intron 1 of 2)	8675.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135320771-2	chr4	135320271	135321271	+	592.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001130477, exon 18 of 18)	3' UTR (NM_001130477, exon 18 of 18)	32443.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81007281-2	chr15	81006781	81007781	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357669, intron 6 of 20)	intron (NM_001357669, intron 6 of 20)	29516.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118048448-1	chr10	118047948	118048948	+	592.0	f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-93339.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	2.5	7.5	1.5	2.5	0.0	3.5
Merged-chr5-66001587-2	chr5	66001087	66002087	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027961, intron 1 of 6)	intron (NR_027961, intron 1 of 6)	2698.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133311967-1	chr4	133311467	133312467	+	592.0	f1_c57bl6.idr	intron (NM_199306, intron 5 of 15)	intron (NM_199306, intron 5 of 15)	27348.0	NM_199306	230796.0	Mm.226576	NM_199306	ENSMUSG00000037622	Wdtc1	Gm695|adipose|adp	WD and tetratricopeptide repeats 1	protein-coding	0.0	3.0	8.5	1.0	1.0	3.5
Merged-chr2-26536545-2	chr2	26536045	26537045	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32618.0	NR_132655	102639736.0		NR_132655		Gm35978	-	predicted gene, 35978	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102811967-2	chr14	102811467	102812467	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	170665.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33628399-2	chr17	33627899	33628899	+	592.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026712)	promoter-TSS (NM_026712)	-693.0	NR_034153	328801.0	Mm.181488	NM_026712	ENSMUSG00000073423	Zfp414	0610030H11Rik|Znf414	zinc finger protein 414	protein-coding	2.5	0.5	0.0	0.0	3.0	0.0
Merged-chr6-144902778-2	chr6	144902278	144903278	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146034.0	NM_001024468	12035.0	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70081214-1	chr9	70080714	70081714	+	592.0	f0_balb.idr	Intergenic	Intergenic	-43126.0	NM_028087	72077.0	Mm.195555	NM_028087	ENSMUSG00000032226	Gcnt3	2010013H22Rik|2210021I22Rik|2210401J11Rik	glucosaminyl (N-acetyl) transferase 3, mucin type	protein-coding	1.0	17.5	0.0	1.0	12.5	0.0
Merged-chr18-53233306-2	chr18	53232806	53233806	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_I-int|LTR|ERV1	-12356.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17834665-2	chr6	17834165	17835165	+	592.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001289627, exon 3 of 16)	exon (NM_001289627, exon 3 of 16)	85495.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-13543018-2	chr17	13542518	13543518	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045436, intron 2 of 4)	intron (NR_045436, intron 2 of 4)	11076.0	NR_045436	72578.0	Mm.46549	NR_045436	ENSMUSG00000038347	2700054A10Rik	-	RIKEN cDNA 2700054A10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-8655670-1	chr6	8655170	8656170	+	592.0	f0_balb.idr	intron (NM_010492, intron 10 of 13)	intron (NM_010492, intron 10 of 13)	102788.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-64092645-1	chr16	64092145	64093145	+	592.0	f1_balb.idr	Intergenic	Intergenic	-228488.0	NM_010140	13837.0	Mm.1977	NM_010140	ENSMUSG00000052504	Epha3	AW492086|Cek4|EK4|ETK1|End3|Hek|Hek4|Mek4|Tyro4	Eph receptor A3	protein-coding	7.0	0.5	1.0	1.5	0.5	1.0
Merged-chr9-37460615-2	chr9	37460115	37461115	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-27440.0	NM_001164767	19649.0	Mm.212826	NM_011248	ENSMUSG00000032128	Robo3	Rbig1|Rig-1|Rig1|Robo3a|Robo3b	roundabout guidance receptor 3	protein-coding	1.5	0.0	1.0	1.5	0.0	2.5
Merged-chr11-46076110-2	chr11	46075610	46076610	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291890, intron 3 of 22)	(CAGT)n|Simple_repeat|Simple_repeat	20126.0	NM_001291891	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-98126002-2	chr3	98125502	98126502	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 21 of 33)	intron (NM_010928, intron 21 of 33)	-34632.0	NM_027665	71078.0	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-27645624-2	chr10	27645124	27646124	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-28682.0	NM_008481	16773.0	Mm.256087	NM_008481	ENSMUSG00000019899	Lama2	5830440B04|dy|mKIAA4087|mer|merosin	laminin, alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145811704-2	chr2	145811204	145812204	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	B1F|SINE|Alu	25588.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5974385-2	chr11	5973885	5974885	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001174054, intron 17 of 20)	intron (NM_001174054, intron 17 of 20)	18627.0	NM_019661	56418.0	Mm.294821	NM_019661	ENSMUSG00000002741	Ykt6	0610042I15Rik|1810013M05Rik|AW105923	YKT6 v-SNARE homolog (S. cerevisiae)	protein-coding	0.0	3.0	1.0	0.0	1.5	0.5
Merged-chr4-117484876-1	chr4	117484376	117485376	+	592.0	f1_c57bl6.idr	intron (NM_025739, intron 2 of 14)	CpG	12176.0	NM_025739	66743.0	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	3.0	10.0	0.0	0.0	6.0	0.0
Merged-chr7-19416869-2	chr7	19416410	19417410	+	592.0	f0_balb.idr|f1_balb.idr	TTS (NR_073014)	TTS (NR_073014)	4507.0	NR_073014	100503495.0	Mm.410762	NR_073014	ENSMUSG00000040705	A930016O22Rik	-	RIKEN cDNA A930016O22 gene	ncRNA	0.0	0.0	0.0	1.5	0.0	2.5
Merged-chr11-30212076-2	chr11	30211576	30212576	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175836, intron 1 of 34)	B1_Mus2|SINE|Alu	7696.0	NM_175836	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	10.5	10.0	8.5	3.5	1.0	11.5
Merged-chr9-62826261-2	chr9	62825761	62826761	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-12526.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120794500-2	chr8	120794000	120795000	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55861.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98838420-2	chr11	98837920	98838920	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080925, intron 1 of 14)	intron (NM_001080925, intron 1 of 14)	1635.0	NM_001080925	268480.0	Mm.340766	NM_001080925	ENSMUSG00000038020	Rapgefl1	B230105J10	Rap guanine nucleotide exchange factor (GEF)-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122444111-2	chr14	122443611	122444611	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033325, intron 1 of 2)	(CA)n|Simple_repeat|Simple_repeat	7004.0	NR_033325	328479.0	Mm.86095	NR_033325	ENSMUSG00000064052	Gm5089	6530402A20|C030005G22Rik|EG328479	predicted gene 5089	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-20342039-2	chr8	20341539	20342539	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177408, intron 7 of 9)	intron (NM_001177408, intron 7 of 9)	21163.0	NM_001177408	100040599.0	Mm.491087	NM_001177408	ENSMUSG00000074449	Gm15319	-	predicted gene 15319	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3964467-1	chr11	3963967	3964967	+	592.0	f0_c57.idr	intron (NM_022889, intron 1 of 14)	intron (NM_022889, intron 1 of 14)	492.0	NM_022889	64934.0	Mm.28659	NM_022889	ENSMUSG00000020430	Pes1	-	pescadillo ribosomal biogenesis factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32605733-2	chr2	32605233	32606233	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025311, intron 1 of 4)	intron (NM_001025311, intron 1 of 4)	-1252.0	NM_001289547	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51519389-2	chr10	51518889	51519889	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	28491.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-77268328-2	chr5	77267828	77268828	+	592.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011263, exon 2 of 4)	exon (NM_011263, exon 2 of 4)	2834.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53270873-2	chr18	53270373	53271373	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	L2|LINE|L2	25211.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85719516-1	chr8	85719016	85720016	+	592.0	f1_balb.idr	intron (NM_028007, intron 17 of 17)	intron (NM_028007, intron 17 of 17)	-18592.0	NM_001357288	74513.0	Mm.126079	NM_001081324	ENSMUSG00000036902	Neto2	5530601C23Rik|AI854825|BTCL2	neuropilin (NRP) and tolloid (TLL)-like 2	protein-coding	0.0	0.5	1.0	0.0	1.0	0.5
Merged-chr10-9676511-1	chr10	9676011	9677011	+	592.0	f0_balb.idr	Intergenic	Intergenic	-1303.0	NM_177271	320825.0	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding	0.0	5.5	0.5	0.0	4.5	1.0
Merged-chr10-82695105-2	chr10	82694605	82695605	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-3902.0	NM_001081218	67933.0	Mm.127405	NM_026462	ENSMUSG00000020246	Hcfc2	1700129L13Rik|AU019838|fkls	host cell factor C2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-92388298-2	chr11	92387798	92388798	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-710068.0	NM_001361707	72605.0	Mm.342160	NM_028296	ENSMUSG00000056158	Car10	2700029L05Rik|BB085816|Ca10	carbonic anhydrase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-128748351-1	chr1	128747851	128748851	+	592.0	f1_balb.idr	Intergenic	Intergenic	-156052.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	1.5	4.0	2.0	10.0	7.0	3.0
Merged-chr7-28965453-2	chr7	28964953	28965953	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3121.0	NM_001360548	60595.0	Mm.81144	NM_021895	ENSMUSG00000054808	Actn4	C77391	actinin alpha 4	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr13-112787750-2	chr13	112787250	112788250	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13027.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0.0	0.0	0.0	3.0	0.0	0.0
Merged-chr8-126748584-1	chr8	126748084	126749084	+	592.0	f1_c57bl6.idr	Intergenic	Intergenic	-100436.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	4.0	7.0	3.5	0.0	1.0	0.5
Merged-chr16-30727716-1	chr16	30727216	30728216	+	592.0	f0_balb.idr	Intergenic	Lx7|LINE|L1	127993.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0.0	3.5	0.0	5.0	9.0	0.0
Merged-chr18-6766851-2	chr18	6766351	6767351	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181070, intron 1 of 6)	intron (NM_181070, intron 1 of 6)	1684.0	NM_001278447	19330.0	Mm.132802	NM_181070	ENSMUSG00000073639	Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78893669-1	chr15	78893169	78894169	+	592.0	f1_balb.idr	intron (NM_145929, intron 16 of 16)	intron (NM_145929, intron 16 of 16)	1829.0	NR_105920	102466210.0		NR_105920	ENSMUSG00000099267	Mir6955	Gm27769|mmu-mir-6955	microRNA 6955	ncRNA	5.0	2.0	3.0	0.0	2.5	1.5
Merged-chr12-76367802-1	chr12	76367302	76368302	+	592.0	f0_balb.idr	intron (NM_028356, intron 1 of 2)	intron (NM_028356, intron 1 of 2)	1662.0	NM_001172104	109929.0	Mm.41880	NM_028356	ENSMUSG00000056459	Zbtb25	2810462M08Rik|2900064P18Rik|AI842128|Kup|Zfp-50|Zfp50	zinc finger and BTB domain containing 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-141000294-2	chr5	140999813	141000813	+	591.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_175362, intron 1 of 24)	intron (NM_175362, intron 1 of 24)	283.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr3-103170805-2	chr3	103170305	103171305	+	591.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026602)	promoter-TSS (NM_026602)	-850.0	NM_026602	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-77783434-3	chr14	77782938	77783938	+	591.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15530.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	9.0	4.0	3.5	1.0	4.5	3.0
Merged-chr2-166715949-2	chr2	166715449	166716449	+	591.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2117.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36540941-3	chr15	36540451	36541451	+	591.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025712, intron 4 of 13)	intron (NM_025712, intron 4 of 13)	14622.0	NM_001347022	66696.0	Mm.253627	NM_025712	ENSMUSG00000013611	Snx31	4631426E05Rik	sorting nexin 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43914348-2	chr5	43913848	43914848	+	591.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45539.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	2.0	3.0	1.5	2.0	4.5	1.5
Merged-chr2-14329480-2	chr2	14329003	14330003	+	591.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 28 of 29)	intron (NM_008625, intron 28 of 29)	-58895.0	NM_001012305	277468.0	Mm.44662	NM_001012305	ENSMUSG00000036949	Slc39a12	AW046938|Gm731	solute carrier family 39 (zinc transporter), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60735755-2	chr18	60735255	60736255	+	591.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	-2614.0	NM_001348102	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	9.0	19.0	14.0	3.5	7.0	15.5
Merged-chr12-98750046-2	chr12	98749546	98750546	+	591.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_027648, intron 2 of 12)	intron (NR_027648, intron 2 of 12)	3078.0	NM_029334	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180406509-2	chr1	180406009	180407009	+	591.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-75960.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72587408-2	chr5	72586908	72587908	+	591.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024147, intron 1 of 2)	CpG	142.0	NM_001024147	545758.0	Mm.332426	NM_001024147	ENSMUSG00000060204	Gm5868	EG545758	predicted gene 5868	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80946912-2	chr10	80946412	80947412	+	591.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	16821.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-57590227-2	chr8	57589682	57590682	+	591.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 1 of 11)	intron (NM_001167981, intron 1 of 11)	-61571.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-10372600-3	chr2	10372128	10373128	+	591.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177386, intron 1 of 22)	CpG	192.0	NM_177386	353282.0	Mm.329991	NM_177386	ENSMUSG00000061186	Sfmbt2	D2Wsu23e|D330030P06Rik	Scm-like with four mbt domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5717245-2	chr17	5716745	5717745	+	591.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 5 of 8)	intron (NM_146073, intron 5 of 8)	-81412.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128058020-3	chr8	128057516	128058516	+	591.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	220209.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128579380-2	chr4	128578864	128579864	+	591.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30734.0	NM_177758	269585.0	Mm.153291	NM_177758	ENSMUSG00000061894	Zscan20	C130001F22|Zfp31|Zkscan20	zinc finger and SCAN domains 20	protein-coding	9.0	3.0	0.0	7.5	0.0	0.0
Merged-chr4-141270952-2	chr4	141270452	141271452	+	591.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	-7487.0	NR_151527	100503810.0		NR_151527	ENSMUSG00000085395	Gm13056	-	predicted gene 13056	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4592136-3	chr12	4591634	4592634	+	591.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198968)	promoter-TSS (NM_001198968)	-874.0	NM_001198969	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-166431655-2	chr1	166431155	166432155	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-21827.0	NM_175170	71592.0	Mm.192094	NM_175170	ENSMUSG00000040596	Pogk	9130401E23Rik|BASS2|mKIAA1513	pogo transposable element with KRAB domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-54314620-2	chr10	54314120	54315120	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	238698.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66091243-2	chr5	66090743	66091743	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	B4A|SINE|B4	6936.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.0	4.5	0.5	0.0	5.5	0.5
Merged-chr17-34983848-2	chr17	34983348	34984348	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204274, intron 2 of 4)	Lx|LINE|L1	1718.0	NM_030597	27756.0	Mm.165735	NM_030597	ENSMUSG00000007050	Lsm2	D17H6S56E-2|D17H6S56E2|Dmapl|Dmpkap|G7b|Sm-X5|SmX5|snRNP	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28264756-2	chr17	28264256	28265256	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 2 of 7)	intron (NM_011145, intron 2 of 7)	-6952.0	NR_045427	69050.0	Mm.486938	NR_045427	ENSMUSG00000002250	1810013A23Rik	-	RIKEN cDNA 1810013A23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-119929925-2	chr1	119929407	119930407	+	591.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001115074, intron 20 of 22)	intron (NM_001115074, intron 20 of 22)	-16739.0	NM_175106	66343.0	Mm.49942	NM_175106	ENSMUSG00000036975	Tmem177	2300008B03Rik	transmembrane protein 177	protein-coding	0.0	0.5	3.0	0.0	0.0	0.0
Merged-chr11-120523975-2	chr11	120523475	120524475	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-6752.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30966555-2	chr5	30966055	30967055	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2122.0	NM_053085	69852.0	Mm.57874	NM_053085	ENSMUSG00000006642	Tcf23	2010002O16Rik|Out|bHLHa24	transcription factor 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr6-8736319-2	chr6	8735841	8736841	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252266, intron 5 of 11)	intron (NM_001252266, intron 5 of 11)	22117.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-21414444-2	chr12	21413944	21414944	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011739, intron 1 of 4)	intron (NM_011739, intron 1 of 4)	2992.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	7.0	4.5	10.5	2.5	13.5	0.0
Merged-chr10-77360960-2	chr10	77360460	77361460	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024838, intron 1 of 11)	intron (NM_001024838, intron 1 of 11)	57313.0	NM_130895	110532.0	Mm.276815	NM_130895	ENSMUSG00000020262	Adarb1	1700057H01Rik|AW124433|AW558573|Adar2|BB220382|D10Bwg0447e|Red1	adenosine deaminase, RNA-specific, B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91650147-2	chr16	91649647	91650647	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019973, intron 1 of 4)	intron (NM_019973, intron 1 of 4)	2323.0	NM_178880	20658.0	Mm.46401	NM_019973	ENSMUSG00000022961	Son	2900011L12Rik|AA409051|AU067731|C81487|mKIAA1019|nrebp	Son DNA binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-33126464-2	chr12	33125968	33126968	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_015602, intron 4 of 5)	intron (NR_015602, intron 4 of 5)	21118.0	NR_015602	320046.0	Mm.208337	NR_015602	ENSMUSG00000052125	F730043M19Rik	-	RIKEN cDNA F730043M19 gene	ncRNA	6.5	7.0	6.5	0.0	0.0	11.0
Merged-chr1-181531378-2	chr1	181530878	181531878	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19927.0	NM_207280	403180.0	Mm.220754	NM_207280	ENSMUSG00000050625	Ccdc121	6530421E24Rik|Gm755	coiled-coil domain containing 121	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80456116-2	chr18	80455616	80456616	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 4 of 12)	intron (NM_026295, intron 4 of 12)	13551.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	0.0	12.0	1.0	0.0	2.5	3.0
Merged-chr1-151620028-2	chr1	151619528	151620528	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	B1F|SINE|Alu	48655.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-105032299-1	chr13	105031799	105032799	+	591.5	f0_balb.idr	intron (NM_029879, intron 2 of 5)	intron (NM_029879, intron 2 of 5)	22631.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28389983-2	chr7	28389483	28390483	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026042, intron 3 of 3)	B1_Mus2|SINE|Alu	2707.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120858858-2	chr4	120858356	120859356	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_182929, intron 1 of 7)	intron (NM_182929, intron 1 of 7)	4057.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	10.0	21.5	5.5	12.5	14.5	13.0
Merged-chr4-144660277-2	chr4	144659778	144660778	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY2_LTR|LTR|ERVK	26090.0	NM_001085504	230890.0	Mm.457843	NM_001085504	ENSMUSG00000078505	Gm436	-	predicted gene 436	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8341137-2	chr15	8340637	8341637	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_201232, intron 11 of 45)	intron (NM_201232, intron 11 of 45)	103326.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32692033-2	chr12	32691533	32692533	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-128302.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60868608-2	chr2	60868108	60869108	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	12830.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31460290-2	chr14	31459790	31460790	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24190.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107674283-2	chr4	107673783	107674783	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9306.0	NR_151717	56296.0	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	0.0	1.0	1.0	0.0	0.0	0.5
Merged-chr4-85186181-2	chr4	85185681	85186681	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-19275.0	NM_019535	20404.0	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33822813-2	chr2	33822313	33823313	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 6 of 9)	intron (NM_175184, intron 6 of 9)	16997.0	NR_045729	320482.0	Mm.442057	NR_045729	ENSMUSG00000086484	Nron	A630071L07Rik|Gm24353	non-protein coding RNA, repressor of NFAT	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173173192-2	chr2	173172692	173173692	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20119.0	NM_011044	18534.0	Mm.266867	NM_011044	ENSMUSG00000027513	Pck1	AI265463|PEPCK|PEPCK-C|Pck-1	phosphoenolpyruvate carboxykinase 1, cytosolic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21013814-2	chr9	21013314	21014314	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2126.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114724642-2	chr11	114724142	114725142	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2770.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93654547-2	chr1	93654047	93655047	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18820.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	0.0	0.0	0.0	0.0	4.0	0.0
Merged-chr7-19323263-2	chr7	19322767	19323767	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-13222.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.0	3.5	0.0	0.0	2.5	0.5
Merged-chr10-77286552-2	chr10	77286052	77287052	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	27252.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101656940-2	chr11	101656440	101657440	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-8601.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25330435-2	chr2	25329935	25330935	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_027448, intron 1 of 1)	B2_Mm2|SINE|B2	2136.0	NR_027448	100272219.0	Mm.382103	NR_027448	ENSMUSG00000097345	AA543186	-	expressed sequence AA543186	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111511906-2	chr8	111511406	111512406	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170742, intron 1 of 25)	B1_Mur4|SINE|Alu	10201.0	NM_001170742	319481.0	Mm.247294	NM_176923	ENSMUSG00000031959	Wdr59	5430401O09Rik|Cdw12	WD repeat domain 59	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-98971967-2	chr6	98971467	98972467	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 9 of 17)	intron (NM_001197321, intron 9 of 17)	56331.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-86972659-2	chr10	86972159	86973159	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 6 of 68)	intron (NM_138673, intron 6 of 68)	35283.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20999052-2	chr9	20998552	20999552	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3685.0	NM_023167	66163.0	Mm.427576	NM_023167	ENSMUSG00000003299	Mrpl4	1110017G11Rik	mitochondrial ribosomal protein L4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70076195-2	chr14	70075705	70076705	+	591.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-1240.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99125055-2	chr15	99124555	99125555	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1790.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113016274-2	chr12	113015774	113016774	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081170, intron 1 of 23)	intron (NM_001081170, intron 1 of 23)	1766.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114669748-2	chr11	114669248	114670248	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048058, intron 2 of 3)	intron (NM_001048058, intron 2 of 3)	967.0	NM_001048058	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-27550679-2	chr18	27550179	27551179	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1009485.0	NR_045398	320624.0	Mm.50107	NR_045398		4930474G06Rik	-	RIKEN cDNA 4930474G06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-20473600-2	chr15	20473100	20474100	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	193150.0	NM_022816	64833.0	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding	1.5	3.0	0.5	0.0	0.0	0.0
Merged-chr4-142080764-2	chr4	142080264	142081264	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-3534.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106456798-2	chr8	106456298	106457298	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41459.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7879530-2	chr9	7879030	7880030	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6360.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52316737-2	chr6	52316237	52317237	+	591.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_007966, exon 3 of 3)	exon (NM_007966, exon 3 of 3)	-1905.0	NR_038163	70593.0	Mm.158412	NR_038163	ENSMUSG00000086126	Evx1os	5730457N03Rik|Evx1as	even skipped homeotic gene 1, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105565044-2	chr5	105564544	105565544	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	45573.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16748279-2	chr1	16747779	16748779	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	59823.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	7.0	2.5	5.5	4.0	16.0	3.0
Merged-chr8-106687669-2	chr8	106687176	106688176	+	591.5	f0_balb.idr|f1_balb.idr	intron (NM_173037, intron 1 of 17)	intron (NM_173037, intron 1 of 17)	4608.0	NM_173037	272538.0	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	0.5	2.5	1.0	1.5	0.0	0.0
Merged-chr7-28366273-2	chr7	28365773	28366773	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138752, intron 9 of 18)	intron (NM_138752, intron 9 of 18)	6389.0	NM_138752	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49209262-2	chr13	49208762	49209762	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026738, intron 1 of 5)	Lx2A1|LINE|L1	6764.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8208567-2	chr15	8208067	8209067	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162906, intron 21 of 52)	MLT1E2|LTR|ERVL-MaLR	39461.0	NM_001162906	73692.0	Mm.164436	NM_001162906	ENSMUSG00000039801	2410089E03Rik	4732468D17Rik|Hug|Jbts17|b2b012Clo	RIKEN cDNA 2410089E03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-81668632-2	chr17	81668118	81669118	+	591.5	f0_c57.idr|f1_balb.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	69769.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10710113-2	chr19	10709613	10710613	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361959, intron 2 of 3)	intron (NM_001361959, intron 2 of 3)	9345.0	NM_001361964	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30058092-2	chr16	30057592	30058592	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-7265.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	0.5	7.0	4.0	4.5	0.0	1.0
Merged-chr6-38959557-2	chr6	38959057	38960057	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	intron (NM_011539, intron 3 of 12)	40571.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129637324-2	chr2	129636824	129637824	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	41862.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.0	6.0	4.5	0.0	0.0	3.0
Merged-chr6-28836514-2	chr6	28836014	28837014	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 16 of 23)	MIR3|SINE|MIR	-4767.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-40927205-2	chr14	40926705	40927705	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	21004.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5235097-2	chr17	5234597	5235597	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	183670.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-52021493-2	chr14	52020993	52021993	+	591.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253696)	promoter-TSS (NM_001253696)	-760.0	NM_027248	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	15.0	47.0	18.5	10.0	29.0	7.0
Merged-chr10-121693330-5	chr10	121692806	121693806	+	591.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177335, exon 13 of 13)	3' UTR (NM_177335, exon 13 of 13)	-46624.0	NM_001359720	270802.0	Mm.209172	NM_173022	ENSMUSG00000053684	BC048403	E030027L10	cDNA sequence BC048403	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99560222-2	chr12	99559722	99560722	+	591.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-3619.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99163319-2	chr10	99162819	99163819	+	591.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027740, intron 9 of 11)	intron (NM_027740, intron 9 of 11)	55184.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44435928-3	chr11	44435433	44436433	+	591.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	34615.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	15.0	11.5	13.0	12.0	17.0	4.5
Merged-chr1-171211732-1	chr1	171211232	171212232	+	591.333313	f1_balb.idr	Intergenic	RMER19C|LTR|ERVK	-2238.0	NM_009803	12355.0	Mm.486506	NM_009803	ENSMUSG00000005677	Nr1i3	AA209988|AI551208|CAR|CAR-beta|Care2|ESTM32|MB67	nuclear receptor subfamily 1, group I, member 3	protein-coding	2.0	4.5	4.5	2.0	7.5	7.5
Merged-chr13-41614707-3	chr13	41614202	41615202	+	591.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163572, intron 1 of 2)	intron (NM_001163572, intron 1 of 2)	8486.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123447630-2	chr5	123447130	123448130	+	591.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177582)	TTS (NM_177582)	34471.0	NM_029594	76399.0	Mm.75049	NM_029594	ENSMUSG00000029437	Il31	1700013B14Rik	interleukin 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124622173-2	chr5	124621673	124622673	+	591.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_026486, intron 13 of 18)	B3|SINE|B2	-6879.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102698292-2	chr12	102697792	102698792	+	591.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	6577.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87433853-2	chr11	87433353	87434353	+	591.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_031386, exon 2 of 31)	exon (NM_031386, exon 2 of 31)	6262.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95906313-3	chr3	95905813	95906813	+	591.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1628.0	NM_001355750	23831.0	Mm.489647	NM_011797	ENSMUSG00000038526	Car14	AW536446|CA-XIV|Ca14	carbonic anhydrase 14	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr13-49043210-2	chr13	49042710	49043710	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290313, intron 27 of 29)	intron (NM_001290313, intron 27 of 29)	75098.0	NR_015601	68128.0	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99703015-2	chr15	99702515	99703515	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031842, intron 1 of 12)	intron (NM_031842, intron 1 of 12)	728.0	NM_031842	83797.0	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	0.0	1.0	1.5	2.0	3.0	3.5
Merged-chr6-148530467-1	chr6	148529967	148530967	+	591.0	f1_balb.idr	Intergenic	Intergenic	83842.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	4.5	3.0	0.0	0.0	8.0	3.0
Merged-chr2-90461130-2	chr2	90460630	90461630	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 7 of 23)	intron (NM_008982, intron 7 of 23)	18044.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93523841-1	chr2	93523341	93524341	+	591.0	f0_balb.idr	Intergenic	Intergenic	-60891.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0.0	4.5	0.0	1.5	0.0	3.5
Merged-chr18-80685564-2	chr18	80685064	80686064	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 2 of 9)	RLTR20A4|LTR|ERVK	22609.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143002865-2	chr7	143002365	143003365	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2181.0	NM_001128080	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21565647-2	chr19	21565147	21566147	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	87144.0	NM_025423	66206.0	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101237687-2	chr15	101237188	101238188	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-12502.0	NR_045328	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34175081-1	chr17	34174581	34175581	+	591.0	f1_balb.idr	Intergenic	RLTR20C|LTR|ERVK	12249.0	NM_013585	16912.0	Mm.390983	NM_013585	ENSMUSG00000096727	Psmb9	Lmp-2|Lmp2	proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	protein-coding	4.0	0.5	9.0	2.5	24.5	7.5
Merged-chr16-91056788-2	chr16	91056288	91057288	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163695, intron 1 of 1)	intron (NM_001163695, intron 1 of 1)	12357.0	NM_001163695	74387.0	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94190693-1	chr10	94190193	94191193	+	591.0	f1_balb.idr	exon (NM_011629, exon 12 of 14)	exon (NM_011629, exon 12 of 14)	-8316.0	NM_025551	66414.0	Mm.27886	NM_025551	ENSMUSG00000020022	Ndufa12	2410011G03Rik|AW112974	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12	protein-coding	5.0	13.0	9.0	14.0	16.0	15.0
Merged-chr2-84885487-2	chr2	84884987	84885987	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199223, intron 1 of 2)	intron (NM_199223, intron 1 of 2)	1205.0	NM_199223	269295.0	Mm.86447	NM_199223	ENSMUSG00000050896	Rtn4rl2	Ngr2|Ngrh1|Ngrl3	reticulon 4 receptor-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-100968870-1	chr14	100968370	100969370	+	591.0	f0_balb.idr	Intergenic	Intergenic	231199.0	NM_029680	76627.0	Mm.31415	NM_029680	ENSMUSG00000042888	Prr30	1700110M21Rik	proline rich 30	protein-coding	0.0	14.5	3.0	7.5	0.0	4.0
Merged-chr5-23873052-3	chr5	23872531	23873531	+	591.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16C|LTR|ERVL	20798.0	NR_028536	100217436.0		NR_028536		Snord93	Gm22397|MBII-336	small nucleolar RNA, C/D box 93	snoRNA	3.5	9.0	3.5	6.0	8.5	10.0
Merged-chr7-38188918-1	chr7	38188418	38189418	+	591.0	f1_balb.idr	intron (NM_001085385, intron 2 of 3)	ID_B1|SINE|B4	5131.0	NM_028166	72244.0	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	17.5	34.5	15.5	17.0	24.5	12.5
Merged-chr10-59894364-2	chr10	59893864	59894864	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019965, intron 6 of 8)	intron (NM_019965, intron 6 of 8)	14773.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-47432662-2	chr3	47432162	47433162	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-531880.0	NR_105800	102465199.0		NR_105800	ENSMUSG00000098417	Mir6379	Gm27730|mmu-mir-6379	microRNA 6379	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-63200455-2	chr17	63199955	63200955	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 7 of 8)	intron (NM_015794, intron 7 of 8)	112518.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90902180-1	chr5	90901680	90902680	+	591.0	f1_balb.idr	Intergenic	PB1D9|SINE|Alu	-1719.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	3.0	3.0	7.0	0.0	0.0	4.0
Merged-chr16-31704506-2	chr16	31704006	31705006	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357281, intron 1 of 22)	intron (NM_001357281, intron 1 of 22)	8958.0	NM_001357281	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55396270-2	chr12	55395770	55396770	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310583, intron 1 of 6)	intron (NM_001310583, intron 1 of 6)	-2555.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-83727407-2	chr1	83726907	83727907	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-319207.0	NM_001356547	77629.0	Mm.154303	NM_172430	ENSMUSG00000026163	Sphkap	4930544G21Rik|A930009L15Rik|AI852220|SKIP|mKIAA1678	SPHK1 interactor, AKAP domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-33040140-1	chr12	33039640	33040640	+	591.0	f1_c57bl6.idr	intron (NM_001024478, intron 16 of 19)	intron (NM_001024478, intron 16 of 19)	52735.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	3.0	16.0	7.0	0.0	2.0	0.5
Merged-chr10-122053710-1	chr10	122053210	122054210	+	591.0	f1_balb.idr	Intergenic	L1_Mus3|LINE|L1	-6395.0	NM_001081037	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119777144-2	chr8	119776644	119777644	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028883, intron 1 of 7)	intron (NM_028883, intron 1 of 7)	1272.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21127061-2	chr9	21126561	21127561	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205312, intron 3 of 24)	intron (NM_001205312, intron 3 of 24)	4214.0	NM_018793	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-30940523-2	chr9	30940023	30941023	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2039.0	NM_013906	30806.0	Mm.100582	NM_013906	ENSMUSG00000031994	Adamts8	METH-2|METH2	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-138824559-2	chr7	138824059	138825059	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21708.0	NM_001045483	69546.0	Mm.31598	NM_027115	ENSMUSG00000041775	Mapk1ip1	2310009E07Rik|AU043776|MISS	mitogen-activated protein kinase 1 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111117170-1	chr9	111116670	111117670	+	591.0	f1_balb.idr	promoter-TSS (NM_001164838)	promoter-TSS (NM_001164838)	-941.0	NM_027742	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	0.0	2.5	0.0	1.0	2.5	2.0
Merged-chr6-94282785-2	chr6	94282272	94283272	+	591.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_001029850, intron 1 of 23)	intron (NM_001029850, intron 1 of 23)	1145.0	NM_010367	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-171302469-2	chr2	171301969	171302969	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	570662.0	NM_001163686	76829.0	Mm.41633	NM_029761	ENSMUSG00000027560	Dok5	2700055C10Rik	docking protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59529520-2	chr11	59529020	59530020	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12049.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46077378-2	chr19	46076878	46077878	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039351, intron 1 of 12)	intron (NM_001039351, intron 1 of 12)	1531.0	NM_001039351	70769.0	Mm.402190	NM_053086	ENSMUSG00000015176	Nolc1	NOPP130|NOPP140|P130	nucleolar and coiled-body phosphoprotein 1	protein-coding	14.5	0.0	7.5	8.0	0.0	4.0
Merged-chr12-69497729-2	chr12	69497229	69498229	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22179.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113813883-2	chr5	113813383	113814383	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-13531.0	NM_146162	231633.0	Mm.41681	NM_146162	ENSMUSG00000054675	Tmem119	AW208946|BC025600|obif	transmembrane protein 119	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-94795490-2	chr9	94794990	94795990	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 4 of 15)	MTD|LTR|ERVL-MaLR	43661.0	NR_106116	102465763.0		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75835237-1	chr14	75834737	75835737	+	591.0	f0_balb.idr	Intergenic	Intergenic	9727.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124959489-1	chr8	124958989	124959989	+	591.0	f0_balb.idr	Intergenic	Intergenic	-10235.0	NM_053207	112405.0	Mm.140619	NM_053207	ENSMUSG00000031987	Egln1	AI503754|C1orf12|HIF-PH2|HPH-2|Hif-p4h-2|ORF13|Phd2|SM-20	egl-9 family hypoxia-inducible factor 1	protein-coding	4.5	1.5	4.0	2.5	3.0	1.5
Merged-chr18-34118648-1	chr18	34118148	34119148	+	591.0	f1_c57bl6.idr	Intergenic	MER5B|DNA|hAT-Charlie	-102336.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	10.5	45.5	41.5	2.5	24.5	32.0
Merged-chr7-127969319-2	chr7	127968819	127969819	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139149, intron 1 of 14)	intron (NM_139149, intron 1 of 14)	1840.0	NM_139149	233908.0	Mm.277680	NM_139149	ENSMUSG00000030795	Fus	D430004D17Rik|D930039C12Rik|Fus1|Tls	fused in sarcoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80386042-1	chr7	80385542	80386542	+	591.0	f1_c57bl6.idr	intron (NM_010194, intron 3 of 18)	intron (NM_010194, intron 3 of 18)	1904.0	NM_010194	14159.0	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	17.5	53.5	25.5	9.0	38.0	25.0
Merged-chr1-164781917-2	chr1	164781417	164782417	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	-14746.0	NM_019759	56429.0	Mm.28935	NM_019759	ENSMUSG00000026574	Dpt	1810032B19Rik|5033416F05Rik|EQ-1|Eq1	dermatopontin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83151594-2	chr15	83151094	83152094	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B2|LTR|ERVL	1949.0	NR_004432	104307.0	Mm.471434	NR_004432	ENSMUSG00000065176	Rnu12	-	RNA U12, small nuclear	snRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127162183-1	chr3	127161683	127162683	+	591.0	f1_balb.idr	intron (NR_105029, intron 2 of 3)	intron (NR_105029, intron 2 of 3)	878.0	NR_105029	100862268.0	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA	1.0	1.0	6.5	8.0	0.0	2.0
Merged-chr3-97950564-2	chr3	97950064	97951064	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033779, intron 1 of 1)	L1_Mur3|LINE|L1	20391.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35032550-1	chr9	35032050	35033050	+	591.0	f1_balb.idr	intron (NM_001190912, intron 14 of 15)	intron (NM_001190912, intron 14 of 15)	-84178.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	2.5	0.0	2.0	2.5	0.0	3.5
Merged-chr11-96341889-2	chr11	96341389	96342389	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001079869, intron 2 of 3)	intron (NM_001079869, intron 2 of 3)	-1880.0	NM_010458	15410.0	Mm.342481	NM_010458	ENSMUSG00000048763	Hoxb3	Hox-2.7	homeobox B3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-36821223-1	chr8	36820723	36821723	+	591.0	f1_c57bl6.idr	intron (NM_001194940, intron 4 of 17)	intron (NM_001194940, intron 4 of 17)	-88169.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	7.5	30.5	2.5	12.0	16.5	9.0
Merged-chr9-94706997-1	chr9	94706497	94707497	+	591.0	f1_c57bl6.idr	intron (NM_177909, intron 2 of 15)	intron (NM_177909, intron 2 of 15)	37105.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	0.0	2.5	1.5	0.5	0.0	3.0
Merged-chr6-17810577-2	chr6	17810077	17811077	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	intron (NM_022332, intron 1 of 15)	61407.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-28757948-1	chr13	28757448	28758448	+	591.0	f0_balb.idr	intron (NR_045053, intron 3 of 8)	intron (NR_045053, intron 3 of 8)	-47075.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-60264418-1	chr5	60263918	60264918	+	591.0	f1_balb.idr	Intergenic	RLTR13D6|LTR|ERVK	-278416.0	NR_040682	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	6.0	5.0	4.5	0.0	1.0	3.5
Merged-chr8-105698708-2	chr8	105698208	105699208	+	591.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357333)	TTS (NM_001357333)	-2440.0	NM_001047436	56513.0	Mm.472753	NM_019695	ENSMUSG00000005699	Pard6a	0710008C04Rik|2610010A15Rik|PAR-6A|PAR6alpha|Par-6|Par6|Par6c|TAX40|Tip-40	par-6 family cell polarity regulator alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116124396-1	chr3	116123896	116124896	+	591.0	f0_balb.idr	exon (NM_011693, exon 4 of 9)	exon (NM_011693, exon 4 of 9)	5292.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	5.0	16.5	3.5	15.0	1.0	9.0
Merged-chr7-81839956-1	chr7	81839456	81840456	+	591.0	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10525.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	0.0	1.0	1.5	1.5	0.0	0.0
Merged-chr1-195037203-2	chr1	195036703	195037703	+	591.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029745)	promoter-TSS (NR_029745)	163.0	NR_029809	723963.0		NR_029809	ENSMUSG00000065412	Mir29b-2	Mirn29b-2|mir-29b-2	microRNA 29b-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-39940628-2	chr16	39940128	39941128	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-43736.0	NM_001361282	268890.0	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Gm29907|Lam|Lamp	limbic system-associated membrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121053177-1	chr14	121052677	121053677	+	591.0	f1_c57bl6.idr	intron (NM_134082, intron 1 of 26)	intron (NM_134082, intron 1 of 26)	17603.0	NM_134082	223254.0	Mm.223980	NM_134082	ENSMUSG00000025555	Farp1	AW228844|BC030329|Cdep	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	protein-coding	11.0	17.0	16.0	0.0	1.0	2.0
Merged-chr8-122704770-2	chr8	122704270	122705270	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-5661.0	NM_009824	12398.0	Mm.194339	NM_009824	ENSMUSG00000006362	Cbfa2t3	A630044F12Rik|AI465270|AW229127|Cbfa2t3h|ETO-2|Eto2|MTGR2	core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	protein-coding	1.0	0.0	0.0	2.0	6.0	1.5
Merged-chr9-35156572-1	chr9	35156072	35157072	+	591.0	f1_c57bl6.idr	intron (NM_027030, intron 2 of 5)	intron (NM_027030, intron 2 of 5)	19415.0	NM_027030	69305.0	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	0.0	0.5	1.5	2.5	0.0	0.5
Merged-chr15-62169808-1	chr15	62169308	62170308	+	591.0	f0_c57.idr	intron (NR_003368, intron 4 of 8)	intron (NR_003368, intron 4 of 8)	49643.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-142144295-2	chr4	142143795	142144795	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109684, intron 5 of 6)	intron (NM_001109684, intron 5 of 6)	-59991.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	0.0	1.0	1.5	0.0	6.0	0.0
Merged-chr13-100448828-2	chr13	100448328	100449328	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008670, intron 1 of 15)	MTD|LTR|ERVL-MaLR	4036.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135600220-1	chr3	135599720	135600720	+	591.0	f1_c57bl6.idr	intron (NM_008689, intron 17 of 24)	intron (NM_008689, intron 17 of 24)	91327.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	3.0	6.0	3.5	6.0	9.5	2.0
Merged-chr6-59177269-2	chr6	59176769	59177769	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR15|LTR|ERVK	-31601.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138126483-1	chr1	138125983	138126983	+	591.0	f0_balb.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	48643.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24208232-1	chr5	24207732	24208732	+	591.0	f1_c57bl6.idr	Intergenic	Intergenic	43269.0	NM_001346582	231042.0	Mm.45513	NM_153092	ENSMUSG00000048439	Nupl2	AV116043|CG1|NLP-1|Nlp1	nucleoporin like 2	protein-coding	1.0	7.5	8.5	7.5	1.5	0.0
Merged-chr10-99393775-1	chr10	99393275	99394275	+	591.0	f0_balb.idr	Intergenic	Intergenic	130544.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97553080-1	chr11	97552580	97553580	+	591.0	f1_c57bl6.idr	intron (NM_018873, intron 1 of 19)	intron (NM_018873, intron 1 of 19)	22046.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	2.0	0.0	1.5	0.0	0.0	0.0
Merged-chr3-59207310-1	chr3	59206810	59207810	+	591.0	f0_balb.idr	TTS (NM_028808)	TTS (NM_028808)	3572.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152116134-2	chr1	152115634	152116634	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25814.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32944095-2	chr19	32943595	32944595	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	186518.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83878699-1	chr7	83878199	83879199	+	591.0	f1_balb.idr	Intergenic	Intergenic	5642.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	15.0	26.5	16.0	11.5	36.0	27.0
Merged-chr7-19678330-2	chr7	19677830	19678830	+	591.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277944)	promoter-TSS (NM_001277944)	-389.0	NM_001277944	11813.0	Mm.28394	NM_001277944	ENSMUSG00000002992	Apoc2	apo-CII|apoC-II	apolipoprotein C-II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84803867-1	chr15	84803367	84804367	+	591.0	f1_c57bl6.idr	intron (NM_001356573, intron 4 of 12)	intron (NM_001356573, intron 4 of 12)	51232.0	NM_001356573	271305.0	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	3.5	9.5	5.0	5.0	4.5	1.5
Merged-chr15-60760132-2	chr15	60759621	60760621	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62844.0	NR_030696	320469.0	Mm.230853	NM_177166		9930014A18Rik	-	RIKEN cDNA 9930014A18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-140950747-2	chr7	140950247	140951247	+	591.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053088)	promoter-TSS (NM_053088)	-508.0	NM_053088	73835.0	Mm.389989	NM_053088	ENSMUSG00000025489	Ifitm5	1110003J06Rik|AW213665|Bril|DSPA1|Hrmp1|Hrtm1	interferon induced transmembrane protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-141454392-2	chr1	141453892	141454892	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-797990.0	NR_040604	75910.0	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-9746769-4	chr1	9746319	9747319	+	591.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040462)	promoter-TSS (NR_040462)	-829.0	NR_040462	73331.0	Mm.460470	NR_040462		1700034P13Rik	-	RIKEN cDNA 1700034P13 gene	ncRNA	11.5	17.5	7.5	20.0	13.5	10.5
Merged-chr11-116061900-2	chr11	116061400	116062400	+	591.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172569)	TTS (NM_172569)	16061.0	NM_001009573	70450.0	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-48977501-2	chr13	48977001	48978001	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9389.0	NR_015601	68128.0	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-56058560-1	chr12	56058060	56059060	+	591.0	f1_balb.idr	Intergenic	Intergenic	-194683.0	NR_045048	100503961.0	Mm.136732	NR_045048	ENSMUSG00000112164	Gm19990	-	predicted gene, 19990	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-103269496-1	chr10	103268996	103269996	+	591.0	f1_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	-33174.0	NM_001361058	74978.0	Mm.483817	NM_029134	ENSMUSG00000019892	Lrriq1	4930503E15Rik|Gm1557	leucine-rich repeats and IQ motif containing 1	protein-coding	0.5	0.0	0.0	8.5	0.0	0.0
Merged-chr8-82369867-1	chr8	82369367	82370367	+	591.0	f0_balb.idr	intron (NM_008357, intron 2 of 7)	intron (NM_008357, intron 2 of 7)	32719.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	22.5	14.5	21.5	34.5	45.5	18.5
Merged-chr15-51683660-1	chr15	51683160	51684160	+	591.0	f0_balb.idr	Intergenic	Intergenic	181801.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	9.5	2.5	7.5	12.5	1.5	0.0
Merged-chr11-117813610-2	chr11	117813110	117814110	+	591.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009304, exon 4 of 4)	3' UTR (NM_009304, exon 4 of 4)	3943.0	NM_009304	20973.0	Mm.468228	NM_009304	ENSMUSG00000048277	Syngr2	Clast2|cellugyrin	synaptogyrin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76423257-1	chr11	76422757	76423757	+	591.0	f1_c57bl6.idr	intron (NM_001346670, intron 18 of 21)	intron (NM_001346670, intron 18 of 21)	16114.0	NM_019818	56322.0	Mm.18803	NM_019818	ENSMUSG00000020843	Timm22	Tim22	translocase of inner mitochondrial membrane 22	protein-coding	1.0	0.0	1.0	0.5	0.0	4.0
Merged-chr2-173740493-2	chr2	173739993	173740993	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019806, intron 1 of 5)	intron (NM_019806, intron 1 of 5)	2922.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60825925-1	chr2	60825425	60826425	+	591.0	f0_balb.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	55513.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-19201429-2	chr18	19200929	19201929	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	800668.0	NM_007882	13507.0	Mm.89935	NM_007882	ENSMUSG00000059898	Dsc3	5430426I24Rik	desmocollin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108667880-1	chr6	108667380	108668380	+	591.0	f0_balb.idr	TTS (NM_011498)	TTS (NM_011498)	-6946.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	3.5	16.0	0.0	3.5	11.5	0.0
Merged-chr10-61980636-3	chr10	61980126	61981126	+	591.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1518.0	NM_007731	12817.0	Mm.300931	NM_007731	ENSMUSG00000058806	Col13a1	-	collagen, type XIII, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124454942-2	chr5	124454442	124455442	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310725, intron 4 of 6)	intron (NM_001310725, intron 4 of 6)	8238.0	NM_001310727	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58454652-1	chr16	58454152	58455152	+	591.0	f0_balb.idr	intron (NM_001356484, intron 9 of 15)	intron (NM_001356484, intron 9 of 15)	46117.0	NM_028523	73379.0	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107307838-2	chr11	107307338	107308338	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	L1MB7|LINE|L1	-118457.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19476287-2	chr7	19475787	19476787	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-17793.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110636084-1	chr5	110635584	110636584	+	591.0	f0_c57.idr	Intergenic	Intergenic	17298.0	NM_153570	100608.0	Mm.29960	NM_153570	ENSMUSG00000033294	Noc4l	AI326906	NOC4 like	protein-coding	1.0	4.0	1.5	0.0	4.0	0.0
Merged-chr10-66932161-2	chr10	66931661	66932661	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-11777.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114882620-1	chr5	114882120	114883120	+	591.0	f1_c57bl6.idr	intron (NM_026263, intron 11 of 11)	intron (NM_026263, intron 11 of 11)	-14314.0	NM_011854	23962.0	Mm.228363	NM_011854	ENSMUSG00000029561	Oasl2	M1204|Mmu-OASL|Oasl	2'-5' oligoadenylate synthetase-like 2	protein-coding	0.0	0.0	1.0	5.0	0.5	0.5
Merged-chr8-82776727-1	chr8	82776227	82777227	+	591.0	f1_balb.idr	Intergenic	Intergenic	-2601.0	NM_145600	30932.0	Mm.269248	NM_145600	ENSMUSG00000031711	Zfp330	BC008086|Noa36|Znf330	zinc finger protein 330	protein-coding	7.0	2.0	1.0	0.0	2.5	0.0
Merged-chr10-84573371-1	chr10	84572871	84573871	+	591.0	f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-3576.0	NM_146008	216198.0	Mm.296142	NM_146008	ENSMUSG00000020034	Tcp11l2	E430026E19Rik	t-complex 11 (mouse) like 2	protein-coding	3.5	3.5	3.0	4.0	2.0	5.0
Merged-chr7-83888029-1	chr7	83887529	83888529	+	591.0	f1_balb.idr	Intergenic	B2_Mm2|SINE|B2	-3688.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	2.0	0.0	0.0	1.0	1.5	0.5
Merged-chr9-108988041-2	chr9	108987541	108988541	+	591.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145077)	TTS (NM_145077)	1878.0	NM_145077	171530.0	Mm.388865	NM_145077	ENSMUSG00000049699	Ucn2	Ucn II|Ucn-2|ucn-II	urocortin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30718746-1	chr14	30718246	30719246	+	591.0	f1_balb.idr	intron (NM_001166532, intron 1 of 20)	Lx3A|LINE|L1	3131.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	0.0	0.0	1.5	5.0	7.0	8.0
Merged-chr19-6336086-2	chr19	6335586	6336586	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168489, intron 2 of 9)	intron (NM_001168489, intron 2 of 9)	1047.0	NM_008583	17283.0	Mm.12917	NM_008583	ENSMUSG00000024947	Men1	AW045611	multiple endocrine neoplasia 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143820892-3	chr5	143820393	143821393	+	591.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50969.0	NM_013557	15467.0	Mm.389709	NM_013557	ENSMUSG00000029613	Eif2ak1	HCR|Hri	eukaryotic translation initiation factor 2 alpha kinase 1	protein-coding	12.0	3.0	8.5	6.5	0.0	3.0
Merged-chr2-181454580-2	chr2	181454080	181455080	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028125, intron 1 of 2)	intron (NM_028125, intron 1 of 2)	4846.0	NM_028125	72147.0	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136169093-2	chr1	136168593	136169593	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 28 of 34)	intron (NM_001039472, intron 28 of 34)	37703.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83077869-1	chr6	83077369	83078369	+	591.0	f0_balb.idr	promoter-TSS (NM_197992)	promoter-TSS (NM_197992)	-521.0	NM_197992	69837.0	Mm.12261	NM_197992	ENSMUSG00000069678	Pcgf1	2010002K04Rik|AU024121|Nspc1	polycomb group ring finger 1	protein-coding	9.5	1.5	3.0	5.0	11.5	7.0
Merged-chr10-78432208-2	chr10	78431708	78432708	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2591.0	NR_105837	102465221.0		NR_105837	ENSMUSG00000098932	Mir6410	Gm27916|mmu-mir-6410	microRNA 6410	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27940308-2	chr15	27939808	27940808	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	85540.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-69395423-1	chr17	69394923	69395923	+	591.0	f1_c57bl6.idr	Intergenic	Intergenic	11619.0	NM_009547	22666.0	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding	2.5	0.5	3.0	0.0	0.0	2.0
Merged-chr3-146109114-1	chr3	146108614	146109614	+	591.0	f0_balb.idr	Intergenic	B4|SINE|B4	-1078.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	1.0	11.0	12.5	0.5	15.5	4.0
Merged-chr17-26450051-1	chr17	26449551	26450551	+	591.0	f1_balb.idr	Intergenic	Intergenic	35086.0	NM_001081656	240055.0	Mm.133211	NM_001081656	ENSMUSG00000034413	Neurl1b	C230078M08Rik|EG240055	neuralized E3 ubiquitin protein ligase 1B	protein-coding	0.0	0.0	0.0	5.0	0.0	0.0
Merged-chr16-38566402-2	chr16	38565902	38566902	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026407, intron 2 of 8)	7SK|RNA|RNA	3588.0	NM_026407	67846.0	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37678479-2	chr1	37677979	37678979	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028096, intron 1 of 9)	intron (NM_028096, intron 1 of 9)	41332.0	NM_028096	72097.0	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87444952-2	chr11	87444452	87445452	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	17361.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20152527-2	chr18	20152027	20153027	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37754.0	NM_013504	13505.0	Mm.33740	NM_013504	ENSMUSG00000044322	Dsc1	1110020A10Rik|AI507491	desmocollin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127705915-2	chr7	127705415	127706415	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347652, intron 4 of 5)	intron (NM_001347652, intron 4 of 5)	-2572.0	NR_030428	791073.0		NR_030428	ENSMUSG00000076454	Mir762	Mirn762|mir-762|mmu-mir-762	microRNA 762	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86405632-2	chr15	86405132	86406132	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358062, intron 8 of 9)	intron (NM_001358062, intron 8 of 9)	127957.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-51754631-2	chr5	51754131	51755131	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-186906.0	NR_132764	19017.0	Mm.259072	NM_008904	ENSMUSG00000029167	Ppargc1a	A830037N07Rik|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-28635323-1	chr12	28634823	28635823	+	591.0	f0_balb.idr	intron (NM_011300, intron 3 of 6)	intron (NM_011300, intron 3 of 6)	630.0	NM_011300	20115.0	Mm.279839	NM_011300	ENSMUSG00000061477	Rps7	Mtu|Rps7A|S7	ribosomal protein S7	protein-coding	65.0	131.0	127.5	38.0	101.0	111.5
Merged-chr5-146300508-2	chr5	146300008	146301008	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153599, intron 12 of 12)	intron (NM_153599, intron 12 of 12)	69258.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54957511-1	chr12	54957011	54958011	+	591.0	f1_balb.idr	intron (NM_013815, intron 3 of 26)	intron (NM_013815, intron 3 of 26)	28825.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	0.0	0.5	0.5	0.0	1.0	0.0
Merged-chr5-142903207-1	chr5	142902707	142903707	+	591.0	f0_c57.idr	TTS (NM_007393)	TTS (NM_007393)	3547.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144070762-2	chr2	144070262	144071262	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001044750, intron 2 of 2)	intron (NM_001044750, intron 2 of 2)	37660.0	NM_207275	403171.0	Mm.389362	NM_207275	ENSMUSG00000037307	Banf2	4930517K23Rik|Baf-L|Baf-like|Gm115	barrier to autointegration factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-67112194-2	chr11	67111694	67112694	+	590.866699	f1_balb.idr|f1_c57bl6.idr	TTS (NR_038055)	TTS (NR_038055)	7886.0	NR_038055	74184.0	Mm.162554	NR_038055	ENSMUSG00000087410	2310065F04Rik	linc-Myh	RIKEN cDNA 2310065F04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-68927137-2	chr8	68926648	68927648	+	590.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	46593.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	19.5	81.5	47.0	15.0	56.0	33.5
Merged-chr12-8311343-2	chr12	8310843	8311843	+	590.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2090.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84866329-2	chr2	84865829	84866829	+	590.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	20363.0	NM_199223	269295.0	Mm.86447	NM_199223	ENSMUSG00000050896	Rtn4rl2	Ngr2|Ngrh1|Ngrl3	reticulon 4 receptor-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-57073008-2	chr19	57072544	57073544	+	590.833374	f0_balb.idr|f1_balb.idr	intron (NM_001103177, intron 8 of 21)	intron (NM_001103177, intron 8 of 21)	45980.0	NM_001347459	226251.0	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	15.0	17.5	4.0	10.5	3.0	7.5
Merged-chr3-136165459-2	chr3	136164956	136165956	+	590.75	f0_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 7 of 16)	intron (NM_001033350, intron 7 of 16)	160610.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34788096-2	chr2	34787596	34788596	+	590.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_145522, intron 4 of 7)	intron (NM_145522, intron 4 of 7)	11816.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97395574-2	chr6	97395074	97396074	+	590.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	intron (NM_145148, intron 6 of 23)	63712.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4262328-2	chr19	4261828	4262828	+	590.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001356620, exon 14 of 14)	3' UTR (NM_001356620, exon 14 of 14)	1550.0	NR_105951	102465595.0		NR_105951	ENSMUSG00000099290	Mir6985	Gm27719|mmu-mir-6985	microRNA 6985	ncRNA	8.0	18.0	14.0	14.0	19.5	13.5
Merged-chr10-77082631-2	chr10	77082131	77083131	+	590.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109991, intron 5 of 40)	intron (NM_001109991, intron 5 of 40)	31074.0	NM_001109991	12822.0	Mm.4352	NM_009929	ENSMUSG00000001435	Col18a1	-	collagen, type XVIII, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115895588-2	chr11	115895103	115896103	+	590.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_130454, intron 12 of 18)	intron (NM_130454, intron 12 of 18)	-4536.0	NM_183259	66528.0	Mm.275740	NM_183259	ENSMUSG00000048442	Smim5	2210020M01Rik	small integral membrane protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128413626-2	chr10	128413161	128414161	+	590.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_026259, intron 1 of 7)	intron (NM_026259, intron 1 of 7)	2045.0	NM_026259	67588.0	Mm.294120	NM_026259	ENSMUSG00000025373	Rnf41	2210404G21Rik|4930511A05Rik|4933415P08Rik|D10Ertd722e|FLRF|Nrdp1	ring finger protein 41	protein-coding	0.0	5.5	16.5	2.0	1.5	2.5
Merged-chr15-81302739-2	chr15	81302239	81303239	+	590.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-50877.0	NR_077230	78102.0	Mm.296832	NR_077229	ENSMUSG00000115970	8430426J06Rik	-	RIKEN cDNA 8430426J06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84530718-3	chr2	84530231	84531231	+	590.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23858.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	8.5	23.5	6.5	4.5	29.0	13.5
Merged-chr2-160359095-1	chr2	160358595	160359595	+	590.666687	f0_balb.idr	Intergenic	Intergenic	7970.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0.0	4.0	4.5	0.5	9.0	0.5
Merged-chr10-121350562-2	chr10	121350064	121351064	+	590.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361015, intron 1 of 12)	intron (NM_001361015, intron 1 of 12)	1080.0	NM_001361015	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	2.0	0.0	4.0	2.5	0.0	5.0
Merged-chr18-5856392-2	chr18	5855892	5856892	+	590.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	263745.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	0.0	0.0	0.0	4.0	0.0	2.0
Merged-chr4-87893156-4	chr4	87892654	87893654	+	590.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027326, intron 2 of 10)	intron (NM_027326, intron 2 of 10)	-86831.0	NM_029931	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71252546-5	chr17	71252088	71253088	+	590.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001357336, exon 8 of 8)	3' UTR (NM_001357336, exon 8 of 8)	47934.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	11.5	5.0	3.5	2.5	9.5	8.5
Merged-chr2-128804873-2	chr2	128804367	128805367	+	590.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13436.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	16.5	15.5	19.0	7.5	21.5	17.5
Merged-chr7-126181317-2	chr7	126180817	126181817	+	590.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 1 of 23)	intron (NM_028816, intron 1 of 23)	19184.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37047260-3	chr9	37046761	37047761	+	590.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 2 of 12)	intron (NM_001029838, intron 2 of 12)	100061.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-35168609-2	chr4	35168109	35169109	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11125.0	NM_178061	214944.0	Mm.32968	NM_178061	ENSMUSG00000073910	Mob3b	8430436F23Rik|A430018A01Rik|Mobkl2b	MOB kinase activator 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166630517-2	chr2	166630017	166631017	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 5 of 39)	intron (NM_177782, intron 5 of 39)	65995.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74385521-2	chr1	74385021	74386021	+	590.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013612, exon 15 of 15)	3' UTR (NM_013612, exon 15 of 15)	-6088.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-83729932-2	chr2	83729432	83730432	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008402, intron 1 of 29)	intron (NM_008402, intron 1 of 29)	5535.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	3.5	8.5	6.5	8.5	1.0	3.0
Merged-chr14-122513202-2	chr14	122512702	122513702	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 1 of 24)	intron (NR_153443, intron 1 of 24)	-21126.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44375612-2	chr11	44375116	44376116	+	590.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-24447.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	9.5	17.0	3.0	5.5	24.5	6.0
Merged-chr11-99081255-2	chr11	99080755	99081755	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172564, intron 2 of 12)	intron (NM_172564, intron 2 of 12)	8051.0	NM_172564	217169.0	Mm.262067	NM_172564	ENSMUSG00000017607	Tns4	9930017A07Rik|AA589547|AU016405|Cten	tensin 4	protein-coding	0.0	0.0	0.0	0.0	5.5	0.0
Merged-chr3-135386990-2	chr3	135386490	135387490	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028946, intron 8 of 12)	intron (NM_028946, intron 8 of 12)	36443.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-62457616-2	chr14	62457116	62458116	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1327.0	NM_172810	239134.0	Mm.236557	NM_172810	ENSMUSG00000021933	Gucy1b2	B930025B03|GC-SB2	guanylate cyclase 1, soluble, beta 2	protein-coding	0.0	0.0	0.0	3.0	0.5	0.0
Merged-chr1-64909100-1	chr1	64908600	64909600	+	590.5	f0_balb.idr	intron (NM_001039493, intron 3 of 7)	MER21B|LTR|ERVL	47724.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-189659400-2	chr1	189658900	189659900	+	590.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081363, exon 12 of 18)	exon (NM_001081363, exon 12 of 18)	28686.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7482057-2	chr19	7481603	7482603	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003934, intron 1 of 8)	intron (NM_001003934, intron 1 of 8)	1188.0	NM_001271486	20168.0	Mm.246990	NM_053076	ENSMUSG00000024758	Rtn3	RTN3-A1	reticulon 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135688017-2	chr3	135687517	135688517	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 1 of 24)	intron (NM_008689, intron 1 of 24)	3530.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50115955-2	chr6	50115451	50116451	+	590.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001361248, intron 1 of 13)	intron (NM_001361248, intron 1 of 13)	5091.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	27.5	63.5	46.5	13.0	66.5	54.0
Merged-chr10-93267730-2	chr10	93267257	93268257	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001322265, intron 2 of 4)	intron (NM_001322265, intron 2 of 4)	43402.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	18.0	11.5	8.5	15.5	26.5	30.0
Merged-chr8-13157933-2	chr8	13157433	13158433	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1228.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-179859324-2	chr1	179858824	179859824	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55309.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95698988-2	chr16	95698488	95699488	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3419.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-52146844-2	chr1	52146344	52147344	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205313, intron 15 of 24)	intron (NM_001205313, intron 15 of 24)	27222.0	NM_001205313	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113014470-2	chr5	113013970	113014970	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	1068.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-44754753-2	chr4	44754253	44755253	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1806.0	NM_138590	319885.0	Mm.331576	NM_138590	ENSMUSG00000035649	Zcchc7	4930572I07Rik|D4Wsu132e	zinc finger, CCHC domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-151563286-2	chr2	151562786	151563786	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9337.0	NM_145535	228765.0	Mm.32068	NM_145535	ENSMUSG00000027456	Sdcbp2	-	syndecan binding protein (syntenin) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50193890-2	chr17	50193390	50194390	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3393.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-136791338-2	chr2	136790838	136791838	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME3A|LINE|L1	77652.0	NM_001355254	20614.0	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-42995471-2	chr9	42994971	42995971	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359232, intron 22 of 40)	HAL1|LINE|L1	-51100.0	NM_175481	110637.0	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	0.0	9.5	12.5	0.0	7.0	18.0
Merged-chr6-72551370-2	chr6	72550870	72551870	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271395, intron 1 of 9)	intron (NM_001271395, intron 1 of 9)	1723.0	NM_001271395	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136238170-2	chr4	136237670	136238670	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008232, intron 12 of 24)	intron (NM_001008232, intron 12 of 24)	-9787.0	NM_011542	21401.0	Mm.112	NM_011542	ENSMUSG00000001604	Tcea3	S-II|SII-K1	transcription elongation factor A (SII), 3	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr1-151433033-2	chr1	151432533	151433533	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026876, intron 1 of 14)	intron (NM_026876, intron 1 of 14)	4491.0	NM_001357570	98685.0	Mm.289373	NM_026876	ENSMUSG00000053286	Trmt1l	1190005F20Rik|AW226554|C1orf25|Trm1-like|Trm1l	tRNA methyltransferase 1 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-112104183-2	chr7	112103683	112104683	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133758, intron 23 of 27)	intron (NM_133758, intron 23 of 27)	54513.0	NM_001360260	50781.0	Mm.55143	NM_015814	ENSMUSG00000030772	Dkk3	AW061014|C87148|dkk-3|mDkk-3	dickkopf WNT signaling pathway inhibitor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119341656-2	chr8	119341156	119342156	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2882.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136237806-2	chr5	136237306	136238306	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302938, intron 1 of 8)	intron (NM_001302938, intron 1 of 8)	7134.0	NM_001302939	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61832630-2	chr11	61832130	61833130	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013881, intron 7 of 26)	ORR1E|LTR|ERVL-MaLR	22462.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-40476835-2	chr18	40476335	40477335	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026135, intron 1 of 1)	URR1A|DNA|hAT-Charlie	218474.0	NM_026135	383348.0	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91883123-2	chr2	91882623	91883623	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080754, intron 13 of 18)	B1_Mur2|SINE|Alu	-39066.0	NM_007699	12672.0	Mm.330405	NM_007699	ENSMUSG00000040495	Chrm4	Chrm-4|M4	cholinergic receptor, muscarinic 4	protein-coding	0.0	5.0	1.5	1.0	6.0	0.0
Merged-chr4-149322515-2	chr4	149322015	149323015	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12124.0	NR_131918	74310.0	Mm.440455	NR_131918	ENSMUSG00000085286	Ube4bos3	1700121F15Rik	ubiquitination factor E4B, opposite strand 3	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108727623-2	chr3	108727123	108728123	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-5324.0	NM_029522	76123.0	Mm.226941	NM_029522	ENSMUSG00000027883	Gpsm2	6230410J09Rik|LGN|Pins	G-protein signalling modulator 2 (AGS3-like, C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90492803-2	chr2	90492303	90493303	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-13629.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114856903-2	chr5	114856403	114857403	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026263, intron 1 of 11)	intron (NM_026263, intron 1 of 11)	3189.0	NM_026263	67593.0	Mm.251409	NM_026263	ENSMUSG00000029564	4930519G04Rik	1700014B12Rik	RIKEN cDNA 4930519G04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80425478-2	chr10	80424978	80425978	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164153, intron 3 of 18)	intron (NM_001164153, intron 3 of 18)	8175.0	NM_001164150	21423.0	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-10047269-2	chr2	10046769	10047769	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027748, intron 1 of 6)	intron (NM_027748, intron 1 of 6)	1340.0	NM_027748	209361.0	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78298379-2	chr17	78297879	78298879	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 4 of 16)	intron (NM_015800, intron 4 of 16)	98131.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38221108-2	chr16	38220608	38221608	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 10 of 11)	ORR1C2|LTR|ERVL-MaLR	73716.0	NM_010936	18171.0	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59596973-2	chr2	59596473	59597473	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15069.0	NM_198294	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-117027392-2	chr13	117026892	117027892	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1876.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82144445-2	chr15	82143945	82144945	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2824.0	NM_033218	20788.0	Mm.38016	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121080868-2	chr14	121080368	121081368	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134082, intron 1 of 26)	MTC|LTR|ERVL-MaLR	45294.0	NM_134082	223254.0	Mm.223980	NM_134082	ENSMUSG00000025555	Farp1	AW228844|BC030329|Cdep	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62190196-2	chr18	62189696	62190696	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10096.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19123295-2	chr7	19122795	19123795	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175530, intron 1 of 1)	RLTR22_Mus|LTR|ERVK	3436.0	NM_175530	243867.0	Mm.230830	NM_175530	ENSMUSG00000050428	Fbxo46	20D7-FC4|4932704E22Rik|Fbxo34l	F-box protein 46	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181867103-2	chr2	181866603	181867603	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025901, intron 2 of 2)	B3|SINE|B2	2743.0	NM_025901	67005.0	Mm.271986	NM_025901	ENSMUSG00000038628	Polr3k	12.3kDa|1500004O14Rik|AI196849|AU014893|C11|RPC10|RPC11	polymerase (RNA) III (DNA directed) polypeptide K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72261069-2	chr5	72260569	72261569	+	590.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_153389, exon 11 of 23)	exon (NM_153389, exon 11 of 23)	57726.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-10541412-2	chr11	10540912	10541912	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-572604.0	NM_177033	319922.0	Mm.337851	NM_177033	ENSMUSG00000050830	Vwc2	A930041G11Rik|G11|PSST739|UNQ739|cradin	von Willebrand factor C domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95196773-2	chr4	95196273	95197273	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-144551.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88563643-2	chr5	88563143	88564143	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-1397.0	NM_001289774	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-136690831-2	chr3	136690331	136691331	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	20765.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52630422-2	chr13	52629922	52630922	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 7 of 13)	intron (NM_011518, intron 7 of 13)	33540.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111825602-2	chr8	111825102	111826102	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011801, intron 5 of 6)	intron (NM_011801, intron 5 of 6)	28708.0	NM_011801	23837.0	Mm.279437	NM_011801	ENSMUSG00000031954	Cfdp1	AA408409|Bcnt|Bucentaur|Cfdp|cp27	craniofacial development protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-57998345-2	chr19	57997845	57998845	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181415, intron 27 of 28)	intron (NM_181415, intron 27 of 28)	-52822.0	NR_049196	100885835.0		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6946908-2	chr19	6946408	6947408	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285453, intron 2 of 3)	PB1|SINE|Alu	4346.0	NM_001285453	12015.0	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119976590-2	chr9	119976090	119977090	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357562, intron 2 of 4)	PB1D9|SINE|Alu	6433.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-36423307-2	chr14	36422807	36423807	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3A|LTR|ERVK	328342.0	NM_175008	218921.0	Mm.212464	NM_175008	ENSMUSG00000096405	4930474N05Rik	-	RIKEN cDNA 4930474N05 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180120694-2	chr2	180120194	180121194	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144500, intron 1 of 13)	intron (NM_144500, intron 1 of 13)	1328.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117478606-2	chr8	117478106	117479106	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19341.0	NR_106046	102465653.0		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46888239-2	chr8	46887739	46888739	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98648.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84885428-2	chr1	84884928	84885928	+	590.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_025386, intron 2 of 3)	B3|SINE|B2	45587.0	NM_025386	66153.0	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75795110-4	chr10	75794614	75795614	+	590.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008185, intron 2 of 4)	RLTR28|LTR|ERVL	2617.0	NM_001358778	14871.0	Mm.2746	NM_008185	ENSMUSG00000001663	Gstt1	AI255817|Gstt1-1	glutathione S-transferase, theta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-46926470-3	chr9	46925973	46926973	+	590.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015605, exon 4 of 4)	non-coding (NR_015605, exon 4 of 4)	12870.0	NR_015605	73040.0	Mm.265384	NR_015605	ENSMUSG00000099696	2900052N01Rik	AU067665	RIKEN cDNA 2900052N01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25517308-3	chr14	25516782	25517782	+	590.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 2 of 23)	intron (NM_183208, intron 2 of 23)	-17157.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0.0	0.0	0.0	0.0	4.0	1.0
Merged-chr5-137789262-2	chr5	137788762	137789762	+	590.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005426, intron 1 of 16)	intron (NM_001005426, intron 1 of 16)	1460.0	NM_001005426	381678.0	Mm.332765	NM_001005426	ENSMUSG00000037108	Zcwpw1	Gm1053	zinc finger, CW type with PWWP domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5634881-2	chr17	5634381	5635381	+	590.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	142281.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84710371-2	chr1	84709871	84710871	+	590.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14150.0	NM_152915	227325.0	Mm.292560	NM_152915	ENSMUSG00000036766	Dner	A930026D19Rik|BET|Bret	delta/notch-like EGF repeat containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-64518557-2	chr11	64518057	64519057	+	590.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_178870, intron 1 of 1)	intron (NM_178870, intron 1 of 1)	-81883.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	9.5	3.5	2.0	1.0	2.0	3.5
Merged-chr19-7311379-2	chr19	7310879	7311879	+	590.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080388, intron 1 of 16)	intron (NM_001080388, intron 1 of 16)	-15932.0	NM_001080390	13728.0	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73457138-2	chr15	73456638	73457638	+	590.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33947.0	NM_001358045	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-64901236-3	chr14	64900750	64901750	+	590.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 2 of 9)	intron (NM_177338, intron 2 of 9)	48607.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	8.5	25.5	28.5	7.5	6.5	8.5
Merged-chr10-24868683-2	chr10	24868183	24869183	+	590.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID2|SINE|ID	-1303.0	NM_001166416	70208.0	Mm.28020	NM_027347	ENSMUSG00000019984	Med23	130kDa|3000002A17Rik|Crsp3|ESTM7|Sur2|X83317|mKIAA1216	mediator complex subunit 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73063404-1	chr15	73062904	73063904	+	590.0	f1_c57bl6.idr	Intergenic	Intergenic	-2200.0	NM_001164643	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	0.0	6.5	1.0	0.0	3.5	1.0
Merged-chr11-67100293-2	chr11	67099793	67100793	+	590.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105888)	TTS (NR_105888)	489.0	NR_105888	102466766.0		NR_105888	ENSMUSG00000098855	Mir6923	Gm27312|mmu-mir-6923	microRNA 6923	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143026922-2	chr7	143026422	143027422	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110354, intron 4 of 4)	MTD|LTR|ERVL-MaLR	21263.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr16-36655510-2	chr16	36655010	36656010	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	10567.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-83117370-1	chr13	83116870	83117870	+	590.0	f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-386664.0	NM_001347572	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0.0	0.0	0.0	0.0	3.0	2.0
Merged-chr8-76046518-2	chr8	76046018	76047018	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	597824.0	NM_001164235	71831.0	Mm.443238	NM_027944	ENSMUSG00000031620	Iqcm	1700007B14Rik	IQ motif containing M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126479234-2	chr7	126478734	126479734	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4104.0	NM_011363	20399.0	Mm.8538	NM_011363	ENSMUSG00000030733	Sh2b1	AI425885|C530001K22Rik|Irip|Psm|SH2-B|SH2-Bb|Sh2bpsm1|mKIAA1299	SH2B adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-24205677-2	chr15	24205177	24206177	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1-int|LTR|ERVL-MaLR	1169214.0	NM_001081299	320865.0	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l|Tg(GFAP-APOE_i4)1Hol	cadherin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119249585-1	chr11	119249085	119250085	+	590.0	f1_balb.idr	intron (NM_175430, intron 11 of 18)	PB1D9|SINE|Alu	-18378.0	NM_001159324	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	0.0	3.5	0.0	0.0	0.5	0.0
Merged-chr8-126582065-1	chr8	126581565	126582565	+	590.0	f1_balb.idr	Intergenic	Intergenic	11371.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	1.5	1.0	4.0	2.5	0.0	2.5
Merged-chr4-67477724-1	chr4	67477224	67478224	+	590.0	f0_balb.idr	Intergenic	Intergenic	650173.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101676691-1	chr13	101676191	101677191	+	590.0	f1_c57bl6.idr	Intergenic	Intergenic	15939.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	4.0	0.0	5.0	1.0	0.0	12.5
Merged-chr19-7418550-2	chr19	7418050	7419050	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175381, intron 1 of 4)	intron (NM_175381, intron 1 of 4)	925.0	NM_175381	108899.0	Mm.386838	NM_175381	ENSMUSG00000053080	2700081O15Rik	AI255177|AI848741|AW742297	RIKEN cDNA 2700081O15 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182121755-2	chr1	182121255	182122255	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-2982.0	NM_012058	27058.0	Mm.273196	NM_012058	ENSMUSG00000026511	Srp9	9kDa	signal recognition particle 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80225970-1	chr15	80225470	80226470	+	590.0	f0_balb.idr	Intergenic	B3|SINE|B2	-8110.0	NM_001357659	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	4.5	1.5	5.0	12.5	12.0	8.0
Merged-chr3-95295856-2	chr3	95295356	95296356	+	590.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023628)	TTS (NM_023628)	10948.0	NM_001085383	71790.0	Mm.218844	NM_023628	ENSMUSG00000015702	Anxa9	1110003P15Rik|2310069F17Rik	annexin A9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48193307-2	chr17	48192807	48193807	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26050.0	NM_178796	328830.0	Mm.470939	NM_178796	ENSMUSG00000043939	A530064D06Rik	Trem4|pdctrem	RIKEN cDNA A530064D06 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40649163-1	chr19	40648663	40649663	+	590.0	f1_balb.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	-10607.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	13.0	23.0	13.5	13.5	18.5	22.0
Merged-chr18-34469080-2	chr18	34468580	34469580	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146084, intron 8 of 20)	intron (NM_146084, intron 8 of 20)	37743.0	NM_146084	225358.0	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	0.5	0.0	1.0	3.5	0.0	4.5
Merged-chr8-46149929-1	chr8	46149429	46150429	+	590.0	f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-13722.0	NM_025747	66756.0	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430	cilia and flagella associated protein 97	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40596532-1	chr19	40596032	40597032	+	590.0	f0_balb.idr	TTS (NM_026260)	TTS (NM_026260)	-8069.0	NM_153554	56454.0	Mm.233117	NM_019698	ENSMUSG00000025007	Aldh18a1	2810433K04Rik|AI429789|Pycs	aldehyde dehydrogenase 18 family, member A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20466206-1	chr11	20465706	20466706	+	590.0	f0_balb.idr	Intergenic	Intergenic	-77047.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	4.0	3.0	1.0	1.0	7.0	11.0
Merged-chr10-23788534-2	chr10	23788034	23789034	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1325.0	NM_011295	20042.0	Mm.371846	NM_011295	ENSMUSG00000061983	Rps12	-	ribosomal protein S12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95876450-2	chr11	95875950	95876950	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008081, intron 5 of 10)	intron (NM_008081, intron 5 of 10)	17633.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24416068-2	chr17	24415576	24416576	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357626, intron 2 of 8)	B1_Mur4|SINE|Alu	1401.0	NM_001080128	19826.0	Mm.1951	NM_009070	ENSMUSG00000034681	Rnps1	-	ribonucleic acid binding protein S1	protein-coding	10.0	38.5	7.0	9.0	7.0	13.0
Merged-chr13-99255021-1	chr13	99254521	99255521	+	590.0	f0_balb.idr	Intergenic	Intergenic	70198.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67824865-2	chr18	67824365	67825365	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027556, intron 14 of 45)	intron (NM_027556, intron 14 of 45)	24758.0	NM_027556	70799.0	Mm.30857	NM_027556	ENSMUSG00000024542	Cep192	4631422C13Rik|D430014P18Rik	centrosomal protein 192	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-40711175-1	chr3	40710675	40711675	+	590.0	f0_balb.idr	intron (NM_178386, intron 1 of 5)	L1_Mus3|LINE|L1	2304.0	NM_178386	73333.0	Mm.78691	NM_178386	ENSMUSG00000069041	Slc25a31	1700034J06Rik|Ant4|Sfec	solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90236154-2	chr9	90235654	90236654	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	Tigger13a|DNA|TcMar-Tigger	34615.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-92998780-1	chr13	92998280	92999280	+	590.0	f1_c57bl6.idr	Intergenic	Intergenic	-74524.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	2.5	14.5	6.5	1.5	3.0	5.5
Merged-chr2-30094370-2	chr2	30093870	30094870	+	590.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025428)	promoter-TSS (NM_025428)	-735.0	NM_001037762	66220.0	Mm.22538	NM_025428	ENSMUSG00000015335	Zdhhc12	1190004A01Rik	zinc finger, DHHC domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-80957319-1	chr3	80956819	80957819	+	590.0	f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-43659.0	NM_001345955	14658.0	Mm.275639	NM_010298	ENSMUSG00000028020	Glrb	AI853901|Glyrb|spa|spastic	glycine receptor, beta subunit	protein-coding	2.0	5.5	1.5	2.0	5.5	0.0
Merged-chr2-27314523-2	chr2	27314023	27315023	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 3 of 29)	intron (NR_133905, intron 3 of 29)	-67220.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-109218315-3	chr7	109217834	109218834	+	590.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43127.0	NM_001302205	109594.0	Mm.360145	NM_057173	ENSMUSG00000036111	Lmo1	Rbtn-1|Rbtn1|Ttg1	LIM domain only 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21101095-1	chr9	21100595	21101595	+	590.0	f0_balb.idr	Intergenic	Intergenic	-9087.0	NR_038081	100568458.0	Mm.196137	NR_038081		Gm38431	Raver1-fdx1l	predicted gene, 38431	ncRNA	7.0	6.0	2.5	0.0	0.0	0.0
Merged-chr4-8545247-1	chr4	8544747	8545747	+	590.0	f0_balb.idr	intron (NM_021518, intron 1 of 7)	intron (NM_021518, intron 1 of 7)	9603.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	22.5	18.5	7.0	3.0	4.0	14.0
Merged-chr2-102814383-1	chr2	102813883	102814883	+	590.0	f1_c57bl6.idr	intron (NM_001039150, intron 13 of 13)	intron (NM_001039150, intron 13 of 13)	-67623.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	34.0	87.5	61.5	33.5	76.5	49.0
Merged-chr12-78865794-1	chr12	78865294	78866294	+	590.0	f1_balb.idr	intron (NM_026114, intron 1 of 7)	intron (NM_026114, intron 1 of 7)	3722.0	NM_026114	13665.0	Mm.196220	NM_026114	ENSMUSG00000021116	Eif2s1	0910001O23Rik|2410026C18Rik|35kDa|Eif2a|eIF2alpha	eukaryotic translation initiation factor 2, subunit 1 alpha	protein-coding	0.0	3.5	1.5	0.0	3.5	0.0
Merged-chr6-128062926-1	chr6	128062426	128063426	+	590.0	f1_c57bl6.idr	intron (NM_001356301, intron 1 of 7)	intron (NM_001356301, intron 1 of 7)	80652.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	2.0	0.0	0.0	0.0	0.0	3.5
Merged-chr9-98955939-1	chr9	98955439	98956439	+	590.0	f0_balb.idr	promoter-TSS (NR_003248)	promoter-TSS (NR_003248)	332.0	NM_012020	26927.0	Mm.151239	NM_012020	ENSMUSG00000050397	Foxl2	AU045128|BPES|PINTO|Pfrk	forkhead box L2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51655263-2	chr13	51654763	51655763	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308448, intron 4 of 16)	intron (NM_001308448, intron 4 of 16)	3555.0	NM_029279	75420.0	Mm.275981	NM_029279	ENSMUSG00000035139	Secisbp2	2210413N07Rik|2810012K13Rik|SBP2	SECIS binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43580737-2	chr7	43580237	43581237	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357769, intron 1 of 3)	intron (NM_001357769, intron 1 of 3)	1151.0	NM_001357769	210105.0	Mm.234422	NM_172482	ENSMUSG00000030469	Zfp719	8030458J18|9430094P17Rik|C630016O21Rik|mszf6	zinc finger protein 719	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110479650-1	chr11	110479150	110480150	+	590.0	f1_balb.idr	intron (NM_001356346, intron 1 of 11)	intron (NM_001356346, intron 1 of 11)	310.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	19.5	34.0	27.5	2.0	14.0	5.0
Merged-chr1-10826624-2	chr1	10826124	10827124	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030645, intron 2 of 3)	Lx2|LINE|L1	39250.0	NR_030645	100124448.0		NR_030645	ENSMUSG00000076948	Mir467e	Mirn467e	microRNA 467e	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64827979-1	chr15	64827479	64828479	+	590.0	f1_c57bl6.idr	intron (NM_009623, intron 2 of 17)	ORR1A3|LTR|ERVL-MaLR	94317.0	NM_001331075	11514.0	Mm.1425	NM_009623	ENSMUSG00000022376	Adcy8	AC8|AW060868	adenylate cyclase 8	protein-coding	1.5	4.0	0.0	0.0	1.5	0.5
Merged-chr5-139547184-2	chr5	139546684	139547684	+	590.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013702, exon 3 of 3)	exon (NM_013702, exon 3 of 3)	3286.0	NM_013702	22255.0	Mm.42190	NM_013702	ENSMUSG00000029546	Uncx	Chx4|Uncx4.1	UNC homeobox	protein-coding	0.0	0.0	0.0	2.0	0.0	0.0
Merged-chr2-153112221-2	chr2	153111721	153112721	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 1 of 12)	L1M5|LINE|L1	3753.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	28.0	39.0	30.0	24.5	38.5	38.0
Merged-chr11-106420497-2	chr11	106419997	106420997	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 8 of 21)	intron (NM_023913, intron 8 of 21)	-37716.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70209531-2	chr14	70209031	70210031	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1860.0	NM_011366	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75645027-2	chr10	75644527	75645527	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1019.0	NM_027890	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59154257-2	chr2	59153757	59154757	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 1 of 13)	intron (NM_001362394, intron 1 of 13)	6426.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70388990-1	chr9	70388490	70389490	+	590.0	f0_balb.idr	intron (NM_181072, intron 26 of 27)	intron (NM_181072, intron 26 of 27)	16763.0	NR_049200	100885839.0		NR_049200	ENSMUSG00000093763	Mir5626	Gm25590|mir-5626|mmu-mir-5626	microRNA 5626	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143033084-3	chr5	143032587	143033587	+	590.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	72732.0	NM_007984	14086.0	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114173886-1	chr5	114173386	114174386	+	590.0	f1_balb.idr	intron (NM_133904, intron 1 of 51)	intron (NM_133904, intron 1 of 51)	8368.0	NM_133904	100705.0	Mm.81793	NM_133904	ENSMUSG00000042010	Acacb	AI597064|AW743042|Acc2|Accb	acetyl-Coenzyme A carboxylase beta	protein-coding	1.5	2.0	0.0	0.0	0.5	2.0
Merged-chr16-79304436-2	chr16	79303936	79304936	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-213339.0	NM_178855	19146.0	Mm.5184	NM_008941	ENSMUSG00000022857	Tmprss15	Entk|Prss7	transmembrane protease, serine 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-151380281-2	chr3	151379781	151380781	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57601.0	NM_133222	170757.0	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding	5.5	5.5	0.0	7.0	1.5	0.0
Merged-chr17-26918373-2	chr17	26917873	26918873	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053173, intron 1 of 10)	intron (NM_053173, intron 1 of 10)	1282.0	NM_053173	16580.0	Mm.491138	NM_016761	ENSMUSG00000024301	Kifc5b	Hset|KNSL2|Kifc5a	kinesin family member C5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69132870-1	chr11	69132370	69133370	+	590.0	f1_balb.idr	intron (NM_011786, intron 6 of 14)	intron (NM_011786, intron 6 of 14)	6493.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	2.0	1.5	0.0	3.5	1.5	0.0
Merged-chr5-69559070-2	chr5	69558570	69559570	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310631, intron 4 of 14)	intron (NM_001310631, intron 4 of 14)	2146.0	NM_001310631	231279.0	Mm.21105	NM_172711	ENSMUSG00000029208	Guf1	4631409J12|AA407526|EF-4	GUF1 homolog, GTPase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103682563-1	chr14	103682063	103683063	+	590.0	f0_balb.idr	intron (NM_198014, intron 2 of 6)	intron (NM_198014, intron 2 of 6)	16869.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61198434-2	chr10	61197934	61198934	+	590.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081127, exon 22 of 22)	3' UTR (NM_001081127, exon 22 of 22)	23172.0	NM_023064	65971.0	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80503005-2	chr10	80502505	80503505	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139226, intron 1 of 1)	intron (NM_139226, intron 1 of 1)	8099.0	NM_139226	246086.0	Mm.250572	NM_139226	ENSMUSG00000045518	Onecut3	OC-3|Oc3	one cut domain, family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80729964-2	chr17	80729464	80730464	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1939.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113793148-2	chr13	113792648	113793648	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1360.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150609556-2	chr4	150609056	150610056	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	B4|SINE|B4	42618.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	4.0	29.0	8.5	8.5	8.5	2.5
Merged-chr16-4609096-2	chr16	4608596	4609596	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031184, intron 2 of 6)	intron (NM_031184, intron 2 of 6)	14383.0	NM_031184	83396.0	Mm.134072	NM_031184	ENSMUSG00000014303	Glis2	Gli5|Klf16|Nkl	GLIS family zinc finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50730181-2	chr17	50729681	50730681	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31500.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89861968-2	chr3	89861468	89862468	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	U6|snRNA|snRNA	30598.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97329807-2	chr7	97329254	97330254	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2569.0	NM_001039039	622320.0	Mm.334029	NM_001039039	ENSMUSG00000044952	Kctd21	EG622320	potassium channel tetramerisation domain containing 21	protein-coding	0.0	2.0	0.0	1.0	0.0	0.0
Merged-chr5-134179160-2	chr5	134178640	134179640	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-2373.0	NM_033572	94254.0	Mm.29508	NM_033572	ENSMUSG00000061979	Rcc1l	5730496C04Rik|AU019812|Wbscr16	reculator of chromosome condensation 1 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77716351-1	chr9	77715851	77716851	+	590.0	f0_balb.idr	Intergenic	Intergenic	-38184.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	1.0	2.0	10.0	8.0	8.5	7.0
Merged-chr15-25659336-2	chr15	25658836	25659836	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 1 of 40)	intron (NM_019472, intron 1 of 40)	36786.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127123506-1	chr3	127123006	127124006	+	590.0	f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	-37799.0	NR_105030	100862268.0	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA	5.0	31.0	14.0	2.0	2.5	0.5
Merged-chr10-77269251-2	chr10	77268751	77269751	+	590.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_030262, exon 9 of 9)	3' UTR (NM_030262, exon 9 of 9)	9951.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-108043749-1	chr13	108043249	108044249	+	590.0	f0_balb.idr	promoter-TSS (NM_001048250)	promoter-TSS (NM_001048250)	-725.0	NM_001048250	75616.0	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-98861052-2	chr2	98860515	98861515	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	1393358.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	1.0	1.5	1.0	1.5	0.0	4.0
Merged-chr1-180323522-2	chr1	180323022	180324022	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6954.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31184580-2	chr14	31184080	31185080	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347583, intron 13 of 13)	intron (NM_001347583, intron 13 of 13)	-15939.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-61631108-1	chr2	61630608	61631608	+	590.0	f0_balb.idr	non-coding (NR_149323, exon 6 of 10)	non-coding (NR_149323, exon 6 of 10)	38011.0	NR_149323	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23986369-2	chr16	23985869	23986869	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009744, intron 1 of 9)	intron (NM_009744, intron 1 of 9)	2483.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-89159492-1	chr18	89158992	89159992	+	590.0	f0_c57.idr	Intergenic	Intergenic	-37935.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46600974-2	chr18	46600474	46601474	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010120, intron 2 of 2)	intron (NM_010120, intron 2 of 2)	3270.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80832894-1	chr7	80832394	80833394	+	590.0	f1_c57bl6.idr	Intergenic	RLTR19-int|LTR|ERVK	-29214.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	10.0	35.0	10.5	17.0	38.5	16.5
Merged-chr8-6842095-2	chr8	6841595	6842595	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR10A|LTR|ERVK	-1736808.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	0.0	0.0	0.0	0.0	2.5	0.0
Merged-chr2-8206416-2	chr2	8205916	8206916	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-810218.0	NM_001110231	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-78140203-2	chr5	78139703	78140703	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	674715.0	NR_131050	69370.0	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-108110896-2	chr2	108110396	108111396	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	820307.0	NM_021275	16492.0	Mm.142718	NM_021275	ENSMUSG00000042604	Kcna4	Kv1.4	potassium voltage-gated channel, shaker-related subfamily, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18732718-2	chr16	18732218	18733218	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44129.0	NM_013805	12741.0	Mm.22768	NM_013805	ENSMUSG00000041378	Cldn5	AI854493|MBEC1|Tmvcf	claudin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111451614-2	chr12	111451114	111452114	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009396, intron 11 of 11)	MIRb|SINE|MIR	8953.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-186261499-1	chr1	186260999	186261999	+	590.0	f0_balb.idr	Intergenic	Intergenic	-144189.0	NM_146106	226791.0	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-35291109-1	chr11	35290609	35291609	+	590.0	f1_c57bl6.idr	intron (NM_011412, intron 4 of 35)	intron (NM_011412, intron 4 of 35)	169653.0	NM_011412	20564.0	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit guidance ligand 3	protein-coding	0.5	6.5	2.0	0.0	1.5	0.5
Merged-chr7-100436473-2	chr7	100435973	100436973	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 24 of 32)	B2_Mm1a|SINE|B2	-36518.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	1.0	0.0	0.0	0.0	2.0	0.0
Merged-chr10-63372080-1	chr10	63371580	63372580	+	590.0	f1_c57bl6.idr	Intergenic	B3|SINE|B2	-10363.0	NM_001253685	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55372676-2	chr12	55372176	55373176	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025373, intron 4 of 6)	intron (NM_025373, intron 4 of 6)	-11546.0	NM_001310583	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88368852-1	chr10	88368352	88369352	+	590.0	f0_balb.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-10560.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131058012-2	chr1	131057512	131058512	+	590.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008551, exon 4 of 10)	exon (NM_008551, exon 4 of 10)	38167.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8666050-2	chr11	8665561	8666561	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1526.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	2.5
Merged-chr3-134497994-2	chr3	134497494	134498494	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR1B-int|LTR|ERV1	-74359.0	NR_040600	75208.0	Mm.84580	NR_040600	ENSMUSG00000105765	4930539C22Rik	-	RIKEN cDNA 4930539C22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34935557-2	chr6	34935057	34936057	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009292, intron 6 of 8)	intron (NM_009292, intron 6 of 8)	14609.0	NM_009292	20899.0	Mm.5171	NM_009292	ENSMUSG00000029848	Stra8	-	stimulated by retinoic acid gene 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10519051-1	chr19	10518551	10519551	+	590.0	f1_balb.idr	intron (NM_025333, intron 1 of 3)	L1_Mus3|LINE|L1	6158.0	NM_025333	66072.0	Mm.180063	NM_025333	ENSMUSG00000024668	Sdhaf2	0610038F07Rik|AA407634|AW049997	succinate dehydrogenase complex assembly factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140741327-2	chr5	140740827	140741827	+	590.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_173405, exon 3 of 8)	exon (NM_173405, exon 3 of 8)	17200.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88552883-2	chr17	88552347	88553347	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028658, intron 7 of 21)	ORR1G|LTR|ERVL-MaLR	22723.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	50.5	93.5	84.5	26.5	104.0	67.5
Merged-chr10-71226174-2	chr10	71225674	71226674	+	590.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009360, exon 7 of 7)	3' UTR (NM_009360, exon 7 of 7)	11870.0	NM_009360	21780.0	Mm.229292	NM_009360	ENSMUSG00000003923	Tfam	AI661103|Hmgts|mtTFA|tsHMG	transcription factor A, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23833520-2	chr18	23833020	23834020	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 3 of 7)	intron (NM_001162941, intron 3 of 7)	29550.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-17132531-1	chr19	17132031	17133031	+	590.0	f1_balb.idr	intron (NM_181348, intron 9 of 19)	intron (NM_181348, intron 9 of 19)	176413.0	NM_181348	353211.0	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	3.5	10.0	5.5	3.5	8.5	3.5
Merged-chr14-50865552-1	chr14	50865052	50866052	+	590.0	f0_balb.idr	intron (NM_009351, intron 4 of 54)	MTD|LTR|ERVL-MaLR	5002.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	15.5	58.5	29.0	14.5	48.5	46.0
Merged-chr1-52099089-1	chr1	52098589	52099589	+	590.0	f0_balb.idr	intron (NM_001308266, intron 17 of 24)	intron (NM_001308266, intron 17 of 24)	-20349.0	NM_001357627	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99075185-2	chr9	99074685	99075685	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 8 of 23)	(CAAA)n|Simple_repeat|Simple_repeat	-39495.0	NM_001080776	382097.0	Mm.293727	NM_001080776	ENSMUSG00000044860	Gm1123	AV052824|CLSP	predicted gene 1123	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30963040-2	chr2	30962540	30963540	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144884, intron 4 of 4)	intron (NM_144884, intron 4 of 4)	4878.0	NM_144884	30931.0	Mm.154994	NM_144884	ENSMUSG00000026849	Tor1a	DQ2|Dyt1|torsinA	torsin family 1, member A (torsin A)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-65476727-1	chr15	65476227	65477227	+	590.0	f1_balb.idr	Intergenic	Lx2B|LINE|L1	-310293.0	NM_133766	76740.0	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	3.0	2.0	0.5	2.5	2.0	1.5
Merged-chr12-40604288-2	chr12	40603788	40604788	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	158235.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-14959130-1	chr3	14958630	14959630	+	590.0	f0_balb.idr	Intergenic	Intergenic	-12071.0	NR_040549	77127.0	Mm.195792	NR_040549	ENSMUSG00000098008	A930001A20Rik	-	RIKEN cDNA A930001A20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148495332-2	chr2	148494832	148495832	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51797.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171001974-2	chr1	171001474	171002474	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-16952.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0.0	6.0	9.5	0.0	0.0	0.0
Merged-chr10-28746562-2	chr10	28746062	28747062	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305663, intron 3 of 5)	Lx3A|LINE|L1	78202.0	NM_178666	210757.0	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94235633-2	chr11	94235133	94236133	+	590.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_181819)	TTS (NM_181819)	6946.0	NM_181819	278507.0	Mm.342216	NM_181819	ENSMUSG00000044177	Wfikkn2	2610304F08Rik|AY100450|Gasp1|WFIKKNRP	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2	protein-coding	0.5	0.0	0.0	1.0	2.5	2.0
Merged-chr2-25617638-2	chr2	25617138	25618138	+	590.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029859)	promoter-TSS (NM_029859)	40.0	NM_029859	77058.0	Mm.478493	NM_029859	ENSMUSG00000026940	Ccdc183	4921530D09Rik|Cccd183|Kiaa1984	coiled-coil domain containing 183	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-47079884-2	chr7	47079384	47080384	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163565, intron 11 of 13)	intron (NM_001163565, intron 11 of 13)	3340.0	NR_106023	102465639.0		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-25201519-2	chr19	25201019	25202019	+	590.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028785, exon 48 of 48)	3' UTR (NM_028785, exon 48 of 48)	-35456.0	NM_181404	107351.0	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	1.0	0.0	0.0	0.0	2.0	0.0
Merged-chr1-65182371-2	chr1	65181871	65182871	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111320, intron 1 of 8)	intron (NM_001111320, intron 1 of 8)	-3229.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10771449-3	chr17	10770946	10771946	+	589.972229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	68745.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45438234-2	chr13	45437744	45438744	+	589.875	f0_balb.idr|f1_balb.idr	Intergenic	B1F|SINE|Alu	48502.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	0.0	0.0	3.0	2.5	0.0	0.5
Merged-chr7-29289067-2	chr7	29288567	29289567	+	589.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026731)	promoter-TSS (NM_026731)	-253.0	NM_026731	68458.0	Mm.2343	NM_026731	ENSMUSG00000037166	Ppp1r14a	1110001M11Rik|Cpi17	protein phosphatase 1, regulatory (inhibitor) subunit 14A	protein-coding	0.0	0.0	0.5	2.5	0.0	0.0
Merged-chr5-139346775-2	chr5	139346275	139347275	+	589.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1609.0	NM_197980	68033.0	Mm.261064	NM_197980	ENSMUSG00000045438	Cox19	1810074D02Rik|2810437L13Rik	cytochrome c oxidase assembly protein 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84381239-3	chr2	84380701	84381701	+	589.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018782, intron 2 of 15)	intron (NM_018782, intron 2 of 15)	44065.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	3.5	4.0	4.0	13.5	8.0	2.0
Merged-chr8-94362673-2	chr8	94362173	94363173	+	589.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_019415, intron 24 of 24)	intron (NM_019415, intron 24 of 24)	-23756.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5422068-3	chr17	5421601	5422601	+	589.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027457, intron 3 of 3)	intron (NM_027457, intron 3 of 3)	-3334.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52917032-3	chr2	52916539	52917539	+	589.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	MTC|LTR|ERVL-MaLR	59171.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116865661-3	chr11	116865019	116866019	+	589.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_178620, intron 8 of 12)	intron (NM_178620, intron 8 of 12)	11519.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	11.5	1.0	19.0	24.0	18.5	7.5
Merged-chr5-25246060-3	chr5	25245547	25246547	+	589.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359890)	promoter-TSS (NM_001359890)	-326.0	NM_001359890	231050.0	Mm.246718	NM_144908	ENSMUSG00000038072	Galnt11	A430075I06Rik|AI648252|E430002F06Rik	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11005037-3	chr8	11004503	11005503	+	589.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081212, exon 1 of 2)	exon (NM_001081212, exon 1 of 2)	-2847.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32130641-3	chr2	32130150	32131150	+	589.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20498.0	NM_172661	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11092685-2	chr16	11092185	11093185	+	589.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029582, intron 6 of 11)	intron (NM_029582, intron 6 of 11)	-4755.0	NM_134105	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117576249-2	chr8	117575749	117576749	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 9 of 32)	intron (NM_172285, intron 9 of 32)	77974.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-83836828-2	chr3	83836328	83837328	+	589.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011905, exon 3 of 3)	exon (NM_011905, exon 3 of 3)	4780.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126611940-2	chr4	126611440	126612440	+	589.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001145950, exon 2 of 2)	exon (NM_001145950, exon 2 of 2)	2086.0	NM_001145950	230757.0	Mm.296838	NM_001013755	ENSMUSG00000073755	5730409E04Rik	7530403E16Rik|AI849033	RIKEN cDNA 5730409E04Rik gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-138844908-2	chr7	138844408	138845408	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045483, intron 1 of 1)	intron (NM_001045483, intron 1 of 1)	1359.0	NM_001045483	69546.0	Mm.31598	NM_027115	ENSMUSG00000041775	Mapk1ip1	2310009E07Rik|AU043776|MISS	mitogen-activated protein kinase 1 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107363116-2	chr4	107362616	107363616	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4668.0	NM_028355	72787.0	Mm.28478	NM_028355	ENSMUSG00000028614	Ndc1	2810475A17Rik|AI450313|Tmem48|sks	NDC1 transmembrane nucleoporin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36711265-2	chr1	36710765	36711765	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1340.0	NM_146107	226977.0	Mm.28521	NM_146107	ENSMUSG00000037351	Actr1b	2310066K23Rik|AA960180|AI851923|Arp1b	ARP1 actin-related protein 1B, centractin beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36136875-2	chr17	36136353	36137353	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-7428.0	NM_001177467	630294.0	Mm.484916	NM_001177467	ENSMUSG00000092243	Gm7030	EG630294|H2-t9	predicted gene 7030	protein-coding	0.0	0.0	0.0	2.5	0.0	0.0
Merged-chr11-115862112-2	chr11	115861612	115862612	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38027.0	NM_183259	66528.0	Mm.275740	NM_183259	ENSMUSG00000048442	Smim5	2210020M01Rik	small integral membrane protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85712118-2	chr12	85711618	85712618	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAA)n|Simple_repeat|Simple_repeat	25398.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166620611-2	chr2	166620111	166621111	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 6 of 39)	MTE2b|LTR|ERVL-MaLR	56089.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29051739-2	chr2	29051239	29052239	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166705, intron 1 of 5)	intron (NM_001166705, intron 1 of 5)	3327.0	NM_001166705	329375.0	Mm.425079	NM_001085514	ENSMUSG00000079502	Cfap77	1700101E01Rik|Gm823	cilia and flagella associated protein 77	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124274410-2	chr6	124273910	124274910	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30241.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105285055-2	chr8	105284555	105285555	+	589.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001166394, exon 3 of 7)	exon (NM_001166394, exon 3 of 7)	4473.0	NM_001166394	74356.0	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18916701-2	chr2	18916201	18917201	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	81420.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4837805-2	chr16	4837305	4838305	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030192, intron 1 of 15)	MIRb|SINE|MIR	2389.0	NM_030192	78809.0	Mm.325551	NM_030192	ENSMUSG00000022518	4930562C15Rik	-	RIKEN cDNA 4930562C15 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-82318546-2	chr5	82318046	82319046	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-193833.0	NR_138557	67327.0	Mm.87058	NR_138557		1700031L13Rik	-	RIKEN cDNA 1700031L13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61350730-2	chr9	61350230	61351230	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-21636.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-82815379-2	chr6	82814879	82815879	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-40925.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106822601-2	chr11	106822101	106823101	+	589.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025481, exon 19 of 19)	3' UTR (NM_025481, exon 19 of 19)	33349.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152634536-2	chr1	152634036	152635036	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346118, intron 2 of 18)	intron (NM_001346118, intron 2 of 18)	-9319.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97277431-1	chr6	97276931	97277931	+	589.5	f1_c57bl6.idr	Intergenic	Intergenic	-24651.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.0	1.0	3.5	11.0	0.0	2.0
Merged-chr17-7276690-2	chr17	7276190	7277190	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011299, intron 11 of 20)	intron (NM_011299, intron 11 of 20)	-47970.0	NM_011553	21461.0	Mm.264651	NM_011553	ENSMUSG00000071322	Tcp10a	D17Leh66A|D17Leh66aa|Gm10326|T66A-a|Tcp-10a	t-complex protein 10a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69690997-2	chr11	69690497	69691497	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011614, intron 5 of 6)	intron (NM_011614, intron 5 of 6)	5101.0	NM_011614	21944.0	Mm.8983	NM_011614	ENSMUSG00000097328	Tnfsf12	Apo3l|Dr3l|Dr3lg|Tweak	tumor necrosis factor (ligand) superfamily, member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114296181-2	chr6	114295681	114296681	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178703, intron 1 of 15)	intron (NM_178703, intron 1 of 15)	13546.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64864223-2	chr5	64863723	64864723	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60700.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63423590-2	chr4	63423090	63424090	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008792, intron 7 of 11)	(TG)n|Simple_repeat|Simple_repeat	-20145.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-45451628-2	chr5	45451128	45452128	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1399.0	NM_024236	110391.0	Mm.30204	NM_024236	ENSMUSG00000015806	Qdpr	2610008L04Rik|D5Ertd371e|Dhpr|PKU2	quinoid dihydropteridine reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173658030-2	chr2	173657530	173658530	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_027957, intron 2 of 14)	intron (NR_027957, intron 2 of 14)	1509.0	NR_027957	100043911.0	Mm.260590	NM_001033179	ENSMUSG00000055897	Ppp4r1l-ps	1700007P14Rik|5830403E09Rik|C030010B13Rik|Ppp4r1l	protein phosphatase 4, regulatory subunit 1-like, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91207544-2	chr2	91207044	91208044	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357067, intron 7 of 10)	intron (NM_001357067, intron 7 of 10)	4632.0	NM_007387	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84924437-2	chr15	84923937	84924937	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016714, intron 1 of 7)	intron (NM_016714, intron 1 of 7)	1009.0	NM_016714	18141.0	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180414146-2	chr1	180413646	180414646	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 4 of 7)	intron (NM_001081175, intron 4 of 7)	69358.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-79451719-2	chr16	79451219	79452219	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-360622.0	NM_178855	19146.0	Mm.5184	NM_008941	ENSMUSG00000022857	Tmprss15	Entk|Prss7	transmembrane protease, serine 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-62230766-2	chr14	62230266	62231266	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	62213.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164454256-2	chr2	164453757	164454757	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6714.0	NM_025575	66460.0	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	0.0	7.0	2.0	1.5	5.0	1.5
Merged-chr17-24880845-2	chr17	24880345	24881345	+	589.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008340, exon 2 of 2)	exon (NM_008340, exon 2 of 2)	2075.0	NM_008340	16005.0	Mm.3135	NM_008340	ENSMUSG00000046070	Igfals	ALS|Albs|mKIAA4111	insulin-like growth factor binding protein, acid labile subunit	protein-coding	0.0	0.0	0.0	1.5	0.0	2.5
Merged-chr5-143487771-2	chr5	143487271	143488271	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 8 of 14)	B4|SINE|B4	23278.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-12280966-2	chr2	12280466	12281466	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001309, intron 2 of 29)	ORR1E|LTR|ERVL-MaLR	-20280.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17796073-2	chr12	17795578	17796578	+	589.5	f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	105269.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	6.5	14.0	7.5	0.0	4.0	3.0
Merged-chr5-66018370-2	chr5	66017870	66018870	+	589.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001127382, exon 8 of 8)	3' UTR (NM_001127382, exon 8 of 8)	-14085.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-126876362-2	chr10	126875862	126876862	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026858, intron 5 of 5)	intron (NM_026858, intron 5 of 5)	25009.0	NM_026858	68876.0	Mm.276769	NM_026858	ENSMUSG00000025436	Atp23	1110068E08Rik|2410012H02Rik|Xrcc6bp1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145258926-1	chr7	145258426	145259426	+	589.5	f1_balb.idr	intron (NR_132643, intron 15 of 22)	intron (NR_132643, intron 15 of 22)	25085.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	2.0	0.0	1.0	0.0	6.5	1.0
Merged-chr13-44786485-2	chr13	44785985	44786985	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205043, intron 1 of 17)	intron (NM_001205043, intron 1 of 17)	55214.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54706761-2	chr6	54706261	54707261	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	25137.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	0.0	0.0	0.0	3.5	0.0	0.0
Merged-chr10-68137677-1	chr10	68137177	68138177	+	589.5	f0_balb.idr	intron (NM_023598, intron 4 of 9)	intron (NM_023598, intron 4 of 9)	141049.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.0	5.0	9.5	3.5	7.0	9.5
Merged-chr14-36865695-2	chr14	36865195	36866195	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53840.0	NM_001347503	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111325787-2	chr8	111325287	111326287	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310613, intron 4 of 10)	ORR1B1|LTR|ERVL-MaLR	12418.0	NM_001310613	74568.0	Mm.207971	NM_029005	ENSMUSG00000012519	Mlkl	9130019I15Rik	mixed lineage kinase domain-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13585015-2	chr8	13584515	13585515	+	589.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009025, exon 14 of 24)	exon (NM_009025, exon 14 of 24)	-22554.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79814529-2	chr15	79814029	79815029	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013360, intron 4 of 7)	B4A|SINE|B4	-9820.0	NM_030689	73340.0	Mm.38438	NM_030689	ENSMUSG00000022421	Nptxr	1200009K17Rik|1700036C17Rik|5730406O18Rik|AI452369|AI785356|D15Bwg0580e|NPR|Npcd	neuronal pentraxin receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-16367168-2	chr14	16366679	16367679	+	589.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_009409, intron 1 of 35)	B3|SINE|B2	1973.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6263793-2	chr19	6263293	6264293	+	589.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029830)	promoter-TSS (NR_029830)	-850.0	NR_029830	723957.0		NR_029830	ENSMUSG00000065582	Mir194-2	Mirn194-2|mir-194-2	microRNA 194-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30720443-2	chr2	30719943	30720943	+	589.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037272)	promoter-TSS (NR_037272)	-767.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-66811457-2	chr10	66810957	66811957	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	108927.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172318051-2	chr1	172317562	172318562	+	589.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_080419, exon 4 of 7)	exon (NM_080419, exon 4 of 7)	5695.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	2.0	12.0	4.5	6.5	9.0	3.0
Merged-chr4-146056361-2	chr4	146055861	146056861	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	-11163.0	NR_030771	627585.0	Mm.424988	NM_001039233		Gm13034	-	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6554230-2	chr15	6553730	6554730	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25617.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45489610-2	chr9	45489106	45490106	+	589.333374	f0_c57.idr|f1_c57bl6.idr	intron (NM_001081270, intron 3 of 32)	MTD|LTR|ERVL-MaLR	-58374.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	6.5	26.5	21.0	0.0	8.5	4.5
Merged-chr6-31471556-3	chr6	31471046	31472046	+	589.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013791, intron 10 of 17)	ORR1F|LTR|ERVL-MaLR	72718.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-105456691-2	chr11	105456191	105457191	+	589.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172568)	promoter-TSS (NM_172568)	44.0	NM_172568	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47802619-1	chr17	47802119	47803119	+	589.333313	f1_balb.idr	Intergenic	ID_B1|SINE|B4	16875.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.5	16.5	14.0	0.0	11.5	4.5
Merged-chr5-34230893-3	chr5	34230393	34231393	+	589.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 6 of 12)	intron (NM_001015039, intron 6 of 12)	-43183.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148540081-2	chr5	148539581	148540581	+	589.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	11592.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	2.0	2.0	4.5	7.0	2.0	11.5
Merged-chr2-155538422-1	chr2	155537922	155538922	+	589.333313	f0_c57.idr	intron (NM_019811, intron 2 of 17)	(TG)n|Simple_repeat|Simple_repeat	18508.0	NR_040613	74945.0	Mm.401956	NR_040613	ENSMUSG00000086529	Acss2os	4930471I20Rik	acyl-CoA synthetase short-chain family member 2, opposite strand	ncRNA	6.0	15.5	3.5	0.0	0.0	10.0
Merged-chr3-133336636-2	chr3	133336136	133337136	+	589.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293641, intron 5 of 11)	intron (NM_001293641, intron 5 of 11)	26526.0	NM_001293641	74776.0	Mm.210305	NM_146141	ENSMUSG00000028013	Ppa2	1110013G13Rik|Sid6306	pyrophosphatase (inorganic) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24934380-2	chr16	24933880	24934880	+	589.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-125259.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-45869545-2	chr1	45869045	45870045	+	589.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56049.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43519628-2	chr4	43519128	43520128	+	589.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_009416, exon 3 of 9)	exon (NM_009416, exon 3 of 9)	3926.0	NM_009416	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	3.0	3.0	0.0	0.0	2.5	0.0
Merged-chr1-88302675-2	chr1	88302175	88303175	+	589.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-4037.0	NM_134252	171382.0	Mm.218753	NM_134252	ENSMUSG00000036251	Trpm8	CMR1|LTRPC6|LTrpC-6|TRPP8|Trp-p8	transient receptor potential cation channel, subfamily M, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77933714-2	chr18	77933214	77934214	+	589.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4753.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54912561-3	chr14	54911993	54912993	+	589.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001360406, exon 2 of 10)	exon (NM_001360406, exon 2 of 10)	639.0	NM_001360406	59049.0	Mm.27435	NM_021551	ENSMUSG00000022199	Slc22a17	1700094C23Rik|24p3R|AU041908|AW555662|BOIT|Boct	solute carrier family 22 (organic cation transporter), member 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6297345-2	chr11	6296845	6297845	+	589.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_010956, intron 2 of 22)	intron (NM_010956, intron 2 of 22)	4766.0	NM_001361902	18293.0	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	0.0	4.0	0.0	0.0	3.5	0.0
Merged-chr9-111149504-2	chr9	111149004	111150004	+	589.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_027742, intron 3 of 13)	intron (NM_027742, intron 3 of 13)	31393.0	NM_001164838	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	0.0	15.5	2.5	0.0	0.0	0.0
Merged-chr4-43495673-2	chr4	43495173	43496173	+	589.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001013377)	TTS (NM_001013377)	2308.0	NM_001037913	622404.0	Mm.289109	NM_001037913	ENSMUSG00000028461	Ccdc107	-	coiled-coil domain containing 107	protein-coding	0.0	0.5	0.0	0.0	0.5	0.0
Merged-chr4-126197643-4	chr4	126197136	126198136	+	589.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356455, intron 1 of 11)	intron (NM_001356455, intron 1 of 11)	3371.0	NM_001356456	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	4.5	0.0	6.5	7.0	5.5	1.0
Merged-chr16-37576627-2	chr16	37576127	37577127	+	589.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3526.0	NR_027778	15233.0	Mm.157442	NM_013547	ENSMUSG00000022821	Hgd	Hgo|aku	homogentisate 1, 2-dioxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152143719-2	chr2	152143219	152144219	+	589.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_009328, exon 1 of 2)	exon (NM_009328, exon 1 of 2)	110.0	NM_009328	21407.0	Mm.3881	NM_009328	ENSMUSG00000068079	Tcf15	Meso1|bHLH-EC2	transcription factor 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-142865321-2	chr6	142864821	142865821	+	589.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011374, intron 4 of 4)	intron (NM_011374, intron 4 of 4)	51090.0	NR_045707	665037.0	Mm.401493	NR_045707	ENSMUSG00000072683	Gm7457	EG665037	predicted gene 7457	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69179345-2	chr3	69178838	69179838	+	589.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43081.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	5.5	3.5	6.0	3.0	11.0	9.0
Merged-chr15-60825538-2	chr15	60825038	60826038	+	589.083374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162926)	promoter-TSS (NM_001162926)	-458.0	NM_001162926	399603.0	Mm.411968	NM_207269	ENSMUSG00000072568	Fam84b	BF642811|D330050I23Rik	family with sequence similarity 84, member B	protein-coding	1.0	2.0	0.5	1.0	2.0	0.5
Merged-chr8-70901227-1	chr8	70900727	70901727	+	589.0	f0_c57.idr	Intergenic	RSINE1|SINE|B4	-3784.0	NM_029751	76808.0	Mm.379251	NM_029751	ENSMUSG00000045128	Rpl18a	2510019J09Rik	ribosomal protein L18A	protein-coding	13.0	28.5	29.0	1.5	5.0	1.0
Merged-chr12-100680226-1	chr12	100679726	100680726	+	589.0	f0_balb.idr	intron (NM_153587, intron 1 of 17)	RMER10B|LTR|ERVL	44894.0	NM_001330702	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90499711-2	chr2	90499211	90500211	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	B3A|SINE|B2	-20537.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.5	3.5	3.5	0.0	2.5	3.5
Merged-chr7-112197439-2	chr7	112196939	112197939	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-28397.0	NM_177282	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	0.0	3.5	3.5	1.0	0.0	2.5
Merged-chr17-10532152-2	chr17	10531652	10532652	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 4 of 4)	intron (NM_027032, intron 4 of 4)	75936.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-44894486-2	chr17	44893986	44894986	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178652, intron 2 of 11)	intron (NM_178652, intron 2 of 11)	-13601.0	NM_029257	75341.0	Mm.386821	NM_029257		4930564C03Rik	-	RIKEN cDNA 4930564C03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71290971-1	chr17	71290471	71291471	+	589.0	f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	Lx2|LINE|L1	20040.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	0.5	11.5	2.0	3.0	4.0	7.0
Merged-chr11-110425738-2	chr11	110425238	110426238	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	L1MDa|LINE|L1	26636.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-41125221-2	chr5	41124721	41125721	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	582470.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34188761-1	chr8	34188261	34189261	+	589.0	f0_c57.idr	Intergenic	Intergenic	-22049.0	NR_105820	102465211.0		NR_105820	ENSMUSG00000098785	Mir6395	Gm27561|mmu-mir-6395	microRNA 6395	ncRNA	0.0	3.5	0.5	8.0	0.5	0.5
Merged-chr15-36666723-2	chr15	36666223	36667223	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57750.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86523424-3	chr6	86522773	86523773	+	589.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2916.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140344491-2	chr5	140343991	140344991	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172277, intron 9 of 10)	intron (NM_172277, intron 9 of 10)	12535.0	NM_001356584	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32613811-3	chr11	32613221	32614221	+	589.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 15 of 18)	intron (NM_009288, intron 15 of 18)	-28834.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0.0	5.0	6.5	0.0	1.0	6.5
Merged-chr3-8974697-2	chr3	8974195	8975195	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	ID_B1|SINE|B4	-10549.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	22.5	80.0	57.5	41.0	42.5	33.0
Merged-chr9-105130990-1	chr9	105130490	105131490	+	589.0	f1_c57bl6.idr	intron (NM_029385, intron 2 of 2)	intron (NM_029385, intron 2 of 2)	815.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	21.0	95.0	73.5	100.5	155.0	154.0
Merged-chr5-122709420-1	chr5	122708920	122709920	+	589.0	f1_balb.idr	intron (NM_001310718, intron 1 of 10)	B2_Mm2|SINE|B2	1876.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	12.5	31.0	18.0	12.0	26.5	18.5
Merged-chr6-31225673-2	chr6	31225173	31226173	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040260, intron 1 of 5)	intron (NR_040260, intron 1 of 5)	5322.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-115673245-2	chr3	115672757	115673757	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41798.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	4.5	0.5	1.5	6.0	0.5	1.5
Merged-chr3-146057688-1	chr3	146057188	146058188	+	589.0	f1_c57bl6.idr	intron (NM_172864, intron 16 of 22)	Lx7|LINE|L1	50348.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr3-96587577-1	chr3	96587077	96588077	+	589.0	f1_balb.idr	intron (NM_027241, intron 1 of 7)	ORR1D1|LTR|ERVL-MaLR	6604.0	NM_027241	69870.0	Mm.292739	NM_027241	ENSMUSG00000028104	Polr3gl	2010003I19Rik	polymerase (RNA) III (DNA directed) polypeptide G like	protein-coding	0.0	0.0	0.0	12.0	0.5	0.0
Merged-chr12-105782183-2	chr12	105781710	105782710	+	589.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_030187, exon 18 of 18)	3' UTR (NM_030187, exon 18 of 18)	-2487.0	NM_011112	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	21.0	7.0	36.0	10.0	27.0	22.5
Merged-chr17-28954851-1	chr17	28954351	28955351	+	589.0	f1_c57bl6.idr	intron (NM_025888, intron 1 of 7)	intron (NM_025888, intron 1 of 7)	1635.0	NM_025888	66989.0	Mm.435	NM_025888	ENSMUSG00000005936	Kctd20	2410004N11Rik|AI451943|AW541186|D17Ertd562e	potassium channel tetramerisation domain containing 20	protein-coding	0.0	4.0	1.5	0.0	2.0	0.0
Merged-chr14-50809253-2	chr14	50808753	50809753	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009632, intron 1 of 15)	B3|SINE|B2	1337.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	3.5	4.0	4.0	9.0	3.5	5.5
Merged-chr7-122242871-2	chr7	122242371	122243371	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	23375.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125302313-1	chr6	125301813	125302813	+	589.0	f0_balb.idr	Intergenic	Intergenic	11572.0	NM_010736	17000.0	Mm.3122	NM_010736	ENSMUSG00000030339	Ltbr	AI256028|LTbetaR|Ltar|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFRrp|Tnfbr|Tnfrsf3	lymphotoxin B receptor	protein-coding	12.0	17.0	14.5	3.0	6.5	11.0
Merged-chr8-81343057-2	chr8	81342557	81343557	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024617, intron 1 of 24)	intron (NM_001024617, intron 1 of 24)	495.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.0	0.0	0.0	3.0	0.0	2.0
Merged-chr17-46249159-2	chr17	46248659	46249659	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145353, intron 2 of 8)	intron (NM_145353, intron 2 of 8)	1079.0	NM_145353	28064.0	Mm.248769	NM_145353	ENSMUSG00000071074	Yipf3	C6orf109|D17Wsu94e|KLIP1	Yip1 domain family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51849346-2	chr11	51848846	51849846	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199299, intron 1 of 11)	intron (NM_199299, intron 1 of 11)	8135.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116709019-1	chr4	116708519	116709519	+	589.0	f0_balb.idr	promoter-TSS (NM_025962)	promoter-TSS (NM_025962)	424.0	NR_151451	68394.0	Mm.425201	NM_026714	ENSMUSG00000028689	Ccdc163	0610037D15Rik|4933430J04Rik	coiled-coil domain containing 163	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67405790-1	chr18	67405290	67406290	+	589.0	f1_balb.idr	intron (NM_027130, intron 16 of 16)	B2_Mm2|SINE|B2	15059.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	1.0	10.5	8.5	0.0	1.0	9.5
Merged-chr13-54071116-2	chr13	54070616	54071616	+	589.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027324)	promoter-TSS (NM_027324)	-729.0	NM_027324	14057.0	Mm.134191	NM_027324	ENSMUSG00000021474	Sfxn1	2810002O05Rik|A930015P12Rik|f	sideroflexin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-67071615-2	chr12	67071115	67072115	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001193266, intron 1 of 16)	intron (NM_001193266, intron 1 of 16)	150934.0	NM_001193266	320772.0	Mm.227680	NM_207010	ENSMUSG00000034912	Mdga2	6720489L24Rik|9330209L04Rik|Adp|Mamdc1	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78473551-2	chr10	78473051	78474051	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8603.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-41413330-2	chr7	41412830	41413830	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177764, intron 5 of 5)	L1Md_A|LINE|L1	-19951.0	NM_001199330	233168.0	Mm.379390	NM_183167	ENSMUSG00000056383	AI987944	-	expressed sequence AI987944	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146656062-1	chr3	146655562	146656562	+	589.0	f0_balb.idr	Intergenic	Intergenic	-4745.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71931857-1	chr6	71931357	71932357	+	589.0	f0_balb.idr	intron (NM_009088, intron 12 of 33)	intron (NM_009088, intron 12 of 33)	22804.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-41868600-2	chr10	41868100	41869100	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162908, intron 1 of 9)	Lx9|LINE|L1	-18839.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71404056-1	chr8	71403556	71404556	+	589.0	f1_balb.idr	intron (NM_026636, intron 8 of 8)	intron (NM_026636, intron 8 of 8)	-1956.0	NM_001310502	234396.0	Mm.216549	NM_172756	ENSMUSG00000046295	Ankle1	8430438L13Rik|Ankrd41|C430003I23|Lem3	ankyrin repeat and LEM domain containing 1	protein-coding	32.0	15.0	41.0	16.5	15.5	9.0
Merged-chr16-96087685-2	chr16	96087185	96088185	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-5257.0	NM_145125	93871.0	Mm.240871	NM_145125	ENSMUSG00000022914	Brwd1	5330419I02Rik|D530019K20Rik|G1-403-16|Wdr9|repro5	bromodomain and WD repeat domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117599767-2	chr11	117599267	117600267	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11480.0	NR_015489	78403.0	Mm.212543	NR_015489		2900041M22Rik	-	RIKEN cDNA 2900041M22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83637458-2	chr11	83636958	83637958	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11920.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166757396-2	chr2	166756896	166757896	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36371.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-16428540-2	chr8	16428040	16429040	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053171, intron 7 of 69)	intron (NM_053171, intron 7 of 69)	-259702.0	NR_037214	100526464.0		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA	1.5	14.5	8.5	6.5	5.0	10.0
Merged-chr9-64447105-2	chr9	64446605	64447605	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134399, intron 1 of 24)	intron (NM_001134399, intron 1 of 24)	61479.0	NM_001134399	214058.0	Mm.127721	NM_172522	ENSMUSG00000036466	Megf11	2410080H04Rik|D130061K05	multiple EGF-like-domains 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-33300726-2	chr12	33300226	33301226	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1789.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-84589018-2	chr6	84588518	84589518	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175475, intron 1 of 6)	CpG	4792.0	NM_175475	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5824699-2	chr19	5824199	5825199	+	589.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_131212)	TTS (NR_131212)	20779.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24008481-1	chr17	24007981	24008981	+	589.0	f1_balb.idr	Intergenic	Intergenic	-10381.0	NM_133731	70835.0	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	11.0	30.0	22.5	9.5	39.0	28.5
Merged-chr17-29392577-1	chr17	29392077	29393077	+	589.0	f1_c57bl6.idr	Intergenic	ORR1A1|LTR|ERVL-MaLR	31663.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr2-30328843-1	chr2	30328343	30329343	+	589.0	f0_balb.idr	intron (NM_198304, intron 24 of 43)	ID_B1|SINE|B4	30473.0	NM_139302	227700.0	Mm.33343	NM_139302	ENSMUSG00000026860	Sh3glb2	SPAS-1	SH3-domain GRB2-like endophilin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76500968-1	chr11	76500468	76501468	+	589.0	f1_c57bl6.idr	intron (NM_198018, intron 1 of 21)	intron (NM_198018, intron 1 of 21)	-6473.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	1.5	8.0	5.0	0.0	0.0	10.5
Merged-chr11-97650283-2	chr11	97649783	97650783	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13129.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	3.0	3.5	1.0	0.5	0.5	0.5
Merged-chr3-108050221-2	chr3	108049708	108050708	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-5349.0	NM_001160411	14865.0	Mm.31203	NM_026764	ENSMUSG00000027890	Gstm4	1110004G14Rik|GSTM7-7|Gstb-4|Gstb4	glutathione S-transferase, mu 4	protein-coding	2.0	4.0	3.0	10.0	15.5	7.5
Merged-chr17-44077047-4	chr17	44076573	44077573	+	589.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1729.0	NM_001168620	83965.0	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	1.5	4.0	0.5	1.5	1.5	1.5
Merged-chr3-41182524-1	chr3	41182024	41183024	+	589.0	f0_balb.idr	Intergenic	Intergenic	-99478.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-34957129-2	chr4	34956629	34957629	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 3 of 3)	PB1D11|SINE|Alu	-45648.0	NR_040652	73696.0	Mm.1361	NR_040652	ENSMUSG00000085824	Platr9	2410114N07Rik	pluripotency associated transcript 9	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26931088-2	chr2	26930625	26931625	+	589.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_011512, intron 1 of 5)	intron (NM_011512, intron 1 of 5)	2386.0	NM_011512	20932.0	Mm.300594	NM_011512	ENSMUSG00000014867	Surf4	AL033340|AL033373|Surf-4	surfeit gene 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106820189-2	chr9	106819689	106820689	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1787.0	NM_001015507	321006.0	Mm.440089	NM_001015507	ENSMUSG00000040325	Dcaf1	AI447437|B930007L02Rik|Vprbp|mKIAA0800	DDB1 and CUL4 associated factor 1	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr5-135955507-1	chr5	135955007	135956007	+	589.0	f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	18969.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	20.0	0.0	1.5	11.5	3.5	6.0
Merged-chr1-8588262-1	chr1	8587762	8588762	+	589.0	f1_c57bl6.idr	intron (NM_001290392, intron 10 of 17)	L1_Mus3|LINE|L1	711615.0	NM_001290393	71096.0	Mm.336395	NM_027671	ENSMUSG00000025909	Sntg1	4933426D16Rik|G1SYN|SYN4	syntrophin, gamma 1	protein-coding	5.0	0.0	1.5	6.0	1.0	3.5
Merged-chr11-109860263-1	chr11	109859763	109860763	+	589.0	f0_c57.idr	Intergenic	Intergenic	14385.0	NR_045909	73257.0	Mm.250442	NR_045909	ENSMUSG00000087393	1700023C21Rik	-	RIKEN cDNA 1700023C21 gene	ncRNA	19.0	16.0	14.0	0.5	6.0	0.0
Merged-chr6-88815811-2	chr6	88815311	88816311	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166249, intron 5 of 7)	intron (NM_001166249, intron 5 of 7)	26124.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-72307022-1	chr1	72306522	72307522	+	589.0	f0_balb.idr	promoter-TSS (NM_009533)	promoter-TSS (NM_009533)	-399.0	NM_001357520	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106663494-1	chr11	106662994	106663994	+	589.0	f0_balb.idr	intron (NM_001305158, intron 13 of 14)	intron (NM_001305158, intron 13 of 14)	-50564.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106574851-2	chr8	106574351	106575351	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12292.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-36029085-1	chr12	36028585	36029585	+	589.0	f1_c57bl6.idr	intron (NM_025359, intron 1 of 5)	RSINE1|SINE|B4	13393.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	6.0	6.0	3.0	8.0	32.0	17.0
Merged-chr4-127319803-2	chr4	127319303	127320303	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5764.0	NM_008120	14612.0	Mm.24615	NM_008120	ENSMUSG00000050234	Gja4	AU020209|AW558810|Cnx37|Cx37|Gja-4	gap junction protein, alpha 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77439267-2	chr11	77438767	77439767	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 12 of 14)	intron (NM_177710, intron 12 of 14)	-24646.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73621633-2	chr15	73621133	73622133	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033219, intron 1 of 7)	B3|SINE|B2	3111.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16150305-2	chr19	16149805	16150805	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	B1_Mur3|SINE|Alu	-13793.0	NR_033228	595139.0	Mm.405662	NR_033228		E030024N20Rik	9030417F11Rik|Ppia-ps8	peptidylprolyl isomerase A pseudogene 8	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146525695-1	chr6	146525195	146526195	+	589.0	f0_balb.idr	Intergenic	Intergenic	-23472.0	NM_019923	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	0.0	6.5	2.0	0.5	9.0	1.0
Merged-chr4-88694275-2	chr4	88693775	88694775	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3007.0	NM_008336	15974.0	Mm.377093	NM_008336	ENSMUSG00000100079	Ifnab	-	interferon alpha B	protein-coding	6.5	1.5	2.0	0.0	0.0	4.0
Merged-chr5-101825064-2	chr5	101824564	101825564	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59934.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32976694-1	chr5	32976194	32977194	+	589.0	f0_balb.idr	intron (NM_001025426, intron 39 of 42)	intron (NM_001025426, intron 39 of 42)	-42122.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	3.0	10.0	6.0	7.0	10.5	7.0
Merged-chr16-21248565-2	chr16	21248065	21249065	+	589.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_046162, exon 5 of 5)	non-coding (NR_046162, exon 5 of 5)	7501.0	NR_106145	102465781.0		NR_106145	ENSMUSG00000098400	Mir7680	Gm27417|mmu-mir-7680	microRNA 7680	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-40842267-2	chr2	40841767	40842767	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053011, intron 60 of 90)	Lx4B|LINE|L1	1605301.0	NR_105754	102465171.0		NR_105754	ENSMUSG00000098660	Mir6336	Gm27584|mmu-mir-6336	microRNA 6336	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85398644-2	chr12	85398144	85399144	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER113A|DNA|hAT-Charlie	-23927.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116630562-2	chr6	116630062	116631062	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1563.0	NM_026057	67255.0	Mm.18810	NM_026057	ENSMUSG00000059878	Zfp422	2900028O21Rik|AU041373|KOX15|Krox-25-2|Krox-26|Krox25|Krox26|Znf22	zinc finger protein 422	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-5969052-2	chr9	5968552	5969552	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F|LINE|L1	-199434.0	NM_001357398	71785.0	Mm.390122	NM_027924	ENSMUSG00000032006	Pdgfd	1110003I09Rik	platelet-derived growth factor, D polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79588455-2	chr3	79587955	79588955	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2882.0	NM_001356326	67738.0	Mm.295252	NM_026352	ENSMUSG00000027804	Ppid	4930564J03Rik|CYP-40|Ppidl|Ppif	peptidylprolyl isomerase D (cyclophilin D)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64000172-1	chr15	63999672	64000672	+	589.0	f0_balb.idr	intron (NM_144846, intron 1 of 11)	MIR|SINE|MIR	-2106.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3082678-2	chr4	3082219	3083219	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89364.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-105061360-1	chr12	105060860	105061860	+	589.0	f1_c57bl6.idr	Intergenic	Intergenic	28742.0	NM_028419	73046.0	Mm.29128	NM_028419	ENSMUSG00000021102	Glrx5	-	glutaredoxin 5	protein-coding	0.0	6.0	0.0	0.0	0.0	0.0
Merged-chr6-54110827-2	chr6	54110326	54111326	+	589.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	MIR|SINE|MIR	70894.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	8.0	1.0	3.0	6.5	0.0	0.5
Merged-chr5-125464567-1	chr5	125464067	125465067	+	589.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-11306.0	NM_030210	78894.0	Mm.431573	NM_030210	ENSMUSG00000029482	Aacs	2210408B16Rik|SUR5	acetoacetyl-CoA synthetase	protein-coding	0.5	0.5	1.0	1.5	0.0	0.0
Merged-chr1-37559530-1	chr1	37559030	37560030	+	589.0	f0_balb.idr	Intergenic	Intergenic	-18514.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111068076-1	chr10	111067576	111068576	+	589.0	f1_c57bl6.idr	Intergenic	L1MC4|LINE|L1	-58010.0	NM_172554	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	72.0	118.5	113.5	16.0	32.0	27.0
Merged-chr7-80176647-2	chr7	80176147	80177147	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10194.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	4.0	8.0	4.0	8.5	0.0	2.5
Merged-chr2-91855828-1	chr2	91855328	91856328	+	589.0	f1_balb.idr	intron (NM_001080754, intron 12 of 18)	intron (NM_001080754, intron 12 of 18)	-66361.0	NM_007699	12672.0	Mm.330405	NM_007699	ENSMUSG00000040495	Chrm4	Chrm-4|M4	cholinergic receptor, muscarinic 4	protein-coding	2.0	0.5	1.0	5.0	0.5	0.0
Merged-chr7-125603971-1	chr7	125603471	125604471	+	589.0	f1_c57bl6.idr	intron (NM_021887, intron 1 of 8)	intron (NM_021887, intron 1 of 8)	542.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	5.0	16.0	5.5	6.0	2.0	1.5
Merged-chr6-55057050-1	chr6	55056550	55057550	+	589.0	f0_c57.idr	intron (NM_180678, intron 7 of 16)	MTC|LTR|ERVL-MaLR	19049.0	NM_180678	353172.0	Mm.250004	NM_180678	ENSMUSG00000029777	Gars	GENA202|Gena201|Nmf249|Sgrp23	glycyl-tRNA synthetase	protein-coding	2.0	9.5	8.5	0.0	0.0	4.0
Merged-chr12-98318698-2	chr12	98318198	98319198	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50063.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68376425-2	chr10	68375925	68376925	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-55283.0	NR_045357	75148.0	Mm.23505	NR_045357	ENSMUSG00000112157	4930545H06Rik	-	RIKEN cDNA 4930545H06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115999267-1	chr11	115998767	115999767	+	589.0	f1_c57bl6.idr	intron (NM_133663, intron 27 of 38)	intron (NM_133663, intron 27 of 38)	-5552.0	NR_152190	100038636.0	Mm.450138	NR_152190		B230344G16Rik	-	RIKEN cDNA B230344G16 gene	ncRNA	2.0	0.0	9.0	0.0	4.0	0.0
Merged-chr5-147052294-3	chr5	147051694	147052694	+	589.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	24378.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	0.0	0.5	3.0	0.0	4.0	1.5
Merged-chr14-62841875-2	chr14	62841375	62842375	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 1 of 11)	MTD|LTR|ERVL-MaLR	4154.0	NR_106174	102465889.0		NR_106174	ENSMUSG00000099245	Mir8098	Gm27462|mmu-mir-8098	microRNA 8098	ncRNA	0.0	8.0	7.0	3.0	17.5	9.0
Merged-chr10-59325586-2	chr10	59325086	59326086	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316370, intron 1 of 13)	intron (NM_001316370, intron 1 of 13)	2290.0	NM_001316370	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-73558262-2	chr5	73557762	73558762	+	589.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153313, exon 10 of 10)	non-coding (NR_153313, exon 10 of 10)	67236.0	NM_178896	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63499151-2	chr4	63498651	63499651	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-3160.0	NM_001008791	73750.0	Mm.300397	NM_028640	ENSMUSG00000039137	Whrn	1110035G07Rik|AW122018|AW742671|C430046P22Rik|Dfnb31|Ush2d|wi	whirlin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119318575-1	chr2	119318075	119319075	+	589.0	f1_c57bl6.idr	Intergenic	Intergenic	-7209.0	NM_019454	54485.0	Mm.143719	NM_019454	ENSMUSG00000027314	Dll4	Delta4	delta like canonical Notch ligand 4	protein-coding	0.5	8.5	0.5	1.0	2.5	2.5
Merged-chr14-58075056-1	chr14	58074556	58075556	+	589.0	f0_balb.idr	intron (NM_013518, intron 1 of 2)	CpG	2370.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8098530-3	chr3	8098001	8099001	+	589.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-143614.0	NR_040587	75476.0	Mm.491752	NR_040587	ENSMUSG00000100010	1700010I02Rik	-	RIKEN cDNA 1700010I02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128807080-1	chr6	128806580	128807580	+	589.0	f1_balb.idr	Intergenic	RLTR13D3|LTR|ERVK	-18439.0	NM_008527	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	0.0	5.0	1.5	10.0	0.0	0.0
Merged-chr1-87811717-2	chr1	87811217	87812217	+	588.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_009118, intron 3 of 15)	L1MD1|LINE|L1	8037.0	NM_009118	20215.0	Mm.1276	NM_009118	ENSMUSG00000056055	Sag	A930001K18Rik|Arr1|Irbp|arrestin	S-antigen, retina and pineal gland (arrestin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89254476-2	chr6	89253976	89254976	+	588.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31249.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170195737-3	chr2	170195220	170196220	+	588.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53045.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126799904-2	chr8	126799404	126800404	+	588.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49116.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95818835-2	chr11	95818335	95819335	+	588.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5665.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6310285-2	chr19	6309785	6310785	+	588.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033342, exon 5 of 37)	exon (NM_001033342, exon 5 of 37)	3828.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-55548005-2	chr18	55547505	55548505	+	588.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-555414.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	2.5	0.5	0.0	0.5	2.5
Merged-chr11-116033747-2	chr11	116033247	116034247	+	588.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286006, intron 1 of 15)	intron (NM_001286006, intron 1 of 15)	3431.0	NM_172569	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117481539-2	chr8	117481039	117482039	+	588.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16736.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4816785-2	chr7	4816313	4817313	+	588.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4473.0	NM_133777	77891.0	Mm.389787	NM_133777	ENSMUSG00000060860	Ube2s	0910001J09Rik|6720465F12Rik|AA409170|E2-EPF	ubiquitin-conjugating enzyme E2S	protein-coding	0.0	0.0	1.5	0.0	1.5	0.5
Merged-chr12-84611190-2	chr12	84610690	84611690	+	588.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008992, intron 7 of 18)	intron (NM_008992, intron 7 of 18)	6276.0	NM_008992	19300.0	Mm.229109	NM_008992	ENSMUSG00000021240	Abcd4	P69r|P70R|Pxmp1l	ATP-binding cassette, sub-family D (ALD), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-117851935-2	chr6	117851435	117852435	+	588.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-10089.0	NM_001360938	22685.0	Mm.249661	NM_008616	ENSMUSG00000042097	Zfp239	Mok-2|Mok2|Znf239	zinc finger protein 239	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-59114469-3	chr19	59113954	59114954	+	588.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-38385.0	NM_001114312	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122474295-1	chr3	122473795	122474795	+	588.666687	f0_balb.idr	intron (NM_013867, intron 3 of 11)	intron (NM_013867, intron 3 of 11)	-9274.0	NM_001355264	29815.0	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135725065-2	chr1	135724565	135725565	+	588.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360782, intron 1 of 5)	intron (NM_001360782, intron 1 of 5)	-4102.0	NR_153810	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-65758510-2	chr1	65758010	65759010	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-168012.0	NM_001360779	12969.0	Mm.275362	NM_027010	ENSMUSG00000025945	Crygf	3110001K11Rik|Cryg-2|DGcry-2|Len-2	crystallin, gamma F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-84720988-2	chr16	84720488	84721488	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_017404, intron 8 of 9)	intron (NM_017404, intron 8 of 9)	6848.0	NR_029565	387173.0		NR_029565	ENSMUSG00000065397	Mir155	Mirn155|mir-155|mmu-mir-155	microRNA 155	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-90129875-2	chr18	90129375	90130375	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A|LTR|ERVK	-360739.0	NM_001039173	623279.0	Mm.447164	NM_001039173	ENSMUSG00000073514	Dok6	Dok-6	docking protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171392410-3	chr1	171391789	171392789	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005508, intron 1 of 11)	intron (NM_001005508, intron 1 of 11)	3329.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	16.5	53.5	39.5	26.0	29.0	20.0
Merged-chr4-53136714-2	chr4	53136214	53137214	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 2 of 49)	intron (NM_013454, intron 2 of 49)	23181.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	1.5	2.5	5.5	1.5	2.5	5.5
Merged-chr19-23523785-2	chr19	23523285	23524285	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75463.0	NM_174857	71738.0	Mm.50841	NM_174857	ENSMUSG00000033207	Mamdc2	1200015L10Rik|AI591564|mamcan	MAM domain containing 2	protein-coding	3.0	2.0	6.5	4.5	0.0	0.0
Merged-chr1-191563054-2	chr1	191562554	191563554	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305233, intron 7 of 15)	intron (NM_001305233, intron 7 of 15)	12490.0	NM_029766	76843.0	Mm.189102	NM_029766	ENSMUSG00000037474	Dtl	2810047L02Rik|5730564G15Rik|L2dtl|Ramp	denticleless E3 ubiquitin protein ligase	protein-coding	1.5	9.0	0.0	2.5	10.0	0.0
Merged-chr4-129263851-2	chr4	129263351	129264351	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2447.0	NM_001285867	97130.0	Mm.331907	NM_001033189	ENSMUSG00000050390	C77080	mKIAA1522	expressed sequence C77080	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152661358-2	chr2	152660898	152661898	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-8063.0	NM_010376	14950.0	Mm.277327	NM_010376	ENSMUSG00000019188	H13	1200006O09Rik|4930443L17Rik|5031424B04Rik|AV020344|H-13|Hm13|PSL3|Spp	histocompatibility 13	protein-coding	8.5	0.0	12.0	11.0	10.0	7.0
Merged-chr7-127018076-2	chr7	127017576	127018576	+	588.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030240)	promoter-TSS (NM_030240)	-724.0	NM_030240	67278.0	Mm.345385	NM_030240	ENSMUSG00000107068	Pagr1a	2900092E17Rik|C77040|PA1|PAGR1	PAXIP1 associated glutamate rich protein 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117293081-2	chr8	117292581	117293581	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	ID_B1|SINE|B4	36062.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124660470-2	chr6	124659970	124660970	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2634.0	NR_149320	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96292760-2	chr3	96292250	96293250	+	588.5	f0_balb.idr|f1_balb.idr	intron (NM_010186, intron 2 of 5)	intron (NM_010186, intron 2 of 5)	1219.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	22.0	40.5	76.5	16.0	28.5	48.5
Merged-chr3-88424108-2	chr3	88423608	88424608	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281795, intron 1 of 3)	PB1D10|SINE|Alu	1033.0	NM_178696	229517.0	Mm.301740	NM_178696	ENSMUSG00000050144	Slc25a44	6720482A19|B430110G05Rik	solute carrier family 25, member 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81273518-2	chr10	81273018	81274018	+	588.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_018758)	TTS (NM_018758)	1921.0	NR_037218	100526465.0		NR_037218	ENSMUSG00000092781	Mir3057	mir-3057|mmu-mir-3057	microRNA 3057	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70885833-2	chr8	70885340	70886340	+	588.5	f0_c57.idr|f1_balb.idr	intron (NM_053248, intron 13 of 14)	intron (NM_053248, intron 13 of 14)	6917.0	NM_053248	114479.0	Mm.172923	NM_053248	ENSMUSG00000000792	Slc5a5	NIS	solute carrier family 5 (sodium iodide symporter), member 5	protein-coding	0.0	0.0	0.5	9.0	0.0	1.5
Merged-chr13-91804640-2	chr13	91804140	91805140	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145453, intron 2 of 5)	B1F2|SINE|Alu	3056.0	NM_145453	69085.0	Mm.52356	NM_145453	ENSMUSG00000021621	Zcchc9	1810019C21Rik	zinc finger, CCHC domain containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191216236-2	chr1	191215736	191216736	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8218.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70933005-2	chr9	70932505	70933505	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	MER97a|DNA|hAT-Tip100	1803.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43528357-2	chr7	43527857	43528857	+	588.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021293, exon 6 of 6)	3' UTR (NM_021293, exon 6 of 6)	4814.0	NM_001111058	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14520822-2	chr8	14520322	14521322	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 3 of 15)	intron (NM_172910, intron 3 of 15)	-367714.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13864110-2	chr16	13863610	13864610	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039533, intron 8 of 22)	RMER15|LTR|ERVL	39035.0	NM_001039533	94184.0	Mm.171484	NM_053181	ENSMUSG00000022680	Pdxdc1	2210010A19Rik|AA415817|Kiaa0251-hp	pyridoxal-dependent decarboxylase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135931790-2	chr5	135931290	135932290	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018871, intron 1 of 1)	intron (NM_018871, intron 1 of 1)	2851.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	0.0	3.5	0.5	0.0	2.5	0.5
Merged-chr19-6939343-2	chr19	6938843	6939843	+	588.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001177360, exon 2 of 5)	exon (NM_001177360, exon 2 of 5)	1850.0	NM_207220	107173.0	Mm.276555	NM_207220	ENSMUSG00000024958	Gpr137	AI428855	G protein-coupled receptor 137	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-114763544-2	chr9	114763044	114764044	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252479, intron 1 of 3)	intron (NM_001252479, intron 1 of 3)	18449.0	NM_133978	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108848947-2	chr9	108848447	108849447	+	588.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001359573, exon 35 of 36)	exon (NM_001359573, exon 35 of 36)	-5096.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	0.0	9.0	7.0	3.0	5.5	4.0
Merged-chr9-20890691-2	chr9	20890191	20891191	+	588.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_145610, exon 6 of 11)	exon (NM_145610, exon 6 of 11)	2516.0	NM_145610	235036.0	Mm.2930	NM_145610	ENSMUSG00000004100	Ppan	A230087P06Rik|SSF1	peter pan homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24865373-2	chr7	24864873	24865873	+	588.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_182785, exon 4 of 5)	exon (NM_182785, exon 4 of 5)	4318.0	NM_182785	232973.0	Mm.189648	NM_182785	ENSMUSG00000062732	Lypd4	4933400F01Rik	Ly6/Plaur domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32486746-2	chr9	32486246	32487246	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	MIRb|SINE|MIR	54706.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-90975692-2	chr1	90975192	90976192	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6072.0	NM_008998	19329.0	Mm.279780	NM_008998	ENSMUSG00000026304	Rab17	AW413472	RAB17, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-77301947-2	chr16	77301447	77302447	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27381.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13948383-1	chr10	13947883	13948883	+	588.5	f0_balb.idr	Intergenic	Intergenic	-17692.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34188794-2	chr7	34188294	34189294	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026549, intron 5 of 6)	B3A|SINE|B2	7876.0	NM_026549	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109452604-2	chr3	109452104	109453104	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	111921.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	10.5	25.5	25.0	9.0	26.5	15.0
Merged-chr3-15121120-2	chr3	15120620	15121620	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	149919.0	NR_040550	77127.0	Mm.195792	NR_040549	ENSMUSG00000098008	A930001A20Rik	-	RIKEN cDNA A930001A20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-94956492-2	chr12	94955992	94956992	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-735734.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170254038-2	chr2	170253538	170254538	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102323.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55501491-2	chr12	55500991	55501991	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8844.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-118306053-2	chr12	118305553	118306553	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4613.0	NM_001166385	20688.0	Mm.34699	NM_009239	ENSMUSG00000025323	Sp4	5730497N03Rik|HF-1b|HF1-b	trans-acting transcription factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126436581-2	chr4	126436081	126437081	+	588.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001317173, exon 19 of 19)	3' UTR (NM_001317173, exon 19 of 19)	-7039.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	2.0	5.5	0.5	0.0	0.0	0.0
Merged-chr10-4390658-2	chr10	4390158	4391158	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2550.0	NM_001033466	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0.0	12.5	1.0	0.0	3.0	3.5
Merged-chr6-93427242-2	chr6	93426742	93427742	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	485721.0	NR_104594	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7874857-2	chr9	7874357	7875357	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1687.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-15876910-1	chr3	15876410	15877410	+	588.5	f0_balb.idr	Intergenic	Lx4A|LINE|L1	-28423.0	NM_001173459	100038947.0	Mm.330924	NM_001173459	ENSMUSG00000074677	LOC100038947	-	signal-regulatory protein beta 1-like	protein-coding	0.0	0.0	4.0	2.0	16.5	12.0
Merged-chr18-75170652-2	chr18	75170152	75171152	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027727, intron 13 of 16)	intron (NM_027727, intron 13 of 16)	126665.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45945166-2	chr9	45944666	45945666	+	588.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172257, exon 15 of 26)	exon (NM_172257, exon 15 of 26)	-5576.0	NR_106055	102465659.0		NR_106055	ENSMUSG00000098327	Mir7087	Gm27273|mmu-mir-7087	microRNA 7087	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16826068-2	chr7	16825568	16826568	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039878, intron 4 of 17)	intron (NM_001039878, intron 4 of 17)	-9336.0	NM_173430	243853.0	Mm.39703	NM_173430	ENSMUSG00000048920	Fkrp	A830029B19Rik|AI842067|AI847300|LGMD1I|MDC1C	fukutin related protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-140287251-2	chr4	140286751	140287751	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40440.0	NM_198610	230868.0	Mm.298731	NM_198610	ENSMUSG00000040972	Igsf21	BC055811|Gm141	immunoglobulin superfamily, member 21	protein-coding	3.0	1.0	1.5	6.5	1.0	0.5
Merged-chr14-45540349-2	chr14	45539849	45540849	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3361.0	NR_045809	67651.0	Mm.55930	NR_045809	ENSMUSG00000115324	4930527F14Rik	-	RIKEN cDNA 4930527F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59293735-1	chr10	59293235	59294235	+	588.5	f1_c57bl6.idr	Intergenic	Intergenic	-29561.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12634676-2	chr18	12634176	12635176	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8857.0	NM_028341	72747.0	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55414904-2	chr12	55414404	55415404	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310583, intron 6 of 6)	(CAAAA)n|Simple_repeat|Simple_repeat	16079.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67010626-2	chr10	67010126	67011126	+	588.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001204915, exon 9 of 9)	3' UTR (NM_001204915, exon 9 of 9)	5551.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88290746-2	chr7	88290239	88291239	+	588.5	f0_c57.idr|f1_c57bl6.idr	3' UTR (NM_001311790, exon 4 of 4)	3' UTR (NM_001311790, exon 4 of 4)	12654.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77589434-2	chr10	77588934	77589934	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145925, intron 2 of 5)	intron (NM_145925, intron 2 of 5)	7779.0	NM_145925	108705.0	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540|PBF	pituitary tumor-transforming 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81281003-2	chr10	81280537	81281537	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013769, intron 5 of 20)	ZP3AR|Satellite|Satellite	4744.0	NM_001282096	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-3749994-2	chr6	3749475	3750475	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042725, intron 3 of 14)	intron (NM_001042725, intron 3 of 14)	13648.0	NM_001042725	12311.0	Mm.4642	NM_007588	ENSMUSG00000023964	Calcr	Clr|Ct-r	calcitonin receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63983706-2	chr9	63983206	63984206	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	38353.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107565285-2	chr9	107564785	107565785	+	588.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019742, exon 3 of 3)	3' UTR (NM_019742, exon 3 of 3)	2030.0	NM_019742	80385.0	Mm.21739	NM_019742	ENSMUSG00000010054	Tusc2	1190001E22Rik|AA407686|Fus1|Lgcc|PAP|Pdap2	tumor suppressor candidate 2	protein-coding	6.0	12.0	3.0	6.0	12.0	3.0
Merged-chr1-153451399-2	chr1	153450899	153451899	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033162, intron 9 of 9)	intron (NM_001033162, intron 9 of 9)	26190.0	NM_001033162	71836.0	Mm.49460	NM_001033162	ENSMUSG00000042708	Shcbp1l	1700012A16Rik	Shc SH2-domain binding protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120050671-2	chr8	120050171	120051171	+	588.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_030209, exon 15 of 15)	3' UTR (NM_030209, exon 15 of 15)	50801.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143690166-2	chr7	143689666	143690666	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199227, intron 21 of 21)	intron (NM_001199227, intron 21 of 21)	-4291.0	NR_131763	79201.0	Mm.290780	NM_024290	ENSMUSG00000037613	Tnfrsf23	SOB|TNFRSFH23|Tnfrh1|Tnfrsf1al1|mDcTRAILR1|mSOB	tumor necrosis factor receptor superfamily, member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77110547-2	chr9	77110047	77111047	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027150, intron 7 of 7)	Lx7|LINE|L1	-64766.0	NR_136923	26944.0	Mm.23199	NM_012033	ENSMUSG00000032357	Tinag	AI452335|TIN-ag	tubulointerstitial nephritis antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122404915-1	chr7	122404415	122405415	+	588.5	f0_balb.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	115790.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-16769662-2	chr9	16769162	16770162	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-391431.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8536965-2	chr4	8536477	8537477	+	588.5	f0_c57.idr|f1_c57bl6.idr	intron (NM_021518, intron 1 of 7)	intron (NM_021518, intron 1 of 7)	1333.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	4.0	1.5	4.5	2.5	5.0	4.5
Merged-chr8-94358986-2	chr8	94358486	94359486	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019415, intron 24 of 24)	intron (NM_019415, intron 24 of 24)	-27443.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26962220-2	chr2	26961720	26962720	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207234, intron 2 of 7)	L2a|LINE|L2	2166.0	NM_207234	227656.0	Mm.291874	NM_207234	ENSMUSG00000052406	Rexo4	Gm111|Rex4|Xpmc2h	REX4, 3'-5' exonuclease	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60742223-2	chr10	60741723	60742723	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 2 of 5)	intron (NM_023596, intron 2 of 5)	10559.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101365219-2	chr15	101364719	101365719	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028770, intron 1 of 8)	ID_B1|SINE|B4	-4133.0	NR_035462	100316694.0		NR_035462	ENSMUSG00000088459	Mir1941	mmu-mir-1941	microRNA 1941	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87887796-2	chr3	87887296	87888296	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2234.0	NM_033573	94315.0	Mm.35089	NM_033573	ENSMUSG00000004895	Prcc	-	papillary renal cell carcinoma (translocation-associated)	protein-coding	0.0	1.5	0.0	0.0	1.5	0.0
Merged-chr4-119107934-2	chr4	119107472	119108472	+	588.416626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011400)	promoter-TSS (NM_011400)	-773.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	2.5	17.0	4.5	1.0	6.5	0.0
Merged-chr17-87251861-2	chr17	87251361	87252361	+	588.366699	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14086.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68094266-2	chr10	68093781	68094781	+	588.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114711.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	0.0	1.0	7.0	0.0	1.5	1.5
Merged-chr12-84196672-2	chr12	84196172	84197172	+	588.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	-2657.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-28664059-3	chr19	28663548	28664548	+	588.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175459, intron 2 of 10)	intron (NM_175459, intron 2 of 10)	-14176.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-143188816-2	chr4	143188316	143189316	+	588.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001256380, intron 2 of 7)	intron (NM_001256380, intron 2 of 7)	23893.0	NM_001081355	110593.0	Mm.332020	NM_001081355	ENSMUSG00000057637	Prdm2	4833427P12Rik|E330024L24Rik|Gm1033|Gm19732|KMT8|Riz|Riz1|Znfpr1c1	PR domain containing 2, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153109929-2	chr2	153109500	153110500	+	588.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 1 of 12)	intron (NM_001172117, intron 1 of 12)	1532.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	0.0	8.5	3.0	0.0	0.0	0.0
Merged-chr15-36606041-2	chr15	36605541	36606541	+	588.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008774, intron 1 of 14)	intron (NM_008774, intron 1 of 14)	2932.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121290329-2	chr3	121289876	121290876	+	588.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1364.0	NR_155539	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	0.0	4.5	1.5	0.0	6.0	3.5
Merged-chr1-106035123-2	chr1	106034623	106035623	+	588.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44717.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87734774-2	chr11	87734274	87735274	+	588.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172448, exon 10 of 10)	3' UTR (NM_172448, exon 10 of 10)	-2777.0	NM_001355753	20922.0	Mm.622	NM_009296	ENSMUSG00000020485	Supt4a	AL022777|Supt4h|Supt4h1|Supt4h1a	suppressor of Ty 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116139356-2	chr6	116138856	116139856	+	588.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 1 of 5)	B2_Mm2|SINE|B2	54018.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98846370-2	chr15	98845829	98846829	+	588.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033276, exon 40 of 55)	exon (NM_001033276, exon 40 of 55)	-14821.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-40400252-2	chr6	40399752	40400752	+	588.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35883.0	NM_001356375	243780.0	Mm.333006	NM_175528	ENSMUSG00000037172	E330009J07Rik	AI841796|Lchn|mKIAA1147	RIKEN cDNA E330009J07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11593539-4	chr2	11593022	11594022	+	588.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152824, intron 5 of 11)	intron (NM_152824, intron 5 of 11)	9677.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11544526-2	chr8	11544026	11545026	+	588.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359137, intron 3 of 14)	B3|SINE|B2	6245.0	NM_024248	71941.0	Mm.196576	NM_024248	ENSMUSG00000056228	Cars2	2310051N18Rik|2410044A07Rik|D530030H10Rik|cysRS	cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70190545-2	chr8	70190045	70191045	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001007570, intron 3 of 7)	intron (NM_001007570, intron 3 of 7)	18137.0	NR_122028	234371.0	Mm.23488	NM_145597	ENSMUSG00000002342	Tmem161a	AI428876|BB161850|BC021367	transmembrane protein 161A	protein-coding	0.0	3.5	0.0	0.0	0.0	0.0
Merged-chr14-25482026-2	chr14	25481526	25482526	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	B4A|SINE|B4	22841.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20128583-2	chr13	20128083	20129083	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	38076.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.0	7.5	11.5	4.0	14.0	10.0
Merged-chr14-54646008-1	chr14	54645508	54646508	+	588.0	f1_balb.idr	intron (NM_019567, intron 6 of 12)	intron (NM_019567, intron 6 of 12)	-2898.0	NR_105913	102466771.0		NR_105913	ENSMUSG00000106169	Mir6948	mmu-mir-6948	microRNA 6948	ncRNA	1.5	7.5	4.5	0.0	9.0	0.0
Merged-chr2-152821209-1	chr2	152820709	152821709	+	588.0	f0_balb.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	7280.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27556281-2	chr15	27555781	27556781	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020332, intron 3 of 11)	MTD|LTR|ERVL-MaLR	-15213.0	NR_106065	102466808.0		NR_106065	ENSMUSG00000098416	Mir7117	Gm27729|mmu-mir-7117	microRNA 7117	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-54531623-2	chr8	54531118	54532118	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A|LTR|ERVK	-1620.0	NM_029701	76687.0	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik|SPC22/23	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87947139-1	chr3	87946639	87947639	+	588.0	f1_balb.idr	Intergenic	Intergenic	-1554.0	NM_007759	12904.0	Mm.4757	NM_007759	ENSMUSG00000004885	Crabp2	AI893628|Crabp-2|CrabpII	cellular retinoic acid binding protein II	protein-coding	0.0	0.0	0.0	0.0	1.5	0.0
Merged-chr2-116063065-1	chr2	116062565	116063565	+	588.0	f0_balb.idr	intron (NM_001136072, intron 2 of 12)	intron (NM_001136072, intron 2 of 12)	1554.0	NM_001346044	17536.0	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr6-115666315-2	chr6	115665815	115666815	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029780, intron 1 of 16)	B3A|SINE|B2	9573.0	NM_001356334	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57445252-2	chr17	57444752	57445752	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 15 of 22)	intron (NM_001355722, intron 15 of 22)	86566.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120752468-2	chr1	120751968	120752968	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	149981.0	NM_010133	13798.0	Mm.2657	NM_010133	ENSMUSG00000058665	En1	En-1|Mo-en.1|engrailed-1	engrailed 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-81005678-2	chr5	81005178	81006178	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-14893.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106740802-2	chr11	106740301	106741301	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-10425.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	1.0	6.0	0.5	3.5	3.5	2.0
Merged-chr9-32150337-2	chr9	32149837	32150837	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195632, intron 2 of 21)	Looper|DNA|PiggyBac	34201.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141861549-1	chr4	141861049	141862049	+	588.0	f1_balb.idr	intron (NM_025994, intron 2 of 3)	intron (NM_025994, intron 2 of 3)	13371.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	8.5	4.5	25.5	19.5	15.0	10.5
Merged-chr12-64967792-2	chr12	64967289	64968289	+	588.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177805, exon 1 of 20)	exon (NM_177805, exon 1 of 20)	2047.0	NM_177805	328108.0	Mm.138465	NM_177805	ENSMUSG00000035614	Togaram1	A430041B07Rik|BC062107|C130034K06|Fam179b|mKIAA0423	TOG array regulator of axonemal microtubules 1	protein-coding	1.0	4.0	3.5	0.0	2.5	4.5
Merged-chr11-101625123-1	chr11	101624623	101625623	+	588.0	f1_c57bl6.idr	Intergenic	RLTR9D|LTR|ERVK	-2826.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141622252-1	chr4	141621752	141622752	+	588.0	f1_balb.idr	exon (NM_001013780, exon 3 of 5)	exon (NM_001013780, exon 3 of 5)	1582.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	5.0	0.5	6.5	3.5	2.0	3.5
Merged-chr12-110817655-2	chr12	110817155	110818155	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011973, intron 4 of 11)	B2_Mm2|SINE|B2	23284.0	NM_011973	26448.0	Mm.140948	NM_011973	ENSMUSG00000056458	Mok	RAGE1|Rage|Stk30	MOK protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30063730-2	chr2	30063230	30064230	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023871, intron 1 of 7)	intron (NM_023871, intron 1 of 7)	1734.0	NM_023871	56086.0	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64177903-1	chr13	64177403	64178403	+	588.0	f1_c57bl6.idr	intron (NM_019986, intron 5 of 7)	intron (NM_019986, intron 5 of 7)	16037.0	NM_019986	56541.0	Mm.40989	NM_019986	ENSMUSG00000021476	Habp4	4933413D03Rik|4933428J01Rik	hyaluronic acid binding protein 4	protein-coding	0.0	0.5	0.0	12.0	4.5	1.0
Merged-chr4-133871985-1	chr4	133871485	133872485	+	588.0	f1_c57bl6.idr	exon (NM_001285506, exon 2 of 21)	exon (NM_001285506, exon 2 of 21)	2746.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	14.0	16.0	11.5	11.0	21.0	14.5
Merged-chr2-167918845-2	chr2	167918345	167919345	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16C|LTR|ERVL	-13482.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-86859884-1	chr10	86859384	86860384	+	588.0	f1_balb.idr	intron (NM_138673, intron 56 of 68)	intron (NM_138673, intron 56 of 68)	80879.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr11-120626292-2	chr11	120625792	120626792	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1290.0	NM_153056	209011.0	Mm.292957	NM_153056	ENSMUSG00000025138	Sirt7	-	sirtuin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8975063-1	chr3	8974563	8975563	+	588.0	f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-10917.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	28.0	57.0	39.0	33.5	27.0	22.5
Merged-chr3-27346194-2	chr3	27345694	27346694	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-25157.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45216175-2	chr7	45215675	45216675	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285498, intron 1 of 11)	intron (NM_001285498, intron 1 of 11)	422.0	NM_001285498	21677.0	Mm.3019	NM_011565	ENSMUSG00000030796	Tead2	ETEF-1|ETF|Etdf|TEAD-2|TEF-4|TEF4	TEA domain family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-61269286-2	chr19	61268848	61269848	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB7_2B-LTR_MM|LTR|ERVK	-40930.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0.0	0.5	1.0	2.0	0.0	0.0
Merged-chr18-16464595-2	chr18	16464095	16465095	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	344651.0	NM_007664	12558.0	Mm.257437	NM_007664	ENSMUSG00000024304	Cdh2	CDHN|N-CAD|Ncad	cadherin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83631226-2	chr7	83630726	83631726	+	588.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023377)	promoter-TSS (NM_023377)	-791.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-25597613-1	chr16	25597113	25598113	+	588.0	f0_c57.idr	Intergenic	L1_Mur3|LINE|L1	-86152.0	NM_001127259	22061.0	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27961939-1	chr17	27961439	27962439	+	588.0	f0_balb.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	52633.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	0.5	2.5	0.5	3.5	9.5	5.0
Merged-chr5-117149224-1	chr5	117148724	117149724	+	588.0	f0_balb.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	15636.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	9.0	22.0	14.0	0.0	6.5	6.5
Merged-chr15-81747781-1	chr15	81747281	81748281	+	588.0	f1_balb.idr	intron (NM_001081016, intron 1 of 22)	B3A|SINE|B2	2933.0	NM_001081016	20286.0	Mm.432075	NM_001081016	ENSMUSG00000022390	Zc3h7b	Gm627|Scrg3|Zc2h7b|mKIAA1031	zinc finger CCCH type containing 7B	protein-coding	0.0	13.0	0.0	0.0	12.5	0.0
Merged-chr18-53861500-1	chr18	53861000	53862000	+	588.0	f0_balb.idr	promoter-TSS (NM_152809)	promoter-TSS (NM_152809)	-613.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114726042-2	chr11	114725542	114726542	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-1370.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123974763-1	chr5	123974263	123975263	+	588.0	f1_c57bl6.idr	intron (NM_145070, intron 1 of 31)	intron (NM_145070, intron 1 of 31)	1135.0	NM_145070	29816.0	Mm.149954	NM_145070	ENSMUSG00000000915	Hip1r	AA410023|mKIAA0655	huntingtin interacting protein 1 related	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101411345-2	chr7	101410842	101411842	+	588.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027180, exon 30 of 30)	3' UTR (NM_027180, exon 30 of 30)	-10349.0	NM_001008548	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	0.0	0.0	0.0	0.0	5.0	0.0
Merged-chr11-50290326-2	chr11	50289826	50290826	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 1 of 4)	intron (NM_175334, intron 1 of 4)	2010.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90256460-2	chr16	90255960	90256960	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346799, intron 7 of 19)	intron (NM_001346799, intron 7 of 19)	28026.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19096695-2	chr7	19096195	19097195	+	588.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011383, exon 2 of 3)	exon (NM_011383, exon 2 of 3)	2151.0	NM_011383	20475.0	Mm.3410	NM_011383	ENSMUSG00000040841	Six5	Dmahp|MDMAHP|TrexBF	sine oculis-related homeobox 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37585144-2	chr1	37584644	37585644	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44128.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128673228-1	chr10	128672728	128673728	+	588.0	f0_balb.idr	intron (NM_173733, intron 1 of 3)	intron (NM_173733, intron 1 of 3)	690.0	NM_173733	211389.0	Mm.23352	NM_173733	ENSMUSG00000049858	Suox	SO	sulfite oxidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133664480-1	chr4	133663980	133664980	+	588.0	f1_balb.idr	intron (NM_001145956, intron 2 of 2)	intron (NM_001145956, intron 2 of 2)	8167.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	2.5	4.0	2.0	1.0	4.0	7.5
Merged-chr15-37941619-3	chr15	37941124	37942124	+	588.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357023, intron 5 of 8)	intron (NM_001357023, intron 5 of 8)	19232.0	NM_001357023	382985.0	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139603516-1	chr4	139603016	139604016	+	588.0	f1_c57bl6.idr	intron (NM_001205173, intron 2 of 8)	intron (NM_001205173, intron 2 of 8)	-19378.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	5.5	8.0	18.5	0.0	0.0	2.0
Merged-chr13-40869334-3	chr13	40868826	40869826	+	588.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023887, intron 1 of 2)	intron (NM_023887, intron 1 of 2)	9558.0	NM_023887	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47448684-2	chr19	47448157	47449157	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	15754.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0.0	2.0	3.0	5.0	11.5	3.5
Merged-chr2-164387520-1	chr2	164387020	164388020	+	588.0	f1_c57bl6.idr	Intergenic	Intergenic	-15674.0	NM_009036	19668.0	Mm.473794	NM_009036	ENSMUSG00000017007	Rbpjl	RBP-L|Rbpsuhl	recombination signal binding protein for immunoglobulin kappa J region-like	protein-coding	0.0	3.5	0.0	0.0	0.5	0.0
Merged-chr15-73422066-2	chr15	73421566	73422566	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358046, intron 1 of 34)	intron (NM_001358046, intron 1 of 34)	1125.0	NM_007982	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87808774-2	chr6	87808274	87809274	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_104478, intron 1 of 2)	MIRc|SINE|MIR	983.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	18.0	29.0	22.5	16.0	28.0	20.5
Merged-chr11-89037213-1	chr11	89036713	89037713	+	588.0	f1_c57bl6.idr	TTS (NM_019505)	TTS (NM_019505)	23535.0	NM_019505	56077.0	Mm.153695	NM_019505	ENSMUSG00000000276	Dgke	C87606|DAGK6|DGK	diacylglycerol kinase, epsilon	protein-coding	2.5	3.0	2.0	4.5	0.0	0.0
Merged-chr6-103527152-2	chr6	103526652	103527652	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007697, intron 1 of 26)	intron (NM_007697, intron 1 of 26)	16276.0	NM_007697	12661.0	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75704215-2	chr7	75703715	75704715	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 16 of 36)	intron (NM_029332, intron 16 of 36)	-144123.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156960123-1	chr2	156959623	156960623	+	588.0	f0_balb.idr	intron (NM_001355394, intron 1 of 15)	Lx3_Mus|LINE|L1	31580.0	NM_001355391	29812.0	Mm.279256	NM_013865	ENSMUSG00000027634	Ndrg3	4833415O14Rik|AI747193|Ndr3	N-myc downstream regulated gene 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-47272935-2	chr4	47272435	47273435	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 14 of 39)	intron (NM_009928, intron 14 of 39)	64923.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90617719-1	chr3	90617219	90618219	+	588.0	f0_c57.idr	Intergenic	B3A|SINE|B2	4825.0	NM_011313	20200.0	Mm.100144	NM_011313	ENSMUSG00000001025	S100a6	2A9|5B10|CALCYCLIN|Cacy|PRA	S100 calcium binding protein A6 (calcyclin)	protein-coding	0.5	0.0	3.0	0.5	0.0	3.0
Merged-chr1-39526565-2	chr1	39526065	39527065	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9136.0	NM_028043	52846.0	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160849901-2	chr2	160849401	160850401	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177263, intron 1 of 3)	intron (NM_177263, intron 1 of 3)	23089.0	NM_177263	320799.0	Mm.436734	NM_177263	ENSMUSG00000035877	Zhx3	1810059C13Rik|4932418O04Rik|9530010N21Rik|Tix1|mKIAA0395	zinc fingers and homeoboxes 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-10368323-2	chr14	10367823	10368823	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 5 of 9)	intron (NM_001360141, intron 5 of 9)	85135.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122441952-2	chr8	122441452	122442452	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028354, intron 1 of 10)	L1MDa|LINE|L1	1470.0	NM_138656	192156.0	Mm.28146	NM_138656	ENSMUSG00000006517	Mvd	C78718|Mpd	mevalonate (diphospho) decarboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81348737-2	chr10	81348237	81349237	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163165, intron 4 of 9)	intron (NM_001163165, intron 4 of 9)	1689.0	NM_001163165	15353.0	Mm.38474	NM_010440	ENSMUSG00000020232	Hmg20b	AW610687|BRAF35|Hmgx2|Hmgxb2|Smarce1r	high mobility group 20B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67187813-1	chr18	67187313	67188313	+	588.0	f1_balb.idr	intron (NM_177137, intron 4 of 11)	intron (NM_177137, intron 4 of 11)	-17546.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	5.0	5.5	3.5	7.0	7.5	2.5
Merged-chr10-46862750-1	chr10	46862250	46863250	+	588.0	f1_balb.idr	Intergenic	L1_Mus2|LINE|L1	618001.0	NR_028276	108637.0		NR_028276	ENSMUSG00000096263	Snord14c	Gm23107|Rnu14|U14	small nucleolar RNA, C/D box 14C	snoRNA	4.0	0.0	3.0	6.0	2.0	1.0
Merged-chr1-191909346-2	chr1	191908846	191909846	+	588.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009579, exon 2 of 2)	exon (NM_009579, exon 2 of 2)	-1819.0	NR_030669	98736.0	Mm.379232	NM_001024489	ENSMUSG00000055833	1700034H15Rik	4930557M11Rik|BB016121	RIKEN cDNA 1700034H15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145308498-2	chr6	145307988	145308988	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57936.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	24.0	78.0	59.5	3.0	67.5	28.0
Merged-chr4-51504697-2	chr4	51504197	51505197	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	288019.0	NM_001162865	74914.0	Mm.159368	NM_001162865	ENSMUSG00000039555	Cylc2	4930488P18Rik	cylicin, basic protein of sperm head cytoskeleton 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-110950491-1	chr8	110949991	110950991	+	588.0	f0_balb.idr	intron (NM_009179, intron 1 of 6)	intron (NM_009179, intron 1 of 6)	30626.0	NM_009179	20444.0	Mm.200388	NM_009179	ENSMUSG00000031749	St3gal2	AI429591|AW822065|ST3GalII|Siat5	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10457530-1	chr19	10457030	10458030	+	588.0	f1_balb.idr	promoter-TSS (NM_001111140)	promoter-TSS (NM_001111140)	-83.0	NM_001111140	278795.0	Mm.490638	NM_001111140	ENSMUSG00000090291	Lrrc10b	Gm705|SerdinR	leucine rich repeat containing 10B	protein-coding	0.0	2.0	0.0	0.0	3.0	0.0
Merged-chr9-32211277-1	chr9	32210777	32211777	+	588.0	f0_balb.idr	intron (NM_001195632, intron 10 of 21)	MTC|LTR|ERVL-MaLR	-12972.0	NM_177379	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88445198-2	chr3	88444698	88445698	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013658, intron 10 of 14)	L2a|LINE|L2	-4247.0	NR_105978	102465611.0		NR_105978	ENSMUSG00000098655	Mir7011	Gm27677|mmu-mir-7011	microRNA 7011	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105844414-3	chr5	105843969	105844969	+	588.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32099.0	NR_030777	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70713612-1	chr17	70713112	70714112	+	588.0	f1_c57bl6.idr	intron (NM_001360665, intron 9 of 14)	intron (NM_001360665, intron 9 of 14)	133165.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	1.5	0.0	0.0	0.0	8.0	0.0
Merged-chr16-55748055-2	chr16	55747555	55748555	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	74083.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105794568-1	chr3	105794068	105795068	+	588.0	f1_balb.idr	intron (NM_145541, intron 1 of 7)	intron (NM_145541, intron 1 of 7)	6813.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	7.0	5.5	7.5	3.5	0.5	6.5
Merged-chr4-108067527-2	chr4	108067027	108068027	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011327, intron 12 of 15)	intron (NM_011327, intron 12 of 15)	-19830.0	NR_105823	102465213.0		NR_105823	ENSMUSG00000098980	Mir6397	Gm28004|mmu-mir-6397	microRNA 6397	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12763189-2	chr18	12762689	12763689	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252490, intron 8 of 13)	intron (NM_001252490, intron 8 of 13)	21834.0	NM_027687	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-137081195-2	chr2	137080695	137081695	+	588.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013822)	TTS (NM_013822)	35325.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19224594-1	chr7	19224094	19225094	+	588.0	f1_c57bl6.idr	TTS (NM_175668)	TTS (NM_175668)	-3795.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	1.0	8.0	1.0	3.0	8.0	7.0
Merged-chr10-68274546-1	chr10	68274046	68275046	+	588.0	f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	4180.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	14.0	76.5	37.5	21.0	61.0	34.0
Merged-chr1-40786275-1	chr1	40785775	40786775	+	588.0	f0_balb.idr	intron (NM_172499, intron 2 of 5)	intron (NM_172499, intron 2 of 5)	4382.0	NM_172499	211798.0	Mm.235443	NM_172499	ENSMUSG00000041945	Mfsd9	4931419K03Rik	major facilitator superfamily domain containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-116765603-2	chr14	116765103	116766103	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-159694.0	NM_001079844	23888.0	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141868561-1	chr4	141868061	141869061	+	588.0	f1_c57bl6.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	6359.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	7.0	20.0	23.5	28.0	42.5	13.0
Merged-chr8-72160363-2	chr8	72159862	72160862	+	588.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023126)	promoter-TSS (NM_023126)	-838.0	NM_023126	17274.0	Mm.162811	NM_023126	ENSMUSG00000003037	Rab8a	AA409338|Mel	RAB8A, member RAS oncogene family	protein-coding	66.0	153.0	161.5	76.5	107.0	129.5
Merged-chr11-120767266-2	chr11	120766766	120767766	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16938.0	NM_009053	19719.0	Mm.871	NM_009053	ENSMUSG00000025158	Rfng	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99771623-1	chr15	99771123	99772123	+	588.0	f0_balb.idr	intron (NM_028015, intron 1 of 9)	intron (NM_028015, intron 1 of 9)	892.0	NM_028015	71949.0	Mm.390821	NM_028015	ENSMUSG00000023021	Cers5	2310081H14Rik|AU045339|AW544927|Lass5|Trh4	ceramide synthase 5	protein-coding	14.0	0.5	0.0	0.0	5.0	3.0
Merged-chr6-120627241-1	chr6	120626741	120627741	+	588.0	f1_balb.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-39180.0	NM_001128151	330409.0	Mm.333357	NM_001128151	ENSMUSG00000071226	Cecr2	2610101O16Rik|2810409N01Rik|Gtl4|mKIAA1740	CECR2, histone acetyl-lysine reader	protein-coding	0.0	1.0	0.0	0.0	1.5	3.0
Merged-chr12-99240262-1	chr12	99239762	99240762	+	588.0	f0_balb.idr	intron (NM_183186, intron 4 of 5)	intron (NM_183186, intron 4 of 5)	-77454.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-104290379-2	chr13	104289879	104290879	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_136938, intron 1 of 26)	intron (NR_136938, intron 1 of 26)	2544.0	NM_001081020	108154.0	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25825373-2	chr15	25824873	25825873	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17925.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126551985-2	chr7	126551485	126552485	+	588.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_146200, exon 16 of 21)	exon (NM_146200, exon 16 of 21)	14381.0	NM_146200	56347.0	Mm.22776	NM_146200	ENSMUSG00000030738	Eif3c	110kDa|3230401O13Rik|Eif3s8|NIPIL(A3)|NipilA3|Xs|Xsl	eukaryotic translation initiation factor 3, subunit C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84980804-2	chr18	84980304	84981304	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015798, intron 9 of 9)	intron (NM_015798, intron 9 of 9)	-29280.0	NM_025969	67105.0	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	translocase of inner mitochondrial membrane 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74526303-2	chr17	74525803	74526803	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-1992.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	0.0	6.0	0.0	6.0	0.0	2.5
Merged-chr18-42216981-2	chr18	42216481	42217481	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134137, intron 26 of 31)	intron (NM_134137, intron 26 of 31)	-20272.0	NM_027072	69401.0	Mm.34841	NM_027072	ENSMUSG00000059455	Plac8l1	1700009N18Rik|1700015M15Rik	PLAC8-like 1	protein-coding	6.0	0.0	0.0	1.0	0.5	0.5
Merged-chr2-118927309-1	chr2	118926809	118927809	+	588.0	f1_balb.idr	exon (NM_028117, exon 1 of 1)	exon (NM_028117, exon 1 of 1)	812.0	NM_028117	72136.0	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	11.5	5.0	5.5	1.0	3.5	2.5
Merged-chr15-80738393-2	chr15	80737893	80738893	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144812, intron 1 of 24)	intron (NM_144812, intron 1 of 24)	27080.0	NM_144812	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75707217-1	chr2	75706717	75707717	+	588.0	f1_balb.idr	Intergenic	Intergenic	-2554.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0.5	3.5	2.5	0.0	1.0	0.0
Merged-chr9-25027811-2	chr9	25027311	25028311	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53603.0	NR_153861	102631612.0	Mm.410759	NR_153861		E130101E03Rik	-	RIKEN cDNA E130101E03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121036465-2	chr9	121035965	121036965	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177589, intron 35 of 36)	intron (NM_177589, intron 35 of 36)	81379.0	NR_106058	102465661.0		NR_106058	ENSMUSG00000106193	Mir7090	mmu-mir-7090	microRNA 7090	ncRNA	0.0	0.5	2.0	0.0	0.0	4.5
Merged-chr3-90451591-2	chr3	90451091	90452091	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008727, intron 20 of 21)	B3A|SINE|B2	14275.0	NM_008727	18160.0	Mm.4627	NM_008727	ENSMUSG00000027931	Npr1	AI893888|GC-A|NPR-A|NPRA|Pndr	natriuretic peptide receptor 1	protein-coding	13.5	1.0	6.5	13.5	1.0	6.5
Merged-chr13-109610032-2	chr13	109609542	109610542	+	588.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	285298.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	7.0	0.0	2.5	1.0	0.0	3.0
Merged-chr11-50024078-2	chr11	50023578	50024578	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1253.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156715729-2	chr2	156715229	156716229	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040505, intron 3 of 3)	intron (NR_040505, intron 3 of 3)	5180.0	NR_040505	74846.0	Mm.443946	NR_040505	ENSMUSG00000086638	4930405A21Rik	-	RIKEN cDNA 4930405A21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70863615-1	chr9	70863115	70864115	+	588.0	f0_balb.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	71193.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57794095-2	chr10	57793595	57794595	+	588.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020561)	promoter-TSS (NM_020561)	-449.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87617005-1	chr17	87616505	87617505	+	588.0	f0_balb.idr	Intergenic	Intergenic	-18974.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	3.0	11.5	1.5	2.5	8.5	2.0
Merged-chr4-43529309-2	chr4	43528809	43529809	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5755.0	NM_001277875	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	0.5	0.0	2.0	0.5	0.0	2.0
Merged-chr1-105702202-1	chr1	105701702	105702702	+	588.0	f1_c57bl6.idr	intron (NM_173187, intron 10 of 28)	intron (NM_173187, intron 10 of 28)	38341.0	NM_029349	227446.0	Mm.337339	NM_029349	ENSMUSG00000026319	2310035C23Rik	6430401N10|Kiaa1468|Relch|mKIAA1468	RIKEN cDNA 2310035C23 gene	protein-coding	0.0	3.0	1.5	2.0	6.5	6.0
Merged-chr9-13484690-1	chr9	13484190	13485190	+	588.0	f0_balb.idr	Intergenic	Intergenic	53329.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	7.0	2.5	6.5	2.0	7.0	6.5
Merged-chr16-36933651-2	chr16	36933151	36934151	+	588.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_030035)	TTS (NM_030035)	-1332.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-108691582-2	chr5	108691082	108692082	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	-2647.0	NM_001164259	116701.0	Mm.35691	NM_054071	ENSMUSG00000008090	Fgfrl1	FGFR5|FGFR5beta|FGFR5gamma	fibroblast growth factor receptor-like 1	protein-coding	0.0	9.5	0.5	0.0	0.0	3.5
Merged-chr6-142736610-2	chr6	142736110	142737110	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	-20076.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-9513393-2	chr18	9512893	9513893	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F3|LINE|L1	-63239.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97500517-2	chr11	97500017	97501017	+	588.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289118)	promoter-TSS (NM_001289118)	-177.0	NM_001289118	100141474.0	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156014289-1	chr2	156013789	156014789	+	588.0	f1_balb.idr	intron (NM_025516, intron 7 of 12)	intron (NM_025516, intron 7 of 12)	6261.0	NM_001356413	66366.0	Mm.141276	NM_025516	ENSMUSG00000005881	Ergic3	2310015B14Rik|AV318804|CGI-54|D2Ucla1|NY-BR-84|Sdbcag84	ERGIC and golgi 3	protein-coding	0.0	0.0	1.5	0.0	8.0	0.0
Merged-chr12-102298006-2	chr12	102297506	102298506	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	14365.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0.0	1.5	0.5	5.0	6.0	2.5
Merged-chr13-10856129-1	chr13	10855629	10856629	+	588.0	f1_c57bl6.idr	Intergenic	Intergenic	-495326.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5844425-2	chr2	5843925	5844925	+	588.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016918)	promoter-TSS (NM_016918)	-609.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	0.0	19.0	12.0	9.5	15.0	17.0
Merged-chr6-101762786-2	chr6	101762286	101763286	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26B_MM|LTR|ERVK	-11463.0	NR_027989	207157.0	Mm.57632	NM_177579	ENSMUSG00000052236	Gm9871	0610005I04|EG207157	predicted gene 9871	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25627780-2	chr14	25627280	25628280	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 6 of 23)	intron (NM_183208, intron 6 of 23)	24267.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	0.0	8.5	1.0	0.0	0.0	0.0
Merged-chr9-56936221-2	chr9	56935721	56936721	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1279.0	NM_133976	102462.0	Mm.12864	NM_133976	ENSMUSG00000032288	Imp3	1190002L16Rik|AI256594	IMP3, U3 small nucleolar ribonucleoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141478572-1	chr4	141478072	141479072	+	588.0	f1_c57bl6.idr	exon (NM_019763, exon 12 of 16)	exon (NM_019763, exon 12 of 16)	33899.0	NM_009541	22642.0	Mm.389590	NM_009541	ENSMUSG00000006215	Zbtb17	AA589413|Lp-1|Miz1|Zfp100|mZ13	zinc finger and BTB domain containing 17	protein-coding	50.0	65.0	53.5	13.0	13.5	39.0
Merged-chr15-36980318-2	chr15	36979818	36980818	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27084.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94913684-2	chr8	94913184	94914184	+	588.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033533, exon 2 of 9)	5' UTR (NM_001033533, exon 2 of 9)	4414.0	NM_001033533	234582.0	Mm.277871	NM_001033533	ENSMUSG00000063605	Ccdc102a	BC027663|Gm586	coiled-coil domain containing 102A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88757208-2	chr8	88756713	88757713	+	588.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	60185.0	NM_001128171	74256.0	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	0.0	3.0	0.0	0.0	1.0	3.0
Merged-chr7-89168770-3	chr7	89168276	89169276	+	587.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 6 of 14)	intron (NM_001360746, intron 6 of 14)	170011.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	1.0	3.0	0.0	6.0	0.0	0.0
Merged-chr7-49066402-2	chr7	49065902	49066902	+	587.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	95756.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98868411-2	chr15	98867911	98868911	+	587.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033276, intron 1 of 54)	intron (NM_001033276, intron 1 of 54)	2794.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-126708086-2	chr2	126707586	126708586	+	587.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_019729, intron 1 of 18)	intron (NM_019729, intron 1 of 18)	758.0	NM_019729	84092.0	Mm.272629	NM_019729	ENSMUSG00000027363	Usp8	AI574262|AW557536|Ubpy|mKIAA0055	ubiquitin specific peptidase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108771246-2	chr3	108770746	108771746	+	587.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_177859, intron 6 of 11)	intron (NM_177859, intron 6 of 11)	31588.0	NM_177859	329738.0	Mm.72322	NM_177859	ENSMUSG00000049565	Aknad1	4921525H12Rik	AKNA domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32198726-2	chr5	32198226	32199226	+	587.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33982.0	NM_030072	665270.0	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25042992-2	chr2	25042492	25043492	+	587.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_146251, intron 25 of 34)	intron (NM_146251, intron 25 of 34)	-11387.0	NM_001177654	56876.0	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12208563-2	chr15	12208063	12209063	+	587.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356498, intron 1 of 15)	intron (NM_001356498, intron 1 of 15)	3535.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141070579-2	chr7	141070079	141071079	+	587.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_177897, exon 15 of 20)	exon (NM_177897, exon 15 of 20)	-7650.0	NM_001162924	56460.0	Mm.350037	NM_019762	ENSMUSG00000054065	Pkp3	2310056L12Rik	plakophilin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-30268975-2	chr11	30268487	30269487	+	587.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49215.0	NM_175836	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr17-36197996-2	chr17	36197496	36198496	+	587.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7845.0	NM_008208	15043.0	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-56860422-3	chr6	56859919	56860919	+	587.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012056, intron 5 of 9)	intron (NM_012056, intron 5 of 9)	28360.0	NM_012056	27055.0	Mm.20943	NM_012056	ENSMUSG00000029781	Fkbp9	1810014L23|AW549641|FKBP-63|FKBP-9|FKBP60|FKBP63|FKBP65RS	FK506 binding protein 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-168430322-3	chr1	168429830	168430830	+	587.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183355, intron 1 of 8)	intron (NM_183355, intron 1 of 8)	1839.0	NM_001291509	18514.0	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105056697-3	chr5	105056173	105057173	+	587.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3112.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126975860-2	chr8	126975360	126976360	+	587.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3578.0	NR_151744	629746.0	Mm.264954	NR_151744		Gm29688	-	predicted gene, 29688	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126752924-2	chr7	126752424	126753424	+	587.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-6702.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16211016-2	chr7	16210523	16211523	+	587.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_027883, intron 6 of 16)	intron (NM_027883, intron 6 of 16)	10970.0	NM_001285931	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	3.5	2.0	19.5	3.0	0.0	4.5
Merged-chr15-99704476-2	chr15	99703976	99704976	+	587.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_031842, intron 5 of 12)	intron (NM_031842, intron 5 of 12)	2189.0	NM_031842	83797.0	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81412382-3	chr10	81411891	81412891	+	587.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_152732)	TTS (NR_152732)	2816.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65957905-2	chr5	65957405	65958405	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-9219.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0.0	2.5	3.5	4.0	0.0	1.0
Merged-chr9-108690385-2	chr9	108689885	108690885	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1758.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	9.5	20.5	8.5	16.5	16.0	9.5
Merged-chr8-111334538-2	chr8	111334038	111335038	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310613, intron 1 of 10)	B3|SINE|B2	3667.0	NM_001310613	74568.0	Mm.207971	NM_029005	ENSMUSG00000012519	Mlkl	9130019I15Rik	mixed lineage kinase domain-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31307266-2	chr17	31306766	31307766	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001242427, intron 2 of 19)	intron (NM_001242427, intron 2 of 19)	11042.0	NM_001242427	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40837795-2	chr12	40837295	40838295	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 50 of 52)	intron (NM_172803, intron 50 of 52)	-186295.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44534427-2	chr7	44533927	44534927	+	587.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011131, exon 22 of 27)	exon (NM_011131, exon 22 of 27)	-2356.0	NM_019866	272382.0	Mm.8012	NM_019866	ENSMUSG00000008193	Spib	Spi-B	Spi-B transcription factor (Spi-1/PU.1 related)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-118425314-2	chr5	118424814	118425814	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-135405.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4324664-2	chr18	4324164	4325164	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28289.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148873204-2	chr2	148872704	148873704	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009976, intron 1 of 2)	intron (NM_009976, intron 1 of 2)	2308.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	1.0	1.0	0.5	3.5	0.0	2.0
Merged-chr6-38696909-2	chr6	38696409	38697409	+	587.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001294144)	TTS (NM_001294144)	33840.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105702772-2	chr4	105702272	105703272	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-538441.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38270527-2	chr15	38270027	38271027	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29373.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86905342-2	chr12	86904842	86905842	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20528.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20629839-2	chr16	20629339	20630339	+	587.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177942)	promoter-TSS (NM_177942)	-12.0	NM_177942	107522.0	Mm.263319	NM_139293	ENSMUSG00000022842	Ece2	1810009K13Rik|6330509A19Rik|9630025D12Rik|BB127715|Ece-2|Eef1akmt4-Ece2	endothelin converting enzyme 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94122662-2	chr16	94122162	94123162	+	587.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011377, exon 9 of 11)	exon (NM_011377, exon 9 of 11)	37402.0	NM_011377	20465.0	Mm.4775	NM_011377	ENSMUSG00000062713	Sim2	bHLHe15	single-minded family bHLH transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84385555-2	chr17	84385055	84386055	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 26 of 37)	intron (NM_183021, intron 26 of 37)	80653.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26906242-2	chr2	26905742	26906742	+	587.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011513, exon 3 of 3)	3' UTR (NM_011513, exon 3 of 3)	-3355.0	NM_009298	20935.0	Mm.245577	NM_009298	ENSMUSG00000036160	Surf6	D2Wsu129e|Surf-6	surfeit gene 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39416524-2	chr6	39416024	39417024	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018810, intron 1 of 7)	intron (NM_018810, intron 1 of 7)	3252.0	NM_001311109	54484.0	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149446044-2	chr4	149445544	149446544	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8924.0	NM_022020	63954.0	Mm.46023	NM_022020	ENSMUSG00000028996	Rbp7	1110002J23Rik|CRBP-III	retinol binding protein 7, cellular	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59841691-2	chr13	59841191	59842191	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18544.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0.0	10.0	3.0	2.0	4.0	3.5
Merged-chr8-105341090-2	chr8	105340590	105341590	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	6880.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-73792548-2	chr16	73792048	73793048	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	549519.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57195074-2	chr17	57194574	57195574	+	587.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019418)	promoter-TSS (NM_019418)	-893.0	NM_019418	50930.0	Mm.483369	NM_019418	ENSMUSG00000005824	Tnfsf14	HVEM-L|HVEML|LIGHT|LTg|Ly113|Tnlg1d	tumor necrosis factor (ligand) superfamily, member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126229516-2	chr4	126229016	126230016	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	26803.0	NM_144941	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	0.0	0.0	1.0	0.0	6.0	3.5
Merged-chr10-78353371-2	chr10	78352871	78353871	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1671.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34827239-2	chr2	34826720	34827720	+	587.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013890)	promoter-TSS (NM_013890)	-985.0	NM_001164772	30050.0	Mm.4465	NM_013890	ENSMUSG00000035949	Fbxw2	2700071L08Rik|FBW2|Fwd2|MD6	F-box and WD-40 domain protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122394589-2	chr5	122394089	122395089	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019824, intron 1 of 6)	ID_B1|SINE|B4	2711.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-56147578-2	chr13	56147078	56148078	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-12028.0	NM_001159513	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-127584598-2	chr5	127584098	127585098	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32794.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-75436183-2	chr16	75435683	75436683	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	149878.0	NM_001252513	320355.0	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-146478900-2	chr4	146478400	146479400	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-23100.0	NM_001243138	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84072850-2	chr3	84072350	84073350	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32689.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-109923293-2	chr12	109922793	109923793	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	175415.0	NR_037233	100499517.0		NR_037233	ENSMUSG00000093351	Mir3072	mir-3072|mmu-mir-3072	microRNA 3072	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112580092-2	chr12	112579592	112580592	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8692.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27726518-1	chr15	27726018	27727018	+	587.5	f0_balb.idr	Intergenic	Intergenic	-44976.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32922109-2	chr2	32921609	32922609	+	587.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_146119, exon 10 of 14)	exon (NM_146119, exon 10 of 14)	39146.0	NM_199302	227738.0	Mm.248037	NM_199302	ENSMUSG00000026792	Lrsam1	-	leucine rich repeat and sterile alpha motif containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84645120-2	chr2	84644620	84645620	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007615, intron 1 of 19)	intron (NM_007615, intron 1 of 19)	4360.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	4.0	17.0	15.5	5.0	14.5	15.5
Merged-chr5-3150169-2	chr5	3149669	3150669	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-193724.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-109083267-2	chr9	109082767	109083767	+	587.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183250)	promoter-TSS (NM_183250)	771.0	NM_025689	66658.0	Mm.128227	NM_025689	ENSMUSG00000025645	Ccdc51	5730568A12Rik|AI551049	coiled-coil domain containing 51	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113488437-2	chr13	113487937	113488937	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 1 of 6)	RMER19C|LTR|ERVK	14407.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-59994872-2	chr1	59994372	59995372	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357296, intron 10 of 10)	intron (NM_001357296, intron 10 of 10)	48250.0	NM_001357296	70375.0	Mm.17834	NM_027407	ENSMUSG00000026018	Ica1l	1700030B17Rik|Als2cr15|b2b3465Clo	islet cell autoantigen 1-like	protein-coding	1.5	0.0	0.0	1.5	0.0	0.0
Merged-chr2-180223255-2	chr2	180222755	180223755	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081171, intron 1 of 78)	intron (NM_001081171, intron 1 of 78)	2604.0	NM_001081171	16776.0	Mm.4339	NM_001081171	ENSMUSG00000015647	Lama5	AA408760|AA408762|AI853660|[a]5|laminin-511|mKIAA0533	laminin, alpha 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-110338852-2	chr10	110338352	110339352	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-261798.0	NR_028438	109335.0	Mm.367727	NR_028438	ENSMUSG00000112398	9230102K24Rik	-	RIKEN cDNA 9230102K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-100208488-2	chr6	100207988	100208988	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78870.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39002646-1	chr6	39002146	39003146	+	587.5	f0_balb.idr	intron (NM_011539, intron 5 of 12)	intron (NM_011539, intron 5 of 12)	64940.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-25537013-2	chr18	25536513	25537513	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362304, intron 3 of 12)	B2_Mm1t|SINE|B2	142735.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83451197-2	chr8	83450663	83451663	+	587.5	f0_balb.idr|f0_c57.idr	intron (NM_001039137, intron 1 of 3)	intron (NM_001039137, intron 1 of 3)	7233.0	NM_001039137	56367.0	Mm.246911	NM_019708	ENSMUSG00000063253	Scoc	0610011C06Rik|2810002J11Rik|AA415030|SCOCO	short coiled-coil protein	protein-coding	0.5	0.0	1.5	0.0	0.0	0.0
Merged-chr17-10113110-2	chr17	10112610	10113610	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	206251.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-31031386-2	chr7	31030886	31031886	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	8931.0	NR_106017	102465635.0		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	6.5	28.0	4.5	8.0	26.0	6.0
Merged-chr15-24197521-2	chr15	24197021	24198021	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	1161058.0	NM_001081299	320865.0	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l|Tg(GFAP-APOE_i4)1Hol	cadherin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-86410980-2	chr5	86410480	86411480	+	587.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033233, exon 9 of 9)	3' UTR (NM_001033233, exon 9 of 9)	-37593.0	NM_145561	231382.0	Mm.240139	NM_145561	ENSMUSG00000061259	Tmprss11d	AST|AsP|BC020151	transmembrane protease, serine 11d	protein-coding	0.0	0.5	0.0	0.0	0.5	0.0
Merged-chr19-16254386-2	chr19	16253886	16254886	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 2 of 6)	intron (NM_008139, intron 2 of 6)	60618.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37666982-2	chr13	37666482	37667482	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-159056.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61552587-2	chr8	61552087	61553087	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	38582.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92371823-2	chr5	92371333	92372333	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-8537.0	NR_038116	56066.0	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	5.0	1.0	5.5	1.5	8.0	9.0
Merged-chr18-90132984-2	chr18	90132484	90133484	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-363848.0	NM_001039173	623279.0	Mm.447164	NM_001039173	ENSMUSG00000073514	Dok6	Dok-6	docking protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58932097-2	chr15	58931597	58932597	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175151, intron 1 of 11)	B1_Mus1|SINE|Alu	1633.0	NM_175151	69694.0	Mm.383230	NM_175151	ENSMUSG00000050891	Tatdn1	2310079P03Rik|CDA11	TatD DNase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54930592-2	chr11	54930092	54931092	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271456, intron 8 of 18)	intron (NM_001271456, intron 8 of 18)	27738.0	NM_008161	14778.0	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76705042-2	chr15	76704542	76705542	+	587.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027122)	TTS (NM_027122)	3500.0	NM_027122	69572.0	Mm.34920	NM_027122	ENSMUSG00000019080	Mfsd3	2310010G13Rik	major facilitator superfamily domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156449223-1	chr1	156448723	156449723	+	587.5	f0_balb.idr	intron (NM_009230, intron 3 of 15)	intron (NM_009230, intron 3 of 15)	25105.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	13.5	33.5	20.5	26.5	99.5	74.5
Merged-chr9-123538318-2	chr9	123537818	123538818	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357485, intron 1 of 19)	intron (NM_001357485, intron 1 of 19)	8565.0	NM_030692	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-127228634-2	chr6	127228134	127229134	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77586.0	NM_009829	12444.0	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-172447437-2	chr2	172446937	172447937	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025542, intron 5 of 8)	intron (NM_025542, intron 5 of 8)	6859.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120094234-2	chr8	120093734	120094734	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133967, intron 1 of 7)	intron (NM_133967, intron 1 of 7)	7238.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119612258-2	chr13	119611758	119612758	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-11561.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-111879409-1	chr2	111878909	111879909	+	587.5	f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-5556.0	NM_146401	258396.0	Mm.377480	NM_146401	ENSMUSG00000074955	Olfr1305	MOR245-8	olfactory receptor 1305	protein-coding	0.0	4.0	0.0	0.0	0.0	0.0
Merged-chr15-100660551-2	chr15	100660051	100661051	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270537, intron 2 of 10)	intron (NM_001270537, intron 2 of 10)	8949.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	2.5	0.0	0.0	0.0	0.0	1.5
Merged-chr13-91225587-2	chr13	91225087	91226087	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1600.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117295824-2	chr8	117295324	117296324	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	38805.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62495115-2	chr4	62494615	62495615	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138653, intron 5 of 6)	intron (NM_138653, intron 5 of 6)	7085.0	NM_024257	72748.0	Mm.41506	NM_024257	ENSMUSG00000038422	Hdhd3	2810435D12Rik	haloacid dehalogenase-like hydrolase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128370100-2	chr10	128369600	128370600	+	587.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081040)	promoter-TSS (NM_001081040)	-63.0	NM_001081040	210582.0	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120527145-2	chr5	120526645	120527645	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 11 of 13)	B1_Mus1|SINE|Alu	15953.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0.0	0.0	0.0	0.5	3.0	0.0
Merged-chr14-57098207-2	chr14	57097707	57098707	+	587.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008125)	TTS (NM_008125)	6495.0	NM_008125	14619.0	Mm.390683	NM_008125	ENSMUSG00000046352	Gjb2	AI325222|Cnx26|Cx26|Gjb-2	gap junction protein, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-98147149-2	chr3	98146649	98147649	+	587.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010928, exon 34 of 34)	exon (NM_010928, exon 34 of 34)	-13485.0	NM_027665	71078.0	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58360096-1	chr11	58359596	58360596	+	587.5	f0_balb.idr	Intergenic	Intergenic	-18936.0	NM_027339	70163.0	Mm.24119	NM_027339	ENSMUSG00000013643	Lypd8	2210415F13Rik	LY6/PLAUR domain containing 8	protein-coding	1.5	4.0	2.0	3.5	10.5	5.5
Merged-chr13-42565397-2	chr13	42564897	42565897	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115402.0	NM_001302635	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90173467-2	chr16	90172967	90173967	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	31230.0	NR_033476	100038709.0	Mm.484070	NR_033476		Gm10789	-	predicted gene 10789	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-127331926-2	chr8	127331426	127332426	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013580, intron 3 of 13)	B3|SINE|B2	32274.0	NM_001013580	93742.0	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20882223-2	chr10	20881723	20882723	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-70324.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	2.0	5.5	3.5	3.0	3.5	3.5
Merged-chr4-3686451-2	chr4	3685951	3686951	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	8330.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	31.0	99.0	53.0	19.0	78.5	45.0
Merged-chr3-94502457-2	chr3	94501957	94502957	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082484, intron 10 of 11)	intron (NM_001082484, intron 10 of 11)	18099.0	NR_151857	78784.0	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|ETR-1|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80740376-2	chr10	80739876	80740876	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007460, intron 1 of 30)	intron (NM_007460, intron 1 of 30)	1899.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80887000-2	chr12	80886500	80887500	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	37447.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	0.0	0.0	0.0	2.0	3.5	0.0
Merged-chr17-63371028-2	chr17	63370528	63371528	+	587.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 5 of 8)	intron (NM_015794, intron 5 of 8)	-58055.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128269873-2	chr10	128269373	128270373	+	587.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019963)	promoter-TSS (NM_019963)	-625.0	NM_019963	20847.0	Mm.293120	NM_019963	ENSMUSG00000040033	Stat2	1600010G07Rik|AW496480	signal transducer and activator of transcription 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61666150-2	chr11	61665650	61666650	+	587.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027817, intron 3 of 4)	intron (NM_027817, intron 3 of 4)	12829.0	NM_027817	71520.0	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128264074-1	chr10	128263574	128264574	+	587.333313	f1_c57bl6.idr	Intergenic	Intergenic	-3923.0	NM_133997	103161.0	Mm.26513	NM_133997	ENSMUSG00000047631	Apof	AI255964	apolipoprotein F	protein-coding	1.0	6.0	7.0	1.0	6.5	1.5
Merged-chr10-100030915-3	chr10	100030412	100031412	+	587.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347156, intron 1 of 8)	intron (NM_001347156, intron 1 of 8)	15091.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3670583-2	chr8	3670079	3671079	+	587.25	f0_balb.idr|f0_c57.idr	TTS (NM_001357661)	TTS (NM_001357661)	1812.0	NM_001357661	100503924.0	Mm.415621	NM_001357661	ENSMUSG00000089665	Fcor	2400009B08Rik	Foxo1 corepressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116649947-2	chr4	116649421	116650421	+	587.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_021473, intron 1 of 8)	B1_Mus1|SINE|Alu	1753.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-65692425-2	chr7	65691925	65692925	+	587.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026795)	promoter-TSS (NM_026795)	-992.0	NM_178056	68634.0	Mm.476828	NM_026795	ENSMUSG00000078681	Tm2d3	1110025I09Rik|5930422O05Rik|Blp2	TM2 domain containing 3	protein-coding	0.0	0.0	0.5	0.0	0.5	1.5
Merged-chr9-14722053-2	chr9	14721553	14722553	+	587.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_177905, intron 8 of 18)	intron (NM_177905, intron 8 of 18)	18680.0	NM_177905	330890.0	Mm.334969	NM_177905	ENSMUSG00000036912	Piwil4	9230101H05Rik|Miwi2	piwi-like RNA-mediated gene silencing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-52047290-3	chr9	52046761	52047761	+	587.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001104617)	promoter-TSS (NM_001104617)	111.0	NM_001104616	19684.0	Mm.245746	NM_009041	ENSMUSG00000032050	Rdx	AA516625	radixin	protein-coding	14.0	18.5	18.0	4.0	21.0	18.5
Merged-chr8-24432758-2	chr8	24432258	24433258	+	587.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6188.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-42083882-2	chr9	42083382	42084382	+	587.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011436, intron 5 of 47)	intron (NM_011436, intron 5 of 47)	-6669.0	NM_001357261	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0.0	18.5	0.0	6.0	2.0	1.5
Merged-chr10-80176493-2	chr10	80175979	80176979	+	587.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-3003.0	NM_007909	13637.0	Mm.1478	NM_007909	ENSMUSG00000003070	Efna2	CEK7L|Elf1|Epl6|Eplg6|Lerk6	ephrin A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-48903075-3	chr11	48902592	48903592	+	587.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024230)	promoter-TSS (NM_001024230)	-940.0	NM_001024230	432555.0	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-5366708-2	chr12	5366208	5367208	+	587.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164493, intron 1 of 13)	intron (NM_001164493, intron 1 of 13)	8974.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	0.0	0.5	1.0	0.0	0.0	0.0
Merged-chr17-47442352-2	chr17	47441842	47442842	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145489, intron 1 of 4)	intron (NM_145489, intron 1 of 4)	-4967.0	NM_029296	75462.0	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	7.0	2.0	8.5	0.0	0.0	4.5
Merged-chr19-25069396-2	chr19	25068896	25069896	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 4 of 47)	B3A|SINE|B2	69867.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99450108-1	chr9	99449608	99450608	+	587.0	f0_balb.idr	Intergenic	Intergenic	-6135.0	NM_001165957	623534.0	Mm.484967	NM_001165957		Nme9	Txndc6	NME/NM23 family member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34985400-2	chr17	34984900	34985900	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204273, intron 5 of 5)	intron (NM_001204273, intron 5 of 5)	3270.0	NM_030597	27756.0	Mm.165735	NM_030597	ENSMUSG00000007050	Lsm2	D17H6S56E-2|D17H6S56E2|Dmapl|Dmpkap|G7b|Sm-X5|SmX5|snRNP	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70532160-1	chr8	70531660	70532660	+	587.0	f1_c57bl6.idr	intron (NM_001111066, intron 5 of 8)	intron (NM_001111066, intron 5 of 8)	4314.0	NM_001199631	14232.0	Mm.141864	NM_010223	ENSMUSG00000019428	Fkbp8	38kDa|FKBP-38|FKBP-8|FKBPR38|Fkbp38|mFKBP38	FK506 binding protein 8	protein-coding	0.0	0.0	1.0	3.0	0.0	4.5
Merged-chr7-132994477-2	chr7	132993977	132994977	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170744, intron 4 of 8)	intron (NM_001170744, intron 4 of 8)	20770.0	NM_001170744	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0.0	0.0	2.5	0.0	0.0	1.0
Merged-chr9-81626087-1	chr9	81625587	81626587	+	587.0	f0_balb.idr	Intergenic	Intergenic	-5843.0	NR_040394	319405.0	Mm.246494	NR_040393	ENSMUSG00000097466	D430036J16Rik	-	RIKEN cDNA D430036J16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-137246683-2	chr7	137246183	137247183	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113415, intron 6 of 15)	intron (NM_001113415, intron 6 of 15)	12000.0	NR_045885	100038555.0	Mm.444788	NR_045885	ENSMUSG00000109722	Gm10578	-	predicted gene 10578	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32127535-2	chr12	32127035	32128035	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66256.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	1.0	10.5	0.0	0.0	0.0	1.5
Merged-chr11-107328739-2	chr11	107328239	107329239	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	-139358.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34283831-1	chr19	34283331	34284331	+	587.0	f0_c57.idr	Intergenic	Intergenic	-6828.0	NM_007987	14102.0	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	5.0	13.5	28.0	8.0	13.5	2.5
Merged-chr8-126464183-1	chr8	126463683	126464683	+	587.0	f0_c57.idr	intron (NM_001159907, intron 4 of 29)	RMER20A|LTR|ERVK	10882.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	1.5	2.5	1.5	0.5	3.5	0.0
Merged-chr12-55467774-2	chr12	55467274	55468274	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24873.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167470567-2	chr2	167470067	167471067	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304542, intron 12 of 15)	intron (NM_001304542, intron 12 of 15)	-22078.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-123360383-1	chr7	123359883	123360883	+	587.0	f0_c57.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	9532.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44636978-2	chr10	44636444	44637444	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-178196.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129575552-2	chr6	129575052	129576052	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2734.0	NM_153590	243655.0	Mm.30968	NM_153590	ENSMUSG00000050241	Klre1	Klre-1|NKG2I	killer cell lectin-like receptor family E member 1	protein-coding	2.0	4.5	0.0	6.0	5.0	2.5
Merged-chr17-32115409-2	chr17	32114909	32115909	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23986.0	NR_027316	435518.0	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-70976455-2	chr5	70975955	70976955	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008066, intron 8 of 9)	Lx4A|LINE|L1	119394.0	NM_008066	14395.0	Mm.5304	NM_008066	ENSMUSG00000000560	Gabra2	C630048P16Rik|Gabra-2	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-8658906-2	chr8	8658406	8659406	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010111, intron 1 of 4)	intron (NM_010111, intron 1 of 4)	1867.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46519667-2	chr18	46519167	46520167	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173423, intron 2 of 2)	Lx6|LINE|L1	6304.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-3200866-2	chr6	3200366	3201366	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	SSU-rRNA_Hsa|rRNA|rRNA	-87653.0	NR_036696	667335.0	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-108331238-1	chr10	108330738	108331738	+	587.0	f1_balb.idr	promoter-TSS (NM_054056)	promoter-TSS (NM_054056)	-951.0	NM_054056	114774.0	Mm.391419	NM_054056	ENSMUSG00000035873	Pawr	2310001G03Rik|PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding	0.0	0.5	1.5	0.0	0.0	1.5
Merged-chr11-44414055-1	chr11	44413555	44414555	+	587.0	f1_balb.idr	3' UTR (NM_001303244, exon 8 of 8)	3' UTR (NM_001303244, exon 8 of 8)	13992.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	11.0	28.5	13.5	5.5	20.5	20.5
Merged-chr4-44753737-2	chr4	44753237	44754237	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2822.0	NM_138590	319885.0	Mm.331576	NM_138590	ENSMUSG00000035649	Zcchc7	4930572I07Rik|D4Wsu132e	zinc finger, CCHC domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-130774188-2	chr7	130773688	130774688	+	587.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081038, exon 1 of 16)	5' UTR (NM_001081038, exon 1 of 16)	119.0	NM_001081038	330660.0	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9262803-2	chr13	9262303	9263303	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13722.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35803017-2	chr16	35802518	35803518	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152314, intron 3 of 8)	RMER17A2|LTR|ERVK	32632.0	NM_175111	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	0.0	0.5	0.5	0.0	3.5	2.5
Merged-chr9-104164201-1	chr9	104163701	104164701	+	587.0	f1_c57bl6.idr	intron (NM_001359740, intron 52 of 56)	intron (NM_001359740, intron 52 of 56)	-37558.0	NM_145700	252837.0	Mm.269254	NM_145700	ENSMUSG00000079355	Ackr4	A630091E18Rik|CCBP2|CCR11|CCX-CKR|CCX-CKR1|Ccrl1|Cmkbrl1|PPR1|VSHK1	atypical chemokine receptor 4	protein-coding	0.0	0.0	2.0	4.0	0.0	0.0
Merged-chr11-6625181-1	chr11	6624681	6625681	+	587.0	f1_balb.idr	5' UTR (NM_001130457, exon 2 of 13)	5' UTR (NM_001130457, exon 2 of 13)	886.0	NM_001130457	21379.0	Mm.247761	NM_134011	ENSMUSG00000000384	Tbrg4	2310042P22Rik|AA120735|AA408001|AI527316|Cpr2|R74877|Tb-12|mKIAA0948	transforming growth factor beta regulated gene 4	protein-coding	0.0	0.0	0.0	0.0	3.0	0.5
Merged-chr19-15993183-1	chr19	15992683	15993683	+	587.0	f1_balb.idr	intron (NR_045355, intron 2 of 2)	MLT1C|LTR|ERVL-MaLR	8108.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	0.0	0.0	1.0	1.0	4.5	0.0
Merged-chr11-83740314-2	chr11	83739814	83740814	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-6626.0	NM_183249	66107.0	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-12991310-1	chr7	12990810	12991810	+	587.0	f1_c57bl6.idr	exon (NM_009512, exon 5 of 10)	exon (NM_009512, exon 5 of 10)	6882.0	NM_009512	26459.0	Mm.10984	NM_009512	ENSMUSG00000030382	Slc27a5	FACVL3|FATP5|VLCS-H2|VLCSH2|Vlacsr	solute carrier family 27 (fatty acid transporter), member 5	protein-coding	0.5	3.5	6.5	0.0	0.0	0.5
Merged-chr1-52129922-3	chr1	52129449	52130449	+	587.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205313, intron 5 of 24)	intron (NM_001205313, intron 5 of 24)	10327.0	NM_001205313	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-166341935-2	chr1	166341435	166342435	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37232.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121362602-2	chr10	121362102	121363102	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2488.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	3.0	6.0	1.5	3.0	5.0	0.0
Merged-chr4-150743068-2	chr4	150742568	150743568	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90894.0	NM_173774	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21036777-2	chr9	21036277	21037277	+	587.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008319, exon 8 of 11)	exon (NM_008319, exon 8 of 11)	-4449.0	NR_035438	100316681.0		NR_035438	ENSMUSG00000084663	Mir1900	Mirn1900|mmu-mir-1900	microRNA 1900	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-22806120-2	chr2	22805620	22806620	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	31793.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100538115-2	chr15	100537615	100538615	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355497, intron 2 of 15)	B1_Mur4|SINE|Alu	13893.0	NM_033476	21422.0	Mm.219040	NM_033476	ENSMUSG00000009733	Tfcp2	CP-2|CP2|D230015P20Rik|LBP-1c|LBP-1d|LBP1|LSF|Tcfcp2|UBP-1	transcription factor CP2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117084574-2	chr11	117084074	117085074	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7226.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118877209-1	chr9	118876709	118877709	+	587.0	f1_c57bl6.idr	exon (NM_133721, exon 26 of 28)	exon (NM_133721, exon 26 of 28)	-49327.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	3.5	4.0	0.5	11.0	3.5	2.0
Merged-chr12-85482060-2	chr12	85481560	85482560	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8170.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-70932993-1	chr16	70932493	70933493	+	587.0	f0_balb.idr	Intergenic	Intergenic	-198083.0	NR_040561	70972.0	Mm.399391	NR_040561		4931420L22Rik	-	RIKEN cDNA 4931420L22 gene	ncRNA	0.0	1.5	1.0	14.0	2.0	1.0
Merged-chr14-76505526-1	chr14	76505026	76506026	+	587.0	f0_balb.idr	intron (NM_001310647, intron 2 of 2)	intron (NM_001310647, intron 2 of 2)	1016.0	NM_009366	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	9.5	15.5	22.0	43.5	65.0	79.5
Merged-chr13-101698774-2	chr13	101698274	101699274	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 7 of 15)	intron (NM_001077495, intron 7 of 15)	-6144.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-14293091-1	chr10	14292591	14293591	+	587.0	f0_balb.idr	Intergenic	ERVB4_2-LTR_MM|LTR|ERVK	251945.0	NM_001002268	215798.0	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	9.0	4.5	3.5	9.0	3.0	3.5
Merged-chr9-41044050-1	chr9	41043550	41044550	+	587.0	f1_c57bl6.idr	intron (NM_176860, intron 4 of 13)	intron (NM_176860, intron 4 of 13)	35456.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	3.0	0.0	3.0	2.5	2.5	2.0
Merged-chr5-25760605-1	chr5	25760105	25761105	+	587.0	f0_balb.idr	intron (NM_001310504, intron 1 of 10)	intron (NM_001310504, intron 1 of 10)	632.0	NM_001004365	242894.0	Mm.150319	NM_001004365	ENSMUSG00000056367	Actr3b	9630005C02|ARP11|AW047569|Arp3b|Arp3beta	ARP3 actin-related protein 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-81533902-1	chr17	81533402	81534402	+	587.0	f0_balb.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	204485.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113868624-2	chr13	113868124	113869124	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	74116.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24696759-1	chr17	24696259	24697259	+	587.0	f1_balb.idr	promoter-TSS (NM_023040)	promoter-TSS (NM_023040)	525.0	NM_001357836	71893.0	Mm.390971	NM_027988	ENSMUSG00000019320	Noxo1	2310034C04Rik|P41NOX|P41NOXA|P41NOXB|P41NOXC|Snx28|hslt	NADPH oxidase organizer 1	protein-coding	2.0	14.5	7.5	2.0	15.5	3.5
Merged-chr18-84712976-2	chr18	84712476	84713476	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7168.0	NM_173770	240479.0	Mm.472378	NM_173770	ENSMUSG00000047992	Fam69c	B230399E16Rik	family with sequence similarity 69, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26530548-1	chr17	26530048	26531048	+	587.0	f1_c57bl6.idr	Intergenic	Intergenic	-22076.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	31.5	35.0	11.0	14.5	22.0	12.5
Merged-chr3-136793723-1	chr3	136793223	136794223	+	587.0	f0_balb.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	123657.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-133494951-2	chr2	133494451	133495451	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57208.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-104591169-2	chr11	104590669	104591669	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	13888.0	NM_001355755	17896.0	Mm.390355	NM_010858	ENSMUSG00000061086	Myl4	ALC1|AMLC|ELC|ELC1a|GT1|MLC1EMB|MLC1a|Myla	myosin, light polypeptide 4	protein-coding	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr1-127850257-1	chr1	127849757	127850757	+	587.0	f0_balb.idr	Intergenic	Intergenic	-9967.0	NM_011737	22625.0	Mm.246566	NM_011737	ENSMUSG00000051590	Map3k19	Ysk4	mitogen-activated protein kinase kinase kinase 19	protein-coding	1.0	7.5	2.5	0.0	3.5	5.5
Merged-chr3-89246937-3	chr3	89246455	89247455	+	587.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310625, intron 2 of 4)	intron (NM_001310625, intron 2 of 4)	482.0	NM_001310625	66059.0	Mm.177991	NM_025327	ENSMUSG00000042747	Krtcap2	0610010I12Rik|Kcp2	keratinocyte associated protein 2	protein-coding	0.0	5.0	0.0	0.0	2.5	0.0
Merged-chr16-38729368-2	chr16	38728868	38729868	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12891.0	NR_152434	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-33847045-2	chr1	33846545	33847545	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERVK10D3_I-int|LTR|ERVK	-8131.0	NM_001161816	433287.0	Mm.383632	NM_001161816		Gm15455	AA692849	predicted gene 15455	protein-coding	9.0	0.0	1.5	9.0	0.0	1.5
Merged-chr10-79887049-2	chr10	79886549	79887549	+	587.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_015779, exon 3 of 5)	exon (NM_015779, exon 3 of 5)	737.0	NM_015779	50701.0	Mm.262194	NM_015779	ENSMUSG00000020125	Elane	Ela2|F430011M15Rik|NE	elastase, neutrophil expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102816357-2	chr2	102815857	102816857	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 13 of 13)	intron (NM_001039150, intron 13 of 13)	-69597.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	86.0	107.0	118.5	82.5	134.0	90.5
Merged-chr19-29684326-2	chr19	29683826	29684826	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13615.0	NM_029993	77836.0	Mm.138437	NM_029993	ENSMUSG00000024806	Mlana	A930034P04Rik|Mart1	melan-A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86572593-2	chr11	86572093	86573093	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11565.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129636206-2	chr2	129635706	129636706	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	40744.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	7.5	26.0	5.5	12.0	2.0	3.0
Merged-chr11-80163930-2	chr11	80163430	80164430	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 5 of 10)	intron (NM_172133, intron 5 of 10)	9768.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-43348071-2	chr11	43347571	43348571	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26390.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-61839696-1	chr3	61839196	61840196	+	587.0	f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	475189.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	3.5	4.0	1.5	0.0	2.5	1.5
Merged-chr10-111378367-2	chr10	111377867	111378867	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	79688.0	NM_027914	71769.0	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-17250091-1	chr3	17249591	17250591	+	587.0	f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	432997.0	NR_153388	102632048.0	Mm.417635	NR_153388		Gm30223	-	predicted gene, 30223	ncRNA	0.0	3.5	8.0	0.0	2.5	3.5
Merged-chr13-101909897-2	chr13	101909397	101910397	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1-int|LTR|ERVL-MaLR	-141680.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10035685-2	chr17	10035185	10036185	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-259819.0	NR_045433	71092.0	Mm.243827	NR_045433		4930452A19Rik	4933424P20Rik	RIKEN cDNA 4930452A19 gene	ncRNA	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr6-148579080-1	chr6	148578580	148579580	+	587.0	f0_balb.idr	Intergenic	Intergenic	35229.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73660472-2	chr12	73659972	73660972	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	75676.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120783176-2	chr11	120782676	120783676	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009053, intron 3 of 7)	intron (NM_009053, intron 3 of 7)	1028.0	NM_009053	19719.0	Mm.871	NM_009053	ENSMUSG00000025158	Rfng	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93793959-2	chr16	93793459	93794459	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151466, intron 1 of 1)	B1_Mus1|SINE|Alu	942.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73815972-2	chr13	73815472	73816472	+	587.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011390, exon 24 of 24)	3' UTR (NM_011390, exon 24 of 24)	31659.0	NM_028186	72293.0	Mm.45506	NM_028186	ENSMUSG00000021567	Nkd2	2210403L10Rik|AW212591|mNkd2	naked cuticle 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5788257-2	chr19	5787757	5788757	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	7724.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-116423628-2	chr2	116423128	116424128	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-347532.0	NR_033447	69974.0	Mm.440293	NR_033447		2810405F15Rik	-	RIKEN cDNA 2810405F15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105804687-1	chr3	105804187	105805187	+	587.0	f1_balb.idr	Intergenic	MER3|DNA|hAT-Charlie	-3306.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	3.5	10.0	8.0	1.0	7.5	19.5
Merged-chr7-43344671-2	chr7	43344203	43345203	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6638.0	NM_001271019	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-118002281-2	chr5	118001781	118002781	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346588, intron 11 of 11)	intron (NM_001346588, intron 11 of 11)	-25462.0	NR_151582	57816.0	Mm.273285	NM_021344	ENSMUSG00000029359	Tesc	1010001A17Rik|2410011K10Rik|TE-1	tescalcin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66221917-2	chr14	66221417	66222417	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	B4|SINE|B4	-8093.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79018838-2	chr3	79018345	79019345	+	587.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	126042.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.5	14.0	3.5	7.0	1.0	2.0
Merged-chr15-78602261-1	chr15	78601761	78602761	+	587.0	f1_balb.idr	intron (NM_028195, intron 1 of 12)	intron (NM_028195, intron 1 of 12)	5214.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	2.5	4.0	8.0	8.0	7.5	9.0
Merged-chr11-67637901-1	chr11	67637401	67638401	+	587.0	f0_balb.idr	intron (NM_001277080, intron 3 of 12)	intron (NM_001277080, intron 3 of 12)	41346.0	NM_001277079	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	4.5	2.0	1.0	0.0	5.5	7.5
Merged-chr13-110431578-1	chr13	110431078	110432078	+	587.0	f0_balb.idr	Intergenic	Intergenic	36534.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0.5	1.5	8.0	2.5	2.0	4.0
Merged-chr7-106429266-1	chr7	106428766	106429766	+	587.0	f0_balb.idr	intron (NR_003967, intron 2 of 2)	L1_Mus3|LINE|L1	11807.0	NR_003967	209380.0	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.0	10.5	9.0	2.0	23.5	7.5
Merged-chr3-86999806-2	chr3	86999334	87000334	+	587.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007639)	promoter-TSS (NM_007639)	-494.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	39.0	52.0	29.5	10.0	64.0	36.5
Merged-chr19-46310139-1	chr19	46309639	46310639	+	587.0	f1_c57bl6.idr	intron (NM_019408, intron 15 of 21)	intron (NM_019408, intron 15 of 21)	4209.0	NM_001177370	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.0	0.0	1.0	0.0	2.5	0.5
Merged-chr5-134745823-2	chr5	134745323	134746323	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007925, intron 1 of 36)	intron (NM_007925, intron 1 of 36)	1500.0	NM_007925	13717.0	Mm.275320	NM_007925	ENSMUSG00000029675	Eln	AI385707|AI480567|E030024M20Rik	elastin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95833663-2	chr15	95833163	95834163	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253813, intron 2 of 20)	intron (NM_001253813, intron 2 of 20)	-3591.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17653544-2	chr10	17653044	17654044	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-69684.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	1.0	15.0	1.5	1.5	6.0	3.5
Merged-chr14-25664783-2	chr14	25664283	25665283	+	587.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001310666, exon 24 of 24)	3' UTR (NM_001310666, exon 24 of 24)	-29387.0	NM_134084	105675.0	Mm.41656	NM_134084	ENSMUSG00000021868	Ppif	AW457192|CyP-D|CyP-F|CypD|PPIase	peptidylprolyl isomerase F (cyclophilin F)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111302150-3	chr12	111301658	111302658	+	586.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183016, exon 28 of 37)	exon (NM_183016, exon 28 of 37)	31062.0	NM_033603	93835.0	Mm.197639	NM_033603	ENSMUSG00000021278	Amn	-	amnionless	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-53818932-3	chr9	53818439	53819439	+	586.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028060)	TTS (NM_028060)	-31312.0	NM_025540	66402.0	Mm.29132	NM_025540	ENSMUSG00000042045	Sln	2310045A07Rik	sarcolipin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-9435952-4	chr15	9435423	9436423	+	586.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029341)	promoter-TSS (NM_029341)	-105.0	NM_029341	75568.0	Mm.82143	NM_029341	ENSMUSG00000039676	Capsl	1700028N11Rik|AW125205	calcyphosine-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117964912-2	chr11	117964412	117965412	+	586.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4454.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75055667-2	chr14	75055167	75056167	+	586.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	39640.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126563386-2	chr8	126562886	126563886	+	586.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30050.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.5	6.5	0.0	3.0	0.0	7.5
Merged-chr16-36776221-2	chr16	36775724	36776724	+	586.75	f0_balb.idr|f1_balb.idr	intron (NM_001145899, intron 3 of 6)	intron (NM_001145899, intron 3 of 6)	8738.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24898012-2	chr17	24897558	24898558	+	586.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019730)	TTS (NM_019730)	1558.0	NM_019730	79059.0	Mm.430765	NM_019730	ENSMUSG00000073435	Nme3	1810009F08Rik|AI413736|DR-nm23|Ndk3|Nm23-DR|Nm23-M3	NME/NM23 nucleoside diphosphate kinase 3	protein-coding	0.0	3.5	4.0	1.5	4.0	0.0
Merged-chr9-116176496-2	chr9	116176002	116177002	+	586.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1139.0	NM_029575	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145196757-2	chr6	145196259	145197259	+	586.75	f0_balb.idr|f1_c57bl6.idr	intron (NM_177222, intron 6 of 15)	intron (NM_177222, intron 6 of 15)	14211.0	NM_177222	320662.0	Mm.207779	NM_177222	ENSMUSG00000043541	Casc1	A230084G12Rik|Las1	cancer susceptibility candidate 1	protein-coding	0.0	0.0	4.0	0.0	31.0	2.5
Merged-chr17-35738462-2	chr17	35737940	35738940	+	586.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-33841.0	NM_007584	12305.0	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	6.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-55803259-2	chr17	55802759	55803759	+	586.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_139138, intron 11 of 16)	Lx3_Mus|LINE|L1	53275.0	NM_139138	52614.0	Mm.210497	NM_139138	ENSMUSG00000032915	Adgre4	D17Ertd479e|Egf-tm7|Emr4|Fire|Gpr127	adhesion G protein-coupled receptor E4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142462181-2	chr5	142461681	142462681	+	586.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_199068)	TTS (NM_199068)	-1750.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49684572-2	chr13	49684072	49685072	+	586.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172015, intron 1 of 33)	intron (NM_172015, intron 1 of 33)	2442.0	NM_172015	105148.0	Mm.21118	NM_172015	ENSMUSG00000037851	Iars	2510016L12Rik|AI327140|AU044614|E430001P04Rik|ILRS	isoleucine-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166175268-2	chr2	166174768	166175768	+	586.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19585.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4356009-3	chr18	4355498	4356498	+	586.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040328, intron 2 of 3)	ORR1B1|LTR|ERVL-MaLR	2451.0	NR_040328	73915.0	Mm.482777	NR_040328		4833419F23Rik	-	RIKEN cDNA 4833419F23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46641649-2	chr17	46641149	46642149	+	586.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357130, intron 3 of 15)	B2_Mm1t|SINE|B2	4431.0	NM_001357130	74764.0	Mm.279599	NM_029091	ENSMUSG00000003546	Klc4	1200014P03Rik|AA408085|AW146303|Knsl8	kinesin light chain 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19806484-2	chr7	19805984	19806984	+	586.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9675.0	NM_023224	80794.0	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10970665-2	chr19	10970165	10971165	+	586.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_023529, intron 1 of 8)	intron (NM_023529, intron 1 of 8)	4005.0	NM_023529	69826.0	Mm.273404	NM_023529	ENSMUSG00000024731	Ms4a10	2010001N17Rik	membrane-spanning 4-domains, subfamily A, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36563156-2	chr18	36562656	36563656	+	586.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175375, intron 1 of 33)	B3|SINE|B2	2553.0	NM_175375	108857.0	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	0.0	8.0	1.5	6.0	4.0	1.0
Merged-chr15-97811454-2	chr15	97810954	97811954	+	586.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001204279, exon 2 of 24)	exon (NM_001204279, exon 2 of 24)	3409.0	NM_001204281	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79574782-2	chr3	79574282	79575282	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	6590.0	NR_152118	75879.0	Mm.410800	NR_152118		4930589L23Rik	-	RIKEN cDNA 4930589L23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124714805-2	chr6	124714305	124715305	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007531, intron 4 of 8)	intron (NM_007531, intron 4 of 8)	2516.0	NM_007531	12034.0	Mm.36241	NM_007531	ENSMUSG00000004264	Phb2	AU044498|BAP|Bap37|Bcap37|REA	prohibitin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-22344287-2	chr10	22343787	22344787	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-17607.0	NM_020030	56554.0	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141845510-1	chr4	141845010	141846010	+	586.5	f0_c57.idr	intron (NM_001033875, intron 1 of 8)	intron (NM_001033875, intron 1 of 8)	849.0	NM_001033875	76701.0	Mm.489680	NM_001033875	ENSMUSG00000062478	Ctrc	1810044E12Rik	chymotrypsin C (caldecrin)	protein-coding	0.0	0.0	4.5	0.0	4.0	9.0
Merged-chr11-118467941-2	chr11	118467441	118468441	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8891.0	NM_172573	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-87419268-2	chr12	87418768	87419768	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18489.0	NR_037228	100526546.0		NR_037228	ENSMUSG00000105428	Mir3068	mir-3068|mmu-mir-3068	microRNA 3068	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39389531-2	chr10	39389031	39390031	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122893, intron 1 of 13)	intron (NM_001122893, intron 1 of 13)	19732.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3363718-2	chr12	3363218	3364218	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1414.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130454562-1	chr5	130454062	130455062	+	586.5	f0_balb.idr	intron (NM_021371, intron 1 of 5)	intron (NM_021371, intron 1 of 5)	5770.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-70779138-2	chr6	70778638	70779638	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009075, intron 3 of 8)	Lx7|LINE|L1	13037.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92676700-2	chr5	92676200	92677200	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-1429.0	NM_001360019	320696.0	Mm.209991	NM_177230	ENSMUSG00000050050	Ccdc158	4932413O14Rik	coiled-coil domain containing 158	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-53613663-2	chr8	53613163	53614163	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146208, intron 2 of 9)	intron (NM_146208, intron 2 of 9)	25402.0	NM_146208	234258.0	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19905300-2	chr7	19904800	19905800	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027514, intron 7 of 7)	intron (NM_027514, intron 7 of 7)	15843.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-81302109-2	chr5	81301609	81302609	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198702, intron 3 of 27)	intron (NM_198702, intron 3 of 27)	280516.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	5.5	4.0	3.0	0.0	3.0	4.0
Merged-chr11-22989513-2	chr11	22989013	22990013	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-1080.0	NM_009837	12464.0	Mm.296985	NM_009837	ENSMUSG00000007739	Cct4	2610204B21Rik|A45|C78323|Cctd	chaperonin containing Tcp1, subunit 4 (delta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21290640-2	chr9	21290140	21291140	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009878, intron 1 of 1)	intron (NM_009878, intron 1 of 1)	569.0	NM_009878	12581.0	Mm.29020	NM_009878	ENSMUSG00000096472	Cdkn2d	INK4d|p19|p19INK4d	cyclin dependent kinase inhibitor 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27249221-2	chr7	27248721	27249721	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133770, intron 10 of 14)	MER44B|DNA|TcMar-Tigger	-9540.0	NM_010950	18223.0	Mm.458153	NM_010950	ENSMUSG00000063160	Numbl	nbl	numb-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117772588-2	chr11	117772088	117773088	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145439, intron 13 of 19)	intron (NM_145439, intron 13 of 19)	7060.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60726396-2	chr11	60725896	60726896	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022009, intron 1 of 29)	intron (NM_022009, intron 1 of 29)	867.0	NM_022009	14248.0	Mm.339755	NM_022009	ENSMUSG00000002812	Flii	3632430F08Rik|Fliih	flightless I actin binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138372640-2	chr1	138372140	138373140	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98902.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124093118-2	chr5	124092618	124093618	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019875, intron 1 of 11)	intron (NM_019875, intron 1 of 11)	2680.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122381748-2	chr2	122381248	122382248	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-12830.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-52670255-2	chr7	52669755	52670755	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-654539.0	NM_001195601	100503036.0	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59083582-2	chr15	59083082	59084082	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1556.0	NM_144800	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3356628-2	chr2	3356128	3357128	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145921, intron 3 of 7)	intron (NM_145921, intron 3 of 7)	9941.0	NM_145921	99035.0	Mm.13808	NM_145921	ENSMUSG00000026645	Olah	AI607300|E230009B14Rik|Thedc1	oleoyl-ACP hydrolase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6366887-2	chr19	6366387	6367387	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360393, intron 2 of 11)	intron (NM_001360393, intron 2 of 11)	3197.0	NR_122118	22668.0	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-8834580-2	chr16	8834080	8835080	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081400, intron 2 of 3)	intron (NM_001081400, intron 2 of 3)	4480.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-69529307-2	chr9	69528807	69529807	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	72363.0	NR_037296	100526560.0		NR_037296	ENSMUSG00000093042	Mir3109	mir-3109|mmu-mir-3109	microRNA 3109	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84268248-2	chr15	84267748	84268748	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	B4A|SINE|B4	36205.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96768076-2	chr11	96767576	96768576	+	586.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163389, exon 8 of 8)	3' UTR (NM_001163389, exon 8 of 8)	9479.0	NM_028965	74479.0	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	1.5	0.0	0.5	0.0	0.0	0.0
Merged-chr5-36511569-2	chr5	36511069	36512069	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 9 of 13)	intron (NM_133910, intron 9 of 13)	19054.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38478478-2	chr2	38477978	38478978	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33219.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114631967-2	chr5	114631467	114632467	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022017, intron 7 of 15)	PB1D9|SINE|Alu	26454.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0.0	0.0	0.0	0.0	2.5	0.0
Merged-chr1-86491880-2	chr1	86491380	86492380	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34677.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141631525-2	chr4	141631025	141632025	+	586.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033150, exon 10 of 20)	exon (NM_001033150, exon 10 of 20)	-7691.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	1.5	1.5	0.5	1.5	2.5	3.0
Merged-chr1-181255647-2	chr1	181255147	181256147	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43669.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7064066-2	chr19	7063566	7064566	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134147, intron 1 of 10)	B2_Mm2|SINE|B2	7298.0	NM_134147	107227.0	Mm.439977	NM_134147	ENSMUSG00000036278	Macrod1	AI604841|AW743046|D930010J01Rik|Lrp16	MACRO domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53261315-2	chr19	53260815	53261815	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6110.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100957381-2	chr11	100956881	100957881	+	586.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008986, exon 2 of 2)	3' UTR (NM_008986, exon 2 of 2)	13234.0	NM_001359105	19285.0	Mm.21864	NM_008986	ENSMUSG00000004044	Cavin1	2310075E07Rik|AW546441|Cav-p60|Cavin|Ptrf	caveolae associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135957631-2	chr4	135957131	135958131	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357530, intron 6 of 9)	B1_Mur4|SINE|Alu	-6094.0	NM_001356493	74246.0	Mm.247946	NM_178389	ENSMUSG00000028671	Gale	2310002A12Rik|AI323962	galactose-4-epimerase, UDP	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27450279-2	chr7	27449794	27450794	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144923, intron 1 of 4)	intron (NM_144923, intron 1 of 4)	-2124.0	NM_001290525	233016.0	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	1.0	26.0	16.5	5.0	21.0	17.0
Merged-chr7-19030323-2	chr7	19029823	19030823	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360713, intron 3 of 22)	RSINE1|SINE|B4	5946.0	NM_026605	68188.0	Mm.130902	NM_026605	ENSMUSG00000023118	Sympk	1500016F02Rik|4632415H16Rik|AA125406|AI449890|SPK|SYM	symplekin	protein-coding	6.0	0.0	1.0	1.5	4.5	1.5
Merged-chr8-117601045-2	chr8	117600545	117601545	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 21 of 32)	intron (NM_172285, intron 21 of 32)	70502.0	NM_028725	74032.0	Mm.296302	NM_028725	ENSMUSG00000034308	Sdr42e1	4632417N05Rik|AI117603	short chain dehydrogenase/reductase family 42E, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19638081-2	chr7	19637581	19638581	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019649, intron 7 of 13)	intron (NM_019649, intron 7 of 13)	-8643.0	NM_009046	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-40939760-2	chr13	40939260	40940260	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133219, intron 1 of 2)	intron (NM_133219, intron 1 of 2)	22126.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-130989535-2	chr1	130989035	130990035	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30310.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13655471-2	chr9	13654971	13655971	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013813, intron 1 of 3)	intron (NM_001013813, intron 1 of 3)	-6989.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134916872-2	chr4	134916372	134917372	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-1956.0	NM_027935	71817.0	Mm.88349	NM_027935	ENSMUSG00000028822	Tmem50a	3200001F09Rik|CAM|Smp1	transmembrane protein 50A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86594639-2	chr11	86594139	86595139	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 10 of 11)	B1_Mur2|SINE|Alu	-10481.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78529668-2	chr9	78529168	78530168	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-47944.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46281457-2	chr18	46280957	46281957	+	586.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172627)	promoter-TSS (NM_172627)	-607.0	NM_172627	225467.0	Mm.262096	NM_172627	ENSMUSG00000024477	Pggt1b	2010207C17Rik|2610100E13|AI451237|AI551093|BGG1|GGT1	protein geranylgeranyltransferase type I, beta subunit	protein-coding	51.5	94.0	57.0	35.5	84.0	34.5
Merged-chr3-138524104-2	chr3	138523604	138524604	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-2087.0	NM_007917	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	1.5	0.0	0.0	1.5	0.0	0.5
Merged-chr2-167683791-2	chr2	167683291	167684291	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER3|DNA|hAT-Charlie	-5124.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132233646-2	chr7	132233146	132234146	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78905.0	NM_018867	55987.0	Mm.471654	NM_018867	ENSMUSG00000030862	Cpxm2	4632435C11Rik|CPX-2|Cpx2	carboxypeptidase X 2 (M14 family)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91829786-2	chr16	91829286	91830286	+	586.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001110276, exon 16 of 16)	3' UTR (NM_001110276, exon 16 of 16)	100415.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-66919387-2	chr10	66918887	66919887	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_138560, intron 1 of 4)	RMER10A|LTR|ERVL	997.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11144931-2	chr16	11144431	11145431	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_027502, intron 19 of 22)	intron (NR_027502, intron 19 of 22)	-10399.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124035698-2	chr5	124035198	124036198	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3438.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0.0	0.0	1.5	0.5	1.5	0.0
Merged-chr10-127608008-2	chr10	127607508	127608508	+	586.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008512, exon 4 of 89)	exon (NM_008512, exon 4 of 89)	13140.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	21.5	45.0	20.0	20.5	34.0	27.0
Merged-chr16-95730017-2	chr16	95729517	95730517	+	586.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27610.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-124103208-3	chr1	124102708	124103708	+	586.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-57649.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	2.0	8.0	0.0	6.5	0.0	2.5
Merged-chr19-4046018-3	chr19	4045512	4046512	+	586.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3791.0	NM_181796	14869.0	Mm.441542	NM_181796	ENSMUSG00000038155	Gstp2	GSTpiA|Gst-3|Gst3	glutathione S-transferase, pi 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58479390-3	chr13	58478911	58479911	+	586.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76068.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-83131535-3	chr13	83131042	83132042	+	586.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-372492.0	NM_001347572	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81564051-2	chr10	81563551	81564551	+	586.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276288, intron 2 of 6)	intron (NM_001276288, intron 2 of 6)	4607.0	NM_001276288	14797.0	Mm.180013	NM_010347	ENSMUSG00000054452	Aes	AL024115|Esp1|Grg|Grg-5|Grg5|Tle5	amino-terminal enhancer of split	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8689405-3	chr4	8688897	8689897	+	586.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1009.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69696332-2	chr3	69695832	69696832	+	586.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	-25723.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85436118-2	chr12	85435618	85436618	+	586.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-37772.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120822675-2	chr11	120822175	120823175	+	586.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007988, intron 2 of 42)	intron (NM_007988, intron 2 of 42)	1872.0	NM_007988	14104.0	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-108567683-2	chr5	108567157	108568157	+	586.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17630.0	NM_007756	12889.0	Mm.5195	NM_007756	ENSMUSG00000033615	Cplx1	921-S	complexin 1	protein-coding	1.5	4.5	9.5	3.5	7.5	11.0
Merged-chr2-167987188-2	chr2	167986688	167987688	+	586.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080708, intron 13 of 21)	intron (NM_001080708, intron 13 of 21)	23405.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86477854-2	chr1	86477354	86478354	+	586.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48703.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77668780-2	chr18	77668280	77669280	+	586.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_178670, intron 2 of 4)	intron (NM_178670, intron 2 of 4)	45230.0	NM_178670	212163.0	Mm.23293	NM_178670	ENSMUSG00000047466	8030462N17Rik	Akd2|Ark2N	RIKEN cDNA 8030462N17 gene	protein-coding	0.0	10.5	0.5	0.5	1.0	1.0
Merged-chr3-52452865-2	chr3	52452344	52453344	+	586.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-64120.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34516980-2	chr5	34516480	34517480	+	586.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3001.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-16343151-2	chr2	16342651	16343651	+	586.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-13153.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136132169-2	chr4	136131669	136132669	+	586.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-11653.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172631879-2	chr1	172631379	172632379	+	586.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026725, intron 1 of 1)	intron (NM_026725, intron 1 of 1)	1095.0	NM_026725	68440.0	Mm.33024	NM_026725	ENSMUSG00000026544	Dusp23	1300005N15Rik|LDP-3	dual specificity phosphatase 23	protein-coding	1.0	1.5	1.5	0.0	0.0	1.0
Merged-chr17-23842374-2	chr17	23841874	23842874	+	586.083374	f1_balb.idr|f1_c57bl6.idr	exon (NM_027644, exon 5 of 7)	exon (NM_027644, exon 5 of 7)	1782.0	NM_027644	71003.0	Mm.328839	NM_027644	ENSMUSG00000024114	Prss41	4931440B09Rik|Tessp-1|Tessp1	protease, serine 41	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr19-53574233-2	chr19	53573733	53574733	+	586.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26163.0	NM_007790	13006.0	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83548732-2	chr17	83548232	83549232	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34399.0	NM_001159529	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99595823-2	chr10	99595323	99596323	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-13348.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104383307-2	chr8	104382807	104383807	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153582, intron 1 of 3)	intron (NM_153582, intron 1 of 3)	12500.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-100102401-2	chr6	100101901	100102901	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	184957.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127002196-1	chr10	127001696	127002696	+	586.0	f0_balb.idr	intron (NM_009635, intron 1 of 19)	intron (NM_009635, intron 1 of 19)	1487.0	NM_009635	11567.0	Mm.10739	NM_009635	ENSMUSG00000025432	Avil	Advil|DOC6	advillin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-35296843-1	chr15	35296343	35297343	+	586.0	f0_balb.idr	intron (NM_054049, intron 1 of 3)	CpG	731.0	NM_054049	107587.0	Mm.46336	NM_054049	ENSMUSG00000022330	Osr2	5430409I15Rik|Osr2A|Osr2B	odd-skipped related 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54690864-2	chr6	54690364	54691364	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289741, intron 2 of 4)	intron (NM_001289741, intron 2 of 4)	9240.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80741829-1	chr10	80741329	80742329	+	586.0	f0_c57.idr	intron (NM_007460, intron 1 of 30)	CpG	446.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173450047-2	chr1	173449534	173450534	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 2 of 8)	intron (NM_001013779, intron 2 of 8)	29430.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	6.5	16.0	1.5	2.0	6.0	10.0
Merged-chr3-108552306-2	chr3	108551806	108552806	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	2096.0	NR_028538	100217438.0		NR_028538		Scarna2	MBII-382	small Cajal body-specific RNA 2	ncRNA	1.0	1.0	0.0	1.0	1.0	0.0
Merged-chr1-172343941-2	chr1	172343441	172344441	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	2731.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	9.0	4.5	7.0	1.0	3.5	1.5
Merged-chr7-44823594-2	chr7	44823105	44824105	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171024, intron 1 of 8)	intron (NM_001171024, intron 1 of 8)	-6947.0	NR_033136	107503.0	Mm.389890	NM_030693	ENSMUSG00000038539	Atf5	AFTA|Atf7|Atfx|ODA-10	activating transcription factor 5	protein-coding	10.0	0.0	9.5	7.5	3.0	16.0
Merged-chr3-89454287-2	chr3	89453787	89454787	+	586.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310640)	promoter-TSS (NM_001310640)	-254.0	NM_001310640	68603.0	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-95744660-2	chr12	95744157	95745157	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	52431.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102607031-1	chr4	102606531	102607531	+	586.0	f0_balb.idr	3' UTR (NM_001177980, exon 10 of 10)	3' UTR (NM_001177980, exon 10 of 10)	17188.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149106333-1	chr4	149105833	149106833	+	586.0	f1_c57bl6.idr	intron (NM_001025296, intron 2 of 5)	intron (NM_001025296, intron 2 of 5)	2191.0	NM_001025296	13347.0	Mm.41433	NM_010044	ENSMUSG00000028974	Dffa	A330085O09Rik|DFF35|Dff45|ICAD|ICAD-L|ICAD-S	DNA fragmentation factor, alpha subunit	protein-coding	3.5	3.0	1.0	0.0	0.0	0.5
Merged-chr9-61232860-2	chr9	61232360	61233360	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60949.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114878877-2	chr11	114878377	114879377	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11164.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30633458-3	chr16	30632961	30633961	+	586.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	33738.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	1.0	8.0	1.5	12.5	0.0	6.5
Merged-chr19-3635123-1	chr19	3634623	3635623	+	586.0	f1_c57bl6.idr	intron (NM_008513, intron 5 of 22)	MLT1C|LTR|ERVL-MaLR	51441.0	NM_008513	16973.0	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	0.0	7.5	1.5	9.5	0.0	7.0
Merged-chr4-120731238-2	chr4	120730738	120731738	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081142, intron 1 of 13)	CpG	15938.0	NM_001081142	60613.0	Mm.249977	NM_001081142	ENSMUSG00000028631	Kcnq4	-	potassium voltage-gated channel, subfamily Q, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51609761-2	chr11	51609261	51610261	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-2880.0	NM_010448	15384.0	Mm.256875	NM_010448	ENSMUSG00000020358	Hnrnpab	3010025C11Rik|CBF-A|Cgbfa|Hnrpab	heterogeneous nuclear ribonucleoprotein A/B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37631904-1	chr13	37631404	37632404	+	586.0	f1_c57bl6.idr	Intergenic	LTR40a|LTR|ERVL	-194134.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	8.5	9.0	10.0	13.0	0.0	4.0
Merged-chr11-80199679-2	chr11	80199179	80200179	+	586.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028019)	TTS (NM_028019)	-9376.0	NM_001163354	59040.0	Mm.489674	NM_021536	ENSMUSG00000017686	Rhot1	2210403N23Rik|AA415293|AF244542|AI834919|Arht1|C430039G08Rik|Miro1	ras homolog family member T1	protein-coding	0.0	0.0	0.5	0.0	1.0	2.0
Merged-chr1-82290957-1	chr1	82290457	82291457	+	586.0	f0_balb.idr	5' UTR (NM_010570, exon 1 of 2)	5' UTR (NM_010570, exon 1 of 2)	482.0	NM_010570	16367.0	Mm.4952	NM_010570	ENSMUSG00000055980	Irs1	G972R|IRS-1	insulin receptor substrate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99185834-2	chr10	99185334	99186334	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	ORR1D1|LTR|ERVL-MaLR	-77397.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-144997335-1	chr4	144996835	144997835	+	586.0	f0_balb.idr	intron (NM_001276465, intron 67 of 69)	intron (NM_001276465, intron 67 of 69)	104198.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59233037-2	chr11	59232537	59233537	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4770.0	NM_007476	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	0.0	2.0	1.0	0.0	6.0	0.0
Merged-chr9-111052910-1	chr9	111052410	111053410	+	586.0	f0_balb.idr	Intergenic	Intergenic	4334.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112658802-1	chr13	112658302	112659302	+	586.0	f0_c57.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1964.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	1.0	7.5	12.5	0.0	1.5	4.5
Merged-chr15-27645856-2	chr15	27645356	27646356	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15163.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-36218624-2	chr13	36218124	36219124	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024274, intron 2 of 6)	intron (NM_024274, intron 2 of 6)	100981.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	0.0	0.0	0.0	1.0	4.0	6.5
Merged-chr18-38483396-2	chr18	38482896	38483896	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64489.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25605466-2	chr8	25604966	25605966	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001735, intron 1 of 9)	ID_B1|SINE|B4	3182.0	NM_001308482	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115805988-2	chr6	115805488	115806488	+	586.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025958)	TTS (NM_025958)	2115.0	NR_028546	100217451.0	Mm.484708	NR_028546	ENSMUSG00000064563	Snora7a	MBI-141	small nucleolar RNA, H/ACA box 7A	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6979228-1	chr19	6978728	6979728	+	586.0	f0_balb.idr	intron (NM_008020, intron 1 of 5)	intron (NM_008020, intron 1 of 5)	164.0	NM_001360288	14227.0	Mm.4234	NM_008020	ENSMUSG00000056629	Fkbp2	mFKBP13|mFKBP2	FK506 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25635331-2	chr14	25634831	25635831	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 6 of 23)	intron (NM_183208, intron 6 of 23)	31818.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-78183709-2	chr16	78183209	78184209	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER34A|LTR|ERV1	71745.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88769139-2	chr5	88768639	88769639	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007832, intron 1 of 6)	B1F|SINE|Alu	4126.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115608565-2	chr11	115608065	115609065	+	586.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025305)	TTS (NM_025305)	3938.0	NM_027162	69674.0	Mm.390387	NM_027162	ENSMUSG00000020743	Mif4gd	1110014L05Rik|2310075G12Rik	MIF4G domain containing	protein-coding	0.5	0.0	0.5	0.0	1.0	0.5
Merged-chr7-43798635-2	chr7	43798135	43799135	+	586.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008940, exon 2 of 5)	exon (NM_008940, exon 2 of 5)	1058.0	NM_008940	259277.0	Mm.458023	NM_008940	ENSMUSG00000064023	Klk8	BSP1|NP|Nrpn|Prss19	kallikrein related-peptidase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114983806-2	chr11	114983324	114984324	+	586.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145437, exon 4 of 4)	3' UTR (NM_145437, exon 4 of 4)	6062.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	5.5	9.5	20.0	30.0	70.0	41.5
Merged-chr7-97589645-1	chr7	97589145	97590145	+	586.0	f0_balb.idr	intron (NM_001081267, intron 1 of 15)	intron (NM_001081267, intron 1 of 15)	9749.0	NM_001081267	233532.0	Mm.43977	NM_001081267	ENSMUSG00000035623	Rsf1	4832420A03Rik|C030033M12Rik|Gm164|Hbxap|XAP8|p325	remodeling and spacing factor 1	protein-coding	14.0	4.5	1.0	7.5	3.0	2.5
Merged-chr17-31095905-1	chr17	31095405	31096405	+	586.0	f1_c57bl6.idr	intron (NM_009593, intron 4 of 14)	intron (NM_009593, intron 4 of 14)	33706.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	9.5	5.0	9.5	4.0	24.0	3.5
Merged-chr17-10838911-2	chr17	10838411	10839411	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 1 of 4)	intron (NM_027032, intron 1 of 4)	1280.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24718324-1	chr17	24717824	24718824	+	586.0	f1_c57bl6.idr	promoter-TSS (NM_026205)	promoter-TSS (NM_026205)	-267.0	NM_026205	67504.0	Mm.46159	NM_026205	ENSMUSG00000008482	Rnf151	1700010O16Rik|AV047371	ring finger protein 151	protein-coding	4.5	6.0	2.5	6.0	12.0	6.5
Merged-chr2-128431880-2	chr2	128431380	128432380	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-2529.0	NR_028590	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr3-95680898-2	chr3	95680398	95681398	+	586.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_144899, exon 11 of 18)	exon (NM_144899, exon 11 of 18)	7019.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24944513-1	chr2	24944013	24945013	+	586.0	f1_balb.idr	Intergenic	B3|SINE|B2	-5264.0	NM_026021	67187.0	Mm.296106	NM_026021	ENSMUSG00000026974	Zmynd19	2700064H14Rik|AA536891|AU014915|mizip	zinc finger, MYND domain containing 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90219662-2	chr7	90219162	90220162	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	45770.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	0.0	0.0	1.5	0.0	0.0	2.0
Merged-chr9-16291817-2	chr9	16291317	16292317	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 1 of 24)	B4|SINE|B4	86414.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24913655-2	chr16	24913155	24914155	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-145984.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44830906-2	chr7	44830406	44831406	+	586.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_053074, exon 2 of 2)	3' UTR (NM_053074, exon 2 of 2)	-5382.0	NM_010215	14204.0	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	1.0	2.0	1.5	0.0	5.0	1.0
Merged-chr16-18439682-2	chr16	18439182	18440182	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001353143, intron 5 of 16)	intron (NM_001353143, intron 5 of 16)	-12966.0	NM_001111062	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78042072-2	chr11	78041572	78042572	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001284228, intron 1 of 11)	Charlie4a|DNA|hAT-Charlie	1765.0	NM_001284228	14252.0	Mm.130227	NM_008028	ENSMUSG00000061981	Flot2	AI573412|Esa|reggie-2	flotillin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17544001-1	chr12	17543501	17544501	+	586.0	f1_c57bl6.idr	promoter-TSS (NM_013614)	promoter-TSS (NM_013614)	-872.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	8.5	8.5	5.0	0.0	8.0	4.5
Merged-chr1-91144985-1	chr1	91144485	91145485	+	586.0	f1_c57bl6.idr	promoter-TSS (NM_001033408)	promoter-TSS (NM_001033408)	-118.0	NM_001033408	329207.0	Mm.295940	NM_001033408	ENSMUSG00000070732	Rbm44	Gm817	RNA binding motif protein 44	protein-coding	14.0	5.5	1.5	7.5	3.5	0.0
Merged-chr17-24360104-2	chr17	24359599	24360599	+	586.0	f0_balb.idr|f1_balb.idr	intron (NM_013855, intron 2 of 32)	intron (NM_013855, intron 2 of 32)	8076.0	NM_001039581	27410.0	Mm.239470	NM_013855	ENSMUSG00000024130	Abca3	1810036E22Rik|ABC-C|Abc3	ATP-binding cassette, sub-family A (ABC1), member 3	protein-coding	9.0	8.0	20.0	4.5	24.0	13.5
Merged-chr7-92557888-1	chr7	92557388	92558388	+	586.0	f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-3261.0	NM_025515	66365.0	Mm.21173	NM_025515	ENSMUSG00000030613	Ccdc90b	2310015N07Rik|C86558	coiled-coil domain containing 90B	protein-coding	0.0	0.0	0.0	0.0	4.5	0.0
Merged-chr16-17232966-1	chr16	17232466	17233466	+	586.0	f0_balb.idr	promoter-TSS (NM_178922)	promoter-TSS (NM_178922)	-621.0	NM_178922	58180.0	Mm.261602	NM_178922	ENSMUSG00000050240	Hic2	AA409108|HRG22|mKIAA1020	hypermethylated in cancer 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50697798-1	chr9	50697298	50698298	+	586.0	f0_balb.idr	intron (NM_178118, intron 5 of 19)	intron (NM_178118, intron 5 of 19)	30186.0	NM_178118	330938.0	Mm.82598	NM_178118	ENSMUSG00000032064	Dixdc1	4930563F16Rik|BC048182|Ccd1|Ccd1Aalpha1L|Ccd1Abeta1L|Ccd1BalphaL|Ccd1BbetaL|Ccd1CL|mKIAA1735	DIX domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-19154480-2	chr5	19153980	19154980	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	72075.0	NR_102341	70832.0	Mm.398993	NR_102341	ENSMUSG00000097626	4921504A21Rik	-	RIKEN cDNA 4921504A21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115482084-2	chr8	115481584	115482584	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	224810.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21808274-2	chr14	21807774	21808774	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23287.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr10-123005416-2	chr10	123004916	123005916	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163024, intron 32 of 34)	intron (NM_001163024, intron 32 of 34)	-19692.0	NR_029527	387251.0		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133221596-1	chr4	133221096	133222096	+	586.0	f1_c57bl6.idr	exon (NM_027152, exon 2 of 6)	exon (NM_027152, exon 2 of 6)	787.0	NM_027152	69655.0	Mm.285685	NM_027152	ENSMUSG00000028865	Cd164l2	2310047N01Rik	CD164 sialomucin-like 2	protein-coding	0.0	0.0	0.5	2.0	0.0	0.0
Merged-chr8-70651346-1	chr8	70650846	70651846	+	586.0	f1_c57bl6.idr	exon (NM_023217, exon 4 of 5)	exon (NM_023217, exon 4 of 5)	8392.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	7.5	1.5	0.5	0.0	0.0	0.0
Merged-chr15-30505145-2	chr15	30504645	30505645	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	MLT2B3|LTR|ERVL	332552.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.0	0.0	0.0	2.5	1.5	0.0
Merged-chr4-63675330-2	chr4	63674830	63675830	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40909.0	NR_151544	102632940.0	Mm.399154	NR_151544	ENSMUSG00000086817	Gm11482	-	predicted gene 11482	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-47016662-1	chr7	47016162	47017162	+	586.0	f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-8248.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133927375-1	chr4	133926875	133927875	+	586.0	f1_balb.idr	Intergenic	Intergenic	-39578.0	NM_009097	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	4.0	6.0	7.5	0.0	7.0	2.5
Merged-chr14-54710309-1	chr14	54709809	54710809	+	586.0	f1_balb.idr	TTS (NM_207131)	TTS (NM_207131)	1865.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	0.0	5.0	0.0	5.5	0.0	0.5
Merged-chr17-7903512-2	chr17	7903012	7904012	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-22488.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-105018535-2	chr3	105018035	105019035	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 3 of 5)	RSINE1|SINE|B4	34418.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97470978-2	chr6	97470478	97471478	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-11692.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	18.5	30.0	2.5	13.5	11.5	3.5
Merged-chr11-94401347-1	chr11	94400847	94401847	+	586.0	f0_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	-8371.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0.0	4.0	0.5	0.0	0.0	1.5
Merged-chr11-84960016-2	chr11	84959516	84960516	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007607, intron 1 of 7)	intron (NM_007607, intron 1 of 7)	2262.0	NM_007607	12351.0	Mm.1641	NM_007607	ENSMUSG00000000805	Car4	AW456718|Ca4	carbonic anhydrase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16102033-2	chr7	16101468	16102468	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025898, intron 1 of 10)	intron (NM_025898, intron 1 of 10)	3388.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	4.0	17.5	4.0	4.0	9.5	3.5
Merged-chr6-42380843-2	chr6	42380343	42381343	+	586.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045169)	TTS (NR_045169)	-7575.0	NM_023580	13835.0	Mm.133330	NM_023580	ENSMUSG00000029859	Epha1	5730453L17Rik|AL033318|Eph|Esk	Eph receptor A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97696110-2	chr11	97695610	97696610	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163308, intron 1 of 9)	intron (NM_001163308, intron 1 of 9)	3274.0	NM_001163307	22658.0	Mm.2418	NM_009545	ENSMUSG00000018537	Pcgf2	Mel18|Rnf110|Zfp144|mel-18	polycomb group ring finger 2	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr14-54643697-1	chr14	54643197	54644197	+	586.0	f1_c57bl6.idr	promoter-TSS (NR_105913)	promoter-TSS (NR_105913)	-587.0	NR_105913	102466771.0		NR_105913	ENSMUSG00000106169	Mir6948	mmu-mir-6948	microRNA 6948	ncRNA	0.0	2.5	2.0	3.0	7.5	1.0
Merged-chr5-8841050-1	chr5	8840550	8841550	+	586.0	f0_balb.idr	intron (NM_011075, intron 21 of 27)	intron (NM_011075, intron 21 of 27)	-42527.0	NR_152132	330031.0	Mm.389059	NR_152132		Gm5106	A230021K14|EG330031	predicted gene 5106	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34884542-2	chr6	34884042	34885042	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013366, intron 13 of 14)	intron (NM_001013366, intron 13 of 14)	-6477.0	NM_001135611	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170520379-2	chr2	170519879	170520879	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-8452.0	NR_040367	100502946.0	Mm.421284	NR_040367	ENSMUSG00000085495	Gm16796	-	predicted gene, 16796	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-38267145-1	chr7	38266645	38267645	+	586.0	f0_c57.idr	intron (NM_025390, intron 3 of 6)	intron (NM_025390, intron 3 of 6)	4203.0	NM_025390	66161.0	Mm.22284	NM_025390	ENSMUSG00000030423	Pop4	1110023P21Rik|Rpp29	processing of precursor 4, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	9.5	1.5	0.5	0.5	0.0	1.5
Merged-chr9-44586789-1	chr9	44586289	44587289	+	586.0	f1_balb.idr	Intergenic	Lx8|LINE|L1	-18103.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0.0	1.5	0.0	5.0	2.0	0.0
Merged-chr2-165364047-1	chr2	165363547	165364547	+	586.0	f1_balb.idr	Intergenic	Intergenic	-1928.0	NM_001005425	381405.0	Mm.296323	NM_001005425	ENSMUSG00000056824	Zfp663	Gm1008	zinc finger protein 663	protein-coding	1.0	5.5	0.5	6.0	3.5	0.0
Merged-chr9-59679808-2	chr9	59679308	59680308	+	586.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011099)	TTS (NM_011099)	23440.0	NM_011099	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128130822-2	chr10	128130315	128131315	+	586.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019711, exon 13 of 13)	3' UTR (NM_019711, exon 13 of 13)	38032.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116211002-3	chr3	116210506	116211506	+	586.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42478.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-14901670-1	chr6	14901170	14902170	+	586.0	f0_balb.idr	5' UTR (NM_053242, exon 1 of 19)	5' UTR (NM_053242, exon 1 of 19)	321.0	NM_053242	114142.0	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122848758-1	chr5	122848258	122849258	+	586.0	f1_balb.idr	Intergenic	Intergenic	-1430.0	NM_030564	80751.0	Mm.388529	NM_030564	ENSMUSG00000029474	Rnf34	AW061037|AW536122|BC004042|C88279|RIFF	ring finger protein 34	protein-coding	0.0	4.5	4.0	0.0	1.5	6.0
Merged-chr7-135605577-2	chr7	135605077	135606077	+	586.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316679)	promoter-TSS (NM_001316679)	-251.0	NM_001316679	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32692043-2	chr2	32691543	32692543	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010236, intron 3 of 14)	B2_Mm2|SINE|B2	2132.0	NM_010236	14287.0	Mm.3830	NM_010236	ENSMUSG00000009566	Fpgs	AA408187	folylpolyglutamyl synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92430124-2	chr16	92429624	92430624	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-30046.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93162354-1	chr10	93161854	93162854	+	586.0	f1_c57bl6.idr	promoter-TSS (NR_035452)	promoter-TSS (NR_035452)	-431.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	38.0	127.5	85.5	39.5	118.0	126.0
Merged-chr9-17155131-2	chr9	17154631	17155631	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur1|LINE|L1	-776900.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5095759-2	chr6	5095259	5096259	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 6 of 15)	L2c|LINE|L2	98187.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98597517-3	chr11	98597021	98598021	+	586.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195544)	promoter-TSS (NM_001195544)	-770.0	NM_001195544	192852.0	Mm.342821	NM_001195544	ENSMUSG00000086545	Lrrc3c	Gm12	leucine rich repeat containing 3C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-116158629-2	chr3	116158129	116159129	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-28941.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	0.0	2.0	4.0	1.0	4.0	3.0
Merged-chr3-114323851-1	chr3	114323351	114324351	+	586.0	f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	293311.0	NM_007729	12814.0	Mm.209715	NM_007729	ENSMUSG00000027966	Col11a1	C530001D20Rik|cho	collagen, type XI, alpha 1	protein-coding	0.0	1.0	2.0	5.0	0.0	7.0
Merged-chr10-26751915-2	chr10	26751415	26752415	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-20597.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27358659-1	chr2	27358159	27359159	+	586.0	f0_balb.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	68949.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	4.5	5.5	7.5	3.5	5.5	7.5
Merged-chr13-22052074-2	chr13	22051553	22052553	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8823.0	NM_178198	319183.0	Mm.371766	NM_178198	ENSMUSG00000069300	Hist1h2bj	-	histone cluster 1, H2bj	protein-coding	0.5	2.5	0.5	0.0	1.0	1.5
Merged-chr17-42885469-1	chr17	42884969	42885969	+	586.0	f1_c57bl6.idr	Intergenic	Intergenic	-9045.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	4.5	19.5	17.5	10.0	12.0	2.5
Merged-chr10-8739042-1	chr10	8738542	8739542	+	586.0	f1_c57bl6.idr	intron (NM_175155, intron 16 of 19)	intron (NM_175155, intron 16 of 19)	147028.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.0	2.0	1.5	2.0	3.5	3.0
Merged-chr6-93981432-2	chr6	93980932	93981932	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029850, intron 1 of 23)	intron (NM_001029850, intron 1 of 23)	-67742.0	NM_001083320	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90109711-2	chr3	90109211	90110211	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029937, intron 2 of 39)	intron (NM_029937, intron 2 of 39)	5579.0	NM_029937	77595.0	Mm.159949	NM_029937	ENSMUSG00000027939	Nup210l	4930548O11Rik|R26-EGFP|Tg(Gt(ROSA)26Sor-EGFP)130910Eps	nucleoporin 210-like	protein-coding	0.0	1.5	2.0	6.0	0.0	1.0
Merged-chr15-72716674-1	chr15	72716174	72717174	+	586.0	f0_balb.idr	intron (NM_029640, intron 18 of 21)	intron (NM_029640, intron 18 of 21)	93650.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	2.5	0.0	0.5	2.5	0.0	0.5
Merged-chr4-156181416-2	chr4	156180916	156181916	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021604, intron 3 of 35)	intron (NM_021604, intron 3 of 35)	16072.0	NM_021604	11603.0	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-28166589-2	chr4	28166089	28167089	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2-int|LTR|ERVL-MaLR	-646542.0	NM_001290434	13841.0	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3667492-2	chr7	3666992	3667992	+	586.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_181820, exon 11 of 15)	exon (NM_181820, exon 11 of 15)	-1652.0	NM_027203	69757.0	Mm.389782	NM_027203	ENSMUSG00000078813	Leng1	1500001K17Rik	leukocyte receptor cluster (LRC) member 1	protein-coding	0.0	2.5	0.0	3.0	2.5	4.0
Merged-chr2-104146133-2	chr2	104145633	104146633	+	586.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033347, exon 21 of 21)	3' UTR (NM_001033347, exon 21 of 21)	23364.0	NM_026634	68243.0	Mm.158191	NM_026634	ENSMUSG00000032671	A930018P22Rik	-	RIKEN cDNA A930018P22 gene	protein-coding	0.0	1.5	6.5	0.0	1.0	5.5
Merged-chr16-30942642-2	chr16	30942142	30943142	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	138790.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-22803998-2	chr2	22803498	22804498	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	PB1D10|SINE|Alu	29671.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-4319067-2	chr9	4318567	4319567	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164574, intron 2 of 2)	intron (NM_001164574, intron 2 of 2)	9251.0	NM_026962	69149.0	Mm.25946	NM_026962	ENSMUSG00000025893	Kbtbd3	2200003A07Rik|Bklhd3	kelch repeat and BTB (POZ) domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10310774-2	chr17	10310274	10311274	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021881, intron 1 of 6)	intron (NM_021881, intron 1 of 6)	8587.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.0	3.0	2.0	5.5	0.0	0.0
Merged-chr10-58418508-2	chr10	58418008	58419008	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359116, intron 9 of 9)	intron (NM_001359116, intron 9 of 9)	24135.0	NM_001346676	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70371063-1	chr14	70370563	70371563	+	586.0	f0_balb.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-19639.0	NM_001135151	213053.0	Mm.270647	NM_144808	ENSMUSG00000022094	Slc39a14	FAD-123|ZIP-14|Zip14|fad123	solute carrier family 39 (zinc transporter), member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-45926232-1	chr1	45925732	45926732	+	586.0	f0_balb.idr	promoter-TSS (NM_016917)	promoter-TSS (NM_016917)	-638.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166607101-2	chr2	166606601	166607601	+	585.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 10 of 39)	L2b|LINE|L2	42579.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64445345-2	chr1	64444845	64445845	+	585.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87459.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19179393-2	chr10	19178894	19179894	+	585.833313	f1_balb.idr|f1_c57bl6.idr	intron (NR_038022, intron 1 of 1)	intron (NR_038022, intron 1 of 1)	12156.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.0	1.0	0.0	2.0	3.5	0.0
Merged-chr10-7206700-2	chr10	7206230	7207230	+	585.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172546, intron 1 of 12)	intron (NM_172546, intron 1 of 12)	5507.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	12.0	6.0	4.0	0.0	3.0	2.5
Merged-chr17-71246198-2	chr17	71245678	71246678	+	585.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357791, intron 18 of 19)	intron (NM_001357791, intron 18 of 19)	41524.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.0	3.0	1.5	0.0	0.0	2.5
Merged-chr10-80290095-2	chr10	80289595	80290595	+	585.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	AT_rich|Low_complexity|Low_complexity	-2336.0	NM_009091	20054.0	Mm.643	NM_009091	ENSMUSG00000063457	Rps15	rig	ribosomal protein S15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-146173629-2	chr4	146173129	146174129	+	585.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177545, intron 2 of 4)	RMER17B2|LTR|ERVK	15939.0	NM_001177545	667666.0	Mm.459230	NM_001177545	ENSMUSG00000066007	Zfp600	Gm13164	zinc finger protein 600	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28314389-2	chr17	28313889	28314889	+	585.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_028296, intron 1 of 7)	PB1D9|SINE|Alu	859.0	NM_001163820	72775.0	Mm.201859	NM_028348	ENSMUSG00000007570	Fance	2810451D06Rik|AI415634|AW209126	Fanconi anemia, complementation group E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166553130-2	chr2	166552630	166553630	+	585.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11392.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4935455-2	chr16	4934955	4935955	+	585.666626	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037666, exon 3 of 3)	non-coding (NR_037666, exon 3 of 3)	-3656.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25262642-2	chr15	25262205	25263205	+	585.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	151059.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29096554-2	chr17	29096054	29097054	+	585.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007669, intron 1 of 2)	intron (NM_007669, intron 1 of 2)	2785.0	NM_007669	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr4-152295586-2	chr4	152295086	152296086	+	585.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1628.0	NR_037908	57295.0	Mm.277464	NM_133788	ENSMUSG00000039662	Icmt	1700008E11Rik|C80758|Gm13095|HSTE14|PPMT|STE14|pcCMT	isoprenylcysteine carboxyl methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118142546-2	chr10	118142046	118143046	+	585.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162904, intron 1 of 14)	intron (NM_001162904, intron 1 of 14)	759.0	NM_010785	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	3.0	3.5	10.5	2.5	3.0	2.0
Merged-chr10-77865026-2	chr10	77864526	77865526	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001287074, intron 3 of 11)	intron (NM_001287074, intron 3 of 11)	3051.0	NM_001101631	100041351.0	Mm.441672	NM_001101631	ENSMUSG00000111915	Gm3285	-	predicted gene 3285	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35905594-2	chr16	35905094	35906094	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MRLTR33|LTR|ERVK	-32876.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	0.0	11.0	14.0	10.5	17.0	6.0
Merged-chr6-141145458-2	chr6	141144958	141145958	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-103811.0	NM_018779	54611.0	Mm.103728	NM_018779	ENSMUSG00000041741	Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132004474-2	chr2	132003974	132004974	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175445, intron 5 of 10)	intron (NM_175445, intron 5 of 10)	25514.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102220047-2	chr11	102219547	102220547	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001284248, intron 3 of 28)	intron (NM_001284248, intron 3 of 28)	10103.0	NR_106179	102465892.0		NR_106179	ENSMUSG00000098863	Mir8101	Gm27705|mmu-mir-8101	microRNA 8101	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125279640-2	chr5	125279140	125280140	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205082, intron 11 of 11)	intron (NM_001205082, intron 11 of 11)	61454.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-37186995-2	chr11	37186495	37187495	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-242754.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	1.5	0.5
Merged-chr15-83098983-2	chr15	83098483	83099483	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1222.0	NM_023475	68607.0	Mm.30056	NM_023475	ENSMUSG00000058586	Serhl	0610008B10Rik|1110019M09Rik|AU019786	serine hydrolase-like	protein-coding	0.0	0.0	0.5	7.0	0.0	1.0
Merged-chr1-37560600-2	chr1	37560100	37561100	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19584.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	0.0	4.0	2.0	0.0	4.0	2.0
Merged-chr2-34906249-2	chr2	34905749	34906749	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028716, intron 5 of 14)	intron (NM_028716, intron 5 of 14)	7727.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26099440-2	chr17	26098926	26099926	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3956.0	NM_019731	56520.0	Mm.41787	NM_019731	ENSMUSG00000024177	Nme4	2610027N22Rik|2810024O08Rik|5730493H09Rik|NM23-M4|Nm23M4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding	4.5	0.0	2.5	0.0	0.0	3.5
Merged-chr13-54818649-2	chr13	54818149	54819149	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29244.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	0.0	0.0	0.5	2.5	0.0	6.0
Merged-chr6-28425296-2	chr6	28424796	28425796	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007480, intron 4 of 5)	intron (NM_007480, intron 4 of 5)	1692.0	NM_007480	11844.0	Mm.389075	NM_007480	ENSMUSG00000020440	Arf5	-	ADP-ribosylation factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46850005-2	chr8	46849505	46850505	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110260.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-53825689-2	chr1	53825189	53826189	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 28 of 28)	MTD|LTR|ERVL-MaLR	-23735.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	16.5	36.0	35.0	30.5	19.0	19.5
Merged-chr3-84259421-2	chr3	84258921	84259921	+	585.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001271727, exon 1 of 12)	5' UTR (NM_001271727, exon 1 of 12)	358.0	NM_001271727	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-142254181-2	chr2	142253681	142254681	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 11 of 18)	intron (NM_001013802, intron 11 of 18)	647283.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150465984-2	chr4	150465471	150466471	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 4 of 22)	intron (NM_001085492, intron 4 of 22)	184055.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	1.0	0.5	0.0	1.0	0.0	0.0
Merged-chr2-129588601-2	chr2	129588097	129589097	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4242.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	4.5	0.0	4.0	9.5	0.5	13.0
Merged-chr8-12784607-2	chr8	12784107	12785107	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015804, intron 1 of 28)	intron (NM_015804, intron 1 of 28)	27591.0	NM_001293667	50770.0	Mm.257837	NM_015804	ENSMUSG00000031441	Atp11a	4930558F19Rik|AU040868|Atpc1h|Ih	ATPase, class VI, type 11A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118534875-2	chr7	118534375	118535375	+	585.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172476)	TTS (NM_172476)	-1519.0	NM_009940	12850.0	Mm.20634	NM_009940	ENSMUSG00000030652	Coq7	clk-1	demethyl-Q 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56138213-2	chr17	56137713	56138713	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130456, intron 1 of 16)	intron (NM_001130456, intron 1 of 16)	2130.0	NM_001130456	20359.0	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33047625-2	chr2	33047125	33048125	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355201, intron 6 of 29)	intron (NM_001355201, intron 6 of 29)	38832.0	NM_001355202	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-53088116-2	chr8	53087616	53088616	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-423586.0	NM_001205054	11593.0	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36470198-2	chr16	36469698	36470698	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-14806.0	NM_025288	20863.0	Mm.136573	NM_025288	ENSMUSG00000054905	Stfa3	Stf3	stefin A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30172979-2	chr2	30172479	30173479	+	585.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172660)	TTS (NM_172660)	1455.0	NM_007931	13804.0	Mm.474473	NM_007931	ENSMUSG00000015337	Endog	-	endonuclease G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19180485-2	chr7	19179985	19180985	+	585.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162996)	promoter-TSS (NM_001162996)	-685.0	NM_001162996	72205.0	Mm.154121	NM_028153	ENSMUSG00000040811	Eml2	1600029N02Rik|EMAP-2	echinoderm microtubule associated protein like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-35992338-2	chr1	35991838	35992838	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76062.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-153806823-2	chr3	153806323	153807323	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-14736.0	NR_045801	70594.0	Mm.491050	NR_045801	ENSMUSG00000062046	5730460C07Rik	-	RIKEN cDNA 5730460C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85399304-2	chr12	85398804	85399804	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24587.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3854199-2	chr12	3853699	3854699	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 3 of 22)	B2_Mm2|SINE|B2	8045.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20458882-2	chr11	20458382	20459382	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84371.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr7-130673583-2	chr7	130673083	130674083	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_206856, intron 3 of 20)	intron (NM_206856, intron 3 of 20)	-18973.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113489677-2	chr13	113489177	113490177	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 1 of 6)	URR1B|DNA|hAT-Charlie	13167.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-32196347-2	chr17	32195847	32196847	+	585.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_020508)	TTS (NM_020508)	-6877.0	NM_001347341	71932.0	Mm.176240	NM_001033163	ENSMUSG00000037577	Ephx3	2310063B19Rik|Abhd9|EH3	epoxide hydrolase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-183779812-2	chr1	183779312	183780312	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151520, intron 1 of 2)	MIRb|SINE|MIR	30835.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-5260807-2	chr10	5260307	5261307	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347711, intron 62 of 145)	GA-rich|Low_complexity|Low_complexity	-66100.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.0	0.0	0.0	0.0	4.0	0.5
Merged-chr3-127277927-2	chr3	127277427	127278427	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	Lx8|LINE|L1	116622.0	NR_105029	100862268.0	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA	5.0	1.5	2.0	3.0	2.5	3.0
Merged-chr2-142989197-2	chr2	142988697	142989697	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73872.0	NM_021335	20639.0	Mm.1323	NM_021335	ENSMUSG00000008333	Snrpb2	2810052G09Rik	U2 small nuclear ribonucleoprotein B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5786376-2	chr11	5785876	5786876	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2107.0	NM_001146309	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87528911-1	chr3	87528411	87529411	+	585.5	f0_balb.idr	intron (NM_001359750, intron 3 of 4)	intron (NM_001359750, intron 3 of 4)	3333.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	2.0	4.0	4.0	4.0	37.5	4.0
Merged-chr2-167378895-2	chr2	167378383	167379383	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-29705.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-116933417-2	chr2	116932917	116933917	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	33265.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122914097-2	chr8	122913597	122914597	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 3 of 12)	intron (NM_001081379, intron 3 of 12)	65723.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	7.5	5.0	2.5	2.5	0.0	1.0
Merged-chr1-23917036-1	chr1	23916536	23917536	+	585.5	f0_c57.idr	intron (NM_001357395, intron 1 of 10)	RMER4B|LTR|ERVK	5345.0	NM_001357395	98366.0	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	17.0	25.0	7.0	7.5	1.5	11.0
Merged-chr18-56710771-2	chr18	56710271	56711271	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010721, intron 1 of 10)	B1_Mus1|SINE|Alu	2958.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-53846160-2	chr1	53845660	53846660	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 21 of 28)	intron (NM_001001883, intron 21 of 28)	-3264.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	6.0	17.5	13.0	9.0	11.0	6.5
Merged-chr3-61400760-2	chr3	61400260	61401260	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36253.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-167334468-2	chr1	167333968	167334968	+	585.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001039483)	TTS (NM_001039483)	-15523.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-105954037-1	chr7	105953537	105954537	+	585.5	f0_c57.idr	promoter-TSS (NM_029000)	promoter-TSS (NM_029000)	-67.0	NM_029000	74558.0	Mm.458429	NM_029000	ENSMUSG00000045868	Gvin1	9130002C22Rik|9830104F22Rik|Iigs1|VLIG|VLIG-1	GTPase, very large interferon inducible 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-131555863-2	chr3	131555363	131556363	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-8905.0	NM_001289479	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17693309-2	chr16	17692809	17693809	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358404, intron 2 of 16)	intron (NM_001358404, intron 2 of 16)	29591.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120035951-2	chr1	120035451	120036451	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001012322, intron 4 of 13)	(CA)n|Simple_repeat|Simple_repeat	28971.0	NM_001012322	319229.0	Mm.189223	NM_001012322	ENSMUSG00000026387	Sctr	6530402O03Rik	secretin receptor	protein-coding	0.0	1.0	1.0	2.5	0.5	0.0
Merged-chr14-40929366-1	chr14	40928866	40929866	+	585.5	f0_balb.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	18843.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105854013-2	chr8	105853515	105854515	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1088.0	NM_021513	59016.0	Mm.286598	NM_021513	ENSMUSG00000036442	Thap11	2810036E22Rik|AB041579|CTG-B43a|CTG-B45d|Ronin	THAP domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25575182-2	chr8	25574682	25575682	+	585.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010206, exon 18 of 18)	3' UTR (NM_010206, exon 18 of 18)	-19099.0	NR_110510	102633315.0	Mm.437828	NR_110510	ENSMUSG00000086134	Gm16159	-	predicted gene 16159	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92396210-2	chr16	92395710	92396710	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019466, intron 2 of 3)	intron (NM_019466, intron 2 of 3)	3868.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-68384027-2	chr15	68383527	68384527	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-42738.0	NR_029718	387228.0		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-35236708-2	chr5	35236208	35237208	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41858.0	NM_007418	11553.0	Mm.57205	NM_007418	ENSMUSG00000045318	Adra2c	Adra-2c|[a]2C|alpha2-C4|alpha2C	adrenergic receptor, alpha 2c	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117874055-2	chr5	117873555	117874555	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 1 of 27)	intron (NM_008712, intron 1 of 27)	7216.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-36235470-2	chr2	36234970	36235970	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 2 of 10)	intron (NM_008969, intron 2 of 10)	5044.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19801822-2	chr7	19801322	19802322	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-5013.0	NM_023224	80794.0	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53364062-2	chr18	53363562	53364562	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 3 of 6)	intron (NM_029394, intron 3 of 6)	53945.0	NM_008908	19038.0	Mm.4587	NM_008908	ENSMUSG00000024538	Ppic	CyP-20c	peptidylprolyl isomerase C	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr12-59078197-2	chr12	59077697	59078697	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11278.0	NM_008891	18949.0	Mm.22347	NM_008891	ENSMUSG00000020994	Pnn	AU045199|D12Ertd512e	pinin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-86886859-2	chr8	86886356	86887356	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4A|LTR|ERVK	-1598.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0.0	7.0	0.5	0.0	4.5	0.0
Merged-chr6-48698201-2	chr6	48697701	48698701	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	10043.0	NM_153175	231931.0	Mm.321047	NM_153175	ENSMUSG00000047867	Gimap6	4833419H03Rik|Ian6|mFLJ00102	GTPase, IMAP family member 6	protein-coding	7.5	0.0	0.5	0.0	2.0	1.5
Merged-chr4-55860159-2	chr4	55859659	55860659	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-327684.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5255058-3	chr6	5254573	5255573	+	585.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173006, intron 1 of 8)	intron (NM_173006, intron 1 of 8)	1160.0	NM_173006	269823.0	Mm.9122	NM_173006	ENSMUSG00000029759	Pon3	2810004E20|AI786302	paraoxonase 3	protein-coding	0.0	1.0	4.0	3.5	9.5	4.5
Merged-chr17-10606329-3	chr17	10605828	10606828	+	585.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	150112.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-114789804-3	chr9	114789331	114790331	+	585.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027294, intron 3 of 3)	intron (NM_027294, intron 3 of 3)	-7838.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	10.5	17.0	21.0	6.0	9.0	9.5
Merged-chr7-6149243-2	chr7	6148743	6149743	+	585.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013012, intron 1 of 2)	intron (NM_001013012, intron 1 of 2)	6728.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92218037-2	chr1	92217537	92218537	+	585.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TAAA)n|Simple_repeat|Simple_repeat	-37696.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	13.0	6.0	1.0	5.5	5.5	1.5
Merged-chr12-24706918-2	chr12	24706437	24707437	+	585.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1317.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	0.0	6.0	2.0	5.0	1.5	3.0
Merged-chr4-11033071-2	chr4	11032571	11033571	+	585.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25452.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56022373-5	chr17	56021861	56022861	+	585.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013664, intron 1 of 9)	intron (NM_013664, intron 1 of 9)	13160.0	NM_026530	68047.0	Mm.358710	NM_026530	ENSMUSG00000003199	Mpnd	E130307M08Rik	MPN domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85311069-1	chr1	85310569	85311569	+	585.0	f1_balb.idr	Intergenic	B3|SINE|B2	-40503.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63071805-2	chr14	63071305	63072305	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16732.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr17-25164592-1	chr17	25164092	25165092	+	585.0	f1_balb.idr	exon (NM_001079929, exon 6 of 17)	exon (NM_001079929, exon 6 of 17)	2131.0	NM_001079929	207209.0	Mm.207121	NM_001079929	ENSMUSG00000059562	Ccdc154	Ccdc157|Gm317	coiled-coil domain containing 154	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr8-80329688-2	chr8	80329188	80330188	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-164357.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163600167-2	chr2	163599667	163600667	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2147.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-59196900-2	chr6	59196400	59197400	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11970.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-63319061-2	chr16	63318561	63319561	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	464754.0	NM_011173	19128.0	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53409718-3	chr4	53409204	53410204	+	585.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30709.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124862577-2	chr6	124862077	124863077	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013533, intron 1 of 4)	intron (NM_013533, intron 1 of 4)	1406.0	NM_013533	14788.0	Mm.2514	NM_013533	ENSMUSG00000038390	Gpr162	A-2|BC031437|Grca	G protein-coupled receptor 162	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126750924-2	chr7	126750424	126751424	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-8702.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11917939-2	chr19	11917438	11918438	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172635, intron 2 of 18)	B4A|SINE|B4	5539.0	NM_172635	225929.0	Mm.42711	NM_172635	ENSMUSG00000046139	Patl1	AV312086|Pat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding	11.5	52.5	50.0	25.0	73.0	42.0
Merged-chr5-12845413-2	chr5	12844913	12845913	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	462247.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66990110-2	chr9	66989610	66990610	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14626.0	NM_030717	80907.0	Mm.157882	NM_030717	ENSMUSG00000032370	Lactb	LACT-1|Lact1|Mrpl56	lactamase, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154736342-1	chr2	154735842	154736842	+	585.0	f1_balb.idr	Intergenic	LTR16C|LTR|ERVL	-54768.0	NM_001139512	19383.0	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	9.5	1.5	3.0	7.5	0.5	3.5
Merged-chr11-76452156-2	chr11	76451656	76452656	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 14 of 21)	intron (NM_001346670, intron 14 of 21)	16309.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34996085-2	chr17	34995585	34996585	+	585.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_033075)	TTS (NM_033075)	4661.0	NM_033075	110956.0	Mm.22506	NM_033075		D17H6S56E-5	G7e	DNA segment, Chr 17, human D6S56E 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-31920826-2	chr18	31920326	31921326	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-8923.0	NM_026006	67158.0	Mm.31537	NM_026006	ENSMUSG00000044982	Sft2d3	2610206C24Rik|AI847965|AW046173	SFT2 domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125311571-2	chr8	125311071	125312071	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	181262.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	3.0	0.5	3.0	3.0	0.5	3.0
Merged-chr4-10972808-1	chr4	10972308	10973308	+	585.0	f0_balb.idr	Intergenic	Intergenic	34811.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	0.5	1.5	0.5	0.5	2.5	2.5
Merged-chr13-5715631-2	chr13	5715131	5716131	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	142461.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45401920-1	chr13	45401420	45402420	+	585.0	f0_balb.idr	intron (NM_153789, intron 2 of 6)	PB1D9|SINE|Alu	12178.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5763008-2	chr11	5762508	5763508	+	585.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361588)	promoter-TSS (NM_001361588)	-632.0	NM_001361589	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	19.0	23.5	31.5	21.0	31.0	47.5
Merged-chr11-65701097-1	chr11	65700597	65701597	+	585.0	f0_balb.idr	intron (NM_001316368, intron 7 of 10)	RMER16_Mm|LTR|ERVK	33735.0	NR_030417	791070.0		NR_030417	ENSMUSG00000076460	Mir744	Mirn744|mir-744|mmu-mir-744	microRNA 744	ncRNA	0.0	3.0	1.0	1.5	0.0	0.0
Merged-chr9-77608229-2	chr9	77607729	77608729	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28503.0	NM_172925	244923.0	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38188393-2	chr18	38187893	38188893	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21369.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr12-40447804-1	chr12	40447304	40448304	+	585.0	f0_balb.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	1751.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62969263-2	chr9	62968763	62969763	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 1 of 13)	intron (NM_019663, intron 1 of 13)	11616.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6609884-2	chr17	6609384	6610384	+	585.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_028305)	TTS (NR_028305)	8105.0	NM_001166630	100040563.0	Mm.457381	NM_001166630	ENSMUSG00000000579	Dynlt1c	100040603|Dynlt1d	dynein light chain Tctex-type 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25053885-2	chr2	25053385	25054385	+	585.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020276)	promoter-TSS (NM_020276)	-494.0	NM_001177654	56876.0	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92294305-1	chr5	92293805	92294805	+	585.0	f1_balb.idr	intron (NM_172713, intron 12 of 21)	L2a|LINE|L2	15719.0	NM_172713	231452.0	Mm.86564	NM_172713	ENSMUSG00000029415	Sdad1	4931421J16|AA591032|AW538460	SDA1 domain containing 1	protein-coding	8.5	3.5	4.0	5.5	0.0	3.5
Merged-chr4-139639872-1	chr4	139639372	139640372	+	585.0	f1_c57bl6.idr	intron (NM_175438, intron 8 of 14)	intron (NM_175438, intron 8 of 14)	-4170.0	NR_105987	102465617.0		NR_105987	ENSMUSG00000098569	Mir7020	Gm27759|mmu-mir-7020	microRNA 7020	ncRNA	0.0	0.0	0.0	0.0	3.5	0.0
Merged-chr2-135166198-2	chr2	135165698	135166698	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145830, intron 3 of 31)	ORR1D1|LTR|ERVL-MaLR	49418.0	NR_040517	78805.0	Mm.78702	NR_040517	ENSMUSG00000085247	4930545L23Rik	-	RIKEN cDNA 4930545L23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-140673823-1	chr4	140673323	140674323	+	585.0	f1_c57bl6.idr	Intergenic	Intergenic	-7918.0	NM_001112722	72754.0	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	6.0	2.5	4.5	4.0	1.0	0.5
Merged-chr7-138844585-2	chr7	138844085	138845085	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045483, intron 1 of 1)	intron (NM_001045483, intron 1 of 1)	1682.0	NM_001045483	69546.0	Mm.31598	NM_027115	ENSMUSG00000041775	Mapk1ip1	2310009E07Rik|AU043776|MISS	mitogen-activated protein kinase 1 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-38928102-2	chr19	38927602	38928602	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2888.0	NM_008234	15201.0	Mm.57223	NM_008234	ENSMUSG00000025001	Hells	AI323785|E130115I21Rik|LSH|Lysh|PASG|YFK8	helicase, lymphoid specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141482604-2	chr7	141482104	141483104	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252588, intron 2 of 7)	intron (NM_001252588, intron 2 of 7)	6224.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54960208-2	chr12	54959708	54960708	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013815, intron 3 of 26)	intron (NM_013815, intron 3 of 26)	26128.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	19.5	20.5	9.0	0.0	18.0	7.0
Merged-chr1-151716013-2	chr1	151715513	151716513	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 13 of 13)	intron (NM_022018, intron 13 of 13)	38714.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66186632-2	chr9	66186132	66187132	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010019, intron 2 of 11)	intron (NM_010019, intron 2 of 11)	28406.0	NM_010019	13143.0	Mm.304472	NM_010019	ENSMUSG00000032380	Dapk2	-	death-associated protein kinase 2	protein-coding	0.0	4.0	0.5	0.0	3.0	0.5
Merged-chr17-17626106-2	chr17	17625606	17626606	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1617.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44416856-2	chr9	44416356	44417356	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151776, intron 3 of 10)	B2_Mm1a|SINE|B2	1213.0	NR_151776	382073.0	Mm.259573	NM_201372	ENSMUSG00000043923	Ccdc84	D630044F24Rik|Gm1114	coiled-coil domain containing 84	protein-coding	9.0	4.5	3.0	0.0	4.0	4.5
Merged-chr15-73646926-2	chr15	73646426	73647426	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME3A|LINE|L1	-22182.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107554008-2	chr4	107553508	107554508	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_147221, intron 2 of 10)	intron (NM_147221, intron 2 of 10)	119289.0	NM_147221	230587.0	Mm.331757	NM_147221	ENSMUSG00000034762	Glis1	Gli5|Gli6|GliH1	GLIS family zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43723153-1	chr19	43722653	43723653	+	585.0	f1_c57bl6.idr	intron (NM_053103, intron 9 of 12)	intron (NM_053103, intron 9 of 12)	29847.0	NM_144874	226139.0	Mm.248237	NM_144874	ENSMUSG00000040018	Cox15	2900026G05Rik	cytochrome c oxidase assembly protein 15	protein-coding	6.0	6.5	5.5	0.0	1.0	3.0
Merged-chr2-30445841-2	chr2	30445341	30446341	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138748, intron 9 of 9)	intron (NM_138748, intron 9 of 9)	28358.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-6140292-1	chr8	6139792	6140792	+	585.0	f0_c57.idr	Intergenic	Lx6|LINE|L1	-1035005.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	0.0	3.5	2.0	0.0	2.5	2.0
Merged-chr14-115753564-2	chr14	115753064	115754064	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175500, intron 6 of 7)	L1_Mur3|LINE|L1	-344012.0	NR_045761	75088.0	Mm.444706	NR_045761	ENSMUSG00000093551	4930505G20Rik	-	RIKEN cDNA 4930505G20 gene	ncRNA	0.5	0.0	0.0	0.5	0.0	0.0
Merged-chr18-61245456-2	chr18	61244956	61245956	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146086, intron 5 of 21)	(A)n|Simple_repeat|Simple_repeat	24957.0	NM_146086	225600.0	Mm.391106	NM_146086	ENSMUSG00000024575	Pde6a	Pdea|nmf282	phosphodiesterase 6A, cGMP-specific, rod, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43356403-2	chr5	43355903	43356903	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121049.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	0.0	1.5	0.0	0.0	0.0	1.0
Merged-chr2-26903552-1	chr2	26903052	26904052	+	585.0	f0_balb.idr	promoter-TSS (NM_009298)	promoter-TSS (NM_009298)	-665.0	NM_009298	20935.0	Mm.245577	NM_009298	ENSMUSG00000036160	Surf6	D2Wsu129e|Surf-6	surfeit gene 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-7874373-1	chr17	7873873	7874873	+	585.0	f0_balb.idr	Intergenic	RLTR20A4|LTR|ERVK	-51627.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98284682-2	chr12	98284182	98285182	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16047.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85652281-3	chr11	85651783	85652783	+	585.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	67461.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70635200-1	chr8	70634700	70635700	+	585.0	f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-2744.0	NM_001330687	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	119.0	229.5	205.5	47.0	53.0	63.0
Merged-chr5-143550298-2	chr5	143549798	143550798	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133703, intron 1 of 1)	intron (NM_133703, intron 1 of 1)	1592.0	NM_026050	67238.0	Mm.383219	NM_026050	ENSMUSG00000083012	Fam220a	1500026F15Rik|2810453I06Rik|AW047776|Acpin1|Sipar	family with sequence similarity 220, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62231176-1	chr18	62230676	62231676	+	585.0	f1_balb.idr	Intergenic	Intergenic	51076.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	2.5	33.5	6.0	9.0	34.5	8.0
Merged-chr4-53077656-2	chr4	53077156	53078156	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 19 of 49)	intron (NM_013454, intron 19 of 49)	65776.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-108749376-2	chr10	108748875	108749875	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358501, intron 3 of 10)	intron (NM_001358501, intron 3 of 10)	-49215.0	NM_203660	368203.0	Mm.452758	NM_203660	ENSMUSG00000112039	Gm5136	C6.1AL|EG368203	predicted gene 5136	protein-coding	1.5	5.0	0.5	0.0	0.0	2.0
Merged-chr8-69928217-1	chr8	69927717	69928717	+	585.0	f1_balb.idr	intron (NM_001286450, intron 3 of 12)	intron (NM_001286450, intron 3 of 12)	-25659.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	0.0	0.5	6.5	0.0	1.0	1.0
Merged-chr8-22397768-2	chr8	22397268	22398268	+	585.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045473)	promoter-TSS (NR_045473)	509.0	NM_001358971	18408.0	Mm.200907	NM_181325	ENSMUSG00000031482	Slc25a15	D630044L02Rik|Ornt1	solute carrier family 25 (mitochondrial carrier ornithine transporter), member 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-123797916-2	chr6	123797416	123798416	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001104639, intron 3 of 5)	Lx|LINE|L1	18945.0	NM_001104639	243628.0	Mm.469873	NM_001104639	ENSMUSG00000072780	Vmn2r24	EG243628	vomeronasal 2, receptor 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57554267-1	chr16	57553767	57554767	+	585.0	f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	5025.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	14.5	37.5	44.5	7.5	28.0	19.5
Merged-chr6-100215108-2	chr6	100214608	100215608	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72250.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125037892-2	chr6	125037392	125038392	+	585.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347452)	TTS (NM_001347452)	-1956.0	NM_133345	28019.0	Mm.262547	NM_133345	ENSMUSG00000030330	Ing4	D6Wsu147e|D6Xrf92|p29ING4	inhibitor of growth family, member 4	protein-coding	1.0	12.5	1.0	1.0	2.0	1.5
Merged-chr2-178768331-2	chr2	178767831	178768831	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	337816.0	NM_198656	381409.0	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr14-66260784-2	chr14	66260284	66261284	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	20268.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-161414719-2	chr2	161414219	161415219	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	-305633.0	NR_126509	71389.0	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr5-63867227-2	chr5	63866727	63867727	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	54732.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136796713-2	chr1	136796213	136797213	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100502.0	NR_037986	100503474.0	Mm.428276	NR_037986		Platr22	Gm16880	pluripotency associated transcript 22	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120264448-2	chr1	120263948	120264948	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085409, intron 2 of 5)	intron (NM_001085409, intron 2 of 5)	832.0	NM_133186	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22122278-3	chr9	22121763	22122763	+	585.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5068.0	NM_001357312	66126.0	Mm.29801	NM_170777	ENSMUSG00000013822	Elof1	1110011K10Rik	ELF1 homolog, elongation factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4115405-2	chr8	4114919	4115919	+	585.0	f0_balb.idr|f1_balb.idr	Intergenic	L1M4|LINE|L1	-9655.0	NM_026956	69142.0	Mm.171061	NM_026956	ENSMUSG00000051906	Cd209f	1810029C22Rik|AI647041|SIGNR8	CD209f antigen	protein-coding	0.5	4.5	9.5	5.0	3.0	7.0
Merged-chr6-139823566-2	chr6	139823081	139824081	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207683, intron 17 of 31)	intron (NM_207683, intron 17 of 31)	-17864.0	NM_011084	18705.0	Mm.333471	NM_011084	ENSMUSG00000030228	Pik3c2g	C80387|PI3K-C2-gamma	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma	protein-coding	2.5	3.5	0.0	6.5	0.0	3.5
Merged-chr15-78897234-1	chr15	78896734	78897734	+	585.0	f1_c57bl6.idr	Intergenic	Intergenic	-2534.0	NR_133564	20401.0	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	0.0	0.0	0.5	0.0	3.5	1.5
Merged-chr15-81670268-2	chr15	81669768	81670768	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289711, intron 4 of 17)	intron (NM_001289711, intron 4 of 17)	6379.0	NR_110362	214669.0	Mm.280768	NM_145993	ENSMUSG00000022394	L3mbtl2	4732493N06Rik|M4mbt	L3MBTL2 polycomb repressive complex 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-7175294-3	chr17	7174785	7175785	+	585.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011299, intron 1 of 20)	intron (NM_011299, intron 1 of 20)	5170.0	NM_011299	20112.0	Mm.268383	NM_011299	ENSMUSG00000023809	Rps6ka2	90kDa|D17Wsu134e|Rps6ka-rs1|Rsk3|p90rsk|pp90rsk	ribosomal protein S6 kinase, polypeptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59531335-2	chr4	59530835	59531835	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178164, intron 1 of 13)	ORR1B1|LTR|ERVL-MaLR	18029.0	NM_178164	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49946386-2	chr16	49945886	49946886	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9444.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-13549054-2	chr17	13548554	13549554	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045437, intron 1 of 3)	MTC|LTR|ERVL-MaLR	5040.0	NR_045436	72578.0	Mm.46549	NR_045436	ENSMUSG00000038347	2700054A10Rik	-	RIKEN cDNA 2700054A10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121378943-2	chr5	121378443	121379443	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359947, intron 4 of 11)	intron (NM_001359947, intron 4 of 11)	6466.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8965268-1	chr19	8964768	8965768	+	585.0	f1_c57bl6.idr	exon (NM_197993, exon 9 of 9)	exon (NM_197993, exon 9 of 9)	-1773.0	NM_026007	67160.0	Mm.247762	NM_026007	ENSMUSG00000071644	Eef1g	2610301D06Rik|AA407312|EF1G	eukaryotic translation elongation factor 1 gamma	protein-coding	0.0	0.0	0.5	4.0	0.0	0.0
Merged-chr15-100914858-1	chr15	100914358	100915358	+	585.0	f0_balb.idr	intron (NM_001077499, intron 1 of 26)	intron (NM_001077499, intron 1 of 26)	-21413.0	NM_011323	20273.0	Mm.385012	NM_011323	ENSMUSG00000023033	Scn8a	AI853486|C630029C19Rik|NaCh6|Nav1.6|dmu|med|mnd-2|mnd2|nmf2|nmf335|nmf58|nur14|seal	sodium channel, voltage-gated, type VIII, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-5658871-1	chr5	5658371	5659371	+	585.0	f0_balb.idr	intron (NM_172447, intron 1 of 22)	Lx3_Mus|LINE|L1	5361.0	NM_172447	207686.0	Mm.319007	NM_172447	ENSMUSG00000040473	Cfap69	4921525K03|A330021E22Rik|AI427898	cilia and flagella associated protein 69	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90377626-1	chr16	90377126	90378126	+	585.0	f0_balb.idr	Intergenic	Intergenic	-8771.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100795904-2	chr12	100795404	100796404	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361017, intron 3 of 14)	MIR|SINE|MIR	16847.0	NM_145448	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	0.0	0.0	3.0	0.0	0.0	1.0
Merged-chr11-115167792-1	chr11	115167292	115168292	+	585.0	f1_c57bl6.idr	intron (NM_012030, intron 1 of 5)	MIRb|SINE|MIR	4451.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	6.5	11.0	13.0	2.5	1.0	14.0
Merged-chr7-102540676-1	chr7	102540176	102541176	+	585.0	f0_balb.idr	Intergenic	Intergenic	5927.0	NM_147079	259083.0	Mm.377828	NM_147079	ENSMUSG00000073979	Olfr547	MOR31-4	olfactory receptor 547	protein-coding	7.0	19.0	6.0	14.5	18.5	8.0
Merged-chr13-107726817-2	chr13	107726317	107727317	+	585.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145456, exon 15 of 15)	exon (NM_145456, exon 15 of 15)	39420.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-144895526-2	chr4	144895026	144896026	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	2389.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21248928-1	chr16	21248428	21249428	+	585.0	f0_balb.idr	non-coding (NR_046162, exon 5 of 5)	non-coding (NR_046162, exon 5 of 5)	7138.0	NR_106145	102465781.0		NR_106145	ENSMUSG00000098400	Mir7680	Gm27417|mmu-mir-7680	microRNA 7680	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-112680940-2	chr4	112680425	112681425	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	67185.0	NM_001285963	329919.0	Mm.259806	NM_177865	ENSMUSG00000034359	Skint2	A430070M19|B7S3|Skint-2	selection and upkeep of intraepithelial T cells 2	protein-coding	3.0	6.0	0.0	0.0	0.0	0.5
Merged-chr1-161190435-1	chr1	161189935	161190935	+	585.0	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-31121.0	NM_001195189	100502590.0	Mm.449990	NM_001195189	ENSMUSG00000049160	Tex50	4930469G21Rik	testis expressed 50	protein-coding	2.0	8.0	7.0	15.5	6.5	10.0
Merged-chr2-60869227-2	chr2	60868727	60869727	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	12211.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-95401805-1	chr14	95401305	95402305	+	585.0	f1_balb.idr	Intergenic	Lx3A|LINE|L1	-479449.0	NM_001358241	66732.0	Mm.75060	NM_025733	ENSMUSG00000034689	4921530L21Rik	-	RIKEN cDNA 4921530L21 gene	protein-coding	4.5	0.0	1.0	0.0	1.0	4.5
Merged-chr7-29331377-2	chr7	29330877	29331877	+	585.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081028, exon 19 of 23)	exon (NM_001081028, exon 19 of 23)	27372.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-63966102-1	chr5	63965602	63966602	+	585.0	f0_balb.idr	intron (NM_145923, intron 1 of 6)	intron (NM_145923, intron 1 of 6)	2795.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	9.5	2.5	1.5	3.0	0.0	1.0
Merged-chr7-80205821-2	chr7	80205321	80206321	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	7380.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36692945-1	chr5	36692445	36693445	+	585.0	f1_c57bl6.idr	intron (NM_001081232, intron 1 of 8)	RSINE1|SINE|B4	3076.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	0.0	0.5	0.5	0.0	1.0	1.0
Merged-chr17-35205223-2	chr17	35204723	35205723	+	585.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105940)	promoter-TSS (NR_105940)	128.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	0.0	1.0	0.5	4.5	1.0	0.0
Merged-chr1-127233609-1	chr1	127233109	127234109	+	585.0	f1_balb.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	28623.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.0	2.0	1.0	1.5	4.5	1.0
Merged-chr19-29510064-2	chr19	29509564	29510564	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_015567, intron 3 of 3)	intron (NR_015567, intron 3 of 3)	11923.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153905708-2	chr1	153905208	153906208	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008131, intron 3 of 6)	B1_Mus2|SINE|Alu	5779.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-28475605-2	chr6	28475105	28476105	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4743.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-10011040-2	chr7	10010540	10011540	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERVK10C-int|LTR|ERVK	-18901.0	NM_001105156	625605.0	Mm.484763	NM_001105156	ENSMUSG00000096180	Vmn2r49	-	vomeronasal 2, receptor 49	protein-coding	0.0	0.0	0.0	0.0	5.5	0.0
Merged-chr17-32392713-2	chr17	32392213	32393213	+	585.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347343, exon 16 of 19)	exon (NM_001347343, exon 16 of 19)	-3274.0	NR_033525	22404.0	Mm.274948	NM_011717	ENSMUSG00000024050	Wiz	-	widely-interspaced zinc finger motifs	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24036919-1	chr5	24036419	24037419	+	585.0	f0_balb.idr	Intergenic	MER21C|LTR|ERVL	-6229.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	5.5	18.5	15.5	11.5	28.5	14.0
Merged-chr1-53876824-3	chr1	53876326	53877326	+	585.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 17 of 28)	intron (NM_001001883, intron 17 of 28)	27402.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	20.0	29.0	29.5	13.0	33.5	25.0
Merged-chr7-29384191-2	chr7	29383691	29384691	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081028, intron 8 of 22)	intron (NM_001081028, intron 8 of 22)	80186.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83584434-2	chr11	83583934	83584934	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 1 of 8)	MERVK26-int|LTR|ERVK	2373.0	NR_036452	100504464.0	Mm.341706	NR_036452	ENSMUSG00000051832	E230016K23Rik	-	RIKEN cDNA E230016K23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55576290-2	chr14	55575790	55576790	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026808, intron 1 of 1)	intron (NM_026808, intron 1 of 1)	616.0	NM_026808	68680.0	Mm.36758	NM_026808	ENSMUSG00000022215	Fitm1	1110028A07Rik|AV010547|Cg10671|Fit1	fat storage-inducing transmembrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-86585296-1	chr8	86584796	86585796	+	585.0	f0_c57.idr	Intergenic	Intergenic	-18706.0	NM_172912	244562.0	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42308193-2	chr10	42307693	42308693	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31451.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-52798878-1	chr1	52798378	52799378	+	585.0	f1_c57bl6.idr	intron (NM_008384, intron 2 of 5)	intron (NM_008384, intron 2 of 5)	18810.0	NM_008384	16329.0	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	2.5	9.0	4.0	4.0	15.5	0.5
Merged-chr6-24967869-1	chr6	24967369	24968369	+	585.0	f0_balb.idr	Intergenic	RSINE1|SINE|B4	-11744.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	10.0	0.5	6.5	2.0	12.5	3.5
Merged-chr5-129786594-2	chr5	129786113	129787113	+	584.916626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009838)	promoter-TSS (NM_009838)	640.0	NM_133900	100678.0	Mm.271784	NM_133900	ENSMUSG00000029446	Psph	AI480570|PSP|PSPase	phosphoserine phosphatase	protein-coding	24.0	85.0	52.5	40.5	70.5	58.0
Merged-chr9-5310665-2	chr9	5310165	5311165	+	584.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007609, intron 1 of 8)	Lx5c|LINE|L1	1816.0	NM_007609	12363.0	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90547994-3	chr2	90547496	90548496	+	584.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	32651.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	36.5	19.0	23.0	32.5	41.0	24.0
Merged-chr2-61815530-3	chr2	61815093	61816093	+	584.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	11140.0	NM_009322	21375.0	Mm.308525	NM_009322	ENSMUSG00000035033	Tbr1	-	T-box brain gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101172630-2	chr11	101172130	101173130	+	584.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007721)	TTS (NM_007721)	-1258.0	NM_001346769	217198.0	Mm.273254	NM_146030	ENSMUSG00000035172	Plekhh3	BC020025	pleckstrin homology domain containing, family H (with MyTH4 domain) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60370529-2	chr2	60370029	60371029	+	584.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_013825, intron 2 of 34)	intron (NM_013825, intron 2 of 34)	12702.0	NM_013825	17076.0	Mm.2074	NM_013825	ENSMUSG00000026980	Ly75	CD205|DEC-205|DEC205	lymphocyte antigen 75	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-57213244-2	chr12	57212744	57213744	+	584.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER65D|LTR|ERV1	-15772.0	NM_172577	217593.0	Mm.32835	NM_172577	ENSMUSG00000035472	Slc25a21	9930033G19Rik|A630030I10|BB158148	solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132571378-3	chr4	132570863	132571863	+	584.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081211, intron 1 of 1)	intron (NM_001081211, intron 1 of 1)	7296.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	2.0	5.0	9.0	13.5	10.0	17.5
Merged-chr6-100335598-3	chr6	100335076	100336076	+	584.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48218.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123450391-2	chr9	123449891	123450891	+	584.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_153168, intron 14 of 20)	intron (NM_153168, intron 14 of 20)	-28310.0	NM_013860	29806.0	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47526594-2	chr6	47526094	47527094	+	584.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_012042)	TTS (NM_012042)	68436.0	NM_001146689	14056.0	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66920769-2	chr9	66920269	66921269	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-1064.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88139454-2	chr8	88138954	88139954	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172757, intron 2 of 14)	ORR1C2|LTR|ERVL-MaLR	1248.0	NR_106039	102465649.0		NR_106039	ENSMUSG00000099080	Mir7071	Gm27623|mmu-mir-7071	microRNA 7071	ncRNA	2.5	7.5	1.0	3.0	11.0	2.0
Merged-chr11-94571065-2	chr11	94570566	94571566	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153807, intron 6 of 15)	intron (NM_153807, intron 6 of 15)	6019.0	NM_007689	12643.0	Mm.440523	NM_007689	ENSMUSG00000039084	Chad	SLRR4A	chondroadherin	protein-coding	0.0	2.0	0.0	2.5	1.5	0.0
Merged-chr6-25313190-2	chr6	25312690	25313690	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-357065.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6266823-2	chr19	6266323	6267323	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	1979.0	NR_029720	387187.0		NR_029720	ENSMUSG00000065523	Mir192	Mirn192|mir-192|mmu-mir-192	microRNA 192	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35629996-2	chr2	35629496	35630496	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290641, intron 1 of 15)	intron (NM_001290641, intron 1 of 15)	8015.0	NM_001114124	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64493058-2	chr17	64492558	64493558	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	52252.0	NR_105848	102465228.0		NR_105848	ENSMUSG00000098984	Mir6420	Gm28007|mmu-mir-6420	microRNA 6420	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23539920-2	chr13	23539420	23540420	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C-int|LTR|ERVK	3524.0	NM_178197	319182.0	Mm.352273	NM_178197	ENSMUSG00000114456	Hist1h2bh	H2b-221	histone cluster 1, H2bh	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-98096033-2	chr3	98095533	98096533	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 5 of 33)	intron (NM_010928, intron 5 of 33)	-64601.0	NM_027665	71078.0	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-37135179-2	chr15	37134679	37135679	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97857.0	NM_026496	252973.0	Mm.244612	NM_026496	ENSMUSG00000022286	Grhl2	0610015A08Rik|BOM|Tcfcp2l3|clft3	grainyhead like transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30426916-2	chr7	30426416	30427416	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172142, intron 8 of 10)	MER91B|DNA|hAT-Tip100	3641.0	NM_172142	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.0	13.5	1.5	7.5	4.0	3.0
Merged-chr5-139295232-2	chr5	139294732	139295732	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 3 of 10)	intron (NM_172723, intron 3 of 10)	30232.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34671925-2	chr2	34671425	34672425	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83307.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-29739547-2	chr5	29739047	29740047	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359198, intron 1 of 8)	intron (NM_001359198, intron 1 of 8)	-3611.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62183758-2	chr10	62183258	62184258	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10469.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141635638-2	chr7	141635138	141636138	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330001, intron 32 of 33)	intron (NM_001330001, intron 32 of 33)	14937.0	NR_106030	102466798.0		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96498470-2	chr3	96497970	96498970	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-26715.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	1.5	14.0	2.5	0.0	1.0	0.0
Merged-chr12-100212919-2	chr12	100212419	100213419	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12775.0	NM_001313934	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70658246-2	chr9	70657746	70658746	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1072.0	NM_172772	235461.0	Mm.170855	NM_172772	ENSMUSG00000042444	Mindy2	AI465301|B230380D07Rik|Fam63b|mKIAA1164	MINDY lysine 48 deubiquitinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-22074263-2	chr15	22073763	22074763	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	640721.0	NM_001165971	545091.0	Mm.475598	NM_001165971		Hnrnpa1l2-ps2	EG545091|Gm5803	heterogeneous nuclear ribonucleoprotein A1-like 2, pseudogene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25891213-2	chr15	25890713	25891713	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 2 of 8)	intron (NM_001034851, intron 2 of 8)	-42339.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111272740-2	chr12	111272240	111273240	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033603, intron 3 of 11)	intron (NM_033603, intron 3 of 11)	1644.0	NM_033603	93835.0	Mm.197639	NM_033603	ENSMUSG00000021278	Amn	-	amnionless	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32282516-2	chr12	32282016	32283016	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73867.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94354593-2	chr11	94354093	94355093	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 26 of 30)	L2c|LINE|L2	26592.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-60496501-2	chr3	60496001	60497001	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253713, intron 2 of 9)	intron (NM_001253713, intron 2 of 9)	-4678.0	NM_001253710	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-81499625-2	chr17	81499125	81500125	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	238762.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-73218352-2	chr4	73217852	73218852	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2A1|LINE|L1	186720.0	NM_001013393	433719.0	Mm.348294	NM_001013393	ENSMUSG00000066137	Gm11487	-	predicted gene 11487	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54644644-2	chr14	54644144	54645144	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019567, intron 9 of 12)	intron (NM_019567, intron 9 of 12)	-1534.0	NR_105913	102466771.0		NR_105913	ENSMUSG00000106169	Mir6948	mmu-mir-6948	microRNA 6948	ncRNA	2.5	0.0	1.5	0.0	0.0	0.5
Merged-chr12-110704235-2	chr12	110703735	110704735	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7840.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-64009528-2	chr10	64009028	64010028	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178678, intron 2 of 2)	intron (NM_178678, intron 2 of 2)	80727.0	NM_178678	216028.0	Mm.431318	NM_178678	ENSMUSG00000042846	Lrrtm3	9630044H04Rik	leucine rich repeat transmembrane neuronal 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31256144-2	chr5	31255644	31256644	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026298, intron 40 of 47)	intron (NM_026298, intron 40 of 47)	4438.0	NM_027221	69815.0	Mm.389609	NM_027221	ENSMUSG00000029149	Krtcap3	2010001C09Rik|AW321088|Kcp3	keratinocyte associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25856085-2	chr14	25855585	25856585	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013469, intron 1 of 14)	intron (NM_013469, intron 1 of 14)	13930.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.0	29.5	4.0	1.5	9.5	4.5
Merged-chr13-117033409-2	chr13	117032909	117033909	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-7893.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-3002472-2	chr18	3001972	3002972	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	120940.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79761481-2	chr10	79760981	79761981	+	584.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_144528, exon 6 of 9)	exon (NM_144528, exon 6 of 9)	5471.0	NM_144528	70294.0	Mm.466670	NM_144528	ENSMUSG00000035890	Rnf126	2610010O19Rik	ring finger protein 126	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-68787184-2	chr2	68786684	68787684	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74257.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78558547-2	chr11	78558047	78559047	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-7812.0	NM_133706	69071.0	Mm.29431	NM_133706	ENSMUSG00000037278	Tmem97	1810014L12Rik|AI115531|AL022956|D11Bhm182e	transmembrane protein 97	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-172977858-2	chr2	172977365	172978365	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1977.0	NM_012046	26972.0	Mm.23495	NM_012046	ENSMUSG00000005883	Spo11	AI449549|Spo11a|Spo11b	SPO11 meiotic protein covalently bound to DSB	protein-coding	17.0	11.5	3.5	2.5	7.0	14.0
Merged-chr7-141469146-2	chr7	141468646	141469646	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111050, intron 1 of 6)	intron (NM_001111050, intron 1 of 6)	357.0	NM_001111050	12476.0	Mm.30246	NM_009842	ENSMUSG00000025510	Cd151	PETA-3|SFA-1|Tspan24	CD151 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46799174-2	chr18	46798674	46799674	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-50865.0	NM_029008	74574.0	Mm.26379	NM_029008	ENSMUSG00000024481	Lvrn	4833403I15Rik|APQ|Aqpep	laeverin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93600840-2	chr2	93600340	93601340	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41594.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-83759342-3	chr2	83758832	83759832	+	584.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008402, intron 4 of 29)	intron (NM_008402, intron 4 of 29)	34935.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	5.5	20.5	3.5	6.5	21.5	10.5
Merged-chr17-86232037-2	chr17	86231537	86232537	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	55141.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	0.0	3.0	0.0	1.5	0.0	0.0
Merged-chr19-6356256-2	chr19	6355756	6356756	+	584.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291787)	TTS (NM_001291787)	-7434.0	NM_011750	22668.0	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98694470-2	chr11	98693970	98694970	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009439, intron 10 of 11)	intron (NM_009439, intron 10 of 11)	-6843.0	NM_009971	12985.0	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-104432438-2	chr11	104431938	104432938	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 2 of 14)	intron (NM_001359634, intron 2 of 14)	9853.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79929442-2	chr10	79928942	79929942	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001288625, intron 1 of 8)	intron (NM_001288625, intron 1 of 8)	2101.0	NM_001288625	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41308344-2	chr19	41307844	41308844	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 9 of 16)	intron (NM_031376, intron 9 of 16)	-44340.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.0	1.0	3.0	0.0	3.0	2.0
Merged-chr18-37994184-2	chr18	37993684	37994684	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139206, intron 4 of 32)	B4A|SINE|B4	-3239.0	NR_105946	102466913.0		NR_105946	ENSMUSG00000098297	Mir6980	Gm27969|mmu-mir-6980	microRNA 6980	ncRNA	3.5	0.5	2.5	5.0	3.0	0.5
Merged-chr16-76976069-2	chr16	76975569	76976569	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	34812.0	NR_040573	76601.0	Mm.396217	NR_040573	ENSMUSG00000100857	1700041M19Rik	-	RIKEN cDNA 1700041M19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101537400-2	chr7	101536900	101537900	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18402.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	31.5	46.5	30.5	21.0	38.0	30.5
Merged-chr2-71570433-2	chr2	71569933	71570933	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	MIRb|SINE|MIR	-23679.0	NM_010054	13392.0	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-16549619-2	chr18	16549119	16550119	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	259627.0	NM_007664	12558.0	Mm.257437	NM_007664	ENSMUSG00000024304	Cdh2	CDHN|N-CAD|Ncad	cadherin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-148058757-2	chr1	148058257	148059257	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1561070.0	NM_001145807	215378.0	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35678431-2	chr2	35677931	35678931	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290637, intron 3 of 16)	intron (NM_001290637, intron 3 of 16)	-13563.0	NM_001001602	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44732576-2	chr9	44732076	44733076	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153537, intron 1 of 21)	intron (NM_153537, intron 1 of 21)	2622.0	NM_153537	102693.0	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147551765-2	chr4	147551265	147552265	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1512.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-27435072-2	chr19	27434572	27435572	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	5035.0	NR_027987	107372.0	Mm.17942	NM_175354		C030016D13Rik	AW413347	RIKEN cDNA C030016D13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75788449-2	chr7	75787926	75788926	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59912.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45418195-2	chr9	45417695	45418695	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040732, intron 4 of 4)	intron (NR_040732, intron 4 of 4)	-12098.0	NM_001081270	114873.0	Mm.325499	NM_001081270	ENSMUSG00000032087	Dscaml1	4921507G06Rik|4930435C18Rik|BB239540|mKIAA1132	DS cell adhesion molecule like 1	protein-coding	0.0	0.0	7.5	0.0	0.0	0.5
Merged-chr2-167648817-2	chr2	167648317	167649317	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145538, intron 2 of 5)	intron (NM_145538, intron 2 of 5)	12727.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170692198-2	chr2	170691698	170692698	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39609.0	NM_029761	76829.0	Mm.41633	NM_029761	ENSMUSG00000027560	Dok5	2700055C10Rik	docking protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-108905284-2	chr10	108904784	108905784	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009306, intron 1 of 10)	Lx4A|LINE|L1	103827.0	NM_001358506	20979.0	Mm.289702	NM_009306	ENSMUSG00000035864	Syt1	AW124717|G630098F17Rik|SytI	synaptotagmin I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125164978-2	chr5	125164478	125165478	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253905, intron 1 of 42)	intron (NM_001253905, intron 1 of 42)	14236.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	4.0	2.0	4.5	4.5	9.5	2.5
Merged-chr9-96706153-2	chr9	96705653	96706653	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359959, intron 2 of 2)	intron (NM_001359959, intron 2 of 2)	13292.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-15012690-2	chr9	15012190	15013190	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019482, intron 2 of 4)	intron (NM_019482, intron 2 of 4)	32788.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107892767-2	chr13	107892267	107893267	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2703.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.0	0.0	1.5	13.0	81.0	41.0
Merged-chr3-104817070-2	chr3	104816570	104817570	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163440, intron 2 of 20)	intron (NM_001163440, intron 2 of 20)	1235.0	NM_008619	17454.0	Mm.1597	NM_008619	ENSMUSG00000002227	Mov10	C77703|Mov-10	Moloney leukemia virus 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19323631-2	chr7	19323131	19324131	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13586.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.0	3.5	0.0	0.0	2.5	0.5
Merged-chr3-138959156-2	chr3	138958656	138959656	+	584.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001040690, exon 8 of 15)	exon (NM_001040690, exon 8 of 15)	116045.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	2.0	5.5	1.0	0.0	1.0	3.5
Merged-chr7-19497162-2	chr7	19496662	19497662	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	11169.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	18.0	5.5	5.5	18.0	5.5	5.5
Merged-chr2-172443671-2	chr2	172443171	172444171	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025542, intron 1 of 8)	RSINE1|SINE|B4	3093.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77619985-2	chr18	77619485	77620485	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	-54849.0	NM_001164504	225743.0	Mm.23293	NM_001164504	ENSMUSG00000025427	Rnf165	2900024M11Rik|AI427432|Akd2|Ark2c|G630064H08Rik|Gm96	ring finger protein 165	protein-coding	0.0	6.0	0.5	2.0	0.5	0.0
Merged-chr1-171282349-2	chr1	171281849	171282849	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013919, intron 12 of 12)	intron (NM_013919, intron 12 of 12)	-1163.0	NM_008911	19044.0	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	3.5	3.5	3.5	4.0	12.0	6.0
Merged-chr5-134985938-2	chr5	134985438	134986438	+	584.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009902)	promoter-TSS (NM_009902)	-276.0	NM_009902	12739.0	Mm.158662	NM_009902	ENSMUSG00000070473	Cldn3	AI182374|Cpetr2|mRVP1	claudin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41484467-2	chr13	41483967	41484967	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	2893.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122924163-2	chr6	122923663	122924663	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199311, intron 1 of 5)	Lx4A|LINE|L1	2315.0	NM_199311	269799.0	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87033730-2	chr11	87033230	87034230	+	584.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025638)	TTS (NM_025638)	-39968.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53258738-2	chr18	53258238	53259238	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	13076.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69035419-2	chr11	69034919	69035919	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281465, intron 20 of 22)	intron (NM_001281465, intron 20 of 22)	-10218.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-48433612-2	chr6	48433125	48434125	+	584.333374	f0_c57.idr|f1_c57bl6.idr	intron (NM_001085417, intron 4 of 4)	intron (NM_001085417, intron 4 of 4)	11465.0	NM_001085415	68910.0	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	14.5	0.0	20.5	7.5	0.0	12.5
Merged-chr11-78243507-2	chr11	78243044	78244044	+	584.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009297, intron 1 of 36)	intron (NM_009297, intron 1 of 36)	2159.0	NM_009297	20926.0	Mm.20755	NM_009297	ENSMUSG00000002052	Supt6	5131400N11Rik|AI132449|SPT6|Supt6h|mKIAA0162	suppressor of Ty 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96333741-2	chr3	96333241	96334241	+	584.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11546.0	NR_152105	100504145.0	Mm.100443	NR_152105	ENSMUSG00000097851	Platr30	Gm17580	pluripotency associated transcript 30	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-122887642-2	chr9	122887162	122888162	+	584.333374	f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_001177505)	promoter-TSS (NM_001177505)	-809.0	NM_001177505	382118.0	Mm.86999	NM_001177505	ENSMUSG00000063488	Zkscan7	BC042569|Zfp167	zinc finger with KRAB and SCAN domains 7	protein-coding	28.0	52.0	29.5	27.5	51.0	25.0
Merged-chr12-34751714-1	chr12	34751214	34752214	+	584.333313	f0_balb.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	165381.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	9.0	1.0	5.0	2.0	5.0	2.5
Merged-chr11-83664340-3	chr11	83663790	83664790	+	584.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013652, intron 2 of 2)	intron (NM_013652, intron 2 of 2)	1706.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95884200-3	chr13	95883705	95884705	+	584.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	ORR1D2|LTR|ERVL-MaLR	7717.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	10.5	13.0	19.5	10.0	44.5	42.0
Merged-chr9-59724080-2	chr9	59723580	59724580	+	584.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16316.0	NM_001033498	546134.0	Mm.297580	NM_001033498	ENSMUSG00000074259	Gramd2	BC064463|Gramd2a	GRAM domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26605078-2	chr2	26604578	26605578	+	584.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026212)	promoter-TSS (NM_026212)	-661.0	NM_026212	67512.0	Mm.24244	NM_026212	ENSMUSG00000026922	Agpat2	2510002J07Rik|AV000834|BSCL|BSCL1|LPAAB|LPAAT-beta	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91842435-2	chr12	91841935	91842935	+	584.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039089, intron 2 of 20)	B1_Mur1|SINE|Alu	6722.0	NM_001039089	20338.0	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125337868-2	chr6	125337417	125338417	+	584.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011324, intron 4 of 11)	intron (NM_011324, intron 4 of 11)	-11806.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr6-124674866-2	chr6	124674366	124675366	+	584.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_149320, intron 1 of 11)	intron (NR_149320, intron 1 of 11)	11762.0	NM_145130	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141601716-2	chr4	141601307	141602307	+	584.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133754, intron 1 of 8)	intron (NM_133754, intron 1 of 8)	-1883.0	NM_001163256	74202.0	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	0.0	4.5	3.0	0.0	4.5	3.5
Merged-chr4-138000891-2	chr4	138000372	138001372	+	584.166626	f0_balb.idr|f1_balb.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	3047.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	8.5	14.0	13.5	15.5	28.0	36.0
Merged-chr14-95154832-2	chr14	95154332	95155332	+	584.166626	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-726422.0	NM_001358241	66732.0	Mm.75060	NM_025733	ENSMUSG00000034689	4921530L21Rik	-	RIKEN cDNA 4921530L21 gene	protein-coding	18.5	7.0	4.0	6.5	2.0	4.5
Merged-chr7-81167293-3	chr7	81166790	81167790	+	584.083313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_001004184, intron 14 of 17)	B2_Mm2|SINE|B2	-46514.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0.0	7.0	13.5	3.0	3.5	6.0
Merged-chr10-100147909-1	chr10	100147409	100148409	+	584.0	f0_balb.idr	Intergenic	Intergenic	132088.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91269872-2	chr16	91269372	91270372	+	584.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_016968, exon 1 of 1)	5' UTR (NM_016968, exon 1 of 1)	103.0	NM_016968	50914.0	Mm.39300	NM_016968	ENSMUSG00000046160	Olig1	AI836478|AW494459|Bhlhb6|Olg-1|Oligo1|bHLHe21	oligodendrocyte transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-23782095-1	chr19	23781595	23782595	+	584.0	f0_balb.idr	intron (NM_177034, intron 1 of 12)	intron (NM_177034, intron 1 of 12)	23219.0	NM_177034	319924.0	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	0.5	2.5	4.0	0.0	0.0	2.5
Merged-chr15-81024563-2	chr15	81024063	81025063	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 4 of 13)	intron (NM_001082536, intron 4 of 13)	46798.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11769400-2	chr19	11768900	11769900	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1015.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	0.0	1.0	3.0	0.0	0.0	3.0
Merged-chr5-129016315-1	chr5	129015815	129016815	+	584.0	f1_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-3841.0	NM_009391	19384.0	Mm.297440	NM_009391	ENSMUSG00000029430	Ran	-	RAN, member RAS oncogene family	protein-coding	0.5	6.0	1.0	5.0	6.0	2.5
Merged-chr2-45041950-2	chr2	45041450	45042450	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-18773.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-57591036-1	chr8	57590536	57591536	+	584.0	f1_balb.idr	intron (NM_001167981, intron 1 of 11)	intron (NM_001167981, intron 1 of 11)	-60717.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	16.0	41.0	27.0	22.0	30.5	28.0
Merged-chr1-190174356-2	chr1	190173856	190174856	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151620, intron 1 of 1)	intron (NR_151620, intron 1 of 1)	-3529.0	NM_008937	19130.0	Mm.132579	NM_008937	ENSMUSG00000010175	Prox1	A230003G05Rik|PROX-1	prospero homeobox 1	protein-coding	0.0	2.5	0.0	0.0	0.0	0.0
Merged-chr18-35889766-2	chr18	35889266	35890266	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	35079.0	NM_001357459	67393.0	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3853670-2	chr19	3853170	3854170	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271496, intron 1 of 11)	intron (NM_001271496, intron 1 of 11)	1897.0	NR_073190	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54247558-2	chr11	54247058	54248058	+	584.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009969, exon 4 of 4)	3' UTR (NM_009969, exon 4 of 4)	2341.0	NM_009969	12981.0	Mm.4922	NM_009969	ENSMUSG00000018916	Csf2	CSF|Csfgm|GMCSF|Gm-CSf|MGI-IGM	colony stimulating factor 2 (granulocyte-macrophage)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127517364-1	chr10	127516864	127517864	+	584.0	f1_balb.idr	TTS (NM_001098789)	TTS (NM_001098789)	2425.0	NM_001098789	407790.0	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	0.0	1.0	0.0	0.0	1.0	0.0
Merged-chr17-64624119-2	chr17	64623619	64624619	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	22470.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101576826-2	chr11	101576326	101577326	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152788, intron 21 of 22)	intron (NR_152788, intron 21 of 22)	-5416.0	NM_001359326	217203.0	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88677189-2	chr5	88676689	88677689	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1018.0	NM_178700	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27042477-1	chr17	27041977	27042977	+	584.0	f1_balb.idr	Intergenic	Intergenic	13218.0	NM_027544	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	5.5	1.5	11.5	0.0	0.0	0.5
Merged-chr4-133445830-1	chr4	133445330	133446330	+	584.0	f1_balb.idr	Intergenic	Intergenic	-34303.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	0.0	0.0	2.0	6.5	0.0	2.0
Merged-chr15-85684224-1	chr15	85683724	85684724	+	584.0	f1_balb.idr	Intergenic	Intergenic	-19549.0	NR_110483	102800312.0	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	7.0	6.0	2.5	0.0	1.5	0.0
Merged-chr6-134527778-1	chr6	134527278	134528278	+	584.0	f0_balb.idr	intron (NM_008514, intron 2 of 22)	intron (NM_008514, intron 2 of 22)	39135.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	25.0	30.0	19.5	18.0	33.5	12.5
Merged-chr11-100352837-1	chr11	100352337	100353337	+	584.0	f1_balb.idr	intron (NM_001359052, intron 6 of 12)	intron (NM_001359052, intron 6 of 12)	3291.0	NM_001359052	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	7.0	1.5	4.0	0.5	0.0	1.0
Merged-chr2-172388245-2	chr2	172387745	172388745	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-5549.0	NM_001080820	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-99059389-2	chr4	99058889	99059889	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026082, intron 12 of 47)	intron (NM_026082, intron 12 of 47)	28435.0	NM_013913	30924.0	Mm.28341	NM_013913	ENSMUSG00000028553	Angptl3	hypl	angiopoietin-like 3	protein-coding	1.0	0.5	1.0	1.5	0.5	5.0
Merged-chr4-35129195-2	chr4	35128695	35129695	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-22860.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118896553-2	chr10	118896053	118897053	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27650.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118504048-2	chr14	118503548	118504548	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163676, intron 26 of 29)	intron (NM_001163676, intron 26 of 29)	88424.0	NR_105815	102465208.0		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73329159-2	chr12	73328659	73329659	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037717, intron 5 of 15)	intron (NM_001037717, intron 5 of 15)	42311.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-40497179-1	chr8	40496679	40497679	+	584.0	f0_balb.idr	intron (NR_155265, intron 5 of 6)	intron (NR_155265, intron 5 of 6)	13300.0	NM_001361938	18983.0	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	4.5	22.5	7.0	15.0	27.0	25.0
Merged-chr5-98713073-1	chr5	98712573	98713573	+	584.0	f0_balb.idr	intron (NM_001024614, intron 3 of 5)	intron (NM_001024614, intron 3 of 5)	-141342.0	NM_173404	110075.0	Mm.136461	NM_173404	ENSMUSG00000029335	Bmp3	9530029I04Rik	bone morphogenetic protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63405143-2	chr4	63404643	63405643	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1698.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-117495047-2	chr7	117494547	117495547	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175645, intron 2 of 11)	intron (NM_175645, intron 2 of 11)	114068.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-114900807-1	chr9	114900307	114901307	+	584.0	f1_c57bl6.idr	3' UTR (NM_175380, exon 8 of 8)	3' UTR (NM_175380, exon 8 of 8)	33180.0	NM_175380	333433.0	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	2.0	9.0	14.0	0.0	0.5	2.0
Merged-chr13-107940434-1	chr13	107939934	107940934	+	584.0	f0_balb.idr	Intergenic	Intergenic	-50370.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75924542-2	chr15	75924042	75925042	+	584.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_031201)	TTS (NM_031201)	-2982.0	NM_025412	66194.0	Mm.250599	NM_025412	ENSMUSG00000022571	Pycrl	1110058B13Rik|2700073G24Rik|Pycr3	pyrroline-5-carboxylate reductase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84991572-2	chr8	84991161	84992161	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133255, intron 3 of 21)	intron (NM_133255, intron 3 of 21)	1066.0	NM_001167991	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	10.0	8.5	9.0	9.0	1.5	4.5
Merged-chr2-167639713-2	chr2	167639213	167640213	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7708.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129741886-1	chr6	129741386	129742386	+	584.0	f1_c57bl6.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	-1402.0	NM_177155	320407.0	Mm.123265	NM_177155	ENSMUSG00000043932	Klri2	A530090P03Rik	killer cell lectin-like receptor family I member 2	protein-coding	1.0	9.0	2.5	8.0	12.5	3.5
Merged-chr12-25310811-1	chr12	25310311	25311311	+	584.0	f1_c57bl6.idr	Intergenic	Intergenic	181637.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.0	20.0	10.0	0.0	1.0	9.5
Merged-chr6-85391947-1	chr6	85391447	85392447	+	584.0	f0_balb.idr	Intergenic	Intergenic	-17313.0	NM_001003955	52055.0	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-72735594-2	chr1	72735094	72736094	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24334.0	NM_009084	19981.0	Mm.21529	NM_009084	ENSMUSG00000046330	Rpl37a	-	ribosomal protein L37a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38303502-2	chr15	38303002	38304002	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-2791.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46072315-3	chr8	46071855	46072855	+	584.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207213, intron 5 of 17)	MTD|LTR|ERVL-MaLR	51791.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17839660-2	chr17	17839150	17840150	+	584.0	f0_balb.idr|f1_c57bl6.idr	TTS (NM_001162909)	TTS (NM_001162909)	8675.0	NM_001162909	75202.0	Mm.227456	NM_029205	ENSMUSG00000080316	Spaca6	4930546H06Rik|9530079D04Rik|B230206P06Rik|Ncrna00085|SPACA6A|let-7e|mir-125a|mir-99b	sperm acrosome associated 6	protein-coding	1.0	8.5	4.0	3.0	7.5	2.0
Merged-chr9-13558045-2	chr9	13557546	13558546	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61943.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	11.0	4.0	1.5	11.0	0.5	1.0
Merged-chr8-13642806-1	chr8	13642306	13643306	+	584.0	f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	34781.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	1.0	3.5	0.0	1.5	0.0	2.0
Merged-chr11-69120679-1	chr11	69120179	69121179	+	584.0	f1_c57bl6.idr	intron (NM_033041, intron 1 of 3)	intron (NM_033041, intron 1 of 3)	226.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	23.0	16.0	11.0	6.5	5.0	8.5
Merged-chr3-108424419-2	chr3	108423919	108424919	+	584.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001204979)	TTS (NM_001204979)	-8925.0	NM_001004177	53883.0	Mm.39728	NM_017392	ENSMUSG00000068740	Celsr2	Adgrc2|EGFL2|Flamingo1|flamingo|mKIAA0279|mfmi1	cadherin, EGF LAG seven-pass G-type receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141795099-2	chr4	141794560	141795560	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355176, intron 1 of 8)	intron (NM_001355176, intron 1 of 8)	1448.0	NM_001277932	12371.0	Mm.88829	NM_015733	ENSMUSG00000028914	Casp9	AI115399|APAF-3|AW493809|CASP-9|Caspase-9|ICE-LAP6|Mch6	caspase 9	protein-coding	0.5	2.5	6.5	0.0	7.0	8.0
Merged-chr14-66234849-2	chr14	66234349	66235349	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	MIRb|SINE|MIR	-21025.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76054499-3	chr16	76053964	76054964	+	584.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53680.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23694911-2	chr13	23694420	23695420	+	584.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010377)	promoter-TSS (NM_010377)	-891.0	NM_010377	107970.0	Mm.8048	NM_010377	ENSMUSG00000036211	Hist1h1t	H1.6|H1ft|H1t	histone cluster 1, H1t	protein-coding	2.5	0.0	3.0	4.5	0.0	3.0
Merged-chr6-116005404-2	chr6	116004904	116005904	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-10399.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-56485398-1	chr8	56484898	56485898	+	584.0	f1_c57bl6.idr	promoter-TSS (NR_131020)	promoter-TSS (NR_131020)	-430.0	NR_131020	75123.0	Mm.72666	NR_131020	ENSMUSG00000110310	4930518J21Rik	-	RIKEN cDNA 4930518J21 gene	ncRNA	10.5	12.0	3.0	0.5	10.5	5.0
Merged-chr15-89426879-2	chr15	89426379	89427379	+	584.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_004843, exon 9 of 27)	non-coding (NR_004843, exon 9 of 27)	-1017.0	NM_009948	12895.0	Mm.227738	NM_009948	ENSMUSG00000078937	Cpt1b	Cpt1|Cpt1-m|Cpti|Cpti-m|M-cpti	carnitine palmitoyltransferase 1b, muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64768957-1	chr9	64768457	64769457	+	584.0	f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-31201.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137749378-1	chr5	137748878	137749878	+	584.0	f0_balb.idr	intron (NM_023910, intron 2 of 4)	intron (NM_023910, intron 2 of 4)	3409.0	NM_029805	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-18444879-1	chr4	18444379	18445379	+	584.0	f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	591421.0	NM_019724	17389.0	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT-MMP 3|MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding	1.5	3.5	4.5	0.0	0.0	0.0
Merged-chr12-36117328-1	chr12	36116828	36117828	+	584.0	f0_balb.idr	intron (NM_025840, intron 6 of 11)	intron (NM_025840, intron 6 of 11)	26949.0	NR_003649	432649.0	Mm.347860	NM_001014396	ENSMUSG00000059301	Gm5434	EG432649	ubiquitin-conjugating enzyme E2F (putative) pseudogene	pseudo	0.0	0.0	1.5	7.5	5.0	3.5
Merged-chr15-52953568-1	chr15	52953068	52954068	+	584.0	f0_c57.idr	Intergenic	Intergenic	241123.0	NM_027212	69790.0	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-87754828-2	chr10	87754328	87755328	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-103437.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	3.5	1.5	2.5	0.0	3.5	2.0
Merged-chr13-108319321-2	chr13	108318821	108319821	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178683, intron 1 of 10)	RMER17B|LTR|ERVK	2984.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr10-107734752-2	chr10	107734252	107735252	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14725.0	NM_001081432	237523.0	Mm.391418	NM_001081432	ENSMUSG00000035916	Ptprq	-	protein tyrosine phosphatase, receptor type, Q	protein-coding	1.5	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74331403-2	chr1	74330903	74331903	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039509, intron 2 of 9)	intron (NM_001039509, intron 2 of 9)	-1207.0	NM_019999	56695.0	Mm.384726	NM_019999	ENSMUSG00000026179	Pnkd	2210013N15Rik|2810403H05Rik|AI854243|Brp17|MNCb-5687|MR-1|Tahccp2	paroxysmal nonkinesiogenic dyskinesia	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115630510-2	chr5	115630010	115631010	+	584.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_027810)	TTS (NR_027810)	1306.0	NR_027810	66123.0	Mm.133063	NM_021417	ENSMUSG00000107121	1110006O24Rik	-	RIKEN cDNA 1110006O24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110786850-3	chr7	110786347	110787347	+	584.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009667, intron 2 of 14)	intron (NM_009667, intron 2 of 14)	14243.0	NM_009667	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74401492-2	chr1	74400992	74401992	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7182.0	NR_029743	387219.0		NR_029743	ENSMUSG00000065468	Mir26b	Mirn26b|mir-26b|mmu-mir-26b	microRNA 26b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100109688-2	chr12	100109188	100110188	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2643.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53122896-1	chr4	53122396	53123396	+	584.0	f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	36999.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	8.0	39.0	28.5	8.0	41.5	30.0
Merged-chr9-41052241-2	chr9	41051732	41052732	+	584.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	B1_Mur1|SINE|Alu	27274.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	16.0	30.0	26.0	1.5	5.5	20.0
Merged-chr8-71560022-1	chr8	71559522	71560522	+	584.0	f1_c57bl6.idr	TTS (NM_145598)	TTS (NM_145598)	-1151.0	NM_001100462	434325.0	Mm.33613	NM_001100462	ENSMUSG00000043664	Tmem221	-	transmembrane protein 221	protein-coding	14.0	5.5	1.0	15.5	19.5	4.0
Merged-chr14-20691967-2	chr14	20691467	20692467	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172596, intron 18 of 22)	intron (NM_172596, intron 18 of 22)	1332.0	NR_105911	102465571.0		NR_105911	ENSMUSG00000098602	Mir6946	Gm27799|mmu-mir-6946	microRNA 6946	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-85193401-2	chr10	85192901	85193901	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8347.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73614856-2	chr15	73614356	73615356	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033219, intron 1 of 7)	intron (NM_001033219, intron 1 of 7)	2468.0	NM_001357747	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101070952-2	chr4	101070455	101071455	+	584.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_183024, intron 1 of 11)	intron (NM_183024, intron 1 of 11)	1917.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80014016-1	chr12	80013516	80014516	+	584.0	f0_balb.idr	Intergenic	Intergenic	-77752.0	NR_131074	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-49575748-2	chr15	49575248	49576248	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-783759.0	NM_001081391	239420.0	Mm.309363	NM_001081391	ENSMUSG00000022311	Csmd3	4930500N14Rik|mKIAA1894	CUB and Sushi multiple domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr4-132785679-2	chr4	132785179	132786179	+	584.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033308, exon 4 of 6)	exon (NM_001033308, exon 4 of 6)	10685.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119358216-2	chr8	119357716	119358716	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13678.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6243037-1	chr19	6242537	6243537	+	584.0	f0_balb.idr	intron (NM_194348, intron 1 of 39)	intron (NM_194348, intron 1 of 39)	1369.0	NM_194348	329015.0	Mm.277384	NM_194348	ENSMUSG00000024773	Atg2a	1810013C15Rik|A830054M12|BC023754|mKIAA0404	autophagy related 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-48856116-1	chr11	48855616	48856616	+	584.0	f0_c57.idr	Intergenic	Intergenic	15304.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58965687-1	chr11	58965187	58966187	+	584.0	f1_balb.idr	intron (NM_031172, intron 2 of 6)	intron (NM_031172, intron 2 of 6)	1906.0	NM_031172	56631.0	Mm.179733	NM_031172	ENSMUSG00000036964	Trim17	Rnf16|terf	tripartite motif-containing 17	protein-coding	4.0	32.0	3.0	2.0	32.5	7.0
Merged-chr15-36488751-2	chr15	36488251	36489251	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358007, intron 2 of 4)	intron (NM_001358007, intron 2 of 4)	7983.0	NM_001358007	68839.0	Mm.396537	NM_175134	ENSMUSG00000048307	Ankrd46	1110054N06Rik|AI314978|AI987733	ankyrin repeat domain 46	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95946048-2	chr16	95945548	95946548	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16971.0	NR_040484	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116330679-2	chr7	116330179	116331179	+	584.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026533)	TTS (NM_026533)	3511.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-34874396-2	chr4	34873896	34874896	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013889, intron 1 of 7)	intron (NM_013889, intron 1 of 7)	8552.0	NM_013889	30046.0	Mm.38193	NM_013889	ENSMUSG00000039967	Zfp292	5730450D02Rik|5830493J20Rik|9430062L07Rik|AI449016|Krox-10|Zfp-15|Zfp15|Zn-15|Zn-16|mKIAA0530	zinc finger protein 292	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-112444085-1	chr14	112443585	112444585	+	584.0	f1_balb.idr	Intergenic	Lx8|LINE|L1	768970.0	NM_198865	75409.0	Mm.235097	NM_029273	ENSMUSG00000033214	Slitrk5	2610019D03Rik	SLIT and NTRK-like family, member 5	protein-coding	3.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148092835-2	chr4	148092335	148093335	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4771.0	NM_001301281	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125443293-1	chr7	125442793	125443793	+	584.0	f1_balb.idr	Intergenic	RMER10B|LTR|ERVL	-1327.0	NM_029842	77035.0	Mm.307239	NM_029842	ENSMUSG00000030752	Kdm8	3110005O21Rik|Jmjd5	lysine (K)-specific demethylase 8	protein-coding	4.5	3.5	0.5	2.0	2.0	8.5
Merged-chr2-84598008-2	chr2	84597461	84598461	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51519.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	1.0	1.5	1.0	0.0	0.0	0.0
Merged-chr17-80567447-2	chr17	80566947	80567947	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360144, intron 1 of 9)	MMERVK10D3_I-int|LTR|ERVK	-3613.0	NM_001033443	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98799834-1	chr12	98799334	98800334	+	584.0	f0_balb.idr	intron (NM_001081191, intron 35 of 43)	intron (NM_001081191, intron 35 of 43)	28812.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153607774-2	chr2	153607271	153608271	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25010.0	NM_001195390	99311.0	Mm.294478	NM_133850	ENSMUSG00000056941	Commd7	2310010I22Rik|AW060956|mU3	COMM domain containing 7	protein-coding	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164035523-2	chr2	164035023	164036023	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114079, intron 6 of 13)	intron (NM_001114079, intron 6 of 13)	10299.0	NM_001114079	381404.0	Mm.82301	NM_001114079	ENSMUSG00000054582	Pabpc1l	1810053B01Rik|Epab	poly(A) binding protein, cytoplasmic 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-156134241-1	chr4	156133741	156134741	+	584.0	f0_balb.idr	TTS (NM_001220499)	TTS (NM_001220499)	6753.0	NM_001220499	100045778.0		NM_001220499	ENSMUSG00000110404	Rnf223	9930005F22Rik	ring finger 223	protein-coding	1.0	1.5	0.0	0.0	2.0	2.0
Merged-chr19-11911258-1	chr19	11910758	11911758	+	584.0	f0_balb.idr	Intergenic	Intergenic	-1141.0	NM_172635	225929.0	Mm.42711	NM_172635	ENSMUSG00000046139	Patl1	AV312086|Pat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding	78.5	241.5	211.5	167.0	392.0	356.5
Merged-chr2-113822742-2	chr2	113822242	113823242	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009162, intron 2 of 5)	intron (NM_009162, intron 2 of 5)	6349.0	NM_009162	20394.0	Mm.4836	NM_009162	ENSMUSG00000023236	Scg5	7B2|AI325031|Sgne-1|Sgne1	secretogranin V	protein-coding	0.0	0.0	1.5	0.0	0.5	1.0
Merged-chr16-22440807-2	chr16	22440307	22441307	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1237.0	NM_023794	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-119129695-1	chr10	119129195	119130195	+	584.0	f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	36790.0	NR_045348	73400.0	Mm.416864	NR_045348	ENSMUSG00000100681	1700064J06Rik	-	RIKEN cDNA 1700064J06 gene	ncRNA	5.0	7.5	3.0	0.5	6.5	6.5
Merged-chr4-150582632-1	chr4	150582132	150583132	+	584.0	f0_balb.idr	intron (NM_001085492, intron 12 of 22)	B1_Mus2|SINE|Alu	69542.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	3.0	9.0	6.5	3.5	22.0	9.5
Merged-chr4-109165722-2	chr4	109165222	109166222	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346502, intron 2 of 23)	intron (NM_001346502, intron 2 of 23)	-27809.0	NM_001355190	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0.0	0.0	1.0	0.5	0.0	1.0
Merged-chr4-136120874-1	chr4	136120374	136121374	+	584.0	f1_c57bl6.idr	Intergenic	Intergenic	-22948.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	8.5	36.5	27.0	20.5	21.5	36.5
Merged-chr10-127625369-2	chr10	127624869	127625869	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4221.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	4.5	2.5	2.0	5.5	2.5	1.5
Merged-chr1-21129010-2	chr1	21128510	21129510	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-49785.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102741678-1	chr4	102741178	102742178	+	584.0	f0_balb.idr	Intergenic	Intergenic	-18457.0	NM_001285860	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	1.0	14.0	5.5	7.5	3.0	7.0
Merged-chr4-149708707-1	chr4	149708207	149709207	+	584.0	f1_balb.idr	Intergenic	Intergenic	-7078.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	5.0	48.0	29.0	9.5	42.5	14.0
Merged-chr19-38823465-1	chr19	38822965	38823965	+	584.0	f1_balb.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-4228.0	NM_021315	57753.0	Mm.86482	NM_021315	ENSMUSG00000024999	Noc3l	AF233884|Fad24	NOC3 like DNA replication regulator	protein-coding	3.0	0.0	5.0	1.0	0.0	4.5
Merged-chr6-66998397-2	chr6	66997897	66998897	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177560, intron 3 of 4)	intron (NM_001177560, intron 3 of 4)	-38202.0	NR_040278	320172.0	Mm.449039	NR_040278	ENSMUSG00000087231	E230016M11Rik	-	RIKEN cDNA E230016M11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99261622-1	chr5	99261122	99262122	+	584.0	f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-8695.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.5	0.5	2.0	0.0	0.0	5.0
Merged-chr11-8623628-2	chr11	8623128	8624128	+	583.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	URR1A|DNA|hAT-Charlie	40907.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-26581723-3	chr11	26581227	26582227	+	583.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027260, intron 2 of 12)	intron (NM_027260, intron 2 of 12)	12193.0	NM_027260	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	4.5	12.5	21.5	3.0	11.5	9.5
Merged-chr2-163601503-2	chr2	163601011	163602011	+	583.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181734)	promoter-TSS (NM_181734)	-803.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26235149-2	chr17	26234649	26235649	+	583.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	9093.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	34.0	108.0	78.0	36.0	70.0	35.0
Merged-chr14-30628880-2	chr14	30628380	30629380	+	583.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2672.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr4-58913355-2	chr4	58912855	58913855	+	583.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172381)	promoter-TSS (NM_172381)	-606.0	NM_172381	230249.0	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|Ecpas|mKIAA0368	expressed sequence AI314180	protein-coding	13.5	42.5	33.5	17.0	26.0	34.5
Merged-chr9-56112873-2	chr9	56112373	56113373	+	583.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	22897.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70657913-2	chr8	70657425	70658425	+	583.75	f0_c57.idr|f1_c57bl6.idr	intron (NM_023217, intron 1 of 4)	intron (NM_023217, intron 1 of 4)	1813.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	7.5	2.5	5.0	0.0	5.0	1.5
Merged-chr7-137314982-2	chr7	137314482	137315482	+	583.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010096)	promoter-TSS (NM_010096)	-537.0	NM_010096	13593.0	Mm.258708	NM_010096	ENSMUSG00000010476	Ebf3	3110018A08Rik|O/E-2|mKIAA4201	early B cell factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-73233666-2	chr16	73233166	73234166	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	570517.0	NM_019413	19876.0	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-44075810-2	chr17	44075310	44076310	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-2992.0	NM_001168620	83965.0	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	14.5	15.0	13.0	7.5	10.5	6.0
Merged-chr5-135969106-2	chr5	135968606	135969606	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160366, intron 2 of 10)	B3|SINE|B2	5370.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46250474-2	chr17	46249974	46250974	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145353, intron 4 of 8)	intron (NM_145353, intron 4 of 8)	2394.0	NM_145353	28064.0	Mm.248769	NM_145353	ENSMUSG00000071074	Yipf3	C6orf109|D17Wsu94e|KLIP1	Yip1 domain family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-37601686-2	chr6	37601186	37602186	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCa|LINE|L1	71513.0	NM_145364	208665.0	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-93189075-2	chr13	93188575	93189575	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_154997, intron 1 of 15)	intron (NR_154997, intron 1 of 15)	3342.0	NM_001361536	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	63.5	196.0	82.0	70.5	167.5	68.5
Merged-chr1-65184757-2	chr1	65184257	65185257	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111320, intron 1 of 8)	intron (NM_001111320, intron 1 of 8)	1722.0	NM_001111320	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75102957-2	chr10	75102457	75103457	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081412, intron 1 of 22)	MLT1A0|LTR|ERVL-MaLR	42061.0	NM_001081412	110279.0	Mm.333722	NM_001081412	ENSMUSG00000009681	Bcr	5133400C09Rik|AI561783|AI853148|mKIAA3017	breakpoint cluster region	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74456958-2	chr17	74456458	74457458	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 1 of 8)	ORR1A2|LTR|ERVL-MaLR	2150.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146832097-1	chr5	146831597	146832597	+	583.5	f1_balb.idr	promoter-TSS (NM_019647)	promoter-TSS (NM_019647)	-793.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	63.5	211.5	132.5	101.0	204.5	169.0
Merged-chr3-147502631-2	chr3	147502131	147503131	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	650264.0	NM_001302957	70892.0	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	0.0	1.5	0.0	1.5	3.0	7.5
Merged-chr13-12359462-2	chr13	12358962	12359962	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18730.0	NM_033268	11472.0	Mm.37638	NM_033268	ENSMUSG00000052374	Actn2	1110008F24Rik	actinin alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6349429-2	chr19	6348929	6349929	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_117093, intron 23 of 30)	intron (NR_117093, intron 23 of 30)	2949.0	NR_105955	102465598.0		NR_105955	ENSMUSG00000099230	Mir6989	Gm27885|mmu-mir-6989	microRNA 6989	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87735959-2	chr11	87735459	87736459	+	583.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172448)	TTS (NM_172448)	-1592.0	NM_001355753	20922.0	Mm.622	NM_009296	ENSMUSG00000020485	Supt4a	AL022777|Supt4h|Supt4h1|Supt4h1a	suppressor of Ty 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149322144-2	chr4	149321644	149322644	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12495.0	NR_131918	74310.0	Mm.440455	NR_131918	ENSMUSG00000085286	Ube4bos3	1700121F15Rik	ubiquitination factor E4B, opposite strand 3	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-125430254-2	chr1	125429754	125430754	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205386, intron 2 of 12)	ID_B1|SINE|B4	5473.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167893562-2	chr2	167893062	167894062	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38765.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr6-88812395-2	chr6	88811895	88812895	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166249, intron 5 of 7)	intron (NM_001166249, intron 5 of 7)	29540.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-91243386-2	chr10	91242886	91243886	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22767.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108308248-2	chr3	108307748	108308748	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019972, intron 1 of 19)	Lx9|LINE|L1	24184.0	NM_019972	20661.0	Mm.157119	NM_019972	ENSMUSG00000068747	Sort1	2900053A11Rik|AI852375|Ntr3|Ntsr3	sortilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50215881-2	chr11	50215381	50216381	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5061.0	NM_011018	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-49215683-2	chr6	49215183	49216183	+	583.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023670)	promoter-TSS (NM_023670)	-729.0	NM_023670	140488.0	Mm.281018	NM_023670	ENSMUSG00000029814	Igf2bp3	2610101N11Rik|AA522010|AL022933|AU045931|IMP-3|IMP3|Koc13|Neilsen|mimp3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-69490887-2	chr7	69490387	69491387	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5207.0	NR_045940	73796.0	Mm.410832	NR_045940	ENSMUSG00000108885	4930402F11Rik	-	RIKEN cDNA 4930402F11 gene	ncRNA	0.0	2.0	0.5	0.0	0.0	0.5
Merged-chr11-12855234-2	chr11	12854733	12855733	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-390273.0	NM_001282993	12808.0	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding	1.0	0.0	2.0	0.0	0.0	1.5
Merged-chr3-51663789-2	chr3	51663289	51664289	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_174995, intron 1 of 4)	intron (NM_174995, intron 1 of 4)	2610.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6854900-2	chr19	6854400	6855400	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081291, intron 10 of 26)	intron (NM_001081291, intron 10 of 26)	3311.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21452768-2	chr9	21452268	21453268	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 1 of 19)	intron (NM_001357721, intron 1 of 19)	27860.0	NM_001357719	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93192809-1	chr2	93192309	93193309	+	583.5	f0_c57.idr	intron (NM_001356537, intron 2 of 8)	intron (NM_001356537, intron 2 of 8)	5261.0	NM_001025246	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97317574-2	chr7	97317074	97318074	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177412, intron 5 of 9)	MTC|LTR|ERVL-MaLR	8390.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31373407-2	chr14	31372907	31373907	+	583.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011894, exon 9 of 9)	3' UTR (NM_011894, exon 9 of 9)	36769.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97665687-2	chr15	97665187	97666187	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40135.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94073908-2	chr11	94073408	94074408	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025430, intron 5 of 25)	RSINE1|SINE|B4	29703.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	47.0	80.0	73.0	42.5	118.0	79.0
Merged-chr1-191816310-2	chr1	191815810	191816810	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5163.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	0.0	6.5	0.0	0.0	0.0	0.0
Merged-chr4-133188242-3	chr4	133187787	133188787	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 4 of 8)	intron (NM_153423, intron 4 of 8)	-7368.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	16.0	34.0	10.0	30.0	25.0	16.0
Merged-chr11-95840800-2	chr11	95840300	95841300	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163464, intron 1 of 7)	intron (NM_001163464, intron 1 of 7)	-1495.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	13.0	31.5	21.5	11.5	32.0	21.5
Merged-chr11-116010804-2	chr11	116010304	116011304	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016905, intron 2 of 7)	intron (NM_016905, intron 2 of 7)	1915.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100849257-2	chr11	100848757	100849757	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113563, intron 1 of 18)	MIR3|SINE|MIR	1328.0	NM_001113563	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-103654345-2	chr5	103653845	103654845	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028824, intron 2 of 3)	B3|SINE|B2	1379.0	NM_028824	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-53912345-2	chr10	53911845	53912845	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 11 of 12)	MTEb-int|LTR|ERVL-MaLR	-161436.0	NM_001081428	75906.0	Mm.436785	NM_001081428	ENSMUSG00000019856	Fam184a	3110012E06Rik|4930438C08Rik|4930589M24Rik	family with sequence similarity 184, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117156631-2	chr4	117156131	117157131	+	583.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009098)	promoter-TSS (NM_009098)	-499.0	NM_009098	20116.0	Mm.260904	NM_009098	ENSMUSG00000047675	Rps8	-	ribosomal protein S8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-34432137-2	chr4	34431637	34432637	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118478.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0.0	0.0	2.0	0.0	1.0	0.0
Merged-chr5-72797395-2	chr5	72796895	72797895	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	MTEa|LTR|ERVL-MaLR	-44618.0	NM_001122754	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-84119886-2	chr6	84119386	84120386	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 30 of 54)	intron (NM_001077694, intron 30 of 54)	100500.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21149242-2	chr9	21148742	21149742	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016742, intron 1 of 7)	RSINE1|SINE|B4	664.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-92636962-2	chr12	92636462	92637462	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	X2_LINE|LINE|CR1	-787805.0	NM_011344	20338.0	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-60006191-2	chr17	60005691	60006691	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-992869.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91816959-2	chr12	91816459	91817459	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039089, intron 14 of 20)	intron (NM_001039089, intron 14 of 20)	-30523.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30806921-2	chr2	30806421	30807421	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1047.0	NM_001356435	66617.0	Mm.33167	NM_170592	ENSMUSG00000026857	Ntmt1	2610205E22Rik|AL033331|AL033332|Mettl11a|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-151866218-2	chr4	151865718	151866718	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCTG)n|Simple_repeat|Simple_repeat	-4450.0	NM_001195565	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	0.0	2.0	0.0	0.0	2.0	0.0
Merged-chr17-35204076-2	chr17	35203603	35204603	+	583.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105940)	TTS (NR_105940)	454.0	NR_105940	102466990.0		NR_105940	ENSMUSG00000099006	Mir6974	Gm27658|mmu-mir-6974	microRNA 6974	ncRNA	0.0	0.0	0.5	0.0	0.0	1.5
Merged-chr13-54696302-2	chr13	54695802	54696802	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2342.0	NR_027396	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64241982-2	chr5	64241482	64242482	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	11625.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	51.5	112.0	84.5	52.0	113.0	85.5
Merged-chr17-74289215-2	chr17	74288715	74289715	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133771, intron 1 of 8)	intron (NM_133771, intron 1 of 8)	5648.0	NM_133771	76890.0	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding	1.0	3.0	0.0	0.0	0.0	1.5
Merged-chr17-69193307-2	chr17	69192807	69193807	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	RMER17C2|LTR|ERVK	33951.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31071954-2	chr6	31071454	31072454	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8861.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-52464612-1	chr18	52464112	52465112	+	583.5	f1_c57bl6.idr	Intergenic	Intergenic	-1081.0	NM_026040	67222.0	Mm.100617	NM_026040	ENSMUSG00000024528	Srfbp1	2810036K01Rik|p49/STRAP	serum response factor binding protein 1	protein-coding	7.5	2.0	3.5	19.0	7.0	8.5
Merged-chr6-52486058-2	chr6	52485558	52486558	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6393.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13387866-2	chr8	13387366	13388366	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009724, intron 5 of 6)	intron (NM_009724, intron 5 of 6)	8912.0	NM_009724	11945.0	Mm.154039	NM_009724	ENSMUSG00000031449	Atp4b	AV080843	ATPase, H+/K+ exchanging, beta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67666930-1	chr18	67666430	67667430	+	583.5	f1_balb.idr	3' UTR (NM_001127177, exon 9 of 9)	3' UTR (NM_001127177, exon 9 of 9)	25331.0	NM_134138	107047.0	Mm.150701	NM_134138	ENSMUSG00000024537	Psmg2	1700017I17Rik|AW545363|Clast3|Tnfsf5ip1	proteasome (prosome, macropain) assembly chaperone 2	protein-coding	0.5	2.5	5.0	0.5	2.0	0.0
Merged-chr9-119087411-2	chr9	119086899	119087899	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019676, intron 1 of 14)	MIRc|SINE|MIR	862.0	NM_001293648	18799.0	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding	0.0	0.0	0.0	0.0	1.5	0.0
Merged-chr19-4104912-2	chr19	4104412	4105412	+	583.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_075078, exon 6 of 24)	non-coding (NR_075078, exon 6 of 24)	4290.0	NM_008851	18739.0	Mm.1860	NM_008851	ENSMUSG00000024851	Pitpnm1	DRES9|Mpt-1|Nir-2|PITPnm 1|Pitpnm|R75447|Rd9|RdgB|RdgB1	phosphatidylinositol transfer protein, membrane-associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97115963-2	chr11	97115463	97116463	+	583.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019507)	promoter-TSS (NM_019507)	-632.0	NM_019507	57765.0	Mm.94519	NM_019507	ENSMUSG00000001444	Tbx21	TBT1|Tbet|Tblym	T-box 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25759065-2	chr7	25758565	25759565	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 19 of 19)	intron (NM_009465, intron 19 of 19)	-4306.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80560325-2	chr15	80559825	80560825	+	583.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163189, exon 1 of 6)	exon (NM_001163189, exon 1 of 6)	145.0	NM_001163189	383075.0	Mm.297626	NM_001163189	ENSMUSG00000050439	Enthd1	Gm1242|Gm86	ENTH domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123357456-2	chr4	123356956	123357956	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 90 of 92)	B3|SINE|B2	-14204.0	NM_007558	12163.0	Mm.439749	NM_007558	ENSMUSG00000032726	Bmp8a	Bmp7r1|OP-2|OP2	bone morphogenetic protein 8a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58927851-2	chr11	58927351	58928351	+	583.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_138678)	TTS (NM_138678)	9794.0	NM_138678	192194.0	Mm.22540	NM_138678	ENSMUSG00000020490	Btnl10	BUTR-1|Butr1	butyrophilin-like 10	protein-coding	98.5	343.5	192.0	107.5	232.0	154.5
Merged-chr16-20362493-2	chr16	20361993	20362993	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013790, intron 23 of 29)	intron (NM_013790, intron 23 of 29)	-37089.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-14389455-2	chr14	14388955	14389955	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	42960.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-63975429-2	chr3	63974930	63975930	+	583.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033300)	promoter-TSS (NM_001033300)	-713.0	NM_001033300	229363.0	Mm.331051	NM_001033300	ENSMUSG00000027823	Gmps	670032|AA591640|AI047208|Gm9479	guanine monophosphate synthetase	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr11-48785653-2	chr11	48785153	48786153	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-14707.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-113631781-2	chr3	113631281	113632281	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1632.0	NM_001038696	67225.0	Mm.316928	NM_026043	ENSMUSG00000027981	Rnpc3	2810441O16Rik|AI447568|C030014B17Rik	RNA-binding region (RNP1, RRM) containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20886271-2	chr9	20885771	20886771	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1904.0	NM_145610	235036.0	Mm.2930	NM_145610	ENSMUSG00000004100	Ppan	A230087P06Rik|SSF1	peter pan homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-143844629-1	chr2	143844129	143845129	+	583.5	f0_balb.idr	intron (NM_001291061, intron 4 of 7)	MLT1A1|LTR|ERVL-MaLR	18544.0	NM_009751	12075.0	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-48038480-2	chr4	48037980	48038980	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6825.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24610208-2	chr16	24609708	24610708	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	80894.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82533935-2	chr18	82533435	82534435	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025245, intron 3 of 3)	B4|SINE|B4	-20528.0	NM_001025258	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19938212-2	chr7	19937712	19938712	+	583.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027308, exon 5 of 5)	3' UTR (NM_027308, exon 5 of 5)	12531.0	NM_027308	70080.0	Mm.98583	NM_027308	ENSMUSG00000040498	Igsf23	2210010C17Rik	immunoglobulin superfamily, member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33833473-2	chr16	33832973	33833973	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 1 of 14)	(TTTTTG)n|Simple_repeat|Simple_repeat	3808.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151654257-2	chr1	151653757	151654757	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 5 of 13)	intron (NM_022018, intron 5 of 13)	82884.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66598575-2	chr9	66598075	66599075	+	583.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5460.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-38815727-3	chr9	38815194	38816194	+	583.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_146781, exon 1 of 1)	exon (NM_146781, exon 1 of 1)	286.0	NM_146781	258777.0	Mm.223208	NM_146781	ENSMUSG00000043911	Olfr922	MOR161-3	olfactory receptor 922	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-68317617-2	chr8	68317117	68318117	+	583.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_028182, intron 4 of 8)	intron (NM_028182, intron 4 of 8)	41089.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	1.5	4.5	5.0	1.0	1.0	6.0
Merged-chr5-130164618-2	chr5	130164156	130165156	+	583.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7163.0	NM_001199059	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-194991136-2	chr1	194990636	194991636	+	583.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14177.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121344223-2	chr5	121343723	121344723	+	583.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_181421, intron 59 of 75)	intron (NM_181421, intron 59 of 75)	41186.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85933369-4	chr1	85932888	85933888	+	583.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR48B|LTR|ERV1	4905.0	NR_037692	71141.0	Mm.314965	NR_037692	ENSMUSG00000026224	4933407L21Rik	-	RIKEN cDNA 4933407L21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-13990062-2	chr11	13989562	13990562	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2A|LINE|L1	188979.0	NR_131011	75280.0	Mm.108492	NR_131011	ENSMUSG00000085452	4930554G24Rik	-	RIKEN cDNA 4930554G24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-90464925-1	chr15	90464425	90465425	+	583.0	f1_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	111215.0	NR_155426	102640415.0	Mm.394352	NR_155426	ENSMUSG00000116204	Gm36480	-	predicted gene, 36480	ncRNA	10.0	3.5	0.0	10.0	4.0	3.5
Merged-chr4-149658934-2	chr4	149658434	149659434	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029837, intron 6 of 23)	intron (NM_001029837, intron 6 of 23)	-3367.0	NR_105990	102465983.0		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	0.0	0.0	0.5	2.0	0.0	0.0
Merged-chr7-30973273-2	chr7	30972773	30973773	+	583.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038860)	promoter-TSS (NR_038860)	196.0	NM_001164185	54135.0	Mm.4067	NM_017405	ENSMUSG00000001247	Lsr	ILDR3|Lisch7	lipolysis stimulated lipoprotein receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37851854-1	chr13	37851354	37852354	+	583.0	f0_balb.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	24461.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3578899-2	chr19	3578399	3579399	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3150.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	0.5	0.0	2.0	0.0	1.0	0.0
Merged-chr15-77533548-2	chr15	77533048	77534048	+	583.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175391)	promoter-TSS (NM_175391)	-233.0	NM_175391	108956.0	Mm.86391	NM_175391	ENSMUSG00000044309	Apol7c	2210421G13Rik	apolipoprotein L 7c	protein-coding	0.0	0.5	3.5	0.5	0.0	3.5
Merged-chr4-132364913-2	chr4	132364413	132365413	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161797, intron 9 of 12)	intron (NM_001161797, intron 9 of 12)	-11227.0	NR_003270	399101.0	Mm.486919	NR_002904	ENSMUSG00000085241	Snhg3	Rnu17d|U17HG	small nucleolar RNA host gene 3	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-9850286-1	chr1	9849786	9850786	+	583.0	f0_c57.idr	intron (NM_001037759, intron 1 of 16)	L2a|LINE|L2	2005.0	NM_001037759	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	0.0	0.5	4.0	3.0	4.0	4.0
Merged-chr5-76075568-1	chr5	76075068	76076068	+	583.0	f0_balb.idr	Intergenic	Intergenic	-64705.0	NM_020611	57357.0	Mm.289446	NM_020611	ENSMUSG00000029233	Srd5a3	1110025P14Rik|A430076C09|AV364670|AW987574|D730040M03Rik|H5ar|S5AR 3|Srd5a2l	steroid 5 alpha-reductase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27917530-2	chr17	27917031	27918031	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	8225.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	0.0	3.0	0.5	0.0	4.0	1.0
Merged-chr6-108664988-1	chr6	108664488	108665488	+	583.0	f0_balb.idr	exon (NM_011498, exon 5 of 5)	exon (NM_011498, exon 5 of 5)	-4054.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0.0	10.0	6.0	0.0	0.0	1.5
Merged-chr7-116335430-1	chr7	116334930	116335930	+	583.0	f1_balb.idr	Intergenic	Intergenic	-1240.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	5.0	1.5	1.5	9.5	6.5	2.0
Merged-chr3-119931958-1	chr3	119931458	119932458	+	583.0	f1_balb.idr	Intergenic	L1_Mus3|LINE|L1	-148570.0	NM_019550	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	0.0	2.0	3.0	3.5	0.0	0.0
Merged-chr6-129404470-2	chr6	129403970	129404970	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019985, intron 5 of 5)	L1_Mus4|LINE|L1	-4392.0	NM_001205363	232414.0	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21072807-2	chr9	21072307	21073307	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039824, intron 3 of 4)	B1F|SINE|Alu	707.0	NM_001039824	68165.0	Mm.490294	NM_001039824	ENSMUSG00000079677	Fdx1l	B230118G17Rik|Fdx2	ferredoxin 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35751813-1	chr17	35751313	35752313	+	583.0	f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-20637.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	27.0	42.5	47.5	0.0	22.5	17.0
Merged-chr1-88134708-3	chr1	88134202	88135202	+	583.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145079)	promoter-TSS (NM_145079)	-107.0	NM_145079	94284.0	Mm.300095	NM_145079	ENSMUSG00000054545	Ugt1a6a	UDPGT|UDPGT 1-6|UGT1-06|UGT1.6|Ugt1a6|Ugt1a7	UDP glucuronosyltransferase 1 family, polypeptide A6A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102576278-2	chr4	102575778	102576778	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	6218.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	6.0	16.0	11.0	3.0	10.5	18.0
Merged-chr2-129623459-1	chr2	129622959	129623959	+	583.0	f1_c57bl6.idr	intron (NM_001355158, intron 7 of 8)	intron (NM_001355158, intron 7 of 8)	27997.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	12.0	6.0	5.5	1.5	8.5	3.5
Merged-chr14-21891849-2	chr14	21891349	21892349	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42939.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88537436-1	chr5	88536936	88537936	+	583.0	f1_balb.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-9539.0	NM_152839	16069.0	Mm.1192	NM_152839	ENSMUSG00000067149	Jchain	9530090F24Rik|AI323815|Igj|Jch	immunoglobulin joining chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39201518-2	chr18	39201018	39202018	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 11 of 21)	intron (NM_001361073, intron 11 of 21)	208373.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0.0	2.0	0.0	0.0	0.0	0.0
Merged-chr15-90422384-2	chr15	90421884	90422884	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68674.0	NR_155426	102640415.0	Mm.394352	NR_155426	ENSMUSG00000116204	Gm36480	-	predicted gene, 36480	ncRNA	2.0	1.0	3.5	2.0	0.0	0.0
Merged-chr5-137297486-1	chr5	137296986	137297986	+	583.0	f1_c57bl6.idr	promoter-TSS (NR_106003)	promoter-TSS (NR_106003)	-798.0	NR_106003	102465627.0		NR_106003	ENSMUSG00000098624	Mir7036	Gm27973|mmu-mir-7036|mmu-mir-7036a	microRNA 7036	ncRNA	0.0	0.5	3.0	1.0	1.0	1.0
Merged-chr1-120077981-2	chr1	120077481	120078481	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4201.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	2.0	2.0	2.5	0.0	1.0	0.0
Merged-chr2-30391571-1	chr2	30391071	30392071	+	583.0	f1_c57bl6.idr	promoter-TSS (NM_001290508)	promoter-TSS (NM_001290508)	-683.0	NM_020329	57170.0	Mm.285167	NM_020329	ENSMUSG00000026856	Dolpp1	0610011H20Rik|AB030189|LSFR2	dolichyl pyrophosphate phosphatase 1	protein-coding	1.5	0.0	2.5	2.5	6.0	0.0
Merged-chr9-75557783-1	chr9	75557283	75558283	+	583.0	f1_c57bl6.idr	intron (NM_001357828, intron 1 of 10)	intron (NM_001357828, intron 1 of 10)	1874.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	0.0	2.0	4.0	0.5	6.5	1.5
Merged-chr12-72280965-1	chr12	72280465	72281465	+	583.0	f1_c57bl6.idr	intron (NM_001286448, intron 1 of 6)	B4|SINE|B4	-44238.0	NM_001007596	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0.5	0.0	1.5	4.5	0.0	0.0
Merged-chr7-15957464-2	chr7	15956964	15957964	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153068, intron 4 of 5)	CpG	10071.0	NM_153068	259300.0	Mm.138215	NM_153068	ENSMUSG00000074364	Ehd2	BC027084|C130052H20Rik	EH-domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-6435047-1	chr18	6434547	6435547	+	583.0	f1_balb.idr	TTS (NM_027497)	TTS (NM_027497)	55599.0	NR_035446	100316773.0		NR_035446	ENSMUSG00000084514	Mir1893	Mirn1893|mmu-mir-1893	microRNA 1893	ncRNA	0.0	0.0	1.0	0.0	9.5	1.5
Merged-chr15-83038249-3	chr15	83037741	83038741	+	583.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4844.0	NM_001271411	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-16314356-2	chr9	16313856	16314856	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 1 of 24)	MTC|LTR|ERVL-MaLR	63875.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46628082-1	chr8	46627582	46628582	+	583.0	f0_balb.idr	intron (NM_001284409, intron 1 of 6)	intron (NM_001284409, intron 1 of 6)	10791.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123750813-2	chr5	123750313	123751313	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042421, intron 1 of 63)	intron (NM_001042421, intron 1 of 63)	1087.0	NM_001042421	208628.0	Mm.441089	NM_001042421	ENSMUSG00000029414	Kntc1	D330012D13|jgl	kinetochore associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107006569-1	chr11	107006069	107007069	+	583.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-7044.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	0.0	9.0	0.0	0.0	0.0	0.0
Merged-chr5-32809484-1	chr5	32808984	32809984	+	583.0	f1_balb.idr	intron (NM_194340, intron 9 of 10)	PB1|SINE|Alu	-23858.0	NM_177298	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0.0	3.5	0.0	5.5	0.0	1.0
Merged-chr19-3594105-1	chr19	3593605	3594605	+	583.0	f1_c57bl6.idr	intron (NM_008513, intron 18 of 22)	intron (NM_008513, intron 18 of 22)	-18356.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	0.0	2.0	3.5	0.0	4.0	1.5
Merged-chr4-129541976-1	chr4	129541476	129542476	+	583.0	f1_balb.idr	intron (NM_008228, intron 1 of 13)	intron (NM_008228, intron 1 of 13)	670.0	NM_008228	433759.0	Mm.202504	NM_008228	ENSMUSG00000028800	Hdac1	HD1|Hdac1-ps|MommeD5|RPD3	histone deacetylase 1	protein-coding	11.0	22.5	19.0	25.0	16.0	14.5
Merged-chr8-84689799-1	chr8	84689299	84690299	+	583.0	f1_c57bl6.idr	exon (NM_001164560, exon 2 of 17)	exon (NM_001164560, exon 2 of 17)	552.0	NM_198020	212528.0	Mm.275720	NM_198020	ENSMUSG00000001909	Trmt1	6720406L13Rik|6720477L24|D8Ertd812e	tRNA methyltransferase 1	protein-coding	1.5	5.5	4.0	9.5	5.0	5.0
Merged-chr9-60994390-2	chr9	60993890	60994890	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22679.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91967163-1	chr1	91966663	91967663	+	583.0	f1_c57bl6.idr	intron (NM_207225, intron 16 of 26)	intron (NM_207225, intron 16 of 26)	165702.0	NM_007855	13345.0	Mm.9474	NM_007855	ENSMUSG00000007805	Twist2	Dermo1|bHLHa39	twist basic helix-loop-helix transcription factor 2	protein-coding	4.5	0.0	3.0	0.0	0.0	0.0
Merged-chr11-97556650-2	chr11	97556150	97557150	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 1 of 19)	intron (NM_018873, intron 1 of 19)	18476.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-101782934-1	chr2	101782434	101783434	+	583.0	f1_balb.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	14773.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	24.0	33.0	33.5	11.0	43.0	18.5
Merged-chr18-79288961-1	chr18	79288461	79289461	+	583.0	f0_balb.idr	Intergenic	Intergenic	-179570.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71729386-2	chr8	71728886	71729886	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3705.0	NM_028715	74015.0	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61215979-1	chr18	61215479	61216479	+	583.0	f1_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4383.0	NM_007885	13521.0	Mm.24803	NM_007885	ENSMUSG00000034320	Slc26a2	Dtd|ST-OB	solute carrier family 26 (sulfate transporter), member 2	protein-coding	28.5	14.0	7.5	7.5	27.0	18.0
Merged-chr3-98072309-2	chr3	98071809	98072809	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 3 of 33)	intron (NM_010928, intron 3 of 33)	58771.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54755600-1	chr14	54755100	54756100	+	583.0	f1_c57bl6.idr	intron (NM_016972, intron 3 of 10)	B1_Mus2|SINE|Alu	26286.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	133.0	319.0	208.5	54.0	191.0	105.5
Merged-chr5-90689205-2	chr5	90688705	90689705	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48678.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	1.0	1.5	0.0	1.0	1.5	0.0
Merged-chr15-31331152-2	chr15	31330652	31331652	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027496, intron 1 of 3)	RSINE1|SINE|B4	36607.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-66716044-2	chr13	66715544	66716544	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	189306.0	NM_026219	67530.0	Mm.379136	NM_026219	ENSMUSG00000021520	Uqcrb	2210415M14Rik|QP-C|QPC|UQBC|UQBP|UQPC	ubiquinol-cytochrome c reductase binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91525411-2	chr16	91524911	91525911	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	2133.0	NR_105786	102465190.0		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	1.5	14.0	0.5	1.5	12.0	3.5
Merged-chr1-181127296-3	chr1	181126795	181127795	+	583.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026171, intron 9 of 22)	RSINE1|SINE|B4	16909.0	NM_026171	67459.0	Mm.263464	NM_026171	ENSMUSG00000026516	Nvl	1200009I24Rik	nuclear VCP-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70511354-2	chr11	70510854	70511854	+	583.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029360)	TTS (NM_029360)	3262.0	NM_001013607	327956.0	Mm.244514	NM_001013607	ENSMUSG00000020830	Vmo1	Gm741	vitelline membrane outer layer 1 homolog (chicken)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-106498352-1	chr3	106497852	106498852	+	583.0	f0_c57.idr	intron (NM_001093754, intron 8 of 11)	intron (NM_001093754, intron 8 of 11)	12312.0	NM_028110	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	5.5	11.5	5.0	1.5	9.0	6.5
Merged-chr9-64012019-2	chr9	64011519	64012519	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 2 of 3)	intron (NM_008542, intron 2 of 3)	10040.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-14277249-2	chr9	14276749	14277749	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030261, intron 1 of 9)	intron (NM_030261, intron 1 of 9)	948.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-36578781-1	chr13	36578281	36579281	+	583.0	f1_balb.idr	Intergenic	CpG	155696.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	10.5	12.5	1.0	0.0	0.0	1.0
Merged-chr19-5426010-2	chr19	5425510	5426510	+	583.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001256515, exon 2 of 2)	exon (NM_001256515, exon 2 of 2)	866.0	NM_001256515	107242.0	Mm.329658	NM_134149	ENSMUSG00000047423	AI837181	Bles03|N28173	expressed sequence AI837181	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16054671-2	chr7	16054171	16055171	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-17174.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	1.0	0.5	3.5	0.0	1.0	8.0
Merged-chr8-119748172-2	chr8	119747672	119748672	+	583.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026922, exon 17 of 27)	exon (NM_026922, exon 17 of 27)	30244.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22970816-2	chr11	22970316	22971316	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144514, intron 1 of 2)	intron (NM_144514, intron 1 of 2)	-1189.0	NM_011663	22183.0	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr14-51278219-1	chr14	51277719	51278719	+	583.0	f1_balb.idr	Intergenic	Intergenic	-22107.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	2.0	12.0	10.0	22.5	20.5	25.0
Merged-chr18-5186496-2	chr18	5185996	5186996	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20765.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99279729-1	chr10	99279229	99280229	+	583.0	f0_balb.idr	Intergenic	Intergenic	16498.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191732844-2	chr1	191732344	191733344	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134829, intron 2 of 7)	L1MB7|LINE|L1	14449.0	NM_001134829	226856.0	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21785198-2	chr16	21784698	21785698	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023737, intron 1 of 6)	intron (NM_023737, intron 1 of 6)	2636.0	NM_023737	74147.0	Mm.28100	NM_023737	ENSMUSG00000022853	Ehhadh	1300002P22Rik|HD|L-PBE|LBFP|LBP|MFP|MFP1|PBFE	enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106365846-1	chr9	106365346	106366346	+	583.0	f1_balb.idr	Intergenic	RMER15|LTR|ERVL	-2786.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	5.0	16.0	15.0	2.5	17.5	14.0
Merged-chr15-62223604-1	chr15	62223104	62224104	+	583.0	f0_balb.idr	intron (NR_132746, intron 3 of 6)	intron (NR_132746, intron 3 of 6)	-4153.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	5.0	0.0	7.0	4.0	7.0	4.5
Merged-chr1-51912553-2	chr1	51912053	51913053	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010863, intron 1 of 29)	intron (NM_010863, intron 1 of 29)	3425.0	NM_001161817	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-85829436-1	chr10	85828936	85829936	+	583.0	f0_balb.idr	Intergenic	CpG	-42395.0	NM_133993	103136.0	Mm.18834	NM_133993	ENSMUSG00000001785	Pwp1	2310058A11Rik|2610205J09Rik|AI098170|AL022879|AV083409|AW550690	PWP1 homolog, endonuclein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87312624-1	chr17	87312124	87313124	+	583.0	f1_balb.idr	intron (NM_028639, intron 5 of 19)	intron (NM_028639, intron 5 of 19)	29738.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	15.0	10.5	19.5	3.5	23.0	24.5
Merged-chr11-75576868-2	chr11	75576368	75577368	+	583.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173388, exon 14 of 14)	3' UTR (NM_173388, exon 14 of 14)	-11211.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46073864-2	chr19	46073364	46074364	+	583.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081214)	TTS (NM_001081214)	-1983.0	NM_001039352	70769.0	Mm.402190	NM_053086	ENSMUSG00000015176	Nolc1	NOPP130|NOPP140|P130	nucleolar and coiled-body phosphoprotein 1	protein-coding	4.5	3.0	0.0	0.0	0.0	1.0
Merged-chr7-79882526-2	chr7	79882026	79883026	+	583.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009682, exon 5 of 6)	exon (NM_009682, exon 5 of 6)	-34316.0	NM_008486	16790.0	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116706781-2	chr4	116706281	116707281	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025962, intron 1 of 3)	intron (NM_025962, intron 1 of 3)	1604.0	NM_025962	67096.0	Mm.252785	NM_025962	ENSMUSG00000028690	Mmachc	1810037K07Rik|CblC	methylmalonic aciduria cblC type, with homocystinuria	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19695895-2	chr7	19695395	19696395	+	583.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009696)	TTS (NM_009696)	2503.0	NM_001305819	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-23079208-2	chr8	23078708	23079708	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_102385, intron 2 of 45)	intron (NR_102385, intron 2 of 45)	20949.0	NR_102385	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-7400114-1	chr17	7399614	7400614	+	583.0	f1_c57bl6.idr	Intergenic	RMER12B|LTR|ERVK	-14809.0	NM_001142539	667055.0	Mm.327371	NM_001142539	ENSMUSG00000056133	Gm9992	-	predicted gene 9992	protein-coding	0.0	3.5	5.5	0.0	0.0	0.0
Merged-chr17-3566883-2	chr17	3566383	3567383	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D1|LTR|ERVK	9059.0	NR_045302	68230.0	Mm.431352	NR_045302		1700102H20Rik	-	RIKEN cDNA 1700102H20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55398097-1	chr1	55397597	55398597	+	583.0	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7849.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	0.0	1.5	1.5	4.0	1.5	0.0
Merged-chr7-35233386-2	chr7	35232886	35233886	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18041.0	NM_001024707	435965.0	Mm.333783	NM_001024707	ENSMUSG00000001802	Lrp3	-	low density lipoprotein receptor-related protein 3	protein-coding	0.0	2.0	0.0	0.0	1.0	3.0
Merged-chr5-142457861-2	chr5	142457361	142458361	+	583.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_199068, exon 9 of 9)	3' UTR (NM_199068, exon 9 of 9)	-6070.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79970383-2	chr10	79969883	79970883	+	583.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130455)	promoter-TSS (NM_130455)	-341.0	NM_130455	170483.0	Mm.391566	NM_130455	ENSMUSG00000035745	Grin3b	GluN3B|NR3B	glutamate receptor, ionotropic, NMDA3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55111907-2	chr14	55111407	55112407	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177049, intron 3 of 5)	intron (NM_177049, intron 3 of 5)	5028.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128749766-2	chr10	128749266	128750266	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170869, intron 1 of 2)	intron (NM_001170869, intron 1 of 2)	1311.0	NM_001253704	78428.0	Mm.27358	NM_030100	ENSMUSG00000064030	Pym1	A030010B05Rik|Pym|Wibg	PYM homolog 1, exon junction complex associated factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122316823-2	chr3	122316323	122317323	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23120.0	NR_030439	791077.0		NR_030439	ENSMUSG00000076456	Mir760	Mirn760|mir-760|mmu-mir-760	microRNA 760	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127497858-1	chr3	127497358	127498358	+	583.0	f1_balb.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	1257.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	9.0	7.5	8.5	0.0	7.0	0.0
Merged-chr19-4609964-2	chr19	4609464	4610464	+	583.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008797, exon 10 of 20)	exon (NM_008797, exon 10 of 20)	5703.0	NM_153388	225875.0	Mm.329675	NM_153388	ENSMUSG00000045045	Lrfn4	BC023156|Salm3	leucine rich repeat and fibronectin type III domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83023816-2	chr15	83023312	83024312	+	583.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271414)	promoter-TSS (NM_001271414)	-674.0	NM_001271414	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	1.0	17.5	4.0	0.0	6.0	4.0
Merged-chr11-69982536-1	chr11	69982036	69983036	+	583.0	f0_balb.idr	intron (NM_026017, intron 1 of 7)	intron (NM_026017, intron 1 of 7)	-1301.0	NM_018740	54351.0	Mm.13430	NM_018740	ENSMUSG00000018565	Elp5	Derp6|Rai12	elongator acetyltransferase complex subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116172476-1	chr9	116171976	116172976	+	583.0	f0_balb.idr	intron (NM_009371, intron 1 of 7)	B4A|SINE|B4	2887.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	19.5	18.0	14.5	8.0	27.0	21.5
Merged-chr14-103962516-1	chr14	103962016	103963016	+	583.0	f0_balb.idr	Intergenic	Intergenic	64626.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-65471472-2	chr16	65470963	65471963	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49166.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	0.5	7.5	5.0	6.0	1.5	1.0
Merged-chr1-74153933-2	chr1	74153433	74154433	+	583.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009909)	promoter-TSS (NM_009909)	-61.0	NM_009909	12765.0	Mm.234466	NM_009909	ENSMUSG00000026180	Cxcr2	CD128|CDw128|Cmkar2|Gpcr16|IL-8Rh|IL-8rb|IL8RA|Il8rb|mIL-8RH	chemokine (C-X-C motif) receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98719911-1	chr7	98719411	98720411	+	583.0	f1_balb.idr	Intergenic	B3A|SINE|B2	16664.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	5.0	4.5	2.0	1.5	6.5	3.5
Merged-chr7-106236464-3	chr7	106235914	106236914	+	583.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21074.0	NM_029000	74558.0	Mm.458429	NM_029000	ENSMUSG00000045868	Gvin1	9130002C22Rik|9830104F22Rik|Iigs1|VLIG|VLIG-1	GTPase, very large interferon inducible 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50975137-1	chr17	50974637	50975637	+	583.0	f0_balb.idr	intron (NM_028162, intron 4 of 21)	L1_Mus4|LINE|L1	184241.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-12957686-2	chr7	12957178	12958178	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8160.0	NM_001362140	243834.0	Mm.133086	NM_178732	ENSMUSG00000004500	Zfp324	A930002M05|D430030K24Rik|ZF5128	zinc finger protein 324	protein-coding	13.5	0.0	2.0	0.0	3.5	0.0
Merged-chr8-69973146-2	chr8	69972646	69973646	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 1 of 12)	intron (NM_001286450, intron 1 of 12)	1237.0	NM_001113346	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	0.0	0.0	3.0	0.0	6.5	6.0
Merged-chr10-88335036-2	chr10	88334536	88335536	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 4 of 6)	intron (NM_027878, intron 4 of 6)	22039.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8905603-2	chr3	8905103	8906103	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025434, intron 1 of 2)	ORR1A4-int|LTR|ERVL-MaLR	18254.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65198151-2	chr5	65197651	65198651	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1545.0	NM_001359880	213081.0	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding	1.5	2.5	0.0	1.5	0.0	0.0
Merged-chr15-51990621-1	chr15	51990121	51991121	+	583.0	f0_balb.idr	intron (NM_009009, intron 1 of 13)	intron (NM_009009, intron 1 of 13)	1139.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44377556-2	chr11	44377042	44378042	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22521.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	35.5	116.0	43.0	47.5	135.0	58.5
Merged-chr8-117332769-2	chr8	117332269	117333269	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-16401.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32815006-1	chr16	32814506	32815506	+	583.0	f1_balb.idr	Intergenic	Intergenic	-4560.0	NM_001256309	381043.0	Mm.303864	NM_001256309	ENSMUSG00000094430	Smbd1	Gm1743|Gm933	somatomedin B domain containing 1	protein-coding	19.5	53.0	25.5	21.5	38.0	28.0
Merged-chr11-120064652-1	chr11	120064152	120065152	+	583.0	f1_c57bl6.idr	exon (NM_009734, exon 26 of 26)	exon (NM_009734, exon 26 of 26)	-17507.0	NM_007377	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	0.0	2.5	3.5	0.0	0.0	5.0
Merged-chr9-115708653-1	chr9	115708153	115709153	+	583.0	f1_c57bl6.idr	Intergenic	MER89|LTR|ERV1	-200802.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	0.0	3.0	1.5	0.0	1.5	1.5
Merged-chr2-30548040-2	chr2	30547540	30548540	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47004.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79775338-2	chr10	79774838	79775838	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-1936.0	NM_031380	83554.0	Mm.251710	NM_031380	ENSMUSG00000020325	Fstl3	E030038F23Rik|Flrg	follistatin-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72348986-1	chr8	72348486	72349486	+	583.0	f1_balb.idr	intron (NM_007944, intron 22 of 23)	intron (NM_007944, intron 22 of 23)	29924.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	4.5	5.0	1.0	0.0	3.0	3.5
Merged-chr7-134378622-2	chr7	134378122	134379122	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1791.0	NM_001081331	71007.0	Mm.334285	NM_001081331	ENSMUSG00000030994	D7Ertd443e	4933400E14Rik|FATS|Gm497	DNA segment, Chr 7, ERATO Doi 443, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr4-87762506-2	chr4	87762006	87763006	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43817.0	NM_001286158	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30233166-2	chr5	30232666	30233666	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027652, intron 1 of 9)	intron (NM_027652, intron 1 of 9)	585.0	NR_137634	28042.0	Mm.168854	NM_027652	ENSMUSG00000075703	Selenoi	4933402G07Rik|AI448296|AI452230|C79563|D5Wsu178e|Ept1|SELI|mKIAA1724	selenoprotein I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57071322-1	chr9	57070822	57071822	+	583.0	f0_balb.idr	promoter-TSS (NM_001110351)	promoter-TSS (NM_001110351)	644.0	NR_045886	100038566.0	Mm.361900	NR_045886		Gm10658	-	predicted gene 10658	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-52951698-2	chr1	52951198	52952198	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144953, intron 1 of 1)	intron (NM_144953, intron 1 of 1)	1142.0	NM_144953	67080.0	Mm.236287	NM_144953	ENSMUSG00000043629	1700019D03Rik	2410136C24Rik|AA410151|smAKAP	RIKEN cDNA 1700019D03 gene	protein-coding	0.0	0.0	2.0	0.0	0.0	2.0
Merged-chr1-57436530-1	chr1	57436030	57437030	+	583.0	f0_balb.idr	Intergenic	Intergenic	-29856.0	NM_001302963	68736.0	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	0.0	0.0	8.0	1.0	3.0	6.0
Merged-chr1-54813914-1	chr1	54813414	54814414	+	583.0	f1_balb.idr	intron (NM_001081433, intron 2 of 27)	intron (NM_001081433, intron 2 of 27)	112473.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0.5	6.0	1.5	6.0	5.5	2.5
Merged-chr14-47362896-1	chr14	47362396	47363396	+	583.0	f1_c57bl6.idr	Intergenic	Intergenic	-10964.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	163.0	206.0	192.0	2.5	28.5	17.0
Merged-chr12-85129811-3	chr12	85129305	85130305	+	583.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030225, exon 12 of 15)	exon (NM_030225, exon 12 of 15)	18972.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61766952-2	chr14	61766433	61767433	+	583.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84560.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.0	22.0	8.0	10.0	5.0	1.0
Merged-chr1-170642369-2	chr1	170641869	170642869	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2163.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-97024984-1	chr5	97024484	97025484	+	583.0	f1_c57bl6.idr	intron (NM_080708, intron 1 of 15)	intron (NM_080708, intron 1 of 15)	27295.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	1.5	7.0	0.5	2.5	2.5	1.5
Merged-chr2-49448411-2	chr2	49447911	49448911	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3075.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120067417-1	chr10	120066917	120067917	+	583.0	f1_balb.idr	intron (NM_001358809, intron 22 of 23)	MTD|LTR|ERVL-MaLR	45548.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	0.0	3.5	0.0	0.0	7.5	2.0
Merged-chr8-105569758-2	chr8	105569258	105570258	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271806, intron 1 of 4)	B2_Mm2|SINE|B2	-1457.0	NM_007427	11604.0	Mm.441696	NM_007427	ENSMUSG00000005705	Agrp	Agrt|Art	agouti related neuropeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99440380-1	chr7	99439880	99440880	+	583.0	f0_balb.idr	intron (NM_201352, intron 5 of 17)	intron (NM_201352, intron 5 of 17)	-25624.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	1.5	2.5	2.0	0.0	3.0	0.5
Merged-chr11-22784671-3	chr11	22784193	22785193	+	582.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75042.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101238757-2	chr15	101238257	101239257	+	582.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13571.0	NR_045328	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111931482-2	chr12	111930982	111931982	+	582.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13000.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47526440-2	chr17	47525940	47526940	+	582.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	B1_Mus2|SINE|Alu	21389.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-84349159-2	chr13	84348653	84349653	+	582.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	126857.0	NM_175187	72745.0	Mm.295063	NM_175187	ENSMUSG00000035762	Tmem161b	2810446P07Rik|AI843389	transmembrane protein 161B	protein-coding	6.5	0.0	0.0	2.5	3.0	0.5
Merged-chr16-4736444-3	chr16	4735948	4736948	+	582.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136066, intron 1 of 5)	intron (NM_001136066, intron 1 of 5)	-5165.0	NM_010443	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76944897-3	chr12	76944405	76945405	+	582.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361663, intron 3 of 4)	intron (NM_001361663, intron 3 of 4)	17343.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121637008-3	chr3	121636518	121637518	+	582.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_036457)	TTS (NR_036457)	6467.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-80902870-3	chr13	80902374	80903374	+	582.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16779.0	NR_153411	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19258761-3	chr3	19258253	19259253	+	582.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122759, intron 2 of 12)	intron (NM_001122759, intron 2 of 12)	6255.0	NM_008802	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-42826899-2	chr13	42826399	42827399	+	582.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005740, intron 1 of 12)	intron (NM_001005740, intron 1 of 12)	-39348.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49204513-2	chr13	49204013	49205013	+	582.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026738, intron 3 of 5)	intron (NM_026738, intron 3 of 5)	11513.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107773017-2	chr3	107772517	107773517	+	582.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12548.0	NM_001113529	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-25089752-3	chr5	25089259	25090259	+	582.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 1 of 15)	intron (NM_145401, intron 1 of 15)	10883.0	NM_145401	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71728656-2	chr8	71728198	71729198	+	582.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3017.0	NM_028715	74015.0	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	1.0	0.0	2.0	0.0	2.0	2.0
Merged-chr17-31093578-3	chr17	31093079	31094079	+	582.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 3 of 14)	intron (NM_009593, intron 3 of 14)	35885.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	6.0	13.5	13.5	11.5	12.0	11.5
Merged-chr10-77980291-2	chr10	77979791	77980791	+	582.516663	f1_balb.idr|f1_c57bl6.idr	intron (NM_026431, intron 2 of 6)	intron (NM_026431, intron 2 of 6)	1641.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152518867-2	chr1	152518367	152519367	+	582.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001346119, exon 18 of 18)	3' UTR (NM_001346119, exon 18 of 18)	106350.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21414057-2	chr10	21413557	21414557	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36757.0	NM_178713	237320.0	Mm.90181	NM_178713	ENSMUSG00000037542	Aldh8a1	Raldh4	aldehyde dehydrogenase 8 family, member A1	protein-coding	0.0	5.0	0.0	0.0	0.0	0.0
Merged-chr15-80896843-2	chr15	80896343	80897343	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177124, intron 11 of 21)	intron (NM_177124, intron 11 of 21)	-43196.0	NR_039573	100628612.0		NR_039573	ENSMUSG00000092868	Mir5113	mir-5113|mmu-mir-5113|mu-mir-5113	microRNA 5113	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44507507-2	chr9	44507007	44508007	+	582.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_030256, exon 7 of 9)	exon (NM_030256, exon 7 of 9)	8371.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47770316-2	chr6	47769816	47770816	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12B|LTR|ERVK	-17391.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103539600-2	chr14	103539100	103540100	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022886, intron 5 of 30)	intron (NM_022886, intron 5 of 30)	26259.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-119345924-2	chr6	119345424	119346424	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033382, intron 34 of 37)	intron (NM_001033382, intron 34 of 37)	-15158.0	NM_172492	211187.0	Mm.121498	NM_172492	ENSMUSG00000055003	Lrtm2	A230084J22|AI841794	leucine-rich repeats and transmembrane domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3644168-2	chr12	3643668	3644668	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 7 of 17)	intron (NM_001162465, intron 7 of 17)	71184.0	NM_007886	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24804581-2	chr13	24804081	24805081	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024473, intron 1 of 4)	intron (NM_024473, intron 1 of 4)	2924.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-109231478-1	chr2	109230978	109231978	+	582.5	f0_balb.idr	intron (NM_029790, intron 2 of 5)	intron (NM_029790, intron 2 of 5)	46812.0	NM_029790	76894.0	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30974586-2	chr13	30974086	30975086	+	582.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025588)	promoter-TSS (NM_025588)	-539.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4246754-2	chr8	4246254	4247254	+	582.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164172, exon 12 of 12)	3' UTR (NM_001164172, exon 12 of 12)	-1460.0	NM_001195258	100044509.0	Mm.439193	NM_001195258	ENSMUSG00000089736	Tgfbr3l	Gm14378	transforming growth factor, beta receptor III-like	protein-coding	7.0	0.0	0.0	0.0	3.5	0.0
Merged-chr17-49432083-2	chr17	49431583	49432583	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020042, intron 1 of 10)	intron (NM_020042, intron 1 of 10)	3719.0	NM_020042	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	0.0	5.5	5.5	0.0	4.0	2.5
Merged-chr3-143598234-2	chr3	143597734	143598734	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	113909.0	NR_040405	621809.0	Mm.360134	NR_040405	ENSMUSG00000105279	Gm6260	EG621809	predicted gene 6260	ncRNA	0.0	2.0	0.0	0.0	2.0	3.0
Merged-chr10-99988902-2	chr10	99988402	99989402	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26919.0	NM_001347156	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-88879399-2	chr12	88878899	88879899	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198587, intron 3 of 19)	intron (NM_001198587, intron 3 of 19)	-73991.0	NM_172544	18191.0	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25330151-2	chr7	25329651	25330651	+	582.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001160400, exon 6 of 41)	exon (NM_001160400, exon 6 of 41)	12987.0	NM_001160400	269878.0	Mm.38527	NM_001160400	ENSMUSG00000045039	Megf8	AW049492|Egfl4|b2b1702.2Clo|b2b1702Clo|b2b288Clo|m687Ddg|mKIAA0817	multiple EGF-like-domains 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-112600396-2	chr2	112599896	112600896	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_149741, intron 1 of 4)	intron (NR_149741, intron 1 of 4)	-18021.0	NM_001355631	74268.0	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117380693-2	chr10	117380193	117381193	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3720.0	NM_001310609	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	1.0	1.5	8.0	0.0	1.0	3.5
Merged-chr2-118029298-2	chr2	118028798	118029798	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 7 of 9)	intron (NR_126479, intron 7 of 9)	81904.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	1.0	3.0	1.0	0.5	2.0	1.0
Merged-chr19-6874392-2	chr19	6873892	6874892	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-16181.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-79193868-2	chr16	79193368	79194368	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-102771.0	NM_178855	19146.0	Mm.5184	NM_008941	ENSMUSG00000022857	Tmprss15	Entk|Prss7	transmembrane protease, serine 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-90490150-1	chr6	90489650	90490650	+	582.5	f0_balb.idr	Intergenic	Intergenic	27574.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-12423608-2	chr4	12423108	12424108	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-251593.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35046160-2	chr17	35045660	35046660	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013600, intron 1 of 23)	intron (NM_013600, intron 1 of 23)	462.0	NM_013600	17687.0	Mm.24192	NM_013600	ENSMUSG00000007035	Msh5	Mut5	mutS homolog 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-48028068-2	chr2	48027568	48028568	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-786041.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80289396-2	chr17	80288896	80289896	+	582.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194269)	promoter-TSS (NM_194269)	-816.0	NM_194269	378462.0	Mm.45208	NM_194269	ENSMUSG00000045257	Morn2	Mopt	MORN repeat containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-83896376-2	chr3	83895876	83896876	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54768.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85813877-2	chr12	85813377	85814377	+	582.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145447)	TTS (NM_145447)	11016.0	NM_001360451	58520.0	Mm.143795	NM_021446	ENSMUSG00000021252	Erg28	0610007P14Rik|1190004E09Rik|AU019315|C77855|ORF11	ergosterol biosynthesis 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16108735-2	chr7	16108235	16109235	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025898, intron 2 of 10)	intron (NM_025898, intron 2 of 10)	10155.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr2-3425952-2	chr2	3425452	3426452	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302674, intron 2 of 13)	B3|SINE|B2	1821.0	NM_001302684	227525.0	Mm.23483	NM_146114	ENSMUSG00000026648	Dclre1c	9930121L06Rik|AI661365|Art|Snm1l	DNA cross-link repair 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-84520956-2	chr11	84520456	84521456	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008498, intron 3 of 4)	intron (NM_008498, intron 3 of 4)	4578.0	NM_008498	16869.0	Mm.4965	NM_008498	ENSMUSG00000018698	Lhx1	Lim1	LIM homeobox protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147726497-2	chr5	147725997	147726997	+	582.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010228)	promoter-TSS (NM_010228)	-509.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137338651-1	chr4	137338151	137339151	+	582.5	f0_balb.idr	intron (NM_009861, intron 1 of 5)	intron (NM_009861, intron 1 of 5)	19108.0	NM_009861	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	14.0	28.5	24.5	4.5	21.5	17.0
Merged-chr10-96400946-2	chr10	96400446	96401446	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	174739.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93541823-2	chr10	93541323	93542323	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175488, intron 1 of 15)	(GA)n|Simple_repeat|Simple_repeat	1191.0	NM_175488	237465.0	Mm.477086	NM_175488	ENSMUSG00000036168	Ccdc38	4933417K05Rik	coiled-coil domain containing 38	protein-coding	13.5	4.5	10.0	3.0	0.0	0.5
Merged-chr7-100122362-2	chr7	100121862	100122862	+	582.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133692)	promoter-TSS (NM_133692)	-862.0	NM_133692	67967.0	Mm.37562	NM_133692	ENSMUSG00000030726	Pold3	2410142G14Rik|C85233|P66|P68	polymerase (DNA-directed), delta 3, accessory subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32904436-2	chr19	32903936	32904936	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146859.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	2.5	9.0	12.5	2.0	2.5	6.5
Merged-chr9-94688684-2	chr9	94688184	94689184	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 2 of 15)	intron (NM_177909, intron 2 of 15)	18792.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84089388-2	chr10	84088888	84089888	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152790, intron 1 of 4)	intron (NR_152790, intron 1 of 4)	11309.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5727115-2	chr17	5726615	5727615	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 7 of 8)	intron (NM_146073, intron 7 of 8)	-71542.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-3261354-2	chr16	3260854	3261854	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-331044.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94489979-2	chr11	94489479	94490479	+	582.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027984, exon 10 of 10)	3' UTR (NM_027984, exon 10 of 10)	-4669.0	NM_144827	217116.0	Mm.156123	NM_144827	ENSMUSG00000020867	Spata20	Tisp78	spermatogenesis associated 20	protein-coding	0.5	2.0	2.0	0.5	0.0	3.0
Merged-chr13-30663529-2	chr13	30663029	30664029	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134068, intron 1 of 7)	intron (NM_134068, intron 1 of 7)	3470.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-89862577-2	chr16	89862077	89863077	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 8 of 27)	intron (NM_009384, intron 8 of 27)	-44225.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113651173-2	chr5	113650673	113651673	+	582.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008153)	promoter-TSS (NM_008153)	-783.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-87471089-2	chr12	87470589	87471589	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025507, intron 1 of 13)	MTD|LTR|ERVL-MaLR	1210.0	NM_025507	66354.0	Mm.271174	NM_025507	ENSMUSG00000021039	Snw1	2310008B08Rik|AW048543|NCoA-62|SKIP|Skiip	SNW domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-116580138-2	chr8	116579638	116580638	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 5 of 6)	B1_Mus2|SINE|Alu	75123.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-42934076-2	chr3	42933576	42934576	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17D2|LTR|ERVK	1191458.0	NM_027271	73852.0	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156439809-2	chr1	156439309	156440309	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 8 of 15)	intron (NM_009230, intron 8 of 15)	-18894.0	NM_001346967	77352.0	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	19.0	37.5	28.0	8.0	29.0	27.0
Merged-chr15-93461161-2	chr15	93460661	93461661	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358749, intron 7 of 8)	RSINE1|SINE|B4	62697.0	NM_001285863	223828.0	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25644314-2	chr15	25643814	25644814	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 1 of 40)	intron (NM_019472, intron 1 of 40)	21764.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8584530-2	chr11	8584030	8585030	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 3 of 30)	intron (NM_001083587, intron 3 of 30)	80005.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-39629297-1	chr9	39628797	39629797	+	582.5	f0_c57.idr	Intergenic	Intergenic	6172.0	NM_146279	258276.0	Mm.390137	NM_146279	ENSMUSG00000059867	Olfr960	MOR224-12	olfactory receptor 960	protein-coding	0.0	7.0	2.0	0.0	0.0	0.0
Merged-chr19-19675618-2	chr19	19675118	19676118	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-564422.0	NM_001043354	225998.0	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta|hstp	RAR-related orphan receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99399868-2	chr15	99399368	99400368	+	582.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001171034, exon 2 of 11)	5' UTR (NM_001171034, exon 2 of 11)	6649.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	2.5	0.0	0.0	5.5	1.5	0.0
Merged-chr15-12797485-2	chr15	12796985	12797985	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27172.0	NM_029998	77877.0	Mm.207311	NM_029998	ENSMUSG00000022195	6030458C11Rik	-	RIKEN cDNA 6030458C11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90229806-2	chr16	90229306	90230306	+	582.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_178923, exon 20 of 20)	exon (NM_178923, exon 20 of 20)	9064.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-131541988-2	chr7	131541488	131542488	+	582.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008257)	promoter-TSS (NM_008257)	-975.0	NM_008257	15373.0	Mm.323562	NM_008257	ENSMUSG00000040148	Hmx3	Nkx-5.1|Nkx5-1|Nkx5.1	H6 homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69888055-2	chr8	69887542	69888542	+	582.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026818)	promoter-TSS (NM_026818)	-650.0	NM_026818	68709.0	Mm.334584	NM_026818	ENSMUSG00000044006	Cilp2	1110031K21Rik|AA407300|CLIP-2	cartilage intermediate layer protein 2	protein-coding	0.0	1.5	0.5	2.0	6.5	0.0
Merged-chr7-24083924-2	chr7	24083461	24084461	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289637, intron 1 of 3)	intron (NM_001289637, intron 1 of 3)	2064.0	NM_001289637	210135.0	Mm.32254	NM_172483	ENSMUSG00000057101	Zfp180	2310040I01Rik|AI852378|D130011P11|HHZ168	zinc finger protein 180	protein-coding	1.0	3.5	6.5	0.5	4.0	1.5
Merged-chr7-83567734-2	chr7	83567227	83568227	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR10A|LTR|ERVK	-17204.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	0.5	0.0	0.5	2.0	7.5	0.5
Merged-chr11-117970788-2	chr11	117970288	117971288	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1422.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-60663481-2	chr14	60662981	60663981	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033272, intron 1 of 12)	L2a|LINE|L2	28776.0	NM_001033272	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	6.0	0.0	1.0	5.5	0.0	1.5
Merged-chr2-124696197-2	chr2	124695697	124696697	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42616.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44997746-2	chr10	44997246	44998246	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69468.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21139141-2	chr9	21138641	21139641	+	582.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016742, exon 8 of 8)	3' UTR (NM_016742, exon 8 of 8)	-7866.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95669444-2	chr4	95668944	95669944	+	582.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029347, intron 5 of 10)	intron (NM_029347, intron 5 of 10)	90023.0	NM_029347	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90930771-3	chr5	90930272	90931272	+	582.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026788)	promoter-TSS (NM_026788)	-424.0	NM_026788	665563.0	Mm.153030	NM_026788	ENSMUSG00000029376	Mthfd2l	1110019K23Rik|C630010D07Rik	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like	protein-coding	6.5	9.5	1.0	16.5	11.5	10.0
Merged-chr9-47628302-1	chr9	47627802	47628802	+	582.333313	f0_c57.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	97950.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	125.5	313.0	247.0	154.5	293.5	224.5
Merged-chr5-65880740-3	chr5	65880247	65881247	+	582.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	17178.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-72038120-2	chr11	72037620	72038620	+	582.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053245)	promoter-TSS (NM_053245)	-611.0	NM_053245	114230.0	Mm.95707	NM_053245	ENSMUSG00000040554	Aipl1	A930007I01Rik	aryl hydrocarbon receptor-interacting protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38478953-2	chr2	38478453	38479453	+	582.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32744.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53158353-4	chr18	53157823	53158823	+	582.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17969.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	5.5	6.5	6.5	1.5	3.5	1.5
Merged-chr3-118094449-2	chr3	118093949	118094949	+	582.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-225513.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71874300-2	chr17	71873814	71874814	+	582.25	f0_balb.idr|f1_balb.idr	intron (NM_007439, intron 27 of 28)	intron (NM_007439, intron 27 of 28)	92367.0	NM_030179	78785.0	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	6.5	0.0	2.5	6.0	4.5	1.0
Merged-chr7-118115424-2	chr7	118114924	118115924	+	582.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_170669, intron 1 of 4)	intron (NM_170669, intron 1 of 4)	723.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26122848-2	chr17	26122369	26123369	+	582.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024227)	promoter-TSS (NM_024227)	-634.0	NM_024227	68611.0	Mm.273102	NM_024227	ENSMUSG00000024181	Mrpl28	1110015G04Rik|L28mt|MAAT1|MRP-L28|p15	mitochondrial ribosomal protein L28	protein-coding	0.5	1.5	3.5	8.5	19.0	2.0
Merged-chr10-24961286-2	chr10	24960786	24961786	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33816.0	NM_007482	11846.0	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	0.0	6.5	0.5	2.5	0.0	0.0
Merged-chr8-39153017-2	chr8	39152517	39153517	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357305, intron 7 of 8)	(CACAG)n|Simple_repeat|Simple_repeat	-144963.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35059818-1	chr9	35059318	35060318	+	582.0	f1_balb.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-56910.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	13.5	18.5	18.5	4.5	7.5	7.0
Merged-chr9-43096488-1	chr9	43095988	43096988	+	582.0	f0_balb.idr	intron (NM_001359232, intron 1 of 40)	intron (NM_001359232, intron 1 of 40)	9230.0	NM_001359232	69632.0	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	3.5	3.5	4.0	0.0	9.5	6.5
Merged-chr15-96539120-1	chr15	96538620	96539620	+	582.0	f0_c57.idr	Intergenic	Intergenic	-78277.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120661084-1	chr2	120660584	120661584	+	582.0	f0_balb.idr	Intergenic	Intergenic	51489.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-20787823-2	chr15	20787323	20788323	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-121073.0	NM_022816	64833.0	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29776625-2	chr6	29776125	29777125	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	L2|LINE|L2	8182.0	NM_001171000	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-72442107-1	chr12	72441607	72442607	+	582.0	f0_c57.idr	promoter-TSS (NM_001142729)	promoter-TSS (NM_001142729)	-142.0	NM_001142729	78257.0	Mm.266280	NM_030070	ENSMUSG00000021090	Lrrc9	4921529O18Rik|4930432K16Rik	leucine rich repeat containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-110385747-1	chr13	110385247	110386247	+	582.0	f1_balb.idr	Intergenic	Lx5c|LINE|L1	-9297.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0.0	0.0	0.0	1.5	0.0	1.5
Merged-chr8-34153649-2	chr8	34153149	34154149	+	582.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026432)	promoter-TSS (NM_026432)	-914.0	NM_026432	67887.0	Mm.290353	NM_026432	ENSMUSG00000031532	Saraf	1810045K07Rik|Tmem66	store-operated calcium entry-associated regulatory factor	protein-coding	4.5	4.5	9.5	18.5	17.5	8.5
Merged-chr4-86666965-2	chr4	86666471	86667471	+	582.0	f0_balb.idr|f1_balb.idr	intron (NM_007408, intron 3 of 7)	B1F|SINE|Alu	3088.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83118579-2	chr6	83118079	83119079	+	582.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_016757)	TTS (NM_016757)	2882.0	NM_001083923	22377.0	Mm.1109	NM_016757	ENSMUSG00000030035	Wbp1	AI255152	WW domain binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-94725625-2	chr12	94725125	94726125	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	798287.0	NR_106175	102465890.0		NR_106175	ENSMUSG00000098498	Mir8099-1	Gm27917|mmu-mir-8099-1	microRNA 8099-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84015808-1	chr3	84015308	84016308	+	582.0	f0_balb.idr	intron (NM_172681, intron 3 of 34)	intron (NM_172681, intron 3 of 34)	24353.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-16219249-1	chr14	16218749	16219749	+	582.0	f0_balb.idr	Intergenic	L1MA5|LINE|L1	24082.0	NM_001359883	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	0.0	0.0	3.0	0.0	0.0	0.0
Merged-chr10-124917186-2	chr10	124916686	124917686	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	391630.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.0	0.5	0.0	2.5	0.0	0.5
Merged-chr1-178344300-2	chr1	178343800	178344800	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-6485.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-31212689-2	chr9	31212147	31213147	+	582.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102456)	promoter-TSS (NM_001102456)	-799.0	NM_001102456	11804.0	Mm.19133	NM_009691	ENSMUSG00000031996	Aplp2	AI790698|APLP-2|CDEBP	amyloid beta (A4) precursor-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26907858-2	chr2	26907358	26908358	+	582.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011513, exon 3 of 3)	3' UTR (NM_011513, exon 3 of 3)	2784.0	NM_011513	20933.0	Mm.397932	NM_011513	ENSMUSG00000015776	Med22	AW212655|AW558812|Surf-5|Surf5	mediator complex subunit 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4203133-2	chr8	4202633	4203633	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346730, intron 13 of 19)	intron (NM_001346730, intron 13 of 19)	14179.0	NM_207203	73072.0	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	0.0	0.0	0.0	0.0	0.0	5.5
Merged-chr6-97814008-2	chr6	97813508	97814508	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	MTA_Mm|LTR|ERVL-MaLR	6950.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-43587272-2	chr16	43586772	43587772	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 5 of 6)	intron (NM_181058, intron 5 of 6)	-53383.0	NR_030576	100124467.0		NR_030576	ENSMUSG00000076372	Mir568	Mirn568|mmu-mir-568	microRNA 568	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-10260018-1	chr3	10259518	10260518	+	582.0	f0_balb.idr	intron (NM_001357159, intron 1 of 4)	intron (NM_001357159, intron 1 of 4)	-5766.0	NM_001357160	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25739390-2	chr14	25738890	25739890	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 2 of 3)	intron (NM_001101433, intron 2 of 3)	29466.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-30012521-2	chr17	30012021	30013021	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151443, intron 1 of 4)	intron (NR_151443, intron 1 of 4)	7482.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152576682-2	chr1	152576182	152577182	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	48535.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89235638-2	chr6	89235138	89236138	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19459.0	NR_033190	330379.0	Mm.297741	NM_201356		Gm839	-	predicted gene 839	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52598017-2	chr13	52597517	52598517	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 1 of 13)	RLTR17B_Mm|LTR|ERVK	1135.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25626609-1	chr2	25626109	25627109	+	582.0	f0_balb.idr	intron (NM_007995, intron 5 of 9)	intron (NM_007995, intron 5 of 9)	1365.0	NM_007995	14133.0	Mm.10510	NM_007995	ENSMUSG00000026938	Fcna	Fcn1	ficolin A	protein-coding	12.5	24.5	20.5	12.0	22.5	19.0
Merged-chr1-36049459-2	chr1	36048959	36049959	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-18941.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60251823-2	chr10	60251323	60252323	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-25805.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-116424673-2	chr14	116424173	116425173	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175500, intron 7 of 7)	ORR1A2-int|LTR|ERVL-MaLR	-500624.0	NM_001079844	23888.0	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29280493-2	chr6	29279993	29280993	+	582.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001101486)	promoter-TSS (NM_001101486)	-648.0	NM_001101486	245884.0	Mm.33683	NM_001101486	ENSMUSG00000079652	Fam71f2	AI507611|GARI	family with sequence similarity 71, member F2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136652703-1	chr6	136652203	136653203	+	582.0	f1_balb.idr	intron (NM_025806, intron 1 of 10)	intron (NM_025806, intron 1 of 10)	9190.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	16.5	12.0	10.5	8.5	16.5	4.5
Merged-chr14-65026375-1	chr14	65025875	65026875	+	582.0	f0_balb.idr	intron (NM_153414, intron 10 of 16)	intron (NM_153414, intron 10 of 16)	71731.0	NM_018788	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	10.0	7.5	0.0	5.0	4.5	4.0
Merged-chr11-95010504-2	chr11	95010004	95011004	+	582.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_146025, exon 1 of 10)	5' UTR (NM_146025, exon 1 of 10)	625.0	NM_146025	217125.0	Mm.297199	NM_146025	ENSMUSG00000047181	Samd14	AI839049|AI854782|BC034054	sterile alpha motif domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98785239-2	chr11	98784739	98785739	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9862.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37779955-1	chr13	37779455	37780455	+	582.0	f0_balb.idr	Intergenic	Intergenic	-46083.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66685317-1	chr15	66684817	66685817	+	582.0	f0_c57.idr	exon (NM_009375, exon 11 of 48)	exon (NM_009375, exon 11 of 48)	14547.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	1.0	45.5	14.5	13.5	48.0	24.5
Merged-chr13-83068886-3	chr13	83068465	83069465	+	582.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-370632.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	20.0	23.0	9.0	18.5	18.0	8.0
Merged-chr2-169791769-2	chr2	169791266	169792266	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	158120.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr2-35194225-2	chr2	35193725	35194725	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026697, intron 1 of 7)	intron (NM_026697, intron 1 of 7)	6895.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-141768578-1	chr2	141768078	141769078	+	582.0	f1_c57bl6.idr	intron (NM_001013802, intron 7 of 18)	Lx3_Mus|LINE|L1	-1097102.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-57198130-1	chr19	57197630	57198630	+	582.0	f0_balb.idr	promoter-TSS (NM_001290816)	promoter-TSS (NM_001290816)	-499.0	NM_001290816	226251.0	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12473056-2	chr13	12472556	12473556	+	582.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133643, exon 6 of 6)	3' UTR (NM_133643, exon 6 of 6)	-11318.0	NM_001291057	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-12373811-1	chr12	12373311	12374311	+	582.0	f1_balb.idr	3' UTR (NM_029758, exon 13 of 13)	3' UTR (NM_029758, exon 13 of 13)	18664.0	NR_045829	70858.0	Mm.410838	NR_045829	ENSMUSG00000114136	4921511I17Rik	-	RIKEN cDNA 4921511I17 gene	ncRNA	1.5	3.5	0.0	4.5	4.0	1.0
Merged-chr19-47355549-1	chr19	47355049	47356049	+	582.0	f1_balb.idr	intron (NM_008018, intron 5 of 14)	intron (NM_008018, intron 5 of 14)	-81960.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	0.0	13.0	5.0	2.0	0.0	3.0
Merged-chr15-25628640-2	chr15	25628140	25629140	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 1 of 40)	Lx8b|LINE|L1	6090.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-89131276-2	chr4	89130776	89131776	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-3050.0	NR_151607	102637941.0	Mm.366358	NR_151607		Gm12602	-	predicted gene 12602	ncRNA	0.0	5.5	5.5	2.5	3.5	6.0
Merged-chr11-70430607-2	chr11	70430107	70431107	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1973.0	NM_001271360	216869.0	Mm.203747	NM_145429	ENSMUSG00000060216	Arrb2	AI326910|AW122872|Arr3	arrestin, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-48547325-2	chr13	48546825	48547825	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9053.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43132918-1	chr17	43132418	43133418	+	582.0	f1_balb.idr	Intergenic	RMER2|LTR|ERV1	25373.0	NR_045155	545207.0	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr12-21288741-1	chr12	21288241	21289241	+	582.0	f1_c57bl6.idr	intron (NM_018813, intron 1 of 17)	intron (NM_018813, intron 1 of 17)	2444.0	NM_018813	54451.0	Mm.356778	NM_018813	ENSMUSG00000054309	Cpsf3	-	cleavage and polyadenylation specificity factor 3	protein-coding	5.5	17.5	8.0	19.0	7.0	16.0
Merged-chr3-147451676-1	chr3	147451176	147452176	+	582.0	f1_balb.idr	Intergenic	L1_Mur2|LINE|L1	599309.0	NM_001302957	70892.0	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	1.0	0.0	0.0	3.5	0.0	0.0
Merged-chr6-136722142-1	chr6	136721642	136722642	+	582.0	f1_balb.idr	intron (NM_145067, intron 16 of 25)	B3|SINE|B2	59600.0	NM_145067	14917.0	Mm.222729	NM_145067	ENSMUSG00000042638	Gucy2c	AI893437|GC-C|Gcc	guanylate cyclase 2c	protein-coding	10.0	11.0	8.5	1.5	1.5	10.0
Merged-chr11-119991000-2	chr11	119990500	119991500	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037754, intron 6 of 13)	GC_rich|Low_complexity|Low_complexity	-23767.0	NR_037225	100526518.0		NR_037225	ENSMUSG00000105524	Mir3065	mir-3065|mmu-mir-3065	microRNA 3065	ncRNA	2.5	0.0	0.0	1.0	0.0	1.0
Merged-chr3-37477831-2	chr3	37477331	37478331	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021343, intron 14 of 15)	intron (NM_021343, intron 14 of 15)	57881.0	NM_021343	57815.0	Mm.172679	NM_021343	ENSMUSG00000027722	Spata5	2510048F20Rik|C78064|Spaf	spermatogenesis associated 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80042645-2	chr11	80042145	80043145	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38346.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4658790-2	chr11	4658290	4659290	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029291, intron 7 of 19)	intron (NM_029291, intron 7 of 19)	20997.0	NM_029291	75452.0	Mm.439906	NM_029291	ENSMUSG00000020412	Ascc2	1700011I11Rik|2610034L15Rik|AI482016|ASC1p100|AW046480	activating signal cointegrator 1 complex subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158405682-2	chr2	158405199	158406199	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	-4154.0	NM_001291137	228850.0	Mm.398185	NM_177227	ENSMUSG00000027652	Ralgapb	AI507211|B230339M05Rik|p170	Ral GTPase activating protein, beta subunit (non-catalytic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6465495-2	chr19	6464995	6465995	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 7 of 22)	intron (NM_001205234, intron 7 of 22)	46757.0	NM_001205234	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-70070061-2	chr7	70069561	70070561	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	267761.0	NR_131145	624549.0	Mm.116344	NR_131144	ENSMUSG00000109097	Gm29683	Gm44536	predicted gene, 29683	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-23690133-1	chr19	23689633	23690633	+	582.0	f1_c57bl6.idr	intron (NM_028208, intron 1 of 6)	ORR1A2|LTR|ERVL-MaLR	2733.0	NM_028208	72351.0	Mm.474795	NM_028208	ENSMUSG00000074925	Ptar1	1700084D09Rik|2010013L17Rik|4930428J16Rik|AI449677	protein prenyltransferase alpha subunit repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66242136-2	chr5	66241661	66242661	+	582.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-17737.0	NM_001302833	70918.0	Mm.23166	NM_027602	ENSMUSG00000029206	Nsun7	4921525L17Rik	NOL1/NOP2/Sun domain family, member 7	protein-coding	0.0	8.5	1.5	1.5	4.0	5.5
Merged-chr1-60027345-2	chr1	60026845	60027845	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357296, intron 2 of 10)	intron (NM_001357296, intron 2 of 10)	15777.0	NM_001357296	70375.0	Mm.17834	NM_027407	ENSMUSG00000026018	Ica1l	1700030B17Rik|Als2cr15|b2b3465Clo	islet cell autoantigen 1-like	protein-coding	11.5	6.5	5.5	13.5	7.0	9.5
Merged-chr10-8527695-2	chr10	8527195	8528195	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8870.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124486955-2	chr5	124486455	124487455	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029532, intron 1 of 1)	intron (NM_029532, intron 1 of 1)	3800.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-103028652-1	chr10	103028152	103029152	+	582.0	f0_balb.idr	5' UTR (NM_172553, exon 1 of 4)	5' UTR (NM_172553, exon 1 of 4)	125.0	NM_172553	216285.0	Mm.19287	NM_172553	ENSMUSG00000036602	Alx1	AI314867|C130005I02|Cart1	ALX homeobox 1	protein-coding	0.0	0.5	1.5	0.5	2.0	0.0
Merged-chr11-118021916-2	chr11	118021416	118022416	+	582.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001167746, exon 81 of 81)	3' UTR (NM_001167746, exon 81 of 81)	19646.0	NR_105898	102466768.0		NR_105898	ENSMUSG00000098958	Mir6933	Gm27856|mmu-mir-6933	microRNA 6933	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89363923-2	chr6	89363423	89364423	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-1310.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5469360-1	chr2	5468860	5469860	+	582.0	f0_balb.idr	intron (NM_001290375, intron 2 of 10)	intron (NM_001290375, intron 2 of 10)	89970.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-75521965-1	chr9	75521465	75522465	+	582.0	f1_c57bl6.idr	intron (NM_001357828, intron 3 of 10)	B3|SINE|B2	37692.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr11-94678093-1	chr11	94677593	94678593	+	582.0	f1_c57bl6.idr	promoter-TSS (NM_145828)	promoter-TSS (NM_145828)	-600.0	NM_145828	217119.0	Mm.100638	NM_145828	ENSMUSG00000020868	Xylt2	E030002B02Rik|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19632563-2	chr3	19632063	19633063	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-11897.0	NM_001081281	381485.0	Mm.35419	NM_001081281	ENSMUSG00000060913	Trim55	D830041C10Rik|Murf2|Rnf29	tripartite motif-containing 55	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-115934706-2	chr13	115934206	115935206	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	374982.0	NM_021459	16392.0	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	0.0	0.0	1.0	0.0	0.5	0.0
Merged-chr12-16996680-1	chr12	16996180	16997180	+	582.0	f1_c57bl6.idr	intron (NM_172574, intron 3 of 6)	intron (NM_172574, intron 3 of 6)	3438.0	NM_172574	217430.0	Mm.379451	NM_172574	ENSMUSG00000045679	Pqlc3	C78076|E030024M05Rik	PQ loop repeat containing	protein-coding	1.0	2.0	0.0	3.5	0.0	0.0
Merged-chr9-55589240-1	chr9	55588740	55589740	+	582.0	f0_balb.idr	intron (NM_001357652, intron 28 of 32)	intron (NM_001357652, intron 28 of 32)	-32460.0	NM_001357653	244891.0	Mm.86588	NM_175536	ENSMUSG00000034007	Scaper	C430017I08|D530014O03Rik|Zfp291	S phase cyclin A-associated protein in the ER	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44989422-1	chr19	44988922	44989922	+	582.0	f1_c57bl6.idr	promoter-TSS (NM_011976)	promoter-TSS (NM_011976)	78.0	NM_011976	26456.0	Mm.34404	NM_011976	ENSMUSG00000025207	Sema4g	AI507908|AW554132	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G	protein-coding	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134181680-2	chr5	134181180	134182180	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2358.0	NM_001359852	114674.0	Mm.218744	NM_053266	ENSMUSG00000015942	Gtf2ird2	1700012P16Rik	GTF2I repeat domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76015280-2	chr15	76014780	76015780	+	582.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134087)	promoter-TSS (NM_134087)	-944.0	NM_134087	105732.0	Mm.267178	NM_134087	ENSMUSG00000046761	Fam83h	AA409316	family with sequence similarity 83, member H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-97558577-2	chr13	97558077	97559077	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-1423.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54388990-3	chr14	54388491	54389491	+	582.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	L2|LINE|L2	20481.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	0.5	3.0	4.5	6.5	10.0	17.0
Merged-chr19-10052877-2	chr19	10052377	10053377	+	582.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_021890, exon 3 of 12)	exon (NM_021890, exon 3 of 12)	11329.0	NM_021890	60527.0	Mm.253875	NM_021890	ENSMUSG00000024664	Fads3	AI464531	fatty acid desaturase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166560099-2	chr2	166559599	166560599	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4423.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78983560-1	chr11	78983060	78984060	+	582.0	f0_c57.idr	intron (NM_010708, intron 1 of 10)	intron (NM_010708, intron 1 of 10)	1364.0	NM_001159301	16859.0	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110810890-2	chr7	110810390	110811390	+	582.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001276301, exon 15 of 15)	exon (NM_001276301, exon 15 of 15)	33491.0	NM_025999	67150.0	Mm.96867	NM_025999	ENSMUSG00000030788	Rnf141	2610110L04Rik|AA792898|AU022812|ZFP36|ZNF230	ring finger protein 141	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-19401210-1	chr5	19400710	19401710	+	582.0	f0_balb.idr	intron (NM_001170746, intron 1 of 22)	intron (NM_001170746, intron 1 of 22)	174164.0	NM_001170746	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94499938-1	chr11	94499438	94500438	+	582.0	f1_c57bl6.idr	promoter-TSS (NM_027984)	promoter-TSS (NM_027984)	36.0	NM_001361558	71889.0	Mm.248620	NM_027984	ENSMUSG00000010080	Epn3	2310022G12Rik	epsin 3	protein-coding	3.5	3.0	2.5	0.0	0.0	0.5
Merged-chr11-107304121-2	chr11	107303621	107304621	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	intron (NR_153311, intron 4 of 9)	-114740.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6674580-2	chr2	6674081	6675081	+	582.0	f0_balb.idr|f0_c57.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	47081.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33949865-1	chr17	33949365	33950365	+	582.0	f1_balb.idr	TTS (NM_019420)	TTS (NM_019420)	1623.0	NM_019420	54218.0	Mm.11132	NM_019420	ENSMUSG00000067370	B3galt4	Gal-T2|Galt2	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4	protein-coding	1.5	2.5	3.0	10.0	27.5	7.0
Merged-chr9-22312916-2	chr9	22312416	22313416	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR9A|LTR|ERVK	-5278.0	NM_145612	235050.0	Mm.306038	NM_145612	ENSMUSG00000066829	Zfp810	BC005471	zinc finger protein 810	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-34907175-2	chr12	34906675	34907675	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 2 of 27)	CpG	9920.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	2.5	0.0	0.0	1.0	1.0	0.0
Merged-chr16-55525669-1	chr16	55525169	55526169	+	582.0	f0_balb.idr	Intergenic	Intergenic	30938.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106723043-2	chr11	106722532	106723532	+	582.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-7751.0	NM_001305157	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-15977698-2	chr7	15977198	15978198	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081418, intron 9 of 13)	B1_Mur4|SINE|Alu	-10163.0	NM_153068	259300.0	Mm.138215	NM_153068	ENSMUSG00000074364	Ehd2	BC027084|C130052H20Rik	EH-domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22923098-2	chr11	22922598	22923598	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361661, intron 2 of 2)	ORR1B2-int|LTR|ERVL-MaLR	-48907.0	NM_011663	22183.0	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102374251-2	chr12	102373751	102374751	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 7 of 9)	MLT1C|LTR|ERVL-MaLR	65562.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-16220861-2	chr15	16220361	16221361	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2A|LINE|L1	-557240.0	NM_009869	12565.0	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-27176538-2	chr8	27176038	27177038	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-1892.0	NM_001080813	75767.0	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-62550202-2	chr8	62549702	62550702	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-401030.0	NM_001252620	72902.0	Mm.334552	NM_023689	ENSMUSG00000054162	Spock3	2900045C01Rik|AI428471|mKIAA4039	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8324574-2	chr12	8324074	8325074	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021429, intron 4 of 6)	intron (NM_021429, intron 4 of 6)	11141.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81785052-2	chr13	81784552	81785552	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007684, intron 2 of 4)	intron (NM_007684, intron 2 of 4)	1805.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99095410-3	chr7	99094963	99095963	+	582.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 4 of 14)	B3|SINE|B2	45681.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	2.5	19.0	8.0	1.0	7.0	3.5
Merged-chr16-84546299-1	chr16	84545799	84546799	+	582.0	f1_balb.idr	Intergenic	RMER1C|Other|Other	-133490.0	NR_040537	78023.0	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	0.0	0.0	0.0	0.5	0.0	0.5
Merged-chr7-44304073-1	chr7	44303573	44304573	+	582.0	f0_c57.idr	3' UTR (NM_009131, exon 4 of 4)	3' UTR (NM_009131, exon 4 of 4)	2886.0	NM_009131	20256.0	Mm.20428	NM_009131	ENSMUSG00000004473	Clec11a	AW457320|Clecsf3|Scgf	C-type lectin domain family 11, member a	protein-coding	10.5	33.5	34.5	4.0	45.5	26.5
Merged-chr2-24587516-2	chr2	24587016	24588016	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-111917.0	NM_011040	18510.0	Mm.2533	NM_011040	ENSMUSG00000026976	Pax8	Pax-8	paired box 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35660409-1	chr17	35659909	35660909	+	582.0	f1_c57bl6.idr	exon (NM_175137, exon 17 of 29)	exon (NM_175137, exon 17 of 29)	7183.0	NM_175137	68915.0	Mm.32002	NM_175137	ENSMUSG00000038838	Vars2	1190004I24Rik|Vars2l|mKIAA1885	valyl-tRNA synthetase 2, mitochondrial	protein-coding	4.0	0.0	2.0	0.0	0.0	4.5
Merged-chr1-102187025-2	chr1	102186525	102187525	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	1031257.0	NR_037989	100504525.0	Mm.87065	NR_037989	ENSMUSG00000100684	Gm20268	-	predicted gene, 20268	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32623135-2	chr11	32622635	32623635	+	582.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001359177, exon 19 of 19)	3' UTR (NM_001359177, exon 19 of 19)	-19420.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr6-117909263-2	chr6	117908763	117909763	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166428, intron 1 of 3)	B1_Mm|SINE|Alu	1459.0	NM_001166429	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180399648-2	chr1	180399148	180400148	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	(ACTG)n|Simple_repeat|Simple_repeat	-69099.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32379000-2	chr18	32378497	32379497	+	582.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045403)	promoter-TSS (NR_045403)	-713.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0.0	8.5	3.0	2.0	0.0	2.0
Merged-chr5-4191290-2	chr5	4190790	4191790	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1077.0	NM_001042670	208595.0	Mm.129815	NM_001042670	ENSMUSG00000053178	Mterf1b	Gm9897	mitochondrial transcription termination factor 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-96213120-1	chr7	96212620	96213620	+	582.0	f0_balb.idr	intron (NM_001310760, intron 1 of 32)	intron (NM_001310760, intron 1 of 32)	1449.0	NM_001310760	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	2.5	0.0	0.0	0.0	0.0	0.0
Merged-chr18-63778113-2	chr18	63777613	63778613	+	581.916626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001360837, exon 15 of 27)	exon (NM_001360837, exon 15 of 27)	69418.0	NM_001014981	104082.0	Mm.30850	NM_001014981	ENSMUSG00000040560	Wdr7	AI462727|TRAG|mKIAA0541	WD repeat domain 7	protein-coding	0.0	0.0	2.5	0.0	1.5	3.0
Merged-chr9-110655276-2	chr9	110654776	110655776	+	581.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1115.0	NM_183276	235627.0	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95210486-2	chr4	95209967	95210967	+	581.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-158245.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.0	0.0	1.0	0.0	3.5	2.5
Merged-chr19-17256555-3	chr19	17256053	17257053	+	581.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	82952.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	2.5	27.0	20.0	10.5	3.5	7.0
Merged-chr8-71355663-2	chr8	71355187	71356187	+	581.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 31 of 39)	intron (NM_001142322, intron 31 of 39)	-11161.0	NM_001145780	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	0.0	2.5	1.0	0.5	0.0	1.0
Merged-chr16-34920331-2	chr16	34919831	34920831	+	581.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_139300, intron 14 of 31)	intron (NM_139300, intron 14 of 31)	18998.0	NR_040536	76649.0	Mm.420532	NR_040536	ENSMUSG00000100593	1700119H24Rik	-	RIKEN cDNA 1700119H24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20900836-2	chr9	20900336	20901336	+	581.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2246.0	NM_016876	53356.0	Mm.427309	NM_016876	ENSMUSG00000070319	Eif3g	44kDa|D0Jmb4|Eif3s4|TU-189B2|eIF3-p44|p44	eukaryotic translation initiation factor 3, subunit G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141797434-2	chr4	141796902	141797902	+	581.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277932, intron 2 of 7)	L1ME3|LINE|L1	3790.0	NM_001277932	12371.0	Mm.88829	NM_015733	ENSMUSG00000028914	Casp9	AI115399|APAF-3|AW493809|CASP-9|Caspase-9|ICE-LAP6|Mch6	caspase 9	protein-coding	10.5	2.0	0.0	6.5	4.0	5.0
Merged-chr12-116432121-1	chr12	116431621	116432621	+	581.666687	f1_c57bl6.idr	intron (NM_133762, intron 16 of 28)	RLTR19-int|LTR|ERVK	26719.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	2.0	15.0	19.5	3.0	2.0	5.5
Merged-chr13-9767566-3	chr13	9767085	9768085	+	581.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2264.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43990521-1	chr5	43990021	43991021	+	581.666687	f1_c57bl6.idr	Intergenic	Intergenic	-8722.0	NM_001271616	14181.0	Mm.46053	NM_008009	ENSMUSG00000048373	Fgfbp1	FGF-BP|FGF-BP1|FGFBP-1	fibroblast growth factor binding protein 1	protein-coding	0.0	1.5	1.5	1.5	0.0	1.5
Merged-chr9-123933886-3	chr9	123933376	123934376	+	581.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34816.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94011295-3	chr8	94010837	94011837	+	581.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011787, intron 1 of 13)	intron (NM_011787, intron 1 of 13)	1303.0	NM_011787	23802.0	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31611449-2	chr5	31610949	31611949	+	581.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-2502.0	NM_025796	66845.0	Mm.120763	NM_025796	ENSMUSG00000106918	Mrpl33	0610009M10Rik|L33mt|MRP-L33	mitochondrial ribosomal protein L33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-100629936-3	chr10	100629447	100630447	+	581.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37561.0	NM_001081246	66605.0	Mm.72646	NM_001081246	ENSMUSG00000056912	1700017N19Rik	-	RIKEN cDNA 1700017N19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37543648-3	chr19	37543108	37544108	+	581.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6810.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	1.0	0.0	4.5	1.0	0.0	5.0
Merged-chr18-13987363-2	chr18	13986863	13987863	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14630.0	NM_145492	225207.0	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-32632875-2	chr14	32632375	32633375	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001796, intron 5 of 6)	intron (NM_001001796, intron 5 of 6)	32948.0	NM_001001796	107751.0	Mm.119274	NM_001001796	ENSMUSG00000041730	Prrxl1	Drg11|Drgx	paired related homeobox protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8779868-2	chr10	8779367	8780367	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	L1MB3|LINE|L1	106203.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	1.5	4.0	2.0	13.0	0.5	0.0
Merged-chr10-81305875-2	chr10	81305375	81306375	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 4 of 17)	intron (NM_001293647, intron 4 of 17)	12912.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47780356-2	chr17	47779856	47780856	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-5388.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135262996-2	chr4	135262496	135263496	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	RSINE1|SINE|B4	9764.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-55165402-2	chr10	55164902	55165902	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-941515.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124912625-1	chr8	124912125	124913125	+	581.5	f0_balb.idr	intron (NM_053207, intron 3 of 4)	intron (NM_053207, intron 3 of 4)	14739.0	NM_001111141	244666.0	Mm.482915	NM_001111141	ENSMUSG00000031986	Sprtn	Gm505	SprT-like N-terminal domain	protein-coding	12.5	4.5	7.5	6.0	29.0	18.0
Merged-chr16-54789440-2	chr16	54788940	54789940	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F|LINE|L1	493797.0	NM_178720	239852.0	Mm.245045	NM_178720	ENSMUSG00000064310	Zpld1	9430016A21Rik	zona pellucida like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38377937-2	chr16	38377437	38378437	+	581.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081984, exon 4 of 4)	3' UTR (NM_001081984, exon 4 of 4)	15747.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-52078627-2	chr11	52078127	52079127	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166654, intron 13 of 13)	L1MC5|LINE|L1	-20197.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-67074287-2	chr14	67073787	67074787	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1816.0	NM_001205188	71978.0	Mm.273997	NM_028032	ENSMUSG00000022052	Ppp2r2a	2410004D02Rik|mKIAA1541	protein phosphatase 2, regulatory subunit B, alpha	protein-coding	0.0	3.0	2.0	0.0	0.0	0.5
Merged-chr7-73425372-2	chr7	73424872	73425872	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49598.0	NR_040324	319783.0	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-33433190-2	chr12	33432690	33433690	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172253, intron 1 of 3)	intron (NM_172253, intron 1 of 3)	3566.0	NM_172253	28071.0	Mm.196472	NM_172253	ENSMUSG00000020561	Twistnb	2410173G11|2810024J17Rik|D16Wsu83e	twist basic helix-loop-helix transcription factor 1 neighbor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11488815-2	chr2	11488315	11489315	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133232, intron 5 of 14)	intron (NM_133232, intron 5 of 14)	13275.0	NM_001177754	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-94618942-2	chr15	94618442	94619442	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10243.0	NM_178789	320709.0	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40092664-2	chr10	40092164	40093164	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	(CA)n|Simple_repeat|Simple_repeat	49590.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-171345481-2	chr2	171344981	171345981	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	613674.0	NM_001163686	76829.0	Mm.41633	NM_029761	ENSMUSG00000027560	Dok5	2700055C10Rik	docking protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-74762998-2	chr16	74762498	74763498	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358493, intron 1 of 28)	Lx3A|LINE|L1	329772.0	NM_001358491	268902.0	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-37954241-2	chr18	37953741	37954741	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010411, intron 2 of 14)	intron (NM_010411, intron 2 of 14)	747.0	NM_010411	15183.0	Mm.20521	NM_010411	ENSMUSG00000024454	Hdac3	AW537363	histone deacetylase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-39064387-2	chr2	39063887	39064887	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290649, intron 2 of 21)	B1_Mus1|SINE|Alu	1154.0	NR_110968	76899.0	Mm.131098	NM_029793	ENSMUSG00000026754	Golga1	0710001G09Rik|2210418B03Rik|AW107649|Golgi97|awag|golgin-97	golgi autoantigen, golgin subfamily a, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-93911326-2	chr17	93910826	93911826	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	712158.0	NM_009625	11516.0	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr16-90728557-2	chr16	90728057	90729057	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-1186.0	NM_025642	66578.0	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6453284-2	chr2	6452784	6453784	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100548.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25679086-2	chr8	25678586	25679586	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081269, intron 9 of 22)	7SK|RNA|RNA	38509.0	NM_001081269	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98246998-2	chr12	98246498	98247498	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008079, intron 5 of 16)	intron (NM_008079, intron 5 of 16)	12461.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139392275-2	chr7	139391775	139392775	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183144, intron 1 of 15)	intron (NM_183144, intron 1 of 15)	3166.0	NM_001127363	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156557099-2	chr1	156556599	156557599	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1688.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	6.5	9.5	3.5	0.5	11.0	6.5
Merged-chr18-27220499-2	chr18	27219999	27220999	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1339665.0	NR_045398	320624.0	Mm.50107	NR_045398		4930474G06Rik	-	RIKEN cDNA 4930474G06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68976694-2	chr11	68976194	68977194	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie4a|DNA|hAT-Charlie	-1509.0	NM_001285441	57785.0	Mm.143774	NM_021329	ENSMUSG00000032892	Rangrf	2400006H24Rik|Mog1|Rangnrf	RAN guanine nucleotide release factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6643459-2	chr2	6642959	6643959	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 5 of 15)	intron (NM_001110232, intron 5 of 15)	78203.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84524897-2	chr2	84524397	84525397	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H2|LTR|ERVL-MaLR	-18024.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53421956-2	chr11	53421456	53422456	+	581.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153069)	TTS (NM_153069)	1180.0	NM_153069	259301.0	Mm.24283	NM_153069	ENSMUSG00000036216	Leap2	leap-2	liver-expressed antimicrobial peptide 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32674492-2	chr16	32673992	32674992	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289443, intron 1 of 5)	intron (NM_001289443, intron 1 of 5)	1338.0	NM_001289443	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0.0	1.5	0.0	0.0	0.0	1.0
Merged-chr1-193841763-2	chr1	193841263	193842263	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-334233.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53224429-2	chr15	53223929	53224929	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	121754.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34866895-2	chr6	34866395	34867395	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_197986, intron 1 of 1)	B4|SINE|B4	3749.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98998003-2	chr15	98997503	98998503	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	12038.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98355776-2	chr13	98355276	98356276	+	581.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008242, exon 1 of 1)	exon (NM_008242, exon 1 of 1)	1531.0	NM_008242	15229.0	Mm.347441	NM_008242	ENSMUSG00000078302	Foxd1	AI385632|BF-2|FREAC4|Hfh10|Hfhbf2	forkhead box D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136518841-2	chr5	136518341	136519341	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291238, intron 1 of 22)	ID_B1|SINE|B4	47140.0	NM_001291239	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-109228757-2	chr13	109228257	109229257	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-95987.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60957471-2	chr10	60956971	60957971	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3252.0	NR_130327	100316671.0		NR_130327	ENSMUSG00000080526	Mir466j	Mirn466j|mmu-mir-466j	microRNA 466j	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132977586-2	chr4	132977086	132978086	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010208, intron 1 of 12)	intron (NM_010208, intron 1 of 12)	3491.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127259342-2	chr2	127258842	127259842	+	581.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175145, exon 4 of 4)	3' UTR (NM_175145, exon 4 of 4)	-10887.0	NM_139308	99138.0	Mm.41271	NM_139308	ENSMUSG00000027367	Stard7	AI852671|AL022671|AW544915	START domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129381377-2	chr6	129380877	129381877	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027709, intron 2 of 5)	MTEa|LTR|ERVL-MaLR	4126.0	NM_027709	71183.0	Mm.79402	NM_027709	ENSMUSG00000030158	Clec12b	4933425B16Rik	C-type lectin domain family 12, member B	protein-coding	8.0	0.0	0.0	2.5	4.0	1.5
Merged-chr17-57447952-2	chr17	57447452	57448452	+	581.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001355723, exon 16 of 22)	exon (NM_001355723, exon 16 of 22)	89266.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117283591-2	chr8	117283091	117284091	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	26572.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-83594336-2	chr14	83593836	83594836	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	480954.0	NR_153783	102635012.0	Mm.399509	NR_153783	ENSMUSG00000115043	Gm32455	-	predicted gene, 32455	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-43706222-2	chr10	43705747	43706747	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39911.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55014323-2	chr13	55013823	55014823	+	581.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001206390, exon 6 of 19)	exon (NM_001206390, exon 6 of 19)	6496.0	NM_001206390	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	3.0	3.0	0.0	0.0	0.0	2.0
Merged-chr5-83977363-2	chr5	83976863	83977863	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B4|LTR|ERVL	440019.0	NM_007937	13839.0	Mm.137991	NM_007937	ENSMUSG00000029245	Epha5	AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk	Eph receptor A5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-92578410-2	chr13	92577910	92578910	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2178.0	NM_030237	79401.0	Mm.23520	NM_030237	ENSMUSG00000046957	Spz1	1700027M20Rik|AI429130	spermatogenic leucine zipper 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-34513354-2	chr12	34512854	34513854	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 4 of 27)	intron (NM_001271386, intron 4 of 27)	15535.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0.5	0.0	1.5	0.5	0.0	0.5
Merged-chr11-69057800-2	chr11	69057300	69058300	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-1975.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73747752-2	chr13	73747252	73748252	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-15908.0	NM_001360694	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-102677757-2	chr13	102677257	102678257	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15790.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-81539414-2	chr18	81538914	81539914	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	452666.0	NR_039589	100628596.0		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164162976-2	chr2	164162476	164163476	+	581.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008435)	TTS (NM_008435)	8137.0	NM_008435	16538.0	Mm.6217	NM_008435	ENSMUSG00000040164	Kcns1	Kv9.1	K+ voltage-gated channel, subfamily S, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-147728127-2	chr3	147727627	147728627	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	HERVL40-int|LTR|ERVL	875760.0	NM_001302957	70892.0	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116687974-2	chr4	116687474	116688474	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011034, intron 2 of 5)	B1_Mur2|SINE|Alu	-1952.0	NR_040442	100502959.0	Mm.395400	NR_040442		AV051173	-	expressed sequence AV051173	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134196385-2	chr6	134195885	134196885	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	160685.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51512223-2	chr3	51511723	51512723	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	28257.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149578980-2	chr4	149578480	149579480	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7488.0	NM_001290989	65945.0	Mm.38993	NM_023051	ENSMUSG00000039953	Clstn1	1810034E21Rik|Cst-1|Cstn1	calsyntenin 1	protein-coding	0.0	1.5	2.0	0.0	0.0	1.5
Merged-chr11-77450037-2	chr11	77449537	77450537	+	581.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001291190, exon 13 of 14)	exon (NM_001291190, exon 13 of 14)	-13876.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-126788920-2	chr2	126788420	126789420	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-5460.0	NM_029163	75083.0	Mm.389373	NM_029163	ENSMUSG00000027364	Usp50	1700086G18Rik|4930511O11Rik	ubiquitin specific peptidase 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55900804-2	chr19	55900304	55901304	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142924, intron 1 of 11)	intron (NM_001142924, intron 1 of 11)	5483.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150784548-3	chr2	150784046	150785046	+	581.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2250.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51928600-2	chr11	51928100	51929100	+	581.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-39031.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167993270-2	chr2	167992770	167993770	+	581.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080708, intron 8 of 21)	intron (NM_001080708, intron 8 of 21)	17323.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-39650695-2	chr8	39650199	39651199	+	581.25	f0_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-8021.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	53.0	106.0	70.5	17.5	162.0	77.5
Merged-chr11-4916208-2	chr11	4915708	4916708	+	581.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172438, intron 12 of 19)	intron (NM_172438, intron 12 of 19)	-2308.0	NR_102683	100359413.0		NR_102683	ENSMUSG00000084381	AA413626	-	ribosomal protein L17 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146729461-2	chr5	146728961	146729961	+	581.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	65495.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	4.5	0.0	3.0	0.0	1.0	0.0
Merged-chr10-84398643-3	chr10	84398131	84399131	+	581.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 2 of 6)	MTD|LTR|ERVL-MaLR	41840.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-156559372-2	chr3	156558872	156559872	+	581.166687	f1_balb.idr|f1_c57bl6.idr	TTS (NR_040400)	TTS (NR_040400)	2315.0	NR_040398	329782.0	Mm.183459	NR_040398	ENSMUSG00000085084	4930570G19Rik	C630015G22	RIKEN cDNA 4930570G19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96058466-3	chr3	96057954	96058954	+	581.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013841)	promoter-TSS (NM_013841)	1.0	NM_013841	22365.0	Mm.263185	NM_013841	ENSMUSG00000015747	Vps45	AI462172|AW554165|mVps45	vacuolar protein sorting 45	protein-coding	5.0	9.5	9.5	5.5	16.5	13.5
Merged-chr7-35234417-1	chr7	35233917	35234917	+	581.0	f0_balb.idr	Intergenic	Intergenic	-19072.0	NM_001024707	435965.0	Mm.333783	NM_001024707	ENSMUSG00000001802	Lrp3	-	low density lipoprotein receptor-related protein 3	protein-coding	25.5	69.0	52.0	12.5	21.5	36.0
Merged-chr15-58297783-2	chr15	58297283	58298283	+	581.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26386.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105706266-1	chr4	105705766	105706766	+	581.0	f0_balb.idr	Intergenic	Intergenic	-534947.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	0.0	0.0	0.0	2.0	1.5	4.5
Merged-chr3-89794208-2	chr3	89793708	89794708	+	581.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20599.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5585696-2	chr19	5585196	5586196	+	581.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_I-int|LTR|ERV1	-16177.0	NM_026616	68209.0	Mm.246200	NM_026616	ENSMUSG00000024925	Rnaseh2c	1500026D16Rik|AYP1	ribonuclease H2, subunit C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60677144-1	chr13	60676644	60677644	+	581.0	f1_balb.idr	intron (NM_134062, intron 2 of 26)	B1_Mus1|SINE|Alu	74933.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	3.5	12.5	15.5	15.5	25.5	22.5
Merged-chr15-51673662-1	chr15	51673162	51674162	+	581.0	f0_balb.idr	Intergenic	Intergenic	191799.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr15-81852123-1	chr15	81851623	81852623	+	581.0	f1_balb.idr	intron (NM_020507, intron 1 of 1)	B1F2|SINE|Alu	6203.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	10.5	1.0	5.5	15.0	3.0	4.5
Merged-chr17-25919118-3	chr17	25918660	25919660	+	581.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139154, intron 2 of 6)	CpG	554.0	NM_139154	224624.0	Mm.328872	NM_139154	ENSMUSG00000025730	Rab40c	RAR3	Rab40C, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86968562-1	chr17	86968062	86969062	+	581.0	f1_balb.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	5451.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	0.0	8.0	6.5	0.0	1.0	0.0
Merged-chr1-131283177-1	chr1	131282677	131283677	+	581.0	f0_balb.idr	Intergenic	Intergenic	-3614.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	1.5	2.0	1.0	0.0	4.0	0.0
Merged-chr11-103981003-2	chr11	103980503	103981503	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007477, intron 3 of 4)	intron (NM_007477, intron 3 of 4)	14132.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25971812-2	chr15	25971312	25972312	+	581.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001277318, exon 7 of 7)	exon (NM_001277318, exon 7 of 7)	-12554.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80575725-2	chr10	80575225	80576225	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_078477, intron 1 of 1)	intron (NM_078477, intron 1 of 1)	1571.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3397725-2	chr8	3397225	3398225	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133962, intron 1 of 19)	RSINE1|SINE|B4	4717.0	NM_133962	102098.0	Mm.170461	NM_133962	ENSMUSG00000004568	Arhgef18	AI467246|D030053O22Rik	rho/rac guanine nucleotide exchange factor (GEF) 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-81722010-2	chr12	81721510	81722510	+	581.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001174107, exon 11 of 11)	3' UTR (NM_001174107, exon 11 of 11)	59160.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114660689-1	chr5	114660189	114661189	+	581.0	f1_c57bl6.idr	Intergenic	Intergenic	-2268.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	117.0	229.0	226.0	98.0	195.5	205.0
Merged-chr4-72984373-1	chr4	72983873	72984873	+	581.0	f1_balb.idr	Intergenic	Lx9|LINE|L1	-131739.0	NM_001199270	353204.0	Mm.317892	NM_001199270	ENSMUSG00000059343	Aldoart1	4921524E03Rik|Aldo1-ps|Aldo1-ps2|Aldoa-ps2	aldolase 1 A, retrogene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68982924-2	chr11	68982424	68983424	+	581.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7739.0	NM_001285441	57785.0	Mm.143774	NM_021329	ENSMUSG00000032892	Rangrf	2400006H24Rik|Mog1|Rangnrf	RAN guanine nucleotide release factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20149667-2	chr13	20149167	20150167	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	59160.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-26563470-2	chr19	26562970	26563970	+	581.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41690.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135867875-2	chr5	135867375	135868375	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021403, intron 11 of 14)	intron (NM_021403, intron 11 of 14)	-20044.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-105192278-2	chr14	105191778	105192778	+	581.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-14951.0	NM_134077	74213.0	Mm.474531	NM_134077	ENSMUSG00000022119	Rbm26	1700009P03Rik|AI447318|C230097K14Rik|C86225|MLZ-393|Pro1777|Se70-2	RNA binding motif protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-93823001-1	chr11	93822501	93823501	+	581.0	f1_balb.idr	Intergenic	Intergenic	62765.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	0.0	0.0	1.0	1.5	0.0	0.0
Merged-chr15-23591016-1	chr15	23590516	23591516	+	581.0	f0_balb.idr	Intergenic	Intergenic	554553.0	NM_001081299	320865.0	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l|Tg(GFAP-APOE_i4)1Hol	cadherin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-74292520-1	chr16	74292020	74293020	+	581.0	f1_balb.idr	intron (NM_001358493, intron 2 of 28)	intron (NM_001358493, intron 2 of 28)	49547.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.0	0.0	0.0	0.0	3.0	1.0
Merged-chr17-26572810-1	chr17	26572310	26573310	+	581.0	f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	L1M2|LINE|L1	11298.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0.0	0.0	0.5	3.5	0.0	0.5
Merged-chr14-36969406-2	chr14	36968906	36969906	+	581.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027045)	promoter-TSS (NM_027045)	-642.0	NM_027045	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-38741208-2	chr9	38740708	38741708	+	581.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172767, exon 19 of 20)	exon (NM_172767, exon 19 of 20)	-11588.0	NM_146787	258783.0	Mm.131149	NM_146787	ENSMUSG00000061039	Olfr920	MOR165-6	olfactory receptor 920	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128646497-2	chr10	128645979	128646979	+	581.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358536)	promoter-TSS (NM_001358536)	-486.0	NM_001358537	22781.0	Mm.358648	NM_011772	ENSMUSG00000002578	Ikzf4	A630026H08Rik|Eos|Zfpn1a4|Znfn1a4	IKAROS family zinc finger 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110926062-2	chr7	110925562	110926562	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194464, intron 5 of 20)	intron (NM_194464, intron 5 of 20)	20125.0	NM_010826	17540.0	Mm.250023	NM_010826	ENSMUSG00000005611	Mrvi1	BB115629|Irag|Ris1	MRV integration site 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-75100568-3	chr9	75100049	75101049	+	581.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010864, intron 1 of 40)	intron (NM_010864, intron 1 of 40)	29343.0	NM_010864	17918.0	Mm.3645	NM_010864	ENSMUSG00000034593	Myo5a	9630007J19Rik|AI413174|AI661011|Dbv|MVa|Myo5|MyoVA|Sev-1|d|d-120J|flail|flr	myosin VA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61380862-2	chr9	61380362	61381362	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083928, intron 4 of 19)	intron (NM_001083928, intron 4 of 19)	8496.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59019195-1	chr2	59018695	59019695	+	581.0	f0_balb.idr	intron (NM_001362394, intron 1 of 13)	intron (NM_001362394, intron 1 of 13)	141488.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-59221597-1	chr12	59221097	59222097	+	581.0	f1_balb.idr	Intergenic	MT2B1|LTR|ERVL	-2114.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	0.0	1.5	0.0	0.0	1.5	5.5
Merged-chr2-165854421-1	chr2	165853921	165854921	+	581.0	f1_c57bl6.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	3752.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	13.5	11.0	18.0	16.0	31.5	10.5
Merged-chr2-26723220-2	chr2	26722720	26723720	+	581.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8500.0	NM_001359164	105244099.0		NM_001359164		Gm39773	LCN16	predicted gene, 39773	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67639905-1	chr18	67639405	67640405	+	581.0	f1_c57bl6.idr	intron (NM_001357523, intron 2 of 11)	intron (NM_001357523, intron 2 of 11)	1450.0	NM_001357523	225659.0	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	0.0	6.0	1.5	1.5	2.5	0.0
Merged-chr6-146769890-1	chr6	146769390	146770390	+	581.0	f1_c57bl6.idr	intron (NM_172734, intron 9 of 13)	intron (NM_172734, intron 9 of 13)	-35640.0	NM_001289680	272322.0	Mm.333500	NM_172309	ENSMUSG00000040187	Arntl2	4632430A05Rik|BMAL2|CLIF|MOP9|bHLHe6	aryl hydrocarbon receptor nuclear translocator-like 2	protein-coding	2.0	9.5	4.0	0.0	5.5	1.0
Merged-chr3-127532618-1	chr3	127532118	127533118	+	581.0	f1_balb.idr	Intergenic	Intergenic	-12471.0	NR_146435	110008574.0		NR_146435		LOC110008574	-	miR-302 host gene	ncRNA	6.0	1.5	8.5	11.5	1.0	3.0
Merged-chr7-27470798-1	chr7	27470298	27471298	+	581.0	f1_balb.idr	Intergenic	Intergenic	-3042.0	NM_133210	170742.0	Mm.200120	NM_133210	ENSMUSG00000055200	Sertad3	AW124805|D1Mgi51|Rbt1|Sei3	SERTA domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131430259-3	chr2	131429761	131430761	+	581.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61601.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-60753193-1	chr19	60752693	60753693	+	581.0	f1_c57bl6.idr	Intergenic	Intergenic	-2794.0	NM_178421	332397.0	Mm.186390	NM_178421	ENSMUSG00000072437	Nanos1	NOS-1	nanos C2HC-type zinc finger 1	protein-coding	9.5	1.0	4.0	1.0	1.0	3.0
Merged-chr16-20677573-2	chr16	20677073	20678073	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145941, intron 6 of 32)	intron (NM_145941, intron 6 of 32)	4846.0	NM_001304432	208643.0	Mm.260256	NM_145941	ENSMUSG00000045983	Eif4g1	E030015G23Rik|eIF-4-gamma 1|eIF-4G 1|eIF-4G1|eIF4GI	eukaryotic translation initiation factor 4, gamma 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87959659-2	chr3	87959159	87960159	+	581.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10966.0	NM_007759	12904.0	Mm.4757	NM_007759	ENSMUSG00000004885	Crabp2	AI893628|Crabp-2|CrabpII	cellular retinoic acid binding protein II	protein-coding	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr9-109025566-2	chr9	109025066	109026066	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 10 of 13)	intron (NR_153430, intron 10 of 13)	-13001.0	NM_001284332	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3691158-2	chr7	3690658	3691658	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029934, intron 4 of 7)	intron (NM_029934, intron 4 of 7)	2367.0	NM_029934	77582.0	Mm.397541	NM_029934	ENSMUSG00000035596	Mboat7	5730589L02Rik|BB1|Leng4|Lpiat|Lpiat1|mBB1	membrane bound O-acyltransferase domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-130470431-2	chr10	130469931	130470931	+	581.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-14537.0	NM_001103365	625109.0	Mm.469845	NM_001103365	ENSMUSG00000092162	Vmn2r86	EG625109	vomeronasal 2, receptor 86	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147848362-3	chr5	147847906	147848906	+	581.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12222.0	NM_025624	66537.0	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67905920-1	chr18	67905420	67906420	+	581.0	f1_balb.idr	Intergenic	Intergenic	-27253.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	6.0	9.5	1.5	8.0	0.0	0.0
Merged-chr2-45754401-1	chr2	45753901	45754901	+	581.0	f0_balb.idr	Intergenic	Intergenic	57796.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21503575-2	chr9	21503075	21504075	+	581.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001253893, exon 18 of 21)	exon (NM_001253893, exon 18 of 21)	6319.0	NM_001324510	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-20049527-1	chr19	20049027	20050027	+	581.0	f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	341144.0	NM_010730	16952.0	Mm.248360	NM_010730	ENSMUSG00000024659	Anxa1	Anx-1|Anx-A1|C430014K04Rik|Lpc-1|Lpc1	annexin A1	protein-coding	0.0	0.0	1.0	0.0	0.0	4.0
Merged-chr19-4203052-1	chr19	4202552	4203552	+	581.0	f0_balb.idr	Intergenic	Intergenic	-1449.0	NM_011237	19367.0	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4307505-1	chr19	4307005	4308005	+	581.0	f1_balb.idr	Intergenic	Intergenic	-1283.0	NM_001290818	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	6.0	0.5	6.0	0.5	2.0	3.0
Merged-chr15-103499077-2	chr15	103498577	103499577	+	581.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153505)	TTS (NM_153505)	-3957.0	NM_008800	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54858920-2	chr11	54858420	54859420	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029327, intron 1 of 4)	ID_B1|SINE|B4	1671.0	NM_029327	75530.0	Mm.83578	NM_029327	ENSMUSG00000020268	Lyrm7	1700024C24Rik|9330147L21Rik	LYR motif containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124280180-1	chr6	124279680	124280680	+	581.0	f0_balb.idr	Intergenic	Intergenic	-24471.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-96151493-2	chr7	96150995	96151995	+	581.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-19749.0	NM_001310762	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136126510-1	chr4	136126010	136127010	+	581.0	f1_balb.idr	Intergenic	B4A|SINE|B4	-17312.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	26.5	40.5	17.0	9.0	14.5	9.5
Merged-chr16-65497197-1	chr16	65496697	65497697	+	581.0	f1_balb.idr	Intergenic	Intergenic	-23432.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	1.5	4.0	0.0	2.0	0.0	0.0
Merged-chr1-36613243-1	chr1	36612743	36613743	+	581.0	f0_balb.idr	intron (NM_201365, intron 6 of 9)	ID4_|SINE|ID	-19911.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128816494-2	chr2	128815994	128816994	+	581.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1809.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0.0	3.0	0.0	0.0	0.0	0.0
Merged-chr7-15989100-1	chr7	15988600	15989600	+	581.0	f0_balb.idr	exon (NM_001081418, exon 5 of 14)	exon (NM_001081418, exon 5 of 14)	10395.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-37438816-2	chr6	37438316	37439316	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	B4|SINE|B4	3332.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37702895-1	chr19	37702395	37703395	+	581.0	f0_balb.idr	Intergenic	Intergenic	5087.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-156196272-2	chr4	156195772	156196772	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021604, intron 1 of 35)	intron (NM_021604, intron 1 of 35)	1216.0	NM_021604	11603.0	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	1.0	0.0	2.5	7.5	0.0	1.0
Merged-chr6-102090635-2	chr6	102090135	102091135	+	581.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-175465.0	NR_131018	75893.0	Mm.2968	NR_131017	ENSMUSG00000107563	4930587E11Rik	4930523E13Rik|Gm44188	RIKEN cDNA 4930587E11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20395992-1	chr10	20395492	20396492	+	581.0	f0_balb.idr	Intergenic	Intergenic	48173.0	NM_027930	71804.0	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-144936125-1	chr7	144935625	144936625	+	581.0	f1_c57bl6.idr	intron (NM_007631, intron 3 of 4)	intron (NM_007631, intron 3 of 4)	3800.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	5.0	4.0	6.5	6.5	0.0	0.5
Merged-chr13-107795131-3	chr13	107794617	107795617	+	581.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	94947.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100198503-2	chr12	100198003	100199003	+	581.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009790)	promoter-TSS (NM_009790)	-932.0	NM_009790	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43771705-1	chr5	43771205	43772205	+	581.0	f0_balb.idr	intron (NM_178729, intron 2 of 8)	ORR1D2|LTR|ERVL-MaLR	10444.0	NM_001159963	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	2.0	0.0	1.5	1.0	1.0	1.5
Merged-chr8-35565756-1	chr8	35565256	35566256	+	581.0	f1_balb.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-22042.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	4.0	22.5	25.5	34.5	36.0	33.0
Merged-chr11-51565273-1	chr11	51564773	51565773	+	581.0	f0_balb.idr	intron (NM_153393, intron 15 of 28)	intron (NM_153393, intron 15 of 28)	-19484.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-63755054-1	chr11	63754554	63755554	+	581.0	f1_c57bl6.idr	Intergenic	Intergenic	167230.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	4.0	0.0	3.0	2.0	3.0	2.0
Merged-chr7-19410844-1	chr7	19410344	19411344	+	581.0	f1_balb.idr	promoter-TSS (NM_007710)	promoter-TSS (NM_007710)	-250.0	NM_007710	12715.0	Mm.2375	NM_007710	ENSMUSG00000030399	Ckm	CPK-M|Ckmm|M-CK|MCK	creatine kinase, muscle	protein-coding	0.0	1.0	0.0	0.0	0.5	2.5
Merged-chr7-72692372-2	chr7	72691872	72692872	+	581.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-385777.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	0.0	0.0	1.0	1.0	1.0	0.0
Merged-chr15-27663254-2	chr15	27662754	27663754	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001242424, intron 4 of 8)	(TG)n|Simple_repeat|Simple_repeat	18288.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26489604-1	chr17	26489104	26490104	+	581.0	f0_balb.idr	Intergenic	Intergenic	18868.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.5	0.5	0.0	1.0	0.0	0.0
Merged-chr5-139025500-2	chr5	139025000	139026000	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359099, intron 9 of 10)	intron (NM_001359099, intron 9 of 10)	-30547.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-121077830-1	chr6	121077330	121078330	+	581.0	f1_balb.idr	intron (NM_001270475, intron 1 of 31)	intron (NM_001270475, intron 1 of 31)	3797.0	NM_153396	194401.0	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	4.0	14.0	5.5	0.5	13.5	13.5
Merged-chr7-25709002-2	chr7	25708502	25709502	+	581.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	10051.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165622838-2	chr1	165622338	165623338	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	B3|SINE|B2	11703.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85243331-1	chr1	85242831	85243831	+	581.0	f1_balb.idr	Intergenic	Intergenic	27235.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-48457714-2	chr2	48457214	48458214	+	581.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-356395.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-10003611-2	chr1	10003111	10004111	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145692, intron 1 of 8)	MT2B|LTR|ERVL	5525.0	NR_110971	69312.0	Mm.386795	NM_027033	ENSMUSG00000025916	Ppp1r42	1700011J18Rik|4930418G15Rik|Lrrc67|TLRR	protein phosphatase 1, regulatory subunit 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54987062-2	chr11	54986562	54987562	+	581.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013472, exon 21 of 26)	exon (NM_013472, exon 21 of 26)	-24122.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71704632-1	chr17	71704132	71705132	+	581.0	f1_c57bl6.idr	intron (NM_177087, intron 10 of 19)	intron (NM_177087, intron 10 of 19)	31371.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	0.0	0.0	0.0	0.0	2.5	0.0
Merged-chr11-113683016-2	chr11	113682516	113683516	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138598, intron 1 of 2)	intron (NM_138598, intron 1 of 2)	1135.0	NM_138598	28081.0	Mm.351688	NM_138598	ENSMUSG00000041629	Fam104a	D11Wsu99e	family with sequence similarity 104, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84054287-2	chr12	84053787	84054787	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134246, intron 2 of 3)	intron (NM_134246, intron 2 of 3)	2136.0	NM_134246	171281.0	Mm.202331	NM_134246	ENSMUSG00000021228	Acot3	AW108394|PTE-Ia|Pte2a	acyl-CoA thioesterase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-28678717-1	chr19	28678217	28679217	+	581.0	f0_balb.idr	intron (NR_045330, intron 1 of 4)	intron (NR_045330, intron 1 of 4)	493.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-13469388-1	chr15	13468888	13469888	+	581.0	f0_balb.idr	Intergenic	Intergenic	-295713.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156066639-1	chr2	156066139	156067139	+	581.0	f1_c57bl6.idr	intron (NM_139151, intron 3 of 11)	intron (NM_139151, intron 3 of 11)	1426.0	NM_139151	245865.0	Mm.330713	NM_139151	ENSMUSG00000038180	Spag4	1700041K21Rik|MNCb-0953|Sun4|mKIAA4118	sperm associated antigen 4	protein-coding	7.5	0.5	3.5	2.0	8.5	4.0
Merged-chr19-10056022-2	chr19	10055522	10056522	+	581.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_021890, exon 9 of 12)	exon (NM_021890, exon 9 of 12)	14474.0	NM_021890	60527.0	Mm.253875	NM_021890	ENSMUSG00000024664	Fads3	AI464531	fatty acid desaturase 3	protein-coding	0.0	0.0	1.0	0.0	0.0	2.0
Merged-chr4-27442273-1	chr4	27441773	27442773	+	581.0	f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-736824.0	NR_040656	75360.0	Mm.67233	NR_040656	ENSMUSG00000086257	4930548K13Rik	-	RIKEN cDNA 4930548K13 gene	ncRNA	1.5	2.0	2.0	6.5	0.0	2.0
Merged-chr8-22697653-2	chr8	22697153	22698153	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159774, intron 2 of 21)	intron (NM_001159774, intron 2 of 21)	8930.0	NM_010546	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43683777-2	chr7	43683277	43684277	+	581.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-6641.0	NM_174866	317653.0	Mm.247377	NM_174866	ENSMUSG00000044737	Klk14	GK14	kallikrein related-peptidase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98708802-3	chr10	98708312	98709312	+	581.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-205830.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39084400-1	chr6	39083900	39084900	+	581.0	f0_balb.idr	3' UTR (NM_011539, exon 13 of 13)	3' UTR (NM_011539, exon 13 of 13)	-16814.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25394270-2	chr14	25393770	25394770	+	581.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64915.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134929429-1	chr4	134928929	134929929	+	581.0	f0_c57.idr	Intergenic	Intergenic	-1551.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151346215-2	chr1	151345715	151346715	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039511, intron 1 of 7)	intron (NM_001039511, intron 1 of 7)	1717.0	NM_001039511	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122233095-2	chr5	122232595	122233595	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359454, intron 3 of 7)	intron (NM_001359454, intron 3 of 7)	22808.0	NM_028752	74096.0	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	0.0	0.0	0.0	0.5	1.0	0.0
Merged-chr3-55120651-2	chr3	55120151	55121151	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001144987, intron 2 of 8)	intron (NM_001144987, intron 2 of 8)	8485.0	NM_001144987	229285.0	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|Spart|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding	4.5	0.0	0.0	1.0	3.0	4.0
Merged-chr16-11520001-2	chr16	11519501	11520501	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 14 of 20)	intron (NM_028964, intron 14 of 20)	114353.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112811081-2	chr13	112810614	112811614	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008903, intron 1 of 5)	intron (NM_008903, intron 1 of 5)	10337.0	NM_008247	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	17.0	33.5	19.0	8.5	18.5	8.0
Merged-chr15-101328426-2	chr15	101327926	101328926	+	581.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35214.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131528968-1	chr1	131528468	131529468	+	581.0	f0_balb.idr	intron (NM_175382, intron 1 of 3)	intron (NM_175382, intron 1 of 3)	1065.0	NM_175382	108900.0	Mm.31278	NM_175382	ENSMUSG00000055184	Fam72a	2700049P18Rik|P17	family with sequence similarity 72, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66238442-1	chr5	66237942	66238942	+	581.0	f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-21456.0	NM_001302833	70918.0	Mm.23166	NM_027602	ENSMUSG00000029206	Nsun7	4921525L17Rik	NOL1/NOP2/Sun domain family, member 7	protein-coding	0.5	5.0	0.5	0.0	0.0	0.0
Merged-chr2-148731390-2	chr2	148730890	148731890	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019632, intron 1 of 10)	intron (NM_019632, intron 1 of 10)	1030.0	NM_019632	17957.0	Mm.274308	NM_019632	ENSMUSG00000027438	Napb	Brp14|E161|I47|SNARE|b-SNAP	N-ethylmaleimide sensitive fusion protein attachment protein beta	protein-coding	9.0	24.5	16.5	6.5	42.0	27.0
Merged-chr2-27712305-2	chr2	27711805	27712805	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	1722.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51215607-2	chr3	51215107	51216107	+	581.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8840.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99928429-2	chr10	99927929	99928929	+	581.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-87392.0	NM_001347156	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99496019-1	chr9	99495519	99496519	+	581.0	f0_balb.idr	intron (NM_028768, intron 18 of 21)	intron (NM_028768, intron 18 of 21)	25598.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155244390-2	chr1	155243890	155244890	+	581.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	85687.0	NM_021433	58244.0	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103345225-2	chr14	103344725	103345725	+	580.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_207215, intron 1 of 84)	intron (NM_207215, intron 1 of 84)	1575.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80907846-2	chr10	80907346	80908346	+	580.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010722, intron 2 of 11)	intron (NM_010722, intron 2 of 11)	-1434.0	NM_001347140	16907.0	Mm.7362	NM_010722	ENSMUSG00000062075	Lmnb2	-	lamin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118447422-2	chr7	118446922	118447922	+	580.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362179, intron 1 of 7)	intron (NM_001362179, intron 1 of 7)	800.0	NM_001362179	110058.0	Mm.156558	NM_138649	ENSMUSG00000058420	Syt17	Bk|sytXVII	synaptotagmin XVII	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8859316-2	chr19	8858816	8859816	+	580.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8548.0	NM_001013019	68852.0	Mm.265792	NM_001013019	ENSMUSG00000071656	Lrrn4cl	1110067I12Rik	LRRN4 C-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-40559975-2	chr18	40559475	40560475	+	580.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	301614.0	NM_026135	383348.0	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102175999-3	chr12	102175506	102176506	+	580.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172152, intron 2 of 16)	intron (NM_172152, intron 2 of 16)	47279.0	NM_172152	238384.0	Mm.312448	NM_172152	ENSMUSG00000041771	Slc24a4	A930002M03Rik|AW492432|NCKX4	solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	protein-coding	0.0	2.0	0.0	8.5	2.5	0.0
Merged-chr13-55063480-3	chr13	55062981	55063981	+	580.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_121592, intron 6 of 13)	intron (NR_121592, intron 6 of 13)	30925.0	NM_001359757	20184.0	Mm.259301	NM_011307	ENSMUSG00000025878	Uimc1	9430016E08Rik|D330018D10Rik|D630032M02Rik|RIP110|Rxrip110	ubiquitin interaction motif containing 1	protein-coding	0.5	0.0	1.5	0.0	0.0	0.0
Merged-chr6-122934536-3	chr6	122934046	122935046	+	580.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_199311)	TTS (NM_199311)	12698.0	NM_199311	269799.0	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115276262-1	chr5	115275762	115276762	+	580.666687	f1_balb.idr	Intergenic	B3|SINE|B2	-3367.0	NM_001302449	50849.0	Mm.30051	NM_016698	ENSMUSG00000041740	Rnf10	AA675014|RIE2|mKIAA0262	ring finger protein 10	protein-coding	1.0	1.0	0.0	0.5	5.5	3.5
Merged-chr2-16111406-3	chr2	16110923	16111923	+	580.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310455, intron 32 of 38)	RLTR26_Mus|LTR|ERVK	-244881.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65864882-3	chr17	65864393	65865393	+	580.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198949, intron 2 of 9)	intron (NM_001198949, intron 2 of 9)	20030.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	0.0	0.5	0.0	0.0	0.5	0.0
Merged-chr1-4858944-2	chr1	4858444	4859444	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159751, intron 1 of 9)	intron (NM_001159751, intron 1 of 9)	616.0	NM_001159751	21399.0	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117699458-2	chr5	117698958	117699958	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 10 of 19)	intron (NM_001312914, intron 10 of 19)	-167381.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73996519-2	chr7	73996019	73997019	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009181, intron 1 of 5)	MTD|LTR|ERVL-MaLR	17163.0	NM_009181	20450.0	Mm.4954	NM_009181	ENSMUSG00000025789	St8sia2	AI323367|ST8SiaII|STX|Siat8b	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44846659-2	chr7	44846159	44847159	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042655, intron 4 of 16)	intron (NM_001042655, intron 4 of 16)	2420.0	NM_001042655	233204.0	Mm.27567	NM_144924	ENSMUSG00000038520	Tbc1d17	BC017607	TBC1 domain family, member 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117420949-2	chr8	117420449	117421449	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 5 of 20)	intron (NM_028941, intron 5 of 20)	-32074.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-41367757-2	chr3	41367246	41368246	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125453.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0.0	0.0	0.0	0.0	8.0	0.0
Merged-chr8-79031155-2	chr8	79030655	79031655	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 1 of 14)	LFSINE_Vert|SINE|tRNA	2718.0	NM_178267	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-89549069-2	chr1	89548569	89549569	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	94258.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-15056951-2	chr2	15056451	15057451	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029466, intron 1 of 5)	intron (NM_029466, intron 1 of 5)	1589.0	NM_029466	75869.0	Mm.174068	NM_029466	ENSMUSG00000017418	Arl5b	4930587A11Rik|AW146430|Arl8	ADP-ribosylation factor-like 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5275644-2	chr17	5275144	5276144	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 6 of 19)	intron (NM_001085355, intron 6 of 19)	143123.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4195058-2	chr8	4194558	4195558	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346730, intron 10 of 19)	B1_Mur3|SINE|Alu	22254.0	NM_207203	73072.0	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	0.0	0.0	0.0	3.0	0.0	1.0
Merged-chr16-13464268-2	chr16	13463768	13464768	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4593.0	NR_153791	102635495.0		NR_153791		Gm32817	Gm45563	predicted gene, 32817	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82691114-2	chr18	82690614	82691614	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177832, intron 1 of 29)	(CA)n|Simple_repeat|Simple_repeat	1620.0	NM_177832	329002.0	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20168393-2	chr11	20167893	20168893	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33019.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46472291-2	chr8	46471791	46472791	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007981, intron 1 of 20)	intron (NM_007981, intron 1 of 20)	1254.0	NM_007981	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-58324225-2	chr10	58323725	58324725	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026148, intron 1 of 9)	Charlie1|DNA|hAT-Charlie	678.0	NM_026148	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-195205108-2	chr1	195204608	195205608	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-28393.0	NM_007758	12902.0	Mm.235387	NM_007758	ENSMUSG00000026616	Cr2	C3DR|CD21|CD35|Cr-1|Cr-2|Cr1	complement receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79883349-1	chr3	79882849	79883849	+	580.5	f0_balb.idr	Intergenic	Intergenic	-2581.0	NM_133187	68659.0	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	0.0	0.0	2.0	9.0	6.5	0.0
Merged-chr12-12226573-1	chr12	12226073	12227073	+	580.5	f1_balb.idr	Intergenic	Intergenic	-35566.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	41.0	100.0	71.0	52.0	104.0	49.5
Merged-chr4-151818878-2	chr4	151818378	151819378	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195565, intron 3 of 3)	intron (NM_001195565, intron 3 of 3)	42890.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152898958-2	chr1	152898458	152899458	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160257, intron 1 of 23)	intron (NM_001160257, intron 1 of 23)	3687.0	NM_001359257	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3763963-2	chr4	3763463	3764463	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	48999.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-131513496-2	chr6	131512979	131513979	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27073.0	NM_001347484	102638913.0		NM_001347484	ENSMUSG00000095577	LOC102638913	-	otolin-1-like	protein-coding	6.5	1.5	1.5	0.0	0.0	4.0
Merged-chr3-136341755-2	chr3	136341255	136342255	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-15689.0	NM_001033350	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	0.0	0.0	0.0	0.0	5.0	0.0
Merged-chr2-49742626-2	chr2	49742126	49743126	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008449, intron 19 of 25)	intron (NM_008449, intron 19 of 25)	-45060.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46552891-2	chr8	46552391	46553391	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027973, intron 1 of 12)	B1_Mus1|SINE|Alu	822.0	NM_027973	71876.0	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-140764299-2	chr6	140763799	140764799	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137414.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75762042-2	chr2	75761542	75762542	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-57379.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	2.0	14.0	2.0	0.0	4.5	0.0
Merged-chr19-5571350-2	chr19	5570850	5571850	+	580.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033448)	TTS (NM_001033448)	3326.0	NM_001033448	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61207089-2	chr10	61206589	61207589	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081127, intron 16 of 21)	intron (NM_001081127, intron 16 of 21)	31827.0	NM_023064	65971.0	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118732628-2	chr9	118732128	118733128	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	20936.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	1.5	13.5	2.0	3.0	0.0	5.0
Merged-chr14-15084002-2	chr14	15083502	15084502	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	263187.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-13221505-2	chr17	13221005	13222005	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013741, intron 1 of 2)	Lx5|LINE|L1	317.0	NM_013741	27263.0	Mm.371809	NM_013741	ENSMUSG00000073458	Smok2a	Smok2	sperm motility kinase 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115813157-2	chr11	115812657	115813657	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080643, intron 1 of 19)	intron (NM_080643, intron 1 of 19)	435.0	NM_080643	140721.0	Mm.383737	NM_080643	ENSMUSG00000034471	Caskin2	1600028L06Rik|mKIAA1139	CASK-interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101428524-2	chr7	101428024	101429024	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008548, intron 1 of 30)	intron (NM_001008548, intron 1 of 30)	6833.0	NR_152192	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-83615761-2	chr2	83615261	83616261	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-28817.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75201149-2	chr10	75200649	75201649	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10924.0	NM_153406	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136858444-1	chr6	136857944	136858944	+	580.5	f0_balb.idr	promoter-TSS (NM_026639)	promoter-TSS (NM_026639)	-844.0	NM_026639	109978.0	Mm.31840	NM_026639	ENSMUSG00000030217	Art4	4432404K01Rik|ARTC4|DO|DOK1	ADP-ribosyltransferase 4	protein-coding	4.5	1.0	5.0	0.0	11.0	6.0
Merged-chr2-154612481-2	chr2	154611981	154612981	+	580.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199304)	promoter-TSS (NM_199304)	-887.0	NM_199304	228807.0	Mm.103555	NM_199304	ENSMUSG00000059842	Zfp341	Znf341	zinc finger protein 341	protein-coding	7.5	0.0	1.5	4.5	0.0	3.0
Merged-chr2-164822439-2	chr2	164821939	164822939	+	580.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028028)	promoter-TSS (NM_028028)	-247.0	NM_028028	71971.0	Mm.161149	NM_028028	ENSMUSG00000017764	Zswim1	2410003H12Rik|AI850991|BB046916	zinc finger SWIM-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4872265-2	chr16	4871765	4872765	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7586.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134583704-2	chr5	134583204	134584204	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020022, intron 1 of 10)	PB1D9|SINE|Alu	1014.0	NM_020022	19718.0	Mm.332739	NM_020022	ENSMUSG00000023104	Rfc2	2610008M13Rik|40kDa|AI326953|Recc2	replication factor C (activator 1) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46313173-2	chr19	46312673	46313673	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028627, intron 17 of 17)	intron (NM_028627, intron 17 of 17)	7243.0	NM_001177370	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93890537-2	chr16	93890037	93891037	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028083, intron 5 of 13)	intron (NM_028083, intron 5 of 13)	6636.0	NM_028083	110749.0	Mm.274222	NM_028083	ENSMUSG00000022945	Chaf1b	2600017H24Rik|C76145|CAF-I p60|CAF-Ip60|CAF1|CAF1A|CAF1P60|MPHOSPH7	chromatin assembly factor 1, subunit B (p60)	protein-coding	2.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130854695-2	chr5	130854195	130855195	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	405903.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150230650-2	chr4	150230150	150231150	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6547.0	NM_023119	13806.0	Mm.70666	NM_023119	ENSMUSG00000063524	Eno1	0610008I15|AL022784|Eno-1|MBP-1	enolase 1, alpha non-neuron	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32601562-2	chr11	32601026	32602026	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 10 of 18)	intron (NM_009288, intron 10 of 18)	-41029.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	5.5	5.5	5.0	2.5	6.0	3.5
Merged-chr16-10936876-2	chr16	10936376	10937376	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22079.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55011980-2	chr14	55011479	55012479	+	580.5	f0_balb.idr|f1_balb.idr	Intergenic	(TTTA)n|Simple_repeat|Simple_repeat	-3475.0	NM_026890	68966.0	Mm.21214	NM_026890	ENSMUSG00000022204	Ngdn	1500001L15Rik|Ngd|neuroguidin	neuroguidin, EIF4E binding protein	protein-coding	0.0	0.0	3.0	11.0	6.0	3.5
Merged-chr3-9947491-2	chr3	9946991	9947991	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65094.0	NM_001272097	16592.0	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	0.0	11.0	1.5	0.0	0.5	2.0
Merged-chr1-39614160-2	chr1	39613660	39614660	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36813.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-29020918-2	chr15	29020418	29021418	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	692486.0	NR_039542	100628607.0		NR_039542	ENSMUSG00000092639	Mir3964	mmu-mir-3964|mu-mir-3964	microRNA 3964	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10709018-2	chr19	10708518	10709518	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361959, intron 2 of 3)	B3A|SINE|B2	8250.0	NM_001361964	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76392314-2	chr12	76391814	76392814	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-11862.0	NM_001002012	15512.0	Mm.296181	NM_008301	ENSMUSG00000059970	Hspa2	70kDa|HSP70.2|HSP70A2|Hsp70-2	heat shock protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75157837-2	chr11	75157337	75158337	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 16 of 18)	intron (NM_001002764, intron 16 of 18)	10315.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0.0	2.5	0.5	0.0	2.5	0.5
Merged-chr10-54136901-2	chr10	54136401	54137401	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	60979.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67222523-2	chr10	67222023	67223023	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 8 of 25)	intron (NM_207221, intron 8 of 25)	36773.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-140206784-2	chr6	140206284	140207284	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44A|LTR|ERVK	165259.0	NM_007605	12344.0	Mm.12817	NM_007605	ENSMUSG00000041791	Capza3	510-4|Cappa3|Gsg3|Tex8|repro32	capping protein (actin filament) muscle Z-line, alpha 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35382481-2	chr17	35381981	35382981	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001143689, intron 3 of 5)	B1_Mm|SINE|Alu	2864.0	NM_001143689	15015.0	Mm.464284	NM_001143689	ENSMUSG00000035929	H2-Q4	H-2Q4|H2-Gs10|Qa-4|Qa4|Qat-4|Qb-1|Qb1	histocompatibility 2, Q region locus 4	protein-coding	0.0	0.0	3.5	0.0	3.0	0.0
Merged-chr15-74675172-2	chr15	74674672	74675672	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2602.0	NM_018790	11838.0	Mm.491310	NM_018790	ENSMUSG00000022602	Arc	Arc3.1|C86064|arg3.1|mArc	activity regulated cytoskeletal-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144224696-2	chr2	144224196	144225196	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCa|LINE|L1	-35406.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7580831-1	chr19	7580331	7581331	+	580.5	f0_balb.idr	intron (NM_001362425, intron 4 of 4)	intron (NM_001362425, intron 4 of 4)	23346.0	NM_001362425	225845.0	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	AdPLA|C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6972493-2	chr19	6971993	6972993	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2555.0	NM_008889	18938.0	Mm.140	NM_008889	ENSMUSG00000056612	Ppp1r14b	AOM172|PHI-1|PLCB3N|Png	protein phosphatase 1, regulatory (inhibitor) subunit 14B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27624361-2	chr17	27623861	27624861	+	580.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019837)	promoter-TSS (NM_019837)	-909.0	NM_019837	56409.0	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	0.0	0.0	0.0	0.0	1.5	0.0
Merged-chr9-110387322-2	chr9	110386822	110387822	+	580.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081043, exon 20 of 25)	exon (NM_001081043, exon 20 of 25)	20888.0	NM_001081043	104831.0	Mm.335477	NM_001081043	ENSMUSG00000036057	Ptpn23	AI462446|PTP-TD14	protein tyrosine phosphatase, non-receptor type 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19063657-2	chr7	19063157	19064157	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159671, intron 2 of 4)	B2_Mm2|SINE|B2	8970.0	NM_001159671	83434.0	Mm.84435	NM_031255	ENSMUSG00000040866	Rsph6a	RSP4|Rshl1	radial spoke head 6 homolog A (Chlamydomonas)	protein-coding	1.5	1.5	0.0	1.5	1.5	0.0
Merged-chr16-57030228-2	chr16	57029728	57030728	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_LTR|LTR|ERV1	41118.0	NM_001358101	69457.0	Mm.58105	NM_183281	ENSMUSG00000046748	Tmem45a2	2310005G13Rik	transmembrane protein 45A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-61659635-2	chr11	61659135	61660135	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027817, intron 1 of 4)	intron (NM_027817, intron 1 of 4)	6314.0	NM_027817	71520.0	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-37957443-2	chr3	37956943	37957943	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040559, intron 2 of 3)	ORR1E|LTR|ERVL-MaLR	58630.0	NR_040559	626410.0	Mm.389417	NR_040559	ENSMUSG00000106461	Gm20755	-	predicted gene, 20755	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116334138-2	chr9	116333638	116334638	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	144958.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78455474-2	chr11	78454974	78455974	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-10227.0	NM_026740	52466.0	Mm.131618	NM_026740	ENSMUSG00000020829	Slc46a1	1110002C08Rik|D11Ertd18e|HCP1|Pcft	solute carrier family 46, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24323341-2	chr5	24322841	24323841	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013569, intron 9 of 14)	intron (NM_013569, intron 9 of 14)	6250.0	NM_001294162	16511.0	Mm.6539	NM_013569	ENSMUSG00000038319	Kcnh2	AI326795|ERG1|LQT|Lqt2|M-erg|Merg1|merg1a|merg1b	potassium voltage-gated channel, subfamily H (eag-related), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66989079-2	chr9	66988579	66989579	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13595.0	NM_030717	80907.0	Mm.157882	NM_030717	ENSMUSG00000032370	Lactb	LACT-1|Lact1|Mrpl56	lactamase, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-33213129-2	chr15	33212629	33213629	+	580.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_018755, exon 3 of 9)	exon (NM_018755, exon 3 of 9)	130000.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-99307777-2	chr11	99307271	99308271	+	580.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15170.0	NM_133730	70810.0	Mm.268173	NM_133730	ENSMUSG00000035831	Krt25	4631426H08Rik|Ka38|Krt25a|mIRSa1	keratin 25	protein-coding	2.0	6.5	0.0	14.0	9.0	0.0
Merged-chr8-5640350-2	chr8	5639850	5640850	+	580.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-535063.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64968998-3	chr5	64968488	64969488	+	580.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-1087.0	NM_026667	68303.0	Mm.258545	NM_026667	ENSMUSG00000029185	Fam114a1	1190001N04Rik|9130005N14Rik|Noxp20	family with sequence similarity 114, member A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144678557-3	chr3	144678037	144679037	+	580.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41798.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.0	0.0	5.0	6.5	16.5	6.0
Merged-chr18-87288189-2	chr18	87287689	87288689	+	580.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	575878.0	NM_001361145	12405.0	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79998135-2	chr10	79997635	79998635	+	580.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_013850, exon 3 of 46)	exon (NM_013850, exon 3 of 46)	520.0	NM_013850	27403.0	Mm.103351	NM_013850	ENSMUSG00000035722	Abca7	ABCX|Abc51	ATP-binding cassette, sub-family A (ABC1), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19046160-2	chr10	19045660	19046660	+	580.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30750.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.0	3.5	4.5	0.0	3.5	4.5
Merged-chr16-89904293-2	chr16	89903793	89904793	+	580.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 3 of 27)	L1MEf|LINE|L1	56534.0	NM_009384	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167737193-2	chr2	167736693	167737693	+	580.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	46016.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83029412-2	chr6	83028912	83029912	+	580.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 9 of 9)	intron (NM_033079, intron 9 of 9)	4059.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	4.0	15.0	11.0	10.5	40.5	34.0
Merged-chr17-65615493-2	chr17	65614993	65615993	+	580.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1938.0	NM_013933	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9796226-2	chr3	9795726	9796726	+	580.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195031, intron 1 of 8)	intron (NM_001195031, intron 1 of 8)	37453.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55734855-2	chr14	55734355	55735355	+	580.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10829.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-37843153-2	chr18	37842653	37843653	+	580.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001305981)	TTS (NM_001305981)	11507.0	NR_105945	102465592.0		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr2-128794768-2	chr2	128794268	128795268	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 18 of 18)	intron (NM_008587, intron 18 of 18)	-23535.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	1.0	1.5	3.5	1.0	3.5	4.5
Merged-chr1-29805054-1	chr1	29804554	29805554	+	580.0	f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	383566.0	NR_105760	102465174.0		NR_105760	ENSMUSG00000099257	Mir6342	Gm27268|mmu-mir-6342	microRNA 6342	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108304708-1	chr9	108304208	108305208	+	580.0	f1_c57bl6.idr	intron (NM_001311156, intron 2 of 2)	B1_Mus1|SINE|Alu	1451.0	NM_133986	102791.0	Mm.24670	NM_133986	ENSMUSG00000039461	Tcta	9130410M22Rik|AW553637|C85065|Tctal	T cell leukemia translocation altered gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70964959-2	chr17	70964459	70965459	+	580.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25557.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81346353-2	chr7	81345853	81346853	+	580.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007755)	TTS (NM_007755)	-1119.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-34859079-2	chr9	34858579	34859579	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190912, intron 1 of 15)	MIR|SINE|MIR	-257649.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99098365-1	chr15	99097865	99098865	+	580.0	f0_balb.idr	Intergenic	CpG	-1119.0	NM_176835	72778.0	Mm.30544	NM_176835	ENSMUSG00000038009	Dnajc22	2810451A06Rik|AI506245	DnaJ heat shock protein family (Hsp40) member C22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-26646545-2	chr14	26646045	26647045	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007479, intron 1 of 5)	intron (NM_007479, intron 1 of 5)	8411.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82952738-1	chr15	82952238	82953238	+	580.0	f1_balb.idr	Intergenic	Intergenic	6558.0	NR_037241	100526477.0		NR_037241	ENSMUSG00000092751	Mir3080	mmu-mir-3080	microRNA 3080	ncRNA	0.0	4.5	3.0	0.0	0.0	0.0
Merged-chr6-54591869-2	chr6	54591369	54592369	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153573, intron 1 of 3)	intron (NM_153573, intron 1 of 3)	1259.0	NM_153573	231997.0	Mm.274693	NM_153573	ENSMUSG00000038074	Fkbp14	BC029109|FKBP-14|FKBP22	FK506 binding protein 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60866537-2	chr2	60866037	60867037	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	14901.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34011304-1	chr17	34010804	34011804	+	580.0	f1_balb.idr	Intergenic	Intergenic	-10957.0	NM_001347346	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	0.0	6.5	0.0	0.0	14.5	6.5
Merged-chr16-91735503-2	chr16	91735003	91736003	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	6132.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23898970-2	chr16	23898470	23899470	+	580.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8126.0	NM_009215	20604.0	Mm.2453	NM_009215	ENSMUSG00000004366	Sst	SOM|SRIF|SS|Smst	somatostatin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25292790-1	chr10	25292290	25293290	+	580.0	f1_balb.idr	intron (NM_018747, intron 1 of 7)	intron (NM_018747, intron 1 of 7)	6373.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	1.5	10.0	6.5	4.0	13.0	5.0
Merged-chr3-88535071-2	chr3	88534571	88535571	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029890, intron 1 of 1)	intron (NM_001029890, intron 1 of 1)	1311.0	NR_035434	100316808.0		NR_035434	ENSMUSG00000084728	Mir1905	Mirn1905|mmu-mir-1905	microRNA 1905	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23428392-2	chr13	23427892	23428892	+	580.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015492, exon 3 of 4)	non-coding (NR_015492, exon 3 of 4)	2625.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-140462564-2	chr6	140462064	140463064	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144920, intron 3 of 30)	intron (NM_144920, intron 3 of 30)	38465.0	NM_144920	109135.0	Mm.247670	NM_144920	ENSMUSG00000030231	Plekha5	2810431N21Rik|AI428202|AK129423|AMH-Cre|Ayu21-9|Gt(pU21)9Imeg|Pepp2|Tg(AMH-cre)1Flor	pleckstrin homology domain containing, family A member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118808590-1	chr9	118808090	118809090	+	580.0	f1_c57bl6.idr	intron (NM_001113514, intron 4 of 13)	intron (NM_001113514, intron 4 of 13)	96898.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.0	14.0	6.5	19.5	12.0	5.5
Merged-chr8-70709378-1	chr8	70708878	70709878	+	580.0	f1_c57bl6.idr	Intergenic	Intergenic	-9165.0	NM_001195253	100502950.0	Mm.52981	NM_001195253	ENSMUSG00000095026	Gm3336	100041434|2410018E23Rik	predicted gene 3336	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35845240-2	chr17	35844740	35845740	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001010833, intron 2 of 15)	intron (NM_001010833, intron 2 of 15)	3742.0	NM_001010833	240087.0	Mm.218511	NM_001010833	ENSMUSG00000061607	Mdc1	6820401C03|AA413496|Nfbd1|mKIAA0170	mediator of DNA damage checkpoint 1	protein-coding	0.0	3.5	0.5	0.0	8.0	0.0
Merged-chr16-11685424-2	chr16	11684924	11685924	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 18 of 20)	intron (NM_028964, intron 18 of 20)	-94278.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8825988-2	chr10	8825488	8826488	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	60082.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.0	2.5	1.5	0.0	1.0	1.0
Merged-chr1-11743103-2	chr1	11742603	11743603	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160369, intron 7 of 13)	intron (NM_001160369, intron 7 of 13)	328998.0	NM_001160371	320492.0	Mm.52021	NM_177173	ENSMUSG00000057715	A830018L16Rik	-	RIKEN cDNA A830018L16 gene	protein-coding	1.0	0.0	2.0	0.0	3.5	0.0
Merged-chr17-87254035-1	chr17	87253535	87254535	+	580.0	f1_balb.idr	TTS (NM_139295)	TTS (NM_139295)	11912.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	0.0	3.0	0.0	0.0	0.0	0.0
Merged-chr5-23440003-1	chr5	23439503	23440503	+	580.0	f0_balb.idr	intron (NM_026984, intron 1 of 25)	intron (NM_026984, intron 1 of 25)	5574.0	NM_026984	69188.0	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	12.0	6.5	3.0	1.5	19.5	4.5
Merged-chr14-20297667-2	chr14	20297191	20298191	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359869, intron 3 of 9)	intron (NM_001359869, intron 3 of 9)	3001.0	NR_153364	67725.0	Mm.317636	NM_026341	ENSMUSG00000021809	Nudt13	4933433B15Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122705200-2	chr7	122704700	122705700	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019430, intron 1 of 3)	B3|SINE|B2	33456.0	NM_019430	54376.0	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73638873-2	chr13	73638373	73639373	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009354, intron 6 of 15)	intron (NM_009354, intron 6 of 15)	11962.0	NM_001362388	21752.0	Mm.10109	NM_009354	ENSMUSG00000021611	Tert	EST2|TCS1|TP2|TR|TRT	telomerase reverse transcriptase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59970758-1	chr13	59970258	59971258	+	580.0	f0_balb.idr	Intergenic	Intergenic	-58953.0	NR_046142	328263.0	Mm.123405	NR_046142	ENSMUSG00000114531	A530065N20Rik	A530065N20	RIKEN cDNA A530046M15 gene	ncRNA	0.0	0.0	0.0	1.5	0.0	3.0
Merged-chr15-64086601-2	chr15	64086101	64087101	+	580.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001276462)	TTS (NM_001276462)	-26153.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	4.0	9.5	3.5	0.0	6.5	4.5
Merged-chr16-94522262-2	chr16	94521762	94522762	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 1 of 7)	RSINE1|SINE|B4	4367.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120550454-2	chr1	120549954	120550954	+	580.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45430.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0.0	0.0	0.0	5.0	0.0	0.0
Merged-chr2-154942223-2	chr2	154941723	154942723	+	580.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49317.0	NM_026030	67204.0	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	1.5	13.0	1.0	13.0	0.0	3.5
Merged-chr1-37505391-1	chr1	37504891	37505891	+	580.0	f0_balb.idr	intron (NM_173870, intron 2 of 15)	intron (NM_173870, intron 2 of 15)	-16786.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17525760-1	chr17	17525260	17526260	+	580.0	f1_c57bl6.idr	Intergenic	Intergenic	98729.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	0.0	10.5	1.5	4.5	13.0	0.0
Merged-chr13-24380805-1	chr13	24380305	24381305	+	580.0	f0_c57.idr	intron (NM_001284519, intron 2 of 17)	intron (NM_001284519, intron 2 of 17)	-34317.0	NM_007717	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-48443941-1	chr14	48443441	48444441	+	580.0	f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-2182.0	NM_001310584	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	5.0	0.0	3.0	1.0	0.0	0.5
Merged-chr2-91933302-2	chr2	91932802	91933802	+	580.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_138306, exon 31 of 31)	3' UTR (NM_138306, exon 31 of 31)	-1005.0	NM_010784	17242.0	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48342121-2	chr17	48341621	48342621	+	580.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	-4280.0	NM_031254	83433.0	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-154333804-2	chr3	154333316	154334316	+	580.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040387, exon 3 of 3)	non-coding (NR_040387, exon 3 of 3)	2995.0	NR_040387	99686.0	Mm.38082	NR_040387	ENSMUSG00000093738	AI606473	-	expressed sequence AI606473	ncRNA	0.0	1.5	1.0	7.0	5.0	5.5
Merged-chr9-119417368-1	chr9	119416868	119417868	+	580.0	f1_balb.idr	intron (NM_007397, intron 1 of 9)	intron (NM_007397, intron 1 of 9)	15190.0	NM_001313757	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	4.0	8.5	9.5	6.5	3.0	6.5
Merged-chr1-9997824-1	chr1	9997324	9998324	+	580.0	f1_balb.idr	intron (NR_110971, intron 4 of 6)	intron (NR_110971, intron 4 of 6)	11312.0	NR_110971	69312.0	Mm.386795	NM_027033	ENSMUSG00000025916	Ppp1r42	1700011J18Rik|4930418G15Rik|Lrrc67|TLRR	protein phosphatase 1, regulatory subunit 42	protein-coding	0.0	0.0	0.5	0.0	8.0	0.5
Merged-chr1-127372935-2	chr1	127372435	127373435	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 6 of 17)	B4A|SINE|B4	167949.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-19943990-2	chr11	19943490	19944490	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	19548.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110590688-2	chr12	110590188	110591188	+	580.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033340)	promoter-TSS (NR_033340)	-686.0	NR_033340	319786.0	Mm.129691	NR_033340		B930059L03Rik	-	RIKEN cDNA B930059L03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90482259-1	chr2	90481759	90482759	+	580.0	f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-3085.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.5	13.5	7.5	3.0	14.0	2.5
Merged-chr4-59262418-1	chr4	59261918	59262918	+	580.0	f0_balb.idr	intron (NR_105031, intron 2 of 3)	intron (NR_105031, intron 2 of 3)	2367.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	1.5	3.5	3.0	0.0	0.0	0.0
Merged-chr6-133904709-2	chr6	133904213	133905213	+	580.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51046.0	NM_010594	16483.0	Mm.13052	NM_010594	ENSMUSG00000032758	Kap	AW146435|FKSG22	kidney androgen regulated protein	protein-coding	2.5	0.0	0.5	3.0	0.0	4.0
Merged-chr14-30700399-1	chr14	30699899	30700899	+	580.0	f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-14450.0	NM_019460	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	6.5	1.5	4.0	0.0	0.0	6.5
Merged-chr8-12877415-2	chr8	12876915	12877915	+	580.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38478.0	NM_178076	17207.0	Mm.334413	NM_178076	ENSMUSG00000031442	Mcf2l	C130040G20Rik|Dbs|Ost|mKIAA0362	mcf.2 transforming sequence-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-88953751-1	chr11	88953251	88954251	+	580.0	f1_c57bl6.idr	intron (NM_029023, intron 1 of 12)	intron (NM_029023, intron 1 of 12)	1691.0	NM_029023	74617.0	Mm.34126	NM_029023	ENSMUSG00000000278	Scpep1	2410018F01Rik|4833411K15Rik|AI957256|Risc	serine carboxypeptidase 1	protein-coding	23.0	35.0	36.0	15.0	26.0	12.5
Merged-chr7-112257879-1	chr7	112257379	112258379	+	580.0	f1_c57bl6.idr	intron (NM_001193305, intron 2 of 25)	ORR1E|LTR|ERVL-MaLR	32043.0	NM_001193305	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	2.0	0.0	1.0	1.5	1.0	0.0
Merged-chr2-113491670-1	chr2	113491170	113492170	+	580.0	f0_balb.idr	intron (NM_001285459, intron 3 of 16)	CT-rich|Low_complexity|Low_complexity	50606.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	7.0	0.0	8.0	13.5	10.0	13.5
Merged-chr11-119264533-1	chr11	119264033	119265033	+	580.0	f1_c57bl6.idr	3' UTR (NM_175430, exon 19 of 19)	3' UTR (NM_175430, exon 19 of 19)	-3430.0	NM_001159324	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	0.0	0.5	0.5	0.0	7.5	0.5
Merged-chr7-144931696-1	chr7	144931196	144932196	+	580.0	f1_c57bl6.idr	TTS (NM_001347537)	TTS (NM_001347537)	8229.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	5.5	3.5	3.5	7.0	6.0	2.0
Merged-chr2-129363259-2	chr2	129362765	129363765	+	580.0	f0_c57.idr|f1_balb.idr	Intergenic	L1ME4b|LINE|L1	-6637.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	12.5	33.5	22.0	24.0	36.0	33.0
Merged-chr15-39967388-2	chr15	39966888	39967888	+	580.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045719, exon 3 of 3)	non-coding (NR_045719, exon 3 of 3)	4739.0	NR_045719	105976.0	Mm.394885	NR_045719		AU022793	-	expressed sequence AU022793	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19225865-1	chr7	19225365	19226365	+	580.0	f1_balb.idr	Intergenic	Intergenic	-2524.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	10.5	8.0	4.0	9.5	3.5	25.0
Merged-chr2-117210986-2	chr2	117210486	117211486	+	580.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	25859.0	NR_030440	732489.0		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35802458-1	chr8	35801958	35802958	+	580.0	f1_balb.idr	Intergenic	Intergenic	24101.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	0.5	0.0	5.0	0.0	4.5	0.0
Merged-chr12-33119206-2	chr12	33118706	33119706	+	580.0	f0_balb.idr|f1_c57bl6.idr	non-coding (NR_015602, exon 5 of 6)	non-coding (NR_015602, exon 5 of 6)	-26331.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	5.5	7.0	15.5	7.5	8.5	11.5
Merged-chr12-83989512-2	chr12	83989012	83990012	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134188, intron 1 of 2)	B2_Mm2|SINE|B2	1651.0	NM_134188	171210.0	Mm.371675	NM_134188	ENSMUSG00000021226	Acot2	AA571646|MTE-I|Mte1	acyl-CoA thioesterase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95088421-2	chr10	95087921	95088921	+	580.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57404.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21048067-1	chr14	21047567	21048567	+	580.0	f0_balb.idr	intron (NM_018829, intron 1 of 8)	PB1|SINE|Alu	4375.0	NM_018829	55946.0	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	4.5	0.0	1.5	4.0	3.0	3.5
Merged-chr17-26583038-1	chr17	26582538	26583538	+	580.0	f1_balb.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	21526.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0.0	1.5	0.0	0.0	4.0	4.0
Merged-chr6-29240227-2	chr6	29239727	29240727	+	580.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-23863.0	NM_001302934	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-40879494-1	chr17	40878994	40879994	+	580.0	f1_balb.idr	intron (NM_027834, intron 1 of 1)	intron (NM_027834, intron 1 of 1)	1064.0	NM_027834	71583.0	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding	18.5	45.5	59.0	5.5	1.0	4.0
Merged-chr7-27593787-2	chr7	27593282	27594282	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110208, intron 1 of 13)	intron (NM_001110208, intron 1 of 13)	2230.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	0.0	7.5	5.5	0.0	0.0	0.0
Merged-chr7-16042118-1	chr7	16041618	16042618	+	580.0	f1_c57bl6.idr	Intergenic	Intergenic	-29727.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126816202-2	chr4	126815702	126816702	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035525, intron 4 of 23)	intron (NM_001035525, intron 4 of 23)	62432.0	NM_001035526	100317.0	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20827680-1	chr10	20827180	20828180	+	580.0	f0_balb.idr	Intergenic	L2|LINE|L2	-102602.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108778334-1	chr8	108777834	108778834	+	580.0	f0_balb.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	63690.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	1.5	0.0	0.0	0.5	1.5	3.0
Merged-chr4-117188867-1	chr4	117188367	117189367	+	580.0	f0_c57.idr	Intergenic	Intergenic	-6243.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-54901910-2	chr1	54901410	54902410	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	24477.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83557757-2	chr11	83557257	83558257	+	580.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	20879.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-128358430-1	chr1	128357930	128358930	+	580.0	f1_c57bl6.idr	intron (NM_008567, intron 1 of 16)	B1_Mur4|SINE|Alu	1275.0	NM_001313695	17219.0	Mm.4933	NM_008567	ENSMUSG00000026355	Mcm6	ASP-l1|D1Wsu22e|Mcmd6	minichromosome maintenance complex component 6	protein-coding	5.0	10.5	29.0	14.0	7.0	7.0
Merged-chr2-28542970-2	chr2	28542470	28543470	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145836, intron 4 of 17)	intron (NM_001145836, intron 4 of 17)	9506.0	NM_001145836	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-46106391-2	chr10	46105891	46106891	+	580.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-138357.0	NR_028274	100302593.0		NR_028274	ENSMUSG00000095118	Snord14d	Gm23710	small nucleolar RNA, C/D box 14D	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139320411-2	chr5	139319911	139320911	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 1 of 10)	intron (NM_172723, intron 1 of 10)	5053.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103980093-2	chr3	103979593	103980593	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013629, intron 3 of 18)	intron (NM_013629, intron 3 of 18)	-11777.0	NR_030676	100125931.0	Mm.400392	NR_030676	ENSMUSG00000089998	Phtf1os	A130049A11Rik	putative homeodomain transcription factor 1, opposite strand	ncRNA	0.0	1.5	0.0	3.5	1.0	0.0
Merged-chr9-63755835-2	chr9	63755335	63756335	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	MIRc|SINE|MIR	2159.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122033545-1	chr7	122033045	122034045	+	580.0	f0_c57.idr	TTS (NM_026140)	TTS (NM_026140)	-12347.0	NM_028758	74105.0	Mm.29619	NM_028758	ENSMUSG00000030872	Gga2	1200007E24Rik|mKIAA1080	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148453554-2	chr5	148453054	148454054	+	580.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53650.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120708340-1	chr9	120707840	120708840	+	580.0	f0_balb.idr	Intergenic	Intergenic	131009.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-80339710-1	chr1	80339210	80340210	+	580.0	f0_balb.idr	intron (NM_016716, intron 1 of 15)	intron (NM_016716, intron 1 of 15)	980.0	NM_001313728	26554.0	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154854913-1	chr4	154854413	154855413	+	580.0	f0_balb.idr	Intergenic	Intergenic	-1287.0	NM_172878	242800.0	Mm.72944	NM_172878	ENSMUSG00000046637	Ttc34	4932418L02|B230396O12Rik	tetratricopeptide repeat domain 34	protein-coding	2.5	0.0	0.0	6.0	0.0	2.5
Merged-chr16-38397426-2	chr16	38396926	38397926	+	580.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_134102, exon 10 of 11)	exon (NM_134102, exon 10 of 11)	35236.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191276672-1	chr1	191276172	191277172	+	580.0	f1_balb.idr	Intergenic	Intergenic	41446.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118863337-2	chr10	118862841	118863841	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001014390, intron 2 of 2)	intron (NM_001014390, intron 2 of 2)	5562.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	20.0	39.5	40.0	43.0	42.0	56.5
Merged-chr19-34191281-2	chr19	34190781	34191781	+	580.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360716)	promoter-TSS (NM_001360716)	-948.0	NM_001360716	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87657828-1	chr16	87657328	87658328	+	580.0	f1_balb.idr	Intergenic	Intergenic	-41126.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.0	3.0	3.0	14.5	0.0	7.5
Merged-chr3-98337427-1	chr3	98336927	98337927	+	580.0	f1_c57bl6.idr	intron (NM_016966, intron 1 of 11)	intron (NM_016966, intron 1 of 11)	2542.0	NM_016966	236539.0	Mm.16898	NM_016966	ENSMUSG00000053398	Phgdh	3-PGDH|3PGDH|4930479N23|A10|PGAD|PGD|PGDH|SERA	3-phosphoglycerate dehydrogenase	protein-coding	0.0	5.5	0.0	7.5	0.0	2.0
Merged-chr5-96758336-1	chr5	96757836	96758836	+	580.0	f0_balb.idr	intron (NM_175473, intron 62 of 73)	intron (NM_175473, intron 62 of 73)	-35049.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	0.0	1.0	2.5	4.0	0.0	5.0
Merged-chr12-99333278-2	chr12	99332778	99333778	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 3 of 5)	B4A|SINE|B4	116796.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-15294596-1	chr9	15294096	15295096	+	580.0	f0_balb.idr	intron (NM_001359258, intron 3 of 7)	intron (NM_001359258, intron 3 of 7)	7011.0	NM_133732	70984.0	Mm.261842	NM_133732	ENSMUSG00000031938	4931406C07Rik	-	RIKEN cDNA 4931406C07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-18263659-1	chr14	18263159	18264159	+	580.0	f0_balb.idr	Intergenic	Intergenic	7322.0	NM_001359897	66480.0	Mm.2050	NM_025586	ENSMUSG00000012405	Rpl15	2510008H07Rik	ribosomal protein L15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-118483408-2	chr2	118482908	118483908	+	580.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3712.0	NM_009273	20813.0	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	0.0	5.0	2.5	0.0	2.5	4.0
Merged-chr14-73413667-2	chr14	73413167	73414167	+	580.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-28378.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95503673-2	chr10	95503173	95504173	+	580.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR31A_MM|LTR|ERVK	-1724.0	NM_001359477	67270.0	Mm.30008	NM_026065	ENSMUSG00000062981	Mrpl42	2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|L42mt|MRP-L31|MRP-L42|MRP-S32|PTD007|Rpml31|S32mt	mitochondrial ribosomal protein L42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123995736-2	chr5	123995236	123996236	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145070, intron 8 of 31)	intron (NM_145070, intron 8 of 31)	-1116.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84574972-2	chr10	84574472	84575472	+	580.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1975.0	NM_146008	216198.0	Mm.296142	NM_146008	ENSMUSG00000020034	Tcp11l2	E430026E19Rik	t-complex 11 (mouse) like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-108252663-1	chr11	108252163	108253163	+	580.0	f1_balb.idr	intron (NM_011101, intron 2 of 16)	MER21C|LTR|ERVL	91225.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0.0	0.0	0.0	0.0	1.5	4.0
Merged-chr3-89915395-2	chr3	89914895	89915895	+	580.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-2199.0	NM_010559	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61686528-1	chr8	61686028	61687028	+	580.0	f0_balb.idr	intron (NM_001293772, intron 9 of 21)	intron (NM_001293772, intron 9 of 21)	73570.0	NM_001293773	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77777754-2	chr18	77777254	77778254	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007505, intron 3 of 11)	intron (NM_007505, intron 3 of 11)	-3869.0	NM_001357531	225745.0	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-51915171-1	chr1	51914671	51915671	+	580.0	f1_c57bl6.idr	intron (NM_010863, intron 1 of 29)	intron (NM_010863, intron 1 of 29)	807.0	NM_001161817	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	5.5	2.5	0.5	0.5	0.0	3.5
Merged-chr10-115360817-2	chr10	115360317	115361317	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359472, intron 2 of 6)	PB1D7|SINE|Alu	1432.0	NM_001359470	67226.0	Mm.29647	NM_133683	ENSMUSG00000069520	Tmem19	2810428F02Rik|AW125171	transmembrane protein 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155074160-2	chr1	155073660	155074660	+	579.833313	f1_balb.idr|f1_c57bl6.idr	intron (NR_151545, intron 3 of 6)	intron (NR_151545, intron 3 of 6)	9104.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81634912-2	chr10	81634412	81635412	+	579.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_027480, exon 3 of 20)	exon (NM_027480, exon 3 of 20)	6372.0	NM_027480	70615.0	Mm.304382	NM_027480	ENSMUSG00000054708	Ankrd24	4631433D01Rik|5730519E19Rik|D10Bur2e	ankyrin repeat domain 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55588163-2	chr14	55587663	55588663	+	579.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029855, intron 8 of 10)	intron (NM_001029855, intron 8 of 10)	2858.0	NM_011190	19188.0	Mm.371573	NM_011190	ENSMUSG00000079197	Psme2	AA589371|AI788882|PA28b	proteasome (prosome, macropain) activator subunit 2 (PA28 beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148490008-2	chr2	148489508	148490508	+	579.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46473.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135407596-2	chr5	135407096	135408096	+	579.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_146001, exon 31 of 31)	3' UTR (NM_146001, exon 31 of 31)	-13050.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84948882-2	chr15	84948382	84949382	+	579.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033273, exon 10 of 10)	3' UTR (NM_001033273, exon 10 of 10)	2741.0	NR_037206	100526461.0		NR_037206	ENSMUSG00000080441	Mir1249	mir-1249|mmu-mir-1249	microRNA 1249	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76900659-2	chr15	76900159	76901159	+	579.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_025536, exon 2 of 2)	exon (NM_025536, exon 2 of 2)	718.0	NM_025536	66398.0	Mm.291716	NM_025536	ENSMUSG00000055041	Commd5	2310065H03Rik|AI854466|D15Ertd81e|Hcarg	COMM domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128455879-1	chr10	128455379	128456379	+	579.666687	f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2801.0	NR_106183	102465894.0		NR_106183	ENSMUSG00000098957	Mir8105	Gm27346|mmu-mir-8105	microRNA 8105	ncRNA	3.0	2.5	5.5	0.0	1.0	15.0
Merged-chr13-65127545-1	chr13	65127045	65128045	+	579.666687	f0_balb.idr	Intergenic	Intergenic	-14563.0	NM_133680	66631.0	Mm.239196	NM_133680	ENSMUSG00000038212	Mfsd14b	5730414C17Rik|AU045608|AW539692|Hiatl1	major facilitator superfamily domain containing 14B	protein-coding	3.0	6.5	5.0	0.5	4.5	1.0
Merged-chr19-5647360-2	chr19	5646860	5647860	+	579.625	f1_balb.idr|f1_c57bl6.idr	exon (NM_009045, exon 11 of 11)	exon (NM_009045, exon 11 of 11)	9870.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	2.0	1.0	2.0	4.0	1.0	1.5
Merged-chr5-54721166-2	chr5	54720666	54721666	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	371174.0	NR_038045	330086.0	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13	predicted gene 10440	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-45442743-2	chr8	45442243	45443243	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32124.0	NM_126166	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119919457-2	chr11	119918957	119919957	+	579.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001085498)	TTS (NM_001085498)	5647.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-89383142-2	chr7	89382642	89383642	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 1 of 14)	intron (NM_001360746, intron 1 of 14)	21080.0	NM_001360746	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-8244133-2	chr14	8243633	8244633	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053115, intron 11 of 14)	intron (NM_053115, intron 11 of 14)	14706.0	NM_001161667	93732.0	Mm.28700	NM_053115	ENSMUSG00000021751	Acox2	THCCox	acyl-Coenzyme A oxidase 2, branched chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44180446-2	chr9	44179946	44180946	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 2 of 15)	intron (NM_007619, intron 2 of 15)	45788.0	NM_001359530	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-82857862-2	chr17	82857362	82858362	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	220363.0	NR_045094	100503434.0	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99211360-2	chr5	99210860	99211860	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER30|DNA|hAT-Charlie	41567.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121351810-2	chr11	121351310	121352310	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025793, intron 1 of 9)	PB1D10|SINE|Alu	2637.0	NM_025793	66840.0	Mm.103986	NM_025793	ENSMUSG00000025173	Wdr45b	0610008N23Rik|AA408735|D16Bwg0193e|WIPI-3|Wdr45l	WD repeat domain 45B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118125876-2	chr7	118125376	118126376	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019419, intron 3 of 5)	intron (NM_019419, intron 3 of 5)	3749.0	NM_019419	54208.0	Mm.29924	NM_019419	ENSMUSG00000030654	Arl6ip1	AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding	0.0	0.0	1.0	0.0	1.5	0.0
Merged-chr10-78316817-2	chr10	78316317	78317317	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053014, intron 2 of 9)	intron (NM_053014, intron 2 of 9)	23390.0	NR_106119	102465765.0		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180023026-2	chr2	180022526	180023526	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1961.0	NM_177727	241846.0	Mm.21577	NM_177727	ENSMUSG00000039108	Lsm14b	9430078B04|BC040823	LSM family member 14B	protein-coding	0.0	0.0	2.5	1.5	0.0	0.5
Merged-chr7-110801298-2	chr7	110800798	110801798	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009667, intron 7 of 14)	B3A|SINE|B2	28694.0	NM_009667	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-13407900-2	chr2	13407400	13408400	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081084, intron 27 of 66)	intron (NM_001081084, intron 27 of 66)	83976.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58271870-2	chr15	58271370	58272370	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52299.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-151970582-2	chr2	151970082	151971082	+	579.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001289151, exon 2 of 2)	exon (NM_001289151, exon 2 of 2)	2812.0	NM_001289151	73847.0	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79523578-2	chr3	79523078	79524078	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	44101.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83068328-2	chr6	83067828	83068828	+	579.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009392)	TTS (NM_009392)	1897.0	NM_009392	21909.0	Mm.37	NM_009392	ENSMUSG00000068327	Tlx2	Enx|Hox11L.1|Hox11l1|NCX|Ncx1|Tlx1l1|Tlx1l2	T cell leukemia, homeobox 2	protein-coding	1.0	13.0	4.0	1.0	10.0	5.0
Merged-chr16-33961682-2	chr16	33961182	33962182	+	579.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009471, exon 3 of 6)	exon (NM_009471, exon 3 of 6)	5356.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46815108-2	chr8	46814608	46815608	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 5 of 7)	intron (NR_152560, intron 5 of 7)	75363.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8904370-2	chr12	8903870	8904870	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-16937.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32641072-2	chr11	32640572	32641572	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1483.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr5-72982072-2	chr5	72981572	72982572	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24832.0	NM_173403	231290.0	Mm.491387	NM_173403	ENSMUSG00000029219	Slc10a4	E130304D01	solute carrier family 10 (sodium/bile acid cotransporter family), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-72398389-2	chr2	72397889	72398889	+	579.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164791, exon 11 of 12)	exon (NM_001164791, exon 11 of 12)	-77830.0	NM_025866	66953.0	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114645949-2	chr6	114645449	114646449	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028835, intron 1 of 18)	ID_B1|SINE|B4	2852.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-83694235-2	chr12	83693748	83694748	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008943, intron 1 of 11)	B4A|SINE|B4	5685.0	NM_008943	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53159972-2	chr18	53159472	53160472	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16320.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	24.0	20.0	18.0	4.0	26.5	4.5
Merged-chr3-100446198-2	chr3	100445698	100446698	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19793.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86540057-2	chr11	86539557	86540557	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114334, intron 1 of 14)	PB1D7|SINE|Alu	4750.0	NM_028259	72508.0	Mm.394280	NM_028259	ENSMUSG00000020516	Rps6kb1	2610318I15Rik|4732464A07Rik|70kDa|AA959758|AI256796|AI314060|P70S6K1|S6K|S6K1|p70/85s6k|p70s6k	ribosomal protein S6 kinase, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127718395-2	chr7	127717895	127718895	+	579.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_198858)	TTS (NM_198858)	5458.0	NM_001301283	13019.0	Mm.389954	NM_007795	ENSMUSG00000042340	Ctf1	CT-1	cardiotrophin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-19410806-2	chr19	19410306	19411306	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-299610.0	NM_001043354	225998.0	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta|hstp	RAR-related orphan receptor beta	protein-coding	0.0	0.0	1.5	0.0	0.0	1.0
Merged-chr1-88563281-2	chr1	88562781	88563781	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11764.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-30905204-1	chr1	30904704	30905704	+	579.5	f0_balb.idr	Intergenic	Intergenic	-41948.0	NM_001081080	213109.0	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik	PHD finger protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-100288272-2	chr6	100287772	100288772	+	579.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019743)	promoter-TSS (NM_019743)	-914.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84708854-2	chr10	84708354	84709354	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027423, intron 23 of 27)	intron (NM_027423, intron 23 of 27)	-47194.0	NM_001024918	71137.0	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	10.5	1.0	3.5	8.0	0.0	3.0
Merged-chr2-91068932-2	chr2	91068432	91069432	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290765, intron 1 of 9)	intron (NM_001290765, intron 1 of 9)	1383.0	NM_026721	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-128699794-2	chr8	128699294	128700294	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010578, intron 1 of 15)	MTD|LTR|ERVL-MaLR	14140.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130170283-2	chr5	130169783	130170783	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1536.0	NM_001199059	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3891136-2	chr11	3890636	3891636	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026150, intron 1 of 2)	RLTR28|LTR|ERVL	3990.0	NM_026150	67430.0	Mm.347950	NM_026150	ENSMUSG00000020434	4921536K21Rik	AV043724	RIKEN cDNA 4921536K21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27030383-2	chr2	27029883	27030883	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2385.0	NM_001177627	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80125537-2	chr10	80125037	80126037	+	579.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011492, exon 3 of 10)	exon (NM_011492, exon 3 of 10)	9734.0	NM_001301854	20869.0	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102244038-2	chr11	102243538	102244538	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-4844.0	NM_153544	217216.0	Mm.247335	NM_153544	ENSMUSG00000034773	BC030867	-	cDNA sequence BC030867	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88445622-2	chr3	88445122	88446122	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013658, intron 10 of 14)	ORR1C2|LTR|ERVL-MaLR	-4671.0	NR_105978	102465611.0		NR_105978	ENSMUSG00000098655	Mir7011	Gm27677|mmu-mir-7011	microRNA 7011	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73456630-2	chr2	73456130	73457130	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	L2b|LINE|L2	-2741.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55889628-2	chr19	55889128	55890128	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-5693.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117065595-2	chr8	117065095	117066095	+	579.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029686, exon 7 of 43)	exon (NM_029686, exon 7 of 43)	16854.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-10928495-2	chr8	10927995	10928995	+	579.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030715)	promoter-TSS (NR_030715)	-38.0	NR_135302	665306.0	Mm.358758	NR_030715	ENSMUSG00000038917	3930402G23Rik	-	RIKEN cDNA 3930402G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170320370-2	chr2	170319870	170320870	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-35991.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77900951-2	chr10	77900451	77901451	+	579.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_145152, exon 2 of 2)	exon (NM_145152, exon 2 of 2)	1585.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-9882651-2	chr2	9882151	9883151	+	579.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_040511)	TTS (NR_040511)	1405.0	NR_024257	381347.0	Mm.441450	NR_024257		4930412O13Rik	Gm10853	RIKEN cDNA 4930412O13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126567877-2	chr8	126567377	126568377	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Eulor6E|DNA?|DNA?	25559.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.0	0.0	0.5	0.0	4.0	2.0
Merged-chr5-31453891-2	chr5	31453391	31454391	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360000, intron 2 of 12)	B1F2|SINE|Alu	1455.0	NM_001360000	269639.0	Mm.259127	NM_172993	ENSMUSG00000062761	Zfp512	2500002M11Rik|AI450173|D230008H22|Znf512	zinc finger protein 512	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77921102-2	chr15	77920602	77921602	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019913, intron 3 of 3)	intron (NM_019913, intron 3 of 3)	7892.0	NM_019913	56551.0	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-74722634-2	chr15	74722134	74723134	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198607, intron 1 of 1)	intron (NM_198607, intron 1 of 1)	1400.0	NM_198607	223626.0	Mm.268603	NM_198607	ENSMUSG00000056665	Them6	4930572J05Rik	thioesterase superfamily member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95755649-2	chr3	95755149	95756149	+	579.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163618)	promoter-TSS (NM_001163618)	-672.0	NR_151588	71807.0	Mm.271754	NM_027931	ENSMUSG00000028107	Tars2	2610024N01Rik|AI429208|Tarsl1|thrRS	threonyl-tRNA synthetase 2, mitochondrial (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-59439608-2	chr14	59439108	59440108	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001320720, intron 1 of 13)	intron (NM_001320720, intron 1 of 13)	1272.0	NM_001320725	107303348.0		NM_001320725		Gm45935	Setdb2-phf11c	predicted gene, 45935	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129582447-2	chr4	129581959	129582959	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3879.0	NM_182783	230766.0	Mm.20377	NM_182783	ENSMUSG00000050493	Fam167b	SEC	family with sequence similarity 167, member B	protein-coding	5.5	15.5	5.0	0.5	3.0	1.5
Merged-chr3-17834904-2	chr3	17834400	17835400	+	579.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	39238.0	NR_029814	723950.0		NR_029814	ENSMUSG00000093073	Mir124a-2	Mirn124a-2|mir-124-2|mir-124a-2	microRNA 124a-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79735705-2	chr10	79735205	79736205	+	579.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172551)	TTS (NM_172551)	10876.0	NM_172551	216151.0	Mm.39001	NM_172551	ENSMUSG00000020329	Polrmt	1110018N15Rik|4932416K13	polymerase (RNA) mitochondrial (DNA directed)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118841696-2	chr9	118841196	118842196	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 7 of 13)	intron (NM_001113514, intron 7 of 13)	-84840.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44535621-2	chr13	44535121	44536121	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95894.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113987547-2	chr5	113987047	113988047	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198109, intron 2 of 14)	BGLII_B|LTR|ERVK	6210.0	NM_198109	231637.0	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot protein phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64597761-2	chr17	64597261	64598261	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3888.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33912120-2	chr17	33911620	33912620	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355704, intron 3 of 7)	intron (NM_001355704, intron 3 of 7)	2519.0	NM_001199733	13163.0	Mm.271809	NM_007829	ENSMUSG00000002307	Daxx	-	Fas death domain-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75699513-2	chr2	75699013	75700013	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132727, intron 1 of 1)	intron (NR_132727, intron 1 of 1)	5150.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr14-25754399-2	chr14	25753899	25754899	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 2 of 3)	intron (NM_001101433, intron 2 of 3)	14457.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42713366-1	chr19	42712866	42713866	+	579.5	f0_balb.idr	Intergenic	Intergenic	39409.0	NM_029011	74580.0	Mm.329858	NM_029011	ENSMUSG00000060224	Pyroxd2	3830409H07Rik|4833409A17Rik	pyridine nucleotide-disulphide oxidoreductase domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76606192-2	chr12	76605692	76606692	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013675, intron 23 of 35)	intron (NM_013675, intron 23 of 35)	-58267.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90558280-2	chr2	90557780	90558780	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	22367.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	32.0	112.0	66.5	29.5	117.0	35.5
Merged-chr7-135704399-2	chr7	135703899	135704899	+	579.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081117, exon 9 of 14)	exon (NM_001081117, exon 9 of 14)	11980.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43429317-2	chr4	43428817	43429817	+	579.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177377)	promoter-TSS (NM_177377)	-183.0	NM_001162381	329831.0	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56470028-2	chr17	56469528	56470528	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252455, intron 1 of 27)	intron (NM_001252455, intron 1 of 27)	6452.0	NM_001252455	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95896665-2	chr11	95896165	95897165	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008081, intron 1 of 10)	intron (NM_008081, intron 1 of 10)	18206.0	NM_008081	14422.0	Mm.340702	NM_008081	ENSMUSG00000013418	B4galnt2	AI593864|Dlb-1|Dlb1|Galg2|Galgt2|Ggm3|Igf2bp1	beta-1,4-N-acetyl-galactosaminyl transferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107017706-2	chr13	107017206	107018206	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008442, intron 1 of 21)	intron (NM_008442, intron 1 of 21)	4408.0	NM_001145779	16563.0	Mm.355686	NM_008442	ENSMUSG00000021693	Kif2a	C530030B14Rik|Kif2|Kns2|M-kinesin	kinesin family member 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61339548-2	chr10	61339048	61340048	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013753, intron 17 of 19)	intron (NM_013753, intron 17 of 19)	41712.0	NM_011073	18646.0	Mm.240313	NM_011073	ENSMUSG00000037202	Prf1	Pfn|Pfp|Prf-1	perforin 1 (pore forming protein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-44130145-2	chr17	44129645	44130645	+	579.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-24336.0	NM_001357996	224794.0	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90586981-2	chr3	90586481	90587481	+	579.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355600)	promoter-TSS (NM_001355600)	29.0	NM_001355600	20197.0	Mm.440044	NM_011310	ENSMUSG00000001021	S100a3	S100E	S100 calcium binding protein A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29148725-3	chr11	29148214	29149214	+	579.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027869, intron 18 of 27)	intron (NM_027869, intron 18 of 27)	17963.0	NM_027869	71701.0	Mm.211131	NM_027869	ENSMUSG00000020464	Pnpt1	1200003F12Rik|Old35|PNPase|Pnptl1	polyribonucleotide nucleotidyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52112425-3	chr3	52111938	52112938	+	579.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7432.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41932520-3	chr13	41932024	41933024	+	579.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66609.0	NR_033545	100038577.0	Mm.387093	NR_033545	ENSMUSG00000113856	Gm10790	-	predicted gene 10790	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43750514-3	chr13	43750011	43751011	+	579.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	33720.0	NR_046022	622552.0	Mm.375036	NR_046022	ENSMUSG00000110016	Gm20751	-	predicted gene, 20751	ncRNA	5.5	13.0	11.5	0.0	0.0	7.0
Merged-chr8-117501543-2	chr8	117501043	117502043	+	579.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 1 of 32)	intron (NM_172285, intron 1 of 32)	3268.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87434756-2	chr11	87434256	87435256	+	579.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	RMER17C|LTR|ERVK	7165.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105323365-2	chr8	105322865	105323865	+	579.25	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177449, exon 2 of 5)	5' UTR (NM_177449, exon 2 of 5)	2911.0	NM_177449	234684.0	Mm.381717	NM_177449	ENSMUSG00000041679	Lrrc29	A630024J02Rik|FBL9|FBXL9	leucine rich repeat containing 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170554684-2	chr1	170554184	170555184	+	579.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 1 of 9)	MLT2C1|LTR|ERVL	2426.0	NM_027528	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57178017-2	chr16	57177517	57178517	+	579.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001358434, exon 12 of 15)	exon (NM_001358434, exon 12 of 15)	-10685.0	NM_023175	52633.0	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-42714491-1	chr1	42713991	42714991	+	579.0	f0_balb.idr	Intergenic	Intergenic	-1037.0	NR_110495	66620.0	Mm.383631	NR_110495	ENSMUSG00000097063	Pantr2	2610207O16Rik|Pou3f3os2|linc-Brn1b	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60779514-2	chr18	60779003	60780003	+	579.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_020600)	TTS (NM_020600)	4907.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3100456-1	chr11	3099956	3100956	+	579.0	f1_balb.idr	Intergenic	GSAT_MM|Satellite|Satellite	-23565.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-116063983-2	chr2	116063483	116064483	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346047, intron 2 of 13)	intron (NM_001346047, intron 2 of 13)	636.0	NM_001346044	17536.0	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-122355651-1	chr9	122355151	122356151	+	579.0	f1_balb.idr	intron (NM_001359207, intron 1 of 4)	B4A|SINE|B4	4035.0	NM_026179	67469.0	Mm.280254	NM_026179	ENSMUSG00000032540	Abhd5	1300003D03Rik|2010002J10Rik|CDS|CGI-58|IECN5|NCIE2	abhydrolase domain containing 5	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr16-85174536-1	chr16	85174036	85175036	+	579.0	f1_balb.idr	promoter-TSS (NM_001198824)	promoter-TSS (NM_001198824)	-829.0	NM_001198826	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	11.5	4.0	2.0	5.5	9.0	1.0
Merged-chr16-10972612-1	chr16	10972112	10973112	+	579.0	f0_balb.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	20509.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-140789104-1	chr4	140788604	140789604	+	579.0	f1_balb.idr	intron (NM_011060, intron 14 of 15)	intron (NM_011060, intron 14 of 15)	-14901.0	NM_011061	18602.0	Mm.250358	NM_011061	ENSMUSG00000025330	Padi4	Pad4|Pdi4	peptidyl arginine deiminase, type IV	protein-coding	3.0	7.5	0.5	11.5	0.0	0.0
Merged-chr8-120187951-2	chr8	120187451	120188451	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10482.0	NM_001033980	436062.0	Mm.334852	NM_001033980	ENSMUSG00000042269	Fam92b	1700120B06Rik	family with sequence similarity 92, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102166849-1	chr2	102166349	102167349	+	579.0	f0_balb.idr	intron (NM_178886, intron 1 of 5)	intron (NM_178886, intron 1 of 5)	19611.0	NM_178886	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	0.0	0.5	0.0	5.5	0.0	0.0
Merged-chr12-47481497-2	chr12	47480997	47481997	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-662722.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10664648-1	chr17	10664148	10665148	+	579.0	f0_balb.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	175543.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-39745893-1	chr15	39745393	39746393	+	579.0	f0_balb.idr	promoter-TSS (NM_001289506)	promoter-TSS (NM_001289506)	-37.0	NM_001289506	75766.0	Mm.159563	NM_029422	ENSMUSG00000022303	Dcstamp	4833414I07Rik|DC-STAMP|FIND|Tm7sf4|mDC-STAMP	dendrocyte expressed seven transmembrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33847278-2	chr2	33846778	33847778	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 2 of 9)	intron (NM_175184, intron 2 of 9)	40668.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47898839-1	chr17	47898339	47899339	+	579.0	f1_c57bl6.idr	intron (NM_028767, intron 2 of 16)	intron (NM_028767, intron 2 of 16)	25793.0	NM_028767	74123.0	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	3.0	5.0	1.0	3.5	0.0	1.0
Merged-chr9-61290320-2	chr9	61289820	61290820	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045334, intron 2 of 4)	intron (NR_045334, intron 2 of 4)	3489.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32625868-1	chr11	32625368	32626368	+	579.0	f0_c57.idr	Intergenic	Intergenic	-16687.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0.0	0.0	0.5	4.5	0.0	1.5
Merged-chr19-5660298-1	chr19	5659798	5660798	+	579.0	f1_c57bl6.idr	intron (NM_001164481, intron 4 of 17)	intron (NM_001164481, intron 4 of 17)	3409.0	NM_001164482	20469.0	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	5.0	5.5	1.0	0.0	5.5	7.5
Merged-chr5-21529330-2	chr5	21528830	21529830	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199632, intron 12 of 20)	intron (NM_001199632, intron 12 of 20)	-14197.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14207854-1	chr2	14207354	14208354	+	579.0	f1_balb.idr	intron (NM_001081310, intron 3 of 3)	intron (NM_001081310, intron 3 of 3)	-21560.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147540936-1	chr5	147540436	147541436	+	579.0	f1_balb.idr	intron (NM_028291, intron 16 of 18)	intron (NM_028291, intron 16 of 18)	110780.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	12.0	18.0	22.0	6.5	12.0	2.0
Merged-chr2-172351429-2	chr2	172350929	172351929	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025912, intron 1 of 2)	intron (NM_025912, intron 1 of 2)	5852.0	NM_025912	67017.0	Mm.30013	NM_025912	ENSMUSG00000027495	Fam210b	2010011I20Rik|AI430961|AV108736	family with sequence similarity 210, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86566380-2	chr11	86565880	86566880	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199046, intron 9 of 9)	intron (NM_001199046, intron 9 of 9)	17778.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-56802972-1	chr4	56802472	56803472	+	579.0	f0_balb.idr	promoter-TSS (NM_026079)	promoter-TSS (NM_026079)	-641.0	NM_026079	230233.0	Mm.282743	NM_026079	ENSMUSG00000028431	Ikbkap	3110040G09Rik|6030413P05|C78473|Elp1|IKAP	inhibitor of kappa light polypeptide enhancer in B cells, kinase complex-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-103924906-2	chr13	103924406	103925406	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-4320.0	NM_001005868	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138843567-1	chr1	138843067	138844067	+	579.0	f0_balb.idr	intron (NM_010714, intron 2 of 6)	intron (NM_010714, intron 2 of 6)	-1123.0	NM_001025565	16876.0	Mm.250732	NM_010714	ENSMUSG00000019230	Lhx9	3110009O07Rik|BB104635|LH2B	LIM homeobox protein 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-77141159-2	chr6	77140659	77141659	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145732, intron 9 of 18)	Lx5|LINE|L1	-101318.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-71897629-2	chr9	71897129	71898129	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253865, intron 3 of 14)	intron (NM_001253865, intron 3 of 14)	-1533.0	NM_001253863	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34609578-2	chr6	34609078	34610078	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 1 of 13)	MLT1B|LTR|ERVL-MaLR	11074.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	3.0	5.5	1.0	2.0	0.0	0.0
Merged-chr11-23236168-1	chr11	23235668	23236668	+	579.0	f0_balb.idr	Intergenic	Intergenic	-19873.0	NM_001035226	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100398518-1	chr13	100398018	100399018	+	579.0	f1_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	54346.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	2.5	11.0	7.0	4.0	4.5	4.5
Merged-chr10-80706143-2	chr10	80705643	80706643	+	579.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007460)	TTS (NM_007460)	3450.0	NM_027829	71564.0	Mm.35802	NM_027829	ENSMUSG00000055862	Izumo4	9030607L17Rik|AI550407	IZUMO family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-46876234-2	chr16	46875734	46876734	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1-int|LTR|ERVL-MaLR	-379267.0	NM_021497	58998.0	Mm.40477	NM_021495	ENSMUSG00000022656	Nectin3	2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113|Pvrl3	nectin cell adhesion molecule 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-82400092-2	chr8	82399592	82400592	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001254747, intron 1 of 7)	intron (NM_001254747, intron 1 of 7)	2494.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	14.0	65.5	86.5	36.5	65.5	53.5
Merged-chr2-121758526-1	chr2	121758026	121759026	+	579.0	f1_balb.idr	intron (NM_001360084, intron 1 of 13)	intron (NM_001360084, intron 1 of 13)	48531.0	NM_001360084	228564.0	Mm.121514	NM_172673	ENSMUSG00000027238	Frmd5	1500032A09Rik|A930004K21Rik|R75430	FERM domain containing 5	protein-coding	4.0	5.5	1.5	0.5	4.0	3.5
Merged-chr14-73125020-2	chr14	73124520	73125520	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17490.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113634127-2	chr13	113633627	113634627	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15563.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3962470-2	chr19	3961970	3962970	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028545, intron 1 of 9)	intron (NM_028545, intron 1 of 9)	3662.0	NM_028545	73458.0	Mm.482922	NM_028545	ENSMUSG00000037263	Aldh3b3	1700055N04Rik	aldehyde dehydrogenase 3 family, member B3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126871780-2	chr8	126871280	126872280	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22760.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129379330-1	chr2	129378830	129379830	+	579.0	f1_balb.idr	Intergenic	Intergenic	-8191.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	76.5	153.0	80.0	36.5	86.0	72.0
Merged-chr14-25420970-2	chr14	25420470	25421470	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38215.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182928035-2	chr1	182927535	182928535	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26753.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120157656-2	chr6	120157156	120158156	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-36167.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148908311-2	chr4	148907811	148908811	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027195, intron 4 of 15)	intron (NM_027195, intron 4 of 15)	44011.0	NR_154553	108168987.0	Mm.393596	NR_154553		Gm13205	AA408865	predicted gene 13205	ncRNA	2.0	7.5	0.0	2.0	1.5	0.0
Merged-chr16-90308141-2	chr16	90307641	90308641	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23638.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-4407941-2	chr6	4407441	4408441	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97677.0	NM_007743	12843.0	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39374610-1	chr18	39374110	39375110	+	579.0	f0_balb.idr	3' UTR (NM_175164, exon 23 of 23)	3' UTR (NM_175164, exon 23 of 23)	112635.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45970130-1	chr4	45969630	45970630	+	579.0	f1_balb.idr	intron (NM_001290475, intron 1 of 16)	intron (NM_001290475, intron 1 of 16)	-2167.0	NM_146142	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	0.0	4.5	1.0	2.5	8.0	4.0
Merged-chr13-113606877-2	chr13	113606377	113607377	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	11687.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-42016176-2	chr13	42015676	42016676	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35845.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120580870-2	chr9	120580370	120581370	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3539.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-69707161-1	chr2	69706661	69707661	+	579.0	f0_c57.idr	intron (NM_177244, intron 4 of 13)	intron (NM_177244, intron 4 of 13)	5445.0	NM_177244	320720.0	Mm.289566	NM_177244	ENSMUSG00000027086	Fastkd1	5330408N05Rik|mKIAA1800	FAST kinase domains 1	protein-coding	1.5	9.5	9.5	6.5	2.0	5.5
Merged-chr10-127300878-2	chr10	127300378	127301378	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003913, intron 11 of 20)	intron (NM_001003913, intron 11 of 20)	10085.0	NM_001290183	13198.0	Mm.110220	NM_007837	ENSMUSG00000025408	Ddit3	CHOP-10|CHOP10|chop|gadd153	DNA-damage inducible transcript 3	protein-coding	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr7-12883173-2	chr7	12882673	12883673	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153802, intron 1 of 3)	MLT1D|LTR|ERVL-MaLR	1995.0	NM_153802	243833.0	Mm.293823	NM_153802	ENSMUSG00000060397	Zfp128	9630016P15Rik|Znf8|mZnf8	zinc finger protein 128	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4_GL456216_random-38951-1	chr4_GL456216_random	38451	39451	+	579.0	f0_c57.idr	Intergenic	Intergenic	23070.0	NM_001033326	236082.0	Mm.305345	NM_001033326	ENSMUSG00000063897	Dhrsx	C80877|D4Ertd296e|Dhrsxy|Pscad	dehydrogenase/reductase (SDR family) X chromosome	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26122338-2	chr2	26121838	26122838	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026495, intron 1 of 5)	CpG	473.0	NM_026495	67991.0	Mm.131074	NM_026495	ENSMUSG00000026932	Nacc2	0610020I02Rik|AI448087|Btbd14a|C030048H19Rik	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44259701-1	chr19	44259201	44260201	+	579.0	f0_balb.idr	Intergenic	Intergenic	-33975.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	10.0	3.5	1.5	1.0	3.5	1.0
Merged-chr7-34672757-2	chr7	34672257	34673257	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17248.0	NM_001360818	233107.0	Mm.76761	NM_146188	ENSMUSG00000030499	Kctd15	BC031749	potassium channel tetramerisation domain containing 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35384920-1	chr17	35384420	35385420	+	579.0	f1_c57bl6.idr	TTS (NM_001143689)	TTS (NM_001143689)	5303.0	NM_001143689	15015.0	Mm.464284	NM_001143689	ENSMUSG00000035929	H2-Q4	H-2Q4|H2-Gs10|Qa-4|Qa4|Qat-4|Qb-1|Qb1	histocompatibility 2, Q region locus 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118500007-2	chr11	118499507	118500507	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024931, intron 9 of 14)	MTD|LTR|ERVL-MaLR	23175.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-124327328-1	chr10	124326828	124327828	+	579.0	f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-141746.0	NR_028310	75030.0	Mm.159403	NR_028310	ENSMUSG00000112364	4930503E24Rik	-	eukaryotic translation initiation factor 3, subunit I pseudogene	pseudo	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr2-19655893-2	chr2	19655393	19656393	+	579.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_033642)	TTS (NR_033642)	2004.0	NR_033642	100041244.0	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-103286591-2	chr9	103286091	103287091	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027918, intron 1 of 16)	intron (NM_027918, intron 1 of 16)	1706.0	NM_027918	71775.0	Mm.18802	NM_027918	ENSMUSG00000033688	1300017J02Rik	Ica|mICA	RIKEN cDNA 1300017J02 gene	protein-coding	1.0	0.0	0.5	3.0	0.0	2.0
Merged-chr13-101848371-2	chr13	101847871	101848871	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80154.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76697211-2	chr15	76696711	76697711	+	579.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_182805, exon 2 of 11)	exon (NM_182805, exon 2 of 11)	485.0	NM_182805	76282.0	Mm.30130	NM_182805	ENSMUSG00000022546	Gpt	1300007J06Rik|2310022B03Rik|ALT|ALT1|Gpt-1|Gpt1	glutamic pyruvic transaminase, soluble	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21292779-2	chr9	21292280	21293280	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-1571.0	NM_009878	12581.0	Mm.29020	NM_009878	ENSMUSG00000096472	Cdkn2d	INK4d|p19|p19INK4d	cyclin dependent kinase inhibitor 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128749241-1	chr2	128748741	128749741	+	579.0	f1_c57bl6.idr	intron (NM_008587, intron 4 of 18)	Charlie2b|DNA|hAT-Charlie	50326.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	26.0	48.0	45.5	7.0	65.0	43.0
Merged-chr7-74459193-1	chr7	74458693	74459693	+	579.0	f1_c57bl6.idr	intron (NM_001038643, intron 2 of 10)	intron (NM_001038643, intron 2 of 10)	95587.0	NM_023908	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.0	0.0	0.0	2.0	0.0	1.0
Merged-chr15-99128304-2	chr15	99127804	99128804	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139140, intron 1 of 12)	intron (NM_139140, intron 1 of 12)	1459.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72326956-1	chr8	72326456	72327456	+	579.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	7894.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	0.5	0.0	2.0	3.0	0.0	1.5
Merged-chr8-8669508-2	chr8	8669008	8670008	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176849, intron 3 of 3)	intron (NM_176849, intron 3 of 3)	-8735.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34022809-1	chr17	34022309	34023309	+	579.0	f1_c57bl6.idr	intron (NM_009066, intron 4 of 6)	intron (NM_009066, intron 4 of 6)	1871.0	NM_009066	19763.0	Mm.20343	NM_009066	ENSMUSG00000024325	Ring1	Ring1A	ring finger protein 1	protein-coding	4.0	1.0	0.0	7.0	0.0	9.0
Merged-chr1-23062202-1	chr1	23061702	23062702	+	579.0	f0_balb.idr	Intergenic	Intergenic	40051.0	NM_025746	66755.0	Mm.431297	NM_025746	ENSMUSG00000073730	4933415F23Rik	-	RIKEN cDNA 4933415F23 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18391884-2	chr2	18391384	18392384	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190817, intron 1 of 12)	intron (NM_001190817, intron 1 of 12)	946.0	NM_001190817	13418.0	Mm.246674	NM_007869	ENSMUSG00000026740	Dnajc1	4733401K02Rik|AA960110|D230036H06Rik|Dnajl1|ERdj1|ERj1p|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-28081368-2	chr15	28080868	28081868	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55520.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173660613-1	chr2	173660113	173661113	+	579.0	f0_balb.idr	intron (NM_024436, intron 1 of 6)	intron (NM_024436, intron 1 of 6)	768.0	NM_024436	19334.0	Mm.275304	NM_024436	ENSMUSG00000027519	Rab22a	3732413A17Rik|AI662177|AW319644|AW550514|E130120E14Rik|Rab22	RAB22A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12759487-2	chr17	12758987	12759987	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010515, intron 1 of 47)	intron (NM_010515, intron 1 of 47)	10219.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-14600146-2	chr19	14599646	14600646	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-1963.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-149355979-2	chr6	149355479	149356479	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR1F_Mm|LTR|ERVK	46565.0	NM_001289662	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20729582-1	chr11	20729082	20730082	+	579.0	f0_balb.idr	intron (NM_181411, intron 1 of 8)	intron (NM_181411, intron 1 of 8)	11974.0	NM_001290545	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	1.0	1.0	0.0	0.0	5.0	1.0
Merged-chr3-9895844-1	chr3	9895344	9896344	+	579.0	f1_c57bl6.idr	Intergenic	Intergenic	-62165.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	1.5	12.5	8.0	1.5	6.5	11.5
Merged-chr17-27095553-1	chr17	27095053	27096053	+	579.0	f1_balb.idr	exon (NM_080553, exon 17 of 58)	exon (NM_080553, exon 17 of 58)	4308.0	NR_106142	102465779.0		NR_106142	ENSMUSG00000098826	Mir7677	Gm27400|mmu-mir-7677	microRNA 7677	ncRNA	1.0	4.5	1.0	0.0	5.0	1.0
Merged-chr19-10512427-2	chr19	10511927	10512927	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025333, intron 3 of 3)	B2_Mm1t|SINE|B2	12782.0	NM_025333	66072.0	Mm.180063	NM_025333	ENSMUSG00000024668	Sdhaf2	0610038F07Rik|AA407634|AW049997	succinate dehydrogenase complex assembly factor 2	protein-coding	3.5	19.0	29.0	2.5	14.5	11.0
Merged-chr9-107306316-1	chr9	107305816	107306816	+	579.0	f1_balb.idr	Intergenic	Intergenic	9657.0	NM_001317354	12700.0	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	9.0	4.5	3.5	0.0	2.0	1.0
Merged-chr13-23749955-1	chr13	23749455	23750455	+	579.0	f1_c57bl6.idr	Intergenic	Intergenic	-1133.0	NM_175660	319172.0	Mm.423402	NM_175660	ENSMUSG00000061615	Hist1h2ab	H2A.1|H2a-53	histone cluster 1, H2ab	protein-coding	1.0	20.0	3.0	1.5	7.0	6.0
Merged-chr14-51219312-1	chr14	51218812	51219812	+	579.0	f0_balb.idr	Intergenic	MLTR25A|LTR|ERVK	15617.0	NM_017389	503847.0	Mm.377124	NM_017389	ENSMUSG00000050766	Ear14	-	eosinophil-associated, ribonuclease A family, member 14	protein-coding	0.0	0.0	2.0	0.5	1.0	3.5
Merged-chr17-13895784-2	chr17	13895284	13896284	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151731, intron 30 of 33)	intron (NR_151731, intron 30 of 33)	-52589.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111510319-2	chr8	111509819	111510819	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170742, intron 1 of 25)	PB1D11|SINE|Alu	11788.0	NM_001170742	319481.0	Mm.247294	NM_176923	ENSMUSG00000031959	Wdr59	5430401O09Rik|Cdw12	WD repeat domain 59	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-87887056-2	chr4	87886556	87887556	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027326, intron 2 of 10)	intron (NM_027326, intron 2 of 10)	-80733.0	NM_029931	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140406811-2	chr5	140406311	140407311	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12494.0	NM_133916	27979.0	Mm.21671	NM_133916	ENSMUSG00000056076	Eif3b	AL033316|AL033334|AL033369|AW208965|D5Wsu45e|EIF3-ETA|EIF3-P110|EIF3-P116|Eif3s9|PRT1	eukaryotic translation initiation factor 3, subunit B	protein-coding	1.0	4.5	6.5	0.0	9.0	0.0
Merged-chr18-34578999-2	chr18	34578499	34579499	+	579.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177773)	TTS (NM_177773)	116.0	NR_151691	75533.0	Mm.275430	NM_080637	ENSMUSG00000035984	Nme5	1700019D05Rik|Nm23-M5	NME/NM23 family member 5	protein-coding	3.0	0.0	0.0	0.0	1.5	0.0
Merged-chr2-52984096-2	chr2	52983596	52984596	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	126228.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54414261-1	chr14	54413761	54414761	+	579.0	f1_c57bl6.idr	intron (NM_011405, intron 2 of 11)	intron (NM_011405, intron 2 of 11)	3418.0	NM_001253679	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	0.0	1.5	1.0	15.0	0.5	1.0
Merged-chr8-10900410-2	chr8	10899910	10900910	+	579.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_102285, exon 2 of 3)	non-coding (NR_102285, exon 2 of 3)	488.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53774072-3	chr19	53773560	53774560	+	579.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170847, intron 1 of 13)	intron (NM_001170847, intron 1 of 13)	96754.0	NM_001170847	73713.0	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23603722-1	chr17	23603222	23604222	+	579.0	f1_c57bl6.idr	intron (NM_001033425, intron 1 of 5)	intron (NM_001033425, intron 1 of 5)	2896.0	NM_001289482	332221.0	Mm.270315	NM_001033425	ENSMUSG00000023902	Zscan10	BC068284|Zfp206|Zkscan10|Znf206	zinc finger and SCAN domain containing 10	protein-coding	0.5	0.0	0.0	0.5	0.0	0.0
Merged-chr17-35669281-2	chr17	35668781	35669781	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010364, intron 11 of 13)	intron (NM_010364, intron 11 of 13)	-1689.0	NM_175137	68915.0	Mm.32002	NM_175137	ENSMUSG00000038838	Vars2	1190004I24Rik|Vars2l|mKIAA1885	valyl-tRNA synthetase 2, mitochondrial	protein-coding	0.0	4.0	0.0	0.0	0.0	0.0
Merged-chr8-67709102-1	chr8	67708602	67709602	+	579.0	f1_balb.idr	intron (NM_177698, intron 14 of 14)	intron (NM_177698, intron 14 of 14)	109193.0	NM_027626	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0.0	0.0	0.5	2.0	0.0	4.5
Merged-chr13-55507603-2	chr13	55507103	55508103	+	579.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105910)	promoter-TSS (NR_105910)	89.0	NR_105910	102465570.0		NR_105910	ENSMUSG00000099096	Mir6945	Gm27779|mmu-mir-6945	microRNA 6945	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70003986-1	chr8	70003486	70004486	+	579.0	f1_balb.idr	Intergenic	B1_Mm|SINE|Alu	-7602.0	NM_145596	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	75.0	173.0	99.0	100.5	197.5	102.5
Merged-chr6-94509034-1	chr6	94508534	94509534	+	579.0	f0_balb.idr	intron (NM_026255, intron 2 of 9)	intron (NM_026255, intron 2 of 9)	8720.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	48.5	49.0	58.5	47.5	92.0	55.0
Merged-chr11-115117006-2	chr11	115116506	115117506	+	579.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145634, exon 7 of 7)	exon (NM_145634, exon 7 of 7)	16986.0	NM_001347648	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108292285-2	chr9	108291785	108292785	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025449, intron 1 of 5)	intron (NM_025449, intron 1 of 5)	1828.0	NM_025449	66257.0	Mm.10407	NM_025449	ENSMUSG00000032606	Nicn1	1500032A17Rik	nicolin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69540409-1	chr12	69539909	69540909	+	579.0	f1_c57bl6.idr	Intergenic	Intergenic	42619.0	NM_001033236	207965.0	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr8-41443611-1	chr8	41443111	41444111	+	579.0	f1_balb.idr	Intergenic	Intergenic	-26493.0	NM_013522	14300.0	Mm.217312	NM_013522	ENSMUSG00000031590	Frg1	-	FSHD region gene 1	protein-coding	0.0	3.0	1.0	0.0	0.0	0.5
Merged-chr7-80823051-2	chr7	80822551	80823551	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-19720.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-26565094-1	chr14	26564594	26565594	+	579.0	f0_c57.idr	Intergenic	Intergenic	-8764.0	NM_001285467	211922.0	Mm.260512	NM_145969	ENSMUSG00000040818	Dennd6a	Fam116a	DENN/MADD domain containing 6A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-77618104-2	chr8	77617604	77618604	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6068.0	NR_045467	67357.0	Mm.71129	NR_045467	ENSMUSG00000086781	1700092C02Rik	-	RIKEN cDNA 1700092C02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102804704-2	chr14	102804204	102805204	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	177928.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33906737-1	chr17	33906237	33907237	+	579.0	f1_balb.idr	TTS (NR_040470)	TTS (NR_040470)	1602.0	NR_040470	474160.0	Mm.206186	NR_040470	ENSMUSG00000092349	Platr17	-	pluripotency associated transcript 17	ncRNA	3.0	20.5	12.0	11.0	6.5	5.0
Merged-chr17-73303387-2	chr17	73302887	73303887	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95909.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139462996-2	chr5	139462496	139463496	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2462.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19341118-2	chr7	19340618	19341618	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-3953.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55481513-2	chr13	55481013	55482013	+	578.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177371, intron 7 of 14)	(CGGGG)n|Simple_repeat|Simple_repeat	-3737.0	NR_105909	102465569.0		NR_105909	ENSMUSG00000098341	Mir6944	Gm27710|mmu-mir-6944	microRNA 6944	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57755923-2	chr6	57755423	57756423	+	578.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 4 of 4)	intron (NM_146168, intron 4 of 4)	53468.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-39442714-2	chr10	39442214	39443214	+	578.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	72915.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88197323-2	chr6	88196823	88197823	+	578.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355253, intron 1 of 5)	CpG	-1341.0	NM_008090	14461.0	Mm.491156	NM_008090	ENSMUSG00000015053	Gata2	Gata-2	GATA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12207415-2	chr15	12206911	12207911	+	578.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356498, intron 1 of 15)	ID4_|SINE|ID	2383.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83630417-2	chr6	83629884	83630884	+	578.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	25732.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	6.5	9.5	13.0	7.5	4.0	3.5
Merged-chr5-109561339-2	chr5	109560903	109561903	+	578.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL1|LINE|L1	-2410.0	NM_001310694	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	5.0	2.0	8.0	0.0	2.5	6.0
Merged-chr12-70478717-2	chr12	70478217	70479217	+	578.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_037248, intron 2 of 4)	L1MC4a|LINE|L1	25563.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111945228-2	chr12	111944728	111945728	+	578.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029464)	promoter-TSS (NR_029464)	-746.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101847374-1	chr13	101846874	101847874	+	578.666687	f0_balb.idr	Intergenic	Intergenic	-79157.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-20520963-1	chr3	20520463	20521463	+	578.666687	f0_balb.idr	Intergenic	Intergenic	-153786.0	NM_175086	11608.0	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34549401-4	chr5	34548877	34549877	+	578.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145859)	promoter-TSS (NM_001145859)	-199.0	NM_001145859	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142096884-2	chr7	142096384	142097384	+	578.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1600.0	NM_008748	18218.0	Mm.39725	NM_008748	ENSMUSG00000037887	Dusp8	5530400B01Rik|AI593498|Nttp1	dual specificity phosphatase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-95925730-3	chr5	95925232	95926232	+	578.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31207.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-43576467-2	chr10	43575967	43576967	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2702.0	NM_009846	12484.0	Mm.29742	NM_009846	ENSMUSG00000047139	Cd24a	Cd24|HSA|Ly-52|nectadrin	CD24a antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135601721-2	chr7	135601221	135602221	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316680, intron 2 of 20)	intron (NM_001316680, intron 2 of 20)	-4107.0	NM_001316679	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-54558877-2	chr9	54558377	54559377	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019686, intron 1 of 5)	intron (NM_019686, intron 1 of 5)	1202.0	NM_019686	56506.0	Mm.42192	NM_019686	ENSMUSG00000037493	Cib2	2810434I23Rik|AI449053	calcium and integrin binding family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120510487-2	chr1	120509978	120510978	+	578.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-5454.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	7.5	4.5	1.5	0.0	0.0	2.5
Merged-chr11-21403516-2	chr11	21403016	21404016	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32249.0	NM_001290634	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	0.0	1.5	2.0	0.0	1.5	2.0
Merged-chr4-11028343-2	chr4	11027843	11028843	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20724.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr11-63828264-2	chr11	63827764	63828764	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94020.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-60047591-2	chr5	60047091	60048091	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-61589.0	NR_040682	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	4.0	0.5	0.0	0.0	0.0	0.0
Merged-chr14-55558162-2	chr14	55557662	55558662	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-1867.0	NR_037572	28199.0	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170172058-2	chr1	170171558	170172558	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133806, intron 1 of 10)	intron (NM_133806, intron 1 of 10)	2906.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34862064-2	chr6	34861564	34862564	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1082.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64340577-2	chr7	64340077	64341077	+	578.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172742, exon 16 of 16)	3' UTR (NM_172742, exon 16 of 16)	33518.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81342842-2	chr13	81342342	81343342	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 83 of 89)	intron (NM_054053, intron 83 of 89)	290302.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26940508-2	chr2	26940008	26941008	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198628, intron 4 of 18)	intron (NM_198628, intron 4 of 18)	6439.0	NM_198628	279029.0	Mm.330079	NM_198628	ENSMUSG00000049897	Stkld1	Gm711|Sgk071	serine/threonine kinase-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3417459-2	chr12	3416959	3417959	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_030694, intron 1 of 2)	B1_Mm|SINE|Alu	9288.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64716729-2	chr17	64716229	64717229	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 16 of 21)	intron (NM_008549, intron 16 of 21)	-50382.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37325961-2	chr10	37325461	37326461	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-187035.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63543747-2	chr4	63543247	63544247	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1018.0	NM_024173	66290.0	Mm.371615	NM_024173	ENSMUSG00000039105	Atp6v1g1	1810024D14Rik|AA960677|ATP6J|Atp6g1|VAG1|Vma10	ATPase, H+ transporting, lysosomal V1 subunit G1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33900828-2	chr16	33900328	33901328	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 7 of 14)	intron (NM_001145884, intron 7 of 14)	66210.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-126700705-2	chr3	126700205	126701205	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 3 of 18)	intron (NM_001025438, intron 3 of 18)	103754.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	0.0	2.0	2.5	2.0	0.0	3.0
Merged-chr4-147962558-2	chr4	147962058	147963058	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21663.0	NM_029841	77034.0	Mm.183076	NM_029841	ENSMUSG00000044496	2510039O18Rik	Kiaa2013	RIKEN cDNA 2510039O18 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107249222-2	chr3	107248722	107249722	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9515.0	NM_001044382	246691.0	Mm.437416	NM_001044382	ENSMUSG00000070368	Prok1	EG-VEGF	prokineticin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98202184-1	chr11	98201684	98202684	+	578.5	f0_balb.idr	Intergenic	Intergenic	-1121.0	NM_001109628	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-18632405-2	chr5	18631905	18632905	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-271992.0	NM_010305	14677.0	Mm.254629	NM_010305	ENSMUSG00000057614	Gnai1	AU046200|Gialpha1|Gnai-1	guanine nucleotide binding protein (G protein), alpha inhibiting 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26644865-2	chr17	26644365	26645365	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 9 of 9)	intron (NM_026170, intron 9 of 9)	-31531.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0.0	0.5	0.0	0.0	0.5	0.0
Merged-chr12-112736290-2	chr12	112735790	112736790	+	578.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001024602, exon 9 of 19)	exon (NM_001024602, exon 9 of 19)	2968.0	NR_105905	102466989.0		NR_105905	ENSMUSG00000099165	Mir6940	Gm27655|mmu-mir-6940	microRNA 6940	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22267401-2	chr16	22266901	22267901	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1396.0	NM_001330555	20462.0	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54306650-2	chr13	54306150	54307150	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-64699.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-94863812-2	chr17	94863312	94864312	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1106.0	NM_001024731	100044193.0		NM_001024731	ENSMUSG00000095193	Gm20939	-	predicted gene, 20939	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37618978-2	chr13	37618460	37619460	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-207078.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	4.5	2.5	6.5	4.5	1.0	8.5
Merged-chr12-40035833-2	chr12	40035333	40036333	+	578.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007487, exon 2 of 2)	3' UTR (NM_007487, exon 2 of 2)	1543.0	NM_007487	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-46712342-2	chr7	46711779	46712779	+	578.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_011315, intron 3 of 3)	intron (NM_011315, intron 3 of 3)	-1628.0	NM_030233	78935.0	Mm.289866	NM_030233	ENSMUSG00000006763	Saal1	5031425D22Rik|SPACIA1	serum amyloid A-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46541878-2	chr4	46541378	46542378	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 10 of 11)	intron (NM_001164804, intron 10 of 11)	-5737.0	NM_029077	74735.0	Mm.240252	NM_029077	ENSMUSG00000039853	Trim14	5830400N10Rik|pub	tripartite motif-containing 14	protein-coding	0.0	1.0	0.0	0.0	0.0	0.5
Merged-chr11-87113639-2	chr11	87113139	87114139	+	578.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029652)	TTS (NR_029652)	635.0	NR_029652	723834.0		NR_029652	ENSMUSG00000065589	Mir301	Mirn301|mir-301a|mmu-mir-301	microRNA 301	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12254456-2	chr17	12253956	12254956	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357722, intron 10 of 25)	intron (NM_001357722, intron 10 of 25)	64204.0	NM_011948	26407.0	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30615354-2	chr14	30614854	30615854	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	-5044.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.0	0.0	3.0	0.0	5.0	0.5
Merged-chr11-86623770-2	chr11	86623270	86624270	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 7 of 11)	B3|SINE|B2	-39612.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-22188382-2	chr1	22187882	22188882	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-225732.0	NM_001310477	226922.0	Mm.336519	NM_023872	ENSMUSG00000028033	Kcnq5	7730402H11|9230107O05Rik|AA589396|D1Mgi1	potassium voltage-gated channel, subfamily Q, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55005775-2	chr11	55005275	55006275	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 8 of 24)	intron (NR_138556, intron 8 of 24)	27696.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78528965-2	chr15	78528465	78529465	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204152, intron 1 of 3)	intron (NM_001204152, intron 1 of 3)	686.0	NM_001204153	72709.0	Mm.34776	NM_028331	ENSMUSG00000022440	C1qtnf6	2810036M19Rik|CTRP6	C1q and tumor necrosis factor related protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-72987928-2	chr16	72987428	72988428	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019413, intron 16 of 28)	B1_Mus1|SINE|Alu	324779.0	NM_019413	19876.0	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-97017458-2	chr5	97016958	97017958	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 1 of 15)	intron (NM_080708, intron 1 of 15)	19769.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-93302900-2	chr13	93302400	93303400	+	578.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284189)	promoter-TSS (NM_001284189)	-857.0	NM_147176	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	45.0	60.5	31.5	52.0	63.5	39.0
Merged-chr1-5830091-2	chr1	5829591	5830591	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E1A|LTR|ERVL-MaLR	87307.0	NM_010342	226304.0	Mm.291110	NM_010342	ENSMUSG00000033774	Npbwr1	Gpr7|Nbpwr1	neuropeptides B/W receptor 1	protein-coding	0.0	0.0	0.0	2.0	0.0	0.0
Merged-chr18-74210373-2	chr18	74209873	74210873	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1-int|LTR|ERVL-MaLR	-2555.0	NM_025581	66468.0	Mm.283406	NM_025581	ENSMUSG00000036223	Ska1	2810433K01Rik|AV117428	spindle and kinetochore associated complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-115856070-2	chr2	115855574	115856574	+	578.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	208545.0	NM_001346044	17536.0	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr18-35093586-2	chr18	35093086	35094086	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16C|LTR|ERVL	-25326.0	NM_009818	12385.0	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	10.0	14.5	3.5	12.0	1.0	3.0
Merged-chr8-70643256-2	chr8	70642756	70643756	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10800.0	NM_001330687	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	9.0	2.0	1.0	8.0	0.5	0.0
Merged-chr15-97181433-2	chr15	97180933	97181933	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14189.0	NR_155279	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119072182-2	chr9	119071682	119072682	+	578.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164567)	TTS (NM_001164567)	16079.0	NM_001293648	18799.0	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-56797137-2	chr10	56796637	56797637	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	365156.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130936473-2	chr4	130935973	130936973	+	578.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010686)	TTS (NM_010686)	-7912.0	NM_010769	17180.0	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143425145-2	chr5	143424645	143425645	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	21325.0	NM_025841	66913.0	Mm.181880	NM_025841	ENSMUSG00000079111	Kdelr2	1110007A14Rik	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75887316-2	chr14	75886816	75887816	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39393.0	NR_028481	100303751.0	Mm.484707	NR_028481	ENSMUSG00000065147	Snora31	MBI-161	small nucleolar RNA, H/ACA box 31	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121588120-2	chr10	121587620	121588620	+	578.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081056, exon 25 of 25)	3' UTR (NM_001081056, exon 25 of 25)	-1326.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	6.0	7.5	7.5	3.5	3.5	6.0
Merged-chr17-11611702-2	chr17	11611202	11612202	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016694, intron 6 of 11)	intron (NM_016694, intron 6 of 11)	271487.0	NR_045808	52027.0	Mm.442257	NR_045808		D17Ertd648e	-	DNA segment, Chr 17, ERATO Doi 648, expressed	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34886976-2	chr6	34886476	34887476	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013366, intron 11 of 14)	intron (NM_001013366, intron 11 of 14)	-8911.0	NM_001135611	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152625876-2	chr1	152625376	152626376	+	578.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016846)	promoter-TSS (NM_016846)	-659.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86013234-2	chr1	86012734	86013734	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44-int|LTR|ERVK	-8708.0	NM_001122732	70060.0	Mm.196313	NM_027029	ENSMUSG00000026226	Spata3	1700011N12Rik|1700029H01Rik|4930424D10Rik|Mtsarg1|Tsarg1	spermatogenesis associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-143731123-1	chr1	143730623	143731623	+	578.5	f0_balb.idr	Intergenic	B3A|SINE|B2	-8226.0	NM_001038593	69367.0	Mm.272727	NM_023505	ENSMUSG00000018196	Glrx2	1700010P22Rik|AI645710|Grx2	glutaredoxin 2 (thioltransferase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36615010-2	chr16	36614510	36615510	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 5 of 7)	intron (NM_019388, intron 5 of 7)	51067.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83052048-2	chr6	83051548	83052548	+	578.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013586, exon 14 of 14)	3' UTR (NM_013586, exon 14 of 14)	2337.0	NR_106007	102465630.0		NR_106007	ENSMUSG00000099035	Mir7040	Gm27489|mmu-mir-7040	microRNA 7040	ncRNA	2.5	0.0	2.0	0.5	0.0	3.5
Merged-chr11-44541287-2	chr11	44540793	44541793	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 3 of 5)	intron (NM_001166553, intron 3 of 5)	21916.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	12.0	12.5	22.0	1.5	11.0	15.5
Merged-chr5-31292966-2	chr5	31292466	31293466	+	578.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_022424, exon 7 of 7)	3' UTR (NM_022424, exon 7 of 7)	-1852.0	NM_026298	67661.0	Mm.293023	NM_026298	ENSMUSG00000038564	Ift172	4930553F24Rik|Slb|avc1|wim	intraflagellar transport 172	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32927080-2	chr2	32926580	32927580	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199302, intron 24 of 24)	intron (NM_199302, intron 24 of 24)	34175.0	NM_199302	227738.0	Mm.248037	NM_199302	ENSMUSG00000026792	Lrsam1	-	leucine rich repeat and sterile alpha motif containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-67047958-2	chr9	67047458	67048458	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164250, intron 1 of 8)	intron (NM_001164250, intron 1 of 8)	1255.0	NM_001164255	22003.0	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|TPM1kappa|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59328232-2	chr2	59327732	59328732	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 11 of 20)	intron (NM_175464, intron 11 of 20)	58450.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-40088548-2	chr1	40088048	40089048	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360800, intron 1 of 8)	intron (NM_001360800, intron 1 of 8)	2455.0	NM_001360800	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80768585-2	chr12	80768085	80769085	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7870.0	NM_001008423	380768.0	Mm.29367	NM_001008423	ENSMUSG00000062961	Ccdc177	Gm1568	coiled-coil domain containing 177	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120405291-2	chr2	120404791	120405791	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172672, intron 1 of 23)	intron (NM_172672, intron 1 of 23)	-1175.0	NM_001110496	211499.0	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	6.5	25.0	8.0	27.5	12.5	10.0
Merged-chr4-144889859-2	chr4	144889359	144890359	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2968.0	NM_001172424	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-125150671-2	chr4	125150171	125151171	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22790.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101116657-2	chr11	101116157	101117157	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_155071, intron 1 of 6)	polypurine|Low_complexity|Low_complexity	3184.0	NM_026501	67998.0	Mm.33881	NM_026501	ENSMUSG00000017802	Retreg3	1300010M03Rik|4933404C01Rik|AI551748|Fam134c	reticulophagy regulator family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-99664006-2	chr6	99663506	99664506	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025829, intron 1 of 6)	intron (NM_025829, intron 1 of 6)	2765.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-64439970-2	chr3	64439470	64440470	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR46|LTR|ERVK	-29913.0	NM_001104615	637053.0	Mm.425135	NM_001104615	ENSMUSG00000092049	Vmn2r4	AW742767|EG637053	vomeronasal 2, receptor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102403857-2	chr15	102403357	102404357	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2459.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-110845970-2	chr8	110845470	110846470	+	578.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310607)	promoter-TSS (NM_001310607)	-630.0	NM_001310607	102339.0	Mm.272930	NM_133973	ENSMUSG00000031753	Cog4	AW554810|D8Ertd515e	component of oligomeric golgi complex 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-8851582-2	chr9	8851082	8852082	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-48251.0	NM_008829	18667.0	Mm.12798	NM_008829	ENSMUSG00000031870	Pgr	9930019P03Rik|BB114106|NR3C3|PR|PR-A|PR-B	progesterone receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132097263-2	chr4	132096763	132097763	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21950.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163605059-2	chr2	163604559	163605559	+	578.416626	f1_balb.idr|f1_c57bl6.idr	intron (NR_131225, intron 1 of 3)	intron (NR_131225, intron 1 of 3)	-2153.0	NM_001305803	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57643292-5	chr9	57642794	57643794	+	578.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 2 of 14)	intron (NM_001304761, intron 2 of 14)	2359.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75258399-2	chr10	75257899	75258899	+	578.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_153406, intron 6 of 15)	intron (NM_153406, intron 6 of 15)	46009.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-46606622-3	chr7	46606114	46607114	+	578.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013789, intron 8 of 10)	intron (NM_013789, intron 8 of 10)	33193.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51489200-3	chr10	51488736	51489736	+	578.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1662.0	NM_001291894	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55813234-3	chr16	55812730	55813730	+	578.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159395, intron 12 of 12)	intron (NM_001159395, intron 12 of 12)	8908.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144399975-2	chr3	144399475	144400475	+	578.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	170241.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-116625829-2	chr12	116625335	116626335	+	578.25	f0_balb.idr|f1_c57bl6.idr	intron (NM_011215, intron 2 of 22)	intron (NM_011215, intron 2 of 22)	140115.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	8.0	0.0	1.5	0.0	0.0	0.0
Merged-chr7-68668462-2	chr7	68667932	68668932	+	578.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	49976.0	NR_003648	384639.0	Mm.261760	NM_001013781		Gm5334	EG384639	tetraspanin 7 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77738201-2	chr18	77737708	77738708	+	578.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4738.0	NR_155289	105246501.0	Mm.403904	NR_155289		A330094K24Rik	-	RIKEN cDNA A330094K24 gene	ncRNA	2.5	0.0	0.0	1.0	3.0	0.0
Merged-chr2-61802877-2	chr2	61802377	61803377	+	578.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1576.0	NM_009322	21375.0	Mm.308525	NM_009322	ENSMUSG00000035033	Tbr1	-	T-box brain gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-6361002-2	chr7	6360502	6361502	+	578.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21B|LTR|ERVL	-2306.0	NM_001025163	330463.0	Mm.136456	NM_177888	ENSMUSG00000055150	Zfp78	A330079D15|KRAB12|Zfp77	zinc finger protein 78	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113514483-2	chr13	113513983	113514983	+	578.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-11639.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6369635-1	chr4	6369135	6370135	+	578.0	f0_balb.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	3955.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	10.5	18.5	14.0	0.5	26.0	11.5
Merged-chr9-64704193-2	chr9	64703693	64704693	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134399, intron 23 of 24)	intron (NM_001134399, intron 23 of 24)	33563.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21482806-2	chr9	21482306	21483306	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 11 of 19)	ID_B1|SINE|B4	13758.0	NR_029585	387194.0		NR_029585	ENSMUSG00000065547	Mir199a-1	Mirn199|Mirn199a-1|mir-199a-1	microRNA 199a-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118853471-2	chr9	118852971	118853971	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 9 of 13)	intron (NM_001113514, intron 9 of 13)	-73065.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	2.0	0.0	0.0	2.0	0.0	0.0
Merged-chr17-31112882-2	chr17	31112392	31113392	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 13 of 14)	intron (NM_009593, intron 13 of 14)	16719.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	1.5	1.0	5.5	0.5	2.5	2.5
Merged-chr2-150980134-2	chr2	150979634	150980634	+	578.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_207204, exon 2 of 24)	exon (NM_207204, exon 2 of 24)	29264.0	NM_207204	78177.0	Mm.120911	NM_207204	ENSMUSG00000068115	Ninl	4930519N13Rik|Gm1004|Gm1634|mKIAA0980	ninein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-90362966-2	chr6	90362466	90363466	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144940, intron 19 of 19)	intron (NM_144940, intron 19 of 19)	-6528.0	NM_173002	80292.0	Mm.100116	NM_030260	ENSMUSG00000034430	Zxdc	A930012H20|B930086F11Rik|BC003332	ZXD family zinc finger C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121928116-1	chr14	121927616	121928616	+	578.0	f1_balb.idr	intron (NM_026861, intron 4 of 8)	intron (NM_026861, intron 4 of 8)	-12342.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	4.5	8.0	13.0	5.5	2.0	16.0
Merged-chr11-93962703-1	chr11	93962203	93963203	+	578.0	f1_balb.idr	intron (NM_008704, intron 3 of 4)	intron (NM_008704, intron 3 of 4)	5818.0	NM_008704	18102.0	Mm.439702	NM_008704	ENSMUSG00000037601	Nme1	AL024257|NDPK-A|NM23-M1|NM23A	NME/NM23 nucleoside diphosphate kinase 1	protein-coding	6.0	10.0	9.0	2.5	15.0	2.0
Merged-chr13-47103655-2	chr13	47103155	47104155	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025900, intron 2 of 10)	intron (NM_025900, intron 2 of 10)	2566.0	NM_025900	110052.0	Mm.131150	NM_025900	ENSMUSG00000021377	Dek	1810019E15Rik|D13H6S231E	DEK oncogene (DNA binding)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101422214-2	chr7	101421694	101422694	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008548, intron 1 of 30)	intron (NM_001008548, intron 1 of 30)	503.0	NR_152192	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	1.0	0.0	0.0	0.0	2.5	0.0
Merged-chr11-104439825-2	chr11	104439325	104440325	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 2 of 14)	intron (NM_001359634, intron 2 of 14)	2466.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65706350-2	chr17	65705850	65706850	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 3 of 6)	intron (NM_133685, intron 3 of 6)	-64146.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66624528-1	chr9	66624028	66625028	+	578.0	f0_balb.idr	Intergenic	Intergenic	-31413.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-23397788-1	chr1	23397288	23398288	+	578.0	f0_balb.idr	Intergenic	Intergenic	-14613.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137707519-1	chr4	137707019	137708019	+	578.0	f1_c57bl6.idr	promoter-TSS (NM_001331215)	promoter-TSS (NM_001331215)	14.0	NM_001331215	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	0.0	3.0	1.0	0.0	0.0	1.0
Merged-chr11-53537644-2	chr11	53537144	53538144	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252333, intron 8 of 9)	intron (NM_001252333, intron 8 of 9)	17456.0	NM_001361969	20362.0	Mm.274399	NM_033144	ENSMUSG00000018398	Sept8	AW046166|Sepl	septin 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82805613-2	chr18	82805113	82806113	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-46574.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34973195-2	chr17	34972695	34973695	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013558, intron 1 of 1)	intron (NM_013558, intron 1 of 1)	492.0	NM_013558	15482.0	Mm.14287	NM_013558	ENSMUSG00000007033	Hspa1l	Hsc70t|Msh5	heat shock protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153535997-1	chr2	153535497	153536497	+	578.0	f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-6026.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0.0	0.0	3.0	0.0	0.5	0.0
Merged-chr6-124506181-2	chr6	124505681	124506681	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181344, intron 3 of 5)	(TG)n|Simple_repeat|Simple_repeat	-6440.0	NM_023143	50909.0	Mm.333375	NM_023143	ENSMUSG00000055172	C1ra	AI132558|C1r|mC1rA	complement component 1, r subcomponent A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-167928858-2	chr1	167928358	167929358	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	239300.0	NM_033652	110648.0	Mm.330081	NM_033652	ENSMUSG00000026686	Lmx1a	Lmx1.1|dr|dreher|sst	LIM homeobox transcription factor 1 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106141494-2	chr8	106140994	106141994	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4520.0	NM_176838	77411.0	Mm.183003	NM_176838	ENSMUSG00000084128	Esrp2	9530027K23Rik|Rbm35b	epithelial splicing regulatory protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-91362565-2	chr13	91362065	91363065	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CCCCCA)n|Simple_repeat|Simple_repeat	25520.0	NR_045161	320297.0	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29536412-2	chr6	29535912	29536912	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252382, intron 8 of 8)	intron (NM_001252382, intron 8 of 8)	7130.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75050821-1	chr15	75050321	75051321	+	578.0	f1_balb.idr	Intergenic	Intergenic	-1984.0	NM_001252056	17067.0	Mm.1583	NM_010741	ENSMUSG00000079018	Ly6c1	AA682074|AA959465|Ly-6C|Ly-6C1|Ly6c	lymphocyte antigen 6 complex, locus C1	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr12-88467008-1	chr12	88466508	88467508	+	578.0	f0_balb.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-89685.0	NR_045888	71818.0	Mm.490789	NR_045888	ENSMUSG00000113434	3200001D21Rik	-	RIKEN cDNA 3200001D21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117181007-2	chr11	117180507	117181507	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18654.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115332713-2	chr5	115332213	115333213	+	578.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029645)	TTS (NM_029645)	5536.0	NR_036616	108014.0	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	0.5	0.5	0.5	0.0	3.0	1.0
Merged-chr11-120367699-2	chr11	120367199	120368199	+	578.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172802, exon 4 of 5)	exon (NM_172802, exon 4 of 5)	6165.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	0.0	4.5	0.0	0.0	0.0	0.0
Merged-chr7-16461938-2	chr7	16461438	16462438	+	578.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008718, exon 8 of 12)	exon (NM_008718, exon 8 of 12)	9159.0	NM_026938	69094.0	Mm.29633	NM_026938	ENSMUSG00000019158	Tmem160	1810008O21Rik	transmembrane protein 160	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88034207-1	chr7	88033707	88034707	+	578.0	f0_balb.idr	intron (NM_001081414, intron 6 of 9)	intron (NM_001081414, intron 6 of 9)	-243878.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115487294-1	chr5	115486794	115487794	+	578.0	f1_c57bl6.idr	Intergenic	Intergenic	-2810.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	2.0	0.0	0.0	2.0	1.5	0.0
Merged-chr7-25010002-2	chr7	25009502	25010502	+	578.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008168, exon 20 of 20)	3' UTR (NM_008168, exon 20 of 20)	-4065.0	NM_001290469	232975.0	Mm.44101	NM_144921	ENSMUSG00000040907	Atp1a3	Atpa-2	ATPase, Na+/K+ transporting, alpha 3 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-75209850-2	chr1	75209350	75210350	+	578.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011494)	promoter-TSS (NM_011494)	928.0	NM_029010	74577.0	Mm.458319	NM_029010	ENSMUSG00000026200	Glb1l	4833408P15Rik	galactosidase, beta 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123368281-1	chr8	123367781	123368781	+	578.0	f1_balb.idr	intron (NM_172287, intron 13 of 14)	B2_Mm2|SINE|B2	-5430.0	NM_001359076	66855.0	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-24073366-2	chr11	24072866	24073866	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4690.0	NM_016707	14025.0	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89634208-2	chr6	89633708	89634708	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9780.0	NM_001178060	232223.0	Mm.229332	NM_153162	ENSMUSG00000000811	Txnrd3	AI196535|TGR|TR2	thioredoxin reductase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142640274-1	chr3	142639774	142640774	+	578.0	f0_balb.idr	Intergenic	MTEa-int|LTR|ERVL-MaLR	-16328.0	NR_105802	102465200.0		NR_105802	ENSMUSG00000098871	Mir6381	Gm27963|mmu-mir-6381	microRNA 6381	ncRNA	0.0	1.5	0.0	1.0	0.0	0.5
Merged-chr10-77904029-2	chr10	77903529	77904529	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1493.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81573874-2	chr10	81573374	81574374	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-1413.0	NM_019725	21886.0	Mm.38608	NM_019725	ENSMUSG00000034771	Tle2	Grg2|mKIAA4188	transducin-like enhancer of split 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101148789-1	chr15	101148289	101149289	+	578.0	f1_balb.idr	Intergenic	Intergenic	20267.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	0.0	0.5	6.0	9.5	0.5	11.0
Merged-chr2-108357205-2	chr2	108356705	108357705	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL1|LINE|L1	921085.0	NM_029790	76894.0	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-46858021-2	chr1	46857521	46858521	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356417, intron 2 of 10)	B4|SINE|B4	-4403.0	NM_172653	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32189833-1	chr4	32189333	32190333	+	578.0	f0_balb.idr	Intergenic	Intergenic	225726.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	0.5	1.0	0.5	0.5	4.5	0.0
Merged-chr3-138953799-1	chr3	138953299	138954299	+	578.0	f1_c57bl6.idr	intron (NM_001356388, intron 11 of 13)	MTB_Mm|LTR|ERVL-MaLR	121402.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	0.0	0.0	4.0	1.5	1.5	1.5
Merged-chr3-87516860-1	chr3	87516360	87517360	+	578.0	f1_balb.idr	Intergenic	Intergenic	-8718.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	2.5	11.0	17.0	36.0	29.5	46.5
Merged-chr2-151876356-1	chr2	151875856	151876856	+	578.0	f0_balb.idr	Intergenic	Intergenic	33429.0	NM_001040689	228770.0	Mm.159868	NM_001040689	ENSMUSG00000032852	Rspo4	A730099F22|A930029K19Rik	R-spondin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-179806404-2	chr1	179805904	179806904	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2389.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114608337-1	chr5	114607837	114608837	+	578.0	f1_c57bl6.idr	intron (NM_001004180, intron 2 of 2)	intron (NM_001004180, intron 2 of 2)	40086.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr9-105779146-1	chr9	105778646	105779646	+	578.0	f0_balb.idr	intron (NM_172927, intron 6 of 7)	intron (NM_172927, intron 6 of 7)	30502.0	NM_172927	245026.0	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding	0.0	3.5	0.0	0.5	17.5	5.5
Merged-chr8-11447846-2	chr8	11447346	11448346	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009932, intron 47 of 47)	ID_B1|SINE|B4	-30083.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-127404154-1	chr1	127403654	127404654	+	578.0	f1_c57bl6.idr	intron (NM_145128, intron 11 of 17)	intron (NM_145128, intron 11 of 17)	199168.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.0	2.5	4.5	0.0	2.5	3.5
Merged-chr18-23801823-1	chr18	23801323	23802323	+	578.0	f1_balb.idr	intron (NM_001162941, intron 2 of 7)	intron (NM_001162941, intron 2 of 7)	-2147.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.0	0.0	1.5	5.0	0.5	8.5
Merged-chr14-115033710-2	chr14	115033210	115034210	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9961.0	NR_029785	723905.0		NR_029785	ENSMUSG00000065508	Mir17	Mirn17|mir-17|mmu-mir-17	microRNA 17	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-38214352-1	chr7	38213852	38214852	+	578.0	f1_balb.idr	Intergenic	Intergenic	13642.0	NM_024413	72287.0	Mm.333798	NM_024413	ENSMUSG00000074170	Plekhf1	1810013P09Rik|APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology domain containing, family F (with FYVE domain) member 1	protein-coding	0.0	0.5	2.5	1.5	0.0	0.0
Merged-chr1-65054700-1	chr1	65054200	65055200	+	578.0	f0_c57.idr	Intergenic	RLTR45|LTR|ERVK	-3537.0	NM_007777	12968.0	Mm.258170	NM_007777	ENSMUSG00000070870	Cryge	Cryg-2|Cryg-6|DGcry-2|Elo	crystallin, gamma E	protein-coding	0.0	14.0	7.5	0.0	14.0	7.5
Merged-chr4-109114508-2	chr4	109114008	109115008	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355190, intron 2 of 21)	B1_Mus2|SINE|Alu	3528.0	NM_173350	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	9.5	2.0	3.5	5.0	2.0	3.0
Merged-chr2-27642113-2	chr2	27641613	27642613	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35088.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101978274-2	chr5	101977774	101978774	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 4 of 66)	intron (NM_172882, intron 4 of 66)	91647.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	21.5	20.5	18.0	0.0	6.0	15.0
Merged-chr6-124662184-2	chr6	124661684	124662684	+	578.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145130)	promoter-TSS (NM_145130)	-920.0	NR_149320	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-70989500-2	chr2	70989000	70990000	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 3 of 9)	intron (NM_145524, intron 3 of 9)	28874.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58806199-2	chr15	58805699	58806699	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175212, intron 1 of 6)	intron (NM_175212, intron 1 of 6)	17228.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12268259-2	chr15	12267759	12268759	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356498, intron 15 of 15)	intron (NM_001356498, intron 15 of 15)	-53237.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37377502-2	chr19	37377002	37378002	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010615, intron 1 of 21)	PB1|SINE|Alu	1099.0	NM_010615	16551.0	Mm.42203	NM_010615	ENSMUSG00000012443	Kif11	Eg5|Kif8|Kifl1|Knsl1	kinesin family member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30545762-1	chr14	30545262	30546262	+	578.0	f1_balb.idr	Intergenic	Intergenic	-3369.0	NM_009388	21881.0	Mm.290692	NM_009388	ENSMUSG00000021957	Tkt	p68	transketolase	protein-coding	0.5	0.0	0.0	0.0	0.5	0.5
Merged-chr15-59052106-2	chr15	59051606	59052606	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	B4A|SINE|B4	29920.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71657860-1	chr8	71657360	71658360	+	578.0	f1_balb.idr	intron (NM_001029873, intron 11 of 41)	intron (NM_001029873, intron 11 of 41)	13897.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	0.0	3.0	1.0	5.0	12.5	0.0
Merged-chr16-10963472-2	chr16	10962972	10963972	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 2 of 3)	intron (NM_019980, intron 2 of 3)	29649.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117776509-2	chr11	117776009	117777009	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145439, intron 5 of 19)	intron (NM_145439, intron 5 of 19)	3139.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167623836-2	chr2	167623336	167624336	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023230, intron 1 of 3)	B1_Mur1|SINE|Alu	8169.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80010570-1	chr15	80010070	80011070	+	578.0	f1_balb.idr	intron (NM_011057, intron 1 of 6)	intron (NM_011057, intron 1 of 6)	4238.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	8.0	0.5	5.5	3.5	7.0	12.5
Merged-chr8-3620794-2	chr8	3620294	3621294	+	578.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195244)	promoter-TSS (NM_001195244)	502.0	NM_026156	67439.0	Mm.23739	NM_026156	ENSMUSG00000019470	Xab2	0610041O14Rik|AV025587	XPA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9524494-1	chr3	9523994	9524994	+	578.0	f1_c57bl6.idr	intron (NM_133218, intron 2 of 8)	intron (NM_133218, intron 2 of 8)	85591.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	2.0	8.0	17.5	3.5	4.0	4.5
Merged-chr11-3450224-1	chr11	3449724	3450724	+	578.0	f0_balb.idr	intron (NM_145355, intron 1 of 7)	intron (NM_145355, intron 1 of 7)	-2213.0	NR_028317	71523.0	Mm.72795	NM_027820	ENSMUSG00000034587	8430429K09Rik	-	RIKEN cDNA 8430429K09 gene	ncRNA	2.0	2.5	1.0	2.0	2.5	1.0
Merged-chr19-3375507-2	chr19	3375007	3376007	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 13 of 18)	B1_Mur4|SINE|Alu	-13350.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	2.5	11.5	1.0	0.5	0.0	1.5
Merged-chr18-36683257-1	chr18	36682757	36683757	+	578.0	f1_balb.idr	3' UTR (NM_001083317, exon 4 of 4)	3' UTR (NM_001083317, exon 4 of 4)	-3891.0	NM_146085	225372.0	Mm.89673	NM_146085	ENSMUSG00000006050	Apbb3	Fe65l2|Rirl2|TR2S	amyloid beta (A4) precursor protein-binding, family B, member 3	protein-coding	0.0	0.0	0.0	4.5	0.0	1.0
Merged-chr4-136449166-2	chr4	136448667	136449667	+	578.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-20594.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	3.5	0.0	4.0	6.0	31.5	47.5
Merged-chr7-97299053-2	chr7	97298553	97299553	+	578.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010248, exon 4 of 10)	exon (NM_010248, exon 4 of 10)	26911.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0.0	0.0	3.0	0.5	3.5	0.0
Merged-chr19-45326642-2	chr19	45326142	45327142	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37092.0	NM_001360122	12234.0	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr5-31468753-2	chr5	31468253	31469253	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360001, intron 6 of 12)	intron (NM_001360001, intron 6 of 12)	16317.0	NM_001360000	269639.0	Mm.259127	NM_172993	ENSMUSG00000062761	Zfp512	2500002M11Rik|AI450173|D230008H22|Znf512	zinc finger protein 512	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53349937-2	chr11	53349437	53350437	+	578.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033565)	promoter-TSS (NM_033565)	-830.0	NM_033565	93736.0	Mm.395281	NM_033565	ENSMUSG00000049470	Aff4	AF5Q31|Alf4|Laf4l|MCEF	AF4/FMR2 family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123993399-2	chr5	123992923	123993923	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145070, intron 7 of 31)	intron (NM_145070, intron 7 of 31)	-3429.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	1.5	0.0	1.0	0.0	0.0	2.5
Merged-chr4-130817685-2	chr4	130817185	130818185	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 2 of 4)	intron (NM_011520, intron 2 of 4)	25148.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32494327-2	chr19	32493827	32494827	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010799, intron 3 of 4)	intron (NM_010799, intron 3 of 4)	8558.0	NM_010799	17330.0	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-74233255-2	chr4	74232755	74233755	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9242.0	NM_001172095	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-17081516-1	chr2	17081016	17082016	+	578.0	f0_balb.idr	Intergenic	RMER3D-int|LTR|ERVK	-67790.0	NR_040632	75069.0	Mm.50378	NR_040632		4930515L03Rik	-	RIKEN cDNA 4930515L03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97713795-1	chr11	97713295	97714295	+	578.0	f1_c57bl6.idr	TTS (NM_011971)	TTS (NM_011971)	10361.0	NM_011971	26446.0	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	1.0	1.5	5.0	5.0	2.5	1.0
Merged-chr16-32111655-2	chr16	32111155	32112155	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	11853.0	NM_025892	66994.0	Mm.22990	NM_025892	ENSMUSG00000035790	Cep19	1500031L02Rik|AI428934|AL022620	centrosomal protein 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128808805-2	chr2	128808305	128809305	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9498.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0.0	0.0	2.0	0.0	2.0	0.0
Merged-chr3-102961379-1	chr3	102960879	102961879	+	578.0	f0_balb.idr	intron (NM_201622, intron 1 of 10)	intron (NM_201622, intron 1 of 10)	2754.0	NM_201619	381463.0	Mm.331269	NM_198658	ENSMUSG00000048938	Nr1h5	Fxrb	nuclear receptor subfamily 1, group H, member 5	protein-coding	2.0	3.5	0.5	0.0	2.0	3.5
Merged-chr9-45316551-2	chr9	45316051	45317051	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2549.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	0.0	0.5	0.0	6.0	1.0	0.0
Merged-chr6-65057320-2	chr6	65056820	65057820	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007958, intron 4 of 23)	intron (NM_007958, intron 4 of 23)	14114.0	NM_001253392	13990.0	Mm.99113	NM_007958	ENSMUSG00000029920	Smarcad1	AV081750|AW226546|D6Pas1|Etl1|etl-1|mKIAA1122	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45550037-2	chr17	45549537	45550537	+	578.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013749)	promoter-TSS (NM_001013749)	-360.0	NM_001013749	210573.0	Mm.329064	NM_001013749	ENSMUSG00000096847	Tmem151b	Gm323	transmembrane protein 151B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32784173-2	chr19	32783673	32784673	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 2 of 8)	RLTR11A2|LTR|ERVK	26596.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138212995-2	chr4	138212495	138213495	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-3617.0	NM_001122896	15441.0	Mm.348429	NM_010470	ENSMUSG00000028759	Hp1bp3	Hp1bp74	heterochromatin protein 1, binding protein 3	protein-coding	2.5	7.5	3.0	1.5	4.0	9.0
Merged-chr4-59615187-1	chr4	59614687	59615687	+	578.0	f0_balb.idr	intron (NM_001301367, intron 11 of 11)	intron (NM_001301367, intron 11 of 11)	-11024.0	NM_001015681	230259.0	Mm.45688	NM_153158	ENSMUSG00000045071	E130308A19Rik	-	RIKEN cDNA E130308A19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-59472302-1	chr1	59471802	59472802	+	578.0	f0_c57.idr	Intergenic	Intergenic	-9845.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	2.5	9.0	5.5	0.0	13.0	4.0
Merged-chr8-106535031-2	chr8	106534531	106535531	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007665, intron 2 of 15)	intron (NM_007665, intron 2 of 15)	24179.0	NM_001037809	12560.0	Mm.4658	NM_007665	ENSMUSG00000061048	Cdh3	AI385538|Cadp|Cdhp|P-cadherin|Pcad	cadherin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113796329-2	chr13	113795829	113796829	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	1821.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59251150-2	chr4	59250650	59251650	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8901.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	0.0	12.0	0.0	9.0	0.0	0.0
Merged-chr3-96283408-2	chr3	96282908	96283908	+	578.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010186, exon 6 of 6)	3' UTR (NM_010186, exon 6 of 6)	10561.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	0.0	1.0	0.0	0.0	1.0	0.0
Merged-chr2-8138479-2	chr2	8137979	8138979	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-742281.0	NM_001110231	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129581520-2	chr6	129581020	129582020	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153590, intron 2 of 6)	intron (NM_153590, intron 2 of 6)	3234.0	NM_153590	243655.0	Mm.30968	NM_153590	ENSMUSG00000050241	Klre1	Klre-1|NKG2I	killer cell lectin-like receptor family E member 1	protein-coding	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr17-87140924-1	chr17	87140424	87141424	+	578.0	f0_balb.idr	Intergenic	Intergenic	33245.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	9.0	13.5	5.5	5.5	13.0	10.0
Merged-chr17-56561911-2	chr17	56561411	56562411	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-7524.0	NR_130128	100504425.0	Mm.384143	NR_130128	ENSMUSG00000110218	Gm20219	Tincr	predicted gene, 20219	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83860587-2	chr17	83860087	83861087	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6169.0	NR_155491	320021.0	Mm.379475	NR_155490		C430042M11Rik	-	RIKEN cDNA C430042M11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86803328-2	chr12	86802828	86803828	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68959.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156257678-2	chr2	156257178	156258178	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172674, intron 4 of 17)	intron (NM_172674, intron 4 of 17)	-54795.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	36.0	51.0	49.0	55.0	45.5	45.0
Merged-chr3-137975667-1	chr3	137975167	137976167	+	578.0	f0_balb.idr	intron (NM_011932, intron 1 of 8)	intron (NM_011932, intron 1 of 8)	5882.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	8.0	3.5	2.0	1.0	0.0	0.0
Merged-chr12-14149713-2	chr12	14149213	14150213	+	578.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029007, exon 2 of 2)	3' UTR (NM_029007, exon 2 of 2)	2325.0	NM_029007	105005.0	Mm.227253	NM_029007	ENSMUSG00000020607	Fam84a	2310003N02Rik|4731402F03Rik|AW125753|Nse1	family with sequence similarity 84, member A	protein-coding	1.0	1.0	0.0	0.0	2.0	0.0
Merged-chr12-35055334-1	chr12	35054834	35055834	+	578.0	f0_balb.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	8145.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	29.5	32.5	29.0	34.5	17.0	33.5
Merged-chr8-70656346-1	chr8	70655846	70656846	+	578.0	f1_c57bl6.idr	intron (NM_023217, intron 2 of 4)	intron (NM_023217, intron 2 of 4)	3392.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	0.0	3.0	0.5	1.0	0.5	2.0
Merged-chr18-61113943-1	chr18	61113443	61114443	+	578.0	f1_c57bl6.idr	intron (NM_001037859, intron 6 of 21)	intron (NM_001037859, intron 6 of 21)	-3525.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	26.5	42.5	14.5	23.5	35.0	16.5
Merged-chr4-62526647-2	chr4	62526147	62527147	+	577.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356422, intron 1 of 11)	L2b|LINE|L2	1004.0	NM_001356421	214106.0	Mm.73212	NM_177607	ENSMUSG00000058046	4933430I17Rik	bN189G18.7	RIKEN cDNA 4933430I17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148649533-2	chr5	148649033	148650033	+	577.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92307.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6677694-2	chr15	6677194	6678194	+	577.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-23391.0	NR_155272	102632231.0	Mm.444780	NR_155272		LOC102632231	-	uncharacterized LOC102632231	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80185331-2	chr12	80184831	80185831	+	577.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 8 of 20)	MLT2B4|LTR|ERVL	-52487.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54230845-4	chr14	54230331	54231331	+	577.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23098.0	NM_001113358	13135.0	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	7.5	0.5	0.0	2.0	1.5	5.0
Merged-chr7-132690935-3	chr7	132690422	132691422	+	577.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 6 of 6)	B4A|SINE|B4	80279.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99047562-2	chr7	99047062	99048062	+	577.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 6 of 14)	intron (NM_178635, intron 6 of 14)	93582.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0.0	1.0	1.0	0.0	0.0	10.0
Merged-chr11-50133111-2	chr11	50132611	50133611	+	577.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_029745, intron 1 of 20)	B1_Mus1|SINE|Alu	1751.0	NM_029745	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50333682-2	chr9	50333182	50334182	+	577.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-100500.0	NR_131161	71873.0		NR_131161	ENSMUSG00000110916	2310003N18Rik	-	RIKEN cDNA 2310003N18 gene	ncRNA	0.0	0.0	2.0	0.0	3.0	1.0
Merged-chr17-45431645-2	chr17	45431145	45432145	+	577.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_152810, intron 1 of 15)	intron (NM_152810, intron 1 of 15)	2062.0	NM_152810	71702.0	Mm.28270	NM_152810	ENSMUSG00000023932	Cdc5l	1200002I02Rik|AA408004|PCDC5RP	cell division cycle 5-like (S. pombe)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86381889-2	chr1	86381389	86382389	+	577.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6252.0	NM_010341	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-189013159-2	chr1	189012659	189013659	+	577.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5319.0	NR_153196	226823.0	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111119841-1	chr9	111119341	111120341	+	577.666687	f0_balb.idr	intron (NM_027742, intron 2 of 13)	intron (NM_027742, intron 2 of 13)	1730.0	NM_001164838	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-56042610-2	chr9	56042110	56043110	+	577.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_011992, exon 2 of 7)	exon (NM_011992, exon 2 of 7)	765.0	NM_011992	26611.0	Mm.1782	NM_011992	ENSMUSG00000032320	Rcn2	AA408742|Tcbp49	reticulocalbin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84380533-2	chr17	84380033	84381033	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 26 of 37)	RSINE1|SINE|B4	85675.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25299423-2	chr7	25298923	25299923	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1437.0	NM_001357350	18476.0	Mm.597	NM_008776	ENSMUSG00000005447	Pafah1b3	Pafahg|mus[g]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3510429-2	chr8	3509929	3510929	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053177, intron 8 of 13)	intron (NM_053177, intron 8 of 13)	-4955.0	NM_001359122	50767.0	Mm.23085	NM_015801	ENSMUSG00000004565	Pnpla6	AI661849|MSws|Nte	patatin-like phospholipase domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-30604349-2	chr15	30603849	30604849	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	MLT1G|LTR|ERVL-MaLR	431756.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	2.0	0.0	2.5	0.0	4.5	1.5
Merged-chr4-155163881-2	chr4	155163381	155164381	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	58654.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115474481-2	chr5	115473981	115474981	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151517, intron 2 of 2)	intron (NR_151517, intron 2 of 2)	8339.0	NM_001356587	18778.0	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0.0	0.0	2.0	3.0	5.5	6.5
Merged-chr2-167824143-2	chr2	167823643	167824643	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	-108184.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71858474-2	chr8	71857966	71858966	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-23602.0	NM_145624	236193.0	Mm.290790	NM_145624	ENSMUSG00000056019	Zfp709	BC021921|GIOT-4|HIT-40	zinc finger protein 709	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125177094-3	chr5	125176573	125177573	+	577.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253905, intron 1 of 42)	intron (NM_001253905, intron 1 of 42)	2141.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112610727-2	chr12	112610227	112611227	+	577.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_198411, exon 20 of 23)	exon (NM_198411, exon 20 of 23)	-9320.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50215405-2	chr17	50214905	50215905	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-23803.0	NR_131975	446210.0	Mm.378184	NM_001004437	ENSMUSG00000067103	AY702103	STDP2	cDNA sequence AY702103	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11187309-2	chr8	11186809	11187809	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-125496.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80498233-2	chr17	80497733	80498733	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17780.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139202098-2	chr5	139201598	139202598	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359496, intron 1 of 20)	ID_B1|SINE|B4	1461.0	NM_001359494	77053.0	Mm.210845	NM_024451	ENSMUSG00000036817	Sun1	4632417G13Rik|5730434D03Rik|Unc84a|mKIAA0810	Sad1 and UNC84 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107379510-2	chr3	107379010	107380010	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46221.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36488162-2	chr5	36487662	36488662	+	577.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025725)	TTS (NM_025725)	3574.0	NM_025725	66717.0	Mm.42368	NM_025725	ENSMUSG00000050677	Ccdc96	4921513E08Rik	coiled-coil domain containing 96	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-67165716-2	chr6	67165216	67166216	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101263.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-3542175-2	chr13	3541675	3542675	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008112, intron 1 of 10)	intron (NM_008112, intron 1 of 10)	4100.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	1.0	9.5	2.5	1.0	7.0	2.5
Merged-chr1-186749880-2	chr1	186749380	186750380	+	577.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026041)	promoter-TSS (NM_026041)	-522.0	NM_026041	67223.0	Mm.289841	NM_026041	ENSMUSG00000001305	Rrp15	2810430M08Rik|5430437H21Rik	ribosomal RNA processing 15 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-97206850-2	chr13	97206335	97207335	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-8478.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-68182832-2	chr7	68182332	68183332	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 5 of 20)	intron (NM_010513, intron 5 of 20)	81401.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-19826791-2	chr17	19826291	19827291	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	53428.0	NM_001104565	627636.0	Mm.469855	NM_001104565	ENSMUSG00000091771	Vmn2r103	EG627636|Vmn103	vomeronasal 2, receptor 103	protein-coding	0.5	0.0	1.0	0.5	0.0	1.0
Merged-chr10-79695030-2	chr10	79694530	79695530	+	577.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008504, exon 5 of 5)	exon (NM_008504, exon 5 of 5)	1204.0	NM_001302499	16904.0	Mm.378960	NM_008504	ENSMUSG00000054206	Gzmm	Lmet1|MMET-1	granzyme M (lymphocyte met-ase 1)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105364201-2	chr8	105363701	105364701	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081332, intron 14 of 15)	intron (NM_001081332, intron 14 of 15)	-11180.0	NM_001081333	102075.0	Mm.32034	NM_175321	ENSMUSG00000014782	Plekhg4	4931414L13Rik|AI448583|mFLJ00068	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-101741278-2	chr13	101740778	101741778	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	26939.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12226110-2	chr18	12225610	12226610	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008720, intron 1 of 24)	intron (NM_008720, intron 1 of 24)	10276.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	7.5	17.0	20.5	4.5	5.5	7.5
Merged-chr17-46682832-2	chr17	46682332	46683332	+	577.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009358)	TTS (NM_009358)	1652.0	NM_001277312	17256.0	Mm.329083	NM_010787	ENSMUSG00000002768	Mea1	Mea-1	male enhanced antigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84092016-2	chr17	84091516	84092516	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTG)n|Simple_repeat|Simple_repeat	13356.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85309788-1	chr1	85309288	85310288	+	577.5	f1_balb.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-39222.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-89386729-2	chr13	89386229	89387229	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-153907.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	14.5	2.5	0.0	9.5	5.5	5.0
Merged-chr14-31026311-2	chr14	31025811	31026811	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359857, intron 4 of 30)	intron (NM_001359857, intron 4 of 30)	6606.0	NM_001359856	66923.0	Mm.27913	NM_025847	ENSMUSG00000042323	Pbrm1	2610016F04Rik|AI507524|BAF180|Pb1	polybromo 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-29665141-2	chr4	29664641	29665641	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A2|LTR|ERVK	597062.0	NR_151693	102634169.0		NR_151693		Gm11917	-	predicted gene 11917	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6415598-2	chr19	6415098	6416098	+	577.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011242)	TTS (NM_011242)	-3140.0	NM_001205235	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108799953-2	chr3	108799453	108800453	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011504, intron 15 of 18)	intron (NM_011504, intron 15 of 18)	40549.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124935933-2	chr6	124935433	124936433	+	577.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001170341, exon 9 of 9)	3' UTR (NM_001170341, exon 9 of 9)	4545.0	NM_001170341	30853.0	Mm.29737	NM_145385	ENSMUSG00000030120	Mlf2	AI256856|AU018944|C77284	myeloid leukemia factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71225591-2	chr6	71225091	71226091	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009762, intron 4 of 8)	intron (NM_009762, intron 4 of 8)	25712.0	NM_017399	14080.0	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-64939644-2	chr16	64939144	64940144	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008310, intron 2 of 2)	intron (NM_008310, intron 2 of 2)	87643.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	4.0	3.0	5.0	0.0	1.5	2.5
Merged-chr2-124672391-2	chr2	124671891	124672891	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	18810.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26974212-2	chr8	26973712	26974712	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3124.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-63652566-2	chr18	63652066	63653066	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39793.0	NM_016792	53382.0	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58676248-2	chr16	58675748	58676748	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007757, intron 5 of 6)	intron (NM_007757, intron 5 of 6)	6040.0	NM_007757	12892.0	Mm.291519	NM_007757	ENSMUSG00000022742	Cpox	CPX|Cpo|HCP|cac|nct	coproporphyrinogen oxidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-151283305-2	chr4	151282791	151283791	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 6 of 23)	intron (NM_001081557, intron 6 of 23)	193721.0	NM_001308446	105704528.0	Mm.415128	NM_001308446	ENSMUSG00000078491	Gm13090	-	predicted gene 13090	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85698190-2	chr12	85697690	85698690	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016767, intron 2 of 2)	CpG	11470.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-115003478-2	chr2	115002983	115003983	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	340797.0	NR_040516	78193.0	Mm.189508	NR_040516	ENSMUSG00000087309	4930528P14Rik	-	RIKEN cDNA 4930528P14 gene	ncRNA	3.0	1.0	2.0	8.5	6.5	1.5
Merged-chr2-165037410-2	chr2	165036910	165037910	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2631.0	NM_144892	228869.0	Mm.233080	NM_144892	ENSMUSG00000039804	Ncoa5	CIA	nuclear receptor coactivator 5	protein-coding	0.0	0.0	2.0	5.0	0.0	2.0
Merged-chr2-91279471-2	chr2	91278971	91279971	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175123, intron 7 of 8)	intron (NM_175123, intron 7 of 8)	14356.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	0.0	8.5	2.5	0.0	11.0	2.0
Merged-chr11-116128235-2	chr11	116127732	116128732	+	577.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_178802, exon 2 of 6)	exon (NM_178802, exon 2 of 6)	2896.0	NM_178802	338364.0	Mm.439976	NM_178802	ENSMUSG00000054517	Trim65	4732463G12Rik	tripartite motif-containing 65	protein-coding	0.0	0.0	1.5	0.0	0.0	1.0
Merged-chr10-99260192-2	chr10	99259692	99260692	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3039.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-78046549-2	chr2	78046049	78047049	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4628.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144694957-2	chr3	144694457	144695457	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 9 of 10)	intron (NM_001282037, intron 9 of 10)	25378.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-149725138-2	chr3	149724638	149725638	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	450401.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-23433298-2	chr1	23432798	23433798	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-50123.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	2.0	10.0	3.5	0.0	31.0	8.5
Merged-chr5-107726066-1	chr5	107725566	107726566	+	577.5	f0_balb.idr	promoter-TSS (NM_001267621)	promoter-TSS (NM_001267621)	-261.0	NM_001267621	14581.0	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127310886-2	chr2	127310386	127311386	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25273.0	NM_010090	13537.0	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	0.0	0.0	5.0	1.0	0.0	4.5
Merged-chr13-103775164-2	chr13	103774664	103775664	+	577.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361085)	promoter-TSS (NM_001361085)	-556.0	NM_001361085	218543.0	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-74390137-2	chr13	74389637	74390637	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13571.0	NM_001081680	238722.0	Mm.461254	NM_001081680	ENSMUSG00000069184	Zfp72	Zfp74	zinc finger protein 72	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102479833-2	chr11	102479333	102480333	+	577.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001159492, exon 8 of 8)	exon (NM_001159492, exon 8 of 8)	-9950.0	NM_010575	16399.0	Mm.26646	NM_010575	ENSMUSG00000034664	Itga2b	AI172977|CD41|CD41B|GpIIb|alphaIIb	integrin alpha 2b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126106696-2	chr7	126106196	126107196	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 21 of 23)	intron (NM_028816, intron 21 of 23)	-24285.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26648603-2	chr17	26648103	26649103	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 9 of 9)	B1_Mus2|SINE|Alu	-27793.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4153140-2	chr19	4152640	4153640	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011778, intron 9 of 10)	intron (NM_011778, intron 9 of 10)	-1506.0	NM_016933	19265.0	Mm.271937	NM_016933	ENSMUSG00000045826	Ptprcap	AI605264|CD-45-AP|LPAP|LSM-1	protein tyrosine phosphatase, receptor type, C polypeptide-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91676194-2	chr6	91675694	91676694	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-7873.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32709017-2	chr16	32708517	32709517	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26869.0	NM_080457	140474.0	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding	3.5	0.0	0.0	1.0	0.0	1.5
Merged-chr15-34346985-2	chr15	34346485	34347485	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358780, intron 3 of 18)	Lx4A|LINE|L1	10887.0	NM_001256161	77358.0	Mm.402759	NM_001256161	ENSMUSG00000094447	9430069I07Rik	-	RIKEN cDNA 9430069I07 gene	protein-coding	1.5	0.0	0.0	3.5	0.0	0.0
Merged-chr13-108599446-2	chr13	108598946	108599946	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-54731.0	NM_011056	238871.0	Mm.434429	NM_011056	ENSMUSG00000021699	Pde4d	9630011N22Rik|Dpde3	phosphodiesterase 4D, cAMP specific	protein-coding	1.0	1.0	0.0	0.0	0.5	1.0
Merged-chr10-63387288-2	chr10	63386788	63387788	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013888, intron 1 of 4)	intron (NM_013888, intron 1 of 4)	725.0	NM_013888	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23659624-2	chr17	23659124	23660124	+	577.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153784)	promoter-TSS (NM_153784)	-882.0	NM_153784	212733.0	Mm.59997	NM_153784	ENSMUSG00000043782	Bicdl2	BICDR-2|Ccdc64b	BICD family like cargo adaptor 2	protein-coding	0.0	5.5	1.0	0.0	3.0	0.0
Merged-chr7-141460098-2	chr7	141459598	141460598	+	577.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025103)	promoter-TSS (NM_001025103)	-996.0	NM_001025103	213573.0	Mm.386851	NM_001025103	ENSMUSG00000048200	Cracr2b	6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a	calcium release activated channel regulator 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180419367-2	chr1	180418867	180419867	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 5 of 7)	intron (NM_001081175, intron 5 of 7)	64137.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97292164-2	chr6	97291665	97292665	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 23 of 23)	MER58A|DNA|hAT-Charlie	-39385.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	17.0	24.0	10.5	5.0	5.0	18.5
Merged-chr4-48034590-2	chr4	48034090	48035090	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10715.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38702634-2	chr16	38702134	38703134	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 1 of 11)	RSINE1|SINE|B4	10401.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106830365-2	chr1	106829865	106830865	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30810.0	NM_001360853	20724.0	Mm.268618	NM_009257	ENSMUSG00000067006	Serpinb5	1110036M19Rik|AI462524|AI646751|Maspin|PI-5|Spi7|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-6114686-1	chr8	6114186	6115186	+	577.5	f0_c57.idr	Intergenic	Intergenic	-1009399.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	0.0	1.5	2.0	0.0	0.0	0.5
Merged-chr11-116886042-2	chr11	116885542	116886542	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32042.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117325537-2	chr8	117325037	117326037	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	CT-rich|Low_complexity|Low_complexity	-23633.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-166793280-3	chr1	166792778	166793778	+	577.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-111433.0	NM_001347135	240894.0	Mm.246610	NM_172844	ENSMUSG00000026560	Fmo9	4831428F09Rik	flavin containing monooxygenase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-68205588-3	chr8	68205086	68206086	+	577.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70942.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	0.0	0.5	1.0	0.0	1.5	1.0
Merged-chr6-85904986-3	chr6	85904512	85905512	+	577.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029331)	promoter-TSS (NM_029331)	-74.0	NM_029331	75541.0	Mm.24454	NM_029331	ENSMUSG00000068299	Nat8f4	1700019G17Rik	N-acetyltransferase 8 (GCN5-related) family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-106240703-1	chr7	106240203	106241203	+	577.333313	f0_balb.idr	Intergenic	RLTR13B2|LTR|ERVK	-25363.0	NM_029000	74558.0	Mm.458429	NM_029000	ENSMUSG00000045868	Gvin1	9130002C22Rik|9830104F22Rik|Iigs1|VLIG|VLIG-1	GTPase, very large interferon inducible 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-44718689-1	chr18	44718189	44719189	+	577.333313	f0_c57.idr	intron (NM_001085373, intron 3 of 18)	intron (NM_001085373, intron 3 of 18)	-56423.0	NM_001085374	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	18.5	3.5	4.0	1.5	0.0	0.5
Merged-chr11-78159859-2	chr11	78159359	78160359	+	577.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009423, exon 7 of 7)	3' UTR (NM_009423, exon 7 of 7)	5691.0	NM_009423	22032.0	Mm.390418	NM_009423	ENSMUSG00000017386	Traf4	A530032M13Rik|CART1|msp2	TNF receptor associated factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-93593640-2	chr3	93593146	93594146	+	577.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38529.0	NM_009112	20194.0	Mm.1	NM_009112	ENSMUSG00000041959	S100a10	42C|AA409961|AL024248|CAL12|CLP11|Cal1l|p10|p11	S100 calcium binding protein A10 (calpactin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120083493-3	chr1	120083011	120084011	+	577.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9731.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	1.0	0.0	1.5	0.0	0.0	3.0
Merged-chr19-16279933-2	chr19	16279433	16280433	+	577.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 2 of 6)	Lx3A|LINE|L1	35071.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30974949-2	chr13	30974449	30975449	+	577.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025588)	promoter-TSS (NM_025588)	-902.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-102714661-1	chr3	102714161	102715161	+	577.0	f1_c57bl6.idr	Intergenic	Intergenic	-20109.0	NM_027533	70747.0	Mm.27469	NM_027533	ENSMUSG00000027858	Tspan2	6330415F13Rik|B230119D02Rik|tspan-2	tetraspanin 2	protein-coding	2.0	4.0	3.5	5.5	1.5	14.0
Merged-chr11-5109474-2	chr11	5108974	5109974	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080595, intron 14 of 14)	intron (NM_080595, intron 14 of 14)	9309.0	NM_001290493	279766.0	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	3.5	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55682398-2	chr14	55681898	55682898	+	577.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145705)	promoter-TSS (NM_145705)	-581.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70000821-1	chr8	70000321	70001321	+	577.0	f1_c57bl6.idr	Intergenic	Intergenic	-4437.0	NM_145596	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	79.5	159.5	102.5	98.5	123.5	106.5
Merged-chr16-20715508-2	chr16	20715008	20716008	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009900, intron 1 of 23)	L2b|LINE|L2	1128.0	NM_009900	12724.0	Mm.177761	NM_009900	ENSMUSG00000022843	Clcn2	AL118368|ClC-2|Clc2|nmf240	chloride channel, voltage-sensitive 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64879120-1	chr1	64878620	64879620	+	577.0	f0_balb.idr	intron (NM_001039493, intron 5 of 7)	intron (NM_001039493, intron 5 of 7)	77704.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77516451-2	chr11	77515951	77516951	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026185, intron 1 of 1)	intron (NM_026185, intron 1 of 1)	1334.0	NM_026185	67477.0	Mm.432526	NM_026185	ENSMUSG00000000686	Abhd15	1300007F04Rik	abhydrolase domain containing 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26941328-2	chr17	26940828	26941828	+	577.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281491)	promoter-TSS (NM_001281491)	-124.0	NM_001281491	240057.0	Mm.328888	NM_001281491	ENSMUSG00000067629	Syngap1	Gm1963|Syngap	synaptic Ras GTPase activating protein 1 homolog (rat)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128372305-2	chr10	128371805	128372805	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-2268.0	NM_001081040	210582.0	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-36212043-2	chr2	36211543	36212543	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18383.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84318863-2	chr18	84318363	84319363	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 7 of 8)	intron (NM_001033341, intron 7 of 8)	230705.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145758790-1	chr6	145758290	145759290	+	577.0	f1_c57bl6.idr	Intergenic	Intergenic	-49593.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	8.0	11.0	11.0	0.0	5.5	8.5
Merged-chr13-86341573-2	chr13	86341073	86342073	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	-294778.0	NM_007749	12867.0	Mm.378898	NM_007749	ENSMUSG00000017778	Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26578552-2	chr17	26578052	26579052	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	17040.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0.0	0.0	3.0	1.5	5.5	3.5
Merged-chr5-112342506-1	chr5	112342006	112343006	+	577.0	f0_balb.idr	promoter-TSS (NM_138646)	promoter-TSS (NM_138646)	534.0	NM_001359388	70118.0	Mm.172947	NM_027323	ENSMUSG00000029346	Srrd	2810002G02Rik|Srr1	SRR1 domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-150952674-2	chr5	150952174	150953174	+	577.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013823)	promoter-TSS (NM_013823)	67.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106351707-1	chr1	106351207	106352207	+	577.0	f0_c57.idr	intron (NM_133821, intron 10 of 16)	intron (NM_133821, intron 10 of 16)	179838.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-99712130-2	chr4	99711630	99712630	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-3500.0	NM_001081264	320438.0	Mm.32408	NM_001081264	ENSMUSG00000073792	Alg6	E230028F23Rik	asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-121007967-2	chr2	121007467	121008467	+	577.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010761)	promoter-TSS (NM_010761)	-441.0	NM_010761	17151.0	Mm.7838	NM_010761	ENSMUSG00000023572	Ccndbp1	AU022347|DIP1|GCIP|Maid|SECC-8|SSEC-8	cyclin D-type binding-protein 1	protein-coding	0.0	1.5	2.0	6.5	0.0	3.0
Merged-chr10-15345352-1	chr10	15344852	15345852	+	577.0	f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-446425.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43656009-2	chr7	43655509	43656509	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031181, intron 6 of 6)	intron (NM_031181, intron 6 of 6)	4152.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56788672-2	chr17	56788172	56789172	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009056, intron 5 of 16)	intron (NM_009056, intron 5 of 16)	18396.0	NM_001195673	100504446.0	Mm.46157	NM_001195673	ENSMUSG00000090273	Prr22	Gm546	proline rich 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121930774-2	chr14	121930276	121931276	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 4 of 8)	L1ME3A|LINE|L1	-15002.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	6.5	8.0	10.5	3.0	10.5	13.0
Merged-chr17-13540908-2	chr17	13540408	13541408	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045436, intron 2 of 4)	intron (NR_045436, intron 2 of 4)	13186.0	NR_045436	72578.0	Mm.46549	NR_045436	ENSMUSG00000038347	2700054A10Rik	-	RIKEN cDNA 2700054A10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-35447879-1	chr13	35447379	35448379	+	577.0	f0_balb.idr	Intergenic	L1MB2|LINE|L1	-211983.0	NM_009881	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	0.5	0.0	3.0	1.5	2.0	0.0
Merged-chr11-61678898-2	chr11	61678398	61679398	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033227, intron 10 of 15)	intron (NM_001033227, intron 10 of 15)	-5512.0	NM_178618	69640.0	Mm.458559	NM_178618	ENSMUSG00000042377	Fam83g	2310040C09Rik|AI506990|wly	family with sequence similarity 83, member G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-17983511-1	chr14	17983011	17984011	+	577.0	f1_balb.idr	intron (NM_009380, intron 1 of 6)	intron (NM_009380, intron 1 of 6)	1867.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	8.5	0.0	1.5	2.0
Merged-chr14-31408830-1	chr14	31408330	31409330	+	577.0	f0_balb.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	8847.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64794554-1	chr9	64794054	64795054	+	577.0	f0_balb.idr	Intergenic	Intergenic	-16457.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-51972744-1	chr7	51972244	51973244	+	577.0	f0_balb.idr	intron (NM_001330607, intron 7 of 7)	intron (NM_001330607, intron 7 of 7)	32970.0	NR_027704	75744.0	Mm.386823	NM_001160345	ENSMUSG00000074093	Svip	1700006C13Rik|6620401M08Rik	small VCP/p97-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-192093650-2	chr1	192093150	192094150	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1051.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-28730029-2	chr6	28729529	28730529	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 14 of 23)	T-rich|Low_complexity|Low_complexity	101718.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48307224-2	chr17	48306724	48307724	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360121, intron 2 of 4)	intron (NM_001360121, intron 2 of 4)	7186.0	NM_001360121	328833.0	Mm.329104	NM_001033405	ENSMUSG00000071068	Treml2	AW049306|Gm750|Tlt2	triggering receptor expressed on myeloid cells-like 2	protein-coding	0.0	0.0	0.0	0.0	2.5	0.0
Merged-chr11-116855880-2	chr11	116855380	116856380	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178620, intron 2 of 12)	ID_B1|SINE|B4	1880.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr4-94475498-2	chr4	94474998	94475998	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81298.0	NM_026368	67770.0	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	1.5	9.0	9.0	1.5	5.0	7.5
Merged-chr13-67871054-1	chr13	67870554	67871554	+	577.0	f0_c57.idr	Intergenic	Intergenic	7728.0	NM_001001185	408058.0	Mm.177840	NM_001001185	ENSMUSG00000064063	BC048507	-	cDNA sequence BC048507	protein-coding	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr17-10380286-2	chr17	10379786	10380786	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55684.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122159643-1	chr5	122159143	122160143	+	577.0	f1_c57bl6.idr	intron (NM_013636, intron 1 of 6)	B1_Mus1|SINE|Alu	1364.0	NM_013636	19047.0	Mm.280784	NM_013636	ENSMUSG00000004455	Ppp1cc	PP-1G|PP1|dis2m1	protein phosphatase 1, catalytic subunit, gamma isoform	protein-coding	2.0	0.0	3.5	3.0	3.5	2.0
Merged-chr10-86300853-1	chr10	86300353	86301353	+	577.0	f1_c57bl6.idr	5' UTR (NM_011595, exon 1 of 5)	5' UTR (NM_011595, exon 1 of 5)	441.0	NM_011595	21859.0	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.0	0.0	2.0	0.0	5.5	0.0
Merged-chr10-95547593-2	chr10	95547093	95548093	+	577.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027722, exon 5 of 5)	3' UTR (NM_027722, exon 5 of 5)	11728.0	NR_037212	100526463.0		NR_037212	ENSMUSG00000092867	Mir3058	mir-3058|mmu-mir-3058	microRNA 3058	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95843865-2	chr13	95843371	95844371	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	48051.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	6.0	5.0	10.5	3.0	8.0	3.5
Merged-chr16-30925743-1	chr16	30925243	30926243	+	577.0	f0_balb.idr	Intergenic	Intergenic	155689.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134674540-1	chr1	134674040	134675040	+	577.0	f1_balb.idr	intron (NM_009307, intron 2 of 9)	intron (NM_009307, intron 2 of 9)	27928.0	NM_009307	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83167663-2	chr15	83167163	83168163	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029787, intron 1 of 8)	intron (NM_029787, intron 1 of 8)	4545.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-113837202-1	chr9	113836702	113837702	+	577.0	f0_balb.idr	intron (NM_001286600, intron 3 of 34)	intron (NM_001286600, intron 3 of 34)	24616.0	NM_001286602	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	5.0	0.0	6.0	13.5	2.0	5.5
Merged-chr18-11841735-1	chr18	11841235	11842235	+	577.0	f1_balb.idr	intron (NM_022021, intron 1 of 8)	intron (NM_022021, intron 1 of 8)	-1297.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	3.0	7.0	3.0	7.0	2.0	2.5
Merged-chr18-84922226-2	chr18	84921726	84922726	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12779.0	NM_015798	50764.0	Mm.28369	NM_015798	ENSMUSG00000034391	Fbxo15	AU019763|Fbx15|ecat3	F-box protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-96087042-2	chr16	96086525	96087525	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-4597.0	NM_145125	93871.0	Mm.240871	NM_145125	ENSMUSG00000022914	Brwd1	5330419I02Rik|D530019K20Rik|G1-403-16|Wdr9|repro5	bromodomain and WD repeat domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-63305817-2	chr13	63305317	63306317	+	577.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001042673, exon 16 of 16)	3' UTR (NM_001042673, exon 16 of 16)	-4534.0	NR_037235	100526474.0		NR_037235	ENSMUSG00000092741	Mir3074-1	mmu-mir-3074-1	microRNA 3074-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-79612310-1	chr1	79611810	79612810	+	577.0	f1_balb.idr	intron (NM_183027, intron 4 of 4)	intron (NM_183027, intron 4 of 4)	59662.0	NM_183027	252903.0	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	10.5	1.5	0.5	8.0	4.5	2.5
Merged-chr4-71624009-1	chr4	71623509	71624509	+	577.0	f1_c57bl6.idr	Intergenic	L1Md_T|LINE|L1	576884.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-5953414-2	chr15	5952914	5953914	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	91290.0	NR_155428	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-46980927-1	chr13	46980427	46981427	+	577.0	f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	33923.0	NM_175340	105193.0	Mm.25593	NM_175340	ENSMUSG00000044231	Nhlrc1	AI505271|B230309E09Rik|EPM2B	NHL repeat containing 1	protein-coding	0.0	3.0	0.5	0.0	3.5	5.0
Merged-chr2-169927104-2	chr2	169926604	169927604	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36083.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	3.0	1.5	5.0	0.5	1.5	4.0
Merged-chr8-25522985-1	chr8	25522485	25523485	+	577.0	f0_balb.idr	intron (NM_001079908, intron 1 of 17)	intron (NM_001079908, intron 1 of 17)	4226.0	NM_001079908	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40024872-1	chr10	40024372	40025372	+	577.0	f0_balb.idr	intron (NM_144821, intron 1 of 3)	CpG	396.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-117821060-1	chr12	117820560	117821560	+	577.0	f1_c57bl6.idr	Intergenic	Intergenic	-22801.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	2.5	12.0	7.5	2.5	2.5	5.5
Merged-chr6-145338370-1	chr6	145337870	145338870	+	577.0	f1_balb.idr	Intergenic	Intergenic	-49255.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	2.5	13.0	4.0	7.5	0.0	7.5
Merged-chr12-69363316-1	chr12	69362816	69363816	+	577.0	f1_balb.idr	Intergenic	Intergenic	-6140.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	1.5	0.0	0.0	6.0	0.0	2.0
Merged-chr6-48473774-2	chr6	48473274	48474274	+	577.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_173428, exon 51 of 103)	exon (NM_173428, exon 51 of 103)	25545.0	NM_173428	243369.0	Mm.25039	NM_173428	ENSMUSG00000029797	Sspo	C79529|Scospondin	SCO-spondin	protein-coding	0.0	1.5	0.0	2.0	0.0	0.0
Merged-chr14-105903064-2	chr14	105902564	105903564	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6245.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51746037-2	chr3	51745537	51746537	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	L1Md_F2|LINE|L1	84858.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141641282-1	chr4	141640782	141641782	+	577.0	f1_balb.idr	intron (NM_001347237, intron 5 of 18)	intron (NM_001347237, intron 5 of 18)	-17448.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	27.5	38.0	18.0	13.0	21.5	9.0
Merged-chr9-105133469-1	chr9	105132969	105133969	+	577.0	f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1664.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	4.0	14.5	5.0	19.5	42.5	10.0
Merged-chr17-34247944-1	chr17	34247444	34248444	+	577.0	f1_c57bl6.idr	Intergenic	Intergenic	9039.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	2.0	6.5	5.0	4.0	7.5	5.0
Merged-chr14-75059104-2	chr14	75058604	75059604	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	43077.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-89888322-2	chr18	89887807	89888807	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-119171.0	NM_001039173	623279.0	Mm.447164	NM_001039173	ENSMUSG00000073514	Dok6	Dok-6	docking protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145249164-2	chr7	145248652	145249652	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_132644, intron 24 of 24)	intron (NR_132644, intron 24 of 24)	34859.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	1.5	2.5	9.0	3.0	0.0	1.0
Merged-chr10-61097548-1	chr10	61097048	61098048	+	577.0	f1_balb.idr	Intergenic	RMER13A2|LTR|ERVK	8217.0	NM_025273	13180.0	Mm.39473	NM_025273	ENSMUSG00000020098	Pcbd1	Dcoh|Pcbd|Pcd|Phs	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-15542481-2	chr15	15541981	15542981	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERVK9E_I-int|LTR|ERVK	-1235620.0	NM_009869	12565.0	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118255690-2	chr11	118255212	118256212	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7120.0	NM_011180	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100575547-2	chr13	100575047	100576047	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-22829.0	NM_001360539	18260.0	Mm.4807	NM_008756	ENSMUSG00000021638	Ocln	AI503564|Ocl	occludin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14073198-1	chr2	14072698	14073698	+	577.0	f0_balb.idr	promoter-TSS (NM_001356337)	promoter-TSS (NM_001356337)	736.0	NR_038162	70957.0	Mm.399049	NR_038162	ENSMUSG00000086657	Stamos	4921530L18Rik	signal transducing adaptor molecule (SH3 domain and ITAM motif) 1, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-91074757-1	chr5	91074257	91075257	+	577.0	f1_balb.idr	5' UTR (NM_007950, exon 1 of 5)	5' UTR (NM_007950, exon 1 of 5)	140.0	NM_007950	13874.0	Mm.4791	NM_007950	ENSMUSG00000029377	Ereg	EPR	epiregulin	protein-coding	0.0	0.0	1.0	0.0	0.0	1.5
Merged-chr4-77672979-1	chr4	77672479	77673479	+	577.0	f1_c57bl6.idr	intron (NM_011211, intron 2 of 39)	intron (NM_011211, intron 2 of 39)	538916.0	NM_011211	19266.0	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	3.0	2.5	5.5	13.0	0.0	9.0
Merged-chr7-29301420-1	chr7	29300920	29301920	+	577.0	f1_c57bl6.idr	Intergenic	Intergenic	-2585.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-85244681-2	chr13	85244181	85245181	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145452, intron 7 of 24)	AT_rich|Low_complexity|Low_complexity	44805.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61451330-1	chr18	61450830	61451830	+	577.0	f1_c57bl6.idr	Intergenic	Intergenic	33277.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	22.5	33.0	42.0	8.0	36.5	39.0
Merged-chr3-90512273-1	chr3	90511773	90512773	+	577.0	f1_balb.idr	intron (NM_011309, intron 1 of 2)	intron (NM_011309, intron 1 of 2)	2057.0	NM_011309	20193.0	Mm.24662	NM_011309	ENSMUSG00000044080	S100a1	AI266795|S100|S100a	S100 calcium binding protein A1	protein-coding	2.5	0.0	2.0	0.0	0.0	3.5
Merged-chr13-113003122-2	chr13	113002622	113003622	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9254.0	NM_001037914	622408.0	Mm.360976	NM_001037914	ENSMUSG00000074651	Mcidas	EG622408|Gm6320|Idas|Mci|Mcin	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35200216-1	chr17	35199716	35200716	+	577.0	f0_balb.idr	exon (NM_001278601, exon 3 of 3)	exon (NM_001278601, exon 3 of 3)	1791.0	NM_013693	21926.0	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	5.5	31.0	16.0	4.0	25.5	22.0
Merged-chr3-58507996-1	chr3	58507496	58508496	+	577.0	f1_balb.idr	Intergenic	Intergenic	-17825.0	NM_001005509	229317.0	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	21.5	51.5	28.0	9.0	38.0	20.0
Merged-chr8-126479561-2	chr8	126479061	126480061	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4496.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0.0	1.5	0.0	1.0	1.5	0.0
Merged-chr19-16109001-2	chr19	16108495	16109495	+	577.0	f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-23836.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	12.5	16.5	7.0	3.5	15.0	2.0
Merged-chr11-44467184-1	chr11	44466684	44467684	+	577.0	f1_balb.idr	intron (NM_024475, intron 1 of 10)	intron (NM_024475, intron 1 of 10)	3364.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	0.0	5.0	3.5	2.5	0.0	3.0
Merged-chr15-81804881-1	chr15	81804381	81805381	+	577.0	f0_balb.idr	intron (NM_153484, intron 1 of 3)	intron (NM_153484, intron 1 of 3)	2208.0	NM_153484	21685.0	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32263006-2	chr19	32262506	32263506	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168525, intron 2 of 9)	RLTR21|LTR|ERVK	-51993.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90895216-1	chr5	90894716	90895716	+	577.0	f0_balb.idr	Intergenic	Lx3C|LINE|L1	3971.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	3.5	4.5	7.0	5.5	8.5	3.0
Merged-chr17-48261325-2	chr17	48260825	48261825	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-2970.0	NM_172623	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	1.0	0.0	3.5	0.5	1.5	3.0
Merged-chr11-83545648-2	chr11	83545148	83546148	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15130.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32095-1	chr4	31595	32595	+	577.0	f1_c57bl6.idr	Intergenic	Intergenic	-3139988.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35976164-2	chr12	35975664	35976664	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-16761.0	NM_011783	23795.0	Mm.7244	NM_011783	ENSMUSG00000020581	Agr2	Agr2h|Gob-4|HAG-2|XAG-2|mAG-2	anterior gradient 2	protein-coding	5.0	5.5	1.0	0.0	5.0	0.0
Merged-chr7-73550494-1	chr7	73549994	73550994	+	577.0	f0_c57.idr	intron (NR_037569, intron 3 of 4)	intron (NR_037569, intron 3 of 4)	7901.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64611657-1	chr1	64611157	64612157	+	577.0	f0_c57.idr	intron (NM_025964, intron 2 of 2)	B1_Mus1|SINE|Alu	5511.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-26843604-1	chr1	26843104	26844104	+	577.0	f1_c57bl6.idr	Intergenic	RMER17D2|LTR|ERVK	-156144.0	NM_001033764	210940.0	Mm.297614	NM_001033764	ENSMUSG00000073722	4931408C20Rik	-	RIKEN cDNA 4931408C20 gene	protein-coding	1.5	0.0	0.5	4.0	0.0	0.0
Merged-chr7-92641136-1	chr7	92640636	92641636	+	577.0	f0_balb.idr	Intergenic	RSINE1|SINE|B4	-3994.0	NM_028665	73845.0	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	0.0	7.0	4.0	0.0	1.0	2.0
Merged-chr9-24774595-1	chr9	24774095	24775095	+	577.0	f0_balb.idr	promoter-TSS (NM_020496)	promoter-TSS (NM_020496)	-292.0	NM_001205085	57246.0	Mm.31452	NM_020496	ENSMUSG00000031965	Tbx20	9430010M06Rik|AL022859|Tbx12	T-box 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142447805-2	chr5	142447305	142448305	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 2 of 8)	intron (NM_199068, intron 2 of 8)	-16126.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-80938861-2	chr16	80938361	80939361	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-261836.0	NM_001113208	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107105406-1	chr11	107104906	107105906	+	577.0	f1_c57bl6.idr	intron (NM_001359590, intron 2 of 27)	B3|SINE|B2	26516.0	NM_176850	207165.0	Mm.343986	NM_176850	ENSMUSG00000040481	Bptf	9430093H17Rik|Falz	bromodomain PHD finger transcription factor	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr3-116118138-2	chr3	116117638	116118638	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011693, intron 5 of 8)	intron (NM_011693, intron 5 of 8)	11550.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	0.0	2.5	1.5	0.0	0.0	0.0
Merged-chr16-74664768-1	chr16	74664268	74665268	+	577.0	f1_balb.idr	intron (NM_001358493, intron 1 of 28)	intron (NM_001358493, intron 1 of 28)	-252943.0	NM_175549	268902.0	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	7.5	10.5	0.0	4.0	2.0	7.5
Merged-chr9-103634145-2	chr9	103633645	103634645	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178638, intron 2 of 5)	B4A|SINE|B4	58662.0	NM_001359465	81907.0	Mm.384704	NM_178638	ENSMUSG00000042757	Tmem108	AI462967|B130017P16Rik|R74726	transmembrane protein 108	protein-coding	3.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120275265-1	chr11	120274765	120275765	+	577.0	f1_c57bl6.idr	intron (NM_198423, intron 10 of 27)	intron (NM_198423, intron 10 of 27)	42318.0	NM_198423	268515.0	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46485857-2	chr19	46485357	46486357	+	577.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_015752, exon 12 of 12)	exon (NM_015752, exon 12 of 12)	-15791.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53266114-2	chr19	53265614	53266614	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10909.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101661790-1	chr4	101661290	101662290	+	577.0	f1_balb.idr	Intergenic	Intergenic	14007.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	5.5	10.0	6.0	16.5	14.5	5.5
Merged-chr10-91084049-2	chr10	91083552	91084552	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026166, intron 1 of 2)	B1_Mur4|SINE|Alu	1013.0	NM_026166	67454.0	Mm.252843	NM_026166	ENSMUSG00000019975	Ikbip	1200009F10Rik|1700023M03Rik|D18354|Ikip	IKBKB interacting protein	protein-coding	23.0	3.0	9.5	6.5	3.0	5.0
Merged-chr1-86536991-1	chr1	86536491	86537491	+	577.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	10434.0	NM_001360830	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106512546-1	chr1	106512046	106513046	+	577.0	f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	34085.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8728450-2	chr10	8727950	8728950	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 18 of 19)	intron (NM_175155, intron 18 of 19)	157620.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44638802-2	chr9	44638302	44639302	+	577.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_181324, exon 14 of 14)	3' UTR (NM_181324, exon 14 of 14)	33910.0	NM_181324	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-35771587-2	chr5	35771087	35772087	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177678, intron 1 of 19)	intron (NM_177678, intron 1 of 19)	13707.0	NM_001177698	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106735798-2	chr1	106735298	106736298	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027534, intron 7 of 9)	intron (NM_027534, intron 7 of 9)	-21508.0	NM_177410	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr18-39272453-1	chr18	39271953	39272953	+	577.0	f0_balb.idr	intron (NM_001361073, intron 17 of 21)	intron (NM_001361073, intron 17 of 21)	214792.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	0.0	0.0	0.0	1.5	0.0
Merged-chr10-40060869-2	chr10	40060369	40061369	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 3 of 5)	intron (NM_001114332, intron 3 of 5)	-35601.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11049607-2	chr19	11049107	11050107	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_102366, intron 1 of 2)	MLTR14|LTR|ERV1	959.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30945653-2	chr14	30945153	30946153	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2364.0	NM_001306078	16424.0	Mm.3227	NM_008406	ENSMUSG00000006529	Itih1	ITI-HC1|Intin1|Itih-1	inter-alpha trypsin inhibitor, heavy chain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59049480-2	chr15	59048980	59049980	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	32546.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-75842527-1	chr13	75842027	75843027	+	577.0	f1_c57bl6.idr	intron (NM_053108, intron 1 of 2)	B4A|SINE|B4	2641.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	3.0	4.0	12.5	2.5	11.5	6.0
Merged-chr9-113706310-2	chr9	113705810	113706810	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164678, intron 1 of 17)	RSINE1|SINE|B4	1949.0	NM_001164678	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57566812-2	chr9	57566312	57567312	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022813, intron 1 of 8)	intron (NM_022813, intron 1 of 8)	5868.0	NM_022813	24044.0	Mm.286069	NM_022813	ENSMUSG00000040188	Scamp2	AI875466|Sc2	secretory carrier membrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128864434-1	chr2	128863934	128864934	+	577.0	f1_balb.idr	intron (NM_024237, intron 1 of 7)	intron (NM_024237, intron 1 of 7)	502.0	NM_024237	70370.0	Mm.5107	NM_024237	ENSMUSG00000027386	Fbln7	1600015H20Rik|AI464334|TM14	fibulin 7	protein-coding	0.0	0.0	1.0	13.0	3.5	3.0
Merged-chr15-76312890-1	chr15	76312390	76313390	+	577.0	f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-5645.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	11.0	17.0	15.5	11.0	12.5	16.0
Merged-chr6-33322991-2	chr6	33322491	33323491	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347089, intron 5 of 9)	ORR1D2|LTR|ERVL-MaLR	73863.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51481697-2	chr3	51481197	51482197	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-2269.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127188415-1	chr7	127187915	127188915	+	577.0	f1_balb.idr	Intergenic	Intergenic	7662.0	NM_001285907	70233.0	Mm.28050	NM_027353	ENSMUSG00000042502	Cd2bp2	1500011B02Rik|2410024K20Rik|AW048183	CD2 antigen (cytoplasmic tail) binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134333329-1	chr6	134332829	134333829	+	577.0	f0_balb.idr	intron (NR_153848, intron 3 of 8)	intron (NR_153848, intron 3 of 8)	-63000.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	6.5	24.5	9.0	27.0	36.0	35.5
Merged-chr1-57776946-2	chr1	57776446	57777446	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144882, intron 1 of 13)	intron (NM_144882, intron 1 of 13)	2085.0	NM_144882	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr14-55695863-2	chr14	55695363	55696363	+	576.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-14046.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99040457-2	chr7	99039957	99040957	+	576.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 6 of 14)	ORR1F|LTR|ERVL-MaLR	100687.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25268101-2	chr8	25267601	25268601	+	576.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38169.0	NR_040352	74489.0	Mm.256468	NR_040352	ENSMUSG00000110140	5430421F17Rik	-	RIKEN cDNA 5430421F17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-159305213-3	chr1	159304711	159305711	+	576.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011931, intron 11 of 19)	MTD|LTR|ERVL-MaLR	11438.0	NR_144489	100846986.0		NR_144489		Pou5f1-rs1	Gm21053|Oct4P2|Otf-3rs|Otf3-rs1|Otf3a	POU domain, class 5, transcription factor 1, related sequence 1	pseudo	0.0	2.0	7.0	3.5	4.0	1.0
Merged-chr5-114934711-3	chr5	114934203	114935203	+	576.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359946, intron 3 of 4)	MTB_Mm|LTR|ERVL-MaLR	-7499.0	NM_028211	72357.0	Mm.292672	NM_028211	ENSMUSG00000029559	2210016L21Rik	-	RIKEN cDNA 2210016L21 gene	protein-coding	1.0	1.0	6.0	0.0	1.5	0.5
Merged-chr10-20667362-2	chr10	20666862	20667862	+	576.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 1 of 12)	intron (NM_013875, intron 1 of 12)	57716.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143051508-2	chr7	143051008	143052008	+	576.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_110355, intron 1 of 4)	intron (NR_110355, intron 1 of 4)	-1242.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	0.5	16.5	8.5	4.0	14.5	8.5
Merged-chr11-32715751-2	chr11	32715251	32716251	+	576.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271347, intron 3 of 12)	intron (NM_001271347, intron 3 of 12)	73196.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-177667647-2	chr1	177667147	177668147	+	576.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24704.0	NR_037994	75589.0	Mm.86666	NR_037994	ENSMUSG00000101746	2310043L19Rik	-	RIKEN cDNA 2310043L19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-109209273-2	chr7	109208773	109209773	+	576.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34066.0	NM_001302205	109594.0	Mm.360145	NM_057173	ENSMUSG00000036111	Lmo1	Rbtn-1|Rbtn1|Ttg1	LIM domain only 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75151673-3	chr11	75151161	75152161	+	576.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 15 of 18)	intron (NM_001002764, intron 15 of 18)	16491.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-138506876-3	chr3	138506398	138507398	+	576.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17516.0	NM_175224	75624.0	Mm.26833	NM_175224	ENSMUSG00000005813	Metap1	1700029C17Rik|AW047992|mKIAA0094	methionyl aminopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr17-34971002-3	chr17	34970507	34971507	+	576.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010479, exon 1 of 1)	exon (NM_010479, exon 1 of 1)	1149.0	NM_010479	193740.0	Mm.6388	NM_010479	ENSMUSG00000091971	Hspa1a	Hsp70-3|Hsp70.3|Hsp72|hsp68|hsp70A1	heat shock protein 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-8225281-3	chr8	8224784	8225784	+	576.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	435489.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93451850-2	chr2	93451365	93452365	+	576.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040533)	promoter-TSS (NR_040533)	807.0	NM_001271462	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	1.5	2.5	0.0	0.0	10.0	3.0
Merged-chr4-8645335-2	chr4	8644835	8645835	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-45071.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23105466-2	chr16	23104966	23105966	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2002.0	NR_152586	13682.0	Mm.260084	NM_013506	ENSMUSG00000022884	Eif4a2	4833432N07Rik|BM-010|Ddx2b|Eif4|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96668846-2	chr3	96668346	96669346	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1285.0	NM_001356539	213121.0	Mm.39732	NM_001081139	ENSMUSG00000038354	Ankrd35	4732436F15Rik	ankyrin repeat domain 35	protein-coding	0.0	7.0	0.0	1.5	3.0	1.5
Merged-chr10-81090853-2	chr10	81090353	81091353	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145365, intron 5 of 11)	intron (NM_145365, intron 5 of 11)	8019.0	NM_145365	208677.0	Mm.294693	NM_145365	ENSMUSG00000035041	Creb3l3	BC010786|CREB-H|D10Bur1e	cAMP responsive element binding protein 3-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57066022-2	chr9	57065522	57066522	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045886, intron 1 of 2)	intron (NR_045886, intron 1 of 2)	5944.0	NR_045886	100038566.0	Mm.361900	NR_045886		Gm10658	-	predicted gene 10658	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67456411-2	chr17	67455911	67456911	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101920.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130082617-2	chr5	130082117	130083117	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130476, intron 1 of 5)	B4|SINE|B4	3247.0	NM_001130476	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	0.0	3.5	0.0	0.0	0.0	0.0
Merged-chr7-140940361-2	chr7	140939861	140940861	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1030.0	NR_153832	212974.0	Mm.260139	NM_145387	ENSMUSG00000062031	Pgghg	5730511L01Rik|Athl1|BC023151	protein glucosylgalactosylhydroxylysine glucosidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-58511834-2	chr3	58511334	58512334	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13987.0	NM_001005509	229317.0	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	2.5	1.5	1.0	2.0	1.0	1.0
Merged-chr15-100780137-2	chr15	100779637	100780637	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021530, intron 2 of 24)	intron (NM_021530, intron 2 of 24)	-1117.0	NM_001347102	59033.0	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	7.0	1.0	1.0	1.5	3.0	0.0
Merged-chr15-81695117-2	chr15	81694617	81695617	+	576.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164320, exon 3 of 6)	exon (NM_001164320, exon 3 of 6)	2170.0	NM_001164320	214685.0	Mm.393287	NM_001164320	ENSMUSG00000063765	Chadl	AY100452|D930017K21Rik	chondroadherin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69262605-2	chr11	69262105	69263105	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25583.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-36966945-2	chr10	36966445	36967445	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7599.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-93104225-2	chr9	93103725	93104725	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-98492.0	NR_040756	78349.0	Mm.52612	NR_040756	ENSMUSG00000100294	1700034K08Rik	-	RIKEN cDNA 1700034K08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172303490-2	chr1	172302990	172303990	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5426.0	NM_178405	98660.0	Mm.207432	NM_178405	ENSMUSG00000007097	Atp1a2	AW060654|Atpa-3|mKIAA0778	ATPase, Na+/K+ transporting, alpha 2 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180970109-2	chr1	180969609	180970609	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144794, intron 18 of 22)	intron (NM_144794, intron 18 of 22)	27591.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-56030726-1	chr12	56030226	56031226	+	576.5	f0_balb.idr	Intergenic	Intergenic	194360.0	NR_155205	52592.0	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-19535394-2	chr8	19534894	19535894	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	40297.0	NM_139220	246080.0	Mm.207067	NM_139220	ENSMUSG00000037790	Defb7	BD-7|Defb15	defensin beta 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101951255-2	chr5	101950755	101951755	+	576.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172882, exon 9 of 67)	exon (NM_172882, exon 9 of 67)	118666.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	21.0	15.0	7.5	11.0	12.0	4.5
Merged-chr10-78012585-2	chr10	78012085	78013085	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2778.0	NM_001358793	18641.0	Mm.269649	NM_008826	ENSMUSG00000020277	Pfkl	AA407869|ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver, B-type	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134188133-2	chr5	134187633	134188633	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359852, intron 1 of 14)	B1_Mus2|SINE|Alu	4095.0	NM_053266	114674.0	Mm.218744	NM_053266	ENSMUSG00000015942	Gtf2ird2	1700012P16Rik	GTF2I repeat domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-105212949-2	chr13	105212449	105213449	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360891, intron 5 of 7)	intron (NM_001360891, intron 5 of 7)	80065.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106945823-2	chr1	106945323	106946323	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199213, intron 1 of 7)	MLT1C|LTR|ERVL-MaLR	6866.0	NM_001199213	71869.0	Mm.321740	NM_027971	ENSMUSG00000059956	Serpinb12	2300003F07Rik|4833409F13Rik	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118959539-2	chr14	118959039	118960039	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008929, intron 3 of 11)	ORR1F|LTR|ERVL-MaLR	21607.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32575308-2	chr9	32574808	32575808	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33856.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129333617-2	chr2	129333102	129334102	+	576.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23630.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0.0	2.0	1.5	0.0	0.0	1.5
Merged-chr5-73537783-2	chr5	73537283	73538283	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153313, intron 7 of 9)	ORR1E-int|LTR|ERVL-MaLR	46757.0	NM_178896	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	0.0	1.0	0.0	0.0	0.0	1.0
Merged-chr7-4829763-2	chr7	4829263	4830263	+	576.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172737, exon 6 of 6)	exon (NM_172737, exon 6 of 6)	14933.0	NM_001290291	232813.0	Mm.44666	NM_172737	ENSMUSG00000053550	Shisa7	ckamp59	shisa family member 7	protein-coding	0.0	0.0	0.0	0.0	1.5	1.0
Merged-chr5-146820810-2	chr5	146820266	146821266	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12124.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	70.5	223.0	122.5	50.0	133.0	113.5
Merged-chr10-67689102-2	chr10	67688602	67689602	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117143.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-96466456-2	chr13	96465956	96466956	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042714, intron 1 of 13)	intron (NM_001042714, intron 1 of 13)	4704.0	NM_001042714	271144.0	Mm.470057	NM_001042714	ENSMUSG00000047117	Ankdd1b	9330128J19Rik	ankyrin repeat and death domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69792117-2	chr11	69791617	69792617	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009601, intron 7 of 10)	MTD|LTR|ERVL-MaLR	3820.0	NM_009601	11443.0	Mm.86425	NM_009601	ENSMUSG00000041189	Chrnb1	Achr-2|Acrb	cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-8341948-2	chr5	8341448	8342448	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 2 of 28)	B1_Mur2|SINE|Alu	26212.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81082522-2	chr15	81082022	81083022	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	22525.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	23.5	68.0	43.5	19.0	51.5	14.5
Merged-chr5-115533188-2	chr5	115532688	115533688	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	B3|SINE|B2	-26279.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-119031038-2	chr10	119030538	119031538	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152787, intron 3 of 3)	intron (NR_152787, intron 3 of 3)	19461.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-50906165-2	chr9	50905665	50906665	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178710, intron 9 of 15)	intron (NM_178710, intron 9 of 15)	49241.0	NM_001286553	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-79770178-2	chr16	79769678	79770678	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-229198.0	NM_030146	78654.0		NM_030146		1700066C05Rik	-	RIKEN cDNA 1700066C05 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54989862-2	chr11	54989362	54990362	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 19 of 24)	intron (NR_138556, intron 19 of 24)	-26922.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-99964300-2	chr14	99963800	99964800	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010636, intron 4 of 6)	intron (NM_010636, intron 4 of 6)	185496.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10393626-2	chr17	10393126	10394126	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-62590.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4839060-2	chr16	4838560	4839560	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030192, intron 1 of 15)	L1MB7|LINE|L1	3644.0	NM_030192	78809.0	Mm.325551	NM_030192	ENSMUSG00000022518	4930562C15Rik	-	RIKEN cDNA 4930562C15 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-96200425-2	chr16	96199925	96200925	+	576.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015825)	promoter-TSS (NM_015825)	-45.0	NM_015825	50795.0	Mm.28638	NM_015825	ENSMUSG00000040666	Sh3bgr	5430437A18Rik	SH3-binding domain glutamic acid-rich protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74793038-2	chr1	74792538	74793538	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009518, intron 1 of 3)	intron (NM_009518, intron 1 of 3)	1019.0	NM_009518	22409.0	Mm.5130	NM_009518	ENSMUSG00000026167	Wnt10a	-	wingless-type MMTV integration site family, member 10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80961677-2	chr10	80961177	80962177	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	31586.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79629110-2	chr12	79628610	79629610	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	295623.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-21937923-2	chr3	21937423	21938423	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138729.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	12.0	4.0	1.5	0.0	9.0
Merged-chr2-29653253-2	chr2	29652753	29653753	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	33533.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163093095-2	chr2	163092595	163093595	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3494.0	NM_026630	68236.0	Mm.33648	NM_026630	ENSMUSG00000070708	Gtsf1l	2410116G06Rik	gametocyte specific factor 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28336830-2	chr7	28336330	28337330	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013676, intron 2 of 29)	ID4_|SINE|ID	1889.0	NM_013676	20924.0	Mm.285906	NM_013676	ENSMUSG00000003435	Supt5	AL033283|AL033321|AU019549|Spt5|Supt5h	suppressor of Ty 5	protein-coding	0.0	3.0	1.5	0.0	3.0	1.5
Merged-chr4-7456415-2	chr4	7455915	7456915	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104273.0	NR_040645	71510.0	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-82876749-2	chr9	82876249	82877249	+	576.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081216, exon 37 of 40)	exon (NM_001081216, exon 37 of 40)	46943.0	NM_001168240	65099.0	Mm.41415	NM_022986	ENSMUSG00000032251	Irak1bp1	4921528N06Rik|AI851240|Aabp3|Aip70|Simpl	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding	0.0	5.0	0.0	0.0	4.5	4.0
Merged-chr16-95730353-2	chr16	95729853	95730853	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27946.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132803018-2	chr4	132802518	132803518	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-6654.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11048684-2	chr19	11048184	11049184	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_102366, intron 1 of 2)	MLTR14|LTR|ERV1	1882.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-43170546-2	chr15	43170046	43171046	+	576.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172815, exon 1 of 6)	5' UTR (NM_172815, exon 1 of 6)	272.0	NM_001357957	239405.0	Mm.193274	NM_172815	ENSMUSG00000051920	Rspo2	2610028F08Rik|AA673245|D430027K22|ftls	R-spondin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135458029-2	chr5	135457529	135458529	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 3 of 30)	intron (NM_146001, intron 3 of 30)	-63483.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51523048-2	chr10	51522548	51523548	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32150.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70746032-2	chr17	70745532	70746532	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	LTR73|LTR|ERV1	100745.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	2.5	1.5	0.5	0.5	0.0	1.0
Merged-chr10-36762952-2	chr10	36762452	36763452	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253355, intron 4 of 5)	B4A|SINE|B4	-211592.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12939824-2	chr18	12939324	12940324	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207530, intron 1 of 27)	B4|SINE|B4	2017.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102068704-2	chr5	102068204	102069204	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	1217.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-7964571-2	chr15	7964071	7965071	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081402, intron 10 of 17)	MTC|LTR|ERVL-MaLR	134638.0	NM_001358788	545085.0	Mm.321312	NM_001081402	ENSMUSG00000039828	Wdr70	4833422F06Rik	WD repeat domain 70	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23301939-2	chr11	23301439	23302439	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-4956.0	NM_001190401	17847.0	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6351660-2	chr19	6351160	6352160	+	576.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001291787, exon 27 of 32)	exon (NM_001291787, exon 27 of 32)	5180.0	NR_105955	102465598.0		NR_105955	ENSMUSG00000099230	Mir6989	Gm27885|mmu-mir-6989	microRNA 6989	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-92066078-2	chr6	92065578	92066578	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172731, intron 13 of 20)	intron (NM_172731, intron 13 of 20)	-25340.0	NM_011630	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80855585-2	chr7	80855085	80856085	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6523.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-127221712-2	chr1	127221212	127222212	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	B3|SINE|B2	16726.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	6.5	8.0	11.0	3.5	11.0	3.0
Merged-chr17-92817289-2	chr17	92816789	92817789	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-381728.0	NM_001315503	11516.0	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-134557284-2	chr7	134556784	134557784	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-113403.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	4.0	0.0	0.0	4.0	0.0	0.0
Merged-chr17-13214063-2	chr17	13213563	13214563	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7125.0	NM_013741	27263.0	Mm.371809	NM_013741	ENSMUSG00000073458	Smok2a	Smok2	sperm motility kinase 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90435906-2	chr3	90435406	90436406	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-2270.0	NM_178876	229543.0	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	0.5	2.5	2.5	1.0	3.0	2.5
Merged-chr9-44346647-2	chr9	44346147	44347147	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2419.0	NM_013551	15288.0	Mm.247676	NM_013551	ENSMUSG00000032126	Hmbs	PBGD|T25658|Ups|Uros1	hydroxymethylbilane synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	6.0
Merged-chr8-95100526-2	chr8	95100026	95101026	+	576.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028805)	TTS (NM_028805)	12816.0	NM_001145832	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88231239-2	chr1	88230739	88231739	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 5 of 41)	L2c|LINE|L2	4219.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122105744-2	chr14	122105244	122106244	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_015586, intron 1 of 3)	intron (NR_015586, intron 1 of 3)	1230.0	NR_015586	319727.0	Mm.215552	NR_015586		A330035P11Rik	-	RIKEN cDNA A330035P11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120567175-2	chr9	120566675	120567675	+	576.333374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178676, exon 11 of 11)	3' UTR (NM_178676, exon 11 of 11)	-4342.0	NM_025974	67115.0	Mm.289810	NM_025974	ENSMUSG00000025794	Rpl14	3100001N19Rik|AA407502|AL022816|CAG-ISL-7|CTG-B33|L14	ribosomal protein L14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123088434-2	chr5	123087934	123088934	+	576.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039723, intron 1 of 11)	intron (NM_001039723, intron 1 of 11)	12159.0	NM_001039723	330189.0	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84620062-2	chr2	84619562	84620562	+	576.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_007615, exon 6 of 20)	exon (NM_007615, exon 6 of 20)	29418.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80347011-2	chr7	80346511	80347511	+	576.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026812)	TTS (NM_026812)	3874.0	NM_026812	68695.0	Mm.21171	NM_026812	ENSMUSG00000030532	Hddc3	1110033O09Rik|C86475|MESH1	HD domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30683840-2	chr2	30683340	30684340	+	576.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5829.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81354351-2	chr10	81353851	81354851	+	576.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3140.0	NM_028657	73822.0	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1|gr	major facilitator superfamily domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88652970-2	chr8	88652470	88653470	+	576.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_145857, exon 2 of 13)	exon (NM_145857, exon 2 of 13)	5623.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	0.0	2.0	12.0	16.0	1.5	5.0
Merged-chr10-120364261-3	chr10	120363775	120364775	+	576.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010441, exon 5 of 5)	exon (NM_010441, exon 5 of 5)	-25248.0	NR_040626	320626.0	Mm.446091	NR_040626	ENSMUSG00000090191	9230105E05Rik	-	RIKEN cDNA 9230105E05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-84106200-2	chr6	84105700	84106700	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 22 of 54)	intron (NM_001077694, intron 22 of 54)	86814.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132160187-2	chr1	132159687	132160687	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20502.0	NM_008795	18557.0	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96365861-2	chr11	96365361	96366361	+	576.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008266, exon 1 of 2)	exon (NM_008266, exon 1 of 2)	103.0	NM_008266	15407.0	Mm.890	NM_008266	ENSMUSG00000018973	Hoxb1	Hox-2.9	homeobox B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114260750-2	chr6	114260250	114261250	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21885.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-181538396-1	chr1	181537896	181538896	+	576.0	f0_balb.idr	Intergenic	Intergenic	-26945.0	NM_207280	403180.0	Mm.220754	NM_207280	ENSMUSG00000050625	Ccdc121	6530421E24Rik|Gm755	coiled-coil domain containing 121	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32934831-1	chr5	32934331	32935331	+	576.0	f0_c57.idr	intron (NM_001360014, intron 24 of 40)	B2_Mm2|SINE|B2	71110.0	NM_001170567	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	11.0	12.0	15.5	9.0	14.0	4.5
Merged-chr10-91189027-2	chr10	91188527	91189527	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR41|LTR|ERV1	-17408.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122251172-1	chr3	122250672	122251672	+	576.0	f0_balb.idr	intron (NM_008129, intron 1 of 6)	intron (NM_008129, intron 1 of 6)	5615.0	NM_008129	14630.0	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123833216-2	chr5	123832719	123833719	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	32297.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	3.5	12.0	20.5	1.0	8.5	6.5
Merged-chr11-116785042-1	chr11	116784542	116785542	+	576.0	f0_balb.idr	Intergenic	RLTR24B_MM|LTR|ERV1	-9535.0	NM_011371	20445.0	Mm.436887	NM_011371	ENSMUSG00000009588	St6galnac1	Siat7a	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1	protein-coding	3.0	11.0	17.0	44.0	88.5	79.0
Merged-chr2-130636169-2	chr2	130635669	130636669	+	576.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_197945, exon 4 of 5)	exon (NM_197945, exon 4 of 5)	-6131.0	NM_001255994	140629.0	Mm.486003	NM_080562	ENSMUSG00000027300	Ubox5	1500010O06Rik|C330018L13Rik|Rnf37|UIP5|Ubce7ip5|Ube7ip5	U box domain containing 5	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr16-90397595-2	chr16	90397095	90398095	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015755, intron 1 of 10)	intron (NM_015755, intron 1 of 10)	11198.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26970541-2	chr2	26970041	26971041	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-2875.0	NM_001290464	279028.0	Mm.330084	NM_001001322	ENSMUSG00000014852	Adamts13	ADAM-TS13|ADAMTS-13|Gm710|vWF-CP	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-66858393-1	chr4	66857893	66858893	+	576.0	f0_balb.idr	Intergenic	Intergenic	30842.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93123350-1	chr10	93122850	93123850	+	576.0	f0_c57.idr	Intergenic	PB1D10|SINE|Alu	-37526.0	NM_146239	237459.0	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding	35.0	72.0	42.5	11.0	13.0	21.5
Merged-chr17-44252870-1	chr17	44252370	44253370	+	576.0	f1_balb.idr	intron (NM_172621, intron 4 of 5)	B3A|SINE|B2	64298.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	10.5	4.0	4.5	0.0	0.0	0.0
Merged-chr9-120030397-2	chr9	120029897	120030897	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	-6799.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	8.0	1.5	3.0	6.5	0.0	2.0
Merged-chr7-67430210-1	chr7	67429710	67430710	+	576.0	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-57352.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141641810-1	chr4	141641310	141642310	+	576.0	f0_balb.idr	intron (NM_001347237, intron 4 of 18)	intron (NM_001347237, intron 4 of 18)	-17976.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	40.0	17.0	47.5	14.5	3.5	2.0
Merged-chr6-139334858-1	chr6	139334358	139335358	+	576.0	f1_balb.idr	Intergenic	Lx2|LINE|L1	-12282.0	NR_045149	70962.0	Mm.410833	NR_045149	ENSMUSG00000108128	4922502N22Rik	-	RIKEN cDNA 4922502N22 gene	ncRNA	0.5	2.5	2.0	5.5	0.0	0.0
Merged-chr10-21997859-1	chr10	21997359	21998359	+	576.0	f0_c57.idr	intron (NM_011361, intron 9 of 11)	intron (NM_011361, intron 9 of 11)	3193.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	12.5	13.0	10.0	7.5	19.5	7.5
Merged-chr5-16442350-2	chr5	16441850	16442850	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111145.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122631890-1	chr6	122631390	122632390	+	576.0	f0_c57.idr	Intergenic	Intergenic	5466.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	0.0	0.0	1.0	0.0	0.0	0.5
Merged-chr8-105343439-2	chr8	105342939	105343939	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	4531.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27646443-2	chr15	27645943	27646943	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-15750.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129522839-1	chr4	129522339	129523339	+	576.0	f1_c57bl6.idr	intron (NM_008228, intron 5 of 13)	intron (NM_008228, intron 5 of 13)	9258.0	NM_010807	17357.0	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	2.5	0.0	0.0	0.0	6.5	0.0
Merged-chr4-145683319-2	chr4	145682819	145683819	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001103158, intron 2 of 4)	Lx3B|LINE|L1	12622.0	NM_001103158	100041379.0	Mm.276881	NM_001103158	ENSMUSG00000058186	Zfp980	Gm13242	zinc finger protein 980	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60941903-2	chr10	60941403	60942403	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3771.0	NR_033616	73616.0	Mm.159038	NR_033616	ENSMUSG00000037247	Pldi	1700125F08Rik|Poldi	polymorphic derived intron containing	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93757779-1	chr1	93757279	93758279	+	576.0	f0_balb.idr	intron (NM_174874, intron 1 of 12)	Lx9|LINE|L1	2746.0	NM_174874	66615.0	Mm.29087	NM_174874	ENSMUSG00000026280	Atg4b	2510009N07Rik|AW048066|Apg4b|Atg4bl|Autl1	autophagy related 4B, cysteine peptidase	protein-coding	6.0	4.0	6.5	5.5	6.0	8.0
Merged-chr7-119894978-2	chr7	119894478	119895478	+	576.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285959)	promoter-TSS (NM_001285959)	480.0	NM_173408	233805.0	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-125562109-2	chr1	125561629	125562629	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028787, intron 1 of 15)	ID_B1|SINE|B4	1127.0	NM_028787	74150.0	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44465498-2	chr7	44464998	44465998	+	576.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026690)	promoter-TSS (NM_026690)	63.0	NM_026690	68352.0	Mm.88478	NM_026690	ENSMUSG00000038704	Aspdh	0610012D14Rik	aspartate dehydrogenase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-115799474-1	chr3	115798974	115799974	+	576.0	f0_balb.idr	Intergenic	Intergenic	-84419.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	1.0	0.0	1.5	0.0	0.0	1.0
Merged-chr5-144207726-2	chr5	144207226	144208226	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027410, intron 11 of 24)	intron (NM_027410, intron 11 of 24)	15889.0	NM_001356992	70381.0	Mm.239412	NM_027410	ENSMUSG00000066621	Tecpr1	2210010N04Rik|mKIAA1358	tectonin beta-propeller repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53334969-2	chr19	53334469	53335469	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008543, intron 2 of 5)	intron (NM_001008543, intron 2 of 5)	4561.0	NM_001008543	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-51924464-2	chr15	51923964	51924964	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47023.0	NM_030132	78581.0	Mm.176347	NM_030132	ENSMUSG00000022313	Utp23	1700010I21Rik|AI662478|BB238373|D530033C11Rik	UTP23 small subunit processome component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-59343773-2	chr3	59343273	59344273	+	576.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001162884, exon 1 of 7)	5' UTR (NM_001162884, exon 1 of 7)	483.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-59447403-2	chr5	59446903	59447903	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR41C|LTR|ERV1	538599.0	NR_040683	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-176853026-1	chr1	176852526	176853526	+	576.0	f0_c57.idr	intron (NM_001357390, intron 8 of 18)	intron (NM_001357390, intron 8 of 18)	-16893.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	21.0	12.5	15.5	18.5	28.5	29.5
Merged-chr15-62392031-1	chr15	62391531	62392531	+	576.0	f0_balb.idr	Intergenic	Intergenic	-172580.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	4.5	2.5	7.0	12.0	21.5	24.0
Merged-chr2-167641215-2	chr2	167640715	167641715	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9210.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-10712030-1	chr18	10711530	10712530	+	576.0	f1_c57bl6.idr	TTS (NR_045379)	TTS (NR_045379)	5170.0	NR_045379	75370.0	Mm.159511	NR_045379	ENSMUSG00000097387	4930563E18Rik	-	RIKEN cDNA 4930563E18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93481697-2	chr10	93481197	93482197	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313897, intron 16 of 17)	Charlie4z|DNA|hAT-Charlie	-7071.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35146564-1	chr7	35146064	35147064	+	576.0	f1_balb.idr	Intergenic	Intergenic	27271.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	2.0	0.0	0.0	0.0	3.0	0.0
Merged-chr1-28054223-1	chr1	28053723	28054723	+	576.0	f1_c57bl6.idr	Intergenic	Intergenic	170177.0	NR_151583	433281.0	Mm.329306	NR_151583	ENSMUSG00000101514	Gm5524	AI875557|EG433281	predicted gene 5524	ncRNA	0.5	0.0	0.0	0.0	2.5	3.0
Merged-chr6-108451642-2	chr6	108451142	108452142	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-38101.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	1.0	0.0	0.0	1.0	0.0	0.0
Merged-chr17-31103194-1	chr17	31102694	31103694	+	576.0	f1_balb.idr	intron (NM_009593, intron 5 of 14)	intron (NM_009593, intron 5 of 14)	26417.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	3.0	16.0	13.0	7.0	5.0	12.0
Merged-chr2-126399888-1	chr2	126399388	126400388	+	576.0	f1_c57bl6.idr	intron (NM_001359975, intron 12 of 27)	Tigger7|DNA|TcMar-Tigger	91665.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	0.0	1.0	0.0	2.0	0.0	3.0
Merged-chr2-163987109-1	chr2	163986609	163987609	+	576.0	f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-8088.0	NM_018753	54401.0	Mm.34319	NM_018753	ENSMUSG00000018326	Ywhab	1300003C17Rik|14-3-3b	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	protein-coding	8.5	3.5	7.0	1.5	1.5	2.5
Merged-chr19-21280080-3	chr19	21279602	21280602	+	576.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009551, intron 5 of 5)	intron (NM_009551, intron 5 of 5)	7824.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	1.5	2.0	0.0	1.5	1.0	0.0
Merged-chr7-35546063-1	chr7	35545563	35546563	+	576.0	f0_balb.idr	Intergenic	MER20|DNA|hAT-Charlie	-8319.0	NM_028034	71981.0	Mm.47904	NM_028034	ENSMUSG00000030491	Tdrd12	2410004F06Rik|2410070K17Rik|ECAT8|EG434165|G1-476-14|repro23	tudor domain containing 12	protein-coding	1.0	0.5	0.0	0.0	1.5	6.0
Merged-chr11-70041701-2	chr11	70041201	70042201	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007864, intron 12 of 19)	intron (NM_007864, intron 12 of 19)	-12423.0	NM_001291131	11889.0	Mm.6559	NM_009714	ENSMUSG00000020884	Asgr1	ASGPR1|Asgr|Asgr-1|HL-1	asialoglycoprotein receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36690796-2	chr1	36690296	36691296	+	576.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009942)	promoter-TSS (NM_009942)	-691.0	NM_009942	12859.0	Mm.180182	NM_009942	ENSMUSG00000061518	Cox5b	-	cytochrome c oxidase subunit Vb	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-17737436-2	chr14	17736936	17737936	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 1 of 9)	B4A|SINE|B4	76476.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-126932035-1	chr2	126931535	126932535	+	576.0	f0_balb.idr	intron (NM_023220, intron 1 of 14)	intron (NM_023220, intron 1 of 14)	1200.0	NM_023220	66552.0	Mm.269928	NM_023220	ENSMUSG00000027366	Sppl2a	2010106G01Rik|C130089K23Rik	signal peptide peptidase like 2A	protein-coding	6.0	85.0	39.5	20.0	28.0	36.5
Merged-chr4-16165959-2	chr4	16165459	16166459	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045765, intron 1 of 6)	intron (NR_045765, intron 1 of 6)	1849.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	0.0	0.0	2.0	0.0	0.0	1.5
Merged-chr11-102292216-2	chr11	102291716	102292716	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001098836, intron 10 of 12)	intron (NM_001098836, intron 10 of 12)	4413.0	NM_001098836	217218.0	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36462024-1	chr1	36461524	36462524	+	576.0	f0_balb.idr	Intergenic	Intergenic	-9573.0	NM_033570	94220.0	Mm.422638	NM_033570	ENSMUSG00000037408	Cnnm4	5430430O18Rik|Acdp4	cyclin M4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34100226-1	chr8	34099726	34100726	+	576.0	f1_balb.idr	intron (NM_001293759, intron 2 of 7)	intron (NM_001293759, intron 2 of 7)	7588.0	NM_001293758	22428.0	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	0.0	3.0	0.0	4.0	0.0	2.5
Merged-chr4-40271581-2	chr4	40271081	40272081	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033305, intron 3 of 3)	intron (NM_001033305, intron 3 of 3)	-1740.0	NM_134097	106021.0	Mm.251548	NM_134097	ENSMUSG00000036822	Topors	AW105885|LUN|TP53BPL|p53BP3/LUN	topoisomerase I binding, arginine/serine-rich	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95336519-2	chr8	95336019	95337019	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133954, intron 2 of 6)	intron (NM_133954, intron 2 of 6)	4235.0	NM_133954	101985.0	Mm.29069	NM_133954	ENSMUSG00000031792	Usb1	AA960436	U6 snRNA biogenesis 1	protein-coding	0.0	0.0	0.0	2.0	0.0	0.5
Merged-chr17-8309578-2	chr17	8309078	8310078	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_073374, intron 1 of 4)	B1_Mur4|SINE|Alu	-1510.0	NM_001357890	106489.0	Mm.311080	NM_134114	ENSMUSG00000073468	Sft2d1	5630401J11Rik|AA409698	SFT2 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-97897923-2	chr16	97897423	97898423	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_174847, intron 2 of 13)	intron (NM_174847, intron 2 of 13)	-20632.0	NR_105929	102465581.0		NR_105929	ENSMUSG00000105138	Mir6964	mmu-mir-6964	microRNA 6964	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-16169498-2	chr2	16168998	16169998	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310455, intron 35 of 38)	intron (NM_001310455, intron 35 of 38)	-186806.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19088385-2	chr7	19087885	19088885	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_032418, intron 8 of 14)	B1_Mur1|SINE|Alu	1557.0	NR_037282	100526504.0		NR_037282	ENSMUSG00000092659	Mir3100	mir-3100|mmu-mir-3100	microRNA 3100	ncRNA	3.0	6.5	5.5	3.0	5.5	0.0
Merged-chr5-123723347-1	chr5	123722847	123723847	+	576.0	f1_c57bl6.idr	Intergenic	Intergenic	-2303.0	NM_027494	70650.0	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	2.0	0.0	0.0	1.0	5.5	0.5
Merged-chr10-94047266-1	chr10	94046766	94047766	+	576.0	f0_c57.idr	intron (NM_053072, intron 2 of 20)	intron (NM_053072, intron 2 of 20)	11265.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	20.5	37.5	41.0	9.5	12.0	6.5
Merged-chr9-110673229-1	chr9	110672729	110673729	+	576.0	f1_balb.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	16726.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	0.0	0.5	1.0	0.0	2.0	1.0
Merged-chr6-114383259-1	chr6	114382759	114383759	+	576.0	f0_balb.idr	Intergenic	Intergenic	-14677.0	NM_001317125	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100125137-2	chr15	100124637	100125637	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 2 of 37)	intron (NM_001159361, intron 2 of 37)	-29259.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55738312-2	chr19	55737811	55738811	+	576.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-3499.0	NM_001331147	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.5	4.5	4.5	21.0	11.0
Merged-chr9-66937606-2	chr9	66937106	66938106	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8480.0	NM_001311101	67941.0	Mm.30120	NM_026467	ENSMUSG00000036781	Rps27l	1810034D23Rik	ribosomal protein S27-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81548370-2	chr10	81547870	81548870	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-3324.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105963236-1	chr1	105962736	105963736	+	576.0	f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	27046.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	10.0	12.5	5.5	14.5	19.0	4.0
Merged-chr8-36931826-1	chr8	36931326	36932326	+	576.0	f0_c57.idr	intron (NM_001194940, intron 2 of 17)	intron (NM_001194940, intron 2 of 17)	20616.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	2.5	24.0	3.5	0.5	37.5	9.5
Merged-chr5-43871528-1	chr5	43871028	43872028	+	576.0	f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	RSINE1|SINE|B4	2719.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	109.5	331.5	223.0	122.5	366.5	202.0
Merged-chr19-38597660-1	chr19	38597160	38598160	+	576.0	f1_balb.idr	intron (NM_019588, intron 1 of 31)	intron (NM_019588, intron 1 of 31)	73463.0	NM_019588	74055.0	Mm.34031	NM_019588	ENSMUSG00000024998	Plce1	4933403A21Rik|PLCepsilon|Plce|mKIAA1516	phospholipase C, epsilon 1	protein-coding	0.5	0.0	0.0	2.5	0.0	0.0
Merged-chr3-109352206-2	chr3	109351706	109352706	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 1 of 26)	intron (NM_020505, intron 1 of 26)	11523.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-21111630-1	chr2	21111130	21112130	+	576.0	f0_balb.idr	Intergenic	Intergenic	93735.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51278778-2	chr3	51278278	51279278	+	576.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_073429)	TTS (NR_073429)	-1264.0	NM_001291062	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-24417404-2	chr8	24416904	24417904	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21542.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15229945-2	chr17	15229445	15230445	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10838.0	NR_046164	328747.0	Mm.256835	NR_046164	ENSMUSG00000097624	Gm5091	C330048F19	predicted gene 5091	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120901340-2	chr11	120900840	120901840	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027745, intron 7 of 18)	L1MB3|LINE|L1	31532.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-48598215-1	chr1	48597715	48598715	+	576.0	f0_balb.idr	Intergenic	Intergenic	-646401.0	NR_151585	442837.0	Mm.337149	NM_001002792	ENSMUSG00000051616	C230029F24Rik	-	RIKEN cDNA C230029F24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40609774-1	chr19	40609274	40610274	+	576.0	f1_c57bl6.idr	intron (NM_026260, intron 3 of 13)	intron (NM_026260, intron 3 of 13)	2441.0	NM_026260	67590.0	Mm.60758	NM_026260	ENSMUSG00000025008	Tctn3	4930521E07Rik|AI197391|Tect3	tectonic family member 3	protein-coding	3.0	1.0	0.0	1.0	5.5	1.5
Merged-chr4-34451982-2	chr4	34451482	34452482	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98633.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120359385-2	chr14	120358885	120359885	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 2 of 8)	B4A|SINE|B4	52933.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	1.0	7.0	2.5	1.0	7.5	2.5
Merged-chr13-73762350-2	chr13	73761850	73762850	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1310.0	NM_001360694	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102826975-1	chr2	102826475	102827475	+	576.0	f1_c57bl6.idr	intron (NM_001039150, intron 11 of 13)	intron (NM_001039150, intron 11 of 13)	74690.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	1.0	2.0	6.5	1.5	13.0	0.5
Merged-chr16-20734024-2	chr16	20733524	20734524	+	576.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009893, exon 3 of 23)	exon (NM_009893, exon 3 of 23)	487.0	NM_009379	21832.0	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-73326038-1	chr11	73325538	73326538	+	576.0	f0_balb.idr	Intergenic	Intergenic	-1401.0	NM_023113	11484.0	Mm.293574	NM_023113	ENSMUSG00000020774	Aspa	Acy-2|Acy2|nur7	aspartoacylase	protein-coding	25.0	40.0	34.0	17.0	40.5	23.0
Merged-chr4-135054610-1	chr4	135054110	135055110	+	576.0	f0_balb.idr	Intergenic	Intergenic	-66035.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155894723-1	chr4	155894223	155895223	+	576.0	f1_balb.idr	intron (NM_207223, intron 1 of 24)	intron (NM_207223, intron 1 of 24)	2848.0	NM_207223	140500.0	Mm.219591	NM_207223	ENSMUSG00000029033	Acap3	Centb5|Kiaa1716-hp|mKIAA1716	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	protein-coding	3.5	2.5	7.5	24.0	44.5	40.5
Merged-chr8-120624819-2	chr8	120624319	120625319	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308449, intron 2 of 3)	intron (NM_001308449, intron 2 of 3)	9563.0	NM_197988	68918.0	Mm.473736	NM_197988	ENSMUSG00000043687	1190005I06Rik	-	RIKEN cDNA 1190005I06 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-87328382-1	chr18	87327882	87328882	+	576.0	f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	616071.0	NM_001361145	12405.0	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-72534140-2	chr14	72533667	72534667	+	576.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	175836.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107234197-2	chr3	107233697	107234697	+	576.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001256174)	TTS (NM_001256174)	3583.0	NM_001256174	319929.0	Mm.30453	NM_001256174	ENSMUSG00000094613	A630076J17Rik	-	RIKEN cDNA A630076J17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122460292-1	chr8	122459792	122460792	+	576.0	f1_c57bl6.idr	intron (NM_013914, intron 1 of 2)	intron (NM_013914, intron 1 of 2)	400.0	NM_013914	30927.0	Mm.103673	NM_013914	ENSMUSG00000006587	Snai3	AI643946|Smuc|Zfp293	snail family zinc finger 3	protein-coding	5.5	2.0	0.0	0.5	0.0	0.0
Merged-chr7-28545378-1	chr7	28544878	28545878	+	576.0	f1_c57bl6.idr	intron (NM_001081115, intron 3 of 5)	intron (NM_001081115, intron 3 of 5)	1876.0	NM_001081115	233038.0	Mm.224815	NM_001081115	ENSMUSG00000047586	Nccrp1	1190020J12Rik|Gm163|NCCRP-1	non-specific cytotoxic cell receptor protein 1 homolog (zebrafish)	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr2-12881195-1	chr2	12880695	12881695	+	576.0	f0_balb.idr	Intergenic	Intergenic	-42846.0	NM_008961	19212.0	Mm.229322	NM_008961	ENSMUSG00000026730	Pter	AI790318|Mpr56-1	phosphotriesterase related	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50769648-2	chr11	50769148	50770148	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175643, intron 5 of 21)	intron (NM_175643, intron 5 of 21)	58083.0	NM_013922	30944.0	Mm.103674	NM_013922	ENSMUSG00000044807	Zfp354c	5330421P20Rik|AJ18|AW743325|Kid3|Tcf17l2|Znf354c|mKIAA4218	zinc finger protein 354C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69517926-2	chr11	69517426	69518426	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 8 of 85)	intron (NM_001081330, intron 8 of 85)	31182.0	NM_001081330	327954.0	Mm.247478	NM_177617	ENSMUSG00000005237	Dnah2	2900022L05Rik|4930564A01|D130094J20|D330014H01Rik|Dnahc2|Dnhd3	dynein, axonemal, heavy chain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-47284253-1	chr4	47283753	47284753	+	576.0	f0_c57.idr	intron (NM_009928, intron 20 of 39)	intron (NM_009928, intron 20 of 39)	-68969.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106371263-1	chr9	106370763	106371763	+	576.0	f1_c57bl6.idr	intron (NM_153459, intron 2 of 2)	intron (NM_153459, intron 2 of 2)	2631.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	8.5	25.5	9.5	11.5	17.5	20.5
Merged-chr16-93886383-1	chr16	93885883	93886883	+	576.0	f1_c57bl6.idr	intron (NM_028083, intron 3 of 13)	intron (NM_028083, intron 3 of 13)	2482.0	NM_028083	110749.0	Mm.274222	NM_028083	ENSMUSG00000022945	Chaf1b	2600017H24Rik|C76145|CAF-I p60|CAF-Ip60|CAF1|CAF1A|CAF1P60|MPHOSPH7	chromatin assembly factor 1, subunit B (p60)	protein-coding	6.0	0.0	0.0	2.0	0.0	0.5
Merged-chr12-105554213-1	chr12	105553713	105554713	+	576.0	f1_balb.idr	Intergenic	Intergenic	-8959.0	NM_009747	12062.0	Mm.390475	NM_009747	ENSMUSG00000021070	Bdkrb2	B(2)|B2|B2R|BK-2|BK2|BK2R|BKR2|BRB2	bradykinin receptor, beta 2	protein-coding	0.0	3.5	2.0	0.0	26.0	3.5
Merged-chr6-79054172-1	chr6	79053672	79054672	+	576.0	f1_balb.idr	Intergenic	Lx2|LINE|L1	22130.0	NR_040301	100504701.0	Mm.400420	NR_040301	ENSMUSG00000108072	Gm20362	-	predicted gene, 20362	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136260425-2	chr1	136259925	136260925	+	576.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001101516, exon 1 of 1)	exon (NM_001101516, exon 1 of 1)	448.0	NM_001101516	383563.0	Mm.40367	NM_001101516	ENSMUSG00000052759	Gpr25	Gm1300	G protein-coupled receptor 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-53443624-1	chr10	53443124	53444124	+	576.0	f0_balb.idr	Intergenic	Intergenic	33742.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-70475379-1	chr5	70474879	70475879	+	576.0	f1_balb.idr	Intergenic	L1_Mus4|LINE|L1	367238.0	NM_010252	14405.0	Mm.255292	NM_010252	ENSMUSG00000001260	Gabrg1	GabaA|GabaA/BZ	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 1	protein-coding	0.0	0.0	1.0	3.0	0.0	2.0
Merged-chr9-11232106-2	chr9	11231606	11232606	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	-327331.0	NM_001170787	244682.0	Mm.187021	NM_001033359	ENSMUSG00000039488	Cntn5	6720426O10Rik|A830025P08Rik|Gm507|NB-2	contactin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19187710-2	chr10	19187210	19188210	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038022, intron 1 of 1)	L2|LINE|L2	20472.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57268740-2	chr9	57268240	57269240	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6141.0	NM_028820	74211.0	Mm.428905	NM_028820	ENSMUSG00000032300	1700017B05Rik	AA682102|D9Ertd278e	RIKEN cDNA 1700017B05 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107801639-2	chr13	107801139	107802139	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	88425.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24697053-1	chr17	24696553	24697553	+	576.0	f1_balb.idr	promoter-TSS (NM_023040)	promoter-TSS (NM_023040)	819.0	NM_001357836	71893.0	Mm.390971	NM_027988	ENSMUSG00000019320	Noxo1	2310034C04Rik|P41NOX|P41NOXA|P41NOXB|P41NOXC|Snx28|hslt	NADPH oxidase organizer 1	protein-coding	3.0	14.5	12.5	2.0	15.5	6.5
Merged-chr1-63130548-1	chr1	63130048	63131048	+	576.0	f0_balb.idr	intron (NR_045914, intron 1 of 3)	B3|SINE|B2	15808.0	NR_045914	100380944.0	Mm.392955	NR_045914	ENSMUSG00000084799	Ino80dos	Gm11602	INO80 complex subunit D, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62035165-2	chr15	62034658	62035658	+	575.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2828.0	NR_132747	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8525501-2	chr12	8525001	8526001	+	575.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14065.0	NM_001038660	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4196054-2	chr12	4195554	4196554	+	575.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 6 of 21)	RMER10A|LTR|ERVL	37911.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-99324404-2	chr13	99323892	99324892	+	575.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_026873, intron 8 of 9)	intron (NM_026873, intron 8 of 9)	20286.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	22.5	50.0	60.5	39.0	58.5	52.5
Merged-chr11-69109717-2	chr11	69109203	69110203	+	575.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011065, exon 23 of 23)	3' UTR (NM_011065, exon 23 of 23)	9551.0	NM_001159367	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	4.5	3.5	2.0	3.0	1.0	2.5
Merged-chr17-31288772-3	chr17	31288237	31289237	+	575.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6746.0	NM_153062	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61770519-1	chr14	61770019	61771019	+	575.666687	f0_balb.idr	Intergenic	Intergenic	-88146.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	1.0	11.5	3.5	2.0	23.0	27.0
Merged-chr6-43475992-2	chr6	43475492	43476492	+	575.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 6 of 8)	MLT1A0|LTR|ERVL-MaLR	33563.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74639809-2	chr11	74639309	74640309	+	575.625	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001013784, exon 4 of 4)	3' UTR (NM_001013784, exon 4 of 4)	-9686.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	4.5	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34964375-3	chr8	34963895	34964895	+	575.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 1 of 26)	intron (NM_175091, intron 1 of 26)	1295.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	18.5	21.5	27.5	7.5	33.0	15.0
Merged-chr16-87709512-2	chr16	87709012	87710012	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	10558.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102579782-2	chr11	102579282	102580282	+	575.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040286)	promoter-TSS (NR_040286)	-663.0	NR_040286	100040792.0	Mm.277966	NR_040286	ENSMUSG00000078640	Gm11627	-	predicted gene 11627	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166492573-2	chr2	166492073	166493073	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45122.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6390158-2	chr19	6389658	6390658	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011224, intron 11 of 19)	intron (NM_011224, intron 11 of 19)	5750.0	NM_011224	19309.0	Mm.27806	NM_011224	ENSMUSG00000032648	Pygm	AI115133|PG	muscle glycogen phosphorylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121725670-2	chr9	121725170	121726170	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010918, intron 2 of 16)	intron (NM_010918, intron 2 of 16)	6489.0	NM_010918	18087.0	Mm.32842	NM_010918	ENSMUSG00000032525	Nktr	5330401F18Rik|D9Wsu172e	natural killer tumor recognition sequence	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-72127858-2	chr13	72127358	72128358	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-164135.0	NM_010573	16371.0	Mm.316056	NM_010573	ENSMUSG00000060969	Irx1	-	Iroquois homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46489183-2	chr19	46488683	46489683	+	575.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_015752)	TTS (NM_015752)	-12465.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-6440553-2	chr7	6440053	6441053	+	575.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_177061, exon 1 of 1)	exon (NM_177061, exon 1 of 1)	651.0	NM_177061	257882.0	Mm.479489	NM_177061	ENSMUSG00000090824	Olfr1344	4930415J05Rik|MOR124-1	olfactory receptor 1344	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158411306-2	chr2	158410806	158411806	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291137, intron 1 of 30)	intron (NM_001291137, intron 1 of 30)	1453.0	NM_001291138	228850.0	Mm.398185	NM_177227	ENSMUSG00000027652	Ralgapb	AI507211|B230339M05Rik|p170	Ral GTPase activating protein, beta subunit (non-catalytic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-131882922-2	chr3	131882422	131883422	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-202370.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	3.5	2.0	3.0	1.5	0.5	2.5
Merged-chr4-150631607-2	chr4	150631107	150632107	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355737, intron 7 of 8)	intron (NM_001355737, intron 7 of 8)	20567.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-70194559-2	chr10	70194059	70195059	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10105.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45297468-2	chr9	45296968	45297968	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21632.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101945324-2	chr5	101944824	101945824	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 10 of 66)	intron (NM_172882, intron 10 of 66)	124597.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	1.5	9.0	8.0	4.5	1.0	3.0
Merged-chr13-18797651-2	chr13	18797151	18798151	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 7 of 28)	RMER1B|Other|Other	80359.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-6186647-2	chr6	6186147	6187147	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177572, intron 2 of 17)	B1_Mus1|SINE|Alu	30526.0	NM_015829	50799.0	Mm.24513	NM_015829	ENSMUSG00000015112	Slc25a13	AI785475|Ctrn	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3588118-2	chr8	3587618	3588618	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347111, intron 1 of 18)	CpG	668.0	NM_001347111	69697.0	Mm.390010	NM_027171	ENSMUSG00000044433	Camsap3	2310057J16Rik|Kiaa1543|Nezha	calmodulin regulated spectrin-associated protein family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125578359-2	chr7	125577859	125578859	+	575.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001008700, exon 11 of 11)	3' UTR (NM_001008700, exon 11 of 11)	-25070.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	0.0	8.0	3.0	3.0	0.0	3.5
Merged-chr5-5360582-2	chr5	5360082	5361082	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	19669.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	3.0	5.0	8.5	4.5	5.5	7.0
Merged-chr16-21380506-2	chr16	21380006	21381006	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-42612.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-104592214-2	chr2	104591714	104592714	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037326, intron 1 of 1)	B1_Mur1|SINE|Alu	1730.0	NM_001037326	228410.0	Mm.259876	NM_145529	ENSMUSG00000027176	Cstf3	4732468G05Rik|C79532|CstF-77	cleavage stimulation factor, 3' pre-RNA, subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117373325-2	chr8	117372825	117373825	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	RSINE1|SINE|B4	24155.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37640541-2	chr1	37640041	37641041	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028096, intron 2 of 9)	intron (NM_028096, intron 2 of 9)	79270.0	NM_028096	72097.0	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114045868-2	chr6	114045368	114046368	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	-3788.0	NM_009723	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55399771-2	chr13	55399271	55400271	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011392, intron 1 of 12)	intron (NM_011392, intron 1 of 12)	123.0	NM_011392	20505.0	Mm.276355	NM_011392	ENSMUSG00000021490	Slc34a1	NaPi-IIa|Npt2|Npt2a|Slc17a2	solute carrier family 34 (sodium phosphate), member 1	protein-coding	2.0	0.0	3.0	0.0	0.0	2.5
Merged-chr13-95324798-2	chr13	95324298	95325298	+	575.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028106)	promoter-TSS (NM_028106)	-27.0	NM_028106	72114.0	Mm.3774	NM_028106	ENSMUSG00000041995	Zbed3	0610037K01Rik|2610005H11Rik|AU018975|AU024588	zinc finger, BED type containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-43475972-2	chr15	43475472	43476472	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_046064, intron 1 of 2)	intron (NR_046064, intron 1 of 2)	1064.0	NR_046064	100038728.0	Mm.244168	NR_046064	ENSMUSG00000072592	Gm10373	-	predicted gene 10373	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-44919653-2	chr2	44919153	44920153	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58031.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-70035653-2	chr7	70035153	70036153	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	302169.0	NR_131145	624549.0	Mm.116344	NR_131144	ENSMUSG00000109097	Gm29683	Gm44536	predicted gene, 29683	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128725934-2	chr7	128725434	128726434	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145955, intron 1 of 15)	intron (NM_145955, intron 1 of 15)	14495.0	NM_145955	210711.0	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-90468975-2	chr6	90468475	90469475	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355668, intron 2 of 2)	intron (NM_001355668, intron 2 of 2)	6399.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124931555-2	chr2	124931055	124932055	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-136572.0	NM_175034	317750.0	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20128947-2	chr13	20128447	20129447	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	38440.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.0	7.5	11.5	4.0	14.0	10.0
Merged-chr6-13605818-2	chr6	13605318	13606318	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028990, intron 1 of 4)	L2|LINE|L2	2280.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-52036147-2	chr11	52035647	52036647	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166653, intron 13 of 13)	intron (NM_001166653, intron 13 of 13)	31926.0	NM_001166653	213084.0	Mm.280557	NM_153785	ENSMUSG00000020389	Cdkl3	AI852479|B230379H01Rik	cyclin-dependent kinase-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-75241733-2	chr1	75241233	75242233	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159883, intron 8 of 8)	CT-rich|Low_complexity|Low_complexity	5031.0	NM_001159885	56812.0	Mm.489660	NM_020266	ENSMUSG00000026203	Dnajb2	2700059H22Rik|Dnajb10|Hsj1|mDj8	DnaJ heat shock protein family (Hsp40) member B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143503155-2	chr5	143502655	143503655	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 14 of 14)	intron (NM_144915, intron 14 of 14)	24838.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	0.0	0.0	1.0	0.0	0.0	2.0
Merged-chr9-94948556-2	chr9	94948056	94949056	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 8 of 15)	MTE2a|LTR|ERVL-MaLR	196727.0	NR_106116	102465763.0		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	4.5	2.5	1.5	7.0	2.5	2.0
Merged-chr5-72511366-2	chr5	72510866	72511866	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6826.0	NM_001122756	53419.0	Mm.332425	NM_016869	ENSMUSG00000005220	Corin	AV273130|Lrp4	corin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29209615-2	chr6	29209115	29210115	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302934, intron 2 of 14)	ID_B1|SINE|B4	2682.0	NM_011829	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-64569058-2	chr2	64568558	64569558	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	453708.0	NM_016719	50915.0	Mm.214554	NM_016719	ENSMUSG00000026888	Grb14	AI505286	growth factor receptor bound protein 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129822086-2	chr4	129821586	129822586	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	1378.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	1.0	4.0	7.0	9.0	7.5	4.5
Merged-chr3-142261454-2	chr3	142260954	142261954	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190854, intron 8 of 12)	(CA)n|Simple_repeat|Simple_repeat	-92029.0	NM_001277216	12167.0	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	0.0	0.0	0.5	0.0	0.0	1.0
Merged-chr17-5247769-2	chr17	5247269	5248269	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 5 of 19)	intron (NM_001085355, intron 5 of 19)	170998.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-12537973-2	chr1	12537473	12538473	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	111987.0	NR_105759	102465961.0		NR_105759	ENSMUSG00000098555	Mir6341	Gm27262|mmu-mir-6341	microRNA 6341	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-43434677-2	chr11	43434177	43435177	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198936, intron 1 of 15)	B3A|SINE|B2	946.0	NM_198936	193116.0	Mm.28200	NM_148673	ENSMUSG00000020409	Slu7	AU018913|D11Ertd730e|D3Bwg0878e	SLU7 splicing factor homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-69784523-2	chr2	69784023	69785023	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077684, intron 2 of 8)	ORR1B1|LTR|ERVL-MaLR	4963.0	NM_001077684	75051.0	Mm.195726	NM_001077684	ENSMUSG00000070883	Ccdc173	4930525K21Rik|4930578N16Rik	coiled-coil domain containing 173	protein-coding	0.0	0.5	0.0	0.0	0.5	0.0
Merged-chr12-35212875-1	chr12	35212375	35213375	+	575.5	f0_balb.idr	Intergenic	Intergenic	-17978.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	9.0	22.5	8.5	4.5	12.5	8.5
Merged-chr13-113437053-2	chr13	113436553	113437553	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65791.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34644195-2	chr17	34643695	34644695	+	575.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019873)	promoter-TSS (NM_019873)	-688.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-114934897-2	chr4	114934397	114935397	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER63B|DNA|hAT-Blackjack	-8884.0	NM_015758	30923.0	Mm.377122	NM_015758	ENSMUSG00000044518	Foxe3	FREAC8|dyl|rct	forkhead box E3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-52181814-2	chr16	52181314	52182314	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 13 of 17)	intron (NM_001033238, intron 13 of 17)	150265.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50445847-2	chr16	50445347	50446347	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13381.0	NM_001347240	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-13341439-2	chr11	13340939	13341939	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur1|LINE|L1	837602.0	NR_131011	75280.0	Mm.108492	NR_131011	ENSMUSG00000085452	4930554G24Rik	-	RIKEN cDNA 4930554G24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51127872-2	chr14	51127372	51128372	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360117, intron 1 of 2)	RMER1B|Other|Other	-1165.0	NM_030098	78416.0	Mm.103835	NM_030098	ENSMUSG00000021880	Rnase6	9530043P15Rik|BB119466	ribonuclease, RNase A family, 6	protein-coding	2.0	3.0	2.0	0.0	0.0	3.0
Merged-chr3-11213295-2	chr3	11212795	11213795	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	631064.0	NR_040751	100038545.0	Mm.388494	NR_040751	ENSMUSG00000104015	Gm10745	-	predicted gene 10745	ncRNA	0.0	0.0	3.5	1.0	0.0	9.0
Merged-chr4-55824973-2	chr4	55824473	55825473	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-292498.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-91094384-2	chr13	91093884	91094884	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025770, intron 3 of 7)	intron (NM_025770, intron 3 of 7)	129603.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124368351-2	chr8	124367814	124368814	+	575.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_171824)	TTS (NM_171824)	65622.0	NM_171824	209966.0	Mm.234233	NM_171824	ENSMUSG00000050751	Pgbd5	2900019M05Rik|AI854313	piggyBac transposable element derived 5	protein-coding	10.0	0.0	0.5	10.0	1.5	0.0
Merged-chr2-32909446-2	chr2	32908946	32909946	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146119, intron 2 of 13)	intron (NM_146119, intron 2 of 13)	33312.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-158039710-2	chr3	158039210	158040210	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289525, intron 1 of 12)	intron (NM_001289525, intron 1 of 12)	3028.0	NM_001289524	67144.0	Mm.358704	NM_024194	ENSMUSG00000063052	Lrrc40	2610040E16Rik|AI837674	leucine rich repeat containing 40	protein-coding	0.0	5.0	0.0	0.0	0.0	0.0
Merged-chr15-6385109-2	chr15	6384609	6385609	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	-1639.0	NM_023118	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-110340496-2	chr8	110339996	110340996	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172916, intron 8 of 86)	intron (NM_172916, intron 8 of 86)	73519.0	NM_172916	244653.0	Mm.444803	NM_172916	ENSMUSG00000059854	Hydin	1700034M11Rik|4930545D19Rik|4932703P14|672398|A830061H17|AC069308.21gm4|Gm9558|hy-3|hy3|hyrh	HYDIN, axonemal central pair apparatus protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-73711435-2	chr6	73710935	73711935	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-240414.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	0.0	0.0	1.5	2.0	0.0	1.5
Merged-chr2-90462877-2	chr2	90462377	90463377	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 7 of 23)	RSINE1|SINE|B4	16297.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-103240241-2	chr9	103239741	103240741	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-9955.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29803273-2	chr6	29802773	29803773	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	intron (NM_001171000, intron 1 of 16)	34830.0	NM_001171000	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84596566-2	chr2	84596066	84597066	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52914.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84205713-2	chr8	84205237	84206237	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-2781.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	31.5	54.0	44.5	42.0	67.5	27.0
Merged-chr5-140395666-2	chr5	140395166	140396166	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-6358.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128121259-2	chr10	128120759	128121759	+	575.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_054078, exon 16 of 30)	exon (NM_054078, exon 16 of 30)	28476.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147482857-2	chr4	147482357	147483357	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	-70420.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141268588-2	chr4	141268088	141269088	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-9851.0	NR_151527	100503810.0		NR_151527	ENSMUSG00000085395	Gm13056	-	predicted gene 13056	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120100117-2	chr6	120099617	120100617	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	6737.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32939553-2	chr2	32939053	32940053	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199302, intron 16 of 24)	B3|SINE|B2	21702.0	NM_199302	227738.0	Mm.248037	NM_199302	ENSMUSG00000026792	Lrsam1	-	leucine rich repeat and sterile alpha motif containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103700542-2	chr11	103700042	103701042	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_102389, intron 1 of 2)	intron (NR_102389, intron 1 of 2)	2818.0	NR_102396	399609.0	Mm.351922	NR_102388		C130046K22Rik	-	RIKEN cDNA C130046K22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46885581-2	chr8	46885081	46886081	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101306.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150629535-2	chr2	150629035	150630035	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080575, intron 6 of 13)	intron (NM_080575, intron 6 of 13)	-20968.0	NM_001356492	71881.0	Mm.26599	NM_027977	ENSMUSG00000033096	Apmap	2310001A20Rik|AI314817	adipocyte plasma membrane associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120444448-2	chr11	120443948	120444948	+	575.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_145363, exon 2 of 3)	exon (NM_145363, exon 2 of 3)	1817.0	NM_145363	208634.0	Mm.209875	NM_145363	ENSMUSG00000039691	Tspan10	Ocsp	tetraspanin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89913819-2	chr3	89913319	89914319	+	575.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310676)	promoter-TSS (NM_001310676)	-623.0	NM_010559	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	4.5	55.5	32.5	22.0	36.5	33.0
Merged-chr5-120586808-3	chr5	120586325	120587325	+	575.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145853, intron 1 of 27)	intron (NM_145853, intron 1 of 27)	1788.0	NM_145853	252972.0	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-26585571-1	chr11	26585071	26586071	+	575.333313	f0_balb.idr	intron (NM_027260, intron 2 of 12)	intron (NM_027260, intron 2 of 12)	8349.0	NM_027260	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	14.5	49.5	55.5	41.5	44.0	47.5
Merged-chr15-85151556-3	chr15	85151057	85152057	+	575.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040360, intron 2 of 2)	intron (NR_040360, intron 2 of 2)	4575.0	NR_040360	100502602.0	Mm.390830	NR_040360	ENSMUSG00000115924	Gm19277	-	predicted gene, 19277	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103899311-3	chr14	103898818	103899818	+	575.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54842.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53474771-3	chr15	53474258	53475258	+	575.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	-128575.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124060381-2	chr5	124059859	124060859	+	575.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-28099.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182564593-2	chr1	182564093	182565093	+	575.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145806)	promoter-TSS (NM_001145806)	-414.0	NM_001145806	170725.0	Mm.189201	NM_130890	ENSMUSG00000038599	Capn8	nCL-2|nCL-2'	calpain 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61083866-2	chr18	61083366	61084366	+	575.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001146268, exon 23 of 23)	3' UTR (NM_001146268, exon 23 of 23)	-21706.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121266758-2	chr10	121266258	121267258	+	575.25	f0_balb.idr|f1_balb.idr	3' UTR (NM_029057, exon 12 of 12)	3' UTR (NM_029057, exon 12 of 12)	44638.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22675235-2	chr11	22674735	22675735	+	575.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	162952.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23766967-2	chr11	23766467	23767467	+	575.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009044, intron 1 of 9)	intron (NM_009044, intron 1 of 9)	4003.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-15064993-2	chr18	15064493	15065493	+	575.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_134112, intron 1 of 4)	intron (NM_134112, intron 1 of 4)	-1411.0	NM_001142731	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-83384193-3	chr4	83383657	83384657	+	575.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045450, intron 2 of 2)	intron (NR_045450, intron 2 of 2)	6511.0	NR_045450	790913.0	Mm.406752	NR_045450	ENSMUSG00000086321	Gm11413	-	predicted gene 11413	ncRNA	1.5	1.0	2.0	4.0	1.0	5.0
Merged-chr1-189887687-1	chr1	189887187	189888187	+	575.0	f0_balb.idr	intron (NM_026796, intron 7 of 11)	intron (NM_026796, intron 7 of 11)	34604.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55460160-3	chr11	55459545	55460545	+	575.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 1 of 3)	intron (NM_009720, intron 1 of 3)	1163.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16900824-2	chr7	16900324	16901324	+	575.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5666.0	NM_008967	19222.0	Mm.287572	NM_008967	ENSMUSG00000043017	Ptgir	IP|PGI2	prostaglandin I receptor (IP)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51101627-2	chr14	51101126	51102126	+	575.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007447, exon 2 of 2)	exon (NM_007447, exon 2 of 2)	5626.0	NM_201239	58809.0	Mm.202665	NM_021472	ENSMUSG00000021876	Rnase4	C730049F20Rik|Rab1	ribonuclease, RNase A family 4	protein-coding	10.0	0.0	2.5	0.0	5.0	8.0
Merged-chr4-129064707-1	chr4	129064207	129065207	+	575.0	f0_c57.idr	intron (NM_029219, intron 1 of 8)	B1F|SINE|Alu	6436.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101841320-2	chr5	101840820	101841820	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 66 of 66)	L1M2|LINE|L1	76190.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.0	0.5	2.0	2.0	1.0	5.0
Merged-chr7-102000312-2	chr7	101999812	102000812	+	575.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133947, exon 14 of 25)	exon (NM_133947, exon 14 of 25)	17843.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0.0	1.0	0.5	0.0	1.0	0.5
Merged-chr19-3895292-1	chr19	3894792	3895792	+	575.0	f1_c57bl6.idr	TTS (NM_013490)	TTS (NM_013490)	9938.0	NM_016921	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-54802407-2	chr1	54801907	54802907	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 2 of 27)	intron (NM_001081433, intron 2 of 27)	123980.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	13.0	8.0	4.0	3.0	8.0	2.5
Merged-chr11-97312802-1	chr11	97312302	97313302	+	575.0	f1_balb.idr	Intergenic	Intergenic	-2914.0	NM_025927	67036.0	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	0.0	0.0	5.0	0.0	3.0	5.5
Merged-chr13-35940643-1	chr13	35940143	35941143	+	575.0	f0_balb.idr	Intergenic	Intergenic	-27263.0	NM_029628	76487.0	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	7.5	5.0	6.5	4.0	19.0	9.0
Merged-chr8-122277957-2	chr8	122277466	122278466	+	575.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4175.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	3.0	0.0	0.0	3.0	5.5	1.5
Merged-chr11-116602169-2	chr11	116601669	116602669	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167680, intron 10 of 18)	intron (NM_001167680, intron 10 of 18)	8482.0	NM_009591	11298.0	Mm.42233	NM_009591	ENSMUSG00000020804	Aanat	AA-NAT|Nat-2|Nat4|Snat	arylalkylamine N-acetyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25682075-2	chr7	25681575	25682575	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172148, intron 1 of 2)	L2a|LINE|L2	917.0	NM_172148	232987.0	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-57695907-1	chr3	57695407	57696407	+	575.0	f0_balb.idr	Intergenic	MT2B|LTR|ERVL	-3370.0	NM_001033349	242037.0	Mm.291091	NM_001033349	ENSMUSG00000074591	Ankub1	Gm410	ankrin repeat and ubiquitin domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13378050-2	chr16	13377550	13378550	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153588, intron 1 of 14)	B1F|SINE|Alu	19629.0	NM_153588	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129623028-2	chr2	129622528	129623528	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355158, intron 7 of 8)	intron (NM_001355158, intron 7 of 8)	27566.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	4.0	1.5	3.0	0.0	3.5	1.0
Merged-chr17-45583786-1	chr17	45583286	45584286	+	575.0	f0_c57.idr	Intergenic	B3|SINE|B2	8607.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	17.0	60.5	42.5	15.5	60.5	39.5
Merged-chr19-4234159-2	chr19	4233659	4234659	+	575.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027196)	TTS (NM_027196)	1744.0	NR_132280	69745.0	Mm.32518	NM_027196	ENSMUSG00000024854	Pold4	2410012M21Rik|AI463381|AW060307|Polds|p12	polymerase (DNA-directed), delta 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-48540648-1	chr13	48540148	48541148	+	575.0	f0_balb.idr	Intergenic	Intergenic	-2376.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-97821882-2	chr4	97821382	97822382	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	44256.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96397178-2	chr9	96396678	96397678	+	575.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32747.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	7.5	21.5	34.0	18.0	16.0	15.0
Merged-chr1-131438351-1	chr1	131437851	131438851	+	575.0	f0_balb.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	89010.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	2.0	16.0	10.5	15.0	3.0	7.0
Merged-chr13-71993942-1	chr13	71993442	71994442	+	575.0	f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-30219.0	NM_010573	16371.0	Mm.316056	NM_010573	ENSMUSG00000060969	Irx1	-	Iroquois homeobox 1	protein-coding	2.0	1.5	2.0	2.0	1.5	0.0
Merged-chr6-83003889-1	chr6	83003389	83004389	+	575.0	f1_balb.idr	exon (NM_033079, exon 5 of 10)	exon (NM_033079, exon 5 of 10)	29582.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	63.5	102.5	26.5	19.0	46.5	44.5
Merged-chr19-21780177-1	chr19	21779677	21780677	+	575.0	f1_c57bl6.idr	5' UTR (NM_031997, exon 2 of 25)	5' UTR (NM_031997, exon 2 of 25)	1837.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62971464-2	chr9	62970964	62971964	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 1 of 13)	PB1D10|SINE|Alu	9415.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184719849-2	chr1	184719349	184720349	+	575.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_040627)	TTS (NR_040627)	7352.0	NR_040627	74971.0	Mm.410816	NR_040627	ENSMUSG00000092578	4930488B22Rik	-	RIKEN cDNA 4930488B22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18589900-2	chr16	18589400	18590400	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285472, intron 1 of 8)	intron (NM_001285472, intron 1 of 8)	771.0	NM_001285472	21380.0	Mm.295194	NM_011532	ENSMUSG00000009097	Tbx1	-	T-box 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83307083-2	chr11	83306583	83307583	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027915, intron 1 of 20)	B3A|SINE|B2	4386.0	NM_001035854	71770.0	Mm.39053	NM_027915	ENSMUSG00000035152	Ap2b1	1300012O03Rik|AI788979|AP105B	adaptor-related protein complex 2, beta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113305825-2	chr6	113305325	113306325	+	575.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_170673)	TTS (NM_170673)	-1312.0	NM_030178	78783.0	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47173683-2	chr6	47173183	47174183	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004357, intron 20 of 23)	intron (NM_001004357, intron 20 of 23)	-70713.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.0	0.0	0.0	1.5	1.0	1.0
Merged-chr3-122296989-2	chr3	122296489	122297489	+	575.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-3286.0	NR_030439	791077.0		NR_030439	ENSMUSG00000076456	Mir760	Mirn760|mir-760|mmu-mir-760	microRNA 760	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136790973-2	chr5	136790473	136791473	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024474, intron 3 of 12)	intron (NM_024474, intron 3 of 12)	92242.0	NM_001346699	140709.0	Mm.295020	NM_024474	ENSMUSG00000004415	Col26a1	9430032K24Rik|BC002218|Col26a|Emid2|Emu2	collagen, type XXVI, alpha 1	protein-coding	0.0	0.0	0.5	0.0	0.0	2.5
Merged-chr9-35026984-1	chr9	35026484	35027484	+	575.0	f0_balb.idr	intron (NM_001190912, intron 12 of 15)	intron (NM_001190912, intron 12 of 15)	-89744.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	2.0	4.5	9.5	0.0	0.0	8.5
Merged-chr9-13752711-2	chr9	13752211	13753211	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_024025, intron 1 of 15)	intron (NR_024025, intron 1 of 15)	3530.0	NM_023858	77116.0	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82015903-2	chr11	82015403	82016403	+	575.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19674.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71294853-1	chr8	71294353	71295353	+	575.0	f1_balb.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	22139.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	48.5	160.5	91.0	62.0	147.5	122.0
Merged-chr8-83993221-1	chr8	83992721	83993721	+	575.0	f1_c57bl6.idr	intron (NM_008854, intron 8 of 9)	PB1D10|SINE|Alu	-4451.0	NM_001081415	666704.0	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	3.5	4.0	6.0	2.0	1.5	1.5
Merged-chr6-88523741-2	chr6	88523241	88524241	+	575.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4941.0	NM_016906	53421.0	Mm.28375	NM_016906	ENSMUSG00000030082	Sec61a1	AA408394|AA410007|Sec61a	Sec61 alpha 1 subunit (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-29452776-1	chr16	29452276	29453276	+	575.0	f1_c57bl6.idr	intron (NM_001164613, intron 13 of 21)	intron (NM_001164613, intron 13 of 21)	-74044.0	NM_175650	268878.0	Mm.9823	NM_175650	ENSMUSG00000048939	Atp13a5	C630015F21Rik	ATPase type 13A5	protein-coding	12.5	0.0	6.5	12.5	0.0	3.5
Merged-chr11-68897758-1	chr11	68897258	68898258	+	575.0	f1_c57bl6.idr	Intergenic	Intergenic	-3808.0	NM_009080	19941.0	Mm.3229	NM_009080	ENSMUSG00000060938	Rpl26	SIG-20	ribosomal protein L26	protein-coding	6.0	1.0	7.5	3.0	2.5	9.5
Merged-chr1-172356828-1	chr1	172356328	172357328	+	575.0	f1_c57bl6.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	15618.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	2.0	9.0	5.5	13.5	3.5	11.5
Merged-chr9-103109226-1	chr9	103108726	103109726	+	575.0	f0_c57.idr	Intergenic	Intergenic	-2848.0	NM_173781	270192.0	Mm.490252	NM_173781	ENSMUSG00000032549	Rab6b	9630015C03|AI844641|C330006L04Rik|D9Bwg0185e	RAB6B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-66925787-2	chr10	66925287	66926287	+	575.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5403.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110996394-1	chr11	110995894	110996894	+	575.0	f1_c57bl6.idr	intron (NM_001252207, intron 2 of 2)	L2|LINE|L2	-1093.0	NM_001252209	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	17.5	55.5	39.0	34.5	62.5	56.0
Merged-chr11-105180840-1	chr11	105180340	105181340	+	575.0	f0_balb.idr	promoter-TSS (NM_001294334)	promoter-TSS (NM_001294334)	593.0	NR_027956	73431.0	Mm.351426	NM_028539		1700052K11Rik	AI840954	RIKEN cDNA 1700052K11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-76189978-1	chr5	76189478	76190478	+	575.0	f0_balb.idr	intron (NM_011626, intron 1 of 5)	intron (NM_011626, intron 1 of 5)	6098.0	NM_011626	21982.0	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60837489-2	chr11	60836989	60837989	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172112, intron 1 of 6)	intron (NM_001172112, intron 1 of 6)	6858.0	NM_145428	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49064919-1	chr7	49064419	49065419	+	575.0	f0_balb.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	97239.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-66084637-1	chr17	66084137	66085137	+	575.0	f1_c57bl6.idr	intron (NM_028388, intron 5 of 7)	B3|SINE|B2	-7591.0	NM_001025572	106585.0	Mm.34706	NM_001025572	ENSMUSG00000034647	Ankrd12	2900001A12Rik|AI447928|ANCO-2|AV347965|GAC-1|mKIAA0874	ankyrin repeat domain 12	protein-coding	0.0	0.0	3.0	1.0	0.0	0.0
Merged-chr9-117712863-2	chr9	117712363	117713363	+	575.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTCC)n|Simple_repeat|Simple_repeat	-82950.0	NM_001172121	207181.0	Mm.326411	NM_178660	ENSMUSG00000039607	Rbms3	6720477E09Rik|8430436O14Rik	RNA binding motif, single stranded interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116080011-2	chr11	116079511	116080511	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361446, intron 5 of 6)	intron (NM_001361446, intron 5 of 6)	-2050.0	NM_001009573	70450.0	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-153443229-1	chr1	153442729	153443729	+	575.0	f0_balb.idr	intron (NM_001033162, intron 6 of 9)	RLTR40|LTR|ERVK	18020.0	NM_001033162	71836.0	Mm.49460	NM_001033162	ENSMUSG00000042708	Shcbp1l	1700012A16Rik	Shc SH2-domain binding protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78625663-1	chr15	78625163	78626163	+	575.0	f1_c57bl6.idr	Intergenic	Intergenic	28616.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0.0	0.0	2.5	0.0	0.0	2.0
Merged-chr2-6724516-2	chr2	6724016	6725016	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 3 of 15)	B1_Mur2|SINE|Alu	-2854.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-43792626-2	chr13	43792126	43793126	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009856, intron 2 of 4)	B4A|SINE|B4	7514.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-14540406-1	chr5	14539906	14540906	+	575.0	f1_balb.idr	exon (NM_011995, exon 3 of 25)	exon (NM_011995, exon 3 of 25)	25488.0	NM_001110796	26875.0	Mm.146275	NM_011995	ENSMUSG00000061601	Pclo	Acz|Pico	piccolo (presynaptic cytomatrix protein)	protein-coding	0.0	2.0	0.0	0.0	0.5	0.0
Merged-chr7-67262137-2	chr7	67261637	67262637	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 7 of 11)	B3|SINE|B2	39521.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120698755-1	chr10	120698255	120699255	+	575.0	f0_balb.idr	Intergenic	Intergenic	-66977.0	NR_038000	70874.0	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	2.5	3.0	8.0	2.0	1.0	7.0
Merged-chr1-47813071-2	chr1	47812571	47813571	+	575.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19A|LTR|ERVK	-345946.0	NR_105768	102466969.0		NR_105768	ENSMUSG00000098876	Mir6350	Gm27958|mmu-mir-6350	microRNA 6350	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75377634-1	chr18	75377134	75378134	+	575.0	f0_balb.idr	intron (NM_001042660, intron 3 of 3)	intron (NM_001042660, intron 3 of 3)	10269.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-143661017-1	chr6	143660517	143661517	+	575.0	f0_balb.idr	Intergenic	RMER19C|LTR|ERVK	-9729.0	NR_045732	73425.0	Mm.417844	NR_045732	ENSMUSG00000086887	1700060C16Rik	-	RIKEN cDNA 1700060C16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-23512373-2	chr7	23511873	23512873	+	575.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6784.0	NM_001101562	622032.0	Mm.474428	NM_001101562	ENSMUSG00000090715	Vmn1r167	EG622032|Gm6279	vomeronasal 1 receptor 167	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24500136-1	chr17	24499636	24500636	+	575.0	f1_balb.idr	intron (NM_001360469, intron 10 of 17)	B1_Mus1|SINE|Alu	11353.0	NM_027937	268932.0	Mm.70989	NM_027937	ENSMUSG00000033597	Caskin1	3300002N10Rik|C130061I24|C630036E02Rik|mKIAA1306	CASK interacting protein 1	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr11-55007701-2	chr11	55007201	55008201	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 7 of 24)	intron (NR_138556, intron 7 of 24)	25770.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102268555-2	chr7	102268055	102269055	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009287, intron 1 of 11)	intron (NM_009287, intron 1 of 11)	731.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-8856674-2	chr5	8856174	8857174	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011075, intron 25 of 27)	intron (NM_011075, intron 25 of 27)	-37047.0	NM_008830	18670.0	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-75574990-2	chr5	75574490	75575490	+	575.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122733)	promoter-TSS (NM_001122733)	-1.0	NM_021099	16590.0	Mm.247073	NM_021099	ENSMUSG00000005672	Kit	Bs|CD117|Fdc|Gsfsco1|Gsfsco5|Gsfsow3|SCO1|SCO5|SOW3|Ssm|Tr-kit|W|c-KIT	KIT proto-oncogene receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr5-117515967-2	chr5	117515467	117516467	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 3 of 19)	MTC|LTR|ERVL-MaLR	101965.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0.0	3.0	2.0	0.0	0.5	0.0
Merged-chr17-29387887-2	chr17	29387387	29388387	+	575.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	26973.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0.0	5.0	1.0	4.0	1.0	0.0
Merged-chr14-21824086-1	chr14	21823586	21824586	+	575.0	f1_balb.idr	Intergenic	RMER20B|LTR|ERVK	-7475.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	2.5	9.5	6.5	1.5	11.5	1.5
Merged-chr11-44356014-1	chr11	44355514	44356514	+	575.0	f1_c57bl6.idr	Intergenic	Intergenic	-44049.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	0.5	0.0	1.0	0.0	0.0	0.0
Merged-chr1-79859837-2	chr1	79859337	79860337	+	575.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-1172.0	NM_009255	20720.0	Mm.3093	NM_009255	ENSMUSG00000026249	Serpine2	B230326M24Rik|PAI-1|PI-7|PI7|PN-1|Spi4	serine (or cysteine) peptidase inhibitor, clade E, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91819775-2	chr16	91819275	91820275	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 12 of 15)	MTB_Mm|LTR|ERVL-MaLR	90404.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113981142-1	chr6	113980642	113981642	+	575.0	f0_balb.idr	intron (NM_009723, intron 1 of 21)	RSINE1|SINE|B4	-46461.0	NM_001347365	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-6148756-2	chr7	6148256	6149256	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013012, intron 1 of 2)	intron (NM_001013012, intron 1 of 2)	7215.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-143920227-2	chr1	143919727	143920727	+	575.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83922.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-74258869-2	chr13	74258369	74259369	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317351, intron 2 of 9)	intron (NM_001317351, intron 2 of 9)	33462.0	NM_009644	11624.0	Mm.290446	NM_009644	ENSMUSG00000021575	Ahrr	mKIAA1234	aryl-hydrocarbon receptor repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87355819-1	chr3	87355319	87356319	+	575.0	f1_c57bl6.idr	Intergenic	Intergenic	-2062.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	34.0	54.5	35.5	21.5	20.0	48.0
Merged-chr13-112324157-2	chr13	112323657	112324657	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168403, intron 4 of 11)	intron (NM_001168403, intron 4 of 11)	35639.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	12.0	0.0	5.0	11.0	3.0	8.5
Merged-chr6-129718785-1	chr6	129718285	129719285	+	575.0	f1_balb.idr	Intergenic	Lx4B|LINE|L1	-1653.0	NM_001012520	503550.0	Mm.376476	NM_001012520	ENSMUSG00000067610	Klri1	-	killer cell lectin-like receptor family I member 1	protein-coding	8.0	0.0	0.0	4.0	0.0	1.5
Merged-chr6-27207009-1	chr6	27206509	27207509	+	575.0	f1_balb.idr	Intergenic	(TTTG)n|Simple_repeat|Simple_repeat	729741.0	NR_030420	735266.0		NR_030420	ENSMUSG00000076067	Mir592	Mirn592|mir-592|mmu-mir-592	microRNA 592	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9340258-2	chr3	9339758	9340758	+	575.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-62820.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	2.5
Merged-chr7-25764779-2	chr7	25764279	25765279	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 14 of 19)	intron (NM_009465, intron 14 of 19)	-10020.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88485745-2	chr15	88485245	88486245	+	575.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114557.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120508287-1	chr5	120507787	120508787	+	575.0	f1_balb.idr	Intergenic	MT2B2|LTR|ERVL	-2905.0	NM_001177595	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr11-116447082-2	chr11	116446580	116447580	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033267, intron 5 of 13)	intron (NM_001033267, intron 5 of 13)	7267.0	NM_001033267	217341.0	Mm.387352	NM_001033267	ENSMUSG00000070331	Qrich2	Gm66	glutamine rich 2	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr9-4671949-2	chr9	4671449	4672449	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113181, intron 3 of 10)	Lx2|LINE|L1	124285.0	NM_001113180	14802.0	Mm.209263	NM_019691	ENSMUSG00000025892	Gria4	GluA4|GluR-D|Glur-4|Glur4|Gluralpha4|spkw1	glutamate receptor, ionotropic, AMPA4 (alpha 4)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80382969-1	chr11	80382469	80383469	+	575.0	f0_balb.idr	promoter-TSS (NM_011751)	promoter-TSS (NM_011751)	-310.0	NM_001130169	22680.0	Mm.401332	NM_011751	ENSMUSG00000017421	Zfp207	8430401D15Rik|BuGZ|Zep|Znf207	zinc finger protein 207	protein-coding	10.5	23.0	7.5	12.5	22.0	7.5
Merged-chr6-122656973-1	chr6	122656473	122657473	+	575.0	f1_balb.idr	Intergenic	RLTR22_Mur|LTR|ERVK	30549.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40341572-2	chr12	40341072	40342072	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178845, intron 4 of 11)	intron (NM_178845, intron 4 of 11)	104218.0	NM_172575	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5392226-2	chr2	5391726	5392726	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030601, intron 1 of 1)	ID_B1|SINE|B4	12836.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143504634-2	chr5	143504134	143505134	+	575.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009007)	TTS (NM_009007)	23359.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	2.5	0.0	3.5	1.5	0.0	4.0
Merged-chr11-70604102-2	chr11	70603602	70604602	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 10 of 30)	intron (NM_016713, intron 10 of 30)	-11792.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-52422882-1	chr12	52422382	52423382	+	575.0	f0_balb.idr	Intergenic	Intergenic	57727.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77775120-1	chr18	77774620	77775620	+	575.0	f0_c57.idr	intron (NM_007505, intron 1 of 11)	intron (NM_007505, intron 1 of 11)	-1235.0	NM_001357531	225745.0	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-20294686-2	chr3	20294186	20295186	+	575.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18953.0	NM_029706	76703.0	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111597736-2	chr9	111597236	111598236	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016853, intron 6 of 10)	intron (NM_016853, intron 6 of 10)	92612.0	NM_016853	20840.0	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120845224-1	chr4	120844724	120845724	+	575.0	f0_c57.idr	Intergenic	Intergenic	-9575.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	0.5	0.0	2.0	0.0	0.0	0.5
Merged-chr9-61382962-2	chr9	61382462	61383462	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083928, intron 4 of 19)	intron (NM_001083928, intron 4 of 19)	10596.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-84986731-1	chr13	84986231	84987231	+	575.0	f1_balb.idr	Intergenic	L1Md_F2|LINE|L1	-202654.0	NM_001347587	66671.0	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	1.5	5.0	2.5	5.5	0.0	3.0
Merged-chr2-37451475-2	chr2	37450975	37451975	+	575.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033960)	promoter-TSS (NM_001033960)	-779.0	NM_001033960	227800.0	Mm.383192	NM_146121	ENSMUSG00000035437	Rabgap1	Gapcena|mKIAA4104	RAB GTPase activating protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135628993-2	chr3	135628503	135629503	+	575.0	f0_balb.idr|f1_balb.idr	intron (NM_008689, intron 6 of 24)	intron (NM_008689, intron 6 of 24)	62544.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	1.5	30.0	21.5	14.5	26.5	21.0
Merged-chr18-69084307-1	chr18	69083807	69084807	+	575.0	f0_balb.idr	Intergenic	Intergenic	-62034.0	NR_105780	102465187.0		NR_105780	ENSMUSG00000098366	Mir145b	Gm27644|mmu-mir-145b	microRNA 145b	ncRNA	2.5	8.5	0.0	2.5	4.5	3.0
Merged-chr15-98847160-2	chr15	98846660	98847660	+	575.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033276, exon 37 of 55)	exon (NM_001033276, exon 37 of 55)	-15652.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59858228-2	chr10	59857728	59858728	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359267, intron 10 of 11)	MTE2b|LTR|ERVL-MaLR	-21363.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107901581-2	chr9	107901084	107902084	+	575.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028369, exon 4 of 6)	exon (NM_028369, exon 4 of 6)	-5305.0	NR_109782	19882.0	Mm.3901	NM_009074	ENSMUSG00000032584	Mst1r	CD136|CDw136|Fv-2|Fv2|PTK8|Ron|STK	macrophage stimulating 1 receptor (c-met-related tyrosine kinase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51361233-2	chr3	51360733	51361733	+	575.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20589.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-53817825-2	chr1	53817325	53818325	+	574.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 28 of 28)	intron (NM_001001883, intron 28 of 28)	-31599.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90744715-3	chr16	90744162	90745162	+	574.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029844, intron 1 of 2)	intron (NM_029844, intron 1 of 2)	6338.0	NM_029844	77037.0	Mm.22455	NM_029844	ENSMUSG00000039956	Mrap	1110025G12Rik|C21ORF61|Falp|ORF61	melanocortin 2 receptor accessory protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-109033737-2	chr12	109033237	109034237	+	574.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163175, exon 7 of 7)	exon (NM_001163175, exon 7 of 7)	34480.0	NM_001163175	380785.0	Mm.342085	NM_001163175	ENSMUSG00000040867	Begain	BM948371|Gm897	brain-enriched guanylate kinase-associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34249267-2	chr5	34248767	34249767	+	574.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 1 of 12)	intron (NM_001015039, intron 1 of 12)	39057.0	NM_001015039	231125.0	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139470034-2	chr5	139469509	139470509	+	574.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9475.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51737146-3	chr13	51736643	51737643	+	574.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281880, intron 2 of 16)	MIRb|SINE|MIR	56604.0	NM_001281880	20354.0	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123803788-3	chr8	123803282	123804282	+	574.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-2214.0	NM_009003	19341.0	Mm.9221	NM_009003	ENSMUSG00000019478	Rab4a	AI848268|Rab4	RAB4A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-31899220-3	chr11	31898735	31899735	+	574.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290678, intron 2 of 7)	intron (NM_001290678, intron 2 of 7)	28295.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	2.5	7.0	4.0	4.5	14.5	10.0
Merged-chr7-80454227-1	chr7	80453727	80454727	+	574.666687	f1_balb.idr	TTS (NM_007550)	TTS (NM_007550)	-48791.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	3.0	0.5	3.0	0.0	8.0	2.0
Merged-chr6-114848384-2	chr6	114847884	114848884	+	574.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	73437.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92679498-2	chr5	92678998	92679998	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3937.0	NM_015756	27428.0	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120478785-2	chr5	120478285	120479285	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145565, intron 1 of 7)	intron (NM_145565, intron 1 of 7)	2238.0	NM_145565	231691.0	Mm.28685	NM_145565	ENSMUSG00000029597	Sds	4432411H13Rik|SDH	serine dehydratase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29334608-2	chr19	29334108	29335108	+	574.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011272)	promoter-TSS (NM_011272)	62.0	NM_011272	19773.0	Mm.5033	NM_011272	ENSMUSG00000039097	Rln1	Rln|rlx	relaxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-33856060-2	chr7	33855560	33856560	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	88925.0	NM_178308	110187.0	Mm.155750	NM_178308	ENSMUSG00000066586	Scgb2b26	Abpbg26|Abpbg4|Abpg|C2d|Scgb2b4	secretoglobin, family 2B, member 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5502516-2	chr2	5502016	5503016	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290375, intron 2 of 10)	(TG)n|Simple_repeat|Simple_repeat	123126.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-35592394-2	chr5	35591894	35592894	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030721, intron 7 of 18)	intron (NM_030721, intron 7 of 18)	-3631.0	NR_045807	74364.0	Mm.473123	NM_175208	ENSMUSG00000055061	4931431C16Rik	-	RIKEN cDNA 4931431C16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130270465-2	chr2	130269965	130270965	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3947.0	NM_024193	67134.0	Mm.29363	NM_024193	ENSMUSG00000027405	Nop56	2310044F10Rik|Nol5a	NOP56 ribonucleoprotein	protein-coding	2.0	1.0	0.0	2.0	0.0	1.0
Merged-chr7-27177761-2	chr7	27177261	27178261	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029391, intron 1 of 7)	B2_Mm2|SINE|B2	1122.0	NM_029391	19342.0	Mm.482114	NM_029391	ENSMUSG00000053291	Rab4b	1500031G17Rik	RAB4B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115678598-2	chr11	115678098	115679098	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	RMER6A|LTR|ERVK	20936.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4244707-2	chr18	4244207	4245207	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	78875.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52037462-2	chr13	52036962	52037962	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59279.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72366599-2	chr6	72366099	72367099	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331167, intron 1 of 5)	MTD|LTR|ERVL-MaLR	373.0	NM_001331167	66510.0	Mm.170023	NM_025607	ENSMUSG00000055850	Rnf181	1700047F16Rik|2500002L14Rik|6230415N01Rik|C77350	ring finger protein 181	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45751624-2	chr17	45751144	45752144	+	574.5	f0_balb.idr|f1_balb.idr	intron (NR_152153, intron 2 of 4)	B2_Mm2|SINE|B2	17138.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	0.0	2.0	0.0	0.0	8.5	6.5
Merged-chr10-81179467-2	chr10	81178967	81179967	+	574.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_028549)	TTS (NR_028549)	506.0	NR_028549	100217454.0		NR_028549	ENSMUSG00000064441	Snord37	MBII-376	small nucleolar RNA, C/D box 37	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74276904-2	chr1	74276404	74277404	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1696.0	NM_174985	227289.0	Mm.246587	NM_174985	ENSMUSG00000064272	Gpbar1	BG37|GPCR|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-66324611-2	chr16	66324111	66325111	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-332507.0	NR_040512	75501.0	Mm.394300	NR_040512	ENSMUSG00000092599	1700010K23Rik	-	RIKEN cDNA 1700010K23 gene	ncRNA	0.0	0.0	2.0	1.0	0.0	0.0
Merged-chr11-50023080-2	chr11	50022580	50023580	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2251.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-44968396-2	chr4	44967896	44968896	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12998.0	NM_080289	76238.0	Mm.196574	NM_080289	ENSMUSG00000035637	Grhpr	1110059D05Rik|6430629L09Rik|Glxr	glyoxylate reductase/hydroxypyruvate reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-131490044-2	chr3	131489544	131490544	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-74724.0	NM_001289479	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16404925-2	chr7	16404425	16405425	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198631, intron 1 of 13)	intron (NM_198631, intron 1 of 13)	3729.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35172594-2	chr7	35172094	35173094	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13791.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	0.0	1.5	0.0	0.0	9.0	1.5
Merged-chr10-22353065-2	chr10	22352563	22353563	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	MLTR14|LTR|ERV1	-8831.0	NM_020030	56554.0	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	0.0	1.0	6.0	8.5	6.5	6.0
Merged-chr10-88717599-2	chr10	88717099	88718099	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	13502.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109265884-2	chr3	109265384	109266384	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	-74799.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-26709880-2	chr18	26709380	26710380	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-955723.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31135838-2	chr6	31135338	31136338	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-72745.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53755467-2	chr11	53754967	53755967	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	8187.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107881741-2	chr13	107881241	107882241	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	8323.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.0	0.0	0.0	2.5	7.5	2.0
Merged-chr10-58495789-2	chr10	58495289	58496289	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2148.0	NM_001162956	76138.0	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123934250-2	chr5	123933750	123934750	+	574.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001134767, exon 2 of 13)	exon (NM_001134767, exon 2 of 13)	3561.0	NM_001134767	208908.0	Mm.243679	NM_001134767	ENSMUSG00000061882	Ccdc62	AI661708|G1-485-3|Gm150|repro29	coiled-coil domain containing 62	protein-coding	1.5	14.0	9.0	3.0	9.0	5.5
Merged-chr8-54528578-2	chr8	54528078	54529078	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029701, intron 1 of 4)	intron (NM_029701, intron 1 of 4)	1420.0	NM_029701	76687.0	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik|SPC22/23	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98888608-2	chr10	98888108	98889108	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26034.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63136213-2	chr14	63135713	63136713	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 4 of 9)	intron (NM_007798, intron 4 of 9)	13751.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29493048-2	chr7	29492548	29493548	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081028, intron 2 of 22)	intron (NM_001081028, intron 2 of 22)	12412.0	NM_001081028	74206.0	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-73220461-2	chr6	73219961	73220961	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164669, intron 1 of 76)	MTD|LTR|ERVL-MaLR	1170.0	NM_001164669	330355.0	Mm.333166	NM_001164669	ENSMUSG00000052861	Dnah6	9830168K20|A730004I20Rik|Dnahc6|mKIAA1697|mdhc6	dynein, axonemal, heavy chain 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55477525-2	chr16	55477025	55478025	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17206.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128775551-2	chr4	128775051	128776051	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081098, intron 8 of 8)	ORR1B1|LTR|ERVL-MaLR	16293.0	NM_001009819	215493.0	Mm.300900	NM_001009819	ENSMUSG00000028794	A3galt2	Gm433|iGb3|iGb3S	alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-3238415-2	chr16	3237915	3238915	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TACTG)n|Simple_repeat|Simple_repeat	-353983.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-6992840-2	chr3	6992340	6993340	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-372397.0	NM_027048	69347.0	Mm.45822	NM_027048	ENSMUSG00000069118	1700008P02Rik	-	RIKEN cDNA 1700008P02 gene	protein-coding	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr10-128802317-2	chr10	128801817	128802817	+	574.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_178066, exon 3 of 5)	exon (NM_178066, exon 3 of 5)	1650.0	NM_001358267	73827.0	Mm.24630	NM_178066	ENSMUSG00000047090	Tmem198b	1110012D08Rik	transmembrane protein 198b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32958412-2	chr2	32957912	32958912	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199302, intron 2 of 24)	B1_Mus1|SINE|Alu	2843.0	NM_199302	227738.0	Mm.248037	NM_199302	ENSMUSG00000026792	Lrsam1	-	leucine rich repeat and sterile alpha motif containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165677323-2	chr1	165676823	165677823	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	30771.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70113651-2	chr14	70113151	70114151	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021328, intron 1 of 8)	PB1D11|SINE|Alu	13558.0	NM_001360404	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25835266-2	chr14	25834766	25835766	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1|DNA|hAT-Tip100	-6889.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45235583-2	chr9	45235083	45236083	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 1 of 4)	intron (NM_001198971, intron 1 of 4)	31124.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94908021-2	chr13	94907521	94908521	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR27|LTR|ERVK	32394.0	NM_011021	18420.0	Mm.42051	NM_011021	ENSMUSG00000021685	Otp	-	orthopedia homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94918042-2	chr10	94917542	94918542	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 2 of 30)	intron (NM_018797, intron 2 of 30)	26536.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32507941-2	chr2	32507441	32508441	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27418.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32709929-2	chr2	32709429	32710429	+	574.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_130860, exon 5 of 7)	exon (NM_130860, exon 5 of 7)	2855.0	NM_130860	107951.0	Mm.27557	NM_130860	ENSMUSG00000009555	Cdk9	PITALRE	cyclin-dependent kinase 9 (CDC2-related kinase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31182887-2	chr2	31182387	31183387	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178760, intron 9 of 17)	intron (NM_178760, intron 9 of 17)	30571.0	NM_178760	277463.0	Mm.236074	NM_178760	ENSMUSG00000000194	Gpr107	9930033D15Rik|AI790205|C530034M11|mKIAA1624	G protein-coupled receptor 107	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152293289-1	chr2	152292789	152293789	+	574.5	f0_balb.idr	promoter-TSS (NM_024196)	promoter-TSS (NM_024196)	-583.0	NM_024196	67231.0	Mm.288733	NM_024196	ENSMUSG00000027465	Tbc1d20	1110028I04Rik|2810442O16Rik|AI414693|bs	TBC1 domain family, member 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-178098318-2	chr2	178097818	178098818	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19893.0	NM_001162922	353208.0	Mm.381194	NM_001162922	ENSMUSG00000078861	Zfp931	2810021G02Rik	zinc finger protein 931	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-44184162-2	chr15	44183662	44184662	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-11973.0	NM_013696	22045.0	Mm.309350	NM_013696	ENSMUSG00000038760	Trhr	TRH-R1	thyrotropin releasing hormone receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90353230-2	chr7	90352730	90353730	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040085, intron 2 of 18)	intron (NM_001040085, intron 2 of 18)	-33751.0	NM_001040087	83671.0	Mm.26751	NM_031394	ENSMUSG00000030616	Sytl2	AI266830|Slp2|mKIAA1597	synaptotagmin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118182018-2	chr11	118181518	118182518	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 9 of 12)	intron (NM_001112700, intron 9 of 12)	30724.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73636565-2	chr15	73636065	73637065	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11821.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-29507486-2	chr15	29506986	29507986	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	205918.0	NR_039542	100628607.0		NR_039542	ENSMUSG00000092639	Mir3964	mmu-mir-3964|mu-mir-3964	microRNA 3964	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78183963-2	chr11	78183463	78184463	+	574.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207523)	promoter-TSS (NM_207523)	-379.0	NM_207523	268449.0	Mm.22723	NM_207523	ENSMUSG00000058546	Rpl23a	BC029892|MDA20	ribosomal protein L23A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148086730-2	chr4	148086230	148087230	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301281, intron 1 of 4)	ID_B1|SINE|B4	1334.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92392585-2	chr16	92392085	92393085	+	574.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081549, exon 4 of 4)	3' UTR (NM_001081549, exon 4 of 4)	7493.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43274580-2	chr7	43274080	43275080	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	38720.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-25010357-2	chr16	25009857	25010857	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-49282.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-149377746-2	chr5	149377246	149378246	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34003.0	NM_027519	70717.0	Mm.252139	NM_027519	ENSMUSG00000029659	Medag	6330406I15Rik|Awms3|MEDA-4|Meda4|mAWMS3	mesenteric estrogen dependent adipogenesis	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46304298-2	chr4	46303798	46304798	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39896.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-64908983-2	chr16	64908483	64909483	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	56982.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12440090-2	chr15	12439590	12440590	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081064, intron 4 of 23)	intron (NM_001081064, intron 4 of 23)	118594.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-35129805-2	chr4	35129305	35130305	+	574.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-22250.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54902020-1	chr18	54901520	54902520	+	574.333313	f0_balb.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	88160.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99492908-3	chr9	99492428	99493428	+	574.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028768, intron 18 of 21)	intron (NM_028768, intron 18 of 21)	22507.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-110022346-1	chr4	110021846	110022846	+	574.333313	f1_c57bl6.idr	Intergenic	Intergenic	44321.0	NM_172296	242620.0	Mm.32825	NM_172296	ENSMUSG00000047143	Dmrta2	Dmrt5	doublesex and mab-3 related transcription factor like family A2	protein-coding	1.0	0.5	0.0	0.0	0.0	0.0
Merged-chr5-151394143-3	chr5	151393632	151394632	+	574.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045699, intron 3 of 3)	intron (NR_045699, intron 3 of 3)	-12372.0	NR_131166	100042166.0	Mm.443286	NR_131166	ENSMUSG00000097321	Gm3704	-	predicted gene 3704	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117314192-2	chr5	117313692	117314692	+	574.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5074.0	NM_001033311	231668.0	Mm.298603	NM_001033311	ENSMUSG00000066894	Vsig10	-	V-set and immunoglobulin domain containing 10	protein-coding	0.0	5.0	4.5	2.0	5.5	1.0
Merged-chr2-84458134-3	chr2	84457626	84458626	+	574.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001177320, exon 3 of 8)	exon (NM_001177320, exon 3 of 8)	16048.0	NM_011576	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr6-4544758-1	chr6	4544258	4545258	+	574.333313	f0_balb.idr	Intergenic	Intergenic	39140.0	NM_007743	12843.0	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24979620-2	chr16	24979120	24980120	+	574.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001145952, exon 12 of 12)	3' UTR (NM_001145952, exon 12 of 12)	-80019.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13706305-2	chr16	13705805	13706805	+	574.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-23531.0	NR_040574	76684.0	Mm.491043	NR_040574	ENSMUSG00000086550	Pla2g10os	1810007I06Rik	phospholipase A2, group X, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34655666-2	chr7	34655112	34656112	+	574.25	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_001360818)	promoter-TSS (NM_001360818)	-103.0	NM_001360818	233107.0	Mm.76761	NM_146188	ENSMUSG00000030499	Kctd15	BC031749	potassium channel tetramerisation domain containing 15	protein-coding	0.0	0.0	0.0	0.5	1.0	0.0
Merged-chr2-29678171-2	chr2	29677671	29678671	+	574.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	PB1D9|SINE|Alu	58451.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45484083-2	chr17	45483583	45484583	+	574.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9145.0	NM_001357831	71020.0	Mm.44257	NM_027649	ENSMUSG00000023935	Spats1	1700011H05Rik|4933400B06Rik|Ddip|Srsp1	spermatogenesis associated, serine-rich 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64265361-1	chr5	64264861	64265861	+	574.0	f0_balb.idr	intron (NM_001289514, intron 5 of 18)	intron (NM_001289514, intron 5 of 18)	35004.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	5.0	25.5	25.0	2.5	6.0	12.0
Merged-chr19-3605017-1	chr19	3604517	3605517	+	574.0	f1_balb.idr	intron (NM_008513, intron 14 of 22)	intron (NM_008513, intron 14 of 22)	-29268.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	1.5	1.5	0.5	1.5	0.0	0.5
Merged-chr17-33984563-1	chr17	33984063	33985063	+	574.0	f1_c57bl6.idr	non-coding (NR_033305, exon 1 of 1)	non-coding (NR_033305, exon 1 of 1)	3071.0	NR_033305	433100.0	Mm.380381	NM_001013793		AA388235	-	expressed sequence AA388235	ncRNA	2.0	9.0	8.0	0.0	1.5	4.0
Merged-chr19-36818349-1	chr19	36817849	36818849	+	574.0	f0_balb.idr	Intergenic	B3A|SINE|B2	-15883.0	NM_001163635	74493.0	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	0.0	0.5	5.0	1.0	14.5	7.0
Merged-chr12-111514250-1	chr12	111513750	111514750	+	574.0	f1_c57bl6.idr	Intergenic	Intergenic	-23851.0	NM_178041	217869.0	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77793923-2	chr18	77793423	77794423	+	574.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013831)	promoter-TSS (NM_013831)	-627.0	NM_013831	19201.0	Mm.57174	NM_013831	ENSMUSG00000025429	Pstpip2	MAYP|cmo	proline-serine-threonine phosphatase-interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117486582-2	chr8	117486082	117487082	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-11693.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-27407575-2	chr16	27407075	27408075	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289436, intron 4 of 11)	intron (NM_001289436, intron 4 of 11)	18619.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131115564-2	chr1	131115064	131116064	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17721.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99193741-2	chr10	99193241	99194241	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 12 of 12)	intron (NR_153333, intron 12 of 12)	-69490.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104629598-2	chr8	104629098	104630098	+	574.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_019662, exon 4 of 5)	exon (NM_019662, exon 4 of 5)	1723.0	NM_019662	56437.0	Mm.29467	NM_019662	ENSMUSG00000031880	Rrad	REM3|Rad	Ras-related associated with diabetes	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76455595-1	chr11	76455095	76456095	+	574.0	f1_balb.idr	intron (NM_001346670, intron 12 of 21)	intron (NM_001346670, intron 12 of 21)	12870.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.0	1.0	0.0	4.0	0.5	0.0
Merged-chr10-68731867-2	chr10	68731367	68732367	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	8121.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3283001-2	chr2	3282501	3283501	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1211.0	NM_008708	18108.0	Mm.65021	NM_008708	ENSMUSG00000026643	Nmt2	A930001K02Rik|AI605445|AU044698|hNMT-2	N-myristoyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38556385-2	chr6	38555885	38556885	+	574.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001331223, exon 1 of 13)	5' UTR (NM_001331223, exon 1 of 13)	662.0	NM_001331223	192196.0	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111178681-2	chr8	111178181	111179181	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 11 of 25)	intron (NM_009149, intron 11 of 25)	-33183.0	NR_040364	434350.0	Mm.442061	NR_040363		9430091E24Rik	-	RIKEN cDNA 9430091E24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34645418-2	chr13	34644918	34645918	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025831, intron 1 of 4)	intron (NM_025831, intron 1 of 4)	7263.0	NM_025831	66895.0	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-20563007-2	chr2	20562507	20563507	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177630, intron 2 of 17)	intron (NM_001177630, intron 2 of 17)	43494.0	NM_001177631	208618.0	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120186291-2	chr6	120185791	120186791	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-7532.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.0	0.0	0.5	0.0	1.5	0.0
Merged-chr9-110740054-2	chr9	110739554	110740554	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083936, intron 1 of 13)	intron (NM_001083936, intron 1 of 13)	2556.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131235711-2	chr2	131235211	131236211	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144888, intron 1 of 6)	intron (NM_144888, intron 1 of 6)	1648.0	NM_144888	228607.0	Mm.287226	NM_144888	ENSMUSG00000037523	Mavs	D430028G21Rik|IPS-1|Visa|cardif	mitochondrial antiviral signaling protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146752069-1	chr6	146751569	146752569	+	574.0	f1_c57bl6.idr	intron (NM_001346666, intron 1 of 11)	intron (NM_001346666, intron 1 of 11)	27139.0	NM_172734	232533.0	Mm.322121	NM_172734	ENSMUSG00000001630	Stk38l	4930473A22Rik|Ndr2|Ndr54	serine/threonine kinase 38 like	protein-coding	0.0	6.0	1.5	4.5	9.5	5.0
Merged-chr10-127285257-2	chr10	127284757	127285757	+	574.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_033072, exon 7 of 13)	exon (NM_033072, exon 7 of 13)	3761.0	NM_001347171	110962.0	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-54737591-2	chr6	54737091	54738091	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55967.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	0.0	2.0	0.0	1.0	2.0	1.5
Merged-chr11-54954968-2	chr11	54954468	54955468	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271456, intron 1 of 18)	RLTR11C_MM|LTR|ERVK	7972.0	NM_021327	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108293060-2	chr12	108292560	108293560	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13210.0	NM_001044380	214305.0	Mm.36423	NM_001044380	ENSMUSG00000021260	Hhipl1	1600002O04Rik|AK129450|mKIAA1822	hedgehog interacting protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-25527240-2	chr5	25526740	25527740	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2778.0	NR_027388	73571.0	Mm.105263	NR_027388	ENSMUSG00000101856	1700096K18Rik	-	RIKEN cDNA 1700096K18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92028900-1	chr5	92028400	92029400	+	574.0	f0_balb.idr	intron (NM_001276315, intron 6 of 12)	B4|SINE|B4	13796.0	NM_001276315	53886.0	Mm.44963	NM_016912	ENSMUSG00000029403	Cdkl2	5330436L21Rik|AI505225|KKIAMRE|Kkm	cyclin-dependent kinase-like 2 (CDC2-related kinase)	protein-coding	8.5	0.0	2.5	5.5	0.0	3.5
Merged-chr14-105331695-1	chr14	105331195	105332195	+	574.0	f1_balb.idr	Intergenic	RLTR9E|LTR|ERVK	73022.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	0.5	0.0	0.0	0.5	0.0	0.0
Merged-chr17-17641633-1	chr17	17641133	17642133	+	574.0	f1_c57bl6.idr	Intergenic	Intergenic	-17144.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	0.0	5.5	3.0	4.5	2.0	6.0
Merged-chr17-57233970-2	chr17	57233470	57234470	+	574.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001308074)	TTS (NM_001308074)	-5834.0	NM_009778	12266.0	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101301879-1	chr4	101301379	101302379	+	574.0	f1_balb.idr	Intergenic	Intergenic	-36597.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46655024-2	chr19	46654524	46655524	+	574.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001177812, exon 5 of 5)	3' UTR (NM_001177812, exon 5 of 5)	17976.0	NM_007809	13074.0	Mm.1262	NM_007809	ENSMUSG00000003555	Cyp17a1	Cyp17|p450c17	cytochrome P450, family 17, subfamily a, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	4.0	0.5
Merged-chr9-53699611-1	chr9	53699111	53700111	+	574.0	f1_balb.idr	intron (NM_175562, intron 1 of 1)	intron (NM_175562, intron 1 of 1)	6621.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	12.0	8.0	8.0	11.0	9.5	11.0
Merged-chr13-80955964-2	chr13	80955464	80956464	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-8110.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71126628-2	chr17	71126128	71127128	+	574.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010867, exon 38 of 38)	3' UTR (NM_010867, exon 38 of 38)	-56904.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120373017-2	chr11	120372517	120373517	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027980, intron 6 of 9)	intron (NM_027980, intron 6 of 9)	5729.0	NM_027980	71885.0	Mm.274890	NM_027980	ENSMUSG00000025384	Faap100	2310003H01Rik	Fanconi anemia core complex associated protein 100	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110421808-1	chr5	110421308	110422308	+	574.0	f1_balb.idr	intron (NM_001142642, intron 2 of 18)	intron (NM_001142642, intron 2 of 18)	26695.0	NM_001317042	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	23.5	57.0	33.5	42.5	73.5	49.0
Merged-chr11-120595958-2	chr11	120595458	120596458	+	574.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011568, exon 3 of 6)	exon (NM_011568, exon 3 of 6)	2407.0	NM_011568	21681.0	Mm.1886	NM_011568	ENSMUSG00000025134	Alyref	Aly|Ref1|Ref1-I|Refbp1|Tho4|Thoc4	Aly/REF export factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-140204043-1	chr1	140203543	140204543	+	574.0	f0_balb.idr	Intergenic	Intergenic	-20632.0	NM_009888	12628.0	Mm.8655	NM_009888	ENSMUSG00000026365	Cfh	Mud-1|NOM|Sas-1|Sas1	complement component factor h	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118160296-2	chr11	118159796	118160796	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31077.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-10899459-1	chr8	10898959	10899959	+	574.0	f0_balb.idr	promoter-TSS (NR_102285)	promoter-TSS (NR_102285)	-463.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66880791-1	chr9	66880291	66881291	+	574.0	f0_balb.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	38914.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3481093-2	chr8	3480593	3481593	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029598, intron 4 of 8)	B1_Mur4|SINE|Alu	10231.0	NM_029598	76406.0	Mm.74996	NM_029598	ENSMUSG00000040340	Tex45	1700019B03Rik	testis expressed 45	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94322690-2	chr11	94322190	94323190	+	574.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155068)	promoter-TSS (NR_155068)	-727.0	NM_001361573	67684.0	Mm.30927	NM_026313	ENSMUSG00000020863	Luc7l3	3300001P08Rik|Luc7a	LUC7-like 3 (S. cerevisiae)	protein-coding	1.5	21.5	17.0	1.5	21.5	17.0
Merged-chr7-132466098-1	chr7	132465598	132466598	+	574.0	f0_balb.idr	Intergenic	Intergenic	110300.0	NM_016978	18242.0	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80743929-1	chr7	80743429	80744429	+	574.0	f1_balb.idr	exon (NM_016721, exon 17 of 38)	exon (NM_016721, exon 17 of 38)	-55052.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	0.0	1.5	14.0	0.0	4.0	4.5
Merged-chr19-5698568-2	chr19	5698068	5699068	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022012, intron 10 of 11)	MIR|SINE|MIR	-5903.0	NM_010609	16530.0	Mm.440033	NM_010609	ENSMUSG00000024936	Kcnk7	2310014G03Rik|Kcnk6|Kcnk8|Knot|Mlk3	potassium channel, subfamily K, member 7	protein-coding	2.0	1.5	1.0	2.0	6.5	1.0
Merged-chr2-92371443-2	chr2	92370943	92371943	+	574.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290775)	promoter-TSS (NM_001290775)	-386.0	NM_001290775	228366.0	Mm.31158	NM_172670	ENSMUSG00000040434	Large2	5730485C17Rik|AI891893|Gyltl1b|Largel|mKIAA4105	LARGE xylosyl- and glucuronyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-172402936-2	chr2	172402436	172403436	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080820, intron 1 of 6)	intron (NM_001080820, intron 1 of 6)	9142.0	NM_001276423	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142421948-2	chr7	142421444	142422444	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-12906.0	NR_153437	55925.0	Mm.213002	NM_018802	ENSMUSG00000031098	Syt8	-	synaptotagmin VIII	protein-coding	3.0	3.0	10.0	2.5	2.0	7.0
Merged-chr1-148731603-1	chr1	148731103	148732103	+	574.0	f0_balb.idr	Intergenic	Intergenic	1190836.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74386307-1	chr11	74385807	74386807	+	574.0	f1_c57bl6.idr	3' UTR (NM_001015046, exon 25 of 25)	3' UTR (NM_001015046, exon 25 of 25)	21636.0	NM_001011851	258153.0	Mm.376124	NM_001011851	ENSMUSG00000058275	Olfr412	MOR127-5P	olfactory receptor 412	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84846671-1	chr18	84846171	84847171	+	574.0	f0_balb.idr	Intergenic	Intergenic	-4667.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29179342-1	chr6	29178842	29179842	+	574.0	f0_balb.idr	intron (NM_001101443, intron 1 of 4)	CpG	242.0	NM_001101443	101359.0	Mm.22818	NM_001101443	ENSMUSG00000079654	Prrt4	AW455481|D330027H18Rik	proline-rich transmembrane protein 4	protein-coding	3.5	5.5	0.0	0.0	0.0	0.0
Merged-chr11-115822319-2	chr11	115821819	115822819	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029557, intron 10 of 10)	intron (NM_029557, intron 10 of 10)	-1739.0	NM_145438	217325.0	Mm.290450	NM_145438	ENSMUSG00000020782	Llgl2	9130006H11Rik|Llglh2	LLGL2 scribble cell polarity complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129313412-1	chr2	129312912	129313912	+	574.0	f1_c57bl6.idr	Intergenic	Intergenic	-3440.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	7.5	7.5	1.5	0.0	22.0	2.0
Merged-chr6-115620056-1	chr6	115619556	115620556	+	574.0	f1_c57bl6.idr	intron (NM_029780, intron 14 of 16)	intron (NM_029780, intron 14 of 16)	18118.0	NM_023290	67027.0	Mm.101316	NM_023290	ENSMUSG00000000439	Mkrn2	2610002L04Rik|C81377	makorin, ring finger protein, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84309195-2	chr3	84308695	84309695	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A1|LTR|ERVL-MaLR	-4420.0	NM_001271726	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166636494-2	chr2	166635994	166636994	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 4 of 39)	intron (NM_177782, intron 4 of 39)	71972.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32713317-2	chr5	32712817	32713817	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33025.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	23.0	89.5	71.0	11.0	61.5	24.0
Merged-chr11-104467053-1	chr11	104466553	104467553	+	574.0	f0_balb.idr	intron (NM_001359634, intron 2 of 14)	intron (NM_001359634, intron 2 of 14)	1808.0	NM_001359634	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0.0	0.0	3.5	2.5	3.0	5.0
Merged-chr10-127531724-1	chr10	127531224	127532224	+	574.0	f1_balb.idr	intron (NM_183297, intron 1 of 1)	intron (NM_183297, intron 1 of 1)	2835.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92980354-2	chr1	92979854	92980854	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022320, intron 1 of 1)	intron (NM_022320, intron 1 of 1)	1451.0	NM_022320	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-43384936-1	chr6	43384436	43385436	+	574.0	f0_balb.idr	intron (NM_013861, intron 8 of 8)	intron (NM_013861, intron 8 of 8)	-57493.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-12289863-1	chr14	12289363	12290363	+	574.0	f0_balb.idr	intron (NM_001284385, intron 3 of 4)	intron (NM_001284385, intron 3 of 4)	5660.0	NM_001284386	218734.0	Mm.44068	NM_146051	ENSMUSG00000033111	3830406C13Rik	-	RIKEN cDNA 3830406C13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75906573-1	chr15	75906073	75907073	+	574.0	f1_balb.idr	intron (NM_029663, intron 1 of 9)	(CA)n|Simple_repeat|Simple_repeat	2771.0	NM_001285433	66656.0	Mm.258927	NM_023240	ENSMUSG00000055762	Eef1d	EF-1-delta	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-59343215-2	chr19	59342715	59343715	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033222, intron 1 of 4)	intron (NM_001033222, intron 1 of 4)	2565.0	NM_001033222	107368.0	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39736711-1	chr18	39736211	39737211	+	574.0	f1_balb.idr	Intergenic	L1_Mus1|LINE|L1	-36786.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132996474-2	chr7	132995974	132996974	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170744, intron 3 of 8)	intron (NM_001170744, intron 3 of 8)	18773.0	NM_001170744	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0.0	0.0	1.5	0.0	0.0	1.5
Merged-chr15-44618204-1	chr15	44617704	44618704	+	574.0	f0_balb.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-1023.0	NM_001357690	55960.0	Mm.287896	NM_019480	ENSMUSG00000022339	Ebag9	AI835379|Rcas1	estrogen receptor-binding fragment-associated gene 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54614414-1	chr13	54613914	54614914	+	574.0	f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3041.0	NM_001347512	74325.0	Mm.290026	NM_028870	ENSMUSG00000047547	Cltb	2310046E19Rik|lcb	clathrin, light polypeptide (Lcb)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47643451-3	chr9	47642955	47643955	+	574.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	L1MC4a|LINE|L1	113103.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	98.0	124.0	120.0	75.0	148.5	116.0
Merged-chr2-140327100-2	chr2	140326600	140327600	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033296, intron 2 of 19)	intron (NM_001033296, intron 2 of 19)	62610.0	NM_001033296	228684.0	Mm.486585	NM_001033296	ENSMUSG00000074764	Sel1l2	Gm118	sel-1 suppressor of lin-12-like 2 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46506229-1	chr19	46505729	46506729	+	574.0	f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	4581.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	22.5	69.5	51.0	32.0	57.5	64.0
Merged-chr19-43522808-1	chr19	43522308	43523308	+	574.0	f1_c57bl6.idr	intron (NM_010324, intron 1 of 8)	intron (NM_010324, intron 1 of 8)	1797.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	5.5	24.5	12.0	0.0	1.0	0.0
Merged-chr16-33166492-1	chr16	33165992	33166992	+	574.0	f0_balb.idr	Intergenic	B3|SINE|B2	-18579.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97800118-1	chr6	97799618	97800618	+	574.0	f0_balb.idr	Intergenic	Lx9|LINE|L1	-6940.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	1.0	0.0	3.0	5.0	0.0	3.0
Merged-chr17-12416446-2	chr17	12415889	12416889	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008877, intron 17 of 18)	intron (NM_008877, intron 17 of 18)	37780.0	NM_008877	18815.0	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	2.0	1.0	1.5	8.0	9.0	2.0
Merged-chr1-155046880-1	chr1	155046380	155047380	+	574.0	f1_c57bl6.idr	Intergenic	Intergenic	36384.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-78503717-2	chr9	78503217	78504217	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21993.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-94060143-3	chr6	94059649	94060649	+	574.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029850, intron 1 of 23)	intron (NM_001029850, intron 1 of 23)	-146459.0	NM_001083320	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.0	0.0	1.5	0.0	1.5	0.0
Merged-chr15-101255459-2	chr15	101254959	101255959	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-11387.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	25.5	59.0	40.0	39.5	47.0	27.5
Merged-chr1-131882975-2	chr1	131882475	131883475	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	15698.0	NM_144875	226422.0	Mm.34027	NM_144875	ENSMUSG00000026433	Rab29	Rab7l1	RAB29, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127572758-2	chr7	127572258	127573258	+	574.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026888)	promoter-TSS (NM_026888)	-590.0	NM_001360741	68961.0	Mm.274473	NM_026888	ENSMUSG00000030815	Phkg2	1500017I02Rik	phosphorylase kinase, gamma 2 (testis)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-98018934-2	chr5	98018433	98019433	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133738, intron 3 of 16)	MIRb|SINE|MIR	12029.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	5.5	0.5	0.0	3.5	2.5	3.0
Merged-chr10-69244380-2	chr10	69243880	69244880	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252638, intron 2 of 11)	intron (NM_001252638, intron 2 of 11)	31186.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97767724-2	chr7	97767224	97768224	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-20817.0	NM_001357365	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	14.0	0.0	5.5	2.0	0.0	8.5
Merged-chr12-76592471-1	chr12	76591971	76592971	+	574.0	f1_balb.idr	intron (NM_013675, intron 32 of 35)	intron (NM_013675, intron 32 of 35)	-44546.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-15625225-2	chr9	15624725	15625725	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040746, intron 2 of 4)	intron (NR_040746, intron 2 of 4)	2708.0	NM_181816	234964.0	Mm.32237	NM_181816	ENSMUSG00000039977	Deup1	4933401K09Rik|Ccdc67	deuterosome assembly protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-59351097-2	chr19	59350597	59351597	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12D|LTR|ERVK	-5317.0	NM_001033222	107368.0	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5532901-1	chr6	5532401	5533401	+	574.0	f0_balb.idr	Intergenic	Intergenic	-36623.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29104434-1	chr19	29103934	29104934	+	574.0	f1_c57bl6.idr	intron (NM_021525, intron 1 of 8)	intron (NM_021525, intron 1 of 8)	3059.0	NM_021525	59028.0	Mm.28630	NM_021525	ENSMUSG00000024785	Rcl1	2310040A02Rik|AI789745|C76567|RPCL1|Rnac	RNA terminal phosphate cyclase-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107666884-2	chr9	107666384	107667384	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199218, intron 1 of 15)	intron (NM_001199218, intron 1 of 15)	515.0	NM_023805	76257.0	Mm.296560	NM_023805	ENSMUSG00000010064	Slc38a3	0610012J02Rik|D9Ucla2|Nat1|Slc38-3|Sn1|Snat3|mNAT	solute carrier family 38, member 3	protein-coding	1.0	0.0	3.0	2.0	2.0	2.5
Merged-chr15-74957818-2	chr15	74957322	74958322	+	574.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164036, exon 2 of 4)	exon (NM_001164036, exon 2 of 4)	2716.0	NM_001164040	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	70.0	135.5	112.5	63.5	197.5	115.5
Merged-chr2-71390789-2	chr2	71390289	71391289	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026115, intron 2 of 10)	intron (NM_026115, intron 2 of 10)	1529.0	NM_026115	107435.0	Mm.272472	NM_026115	ENSMUSG00000027018	Hat1	2410071B14Rik|AA536933|Hat-1|KAT1	histone aminotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-83438562-2	chr14	83438062	83439062	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	636728.0	NR_153783	102635012.0	Mm.399509	NR_153783	ENSMUSG00000115043	Gm32455	-	predicted gene, 32455	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134247606-1	chr4	134247106	134248106	+	574.0	f1_c57bl6.idr	Intergenic	Intergenic	-2015.0	NM_024215	68040.0	Mm.300404	NM_024215	ENSMUSG00000028840	Zfp593	3110024A21Rik|AV062409|E130106C14Rik|ZNF593	zinc finger protein 593	protein-coding	0.0	0.0	3.0	0.0	0.0	0.0
Merged-chr12-84030745-1	chr12	84030245	84031245	+	574.0	f0_balb.idr	Intergenic	Intergenic	-7634.0	NM_134247	171282.0	Mm.482217	NM_134247	ENSMUSG00000052392	Acot4	B430212I04Rik|PTE-Ib|Pte1b|Pte2b	acyl-CoA thioesterase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-53005425-1	chr2	53004925	53005925	+	574.0	f0_balb.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	147557.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75993738-1	chr15	75993238	75994238	+	574.0	f0_balb.idr	promoter-TSS (NM_177922)	promoter-TSS (NM_177922)	-31.0	NM_177922	332110.0	Mm.40843	NM_177922	ENSMUSG00000063704	Mapk15	BC048082	mitogen-activated protein kinase 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21848982-2	chr16	21848482	21849482	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42987.0	NM_172821	71751.0	Mm.420837	NM_172821	ENSMUSG00000033618	Map3k13	C130026N12Rik|LZK	mitogen-activated protein kinase kinase kinase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70258106-2	chr9	70257606	70258606	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 1 of 27)	MER90a|LTR|ERV1	50756.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-96806867-2	chr5	96806364	96807364	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013470, intron 2 of 12)	intron (NM_013470, intron 2 of 12)	13479.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	19.0	48.5	28.0	7.5	38.0	30.5
Merged-chr5-122689665-1	chr5	122689165	122690165	+	574.0	f1_c57bl6.idr	intron (NM_001038845, intron 12 of 12)	B4A|SINE|B4	7068.0	NR_106195	102465902.0		NR_106195	ENSMUSG00000099324	Mir8115	Gm28012|mmu-mir-8115	microRNA 8115	ncRNA	11.5	15.5	7.5	1.0	22.5	9.5
Merged-chr8-105282886-2	chr8	105282386	105283386	+	574.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_030152)	TTS (NM_030152)	6439.0	NM_030152	78688.0	Mm.475715	NM_030152	ENSMUSG00000014776	Nol3	ARC|B430311C09Rik|MYC|NOP|Nop30	nucleolar protein 3 (apoptosis repressor with CARD domain)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-119026141-2	chr14	119025641	119026641	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081252, intron 27 of 38)	L1MA5A|LINE|L1	-72824.0	NR_153786	102635192.0	Mm.398079	NR_153786		Gm16835	-	predicted gene, 16835	ncRNA	4.0	0.0	3.5	1.5	8.5	0.0
Merged-chr7-35140585-2	chr7	35140085	35141085	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21292.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40855403-2	chr4	40854903	40855903	+	573.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022305)	promoter-TSS (NM_022305)	-866.0	NM_022305	14595.0	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167808004-2	chr2	167807504	167808504	+	573.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116827.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118839233-2	chr9	118838733	118839733	+	573.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 6 of 13)	intron (NM_001113514, intron 6 of 13)	-87303.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107939304-2	chr4	107938804	107939804	+	573.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14628.0	NR_131071	77223.0	Mm.401926	NR_131071	ENSMUSG00000086713	4930407G08Rik	-	RIKEN cDNA 4930407G08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130952569-2	chr4	130952069	130953069	+	573.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010769, intron 5 of 7)	intron (NM_010769, intron 5 of 7)	8184.0	NM_010769	17180.0	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29248229-2	chr7	29247729	29248729	+	573.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001110201)	TTS (NM_001110201)	238.0	NM_028179	72275.0	Mm.441142	NM_028179	ENSMUSG00000030587	2200002D01Rik	2010005J02Rik|H2RSP|IMUP|IMUP-1|IMUP-2	RIKEN cDNA 2200002D01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35933130-2	chr18	35932630	35933630	+	573.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31700.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56081920-2	chr17	56081420	56082420	+	573.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008233, intron 1 of 15)	intron (NM_008233, intron 1 of 15)	2289.0	NM_001304785	15193.0	Mm.12966	NM_008233	ENSMUSG00000002833	Hdgfl2	HRP-2|Hdgfrp2	HDGF like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-123053336-3	chr3	123052808	123053808	+	573.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18321.0	NM_001355462	59006.0	Mm.141157	NM_021503	ENSMUSG00000028116	Myoz2	1110012I24Rik|Fatz-2|Myozl2	myozenin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97627118-2	chr11	97626637	97627637	+	573.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175332)	TTS (NM_175332)	2579.0	NM_175332	103551.0	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	0.0	0.5	0.5	8.5	0.5	2.0
Merged-chr9-114782490-2	chr9	114782025	114783025	+	573.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133978)	promoter-TSS (NM_133978)	-532.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	55.5	99.0	84.5	44.5	49.0	81.0
Merged-chr10-10428410-2	chr10	10427910	10428910	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 9 of 36)	intron (NM_001127353, intron 9 of 36)	43904.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117432253-2	chr2	117431753	117432753	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89376.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19339615-2	chr7	19339115	19340115	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-5456.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-65577871-2	chr16	65577371	65578371	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15174.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	1.5	7.5	10.5	0.0	3.5	3.0
Merged-chr19-36975272-2	chr19	36974772	36975772	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080706, intron 14 of 37)	B2_Mm1t|SINE|B2	49193.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	0.0	0.0	0.0	0.0	0.5	1.0
Merged-chr8-115603839-2	chr8	115603339	115604339	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103055.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-20496644-2	chr17	20496144	20497144	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-5655.0	NM_134194	171228.0	Mm.377186	NM_134194	ENSMUSG00000043537	Vmn1r225	V1re5	vomeronasal 1 receptor 225	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120878307-2	chr7	120877807	120878807	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001267710, intron 4 of 17)	intron (NM_001267710, intron 4 of 17)	27118.0	NM_001267711	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-105430798-2	chr14	105430317	105431317	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045859, intron 1 of 2)	intron (NR_045859, intron 1 of 2)	3258.0	NR_045859	71362.0	Mm.410781	NR_045859	ENSMUSG00000115548	5430440P10Rik	-	RIKEN cDNA 5430440P10 gene	ncRNA	0.5	0.0	1.5	0.0	0.0	0.5
Merged-chr2-13112316-2	chr2	13111816	13112816	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009105, intron 8 of 8)	intron (NM_009105, intron 8 of 8)	-101452.0	NM_153155	227580.0	Mm.229322	NM_153155	ENSMUSG00000049630	C1ql3	1110065A22Rik|AI661623|C1ql|C1qtnf13|CTRP13|K100	C1q-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86904369-2	chr17	86903869	86904869	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12979.0	NM_001277980	78469.0	Mm.67234	NM_030104	ENSMUSG00000037689	Tmem247	1700090G07Rik	transmembrane protein 247	protein-coding	4.5	5.5	0.0	1.0	1.0	6.0
Merged-chr6-21804384-2	chr6	21803884	21804884	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173007, intron 6 of 8)	intron (NM_173007, intron 6 of 8)	48131.0	NM_173007	269831.0	Mm.21950	NM_173007	ENSMUSG00000029669	Tspan12	9030619E17|AI426782|AI663988|AW111457|Tm4sf12	tetraspanin 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92667298-2	chr1	92666798	92667798	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18457.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-83039779-2	chr2	83039279	83040279	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-604799.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38279124-2	chr15	38278624	38279624	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20776.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149549858-2	chr4	149549358	149550358	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023465, intron 4 of 4)	intron (NM_023465, intron 4 of 4)	4741.0	NM_001141930	67087.0	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	1.5	0.0	0.0	0.0	0.5	0.0
Merged-chr9-47730830-2	chr9	47730330	47731330	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	87378.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	5.0	5.5	10.0	11.5	8.5	5.0
Merged-chr16-12096507-2	chr16	12096007	12097007	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028277, intron 2 of 4)	B4A|SINE|B4	112394.0	NM_001174086	72555.0	Mm.310139	NM_028277	ENSMUSG00000022494	Shisa9	2700045P11Rik|Ckamp44	shisa family member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62063926-2	chr15	62063426	62064426	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	CT-rich|Low_complexity|Low_complexity	24669.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-50763706-2	chr10	50763206	50764206	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 34 of 41)	intron (NM_198007, intron 34 of 41)	-131945.0	NM_011376	20464.0	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded family bHLH transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67547428-2	chr10	67546928	67547928	+	573.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001005419, exon 1 of 1)	3' UTR (NM_001005419, exon 1 of 1)	1527.0	NM_001005419	211488.0	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37234017-2	chr10	37233517	37234517	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95091.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-18232169-2	chr14	18231669	18232669	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011584, intron 1 of 7)	MMERGLN_LTR|LTR|ERV1	6937.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-72793654-2	chr15	72793154	72794154	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029640, intron 16 of 21)	intron (NM_029640, intron 16 of 21)	16670.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-25610628-2	chr19	25610128	25611128	+	573.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177360)	promoter-TSS (NM_177360)	91.0	NM_177360	240590.0	Mm.62785	NM_177360	ENSMUSG00000042372	Dmrt3	-	doublesex and mab-3 related transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120440971-2	chr5	120440471	120441471	+	573.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008499, exon 5 of 5)	3' UTR (NM_008499, exon 5 of 5)	9085.0	NM_008499	16873.0	Mm.5151	NM_008499	ENSMUSG00000029595	Lhx5	Lim2	LIM homeobox protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79362611-2	chr15	79362111	79363111	+	573.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001253817, exon 9 of 9)	3' UTR (NM_001253817, exon 9 of 9)	12689.0	NR_035464	100316695.0		NR_035464	ENSMUSG00000088901	Mir1943	mir-1943|mmu-mir-1943	microRNA 1943	ncRNA	0.0	5.0	0.0	0.0	4.0	1.0
Merged-chr2-154654432-2	chr2	154653932	154654932	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2594.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0.0	0.0	3.0	0.0	0.0	0.0
Merged-chr5-85992864-2	chr5	85992364	85993364	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	72719.0	NM_001345902	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	0.0	3.5	0.0	1.0	0.0	0.0
Merged-chr3-79674319-2	chr3	79673819	79674819	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_212452, intron 5 of 17)	intron (NM_212452, intron 5 of 17)	45240.0	NM_029482	75939.0	Mm.221520	NM_029482	ENSMUSG00000027811	4930579G24Rik	-	RIKEN cDNA 4930579G24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr2-163747161-2	chr2	163746661	163747661	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001272052, intron 1 of 11)	intron (NM_001272052, intron 1 of 11)	3078.0	NM_007398	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34436006-2	chr1	34435506	34436506	+	573.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027159)	TTS (NM_027159)	-2807.0	NR_039562	100628580.0		NR_039562	ENSMUSG00000092852	Mir5103	mir-5103|mmu-mir-5103|mu-mir-5103	microRNA 5103	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51644525-2	chr11	51644025	51645025	+	573.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_145974, exon 4 of 5)	exon (NM_145974, exon 4 of 5)	-6429.0	NR_027958	97775.0	Mm.220299	NM_175289	ENSMUSG00000052563	D930048N14Rik	AI315703|R75254	RIKEN cDNA D930048N14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-81426483-2	chr17	81425983	81426983	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 7 of 8)	intron (NR_104580, intron 7 of 8)	311904.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3418303-2	chr2	3417803	3418803	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355205, intron 1 of 3)	intron (NM_001355205, intron 1 of 3)	294.0	NM_001355210	104362.0	Mm.2688	NM_008579	ENSMUSG00000026650	Meig1	MLZ-278|Meg1	meiosis expressed gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-18814141-2	chr13	18813641	18814641	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 9 of 28)	intron (NM_172120, intron 9 of 28)	96849.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	0.5	6.0	0.0	2.0	3.0	0.0
Merged-chr3-93149061-2	chr3	93148561	93149561	+	573.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081200, exon 3 of 3)	exon (NM_001081200, exon 3 of 3)	4274.0	NM_001081200	381457.0	Mm.458570	NM_001081200	ENSMUSG00000078657	Crnn	Gm1015	cornulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64347553-2	chr9	64347053	64348053	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6296.0	NM_001001295	213550.0	Mm.268341	NM_172519	ENSMUSG00000032396	Dis3l	AV340375	DIS3 like exosome 3'-5' exoribonuclease	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76305923-2	chr15	76305423	76306423	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153122, intron 3 of 26)	intron (NM_153122, intron 3 of 26)	1322.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5623848-2	chr17	5623348	5624348	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	131248.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111122551-2	chr12	111122051	111123051	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43819.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-51613906-2	chr8	51613406	51614406	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E|LTR|ERVL-MaLR	-742705.0	NR_151738	330767.0	Mm.246790	NR_151738	ENSMUSG00000110013	1190028D05Rik	-	RIKEN cDNA 1190028D05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75855300-2	chr7	75854800	75855800	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029652, intron 1 of 2)	intron (NM_029652, intron 1 of 2)	6962.0	NM_029652	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.0	2.0	0.0	1.5	0.0	2.5
Merged-chr13-32799889-2	chr13	32799389	32800389	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12G|LTR|ERVK	-2141.0	NM_030215	78903.0	Mm.286680	NM_030215	ENSMUSG00000021400	Wrnip1	4833444L21Rik|WHIP|Wrnip	Werner helicase interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70913214-2	chr12	70912714	70913714	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24643.0	NM_019785	56444.0	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101847564-2	chr5	101847062	101848062	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 62 of 66)	ORR1D1|LTR|ERVL-MaLR	82432.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	1.0	1.5	0.0	1.5	0.0	0.0
Merged-chr13-106690253-2	chr13	106689753	106690753	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	246705.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	0.0	3.5	1.0	0.0	3.5	1.0
Merged-chr4-11167093-2	chr4	11166593	11167593	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021897, intron 3 of 3)	intron (NM_021897, intron 3 of 3)	10652.0	NM_021897	60599.0	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap|p53DINP1	transformation related protein 53 inducible nuclear protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106744812-2	chr11	106744312	106745312	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A1|LTR|ERVL	-6414.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-18262353-2	chr14	18261853	18262853	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	8628.0	NM_001359897	66480.0	Mm.2050	NM_025586	ENSMUSG00000012405	Rpl15	2510008H07Rik	ribosomal protein L15	protein-coding	6.5	0.0	2.5	0.5	4.5	1.5
Merged-chr1-151219236-2	chr1	151218736	151219736	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	81202.0	NR_038011	402734.0	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74381375-2	chr11	74380875	74381875	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	16704.0	NM_001011851	258153.0	Mm.376124	NM_001011851	ENSMUSG00000058275	Olfr412	MOR127-5P	olfactory receptor 412	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78126958-2	chr11	78126458	78127458	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145430, intron 1 of 2)	Lx8|LINE|L1	32285.0	NM_145430	216971.0	Mm.119387	NM_145430	ENSMUSG00000037750	Fam222b	9630020I17Rik	family with sequence similarity 222, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28057377-2	chr17	28056877	28057877	+	573.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001286040, exon 22 of 25)	exon (NM_001286040, exon 22 of 25)	23207.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35037816-2	chr7	35037316	35038316	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 12 of 14)	intron (NM_008820, intron 12 of 14)	18750.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128376244-2	chr7	128375744	128376744	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 4 of 4)	intron (NM_026418, intron 4 of 4)	41928.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-66094942-3	chr17	66094436	66095436	+	573.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028388, intron 1 of 7)	intron (NM_028388, intron 1 of 7)	6623.0	NM_001278415	72900.0	Mm.2206	NM_028388	ENSMUSG00000024099	Ndufv2	2900010C23Rik	NADH dehydrogenase (ubiquinone) flavoprotein 2	protein-coding	1.5	3.5	3.5	0.0	0.0	7.0
Merged-chr12-111809025-2	chr12	111808525	111809525	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028875, intron 4 of 7)	intron (NM_028875, intron 4 of 7)	4854.0	NM_028875	74335.0	Mm.19082	NM_028875	ENSMUSG00000021287	Xrcc3	-	X-ray repair complementing defective repair in Chinese hamster cells 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148406059-2	chr2	148405559	148406559	+	573.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009378, exon 1 of 1)	3' UTR (NM_009378, exon 1 of 1)	2129.0	NM_009378	21824.0	Mm.24096	NM_009378	ENSMUSG00000074743	Thbd	AI385582|CD141|TM	thrombomodulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125520890-2	chr5	125520390	125521390	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11528.0	NM_001190352	208151.0	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5847620-2	chr13	5847120	5848120	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10472.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79060040-2	chr15	79059540	79060540	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144849, intron 2 of 7)	B4A|SINE|B4	2819.0	NM_144849	223690.0	Mm.24262	NM_144849	ENSMUSG00000033055	Ankrd54	C730048E16Rik|EST1068184|EST475269|Liar	ankyrin repeat domain 54	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-81797173-2	chr18	81796673	81797673	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	194907.0	NR_039589	100628596.0		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101144545-2	chr11	101144045	101145045	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11339.0	NM_134028	103768.0	Mm.142348	NM_134028	ENSMUSG00000045007	Tubg2	AI504772|Tubgl	tubulin, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-190626774-2	chr1	190626274	190627274	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	223126.0	NR_151624	433390.0	Mm.331295	NR_151624	ENSMUSG00000103644	Gm29678	-	predicted gene, 29678	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-89979205-2	chr7	89978705	89979705	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021876, intron 1 of 11)	intron (NM_021876, intron 1 of 11)	1771.0	NM_021876	13626.0	Mm.380914	NM_021876	ENSMUSG00000030619	Eed	l(7)5Rn|l7Rn5|lusk	embryonic ectoderm development	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr12-111943431-2	chr12	111942931	111943931	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_029464, intron 2 of 2)	intron (NR_029464, intron 2 of 2)	1051.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-16341531-2	chr3	16341031	16342031	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	158366.0	NM_172677	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr2-60721185-2	chr2	60720685	60721685	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159564, intron 1 of 17)	intron (NM_001159564, intron 1 of 17)	1418.0	NM_001159564	16420.0	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-136402402-2	chr2	136401902	136402902	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-14435.0	NM_172858	241656.0	Mm.131572	NM_172858	ENSMUSG00000039913	Pak7	2900083L08Rik|PAK-5|PAK-7|Pak5	p21 (RAC1) activated kinase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93606047-2	chr16	93605547	93606547	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1790.0	NM_007620	12408.0	Mm.26940	NM_007620	ENSMUSG00000051483	Cbr1	AW261796|CR|Cbr	carbonyl reductase 1	protein-coding	1.5	0.0	0.0	0.0	0.0	0.0
Merged-chr7-47054363-2	chr7	47053863	47054863	+	573.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026436, exon 3 of 3)	3' UTR (NM_026436, exon 3 of 3)	3723.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100947655-2	chr11	100947155	100948155	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-8115.0	NM_011486	20848.0	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98842406-2	chr15	98841906	98842906	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033276, intron 43 of 54)	intron (NM_001033276, intron 43 of 54)	-10898.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36546721-4	chr5	36546336	36547336	+	573.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	-16213.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	5.5	7.0	13.5	1.5	3.0	1.0
Merged-chr2-44987757-2	chr2	44987257	44988257	+	573.375	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001355289, exon 11 of 11)	3' UTR (NM_001355289, exon 11 of 11)	35420.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-129590955-3	chr3	129590450	129591450	+	573.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130450, intron 2 of 4)	intron (NM_130450, intron 2 of 4)	-58562.0	NR_153368	102639747.0	Mm.393257	NR_153368		Gm35986	-	predicted gene, 35986	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101599485-3	chr7	101598988	101599988	+	573.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1ME|LINE|L1	-18327.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-66141131-2	chr2	66140646	66141646	+	573.25	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16353.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83703385-2	chr11	83702885	83703885	+	573.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081957)	promoter-TSS (NM_001081957)	-671.0	NM_001081957	100034251.0	Mm.24097	NM_001081957	ENSMUSG00000069792	Wfdc17	Amwap|Gm11428	WAP four-disulfide core domain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-22029282-3	chr13	22028810	22029810	+	573.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6333.0	NM_175659	319168.0	Mm.250564	NM_175659	ENSMUSG00000069302	Hist1h2ah	-	histone cluster 1, H2ah	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-54013312-3	chr3	54012804	54013804	+	573.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-142753.0	NM_001253683	22066.0	Mm.10100	NM_016984	ENSMUSG00000027748	Trpc4	CCE1|STRPC4|Trp4|Trrp4	transient receptor potential cation channel, subfamily C, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-46997362-2	chr13	46996862	46997862	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	17488.0	NM_175340	105193.0	Mm.25593	NM_175340	ENSMUSG00000044231	Nhlrc1	AI505271|B230309E09Rik|EPM2B	NHL repeat containing 1	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr8-119814500-2	chr8	119814084	119815084	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 3 of 3)	intron (NM_028071, intron 3 of 3)	25995.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142932648-2	chr3	142932148	142933148	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	50153.0	NR_152127	320229.0	Mm.187582	NR_152127		9530052C20Rik	-	RIKEN cDNA 9530052C20 gene	ncRNA	7.0	3.5	1.0	0.0	1.0	2.0
Merged-chr18-39587056-1	chr18	39586556	39587556	+	573.0	f0_balb.idr	Intergenic	Intergenic	-99811.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-96760555-1	chr14	96760055	96761055	+	573.0	f1_c57bl6.idr	Intergenic	MERV1_I-int|LTR|ERV1	-241521.0	NM_053105	93688.0	Mm.308735	NM_053105	ENSMUSG00000022076	Klhl1	mKIAA1490	kelch-like 1	protein-coding	1.5	6.5	2.5	3.5	7.5	2.0
Merged-chr5-136989391-1	chr5	136988891	136989891	+	573.0	f1_c57bl6.idr	intron (NM_011962, intron 6 of 18)	ID4_|SINE|ID	-1432.0	NM_027318	70103.0	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	4.0	5.0	4.5	1.5	0.0	3.5
Merged-chr16-31354784-2	chr16	31354284	31355284	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29494.0	NR_155301	102636590.0	Mm.45825	NR_155301		AV205837	-	expressed sequence AV205837	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100548825-2	chr11	100548325	100549325	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028918, intron 1 of 11)	intron (NM_028918, intron 1 of 11)	3193.0	NM_028918	74407.0	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-15712328-2	chr9	15711828	15712828	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172289, intron 1 of 10)	intron (NM_172289, intron 1 of 10)	2590.0	NM_172289	234967.0	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120626492-2	chr5	120625992	120626992	+	573.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028041, exon 18 of 20)	exon (NM_028041, exon 18 of 20)	7743.0	NM_001195094	546886.0	Mm.464847	NM_001195094	ENSMUSG00000094282	Cfap73	Ccdc42b|Gm5988	cilia and flagella associated protein 73	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10391922-1	chr17	10391422	10392422	+	573.0	f1_balb.idr	Intergenic	Intergenic	-64294.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77857677-2	chr15	77857177	77858177	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15502.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-12599183-2	chr3	12598683	12599683	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL1|LINE|L1	-754824.0	NR_040751	100038545.0	Mm.388494	NR_040751	ENSMUSG00000104015	Gm10745	-	predicted gene 10745	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-115689292-1	chr8	115688792	115689792	+	573.0	f0_balb.idr	Intergenic	Intergenic	17602.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165448640-1	chr2	165448140	165449140	+	573.0	f0_balb.idr	exon (NM_054055, exon 2 of 13)	exon (NM_054055, exon 2 of 13)	24557.0	NM_054055	114644.0	Mm.250738	NM_054055	ENSMUSG00000018459	Slc13a3	NaDC-3|NaDC3|SDCT2	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-35889541-2	chr4	35889041	35890041	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166000, intron 8 of 8)	intron (NM_001166000, intron 8 of 8)	-44337.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	0.0	3.0	3.0	1.5	1.5	1.0
Merged-chr14-107559016-2	chr14	107558516	107559516	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-1072496.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-91786817-1	chr14	91786317	91787317	+	573.0	f1_balb.idr	Intergenic	Intergenic	1659926.0	NR_045712	74967.0	Mm.390704	NR_045712	ENSMUSG00000115001	4930474H20Rik	-	RIKEN cDNA 4930474H20 gene	ncRNA	2.0	0.0	0.0	1.0	0.0	0.0
Merged-chr16-31930412-2	chr16	31929912	31930912	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-3439.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134140826-2	chr6	134140320	134141320	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	105120.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	8.5	0.0	6.5	7.0	8.0	0.5
Merged-chr9-85332845-1	chr9	85332345	85333345	+	573.0	f1_balb.idr	Intergenic	Intergenic	-5695.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0.0	0.0	0.5	3.5	5.0	0.5
Merged-chr11-115283314-2	chr11	115282768	115283768	+	573.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178035)	TTS (NM_178035)	-6299.0	NM_007997	14149.0	Mm.4719	NM_007997	ENSMUSG00000018861	Fdxr	AR	ferredoxin reductase	protein-coding	0.5	2.5	0.0	0.0	0.0	0.0
Merged-chr2-164074667-1	chr2	164074167	164075167	+	573.0	f0_balb.idr	intron (NM_021420, intron 1 of 10)	MIR|SINE|MIR	489.0	NM_021420	58231.0	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171394686-1	chr1	171394186	171395186	+	573.0	f1_balb.idr	intron (NM_001005508, intron 1 of 11)	intron (NM_001005508, intron 1 of 11)	5726.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	11.0	8.0	12.0	10.5	13.0	11.5
Merged-chr4-156238050-2	chr4	156237550	156238550	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021303, intron 4 of 18)	intron (NM_021303, intron 4 of 18)	2040.0	NM_021303	57741.0	Mm.423051	NM_021303	ENSMUSG00000095567	Noc2l	AA410003|AF155546|NIR	NOC2 like nucleolar associated transcriptional repressor	protein-coding	0.0	7.0	1.5	0.0	4.0	3.0
Merged-chr15-77336567-3	chr15	77336090	77337090	+	573.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29537.0	NM_053104	93686.0	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-109892214-2	chr9	109891714	109892714	+	573.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007658, exon 15 of 15)	exon (NM_007658, exon 15 of 15)	2571.0	NR_106057	102465660.0		NR_106057	ENSMUSG00000098490	Mir7089	Gm27418|mmu-mir-7089	microRNA 7089	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124940311-2	chr6	124939811	124940811	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8923.0	NM_001170341	30853.0	Mm.29737	NM_145385	ENSMUSG00000030120	Mlf2	AI256856|AU018944|C77284	myeloid leukemia factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-17813015-2	chr14	17812515	17813515	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 1 of 9)	L1M5|LINE|L1	152055.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122650074-1	chr6	122649574	122650574	+	573.0	f1_balb.idr	Intergenic	B3|SINE|B2	23650.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	47.0	83.5	62.0	43.0	96.5	44.0
Merged-chr13-113340806-1	chr13	113340306	113341306	+	573.0	f0_balb.idr	Intergenic	Intergenic	131147.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157562578-2	chr2	157562078	157563078	+	573.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291128)	TTS (NM_001291128)	2500.0	NM_180960	18111.0	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-100528623-3	chr9	100528105	100529105	+	573.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010878, intron 1 of 3)	RMER6A|LTR|ERVK	17529.0	NM_010878	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21100701-3	chr9	21100180	21101180	+	573.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8672.0	NR_038081	100568458.0	Mm.196137	NR_038081		Gm38431	Raver1-fdx1l	predicted gene, 38431	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86488625-2	chr6	86488125	86489125	+	573.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040293)	promoter-TSS (NR_040293)	-398.0	NR_040292	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-94695144-1	chr9	94694644	94695644	+	573.0	f1_c57bl6.idr	intron (NM_177909, intron 2 of 15)	intron (NM_177909, intron 2 of 15)	25252.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	12.5	16.5	22.5	6.0	10.5	40.5
Merged-chr14-55520958-2	chr14	55520458	55521458	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271916, intron 3 of 3)	intron (NM_001271916, intron 3 of 3)	3294.0	NM_008736	18185.0	Mm.20422	NM_008736	ENSMUSG00000040632	Nrl	D14H14S46E	neural retina leucine zipper gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133239088-1	chr4	133238588	133239588	+	573.0	f1_c57bl6.idr	Intergenic	Intergenic	-1730.0	NM_016693	53608.0	Mm.36640	NM_016693	ENSMUSG00000028862	Map3k6	Ask2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding	4.5	3.0	3.0	7.0	1.5	2.0
Merged-chr2-132609153-2	chr2	132608653	132609653	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033469, intron 2 of 3)	ORR1E|LTR|ERVL-MaLR	10957.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126697442-2	chr7	126696942	126697942	+	573.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175103)	TTS (NM_175103)	1442.0	NM_175103	66162.0	Mm.358692	NM_175103	ENSMUSG00000047721	Bola2	1110025L05Rik|BolA-2	bolA-like 2 (E. coli)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-83053950-4	chr3	83053482	83054482	+	573.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1556.0	NM_016784	53317.0	Mm.286349	NM_016784	ENSMUSG00000027998	Plrg1	AA958940|C80566|Tango4	pleiotropic regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-85349355-2	chr5	85348855	85349855	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	716228.0	NM_001345902	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12258804-2	chr13	12258304	12259304	+	573.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081128)	promoter-TSS (NM_001081128)	-691.0	NM_001081128	238505.0	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-40691546-2	chr11	40691052	40692052	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199274, intron 1 of 6)	MTC|LTR|ERVL-MaLR	1130.0	NM_134017	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	0.5	1.0	0.0	0.0	1.5	1.0
Merged-chr9-44177268-2	chr9	44176768	44177768	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 2 of 15)	B1_Mus1|SINE|Alu	42610.0	NM_001359530	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120531919-1	chr6	120531419	120532419	+	573.0	f0_balb.idr	promoter-TSS (NM_144815)	promoter-TSS (NM_144815)	-620.0	NM_144815	214932.0	Mm.255322	NM_144815	ENSMUSG00000058979	Hdhd5	A930002G03Rik|Cecr5	haloacid dehalogenase like hydrolase domain containing 5	protein-coding	0.0	10.0	4.5	0.0	5.0	2.0
Merged-chr11-6560144-1	chr11	6559644	6560644	+	573.0	f0_balb.idr	promoter-TSS (NM_001190344)	promoter-TSS (NM_001190344)	-39.0	NM_001190344	216527.0	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98959982-1	chr13	98959482	98960482	+	573.0	f0_c57.idr	Intergenic	Lx|LINE|L1	24583.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	10.0	26.0	23.0	5.5	5.5	12.5
Merged-chr2-128755678-2	chr2	128755178	128756178	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 6 of 18)	intron (NM_008587, intron 6 of 18)	56763.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	2.0	11.0	2.0	1.0	2.5	2.5
Merged-chr15-78327411-2	chr15	78326911	78327911	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358854, intron 2 of 14)	B2_Mm1a|SINE|B2	1421.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-81615462-2	chr17	81614962	81615962	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	122925.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99152526-1	chr7	99152026	99153026	+	573.0	f1_balb.idr	Intergenic	Intergenic	-11382.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	3.5	0.0	0.0	0.0	0.0	1.0
Merged-chr4-8646275-2	chr4	8645778	8646778	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-44128.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	8.5	2.5	3.0	9.5	1.0
Merged-chr7-98971659-1	chr7	98971159	98972159	+	573.0	f1_c57bl6.idr	intron (NM_178635, intron 12 of 14)	intron (NM_178635, intron 12 of 14)	132814.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.0	0.5	0.0	0.0	0.0	0.5
Merged-chr3-22080788-1	chr3	22080288	22081288	+	573.0	f1_balb.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	4136.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106428234-1	chr9	106427734	106428734	+	573.0	f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1177.0	NM_001324533	19944.0	Mm.288696	NM_009082	ENSMUSG00000048758	Rpl29	Rpl43	ribosomal protein L29	protein-coding	10.0	4.5	5.5	10.0	26.0	11.5
Merged-chr13-83524757-2	chr13	83524255	83525255	+	573.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_001347568)	promoter-TSS (NM_001347568)	12.0	NM_001347580	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	2.5	0.0	1.0	1.5	3.0	5.0
Merged-chr2-101782172-1	chr2	101781672	101782672	+	573.0	f0_balb.idr	intron (NM_001355625, intron 1 of 8)	MTD|LTR|ERVL-MaLR	15535.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	75.5	157.5	94.0	75.5	154.5	74.0
Merged-chr5-96159778-2	chr5	96159278	96160278	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144910, intron 1 of 11)	intron (NM_144910, intron 1 of 11)	1769.0	NM_001285511	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	5.0	10.0	9.0	2.0	3.0	18.0
Merged-chr2-181471450-2	chr2	181470950	181471950	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12024.0	NM_028125	72147.0	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78897582-1	chr15	78897082	78898082	+	573.0	f1_balb.idr	Intergenic	Intergenic	-2186.0	NR_133564	20401.0	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	11.5	6.0	0.5	0.0	4.5	6.0
Merged-chr13-60741233-2	chr13	60740733	60741733	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 19 of 26)	MTC|LTR|ERVL-MaLR	45131.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46339916-1	chr17	46339416	46340416	+	573.0	f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-11893.0	NM_170680	224814.0	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117835703-1	chr4	117835203	117836203	+	573.0	f1_balb.idr	intron (NM_008135, intron 1 of 13)	CpG	445.0	NM_008135	14664.0	Mm.244549	NM_008135	ENSMUSG00000028542	Slc6a9	Glyt-1|Glyt1	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	protein-coding	0.0	3.0	3.0	0.0	8.0	0.0
Merged-chr1-88657228-2	chr1	88656728	88657728	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44963.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45023202-1	chr7	45022702	45023702	+	573.0	f1_balb.idr	Intergenic	PB1D10|SINE|Alu	3605.0	NM_001360133	20130.0	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172209601-2	chr1	172209100	172210100	+	573.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009813)	TTS (NM_009813)	-2796.0	NM_011063	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	0.0	8.0	6.0	1.5	0.0	3.5
Merged-chr11-78964656-2	chr11	78964156	78965156	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010708, intron 10 of 10)	intron (NM_010708, intron 10 of 10)	20268.0	NM_001159301	16859.0	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98340164-2	chr11	98339664	98340664	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8242.0	NM_144828	19049.0	Mm.45372	NM_144828	ENSMUSG00000061718	Ppp1r1b	AU040756|DARPP-32|Darpp32	protein phosphatase 1, regulatory (inhibitor) subunit 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-33654153-1	chr8	33653653	33654653	+	573.0	f0_balb.idr	intron (NM_010344, intron 1 of 12)	intron (NM_010344, intron 1 of 12)	915.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	83.5	141.5	150.5	79.0	125.0	143.0
Merged-chr11-103606890-1	chr11	103606390	103607390	+	573.0	f1_balb.idr	intron (NM_001033434, intron 3 of 13)	BGLII_Mus|LTR|ERVK	7849.0	NM_001033434	380730.0	Mm.380214	NM_001033434	ENSMUSG00000034239	Gm884	LRRC37	predicted gene 884	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113270548-2	chr13	113270048	113271048	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60889.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61502233-2	chr9	61501733	61502733	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	129867.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29618377-2	chr6	29617877	29618877	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-8528.0	NM_001347079	320938.0	Mm.276381	NM_177296	ENSMUSG00000012535	Tnpo3	5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133	transportin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153342513-2	chr2	153342013	153343013	+	573.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040318, exon 2 of 2)	non-coding (NR_040318, exon 2 of 2)	3297.0	NR_040318	72326.0	Mm.400102	NR_040318	ENSMUSG00000073236	2500004C02Rik	-	RIKEN cDNA 2500004C02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84703538-1	chr3	84703038	84704038	+	573.0	f0_balb.idr	3' UTR (NM_177260, exon 7 of 7)	3' UTR (NM_177260, exon 7 of 7)	37346.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-40023178-1	chr8	40022678	40023678	+	573.0	f1_balb.idr	Intergenic	Intergenic	263775.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	17.5	14.5	19.5	12.0	9.5	3.5
Merged-chr18-76325006-1	chr18	76324506	76325506	+	573.0	f1_balb.idr	Intergenic	Intergenic	62561.0	NM_001311070	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	4.0	5.0	0.0	11.0	1.5	1.0
Merged-chr18-20704302-1	chr18	20703802	20704802	+	573.0	f0_balb.idr	intron (NM_019737, intron 4 of 8)	intron (NM_019737, intron 4 of 8)	-39042.0	NR_155534	102633478.0		NR_155534	ENSMUSG00000085595	Gm16090	-	predicted gene 16090	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-19869009-2	chr4	19868509	19869509	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	50282.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-149462438-2	chr3	149461938	149462938	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	187701.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71159981-1	chr17	71159481	71160481	+	573.0	f1_c57bl6.idr	Intergenic	Intergenic	-23551.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.0	3.0	1.5	16.5	3.0	2.0
Merged-chr3-137950019-1	chr3	137949519	137950519	+	573.0	f0_balb.idr	intron (NM_011932, intron 3 of 8)	RSINE1|SINE|B4	31464.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104431111-2	chr3	104430611	104431611	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80807.0	NM_001025067	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126500973-2	chr8	126500473	126501473	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25908.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0.0	5.5	1.0	0.0	5.5	2.0
Merged-chr1-62705591-2	chr1	62705091	62706091	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 1 of 16)	intron (NM_001077404, intron 1 of 16)	2274.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-90864057-1	chr6	90863557	90864557	+	573.0	f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-53934.0	NM_001134384	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88686266-1	chr3	88685766	88686766	+	573.0	f0_c57.idr	intron (NR_151827, intron 1 of 13)	CpG	479.0	NR_151827	74200.0	Mm.251800	NM_028814	ENSMUSG00000028060	2810403A07Rik	A430106P18Rik|AI256352|AI451678|Blom7|Khdc4|Kiaa0907	RIKEN cDNA 2810403A07 gene	protein-coding	31.5	96.5	93.0	44.5	100.5	76.0
Merged-chr15-12800394-2	chr15	12799894	12800894	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	24263.0	NM_029998	77877.0	Mm.207311	NM_029998	ENSMUSG00000022195	6030458C11Rik	-	RIKEN cDNA 6030458C11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85088550-1	chr1	85088050	85089050	+	573.0	f1_balb.idr	3' UTR (NM_213615, exon 7 of 7)	3' UTR (NM_213615, exon 7 of 7)	21303.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6973967-2	chr19	6973467	6974467	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1081.0	NM_008889	18938.0	Mm.140	NM_008889	ENSMUSG00000056612	Ppp1r14b	AOM172|PHI-1|PLCB3N|Png	protein phosphatase 1, regulatory (inhibitor) subunit 14B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-11129295-3	chr17	11128795	11129795	+	573.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317726, intron 2 of 6)	intron (NM_001317726, intron 2 of 6)	288936.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr9-114744138-1	chr9	114743638	114744638	+	573.0	f1_c57bl6.idr	intron (NM_026036, intron 3 of 3)	intron (NM_026036, intron 3 of 3)	12935.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	6.0	34.5	8.5	4.5	3.0	5.5
Merged-chr17-8315160-1	chr17	8314660	8315660	+	573.0	f1_c57bl6.idr	intron (NM_134114, intron 1 of 7)	MER21B|LTR|ERVL	-4042.0	NR_073374	75060.0	Mm.426530	NR_073374	ENSMUSG00000087478	4930506C21Rik	-	RIKEN cDNA 4930506C21 gene	ncRNA	0.0	10.0	4.5	2.0	14.5	3.5
Merged-chr11-23697071-2	chr11	23696571	23697571	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033654, intron 4 of 17)	intron (NM_001033654, intron 4 of 17)	31095.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141623715-2	chr7	141623215	141624215	+	573.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007459, exon 15 of 22)	exon (NM_007459, exon 15 of 22)	3014.0	NR_106030	102466798.0		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86578049-1	chr11	86577549	86578549	+	573.0	f0_c57.idr	Intergenic	Intergenic	6109.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23281334-2	chr16	23280834	23281834	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-9136.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-139841498-2	chr2	139840998	139841998	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159640, intron 13 of 13)	intron (NM_001159640, intron 13 of 13)	163320.0	NM_001276489	319909.0	Mm.41113	NM_001126490	ENSMUSG00000074766	Ism1	5430433G21Rik|Ism	isthmin 1, angiogenesis inhibitor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129882218-2	chr4	129881718	129882718	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24008.0	NR_045190	319894.0	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	42.0	74.5	71.5	18.5	37.0	52.5
Merged-chr17-34660611-2	chr17	34660117	34661117	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9918.0	NM_031176	81877.0	Mm.290527	NM_031176	ENSMUSG00000033327	Tnxb	Tn-mhc|Tnx	tenascin XB	protein-coding	0.0	1.5	0.5	0.0	1.5	0.0
Merged-chr4-32347381-2	chr4	32346881	32347881	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	-70054.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27601642-2	chr3	27601142	27602142	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 4 of 26)	intron (NM_001356953, intron 4 of 26)	-16647.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73053266-1	chr2	73052766	73053766	+	573.0	f0_balb.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-72820.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32722464-1	chr5	32721964	32722964	+	573.0	f1_balb.idr	Intergenic	Intergenic	23878.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	2.0	4.0	4.0	1.0	2.5	1.0
Merged-chr15-5244793-1	chr15	5244293	5245293	+	573.0	f0_balb.idr	promoter-TSS (NM_008965)	promoter-TSS (NM_008965)	-606.0	NM_008965	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184791232-1	chr1	184790732	184791732	+	573.0	f1_balb.idr	intron (NM_001290273, intron 6 of 6)	intron (NM_001290273, intron 6 of 6)	20068.0	NM_001290273	66112.0	Mm.272457	NM_001081361	ENSMUSG00000026621	Marc1	1300013F15Rik|Mosc1	mitochondrial amidoxime reducing component 1	protein-coding	0.0	0.0	5.5	7.0	0.0	0.5
Merged-chr12-36207720-2	chr12	36207220	36208220	+	573.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027699)	TTS (NM_027699)	10498.0	NM_027699	71156.0	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr15-100036551-2	chr15	100036051	100037051	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2113.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-24511296-2	chr9	24510796	24511796	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8156.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84624876-2	chr12	84624376	84625376	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7410.0	NM_008992	19300.0	Mm.229109	NM_008992	ENSMUSG00000021240	Abcd4	P69r|P70R|Pxmp1l	ATP-binding cassette, sub-family D (ALD), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173349095-2	chr2	173348595	173349595	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-72562.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62685663-2	chr18	62685163	62686163	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168423, intron 1 of 4)	intron (NM_001168423, intron 1 of 4)	55724.0	NM_001168423	100038417.0	Mm.387557	NM_001168423	ENSMUSG00000073551	Spink13	Gm10534|Spink5l3	serine peptidase inhibitor, Kazal type 13	protein-coding	5.5	0.0	0.0	6.5	0.0	0.0
Merged-chr2-152687637-1	chr2	152687137	152688137	+	573.0	f1_balb.idr	TTS (NM_001159552)	TTS (NM_001159552)	489.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	5.0	13.5	3.5	0.0	1.0	1.0
Merged-chr6-24708290-1	chr6	24707790	24708790	+	573.0	f0_balb.idr	Intergenic	Intergenic	-24955.0	NM_028920	74409.0	Mm.87331	NM_028920	ENSMUSG00000029679	Hyal6	4932701A20Rik|Hyal-ps1|Hyalp1	hyaluronoglucosaminidase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91877597-2	chr16	91877097	91878097	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	54033.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-89089797-1	chr11	89089297	89090297	+	573.0	f0_c57.idr	intron (NM_001033266, intron 3 of 3)	MLTR14|LTR|ERV1	15956.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40014813-1	chr4	40014313	40015313	+	573.0	f0_balb.idr	Intergenic	Intergenic	-128452.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50027433-2	chr17	50026933	50027933	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 7 of 9)	RMER17D|LTR|ERVK	163064.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-118066746-2	chr6	118066246	118067246	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362103, intron 1 of 12)	intron (NM_001362103, intron 1 of 12)	361.0	NM_001362103	70727.0	Mm.87660	NM_027526	ENSMUSG00000030134	Rasgef1a	6330404M18Rik|AI835194	RasGEF domain family, member 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102810005-1	chr2	102809505	102810505	+	573.0	f0_balb.idr	Intergenic	HAL1|LINE|L1	-63245.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	7.5	16.0	25.5	12.5	20.5	10.0
Merged-chr2-102825045-1	chr2	102824545	102825545	+	573.0	f0_c57.idr	intron (NM_001039150, intron 11 of 13)	MTD|LTR|ERVL-MaLR	76620.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	1.0	11.5	9.0	0.5	1.5	5.0
Merged-chr8-94311469-2	chr8	94310969	94311969	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357268, intron 18 of 20)	intron (NM_001357268, intron 18 of 20)	-12842.0	NR_029552	723956.0		NR_029552	ENSMUSG00000065512	Mir138-2	Mirn138-2|mir-138-2	microRNA 138-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118602307-2	chr9	118601807	118602807	+	572.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-4402.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-28479370-3	chr2	28478876	28479876	+	572.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	11310.0	NM_001166031	118451.0	Mm.294951	NM_080452	ENSMUSG00000035772	Mrps2	1500019M10Rik	mitochondrial ribosomal protein S2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-22744427-2	chr10	22743927	22744927	+	572.791626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12980.0	NM_011603	237336.0	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98399029-2	chr11	98398529	98399529	+	572.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033537, intron 1 of 7)	intron (NM_001033537, intron 1 of 7)	1461.0	NM_001033537	320655.0	Mm.86519	NM_001033537	ENSMUSG00000038208	Pgap3	CAB2|D430035D22Rik|Perld1	post-GPI attachment to proteins 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70546377-1	chr14	70545877	70546877	+	572.666687	f1_c57bl6.idr	intron (NM_180588, intron 1 of 7)	intron (NM_180588, intron 1 of 7)	1126.0	NM_180588	72549.0	Mm.46742	NM_180588	ENSMUSG00000033589	Reep4	2700029E10Rik	receptor accessory protein 4	protein-coding	3.5	6.0	6.5	4.0	9.5	6.0
Merged-chr4-34270053-3	chr4	34269517	34270517	+	572.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-219950.0	NM_026293	67652.0	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-20955306-3	chr5	20954822	20955822	+	572.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030699, exon 1 of 1)	non-coding (NR_030699, exon 1 of 1)	-3500.0	NM_001080977	242860.0	Mm.254286	NM_001080977	ENSMUSG00000039968	Rsbn1l	8430412F05Rik|AI447441|C330002G24Rik	round spermatid basic protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127575705-2	chr10	127575187	127576187	+	572.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 24 of 88)	intron (NM_008512, intron 24 of 88)	-41128.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	5.0	4.0	12.0	1.5	0.0	1.0
Merged-chr5-146940356-2	chr5	146939856	146940856	+	572.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8301.0	NM_025652	66596.0	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-72831981-2	chr12	72831481	72832481	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70770.0	NM_008910	19042.0	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	0.0	1.0	0.0	0.0	0.0	3.5
Merged-chr18-75214754-2	chr18	75214288	75215288	+	572.5	f0_balb.idr|f1_balb.idr	intron (NM_027727, intron 14 of 16)	intron (NM_027727, intron 14 of 16)	82529.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	0.0	0.0	2.0	2.0	0.0	1.5
Merged-chr2-84246704-1	chr2	84246204	84247204	+	572.5	f0_c57.idr	Intergenic	Lx9|LINE|L1	178562.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	2.5	11.0	10.0	10.0	1.5	8.0
Merged-chr16-22443323-2	chr16	22442823	22443823	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-3753.0	NM_023794	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-141797010-2	chr6	141796510	141797510	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59210.0	NM_030687	28250.0	Mm.255586	NM_030687	ENSMUSG00000030237	Slco1a4	AI785519|Oatp1a4|Oatp2|Slc21a5	solute carrier organic anion transporter family, member 1a4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-109060327-1	chr9	109059827	109060827	+	572.5	f1_balb.idr	promoter-TSS (NM_011637)	promoter-TSS (NM_011637)	-604.0	NM_011637	22040.0	Mm.439964	NM_011637	ENSMUSG00000049734	Trex1	AU041952	three prime repair exonuclease 1	protein-coding	3.5	4.0	4.5	2.0	4.0	2.0
Merged-chr13-34040338-2	chr13	34039838	34040838	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026512, intron 1 of 6)	MTC|LTR|ERVL-MaLR	2697.0	NM_026512	68021.0	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12701920-2	chr19	12701420	12702420	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029550, intron 1 of 5)	Lx5|LINE|L1	6130.0	NM_029550	64697.0	Mm.218561	NM_029550	ENSMUSG00000024694	Keg1	0610008P16Rik|AI316519|GS4059	kidney expressed gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-41707431-2	chr3	41706931	41707931	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_155540, intron 8 of 20)	L1M3d|LINE|L1	35083.0	NR_155540	67161.0	Mm.331001	NM_001081411	ENSMUSG00000059834	Sclt1	2610207F23Rik|4931421F20Rik|CAGGS-SB10|Tg(ACTB-sb10)1Dla|Tg(CAG-sb10)1Dla	sodium channel and clathrin linker 1	protein-coding	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70790979-2	chr9	70790479	70791479	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111997.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32735215-2	chr9	32734715	32735715	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038642, intron 5 of 6)	intron (NM_001038642, intron 5 of 6)	39173.0	NM_001038642	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-78374502-2	chr16	78373991	78374991	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001297747, intron 1 of 4)	L1MB8|LINE|L1	2266.0	NR_002700	654432.0	Mm.458574	NR_002700	ENSMUSG00000044645	Gm7334	EG654432	B-cell translocation gene 3 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97119915-2	chr11	97119415	97120415	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4584.0	NM_019507	57765.0	Mm.94519	NM_019507	ENSMUSG00000001444	Tbx21	TBT1|Tbet|Tblym	T-box 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-79663175-2	chr17	79662675	79663675	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_201361, intron 5 of 10)	intron (NM_201361, intron 5 of 10)	48275.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57016252-2	chr17	57015752	57016752	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4964.0	NM_133801	98053.0	Mm.24632	NM_133801	ENSMUSG00000002658	Gtf2f1	2810405L04Rik|C76800|RAP74	general transcription factor IIF, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-94113575-2	chr17	94113075	94114075	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	636444.0	NM_001357136	76781.0	Mm.139146	NM_176917	ENSMUSG00000055660	Mettl4	2410198H06Rik|A730091E08Rik|AV296509|HsT661	methyltransferase like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-110466495-2	chr8	110465995	110466995	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172916, intron 24 of 86)	intron (NM_172916, intron 24 of 86)	35861.0	NR_105058	100861869.0	Mm.84499	NR_105058		Gm21283	-	predicted gene, 21283	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-9860078-2	chr1	9859578	9860578	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037759, intron 1 of 16)	ERVL-B4-int|LTR|ERVL	11797.0	NM_001037759	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-10288169-2	chr2	10287669	10288669	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82282.0	NM_001198808	353282.0	Mm.329991	NM_177386	ENSMUSG00000061186	Sfmbt2	D2Wsu23e|D330030P06Rik	Scm-like with four mbt domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40297041-2	chr4	40296541	40297541	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-16191.0	NR_040663	75819.0	Mm.399244	NR_040663	ENSMUSG00000087137	4930509K18Rik	-	RIKEN cDNA 4930509K18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-48771901-2	chr11	48771401	48772401	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-28459.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166047765-2	chr2	166047265	166048265	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 3 of 22)	intron (NM_008679, intron 3 of 22)	55128.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.0	0.0	6.5	0.0	0.0	0.0
Merged-chr19-29373786-2	chr19	29373286	29374286	+	572.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_021893, exon 3 of 7)	exon (NM_021893, exon 3 of 7)	6348.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75160831-2	chr11	75160331	75161331	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 18 of 18)	intron (NM_001002764, intron 18 of 18)	7321.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	5.0	3.5	4.5	2.5	4.0	2.0
Merged-chr3-86317798-1	chr3	86317298	86318298	+	572.5	f0_balb.idr	intron (NM_001077687, intron 14 of 50)	intron (NM_001077687, intron 14 of 50)	93108.0	NM_001077688	80877.0	Mm.439825	NM_030695	ENSMUSG00000028080	Lrba	C80285|D3Ertd775e|Lab300|Lba	LPS-responsive beige-like anchor	protein-coding	0.0	17.0	0.0	6.5	16.0	1.0
Merged-chr15-100911113-2	chr15	100910613	100911613	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077499, intron 1 of 26)	RSINE1|SINE|B4	-25158.0	NM_011323	20273.0	Mm.385012	NM_011323	ENSMUSG00000023033	Scn8a	AI853486|C630029C19Rik|NaCh6|Nav1.6|dmu|med|mnd-2|mnd2|nmf2|nmf335|nmf58|nur14|seal	sodium channel, voltage-gated, type VIII, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117903245-2	chr10	117902745	117903745	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-22214.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	1.0	0.0	1.0	2.5	1.0	1.0
Merged-chr2-52987301-2	chr2	52986801	52987801	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	129433.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123818827-2	chr9	123818327	123819327	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110253, intron 14 of 17)	intron (NM_001110253, intron 14 of 17)	12350.0	NM_030712	80901.0	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-41141290-2	chr9	41140784	41141784	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	(CA)n|Simple_repeat|Simple_repeat	16778.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	10.0	18.0	14.5	5.0	6.0	9.0
Merged-chr12-40217240-2	chr12	40216740	40217740	+	572.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013562, exon 3 of 12)	exon (NM_013562, exon 3 of 12)	5571.0	NR_035459	100316693.0		NR_035459	ENSMUSG00000089371	Mir1938	mir-1938|mmu-mir-1938	microRNA 1938	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108818656-2	chr8	108818156	108819156	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 3 of 9)	intron (NM_007496, intron 3 of 9)	104012.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-106441031-2	chr6	106440526	106441526	+	572.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001109749, intron 8 of 25)	intron (NM_001109749, intron 8 of 25)	308011.0	NM_008370	16192.0	Mm.3448	NM_008370	ENSMUSG00000005364	Il5ra	CD125|CDw125|Il5r	interleukin 5 receptor, alpha	protein-coding	7.5	5.0	12.0	0.5	15.5	3.0
Merged-chr10-60396997-2	chr10	60396497	60397497	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 28 of 68)	RMER15-int|LTR|ERVL	-2729.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-44661718-2	chr18	44661218	44662218	+	572.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_026853)	promoter-TSS (NR_026853)	53.0	NR_026853	626275.0	Mm.427116	NR_026853	ENSMUSG00000097610	A930012L18Rik	-	RIKEN cDNA A930012L18 gene	ncRNA	1.5	0.0	2.5	1.5	0.0	0.0
Merged-chr19-34490404-2	chr19	34489904	34490904	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-15269.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127506447-2	chr10	127505947	127506947	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359751, intron 6 of 11)	ID_B1|SINE|B4	4730.0	NM_177707	237611.0	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118881740-2	chr9	118881240	118882240	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 12 of 13)	intron (NM_001113514, intron 12 of 13)	-44796.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36152724-2	chr17	36152224	36153224	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033517, intron 1 of 3)	intron (NR_033517, intron 1 of 3)	7706.0	NR_033517	675325.0	Mm.75890	NR_033517	ENSMUSG00000038311	2410017I17Rik	-	RIKEN cDNA 2410017I17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96267314-2	chr3	96266814	96267814	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1340.0	NM_178215	319154.0	Mm.383293	NM_178215	ENSMUSG00000074403	Hist2h3b	H3-615|H3-616	histone cluster 2, H3b	protein-coding	10.0	14.5	6.0	4.0	6.5	7.0
Merged-chr14-54433172-2	chr14	54432672	54433672	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008608, intron 1 of 9)	intron (NM_008608, intron 1 of 9)	1574.0	NM_008608	17387.0	Mm.280175	NM_008608	ENSMUSG00000000957	Mmp14	AI325305|MMP-X1|MT-MMP-1|MT1-MMP|sabe	matrix metallopeptidase 14 (membrane-inserted)	protein-coding	2.0	9.0	5.5	2.0	5.5	3.5
Merged-chr6-140548466-2	chr6	140547966	140548966	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144920, intron 11 of 30)	intron (NM_144920, intron 11 of 30)	-74197.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58502732-1	chr16	58502232	58503232	+	572.5	f0_c57.idr	intron (NM_001357433, intron 2 of 10)	B1F|SINE|Alu	20694.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-72405516-2	chr1	72405016	72406016	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	98095.0	NM_001357519	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129914422-2	chr4	129913922	129914922	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8196.0	NR_045190	319894.0	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	15.5	12.5	13.5	7.0	9.5	6.5
Merged-chr5-138997275-2	chr5	138996775	138997775	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2322.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76703119-2	chr15	76702619	76703619	+	572.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_058214)	TTS (NM_058214)	1577.0	NM_027122	69572.0	Mm.34920	NM_027122	ENSMUSG00000019080	Mfsd3	2310010G13Rik	major facilitator superfamily domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94697871-2	chr16	94697371	94698371	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86452.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81342936-2	chr7	81342436	81343436	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009092, intron 4 of 4)	intron (NM_009092, intron 4 of 4)	2298.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27273434-2	chr3	27272934	27273934	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR40|LTR|ERVK	-43643.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166085965-2	chr2	166085465	166086465	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252579, intron 7 of 20)	intron (NM_001252579, intron 7 of 20)	69320.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.0	2.0	0.0	0.5	0.0	3.5
Merged-chr6-15025526-2	chr6	15025026	15026026	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053242, intron 2 of 18)	Lx3A|LINE|L1	124177.0	NM_053242	114142.0	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34555048-2	chr6	34554548	34555548	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43456.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	0.0	2.5	0.0	10.0	4.0	4.0
Merged-chr11-117234378-2	chr11	117233878	117234878	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 2 of 11)	intron (NM_001113486, intron 2 of 11)	-31868.0	NM_001113487	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116828692-2	chr11	116828192	116829192	+	572.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026280)	promoter-TSS (NM_026280)	-565.0	NM_001347633	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	3.0	1.5	1.5	3.0	1.5	1.5
Merged-chr18-12153942-2	chr18	12153442	12154442	+	572.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_024182, exon 12 of 13)	exon (NM_024182, exon 12 of 13)	-14788.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	0.0	1.0	0.5	0.0	1.0	0.5
Merged-chr15-64210655-2	chr15	64210155	64211155	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	102018.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69987980-2	chr8	69987480	69988480	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 1 of 12)	intron (NM_001286450, intron 1 of 12)	8404.0	NM_001286450	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	14.0	12.0	2.5	5.0	6.5	2.5
Merged-chr11-118134123-2	chr11	118133623	118134623	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4904.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4929020-2	chr19	4928520	4929520	+	572.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133803)	promoter-TSS (NM_133803)	-733.0	NM_133803	75221.0	Mm.234769	NM_133803	ENSMUSG00000063904	Dpp3	4930533O14Rik|C86324|DPP III	dipeptidylpeptidase 3	protein-coding	0.0	7.0	0.0	0.0	3.0	0.5
Merged-chr18-84008640-2	chr18	84008140	84009140	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	77922.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-140072498-2	chr1	140071998	140072998	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	110913.0	NM_009888	12628.0	Mm.8655	NM_009888	ENSMUSG00000026365	Cfh	Mud-1|NOM|Sas-1|Sas1	complement component factor h	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-91052750-2	chr8	91052250	91053250	+	572.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001310530, exon 38 of 38)	3' UTR (NM_001310530, exon 38 of 38)	-17307.0	NM_001282001	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	0.0	3.5	1.0	0.0	1.0	0.0
Merged-chr2-104589427-2	chr2	104588927	104589927	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1057.0	NM_177253	228410.0	Mm.259876	NM_145529	ENSMUSG00000027176	Cstf3	4732468G05Rik|C79532|CstF-77	cleavage stimulation factor, 3' pre-RNA, subunit 3	protein-coding	1.5	6.0	4.5	9.0	8.5	3.0
Merged-chr14-23899720-2	chr14	23899220	23900220	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253364, intron 1 of 27)	intron (NM_001253364, intron 1 of 27)	104485.0	NM_001253375	16531.0	Mm.343607	NM_010610	ENSMUSG00000063142	Kcnma1	5730414M22Rik|BKCa|MaxiK|Slo|Slo1|mSlo|mSlo1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10945521-2	chr19	10945021	10946021	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023731, intron 1 of 3)	Lx|LINE|L1	3745.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147609867-2	chr4	147609367	147610367	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32641.0	NM_145078	112422.0	Mm.327194	NM_145078	ENSMUSG00000066000	Zfp979	2610305D13Rik|Ssm1b	zinc finger protein 979	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22121864-2	chr16	22121364	22122364	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	41435.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117418971-2	chr5	117418471	117419471	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	4969.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	1.0	5.0	3.5	0.0	5.0	4.5
Merged-chr14-121428770-2	chr14	121428270	121429270	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-49540.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90176481-2	chr16	90175981	90176981	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34244.0	NR_033476	100038709.0	Mm.484070	NR_033476		Gm10789	-	predicted gene 10789	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66885410-2	chr9	66884910	66885910	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	34295.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53800723-1	chr19	53800223	53801223	+	572.5	f0_c57.idr	intron (NM_001170847, intron 1 of 13)	intron (NM_001170847, intron 1 of 13)	-91508.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73914830-1	chr12	73914330	73915330	+	572.5	f0_balb.idr	intron (NM_010431, intron 1 of 14)	intron (NM_010431, intron 1 of 14)	6963.0	NM_001313919	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36465666-2	chr18	36465166	36466166	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-11171.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-10952781-2	chr8	10952281	10953281	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24324.0	NR_135302	665306.0	Mm.358758	NR_030715	ENSMUSG00000038917	3930402G23Rik	-	RIKEN cDNA 3930402G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32178915-2	chr19	32178415	32179415	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	32098.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79884013-2	chr12	79883513	79884513	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	40720.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-55891415-2	chr17	55890914	55891914	+	572.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145490)	promoter-TSS (NM_145490)	-679.0	NM_001360136	224893.0	Mm.294853	NM_145490	ENSMUSG00000003198	Zfp959	-	zinc finger protein 959	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-62045766-2	chr16	62045252	62046252	+	572.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	740964.0	NM_178925	106338.0	Mm.26321	NM_178925	ENSMUSG00000050312	Nsun3	6720484A09Rik|AU022521	NOL1/NOP2/Sun domain family member 3	protein-coding	1.5	1.0	0.0	0.0	2.0	1.0
Merged-chr6-72091105-2	chr6	72090609	72091609	+	572.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6499.0	NM_001035228	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-89125516-2	chr2	89125016	89126016	+	572.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001011860, exon 1 of 1)	exon (NM_001011860, exon 1 of 1)	213.0	NM_001011860	258177.0	Mm.377369	NM_001011860	ENSMUSG00000075101	Olfr1222	MOR233-14	olfactory receptor 1222	protein-coding	0.0	0.0	1.0	1.0	0.0	2.5
Merged-chr15-85337408-2	chr15	85336908	85337908	+	572.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_016843, intron 1 of 11)	intron (NM_016843, intron 1 of 11)	1027.0	NM_016843	54138.0	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152519363-2	chr1	152518863	152519863	+	572.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 17 of 17)	intron (NM_016846, intron 17 of 17)	105854.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11487417-2	chr8	11486917	11487917	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-8918.0	NM_011227	19332.0	Mm.37632	NM_011227	ENSMUSG00000031504	Rab20	AA536966|D8Ertd350e	RAB20, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30521284-2	chr14	30520784	30521784	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133761, intron 7 of 9)	PB1D11|SINE|Alu	-27847.0	NM_009388	21881.0	Mm.290692	NM_009388	ENSMUSG00000021957	Tkt	p68	transketolase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5991362-1	chr11	5990862	5991862	+	572.0	f1_balb.idr	intron (NM_001174054, intron 6 of 20)	intron (NM_001174054, intron 6 of 20)	35604.0	NM_019661	56418.0	Mm.294821	NM_019661	ENSMUSG00000002741	Ykt6	0610042I15Rik|1810013M05Rik|AW105923	YKT6 v-SNARE homolog (S. cerevisiae)	protein-coding	5.0	4.5	9.0	2.0	0.0	1.5
Merged-chr3-145116083-2	chr3	145115583	145116583	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2506.0	NM_001162539	52184.0	Mm.259105	NM_025714	ENSMUSG00000028256	Odf2l	4733401D09Rik|9630045K08Rik|D3Ertd250e	outer dense fiber of sperm tails 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94126989-2	chr11	94126489	94127489	+	572.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001199203)	TTS (NM_001199203)	82784.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-100433076-2	chr9	100432576	100433576	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	53397.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	0.0	2.0	10.5	2.0	3.0	3.0
Merged-chr14-13001289-1	chr14	13000789	13001789	+	572.0	f0_balb.idr	Intergenic	Intergenic	-178210.0	NM_001359919	27062.0	Mm.260881	NM_012061	ENSMUSG00000054423	Cadps	AU067781|CAPS|CAPS1|mKIAA1121	Ca2+-dependent secretion activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80751101-1	chr7	80750601	80751601	+	572.0	f1_c57bl6.idr	intron (NM_016721, intron 14 of 37)	B4A|SINE|B4	52230.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.0	27.5	5.0	5.0	29.0	8.5
Merged-chr17-48412304-2	chr17	48411804	48412804	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207219, intron 3 of 5)	B1_Mur1|SINE|Alu	1854.0	NM_001357904	106821.0	Mm.203943	NM_207219	ENSMUSG00000040771	Oard1	AI314976|AW558560	O-acyl-ADP-ribose deacylase 1	protein-coding	3.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103814193-2	chr14	103813693	103814693	+	572.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007904)	TTS (NM_007904)	29508.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119421371-1	chr4	119420871	119421871	+	572.0	f1_c57bl6.idr	intron (NM_026494, intron 2 of 2)	L2c|LINE|L2	1049.0	NM_001355214	106564.0	Mm.27245	NM_026494	ENSMUSG00000028636	Ppcs	6330579B17Rik|AI413471|AI790434	phosphopantothenoylcysteine synthetase	protein-coding	5.0	0.0	0.0	3.5	2.5	3.5
Merged-chr1-132982932-1	chr1	132982432	132983432	+	572.0	f0_balb.idr	Intergenic	Intergenic	42484.0	NR_126506	17248.0	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr1-23435169-1	chr1	23434669	23435669	+	572.0	f1_c57bl6.idr	Intergenic	RMER17C-int|LTR|ERVK	-51994.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	4.5	15.0	13.5	0.0	9.0	10.0
Merged-chr6-67056747-1	chr6	67056247	67057247	+	572.0	f0_balb.idr	intron (NR_040278, intron 1 of 6)	intron (NR_040278, intron 1 of 6)	-19340.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-64692972-2	chr8	64692459	64693459	+	572.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013494, exon 1 of 9)	5' UTR (NM_013494, exon 1 of 9)	150.0	NM_013494	12876.0	Mm.31395	NM_013494	ENSMUSG00000037852	Cpe	CPH|Cph-1|Cph1|NF-alpha1|R74677|fat	carboxypeptidase E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32581325-1	chr11	32580825	32581825	+	572.0	f1_c57bl6.idr	intron (NM_009288, intron 4 of 18)	intron (NM_009288, intron 4 of 18)	48059.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	6.0	14.5	5.5	4.5	15.0	7.0
Merged-chr4-129459686-1	chr4	129459186	129460186	+	572.0	f1_balb.idr	Intergenic	LTRIS_Mus|LTR|ERV1	-1993.0	NM_133889	100383.0	Mm.17918	NM_133889	ENSMUSG00000040859	Bsdc1	1110063F24Rik|AW011758	BSD domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80011054-2	chr7	80010554	80011554	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-13760.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.0	2.5	1.0	2.5	0.0	0.0
Merged-chr18-43515250-1	chr18	43514750	43515750	+	572.0	f0_balb.idr	Intergenic	Intergenic	-76964.0	NM_001291455	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55953911-2	chr4	55953411	55954411	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-421436.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-56489353-1	chr6	56488853	56489853	+	572.0	f0_balb.idr	Intergenic	Intergenic	-119719.0	NM_001159955	18575.0	Mm.5145	NM_011054	ENSMUSG00000004347	Pde1c	-	phosphodiesterase 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-39430715-2	chr16	39430215	39431215	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-241765.0	NR_153800	102640746.0		NR_153800		Gm36742	-	predicted gene, 36742	ncRNA	8.5	18.5	8.5	0.0	1.0	10.5
Merged-chr17-15560102-2	chr17	15559596	15560596	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144809, intron 3 of 9)	B2_Mm1t|SINE|B2	3227.0	NM_144809	213389.0	Mm.215162	NM_144809	ENSMUSG00000051977	Prdm9	BC012016|Dsbc1|G1-419-29|Meisetz|PRDM9-B|Rcr1|repro7	PR domain containing 9	protein-coding	1.5	0.0	0.0	1.5	0.0	0.0
Merged-chr19-46350503-2	chr19	46350003	46351003	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1515.0	NR_040418	75579.0	Mm.436708	NR_040418		2310034G01Rik	-	RIKEN cDNA 2310034G01 gene	ncRNA	0.0	2.5	0.5	0.0	2.5	0.0
Merged-chr19-25171497-2	chr19	25170997	25171997	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 34 of 47)	intron (NM_028785, intron 34 of 47)	-65478.0	NM_181404	107351.0	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-24634034-2	chr12	24633567	24634567	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17304.0	NM_178357	194655.0	Mm.9616	NM_178357	ENSMUSG00000020653	Klf11	9830142A17|D12Ertd427e|Tieg2|Tieg2b|Tieg3	Kruppel-like factor 11	protein-coding	0.0	0.0	0.0	0.0	6.5	0.0
Merged-chr14-63146116-1	chr14	63145616	63146616	+	572.0	f0_balb.idr	TTS (NM_007798)	TTS (NM_007798)	23654.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120358504-2	chr11	120358004	120359004	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3030.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38233166-1	chr18	38232666	38233666	+	572.0	f0_c57.idr	Intergenic	Intergenic	17032.0	NR_015475	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	7.0	16.0	9.5	7.0	7.0	8.5
Merged-chr17-24469181-1	chr17	24468681	24469681	+	572.0	f1_balb.idr	Intergenic	B2_Mm1a|SINE|B2	-1292.0	NM_025954	67078.0	Mm.28541	NM_025954	ENSMUSG00000043445	Pgp	1700012G19Rik|AI481330|AUM|G3PP	phosphoglycolate phosphatase	protein-coding	7.0	23.5	16.0	7.0	24.5	15.5
Merged-chr18-34380175-1	chr18	34379675	34380675	+	572.0	f0_balb.idr	Intergenic	Intergenic	-6760.0	NM_007874	13476.0	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-8135341-1	chr14	8134841	8135841	+	572.0	f0_balb.idr	intron (NM_001360314, intron 4 of 19)	intron (NM_001360314, intron 4 of 19)	37130.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-72835123-1	chr9	72834623	72835623	+	572.0	f1_c57bl6.idr	intron (NM_175485, intron 2 of 19)	intron (NM_175485, intron 2 of 19)	27849.0	NM_175485	235472.0	Mm.31696	NM_175485	ENSMUSG00000036030	Prtg	A230098A12Rik|Igdcc5	protogenin	protein-coding	3.5	9.5	5.5	3.0	2.0	3.0
Merged-chr10-61342126-2	chr10	61341626	61342626	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013753, intron 15 of 19)	intron (NM_013753, intron 15 of 19)	41397.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29190579-1	chr11	29190079	29191079	+	572.0	f0_balb.idr	intron (NM_134034, intron 4 of 15)	URR1A|DNA|hAT-Charlie	17672.0	NM_134034	104570.0	Mm.276386	NM_134034	ENSMUSG00000020463	Ppp4r3b	AW011752|AW557776|Smek2|mKIAA1387	protein phosphatase 4 regulatory subunit 3B	protein-coding	2.5	3.5	2.5	1.5	12.0	4.5
Merged-chr7-104403051-2	chr7	104402551	104403551	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43074.0	NM_001357467	20128.0	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32600588-1	chr11	32600088	32601088	+	572.0	f1_balb.idr	intron (NM_009288, intron 9 of 18)	intron (NM_009288, intron 9 of 18)	-41967.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0.0	1.0	0.0	0.0	1.5	2.0
Merged-chr1-88205671-2	chr1	88205171	88206171	+	572.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008299)	promoter-TSS (NM_008299)	77.0	NM_008299	15504.0	Mm.439983	NM_008299	ENSMUSG00000081984	Dnajb3	Hsj3|MSJ-1|Msj1	DnaJ heat shock protein family (Hsp40) member B3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4581674-2	chr7	4581174	4582174	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207270, intron 5 of 19)	intron (NM_207270, intron 5 of 19)	22367.0	NM_207270	545902.0	Mm.188925	NM_207270	ENSMUSG00000035429	Ptprh	R-PTP-H|sap-1	protein tyrosine phosphatase, receptor type, H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25331451-1	chr8	25330951	25331951	+	572.0	f0_balb.idr	Intergenic	Intergenic	-25181.0	NR_040352	74489.0	Mm.256468	NR_040352	ENSMUSG00000110140	5430421F17Rik	-	RIKEN cDNA 5430421F17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-28069837-2	chr5	28069337	28070337	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1575.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98839792-2	chr15	98839292	98840292	+	572.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033276, exon 49 of 55)	exon (NM_001033276, exon 49 of 55)	-8284.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58334078-1	chr11	58333578	58334578	+	572.0	f1_balb.idr	intron (NM_001308167, intron 2 of 6)	intron (NM_001308167, intron 2 of 6)	3288.0	NM_001308168	79566.0	Mm.290534	NM_024480	ENSMUSG00000013646	Sh3bp5l	2310074E09Rik|BC003251|mKIAA1720	SH3 binding domain protein 5 like	protein-coding	0.0	4.5	0.0	4.5	0.0	0.0
Merged-chr5-91977035-2	chr5	91976537	91977537	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10436.0	NM_001177577	381651.0	Mm.332494	NM_001177577	ENSMUSG00000096035	Odaph	Gm1045|Gm1045-a|Gm1045-b	odontogenesis associated phosphoprotein	protein-coding	1.5	8.0	10.5	18.5	3.5	5.5
Merged-chr10-84162825-1	chr10	84162325	84163325	+	572.0	f0_balb.idr	Intergenic	Intergenic	-62128.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47500700-2	chr17	47500200	47501200	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356290, intron 2 of 7)	B2_Mm2|SINE|B2	1591.0	NM_001356290	63856.0	Mm.275901	NM_022015	ENSMUSG00000023980	Taf8	AW260255|Tbn	TATA-box binding protein associated factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142820920-2	chr5	142820420	142821420	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3533.0	NM_001122730	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75072854-2	chr8	75072354	75073354	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20764.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	2.5	0.0	0.0	1.0	0.0	0.5
Merged-chr12-116141918-1	chr12	116141418	116142418	+	572.0	f1_c57bl6.idr	intron (NM_009511, intron 10 of 12)	intron (NM_009511, intron 10 of 12)	64192.0	NM_009511	22355.0	Mm.395245	NM_009511	ENSMUSG00000011171	Vipr2	VPAC2|VPAC2R|Vip2	vasoactive intestinal peptide receptor 2	protein-coding	0.0	5.0	1.0	0.0	0.5	0.5
Merged-chr10-117149502-2	chr10	117149002	117150002	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1028.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125429571-1	chr5	125429071	125430071	+	572.0	f1_c57bl6.idr	intron (NM_203319, intron 4 of 26)	B3|SINE|B2	4477.0	NM_203319	208144.0	Mm.296385	NM_203319	ENSMUSG00000029480	Dhx37	Gm1050|Gm451|mKIAA1517	DEAH (Asp-Glu-Ala-His) box polypeptide 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-83732844-2	chr13	83732344	83733344	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152245, intron 2 of 3)	intron (NR_152245, intron 2 of 3)	351.0	NR_152246	320203.0	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik|ECONEXIN|EyeLinc1|Visc-1	RIKEN cDNA C130071C03 gene	ncRNA	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr3-87616569-1	chr3	87616069	87617069	+	572.0	f1_balb.idr	promoter-TSS (NM_001003912)	promoter-TSS (NM_001003912)	-990.0	NM_001360197	213498.0	Mm.287267	NM_001003912	ENSMUSG00000041977	Arhgef11	PDZ-RhoGEF|Prg|RhoGEF|mKIAA0380	Rho guanine nucleotide exchange factor (GEF) 11	protein-coding	7.0	18.0	15.5	9.0	23.5	19.5
Merged-chr3-58697427-2	chr3	58696927	58697927	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045167, intron 2 of 7)	intron (NR_045167, intron 2 of 7)	4838.0	NR_045167	71301.0	Mm.254475	NR_045167	ENSMUSG00000097725	4930593A02Rik	4933440I01Rik	RIKEN cDNA 4930593A02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60819632-2	chr13	60819132	60820132	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16788.0	NM_027344	70202.0	Mm.158337	NM_027344	ENSMUSG00000056728	Ctsll3	2310051M13Rik	cathepsin L-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20210637-2	chr11	20210137	20211137	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 1 of 5)	B2_Mm1a|SINE|B2	9225.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	4.0	9.5	2.0	1.5	9.5	1.0
Merged-chr8-115703414-2	chr8	115702914	115703914	+	572.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001025577, exon 1 of 1)	3' UTR (NM_001025577, exon 1 of 1)	3480.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81864162-2	chr7	81863702	81864702	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291282, intron 2 of 9)	intron (NM_001291282, intron 2 of 9)	1515.0	NM_001291282	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	8.0	12.5	17.0	9.5	10.0	13.5
Merged-chr9-95698292-2	chr9	95697792	95698792	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52066.0	NM_001311123	22063.0	Mm.149633	NM_011643	ENSMUSG00000032839	Trpc1	Mtrp1|Trp1|Trrp1	transient receptor potential cation channel, subfamily C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-123265502-2	chr10	123265002	123266002	+	572.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045514, exon 1 of 6)	non-coding (NR_045514, exon 1 of 6)	1426.0	NM_001252387	268354.0	Mm.51939	NM_182807	ENSMUSG00000044071	Fam19a2	6330575M02|FAM19A2 TAFA-2|Sam2|TAFA2|Tafa-2	family with sequence similarity 19, member A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115196944-1	chr11	115196444	115197444	+	572.0	f1_c57bl6.idr	intron (NM_001033393, intron 2 of 9)	intron (NM_001033393, intron 2 of 9)	9457.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	25.5	20.5	11.5	7.0	0.5	5.0
Merged-chr8-72285519-2	chr8	72285019	72286019	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33543.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	5.0	1.0	2.5	1.5	8.5	2.5
Merged-chr7-79934065-2	chr7	79933565	79934565	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027420, intron 1 of 5)	intron (NM_027420, intron 1 of 5)	1199.0	NM_027420	70420.0	Mm.34266	NM_027420	ENSMUSG00000039043	Arpin	2610034B18Rik	actin-related protein 2/3 complex inhibitor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76860472-2	chr16	76859972	76860972	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER97b|DNA|hAT-Tip100	-81380.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69079791-2	chr11	69079291	69080291	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6365.0	NR_028566	100216530.0	Mm.453052	NR_028566	ENSMUSG00000064899	Snord118	MBI-34	small nucleolar RNA, C/D box 118	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-26590473-2	chr11	26589973	26590973	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027260, intron 2 of 12)	intron (NM_027260, intron 2 of 12)	3447.0	NM_027260	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	33.0	21.0	13.0	22.5	12.5	22.5
Merged-chr18-68952054-1	chr18	68951554	68952554	+	572.0	f0_balb.idr	promoter-TSS (NR_038051)	promoter-TSS (NR_038051)	-526.0	NR_038051	78931.0	Mm.160155	NR_038051		4930546C10Rik	-	RIKEN cDNA 4930546C10 gene	ncRNA	5.5	1.5	1.0	0.0	13.5	2.5
Merged-chr4-128658087-2	chr4	128657587	128658587	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	ID_B1|SINE|B4	3385.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-112657738-1	chr4	112657238	112658238	+	572.0	f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	43998.0	NM_001285963	329919.0	Mm.259806	NM_177865	ENSMUSG00000034359	Skint2	A430070M19|B7S3|Skint-2	selection and upkeep of intraepithelial T cells 2	protein-coding	6.5	2.5	0.0	0.0	8.0	2.0
Merged-chr7-25218472-2	chr7	25217972	25218972	+	572.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106015)	promoter-TSS (NR_106015)	-747.0	NR_106015	102466794.0		NR_106015	ENSMUSG00000098325	Mir7048	Gm27274|mmu-mir-7048	microRNA 7048	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-48961873-2	chr13	48961373	48962373	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033268, intron 1 of 17)	intron (NM_001033268, intron 1 of 17)	5955.0	NM_001033268	218236.0	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29041399-1	chr7	29040899	29041899	+	572.0	f1_balb.idr	intron (NM_009109, intron 84 of 105)	B3|SINE|B2	42295.0	NR_035489	100316710.0		NR_035489	ENSMUSG00000089219	Mir1963	mir-1963|mmu-mir-1963	microRNA 1963	ncRNA	3.0	7.5	3.5	13.0	0.0	5.0
Merged-chr19-44392806-1	chr19	44392306	44393306	+	572.0	f1_balb.idr	Intergenic	Intergenic	14903.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	8.0	20.0	7.5	24.0	15.0	8.0
Merged-chr14-88541976-1	chr14	88541476	88542476	+	572.0	f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-70580.0	NM_178685	219257.0	Mm.128861	NM_178685	ENSMUSG00000050505	Pcdh20	C630015B17Rik|Pcdh13	protocadherin 20	protein-coding	4.5	1.5	0.5	5.0	0.0	3.5
Merged-chr2-45045379-2	chr2	45044879	45045879	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-22202.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31115260-2	chr17	31114760	31115760	+	572.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009593, exon 15 of 15)	3' UTR (NM_009593, exon 15 of 15)	14351.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-24974214-1	chr12	24973714	24974714	+	572.0	f1_c57bl6.idr	promoter-TSS (NM_001081378)	promoter-TSS (NM_001081378)	-718.0	NM_001081378	77480.0	Mm.250641	NM_001081378	ENSMUSG00000036333	Kidins220	3110039L19Rik|AI194387|AI316525|C330002I19Rik|mKIAA1250	kinase D-interacting substrate 220	protein-coding	1.0	10.0	12.0	9.0	13.5	1.0
Merged-chr8-112581647-1	chr8	112581147	112582147	+	572.0	f1_balb.idr	intron (NM_130457, intron 1 of 23)	7SK|RNA|RNA	11604.0	NM_130457	170571.0	Mm.209232	NM_130457	ENSMUSG00000031772	Cntnap4	Caspr4|E130114F09Rik	contactin associated protein-like 4	protein-coding	0.0	4.5	0.0	0.0	0.0	0.0
Merged-chr18-62172114-1	chr18	62171614	62172614	+	572.0	f0_balb.idr	Intergenic	RLTR17|LTR|ERVK	7867.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	1.5	22.0	6.0	3.0	11.5	12.5
Merged-chr13-36190806-2	chr13	36190306	36191306	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 1 of 5)	Tigger17a|DNA|TcMar-Tigger	73163.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31169813-2	chr16	31169313	31170313	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030138, intron 1 of 22)	RLTR11B|LTR|ERVK	31425.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	0.0	0.0	1.0	0.0	0.0	5.0
Merged-chr2-57240038-2	chr2	57239538	57240538	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010274, intron 1 of 16)	B2_Mm1t|SINE|B2	1656.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-74697857-1	chr2	74697357	74698357	+	572.0	f0_balb.idr	promoter-TSS (NM_013555)	promoter-TSS (NM_013555)	94.0	NM_013555	15438.0	Mm.26544	NM_013555	ENSMUSG00000043342	Hoxd9	Hox-4.4|Hox-5.2	homeobox D9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76288662-2	chr14	76288162	76289162	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37200.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172519713-1	chr1	172519213	172520213	+	572.0	f1_balb.idr	Intergenic	Arthur1B|DNA|hAT-Tip100	-1417.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	0.0	1.5	0.0	1.0	0.0	0.0
Merged-chr15-33798755-1	chr15	33798255	33799255	+	572.0	f1_c57bl6.idr	Intergenic	L1VL1|LINE|L1	-110872.0	NM_001085421	239364.0	Mm.60794	NM_001085421	ENSMUSG00000038984	Tspyl5	6330530B20|E130308C19Rik	testis-specific protein, Y-encoded-like 5	protein-coding	0.5	0.0	1.5	0.0	0.0	0.0
Merged-chr3-100133526-2	chr3	100133026	100134026	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028892, intron 48 of 48)	Lx6|LINE|L1	28881.0	NM_175552	269470.0	Mm.24591	NM_175552	ENSMUSG00000033285	Wdr3	AW546279|D030020G18Rik	WD repeat domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr18-74911075-3	chr18	74910574	74911574	+	572.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	50189.0	NM_010720	16891.0	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30958953-1	chr5	30958453	30959453	+	572.0	f1_c57bl6.idr	intron (NM_001294302, intron 2 of 7)	intron (NM_001294302, intron 2 of 7)	1374.0	NM_001294302	50907.0	Mm.272414	NM_016703	ENSMUSG00000045302	Preb	C85705	prolactin regulatory element binding	protein-coding	2.0	12.5	17.0	13.5	7.0	5.0
Merged-chr17-28730908-2	chr17	28730408	28731408	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168508, intron 8 of 11)	MTE-int|LTR|ERVL-MaLR	38340.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92821820-1	chr16	92821320	92822320	+	572.0	f0_balb.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	4254.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44951850-1	chr16	44951350	44952350	+	572.0	f0_balb.idr	intron (NM_027578, intron 2 of 4)	ORR1C2|LTR|ERVL-MaLR	8172.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-75344787-1	chr13	75344287	75345287	+	572.0	f0_balb.idr	Intergenic	Intergenic	254930.0	NM_013628	18548.0	Mm.1333	NM_013628	ENSMUSG00000021587	Pcsk1	Nec-1|Nec1|PC1|PC3|Phpp-1|SPC3	proprotein convertase subtilisin/kexin type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40157930-1	chr4	40157430	40158430	+	572.0	f0_c57.idr	intron (NM_007386, intron 1 of 20)	intron (NM_007386, intron 1 of 20)	14665.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71663177-2	chr2	71662677	71663677	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-56240.0	NR_037979	381371.0	Mm.330284	NM_201366	ENSMUSG00000064263	Platr26	Gm1631	pluripotency associated transcript 26	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123130886-2	chr5	123130386	123131386	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175092, intron 2 of 4)	intron (NM_175092, intron 2 of 4)	1743.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-86947196-1	chr3	86946696	86947696	+	572.0	f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-26312.0	NM_001195498	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	1.5	2.0	14.5	21.0	65.0	52.5
Merged-chr5-112907569-1	chr5	112907069	112908069	+	572.0	f0_balb.idr	Intergenic	Intergenic	-11207.0	NM_028901	74376.0	Mm.441903	NM_028901	ENSMUSG00000072720	Myo18b	4932408L24Rik|4933411E19Rik|Gm448	myosin XVIIIb	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45283553-2	chr19	45283053	45284053	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48317.0	NM_010691	16814.0	Mm.116815	NM_010691	ENSMUSG00000025216	Lbx1	Lbx1h	ladybird homeobox 1	protein-coding	4.0	0.0	0.0	0.0	0.0	1.0
Merged-chr13-9908295-2	chr13	9907795	9908795	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 4 of 4)	intron (NM_033269, intron 4 of 4)	-142974.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33891645-1	chr17	33891145	33892145	+	572.0	f1_balb.idr	Intergenic	B1_Mur3|SINE|Alu	-1012.0	NM_001195298	100502766.0	Mm.335713	NM_001195298	ENSMUSG00000079553	Kifc1	100042970|Gm4137|HSET|KNSL2|Kifc5a|Knsl2a|Tctex-7|Tctex-7A|Tctex7|Tctex7a	kinesin family member C1	protein-coding	0.0	6.5	2.5	10.0	13.5	1.0
Merged-chr4-120744360-1	chr4	120743860	120744860	+	572.0	f1_c57bl6.idr	intron (NM_001081142, intron 1 of 13)	intron (NM_001081142, intron 1 of 13)	2816.0	NM_001081142	60613.0	Mm.249977	NM_001081142	ENSMUSG00000028631	Kcnq4	-	potassium voltage-gated channel, subfamily Q, member 4	protein-coding	1.0	0.0	0.0	1.0	0.0	0.0
Merged-chr18-12170167-1	chr18	12169667	12170667	+	572.0	f1_balb.idr	intron (NM_029623, intron 2 of 19)	B1_Mus1|SINE|Alu	1437.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	0.0	0.5	0.0	1.0	0.0	1.0
Merged-chr4-19707491-2	chr4	19706991	19707991	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_074090, intron 1 of 24)	intron (NR_074090, intron 1 of 24)	1513.0	NM_177327	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	1.0	37.5	7.5	6.0	12.5	4.5
Merged-chr8-45331459-2	chr8	45330959	45331959	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133969, intron 1 of 10)	intron (NM_133969, intron 1 of 10)	1737.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-24514452-1	chr1	24513952	24514952	+	572.0	f1_c57bl6.idr	intron (NM_007733, intron 9 of 50)	intron (NM_007733, intron 9 of 50)	72985.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	1.5	3.5	1.5	1.5	3.5	0.5
Merged-chr16-17651841-2	chr16	17651341	17652341	+	572.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_033609, exon 18 of 18)	3' UTR (NM_033609, exon 18 of 18)	5371.0	NM_001166164	72315.0	Mm.297777	NM_001166164	ENSMUSG00000041617	Ccdc74a	2310015A05Rik	coiled-coil domain containing 74A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75214452-2	chr8	75213949	75214949	+	572.0	f0_balb.idr|f1_balb.idr	intron (NM_029182, intron 1 of 2)	intron (NM_029182, intron 1 of 2)	505.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	0.0	0.0	1.5	0.0	2.5	1.5
Merged-chr11-76483395-2	chr11	76482895	76483895	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 2 of 21)	intron (NM_001346670, intron 2 of 21)	11100.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	62.0	147.0	110.5	68.5	214.0	131.0
Merged-chr19-47146621-1	chr19	47146121	47147121	+	572.0	f1_balb.idr	Intergenic	Intergenic	-2447.0	NM_001081271	546729.0	Mm.439624	NM_001081271	ENSMUSG00000079258	Calhm1	EG546729	calcium homeostasis modulator 1	protein-coding	5.0	2.0	9.5	7.5	3.0	4.0
Merged-chr2-167591566-2	chr2	167591066	167592066	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40439.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43460684-1	chr17	43460184	43461184	+	572.0	f0_c57.idr	Intergenic	Intergenic	42089.0	NM_008585	17287.0	Mm.5346	NM_008585	ENSMUSG00000023914	Mep1a	AI098089|AW107200|Mep-1|Mep-1a|Mep1	meprin 1 alpha	protein-coding	0.0	14.5	4.0	7.5	3.0	3.0
Merged-chr6-96114499-1	chr6	96113999	96114999	+	572.0	f0_balb.idr	intron (NM_182808, intron 1 of 4)	intron (NM_182808, intron 1 of 4)	1345.0	NM_182808	320265.0	Mm.489890	NM_182808	ENSMUSG00000059187	Fam19a1	C630007B19Rik|FAM19A1 TAFA-1|TAFA1|Tafa-1	family with sequence similarity 19, member A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-72244529-1	chr2	72244029	72245029	+	572.0	f0_balb.idr	intron (NM_001355478, intron 25 of 26)	intron (NM_001355478, intron 25 of 26)	-41108.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90267882-2	chr9	90267382	90268382	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	2887.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102267613-3	chr11	102267091	102268091	+	571.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-1232.0	NM_148953	217217.0	Mm.216432	NM_148953	ENSMUSG00000034768	Asb16	-	ankyrin repeat and SOCS box-containing 16	protein-coding	0.0	3.5	4.0	5.5	1.5	1.5
Merged-chr10-93951196-2	chr10	93950696	93951696	+	571.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR106_Mam|LTR|LTR	12667.0	NR_029764	723908.0		NR_029764	ENSMUSG00000065607	Mir331	Mirn331|mmu-mir-331	microRNA 331	ncRNA	34.5	54.0	40.5	11.5	14.5	12.5
Merged-chr11-100745869-2	chr11	100745369	100746369	+	571.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081194, exon 13 of 17)	exon (NM_001081194, exon 13 of 17)	-7654.0	NM_001305003	19345.0	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-86805632-3	chr5	86805122	86806122	+	571.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177680, intron 1 of 16)	B1_Mur4|SINE|Alu	1356.0	NM_001359907	231386.0	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147426145-2	chr4	147425645	147426645	+	571.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	-127132.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-132579028-2	chr2	132578528	132579528	+	571.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291052)	promoter-TSS (NM_001291052)	-780.0	NM_001355652	74182.0	Mm.211211	NM_027096	ENSMUSG00000027346	Gpcpd1	2310004G06Rik|2310032D16Rik|AU015213|Gde5|Prei4|mKIAA1434	glycerophosphocholine phosphodiesterase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8735043-3	chr3	8734530	8735530	+	571.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67992.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147420327-2	chr4	147419827	147420827	+	571.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	-132950.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-29716669-2	chr15	29716169	29717169	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	-3265.0	NR_039542	100628607.0		NR_039542	ENSMUSG00000092639	Mir3964	mmu-mir-3964|mu-mir-3964	microRNA 3964	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94630523-2	chr11	94630023	94631023	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133807, intron 1 of 6)	intron (NM_133807, intron 1 of 6)	699.0	NM_133807	98238.0	Mm.172720	NM_133807	ENSMUSG00000020869	Lrrc59	AA959742|C78668	leucine rich repeat containing 59	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-127129165-2	chr4	127128665	127129665	+	571.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001099319, exon 3 of 3)	3' UTR (NM_001099319, exon 3 of 3)	3122.0	NM_001099319	100039968.0	Mm.392655	NM_001099319	ENSMUSG00000070737	Tmem35b	Gm12942|Zmym6nb	transmembrane protein 35B	protein-coding	0.0	3.0	9.0	0.0	13.5	5.0
Merged-chr8-120577561-2	chr8	120577061	120578061	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 14 of 15)	intron (NM_001145896, intron 14 of 15)	11514.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24078513-2	chr17	24078013	24079013	+	571.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011062, exon 14 of 14)	3' UTR (NM_011062, exon 14 of 14)	-5028.0	NM_027008	69259.0	Mm.28171	NM_027008	ENSMUSG00000016946	Kctd5	2610030N08Rik|mKIAA0176	potassium channel tetramerisation domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44457526-2	chr9	44457026	44458026	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2759.0	NM_009476	22269.0	Mm.4453	NM_009476	ENSMUSG00000041523	Upk2	AW491716|UPII	uroplakin 2	protein-coding	0.0	0.5	11.0	4.0	0.0	6.0
Merged-chr19-10918478-2	chr19	10917978	10918978	+	571.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009580, exon 4 of 12)	exon (NM_009580, exon 4 of 12)	2123.0	NM_009580	22786.0	Mm.24767	NM_009580	ENSMUSG00000024734	Zp1	-	zona pellucida glycoprotein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-7846426-2	chr15	7845926	7846926	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30876.0	NM_001301357	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93191471-2	chr16	93190971	93191971	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161718.0	NR_040486	69857.0	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-89839352-2	chr2	89838852	89839852	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-3409.0	NM_146983	258985.0	Mm.223374	NM_146983	ENSMUSG00000075073	Olfr1256	MOR231-1	olfactory receptor 1256	protein-coding	1.0	1.0	2.0	1.0	0.0	2.0
Merged-chr10-94558472-2	chr10	94557972	94558972	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359760, intron 1 of 3)	B2_Mm2|SINE|B2	7552.0	NM_001359760	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22003834-2	chr11	22003334	22004334	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2183.0	NM_011023	18423.0	Mm.129663	NM_011023	ENSMUSG00000005917	Otx1	A730044F23Rik|jv	orthodenticle homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-9306403-2	chr15	9305903	9306903	+	571.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_207216, exon 4 of 7)	exon (NM_207216, exon 4 of 7)	26574.0	NM_207216	105887.0	Mm.482274	NM_207216	ENSMUSG00000072664	Ugt3a1	AI746432	UDP glycosyltransferases 3 family, polypeptide A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87036421-2	chr1	87035921	87036921	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172157, intron 15 of 21)	intron (NM_001172157, intron 15 of 21)	53507.0	NM_007433	11650.0	Mm.195224	NM_007433	ENSMUSG00000026246	Alppl2	Akp5|C77216|D1Ertd816e|EAP	alkaline phosphatase, placental-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44262343-2	chr7	44261843	44262843	+	571.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_152170)	TTS (NR_152170)	865.0	NR_152170	628854.0	Mm.451981	NR_152170		Gm15517	-	predicted gene 15517	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-80703278-2	chr16	80702778	80703778	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB-int|LTR|ERVL-MaLR	-497419.0	NM_001113208	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-73946777-2	chr17	73946277	73947277	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 1 of 35)	intron (NM_011723, intron 1 of 35)	3419.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150619140-2	chr4	150618640	150619640	+	571.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001085492, exon 22 of 23)	exon (NM_001085492, exon 22 of 23)	33034.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.0	7.5	0.0	0.0	1.5	0.0
Merged-chr19-44409669-2	chr19	44409169	44410169	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1960.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78217492-2	chr10	78216992	78217992	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081055, intron 5 of 22)	intron (NM_001081055, intron 5 of 22)	27150.0	NM_001081055	216131.0	Mm.27539	NM_001081055	ENSMUSG00000000374	Trappc10	B230307C21Rik|Gm870|Tmem1|b2b2416Clo|b2b2613Clo	trafficking protein particle complex 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124469623-2	chr5	124469123	124470123	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030259, intron 2 of 3)	L2b|LINE|L2	8612.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-26461396-2	chr5	26460896	26461896	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_029445, intron 4 of 4)	MLT1D|LTR|ERVL-MaLR	31918.0	NR_029445	75942.0	Mm.50087	NR_029445	ENSMUSG00000029044	4930584F24Rik	1700001J09Rik|4930522C06Rik	RIKEN cDNA 4930584F24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20648194-2	chr11	20647694	20648694	+	571.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_021372, exon 2 of 2)	exon (NM_021372, exon 2 of 2)	16217.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	1.5	0.0	1.0	1.0	0.0	2.0
Merged-chr11-115588088-1	chr11	115587588	115588588	+	571.5	f1_balb.idr	intron (NM_001252067, intron 10 of 15)	intron (NM_001252067, intron 10 of 15)	15828.0	NM_001252067	260302.0	Mm.119479	NM_173048	ENSMUSG00000020740	Gga3	C230037M19Rik|mKIAA0154	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	10.5
Merged-chr1-39392323-2	chr1	39391823	39392823	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357521, intron 6 of 19)	intron (NM_001357521, intron 6 of 19)	24472.0	NM_001252218	114641.0	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70877120-2	chr17	70876620	70877620	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-16520.0	NR_035427	100316676.0		NR_035427	ENSMUSG00000080468	Mir1195	Mirn1195|mmu-mir-1195	microRNA 1195	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99073424-1	chr7	99072924	99073924	+	571.5	f1_balb.idr	intron (NM_178635, intron 5 of 14)	intron (NM_178635, intron 5 of 14)	67720.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	8.0	1.5	1.0	6.0	8.5	4.5
Merged-chr9-13651831-2	chr9	13651317	13652317	+	571.5	f0_balb.idr|f1_balb.idr	intron (NM_001013813, intron 1 of 3)	intron (NM_001013813, intron 1 of 3)	-10643.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-12521441-2	chr4	12520941	12521941	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-349426.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66385998-1	chr7	66385498	66386498	+	571.5	f0_c57.idr	intron (NM_146191, intron 1 of 33)	Lx7|LINE|L1	2343.0	NM_146191	233328.0	Mm.33284	NM_146191	ENSMUSG00000015133	Lrrk1	AW319595|C230002E15Rik|D130026O16Rik|mKIAA1790	leucine-rich repeat kinase 1	protein-coding	29.5	41.0	51.5	22.0	28.5	29.0
Merged-chr16-33771766-2	chr16	33771266	33772266	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TGGA)n|Simple_repeat|Simple_repeat	-22271.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53001409-2	chr19	53000909	53001909	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133216, intron 14 of 20)	intron (NM_133216, intron 14 of 20)	9347.0	NR_105834	102465220.0		NR_105834	ENSMUSG00000098730	Mir6407	Gm27832|mmu-mir-6407	microRNA 6407	ncRNA	1.5	2.0	0.0	0.0	0.0	0.0
Merged-chr1-140217382-2	chr1	140216882	140217882	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	-28875.0	NM_001081027	240776.0	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77975646-2	chr10	77975146	77976146	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3004.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71242929-2	chr17	71242429	71243429	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357791, intron 14 of 19)	MER5A|DNA|hAT-Charlie	38275.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163604061-2	chr2	163603561	163604561	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_131225, intron 1 of 3)	URR1B|DNA|hAT-Charlie	1747.0	NR_131225	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-9417303-2	chr5	9416803	9417803	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153371, intron 4 of 21)	Lx8|LINE|L1	41599.0	NR_030537	100124492.0		NR_030537	ENSMUSG00000077896	Mir879	Mirn879|mir-879|mmu-mir-879	microRNA 879	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79335602-2	chr15	79335102	79336102	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7231.0	NM_001199023	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59200533-2	chr2	59200033	59201033	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	39683.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3420403-2	chr2	3419903	3420903	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355205, intron 1 of 3)	intron (NM_001355205, intron 1 of 3)	-1274.0	NM_001355209	104362.0	Mm.2688	NM_008579	ENSMUSG00000026650	Meig1	MLZ-278|Meg1	meiosis expressed gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43466589-2	chr1	43466089	43467089	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	20838.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132882968-2	chr4	132882468	132883468	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133887, intron 1 of 8)	intron (NM_133887, intron 1 of 8)	1490.0	NM_133887	100226.0	Mm.28237	NM_133887	ENSMUSG00000028879	Stx12	AI850350|AU041521|Stx13	syntaxin 12	protein-coding	13.0	4.0	3.5	2.0	16.5	12.5
Merged-chr2-31804659-2	chr2	31804159	31805159	+	571.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001283045)	TTS (NM_001283045)	5921.0	NM_183424	227717.0	Mm.185027	NM_183424	ENSMUSG00000043102	Qrfp	P518	pyroglutamylated RFamide peptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120092444-2	chr5	120091944	120092944	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-24069.0	NM_028762	74111.0	Mm.41022	NM_028762	ENSMUSG00000029594	Rbm19	1200009A02Rik|AV302714|NPO	RNA binding motif protein 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69968561-2	chr8	69968082	69969082	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 1 of 12)	MT2B|LTR|ERVL	5801.0	NM_001113346	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	0.0	3.0	4.0	1.5	0.0	0.5
Merged-chr17-76956570-2	chr17	76956070	76957070	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	1095547.0	NR_033456	100043885.0	Mm.127562	NR_033456		Gm4710	-	predicted gene 4710	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147293212-2	chr5	147292712	147293712	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9914.0	NR_105854	102465309.0		NR_105854	ENSMUSG00000098687	Mir7k	Gm27814|Mirlet7k|mmu-let-7k	microRNA 7k	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121570331-2	chr3	121569831	121570831	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37987.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130820743-2	chr4	130820243	130821243	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 3 of 4)	intron (NM_011520, intron 3 of 4)	28206.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141007011-2	chr4	141006511	141007511	+	571.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029097, exon 29 of 29)	exon (NM_029097, exon 29 of 29)	-3413.0	NM_001161799	17150.0	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75499890-2	chr10	75499390	75500390	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	17491.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101508736-2	chr7	101508236	101509236	+	571.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001143849, exon 24 of 30)	exon (NM_001143849, exon 24 of 30)	33360.0	NR_029791	387157.0		NR_029791	ENSMUSG00000065446	Mir139	Mirn139|mir-139|mmu-mir-139	microRNA 139	ncRNA	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr8-70548293-2	chr8	70547793	70548793	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	8618.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	0.5	0.0	0.5	8.0	2.0	2.0
Merged-chr19-10822073-2	chr19	10821573	10822573	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009852, intron 1 of 12)	intron (NM_009852, intron 1 of 12)	7985.0	NM_001037801	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36282264-2	chr1	36281764	36282764	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-8839.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46639424-2	chr17	46638924	46639924	+	571.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029091, exon 7 of 17)	exon (NM_029091, exon 7 of 17)	6656.0	NM_001357130	74764.0	Mm.279599	NM_029091	ENSMUSG00000003546	Klc4	1200014P03Rik|AA408085|AW146303|Knsl8	kinesin light chain 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103429409-2	chr3	103428909	103429909	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-145836.0	NM_018800	54524.0	Mm.88818	NM_018800	ENSMUSG00000027849	Syt6	3110037A08Rik|AW048930|sytVI	synaptotagmin VI	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110717174-2	chr7	110716674	110717674	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-51032.0	NM_001276301	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5923051-2	chr19	5922551	5923551	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026772, intron 1 of 1)	intron (NM_026772, intron 1 of 1)	1765.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124553744-1	chr5	124553244	124554244	+	571.5	f1_c57bl6.idr	intron (NM_001190795, intron 1 of 13)	intron (NM_001190795, intron 1 of 13)	880.0	NM_026409	67848.0	Mm.281601	NM_026409	ENSMUSG00000029389	Ddx55	2810021H22Rik|mKIAA1595	DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	protein-coding	0.0	0.0	4.0	3.0	1.5	4.0
Merged-chr15-100554225-2	chr15	100553725	100554725	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-2217.0	NM_001289603	21422.0	Mm.219040	NM_033476	ENSMUSG00000009733	Tfcp2	CP-2|CP2|D230015P20Rik|LBP-1c|LBP-1d|LBP1|LSF|Tcfcp2|UBP-1	transcription factor CP2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191172641-2	chr1	191172141	191173141	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007498, intron 2 of 3)	B3|SINE|B2	-7824.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-10686570-2	chr8	10686070	10687070	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5B|DNA|hAT-Charlie	195884.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145718773-2	chr2	145718273	145719273	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 2 of 3)	RMER1A|Other|Other	17578.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99230479-2	chr5	99229939	99230939	+	571.5	f0_c57.idr|f1_balb.idr	intron (NM_181318, intron 8 of 13)	L1ME2|LINE|L1	22488.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	8.0	1.5	2.5	5.0	2.5
Merged-chr6-114282212-2	chr6	114281712	114282712	+	571.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178703)	promoter-TSS (NM_178703)	-423.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94142834-2	chr13	94142334	94143334	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	85038.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79504384-2	chr15	79503884	79504884	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008427, intron 1 of 1)	intron (NM_008427, intron 1 of 1)	857.0	NM_008427	16520.0	Mm.39759	NM_008427	ENSMUSG00000044216	Kcnj4	IRK3|Kcnf2|MB-IRK3	potassium inwardly-rectifying channel, subfamily J, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128712263-2	chr4	128711776	128712776	+	571.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001195130, exon 7 of 15)	exon (NM_001195130, exon 7 of 15)	-15295.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88847868-2	chr6	88847368	88848368	+	571.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045880)	TTS (NR_045880)	5014.0	NR_045880	100038356.0	Mm.442704	NR_045880	ENSMUSG00000085828	Gm15612	-	predicted gene 15612	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-62986459-2	chr1	62985959	62986959	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	127808.0	NM_001081436	227195.0	Mm.74718	NM_001081436	ENSMUSG00000040865	Ino80d	7330405I11|A430093A21Rik|BC010584	INO80 complex subunit D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120474410-2	chr6	120473910	120474910	+	571.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008359, exon 5 of 13)	exon (NM_008359, exon 5 of 13)	11213.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	4.5	6.0	11.5	0.0	0.0	2.5
Merged-chr1-183980876-2	chr1	183980376	183981376	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53122.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117245550-2	chr8	117245050	117246050	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-11469.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-142522799-2	chr6	142522299	142523299	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14842.0	NM_001316322	16832.0	Mm.9745	NM_008492	ENSMUSG00000030246	Ldhb	AI790582|H-Ldh|LDH-B|LDH-H|Ldh-2|Ldh2	lactate dehydrogenase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-133457744-2	chr2	133457244	133458244	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-94415.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-83692951-2	chr12	83692451	83693451	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008943, intron 1 of 11)	intron (NM_008943, intron 1 of 11)	4388.0	NM_008943	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73076995-2	chr15	73076495	73077495	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13417.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94551620-2	chr11	94551120	94552120	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-2413.0	NM_001013381	237926.0	Mm.342275	NM_001013381	ENSMUSG00000039096	Rsad1	B430319G23|BC056485	radical S-adenosyl methionine domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr10-40192029-2	chr10	40191529	40192529	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	-49775.0	NM_001114332	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-68828016-2	chr7	68827516	68828516	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-78778.0	NM_025549	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-17634857-2	chr14	17634357	17635357	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26103.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181527707-2	chr2	181527207	181528207	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271584, intron 2 of 5)	MLT1K|LTR|ERVL-MaLR	7222.0	NM_001271584	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119754509-2	chr13	119754009	119755009	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175538, intron 1 of 3)	intron (NM_175538, intron 1 of 3)	1373.0	NM_175538	245269.0	Mm.403943	NM_175538	ENSMUSG00000095930	Nim1k	E130304F04Rik|Nim1	NIM1 serine/threonine protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140757997-2	chr5	140757497	140758497	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33870.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5075359-2	chr11	5074859	5075859	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007968, intron 11 of 16)	B3|SINE|B2	-10032.0	NM_001190406	78926.0	Mm.44591	NM_030228	ENSMUSG00000034201	Gas2l1	4930500E24Rik|D0Jmb1|Gar22|TU-71.1	growth arrest-specific 2 like 1	protein-coding	0.0	1.5	5.5	0.0	2.0	6.0
Merged-chr15-82339757-2	chr15	82339257	82340257	+	571.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008669)	promoter-TSS (NM_008669)	-931.0	NM_008669	17939.0	Mm.20325	NM_008669	ENSMUSG00000022453	Naga	-	N-acetyl galactosaminidase, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80745441-2	chr10	80744951	80745951	+	571.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-3176.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73452421-3	chr7	73451918	73452918	+	571.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 32 of 38)	intron (NM_001081345, intron 32 of 38)	-76644.0	NR_040324	319783.0	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124990744-3	chr6	124990265	124991265	+	571.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-5955.0	NM_175696	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	2.0	0.0	0.0	0.0	5.0	3.5
Merged-chr16-55869567-2	chr16	55869067	55870067	+	571.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134457, intron 2 of 5)	intron (NM_001134457, intron 2 of 5)	25712.0	NM_001134457	385658.0	Mm.310635	NM_001134457	ENSMUSG00000075033	Nxpe3	Fam55c|Gm1752|Gm611	neurexophilin and PC-esterase domain family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31232744-2	chr16	31232244	31233244	+	571.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31506.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	0.0	3.0	0.0	3.0	0.0	2.5
Merged-chr5-107723411-2	chr5	107722911	107723911	+	571.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001267621, intron 2 of 6)	CpG	932.0	NM_010278	14581.0	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	6.0	0.0	1.0	0.0	0.0	0.0
Merged-chr3-108081447-2	chr3	108080944	108081944	+	571.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289719, intron 2 of 18)	intron (NM_001289719, intron 2 of 18)	3958.0	NM_001346665	109674.0	Mm.274335	NM_028779	ENSMUSG00000027889	Ampd2	1200014F01Rik|AI552571|Ampd-2|m4521Dajl	adenosine monophosphate deaminase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46029184-2	chr17	46028684	46029684	+	571.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025250, intron 1 of 7)	intron (NM_001025250, intron 1 of 7)	3193.0	NM_001287058	22339.0	Mm.282184	NM_009505	ENSMUSG00000023951	Vegfa	Vegf|Vpf	vascular endothelial growth factor A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91115392-2	chr2	91114892	91115892	+	571.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_011355, exon 5 of 5)	exon (NM_011355, exon 5 of 5)	-2752.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	3.0	2.0	0.0	1.5	0.0	1.0
Merged-chr2-105911167-1	chr2	105910667	105911667	+	571.0	f1_c57bl6.idr	intron (NM_028260, intron 2 of 6)	RMER1B|Other|Other	6529.0	NM_028260	66541.0	Mm.272253	NM_028260	ENSMUSG00000042670	Immp1l	1500034J20Rik|2610528O17Rik|AU042386	IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0.5	1.0	1.5	2.0	1.5	2.5
Merged-chr7-6288601-2	chr7	6288101	6289101	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024928, intron 1 of 4)	intron (NM_001024928, intron 1 of 4)	2021.0	NM_001024928	384763.0	Mm.276279	NM_001024928	ENSMUSG00000054893	Zfp667	A830025F02Rik|Mip1|ZNF667	zinc finger protein 667	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133493425-2	chr4	133492925	133493925	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081156, intron 1 of 1)	intron (NM_001081156, intron 1 of 1)	5125.0	NM_001081156	69539.0	Mm.151594	NM_001081156	ENSMUSG00000056596	Trnp1	2300002D11Rik|Trnp	TMF1-regulated nuclear protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-28419905-1	chr5	28419405	28420405	+	571.0	f0_balb.idr	TTS (NM_028234)	TTS (NM_028234)	-47079.0	NR_015562	654796.0	Mm.57202	NR_015562	ENSMUSG00000097726	9530036O11Rik	-	RIKEN cDNA 9530036O11Rik	ncRNA	0.0	0.0	0.0	0.0	6.0	0.0
Merged-chr7-19713209-2	chr7	19712709	19713709	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109748, intron 3 of 8)	PB1D10|SINE|Alu	2220.0	NM_001109748	53333.0	Mm.61682	NM_016871	ENSMUSG00000002984	Tomm40	AW539759|Mom35|Tom40	translocase of outer mitochondrial membrane 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73111966-1	chr12	73111466	73112466	+	571.0	f0_balb.idr	intron (NM_001362272, intron 2 of 2)	CpG	1279.0	NM_011382	20474.0	Mm.249575	NM_011382	ENSMUSG00000034460	Six4	AI047561|AREC3|TrexBF	sine oculis-related homeobox 4	protein-coding	0.0	0.0	2.5	0.0	2.0	0.0
Merged-chr8-111221217-2	chr8	111220717	111221717	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 1 of 25)	B1_Mur4|SINE|Alu	37985.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50832328-1	chr14	50831828	50832828	+	571.0	f1_balb.idr	intron (NM_009351, intron 43 of 54)	B3A|SINE|B2	24412.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	6.5	4.5	11.0	2.0	6.5	5.5
Merged-chr16-24150698-1	chr16	24150198	24151198	+	571.0	f0_balb.idr	Intergenic	MIRc|SINE|MIR	-68008.0	NR_155457	108168278.0	Mm.417246	NR_155457		Gm46545	-	predicted gene, 46545	ncRNA	0.0	0.0	0.0	3.5	0.0	1.0
Merged-chr17-15820536-2	chr17	15820036	15821036	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178615, intron 2 of 2)	intron (NM_178615, intron 2 of 2)	6050.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-64650078-2	chr6	64649578	64650578	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008167, intron 14 of 15)	intron (NM_008167, intron 14 of 15)	-79047.0	NM_007500	11921.0	Mm.57229	NM_007500	ENSMUSG00000073043	Atoh1	Hath1|MATH-1|Math1|bHLHa14	atonal bHLH transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80767949-2	chr7	80767449	80768449	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 3 of 37)	intron (NM_016721, intron 3 of 37)	35382.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95496893-1	chr16	95496393	95497393	+	571.0	f1_c57bl6.idr	intron (NM_001302183, intron 2 of 8)	intron (NM_001302183, intron 2 of 8)	33472.0	NM_001302179	13876.0	Mm.164531	NM_133659	ENSMUSG00000040732	Erg	D030036I24Rik	ETS transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-53451052-2	chr5	53450552	53451552	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104727.0	NM_001080928	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27271531-2	chr3	27271031	27272031	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45546.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120257481-1	chr10	120256981	120257981	+	571.0	f1_c57bl6.idr	Intergenic	Intergenic	30421.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	0.0	0.0	0.0	0.0	2.5	0.0
Merged-chr7-5112821-3	chr7	5112311	5113311	+	571.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145013, intron 2 of 2)	MTD|LTR|ERVL-MaLR	4100.0	NM_001145013	192658.0	Mm.28764	NM_138954	ENSMUSG00000035191	Rfpl4	D7Ertd486e|Rfpl4a	ret finger protein-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98764562-2	chr15	98764062	98765062	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1444.0	NM_007478	11842.0	Mm.221298	NM_007478	ENSMUSG00000051853	Arf3	5430400P17Rik|AI854770	ADP-ribosylation factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-85594570-2	chr3	85594070	85595070	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144896, intron 2 of 12)	intron (NM_144896, intron 2 of 12)	20441.0	NM_144896	229487.0	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-104916635-1	chr10	104916135	104917135	+	571.0	f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	629366.0	NR_105838	102465222.0		NR_105838	ENSMUSG00000099264	Mir6411	Gm27767|mmu-mir-6411	microRNA 6411	ncRNA	16.0	9.0	0.0	0.0	0.0	6.5
Merged-chr8-113638814-1	chr8	113638314	113639314	+	571.0	f1_c57bl6.idr	exon (NM_173015, exon 3 of 5)	exon (NM_173015, exon 3 of 5)	3015.0	NM_173015	270096.0	Mm.74689	NM_173015	ENSMUSG00000078908	Mon1b	5031407H10|5033413H12Rik	MON1 homolog B, secretory traffciking associated	protein-coding	0.0	0.0	1.5	0.0	1.5	0.5
Merged-chr4-137991696-1	chr4	137991196	137992196	+	571.0	f1_balb.idr	Intergenic	Intergenic	-1760.0	NM_001256198	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	0.0	1.5	2.0	0.0	0.0	1.0
Merged-chr14-20804482-1	chr14	20803982	20804982	+	571.0	f0_balb.idr	Intergenic	Intergenic	10243.0	NR_153779	102631887.0	Mm.122292	NR_153779	ENSMUSG00000114241	Gm30108	-	predicted gene, 30108	ncRNA	1.0	6.5	18.5	3.5	14.5	10.0
Merged-chr6-24954004-2	chr6	24953504	24954504	+	571.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177013, exon 1 of 1)	3' UTR (NM_177013, exon 1 of 1)	2121.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109464126-1	chr4	109463626	109464626	+	571.0	f1_balb.idr	intron (NM_013876, intron 1 of 2)	intron (NM_013876, intron 1 of 2)	12379.0	NM_013876	29864.0	Mm.392580	NM_013876	ENSMUSG00000028557	Rnf11	-	ring finger protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28258423-2	chr17	28257923	28258923	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 2 of 7)	MLT1A1|LTR|ERVL-MaLR	-13285.0	NR_045427	69050.0	Mm.486938	NR_045427	ENSMUSG00000002250	1810013A23Rik	-	RIKEN cDNA 1810013A23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-41182732-1	chr9	41182232	41183232	+	571.0	f0_balb.idr	Intergenic	Intergenic	-23423.0	NR_040392	78500.0	Mm.275715	NR_040392	ENSMUSG00000100837	1700063D05Rik	-	RIKEN cDNA 1700063D05 gene	ncRNA	6.5	5.5	4.0	11.0	2.0	3.0
Merged-chr2-11550961-2	chr2	11550461	11551461	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	2968.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-39392495-2	chr11	39391995	39392995	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2270.0	NR_126439	75315.0	Mm.461295	NR_126439		4930553C11Rik	-	RIKEN cDNA 4930553C11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-5498741-1	chr6	5498241	5499241	+	571.0	f1_c57bl6.idr	Intergenic	Intergenic	-2463.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66212264-2	chr9	66211764	66212764	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010019, intron 2 of 11)	intron (NM_010019, intron 2 of 11)	54038.0	NM_010019	13143.0	Mm.304472	NM_010019	ENSMUSG00000032380	Dapk2	-	death-associated protein kinase 2	protein-coding	2.0	0.5	2.0	9.0	0.0	0.0
Merged-chr2-129696284-2	chr2	129695784	129696784	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018863, intron 2 of 3)	intron (NM_018863, intron 2 of 3)	2374.0	NM_001286502	18610.0	Mm.6239	NM_018863	ENSMUSG00000027400	Pdyn	Dyn	prodynorphin	protein-coding	5.0	0.0	2.5	3.5	5.0	0.0
Merged-chr11-116222318-1	chr11	116221818	116222818	+	571.0	f1_balb.idr	exon (NM_025276, exon 22 of 22)	exon (NM_025276, exon 22 of 22)	6316.0	NR_004853	69681.0	Mm.33677	NR_004853	ENSMUSG00000092300	Cdk3-ps	2310050O10Rik|Cdk3	cyclin-dependent kinase 3, pseudogene	pseudo	0.0	0.0	0.0	0.0	1.5	0.5
Merged-chr6-34674474-2	chr6	34673974	34674974	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 2 of 13)	B4|SINE|B4	-34970.0	NM_145575	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17064526-2	chr17	17064026	17065026	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163919, intron 1 of 4)	L1_Mus3|LINE|L1	423.0	NM_001163919	449000.0	Mm.483718	NM_001005358	ENSMUSG00000096696	Zfp960	-	zinc finger protein 960	protein-coding	2.5	1.0	0.0	0.0	1.5	1.5
Merged-chr2-78870745-2	chr2	78870245	78871245	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356395, intron 2 of 5)	intron (NM_001356395, intron 2 of 5)	1067.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110891509-2	chr9	110891009	110892009	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153354, intron 15 of 25)	intron (NR_153354, intron 15 of 25)	11187.0	NM_001146060	235633.0	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr11-120775661-2	chr11	120775161	120776161	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	8543.0	NM_009053	19719.0	Mm.871	NM_009053	ENSMUSG00000025158	Rfng	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22629950-2	chr11	22629450	22630450	+	571.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117667.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	1.5	0.0	6.5	2.0	2.0	5.0
Merged-chr18-86490839-2	chr18	86490339	86491339	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144946, intron 7 of 10)	intron (NM_144946, intron 7 of 10)	95887.0	NM_144946	246317.0	Mm.329578	NM_144946	ENSMUSG00000050321	Neto1	AI851453|Btcl1|C130005O10Rik	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94148281-2	chr11	94147781	94148781	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63173.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78262827-1	chr15	78262327	78263327	+	571.0	f1_balb.idr	TTS (NM_008677)	TTS (NM_008677)	18016.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	1.5	0.0	0.5	0.0	0.0	0.5
Merged-chr17-84376130-1	chr17	84375630	84376630	+	571.0	f0_balb.idr	intron (NM_183021, intron 26 of 37)	intron (NM_183021, intron 26 of 37)	90078.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128644181-1	chr6	128643681	128644681	+	571.0	f0_balb.idr	Intergenic	Intergenic	-18204.0	NM_053165	94071.0	Mm.197689	NM_053165	ENSMUSG00000030364	Clec2h	Clrf|clr-f	C-type lectin domain family 2, member h	protein-coding	3.0	31.5	23.0	47.0	29.5	40.5
Merged-chr8-111540887-1	chr8	111540387	111541387	+	571.0	f1_balb.idr	intron (NM_001168623, intron 1 of 4)	intron (NM_001168623, intron 1 of 4)	2544.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	5.0	2.5	7.0	0.0	2.5	0.5
Merged-chr1-160842746-1	chr1	160842246	160843246	+	571.0	f1_c57bl6.idr	Intergenic	Intergenic	-49808.0	NM_013862	29809.0	Mm.25833	NM_013862	ENSMUSG00000026721	Rabgap1l	5830411O09Rik|8430421H08Rik|9630005B12Rik|AW049894|HHL|Hh1|mKIAA0471	RAB GTPase activating protein 1-like	protein-coding	15.0	0.5	1.0	1.0	1.5	1.5
Merged-chr7-145256695-2	chr7	145256195	145257195	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_132644, intron 21 of 24)	intron (NR_132644, intron 21 of 24)	27316.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	0.0	0.0	5.5	2.0	0.0	1.0
Merged-chr18-61013625-1	chr18	61013125	61014125	+	571.0	f1_balb.idr	intron (NM_201353, intron 1 of 13)	intron (NM_201353, intron 1 of 13)	574.0	NM_201353	240332.0	Mm.39846	NM_201353	ENSMUSG00000052026	Slc6a7	AW455934|PROT	solute carrier family 6 (neurotransmitter transporter, L-proline), member 7	protein-coding	2.5	0.0	0.5	0.0	0.0	1.5
Merged-chr7-45595615-2	chr7	45595115	45596115	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	19875.0	NM_020013	56636.0	Mm.143736	NM_020013	ENSMUSG00000030827	Fgf21	-	fibroblast growth factor 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-103923297-1	chr8	103922797	103923797	+	571.0	f0_balb.idr	Intergenic	Intergenic	-178328.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150834092-3	chr2	150833605	150834605	+	571.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 12 of 12)	intron (NR_151505, intron 12 of 12)	8465.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-109242666-2	chr13	109242166	109243166	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-82078.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37009265-2	chr1	37008765	37009765	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-69738.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96218308-2	chr3	96217808	96218808	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1608.0	NM_178213	621893.0		NM_178213	ENSMUSG00000063689	Hist2h2ab	EG621893|H2a-613a	histone cluster 2, H2ab	protein-coding	0.0	0.0	0.5	0.0	9.0	2.0
Merged-chr17-26915209-1	chr17	26914709	26915709	+	571.0	f1_balb.idr	Intergenic	RLTR42-int|LTR|ERVK	-1882.0	NM_053173	16580.0	Mm.491138	NM_016761	ENSMUSG00000024301	Kifc5b	Hset|KNSL2|Kifc5a	kinesin family member C5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-3428303-1	chr6	3427803	3428803	+	571.0	f0_balb.idr	Intergenic	Intergenic	-28732.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131439238-1	chr1	131438738	131439738	+	571.0	f0_balb.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	88123.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	10.5	34.0	21.0	23.0	17.0	20.5
Merged-chr11-80138826-2	chr11	80138326	80139326	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183275, intron 2 of 3)	RSINE1|SINE|B4	3327.0	NM_183275	68550.0	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91931552-1	chr2	91931052	91932052	+	571.0	f1_c57bl6.idr	5' UTR (NM_001012335, exon 1 of 5)	5' UTR (NM_001012335, exon 1 of 5)	150.0	NM_001291481	17242.0	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38341983-2	chr6	38341483	38342483	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028864, intron 1 of 8)	intron (NM_028864, intron 1 of 8)	12620.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36713013-3	chr18	36712554	36713554	+	571.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	13761.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	6.0	19.0	15.0	12.0	31.5	6.0
Merged-chr10-58382723-2	chr10	58382223	58383223	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201242, intron 1 of 9)	intron (NM_201242, intron 1 of 9)	11269.0	NM_201242	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191833644-1	chr1	191833144	191834144	+	571.0	f1_c57bl6.idr	TTS (NM_010892)	TTS (NM_010892)	12171.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	2.5	2.0	1.0	0.0	1.5	1.0
Merged-chr14-121895379-1	chr14	121894879	121895879	+	571.0	f1_c57bl6.idr	intron (NM_026861, intron 1 of 8)	intron (NM_026861, intron 1 of 8)	-15971.0	NR_130999	78312.0	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	29.0	14.0	16.5	12.0	24.0	10.5
Merged-chr19-11964402-2	chr19	11963902	11964902	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1442.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	0.0	2.0	5.0	0.5	2.5	2.0
Merged-chr16-92623808-1	chr16	92623308	92624308	+	571.0	f1_c57bl6.idr	intron (NM_001111022, intron 5 of 6)	intron (NM_001111022, intron 5 of 6)	73521.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	3.0	6.0	1.5	0.0	1.0	2.0
Merged-chr11-60186208-1	chr11	60185708	60186708	+	571.0	f0_balb.idr	exon (NM_009021, exon 3 of 6)	exon (NM_009021, exon 3 of 6)	14409.0	NR_105886	102465555.0		NR_105886	ENSMUSG00000098547	Mir6921	Gm27352|mmu-mir-6921	microRNA 6921	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123129131-1	chr5	123128631	123129631	+	571.0	f0_balb.idr	intron (NM_175092, intron 2 of 4)	intron (NM_175092, intron 2 of 4)	3498.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-20014770-2	chr3	20014270	20015270	+	571.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001146324)	TTS (NM_001146324)	20540.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112971157-2	chr12	112970657	112971657	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028193, intron 7 of 17)	intron (NM_028193, intron 7 of 17)	-5325.0	NM_001145900	399566.0	Mm.440140	NM_201646	ENSMUSG00000002803	Btbd6	-	BTB (POZ) domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114918776-2	chr6	114918276	114919276	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	3045.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10498182-2	chr17	10497682	10498682	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 4 of 4)	intron (NM_027032, intron 4 of 4)	41966.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88225499-2	chr7	88224882	88225882	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52703.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62952885-1	chr9	62952385	62953385	+	571.0	f0_balb.idr	intron (NM_019663, intron 1 of 13)	intron (NM_019663, intron 1 of 13)	27994.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95521757-2	chr9	95521257	95522257	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTRETN_Mm|LTR|ERVK	-9761.0	NM_001357974	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	0.5	0.0	3.0	2.0	0.0	0.0
Merged-chr8-16420663-2	chr8	16420163	16421163	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053171, intron 7 of 69)	intron (NM_053171, intron 7 of 69)	-251825.0	NR_037214	100526464.0		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA	4.5	0.0	1.5	4.5	0.0	1.5
Merged-chr16-70352097-1	chr16	70351597	70352597	+	571.0	f1_balb.idr	intron (NM_028803, intron 1 of 15)	intron (NM_028803, intron 1 of 15)	38148.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	1.5	9.5	8.5	8.5	0.0	5.0
Merged-chr10-30771780-1	chr10	30771280	30772280	+	571.0	f0_balb.idr	5' UTR (NM_001358841, exon 2 of 16)	5' UTR (NM_001358841, exon 2 of 16)	31546.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	6.0	11.5	0.5	3.5	8.5	6.0
Merged-chr18-58558657-2	chr18	58558157	58559157	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081072, intron 1 of 9)	intron (NM_001081072, intron 1 of 9)	2417.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80530924-1	chr7	80530424	80531424	+	571.0	f0_balb.idr	intron (NM_001042527, intron 1 of 21)	intron (NM_001042527, intron 1 of 21)	4074.0	NM_007550	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	3.0	14.0	5.5	8.0	12.0	1.5
Merged-chr5-35631933-2	chr5	35631433	35632433	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43170.0	NR_045807	74364.0	Mm.473123	NM_175208	ENSMUSG00000055061	4931431C16Rik	-	RIKEN cDNA 4931431C16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64527770-1	chr1	64527270	64528270	+	571.0	f0_balb.idr	Intergenic	Intergenic	-5034.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-172831326-2	chr2	172830820	172831820	+	571.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109001.0	NM_007557	12162.0	Mm.595	NM_007557	ENSMUSG00000008999	Bmp7	OP1	bone morphogenetic protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-144994088-1	chr6	144993588	144994588	+	571.0	f1_c57bl6.idr	3' UTR (NM_007532, exon 11 of 11)	3' UTR (NM_007532, exon 11 of 11)	54724.0	NM_001024468	12035.0	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	0.0	1.5	1.0	1.5	0.0	0.0
Merged-chr12-5445853-2	chr12	5445353	5446353	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	69351.0	NR_015579	72669.0	Mm.10434	NM_028318		2810032G03Rik	AI461720	RIKEN cDNA 2810032G03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5805699-2	chr19	5805199	5806199	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3027.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98701266-2	chr7	98700766	98701766	+	571.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_144495, exon 1 of 1)	non-coding (NR_144495, exon 1 of 1)	1662.0	NR_144495	100040769.0	Mm.126401	NR_144495		Gm15506	-	predicted gene 15506	ncRNA	6.0	19.5	14.5	3.0	19.0	13.5
Merged-chr16-39432151-2	chr16	39431651	39432651	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-243201.0	NR_153800	102640746.0		NR_153800		Gm36742	-	predicted gene, 36742	ncRNA	21.0	27.0	24.0	21.5	39.5	21.0
Merged-chr13-73263634-1	chr13	73263134	73264134	+	571.0	f0_balb.idr	intron (NM_018885, intron 1 of 5)	intron (NM_018885, intron 1 of 5)	3137.0	NM_018885	50916.0	Mm.103784	NM_018885	ENSMUSG00000021604	Irx4	-	Iroquois homeobox 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-64263780-2	chr15	64263280	64264280	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	48893.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	1.0	0.0	1.5	4.5	0.0	0.5
Merged-chr3-80993548-2	chr3	80993048	80994048	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-42868.0	NM_019971	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45431253-2	chr7	45430753	45431753	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011304, intron 2 of 14)	intron (NM_011304, intron 2 of 14)	3211.0	NM_011304	20174.0	Mm.34410	NM_011304	ENSMUSG00000003868	Ruvbl2	mp47|p47	RuvB-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101062840-1	chr7	101062340	101063340	+	571.0	f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-45935.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	0.0	0.5	1.0	0.0	0.0	0.0
Merged-chr8-11002831-1	chr8	11002331	11003331	+	571.0	f0_balb.idr	intron (NM_001081212, intron 1 of 1)	intron (NM_001081212, intron 1 of 1)	-5019.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79797764-1	chr10	79797264	79798264	+	571.0	f0_balb.idr	intron (NM_023128, intron 1 of 8)	intron (NM_023128, intron 1 of 8)	4192.0	NM_001161747	18483.0	Mm.34650	NM_023128	ENSMUSG00000035863	Palm	-	paralemmin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20038661-2	chr13	20038151	20039151	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51856.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.0	13.5	4.0	5.5	1.0	6.0
Merged-chr17-48192979-1	chr17	48192479	48193479	+	571.0	f0_balb.idr	Intergenic	Intergenic	-25722.0	NM_178796	328830.0	Mm.470939	NM_178796	ENSMUSG00000043939	A530064D06Rik	Trem4|pdctrem	RIKEN cDNA A530064D06 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-16969276-2	chr11	16968776	16969776	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	17866.0	NM_176982	319701.0	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-33217527-2	chr14	33217027	33218027	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	704.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83298361-1	chr11	83297861	83298861	+	571.0	f0_balb.idr	exon (NM_134025, exon 2 of 4)	exon (NM_134025, exon 2 of 4)	616.0	NM_134025	103737.0	Mm.102205	NM_134025	ENSMUSG00000018733	Pex12	AI451906	peroxisomal biogenesis factor 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89996315-2	chr3	89995815	89996815	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282032, intron 2 of 5)	intron (NM_001282032, intron 2 of 5)	1788.0	NM_001310681	23897.0	Mm.256035	NM_011826	ENSMUSG00000027944	Hax1	HAX-1|HSP1BP-1|Hs1bp1|SIG-111|Silg111|mHAX-1s	HCLS1 associated X-1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70738769-1	chr17	70738269	70739269	+	571.0	f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	108008.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.0	0.0	0.0	1.5	1.0	1.0
Merged-chr18-61101579-1	chr18	61101079	61102079	+	571.0	f0_balb.idr	Intergenic	L1MB5|LINE|L1	-3993.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-5252498-2	chr16	5251998	5252998	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027446, intron 2 of 7)	intron (NM_027446, intron 2 of 7)	3458.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167386091-2	chr2	167385591	167386591	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35619.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120535744-2	chr5	120535244	120536244	+	571.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145853, exon 28 of 28)	3' UTR (NM_145853, exon 28 of 28)	24552.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr10-57792190-2	chr10	57791690	57792690	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-2354.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129504057-1	chr4	129503557	129504557	+	571.0	f0_balb.idr	Intergenic	Intergenic	-9524.0	NM_010807	17357.0	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	4.0	3.0	1.5	8.5	1.5	0.5
Merged-chr9-21496535-2	chr9	21496035	21497035	+	571.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029585)	promoter-TSS (NR_029585)	29.0	NR_029585	387194.0		NR_029585	ENSMUSG00000065547	Mir199a-1	Mirn199|Mirn199a-1|mir-199a-1	microRNA 199a-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151579978-1	chr1	151579478	151580478	+	571.0	f0_balb.idr	intron (NM_022018, intron 1 of 13)	G-rich|Low_complexity|Low_complexity	8605.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-37694418-1	chr18	37693918	37694918	+	571.0	f0_balb.idr	promoter-TSS (NM_033588)	promoter-TSS (NM_033588)	-83.0	NM_033588	93713.0	Mm.247203	NM_033588	ENSMUSG00000103567	Pcdhga5	-	protocadherin gamma subfamily A, 5	protein-coding	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35443802-2	chr17	35443302	35444302	+	571.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001201460)	TTS (NM_001201460)	4635.0	NM_001201460	110558.0	Mm.431282	NM_001201460		H2-Q9	H-2Q9|Ped|Qa-2|Qa-9|Qa9	histocompatibility 2, Q region locus 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114006311-1	chr5	114005811	114006811	+	571.0	f0_balb.idr	intron (NM_001286396, intron 1 of 10)	intron (NM_001286396, intron 1 of 10)	1503.0	NM_001286396	13142.0	Mm.20115	NM_010018	ENSMUSG00000042096	Dao	AI987963|DAAO|DAMOX|Dao-1|Dao1	D-amino acid oxidase	protein-coding	13.5	6.0	2.5	0.0	3.0	0.5
Merged-chr4-147430469-2	chr4	147429969	147430969	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	RMER15|LTR|ERVL	-122808.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-169790941-2	chr2	169790436	169791436	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	157290.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	3.5	0.0	4.0	0.0	0.0	2.5
Merged-chr11-54201447-1	chr11	54200947	54201947	+	571.0	f0_balb.idr	intron (NR_045506, intron 2 of 2)	intron (NR_045506, intron 2 of 2)	11841.0	NR_045506	71056.0	Mm.56332	NR_045506	ENSMUSG00000086209	4933405E24Rik	-	RIKEN cDNA 4933405E24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21757008-1	chr14	21756508	21757508	+	571.0	f0_c57.idr	intron (NM_001359953, intron 1 of 5)	B4A|SINE|B4	5456.0	NM_001359953	67630.0	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	27.0	30.5	17.5	25.0	29.0	9.5
Merged-chr16-24627178-2	chr16	24626678	24627678	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-94677.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45639139-1	chr17	45638639	45639639	+	571.0	f1_balb.idr	exon (NM_001013767, exon 10 of 22)	exon (NM_001013767, exon 10 of 22)	20170.0	NM_001013767	268958.0	Mm.426026	NM_001013767	ENSMUSG00000058626	Capn11	-	calpain 11	protein-coding	1.0	0.0	0.0	0.0	2.5	1.5
Merged-chr7-121754961-1	chr7	121754461	121755461	+	571.0	f0_balb.idr	intron (NM_011326, intron 6 of 12)	intron (NM_011326, intron 6 of 12)	20482.0	NM_011326	20278.0	Mm.35247	NM_011326	ENSMUSG00000000216	Scnn1g	SCNEG	sodium channel, nonvoltage-gated 1 gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83433456-1	chr15	83432956	83433956	+	571.0	f0_balb.idr	promoter-TSS (NM_011862)	promoter-TSS (NM_011862)	-606.0	NM_001159510	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35229262-1	chr17	35228762	35229762	+	571.0	f1_balb.idr	intron (NM_010909, intron 2 of 3)	(CA)n|Simple_repeat|Simple_repeat	-5748.0	NM_001347351	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	2.0	1.5	5.0	0.0	0.0	2.0
Merged-chr2-60904209-2	chr2	60903709	60904709	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-22771.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139285465-1	chr4	139284965	139285965	+	571.0	f1_balb.idr	intron (NM_001037761, intron 6 of 9)	intron (NM_001037761, intron 6 of 9)	25243.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	4.0	0.0	1.5	2.0	7.0	6.0
Merged-chr7-128070173-2	chr7	128069673	128070673	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008401, intron 3 of 29)	B1_Mur1|SINE|Alu	7533.0	NM_008401	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-82145281-2	chr13	82144781	82145781	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	362034.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138061905-2	chr1	138061405	138062405	+	571.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011210)	TTS (NM_011210)	95266.0	NR_029820	723890.0		NR_029820	ENSMUSG00000065458	Mir181b-1	Mirn181b-1|mir-181b-1	microRNA 181b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86747343-2	chr11	86746843	86747843	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	10224.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139617404-1	chr4	139616904	139617904	+	571.0	f1_balb.idr	3' UTR (NM_183148, exon 12 of 12)	3' UTR (NM_183148, exon 12 of 12)	-5490.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	32.5	63.0	62.0	24.0	68.5	46.0
Merged-chr1-106764851-1	chr1	106764351	106765351	+	571.0	f1_c57bl6.idr	Intergenic	Intergenic	-5109.0	NM_001316750	70750.0	Mm.458911	NM_027534	ENSMUSG00000009905	Kdsr	6330410P18Rik|9430079B08Rik|Fvt1	3-ketodihydrosphingosine reductase	protein-coding	0.0	0.0	5.0	0.0	0.0	3.0
Merged-chr17-84719304-1	chr17	84718804	84719804	+	570.75	f0_balb.idr	intron (NM_028233, intron 30 of 37)	intron (NM_028233, intron 30 of 37)	36183.0	NM_026180	67470.0	Mm.26581	NM_026180	ENSMUSG00000024254	Abcg8	1300003C16Rik|AI114946|sterolin-2	ATP binding cassette subfamily G member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18066512-2	chr2	18066012	18067012	+	570.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010804, intron 2 of 22)	B1_Mur1|SINE|Alu	1927.0	NM_001252561	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173939488-2	chr1	173938990	173939990	+	570.75	f0_c57.idr|f1_balb.idr	intron (NM_001302649, intron 2 of 9)	intron (NM_001302649, intron 2 of 9)	3002.0	NM_001302649	15950.0	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Ifi203a|Ifi203b|Mndal	interferon activated gene 203	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-36054723-3	chr12	36054199	36055199	+	570.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12221.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	3.0	0.0	0.0	0.5	2.5	10.5
Merged-chr14-20179238-3	chr14	20178731	20179731	+	570.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021542, intron 1 of 4)	intron (NM_021542, intron 1 of 4)	2551.0	NM_021542	16529.0	Mm.68998	NM_021542	ENSMUSG00000023243	Kcnk5	KCNK5b|TASK-2	potassium channel, subfamily K, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69197380-3	chr11	69196848	69197848	+	570.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009661, intron 2 of 13)	intron (NM_009661, intron 2 of 13)	495.0	NM_009661	11688.0	Mm.289672	NM_009661	ENSMUSG00000020891	Alox8	15-LOX-2|15-LOX-B|8-LOX|8S-LOX|Alox15b	arachidonate 8-lipoxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128726545-3	chr2	128726020	128727020	+	570.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	27605.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8762386-3	chr3	8761887	8762887	+	570.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95349.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69047337-2	chr11	69046837	69047837	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011496, intron 1 of 7)	intron (NM_011496, intron 1 of 7)	1700.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49202383-2	chr11	49201883	49202883	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1117.0	NM_001024846	22720.0	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32801944-2	chr2	32801444	32802444	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113569, intron 14 of 19)	intron (NM_001113569, intron 14 of 19)	-17539.0	NM_025619	227736.0	Mm.441499	NM_025619	ENSMUSG00000038987	Cfap157	1700019L03Rik	cilia and flagella associated protein 157	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65283490-2	chr9	65282990	65283990	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10770.0	NM_011802	270166.0	Mm.30088	NM_011802	ENSMUSG00000015357	Clpx	AU014732|E330029I21	caseinolytic mitochondrial matrix peptidase chaperone subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10948308-2	chr16	10947808	10948808	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-33511.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29405612-2	chr2	29405112	29406112	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290490, intron 3 of 5)	intron (NM_001290490, intron 3 of 5)	27098.0	NM_001290490	68975.0	Mm.330109	NM_026896	ENSMUSG00000026799	Med27	1500015J03Rik|2310042P07Rik|AA682045|Crsp8|D2Ertd434e	mediator complex subunit 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-104309289-2	chr13	104308789	104309789	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_136938, intron 4 of 26)	RLTR28|LTR|ERVL	21454.0	NM_001081020	108154.0	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30914942-2	chr5	30914442	30915442	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133918, intron 1 of 7)	intron (NM_133918, intron 1 of 7)	1156.0	NM_133918	100952.0	Mm.286375	NM_133918	ENSMUSG00000029163	Emilin1	5830419M17Rik|AW229038|BB105748|EMILIN-1|gp115	elastin microfibril interfacer 1	protein-coding	2.0	4.5	5.0	3.5	2.5	0.0
Merged-chr2-153136977-2	chr2	153136477	153137477	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 9 of 12)	intron (NM_001172117, intron 9 of 12)	-24324.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20656496-2	chr14	20655996	20656996	+	570.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021508)	promoter-TSS (NM_021508)	44.0	NM_021508	59011.0	Mm.439911	NM_021508	ENSMUSG00000068697	Myoz1	2310001N11Rik|AV090278|FATZ|Myoz	myozenin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47630933-2	chr17	47630433	47631433	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198421, intron 1 of 6)	intron (NM_198421, intron 1 of 6)	243.0	NM_198421	224836.0	Mm.59393	NM_198421	ENSMUSG00000090115	Usp49	C330046L10Rik|Gm545	ubiquitin specific peptidase 49	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6354602-2	chr19	6354102	6355102	+	570.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_117093, exon 31 of 31)	non-coding (NR_117093, exon 31 of 31)	8122.0	NR_105955	102465598.0		NR_105955	ENSMUSG00000099230	Mir6989	Gm27885|mmu-mir-6989	microRNA 6989	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86199556-2	chr15	86199056	86200056	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13415.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81059236-2	chr10	81058736	81059736	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358550, intron 1 of 11)	B1_Mur2|SINE|Alu	940.0	NM_001358549	52551.0	Mm.30068	NM_024499	ENSMUSG00000004937	Sgta	5330427H01Rik|AI194281|D10Ertd190e|Sgt|Stg	small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-76246595-2	chr8	76246095	76247095	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	654026.0	NR_028579	102640923.0	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	-	predicted gene 10649	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-18567534-2	chr15	18567034	18568034	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	-197907.0	NR_045711	70886.0	Mm.399021	NR_045711	ENSMUSG00000098150	4921515E04Rik	-	RIKEN cDNA 4921515E04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61300420-2	chr9	61299920	61300920	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-6611.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-49038618-2	chr4	49038118	49039118	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-20844.0	NM_178756	272031.0	Mm.299460	NM_178756	ENSMUSG00000063446	Plppr1	E130309F12Rik|Lppr1|PRG-3|mKIAA4247	phospholipid phosphatase related 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94734165-2	chr8	94733665	94734665	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11519.0	NM_009137	20299.0	Mm.12895	NM_009137	ENSMUSG00000031779	Ccl22	ABCD-1|DCBCK|MDC|Scya22	chemokine (C-C motif) ligand 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-85873624-2	chr15	85873124	85874124	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013882, intron 7 of 10)	intron (NM_013882, intron 7 of 10)	-5703.0	NM_028063	72026.0	Mm.158211	NM_028063	ENSMUSG00000022386	Trmu	1110005N20Rik|1600025P05Rik|AI314320|Trmt1	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99097988-2	chr15	99097488	99098488	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1496.0	NM_176835	72778.0	Mm.30544	NM_176835	ENSMUSG00000038009	Dnajc22	2810451A06Rik|AI506245	DnaJ heat shock protein family (Hsp40) member C22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-89156907-2	chr18	89156407	89157407	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-40520.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-80258897-2	chr1	80258397	80259397	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44953.0	NM_173425	241128.0	Mm.145511	NM_173425	ENSMUSG00000043230	Fam124b	A830043J08Rik	family with sequence similarity 124, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3642861-2	chr7	3642362	3643362	+	570.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027328)	TTS (NM_027328)	-2407.0	NM_146176	232791.0	Mm.358731	NM_146176	ENSMUSG00000035632	Cnot3	A930039N10Rik	CCR4-NOT transcription complex, subunit 3	protein-coding	10.5	18.5	15.5	23.5	6.5	18.0
Merged-chr2-33139451-2	chr2	33138951	33139951	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290570, intron 16 of 16)	intron (NM_001290570, intron 16 of 16)	-8015.0	NM_001355201	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8896354-2	chr19	8895854	8896854	+	570.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_176843, exon 2 of 2)	exon (NM_176843, exon 2 of 2)	-1703.0	NM_001293621	14376.0	Mm.3196	NM_008060	ENSMUSG00000071650	Ganab	AU042638|G2an|GluII|mKIAA0088	alpha glucosidase 2 alpha neutral subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129362498-2	chr6	129361998	129362998	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177686, intron 5 of 5)	MLTR11A|LTR|ERVK	12254.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125275487-2	chr6	125274987	125275987	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9962.0	NR_015527	73870.0	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	1.0	12.0	2.0	1.5	0.0	3.5
Merged-chr1-86510505-2	chr1	86510005	86511005	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16052.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-117639554-2	chr12	117639054	117640054	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 9 of 27)	intron (NM_175930, intron 9 of 27)	123075.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142506690-2	chr7	142506190	142507190	+	570.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033261)	promoter-TSS (NR_033261)	81.0	NR_033261	677289.0	Mm.350054	NR_033261	ENSMUSG00000043795	Prr33	Gm14492	proline rich 33	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88722331-2	chr5	88721831	88722831	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026735, intron 1 of 5)	intron (NM_026735, intron 1 of 5)	1460.0	NM_026735	68473.0	Mm.35764	NM_026735	ENSMUSG00000006262	Mob1b	1110003E08Rik|AU015450|B230364F10|Mobkl1a	MOB kinase activator 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59330746-2	chr11	59330246	59331246	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139298, intron 3 of 3)	intron (NM_139298, intron 3 of 3)	23816.0	NM_139298	216795.0	Mm.218794	NM_139298	ENSMUSG00000000126	Wnt9a	Wnt14	wingless-type MMTV integration site family, member 9A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102220728-2	chr11	102220228	102221228	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001284248, intron 3 of 28)	intron (NM_001284248, intron 3 of 28)	9422.0	NR_106179	102465892.0		NR_106179	ENSMUSG00000098863	Mir8101	Gm27705|mmu-mir-8101	microRNA 8101	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-84627291-1	chr16	84626791	84627791	+	570.5	f0_c57.idr	Intergenic	Intergenic	-52498.0	NR_040537	78023.0	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	0.0	0.0	2.0	0.0	0.0	0.5
Merged-chr7-83640847-2	chr7	83640347	83641347	+	570.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023377, exon 6 of 6)	3' UTR (NM_023377, exon 6 of 6)	8830.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31119569-2	chr6	31119069	31120069	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-56476.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-19014637-2	chr17	19014137	19015137	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-38856.0	NM_001104550	224552.0	Mm.469860	NM_001104550	ENSMUSG00000096717	Vmn2r98	EG224552	vomeronasal 2, receptor 98	protein-coding	3.5	0.0	0.0	2.0	3.0	0.0
Merged-chr7-130944504-2	chr7	130944004	130945004	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019564, intron 1 of 8)	MIRc|SINE|MIR	8301.0	NM_019564	56213.0	Mm.30156	NM_019564	ENSMUSG00000006205	Htra1	AI429470|HTRA|L56|Prss11|RSPP11	HtrA serine peptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80793216-2	chr10	80792716	80793716	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199322, intron 27 of 27)	intron (NM_199322, intron 27 of 27)	5410.0	NM_023900	78670.0	Mm.41479	NM_023900	ENSMUSG00000035278	Plekhj1	9530063M10Rik	pleckstrin homology domain containing, family J member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-15243239-2	chr3	15242739	15243739	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89063.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106794102-2	chr1	106793602	106794602	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009190, intron 1 of 10)	intron (NM_009190, intron 1 of 10)	2623.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-125382752-2	chr10	125382252	125383252	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53789.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-92059784-2	chr17	92059284	92060284	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-966982.0	NM_020252	18189.0	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	1.5	12.5	1.0	1.5	1.0	0.0
Merged-chr13-81239045-2	chr13	81238545	81239545	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 85 of 89)	intron (NM_054053, intron 85 of 89)	274971.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95676603-2	chr10	95676103	95677103	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-112457.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80079200-2	chr15	80078700	80079700	+	570.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028282)	promoter-TSS (NR_028282)	-621.0	NR_028282	100302601.0		NR_028282	ENSMUSG00000077734	Snord83b	MBII-10	small nucleolar RNA, C/D box 83B	snoRNA	8.0	5.0	16.5	8.0	5.0	16.5
Merged-chr19-16333859-2	chr19	16333359	16334359	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 4 of 6)	B4A|SINE|B4	-18855.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54440394-2	chr11	54439894	54440894	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173753, intron 1 of 17)	(TC)n|Simple_repeat|Simple_repeat	2215.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24794000-2	chr13	24793500	24794500	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-7657.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-64550863-2	chr2	64550363	64551363	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-452825.0	NM_001267847	60344.0	Mm.130769	NM_021716	ENSMUSG00000075324	Fign	fi|fidget	fidgetin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-39270808-2	chr12	39270308	39271308	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	487097.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	2.0	0.0	1.5	1.0	0.0	2.0
Merged-chr8-117541970-2	chr8	117541470	117542470	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 2 of 32)	intron (NM_172285, intron 2 of 32)	43695.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-113218516-2	chr10	113218016	113219016	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-289490.0	NM_001033474	382423.0	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132	ataxin 7-like 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19686212-2	chr7	19685712	19686712	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-4752.0	NM_001309799	105886299.0	Mm.28394	NM_001309799	ENSMUSG00000109350	Gm44805	Apoc4-apoc2	predicted gene 44805	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88319498-2	chr8	88319000	88320000	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037724, intron 16 of 27)	intron (NM_001037724, intron 16 of 27)	25296.0	NM_001037724	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	2.0	12.0	1.5	4.5	3.0	5.5
Merged-chr11-102289952-2	chr11	102289452	102290452	+	570.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001302506)	TTS (NM_001302506)	5013.0	NM_001302505	72053.0	Mm.101274	NM_028076	ENSMUSG00000034757	Tmub2	2010008E23Rik	transmembrane and ubiquitin-like domain containing 2	protein-coding	0.0	5.5	1.0	0.0	3.5	2.0
Merged-chr7-123296344-2	chr7	123295844	123296844	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 15 of 19)	intron (NM_001316713, intron 15 of 19)	73571.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-170228445-2	chr2	170227945	170228945	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85770.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-56682738-2	chr8	56682238	56683238	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131604.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	0.0	1.0	0.0	0.0	6.0	0.0
Merged-chr14-25747086-2	chr14	25746586	25747586	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 2 of 3)	intron (NM_001101433, intron 2 of 3)	21770.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70963723-3	chr14	70963225	70964225	+	570.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	73618.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	9.5	34.5	28.0	23.5	23.5	13.5
Merged-chr12-3423393-2	chr12	3422893	3423893	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_030694, intron 1 of 2)	Lx8|LINE|L1	3354.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61469700-2	chr10	61469200	61470200	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-6133.0	NM_153542	216011.0	Mm.136116	NM_153542	ENSMUSG00000037151	Lrrc20	BC036304	leucine rich repeat containing 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150567177-1	chr4	150566677	150567677	+	570.5	f1_balb.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	84997.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	11.0	24.5	24.5	19.0	14.5	13.5
Merged-chr1-87683905-2	chr1	87683405	87684405	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 9 of 26)	intron (NM_001110192, intron 9 of 26)	63593.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115266022-2	chr11	115265522	115266522	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010350, intron 3 of 14)	intron (NM_010350, intron 3 of 14)	1221.0	NM_010350	14813.0	Mm.39090	NM_010350	ENSMUSG00000020734	Grin2c	GluN2C|NMDAR2C|NR2C	glutamate receptor, ionotropic, NMDA2C (epsilon 3)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106357785-2	chr9	106357285	106358285	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10847.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	0.0	3.5	2.5	0.0	17.0	0.5
Merged-chr10-128567815-2	chr10	128567315	128568315	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1881.0	NM_011119	18813.0	Mm.4742	NM_011119	ENSMUSG00000025364	Pa2g4	38kDa|AA672939|Ebp1|Plfap	proliferation-associated 2G4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21630812-2	chr9	21630312	21631312	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357764, intron 1 of 34)	B2_Mm2|SINE|B2	14643.0	NM_001174078	20586.0	Mm.286593	NM_011417	ENSMUSG00000032187	Smarca4	BAF190A|Brg1|HP1-BP72|SNF2beta|SW1/SNF|b2b508.1Clo|b2b692Clo	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34200496-2	chr13	34199996	34200996	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 5 of 10)	intron (NM_001033167, intron 5 of 10)	37532.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	24.5	18.0	28.5	14.0	6.0	10.5
Merged-chr13-87874576-2	chr13	87874076	87875076	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	-946896.0	NM_010103	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56620254-2	chr17	56619754	56620754	+	570.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_028782, exon 6 of 18)	exon (NM_028782, exon 6 of 18)	6649.0	NM_028782	74142.0	Mm.329136	NM_028782	ENSMUSG00000041168	Lonp1	1200017E13Rik|LON|Prss15	lon peptidase 1, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-105069400-2	chr13	105068900	105069900	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12722.0	NM_025751	66763.0	Mm.109093	NM_025751	ENSMUSG00000021718	4933425L06Rik	-	RIKEN cDNA 4933425L06 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-108607757-2	chr2	108607257	108608257	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	670533.0	NM_029790	76894.0	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54778853-1	chr14	54778353	54779353	+	570.5	f1_balb.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	3033.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	14.5	49.5	15.0	2.5	14.0	16.5
Merged-chr2-53004263-2	chr2	53003763	53004763	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	RLTR14_RN|LTR|ERV1	146395.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118819627-2	chr10	118819125	118820125	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	49278.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5524775-2	chr11	5524275	5525275	+	570.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001271730, exon 6 of 6)	exon (NM_001271730, exon 6 of 6)	4134.0	NM_001271730	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-85601532-2	chr3	85601032	85602032	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144896, intron 2 of 12)	intron (NM_144896, intron 2 of 12)	27403.0	NM_144896	229487.0	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100712043-2	chr11	100711543	100712543	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038010, intron 1 of 17)	intron (NM_001038010, intron 1 of 17)	424.0	NM_001038010	14534.0	Mm.218837	NM_020004	ENSMUSG00000020918	Kat2a	1110051E14Rik|AW212720|Gcn5|Gcn5l2|mmGCN5	K(lysine) acetyltransferase 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4682411-2	chr16	4681911	4682911	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1659.0	NM_023646	83945.0	Mm.248337	NM_023646	ENSMUSG00000004069	Dnaja3	1200003J13Rik|1810053A11Rik|C81173|Tid-1|Tid1l	DnaJ heat shock protein family (Hsp40) member A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63386990-2	chr4	63386490	63387490	+	570.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 5 of 21)	intron (NM_001045514, intron 5 of 21)	11250.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-9674834-3	chr10	9674352	9675352	+	570.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177271, exon 1 of 2)	exon (NM_177271, exon 1 of 2)	356.0	NM_177271	320825.0	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding	0.0	0.0	1.5	1.0	0.0	1.0
Merged-chr2-91459291-3	chr2	91458790	91459790	+	570.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 1 of 37)	intron (NM_172668, intron 1 of 37)	1759.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-67233197-2	chr14	67232526	67233526	+	570.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276387)	promoter-TSS (NM_001276387)	-266.0	NM_010095	13592.0	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	0.0	0.0	0.0	6.0	12.0	0.0
Merged-chr6-7605270-2	chr6	7604802	7605802	+	570.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	50241.0	NM_001311060	21333.0	Mm.1440	NM_009311	ENSMUSG00000061762	Tac1	4930528L02Rik|NK-1|NK1|Nkna|PPT-A|PPTA|SP	tachykinin 1	protein-coding	0.0	0.0	2.0	0.0	0.0	1.0
Merged-chr13-64448192-1	chr13	64447692	64448692	+	570.25	f0_balb.idr	Intergenic	Intergenic	15639.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	0.0	15.0	1.0	11.5	2.5	1.5
Merged-chr9-123933342-2	chr9	123932842	123933842	+	570.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35350.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90201234-2	chr9	90200734	90201734	+	570.025024	f1_balb.idr|f1_c57bl6.idr	TTS (NM_194334)	TTS (NM_194334)	38256.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114259747-2	chr6	114259247	114260247	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22888.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-56439106-2	chr8	56438606	56439606	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	45862.0	NR_131020	75123.0	Mm.72666	NR_131020	ENSMUSG00000110310	4930518J21Rik	-	RIKEN cDNA 4930518J21 gene	ncRNA	1.5	3.0	4.5	11.5	11.0	3.0
Merged-chr12-34586575-1	chr12	34586075	34587075	+	570.0	f0_balb.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-57686.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr2-93189622-2	chr2	93189122	93190122	+	570.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_151503)	TTS (NR_151503)	2074.0	NM_001025246	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84137561-2	chr17	84137061	84138061	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50386.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101972253-2	chr5	101971739	101972739	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 4 of 66)	intron (NM_172882, intron 4 of 66)	97682.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	12.0	31.0	28.5	14.0	45.0	16.5
Merged-chr2-122349498-1	chr2	122348998	122349998	+	570.0	f1_c57bl6.idr	exon (NM_001013829, exon 6 of 6)	exon (NM_001013829, exon 6 of 6)	19420.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	0.0	1.5	0.0	2.0	0.0	0.0
Merged-chr10-31888599-2	chr10	31888105	31889105	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013411, intron 4 of 6)	L1_Mus3|LINE|L1	-278880.0	NM_001146349	268291.0	Mm.295212	NM_001146349	ENSMUSG00000063760	Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-10034159-2	chr9	10033659	10034659	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033359, intron 4 of 20)	intron (NM_001033359, intron 4 of 20)	139728.0	NR_105745	102466147.0		NR_105745	ENSMUSG00000098408	Mir6237	Gm27411|mmu-mir-6237	microRNA 6237	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6081361-1	chr2	6080861	6081861	+	570.0	f0_balb.idr	Intergenic	MER63D|DNA|hAT-Blackjack	48824.0	NM_144883	227545.0	Mm.133542	NM_144883	ENSMUSG00000045319	Proser2	5430407P10Rik|AU067770	proline and serine rich 2	protein-coding	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-59079482-1	chr3	59078982	59079982	+	570.0	f0_balb.idr	intron (NM_177855, intron 10 of 43)	intron (NM_177855, intron 10 of 43)	22339.0	NM_173398	229323.0	Mm.123648	NM_173398	ENSMUSG00000050075	Gpr171	A630006E05|F730001G15Rik|H963	G protein-coupled receptor 171	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80656435-2	chr18	80655935	80656935	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 6 of 9)	intron (NM_198429, intron 6 of 9)	51738.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-115898809-2	chr13	115898309	115899309	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	410879.0	NM_021459	16392.0	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	0.0	4.0	0.5	0.0	0.0	0.0
Merged-chr3-150071054-2	chr3	150070554	150071554	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	796317.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120368529-2	chr11	120368029	120369029	+	570.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172802)	TTS (NM_172802)	6995.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	0.0	0.0	3.0	0.0	0.0	3.0
Merged-chr1-184613841-2	chr1	184613341	184614341	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-56150.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-33851613-1	chr14	33851113	33852113	+	570.0	f0_balb.idr	Intergenic	Intergenic	-40330.0	NR_131113	218902.0	Mm.107791	NR_131113	ENSMUSG00000115751	4930503F20Rik	4930453C15	RIKEN cDNA 4930503F20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69082393-2	chr8	69081893	69082893	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153054, intron 1 of 16)	B3A|SINE|B2	-6343.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	0.0	0.0	0.0	2.5	4.0	3.0
Merged-chr6-54948356-1	chr6	54947856	54948856	+	570.0	f0_c57.idr	intron (NM_001171007, intron 2 of 11)	intron (NM_001171007, intron 2 of 11)	23305.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-59426270-1	chr6	59425770	59426770	+	570.0	f1_balb.idr	promoter-TSS (NM_183183)	promoter-TSS (NM_183183)	20.0	NM_183183	243385.0	Mm.138080	NM_183183	ENSMUSG00000045441	Gprin3	C030038J10Rik|C730021L23	GPRIN family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-30693765-1	chr12	30693265	30694265	+	570.0	f1_balb.idr	Intergenic	Intergenic	109322.0	NM_172049	211986.0	Mm.34035	NM_172049	ENSMUSG00000043061	Tmem18	BC024093	transmembrane protein 18	protein-coding	0.0	0.0	1.0	0.0	0.0	2.5
Merged-chr11-75131507-1	chr11	75131007	75132007	+	570.0	f0_balb.idr	intron (NM_001002764, intron 13 of 18)	intron (NM_001002764, intron 13 of 18)	36645.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5560308-1	chr17	5559808	5560808	+	570.0	f0_balb.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	67708.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103238210-2	chr15	103237710	103238710	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358950, intron 1 of 4)	intron (NM_001358950, intron 1 of 4)	1642.0	NM_001358950	12419.0	Mm.262059	NM_007626	ENSMUSG00000009575	Cbx5	2610029O15Rik|C75991|HP1|Hp1a|Hp1alpha	chromobox 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16387254-1	chr7	16386754	16387754	+	570.0	f1_c57bl6.idr	intron (NM_019748, intron 1 of 8)	intron (NM_019748, intron 1 of 8)	642.0	NM_001285892	56459.0	Mm.258530	NM_019748	ENSMUSG00000052833	Sae1	2400010M20Rik|2610044L12Rik|AL033372|AOS1|AW743391|D7Ertd177e|HSPC140|Sua1|Uble1a	SUMO1 activating enzyme subunit 1	protein-coding	0.0	0.0	1.0	0.0	6.0	0.0
Merged-chr5-139179081-2	chr5	139178581	139179581	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081265, intron 10 of 12)	intron (NM_001081265, intron 10 of 12)	-21556.0	NM_001256115	77053.0	Mm.210845	NM_024451	ENSMUSG00000036817	Sun1	4632417G13Rik|5730434D03Rik|Unc84a|mKIAA0810	Sad1 and UNC84 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-47084210-2	chr7	47083710	47084710	+	570.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106023)	promoter-TSS (NR_106023)	-986.0	NR_106023	102465639.0		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96064592-1	chr11	96064092	96065092	+	570.0	f0_balb.idr	intron (NM_172300, intron 1 of 6)	intron (NM_172300, intron 1 of 6)	772.0	NM_172300	268470.0	Mm.38802	NM_172300	ENSMUSG00000014349	Ube2z	AW049199|C030047H17Rik|D11Moh35	ubiquitin-conjugating enzyme E2Z	protein-coding	7.5	12.5	4.0	7.5	12.5	4.5
Merged-chr11-115602535-1	chr11	115602035	115603035	+	570.0	f1_balb.idr	intron (NM_173048, intron 1 of 16)	intron (NM_173048, intron 1 of 16)	1381.0	NM_001252067	260302.0	Mm.119479	NM_173048	ENSMUSG00000020740	Gga3	C230037M19Rik|mKIAA0154	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding	38.5	34.0	20.0	32.0	36.5	52.0
Merged-chr2-120688118-1	chr2	120687618	120688618	+	570.0	f1_balb.idr	Intergenic	Intergenic	43399.0	NM_026891	68968.0	Mm.2289	NM_026891	ENSMUSG00000027284	Cdan1	1500015A01Rik|AI448026|AW492297|CDA-I|CDA1|CDAI	congenital dyserythropoietic anemia, type I (human)	protein-coding	1.0	1.0	2.0	0.0	0.0	4.0
Merged-chr6-135160222-1	chr6	135159722	135160722	+	570.0	f0_balb.idr	intron (NM_013546, intron 1 of 3)	ID_B1|SINE|B4	7993.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	13.0	3.0	22.0	3.0	10.5	9.5
Merged-chr13-53376770-1	chr13	53376270	53377270	+	570.0	f1_c57bl6.idr	intron (NM_009269, intron 1 of 14)	intron (NM_009269, intron 1 of 14)	591.0	NM_009269	268656.0	Mm.240336	NM_009269	ENSMUSG00000021468	Sptlc1	AW552086|C77762|E030036H05|Lcb1|SPT1	serine palmitoyltransferase, long chain base subunit 1	protein-coding	19.5	28.5	34.5	14.5	38.0	45.5
Merged-chr8-120670708-1	chr8	120670208	120671208	+	570.0	f1_c57bl6.idr	intron (NM_009941, intron 2 of 4)	intron (NM_009941, intron 2 of 4)	2388.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-54045450-1	chr19	54044950	54045950	+	570.0	f1_c57bl6.idr	5' UTR (NM_007417, exon 1 of 1)	5' UTR (NM_007417, exon 1 of 1)	268.0	NM_007417	11551.0	Mm.235195	NM_007417	ENSMUSG00000033717	Adra2a	AW122659|Adra-2|Adra-2a|alpha(2A)AR|alpha2-C10|alpha2A|alpha2A-AR	adrenergic receptor, alpha 2a	protein-coding	0.0	0.0	5.0	0.0	0.0	0.0
Merged-chr8-33668829-1	chr8	33668329	33669329	+	570.0	f1_c57bl6.idr	intron (NM_010344, intron 1 of 12)	L1_Mus2|LINE|L1	15591.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	26.0	16.0	23.0	6.5	3.0	3.5
Merged-chr5-55629448-2	chr5	55628948	55629948	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB-int|LTR|ERVL-MaLR	1279456.0	NR_038045	330086.0	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13	predicted gene 10440	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-146854514-1	chr2	146854014	146855014	+	570.0	f0_balb.idr	Intergenic	Intergenic	-1375.0	NM_001033298	228730.0	Mm.292352	NM_001033298	ENSMUSG00000074749	Kiz	Gm114|Ncrna00153|Plk1s1	kizuna centrosomal protein	protein-coding	4.5	4.5	8.5	1.5	3.0	11.5
Merged-chr5-112292115-1	chr5	112291615	112292615	+	570.0	f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	15424.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0.0	0.5	3.0	4.5	8.5	3.5
Merged-chr7-99988952-1	chr7	99988452	99989452	+	570.0	f1_balb.idr	Intergenic	Intergenic	-8494.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	0.0	1.5	0.0	2.0	0.0	0.5
Merged-chr9-110676257-1	chr9	110675757	110676757	+	570.0	f0_c57.idr	intron (NM_028312, intron 1 of 6)	ID_B1|SINE|B4	19754.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53394644-1	chr4	53394144	53395144	+	570.0	f1_balb.idr	Intergenic	Intergenic	-45769.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67393110-1	chr18	67392610	67393610	+	570.0	f1_c57bl6.idr	intron (NM_026473, intron 3 of 3)	intron (NM_026473, intron 3 of 3)	2379.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	0.0	9.0	10.5	0.0	8.0	5.5
Merged-chr9-50857533-1	chr9	50857033	50858033	+	570.0	f1_balb.idr	intron (NM_001286553, intron 1 of 16)	intron (NM_001286553, intron 1 of 16)	609.0	NM_001286553	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	22.0	20.0	21.5	9.5	32.5	15.5
Merged-chr10-124083046-1	chr10	124082546	124083546	+	570.0	f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	-386028.0	NR_028310	75030.0	Mm.159403	NR_028310	ENSMUSG00000112364	4930503E24Rik	-	eukaryotic translation initiation factor 3, subunit I pseudogene	pseudo	0.0	0.0	0.5	0.0	0.0	1.5
Merged-chr11-70817048-1	chr11	70816548	70817548	+	570.0	f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4487.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	10.0	0.0	3.0	1.0	0.5	8.0
Merged-chr1-40480217-1	chr1	40479717	40480717	+	570.0	f0_balb.idr	intron (NM_001161842, intron 5 of 9)	intron (NM_001161842, intron 5 of 9)	14211.0	NM_008365	16182.0	Mm.253664	NM_008365	ENSMUSG00000026070	Il18r1	Il18ralpha|Il1rrp	interleukin 18 receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102930768-1	chr11	102930268	102931268	+	570.0	f0_balb.idr	Intergenic	RMER19B2|LTR|ERVK	-5644.0	NM_197959	70218.0	Mm.32084	NM_197959	ENSMUSG00000051378	Kif18b	3000004C01Rik	kinesin family member 18B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94189065-2	chr8	94188565	94189565	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9976.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50112114-2	chr11	50111614	50112614	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 7 of 7)	intron (NM_001290750, intron 7 of 7)	-19246.0	NM_001290759	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35252067-1	chr17	35251567	35252567	+	570.0	f1_c57bl6.idr	TTS (NR_106169)	TTS (NR_106169)	778.0	NR_106169	102465886.0		NR_106169	ENSMUSG00000098269	Mir8094	Gm27513|mmu-mir-8094	microRNA 8094	ncRNA	0.0	0.0	0.5	1.5	0.5	0.0
Merged-chr9-61384243-2	chr9	61383743	61384743	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083928, intron 4 of 19)	intron (NM_001083928, intron 4 of 19)	11877.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-178885812-2	chr2	178885312	178886312	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	455297.0	NM_198656	381409.0	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91710316-2	chr12	91709816	91710816	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	76120.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73891742-2	chr2	73891242	73892242	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025093, intron 1 of 14)	intron (NM_001025093, intron 1 of 14)	897.0	NM_001284371	11909.0	Mm.209903	NM_009715	ENSMUSG00000027104	Atf2	Atf-2|CRE-BP|Creb2|D130078H02Rik|D18875|Tg(Gzma-Klra1)7Wum|mXBP	activating transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101902476-2	chr7	101901976	101902976	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081679, intron 1 of 3)	intron (NM_001081679, intron 1 of 3)	1309.0	NM_001282088	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23513663-2	chr17	23513163	23514163	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-34066.0	NM_001104581	619788.0	Mm.469847	NM_001104581	ENSMUSG00000091407	Vmn2r117	EG619788|V2Rp6	vomeronasal 2, receptor 117	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85231332-1	chr1	85230832	85231832	+	570.0	f1_balb.idr	Intergenic	L1Md_F|LINE|L1	31721.0	NM_001081746	665378.0	Mm.440912	NM_001081746		Gm7609	EG665378	predicted pseudogene 7609	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43567498-2	chr17	43566998	43567998	+	570.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013737)	promoter-TSS (NM_013737)	-953.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	4.0	13.0	9.0	4.5	14.5	10.0
Merged-chr19-37499945-1	chr19	37499445	37500445	+	570.0	f1_balb.idr	Intergenic	Intergenic	34691.0	NR_131009	78640.0	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	6.0	11.0	6.0	5.0	0.0	2.0
Merged-chr17-10320753-2	chr17	10320253	10321253	+	570.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037588, exon 1 of 1)	non-coding (NR_037588, exon 1 of 1)	834.0	NR_037588	100526796.0	Mm.384135	NR_037588		Cahm	B930003M22Rik	colon adenocarcinoma hypermethylated RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118096993-2	chr10	118096493	118097493	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A1|LTR|ERVL-MaLR	-44794.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	94.0	255.5	180.5	138.5	188.0	201.0
Merged-chr1-44955789-2	chr1	44955289	44956289	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-210840.0	NR_040602	75066.0	Mm.416932	NR_040602	ENSMUSG00000101701	4930521E06Rik	-	RIKEN cDNA 4930521E06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41290251-2	chr19	41289751	41290751	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 13 of 16)	B3|SINE|B2	-26247.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135807526-2	chr5	135807026	135808026	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10580.0	NM_021403	58212.0	Mm.271230	NM_021403	ENSMUSG00000039860	Srrm3	2900083I11Rik|AB041661|SRm300-like|Srrm2l	serine/arginine repetitive matrix 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60368613-2	chr10	60368113	60369113	+	570.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001159572, exon 6 of 7)	exon (NM_001159572, exon 6 of 7)	21762.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34766550-1	chr8	34766050	34767050	+	570.0	f1_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	-41060.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	1.0	2.5	5.0	0.0	3.0	1.5
Merged-chr3-58507426-1	chr3	58506926	58507926	+	570.0	f1_c57bl6.idr	Intergenic	Intergenic	-18395.0	NM_001005509	229317.0	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	12.0	4.5	10.0	2.5	0.0	10.0
Merged-chr7-113134033-1	chr7	113133533	113134533	+	570.0	f0_balb.idr	intron (NR_045978, intron 2 of 5)	intron (NR_045978, intron 2 of 5)	7982.0	NR_045978	75239.0	Mm.381688	NR_045978	ENSMUSG00000110009	4930543E12Rik	4930545H14Rik	RIKEN cDNA 4930543E12 gene	ncRNA	1.0	11.5	0.5	0.0	1.5	0.0
Merged-chr2-5047148-2	chr2	5046648	5047648	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356487, intron 3 of 13)	intron (NM_001356487, intron 3 of 13)	16969.0	NM_181848	71648.0	Mm.116942	NM_181848	ENSMUSG00000026672	Optn	4930441O07Rik|FIP2|HYPL|NRP	optineurin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36644423-2	chr16	36643923	36644923	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	(CA)n|Simple_repeat|Simple_repeat	21654.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34762931-1	chr8	34762431	34763431	+	570.0	f0_c57.idr	Intergenic	Intergenic	-44679.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	2.5	6.0	3.0	0.0	4.0	0.0
Merged-chr9-89280498-2	chr9	89279998	89280998	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69114.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	1.5	0.0	0.0	1.5	0.0	0.0
Merged-chr3-10302550-2	chr3	10302050	10303050	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1367.0	NM_029310	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6522099-2	chr11	6521599	6522599	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1141.0	NM_178440	246177.0	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	6.0	1.5	2.5	2.0	5.0	6.5
Merged-chr11-69046554-2	chr11	69046054	69047054	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011496, intron 1 of 7)	intron (NM_011496, intron 1 of 7)	917.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-96921895-2	chr12	96921395	96922395	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-874673.0	NR_103800	69423.0	Mm.46121	NM_027076		1700019M22Rik	-	NFX-like protein	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-109641844-1	chr14	109641344	109642344	+	570.0	f0_balb.idr	Intergenic	Intergenic	-727605.0	NM_199065	76965.0	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181364905-1	chr2	181364405	181365405	+	570.0	f0_c57.idr	promoter-TSS (NM_144894)	promoter-TSS (NM_144894)	-26.0	NM_144894	229007.0	Mm.87720	NM_144894	ENSMUSG00000027582	Zgpat	1500006I01Rik|BC021513	zinc finger, CCCH-type with G patch domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88679312-1	chr10	88678812	88679812	+	570.0	f0_c57.idr	intron (NM_011461, intron 3 of 5)	B4A|SINE|B4	3711.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	6.5	19.0	7.5	3.5	20.5	9.0
Merged-chr17-69365255-2	chr17	69364755	69365755	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-17920.0	NM_001356283	22666.0	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87738192-1	chr16	87737692	87738692	+	570.0	f0_balb.idr	Intergenic	Intergenic	39238.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.0	2.5	1.0	0.0	0.5	1.0
Merged-chr11-99124138-1	chr11	99123638	99124638	+	570.0	f1_balb.idr	Intergenic	Intergenic	30939.0	NM_001301713	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	5.0	0.0	0.0	4.5	0.0	4.5
Merged-chr1-186580448-2	chr1	186579948	186580948	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21767.0	NR_131158	320449.0	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96555070-1	chr3	96554570	96555570	+	570.0	f1_balb.idr	TTS (NR_040409)	TTS (NR_040409)	-2887.0	NM_023719	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	8.0	10.5	2.5	3.5	5.0	6.0
Merged-chr2-144291403-2	chr2	144290903	144291903	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	20499.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-74696441-1	chr16	74695941	74696941	+	570.0	f1_c57bl6.idr	intron (NM_001358493, intron 1 of 28)	Lx9|LINE|L1	-284616.0	NM_175549	268902.0	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.5	14.5	5.0	0.0	3.0	1.0
Merged-chr5-146730067-2	chr5	146729567	146730567	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64889.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0.0	0.5	2.5	0.0	0.5	2.5
Merged-chr2-159731553-2	chr2	159731059	159732059	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MamRep38|DNA|hAT	-215782.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	7.5	2.0	7.5	7.0	2.0	5.0
Merged-chr13-21752586-2	chr13	21752086	21753086	+	570.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178183)	TTS (NM_178183)	1326.0	NM_178183	319169.0	Mm.370338	NM_178183	ENSMUSG00000063021	Hist1h2ak	-	histone cluster 1, H2ak	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108583335-2	chr9	108582835	108583835	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357465, intron 3 of 3)	intron (NM_001357465, intron 3 of 3)	-4665.0	NM_031392	83669.0	Mm.335454	NM_031392	ENSMUSG00000066357	Wdr6	mWDR6	WD repeat domain 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-118137576-2	chr4	118137076	118138076	+	570.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001161823, exon 22 of 22)	3' UTR (NM_001161823, exon 22 of 22)	-2630.0	NM_001161774	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr10-128272632-1	chr10	128272132	128273132	+	570.0	f1_c57bl6.idr	intron (NM_019963, intron 1 of 23)	Lx5c|LINE|L1	2134.0	NM_019963	20847.0	Mm.293120	NM_019963	ENSMUSG00000040033	Stat2	1600010G07Rik|AW496480	signal transducer and activator of transcription 2	protein-coding	13.0	7.0	6.5	3.5	8.5	5.0
Merged-chr2-29967994-2	chr2	29967494	29968494	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177668, intron 1 of 55)	intron (NM_001177668, intron 1 of 55)	2434.0	NM_001309460	20740.0	Mm.204969	NM_001076554	ENSMUSG00000057738	Sptan1	2610027H02Rik|Spna-2|Spna2	spectrin alpha, non-erythrocytic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114804221-1	chr5	114803721	114804721	+	570.0	f1_balb.idr	intron (NM_026718, intron 14 of 14)	intron (NM_026718, intron 14 of 14)	9755.0	NR_027818	66236.0	Mm.268546	NR_027817	ENSMUSG00000072694	1500011B03Rik	AI415201|AV141149|AW556386	RIKEN cDNA 1500011B03 gene	ncRNA	4.5	3.0	3.5	0.5	0.0	3.5
Merged-chr2-32365336-2	chr2	32364836	32365836	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252536, intron 4 of 18)	B1_Mur1|SINE|Alu	2138.0	NM_028412	68379.0	Mm.170508	NM_028412	ENSMUSG00000039205	Ciz1	0610038H21Rik|2900056O04Rik|LSFR1|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-145675096-2	chr3	145674596	145675596	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25111.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	3.0	0.0	1.0	0.0	0.0	0.0
Merged-chr1-9878577-2	chr1	9878077	9879077	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133220, intron 7 of 17)	B4A|SINE|B4	-30061.0	NM_177722	240697.0	Mm.259800	NM_177722	ENSMUSG00000046101	Mcmdc2	6030422M02Rik	minichromosome maintenance domain containing 2	protein-coding	2.0	11.5	5.5	15.0	22.5	3.0
Merged-chr17-56261856-2	chr17	56261383	56262383	+	570.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010192, exon 1 of 1)	3' UTR (NM_010192, exon 1 of 1)	5090.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-20844555-2	chr1	20844055	20845055	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-24243.0	NM_008563	17215.0	Mm.4502	NM_008563	ENSMUSG00000041859	Mcm3	AL033361|C80350|Mcmd|P1|P1-MCM3|p1.m	minichromosome maintenance complex component 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-19571367-1	chr4	19570867	19571867	+	570.0	f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-1259.0	NM_001356481	70568.0	Mm.38390	NM_027769	ENSMUSG00000028228	Cpne3	5430428M23Rik|5730450C07Rik|C85108|CPN3	copine III	protein-coding	0.0	0.0	0.0	5.5	0.0	0.0
Merged-chr16-21881454-2	chr16	21880954	21881954	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10515.0	NM_172821	71751.0	Mm.420837	NM_172821	ENSMUSG00000033618	Map3k13	C130026N12Rik|LZK	mitogen-activated protein kinase kinase kinase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125640743-1	chr6	125640243	125641243	+	570.0	f0_balb.idr	intron (NM_011708, intron 27 of 51)	intron (NM_011708, intron 27 of 51)	-49676.0	NM_153589	243634.0	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-105408184-2	chr7	105407684	105408684	+	570.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033317, exon 6 of 6)	3' UTR (NM_001033317, exon 6 of 6)	3616.0	NM_001033317	233649.0	Mm.99556	NM_001033317	ENSMUSG00000030897	Cnga4	-	cyclic nucleotide gated channel alpha 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40205522-3	chr12	40205024	40206024	+	570.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013562, intron 9 of 11)	intron (NM_013562, intron 9 of 11)	-6209.0	NM_001033437	380755.0	Mm.390463	NM_001033437	ENSMUSG00000071342	Lsmem1	Gm889	leucine-rich single-pass membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-104491570-1	chr2	104491070	104492070	+	570.0	f0_balb.idr	intron (NM_010434, intron 1 of 15)	intron (NM_010434, intron 1 of 15)	2919.0	NM_010434	15259.0	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	0.0	1.5	0.5	0.0	4.0	6.5
Merged-chr6-32997028-1	chr6	32996528	32997528	+	570.0	f0_balb.idr	intron (NM_001355667, intron 3 of 8)	intron (NM_001355667, intron 3 of 8)	63232.0	NM_001355667	66075.0	Mm.21501	NM_025336	ENSMUSG00000053768	Chchd3	0610041L09Rik|1700039J09Rik|AW558177	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-30727321-1	chr15	30726821	30727821	+	570.0	f0_balb.idr	intron (NM_001355502, intron 9 of 21)	RMER6A|LTR|ERVK	-311805.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87625572-2	chr6	87625072	87626072	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-34829.0	NM_021381	58182.0	Mm.333226	NM_021381	ENSMUSG00000049409	Prokr1	EG-VEGFR1|Gpr73|Pk-r1|Pkr1	prokineticin receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76068840-2	chr15	76068340	76069340	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310542, intron 1 of 36)	intron (NM_001310542, intron 1 of 36)	944.0	NM_134089	105782.0	Mm.25568	NM_134089	ENSMUSG00000022568	Scrib	AI118201|CRIB|Crc|SCRIB1|Scrb1|mKIAA0147|vartul	scribbled planar cell polarity	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125390051-2	chr6	125389551	125390551	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9547.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0.0	0.0	2.0	0.0	0.5	5.5
Merged-chr1-93636822-2	chr1	93636322	93637322	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1095.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	0.0	0.5	1.0	1.0	0.0	1.0
Merged-chr17-91534721-2	chr17	91534221	91535221	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	-441919.0	NM_020252	18189.0	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-78489812-2	chr16	78489312	78490312	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70504.0	NR_040569	75818.0	Mm.410817	NR_040569		4930478L05Rik	-	RIKEN cDNA 4930478L05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92215096-1	chr1	92214596	92215596	+	570.0	f1_c57bl6.idr	Intergenic	Intergenic	-34755.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0.0	7.0	2.5	0.0	0.0	4.5
Merged-chr17-56471120-2	chr17	56470620	56471620	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252455, intron 1 of 27)	intron (NM_001252455, intron 1 of 27)	5360.0	NM_001252455	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33640996-1	chr17	33640496	33641496	+	570.0	f1_c57bl6.idr	non-coding (NR_028279, exon 2 of 10)	non-coding (NR_028279, exon 2 of 10)	2901.0	NR_028279	378460.0	Mm.272606	NM_001002842	ENSMUSG00000032739	Pram1	AY665714	PML-RAR alpha-regulated adaptor molecule 1	protein-coding	23.5	21.0	24.5	26.5	37.5	44.5
Merged-chr2-142608411-2	chr2	142607911	142608911	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	293053.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-118514205-1	chr5	118513705	118514705	+	570.0	f0_balb.idr	Intergenic	Intergenic	-46514.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122300690-1	chr3	122300190	122301190	+	570.0	f1_balb.idr	Intergenic	Intergenic	-6987.0	NR_030439	791077.0		NR_030439	ENSMUSG00000076456	Mir760	Mirn760|mir-760|mmu-mir-760	microRNA 760	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88109289-2	chr3	88108789	88109789	+	570.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033484, exon 26 of 38)	exon (NM_001033484, exon 26 of 38)	27238.0	NM_001033484	404710.0	Mm.331133	NM_001033484	ENSMUSG00000028068	Iqgap3	AI593484|D030034H08	IQ motif containing GTPase activating protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114980353-2	chr11	114979854	114980854	+	570.0	f0_balb.idr|f1_balb.idr	Intergenic	RLTR44C|LTR|ERVK	9532.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	5.0	0.5	1.0	6.0	8.0	15.0
Merged-chr19-21914360-2	chr19	21913860	21914860	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136020.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	18.0	24.0	30.5	24.5	15.0	23.0
Merged-chr7-140101572-2	chr7	140101072	140102072	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_104415, intron 2 of 5)	intron (NR_104415, intron 2 of 5)	869.0	NM_001286217	69064.0	Mm.41915	NM_026928	ENSMUSG00000025466	Fuom	Fucu|Le51	fucose mutarotase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81561685-2	chr10	81561185	81562185	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276288, intron 2 of 6)	intron (NM_001276288, intron 2 of 6)	2241.0	NM_001276288	14797.0	Mm.180013	NM_010347	ENSMUSG00000054452	Aes	AL024115|Esp1|Grg|Grg-5|Grg5|Tle5	amino-terminal enhancer of split	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47546328-1	chr9	47545828	47546828	+	570.0	f0_balb.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	15976.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	2.5	0.0	0.0	2.0	2.0	1.0
Merged-chr6-3509930-1	chr6	3509430	3510430	+	570.0	f0_balb.idr	intron (NM_001167751, intron 2 of 26)	intron (NM_001167751, intron 2 of 26)	11537.0	NM_001167750	73288.0	Mm.45539	NM_024260	ENSMUSG00000001376	Vps50	1700034M03Rik|8430415E05Rik|BLM|C87205|Ccdc132|mKIAA1861	VPS50 EARP/GARPII complex subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36668748-1	chr5	36668248	36669248	+	570.0	f0_balb.idr	intron (NM_001081232, intron 2 of 8)	RLTR26_Mus|LTR|ERVK	27273.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	5.0	7.0	9.5	18.5	9.5	10.0
Merged-chr7-45316312-2	chr7	45315812	45316812	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175130, intron 14 of 24)	intron (NM_175130, intron 14 of 24)	-8646.0	NR_110499	100040970.0	Mm.289810	NR_110499	ENSMUSG00000046721	Rpl14-ps1	Gm9811	ribosomal protein L14, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8918915-2	chr3	8918415	8919415	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025434, intron 1 of 2)	intron (NM_025434, intron 1 of 2)	4942.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17177688-2	chr16	17177188	17178188	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009456, intron 1 of 3)	intron (NM_009456, intron 1 of 3)	23804.0	NM_009456	22195.0	Mm.3074	NM_009456	ENSMUSG00000038965	Ube2l3	C79827|UbcM4|Ubce7	ubiquitin-conjugating enzyme E2L 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125151386-2	chr6	125150886	125151886	+	570.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001302779, exon 4 of 9)	exon (NM_001302779, exon 4 of 9)	6162.0	NM_001302779	320678.0	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	0.0	0.0	0.0	0.0	2.5	0.0
Merged-chr10-93023768-1	chr10	93023268	93024268	+	570.0	f1_c57bl6.idr	intron (NM_001347060, intron 19 of 67)	intron (NM_001347060, intron 19 of 67)	57828.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	3.5	10.0	1.5	2.5	0.0	3.0
Merged-chr6-134152748-2	chr6	134152248	134153248	+	569.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	117048.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.0	20.5	8.0	2.5	7.5	5.0
Merged-chr12-8319679-2	chr12	8319179	8320179	+	569.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_021429, intron 2 of 6)	(CA)n|Simple_repeat|Simple_repeat	6246.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138326817-2	chr1	138326333	138327333	+	569.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53095.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-20590639-2	chr8	20590139	20591139	+	569.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24288.0	NM_001270553	100861668.0	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-85000282-2	chr16	84999746	85000746	+	569.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 12 of 15)	intron (NM_001198825, intron 12 of 15)	28035.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-91395874-2	chr8	91395374	91396374	+	569.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011936, intron 1 of 8)	intron (NM_011936, intron 1 of 8)	82349.0	NM_011936	26383.0	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	4.0	1.0	5.5	5.0	1.5	2.5
Merged-chr7-29766084-2	chr7	29765584	29766584	+	569.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-2468.0	NM_023750	74352.0	Mm.251083	NM_023750	ENSMUSG00000046185	Zfp84	2210410P13Rik|4633401C23Rik|AI415447|BB081605|C86188|KRAB18|Zfp69	zinc finger protein 84	protein-coding	0.0	2.5	0.0	5.0	0.0	0.5
Merged-chr18-67477939-2	chr18	67477439	67478439	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144867, intron 5 of 6)	intron (NM_144867, intron 5 of 6)	13090.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	0.0	0.0	0.0	0.0	12.5	0.0
Merged-chr14-46955590-1	chr14	46955090	46956090	+	569.5	f1_c57bl6.idr	promoter-TSS (NR_105813)	promoter-TSS (NR_105813)	-662.0	NR_105813	102465206.0		NR_105813	ENSMUSG00000099036	Mir378c	Gm27930|mmu-mir-378c	microRNA 378c	ncRNA	39.5	92.5	36.5	10.5	12.0	24.0
Merged-chr3-10330386-2	chr3	10329886	10330886	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018864, intron 1 of 8)	intron (NM_018864, intron 1 of 8)	1053.0	NM_001310433	55980.0	Mm.183042	NM_018864	ENSMUSG00000027531	Impa1	2610002K09Rik|2900059K10Rik|AI325909	inositol (myo)-1(or 4)-monophosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79614380-2	chr11	79613880	79614880	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_003283, intron 2 of 2)	L1MEf|LINE|L1	8783.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33630323-2	chr17	33629823	33630823	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_034153, intron 3 of 6)	intron (NR_034153, intron 3 of 6)	1231.0	NM_026712	328801.0	Mm.181488	NM_026712	ENSMUSG00000073423	Zfp414	0610030H11Rik|Znf414	zinc finger protein 414	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-151231108-2	chr5	151230608	151231608	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-40915.0	NR_153382	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73273857-4	chr2	73273278	73274278	+	569.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001005343, exon 2 of 2)	exon (NM_001005343, exon 2 of 2)	1852.0	NM_001005343	381373.0	Mm.330293	NM_001005343	ENSMUSG00000068859	Sp9	-	trans-acting transcription factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-88243966-2	chr7	88243466	88244466	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-34119.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	7.5	13.0	4.0	12.0	2.0	14.0
Merged-chr7-108516863-2	chr7	108516363	108517363	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	7085.0	NM_146739	258734.0	Mm.377664	NM_146739	ENSMUSG00000058014	Olfr502	MOR204-8	olfactory receptor 502	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31113949-2	chr17	31113449	31114449	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 14 of 14)	intron (NM_009593, intron 14 of 14)	15662.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-10454703-2	chr14	10454203	10455203	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 4 of 9)	intron (NM_001360141, intron 4 of 9)	-1245.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32514497-2	chr2	32513997	32514997	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20862.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46445137-2	chr4	46444637	46445637	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5789.0	NM_130889	67628.0	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60552968-2	chr2	60552468	60553468	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008867, intron 1 of 29)	intron (NM_008867, intron 1 of 29)	340.0	NM_008867	18779.0	Mm.5092	NM_008867	ENSMUSG00000054580	Pla2r1	Pla2-r|Pla2g1br|Pla2r	phospholipase A2 receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88505847-2	chr3	88505347	88506347	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2495.0	NM_001002011	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr7-28450078-2	chr7	28449578	28450578	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-1907.0	NM_030562	80749.0	Mm.483073	NM_030562	ENSMUSG00000030600	Lrfn1	BC004018|SALM2|Semo1	leucine rich repeat and fibronectin type III domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128362051-2	chr6	128361551	128362551	+	569.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008021)	promoter-TSS (NM_008021)	771.0	NM_001326586	72440.0	Mm.143908	NM_197981	ENSMUSG00000048668	Rhno1	2510047L19Rik|5930416I19Rik	RAD9-HUS1-RAD1 interacting nuclear orphan 1	protein-coding	2.5	4.0	3.0	15.0	7.5	8.0
Merged-chr3-142616917-2	chr3	142616417	142617417	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010259, intron 10 of 10)	PB1D11|SINE|Alu	-3746.0	NM_010260	14469.0	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44876876-2	chr16	44876376	44877376	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_206535, intron 1 of 5)	MER74C|LTR|ERVL	9779.0	NM_206535	271375.0	Mm.441535	NM_206535	ENSMUSG00000090176	Cd200r2	AY230198|Cd200r1l	Cd200 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142878613-2	chr5	142878113	142879113	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033312, intron 4 of 4)	intron (NM_001033312, intron 4 of 4)	16625.0	NM_001033312	231863.0	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145725349-2	chr2	145724849	145725849	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 2 of 3)	B2_Mm1t|SINE|B2	24154.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86429500-2	chr1	86429000	86430000	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	3171.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148691544-2	chr5	148691035	148692035	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50305.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	13.5	4.5	0.0	9.0	0.0	0.0
Merged-chr5-60178960-2	chr5	60178460	60179460	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11C_MM|LTR|ERVK	-192958.0	NR_040682	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35238706-2	chr17	35238206	35239206	+	569.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347351)	TTS (NM_001347351)	2110.0	NM_023179	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	0.0	0.0	1.0	2.0	6.5	4.0
Merged-chr9-95035593-2	chr9	95035093	95036093	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 11 of 15)	intron (NM_177909, intron 11 of 15)	283764.0	NR_106116	102465763.0		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23548076-2	chr17	23547576	23548576	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2723.0	NR_126485	320020.0	Mm.445111	NR_126484		6330415G19Rik	-	RIKEN cDNA 6330415G19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170934148-2	chr1	170933648	170934648	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6565.0	NM_001160215	98752.0	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-111144593-2	chr8	111144093	111145093	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040363, intron 1 of 3)	B1_Mm|SINE|Alu	905.0	NR_040363	434350.0	Mm.442061	NR_040363		9430091E24Rik	-	RIKEN cDNA 9430091E24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94700044-2	chr16	94699544	94700544	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	88625.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90204755-2	chr9	90204255	90205255	+	569.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_194334, exon 13 of 13)	3' UTR (NM_194334, exon 13 of 13)	41777.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102393823-2	chr12	102393323	102394323	+	569.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011175)	TTS (NM_011175)	45990.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	4.0	3.0	4.5	2.5	4.0	10.0
Merged-chr16-30062131-2	chr16	30061631	30062631	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR28B|LTR|ERV1	-3226.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	4.5	0.0	4.5	0.0	2.0	2.0
Merged-chr11-82892212-2	chr11	82891712	82892712	+	569.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030224)	promoter-TSS (NM_030224)	67.0	NM_030224	78919.0	Mm.286733	NM_030224	ENSMUSG00000018844	Fndc8	4930466G16Rik	fibronectin type III domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151691429-2	chr1	151690929	151691929	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 6 of 13)	4.5SRNA|scRNA|scRNA	63298.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-62931109-2	chr14	62930609	62931609	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 5 of 11)	intron (NM_175546, intron 5 of 11)	53401.0	NM_001037751	432867.0	Mm.99387	NM_001037751	ENSMUSG00000075574	Defb48	Defb42|EG432867	defensin beta 48	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49122686-2	chr7	49122186	49123186	+	569.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_154465, exon 4 of 4)	non-coding (NR_154465, exon 4 of 4)	39472.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-61419960-2	chr17	61419460	61420460	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER67A|LTR|ERV1	1461357.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26641286-2	chr17	26640786	26641786	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 8 of 9)	intron (NM_026170, intron 8 of 9)	-35110.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5755947-2	chr17	5755447	5756447	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42710.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6346007-2	chr19	6345507	6346507	+	569.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105955)	promoter-TSS (NR_105955)	-473.0	NR_105955	102465598.0		NR_105955	ENSMUSG00000099230	Mir6989	Gm27885|mmu-mir-6989	microRNA 6989	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163996168-2	chr2	163995668	163996668	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018753, intron 1 of 5)	intron (NM_018753, intron 1 of 5)	971.0	NM_018753	54401.0	Mm.34319	NM_018753	ENSMUSG00000018326	Ywhab	1300003C17Rik|14-3-3b	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	protein-coding	5.0	0.0	0.0	5.0	0.0	0.0
Merged-chr5-20947933-2	chr5	20947433	20948433	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080977, intron 1 of 7)	PB1D10|SINE|Alu	-3056.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103978535-2	chr14	103978035	103979035	+	569.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045953, exon 3 of 3)	non-coding (NR_045953, exon 3 of 3)	48607.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112651764-2	chr12	112651264	112652264	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6936.0	NM_013929	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-116954604-2	chr2	116954104	116955104	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54452.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76899257-2	chr15	76898753	76899753	+	569.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025536)	promoter-TSS (NM_025536)	-688.0	NM_025536	66398.0	Mm.291716	NM_025536	ENSMUSG00000055041	Commd5	2310065H03Rik|AI854466|D15Ertd81e|Hcarg	COMM domain containing 5	protein-coding	5.0	17.0	3.5	2.5	9.5	13.0
Merged-chr10-29533801-2	chr10	29533301	29534301	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028351, intron 1 of 4)	intron (NM_028351, intron 1 of 4)	2066.0	NM_028351	72780.0	Mm.45191	NM_028351	ENSMUSG00000019880	Rspo3	2810459H04Rik|AW742308|Cristin1|Thsd2	R-spondin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-114068077-2	chr14	114067577	114068577	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-763888.0	NR_045661	75822.0	Mm.410813	NR_045661	ENSMUSG00000115320	4930524C18Rik	-	RIKEN cDNA 4930524C18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78145854-2	chr10	78145354	78146354	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23914.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60303571-2	chr10	60303071	60304071	+	569.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001146120)	TTS (NM_001146120)	19110.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141065415-2	chr7	141064915	141065915	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177897, intron 8 of 19)	intron (NM_177897, intron 8 of 19)	4141.0	NM_177897	330671.0	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76091229-2	chr15	76090729	76091729	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358359, intron 1 of 17)	intron (NM_001358359, intron 1 of 17)	461.0	NM_001358359	223649.0	Mm.101946	NM_144847	ENSMUSG00000075590	Nrbp2	BC011468	nuclear receptor binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-49684289-2	chr19	49683789	49684789	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	994357.0	NM_001252501	58178.0	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-70881543-2	chr16	70881043	70882043	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-249533.0	NR_040561	70972.0	Mm.399391	NR_040561		4931420L22Rik	-	RIKEN cDNA 4931420L22 gene	ncRNA	0.0	0.5	0.5	0.0	0.5	0.5
Merged-chr17-74880589-2	chr17	74880089	74881089	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124940.0	NM_019919	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10398222-2	chr17	10397722	10398722	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57994.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4609854-2	chr2	4609354	4610354	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 23 of 23)	intron (NM_001177843, intron 23 of 23)	42281.0	NM_026045	67229.0	Mm.38529	NM_026045	ENSMUSG00000039449	Prpf18	2810441A10Rik	pre-mRNA processing factor 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-44283568-2	chr2	44283068	44284068	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 12 of 14)	MTEa|LTR|ERVL-MaLR	-218244.0	NR_040622	320872.0	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167359882-2	chr2	167359382	167360382	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-10704.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120480000-2	chr14	120479500	120480500	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029519, intron 1 of 1)	intron (NM_029519, intron 1 of 1)	1539.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64093575-2	chr9	64093075	64094075	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12814.0	NR_040743	76814.0	Mm.243771	NR_040743		Scarletltr	2600006L11Rik	Scarletltr, erythroid developmental long intergenic non-protein coding transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-164079042-2	chr1	164078542	164079542	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164059, intron 7 of 7)	intron (NM_001164059, intron 7 of 7)	16966.0	NM_011346	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26602435-2	chr17	26601935	26602935	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	40923.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr7-128010011-2	chr7	128009511	128010511	+	569.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001079932, exon 6 of 6)	exon (NM_001079932, exon 6 of 6)	5633.0	NM_001079932	434246.0	Mm.389924	NM_001079932	ENSMUSG00000042828	Trim72	BC067209|MG53	tripartite motif-containing 72	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57613995-2	chr16	57613495	57614495	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-7128.0	NM_025599	66497.0	Mm.425976	NM_025599	ENSMUSG00000022748	Cmss1	1110001A06Rik|2610528E23Rik|4930572F24Rik|AV099812|AV122629	cms small ribosomal subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84793069-2	chr17	84792569	84793569	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-2283.0	NM_028233	72416.0	Mm.217027	NM_028233	ENSMUSG00000024120	Lrpprc	3110001K13Rik|C76645|Gp130|Lrp130|Lsfc	leucine-rich PPR-motif containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140642696-2	chr5	140642196	140643196	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308040, intron 1 of 12)	intron (NM_001308040, intron 1 of 12)	6335.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135298790-2	chr3	135298290	135299290	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027208, intron 7 of 9)	intron (NM_027208, intron 7 of 9)	-8910.0	NM_178877	97086.0	Mm.441764	NM_178877	ENSMUSG00000037994	Slc9b2	C80638|NHA2|NHE10|Nhedc2|nha-oc|nhaoc	solute carrier family 9, subfamily B (NHA2, cation proton antiporter 2), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89280220-2	chr15	89279720	89280720	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026813, intron 18 of 24)	intron (NM_026813, intron 18 of 24)	25512.0	NR_105924	102465981.0		NR_105924	ENSMUSG00000098442	Mir6959	Gm27807|mmu-mir-6959	microRNA 6959	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89353533-2	chr3	89353033	89354033	+	569.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029974, exon 12 of 16)	exon (NM_029974, exon 12 of 16)	-3505.0	NM_009614	11490.0	Mm.274049	NM_009614	ENSMUSG00000028041	Adam15	AD56|MDC15	a disintegrin and metallopeptidase domain 15 (metargidin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180639849-2	chr1	180639349	180640349	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1301.0	NM_001103182	72568.0	Mm.275044	NM_175186	ENSMUSG00000058729	Lin9	2700022J23Rik|Bara|Lin-9|TGS|TGS1|mLin-9	lin-9 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44903959-2	chr7	44903459	44904459	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077264, intron 14 of 22)	intron (NM_001077264, intron 14 of 22)	7880.0	NM_027376	70300.0	Mm.276298	NM_027376	ENSMUSG00000011658	Fuz	2600013E07Rik|b2b1273Clo	fuzzy planar cell polarity protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46534778-2	chr19	46534285	46535285	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019718, intron 5 of 5)	intron (NM_019718, intron 5 of 5)	33137.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83327137-2	chr6	83326637	83327637	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145571, intron 1 of 5)	L1M4|LINE|L1	1098.0	NM_145571	232157.0	Mm.29500	NM_145571	ENSMUSG00000043131	Mob1a	4022402H07Rik|MOB1|MOB4B|Mobk1b|Mobkl1b	MOB kinase activator 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-81200072-2	chr18	81199572	81200572	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-213494.0	NM_178280	20689.0	Mm.215917	NM_178280	ENSMUSG00000024565	Sall3	B130022O04Rik|Msal|Msal-1|Sal|Salt|Spalt	spalt like transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34208643-2	chr7	34208143	34209143	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008155, intron 9 of 17)	intron (NM_008155, intron 9 of 17)	-11973.0	NM_001360710	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32943222-2	chr19	32942722	32943722	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	185645.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-60599247-2	chr3	60598747	60599747	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 2 of 7)	intron (NM_001253711, intron 2 of 7)	98068.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0.0	2.5	3.0	1.5	0.0	4.0
Merged-chr7-44245509-2	chr7	44245009	44246009	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-1213.0	NM_025880	668661.0	Mm.274492	NM_025880	ENSMUSG00000045411	2410002F23Rik	-	RIKEN cDNA 2410002F23 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57790206-2	chr6	57789706	57790706	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 1 of 4)	intron (NM_146168, intron 1 of 4)	34919.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46315813-2	chr19	46315313	46316313	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028627, intron 12 of 17)	intron (NM_028627, intron 12 of 17)	9883.0	NM_001177370	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34237486-2	chr13	34236986	34237986	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	74522.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	5.0	1.0	5.5	5.0	1.0	5.5
Merged-chr12-52228919-1	chr12	52228419	52229419	+	569.333313	f1_c57bl6.idr	intron (NM_029760, intron 6 of 10)	intron (NM_029760, intron 6 of 10)	131173.0	NM_029760	76826.0	Mm.244781	NM_029760	ENSMUSG00000035142	Nubpl	2410170E07Rik	nucleotide binding protein-like	protein-coding	1.0	0.5	2.0	2.0	0.0	0.0
Merged-chr19-53264441-3	chr19	53263937	53264937	+	569.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9232.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124320553-2	chr6	124320053	124321053	+	569.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_053094, exon 11 of 17)	exon (NM_053094, exon 11 of 17)	15902.0	NM_053094	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115671046-2	chr11	115670562	115671562	+	569.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	28472.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5779500-2	chr19	5779000	5780000	+	569.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8081.0	NR_155264	78891.0	Mm.276063	NM_023912	ENSMUSG00000024941	Scyl1	2810011O19Rik|C85140|Ntkl|mdf|mfd|p105	SCY1-like 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93659201-3	chr2	93658698	93659698	+	569.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007442, intron 1 of 3)	intron (NM_007442, intron 1 of 3)	16764.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-89379351-2	chr13	89378851	89379851	+	569.166626	f0_c57.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-161285.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	16.0	14.0	12.0	3.0	12.5	5.0
Merged-chr3-75300138-2	chr3	75299638	75300638	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-30060.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98830106-2	chr7	98829606	98830606	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5006.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76151319-2	chr14	76150819	76151819	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	40428.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77562543-2	chr10	77562043	77563043	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 14 of 15)	intron (NM_008404, intron 14 of 15)	-19112.0	NM_145925	108705.0	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540|PBF	pituitary tumor-transforming 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79018435-1	chr11	79017935	79018935	+	569.0	f1_c57bl6.idr	intron (NM_001348207, intron 16 of 17)	intron (NM_001348207, intron 16 of 17)	-5162.0	NR_045873	790910.0	Mm.440410	NR_045873		Gm11201	-	predicted gene 11201	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19772122-1	chr7	19771622	19772622	+	569.0	f1_c57bl6.idr	Intergenic	Intergenic	-1590.0	NM_020486	57278.0	Mm.29236	NM_020486	ENSMUSG00000002980	Bcam	1200005K12Rik|B-CAM|Gplu|Lu	basal cell adhesion molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150614364-1	chr4	150613864	150614864	+	569.0	f1_balb.idr	intron (NM_001085492, intron 17 of 22)	intron (NM_001085492, intron 17 of 22)	37810.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	7.0	3.5	0.0	1.0	4.0	0.0
Merged-chr5-105810587-1	chr5	105810087	105811087	+	569.0	f1_balb.idr	intron (NM_001122768, intron 2 of 2)	intron (NM_001122768, intron 2 of 2)	-65981.0	NR_030777	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	1.5	1.0	0.0	4.5	0.0	0.0
Merged-chr5-3510585-1	chr5	3510085	3511085	+	569.0	f1_balb.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-33248.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.0	0.0	2.0	1.0	0.5	2.5
Merged-chr11-54182018-1	chr11	54181518	54182518	+	569.0	f0_balb.idr	intron (NR_045506, intron 2 of 2)	MER3|DNA|hAT-Charlie	31270.0	NR_045506	71056.0	Mm.56332	NR_045506	ENSMUSG00000086209	4933405E24Rik	-	RIKEN cDNA 4933405E24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55712034-2	chr14	55711534	55712534	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019984, intron 3 of 14)	intron (NM_019984, intron 3 of 14)	1054.0	NM_019984	21816.0	Mm.41964	NM_019984	ENSMUSG00000022218	Tgm1	2310004J08Rik|Tgase1	transglutaminase 1, K polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94954956-1	chr8	94954456	94955456	+	569.0	f0_balb.idr	Intergenic	Intergenic	-22153.0	NM_001198894	14766.0	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0.0	22.5	15.0	2.0	0.0	6.5
Merged-chr13-119434542-1	chr13	119434042	119435042	+	569.0	f0_balb.idr	intron (NM_145457, intron 2 of 10)	intron (NM_145457, intron 2 of 10)	5640.0	NM_145457	218693.0	Mm.490243	NM_145457	ENSMUSG00000025451	Paip1	PAIP-1	polyadenylate binding protein-interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102244512-2	chr12	102244012	102245012	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172152, intron 12 of 16)	(TG)n|Simple_repeat|Simple_repeat	-38562.0	NM_177620	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	6.0	0.0	0.5	1.0	0.0	2.5
Merged-chr1-192712086-1	chr1	192711586	192712586	+	569.0	f1_c57bl6.idr	intron (NM_144881, intron 7 of 11)	intron (NM_144881, intron 7 of 11)	59133.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	0.5	5.5	0.0	6.0	1.5	0.0
Merged-chr10-60814645-2	chr10	60814145	60815145	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029770, intron 1 of 16)	intron (NM_029770, intron 1 of 16)	16936.0	NM_029770	107449.0	Mm.290433	NM_029770	ENSMUSG00000020099	Unc5b	6330415E02Rik|A630020F16|D10Bwg0792e|Unc5h2	unc-5 netrin receptor B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120818318-2	chr11	120817818	120818818	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007988, intron 10 of 42)	intron (NM_007988, intron 10 of 42)	6229.0	NM_007988	14104.0	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-121314961-1	chr1	121314461	121315461	+	569.0	f0_balb.idr	intron (NM_001271532, intron 1 of 4)	intron (NM_001271532, intron 1 of 4)	12717.0	NM_001271531	72999.0	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113487867-3	chr12	113487368	113488368	+	569.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1697.0	NM_001009545	238405.0	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.0	0.0	3.0	0.0	3.5	0.5
Merged-chr6-143113967-2	chr6	143113467	143114467	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153819, intron 7 of 8)	ORR1C2|LTR|ERVL-MaLR	-13815.0	NM_001109688	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-92383238-2	chr2	92382738	92383738	+	569.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001202446)	TTS (NM_001202446)	320.0	NM_183112	75641.0	Mm.330409	NM_183112	ENSMUSG00000044916	1700029I15Rik	1700021K07Rik	RIKEN cDNA 1700029I15 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-106784684-2	chr13	106784230	106785230	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	152228.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr14-65357453-1	chr14	65356953	65357953	+	569.0	f1_c57bl6.idr	Intergenic	Intergenic	-1223.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	19.0	47.5	32.0	24.5	38.0	37.0
Merged-chr17-55962925-2	chr17	55962425	55963425	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028381, intron 3 of 7)	intron (NM_028381, intron 3 of 7)	-3524.0	NR_108021	100504333.0	Mm.391908	NR_108021	ENSMUSG00000097077	Gm16712	-	predicted gene, 16712	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84949441-2	chr15	84948941	84949941	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033273, intron 9 of 9)	intron (NM_001033273, intron 9 of 9)	2182.0	NR_037206	100526461.0		NR_037206	ENSMUSG00000080441	Mir1249	mir-1249|mmu-mir-1249	microRNA 1249	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120252647-2	chr2	120252147	120253147	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-7312.0	NM_177845	329502.0	Mm.330505	NM_177845	ENSMUSG00000050211	Pla2g4e	2310026J01Rik|C230096D22|Pla2epsilon	phospholipase A2, group IVE	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118788810-2	chr9	118788310	118789310	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 3 of 13)	RLTR53_Mm|LTR|ERVK	77118.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-33756587-2	chr2	33756087	33757087	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 7 of 9)	intron (NM_175184, intron 7 of 9)	-49229.0	NR_045729	320482.0	Mm.442057	NR_045729	ENSMUSG00000086484	Nron	A630071L07Rik|Gm24353	non-protein coding RNA, repressor of NFAT	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99558678-1	chr7	99558178	99559178	+	569.0	f1_balb.idr	intron (NM_178220, intron 1 of 14)	B1_Mur4|SINE|Alu	6409.0	NR_029760	723840.0		NR_029760	ENSMUSG00000065571	Mir326	Mirn326|mir-326|mmu-mir-326	microRNA 326	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34860157-2	chr6	34859657	34860657	+	569.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001289657)	TTS (NM_001289657)	-2989.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25978694-2	chr8	25978194	25979194	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1950.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	15.0	5.0	13.5	1.5	4.5	7.0
Merged-chr11-115227840-1	chr11	115227340	115228340	+	569.0	f1_c57bl6.idr	intron (NM_001033393, intron 8 of 9)	ID_B1|SINE|B4	39403.0	NM_010350	14813.0	Mm.39090	NM_010350	ENSMUSG00000020734	Grin2c	GluN2C|NMDAR2C|NR2C	glutamate receptor, ionotropic, NMDA2C (epsilon 3)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr2-43623158-2	chr2	43622658	43623658	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289593, intron 8 of 12)	intron (NM_001289593, intron 8 of 12)	67833.0	NM_027552	70789.0	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-149860110-2	chr1	149859610	149860610	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 13 of 17)	(TG)n|Simple_repeat|Simple_repeat	62329.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180066365-2	chr1	180065865	180066865	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153194, intron 7 of 35)	intron (NR_153194, intron 7 of 35)	105276.0	NM_001033285	226751.0	Mm.259655	NM_001033285	ENSMUSG00000026490	Cdc42bpa	A930014J19Rik|DMPK-like	CDC42 binding protein kinase alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr14-76473609-1	chr14	76473109	76474109	+	569.0	f0_balb.idr	intron (NM_207652, intron 1 of 2)	intron (NM_207652, intron 1 of 2)	-14827.0	NM_001177751	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	10.0	14.0	18.5	3.5	0.5	2.0
Merged-chr13-34180004-1	chr13	34179504	34180504	+	569.0	f0_balb.idr	3' UTR (NM_001033167, exon 11 of 11)	3' UTR (NM_001033167, exon 11 of 11)	17040.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	0.0	3.0	5.5	11.0	3.5	8.0
Merged-chr10-68727072-2	chr10	68726572	68727572	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 1 of 5)	GA-rich|Low_complexity|Low_complexity	3326.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25579239-2	chr9	25578739	25579739	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 3 of 7)	intron (NM_026189, intron 3 of 7)	97642.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116601082-2	chr11	116600582	116601582	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167680, intron 14 of 18)	intron (NM_001167680, intron 14 of 18)	7395.0	NM_009591	11298.0	Mm.42233	NM_009591	ENSMUSG00000020804	Aanat	AA-NAT|Nat-2|Nat4|Snat	arylalkylamine N-acetyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135536048-1	chr7	135535548	135536548	+	569.0	f1_balb.idr	Intergenic	Intergenic	-1776.0	NM_011212	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44124491-1	chr16	44123991	44124991	+	569.0	f1_balb.idr	intron (NM_007508, intron 1 of 14)	MLT1L|LTR|ERVL-MaLR	14768.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101641223-1	chr4	101640723	101641723	+	569.0	f0_balb.idr	3' UTR (NM_001164585, exon 20 of 20)	3' UTR (NM_001164585, exon 20 of 20)	-6560.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7888117-2	chr10	7887618	7888618	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51737.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	4.5	27.5	10.5	6.0	26.0	10.5
Merged-chr13-115088695-2	chr13	115088195	115089195	+	569.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_134058, exon 2 of 2)	exon (NM_134058, exon 2 of 2)	1463.0	NM_134058	105083.0	Mm.486295	NM_134058	ENSMUSG00000042275	Pelo	AA409897|AI852218	pelota mRNA surveillance and ribosome rescue factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167885246-2	chr2	167884746	167885746	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47081.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-5161645-2	chr10	5161145	5162145	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001079686, intron 8 of 54)	intron (NM_001079686, intron 8 of 54)	33062.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45746010-1	chr17	45745510	45746510	+	569.0	f1_c57bl6.idr	intron (NR_152153, intron 1 of 4)	intron (NR_152153, intron 1 of 4)	11504.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	5.0	12.0	3.0	7.0	3.5	3.5
Merged-chr3-89313013-2	chr3	89312513	89313513	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	9866.0	NM_010108	13638.0	Mm.331159	NM_010108	ENSMUSG00000028039	Efna3	AW494418|EFL-2|Ehk1-L|Epl3|LERK-3	ephrin A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64958591-2	chr5	64958091	64959091	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359180, intron 1 of 1)	Lx8b|LINE|L1	1505.0	NM_001359180	21899.0	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128908763-2	chr4	128908263	128909263	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178110, intron 4 of 4)	intron (NM_178110, intron 4 of 4)	24623.0	NM_178110	67525.0	Mm.30653	NM_178110	ENSMUSG00000041000	Trim62	6330414G21Rik|AI450348|Dear1	tripartite motif-containing 62	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-57645037-1	chr8	57644537	57645537	+	569.0	f1_c57bl6.idr	intron (NM_001167981, intron 1 of 11)	intron (NM_001167981, intron 1 of 11)	-6716.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	6.0	1.5	0.5	6.0	1.5	0.5
Merged-chr2-26509515-2	chr2	26509015	26510015	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5588.0	NR_132655	102639736.0		NR_132655		Gm35978	-	predicted gene, 35978	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140721878-2	chr5	140721378	140722378	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2249.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75466983-2	chr11	75466483	75467483	+	569.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_030711)	TTS (NR_030711)	-1067.0	NM_001291156	380712.0	Mm.41393	NM_027249	ENSMUSG00000038217	Tlcd2	-	TLC domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80388314-2	chr10	80387814	80388814	+	569.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198615)	promoter-TSS (NM_198615)	-663.0	NM_198615	237400.0	Mm.268389	NM_198615	ENSMUSG00000048696	Mex3d	BC059858|Rkhd1	mex3 RNA binding family member D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45411627-2	chr4	45411127	45412127	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2861.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	2.0	0.0	2.0	5.5	2.0	0.5
Merged-chr13-37601502-1	chr13	37601002	37602002	+	569.0	f1_c57bl6.idr	Intergenic	Intergenic	-224536.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.0	0.0	2.0	1.5	3.0	3.5
Merged-chr13-34156123-1	chr13	34155623	34156623	+	569.0	f1_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6841.0	NM_001101430	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	0.0	1.0	0.0	2.0	0.0	3.0
Merged-chr10-51482710-2	chr10	51482210	51483210	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008147, intron 4 of 8)	intron (NM_008147, intron 4 of 8)	2098.0	NM_001291892	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66322292-2	chr5	66321792	66322792	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310626, intron 10 of 15)	intron (NM_001310626, intron 10 of 15)	15373.0	NM_001201416	11787.0	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-111362875-1	chr5	111362375	111363375	+	569.0	f1_balb.idr	intron (NM_001359216, intron 5 of 9)	intron (NM_001359216, intron 5 of 9)	32178.0	NM_001359216	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	6.5	12.0	8.5	9.0	16.0	9.0
Merged-chr8-15423058-2	chr8	15422558	15423558	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	365405.0	NM_008664	17930.0	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145469532-1	chr2	145469032	145470032	+	569.0	f0_c57.idr	intron (NM_053195, intron 3 of 16)	intron (NM_053195, intron 3 of 16)	85450.0	NM_001037929	627302.0	Mm.445953	NM_001037929		Gm14092	-	predicted gene 14092	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-77453936-2	chr8	77453436	77454436	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 1 of 22)	RMER13A1|LTR|ERVK	-63120.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32570437-2	chr2	32569937	32570937	+	569.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010073)	promoter-TSS (NM_010073)	-421.0	NM_010073	13481.0	Mm.22001	NM_010073	ENSMUSG00000026810	Dpm2	AW557993|R75484	dolichol-phosphate (beta-D) mannosyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106193169-1	chr9	106192669	106193669	+	569.0	f0_balb.idr	Intergenic	Intergenic	5770.0	NM_198931	67905.0	Mm.23018	NM_026447	ENSMUSG00000020253	Ppm1m	2810423O19Rik|AW610647|C77250|PP2Ceta	protein phosphatase 1M	protein-coding	5.5	8.5	5.0	2.5	11.0	8.5
Merged-chr1-161878166-1	chr1	161877666	161878666	+	569.0	f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	-1484.0	NM_001357402	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	16.5	9.0	8.0	6.5	3.0	7.5
Merged-chr3-16755283-1	chr3	16754783	16755783	+	569.0	f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-61811.0	NR_153388	102632048.0	Mm.417635	NR_153388		Gm30223	-	predicted gene, 30223	ncRNA	0.0	0.0	2.5	0.0	0.0	0.0
Merged-chr7-116244470-2	chr7	116243970	116244970	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305185, intron 3 of 26)	B2_Mm2|SINE|B2	-6694.0	NM_001305186	233765.0	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49609185-2	chr11	49608685	49609685	+	569.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008029)	promoter-TSS (NM_008029)	-494.0	NM_008029	14257.0	Mm.3291	NM_008029	ENSMUSG00000020357	Flt4	AI323512|Chy|Flt-4|VEGFR-3|VEGFR3	FMS-like tyrosine kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111180207-2	chr10	111179707	111180707	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003717, intron 1 of 22)	intron (NM_001003717, intron 1 of 22)	15405.0	NM_175489	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109374320-2	chr11	109373820	109374820	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010303, intron 2 of 3)	B1_Mur4|SINE|Alu	-10666.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34392502-2	chr7	34392002	34393002	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2797.0	NM_025948	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172013049-1	chr1	172012549	172013549	+	569.0	f1_balb.idr	intron (NM_033509, intron 2 of 7)	intron (NM_033509, intron 2 of 7)	14246.0	NM_033509	93840.0	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	VANGL planar cell polarity 2	protein-coding	0.0	3.5	0.0	6.0	0.0	2.0
Merged-chr10-60361762-2	chr10	60361262	60362262	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028732, intron 3 of 6)	intron (NM_028732, intron 3 of 6)	14911.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-17657187-2	chr14	17656687	17657687	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER45B|DNA|hAT-Tip100	-3773.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	1.0	0.0	0.0	0.0	6.5	2.0
Merged-chr9-87249641-2	chr9	87249141	87250141	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199316, intron 2 of 26)	intron (NM_199316, intron 2 of 26)	5891.0	NM_199316	382090.0	Mm.335338	NM_199316	ENSMUSG00000056919	Cep162	4922501C03Rik|mKIAA1009	centrosomal protein 162	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76672167-2	chr15	76671667	76672667	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152559, intron 1 of 8)	intron (NR_152559, intron 1 of 8)	524.0	NM_033371	73062.0	Mm.322901	NM_033371	ENSMUSG00000033819	Ppp1r16a	2900084E10Rik|Mypt3|R75527	protein phosphatase 1, regulatory (inhibitor) subunit 16A	protein-coding	4.5	10.0	18.5	5.0	10.5	11.0
Merged-chr5-101882287-2	chr5	101881787	101882787	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 44 of 66)	intron (NM_172882, intron 44 of 66)	117157.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.0	12.0	5.0	2.5	1.5	0.0
Merged-chr17-49009933-1	chr17	49009433	49010433	+	569.0	f1_c57bl6.idr	intron (NM_027452, intron 1 of 2)	intron (NM_027452, intron 1 of 2)	77351.0	NM_027452	70530.0	Mm.133607	NM_027452	ENSMUSG00000040490	Lrfn2	5730420O05Rik|SALM1|mKIAA1246	leucine rich repeat and fibronectin type III domain containing 2	protein-coding	0.0	3.0	0.0	1.5	2.5	0.0
Merged-chr16-20213779-3	chr16	20213303	20214303	+	569.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033237, intron 21 of 29)	intron (NM_001033237, intron 21 of 29)	27555.0	NM_198599	208158.0	Mm.326383	NM_198599	ENSMUSG00000041205	Map6d1	A330066I15Rik	MAP6 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11296616-2	chr16	11296116	11297116	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-17193.0	NM_011608	21935.0	Mm.12935	NM_011608	ENSMUSG00000022496	Tnfrsf17	BCM|BCMA|Tnfrsf13|Tnfrsf13a	tumor necrosis factor receptor superfamily, member 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-28489361-2	chr8	28488861	28489861	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-404508.0	NR_033590	666422.0	Mm.484413	NR_033590	ENSMUSG00000110372	Gm8096	EG666422	3-phosphoglycerate dehydrogenase pseudogene	pseudo	0.0	1.5	0.0	0.0	10.5	0.0
Merged-chr3-105757568-2	chr3	105757071	105758071	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145541, intron 1 of 7)	intron (NM_145541, intron 1 of 7)	43810.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	4.0	3.0	4.5	3.0	0.0	0.0
Merged-chr1-177028192-2	chr1	177027692	177028692	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011785, intron 12 of 12)	intron (NM_011785, intron 12 of 12)	-192059.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-16366502-1	chr14	16366002	16367002	+	569.0	f0_balb.idr	intron (NM_009409, intron 1 of 35)	intron (NM_009409, intron 1 of 35)	1296.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-89547988-1	chr10	89547488	89548488	+	569.0	f0_balb.idr	Intergenic	Intergenic	-14366.0	NM_001163504	20186.0	Mm.3095	NM_009108	ENSMUSG00000047638	Nr1h4	AI957360|Fxr|HRR1|RIP14|Rxrip14	nuclear receptor subfamily 1, group H, member 4	protein-coding	0.0	9.5	0.5	15.0	121.0	6.0
Merged-chr18-34961720-1	chr18	34961220	34962220	+	569.0	f1_c57bl6.idr	Intergenic	RMER16-int|LTR|ERVK	-7369.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	1.5	7.0	5.0	0.0	8.0	0.0
Merged-chr8-95702010-2	chr8	95701510	95702510	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1027.0	NM_001195006	234593.0	Mm.29846	NM_145602	ENSMUSG00000036564	Ndrg4	D8Bwg1337e|Ndr1-rs|Ndr4|R74996|SMAP-8	N-myc downstream regulated gene 4	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr2-84594051-2	chr2	84593551	84594551	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	55429.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	3.5	10.0	10.0	3.5	8.0	8.0
Merged-chr4-126232407-2	chr4	126231907	126232907	+	569.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_144941, exon 17 of 17)	3' UTR (NM_144941, exon 17 of 17)	23912.0	NM_144941	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	1.0	1.5	0.0	0.0	0.0	0.0
Merged-chr15-27676953-1	chr15	27676453	27677453	+	569.0	f0_balb.idr	intron (NM_198301, intron 1 of 6)	B4A|SINE|B4	4589.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-108214931-2	chr13	108214431	108215431	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029001, intron 1 of 7)	CpG	527.0	NM_029001	74559.0	Mm.286127	NM_029001	ENSMUSG00000021696	Elovl7	9130013K24Rik|AI840082	ELOVL family member 7, elongation of long chain fatty acids (yeast)	protein-coding	5.0	2.0	0.0	0.0	2.0	0.5
Merged-chr9-99498496-2	chr9	99497996	99498996	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028768, intron 16 of 21)	intron (NM_028768, intron 16 of 21)	28075.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67955340-2	chr7	67954840	67955840	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 1 of 20)	intron (NM_010513, intron 1 of 20)	3083.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-76130352-2	chr6	76129852	76130852	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6C|LTR|ERVK	-1112125.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	2.5	0.0	0.0	3.0	0.0	0.0
Merged-chr7-145291667-1	chr7	145291167	145292167	+	569.0	f1_balb.idr	Intergenic	Intergenic	-7656.0	NR_132642	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	0.0	0.0	2.0	2.0	23.0	1.0
Merged-chr3-95682926-2	chr3	95682406	95683406	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301705, intron 6 of 17)	RSINE1|SINE|B4	5011.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0.5	0.0	0.0	8.0	1.0	1.5
Merged-chr18-53148644-1	chr18	53148144	53149144	+	569.0	f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-27648.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	17.5	23.0	8.0	0.0	0.0	0.5
Merged-chr4-58470452-1	chr4	58469952	58470952	+	569.0	f0_c57.idr	intron (NM_172989, intron 3 of 3)	intron (NM_172989, intron 3 of 3)	28951.0	NM_001290486	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0.0	0.0	1.0	0.0	0.0	0.5
Merged-chr2-24974182-2	chr2	24973682	24974682	+	569.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001031808, exon 2 of 2)	3' UTR (NM_001031808, exon 2 of 2)	916.0	NM_001031808	107733.0	Mm.23010	NM_001031808	ENSMUSG00000036850	Mrpl41	MRP-L27|Rpml27	mitochondrial ribosomal protein L41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89906422-2	chr3	89905922	89906922	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	6774.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	0.5	3.0	3.5	0.5	3.0	5.0
Merged-chr4-152180146-2	chr4	152179646	152180646	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133348, intron 1 of 8)	intron (NM_133348, intron 1 of 8)	2046.0	NM_133348	70025.0	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-4001932-1	chr13	4001432	4002432	+	569.0	f0_balb.idr	Intergenic	Intergenic	-56583.0	NM_031250	83428.0	Mm.313662	NM_031250	ENSMUSG00000044988	Ucn3	ucn III	urocortin 3	protein-coding	0.0	0.0	0.0	3.0	0.0	0.0
Merged-chr2-167638831-2	chr2	167638331	167639331	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-6826.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24641512-2	chr16	24641012	24642012	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-80343.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-89441535-1	chr10	89441035	89442035	+	569.0	f1_balb.idr	intron (NM_001079876, intron 1 of 10)	ORR1D1|LTR|ERVL-MaLR	2432.0	NM_001284344	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	4.0	4.0	5.5	3.0	5.5	8.5
Merged-chr4-48481378-2	chr4	48480878	48481878	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7915.0	NM_001355740	269536.0	Mm.272025	NM_172304	ENSMUSG00000028345	Tex10	2610206N19Rik|2810462N03Rik|BC006867	testis expressed gene 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84284555-1	chr15	84284055	84285055	+	569.0	f1_balb.idr	intron (NM_133167, intron 4 of 12)	intron (NM_133167, intron 4 of 12)	-40165.0	NM_022321	64099.0	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	1.0	0.0	1.5	2.0	3.0	1.5
Merged-chr9-118864298-2	chr9	118863806	118864806	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 9 of 13)	L1MA5|LINE|L1	-62230.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	4.5	19.0	14.0	13.0	3.5	3.0
Merged-chr8-47685160-2	chr8	47684660	47685660	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-10001.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104627343-2	chr8	104626843	104627843	+	569.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019662)	TTS (NM_019662)	-2947.0	NM_001252628	12556.0	Mm.19423	NM_007663	ENSMUSG00000031881	Cdh16	-	cadherin 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-42159685-1	chr12	42159185	42160185	+	569.0	f0_balb.idr	Intergenic	Intergenic	-673628.0	NM_010733	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81784333-2	chr13	81783833	81784833	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007684, intron 1 of 4)	intron (NM_007684, intron 1 of 4)	1086.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-36002166-2	chr10	36001666	36002666	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-504641.0	NM_001253355	319415.0	Mm.332442	NM_001081208	ENSMUSG00000044499	Hs3st5	D930005L05Rik|Gm1151|Hs3ost5	heparan sulfate (glucosamine) 3-O-sulfotransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-75689847-2	chr12	75689347	75690347	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-20310.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128033008-2	chr10	128032508	128033508	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2338.0	NM_013608	17938.0	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69908924-1	chr8	69908424	69909424	+	569.0	f1_c57bl6.idr	3' UTR (NM_145596, exon 13 of 13)	3' UTR (NM_145596, exon 13 of 13)	-6366.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	0.0	5.5	0.0	0.0	3.0	2.0
Merged-chr4-137612702-1	chr4	137612202	137613202	+	569.0	f1_c57bl6.idr	intron (NM_001355588, intron 8 of 26)	intron (NM_001355588, intron 8 of 26)	18530.0	NM_130879	170707.0	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	11.5	19.0	10.5	1.0	0.5	1.0
Merged-chr9-35125505-2	chr9	35125005	35126005	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027030, intron 5 of 5)	intron (NM_027030, intron 5 of 5)	-8641.0	NM_009178	20443.0	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	SIAT4-C|ST3Gal IV|ST3GalIV|Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94344826-2	chr8	94344330	94345330	+	569.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001205311, exon 15 of 25)	exon (NM_001205311, exon 15 of 25)	15622.0	NM_001205311	20497.0	Mm.25804	NM_019415	ENSMUSG00000031766	Slc12a3	AI035291|NCC|NCCT|TSC	solute carrier family 12, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80413688-2	chr10	80413188	80414188	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164153, intron 16 of 18)	B1_Mus1|SINE|Alu	-6867.0	NM_025650	66594.0	Mm.379119	NM_025650	ENSMUSG00000020163	Uqcr11	0710008D09Rik|AL022707|Uqcr	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7349708-1	chr9	7349208	7350208	+	569.0	f0_balb.idr	intron (NM_001320077, intron 3 of 10)	intron (NM_001320077, intron 3 of 10)	2334.0	NM_008605	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-23887454-2	chr3	23886954	23887954	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001326288, intron 11 of 13)	RMER17D2|LTR|ERVK	896552.0	NM_001326288	635702.0	Mm.448351	NM_001326288	ENSMUSG00000102758	Naaladl2	2810043G22Rik|EG635702|Gm1021	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148395861-1	chr2	148395361	148396361	+	569.0	f0_balb.idr	exon (NM_009219, exon 1 of 1)	exon (NM_009219, exon 1 of 1)	484.0	NM_009219	20608.0	Mm.35324	NM_009219	ENSMUSG00000037014	Sstr4	Smstr4|sst4	somatostatin receptor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58297785-1	chr11	58297285	58298285	+	569.0	f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-9284.0	NM_182996	103836.0	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	0.0	0.0	0.5	0.0	0.0	1.0
Merged-chr17-63167388-2	chr17	63166888	63167888	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 7 of 8)	IMPB_01|Satellite|Satellite	145585.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86885120-1	chr4	86884620	86885620	+	569.0	f0_c57.idr	intron (NM_001290543, intron 1 of 5)	B3|SINE|B2	10706.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	7.5	11.0	4.5	7.0	2.0	2.5
Merged-chr3-9887385-1	chr3	9886885	9887885	+	569.0	f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-53706.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	33.0	29.5	14.0	30.0	13.0	5.5
Merged-chr6-83032115-2	chr6	83031615	83032615	+	568.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010070, intron 4 of 4)	intron (NM_010070, intron 4 of 4)	1356.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	13.5	12.0	5.5	10.5	13.0	10.5
Merged-chr18-39246462-5	chr18	39245938	39246938	+	568.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 16 of 21)	intron (NM_001361073, intron 16 of 21)	240807.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-62118759-3	chr14	62118267	62119267	+	568.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	174212.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-53174793-2	chr16	53174293	53175293	+	568.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-359049.0	NR_040495	73820.0	Mm.60493	NR_040495		4930404A05Rik	-	RIKEN cDNA 4930404A05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6435309-2	chr15	6434809	6435809	+	568.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_023118, exon 12 of 15)	exon (NM_023118, exon 12 of 15)	-10024.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117068137-2	chr8	117067574	117068574	+	568.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 6 of 42)	intron (NM_029686, intron 6 of 42)	14375.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37155354-2	chr10	37154854	37155854	+	568.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16428.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-125990367-2	chr4	125989867	125990867	+	568.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34292.0	NR_045561	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-86468678-2	chr9	86468186	86469186	+	568.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_177208, intron 1 of 38)	intron (NM_177208, intron 1 of 38)	1532.0	NM_177208	320615.0	Mm.245500	NM_177208	ENSMUSG00000034973	Dopey1	B130005I07Rik|BC035275|C130028L17|D9Ertd809e	dopey family member 1	protein-coding	0.0	2.0	0.5	0.0	3.5	1.0
Merged-chr9-114754838-2	chr9	114754338	114755338	+	568.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23635.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	0.0	2.5	0.0	0.0	0.0	0.0
Merged-chr9-124054600-1	chr9	124054100	124055100	+	568.666687	f0_balb.idr	Intergenic	Intergenic	32629.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139758278-2	chr5	139757778	139758778	+	568.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_026748, intron 31 of 46)	intron (NM_026748, intron 31 of 46)	9665.0	NR_106004	102465628.0		NR_106004	ENSMUSG00000098574	Mir7037	Gm27447|mmu-mir-7037	microRNA 7037	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70545898-3	chr8	70545387	70546387	+	568.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	6212.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	4.5	18.0	9.5	4.5	21.0	23.0
Merged-chr10-94844945-3	chr10	94844447	94845447	+	568.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 12 of 30)	intron (NM_018797, intron 12 of 30)	99631.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152670487-2	chr2	152669987	152670987	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010376, intron 1 of 11)	RSINE1|SINE|B4	1026.0	NM_001159552	14950.0	Mm.277327	NM_010376	ENSMUSG00000019188	H13	1200006O09Rik|4930443L17Rik|5031424B04Rik|AV020344|H-13|Hm13|PSL3|Spp	histocompatibility 13	protein-coding	16.5	24.0	23.5	11.5	15.5	11.5
Merged-chr19-19564952-2	chr19	19564452	19565452	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-453756.0	NM_001043354	225998.0	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta|hstp	RAR-related orphan receptor beta	protein-coding	0.0	1.5	0.5	0.0	0.0	1.0
Merged-chr19-8952010-2	chr19	8951510	8952510	+	568.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011842, exon 18 of 18)	3' UTR (NM_011842, exon 18 of 18)	-1822.0	NM_197993	70044.0	Mm.165979	NM_197993	ENSMUSG00000071645	Tut1	2700038E08Rik|PAPD2|Rbm21|TUTase6|U6-TUTase|star-PAP	terminal uridylyl transferase 1, U6 snRNA-specific	protein-coding	0.0	15.0	9.5	0.0	12.5	8.0
Merged-chr12-54987617-2	chr12	54987117	54988117	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1281.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	0.0	14.5	0.5	0.0	0.0	1.0
Merged-chr2-91646884-2	chr2	91646384	91647384	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347175, intron 4 of 4)	B3|SINE|B2	2907.0	NM_001347175	381410.0	Mm.330401	NM_001033451	ENSMUSG00000075040	Zfp408	Gm1011	zinc finger protein 408	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134784243-2	chr4	134783743	134784743	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-16239.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4057378-2	chr19	4056878	4057878	+	568.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001362043)	TTS (NM_001362043)	2069.0	NM_144869	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-130795793-2	chr3	130795293	130796293	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-65395.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91543307-2	chr16	91542807	91543807	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1|DNA|hAT-Tip100	-3787.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	6.0	3.0	2.0	3.0	3.0	2.0
Merged-chr8-109040333-2	chr8	109039833	109040833	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34889.0	NR_126329	628686.0	Mm.203332	NR_126329	ENSMUSG00000097393	D030068K23Rik	-	RIKEN cDNA D030068K23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24477076-2	chr16	24476576	24477576	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 3 of 12)	intron (NM_178665, intron 3 of 12)	28985.0	NM_001145952	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28019894-2	chr17	28019394	28020394	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 12 of 24)	intron (NM_181413, intron 12 of 24)	60690.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0.0	0.0	1.5	0.0	0.0	1.5
Merged-chr15-101123408-2	chr15	101122908	101123908	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5114.0	NM_001277258	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	0.0	0.0	0.0	3.5	0.0	2.5
Merged-chr16-17809842-2	chr16	17809342	17810342	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12560.0	NM_153790	224024.0	Mm.194950	NM_153790	ENSMUSG00000012017	Scarf2	NSR1|SREC-II|SRECRP-1|Scatf1|Srec2|SrecII	scavenger receptor class F, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115281763-2	chr11	115281263	115282263	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4794.0	NM_007997	14149.0	Mm.4719	NM_007997	ENSMUSG00000018861	Fdxr	AR	ferredoxin reductase	protein-coding	0.0	6.0	3.0	0.0	0.0	0.0
Merged-chr10-3988510-2	chr10	3988010	3989010	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 6 of 27)	MTC|LTR|ERVL-MaLR	15435.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr11-98768909-2	chr11	98768409	98769409	+	568.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001313983)	TTS (NM_001313983)	6468.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30959844-2	chr2	30959344	30960344	+	568.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133673)	TTS (NM_133673)	6843.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76568002-2	chr11	76567502	76568502	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198894, intron 1 of 22)	intron (NM_198894, intron 1 of 22)	3382.0	NM_198895	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.0	0.0	0.5	0.0	2.0	0.5
Merged-chr15-102111577-2	chr15	102111077	102112077	+	568.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_153533, exon 18 of 29)	exon (NM_153533, exon 18 of 29)	8643.0	NM_153533	209039.0	Mm.29389	NM_153533	ENSMUSG00000037003	Tns2	C1-ten|Tenc1|nep|nph	tensin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61694993-1	chr10	61694493	61695493	+	568.5	f0_c57.idr	promoter-TSS (NM_001272090)	promoter-TSS (NM_001272090)	-521.0	NM_001272090	71767.0	Mm.71514	NM_027912	ENSMUSG00000020087	Tysnd1	1300019N10Rik	trypsin domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-56611785-2	chr2	56611285	56612285	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-174026.0	NR_105751	102465169.0		NR_105751	ENSMUSG00000098437	Mir195b	Gm27491|mmu-mir-195b	microRNA 195b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32603644-2	chr2	32603144	32604144	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025311, intron 1 of 4)	ID_B1|SINE|B4	-3341.0	NM_001289547	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-144677598-2	chr6	144677098	144678098	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040519, intron 1 of 2)	intron (NR_040519, intron 1 of 2)	4730.0	NR_040519	66760.0	Mm.233631	NR_040519	ENSMUSG00000085785	Sox5os3	4933425H06Rik	SRY (sex determining region Y)-box 5, opposite strand 3	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80929223-2	chr18	80928723	80929723	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015805, intron 1 of 28)	intron (NM_015805, intron 1 of 28)	4835.0	NM_001201569	50771.0	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding	0.0	4.5	9.0	0.0	4.5	9.0
Merged-chr1-77514147-2	chr1	77513647	77514647	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007936, intron 1 of 17)	intron (NM_007936, intron 1 of 17)	941.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr15-100225064-2	chr15	100224564	100225564	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2795.0	NM_007497	11908.0	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139753070-2	chr5	139752570	139753570	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026748, intron 42 of 46)	intron (NM_026748, intron 42 of 46)	14873.0	NR_106004	102465628.0		NR_106004	ENSMUSG00000098574	Mir7037	Gm27447|mmu-mir-7037	microRNA 7037	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180313778-2	chr1	180313278	180314278	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A1|LTR|ERVL	-16698.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31477130-2	chr15	31476630	31477630	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172606, intron 19 of 25)	intron (NM_172606, intron 19 of 25)	-23441.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50129497-2	chr11	50128997	50129997	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1863.0	NM_001290759	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-66937324-2	chr16	66936824	66937824	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347247, intron 1 of 9)	intron (NM_001347247, intron 1 of 9)	280206.0	NR_040512	75501.0	Mm.394300	NR_040512	ENSMUSG00000092599	1700010K23Rik	-	RIKEN cDNA 1700010K23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117462471-2	chr8	117461971	117462971	+	568.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163262)	TTS (NM_001163262)	3206.0	NR_106046	102465653.0		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51807188-2	chr11	51806688	51807688	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43525.0	NM_025535	66397.0	Mm.196592	NM_025535	ENSMUSG00000020386	Sar1b	2310075M17Rik|2900019I22Rik|CMRD|Sara1b|Sara2|Sarb	secretion associated Ras related GTPase 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-90356809-2	chr17	90356309	90357309	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346961, intron 2 of 5)	IMPB_01|Satellite|Satellite	99071.0	NM_001346958	18189.0	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120512809-2	chr11	120512309	120513309	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17918.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111804604-2	chr12	111804104	111805104	+	568.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_028875, exon 8 of 8)	exon (NM_028875, exon 8 of 8)	9275.0	NM_028875	74335.0	Mm.19082	NM_028875	ENSMUSG00000021287	Xrcc3	-	X-ray repair complementing defective repair in Chinese hamster cells 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-95573234-2	chr1	95572734	95573734	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94360.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53622625-2	chr11	53622125	53623125	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3960.0	NM_021283	16189.0	Mm.276360	NM_021283	ENSMUSG00000000869	Il4	BSF-1|Il-4	interleukin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91239126-2	chr2	91238626	91239626	+	568.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_015464)	TTS (NR_015464)	1980.0	NR_015464	606735.0	Mm.246808	NR_015464	ENSMUSG00000097868	A330069E16Rik	-	RIKEN cDNA A330069E16 gene	ncRNA	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr5-142444293-2	chr5	142443793	142444793	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 2 of 8)	B4|SINE|B4	-19638.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	1.5	3.5	4.0	0.0	6.0	2.0
Merged-chr1-138089487-2	chr1	138088987	138089987	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 14 of 28)	intron (NM_001268286, intron 14 of 28)	85639.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10720447-2	chr16	10719947	10720947	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177562, intron 21 of 22)	intron (NM_177562, intron 21 of 22)	65089.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124468851-2	chr5	124468351	124469351	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030259, intron 2 of 3)	PB1D9|SINE|Alu	9384.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32077202-2	chr2	32076702	32077702	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151493, intron 2 of 5)	intron (NR_151493, intron 2 of 5)	6503.0	NM_175511	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-53512797-2	chr5	53512297	53513297	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-42982.0	NM_001080928	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.5	0.0	0.0	0.0	2.0	0.0
Merged-chr13-55601765-2	chr13	55601265	55602265	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146045, intron 1 of 5)	intron (NM_146045, intron 1 of 5)	1869.0	NM_001311137	218271.0	Mm.139825	NM_146045	ENSMUSG00000021504	B4galt7	-	xylosylprotein beta1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7772503-2	chr9	7772003	7773003	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133739, intron 2 of 4)	intron (NM_133739, intron 2 of 4)	8338.0	NR_152989	71929.0	Mm.283293	NM_133739	ENSMUSG00000050912	Tmem123	2310075C12Rik	transmembrane protein 123	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5475736-2	chr19	5475236	5476236	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021474, intron 3 of 10)	intron (NM_021474, intron 3 of 10)	1001.0	NM_001164352	58859.0	Mm.276367	NM_021474	ENSMUSG00000024909	Efemp2	0610011K11Rik|Fbln4|MBP1	epidermal growth factor-containing fibulin-like extracellular matrix protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-74709241-2	chr14	74708741	74709741	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23056.0	NM_001285423	13885.0	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140096776-2	chr5	140096276	140097276	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152617, intron 14 of 16)	intron (NR_152617, intron 14 of 16)	78142.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-95250328-2	chr11	95249828	95250828	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11201.0	NM_053093	93670.0	Mm.40085	NM_053093	ENSMUSG00000020872	Tac4	AW489379|PPT-C	tachykinin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86450798-2	chr1	86450298	86451298	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24469.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148674467-1	chr5	148673967	148674967	+	568.5	f0_c57.idr	Intergenic	Intergenic	-67373.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50542850-2	chr16	50542350	50543350	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040379, intron 4 of 5)	intron (NR_040379, intron 4 of 5)	14348.0	NR_040379	619312.0	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94505358-2	chr16	94504858	94505858	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 4 of 7)	intron (NM_007834, intron 4 of 7)	21271.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45467545-1	chr7	45467045	45468045	+	568.5	f1_c57bl6.idr	promoter-TSS (NM_007527)	promoter-TSS (NM_007527)	-647.0	NM_007527	12028.0	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	0.0	0.0	4.5	1.0	7.0	0.0
Merged-chr9-5958111-2	chr9	5957611	5958611	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	-210375.0	NM_001357398	71785.0	Mm.390122	NM_027924	ENSMUSG00000032006	Pdgfd	1110003I09Rik	platelet-derived growth factor, D polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102029281-2	chr7	102028781	102029781	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 5 of 8)	intron (NM_029211, intron 5 of 8)	-11126.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	3.5	7.0	2.5	1.0	8.5	1.5
Merged-chr17-76010438-2	chr17	76009938	76010938	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	149415.0	NR_033456	100043885.0	Mm.127562	NR_033456		Gm4710	-	predicted gene 4710	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66063526-2	chr5	66063026	66064026	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	34653.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	2.0	19.5	9.0	2.5	4.5	12.5
Merged-chr14-122462791-2	chr14	122462291	122463291	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022987, intron 1 of 1)	intron (NM_022987, intron 1 of 1)	2867.0	NM_022987	65100.0	Mm.390761	NM_022987	ENSMUSG00000041703	Zic5	1700049L20Rik|Opr	zinc finger protein of the cerebellum 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135474546-2	chr5	135474046	135475046	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	MTD-int|LTR|ERVL-MaLR	70576.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-129671951-2	chr3	129671451	129672451	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B1|LTR|ERVK	53135.0	NM_001310737	13645.0	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62513766-2	chr4	62513266	62514266	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276446, intron 2 of 11)	intron (NM_001276446, intron 2 of 11)	6143.0	NM_001276446	17025.0	Mm.6988	NM_008525	ENSMUSG00000028393	Alad	ALADH|Lv	aminolevulinate, delta-, dehydratase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107564827-2	chr9	107564327	107565327	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019742, intron 2 of 2)	intron (NM_019742, intron 2 of 2)	1572.0	NM_019742	80385.0	Mm.21739	NM_019742	ENSMUSG00000010054	Tusc2	1190001E22Rik|AA407686|Fus1|Lgcc|PAP|Pdap2	tumor suppressor candidate 2	protein-coding	0.0	8.0	0.5	0.0	8.0	0.5
Merged-chr18-84354958-2	chr18	84354458	84355458	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 4 of 8)	intron (NM_001033341, intron 4 of 8)	234546.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	0.0	5.0	6.0	0.0	0.0	2.0
Merged-chr13-112996646-2	chr13	112996146	112997146	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037914, intron 3 of 6)	intron (NM_001037914, intron 3 of 6)	2778.0	NM_001037914	622408.0	Mm.360976	NM_001037914	ENSMUSG00000074651	Mcidas	EG622408|Gm6320|Idas|Mci|Mcin	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140106645-2	chr5	140106145	140107145	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359025, intron 14 of 17)	RMER4B|LTR|ERVK	68273.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80010971-2	chr17	80010471	80011471	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	51297.0	NR_152119	72692.0	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-140664756-2	chr6	140664256	140665256	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009637, intron 8 of 8)	B3|SINE|B2	37871.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60710807-1	chr13	60710307	60711307	+	568.333313	f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	intron (NM_134062, intron 3 of 26)	75557.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0.0	0.0	0.0	0.0	2.5	1.0
Merged-chr2-84718695-2	chr2	84718214	84719214	+	568.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-3550.0	NM_144887	228136.0	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	0.0	8.0	1.5	0.0	3.0	1.5
Merged-chr10-127239499-2	chr10	127238954	127239954	+	568.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039000, intron 13 of 28)	CpG	23909.0	NM_008447	16572.0	Mm.30355	NM_008447	ENSMUSG00000074657	Kif5a	D10Bwg0738e|Khc|Kif5|Kns|mKIAA4086	kinesin family member 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80114123-3	chr7	80113588	80114588	+	568.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173011, intron 1 of 10)	intron (NM_173011, intron 1 of 10)	1262.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47587308-3	chr6	47586860	47587860	+	568.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007971, intron 1 of 19)	B2_Mm1a|SINE|B2	7670.0	NM_001146689	14056.0	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89209350-2	chr3	89208850	89209850	+	568.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008094)	TTS (NM_008094)	4985.0	NM_013604	17827.0	Mm.280943	NM_013604	ENSMUSG00000064068	Mtx1	Gcap6|Mtx	metaxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36749940-2	chr16	36749440	36750440	+	568.083374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_021301)	TTS (NM_021301)	35022.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70746520-1	chr17	70746020	70747020	+	568.0	f1_balb.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	100257.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	2.5	3.0	1.5	1.5	1.5	4.0
Merged-chr12-40569737-1	chr12	40569237	40570237	+	568.0	f0_balb.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	123684.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20642404-2	chr16	20641904	20642904	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139293, intron 12 of 18)	intron (NM_139293, intron 12 of 18)	-9248.0	NR_027485	21762.0	Mm.243234	NM_134101	ENSMUSG00000006998	Psmd2	9430095H01Rik|AA407121|TEG-190|Tex190	proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-135229678-1	chr6	135229178	135230178	+	568.0	f1_c57bl6.idr	intron (NM_001362111, intron 10 of 12)	RSINE1|SINE|B4	18206.0	NM_001080552	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	0.0	1.5	1.0	3.0	2.5	0.0
Merged-chr3-94476823-1	chr3	94476323	94477323	+	568.0	f0_balb.idr	Intergenic	Intergenic	-1472.0	NM_001289616	78784.0	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|ETR-1|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	2.5	0.5	4.0	1.5	0.0	0.5
Merged-chr7-80366103-1	chr7	80365603	80366603	+	568.0	f1_c57bl6.idr	intron (NM_172903, intron 9 of 23)	B1_Mur1|SINE|Alu	5272.0	NM_172903	140481.0	Mm.269245	NM_172903	ENSMUSG00000038886	Man2a2	1700052O22Rik|4931438M07Rik|AI480988|MX|Man IIx	mannosidase 2, alpha 2	protein-coding	6.0	0.5	3.0	0.0	3.0	9.5
Merged-chr2-135504231-2	chr2	135503731	135504731	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR25A|LTR|ERVK	78989.0	NR_015544	320684.0	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3472221-2	chr8	3471713	3472713	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029598, intron 1 of 8)	ORR1A3-int|LTR|ERVL-MaLR	1351.0	NM_029598	76406.0	Mm.74996	NM_029598	ENSMUSG00000040340	Tex45	1700019B03Rik	testis expressed 45	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr3-98142910-2	chr3	98142410	98143410	+	568.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010928, exon 31 of 34)	exon (NM_010928, exon 31 of 34)	-17724.0	NM_027665	71078.0	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72135068-2	chr6	72134568	72135568	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 3 of 6)	intron (NM_001035228, intron 3 of 6)	-11871.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-78228418-1	chr12	78227918	78228918	+	568.0	f1_c57bl6.idr	intron (NM_172952, intron 1 of 23)	intron (NM_172952, intron 1 of 23)	1763.0	NM_145965	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	8.5	22.0	9.0	11.0	15.0	9.5
Merged-chr3-28809558-1	chr3	28809058	28810058	+	568.0	f0_balb.idr	Intergenic	Intergenic	4050.0	NM_026517	68028.0	Mm.21724	NM_026517	ENSMUSG00000039221	Rpl22l1	3110001N18Rik|AU041196	ribosomal protein L22 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-164458345-2	chr1	164457800	164458800	+	568.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009721)	promoter-TSS (NM_009721)	55.0	NM_009721	11931.0	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98165274-2	chr12	98164774	98165774	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94185.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-96510619-1	chr7	96510119	96511119	+	568.0	f0_balb.idr	intron (NM_001310762, intron 4 of 32)	intron (NM_001310762, intron 4 of 32)	-168655.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8841670-2	chr10	8841170	8842170	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	RMER10B|LTR|ERVL	44400.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	2.5	5.5	1.0	11.5	6.0	5.5
Merged-chr2-35450413-1	chr2	35449913	35450913	+	568.0	f0_c57.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	11036.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156675691-1	chr1	156675191	156676191	+	568.0	f1_balb.idr	Intergenic	L1M2|LINE|L1	-1352.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	44.0	99.0	71.5	63.0	152.5	132.5
Merged-chr2-153544802-2	chr2	153544302	153545302	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14831.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	32.0	82.0	64.5	47.5	102.0	64.0
Merged-chr15-3582360-2	chr15	3581860	3582860	+	568.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286370)	promoter-TSS (NM_001286370)	-518.0	NM_001286370	14600.0	Mm.3986	NM_010284	ENSMUSG00000055737	Ghr	GHBP|GHR/BP	growth hormone receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121170823-2	chr3	121170323	121171323	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028456, intron 1 of 4)	B3|SINE|B2	872.0	NM_028456	66568.0	Mm.263163	NM_025637	ENSMUSG00000028133	Rwdd3	2510027J23Rik|3110037C01Rik|AI035684|AI662458|Rsume|X2CR1	RWD domain containing 3	protein-coding	0.0	2.0	1.0	0.0	0.0	1.0
Merged-chr1-46905073-1	chr1	46904573	46905573	+	568.0	f0_balb.idr	intron (NM_001356417, intron 1 of 10)	ORR1E|LTR|ERVL-MaLR	20703.0	NM_001356417	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150188425-1	chr4	150187925	150188925	+	568.0	f0_balb.idr	intron (NM_009802, intron 7 of 7)	B4A|SINE|B4	12710.0	NM_009802	12353.0	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	6.0	2.0	7.0	0.0	0.0	12.5
Merged-chr2-46521024-1	chr2	46520524	46521524	+	568.0	f0_balb.idr	Intergenic	Intergenic	824419.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43338504-3	chr17	43338034	43339034	+	568.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21897.0	NM_001357332	224792.0	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	0.0	27.5	8.5	8.0	5.5	2.0
Merged-chr15-103053305-1	chr15	103052805	103053805	+	568.0	f1_balb.idr	Intergenic	Intergenic	18910.0	NM_013553	15423.0	Mm.1351	NM_013553	ENSMUSG00000075394	Hoxc4	Hox-3.5	homeobox C4	protein-coding	0.0	0.0	0.0	1.0	2.5	0.0
Merged-chr14-72644793-1	chr14	72644293	72645293	+	568.0	f0_balb.idr	intron (NM_207636, intron 3 of 25)	intron (NM_207636, intron 3 of 25)	65210.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-115040594-3	chr7	115040090	115041090	+	568.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89316.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	34.0	34.0	26.5	32.5	66.0	25.5
Merged-chr6-87805696-2	chr6	87805196	87806196	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_104478, intron 1 of 2)	intron (NR_104478, intron 1 of 2)	4061.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111372862-2	chr12	111372362	111373362	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183016, intron 1 of 36)	B1_Mus2|SINE|Alu	4856.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4367967-2	chr18	4367467	4368467	+	568.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040328, exon 3 of 4)	non-coding (NR_040328, exon 3 of 4)	-7625.0	NM_001361008	67440.0	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122260395-2	chr8	122259895	122260895	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21746.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	5.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46824424-2	chr8	46823924	46824924	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008391, intron 6 of 8)	MERVL_2A-int|LTR|ERVL	84679.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-103356020-1	chr12	103355520	103356520	+	568.0	f0_balb.idr	promoter-TSS (NM_023049)	promoter-TSS (NM_023049)	-19.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80812723-2	chr10	80812223	80813223	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028001, intron 1 of 6)	intron (NM_028001, intron 1 of 6)	775.0	NM_028001	71912.0	Mm.45137	NM_028001	ENSMUSG00000020216	Jsrp1	2300003C06Rik|2310032K21Rik|JP-45|JP45	junctional sarcoplasmic reticulum protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39851754-2	chr1	39851254	39852254	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Ala-GCY_|tRNA|tRNA	-4424.0	NR_040465	73426.0	Mm.396239	NR_040465	ENSMUSG00000101634	1700066B17Rik	-	RIKEN cDNA 1700066B17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-151035744-2	chr2	151035244	151036244	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026086, intron 1 of 1)	ID_B1|SINE|B4	3635.0	NM_026086	67311.0	Mm.480682	NM_026086	ENSMUSG00000053916	Nanp	1600031M04Rik|Hdhd4	N-acetylneuraminic acid phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34021277-1	chr17	34020777	34021777	+	568.0	f1_c57bl6.idr	3' UTR (NM_009066, exon 7 of 7)	3' UTR (NM_009066, exon 7 of 7)	3403.0	NM_009066	19763.0	Mm.20343	NM_009066	ENSMUSG00000024325	Ring1	Ring1A	ring finger protein 1	protein-coding	0.0	0.5	2.0	8.0	1.0	1.0
Merged-chr7-27176732-2	chr7	27176232	27177232	+	568.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037283)	promoter-TSS (NR_037283)	-639.0	NR_037283	100526505.0		NR_037283	ENSMUSG00000093348	Mir3101	mir-3101|mmu-mir-3101	microRNA 3101	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105426098-2	chr4	105425596	105426596	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	268749.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	2.5	0.5	0.5	0.0	0.0	0.0
Merged-chr13-113443521-2	chr13	113443021	113444021	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	59323.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113620228-2	chr13	113619728	113620728	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1664.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5712028-2	chr13	5711528	5712528	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146064.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38575124-1	chr18	38574624	38575624	+	568.0	f1_c57bl6.idr	Intergenic	Intergenic	26144.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148691080-1	chr4	148690580	148691580	+	568.0	f1_balb.idr	Intergenic	B4A|SINE|B4	47763.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	2.5	2.5	0.0	4.5	2.5	0.0
Merged-chr16-67782976-1	chr16	67782476	67783476	+	568.0	f1_balb.idr	Intergenic	Lx2|LINE|L1	-162068.0	NM_178721	239857.0	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.5	0.0	2.5
Merged-chr3-121579545-2	chr3	121579045	121580045	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47201.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25082678-2	chr7	25082178	25083178	+	568.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001168506, exon 3 of 3)	3' UTR (NM_001168506, exon 3 of 3)	5871.0	NM_175477	232976.0	Mm.41568	NM_175477	ENSMUSG00000045252	Zfp574	A630056B21Rik|Znf574	zinc finger protein 574	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59155596-1	chr11	59155096	59156096	+	568.0	f1_balb.idr	3' UTR (NM_173785, exon 3 of 3)	3' UTR (NM_173785, exon 3 of 3)	8149.0	NM_001270791	216792.0	Mm.266175	NM_173785	ENSMUSG00000049287	Iba57	4930543L23Rik|A230051G13Rik|C1orf69	IBA57 homolog, iron-sulfur cluster assembly	protein-coding	0.0	0.0	4.0	2.0	2.0	2.0
Merged-chr2-73521992-2	chr2	73521492	73522492	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	7495.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118747125-2	chr9	118746625	118747625	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	B3A|SINE|B2	35433.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	1.0	9.0	7.5	17.0	14.5	15.5
Merged-chr16-57230110-2	chr16	57229610	57230610	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 1 of 17)	intron (NM_026254, intron 1 of 17)	1356.0	NM_026254	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87458630-2	chr6	87458130	87459130	+	568.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175476)	TTS (NM_175476)	29636.0	NM_009756	12154.0	Mm.483321	NM_009756	ENSMUSG00000030046	Bmp10	b2b2711Clo	bone morphogenetic protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-58711948-1	chr7	58711448	58712448	+	568.0	f0_balb.idr	intron (NM_009728, intron 1 of 20)	intron (NM_009728, intron 1 of 20)	53746.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	9.0	0.0	2.0	0.0	2.5	4.0
Merged-chr10-93464412-1	chr10	93463912	93464912	+	568.0	f0_balb.idr	intron (NM_008517, intron 3 of 18)	intron (NM_008517, intron 3 of 18)	11016.0	NM_008517	16993.0	Mm.271071	NM_008517	ENSMUSG00000015889	Lta4h	-	leukotriene A4 hydrolase	protein-coding	0.0	0.0	0.0	13.5	3.5	15.0
Merged-chr5-140622675-2	chr5	140622175	140623175	+	568.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175274, exon 14 of 14)	3' UTR (NM_175274, exon 14 of 14)	15334.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14237545-1	chr2	14237045	14238045	+	568.0	f0_balb.idr	intron (NM_008625, intron 1 of 29)	intron (NM_008625, intron 1 of 29)	8131.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128380724-2	chr7	128380224	128381224	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 4 of 4)	intron (NM_026418, intron 4 of 4)	37448.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-67213157-2	chr8	67212657	67213657	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-277601.0	NM_008673	17960.0	Mm.14125	NM_008673	ENSMUSG00000025588	Nat1	Nat-1	N-acetyl transferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-30840286-1	chr8	30839786	30840786	+	568.0	f0_c57.idr	Intergenic	Intergenic	-249241.0	NM_025869	66959.0	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding	8.0	4.5	1.0	0.5	0.0	0.0
Merged-chr2-26470639-2	chr2	26470139	26471139	+	568.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105962)	promoter-TSS (NR_105962)	-520.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6791737-1	chr2	6791237	6792237	+	568.0	f0_balb.idr	intron (NM_001110232, intron 3 of 15)	intron (NM_001110232, intron 3 of 15)	-70075.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-30402614-2	chr6	30402114	30403114	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311087, intron 1 of 8)	(TG)n|Simple_repeat|Simple_repeat	759.0	NM_001311087	76788.0	Mm.277308	NM_029742	ENSMUSG00000029775	Klhdc10	2410127E18Rik|AI593221|mKIAA0265	kelch domain containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92971236-2	chr1	92970736	92971736	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1883.0	NM_001104529	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180229214-2	chr1	180228714	180229714	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128605, intron 9 of 10)	intron (NM_001128605, intron 9 of 10)	16736.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-41947963-1	chr18	41947463	41948463	+	568.0	f1_balb.idr	intron (NM_029942, intron 1 of 6)	intron (NM_029942, intron 1 of 6)	3231.0	NM_029942	77619.0	Mm.30649	NM_029942	ENSMUSG00000056671	Prelid2	1700003A01Rik|C330008K14Rik	PRELI domain containing 2	protein-coding	5.5	9.0	6.0	1.0	3.0	2.5
Merged-chr2-155075321-1	chr2	155074821	155075821	+	568.0	f1_balb.idr	promoter-TSS (NM_016661)	promoter-TSS (NM_016661)	-824.0	NM_016661	269378.0	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	0.0	0.0	0.0	8.5	10.5	1.0
Merged-chr5-101955245-1	chr5	101954745	101955745	+	568.0	f1_balb.idr	intron (NM_172882, intron 7 of 66)	intron (NM_172882, intron 7 of 66)	114676.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	3.0	4.5	5.5	7.5	5.5	8.0
Merged-chr5-101861501-1	chr5	101861001	101862001	+	568.0	f1_c57bl6.idr	intron (NM_172882, intron 52 of 66)	intron (NM_172882, intron 52 of 66)	96371.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	5.0	0.0	1.0	7.5	4.5	1.5
Merged-chr14-61666792-2	chr14	61666292	61667292	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	15581.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58643624-1	chr11	58643124	58644124	+	568.0	f1_balb.idr	intron (NM_001039047, intron 2 of 5)	intron (NM_001039047, intron 2 of 5)	3159.0	NM_001039047	216781.0	Mm.339507	NM_001039047	ENSMUSG00000037124	Trim58	Gm16|Gm1783	tripartite motif-containing 58	protein-coding	4.0	3.5	1.5	6.0	0.5	2.0
Merged-chr5-39852825-1	chr5	39852325	39853325	+	568.0	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-208194.0	NM_010474	15476.0	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-63897683-1	chr7	63897183	63898183	+	568.0	f0_balb.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-19174.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150092047-2	chr4	150091547	150092547	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177366, intron 1 of 3)	intron (NM_177366, intron 1 of 3)	4544.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83041297-1	chr6	83040797	83041797	+	568.0	f1_c57bl6.idr	intron (NM_013586, intron 4 of 13)	PB1D10|SINE|Alu	7073.0	NM_013586	16950.0	Mm.380433	NM_013586	ENSMUSG00000000693	Loxl3	Lor2|Loxl2	lysyl oxidase-like 3	protein-coding	119.5	221.5	166.5	77.0	117.0	107.5
Merged-chr7-74935914-2	chr7	74935414	74936414	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94297.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-7591781-1	chr1	7591281	7592281	+	568.0	f1_c57bl6.idr	Intergenic	Intergenic	502861.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	5.0	4.0	1.0	0.0	0.5	7.5
Merged-chr15-47450278-2	chr15	47449778	47450778	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	826973.0	NR_045811	75281.0	Mm.159487	NR_045811	ENSMUSG00000051198	4930548G14Rik	-	RIKEN cDNA 4930548G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114722504-2	chr5	114722004	114723004	+	568.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029992)	TTS (NM_029992)	2989.0	NR_105995	102465622.0		NR_105995	ENSMUSG00000098656	Mir7028	Gm27674|mmu-mir-7028	microRNA 7028	ncRNA	0.0	0.0	7.5	6.0	13.5	5.5
Merged-chr11-120490446-2	chr11	120489946	120490946	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1391.0	NM_013770	27376.0	Mm.3991	NM_013770	ENSMUSG00000025792	Slc25a10	Dic	solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-12919826-2	chr7	12919326	12920326	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-2485.0	NM_009095	20103.0	Mm.5291	NM_009095	ENSMUSG00000012848	Rps5	AA617411	ribosomal protein S5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20263193-1	chr11	20262693	20263693	+	568.0	f0_balb.idr	Intergenic	Intergenic	-13769.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	2.5	0.0	6.5	1.5	0.0	0.0
Merged-chr3-116652254-1	chr3	116651754	116652754	+	568.0	f1_c57bl6.idr	intron (NM_008246, intron 1 of 11)	Tigger5b|DNA|TcMar-Tigger	10423.0	NM_008246	15247.0	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	3.5	15.0	11.0	1.5	7.5	2.0
Merged-chr9-47719185-1	chr9	47718685	47719685	+	568.0	f0_balb.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	99023.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	23.5	39.5	31.0	24.5	26.0	40.5
Merged-chr2-102201679-1	chr2	102201179	102202179	+	568.0	f0_balb.idr	Intergenic	Intergenic	-15219.0	NM_001290784	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-22129793-1	chr15	22129293	22130293	+	568.0	f0_balb.idr	Intergenic	RMER19B2|LTR|ERVK	585191.0	NM_001165971	545091.0	Mm.475598	NM_001165971		Hnrnpa1l2-ps2	EG545091|Gm5803	heterogeneous nuclear ribonucleoprotein A1-like 2, pseudogene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-25455659-2	chr5	25455159	25456159	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081383, intron 1 of 58)	RSINE1|SINE|B4	43124.0	NM_001081383	231051.0	Mm.332268	NM_001081383	ENSMUSG00000038056	Kmt2c	E330008K23Rik|HALR|Mll3|mKIAA1506	lysine (K)-specific methyltransferase 2C	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr1-172196131-2	chr1	172195631	172196631	+	568.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001329869)	TTS (NM_001329869)	10673.0	NM_001329871	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	23.0	35.0	18.5	12.0	35.0	18.5
Merged-chr4-149296229-1	chr4	149295729	149296729	+	568.0	f1_c57bl6.idr	intron (NM_008441, intron 1 of 20)	MTA_Mm|LTR|ERVL-MaLR	11469.0	NM_207682	16561.0	Mm.402393	NM_008441	ENSMUSG00000063077	Kif1b	A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204	kinesin family member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170478385-1	chr1	170477885	170478885	+	568.0	f0_balb.idr	intron (NM_001109985, intron 2 of 9)	intron (NM_001109985, intron 2 of 9)	78725.0	NM_027528	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104655656-1	chr3	104655156	104656156	+	568.0	f1_balb.idr	exon (NM_009196, exon 5 of 5)	exon (NM_009196, exon 5 of 5)	16992.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-75810107-1	chr13	75809607	75810607	+	568.0	f0_c57.idr	Intergenic	RLTR35B_MM|LTR|ERVL	-29778.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	2.0	2.0	0.0	0.0	7.0	1.5
Merged-chr16-83441943-2	chr16	83441443	83442443	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-929200.0	NR_040567	75247.0	Mm.417813	NR_040567		4930553E22Rik	-	RIKEN cDNA 4930553E22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-16889221-1	chr12	16888721	16889721	+	568.0	f1_balb.idr	Intergenic	Intergenic	-5757.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	0.0	6.0	3.5	7.5	1.5	0.0
Merged-chr8-120133735-2	chr8	120133235	120134235	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172286, intron 1 of 12)	intron (NM_172286, intron 1 of 12)	-11194.0	NM_001163760	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113659423-2	chr6	113658923	113659923	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	ID_B1|SINE|B4	20956.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105703018-2	chr8	105702518	105703518	+	568.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_198299)	TTS (NM_198299)	1371.0	NM_001286345	56513.0	Mm.472753	NM_019695	ENSMUSG00000005699	Pard6a	0710008C04Rik|2610010A15Rik|PAR-6A|PAR6alpha|Par-6|Par6|Par6c|TAX40|Tip-40	par-6 family cell polarity regulator alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38911953-1	chr18	38911453	38912453	+	568.0	f0_balb.idr	intron (NM_001033789, intron 3 of 4)	intron (NM_001033789, intron 3 of 4)	6746.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	0.0	2.0	1.5	5.5	5.5	2.5
Merged-chr11-63811276-1	chr11	63810776	63811776	+	568.0	f0_balb.idr	Intergenic	Intergenic	111008.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	15.5	1.0	2.0	2.0	0.0	4.0
Merged-chr17-47716528-2	chr17	47716028	47717028	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10314.0	NM_025973	109820.0	Mm.22957	NM_025973	ENSMUSG00000023987	Pgc	2210410L06Rik|Upg-1|Upg1	progastricsin (pepsinogen C)	protein-coding	1.0	0.0	0.5	2.5	4.0	0.5
Merged-chr13-40737204-2	chr13	40736704	40737704	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2284.0	NM_001301674	21418.0	Mm.85544	NM_011547	ENSMUSG00000021359	Tfap2a	AP-2|AP2alpha|Ap-2 (a)|Ap2|Ap2tf|Tcfap2a	transcription factor AP-2, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-29612134-2	chr4	29611634	29612634	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	544055.0	NR_151693	102634169.0		NR_151693		Gm11917	-	predicted gene 11917	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-140162581-2	chr2	140162103	140163103	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081090, intron 3 of 13)	B1_Mus2|SINE|Alu	7955.0	NM_001081090	66580.0	Mm.21228	NM_001081090	ENSMUSG00000045624	Esf1	2610101J03Rik|ABTAP|AW545818|C79684	ESF1 nucleolar pre-rRNA processing protein homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88503880-1	chr4	88503380	88504380	+	568.0	f0_balb.idr	Intergenic	Intergenic	18914.0	NM_010510	15977.0	Mm.1245	NM_010510	ENSMUSG00000048806	Ifnb1	IFN-beta|IFNB|Ifb	interferon beta 1, fibroblast	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-14630930-1	chr19	14630430	14631430	+	568.0	f0_c57.idr	Intergenic	RLTR10D|LTR|ERVK	-32747.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-91228464-2	chr13	91227964	91228964	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4477.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16121658-2	chr1	16121158	16122158	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133832, intron 2 of 5)	RLTR11A2|LTR|ERVK	15776.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0.0	3.5	2.0	8.0	6.0	2.0
Merged-chr16-4304177-2	chr16	4303677	4304677	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009624, intron 7 of 10)	intron (NM_009624, intron 7 of 10)	74948.0	NR_003628	436332.0	Mm.478141	NM_001013830	ENSMUSG00000089645	Gm5766	EG436332	ribosomal protein L7a pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-96891856-2	chr7	96891356	96892356	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 29 of 32)	B4|SINE|B4	-59671.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-86439189-2	chr7	86438689	86439689	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-26224.0	NM_001011767	257929.0	Mm.377305	NM_001011767	ENSMUSG00000020168	Olfr299	MOR221-2	olfactory receptor 299	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127082619-1	chr2	127082119	127083119	+	568.0	f1_balb.idr	intron (NM_026678, intron 2 of 7)	intron (NM_026678, intron 2 of 7)	11962.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	3.5	2.0	4.5	0.0	11.5	9.5
Merged-chr4-154162941-2	chr4	154162441	154163441	+	567.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2257.0	NM_026388	67808.0	Mm.288737	NM_026388	ENSMUSG00000029030	Tprgl	1200015A19Rik|Svap30|Tprg1l|mover	transformation related protein 63 regulated like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63216591-2	chr4	63216069	63217069	+	567.75	f0_balb.idr|f1_balb.idr	intron (NM_025685, intron 1 of 60)	intron (NM_025685, intron 1 of 60)	1157.0	NM_025685	373864.0	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	0.0	4.5	0.0	0.0	0.0	1.5
Merged-chr17-5595269-2	chr17	5594769	5595769	+	567.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	102669.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131177606-2	chr2	131177106	131178106	+	567.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007682, exon 1 of 1)	3' UTR (NM_007682, exon 1 of 1)	2461.0	NM_007682	12616.0	Mm.440169	NM_007682	ENSMUSG00000068267	Cenpb	CENP-B	centromere protein B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-60500863-2	chr17	60500354	60501354	+	567.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-1487532.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86209452-3	chr6	86208952	86209952	+	567.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031199, intron 1 of 5)	intron (NM_031199, intron 1 of 5)	14225.0	NM_031199	21802.0	Mm.137222	NM_031199	ENSMUSG00000029999	Tgfa	wa-1|wa1	transforming growth factor alpha	protein-coding	0.5	1.0	6.0	0.0	2.0	0.5
Merged-chr8-46939486-2	chr8	46938986	46939986	+	567.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-47401.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-73283902-2	chr5	73283402	73284402	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040688, intron 1 of 3)	Lx9|LINE|L1	282.0	NR_040689	72276.0	Mm.271215	NR_040687	ENSMUSG00000100175	1700025M24Rik	-	RIKEN cDNA 1700025M24 gene	ncRNA	0.0	3.5	0.5	1.5	0.0	0.5
Merged-chr15-88746358-2	chr15	88745871	88746871	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-5340.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	4.5	8.0	0.5	2.5	7.0	2.5
Merged-chr13-67270143-2	chr13	67269642	67270642	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1074.0	NM_001001152	238690.0	Mm.306358	NM_001001152	ENSMUSG00000055480	Zfp458	BC062958|Gm33446|Rslcan-7|Znf728|mszf59-2	zinc finger protein 458	protein-coding	4.5	26.5	11.0	0.0	6.5	7.0
Merged-chr17-44458752-2	chr17	44458252	44459252	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	270180.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86607656-2	chr6	86607156	86608156	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20518.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-69140558-2	chr2	69140058	69141058	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181547, intron 1 of 15)	intron (NM_181547, intron 1 of 15)	4758.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114730679-2	chr11	114730179	114731179	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034878, intron 1 of 12)	B3|SINE|B2	3267.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70813423-2	chr8	70812923	70813923	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008353, intron 6 of 15)	intron (NM_008353, intron 6 of 15)	4974.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	0.0	1.5	1.5	0.0	0.0	1.5
Merged-chr14-115345731-2	chr14	115345231	115346231	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175500, intron 2 of 7)	RMER5|LTR|ERV1	63821.0	NR_045761	75088.0	Mm.444706	NR_045761	ENSMUSG00000093551	4930505G20Rik	-	RIKEN cDNA 4930505G20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60416039-2	chr11	60415539	60416539	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145427, intron 1 of 7)	intron (NM_145427, intron 1 of 7)	1060.0	NM_145427	246782.0	Mm.41651	NM_145427	ENSMUSG00000042709	Atpaf2	ATP12|ATP12p	ATP synthase mitochondrial F1 complex assembly factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122426244-2	chr8	122425744	122426744	+	567.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_007806, exon 5 of 6)	exon (NM_007806, exon 5 of 6)	4224.0	NM_145834	234836.0	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10828701-2	chr19	10828201	10829201	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009852, intron 1 of 12)	intron (NM_009852, intron 1 of 12)	1357.0	NM_001037801	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145910105-2	chr6	145909605	145910605	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21768.0	NM_001310837	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27496648-2	chr2	27496148	27497148	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MURVY-int|LTR|ERV1	-18499.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105861437-2	chr8	105860937	105861937	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357230, intron 1 of 4)	intron (NM_001357230, intron 1 of 4)	562.0	NM_001357230	68051.0	Mm.455474	NM_026532	ENSMUSG00000008450	Nutf2	2700067I02Rik|AI115459|AI413596|AW546000|Ntf2|Ntf3|PP15	nuclear transport factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-3405722-3	chr9	3405213	3406213	+	567.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027545, intron 1 of 17)	Lx2B|LINE|L1	1628.0	NM_027545	244672.0	Mm.245482	NM_027545	ENSMUSG00000025898	Cwf19l2	3230401L03Rik|9030209E10	CWF19-like 2, cell cycle control (S. pombe)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-35378833-2	chr5	35378333	35379333	+	567.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_152157)	TTS (NR_152157)	9643.0	NR_152157	442795.0	Mm.332328	NR_152157	ENSMUSG00000055944	E130018O15Rik	-	RIKEN cDNA E130018O15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25947441-2	chr17	25946941	25947941	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358019, intron 2 of 2)	intron (NM_001358019, intron 2 of 2)	-2510.0	NM_001039038	621239.0	Mm.381070	NM_001039038	ENSMUSG00000090113	Nhlrc4	F430201B04Rik	NHL repeat containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-79552589-2	chr14	79552089	79553089	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 2 of 8)	intron (NM_007920, intron 2 of 8)	-35071.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102507575-2	chr15	102507075	102508075	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009582, intron 1 of 13)	ID_B1|SINE|B4	3125.0	NM_001358844	26404.0	Mm.172897	NM_009582	ENSMUSG00000023050	Map3k12	DLK|MUK|Zpk	mitogen-activated protein kinase kinase kinase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80604831-2	chr10	80604331	80605331	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019575, intron 1 of 6)	intron (NM_019575, intron 1 of 6)	1949.0	NM_019575	56214.0	Mm.273170	NM_019575	ENSMUSG00000113949	Scamp4	2410022D05Rik|AI448940|AU022392|AW742369|Sc4	secretory carrier membrane protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126428265-2	chr7	126427765	126428765	+	567.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030566)	promoter-TSS (NM_030566)	-502.0	NM_030566	70314.0	Mm.35467	NM_030566	ENSMUSG00000030727	Rabep2	2610011A08Rik|AI462746|Fra	rabaptin, RAB GTPase binding effector protein 2	protein-coding	0.5	0.5	0.0	0.0	0.0	0.5
Merged-chr8-122378278-2	chr8	122377778	122378778	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029993, intron 1 of 18)	PB1D9|SINE|Alu	1662.0	NM_001029993	76014.0	Mm.241489	NM_001029993	ENSMUSG00000017478	Zc3h18	1190001B23Rik|5830416A07Rik|Nhn1	zinc finger CCCH-type containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63719412-2	chr4	63718912	63719912	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	25701.0	NM_177371	326623.0	Mm.208152	NM_177371	ENSMUSG00000050395	Tnfsf15	Tl1|Tl1a|Tnlg1b|Vegi	tumor necrosis factor (ligand) superfamily, member 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80152141-2	chr12	80151641	80152641	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19297.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-40266970-2	chr1	40266470	40267470	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001123382, intron 1 of 10)	intron (NM_001123382, intron 1 of 10)	384.0	NM_001123382	16177.0	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135738478-2	chr7	135737975	135738975	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22096.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-105482794-2	chr11	105482294	105483294	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26059.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44400839-2	chr9	44400339	44401339	+	567.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_106053)	TTS (NR_106053)	416.0	NR_106053	102465658.0		NR_106053	ENSMUSG00000099309	Mir7085	Gm27423|mmu-mir-7085	microRNA 7085	ncRNA	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr1-157372726-2	chr1	157372226	157373226	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177644, intron 1 of 17)	intron (NM_177644, intron 1 of 17)	-39626.0	NR_027984	69953.0	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	2.0	14.0	14.5	2.0	5.5	5.0
Merged-chr1-86300629-2	chr1	86300129	86301129	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2592.0	NM_145222	227327.0	Mm.86467	NM_145222	ENSMUSG00000079445	B3gnt7	C330001H22Rik|beta-3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21133184-2	chr9	21132684	21133684	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-1909.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-25879419-2	chr18	25878919	25879919	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-125262.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25821050-2	chr15	25820550	25821550	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6C|LTR|ERVK	-22248.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115774738-2	chr6	115774238	115775238	+	567.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106120)	promoter-TSS (NR_106120)	181.0	NM_025958	67088.0	Mm.277683	NM_025958	ENSMUSG00000030319	Cand2	2210404G23Rik|Tp120b|mKIAA0667	cullin-associated and neddylation-dissociated 2 (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88106887-2	chr6	88106387	88107387	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2629.0	NR_105795	102465196.0		NR_105795	ENSMUSG00000099095	Mir6376	Gm27778|mmu-mir-6376	microRNA 6376	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-58583279-2	chr18	58582776	58583776	+	567.5	f0_balb.idr|f1_balb.idr	intron (NM_001081072, intron 4 of 9)	intron (NM_001081072, intron 4 of 9)	27036.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	6.5	30.5	28.0	25.5	60.0	26.0
Merged-chr7-83768010-2	chr7	83767510	83768510	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	26829.0	NM_029335	75556.0	Mm.17649	NM_029335	ENSMUSG00000011154	Cfap161	1700026D08Rik|AW047638|AW551802	cilia and flagella associated protein 161	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-97881858-2	chr13	97881361	97882361	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	130749.0	NR_152263	111365222.0	Mm.440079	NR_152263		Eyelinc18	-	uncharacterized EyeLinc18	ncRNA	5.0	2.0	3.0	0.0	0.0	0.0
Merged-chr10-32218873-2	chr10	32218373	32219373	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025286, intron 3 of 3)	Lx3B|LINE|L1	-609148.0	NM_001146349	268291.0	Mm.295212	NM_001146349	ENSMUSG00000063760	Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131254602-2	chr2	131254102	131255102	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-7406.0	NM_001355681	74450.0	Mm.101264	NM_153501	ENSMUSG00000037514	Pank2	4933409I19Rik|AI642621	pantothenate kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-82801726-2	chr1	82801226	82802226	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33270.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12217523-2	chr15	12217023	12218023	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356498, intron 1 of 15)	intron (NM_001356498, intron 1 of 15)	12495.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64815216-2	chr5	64814716	64815716	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	11693.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-22595488-2	chr19	22594988	22595988	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177341, intron 1 of 26)	intron (NM_177341, intron 1 of 26)	-97131.0	NM_001035245	226025.0	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding	0.0	0.0	8.5	1.0	1.5	2.5
Merged-chr6-137395851-2	chr6	137395351	137396351	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 10 of 26)	intron (NM_011216, intron 10 of 26)	-14870.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34769554-2	chr11	34769054	34770054	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 1 of 51)	intron (NM_033374, intron 1 of 51)	14351.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-106499082-2	chr3	106498582	106499582	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001093754, intron 9 of 11)	intron (NM_001093754, intron 9 of 11)	13042.0	NM_028110	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	1.0	13.5	1.5	0.5	3.0	5.5
Merged-chr11-48789990-2	chr11	48789490	48790490	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10370.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95975001-2	chr15	95974501	95975501	+	567.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001253813, exon 21 of 21)	3' UTR (NM_001253813, exon 21 of 21)	104552.0	NR_126493	402773.0	Mm.210567	NM_001033483	ENSMUSG00000078925	D030018L15Rik	-	nuclear receptor coactivator 2 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-48628775-2	chr19	48628275	48629275	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025696, intron 5 of 26)	intron (NM_025696, intron 5 of 26)	422750.0	NM_025696	66673.0	Mm.70980	NM_025696	ENSMUSG00000063434	Sorcs3	6330404A12Rik|AW045579	sortilin-related VPS10 domain containing receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87973287-2	chr17	87972787	87973787	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1763.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59712804-2	chr15	59712304	59713304	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64150.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3053300-2	chr4	3052800	3053800	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118783.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-71215402-2	chr9	71214902	71215902	+	567.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009022)	promoter-TSS (NM_009022)	-16.0	NR_110518	100041660.0	Mm.487231	NR_110518		Gm3458	-	predicted gene 3458	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113769256-2	chr5	113768756	113769756	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151532, intron 1 of 16)	RSINE1|SINE|B4	3144.0	NR_151532	53890.0	Mm.29594	NM_016926	ENSMUSG00000018974	Sart3	AU045857|mKIAA0156	squamous cell carcinoma antigen recognized by T cells 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80617411-2	chr10	80616911	80617911	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5369.0	NM_134002	103236.0	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-50517525-2	chr2	50517025	50518025	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	162500.0	NR_154590	102634280.0		NR_154590		Gm48908	-	predicted gene 48908	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-24676871-1	chr1	24676371	24677371	+	567.5	f0_balb.idr	Intergenic	Intergenic	-1673.0	NM_026719	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27436473-2	chr2	27435973	27436973	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-5963.0	NM_001360791	100504116.0	Mm.36529	NM_001360790		Brd3os	A230069D13|D2Bwg1423e|Gm20071	bromodomain containing 3, opposite strand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62886092-2	chr9	62885592	62886592	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 12 of 13)	PB1D11|SINE|Alu	-24068.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95678293-2	chr3	95677793	95678793	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301705, intron 14 of 17)	intron (NM_001301705, intron 14 of 17)	9624.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8919814-2	chr3	8919314	8920314	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025434, intron 1 of 2)	RSINE1|SINE|B4	4043.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32838089-2	chr18	32837589	32838589	+	567.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045381)	promoter-TSS (NR_045381)	-802.0	NR_045381	75795.0	Mm.382634	NR_045381	ENSMUSG00000097553	4930455D15Rik	-	RIKEN cDNA 4930455D15 gene	ncRNA	5.5	14.5	13.0	3.0	11.0	13.5
Merged-chr3-88510917-2	chr3	88510417	88511417	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-7565.0	NM_001002011	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17883248-2	chr17	17882748	17883748	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013521, intron 1 of 1)	intron (NM_013521, intron 1 of 1)	691.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-30425891-2	chr15	30425391	30426391	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 2 of 21)	intron (NM_001355502, intron 2 of 21)	253298.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171034436-2	chr1	171033936	171034936	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15510.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55697130-2	chr16	55696630	55697630	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125008.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78374882-2	chr10	78374382	78375382	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23182.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94135635-2	chr11	94135135	94136135	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75819.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110608700-3	chr11	110608193	110609193	+	567.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	129353.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0.0	0.0	4.5	0.0	0.0	2.5
Merged-chr4-146494179-2	chr4	146493714	146494714	+	567.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7786.0	NM_001243138	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84105380-2	chr17	84104880	84105880	+	567.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26720.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34514896-2	chr19	34514396	34515396	+	567.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	Lx8|LINE|L1	12578.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-121053949-2	chr6	121053460	121054460	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270475, intron 1 of 31)	intron (NM_001270475, intron 1 of 31)	-10504.0	NR_138098	100043793.0	Mm.448053	NR_138098		Gm4651	-	predicted gene 4651	ncRNA	1.5	0.0	4.0	0.0	0.5	0.0
Merged-chr2-31079688-2	chr2	31079188	31080188	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	16812.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127035110-1	chr3	127034610	127035610	+	567.0	f1_c57bl6.idr	intron (NM_001327938, intron 10 of 47)	intron (NM_001327938, intron 10 of 47)	-36658.0	NM_178655	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.0	0.5	2.5	9.5	4.5	14.5
Merged-chr5-108660312-1	chr5	108659812	108660812	+	567.0	f0_c57.idr	promoter-TSS (NM_172997)	promoter-TSS (NM_172997)	-19.0	NM_008325	15932.0	Mm.358608	NM_008325	ENSMUSG00000033540	Idua	6030426D08	iduronidase, alpha-L-	protein-coding	6.5	14.0	10.0	6.0	13.0	12.0
Merged-chr5-113654412-2	chr5	113653912	113654912	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4022.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69361283-2	chr11	69360783	69361783	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146019, intron 7 of 39)	intron (NM_146019, intron 7 of 39)	8143.0	NM_146019	216848.0	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	3.5	0.0	7.5	2.5	3.5	0.0
Merged-chr2-153343670-1	chr2	153343170	153344170	+	567.0	f1_balb.idr	intron (NR_040318, intron 1 of 1)	MLT1E2|LTR|ERVL-MaLR	2140.0	NR_040318	72326.0	Mm.400102	NR_040318	ENSMUSG00000073236	2500004C02Rik	-	RIKEN cDNA 2500004C02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171658151-1	chr1	171657651	171658651	+	567.0	f1_balb.idr	Intergenic	Intergenic	-5114.0	NM_144539	75345.0	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	4.5	14.0	19.5	20.0	7.0	9.5
Merged-chr13-20111959-1	chr13	20111459	20112459	+	567.0	f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	(TG)n|Simple_repeat|Simple_repeat	21452.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	5.0	4.5	5.0	1.0	3.0	2.5
Merged-chr10-79705877-2	chr10	79705377	79706377	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077184, intron 1 of 6)	intron (NM_001077184, intron 1 of 6)	1519.0	NM_009768	12215.0	Mm.726	NM_009768	ENSMUSG00000023175	Bsg	AI115436|AI325119|CD147|EMMPRIN|HT-7	basigin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24745240-1	chr17	24744740	24745740	+	567.0	f1_c57bl6.idr	Intergenic	RLTR11D|LTR|ERVK	-7748.0	NM_001357342	328779.0	Mm.328848	NM_001012402	ENSMUSG00000039628	Hs3st6	3-OST-6	heparan sulfate (glucosamine) 3-O-sulfotransferase 6	protein-coding	0.0	0.0	1.5	6.5	0.0	0.5
Merged-chr10-19006293-1	chr10	19005793	19006793	+	567.0	f0_balb.idr	intron (NM_001166402, intron 4 of 7)	MIRb|SINE|MIR	5670.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-65128026-2	chr13	65127532	65128532	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-15050.0	NM_133680	66631.0	Mm.239196	NM_133680	ENSMUSG00000038212	Mfsd14b	5730414C17Rik|AU045608|AW539692|Hiatl1	major facilitator superfamily domain containing 14B	protein-coding	0.5	9.5	3.0	0.5	0.0	0.0
Merged-chr3-121630177-2	chr3	121629677	121630677	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13308.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30922751-2	chr5	30922251	30923251	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310524, intron 1 of 8)	intron (NM_001310524, intron 1 of 8)	1192.0	NM_001310524	16548.0	Mm.22451	NM_008439	ENSMUSG00000029162	Khk	-	ketohexokinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-66860549-2	chr10	66860049	66861049	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	59835.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150826171-2	chr2	150825671	150826671	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153781, intron 15 of 19)	intron (NM_153781, intron 15 of 19)	16399.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103901689-1	chr2	103901189	103902189	+	567.0	f0_balb.idr	intron (NR_131913, intron 1 of 6)	intron (NR_131913, intron 1 of 6)	738.0	NR_131913	100996933.0	Mm.394449	NR_131913		Lincred1	-	long intergenic non-protein coding RNA of erythroid differentiation 1	ncRNA	9.5	5.5	15.0	0.0	7.5	16.5
Merged-chr1-94056194-1	chr1	94055694	94056694	+	567.0	f0_balb.idr	Intergenic	Intergenic	-3641.0	NM_008798	18566.0	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding	0.0	0.0	3.5	0.0	0.0	3.5
Merged-chr11-76993472-2	chr11	76992972	76993972	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5125.0	NM_010484	15567.0	Mm.300318	NM_010484	ENSMUSG00000020838	Slc6a4	5-HTT|AI323329|Htt|Sert	solute carrier family 6 (neurotransmitter transporter, serotonin), member 4	protein-coding	2.5	6.0	0.0	1.5	3.5	3.0
Merged-chr6-127265280-2	chr6	127264780	127265780	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42687.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-11659704-1	chr18	11659204	11660204	+	567.0	f1_c57bl6.idr	intron (NM_001081223, intron 1 of 18)	ID_B1|SINE|B4	2355.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103484322-1	chr2	103483822	103484822	+	567.0	f1_c57bl6.idr	intron (NM_009804, intron 1 of 12)	intron (NM_009804, intron 1 of 12)	831.0	NM_009804	12359.0	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	22.5	34.0	19.5	14.0	35.0	26.0
Merged-chr2-154209292-2	chr2	154208792	154209792	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001012392, intron 6 of 15)	MER20|DNA|hAT-Charlie	8912.0	NM_153418	228801.0	Mm.3783	NM_153418	ENSMUSG00000027485	Bpifb1	Lplunc1	BPI fold containing family B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr9-60687587-1	chr9	60687087	60688087	+	567.0	f0_balb.idr	promoter-TSS (NM_001146047)	promoter-TSS (NM_001146047)	-53.0	NM_001146047	102747.0	Mm.269413	NM_145616	ENSMUSG00000047766	Lrrc49	AI430817|AW050057|D430025H09Rik|PGs4|p79	leucine rich repeat containing 49	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147826924-2	chr5	147826424	147827424	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-33704.0	NM_025624	66537.0	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-178854202-2	chr2	178853702	178854702	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	423687.0	NM_198656	381409.0	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	2.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135962950-1	chr4	135962450	135963450	+	567.0	f1_c57bl6.idr	promoter-TSS (NM_001356493)	promoter-TSS (NM_001356493)	-775.0	NM_001356493	74246.0	Mm.247946	NM_178389	ENSMUSG00000028671	Gale	2310002A12Rik|AI323962	galactose-4-epimerase, UDP	protein-coding	0.5	31.5	14.0	10.0	22.0	24.5
Merged-chr7-19878144-2	chr7	19877644	19878644	+	567.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177036, exon 7 of 7)	exon (NM_177036, exon 7 of 7)	9821.0	NM_177036	319930.0	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32992298-1	chr2	32991798	32992798	+	567.0	f0_balb.idr	intron (NM_001355201, intron 26 of 29)	intron (NM_001355201, intron 26 of 29)	-10215.0	NR_151460	56017.0	Mm.305754	NM_019488	ENSMUSG00000026791	Slc2a8	D2Ertd44e|GLUT8|GlutX1	solute carrier family 2, (facilitated glucose transporter), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-44227862-1	chr16	44227362	44228362	+	567.0	f1_balb.idr	TTS (NM_001029889)	TTS (NM_001029889)	54465.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-156252805-1	chr4	156252305	156253305	+	567.0	f0_c57.idr	intron (NM_001355709, intron 2 of 10)	intron (NM_001355709, intron 2 of 10)	2537.0	NM_001355709	231004.0	Mm.406833	NM_173736	ENSMUSG00000096351	Samd11	BC026991|mr-s	sterile alpha motif domain containing 11	protein-coding	4.5	7.0	5.5	5.0	8.5	5.5
Merged-chr17-44054362-1	chr17	44053862	44054862	+	567.0	f1_balb.idr	Intergenic	Lx7|LINE|L1	-24440.0	NM_001168620	83965.0	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	11.5	4.5	0.0	0.0	4.0	2.5
Merged-chr8-83655361-1	chr8	83654861	83655861	+	567.0	f0_balb.idr	intron (NM_018771, intron 1 of 6)	B4|SINE|B4	2683.0	NM_018771	67903.0	Mm.20945	NM_018771	ENSMUSG00000019433	Gipc1	GIPC|Glut1CIP|Rgs19ip1|Semcap1|TIP-2|TaxIP2	GIPC PDZ domain containing family, member 1	protein-coding	16.0	22.0	31.0	5.5	4.5	15.5
Merged-chr9-62380208-2	chr9	62379708	62380708	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38865.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11089252-1	chr4	11088752	11089752	+	567.0	f0_balb.idr	Intergenic	MamSINE1|SINE|tRNA	-13047.0	NM_001085493	76947.0	Mm.275265	NM_001085493	ENSMUSG00000050323	Ndufaf6	2310030N02Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 6	protein-coding	0.0	1.0	0.0	0.0	0.5	1.0
Merged-chr1-24134955-2	chr1	24134455	24135455	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-34614.0	NM_026604	68187.0	Mm.87130	NM_026604	ENSMUSG00000026153	Fam135a	4921533L14Rik|AI256732|AI835491	family with sequence similarity 135, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr10-81542964-2	chr10	81542464	81543464	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010301, intron 1 of 6)	intron (NM_010301, intron 1 of 6)	2082.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156110896-2	chr2	156110396	156111396	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029397, intron 1 of 2)	intron (NM_029397, intron 1 of 2)	1069.0	NM_170598	75710.0	Mm.27660	NM_029397	ENSMUSG00000089824	Rbm12	5730420G12Rik|9430070C08Rik|AI852903|SWAN|mKIAA0765	RNA binding motif protein 12	protein-coding	14.0	7.0	18.5	6.0	18.0	5.0
Merged-chr14-46873935-1	chr14	46873435	46874435	+	567.0	f0_balb.idr	Intergenic	LTR50|LTR|ERVL	-9030.0	NM_028966	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	20.0	17.0	30.0	3.5	5.0	15.0
Merged-chr2-73311939-2	chr2	73311439	73312439	+	567.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029022)	promoter-TSS (NM_029022)	653.0	NM_025854	66935.0	Mm.292140	NM_025854	ENSMUSG00000041777	Cir1	1700023B02Rik|2810021A19Rik|Cicr|Cir	corepressor interacting with RBPJ, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166357964-2	chr2	166357464	166358464	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84056.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45119702-2	chr7	45119202	45120202	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-2055.0	NR_029560	387168.0		NR_029560	ENSMUSG00000065495	Mir150	Mirn150|mir-150|mmu-mir-150	microRNA 150	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46002209-2	chr8	46001709	46002709	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2359.0	NM_001039562	654824.0	Mm.334517	NM_001039562	ENSMUSG00000050914	Ankrd37	-	ankyrin repeat domain 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-48694338-2	chr2	48693838	48694838	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119771.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46739685-1	chr18	46739185	46740185	+	567.0	f1_c57bl6.idr	intron (NM_026217, intron 1 of 3)	B2_Mm2|SINE|B2	1894.0	NM_026217	67526.0	Mm.9852	NM_026217	ENSMUSG00000032905	Atg12	4931423H11Rik|A330058M13Rik|Apg12l|Atg12l	autophagy related 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47642455-1	chr9	47641955	47642955	+	567.0	f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	Lx8|LINE|L1	112103.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	47.0	138.5	102.5	42.5	132.5	93.0
Merged-chr17-67338196-2	chr17	67337696	67338696	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	B4|SINE|B4	16263.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-115890803-1	chr4	115890303	115891303	+	567.0	f0_balb.idr	5' UTR (NM_001357060, exon 1 of 2)	5' UTR (NM_001357060, exon 1 of 2)	137.0	NM_001357060	76237.0	Mm.101606	NM_001357060	ENSMUSG00000034185	6430628N08Rik	-	RIKEN cDNA 6430628N08 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3668504-2	chr8	3668004	3669004	+	567.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026985, exon 7 of 7)	3' UTR (NM_026985, exon 7 of 7)	2742.0	NM_026985	69189.0	Mm.175176	NM_026985	ENSMUSG00000013974	Mcemp1	1810033B17Rik	mast cell expressed membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134560836-1	chr4	134560336	134561336	+	567.0	f1_c57bl6.idr	TTS (NM_207237)	TTS (NM_207237)	7015.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	0.5	2.5	1.5	0.0	0.0	1.5
Merged-chr9-66884825-2	chr9	66884325	66885325	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	RSINE1|SINE|B4	34880.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95890619-1	chr3	95890119	95891119	+	567.0	f1_balb.idr	intron (NM_153513, intron 1 of 5)	MIR3|SINE|MIR	1386.0	NM_153513	229600.0	Mm.89556	NM_153513	ENSMUSG00000038543	BC028528	L259	cDNA sequence BC028528	protein-coding	23.5	43.5	32.0	16.0	32.0	22.5
Merged-chr2-153052737-2	chr2	153052237	153053237	+	567.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001011732, exon 2 of 3)	exon (NM_001011732, exon 2 of 3)	-13218.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119507648-1	chr11	119507148	119508148	+	567.0	f1_balb.idr	3' UTR (NM_177394, exon 8 of 8)	3' UTR (NM_177394, exon 8 of 8)	16028.0	NM_177394	338371.0	Mm.271946	NM_177394	ENSMUSG00000039850	Endov	A730011L01Rik	endonuclease V	protein-coding	1.0	6.0	3.5	0.0	0.0	1.0
Merged-chr17-57456798-2	chr17	57456298	57457298	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 17 of 22)	Lx3A|LINE|L1	88516.0	NM_001104591	224916.0	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-136611048-1	chr6	136610548	136611548	+	567.0	f1_balb.idr	Intergenic	Intergenic	50845.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	8.5	3.5	13.0	2.0	10.0	4.0
Merged-chr19-11954514-1	chr19	11954014	11955014	+	567.0	f0_balb.idr	Intergenic	Intergenic	-11330.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	0.0	6.0	2.0	5.0	13.5	1.5
Merged-chr7-73366927-1	chr7	73366427	73367427	+	567.0	f1_c57bl6.idr	intron (NR_040324, intron 1 of 2)	intron (NR_040324, intron 1 of 2)	-8593.0	NM_177740	244058.0	Mm.333943	NM_177740	ENSMUSG00000070509	Rgma	BC059072|C230063O06	repulsive guidance molecule family member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23762308-1	chr17	23761808	23762808	+	567.0	f1_c57bl6.idr	exon (NM_153791, exon 3 of 7)	exon (NM_153791, exon 3 of 7)	9283.0	NM_153791	224613.0	Mm.328835	NM_153791	ENSMUSG00000040097	Flywch1	E030034P13Rik|mKIAA1552	FLYWCH-type zinc finger 1	protein-coding	0.0	0.0	3.5	1.5	0.0	0.0
Merged-chr3-84945104-1	chr3	84944604	84945604	+	567.0	f0_balb.idr	intron (NM_001177774, intron 3 of 12)	intron (NM_001177774, intron 3 of 12)	-7107.0	NM_080428	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45415668-2	chr7	45415168	45416168	+	567.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_198190, exon 3 of 3)	exon (NM_198190, exon 3 of 3)	1973.0	NM_198190	78405.0	Mm.20344	NM_198190	ENSMUSG00000074121	Ntf5	2900040K06Rik|AI462899|NT-4|NT-5|NT4|NT4/5|Ntf-5|Ntf4	neurotrophin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-136362800-1	chr3	136362300	136363300	+	567.0	f0_balb.idr	Intergenic	MIR|SINE|MIR	-36734.0	NM_001033350	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	4.0	4.5	3.0	1.0	0.5	5.5
Merged-chr14-69802651-1	chr14	69802151	69803151	+	567.0	f0_balb.idr	intron (NM_153514, intron 1 of 9)	intron (NM_153514, intron 1 of 9)	2894.0	NM_153514	246710.0	Mm.102367	NM_153514	ENSMUSG00000022075	Rhobtb2	Dbc2|E130206H14Rik|mKIAA0717	Rho-related BTB domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46404384-2	chr8	46403884	46404884	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66653.0	NM_007981	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87411305-2	chr3	87410788	87411788	+	567.0	f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-24494.0	NM_001113238	329693.0	Mm.331122	NM_183222	ENSMUSG00000048031	Fcrl5	Fcrh3|mBXMH2	Fc receptor-like 5	protein-coding	0.0	0.5	0.5	3.5	7.5	0.0
Merged-chr2-59210597-2	chr2	59210097	59211097	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	49747.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-142792487-2	chr6	142791987	142792987	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145390, intron 3 of 5)	intron (NM_001145390, intron 3 of 5)	11979.0	NM_001145390	330440.0	Mm.484618	NM_001033417	ENSMUSG00000048473	Sult6b2	Gm766	sulfotransferase family 6B, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-57765185-1	chr3	57764685	57765685	+	567.0	f0_balb.idr	intron (NR_130743, intron 2 of 9)	C-rich|Low_complexity|Low_complexity	29128.0	NR_130743	24017.0	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152848639-2	chr2	152848139	152849139	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028109, intron 1 of 17)	intron (NM_028109, intron 1 of 17)	675.0	NM_028109	72119.0	Mm.407737	NM_028109	ENSMUSG00000027469	Tpx2	2610005B21Rik|DIL2|REPP86|p100	TPX2, microtubule-associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131076228-1	chr1	131075728	131076728	+	567.0	f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	21615.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0.0	1.5	4.5	0.5	3.0	0.0
Merged-chr13-113639063-2	chr13	113638563	113639563	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20499.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66276133-1	chr14	66275633	66276633	+	567.0	f1_balb.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	4919.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	17.0	8.5	5.0	0.0	7.0	2.5
Merged-chr14-124549325-2	chr14	124548825	124549825	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207667, intron 1 of 4)	Lx3B|LINE|L1	127802.0	NM_207667	14169.0	Mm.206362	NM_010201	ENSMUSG00000025551	Fgf14	FHF-4|Fhf4|Tg(tetO-MAPT*P301L)4510Kha|mFHF-4(1B)	fibroblast growth factor 14	protein-coding	0.0	0.0	0.0	0.0	1.5	0.0
Merged-chr3-69709874-1	chr3	69709374	69710374	+	567.0	f0_balb.idr	Intergenic	Intergenic	-12181.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34009341-1	chr17	34008841	34009841	+	567.0	f1_c57bl6.idr	Intergenic	Intergenic	-8994.0	NM_001347346	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	2.0	8.5	12.5	0.0	0.0	1.0
Merged-chr19-55268707-2	chr19	55268207	55269207	+	567.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027976, exon 2 of 22)	exon (NM_027976, exon 2 of 22)	15338.0	NM_027976	433256.0	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-30336396-2	chr6	30335896	30336896	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-31857.0	NM_001169576	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-109597948-2	chr10	109597448	109598448	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	402271.0	NM_001081035	260315.0	Mm.225050	NM_177797	ENSMUSG00000020181	Nav3	4732483H20Rik|9630020C08Rik|POMFIL1|Pomfil1p|mKIAA0938|unc53H3	neuron navigator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101831106-2	chr5	101830606	101831606	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65976.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83108754-1	chr8	83108254	83109254	+	567.0	f0_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	-56598.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	19.0	5.5	14.0	14.0	7.0	9.0
Merged-chr4-98366590-2	chr4	98366090	98367090	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053157, intron 4 of 6)	B1_Mus1|SINE|Alu	16675.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-20021380-1	chr17	20020880	20021880	+	567.0	f1_balb.idr	Intergenic	L1Md_F2|LINE|L1	26825.0	NM_001104566	22313.0	Mm.379039	NM_001104566	ENSMUSG00000090315	Vmn2r104	V2r7	vomeronasal 2, receptor 104	protein-coding	1.0	0.0	0.0	1.5	4.0	0.0
Merged-chr10-80136394-2	chr10	80135894	80136894	+	567.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001195268, exon 4 of 9)	exon (NM_001195268, exon 4 of 9)	993.0	NM_001195268	100503659.0	Mm.485395	NM_015761	ENSMUSG00000035640	Cbarp	9630008F14|Dos|R29144/1	calcium channel, voltage-dependent, beta subunit associated regulatory protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-16934746-2	chr9	16934246	16935246	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-556515.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84972474-1	chr8	84971974	84972974	+	567.0	f1_c57bl6.idr	intron (NM_001317385, intron 5 of 5)	intron (NM_001317385, intron 5 of 5)	2852.0	NM_011563	21672.0	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	2.5	8.0	6.0	4.5	8.5	2.0
Merged-chr1-84873144-2	chr1	84872644	84873644	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025386, intron 1 of 3)	intron (NM_025386, intron 1 of 3)	33303.0	NM_025386	66153.0	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-54767338-1	chr4	54766838	54767838	+	567.0	f0_balb.idr	Intergenic	Intergenic	-180607.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	0.0	7.5	2.0	0.0	2.0	2.5
Merged-chr11-79956186-2	chr11	79955686	79956686	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144826, intron 6 of 18)	intron (NM_144826, intron 6 of 18)	6201.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80192554-1	chr18	80192054	80193054	+	567.0	f1_balb.idr	non-coding (NR_131039, exon 5 of 5)	non-coding (NR_131039, exon 5 of 5)	6315.0	NR_131039	105246506.0	Mm.392326	NR_131039		LOC105246506	-	uncharacterized LOC105246506	ncRNA	13.0	1.5	4.0	4.0	0.5	3.5
Merged-chr5-88591818-2	chr5	88591318	88592318	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 2 of 13)	Lx5b|LINE|L1	8305.0	NM_001359209	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29203725-2	chr17	29203225	29204225	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360239, intron 7 of 21)	intron (NM_001360239, intron 7 of 21)	34065.0	NM_153166	240058.0	Mm.39905	NM_153166	ENSMUSG00000024008	Cpne5	A830083G22Rik	copine V	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-30465185-2	chr15	30464685	30465685	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 2 of 21)	L3|LINE|CR1	292592.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10020152-1	chr19	10019652	10020652	+	567.0	f0_balb.idr	intron (NR_153790, intron 1 of 10)	ID_B1|SINE|B4	1958.0	NM_001347430	74760.0	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	20.0	23.5	21.5	24.5	18.0	16.0
Merged-chr16-73985118-1	chr16	73984618	73985618	+	567.0	f0_balb.idr	intron (NM_001358493, intron 8 of 28)	intron (NM_001358493, intron 8 of 28)	356949.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	2.5	4.0	9.0	12.5	3.0	25.0
Merged-chr11-113133558-1	chr11	113133058	113134058	+	567.0	f0_c57.idr	intron (NR_015556, intron 1 of 2)	intron (NR_015556, intron 1 of 2)	68280.0	NR_015556	72386.0	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-32090436-2	chr14	32089936	32090936	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145460, intron 1 of 7)	ORR1B1|LTR|ERVL-MaLR	4708.0	NM_145460	218885.0	Mm.202257	NM_145460	ENSMUSG00000021906	Oxnad1	2410002F01Rik|AW492292|BC019806	oxidoreductase NAD-binding domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65716226-2	chr17	65715726	65716726	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 3 of 6)	Lx9|LINE|L1	56526.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-71419073-1	chr6	71418573	71419573	+	567.0	f0_balb.idr	intron (NM_001355745, intron 2 of 9)	intron (NM_001355745, intron 2 of 9)	21564.0	NM_001355745	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35073121-2	chr16	35072621	35073621	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023587, intron 3 of 6)	L1MB7|LINE|L1	50700.0	NM_023587	70757.0	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-146385813-1	chr2	146385313	146386313	+	567.0	f0_balb.idr	intron (NM_001033348, intron 24 of 40)	intron (NM_001033348, intron 24 of 40)	126191.0	NM_001033348	241694.0	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding	7.5	1.0	0.0	9.0	4.5	11.5
Merged-chr7-125655449-1	chr7	125654949	125655949	+	567.0	f1_balb.idr	intron (NM_207239, intron 26 of 36)	intron (NM_207239, intron 26 of 36)	52020.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	0.0	2.5	4.0	0.0	0.0	3.5
Merged-chr14-94598890-1	chr14	94598390	94599390	+	567.0	f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-708211.0	NM_001346722	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	3.0	0.0	1.0	6.5	0.0	0.0
Merged-chr1-92949541-2	chr1	92949041	92950041	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_015525, intron 1 of 1)	intron (NR_015525, intron 1 of 1)	1049.0	NR_015525	100037260.0	Mm.442236	NR_015525	ENSMUSG00000100632	9430060I03Rik	-	RIKEN cDNA 9430060I03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-33934157-2	chr13	33933657	33934657	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243192, intron 2 of 7)	intron (NM_001243192, intron 2 of 7)	-1875.0	NR_040707	68808.0	Mm.443347	NR_040707	ENSMUSG00000085457	1110046J04Rik	-	RIKEN cDNA 1110046J04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-29445625-1	chr10	29445125	29446125	+	567.0	f0_balb.idr	Intergenic	Intergenic	-83183.0	NM_001110197	68031.0	Mm.28930	NM_026518	ENSMUSG00000038876	Rnf146	2610509H23Rik|Iduna	ring finger protein 146	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30713811-2	chr13	30713311	30714311	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-35422.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34399908-2	chr6	34399408	34400408	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12454.0	NM_009731	11997.0	Mm.482073	NM_009731	ENSMUSG00000052131	Akr1b7	AR|Avdp|MVDP	aldo-keto reductase family 1, member B7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64366537-1	chr13	64366037	64367037	+	567.0	f1_c57bl6.idr	exon (NM_009984, exon 6 of 8)	exon (NM_009984, exon 6 of 8)	3983.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	12.5	4.0	1.0	7.5	2.0	2.5
Merged-chr19-6940343-2	chr19	6939843	6940843	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177361, intron 2 of 6)	intron (NM_001177361, intron 2 of 6)	850.0	NM_207220	107173.0	Mm.276555	NM_207220	ENSMUSG00000024958	Gpr137	AI428855	G protein-coupled receptor 137	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-62956209-2	chr14	62955709	62956709	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 11 of 11)	intron (NM_175546, intron 11 of 11)	28301.0	NM_001037751	432867.0	Mm.99387	NM_001037751	ENSMUSG00000075574	Defb48	Defb42|EG432867	defensin beta 48	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65609598-2	chr17	65609098	65610098	+	566.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355402, intron 1 of 6)	Lx8|LINE|L1	3957.0	NM_001355402	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134315398-2	chr1	134314898	134315898	+	566.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001144855, intron 17 of 28)	intron (NM_001144855, intron 17 of 28)	17530.0	NM_001144855	68507.0	Mm.295105	NM_001144855	ENSMUSG00000026458	Ppfia4	100042382|1110008G13Rik|AI448359|AI852265|C81506|Gm3812	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142610811-2	chr7	142610311	142611311	+	566.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32665.0	NR_130973	14955.0	Mm.14802	NR_001592	ENSMUSG00000000031	H19	AI747191|EyeLinc6	H19, imprinted maternally expressed transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85670464-2	chr11	85669964	85670964	+	566.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	49280.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-37533620-3	chr16	37533126	37534126	+	566.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355727, intron 2 of 4)	intron (NM_001355727, intron 2 of 4)	6163.0	NM_028812	74197.0	Mm.287795	NM_028812	ENSMUSG00000022828	Gtf2e1	2610024P03Rik|56kDa|AI303800|FE|TFIIE-A	general transcription factor II E, polypeptide 1 (alpha subunit)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-53499645-3	chr10	53499127	53500127	+	566.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037973, exon 4 of 4)	non-coding (NR_037973, exon 4 of 4)	19362.0	NR_037973	100502868.0	Mm.297722	NR_037973	ENSMUSG00000112739	Gm20597	B230314j19	predicted gene, 20597	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101650780-2	chr7	101650228	101651228	+	566.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-13040.0	NM_009191	20480.0	Mm.3990	NM_009191	ENSMUSG00000001829	Clpb	AL118244|Skd3	ClpB caseinolytic peptidase B	protein-coding	0.0	1.0	1.0	4.5	6.0	8.0
Merged-chr2-68241811-2	chr2	68241311	68242311	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 16 of 17)	intron (NM_016866, intron 16 of 17)	137139.0	NM_020283	26877.0	Mm.226435	NM_020283	ENSMUSG00000034780	B3galt1	beta3Gal-T1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136172363-2	chr1	136171863	136172863	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 33 of 34)	intron (NM_001039472, intron 33 of 34)	40465.0	NM_001329610	76422.0	Mm.159735	NM_001329610		Mroh3	2310006M14Rik	maestro heat-like repeat family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133371682-2	chr4	133371182	133372182	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016981, intron 1 of 11)	intron (NM_016981, intron 1 of 11)	1906.0	NR_039582	100628620.0		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	2.5	8.5	3.5	5.5	9.5	10.0
Merged-chr10-79953080-2	chr10	79952580	79953580	+	566.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007880, exon 9 of 9)	3' UTR (NM_007880, exon 9 of 9)	-7072.0	NM_175450	216156.0	Mm.35828	NM_175450	ENSMUSG00000035754	Wdr18	2310012I10Rik|AU044733|AW122032	WD repeat domain 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34440023-2	chr17	34439523	34440523	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163855, intron 9 of 23)	intron (NM_001163855, intron 9 of 23)	35914.0	NM_030746	632126.0	Mm.484958	NM_030746	ENSMUSG00000058435	Btnl4	Btn3a3|EG632126|NG11	butyrophilin-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89285424-2	chr6	89284924	89285924	+	566.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131021, exon 1 of 4)	non-coding (NR_131021, exon 1 of 4)	301.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-104777611-2	chr3	104777127	104778127	+	566.5	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183224)	promoter-TSS (NM_183224)	-80.0	NM_183224	329731.0	Mm.389494	NM_183224	ENSMUSG00000055865	Fam19a3	7530404M11Rik|Sam3|TAFA3|Tafa-3	family with sequence similarity 19, member A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-58221283-2	chr17	58220783	58221783	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081653, intron 13 of 23)	Lx7|LINE|L1	451713.0	NM_001081653	620292.0	Mm.391030	NM_001081653	ENSMUSG00000038048	Cntnap5c	Caspr5-3|EG620292|Gm325	contactin associated protein-like 5C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3702357-2	chr19	3701857	3702857	+	566.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	-5936.0	NM_001358256	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81009708-2	chr15	81009208	81010208	+	566.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_134091, exon 13 of 22)	exon (NM_134091, exon 13 of 22)	31943.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146811909-2	chr5	146811409	146812409	+	566.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16953.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	7.5	25.0	7.5	0.0	0.5	3.0
Merged-chr2-93413875-2	chr2	93413339	93414339	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040529, intron 3 of 5)	intron (NR_040529, intron 3 of 5)	8168.0	NR_105967	102465605.0		NR_105967	ENSMUSG00000099238	Mir7001	Gm27886|mmu-mir-7001	microRNA 7001	ncRNA	2.0	4.5	2.0	2.0	0.0	0.0
Merged-chr2-150854972-2	chr2	150854472	150855472	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 2 of 12)	intron (NR_151505, intron 2 of 12)	-12402.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-106947792-2	chr13	106947292	106948292	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025447, intron 2 of 11)	B1F|SINE|Alu	663.0	NM_025447	66254.0	Mm.9563	NM_025447	ENSMUSG00000021692	Dimt1	1500031M22Rik|AV111347|Dimt1l	DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41307315-2	chr19	41306815	41307815	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 9 of 16)	MER58A|DNA|hAT-Charlie	-43311.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.0	0.0	2.5	1.5	0.0	0.5
Merged-chr6-134752883-2	chr6	134752383	134753383	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_130447, intron 3 of 6)	intron (NM_130447, intron 3 of 6)	-39477.0	NR_151454	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	3.5	2.5	3.0	2.0	6.5	4.5
Merged-chr9-77144325-2	chr9	77143825	77144825	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027150, intron 7 of 7)	B4A|SINE|B4	-98544.0	NR_136923	26944.0	Mm.23199	NM_012033	ENSMUSG00000032357	Tinag	AI452335|TIN-ag	tubulointerstitial nephritis antigen	protein-coding	0.0	0.0	0.5	6.0	0.0	1.5
Merged-chr2-32379600-2	chr2	32379100	32380100	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198001, intron 1 of 1)	intron (NM_198001, intron 1 of 1)	2315.0	NM_198001	73737.0	Mm.27608	NM_198001	ENSMUSG00000039195	1110008P14Rik	C79326	RIKEN cDNA 1110008P14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131964562-2	chr1	131964062	131965062	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177628, intron 1 of 4)	intron (NM_001177628, intron 1 of 4)	1647.0	NM_001177628	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-58599276-1	chr18	58598776	58599776	+	566.5	f0_balb.idr	intron (NM_001081072, intron 5 of 9)	intron (NM_001081072, intron 5 of 9)	43036.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35022391-1	chr7	35021891	35022891	+	566.5	f1_c57bl6.idr	intron (NM_008820, intron 11 of 14)	intron (NM_008820, intron 11 of 14)	34175.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	6.0	2.0	3.0	5.0	2.0	1.5
Merged-chr12-79139291-2	chr12	79138791	79139791	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009705, intron 2 of 7)	intron (NM_009705, intron 2 of 7)	8503.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	11.0	18.5	14.5	8.0	8.5	12.5
Merged-chr3-130382511-2	chr3	130382011	130383011	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198711, intron 2 of 34)	Lx8|LINE|L1	201666.0	NM_001244952	77018.0	Mm.91728	NM_029838	ENSMUSG00000058897	Col25a1	2700062B08Rik|CLAC-P	collagen, type XXV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96630518-2	chr3	96630018	96631018	+	566.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003619)	promoter-TSS (NR_003619)	590.0	NM_001102407	60365.0	Mm.261972	NM_025875	ENSMUSG00000038374	Rbm8a	2310057C03Rik|AA673428|Rbm8	RNA binding motif protein 8a	protein-coding	3.5	13.0	2.5	3.5	13.0	2.5
Merged-chr3-146649384-2	chr3	146648884	146649884	+	566.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045949, exon 4 of 4)	non-coding (NR_045949, exon 4 of 4)	1933.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	0.0	0.0	1.0	9.0	0.0	0.0
Merged-chr7-45468782-2	chr7	45468282	45469282	+	566.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-1884.0	NM_007527	12028.0	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53754740-2	chr11	53754240	53755240	+	566.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	8914.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89101020-2	chr3	89100520	89101520	+	566.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001253751, exon 2 of 11)	exon (NM_001253751, exon 2 of 11)	947.0	NM_134469	110196.0	Mm.39472	NM_134469	ENSMUSG00000059743	Fdps	6030492I17Rik|AI256750|Fdpsl1|mKIAA1293	farnesyl diphosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98389560-2	chr11	98389060	98390060	+	566.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033537, exon 8 of 8)	3' UTR (NM_001033537, exon 8 of 8)	2958.0	NM_008890	18948.0	Mm.57030	NM_008890	ENSMUSG00000038216	Pnmt	Pent	phenylethanolamine-N-methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30641192-2	chr16	30640692	30641692	+	566.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41469.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	1.0	8.5	1.5	6.0	9.0	4.0
Merged-chr15-25716851-2	chr15	25716351	25717351	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 4 of 40)	B1_Mur1|SINE|Alu	-36355.0	NM_001353142	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119470919-2	chr11	119470419	119471419	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153849, intron 2 of 3)	intron (NR_153849, intron 2 of 3)	20316.0	NR_153849	78439.0	Mm.440446	NR_153849	ENSMUSG00000109408	A930037H05Rik	Gm44935	RIKEN cDNA A930037H05 gene	ncRNA	0.0	0.0	2.5	0.0	2.0	1.0
Merged-chr2-174043755-2	chr2	174043255	174044255	+	566.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-33296.0	NM_172675	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-156415198-2	chr3	156414698	156415698	+	566.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146489.0	NR_040398	329782.0	Mm.183459	NR_040398	ENSMUSG00000085084	4930570G19Rik	C630015G22	RIKEN cDNA 4930570G19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70296772-2	chr8	70296272	70297272	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024922, intron 6 of 12)	PB1D9|SINE|Alu	5680.0	NM_001024922	234374.0	Mm.388127	NM_001024922	ENSMUSG00000057788	Ddx49	R27090_2	DEAD (Asp-Glu-Ala-Asp) box polypeptide 49	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108605887-2	chr6	108605387	108606387	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_104577, intron 3 of 6)	intron (NR_104577, intron 3 of 6)	17280.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	6.5	26.5	4.0	10.0	7.5	8.5
Merged-chr3-89316406-2	chr3	89315906	89316906	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010108, intron 2 of 4)	intron (NM_010108, intron 2 of 4)	6473.0	NM_010108	13638.0	Mm.331159	NM_010108	ENSMUSG00000028039	Efna3	AW494418|EFL-2|Ehk1-L|Epl3|LERK-3	ephrin A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-143423578-2	chr6	143423078	143424078	+	566.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111930.0	NR_155418	75904.0	Mm.414916	NR_155418	ENSMUSG00000084971	4930579D09Rik	-	RIKEN cDNA 4930579D09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72308452-2	chr8	72307952	72308952	+	566.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10610.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	2.0	4.5	0.0	0.0	12.5	0.0
Merged-chr15-95764339-2	chr15	95763839	95764839	+	566.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12748.0	NR_131148	629300.0	Mm.247258	NR_131148	ENSMUSG00000115699	Gm6961	EG629300	predicted gene 6961	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191623243-2	chr1	191622743	191623743	+	566.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001306203, exon 19 of 19)	3' UTR (NM_001306203, exon 19 of 19)	47607.0	NM_001306204	77065.0	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4554471-2	chr2	4553971	4554971	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 11 of 23)	B2_Mm1a|SINE|B2	-5283.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103523583-2	chr15	103523083	103524083	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357980, intron 5 of 14)	L2c|LINE|L2	8606.0	NM_001285890	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36797513-2	chr5	36797066	36798066	+	566.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026242)	promoter-TSS (NM_026242)	-812.0	NM_026242	67568.0	Mm.332336	NM_026242	ENSMUSG00000055302	Mrfap1	9130413I22Rik|AL022827|Pam14	Morf4 family associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135077240-2	chr5	135076740	135077740	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199677, intron 1 of 3)	intron (NM_001199677, intron 1 of 3)	1026.0	NM_177574	194309.0	Mm.44356	NM_177574	ENSMUSG00000043614	Vps37d	Wbscr24	vacuolar protein sorting 37D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-46099191-2	chr15	46098691	46099691	+	566.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-225394.0	NR_045509	71120.0	Mm.158571	NR_045509	ENSMUSG00000099751	1700022A22Rik	4933413D07Rik	RIKEN cDNA 1700022A22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-20012225-2	chr3	20011725	20012725	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 11 of 16)	intron (NM_080634, intron 11 of 16)	23085.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127023714-2	chr7	127023214	127024214	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010772, intron 4 of 4)	intron (NM_010772, intron 4 of 4)	-2503.0	NM_001102563	69017.0	Mm.392047	NM_001102563	ENSMUSG00000045114	Prrt2	1500031I19Rik|AI195361|DSPB3	proline-rich transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-101870589-2	chr14	101870089	101871089	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347628, intron 1 of 26)	(TG)n|Simple_repeat|Simple_repeat	29966.0	NM_001347628	380928.0	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-55356373-2	chr3	55355873	55356873	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357475, intron 3 of 16)	intron (NM_001357475, intron 3 of 16)	-105355.0	NM_001195539	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58716800-2	chr1	58716300	58717300	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	3514.0	NM_001355056	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107113446-2	chr13	107112946	107113946	+	566.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	90876.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118984418-2	chr14	118983918	118984918	+	566.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081252)	TTS (NM_001081252)	46486.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	5.0	0.0	0.0	0.5	0.0	0.0
Merged-chr9-94926623-2	chr9	94926123	94927123	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 6 of 15)	intron (NM_177909, intron 6 of 15)	174794.0	NR_106116	102465763.0		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113666763-2	chr6	113666263	113667263	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172161, intron 3 of 12)	RMER4A|LTR|ERVK	28296.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-88143611-2	chr18	88143111	88144111	+	566.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	750596.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121827589-2	chr5	121827089	121828089	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001306126, intron 3 of 8)	ID_B1|SINE|B4	-8316.0	NR_105998	102465624.0		NR_105998	ENSMUSG00000099063	Mir7031	Gm27859|mmu-mir-7031	microRNA 7031	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-79051513-2	chr4	79051013	79052013	+	566.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	457466.0	NR_131142	623726.0		NR_131142		A430085M09Rik	EG623726	RIKEN cDNA A430085M09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61678723-2	chr10	61678223	61679223	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_126477, intron 1 of 1)	RLTR18B|LTR|ERVK	-1562.0	NM_001358488	20224.0	Mm.391794	NM_009120	ENSMUSG00000020088	Sar1a	1600019H17Rik|Sara|Sara1	secretion associated Ras related GTPase 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122477534-2	chr8	122477034	122478034	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152823, intron 4 of 14)	intron (NR_152823, intron 4 of 14)	1391.0	NR_152823	66965.0	Mm.482288	NM_153775	ENSMUSG00000049482	Ctu2	2310061F22Rik|C16orf84|Ncs2	cytosolic thiouridylase subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-67584482-2	chr3	67583982	67584982	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025813, intron 1 of 15)	intron (NM_025813, intron 1 of 15)	1714.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	0.0	8.5	7.0	0.5	8.5	5.5
Merged-chr15-81022623-2	chr15	81022128	81023128	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 5 of 13)	intron (NM_001082536, intron 5 of 13)	44863.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-54928224-2	chr1	54927724	54928724	+	566.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1837.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132816183-3	chr4	132815681	132816681	+	566.5	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-19817.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	18.5	98.5	38.0	23.0	69.5	41.5
Merged-chr3-84648343-3	chr3	84647832	84648832	+	566.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17860.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6344568-3	chr4	6344062	6345062	+	566.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger9a|DNA|TcMar-Tigger	-21118.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	2.5	3.5	2.0	1.0	12.5	1.5
Merged-chr8-22935076-3	chr8	22934581	22935581	+	566.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081149, intron 16 of 17)	C-rich|Low_complexity|Low_complexity	-39755.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.0	14.5	2.5	1.5	7.0	5.5
Merged-chr11-48927253-2	chr11	48926753	48927753	+	566.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045540)	promoter-TSS (NM_001045540)	-71.0	NM_001045540	620913.0	Mm.452174	NM_001045540	ENSMUSG00000048852	Gm12185	Irgb2b1	predicted gene 12185	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76323663-2	chr12	76323163	76324163	+	566.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1228.0	NM_001101471	238276.0	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13294451-3	chr16	13293973	13294973	+	566.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122667, intron 2 of 16)	intron (NM_001122667, intron 2 of 16)	29394.0	NM_181860	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	1.0	0.0	1.0	1.0	0.0	1.0
Merged-chr1-36078490-2	chr1	36077990	36078990	+	566.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	10090.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27402885-1	chr7	27402385	27403385	+	566.0	f0_balb.idr	exon (NM_032610, exon 17 of 36)	exon (NM_032610, exon 17 of 36)	-6332.0	NM_001199236	80297.0	Mm.459123	NM_032610	ENSMUSG00000011751	Sptbn4	1700022P15Rik|5830426A08Rik|ROSA62|SpbIV|Spnb4|dyn|lnd|nmf261|nmf379|qv	spectrin beta, non-erythrocytic 4	protein-coding	0.0	0.0	3.5	2.0	0.0	0.5
Merged-chr7-48881650-1	chr7	48881150	48882150	+	566.0	f0_balb.idr	promoter-TSS (NM_001360812)	promoter-TSS (NM_001360812)	-54.0	NM_001360812	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102293011-1	chr11	102292511	102293511	+	566.0	f1_c57bl6.idr	intron (NM_001098836, intron 8 of 12)	intron (NM_001098836, intron 8 of 12)	3618.0	NM_001098836	217218.0	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	1.5	0.0	0.0	0.0	0.0	0.5
Merged-chr2-162970242-2	chr2	162969742	162970742	+	566.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081338, exon 21 of 23)	exon (NM_001081338, exon 21 of 23)	-17239.0	NM_001291154	27219.0	Mm.26462	NM_013731	ENSMUSG00000017868	Sgk2	AI098171|AW146006|Sgkl	serum/glucocorticoid regulated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33554766-2	chr17	33554266	33555266	+	566.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053214)	promoter-TSS (NM_053214)	-941.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	4.0	11.0	16.0	13.5	17.0	6.5
Merged-chr3-17984628-2	chr3	17984128	17985128	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	36184.0	NM_029289	75439.0	Mm.27023	NM_029289	ENSMUSG00000027564	Cypt12	1700001F04Rik|AV209098	cysteine-rich perinuclear theca 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-4385658-1	chr10	4385158	4386158	+	566.0	f1_c57bl6.idr	intron (NM_001033466, intron 1 of 2)	B2_Mm1t|SINE|B2	1817.0	NM_001359811	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10945589-2	chr16	10945089	10946089	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30792.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13828829-2	chr9	13828329	13829329	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176836, intron 2 of 9)	intron (NM_176836, intron 2 of 9)	1113.0	NM_176836	72826.0	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50759577-1	chr16	50759077	50760077	+	566.0	f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-23832.0	NR_131006	78639.0	Mm.160109	NR_131005	ENSMUSG00000092276	1700116B05Rik	-	RIKEN cDNA 1700116B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33811165-2	chr16	33810665	33811665	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010739, intron 8 of 12)	intron (NM_010739, intron 8 of 12)	17128.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59203809-1	chr11	59203309	59204309	+	566.0	f1_c57bl6.idr	intron (NM_001302334, intron 1 of 3)	intron (NM_001302334, intron 1 of 3)	1323.0	NM_001302336	67212.0	Mm.282694	NM_026035	ENSMUSG00000036860	Mrpl55	2810038N09Rik|L55mt|MRP-L55	mitochondrial ribosomal protein L55	protein-coding	15.5	23.0	7.5	0.0	3.5	4.0
Merged-chr7-31078195-1	chr7	31077695	31078695	+	566.0	f1_balb.idr	Intergenic	Intergenic	-1498.0	NM_008557	17178.0	Mm.263847	NM_008557	ENSMUSG00000057092	Fxyd3	Mat8	FXYD domain-containing ion transport regulator 3	protein-coding	1.0	3.0	7.0	0.5	0.0	2.0
Merged-chr10-70004360-2	chr10	70003860	70004860	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_170729, intron 38 of 40)	B2_Mm2|SINE|B2	78828.0	NM_009670	11735.0	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3861316-1	chr19	3860816	3861816	+	566.0	f1_balb.idr	intron (NM_001271496, intron 1 of 11)	(TTTTG)n|Simple_repeat|Simple_repeat	9543.0	NR_073190	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	8.0	24.0	21.5	3.5	22.0	22.0
Merged-chr2-116907406-1	chr2	116906906	116907906	+	566.0	f0_balb.idr	intron (NR_040335, intron 2 of 3)	MTD|LTR|ERVL-MaLR	7254.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117114387-2	chr5	117113887	117114887	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122666, intron 1 of 12)	RMER6A|LTR|ERVK	1606.0	NM_001122666	71954.0	Mm.34456	NM_178622	ENSMUSG00000066900	Suds3	2400003N08Rik|2410008L21Rik|AU067672|mSds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76596363-2	chr15	76595863	76596863	+	566.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_073123)	TTS (NR_073123)	11228.0	NM_053193	94230.0	Mm.45141	NM_053193	ENSMUSG00000034022	Cpsf1	CPSF160	cleavage and polyadenylation specific factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87852474-2	chr1	87851974	87852974	+	566.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177646)	promoter-TSS (NM_177646)	-813.0	NM_177646	227333.0	Mm.277217	NM_177646	ENSMUSG00000070738	Dgkd	AI841987|D330025K09|DGKdelta|dgkd-2	diacylglycerol kinase, delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-123278535-2	chr7	123278035	123279035	+	566.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001122643)	TTS (NM_001122643)	63669.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119975388-1	chr9	119974888	119975888	+	566.0	f1_balb.idr	intron (NM_001357562, intron 2 of 4)	B1_Mur2|SINE|Alu	7635.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.0	0.0	0.0	0.0	5.5	0.5
Merged-chr3-31424883-1	chr3	31424383	31425383	+	566.0	f0_balb.idr	Intergenic	Intergenic	-114564.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-149342914-1	chr6	149342414	149343414	+	566.0	f0_c57.idr	Intergenic	RLTR45|LTR|ERVK	33500.0	NM_001289662	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	0.0	0.0	0.0	2.5	5.0	1.0
Merged-chr17-6475548-2	chr17	6475048	6476048	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24554.0	NR_033520	547127.0	Mm.297552	NM_001045538		Tmem181b-ps	Tmem181b	transmembrane protein 181B, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80026389-1	chr15	80025889	80026889	+	566.0	f0_balb.idr	Intergenic	Intergenic	-11581.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	15.0	25.0	8.5	16.5	35.0	12.0
Merged-chr7-82816389-1	chr7	82815889	82816889	+	566.0	f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-50944.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	9.0	6.5	8.5	1.0	3.0	4.0
Merged-chr8-79377044-2	chr8	79376544	79377544	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 1 of 6)	RSINE1|SINE|B4	22424.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167053278-2	chr2	167052778	167053778	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033196, intron 3 of 13)	intron (NM_001033196, intron 3 of 13)	-9656.0	NR_138563	68949.0	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6427182-1	chr15	6426682	6427682	+	566.0	f1_balb.idr	intron (NM_001008702, intron 9 of 13)	intron (NM_001008702, intron 9 of 13)	-18151.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152753890-2	chr1	152753390	152754390	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081197, intron 1 of 1)	intron (NM_001081197, intron 1 of 1)	3339.0	NM_001081197	71281.0	Mm.158650	NM_001081197	ENSMUSG00000055547	Apobec4	4933431M11Rik	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-142865615-1	chr2	142865115	142866115	+	566.0	f0_balb.idr	intron (NM_001355123, intron 1 of 26)	intron (NM_001355123, intron 1 of 26)	35849.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122775936-2	chr5	122775436	122776436	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199676, intron 1 of 16)	intron (NM_001199676, intron 1 of 16)	3474.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69890288-1	chr12	69889788	69890788	+	566.0	f0_balb.idr	intron (NM_201519, intron 1 of 30)	L2a|LINE|L2	-2817.0	NM_178628	73991.0	Mm.474462	NM_178628	ENSMUSG00000021066	Atl1	4930435M24Rik|Adfsp|Fsp1|Spg3|Spg3a	atlastin GTPase 1	protein-coding	4.0	0.5	0.5	13.0	3.0	2.5
Merged-chr12-110438931-2	chr12	110438431	110439431	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-8248.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10772448-1	chr17	10771948	10772948	+	566.0	f0_balb.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	67743.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-14004767-2	chr13	14004267	14005267	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178337, intron 12 of 16)	B2_Mm2|SINE|B2	34871.0	NR_130788	70430.0	Mm.260209	NM_178337	ENSMUSG00000039233	Tbce	2610206D02Rik|C530005D02Rik|pmn	tubulin-specific chaperone E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116010456-2	chr11	116009956	116010956	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016905, intron 3 of 7)	intron (NM_016905, intron 3 of 7)	2263.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-36230014-1	chr2	36229514	36230514	+	566.0	f0_balb.idr	promoter-TSS (NM_008969)	promoter-TSS (NM_008969)	-412.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100430524-2	chr7	100430024	100431024	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 21 of 32)	intron (NM_001017985, intron 21 of 32)	-42467.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	15.5	54.0	33.5	22.0	20.0	27.5
Merged-chr12-3500289-2	chr12	3499789	3500789	+	566.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172421, exon 11 of 11)	exon (NM_172421, exon 11 of 11)	-72102.0	NM_001162465	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-6646452-2	chr13	6645952	6646952	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019703, intron 1 of 21)	intron (NM_019703, intron 1 of 21)	2319.0	NM_019703	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-87302348-1	chr2	87301848	87302848	+	566.0	f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-6416.0	NM_207632	404328.0	Mm.377942	NM_207632	ENSMUSG00000083706	Olfr1118	MOR264-22|Olfr1118-ps	olfactory receptor 1118	protein-coding	4.0	0.0	1.5	0.0	0.0	0.0
Merged-chr10-25364850-2	chr10	25364350	25365350	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 1 of 16)	(CA)n|Simple_repeat|Simple_repeat	5052.0	NM_001358751	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68914766-1	chr11	68914266	68915266	+	566.0	f1_c57bl6.idr	Intergenic	L1MC4|LINE|L1	12315.0	NM_145746	252868.0	Mm.76826	NM_145746	ENSMUSG00000032921	Odf4	Oppo1	outer dense fiber of sperm tails 4	protein-coding	1.5	0.0	7.0	10.0	3.0	3.5
Merged-chr4-119977464-1	chr4	119976964	119977964	+	566.0	f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	162786.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	7.5	25.0	9.0	9.5	5.5	18.5
Merged-chr19-32710609-2	chr19	32710108	32711108	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026487, intron 1 of 9)	B1_Mus2|SINE|Alu	1690.0	NM_026487	67979.0	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23572465-1	chr17	23571965	23572965	+	566.0	f1_balb.idr	Intergenic	RLTR20D|LTR|ERVK	-8239.0	NM_001033496	449521.0	Mm.268582	NM_001033496	ENSMUSG00000071256	Zfp213	BC038178|D17Ertd197e	zinc finger protein 213	protein-coding	2.0	0.0	0.0	3.5	6.5	1.5
Merged-chr2-181485736-1	chr2	181485236	181486236	+	566.0	f1_c57bl6.idr	Intergenic	Intergenic	-7470.0	NM_183181	241850.0	Mm.87455	NM_183181	ENSMUSG00000055882	Abhd16b	1700095H12	abhydrolase domain containing 16B	protein-coding	3.5	0.0	0.5	2.5	0.0	0.0
Merged-chr9-96638351-2	chr9	96637851	96638851	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6848.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-97064178-2	chr9	97063678	97064678	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-45823.0	NM_145134	211949.0	Mm.491271	NM_145134	ENSMUSG00000046997	Spsb4	D030068E18Rik|SSB-4|Ssb4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-133743068-2	chr7	133742568	133743568	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357685, intron 3 of 11)	intron (NM_001357685, intron 3 of 11)	17201.0	NM_001286030	101437.0	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32|muDDX32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25218201-2	chr12	25217701	25218701	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89027.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.0	0.0	0.0	0.0	2.0	0.5
Merged-chr11-83852988-2	chr11	83852488	83853488	+	566.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291269)	promoter-TSS (NM_001291269)	28.0	NM_001291269	21410.0	Mm.7226	NM_009330	ENSMUSG00000020679	Hnf1b	HNF-1-beta|HNF-1B|HNF-1Beta|Hnf1beta|LFB3|Tcf-2|Tcf2|vHNF1	HNF1 homeobox B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97810292-2	chr6	97809792	97810792	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	3234.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	1.0	12.0	4.5	2.5	6.0	2.0
Merged-chr7-4473659-1	chr7	4473159	4474159	+	566.0	f1_c57bl6.idr	intron (NM_026146, intron 12 of 19)	B1_Mus1|SINE|Alu	-2775.0	NR_028416	320749.0	Mm.396688	NR_028416		D630041G03Rik	-	RIKEN cDNA D630041G03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-190881572-1	chr1	190881072	190882072	+	566.0	f1_balb.idr	intron (NM_178775, intron 5 of 14)	intron (NM_178775, intron 5 of 14)	30198.0	NM_178775	320119.0	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.0	1.5	1.0	0.0	0.0	0.0
Merged-chr18-5100560-1	chr18	5100060	5101060	+	566.0	f1_balb.idr	intron (NM_001347449, intron 22 of 30)	intron (NM_001347449, intron 22 of 30)	53971.0	NM_001347449	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34644637-3	chr13	34644091	34645091	+	566.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025831, intron 1 of 4)	intron (NM_025831, intron 1 of 4)	8090.0	NM_025831	66895.0	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70841567-1	chr9	70841067	70842067	+	566.0	f0_balb.idr	intron (NM_001324473, intron 1 of 8)	L1ME3|LINE|L1	93241.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	14.0	33.5	25.0	16.5	36.0	21.5
Merged-chr8-88175437-1	chr8	88174937	88175937	+	566.0	f0_balb.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-23776.0	NM_001164499	214627.0	Mm.491211	NM_001164497	ENSMUSG00000036779	Papd5	5730445M16Rik|5830428A09	PAP associated domain containing 5	protein-coding	8.0	2.0	1.0	11.5	5.0	1.0
Merged-chr7-143511347-2	chr7	143510847	143511847	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8823.0	NM_009434	22113.0	Mm.334344	NM_009434	ENSMUSG00000010760	Phlda2	Ipl|Tssc3	pleckstrin homology like domain, family A, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112612380-2	chr12	112611880	112612880	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198411, intron 21 of 22)	intron (NM_198411, intron 21 of 22)	-7667.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31570299-2	chr17	31569818	31570818	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016670, intron 1 of 10)	intron (NM_016670, intron 1 of 10)	5545.0	NM_016670	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165584533-2	chr1	165584033	165585033	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50008.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49861924-2	chr16	49861424	49862424	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 1 of 9)	intron (NM_010581, intron 1 of 9)	6270.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123172099-1	chr5	123171599	123172599	+	566.0	f1_c57bl6.idr	intron (NM_008277, intron 13 of 13)	intron (NM_008277, intron 13 of 13)	10624.0	NM_008277	15445.0	Mm.439709	NM_008277	ENSMUSG00000029445	Hpd	4HPPD|Fla|Flp|Hppd|Laf	4-hydroxyphenylpyruvic acid dioxygenase	protein-coding	3.0	1.5	1.0	3.5	12.0	2.5
Merged-chr19-53540944-2	chr19	53540444	53541444	+	566.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001085390, exon 4 of 4)	exon (NM_001085390, exon 4 of 4)	11626.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84191621-2	chr15	84191121	84192121	+	566.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178614)	promoter-TSS (NM_178614)	-612.0	NM_178614	68653.0	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137636851-2	chr5	137636351	137637351	+	566.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001168652, exon 5 of 18)	exon (NM_001168652, exon 5 of 18)	-4622.0	NM_001081962	751865.0	Mm.200763	NM_001081962	ENSMUSG00000079165	Sap25	-	sin3 associated polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5083949-2	chr19	5083449	5084449	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001885, intron 1 of 1)	intron (NM_001001885, intron 1 of 1)	1528.0	NM_001001885	381199.0	Mm.329663	NM_001001885	ENSMUSG00000061451	Tmem151a	AW125688|Gm961|Tmem151	transmembrane protein 151A	protein-coding	0.5	1.5	0.0	0.5	1.5	0.0
Merged-chr13-75879727-2	chr13	75879229	75880229	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028493, intron 8 of 11)	intron (NM_028493, intron 8 of 11)	39843.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	5.5	2.0	2.5	10.5	3.5	4.0
Merged-chr8-111030229-1	chr8	111029729	111030729	+	566.0	f0_c57.idr	intron (NM_001190786, intron 1 of 11)	B1_Mur1|SINE|Alu	1522.0	NM_001190786	234733.0	Mm.482176	NM_172284	ENSMUSG00000033658	Ddx19b	2810457M08Rik|4921519L13Rik|AW260119	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b	protein-coding	15.5	61.5	43.5	7.0	31.0	8.0
Merged-chr1-16556415-1	chr1	16555915	16556915	+	566.0	f1_c57bl6.idr	intron (NM_001271016, intron 5 of 6)	L1_Mus2|LINE|L1	-37113.0	NM_001347045	29819.0	Mm.216257	NM_025303	ENSMUSG00000025920	Stau2	-	staufen double-stranded RNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94537823-2	chr8	94537323	94538323	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153507, intron 1 of 15)	intron (NM_153507, intron 1 of 15)	4795.0	NM_153507	234577.0	Mm.291815	NM_153507	ENSMUSG00000034361	Cpne2	3322401K10Rik	copine II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59137487-1	chr2	59136987	59137987	+	566.0	f0_balb.idr	intron (NM_001362394, intron 1 of 13)	intron (NM_001362394, intron 1 of 13)	23196.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-26014438-2	chr3	26013938	26014938	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138666, intron 3 of 7)	Lx5c|LINE|L1	139548.0	NM_001163387	192167.0	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-49368847-1	chr6	49368347	49369347	+	566.0	f1_c57bl6.idr	intron (NM_172727, intron 1 of 6)	MTD|LTR|ERVL-MaLR	1108.0	NM_172727	231946.0	Mm.35199	NM_172727	ENSMUSG00000047115	Fam221a	D330028D13Rik	family with sequence similarity 221, member A	protein-coding	1.0	10.0	7.0	2.5	7.5	0.0
Merged-chr11-87450004-2	chr11	87449504	87450504	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	B1_Mus2|SINE|Alu	22413.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34818281-1	chr8	34817781	34818781	+	566.0	f1_balb.idr	intron (NM_176933, intron 3 of 3)	intron (NM_176933, intron 3 of 3)	10671.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	1.0	3.5	0.0	1.0	2.5	0.0
Merged-chr4-63217601-1	chr4	63217101	63218101	+	566.0	f1_c57bl6.idr	intron (NM_025685, intron 1 of 60)	intron (NM_025685, intron 1 of 60)	2189.0	NM_025685	373864.0	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	0.0	5.0	0.5	0.0	5.0	0.0
Merged-chr1-183637142-1	chr1	183636642	183637642	+	566.0	f0_c57.idr	Intergenic	Intergenic	-111835.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	7.5	25.5	6.5	0.0	20.0	1.0
Merged-chr4-111886783-1	chr4	111886283	111887283	+	566.0	f0_balb.idr	intron (NM_145551, intron 11 of 14)	intron (NM_145551, intron 11 of 14)	16013.0	NM_145551	230612.0	Mm.26630	NM_145551	ENSMUSG00000028544	Slc5a9	AI159731|SGLT4	solute carrier family 5 (sodium/glucose cotransporter), member 9	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr17-88062156-1	chr17	88061656	88062656	+	566.0	f1_c57bl6.idr	intron (NM_001081034, intron 1 of 22)	intron (NM_001081034, intron 1 of 22)	2776.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	1.0	6.0	2.0	0.0	2.0	1.0
Merged-chr6-92787523-1	chr6	92787023	92788023	+	566.0	f0_balb.idr	intron (NM_175314, intron 27 of 29)	intron (NM_175314, intron 27 of 29)	-81339.0	NM_001081146	243548.0	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	0.0	3.0	0.5	0.0	2.0	0.0
Merged-chr14-13958162-2	chr14	13957662	13958662	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359900, intron 1 of 8)	intron (NM_001359900, intron 1 of 8)	3151.0	NM_001285780	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80010702-1	chr7	80010202	80011202	+	566.0	f1_balb.idr	Intergenic	B1_Mur3|SINE|Alu	-14112.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.0	2.5	1.0	2.5	0.0	0.0
Merged-chr6-51592794-2	chr6	51592294	51593294	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	47501.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.0	0.5	1.0	0.0	2.0	0.0
Merged-chr17-35807005-2	chr17	35806505	35807505	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-14708.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	0.0	4.5	0.5	0.0	0.0	1.5
Merged-chr9-48263353-2	chr9	48262868	48263868	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77530.0	NM_030069	78252.0	Mm.31626	NM_030069	ENSMUSG00000032028	Nxpe2	4432416J03Rik|AI323362|Fam55b	neurexophilin and PC-esterase domain family, member 2	protein-coding	3.5	12.0	8.0	12.5	5.5	0.0
Merged-chr1-23984259-1	chr1	23983759	23984759	+	566.0	f1_balb.idr	Intergenic	Intergenic	21381.0	NM_026503	68002.0	Mm.250424	NM_026503	ENSMUSG00000026154	Sdhaf4	1110058L19Rik|1700001E18Rik|C6orf57	succinate dehydrogenase complex assembly factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107167918-1	chr4	107167418	107168418	+	566.0	f0_balb.idr	intron (NM_025617, intron 2 of 4)	intron (NM_025617, intron 2 of 4)	10448.0	NM_025617	66526.0	Mm.246956	NM_025617	ENSMUSG00000028619	Tceanc2	2210010B22Rik|2210012G02Rik|6330404A07Rik|AU015593|Tdeanc2	transcription elongation factor A (SII) N-terminal and central domain containing 2	protein-coding	0.5	3.0	0.0	2.0	3.0	1.0
Merged-chr5-124490870-2	chr5	124490370	124491370	+	566.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029532, exon 2 of 2)	3' UTR (NM_029532, exon 2 of 2)	7715.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-47153888-1	chr15	47153388	47154388	+	566.0	f1_balb.idr	Intergenic	Lx2|LINE|L1	530583.0	NR_045811	75281.0	Mm.159487	NR_045811	ENSMUSG00000051198	4930548G14Rik	-	RIKEN cDNA 4930548G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139446313-2	chr7	139445813	139446813	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355162, intron 1 of 15)	RMER19B|LTR|ERVK	45819.0	NM_001355162	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55618992-1	chr1	55618492	55619492	+	566.0	f0_balb.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	213046.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	1.0	1.0	0.0	1.0	1.0	0.0
Merged-chr6-71267804-2	chr6	71267304	71268304	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B1|LTR|ERVK	-3867.0	NR_106192	102465900.0		NR_106192	ENSMUSG00000098623	Mir8112	Gm27739|mmu-mir-8112	microRNA 8112	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-11284087-2	chr10	11283587	11284587	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168297, intron 1 of 2)	MTD|LTR|ERVL-MaLR	2500.0	NM_001168297	71865.0	Mm.276229	NM_027968	ENSMUSG00000047648	Fbxo30	1700026A16Rik|MUSA1	F-box protein 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101265427-1	chr11	101264927	101265927	+	566.0	f0_balb.idr	exon (NM_175638, exon 6 of 19)	exon (NM_175638, exon 6 of 19)	4860.0	NM_175638	69847.0	Mm.23656	NM_175638	ENSMUSG00000035112	Wnk4	2010002J11Rik|Pha2b|Prkwnk4	WNK lysine deficient protein kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-92389287-1	chr2	92388787	92389787	+	566.0	f0_balb.idr	intron (NM_011162, intron 2 of 11)	CpG	-1841.0	NR_105966	102466783.0		NR_105966	ENSMUSG00000099093	Mir7000	Gm27338|mmu-mir-7000	microRNA 7000	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34286778-2	chr5	34286278	34287278	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 1 of 12)	intron (NM_001015039, intron 1 of 12)	1546.0	NM_001015039	231125.0	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126476761-2	chr8	126476261	126477261	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1696.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0.0	0.0	1.0	0.0	0.5	0.0
Merged-chr18-20806495-2	chr18	20805995	20806995	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	-60091.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92732635-1	chr16	92732135	92733135	+	566.0	f0_balb.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-35306.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72929999-2	chr6	72929499	72930499	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	28233.0	NM_001039392	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	0.0	0.0	1.5	0.0	1.5	0.0
Merged-chr2-161110134-2	chr2	161109634	161110634	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-1048.0	NR_126509	71389.0	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58649282-2	chr15	58648782	58649782	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	174145.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164943687-1	chr2	164943187	164944187	+	566.0	f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-4532.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	1.5	4.0	1.0	1.5	4.0	0.0
Merged-chr15-58848654-2	chr15	58848154	58849154	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-23995.0	NM_026642	68260.0	Mm.278805	NM_026642	ENSMUSG00000037085	Trmt12	4632406N01Rik|AI449275|Tyw2	tRNA methyltranferase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-36264849-1	chr8	36264349	36265349	+	566.0	f1_c57bl6.idr	Intergenic	Intergenic	-15333.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	4.0	4.0	13.5	0.5	0.0	3.5
Merged-chr10-128200370-2	chr10	128199870	128200870	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285777, intron 4 of 16)	intron (NM_001285777, intron 4 of 16)	5735.0	NM_001285779	216456.0	Mm.30102	NM_001033264	ENSMUSG00000044005	Gls2	A330074B06Rik|AI195532|GA|GLS|Lga	glutaminase 2 (liver, mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-59342062-2	chr19	59341572	59342572	+	566.0	f0_balb.idr|f0_c57.idr	intron (NM_001033222, intron 1 of 4)	intron (NM_001033222, intron 1 of 4)	3708.0	NM_001033222	107368.0	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130425369-1	chr2	130424869	130425869	+	566.0	f1_c57bl6.idr	promoter-TSS (NM_001114541)	promoter-TSS (NM_001114541)	-728.0	NM_001114541	319513.0	Mm.482539	NM_178762	ENSMUSG00000037773	Pced1a	A930025D01Rik|AI480484|Fam113a	PC-esterase domain containing 1A	protein-coding	27.5	27.5	21.5	12.0	35.5	33.0
Merged-chr10-93285199-1	chr10	93284699	93285699	+	566.0	f1_balb.idr	intron (NM_001322265, intron 1 of 4)	intron (NM_001322265, intron 1 of 4)	25960.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	0.0	0.0	0.0	4.0	0.0	0.0
Merged-chr2-116066249-1	chr2	116065749	116066749	+	566.0	f0_balb.idr	promoter-TSS (NR_153841)	promoter-TSS (NR_153841)	-976.0	NR_153841	654793.0	Mm.448948	NR_153841		G630016G05Rik	-	RIKEN cDNA G630016G05 gene	ncRNA	0.5	0.0	2.5	1.5	0.0	2.5
Merged-chr7-55959837-1	chr7	55959337	55960337	+	566.0	f1_c57bl6.idr	intron (NM_023647, intron 1 of 6)	L2a|LINE|L2	2656.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	14.5	25.5	8.5	7.0	6.5	23.0
Merged-chr1-43828633-2	chr1	43828117	43829117	+	566.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026430)	promoter-TSS (NM_026430)	-909.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34982878-2	chr6	34982378	34983378	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4879.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-44254213-2	chr19	44253713	44254713	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39463.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	5.5	4.0	3.0	4.5	0.5	5.0
Merged-chr3-98313150-1	chr3	98312650	98313650	+	566.0	f1_balb.idr	TTS (NM_016966)	TTS (NM_016966)	26819.0	NM_016966	236539.0	Mm.16898	NM_016966	ENSMUSG00000053398	Phgdh	3-PGDH|3PGDH|4930479N23|A10|PGAD|PGD|PGDH|SERA	3-phosphoglycerate dehydrogenase	protein-coding	0.0	0.0	4.5	2.0	0.5	3.0
Merged-chr15-11993260-2	chr15	11992760	11993760	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011294, intron 2 of 4)	intron (NM_011294, intron 2 of 4)	2747.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-95674538-1	chr2	95674038	95675038	+	566.0	f1_c57bl6.idr	Intergenic	RLTR20A3_MM|LTR|ERVK	-643631.0	NM_001289742	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.0	5.5	1.0	0.0	1.5	0.0
Merged-chr12-99899567-2	chr12	99899067	99900067	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028354, intron 5 of 15)	intron (NM_028354, intron 5 of 15)	15052.0	NM_028354	104884.0	Mm.312323	NM_028354	ENSMUSG00000021177	Tdp1	2810481F14Rik|4921509N21Rik|AI838772|AW493413|E430034L06Rik|MLZ-501|SCAN1	tyrosyl-DNA phosphodiesterase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165887796-2	chr2	165887246	165888246	+	565.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2908.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	3.5	5.0	3.5	0.5	2.5	1.0
Merged-chr3-154285967-2	chr3	154285467	154286467	+	565.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	44593.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr6-42336915-2	chr6	42336415	42337415	+	565.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12275.0	NM_001113327	76156.0	Mm.234314	NM_029528	ENSMUSG00000029861	Fam131b	6330503C03Rik|6530406I18Rik|AV277466	family with sequence similarity 131, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16022724-1	chr7	16022224	16023224	+	565.666687	f1_balb.idr	Intergenic	B1F2|SINE|Alu	-23229.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	4.5	0.0	0.0	0.0	2.0	0.0
Merged-chr13-92741031-3	chr13	92740531	92741531	+	565.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	53787.0	NM_011582	21828.0	Mm.20865	NM_011582	ENSMUSG00000021702	Thbs4	TSP4	thrombospondin 4	protein-coding	9.5	11.0	2.0	15.0	6.5	2.5
Merged-chr13-91361722-3	chr13	91361234	91362234	+	565.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26351.0	NR_045161	320297.0	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36659365-3	chr16	36658849	36659849	+	565.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	6728.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-104178393-2	chr12	104177915	104178915	+	565.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24543.0	NM_008458	16625.0	Mm.422814	NM_008458	ENSMUSG00000066361	Serpina3c	1A1|Kalbp|Klkbp|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3C	protein-coding	13.0	3.5	15.5	9.5	4.0	1.5
Merged-chr17-29767471-2	chr17	29766971	29767971	+	565.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50454.0	NM_001163741	68597.0	Mm.390979	NM_026782	ENSMUSG00000024018	Ccdc167	1110021J02Rik	coiled-coil domain containing 167	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144243801-2	chr2	144243301	144244301	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22401.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148742309-2	chr5	148741809	148742809	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_028285, intron 1 of 1)	B3|SINE|B2	469.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45788624-2	chr19	45788124	45789124	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5071.0	NM_023799	76055.0	Mm.122725	NM_023799	ENSMUSG00000025220	Mgea5	Hy5|Ncoat|OGA	meningioma expressed antigen 5 (hyaluronidase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143464494-2	chr7	143463994	143464994	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3444.0	NM_001161624	12577.0	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39946201-2	chr6	39945701	39946701	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360978, intron 1 of 3)	intron (NM_001360978, intron 1 of 3)	74765.0	NM_001360978	434008.0	Mm.53915	NM_001004182	ENSMUSG00000057716	Tmem178b	A930009E05Rik|EG434008|Gm5567	transmembrane protein 178B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124118502-2	chr5	124118002	124119002	+	565.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_144509)	TTS (NM_144509)	2394.0	NM_144509	65105.0	Mm.29430	NM_144509	ENSMUSG00000029404	Arl6ip4	AA408210|AA408365|Aip-4|Srp25	ADP-ribosylation factor-like 6 interacting protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8337515-2	chr12	8337015	8338015	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021429, intron 5 of 6)	intron (NM_021429, intron 5 of 6)	24082.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0.0	5.5	0.5	4.5	0.0	0.0
Merged-chr15-67032339-2	chr15	67031839	67032839	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62698.0	NM_008681	17988.0	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	1.5	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165640439-2	chr1	165639939	165640939	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5898.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-93545593-2	chr9	93545093	93546093	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-539860.0	NR_040756	78349.0	Mm.52612	NR_040756	ENSMUSG00000100294	1700034K08Rik	-	RIKEN cDNA 1700034K08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44851861-2	chr7	44851361	44852361	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253920, intron 1 of 4)	PB1D10|SINE|Alu	1854.0	NM_001253920	67605.0	Mm.148007	NM_026270	ENSMUSG00000011096	Akt1s1	1110012J22Rik|AI227026|Lobe|Lobel|PRAS40	AKT1 substrate 1 (proline-rich)	protein-coding	0.0	4.5	2.0	8.5	8.5	7.5
Merged-chr3-54797488-2	chr3	54796988	54797988	+	565.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_019483, exon 6 of 6)	exon (NM_019483, exon 6 of 6)	10303.0	NM_133231	170767.0	Mm.185735	NM_133231	ENSMUSG00000036615	Rfxap	5730495K23Rik	regulatory factor X-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128233191-2	chr7	128232691	128233691	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4166.0	NM_146205	233912.0	Mm.475117	NM_146205	ENSMUSG00000042178	Armc5	AW049683|BC032200	armadillo repeat containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35903949-2	chr16	35903449	35904449	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32567.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-118808998-2	chr3	118808498	118809498	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_170778, intron 7 of 22)	intron (NM_170778, intron 7 of 22)	246818.0	NM_170778	99586.0	Mm.27907	NM_170778	ENSMUSG00000033308	Dpyd	AI315208|DHPDHase|DPD|E330028L06Rik	dihydropyrimidine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-114635378-2	chr13	114634878	114635878	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045976, intron 3 of 6)	intron (NR_045976, intron 3 of 6)	28150.0	NR_045976	75161.0	Mm.50406	NM_175218	ENSMUSG00000051758	4930544M13Rik	-	RIKEN cDNA 4930544M13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80111890-1	chr10	80111390	80112390	+	565.5	f1_balb.idr	intron (NR_038088, intron 1 of 4)	B2_Mm1t|SINE|B2	-3913.0	NM_001301853	20869.0	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-158175148-2	chr3	158174648	158175648	+	565.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001291452, exon 18 of 27)	exon (NM_001291452, exon 18 of 27)	138466.0	NM_001289524	67144.0	Mm.358704	NM_024194	ENSMUSG00000063052	Lrrc40	2610040E16Rik|AI837674	leucine rich repeat containing 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90098219-2	chr9	90097719	90098719	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039147, intron 6 of 12)	B2_Mm2|SINE|B2	16601.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135776780-2	chr5	135776280	135777280	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029659, intron 1 of 8)	intron (NM_029659, intron 1 of 8)	1521.0	NM_001289554	76571.0	Mm.247666	NM_029659	ENSMUSG00000019178	Styxl1	1700011C14Rik|Dusp24|Mkstyx	serine/threonine/tyrosine interacting-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr15-95767989-2	chr15	95767489	95768489	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16398.0	NR_131148	629300.0	Mm.247258	NR_131148	ENSMUSG00000115699	Gm6961	EG629300	predicted gene 6961	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108992631-2	chr12	108992131	108993131	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 3 of 6)	intron (NM_177602, intron 3 of 6)	75586.0	NM_001163175	380785.0	Mm.342085	NM_001163175	ENSMUSG00000040867	Begain	BM948371|Gm897	brain-enriched guanylate kinase-associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-139462784-2	chr1	139462284	139463284	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009791, intron 5 of 27)	intron (NM_009791, intron 5 of 27)	8011.0	NM_009791	12316.0	Mm.168523	NM_009791	ENSMUSG00000033952	Aspm	Calmbp1|D330028K02Rik|MCPH5|Sha1	abnormal spindle microtubule assembly	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-107761541-2	chr13	107761041	107762041	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	74144.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63943055-2	chr4	63942555	63943555	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81771.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-30586810-2	chr12	30586310	30587310	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172049, intron 2 of 4)	intron (NM_172049, intron 2 of 4)	2367.0	NM_172049	211986.0	Mm.34035	NM_172049	ENSMUSG00000043061	Tmem18	BC024093	transmembrane protein 18	protein-coding	0.0	1.5	4.0	0.5	3.5	1.5
Merged-chr17-15807357-2	chr17	15806857	15807857	+	565.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_178615, exon 3 of 3)	exon (NM_178615, exon 3 of 3)	19229.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49974538-2	chr16	49974038	49975038	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A0-int|LTR|ERVL-MaLR	-5922.0	NR_045001	628951.0	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-94145256-2	chr2	94144756	94145756	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019657, intron 1 of 10)	intron (NM_019657, intron 1 of 10)	12653.0	NM_019657	56348.0	Mm.22505	NM_019657	ENSMUSG00000027195	Hsd17b12	2610510O05Rik|AI172963|KIK-I|Kik1	hydroxysteroid (17-beta) dehydrogenase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32203802-2	chr16	32203302	32204302	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME4b|LINE|L1	24002.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	0.0	0.0	0.5	4.5	0.0	0.5
Merged-chr10-21602067-2	chr10	21601567	21602567	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_027968, intron 2 of 2)	intron (NR_027968, intron 2 of 2)	8922.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	1.5	3.0	2.5	0.0	1.0	2.5
Merged-chr15-81465261-2	chr15	81464761	81465761	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1055.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150025795-2	chr4	150025277	150026277	+	565.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-16754.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	2.5	12.5	3.0	1.5	4.0	2.0
Merged-chr2-25055596-2	chr2	25055096	25056096	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039386, intron 2 of 15)	intron (NM_001039386, intron 2 of 15)	1217.0	NM_001177655	56876.0	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109775259-2	chr8	109774759	109775759	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-3324.0	NM_009677	11765.0	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37600979-1	chr13	37600479	37601479	+	565.5	f0_balb.idr	Intergenic	Intergenic	-225059.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	18.0	54.5	35.5	28.0	42.5	34.5
Merged-chr11-23733654-2	chr11	23733154	23734154	+	565.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028956)	TTS (NM_028956)	37316.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.0	1.5	1.5	3.5	0.0	1.0
Merged-chr6-128754924-1	chr6	128754424	128755424	+	565.5	f1_c57bl6.idr	Intergenic	Intergenic	-31878.0	NM_001099918	100043861.0	Mm.66911	NM_001099918	ENSMUSG00000079299	Klrb1	4930431A04Rik|Gm4696|Klrb1g|Klrb6|Ly-55|Ly55|NKR-P1G|Nkrp-1e|Nkrp1g	killer cell lectin-like receptor subfamily B member 1	protein-coding	9.0	16.0	13.0	0.0	2.0	0.5
Merged-chr11-103025758-2	chr11	103025258	103026258	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2785.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88589660-2	chr1	88589160	88590160	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38143.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132709662-2	chr4	132709162	132710162	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010166, intron 14 of 17)	MTEb|LTR|ERVL-MaLR	22884.0	NM_201368	381560.0	Mm.44558	NM_201368	ENSMUSG00000037752	Xkr8	4931440N07Rik|AI597014|Gm1031|XRG8|mXkr8	X-linked Kx blood group related 8	protein-coding	0.0	0.5	0.0	1.5	1.5	3.0
Merged-chr10-8721068-2	chr10	8720568	8721568	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	165002.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80584049-2	chr10	80583549	80584549	+	565.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_145421, exon 5 of 5)	exon (NM_145421, exon 5 of 5)	6292.0	NM_145421	216169.0	Mm.29802	NM_145421	ENSMUSG00000003346	Abhd17a	1700013O15Rik|BC005632|D10Bwg1364e|Fam108a	abhydrolase domain containing 17A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3328889-2	chr19	3328389	3329389	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 1 of 18)	intron (NM_013495, intron 1 of 18)	5588.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94192813-2	chr8	94192313	94193313	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13724.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-70709337-2	chr2	70708837	70709837	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47828.0	NM_027352	70231.0	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-12506832-2	chr1	12506332	12507332	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80846.0	NR_105759	102465961.0		NR_105759	ENSMUSG00000098555	Mir6341	Gm27262|mmu-mir-6341	microRNA 6341	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27290138-2	chr2	27289605	27290605	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 11 of 29)	intron (NR_133905, intron 11 of 29)	-42802.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-38128623-2	chr1	38128123	38129123	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359288, intron 1 of 25)	intron (NM_001359288, intron 1 of 25)	1043.0	NM_001359287	56210.0	Mm.389103	NM_019570	ENSMUSG00000026082	Rev1	1110027I23Rik|AU022044|Rev1l	REV1, DNA directed polymerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84387625-2	chr12	84387125	84388125	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001026214, intron 6 of 15)	intron (NM_001026214, intron 6 of 15)	13309.0	NM_001286058	12499.0	Mm.10211	NM_007647	ENSMUSG00000021236	Entpd5	AI196558|AI987697|Cd39l4|ER-UDPase|NTPDase-5|NTPDase5|Pcph|mNTPase	ectonucleoside triphosphate diphosphohydrolase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-66138371-2	chr12	66137871	66138871	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146030.0	NM_001162933	238217.0	Mm.188575	NM_001162933	ENSMUSG00000060499	Rpl10l	EG238217	ribosomal protein L10-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-132325263-2	chr3	132324763	132325763	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	239971.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100021845-2	chr7	100021345	100022345	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291320, intron 3 of 10)	(CAGAGA)n|Simple_repeat|Simple_repeat	11927.0	NM_001291320	69121.0	Mm.285295	NM_133709	ENSMUSG00000030732	Chrdl2	1810022C01Rik|Chl2	chordin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-83683626-2	chr12	83683126	83684126	+	565.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027349)	TTS (NM_027349)	-4526.0	NM_001362271	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-157416001-1	chr1	157415501	157416501	+	565.5	f0_balb.idr	intron (NR_027984, intron 2 of 2)	intron (NR_027984, intron 2 of 2)	-3406.0	NM_177644	226525.0	Mm.235028	NM_177644	ENSMUSG00000070565	Rasal2	6530401P13|A330066M24Rik	RAS protein activator like 2	protein-coding	21.5	19.5	9.0	19.5	33.0	20.5
Merged-chr9-99353657-2	chr9	99353157	99354157	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177775, intron 1 of 22)	intron (NM_177775, intron 1 of 22)	4873.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-24499103-2	chr9	24498603	24499603	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359948, intron 1 of 22)	(CA)n|Simple_repeat|Simple_repeat	4037.0	NM_001359948	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32395319-2	chr16	32394819	32395819	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-5187.0	NM_001160402	277203.0	Mm.484240	NM_001160402	ENSMUSG00000079625	Tm4sf19	EG277203	transmembrane 4 L six family member 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120688086-2	chr8	120687586	120688586	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	19766.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-69536730-2	chr18	69536230	69537230	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 6 of 19)	intron (NM_001361128, intron 6 of 19)	190570.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75011817-1	chr14	75011317	75012317	+	565.5	f1_c57bl6.idr	intron (NR_030568, intron 3 of 3)	L1_Mus3|LINE|L1	-4210.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21790711-2	chr16	21790211	21791211	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2877.0	NM_023737	74147.0	Mm.28100	NM_023737	ENSMUSG00000022853	Ehhadh	1300002P22Rik|HD|L-PBE|LBFP|LBP|MFP|MFP1|PBFE	enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79953059-2	chr8	79952559	79953559	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	104949.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86153635-2	chr15	86153135	86154135	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 6 of 12)	intron (NM_145475, intron 6 of 12)	-32093.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	1.0	3.5	3.5	0.0	0.0	2.0
Merged-chr14-122061442-2	chr14	122060942	122061942	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	26768.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-5058810-2	chr7	5058310	5059310	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146178, intron 3 of 4)	intron (NM_146178, intron 3 of 4)	2084.0	NM_146178	232821.0	Mm.482157	NM_146178	ENSMUSG00000035228	Ccdc106	BC018462	coiled-coil domain containing 106	protein-coding	1.0	2.5	6.0	1.0	2.5	6.0
Merged-chr3-33496049-2	chr3	33495549	33496549	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-304134.0	NM_027619	67120.0	Mm.275710	NM_025978	ENSMUSG00000027677	Ttc14	2700016E08Rik|4930434D01Rik|4931403I22Rik|4933402I15Rik|AI662468|AU014779|AW561908|cI-44|mKIAA1980	tetratricopeptide repeat domain 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150626974-2	chr4	150626474	150627474	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	25200.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-25152221-2	chr1	25151721	25152721	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175642, intron 19 of 30)	intron (NM_175642, intron 19 of 30)	125733.0	NM_001204913	100504323.0	Mm.484176	NM_001204913		Gm20172	-	predicted gene, 20172	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-48958741-2	chr13	48958241	48959241	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033268, intron 1 of 17)	intron (NM_001033268, intron 1 of 17)	9087.0	NM_001033268	218236.0	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41293282-2	chr19	41292782	41293782	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 12 of 16)	L2c|LINE|L2	-29278.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6457331-2	chr15	6456831	6457831	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013485, intron 1 of 10)	intron (NM_013485, intron 1 of 10)	11998.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-45673651-2	chr18	45673151	45674151	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080465, intron 5 of 7)	intron (NM_080465, intron 5 of 7)	113497.0	NM_080465	140492.0	Mm.411614	NM_080465	ENSMUSG00000054477	Kcnn2	KCa2.2|SK2|SKCA2|bc|fri	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84979787-2	chr15	84979287	84980287	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	8184.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33953418-2	chr16	33952918	33953918	+	565.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	13620.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110921878-3	chr7	110921390	110922390	+	565.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194464, intron 9 of 20)	intron (NM_194464, intron 9 of 20)	16905.0	NR_045267	100504184.0	Mm.441327	NR_045267	ENSMUSG00000087160	Gm16336	-	predicted gene 16336	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112860477-3	chr12	112859928	112860928	+	565.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019925, intron 1 of 2)	intron (NM_019925, intron 1 of 2)	488.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-82203691-2	chr2	82203190	82204190	+	565.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_175513, intron 1 of 3)	L1Md_F2|LINE|L1	150032.0	NM_175513	241514.0	Mm.119383	NM_175513	ENSMUSG00000070866	Zfp804a	C630007C17Rik|Znf804a	zinc finger protein 804A	protein-coding	3.0	1.0	2.0	0.0	0.5	2.0
Merged-chr2-19350404-2	chr2	19349904	19350904	+	565.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_126563, intron 3 of 3)	intron (NR_126563, intron 3 of 3)	6087.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-51876008-2	chr6	51875508	51876508	+	565.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_018773, intron 10 of 12)	intron (NM_018773, intron 10 of 12)	136541.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98959732-2	chr13	98959225	98960225	+	565.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	24840.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	8.5	25.0	25.5	5.5	8.5	7.0
Merged-chr3-95681705-2	chr3	95681205	95682205	+	565.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_144899, exon 8 of 18)	exon (NM_144899, exon 8 of 18)	6212.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167843645-2	chr2	167843145	167844145	+	565.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-88682.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64403676-3	chr13	64403131	64404131	+	565.166687	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-28922.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	7.0	8.0	5.0	17.0	19.5	22.5
Merged-chr2-174673750-2	chr2	174673250	174674250	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001099328, intron 3 of 4)	intron (NM_001099328, intron 3 of 4)	30216.0	NM_001099328	100043757.0	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	-	zinc finger protein 831	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35721936-2	chr2	35721436	35722436	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001602, intron 11 of 13)	intron (NM_001001602, intron 11 of 13)	25204.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24920557-1	chr13	24920057	24921057	+	565.0	f0_balb.idr	intron (NM_172532, intron 4 of 9)	intron (NM_172532, intron 4 of 9)	14957.0	NR_045182	73326.0	Mm.458692	NR_045182	ENSMUSG00000086796	4932702P03Rik	1700047I16Rik	RIKEN cDNA 4932702P03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-120456029-2	chr6	120455529	120456529	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7168.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85585054-1	chr1	85584554	85585554	+	565.0	f1_balb.idr	intron (NM_030194, intron 7 of 11)	intron (NM_030194, intron 7 of 11)	13756.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51616282-2	chr11	51615782	51616782	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-3491.0	NM_026631	52530.0	Mm.28203	NM_026631	ENSMUSG00000001056	Nhp2	2410130M07Rik|D11Ertd175e|Nola2	NHP2 ribonucleoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-104561449-2	chr1	104560949	104561949	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL2|LINE|L1	-207071.0	NM_011800	23836.0	Mm.103640	NM_011800	ENSMUSG00000050840	Cdh20	Cdh7	cadherin 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53563442-2	chr19	53562942	53563942	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	34124.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-48889221-1	chr15	48888721	48889721	+	565.0	f1_c57bl6.idr	Intergenic	Intergenic	-97232.0	NM_001081391	239420.0	Mm.309363	NM_001081391	ENSMUSG00000022311	Csmd3	4930500N14Rik|mKIAA1894	CUB and Sushi multiple domains 3	protein-coding	0.0	4.0	0.0	0.0	7.5	1.5
Merged-chr17-23670385-2	chr17	23669885	23670885	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357380, intron 5 of 13)	intron (NM_001357380, intron 5 of 13)	-3223.0	NM_181821	353502.0	Mm.359030	NM_181821	ENSMUSG00000023904	Hcfc1r1	HPIP	host cell factor C1 regulator 1 (XPO1-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79950959-1	chr15	79950459	79951459	+	565.0	f1_c57bl6.idr	Intergenic	Intergenic	-18313.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	0.0	1.5	4.5	0.0	1.5	1.5
Merged-chr10-80939413-1	chr10	80938913	80939913	+	565.0	f0_balb.idr	Intergenic	Intergenic	9322.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-112775011-1	chr2	112774511	112775511	+	565.0	f0_balb.idr	intron (NM_001319156, intron 47 of 103)	intron (NM_001319156, intron 47 of 103)	156594.0	NM_001355631	74268.0	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr8-109278013-1	chr8	109277513	109278513	+	565.0	f1_balb.idr	Intergenic	Intergenic	-28268.0	NR_151498	105243282.0	Mm.203332	NR_151498		4922502B01Rik	2900056M07Rik	RIKEN cDNA 4922502B01 gene	ncRNA	11.5	0.0	5.0	0.0	1.0	0.0
Merged-chr4-134570509-2	chr4	134570009	134571009	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 8 of 11)	intron (NM_207237, intron 8 of 11)	-2658.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-85159414-2	chr6	85158914	85159914	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21650.0	NM_011467	20751.0	Mm.28393	NM_011467	ENSMUSG00000033735	Spr	AA409688|Gm10328	sepiapterin reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84206308-2	chr12	84205808	84206808	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	-12293.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87787941-1	chr17	87787441	87788441	+	565.0	f1_balb.idr	intron (NM_199251, intron 1 of 1)	intron (NM_199251, intron 1 of 1)	10053.0	NM_199251	210741.0	Mm.312046	NM_199251	ENSMUSG00000050138	Kcnk12	mntk1	potassium channel, subfamily K, member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46394028-2	chr19	46393528	46394528	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016860, intron 1 of 10)	intron (NM_016860, intron 1 of 10)	1707.0	NM_016860	54130.0	Mm.3118	NM_016860	ENSMUSG00000025228	Actr1a	Arp1|alpha-Arp1	ARP1 actin-related protein 1A, centractin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-14352280-2	chr14	14351780	14352780	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008369, intron 10 of 11)	intron (NM_008369, intron 10 of 11)	5785.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89162104-2	chr15	89161604	89162604	+	565.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_106066)	TTS (NR_106066)	804.0	NR_106066	102465672.0		NR_106066	ENSMUSG00000106328	Mir7118	mmu-mir-7118	microRNA 7118	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-79294976-1	chr18	79294476	79295476	+	565.0	f0_balb.idr	Intergenic	Intergenic	-185585.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166775204-2	chr2	166774704	166775704	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-18563.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80227124-1	chr7	80226624	80227624	+	565.0	f1_balb.idr	TTS (NM_013659)	TTS (NM_013659)	5681.0	NM_001291276	23991.0	Mm.30217	NM_011870	ENSMUSG00000030538	Cib1	Cibkip|Kip|Prkdcip	calcium and integrin binding 1 (calmyrin)	protein-coding	0.0	0.0	0.0	0.0	3.5	0.0
Merged-chr3-27937313-1	chr3	27936813	27937813	+	565.0	f0_balb.idr	Intergenic	Intergenic	-1367.0	NM_001164056	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83156249-2	chr8	83155749	83156749	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-9103.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	5.0	4.0	14.5	22.5	44.0	12.0
Merged-chr2-129372153-1	chr2	129371653	129372653	+	565.0	f1_c57bl6.idr	intron (NR_015474, intron 1 of 2)	intron (NR_015474, intron 1 of 2)	-1014.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	13.0	52.0	27.0	17.5	41.0	28.5
Merged-chr8-119354037-2	chr8	119353537	119354537	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9499.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9675067-1	chr4	9674567	9675567	+	565.0	f1_balb.idr	Intergenic	Intergenic	-5723.0	NM_001290367	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0.5	1.5	2.5	0.0	0.5	6.5
Merged-chr10-83149828-1	chr10	83149328	83150328	+	565.0	f0_balb.idr	intron (NM_021439, intron 2 of 2)	intron (NM_021439, intron 2 of 2)	164331.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98719104-2	chr7	98718604	98719604	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15857.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-85553281-1	chr8	85552781	85553781	+	565.0	f1_balb.idr	exon (NM_019794, exon 3 of 9)	exon (NM_019794, exon 3 of 9)	1990.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	6.0	1.5	7.0	2.0	14.5	4.5
Merged-chr13-91509192-1	chr13	91508692	91509692	+	565.0	f0_balb.idr	intron (NM_001360776, intron 1 of 15)	intron (NM_001360776, intron 1 of 15)	48095.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	14.5	22.5	6.0	12.5	17.5	18.0
Merged-chr12-112962479-2	chr12	112961979	112962979	+	565.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028193, exon 15 of 18)	exon (NM_028193, exon 15 of 18)	-14003.0	NM_001145900	399566.0	Mm.440140	NM_201646	ENSMUSG00000002803	Btbd6	-	BTB (POZ) domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29987480-1	chr6	29986980	29987980	+	565.0	f1_c57bl6.idr	intron (NR_040264, intron 1 of 1)	ORR1D2|LTR|ERVL-MaLR	2151.0	NR_040263	76419.0	Mm.84522	NR_040263	ENSMUSG00000045709	Smkr-ps	1700023L04Rik	smal lysine rich protein 1, pseudogene	ncRNA	0.0	0.0	1.5	7.0	5.0	1.0
Merged-chr11-100478118-1	chr11	100477618	100478618	+	565.0	f0_balb.idr	TTS (NR_130343)	TTS (NR_130343)	362.0	NR_130343	102465671.0		NR_130343	ENSMUSG00000104854	Mir7116	mmu-mir-7116	microRNA 7116	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73536674-2	chr7	73536174	73537174	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	5072.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-10268563-1	chr1	10268063	10269063	+	565.0	f0_balb.idr	Intergenic	Intergenic	-35893.0	NM_001102430	211673.0	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-101948638-1	chr3	101948138	101949138	+	565.0	f1_c57bl6.idr	Intergenic	L1MEg|LINE|L1	-24185.0	NM_001039371	242126.0	Mm.90204	NM_001039371	ENSMUSG00000033147	Slc22a15	2610034P21Rik|4930477M19|A530052I06Rik|BB219042	solute carrier family 22 (organic anion/cation transporter), member 15	protein-coding	0.0	0.5	1.0	1.0	0.0	2.0
Merged-chr16-74413096-1	chr16	74412596	74413596	+	565.0	f1_balb.idr	intron (NM_001358493, intron 1 of 28)	intron (NM_001358493, intron 1 of 28)	-1271.0	NM_175549	268902.0	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	4.0	0.0	1.0	3.0	0.0	2.5
Merged-chr7-35041596-2	chr7	35041096	35042096	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 13 of 14)	intron (NM_008820, intron 13 of 14)	14970.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114294726-2	chr7	114294223	114295223	+	565.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-18607.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	4.5	0.0	0.0	8.5	4.0	0.5
Merged-chr2-154373382-2	chr2	154372882	154373882	+	565.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025876)	promoter-TSS (NM_025876)	-663.0	NM_025876	66971.0	Mm.289427	NM_025876	ENSMUSG00000027487	Cdk5rap1	2310066P17Rik	CDK5 regulatory subunit associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128792193-1	chr10	128791693	128792693	+	565.0	f0_c57.idr	intron (NM_021412, intron 2 of 8)	B2_Mm2|SINE|B2	1238.0	NM_021412	58223.0	Mm.131266	NM_021412	ENSMUSG00000025355	Mmp19	-	matrix metallopeptidase 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-70527758-2	chr10	70527258	70528258	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359551, intron 7 of 14)	intron (NM_001359551, intron 7 of 14)	65054.0	NM_001162846	70911.0	Mm.19825	NM_178621	ENSMUSG00000037747	Phyhipl	4921522K17Rik|AI267048	phytanoyl-CoA hydroxylase interacting protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33918847-2	chr17	33918347	33919347	+	565.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009318)	promoter-TSS (NM_009318)	-631.0	NM_001025313	21356.0	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	24.5	23.0	23.5	2.5	47.5	34.5
Merged-chr6-83046971-1	chr6	83046471	83047471	+	565.0	f1_balb.idr	intron (NM_013586, intron 4 of 13)	intron (NM_013586, intron 4 of 13)	-2740.0	NR_106007	102465630.0		NR_106007	ENSMUSG00000099035	Mir7040	Gm27489|mmu-mir-7040	microRNA 7040	ncRNA	0.0	4.5	0.0	0.0	4.5	0.0
Merged-chr13-119442304-1	chr13	119441804	119442804	+	565.0	f0_balb.idr	intron (NM_145457, intron 4 of 10)	MTC|LTR|ERVL-MaLR	13402.0	NM_145457	218693.0	Mm.490243	NM_145457	ENSMUSG00000025451	Paip1	PAIP-1	polyadenylate binding protein-interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62962654-2	chr9	62962154	62963154	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 1 of 13)	intron (NM_019663, intron 1 of 13)	18225.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7827691-1	chr10	7827191	7828191	+	565.0	f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-4779.0	NM_172785	237256.0	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	0.0	3.0	2.5	0.0	7.5	4.0
Merged-chr11-70129278-2	chr11	70128778	70129778	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1079.0	NM_145137	216864.0	Mm.222465	NM_145137	ENSMUSG00000040950	Mgl2	CD301b	macrophage galactose N-acetyl-galactosamine specific lectin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-23763456-2	chr1	23762956	23763956	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172124, intron 1 of 3)	intron (NM_172124, intron 1 of 3)	1530.0	NM_172124	280645.0	Mm.471661	NM_172124	ENSMUSG00000026156	B3gat2	GlcAT-S|Glcats	beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88697515-1	chr1	88697015	88698015	+	565.0	f0_balb.idr	TTS (NM_177305)	TTS (NM_177305)	4676.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-47951660-2	chr8	47951160	47952160	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133791, intron 1 of 22)	intron (NM_133791, intron 1 of 22)	38891.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9718734-2	chr3	9718234	9719234	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 2 of 7)	B3A|SINE|B2	-108649.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139351049-2	chr5	139350549	139351549	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1568.0	NM_001160265	545817.0	Mm.482474	NM_001160265	ENSMUSG00000029541	Cyp2w1	Gm455	cytochrome P450, family 2, subfamily w, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102002848-2	chr5	102002349	102003349	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	67072.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	18.0	75.5	47.5	16.5	66.0	63.0
Merged-chr9-44315282-1	chr9	44314782	44315782	+	565.0	f1_balb.idr	intron (NM_001359259, intron 8 of 13)	intron (NM_001359259, intron 8 of 13)	5000.0	NM_001359259	71764.0	Mm.491174	NM_027909	ENSMUSG00000032120	C2cd2l	1300006O23Rik|Tmem24	C2 calcium-dependent domain containing 2-like	protein-coding	8.5	2.5	3.0	3.0	8.5	2.0
Merged-chr7-63991660-2	chr7	63991167	63992167	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52752.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	3.5	0.5	0.5	1.0	0.0	0.0
Merged-chr4-126198912-2	chr4	126198412	126199412	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356455, intron 1 of 11)	intron (NM_001356455, intron 1 of 11)	2095.0	NM_001356456	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	3.0	2.0	4.0	3.0	0.0	5.0
Merged-chr2-132271775-2	chr2	132271275	132272275	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291040, intron 1 of 3)	intron (NM_001291040, intron 1 of 3)	8627.0	NM_138651	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-53994822-2	chr5	53994322	53995322	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3701.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0.5	4.0	1.5	0.5	4.0	1.0
Merged-chr15-3994944-1	chr15	3994444	3995444	+	565.0	f0_balb.idr	intron (NM_145930, intron 1 of 5)	intron (NM_145930, intron 1 of 5)	808.0	NM_145930	106064.0	Mm.21299	NM_145930	ENSMUSG00000041935	AW549877	AI195826	expressed sequence AW549877	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-81053574-2	chr16	81053074	81054074	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	-147123.0	NM_001113208	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87768120-1	chr11	87767620	87768620	+	565.0	f1_balb.idr	intron (NM_172449, intron 10 of 31)	intron (NM_172449, intron 10 of 31)	7579.0	NM_172449	207777.0	Mm.342019	NM_172449	ENSMUSG00000034156	Tspoap1	Bzrap1|D230016K05|PRAX-1|mKIAA0612	TSPO associated protein 1	protein-coding	1.5	0.0	3.5	0.0	0.5	2.0
Merged-chr2-128706981-1	chr2	128706481	128707481	+	565.0	f1_balb.idr	intron (NM_008587, intron 1 of 18)	MERVL_2A-int|LTR|ERVL	8066.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	13.0	27.5	27.5	27.0	20.5	24.5
Merged-chr4-95216646-2	chr4	95216146	95217146	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4_19-int|LTR|ERVK	-164424.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3476200-2	chr8	3475700	3476700	+	565.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029598, exon 2 of 9)	exon (NM_029598, exon 2 of 9)	5338.0	NM_029598	76406.0	Mm.74996	NM_029598	ENSMUSG00000040340	Tex45	1700019B03Rik	testis expressed 45	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96565547-1	chr10	96565047	96566047	+	565.0	f1_balb.idr	Intergenic	L1MC4|LINE|L1	-51454.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	6.5	0.0	0.0	1.0	1.0	0.0
Merged-chr8-115110566-2	chr8	115110066	115111066	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019573, intron 8 of 8)	intron (NM_019573, intron 8 of 8)	596328.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-115184908-1	chr10	115184408	115185408	+	565.0	f0_balb.idr	5' UTR (NM_173391, exon 1 of 11)	5' UTR (NM_173391, exon 1 of 11)	114.0	NM_173391	216343.0	Mm.31597	NM_173391	ENSMUSG00000006764	Tph2	AU043594|Ntph	tryptophan hydroxylase 2	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr2-162966959-1	chr2	162966459	162967459	+	565.0	f1_c57bl6.idr	intron (NM_001081338, intron 17 of 22)	intron (NM_001081338, intron 17 of 22)	-20522.0	NM_001291154	27219.0	Mm.26462	NM_013731	ENSMUSG00000017868	Sgk2	AI098171|AW146006|Sgkl	serum/glucocorticoid regulated kinase 2	protein-coding	0.0	7.0	0.0	0.0	0.0	0.0
Merged-chr19-34539613-1	chr19	34539113	34540113	+	565.0	f0_balb.idr	Intergenic	Intergenic	-11081.0	NM_008332	15958.0	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38549739-2	chr6	38549239	38550239	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1595.0	NM_138680	192196.0	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-126167361-2	chr2	126166861	126167861	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15220.0	NM_026981	69185.0	Mm.29019	NM_026981	ENSMUSG00000023330	Dtwd1	1810033A06Rik	DTW domain containing 1	protein-coding	0.0	9.5	0.0	0.0	9.5	0.0
Merged-chr1-183963186-1	chr1	183962686	183963686	+	565.0	f1_balb.idr	Intergenic	Intergenic	70812.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	4.0	5.5	7.5	1.0	0.0	1.0
Merged-chr8-94871162-2	chr8	94870662	94871662	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053246, intron 1 of 8)	C-rich|Low_complexity|Low_complexity	5150.0	NM_053246	114255.0	Mm.203949	NM_053246	ENSMUSG00000040631	Dok4	-	docking protein 4	protein-coding	0.0	0.0	0.5	0.0	2.0	0.5
Merged-chr13-113621797-2	chr13	113621297	113622297	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CYRA11_Mm|Unknown|Y-chromosome	-3233.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54593829-1	chr13	54593329	54594329	+	565.0	f0_balb.idr	3' UTR (NM_001347512, exon 6 of 6)	3' UTR (NM_001347512, exon 6 of 6)	3598.0	NM_025933	67044.0	Mm.29353	NM_025933	ENSMUSG00000025868	Higd2a	2010110M21Rik|AA690237	HIG1 domain family, member 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-82996015-2	chr6	82995515	82996515	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 4 of 9)	B2_Mm2|SINE|B2	37456.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	3.0	2.5	7.0	1.5	7.0	2.0
Merged-chr7-7138646-2	chr7	7138146	7139146	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-1891.0	NM_029584	76373.0	Mm.159732	NM_029584	ENSMUSG00000063535	Zfp773	2810409K11Rik	zinc finger protein 773	protein-coding	0.0	1.5	1.5	0.0	0.0	0.5
Merged-chr7-116307013-1	chr7	116306513	116307513	+	565.0	f0_balb.idr	intron (NM_001305185, intron 3 of 26)	intron (NM_001305185, intron 3 of 26)	1363.0	NM_001305185	233765.0	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55811385-1	chr19	55810885	55811885	+	565.0	f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	(TG)n|Simple_repeat|Simple_repeat	69575.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	4.0	3.0	0.0	2.5	5.0
Merged-chr13-106931918-2	chr13	106931418	106932418	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360897, intron 1 of 30)	B1_Mus1|SINE|Alu	5040.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	1.5	0.0	0.0	9.0	0.0	0.0
Merged-chr10-81628404-1	chr10	81627904	81628904	+	565.0	f0_balb.idr	promoter-TSS (NM_027480)	promoter-TSS (NM_027480)	-136.0	NM_027480	70615.0	Mm.304382	NM_027480	ENSMUSG00000054708	Ankrd24	4631433D01Rik|5730519E19Rik|D10Bur2e	ankyrin repeat domain 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66730151-1	chr15	66729651	66730651	+	565.0	f1_balb.idr	intron (NM_009375, intron 27 of 47)	MLT1H|LTR|ERVL-MaLR	59381.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	10.5	9.0	12.5	7.5	21.5	6.5
Merged-chr9-40821701-1	chr9	40821201	40822201	+	565.0	f1_balb.idr	Intergenic	Intergenic	20428.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	1.5	0.0	5.0	2.0	2.0	2.5
Merged-chr19-40710036-1	chr19	40709536	40710536	+	565.0	f1_balb.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	50266.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	5.0	5.5	8.5	10.0	3.0	7.0
Merged-chr11-69703074-1	chr11	69702574	69703574	+	565.0	f1_balb.idr	Intergenic	L1MC4|LINE|L1	-6976.0	NM_001159503	619441.0	Mm.8983	NM_001034097	ENSMUSG00000018752	Tnfsfm13	Tnfsf12-Tnfsf13|Tnfsf12Tnfsf13|Tnfsf12tnfsf13|Twe-pril	tumor necrosis factor (ligand) superfamily, membrane-bound member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr1-173599226-1	chr1	173598726	173599726	+	565.0	f0_c57.idr	promoter-TSS (NM_001177349)	promoter-TSS (NM_001177349)	48.0	NM_001177349	623121.0	Mm.138449	NM_001033384	ENSMUSG00000073491	Ifi213	E030037K03Rik|E430029J22Rik|Pydc4|Pyr-A	interferon activated gene 213	protein-coding	16.5	60.5	22.5	0.0	9.0	0.5
Merged-chr16-55706690-2	chr16	55706190	55707190	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	115448.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97544867-2	chr11	97544367	97545367	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 3 of 19)	intron (NM_018873, intron 3 of 19)	30259.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109414887-1	chr11	109414387	109415387	+	565.0	f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11059.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	0.0	4.0	1.5	2.0	6.0	3.5
Merged-chr11-85845360-2	chr11	85844860	85845860	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12745.0	NM_009324	21385.0	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44124046-1	chr7	44123546	44124546	+	565.0	f0_balb.idr	Intergenic	RLTR45|LTR|ERVK	11373.0	NM_010114	13646.0	Mm.5193	NM_010114	ENSMUSG00000060177	Klk1b22	EGF-BP A|Egfbp-1|Egfbp1|Klk22|mGk-22	kallikrein 1-related peptidase b22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-34299696-1	chr12	34299196	34300196	+	565.0	f0_balb.idr	intron (NM_001271386, intron 16 of 27)	ORR1D2|LTR|ERVL-MaLR	229193.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0.0	3.0	0.5	4.0	3.0	3.0
Merged-chr11-46065778-2	chr11	46065293	46066293	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291890, intron 3 of 22)	intron (NM_001291890, intron 3 of 22)	9809.0	NM_001291891	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95270583-1	chr4	95270083	95271083	+	565.0	f0_balb.idr	Intergenic	Intergenic	-218361.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81371913-1	chr7	81371413	81372413	+	565.0	f0_balb.idr	intron (NM_001357107, intron 1 of 9)	intron (NM_001357107, intron 1 of 9)	562.0	NM_001357107	12877.0	Mm.273122	NM_007755	ENSMUSG00000025586	Cpeb1	AU024112|Cpe-bp1|Cpeb|mCPEB|mCpeb-1	cytoplasmic polyadenylation element binding protein 1	protein-coding	0.0	2.5	0.5	0.0	0.0	0.5
Merged-chr5-114616733-2	chr5	114616233	114617233	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	41688.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45871222-1	chr7	45870722	45871722	+	565.0	f1_c57bl6.idr	Intergenic	Intergenic	-1618.0	NM_133950	68137.0	Mm.298433	NM_133950	ENSMUSG00000002778	Kdelr1	8030486F04Rik|AW215843|Erd2.1	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1	protein-coding	0.0	0.0	0.5	0.0	1.5	0.5
Merged-chr19-6223876-1	chr19	6223376	6224376	+	565.0	f1_c57bl6.idr	3' UTR (NM_001165919, exon 11 of 11)	3' UTR (NM_001165919, exon 11 of 11)	-2525.0	NM_130453	170458.0	Mm.379306	NM_130453	ENSMUSG00000024784	Gpha2	GPA2|zsig51	glycoprotein hormone alpha 2	protein-coding	0.0	0.0	1.5	0.0	0.0	5.5
Merged-chr12-112664214-1	chr12	112663714	112664714	+	565.0	f1_balb.idr	intron (NM_001331107, intron 2 of 13)	intron (NM_001331107, intron 2 of 13)	-4863.0	NR_105904	102465566.0		NR_105904	ENSMUSG00000098380	Mir6939	Gm27498|mmu-mir-6939	microRNA 6939	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-51083946-1	chr19	51083446	51084446	+	565.0	f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-405300.0	NM_001290356	58178.0	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding	0.0	3.5	0.0	0.0	1.5	0.0
Merged-chr6-54080476-1	chr6	54079976	54080976	+	565.0	f0_balb.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	40544.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0.5	5.5	5.5	0.0	0.0	4.0
Merged-chr5-35750407-2	chr5	35749907	35750907	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7473.0	NM_001177697	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	0.0	0.0	0.0	1.0	1.0	0.0
Merged-chr10-24628874-2	chr10	24628374	24629374	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD|LINE|L1	33432.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-58877116-1	chr18	58876616	58877616	+	565.0	f1_balb.idr	intron (NM_175506, intron 2 of 22)	Lx6|LINE|L1	40753.0	NM_175506	240322.0	Mm.71963	NM_175506	ENSMUSG00000053441	Adamts19	4831407I23Rik|AU015154|D230034E10Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 19	protein-coding	0.0	0.0	0.0	2.5	0.0	0.0
Merged-chr19-58180743-2	chr19	58180243	58181243	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115461.0	NR_040449	791347.0	Mm.452208	NR_040449		Gm10007	-	predicted gene 10007	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118517987-2	chr7	118517487	118518487	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304758, intron 5 of 6)	intron (NM_001304758, intron 5 of 6)	15369.0	NM_001304758	12850.0	Mm.20634	NM_009940	ENSMUSG00000030652	Coq7	clk-1	demethyl-Q 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100471965-2	chr11	100471465	100472465	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155072, intron 1 of 2)	CpG	817.0	NR_155072	217194.0	Mm.183320	NM_172565	ENSMUSG00000048732	Klhl11	BC011167	kelch-like 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65888339-1	chr5	65887839	65888839	+	565.0	f0_balb.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	24770.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-10953088-2	chr6	10952588	10953588	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	21290.0	NR_033776	57866.0	Mm.4397	NR_033776		AA545190	-	EST AA545190	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45945573-1	chr7	45945073	45946073	+	565.0	f1_balb.idr	intron (NM_001033243, intron 9 of 12)	MTB_Mm|LTR|ERVL-MaLR	17175.0	NM_001033243	211535.0	Mm.227539	NM_001033243	ENSMUSG00000040189	Ccdc114	-	coiled-coil domain containing 114	protein-coding	10.5	0.0	1.5	0.0	2.0	2.0
Merged-chr13-97138692-2	chr13	97138192	97139192	+	565.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021552)	promoter-TSS (NM_021552)	755.0	NM_001271464	320806.0	Mm.219675	NM_177266	ENSMUSG00000021666	Gfm2	6530419G12Rik|A930009M04Rik|EF-G2mt|EFG2|MST027|RRF2mt	G elongation factor, mitochondrial 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25228851-1	chr12	25228351	25229351	+	565.0	f1_balb.idr	Intergenic	Intergenic	99677.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.0	0.0	0.0	0.0	0.0	5.0
Merged-chr1-185352550-1	chr1	185352050	185353050	+	565.0	f1_c57bl6.idr	intron (NM_001347210, intron 8 of 9)	PB1|SINE|Alu	-10494.0	NM_029735	107508.0	Mm.154511	NM_029735	ENSMUSG00000026615	Eprs	2410081F06Rik|3010002K18Rik|C79379|Qprs	glutamyl-prolyl-tRNA synthetase	protein-coding	0.5	1.0	5.0	7.5	2.5	2.0
Merged-chr8-71520687-1	chr8	71520187	71521187	+	565.0	f1_balb.idr	Intergenic	Intergenic	-8918.0	NM_032398	84094.0	Mm.260768	NM_032398	ENSMUSG00000034845	Plvap	MECA32|Pv1	plasmalemma vesicle associated protein	protein-coding	3.0	6.0	5.5	0.0	3.0	4.5
Merged-chr2-70969335-2	chr2	70968835	70969835	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 7 of 9)	(CA)n|Simple_repeat|Simple_repeat	49039.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-110659831-1	chr1	110659331	110660331	+	565.0	f1_balb.idr	Intergenic	MMERVK9C_I-int|LTR|ERVK	317762.0	NM_001356415	227485.0	Mm.322070	NM_001081386	ENSMUSG00000047216	Cdh19	-	cadherin 19, type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23661584-1	chr17	23661084	23662084	+	565.0	f1_balb.idr	intron (NM_153784, intron 1 of 9)	intron (NM_153784, intron 1 of 9)	1078.0	NM_153784	212733.0	Mm.59997	NM_153784	ENSMUSG00000043782	Bicdl2	BICDR-2|Ccdc64b	BICD family like cargo adaptor 2	protein-coding	2.0	0.0	0.5	0.0	3.5	0.0
Merged-chr5-142325227-2	chr5	142324727	142325727	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-76270.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-90605751-2	chr6	90605251	90606251	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027868, intron 1 of 10)	MER44B|DNA|TcMar-Tigger	871.0	NM_027868	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139648244-1	chr7	139647744	139648744	+	565.0	f1_balb.idr	intron (NM_001302546, intron 22 of 58)	intron (NM_001302546, intron 22 of 58)	35571.0	NM_001302546	212124.0	Mm.425507	NM_177212	ENSMUSG00000049571	Cfap46	9330101J02Rik|E030019B06Rik|Gm170|Ttc40	cilia and flagella associated protein 46	protein-coding	1.0	0.0	0.0	0.0	1.5	0.0
Merged-chr6-72132982-1	chr6	72132482	72133482	+	565.0	f0_balb.idr	intron (NM_001035228, intron 3 of 6)	intron (NM_001035228, intron 3 of 6)	-9785.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121970157-1	chr5	121969657	121970657	+	565.0	f0_balb.idr	intron (NM_007804, intron 2 of 22)	intron (NM_007804, intron 2 of 22)	77668.0	NM_007804	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124861712-2	chr5	124861216	124862216	+	565.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081750)	promoter-TSS (NM_001081750)	505.0	NM_144819	215707.0	Mm.389693	NM_144819	ENSMUSG00000037979	Ccdc92	AW050178|D5Bwg0834e	coiled-coil domain containing 92	protein-coding	0.0	0.0	0.0	4.0	0.0	0.0
Merged-chr7-119895281-1	chr7	119894781	119895781	+	565.0	f1_c57bl6.idr	promoter-TSS (NM_001285959)	promoter-TSS (NM_001285959)	177.0	NM_173408	233805.0	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93782896-2	chr2	93782396	93783396	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355076, intron 7 of 10)	intron (NM_001355076, intron 7 of 10)	39672.0	NM_010163	14043.0	Mm.4336	NM_010163	ENSMUSG00000027198	Ext2	AI893565	exostoses (multiple) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52620263-2	chr13	52619763	52620763	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 3 of 13)	intron (NM_011518, intron 3 of 13)	23381.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36736602-1	chr18	36736102	36737102	+	565.0	f1_c57bl6.idr	intron (NM_028036, intron 2 of 11)	L2b|LINE|L2	1532.0	NM_028036	71983.0	Mm.135188	NM_028036	ENSMUSG00000006850	Tmco6	2410015B03Rik	transmembrane and coiled-coil domains 6	protein-coding	5.0	7.5	2.0	3.5	12.0	7.0
Merged-chr2-119047681-1	chr2	119047181	119048181	+	565.0	f1_balb.idr	intron (NM_029617, intron 1 of 23)	intron (NM_029617, intron 1 of 23)	562.0	NM_029617	76464.0	Mm.202518	NM_029617	ENSMUSG00000027326	Knl1	2310043D08Rik|5730505K17Rik|Casc5	kinetochore scaffold 1	protein-coding	59.0	76.0	75.0	53.0	109.5	48.0
Merged-chr10-40137383-2	chr10	40136883	40137883	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	4871.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34292533-2	chr6	34292033	34293033	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24910.0	NR_037965	626009.0	Mm.451	NR_028277		Gm6644	Akr1b3p|EG626009	Akr1b3 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100606189-2	chr7	100605689	100606689	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_003559, intron 1 of 7)	(TC)n|Simple_repeat|Simple_repeat	-1397.0	NM_024287	19346.0	Mm.28650	NM_024287	ENSMUSG00000030704	Rab6a	2610028L11Rik|AA419671|Rab6	RAB6A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-46175554-2	chr9	46175054	46176054	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 4 of 24)	ORR1B2|LTR|ERVL-MaLR	-53076.0	NM_009692	11806.0	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.0	2.5	0.0	0.0	1.5	0.0
Merged-chr14-121044350-2	chr14	121043850	121044850	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134082, intron 1 of 26)	MTE2b|LTR|ERVL-MaLR	8776.0	NM_134082	223254.0	Mm.223980	NM_134082	ENSMUSG00000025555	Farp1	AW228844|BC030329|Cdep	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60709756-2	chr13	60709256	60710256	+	564.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	intron (NM_134062, intron 3 of 26)	76608.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0.0	0.0	1.5	6.5	6.5	1.0
Merged-chr10-45859297-3	chr10	45858703	45859703	+	564.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51499.0	NR_040624	320363.0	Mm.123343	NR_040624	ENSMUSG00000110874	D030045P18Rik	-	RIKEN cDNA D030045P18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81000457-2	chr15	80999957	81000957	+	564.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357669, intron 1 of 20)	intron (NM_001357669, intron 1 of 20)	22692.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57033229-2	chr17	57032710	57033710	+	564.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346527, intron 7 of 7)	intron (NM_001346527, intron 7 of 7)	-1703.0	NM_010613	16549.0	Mm.34296	NM_010613	ENSMUSG00000007670	Khsrp	6330409F21Rik|Fbp2|Fubp2|Ksrp	KH-type splicing regulatory protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136414488-2	chr1	136413988	136414988	+	564.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026500)	promoter-TSS (NM_026500)	-783.0	NM_026500	67997.0	Mm.385462	NM_026500	ENSMUSG00000026404	Ddx59	1210002B07Rik|4833411G06Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86669635-2	chr1	86669135	86670135	+	564.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010933, intron 2 of 2)	CpG	938.0	NM_010933	18159.0	Mm.12802	NM_010933	ENSMUSG00000026241	Nppc	CNP|lbab	natriuretic peptide type C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108232225-3	chr6	108231725	108232725	+	564.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 2 of 61)	intron (NM_010585, intron 2 of 61)	19129.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	0.0	3.5	2.5	4.0	0.0	0.0
Merged-chr6-9983650-2	chr6	9983150	9984150	+	564.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	990728.0	NR_033776	57866.0	Mm.4397	NR_033776		AA545190	-	EST AA545190	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-97474892-2	chr16	97474392	97475392	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020622, intron 7 of 7)	intron (NM_020622, intron 7 of 7)	-11986.0	NR_003520	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-60769102-2	chr16	60768602	60769602	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-163571.0	NM_007938	13840.0	Mm.455790	NM_007938	ENSMUSG00000055540	Epha6	Ehk2|Hek12|m-ehk2	Eph receptor A6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-41614431-2	chr7	41613931	41614931	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-19100.0	NM_001360675	67607.0	Mm.384626	NM_023363	ENSMUSG00000074165	Zfp788	2810426N06Rik|AI256342|AI605193	zinc finger protein 788	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70697532-2	chr11	70697032	70698032	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252485, intron 1 of 7)	B2_Mm1t|SINE|B2	2623.0	NM_001252482	103844.0	Mm.101581	NM_213729	ENSMUSG00000057054	Inca1	AI842396	inhibitor of CDK, cyclin A1 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65490981-2	chr9	65490481	65491481	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28280.0	NM_001357813	27965.0	Mm.272475	NM_138584	ENSMUSG00000032388	Spg21	ACP33|BM-019|C78576|D9Wsu18e|GL010|MAST	SPG21, maspardin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34202655-2	chr7	34202155	34203155	+	564.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008155, exon 17 of 18)	exon (NM_008155, exon 17 of 18)	-5985.0	NM_001360710	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53107056-2	chr4	53106556	53107556	+	564.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013454, exon 7 of 50)	exon (NM_013454, exon 7 of 50)	52839.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51854988-2	chr11	51854488	51855488	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357588, intron 1 of 12)	intron (NM_001357588, intron 1 of 12)	2493.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25628097-2	chr7	25627597	25628597	+	564.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_146184, exon 1 of 1)	5' UTR (NM_146184, exon 1 of 1)	473.0	NM_146184	232984.0	Mm.192369	NM_146184	ENSMUSG00000059479	B3gnt8	B3galt7|B7galt7|BC025206	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-75719427-2	chr3	75718927	75719927	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-63696.0	NR_040539	69193.0	Mm.374088	NR_040539	ENSMUSG00000099370	Platr10	2410007B07Rik	pluripotency associated transcript 10	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-91852963-2	chr4	91852463	91853463	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	294258.0	NM_027034	69314.0	Mm.55891	NM_027034	ENSMUSG00000028533	Izumo3	1700011H22Rik	IZUMO family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147517889-2	chr4	147517389	147518389	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35388.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-116728438-2	chr10	116727938	116728938	+	564.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131036)	promoter-TSS (NR_131036)	739.0	NR_045345	72286.0	Mm.396207	NR_045345	ENSMUSG00000100198	1700030O20Rik	-	RIKEN cDNA 1700030O20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-133527810-2	chr3	133527310	133528310	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040400, intron 1 of 10)	B1_Mur2|SINE|Alu	16580.0	NM_001040400	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7022827-2	chr19	7022327	7023327	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016737, intron 10 of 13)	B2_Mm2|SINE|B2	-3358.0	NM_001362399	108101.0	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70319640-2	chr11	70319140	70320140	+	564.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_145684, exon 8 of 14)	exon (NM_145684, exon 8 of 14)	2890.0	NM_145684	11685.0	Mm.274093	NM_145684	ENSMUSG00000018907	Alox12e	12-LOX|8-LOX|AW259591|Alox12-ps1|Alox12-ps2|Aloxe|e-LOX1	arachidonate lipoxygenase, epidermal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-15046470-2	chr9	15045970	15046970	+	564.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019482)	promoter-TSS (NM_019482)	-992.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96311224-2	chr11	96310724	96311724	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4314.0	NR_131758	75395.0	Mm.440014	NR_131758	ENSMUSG00000085645	Hoxb5os	0610040B09Rik|AV302770|Hoxb5/6as	homeobox B5 and homeobox B6, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75513028-2	chr11	75512528	75513528	+	564.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004157)	promoter-TSS (NM_001004157)	-513.0	NM_001004157	380713.0	Mm.10486	NM_001004157	ENSMUSG00000038188	Scarf1	AA986099|SREC|SREC-I|mKIAA0149	scavenger receptor class F, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132091639-2	chr4	132091139	132092139	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16326.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29252900-2	chr2	29252400	29253400	+	564.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029460)	promoter-TSS (NR_029460)	93.0	NR_029460	76220.0	Mm.330108	NR_029460	ENSMUSG00000079499	6530402F18Rik	mKIAA1857	RIKEN cDNA 6530402F18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167683038-2	chr2	167682538	167683538	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-5877.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78431693-2	chr10	78431193	78432193	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3106.0	NR_105837	102465221.0		NR_105837	ENSMUSG00000098932	Mir6410	Gm27916|mmu-mir-6410	microRNA 6410	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13597020-2	chr8	13596520	13597520	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 5 of 23)	intron (NM_009025, intron 5 of 23)	-34559.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65949929-2	chr17	65949429	65950429	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023053, intron 1 of 4)	RSINE1|SINE|B4	1258.0	NM_023053	65960.0	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62550758-2	chr10	62550258	62551258	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-23313.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-113432182-2	chr2	113431682	113432682	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010230, intron 3 of 19)	intron (NM_010230, intron 3 of 19)	-8882.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13434258-2	chr16	13433758	13434758	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15265.0	NR_030549	100124432.0		NR_030549	ENSMUSG00000076972	Mir193b	Mir193|Mirn193b|mir-193b	microRNA 193b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120111019-2	chr11	120110519	120111519	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361699, intron 11 of 16)	intron (NM_001361699, intron 11 of 16)	12085.0	NM_001110242	208501.0	Mm.46699	NM_001110242	ENSMUSG00000078572	Ndufaf8	1810043H04Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-45495844-2	chr5	45495344	45496344	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024434, intron 2 of 12)	intron (NM_024434, intron 2 of 12)	2470.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-35500172-2	chr6	35499672	35500672	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	39716.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113670565-2	chr6	113670065	113671065	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 3 of 11)	intron (NM_001113553, intron 3 of 11)	-26485.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46829728-2	chr17	46829228	46830228	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001100452, intron 3 of 10)	intron (NM_001100452, intron 3 of 10)	1685.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-88769863-2	chr5	88769363	88770363	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007832, intron 2 of 6)	B3|SINE|B2	4850.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-35133456-2	chr4	35132956	35133956	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	RMER1B|Other|Other	-18599.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114668611-2	chr5	114668111	114669111	+	564.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019821)	TTS (NM_019821)	-10190.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0.0	2.5	5.0	1.5	2.0	0.0
Merged-chr2-126677122-2	chr2	126676622	126677622	+	564.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271470)	promoter-TSS (NM_001271470)	-785.0	NM_001271470	14391.0	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117785413-2	chr10	117784913	117785913	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134010, intron 4 of 27)	B3|SINE|B2	7292.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32794100-2	chr19	32793600	32794600	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 3 of 8)	intron (NM_008960, intron 3 of 8)	36523.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	5.5	6.5	8.0	6.5	7.5	8.5
Merged-chr16-76365240-2	chr16	76364740	76365740	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	7809.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92105953-2	chr16	92105453	92106453	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080456, intron 2 of 2)	intron (NM_080456, intron 2 of 2)	47617.0	NM_080456	121022.0	Mm.217354	NM_080456	ENSMUSG00000039680	Mrps6	AW046321	mitochondrial ribosomal protein S6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142459209-2	chr7	142458709	142459709	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1603.0	NM_001271510	16985.0	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	1.5	0.0	1.0	0.0	0.0	1.0
Merged-chr14-73241495-1	chr14	73240995	73241995	+	564.5	f0_balb.idr	intron (NM_009029, intron 17 of 26)	intron (NM_009029, intron 17 of 26)	3604.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100962563-2	chr7	100962055	100963055	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	MIR3|SINE|MIR	1811.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	9.5	7.0	19.5	7.5	15.0	13.0
Merged-chr8-40033451-1	chr8	40032951	40033951	+	564.5	f1_balb.idr	Intergenic	L1Md_F2|LINE|L1	253502.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	0.0	0.5	0.0	0.0	0.0	2.0
Merged-chr5-92086198-2	chr5	92085698	92086698	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-2454.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111447746-2	chr12	111447246	111448246	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009396, intron 3 of 11)	intron (NM_009396, intron 3 of 11)	5085.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-80783507-2	chr1	80783007	80784007	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24954.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21621111-1	chr14	21620611	21621611	+	564.5	f0_balb.idr	intron (NM_017479, intron 5 of 16)	intron (NM_017479, intron 5 of 16)	93465.0	NM_001013826	435391.0	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-33195802-2	chr14	33195302	33196302	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10736.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120097085-2	chr11	120096585	120097585	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183137, intron 2 of 12)	intron (NM_183137, intron 2 of 12)	1646.0	NM_183137	78777.0	Mm.23672	NM_183137	ENSMUSG00000025377	Tepsin	2410002I01Rik|Enthd2	TEPSIN, adaptor related protein complex 4 accessory protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125130069-2	chr6	125129569	125130569	+	564.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145979, exon 39 of 39)	3' UTR (NM_145979, exon 39 of 39)	-1814.0	NM_138747	110109.0	Mm.29203	NM_138747	ENSMUSG00000038279	Nop2	120kDa|A530002O17|Nol1	NOP2 nucleolar protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58669036-2	chr16	58668536	58669536	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-1172.0	NM_007757	12892.0	Mm.291519	NM_007757	ENSMUSG00000022742	Cpox	CPX|Cpo|HCP|cac|nct	coproporphyrinogen oxidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95806201-2	chr15	95805701	95806701	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	MTE2a|LTR|ERVL-MaLR	15358.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4913617-2	chr12	4913117	4914117	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-3736.0	NM_001099628	320817.0	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-106794996-2	chr6	106794496	106795496	+	564.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_175357, exon 3 of 11)	exon (NM_175357, exon 3 of 11)	5091.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81847345-2	chr15	81846823	81847823	+	564.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_020507)	TTS (NM_020507)	11003.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	33.0	32.0	58.5	17.0	38.5	36.5
Merged-chr14-75163331-2	chr14	75162831	75163831	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	Lx8|LINE|L1	26906.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-6695012-2	chr8	6694512	6695512	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-1589725.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr7-127945241-2	chr7	127944741	127945741	+	564.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001319147, exon 4 of 15)	exon (NM_001319147, exon 4 of 15)	1484.0	NM_001319147	77613.0	Mm.334253	NM_001081374	ENSMUSG00000070371	Prss36	C330007D15Rik	protease, serine 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-18578585-2	chr19	18578085	18579085	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53228.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	3.0	6.5	4.5	0.5	10.5	0.5
Merged-chr14-69731488-2	chr14	69730988	69731988	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134078, intron 1 of 9)	MIRc|SINE|MIR	1082.0	NM_134078	105513.0	Mm.159637	NM_134078	ENSMUSG00000034190	Chmp7	4930596K11Rik|6330407G04Rik|AI450338|AW550775	charged multivesicular body protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-42840802-2	chr17	42840309	42841309	+	564.5	f0_balb.idr|f1_balb.idr	intron (NM_009847, intron 3 of 17)	intron (NM_009847, intron 3 of 17)	35615.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	7.0	4.5	8.5	16.5	9.0	21.0
Merged-chr4-95385871-2	chr4	95385371	95386371	+	564.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-171636.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57338612-2	chr17	57338112	57339112	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20074.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134870741-2	chr4	134870241	134871241	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011270, intron 1 of 9)	intron (NM_011270, intron 1 of 9)	6205.0	NM_011270	19746.0	Mm.195461	NM_011270	ENSMUSG00000028825	Rhd	Rh|Rhced|Rhl1	Rh blood group, D antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-157465324-2	chr1	157464824	157465824	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033284, intron 5 of 9)	intron (NM_001033284, intron 5 of 9)	6756.0	NM_001356419	226527.0	Mm.215960	NM_001033284	ENSMUSG00000033488	Cryzl2	-	crystallin zeta like 2	protein-coding	0.0	9.0	2.5	0.0	4.0	2.5
Merged-chr19-55923080-2	chr19	55922580	55923580	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142920, intron 11 of 11)	Tigger5|DNA|TcMar-Tigger	27759.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72495369-2	chr8	72494817	72495817	+	564.416626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027485, exon 3 of 3)	3' UTR (NM_027485, exon 3 of 3)	-2703.0	NM_177766	270066.0	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	3.0	0.0	3.5	0.0	0.0	2.0
Merged-chr2-170247908-3	chr2	170247429	170248429	+	564.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105254.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35103693-3	chr9	35103168	35104168	+	564.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-13060.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55085174-3	chr14	55084656	55085656	+	564.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039198, intron 1 of 9)	intron (NM_001039198, intron 1 of 9)	6892.0	NM_001039198	239102.0	Mm.441113	NM_001039198	ENSMUSG00000040721	Zfhx2	ZFH-5	zinc finger homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55854548-3	chr14	55854042	55855042	+	564.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040072, intron 1 of 7)	intron (NM_001040072, intron 1 of 7)	427.0	NM_001040072	277154.0	Mm.319347	NM_001040072	ENSMUSG00000075592	Nynrin	AA409373|C80530|mKIAA1305	NYN domain and retroviral integrase containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118490074-2	chr7	118489574	118490574	+	564.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033380, exon 1 of 1)	exon (NM_001033380, exon 1 of 1)	1901.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	19.0	23.0	42.5	14.0	43.0	31.5
Merged-chr12-55785432-2	chr12	55784932	55785932	+	564.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003719, intron 6 of 39)	MER74A|LTR|ERVL	36084.0	NM_019994	56784.0	Mm.292180	NM_019994	ENSMUSG00000021027	Ralgapa1	2310003F20Rik|4930400K19Rik|AI563624|GRIPE|Garnl1|Tulip1|mKIAA0884	Ral GTPase activating protein, alpha subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13007350-2	chr10	13006850	13007850	+	564.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-1100.0	NM_175102	66125.0	Mm.29743	NM_175102	ENSMUSG00000078348	Sf3b5	10kDa|1110005L13Rik|AU043053|Sf3b10	splicing factor 3b, subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13006782-2	chr10	13006282	13007282	+	564.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-1668.0	NM_175102	66125.0	Mm.29743	NM_175102	ENSMUSG00000078348	Sf3b5	10kDa|1110005L13Rik|AU043053|Sf3b10	splicing factor 3b, subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-49393566-2	chr2	49393063	49394063	+	564.166626	f0_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-57923.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75905066-2	chr18	75904563	75905563	+	564.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_145356, intron 2 of 4)	intron (NM_145356, intron 2 of 4)	84885.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	53.0	109.0	57.0	1.5	5.5	8.0
Merged-chr15-84944979-2	chr15	84944479	84945479	+	564.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033273)	TTS (NM_001033273)	6644.0	NR_037206	100526461.0		NR_037206	ENSMUSG00000080441	Mir1249	mir-1249|mmu-mir-1249	microRNA 1249	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97358229-1	chr7	97357729	97358729	+	564.0	f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-13388.0	NM_199035	381903.0	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	0.0	4.5	2.5	2.0	4.5	5.0
Merged-chr8-13411757-2	chr8	13411257	13412257	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011881, intron 4 of 6)	intron (NM_011881, intron 4 of 6)	6676.0	NM_011881	24013.0	Mm.257501	NM_011881	ENSMUSG00000031450	Grk1	Gprk1|Rhok|Rk	G protein-coupled receptor kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160725563-2	chr2	160725063	160726063	+	564.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25B|LTR|ERVK	-5747.0	NM_021280	18803.0	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70461625-2	chr11	70461125	70462125	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348337, intron 2 of 13)	MER102b|DNA|hAT-Charlie	-1641.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5821168-2	chr18	5820668	5821668	+	564.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	228521.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	0.5	1.0	0.0	2.0	0.5	4.0
Merged-chr19-46314215-2	chr19	46313715	46314715	+	564.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347454, exon 15 of 18)	exon (NM_001347454, exon 15 of 18)	8285.0	NM_001177370	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191279201-2	chr1	191278701	191279701	+	564.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38917.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0.0	0.0	8.0	3.0	15.0	2.5
Merged-chr2-149102536-1	chr2	149102036	149103036	+	564.0	f1_c57bl6.idr	Intergenic	L1Md_F|LINE|L1	-227024.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	0.0	2.0	2.0	0.0	0.0	0.0
Merged-chr16-91394242-2	chr16	91393742	91394742	+	564.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001110498)	TTS (NM_001110498)	-11993.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-51268696-2	chr2	51268196	51269196	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040636, intron 1 of 2)	intron (NR_040636, intron 1 of 2)	26865.0	NR_040636	329404.0	Mm.417725	NR_040636	ENSMUSG00000086349	Gm13497	A730015I17	predicted gene 13497	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83748673-1	chr6	83748173	83749173	+	564.0	f1_balb.idr	intron (NM_134157, intron 1 of 13)	intron (NM_134157, intron 1 of 13)	5656.0	NM_134157	110935.0	Mm.220823	NM_134157	ENSMUSG00000006269	Atp6v1b1	AW208839|Atp6b1|D630003L15|D630030L16Rik|D630039P21Rik|Vpp-3|Vpp3	ATPase, H+ transporting, lysosomal V1 subunit B1	protein-coding	3.0	6.0	0.0	5.0	1.0	0.0
Merged-chr7-35380351-2	chr7	35379851	35380851	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027897, intron 10 of 14)	PB1D10|SINE|Alu	16416.0	NM_178643	101831.0	Mm.389855	NM_178643	ENSMUSG00000030493	Faap24	AW124591|AW538696|C230052I12Rik	Fanconi anemia core complex associated protein 24	protein-coding	1.5	0.0	0.0	0.0	1.0	1.0
Merged-chr1-138160501-1	chr1	138160001	138161001	+	564.0	f0_balb.idr	intron (NM_001268286, intron 2 of 28)	Lx9|LINE|L1	14625.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-68826430-1	chr2	68825930	68826930	+	564.0	f0_balb.idr	Intergenic	Lx5c|LINE|L1	-35011.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167714015-2	chr2	167713515	167714515	+	564.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22838.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70548695-2	chr8	70548165	70549165	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	8990.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	0.5	0.0	0.5	8.0	2.0	2.0
Merged-chr4-132433033-2	chr4	132432533	132433533	+	564.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10587.0	NM_175306	100169.0	Mm.158361	NM_175306	ENSMUSG00000066043	Phactr4	3110001B12Rik|AI527228|AW495572|C330013F19Rik|N28169|mKIAA4120	phosphatase and actin regulator 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-38151524-2	chr13	38151024	38152024	+	564.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_023842, exon 1 of 24)	5' UTR (NM_023842, exon 1 of 24)	230.0	NM_023842	109620.0	Mm.355327	NM_023842	ENSMUSG00000054889	Dsp	2300002E22Rik|5730453H04Rik|AA407887|AA407888|AW109828|DP|rul	desmoplakin	protein-coding	0.5	0.0	1.0	0.0	0.0	1.0
Merged-chr15-99002321-2	chr15	99001821	99002821	+	564.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D-int|LTR|ERVL-MaLR	16356.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99971424-2	chr15	99970924	99971924	+	564.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_028124)	TTS (NR_028124)	-1356.0	NM_001024526	207214.0	Mm.28811	NM_001024526	ENSMUSG00000023025	Larp4	DXErtd793|DXErtd793e	La ribonucleoprotein domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83663200-1	chr11	83662700	83663700	+	564.0	f0_balb.idr	intron (NM_013652, intron 1 of 2)	B2_Mm2|SINE|B2	616.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158118747-2	chr2	158118247	158119247	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 12 of 12)	intron (NM_009373, intron 12 of 12)	-26950.0	NR_040609	72340.0	Mm.443395	NR_040609	ENSMUSG00000100860	2010009K17Rik	-	RIKEN cDNA 2010009K17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-72181443-1	chr16	72180943	72181943	+	564.0	f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	52884.0	NR_131116	319533.0	Mm.373754	NR_131115		8030451O07Rik	-	RIKEN cDNA 8030451O07 gene	ncRNA	0.0	2.5	0.0	4.0	0.0	0.0
Merged-chr19-55903338-2	chr19	55902838	55903838	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142924, intron 1 of 11)	intron (NM_001142924, intron 1 of 11)	8017.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50186593-2	chr17	50186093	50187093	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 1 of 9)	intron (NM_181397, intron 1 of 9)	3904.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30512589-1	chr16	30512089	30513089	+	564.0	f0_balb.idr	3' UTR (NM_172614, exon 10 of 10)	3' UTR (NM_172614, exon 10 of 10)	37989.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	10.5	20.0	27.0	2.0	14.5	16.5
Merged-chr6-83518840-1	chr6	83518340	83519340	+	564.0	f1_c57bl6.idr	intron (NM_009610, intron 7 of 8)	ORR1B1|LTR|ERVL-MaLR	-11871.0	NM_001162521	27369.0	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	0.0	11.0	6.0	0.0	1.5	1.0
Merged-chr3-117311172-1	chr3	117310672	117311672	+	564.0	f0_balb.idr	Intergenic	Lx7|LINE|L1	49704.0	NM_177664	229791.0	Mm.140138	NM_177664	ENSMUSG00000044667	Plppr4	A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455	phospholipid phosphatase related 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70148195-1	chr12	70147695	70148695	+	564.0	f0_balb.idr	Intergenic	Intergenic	-5976.0	NM_001195033	100504285.0	Mm.291105	NM_001195033	ENSMUSG00000090121	Abhd12b	Gm804	abhydrolase domain containing 12B	protein-coding	0.0	0.0	5.5	0.0	0.0	5.5
Merged-chr14-45678363-1	chr14	45677863	45678863	+	564.0	f1_balb.idr	Intergenic	Intergenic	-20220.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	7.0	29.0	6.0	7.0	7.0	14.5
Merged-chr17-28284620-2	chr17	28284120	28285120	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 2 of 7)	intron (NM_011145, intron 2 of 7)	-10998.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-19716545-2	chr4	19716045	19717045	+	564.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_151541)	TTS (NR_151541)	3341.0	NR_151541	102632246.0		NR_151541		Gm12354	-	predicted gene 12354	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48406806-2	chr17	48406306	48407306	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110832, intron 1 of 9)	intron (NM_001110832, intron 1 of 9)	3014.0	NM_001110832	18044.0	Mm.4929	NM_010913	ENSMUSG00000023994	Nfya	AA407810|Cbf-b|SEZ-10|SEZ10	nuclear transcription factor-Y alpha	protein-coding	3.5	5.0	0.0	6.0	8.0	5.0
Merged-chr1-84444852-1	chr1	84444352	84445352	+	564.0	f0_balb.idr	intron (NM_152915, intron 8 of 12)	intron (NM_152915, intron 8 of 12)	-160207.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128697334-2	chr10	128696834	128697834	+	564.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_016756)	TTS (NM_016756)	-1066.0	NM_177411	19344.0	Mm.12815	NM_011229	ENSMUSG00000000711	Rab5b	C030027M18Rik	RAB5B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-82957158-1	chr10	82956658	82957658	+	564.0	f1_balb.idr	Intergenic	ORR1B1-int|LTR|ERVL-MaLR	-28339.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	0.0	11.5	1.0	0.0	0.5	2.5
Merged-chr3-14881196-1	chr3	14880696	14881696	+	564.0	f0_balb.idr	Intergenic	Intergenic	-5073.0	NM_001357334	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	16.5	0.0	5.0	7.5	1.5	3.5
Merged-chr16-64899239-1	chr16	64898739	64899739	+	564.0	f0_balb.idr	Intergenic	Intergenic	47238.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-34615307-1	chr14	34614807	34615807	+	564.0	f0_balb.idr	Intergenic	Intergenic	-15165.0	NM_013887	30044.0	Mm.272060	NM_013887	ENSMUSG00000021799	Opn4	1110007J02Rik|Gm533	opsin 4 (melanopsin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-66849286-2	chr4	66848786	66849786	+	564.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	21735.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69457281-1	chr12	69456781	69457781	+	564.0	f0_balb.idr	Intergenic	Intergenic	18269.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	0.0	1.0	4.0	11.5	2.0	1.5
Merged-chr8-31215359-2	chr8	31214858	31215858	+	564.0	f0_balb.idr|f1_balb.idr	intron (NM_001286425, intron 3 of 3)	intron (NM_001286425, intron 3 of 3)	28027.0	NM_001286425	171167.0	Mm.334477	NM_134161	ENSMUSG00000046152	Fut10	fuc-TX|fut10A	fucosyltransferase 10	protein-coding	4.5	0.0	0.0	4.5	0.0	1.5
Merged-chr17-23975765-1	chr17	23975265	23976265	+	564.0	f1_c57bl6.idr	promoter-TSS (NM_013921)	promoter-TSS (NM_013921)	-535.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	0.0	8.5	10.0	1.5	10.0	0.0
Merged-chr13-61774088-1	chr13	61773588	61774588	+	564.0	f0_c57.idr	intron (NR_028430, intron 1 of 3)	intron (NR_028430, intron 1 of 3)	2508.0	NR_028430	432812.0	Mm.317358	NR_028430		BC052688	-	cDNA sequence BC052688	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29399753-2	chr6	29399253	29400253	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145574, intron 3 of 15)	intron (NM_145574, intron 3 of 15)	827.0	NM_001201378	232664.0	Mm.251303	NM_145574	ENSMUSG00000029769	Ccdc136	4921511K06Rik|BC006583	coiled-coil domain containing 136	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123208209-1	chr8	123207709	123208709	+	564.0	f1_c57bl6.idr	intron (NM_145606, intron 3 of 6)	intron (NM_145606, intron 3 of 6)	4579.0	NM_145606	234852.0	Mm.41596	NM_145606	ENSMUSG00000000743	Chmp1a	2900018H07Rik|Pcoln3	charged multivesicular body protein 1A	protein-coding	1.0	0.0	1.5	1.0	2.0	0.5
Merged-chr11-75279162-2	chr11	75278662	75279662	+	564.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69221.0	NM_001164223	68275.0	Mm.102574	NM_026653	ENSMUSG00000000751	Rpa1	5031405K23Rik|70kDa|AA589576|AW557552|RF-A|RP-A|Rpa	replication protein A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-42054371-2	chr13	42053871	42054871	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 1 of 8)	intron (NM_007772, intron 1 of 8)	2350.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-94295352-1	chr2	94294852	94295852	+	564.0	f1_balb.idr	Intergenic	Intergenic	-33953.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-89135595-2	chr2	89135096	89136096	+	564.0	f0_balb.idr|f1_balb.idr	Intergenic	Lx3C|LINE|L1	-9867.0	NM_001011860	258177.0	Mm.377369	NM_001011860	ENSMUSG00000075101	Olfr1222	MOR233-14	olfactory receptor 1222	protein-coding	2.5	0.0	0.0	0.0	2.0	0.0
Merged-chr13-34343483-2	chr13	34342983	34343983	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 1 of 10)	intron (NM_001033167, intron 1 of 10)	1699.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	1.0	11.0	2.0	0.0	8.0	1.0
Merged-chr6-97298259-1	chr6	97297759	97298759	+	564.0	f1_c57bl6.idr	intron (NM_145148, intron 20 of 23)	intron (NM_145148, intron 20 of 23)	-45479.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	4.0	11.0	7.5	20.5	1.5	6.0
Merged-chr3-98030728-2	chr3	98030228	98031228	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	17190.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-44117047-2	chr4	44116547	44117547	+	564.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-4846.0	NR_040414	623796.0	Mm.490409	NR_040414	ENSMUSG00000084274	Gm12504	-	prothymosin alpha pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-14579796-1	chr8	14579296	14580296	+	564.0	f1_c57bl6.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-308740.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	2.0	3.0	2.5	1.0	1.0	0.0
Merged-chr18-40267194-2	chr18	40266694	40267694	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026135, intron 1 of 1)	intron (NM_026135, intron 1 of 1)	8833.0	NM_026135	383348.0	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-60746356-1	chr1	60745856	60746856	+	564.0	f0_balb.idr	promoter-TSS (NM_007642)	promoter-TSS (NM_007642)	-32.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	0.0	3.0	0.0	0.0	2.5	0.0
Merged-chr2-173274898-1	chr2	173274398	173275398	+	564.0	f0_balb.idr	intron (NM_022995, intron 1 of 3)	intron (NM_022995, intron 1 of 3)	1635.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr5-34591847-2	chr5	34591347	34592347	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024458, intron 1 of 14)	intron (NM_001024458, intron 1 of 14)	17696.0	NR_106111	102466999.0		NR_106111	ENSMUSG00000099082	Mir7036b	Gm27625|mmu-mir-7036b	microRNA 7036b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72522096-1	chr8	72521596	72522596	+	564.0	f1_balb.idr	intron (NM_027485, intron 1 of 2)	RMER6A|LTR|ERVK	26214.0	NM_027485	70625.0	Mm.235885	NM_027485	ENSMUSG00000045248	Med26	5730493L18Rik|AI414941|AW495270|Crsp7	mediator complex subunit 26	protein-coding	3.0	29.0	5.0	23.0	24.0	12.5
Merged-chr15-27706817-1	chr15	27706317	27707317	+	564.0	f0_balb.idr	Intergenic	Intergenic	-25275.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114613951-2	chr5	114613451	114614451	+	564.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001004180)	TTS (NM_001004180)	44470.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111892209-2	chr12	111891709	111892709	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011625, intron 1 of 16)	RMER1A|Other|Other	15846.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109375595-2	chr11	109375095	109376095	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010303, intron 2 of 3)	intron (NM_010303, intron 2 of 3)	-11941.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr1-59484765-2	chr1	59484265	59485265	+	564.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008057, exon 1 of 1)	3' UTR (NM_008057, exon 1 of 1)	2618.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	3.0	0.0	1.0	3.0	0.0	2.5
Merged-chr10-61417744-2	chr10	61417244	61418244	+	564.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013611)	promoter-TSS (NM_013611)	-228.0	NM_013611	18119.0	Mm.57195	NM_013611	ENSMUSG00000037171	Nodal	Tg.413d	nodal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117313221-2	chr11	117312721	117313721	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-18494.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-25082373-1	chr18	25081873	25082873	+	564.0	f1_balb.idr	intron (NM_001289654, intron 14 of 24)	intron (NM_001289654, intron 14 of 24)	83592.0	NM_001142697	66648.0	Mm.263189	NM_001004361	ENSMUSG00000024269	Tpgs2	5730437P09Rik|5730494M16Rik|AI666318|Pgs2	tubulin polyglutamylase complex subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-18957301-2	chr11	18956801	18957801	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010789, intron 7 of 11)	intron (NM_010789, intron 7 of 11)	61668.0	NM_001193271	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9884247-2	chr13	9883747	9884747	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 4 of 4)	L1_Mm|LINE|L1	-118926.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-41084618-2	chr3	41084118	41085118	+	564.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1572.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102938270-2	chr2	102937770	102938770	+	564.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-36605.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155775078-2	chr2	155774578	155775578	+	564.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010808)	promoter-TSS (NM_010808)	-264.0	NM_010808	17391.0	Mm.389325	NM_010808	ENSMUSG00000027612	Mmp24	AU040325|MMP-21|MT5-MMP|MT5MMP|MTMMP5	matrix metallopeptidase 24	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr5-143567942-1	chr5	143567442	143568442	+	564.0	f0_balb.idr	Intergenic	Intergenic	19236.0	NM_026050	67238.0	Mm.383219	NM_026050	ENSMUSG00000083012	Fam220a	1500026F15Rik|2810453I06Rik|AW047776|Acpin1|Sipar	family with sequence similarity 220, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-24244476-2	chr14	24243976	24244976	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163513, intron 1 of 31)	intron (NM_001163513, intron 1 of 31)	1444.0	NM_001163513	71228.0	Mm.68971	NM_027726	ENSMUSG00000021782	Dlg5	4933429D20Rik|T25557|mKIAA0583	discs large MAGUK scaffold protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-101896018-1	chr2	101895518	101896518	+	564.0	f0_balb.idr	intron (NM_029635, intron 2 of 5)	LTR16E2|LTR|ERVL	9756.0	NM_029635	76501.0	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29409276-2	chr2	29408776	29409776	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290490, intron 3 of 5)	intron (NM_001290490, intron 3 of 5)	30762.0	NM_001290490	68975.0	Mm.330109	NM_026896	ENSMUSG00000026799	Med27	1500015J03Rik|2310042P07Rik|AA682045|Crsp8|D2Ertd434e	mediator complex subunit 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111014550-2	chr10	111014007	111015007	+	564.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4441.0	NM_172554	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	5.0	5.0	3.5	3.5	5.0	2.0
Merged-chr13-103917348-2	chr13	103916848	103917848	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005868, intron 1 of 26)	intron (NM_001005868, intron 1 of 26)	3238.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40708824-1	chr19	40708324	40709324	+	564.0	f0_balb.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	49054.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	6.5	18.0	4.5	14.0	13.0	4.5
Merged-chr7-78897087-2	chr7	78896587	78897587	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360709, intron 1 of 3)	intron (NM_001360709, intron 1 of 3)	1029.0	NM_001360709	68048.0	Mm.34109	NM_026531	ENSMUSG00000030609	Aen	2700083B06Rik|Isg20l1	apoptosis enhancing nuclease	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-80160766-1	chr9	80160266	80161266	+	564.0	f1_c57bl6.idr	Intergenic	Intergenic	-4268.0	NM_001039546	17920.0	Mm.4040	NM_008662	ENSMUSG00000033577	Myo6	BC029719|Tlc|sv	myosin VI	protein-coding	0.0	1.5	0.0	0.0	1.5	0.0
Merged-chr19-44297638-2	chr19	44297138	44298138	+	564.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_009128, intron 2 of 5)	intron (NM_009128, intron 2 of 5)	3962.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	0.5	12.5	2.0	10.0	5.5	0.0
Merged-chr17-30216887-1	chr17	30216387	30217387	+	564.0	f0_c57.idr	3' UTR (NM_027060, exon 11 of 11)	3' UTR (NM_027060, exon 11 of 11)	179293.0	NR_030688	623169.0	Mm.440508	NR_030688		Gm6402	EG623169	ribosomal protein S17 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15829371-1	chr17	15828871	15829871	+	564.0	f0_balb.idr	Intergenic	Intergenic	-2785.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45168805-1	chr7	45168305	45169305	+	564.0	f1_c57bl6.idr	exon (NM_182993, exon 2 of 12)	exon (NM_182993, exon 2 of 12)	-4498.0	NR_106022	102465638.0		NR_106022	ENSMUSG00000106470	Mir7055	mmu-mir-7055	microRNA 7055	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70001257-2	chr11	70000757	70001757	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007888, intron 1 of 14)	intron (NM_007888, intron 1 of 14)	631.0	NM_007888	13543.0	Mm.5114	NM_007888	ENSMUSG00000020888	Dvl2	-	dishevelled segment polarity protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-109423836-1	chr11	109423336	109424336	+	564.0	f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-2110.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	4.0	3.0	10.5	9.5	1.0	2.5
Merged-chr1-39425177-2	chr1	39424677	39425677	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018775, intron 2 of 19)	intron (NM_018775, intron 2 of 19)	53570.0	NM_018775	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123443359-2	chr5	123442859	123443859	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133917, intron 6 of 16)	intron (NM_133917, intron 6 of 16)	38742.0	NM_029594	76399.0	Mm.75049	NM_029594	ENSMUSG00000029437	Il31	1700013B14Rik	interleukin 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119961839-2	chr9	119961339	119962339	+	564.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028735, exon 20 of 29)	exon (NM_028735, exon 20 of 29)	21184.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117468832-2	chr8	117468332	117469332	+	564.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9567.0	NR_106046	102465653.0		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-41059264-1	chr9	41058764	41059764	+	564.0	f0_balb.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	20242.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	4.5	32.5	25.0	10.0	27.0	19.5
Merged-chr9-107519587-1	chr9	107519087	107520087	+	564.0	f1_balb.idr	intron (NM_001174047, intron 23 of 38)	intron (NM_001174047, intron 23 of 38)	-14358.0	NM_019704	56395.0	Mm.260153	NM_019704	ENSMUSG00000010045	Tmem115	C78915|Pl6|Pp6	transmembrane protein 115	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr5-125017415-2	chr5	125016915	125017915	+	564.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001253904, exon 48 of 48)	3' UTR (NM_001253904, exon 48 of 48)	13940.0	NM_028443	73121.0	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	0.0	0.0	2.0	1.5	2.0	4.0
Merged-chr3-126609363-1	chr3	126608863	126609863	+	564.0	f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	12412.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	4.5	8.5	10.0	4.0	5.5	4.0
Merged-chr11-54086156-2	chr11	54085656	54086656	+	564.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEg|LINE|L1	-14768.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23606896-2	chr16	23606396	23607396	+	564.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B3A_MM|LTR|ERVK	-3023.0	NM_023386	67775.0	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44562450-1	chr11	44561950	44562950	+	564.0	f1_balb.idr	intron (NM_028862, intron 10 of 10)	intron (NM_028862, intron 10 of 10)	-23867.0	NR_126460	75389.0	Mm.261421	NR_126460	ENSMUSG00000086501	4930597A21Rik	-	RIKEN cDNA 4930597A21 gene	ncRNA	0.0	0.0	7.5	0.0	1.0	0.5
Merged-chr8-85075321-2	chr8	85074821	85075821	+	564.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001039514)	TTS (NM_001039514)	3564.0	NM_001039514	330817.0	Mm.193086	NM_201408	ENSMUSG00000060038	Dhps	Dhs	deoxyhypusine synthase	protein-coding	4.0	4.0	2.0	0.5	8.0	0.0
Merged-chr1-75488602-2	chr1	75488102	75489102	+	564.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178884, exon 15 of 20)	exon (NM_178884, exon 15 of 20)	9070.0	NM_177056	319998.0	Mm.44401	NM_177056	ENSMUSG00000051703	Tmem198	A230078I05Rik|Tmem198-1|Tmem198a	transmembrane protein 198	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134984216-1	chr6	134983716	134984716	+	564.0	f1_c57bl6.idr	exon (NM_001109914, exon 2 of 2)	exon (NM_001109914, exon 2 of 2)	2215.0	NM_001109914	381823.0	Mm.296104	NM_001109914	ENSMUSG00000090698	Apold1	Gm1075	apolipoprotein L domain containing 1	protein-coding	6.5	0.0	6.0	6.5	8.0	5.5
Merged-chr1-155081901-2	chr1	155081401	155082401	+	564.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151545, exon 1 of 7)	non-coding (NR_151545, exon 1 of 7)	1363.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-6690224-1	chr13	6689724	6690724	+	564.0	f0_balb.idr	Intergenic	RMER1A|Other|Other	-41453.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93482823-2	chr2	93482323	93483323	+	564.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33A|LTR|ERVL	-19873.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0.5	2.5	2.0	3.5	0.0	1.0
Merged-chr16-4864616-2	chr16	4864116	4865116	+	564.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_030192, exon 14 of 16)	exon (NM_030192, exon 14 of 16)	15235.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129637667-1	chr4	129637167	129638167	+	564.0	f1_balb.idr	intron (NM_001005506, intron 2 of 9)	B1_Mus1|SINE|Alu	3138.0	NM_001005506	109658.0	Mm.268863	NM_001005506	ENSMUSG00000053841	Txlna	2600010N21Rik|AI425952|AW209241|Il14|Txln	taxilin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55209414-2	chr11	55208914	55209914	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153139, intron 1 of 10)	intron (NM_153139, intron 1 of 10)	5074.0	NM_153139	215335.0	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114652993-2	chr5	114652493	114653493	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022017, intron 1 of 15)	intron (NM_022017, intron 1 of 15)	5428.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0.0	5.0	3.0	1.5	4.5	5.5
Merged-chr5-48867190-1	chr5	48866690	48867690	+	564.0	f1_c57bl6.idr	intron (NM_001199244, intron 1 of 7)	MERVL_2A-int|LTR|ERVL	22367.0	NM_030265	80334.0	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	0.0	8.5	0.0	3.0	0.0	0.0
Merged-chr6-114840074-1	chr6	114839574	114840574	+	564.0	f0_balb.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	81747.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119487343-2	chr13	119486843	119487843	+	564.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039244)	promoter-TSS (NM_001039244)	-696.0	NM_001039244	633640.0	Mm.46679	NM_001039244	ENSMUSG00000074634	Tmem267	EG633640|Gm7120	transmembrane protein 267	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85697099-2	chr12	85696599	85697599	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016767, intron 2 of 2)	B3|SINE|B2	10379.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28362039-2	chr7	28361539	28362539	+	564.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001083912, exon 18 of 19)	exon (NM_001083912, exon 18 of 19)	10499.0	NR_028129	100302567.0		NR_028129		AF357399	MBI-142	snoRNA AF357399	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59192495-1	chr11	59191995	59192995	+	564.0	f1_balb.idr	promoter-TSS (NM_008193)	promoter-TSS (NM_008193)	-543.0	NM_008193	14923.0	Mm.3624	NM_008193	ENSMUSG00000020444	Guk1	AA409738|AL033299|AL033300|AV026611|Gmk|Guk-1	guanylate kinase 1	protein-coding	80.0	90.5	49.5	31.5	73.0	34.5
Merged-chr14-67887756-1	chr14	67887256	67888256	+	564.0	f1_balb.idr	intron (NM_177780, intron 1 of 51)	(GGGA)n|Simple_repeat|Simple_repeat	-28011.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	30.0	112.0	71.5	30.0	70.0	31.0
Merged-chr13-112578312-1	chr13	112577812	112578812	+	564.0	f1_c57bl6.idr	intron (NM_139299, intron 1 of 16)	LSU-rRNA_Hsa|rRNA|rRNA	2350.0	NM_139299	218624.0	Mm.380801	NM_139299	ENSMUSG00000050377	Il31ra	CRL3|GLM-R|GPL|Glmr|NR10	interleukin 31 receptor A	protein-coding	6.0	4.0	4.5	0.0	1.0	3.0
Merged-chr5-103849981-2	chr5	103849481	103850481	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133919, intron 19 of 19)	intron (NM_133919, intron 19 of 19)	61278.0	NM_001359987	246293.0	Mm.179871	NM_178741	ENSMUSG00000029312	Klhl8	2310001P09Rik|D5Ertd431e	kelch-like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108350565-2	chr9	108350065	108351065	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011678, intron 1 of 21)	intron (NM_011678, intron 1 of 21)	2734.0	NM_011678	22258.0	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45008320-2	chr7	45007820	45008820	+	564.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001008422, exon 7 of 11)	exon (NM_001008422, exon 7 of 11)	4167.0	NR_106021	102466218.0		NR_106021	ENSMUSG00000098839	Mir7054	Gm27557|mmu-mir-7054	microRNA 7054	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77845062-2	chr11	77844562	77845562	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011586, intron 27 of 39)	intron (NM_011586, intron 27 of 39)	43764.0	NM_001291215	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119082059-2	chr11	119081559	119082559	+	564.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007625, exon 5 of 5)	exon (NM_007625, exon 5 of 5)	4178.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45038267-2	chr2	45037767	45038767	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-15090.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147747648-1	chr5	147747148	147748148	+	564.0	f1_balb.idr	Intergenic	RSINE1|SINE|B4	-21660.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	0.5	0.0	0.0	0.0	0.0	0.5
Merged-chr7-29276958-2	chr7	29276458	29277458	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011464, intron 1 of 6)	intron (NM_011464, intron 1 of 6)	5019.0	NM_001082548	20733.0	Mm.295230	NM_011464	ENSMUSG00000074227	Spint2	AL024025|C76321|HAI-2	serine protease inhibitor, Kunitz type 2	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr13-45089259-1	chr13	45088759	45089759	+	564.0	f0_c57.idr	Intergenic	Intergenic	-87163.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46783640-2	chr17	46783140	46784140	+	564.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025433)	promoter-TSS (NM_025433)	-984.0	NM_025433	66229.0	Mm.218533	NM_025433	ENSMUSG00000063888	Rpl7l1	1500016H10Rik	ribosomal protein L7-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-106797594-1	chr6	106797094	106798094	+	564.0	f0_balb.idr	intron (NM_175357, intron 1 of 10)	MER20|DNA|hAT-Charlie	2493.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140710408-2	chr5	140709908	140710908	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_074085, intron 3 of 12)	intron (NR_074085, intron 3 of 12)	5342.0	NM_001276287	231841.0	Mm.271932	NM_172724	ENSMUSG00000000148	Brat1	AA881470|Baat1	BRCA1-associated ATM activator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90209413-2	chr9	90208913	90209913	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 11 of 12)	intron (NM_194334, intron 11 of 12)	46435.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0.0	3.5	1.0	0.0	1.0	0.0
Merged-chr5-24598158-2	chr5	24597658	24598658	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025891, intron 2 of 12)	intron (NM_025891, intron 2 of 12)	3844.0	NM_025891	66993.0	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-63857379-1	chr16	63856879	63857879	+	564.0	f1_balb.idr	intron (NM_010140, intron 1 of 16)	intron (NM_010140, intron 1 of 16)	6778.0	NM_010140	13837.0	Mm.1977	NM_010140	ENSMUSG00000052504	Epha3	AW492086|Cek4|EK4|ETK1|End3|Hek|Hek4|Mek4|Tyro4	Eph receptor A3	protein-coding	0.0	0.0	2.5	0.0	0.0	1.0
Merged-chr12-95692186-1	chr12	95691686	95692686	+	564.0	f0_balb.idr	promoter-TSS (NM_201518)	promoter-TSS (NM_201518)	-40.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70246425-2	chr11	70245925	70246925	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007440, intron 10 of 13)	B1_Mm|SINE|Alu	-6573.0	NM_173742	52898.0	Mm.29852	NM_173742	ENSMUSG00000093989	Rnasek	2310033H11Rik|AA571397|D11Bwg0434e	ribonuclease, RNase K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70724461-1	chr8	70723961	70724961	+	564.0	f1_balb.idr	intron (NM_201607, intron 1 of 16)	intron (NM_201607, intron 1 of 16)	397.0	NM_201607	110385.0	Mm.255180	NM_201607	ENSMUSG00000031842	Pde4c	Dpde1|E130301F19Rik|dunce	phosphodiesterase 4C, cAMP specific	protein-coding	0.0	0.0	1.0	0.0	6.0	0.5
Merged-chr6-38682804-2	chr6	38682304	38683304	+	564.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19735.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116457918-1	chr11	116457418	116458418	+	564.0	f1_c57bl6.idr	Intergenic	Intergenic	-3571.0	NM_001033267	217341.0	Mm.387352	NM_001033267	ENSMUSG00000070331	Qrich2	Gm66	glutamine rich 2	protein-coding	0.0	0.0	0.0	2.5	0.0	0.0
Merged-chr17-23660445-1	chr17	23659945	23660945	+	564.0	f1_c57bl6.idr	promoter-TSS (NM_153784)	promoter-TSS (NM_153784)	-61.0	NM_153784	212733.0	Mm.59997	NM_153784	ENSMUSG00000043782	Bicdl2	BICDR-2|Ccdc64b	BICD family like cargo adaptor 2	protein-coding	0.0	10.5	2.0	2.0	19.5	0.0
Merged-chr5-111177771-2	chr5	111177271	111178271	+	563.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	-152926.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-66175154-2	chr14	66174668	66175668	+	563.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 12 of 30)	intron (NM_001162366, intron 12 of 30)	34208.0	NM_144803	110902.0	Mm.57350	NM_144803	ENSMUSG00000022041	Chrna2	Acra-2|Acra2|BC011490	cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal)	protein-coding	0.0	1.5	2.0	0.0	7.0	1.5
Merged-chr17-29070147-2	chr17	29069647	29070647	+	563.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_036469, intron 1 of 1)	RSINE1|SINE|B4	8979.0	NR_036469	100504267.0	Mm.438550	NR_036469	ENSMUSG00000085912	Trp53cor1	Gm16197|linc-p21|lincRNA-p21	tumor protein p53 pathway corepressor 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103422378-2	chr11	103421878	103422878	+	563.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9714.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	0.0	0.0	0.5	0.5	0.0	1.0
Merged-chr6-125218761-1	chr6	125218261	125219261	+	563.666687	f0_c57.idr	intron (NM_001080557, intron 2 of 3)	intron (NM_001080557, intron 2 of 3)	3180.0	NM_009496	22317.0	Mm.32321	NM_009496	ENSMUSG00000030337	Vamp1	Syb-1|Syb1|VAMP-1|lew	vesicle-associated membrane protein 1	protein-coding	0.5	5.5	3.0	0.0	1.0	0.0
Merged-chr2-22789812-3	chr2	22789307	22790307	+	563.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	L1MB7|LINE|L1	15480.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91731915-3	chr16	91731421	91732421	+	563.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	2550.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8003233-2	chr10	8002733	8003733	+	563.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47110.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73134759-3	chr15	73134252	73135252	+	563.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 3 of 18)	MTD|LTR|ERVL-MaLR	44340.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76422572-2	chr16	76422072	76423072	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48745.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95627282-2	chr3	95626782	95627782	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001026212, intron 2 of 2)	B1F1|SINE|Alu	2302.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-58073471-2	chr19	58072986	58073986	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181415, intron 28 of 28)	intron (NM_181415, intron 28 of 28)	22319.0	NR_049196	100885835.0		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	2.0	0.0	5.0	9.0	1.5	6.5
Merged-chr11-86814370-2	chr11	86813870	86814870	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	-6710.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17656628-2	chr10	17656128	17657128	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-66600.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35092662-1	chr7	35092162	35093162	+	563.5	f0_balb.idr	Intergenic	PB1D10|SINE|Alu	-26631.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	4.5	2.5	0.0	0.0	4.5	1.5
Merged-chr10-128554886-2	chr10	128554386	128555386	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5718.0	NM_018860	67945.0	Mm.290786	NM_018860	ENSMUSG00000093674	Rpl41	1810055P16Rik|2210411K19Rik	ribosomal protein L41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98321973-2	chr7	98321473	98322473	+	563.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360615)	promoter-TSS (NM_001360615)	-765.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-4906761-2	chr1	4906261	4907261	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21B|LTR|ERV1	48433.0	NM_001159751	21399.0	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27198438-2	chr3	27197938	27198938	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	B3|SINE|B2	15434.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118126144-2	chr11	118125644	118126644	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167746, intron 3 of 80)	intron (NM_001167746, intron 3 of 80)	3075.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41355112-2	chr4	41354612	41355612	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355508, intron 1 of 6)	intron (NM_001355508, intron 1 of 6)	3149.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30593399-1	chr7	30592899	30593899	+	563.5	f0_balb.idr	promoter-TSS (NM_021397)	promoter-TSS (NM_021397)	-457.0	NM_021397	58206.0	Mm.116789	NM_021397	ENSMUSG00000006310	Zbtb32	4930524C15Rik|FAXF|FAZF|PLZP|Rog|Tzfp	zinc finger and BTB domain containing 32	protein-coding	3.5	12.5	5.5	5.5	12.5	3.0
Merged-chr14-56884499-2	chr14	56883999	56884999	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2104.0	NM_177627	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-53438501-2	chr10	53438001	53439001	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28619.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29483133-2	chr19	29482633	29483633	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38854.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-77419240-2	chr6	77418740	77419740	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145732, intron 8 of 18)	intron (NM_145732, intron 8 of 18)	-36765.0	NR_045141	70753.0	Mm.490700	NR_045141	ENSMUSG00000108077	6330415B21Rik	-	RIKEN cDNA 6330415B21 gene	ncRNA	0.0	0.0	0.0	2.0	14.0	1.5
Merged-chr2-172477071-3	chr2	172476593	172477593	+	563.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4539.0	NM_029608	76426.0	Mm.46148	NM_029608	ENSMUSG00000027505	Fam209	1700029J11Rik	family with sequence similarity 209	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119107855-2	chr9	119107355	119108355	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177117, intron 2 of 36)	intron (NM_177117, intron 2 of 36)	5377.0	NM_177117	320256.0	Mm.110648	NM_177117	ENSMUSG00000038060	Dlec1	D630005C06Rik	deleted in lung and esophageal cancer 1	protein-coding	0.0	0.0	0.5	3.0	0.0	0.0
Merged-chr9-90248312-2	chr9	90247812	90248812	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 2 of 12)	(CCA)n|Simple_repeat|Simple_repeat	22457.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-103465121-2	chr5	103464621	103465621	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011204, intron 2 of 47)	intron (NM_011204, intron 2 of 47)	39929.0	NM_011204	19249.0	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28734622-2	chr17	28734122	28735122	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168508, intron 8 of 11)	intron (NM_001168508, intron 8 of 11)	-34695.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36552588-2	chr5	36552088	36553088	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	-21965.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	3.0	3.0	6.0	6.0	6.5	1.5
Merged-chr10-128545651-2	chr10	128545151	128546151	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134003, intron 2 of 2)	intron (NM_134003, intron 2 of 2)	2093.0	NM_134003	103284.0	Mm.68289	NM_134003	ENSMUSG00000039810	Zc3h10	AI790326	zinc finger CCCH type containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25778548-2	chr7	25778048	25779048	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 5 of 19)	intron (NM_009465, intron 5 of 19)	10185.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-85209008-2	chr13	85208508	85209508	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023243, intron 7 of 8)	intron (NM_023243, intron 7 of 8)	19623.0	NM_023243	66671.0	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	3.5	4.0	0.0	3.0	6.5	0.0
Merged-chr10-81613061-2	chr10	81612561	81613561	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	6753.0	NR_030677	268319.0	Mm.131825	NM_001033363	ENSMUSG00000074862	BC025920	-	zinc finger protein pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-83244801-2	chr2	83244301	83245301	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-399777.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117914231-2	chr4	117913731	117914731	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146152, intron 1 of 19)	intron (NM_146152, intron 1 of 19)	768.0	NM_146152	230673.0	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8011756-2	chr10	8011256	8012256	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-55633.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67849386-2	chr5	67848886	67849886	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1955.0	NM_001038999	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90076041-2	chr3	90075541	90076541	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022314, intron 2 of 8)	intron (NM_022314, intron 2 of 8)	3390.0	NM_022314	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr3-77438418-2	chr3	77437918	77438918	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	1362835.0	NM_001253719	213262.0	Mm.379337	NM_178673	ENSMUSG00000034098	Fstl5	9130207J01Rik	follistatin-like 5	protein-coding	0.0	0.0	0.0	4.0	1.0	0.0
Merged-chr15-59553918-2	chr15	59553418	59554418	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-94736.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4921606-2	chr7	4921106	4922106	+	563.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201355)	promoter-TSS (NM_201355)	-645.0	NM_201355	269854.0	Mm.42652	NM_201355	ENSMUSG00000035285	Nat14	BC047219	N-acetyltransferase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107710175-2	chr3	107709675	107710675	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCa|LINE|L1	-13615.0	NM_145542	229709.0	Mm.220328	NM_145542	ENSMUSG00000027893	Ahcyl1	1110034F20Rik|AA409031|AA414901|Ahcy-rs3|DCAL|Irbit	S-adenosylhomocysteine hydrolase-like 1	protein-coding	1.0	1.0	0.0	1.0	1.0	1.0
Merged-chr8-104349518-2	chr8	104349018	104350018	+	563.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153582, exon 4 of 4)	3' UTR (NM_153582, exon 4 of 4)	8924.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-69869165-2	chr5	69868665	69869665	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur1|LINE|L1	-276861.0	NM_001038015	67980.0	Mm.33830	NM_027681	ENSMUSG00000029209	Gnpda2	4921523I18Rik|4933412A11Rik|BB189630|GNPDA|Gnp2|Sb52|mKIAA4008	glucosamine-6-phosphate deaminase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-64349423-2	chr7	64348923	64349923	+	563.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_177893, exon 12 of 14)	exon (NM_177893, exon 12 of 14)	24672.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-35482185-2	chr10	35481685	35482685	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44A|LTR|ERVK	998785.0	NM_010237	14302.0	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25400463-2	chr14	25399963	25400963	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58722.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55229316-2	chr19	55228816	55229816	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 6 of 20)	intron (NM_001081076, intron 6 of 20)	11920.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-12233698-1	chr12	12233198	12234198	+	563.5	f1_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-28441.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	2.0	2.5	0.0	1.5	0.0	2.5
Merged-chr4-12232691-2	chr4	12232191	12233191	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	-60676.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-49831990-2	chr18	49831490	49832490	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1007.0	NM_001081371	240283.0	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70099221-2	chr14	70098721	70099721	+	563.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360404)	promoter-TSS (NM_001360404)	-872.0	NM_021328	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167473451-2	chr2	167472951	167473951	+	563.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_148929, exon 15 of 17)	exon (NM_148929, exon 15 of 17)	-19194.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-88123297-2	chr16	88122797	88123797	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146072, intron 1 of 16)	intron (NM_146072, intron 1 of 16)	166961.0	NM_146072	14805.0	Mm.5134	NM_010348	ENSMUSG00000022935	Grik1	A830007B11Rik|D16Ium24|D16Ium24e|GluK1|GluK5|Glur-5|Glur5|Glurbeta1	glutamate receptor, ionotropic, kainate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4537623-2	chr16	4537123	4538123	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14548.0	NM_001361474	106393.0	Mm.35811	NM_175347	ENSMUSG00000022519	Srl	9830004M20Rik|AW108387|sar	sarcalumenin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97996596-2	chr11	97996096	97997096	+	563.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152188)	promoter-TSS (NR_152188)	-423.0	NR_152188	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-20119854-2	chr8	20119354	20120354	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	177578.0	NR_030708	547150.0	Mm.359054	NR_030708	ENSMUSG00000071796	6820431F20Rik	-	cadherin 11 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30587318-2	chr7	30586818	30587818	+	563.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001290573, exon 2 of 37)	exon (NM_001290573, exon 2 of 37)	1408.0	NM_001290573	75410.0	Mm.168688	NM_029274	ENSMUSG00000006307	Kmt2b	2610014H22Rik|Mll2|Wbp7|mKIAA0304	lysine (K)-specific methyltransferase 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24910311-2	chr5	24909811	24910811	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 4 of 15)	B3A|SINE|B2	-1802.0	NM_001170555	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173185503-2	chr2	173185003	173186003	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32430.0	NM_011044	18534.0	Mm.266867	NM_011044	ENSMUSG00000027513	Pck1	AI265463|PEPCK|PEPCK-C|Pck-1	phosphoenolpyruvate carboxykinase 1, cytosolic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107871701-2	chr9	107871201	107872201	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029169, intron 1 of 20)	intron (NM_029169, intron 1 of 20)	1118.0	NM_011251	19654.0	Mm.139926	NM_011251	ENSMUSG00000032582	Rbm6	4930506F14Rik|Def-3|NY-LU-12|g16|mKIAA4015	RNA binding motif protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-11991918-2	chr15	11991418	11992418	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011294, intron 2 of 4)	intron (NM_011294, intron 2 of 4)	4089.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62849096-2	chr4	62848596	62849596	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-116478.0	NM_028326	72701.0	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120069351-2	chr1	120068851	120069851	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019432, intron 1 of 1)	intron (NM_019432, intron 1 of 1)	4429.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	0.0	7.0	0.0	0.0	6.5	5.0
Merged-chr7-19558759-2	chr7	19558259	19559259	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199149, intron 1 of 12)	intron (NM_199149, intron 1 of 12)	3639.0	NM_199149	232947.0	Mm.219662	NM_199149	ENSMUSG00000051403	Ppp1r37	Gm158|Lrrc68	protein phosphatase 1, regulatory subunit 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-67760701-1	chr14	67760201	67761201	+	563.5	f0_c57.idr	intron (NM_177780, intron 48 of 51)	intron (NM_177780, intron 48 of 51)	15520.0	NR_133010	14714.0	Mm.358309	NM_008145	ENSMUSG00000015812	Gnrh1	Gnrh|Gnrh2|LHRH|Lhrh1|Lnrh|hpg	gonadotropin releasing hormone 1	protein-coding	13.5	2.5	1.5	0.0	3.5	0.0
Merged-chr7-19286914-2	chr7	19286414	19287414	+	563.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013648, exon 3 of 10)	exon (NM_013648, exon 3 of 10)	-4155.0	NM_001025364	20167.0	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108073415-2	chr3	108072915	108073915	+	563.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001346665)	TTS (NM_001346665)	11987.0	NM_001346665	109674.0	Mm.274335	NM_028779	ENSMUSG00000027889	Ampd2	1200014F01Rik|AI552571|Ampd-2|m4521Dajl	adenosine monophosphate deaminase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-98328232-2	chr5	98327732	98328732	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1072.0	NM_001024614	75784.0	Mm.443240	NM_001024614	ENSMUSG00000057816	1700007G11Rik	4930428O21Rik	RIKEN cDNA 1700007G11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-59697621-2	chr13	59697121	59698121	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3520.0	NM_183290	70900.0	Mm.73124	NM_183290	ENSMUSG00000049902	4921517D22Rik	-	RIKEN cDNA 4921517D22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80685296-2	chr10	80684796	80685796	+	563.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172457)	TTS (NM_172457)	-9003.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54642853-1	chr14	54642353	54643353	+	563.333313	f1_balb.idr	TTS (NR_105913)	TTS (NR_105913)	257.0	NR_105913	102466771.0		NR_105913	ENSMUSG00000106169	Mir6948	mmu-mir-6948	microRNA 6948	ncRNA	3.5	2.5	0.5	5.0	0.0	0.5
Merged-chr5-72950436-3	chr5	72949918	72950918	+	563.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153567, intron 3 of 8)	Lx8|LINE|L1	36056.0	NM_153567	75991.0	Mm.121285	NM_153567	ENSMUSG00000036087	Slain2	5033405K12Rik|8030444K12Rik|AI596370	SLAIN motif family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120335625-3	chr8	120335116	120336116	+	563.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107386.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120761908-2	chr5	120761408	120762408	+	563.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_145226, intron 8 of 15)	intron (NM_145226, intron 8 of 15)	-12060.0	NM_001347448	246728.0	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-46119273-3	chr9	46118787	46119787	+	563.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	106467.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136531886-2	chr5	136531386	136532386	+	563.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291238, intron 1 of 22)	intron (NM_001291238, intron 1 of 22)	34095.0	NM_001291239	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149339948-1	chr4	149339448	149340448	+	563.0	f0_balb.idr	intron (NM_022022, intron 22 of 26)	intron (NM_022022, intron 22 of 26)	5309.0	NR_131918	74310.0	Mm.440455	NR_131918	ENSMUSG00000085286	Ube4bos3	1700121F15Rik	ubiquitination factor E4B, opposite strand 3	ncRNA	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr15-96465219-2	chr15	96464719	96465719	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4376.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120084932-2	chr2	120084432	120085432	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51499.0	NM_145378	211429.0	Mm.41467	NM_145378	ENSMUSG00000098488	Pla2g4b	A030011C02Rik|Gm1013|cPLA2-beta	phospholipase A2, group IVB (cytosolic)	protein-coding	0.0	0.0	2.0	0.0	0.0	0.5
Merged-chr5-66128115-1	chr5	66127615	66128615	+	563.0	f1_balb.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	22863.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	25.5	21.5	39.5	19.0	17.5	24.0
Merged-chr18-56737526-1	chr18	56737026	56738026	+	563.0	f0_balb.idr	intron (NM_010721, intron 5 of 10)	intron (NM_010721, intron 5 of 10)	29713.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54247792-2	chr13	54247292	54248292	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55659.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131279859-2	chr1	131279359	131280359	+	563.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019777)	promoter-TSS (NM_019777)	-296.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0.0	16.5	4.5	2.0	8.5	5.5
Merged-chr11-54087270-2	chr11	54086770	54087770	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13654.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117839582-1	chr10	117839082	117840082	+	563.0	f0_balb.idr	intron (NM_024457, intron 1 of 7)	Charlie1a|DNA|hAT-Charlie	6392.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46461571-2	chr18	46461071	46462071	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4245.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51279793-2	chr3	51279293	51280293	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 4 of 9)	intron (NM_023502, intron 4 of 9)	-2279.0	NM_001291062	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31001085-1	chr14	31000585	31001585	+	563.0	f0_balb.idr	promoter-TSS (NM_029626)	promoter-TSS (NM_029626)	-308.0	NM_001165930	76485.0	Mm.8766	NM_029626	ENSMUSG00000021916	Glt8d1	2410004H05Rik|5430414N14Rik|AI450005	glycosyltransferase 8 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170287106-1	chr1	170286606	170287606	+	563.0	f1_balb.idr	TTS (NM_012009)	TTS (NM_012009)	9788.0	NR_153837	26904.0	Mm.57009	NM_012009	ENSMUSG00000102418	Sh2d1b1	EAT-2|EAT-2A|Eat2|Eat2a|Sh2d1b	SH2 domain containing 1B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-82987250-1	chr6	82986750	82987750	+	563.0	f1_c57bl6.idr	intron (NM_033079, intron 4 of 9)	intron (NM_033079, intron 4 of 9)	40328.0	NM_033079	110958.0	Mm.100652	NM_033079	ENSMUSG00000030041	M1ap	D6Mm5e	meiosis 1 associated protein	protein-coding	0.5	0.0	1.0	0.0	0.0	3.0
Merged-chr10-19629091-1	chr10	19628591	19629591	+	563.0	f1_balb.idr	intron (NM_178258, intron 3 of 4)	L2b|LINE|L2	7063.0	NM_178258	237310.0	Mm.331979	NM_178258	ENSMUSG00000039760	Il22ra2	CRF2-10|CRF2-s1|CRF2X|Il-22bp	interleukin 22 receptor, alpha 2	protein-coding	2.0	3.5	7.0	7.0	0.0	0.0
Merged-chr7-139299220-1	chr7	139298720	139299720	+	563.0	f1_c57bl6.idr	Intergenic	Intergenic	50738.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11190232-2	chr4	11189732	11190732	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1119.0	NM_001037134	12448.0	Mm.35867	NM_009830	ENSMUSG00000028212	Ccne2	-	cyclin E2	protein-coding	0.0	2.0	2.0	1.5	0.0	2.5
Merged-chr10-18070868-1	chr10	18070368	18071368	+	563.0	f0_balb.idr	intron (NM_009048, intron 1 of 19)	intron (NM_009048, intron 1 of 19)	14928.0	NM_001111065	19707.0	Mm.4479	NM_009048	ENSMUSG00000019854	Reps1	BB161292	RalBP1 associated Eps domain containing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-94859148-2	chr17	94858648	94859648	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5770.0	NM_001024731	100044193.0		NM_001024731	ENSMUSG00000095193	Gm20939	-	predicted gene, 20939	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88068477-2	chr17	88067977	88068977	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-3186.0	NM_001081034	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107113851-1	chr3	107113351	107114351	+	563.0	f1_balb.idr	3' UTR (NM_008417, exon 3 of 3)	3' UTR (NM_008417, exon 3 of 3)	12284.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	2.0	0.0	4.5	0.0	3.5	4.5
Merged-chr5-65248046-1	chr5	65247546	65248546	+	563.0	f1_c57bl6.idr	intron (NM_001359879, intron 28 of 35)	B4A|SINE|B4	48350.0	NM_153391	213081.0	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58455773-2	chr13	58455273	58456273	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52430.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-85183125-1	chr11	85182625	85183625	+	563.0	f0_balb.idr	Intergenic	Intergenic	12029.0	NM_028589	73634.0	Mm.48850	NM_028589	ENSMUSG00000018479	1700125H20Rik	-	RIKEN cDNA 1700125H20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119512702-2	chr8	119512202	119513202	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167910, intron 21 of 22)	intron (NM_001167910, intron 21 of 22)	-11004.0	NM_001009950	234788.0	Mm.302096	NM_001009950	ENSMUSG00000034224	Slc38a8	Gm587	solute carrier family 38, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132298883-2	chr4	132298383	132299383	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	4473.0	NM_001081651	242681.0	Mm.331927	NM_001081651	ENSMUSG00000089687	Rab42	9530096D07Rik|Rab42-ps	RAB42, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-51619712-2	chr8	51619212	51620212	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-736899.0	NR_151738	330767.0	Mm.246790	NR_151738	ENSMUSG00000110013	1190028D05Rik	-	RIKEN cDNA 1190028D05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110230301-1	chr5	110229801	110230801	+	563.0	f1_balb.idr	promoter-TSS (NM_001253814)	promoter-TSS (NM_001253814)	-703.0	NM_001253814	71782.0	Mm.288442	NM_027922	ENSMUSG00000029501	Ankle2	1110001J12Rik|AI661024|D5Ertd585e	ankyrin repeat and LEM domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114592223-1	chr5	114591723	114592723	+	563.0	f1_c57bl6.idr	intron (NM_001004180, intron 1 of 2)	intron (NM_001004180, intron 1 of 2)	23972.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	2.5	0.5	1.0	2.0	0.0	7.0
Merged-chr10-86107565-3	chr10	86107062	86108062	+	563.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038024, intron 2 of 2)	intron (NR_038024, intron 2 of 2)	11708.0	NR_038024	78170.0	Mm.444790	NR_038024	ENSMUSG00000112493	4930486F22Rik	-	RIKEN cDNA 4930486F22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-85530728-2	chr7	85530228	85531228	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38360.0	NM_001105183	670940.0	Mm.469908	NM_001105183	ENSMUSG00000090806	Vmn2r70	EG620835	vomeronasal 2, receptor 70	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43760632-2	chr4	43760132	43761132	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8773.0	NR_040667	319973.0	Mm.233955	NR_040667		A630077J23Rik	-	RIKEN cDNA A630077J23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-46798312-2	chr13	46797812	46798812	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010617, intron 20 of 37)	intron (NM_010617, intron 20 of 37)	-70463.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	1.5	0.0	2.0	0.5	0.0	2.0
Merged-chr8-84967660-1	chr8	84967160	84968160	+	563.0	f1_c57bl6.idr	Intergenic	Intergenic	-1649.0	NM_027187	69724.0	Mm.182470	NM_027187	ENSMUSG00000052926	Rnaseh2a	2400006P09Rik|RNASEHI|RNHIA|RNHL	ribonuclease H2, large subunit	protein-coding	9.0	39.5	16.5	7.0	27.0	10.0
Merged-chr12-100776663-1	chr12	100776163	100777163	+	563.0	f0_c57.idr	Intergenic	Intergenic	-2394.0	NM_001361023	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	13.5	27.0	24.5	14.0	37.5	26.0
Merged-chr4-26292635-1	chr4	26292135	26293135	+	563.0	f1_balb.idr	Intergenic	Lx3C|LINE|L1	54017.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120571357-1	chr8	120570857	120571857	+	563.0	f1_balb.idr	intron (NM_001145896, intron 9 of 15)	intron (NM_001145896, intron 9 of 15)	17718.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108845618-2	chr9	108845118	108846118	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359572, intron 29 of 35)	intron (NM_001359572, intron 29 of 35)	-8425.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-23661394-1	chr5	23660894	23661894	+	563.0	f0_balb.idr	intron (NM_001359174, intron 2 of 16)	intron (NM_001359174, intron 2 of 16)	14573.0	NM_001359174	20817.0	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	0.0	12.0	3.5	9.0	1.5	1.0
Merged-chr14-33042460-2	chr14	33041960	33042960	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146022, intron 38 of 58)	intron (NM_001146022, intron 38 of 58)	51078.0	NM_026253	67580.0	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3081728-2	chr4	3081228	3082228	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CACAG)n|Simple_repeat|Simple_repeat	-90355.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83092871-1	chr8	83092371	83093371	+	563.0	f1_balb.idr	Intergenic	Intergenic	-72481.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	6.0	14.0	12.0	8.5	7.5	1.5
Merged-chr2-103716433-2	chr2	103715933	103716933	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 16 of 16)	intron (NM_178890, intron 16 of 16)	44837.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-10944856-1	chr4	10944356	10945356	+	563.0	f1_balb.idr	Intergenic	Lx6|LINE|L1	62763.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	1.0	0.5	1.5	0.0	0.0	0.0
Merged-chr16-38256412-1	chr16	38255912	38256912	+	563.0	f1_balb.idr	intron (NM_001098404, intron 2 of 8)	intron (NM_001098404, intron 2 of 8)	38412.0	NM_010936	18171.0	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding	4.0	3.5	0.5	0.0	0.0	4.5
Merged-chr5-64210420-2	chr5	64209920	64210920	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-19937.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-57503871-2	chr8	57503371	57504371	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_126553, intron 2 of 3)	RMER13A|LTR|ERVK	-1944.0	NR_126556	78353.0	Mm.426240	NR_126553	ENSMUSG00000096917	2500002B13Rik	-	RIKEN cDNA 2500002B13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55592639-2	chr14	55592139	55593139	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194346, intron 3 of 20)	intron (NM_194346, intron 3 of 20)	897.0	NM_194346	268749.0	Mm.23748	NM_194346	ENSMUSG00000047098	Rnf31	AL033293|BC031509|Flj10111|HOIP|Paul|mFLJ00217	ring finger protein 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98406774-2	chr12	98406274	98407274	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117070.0	NR_136759	105245437.0	Mm.446375	NR_136759	ENSMUSG00000113613	Gm40893	-	predicted gene, 40893	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120159644-2	chr8	120159144	120160144	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163760, intron 10 of 12)	intron (NM_001163760, intron 10 of 12)	14715.0	NM_001163760	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135404439-2	chr5	135403939	135404939	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9893.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55715122-2	chr19	55714622	55715622	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12918.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32278266-2	chr4	32277766	32278766	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139169.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-116926818-2	chr14	116926318	116927318	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011821, intron 1 of 8)	CpG	1521.0	NM_011821	23888.0	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	2.0	0.0	0.0	5.0	0.0	0.0
Merged-chr8-126777599-1	chr8	126777099	126778099	+	563.0	f1_c57bl6.idr	Intergenic	Intergenic	-71421.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	2.0	4.0	5.0	2.5	1.5	0.0
Merged-chr10-122762923-2	chr10	122762423	122763423	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	83608.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95147460-2	chr10	95146960	95147960	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-1635.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-142340480-2	chr2	142339980	142340980	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 16 of 18)	intron (NM_001013802, intron 16 of 18)	560984.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19719274-2	chr7	19718774	19719774	+	563.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008990, exon 8 of 9)	exon (NM_008990, exon 8 of 9)	-3845.0	NM_016871	53333.0	Mm.61682	NM_016871	ENSMUSG00000002984	Tomm40	AW539759|Mom35|Tom40	translocase of outer mitochondrial membrane 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156525216-2	chr2	156524742	156525742	+	563.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013510, exon 15 of 22)	exon (NM_013510, exon 15 of 22)	-22334.0	NM_026661	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	0.0	0.0	2.0	0.0	2.0	1.5
Merged-chr9-40241240-2	chr9	40240740	40241740	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27976.0	NM_001083917	235281.0	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97492741-1	chr6	97492241	97493241	+	563.0	f1_balb.idr	intron (NM_145148, intron 2 of 23)	MER20|DNA|hAT-Charlie	-4921.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	7.5	4.0	4.0	0.0	5.0	10.0
Merged-chr15-66891459-1	chr15	66890959	66891959	+	563.0	f1_c57bl6.idr	promoter-TSS (NM_018865)	promoter-TSS (NM_018865)	66.0	NM_018865	22402.0	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	0.5	0.0	0.0	2.0	0.0	2.0
Merged-chr8-55115856-2	chr8	55115356	55116356	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161128.0	NM_001253756	234267.0	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127722630-1	chr2	127722130	127723130	+	563.0	f1_c57bl6.idr	intron (NM_145532, intron 1 of 3)	intron (NM_145532, intron 1 of 3)	7267.0	NM_145532	228576.0	Mm.133036	NM_145532	ENSMUSG00000027377	Mall	BC012256|BENE	mal, T cell differentiation protein-like	protein-coding	3.5	13.0	5.5	4.0	5.0	1.0
Merged-chr15-35063286-2	chr15	35062786	35063786	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357821, intron 7 of 11)	L2a|LINE|L2	92520.0	NM_001357821	56274.0	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81183696-2	chr10	81183196	81184196	+	563.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007828)	promoter-TSS (NM_007828)	-222.0	NM_007828	13144.0	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-5167142-2	chr3	5166642	5167642	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-51412.0	NM_030708	80892.0	Mm.41522	NM_030708	ENSMUSG00000025255	Zfhx4	A930021B15|C130041O22Rik|Zfh-4|Zfh4	zinc finger homeodomain 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111455309-1	chr12	111454809	111455809	+	563.0	f0_c57.idr	TTS (NM_009396)	TTS (NM_009396)	12648.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19851538-3	chr10	19851045	19852045	+	563.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029529)	promoter-TSS (NM_029529)	-86.0	NM_029529	76157.0	Mm.74324	NM_029529	ENSMUSG00000050473	Slc35d3	6230421J19Rik|Frcl1	solute carrier family 35, member D3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-59892215-2	chr19	59891715	59892715	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51149.0	NM_001033172	74998.0	Mm.24167	NM_001033172	ENSMUSG00000040022	Rab11fip2	4930470G04Rik|A830046J09Rik|AW558126|Nrip11	RAB11 family interacting protein 2 (class I)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25585771-2	chr14	25585271	25586271	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 6 of 23)	intron (NM_183208, intron 6 of 23)	-1033.0	NR_033492	77592.0	Mm.444871	NM_175264		4931406H21Rik	-	RIKEN cDNA 4931406H21 gene	ncRNA	0.0	0.5	1.5	0.0	0.0	0.0
Merged-chr4-145852081-2	chr4	145851581	145852581	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	14862.0	NR_033612	236069.0	Mm.276881	NR_033612	ENSMUSG00000096233	Gm13238	-	carnitine deficiency-associated gene expressed in ventricle 3 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-73099374-2	chr10	73098874	73099874	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12669.0	NR_040646	327768.0	Mm.417745	NR_040646	ENSMUSG00000111994	A330049N07Rik	-	RIKEN cDNA A330049N07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51595490-2	chr11	51594990	51595990	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028398, intron 8 of 12)	intron (NM_028398, intron 8 of 12)	10733.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80250206-2	chr10	80249706	80250706	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029272, intron 1 of 7)	ID_B1|SINE|B4	754.0	NM_029272	75406.0	Mm.28712	NM_029272	ENSMUSG00000020153	Ndufs7	1010001M04Rik	NADH dehydrogenase (ubiquinone) Fe-S protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55837493-2	chr13	55836993	55837993	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6068.0	NM_011097	18740.0	Mm.135195	NM_011097	ENSMUSG00000021506	Pitx1	Bft|P-OTX|Potx|Ptx1	paired-like homeodomain transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20744464-1	chr11	20743964	20744964	+	563.0	f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-2908.0	NM_181411	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	0.0	0.0	0.0	0.0	0.0	9.0
Merged-chr13-107955366-2	chr13	107954808	107955808	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65244.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	2.5	10.5	23.0	3.5	10.5	17.5
Merged-chr13-5425487-1	chr13	5424987	5425987	+	563.0	f0_balb.idr	Intergenic	Intergenic	432605.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144554075-2	chr2	144553575	144554575	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2154.0	NM_001252544	27054.0	Mm.248492	NM_019787	ENSMUSG00000027429	Sec23b	-	SEC23 homolog B, COPII coat complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72511595-2	chr6	72511095	72512095	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32796.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-91779233-1	chr17	91778733	91779733	+	563.0	f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-686431.0	NM_020252	18189.0	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	6.0	10.0	1.0	0.0	2.0	2.5
Merged-chr4-106300934-1	chr4	106300434	106301434	+	563.0	f0_balb.idr	Intergenic	RLTR28|LTR|ERVL	-15279.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	4.0	0.0	3.5	0.0	3.0	2.0
Merged-chr7-143523970-2	chr7	143523470	143524470	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285490, intron 12 of 14)	intron (NM_001285490, intron 12 of 14)	-21446.0	NM_009434	22113.0	Mm.334344	NM_009434	ENSMUSG00000010760	Phlda2	Ipl|Tssc3	pleckstrin homology like domain, family A, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81845276-1	chr15	81844776	81845776	+	563.0	f1_c57bl6.idr	Intergenic	Intergenic	13050.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	150.0	347.0	228.5	148.0	272.5	204.0
Merged-chr9-111429192-1	chr9	111428692	111429692	+	563.0	f0_balb.idr	Intergenic	Intergenic	-9889.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	0.0	1.0	4.0	0.0	3.0	3.5
Merged-chr19-32775017-1	chr19	32774517	32775517	+	563.0	f0_balb.idr	intron (NM_008960, intron 1 of 8)	B3A|SINE|B2	17440.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	3.0	4.5	10.5	2.5	3.0	8.5
Merged-chr3-18243818-2	chr3	18243318	18244318	+	563.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007825)	promoter-TSS (NM_007825)	-480.0	NM_007825	13123.0	Mm.316000	NM_007825	ENSMUSG00000039519	Cyp7b1	AW261589|D3Ertd552e|hct-1	cytochrome P450, family 7, subfamily b, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167064888-2	chr2	167064388	167065388	+	563.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028540)	promoter-TSS (NR_028540)	-405.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-22488381-2	chr4	22487881	22488881	+	563.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008899)	promoter-TSS (NM_008899)	-15.0	NM_008899	18992.0	Mm.129387	NM_008899	ENSMUSG00000095139	Pou3f2	9430075J19Rik|A230098E07Rik|Brn-2|Brn2|OTF-7|Otf7|oct-7	POU domain, class 3, transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87465315-1	chr6	87464815	87465815	+	563.0	f1_c57bl6.idr	intron (NM_001037727, intron 9 of 10)	intron (NM_001037727, intron 9 of 10)	31012.0	NR_104483	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.0	0.0	2.0	0.0	0.0	3.5
Merged-chr5-96896929-1	chr5	96896429	96897429	+	563.0	f1_balb.idr	Intergenic	Intergenic	-24343.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	5.5	0.0	1.0	0.0	2.0	0.5
Merged-chr10-67180658-2	chr10	67180158	67181158	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 2 of 25)	intron (NM_207221, intron 2 of 25)	-5092.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-72904683-1	chr17	72904183	72905183	+	563.0	f1_balb.idr	Intergenic	Intergenic	-13622.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0.0	1.5	0.0	1.0	3.5	1.0
Merged-chr3-9339966-1	chr3	9339466	9340466	+	563.0	f1_balb.idr	Intergenic	Intergenic	-63112.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	2.5
Merged-chr15-78621130-2	chr15	78620626	78621626	+	563.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028195, exon 13 of 13)	3' UTR (NM_028195, exon 13 of 13)	24079.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0.0	4.0	0.0	0.0	0.0	4.0
Merged-chr17-23977291-1	chr17	23976791	23977791	+	563.0	f0_balb.idr	Intergenic	RLTR20B2|LTR|ERVK	-2061.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	5.5	10.0	9.0	15.0	10.5	13.0
Merged-chr1-34839895-1	chr1	34839395	34840395	+	563.0	f0_balb.idr	intron (NM_001160236, intron 1 of 6)	intron (NM_001160236, intron 1 of 6)	3155.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-78215292-2	chr16	78214792	78215792	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40162.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21385782-1	chr5	21385282	21386282	+	563.0	f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	ID_B1|SINE|B4	13109.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25127401-1	chr7	25126901	25127901	+	563.0	f1_balb.idr	intron (NM_001163556, intron 1 of 13)	intron (NM_001163556, intron 1 of 13)	5059.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-93657711-1	chr6	93657211	93658211	+	563.0	f1_c57bl6.idr	Intergenic	Intergenic	255252.0	NR_104594	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	4.5	0.5	0.0	2.5	0.0	1.5
Merged-chr8-107562000-2	chr8	107561500	107562500	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	10756.0	NR_029553	387158.0		NR_029553	ENSMUSG00000065439	Mir140	Mirn140|mir-140|mmu-mir-140	microRNA 140	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8878955-2	chr4	8878455	8879455	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	127631.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr6-88908786-2	chr6	88908286	88909286	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011906, intron 4 of 11)	intron (NM_011906, intron 4 of 11)	6535.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24623402-2	chr10	24622902	24623902	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27960.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-60975845-2	chr1	60975345	60976345	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2069.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	27.0	28.0	24.0	31.0	44.5	26.0
Merged-chr3-56866724-2	chr3	56866224	56867224	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	435264.0	NM_008536	17112.0	Mm.856	NM_008536	ENSMUSG00000027800	Tm4sf1	L6|M3s1	transmembrane 4 superfamily member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-97437933-2	chr16	97437433	97438433	+	563.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019517, exon 9 of 9)	3' UTR (NM_019517, exon 9 of 9)	24972.0	NM_010846	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-24871422-1	chr19	24870922	24871922	+	563.0	f0_balb.idr	Intergenic	Intergenic	-9580.0	NM_175013	226041.0	Mm.105222	NM_175013	ENSMUSG00000041731	Pgm5	4833423B07|9530034F03Rik|D830025G17|aciculin	phosphoglucomutase 5	protein-coding	0.0	6.5	5.5	0.0	5.5	0.5
Merged-chr14-51067720-1	chr14	51067220	51068220	+	563.0	f1_balb.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	3722.0	NM_207558	404319.0	Mm.377276	NM_207558	ENSMUSG00000035932	Olfr750	GA_x5J8B7W5WBF-6267395-6266441|GA_x6K02T2PMLR-6808276-6807281|MOR103-18	olfactory receptor 750	protein-coding	6.5	0.0	1.5	0.5	0.5	0.0
Merged-chr17-27572999-2	chr17	27572499	27573499	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7272.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	0.0	5.5	1.0	2.0	0.0	3.0
Merged-chr1-38898033-2	chr1	38897542	38898542	+	563.0	f0_balb.idr|f1_c57bl6.idr	5' UTR (NM_145142, exon 1 of 7)	5' UTR (NM_145142, exon 1 of 7)	118.0	NM_145142	98388.0	Mm.260054	NM_145142	ENSMUSG00000026080	Chst10	AI507003|AU041319|Hnk-1st|ST	carbohydrate sulfotransferase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr13-117029764-2	chr13	117029264	117030264	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4248.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-87330470-1	chr12	87329970	87330970	+	563.0	f0_c57.idr	intron (NM_011479, intron 9 of 11)	intron (NM_011479, intron 9 of 11)	-30765.0	NM_001290302	217738.0	Mm.219363	NM_001290302	ENSMUSG00000050671	Ism2	Gm264|Thsd3	isthmin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120395501-1	chr11	120395001	120396001	+	563.0	f1_balb.idr	intron (NM_199469, intron 12 of 15)	B1_Mus1|SINE|Alu	-16755.0	NM_027980	71885.0	Mm.274890	NM_027980	ENSMUSG00000025384	Faap100	2310003H01Rik	Fanconi anemia core complex associated protein 100	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27287811-1	chr2	27287311	27288311	+	563.0	f1_c57bl6.idr	intron (NR_133905, intron 12 of 29)	B2_Mm2|SINE|B2	-40508.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112387523-1	chr13	112387023	112388023	+	563.0	f0_c57.idr	Intergenic	Intergenic	-76547.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	5.0	10.5	5.5	0.0	5.0	0.5
Merged-chr4-116476057-2	chr4	116475557	116476557	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-11876.0	NM_008641	17776.0	Mm.9287	NM_008641	ENSMUSG00000003810	Mast2	MAST205|Mtssk	microtubule associated serine/threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-120816226-2	chr4	120815726	120816726	+	563.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357192)	promoter-TSS (NM_001357192)	-513.0	NM_001357192	18046.0	Mm.318389	NM_008692	ENSMUSG00000032897	Nfyc	-	nuclear transcription factor-Y gamma	protein-coding	0.0	0.0	1.0	0.0	2.5	4.5
Merged-chr13-93188362-1	chr13	93187862	93188862	+	563.0	f0_balb.idr	intron (NR_154997, intron 1 of 15)	L1_Rod|LINE|L1	4055.0	NM_001361536	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	18.0	55.0	32.5	21.0	51.0	33.5
Merged-chr5-31291909-2	chr5	31291409	31292409	+	563.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026298)	promoter-TSS (NM_026298)	-795.0	NM_026298	67661.0	Mm.293023	NM_026298	ENSMUSG00000038564	Ift172	4930553F24Rik|Slb|avc1|wim	intraflagellar transport 172	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120216757-1	chr14	120216257	120217257	+	563.0	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-58912.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126652345-2	chr8	126651845	126652845	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-58909.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	10.5	0.0	0.5	0.0	0.0	0.0
Merged-chr7-81886327-1	chr7	81885827	81886827	+	563.0	f1_balb.idr	intron (NM_013886, intron 5 of 5)	intron (NM_013886, intron 5 of 5)	23640.0	NM_001291282	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	5.0	3.5	1.5	0.0	16.0	1.0
Merged-chr9-121983613-2	chr9	121983113	121984113	+	563.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153540, exon 2 of 2)	exon (NM_153540, exon 2 of 2)	12413.0	NM_001289559	215494.0	Mm.402151	NM_153540	ENSMUSG00000066235	Pomgnt2	Ago61|C85492|Gtdc2	protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48244040-2	chr17	48243540	48244540	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347399, intron 2 of 2)	intron (NM_001347399, intron 2 of 2)	-3689.0	NM_021407	58218.0	Mm.302438	NM_021407	ENSMUSG00000041754	Trem3	BB134760	triggering receptor expressed on myeloid cells 3	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr12-77100033-1	chr12	77099533	77100533	+	563.0	f0_balb.idr	Intergenic	Intergenic	-137785.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69814230-2	chr11	69813730	69814730	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4210.0	NM_175368	108803.0	Mm.73263	NM_175368	ENSMUSG00000044084	Spem2	4933402P03Rik	SPEM family member 2	protein-coding	0.0	2.0	0.0	0.0	0.0	0.0
Merged-chr9-105055007-1	chr9	105054507	105055507	+	563.0	f1_balb.idr	intron (NM_053159, intron 2 of 9)	intron (NM_053159, intron 2 of 9)	1739.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	7.0	4.0	10.0	12.5	6.5	9.5
Merged-chr3-107910323-2	chr3	107909823	107910823	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14110.0	NR_015459	329735.0	Mm.270500	NM_177858	ENSMUSG00000086968	4933431E20Rik	-	RIKEN cDNA 4933431E20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53025123-2	chr4	53024623	53025623	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	13243.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75182147-2	chr10	75181647	75182647	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081412, intron 22 of 22)	intron (NM_001081412, intron 22 of 22)	-29926.0	NM_153406	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118484765-1	chr11	118484265	118485265	+	563.0	f1_balb.idr	intron (NR_153103, intron 8 of 13)	intron (NR_153103, intron 8 of 13)	7933.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-52104875-2	chr16	52104375	52105375	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	RSINE1|SINE|B4	73326.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86226846-2	chr15	86226346	86227346	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 1 of 12)	intron (NM_145476, intron 1 of 12)	12387.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173789135-2	chr2	173788635	173789635	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51564.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-16811499-1	chr12	16810999	16811999	+	563.0	f1_c57bl6.idr	intron (NM_033270, intron 1 of 6)	intron (NM_033270, intron 1 of 6)	534.0	NM_033270	50496.0	Mm.23296	NM_033270	ENSMUSG00000057469	E2f6	AI462434|E2F6a|E2F6b|EMA	E2F transcription factor 6	protein-coding	12.0	15.0	17.5	4.0	10.5	19.5
Merged-chr15-79692109-2	chr15	79691609	79692609	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013818, intron 1 of 11)	MIR|SINE|MIR	1213.0	NM_013818	14904.0	Mm.19080	NM_013818	ENSMUSG00000042535	Gtpbp1	AL022987|AW045683|C85212|GP-1|Gtpbp	GTP binding protein 1	protein-coding	0.0	0.0	0.0	0.0	4.0	1.5
Merged-chr6-26428519-1	chr6	26428019	26429019	+	563.0	f0_balb.idr	Intergenic	L1_Mur3|LINE|L1	497093.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158375618-3	chr2	158375132	158376132	+	562.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175692)	promoter-TSS (NM_175692)	-6.0	NM_175692	319317.0	Mm.294494	NM_175692	ENSMUSG00000044349	Snhg11	A930034L06Rik|AI854265|AL022637|AW319638|E130013N09Rik	small nucleolar RNA host gene 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117028095-2	chr2	117027595	117028595	+	562.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-92976.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75569008-2	chr11	75568508	75569508	+	562.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 11 of 13)	PB1D7|SINE|Alu	17579.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	1.0	2.0	4.5	1.0	2.0	4.5
Merged-chr7-44529360-2	chr7	44528860	44529860	+	562.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_019866, intron 4 of 5)	intron (NM_019866, intron 4 of 5)	2711.0	NM_019866	272382.0	Mm.8012	NM_019866	ENSMUSG00000008193	Spib	Spi-B	Spi-B transcription factor (Spi-1/PU.1 related)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22351411-1	chr16	22350911	22351911	+	562.75	f0_balb.idr	Intergenic	L1MC3|LINE|L1	56423.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139310027-3	chr4	139309512	139310512	+	562.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025337)	promoter-TSS (NM_025337)	696.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	10.0	43.0	17.0	18.0	36.5	47.0
Merged-chr14-73177657-2	chr14	73177157	73178157	+	562.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_134083, intron 13 of 14)	intron (NM_134083, intron 13 of 14)	29194.0	NR_030459	751541.0		NR_030459	ENSMUSG00000076121	Mir687	Mirn687|mir-687|mmu-mir-687	microRNA 687	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-105389498-2	chr9	105389011	105390011	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172461, intron 2 of 15)	intron (NM_172461, intron 2 of 15)	5776.0	NM_172461	208583.0	Mm.347509	NM_172461	ENSMUSG00000035032	Nek11	4932416N14Rik	NIMA (never in mitosis gene a)-related expressed kinase 11	protein-coding	1.5	4.0	2.0	0.0	5.0	6.0
Merged-chr11-62613437-2	chr11	62612937	62613937	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357955, intron 2 of 3)	intron (NM_001357955, intron 2 of 3)	8907.0	NR_028541	100217444.0		NR_028541		Snord65	MBII-135|snoRNA135	small nucleolar RNA, C/D box 65	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-86025313-2	chr7	86024813	86025813	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-63831.0	NM_001105187	546980.0	Mm.469905	NM_001105187	ENSMUSG00000090774	Vmn2r74	EG546980	vomeronasal 2, receptor 74	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101576185-2	chr11	101575685	101576685	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008676, intron 20 of 23)	intron (NM_008676, intron 20 of 23)	-6057.0	NM_001359326	217203.0	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122532527-2	chr14	122532027	122533027	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 1 of 24)	intron (NR_153443, intron 1 of 24)	-1801.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123213713-2	chr8	123213184	123214184	+	562.5	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_145606)	promoter-TSS (NM_145606)	826.0	NM_177279	320869.0	Mm.258354	NM_177279	ENSMUSG00000048478	Spata33	4732415M23Rik|AI847264	spermatogenesis associated 33	protein-coding	4.0	4.5	1.5	7.0	2.5	4.0
Merged-chr3-56657778-2	chr3	56657278	56658278	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	-474077.0	NM_030595	26422.0	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-6889095-2	chr13	6888595	6889595	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13C2|LTR|ERVK	-240324.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55589651-2	chr16	55589151	55590151	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A2|LTR|ERVL	94920.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-125724762-2	chr2	125724260	125725260	+	562.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199022)	promoter-TSS (NM_199022)	-612.0	NM_199022	271849.0	Mm.425101	NM_199022	ENSMUSG00000035109	Shc4	6230417E10Rik|9930029B02Rik|Gm685|RaLP	SHC (Src homology 2 domain containing) family, member 4	protein-coding	0.0	0.0	0.0	1.5	0.0	0.0
Merged-chr17-24489318-2	chr17	24488818	24489818	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360469, intron 1 of 17)	intron (NM_001360469, intron 1 of 17)	535.0	NM_027937	268932.0	Mm.70989	NM_027937	ENSMUSG00000033597	Caskin1	3300002N10Rik|C130061I24|C630036E02Rik|mKIAA1306	CASK interacting protein 1	protein-coding	0.0	0.0	4.0	0.0	2.0	0.0
Merged-chr13-9593988-2	chr13	9593488	9594488	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 17 of 36)	intron (NM_001081426, intron 17 of 36)	169822.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-15395296-2	chr17	15394796	15395796	+	562.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024203)	promoter-TSS (NM_024203)	-906.0	NM_001357822	67544.0	Mm.35039	NM_024203	ENSMUSG00000014763	Fam120b	4932442K08Rik|AW049283|AW413338|CCPG|Pgcc1|mKIAA1838	family with sequence similarity 120, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35046422-2	chr9	35045922	35046922	+	562.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009178)	TTS (NM_009178)	-70306.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0.0	0.0	0.0	1.0	1.5	0.0
Merged-chr16-36746887-2	chr16	36746387	36747387	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER119|DNA|hAT-Charlie	38075.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20896092-2	chr9	20895592	20896592	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016876, intron 6 of 10)	intron (NM_016876, intron 6 of 10)	2498.0	NM_016876	53356.0	Mm.427309	NM_016876	ENSMUSG00000070319	Eif3g	44kDa|D0Jmb4|Eif3s4|TU-189B2|eIF3-p44|p44	eukaryotic translation initiation factor 3, subunit G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121736616-2	chr3	121736116	121737116	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13079.0	NM_010171	14066.0	Mm.273188	NM_010171	ENSMUSG00000028128	F3	AA409063|CD142|Cf-3|Cf3|TF	coagulation factor III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-17166238-2	chr11	17165738	17166738	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024459, intron 1 of 5)	intron (NM_024459, intron 1 of 5)	6940.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80785992-2	chr11	80785492	80786492	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5967.0	NM_177390	338367.0	Mm.151948	NM_177390	ENSMUSG00000035441	Myo1d	9930104H07Rik|AW544947|D11Ertd9e|myosin-1d	myosin ID	protein-coding	7.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80586032-2	chr10	80585532	80586532	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145421, intron 2 of 4)	intron (NM_145421, intron 2 of 4)	4309.0	NM_145421	216169.0	Mm.29802	NM_145421	ENSMUSG00000003346	Abhd17a	1700013O15Rik|BC005632|D10Bwg1364e|Fam108a	abhydrolase domain containing 17A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-126939003-2	chr6	126938503	126939503	+	562.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138594)	promoter-TSS (NM_138594)	584.0	NM_001347455	19362.0	Mm.204634	NM_009013	ENSMUSG00000030346	Rad51ap1	2510006L10Rik|RAB22	RAD51 associated protein 1	protein-coding	14.0	15.5	10.0	3.0	7.5	5.0
Merged-chr3-154329532-2	chr3	154329032	154330032	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010713, intron 1 of 8)	CpG	1028.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr13-91169146-2	chr13	91168646	91169646	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025770, intron 2 of 7)	intron (NM_025770, intron 2 of 7)	54841.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-153709477-2	chr3	153708977	153709977	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 1 of 4)	RMER1A|Other|Other	15656.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80898652-2	chr10	80898152	80899152	+	562.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013895)	TTS (NM_013895)	2317.0	NM_013895	30055.0	Mm.142132	NM_013895	ENSMUSG00000020219	Timm13	D10Ertd378e|Tim9|Timm9	translocase of inner mitochondrial membrane 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35133192-2	chr7	35132692	35133692	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	13899.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28208604-2	chr17	28208104	28209104	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027185, intron 1 of 10)	intron (NM_027185, intron 1 of 10)	826.0	NM_027185	23853.0	Mm.204731	NM_027185	ENSMUSG00000002257	Def6	2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6	differentially expressed in FDCP 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57037938-2	chr17	57037438	57038438	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346527, intron 5 of 7)	B1_Mur4|SINE|Alu	3716.0	NM_001346527	103775.0	Mm.33647	NM_175333	ENSMUSG00000011486	Slc25a41	4933406J04Rik|AI507137	solute carrier family 25, member 41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55869658-2	chr19	55869158	55870158	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-25663.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61704997-2	chr9	61704497	61705497	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	209513.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-158466401-2	chr3	158465901	158466901	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081358, intron 1 of 27)	intron (NM_001081358, intron 1 of 27)	95820.0	NM_001291452	242274.0	Mm.132162	NM_001081358	ENSMUSG00000028176	Lrrc7	AK122498|densin|mKIAA1365	leucine rich repeat containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-100853300-2	chr13	100852800	100853800	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-19873.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71274112-2	chr8	71273612	71274612	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 1 of 39)	intron (NM_001142322, intron 1 of 39)	1398.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28447675-2	chr7	28447175	28448175	+	562.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_022024)	TTS (NM_022024)	-4310.0	NM_030562	80749.0	Mm.483073	NM_030562	ENSMUSG00000030600	Lrfn1	BC004018|SALM2|Semo1	leucine rich repeat and fibronectin type III domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103271465-2	chr15	103270965	103271965	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1423.0	NM_019817	56447.0	Mm.29473	NM_019817	ENSMUSG00000060992	Copz1	5930435A22Rik|AA407760|D4Ertd360e	coatomer protein complex, subunit zeta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89920939-2	chr3	89920439	89921439	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-7743.0	NM_010559	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	1.0	5.5	0.0	0.0	5.5	0.0
Merged-chr17-81413093-2	chr17	81412593	81413593	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 7 of 8)	intron (NR_104580, intron 7 of 8)	325294.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-84068664-2	chr6	84068164	84069164	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 10 of 54)	MER67C|LTR|ERV1	49278.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-15800664-2	chr11	15800164	15801164	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-457060.0	NM_001290539	211739.0	Mm.284015	NM_145967	ENSMUSG00000048834	Vstm2a	Vstm2	V-set and transmembrane domain containing 2A	protein-coding	0.0	0.0	0.5	0.0	0.0	1.0
Merged-chr17-69255937-2	chr17	69255437	69256437	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 9 of 21)	intron (NM_001355736, intron 9 of 21)	21269.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-64306787-2	chr14	64306287	64307287	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253714, intron 1 of 4)	intron (NM_001253714, intron 1 of 4)	110169.0	NM_001253716	110265.0	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40858744-2	chr12	40858244	40859244	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-165346.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80347474-2	chr7	80346974	80347974	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4337.0	NM_026812	68695.0	Mm.21171	NM_026812	ENSMUSG00000030532	Hddc3	1110033O09Rik|C86475|MESH1	HD domain containing 3	protein-coding	0.0	0.0	1.5	6.0	3.5	2.5
Merged-chr2-28622721-2	chr2	28622221	28623221	+	562.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008114)	promoter-TSS (NM_008114)	-739.0	NM_001160406	14582.0	Mm.373385	NM_008114	ENSMUSG00000026815	Gfi1b	Gfi-1B	growth factor independent 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106333769-2	chr9	106333269	106334269	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 10 of 10)	intron (NM_027354, intron 10 of 10)	-34863.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-103820442-2	chr5	103819942	103820942	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133919, intron 7 of 19)	intron (NM_133919, intron 7 of 19)	65869.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57796746-2	chr6	57796246	57797246	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 1 of 4)	intron (NM_146168, intron 1 of 4)	28379.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127129174-2	chr7	127128661	127129661	+	562.5	f0_c57.idr|f1_balb.idr	Intergenic	B4A|SINE|B4	-7132.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-23422001-2	chr13	23421501	23422501	+	562.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013924, exon 3 of 3)	exon (NM_013924, exon 3 of 3)	1865.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-73228558-2	chr6	73228058	73229058	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A1|DNA|hAT-Charlie	-6927.0	NM_001164669	330355.0	Mm.333166	NM_001164669	ENSMUSG00000052861	Dnah6	9830168K20|A730004I20Rik|Dnahc6|mKIAA1697|mdhc6	dynein, axonemal, heavy chain 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-5324380-2	chr9	5323880	5324880	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007609, intron 4 of 8)	intron (NM_007609, intron 4 of 8)	15531.0	NM_007609	12363.0	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73686457-2	chr12	73685957	73686957	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	101661.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-70154621-2	chr10	70154121	70155121	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111121, intron 2 of 8)	intron (NM_001111121, intron 2 of 8)	-50043.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-91143607-2	chr10	91143107	91144107	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19644.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-8204944-2	chr2	8204444	8205444	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	-808746.0	NM_001110231	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3353170-2	chr8	3352670	3353670	+	562.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033378)	promoter-TSS (NM_001033378)	-245.0	NM_001033378	319493.0	Mm.234565	NM_001033378	ENSMUSG00000074497	A430078G23Rik	-	RIKEN cDNA A430078G23 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-109021754-2	chr7	109021254	109022254	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021885, intron 3 of 11)	intron (NM_021885, intron 3 of 11)	10874.0	NM_021885	22141.0	Mm.439722	NM_021885	ENSMUSG00000031028	Tub	rd5|tub	tubby bipartite transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-111097060-2	chr5	111096560	111097560	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 3 of 22)	intron (NM_001267622, intron 3 of 22)	92916.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-57572730-2	chr8	57572230	57573230	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 2 of 11)	intron (NM_001167981, intron 2 of 11)	60887.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106819410-2	chr9	106818910	106819910	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2566.0	NM_001015507	321006.0	Mm.440089	NM_001015507	ENSMUSG00000040325	Dcaf1	AI447437|B930007L02Rik|Vprbp|mKIAA0800	DDB1 and CUL4 associated factor 1	protein-coding	0.0	0.0	1.5	0.0	3.5	2.0
Merged-chr4-126108860-2	chr4	126108360	126109360	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 1 of 10)	MIRb|SINE|MIR	4903.0	NM_001145827	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80708403-2	chr10	80707903	80708903	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007460, intron 30 of 30)	intron (NM_007460, intron 30 of 30)	5710.0	NM_027829	71564.0	Mm.35802	NM_027829	ENSMUSG00000055862	Izumo4	9030607L17Rik|AI550407	IZUMO family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27333851-2	chr7	27333361	27334361	+	562.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310678)	promoter-TSS (NM_001310678)	-198.0	NM_001310678	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0.0	0.5	2.5	0.0	0.5	2.0
Merged-chr6-128447619-2	chr6	128447119	128448119	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_028593, intron 2 of 4)	intron (NR_028593, intron 2 of 4)	8862.0	NR_028593	791299.0	Mm.297516	NR_028592	ENSMUSG00000059659	Gm10069	-	predicted gene 10069	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-36052836-2	chr13	36052336	36053336	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_201358, intron 2 of 2)	MLT1H1|LTR|ERVL-MaLR	64521.0	NM_201358	380840.0	Mm.390576	NM_201358	ENSMUSG00000046573	Lyrm4	BC034664|Gm903	LYR motif containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53217145-2	chr4	53216645	53217645	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29051.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13981792-1	chr10	13981292	13982292	+	562.5	f1_balb.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	15413.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	30.5	38.0	20.0	31.5	36.0	23.0
Merged-chr2-55896060-2	chr2	55895560	55896560	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	460090.0	NM_008426	16519.0	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42165549-2	chr19	42165049	42166049	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-5018.0	NM_177319	319740.0	Mm.287359	NM_177319	ENSMUSG00000018820	Zfyve27	2210011N02Rik|9530077C24Rik|AI426636|AI593546|AI835681	zinc finger, FYVE domain containing 27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99471613-2	chr15	99471113	99472113	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029236, intron 1 of 1)	intron (NM_029236, intron 1 of 1)	3117.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11489594-2	chr8	11489094	11490094	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	-7912.0	NM_001190357	69225.0	Mm.64911	NM_026995	ENSMUSG00000031505	Naxd	0710008K08Rik|2810407E01Rik|Carkd	NAD(P)HX dehydratase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119123590-2	chr4	119123090	119124090	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011400, intron 2 of 9)	intron (NM_011400, intron 2 of 9)	14845.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-31813022-2	chr18	31812522	31813522	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028866, intron 1 of 21)	T-rich|Low_complexity|Low_complexity	8965.0	NM_001170966	74320.0	Mm.277705	NM_028866	ENSMUSG00000024400	Wdr33	1110001N06Rik|2310011G05Rik|2810021O11Rik|8430413N20Rik|WDC146	WD repeat domain 33	protein-coding	1.0	1.0	0.0	0.0	9.5	0.0
Merged-chr1-135537815-2	chr1	135537315	135538315	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173437, intron 1 of 28)	intron (NM_173437, intron 1 of 28)	47540.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-49632829-2	chr4	49632329	49633329	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_182999, intron 2 of 20)	MIRb|SINE|MIR	769.0	NM_182999	109331.0	Mm.24765	NM_182999	ENSMUSG00000028309	Rnf20	4833430L21Rik|AW540162|C79397|mKIAA4116	ring finger protein 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55736545-3	chr1	55735970	55736970	+	562.5	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_001114663, intron 5 of 5)	intron (NM_001114663, intron 5 of 5)	-194771.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	0.0	0.0	0.0	0.0	4.5	0.0
Merged-chr1-36692331-2	chr1	36691831	36692831	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009942, intron 2 of 3)	intron (NM_009942, intron 2 of 3)	844.0	NM_009942	12859.0	Mm.180182	NM_009942	ENSMUSG00000061518	Cox5b	-	cytochrome c oxidase subunit Vb	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83639154-2	chr17	83638654	83639654	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7259.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132181735-2	chr4	132181235	132182235	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30521.0	NM_145393	213541.0	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH domain family 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24850159-2	chr2	24849659	24850659	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109686, intron 8 of 25)	intron (NM_001109686, intron 8 of 25)	69450.0	NM_172545	77683.0	Mm.24176	NM_172545	ENSMUSG00000036893	Ehmt1	9230102N17Rik|D330003E03|Eu-HMTase1|GLP|GLP1|KMT1D|mKIAA1876	euchromatic histone methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-13099193-2	chr15	13098693	13099693	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007666, intron 1 of 11)	L1_Mus4|LINE|L1	74482.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121474789-2	chr10	121474289	121475289	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	1461.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	35.5	98.0	61.0	32.5	91.0	89.0
Merged-chr11-94590276-1	chr11	94589776	94590776	+	562.5	f1_c57bl6.idr	intron (NM_153807, intron 1 of 15)	B1_Mus2|SINE|Alu	11510.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	26.0	68.5	47.5	29.5	105.5	75.0
Merged-chr16-24667063-2	chr16	24666563	24667563	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 6 of 12)	intron (NM_178665, intron 6 of 12)	-54792.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141404117-2	chr4	141403617	141404617	+	562.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019701)	TTS (NM_019701)	-5411.0	NM_024412	12733.0	Mm.167900	NM_024412	ENSMUSG00000033770	Clcnka	C75963|CLC-K1|Clcnk1	chloride channel, voltage-sensitive Ka	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-15609226-2	chr14	15608726	15609726	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-170239.0	NM_146052	218763.0	Mm.138039	NM_146052	ENSMUSG00000045201	Lrrc3b	BC019794|LRP15	leucine rich repeat containing 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-81150016-2	chr3	81149516	81150516	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357746, intron 3 of 6)	intron (NM_001357746, intron 3 of 6)	113600.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	0.5	5.0	0.5	6.5	3.5	1.5
Merged-chr1-135741514-2	chr1	135741014	135742014	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153810, intron 2 of 3)	intron (NR_153810, intron 2 of 3)	12347.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77408821-2	chr11	77408321	77409321	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291190, intron 4 of 13)	ORR1C1|LTR|ERVL-MaLR	-55092.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105096281-2	chr1	105095781	105096781	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-259726.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-90217689-2	chr18	90217189	90218189	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-292465.0	NM_198295	67988.0	Mm.268041	NM_198295	ENSMUSG00000024614	Tmx3	6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830	thioredoxin-related transmembrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-55511806-2	chr6	55511303	55512303	+	562.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	59825.0	NM_007407	11517.0	Mm.44245	NM_007407	ENSMUSG00000029778	Adcyap1r1	2900024I10Rik|AI846590|PAC1|PAC1R|PACAP1-R	adenylate cyclase activating polypeptide 1 receptor 1	protein-coding	0.0	0.0	6.0	4.5	5.0	7.5
Merged-chr11-82544580-2	chr11	82544080	82545080	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88773.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37529423-2	chr9	37528875	37529875	+	562.416626	f1_balb.idr|f1_c57bl6.idr	intron (NR_136939, intron 1 of 6)	intron (NR_136939, intron 1 of 6)	1286.0	NM_027102	69524.0	Mm.41751	NM_027102	ENSMUSG00000001946	Esam	2310008D05Rik|Esam1|W117m	endothelial cell-specific adhesion molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91068028-3	chr1	91067535	91068535	+	562.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 1 of 22)	Tigger7|DNA|TcMar-Tigger	14591.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92048624-2	chr1	92048142	92049142	+	562.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_207225, intron 3 of 26)	intron (NM_207225, intron 3 of 26)	131699.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr2-90441267-2	chr2	90440767	90441767	+	562.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 21 of 23)	intron (NM_008982, intron 21 of 23)	37907.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102695590-2	chr7	102695102	102696102	+	562.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2614.0	NM_146361	258358.0	Mm.377455	NM_146361	ENSMUSG00000073967	Olfr557	MOR18-3	olfactory receptor 557	protein-coding	2.0	2.5	0.0	7.5	1.0	11.5
Merged-chr2-35213933-2	chr2	35213433	35214433	+	562.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-12813.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39240625-1	chr18	39240125	39241125	+	562.0	f0_balb.idr	intron (NM_001361073, intron 14 of 21)	intron (NM_001361073, intron 14 of 21)	246620.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-97314848-1	chr2	97314348	97315348	+	562.0	f1_c57bl6.idr	intron (NM_001289742, intron 5 of 7)	Lx5b|LINE|L1	-152809.0	NM_001289744	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.0	3.5	3.0	6.0	1.5	0.5
Merged-chr3-122047578-2	chr3	122047078	122048078	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007378, intron 1 of 49)	intron (NM_007378, intron 1 of 49)	3118.0	NM_007378	11304.0	Mm.3918	NM_007378	ENSMUSG00000028125	Abca4	AW050280|Abc10|Abcr|D430003I15Rik|RmP	ATP-binding cassette, sub-family A (ABC1), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68720580-2	chr10	68720080	68721080	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3166.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39529376-2	chr1	39528876	39529876	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	-6325.0	NM_028043	52846.0	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165860432-1	chr2	165859932	165860932	+	562.0	f1_c57bl6.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	-2259.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	18.0	51.5	29.5	14.0	37.5	24.0
Merged-chr9-45041137-2	chr9	45040637	45041637	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1207.0	NM_007962	14012.0	Mm.33240	NM_007962	ENSMUSG00000032092	Mpzl2	Eva|Eva1	myelin protein zero-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-94733912-2	chr7	94733412	94734412	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1437332.0	NM_001310762	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0.0	1.0	1.0	0.0	1.0	0.0
Merged-chr8-14887211-1	chr8	14886711	14887711	+	562.0	f1_balb.idr	Intergenic	Intergenic	-1325.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88753686-2	chr15	88753186	88754186	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181412, intron 1 of 2)	B1_Mm|SINE|Alu	1975.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-9107965-1	chr5	9107465	9108465	+	562.0	f0_balb.idr	intron (NM_001081029, intron 2 of 4)	intron (NM_001081029, intron 2 of 4)	7228.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-87683809-2	chr4	87683309	87684309	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122514.0	NM_001286158	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33550505-1	chr17	33550005	33551005	+	562.0	f1_c57bl6.idr	exon (NM_172619, exon 22 of 25)	exon (NM_172619, exon 22 of 25)	-5202.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	0.0	5.0	2.0	0.0	2.5	1.0
Merged-chr3-65963004-2	chr3	65962504	65963504	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4755.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0.0	0.0	1.0	0.0	3.0	0.0
Merged-chr1-120063141-1	chr1	120062641	120063641	+	562.0	f1_c57bl6.idr	exon (NM_001311077, exon 13 of 13)	exon (NM_001311077, exon 13 of 13)	10639.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	0.0	5.0	4.0	8.0	0.0	0.0
Merged-chr10-88415645-2	chr10	88415145	88416145	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004164, intron 5 of 20)	intron (NM_001004164, intron 5 of 20)	36233.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21295133-2	chr5	21294633	21295633	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 17 of 18)	MTD|LTR|ERVL-MaLR	-77540.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25608695-2	chr14	25608195	25609195	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 6 of 23)	intron (NM_183208, intron 6 of 23)	5182.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	5.0	4.0	1.0	9.0	3.5	6.5
Merged-chr3-108652527-1	chr3	108652027	108653027	+	562.0	f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1386.0	NM_145543	229725.0	Mm.214545	NM_145543	ENSMUSG00000027884	Clcc1	Mclc	chloride channel CLIC-like 1	protein-coding	2.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-49350847-1	chr5	49350347	49351347	+	562.0	f1_c57bl6.idr	Intergenic	Intergenic	-65188.0	NM_001199244	80334.0	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	0.0	2.5	4.0	0.0	4.0	0.0
Merged-chr2-116535468-1	chr2	116534968	116535968	+	562.0	f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-343223.0	NM_001355572	67356.0	Mm.131623	NM_026104	ENSMUSG00000027355	Tmco5	1700095F04Rik|Tmco5a	transmembrane and coiled-coil domains 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120530062-2	chr11	120529562	120530562	+	562.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008101)	promoter-TSS (NM_008101)	-665.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98132750-2	chr7	98132250	98133250	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007602, intron 5 of 12)	intron (NM_007602, intron 5 of 12)	12697.0	NM_011010	18378.0	Mm.440368	NM_011010	ENSMUSG00000074006	Omp	-	olfactory marker protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135686151-1	chr5	135685651	135686651	+	562.0	f1_c57bl6.idr	Intergenic	Intergenic	-2994.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	0.0	1.0	3.0	0.0	1.5	3.5
Merged-chr17-34846382-2	chr17	34845882	34846882	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021337, intron 10 of 27)	intron (NM_021337, intron 10 of 27)	-1215.0	NR_105936	102465586.0		NR_105936	ENSMUSG00000098460	Mir6970	Gm27589|mmu-mir-6970	microRNA 6970	ncRNA	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr5-105515903-1	chr5	105515403	105516403	+	562.0	f1_balb.idr	Intergenic	Intergenic	-3568.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	24.5	17.0	8.0	15.0	25.5	23.0
Merged-chr7-106816002-1	chr7	106815502	106816502	+	562.0	f0_balb.idr	intron (NM_028910, intron 2 of 4)	intron (NM_028910, intron 2 of 4)	1873.0	NM_001360747	66786.0	Mm.159186	NM_028910	ENSMUSG00000036744	Olfr701	4932441H21Rik|4933433E02Rik|MOR283-1	olfactory receptor 701	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-84704327-2	chr13	84703827	84704827	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	482031.0	NM_175187	72745.0	Mm.295063	NM_175187	ENSMUSG00000035762	Tmem161b	2810446P07Rik|AI843389	transmembrane protein 161B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-49114566-1	chr10	49114066	49115066	+	562.0	f1_balb.idr	intron (NM_001358866, intron 15 of 16)	L1_Mus4|LINE|L1	673371.0	NM_001358866	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr11-103344140-1	chr11	103343640	103344640	+	562.0	f1_c57bl6.idr	promoter-TSS (NR_045346)	promoter-TSS (NR_045346)	562.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0.0	0.0	1.0	0.0	0.5	0.0
Merged-chr2-120104661-1	chr2	120104161	120105161	+	562.0	f1_c57bl6.idr	intron (NM_133838, intron 3 of 5)	intron (NM_133838, intron 3 of 5)	49914.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	11.5	0.0	3.0	7.0	10.5	0.5
Merged-chr9-106362153-1	chr9	106361653	106362653	+	562.0	f0_c57.idr	Intergenic	RSINE1|SINE|B4	-6479.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	9.0	25.0	6.0	1.5	1.5	0.5
Merged-chr17-35859185-2	chr17	35858685	35859685	+	562.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001010833, exon 16 of 16)	3' UTR (NM_001010833, exon 16 of 16)	-2133.0	NM_134122	106582.0	Mm.390992	NM_134122	ENSMUSG00000059791	Nrm	2610307M02Rik|AI429796	nurim (nuclear envelope membrane protein)	protein-coding	8.0	4.0	3.0	7.5	12.0	2.5
Merged-chr3-90243540-1	chr3	90243040	90244040	+	562.0	f1_balb.idr	promoter-TSS (NM_001307935)	promoter-TSS (NM_001307935)	-28.0	NM_030080	78284.0	Mm.299952	NM_030080	ENSMUSG00000027938	Creb3l4	1700012K17Rik|5330432F22Rik|AIBZIP|AV040530|AV258827|CREB4|JAL|TISP40|acre1	cAMP responsive element binding protein 3-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr13-67728216-1	chr13	67727716	67728716	+	562.0	f0_c57.idr	intron (NM_145622, intron 1 of 3)	intron (NM_145622, intron 1 of 3)	957.0	NM_145622	235907.0	Mm.440123	NM_145622	ENSMUSG00000071281	Zfp65	KRAB5|Zfp71-rs1|pz114	zinc finger protein 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121387857-1	chr10	121387357	121388357	+	562.0	f1_c57bl6.idr	intron (NM_029364, intron 9 of 13)	intron (NM_029364, intron 9 of 13)	22767.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	21.5	0.5	1.5	0.0	1.0	5.5
Merged-chr9-82970516-2	chr9	82970016	82971016	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081216, intron 4 of 39)	MTD|LTR|ERVL-MaLR	4973.0	NM_001081216	83946.0	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121841475-2	chr8	121840975	121841975	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-11906.0	NM_145605	234825.0	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-69128406-2	chr2	69127906	69128906	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7394.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150820311-2	chr2	150819811	150820811	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153781, intron 13 of 19)	intron (NM_153781, intron 13 of 19)	22259.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35469120-1	chr17	35468620	35469620	+	562.0	f0_balb.idr	promoter-TSS (NM_010391)	promoter-TSS (NM_010391)	-969.0	NM_010391	15007.0	Mm.88795	NM_010391	ENSMUSG00000067235	H2-Q10	H-2Q10|Q10|Qa10	histocompatibility 2, Q region locus 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39150629-1	chr18	39150129	39151129	+	562.0	f0_balb.idr	intron (NM_001361073, intron 11 of 21)	LTR89|LTR|ERVL?	157484.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	5.0	0.0	0.0	8.0	0.0	1.0
Merged-chr7-113312005-1	chr7	113311505	113312505	+	562.0	f0_balb.idr	intron (NM_001357070, intron 18 of 19)	intron (NM_001357070, intron 18 of 19)	57334.0	NM_133700	68815.0	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	5.0	0.0	0.0	2.0	0.0	0.5
Merged-chr10-16714705-1	chr10	16714205	16715205	+	562.0	f0_balb.idr	Intergenic	Intergenic	381077.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115900266-2	chr6	115899766	115900766	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167763, intron 15 of 28)	intron (NM_001167763, intron 15 of 28)	-31661.0	NM_145383	212541.0	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83137708-2	chr15	83137208	83138208	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178627, intron 2 of 8)	intron (NM_178627, intron 2 of 8)	11670.0	NM_178627	73826.0	Mm.23758	NM_178627	ENSMUSG00000041815	Poldip3	1110008P04Rik|AA408269|AL022852|C77954|PDIP46|SKAR|mKIAA1649	polymerase (DNA-directed), delta interacting protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60491828-1	chr13	60491328	60492328	+	562.0	f0_c57.idr	Intergenic	Intergenic	-110119.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	62.5	47.0	69.0	10.0	15.5	12.0
Merged-chr10-55840031-2	chr10	55839531	55840531	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-266886.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156940886-1	chr1	156940386	156941386	+	562.0	f1_balb.idr	Intergenic	Intergenic	-1260.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	6.0	12.0	6.5	5.5	13.5	4.5
Merged-chr7-92737768-2	chr7	92737268	92738268	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3691.0	NR_015510	666737.0	Mm.473620	NR_015510	ENSMUSG00000074024	4632427E13Rik	AU015482	RIKEN cDNA 4632427E13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148533337-1	chr2	148532837	148533837	+	562.0	f1_c57bl6.idr	Intergenic	Intergenic	-89802.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0.0	0.0	2.5	0.0	4.5	0.5
Merged-chr18-65491762-1	chr18	65491262	65492262	+	562.0	f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	B4A|SINE|B4	60765.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.0	0.0	0.5	0.5	3.0	5.0
Merged-chr1-185282579-1	chr1	185282079	185283079	+	562.0	f1_balb.idr	intron (NM_001163754, intron 33 of 34)	intron (NM_001163754, intron 33 of 34)	-30740.0	NR_029580	387189.0		NR_029580	ENSMUSG00000065581	Mir194-1	Mirn194|Mirn194-1|miR-194|mir-194-1	microRNA 194-1	ncRNA	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr12-64668291-1	chr12	64667791	64668791	+	562.0	f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-193393.0	NM_001163271	623046.0	Mm.189552	NM_001163271	ENSMUSG00000043060	Fscb	EG623046	fibrous sheath CABYR binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-102896608-1	chr2	102896108	102897108	+	562.0	f0_c57.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	5057.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	17.0	51.5	28.0	17.0	35.0	20.0
Merged-chr3-144522847-2	chr3	144522347	144523347	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355234, intron 1 of 6)	intron (NM_001355234, intron 1 of 6)	47369.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139401960-2	chr5	139401460	139402460	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	-4427.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69107493-2	chr11	69106993	69107993	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159367, intron 19 of 22)	intron (NM_001159367, intron 19 of 22)	7341.0	NM_001159367	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0.0	1.0	5.5	1.0	2.0	1.5
Merged-chr7-4660090-2	chr7	4659590	4660590	+	562.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360629)	TTS (NM_001360629)	-1140.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137743788-2	chr4	137743288	137744288	+	562.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007431, exon 10 of 12)	exon (NM_007431, exon 10 of 12)	19327.0	NR_138592	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr9-107610221-1	chr9	107609721	107610721	+	562.0	f1_c57bl6.idr	promoter-TSS (NM_001291539)	promoter-TSS (NM_001291539)	-980.0	NM_001291539	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61070699-2	chr18	61070199	61071199	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008809, intron 10 of 22)	intron (NM_008809, intron 10 of 22)	25549.0	NM_008809	18596.0	Mm.4146	NM_008809	ENSMUSG00000024620	Pdgfrb	AI528809|CD140b|PDGFR-1|Pdgfr	platelet derived growth factor receptor, beta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75191518-2	chr8	75191018	75192018	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22426.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr15-80952178-1	chr15	80951678	80952678	+	562.0	f1_c57bl6.idr	intron (NM_009634, intron 1 of 12)	intron (NM_009634, intron 1 of 12)	3688.0	NM_009634	11564.0	Mm.38151	NM_009634	ENSMUSG00000022407	Adsl	Adl|Asl	adenylosuccinate lyase	protein-coding	0.0	0.0	1.0	0.0	3.0	1.0
Merged-chr3-28011058-2	chr3	28010558	28011558	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 1 of 25)	intron (NM_008875, intron 1 of 25)	26887.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165877272-2	chr2	165876772	165877772	+	562.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001291158, exon 1 of 24)	5' UTR (NM_001291158, exon 1 of 24)	1165.0	NM_001291158	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	5.0	29.5	16.0	5.5	34.5	6.0
Merged-chr11-32684138-2	chr11	32683638	32684638	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271347, intron 2 of 12)	intron (NM_001271347, intron 2 of 12)	41583.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0.0	0.5	0.0	0.0	0.5	0.0
Merged-chr13-6649853-1	chr13	6649353	6650353	+	562.0	f1_c57bl6.idr	Intergenic	Intergenic	-1082.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155682131-1	chr2	155681631	155682631	+	562.0	f0_balb.idr	intron (NM_019828, intron 1 of 18)	L1MB7|LINE|L1	10253.0	NM_019828	56407.0	Mm.234944	NM_019828	ENSMUSG00000038324	Trpc4ap	4833429F06Rik|D2Ertd113e|Trrp4ap|mFLJ00177|truss	transient receptor potential cation channel, subfamily C, member 4 associated protein	protein-coding	4.0	8.5	6.5	4.0	16.0	2.0
Merged-chr5-35677164-2	chr5	35676664	35677664	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042615, intron 1 of 6)	intron (NM_001042615, intron 1 of 6)	2616.0	NM_001042615	78558.0	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-31219289-2	chr5	31218789	31219789	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008014, intron 1 of 9)	(A)n|Simple_repeat|Simple_repeat	1256.0	NM_008014	14208.0	Mm.14501	NM_008014	ENSMUSG00000029147	Ppm1g	AI385652|Fin13	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	protein-coding	1.5	2.0	0.5	0.0	0.0	1.5
Merged-chr2-82860992-1	chr2	82860492	82861492	+	562.0	f1_balb.idr	Intergenic	Lx5b|LINE|L1	-468790.0	NR_152125	228116.0	Mm.246588	NR_152125	ENSMUSG00000087061	A130030D18Rik	Gm558	RIKEN cDNA A130030D18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113334911-2	chr6	113334411	113335411	+	562.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_149720)	TTS (NR_149720)	7935.0	NM_010957	18294.0	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-42136792-1	chr15	42136292	42137292	+	562.0	f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-267072.0	NM_175456	223513.0	Mm.148913	NM_175456	ENSMUSG00000042895	Abra	C130068O12Rik|STARS	actin-binding Rho activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55109876-2	chr14	55109376	55110376	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177049, intron 4 of 5)	intron (NM_177049, intron 4 of 5)	-3283.0	NM_007455	11766.0	Mm.238879	NM_007455	ENSMUSG00000040701	Ap1g2	Adtg2|G2ad	adaptor protein complex AP-1, gamma 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140623491-1	chr5	140622991	140623991	+	562.0	f0_balb.idr	exon (NM_175274, exon 14 of 14)	exon (NM_175274, exon 14 of 14)	16150.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67610499-1	chr18	67609999	67610999	+	562.0	f0_c57.idr	Intergenic	(CGG)n|Simple_repeat|Simple_repeat	30856.0	NM_001357523	225659.0	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	11.0	8.5	3.5	3.5	3.5	5.0
Merged-chr2-140835724-2	chr2	140835224	140836224	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 4 of 18)	intron (NM_001013802, intron 4 of 18)	-164248.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-114785934-1	chr9	114785434	114786434	+	562.0	f0_balb.idr	Intergenic	RMER5|LTR|ERV1	-3941.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	33.5	109.0	52.0	17.0	32.5	41.0
Merged-chr4-102665194-1	chr4	102664694	102665694	+	562.0	f0_balb.idr	Intergenic	Intergenic	75351.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.0	2.0	7.0	2.5	4.0	7.0
Merged-chr19-36923175-2	chr19	36922675	36923675	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2904.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-122606388-2	chr6	122605888	122606888	+	562.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008108, exon 2 of 2)	exon (NM_008108, exon 2 of 2)	3699.0	NM_008108	14562.0	Mm.299742	NM_008108	ENSMUSG00000030117	Gdf3	C78318|Gdf-3|Vgr-2|Vgr2|ecat9	growth differentiation factor 3	protein-coding	4.5	0.0	1.0	0.0	0.0	0.0
Merged-chr19-31084757-2	chr19	31084257	31085257	+	562.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_031249, exon 1 of 1)	exon (NM_031249, exon 1 of 1)	1916.0	NM_031249	83410.0	Mm.22031	NM_031249	ENSMUSG00000053536	Cstf2t	64kDa|C77975|tCstF-64|tauCstF-64	cleavage stimulation factor, 3' pre-RNA subunit 2, tau	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-79893484-2	chr17	79892984	79893984	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357752, intron 1 of 13)	intron (NM_001357752, intron 1 of 13)	2639.0	NM_178050	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6032830-2	chr19	6032330	6033330	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13746.0	NM_028769	74126.0	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	1.0	2.5	0.0	0.0	3.0	0.0
Merged-chr13-17968583-2	chr13	17968083	17969083	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24366.0	NM_019491	56044.0	Mm.27348	NM_019491	ENSMUSG00000008859	Rala	3010001O15Rik|AW322615|Ral|Rasl1	v-ral simian leukemia viral oncogene A (ras related)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-3707957-2	chr16	3707457	3708457	+	562.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001161790, exon 9 of 9)	3' UTR (NM_001161790, exon 9 of 9)	10167.0	NM_001161790	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134493152-2	chr5	134492652	134493652	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039162, intron 13 of 15)	intron (NM_001039162, intron 13 of 15)	-36436.0	NM_001081464	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9003259-1	chr3	9002759	9003759	+	562.0	f0_balb.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	945.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	38.0	66.5	41.5	38.5	67.0	41.0
Merged-chr5-103375394-2	chr5	103374894	103375894	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28796.0	NR_152117	75519.0	Mm.416851	NR_152117	ENSMUSG00000105426	1700021F02Rik	Gm42618	RIKEN cDNA 1700021F02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45040411-2	chr19	45039911	45040911	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195265, intron 2 of 15)	intron (NM_001195265, intron 2 of 15)	5361.0	NM_001195265	100503041.0	Mm.329877	NM_177605	ENSMUSG00000074818	Pdzd7	9130207N01|EG435601|Pdzk7	PDZ domain containing 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53259513-2	chr18	53259013	53260013	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	ORR1A3|LTR|ERVL-MaLR	13851.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-91752241-2	chr12	91751741	91752741	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	MTEb|LTR|ERVL-MaLR	34195.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85623999-1	chr1	85623499	85624499	+	562.0	f1_balb.idr	intron (NM_001013817, intron 7 of 16)	RMER19C|LTR|ERVK	-20108.0	NM_175397	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-108390798-1	chr13	108390298	108391298	+	562.0	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	74461.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-84742430-1	chr6	84741930	84742930	+	562.0	f0_balb.idr	intron (NM_177077, intron 20 of 21)	MLT1H|LTR|ERVL-MaLR	-148522.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-73239047-1	chr6	73238547	73239547	+	562.0	f0_c57.idr	Intergenic	Intergenic	-9458.0	NM_019879	56451.0	Mm.29845	NM_019879	ENSMUSG00000052738	Suclg1	1500000I01Rik|Sucla1	succinate-CoA ligase, GDP-forming, alpha subunit	protein-coding	10.5	22.0	21.5	1.5	3.0	5.5
Merged-chr18-74219484-1	chr18	74218984	74219984	+	562.0	f1_c57bl6.idr	exon (NM_028868, exon 9 of 15)	exon (NM_028868, exon 9 of 15)	3272.0	NM_028868	74322.0	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	0.0	0.5	0.0	0.0	1.0	3.5
Merged-chr4-33076345-1	chr4	33075845	33076845	+	562.0	f0_balb.idr	intron (NM_008076, intron 2 of 8)	intron (NM_008076, intron 2 of 8)	13233.0	NM_008076	14409.0	Mm.6227	NM_008076	ENSMUSG00000023267	Gabrr2	-	gamma-aminobutyric acid (GABA) C receptor, subunit rho 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62118075-2	chr18	62117575	62118575	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	61906.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67296974-1	chr10	67296474	67297474	+	562.0	f0_balb.idr	Intergenic	Intergenic	-11693.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-142058871-2	chr6	142058371	142059371	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-50126.0	NM_001081318	625716.0	Mm.295865	NM_001081318	ENSMUSG00000079263	Gm6614	EG625716	predicted gene 6614	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84947588-1	chr15	84947088	84948088	+	562.0	f0_balb.idr	3' UTR (NM_001033273, exon 10 of 10)	3' UTR (NM_001033273, exon 10 of 10)	4035.0	NR_037206	100526461.0		NR_037206	ENSMUSG00000080441	Mir1249	mir-1249|mmu-mir-1249	microRNA 1249	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97325764-1	chr7	97325264	97326264	+	562.0	f1_balb.idr	exon (NM_001177412, exon 1 of 10)	exon (NM_001177412, exon 1 of 10)	200.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	1.5	0.0	1.0	0.0	1.5	0.0
Merged-chr8-93011616-2	chr8	93011097	93012097	+	562.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36595.0	NM_001013764	244595.0	Mm.390089	NM_001013764	ENSMUSG00000071047	Ces1a	Ces1l|EG244595|Gm4976	carboxylesterase 1A	protein-coding	0.0	0.0	1.5	12.0	1.0	0.5
Merged-chr17-5479141-1	chr17	5478641	5479641	+	562.0	f0_balb.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	3928.0	NR_073378	666919.0		NR_073378		Gm8363	EG666919	non-SMC condensin II complex, subunit H2 pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88738676-1	chr4	88738176	88739176	+	562.0	f0_balb.idr	Intergenic	B3|SINE|B2	-16168.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77940456-2	chr18	77939956	77940956	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195633, intron 1 of 43)	intron (NM_001195633, intron 1 of 43)	1989.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73540429-2	chr2	73539929	73540929	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10942.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86226392-2	chr15	86225892	86226892	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 1 of 12)	intron (NM_145476, intron 1 of 12)	11933.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155591444-1	chr2	155590944	155591944	+	562.0	f1_c57bl6.idr	intron (NM_008180, intron 1 of 12)	intron (NM_008180, intron 1 of 12)	1366.0	NM_001291111	14854.0	Mm.252316	NM_008180	ENSMUSG00000027610	Gss	AI314904|GS-A/GS-B|GSH-S	glutathione synthetase	protein-coding	10.0	19.0	13.5	12.0	23.5	8.0
Merged-chr14-30804341-1	chr14	30803841	30804841	+	562.0	f1_balb.idr	intron (NM_001166531, intron 16 of 21)	intron (NM_001166531, intron 16 of 21)	-21253.0	NM_028839	69179.0	Mm.143025	NM_028839	ENSMUSG00000006526	Tmem110	1810038N08Rik|2310014H19Rik|AW554125|STIMATE	transmembrane protein 110	protein-coding	2.5	0.0	1.5	2.5	0.0	1.5
Merged-chr11-106027427-2	chr11	106026927	106027927	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037712, intron 11 of 12)	intron (NM_001037712, intron 11 of 12)	-9445.0	NM_027946	71833.0	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44456434-2	chr10	44455934	44456934	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007548, intron 2 of 6)	intron (NM_007548, intron 2 of 6)	2314.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38730441-2	chr16	38729941	38730941	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11818.0	NR_152434	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-63818640-2	chr7	63818140	63819140	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98217.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34289337-1	chr17	34288837	34289837	+	562.0	f1_balb.idr	Intergenic	Intergenic	-1566.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	1.5	17.5	8.5	10.5	28.5	12.0
Merged-chr12-71768249-1	chr12	71767749	71768749	+	562.0	f1_balb.idr	Intergenic	ID4|SINE|ID	-62819.0	NM_026102	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr7-30585321-1	chr7	30584821	30585821	+	562.0	f1_c57bl6.idr	exon (NM_001290573, exon 3 of 37)	exon (NM_001290573, exon 3 of 37)	3405.0	NM_001290573	75410.0	Mm.168688	NM_029274	ENSMUSG00000006307	Kmt2b	2610014H22Rik|Mll2|Wbp7|mKIAA0304	lysine (K)-specific methyltransferase 2B	protein-coding	1.0	2.0	8.5	0.0	0.0	0.5
Merged-chr14-52256139-2	chr14	52255639	52256639	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-18567.0	NM_201637	67772.0	Mm.289934	NM_201637	ENSMUSG00000053754	Chd8	5830451P18Rik|AU015341|Duplin|HELSNF1|mKIAA1564	chromodomain helicase DNA binding protein 8	protein-coding	0.0	0.5	3.5	0.0	0.0	4.0
Merged-chr10-80103324-2	chr10	80102824	80103824	+	562.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183426)	promoter-TSS (NM_183426)	-622.0	NM_001359637	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74752122-2	chr1	74751622	74752622	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J-int|LTR|ERVL-MaLR	-3167.0	NM_153744	241113.0	Mm.166501	NM_153744	ENSMUSG00000006542	Prkag3	AMPKg3L|AMPKg3S|Amkg3|Ampkg3	protein kinase, AMP-activated, gamma 3 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-153515664-1	chr4	153515164	153516164	+	562.0	f0_balb.idr	Intergenic	Intergenic	-32834.0	NM_001099299	230959.0	Mm.318874	NM_001099299	ENSMUSG00000039546	Ajap1	Gm573	adherens junction associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167268348-2	chr2	167267848	167268848	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27811.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-128137400-2	chr7	128136900	128137900	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021334, intron 14 of 29)	L1MB7|LINE|L1	7832.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	1.0	0.0	4.0	0.5	0.0	4.0
Merged-chr8-75040822-2	chr8	75040322	75041322	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136259, intron 1 of 15)	MIRb|SINE|MIR	7136.0	NM_011622	21968.0	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8512392-2	chr15	8511892	8512892	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67929.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59975105-2	chr2	59974605	59975605	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 6 of 35)	intron (NM_001001182, intron 6 of 35)	-92499.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16457305-2	chr19	16456805	16457805	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008137, intron 1 of 6)	intron (NM_008137, intron 1 of 6)	21638.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	7.0	0.0	0.5	0.0	3.5	3.0
Merged-chr9-108349513-2	chr9	108349013	108350013	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011678, intron 1 of 21)	B1_Mus1|SINE|Alu	1682.0	NM_011678	22258.0	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25523849-2	chr14	25523349	25524349	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 2 of 23)	intron (NM_183208, intron 2 of 23)	-10590.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166048458-1	chr2	166047958	166048958	+	562.0	f1_c57bl6.idr	exon (NM_008679, exon 5 of 23)	exon (NM_008679, exon 5 of 23)	55821.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142476993-2	chr7	142476493	142477493	+	562.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271523)	promoter-TSS (NM_001271523)	-20.0	NM_001271523	16985.0	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	0.0	0.0	1.5	0.0	0.0	2.5
Merged-chr13-21445972-2	chr13	21445472	21446472	+	561.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NR_035441)	TTS (NR_035441)	812.0	NR_035441	100316752.0		NR_035441	ENSMUSG00000084590	Mir1896	Mirn1896|mmu-mir-1896	microRNA 1896	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106782260-2	chr11	106781760	106782760	+	561.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NR_037224)	TTS (NR_037224)	499.0	NR_037224	100526469.0		NR_037224	ENSMUSG00000093273	Mir3064	mir-3064|mmu-mir-3064	microRNA 3064	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-88855650-2	chr15	88855150	88856150	+	561.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6544.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145253757-1	chr7	145253257	145254257	+	561.666687	f1_c57bl6.idr	TTS (NR_132642)	TTS (NR_132642)	30254.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	10.5	13.5	2.5	2.5	14.0	6.0
Merged-chr15-102399023-3	chr15	102398531	102399531	+	561.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-7285.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74589039-2	chr1	74588539	74589539	+	561.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025784, intron 1 of 7)	intron (NM_025784, intron 1 of 7)	750.0	NM_025784	66821.0	Mm.358700	NM_025784	ENSMUSG00000026172	Bcs1l	9130022O19Rik	BCS1-like (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104119084-2	chr8	104118584	104119584	+	561.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 2 of 11)	intron (NM_009868, intron 2 of 11)	-13211.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-8728337-2	chr14	8727837	8728837	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61947.0	NR_045968	74859.0	Mm.84041	NR_045968	ENSMUSG00000097898	4930455B14Rik	1700027C12Rik	RIKEN cDNA 4930455B14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-27019665-2	chr8	27019165	27020165	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4134.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-27155407-2	chr9	27154907	27155907	+	561.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023277)	promoter-TSS (NM_023277)	14.0	NM_023277	83964.0	Mm.28770	NM_023277	ENSMUSG00000031990	Jam3	1110002N23Rik|JAM-3|JAM-C|Jcam3	junction adhesion molecule 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64974510-2	chr17	64974010	64975010	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138439.0	NM_030031	78057.0	Mm.109380	NM_030031	ENSMUSG00000024088	4930583I09Rik	-	RIKEN cDNA 4930583I09 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135781046-2	chr5	135780546	135781546	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008617, intron 1 of 8)	intron (NM_008617, intron 1 of 8)	2397.0	NM_008617	17448.0	Mm.297096	NM_008617	ENSMUSG00000019179	Mdh2	MDH|Mdh-2|Mor-1|Mor1	malate dehydrogenase 2, NAD (mitochondrial)	protein-coding	2.5	6.0	1.5	0.5	3.5	1.5
Merged-chr17-29981772-2	chr17	29981272	29982272	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-23267.0	NM_148926	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71312758-2	chr17	71312258	71313258	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	-1202.0	NM_001357336	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	3.0	1.5	0.0	0.0	4.5	0.5
Merged-chr7-99470277-2	chr7	99469777	99470777	+	561.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_028145, exon 3 of 7)	exon (NM_028145, exon 3 of 7)	4273.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	5.0	11.0	30.0	16.5	34.5	6.0
Merged-chr5-9165517-2	chr5	9165017	9166017	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-3741.0	NR_152861	23857.0	Mm.22480	NM_011806	ENSMUSG00000042508	Dmtf1	Dimp|Dmp1	cyclin D binding myb-like transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163745781-2	chr2	163745281	163746281	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001272052, intron 1 of 11)	MIR|SINE|MIR	4458.0	NM_007398	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143316022-2	chr7	143315522	143316522	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008434, intron 11 of 15)	intron (NM_008434, intron 11 of 15)	14628.0	NR_045842	71153.0	Mm.398340	NR_045842	ENSMUSG00000101360	4933417O13Rik	-	RIKEN cDNA 4933417O13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25276206-2	chr7	25275706	25276706	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302811, intron 2 of 20)	intron (NM_001302811, intron 2 of 20)	-5973.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55436785-1	chr1	55436285	55437285	+	561.5	f0_balb.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	30839.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	7.0	2.5	4.0	8.0	17.5	4.5
Merged-chr11-119666644-2	chr11	119666144	119667144	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028898, intron 2 of 33)	RMER15|LTR|ERVL	63739.0	NM_028898	74370.0	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr14-64934044-1	chr14	64933544	64934544	+	561.5	f0_balb.idr	intron (NM_177338, intron 1 of 9)	B3|SINE|B2	15813.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	3.5	7.5	7.5	31.0	15.5	6.5
Merged-chr4-26354966-2	chr4	26354466	26355466	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8314.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16344119-2	chr19	16343619	16344619	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 5 of 6)	(CA)n|Simple_repeat|Simple_repeat	-29115.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98700878-2	chr15	98700378	98701378	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	-7349.0	NM_153518	105833.0	Mm.26205	NM_153518	ENSMUSG00000003354	Ccdc65	4933417K04Rik|AI428139|AU020178|NYD-SP28	coiled-coil domain containing 65	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-133037680-2	chr7	133037180	133038180	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	-22433.0	NM_001170744	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119328755-2	chr9	119328255	119329255	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6328.0	NM_133985	108737.0	Mm.293565	NM_133985	ENSMUSG00000036737	Oxsr1	2210022N24Rik|2810422B09Rik|AI462649|AW209236|Osr1|mKIAA1101	oxidative-stress responsive 1	protein-coding	0.0	0.0	0.5	0.0	1.0	2.5
Merged-chr13-107753357-2	chr13	107752857	107753857	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	65960.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47791743-2	chr17	47791243	47792243	+	561.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001161723, exon 9 of 9)	exon (NM_001161723, exon 9 of 9)	5999.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103468869-2	chr14	103468369	103469369	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44472.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132530814-2	chr4	132530314	132531314	+	561.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_007512, exon 4 of 4)	exon (NM_007512, exon 4 of 4)	4600.0	NM_007512	11983.0	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117378941-2	chr8	117378441	117379441	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 2 of 20)	intron (NM_028941, intron 2 of 20)	29771.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63196578-2	chr9	63196078	63197078	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011840, intron 20 of 21)	intron (NM_011840, intron 20 of 21)	-47617.0	NM_001163758	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7219486-2	chr9	7218986	7219986	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34981.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142499242-2	chr5	142498742	142499742	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310752, intron 5 of 14)	intron (NM_001310752, intron 5 of 14)	30834.0	NM_019943	56522.0	Mm.441372	NM_019943	ENSMUSG00000074817	Papolb	PAP|Paplob|Papola-ps|Papt|Plap-ps|Tpap	poly (A) polymerase beta (testis specific)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4792380-2	chr7	4791880	4792880	+	561.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009081)	promoter-TSS (NM_009081)	-585.0	NM_009081	19943.0	Mm.379002	NM_009081	ENSMUSG00000030432	Rpl28	D7Wsu21e	ribosomal protein L28	protein-coding	18.5	23.5	15.0	14.0	9.5	21.0
Merged-chr18-36730954-2	chr18	36730454	36731454	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-4116.0	NM_028036	71983.0	Mm.135188	NM_028036	ENSMUSG00000006850	Tmco6	2410015B03Rik	transmembrane and coiled-coil domains 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155566791-2	chr4	155566291	155567291	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355599, intron 1 of 10)	intron (NM_001355599, intron 1 of 10)	2976.0	NM_001355599	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0.0	1.5	0.0	0.0	0.0	3.5
Merged-chr12-111171532-2	chr12	111171032	111172032	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286122, intron 1 of 9)	B1_Mur4|SINE|Alu	5162.0	NM_011632	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75521186-2	chr10	75520686	75521686	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026095, intron 2 of 3)	ORR1D2|LTR|ERVL-MaLR	3144.0	NM_026095	67332.0	Mm.45151	NM_026095	ENSMUSG00000020180	Snrpd3	1700043E15Rik|2310009E13Rik|AW046420|SMD3	small nuclear ribonucleoprotein D3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70479394-2	chr12	70478894	70479894	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_037248, intron 2 of 4)	intron (NR_037248, intron 2 of 4)	26240.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8598596-2	chr4	8598107	8599107	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021518, intron 6 of 7)	intron (NM_021518, intron 6 of 7)	62963.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	2.0	2.0	0.0	11.0	0.0	1.0
Merged-chr2-150602372-2	chr2	150601872	150602872	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356491, intron 1 of 9)	intron (NM_001356491, intron 1 of 9)	6195.0	NM_001356491	71881.0	Mm.26599	NM_027977	ENSMUSG00000033096	Apmap	2310001A20Rik|AI314817	adipocyte plasma membrane associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117835551-2	chr10	117835051	117836051	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	B4A|SINE|B4	10423.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3579044-2	chr2	3578544	3579544	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	65979.0	NM_177647	227526.0	Mm.211455	NM_177647	ENSMUSG00000039496	Cdnf	9330140G23|Armetl1	cerebral dopamine neurotrophic factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118724508-2	chr14	118724008	118725008	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-18289.0	NM_001033336	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80064379-2	chr17	80063879	80064879	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21A|LTR|ERV1	-2111.0	NM_144802	72692.0	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17720398-2	chr10	17719898	17720898	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2830.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180327280-2	chr1	180326780	180327780	+	561.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_003623, exon 1 of 1)	non-coding (NR_003623, exon 1 of 1)	-3196.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73641737-2	chr15	73641237	73642237	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-16993.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69784550-2	chr11	69784050	69785050	+	561.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029348)	TTS (NM_029348)	11387.0	NM_009601	11443.0	Mm.86425	NM_009601	ENSMUSG00000041189	Chrnb1	Achr-2|Acrb	cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)	protein-coding	0.0	4.0	0.0	0.0	8.5	4.0
Merged-chr2-155787111-3	chr2	155786632	155787632	+	561.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010808, intron 1 of 8)	MTD|LTR|ERVL-MaLR	11790.0	NM_010808	17391.0	Mm.389325	NM_010808	ENSMUSG00000027612	Mmp24	AU040325|MMP-21|MT5-MMP|MT5MMP|MTMMP5	matrix metallopeptidase 24	protein-coding	11.5	0.0	1.0	9.0	0.0	8.5
Merged-chr5-74951176-2	chr5	74950676	74951676	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045866, intron 1 of 4)	intron (NR_045866, intron 1 of 4)	1982.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40625431-2	chr12	40624931	40625931	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 3 of 52)	intron (NM_172803, intron 3 of 52)	179378.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133095296-2	chr4	133094796	133095796	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35337.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141453606-2	chr7	141453106	141454106	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1582.0	NM_025802	66853.0	Mm.29998	NM_025802	ENSMUSG00000025509	Pnpla2	0610039C21Rik|1110001C14Rik|Atgl|TTS-2.2	patatin-like phospholipase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40881648-2	chr10	40881148	40882148	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027879, intron 1 of 14)	intron (NM_027879, intron 1 of 14)	1495.0	NM_027879	71713.0	Mm.46063	NM_027879	ENSMUSG00000038446	Cdc40	1200003H23Rik|EHB3|PRP17	cell division cycle 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34038721-2	chr17	34038221	34039221	+	561.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317722)	promoter-TSS (NM_001317722)	-417.0	NM_009926	12815.0	Mm.20230	NM_009926	ENSMUSG00000024330	Col11a2	-	collagen, type XI, alpha 2	protein-coding	1.5	0.0	2.0	0.0	0.0	0.0
Merged-chr9-79809136-2	chr9	79808636	79809636	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15495.0	NR_040734	74633.0	Mm.262175	NR_040734	ENSMUSG00000086918	4930429F24Rik	-	RIKEN cDNA 4930429F24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32223883-2	chr9	32223383	32224383	+	561.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177379)	promoter-TSS (NM_177379)	-366.0	NM_177379	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-10367061-2	chr3	10366561	10367561	+	561.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025519)	promoter-TSS (NM_025519)	88.0	NM_025519	66371.0	Mm.366147	NM_025519	ENSMUSG00000027536	Chmp4c	2010012P02Rik|2210015K02Rik|2310010I16Rik|Shax3|Snf7-3	charged multivesicular body protein 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79745479-2	chr15	79744979	79745979	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045069, intron 3 of 3)	intron (NR_045069, intron 3 of 3)	2781.0	NR_045069	100504191.0	Mm.421420	NR_045069	ENSMUSG00000087543	Gm16576	-	predicted gene 16576	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-49182677-2	chr17	49182177	49183177	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69144.0	NR_038144	69311.0	Mm.46140	NR_038141	ENSMUSG00000101012	1700008K24Rik	-	RIKEN cDNA 1700008K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-29535645-2	chr10	29535145	29536145	+	561.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028351, exon 1 of 5)	5' UTR (NM_028351, exon 1 of 5)	222.0	NM_028351	72780.0	Mm.45191	NM_028351	ENSMUSG00000019880	Rspo3	2810459H04Rik|AW742308|Cristin1|Thsd2	R-spondin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142901065-2	chr5	142900565	142901565	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5689.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88640099-2	chr17	88639599	88640599	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029858, intron 2 of 3)	L1VL2|LINE|L1	13544.0	NM_029858	77057.0	Mm.482203	NM_029858	ENSMUSG00000033855	Ston1	4921524J06Rik|C86231|Salf|Sblf	stonin 1	protein-coding	0.0	5.5	2.5	0.0	5.0	1.0
Merged-chr14-31256269-2	chr14	31255769	31256769	+	561.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_027088, exon 11 of 17)	exon (NM_027088, exon 11 of 17)	4780.0	NM_027088	104416.0	Mm.3779	NM_027088	ENSMUSG00000021901	Bap1	2300006C11Rik|AA989761|AW553466|mKIAA0272|uch-x4	Brca1 associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35404664-2	chr2	35404164	35405164	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010283, intron 8 of 8)	MTC|LTR|ERVL-MaLR	-7490.0	NM_001272040	74854.0	Mm.159338	NM_001080709	ENSMUSG00000079421	4930402F06Rik	-	RIKEN cDNA 4930402F06 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50289540-2	chr11	50289040	50290040	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 1 of 4)	ORR1B2|LTR|ERVL-MaLR	2796.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11629061-2	chr4	11628561	11629561	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49399.0	NM_001256142	100503583.0	Mm.249437	NM_001256142	ENSMUSG00000094595	Fsbp	-	fibrinogen silencer binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-111124255-2	chr7	111123755	111124755	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1580.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113157819-2	chr12	113157323	113158323	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134041, intron 4 of 7)	intron (NM_134041, intron 4 of 7)	1402.0	NM_134041	104732.0	Mm.87616	NM_134041	ENSMUSG00000037466	Tedc1	4930427A07Rik|AA536649|mFLJ00116	tubulin epsilon and delta complex 1	protein-coding	1.0	2.0	2.0	0.0	4.0	1.0
Merged-chr6-29206340-2	chr6	29205840	29206840	+	561.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011829, exon 5 of 14)	exon (NM_011829, exon 5 of 14)	5957.0	NM_011829	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20917747-1	chr11	20917247	20918247	+	561.5	f0_balb.idr	Intergenic	Intergenic	-86639.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	3.0	0.0	3.0	1.0	5.0	5.0
Merged-chr2-157133423-2	chr2	157132923	157133923	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001139520, intron 1 of 16)	B3A|SINE|B2	1799.0	NM_001139520	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-109027647-2	chr9	109027147	109028147	+	561.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_173019, exon 11 of 14)	exon (NM_173019, exon 11 of 14)	-10920.0	NM_001284332	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98912583-2	chr10	98912060	98913060	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2082.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67088303-1	chr15	67087803	67088803	+	561.5	f0_balb.idr	Intergenic	MER53|DNA|hAT	88579.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	7.5	24.5	6.0	14.5	33.0	12.0
Merged-chr17-8328668-2	chr17	8328168	8329168	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-11738.0	NR_028280	320111.0	Mm.442510	NM_178774	ENSMUSG00000055945	Prr18	9630019K15Rik	proline rich 18	protein-coding	0.0	0.0	2.5	0.0	0.0	2.0
Merged-chr4-133841224-2	chr4	133840712	133841712	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33519.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	15.0	0.0	3.5	0.0	2.5	3.0
Merged-chr7-84085880-2	chr7	84085380	84086380	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030728, intron 1 of 28)	intron (NM_030728, intron 1 of 28)	625.0	NM_030728	80982.0	Mm.160389	NM_030728	ENSMUSG00000052353	Cemip	12H19.01.T7|6330404C01Rik|9930013L23Rik|AY007814|Kiaa1199	cell migration inducing protein, hyaluronan binding	protein-coding	1.5	0.0	0.0	1.5	0.0	3.0
Merged-chr8-62616874-2	chr8	62616374	62617374	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-334358.0	NM_001252620	72902.0	Mm.334552	NM_023689	ENSMUSG00000054162	Spock3	2900045C01Rik|AI428471|mKIAA4039	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25367219-2	chr2	25366719	25367719	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-1556.0	NM_001033293	227620.0	Mm.33797	NM_001033293	ENSMUSG00000026956	Uap1l1	5730445F03Rik	UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-15077275-2	chr15	15076775	15077775	+	561.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-1700826.0	NM_009869	12565.0	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-49090381-1	chr5	49089881	49090881	+	561.0	f0_balb.idr	intron (NM_001199244, intron 1 of 7)	intron (NM_001199244, intron 1 of 7)	195278.0	NM_001199244	80334.0	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154962179-2	chr4	154961679	154962679	+	561.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010419, exon 3 of 3)	3' UTR (NM_010419, exon 3 of 3)	1256.0	NM_010419	15208.0	Mm.137268	NM_010419	ENSMUSG00000048001	Hes5	bHLHb38	hes family bHLH transcription factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43675372-1	chr17	43674872	43675872	+	561.0	f0_balb.idr	intron (NM_001285947, intron 1 of 10)	intron (NM_001285947, intron 1 of 10)	8000.0	NM_018887	56050.0	Mm.17991	NM_018887	ENSMUSG00000023963	Cyp39a1	mCYP39A1	cytochrome P450, family 39, subfamily a, polypeptide 1	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr2-93663898-1	chr2	93663398	93664398	+	561.0	f1_balb.idr	intron (NM_007442, intron 1 of 3)	intron (NM_007442, intron 1 of 3)	21464.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	0.5	11.0	1.0	0.0	0.5	0.0
Merged-chr18-80317764-2	chr18	80317264	80318264	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190373, intron 3 of 3)	B3|SINE|B2	46490.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76407721-2	chr16	76407221	76408221	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33894.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18202050-1	chr2	18201550	18202550	+	561.0	f0_balb.idr	intron (NM_010804, intron 16 of 22)	intron (NM_010804, intron 16 of 22)	137465.0	NM_001252561	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13154327-2	chr16	13153827	13154827	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	44591.0	NM_015769	50505.0	Mm.287837	NM_015769	ENSMUSG00000022545	Ercc4	AI606920|Xpf	excision repair cross-complementing rodent repair deficiency, complementation group 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-14113674-1	chr14	14113174	14114174	+	561.0	f1_balb.idr	intron (NM_025550, intron 6 of 7)	intron (NM_025550, intron 6 of 7)	7230.0	NM_025550	66413.0	Mm.27591	NM_025550	ENSMUSG00000021737	Psmd6	2400006A19Rik	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	protein-coding	3.5	0.0	3.0	0.0	0.0	4.0
Merged-chr7-99179686-2	chr7	99179186	99180186	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026384, intron 1 of 7)	intron (NM_026384, intron 1 of 7)	3027.0	NM_026384	67800.0	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	1.0	1.0	0.0	0.0	0.0	1.0
Merged-chr3-9659318-2	chr3	9658818	9659818	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-49233.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-88958841-1	chr11	88958341	88959341	+	561.0	f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	-3399.0	NM_029023	74617.0	Mm.34126	NM_029023	ENSMUSG00000000278	Scpep1	2410018F01Rik|4833411K15Rik|AI957256|Risc	serine carboxypeptidase 1	protein-coding	19.0	8.5	2.0	6.0	0.0	1.5
Merged-chr10-117026461-2	chr10	117025961	117026961	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18880.0	NM_146242	237560.0	Mm.37320	NM_146242	ENSMUSG00000060187	Lrrc10	D330003I11Rik|Hrlrrp|Serdin1	leucine rich repeat containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27675194-2	chr2	27674684	27675684	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2017.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-13277403-2	chr7	13276903	13277903	+	561.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199310)	promoter-TSS (NM_001199310)	90.0	NM_001199310	16881.0	Mm.288179	NM_010715	ENSMUSG00000056394	Lig1	AL033288|LigI	ligase I, DNA, ATP-dependent	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118881129-2	chr10	118880629	118881629	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12226.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102406660-2	chr11	102406160	102407160	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026542, intron 1 of 11)	intron (NM_026542, intron 1 of 11)	857.0	NM_026542	68066.0	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-83517104-2	chr14	83516604	83517604	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	558186.0	NR_153783	102635012.0	Mm.399509	NR_153783	ENSMUSG00000115043	Gm32455	-	predicted gene, 32455	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-56200117-1	chr13	56199617	56200617	+	561.0	f1_c57bl6.idr	Intergenic	Intergenic	-21232.0	NM_001168615	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	0.0	0.0	0.0	0.0	1.0	1.5
Merged-chr18-4959350-1	chr18	4958850	4959850	+	561.0	f0_balb.idr	Intergenic	Intergenic	-87239.0	NM_153153	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65429690-2	chr18	65429190	65430190	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	-1307.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	12.0	20.0	3.5	7.0	18.0	15.0
Merged-chr13-47238175-1	chr13	47237675	47238675	+	561.0	f1_c57bl6.idr	intron (NM_146042, intron 5 of 7)	intron (NM_146042, intron 5 of 7)	44172.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0.0	2.5	5.5	5.0	6.5	4.5
Merged-chr11-90227306-2	chr11	90226806	90227806	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-22170.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-48710732-2	chr12	48710232	48711232	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-672151.0	NM_001160112	15228.0	Mm.4704	NM_008241	ENSMUSG00000020950	Foxg1	2900064B05Rik|BF-1|Bf1|Hfh9|Hfhbf1	forkhead box G1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43827134-1	chr1	43826634	43827634	+	561.0	f0_balb.idr	intron (NM_026430, intron 1 of 14)	intron (NM_026430, intron 1 of 14)	574.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70508694-1	chr8	70508194	70509194	+	561.0	f1_c57bl6.idr	intron (NM_001348227, intron 3 of 3)	intron (NM_001348227, intron 3 of 3)	1251.0	NM_001348229	22186.0	Mm.297372	NM_019883	ENSMUSG00000090137	Uba52	Cep52|D8Ertd21e|Gm1863|Rps27a|Ubb|Ubc	ubiquitin A-52 residue ribosomal protein fusion product 1	protein-coding	14.5	14.5	4.5	0.5	12.0	20.5
Merged-chr1-191875092-1	chr1	191874592	191875592	+	561.0	f1_balb.idr	Intergenic	Intergenic	-31689.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	21.0	12.5	17.0	29.0	23.5	44.5
Merged-chr1-135369054-1	chr1	135368554	135369554	+	561.0	f0_balb.idr	TTS (NM_053106)	TTS (NM_053106)	6009.0	NM_175259	77552.0	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-111748777-1	chr13	111748277	111749277	+	561.0	f0_balb.idr	3' UTR (NM_011945, exon 20 of 20)	3' UTR (NM_011945, exon 20 of 20)	60216.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0.0	1.5	0.5	0.0	1.5	0.5
Merged-chr13-41539767-1	chr13	41539267	41540267	+	561.0	f0_balb.idr	Intergenic	Intergenic	-52407.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116871809-1	chr11	116871309	116872309	+	561.0	f1_balb.idr	intron (NM_178620, intron 11 of 12)	intron (NM_178620, intron 11 of 12)	17809.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	0.0	3.5	1.5	0.0	3.0	2.0
Merged-chr6-121337208-2	chr6	121336708	121337708	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144512, intron 14 of 14)	intron (NM_144512, intron 14 of 14)	-5868.0	NM_001347433	14411.0	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132333830-2	chr4	132333330	132334330	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133878, intron 9 of 9)	PB1D9|SINE|Alu	-4292.0	NM_027925	71787.0	Mm.239183	NM_027925	ENSMUSG00000028898	Trnau1ap	1110007F05Rik|AA387999|Secp43|Trspap1|WI1-2643G14.2	tRNA selenocysteine 1 associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34979723-2	chr2	34979223	34980223	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER90a|LTR|ERV1	-17951.0	NM_001326601	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-105813453-1	chr1	105812953	105813953	+	561.0	f0_balb.idr	intron (NM_009399, intron 3 of 9)	intron (NM_009399, intron 3 of 9)	32730.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-173981706-1	chr1	173981206	173982206	+	561.0	f0_balb.idr	intron (NM_008327, intron 1 of 6)	intron (NM_008327, intron 1 of 6)	1138.0	NM_008327	26388.0	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	0.0	2.0	0.0	0.0	0.0	0.0
Merged-chr10-68086407-2	chr10	68085907	68086907	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106837.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	2.0	0.0	5.5	2.0	0.0	5.5
Merged-chr9-21714523-1	chr9	21714023	21715023	+	561.0	f1_balb.idr	Intergenic	Intergenic	-9053.0	NM_001252658	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4911807-2	chr16	4911307	4912307	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 4 of 17)	intron (NM_001357062, intron 4 of 17)	25707.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54734416-1	chr14	54733916	54734916	+	561.0	f1_c57bl6.idr	intron (NM_016972, intron 6 of 10)	intron (NM_016972, intron 6 of 10)	-22242.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	13.0	57.5	47.0	17.0	41.5	43.0
Merged-chr15-63625879-1	chr15	63625379	63626379	+	561.0	f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-146271.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	1.5	0.0	4.0	7.0	6.0	0.5
Merged-chr14-101330709-1	chr14	101330209	101331209	+	561.0	f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-130640.0	NM_029680	76627.0	Mm.31415	NM_029680	ENSMUSG00000042888	Prr30	1700110M21Rik	proline rich 30	protein-coding	0.0	6.5	0.0	0.0	0.0	1.5
Merged-chr18-10724172-2	chr18	10723672	10724672	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-1453.0	NM_144860	225164.0	Mm.21500	NM_144860	ENSMUSG00000024294	Mib1	DIP-1|E430019M12Rik|Mib|mKIAA1323	mindbomb E3 ubiquitin protein ligase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-175695420-2	chr1	175694920	175695920	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-2788.0	NM_010098	13603.0	Mm.32744	NM_010098	ENSMUSG00000026525	Opn3	ERO|Ecpn	opsin 3	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr4-120107600-1	chr4	120107100	120108100	+	561.0	f1_balb.idr	intron (NM_010657, intron 5 of 8)	intron (NM_010657, intron 5 of 8)	-53606.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0.0	0.0	0.5	0.0	0.0	1.5
Merged-chr11-102308368-1	chr11	102307868	102308868	+	561.0	f1_balb.idr	intron (NM_001044383, intron 14 of 19)	intron (NM_001044383, intron 14 of 19)	8919.0	NM_001044383	21429.0	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr4-124849823-2	chr4	124849323	124850323	+	561.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153566)	promoter-TSS (NM_153566)	741.0	NM_001347196	68920.0	Mm.272397	NM_001142727	ENSMUSG00000078570	1110065P20Rik	C530005M16Rik	RIKEN cDNA 1110065P20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168905004-2	chr2	168904504	168905504	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	50583.0	NM_009564	22722.0	Mm.2095	NM_009564	ENSMUSG00000027551	Zfp64	-	zinc finger protein 64	protein-coding	0.0	0.0	1.0	0.0	2.0	4.0
Merged-chr16-4085008-1	chr16	4084508	4085508	+	561.0	f1_c57bl6.idr	exon (NM_001025432, exon 31 of 31)	exon (NM_001025432, exon 31 of 31)	-7198.0	NM_026508	68015.0	Mm.123366	NM_026508	ENSMUSG00000005981	Trap1	2410002K23Rik|HSP75	TNF receptor-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73473698-2	chr13	73473198	73474198	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145376, intron 1 of 13)	intron (NM_145376, intron 1 of 13)	6315.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-12928375-1	chr10	12927875	12928875	+	561.0	f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5248.0	NR_038028	320273.0	Mm.417706	NR_038027	ENSMUSG00000097378	B230208H11Rik	-	RIKEN cDNA B230208H11 gene	ncRNA	1.0	5.0	0.0	0.0	4.0	2.0
Merged-chr17-27846135-2	chr17	27845635	27846635	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011432, intron 4 of 5)	PB1D7|SINE|Alu	6048.0	NM_011432	20630.0	Mm.103949	NM_011432	ENSMUSG00000024217	Snrpc	Snrp1c|U1-C|U1C	U1 small nuclear ribonucleoprotein C	protein-coding	0.0	8.5	0.0	0.0	7.5	0.5
Merged-chr14-30631842-1	chr14	30631342	30632342	+	561.0	f1_c57bl6.idr	Intergenic	Intergenic	-5634.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	2.0	14.0	10.0	7.0	8.0	1.5
Merged-chr7-126694006-2	chr7	126693506	126694506	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029420, intron 1 of 5)	RMER6D|LTR|ERVK	1777.0	NM_029420	75764.0	Mm.280573	NM_029420	ENSMUSG00000059772	Slx1b	1110030E23Rik|2410170E21Rik|4833422P03Rik|AI853643|Giyd1|Giyd2	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32754542-2	chr19	32754042	32755042	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3035.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69229602-1	chr12	69229102	69230102	+	561.0	f1_c57bl6.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	-1412.0	NM_011133	18974.0	Mm.9199	NM_011133	ENSMUSG00000020974	Pole2	-	polymerase (DNA directed), epsilon 2 (p59 subunit)	protein-coding	0.0	0.0	3.5	3.5	3.0	1.5
Merged-chr9-106901170-1	chr9	106900670	106901670	+	561.0	f1_balb.idr	intron (NM_153413, intron 50 of 52)	intron (NM_153413, intron 50 of 52)	-9232.0	NM_029103	74840.0	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	0.0	0.0	1.0	4.0	1.0	2.0
Merged-chr4-134533759-1	chr4	134533259	134534259	+	561.0	f1_c57bl6.idr	intron (NM_029759, intron 1 of 6)	intron (NM_029759, intron 1 of 6)	1337.0	NM_001355188	76824.0	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	3.0	9.0	3.0	7.5	2.5	2.0
Merged-chr17-45814648-1	chr17	45814148	45815148	+	561.0	f1_c57bl6.idr	Intergenic	Intergenic	66804.0	NR_152136	75154.0	Mm.399341	NR_152136		4930542M03Rik	-	RIKEN cDNA 4930542M03 gene	ncRNA	3.0	0.0	0.0	0.0	0.0	1.0
Merged-chr4-137863756-1	chr4	137863256	137864256	+	561.0	f1_c57bl6.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	1519.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	0.0	4.5	0.5	9.5	9.0	21.5
Merged-chr19-32978675-1	chr19	32978175	32979175	+	561.0	f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-178437.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	8.5	1.0	0.0	1.5	13.0	1.0
Merged-chr7-118707225-1	chr7	118706725	118707725	+	561.0	f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-1487.0	NM_019580	56209.0	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	0.0	1.0	3.5	0.0	0.0	0.0
Merged-chr2-51638558-2	chr2	51638058	51639058	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	11047.0	NM_199158	387511.0	Mm.377918	NM_199158	ENSMUSG00000056115	Tas2r134	T2R134|Tas2r34	taste receptor, type 2, member 134	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111532436-2	chr12	111531936	111532936	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5665.0	NM_178041	217869.0	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80228519-2	chr10	80228019	80229019	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023431, intron 2 of 13)	intron (NM_023431, intron 2 of 13)	1921.0	NM_023431	68114.0	Mm.273418	NM_023431	ENSMUSG00000020156	Mum1	2610019J09|9430059D04Rik|UBE-1C2	melanoma associated antigen (mutated) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91642879-2	chr16	91642379	91643379	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357351, intron 2 of 21)	intron (NM_001357351, intron 2 of 21)	4093.0	NM_010256	14450.0	Mm.4505	NM_010256	ENSMUSG00000022962	Gart	Gaps|Prgs	phosphoribosylglycinamide formyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31062721-2	chr6	31062221	31063221	+	561.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029744)	promoter-TSS (NR_029744)	26.0	NR_029744	387222.0		NR_029744	ENSMUSG00000065610	Mir29a	Mirn29a|mir-29a|mmu-mir-29a	microRNA 29a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-85596158-2	chr9	85595658	85596658	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153176.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127551507-1	chr10	127551007	127552007	+	561.0	f1_c57bl6.idr	intron (NM_008512, intron 63 of 88)	IMPB_01|Satellite|Satellite	-16948.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.0	8.0	3.0	0.0	0.5	3.5
Merged-chr6-116072450-1	chr6	116071950	116072950	+	561.0	f0_balb.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	-77445.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32681358-2	chr9	32680858	32681858	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14684.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-194998417-2	chr1	194997917	194998917	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18982.0	NR_015566	320977.0	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93166897-2	chr1	93166397	93167397	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1526.0	NM_001310428	381284.0	Mm.193346	NM_001310428	ENSMUSG00000084989	Crocc2	E030010N08Rik|Gm976	ciliary rootlet coiled-coil, rootletin family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-178870142-1	chr2	178869642	178870642	+	561.0	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	439627.0	NM_198656	381409.0	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21529528-2	chr9	21529028	21530028	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_206536, intron 2 of 5)	intron (NM_206536, intron 2 of 5)	3351.0	NM_206536	382062.0	Mm.325205	NM_206536	ENSMUSG00000057191	AB124611	Gm1706	cDNA sequence AB124611	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-57500000-1	chr1	57499500	57500500	+	561.0	f0_balb.idr	Intergenic	Intergenic	-93326.0	NM_001302963	68736.0	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-89276395-1	chr4	89275895	89276895	+	561.0	f1_balb.idr	intron (NM_001040654, intron 2 of 2)	intron (NM_001040654, intron 2 of 2)	5797.0	NM_001040654	12578.0	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin dependent kinase inhibitor 2A	protein-coding	0.0	5.5	0.0	0.0	0.0	0.5
Merged-chr7-110167936-1	chr7	110167436	110168436	+	561.0	f1_balb.idr	Intergenic	B4A|SINE|B4	45877.0	NM_009516	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40371925-1	chr19	40371425	40372425	+	561.0	f0_balb.idr	intron (NM_001034962, intron 7 of 22)	intron (NM_001034962, intron 7 of 22)	30385.0	NM_001034964	20411.0	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.5	2.0	6.5	0.0	2.0	0.5
Merged-chr19-5859249-2	chr19	5858749	5859749	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026169, intron 9 of 10)	B1_Mus1|SINE|Alu	-13769.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23661026-1	chr17	23660526	23661526	+	561.0	f1_c57bl6.idr	intron (NM_153784, intron 1 of 9)	intron (NM_153784, intron 1 of 9)	520.0	NM_153784	212733.0	Mm.59997	NM_153784	ENSMUSG00000043782	Bicdl2	BICDR-2|Ccdc64b	BICD family like cargo adaptor 2	protein-coding	0.0	0.0	0.0	0.0	4.5	0.0
Merged-chr17-14382488-2	chr17	14381988	14382988	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022315, intron 9 of 12)	intron (NM_022315, intron 9 of 12)	16454.0	NR_027986	74917.0	Mm.32228	NM_183107		4930474M22Rik	-	RIKEN cDNA 4930474M22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23309292-2	chr16	23308792	23309792	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252506, intron 1 of 6)	MER5A|DNA|hAT-Charlie	18822.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59519499-2	chr2	59518999	59519999	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1-int|LTR|ERVL-MaLR	34846.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69011717-1	chr8	69011217	69012217	+	561.0	f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-77019.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	34.0	80.5	62.5	34.5	38.0	27.0
Merged-chr14-25207507-1	chr14	25207007	25208007	+	561.0	f1_c57bl6.idr	Intergenic	Intergenic	-64266.0	NR_045718	75862.0	Mm.109191	NR_045718	ENSMUSG00000114916	4930572O13Rik	-	RIKEN cDNA 4930572O13 gene	ncRNA	0.0	0.0	0.0	7.5	0.0	0.0
Merged-chr1-161027269-1	chr1	161026769	161027769	+	561.0	f1_balb.idr	intron (NM_001356489, intron 4 of 4)	(CAGG)n|Simple_repeat|Simple_repeat	7580.0	NM_001356489	240869.0	Mm.296127	NM_173424	ENSMUSG00000043467	Zbtb37	D430004I08Rik	zinc finger and BTB domain containing 37	protein-coding	2.5	5.0	3.0	4.5	0.5	0.5
Merged-chr14-81601714-1	chr14	81601214	81602214	+	561.0	f1_balb.idr	Intergenic	(TTAA)n|Simple_repeat|Simple_repeat	1601412.0	NM_001351947	380924.0	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115524697-2	chr6	115524222	115525222	+	561.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19982.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70907194-1	chr8	70906694	70907694	+	561.0	f1_c57bl6.idr	intron (NM_173013, intron 1 of 6)	intron (NM_173013, intron 1 of 6)	1220.0	NM_173013	270058.0	Mm.248559	NM_173013	ENSMUSG00000019261	Map1s	6430517J16Rik|Bpy2ip1|Map8|Mtap1s|VCY2IP1	microtubule-associated protein 1S	protein-coding	12.5	8.0	2.0	7.0	6.0	6.0
Merged-chr3-51293821-2	chr3	51293321	51294321	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 4 of 9)	RLTR20A4|LTR|ERVK	-16307.0	NM_001291062	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-30913243-1	chr13	30912743	30913743	+	561.0	f1_c57bl6.idr	intron (NM_025588, intron 6 of 27)	intron (NM_025588, intron 6 of 27)	34518.0	NM_153072	210554.0	Mm.450571	NM_153072	ENSMUSG00000076430	Hus1b	-	HUS1 checkpoint clamp component B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-40976392-2	chr13	40975892	40976892	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155347, intron 1 of 4)	MLTR11B|LTR|ERVK	-24618.0	NM_026550	68083.0	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70776757-2	chr11	70776257	70777257	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12310.0	NM_177565	193043.0	Mm.40966	NM_177565	ENSMUSG00000043602	Zfp3	AI854635|B230309J24|Fnp-1|Zfp-3	zinc finger protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118296270-1	chr11	118295770	118296770	+	561.0	f1_c57bl6.idr	Intergenic	Intergenic	-6026.0	NM_001033528	72344.0	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	5.5	0.0	0.0	0.0	0.5	0.0
Merged-chr11-68387057-2	chr11	68386557	68387557	+	561.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008744)	promoter-TSS (NM_008744)	-231.0	NM_008744	18208.0	Mm.39095	NM_008744	ENSMUSG00000020902	Ntn1	AI561871|BC019633|Netrin-1	netrin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-43322089-1	chr18	43321589	43322589	+	561.0	f0_balb.idr	3' UTR (NM_001291455, exon 14 of 14)	3' UTR (NM_001291455, exon 14 of 14)	51183.0	NM_001136086	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-59993685-1	chr1	59993185	59994185	+	561.0	f1_balb.idr	intron (NM_001357296, intron 10 of 10)	intron (NM_001357296, intron 10 of 10)	49437.0	NM_001357296	70375.0	Mm.17834	NM_027407	ENSMUSG00000026018	Ica1l	1700030B17Rik|Als2cr15|b2b3465Clo	islet cell autoantigen 1-like	protein-coding	10.0	9.5	2.0	5.0	0.0	2.0
Merged-chr18-78309916-2	chr18	78309416	78310416	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207651, intron 3 of 21)	intron (NM_207651, intron 3 of 21)	-103476.0	NM_001110274	27411.0	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70752379-2	chr17	70751879	70752879	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	94398.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	5.5	10.0	2.0	0.0	8.0	8.0
Merged-chr2-127453254-1	chr2	127452754	127453754	+	561.0	f1_c57bl6.idr	Intergenic	Intergenic	-8689.0	NM_029629	68126.0	Mm.288676	NM_029629	ENSMUSG00000027371	Fahd2a	1500003K14Rik|B430104H02Rik|Cgi-105|Fahd2	fumarylacetoacetate hydrolase domain containing 2A	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr2-31087855-2	chr2	31087355	31088355	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 4 of 15)	intron (NM_001355105, intron 4 of 15)	8645.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-108689307-2	chr12	108688807	108689807	+	561.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163395)	TTS (NM_001163395)	12999.0	NM_001171002	70059.0	Mm.207605	NM_027299	ENSMUSG00000021263	Degs2	2210008A03Rik|AI852933|DES2	delta(4)-desaturase, sphingolipid 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-119306939-2	chr1	119306439	119307439	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	115309.0	NM_008381	16324.0	Mm.3092	NM_008381	ENSMUSG00000037035	Inhbb	-	inhibin beta-B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-69022359-1	chr8	69021859	69022859	+	561.0	f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-66377.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	18.0	13.5	19.0	8.5	2.0	5.5
Merged-chr7-142385483-1	chr7	142384983	142385983	+	561.0	f0_balb.idr	exon (NM_009983, exon 2 of 9)	exon (NM_009983, exon 2 of 9)	2387.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	9.5	38.0	35.5	9.0	8.0	21.0
Merged-chr13-8847777-1	chr13	8847277	8848277	+	561.0	f1_balb.idr	intron (NM_001039388, intron 6 of 13)	intron (NM_001039388, intron 6 of 13)	23267.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77834477-1	chr15	77833977	77834977	+	561.0	f1_c57bl6.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	7698.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-80720292-1	chr1	80719792	80720792	+	561.0	f0_c57.idr	intron (NM_175291, intron 1 of 55)	Charlie22a|DNA|hAT-Charlie	38261.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53387377-1	chr19	53386877	53387877	+	561.0	f1_balb.idr	intron (NM_172429, intron 2 of 5)	intron (NM_172429, intron 2 of 5)	2664.0	NM_001356986	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	3.0	0.0	2.0	0.0	0.0	0.0
Merged-chr4-145201154-1	chr4	145200654	145201654	+	561.0	f0_balb.idr	Intergenic	ID_B1|SINE|B4	-6149.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180411060-2	chr1	180410560	180411560	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	72444.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42281719-1	chr10	42281219	42282219	+	561.0	f1_c57bl6.idr	Intergenic	Charlie8|DNA|hAT-Charlie	-4977.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99053615-2	chr7	99053115	99054115	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 6 of 14)	RLTR25B|LTR|ERVK	87529.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-148443574-1	chr6	148443074	148444074	+	561.0	f0_balb.idr	intron (NM_198967, intron 1 of 19)	intron (NM_198967, intron 1 of 19)	778.0	NM_198967	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-116418365-2	chr2	116417865	116418865	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-342269.0	NR_033447	69974.0	Mm.440293	NR_033447		2810405F15Rik	-	RIKEN cDNA 2810405F15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-3114082-1	chr17	3113582	3114582	+	561.0	f1_balb.idr	promoter-TSS (NM_134123)	promoter-TSS (NM_134123)	-890.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79198297-2	chr3	79197797	79198797	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14622.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	0.0	0.0	0.5	3.0	8.5	5.5
Merged-chr2-10359943-1	chr2	10359443	10360443	+	561.0	f0_balb.idr	Intergenic	Intergenic	-10508.0	NM_001198808	353282.0	Mm.329991	NM_177386	ENSMUSG00000061186	Sfmbt2	D2Wsu23e|D330030P06Rik	Scm-like with four mbt domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5942902-2	chr17	5942402	5943402	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151772, intron 1 of 25)	intron (NR_151772, intron 1 of 25)	1622.0	NM_001113352	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21626742-2	chr9	21626242	21627242	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357764, intron 1 of 34)	B2_Mm2|SINE|B2	10573.0	NM_001174078	20586.0	Mm.286593	NM_011417	ENSMUSG00000032187	Smarca4	BAF190A|Brg1|HP1-BP72|SNF2beta|SW1/SNF|b2b508.1Clo|b2b692Clo	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27186128-2	chr7	27185628	27186628	+	561.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_015782)	TTS (NM_015782)	-4979.0	NM_019394	12587.0	Mm.262447	NM_019394	ENSMUSG00000089661	Mia	CD-RAP|Cdrap|Mia1	melanoma inhibitory activity	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90595147-2	chr5	90594625	90595625	+	560.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252661, intron 13 of 13)	intron (NM_001252661, intron 13 of 13)	33916.0	NM_001252661	622307.0	Mm.389654	NM_001252661	ENSMUSG00000070690	5830473C10Rik	Arg|Gm17754	RIKEN cDNA 5830473C10 gene	protein-coding	8.5	0.0	0.0	4.5	8.5	0.0
Merged-chr18-74190233-3	chr18	74189738	74190738	+	560.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17580.0	NM_001164355	66468.0	Mm.283406	NM_025581	ENSMUSG00000036223	Ska1	2810433K01Rik|AV117428	spindle and kinetochore associated complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	3.5	0.0
Merged-chr1-65311539-2	chr1	65311039	65312039	+	560.75	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_139270, exon 1 of 13)	5' UTR (NM_139270, exon 1 of 13)	282.0	NM_139270	213527.0	Mm.294225	NM_139270	ENSMUSG00000025946	Pth2r	Pthr2	parathyroid hormone 2 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79319809-2	chr15	79319309	79320309	+	560.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_016915, intron 1 of 15)	MER44B|DNA|TcMar-Tigger	8562.0	NM_016915	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr8-49068101-2	chr8	49067601	49068601	+	560.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	(GGGAGA)n|Simple_repeat|Simple_repeat	-393411.0	NM_011857	23965.0	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4518706-3	chr7	4518195	4519195	+	560.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009406, intron 7 of 7)	intron (NM_009406, intron 7 of 7)	-2720.0	NM_011618	21955.0	Mm.358643	NM_011618	ENSMUSG00000064179	Tnnt1	AW146156|Tnt|sTnT|ssTnT	troponin T1, skeletal, slow	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34421289-3	chr19	34420736	34421736	+	560.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53899.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	30.5	48.5	21.5	15.0	11.5	8.0
Merged-chr19-4395014-2	chr19	4394514	4395514	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001984, intron 1 of 20)	intron (NM_001001984, intron 1 of 20)	2063.0	NM_001001984	225876.0	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-143585759-2	chr3	143585259	143586259	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	126384.0	NR_040405	621809.0	Mm.360134	NR_040405	ENSMUSG00000105279	Gm6260	EG621809	predicted gene 6260	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-13014365-2	chr17	13013865	13014865	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013671, intron 4 of 4)	intron (NM_013671, intron 4 of 4)	6526.0	NM_013671	20656.0	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-132022200-1	chr3	132021700	132022700	+	560.5	f1_c57bl6.idr	Intergenic	Intergenic	-63092.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	3.5	11.5	5.0	11.5	1.0	4.0
Merged-chr4-146497281-2	chr4	146496781	146497781	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR18A_MM|LTR|ERVK	-4719.0	NM_001243138	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58640519-2	chr13	58640019	58641019	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29642.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-133579979-2	chr3	133579479	133580479	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35589.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143584921-2	chr5	143584421	143585421	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	36215.0	NM_026050	67238.0	Mm.383219	NM_026050	ENSMUSG00000083012	Fam220a	1500026F15Rik|2810453I06Rik|AW047776|Acpin1|Sipar	family with sequence similarity 220, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21493903-2	chr9	21493403	21494403	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039520, intron 14 of 20)	intron (NM_001039520, intron 14 of 20)	2661.0	NR_029585	387194.0		NR_029585	ENSMUSG00000065547	Mir199a-1	Mirn199|Mirn199a-1|mir-199a-1	microRNA 199a-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143254357-2	chr5	143253857	143254857	+	560.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_017467, exon 7 of 7)	exon (NM_017467, exon 7 of 7)	15665.0	NM_017467	54201.0	Mm.6666	NM_017467	ENSMUSG00000046658	Zfp316	Emzf1|Mzf3|Znf316	zinc finger protein 316	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16103953-2	chr1	16103453	16104453	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011291, intron 1 of 6)	intron (NM_011291, intron 1 of 6)	480.0	NM_011291	19989.0	Mm.319659	NM_011291	ENSMUSG00000043716	Rpl7	Rpl7a|Surf-3	ribosomal protein L7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87927760-2	chr3	87927260	87928260	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153562, intron 2 of 7)	intron (NM_153562, intron 2 of 7)	2435.0	NM_153562	229503.0	Mm.296008	NM_153562	ENSMUSG00000004896	Rrnad1	-	ribosomal RNA adenine dimethylase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117944041-2	chr11	117943541	117944541	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	25325.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4151148-2	chr19	4150648	4151648	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011778, intron 6 of 10)	intron (NM_011778, intron 6 of 10)	2485.0	NM_011778	23789.0	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114617511-2	chr5	114617011	114618011	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40910.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-146520790-2	chr4	146520290	146521290	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045468, intron 2 of 2)	intron (NR_045468, intron 2 of 2)	5870.0	NM_001243139	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34201493-1	chr10	34200993	34201993	+	560.5	f0_balb.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	6058.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73435012-2	chr14	73434512	73435512	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49723.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12765118-2	chr13	12764618	12765618	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34940.0	NM_011954	26421.0	Mm.457984	NM_011954		Prl2c4	MRP-3|Mrpplf3|PLF-3|mrp/plf3	prolactin family 2, subfamily c, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45411383-2	chr9	45410883	45411883	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5306.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92394421-2	chr16	92393921	92394921	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019466, intron 3 of 3)	intron (NM_019466, intron 3 of 3)	5657.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-49745548-2	chr2	49745048	49746048	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008449, intron 21 of 25)	intron (NM_008449, intron 21 of 25)	-42138.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31063622-2	chr6	31063122	31064122	+	560.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029532)	promoter-TSS (NR_029532)	-529.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31037970-2	chr6	31037470	31038470	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	24777.0	NR_029744	387222.0		NR_029744	ENSMUSG00000065610	Mir29a	Mirn29a|mir-29a|mmu-mir-29a	microRNA 29a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53129167-2	chr4	53128667	53129667	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 3 of 49)	B3|SINE|B2	30728.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	16.5	11.0	9.0	2.0	6.5	11.0
Merged-chr3-51400808-2	chr3	51400308	51401308	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4261.0	NM_026358	67749.0	Mm.273339	NM_026358	ENSMUSG00000037161	Mgarp	4930583H14Rik|AI195347|CESP-1|HUMMR|Osap|Qsap	mitochondria localized glutamic acid rich protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23667433-2	chr11	23666933	23667933	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033654, intron 2 of 17)	intron (NM_001033654, intron 2 of 17)	1457.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-83926595-2	chr9	83926117	83927117	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305935, intron 1 of 10)	intron (NM_001305935, intron 1 of 10)	1480.0	NM_001305935	12040.0	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66098963-2	chr7	66098463	66099463	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10552.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-12037855-2	chr10	12037355	12038355	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	428631.0	NM_013898	30058.0	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13149096-2	chr8	13148596	13149596	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-10065.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53517285-2	chr19	53516785	53517785	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12033.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30954937-2	chr14	30954437	30955437	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308328, intron 2 of 13)	intron (NM_001308328, intron 2 of 13)	3560.0	NM_011849	23955.0	Mm.251494	NM_011849	ENSMUSG00000021918	Nek4	Stk2	NIMA (never in mitosis gene a)-related expressed kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-81537640-2	chr17	81537140	81538140	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	200747.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116309126-2	chr7	116308630	116309630	+	560.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305185)	promoter-TSS (NM_001305185)	-754.0	NM_001305185	233765.0	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111050093-2	chr9	111049593	111050593	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31_Mur|LTR|ERVK	7151.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115822745-2	chr11	115822245	115823245	+	560.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029557, exon 11 of 11)	3' UTR (NM_029557, exon 11 of 11)	-1313.0	NM_145438	217325.0	Mm.290450	NM_145438	ENSMUSG00000020782	Llgl2	9130006H11Rik|Llglh2	LLGL2 scribble cell polarity complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152109352-2	chr2	152108852	152109852	+	560.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029688, exon 2 of 2)	3' UTR (NM_029688, exon 2 of 2)	3828.0	NM_029688	76650.0	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-154156859-2	chr3	154156359	154157359	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081263, intron 1 of 21)	RSINE1|SINE|B4	173701.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62509467-2	chr4	62508967	62509967	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276446, intron 11 of 11)	intron (NM_001276446, intron 11 of 11)	-7267.0	NM_024257	72748.0	Mm.41506	NM_024257	ENSMUSG00000038422	Hdhd3	2810435D12Rik	haloacid dehalogenase-like hydrolase domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33899012-2	chr16	33898512	33899512	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 5 of 14)	intron (NM_001145884, intron 5 of 14)	68026.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21007723-2	chr11	21007223	21008223	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83601.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25623917-2	chr2	25623417	25624417	+	560.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007995)	TTS (NM_007995)	-1912.0	NM_001109993	51875.0	Mm.271147	NM_001040130	ENSMUSG00000026939	Tmem141	1110065P14Rik|AI663999|D2Ertd217e	transmembrane protein 141	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126573862-2	chr8	126573362	126574362	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19574.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.0	8.5	1.0	1.0	10.0	0.5
Merged-chr4-156050036-2	chr4	156049536	156050536	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029264, intron 2 of 14)	intron (NM_029264, intron 2 of 14)	781.0	NM_029264	330010.0	Mm.440232	NM_029264	ENSMUSG00000029074	Ttll10	4833412E22Rik|4930595O22Rik|AU022799|BC042775|Ttll5	tubulin tyrosine ligase-like family, member 10	protein-coding	4.5	1.5	0.0	5.5	1.5	0.0
Merged-chr4-57902416-2	chr4	57901916	57902916	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13848.0	NM_178727	242484.0	Mm.23214	NM_178727	ENSMUSG00000052117	D630039A03Rik	-	RIKEN cDNA D630039A03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5458399-2	chr17	5457899	5458899	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18139.0	NM_027457	70544.0	Mm.46654	NM_027457	ENSMUSG00000004945	Tmem242	1110008A10Rik|2310046K16Rik|5730437N04Rik	transmembrane protein 242	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124554683-2	chr5	124554183	124555183	+	560.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026409, exon 3 of 14)	exon (NM_026409, exon 3 of 14)	1819.0	NM_026409	67848.0	Mm.281601	NM_026409	ENSMUSG00000029389	Ddx55	2810021H22Rik|mKIAA1595	DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-34285430-2	chr9	34284930	34285930	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-203301.0	NM_026324	67703.0	Mm.220710	NM_026324	ENSMUSG00000032036	Kirrel3	1500010O20Rik|2900036G11Rik|NEPH2|SST4|mKIAA1867	kirre like nephrin family adhesion molecule 3	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr6-29275030-2	chr6	29274530	29275530	+	560.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023516, exon 2 of 2)	3' UTR (NM_023516, exon 2 of 2)	2404.0	NM_023516	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-174345915-2	chr2	174345415	174346415	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077507, intron 9 of 10)	intron (NM_001077507, intron 9 of 10)	15826.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-81578945-2	chr17	81578445	81579445	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	159442.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-48746600-2	chr10	48746100	48747100	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2A1|LINE|L1	1041337.0	NM_001358866	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80220992-2	chr17	80220492	80221492	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-3459.0	NM_026053	67242.0	Mm.279985	NM_026053	ENSMUSG00000055760	Gemin6	2610019B15Rik|2810470M17Rik	gem nuclear organelle associated protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-51764881-2	chr15	51764381	51765381	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100580.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65614706-2	chr17	65614206	65615206	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1151.0	NM_013933	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58132868-2	chr15	58132368	58133368	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027435, intron 1 of 27)	intron (NM_027435, intron 1 of 27)	2214.0	NM_027435	70472.0	Mm.221758	NM_027435	ENSMUSG00000022360	Atad2	2610509G12Rik	ATPase family, AAA domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86843171-2	chr12	86842671	86843671	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41643.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-109649296-2	chr7	109648796	109649796	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A1|LTR|ERVK	-32149.0	NM_029811	76954.0	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-79924206-2	chr7	79923706	79924706	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3566.0	NM_009682	11778.0	Mm.220173	NM_009682	ENSMUSG00000063801	Ap3s2	[s]3B	adaptor-related protein complex 3, sigma 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82979360-2	chr18	82978860	82979860	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183033, intron 2 of 5)	intron (NM_183033, intron 2 of 5)	-58800.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133888943-2	chr4	133888404	133889404	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1107.0	NM_009097	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	2.0	2.0	2.0	8.5	2.5	8.5
Merged-chr6-87981086-2	chr6	87980586	87981586	+	560.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_026990)	promoter-TSS (NR_026990)	396.0	NM_198622	243529.0	Mm.33796	NM_198622	ENSMUSG00000044927	H1fx	Gm461|H1.10|H1X	H1 histone family, member X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27957149-2	chr17	27956660	27957660	+	560.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	47854.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	21.5	12.5	1.5	3.0	5.0	1.5
Merged-chr2-4454778-2	chr2	4454278	4455278	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	53802.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20400315-2	chr14	20399815	20400815	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029698, intron 25 of 28)	intron (NM_029698, intron 25 of 28)	-6681.0	NM_025440	66242.0	Mm.23747	NM_025440	ENSMUSG00000049960	Mrps16	1500011E11Rik|Mprs16|S16mt	mitochondrial ribosomal protein S16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44410846-2	chr9	44410346	44411346	+	560.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_024266)	TTS (NM_024266)	3132.0	NM_024266	75617.0	Mm.292027	NM_024266	ENSMUSG00000009927	Rps25	2810009D21Rik	ribosomal protein S25	protein-coding	6.5	11.5	2.5	2.0	11.5	1.0
Merged-chr8-57654060-2	chr8	57653560	57654560	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040698, intron 1 of 3)	intron (NR_040698, intron 1 of 3)	-1005.0	NM_144731	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80409987-2	chr18	80409487	80410487	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 12 of 12)	intron (NM_026295, intron 12 of 12)	-45733.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	2.5	2.5	12.0	8.5	5.0	6.0
Merged-chr7-29125194-1	chr7	29124694	29125694	+	560.5	f0_c57.idr	promoter-TSS (NM_009109)	promoter-TSS (NM_009109)	-43.0	NM_009109	20190.0	Mm.439745	NM_009109	ENSMUSG00000030592	Ryr1	AI528790|RYR-1|Ryr|skrr	ryanodine receptor 1, skeletal muscle	protein-coding	0.0	1.0	1.0	0.0	3.0	2.0
Merged-chr15-81801754-2	chr15	81801254	81802254	+	560.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153484)	promoter-TSS (NM_153484)	859.0	NR_155271	100504312.0	Mm.384036	NR_155271	ENSMUSG00000097613	Gm17597	-	predicted gene, 17597	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83265477-2	chr17	83264977	83265977	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50194.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-7630464-2	chr15	7629964	7630964	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-179584.0	NM_010275	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-83682831-1	chr2	83682331	83683331	+	560.5	f0_c57.idr	Intergenic	Intergenic	38253.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	14.0	26.5	15.5	19.0	13.5	4.5
Merged-chr19-53308244-2	chr19	53307744	53308744	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2262.0	NM_001008542	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54864908-2	chr11	54864408	54865408	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-1475.0	NM_008248	15254.0	Mm.425	NM_008248	ENSMUSG00000020267	Hint1	AA673479|Hint|Ipk1|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181286149-2	chr2	181285649	181286649	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198169, intron 1 of 9)	MT2B|LTR|ERVL	1817.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111508786-2	chr10	111508286	111509286	+	560.416626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009344)	TTS (NM_009344)	2500.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99466547-2	chr7	99466041	99467041	+	560.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028145, intron 1 of 6)	intron (NM_028145, intron 1 of 6)	537.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	1.0	19.5	1.5	3.5	0.0	9.0
Merged-chr18-60735388-2	chr18	60734888	60735888	+	560.266663	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	-2247.0	NM_001348102	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	8.0	18.5	22.5	13.5	12.0	21.0
Merged-chr19-5808598-2	chr19	5808102	5809102	+	560.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5930.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34661164-2	chr17	34660710	34661710	+	560.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9325.0	NM_031176	81877.0	Mm.290527	NM_031176	ENSMUSG00000033327	Tnxb	Tn-mhc|Tnx	tenascin XB	protein-coding	6.0	0.0	0.0	3.0	0.0	0.0
Merged-chr16-4763465-2	chr16	4762965	4763965	+	560.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357050, intron 2 of 5)	intron (NM_001357050, intron 2 of 5)	6519.0	NM_001357050	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70622842-2	chr8	70622355	70623355	+	560.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVK26-int|LTR|ERVK	6011.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	7.5	10.0	10.5	4.5	14.5	9.0
Merged-chr15-97783758-2	chr15	97783258	97784258	+	560.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026353)	promoter-TSS (NM_026353)	-607.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156202506-1	chr2	156202006	156203006	+	560.0	f1_balb.idr	intron (NM_172674, intron 1 of 17)	intron (NM_172674, intron 1 of 17)	5859.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	4.0	31.5	29.0	9.5	32.0	33.5
Merged-chr16-38701532-1	chr16	38701032	38702032	+	560.0	f0_c57.idr	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	11503.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35249533-2	chr17	35249033	35250033	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019693, intron 6 of 10)	intron (NM_019693, intron 6 of 10)	-1756.0	NR_106169	102465886.0		NR_106169	ENSMUSG00000098269	Mir8094	Gm27513|mmu-mir-8094	microRNA 8094	ncRNA	4.5	17.0	6.0	0.0	9.0	4.5
Merged-chr9-48545816-2	chr9	48545316	48546316	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	50473.0	NM_001004191	434402.0	Mm.386950	NM_001004191	ENSMUSG00000042293	Gm5617	EG434402	predicted gene 5617	protein-coding	11.5	7.0	1.0	5.5	7.0	3.0
Merged-chr16-52044253-2	chr16	52043753	52044753	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 2 of 17)	intron (NM_001033238, intron 2 of 17)	12704.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-51016647-2	chr6	51016139	51017139	+	560.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	240524.0	NR_045984	319981.0	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75721737-1	chr2	75721237	75722237	+	560.0	f1_balb.idr	Intergenic	ID4|SINE|ID	-17074.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	5.0	10.0	4.5	2.5	10.5	4.0
Merged-chr10-99167878-2	chr10	99167378	99168378	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	B4|SINE|B4	59743.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165791277-1	chr2	165790777	165791777	+	560.0	f1_c57bl6.idr	intron (NM_027230, intron 22 of 23)	intron (NM_027230, intron 22 of 23)	66896.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr9-7223846-2	chr9	7223346	7224346	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39341.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49981059-2	chr16	49980559	49981559	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045001, intron 1 of 3)	intron (NR_045001, intron 1 of 3)	599.0	NR_045001	628951.0	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50806295-1	chr14	50805795	50806795	+	560.0	f1_c57bl6.idr	Intergenic	Intergenic	1476.0	NR_002142	85029.0		NR_002142	ENSMUSG00000092837	Rpph1	Gm24821|H1RNA|Rmrp5|Rpr	ribonuclease P RNA component H1	ncRNA	6.0	13.0	25.5	5.0	1.5	12.0
Merged-chr19-43671347-1	chr19	43670847	43671847	+	560.0	f1_balb.idr	intron (NM_145156, intron 1 of 3)	intron (NM_145156, intron 1 of 3)	3534.0	NM_145156	246696.0	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	32.5	38.0	27.5	7.0	25.0	8.0
Merged-chr14-114371930-2	chr14	114371430	114372430	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-460035.0	NR_045661	75822.0	Mm.410813	NR_045661	ENSMUSG00000115320	4930524C18Rik	-	RIKEN cDNA 4930524C18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73953045-1	chr12	73952545	73953545	+	560.0	f0_balb.idr	Intergenic	Intergenic	-11485.0	NM_178392	75627.0	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51807776-1	chr11	51807276	51808276	+	560.0	f1_balb.idr	Intergenic	B3A|SINE|B2	44113.0	NM_025535	66397.0	Mm.196592	NM_025535	ENSMUSG00000020386	Sar1b	2310075M17Rik|2900019I22Rik|CMRD|Sara1b|Sara2|Sarb	secretion associated Ras related GTPase 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4248468-2	chr18	4247968	4248968	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C-int|LTR|ERVK	82636.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7733558-2	chr9	7733058	7734058	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30519.0	NM_133739	71929.0	Mm.283293	NM_133739	ENSMUSG00000050912	Tmem123	2310075C12Rik	transmembrane protein 123	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55142641-2	chr14	55142141	55143141	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-25706.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51732308-2	chr13	51731808	51732808	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013660, intron 2 of 15)	intron (NM_013660, intron 2 of 15)	61439.0	NM_001281880	20354.0	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-96740657-1	chr2	96740157	96741157	+	560.0	f1_c57bl6.idr	intron (NM_001289742, intron 2 of 7)	RMER16_Mm|LTR|ERVK	422488.0	NM_001289743	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	8.0	16.5	3.5	1.5	0.0	2.0
Merged-chr11-86542203-2	chr11	86541703	86542703	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114334, intron 1 of 14)	intron (NM_001114334, intron 1 of 14)	2604.0	NM_028259	72508.0	Mm.394280	NM_028259	ENSMUSG00000020516	Rps6kb1	2610318I15Rik|4732464A07Rik|70kDa|AA959758|AI256796|AI314060|P70S6K1|S6K|S6K1|p70/85s6k|p70s6k	ribosomal protein S6 kinase, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88223294-1	chr1	88222794	88223794	+	560.0	f0_c57.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-3726.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121549845-1	chr10	121549345	121550345	+	560.0	f1_balb.idr	intron (NM_019786, intron 20 of 20)	intron (NM_019786, intron 20 of 20)	36949.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	2.0	3.0	3.5	1.0	0.0	0.0
Merged-chr3-108490185-1	chr3	108489685	108490685	+	560.0	f1_balb.idr	intron (NM_001358065, intron 1 of 20)	B2_Mm2|SINE|B2	-44926.0	NM_001204979	20226.0	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr10-128498104-2	chr10	128497604	128498604	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172259, intron 1 of 6)	intron (NM_172259, intron 1 of 6)	581.0	NM_172259	216459.0	Mm.291688	NM_172259	ENSMUSG00000039824	Myl6b	5730437E04Rik|BC037527|MLC1SA	myosin, light polypeptide 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139710047-1	chr5	139709547	139710547	+	560.0	f1_c57bl6.idr	intron (NM_174850, intron 12 of 16)	intron (NM_174850, intron 12 of 16)	26286.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr5-53570901-1	chr5	53570401	53571401	+	560.0	f0_balb.idr	intron (NM_001080928, intron 1 of 10)	intron (NM_001080928, intron 1 of 10)	15122.0	NM_001080928	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4139732-1	chr8	4139232	4140232	+	560.0	f1_balb.idr	Intergenic	Lx5|LINE|L1	4996.0	NM_027343	70192.0	Mm.390006	NM_027343	ENSMUSG00000079168	Cd209g	2310066I10Rik|AI481039|SIGNR7	CD209g antigen	protein-coding	7.5	6.5	3.5	1.0	0.0	7.0
Merged-chr9-113772542-2	chr9	113772042	113773042	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114347, intron 5 of 39)	intron (NM_001114347, intron 5 of 39)	-20788.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91648444-2	chr6	91647944	91648944	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35623.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49962425-3	chr16	49961925	49962925	+	560.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6595.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94041602-1	chr10	94041102	94042102	+	560.0	f0_c57.idr	intron (NM_053072, intron 1 of 20)	intron (NM_053072, intron 1 of 20)	5601.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	10.0	26.0	17.0	4.0	2.5	4.5
Merged-chr8-69715941-1	chr8	69715441	69716441	+	560.0	f1_balb.idr	intron (NM_001039967, intron 1 of 5)	intron (NM_001039967, intron 1 of 5)	961.0	NM_001039967	66869.0	Mm.334581	NM_181274	ENSMUSG00000054648	Zfp869	1200003I07Rik	zinc finger protein 869	protein-coding	98.5	250.0	220.0	70.0	231.5	210.0
Merged-chr1-36509168-2	chr1	36508668	36509668	+	560.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_033570)	TTS (NM_033570)	-2699.0	NM_001331209	94218.0	Mm.256323	NM_053186	ENSMUSG00000001138	Cnnm3	Acdp3|Clp3|mACDP3	cyclin M3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18252169-2	chr16	18251669	18252669	+	560.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001080999, exon 8 of 12)	exon (NM_001080999, exon 8 of 12)	3286.0	NM_001081000	15547.0	Mm.271798	NM_008307	ENSMUSG00000022721	Trmt2a	Htf9c	TRM2 tRNA methyltransferase 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13754573-2	chr8	13754073	13755073	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3083.0	NM_027276	69957.0	Mm.182412	NM_027276	ENSMUSG00000038416	Cdc16	2700071J12Rik|2810431D22Rik|APC6	CDC16 cell division cycle 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122816549-2	chr5	122816049	122817049	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042491, intron 4 of 16)	B1_Mm|SINE|Alu	4793.0	NM_021505	59008.0	Mm.332667	NM_021505	ENSMUSG00000029472	Anapc5	2510006G12Rik|AA408751|AA536819|AA986414|APC5|Anpc5	anaphase-promoting complex subunit 5	protein-coding	0.0	0.0	1.5	0.0	0.0	5.5
Merged-chr10-128439951-1	chr10	128439451	128440451	+	560.0	f1_balb.idr	non-coding (NR_104288, exon 7 of 7)	non-coding (NR_104288, exon 7 of 7)	-18729.0	NR_106183	102465894.0		NR_106183	ENSMUSG00000098957	Mir8105	Gm27346|mmu-mir-8105	microRNA 8105	ncRNA	5.0	0.0	0.0	6.0	0.0	7.5
Merged-chr11-68032612-2	chr11	68032112	68033112	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018768, intron 6 of 7)	intron (NM_018768, intron 6 of 7)	66154.0	NM_018768	55943.0	Mm.3973	NM_018768	ENSMUSG00000020903	Stx8	0610007H08Rik|1110002H11Rik|4930571E13Rik|CARB	syntaxin 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34525891-2	chr19	34525391	34526391	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021460, intron 1 of 9)	intron (NM_021460, intron 1 of 9)	1583.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	3.5	25.5	15.0	1.5	23.5	14.5
Merged-chr2-132248640-2	chr2	132248140	132249140	+	560.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001141971)	promoter-TSS (NM_001141971)	-852.0	NM_001141971	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-30800942-2	chr10	30800442	30801442	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 1 of 14)	B2_Mm2|SINE|B2	2384.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27650637-2	chr7	27650137	27651137	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3287.0	NM_028417	73032.0	Mm.44095	NM_028417	ENSMUSG00000007944	Ttc9b	2900074C18Rik	tetratricopeptide repeat domain 9B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29715796-1	chr11	29715296	29716296	+	560.0	f0_balb.idr	intron (NM_194054, intron 3 of 8)	intron (NM_194054, intron 3 of 8)	-2767.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	17.0	34.0	26.5	12.5	18.5	22.5
Merged-chr7-102333861-1	chr7	102333361	102334361	+	560.0	f0_balb.idr	intron (NM_009287, intron 1 of 11)	RMER6A|LTR|ERVK	66037.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	0.0	1.5	3.5	8.0	9.0	4.0
Merged-chr17-30499208-1	chr17	30498708	30499708	+	560.0	f1_balb.idr	intron (NM_172618, intron 6 of 11)	intron (NM_172618, intron 6 of 11)	77079.0	NM_172618	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	0.0	3.0	3.0	0.0	3.0	3.0
Merged-chr4-141315894-2	chr4	141315394	141316394	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010139, intron 3 of 16)	intron (NM_010139, intron 3 of 16)	14673.0	NM_010139	13836.0	Mm.2581	NM_010139	ENSMUSG00000006445	Epha2	AW545284|Eck|Myk2|Sek-2|Sek2	Eph receptor A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133759606-2	chr4	133759118	133760118	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6007.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	0.5	0.5	1.5	0.0	1.5	3.5
Merged-chr8-120801254-2	chr8	120800754	120801754	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62615.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-42612493-1	chr6	42611993	42612993	+	560.0	f0_balb.idr	Intergenic	Intergenic	-15121.0	NM_203396	403088.0	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88723910-1	chr10	88723410	88724410	+	560.0	f1_c57bl6.idr	Intergenic	Intergenic	7191.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-18470346-2	chr16	18469846	18470846	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001353143, intron 12 of 16)	intron (NM_001353143, intron 12 of 16)	-28367.0	NM_001081682	13972.0	Mm.236139	NM_023120	ENSMUSG00000000884	Gnb1l	ESTM55|Gm16314|Me49f07|Wdr14|Wdvcf	guanine nucleotide binding protein (G protein), beta polypeptide 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-183508043-1	chr1	183507543	183508543	+	560.0	f0_balb.idr	Intergenic	Intergenic	88795.0	NM_001308052	78772.0	Mm.29003	NM_030175	ENSMUSG00000053461	Hhipl2	4930507C10Rik|AW208802|Hhip3	hedgehog interacting protein-like 2	protein-coding	0.0	1.5	1.0	2.0	16.0	2.5
Merged-chr1-54663606-1	chr1	54663106	54664106	+	560.0	f1_balb.idr	intron (NM_001081433, intron 19 of 27)	(CAAAAA)n|Simple_repeat|Simple_repeat	-105922.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	1.5	3.5	1.0	0.5	0.0	1.5
Merged-chr6-38985115-1	chr6	38984615	38985615	+	560.0	f1_balb.idr	intron (NM_011539, intron 4 of 12)	intron (NM_011539, intron 4 of 12)	66129.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91262584-2	chr2	91262084	91263084	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028733, intron 6 of 10)	intron (NM_028733, intron 6 of 10)	-2531.0	NM_001166024	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24819928-2	chr13	24819428	24820428	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025790, intron 2 of 2)	intron (NM_025790, intron 2 of 2)	11561.0	NM_025790	66834.0	Mm.2125	NM_025790	ENSMUSG00000006717	Acot13	0610006O17Rik|Them2	acyl-CoA thioesterase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128133090-2	chr6	128132590	128133590	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175414, intron 1 of 8)	intron (NM_175414, intron 1 of 8)	10488.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	5.0	2.0	0.0	0.0	2.5	4.0
Merged-chr5-120888673-1	chr5	120888173	120889173	+	560.0	f1_c57bl6.idr	Intergenic	BGLII_B|LTR|ERVK	-1060.0	NR_126529	23960.0	Mm.389688	NM_011852	ENSMUSG00000066861	Oas1g	AI449562|L2|Mmu-L|Mmu-L2|Oas1b|Oias-1|Oias1	2'-5' oligoadenylate synthetase 1G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34231905-1	chr10	34231405	34232405	+	560.0	f0_balb.idr	Intergenic	Intergenic	-24354.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-7925643-2	chr15	7925143	7926143	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081402, intron 10 of 17)	intron (NM_001081402, intron 10 of 17)	110093.0	NM_001301357	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27657482-1	chr17	27656982	27657982	+	560.0	f1_balb.idr	intron (NM_001286744, intron 1 of 9)	intron (NM_001286744, intron 1 of 9)	1891.0	NM_001286743	23969.0	Mm.4926	NM_011861	ENSMUSG00000040276	Pacsin1	A830061D09Rik|H74|mKIAA1379|syndapin	protein kinase C and casein kinase substrate in neurons 1	protein-coding	0.0	1.0	0.0	1.0	0.0	1.5
Merged-chr10-110922184-1	chr10	110921684	110922684	+	560.0	f1_balb.idr	intron (NM_007792, intron 1 of 5)	intron (NM_007792, intron 1 of 5)	2008.0	NM_007792	13008.0	Mm.2020	NM_007792	ENSMUSG00000020186	Csrp2	AW551867|Crp2|SmLim	cysteine and glycine-rich protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-73323065-2	chr11	73322565	73323565	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023113, intron 1 of 5)	intron (NM_023113, intron 1 of 5)	1572.0	NM_023113	11484.0	Mm.293574	NM_023113	ENSMUSG00000020774	Aspa	Acy-2|Acy2|nur7	aspartoacylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46763693-1	chr8	46763193	46764193	+	560.0	f0_balb.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	23948.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46321890-1	chr19	46321390	46322390	+	560.0	f0_c57.idr	intron (NM_001347454, intron 6 of 17)	intron (NM_001347454, intron 6 of 17)	4976.0	NM_001347454	73728.0	Mm.268532	NM_028627	ENSMUSG00000037126	Psd	1110007H17Rik|A930015K15|Efa6|Efa6a|Psdl|mKIAA2011	pleckstrin and Sec7 domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-19917877-2	chr14	19917377	19918377	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285910, intron 1 of 2)	intron (NM_001285910, intron 1 of 2)	58816.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-27477925-2	chr16	27477425	27478425	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88969.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124033441-1	chr8	124032941	124033941	+	560.0	f0_balb.idr	intron (NM_001029876, intron 3 of 8)	intron (NM_001029876, intron 3 of 8)	9968.0	NM_001029876	382038.0	Mm.334891	NM_001029876	ENSMUSG00000031976	Urb2	C77575|mKIAA0133	URB2 ribosome biogenesis 2 homolog (S. cerevisiae)	protein-coding	4.0	16.0	1.5	1.5	4.5	6.5
Merged-chr14-59204320-2	chr14	59203820	59204820	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027764, intron 1 of 11)	intron (NM_027764, intron 1 of 11)	3092.0	NM_001360610	71330.0	Mm.234195	NM_027764	ENSMUSG00000035469	Rcbtb1	5430409I18Rik|AW111883|CLLD7|CLLL7	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146842087-2	chr5	146841587	146842587	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-2984.0	NM_026864	68895.0	Mm.266978	NM_026864	ENSMUSG00000029641	Rasl11a	1110065D03Rik|AI852031	RAS-like, family 11, member A	protein-coding	3.0	2.5	3.0	4.5	3.0	8.0
Merged-chr6-144256719-1	chr6	144256219	144257219	+	560.0	f1_c57bl6.idr	Intergenic	Intergenic	-47151.0	NM_001243163	20678.0	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-16549258-2	chr16	16548758	16549758	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	10961.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-85154427-2	chr10	85153927	85154927	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007771, intron 2 of 12)	B3|SINE|B2	-26400.0	NM_028832	74238.0	Mm.255401	NM_028832	ENSMUSG00000049038	Mterf2	1700007D05Rik|Mterfd3	mitochondrial transcription termination factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13302004-2	chr9	13301504	13302504	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55048.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-21623907-1	chr10	21623407	21624407	+	560.0	f0_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	30762.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-18059882-1	chr11	18059382	18060382	+	560.0	f0_c57.idr	Intergenic	RLTR11A|LTR|ERVK	-36104.0	NR_131129	327872.0		NR_131129	ENSMUSG00000085453	Gm12018	-	predicted gene 12018	ncRNA	0.0	18.5	14.5	3.0	7.0	1.0
Merged-chr18-12235291-2	chr18	12234745	12235745	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008720, intron 1 of 24)	intron (NM_008720, intron 1 of 24)	1141.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	14.5	23.0	19.0	8.0	16.5	6.0
Merged-chr18-56498563-1	chr18	56498063	56499063	+	560.0	f1_c57bl6.idr	intron (NM_001360917, intron 13 of 13)	intron (NM_001360917, intron 13 of 13)	-39576.0	NR_106160	102465790.0		NR_106160	ENSMUSG00000099196	Mir1258	Gm27371|mmu-mir-1258	microRNA 1258	ncRNA	7.5	0.0	0.5	4.5	0.0	1.5
Merged-chr15-76228906-1	chr15	76228406	76229406	+	560.0	f1_balb.idr	intron (NM_001163542, intron 1 of 33)	intron (NM_001163542, intron 1 of 33)	591.0	NM_201385	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-62762191-2	chr5	62761691	62762691	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	3986.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4891999-1	chr18	4891499	4892499	+	560.0	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	79513.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-116549530-2	chr2	116549030	116550030	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-329161.0	NM_001355572	67356.0	Mm.131623	NM_026104	ENSMUSG00000027355	Tmco5	1700095F04Rik|Tmco5a	transmembrane and coiled-coil domains 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19208589-1	chr7	19208089	19209089	+	560.0	f1_c57bl6.idr	Intergenic	Intergenic	-3949.0	NM_175668	319197.0	Mm.135984	NM_175668	ENSMUSG00000044317	Gpr4	-	G protein-coupled receptor 4	protein-coding	6.5	9.5	5.0	7.5	6.0	2.0
Merged-chr1-166940359-1	chr1	166939859	166940859	+	560.0	f0_c57.idr	Intergenic	IAPLTR2_Mm|LTR|ERVK	59371.0	NR_037988	100503962.0	Mm.216842	NR_037988	ENSMUSG00000102548	Gm16701	-	predicted gene, 16701	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-90683369-2	chr6	90682869	90683869	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356440, intron 3 of 13)	intron (NM_001356440, intron 3 of 13)	33160.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66080443-2	chr9	66079943	66080943	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-10712.0	NM_001025612	382083.0	Mm.477103	NM_001025612	ENSMUSG00000039452	Snx22	Gm1120	sorting nexin 22	protein-coding	6.0	0.0	1.0	0.0	0.0	1.5
Merged-chr16-20392524-2	chr16	20392024	20393024	+	560.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013790, exon 11 of 30)	exon (NM_013790, exon 11 of 30)	33870.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34543890-2	chr5	34543390	34544390	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145858, intron 1 of 12)	intron (NM_001145858, intron 1 of 12)	525.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21911065-2	chr16	21910565	21911565	+	560.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172821, exon 8 of 13)	exon (NM_172821, exon 8 of 13)	19096.0	NM_172821	71751.0	Mm.420837	NM_172821	ENSMUSG00000033618	Map3k13	C130026N12Rik|LZK	mitogen-activated protein kinase kinase kinase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-162670886-1	chr1	162670386	162671386	+	560.0	f1_c57bl6.idr	TTS (NM_001081290)	TTS (NM_001081290)	-12667.0	NM_001177581	100038657.0	Mm.416999	NM_001177581	ENSMUSG00000091060	Myocos	7420461P10Rik	myocilin opposite strand	protein-coding	3.0	5.0	7.0	0.0	0.0	0.5
Merged-chr19-43929942-1	chr19	43929442	43930442	+	560.0	f1_c57bl6.idr	intron (NM_028029, intron 1 of 15)	intron (NM_028029, intron 1 of 15)	10256.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	11.0	11.0	3.5	7.5	41.0	30.0
Merged-chr5-129017207-1	chr5	129016707	129017707	+	560.0	f1_balb.idr	Intergenic	B3|SINE|B2	-2949.0	NM_009391	19384.0	Mm.297440	NM_009391	ENSMUSG00000029430	Ran	-	RAN, member RAS oncogene family	protein-coding	4.5	4.0	1.0	7.0	1.0	2.0
Merged-chr15-91240477-1	chr15	91239977	91240977	+	560.0	f0_balb.idr	Intergenic	Intergenic	-48470.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78806034-1	chr11	78805534	78806534	+	560.0	f0_balb.idr	Intergenic	MIR|SINE|MIR	-20561.0	NM_001076681	66274.0	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21029944-2	chr14	21029444	21030444	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009502, intron 20 of 20)	intron (NM_009502, intron 20 of 20)	22498.0	NM_018829	55946.0	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76773486-2	chr11	76772986	76773986	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-9908.0	NM_001356321	53334.0	Mm.20931	NM_016810	ENSMUSG00000010392	Gosr1	AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28	golgi SNAP receptor complex member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114569723-2	chr11	114569223	114570223	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-98820.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75018270-2	chr11	75017770	75018770	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 10 of 18)	intron (NM_001002764, intron 10 of 18)	47721.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29771100-2	chr2	29770600	29771600	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	9572.0	NM_001177392	433416.0	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	-	predicted gene 13547	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-28976796-2	chr2	28976296	28977296	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166705, intron 3 of 5)	intron (NM_001166705, intron 3 of 5)	-60128.0	NM_001355434	54422.0	Mm.21390	NM_019446	ENSMUSG00000026805	Barhl1	Dres115|MBH2	BarH like homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148040104-2	chr2	148039604	148040604	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5360.0	NM_001291067	15376.0	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138028126-1	chr4	138027626	138028626	+	560.0	f0_balb.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	30301.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	2.0	3.5	4.0	17.5	16.0	12.0
Merged-chr11-117354337-2	chr11	117353837	117354837	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_017380, intron 5 of 9)	intron (NM_017380, intron 5 of 9)	22024.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149958831-1	chr4	149958331	149959331	+	560.0	f0_balb.idr	Intergenic	Intergenic	-3825.0	NM_029035	74646.0	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	1.5	1.5	0.0	0.0	2.0	1.5
Merged-chr11-120618856-2	chr11	120618356	120619356	+	560.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347615)	promoter-TSS (NM_001347615)	-911.0	NM_001347615	68671.0	Mm.21439	NM_024229	ENSMUSG00000025137	Pcyt2	1110033E03Rik|ET	phosphate cytidylyltransferase 2, ethanolamine	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-4787178-2	chr1	4786678	4787678	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1452.0	NM_025300	27395.0	Mm.182927	NM_025300	ENSMUSG00000033845	Mrpl15	HSPC145|MRP-L7|Rpml7	mitochondrial ribosomal protein L15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-49691351-1	chr15	49690851	49691851	+	560.0	f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-899362.0	NM_001081391	239420.0	Mm.309363	NM_001081391	ENSMUSG00000022311	Csmd3	4930500N14Rik|mKIAA1894	CUB and Sushi multiple domains 3	protein-coding	0.0	0.0	0.0	1.5	0.0	2.0
Merged-chr11-121753198-1	chr11	121752698	121753698	+	560.0	f0_balb.idr	Intergenic	L1MEg|LINE|L1	50771.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76332368-1	chr14	76331868	76332868	+	560.0	f0_c57.idr	Intergenic	Intergenic	80906.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-13866508-1	chr3	13866008	13867008	+	560.0	f0_balb.idr	intron (NM_001357034, intron 2 of 7)	intron (NM_001357034, intron 2 of 7)	-79797.0	NM_001163329	76897.0	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108718333-2	chr6	108717833	108718833	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57399.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127831525-2	chr2	127831025	127832025	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009772, intron 1 of 24)	CpG	334.0	NM_001113179	12235.0	Mm.2185	NM_009772	ENSMUSG00000027379	Bub1	AL022991|Bub1a|C80208|D2Xrf87	BUB1, mitotic checkpoint serine/threonine kinase	protein-coding	0.0	0.0	1.0	1.0	0.5	2.5
Merged-chr11-8684546-2	chr11	8684046	8685046	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20011.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	1.5	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98364700-2	chr11	98364200	98365200	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021547, intron 1 of 14)	intron (NM_021547, intron 1 of 14)	6332.0	NM_021547	59045.0	Mm.265546	NM_021547	ENSMUSG00000018167	Stard3	Mln64|es64	START domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25376783-2	chr7	25376283	25377283	+	560.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073028)	promoter-TSS (NR_073028)	-36.0	NR_073028	654804.0	Mm.389841	NM_001039540	ENSMUSG00000053714	4732471J01Rik	-	RIKEN cDNA 4732471J01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5819377-1	chr11	5818877	5819877	+	560.0	f1_c57bl6.idr	Intergenic	RLTR16|LTR|ERVK	-15581.0	NM_018870	56012.0	Mm.219627	NM_018870	ENSMUSG00000020475	Pgam2	-	phosphoglycerate mutase 2	protein-coding	0.5	1.0	1.5	0.0	0.0	0.0
Merged-chr1-172523999-1	chr1	172523499	172524499	+	560.0	f1_c57bl6.idr	intron (NM_027972, intron 1 of 11)	RMER19B|LTR|ERVK	2869.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	0.0	5.0	0.0	2.5	0.0	0.0
Merged-chr7-45469153-2	chr7	45468653	45469653	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2255.0	NM_007527	12028.0	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46498582-1	chr4	46498082	46499082	+	560.0	f1_c57bl6.idr	intron (NM_053179, intron 2 of 5)	intron (NM_053179, intron 2 of 5)	9253.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76341267-2	chr12	76340767	76341767	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16376.0	NM_001101471	238276.0	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-9425982-2	chr5	9425482	9426482	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153371, intron 8 of 21)	intron (NR_153371, intron 8 of 21)	50278.0	NR_030537	100124492.0		NR_030537	ENSMUSG00000077896	Mir879	Mirn879|mir-879|mmu-mir-879	microRNA 879	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134782879-1	chr1	134782379	134783379	+	560.0	f0_balb.idr	intron (NM_001081307, intron 18 of 23)	intron (NM_001081307, intron 18 of 23)	20842.0	NR_015606	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-21129628-3	chr12	21129143	21130143	+	559.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004364, intron 1 of 26)	intron (NM_001004364, intron 1 of 26)	17887.0	NM_001135192	211914.0	Mm.358946	NM_001004364	ENSMUSG00000052632	Asap2	6530401G17Rik|Ddef2|Gm1523|Gm592|PAG3|PAP	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	protein-coding	5.0	0.0	3.5	2.5	0.0	0.0
Merged-chr2-79055615-2	chr2	79055144	79056144	+	559.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	185966.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123600640-2	chr8	123600140	123601140	+	559.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TGGA)n|Simple_repeat|Simple_repeat	-34553.0	NR_046140	100861488.0		NR_046140	ENSMUSG00000094916	Gm26391	Rn5s17	predicted gene, 26391	rRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99626495-3	chr12	99625981	99626981	+	559.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045288, intron 1 of 1)	B1F2|SINE|Alu	1493.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70502713-3	chr9	70502141	70503141	+	559.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_001357494, intron 2 of 14)	intron (NM_001357494, intron 2 of 14)	737.0	NM_001357494	93836.0	Mm.29783	NM_033604	ENSMUSG00000032217	Rnf111	ARK|Arkadia	ring finger 111	protein-coding	36.5	94.0	101.0	32.5	73.5	85.0
Merged-chr2-120126577-2	chr2	120126077	120127077	+	559.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 3 of 5)	intron (NM_133838, intron 3 of 5)	27998.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81346036-2	chr7	81345536	81346536	+	559.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009092)	promoter-TSS (NM_009092)	-802.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-147823422-2	chr2	147822922	147823922	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A|LTR|ERVK	112729.0	NR_046014	381384.0	Mm.259809	NR_046014	ENSMUSG00000051986	A530006G24Rik	Gm1003	RIKEN cDNA A530006G24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35165081-2	chr7	35164581	35165581	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21304.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	1.5	4.5	0.0	0.0	0.0	0.0
Merged-chr2-144280830-2	chr2	144280330	144281330	+	559.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001289630, exon 5 of 5)	3' UTR (NM_001289630, exon 5 of 5)	9926.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-96120215-2	chr16	96119715	96120715	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7510.0	NM_008251	15312.0	Mm.2756	NM_008251	ENSMUSG00000040681	Hmgn1	HMG-14|Hmg14	high mobility group nucleosomal binding domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55741235-2	chr14	55740735	55741735	+	559.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026819, exon 5 of 9)	exon (NM_026819, exon 5 of 9)	4449.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-28576955-2	chr6	28576455	28577455	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 10 of 23)	intron (NM_019776, intron 10 of 23)	96607.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23985707-2	chr17	23985207	23986207	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C2|LTR|ERVK	-10477.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	1.0	0.0	3.5	0.0	0.0	2.5
Merged-chr15-9565195-2	chr15	9564695	9565695	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-35319.0	NM_008372	16197.0	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-57454193-2	chr2	57453693	57454693	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	215811.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72833203-2	chr5	72832703	72833703	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 1 of 17)	intron (NM_013689, intron 1 of 17)	35245.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45477216-2	chr7	45476716	45477716	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027903, intron 5 of 6)	intron (NM_027903, intron 5 of 6)	-9046.0	NM_001290996	56734.0	Mm.439742	NM_008807	ENSMUSG00000023467	Tulp2	Pdet	tubby-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110398707-2	chr12	110398207	110399207	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48472.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5690253-2	chr17	5689753	5690753	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 3 of 8)	B3|SINE|B2	-108404.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-19420868-2	chr17	19420368	19421368	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	58733.0	NM_001104551	665376.0	Mm.469859	NM_001104551	ENSMUSG00000090304	Vmn2r99	EG665376	vomeronasal 2, receptor 99	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13257492-2	chr16	13256992	13257992	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122667, intron 1 of 16)	intron (NM_001122667, intron 1 of 16)	1011.0	NM_001122667	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32179320-2	chr19	32178820	32179820	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	31693.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-83771269-2	chr2	83770769	83771769	+	559.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008402, exon 12 of 30)	exon (NM_008402, exon 12 of 30)	-41459.0	NM_175514	241520.0	Mm.330351	NM_175514	ENSMUSG00000048388	Fam171b	D430039N05Rik	family with sequence similarity 171, member B	protein-coding	0.0	2.5	1.0	0.0	3.0	0.5
Merged-chr11-79624407-2	chr11	79623907	79624907	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175543, intron 3 of 14)	intron (NM_175543, intron 3 of 14)	-1244.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129459221-2	chr4	129458721	129459721	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS_Mus|LTR|ERV1	-2458.0	NM_133889	100383.0	Mm.17918	NM_133889	ENSMUSG00000040859	Bsdc1	1110063F24Rik|AW011758	BSD domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38074721-2	chr15	38074208	38075208	+	559.5	f0_balb.idr|f1_balb.idr	intron (NM_001112721, intron 1 of 58)	intron (NM_001112721, intron 1 of 58)	4146.0	NM_001112721	70790.0	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-71837709-2	chr16	71837209	71838209	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVL-int|LTR|ERVL	396618.0	NR_131116	319533.0	Mm.373754	NR_131115		8030451O07Rik	-	RIKEN cDNA 8030451O07 gene	ncRNA	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr19-56396680-2	chr19	56396180	56397180	+	559.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007611)	promoter-TSS (NM_007611)	-449.0	NM_007611	12369.0	Mm.35687	NM_007611	ENSMUSG00000025076	Casp7	AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7	caspase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-33213210-2	chr5	33212710	33213710	+	559.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133903)	TTS (NM_133903)	5028.0	NM_133903	100689.0	Mm.34694	NM_133903	ENSMUSG00000037379	Spon2	2310045I24Rik|AI504350|M-spondin|Mindin|Mspondin	spondin 2, extracellular matrix protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113797003-2	chr5	113796503	113797503	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146162, intron 1 of 1)	intron (NM_146162, intron 1 of 1)	3349.0	NM_146162	231633.0	Mm.41681	NM_146162	ENSMUSG00000054675	Tmem119	AW208946|BC025600|obif	transmembrane protein 119	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29917543-2	chr6	29917043	29918043	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037740, intron 1 of 20)	intron (NM_001037740, intron 1 of 20)	530.0	NM_001037740	320609.0	Mm.56097	NM_177204	ENSMUSG00000039629	Strip2	D330017J20Rik|Fam40b	striatin interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-3085451-2	chr17	3084951	3085951	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1268.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-30471802-2	chr15	30471302	30472302	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 2 of 21)	intron (NM_001355502, intron 2 of 21)	299209.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33908392-2	chr17	33907892	33908892	+	559.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045146, exon 2 of 2)	non-coding (NR_045146, exon 2 of 2)	786.0	NR_045146	407803.0	Mm.250393	NR_045146	ENSMUSG00000092564	BC051226	-	cDNA sequence BC051226	ncRNA	27.5	24.5	28.0	16.0	33.5	11.0
Merged-chr8-26688414-2	chr8	26687914	26688914	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136009.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	5.0	6.5	5.0	2.5	3.0	0.0
Merged-chr4-154188671-2	chr4	154188171	154189171	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162977, intron 3 of 36)	intron (NM_001162977, intron 3 of 36)	17958.0	NM_001162977	230971.0	Mm.275216	NM_172273	ENSMUSG00000057751	Megf6	2600001P17Rik|Egfl3	multiple EGF-like-domains 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124736566-2	chr6	124736066	124737066	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077705, intron 1 of 15)	intron (NM_001077705, intron 1 of 15)	2143.0	NM_001077705	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	27.5	39.5	45.0	6.0	50.5	29.0
Merged-chr5-72225710-2	chr5	72225210	72226210	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 1 of 22)	intron (NR_003966, intron 1 of 22)	22367.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144700937-2	chr3	144700437	144701437	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 6 of 10)	B4A|SINE|B4	19398.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142373480-2	chr7	142373004	142374004	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347541, intron 1 of 2)	intron (NM_001347541, intron 1 of 2)	242.0	NM_001347541	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	12.0	23.5	25.5	6.5	4.0	5.5
Merged-chr15-36893921-2	chr15	36893421	36894421	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96992.0	NM_001253806	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44508969-2	chr9	44508469	44509469	+	559.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_030256, exon 9 of 9)	exon (NM_030256, exon 9 of 9)	9833.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123650370-2	chr4	123649870	123650870	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-15511.0	NR_136925	102633214.0	Mm.399387	NR_136925		Gm12925	-	predicted gene 12925	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121700912-2	chr11	121700412	121701412	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1515.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91928071-2	chr16	91927571	91928571	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138597, intron 3 of 6)	intron (NM_138597, intron 3 of 6)	3559.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79576902-2	chr3	79576402	79577402	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8710.0	NR_152118	75879.0	Mm.410800	NR_152118		4930589L23Rik	-	RIKEN cDNA 4930589L23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-57753111-2	chr9	57752611	57753611	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007713, intron 9 of 12)	B2_Mm2|SINE|B2	12749.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128691254-2	chr4	128690754	128691754	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 1 of 14)	intron (NM_018774, intron 1 of 14)	2516.0	NM_018774	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-23494815-2	chr11	23494315	23495315	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172391, intron 3 of 8)	intron (NM_172391, intron 3 of 8)	3224.0	NM_001290655	268390.0	Mm.13148	NM_172391	ENSMUSG00000020288	Ahsa2	-	AHA1, activator of heat shock protein ATPase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-140172175-2	chr4	140171675	140172675	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198610, intron 1 of 9)	intron (NM_198610, intron 1 of 9)	29302.0	NR_153821	102636673.0	Mm.449180	NR_153821		Gm13029	Gm33676	predicted gene 13029	ncRNA	16.5	19.5	3.0	0.0	5.0	2.0
Merged-chr6-57744962-2	chr6	57744462	57745462	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42507.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148153420-2	chr4	148152917	148153917	+	559.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001355702)	TTS (NM_001355702)	-1282.0	NM_001163707	50762.0	Mm.27445	NM_015797	ENSMUSG00000055401	Fbxo6	AA408845|FBG2|Fbs2|Fbx6b|Fbxo6b	F-box protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-8310647-2	chr14	8310147	8311147	+	559.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183187)	promoter-TSS (NM_183187)	-868.0	NM_001360338	268709.0	Mm.256058	NM_183187	ENSMUSG00000021750	Fam107a	DRR1	family with sequence similarity 107, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67163957-2	chr18	67163457	67164457	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177137, intron 4 of 11)	MTE2b|LTR|ERVL-MaLR	30397.0	NM_010307	14680.0	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding	0.5	0.0	1.0	1.5	0.5	1.0
Merged-chr18-82857721-2	chr18	82857221	82858221	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_125720, intron 2 of 2)	intron (NR_125720, intron 2 of 2)	1824.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-48868777-2	chr13	48868277	48869277	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011078, intron 1 of 21)	intron (NM_011078, intron 1 of 21)	2108.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97992577-2	chr3	97992077	97993077	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20961.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103345510-1	chr2	103345010	103346010	+	559.5	f0_balb.idr	intron (NR_040332, intron 1 of 2)	intron (NR_040332, intron 1 of 2)	27254.0	NR_040332	319854.0	Mm.403818	NR_040332	ENSMUSG00000087278	A930006I01Rik	-	RIKEN cDNA A930006I01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35778135-2	chr16	35777635	35778635	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152314, intron 1 of 8)	B4A|SINE|B4	7749.0	NM_175111	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	13.5	0.5	5.5	13.5	0.5	3.5
Merged-chr5-108692891-2	chr5	108692391	108693391	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1338.0	NM_001164259	116701.0	Mm.35691	NM_054071	ENSMUSG00000008090	Fgfrl1	FGFR5|FGFR5beta|FGFR5gamma	fibroblast growth factor receptor-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82865542-2	chr11	82865042	82866042	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164569, intron 1 of 7)	intron (NM_001164569, intron 1 of 7)	5202.0	NM_001164570	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60820148-2	chr2	60819648	60820648	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	61290.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-79683131-2	chr1	79682631	79683631	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-11159.0	NM_183027	252903.0	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	1.0	4.0	2.5	1.0	4.0	2.5
Merged-chr19-10830851-2	chr19	10830351	10831351	+	559.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037801)	promoter-TSS (NM_001037801)	-793.0	NM_009852	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38000057-2	chr18	37999557	38000557	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1088.0	NM_001205336	106952.0	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	0.0	5.0	0.0	1.5	4.0	7.5
Merged-chr7-31055220-2	chr7	31054720	31055720	+	559.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_052991)	promoter-TSS (NM_052991)	-367.0	NM_194321	56188.0	Mm.1491	NM_019503	ENSMUSG00000036570	Fxyd1	0610012C17Rik|1110006M24Rik|Plm|Pml	FXYD domain-containing ion transport regulator 1	protein-coding	0.0	1.0	0.0	0.0	1.0	0.0
Merged-chr9-119103949-2	chr9	119103449	119104449	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177117, intron 1 of 36)	intron (NM_177117, intron 1 of 36)	1471.0	NM_177117	320256.0	Mm.110648	NM_177117	ENSMUSG00000038060	Dlec1	D630005C06Rik	deleted in lung and esophageal cancer 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-146816330-2	chr5	146815830	146816830	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16560.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	0.5	1.0	3.0	0.5	2.5	1.5
Merged-chr11-94475078-2	chr11	94474578	94475578	+	559.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001112813)	promoter-TSS (NM_001112813)	-880.0	NM_001112813	12291.0	Mm.29585	NM_009783	ENSMUSG00000020866	Cacna1g	Cav3.1d|[a]1G|a1G|alpha-1G|mKIAA1123	calcium channel, voltage-dependent, T type, alpha 1G subunit	protein-coding	0.0	0.0	6.0	0.0	0.0	0.0
Merged-chr15-6407420-2	chr15	6406920	6407920	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	20672.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60752347-2	chr13	60751847	60752847	+	559.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001285917, exon 23 of 27)	exon (NM_001285917, exon 23 of 27)	34017.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	1.0	0.0	0.0	0.0	3.0	0.0
Merged-chr17-84791998-2	chr17	84791498	84792498	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-1212.0	NM_028233	72416.0	Mm.217027	NM_028233	ENSMUSG00000024120	Lrpprc	3110001K13Rik|C76645|Gp130|Lrp130|Lsfc	leucine-rich PPR-motif containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-13770189-2	chr1	13769689	13770689	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	16740.0	NR_004447	433273.0	Mm.304088	NR_004447	ENSMUSG00000097711	Gm5523	EG433273	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84468817-2	chr12	84468317	84469317	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173756, intron 5 of 5)	intron (NM_173756, intron 5 of 5)	17309.0	NM_173756	217708.0	Mm.311904	NM_173756	ENSMUSG00000085793	Lin52	5830457H20Rik	lin-52 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-67713575-2	chr14	67713075	67714075	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175384, intron 3 of 14)	intron (NM_175384, intron 3 of 14)	2035.0	NM_001110162	108912.0	Mm.33831	NM_175384	ENSMUSG00000048922	Cdca2	2610311M19Rik|AI586158	cell division cycle associated 2	protein-coding	4.5	1.5	0.5	0.0	0.5	0.0
Merged-chr1-89551992-2	chr1	89551492	89552492	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	97181.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81236276-2	chr10	81235776	81236776	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034895, intron 1 of 17)	MTC|LTR|ERVL-MaLR	3113.0	NM_001034895	103406.0	Mm.158783	NM_001034895	ENSMUSG00000034949	Zfr2	2010013I23Rik|9130206N08Rik|AW045600|mKIAA1086	zinc finger RNA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-114932175-2	chr13	114931675	114932675	+	559.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008396)	promoter-TSS (NM_008396)	-75.0	NM_008396	16398.0	Mm.5007	NM_008396	ENSMUSG00000015533	Itga2	CD49B|DX5|GPIa	integrin alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100589878-2	chr7	100589378	100590378	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_003559, intron 1 of 7)	intron (NR_003559, intron 1 of 7)	1536.0	NR_153425	52443.0	Mm.473730	NM_198831	ENSMUSG00000030706	Mrpl48	1810030E20Rik|2610028L11Rik|CGI-118|D4Ertd786e|L48mt|MRP-L48	mitochondrial ribosomal protein L48	protein-coding	5.5	18.5	11.0	5.5	18.5	11.0
Merged-chr4-126130986-2	chr4	126130486	126131486	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 6 of 10)	intron (NM_028800, intron 6 of 10)	-17017.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141383399-2	chr7	141382899	141383899	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-8761.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3674230-3	chr12	3673730	3674730	+	559.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 8 of 17)	intron (NM_001162465, intron 8 of 17)	101246.0	NM_007886	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-79594989-3	chr7	79594507	79595507	+	559.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019799, intron 9 of 10)	intron (NM_019799, intron 9 of 10)	22650.0	NM_019799	56315.0	Mm.10909	NM_019799	ENSMUSG00000030549	Rhcg	BB065800	Rhesus blood group-associated C glycoprotein	protein-coding	0.0	2.5	0.0	0.0	0.0	0.0
Merged-chr11-8716990-3	chr11	8716518	8717518	+	559.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52483.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-97441984-3	chr13	97441433	97442433	+	559.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110432, intron 1 of 1)	intron (NR_110432, intron 1 of 1)	6963.0	NR_110432	100039691.0	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-16984741-2	chr11	16984241	16985241	+	559.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 7 of 9)	RMER13B|LTR|ERVK	23977.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12130313-4	chr18	12129825	12130825	+	559.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024182, intron 1 of 12)	intron (NM_024182, intron 1 of 12)	1475.0	NM_024182	66878.0	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	18.5	19.0	16.0	19.0	15.0	13.5
Merged-chr10-128503632-1	chr10	128503132	128504132	+	559.0	f1_c57bl6.idr	non-coding (NR_131150, exon 3 of 3)	non-coding (NR_131150, exon 3 of 3)	4385.0	NR_131151	654440.0	Mm.441262	NR_131150	ENSMUSG00000097353	A430046D13Rik	-	Riken cDNA A430046D13 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-146405054-1	chr6	146404554	146405554	+	559.0	f1_c57bl6.idr	intron (NM_019923, intron 10 of 56)	intron (NM_019923, intron 10 of 56)	97169.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	0.0	8.5	1.0	4.0	6.0	1.0
Merged-chr10-80368008-1	chr10	80367508	80368508	+	559.0	f0_balb.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	1629.0	NR_038088	100568459.0		NR_038088	ENSMUSG00000115783	Bc1	Gm24367	brain cytoplasmic RNA 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-74372910-2	chr1	74372410	74373410	+	559.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-2293.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28333769-2	chr17	28333269	28334269	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001098226, intron 9 of 12)	intron (NM_001098226, intron 9 of 12)	5204.0	NM_001357628	19896.0	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26696268-1	chr8	26695768	26696768	+	559.0	f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	128155.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	92.5	193.5	175.0	59.0	190.0	110.5
Merged-chr3-54276148-1	chr3	54275648	54276648	+	559.0	f1_c57bl6.idr	intron (NM_001253682, intron 4 of 11)	MTA_Mm|LTR|ERVL-MaLR	-84959.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-60734494-2	chr11	60733994	60734994	+	559.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	5831.0	NR_039559	100628625.0		NR_039559	ENSMUSG00000092734	Mir5100	mir-5100|mmu-mir-5100|mu-mir-5100	microRNA 5100	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-50786698-1	chr19	50786198	50787198	+	559.0	f1_balb.idr	Intergenic	Lx5b|LINE|L1	-108052.0	NM_001290356	58178.0	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding	1.5	0.0	2.5	1.0	5.5	0.5
Merged-chr8-88642110-1	chr8	88641610	88642610	+	559.0	f1_balb.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	-5237.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	9.0	0.0	3.0	0.0	1.0	0.5
Merged-chr12-84567796-1	chr12	84567296	84568296	+	559.0	f0_balb.idr	Intergenic	B4|SINE|B4	-2032.0	NM_007701	12677.0	Mm.4405	NM_007701	ENSMUSG00000021239	Vsx2	Chx10|Hox-10|Hox10|or	visual system homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-90856578-1	chr8	90856078	90857078	+	559.0	f0_balb.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	27743.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	1.0	7.0	3.5	0.0	14.5	14.0
Merged-chr16-4752844-2	chr16	4752344	4753344	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010443, intron 1 of 5)	PB1D7|SINE|Alu	-4102.0	NM_001357050	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49471110-2	chr7	49470610	49471610	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 10 of 37)	intron (NM_175272, intron 10 of 37)	165725.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60836707-2	chr2	60836207	60837207	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	44731.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8577005-1	chr11	8576505	8577505	+	559.0	f1_balb.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	87530.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	10.0	32.5	24.5	12.0	53.0	40.5
Merged-chr9-115312649-1	chr9	115312149	115313149	+	559.0	f1_c57bl6.idr	Intergenic	Intergenic	-2228.0	NM_024222	68292.0	Mm.296158	NM_024222	ENSMUSG00000032437	Stt3b	1300006C19Rik|Simp	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	protein-coding	8.0	4.0	1.5	3.0	7.5	0.5
Merged-chr3-101845079-2	chr3	101844579	101845579	+	559.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-8856.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64257167-1	chr13	64256667	64257667	+	559.0	f0_balb.idr	intron (NR_045798, intron 1 of 2)	ORR1B1|LTR|ERVL-MaLR	8467.0	NR_045798	66503.0	Mm.443331	NR_045798	ENSMUSG00000097101	1810034E14Rik	-	RIKEN cDNA 1810034E14 gene	ncRNA	7.5	0.0	0.5	4.5	10.5	2.5
Merged-chr11-79294737-1	chr11	79294237	79295237	+	559.0	f1_balb.idr	Intergenic	B1_Mus2|SINE|Alu	-40042.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	3.0	0.0	1.5	1.5	7.5	0.5
Merged-chr10-36304103-1	chr10	36303603	36304603	+	559.0	f1_balb.idr	Intergenic	Intergenic	-202704.0	NM_001253355	319415.0	Mm.332442	NM_001081208	ENSMUSG00000044499	Hs3st5	D930005L05Rik|Gm1151|Hs3ost5	heparan sulfate (glucosamine) 3-O-sulfotransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43524878-1	chr4	43524378	43525378	+	559.0	f1_c57bl6.idr	Intergenic	Intergenic	-1324.0	NM_001277875	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	5.5	4.0	4.0	1.0	5.5	3.0
Merged-chr5-124473464-2	chr5	124472964	124473964	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030259, intron 1 of 3)	intron (NM_030259, intron 1 of 3)	4771.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-64510058-2	chr4	64509558	64510558	+	559.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-233455.0	NR_151546	102633436.0	Mm.411637	NR_151546		Gm11217	-	predicted gene 11217	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-20648465-2	chr2	20647965	20648965	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177630, intron 2 of 17)	intron (NM_001177630, intron 2 of 17)	128952.0	NM_001177631	208618.0	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-86931174-1	chr4	86930674	86931674	+	559.0	f1_c57bl6.idr	intron (NM_001290543, intron 5 of 5)	L1Md_F|LINE|L1	56760.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	1.0	0.5	4.0	0.0	0.0	2.5
Merged-chr5-103995292-2	chr5	103994792	103995792	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053262, intron 5 of 6)	MLTR18D_MM|LTR|ERVK	-17904.0	NM_001163486	243168.0	Mm.284944	NM_198030	ENSMUSG00000034528	Hsd17b13	AI047820|PAN1B-like|Pan1b	hydroxysteroid (17-beta) dehydrogenase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128165812-2	chr10	128165312	128166312	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039080, intron 2 of 13)	B2_Mm1a|SINE|B2	10756.0	NM_019711	56516.0	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-57300664-2	chr2	57300164	57301164	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010274, intron 3 of 16)	intron (NM_010274, intron 3 of 16)	62282.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73931485-2	chr12	73930985	73931985	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313919, intron 5 of 14)	B2_Mm2|SINE|B2	23618.0	NM_001313919	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166689888-2	chr2	166689388	166690388	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	23944.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-99170485-1	chr13	99169985	99170985	+	559.0	f1_balb.idr	Intergenic	Intergenic	-14338.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30630102-1	chr14	30629602	30630602	+	559.0	f1_balb.idr	Intergenic	Intergenic	-3894.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-75798637-1	chr13	75798137	75799137	+	559.0	f1_balb.idr	Intergenic	Intergenic	-41248.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	11.5	0.5	0.0	5.0	6.0	8.5
Merged-chr13-18028468-1	chr13	18027968	18028968	+	559.0	f1_balb.idr	Intergenic	Intergenic	-35117.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-75732126-2	chr12	75731626	75732626	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030750, intron 1 of 2)	B2_Mm2|SINE|B2	3603.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84083530-2	chr18	84083030	84084030	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081300, intron 1 of 1)	intron (NM_001081300, intron 1 of 1)	3032.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10520866-2	chr16	10520366	10521366	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007575, intron 14 of 18)	intron (NM_007575, intron 14 of 18)	22188.0	NM_021428	58239.0	Mm.353006	NM_021428	ENSMUSG00000038055	Dexi	1810029J14Rik|AI836170|AW413143|D16Bwg0586e|Myle	dexamethasone-induced transcript	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83443903-2	chr11	83443403	83444403	+	559.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001320300, exon 7 of 8)	exon (NM_001320300, exon 7 of 8)	6209.0	NM_025492	66330.0	Mm.44800	NM_025492	ENSMUSG00000035085	1700020L24Rik	-	RIKEN cDNA 1700020L24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-108229593-2	chr11	108229093	108230093	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	114295.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0.0	1.5	1.0	1.0	0.0	0.5
Merged-chr3-115799766-1	chr3	115799266	115800266	+	559.0	f0_balb.idr	Intergenic	URR1A|DNA|hAT-Charlie	-84711.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139211105-1	chr7	139210605	139211605	+	559.0	f1_c57bl6.idr	intron (NM_001162540, intron 1 of 11)	intron (NM_001162540, intron 1 of 11)	-1883.0	NM_027164	76612.0	Mm.17757	NM_027164	ENSMUSG00000015980	Lrrc27	1700071K18Rik|2310044E02Rik	leucine rich repeat containing 27	protein-coding	2.0	6.5	9.0	1.5	1.5	0.0
Merged-chr9-35163846-2	chr9	35163346	35164346	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027030, intron 2 of 5)	intron (NM_027030, intron 2 of 5)	12141.0	NM_027030	69305.0	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	0.0	7.5	11.5	0.0	7.5	11.5
Merged-chr3-89245684-2	chr3	89245184	89246184	+	559.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025327)	promoter-TSS (NM_025327)	213.0	NM_183037	360213.0	Mm.331156	NM_183037	ENSMUSG00000042766	Trim46	TRIFIC	tripartite motif-containing 46	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115634456-1	chr5	115633956	115634956	+	559.0	f1_balb.idr	intron (NM_198163, intron 1 of 5)	intron (NM_198163, intron 1 of 5)	2469.0	NM_198163	77407.0	Mm.27553	NM_198163	ENSMUSG00000029518	Rab35	9530019H02Rik|AU040256|H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117878407-1	chr5	117877907	117878907	+	559.0	f1_c57bl6.idr	intron (NM_008712, intron 1 of 27)	intron (NM_008712, intron 1 of 27)	11568.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6393024-1	chr11	6392524	6393524	+	559.0	f0_balb.idr	Intergenic	L1MD1|LINE|L1	-2101.0	NM_001005867	52915.0	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	1.5	1.0	1.0	5.5	0.0	2.5
Merged-chr11-98457279-2	chr11	98456779	98457779	+	559.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10445.0	NM_010346	14786.0	Mm.276702	NM_010346	ENSMUSG00000019312	Grb7	mKIAA4028	growth factor receptor bound protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84491721-2	chr3	84491221	84492221	+	559.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-11282.0	NM_001033301	229474.0	Mm.331107	NM_001033301	ENSMUSG00000041842	Fhdc1	6330505N24Rik|Gm126	FH2 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32090585-2	chr2	32090085	32091085	+	559.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4943.0	NM_145521	227721.0	Mm.257236	NM_145521	ENSMUSG00000051373	Plpp7	D830019K17Rik|NET39|Ppapdc3	phospholipid phosphatase 7 (inactive)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116650573-2	chr4	116650073	116651073	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021473, intron 1 of 8)	B3|SINE|B2	1101.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-37032940-1	chr8	37032440	37033440	+	559.0	f1_balb.idr	Intergenic	Intergenic	-8702.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	5.5	3.0	2.0	3.5	0.0	1.0
Merged-chr6-43204879-1	chr6	43204379	43205379	+	559.0	f1_balb.idr	Intergenic	L1_Mus2|LINE|L1	3233.0	NM_146653	258647.0	Mm.377612	NM_146653	ENSMUSG00000048693	Olfr435	MOR261-5	olfactory receptor 435	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31350810-2	chr15	31350310	31351310	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027496, intron 1 of 3)	intron (NM_027496, intron 1 of 3)	16949.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134110012-1	chr6	134109512	134110512	+	559.0	f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	74312.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	5.0	2.5	2.0	0.0	3.0	0.5
Merged-chr1-96872052-1	chr1	96871552	96872552	+	559.0	f0_balb.idr	exon (NM_172658, exon 1 of 13)	exon (NM_172658, exon 1 of 13)	119.0	NM_172658	227394.0	Mm.11662	NM_172658	ENSMUSG00000040693	Slco4c1	9530051F04|C330017E21Rik|OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20|oatp-R	solute carrier organic anion transporter family, member 4C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-64063012-1	chr11	64062512	64063512	+	559.0	f0_c57.idr	intron (NM_178379, intron 3 of 6)	intron (NM_178379, intron 3 of 6)	16460.0	NM_178379	70383.0	Mm.340211	NM_178379	ENSMUSG00000042148	Cox10	2410004F01Rik|AU042636	cytochrome c oxidase assembly protein 10	protein-coding	1.0	1.0	0.0	0.0	0.0	0.0
Merged-chr16-70868456-1	chr16	70867956	70868956	+	559.0	f0_balb.idr	Intergenic	Intergenic	252031.0	NR_040474	52645.0	Mm.188475	NR_040474		D16Ertd519e	-	DNA segment, Chr 16, ERATO Doi 519, expressed	ncRNA	8.0	10.5	1.5	0.0	7.0	1.0
Merged-chr10-121459960-1	chr10	121459460	121460460	+	559.0	f1_balb.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	16290.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	60.0	108.0	79.5	61.0	169.5	111.0
Merged-chr16-67160233-2	chr16	67159733	67160733	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178721, intron 1 of 9)	intron (NM_178721, intron 1 of 9)	460675.0	NM_001347247	239857.0	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98040907-1	chr13	98040407	98041407	+	559.0	f1_balb.idr	intron (NM_012026, intron 7 of 35)	intron (NM_012026, intron 7 of 35)	165258.0	NM_012026	110596.0	Mm.252718	NM_012026	ENSMUSG00000021662	Arhgef28	9230110L08Rik|AI323540|D13Bwg1089e|RIP2|Rgnef|RhoGEF|Rhoip2|p190RhoGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding	8.5	2.5	0.0	0.0	0.5	0.5
Merged-chr11-115210209-2	chr11	115209709	115210709	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033393, intron 8 of 9)	intron (NM_001033393, intron 8 of 9)	22722.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	11.0	6.0	4.5	5.5	6.5	1.5
Merged-chr2-172369742-2	chr2	172369242	172370242	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291185, intron 1 of 8)	ID_B1|SINE|B4	828.0	NM_001291185	20878.0	Mm.249363	NM_011497	ENSMUSG00000027496	Aurka	AIRK1|ARK-1|AU019385|AW539821|Ark1|Aurora-A|Ayk1|IAK|IAK1|Stk6	aurora kinase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-92173733-1	chr17	92173233	92174233	+	559.0	f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-1025284.0	NM_001315503	11516.0	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding	0.0	0.0	2.0	2.5	2.0	1.0
Merged-chr9-107932547-1	chr9	107932047	107933047	+	559.0	f1_c57bl6.idr	TTS (NM_026338)	TTS (NM_026338)	-3373.0	NM_145621	235604.0	Mm.274540	NM_145621	ENSMUSG00000032936	Camkv	1G5|BB074618|BC017634	CaM kinase-like vesicle-associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr7-122979313-1	chr7	122978813	122979813	+	559.0	f0_balb.idr	3' UTR (NM_175023, exon 3 of 3)	3' UTR (NM_175023, exon 3 of 3)	8749.0	NM_175023	19647.0	Mm.4480	NM_011247	ENSMUSG00000030779	Rbbp6	4933422O15Rik|AI316869|BB233631|C030034J04Rik|C77662|P2P-R|PACT	retinoblastoma binding protein 6, ubiquitin ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-31400515-3	chr9	31400005	31401005	+	559.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359654, intron 10 of 25)	intron (NM_001359654, intron 10 of 25)	14313.0	NM_001359654	235134.0	Mm.238146	NM_172766	ENSMUSG00000042185	Nfrkb	A530090G11Rik	nuclear factor related to kappa B binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-148727081-1	chr3	148726581	148727581	+	559.0	f0_balb.idr	Intergenic	Intergenic	227554.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	6.5	13.0	6.5	1.0	5.0	11.5
Merged-chr6-136553406-1	chr6	136552906	136553906	+	559.0	f1_c57bl6.idr	intron (NM_019426, intron 1 of 14)	B3|SINE|B2	34555.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	49.5	48.0	24.5	20.5	63.5	42.5
Merged-chr5-30625114-1	chr5	30624614	30625614	+	559.0	f0_balb.idr	3' UTR (NM_010608, exon 2 of 2)	3' UTR (NM_010608, exon 2 of 2)	-22822.0	NR_049199	100885838.0		NR_049199	ENSMUSG00000093710	Mir5625	Gm23930|mmu-mir-5625	microRNA 5625	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150606574-2	chr4	150606074	150607074	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	45600.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22049511-2	chr9	22049011	22050011	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010487, intron 1 of 6)	intron (NM_010487, intron 1 of 6)	2512.0	NM_010487	15571.0	Mm.390167	NM_010487	ENSMUSG00000003410	Elavl3	2600009P04Rik|Huc|PLE21|mHuC	ELAV like RNA binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-39674244-2	chr9	39673744	39674744	+	559.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25A|LTR|ERVK	5185.0	NM_001011827	258087.0	Mm.377346	NM_001011827	ENSMUSG00000064110	Olfr963	MOR224-13|MOR224-7P	olfactory receptor 963	protein-coding	0.0	0.0	2.0	0.0	4.5	0.0
Merged-chr1-119534604-1	chr1	119534104	119535104	+	559.0	f0_balb.idr	intron (NR_126486, intron 3 of 3)	MTD|LTR|ERVL-MaLR	1561.0	NR_126486	320069.0	Mm.406320	NR_126486	ENSMUSG00000101731	3830432H09Rik	-	RIKEN cDNA 3830432H09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34403338-1	chr17	34402838	34403838	+	559.0	f1_balb.idr	intron (NM_001163855, intron 1 of 23)	RodERV21-int|LTR|ERV1	4518.0	NM_001163855	407788.0	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	17.5	14.0	4.0	15.0	13.5	8.0
Merged-chr8-120312602-1	chr8	120312102	120313102	+	559.0	f0_balb.idr	Intergenic	Intergenic	-84372.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117621291-2	chr2	117620791	117621791	+	559.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	191511.0	NR_126427	100504728.0	Mm.413174	NR_126427		Gm13985	-	predicted gene 13985	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35646778-2	chr7	35646278	35647278	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019746, intron 1 of 5)	intron (NM_019746, intron 1 of 5)	704.0	NM_019746	56330.0	Mm.371609	NM_019746	ENSMUSG00000030417	Pdcd5	2200003D22Rik|AA408513|Tfar19	programmed cell death 5	protein-coding	0.0	0.0	3.0	0.0	0.0	2.0
Merged-chr8-117109977-2	chr8	117109477	117110477	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021486, intron 4 of 10)	intron (NM_021486, intron 4 of 10)	14112.0	NM_001163028	63857.0	Mm.174133	NM_021486	ENSMUSG00000031845	Bco1	Bcdo|Bcdo1|Bcmo1|CMO1|Cmoi|beta-CD|betaCMOOX	beta-carotene oxygenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73279129-1	chr2	73278629	73279629	+	559.0	f0_balb.idr	Intergenic	Intergenic	7203.0	NM_001005343	381373.0	Mm.330293	NM_001005343	ENSMUSG00000068859	Sp9	-	trans-acting transcription factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-144253082-2	chr5	144252582	144253582	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163709, intron 1 of 2)	RMER12C|LTR|ERVK	-2143.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr17-35924503-1	chr17	35924003	35925003	+	559.0	f1_c57bl6.idr	intron (NM_001357740, intron 4 of 18)	intron (NM_001357740, intron 4 of 18)	5231.0	NM_001357740	52040.0	Mm.29385	NM_175934	ENSMUSG00000039220	Ppp1r10	2610025H06Rik|Cat53|D17Ertd808e|Fb19|Pnuts	protein phosphatase 1, regulatory subunit 10	protein-coding	4.5	0.0	1.5	0.0	0.0	1.0
Merged-chr14-70765406-1	chr14	70764906	70765906	+	559.0	f1_c57bl6.idr	intron (NM_023045, intron 1 of 27)	intron (NM_023045, intron 1 of 27)	1222.0	NM_023045	65246.0	Mm.152987	NM_023045	ENSMUSG00000022100	Xpo7	4930506C02Rik|BB164534|Ranbp16|exp7	exportin 7	protein-coding	0.0	0.0	5.5	0.5	0.0	0.0
Merged-chr9-97112305-2	chr9	97111805	97112805	+	559.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1264.0	NM_138756	192287.0	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-3335402-2	chr18	3334902	3335902	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110851, intron 1 of 4)	intron (NM_001110851, intron 1 of 4)	-1014.0	NR_033457	633947.0	Mm.461446	NR_033457	ENSMUSG00000097746	Gm6225	EG621440	predicted gene 6225	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85332311-1	chr12	85331811	85332811	+	559.0	f1_c57bl6.idr	intron (NM_145138, intron 5 of 21)	B3A|SINE|B2	7051.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49053477-2	chr13	49052977	49053977	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290313, intron 23 of 29)	intron (NM_001290313, intron 23 of 29)	85365.0	NR_015601	68128.0	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139194489-2	chr4	139193989	139194989	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	378.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	45.0	179.5	107.0	27.0	102.0	58.0
Merged-chr16-94900372-2	chr16	94899872	94900872	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025584, intron 2 of 4)	Lx8b|LINE|L1	-43682.0	NM_001025590	16522.0	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121431196-2	chr10	121430696	121431696	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	45054.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50285083-1	chr17	50284583	50285583	+	559.0	f0_balb.idr	intron (NM_010021, intron 7 of 10)	intron (NM_010021, intron 7 of 10)	8537.0	NM_010021	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	1.0	0.0	9.5	1.0	0.0	2.0
Merged-chr2-13526416-1	chr2	13525916	13526916	+	559.0	f0_balb.idr	intron (NM_010067, intron 2 of 10)	intron (NM_010067, intron 2 of 10)	18248.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38657841-1	chr16	38657341	38658341	+	559.0	f1_c57bl6.idr	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	55194.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78592926-2	chr15	78592426	78593426	+	559.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-4121.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	2.5	6.0	2.0	4.5	0.0	4.0
Merged-chr1-57983610-1	chr1	57983110	57984110	+	559.0	f0_balb.idr	Intergenic	Lx6|LINE|L1	-1730.0	NM_001177867	68549.0	Mm.32800	NM_199007	ENSMUSG00000026039	Sgo2a	1110007N04Rik|4932411A20Rik|5730576N04Rik|AU018846|AV008062|D1Ertd8e|Sgol2|Sgol2a|Tripin	shugoshin 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-93093933-1	chr7	93093433	93094433	+	559.0	f0_balb.idr	Intergenic	Intergenic	14054.0	NM_021427	58238.0	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-25072598-1	chr3	25072098	25073098	+	559.0	f1_c57bl6.idr	Intergenic	Intergenic	-288592.0	NM_001326288	635702.0	Mm.448351	NM_001326288	ENSMUSG00000102758	Naaladl2	2810043G22Rik|EG635702|Gm1021	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding	0.0	5.5	0.0	0.0	0.0	0.5
Merged-chr15-35464701-1	chr15	35464201	35465201	+	559.0	f0_balb.idr	intron (NM_177151, intron 16 of 61)	ORR1D2|LTR|ERVL-MaLR	93155.0	NM_177151	666173.0	Mm.309250	NM_177151	ENSMUSG00000037646	Vps13b	1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|mKIAA0532|mKIAA5032	vacuolar protein sorting 13B	protein-coding	2.0	2.0	3.0	2.0	0.0	0.5
Merged-chr5-99928192-2	chr5	99927692	99928692	+	559.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	50746.0	NM_001077266	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150922871-2	chr2	150922371	150923371	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027014, intron 4 of 6)	B1_Mur4|SINE|Alu	13277.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-63885337-1	chr7	63884837	63885837	+	559.0	f1_c57bl6.idr	Intergenic	Intergenic	-31520.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0.0	8.0	2.5	0.0	3.0	4.5
Merged-chr9-22072583-1	chr9	22072083	22073083	+	559.0	f1_c57bl6.idr	intron (NM_012029, intron 8 of 8)	intron (NM_012029, intron 8 of 8)	-1207.0	NM_001310759	319601.0	Mm.347707	NM_177318	ENSMUSG00000038895	Zfp653	E430039K05Rik|Znf653	zinc finger protein 653	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32213310-2	chr19	32212810	32213810	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	-2297.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116168520-2	chr4	116168020	116169020	+	559.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133681)	promoter-TSS (NM_133681)	-922.0	NM_133681	66805.0	Mm.45994	NM_133681	ENSMUSG00000028699	Tspan1	9030418M05Rik	tetraspanin 1	protein-coding	1.0	0.0	1.0	1.0	0.0	2.0
Merged-chr16-50686834-2	chr16	50686334	50687334	+	559.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40298.0	NR_105782	102466634.0		NR_105782	ENSMUSG00000098482	Mir6363	Gm28026|mmu-mir-6363	microRNA 6363	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-76285963-1	chr17	76285463	76286463	+	559.0	f1_balb.idr	Intergenic	Intergenic	424940.0	NR_033456	100043885.0	Mm.127562	NR_033456		Gm4710	-	predicted gene 4710	ncRNA	2.0	0.0	0.0	0.0	0.5	1.5
Merged-chr6-29432918-2	chr6	29432418	29433418	+	559.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311074)	promoter-TSS (NM_001311074)	-235.0	NM_001081185	68794.0	Mm.39046	NM_026839	ENSMUSG00000068699	Flnc	1110055E19Rik|ABP-280|ABPL|Fln2	filamin C, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-76199203-1	chr13	76198703	76199703	+	559.0	f0_balb.idr	Intergenic	RMER20B|LTR|ERVK	100469.0	NM_001081352	218343.0	Mm.277964	NM_001081352	ENSMUSG00000033991	Ttc37	-	tetratricopeptide repeat domain 37	protein-coding	2.5	0.0	3.0	2.5	0.0	0.0
Merged-chr11-116136006-2	chr11	116135506	116136506	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024177, intron 2 of 8)	RMER13A1|LTR|ERVK	2862.0	NM_024177	60441.0	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	9.0	6.0	0.0	2.5	2.0	0.5
Merged-chr18-63684789-2	chr18	63684289	63685289	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016792, intron 1 of 7)	intron (NM_016792, intron 1 of 7)	7570.0	NM_016792	53382.0	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67628360-1	chr10	67627860	67628860	+	559.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-56401.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-121212862-1	chr4	121212362	121213362	+	559.0	f1_c57bl6.idr	intron (NM_001346660, intron 1 of 7)	intron (NM_001346660, intron 1 of 7)	2222.0	NM_001346660	109263.0	Mm.215745	NM_001081013	ENSMUSG00000049878	Rlf	9230110M18Rik|AI195322|MommeD8	rearranged L-myc fusion sequence	protein-coding	0.0	0.0	0.0	1.5	0.5	4.5
Merged-chr4-130783779-2	chr4	130783279	130784279	+	559.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8758.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24673145-1	chr17	24672645	24673645	+	559.0	f1_balb.idr	intron (NM_001348231, intron 1 of 11)	intron (NM_001348231, intron 1 of 11)	3458.0	NM_183149	213753.0	Mm.219581	NM_183149	ENSMUSG00000041130	Zfp598	BC023040|Ntrap|Znf598	zinc finger protein 598	protein-coding	11.5	4.0	7.0	0.0	2.0	9.0
Merged-chr19-4334836-2	chr19	4334336	4335336	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001984, intron 12 of 20)	intron (NM_001001984, intron 12 of 20)	-28614.0	NM_001290818	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	12.0	22.5	8.5	11.5	23.0	9.5
Merged-chr11-75999998-2	chr11	75999498	76000498	+	559.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198637)	promoter-TSS (NM_198637)	86.0	NM_198637	74230.0	Mm.271247	NM_198637	ENSMUSG00000053783	1700016K19Rik	Liat1	RIKEN cDNA 1700016K19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88714099-1	chr3	88713599	88714599	+	559.0	f1_balb.idr	Intergenic	Intergenic	-2755.0	NM_001163310	19769.0	Mm.4009	NM_009069	ENSMUSG00000028057	Rit1	RIBB|ROC1|Rit	Ras-like without CAAX 1	protein-coding	1.0	0.0	1.0	1.0	0.0	1.0
Merged-chr5-31866769-1	chr5	31866269	31867269	+	559.0	f1_c57bl6.idr	intron (NM_144541, intron 6 of 11)	intron (NM_144541, intron 6 of 11)	168719.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102012611-2	chr7	102012111	102013111	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133947, intron 20 of 24)	intron (NM_133947, intron 20 of 24)	5544.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-55956525-1	chr7	55956025	55957025	+	559.0	f1_balb.idr	intron (NM_023647, intron 1 of 6)	Lx7|LINE|L1	5968.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	17.5	52.0	32.5	28.0	74.0	52.0
Merged-chr11-70467272-2	chr11	70466772	70467772	+	559.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7288.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89295020-2	chr15	89294520	89295520	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081030, intron 30 of 39)	intron (NM_001081030, intron 30 of 39)	10712.0	NR_105924	102465981.0		NR_105924	ENSMUSG00000098442	Mir6959	Gm27807|mmu-mir-6959	microRNA 6959	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106693689-1	chr9	106693189	106694189	+	559.0	f1_balb.idr	exon (NM_030730, exon 22 of 22)	exon (NM_030730, exon 22 of 22)	-7737.0	NM_001286498	21767.0	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59497990-1	chr4	59497490	59498490	+	559.0	f0_balb.idr	intron (NM_144904, intron 6 of 14)	ORR1D1-int|LTR|ERVL-MaLR	51374.0	NM_178164	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150218752-1	chr4	150218252	150219252	+	559.0	f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-17617.0	NM_009802	12353.0	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	2.0	0.0	0.5	0.5	0.0	0.0
Merged-chr17-87206623-3	chr17	87206163	87207163	+	558.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11721.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	14.0	2.0	2.5	0.0	0.0	4.0
Merged-chr1-34844127-2	chr1	34843627	34844627	+	558.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1077.0	NM_001160236	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-114387297-2	chr13	114386797	114387797	+	558.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010887, intron 1 of 4)	intron (NM_010887, intron 1 of 4)	797.0	NM_010887	17993.0	Mm.253142	NM_010887	ENSMUSG00000021764	Ndufs4	6720411N02Rik|C1-18k	NADH dehydrogenase (ubiquinone) Fe-S protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20892312-3	chr18	20891765	20892765	+	558.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177038, intron 1 of 28)	MTE2b|LTR|ERVL-MaLR	3813.0	NM_029491	75964.0	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135980806-2	chr5	135980306	135981306	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011776, intron 1 of 7)	MT2B|LTR|ERVL	701.0	NM_011776	22788.0	Mm.1381	NM_011776	ENSMUSG00000004948	Zp3	Zp-3	zona pellucida glycoprotein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-84723439-2	chr10	84722939	84723939	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027423, intron 27 of 27)	intron (NM_027423, intron 27 of 27)	-32609.0	NM_001024918	71137.0	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-8483137-1	chr8	8482637	8483637	+	558.5	f0_balb.idr	Intergenic	Intergenic	177636.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-93820403-2	chr16	93819903	93820903	+	558.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11718.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	8.5	14.0	20.5	13.5	17.0	18.0
Merged-chr9-66976044-2	chr9	66975544	66976544	+	558.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030717)	promoter-TSS (NM_030717)	-560.0	NM_030717	80907.0	Mm.157882	NM_030717	ENSMUSG00000032370	Lactb	LACT-1|Lact1|Mrpl56	lactamase, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82763436-2	chr11	82762936	82763936	+	558.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025884)	promoter-TSS (NM_025884)	885.0	NM_009839	12467.0	Mm.4126	NM_009839	ENSMUSG00000020698	Cct6b	CCT-zeta-2|CCTzeta-2|Cctz-2|TCP-1-zeta-2	chaperonin containing Tcp1, subunit 6b (zeta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55109459-2	chr14	55108959	55109959	+	558.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_177049, exon 5 of 6)	exon (NM_177049, exon 5 of 6)	-2866.0	NM_007455	11766.0	Mm.238879	NM_007455	ENSMUSG00000040701	Ap1g2	Adtg2|G2ad	adaptor protein complex AP-1, gamma 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101719419-2	chr4	101718919	101719919	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146146, intron 1 of 18)	intron (NM_146146, intron 1 of 18)	2012.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-17575276-1	chr10	17574776	17575776	+	558.5	f1_c57bl6.idr	Intergenic	Intergenic	-147952.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.0	18.5	10.0	10.5	10.0	5.0
Merged-chr7-110612282-2	chr7	110611782	110612782	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 1 of 40)	B2_Mm2|SINE|B2	2638.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13987243-2	chr8	13986743	13987743	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_131137, intron 1 of 2)	ID4|SINE|ID	1153.0	NR_131137	546036.0	Mm.31785	NR_131136	ENSMUSG00000110058	Gm5907	EG546036|Gm45519|Gm845	predicted gene 5907	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6227288-2	chr19	6226788	6227788	+	558.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_198168)	TTS (NM_198168)	887.0	NM_130453	170458.0	Mm.379306	NM_130453	ENSMUSG00000024784	Gpha2	GPA2|zsig51	glycoprotein hormone alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106716633-2	chr1	106716133	106717133	+	558.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2343.0	NM_177410	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	0.0	0.0	1.5	0.0	1.0	0.0
Merged-chr1-138622745-2	chr1	138622245	138623245	+	558.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2988.0	NM_001311148	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8981855-2	chr19	8981355	8982355	+	558.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7429.0	NR_104460	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0.0	7.5	4.0	0.0	1.5	1.5
Merged-chr2-29770025-2	chr2	29769525	29770525	+	558.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8497.0	NM_001177392	433416.0	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	-	predicted gene 13547	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9166865-2	chr13	9166365	9167365	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 15 of 17)	intron (NM_172585, intron 15 of 17)	72984.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46599044-2	chr8	46598544	46599544	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001184, intron 6 of 14)	intron (NM_001001184, intron 6 of 14)	18183.0	NM_001001184	408022.0	Mm.217385	NM_001001184	ENSMUSG00000038225	Primpol	BC065112|Ccdc111	primase and polymerase (DNA-directed)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-89688516-2	chr4	89687984	89688984	+	558.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_175647, exon 1 of 2)	exon (NM_175647, exon 1 of 2)	286.0	NM_175647	242523.0	Mm.130167	NM_175647	ENSMUSG00000043753	Dmrta1	Dmrt4	doublesex and mab-3 related transcription factor like family A1	protein-coding	0.0	0.0	0.5	0.0	6.0	0.0
Merged-chr8-122331351-2	chr8	122330851	122331851	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009569, intron 4 of 9)	intron (NM_009569, intron 4 of 9)	31477.0	NM_133202	170732.0	Mm.154808	NM_133202	ENSMUSG00000039079	Trhr2	TRH-R2	thyrotropin releasing hormone receptor 2	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr6-83079095-2	chr6	83078595	83079595	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_197992, intron 2 of 8)	intron (NM_197992, intron 2 of 8)	705.0	NM_197992	69837.0	Mm.12261	NM_197992	ENSMUSG00000069678	Pcgf1	2010002K04Rik|AU024121|Nspc1	polycomb group ring finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-126862829-2	chr2	126862329	126863329	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164325, intron 1 of 38)	intron (NM_001164325, intron 1 of 38)	13432.0	NM_001164325	58800.0	Mm.244705	NM_021450	ENSMUSG00000027365	Trpm7	2310022G15Rik|4833414K03Rik|5033407O22Rik|CHAK|CHAK1|LTrpC-7|Ltpr7|Ltrpc7|TRPPLIK	transient receptor potential cation channel, subfamily M, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-73755558-2	chr18	73755058	73756058	+	558.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1079.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	1.5	0.5	2.5	0.0	0.0	0.0
Merged-chr6-45774533-2	chr6	45774033	45775033	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004357, intron 3 of 23)	Lx2|LINE|L1	714472.0	NM_001004357	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115084189-2	chr11	115083689	115084689	+	558.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7242.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98508203-2	chr15	98507703	98508703	+	558.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	10729.0	NM_001001807	258502.0	Mm.377539	NM_001001807	ENSMUSG00000054036	Olfr279	MOR122-1|Olfr234|Olfr234-ps1|Olfr279-ps1	olfactory receptor 279	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152560313-2	chr1	152559813	152560813	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 4 of 17)	intron (NM_016846, intron 4 of 17)	64904.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-49757216-2	chr3	49756716	49757716	+	558.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130448)	promoter-TSS (NM_130448)	100.0	NM_130448	73173.0	Mm.87246	NM_130448	ENSMUSG00000037892	Pcdh18	3110038E07Rik|BB095589|PCDH68L	protocadherin 18	protein-coding	5.0	2.5	0.0	5.0	2.5	0.0
Merged-chr4-120031567-2	chr4	120031067	120032067	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-129639.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-6192153-2	chr13	6191653	6192653	+	558.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	330664.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-8084133-2	chr14	8083633	8084633	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025938, intron 3 of 5)	intron (NM_025938, intron 3 of 5)	3820.0	NM_025938	67053.0	Mm.210048	NM_025938	ENSMUSG00000023156	Rpp14	2610511E03Rik|AA682089	ribonuclease P 14 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114802127-2	chr11	114801627	114802627	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181749, intron 1 of 2)	ORR1C2|LTR|ERVL-MaLR	3203.0	NM_181749	217302.0	Mm.269127	NM_181749	ENSMUSG00000034677	Gpr142	PGR2	G protein-coupled receptor 142	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-105843276-2	chr10	105842776	105843776	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025602, intron 2 of 3)	intron (NM_025602, intron 2 of 3)	1797.0	NM_025602	52713.0	Mm.339224	NM_025602	ENSMUSG00000019897	Ccdc59	2300004H16Rik|D10Ertd718e	coiled-coil domain containing 59	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25612271-2	chr2	25611771	25612771	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029859, intron 6 of 13)	intron (NM_029859, intron 6 of 13)	-3825.0	NM_001024616	227624.0	Mm.29600	NM_001024616	ENSMUSG00000015087	Rabl6	B230208H17Rik|Rbel1|Rbel1a|Rbel1b|parf	RAB, member RAS oncogene family-like 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-150047348-2	chr3	150046848	150047848	+	558.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	772611.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr5-34523330-2	chr5	34522830	34523830	+	558.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-2454.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100416095-2	chr11	100415595	100416595	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163481, intron 1 of 9)	intron (NM_001163481, intron 1 of 9)	401.0	NM_001163481	14230.0	Mm.3894	NM_010221	ENSMUSG00000001555	Fkbp10	AI325255|FKBP-10|FKBP-65|FKBP65|Fkbp-rs1|Fkbp1-rs|Fkbp6|Fkbprp	FK506 binding protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152333323-2	chr2	152332823	152333823	+	558.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083921)	promoter-TSS (NM_001083921)	-684.0	NM_019705	24105.0	Mm.182145	NM_019705	ENSMUSG00000027466	Rbck1	AL033326|HOIL-1|HOIL-1L|UIP28|Ubce7ip3	RanBP-type and C3HC4-type zinc finger containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-37198069-2	chr6	37197569	37198569	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	101907.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75194645-2	chr11	75194145	75195145	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177708, intron 1 of 1)	CpG	652.0	NM_177708	237847.0	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	4.5	4.0	0.0	4.5	2.0	0.0
Merged-chr1-150266697-2	chr1	150266197	150267197	+	558.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52720.0	NM_024458	20028.0	Mm.440883	NM_024458	ENSMUSG00000006007	Pdc	Rpr-1|Rpr1	phosducin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96255654-2	chr3	96255154	96256154	+	558.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7663.0	NM_033596	97122.0	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112682059-2	chr12	112681559	112682559	+	558.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001100460, exon 2 of 2)	3' UTR (NM_001100460, exon 2 of 2)	3219.0	NM_001100460	382639.0	Mm.11350	NM_001100460	ENSMUSG00000037638	Zbtb42	EG382639|Gm5188|simiRP58	zinc finger and BTB domain containing 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30735438-2	chr2	30734938	30735938	+	558.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12BD_Mm|LTR|ERVK	14228.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-49235445-2	chr12	49234945	49235945	+	558.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-147438.0	NM_001160112	15228.0	Mm.4704	NM_008241	ENSMUSG00000020950	Foxg1	2900064B05Rik|BF-1|Bf1|Hfh9|Hfhbf1	forkhead box G1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-114815106-2	chr9	114814606	114815606	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027294, intron 1 of 3)	B4A|SINE|B4	29046.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr18-90151530-2	chr18	90151030	90152030	+	558.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-358624.0	NM_198295	67988.0	Mm.268041	NM_198295	ENSMUSG00000024614	Tmx3	6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830	thioredoxin-related transmembrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94519036-2	chr11	94518536	94519536	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_170671, intron 1 of 18)	intron (NM_170671, intron 1 of 18)	2466.0	NM_170671	104601.0	Mm.84725	NM_170671	ENSMUSG00000039110	Mycbpap	4932408B01Rik|AMAP-1|AW125474	MYCBP associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25827764-2	chr17	25827264	25828264	+	558.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_173741, exon 7 of 9)	exon (NM_173741, exon 7 of 9)	-1279.0	NM_028101	72106.0	Mm.277599	NM_028101	ENSMUSG00000025736	Jmjd8	2610003J06Rik	jumonji domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122099425-2	chr14	122098925	122099925	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_015586, intron 3 of 3)	MER90|LTR|ERV1	7549.0	NR_015586	319727.0	Mm.215552	NR_015586		A330035P11Rik	-	RIKEN cDNA A330035P11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25571417-2	chr15	25570917	25571917	+	558.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-51133.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63711640-2	chr9	63711140	63712140	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	46354.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-12966938-2	chr7	12966438	12967438	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362140, intron 1 of 2)	intron (NM_001362140, intron 1 of 2)	1100.0	NM_001362139	243834.0	Mm.133086	NM_178732	ENSMUSG00000004500	Zfp324	A930002M05|D430030K24Rik|ZF5128	zinc finger protein 324	protein-coding	0.5	0.5	2.0	1.0	2.5	7.0
Merged-chr2-128814587-2	chr2	128814087	128815087	+	558.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3716.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0.0	1.0	1.5	0.0	1.0	0.5
Merged-chr15-73487360-2	chr15	73486860	73487860	+	558.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25200.0	NR_152151	105841.0	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35111760-2	chr9	35111260	35112260	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-4968.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122953555-2	chr8	122953055	122954055	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	88729.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	9.0	10.5	3.0	0.0	1.0	4.5
Merged-chr2-26976094-2	chr2	26975594	26976594	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001322, intron 3 of 28)	intron (NM_001001322, intron 3 of 28)	2678.0	NM_001290465	279028.0	Mm.330084	NM_001001322	ENSMUSG00000014852	Adamts13	ADAM-TS13|ADAMTS-13|Gm710|vWF-CP	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-164793414-2	chr2	164792914	164793914	+	558.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133924)	TTS (NM_133924)	7393.0	NM_133924	101113.0	Mm.295647	NM_133924	ENSMUSG00000050373	Snx21	5730407K14Rik|AI481716	sorting nexin family member 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-151598731-2	chr2	151598231	151599231	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291077, intron 3 of 4)	intron (NM_001291077, intron 3 of 4)	26108.0	NM_145535	228765.0	Mm.32068	NM_145535	ENSMUSG00000027456	Sdcbp2	-	syndecan binding protein (syntenin) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11060927-2	chr16	11060427	11061427	+	558.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5371.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-12291396-2	chr12	12290896	12291896	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	MLT1A0|LTR|ERVL-MaLR	29257.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29236656-2	chr7	29236156	29237156	+	558.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357668)	promoter-TSS (NM_001357668)	-938.0	NM_001357668	77254.0	Mm.36699	NM_029887	ENSMUSG00000030588	Yif1b	9430029K10Rik|Yip1b	Yip1 interacting factor homolog B (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93163510-3	chr10	93162994	93163994	+	558.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_035452)	TTS (NR_035452)	709.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	3.0	14.5	7.5	4.5	3.5	13.5
Merged-chr6-26393121-3	chr6	26392619	26393619	+	558.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	461693.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77802282-1	chr11	77801782	77802782	+	558.333313	f0_balb.idr	intron (NM_001291214, intron 1 of 38)	intron (NM_001291214, intron 1 of 38)	984.0	NM_001291215	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113845602-2	chr5	113845107	113846107	+	558.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011779, intron 9 of 10)	intron (NM_011779, intron 9 of 10)	-15106.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	2.0	0.0	0.0	0.0	1.0	0.0
Merged-chr1-39688820-2	chr1	39688320	39689320	+	558.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145660, intron 6 of 14)	intron (NM_001145660, intron 6 of 14)	32169.0	NM_001145660	619289.0	Mm.334107	NM_001145660	ENSMUSG00000057173	Rfx8	4933400N17Rik	regulatory factor X 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19060668-2	chr10	19060168	19061168	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45258.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-25881171-2	chr18	25880671	25881671	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127014.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145858625-1	chr2	145858125	145859125	+	558.0	f0_balb.idr	intron (NM_028724, intron 8 of 12)	intron (NM_028724, intron 8 of 12)	-44616.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	0.0	2.5	7.5	3.5	4.0	2.0
Merged-chr4-119292650-1	chr4	119292150	119293150	+	558.0	f0_balb.idr	intron (NM_011732, intron 2 of 7)	intron (NM_011732, intron 2 of 7)	1863.0	NM_011732	22608.0	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	41.0	45.5	78.5	50.0	116.0	110.0
Merged-chr3-95904130-2	chr3	95903630	95904630	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355750, intron 1 of 10)	intron (NM_001355750, intron 1 of 10)	555.0	NM_001355751	23831.0	Mm.489647	NM_011797	ENSMUSG00000038526	Car14	AW536446|CA-XIV|Ca14	carbonic anhydrase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-91522225-1	chr13	91521725	91522725	+	558.0	f1_balb.idr	intron (NM_001360776, intron 1 of 15)	MTC|LTR|ERVL-MaLR	61128.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	2.5	0.0	0.0	0.5	1.5	0.0
Merged-chr7-113186624-1	chr7	113186124	113187124	+	558.0	f0_balb.idr	Intergenic	Intergenic	-20841.0	NM_001243048	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19341466-2	chr7	19340966	19341966	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3605.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0.5	0.0	0.0	1.0	0.0	0.0
Merged-chr7-141171586-2	chr7	141171086	141172086	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172100, intron 1 of 9)	B1F|SINE|Alu	1265.0	NM_001172100	107702.0	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92697734-2	chr1	92697234	92698234	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48893.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-28071186-1	chr15	28070686	28071686	+	558.0	f1_balb.idr	Intergenic	Intergenic	-45338.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-51596410-2	chr10	51595910	51596910	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-5950.0	NM_029894	77296.0	Mm.30588	NM_029894	ENSMUSG00000019909	Fam162b	9430073N08Rik	family with sequence similarity 162, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66021238-1	chr5	66020738	66021738	+	558.0	f1_balb.idr	intron (NM_139065, intron 6 of 6)	intron (NM_139065, intron 6 of 6)	-16953.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29371501-2	chr17	29370985	29371985	+	558.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_001159538, intron 9 of 15)	intron (NM_001159538, intron 9 of 15)	10571.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	8.5	19.5	22.0	4.5	33.5	12.0
Merged-chr6-82765872-2	chr6	82765372	82766372	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 1 of 17)	RSINE1|SINE|B4	8582.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-74716197-1	chr9	74715697	74716697	+	558.0	f1_c57bl6.idr	Intergenic	Intergenic	-132240.0	NR_045284	100503019.0	Mm.482658	NR_045284	ENSMUSG00000066477	Gm16551	-	predicted gene 16551	ncRNA	0.0	0.0	0.0	1.0	0.0	2.0
Merged-chr2-181222166-2	chr2	181221666	181222666	+	558.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_199312, exon 2 of 3)	exon (NM_199312, exon 2 of 3)	2150.0	NM_199312	332713.0	Mm.23349	NM_199312	ENSMUSG00000047841	Fndc11	1700026M20Rik	fibronectin type III domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24807992-2	chr13	24807492	24808492	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024473, intron 3 of 4)	intron (NM_024473, intron 3 of 4)	6335.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70223629-2	chr11	70223129	70224129	+	558.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007528)	TTS (NM_007528)	-2635.0	NM_172371	69309.0	Mm.93266	NM_172371	ENSMUSG00000044367	Slc16a13	1700007D07Rik	solute carrier family 16 (monocarboxylic acid transporters), member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97704383-2	chr11	97703883	97704883	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011971, intron 2 of 5)	intron (NM_011971, intron 2 of 5)	949.0	NM_011971	26446.0	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101505878-2	chr7	101505378	101506378	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008548, intron 19 of 30)	intron (NM_001008548, intron 19 of 30)	30502.0	NR_029791	387157.0		NR_029791	ENSMUSG00000065446	Mir139	Mirn139|mir-139|mmu-mir-139	microRNA 139	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-135355665-1	chr6	135355165	135356165	+	558.0	f0_balb.idr	Intergenic	Intergenic	-7266.0	NM_010128	13730.0	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	12.5	0.5	2.0	1.0	2.0	5.0
Merged-chr3-108553385-2	chr3	108552885	108553885	+	558.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_028538)	TTS (NR_028538)	1017.0	NR_028538	100217438.0		NR_028538		Scarna2	MBII-382	small Cajal body-specific RNA 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97932925-1	chr3	97932425	97933425	+	558.0	f0_balb.idr	intron (NM_001033779, intron 1 of 1)	intron (NM_001033779, intron 1 of 1)	2752.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90045209-2	chr16	90044709	90045709	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70510.0	NM_001145886	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105857952-2	chr8	105857452	105858452	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-2581.0	NM_026532	68051.0	Mm.455474	NM_026532	ENSMUSG00000008450	Nutf2	2700067I02Rik|AI115459|AI413596|AW546000|Ntf2|Ntf3|PP15	nuclear transport factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-67062413-2	chr13	67061913	67062913	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1243.0	NM_001166218	78251.0	Mm.297247	NM_001166218	ENSMUSG00000090641	Zfp712	4921504N20Rik|mszf31|mszf89	zinc finger protein 712	protein-coding	0.0	7.5	0.0	0.0	0.0	0.0
Merged-chr10-37343075-3	chr10	37342555	37343555	+	558.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-204129.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34303586-1	chr17	34303086	34304086	+	558.0	f1_balb.idr	Intergenic	B4A|SINE|B4	-2281.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	34.0	99.0	18.0	22.5	51.5	20.5
Merged-chr5-113007206-1	chr5	113006706	113007706	+	558.0	f0_balb.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	8332.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	2.5	0.5	2.0	2.5	0.5	2.0
Merged-chr4-55580934-1	chr4	55580434	55581434	+	558.0	f1_balb.idr	Intergenic	ORR1D1-int|LTR|ERVL-MaLR	-48459.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	9.0	15.0	1.5	3.0	11.0	11.0
Merged-chr7-16055688-1	chr7	16055188	16056188	+	558.0	f1_c57bl6.idr	Intergenic	Intergenic	-16157.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	3.5	2.5	0.0	4.5	4.0	2.0
Merged-chr10-60255537-1	chr10	60255037	60256037	+	558.0	f1_balb.idr	Intergenic	Intergenic	-22091.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25717741-2	chr15	25717241	25718241	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 4 of 40)	intron (NM_019472, intron 4 of 40)	-35465.0	NM_001353142	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	1.0	1.0	0.0	0.0	0.5
Merged-chr9-79806850-1	chr9	79806350	79807350	+	558.0	f0_balb.idr	Intergenic	Intergenic	13209.0	NR_040734	74633.0	Mm.262175	NR_040734	ENSMUSG00000086918	4930429F24Rik	-	RIKEN cDNA 4930429F24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-117284241-1	chr13	117283741	117284741	+	558.0	f0_balb.idr	Intergenic	Intergenic	63668.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0.0	3.0	0.0	0.0	6.0	0.0
Merged-chr6-120090151-2	chr6	120089651	120090651	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-3229.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118507397-1	chr11	118506897	118507897	+	558.0	f1_c57bl6.idr	intron (NM_001024931, intron 5 of 14)	intron (NM_001024931, intron 5 of 14)	30565.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117415003-2	chr8	117414503	117415503	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 4 of 20)	intron (NM_028941, intron 4 of 20)	-38020.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35860737-2	chr17	35860212	35861212	+	558.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134122)	promoter-TSS (NM_134122)	-606.0	NM_134122	106582.0	Mm.390992	NM_134122	ENSMUSG00000059791	Nrm	2610307M02Rik|AI429796	nurim (nuclear envelope membrane protein)	protein-coding	8.0	6.5	1.5	5.5	5.5	2.5
Merged-chr1-149843594-1	chr1	149843094	149844094	+	558.0	f0_c57.idr	intron (NM_008869, intron 15 of 17)	MTD|LTR|ERVL-MaLR	78845.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124645912-1	chr2	124645412	124646412	+	558.0	f0_balb.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	-7669.0	NM_199240	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67154041-2	chr15	67153541	67154541	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 1 of 8)	intron (NM_009177, intron 1 of 8)	22841.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0.0	0.0	4.0	3.5	0.0	4.0
Merged-chr3-97665682-1	chr3	97665182	97666182	+	558.0	f0_balb.idr	intron (NM_182997, intron 5 of 7)	L1MB7|LINE|L1	7470.0	NM_182997	108097.0	Mm.31175	NM_182997	ENSMUSG00000038205	Prkab2	5730553K21Rik|AW049591|BB124140	protein kinase, AMP-activated, beta 2 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8711016-2	chr11	8710516	8711516	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46481.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158159475-1	chr2	158158975	158159975	+	558.0	f1_c57bl6.idr	Intergenic	L2|LINE|L2	-13083.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124929060-2	chr2	124928560	124929560	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139067.0	NM_175034	317750.0	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47091518-1	chr14	47091018	47092018	+	558.0	f1_c57bl6.idr	intron (NM_001037221, intron 11 of 12)	intron (NM_001037221, intron 11 of 12)	22541.0	NM_001310544	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	0.0	0.0	2.5	1.0	0.0	5.0
Merged-chr4-10926470-1	chr4	10925970	10926970	+	558.0	f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	51972.0	NM_026005	67157.0	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	3.0	19.0	1.0	1.0	5.5	2.0
Merged-chr16-34937825-1	chr16	34937325	34938325	+	558.0	f1_c57bl6.idr	intron (NR_040536, intron 1 of 2)	intron (NR_040536, intron 1 of 2)	1504.0	NR_040536	76649.0	Mm.420532	NR_040536	ENSMUSG00000100593	1700119H24Rik	-	RIKEN cDNA 1700119H24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137481341-3	chr5	137480840	137481840	+	558.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4276.0	NM_011741	22635.0	Mm.7984	NM_011741	ENSMUSG00000079173	Zan	Zan-test	zonadhesin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80338573-2	chr10	80338073	80339073	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	8428.0	NM_139292	70335.0	Mm.28147	NM_139292	ENSMUSG00000035504	Reep6	0610011M24Rik|Dp1l1	receptor accessory protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75191367-1	chr11	75190867	75191867	+	558.0	f1_c57bl6.idr	promoter-TSS (NM_144491)	promoter-TSS (NM_144491)	-884.0	NM_144491	116905.0	Mm.41496	NM_144491	ENSMUSG00000078789	Dph1	2310011M22Rik|4930488F09Rik|AW551873|Dph2l1|Ovca1	diphthamide biosynthesis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26434538-1	chr8	26434038	26435038	+	558.0	f1_balb.idr	Intergenic	Intergenic	276369.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	0.5	3.0	0.0	0.0	0.0	0.0
Merged-chr2-79243969-2	chr2	79243469	79244469	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11457.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44305242-2	chr9	44304742	44305742	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172162, intron 1 of 9)	intron (NM_172162, intron 1 of 9)	429.0	NM_172162	102423.0	Mm.24570	NM_172162	ENSMUSG00000032119	Hinfp	AA589481|HiNF-P|Mizf	histone H4 transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37257065-1	chr9	37256565	37257565	+	558.0	f1_c57bl6.idr	Intergenic	Intergenic	-1327.0	NM_001145960	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	5.5	0.0	0.0	2.0	0.0	1.0
Merged-chr15-73734244-2	chr15	73733744	73734744	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	9314.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19219164-2	chr7	19218664	19219664	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175668, intron 1 of 1)	intron (NM_175668, intron 1 of 1)	6626.0	NM_175668	319197.0	Mm.135984	NM_175668	ENSMUSG00000044317	Gpr4	-	G protein-coupled receptor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-67229319-2	chr16	67228819	67229819	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178721, intron 1 of 9)	intron (NM_178721, intron 1 of 9)	391589.0	NM_001347247	239857.0	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-40479638-1	chr1	40479138	40480138	+	558.0	f0_balb.idr	intron (NM_001161842, intron 5 of 9)	intron (NM_001161842, intron 5 of 9)	13632.0	NM_008365	16182.0	Mm.253664	NM_008365	ENSMUSG00000026070	Il18r1	Il18ralpha|Il1rrp	interleukin 18 receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27536948-1	chr17	27536448	27537448	+	558.0	f1_balb.idr	Intergenic	Intergenic	-19626.0	NM_001166536	15361.0	Mm.4438	NM_016660	ENSMUSG00000046711	Hmga1	AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy	high mobility group AT-hook 1	protein-coding	1.5	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114596419-1	chr5	114595919	114596919	+	558.0	f0_balb.idr	intron (NM_001004180, intron 2 of 2)	intron (NM_001004180, intron 2 of 2)	28168.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-36865147-2	chr14	36864647	36865647	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54388.0	NM_001347503	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25161685-2	chr10	25161185	25162185	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38485.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34351187-1	chr6	34350687	34351687	+	558.0	f0_balb.idr	Intergenic	RMER10B|LTR|ERVL	-2959.0	NM_008012	14187.0	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165963200-2	chr2	165962700	165963700	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-29437.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.5	3.0	4.0	2.0	2.0	1.5
Merged-chr14-51065974-1	chr14	51065474	51066474	+	558.0	f1_balb.idr	Intergenic	Intergenic	5468.0	NM_207558	404319.0	Mm.377276	NM_207558	ENSMUSG00000035932	Olfr750	GA_x5J8B7W5WBF-6267395-6266441|GA_x6K02T2PMLR-6808276-6807281|MOR103-18	olfactory receptor 750	protein-coding	13.0	14.5	10.5	4.0	17.0	14.5
Merged-chr18-61128877-2	chr18	61128377	61129377	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 17 of 21)	intron (NM_001037859, intron 17 of 21)	11409.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.0	1.5	2.0	0.5	0.5	1.5
Merged-chr13-107794736-1	chr13	107794236	107795236	+	558.0	f0_balb.idr	intron (NM_145456, intron 2 of 14)	L1MA5|LINE|L1	95328.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-23753493-2	chr15	23752993	23753993	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	717030.0	NM_001081299	320865.0	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l|Tg(GFAP-APOE_i4)1Hol	cadherin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101936368-2	chr5	101935868	101936868	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 14 of 66)	intron (NM_172882, intron 14 of 66)	133553.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	1.0	0.0	0.0	0.0	0.0	1.5
Merged-chr7-80099010-2	chr7	80098510	80099510	+	558.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_173011, exon 4 of 11)	exon (NM_173011, exon 4 of 11)	16340.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139068296-2	chr7	139067796	139068796	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028708, intron 19 of 19)	intron (NM_028708, intron 19 of 19)	-17705.0	NM_011993	26757.0	Mm.250414	NM_011993	ENSMUSG00000025478	Dpysl4	AI173505|CRMP-3|Crmp3|DPY4|Drp-4|Ulip4	dihydropyrimidinase-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23498147-1	chr18	23497647	23498647	+	558.0	f1_balb.idr	intron (NM_001361215, intron 1 of 19)	intron (NM_001361215, intron 1 of 19)	665.0	NM_001285810	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	0.0	4.0	1.0	5.5	4.0	2.0
Merged-chr2-91272316-1	chr2	91271816	91272816	+	558.0	f1_c57bl6.idr	TTS (NM_001311144)	TTS (NM_001311144)	7201.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	2.5	36.5	7.0	1.0	19.5	17.5
Merged-chr5-99708889-2	chr5	99708389	99709389	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	20171.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr1-96334140-1	chr1	96333640	96334640	+	558.0	f1_balb.idr	Intergenic	L1Md_A|LINE|L1	-312382.0	NR_040467	73454.0	Mm.396229	NR_040467	ENSMUSG00000100062	1700063A18Rik	-	RIKEN cDNA 1700063A18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141958764-2	chr4	141958264	141959264	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 9 of 31)	intron (NM_177868, intron 9 of 31)	-24228.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120011349-2	chr11	120010849	120011849	+	558.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001198785, exon 11 of 14)	exon (NM_001198785, exon 11 of 14)	-3418.0	NR_037225	100526518.0		NR_037225	ENSMUSG00000105524	Mir3065	mir-3065|mmu-mir-3065	microRNA 3065	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70771767-2	chr8	70771267	70772267	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008841, intron 6 of 15)	intron (NM_008841, intron 6 of 15)	4945.0	NM_008841	18709.0	Mm.12945	NM_008841	ENSMUSG00000031834	Pik3r2	p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding	0.0	5.0	0.0	1.5	16.0	0.0
Merged-chr14-55114251-2	chr14	55113751	55114751	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177049, intron 2 of 5)	CpG	2684.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44398646-1	chr9	44398146	44399146	+	558.0	f1_balb.idr	intron (NM_001357730, intron 2 of 9)	intron (NM_001357730, intron 2 of 9)	470.0	NM_008063	14385.0	Mm.30087	NM_008063	ENSMUSG00000032114	Slc37a4	100043178|G6PT|G6pt1|GSD-1b|mG6PT	solute carrier family 37 (glucose-6-phosphate transporter), member 4	protein-coding	3.0	0.0	0.0	3.0	0.0	0.0
Merged-chr16-31940958-2	chr16	31940498	31941498	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172822, intron 1 of 2)	intron (NM_172822, intron 1 of 2)	7147.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96625320-1	chr10	96624820	96625820	+	558.0	f0_balb.idr	Intergenic	Intergenic	8319.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43558533-1	chr17	43558033	43559033	+	558.0	f1_balb.idr	Intergenic	Intergenic	-9918.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	2.5	13.0	8.5	1.0	18.0	4.0
Merged-chr8-120698612-2	chr8	120698112	120699112	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30292.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122807857-1	chr10	122807357	122808357	+	558.0	f1_c57bl6.idr	intron (NM_001110218, intron 3 of 9)	intron (NM_001110218, intron 3 of 9)	128542.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0.5	0.0	3.5	0.0	2.0	1.0
Merged-chr4-123512988-2	chr4	123512488	123513488	+	558.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001199136, exon 7 of 98)	exon (NM_001199136, exon 7 of 98)	-101077.0	NM_001167918	442834.0	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-27207207-1	chr8	27206707	27207707	+	558.0	f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-4660.0	NM_029674	76615.0	Mm.272794	NM_029674	ENSMUSG00000039720	Got1l1	1700083M11Rik	glutamic-oxaloacetic transaminase 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-106663923-1	chr6	106663423	106664423	+	558.0	f1_c57bl6.idr	intron (NM_001109749, intron 17 of 25)	intron (NM_001109749, intron 17 of 25)	85114.0	NM_008370	16192.0	Mm.3448	NM_008370	ENSMUSG00000005364	Il5ra	CD125|CDw125|Il5r	interleukin 5 receptor, alpha	protein-coding	15.5	1.0	3.5	9.5	16.0	5.5
Merged-chr10-70246099-2	chr10	70245599	70246599	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025807, intron 1 of 5)	intron (NM_025807, intron 1 of 5)	823.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13725932-2	chr8	13725432	13726432	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101519, intron 1 of 3)	intron (NM_001101519, intron 1 of 3)	20043.0	NM_001101519	403185.0	Mm.252143	NM_001101519	ENSMUSG00000090336	4932443I19Rik	A230061C02Rik|Gm1106	RIKEN cDNA 4932443I19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38708345-2	chr15	38707845	38708845	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20171.0	NR_131206	105463124.0	Mm.432448	NR_131206	ENSMUSG00000115620	Gm45924	Borg	predicted gene, 45924	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29486033-1	chr19	29485533	29486533	+	558.0	f1_balb.idr	Intergenic	Intergenic	35954.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83900877-2	chr8	83900371	83901371	+	558.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_181039, exon 1 of 23)	5' UTR (NM_181039, exon 1 of 23)	773.0	NM_181039	330814.0	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr8-85071238-1	chr8	85070738	85071738	+	558.0	f1_balb.idr	promoter-TSS (NM_001039514)	promoter-TSS (NM_001039514)	-519.0	NM_001039514	330817.0	Mm.193086	NM_201408	ENSMUSG00000060038	Dhps	Dhs	deoxyhypusine synthase	protein-coding	33.5	99.5	79.0	49.0	94.0	59.0
Merged-chr6-86683335-2	chr6	86682835	86683835	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025665, intron 1 of 5)	B1_Mus1|SINE|Alu	1156.0	NM_025665	66618.0	Mm.182650	NM_025665	ENSMUSG00000001158	Snrnp27	2610209M04Rik|AI449063|AU022368|Ry1	small nuclear ribonucleoprotein 27 (U4/U6.U5)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97693216-1	chr11	97692716	97693716	+	558.0	f1_balb.idr	intron (NM_001163308, intron 2 of 9)	intron (NM_001163308, intron 2 of 9)	6168.0	NM_001163307	22658.0	Mm.2418	NM_009545	ENSMUSG00000018537	Pcgf2	Mel18|Rnf110|Zfp144|mel-18	polycomb group ring finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112858399-1	chr12	112857899	112858899	+	558.0	f1_balb.idr	intron (NM_019925, intron 1 of 2)	intron (NM_019925, intron 1 of 2)	2517.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-75786863-2	chr12	75786363	75787363	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31455.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70835077-1	chr8	70834577	70835577	+	558.0	f1_c57bl6.idr	TTS (NM_027560)	TTS (NM_027560)	4643.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	2.0	12.5	6.0	8.0	21.0	11.0
Merged-chr7-44874111-1	chr7	44873611	44874611	+	558.0	f1_c57bl6.idr	Intergenic	Intergenic	-4323.0	NM_133949	84113.0	Mm.42855	NM_133949	ENSMUSG00000038502	Ptov1	1110030G05Rik|AU041779|Gcap3	prostate tumor over expressed gene 1	protein-coding	1.0	2.0	0.0	2.0	10.5	4.5
Merged-chr1-154094959-2	chr1	154094459	154095459	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-106228.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120576806-2	chr9	120576306	120577306	+	558.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073359)	promoter-TSS (NR_073359)	-525.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-54325656-2	chr15	54325156	54326156	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCTCTG)n|Simple_repeat|Simple_repeat	-47172.0	NM_008764	18383.0	Mm.15383	NM_008764	ENSMUSG00000063727	Tnfrsf11b	OCIF|Opg|TR1	tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-155779040-2	chr3	155778540	155779540	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-197314.0	NR_040553	329780.0	Mm.119000	NR_040553	ENSMUSG00000104553	9330178D15Rik	9330178D15	RIKEN cDNA 9330178D15 gene	ncRNA	1.5	2.0	0.0	2.0	0.0	0.0
Merged-chr7-126747924-2	chr7	126747424	126748424	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-11702.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70705139-1	chr17	70704639	70705639	+	558.0	f0_balb.idr	intron (NM_001360665, intron 9 of 14)	intron (NM_001360665, intron 9 of 14)	141638.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	2.5
Merged-chr6-136807604-2	chr6	136807090	136808090	+	558.0	f0_c57.idr|f1_balb.idr	promoter-TSS (NM_177688)	promoter-TSS (NM_177688)	-658.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	8.5	24.0	18.0	3.0	10.5	9.5
Merged-chr11-78511578-2	chr11	78511078	78512078	+	558.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026389)	promoter-TSS (NM_026389)	590.0	NM_199199	195040.0	Mm.383431	NM_199199	ENSMUSG00000051232	Tmem199	AI316787|AI848469|R74819	transmembrane protein 199	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59678505-2	chr9	59678005	59679005	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253883, intron 10 of 10)	intron (NM_001253883, intron 10 of 10)	22137.0	NM_011099	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34288408-1	chr17	34287908	34288908	+	558.0	f1_c57bl6.idr	promoter-TSS (NM_010378)	promoter-TSS (NM_010378)	-637.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	75.5	160.0	71.5	22.5	98.5	32.5
Merged-chr5-145931284-1	chr5	145930784	145931784	+	558.0	f1_balb.idr	Intergenic	L1Md_F2|LINE|L1	-51430.0	NM_007818	13112.0	Mm.332844	NM_007818	ENSMUSG00000056035	Cyp3a11	AI256190|Cyp3a|IIIAm1|Pcn	cytochrome P450, family 3, subfamily a, polypeptide 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-179760357-2	chr1	179759857	179760857	+	558.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026375, exon 30 of 36)	exon (NM_026375, exon 30 of 36)	43658.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-35700168-2	chr5	35699668	35700668	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359895, intron 16 of 17)	intron (NM_001359895, intron 16 of 17)	-20388.0	NM_030127	78558.0	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141572838-1	chr4	141572338	141573338	+	558.0	f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	26676.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	0.0	1.0	6.5	0.0	2.5	9.0
Merged-chr6-119897766-1	chr6	119897266	119898266	+	558.0	f0_balb.idr	Intergenic	Intergenic	-4932.0	NM_001166382	19365.0	Mm.149	NM_011236	ENSMUSG00000030166	Rad52	Rad52yh	RAD52 homolog, DNA repair protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150630820-2	chr4	150630320	150631320	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355737, intron 8 of 8)	intron (NM_001355737, intron 8 of 8)	21354.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24821702-2	chr5	24821202	24822202	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053075, intron 1 of 7)	intron (NM_053075, intron 1 of 7)	20659.0	NM_053075	19744.0	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-4870366-2	chr3	4869833	4870833	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	71625.0	NR_045272	100503859.0	Mm.75172	NR_045272	ENSMUSG00000098659	1110015O18Rik	-	RIKEN cDNA 1110015O18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-12916990-2	chr10	12916490	12917490	+	558.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_038027, exon 4 of 4)	non-coding (NR_038027, exon 4 of 4)	6137.0	NR_038027	320273.0	Mm.417706	NR_038027	ENSMUSG00000097378	B230208H11Rik	-	RIKEN cDNA B230208H11 gene	ncRNA	0.0	0.0	0.0	2.0	0.0	0.0
Merged-chr17-48045692-2	chr17	48045192	48046192	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7399.0	NM_029689	76651.0	Mm.76918	NM_029689	ENSMUSG00000094928	1700122O11Rik	-	RIKEN cDNA 1700122O11 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150868882-1	chr2	150868382	150869382	+	558.0	f0_balb.idr	intron (NR_151505, intron 1 of 12)	L1M4|LINE|L1	-26312.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26507000-1	chr2	26506500	26507500	+	558.0	f1_balb.idr	Intergenic	Intergenic	3073.0	NR_132655	102639736.0		NR_132655		Gm35978	-	predicted gene, 35978	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24552127-1	chr7	24551627	24552627	+	558.0	f0_balb.idr	5' UTR (NM_001360169, exon 1 of 16)	5' UTR (NM_001360169, exon 1 of 16)	640.0	NM_001360169	22594.0	Mm.4347	NM_009532	ENSMUSG00000051768	Xrcc1	Xrcc-1	X-ray repair complementing defective repair in Chinese hamster cells 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25102706-1	chr12	25102206	25103206	+	558.0	f1_balb.idr	Intergenic	Lx9|LINE|L1	-6614.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	9.5	6.0	3.5	2.5	9.0	1.0
Merged-chr6-72426163-2	chr6	72425663	72426663	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019802, intron 7 of 14)	ID_B1|SINE|B4	11855.0	NM_019802	56316.0	Mm.19937	NM_019802	ENSMUSG00000053460	Ggcx	-	gamma-glutamyl carboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153113415-2	chr2	153112915	153113915	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 1 of 12)	LTR16C|LTR|ERVL	4947.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	4.5	5.5	4.5	3.5	0.0	6.0
Merged-chr17-17409224-1	chr17	17408724	17409724	+	558.0	f1_c57bl6.idr	intron (NM_025681, intron 1 of 5)	intron (NM_025681, intron 1 of 5)	6538.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	0.0	0.0	5.0	2.0	0.0	0.0
Merged-chr5-123018247-2	chr5	123017747	123018747	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175423, intron 1 of 1)	B1_Mur3|SINE|Alu	3173.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-3322888-1	chr2	3322388	3323388	+	558.0	f0_balb.idr	intron (NM_008708, intron 11 of 13)	intron (NM_008708, intron 11 of 13)	9740.0	NM_001013376	227522.0	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96863502-1	chr11	96863002	96864002	+	558.0	f1_c57bl6.idr	Intergenic	Intergenic	13109.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	11.0	0.0	1.0	0.0	0.0	6.0
Merged-chr14-121282709-1	chr14	121282209	121283209	+	558.0	f1_balb.idr	3' UTR (NM_134082, exon 27 of 27)	3' UTR (NM_134082, exon 27 of 27)	34003.0	NR_155502	320268.0	Mm.435974	NR_155502		B930095G15Rik	-	RIKEN cDNA B930095G15 gene	ncRNA	5.5	4.5	2.0	5.5	1.5	2.5
Merged-chr15-22750225-1	chr15	22749725	22750725	+	558.0	f1_balb.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-35241.0	NM_001165971	545091.0	Mm.475598	NM_001165971		Hnrnpa1l2-ps2	EG545091|Gm5803	heterogeneous nuclear ribonucleoprotein A1-like 2, pseudogene 2	protein-coding	0.0	0.5	0.0	0.0	0.0	0.5
Merged-chr9-110660366-1	chr9	110659866	110660866	+	558.0	f0_c57.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	3863.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	25.5	57.5	34.5	11.0	23.0	16.5
Merged-chr16-3723973-1	chr16	3723473	3724473	+	558.0	f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-5849.0	NM_001161791	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94870921-2	chr13	94870421	94871421	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4706.0	NM_011021	18420.0	Mm.42051	NM_011021	ENSMUSG00000021685	Otp	-	orthopedia homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-84118273-2	chr6	84117773	84118773	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 30 of 54)	intron (NM_001077694, intron 30 of 54)	98887.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80173124-1	chr11	80172624	80173624	+	558.0	f1_c57bl6.idr	intron (NM_172133, intron 7 of 10)	intron (NM_172133, intron 7 of 10)	-10748.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	23.0	15.0	45.5	16.0	32.5	26.0
Merged-chr12-101971281-2	chr12	101970781	101971781	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4693.0	NM_016856	51786.0	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	0.0	2.0	2.0	1.0	2.0	1.0
Merged-chr14-20758914-2	chr14	20758414	20759414	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360186, intron 12 of 20)	intron (NM_001360186, intron 12 of 20)	-24352.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57804927-1	chr10	57804427	57805427	+	558.0	f0_balb.idr	intron (NM_020561, intron 3 of 7)	AT_rich|Low_complexity|Low_complexity	10383.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134454247-1	chr6	134453747	134454747	+	558.0	f0_balb.idr	intron (NM_008514, intron 21 of 22)	intron (NM_008514, intron 21 of 22)	39819.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	5.5	12.0	3.5	7.0	2.0	5.5
Merged-chr14-31172159-1	chr14	31171659	31172659	+	558.0	f0_balb.idr	exon (NM_022656, exon 21 of 21)	exon (NM_022656, exon 21 of 21)	-3518.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106676147-1	chr11	106675647	106676647	+	558.0	f1_balb.idr	intron (NM_001305158, intron 12 of 14)	intron (NM_001305158, intron 12 of 14)	39134.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	32.5	118.0	58.0	53.0	94.5	60.0
Merged-chr4-93858183-2	chr4	93857683	93858683	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-522672.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	0.0	0.0	0.0	3.0	0.0	0.0
Merged-chr12-4304223-1	chr12	4303723	4304723	+	558.0	f1_c57bl6.idr	intron (NM_010881, intron 10 of 22)	L1MA8|LINE|L1	70196.0	NM_001204912	69709.0	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-146416516-1	chr2	146416016	146417016	+	558.0	f0_c57.idr	intron (NM_001033348, intron 16 of 40)	intron (NM_001033348, intron 16 of 40)	95488.0	NM_001033348	241694.0	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding	8.0	12.5	3.5	0.5	11.0	13.0
Merged-chr4-133601338-1	chr4	133600838	133601838	+	558.0	f1_c57bl6.idr	exon (NM_018754, exon 1 of 1)	exon (NM_018754, exon 1 of 1)	830.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	0.0	3.0	4.5	0.5	0.0	1.0
Merged-chr19-46620142-2	chr19	46619642	46620642	+	557.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177812, intron 2 of 4)	intron (NM_001177812, intron 2 of 4)	-3259.0	NM_001177813	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48084542-2	chr17	48084042	48085042	+	557.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_110485, intron 1 of 2)	intron (NR_110485, intron 1 of 2)	-5090.0	NM_026625	68224.0	Mm.138490	NM_026625	ENSMUSG00000021545	1700067P10Rik	-	RIKEN cDNA 1700067P10 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80048411-3	chr17	80047934	80048934	+	557.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152119, intron 6 of 13)	intron (NR_152119, intron 6 of 13)	13834.0	NR_152119	72692.0	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165154368-3	chr1	165153901	165154901	+	557.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032005, intron 1 of 7)	intron (NM_032005, intron 1 of 7)	6372.0	NM_032005	83993.0	Mm.190649	NM_032005	ENSMUSG00000026572	Tbx19	AU019250|D1Ertd754e|Tpit	T-box 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-115740983-2	chr4	115740483	115741483	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172698, intron 2 of 11)	intron (NM_172698, intron 2 of 11)	2910.0	NM_172698	230648.0	Mm.283565	NM_172698	ENSMUSG00000034210	Efcab14	4732418C07Rik	EF-hand calcium binding domain 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32347876-2	chr18	32347376	32348376	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-29341.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52998820-2	chr2	52998303	52999303	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	140935.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-122746538-2	chr10	122746038	122747038	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	67223.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97443596-2	chr6	97443096	97444096	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	15690.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29357518-2	chr6	29357018	29358018	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_184053, intron 2 of 6)	intron (NM_184053, intron 2 of 6)	9412.0	NM_007594	12321.0	Mm.392075	NM_007594	ENSMUSG00000029767	Calu	9530075H20Rik	calumenin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93467084-2	chr2	93466584	93467584	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040532, intron 3 of 4)	intron (NR_040532, intron 3 of 4)	-4134.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	5.5	3.0	1.0	6.0	0.5	1.5
Merged-chr1-34225705-2	chr1	34225205	34226205	+	557.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133833, exon 51 of 93)	exon (NM_133833, exon 51 of 93)	65375.0	NM_010081	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87695938-2	chr16	87695438	87696438	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3016.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70174853-2	chr14	70174353	70175353	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145978, intron 2 of 9)	intron (NM_145978, intron 2 of 9)	1962.0	NM_001253736	213019.0	Mm.283968	NM_145978	ENSMUSG00000022090	Pdlim2	4732462F18Rik|Slim	PDZ and LIM domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-88500988-1	chr6	88500488	88501488	+	557.5	f0_balb.idr	Intergenic	Intergenic	17812.0	NM_016906	53421.0	Mm.28375	NM_016906	ENSMUSG00000030082	Sec61a1	AA408394|AA410007|Sec61a	Sec61 alpha 1 subunit (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5934848-2	chr19	5934348	5935348	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-10032.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107287419-2	chr3	107286919	107287919	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-3811.0	NM_001310705	229699.0	Mm.38384	NM_146136	ENSMUSG00000027896	Slc16a4	AW146050|MCT 5	solute carrier family 16 (monocarboxylic acid transporters), member 4	protein-coding	4.0	0.0	0.0	2.0	0.0	0.0
Merged-chr10-121396465-2	chr10	121395965	121396965	+	557.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029364, exon 14 of 14)	3' UTR (NM_029364, exon 14 of 14)	31375.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr16-70335778-2	chr16	70335278	70336278	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 1 of 15)	ORR1A4|LTR|ERVL-MaLR	21829.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	2.0	0.0	0.0	0.0	0.0	1.0
Merged-chr4-41740335-2	chr4	41739835	41740835	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286542, intron 1 of 1)	intron (NM_001286542, intron 1 of 1)	1024.0	NM_001286540	18391.0	Mm.425181	NM_011014	ENSMUSG00000036078	Sigmar1	Oprs1|Sig1R|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-100590563-2	chr10	100590063	100591063	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1304.0	NM_175128	68281.0	Mm.268474	NM_175128	ENSMUSG00000046567	4930430F08Rik	4930571E09Rik|A730088G13Rik|AW551239|C430008C19Rik	RIKEN cDNA 4930430F08 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26940671-2	chr17	26940171	26941171	+	557.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281491)	promoter-TSS (NM_001281491)	-781.0	NM_001281491	240057.0	Mm.328888	NM_001281491	ENSMUSG00000067629	Syngap1	Gm1963|Syngap	synaptic Ras GTPase activating protein 1 homolog (rat)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136107999-2	chr1	136107499	136108499	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081023, intron 33 of 43)	intron (NM_001081023, intron 33 of 43)	23184.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95829136-2	chr16	95828636	95829636	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69577.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57448505-2	chr10	57448005	57449005	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37848.0	NR_045353	74928.0	Mm.416643	NR_045353	ENSMUSG00000097370	4930467K11Rik	-	RIKEN cDNA 4930467K11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31351424-2	chr15	31350924	31351924	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027496, intron 1 of 3)	intron (NM_027496, intron 1 of 3)	16335.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-110900085-2	chr2	110899585	110900585	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355246, intron 1 of 3)	Lx2|LINE|L1	50159.0	NM_001355246	228432.0	Mm.483325	NM_001081556	ENSMUSG00000074968	Ano3	AI838058|B230324K02Rik|Tmem16c	anoctamin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132765447-2	chr4	132764947	132765947	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-2913.0	NM_011284	19891.0	Mm.2870	NM_011284	ENSMUSG00000028884	Rpa2	AA409079|AI325195|AU020965|RPA34|Rf-A2	replication protein A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-69162516-2	chr17	69162016	69163016	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	ORR1F|LTR|ERVL-MaLR	3160.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8673094-2	chr12	8672594	8673594	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1040.0	NM_001160221	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56411822-2	chr18	56411322	56412322	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360917, intron 1 of 13)	intron (NM_001360917, intron 1 of 13)	11482.0	NM_001360917	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95002497-2	chr8	95001997	95002997	+	557.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001198894, exon 2 of 14)	exon (NM_001198894, exon 2 of 14)	-15195.0	NM_173036	54672.0	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11037012-2	chr16	11036512	11037512	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28114.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12356634-2	chr15	12356134	12357134	+	557.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081064)	TTS (NM_001081064)	35138.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83733046-2	chr8	83732546	83733546	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 4 of 19)	RLTR40|LTR|ERVK	8265.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	14.0	5.0	7.5	16.5	9.0	6.5
Merged-chr18-32350931-2	chr18	32350436	32351436	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-26281.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	1.0	2.5	0.0	0.0	0.0	1.0
Merged-chr11-118184072-2	chr11	118183572	118184572	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 6 of 12)	intron (NM_001112700, intron 6 of 12)	28670.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79832183-2	chr15	79831683	79832683	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013362, intron 4 of 8)	intron (NM_001013362, intron 4 of 8)	2150.0	NM_001013360	504193.0	Mm.38438	NM_029079	ENSMUSG00000089837	Npcd	Cbx6-Nptxr	neuronal pentraxin chromo domain	protein-coding	1.0	1.5	7.0	12.5	3.5	0.0
Merged-chr4-25979-1	chr4	25479	26479	+	557.5	f1_c57bl6.idr	Intergenic	Intergenic	-3146104.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-99245593-2	chr9	99245093	99246093	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023873, intron 1 of 17)	intron (NM_023873, intron 1 of 17)	2252.0	NM_023873	68121.0	Mm.288739	NM_023873	ENSMUSG00000056267	Cep70	6720484E09Rik|Bite|C030018L16Rik	centrosomal protein 70	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-10894272-1	chr18	10893772	10894772	+	557.5	f0_balb.idr	Intergenic	Intergenic	-108720.0	NR_029781	723959.0		NR_029781	ENSMUSG00000106348	Mir1a-2	Mir1-2|Mirn1-2|mir-1a-2|mmu-mir-1-2|mmu-mir-1a-2	microRNA 1a-2	ncRNA	0.0	0.0	2.5	0.0	0.0	0.0
Merged-chr18-28078167-2	chr18	28077667	28078667	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-481997.0	NR_045398	320624.0	Mm.50107	NR_045398		4930474G06Rik	-	RIKEN cDNA 4930474G06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-66859150-2	chr10	66858650	66859650	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	61234.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66082760-2	chr5	66082260	66083260	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	15419.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-27623746-2	chr8	27623246	27624246	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26B_MM|LTR|ERVK	176076.0	NM_027618	70952.0	Mm.158160	NM_026256	ENSMUSG00000063932	Poteg	4921537P18Rik|4930456F22Rik|Gsarp1|Gsarp2	POTE ankyrin domain family, member G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82869633-2	chr18	82869133	82870133	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13736.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-38190353-1	chr7	38189853	38190853	+	557.5	f1_balb.idr	intron (NM_001085385, intron 2 of 3)	intron (NM_001085385, intron 2 of 3)	6566.0	NM_028166	72244.0	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	0.0	5.0	6.0	0.0	4.5	8.0
Merged-chr19-4157234-2	chr19	4156734	4157734	+	557.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_016933)	TTS (NM_016933)	2588.0	NM_016933	19265.0	Mm.271937	NM_016933	ENSMUSG00000045826	Ptprcap	AI605264|CD-45-AP|LPAP|LSM-1	protein tyrosine phosphatase, receptor type, C polypeptide-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-65075975-2	chr2	65075475	65076475	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53209.0	NM_016719	50915.0	Mm.214554	NM_016719	ENSMUSG00000026888	Grb14	AI505286	growth factor receptor bound protein 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108380458-2	chr3	108379958	108380958	+	557.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026831)	TTS (NM_026831)	3283.0	NR_040560	100038453.0	Mm.214328	NR_040560	ENSMUSG00000074281	Gm12522	-	predicted gene 12522	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80067219-2	chr10	80066719	80067719	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359635, intron 12 of 31)	intron (NM_001359635, intron 12 of 31)	8220.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-43107749-2	chr9	43107249	43108249	+	557.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001034863)	TTS (NM_001034863)	-2031.0	NM_027144	69632.0	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	3.5	1.5	3.0	0.0	0.0	0.0
Merged-chr15-88817296-2	chr15	88816796	88817796	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142357, intron 1 of 9)	intron (NM_001142357, intron 1 of 9)	2022.0	NM_001142357	223774.0	Mm.41512	NM_145477	ENSMUSG00000035845	Alg12	ECM39	asparagine-linked glycosylation 12 (alpha-1,6-mannosyltransferase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129499520-2	chr4	129499020	129500020	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8330.0	NM_001085491	68233.0	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-47259546-2	chr13	47259046	47260046	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65543.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80151724-2	chr11	80151224	80152224	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2438.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57826404-2	chr6	57825904	57826904	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1279.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79932893-2	chr10	79932393	79933393	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001288625, intron 3 of 8)	intron (NM_001288625, intron 3 of 8)	5552.0	NM_001288625	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-62643347-2	chr4	62642847	62643847	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019492, intron 17 of 19)	intron (NM_019492, intron 17 of 19)	23675.0	NM_134257	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134932670-2	chr6	134932170	134933170	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_037956, intron 1 of 1)	intron (NR_037956, intron 1 of 1)	3578.0	NR_037955	381822.0	Mm.5935	NR_037955	ENSMUSG00000098318	Lockd	1190002F15Rik|AI120476|Droc	lncRNA downstream of Cdkn1b	ncRNA	7.0	3.5	8.5	17.5	16.0	16.0
Merged-chr2-163415941-2	chr2	163415441	163416441	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025699, intron 1 of 3)	MT2C_Mm|LTR|ERVL	3529.0	NM_025699	66680.0	Mm.25119	NM_025699	ENSMUSG00000035399	Oser1	3230401D17Rik|AI256769|Perit1	oxidative stress responsive serine rich 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94167352-2	chr13	94166852	94167852	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	109556.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45290771-2	chr9	45290271	45291271	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-21622.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141671693-2	chr4	141671168	141672168	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-7553.0	NM_001033150	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	48.0	65.5	75.5	46.5	73.0	47.5
Merged-chr2-32306023-2	chr2	32305523	32306523	+	557.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133852, exon 25 of 27)	exon (NM_133852, exon 25 of 27)	-12242.0	NR_128563	104795665.0		NR_128563	ENSMUSG00000092765	Gm23363	Mir3154|mir-3154|mmu-mir-3154	predicted gene, 23363	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3469693-2	chr8	3469193	3470193	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1169.0	NM_029598	76406.0	Mm.74996	NM_029598	ENSMUSG00000040340	Tex45	1700019B03Rik	testis expressed 45	protein-coding	0.0	3.5	0.0	0.0	3.5	0.0
Merged-chr16-17048698-2	chr16	17048198	17049198	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21441.0	NM_023249	106369.0	Mm.237941	NM_023249	ENSMUSG00000022773	Ypel1	0610009L05Rik|1700016N17Rik|1700019O22Rik|4921520K19Rik|4930511F14Rik|AV118478|DGL-1|Dgl1|Ppil2|mdgl-1	yippee like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-5575005-2	chr3	5574505	5575505	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008994, intron 1 of 5)	intron (NM_008994, intron 1 of 5)	1243.0	NM_001163301	19302.0	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	0.0	3.5	2.0	0.0	1.0	1.0
Merged-chr12-85960057-2	chr12	85959557	85960557	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	118984.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128700333-2	chr2	128699833	128700833	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	1418.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	15.0	21.0	19.5	16.5	23.0	29.5
Merged-chr19-6455530-2	chr19	6455030	6456030	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205235, intron 6 of 21)	intron (NM_001205235, intron 6 of 21)	36792.0	NM_001205234	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160744272-2	chr2	160743772	160744772	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021280, intron 2 of 33)	intron (NM_021280, intron 2 of 33)	12962.0	NM_021280	18803.0	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61111984-2	chr18	61111484	61112484	+	557.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001037859, exon 5 of 22)	exon (NM_001037859, exon 5 of 22)	-5484.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-72771737-2	chr11	72771237	72772237	+	557.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009671, exon 25 of 25)	3' UTR (NM_009671, exon 25 of 25)	24102.0	NM_001024926	192986.0	Mm.194755	NM_001024926	ENSMUSG00000057778	Cyb5d2	9330151E16Rik|Gm2	cytochrome b5 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84283743-2	chr1	84283243	84284243	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003948, intron 1 of 2)	intron (NM_001003948, intron 1 of 2)	902.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59741906-2	chr9	59741406	59742406	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172069, intron 1 of 2)	MIRc|SINE|MIR	8743.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78327095-2	chr15	78326595	78327595	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358854, intron 2 of 14)	intron (NM_001358854, intron 2 of 14)	1105.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	23.5	16.0	18.0	3.0	3.0	0.0
Merged-chr5-138118164-2	chr5	138117664	138118664	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001044704, intron 2 of 4)	RSINE1|SINE|B4	1259.0	NM_001044705	22697.0	Mm.2760	NM_011757	ENSMUSG00000037017	Zscan21	AI326272|CTfin51|RU49|Zfp-38|Zfp38|Zipro1	zinc finger and SCAN domain containing 21	protein-coding	1.5	4.5	0.5	3.5	13.0	9.5
Merged-chr17-47302024-2	chr17	47301524	47302524	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 5 of 19)	intron (NM_001097623, intron 5 of 19)	-66863.0	NM_001146212	64657.0	Mm.216250	NM_183086	ENSMUSG00000034729	Mrps10	1110038B19Rik|AW743084|Rpms10	mitochondrial ribosomal protein S10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91752541-2	chr6	91752041	91753041	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 14 of 14)	intron (NM_009320, intron 14 of 14)	54852.0	NM_001159507	243547.0	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113658097-2	chr6	113657597	113658597	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	19630.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118173710-2	chr14	118173210	118174210	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	36583.0	NM_021434	58245.0	Mm.275411	NM_021434	ENSMUSG00000022131	Gpr180	AB041545|E130016I23Rik|Itr	G protein-coupled receptor 180	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21030991-2	chr19	21030510	21031510	+	557.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73700.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	3.0	7.0	8.0	11.5	19.5	7.0
Merged-chr1-84198021-2	chr1	84197539	84198539	+	557.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003948, intron 1 of 2)	L1_Mus2|LINE|L1	20922.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53233524-2	chr4	53233024	53234024	+	557.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-12672.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40240400-2	chr4	40239900	40240900	+	557.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172689)	promoter-TSS (NM_172689)	-575.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46027814-2	chr17	46027314	46028314	+	557.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025250, intron 2 of 7)	intron (NM_001025250, intron 2 of 7)	-2651.0	NM_001110268	22339.0	Mm.282184	NM_009505	ENSMUSG00000023951	Vegfa	Vegf|Vpf	vascular endothelial growth factor A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-14222295-2	chr2	14221795	14222795	+	557.166687	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081310)	TTS (NM_001081310)	-7119.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-32143256-2	chr9	32142756	32143756	+	557.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195632, intron 2 of 21)	MTC|LTR|ERVL-MaLR	27120.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83730021-2	chr11	83729521	83730521	+	557.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16919.0	NM_183249	66107.0	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4425824-2	chr19	4425324	4426324	+	557.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007485, exon 5 of 5)	3' UTR (NM_007485, exon 5 of 5)	-13499.0	NR_045990	319314.0	Mm.393810	NR_045989	ENSMUSG00000087132	A930001C03Rik	-	RIKEN cDNA A930001C03 gene	ncRNA	0.0	0.0	2.0	0.0	4.0	0.5
Merged-chr4-58907621-1	chr4	58907121	58908121	+	557.0	f1_balb.idr	intron (NM_001355697, intron 1 of 49)	intron (NM_001355697, intron 1 of 49)	4309.0	NM_001355697	230249.0	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|Ecpas|mKIAA0368	expressed sequence AI314180	protein-coding	0.5	3.0	5.0	2.0	1.0	0.0
Merged-chr10-94375927-1	chr10	94375427	94376427	+	557.0	f1_balb.idr	intron (NM_001359762, intron 1 of 4)	B4A|SINE|B4	63978.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	4.0	0.5	4.5	4.0	0.5	5.5
Merged-chr10-21054949-1	chr10	21054449	21055449	+	557.0	f0_balb.idr	intron (NM_001177776, intron 2 of 6)	intron (NM_001177776, intron 2 of 6)	14129.0	NM_001177776	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	0.0	1.0	0.0	0.0	1.5	0.0
Merged-chr4-45962145-1	chr4	45961645	45962645	+	557.0	f1_balb.idr	Intergenic	Intergenic	-3190.0	NM_001290475	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	6.0	4.0	0.5	0.0	2.0	8.0
Merged-chr1-36298405-2	chr1	36297905	36298905	+	557.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9328.0	NM_001172206	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128300813-1	chr10	128300313	128301313	+	557.0	f1_balb.idr	Intergenic	B2_Mm2|SINE|B2	-2522.0	NM_133992	103135.0	Mm.244183	NM_133992	ENSMUSG00000005682	Pan2	1200014O24Rik|AI047843|AW742773|Usp52|mKIAA0710	PAN2 poly(A) specific ribonuclease subunit	protein-coding	0.0	7.0	2.5	2.5	0.0	2.0
Merged-chr17-49413647-1	chr17	49413147	49414147	+	557.0	f1_balb.idr	Intergenic	B3|SINE|B2	-14717.0	NM_028464	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr4-130001948-1	chr4	130001448	130002448	+	557.0	f0_c57.idr	intron (NM_001199696, intron 2 of 28)	intron (NM_001199696, intron 2 of 28)	9894.0	NM_001290715	230775.0	Mm.262241	NM_173071	ENSMUSG00000028782	Adgrb2	Bai2	adhesion G protein-coupled receptor B2	protein-coding	2.0	7.5	0.0	0.0	0.0	0.5
Merged-chr2-68435768-1	chr2	68435268	68436268	+	557.0	f0_balb.idr	intron (NM_016866, intron 1 of 17)	intron (NM_016866, intron 1 of 17)	36213.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4460710-1	chr7	4460210	4461210	+	557.0	f0_c57.idr	Intergenic	Intergenic	-4025.0	NM_026146	67425.0	Mm.360392	NM_026146	ENSMUSG00000006154	Eps8l1	2310051G19Rik|4632407K17Rik|AW060268|DRC3|EPS8R1	EPS8-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121031945-1	chr10	121031445	121032445	+	557.0	f0_balb.idr	Intergenic	Intergenic	-2059.0	NM_011915	24117.0	Mm.32831	NM_011915	ENSMUSG00000020218	Wif1	AW107799|WIF-1	Wnt inhibitory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69883168-2	chr11	69882668	69883668	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153788, intron 18 of 21)	intron (NM_153788, intron 18 of 21)	-1074.0	NR_105889	102466208.0		NR_105889	ENSMUSG00000104996	Mir6924	mmu-mir-6924	microRNA 6924	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90374165-2	chr3	90373665	90374665	+	557.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15773.0	NM_001316688	26568.0	Mm.45519	NM_011988	ENSMUSG00000027932	Slc27a3	Acsvl3|FATP-3|FATP3|Vlcs-3	solute carrier family 27 (fatty acid transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6404288-2	chr19	6403788	6404788	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011242, intron 5 of 16)	intron (NM_011242, intron 5 of 16)	3705.0	NM_011242	19395.0	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144311862-2	chr2	144311362	144312362	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026924, intron 3 of 3)	intron (NM_026924, intron 3 of 3)	19500.0	NM_152947	107586.0	Mm.252750	NM_026924	ENSMUSG00000037279	Ovol2	1700108N11Rik|1810007D21Rik|M-OVO|M-OVO-A|M-OVO-B|MOVO|Ovo2|Zfp339|movo2	ovo like zinc finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-93996226-1	chr13	93995726	93996726	+	557.0	f1_c57bl6.idr	Intergenic	Intergenic	-61570.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-86703208-1	chr10	86702708	86703708	+	557.0	f0_balb.idr	intron (NM_011631, intron 3 of 17)	intron (NM_011631, intron 3 of 17)	2236.0	NM_011631	22027.0	Mm.87773	NM_011631	ENSMUSG00000020048	Hsp90b1	ERp99|GRP94|TA-3|Targ2|Tra-1|Tra1|endoplasmin|gp96	heat shock protein 90, beta (Grp94), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75949505-2	chr10	75949005	75950005	+	557.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001358532, exon 2 of 2)	3' UTR (NM_001358532, exon 2 of 2)	1205.0	NM_001358532	22364.0	Mm.333851	NM_009514	ENSMUSG00000000903	Vpreb3	8HS-20|AI528709|Vpreb-3	pre-B lymphocyte gene 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75784411-2	chr14	75783911	75784911	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026232, intron 1 of 9)	ORR1A2|LTR|ERVL-MaLR	2626.0	NM_026232	67554.0	Mm.46067	NM_026232	ENSMUSG00000022003	Slc25a30	4933433D23Rik|AV025504|AV221431|AW319655|KMCP1	solute carrier family 25, member 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62220933-1	chr18	62220433	62221433	+	557.0	f1_c57bl6.idr	Intergenic	L1MA10|LINE|L1	40833.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	0.0	1.5	0.5	0.0	0.0	0.0
Merged-chr4-45517225-1	chr4	45516725	45517725	+	557.0	f1_balb.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	13603.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	0.0	0.0	4.5	0.0	2.5	7.0
Merged-chr13-49172737-2	chr13	49172237	49173237	+	557.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14810.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-75220047-2	chr8	75219547	75220547	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029182, intron 2 of 2)	intron (NM_029182, intron 2 of 2)	6103.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141622689-1	chr4	141622189	141623189	+	557.0	f1_c57bl6.idr	intron (NM_001013780, intron 1 of 4)	ID_B1|SINE|B4	1145.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	3.0	2.5	3.5	0.0	0.0	4.5
Merged-chr2-143988944-1	chr2	143988444	143989444	+	557.0	f0_c57.idr	exon (NM_024281, exon 2 of 24)	exon (NM_024281, exon 2 of 24)	22319.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-86809233-2	chr8	86808733	86809733	+	557.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63227.0	NM_009172	20437.0	Mm.324553	NM_009172	ENSMUSG00000036840	Siah1a	AA982064|AI853500|Sinh1a	siah E3 ubiquitin protein ligase 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65170782-1	chr18	65170282	65171282	+	557.0	f0_balb.idr	intron (NM_001114386, intron 13 of 30)	intron (NM_001114386, intron 13 of 30)	-78079.0	NR_029600	387231.0		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67318855-2	chr7	67318355	67319355	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 2 of 11)	L1M3|LINE|L1	54003.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-25203355-1	chr19	25202855	25203855	+	557.0	f1_c57bl6.idr	TTS (NM_028785)	TTS (NM_028785)	-33620.0	NM_181404	107351.0	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr4-58749774-1	chr4	58749274	58750274	+	557.0	f1_balb.idr	Intergenic	RLTR31D_MM|LTR|ERVK	35946.0	NM_146920	258922.0	Mm.223327	NM_146920	ENSMUSG00000043385	Olfr267	MOR262-1	olfactory receptor 267	protein-coding	0.5	3.5	3.0	0.0	0.5	2.5
Merged-chr13-64260531-1	chr13	64260031	64261031	+	557.0	f1_c57bl6.idr	intron (NR_045798, intron 1 of 2)	RMER15|LTR|ERVL	11831.0	NR_045798	66503.0	Mm.443331	NR_045798	ENSMUSG00000097101	1810034E14Rik	-	RIKEN cDNA 1810034E14 gene	ncRNA	2.0	12.5	2.5	4.0	1.5	1.0
Merged-chr13-98835388-1	chr13	98834888	98835888	+	557.0	f1_balb.idr	Intergenic	B1_Mus1|SINE|Alu	-19939.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	2.5	7.0	2.0	1.0	7.0	0.0
Merged-chr1-152542777-2	chr1	152542277	152543277	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 9 of 17)	intron (NM_016846, intron 9 of 17)	82440.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-125624196-1	chr7	125623696	125624696	+	557.0	f1_balb.idr	intron (NM_021887, intron 2 of 8)	intron (NM_021887, intron 2 of 8)	20767.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	37.0	59.0	30.0	35.5	99.0	68.5
Merged-chr11-119261855-1	chr11	119261355	119262355	+	557.0	f1_balb.idr	intron (NM_175430, intron 17 of 18)	intron (NM_175430, intron 17 of 18)	-6108.0	NM_001159324	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-69274121-2	chr10	69273621	69274621	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252638, intron 8 of 11)	intron (NM_001252638, intron 8 of 11)	60927.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143470556-1	chr5	143470056	143471056	+	557.0	f0_balb.idr	intron (NM_144915, intron 2 of 14)	Lx8|LINE|L1	6063.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120135911-1	chr8	120135411	120136411	+	557.0	f1_c57bl6.idr	intron (NM_172286, intron 1 of 12)	intron (NM_172286, intron 1 of 12)	-9018.0	NM_001163760	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147911717-1	chr4	147911217	147912217	+	557.0	f1_balb.idr	intron (NM_011122, intron 18 of 18)	B1_Mur2|SINE|Alu	-6808.0	NM_001285921	170731.0	Mm.154312	NM_133201	ENSMUSG00000029020	Mfn2	D630023P19Rik|Fzo	mitofusin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60813199-1	chr2	60812699	60813699	+	557.0	f0_balb.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	68239.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103124287-2	chr3	103123787	103124787	+	557.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3269.0	NM_177857	329727.0	Mm.293641	NM_177857	ENSMUSG00000007379	Dennd2c	A930010I20Rik	DENN/MADD domain containing 2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81542618-2	chr10	81542118	81543118	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010301, intron 1 of 6)	intron (NM_010301, intron 1 of 6)	2428.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-121709233-2	chr11	121708733	121709733	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144797, intron 2 of 3)	RMER4A|LTR|ERVK	6806.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114886204-1	chr6	114885704	114886704	+	557.0	f0_balb.idr	intron (NM_001356371, intron 3 of 5)	intron (NM_001356371, intron 3 of 5)	35617.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-62751880-1	chr5	62751380	62752380	+	557.0	f0_balb.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	14297.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122127640-1	chr2	122127140	122128140	+	557.0	f1_c57bl6.idr	intron (NM_026251, intron 5 of 17)	intron (NM_026251, intron 5 of 17)	-9254.0	NM_145531	214585.0	Mm.222303	NM_145531	ENSMUSG00000033396	Spg11	6030465E24Rik|A330015I11|C530005A01Rik	SPG11, spatacsin vesicle trafficking associated	protein-coding	4.0	0.5	0.5	0.5	9.0	1.0
Merged-chr5-62753382-2	chr5	62752882	62753882	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	12795.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-85161909-1	chr10	85161409	85162409	+	557.0	f0_balb.idr	intron (NM_007771, intron 1 of 12)	intron (NM_007771, intron 1 of 12)	23145.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-33842365-2	chr8	33841865	33842865	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042675, intron 4 of 6)	intron (NM_001042675, intron 4 of 6)	87498.0	NM_019733	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	10.5	9.5	3.0	4.5	0.0	5.5
Merged-chr11-110107408-1	chr11	110106908	110107908	+	557.0	f1_balb.idr	intron (NM_147220, intron 35 of 38)	intron (NM_147220, intron 35 of 38)	-11471.0	NM_153145	217258.0	Mm.344148	NM_153145	ENSMUSG00000041828	Abca8a	-	ATP-binding cassette, sub-family A (ABC1), member 8a	protein-coding	0.0	11.5	4.0	0.0	0.0	1.5
Merged-chr18-66480289-1	chr18	66479789	66480789	+	557.0	f1_c57bl6.idr	Intergenic	B3|SINE|B2	21685.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-145618403-1	chr3	145617903	145618903	+	557.0	f1_c57bl6.idr	Intergenic	Intergenic	31582.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99134968-1	chr7	99134468	99135468	+	557.0	f1_c57bl6.idr	intron (NM_178635, intron 1 of 14)	B1_Mus1|SINE|Alu	6176.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	52.0	70.5	56.0	45.0	75.5	43.5
Merged-chr9-118099646-2	chr9	118099146	118100146	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026442, intron 2 of 3)	intron (NM_026442, intron 2 of 3)	50550.0	NM_026442	67899.0	Mm.9953	NM_026442	ENSMUSG00000039163	Cmc1	2010110K16Rik|2010312P05Rik|AI596001	COX assembly mitochondrial protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154910192-1	chr4	154909692	154910692	+	557.0	f1_balb.idr	Intergenic	Intergenic	-11149.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	35.0	51.0	22.5	31.5	40.0	18.5
Merged-chr12-91161424-1	chr12	91160924	91161924	+	557.0	f0_balb.idr	intron (NM_181815, intron 20 of 25)	intron (NM_181815, intron 20 of 25)	51195.0	NR_030473	735273.0		NR_030473	ENSMUSG00000076118	Mir669c	Mirn669c|Mirn669c-1	microRNA 669c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-62937787-2	chr14	62937287	62938287	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175546, intron 6 of 11)	intron (NM_175546, intron 6 of 11)	46723.0	NM_001037751	432867.0	Mm.99387	NM_001037751	ENSMUSG00000075574	Defb48	Defb42|EG432867	defensin beta 48	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102628433-1	chr12	102627933	102628933	+	557.0	f0_c57.idr	intron (NM_172584, intron 2 of 9)	intron (NM_172584, intron 2 of 9)	56587.0	NR_035457	100316812.0		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102001930-2	chr5	102001430	102002430	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	B3A|SINE|B2	67991.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	9.5	9.5	10.0	3.0	5.5	4.0
Merged-chr13-99005993-1	chr13	99005493	99006493	+	557.0	f0_balb.idr	Intergenic	L1ME3Cz|LINE|L1	-21428.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99249059-1	chr7	99248559	99249559	+	557.0	f1_balb.idr	Intergenic	CpG	-10448.0	NM_177448	233549.0	Mm.208030	NM_177448	ENSMUSG00000052396	Mogat2	DGAT2L5|MGAT2|Mgat1l	monoacylglycerol O-acyltransferase 2	protein-coding	0.0	0.0	6.5	0.0	0.5	0.0
Merged-chr13-52223892-2	chr13	52223392	52224392	+	557.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	127151.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145275547-1	chr6	145275047	145276047	+	557.0	f1_balb.idr	Intergenic	Intergenic	24995.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	21.5	56.5	28.0	40.5	48.5	38.0
Merged-chr10-60094517-2	chr10	60094017	60095017	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026937, intron 9 of 10)	intron (NM_026937, intron 9 of 10)	-11740.0	NM_052994	94214.0	Mm.153429	NM_052994	ENSMUSG00000058297	Spock2	AA407235|Gcap26|mKIAA0275	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-131853723-2	chr4	131853223	131854223	+	557.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_025297, exon 2 of 10)	exon (NM_025297, exon 2 of 10)	10252.0	NM_025297	26922.0	Mm.192706	NM_025297	ENSMUSG00000028910	Mecr	AI195831|NRBF-1|Nrbf1	mitochondrial trans-2-enoyl-CoA reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-28807580-2	chr3	28807080	28808080	+	557.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026517)	TTS (NM_026517)	2072.0	NM_026517	68028.0	Mm.21724	NM_026517	ENSMUSG00000039221	Rpl22l1	3110001N18Rik|AU041196	ribosomal protein L22 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-53377980-2	chr16	53377480	53378480	+	557.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-562236.0	NR_040495	73820.0	Mm.60493	NR_040495		4930404A05Rik	-	RIKEN cDNA 4930404A05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-63925990-1	chr11	63925490	63926490	+	557.0	f1_balb.idr	Intergenic	Intergenic	-3706.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	0.0	0.0	0.0	3.0	0.0	1.0
Merged-chr7-125762530-1	chr7	125762030	125763030	+	557.0	f0_balb.idr	intron (NM_001358287, intron 4 of 26)	intron (NM_001358287, intron 4 of 26)	54660.0	NM_001358287	233865.0	Mm.274389	NM_001081022	ENSMUSG00000032743	D430042O09Rik	Kiaa0556	RIKEN cDNA D430042O09 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21510254-1	chr19	21509754	21510754	+	557.0	f0_balb.idr	Intergenic	LTR16E1|LTR|ERVL	-37593.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	0.0	13.0	3.0	0.0	2.5	0.0
Merged-chr2-85123973-1	chr2	85123473	85124473	+	557.0	f1_balb.idr	Intergenic	Intergenic	-12387.0	NM_011784	23796.0	Mm.29368	NM_011784	ENSMUSG00000044338	Aplnr	APJ|Agtrl1|msr/apj	apelin receptor	protein-coding	2.0	0.0	0.0	1.0	2.0	1.0
Merged-chr11-76998207-1	chr11	76997707	76998707	+	557.0	f1_balb.idr	promoter-TSS (NM_010484)	promoter-TSS (NM_010484)	-390.0	NM_010484	15567.0	Mm.300318	NM_010484	ENSMUSG00000020838	Slc6a4	5-HTT|AI323329|Htt|Sert	solute carrier family 6 (neurotransmitter transporter, serotonin), member 4	protein-coding	0.0	0.0	2.0	0.5	0.0	0.0
Merged-chr10-128134524-2	chr10	128134024	128135024	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039080, intron 11 of 13)	intron (NM_001039080, intron 11 of 13)	41741.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-55224446-2	chr10	55223946	55224946	+	557.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F|LINE|L1	-882471.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113491816-2	chr13	113491316	113492316	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 1 of 6)	intron (NR_045501, intron 1 of 6)	11028.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53130309-2	chr15	53129809	53130809	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	215874.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44722225-1	chr9	44721725	44722725	+	557.0	f1_balb.idr	intron (NM_153537, intron 4 of 21)	B3|SINE|B2	12973.0	NM_153537	102693.0	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45726670-2	chr7	45726170	45727170	+	557.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027055)	promoter-TSS (NM_027055)	-854.0	NM_027055	69363.0	Mm.45607	NM_027055	ENSMUSG00000070563	Spaca4	1700008E09Rik|AV043694|Samp14	sperm acrosome associated 4	protein-coding	1.0	0.0	2.0	1.0	0.0	0.0
Merged-chr8-32756630-1	chr8	32756130	32757130	+	557.0	f1_c57bl6.idr	Intergenic	Intergenic	193396.0	NM_001177589	100042715.0	Mm.291093	NM_001177589		Gm3985	-	predicted gene 3985	protein-coding	2.5	1.5	0.0	1.5	0.0	0.0
Merged-chr5-43912734-2	chr5	43912234	43913234	+	557.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007646)	TTS (NM_007646)	43925.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	5.5	10.0	0.0	5.5	6.5	0.0
Merged-chr15-101174843-1	chr15	101174343	101175343	+	557.0	f1_balb.idr	intron (NM_007395, intron 1 of 8)	intron (NM_007395, intron 1 of 8)	771.0	NM_007395	11479.0	Mm.308467	NM_007395	ENSMUSG00000000532	Acvr1b	6820432J04|ALK-4|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20896517-1	chr9	20896017	20897017	+	557.0	f1_balb.idr	intron (NM_016876, intron 5 of 10)	intron (NM_016876, intron 5 of 10)	2073.0	NM_016876	53356.0	Mm.427309	NM_016876	ENSMUSG00000070319	Eif3g	44kDa|D0Jmb4|Eif3s4|TU-189B2|eIF3-p44|p44	eukaryotic translation initiation factor 3, subunit G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-74909253-3	chr14	74908761	74909761	+	557.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	38616.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38060848-2	chr15	38060348	38061348	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112721, intron 1 of 58)	intron (NM_001112721, intron 1 of 58)	18006.0	NM_001112721	70790.0	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-76860319-2	chr18	76859819	76860819	+	557.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001109743, exon 2 of 9)	exon (NM_001109743, exon 2 of 9)	3914.0	NM_001109743	664805.0	Mm.329543	NM_001109743	ENSMUSG00000091519	Skor2	Corl2|EG664805|Fussel18|Gm7348	SKI family transcriptional corepressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-95421139-1	chr14	95420639	95421639	+	557.0	f1_c57bl6.idr	Intergenic	Intergenic	-460115.0	NM_001358241	66732.0	Mm.75060	NM_025733	ENSMUSG00000034689	4921530L21Rik	-	RIKEN cDNA 4921530L21 gene	protein-coding	4.0	3.0	0.0	0.0	2.5	0.0
Merged-chr17-80005141-2	chr17	80004641	80005641	+	557.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57127.0	NR_152119	72692.0	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70409543-2	chr11	70409043	70410043	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029231, intron 1 of 16)	intron (NM_029231, intron 1 of 16)	488.0	NM_029231	75273.0	Mm.340601	NM_029231	ENSMUSG00000018921	Pelp1	4930563C04Rik|MNAR	proline, glutamic acid and leucine rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-44715647-1	chr3	44715147	44716147	+	557.0	f0_balb.idr	Intergenic	Intergenic	662613.0	NR_045172	72511.0	Mm.140700	NR_045172	ENSMUSG00000097040	2610316D01Rik	-	RIKEN cDNA 2610316D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121458656-3	chr9	121458151	121459151	+	557.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357968, intron 12 of 14)	intron (NM_001357968, intron 12 of 14)	37043.0	NM_001284508	12424.0	Mm.2619	NM_031161	ENSMUSG00000032532	Cck	-	cholecystokinin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145372314-2	chr2	145371814	145372814	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053195, intron 2 of 16)	intron (NM_053195, intron 2 of 16)	129703.0	NM_053195	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-112921199-2	chr10	112920699	112921699	+	557.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7827.0	NM_001033474	382423.0	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132	ataxin 7-like 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119263511-1	chr11	119263011	119264011	+	557.0	f1_balb.idr	intron (NM_175430, intron 18 of 18)	intron (NM_175430, intron 18 of 18)	-4452.0	NM_001159324	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	0.0	1.5	0.0	0.0	2.5	1.0
Merged-chr9-116104044-1	chr9	116103544	116104544	+	557.0	f1_balb.idr	intron (NM_029575, intron 5 of 6)	MTD|LTR|ERVL-MaLR	71319.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	4.0	13.0	12.5	8.0	19.5	11.0
Merged-chr5-135611896-1	chr5	135611396	135612396	+	557.0	f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-20758.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	0.0	0.0	0.0	6.0	2.0	4.0
Merged-chr1-180764951-2	chr1	180764451	180765451	+	557.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	38908.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11431670-2	chr8	11431170	11432170	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009932, intron 30 of 47)	intron (NM_009932, intron 30 of 47)	-46259.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16571428-1	chr7	16570928	16571928	+	557.0	f1_balb.idr	intron (NM_172739, intron 1 of 6)	intron (NM_172739, intron 1 of 6)	-42396.0	NR_136928	102634559.0	Mm.421602	NR_136928	ENSMUSG00000100583	Gm29443	-	predicted gene 29443	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55324552-2	chr13	55324052	55325052	+	557.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_016662)	TTS (NM_016662)	2497.0	NM_025596	66494.0	Mm.439805	NM_025596	ENSMUSG00000021486	Prelid1	2610524G07Rik|Preli	PRELI domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-76932136-1	chr18	76931636	76932636	+	557.0	f1_balb.idr	intron (NM_025409, intron 1 of 2)	B2_Mm2|SINE|B2	2109.0	NM_025409	66191.0	Mm.28593	NM_025409	ENSMUSG00000090000	Ier3ip1	1110057H19Rik|AI644142|AL022842|AL022863|AV026606	immediate early response 3 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27624276-1	chr15	27623776	27624776	+	557.0	f1_balb.idr	intron (NM_001013792, intron 1 of 6)	intron (NM_001013792, intron 1 of 6)	6417.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-9224826-2	chr5	9224326	9225326	+	557.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-41292.0	NR_153370	231014.0	Mm.130063	NM_172706	ENSMUSG00000056004	9330182L06Rik	Eig121l	RIKEN cDNA 9330182L06 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-6142726-1	chr8	6142226	6143226	+	557.0	f1_c57bl6.idr	Intergenic	Intergenic	-1037439.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	38.5	84.0	53.5	1.0	6.5	0.5
Merged-chr1-92945126-2	chr1	92944626	92945626	+	557.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011796, exon 9 of 12)	exon (NM_011796, exon 9 of 12)	5464.0	NR_015525	100037260.0	Mm.442236	NR_015525	ENSMUSG00000100632	9430060I03Rik	-	RIKEN cDNA 9430060I03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-104850710-2	chr12	104850210	104851210	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040682, intron 1 of 12)	intron (NM_001040682, intron 1 of 12)	14366.0	NR_104436	94040.0	Mm.244078	NM_053155	ENSMUSG00000021097	Clmn	9330188N17Rik|AI428889|AI788815|mKIAA1188	calmin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143512460-1	chr5	143511960	143512960	+	557.0	f0_balb.idr	intron (NM_001347530, intron 3 of 6)	intron (NM_001347530, intron 3 of 6)	15533.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34189688-1	chr13	34189188	34190188	+	557.0	f0_balb.idr	intron (NM_001033167, intron 10 of 10)	MTC|LTR|ERVL-MaLR	26724.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132303747-2	chr7	132303247	132304247	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029935, intron 1 of 7)	L1MB8|LINE|L1	-11917.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32290738-2	chr2	32290238	32291238	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080968, intron 1 of 25)	intron (NM_001080968, intron 1 of 25)	2485.0	NM_001080968	99412.0	Mm.106376	NM_133852	ENSMUSG00000002546	Golga2	AW555139|GM130|mKIAA4150	golgi autoantigen, golgin subfamily a, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155121576-1	chr1	155121076	155122076	+	557.0	f0_c57.idr	Intergenic	L1_Mus4|LINE|L1	-21940.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141713255-1	chr4	141712755	141713755	+	557.0	f1_balb.idr	intron (NM_001017966, intron 2 of 9)	intron (NM_001017966, intron 2 of 9)	10164.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	17.5	8.0	12.5	13.5	16.0	16.5
Merged-chr1-136568863-2	chr1	136568363	136569363	+	557.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56038.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24297828-2	chr7	24297328	24298328	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009561, intron 2 of 6)	(CA)n|Simple_repeat|Simple_repeat	1721.0	NM_009561	22719.0	Mm.12832	NM_009561	ENSMUSG00000050605	Zfp61	-	zinc finger protein 61	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65175190-2	chr3	65174690	65175690	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_126080, intron 3 of 4)	intron (NR_126080, intron 3 of 4)	-12913.0	NM_001289450	16497.0	Mm.316402	NM_010597	ENSMUSG00000027827	Kcnab1	Akr8a8|Kvbeta1.1|mKv(beta)1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding	0.0	7.5	0.0	0.0	0.0	2.0
Merged-chr19-43529453-2	chr19	43528953	43529953	+	557.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4848.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141731570-1	chr4	141731070	141732070	+	557.0	f0_balb.idr	Intergenic	Intergenic	-8151.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	23.5	49.5	25.5	38.0	57.0	76.5
Merged-chr11-118409662-2	chr11	118409162	118410162	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025617, intron 3 of 4)	intron (NM_001025617, intron 3 of 4)	6138.0	NM_001267591	76025.0	Mm.177551	NM_029502	ENSMUSG00000025575	Cant1	5830420C20Rik|Apy1h|D11Bwg0554e|Entpd8|SCAN-1|Shapy	calcium activated nucleotidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78130195-1	chr10	78129695	78130695	+	557.0	f0_c57.idr	Intergenic	Intergenic	39573.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4366456-2	chr8	4365956	4366956	+	557.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16868.0	NM_009138	20300.0	Mm.7275	NM_009138	ENSMUSG00000023235	Ccl25	A130072A22Rik|AI852536|CKb15|Scya25|TECK	chemokine (C-C motif) ligand 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145289385-1	chr4	145288885	145289885	+	557.0	f1_c57bl6.idr	intron (NM_009401, intron 6 of 12)	RLTR13D5|LTR|ERVK	25762.0	NM_009401	21941.0	Mm.12810	NM_009401	ENSMUSG00000028602	Tnfrsf8	Cd30|D1S166E|Ki|Ki-1	tumor necrosis factor receptor superfamily, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123768547-1	chr9	123768047	123769047	+	557.0	f0_c57.idr	intron (NM_009913, intron 1 of 2)	intron (NM_009913, intron 1 of 2)	1336.0	NM_001166625	12769.0	Mm.440604	NM_009913	ENSMUSG00000029530	Ccr9	A130091K22Rik|Cmkbr10|GPR-9-6	chemokine (C-C motif) receptor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107045617-2	chr4	107045117	107046117	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355532, intron 11 of 14)	intron (NM_001355532, intron 11 of 14)	21249.0	NM_025500	56280.0	Mm.29517	NM_025500	ENSMUSG00000028622	Mrpl37	2300004O14Rik|AI132596|MRP-L2|Rpml2	mitochondrial ribosomal protein L37	protein-coding	0.0	0.0	0.0	0.0	0.0	3.0
Merged-chr4-134944849-2	chr4	134944349	134945349	+	557.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	13869.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46531837-1	chr19	46531337	46532337	+	557.0	f0_balb.idr	intron (NM_019718, intron 5 of 5)	intron (NM_019718, intron 5 of 5)	30189.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	4.0	5.5
Merged-chr9-108653191-1	chr9	108652691	108653691	+	557.0	f1_c57bl6.idr	intron (NM_001357285, intron 1 of 15)	ID_B1|SINE|B4	490.0	NM_001357285	23807.0	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117800710-2	chr8	117800210	117801210	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357233, intron 1 of 4)	intron (NM_001357233, intron 1 of 4)	1264.0	NM_001357233	68533.0	Mm.181836	NM_026758	ENSMUSG00000031843	Mphosph6	1110001M01Rik|AA536809|C86426	M phase phosphoprotein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-41892134-2	chr6	41891634	41892634	+	557.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31795.0	NM_032542	84543.0	Mm.138766	NM_032542	ENSMUSG00000014104	Sval2	SLP-M	seminal vesicle antigen-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126198382-1	chr4	126197882	126198882	+	557.0	f1_balb.idr	intron (NM_001356455, intron 1 of 11)	intron (NM_001356455, intron 1 of 11)	2625.0	NM_001356456	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	11.0	14.0	21.0	16.5	17.0	8.0
Merged-chr1-153408575-1	chr1	153408075	153409075	+	557.0	f0_c57.idr	intron (NR_033736, intron 1 of 3)	intron (NR_033736, intron 1 of 3)	5658.0	NR_033736	626058.0	Mm.31556	NM_001177359		E330020D12Rik	EG626058|F430003O07Rik|Gm6648	Riken cDNA E330020D12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52992851-1	chr2	52992351	52993351	+	557.0	f1_balb.idr	intron (NM_172409, intron 1 of 26)	ID_B1|SINE|B4	134983.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-18142626-2	chr15	18142126	18143126	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045711, intron 9 of 11)	intron (NR_045711, intron 9 of 11)	227001.0	NR_045711	70886.0	Mm.399021	NR_045711	ENSMUSG00000098150	4921515E04Rik	-	RIKEN cDNA 4921515E04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-43060266-1	chr17	43059766	43060766	+	557.0	f0_balb.idr	intron (NM_178589, intron 3 of 5)	intron (NM_178589, intron 3 of 5)	43711.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	9.5	57.5	65.0	53.0	114.5	104.0
Merged-chr6-83647692-2	chr6	83647192	83648192	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016751, intron 4 of 6)	MER5A|DNA|hAT-Charlie	8424.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-28709941-1	chr3	28709441	28710441	+	557.0	f1_balb.idr	intron (NM_031197, intron 3 of 10)	intron (NM_031197, intron 3 of 10)	12038.0	NM_031197	20526.0	Mm.18443	NM_031197	ENSMUSG00000027690	Slc2a2	AI266973|Glut-2|Glut2	solute carrier family 2 (facilitated glucose transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93068224-1	chr10	93067724	93068724	+	557.0	f1_c57bl6.idr	intron (NM_001347060, intron 2 of 67)	RMER5|LTR|ERV1	13372.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	9.5	6.5	16.0	0.0	3.0	2.0
Merged-chr1-16217946-1	chr1	16217446	16218446	+	557.0	f1_c57bl6.idr	Intergenic	Intergenic	112064.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-15758035-2	chr6	15757535	15758535	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 3 of 4)	L1_Mus3|LINE|L1	37374.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80081887-2	chr7	80081386	80082386	+	557.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001146000, exon 2 of 6)	exon (NM_001146000, exon 2 of 6)	-6629.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	0.0	0.0	1.5	19.5	3.0	7.5
Merged-chr15-59383168-2	chr15	59382668	59383668	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 2 of 4)	ORR1D1|LTR|ERVL-MaLR	8970.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33889289-1	chr17	33888789	33889789	+	557.0	f1_balb.idr	intron (NM_001195298, intron 1 of 10)	intron (NM_001195298, intron 1 of 10)	1344.0	NM_001195298	100502766.0	Mm.335713	NM_001195298	ENSMUSG00000079553	Kifc1	100042970|Gm4137|HSET|KNSL2|Kifc5a|Knsl2a|Tctex-7|Tctex-7A|Tctex7|Tctex7a	kinesin family member C1	protein-coding	7.0	3.5	4.5	3.0	3.0	1.5
Merged-chr10-116584356-2	chr10	116583856	116584856	+	557.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2845.0	NM_001359249	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110759409-2	chr9	110758911	110759911	+	556.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4270.0	NM_010859	17897.0	Mm.7353	NM_010859	ENSMUSG00000059741	Myl3	MLC1s|MLC1v|Mylc|VLC1	myosin, light polypeptide 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122887457-2	chr8	122886957	122887957	+	556.75	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037865, exon 12 of 14)	non-coding (NR_037865, exon 12 of 14)	39083.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132941087-2	chr4	132940603	132941603	+	556.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18552.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	1.0	0.0	0.0	0.0	0.0	0.5
Merged-chr16-57576268-2	chr16	57575768	57576768	+	556.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_025599, intron 1 of 9)	L1_Mur2|LINE|L1	27026.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136978062-2	chr5	136977546	136978546	+	556.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8858.0	NM_001310747	70103.0	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	1.5	1.0	1.0	1.5	0.0	2.5
Merged-chr3-127184211-2	chr3	127183711	127184711	+	556.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	22906.0	NR_105029	100862268.0	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA	7.0	0.0	4.0	3.0	5.0	0.0
Merged-chr4-99198689-2	chr4	99198172	99199172	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175029, intron 1 of 10)	B1_Mur1|SINE|Alu	4525.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	28.5	40.0	28.5	30.5	33.5	18.0
Merged-chr11-4660596-2	chr11	4660096	4661096	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029291, intron 8 of 19)	intron (NM_029291, intron 8 of 19)	22803.0	NM_029291	75452.0	Mm.439906	NM_029291	ENSMUSG00000020412	Ascc2	1700011I11Rik|2610034L15Rik|AI482016|ASC1p100|AW046480	activating signal cointegrator 1 complex subunit 2	protein-coding	5.0	2.5	8.5	0.0	19.0	10.5
Merged-chr7-27203889-2	chr7	27203389	27204389	+	556.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001243888, exon 7 of 7)	exon (NM_001243888, exon 7 of 7)	-1647.0	NR_035422	100316839.0		NR_035422	ENSMUSG00000080533	Mir1191	Mirn1191|mmu-mir-1191|mmu-mir-1191a	microRNA 1191	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-3833405-2	chr10	3832905	3833905	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159942, intron 2 of 16)	intron (NM_001159942, intron 2 of 16)	-39262.0	NM_001033253	213783.0	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-17772984-2	chr15	17772484	17773484	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	596643.0	NR_045711	70886.0	Mm.399021	NR_045711	ENSMUSG00000098150	4921515E04Rik	-	RIKEN cDNA 4921515E04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86513199-2	chr1	86512699	86513699	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13358.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73377142-2	chr14	73376642	73377642	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008410, intron 1 of 5)	intron (NM_008410, intron 1 of 5)	8147.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-59784675-2	chr12	59784175	59785175	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	-565192.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr6-19688279-2	chr6	19687779	19688779	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	132937.0	NR_105789	102465192.0		NR_105789	ENSMUSG00000099149	Mir6370	Gm27480|mmu-mir-6370	microRNA 6370	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-73244326-2	chr8	73243826	73244826	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010687, intron 1 of 14)	intron (NM_010687, intron 1 of 14)	109214.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0.0	0.0	0.0	3.0	1.0	0.0
Merged-chr11-68566612-2	chr11	68566112	68567112	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10426.0	NM_146004	215723.0	Mm.131205	NM_146004	ENSMUSG00000048329	Mfsd6l	-	major facilitator superfamily domain containing 6-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-90126521-2	chr3	90126021	90127021	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029937, intron 7 of 39)	intron (NM_029937, intron 7 of 39)	22389.0	NM_029937	77595.0	Mm.159949	NM_029937	ENSMUSG00000027939	Nup210l	4930548O11Rik|R26-EGFP|Tg(Gt(ROSA)26Sor-EGFP)130910Eps	nucleoporin 210-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-77450870-2	chr8	77450370	77451370	+	556.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_030113, exon 2 of 23)	exon (NM_030113, exon 2 of 23)	-66186.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32975878-2	chr2	32975378	32976378	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151460, intron 6 of 8)	intron (NR_151460, intron 6 of 8)	6205.0	NR_151461	56017.0	Mm.305754	NM_019488	ENSMUSG00000026791	Slc2a8	D2Ertd44e|GLUT8|GlutX1	solute carrier family 2, (facilitated glucose transporter), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-98813790-2	chr13	98813299	98814299	+	556.5	f0_balb.idr|f0_c57.idr	intron (NM_172591, intron 1 of 25)	L1MB7|LINE|L1	1650.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-39613281-2	chr2	39612781	39613781	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-386932.0	NM_024209	67857.0	Mm.389242	NM_024209	ENSMUSG00000026753	Ppp6c	2310003C10Rik|Pp6C	protein phosphatase 6, catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139189771-2	chr4	139189271	139190271	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3128.0	NM_009798	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	4.0	38.0	12.5	26.5	25.5	14.0
Merged-chr4-152281769-2	chr4	152281269	152282269	+	556.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_178406, exon 4 of 6)	exon (NM_178406, exon 4 of 6)	7407.0	NM_178406	100129.0	Mm.23235	NM_178406	ENSMUSG00000042804	Gpr153	1110065N12Rik|AI449320|PGR1	G protein-coupled receptor 153	protein-coding	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127928807-2	chr7	127928307	127929307	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133351, intron 2 of 5)	intron (NM_133351, intron 2 of 5)	1306.0	NM_133351	76560.0	Mm.5875	NM_133351	ENSMUSG00000030800	Prss8	2410039E18Rik|AI313909|C79772|CAP1|fr|mCAP1	protease, serine 8 (prostasin)	protein-coding	0.0	3.0	0.0	0.0	3.0	1.0
Merged-chr19-44121470-2	chr19	44120970	44121970	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081077, intron 9 of 13)	MIR3|SINE|MIR	13986.0	NM_001356578	72502.0	Mm.276109	NM_001081077	ENSMUSG00000025200	Cwf19l1	-	CWF19-like 1, cell cycle control (S. pombe)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168561238-2	chr2	168560738	168561738	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037177, intron 3 of 6)	B4A|SINE|B4	29127.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95544857-2	chr10	95544357	95545357	+	556.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_080560, exon 4 of 4)	3' UTR (NM_080560, exon 4 of 4)	14464.0	NR_037212	100526463.0		NR_037212	ENSMUSG00000092867	Mir3058	mir-3058|mmu-mir-3058	microRNA 3058	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16415448-2	chr7	16414948	16415948	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198631, intron 1 of 13)	B1_Mur1|SINE|Alu	14252.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-50219170-2	chr8	50218670	50219670	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-148942.0	NR_046067	100039954.0	Mm.400419	NR_046067	ENSMUSG00000110281	Gm2516	-	predicted gene 2516	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138138126-2	chr5	138137626	138138626	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	17618.0	NM_019747	56314.0	Mm.19274	NM_019747	ENSMUSG00000037007	Zfp113	4732456B05Rik|mKIAA4229	zinc finger protein 113	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23747694-2	chr18	23747194	23748194	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4611.0	NR_126066	100502834.0	Mm.213614	NR_126066	ENSMUSG00000086287	Gm15972	-	predicted gene 15972	ncRNA	4.5	0.0	1.0	0.0	0.0	1.5
Merged-chr2-31639471-2	chr2	31638971	31639971	+	556.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001123362)	promoter-TSS (NM_001123362)	-566.0	NM_001123362	381359.0	Mm.379512	NM_001123362	ENSMUSG00000079466	Prdm12	Gm998	PR domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-7766070-2	chr14	7765570	7766570	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51887.0	NM_001081427	286940.0	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71475894-2	chr8	71475394	71476394	+	556.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164679)	TTS (NM_001164679)	6700.0	NR_122114	66498.0	Mm.260360	NM_025600	ENSMUSG00000074247	Dda1	1500034J01Rik|1700095J19Rik|R74921	DET1 and DDB1 associated 1	protein-coding	11.5	25.5	15.0	20.5	22.5	22.5
Merged-chr8-106511172-2	chr8	106510672	106511672	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037809, intron 1 of 15)	intron (NM_001037809, intron 1 of 15)	320.0	NM_001037809	12560.0	Mm.4658	NM_007665	ENSMUSG00000061048	Cdh3	AI385538|Cadp|Cdhp|P-cadherin|Pcad	cadherin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167743671-2	chr2	167743171	167744171	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52494.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-68498807-2	chr11	68498307	68499307	+	556.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177320)	TTS (NM_177320)	-4212.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-8165300-2	chr17	8164800	8165800	+	556.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001197046)	promoter-TSS (NM_001197046)	-218.0	NM_001197046	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46964103-2	chr18	46963603	46964603	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178377, intron 3 of 6)	intron (NM_178377, intron 3 of 6)	5227.0	NM_178377	69456.0	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2|Tg(Vav1-icre)A2Kio|Vav-cre|Vav-iCre|Vav1-Cre|VavCre	COMM domain containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89141016-2	chr15	89140516	89141516	+	556.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013871)	promoter-TSS (NM_013871)	-313.0	NM_013871	29857.0	Mm.38343	NM_013871	ENSMUSG00000022610	Mapk12	AW123708|Erk6|P38gamma|Prkm12|Sapk3	mitogen-activated protein kinase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-97850062-2	chr16	97849562	97850562	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359077, intron 1 of 23)	intron (NM_001359077, intron 1 of 23)	1165.0	NM_144789	114604.0	Mm.328741	NM_144789	ENSMUSG00000014039	Prdm15	C21orf83|E130018M06Rik|ORF62|Zfp298	PR domain containing 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53385873-2	chr4	53385373	53386373	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54540.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80066991-2	chr12	80066491	80067491	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	46022.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-55367166-2	chr2	55366666	55367666	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25B|LTR|ERVK	-68804.0	NM_001304810	16519.0	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-25869872-2	chr17	25869372	25870372	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1134.0	NM_026633	68241.0	Mm.328870	NM_026633	ENSMUSG00000025732	Mcrip2	9530058B02Rik|Fam195a	MAPK regulated corepressor interacting protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160249698-2	chr2	160249198	160250198	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77796.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43422684-2	chr4	43422184	43423184	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037709, intron 4 of 11)	intron (NM_001037709, intron 4 of 11)	6450.0	NM_177377	329831.0	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	2.5	0.0	1.0	5.5	0.0	0.0
Merged-chr10-94526382-2	chr10	94525882	94526882	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172051, intron 1 of 3)	intron (NM_172051, intron 1 of 3)	11525.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114889856-2	chr7	114889356	114890356	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-58794.0	NR_040317	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	0.0	2.0	0.5	1.5	4.0	3.0
Merged-chr1-149949540-2	chr1	149949040	149950040	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	RSINE1|SINE|B4	11750.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147127284-2	chr4	147126784	147127784	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21B|LTR|ERV1	-48582.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152029957-2	chr4	152029457	152030457	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031867, intron 5 of 5)	intron (NM_031867, intron 5 of 5)	-2286.0	NM_133879	100090.0	Mm.24661	NM_133879	ENSMUSG00000028952	Zbtb48	0610011D15Rik|AI327031|Hkr3|TZAP	zinc finger and BTB domain containing 48	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24038517-2	chr17	24038031	24039031	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175440, intron 1 of 5)	intron (NM_175440, intron 1 of 5)	288.0	NM_175440	213171.0	Mm.133083	NM_175440	ENSMUSG00000050762	Prss27	CAPH2|Mpn|marapsin	protease, serine 27	protein-coding	1.0	0.0	1.0	5.0	3.0	15.0
Merged-chr19-9947155-2	chr19	9946655	9947655	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33445.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	3.5	0.0	1.0	0.0	2.5	1.5
Merged-chr18-66463170-2	chr18	66462670	66463670	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021451, intron 2 of 2)	intron (NM_021451, intron 2 of 2)	4566.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-21733003-2	chr13	21732503	21733503	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2031.0	NM_178210	319159.0		NM_178210	ENSMUSG00000067455	Hist1h4j	-	histone cluster 1, H4j	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40540121-2	chr12	40539621	40540621	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	ORR1A2|LTR|ERVL-MaLR	94068.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36166189-2	chr17	36165689	36166689	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081032, intron 3 of 7)	intron (NM_001081032, intron 3 of 7)	2348.0	NM_001081032	667977.0	Mm.441651	NM_001081032	ENSMUSG00000073402	Gm8909	EG667977|H2-Tw5l|H2-gs17	predicted gene 8909	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-83627989-2	chr2	83627489	83628489	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-16589.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-102780094-2	chr9	102779594	102780594	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40446.0	NR_033301	434510.0	Mm.387937	NM_001034892	ENSMUSG00000093812	Gm5627	EG434510	predicted gene 5627	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124283762-2	chr6	124283262	124284262	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F|LINE|L1	-20889.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-101609510-2	chr3	101609010	101610010	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4803.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.0	0.0	0.0	2.5	0.0	0.0
Merged-chr9-70011933-2	chr9	70011433	70012433	+	556.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039519)	promoter-TSS (NM_001039519)	-615.0	NM_001282084	235459.0	Mm.293117	NM_199151	ENSMUSG00000033543	Gtf2a2	TFIIA-gamma|TfIIg|Tfiia2	general transcription factor II A, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-49830885-2	chr18	49830385	49831385	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-2112.0	NM_001081371	240283.0	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-137424502-2	chr7	137424002	137425002	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13071.0	NM_001348093	30926.0	Mm.267692	NM_023140	ENSMUSG00000031068	Glrx3	PICOT|Txnl2	glutaredoxin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167985320-2	chr2	167984820	167985820	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080708, intron 15 of 21)	intron (NM_001080708, intron 15 of 21)	25273.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8290087-2	chr4	8289587	8290587	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51046.0	NM_007592	12319.0	Mm.119320	NM_007592	ENSMUSG00000041261	Car8	AW546993|Ca8|Cals|Cals1|Carp|wdl	carbonic anhydrase 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80999664-2	chr17	80999164	81000164	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026516, intron 3 of 3)	intron (NM_026516, intron 3 of 3)	55032.0	NM_026516	68027.0	Mm.357108	NM_026516	ENSMUSG00000024245	Tmem178	2810417M05Rik|Tmem178a	transmembrane protein 178	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21374263-2	chr19	21373763	21374763	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98398.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	0.0	1.5	4.5	0.0	1.5	4.5
Merged-chr5-114308538-2	chr5	114308038	114309038	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCTCCC)n|Simple_repeat|Simple_repeat	-6403.0	NM_001164573	231646.0	Mm.238285	NM_146163	ENSMUSG00000066952	Myo1h	4631401O15Rik	myosin 1H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87819428-1	chr6	87818928	87819928	+	556.5	f1_balb.idr	intron (NM_133934, intron 10 of 10)	intron (NM_133934, intron 10 of 10)	-7264.0	NR_104478	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	0.0	0.0	1.0	0.0	0.5	2.5
Merged-chr13-113499111-2	chr13	113498611	113499611	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 1 of 6)	intron (NR_045501, intron 1 of 6)	3733.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-47318990-2	chr6	47318490	47319490	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74594.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123045956-2	chr8	123045456	123046456	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3381.0	NR_045268	100503178.0	Mm.294938	NR_045268	ENSMUSG00000099881	2810013P06Rik	-	RIKEN cDNA 2810013P06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-72634330-2	chr16	72633830	72634830	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-28819.0	NM_019413	19876.0	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.0	0.0	2.0	0.0	0.5	2.0
Merged-chr2-75636960-3	chr2	75636425	75637425	+	556.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22334.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	0.0	5.5	0.0	0.0	0.0	2.5
Merged-chr5-61846074-2	chr5	61845574	61846574	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37231.0	NM_019468	14380.0	Mm.347430	NM_019468	ENSMUSG00000089992	G6pd2	G6pdx-ps1|Gpd-2|Gpd2	glucose-6-phosphate dehydrogenase 2	protein-coding	12.5	3.5	3.5	4.5	8.5	0.5
Merged-chr4-117543682-2	chr4	117543182	117544182	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6642.0	NM_001356404	140546.0	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108707531-2	chr6	108707031	108708031	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	-46597.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	1.0	5.0	3.0	1.0	5.0	3.0
Merged-chr7-60012982-2	chr7	60012482	60013482	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001349693, intron 2 of 12)	RLTR14-int|LTR|ERV1	-7783.0	NM_033174	84704.0	Mm.274995	NM_033174	ENSMUSG00000102627	Snurf	2410045I01Rik	SNRPN upstream reading frame	protein-coding	2.5	3.5	3.5	4.0	1.5	1.5
Merged-chr1-82799481-2	chr1	82798981	82799981	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31025.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117008437-2	chr2	117007937	117008937	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Kanga2_a|DNA|TcMar-Tc2	108285.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-75219403-1	chr3	75218903	75219903	+	556.0	f0_c57.idr	Intergenic	Intergenic	50675.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-166115963-1	chr1	166115463	166116463	+	556.0	f0_balb.idr	intron (NM_001033344, intron 2 of 5)	L2b|LINE|L2	11935.0	NM_001033344	240892.0	Mm.35315	NM_001033344	ENSMUSG00000026564	Dusp27	C130085G02Rik|Gm209	dual specificity phosphatase 27 (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98803046-2	chr7	98802546	98803546	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-32066.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.0	1.5	0.0	5.0	0.0	1.5
Merged-chr7-99088495-2	chr7	99087995	99088995	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 4 of 14)	intron (NM_178635, intron 4 of 14)	52649.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	7.5	55.0	20.0	20.0	44.0	27.5
Merged-chr6-133363538-1	chr6	133363038	133364038	+	556.0	f1_balb.idr	Intergenic	RMER17B|LTR|ERVK	71322.0	NM_027784	232426.0	Mm.158689	NM_027784	ENSMUSG00000055594	5530400C23Rik	GRP	RIKEN cDNA 5530400C23 gene	protein-coding	1.0	3.0	3.5	0.0	4.0	0.0
Merged-chr10-120188139-2	chr10	120187639	120188639	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359184, intron 1 of 11)	intron (NM_001359184, intron 1 of 11)	13458.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139288963-1	chr5	139288463	139289463	+	556.0	f1_balb.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	35466.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-20059145-1	chr11	20058645	20059645	+	556.0	f1_c57bl6.idr	Intergenic	ORR1C2-int|LTR|ERVL-MaLR	53806.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	0.0	0.5	8.0	0.0	4.5	2.5
Merged-chr10-6462371-1	chr10	6461871	6462871	+	556.0	f0_balb.idr	Intergenic	L1MCa|LINE|L1	-296222.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr17-34191888-1	chr17	34191388	34192388	+	556.0	f1_balb.idr	intron (NM_001161730, intron 5 of 11)	MIRb|SINE|MIR	4332.0	NM_013683	21354.0	Mm.482076	NM_013683	ENSMUSG00000037321	Tap1	ABC17|APT1|Abcb2|Ham-1|Ham1|MTP1|PSF1|RING4|TAP|Tap-1|Y3	transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	0.0	3.5	0.0	4.5	8.0	1.0
Merged-chr8-108766228-2	chr8	108765756	108766756	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	51612.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54681167-2	chr13	54680667	54681667	+	556.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027395, exon 11 of 11)	non-coding (NR_027395, exon 11 of 11)	6641.0	NM_001146025	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25787099-2	chr14	25786599	25787599	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18243.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-101590578-2	chr14	101590078	101591078	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	18613.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-101656507-2	chr14	101656007	101657007	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016723, intron 2 of 8)	(CAGA)n|Simple_repeat|Simple_repeat	2540.0	NM_016723	50933.0	Mm.275970	NM_016723	ENSMUSG00000022111	Uchl3	-	ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-80644677-2	chr18	80644177	80645177	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 8 of 9)	intron (NM_198429, intron 8 of 9)	63496.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31116607-2	chr17	31116107	31117107	+	556.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009593, exon 15 of 15)	3' UTR (NM_009593, exon 15 of 15)	13004.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	4.5	3.0	3.5	0.0	0.0	0.0
Merged-chr9-11094056-2	chr9	11093556	11094556	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-189281.0	NM_001170787	244682.0	Mm.187021	NM_001033359	ENSMUSG00000039488	Cntn5	6720426O10Rik|A830025P08Rik|Gm507|NB-2	contactin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-54314256-2	chr3	54313756	54314756	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253682, intron 8 of 11)	intron (NM_001253682, intron 8 of 11)	-46851.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	2.5	0.0	0.0	2.5	0.0	0.5
Merged-chr19-25050950-1	chr19	25050450	25051450	+	556.0	f0_balb.idr	intron (NM_028785, intron 1 of 47)	intron (NM_028785, intron 1 of 47)	51421.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	6.0	21.5	25.0	2.5	20.0	11.5
Merged-chr2-32979154-2	chr2	32978654	32979654	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151461, intron 1 of 5)	intron (NR_151461, intron 1 of 5)	2929.0	NR_151461	56017.0	Mm.305754	NM_019488	ENSMUSG00000026791	Slc2a8	D2Ertd44e|GLUT8|GlutX1	solute carrier family 2, (facilitated glucose transporter), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71374548-1	chr8	71374048	71375048	+	556.0	f1_c57bl6.idr	TTS (NM_029865)	TTS (NM_029865)	3250.0	NM_001293800	77090.0	Mm.440170	NM_029865	ENSMUSG00000002396	Ocel1	9430098E02Rik|AI326022|AI593544	occludin/ELL domain containing 1	protein-coding	0.0	10.0	0.0	5.0	2.5	1.5
Merged-chr9-47589340-1	chr9	47588840	47589840	+	556.0	f1_balb.idr	intron (NM_001025600, intron 1 of 8)	MTD|LTR|ERVL-MaLR	58988.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	20.5	22.5	13.5	28.5	56.0	78.5
Merged-chr1-151960325-2	chr1	151959825	151960825	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 3 of 5)	intron (NM_197990, intron 3 of 5)	129995.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-6723388-2	chr9	6722888	6723888	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-453202.0	NM_001357484	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128917953-1	chr10	128917453	128918453	+	556.0	f1_balb.idr	exon (NM_134006, exon 3 of 5)	exon (NM_134006, exon 3 of 5)	1344.0	NM_001358527	19682.0	Mm.439856	NM_134006	ENSMUSG00000025350	Rdh5	9-cis|AI987873|RDH4|cRDH	retinol dehydrogenase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-49195753-1	chr13	49195253	49196253	+	556.0	f0_balb.idr	3' UTR (NM_013610, exon 4 of 4)	3' UTR (NM_013610, exon 4 of 4)	8206.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-173388414-1	chr2	173387914	173388914	+	556.0	f0_balb.idr	Intergenic	Intergenic	-111881.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-51219722-1	chr14	51219222	51220222	+	556.0	f1_c57bl6.idr	Intergenic	B3|SINE|B2	16027.0	NM_017389	503847.0	Mm.377124	NM_017389	ENSMUSG00000050766	Ear14	-	eosinophil-associated, ribonuclease A family, member 14	protein-coding	1.0	3.0	0.0	2.0	2.0	2.0
Merged-chr8-70531411-2	chr8	70530911	70531911	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010223, intron 4 of 8)	MIRc|SINE|MIR	3565.0	NM_001199631	14232.0	Mm.141864	NM_010223	ENSMUSG00000019428	Fkbp8	38kDa|FKBP-38|FKBP-8|FKBPR38|Fkbp38|mFKBP38	FK506 binding protein 8	protein-coding	0.0	2.5	1.0	1.5	3.0	3.0
Merged-chr6-135054232-1	chr6	135053732	135054732	+	556.0	f1_balb.idr	Intergenic	Intergenic	-11430.0	NM_181444	232431.0	Mm.23575	NM_181444	ENSMUSG00000046733	Gprc5a	Rai3|Raig1	G protein-coupled receptor, family C, group 5, member A	protein-coding	0.0	0.0	0.5	0.0	2.0	0.5
Merged-chr17-86535413-2	chr17	86534913	86535913	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 10 of 14)	intron (NM_011104, intron 10 of 14)	-218451.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-81750861-2	chr12	81750361	81751361	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001174107, intron 2 of 10)	ORR1E|LTR|ERVL-MaLR	30309.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80573429-2	chr10	80572929	80573929	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_078477, intron 1 of 1)	intron (NM_078477, intron 1 of 1)	3867.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95680999-1	chr13	95680499	95681499	+	556.0	f1_balb.idr	intron (NM_027711, intron 17 of 35)	intron (NM_027711, intron 17 of 35)	-15921.0	NM_010170	14064.0	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	11.0	6.5	5.0	8.5	4.5	15.0
Merged-chr10-75922323-2	chr10	75921823	75922823	+	556.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161853)	promoter-TSS (NM_001161853)	-709.0	NM_001161853	20587.0	Mm.279751	NM_011418	ENSMUSG00000000902	Smarcb1	AU020204|Baf47|Ini1|SNF5/INI1|Snf5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-96128893-1	chr16	96128393	96129393	+	556.0	f1_c57bl6.idr	Intergenic	RLTR14_RN|LTR|ERV1	-1168.0	NM_008251	15312.0	Mm.2756	NM_008251	ENSMUSG00000040681	Hmgn1	HMG-14|Hmg14	high mobility group nucleosomal binding domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-75838932-1	chr13	75838432	75839432	+	556.0	f1_balb.idr	promoter-TSS (NM_001360151)	promoter-TSS (NM_001360151)	-953.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	5.0	18.0	5.0	6.5	10.0	8.5
Merged-chr4-55527869-1	chr4	55527369	55528369	+	556.0	f1_balb.idr	3' UTR (NM_010637, exon 5 of 5)	3' UTR (NM_010637, exon 5 of 5)	4606.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	5.0	0.5	0.0	8.0	0.0	2.0
Merged-chr16-17467923-1	chr16	17467423	17468423	+	556.0	f1_c57bl6.idr	intron (NM_001277231, intron 1 of 1)	intron (NM_001277231, intron 1 of 1)	15938.0	NM_007764	12929.0	Mm.21048	NM_007764	ENSMUSG00000006134	Crkl	1110025F07Rik|AA589403|AI325100|Crkol	v-crk avian sarcoma virus CT10 oncogene homolog-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82040203-2	chr11	82039703	82040703	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B3|LTR|ERVL	4626.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-75006222-2	chr17	75005722	75006722	+	556.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_019919, exon 1 of 34)	exon (NM_019919, exon 1 of 34)	693.0	NM_019919	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142494570-2	chr3	142494070	142495070	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-2364.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117957208-2	chr11	117956708	117957708	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12158.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-28030970-2	chr3	28030470	28031470	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 5 of 25)	MTE2b|LTR|ERVL-MaLR	46799.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24389222-1	chr5	24388722	24389722	+	556.0	f0_balb.idr	intron (NM_001002897, intron 5 of 13)	intron (NM_001002897, intron 5 of 13)	2921.0	NM_001002897	213948.0	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-19308580-2	chr2	19308080	19309080	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081083, intron 19 of 19)	intron (NM_001081083, intron 19 of 19)	-35737.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-63934669-2	chr7	63934169	63935169	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	4246.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	2.0	15.5	4.5	3.0	0.0	3.0
Merged-chr19-23863320-2	chr19	23862820	23863820	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177034, intron 1 of 12)	intron (NM_177034, intron 1 of 12)	104444.0	NM_177034	319924.0	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	0.0	0.5	1.5	1.5	0.0	0.0
Merged-chr7-19791475-2	chr7	19790975	19791975	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161844, intron 4 of 10)	ID_B1|SINE|B4	5334.0	NM_001161844	80794.0	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106475481-1	chr11	106474981	106475981	+	556.0	f0_balb.idr	intron (NM_023913, intron 1 of 21)	intron (NM_023913, intron 1 of 21)	12315.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4193808-1	chr11	4193308	4194308	+	556.0	f1_balb.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	6975.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-121065674-2	chr4	121065174	121066174	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172700, intron 9 of 9)	intron (NM_172700, intron 9 of 9)	26108.0	NM_007741	12840.0	Mm.269384	NM_007741	ENSMUSG00000028626	Col9a2	AI427499|Col9a-2	collagen, type IX, alpha 2	protein-coding	5.5	3.5	0.0	2.0	0.0	3.0
Merged-chr10-81129904-1	chr10	81129404	81130404	+	556.0	f0_balb.idr	Intergenic	Intergenic	-6367.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-14506291-2	chr19	14505791	14506791	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302951, intron 8 of 19)	PB1D11|SINE|Alu	-67785.0	NR_003027	19862.0		NR_003027	ENSMUSG00000095132	Rnu6	-	U6 small nuclear RNA	snRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-130860104-2	chr4	130859604	130860604	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53230.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65202631-1	chr9	65202131	65203131	+	556.0	f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-12059.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25014197-2	chr8	25013686	25014686	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270996, intron 1 of 21)	intron (NM_001270996, intron 1 of 21)	2736.0	NM_001270996	11502.0	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	25.5	17.5	19.0	20.0	34.0	20.5
Merged-chr13-63573576-1	chr13	63573076	63574076	+	556.0	f0_balb.idr	promoter-TSS (NM_001328514)	promoter-TSS (NM_001328514)	-116.0	NM_001328514	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86504566-1	chr17	86504066	86505066	+	556.0	f1_c57bl6.idr	intron (NM_011104, intron 10 of 14)	ORR1F|LTR|ERVL-MaLR	-217388.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	0.0	0.0	2.0	6.0	0.0	0.0
Merged-chr6-4808304-1	chr6	4807804	4808804	+	556.0	f0_balb.idr	Intergenic	Intergenic	60998.0	NM_130877	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	0.0	0.0	2.5	0.0	0.5	1.0
Merged-chr7-96549117-1	chr7	96548617	96549617	+	556.0	f1_c57bl6.idr	intron (NM_001310762, intron 4 of 32)	intron (NM_001310762, intron 4 of 32)	-207153.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	0.0	0.0	0.5	1.5	0.0	0.0
Merged-chr5-114630606-2	chr5	114630106	114631106	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022017, intron 8 of 15)	intron (NM_022017, intron 8 of 15)	27815.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-131022417-1	chr6	131021917	131022917	+	556.0	f0_balb.idr	Intergenic	Intergenic	224945.0	NM_001170851	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	12.0	0.0	0.0	2.5	0.0	0.0
Merged-chr17-11610131-2	chr17	11609631	11610631	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016694, intron 6 of 11)	intron (NM_016694, intron 6 of 11)	273058.0	NR_045808	52027.0	Mm.442257	NR_045808		D17Ertd648e	-	DNA segment, Chr 17, ERATO Doi 648, expressed	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-122185371-2	chr9	122184871	122185871	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271873, intron 12 of 12)	MLT1L|LTR|ERVL-MaLR	67912.0	NM_001357776	20623.0	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125330760-2	chr6	125330260	125331260	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011324, intron 1 of 11)	intron (NM_011324, intron 1 of 11)	9420.0	NM_011324	20276.0	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	18.0	47.5	23.0	33.0	31.5	42.0
Merged-chr7-80856973-2	chr7	80856473	80857473	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5135.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	0.0	0.0	0.5	2.0	0.0	0.0
Merged-chr6-38913919-1	chr6	38913419	38914419	+	556.0	f1_c57bl6.idr	Intergenic	Intergenic	-5067.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-14160437-1	chr12	14159937	14160937	+	556.0	f1_c57bl6.idr	Intergenic	Intergenic	-8399.0	NM_029007	105005.0	Mm.227253	NM_029007	ENSMUSG00000020607	Fam84a	2310003N02Rik|4731402F03Rik|AW125753|Nse1	family with sequence similarity 84, member A	protein-coding	1.5	0.0	4.0	1.0	0.0	3.0
Merged-chr19-28986323-1	chr19	28985823	28986823	+	556.0	f0_balb.idr	Intergenic	MurERV4_19-int|LTR|ERVK	-4029.0	NM_001302382	67072.0	Mm.78875	NM_025950	ENSMUSG00000024780	Cdc37l1	2700033A15Rik|BB159850|Cdc37l|Harc	cell division cycle 37-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25959523-1	chr15	25959023	25960023	+	556.0	f0_balb.idr	intron (NM_001277317, intron 1 of 6)	intron (NM_001277317, intron 1 of 6)	11296.0	NR_106071	102465698.0		NR_106071	ENSMUSG00000098719	Mir7212	Gm28027|mmu-mir-7212	microRNA 7212	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145283595-1	chr4	145283095	145284095	+	556.0	f0_balb.idr	intron (NM_009401, intron 10 of 12)	intron (NM_009401, intron 10 of 12)	31552.0	NM_009401	21941.0	Mm.12810	NM_009401	ENSMUSG00000028602	Tnfrsf8	Cd30|D1S166E|Ki|Ki-1	tumor necrosis factor receptor superfamily, member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-92263641-1	chr4	92263141	92264141	+	556.0	f1_balb.idr	Intergenic	Lx3C|LINE|L1	-116420.0	NM_027034	69314.0	Mm.55891	NM_027034	ENSMUSG00000028533	Izumo3	1700011H22Rik	IZUMO family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111157088-1	chr12	111156588	111157588	+	556.0	f1_balb.idr	Intergenic	Lx7|LINE|L1	-9282.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106135983-2	chr8	106135483	106136483	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040345, intron 1 of 3)	CpG	583.0	NR_040346	69771.0	Mm.393274	NR_040344		1810019D21Rik	-	RIKEN cDNA 1810019D21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-29857595-1	chr13	29857095	29858095	+	556.0	f0_balb.idr	Intergenic	Intergenic	-1922.0	NM_144536	68916.0	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105711440-2	chr8	105710940	105711940	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3151.0	NM_027655	71046.0	Mm.280888	NM_027655	ENSMUSG00000013158	4933405L10Rik	-	RIKEN cDNA 4933405L10 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-28722186-2	chr15	28721686	28722686	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	518420.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10449097-1	chr19	10448597	10449597	+	556.0	f1_c57bl6.idr	3' UTR (NM_173068, exon 11 of 11)	3' UTR (NM_173068, exon 11 of 11)	8350.0	NM_001111140	278795.0	Mm.490638	NM_001111140	ENSMUSG00000090291	Lrrc10b	Gm705|SerdinR	leucine rich repeat containing 10B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr17-33993126-1	chr17	33992626	33993626	+	556.0	f1_balb.idr	Intergenic	RMER19B2|LTR|ERVK	7207.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	14.0	0.0	3.5	6.5	3.5	0.5
Merged-chr13-45694384-2	chr13	45693884	45694884	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 5 of 6)	RSINE1|SINE|B4	186940.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87468522-2	chr1	87468022	87469022	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-1679.0	NM_028473	73234.0	Mm.7310	NM_028473	ENSMUSG00000026258	3110079O15Rik	Snorc	RIKEN cDNA 3110079O15 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5764061-1	chr19	5763561	5764561	+	556.0	f1_c57bl6.idr	intron (NR_155264, intron 8 of 15)	intron (NR_155264, intron 8 of 15)	7358.0	NM_023912	78891.0	Mm.276063	NM_023912	ENSMUSG00000024941	Scyl1	2810011O19Rik|C85140|Ntkl|mdf|mfd|p105	SCY1-like 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97126348-1	chr11	97125848	97126848	+	556.0	f1_balb.idr	Intergenic	Intergenic	-11017.0	NM_019507	57765.0	Mm.94519	NM_019507	ENSMUSG00000001444	Tbx21	TBT1|Tbet|Tblym	T-box 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107521886-1	chr9	107521386	107522386	+	556.0	f0_balb.idr	intron (NM_001174047, intron 23 of 38)	intron (NM_001174047, intron 23 of 38)	-12059.0	NM_019704	56395.0	Mm.260153	NM_019704	ENSMUSG00000010045	Tmem115	C78915|Pl6|Pp6	transmembrane protein 115	protein-coding	0.0	0.0	0.0	6.0	2.0	2.0
Merged-chr13-74649321-1	chr13	74648821	74649821	+	556.0	f1_c57bl6.idr	intron (NM_030711, intron 2 of 18)	Lx4A|LINE|L1	9468.0	NM_030711	80898.0	Mm.83526	NM_030711	ENSMUSG00000021583	Erap1	A-LAP|ARTS-1|Arts1|ERAAP|PILSA|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132347161-2	chr1	132346661	132347661	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	20787.0	NM_001311108	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-148893674-1	chr1	148893174	148894174	+	556.0	f0_balb.idr	Intergenic	L1MCa|LINE|L1	1028765.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134454428-2	chr1	134453928	134454928	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16B|LTR|ERVL	-1103.0	NM_153128	240756.0	Mm.87398	NM_153128	ENSMUSG00000026455	Klhl12	C3ip1	kelch-like 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136124450-2	chr5	136123950	136124950	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027891, intron 11 of 14)	RMER21B|LTR|ERV1	7759.0	NM_011293	20022.0	Mm.4896	NM_011293	ENSMUSG00000039771	Polr2j	14.5kDa|Polr2i|Rpb11a|Rpo2-4	polymerase (RNA) II (DNA directed) polypeptide J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-144303640-2	chr1	144303140	144304140	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	-54536.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-169536765-2	chr2	169536265	169537265	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96881.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-100553672-2	chr6	100553172	100554172	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26272.0	NR_040525	73395.0	Mm.69413	NR_040525	ENSMUSG00000101553	1700049E22Rik	-	RIKEN cDNA 1700049E22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-74524379-1	chr17	74523879	74524879	+	556.0	f1_c57bl6.idr	Intergenic	L1MC|LINE|L1	-3916.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-17252280-1	chr19	17251780	17252780	+	556.0	f0_c57.idr	Intergenic	Intergenic	87225.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	122.5	235.5	175.0	38.5	51.0	53.5
Merged-chr4-133307611-2	chr4	133307101	133308101	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199306, intron 6 of 15)	intron (NM_199306, intron 6 of 15)	-29811.0	NR_110978	52174.0	Mm.244748	NM_025667	ENSMUSG00000028857	Tmem222	5730406H10Rik|AA409341|D4Ertd196e	transmembrane protein 222	protein-coding	4.0	7.0	4.5	5.5	1.0	1.5
Merged-chr15-84950121-2	chr15	84949621	84950621	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033273, intron 8 of 9)	intron (NM_001033273, intron 8 of 9)	1502.0	NR_037206	100526461.0		NR_037206	ENSMUSG00000080441	Mir1249	mir-1249|mmu-mir-1249	microRNA 1249	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103281551-1	chr15	103281051	103282051	+	556.0	f0_balb.idr	intron (NM_019817, intron 1 of 8)	intron (NM_019817, intron 1 of 8)	-3574.0	NR_029766	724064.0		NR_029766	ENSMUSG00000065560	Mir148b	Mirn148b|mir-148b	microRNA 148b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121513589-2	chr8	121513111	121514111	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28343.0	NM_001357260	76405.0	Mm.165697	NM_029597	ENSMUSG00000031809	1700018B08Rik	1700084O22Rik	RIKEN cDNA 1700018B08 gene	protein-coding	0.0	1.5	0.0	0.5	0.0	0.0
Merged-chr9-45944895-1	chr9	45944395	45945395	+	556.0	f0_balb.idr	intron (NM_001359653, intron 16 of 26)	intron (NM_001359653, intron 16 of 26)	-5305.0	NR_106055	102465659.0		NR_106055	ENSMUSG00000098327	Mir7087	Gm27273|mmu-mir-7087	microRNA 7087	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17724228-2	chr16	17723728	17724728	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1281.0	NM_001040683	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-168159978-2	chr2	168159478	168160478	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-5465.0	NR_040327	77017.0	Mm.407822	NR_040327	ENSMUSG00000087648	E130018N17Rik	-	RIKEN cDNA E130018N17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34327117-1	chr18	34326617	34327617	+	556.0	f1_balb.idr	Intergenic	Intergenic	-4028.0	NM_025527	66384.0	Mm.29452	NM_025527	ENSMUSG00000014504	Srp19	2310020D23Rik	signal recognition particle 19	protein-coding	1.5	8.5	2.5	8.5	3.0	2.0
Merged-chr5-35718281-2	chr5	35717793	35718793	+	556.0	f0_balb.idr|f1_balb.idr	exon (NM_194344, exon 5 of 18)	exon (NM_194344, exon 5 of 18)	10983.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80712784-2	chr10	80712284	80713284	+	556.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007460, exon 21 of 31)	exon (NM_007460, exon 21 of 31)	10091.0	NM_027829	71564.0	Mm.35802	NM_027829	ENSMUSG00000055862	Izumo4	9030607L17Rik|AI550407	IZUMO family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84664877-2	chr18	84664377	84665377	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14782.0	NM_177450	338403.0	Mm.23278	NM_177450	ENSMUSG00000056162	Cndp1	AI746433|Cn1	carnosine dipeptidase 1 (metallopeptidase M20 family)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-84283250-2	chr1	84282750	84283750	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003948, intron 1 of 2)	intron (NM_001003948, intron 1 of 2)	1395.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46487979-2	chr19	46487479	46488479	+	556.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_015752, exon 12 of 12)	3' UTR (NM_015752, exon 12 of 12)	-13669.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-108128740-2	chr11	108128240	108129240	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 3 of 16)	intron (NM_011101, intron 3 of 16)	131892.0	NR_106082	102465705.0		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	1.5	4.0	0.0	0.0	3.5	2.0
Merged-chr2-30615558-2	chr2	30615058	30616058	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20514.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-70808930-1	chr6	70808430	70809430	+	556.0	f1_balb.idr	Intergenic	RMER30|DNA|hAT-Charlie	-16755.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25245763-2	chr7	25245263	25246263	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010155, intron 2 of 3)	intron (NM_010155, intron 2 of 3)	4995.0	NM_010155	13875.0	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94672750-2	chr8	94672250	94673250	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024269, intron 5 of 5)	B3|SINE|B2	5659.0	NM_024269	107566.0	Mm.393247	NM_024191	ENSMUSG00000031776	Arl2bp	1700010P10Rik|1700027H16Rik|6330544B05Rik|AI482273|AI849834|BART|Bart1	ADP-ribosylation factor-like 2 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151722092-2	chr1	151721592	151722592	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32635.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-48645566-1	chr9	48645066	48646066	+	556.0	f1_balb.idr	Intergenic	Intergenic	-40443.0	NM_001311062	18113.0	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	0.0	0.0	4.0	0.5	9.5	2.5
Merged-chr17-24738475-1	chr17	24737975	24738975	+	556.0	f1_balb.idr	intron (NM_013759, intron 1 of 4)	B1_Mus1|SINE|Alu	1882.0	NM_001346668	27361.0	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	20.5	64.0	34.0	9.5	40.0	27.0
Merged-chr12-35607909-1	chr12	35607409	35608409	+	556.0	f0_balb.idr	Intergenic	Intergenic	-72920.0	NM_001314027	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	0.0	1.0	0.5	0.0	1.0	0.5
Merged-chr4-147887531-2	chr4	147887031	147888031	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355590, intron 6 of 18)	intron (NM_001355590, intron 6 of 18)	17130.0	NM_001355590	170731.0	Mm.154312	NM_133201	ENSMUSG00000029020	Mfn2	D630023P19Rik|Fzo	mitofusin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31687479-2	chr15	31686979	31687979	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44A|LTR|ERVK	85363.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-13966686-1	chr14	13966186	13967186	+	556.0	f0_balb.idr	Intergenic	Intergenic	-4834.0	NM_001359901	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-59365019-2	chr5	59364519	59365519	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	620983.0	NR_040683	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	0.0	1.0	0.0	0.5	0.0	1.0
Merged-chr14-62052738-2	chr14	62052238	62053238	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	240241.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88288464-2	chr1	88287964	88288964	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10885.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-84062755-2	chr17	84062255	84063255	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	-15905.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80223507-1	chr7	80223007	80224007	+	556.0	f1_c57bl6.idr	intron (NM_001360135, intron 12 of 13)	intron (NM_001360135, intron 12 of 13)	9298.0	NM_001291276	23991.0	Mm.30217	NM_011870	ENSMUSG00000030538	Cib1	Cibkip|Kip|Prkdcip	calcium and integrin binding 1 (calmyrin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-125214753-2	chr2	125214268	125215268	+	556.0	f0_balb.idr|f1_balb.idr	intron (NM_001079690, intron 22 of 27)	intron (NM_001079690, intron 22 of 27)	-32480.0	NM_001159646	110074.0	Mm.282499	NM_023595	ENSMUSG00000027203	Dut	5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase	deoxyuridine triphosphatase	protein-coding	0.0	0.0	1.5	6.5	0.5	3.0
Merged-chr2-102832853-1	chr2	102832353	102833353	+	556.0	f1_c57bl6.idr	intron (NM_001177787, intron 5 of 10)	intron (NM_001177787, intron 5 of 10)	68812.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	8.0	8.0	9.0	1.0	3.0	9.5
Merged-chr2-52419503-1	chr2	52419003	52420003	+	556.0	f0_balb.idr	intron (NM_182994, intron 1 of 5)	intron (NM_182994, intron 1 of 5)	5371.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75543327-2	chr11	75542827	75543827	+	556.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_173388, exon 3 of 14)	exon (NM_173388, exon 3 of 14)	-8102.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr6-125406372-1	chr6	125405872	125406872	+	556.0	f1_balb.idr	Intergenic	Intergenic	-25868.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0.0	0.0	3.5	0.0	0.0	1.5
Merged-chr13-73436240-2	chr13	73435740	73436740	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31143.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-23482151-1	chr1	23481651	23482651	+	556.0	f0_balb.idr	Intergenic	Lx9|LINE|L1	-92436.0	NR_151529	105243890.0	Mm.383635	NR_151529		Gm28822	-	predicted gene 28822	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47731498-1	chr9	47730998	47731998	+	556.0	f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	B3A|SINE|B2	86710.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	5.5	16.5	10.0	1.0	2.0	2.0
Merged-chr4-128659295-2	chr4	128658795	128659795	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	4593.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156448276-1	chr1	156447776	156448776	+	556.0	f1_balb.idr	intron (NM_009230, intron 3 of 15)	intron (NM_009230, intron 3 of 15)	26052.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	9.0	17.5	10.5	19.0	33.0	18.5
Merged-chr12-13250941-2	chr12	13250431	13251431	+	556.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-1757.0	NM_134040	104721.0	Mm.251255	NM_134040	ENSMUSG00000037149	Ddx1	AA409185|DBP-RB	DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	protein-coding	0.0	6.0	3.5	0.0	1.0	0.0
Merged-chr13-119724588-1	chr13	119724088	119725088	+	556.0	f0_balb.idr	intron (NM_175538, intron 2 of 3)	intron (NM_175538, intron 2 of 3)	31294.0	NM_175538	245269.0	Mm.403943	NM_175538	ENSMUSG00000095930	Nim1k	E130304F04Rik|Nim1	NIM1 serine/threonine protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42176310-1	chr10	42175810	42176810	+	556.0	f0_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	100432.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-114393449-2	chr14	114392949	114393949	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F|LINE|L1	-438516.0	NR_045661	75822.0	Mm.410813	NR_045661	ENSMUSG00000115320	4930524C18Rik	-	RIKEN cDNA 4930524C18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77626117-1	chr10	77625617	77626617	+	556.0	f1_c57bl6.idr	intron (NM_019803, intron 1 of 5)	intron (NM_019803, intron 1 of 5)	3796.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170896690-2	chr1	170896190	170897190	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11150.0	NM_023173	80915.0	Mm.34365	NM_023173	ENSMUSG00000026659	Dusp12	1190004O14Rik|AA027408|AW049275|ESTM36|LMW-DSP4|T-DSP4|VH1|mVH1	dual specificity phosphatase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6569276-2	chr2	6568776	6569776	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 11 of 15)	intron (NM_001110232, intron 11 of 15)	152386.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101204709-1	chr15	101204209	101205209	+	556.0	f1_c57bl6.idr	intron (NM_007395, intron 7 of 8)	intron (NM_007395, intron 7 of 8)	10840.0	NR_105927	102466774.0		NR_105927	ENSMUSG00000106563	Mir6962	mmu-mir-6962	microRNA 6962	ncRNA	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr7-71867305-1	chr7	71866805	71867805	+	556.0	f0_balb.idr	Intergenic	Intergenic	-42390.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	3.0	0.0	0.5	0.0	5.0	1.5
Merged-chr12-70713250-1	chr12	70712750	70713750	+	556.0	f1_balb.idr	Intergenic	Intergenic	-112264.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180249750-2	chr1	180249250	180250250	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128605, intron 1 of 10)	B1_Mur1|SINE|Alu	-3800.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-14240091-2	chr4	14239591	14240591	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_131155, intron 2 of 2)	intron (NR_131155, intron 2 of 2)	51218.0	NR_131155	100040030.0	Mm.366499	NR_131155		Gm2560	-	predicted gene 2560	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-12679417-2	chr13	12678917	12679917	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29022.0	NR_003568	664862.0	Mm.415635	NR_003568		Gpr137b-ps	2310041G17Rik	G protein-coupled receptor 137B, pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-91210625-3	chr10	91210174	91211174	+	556.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151510, intron 3 of 3)	intron (NR_151510, intron 3 of 3)	9945.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-8416238-2	chr6	8415738	8416738	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302353, intron 4 of 4)	intron (NM_001302353, intron 4 of 4)	92923.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70656739-1	chr8	70656239	70657239	+	556.0	f1_c57bl6.idr	intron (NM_023217, intron 2 of 4)	intron (NM_023217, intron 2 of 4)	2999.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	4.5	4.5	2.5	5.0	2.0	3.0
Merged-chr1-93819331-1	chr1	93818831	93819831	+	556.0	f1_c57bl6.idr	3' UTR (NM_025454, exon 8 of 8)	3' UTR (NM_025454, exon 8 of 8)	-5909.0	NM_178882	98314.0	Mm.383401	NM_178882	ENSMUSG00000073609	D2hgdh	AA408776|AA408778|AI325464	D-2-hydroxyglutarate dehydrogenase	protein-coding	0.0	20.0	0.0	0.0	6.5	0.0
Merged-chr6-72149888-2	chr6	72149340	72150340	+	556.0	f0_balb.idr|f1_balb.idr	intron (NM_001035228, intron 6 of 6)	MER5B|DNA|hAT-Charlie	-26643.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167633785-1	chr2	167633285	167634285	+	556.0	f1_c57bl6.idr	Intergenic	Intergenic	-1780.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-86144044-2	chr3	86143544	86144544	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-1376.0	NM_016959	20091.0	Mm.391785	NM_016959	ENSMUSG00000028081	Rps3a1	Rps3a	ribosomal protein S3A1	protein-coding	0.0	5.0	1.0	0.0	5.0	1.0
Merged-chr15-36790556-1	chr15	36790056	36791056	+	556.0	f1_balb.idr	intron (NM_001356569, intron 3 of 6)	intron (NM_001356569, intron 3 of 6)	376.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-101506352-1	chr3	101505852	101506852	+	556.0	f1_c57bl6.idr	Intergenic	Intergenic	98355.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	3.0	0.0	0.5	0.0	0.0	0.0
Merged-chr14-72536332-2	chr14	72535832	72536832	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	173671.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-88122265-2	chr17	88121765	88122765	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-3247.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138283676-2	chr5	138283176	138284176	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016964, intron 4 of 33)	intron (NM_016964, intron 4 of 33)	3167.0	NM_016964	50878.0	Mm.285609	NM_016964	ENSMUSG00000036928	Stag3	SA-2	stromal antigen 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134556126-1	chr4	134555626	134556626	+	556.0	f1_c57bl6.idr	Intergenic	Intergenic	-3960.0	NM_029100	74777.0	Mm.29773	NM_029100	ENSMUSG00000050989	Selenon	1110019I12Rik|AI414492|SelN|Sepn1	selenoprotein N	protein-coding	5.0	1.5	3.0	3.5	1.5	0.0
Merged-chr11-87750768-2	chr11	87750268	87751268	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6096.0	NR_029555	387160.0		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	36.0	136.5	79.5	53.5	131.5	84.0
Merged-chr14-62077061-1	chr14	62076561	62077561	+	556.0	f0_balb.idr	Intergenic	Intergenic	215918.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-54162860-2	chr12	54162360	54163360	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41014.0	NM_028133	112407.0	Mm.133037	NM_028133	ENSMUSG00000035105	Egln3	2610021G09Rik|AI505553|AI648162|Hif-p4h-3|Phd3|SM-20	egl-9 family hypoxia-inducible factor 3	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr3-36039598-2	chr3	36039098	36040098	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178418, intron 3 of 11)	ORR1B1-int|LTR|ERVL-MaLR	13949.0	NM_178418	241943.0	Mm.269018	NM_178418	ENSMUSG00000047696	Ccdc144b	-	coiled-coil domain containing 144B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-135529781-2	chr2	135529281	135530281	+	555.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53439.0	NR_015544	320684.0	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8663033-3	chr11	8662550	8663550	+	555.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	1485.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	21.0	23.0	31.5	24.5	26.0	26.5
Merged-chr11-55013923-2	chr11	55013423	55014423	+	555.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 2 of 24)	intron (NR_138556, intron 2 of 24)	19548.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56559990-2	chr17	56559490	56560490	+	555.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-5603.0	NR_130128	100504425.0	Mm.384143	NR_130128	ENSMUSG00000110218	Gm20219	Tincr	predicted gene, 20219	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-65871482-2	chr14	65870982	65871982	+	555.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34180.0	NM_145944	67179.0	Mm.214576	NM_145944	ENSMUSG00000022035	Ccdc25	2610528H13Rik|NSrp70	coiled-coil domain containing 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79775309-2	chr15	79774839	79775839	+	555.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017470)	promoter-TSS (NM_017470)	-872.0	NM_017470	54152.0	Mm.288159	NM_017470	ENSMUSG00000022420	Dnal4	D15Ertd424e|Dnalc4	dynein, axonemal, light chain 4	protein-coding	4.5	18.5	21.5	12.5	22.0	16.0
Merged-chr16-75900380-3	chr16	75899880	75900880	+	555.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023380, intron 1 of 7)	intron (NM_023380, intron 1 of 7)	8886.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-52458948-3	chr15	52458445	52459445	+	555.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	163392.0	NM_172816	239436.0	Mm.208831	NM_172816	ENSMUSG00000022315	Slc30a8	C820002P14Rik|ZnT-8|ZnT8	solute carrier family 30 (zinc transporter), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-122990134-2	chr4	122989634	122990634	+	555.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-5797.0	NM_001303121	16918.0	Mm.1055	NM_008506	ENSMUSG00000028654	Mycl	AW536278|L-myc|Lmyc-1|Lmyc1|Mycl1|bHLHe38	v-myc avian myelocytomatosis viral oncogene lung carcinoma derived	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50313388-2	chr11	50312888	50313888	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110500, intron 1 of 14)	intron (NM_001110500, intron 1 of 14)	12285.0	NM_001110499	12330.0	Mm.248827	NM_007597	ENSMUSG00000020368	Canx	1110069N15Rik|AI988026|Cnx|D11Ertd153e	calnexin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5604807-2	chr17	5604307	5605307	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	112207.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120497132-2	chr5	120496632	120497632	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023625, intron 2 of 11)	intron (NM_023625, intron 2 of 11)	6491.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110084011-2	chr7	110083511	110084511	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009281, intron 11 of 15)	intron (NM_009281, intron 11 of 15)	22309.0	NM_009281	20841.0	Mm.10815	NM_009281	ENSMUSG00000061079	Zfp143	AA959806|AU015869|D7Ertd805e|KRAB14|SBF|Staf|Zfp79|Zfp80-rs1|Znf143|pHZ-1	zinc finger protein 143	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96024132-2	chr9	96023632	96024632	+	555.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011916, exon 31 of 42)	exon (NM_011916, exon 31 of 42)	69372.0	NM_011916	24127.0	Mm.291179	NM_011916	ENSMUSG00000032410	Xrn1	Dhm2|exo|mXrn1	5'-3' exoribonuclease 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-47305777-2	chr4	47305277	47306277	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 34 of 39)	B4A|SINE|B4	-47445.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-71318793-2	chr2	71318275	71319275	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 5 of 17)	intron (NM_172436, intron 5 of 17)	48779.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79076107-2	chr15	79075607	79076607	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145139, intron 2 of 12)	intron (NM_145139, intron 2 of 12)	884.0	NM_145139	223691.0	Mm.206404	NM_145139	ENSMUSG00000033047	Eif3l	0610011H21Rik|D15N1e|Eif3eip|Eif3ip|Eif3s6ip|HSP-66Y|PAF67	eukaryotic translation initiation factor 3, subunit L	protein-coding	3.5	3.0	7.0	0.0	8.0	2.5
Merged-chr14-32930518-2	chr14	32930018	32931018	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178791, intron 7 of 7)	intron (NM_178791, intron 7 of 7)	-60864.0	NM_001146021	67580.0	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19796949-2	chr7	19796449	19797449	+	555.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023224)	promoter-TSS (NM_023224)	-140.0	NM_023224	80794.0	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92719114-2	chr16	92718614	92719614	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-21785.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73065117-2	chr2	73064617	73065617	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84671.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122558970-2	chr14	122558470	122559470	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 2 of 24)	MLTR25C|LTR|ERVK	24642.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86344008-2	chr1	86343508	86344508	+	555.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010880)	TTS (NM_010880)	7277.0	NR_028478	100303740.0	Mm.154378	NR_028478	ENSMUSG00000064837	Snora75	MBI-55	small nucleolar RNA, H/ACA box 75	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117652979-2	chr11	117652479	117653479	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1310.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122047396-2	chr14	122046896	122047896	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12722.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	7.0	0.0	0.0	0.0	0.5	0.0
Merged-chr12-16831214-2	chr12	16830715	16831715	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	20250.0	NM_033270	50496.0	Mm.23296	NM_033270	ENSMUSG00000057469	E2f6	AI462434|E2F6a|E2F6b|EMA	E2F transcription factor 6	protein-coding	5.0	0.0	4.0	2.5	9.5	10.5
Merged-chr10-8847430-2	chr10	8846930	8847930	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	38640.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106271966-2	chr11	106271466	106272466	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130187, intron 1 of 12)	intron (NM_001130187, intron 1 of 12)	1006.0	NM_001130187	83796.0	Mm.21772	NM_031878	ENSMUSG00000078619	Smarcd2	AW322457|Baf60b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-92637185-2	chr15	92636685	92637685	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164594, intron 1 of 7)	Lx9|LINE|L1	40076.0	NM_001164594	239618.0	Mm.309826	NM_001164593	ENSMUSG00000036218	Pdzrn4	1110017D07Rik|LNX4|SAMCAP3L|mKIAA3027	PDZ domain containing RING finger 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-172446222-2	chr2	172445722	172446722	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025542, intron 3 of 8)	B4A|SINE|B4	5644.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53102160-2	chr4	53101660	53102660	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 7 of 49)	B3|SINE|B2	57735.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16773339-2	chr19	16772839	16773839	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173028, intron 1 of 71)	intron (NM_173028, intron 1 of 71)	7594.0	NM_173028	271564.0	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25362809-2	chr10	25362309	25363309	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 1 of 16)	intron (NM_001358754, intron 1 of 16)	3011.0	NM_001358751	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0.5	19.5	19.5	7.5	7.0	7.0
Merged-chr15-76542899-2	chr15	76542399	76543399	+	555.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029643)	TTS (NM_029643)	3956.0	NM_029643	52710.0	Mm.28597	NM_029643	ENSMUSG00000022560	Slc52a2	2010003P03Rik|D15Ertd747e|GPCR42|Gpr172b|PAR2|mRFT1	solute carrier protein 52, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96440824-2	chr3	96440324	96441324	+	555.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001256180, exon 3 of 5)	exon (NM_001256180, exon 3 of 5)	11482.0	NM_001256180	329716.0	Mm.275223	NM_183223	ENSMUSG00000046317	BC107364	D730018G16	cDNA sequence BC107364	protein-coding	0.0	0.0	1.5	0.0	0.0	3.0
Merged-chr1-54562909-2	chr1	54562409	54563409	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5225.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	9.5	16.5	20.5	44.0	55.5	32.0
Merged-chr1-118312074-2	chr1	118311574	118312574	+	555.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011650)	promoter-TSS (NM_011650)	-728.0	NM_011650	22099.0	Mm.426637	NM_011650	ENSMUSG00000026374	Tsn	2610034C24Rik|AU040286|C3PO|TB-RBP	translin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31060394-2	chr17	31059894	31060894	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 1 of 14)	intron (NM_009593, intron 1 of 14)	2700.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	17.0	44.0	36.5	6.0	26.0	21.5
Merged-chr19-55926216-2	chr19	55925716	55926716	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 14 of 14)	intron (NM_001331146, intron 14 of 14)	30895.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167374006-2	chr2	167373500	167374500	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24822.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-95152416-2	chr4	95151916	95152916	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100194.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83571378-2	chr17	83570878	83571878	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57045.0	NM_001159529	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92468092-2	chr16	92467592	92468592	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-1923.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-46182829-2	chr16	46182329	46183329	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27752.0	NM_001304528	11615.0	Mm.330692	NM_001304528	ENSMUSG00000048087	Gm4737	AL024110|EG11615	predicted gene 4737	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29444628-2	chr17	29444128	29445128	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-46417.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.5	4.0	1.5	1.0	1.5	0.5
Merged-chr2-40300101-2	chr2	40299601	40300601	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-1073752.0	NM_024209	67857.0	Mm.389242	NM_024209	ENSMUSG00000026753	Ppp6c	2310003C10Rik|Pp6C	protein phosphatase 6, catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-95552409-2	chr6	95551909	95552909	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001326558, intron 9 of 10)	intron (NM_001326558, intron 9 of 10)	140473.0	NM_001326558	20917.0	Mm.371585	NM_011507	ENSMUSG00000061838	Suclg2	AF171077|AW556404|D6Wsu120e|G-SCS|GTPSCS|SCS-betaG	succinate-Coenzyme A ligase, GDP-forming, beta subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-68609174-2	chr14	68608674	68609674	+	555.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_183366, exon 21 of 22)	exon (NM_183366, exon 21 of 22)	-27102.0	NM_021475	58860.0	Mm.36742	NM_021475	ENSMUSG00000022057	Adamdec1	2210414L24Rik|AI574231|Dcsn	ADAM-like, decysin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90936044-2	chr16	90935544	90936544	+	555.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164483)	TTS (NM_001164483)	-1195.0	NM_026502	68001.0	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109488039-2	chr4	109487539	109488539	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-11534.0	NM_013876	29864.0	Mm.392580	NM_013876	ENSMUSG00000028557	Rnf11	-	ring finger protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11185902-2	chr8	11185402	11186402	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126903.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-40902209-2	chr14	40901709	40902709	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9244.0	NM_177816	328381.0	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70856293-2	chr17	70855793	70856793	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2761.0	NM_001164074	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-85872473-2	chr10	85871973	85872973	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133993, intron 1 of 14)	intron (NM_133993, intron 1 of 14)	642.0	NM_133993	103136.0	Mm.18834	NM_133993	ENSMUSG00000001785	Pwp1	2310058A11Rik|2610205J09Rik|AI098170|AL022879|AV083409|AW550690	PWP1 homolog, endonuclein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9872797-2	chr13	9872297	9873297	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107476.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97364113-2	chr11	97363613	97364613	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138657, intron 1 of 9)	intron (NM_138657, intron 1 of 9)	1562.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	5.0	5.5	2.0	3.0	1.0	0.5
Merged-chr8-64391534-2	chr8	64391034	64392034	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122907.0	NR_030491	735270.0		NR_030491	ENSMUSG00000076042	Mir710	Mirn710|mmu-mir-710	microRNA 710	ncRNA	0.0	0.0	0.0	0.0	3.5	0.0
Merged-chr11-121226280-2	chr11	121225780	121226780	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252550, intron 3 of 5)	intron (NM_001252550, intron 3 of 5)	2660.0	NM_001254735	217370.0	Mm.27182	NM_144832	ENSMUSG00000039294	BC017643	-	cDNA sequence BC017643	protein-coding	0.0	1.5	2.0	0.5	0.0	3.0
Merged-chr7-5028540-2	chr7	5028040	5029040	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033383, intron 1 of 2)	intron (NM_001033383, intron 1 of 2)	8164.0	NM_001033383	319748.0	Mm.86607	NM_001033383	ENSMUSG00000074405	Zfp865	6430526N21Rik|Znf865	zinc finger protein 865	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-72268411-2	chr5	72267911	72268911	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 14 of 22)	MER5B|DNA|hAT-Charlie	65068.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23976385-2	chr16	23975885	23976885	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348026, intron 3 of 9)	intron (NM_001348026, intron 3 of 9)	4898.0	NM_001348026	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-27151763-2	chr14	27151263	27152263	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 1 of 12)	intron (NM_001289686, intron 1 of 12)	7770.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126683283-2	chr4	126682783	126683783	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011970, intron 1 of 5)	RMER6A|LTR|ERVK	5640.0	NM_011970	26445.0	Mm.22233	NM_011970	ENSMUSG00000028837	Psmb2	AU045357|AW108089|C7-I|D4Wsu33e|HC7-I	proteasome (prosome, macropain) subunit, beta type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158129057-2	chr2	158128557	158129557	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 7 of 12)	intron (NM_009373, intron 7 of 12)	17335.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107237887-2	chr4	107237387	107238387	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029985, intron 6 of 7)	intron (NM_029985, intron 6 of 7)	15646.0	NM_029985	77809.0	Mm.29681	NM_029985	ENSMUSG00000028617	Lrrc42	A930011F22Rik|AA536996	leucine rich repeat containing 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-82993102-2	chr6	82992602	82993602	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 4 of 9)	B3|SINE|B2	40369.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr10-80568283-2	chr10	80567783	80568783	+	555.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_078477, exon 2 of 2)	3' UTR (NM_078477, exon 2 of 2)	-6723.0	NM_025852	66932.0	Mm.1116	NM_025852	ENSMUSG00000047417	Rexo1	1700021P10Rik|2610511M11Rik|AW050347|EloA-BP1|Rex1|Tceb3bp1	REX1, RNA exonuclease 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-56790863-2	chr10	56790363	56791363	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	358882.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-75438448-2	chr9	75437948	75438948	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-3076.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	0.0	7.0	0.0	0.0	7.0	0.5
Merged-chr15-78582832-2	chr15	78582332	78583332	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1243.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	2.5	6.0	6.0	2.5	6.0	10.0
Merged-chr8-47875500-2	chr8	47875000	47876000	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133791, intron 8 of 22)	intron (NM_133791, intron 8 of 22)	51018.0	NM_029383	75677.0	Mm.390033	NM_029383	ENSMUSG00000038064	Cldn22	2210404A22Rik|5330431C14Rik|9530051B05Rik	claudin 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-144043290-2	chr2	144042790	144043790	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001044750, intron 1 of 2)	intron (NM_001044750, intron 1 of 2)	10188.0	NM_207275	403171.0	Mm.389362	NM_207275	ENSMUSG00000037307	Banf2	4930517K23Rik|Baf-L|Baf-like|Gm115	barrier to autointegration factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180247402-2	chr1	180246902	180247902	+	555.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128605, intron 1 of 10)	intron (NM_001128605, intron 1 of 10)	-1452.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35585577-2	chr8	35585093	35586093	+	555.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_040376, intron 1 of 2)	ORR1F|LTR|ERVL-MaLR	-2205.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	1.5	10.0	12.5	0.0	16.5	1.5
Merged-chr2-27261501-2	chr2	27261001	27262001	+	555.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009500)	TTS (NM_009500)	-14198.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91886104-2	chr16	91885605	91886605	+	555.25	f0_c57.idr|f1_c57bl6.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	45525.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5932417-2	chr17	5931917	5932917	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8863.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24972664-1	chr16	24972164	24973164	+	555.0	f1_balb.idr	intron (NM_178665, intron 11 of 12)	intron (NM_178665, intron 11 of 12)	-86975.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143406188-2	chr5	143405688	143406688	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025841, intron 1 of 4)	B3|SINE|B2	2368.0	NM_025841	66913.0	Mm.181880	NM_025841	ENSMUSG00000079111	Kdelr2	1110007A14Rik	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9337618-1	chr4	9337118	9338118	+	555.0	f0_balb.idr	intron (NM_001355183, intron 2 of 5)	intron (NM_001355183, intron 2 of 5)	68301.0	NM_028940	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106105989-2	chr11	106105489	106106489	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 2 of 15)	(GGGGA)n|Simple_repeat|Simple_repeat	21087.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-73355537-1	chr8	73355037	73356037	+	555.0	f1_c57bl6.idr	Intergenic	Intergenic	-1997.0	NM_010687	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0.0	3.0	0.0	0.0	1.5	0.0
Merged-chr15-76509880-2	chr15	76509380	76510380	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010046, intron 1 of 16)	intron (NM_010046, intron 1 of 16)	2114.0	NM_010046	13350.0	Mm.22633	NM_010046	ENSMUSG00000022555	Dgat1	ARAT|C75990|D15Ertd23e|Dgat	diacylglycerol O-acyltransferase 1	protein-coding	1.0	0.0	0.5	3.0	0.0	0.0
Merged-chr17-34293001-1	chr17	34292501	34293501	+	555.0	f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-5230.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	35.5	112.5	36.0	53.0	82.5	27.5
Merged-chr18-57132942-1	chr18	57132442	57133442	+	555.0	f0_c57.idr	promoter-TSS (NM_001001979)	promoter-TSS (NM_001001979)	-148.0	NM_001001979	70417.0	Mm.297863	NM_001001979	ENSMUSG00000024593	Megf10	3000002B06Rik|Gm331	multiple EGF-like-domains 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-86817307-2	chr18	86816807	86817807	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	104996.0	NM_001361145	12405.0	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-76001712-1	chr2	76001212	76002212	+	555.0	f1_c57bl6.idr	intron (NM_001081033, intron 19 of 19)	intron (NM_001081033, intron 19 of 19)	-19745.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	1.0	6.5	1.5	0.0	0.0	0.0
Merged-chr14-30705043-1	chr14	30704543	30705543	+	555.0	f1_balb.idr	Intergenic	B1_Mur2|SINE|Alu	-9806.0	NM_019460	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	1.5	0.0	2.0	2.0	0.0	5.5
Merged-chr9-55534934-2	chr9	55534434	55535434	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6215.0	NM_027397	104360.0	Mm.273996	NM_027397	ENSMUSG00000032318	Isl2	3110001N10Rik	insulin related protein 2 (islet 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111101861-2	chr10	111101361	111102361	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62941.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114941346-1	chr5	114940846	114941846	+	555.0	f1_balb.idr	promoter-TSS (NM_028211)	promoter-TSS (NM_028211)	-856.0	NM_028211	72357.0	Mm.292672	NM_028211	ENSMUSG00000029559	2210016L21Rik	-	RIKEN cDNA 2210016L21 gene	protein-coding	5.5	2.0	1.0	2.5	1.0	1.0
Merged-chr3-76005866-1	chr3	76005366	76006366	+	555.0	f0_balb.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-48917.0	NM_001291069	73124.0	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123034812-1	chr8	123034312	123035312	+	555.0	f0_balb.idr	intron (NM_001081379, intron 1 of 12)	B3A|SINE|B2	7472.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	10.5	8.0	5.0	5.0	5.0	3.0
Merged-chr9-121704054-2	chr9	121703554	121704554	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178677, intron 1 of 7)	B1_Mur4|SINE|Alu	975.0	NM_178677	215474.0	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32574346-2	chr2	32573846	32574846	+	555.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010073)	TTS (NM_010073)	-1372.0	NM_198191	227733.0	Mm.78923	NM_198191	ENSMUSG00000046854	Pip5kl1	BC028795	phosphatidylinositol-4-phosphate 5-kinase-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119157416-1	chr4	119156916	119157916	+	555.0	f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	16440.0	NM_001145935	195522.0	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	0.0	3.0	0.0	0.0	1.0	0.5
Merged-chr15-44615962-1	chr15	44615462	44616462	+	555.0	f1_balb.idr	Intergenic	RMER10B|LTR|ERVL	-3265.0	NM_001357690	55960.0	Mm.287896	NM_019480	ENSMUSG00000022339	Ebag9	AI835379|Rcas1	estrogen receptor-binding fragment-associated gene 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91453356-2	chr16	91452856	91453856	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-11748.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65696863-1	chr18	65696363	65697363	+	555.0	f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1405.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	6.5	23.5	18.0	31.0	26.0	41.0
Merged-chr15-86205766-2	chr15	86205266	86206266	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8693.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119087737-1	chr9	119087237	119088237	+	555.0	f0_c57.idr	intron (NM_019676, intron 1 of 14)	intron (NM_019676, intron 1 of 14)	524.0	NM_001293648	18799.0	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding	2.0	0.0	1.0	1.5	1.0	0.0
Merged-chr15-3221574-1	chr15	3221074	3222074	+	555.0	f1_c57bl6.idr	Intergenic	Intergenic	-49193.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86658749-2	chr6	86658249	86659249	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010751, intron 3 of 5)	intron (NM_010751, intron 3 of 5)	10410.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	3.5	0.0	7.0	3.5	0.0	4.5
Merged-chr17-35875316-2	chr17	35874816	35875816	+	555.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175242, exon 3 of 3)	3' UTR (NM_175242, exon 3 of 3)	-4462.0	NM_026987	69192.0	Mm.390986	NM_026987	ENSMUSG00000024422	Dhx16	2410006N22Rik|DBP2|Ddx16|mKIAA0577	DEAH (Asp-Glu-Ala-His) box polypeptide 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20728317-1	chr14	20727817	20728817	+	555.0	f1_c57bl6.idr	intron (NM_010811, intron 5 of 14)	intron (NM_010811, intron 5 of 14)	6245.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78264934-1	chr10	78264434	78265434	+	555.0	f0_balb.idr	Intergenic	Intergenic	-20292.0	NM_001081055	216131.0	Mm.27539	NM_001081055	ENSMUSG00000000374	Trappc10	B230307C21Rik|Gm870|Tmem1|b2b2416Clo|b2b2613Clo	trafficking protein particle complex 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-137310434-1	chr7	137309934	137310934	+	555.0	f1_c57bl6.idr	intron (NM_001113415, intron 4 of 15)	CpG-13675	4011.0	NM_001113415	13593.0	Mm.258708	NM_010096	ENSMUSG00000010476	Ebf3	3110018A08Rik|O/E-2|mKIAA4201	early B cell factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110178036-1	chr5	110177536	110178536	+	555.0	f0_balb.idr	intron (NM_001347389, intron 1 of 23)	intron (NM_001347389, intron 1 of 23)	1179.0	NM_008146	269682.0	Mm.9392	NM_008146	ENSMUSG00000029502	Golga3	5330413L04|5430416E01Rik|AI449376|AW490576|G1-499-14|Mea-2|Mea2|Mea2/Golga3|repro27	golgi autoantigen, golgin subfamily a, 3	protein-coding	26.5	47.5	27.0	11.5	34.0	27.5
Merged-chr1-85288064-1	chr1	85287564	85288564	+	555.0	f1_balb.idr	Intergenic	Intergenic	-17498.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145417107-1	chr6	145416607	145417607	+	555.0	f0_balb.idr	intron (NM_028742, intron 7 of 9)	intron (NM_028742, intron 7 of 9)	17818.0	NM_028742	74071.0	Mm.441497	NM_028742	ENSMUSG00000054966	Lmntd1	4933403M22Rik|AI482300|Ifltd1|Lmna-rs1|Lmna1	lamin tail domain containing 1	protein-coding	0.0	6.5	0.0	0.0	0.0	4.5
Merged-chr12-8936405-2	chr12	8935905	8936905	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008640, intron 5 of 6)	B2_Mm1t|SINE|B2	-11524.0	NM_010770	17182.0	Mm.42226	NM_010770	ENSMUSG00000020583	Matn3	AV009181	matrilin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126465439-2	chr7	126464939	126465939	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2366.0	NM_007504	11937.0	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114862416-1	chr6	114861916	114862916	+	555.0	f1_c57bl6.idr	exon (NM_177683, exon 5 of 5)	exon (NM_177683, exon 5 of 5)	59405.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124077014-1	chr5	124076514	124077514	+	555.0	f1_c57bl6.idr	intron (NM_019875, intron 8 of 11)	intron (NM_019875, intron 8 of 11)	18784.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-115245696-1	chr10	115245196	115246196	+	555.0	f0_balb.idr	intron (NM_025706, intron 1 of 16)	intron (NM_025706, intron 1 of 16)	5797.0	NM_025706	66687.0	Mm.22252	NM_025706	ENSMUSG00000020130	Tbc1d15	4432405K22Rik|AU022358|AU023730|AW557774|Ly6dl|Rab7-GAP	TBC1 domain family, member 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-98715689-2	chr1	98715189	98716189	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	294565.0	NM_027584	70866.0	Mm.389164	NM_027584	ENSMUSG00000026336	Slco6d1	4921511I05Rik	solute carrier organic anion transporter family, member 6d1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117227126-1	chr5	117226626	117227626	+	555.0	f1_balb.idr	intron (NM_001081308, intron 11 of 19)	intron (NM_001081308, intron 11 of 19)	60438.0	NM_018858	23980.0	Mm.195898	NM_018858	ENSMUSG00000032959	Pebp1	HCNP|Pbp|Pbp1|Pbpr|Rkip	phosphatidylethanolamine binding protein 1	protein-coding	0.0	9.5	3.0	0.0	8.0	1.0
Merged-chr2-29251552-1	chr2	29251052	29252052	+	555.0	f1_c57bl6.idr	intron (NR_029460, intron 1 of 1)	CpG	1441.0	NR_029460	76220.0	Mm.330108	NR_029460	ENSMUSG00000079499	6530402F18Rik	mKIAA1857	RIKEN cDNA 6530402F18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-67430737-1	chr3	67430237	67431237	+	555.0	f1_balb.idr	intron (NM_138591, intron 1 of 17)	intron (NM_138591, intron 1 of 17)	622.0	NM_138591	28030.0	Mm.122466	NM_138591	ENSMUSG00000027774	Gfm1	AW545374|D3Wsu133e|Gfm	G elongation factor, mitochondrial 1	protein-coding	1.5	8.0	21.5	11.5	20.0	11.0
Merged-chr15-49165925-1	chr15	49165425	49166425	+	555.0	f1_balb.idr	Intergenic	Lx8|LINE|L1	-373936.0	NM_001081391	239420.0	Mm.309363	NM_001081391	ENSMUSG00000022311	Csmd3	4930500N14Rik|mKIAA1894	CUB and Sushi multiple domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115903325-1	chr11	115902825	115903825	+	555.0	f1_c57bl6.idr	intron (NM_183259, intron 1 of 2)	intron (NM_183259, intron 1 of 2)	3186.0	NM_183259	66528.0	Mm.275740	NM_183259	ENSMUSG00000048442	Smim5	2210020M01Rik	small integral membrane protein 5	protein-coding	2.5	0.5	4.5	0.0	2.5	0.0
Merged-chr7-144944163-1	chr7	144943663	144944663	+	555.0	f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4238.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	1.5	1.5	0.0	0.0	0.0	1.0
Merged-chr1-59583517-1	chr1	59583017	59584017	+	555.0	f0_balb.idr	intron (NM_001013771, intron 12 of 19)	intron (NM_001013771, intron 12 of 19)	59223.0	NM_001357842	381260.0	Mm.486706	NM_001013771	ENSMUSG00000047361	Gm973	AW554518	predicted gene 973	protein-coding	5.0	4.5	7.5	0.0	4.0	2.5
Merged-chr5-98020813-1	chr5	98020313	98021313	+	555.0	f1_balb.idr	intron (NM_133738, intron 3 of 16)	intron (NM_133738, intron 3 of 16)	10149.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	0.0	6.0	1.5	0.0	2.5	1.5
Merged-chr12-73577455-2	chr12	73576955	73577955	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7341.0	NM_001313977	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-26263907-2	chr3	26263407	26264407	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138666, intron 1 of 7)	(GA)n|Simple_repeat|Simple_repeat	68002.0	NM_138666	192167.0	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80825658-1	chr7	80825158	80826158	+	555.0	f1_balb.idr	Intergenic	Intergenic	-22327.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5721989-2	chr17	5721489	5722489	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 5 of 8)	intron (NM_146073, intron 5 of 8)	-76668.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-117919422-1	chr6	117918922	117919922	+	555.0	f1_balb.idr	intron (NM_001166429, intron 3 of 3)	intron (NM_001166429, intron 3 of 3)	2128.0	NM_001166427	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-16536384-2	chr5	16535884	16536884	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-17111.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98818042-2	chr7	98817542	98818542	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17070.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90264378-2	chr9	90263878	90264878	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	6391.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154092468-2	chr4	154091968	154092968	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011642, intron 3 of 13)	intron (NM_011642, intron 3 of 13)	4705.0	NM_001126330	22062.0	Mm.78015	NM_011642	ENSMUSG00000029026	Trp73	TAp73|Tp73|deltaNp73|p73	transformation related protein 73	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-58902728-1	chr11	58902228	58903228	+	555.0	f1_balb.idr	intron (NM_011758, intron 2 of 4)	L1M4b|LINE|L1	1497.0	NM_011758	22698.0	Mm.127646	NM_011758	ENSMUSG00000037001	Zfp39	CTfin33|Zfp-39	zinc finger protein 39	protein-coding	0.0	6.5	1.5	1.5	2.5	2.0
Merged-chr11-110972798-1	chr11	110972298	110973298	+	555.0	f1_c57bl6.idr	intron (NM_010604, intron 1 of 1)	MTA_Mm|LTR|ERVL-MaLR	4765.0	NM_001252207	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	11.0	55.5	27.5	5.5	24.5	14.5
Merged-chr2-30753309-1	chr2	30752809	30753809	+	555.0	f0_balb.idr	Intergenic	Intergenic	32099.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87908982-1	chr3	87908482	87909482	+	555.0	f1_balb.idr	intron (NM_001331051, intron 1 of 6)	intron (NM_001331051, intron 1 of 6)	2132.0	NM_001331052	15191.0	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	0.0	10.0	5.0	2.5	16.5	7.0
Merged-chr3-134240628-1	chr3	134240128	134241128	+	555.0	f1_balb.idr	promoter-TSS (NR_035435)	promoter-TSS (NR_035435)	-45.0	NR_035435	100316832.0		NR_035435	ENSMUSG00000084564	Mir1895	Mirn1895|mmu-mir-1895	microRNA 1895	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46139765-2	chr8	46139265	46140265	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-15619.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123707430-2	chr5	123706930	123707930	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027494, intron 9 of 13)	intron (NM_027494, intron 9 of 13)	13614.0	NM_027494	70650.0	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149788451-2	chr4	149787951	149788951	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14184.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	1.5	0.0	2.0	3.5	6.0	9.5
Merged-chr12-112616781-1	chr12	112616281	112617281	+	555.0	f1_c57bl6.idr	Intergenic	Intergenic	-3266.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-39175996-2	chr3	39175496	39176496	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERVK10D3_I-int|LTR|ERVK	289056.0	NM_183221	329628.0	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-16079412-1	chr3	16078912	16079912	+	555.0	f1_balb.idr	Intergenic	Intergenic	-73080.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135453867-2	chr1	135453367	135454367	+	555.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_049188)	TTS (NR_049188)	816.0	NR_049188	100885827.0		NR_049188	ENSMUSG00000093515	Mir1231	Gm23720|mir-1231|mmu-mir-1231	microRNA 1231	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-19766315-1	chr17	19765815	19766815	+	555.0	f1_c57bl6.idr	Intergenic	L1Md_F|LINE|L1	-7048.0	NM_001104565	627636.0	Mm.469855	NM_001104565	ENSMUSG00000091771	Vmn2r103	EG627636|Vmn103	vomeronasal 2, receptor 103	protein-coding	0.0	8.0	1.0	3.0	0.0	1.0
Merged-chr4-117658599-1	chr4	117658099	117659099	+	555.0	f1_balb.idr	intron (NM_001356405, intron 8 of 8)	intron (NM_001356405, intron 8 of 8)	23626.0	NM_023178	66233.0	Mm.29142	NM_023178	ENSMUSG00000009640	Dmap1	1500016M21Rik|DNMAP1|DNMTAP1|Dmtap1|mKIAA1425	DNA methyltransferase 1-associated protein 1	protein-coding	0.0	0.0	0.5	0.0	4.5	3.5
Merged-chr5-147450458-1	chr5	147449958	147450958	+	555.0	f0_balb.idr	intron (NM_028291, intron 1 of 18)	intron (NM_028291, intron 1 of 18)	20302.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	4.0	15.0	17.0	18.0	23.5	22.5
Merged-chr18-80197274-2	chr18	80196774	80197774	+	555.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_199197, exon 3 of 6)	exon (NM_199197, exon 3 of 6)	3345.0	NM_199197	68731.0	Mm.186936	NM_199197	ENSMUSG00000024570	Rbfa	1110032A13Rik|AI595940	ribosome binding factor A	protein-coding	3.5	2.0	4.0	0.0	6.0	8.0
Merged-chr11-22632500-1	chr11	22632000	22633000	+	555.0	f0_balb.idr	Intergenic	Intergenic	120217.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	0.0	0.0	0.5	0.0	0.0	2.0
Merged-chr6-124744423-2	chr6	124743923	124744923	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007881, intron 7 of 9)	intron (NM_007881, intron 7 of 9)	-3344.0	NM_013535	14790.0	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-15562668-2	chr9	15562168	15563168	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181816, intron 11 of 11)	intron (NM_181816, intron 11 of 11)	57173.0	NM_133214	170748.0	Mm.86572	NM_133214	ENSMUSG00000058173	Smco4	Fn5	single-pass membrane protein with coiled-coil domains 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-16822658-1	chr12	16822158	16823158	+	555.0	f1_c57bl6.idr	intron (NM_033270, intron 5 of 6)	intron (NM_033270, intron 5 of 6)	11693.0	NM_033270	50496.0	Mm.23296	NM_033270	ENSMUSG00000057469	E2f6	AI462434|E2F6a|E2F6b|EMA	E2F transcription factor 6	protein-coding	0.0	1.0	2.5	0.0	0.0	0.5
Merged-chr4-10450500-1	chr4	10450000	10451000	+	555.0	f1_balb.idr	Intergenic	RLTR1B-int|LTR|ERV1	347302.0	NR_045185	73624.0	Mm.67392	NR_045185	ENSMUSG00000086080	1700123O12Rik	-	RIKEN cDNA 1700123O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-20828146-1	chr1	20827646	20828646	+	555.0	f1_c57bl6.idr	Intergenic	Intergenic	-7834.0	NM_008563	17215.0	Mm.4502	NM_008563	ENSMUSG00000041859	Mcm3	AL033361|C80350|Mcmd|P1|P1-MCM3|p1.m	minichromosome maintenance complex component 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38973390-2	chr6	38972872	38973872	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	intron (NM_011539, intron 3 of 12)	54386.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-32144651-2	chr1	32144151	32145151	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-28071.0	NM_133235	170771.0	Mm.336594	NM_133235	ENSMUSG00000026058	Khdrbs2	6330586C16Rik|Slim1|Slm-1|Slm1|TG-RP135|Tg(LRRK2*R1441G)135Cjli|mSLM-1	KH domain containing, RNA binding, signal transduction associated 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88404583-2	chr3	88404083	88405083	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025928, intron 1 of 4)	intron (NM_025928, intron 1 of 4)	5814.0	NM_001310605	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121197978-2	chr5	121197478	121198478	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6523.0	NM_011290	19988.0	Mm.262021	NM_011290	ENSMUSG00000029614	Rpl6	Taxreb107	ribosomal protein L6	protein-coding	7.0	5.0	0.5	5.0	3.5	6.5
Merged-chr2-172422235-2	chr2	172421735	172422735	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080820, intron 2 of 6)	intron (NM_001080820, intron 2 of 6)	-18343.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6872792-1	chr2	6872292	6873292	+	555.0	f0_balb.idr	promoter-TSS (NM_001347094)	promoter-TSS (NM_001347094)	-757.0	NM_001347094	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27707356-1	chr17	27706856	27707856	+	555.0	f1_c57bl6.idr	intron (NM_001286743, intron 8 of 9)	intron (NM_001286743, intron 8 of 9)	21595.0	NM_013891	30051.0	Mm.26768	NM_013891	ENSMUSG00000024215	Spdef	PDEF|Pse	SAM pointed domain containing ets transcription factor	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr8-123015262-1	chr8	123014762	123015762	+	555.0	f0_balb.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	27022.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	17.0	16.0	24.0	18.5	16.0	22.5
Merged-chr17-73360467-1	chr17	73359967	73360967	+	555.0	f0_balb.idr	exon (NM_001033444, exon 5 of 23)	exon (NM_001033444, exon 5 of 23)	38829.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4569332-1	chr2	4568832	4569832	+	555.0	f0_balb.idr	intron (NM_001177844, intron 2 of 11)	intron (NM_001177844, intron 2 of 11)	9578.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-50939025-2	chr6	50938525	50939525	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	162910.0	NR_045984	319981.0	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	2.5	2.0	2.0	0.0	3.5	0.0
Merged-chr5-105875042-1	chr5	105874542	105875542	+	555.0	f1_c57bl6.idr	Intergenic	Intergenic	-1526.0	NR_030777	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	1.5	1.0	8.0	3.5	1.0	0.0
Merged-chr10-80341894-2	chr10	80341394	80342394	+	555.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001285435, exon 11 of 13)	exon (NM_001285435, exon 11 of 13)	6554.0	NM_001285435	66548.0	Mm.71891	NM_025629	ENSMUSG00000043822	Adamtsl5	2010109H09Rik|Thsd6	ADAMTS-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-94715575-2	chr4	94715075	94716075	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MARNA|DNA|TcMar-Mariner	-23714.0	NM_001290549	21687.0	Mm.14313	NM_013690	ENSMUSG00000006386	Tek	AA517024|Cd202b|Hyk|STK1|Tie-2|Tie2	TEK receptor tyrosine kinase	protein-coding	2.5	0.0	1.0	0.0	1.0	1.5
Merged-chr5-28161742-2	chr5	28161242	28162242	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3954.0	NM_010134	13799.0	Mm.4298	NM_010134	ENSMUSG00000039095	En2	BB131122|En-2	engrailed 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-109043457-1	chr12	109042957	109043957	+	555.0	f1_c57bl6.idr	intron (NM_001163175, intron 2 of 6)	intron (NM_001163175, intron 2 of 6)	24760.0	NM_001163175	380785.0	Mm.342085	NM_001163175	ENSMUSG00000040867	Begain	BM948371|Gm897	brain-enriched guanylate kinase-associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67245269-2	chr7	67244769	67245769	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 8 of 11)	intron (NM_001357324, intron 8 of 11)	22653.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93566002-2	chr2	93565502	93566502	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76432.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	0.0	3.0	0.5	0.0	2.5	0.0
Merged-chr1-181245746-1	chr1	181245246	181246246	+	555.0	f0_balb.idr	Intergenic	Intergenic	-33768.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-86601160-2	chr17	86600676	86601676	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 11 of 14)	intron (NM_011104, intron 11 of 14)	-152688.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr10-89630259-1	chr10	89629759	89630759	+	555.0	f1_c57bl6.idr	Intergenic	Intergenic	-9010.0	NM_182959	216227.0	Mm.233921	NM_182959	ENSMUSG00000019935	Slc17a8	BC042593|Vglut3	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8	protein-coding	3.0	4.5	0.0	3.5	5.0	0.0
Merged-chr2-173548788-2	chr2	173548276	173549276	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26184.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	0.0	0.0	1.0	0.0	0.0	2.5
Merged-chr6-54680844-1	chr6	54680344	54681344	+	555.0	f0_balb.idr	promoter-TSS (NM_001289740)	promoter-TSS (NM_001289740)	-780.0	NM_001289741	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	6.5	6.0	3.5	15.5	45.0	38.0
Merged-chr7-29230935-2	chr7	29230435	29231435	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033525, intron 1 of 2)	intron (NM_001033525, intron 1 of 2)	1587.0	NM_001033525	52150.0	Mm.24877	NM_001033525	ENSMUSG00000046410	Kcnk6	D7Ertd764e|Toss|Twik2	potassium inwardly-rectifying channel, subfamily K, member 6	protein-coding	7.0	22.0	6.5	8.5	25.0	6.5
Merged-chr18-37841959-2	chr18	37841459	37842459	+	555.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001174154)	TTS (NM_001174154)	12701.0	NR_105945	102465592.0		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-3745735-1	chr16	3745235	3746235	+	555.0	f0_balb.idr	intron (NM_148924, intron 1 of 5)	intron (NM_148924, intron 1 of 5)	1636.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79783563-2	chr10	79783063	79784063	+	555.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_031380)	TTS (NM_031380)	5422.0	NM_001042710	73106.0	Mm.491308	NM_001042710	ENSMUSG00000020323	Prss57	2900092M14Rik|GLGL782|NSP4|Prssl1|UNQ782	protease, serine 57	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90116305-1	chr9	90115805	90116805	+	555.0	f1_balb.idr	Intergenic	B1_Mus1|SINE|Alu	-1485.0	NM_024431	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	0.0	1.0	3.5	0.0	0.0	0.0
Merged-chr4-129517074-1	chr4	129516574	129517574	+	555.0	f1_balb.idr	intron (NM_008228, intron 12 of 13)	intron (NM_008228, intron 12 of 13)	3493.0	NM_010807	17357.0	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	1.0	0.0	7.5	6.0	5.5	4.0
Merged-chr1-65283021-2	chr1	65282521	65283521	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28236.0	NM_139270	213527.0	Mm.294225	NM_139270	ENSMUSG00000025946	Pth2r	Pthr2	parathyroid hormone 2 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-105124047-2	chr11	105123547	105124547	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2378.0	NM_172567	52686.0	Mm.270091	NM_172567	ENSMUSG00000020691	Mettl2	2810438F06Rik|AW493404|C130031G21Rik|D11Ertd768e|METL|PSENIP1	methyltransferase like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-65469744-2	chr7	65469244	65470244	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98500.0	NM_009386	21872.0	Mm.4342	NM_009386	ENSMUSG00000030516	Tjp1	ZO1	tight junction protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-82469758-2	chr12	82469238	82470238	+	555.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147187.0	NM_001310478	50779.0	Mm.126176	NM_015812	ENSMUSG00000021219	Rgs6	-	regulator of G-protein signaling 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-114651210-1	chr9	114650710	114651710	+	555.0	f0_c57.idr	Intergenic	Intergenic	-11010.0	NM_153585	78893.0	Mm.283708	NM_153585	ENSMUSG00000056167	Cnot10	2600001P13Rik	CCR4-NOT transcription complex, subunit 10	protein-coding	10.5	8.0	18.0	0.0	4.0	0.0
Merged-chr10-23181935-2	chr10	23181435	23182435	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010167, intron 3 of 18)	intron (NM_010167, intron 3 of 18)	167955.0	NM_001347372	14051.0	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126759498-1	chr8	126758998	126759998	+	555.0	f1_balb.idr	Intergenic	Intergenic	-89522.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	10.5	40.0	9.0	12.0	32.0	9.0
Merged-chr2-59355771-2	chr2	59355271	59356271	+	555.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026361)	TTS (NM_026361)	30911.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116626937-1	chr11	116626437	116627437	+	555.0	f0_c57.idr	promoter-TSS (NM_172572)	promoter-TSS (NM_172572)	82.0	NM_172572	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	12.0	28.5	28.0	19.5	38.0	26.0
Merged-chr15-31598307-2	chr15	31597807	31598807	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007637, intron 1 of 10)	intron (NM_007637, intron 1 of 10)	3232.0	NM_001348035	12465.0	Mm.282158	NM_007637	ENSMUSG00000022234	Cct5	CCT-epsilon|Ccte|TCP-1-epsilon|TCPE|mKIAA0098	chaperonin containing Tcp1, subunit 5 (epsilon)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80205767-1	chr17	80205267	80206267	+	555.0	f0_balb.idr	intron (NM_001360435, intron 2 of 6)	intron (NM_001360435, intron 2 of 6)	1538.0	NM_001195486	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129475499-1	chr6	129474999	129475999	+	555.0	f1_balb.idr	Intergenic	PB1D10|SINE|Alu	-2720.0	NR_132130	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.0	2.0	5.0	2.0	5.5	1.5
Merged-chr1-134106448-2	chr1	134105948	134106948	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4794.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41318542-1	chr19	41318042	41319042	+	555.0	f1_balb.idr	intron (NM_031376, intron 8 of 16)	intron (NM_031376, intron 8 of 16)	-54538.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	1.0	4.0	7.0	0.0	0.0	4.5
Merged-chr2-72287584-2	chr2	72287084	72288084	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 1 of 19)	intron (NM_023057, intron 1 of 19)	1883.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155482227-1	chr2	155481727	155482727	+	555.0	f1_balb.idr	Intergenic	MER91B|DNA|hAT-Tip100	32619.0	NM_144786	207182.0	Mm.41757	NM_144786	ENSMUSG00000027603	Ggt7	1110017C11Rik|6330563L03Rik|Ggtl3	gamma-glutamyltransferase 7	protein-coding	0.0	6.5	0.0	10.0	20.0	1.5
Merged-chr6-42932135-2	chr6	42931635	42932635	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	4902.0	NM_146295	258292.0	Mm.222992	NM_146295	ENSMUSG00000073111	Olfr446	MOR261-12	olfactory receptor 446	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-66078130-1	chr18	66077630	66078630	+	555.0	f1_c57bl6.idr	intron (NM_178793, intron 5 of 10)	intron (NM_178793, intron 5 of 10)	-75495.0	NM_001172062	70361.0	Mm.290857	NM_027400	ENSMUSG00000041891	Lman1	2610020P13Rik|AI326273|AU043785|C730041J05|ERGIC53|F5F8D|MCFD1|MR60|P58|gp58	lectin, mannose-binding, 1	protein-coding	0.0	0.0	0.0	0.0	5.5	3.5
Merged-chr8-117126653-2	chr8	117126153	117127153	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021486, intron 7 of 10)	MIR|SINE|MIR	30788.0	NM_001163028	63857.0	Mm.174133	NM_021486	ENSMUSG00000031845	Bco1	Bcdo|Bcdo1|Bcmo1|CMO1|Cmoi|beta-CD|betaCMOOX	beta-carotene oxygenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-41935640-1	chr9	41935140	41936140	+	555.0	f1_c57bl6.idr	Intergenic	Intergenic	141573.0	NM_001357261	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr14-18242508-2	chr14	18242008	18243008	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3402.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110186316-2	chr7	110185816	110186816	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-35387.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94458911-1	chr8	94458411	94459411	+	555.0	f1_balb.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-13852.0	NM_001033207	434341.0	Mm.334720	NM_001033207	ENSMUSG00000074151	Nlrc5	AI451557|AK220210|NOD27	NLR family, CARD domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120366266-2	chr8	120365766	120366766	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122600.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-94504905-1	chr10	94504405	94505405	+	555.0	f1_balb.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-9952.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-46728951-1	chr13	46728451	46729451	+	555.0	f1_c57bl6.idr	Intergenic	Intergenic	-1102.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	16.0	13.0	18.5	18.0	16.0	22.5
Merged-chr10-15973212-1	chr10	15972712	15973712	+	555.0	f1_c57bl6.idr	Intergenic	RMER17B2|LTR|ERVK	181435.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-37674875-1	chr15	37674375	37675375	+	555.0	f0_c57.idr	intron (NM_001359841, intron 1 of 7)	intron (NM_001359841, intron 1 of 7)	5699.0	NM_001359840	52589.0	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-16381227-1	chr9	16380727	16381727	+	555.0	f0_balb.idr	Intergenic	Intergenic	-2996.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-166169263-3	chr1	166168757	166169757	+	555.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39036.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-16378755-2	chr14	16378255	16379255	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009409, intron 1 of 35)	intron (NM_009409, intron 1 of 35)	13549.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-58441217-1	chr4	58440717	58441717	+	555.0	f0_balb.idr	promoter-TSS (NR_037278)	promoter-TSS (NR_037278)	-119.0	NR_037278	100526502.0		NR_037278	ENSMUSG00000093293	Mir3095	mir-3095|mmu-mir-3095	microRNA 3095	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-42227470-1	chr6	42226970	42227970	+	555.0	f0_balb.idr	Intergenic	Intergenic	12142.0	NM_001001453	387515.0	Mm.377922	NM_001001453	ENSMUSG00000051917	Tas2r144	Tas2r40|Tas2r44|mt2r33	taste receptor, type 2, member 144	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-57761941-1	chr10	57761441	57762441	+	555.0	f0_balb.idr	Intergenic	Intergenic	-22982.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-24185754-2	chr18	24185254	24186254	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-19590.0	NM_013814	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110813683-2	chr12	110813183	110814183	+	555.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011973, exon 7 of 12)	exon (NM_011973, exon 7 of 12)	27256.0	NM_011973	26448.0	Mm.140948	NM_011973	ENSMUSG00000056458	Mok	RAGE1|Rage|Stk30	MOK protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25012611-1	chr8	25012111	25013111	+	555.0	f0_balb.idr	intron (NM_001270996, intron 1 of 21)	intron (NM_001270996, intron 1 of 21)	4311.0	NM_001270996	11502.0	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	8.0	56.0	20.0	8.0	51.5	25.5
Merged-chr17-83729408-2	chr17	83728908	83729908	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 3 of 16)	intron (NM_054082, intron 3 of 16)	23245.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59187050-1	chr4	59186550	59187550	+	555.0	f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	-2500.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	0.0	0.0	0.0	6.0	3.5	4.0
Merged-chr11-75052599-2	chr11	75052099	75053099	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 12 of 18)	intron (NM_001002764, intron 12 of 18)	13392.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34190859-2	chr5	34190359	34191359	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3149.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-80892713-2	chr9	80892213	80893213	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-427275.0	NM_022016	63859.0	Mm.422780	NM_022016	ENSMUSG00000032343	Impg1	A930015H12Rik|IMP150|SPACR	interphotoreceptor matrix proteoglycan 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60255676-1	chr2	60255176	60256176	+	555.0	f1_c57bl6.idr	intron (NM_001290660, intron 4 of 5)	RMER13B|LTR|ERVK	28808.0	NM_025422	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158613389-1	chr2	158612889	158613889	+	555.0	f1_c57bl6.idr	intron (NM_009508, intron 1 of 1)	intron (NM_009508, intron 1 of 1)	2631.0	NM_009508	22348.0	Mm.143404	NM_009508	ENSMUSG00000037771	Slc32a1	R75019|VGAT|Viaat	solute carrier family 32 (GABA vesicular transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59734151-2	chr15	59733651	59734651	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60808.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-24428703-1	chr17	24428203	24429203	+	555.0	f1_balb.idr	intron (NM_010023, intron 2 of 6)	B1_Mus1|SINE|Alu	2020.0	NM_010023	13177.0	Mm.291743	NM_010023	ENSMUSG00000024132	Eci1	Dci|eci	enoyl-Coenzyme A delta isomerase 1	protein-coding	7.5	0.0	2.5	6.5	5.5	0.0
Merged-chr1-120071560-2	chr1	120071060	120072060	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019432, intron 1 of 1)	intron (NM_019432, intron 1 of 1)	2220.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	5.5	6.0	9.0	1.0	1.5	4.5
Merged-chr2-84298443-2	chr2	84297943	84298943	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	126823.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0.0	2.5	0.5	0.0	0.0	0.0
Merged-chr3-130901071-2	chr3	130900571	130901571	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-170673.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-32376590-2	chr4	32376090	32377090	+	554.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40845.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172342014-2	chr1	172341542	172342542	+	554.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	832.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	12.5	51.5	33.0	38.0	58.5	79.0
Merged-chr16-87696996-2	chr16	87696496	87697496	+	554.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-1958.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.0	0.5	0.0	0.0	0.5	0.0
Merged-chr15-38628778-2	chr15	38628241	38629241	+	554.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C-int|LTR|ERVK	-33163.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88490443-2	chr3	88489943	88490943	+	554.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002011, intron 1 of 11)	intron (NM_001002011, intron 1 of 11)	2869.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46056299-2	chr11	46055799	46056799	+	554.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_009616, intron 1 of 22)	CpG	315.0	NM_001291891	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-84442701-3	chr14	84442216	84443216	+	554.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013753)	promoter-TSS (NM_001013753)	-847.0	NM_001013753	219228.0	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-104985891-3	chr13	104985393	104986393	+	554.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029879, intron 2 of 5)	intron (NM_029879, intron 2 of 5)	69037.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-116990235-2	chr8	116989735	116990735	+	554.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026572, intron 1 of 4)	intron (NM_026572, intron 1 of 4)	3214.0	NM_026572	68133.0	Mm.258462	NM_026572	ENSMUSG00000034424	Gcsh	1100001L02Rik|5730591C18Rik	glycine cleavage system protein H (aminomethyl carrier)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61694074-2	chr10	61693574	61694574	+	554.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001358488)	TTS (NM_001358488)	-1440.0	NM_001272090	71767.0	Mm.71514	NM_027912	ENSMUSG00000020087	Tysnd1	1300019N10Rik	trypsin domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119538186-2	chr4	119537686	119538686	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004178, intron 1 of 3)	intron (NM_001004178, intron 1 of 3)	583.0	NM_001004178	433752.0	Mm.425205	NM_001004178	ENSMUSG00000087385	Frg2f1	AA415398	FSHD region gene 2 family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38440588-2	chr18	38440088	38441088	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	21681.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-56598735-2	chr9	56598235	56599235	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	36913.0	NM_001311076	235402.0	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79157891-2	chr11	79157391	79158391	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11418.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-45496719-2	chr5	45496219	45497219	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024434, intron 2 of 12)	intron (NM_024434, intron 2 of 12)	3345.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7714867-2	chr9	7714367	7715367	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19236.0	NR_126562	102722.0	Mm.334941	NR_126562	ENSMUSG00000086381	AV064505	-	expressed sequence AV064505	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59502315-2	chr11	59501815	59502815	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291014, intron 5 of 9)	intron (NM_001291014, intron 5 of 9)	-3338.0	NR_135273	74476.0	Mm.440257	NR_015585	ENSMUSG00000072893	4933439C10Rik	2610028M21Rik	RIKEN cDNA 4933439C10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62088700-2	chr18	62088200	62089200	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91281.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0.0	0.0	5.0	0.0	0.0	5.0
Merged-chr12-4213058-2	chr12	4212558	4213558	+	554.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001361641)	TTS (NM_001361641)	20907.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91458061-2	chr2	91457561	91458561	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 1 of 37)	CpG	530.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-5026681-2	chr3	5026181	5027181	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-63595.0	NR_153343	100503882.0	Mm.139814	NR_153343	ENSMUSG00000096922	Gm17308	-	predicted gene, 17308	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58246564-2	chr15	58246064	58247064	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31672.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110162771-2	chr7	110162271	110163271	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40712.0	NM_009516	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55597870-2	chr4	55597370	55598370	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65395.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	6.5	6.0	0.0	5.0	4.0	0.0
Merged-chr18-38944277-2	chr18	38943777	38944777	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033789, intron 4 of 4)	intron (NM_001033789, intron 4 of 4)	-25578.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99458999-2	chr5	99458499	99459499	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-206072.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137860867-2	chr4	137860367	137861367	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1370.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81128306-2	chr13	81127806	81128806	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	164232.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137626655-2	chr5	137626155	137627155	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-1577.0	NM_027708	71176.0	Mm.474695	NM_027708	ENSMUSG00000089984	Fbxo24	4933422D21Rik|Fbx24	F-box protein 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-103363382-2	chr9	103362900	103363900	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175833, intron 2 of 4)	intron (NM_175833, intron 2 of 4)	1579.0	NM_001134427	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	4.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3646829-2	chr7	3646329	3647329	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146176, intron 1 of 17)	intron (NM_146176, intron 1 of 17)	1560.0	NM_146176	232791.0	Mm.358731	NM_146176	ENSMUSG00000035632	Cnot3	A930039N10Rik	CCR4-NOT transcription complex, subunit 3	protein-coding	6.0	2.5	2.0	1.0	0.0	5.0
Merged-chr17-26252033-2	chr17	26251533	26252533	+	554.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025881)	promoter-TSS (NM_025881)	-877.0	NM_025881	66978.0	Mm.440216	NM_025881	ENSMUSG00000024188	Luc7l	1810045C04Rik|2410018D03Rik	Luc7-like	protein-coding	6.0	59.0	35.0	5.5	73.0	41.0
Merged-chr11-69880353-2	chr11	69879853	69880853	+	554.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_153143, exon 1 of 1)	5' UTR (NM_153143, exon 1 of 1)	632.0	NM_153143	216858.0	Mm.239498	NM_153143	ENSMUSG00000046731	Kctd11	AF465352|Ren	potassium channel tetramerisation domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-149988037-2	chr3	149987537	149988537	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	713300.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.0	0.0	0.0	2.0	0.0	3.5
Merged-chr10-125084698-2	chr10	125084198	125085198	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	224118.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122268981-2	chr8	122268481	122269481	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13160.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-71681976-2	chr17	71681476	71682476	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177087, intron 1 of 19)	intron (NM_177087, intron 1 of 19)	8715.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125193181-2	chr6	125192640	125193640	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025595, intron 2 of 2)	intron (NM_025595, intron 2 of 2)	940.0	NM_025595	66493.0	Mm.138749	NM_025595	ENSMUSG00000030335	Mrpl51	2610511M02Rik|CDA09|HSPC241|Mrp64	mitochondrial ribosomal protein L51	protein-coding	10.0	21.5	21.5	8.0	24.5	25.0
Merged-chr11-79031833-2	chr11	79031333	79032333	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045873, intron 5 of 5)	MIRc|SINE|MIR	8236.0	NR_045873	790910.0	Mm.440410	NR_045873		Gm11201	-	predicted gene 11201	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39364313-1	chr18	39363813	39364813	+	554.5	f1_balb.idr	intron (NM_001361073, intron 21 of 21)	MIR|SINE|MIR	122932.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	1.0	0.0	1.0	4.0	7.0	3.0
Merged-chr15-83043278-2	chr15	83042778	83043778	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9881.0	NM_001271411	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-123031496-2	chr7	123030996	123031996	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60932.0	NM_175023	19647.0	Mm.4480	NM_011247	ENSMUSG00000030779	Rbbp6	4933422O15Rik|AI316869|BB233631|C030034J04Rik|C77662|P2P-R|PACT	retinoblastoma binding protein 6, ubiquitin ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44928181-2	chr7	44927681	44928681	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077264, intron 1 of 22)	intron (NM_001077264, intron 1 of 22)	1309.0	NM_007458	11771.0	Mm.6877	NM_007458	ENSMUSG00000060279	Ap2a1	Adtaa	adaptor-related protein complex 2, alpha 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-107353303-2	chr1	107352803	107353803	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC2|LINE|L1	-9011.0	NM_025867	66957.0	Mm.12638	NM_025867	ENSMUSG00000026327	Serpinb11	2310046M08Rik|AU015399	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 11	protein-coding	0.0	5.0	1.0	0.0	3.5	1.5
Merged-chr8-4371786-2	chr8	4371286	4372286	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22198.0	NM_009138	20300.0	Mm.7275	NM_009138	ENSMUSG00000023235	Ccl25	A130072A22Rik|AI852536|CKb15|Scya25|TECK	chemokine (C-C motif) ligand 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117158017-2	chr5	117157517	117158517	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	MTD|LTR|ERVL-MaLR	24429.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	6.0	12.0	5.0	2.5	19.5	1.5
Merged-chr11-87811693-2	chr11	87811193	87812193	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080420, intron 9 of 12)	intron (NM_080420, intron 9 of 12)	14421.0	NM_080420	76113.0	Mm.41236	NM_080420	ENSMUSG00000009356	Lpo	5830499B15Rik	lactoperoxidase	protein-coding	4.5	1.0	1.5	0.0	0.0	1.0
Merged-chr2-4516271-2	chr2	4515771	4516771	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 7 of 23)	B4A|SINE|B4	-43483.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69065455-2	chr3	69064955	69065955	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20713.0	NM_025863	66949.0	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	0.0	0.5	1.0	0.0	0.5	1.0
Merged-chr13-101751625-2	chr13	101751125	101752125	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	16592.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59527363-2	chr15	59526863	59527863	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-121291.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	4.5	0.0	0.0	2.5	0.0
Merged-chr18-5073764-2	chr18	5073264	5074264	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347449, intron 9 of 30)	intron (NM_001347449, intron 9 of 30)	27175.0	NM_001347449	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-60279819-2	chr2	60279319	60280319	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025422, intron 1 of 4)	MLT2B1|LTR|ERVL	4665.0	NM_025422	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33749602-2	chr17	33749102	33750102	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008997, intron 2 of 4)	intron (NM_008997, intron 2 of 4)	10884.0	NM_008997	19326.0	Mm.387587	NM_008997	ENSMUSG00000077450	Rab11b	A730055L17Rik	RAB11B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-113987005-2	chr5	113986505	113987505	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198109, intron 2 of 14)	intron (NM_198109, intron 2 of 14)	6752.0	NM_198109	231637.0	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot protein phosphatase 1	protein-coding	7.5	1.5	0.5	6.0	2.0	4.5
Merged-chr16-4791137-2	chr16	4790637	4791637	+	554.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358082)	promoter-TSS (NM_001358082)	-845.0	NM_001358082	66626.0	Mm.157648	NM_025670	ENSMUSG00000004071	Cdip1	2700048O17Rik|5730403B10Rik|AU018521|AW742692|CDIP	cell death inducing Trp53 target 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154299672-2	chr4	154299172	154300172	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112744, intron 1 of 14)	intron (NM_001112744, intron 1 of 14)	223.0	NM_001112744	230972.0	Mm.38481	NM_001112744	ENSMUSG00000029032	Arhgef16	-	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-107955069-2	chr14	107954569	107955569	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	959170.0	NM_199065	76965.0	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100472404-2	chr11	100471904	100472904	+	554.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172565, exon 1 of 2)	exon (NM_172565, exon 1 of 2)	378.0	NR_155072	217194.0	Mm.183320	NM_172565	ENSMUSG00000048732	Klhl11	BC011167	kelch-like 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166182058-2	chr2	166181558	166182558	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26375.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62137540-2	chr15	62137040	62138040	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 2 of 6)	intron (NR_132746, intron 2 of 6)	81911.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-131495976-2	chr3	131495476	131496476	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-68792.0	NM_001289479	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80577434-2	chr17	80576934	80577934	+	554.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360143)	promoter-TSS (NM_001360143)	50.0	NM_001360143	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-94621906-1	chr3	94621406	94622406	+	554.5	f0_balb.idr	intron (NM_001293728, intron 8 of 11)	intron (NM_001293728, intron 8 of 11)	36966.0	NM_001293728	22156.0	Mm.10214	NM_011656	ENSMUSG00000005968	Tuft1	-	tuftelin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143038368-2	chr5	143037868	143038868	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	B1_Mur3|SINE|Alu	74652.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6389570-2	chr4	6389070	6390070	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 6 of 8)	intron (NM_001098227, intron 6 of 8)	23890.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-41352459-2	chr12	41351959	41352959	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	133598.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47928679-2	chr19	47928179	47929179	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-9033.0	NM_001163267	381229.0	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45017108-2	chr4	45016608	45017608	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1501.0	NM_022811	64424.0	Mm.282932	NM_022811	ENSMUSG00000028318	Polr1e	53kDa|AU042259|D030019D19Rik|Paf53|Praf1	polymerase (RNA) I polypeptide E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25620879-2	chr2	25620379	25621379	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040130, intron 4 of 4)	intron (NM_001040130, intron 4 of 4)	1123.0	NM_001040130	51875.0	Mm.271147	NM_001040130	ENSMUSG00000026939	Tmem141	1110065P14Rik|AI663999|D2Ertd217e	transmembrane protein 141	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-125571544-2	chr2	125571044	125572044	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081091, intron 23 of 27)	intron (NM_001081091, intron 23 of 27)	53569.0	NM_001081091	99100.0	Mm.330545	NM_001081091	ENSMUSG00000068394	Cep152	AI851464|mKIAA0912	centrosomal protein 152	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-149409972-2	chr6	149409472	149410472	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112796, intron 1 of 7)	intron (NM_001112796, intron 1 of 7)	988.0	NM_009753	12121.0	Mm.177181	NM_009753	ENSMUSG00000003452	Bicd1	B830009D06Rik|bic-D 1	BICD cargo adaptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-140714123-2	chr6	140713623	140714623	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87238.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158148201-2	chr2	158147701	158148701	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1809.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-33996045-2	chr5	33995545	33996545	+	554.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001985)	promoter-TSS (NM_001001985)	61.0	NM_001001985	269642.0	Mm.274610	NM_001001985	ENSMUSG00000048142	Nat8l	1110038O08Rik|Shati	N-acetyltransferase 8-like	protein-coding	1.5	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114238374-2	chr11	114237874	114238874	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	40116.0	NR_045930	73536.0	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57330666-2	chr17	57330166	57331166	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-28020.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17596485-2	chr6	17595985	17596985	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40525.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-33508899-2	chr4	33508399	33509399	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70818.0	NR_106198	102465904.0		NR_106198	ENSMUSG00000098310	Mir8118	Gm27954|mmu-mir-8118	microRNA 8118	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166594234-2	chr2	166593734	166594734	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 15 of 39)	B4A|SINE|B4	29712.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25822624-2	chr7	25822124	25823124	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6094.0	NM_028775	74134.0	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	5.5	0.0	2.0	0.0	0.0	4.5
Merged-chr9-66898038-2	chr9	66897538	66898538	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	21667.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122478747-2	chr8	122478247	122479247	+	554.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_153775, exon 6 of 15)	exon (NM_153775, exon 6 of 15)	2604.0	NR_152823	66965.0	Mm.482288	NM_153775	ENSMUSG00000049482	Ctu2	2310061F22Rik|C16orf84|Ncs2	cytosolic thiouridylase subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-17212556-2	chr4	17212056	17213056	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-640337.0	NR_135158	17389.0	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT-MMP 3|MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr2-31291600-2	chr2	31291100	31292100	+	554.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019681, intron 7 of 7)	intron (NM_019681, intron 7 of 7)	45677.0	NM_019681	14299.0	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54064634-3	chr11	54064148	54065148	+	554.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019417, intron 1 of 6)	intron (NM_019417, intron 1 of 6)	4369.0	NM_019417	30794.0	Mm.21830	NM_019417	ENSMUSG00000020388	Pdlim4	Ril	PDZ and LIM domain 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61149804-2	chr10	61149304	61150304	+	554.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2120.0	NM_001316674	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80351970-2	chr10	80351512	80352512	+	554.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-3564.0	NR_104340	66548.0	Mm.71891	NM_025629	ENSMUSG00000043822	Adamtsl5	2010109H09Rik|Thsd6	ADAMTS-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44634283-2	chr10	44633783	44634783	+	554.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-175535.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79748696-2	chr10	79748196	79749196	+	554.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-2115.0	NM_172551	216151.0	Mm.39001	NM_172551	ENSMUSG00000020329	Polrmt	1110018N15Rik|4932416K13	polymerase (RNA) mitochondrial (DNA directed)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43129529-1	chr5	43129029	43130029	+	554.0	f1_balb.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-103934.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0.0	0.0	0.0	2.5	0.0	0.0
Merged-chr14-20660318-1	chr14	20659818	20660818	+	554.0	f1_c57bl6.idr	exon (NM_001310431, exon 4 of 4)	exon (NM_001310431, exon 4 of 4)	-3778.0	NM_021508	59011.0	Mm.439911	NM_021508	ENSMUSG00000068697	Myoz1	2310001N11Rik|AV090278|FATZ|Myoz	myozenin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-25888661-2	chr1	25888161	25889161	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-58954.0	NM_175642	210933.0	Mm.336569	NM_175642	ENSMUSG00000033569	Adgrb3	A830096D10Rik|Bai3	adhesion G protein-coupled receptor B3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-72852590-2	chr16	72852090	72853090	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019413, intron 2 of 28)	intron (NM_019413, intron 2 of 28)	189441.0	NM_019413	19876.0	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4365510-2	chr18	4365010	4366010	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040328, intron 2 of 3)	intron (NR_040328, intron 2 of 3)	-10082.0	NM_001361008	67440.0	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117395284-2	chr11	117394784	117395784	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19105.0	NR_132097	105827746.0	Mm.388009	NR_132097	ENSMUSG00000086588	Gm11729	-	predicted gene 11729	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-54475063-1	chr1	54474563	54475563	+	554.0	f1_c57bl6.idr	3' UTR (NM_001163314, exon 27 of 27)	3' UTR (NM_001163314, exon 27 of 27)	-36037.0	NM_001033194	98488.0	Mm.25856	NM_001033194	ENSMUSG00000041303	Gtf3c3	TF3C-gamma|TFIIIC102	general transcription factor IIIC, polypeptide 3	protein-coding	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr9-40763814-2	chr9	40763304	40764304	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 2 of 6)	MER31A|LTR|ERV1	-37469.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	4.0	17.0	17.5	6.5	43.5	23.0
Merged-chr10-98759193-1	chr10	98758693	98759693	+	554.0	f0_balb.idr	Intergenic	Intergenic	-155449.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152437787-2	chr1	152437287	152438287	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177756, intron 1 of 11)	RLTR10A|LTR|ERVK	37920.0	NM_177756	269132.0	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110480179-1	chr11	110479679	110480679	+	554.0	f1_balb.idr	intron (NM_001356346, intron 1 of 11)	intron (NM_001356346, intron 1 of 11)	839.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	15.5	15.0	13.5	5.0	10.5	7.5
Merged-chr8-95053959-1	chr8	95053459	95054459	+	554.0	f0_balb.idr	Intergenic	RMER19B|LTR|ERVK	-1144.0	NM_001042715	330830.0	Mm.277112	NM_001042715	ENSMUSG00000031786	Drc7	Ccdc135|Gm770|SRG-L|SRG-S	dynein regulatory complex subunit 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150257939-1	chr4	150257439	150258439	+	554.0	f1_balb.idr	Intergenic	Intergenic	20615.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	4.0	12.5	3.0	1.5	2.0	1.0
Merged-chr2-73062490-2	chr2	73061990	73062990	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-82044.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99590059-1	chr15	99589559	99590559	+	554.0	f1_c57bl6.idr	promoter-TSS (NM_009701)	promoter-TSS (NM_009701)	-969.0	NM_009701	11830.0	Mm.45580	NM_009701	ENSMUSG00000044217	Aqp5	-	aquaporin 5	protein-coding	0.0	0.0	2.5	1.5	0.0	1.0
Merged-chr2-57231933-2	chr2	57231433	57232433	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6D|LTR|ERVK	-5745.0	NM_001145820	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-115815457-2	chr14	115814957	115815957	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175500, intron 7 of 7)	Lx3_Mus|LINE|L1	-405905.0	NR_045761	75088.0	Mm.444706	NR_045761	ENSMUSG00000093551	4930505G20Rik	-	RIKEN cDNA 4930505G20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-9890451-2	chr2	9889951	9890951	+	554.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040511)	promoter-TSS (NR_040511)	-911.0	NR_040511	77682.0	Mm.488621	NR_040511	ENSMUSG00000079602	9230102O04Rik	-	RIKEN cDNA 9230102O04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78016512-2	chr10	78016012	78017012	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6705.0	NM_001358793	18641.0	Mm.269649	NM_008826	ENSMUSG00000020277	Pfkl	AA407869|ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver, B-type	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-12370747-1	chr3	12370247	12371247	+	554.0	f1_c57bl6.idr	Intergenic	ETnERV3-int|LTR|ERVK	-526388.0	NR_040751	100038545.0	Mm.388494	NR_040751	ENSMUSG00000104015	Gm10745	-	predicted gene 10745	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16667852-1	chr1	16667352	16668352	+	554.0	f0_c57.idr	intron (NM_027415, intron 2 of 2)	Lx9|LINE|L1	2661.0	NM_026392	70397.0	Mm.194225	NM_026392	ENSMUSG00000025940	Tmem70	1110020A09Rik|2210416J16Rik	transmembrane protein 70	protein-coding	15.5	29.5	25.0	35.0	20.5	13.0
Merged-chr16-16871622-2	chr16	16871122	16872122	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011624, intron 1 of 17)	intron (NM_011624, intron 1 of 17)	886.0	NM_011624	21976.0	Mm.326089	NM_011624	ENSMUSG00000022779	Top3b	-	topoisomerase (DNA) III beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-87474282-1	chr12	87473782	87474782	+	554.0	f1_balb.idr	Intergenic	B3|SINE|B2	-1983.0	NM_025507	66354.0	Mm.271174	NM_025507	ENSMUSG00000021039	Snw1	2310008B08Rik|AW048543|NCoA-62|SKIP|Skiip	SNW domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84829453-1	chr2	84828953	84829953	+	554.0	f1_balb.idr	intron (NM_013899, intron 2 of 2)	MIR|SINE|MIR	2432.0	NM_013899	30059.0	Mm.21826	NM_013899	ENSMUSG00000027076	Timm10	Tim13|Timm13a	translocase of inner mitochondrial membrane 10	protein-coding	0.0	4.5	1.0	0.0	1.0	5.5
Merged-chr2-129634965-1	chr2	129634465	129635465	+	554.0	f1_c57bl6.idr	Intergenic	Intergenic	39503.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	5.5	7.5	6.0	5.0	10.5	0.5
Merged-chr11-30289741-1	chr11	30289241	30290241	+	554.0	f1_balb.idr	Intergenic	Intergenic	-69969.0	NM_175836	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.0	0.0	0.0	3.0	0.0	0.5
Merged-chr7-27593227-2	chr7	27592727	27593727	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110208, intron 1 of 13)	intron (NM_001110208, intron 1 of 13)	1675.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	0.0	0.0	5.0	0.0	0.0	0.0
Merged-chr19-46758717-1	chr19	46758217	46759217	+	554.0	f1_balb.idr	Intergenic	Intergenic	-2892.0	NM_033569	94219.0	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	4.0	3.0	5.5	7.5	3.0	5.5
Merged-chr15-50345814-2	chr15	50345314	50346314	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	543235.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-58556967-1	chr18	58556467	58557467	+	554.0	f1_c57bl6.idr	intron (NM_001081072, intron 1 of 9)	intron (NM_001081072, intron 1 of 9)	727.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	4.5	3.0	4.5	6.0	12.0	8.0
Merged-chr9-52095883-1	chr9	52095383	52096383	+	554.0	f0_balb.idr	Intergenic	Intergenic	-19740.0	NR_105750	102465150.0		NR_105750	ENSMUSG00000099311	Mir6244	Gm27368|mmu-mir-6244	microRNA 6244	ncRNA	3.5	4.5	5.5	0.0	0.0	2.0
Merged-chr2-160317978-1	chr2	160317478	160318478	+	554.0	f0_balb.idr	intron (NM_001033411, intron 2 of 2)	intron (NM_001033411, intron 2 of 2)	9516.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-92908011-1	chr1	92907511	92908511	+	554.0	f1_balb.idr	TTS (NR_138577)	TTS (NR_138577)	1022.0	NM_175118	67446.0	Mm.46179	NM_175118	ENSMUSG00000047067	Dusp28	0710001B24Rik|AV005521	dual specificity phosphatase 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17728691-1	chr6	17728191	17729191	+	554.0	f0_balb.idr	intron (NM_001289624, intron 1 of 15)	B3A|SINE|B2	-14901.0	NM_001289627	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	7.5	7.0	4.5	2.5	4.5	9.5
Merged-chr7-101083654-2	chr7	101083154	101084154	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	-25121.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-49545341-2	chr18	49544841	49545841	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	22052.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11335478-1	chr8	11334978	11335978	+	554.0	f0_balb.idr	intron (NM_009932, intron 3 of 47)	intron (NM_009932, intron 3 of 47)	-22652.0	NM_009931	12826.0	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75355845-2	chr18	75355345	75356345	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11243.0	NR_155535	102636262.0	Mm.421168	NR_155535		Gm20544	-	predicted gene 20544	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-12744976-1	chr2	12744476	12745476	+	554.0	f1_balb.idr	Intergenic	Intergenic	-179065.0	NM_008961	19212.0	Mm.229322	NM_008961	ENSMUSG00000026730	Pter	AI790318|Mpr56-1	phosphotriesterase related	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-40935864-2	chr14	40935380	40936380	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	12329.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53902179-2	chr19	53901679	53902679	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011050, intron 1 of 11)	intron (NM_011050, intron 1 of 11)	-1172.0	NM_001168492	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	3.0	10.5	12.5	5.5	9.0	8.5
Merged-chr10-39246598-1	chr10	39246098	39247098	+	554.0	f0_balb.idr	Intergenic	Intergenic	-82804.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71523565-1	chr8	71523065	71524065	+	554.0	f1_balb.idr	Intergenic	Intergenic	-11796.0	NM_032398	84094.0	Mm.260768	NM_032398	ENSMUSG00000034845	Plvap	MECA32|Pv1	plasmalemma vesicle associated protein	protein-coding	2.5	0.0	0.0	0.0	0.0	2.0
Merged-chr7-4355568-1	chr7	4355068	4356068	+	554.0	f1_balb.idr	Intergenic	Intergenic	17844.0	NM_010746	17086.0	Mm.240231	NM_010746	ENSMUSG00000062524	Ncr1	Ly94|NKp46	natural cytotoxicity triggering receptor 1	protein-coding	4.5	1.0	4.0	0.0	0.0	1.0
Merged-chr9-85396698-2	chr9	85396198	85397198	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69548.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0.0	0.0	1.0	8.0	17.0	6.0
Merged-chr6-82739580-1	chr6	82739080	82740080	+	554.0	f1_c57bl6.idr	exon (NM_013820, exon 8 of 18)	exon (NM_013820, exon 8 of 18)	34874.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	1.5	0.5	0.0	11.0	1.0	0.5
Merged-chr14-30095606-2	chr14	30095101	30096101	+	554.0	f0_c57.idr|f1_balb.idr	intron (NM_001083616, intron 28 of 46)	intron (NM_001083616, intron 28 of 46)	72968.0	NM_175343	218865.0	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	1.5	13.5	2.0	3.0	1.5	3.5
Merged-chr2-25053490-2	chr2	25052990	25053990	+	554.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020276)	promoter-TSS (NM_020276)	-889.0	NM_001177654	56876.0	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-5564083-2	chr3	5563583	5564583	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001267715, intron 1 of 3)	L1_Mus2|LINE|L1	12165.0	NM_001163301	19302.0	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	0.0	0.0	0.0	11.5	9.5	10.5
Merged-chr4-21849570-1	chr4	21849070	21850070	+	554.0	f1_balb.idr	intron (NM_025669, intron 1 of 11)	L1MC3|LINE|L1	-1122.0	NR_028384	67735.0	Mm.391650	NR_028384		4930528A17Rik	-	RIKEN cDNA 4930528A17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102085442-1	chr5	102084942	102085942	+	554.0	f1_balb.idr	Intergenic	MT2A|LTR|ERVL	-15521.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-62017961-1	chr12	62017461	62018461	+	554.0	f1_balb.idr	Intergenic	RLTR45|LTR|ERVK	494794.0	NM_001310586	238205.0	Mm.28802	NM_178714	ENSMUSG00000035653	Lrfn5	AI427653|AI604817|C130061B21|mKIAA4208	leucine rich repeat and fibronectin type III domain containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-74166210-1	chr16	74165710	74166710	+	554.0	f1_balb.idr	intron (NM_001358493, intron 2 of 28)	intron (NM_001358493, intron 2 of 28)	175857.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.5	4.0	1.0	0.0	0.5	0.0
Merged-chr6-134981059-1	chr6	134980559	134981559	+	554.0	f1_c57bl6.idr	promoter-TSS (NM_001109914)	promoter-TSS (NM_001109914)	-942.0	NM_001109914	381823.0	Mm.296104	NM_001109914	ENSMUSG00000090698	Apold1	Gm1075	apolipoprotein L domain containing 1	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr6-140764951-2	chr6	140764451	140765451	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	138066.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66386591-1	chr7	66386091	66387091	+	554.0	f1_balb.idr	intron (NM_146191, intron 1 of 33)	Lx7|LINE|L1	1750.0	NM_146191	233328.0	Mm.33284	NM_146191	ENSMUSG00000015133	Lrrk1	AW319595|C230002E15Rik|D130026O16Rik|mKIAA1790	leucine-rich repeat kinase 1	protein-coding	9.0	52.0	34.5	17.5	12.0	11.5
Merged-chr15-12324552-2	chr15	12324052	12325052	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025673, intron 1 of 3)	RMER10A|LTR|ERVL	3056.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125514207-1	chr8	125513707	125514707	+	554.0	f0_c57.idr	intron (NM_001357372, intron 2 of 21)	intron (NM_001357372, intron 2 of 21)	-21374.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	35.0	68.0	21.0	34.5	13.0	9.0
Merged-chr5-87059429-2	chr5	87058929	87059929	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C2|LTR|ERVK	33126.0	NM_001029867	231396.0	Mm.439851	NM_001029867	ENSMUSG00000070704	Ugt2b36	-	UDP glucuronosyltransferase 2 family, polypeptide B36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84755026-2	chr12	84754526	84755526	+	554.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023409, exon 4 of 4)	3' UTR (NM_023409, exon 4 of 4)	18086.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-30673876-1	chr10	30673376	30674376	+	554.0	f0_balb.idr	intron (NM_001358842, intron 9 of 14)	MER90|LTR|ERV1	-18009.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-97776432-2	chr3	97775932	97776932	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 8 of 46)	intron (NM_001039376, intron 8 of 46)	-8418.0	NR_110360	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24973454-2	chr2	24972954	24973954	+	554.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001031808, exon 2 of 2)	3' UTR (NM_001031808, exon 2 of 2)	1644.0	NM_001031808	107733.0	Mm.23010	NM_001031808	ENSMUSG00000036850	Mrpl41	MRP-L27|Rpml27	mitochondrial ribosomal protein L41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59175003-1	chr11	59174503	59175503	+	554.0	f1_balb.idr	TTS (NM_080454)	TTS (NM_080454)	7823.0	NM_175452	118454.0	Mm.40016	NM_080454	ENSMUSG00000043448	Gjc2	B230382L12Rik|Cx47|Gja12	gap junction protein, gamma 2	protein-coding	0.0	0.0	2.5	1.0	4.5	5.5
Merged-chr13-43532227-1	chr13	43531727	43532727	+	554.0	f1_c57bl6.idr	Intergenic	Intergenic	27964.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	1.0	4.5	7.0	5.5	17.0	7.0
Merged-chr7-99054016-2	chr7	99053516	99054516	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 6 of 14)	RMER2|LTR|ERV1	87128.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	6.0	10.0	2.0	3.0	7.5	4.0
Merged-chr5-136253388-2	chr5	136252888	136253888	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291238, intron 18 of 22)	B4A|SINE|B4	-8448.0	NM_018825	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124835386-1	chr6	124834886	124835886	+	554.0	f0_balb.idr	intron (NM_013530, intron 9 of 9)	intron (NM_013530, intron 9 of 9)	4889.0	NM_013530	14695.0	Mm.68889	NM_013530	ENSMUSG00000023439	Gnb3	Gnb-3	guanine nucleotide binding protein (G protein), beta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142382336-1	chr7	142381836	142382836	+	554.0	f1_balb.idr	intron (NM_009983, intron 4 of 8)	intron (NM_009983, intron 4 of 8)	5534.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	7.0	8.0	9.0	0.0	4.0	1.5
Merged-chr12-91633530-1	chr12	91633030	91634030	+	554.0	f1_c57bl6.idr	3' UTR (NM_175367, exon 7 of 7)	3' UTR (NM_175367, exon 7 of 7)	-43043.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25656575-2	chr14	25656075	25657075	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 20 of 23)	intron (NM_183208, intron 20 of 23)	-37595.0	NM_134084	105675.0	Mm.41656	NM_134084	ENSMUSG00000021868	Ppif	AW457192|CyP-D|CyP-F|CypD|PPIase	peptidylprolyl isomerase F (cyclophilin F)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32001853-1	chr12	32001353	32002353	+	554.0	f0_balb.idr	intron (NM_011158, intron 2 of 10)	intron (NM_011158, intron 2 of 10)	-51608.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	5.0	0.5	4.5	0.0	2.0	4.0
Merged-chr15-79391722-1	chr15	79391222	79392222	+	554.0	f1_c57bl6.idr	intron (NM_172608, intron 1 of 8)	intron (NM_172608, intron 1 of 8)	11197.0	NM_001253817	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	4.5	7.5	8.5	3.0	0.0	5.0
Merged-chr9-36044471-1	chr9	36043971	36044971	+	554.0	f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	84308.0	NM_001167587	546123.0	Mm.445255	NM_001167587	ENSMUSG00000091411	Gm5916	EG546123	predicted gene 5916	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34561727-1	chr18	34561227	34562227	+	554.0	f1_c57bl6.idr	TTS (NM_080637)	TTS (NM_080637)	17388.0	NR_151691	75533.0	Mm.275430	NM_080637	ENSMUSG00000035984	Nme5	1700019D05Rik|Nm23-M5	NME/NM23 family member 5	protein-coding	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95837041-2	chr16	95836541	95837541	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040485, intron 3 of 3)	ID_B1|SINE|B4	61672.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-80278728-1	chr8	80278228	80279228	+	554.0	f1_balb.idr	Intergenic	Intergenic	-215317.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-30424436-1	chr9	30423936	30424936	+	554.0	f0_balb.idr	Intergenic	Intergenic	-2893.0	NM_028874	102607.0	Mm.35084	NM_028874	ENSMUSG00000031993	Snx19	3526401K03Rik|AI195321|AI848208|mKIAA0254	sorting nexin 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33937781-1	chr16	33937281	33938281	+	554.0	f0_balb.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	29257.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-16675209-1	chr1	16674709	16675709	+	554.0	f0_c57.idr	intron (NM_027415, intron 2 of 2)	(TG)n|Simple_repeat|Simple_repeat	10018.0	NM_026392	70397.0	Mm.194225	NM_026392	ENSMUSG00000025940	Tmem70	1110020A09Rik|2210416J16Rik	transmembrane protein 70	protein-coding	1.0	5.5	2.0	1.5	7.5	0.5
Merged-chr8-40687008-1	chr8	40686508	40687508	+	554.0	f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	11931.0	NM_010086	13526.0	Mm.67403	NM_010086	ENSMUSG00000046723	Adam24	Dtgn5	a disintegrin and metallopeptidase domain 24 (testase 1)	protein-coding	0.0	0.0	0.0	5.0	3.5	1.0
Merged-chr1-179830960-2	chr1	179830460	179831460	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR6-int|LTR|ERV1	-26945.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-148984637-1	chr3	148984137	148985137	+	554.0	f1_c57bl6.idr	Intergenic	Intergenic	-30002.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr1-127320184-1	chr1	127319684	127320684	+	554.0	f1_c57bl6.idr	intron (NM_145128, intron 3 of 17)	B4A|SINE|B4	115198.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3420272-1	chr4	3419772	3420772	+	554.0	f1_c57bl6.idr	Intergenic	Intergenic	-116818.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	0.0	0.0	0.0	2.0	2.0	0.0
Merged-chr11-51823994-2	chr11	51823494	51824494	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357588, intron 10 of 12)	intron (NM_001357588, intron 10 of 12)	33487.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122968501-1	chr5	122968001	122969001	+	554.0	f1_balb.idr	intron (NM_001003953, intron 4 of 22)	intron (NM_001003953, intron 4 of 22)	20598.0	NM_001003953	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	0.0	0.0	0.0	1.0	0.0	1.0
Merged-chr8-92850475-1	chr8	92849975	92850975	+	554.0	f1_c57bl6.idr	intron (NM_008610, intron 12 of 12)	intron (NM_008610, intron 12 of 12)	-4858.0	NM_173014	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	26.5	16.0	14.0	2.0	7.0	8.5
Merged-chr9-99244749-2	chr9	99244249	99245249	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023873, intron 1 of 17)	B4A|SINE|B4	1408.0	NM_023873	68121.0	Mm.288739	NM_023873	ENSMUSG00000056267	Cep70	6720484E09Rik|Bite|C030018L16Rik	centrosomal protein 70	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40747523-1	chr9	40747023	40748023	+	554.0	f0_balb.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	-53750.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.0	0.0	1.5	7.0	1.0	4.0
Merged-chr18-62038214-1	chr18	62037714	62038714	+	554.0	f1_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	85139.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	19.0	35.5	29.0	21.5	56.5	36.0
Merged-chr1-106961207-1	chr1	106960707	106961707	+	554.0	f0_balb.idr	Intergenic	B3|SINE|B2	-19777.0	NM_172852	241196.0	Mm.110886	NM_172852	ENSMUSG00000048775	Serpinb13	5430417G24|HUR7|HURPIN|PI13|headpin	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 13	protein-coding	2.5	5.5	0.0	2.0	1.5	3.0
Merged-chr10-86065929-1	chr10	86065429	86066429	+	554.0	f1_c57bl6.idr	intron (NM_013722, intron 10 of 13)	intron (NM_013722, intron 10 of 13)	-29925.0	NR_038024	78170.0	Mm.444790	NR_038024	ENSMUSG00000112493	4930486F22Rik	-	RIKEN cDNA 4930486F22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35747961-2	chr16	35747461	35748461	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 2 of 8)	intron (NM_153550, intron 2 of 8)	21395.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	12.0	13.0	11.0	0.0	8.5	1.5
Merged-chr9-18452333-2	chr9	18451833	18452833	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	21226.0	NM_028935	72230.0	Mm.289689	NM_028160	ENSMUSG00000074500	Zfp558	1700007A21Rik|4932704I17Rik|Zfp558-ps	zinc finger protein 558	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38663805-2	chr15	38663305	38664305	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025494, intron 1 of 12)	B1F1|SINE|Alu	1901.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30566293-1	chr7	30565793	30566793	+	554.0	f1_balb.idr	TTS (NM_170760)	TTS (NM_170760)	866.0	NM_145580	101883.0	Mm.333757	NM_145580	ENSMUSG00000036826	Igflr1	F630003I17Rik|Tmem149	IGF-like family receptor 1	protein-coding	0.0	0.0	5.5	0.0	0.0	0.0
Merged-chr16-32001366-2	chr16	32000866	32001866	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357087, intron 1 of 9)	intron (NM_001357087, intron 1 of 9)	1921.0	NM_001357087	320213.0	Mm.152890	NM_023801	ENSMUSG00000022772	Senp5	6230429P13Rik|A730063F07Rik|AI851888|BB189556|SMT3IP3	SUMO/sentrin specific peptidase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-8430350-2	chr9	8429850	8430850	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113792.0	NM_013838	22068.0	Mm.325086	NM_013838	ENSMUSG00000031997	Trpc6	AV025995|LLHWJM002|LLHWJM003|LLHWJM004|TRP-6|Trrp6|mtrp6	transient receptor potential cation channel, subfamily C, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-78917356-1	chr17	78916856	78917856	+	554.0	f1_balb.idr	intron (NM_001177403, intron 1 of 4)	intron (NM_001177403, intron 1 of 4)	857.0	NM_001177402	68554.0	Mm.391820	NM_001177402	ENSMUSG00000062691	Cebpzos	1110001A16Rik	CCAAT/enhancer binding protein (C/EBP), zeta, opposite strand	protein-coding	50.5	85.0	56.0	10.0	55.0	16.0
Merged-chr11-57674662-1	chr11	57674162	57675162	+	554.0	f1_c57bl6.idr	intron (NM_134189, intron 1 of 11)	intron (NM_134189, intron 1 of 11)	-25168.0	NR_153850	78762.0	Mm.362149	NR_153850		4933424L21Rik	-	RIKEN cDNA 4933424L21 gene	ncRNA	16.5	40.0	32.0	24.5	17.5	8.5
Merged-chr6-57705118-2	chr6	57704618	57705618	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133737, intron 1 of 8)	Lx3C|LINE|L1	2663.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69962618-1	chr12	69962118	69963118	+	554.0	f0_balb.idr	promoter-TSS (NR_036607)	promoter-TSS (NR_036607)	-791.0	NR_036607	100040999.0	Mm.394588	NR_036607	ENSMUSG00000079076	Gm3086	-	RuvB-like protein 1 pseudogene	pseudo	0.0	0.0	0.0	4.5	0.0	0.0
Merged-chr1-86498251-2	chr1	86497751	86498751	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28306.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-3357758-2	chr5	3357258	3358258	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	B2_Mm2|SINE|B2	13865.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-46976795-1	chr14	46976295	46977295	+	554.0	f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	-21867.0	NR_105813	102465206.0		NR_105813	ENSMUSG00000099036	Mir378c	Gm27930|mmu-mir-378c	microRNA 378c	ncRNA	5.0	25.0	17.0	6.0	24.5	18.5
Merged-chr3-10430772-2	chr3	10430272	10431272	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127191, intron 4 of 6)	B1_Mur2|SINE|Alu	9358.0	NM_029068	74718.0	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-83668315-1	chr11	83667815	83668815	+	554.0	f0_c57.idr	Intergenic	Intergenic	5731.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-103282533-1	chr2	103282033	103283033	+	554.0	f0_balb.idr	intron (NM_007914, intron 2 of 8)	intron (NM_007914, intron 2 of 8)	20663.0	NM_007914	13661.0	Mm.10724	NM_007914	ENSMUSG00000012350	Ehf	9030625L19Rik|AU019492	ets homologous factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31347233-1	chr15	31346733	31347733	+	554.0	f0_balb.idr	intron (NM_027496, intron 1 of 3)	RMER19B2|LTR|ERVK	20526.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-86879239-2	chr8	86878739	86879739	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	6019.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	5.5	34.5	19.0	4.5	37.0	32.0
Merged-chr14-76899527-1	chr14	76899027	76900027	+	554.0	f0_balb.idr	Intergenic	Intergenic	137090.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	5.0	1.0	8.0	8.5	0.5	3.5
Merged-chr11-103384442-1	chr11	103383942	103384942	+	554.0	f1_balb.idr	intron (NM_183034, intron 5 of 11)	intron (NM_183034, intron 5 of 11)	-20750.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	26.5	32.0	16.0	14.5	48.0	25.5
Merged-chr15-31343821-1	chr15	31343321	31344321	+	554.0	f0_balb.idr	intron (NM_027496, intron 1 of 3)	intron (NM_027496, intron 1 of 3)	23938.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101219727-2	chr15	101219227	101220227	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1520.0	NR_045996	105968.0	Mm.120798	NR_045996	ENSMUSG00000115944	AU021063	-	expressed sequence AU021063	ncRNA	0.0	4.0	0.0	0.0	0.0	0.0
Merged-chr5-43106392-1	chr5	43105892	43106892	+	554.0	f1_c57bl6.idr	Intergenic	Intergenic	-127071.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	5.5	2.0	3.0	0.0	6.0	3.0
Merged-chr19-41268044-2	chr19	41267544	41268544	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4040.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr2-11543394-2	chr2	11542894	11543894	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	B3|SINE|B2	10535.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43712080-2	chr4	43711580	43712580	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5514.0	NM_019486	56015.0	Mm.377126	NM_019486	ENSMUSG00000046450	Olfr71	MOR262-4|mOR17	olfactory receptor 71	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25494174-2	chr14	25493674	25494674	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	34989.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-142091843-2	chr4	142091343	142092343	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-7539.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	27.5	96.0	78.5	33.5	71.5	86.0
Merged-chr12-52525730-2	chr12	52525230	52526230	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009706, intron 1 of 5)	intron (NM_009706, intron 1 of 5)	9653.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	0.0	6.0	5.0	0.0	1.5	4.5
Merged-chr9-66797488-2	chr9	66796988	66797988	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-2065.0	NM_177583	208117.0	Mm.41291	NM_177583	ENSMUSG00000032375	Aph1b	2310057K14Rik|Aph1c	aph1 homolog B, gamma secretase subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-42093356-1	chr10	42092856	42093856	+	554.0	f0_balb.idr	Intergenic	Intergenic	-74974.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54077436-1	chr13	54076936	54077936	+	554.0	f1_balb.idr	intron (NM_027324, intron 1 of 10)	RSINE1|SINE|B4	5591.0	NM_027324	14057.0	Mm.134191	NM_027324	ENSMUSG00000021474	Sfxn1	2810002O05Rik|A930015P12Rik|f	sideroflexin 1	protein-coding	1.0	2.5	4.0	6.0	9.5	0.0
Merged-chr19-23893350-1	chr19	23892850	23893850	+	554.0	f0_balb.idr	exon (NM_177034, exon 2 of 13)	exon (NM_177034, exon 2 of 13)	134474.0	NM_177034	319924.0	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr19-42036365-2	chr19	42035888	42036888	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020033, intron 1 of 8)	intron (NM_020033, intron 1 of 8)	350.0	NM_020033	56642.0	Mm.143737	NM_020033	ENSMUSG00000025172	Ankrd2	Arpp|mArpp	ankyrin repeat domain 2 (stretch responsive muscle)	protein-coding	3.5	0.0	0.0	0.0	8.0	2.0
Merged-chr3-67577634-1	chr3	67577134	67578134	+	554.0	f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-5134.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	0.0	0.0	4.0	1.0	0.0	4.0
Merged-chr15-27520127-1	chr15	27519627	27520627	+	554.0	f0_balb.idr	intron (NM_020332, intron 1 of 11)	intron (NM_020332, intron 1 of 11)	-51367.0	NR_106065	102466808.0		NR_106065	ENSMUSG00000098416	Mir7117	Gm27729|mmu-mir-7117	microRNA 7117	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100908049-2	chr12	100907549	100908549	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175493, intron 1 of 2)	CpG	149.0	NM_175493	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95876153-2	chr15	95875653	95876653	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 2 of 19)	intron (NM_175344, intron 2 of 19)	-46081.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135764857-1	chr5	135764357	135765357	+	554.0	f1_balb.idr	intron (NM_001289557, intron 3 of 6)	PB1D9|SINE|Alu	13444.0	NM_001289554	76571.0	Mm.247666	NM_029659	ENSMUSG00000019178	Styxl1	1700011C14Rik|Dusp24|Mkstyx	serine/threonine/tyrosine interacting-like 1	protein-coding	0.0	0.0	1.0	2.0	0.0	0.5
Merged-chr9-112934580-2	chr9	112934080	112935080	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	652572.0	NR_040760	102688.0	Mm.394901	NR_040760	ENSMUSG00000109890	AU023762	-	expressed sequence AU023762	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-7029110-1	chr18	7028610	7029610	+	554.0	f1_c57bl6.idr	Intergenic	L1Md_F|LINE|L1	-24331.0	NM_177595	210719.0	Mm.257186	NM_177595	ENSMUSG00000061013	Mkx	9430023B20Rik|Irxl1	mohawk homeobox	protein-coding	0.0	0.0	2.0	3.5	0.0	0.5
Merged-chr1-171157239-1	chr1	171156739	171157739	+	554.0	f0_balb.idr	intron (NM_001315499, intron 1 of 5)	intron (NM_001315499, intron 1 of 5)	1721.0	NM_001315500	17528.0	Mm.9986	NM_008623	ENSMUSG00000056569	Mpz	Mpp|P-zero|P0	myelin protein zero	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115930375-1	chr11	115929875	115930875	+	554.0	f1_balb.idr	intron (NM_130454, intron 2 of 18)	AT_rich|Low_complexity|Low_complexity	3117.0	NM_130454	170472.0	Mm.379351	NM_130454	ENSMUSG00000020752	Recql5	RecQ5|Recq5b|Recql5b	RecQ protein-like 5	protein-coding	2.5	4.0	1.5	7.0	5.5	1.0
Merged-chr8-70328898-1	chr8	70328398	70329398	+	554.0	f0_balb.idr	promoter-TSS (NM_008107)	promoter-TSS (NM_008107)	-867.0	NM_008107	14559.0	Mm.258280	NM_008107	ENSMUSG00000087408	Gdf1	AI385651|Gdf-1	growth differentiation factor 1	protein-coding	0.0	2.0	0.0	0.0	0.0	1.0
Merged-chr2-127398972-1	chr2	127398472	127399472	+	554.0	f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-26227.0	NM_001081089	215456.0	Mm.440454	NM_001081089	ENSMUSG00000046338	Gpat2	A530057A03Rik|Gm116|xGPAT1	glycerol-3-phosphate acyltransferase 2, mitochondrial	protein-coding	6.5	11.5	10.5	5.5	20.5	17.5
Merged-chr2-151575351-1	chr2	151574851	151575851	+	554.0	f1_c57bl6.idr	intron (NM_145535, intron 1 of 8)	intron (NM_145535, intron 1 of 8)	2728.0	NM_145535	228765.0	Mm.32068	NM_145535	ENSMUSG00000027456	Sdcbp2	-	syndecan binding protein (syntenin) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-113338798-2	chr11	113338298	113339298	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027216, intron 6 of 9)	intron (NM_027216, intron 6 of 9)	-129129.0	NR_040276	319871.0	Mm.383743	NR_040276	ENSMUSG00000085421	4732490B19Rik	-	RIKEN cDNA 4732490B19 gene	ncRNA	0.0	9.0	3.0	2.0	0.5	1.5
Merged-chr6-75628193-1	chr6	75627693	75628693	+	554.0	f1_c57bl6.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-1614284.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	0.0	0.0	1.0	0.0	0.0	2.0
Merged-chr6-30174777-1	chr6	30174277	30175277	+	554.0	f1_balb.idr	promoter-TSS (NR_126541)	promoter-TSS (NR_126541)	-652.0	NR_126541	101447999.0		NR_126540		Mirc35hg	-	microRNA cluster 35, host gene	ncRNA	6.5	3.5	0.0	0.0	1.0	0.0
Merged-chr7-45014570-2	chr7	45014070	45015070	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008422, intron 1 of 10)	intron (NM_001008422, intron 1 of 10)	1679.0	NM_001008422	233208.0	Mm.28298	NM_001008422	ENSMUSG00000038406	Scaf1	AI480556|SR-A1	SR-related CTD-associated factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-73468700-2	chr13	73468200	73469200	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145376, intron 1 of 13)	intron (NM_145376, intron 1 of 13)	1317.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-90252047-1	chr11	90251547	90252547	+	554.0	f1_balb.idr	intron (NM_026178, intron 1 of 6)	intron (NM_026178, intron 1 of 6)	2571.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152569867-1	chr1	152569367	152570367	+	554.0	f1_c57bl6.idr	intron (NM_016846, intron 4 of 17)	L2|LINE|L2	55350.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-99391838-2	chr6	99391338	99392338	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053202, intron 1 of 18)	intron (NM_053202, intron 1 of 18)	43507.0	NM_053202	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30948450-1	chr5	30947950	30948950	+	554.0	f1_c57bl6.idr	Intergenic	Intergenic	-1616.0	NR_003522	57742.0	Mm.389615	NM_021304	ENSMUSG00000006638	Abhd1	LABH-1|LABH1	abhydrolase domain containing 1	protein-coding	7.5	0.5	0.0	0.0	0.0	1.5
Merged-chr11-117991286-2	chr11	117990786	117991786	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151726, intron 1 of 9)	ID_B1|SINE|B4	4429.0	NR_151726	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-48285481-2	chr18	48284981	48285981	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	240146.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-156310383-1	chr2	156309883	156310883	+	554.0	f1_balb.idr	TTS (NM_172674)	TTS (NM_172674)	-2090.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	3.0	31.0	15.0	5.0	8.0	15.5
Merged-chr19-55803985-2	chr19	55803446	55804446	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	62136.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	4.5	10.0	8.5	1.0	10.5	16.0
Merged-chr7-19945415-2	chr7	19944915	19945915	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027308, intron 1 of 4)	ORR1E|LTR|ERVL-MaLR	5328.0	NM_027308	70080.0	Mm.98583	NM_027308	ENSMUSG00000040498	Igsf23	2210010C17Rik	immunoglobulin superfamily, member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-101828300-2	chr2	101827800	101828800	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	10680.0	NM_001110849	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	0.0	3.0	0.0	2.0	1.5	3.0
Merged-chr1-9386018-2	chr1	9385520	9386520	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-86143.0	NM_001290392	71096.0	Mm.336395	NM_027671	ENSMUSG00000025909	Sntg1	4933426D16Rik|G1SYN|SYN4	syntrophin, gamma 1	protein-coding	0.0	0.0	1.0	0.0	0.0	0.5
Merged-chr15-98509080-2	chr15	98508555	98509555	+	553.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm-int|LTR|ERVL-MaLR	10779.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32165166-2	chr18	32164666	32165666	+	553.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011946, intron 1 of 16)	intron (NM_011946, intron 1 of 16)	2077.0	NM_011946	26405.0	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73604282-2	chr7	73603782	73604782	+	553.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	-45887.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-105943669-3	chr11	105943179	105944179	+	553.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356374, intron 1 of 6)	intron (NM_001356374, intron 1 of 6)	808.0	NM_007805	13056.0	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-44429971-2	chr11	44429471	44430471	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29908.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	1.0	7.0	11.5	0.0	8.5	7.5
Merged-chr17-5537487-2	chr17	5536987	5537987	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	44887.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-16998079-2	chr12	16997579	16998579	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172574, intron 1 of 6)	intron (NM_172574, intron 1 of 6)	2039.0	NM_172574	217430.0	Mm.379451	NM_172574	ENSMUSG00000045679	Pqlc3	C78076|E030024M05Rik	PQ loop repeat containing	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr9-32474479-2	chr9	32473979	32474979	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 2 of 8)	L2|LINE|L2	66973.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4833615-2	chr11	4833115	4834115	+	553.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252253)	promoter-TSS (NM_001252253)	-480.0	NM_001252253	18016.0	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	10.5	18.5	17.5	3.5	25.5	7.5
Merged-chr2-23005449-2	chr2	23004949	23005949	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	MLTR25A|LTR|ERVK	34792.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-38433298-2	chr12	38432798	38433798	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178681, intron 21 of 24)	Lx3_Mus|LINE|L1	181223.0	NR_045943	73867.0	Mm.78933	NR_045943	ENSMUSG00000112967	4930428E07Rik	-	RIKEN cDNA 4930428E07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-76735667-2	chr11	76735212	76736212	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356321, intron 7 of 8)	intron (NM_001356321, intron 7 of 8)	27866.0	NM_016810	53334.0	Mm.20931	NM_016810	ENSMUSG00000010392	Gosr1	AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28	golgi SNAP receptor complex member 1	protein-coding	11.5	30.0	8.0	22.5	11.0	22.5
Merged-chr5-117903661-2	chr5	117903161	117904161	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 7 of 27)	intron (NM_008712, intron 7 of 27)	36822.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91232089-2	chr16	91231589	91232589	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6539.0	NM_016967	50913.0	Mm.37289	NM_016967	ENSMUSG00000039830	Olig2	AI604895|Bhlhb1|Olg-2|Oligo2|RK17|bHLHe19	oligodendrocyte transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-95937933-2	chr12	95937433	95938433	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109289.0	NR_103800	69423.0	Mm.46121	NM_027076		1700019M22Rik	-	NFX-like protein	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78873113-2	chr15	78872613	78873613	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-4077.0	NM_145929	106039.0	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	0.0	0.0	1.5	0.0	0.0	1.5
Merged-chr11-83273336-2	chr11	83272836	83273836	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	13390.0	NM_001166028	237890.0	Mm.297670	NM_001166028	ENSMUSG00000082101	Slfn14	Gm20|Slfn14-ps	schlafen 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-28069370-2	chr5	28068870	28069870	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2042.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33917244-2	chr16	33916744	33917744	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 9 of 14)	intron (NM_001145884, intron 9 of 14)	49794.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-4964305-2	chr5	4963805	4964805	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 10 of 14)	RMER13A1|LTR|ERVK	-206089.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr9-72780855-2	chr9	72780355	72781355	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26419.0	NM_175485	235472.0	Mm.31696	NM_175485	ENSMUSG00000036030	Prtg	A230098A12Rik|Igdcc5	protogenin	protein-coding	0.0	1.0	0.0	0.0	1.0	0.0
Merged-chr11-54054470-2	chr11	54053970	54054970	+	553.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019417)	TTS (NM_019417)	14547.0	NM_019417	30794.0	Mm.21830	NM_019417	ENSMUSG00000020388	Pdlim4	Ril	PDZ and LIM domain 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8802866-2	chr10	8802366	8803366	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 4 of 19)	intron (NM_175155, intron 4 of 19)	83204.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	1.5	0.0	0.0	0.0	2.0	0.5
Merged-chr19-56741247-2	chr19	56740747	56741747	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER110|LTR|ERV1	18875.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125176538-1	chr8	125176038	125177038	+	553.5	f0_balb.idr	intron (NM_174854, intron 9 of 12)	intron (NM_174854, intron 9 of 12)	122343.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	0.0	13.0	4.0	9.0	10.5	21.0
Merged-chr6-145810779-2	chr6	145810279	145811279	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027760, intron 1 of 3)	ORR1C2|LTR|ERVL-MaLR	2396.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10373070-2	chr17	10372570	10373570	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48468.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-114556940-2	chr14	114556440	114557440	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-275025.0	NR_045661	75822.0	Mm.410813	NR_045661	ENSMUSG00000115320	4930524C18Rik	-	RIKEN cDNA 4930524C18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43520324-2	chr1	43519824	43520824	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 2 of 4)	ORR1C2|LTR|ERVL-MaLR	74573.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27927732-2	chr15	27927232	27928232	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	98116.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31425710-2	chr16	31425210	31426210	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175177, intron 1 of 6)	intron (NM_175177, intron 1 of 6)	-3043.0	NM_001122683	71911.0	Mm.293470	NM_175177	ENSMUSG00000046598	Bdh1	2310032J20Rik|AI327223|Bdh	3-hydroxybutyrate dehydrogenase, type 1	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr12-85451949-2	chr12	85451449	85452449	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21941.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167970933-2	chr2	167970433	167971433	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 4 of 8)	intron (NM_011201, intron 4 of 8)	38606.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87972731-2	chr3	87972231	87973231	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016701, intron 1 of 3)	intron (NM_016701, intron 1 of 3)	1638.0	NM_016701	18008.0	Mm.331129	NM_016701	ENSMUSG00000004891	Nes	AA166324|C78523|ESTM46|Ifaprc2|Marc2|RC2	nestin	protein-coding	2.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60711614-2	chr10	60711114	60712114	+	553.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023596)	TTS (NM_023596)	-15124.0	NM_023370	22295.0	Mm.440327	NM_023370	ENSMUSG00000012819	Cdh23	4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v	cadherin 23 (otocadherin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-107472222-2	chr3	107471722	107472722	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172271, intron 10 of 11)	intron (NM_172271, intron 10 of 11)	-13324.0	NM_001356447	99738.0	Mm.101976	NM_145922	ENSMUSG00000027895	Kcnc4	AI850292|KSHIIIC|Kcr2-4|Kv3.4	potassium voltage gated channel, Shaw-related subfamily, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59673246-2	chr11	59672746	59673746	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_201245, intron 1 of 22)	MTC|LTR|ERVL-MaLR	10751.0	NM_012027	26936.0	Mm.2402	NM_012027	ENSMUSG00000005417	Mprip	9530046C02|AA536749|AI647711|C76423|Gm34094|RIP3|Rhoip3|mKIAA0864|p116Rip	myosin phosphatase Rho interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126286790-2	chr4	126286290	126287290	+	553.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199473)	promoter-TSS (NM_199473)	-4.0	NM_199473	329941.0	Mm.296327	NM_199473	ENSMUSG00000056174	Col8a2	AI429819	collagen, type VIII, alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158861622-2	chr2	158861122	158862122	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66815.0	NM_001291144	71715.0	Mm.315652	NM_145742	ENSMUSG00000027655	Dhx35	1200009D07Rik|Ddx35	DEAH (Asp-Glu-Ala-His) box polypeptide 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101978796-2	chr11	101978296	101979296	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028207, intron 2 of 2)	intron (NM_028207, intron 2 of 2)	5995.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67715282-2	chr18	67714788	67715788	+	553.5	f0_balb.idr|f1_balb.idr	intron (NM_008977, intron 1 of 9)	MTC|LTR|ERVL-MaLR	9333.0	NM_001127177	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	2.5	8.5	9.5	4.0	18.0	8.0
Merged-chr19-10215089-2	chr19	10214589	10215589	+	553.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033481, exon 19 of 26)	exon (NM_001033481, exon 19 of 26)	9056.0	NM_001163431	69038.0	Mm.375100	NM_026919	ENSMUSG00000036372	Tmem258	1810006K21Rik	transmembrane protein 258	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60877388-2	chr18	60876888	60877888	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28424.0	NM_001198984	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr16-93808559-2	chr16	93808059	93809059	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357118, intron 34 of 35)	L1ME1|LINE|L1	-13658.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-32396835-2	chr18	32396335	32397335	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 1 of 17)	intron (NM_001360876, intron 1 of 17)	-18551.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86188734-2	chr15	86188234	86189234	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2593.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55661252-2	chr19	55660752	55661752	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	40952.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0.0	5.5	3.0	0.0	12.0	1.0
Merged-chr2-59239587-2	chr2	59239087	59240087	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	78737.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32212644-2	chr19	32212144	32213144	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	-1631.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-48794859-2	chr2	48794359	48795359	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19250.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19592796-2	chr10	19592296	19593296	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010511, intron 1 of 6)	intron (NM_010511, intron 1 of 6)	847.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91595956-2	chr16	91595456	91596456	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030018, intron 1 of 6)	intron (NM_030018, intron 1 of 6)	1724.0	NM_030018	77975.0	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-46455553-2	chr17	46455053	46456053	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162864, intron 13 of 14)	CpG	-17076.0	NM_144856	108114.0	Mm.387538	NM_144856	ENSMUSG00000067144	Slc22a7	NLT|OAT2	solute carrier family 22 (organic anion transporter), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107382989-2	chr11	107382489	107383489	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	87731.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73716925-2	chr12	73716425	73717425	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 9 of 13)	(TCTG)n|Simple_repeat|Simple_repeat	132129.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145223422-2	chr4	145222922	145223922	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 7 of 9)	intron (NM_011610, intron 7 of 9)	23448.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-60598845-2	chr12	60598345	60599345	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	922975.0	NR_045049	100504101.0	Mm.235026	NR_045049	ENSMUSG00000113429	Gm20063	-	predicted gene, 20063	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119409823-2	chr11	119409323	119410323	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19351.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.0	0.0	1.0	0.0	1.0	0.0
Merged-chr4-109692940-2	chr4	109692440	109693440	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007983, intron 1 of 18)	intron (NM_007983, intron 1 of 18)	16313.0	NM_007983	14084.0	Mm.318259	NM_007983	ENSMUSG00000010517	Faf1	AA408698|Dffrx|Fam	Fas-associated factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20427309-2	chr16	20426809	20427809	+	553.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013790)	promoter-TSS (NM_013790)	-915.0	NM_176839	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-117495942-2	chr4	117495442	117496442	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025739, intron 1 of 14)	CpG	1110.0	NM_025739	66743.0	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83466348-2	chr15	83465848	83466848	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1742.0	NM_001358643	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-64744687-2	chr8	64744187	64745187	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178633, intron 13 of 14)	MRLTR33|LTR|ERVK	-11109.0	NM_025436	66234.0	Mm.30119	NM_025436	ENSMUSG00000031604	Msmo1	1500001G16Rik|C78600|DESP4|ERG25|Sc4mol	methylsterol monoxygenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-12316498-2	chr17	12315998	12316998	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357722, intron 1 of 25)	Charlie15b|DNA|hAT-Charlie	2162.0	NM_011948	26407.0	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-23014319-2	chr2	23013819	23014819	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	RLTR6-int|LTR|ERV1	25922.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65574776-2	chr5	65574276	65575276	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016786, intron 3 of 6)	RMER6A|LTR|ERVK	37531.0	NM_001310619	53323.0	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-5364220-2	chr8	5363720	5364720	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-258933.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131279558-2	chr1	131279058	131280058	+	553.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019777)	promoter-TSS (NM_019777)	5.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0.0	16.5	4.5	2.0	8.5	5.5
Merged-chr1-181172591-2	chr1	181172091	181173091	+	553.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145514)	TTS (NM_145514)	21660.0	NM_030131	98417.0	Mm.38229	NM_030131	ENSMUSG00000062169	Cnih4	AI647760|AW050376|CNIH-4|D530030D03Rik|E430023H19Rik|HSPC163	cornichon family AMPA receptor auxiliary protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81785333-2	chr13	81784833	81785833	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007684, intron 2 of 4)	B4A|SINE|B4	2086.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7843634-2	chr9	7843134	7844134	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-6577.0	NM_007465	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-55813714-2	chr4	55813214	55814214	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-281239.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-86241018-2	chr16	86240518	86241518	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-339893.0	NM_011782	23794.0	Mm.112933	NM_011782	ENSMUSG00000022894	Adamts5	9530092O11Rik|ADAM-TS5|ADAMTS1|ADAMTS11|ADMP-2|AI481094|ASMP-2	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)	protein-coding	1.0	15.0	0.0	1.0	1.5	1.5
Merged-chr3-27613022-2	chr3	27612522	27613522	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 4 of 26)	B3|SINE|B2	-28027.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-85518639-2	chr3	85518139	85519139	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51262.0	NR_130326	100316670.0		NR_130326	ENSMUSG00000080424	Mir466k	Mirn466k|mmu-mir-466k	microRNA 466k	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78179727-2	chr11	78179227	78180227	+	553.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_106113)	TTS (NR_106113)	900.0	NR_106113	102465761.0		NR_106113	ENSMUSG00000099101	Mir7653	Gm27900|mmu-mir-7653	microRNA 7653	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53066459-2	chr4	53065959	53066959	+	553.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 29 of 49)	intron (NM_013454, intron 29 of 49)	54579.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-15765615-1	chr6	15765115	15766115	+	553.0	f1_balb.idr	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	44954.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143599353-2	chr7	143598853	143599853	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013742, intron 1 of 22)	intron (NM_013742, intron 1 of 22)	737.0	NM_001252593	27267.0	Mm.125659	NM_013742	ENSMUSG00000010755	Cars	CA3	cysteinyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4008703-1	chr19	4008203	4009203	+	553.0	f1_c57bl6.idr	exon (NM_133666, exon 6 of 10)	exon (NM_133666, exon 6 of 10)	4052.0	NM_133666	17995.0	Mm.29842	NM_133666	ENSMUSG00000037916	Ndufv1	CI-51kD	NADH dehydrogenase (ubiquinone) flavoprotein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-81201054-2	chr15	81200554	81201554	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	10201.0	NR_015603	67638.0	Mm.390832	NM_026288	ENSMUSG00000047938	4930483J18Rik	-	RIKEN cDNA 4930483J18 gene	ncRNA	1.0	0.0	0.0	2.5	0.0	0.0
Merged-chr7-55238929-1	chr7	55238429	55239429	+	553.0	f1_balb.idr	intron (NM_178705, intron 9 of 11)	intron (NM_178705, intron 9 of 11)	403684.0	NM_178705	233271.0	Mm.387344	NM_178705	ENSMUSG00000063297	Luzp2	9330154K17Rik|D130073E01	leucine zipper protein 2	protein-coding	0.0	0.0	1.0	0.0	0.0	0.5
Merged-chr5-122371437-1	chr5	122370937	122371937	+	553.0	f1_balb.idr	intron (NM_026883, intron 1 of 6)	B1_Mus1|SINE|Alu	526.0	NM_026883	68948.0	Mm.474469	NM_026883	ENSMUSG00000029463	Fam216a	1500011H22Rik	family with sequence similarity 216, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89386211-1	chr3	89385711	89386711	+	553.0	f1_c57bl6.idr	intron (NM_001355206, intron 1 of 3)	intron (NM_001355206, intron 1 of 3)	1460.0	NM_001355212	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-69990754-2	chr9	69990254	69991254	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008238, intron 1 of 9)	intron (NM_001008238, intron 1 of 9)	1288.0	NM_001008238	12175.0	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	3.5	4.5	5.5	3.5	16.0	5.0
Merged-chr2-166686000-2	chr2	166685500	166686500	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	27832.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167324329-1	chr2	167323829	167324829	+	553.0	f1_balb.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	24849.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-77943912-2	chr18	77943412	77944412	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195633, intron 1 of 43)	B2_Mm2|SINE|B2	5445.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5902161-1	chr11	5901661	5902661	+	553.0	f1_c57bl6.idr	exon (NM_010292, exon 9 of 10)	exon (NM_010292, exon 9 of 10)	-3379.0	NM_022879	17898.0	Mm.46514	NM_022879	ENSMUSG00000020469	Myl7	MLC-2alpha|MLC2a|MYL2A|Mylc2a|RLC-A	myosin, light polypeptide 7, regulatory	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16291519-2	chr7	16291012	16292012	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4717.0	NM_001136471	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	12.5	5.0	0.0	5.0	8.5	0.0
Merged-chr8-53517217-2	chr8	53516717	53517717	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005847, intron 4 of 8)	Charlie12|DNA|hAT-Charlie	5515.0	NM_001005847	11593.0	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150885396-2	chr2	150884896	150885896	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 1 of 12)	RMER1A|Other|Other	19335.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123933749-1	chr5	123933249	123934249	+	553.0	f1_c57bl6.idr	intron (NM_001134767, intron 1 of 12)	intron (NM_001134767, intron 1 of 12)	3060.0	NM_001134767	208908.0	Mm.243679	NM_001134767	ENSMUSG00000061882	Ccdc62	AI661708|G1-485-3|Gm150|repro29	coiled-coil domain containing 62	protein-coding	1.0	17.5	11.5	1.5	7.5	3.0
Merged-chr9-57146332-2	chr9	57145832	57146832	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151685, intron 2 of 8)	intron (NR_151685, intron 2 of 8)	1973.0	NM_028347	72774.0	Mm.35749	NM_028347	ENSMUSG00000032298	Neil1	2810450N13Rik|NEH1|Nei1	nei endonuclease VIII-like 1 (E. coli)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-140817575-2	chr6	140817075	140818075	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	190690.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-109908728-1	chr1	109908228	109909228	+	553.0	f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-74172.0	NM_001316743	241201.0	Mm.213407	NM_172853	ENSMUSG00000026312	Cdh7	9330156F07Rik|CDH7L1	cadherin 7, type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56170532-1	chr17	56170032	56171032	+	553.0	f1_balb.idr	intron (NM_025566, intron 1 of 1)	ID_B1|SINE|B4	8041.0	NM_025566	66443.0	Mm.2312	NM_025566	ENSMUSG00000044469	Tnfaip8l1	2600017J23Rik|TIPE1	tumor necrosis factor, alpha-induced protein 8-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-24953514-1	chr16	24953014	24954014	+	553.0	f0_c57.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-106125.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-68475136-1	chr2	68474636	68475636	+	553.0	f1_balb.idr	Intergenic	Intergenic	-3155.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-7324531-2	chr13	7324031	7325031	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-675760.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100547071-2	chr5	100546571	100547571	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359204, intron 10 of 10)	B1_Mur1|SINE|Alu	25134.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0.0	0.0	2.0	1.5	0.0	0.0
Merged-chr10-78371758-2	chr10	78371258	78372258	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-20058.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67721967-2	chr10	67721453	67722453	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-149994.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121311025-1	chr14	121310525	121311525	+	553.0	f1_c57bl6.idr	intron (NM_145465, intron 2 of 10)	intron (NM_145465, intron 2 of 10)	62319.0	NR_155502	320268.0	Mm.435974	NR_155502		B930095G15Rik	-	RIKEN cDNA B930095G15 gene	ncRNA	3.0	0.0	0.0	3.0	0.0	0.0
Merged-chr8-122612421-1	chr8	122611921	122612921	+	553.0	f1_balb.idr	promoter-TSS (NM_016722)	promoter-TSS (NM_016722)	795.0	NM_021502	59005.0	Mm.38746	NM_021502	ENSMUSG00000015013	Trappc2l	1810017G16Rik|AB030200|Hspc176|Tca17	trafficking protein particle complex 2-like	protein-coding	6.0	20.0	12.5	6.5	12.5	7.5
Merged-chr12-103392011-2	chr12	103391511	103392511	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026580, intron 1 of 5)	intron (NM_026580, intron 1 of 5)	3329.0	NM_001177841	68149.0	Mm.127378	NM_026580	ENSMUSG00000021203	Otub2	2010015L18Rik|4930586I02Rik|AI413508|AW557219|OTB2|OTU2	OTU domain, ubiquitin aldehyde binding 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120101567-1	chr2	120101067	120102067	+	553.0	f1_balb.idr	intron (NM_133838, intron 4 of 5)	intron (NM_133838, intron 4 of 5)	53008.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-48197138-1	chr4	48196638	48197638	+	553.0	f1_c57bl6.idr	intron (NM_001355184, intron 9 of 10)	B3|SINE|B2	16077.0	NR_035484	100316708.0		NR_035484	ENSMUSG00000087844	Mir1958	mmu-mir-1958	microRNA 1958	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138435228-1	chr4	138434728	138435728	+	553.0	f0_balb.idr	intron (NM_026689, intron 1 of 3)	intron (NM_026689, intron 1 of 3)	556.0	NM_026689	68350.0	Mm.103413	NM_026689	ENSMUSG00000041241	Mul1	0610009K11Rik|AV000801|Gide	mitochondrial ubiquitin ligase activator of NFKB 1	protein-coding	35.5	109.5	83.5	24.5	99.0	78.5
Merged-chr11-44408769-1	chr11	44408269	44409269	+	553.0	f0_balb.idr	intron (NM_001303244, intron 4 of 7)	intron (NM_001303244, intron 4 of 7)	8706.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-86792400-1	chr6	86791900	86792900	+	553.0	f1_balb.idr	intron (NM_013471, intron 1 of 12)	intron (NM_013471, intron 1 of 12)	1184.0	NM_013471	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr8-117609002-1	chr8	117608502	117609502	+	553.0	f1_balb.idr	intron (NM_172285, intron 25 of 32)	intron (NM_172285, intron 25 of 32)	62545.0	NM_028725	74032.0	Mm.296302	NM_028725	ENSMUSG00000034308	Sdr42e1	4632417N05Rik|AI117603	short chain dehydrogenase/reductase family 42E, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65943983-1	chr3	65943483	65944483	+	553.0	f0_balb.idr	Intergenic	Intergenic	14266.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	4.5	25.0	14.0	0.0	8.0	10.5
Merged-chr6-87323572-2	chr6	87323072	87324072	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054041, intron 1 of 17)	intron (NM_054041, intron 1 of 17)	12203.0	NM_054041	69538.0	Mm.232525	NM_054041	ENSMUSG00000033420	Antxr1	2310008J16Rik|2810405N18Rik|Antrx1|Tem8	anthrax toxin receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148075892-2	chr4	148075392	148076392	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12172.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-75759797-1	chr12	75759297	75760297	+	553.0	f1_c57bl6.idr	Intergenic	Intergenic	-24068.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105413025-2	chr8	105412525	105413525	+	553.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170788)	promoter-TSS (NM_001170788)	477.0	NM_177791	279499.0	Mm.67628	NM_177791	ENSMUSG00000051648	Kctd19	4922504H04Rik	potassium channel tetramerisation domain containing 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7916363-2	chr9	7915863	7916863	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-43193.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40728408-1	chr19	40727908	40728908	+	553.0	f0_balb.idr	intron (NM_001304721, intron 7 of 9)	intron (NM_001304721, intron 7 of 9)	68638.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	6.5	6.0	1.5	13.0	2.0	8.5
Merged-chr10-24107225-1	chr10	24106725	24107725	+	553.0	f1_balb.idr	Intergenic	RMER20C_Mm|LTR|ERVK	2309.0	NM_001010831	503558.0	Mm.300923	NM_001010831	ENSMUSG00000037424	Taar9	Gm231|taR-9	trace amine-associated receptor 9	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr18-46536095-1	chr18	46535595	46536595	+	553.0	f1_balb.idr	Intergenic	Intergenic	-10124.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22875034-2	chr11	22874534	22875534	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14698.0	NM_001169114	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133663544-1	chr4	133663044	133664044	+	553.0	f1_c57bl6.idr	intron (NM_001145956, intron 2 of 2)	RMER10B|LTR|ERVL	9103.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	7.0	23.5	12.5	25.0	72.0	55.0
Merged-chr15-98791474-1	chr15	98790974	98791974	+	553.0	f1_balb.idr	intron (NM_021279, intron 2 of 3)	intron (NM_021279, intron 2 of 3)	1617.0	NM_021279	22408.0	Mm.1123	NM_021279	ENSMUSG00000022997	Wnt1	Int-1|Wnt-1|sw|swaying	wingless-type MMTV integration site family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62285300-2	chr10	62284800	62285800	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010438, intron 14 of 21)	B1_Mus2|SINE|Alu	32862.0	NM_009314	21337.0	Mm.8054	NM_009314	ENSMUSG00000020081	Tacr2	Nk2r|Skr|Tac2r	tachykinin receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-10976816-1	chr4	10976316	10977316	+	553.0	f0_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	30803.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	35.5	54.5	31.0	21.0	37.0	47.0
Merged-chr19-25027956-1	chr19	25027456	25028456	+	553.0	f1_balb.idr	intron (NM_028785, intron 1 of 47)	ORR1E|LTR|ERVL-MaLR	28427.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	12.0	7.0	22.0	3.0	39.0	14.0
Merged-chr11-76463627-1	chr11	76463127	76464127	+	553.0	f1_balb.idr	exon (NM_001291186, exon 3 of 18)	exon (NM_001291186, exon 3 of 18)	4838.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	9.0	4.0	5.5	2.0	0.0	2.5
Merged-chr1-146679862-2	chr1	146679362	146680362	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357572, intron 3 of 8)	Lx3_Mus|LINE|L1	182175.0	NM_001145807	215378.0	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-97919509-2	chr2	97919009	97920009	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR21|LTR|ERVK	451852.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5403591-2	chr2	5403091	5404091	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030601, intron 1 of 1)	intron (NR_030601, intron 1 of 1)	24201.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-97991688-1	chr16	97991188	97992188	+	553.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-5627.0	NM_001362093	245305.0	Mm.148033	NM_001362093		B230307C23Rik	8030444G23Rik|EG245305	RIKEN cDNA B230307C23 gene	protein-coding	2.5	0.0	0.0	1.5	0.0	2.0
Merged-chr11-115055877-2	chr11	115055377	115056377	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172050, intron 1 of 3)	intron (NM_172050, intron 1 of 3)	6162.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-121804521-1	chr14	121804021	121805021	+	553.0	f1_c57bl6.idr	Intergenic	Intergenic	-6787.0	NM_134074	105445.0	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	5.0	5.5	2.5	3.0	0.0	4.0
Merged-chr9-53717633-1	chr9	53717133	53718133	+	553.0	f0_balb.idr	Intergenic	Intergenic	-11401.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115634980-2	chr5	115634480	115635480	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198163, intron 1 of 5)	intron (NM_198163, intron 1 of 5)	2993.0	NM_198163	77407.0	Mm.27553	NM_198163	ENSMUSG00000029518	Rab35	9530019H02Rik|AU040256|H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122395287-1	chr5	122394787	122395787	+	553.0	f1_c57bl6.idr	intron (NM_019824, intron 1 of 6)	B4A|SINE|B4	3409.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139158498-1	chr4	139157998	139158998	+	553.0	f0_balb.idr	Intergenic	Intergenic	22157.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	1.5	8.0	5.0	10.0	17.0	35.5
Merged-chr19-6860982-2	chr19	6860482	6861482	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2771.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116126632-1	chr6	116126132	116127132	+	553.0	f1_balb.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	66742.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35294145-1	chr12	35293645	35294645	+	553.0	f1_balb.idr	Intergenic	B4A|SINE|B4	-99248.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	26.5	33.0	20.5	14.0	33.5	21.0
Merged-chr13-40859682-2	chr13	40859182	40860182	+	553.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023887)	promoter-TSS (NM_023887)	-86.0	NM_023887	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106379850-2	chr1	106379350	106380350	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 13 of 16)	B4|SINE|B4	166781.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-133545993-1	chr3	133545493	133546493	+	553.0	f0_balb.idr	Intergenic	Intergenic	-1603.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121604052-1	chr8	121603552	121604552	+	553.0	f1_balb.idr	exon (NM_080855, exon 12 of 13)	exon (NM_080855, exon 12 of 13)	13584.0	NM_026160	67443.0	Mm.28357	NM_026160	ENSMUSG00000031812	Map1lc3b	1010001C15Rik|Atg8|LC3b|Map1lc3	microtubule-associated protein 1 light chain 3 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-195023630-2	chr1	195023130	195024130	+	553.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015566, exon 5 of 8)	non-coding (NR_015566, exon 5 of 8)	6231.0	NR_015566	320977.0	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-110672286-1	chr8	110671786	110672786	+	553.0	f0_balb.idr	intron (NR_151674, intron 13 of 18)	intron (NR_151674, intron 13 of 18)	-49190.0	NM_198625	244654.0	Mm.490385	NM_198625	ENSMUSG00000033763	Mtss1l	ABBA	metastasis suppressor 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-82039390-1	chr6	82038890	82039890	+	553.0	f0_balb.idr	Intergenic	Intergenic	-2238.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	0.0	0.0	1.0	1.0	6.0	0.0
Merged-chr11-4200209-2	chr11	4199709	4200709	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	13376.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	0.0	2.0	3.5	0.0	0.0	0.0
Merged-chr16-4912292-2	chr16	4911792	4912792	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 4 of 17)	intron (NM_001357062, intron 4 of 17)	26192.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80094124-1	chr15	80093624	80094624	+	553.0	f1_c57bl6.idr	intron (NM_207708, intron 1 of 3)	MER81|DNA|hAT-Blackjack	2790.0	NM_207708	20972.0	Mm.230301	NM_009303	ENSMUSG00000022415	Syngr1	R75468|Syngr1b|p29	synaptogyrin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-75210345-1	chr16	75209845	75210845	+	553.0	f1_balb.idr	Intergenic	L1_Mur2|LINE|L1	-117575.0	NM_001358492	268902.0	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83369785-2	chr15	83369285	83370285	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2488.0	NR_027980	69291.0	Mm.66794	NM_001033147		1700001L05Rik	-	RIKEN cDNA 1700001L05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180922521-2	chr2	180922048	180923048	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1612.0	NM_173761	228994.0	Mm.30205	NM_173761	ENSMUSG00000038848	Ythdf1	2210410K23Rik|8030473O16	YTH domain family 1	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr11-115264221-1	chr11	115263721	115264721	+	553.0	f1_balb.idr	intron (NM_010350, intron 3 of 14)	intron (NM_010350, intron 3 of 14)	3022.0	NM_010350	14813.0	Mm.39090	NM_010350	ENSMUSG00000020734	Grin2c	GluN2C|NMDAR2C|NR2C	glutamate receptor, ionotropic, NMDA2C (epsilon 3)	protein-coding	0.0	0.0	0.0	0.0	1.0	0.5
Merged-chr15-83153900-2	chr15	83153400	83154400	+	553.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029787, exon 9 of 9)	3' UTR (NM_029787, exon 9 of 9)	4255.0	NR_004432	104307.0	Mm.471434	NR_004432	ENSMUSG00000065176	Rnu12	-	RNA U12, small nuclear	snRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43679333-1	chr19	43678833	43679833	+	553.0	f0_balb.idr	Intergenic	Charlie2b|DNA|hAT-Charlie	4155.0	NR_045645	100502982.0	Mm.313570	NR_045645		BC037704	-	cDNA sequence BC037704	ncRNA	21.0	61.0	32.5	19.0	66.5	32.0
Merged-chr7-118486124-1	chr7	118485624	118486624	+	553.0	f1_c57bl6.idr	3' UTR (NM_001033380, exon 1 of 1)	3' UTR (NM_001033380, exon 1 of 1)	5851.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	47.0	120.5	74.0	39.0	110.0	55.0
Merged-chr8-108692739-1	chr8	108692239	108693239	+	553.0	f0_balb.idr	Intergenic	Intergenic	-21905.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.5	2.5	1.5	2.5	0.5	0.0
Merged-chr7-25723544-2	chr7	25723044	25724044	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144922, intron 13 of 14)	B2_Mm2|SINE|B2	-4491.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12120155-1	chr18	12119655	12120655	+	553.0	f1_balb.idr	intron (NM_178801, intron 1 of 14)	B3A|SINE|B2	1382.0	NR_110356	338363.0	Mm.271567	NM_178801	ENSMUSG00000049411	Tmem241	6030446N20Rik	transmembrane protein 241	protein-coding	6.0	0.0	2.5	4.5	0.0	1.0
Merged-chr6-94054128-1	chr6	94053628	94054628	+	553.0	f0_balb.idr	intron (NM_001029850, intron 1 of 23)	intron (NM_001029850, intron 1 of 23)	-140438.0	NM_001083320	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.0	0.0	0.0	4.5	0.0	0.0
Merged-chr13-4611037-1	chr13	4610537	4611537	+	553.0	f1_c57bl6.idr	Intergenic	Intergenic	-1873.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	0.0	0.0	1.5	0.0	0.0	1.5
Merged-chr6-31050351-2	chr6	31049851	31050851	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2D|LTR|ERVL	12396.0	NR_029744	387222.0		NR_029744	ENSMUSG00000065610	Mir29a	Mirn29a|mir-29a|mmu-mir-29a	microRNA 29a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11476327-1	chr4	11475827	11476827	+	553.0	f0_c57.idr	Intergenic	Intergenic	-9631.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56933977-2	chr17	56933477	56934477	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022328, intron 1 of 11)	intron (NM_022328, intron 1 of 11)	1411.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67359384-1	chr17	67358884	67359884	+	553.0	f1_c57bl6.idr	Intergenic	Intergenic	-4893.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17647051-2	chr16	17646551	17647551	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166164, intron 1 of 7)	intron (NM_001166164, intron 1 of 7)	581.0	NM_001166164	72315.0	Mm.297777	NM_001166164	ENSMUSG00000041617	Ccdc74a	2310015A05Rik	coiled-coil domain containing 74A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19060546-2	chr3	19060046	19061046	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102549.0	NM_028840	74252.0	Mm.200383	NM_028840	ENSMUSG00000027599	Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66559869-2	chr15	66559409	66560409	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172514, intron 1 of 9)	intron (NM_172514, intron 1 of 9)	1137.0	NM_172514	213068.0	Mm.132299	NM_172514	ENSMUSG00000036944	Tmem71	AI661017|E430024D12	transmembrane protein 71	protein-coding	64.5	128.5	88.5	41.0	60.0	60.5
Merged-chr13-31349877-1	chr13	31349377	31350377	+	553.0	f1_balb.idr	Intergenic	Intergenic	-108791.0	NR_045957	73924.0	Mm.417825	NR_045957	ENSMUSG00000087460	4930401O12Rik	-	RIKEN cDNA 4930401O12 gene	ncRNA	0.0	0.0	0.0	0.0	4.0	0.5
Merged-chr4-133480688-1	chr4	133480188	133481188	+	553.0	f0_balb.idr	intron (NM_175307, intron 1 of 1)	intron (NM_175307, intron 1 of 1)	555.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	0.0	19.0	2.0	2.0	9.5	2.0
Merged-chr14-30627110-1	chr14	30626610	30627610	+	553.0	f0_balb.idr	promoter-TSS (NM_011103)	promoter-TSS (NM_011103)	-902.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	8.0	13.0	14.0	11.0	33.5	17.0
Merged-chr15-101103567-2	chr15	101103067	101104067	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12188.0	NM_144790	208258.0	Mm.152952	NM_144790	ENSMUSG00000047034	Ankrd33	A930021G21Rik|Panky|Panky-a	ankyrin repeat domain 33	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr13-60745420-2	chr13	60744920	60745920	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 19 of 26)	intron (NM_134062, intron 19 of 26)	40944.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-55379918-1	chr6	55379418	55380418	+	553.0	f0_balb.idr	intron (NM_001003685, intron 4 of 12)	intron (NM_001003685, intron 4 of 12)	3623.0	NM_001003685	14602.0	Mm.89928	NM_001003685	ENSMUSG00000004654	Ghrhr	Ghrfr|lit|little	growth hormone releasing hormone receptor	protein-coding	8.5	0.5	0.0	0.0	0.0	2.0
Merged-chr5-137863591-2	chr5	137863089	137864089	+	553.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5540.0	NM_133209	170741.0	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59458365-2	chr10	59457865	59458865	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033259, intron 4 of 7)	intron (NM_001033259, intron 4 of 7)	-16586.0	NM_010959	18302.0	Mm.123013	NM_010959	ENSMUSG00000009654	Oit3	EF-9|LZP	oncoprotein induced transcript 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-101795729-2	chr2	101795229	101796229	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	1978.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	6.0	24.5	11.5	3.5	6.5	13.0
Merged-chr13-30632058-2	chr13	30631558	30632558	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17015.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-84050429-1	chr3	84049929	84050929	+	553.0	f0_balb.idr	Intergenic	Intergenic	-10268.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	0.0	2.5	0.0	0.0	5.0	0.5
Merged-chr5-125354200-1	chr5	125353700	125354700	+	553.0	f1_balb.idr	Intergenic	Intergenic	-13106.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.0	4.0	2.0	0.0	0.0	1.5
Merged-chr2-62653267-2	chr2	62652778	62653778	+	553.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-7023.0	NM_001164477	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22498304-1	chr16	22497804	22498804	+	553.0	f1_balb.idr	intron (NM_001346673, intron 21 of 23)	intron (NM_001346673, intron 21 of 23)	-13176.0	NR_130988	78082.0	Mm.243927	NR_130988	ENSMUSG00000089874	9230117E06Rik	-	RIKEN cDNA 9230117E06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7493474-1	chr19	7492974	7493974	+	553.0	f0_balb.idr	promoter-TSS (NM_146091)	promoter-TSS (NM_146091)	-566.0	NM_001163505	109168.0	Mm.264016	NM_146091	ENSMUSG00000024759	Atl3	4633402C03Rik|5730596K20Rik|AI465397|AW228836	atlastin GTPase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-9394552-1	chr14	9394052	9395052	+	553.0	f1_balb.idr	Intergenic	Intergenic	-489543.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129543982-1	chr6	129543482	129544482	+	553.0	f1_balb.idr	Intergenic	Intergenic	-10698.0	NR_045270	100504641.0	Mm.398286	NR_045270	ENSMUSG00000097675	1700101I11Rik	-	RIKEN cDNA 1700101I11 gene	ncRNA	6.0	7.0	2.5	6.0	7.5	3.5
Merged-chr5-62364948-2	chr5	62364448	62365448	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	401229.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31194068-1	chr16	31193568	31194568	+	553.0	f0_balb.idr	intron (NM_030138, intron 1 of 22)	Tigger7|DNA|TcMar-Tigger	7170.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52743702-2	chr2	52743202	52744202	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-1553.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152608126-2	chr1	152607626	152608626	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	17091.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-106493984-1	chr3	106493484	106494484	+	553.0	f1_c57bl6.idr	intron (NM_001093754, intron 7 of 11)	intron (NM_001093754, intron 7 of 11)	7944.0	NM_028110	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	4.5	0.5	0.5	0.0	4.0	7.5
Merged-chr14-102807724-2	chr14	102807224	102808224	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	174908.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143037286-1	chr5	143036786	143037786	+	553.0	f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	75734.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-72469067-1	chr8	72468567	72469567	+	553.0	f1_c57bl6.idr	TTS (NR_106036)	TTS (NR_106036)	1022.0	NR_106036	102465647.0		NR_106036	ENSMUSG00000099079	Mir7068	Gm27570|mmu-mir-7068	microRNA 7068	ncRNA	0.0	1.5	0.0	3.5	6.5	4.0
Merged-chr1-97781846-1	chr1	97781346	97782346	+	553.0	f1_c57bl6.idr	intron (NM_001310773, intron 3 of 7)	intron (NM_001310773, intron 3 of 7)	11674.0	NM_001310773	252876.0	Mm.86090	NM_026250	ENSMUSG00000026333	Gin1	4930429M06Rik|8430411H10Rik|Gin-1|Zh2c2	gypsy retrotransposon integrase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62488811-1	chr9	62488311	62489311	+	553.0	f0_balb.idr	intron (NM_175484, intron 2 of 11)	intron (NM_175484, intron 2 of 11)	48233.0	NM_175484	235431.0	Mm.335229	NM_175484	ENSMUSG00000041729	Coro2b	CLIPINC|E130012P22Rik	coronin, actin binding protein, 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-89371112-1	chr7	89370612	89371612	+	553.0	f0_balb.idr	intron (NM_001360746, intron 1 of 14)	intron (NM_001360746, intron 1 of 14)	-32325.0	NM_001360745	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-129085227-1	chr2	129084727	129085727	+	553.0	f1_balb.idr	intron (NM_027192, intron 5 of 6)	intron (NM_027192, intron 5 of 6)	-15769.0	NM_009086	20017.0	Mm.259078	NM_009086	ENSMUSG00000027395	Polr1b	128kDa|D630020H17Rik|RPA116|RPA135|RPA2|Rpo1-2	polymerase (RNA) I polypeptide B	protein-coding	0.0	3.5	1.5	2.5	1.5	2.0
Merged-chr3-22062141-1	chr3	22061641	22062641	+	553.0	f0_c57.idr	Intergenic	Intergenic	-14511.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25476045-2	chr14	25475545	25476545	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	16860.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81329414-2	chr10	81328914	81329914	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277265, intron 1 of 2)	intron (NM_001277265, intron 1 of 2)	711.0	NM_001277265	21390.0	Mm.4545	NM_009325	ENSMUSG00000034881	Tbxa2r	TP|TXA2-R	thromboxane A2 receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38963841-2	chr6	38963341	38964341	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	L1MB4|LINE|L1	44855.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35378089-2	chr8	35377589	35378589	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177741, intron 1 of 1)	intron (NM_177741, intron 1 of 1)	2348.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	6.5	12.0	7.5	2.0	1.0	3.0
Merged-chr19-4102557-1	chr19	4102057	4103057	+	553.0	f1_c57bl6.idr	intron (NM_008851, intron 1 of 22)	B3|SINE|B2	1935.0	NM_008851	18739.0	Mm.1860	NM_008851	ENSMUSG00000024851	Pitpnm1	DRES9|Mpt-1|Nir-2|PITPnm 1|Pitpnm|R75447|Rd9|RdgB|RdgB1	phosphatidylinositol transfer protein, membrane-associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-72317103-1	chr1	72316603	72317603	+	553.0	f0_balb.idr	intron (NM_001357519, intron 5 of 20)	intron (NM_001357519, intron 5 of 20)	9682.0	NM_001357519	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67614599-1	chr17	67614099	67615099	+	553.0	f0_balb.idr	intron (NR_155516, intron 2 of 2)	intron (NR_155516, intron 2 of 2)	14733.0	NR_155516	102640031.0	Mm.421441	NR_155516		Gm36201	-	predicted gene, 36201	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134531290-2	chr5	134530790	134531790	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039162, intron 2 of 15)	intron (NM_001039162, intron 2 of 15)	21144.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52818958-1	chr13	52818458	52819458	+	553.0	f0_balb.idr	Intergenic	Intergenic	-61753.0	NR_027893	105404.0	Mm.184173	NR_027893		BB123696	-	expressed sequence BB123696	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22940214-2	chr8	22939714	22940714	+	553.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081149, exon 18 of 18)	exon (NM_001081149, exon 18 of 18)	-34622.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-54040779-1	chr5	54040279	54041279	+	553.0	f0_balb.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	42256.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61972254-2	chr14	61971755	61972755	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-289882.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	18.0	18.5	10.0	2.0	10.0	2.5
Merged-chr5-36474513-1	chr5	36474013	36475013	+	553.0	f1_c57bl6.idr	TTS (NM_024478)	TTS (NM_024478)	9328.0	NM_024478	17713.0	Mm.21535	NM_024478	ENSMUSG00000029198	Grpel1	AA408748|mt-GrpE#1|mt-Grpel1	GrpE-like 1, mitochondrial	protein-coding	2.0	4.0	0.5	0.0	0.0	1.5
Merged-chr17-86323064-1	chr17	86322564	86323564	+	553.0	f1_balb.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	-35886.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	2.5	0.0	1.0	9.0	0.0	1.0
Merged-chr9-6102932-1	chr9	6102432	6103432	+	553.0	f1_c57bl6.idr	Intergenic	Intergenic	-65554.0	NM_001357398	71785.0	Mm.390122	NM_027924	ENSMUSG00000032006	Pdgfd	1110003I09Rik	platelet-derived growth factor, D polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27197007-1	chr3	27196507	27197507	+	553.0	f1_balb.idr	intron (NM_178772, intron 1 of 4)	ID_B1|SINE|B4	14003.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-105776755-2	chr7	105776255	105777255	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162943, intron 1 of 20)	B4A|SINE|B4	10795.0	NM_001162943	233651.0	Mm.334108	NM_001162943	ENSMUSG00000036862	Dchs1	3110041P15Rik|C130033F22Rik|CDH25|FIB1|Gm165|PCDH16	dachsous cadherin related 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61744283-1	chr8	61743783	61744783	+	553.0	f1_c57bl6.idr	intron (NM_001293772, intron 2 of 21)	ID_B1|SINE|B4	15815.0	NM_001293773	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-30559747-1	chr17	30559247	30560247	+	553.0	f0_c57.idr	intron (NM_172618, intron 1 of 11)	intron (NM_172618, intron 1 of 11)	16540.0	NM_172618	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	3.0	2.0	0.5	4.5	0.0	2.0
Merged-chr11-116145587-2	chr11	116145138	116146138	+	553.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172571, exon 28 of 31)	exon (NM_172571, exon 28 of 31)	-6770.0	NM_024177	60441.0	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	14.5	9.5	8.0	15.0	17.5	21.5
Merged-chr3-69155544-1	chr3	69155044	69156044	+	553.0	f1_balb.idr	intron (NR_126533, intron 2 of 2)	intron (NR_126533, intron 2 of 2)	24311.0	NR_126533	381452.0	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	31.0	67.0	38.5	36.0	47.5	29.0
Merged-chr9-118637023-2	chr9	118636523	118637523	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	MIR3|SINE|MIR	30314.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13679369-2	chr8	13678869	13679869	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1782.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-71899249-2	chr9	71898749	71899749	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253865, intron 3 of 14)	intron (NM_001253865, intron 3 of 14)	-3153.0	NM_001253863	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr3-87790258-2	chr3	87789758	87790758	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033124, intron 3 of 16)	intron (NM_001033124, intron 3 of 16)	4904.0	NM_001033124	18211.0	Mm.80682	NM_001033124	ENSMUSG00000028072	Ntrk1	C80751|Tkr|TrkA|trk	neurotrophic tyrosine kinase, receptor, type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-48602831-1	chr6	48602331	48603331	+	553.0	f1_balb.idr	Intergenic	Intergenic	8948.0	NM_001079904	58887.0	Mm.219183	NM_175099	ENSMUSG00000052751	Repin1	AI425994|Ap4|E430037F08Rik|Zfp-464|Zfp464	replication initiator 1	protein-coding	10.0	9.5	1.0	7.0	0.5	8.0
Merged-chr8-94368197-2	chr8	94367697	94368697	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18232.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25562337-1	chr15	25561837	25562837	+	553.0	f0_balb.idr	Intergenic	Intergenic	-60213.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88332714-2	chr3	88332214	88333214	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024246, intron 2 of 3)	intron (NM_024246, intron 2 of 3)	1719.0	NM_024246	71913.0	Mm.34256	NM_024246	ENSMUSG00000001420	Tmem79	2310042N02Rik|2310074C17Rik|Matt|ma	transmembrane protein 79	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22112314-2	chr9	22111814	22112814	+	553.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_170777)	TTS (NM_170777)	1699.0	NR_106052	102466221.0		NR_106052	ENSMUSG00000098646	Mir7084	Gm27978|mmu-mir-7084	microRNA 7084	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8998968-1	chr3	8998468	8999468	+	553.0	f1_balb.idr	intron (NM_009412, intron 1 of 5)	B1_Mur4|SINE|Alu	5236.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	28.0	57.0	46.5	20.5	70.5	41.0
Merged-chr1-144256627-3	chr1	144256172	144257172	+	552.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7568.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5593198-2	chr18	5592698	5593698	+	552.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033552)	promoter-TSS (NR_033552)	551.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45360946-2	chr7	45360446	45361446	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029741, intron 2 of 29)	intron (NM_029741, intron 2 of 29)	-5215.0	NR_015480	50994.0	Mm.389897	NM_016664	ENSMUSG00000091510	Mtag2	MAG	metastasis associated gene 2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-39298880-2	chr18	39298380	39299380	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 19 of 21)	intron (NM_001361073, intron 19 of 21)	188365.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35167296-2	chr17	35166796	35167796	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2419.0	NM_020027	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149557984-2	chr4	149557484	149558484	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023465, intron 4 of 4)	intron (NM_023465, intron 4 of 4)	12867.0	NM_001141930	67087.0	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	0.0	2.5	3.0	0.0	0.0	0.0
Merged-chr2-144008559-2	chr2	144008059	144009059	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	2704.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-38686819-2	chr19	38686319	38687319	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019588, intron 3 of 31)	intron (NM_019588, intron 3 of 31)	132418.0	NM_021315	57753.0	Mm.86482	NM_021315	ENSMUSG00000024999	Noc3l	AF233884|Fad24	NOC3 like DNA replication regulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97871741-2	chr15	97871241	97872241	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009504, intron 4 of 9)	intron (NM_009504, intron 4 of 9)	-27239.0	NM_001204278	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100130580-2	chr12	100130080	100131080	+	552.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_183155, exon 11 of 14)	exon (NM_183155, exon 11 of 14)	18249.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-85422552-2	chr14	85422052	85423052	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4-int|LTR|ERVL-MaLR	-823418.0	NR_040457	75155.0	Mm.399239	NR_040457	ENSMUSG00000115271	4930529K09Rik	4930507G21Rik	RIKEN cDNA 4930529K09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-108748835-2	chr8	108748335	108749335	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	34191.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr2-45188109-2	chr2	45187609	45188609	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70667.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134545711-2	chr4	134545211	134546211	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029100, intron 3 of 11)	intron (NM_029100, intron 3 of 11)	6455.0	NM_029100	74777.0	Mm.29773	NM_029100	ENSMUSG00000050989	Selenon	1110019I12Rik|AI414492|SelN|Sepn1	selenoprotein N	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-114143607-2	chr7	114143107	114144107	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25826.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-179624623-2	chr1	179624123	179625123	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146105, intron 10 of 10)	RSINE1|SINE|B4	-43608.0	NM_178653	109232.0	Mm.136458	NM_178653	ENSMUSG00000038936	Sccpdh	AW214504|C330023F11Rik	saccharopine dehydrogenase (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70439038-2	chr8	70438538	70439538	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004062, intron 1 of 13)	intron (NM_001004062, intron 1 of 13)	535.0	NM_001004062	382056.0	Mm.227767	NM_001004062	ENSMUSG00000003575	Crtc1	AI413414|Mect1|R74955|TORC1|mKIAA0616	CREB regulated transcription coactivator 1	protein-coding	0.0	0.0	0.0	0.5	0.5	0.0
Merged-chr14-69734801-2	chr14	69734301	69735301	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_130157, intron 1 of 2)	intron (NR_130157, intron 1 of 2)	1967.0	NR_130157	75016.0	Mm.394574	NR_130157	ENSMUSG00000097284	4930480K23Rik	-	RIKEN cDNA 4930480K23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180257793-2	chr1	180257293	180258293	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1493.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3622036-2	chr4	3621536	3622536	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34470.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57711966-2	chr6	57711466	57712466	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133737, intron 1 of 8)	intron (NM_133737, intron 1 of 8)	9511.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21774930-2	chr9	21774430	21775430	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145611, intron 7 of 11)	PB1D10|SINE|Alu	-14627.0	NM_001357331	67629.0	Mm.295642	NM_026282	ENSMUSG00000074476	Spc24	2410030K01Rik|AV109292|Spbc24	SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-16357787-2	chr2	16357270	16358270	+	552.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_026162, intron 1 of 13)	intron (NM_026162, intron 1 of 13)	1466.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-152170236-2	chr4	152169736	152170736	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7864.0	NM_133348	70025.0	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117785462-2	chr11	117784962	117785962	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195090, intron 7 of 15)	PB1D9|SINE|Alu	2804.0	NM_001195088	217356.0	Mm.116675	NM_181856	ENSMUSG00000050106	Tmc8	EVIN2|Ever2|mFLJ00400	transmembrane channel-like gene family 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-133494717-2	chr2	133494217	133495217	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57442.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-97560596-2	chr16	97560096	97561096	+	552.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_003508, exon 14 of 14)	non-coding (NR_003508, exon 14 of 14)	24513.0	NM_013606	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-44996319-2	chr2	44995819	44996819	+	552.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001355289, exon 9 of 11)	exon (NM_001355289, exon 9 of 11)	26858.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-4148061-2	chr7	4147561	4148561	+	552.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175529)	TTS (NM_175529)	1811.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120608457-2	chr1	120607957	120608957	+	552.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010133)	TTS (NM_010133)	5970.0	NM_010133	13798.0	Mm.2657	NM_010133	ENSMUSG00000058665	En1	En-1|Mo-en.1|engrailed-1	engrailed 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53418664-2	chr19	53418164	53419164	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A|LTR|ERVK	-28030.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102487397-2	chr4	102486897	102487897	+	552.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_019840, exon 2 of 15)	exon (NM_019840, exon 2 of 15)	-82663.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-144296477-2	chr1	144295954	144296954	+	552.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47350.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117082514-2	chr11	117082014	117083014	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5166.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-99181370-2	chr11	99180870	99181870	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26293.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70658727-2	chr11	70658227	70659227	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136062, intron 5 of 11)	intron (NM_001136062, intron 5 of 11)	1551.0	NM_007933	13808.0	Mm.251322	NM_007933	ENSMUSG00000060600	Eno3	Eno-3|MSE	enolase 3, beta muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16819946-2	chr7	16819446	16820446	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039878, intron 1 of 17)	intron (NM_001039878, intron 1 of 17)	-3214.0	NM_173430	243853.0	Mm.39703	NM_173430	ENSMUSG00000048920	Fkrp	A830029B19Rik|AI842067|AI847300|LGMD1I|MDC1C	fukutin related protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-109253840-2	chr4	109253340	109254340	+	552.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001285895, exon 9 of 9)	exon (NM_001285895, exon 9 of 9)	18208.0	NM_001033226	108802.0	Mm.318248	NM_001033226	ENSMUSG00000028558	Calr4	4933403L16Rik|AU017583	calreticulin 4	protein-coding	7.0	0.5	0.0	1.0	0.5	3.5
Merged-chr16-94720972-2	chr16	94720472	94721472	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109553.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84152099-2	chr12	84151599	84152599	+	552.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163502, exon 13 of 13)	3' UTR (NM_001163502, exon 13 of 13)	-3610.0	NM_027438	70481.0	Mm.444348	NM_027438	ENSMUSG00000054383	Pnma1	5730402C15Rik	paraneoplastic antigen MA1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-86171632-2	chr5	86171132	86172132	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172712, intron 1 of 32)	intron (NM_172712, intron 1 of 32)	1111.0	NM_172712	231380.0	Mm.34012	NM_172712	ENSMUSG00000035898	Uba6	4930542H01|5730469D23Rik|AU021846|AW124799|E1-L2|Ube1l2	ubiquitin-like modifier activating enzyme 6	protein-coding	3.5	2.5	6.0	6.0	3.5	2.0
Merged-chr17-74306396-2	chr17	74305896	74306896	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146224, intron 3 of 3)	(TTTA)n|Simple_repeat|Simple_repeat	9815.0	NM_001146224	66310.0	Mm.28536	NM_024428	ENSMUSG00000024067	Dpy30	2810410M20Rik|C87842	dpy-30, histone methyltransferase complex regulatory subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53861181-2	chr11	53860681	53861681	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1925.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8617971-2	chr3	8617471	8618471	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-10080.0	NR_153352	102635065.0		NR_153352	ENSMUSG00000104102	Gm32496	-	predicted gene, 32496	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124522420-2	chr2	124521920	124522920	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-87876.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111456515-2	chr12	111456015	111457015	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13854.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-162564419-2	chr1	162563919	162564919	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6096.0	NM_001356527	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	9.0	13.0	13.0	3.5	4.5	19.5
Merged-chr19-37209776-2	chr19	37209276	37210276	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027314, intron 1 of 5)	Lx8|LINE|L1	2231.0	NM_001164336	69104.0	Mm.175989	NM_027314	ENSMUSG00000023307	March5	1810015H18Rik|2310008I22Rik|2700055A20Rik|5730499H23Rik|E130202O05Rik|MARCH-V|MITOL|Marchv|Rnf153	membrane-associated ring finger (C3HC4) 5	protein-coding	9.0	2.0	1.5	7.5	2.0	1.5
Merged-chr13-21509073-2	chr13	21508574	21509574	+	552.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-2550.0	NR_026798	100038371.0	Mm.133328	NR_026798		Zfp389	-	zinc finger protein 389	pseudo	12.0	0.0	11.5	11.5	3.0	8.0
Merged-chr5-87311406-2	chr5	87310906	87311906	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR46A|LTR|ERVK	25789.0	NM_028094	72094.0	Mm.482739	NM_028094	ENSMUSG00000035780	Ugt2a3	2010321J07Rik	UDP glucuronosyltransferase 2 family, polypeptide A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79550208-2	chr8	79549708	79550708	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89468.0	NM_001256033	73945.0	Mm.34348	NM_001081164	ENSMUSG00000036990	Otud4	4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046	OTU domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9022639-2	chr3	9022139	9023139	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER68-int|LTR|ERVL	-17916.0	NM_001357075	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0.0	0.5	0.0	0.5	0.0	1.0
Merged-chr9-107965144-2	chr9	107964644	107965644	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011634, intron 10 of 14)	intron (NM_011634, intron 10 of 14)	-10423.0	NM_023738	74153.0	Mm.277125	NM_023738	ENSMUSG00000032596	Uba7	1300004C08Rik|Ube1l	ubiquitin-like modifier activating enzyme 7	protein-coding	0.0	0.0	1.5	3.5	1.0	2.5
Merged-chr16-33169597-2	chr16	33169097	33170097	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-15474.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-85800540-2	chr17	85800040	85801040	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-112286.0	NM_011380	20472.0	Mm.5039	NM_011380	ENSMUSG00000024134	Six2	-	sine oculis-related homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87654887-2	chr1	87654387	87655387	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	L1MC4|LINE|L1	34575.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126511375-2	chr8	126510875	126511875	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36310.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141439208-2	chr7	141438708	141439708	+	552.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001360523, exon 15 of 16)	exon (NM_001360523, exon 15 of 16)	-1334.0	NM_001360724	68267.0	Mm.33729	NM_026646	ENSMUSG00000019082	Slc25a22	1300006L01Rik|AI060884|Gc1	solute carrier family 25 (mitochondrial carrier, glutamate), member 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-177940660-2	chr1	177940160	177941160	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50738.0	NR_155538	545391.0	Mm.442974	NM_001034899	ENSMUSG00000091476	Gm16432	EG545391|EG666250	predicted gene 16432	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-34931614-2	chr16	34931114	34932114	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139300, intron 17 of 31)	intron (NM_139300, intron 17 of 31)	7715.0	NR_040536	76649.0	Mm.420532	NR_040536	ENSMUSG00000100593	1700119H24Rik	-	RIKEN cDNA 1700119H24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54100424-2	chr11	54099924	54100924	+	552.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011031)	promoter-TSS (NM_011031)	-500.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-98086856-2	chr6	98086356	98087356	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	95073.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82866972-1	chr18	82866472	82867472	+	552.0	f0_balb.idr	Intergenic	Intergenic	11075.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97280200-1	chr6	97279700	97280700	+	552.0	f1_c57bl6.idr	Intergenic	Intergenic	-27420.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	2.0	7.5	10.5	2.0	10.0	5.5
Merged-chr3-159495895-2	chr3	159495395	159496395	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172092, intron 1 of 11)	intron (NM_001172092, intron 1 of 11)	462.0	NM_001172092	76131.0	Mm.371655	NM_029523	ENSMUSG00000028175	Depdc1a	5830484J08Rik|Depdc1	DEP domain containing 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99329269-2	chr15	99328769	99329769	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310623, intron 5 of 24)	intron (NM_001310623, intron 5 of 24)	25985.0	NM_001348256	54614.0	Mm.358668	NM_018786	ENSMUSG00000023007	Prpf40b	2610317D23Rik|Hypc	pre-mRNA processing factor 40B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-90697984-1	chr11	90697484	90698484	+	552.0	f0_balb.idr	Intergenic	Intergenic	-10383.0	NM_001357543	71943.0	Mm.167868	NM_028011	ENSMUSG00000020541	Tom1l1	2310045L10Rik|C80573|Srcasm	target of myb1-like 1 (chicken)	protein-coding	0.0	2.5	0.0	0.0	3.5	1.5
Merged-chr16-53694679-1	chr16	53694179	53695179	+	552.0	f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-878935.0	NR_040495	73820.0	Mm.60493	NR_040495		4930404A05Rik	-	RIKEN cDNA 4930404A05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-26771837-1	chr10	26771337	26772337	+	552.0	f1_balb.idr	promoter-TSS (NM_176837)	promoter-TSS (NM_176837)	-675.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.0	2.0	0.0	4.5	4.5	5.0
Merged-chr8-94802004-1	chr8	94801504	94802504	+	552.0	f1_balb.idr	Intergenic	L2|LINE|L2	-8449.0	NM_011332	20295.0	Mm.41988	NM_011332	ENSMUSG00000031780	Ccl17	Abcd-2|Scya17|Scya17l|Tarc	chemokine (C-C motif) ligand 17	protein-coding	1.0	0.0	8.5	0.0	0.0	3.0
Merged-chr8-121665583-2	chr8	121665083	121666083	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13650.0	NM_080855	142682.0	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-124998022-2	chr4	124997522	124998522	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138683, intron 2 of 5)	intron (NM_138683, intron 2 of 5)	11592.0	NM_138683	192199.0	Mm.42202	NM_138683	ENSMUSG00000028871	Rspo1	R-spondin|Rspondin	R-spondin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111973652-1	chr10	111973152	111974152	+	552.0	f1_c57bl6.idr	intron (NM_178610, intron 1 of 9)	intron (NM_178610, intron 1 of 9)	957.0	NM_178610	52705.0	Mm.34606	NM_178610	ENSMUSG00000063334	Krr1	2610511F02Rik|AI255219|AI428520|D10Ertd773e|Hrb2	KRR1, small subunit (SSU) processome component, homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-63020001-2	chr2	63019501	63020501	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133207, intron 2 of 15)	intron (NM_133207, intron 2 of 15)	164286.0	NM_133207	170738.0	Mm.242532	NM_133207	ENSMUSG00000059742	Kcnh7	9330137I11Rik|Kv11.3|erg3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-22872485-2	chr11	22871982	22872982	+	552.0	f0_balb.idr|f1_balb.idr	Intergenic	RMER15|LTR|ERVL	-12146.0	NM_001169114	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62045968-1	chr15	62045468	62046468	+	552.0	f1_balb.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	6711.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-13164947-2	chr2	13164447	13165447	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009105, intron 8 of 8)	intron (NM_009105, intron 8 of 8)	106468.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31759155-1	chr2	31758655	31759655	+	552.0	f1_balb.idr	promoter-TSS (NM_009594)	promoter-TSS (NM_009594)	-784.0	NM_009594	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64338494-1	chr5	64337994	64338994	+	552.0	f1_c57bl6.idr	intron (NM_001289514, intron 16 of 18)	intron (NM_001289514, intron 16 of 18)	108137.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	36.0	63.0	43.0	34.0	34.0	18.5
Merged-chr11-117118113-2	chr11	117117613	117118613	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 2 of 16)	4.5SRNA|scRNA|scRNA	2941.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140162753-1	chr5	140162253	140163253	+	552.0	f0_balb.idr	intron (NR_152617, intron 11 of 16)	ORR1E|LTR|ERVL-MaLR	12165.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99223585-2	chr15	99223085	99224085	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1391.0	NM_010601	16512.0	Mm.374793	NM_010601	ENSMUSG00000037579	Kcnh3	AU019351|C030044P22Rik|Elk2|Kv12.2|Melk2	potassium voltage-gated channel, subfamily H (eag-related), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140841686-2	chr5	140841186	140842186	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11255.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	4.0	6.0	3.0	10.0	7.0	6.5
Merged-chr9-65197383-2	chr9	65196883	65197883	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17307.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97198800-1	chr11	97198300	97199300	+	552.0	f1_c57bl6.idr	Intergenic	B3|SINE|B2	-10908.0	NM_008379	16211.0	Mm.251013	NM_008379	ENSMUSG00000001440	Kpnb1	AA409963|IPOB|Impnb	karyopherin (importin) beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37693781-2	chr13	37693281	37694281	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132257.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21440018-1	chr5	21439518	21440518	+	552.0	f1_c57bl6.idr	intron (NM_177869, intron 4 of 7)	intron (NM_177869, intron 4 of 7)	15115.0	NM_177869	330050.0	Mm.40655	NM_177869	ENSMUSG00000047221	Fam185a	4631428I10|AI847670	family with sequence similarity 185, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-132318334-2	chr7	132317834	132318834	+	552.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_028578)	TTS (NR_028578)	-1106.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87750418-1	chr3	87749918	87750918	+	552.0	f1_c57bl6.idr	intron (NM_001032413, intron 23 of 23)	intron (NM_001032413, intron 23 of 23)	-1795.0	NM_028971	74485.0	Mm.474494	NM_028971	ENSMUSG00000023084	Lrrc71	4933430H15Rik	leucine rich repeat containing 71	protein-coding	3.5	0.0	6.0	0.0	0.0	1.0
Merged-chr11-93999261-1	chr11	93998761	93999761	+	552.0	f1_balb.idr	intron (NM_027569, intron 1 of 28)	B2_Mm2|SINE|B2	3170.0	NM_027569	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	5.0	5.0	6.0	8.0	6.5	3.5
Merged-chr18-50097571-1	chr18	50097071	50098071	+	552.0	f1_c57bl6.idr	Intergenic	Intergenic	-30630.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	110.0	219.0	165.5	92.5	91.0	89.0
Merged-chr13-44918214-2	chr13	44917714	44918714	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205043, intron 17 of 17)	intron (NM_001205043, intron 17 of 17)	83882.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-40748763-2	chr19	40748263	40749263	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82516.0	NM_172839	240665.0	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-42959701-1	chr4	42959201	42960201	+	552.0	f1_c57bl6.idr	TTS (NM_001355440)	TTS (NM_001355440)	9305.0	NM_001355440	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	0.0	4.5	2.5	1.0	8.5	5.0
Merged-chr11-21242394-1	chr11	21241894	21242894	+	552.0	f1_c57bl6.idr	intron (NM_001290628, intron 1 of 22)	intron (NM_001290628, intron 1 of 22)	3362.0	NM_001290628	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	34.0	70.5	47.5	19.0	33.0	39.5
Merged-chr2-31083651-2	chr2	31083151	31084151	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 5 of 15)	B4A|SINE|B4	12849.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43800737-1	chr5	43800237	43801237	+	552.0	f1_balb.idr	Intergenic	Lx8b|LINE|L1	-18156.0	NM_009763	12182.0	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	2.5	1.0	2.5	0.0	10.5	1.0
Merged-chr10-62255787-2	chr10	62255287	62256287	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009314, intron 1 of 4)	intron (NM_009314, intron 1 of 4)	3349.0	NM_009314	21337.0	Mm.8054	NM_009314	ENSMUSG00000020081	Tacr2	Nk2r|Skr|Tac2r	tachykinin receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13495270-1	chr9	13494770	13495770	+	552.0	f1_balb.idr	Intergenic	Intergenic	63909.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	4.0	7.0	5.5	7.5	3.5	9.5
Merged-chr4-141248042-1	chr4	141247542	141248542	+	552.0	f0_balb.idr	exon (NM_172520, exon 7 of 17)	exon (NM_172520, exon 7 of 17)	5158.0	NM_172520	213649.0	Mm.134460	NM_172520	ENSMUSG00000028919	Arhgef19	6030432F23|6430573B13Rik|WGEF	Rho guanine nucleotide exchange factor (GEF) 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-119896209-1	chr14	119895709	119896709	+	552.0	f1_c57bl6.idr	Intergenic	Intergenic	146226.0	NM_001001490	239283.0	Mm.138520	NM_001001490	ENSMUSG00000044819	Oxgr1	Cysltr3|Gm299|Gpr80|Gpr99|P2Y15	oxoglutarate (alpha-ketoglutarate) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27590963-2	chr15	27590463	27591463	+	552.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_020332, exon 10 of 12)	exon (NM_020332, exon 10 of 12)	19469.0	NR_106065	102466808.0		NR_106065	ENSMUSG00000098416	Mir7117	Gm27729|mmu-mir-7117	microRNA 7117	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-26440794-2	chr14	26440294	26441294	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 14 of 22)	intron (NM_001310445, intron 14 of 22)	83247.0	NR_038005	71106.0	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167499255-1	chr2	167498755	167499755	+	552.0	f1_balb.idr	intron (NM_030743, intron 1 of 7)	URR1A|DNA|hAT-Charlie	-4188.0	NR_153838	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-52040185-1	chr16	52039685	52040685	+	552.0	f0_balb.idr	intron (NM_001033238, intron 2 of 17)	intron (NM_001033238, intron 2 of 17)	8636.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-67239515-1	chr7	67239015	67240015	+	552.0	f1_c57bl6.idr	intron (NM_001357324, intron 10 of 11)	intron (NM_001357324, intron 10 of 11)	16899.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-40139562-2	chr4	40139062	40140062	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3703.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43034661-2	chr4	43034161	43035161	+	552.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001253353, exon 5 of 9)	exon (NM_001253353, exon 5 of 9)	-3277.0	NM_023231	66592.0	Mm.331565	NM_023231	ENSMUSG00000028455	Stoml2	0610038F01Rik|MSLP2|SLP-2	stomatin (Epb7.2)-like 2	protein-coding	0.0	0.0	1.0	3.0	2.0	0.0
Merged-chr1-57574716-1	chr1	57574216	57575216	+	552.0	f0_balb.idr	Intergenic	Intergenic	-168042.0	NM_001302963	68736.0	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	0.5	2.5	0.5	0.0	0.0	0.5
Merged-chr7-44140637-1	chr7	44140137	44141137	+	552.0	f0_balb.idr	exon (NM_008454, exon 3 of 5)	exon (NM_008454, exon 3 of 5)	3347.0	NM_008454	16615.0	Mm.440887	NM_008454	ENSMUSG00000038968	Klk1b16	Klk16|mGk-16	kallikrein 1-related peptidase b16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-104232002-1	chr12	104231502	104232502	+	552.0	f1_balb.idr	intron (NM_009251, intron 3 of 6)	intron (NM_009251, intron 3 of 6)	-4145.0	NM_001353612	20715.0	Mm.312628	NM_009251		Serpina3g	2A2|AI119734|Spi2-1|Spi2/eb.1|Spi2A|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3G	protein-coding	17.5	61.5	48.0	5.0	25.0	25.0
Merged-chr15-22840783-1	chr15	22840283	22841283	+	552.0	f1_balb.idr	Intergenic	Lx3A|LINE|L1	-125799.0	NM_001165971	545091.0	Mm.475598	NM_001165971		Hnrnpa1l2-ps2	EG545091|Gm5803	heterogeneous nuclear ribonucleoprotein A1-like 2, pseudogene 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr7-96421445-2	chr7	96420945	96421945	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 2 of 32)	intron (NM_011858, intron 2 of 32)	-79481.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-33915388-1	chr17	33914888	33915888	+	552.0	f1_c57bl6.idr	promoter-TSS (NM_020625)	promoter-TSS (NM_020625)	-788.0	NM_020625	81630.0	Mm.482096	NM_020625	ENSMUSG00000051390	Zbtb22	1110008J20Rik|AI265210|AI415166|Bing1|Zfp297	zinc finger and BTB domain containing 22	protein-coding	0.0	13.0	8.5	12.0	34.5	8.0
Merged-chr11-84913832-2	chr11	84913332	84914332	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359182, intron 3 of 4)	intron (NM_001359182, intron 3 of 4)	2534.0	NM_001359182	448850.0	Mm.379733	NM_001005223	ENSMUSG00000020526	Znhit3	Myohd1|TRIP-3|Trip3	zinc finger, HIT type 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-45326791-2	chr13	45326291	45327291	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-62951.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88623075-2	chr3	88622582	88623582	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 1 of 21)	intron (NM_001198913, intron 1 of 21)	1688.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	9.5	63.0	36.5	39.0	73.0	37.5
Merged-chr10-122797586-1	chr10	122797086	122798086	+	552.0	f1_balb.idr	intron (NM_001110218, intron 2 of 9)	intron (NM_001110218, intron 2 of 9)	118271.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0.5	5.0	7.0	1.0	7.0	5.0
Merged-chr11-121296975-2	chr11	121296475	121297475	+	552.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001080932, exon 6 of 9)	exon (NM_001080932, exon 6 of 9)	36988.0	NM_001080932	68837.0	Mm.209750	NM_001080932	ENSMUSG00000039275	Foxk2	1110054H05Rik|5730434B08Rik|6230415M23Rik|ILF|Ilf1	forkhead box K2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61197839-2	chr10	61197339	61198339	+	552.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081127, exon 22 of 22)	3' UTR (NM_001081127, exon 22 of 22)	22577.0	NM_023064	65971.0	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-104218133-1	chr7	104217633	104218633	+	552.0	f0_balb.idr	promoter-TSS (NM_001013616)	promoter-TSS (NM_001013616)	-662.0	NM_001013616	94088.0	Mm.274843	NM_001013616	ENSMUSG00000072244	Trim6	C430046K18Rik|D7Ertd684e	tripartite motif-containing 6	protein-coding	0.5	2.0	0.0	0.5	2.0	0.0
Merged-chr3-19515713-1	chr3	19515213	19516213	+	552.0	f0_balb.idr	intron (NM_025489, intron 1 of 4)	intron (NM_025489, intron 1 of 4)	7118.0	NM_025489	66326.0	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29346973-2	chr17	29346473	29347473	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347335, intron 1 of 11)	intron (NM_001347335, intron 1 of 11)	354.0	NM_001357762	56462.0	Mm.3224	NM_019880	ENSMUSG00000024012	Mtch1	2310034O17Rik|AI255158|AU018396|C77849|PSAP	mitochondrial carrier 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-100688846-1	chr15	100688346	100689346	+	552.0	f1_c57bl6.idr	promoter-TSS (NM_033612)	promoter-TSS (NM_033612)	-926.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	0.0	0.0	0.0	2.0	0.0	0.0
Merged-chr5-134101743-1	chr5	134101243	134102243	+	552.0	f0_c57.idr	intron (NM_030719, intron 1 of 8)	intron (NM_030719, intron 1 of 8)	1995.0	NM_030719	80909.0	Mm.45218	NM_030719	ENSMUSG00000015944	Gatsl2	7530428J21Rik|AW742413|Castor2|Gats|Gatsl1	GATS protein-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-10373253-1	chr8	10372753	10373753	+	552.0	f0_balb.idr	intron (NM_001319151, intron 7 of 34)	intron (NM_001319151, intron 7 of 34)	219342.0	NM_001319151	244281.0	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117773955-2	chr8	117773455	117774455	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	28019.0	NM_001357233	68533.0	Mm.181836	NM_026758	ENSMUSG00000031843	Mphosph6	1110001M01Rik|AA536809|C86426	M phase phosphoprotein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45185151-2	chr4	45184651	45185651	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081172, intron 1 of 15)	CpG	245.0	NM_001081172	666060.0	Mm.24783	NM_001081172	ENSMUSG00000035615	Frmpd1	BC031840|mKIAA0967	FERM and PDZ domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-58254779-2	chr10	58254279	58255279	+	552.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027375)	promoter-TSS (NM_027375)	-747.0	NM_027375	70297.0	Mm.25531	NM_027375	ENSMUSG00000038039	Gcc2	0610043A03Rik|2210420P05Rik|2600014C01Rik|AW112121|mKIAA0336	GRIP and coiled-coil domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-38088110-1	chr15	38087610	38088610	+	552.0	f1_c57bl6.idr	Intergenic	B4|SINE|B4	-9256.0	NM_001081359	70790.0	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-19626265-2	chr2	19625737	19626737	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	31660.0	NR_033642	100041244.0	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55328619-1	chr13	55328119	55329119	+	552.0	f1_balb.idr	exon (NM_016662, exon 3 of 6)	exon (NM_016662, exon 3 of 6)	1111.0	NM_016662	17121.0	Mm.20350	NM_016662	ENSMUSG00000021485	Mxd3	4631412E13Rik|Mad3|bHLHc13	Max dimerization protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69977742-2	chr11	69977242	69978242	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018740, intron 4 of 8)	intron (NM_018740, intron 4 of 8)	2588.0	NM_001253700	54351.0	Mm.13430	NM_018740	ENSMUSG00000018565	Elp5	Derp6|Rai12	elongator acetyltransferase complex subunit 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-76901143-2	chr8	76900643	76901643	+	552.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028579)	promoter-TSS (NR_028579)	-522.0	NR_028579	102640923.0	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	-	predicted gene 10649	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-69655569-1	chr13	69655069	69656069	+	552.0	f0_balb.idr	Intergenic	Lx6|LINE|L1	43553.0	NM_145354	28114.0	Mm.260009	NM_145354	ENSMUSG00000021595	Nsun2	D13Wsu123e|Misu	NOL1/NOP2/Sun domain family member 2	protein-coding	4.5	3.5	1.5	0.0	2.0	2.0
Merged-chr2-118539886-1	chr2	118539386	118540386	+	552.0	f1_c57bl6.idr	intron (NM_001331221, intron 3 of 3)	intron (NM_001331221, intron 3 of 3)	4701.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	88.5	133.5	91.0	23.0	59.5	38.0
Merged-chr5-122642233-2	chr5	122641733	122642733	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-1678.0	NM_001038839	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71490035-1	chr8	71489535	71490535	+	552.0	f1_balb.idr	intron (NM_032544, intron 3 of 8)	intron (NM_032544, intron 3 of 8)	1932.0	NM_032544	70359.0	Mm.142112	NM_032544	ENSMUSG00000007610	Gtpbp3	2410009F13Rik|AI607903	GTP binding protein 3	protein-coding	0.0	3.5	0.5	0.0	0.0	2.5
Merged-chr6-88184521-2	chr6	88184021	88185021	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9370.0	NM_001355253	14461.0	Mm.491156	NM_008090	ENSMUSG00000015053	Gata2	Gata-2	GATA binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-100270784-2	chr6	100270284	100271284	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019743, intron 2 of 4)	MIRc|SINE|MIR	16574.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113342654-1	chr6	113342154	113343154	+	552.0	f0_balb.idr	intron (NM_133926, intron 1 of 11)	intron (NM_133926, intron 1 of 11)	1268.0	NM_133926	52163.0	Mm.277373	NM_133926	ENSMUSG00000030272	Camk1	AI505105|CaMKIalpha|D6Ertd263e	calcium/calmodulin-dependent protein kinase I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-11907035-1	chr13	11906535	11907535	+	552.0	f0_balb.idr	intron (NM_023868, intron 3 of 104)	intron (NM_023868, intron 3 of 104)	199910.0	NM_023868	20191.0	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114640265-2	chr5	114639765	114640765	+	552.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_022017, exon 3 of 16)	exon (NM_022017, exon 3 of 16)	18156.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0.0	8.0	1.0	2.5	1.5	2.5
Merged-chr4-129740607-1	chr4	129740107	129741107	+	552.0	f1_balb.idr	intron (NM_011317, intron 1 of 8)	RLTR26B_MM|LTR|ERVK	1696.0	NM_011317	20218.0	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	0.0	3.5	3.5	0.0	4.5	2.0
Merged-chr16-30947956-1	chr16	30947456	30948456	+	552.0	f1_c57bl6.idr	Intergenic	Intergenic	133476.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	6.5	43.0	6.0	29.5	60.5	30.5
Merged-chr12-111745852-1	chr12	111745352	111746352	+	552.0	f0_balb.idr	intron (NM_001163388, intron 4 of 5)	RSINE1|SINE|B4	-12997.0	NM_001361612	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79593675-1	chr3	79593175	79594175	+	552.0	f1_balb.idr	exon (NM_026352, exon 2 of 10)	exon (NM_026352, exon 2 of 10)	2338.0	NM_026352	67738.0	Mm.295252	NM_026352	ENSMUSG00000027804	Ppid	4930564J03Rik|CYP-40|Ppidl|Ppif	peptidylprolyl isomerase D (cyclophilin D)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148764265-1	chr2	148763765	148764765	+	552.0	f0_balb.idr	Intergenic	Intergenic	7232.0	NM_030059	78240.0	Mm.99424	NM_030059	ENSMUSG00000036958	Cst11	9230101F08Rik|BB067629|CRES2|mCSTE1	cystatin 11	protein-coding	0.0	6.0	2.5	4.0	1.5	6.5
Merged-chr7-89235499-1	chr7	89234999	89235999	+	552.0	f0_balb.idr	intron (NM_001360746, intron 5 of 14)	intron (NM_001360746, intron 5 of 14)	103288.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124674126-2	chr2	124673626	124674626	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20545.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-17165471-2	chr11	17164971	17165971	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024459, intron 1 of 5)	URR1A|DNA|hAT-Charlie	6173.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34973789-1	chr13	34973289	34974289	+	552.0	f1_balb.idr	Intergenic	MT2A|LTR|ERVL	-9980.0	NM_026947	69123.0	Mm.482475	NM_026947	ENSMUSG00000021416	Eci3	1810022C23Rik|Kseg2	enoyl-Coenzyme A delta isomerase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78414181-2	chr10	78413681	78414681	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1138.0	NM_010925	18114.0	Mm.38344	NM_010925	ENSMUSG00000061032	Rrp1	AL033305|AL033306|AU018604|NNP-1|Nnp1	ribosomal RNA processing 1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-16211887-1	chr18	16211387	16212387	+	552.0	f1_c57bl6.idr	Intergenic	Intergenic	-493841.0	NM_199055	71367.0	Mm.329304	NM_199055	ENSMUSG00000047161	Chst9	5430438D01Rik	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-105732983-2	chr7	105732483	105733483	+	552.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025897, exon 7 of 7)	3' UTR (NM_025897, exon 7 of 7)	3601.0	NM_025897	101867.0	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116142113-1	chr11	116141613	116142613	+	552.0	f1_c57bl6.idr	TTS (NM_172571)	TTS (NM_172571)	-3245.0	NM_024177	60441.0	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	0.0	0.0	2.5	0.0	0.0	0.0
Merged-chr1-93809264-1	chr1	93808764	93809764	+	552.0	f1_balb.idr	intron (NM_025454, intron 2 of 7)	intron (NM_025454, intron 2 of 7)	5299.0	NM_025454	66262.0	Mm.64065	NM_025454	ENSMUSG00000026283	Ing5	1700001C14Rik|1700027H23Rik|1810018M11Rik|AI225768	inhibitor of growth family, member 5	protein-coding	2.0	0.0	1.0	0.0	0.0	0.0
Merged-chr2-79699133-1	chr2	79698633	79699633	+	552.0	f1_balb.idr	Intergenic	Intergenic	-8647.0	NM_172420	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-77329809-1	chr1	77329309	77330309	+	552.0	f0_balb.idr	Intergenic	Intergenic	166959.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	6.0	1.5	6.0	3.0	3.0	8.0
Merged-chr11-11770125-2	chr11	11769625	11770625	+	552.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001301868, exon 8 of 8)	3' UTR (NM_001301868, exon 8 of 8)	38837.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	3.5	0.0	0.0	0.0	0.0	0.5
Merged-chr9-108856192-2	chr9	108855692	108856692	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134420, intron 3 of 17)	intron (NM_134420, intron 3 of 17)	2149.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36051972-2	chr1	36051472	36052472	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16428.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-38482794-2	chr3	38482294	38483294	+	552.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001167883, exon 2 of 4)	exon (NM_001167883, exon 2 of 4)	2022.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-46962944-1	chr14	46962444	46963444	+	552.0	f1_balb.idr	intron (NM_001037221, intron 2 of 12)	ORR1D2|LTR|ERVL-MaLR	-8016.0	NR_105813	102465206.0		NR_105813	ENSMUSG00000099036	Mir378c	Gm27930|mmu-mir-378c	microRNA 378c	ncRNA	0.0	2.0	1.5	6.5	18.5	2.0
Merged-chr5-25774482-2	chr5	25773982	25774982	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310504, intron 1 of 10)	MER68B|LTR|ERVL	14509.0	NM_001004365	242894.0	Mm.150319	NM_001004365	ENSMUSG00000056367	Actr3b	9630005C02|ARP11|AW047569|Arp3b|Arp3beta	ARP3 actin-related protein 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40573402-2	chr12	40572902	40573902	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	127349.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-68491681-2	chr14	68491181	68492181	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTAGGG)n|Simple_repeat|Simple_repeat	42008.0	NM_007402	11500.0	Mm.261495	NM_007402	ENSMUSG00000022056	Adam7	ADAM 7|EAP1|EAPI	a disintegrin and metallopeptidase domain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-79880816-2	chr12	79880316	79881316	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43917.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118874712-1	chr9	118874212	118875212	+	552.0	f1_balb.idr	intron (NM_001113514, intron 11 of 13)	B3|SINE|B2	-51824.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	10.0	5.0	9.5	12.0	9.0	8.0
Merged-chr11-98004060-2	chr11	98003560	98004560	+	552.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001159320)	TTS (NM_001159320)	-7887.0	NR_152188	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79723578-1	chr15	79723078	79724078	+	552.0	f1_c57bl6.idr	TTS (NM_001205345)	TTS (NM_001205345)	18958.0	NM_194342	223697.0	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	5.5	1.0	11.0	5.5	1.0	0.0
Merged-chr10-111105974-2	chr10	111105474	111106474	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-58828.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-100408744-1	chr3	100408244	100409244	+	552.0	f1_balb.idr	Intergenic	RMER1A|Other|Other	-17661.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	6.0	4.5	3.5	6.0	4.5	3.5
Merged-chr16-38378768-2	chr16	38378268	38379268	+	552.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081984)	TTS (NM_001081984)	16578.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31435381-2	chr3	31434881	31435881	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-125062.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116047557-2	chr6	116047057	116048057	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	-52552.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-93598686-2	chr4	93598183	93599183	+	552.0	f0_balb.idr|f1_balb.idr	Intergenic	L1MEc|LINE|L1	-263172.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	0.0	2.5	5.0	7.0	9.5	1.0
Merged-chr8-68368768-1	chr8	68368268	68369268	+	552.0	f0_balb.idr	intron (NR_038181, intron 1 of 3)	MER63A|DNA|hAT-Blackjack	309.0	NR_038181	73609.0	Mm.443247	NR_038181	ENSMUSG00000085197	1700125H03Rik	4930510D22Rik	RIKEN cDNA 1700125H03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-18933920-2	chr8	18933420	18934420	+	552.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001286469, exon 7 of 7)	exon (NM_001286469, exon 7 of 7)	16951.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103825666-2	chr14	103825166	103826166	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276296, intron 1 of 7)	intron (NM_001276296, intron 1 of 7)	18035.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55648841-1	chr14	55648341	55649341	+	552.0	f1_balb.idr	Intergenic	B4|SINE|B4	-1343.0	NM_001253888	71099.0	Mm.171300	NM_027673	ENSMUSG00000007591	Tssk4	1700020B19Rik|4933424F08Rik|TSK-4|TSSK-4	testis-specific serine kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114805838-2	chr11	114805338	114806338	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181749, intron 2 of 2)	intron (NM_181749, intron 2 of 2)	6914.0	NM_181749	217302.0	Mm.269127	NM_181749	ENSMUSG00000034677	Gpr142	PGR2	G protein-coupled receptor 142	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-123506705-2	chr4	123506205	123507205	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 16 of 92)	intron (NM_001199137, intron 16 of 92)	-94794.0	NM_001167918	442834.0	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34878599-1	chr18	34878099	34879099	+	552.0	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	17392.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35831248-1	chr17	35830748	35831748	+	552.0	f1_balb.idr	intron (NM_008027, intron 12 of 12)	B4|SINE|B4	7053.0	NM_011655	22154.0	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	0.0	0.0	1.5	0.0	0.0	8.5
Merged-chr4-52435778-1	chr4	52435278	52436278	+	552.0	f1_balb.idr	intron (NR_045175, intron 1 of 1)	Lx|LINE|L1	3186.0	NR_045175	72648.0	Mm.391869	NR_045175	ENSMUSG00000085763	Smc2os	2700081L22Rik	structural maintenance of chromosomes 2, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-35772753-1	chr16	35772253	35773253	+	552.0	f1_balb.idr	intron (NR_152314, intron 1 of 8)	intron (NR_152314, intron 1 of 8)	2367.0	NM_175111	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	5.5	14.0	4.0	1.0	4.5	8.5
Merged-chr2-4865160-2	chr2	4864660	4865660	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-16404.0	NM_175400	109079.0	Mm.34329	NM_175400	ENSMUSG00000026662	Sephs1	1110046B24Rik|AA589574|AI505014|AW111620|SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120374993-2	chr11	120374493	120375493	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027980, intron 4 of 9)	intron (NM_027980, intron 4 of 9)	3753.0	NM_027980	71885.0	Mm.274890	NM_027980	ENSMUSG00000025384	Faap100	2310003H01Rik	Fanconi anemia core complex associated protein 100	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135435562-2	chr4	135435062	135436062	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1757.0	NM_022980	53902.0	Mm.331970	NM_022980	ENSMUSG00000059713	Rcan3	AU041093|Csp3|Dscr1l2	regulator of calcineurin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180250829-2	chr1	180250329	180251329	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128605, intron 1 of 10)	intron (NM_001128605, intron 1 of 10)	-4879.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-45406567-1	chr4	45406067	45407067	+	552.0	f1_balb.idr	intron (NM_001009949, intron 1 of 2)	intron (NM_001009949, intron 1 of 2)	2199.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	27.0	9.5	8.5	9.0	10.0	12.0
Merged-chr11-50198923-2	chr11	50198423	50199423	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026543, intron 6 of 6)	intron (NM_026543, intron 6 of 6)	11897.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-77852831-1	chr14	77852331	77853331	+	552.0	f1_c57bl6.idr	intron (NM_025384, intron 3 of 5)	intron (NM_025384, intron 3 of 5)	22086.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	0.0	5.0	4.0	8.0	17.5	0.0
Merged-chr6-134240584-1	chr6	134240084	134241084	+	552.0	f0_balb.idr	intron (NM_001303102, intron 5 of 8)	intron (NM_001303102, intron 5 of 8)	-155745.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	7.5	7.5	1.0	0.0	5.5	12.0
Merged-chr4-95305654-1	chr4	95305154	95306154	+	552.0	f1_c57bl6.idr	Intergenic	Intergenic	-251853.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	6.5	6.0	5.0	5.0	5.0	1.0
Merged-chr19-53851370-1	chr19	53850870	53851870	+	552.0	f1_balb.idr	exon (NM_001170847, exon 11 of 14)	exon (NM_001170847, exon 11 of 14)	-40861.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31388889-1	chr14	31388389	31389389	+	552.0	f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	B4A|SINE|B4	28788.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-145130288-2	chr5	145129788	145130788	+	552.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033313, exon 6 of 6)	3' UTR (NM_001033313, exon 6 of 6)	9801.0	NM_001033313	231887.0	Mm.188851	NM_001033313	ENSMUSG00000029623	Pdap1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-35916097-1	chr18	35915597	35916597	+	552.0	f1_c57bl6.idr	Intergenic	Intergenic	-48733.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-33319296-2	chr12	33318796	33319796	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033436, intron 1 of 7)	intron (NM_001033436, intron 1 of 7)	16781.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.5	0.5	1.0	0.5	0.5	1.0
Merged-chr8-84995403-1	chr8	84994903	84995903	+	552.0	f1_c57bl6.idr	intron (NM_133255, intron 10 of 21)	intron (NM_133255, intron 10 of 21)	4808.0	NM_001167991	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	6.0	8.0	0.0	0.0	1.0	2.5
Merged-chr16-81670364-1	chr16	81669864	81670864	+	552.0	f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	469667.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-95835137-1	chr16	95834637	95835637	+	552.0	f1_c57bl6.idr	intron (NR_040485, intron 3 of 3)	intron (NR_040485, intron 3 of 3)	63576.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85620603-1	chr1	85620103	85621103	+	552.0	f1_balb.idr	intron (NM_001013817, intron 6 of 16)	L1_Mur2|LINE|L1	-16712.0	NM_175397	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19782719-1	chr7	19782219	19783219	+	552.0	f1_balb.idr	intron (NM_001161844, intron 8 of 10)	ID4_|SINE|ID	-12187.0	NM_020486	57278.0	Mm.29236	NM_020486	ENSMUSG00000002980	Bcam	1200005K12Rik|B-CAM|Gplu|Lu	basal cell adhesion molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105625153-1	chr5	105624653	105625653	+	552.0	f1_balb.idr	Intergenic	Intergenic	-74816.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124087499-1	chr5	124086999	124087999	+	552.0	f1_balb.idr	intron (NM_019875, intron 2 of 11)	ORR1F|LTR|ERVL-MaLR	8299.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79928970-1	chr15	79928470	79929470	+	552.0	f0_balb.idr	intron (NM_144811, intron 2 of 6)	intron (NM_144811, intron 2 of 6)	3676.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	46.0	35.5	41.0	55.0	63.5	44.5
Merged-chr3-137895337-1	chr3	137894837	137895837	+	552.0	f1_c57bl6.idr	intron (NM_001033155, intron 3 of 7)	B3|SINE|B2	-23218.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	15.5	7.5	17.5	3.5	8.5	2.5
Merged-chr4-148678190-2	chr4	148677690	148678690	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34873.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	0.0	6.5	4.0	4.0	8.0	1.0
Merged-chr12-117700100-1	chr12	117699600	117700600	+	552.0	f1_c57bl6.idr	intron (NM_175930, intron 13 of 27)	RLTR26B_MM|LTR|ERVK	-143761.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr6-122969311-1	chr6	122968811	122969811	+	552.0	f0_balb.idr	intron (NM_153197, intron 5 of 5)	intron (NM_153197, intron 5 of 5)	16667.0	NM_153197	73149.0	Mm.25684	NM_153197	ENSMUSG00000043832	Clec4a3	3110037K17Rik|Dcir3	C-type lectin domain family 4, member a3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-44159950-2	chr1	44159450	44160450	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011729, intron 4 of 14)	B1_Mur3|SINE|Alu	12206.0	NM_011729	22592.0	Mm.2213	NM_011729	ENSMUSG00000026048	Ercc5	Xpg	excision repair cross-complementing rodent repair deficiency, complementation group 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46369957-2	chr18	46369457	46370457	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-58029.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32837011-1	chr16	32836511	32837511	+	552.0	f0_balb.idr	intron (NM_172615, intron 8 of 18)	intron (NM_172615, intron 8 of 18)	-26565.0	NM_001256309	381043.0	Mm.303864	NM_001256309	ENSMUSG00000094430	Smbd1	Gm1743|Gm933	somatomedin B domain containing 1	protein-coding	5.5	5.0	3.5	0.0	6.5	0.5
Merged-chr10-25327653-2	chr10	25327153	25328153	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A1|LTR|ERVL-MaLR	-28490.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0.0	0.0	1.5	0.5	3.0	0.0
Merged-chr6-115529129-1	chr6	115528629	115529629	+	552.0	f1_c57bl6.idr	Intergenic	Intergenic	-15575.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136194786-2	chr5	136194286	136195286	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025774, intron 2 of 5)	PB1D10|SINE|Alu	4168.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110499390-1	chr12	110498890	110499890	+	552.0	f0_balb.idr	intron (NM_001081457, intron 1 of 12)	intron (NM_001081457, intron 1 of 12)	13651.0	NM_012023	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-75308098-2	chr12	75307598	75308598	+	552.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023275)	promoter-TSS (NM_023275)	-215.0	NM_023275	80837.0	Mm.27467	NM_023275	ENSMUSG00000046768	Rhoj	1110005O19Rik|AW210585|Arhj|TC10L|TCL	ras homolog family member J	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-120898558-2	chr10	120898058	120899058	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177092, intron 1 of 6)	CpG	413.0	NM_177092	320183.0	Mm.169755	NM_177092	ENSMUSG00000051236	Msrb3	D430026P16Rik|I-8-23|MsrB2	methionine sulfoxide reductase B3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-37051591-2	chr17	37051091	37052091	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019439, intron 6 of 22)	intron (NM_019439, intron 6 of 22)	5625.0	NM_019439	54393.0	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102035320-1	chr5	102034820	102035820	+	552.0	f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	34601.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-122035813-2	chr3	122035313	122036313	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8647.0	NM_007378	11304.0	Mm.3918	NM_007378	ENSMUSG00000028125	Abca4	AW050280|Abc10|Abcr|D430003I15Rik|RmP	ATP-binding cassette, sub-family A (ABC1), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86754520-2	chr11	86754020	86755020	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	3047.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54155095-2	chr11	54154592	54155592	+	552.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54168.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92493652-1	chr5	92493152	92494152	+	552.0	f0_balb.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	12005.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119999697-1	chr9	119999197	120000197	+	552.0	f1_balb.idr	Intergenic	Intergenic	-14955.0	NM_153287	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.0	2.0	3.5	0.0	3.0	3.5
Merged-chr11-54055359-2	chr11	54054859	54055859	+	552.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_019417, exon 6 of 7)	exon (NM_019417, exon 6 of 7)	13658.0	NM_019417	30794.0	Mm.21830	NM_019417	ENSMUSG00000020388	Pdlim4	Ril	PDZ and LIM domain 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12812945-1	chr19	12812445	12813445	+	552.0	f1_c57bl6.idr	intron (NM_134152, intron 3 of 8)	intron (NM_134152, intron 3 of 8)	14366.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	15.5	33.5	19.0	39.0	47.5	31.0
Merged-chr9-114642434-1	chr9	114641934	114642934	+	552.0	f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-2234.0	NM_153585	78893.0	Mm.283708	NM_153585	ENSMUSG00000056167	Cnot10	2600001P13Rik	CCR4-NOT transcription complex, subunit 10	protein-coding	4.0	0.0	2.5	5.0	5.5	0.0
Merged-chr15-30029604-2	chr15	30029104	30030104	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-142989.0	NM_001355502	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-122225480-2	chr9	122224980	122225980	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271873, intron 11 of 12)	intron (NM_001271873, intron 11 of 12)	48548.0	NR_106185	102465896.0		NR_106185	ENSMUSG00000098922	Mir8106	Gm27594|mmu-mir-8106	microRNA 8106	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102106961-2	chr7	102106461	102107461	+	552.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009710, exon 3 of 5)	exon (NM_009710, exon 3 of 5)	5218.0	NM_009710	11870.0	Mm.261071	NM_009710	ENSMUSG00000030996	Art1	ADPRT|ARTC1|Yac-1	ADP-ribosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6249703-2	chr19	6249203	6250203	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194348, intron 11 of 39)	intron (NM_194348, intron 11 of 39)	8035.0	NM_194348	329015.0	Mm.277384	NM_194348	ENSMUSG00000024773	Atg2a	1810013C15Rik|A830054M12|BC023754|mKIAA0404	autophagy related 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134377666-2	chr5	134377166	134378166	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081462, intron 20 of 29)	B1_Mur1|SINE|Alu	51212.0	NR_039544	100628570.0		NR_039544	ENSMUSG00000093311	Mir3965	mmu-mir-3965|mu-mir-3965	microRNA 3965	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96656398-2	chr10	96655898	96656898	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39397.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39783748-2	chr6	39783248	39784248	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	27188.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-144977285-1	chr4	144976785	144977785	+	552.0	f0_balb.idr	intron (NM_001276465, intron 68 of 69)	intron (NM_001276465, intron 68 of 69)	84148.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107642979-1	chr9	107642479	107643479	+	552.0	f1_c57bl6.idr	Intergenic	B3|SINE|B2	-7637.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	1.5	8.5	3.5	0.0	4.5	0.5
Merged-chr13-4281763-1	chr13	4281263	4282263	+	552.0	f1_c57bl6.idr	Intergenic	Intergenic	-2364.0	NM_013777	622402.0	Mm.27447	NM_013777	ENSMUSG00000021211	Akr1c12	AI266976|Akra	aldo-keto reductase family 1, member C12	protein-coding	3.0	3.5	4.5	6.5	0.0	0.0
Merged-chr6-47789810-2	chr6	47789310	47790310	+	551.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR51A_Mm|LTR|ERVK?	13842.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75830880-2	chr15	75830380	75831380	+	551.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172121, intron 3 of 11)	intron (NM_172121, intron 3 of 11)	11028.0	NM_172121	223642.0	Mm.209800	NM_172121	ENSMUSG00000075600	Zc3h3	BC049953|Kiaa0150|Smicl|Zc3hdc3	zinc finger CCCH type containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-62865722-3	chr5	62865225	62866225	+	551.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 7 of 8)	RMER15|LTR|ERVL	51902.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-19153875-2	chr3	19153375	19154375	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357689, intron 2 of 6)	intron (NM_001357689, intron 2 of 6)	9220.0	NM_028840	74252.0	Mm.200383	NM_028840	ENSMUSG00000027599	Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-28955638-2	chr18	28955138	28956138	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045398, intron 4 of 4)	MTE2a|LTR|ERVL-MaLR	83422.0	NR_155537	102637039.0	Mm.50107	NR_155537		Gm33948	-	predicted gene, 33948	ncRNA	1.0	3.0	0.0	1.0	0.0	4.5
Merged-chr16-15983990-2	chr16	15983490	15984490	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 7 of 18)	intron (NM_001355731, intron 7 of 18)	96704.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122570569-2	chr8	122570069	122571069	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026014, intron 6 of 9)	intron (NM_026014, intron 6 of 9)	2554.0	NM_026014	67177.0	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-79969269-2	chr17	79968769	79969769	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73146.0	NM_001286647	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-75689050-2	chr2	75688550	75689550	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010902, intron 1 of 4)	B3|SINE|B2	15613.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-88491862-2	chr3	88491362	88492362	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002011, intron 1 of 11)	intron (NM_001002011, intron 1 of 11)	1450.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-65650424-2	chr13	65649924	65650924	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	371570.0	NM_178364	170936.0	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-66452446-2	chr18	66451946	66452946	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6158.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32933509-2	chr19	32932993	32933993	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	175916.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0.0	7.5	2.0	4.0	4.0	4.0
Merged-chr16-20827256-2	chr16	20826756	20827756	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-92745.0	NM_009379	21832.0	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108632079-1	chr9	108631579	108632579	+	551.5	f0_balb.idr	intron (NM_001357286, intron 3 of 16)	intron (NM_001357286, intron 3 of 16)	17329.0	NM_011790	23807.0	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-28019840-2	chr15	28019340	28020340	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	6008.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22932132-2	chr8	22931632	22932632	+	551.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081149, exon 16 of 18)	exon (NM_001081149, exon 16 of 18)	-42704.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53246523-2	chr4	53246023	53247023	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040665, intron 1 of 2)	intron (NR_040665, intron 1 of 2)	327.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-39609927-2	chr15	39609427	39610427	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053271, intron 21 of 26)	intron (NM_053271, intron 21 of 26)	-49584.0	NM_001256384	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-5522589-2	chr11	5522089	5523089	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013842, intron 2 of 4)	L1_Rod|LINE|L1	1948.0	NM_001271730	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135760880-2	chr7	135760380	135761380	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44501.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-6452187-2	chr4	6451687	6452687	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 1 of 30)	MER53|DNA|hAT	2084.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121751654-2	chr8	121751154	121752154	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020605, intron 1 of 4)	B3|SINE|B2	21095.0	NM_020605	57340.0	Mm.306870	NM_020605	ENSMUSG00000025318	Jph3	JP-3|Jp3	junctophilin 3	protein-coding	4.5	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27211175-2	chr3	27210675	27211675	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	28171.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-75696424-2	chr16	75695924	75696924	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70394.0	NR_027492	110920.0	Mm.26704	NM_030201	ENSMUSG00000032932	Hspa13	1600002I10Rik|AV006182|B230217N24Rik|Stch	heat shock protein 70 family, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94365188-2	chr11	94364688	94365688	+	551.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029600, exon 12 of 31)	exon (NM_029600, exon 12 of 31)	27788.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141454307-2	chr7	141453807	141454807	+	551.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163689)	promoter-TSS (NM_001163689)	-881.0	NM_025802	66853.0	Mm.29998	NM_025802	ENSMUSG00000025509	Pnpla2	0610039C21Rik|1110001C14Rik|Atgl|TTS-2.2	patatin-like phospholipase domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80898417-2	chr10	80897917	80898917	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081688, intron 17 of 17)	B4A|SINE|B4	2552.0	NM_013895	30055.0	Mm.142132	NM_013895	ENSMUSG00000020219	Timm13	D10Ertd378e|Tim9|Timm9	translocase of inner mitochondrial membrane 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124475574-2	chr6	124475074	124476074	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-10790.0	NM_153508	232370.0	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-56507021-2	chr9	56506521	56507521	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88402.0	NM_025812	66867.0	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108265855-2	chr9	108265355	108266355	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-1897.0	NM_001276485	13138.0	Mm.7524	NM_010017	ENSMUSG00000039952	Dag1	D9Wsu13e|DG|Dp427|Dp71	dystroglycan 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70555232-2	chr14	70554732	70555732	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021877, intron 2 of 19)	intron (NM_021877, intron 2 of 19)	1176.0	NM_021877	15460.0	Mm.7598	NM_021877	ENSMUSG00000022096	Hr	ALUNC|AU|N|ba|bldy|hr|rh|rh-bmh|rhino	hairless	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-13773359-2	chr11	13772859	13773859	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	405682.0	NR_131011	75280.0	Mm.108492	NR_131011	ENSMUSG00000085452	4930554G24Rik	-	RIKEN cDNA 4930554G24 gene	ncRNA	0.0	3.0	0.0	0.0	0.0	0.0
Merged-chr14-16250270-2	chr14	16249760	16250760	+	551.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027695)	promoter-TSS (NM_027695)	-452.0	NM_027695	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	13.0	23.0	21.0	3.5	17.0	20.5
Merged-chr1-54840258-2	chr1	54839758	54840758	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	86129.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	13.5	0.0	1.5	7.5	2.5	5.5
Merged-chr18-38432173-2	chr18	38431673	38432673	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	ORR1A4|LTR|ERVL-MaLR	13266.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-82362045-2	chr17	82361545	82362545	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-623658.0	NM_011406	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24639339-2	chr10	24638839	24639839	+	551.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008813, exon 25 of 25)	3' UTR (NM_008813, exon 25 of 25)	43897.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25514391-2	chr9	25513891	25514891	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	32794.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46959807-2	chr19	46959307	46960307	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164363, intron 1 of 17)	intron (NM_001164363, intron 1 of 17)	2544.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	4.0	1.5	3.0	0.5	0.0	1.0
Merged-chr2-6536254-2	chr2	6535754	6536754	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	183518.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-22018080-2	chr14	22017580	22018580	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1632.0	NM_028275	76633.0	Mm.489898	NM_028275	ENSMUSG00000063458	Lrmda	1700112E06Rik|2700009F18Rik	leucine rich melanocyte differentiation associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23400141-2	chr16	23399641	23400641	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28992.0	NM_001004151	239766.0	Mm.208751	NM_001004151	ENSMUSG00000033383	Rtp1	Gm1766|Gm604	receptor transporter protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131258266-2	chr1	131257766	131258766	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019777, intron 18 of 21)	intron (NM_019777, intron 18 of 21)	-13088.0	NM_018750	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	2.0	2.5	0.0	1.0	2.0	0.0
Merged-chr11-76448010-2	chr11	76447510	76448510	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 15 of 21)	intron (NM_001346670, intron 15 of 21)	20455.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.0	1.5	0.0	2.0	0.5	0.0
Merged-chr4-3750228-2	chr4	3749728	3750728	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 8 of 12)	(TTCA)n|Simple_repeat|Simple_repeat	35264.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	9.5	10.0	15.5	22.5	11.0	12.0
Merged-chr9-120069840-2	chr9	120069340	120070340	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1544.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	3.0	2.5	1.0	4.0	0.0	3.0
Merged-chr16-66748912-2	chr16	66748412	66749412	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178721, intron 7 of 9)	Lx8|LINE|L1	91794.0	NR_040512	75501.0	Mm.394300	NR_040512	ENSMUSG00000092599	1700010K23Rik	-	RIKEN cDNA 1700010K23 gene	ncRNA	6.5	0.0	6.0	0.0	0.0	1.5
Merged-chr7-77511776-2	chr7	77511276	77512276	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	1066062.0	NM_008746	18213.0	Mm.33496	NM_008746	ENSMUSG00000059146	Ntrk3	AW125844|Ntrk3_tv3|TrkC	neurotrophic tyrosine kinase, receptor, type 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5618548-2	chr17	5618048	5619048	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	125948.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-75742519-2	chr7	75742019	75743019	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 30 of 36)	intron (NM_029332, intron 30 of 36)	-105819.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-20830518-2	chr6	20830018	20831018	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F|LINE|L1	-385591.0	NM_019697	16508.0	Mm.425316	NM_019697	ENSMUSG00000060882	Kcnd2	AI839615|AW555701|Kv4.2|R75121|mKIAA1044	potassium voltage-gated channel, Shal-related family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119631353-2	chr4	119630853	119631853	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6379.0	NM_008190	14915.0	Mm.2614	NM_008190	ENSMUSG00000023247	Guca2a	Guca2	guanylate cyclase activator 2a (guanylin)	protein-coding	0.0	0.0	1.5	2.5	0.0	0.0
Merged-chr12-8495363-2	chr12	8494863	8495863	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4646.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	0.0	0.0	5.5	0.0	1.0	0.5
Merged-chr19-12003247-2	chr19	12002747	12003747	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33493.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6530604-2	chr19	6530104	6531104	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020253, intron 22 of 22)	intron (NM_020253, intron 22 of 22)	12466.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43228282-2	chr5	43227782	43228782	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 1 of 7)	intron (NR_028417, intron 1 of 7)	-5181.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0.0	6.0	0.0	0.0	3.0	0.0
Merged-chr2-26921657-2	chr2	26921157	26922157	+	551.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011512, exon 6 of 6)	3' UTR (NM_011512, exon 6 of 6)	-5127.0	NM_013677	20930.0	Mm.347512	NM_013677	ENSMUSG00000015790	Surf1	0610010F23Rik|Surf-1	surfeit gene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56714048-2	chr17	56713548	56714548	+	551.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178926, exon 2 of 2)	3' UTR (NM_178926, exon 2 of 2)	2873.0	NM_178926	106639.0	Mm.37290	NM_178926	ENSMUSG00000054723	Vmac	AI662250	vimentin-type intermediate filament associated coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-81783160-2	chr3	81782674	81783674	+	551.5	f0_balb.idr|f1_balb.idr	Intergenic	LTR41B|LTR|ERVL	-18851.0	NR_138586	320566.0	Mm.208417	NR_138586	ENSMUSG00000103695	A830029E22Rik	-	RIKEN cDNA A830029E22 gene	ncRNA	1.0	0.0	1.5	1.5	1.0	2.0
Merged-chr1-135531908-2	chr1	135531408	135532408	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173437, intron 3 of 28)	intron (NM_173437, intron 3 of 28)	53447.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-3743877-1	chr13	3743377	3744377	+	551.5	f0_c57.idr	Intergenic	Intergenic	60441.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181460494-2	chr2	181459994	181460994	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-8993	-1068.0	NM_028125	72147.0	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66284033-2	chr9	66283533	66284533	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66417.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0.0	0.0	0.0	1.0	0.5	0.0
Merged-chr5-29435611-2	chr5	29435111	29436111	+	551.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033457, exon 1 of 11)	exon (NM_001033457, exon 1 of 11)	944.0	NM_001033457	433864.0	Mm.262815	NM_001033457	ENSMUSG00000001569	Nom1	D5Kng1|Gm1040	nucleolar protein with MIF4G domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135188825-2	chr5	135188325	135189325	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011714, intron 1 of 18)	intron (NM_011714, intron 1 of 18)	1502.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25121997-2	chr8	25121497	25122497	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19818.0	NR_155282	74744.0	Mm.117802	NR_155282		5830408C22Rik	2700026D01Rik	RIKEN cDNA 5830408C22 gene	ncRNA	0.0	0.0	0.0	0.0	4.5	0.0
Merged-chr10-95356648-2	chr10	95356148	95357148	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045337, intron 1 of 2)	intron (NR_045337, intron 1 of 2)	20372.0	NR_045337	69629.0	Mm.250542	NR_045337	ENSMUSG00000100550	2310039L15Rik	A53T-syn|G2-3|PrPsynA53T|Tg(Prnp-SNCA*A53T)23Mkle	RIKEN cDNA 2310039L15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-22623139-2	chr17	22622639	22623639	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21991.0	NM_001104575	628185.0	Mm.390947	NM_001104575	ENSMUSG00000094921	Vmn2r112	EG628185|V2rp1	vomeronasal 2, receptor 112	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35574400-2	chr9	35573900	35574900	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4331.0	NM_029762	76832.0	Mm.482285	NM_029762	ENSMUSG00000050555	Hyls1	3010015K02Rik	HYLS1, centriolar and ciliogenesis associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-127789394-2	chr2	127788894	127789894	+	551.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016902)	promoter-TSS (NM_016902)	-503.0	NM_001355429	53885.0	Mm.210766	NM_016902	ENSMUSG00000027378	Nphp1	-	nephronophthisis 1 (juvenile) homolog (human)	protein-coding	9.5	49.0	37.5	24.5	39.5	45.0
Merged-chr11-103989082-3	chr11	103988581	103989581	+	551.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22210.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-72811767-2	chr11	72811267	72812267	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045536, intron 1 of 54)	B1_Mus1|SINE|Alu	15541.0	NM_001045536	195018.0	Mm.272030	NM_001045536	ENSMUSG00000055670	Zzef1	8430405D05Rik|BC051585|C130099L13Rik|C85424|NSPA|mKIAA0399	zinc finger, ZZ-type with EF hand domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-92038896-2	chr9	92038407	92039407	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_A|LINE|L1	-154029.0	NM_001195693	100504689.0	Mm.464262	NM_001195693	ENSMUSG00000095654	Plscr5	331000	phospholipid scramblase family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60934980-1	chr18	60934480	60935480	+	551.0	f1_c57bl6.idr	intron (NM_177407, intron 1 of 17)	intron (NM_177407, intron 1 of 17)	9348.0	NM_177407	12322.0	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30595109-2	chr16	30594609	30595609	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-4614.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-23200102-1	chr17	23199602	23200602	+	551.0	f0_balb.idr	Intergenic	Intergenic	-6850.0	NM_001357697	22700.0	Mm.437934	NM_009555	ENSMUSG00000002617	Zfp40	CTfin12|NTfin12|Zfp-40	zinc finger protein 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66007815-2	chr5	66007315	66008315	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3530.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81225197-1	chr7	81224697	81225697	+	551.0	f0_balb.idr	intron (NM_008803, intron 1 of 21)	B4A|SINE|B4	11393.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0.0	2.5	7.0	0.0	2.5	0.0
Merged-chr18-50130938-1	chr18	50130438	50131438	+	551.0	f1_c57bl6.idr	intron (NM_008292, intron 2 of 23)	intron (NM_008292, intron 2 of 23)	2737.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	4.0	3.5	7.0	7.0	12.0	7.0
Merged-chr7-61645499-1	chr7	61644999	61645999	+	551.0	f1_c57bl6.idr	Intergenic	Intergenic	-30172.0	NR_045727	319752.0	Mm.294476	NR_045727		B230209E15Rik	-	RIKEN cDNA B230209E15 gene	ncRNA	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr2-124624032-2	chr2	124623532	124624532	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	13736.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-143628880-1	chr5	143628380	143629380	+	551.0	f1_c57bl6.idr	intron (NM_011182, intron 1 of 12)	B1_Mur4|SINE|Alu	6433.0	NM_011182	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112977459-2	chr12	112976959	112977959	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201646, intron 3 of 3)	intron (NM_201646, intron 3 of 3)	896.0	NM_201646	399566.0	Mm.440140	NM_201646	ENSMUSG00000002803	Btbd6	-	BTB (POZ) domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30586100-1	chr7	30585600	30586600	+	551.0	f1_balb.idr	exon (NM_001290573, exon 3 of 37)	exon (NM_001290573, exon 3 of 37)	2626.0	NM_001290573	75410.0	Mm.168688	NM_029274	ENSMUSG00000006307	Kmt2b	2610014H22Rik|Mll2|Wbp7|mKIAA0304	lysine (K)-specific methyltransferase 2B	protein-coding	0.0	2.0	3.5	0.0	5.0	1.0
Merged-chr17-13217046-2	chr17	13216546	13217546	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4142.0	NM_013741	27263.0	Mm.371809	NM_013741	ENSMUSG00000073458	Smok2a	Smok2	sperm motility kinase 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99468203-1	chr10	99467703	99468703	+	551.0	f0_balb.idr	Intergenic	Intergenic	-140968.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-14681408-2	chr18	14680908	14681908	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009280, intron 1 of 10)	B3A|SINE|B2	1506.0	NM_001161369	268996.0	Mm.31761	NM_009280	ENSMUSG00000037013	Ss18	D130059H17|Ssxt|Syt	SS18, nBAF chromatin remodeling complex subunit	protein-coding	1.5	8.5	15.5	1.0	2.0	8.0
Merged-chr12-44543606-2	chr12	44543106	44544106	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146031, intron 7 of 27)	intron (NM_001146031, intron 7 of 27)	214721.0	NM_001146031	319504.0	Mm.208439	NM_176930	ENSMUSG00000020598	Nrcam	Bravo|C030017F07Rik|C130076O07Rik|mKIAA0343	neuronal cell adhesion molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-55511237-1	chr1	55510737	55511737	+	551.0	f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	B4A|SINE|B4	105291.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	13.5	11.0	8.5	19.0	10.5	10.0
Merged-chr8-13163377-2	chr8	13162877	13163877	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010684, intron 1 of 8)	B3A|SINE|B2	4216.0	NM_010684	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-81544652-1	chr17	81544152	81545152	+	551.0	f0_balb.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	193735.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-55359733-2	chr3	55359233	55360233	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357475, intron 3 of 16)	MTD|LTR|ERVL-MaLR	-101995.0	NM_001195539	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29797372-2	chr6	29796872	29797872	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	MLT1G3|LTR|ERVL-MaLR	28929.0	NM_001171000	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97914925-1	chr15	97914425	97915425	+	551.0	f1_balb.idr	Intergenic	RMER10A|LTR|ERVL	-6629.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37473526-1	chr1	37473026	37474026	+	551.0	f0_balb.idr	intron (NM_173870, intron 5 of 15)	L1M3b|LINE|L1	15079.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-31076694-2	chr3	31076194	31077194	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18364.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16927161-1	chr7	16926661	16927661	+	551.0	f1_balb.idr	Intergenic	B2_Mm1a|SINE|B2	-3129.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr8-4236578-2	chr8	4236078	4237078	+	551.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028175, exon 3 of 3)	3' UTR (NM_028175, exon 3 of 3)	-2162.0	NM_011944	26400.0	Mm.3906	NM_011944	ENSMUSG00000002948	Map2k7	5930412N11Rik|JNKK 2|Jnkk2|MAPKK 7|MEK 7|Mapkk7|Mek7|Mkk7|Prkmk7|sek2	mitogen-activated protein kinase kinase 7	protein-coding	11.0	0.0	0.0	1.0	1.0	2.5
Merged-chr17-25441014-1	chr17	25440514	25441514	+	551.0	f1_balb.idr	Intergenic	Intergenic	-7231.0	NM_001163691	58226.0	Mm.268378	NM_021415	ENSMUSG00000024112	Cacna1h	Cav3.2|MNCb-1209|alpha13.2	calcium channel, voltage-dependent, T type, alpha 1H subunit	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr2-78534065-2	chr2	78533565	78534565	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	296518.0	NM_177843	329436.0	Mm.235448	NM_177843		Gm14461	A830093M07	predicted gene 14461	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-133724517-2	chr2	133724017	133725017	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER91B|DNA|hAT-Tip100	159809.0	NR_037273	100526500.0		NR_037273	ENSMUSG00000093338	Mir3090	mmu-mir-3090	microRNA 3090	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-9715847-1	chr10	9715347	9716347	+	551.0	f0_balb.idr	Intergenic	Intergenic	31125.0	NR_038036	620417.0	Mm.378085	NR_038036	ENSMUSG00000111901	Gm6150	-	predicted gene 6150	ncRNA	0.0	5.5	1.0	0.0	0.0	0.0
Merged-chr6-89268443-1	chr6	89267943	89268943	+	551.0	f0_balb.idr	Intergenic	Intergenic	17282.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124425186-1	chr6	124424686	124425686	+	551.0	f0_balb.idr	Intergenic	Intergenic	-9331.0	NM_001360570	19305.0	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1-BP|PTS1R|PXR1P|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85667958-2	chr12	85667458	85668458	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18762.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-108289138-2	chr3	108288638	108289638	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019972, intron 1 of 19)	intron (NM_019972, intron 1 of 19)	5074.0	NM_019972	20661.0	Mm.157119	NM_019972	ENSMUSG00000068747	Sort1	2900053A11Rik|AI852375|Ntr3|Ntsr3	sortilin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5640543-1	chr19	5640043	5641043	+	551.0	f1_c57bl6.idr	intron (NM_009045, intron 6 of 10)	intron (NM_009045, intron 6 of 10)	3053.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	6.0	4.5	1.0	3.0	7.0	0.0
Merged-chr16-17653525-2	chr16	17653025	17654025	+	551.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_033609, exon 15 of 18)	exon (NM_033609, exon 15 of 18)	7055.0	NM_001166164	72315.0	Mm.297777	NM_001166164	ENSMUSG00000041617	Ccdc74a	2310015A05Rik	coiled-coil domain containing 74A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-21775673-1	chr15	21775173	21776173	+	551.0	f1_balb.idr	Intergenic	Lx5|LINE|L1	664221.0	NM_001008420	215654.0	Mm.300909	NM_001008420	ENSMUSG00000040452	Cdh12	Cdhb	cadherin 12	protein-coding	0.0	8.0	4.0	0.0	0.0	0.0
Merged-chr4-119847785-1	chr4	119847285	119848285	+	551.0	f0_balb.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	33107.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr18-78151973-2	chr18	78151473	78152473	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207651, intron 20 of 21)	intron (NM_207651, intron 20 of 21)	-9854.0	NM_001171011	108052.0	Mm.33832	NM_028122	ENSMUSG00000059336	Slc14a1	2610507K20Rik|3021401A05Rik|UT-B|Utb1	solute carrier family 14 (urea transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-46050557-1	chr19	46050057	46051057	+	551.0	f1_balb.idr	Intergenic	MLTR11B|LTR|ERVK	-5246.0	NM_001113408	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	4.0	4.0	2.5	1.0	1.0	0.5
Merged-chr1-39547425-1	chr1	39546925	39547925	+	551.0	f0_balb.idr	TTS (NM_028043)	TTS (NM_028043)	1415.0	NR_028555	100217461.0		NR_028555	ENSMUSG00000077704	Snord89	MBII-289	small nucleolar RNA, C/D box 89	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4884069-1	chr2	4883569	4884569	+	551.0	f1_c57bl6.idr	intron (NM_175400, intron 1 of 8)	intron (NM_175400, intron 1 of 8)	2505.0	NM_175400	109079.0	Mm.34329	NM_175400	ENSMUSG00000026662	Sephs1	1110046B24Rik|AA589574|AI505014|AW111620|SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding	0.0	1.0	2.0	0.0	1.0	2.0
Merged-chr3-88150181-1	chr3	88149681	88150681	+	551.0	f1_balb.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	7809.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28705218-2	chr17	28704718	28705718	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	12650.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-70641404-2	chr13	70640904	70641904	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3770.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55324212-2	chr13	55323712	55324712	+	551.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_016662)	TTS (NM_016662)	2157.0	NM_025596	66494.0	Mm.439805	NM_025596	ENSMUSG00000021486	Prelid1	2610524G07Rik|Preli	PRELI domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84889587-1	chr15	84889087	84890087	+	551.0	f0_c57.idr	Intergenic	Intergenic	-33458.0	NR_030731	271305.0	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-59406175-1	chr4	59405675	59406675	+	551.0	f0_balb.idr	intron (NM_001163288, intron 5 of 16)	intron (NM_001163288, intron 5 of 16)	32458.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-68254824-1	chr15	68254324	68255324	+	551.0	f1_c57bl6.idr	intron (NR_152182, intron 1 of 13)	RMER17D|LTR|ERVK	4032.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-19833211-1	chr13	19832711	19833711	+	551.0	f0_balb.idr	Intergenic	Intergenic	-8954.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	0.0	6.0	16.0	11.5	29.0	17.5
Merged-chr9-114621214-1	chr9	114620714	114621714	+	551.0	f1_c57bl6.idr	intron (NM_153585, intron 8 of 19)	intron (NM_153585, intron 8 of 19)	18986.0	NM_153585	78893.0	Mm.283708	NM_153585	ENSMUSG00000056167	Cnot10	2600001P13Rik	CCR4-NOT transcription complex, subunit 10	protein-coding	0.0	1.5	4.5	1.5	4.0	6.5
Merged-chr11-70174763-1	chr11	70174263	70175263	+	551.0	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	8140.0	NM_010796	17312.0	Mm.252405	NM_010796	ENSMUSG00000000318	Clec10a	CD301a|M-ASGP-BP-1|Mgl|Mgl1	C-type lectin domain family 10, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-74274498-1	chr13	74273998	74274998	+	551.0	f1_balb.idr	intron (NM_001317351, intron 2 of 9)	intron (NM_001317351, intron 2 of 9)	17833.0	NM_009644	11624.0	Mm.290446	NM_009644	ENSMUSG00000021575	Ahrr	mKIAA1234	aryl-hydrocarbon receptor repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-95717115-2	chr6	95716615	95717615	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011507, intron 1 of 10)	B4A|SINE|B4	1731.0	NM_011507	20917.0	Mm.371585	NM_011507	ENSMUSG00000061838	Suclg2	AF171077|AW556404|D6Wsu120e|G-SCS|GTPSCS|SCS-betaG	succinate-Coenzyme A ligase, GDP-forming, beta subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-62764005-2	chr5	62763505	62764505	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 1 of 32)	RSINE1|SINE|B4	2172.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34700192-2	chr13	34699692	34700692	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39450.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52973476-1	chr6	52972976	52973976	+	551.0	f0_balb.idr	intron (NM_173406, intron 1 of 4)	intron (NM_173406, intron 1 of 4)	-63856.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5132306-2	chr18	5131806	5132806	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	33425.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-142361003-1	chr7	142360503	142361503	+	551.0	f1_c57bl6.idr	intron (NM_001347541, intron 2 of 2)	MLT1A|LTR|ERVL-MaLR	11256.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50232883-1	chr11	50232383	50233383	+	551.0	f1_c57bl6.idr	TTS (NR_105884)	TTS (NR_105884)	638.0	NR_105884	102466765.0		NR_105884	ENSMUSG00000098474	Mir6919	Gm27889|mmu-mir-6919	microRNA 6919	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-12981327-1	chr7	12980827	12981827	+	551.0	f1_c57bl6.idr	intron (NM_175558, intron 4 of 5)	ID_B1|SINE|B4	3479.0	NM_001168561	269870.0	Mm.62083	NM_175558	ENSMUSG00000033961	Zfp446	A630035I11Rik|A930031C22|AA120513|AV306632	zinc finger protein 446	protein-coding	0.0	2.5	2.0	0.5	0.0	4.5
Merged-chr5-31294846-1	chr5	31294346	31295346	+	551.0	f1_balb.idr	intron (NM_001356946, intron 3 of 7)	intron (NM_001356946, intron 3 of 7)	1086.0	NM_001356945	64339.0	Mm.292544	NM_022424	ENSMUSG00000038552	Fndc4	2810430J06Rik|6330410H20Rik|AB030187|AI838506|AW487863|FRCP1|Fnmp1	fibronectin type III domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32833406-2	chr19	32832906	32833906	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75829.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145987351-1	chr6	145986851	145987851	+	551.0	f0_balb.idr	Intergenic	Intergenic	53229.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-110671449-1	chr1	110670949	110671949	+	551.0	f1_balb.idr	Intergenic	MTA_Mm-int|LTR|ERVL-MaLR	306144.0	NM_001356415	227485.0	Mm.322070	NM_001081386	ENSMUSG00000047216	Cdh19	-	cadherin 19, type 2	protein-coding	0.0	0.0	3.0	2.5	2.0	0.0
Merged-chr13-101692177-2	chr13	101691677	101692677	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 7 of 15)	intron (NM_001077495, intron 7 of 15)	453.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-95841545-1	chr10	95841045	95842045	+	551.0	f0_balb.idr	Intergenic	Intergenic	-99118.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62600562-2	chr10	62600062	62601062	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019553, intron 1 of 14)	B2_Mm1t|SINE|B2	1736.0	NM_019553	56200.0	Mm.413275	NM_019553	ENSMUSG00000020075	Ddx21	AI255159|AL022742|D10Ertd645e|D10Wsu42e	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62451033-1	chr10	62450533	62451533	+	551.0	f1_c57bl6.idr	non-coding (NR_027926, exon 1 of 1)	non-coding (NR_027926, exon 1 of 1)	-1295.0	NM_181423	338359.0	Mm.235898	NM_181423	ENSMUSG00000020079	Supv3l1	6330443E10Rik	suppressor of var1, 3-like 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-105680795-2	chr2	105680295	105681295	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310144, intron 3 of 11)	intron (NM_001310144, intron 3 of 11)	-1668.0	NM_001310146	18508.0	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	2.0	0.0	0.0	2.0	0.0	0.0
Merged-chr16-58524142-1	chr16	58523642	58524642	+	551.0	f1_c57bl6.idr	promoter-TSS (NM_018784)	promoter-TSS (NM_018784)	111.0	NM_001357435	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	20.0	13.5	14.5	6.0	9.5	13.5
Merged-chr12-72664220-1	chr12	72663720	72664720	+	551.0	f0_balb.idr	intron (NM_025522, intron 1 of 6)	intron (NM_025522, intron 1 of 6)	608.0	NM_025522	66375.0	Mm.289653	NM_025522	ENSMUSG00000021094	Dhrs7	2310016E22Rik|5730564L20Rik|AW061210|Retdsr4|Retsdr4	dehydrogenase/reductase (SDR family) member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19054337-2	chr7	19053837	19054837	+	551.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159671)	promoter-TSS (NM_001159671)	-350.0	NM_031255	83434.0	Mm.84435	NM_031255	ENSMUSG00000040866	Rsph6a	RSP4|Rshl1	radial spoke head 6 homolog A (Chlamydomonas)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-3265508-2	chr16	3265008	3266008	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-326890.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-77282215-2	chr16	77281715	77282715	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-47113.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5441909-1	chr17	5441409	5442409	+	551.0	f1_c57bl6.idr	Intergenic	Intergenic	-1649.0	NM_027457	70544.0	Mm.46654	NM_027457	ENSMUSG00000004945	Tmem242	1110008A10Rik|2310046K16Rik|5730437N04Rik	transmembrane protein 242	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-39288116-1	chr4	39287616	39288616	+	551.0	f1_balb.idr	Intergenic	L1_Mur3|LINE|L1	-162177.0	NM_001081095	75471.0	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding	11.0	22.0	2.5	2.5	4.0	1.0
Merged-chr13-46619785-2	chr13	46619285	46620285	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026056, intron 7 of 12)	intron (NM_026056, intron 7 of 12)	-49737.0	NM_001033192	97863.0	Mm.275934	NM_001033192	ENSMUSG00000069237	Fam8a1	C78339	family with sequence similarity 8, member A1	protein-coding	1.0	0.0	0.0	0.0	1.5	0.0
Merged-chr8-119604082-1	chr8	119603582	119604582	+	551.0	f1_balb.idr	intron (NM_021441, intron 2 of 14)	intron (NM_021441, intron 2 of 14)	1158.0	NM_021441	21341.0	Mm.41977	NM_021441	ENSMUSG00000031832	Taf1c	Tafi95|mTAFI95	TATA-box binding protein associated factor, RNA polymerase I, C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-80038159-1	chr2	80037659	80038659	+	551.0	f0_balb.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	743.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-6311031-1	chr11	6310531	6311531	+	551.0	f1_c57bl6.idr	intron (NM_010956, intron 2 of 22)	intron (NM_010956, intron 2 of 22)	18452.0	NM_001361902	18293.0	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	0.0	0.0	0.0	0.0	0.5	0.0
Merged-chr4-105700971-2	chr4	105700471	105701471	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-540242.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135581721-2	chr5	135581221	135582221	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-8672.0	NM_001356630	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	7.0	10.0	6.0	6.5	11.0	6.0
Merged-chr1-128463749-1	chr1	128463249	128464249	+	551.0	f0_balb.idr	Intergenic	Intergenic	-46333.0	NM_145507	226414.0	Mm.28693	NM_145507	ENSMUSG00000026356	Dars	5730439G15Rik	aspartyl-tRNA synthetase	protein-coding	0.0	1.5	0.5	3.5	6.0	1.5
Merged-chr15-86217775-1	chr15	86217275	86218275	+	551.0	f1_balb.idr	intron (NM_145476, intron 1 of 12)	intron (NM_145476, intron 1 of 12)	3316.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152534348-1	chr1	152533848	152534848	+	551.0	f1_c57bl6.idr	intron (NM_016846, intron 12 of 17)	intron (NM_016846, intron 12 of 17)	90869.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-148226645-1	chr3	148226145	148227145	+	551.0	f0_balb.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	727990.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	3.0	3.0	2.0	7.0	6.0	4.0
Merged-chr4-148811755-1	chr4	148811255	148812255	+	551.0	f1_c57bl6.idr	intron (NM_027195, intron 1 of 15)	intron (NM_027195, intron 1 of 15)	7363.0	NM_027195	69743.0	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	0.0	1.0	6.0	0.0	2.5	2.0
Merged-chr7-25717775-2	chr7	25717275	25718275	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028771, intron 1 of 4)	ID_B1|SINE|B4	1278.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47362616-1	chr14	47362116	47363116	+	551.0	f1_c57bl6.idr	Intergenic	Intergenic	-11244.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	197.5	318.5	244.5	19.5	46.5	35.5
Merged-chr2-6779161-2	chr2	6778661	6779661	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 3 of 15)	intron (NM_001110232, intron 3 of 15)	-57499.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-86950370-2	chr12	86949870	86950870	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173735, intron 1 of 3)	intron (NM_173735, intron 1 of 3)	3027.0	NM_001289432	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-15955076-1	chr7	15954576	15955576	+	551.0	f1_balb.idr	intron (NM_153068, intron 4 of 5)	intron (NM_153068, intron 4 of 5)	-8968.0	NM_133831	68077.0	Mm.277634	NM_133831	ENSMUSG00000041560	Nop53	5330430H08Rik|9430097C02Rik|AU041936|AW536441|Gltscr2|PICT-1|R74911	NOP53 ribosome biogenesis factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-14087319-2	chr14	14086819	14087819	+	551.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_139227, exon 5 of 12)	exon (NM_139227, exon 5 of 12)	33585.0	NM_025550	66413.0	Mm.27591	NM_025550	ENSMUSG00000021737	Psmd6	2400006A19Rik	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-57179870-2	chr2	57179370	57180370	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040356, intron 1 of 2)	intron (NR_040356, intron 1 of 2)	1884.0	NR_040356	767815.0	Mm.188065	NR_040356	ENSMUSG00000084938	BB557941	-	expressed sequence BB557941	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30540312-2	chr16	30539851	30540851	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357415, intron 7 of 11)	intron (NM_001357415, intron 7 of 11)	10227.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152080229-1	chr2	152079729	152080729	+	551.0	f1_c57bl6.idr	Intergenic	(TAA)n|Simple_repeat|Simple_repeat	-1300.0	NM_001160410	545474.0	Mm.214317	NM_001160410	ENSMUSG00000060257	Scrt2	AW060659	scratch family zinc finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-63113365-1	chr10	63112865	63113865	+	551.0	f1_c57bl6.idr	Intergenic	Intergenic	13209.0	NM_016864	53404.0	Mm.228661	NM_016864	ENSMUSG00000036816	Atoh7	Math5|bHLHa13	atonal bHLH transcription factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110156483-1	chr7	110155983	110156983	+	551.0	f1_balb.idr	Intergenic	Intergenic	34424.0	NM_009516	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137426738-1	chr4	137426238	137427238	+	551.0	f1_c57bl6.idr	intron (NM_026419, intron 2 of 7)	B2_Mm1t|SINE|B2	3782.0	NM_026419	67868.0	Mm.297477	NM_026419	ENSMUSG00000023433	Cela3b	0910001F22Rik|2310074F01Rik|AI504000|Ela3|Ela3b	chymotrypsin-like elastase family, member 3B	protein-coding	0.0	1.0	0.5	0.0	1.0	0.0
Merged-chr15-83474674-2	chr15	83474174	83475174	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-10068.0	NM_001358643	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49119680-1	chr7	49119180	49120180	+	551.0	f1_balb.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	42478.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43625742-2	chr7	43625242	43626242	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8997.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80381953-2	chr10	80381453	80382453	+	551.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_198615, exon 2 of 2)	exon (NM_198615, exon 2 of 2)	5698.0	NM_198615	237400.0	Mm.268389	NM_198615	ENSMUSG00000048696	Mex3d	BC059858|Rkhd1	mex3 RNA binding family member D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-25354125-1	chr2	25353625	25354625	+	551.0	f1_balb.idr	intron (NM_031843, intron 8 of 12)	intron (NM_031843, intron 8 of 12)	2207.0	NM_031843	83768.0	Mm.21440	NM_031843	ENSMUSG00000026958	Dpp7	DPPII|Dpp2|QPP	dipeptidylpeptidase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160364593-1	chr2	160364093	160365093	+	551.0	f0_balb.idr	3' UTR (NM_010658, exon 1 of 1)	3' UTR (NM_010658, exon 1 of 1)	2472.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	2.5	23.5	11.0	7.0	31.5	14.5
Merged-chr19-34825908-2	chr19	34825408	34826408	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114339, intron 3 of 6)	MER20|DNA|hAT-Charlie	-5135.0	NR_029783	723826.0		NR_029783	ENSMUSG00000065594	Mir107	Mirn107|mir-107|mmu-mir-107	microRNA 107	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101343365-1	chr7	101342865	101343865	+	551.0	f0_balb.idr	intron (NM_019990, intron 4 of 6)	intron (NM_019990, intron 4 of 6)	-4704.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.0	0.0	2.5	0.0	0.5	0.0
Merged-chr4-148174258-1	chr4	148173758	148174758	+	551.0	f1_c57bl6.idr	Intergenic	Intergenic	13590.0	NM_176848	230904.0	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr9-35422083-1	chr9	35421583	35422583	+	551.0	f1_balb.idr	Intergenic	CpG	-29993.0	NM_021339	57810.0	Mm.80509	NM_021339	ENSMUSG00000038119	Cdon	CDO|Cd0|Orcam	cell adhesion molecule-related/down-regulated by oncogenes	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135508981-2	chr4	135508481	135509481	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030189, intron 3 of 8)	intron (NM_030189, intron 3 of 8)	12994.0	NM_030189	78806.0	Mm.374844	NM_030189	ENSMUSG00000028801	Stpg1	4930403G18Rik|4930555I21Rik|Mapo2	sperm tail PG rich repeat containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105291775-2	chr8	105291275	105292275	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357379, intron 8 of 12)	B2_Mm2|SINE|B2	-2247.0	NM_028888	74356.0	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97625544-1	chr11	97625044	97626044	+	551.0	f1_c57bl6.idr	Intergenic	Intergenic	4172.0	NM_175332	103551.0	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	0.0	0.0	0.5	0.5	7.5	0.5
Merged-chr14-108344744-2	chr14	108344244	108345244	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	569495.0	NM_199065	76965.0	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128966728-1	chr2	128966228	128967228	+	551.0	f0_balb.idr	promoter-TSS (NM_178404)	promoter-TSS (NM_178404)	-674.0	NM_178404	78751.0	Mm.26377	NM_178404	ENSMUSG00000042851	Zc3h6	4631426G04Rik|4833425H18Rik|AU024389|AW060453|Zc3hdc6|mKIAA2035	zinc finger CCCH type containing 6	protein-coding	78.5	174.5	113.5	56.0	155.0	82.0
Merged-chr11-32565972-1	chr11	32565472	32566472	+	551.0	f1_balb.idr	intron (NM_009288, intron 2 of 18)	MER2|DNA|TcMar-Tigger	32706.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	1.5	17.5	12.5	5.5	10.5	12.0
Merged-chr4-32237642-1	chr4	32237142	32238142	+	551.0	f1_c57bl6.idr	Intergenic	Intergenic	-179793.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.0	2.0	0.0	0.0	1.0	1.0
Merged-chr11-116011195-2	chr11	116010695	116011695	+	551.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_016905, exon 2 of 8)	exon (NM_016905, exon 2 of 8)	1524.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105697341-1	chr4	105696841	105697841	+	551.0	f1_balb.idr	Intergenic	Intergenic	539994.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69432840-2	chr11	69432340	69433340	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 73 of 85)	intron (NM_001081330, intron 73 of 85)	-19165.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-9268565-1	chr11	9268065	9269065	+	551.0	f1_c57bl6.idr	intron (NM_178259, intron 9 of 61)	intron (NM_178259, intron 9 of 61)	76623.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	0.0	0.0	1.5	2.5	0.0	1.0
Merged-chr5-130360117-1	chr5	130359617	130360617	+	551.0	f0_balb.idr	Intergenic	RLTR42-int|LTR|ERVK	-9341.0	NM_181045	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0.0	1.5	2.0	1.5	0.0	0.5
Merged-chr6-33682063-1	chr6	33681563	33682563	+	551.0	f0_balb.idr	intron (NM_009148, intron 10 of 17)	intron (NM_009148, intron 10 of 17)	-347385.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8846411-1	chr4	8845911	8846911	+	551.0	f1_balb.idr	intron (NM_001355382, intron 20 of 36)	intron (NM_001355382, intron 20 of 36)	95087.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-67016706-1	chr6	67016206	67017206	+	551.0	f0_balb.idr	intron (NM_001177558, intron 4 of 4)	intron (NM_001177558, intron 4 of 4)	-19893.0	NR_040278	320172.0	Mm.449039	NR_040278	ENSMUSG00000087231	E230016M11Rik	-	RIKEN cDNA E230016M11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-56747980-2	chr18	56747480	56748480	+	551.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010721, exon 9 of 11)	exon (NM_010721, exon 9 of 11)	40167.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-32121127-2	chr5	32120627	32121627	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15345.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-110691884-1	chr12	110691384	110692384	+	551.0	f1_balb.idr	intron (NM_010480, intron 10 of 10)	intron (NM_010480, intron 10 of 10)	4511.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-76977818-2	chr13	76977318	76978318	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030174, intron 17 of 20)	Lx3A|LINE|L1	157650.0	NM_134071	105377.0	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding	2.0	1.0	0.0	0.0	0.0	2.0
Merged-chr16-73604436-2	chr16	73603936	73604936	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	737631.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-149092819-1	chr3	149092319	149093319	+	551.0	f0_balb.idr	Intergenic	Intergenic	-138184.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	2.5	2.0	1.0	0.0	0.0	0.0
Merged-chr15-88145795-1	chr15	88145295	88146295	+	551.0	f0_balb.idr	Intergenic	Intergenic	-169079.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95072191-1	chr9	95071691	95072691	+	551.0	f0_balb.idr	intron (NM_177909, intron 12 of 15)	ORR1F|LTR|ERVL-MaLR	320362.0	NR_106116	102465763.0		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123018595-1	chr8	123018095	123019095	+	551.0	f0_balb.idr	intron (NM_001081379, intron 1 of 12)	MLT1E1A|LTR|ERVL-MaLR	23689.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	2.5	1.0	0.0	0.0	2.5	0.5
Merged-chr4-71431660-1	chr4	71431160	71432160	+	551.0	f1_balb.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	769233.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-72449716-2	chr14	72449216	72450216	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	260287.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-25038775-1	chr10	25038275	25039275	+	551.0	f1_c57bl6.idr	Intergenic	Intergenic	-111305.0	NM_007482	11846.0	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	2.5	0.0	0.5	1.5	3.0	1.5
Merged-chr4-42953352-1	chr4	42952852	42953852	+	551.0	f1_balb.idr	exon (NM_001355440, exon 2 of 4)	exon (NM_001355440, exon 2 of 4)	2956.0	NM_001355440	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101894802-1	chr7	101894302	101895302	+	551.0	f1_c57bl6.idr	intron (NM_001291352, intron 1 of 5)	B1F|SINE|Alu	-1529.0	NM_001291348	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr8-40496489-1	chr8	40495989	40496989	+	551.0	f0_balb.idr	intron (NR_155265, intron 5 of 6)	intron (NR_155265, intron 5 of 6)	13990.0	NM_001361938	18983.0	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	9.5	9.5	10.0	8.5	19.0	11.5
Merged-chr2-158229340-2	chr2	158228840	158229840	+	551.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177657)	promoter-TSS (NM_177657)	-116.0	NM_177657	228846.0	Mm.187574	NM_177657	ENSMUSG00000037813	D630003M21Rik	-	RIKEN cDNA D630003M21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-60468455-2	chr3	60467955	60468955	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4375.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-14170343-2	chr4	14169843	14170843	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	120966.0	NR_131155	100040030.0	Mm.366499	NR_131155		Gm2560	-	predicted gene 2560	ncRNA	4.0	0.0	0.0	0.0	0.5	3.5
Merged-chr16-31080344-1	chr16	31079844	31080844	+	551.0	f1_balb.idr	intron (NM_198626, intron 1 of 3)	intron (NM_198626, intron 1 of 3)	1088.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	1.0	3.0	0.5	0.0	0.5	2.5
Merged-chr2-80617578-1	chr2	80617078	80618078	+	551.0	f0_balb.idr	exon (NM_024438, exon 1 of 4)	exon (NM_024438, exon 1 of 4)	364.0	NM_024438	68082.0	Mm.306818	NM_024438	ENSMUSG00000027001	Dusp19	5930436K22Rik|C79103|SKRP1|TS-DSP1	dual specificity phosphatase 19	protein-coding	6.5	8.0	0.5	1.0	1.5	2.5
Merged-chr19-53427369-1	chr19	53426869	53427869	+	551.0	f1_balb.idr	Intergenic	Intergenic	-36735.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5506769-2	chr17	5506269	5507269	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	14169.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-72417517-1	chr12	72417017	72418017	+	551.0	f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-8463.0	NM_153457	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0.0	1.0	0.0	0.0	1.5	0.5
Merged-chr18-61936986-1	chr18	61936486	61937486	+	551.0	f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-16089.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	4.0	0.0	1.5	0.0	0.0	0.0
Merged-chr1-51767739-2	chr1	51767239	51768239	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010863, intron 22 of 29)	intron (NM_010863, intron 22 of 29)	148239.0	NM_001161817	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr19-39210708-1	chr19	39210208	39211208	+	551.0	f1_balb.idr	Intergenic	RMER13A|LTR|ERVK	-18546.0	NR_033614	638988.0	Mm.483843	NR_033614	ENSMUSG00000093610	Cyp2c53-ps	Cyp2c53|EG638988	cytochrome P450, family 2, subfamily c, polypeptide 53-ps	pseudo	0.0	4.5	0.0	3.5	7.5	0.0
Merged-chr6-125430992-1	chr6	125430492	125431492	+	551.0	f1_balb.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-50488.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	1.5	0.0	1.0	1.0	0.0	2.5
Merged-chr6-88846231-2	chr6	88845731	88846731	+	551.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045880, exon 3 of 3)	non-coding (NR_045880, exon 3 of 3)	3377.0	NR_045880	100038356.0	Mm.442704	NR_045880	ENSMUSG00000085828	Gm15612	-	predicted gene 15612	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34961679-1	chr2	34961179	34962179	+	551.0	f1_c57bl6.idr	promoter-TSS (NM_001326601)	promoter-TSS (NM_001326601)	93.0	NM_009421	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102419164-2	chr5	102418664	102419664	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62227.0	NM_146161	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-91687154-1	chr6	91686654	91687654	+	551.0	f1_c57bl6.idr	intron (NM_009320, intron 1 of 14)	B1_Mus1|SINE|Alu	3087.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-139018246-2	chr1	139017746	139018746	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181347, intron 1 of 20)	Lx2B2|LINE|L1	40589.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-133024149-1	chr1	133023649	133024649	+	551.0	f1_c57bl6.idr	intron (NM_008575, intron 1 of 11)	L1_Mus3|LINE|L1	1267.0	NR_126506	17248.0	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	2.5	8.5	0.0	4.5	0.5	2.0
Merged-chr9-28261573-1	chr9	28261073	28262073	+	551.0	f1_c57bl6.idr	intron (NM_177906, intron 1 of 7)	intron (NM_177906, intron 1 of 7)	470304.0	NM_177906	330908.0	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102605163-1	chr4	102604663	102605663	+	551.0	f0_balb.idr	exon (NM_001177980, exon 10 of 10)	exon (NM_001177980, exon 10 of 10)	15320.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.0	0.0	0.0	13.5	1.0	7.0
Merged-chr8-46871272-1	chr8	46870772	46871772	+	551.0	f0_balb.idr	Intergenic	Arthur1B|DNA|hAT-Tip100	-115615.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53194281-1	chr19	53193781	53194781	+	551.0	f0_balb.idr	intron (NM_013758, intron 1 of 15)	intron (NM_013758, intron 1 of 15)	50284.0	NM_013758	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99285691-2	chr5	99285191	99286191	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32764.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.5	0.0	0.0	0.0	7.5	0.0
Merged-chr4-84837098-1	chr4	84836598	84837598	+	551.0	f0_balb.idr	Intergenic	Intergenic	-47211.0	NM_175275	338349.0	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-20324132-1	chr16	20323632	20324632	+	551.0	f0_balb.idr	intron (NM_183158, intron 1 of 8)	intron (NM_183158, intron 1 of 8)	1272.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53793232-2	chr11	53792732	53793732	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	RMER15|LTR|ERVL	22759.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120640447-2	chr11	120639947	120640947	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144795, intron 6 of 7)	intron (NM_144795, intron 6 of 7)	3223.0	NM_144795	209027.0	Mm.127731	NM_144795	ENSMUSG00000025140	Pycr1	P5CR 1|P5CR1	pyrroline-5-carboxylate reductase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-14315385-1	chr16	14314885	14315885	+	551.0	f1_balb.idr	intron (NM_025345, intron 1 of 4)	intron (NM_025345, intron 1 of 4)	1947.0	NM_025345	66086.0	Mm.42072	NM_025345	ENSMUSG00000022677	Fopnl	0610037P05Rik	Fgfr1op N-terminal like	protein-coding	0.0	9.5	0.0	0.0	3.5	0.0
Merged-chr8-46932886-2	chr8	46932386	46933386	+	550.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-54001.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36760787-2	chr18	36760287	36761287	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_154585, intron 1 of 6)	B4A|SINE|B4	565.0	NR_154585	67936.0	Mm.271719	NM_026464	ENSMUSG00000042660	Wdr55	2410080P20Rik|C80692	WD repeat domain 55	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-10177939-2	chr18	10177439	10178439	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009071, intron 1 of 32)	intron (NM_009071, intron 1 of 32)	3853.0	NM_009071	19877.0	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-47432028-2	chr16	47431528	47432528	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	726471.0	NR_152166	619300.0	Mm.384092	NR_152166		6430553K19Rik	-	RIKEN cDNA 6430553K19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166748239-2	chr2	166747739	166748739	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34407.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47397244-2	chr19	47396744	47397744	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 3 of 14)	RSINE1|SINE|B4	67167.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30640190-2	chr2	30639690	30640690	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37821.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121346228-2	chr5	121345728	121346728	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181421, intron 60 of 75)	intron (NM_181421, intron 60 of 75)	39181.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-96084922-2	chr16	96084422	96085422	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2494.0	NM_145125	93871.0	Mm.240871	NM_145125	ENSMUSG00000022914	Brwd1	5330419I02Rik|D530019K20Rik|G1-403-16|Wdr9|repro5	bromodomain and WD repeat domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29024133-2	chr17	29023633	29024633	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-8527.0	NM_013663	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150751953-2	chr2	150751453	150752453	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355068, intron 1 of 13)	intron (NM_001355068, intron 1 of 13)	2872.0	NM_172117	12497.0	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80384457-2	chr11	80383957	80384957	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045038, intron 1 of 16)	B4|SINE|B4	1178.0	NM_001130171	22680.0	Mm.401332	NM_011751	ENSMUSG00000017421	Zfp207	8430401D15Rik|BuGZ|Zep|Znf207	zinc finger protein 207	protein-coding	1.5	6.5	2.5	1.5	6.5	3.0
Merged-chr5-72829980-2	chr5	72829480	72830480	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 1 of 17)	RMER1A|Other|Other	38468.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101907497-2	chr5	101906997	101907997	+	550.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172882, exon 29 of 67)	exon (NM_172882, exon 29 of 67)	142367.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56611148-2	chr17	56610648	56611648	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1377.0	NM_153152	224904.0	Mm.34002	NM_153152	ENSMUSG00000049760	2410015M20Rik	Mic13|QIL1|sr104	RIKEN cDNA 2410015M20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36106576-2	chr1	36106076	36107076	+	550.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_015818)	TTS (NM_015818)	37737.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25270607-2	chr7	25270107	25271107	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302811, intron 1 of 20)	intron (NM_001302811, intron 1 of 20)	2908.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25119262-2	chr7	25118762	25119762	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163555, intron 4 of 13)	B1F|SINE|Alu	13198.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-37657118-2	chr3	37656618	37657618	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17171.0	NM_011896	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-128160651-2	chr5	128160151	128161151	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172885, intron 2 of 8)	intron (NM_172885, intron 2 of 8)	272426.0	NM_172885	243274.0	Mm.447698	NM_172885	ENSMUSG00000034310	Tmem132d	C630028F04Rik	transmembrane protein 132D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-17001706-2	chr11	17001206	17002206	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	MLTR14|LTR|ERV1	7012.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-17808833-2	chr4	17808333	17809333	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-44060.0	NR_135158	17389.0	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT-MMP 3|MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75044170-2	chr11	75043670	75044670	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 12 of 18)	intron (NM_001002764, intron 12 of 18)	21821.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-22148304-2	chr8	22147804	22148804	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011848, intron 9 of 15)	intron (NM_011848, intron 9 of 15)	14190.0	NM_001162947	23954.0	Mm.41413	NM_011848	ENSMUSG00000031478	Nek3	-	NIMA (never in mitosis gene a)-related expressed kinase 3	protein-coding	0.0	0.0	0.0	5.5	0.5	4.0
Merged-chr6-51939272-1	chr6	51938772	51939772	+	550.5	f0_balb.idr	intron (NM_018773, intron 4 of 12)	intron (NM_018773, intron 4 of 12)	73277.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19005943-2	chr7	19005443	19006443	+	550.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_178757, exon 1 of 1)	exon (NM_178757, exon 1 of 1)	1878.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	0.0	0.0	4.0	0.0	5.0	0.5
Merged-chr16-24414546-2	chr16	24414046	24415046	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 1 of 12)	intron (NM_178665, intron 1 of 12)	-20891.0	NR_037954	68841.0	Mm.361995	NR_037954		Lppos	1110054M08Rik|AI481106	LIM domain containing preferred translocation partner in lipoma, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45597945-2	chr7	45597445	45598445	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	17545.0	NM_020013	56636.0	Mm.143736	NM_020013	ENSMUSG00000030827	Fgf21	-	fibroblast growth factor 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93178045-1	chr10	93177545	93178545	+	550.5	f0_balb.idr	intron (NM_146239, intron 1 of 16)	MER110A|LTR|ERV1	15260.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	4.0	22.0	19.0	0.0	9.0	8.0
Merged-chr12-117375670-2	chr12	117375170	117376170	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR21|LTR|ERVK	-38658.0	NR_044987	432713.0	Mm.459210	NR_044987	ENSMUSG00000101930	Gm5441	-	predicted gene 5441	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-53395571-2	chr19	53395071	53396071	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4937.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-105116885-2	chr12	105116385	105117385	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-30134.0	NM_013775	27381.0	Mm.103653	NM_013775	ENSMUSG00000060863	Tcl1b2	-	T cell leukemia/lymphoma 1B, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-91140919-2	chr10	91140419	91141419	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-16956.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-45321257-2	chr19	45320757	45321757	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-42477.0	NM_001360122	12234.0	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61322126-2	chr18	61321626	61322626	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133249, intron 2 of 11)	L1_Mus3|LINE|L1	75774.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	2.0	8.0	12.0	3.5	12.5	11.5
Merged-chr18-82787269-2	chr18	82786769	82787769	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-28230.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-75279334-2	chr4	75278834	75279834	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1042.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113014024-2	chr13	113013524	113014524	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20156.0	NM_001037914	622408.0	Mm.360976	NM_001037914	ENSMUSG00000074651	Mcidas	EG622408|Gm6320|Idas|Mci|Mcin	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56016888-2	chr17	56016388	56017388	+	550.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026530)	TTS (NM_026530)	7687.0	NM_026530	68047.0	Mm.358710	NM_026530	ENSMUSG00000003199	Mpnd	E130307M08Rik	MPN domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13597281-2	chr8	13596781	13597781	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 5 of 23)	intron (NM_009025, intron 5 of 23)	-34820.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142446585-2	chr5	142446085	142447085	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 2 of 8)	intron (NM_199068, intron 2 of 8)	-17346.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141013251-2	chr7	141012751	141013751	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2507.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29536092-2	chr6	29535592	29536592	+	550.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_012057, exon 7 of 9)	exon (NM_012057, exon 7 of 9)	6810.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3791069-2	chr4	3790569	3791569	+	550.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010747, exon 13 of 13)	3' UTR (NM_010747, exon 13 of 13)	44586.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0.0	2.0	0.5	0.0	0.0	2.0
Merged-chr12-17761912-2	chr12	17761412	17762412	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	71103.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0.0	5.5	0.0	0.0	5.5	0.0
Merged-chr5-5880700-2	chr5	5880200	5881200	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-131383.0	NM_027399	70358.0	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-10405854-2	chr9	10405354	10406354	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170787, intron 3 of 24)	intron (NM_001170787, intron 3 of 24)	498872.0	NM_001033359	244682.0	Mm.187021	NM_001033359	ENSMUSG00000039488	Cntn5	6720426O10Rik|A830025P08Rik|Gm507|NB-2	contactin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143474487-2	chr7	143473987	143474987	+	550.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042760)	promoter-TSS (NM_001042760)	-629.0	NM_001042760	18400.0	Mm.271740	NM_008767	ENSMUSG00000000154	Slc22a18	AW260131|BWR1A|BWSCR1A|HET|ITM|Impt1|Orctl2|Slc22a1l|TSSC5|p45-BWR1A	solute carrier family 22 (organic cation transporter), member 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102836831-2	chr14	102836331	102837331	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	145801.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-142927112-2	chr5	142926612	142927612	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-20358.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-5102480-2	chr16	5101980	5102980	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008909, intron 10 of 21)	intron (NM_008909, intron 10 of 21)	30001.0	NM_008909	19041.0	Mm.266875	NM_008909	ENSMUSG00000039457	Ppl	AW553870	periplakin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-20130445-2	chr3	20129945	20130945	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355261, intron 5 of 7)	intron (NM_001355261, intron 5 of 7)	24671.0	NM_001355261	27357.0	Mm.6375	NM_013755	ENSMUSG00000019528	Gyg	AU017667|GN1|Gyg1	glycogenin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32087094-2	chr2	32086594	32087594	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2425.0	NR_151493	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-64832320-2	chr8	64831820	64832820	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178633, intron 2 of 14)	intron (NM_178633, intron 2 of 14)	17604.0	NM_178633	77113.0	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|8530402H02Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22533595-2	chr16	22533095	22534095	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346673, intron 19 of 23)	intron (NM_001346673, intron 19 of 23)	-1411.0	NR_106170	102465887.0		NR_106170	ENSMUSG00000099071	Mir8095	Gm27566|mmu-mir-8095	microRNA 8095	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10718354-2	chr19	10717854	10718854	+	550.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007650, exon 11 of 11)	3' UTR (NM_007650, exon 11 of 11)	17586.0	NM_001361964	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-82950680-2	chr11	82950180	82951180	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045932, intron 1 of 2)	B4|SINE|B4	-1422.0	NM_183201	327978.0	Mm.42147	NM_183201	ENSMUSG00000054404	Slfn5	AI956840	schlafen 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-27317812-2	chr6	27317312	27318312	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361125, intron 9 of 10)	intron (NM_001361125, intron 9 of 10)	618938.0	NR_030420	735266.0		NR_030420	ENSMUSG00000076067	Mir592	Mirn592|mir-592|mmu-mir-592	microRNA 592	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33754775-2	chr16	33754275	33755275	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 12 of 14)	intron (NM_175256, intron 12 of 14)	-39262.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65226072-2	chr9	65225572	65226572	+	550.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_177460, exon 3 of 7)	exon (NM_177460, exon 3 of 7)	11382.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191740758-2	chr1	191740258	191741258	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134829, intron 2 of 7)	intron (NM_001134829, intron 2 of 7)	22363.0	NM_001134829	226856.0	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-83059041-2	chr6	83058541	83059541	+	550.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_033606, exon 3 of 12)	exon (NM_033606, exon 3 of 12)	1197.0	NM_033606	93838.0	Mm.140332	NM_033606	ENSMUSG00000009145	Dqx1	2310066E11Rik	DEAQ RNA-dependent ATPase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11067571-2	chr16	11067071	11068071	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009223, intron 1 of 1)	intron (NM_009223, intron 1 of 1)	1273.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-25136546-2	chr19	25136046	25137046	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 22 of 47)	intron (NM_028785, intron 22 of 47)	-100429.0	NM_181404	107351.0	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	2.5	12.5	7.5	4.5	6.5	10.5
Merged-chr2-90742970-2	chr2	90742470	90743470	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2400.0	NM_018828	55935.0	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152093104-2	chr2	152092604	152093604	+	550.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001160410, exon 2 of 2)	exon (NM_001160410, exon 2 of 2)	11575.0	NM_001160410	545474.0	Mm.214317	NM_001160410	ENSMUSG00000060257	Scrt2	AW060659	scratch family zinc finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-13404946-2	chr15	13404446	13405446	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-231271.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121588834-2	chr8	121588334	121589334	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-1634.0	NM_026160	67443.0	Mm.28357	NM_026160	ENSMUSG00000031812	Map1lc3b	1010001C15Rik|Atg8|LC3b|Map1lc3	microtubule-associated protein 1 light chain 3 beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-124064325-2	chr7	124063825	124064825	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252072, intron 1 of 1)	intron (NM_001252072, intron 1 of 1)	81144.0	NM_001252072	628779.0	Mm.40210	NM_001252072	ENSMUSG00000078591	Hs3st4	EG628779|Gm6915	heparan sulfate (glucosamine) 3-O-sulfotransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72386823-2	chr6	72386323	72387323	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016794, intron 2 of 2)	ID_B1|SINE|B4	3844.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119457852-2	chr11	119457352	119458352	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	33383.0	NR_153849	78439.0	Mm.440446	NR_153849	ENSMUSG00000109408	A930037H05Rik	Gm44935	RIKEN cDNA A930037H05 gene	ncRNA	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr10-126975735-2	chr10	126975235	126976235	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2982.0	NM_001113470	52468.0	Mm.29490	NM_146012	ENSMUSG00000078429	Ctdsp2	AI586070|D10Ertd73e|OS-4|OS4|SCP2	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121309951-2	chr10	121309451	121310451	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361015, intron 2 of 12)	intron (NM_001361015, intron 2 of 12)	1445.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	5.5	5.0	0.0	0.0	0.0	0.0
Merged-chr11-75682804-1	chr11	75682304	75683304	+	550.0	f1_c57bl6.idr	intron (NM_001277221, intron 1 of 1)	B1_Mur2|SINE|Alu	3545.0	NM_001277221	12928.0	Mm.280125	NM_133656	ENSMUSG00000017776	Crk	Crk-I|Crk-II|Crk-III|Crk3|CrkIII|Crko|c-Crk|p38	v-crk avian sarcoma virus CT10 oncogene homolog	protein-coding	3.5	3.0	2.5	1.5	0.0	2.5
Merged-chr18-30218568-1	chr18	30218068	30219068	+	550.0	f1_c57bl6.idr	Intergenic	Intergenic	-54297.0	NM_181414	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	0.0	0.0	0.0	0.0	1.5	0.5
Merged-chr6-42374844-2	chr6	42374344	42375344	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045169, intron 2 of 3)	intron (NR_045169, intron 2 of 3)	-1576.0	NM_023580	13835.0	Mm.133330	NM_023580	ENSMUSG00000029859	Epha1	5730453L17Rik|AL033318|Eph|Esk	Eph receptor A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6873963-2	chr19	6873463	6874463	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15752.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-75211606-1	chr1	75211106	75212106	+	550.0	f1_c57bl6.idr	promoter-TSS (NM_029010)	promoter-TSS (NM_029010)	777.0	NM_011494	20872.0	Mm.1155	NM_011494	ENSMUSG00000026201	Stk16	EDPK|Krct|MPSK|PKL12|TSF-1	serine/threonine kinase 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51476532-2	chr3	51476032	51477032	+	550.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_053089)	TTS (NM_053089)	-7434.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-13104460-2	chr15	13103960	13104960	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007666, intron 1 of 11)	RSINE1|SINE|B4	69215.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79116483-2	chr11	79115983	79116983	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	29990.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-41785061-2	chr18	41784561	41785561	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	166133.0	NM_029942	77619.0	Mm.30649	NM_029942	ENSMUSG00000056671	Prelid2	1700003A01Rik|C330008K14Rik	PRELI domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34844515-1	chr1	34844015	34845015	+	550.0	f1_balb.idr	Intergenic	Intergenic	-1465.0	NM_001160236	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4530923-2	chr11	4530423	4531423	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028860, intron 2 of 17)	tRNA-Ala-GCA|tRNA|tRNA	63892.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-94511595-1	chr9	94511095	94512095	+	550.0	f1_balb.idr	Intergenic	Lx5|LINE|L1	26486.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	7.5	4.0	7.0	10.5	6.5	4.0
Merged-chr14-65167065-1	chr14	65166565	65167565	+	550.0	f0_balb.idr	Intergenic	Intergenic	-68959.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr2-150136073-1	chr2	150135573	150136573	+	550.0	f1_c57bl6.idr	intron (NM_023266, intron 1 of 2)	intron (NM_023266, intron 1 of 2)	605.0	NM_023266	104348.0	Mm.485851	NM_023266	ENSMUSG00000068134	Zfp120	AI315103|E030042N05Rik|F80|MZF31|Zfp844	zinc finger protein 120	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102396093-1	chr7	102395593	102396593	+	550.0	f0_balb.idr	intron (NM_009287, intron 3 of 11)	L2a|LINE|L2	-45602.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-10896542-2	chr15	10896042	10897042	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55790.0	NM_030888	81799.0	Mm.280158	NM_030888	ENSMUSG00000058914	C1qtnf3	2310005P21Rik|CORS-26|CORS26|CTRP3|Corcs|Cors	C1q and tumor necrosis factor related protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-107045978-1	chr7	107045478	107046478	+	550.0	f1_balb.idr	Intergenic	Intergenic	9842.0	NM_147034	259036.0	Mm.377801	NM_147034	ENSMUSG00000073898	Olfr713	MOR263-1|P3	olfactory receptor 713	protein-coding	10.5	0.0	2.5	5.0	0.5	3.5
Merged-chr9-42146603-1	chr9	42146103	42147103	+	550.0	f1_c57bl6.idr	Intergenic	Intergenic	-22306.0	NM_011436	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	21.5	15.5	3.0	9.0	13.5	0.0
Merged-chr3-106554737-2	chr3	106554237	106555237	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286986, intron 2 of 8)	intron (NM_001286986, intron 2 of 8)	-6935.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	5.0	4.0	11.5	2.0	18.5	5.5
Merged-chr14-59590790-2	chr14	59590290	59591290	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153387, intron 3 of 10)	B2_Mm2|SINE|B2	7169.0	NM_001168537	71891.0	Mm.439850	NM_027986	ENSMUSG00000021982	Cdadc1	2310010M10Rik|AI449174|AI463398|BB130816|NYD-SP15	cytidine and dCMP deaminase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-15984365-2	chr16	15983868	15984868	+	550.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_001355731, intron 7 of 18)	intron (NM_001355731, intron 7 of 18)	97082.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-54882656-1	chr18	54882156	54883156	+	550.0	f1_c57bl6.idr	Intergenic	Intergenic	107524.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-78194652-2	chr2	78194152	78195152	+	550.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_108098)	TTS (NR_108098)	-42895.0	NM_177843	329436.0	Mm.235448	NM_177843		Gm14461	A830093M07	predicted gene 14461	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-74218491-1	chr18	74217991	74218991	+	550.0	f1_c57bl6.idr	intron (NM_028868, intron 5 of 14)	intron (NM_028868, intron 5 of 14)	2279.0	NM_028868	74322.0	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	0.0	0.0	0.5	2.0	1.5	2.0
Merged-chr15-39775776-1	chr15	39775276	39776276	+	550.0	f1_c57bl6.idr	intron (NM_022722, intron 9 of 9)	intron (NM_022722, intron 9 of 9)	-21269.0	NR_045788	100503072.0	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	-	predicted gene 16291	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-58104766-1	chr19	58104266	58105266	+	550.0	f0_balb.idr	intron (NM_181415, intron 28 of 28)	intron (NM_181415, intron 28 of 28)	53599.0	NR_049196	100885835.0		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	0.0	0.5	2.0	0.0	0.5	0.0
Merged-chr4-46137987-1	chr4	46137487	46138487	+	550.0	f0_balb.idr	promoter-TSS (NM_001033201)	promoter-TSS (NM_001033201)	488.0	NM_173033	272027.0	Mm.249594	NM_173033	ENSMUSG00000035495	Tstd2	3010020C06	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	protein-coding	16.0	14.5	6.5	0.0	9.5	11.0
Merged-chr4-33028410-1	chr4	33027910	33028910	+	550.0	f0_balb.idr	non-coding (NR_036602, exon 2 of 2)	non-coding (NR_036602, exon 2 of 2)	2913.0	NR_036602	100504166.0	Mm.426309	NR_036602	ENSMUSG00000085037	4933421O10Rik	-	RIKEN cDNA 4933421O10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35100986-2	chr9	35100486	35101486	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-15742.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-56737366-2	chr5	56736866	56737866	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	980553.0	NR_015588	319216.0	Mm.332387	NR_015588	ENSMUSG00000097216	4932441J04Rik	-	RIKEN cDNA 4932441J04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-64744503-2	chr9	64744003	64745003	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6747.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112656342-1	chr12	112655842	112656842	+	550.0	f1_c57bl6.idr	intron (NM_001331107, intron 12 of 13)	intron (NM_001331107, intron 12 of 13)	3009.0	NR_105904	102465566.0		NR_105904	ENSMUSG00000098380	Mir6939	Gm27498|mmu-mir-6939	microRNA 6939	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139399366-2	chr7	139398866	139399866	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183144, intron 1 of 15)	intron (NM_183144, intron 1 of 15)	-1128.0	NM_001355162	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-88271618-2	chr8	88271118	88272118	+	550.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007406)	promoter-TSS (NM_007406)	-785.0	NM_007406	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0.0	5.0	1.0	2.0	10.5	0.0
Merged-chr10-13473944-2	chr10	13473444	13474444	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	CpG	452.0	NM_001195065	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136907229-1	chr4	136906729	136907729	+	550.0	f0_balb.idr	Intergenic	Intergenic	-8385.0	NM_007572	12259.0	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	3.0	2.0	6.5	2.0	0.0	1.0
Merged-chr9-108259399-2	chr9	108258899	108259899	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276486, intron 1 of 3)	intron (NM_001276486, intron 1 of 3)	4416.0	NM_001276493	13138.0	Mm.7524	NM_010017	ENSMUSG00000039952	Dag1	D9Wsu13e|DG|Dp427|Dp71	dystroglycan 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-83596688-1	chr4	83596188	83597188	+	550.0	f1_c57bl6.idr	intron (NM_001355549, intron 7 of 24)	intron (NM_001355549, intron 7 of 24)	71143.0	NM_001355378	320226.0	Mm.180032	NM_029117	ENSMUSG00000052407	Ccdc171	4930418J05Rik|4930473A06Rik|A330015D16Rik	coiled-coil domain containing 171	protein-coding	0.0	0.0	1.0	0.0	6.5	0.5
Merged-chr6-137748669-2	chr6	137748169	137749169	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011499, intron 7 of 9)	intron (NM_011499, intron 7 of 9)	-5908.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-4251490-1	chr8	4250990	4251990	+	550.0	f1_balb.idr	TTS (NM_001195258)	TTS (NM_001195258)	-1612.0	NM_133968	102209.0	Mm.28452	NM_133968	ENSMUSG00000011837	Snapc2	0610007H10Rik|AU015675	small nuclear RNA activating complex, polypeptide 2	protein-coding	0.0	3.0	0.0	4.5	9.0	1.5
Merged-chr4-115603163-2	chr4	115602663	115603663	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001100181, intron 3 of 12)	intron (NM_001100181, intron 3 of 12)	2225.0	NM_001100181	100040843.0	Mm.482683	NM_001100181	ENSMUSG00000063929	Cyp4a32	-	cytochrome P450, family 4, subfamily a, polypeptide 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-47358579-1	chr14	47358079	47359079	+	550.0	f1_c57bl6.idr	Intergenic	Intergenic	-15281.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	10.0	21.5	23.5	70.5	144.5	62.5
Merged-chr11-23660608-2	chr11	23660108	23661108	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023651, intron 1 of 3)	Lx8|LINE|L1	-5066.0	NM_028956	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39670671-1	chr6	39670171	39671171	+	550.0	f1_balb.idr	intron (NM_139294, intron 4 of 21)	MTD|LTR|ERVL-MaLR	54792.0	NM_139294	109880.0	Mm.245513	NM_139294	ENSMUSG00000002413	Braf	9930012E13Rik|AA120551|AA387315|AA473386|B-raf|Braf-2|Braf2|C230098H17|C87398|D6Ertd631e	Braf transforming gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149804488-2	chr4	149803988	149804988	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30221.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0.0	0.0	0.0	1.5	0.0	0.0
Merged-chr8-70679199-2	chr8	70678699	70679699	+	550.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_015816)	TTS (NM_015816)	5968.0	NM_015816	50783.0	Mm.248188	NM_015816	ENSMUSG00000031848	Lsm4	-	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.0	0.0	0.0	2.5	1.5	0.0
Merged-chr6-46151831-1	chr6	46151331	46152331	+	550.0	f0_balb.idr	intron (NM_001004357, intron 8 of 23)	L1M5|LINE|L1	1091770.0	NM_001004357	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	1.5	5.0	1.5	9.5	0.0	3.5
Merged-chr7-25073629-2	chr7	25073129	25074129	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1260.0	NM_001360067	14809.0	Mm.2879	NM_008168	ENSMUSG00000003378	Grik5	GluK5|GluRgamma2|KA2	glutamate receptor, ionotropic, kainate 5 (gamma 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160431024-2	chr2	160430524	160431524	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-63959.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21036427-1	chr9	21035927	21036927	+	550.0	f1_c57bl6.idr	exon (NM_008319, exon 7 of 11)	exon (NM_008319, exon 7 of 11)	-4099.0	NR_035438	100316681.0		NR_035438	ENSMUSG00000084663	Mir1900	Mirn1900|mmu-mir-1900	microRNA 1900	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-3951479-1	chr9	3950979	3951979	+	550.0	f1_balb.idr	Intergenic	RLTR45|LTR|ERVK	358015.0	NM_026276	67618.0	Mm.33970	NM_026276	ENSMUSG00000025894	Aasdhppt	2010309J24Rik|2810407B07Rik|AASD-PPT|CGI-80|LYS2|LYS5	aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-57353532-1	chr18	57353032	57354032	+	550.0	f1_balb.idr	Intergenic	Intergenic	-1201.0	NM_028447	73137.0	Mm.29889	NM_028447	ENSMUSG00000024594	Prrc1	1190002C06Rik|2310058D16Rik|3110038B19Rik|9430085A19Rik	proline-rich coiled-coil 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-84169002-2	chr11	84168502	84169502	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1526.0	NM_001037932	628813.0	Mm.390389	NM_001037932	ENSMUSG00000051452	Gm11437	AI463690	predicted gene 11437	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72658164-2	chr6	72657664	72658664	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001079822, intron 3 of 12)	B2_Mm2|SINE|B2	28333.0	NR_040421	100038714.0	Mm.321330	NR_040421		Gm15401	-	predicted gene 15401	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79160328-2	chr11	79159828	79160828	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-13855.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-172369316-2	chr2	172368816	172369816	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291185, intron 1 of 8)	intron (NM_001291185, intron 1 of 8)	1254.0	NM_001291185	20878.0	Mm.249363	NM_011497	ENSMUSG00000027496	Aurka	AIRK1|ARK-1|AU019385|AW539821|Ark1|Aurora-A|Ayk1|IAK|IAK1|Stk6	aurora kinase A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-108573599-1	chr6	108573099	108574099	+	550.0	f1_balb.idr	Intergenic	Intergenic	49568.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	4.0	1.0	0.0	10.0	4.0	7.0
Merged-chr2-142702093-2	chr2	142701593	142702593	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 23 of 26)	intron (NM_001355123, intron 23 of 26)	199371.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126824398-1	chr7	126823898	126824898	+	550.0	f1_c57bl6.idr	promoter-TSS (NM_001146347)	promoter-TSS (NM_001146347)	-255.0	NM_001146347	68952.0	Mm.440393	NM_026884	ENSMUSG00000058966	Fam57b	1500016O10Rik|A330104J06Rik|AI413816|AW060769	family with sequence similarity 57, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-103307130-2	chr9	103306630	103307630	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176979, intron 2 of 27)	PB1D10|SINE|Alu	1803.0	NM_176979	235559.0	Mm.259893	NM_176979	ENSMUSG00000032555	Topbp1	1110031N14Rik|2810429C13Rik|AI256758|D430026L04Rik|mKIAA0259	topoisomerase (DNA) II binding protein 1	protein-coding	0.0	2.0	0.5	0.0	2.5	1.0
Merged-chr4-144965162-1	chr4	144964662	144965662	+	550.0	f1_c57bl6.idr	Intergenic	Intergenic	72025.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-145950192-1	chr3	145949692	145950692	+	550.0	f0_balb.idr	Intergenic	Intergenic	12178.0	NR_151446	66421.0	Mm.25137	NM_025555	ENSMUSG00000036873	2410004B18Rik	4930572C24Rik	RIKEN cDNA 2410004B18 gene	protein-coding	4.0	0.0	0.0	5.0	0.0	0.0
Merged-chr11-98005231-2	chr11	98004731	98005731	+	550.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001159320, exon 12 of 12)	exon (NM_001159320, exon 12 of 12)	-9058.0	NR_152188	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-109552740-1	chr5	109552240	109553240	+	550.0	f1_balb.idr	Intergenic	Intergenic	6253.0	NM_016715	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	5.5	0.5	2.0	0.0	5.5	0.0
Merged-chr16-3254866-2	chr16	3254366	3255366	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-337532.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61449430-1	chr18	61448930	61449930	+	550.0	f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	35177.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	43.5	125.5	81.0	41.5	114.5	76.5
Merged-chr4-115840662-1	chr4	115840162	115841162	+	550.0	f1_balb.idr	intron (NM_001355174, intron 1 of 11)	intron (NM_001355174, intron 1 of 11)	1464.0	NM_001355174	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	3.5	1.0	3.0	3.0	1.0	3.0
Merged-chr14-46713474-1	chr14	46712974	46713974	+	550.0	f1_balb.idr	Intergenic	Intergenic	-39699.0	NR_131909	328385.0	Mm.271545	NR_131909	ENSMUSG00000115015	D330046F09Rik	Gm808	RIKEN cDNA D330046F09 gene	ncRNA	8.0	0.0	3.5	12.0	11.0	4.5
Merged-chr4-149208529-1	chr4	149208029	149209029	+	550.0	f1_balb.idr	intron (NM_207682, intron 30 of 46)	intron (NM_207682, intron 30 of 46)	-41824.0	NM_001081274	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38737145-1	chr6	38736645	38737645	+	550.0	f1_balb.idr	intron (NM_010433, intron 7 of 14)	intron (NM_010433, intron 7 of 14)	74076.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76325130-1	chr16	76324630	76325630	+	550.0	f0_balb.idr	intron (NM_001358238, intron 3 of 3)	intron (NM_001358238, intron 3 of 3)	47919.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-124380502-1	chr14	124380002	124381002	+	550.0	f1_balb.idr	intron (NM_207667, intron 1 of 4)	Lx|LINE|L1	-187956.0	NM_010201	14169.0	Mm.206362	NM_010201	ENSMUSG00000025551	Fgf14	FHF-4|Fhf4|Tg(tetO-MAPT*P301L)4510Kha|mFHF-4(1B)	fibroblast growth factor 14	protein-coding	1.0	0.0	0.0	1.0	0.0	0.0
Merged-chr9-16267523-1	chr9	16267023	16268023	+	550.0	f0_balb.idr	intron (NM_001080814, intron 1 of 24)	intron (NM_001080814, intron 1 of 24)	110708.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120070680-1	chr11	120070180	120071180	+	550.0	f1_balb.idr	intron (NM_009734, intron 14 of 25)	intron (NM_009734, intron 14 of 25)	16147.0	NM_009734	12009.0	Mm.2556	NM_009734	ENSMUSG00000039781	Cep131	AZ1|Azi|Azi1	centrosomal protein 131	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr18-30362467-1	chr18	30361967	30362967	+	550.0	f1_c57bl6.idr	Intergenic	Intergenic	89602.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	2.0	0.0	0.0	0.0	1.5	0.0
Merged-chr12-111294373-1	chr12	111293873	111294873	+	550.0	f1_c57bl6.idr	intron (NM_183016, intron 36 of 36)	intron (NM_183016, intron 36 of 36)	23277.0	NM_033603	93835.0	Mm.197639	NM_033603	ENSMUSG00000021278	Amn	-	amnionless	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32220243-1	chr19	32219743	32220743	+	550.0	f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	-9230.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-36937573-1	chr14	36937073	36938073	+	550.0	f0_balb.idr	intron (NM_027045, intron 3 of 10)	intron (NM_027045, intron 3 of 10)	-2005.0	NM_028407	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-100192866-1	chr6	100192366	100193366	+	550.0	f0_balb.idr	Intergenic	Intergenic	94492.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49074624-1	chr7	49074124	49075124	+	550.0	f0_balb.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	87534.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-89540673-1	chr13	89540173	89541173	+	550.0	f1_c57bl6.idr	promoter-TSS (NM_013500)	promoter-TSS (NM_013500)	37.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr2-59466409-2	chr2	59465909	59466909	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR10A|LTR|ERVK	-18244.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-92976893-1	chr14	92976393	92977393	+	550.0	f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	913776.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.0	0.0	1.5	0.5	11.0	7.0
Merged-chr8-95749166-2	chr8	95748666	95749666	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205226, intron 22 of 48)	intron (NM_001205226, intron 22 of 48)	4048.0	NR_106041	102465650.0		NR_106041	ENSMUSG00000106145	Mir7073	mmu-mir-7073	microRNA 7073	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151996668-1	chr1	151996168	151997168	+	550.0	f1_balb.idr	intron (NM_197990, intron 2 of 5)	Lx8|LINE|L1	93652.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-69165859-2	chr16	69165359	69166359	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	634522.0	NR_130991	78110.0	Mm.211406	NR_130991	ENSMUSG00000107073	4930428D20Rik	Gm43265	RIKEN cDNA 4930428D20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81290246-1	chr7	81289746	81290746	+	550.0	f1_c57bl6.idr	intron (NM_008803, intron 3 of 21)	intron (NM_008803, intron 3 of 21)	54988.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-49840983-2	chr16	49840483	49841483	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR18_MM|LTR|ERVK	-14671.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-29680923-2	chr4	29680423	29681423	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	612844.0	NR_151693	102634169.0		NR_151693		Gm11917	-	predicted gene 11917	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6867045-2	chr19	6866545	6867545	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8834.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-57128953-2	chr17	57128453	57129453	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	20824.0	NM_011617	21948.0	Mm.42228	NM_011617	ENSMUSG00000019489	Cd70	CD27LG|Cd27l|Tnfsf7|Tnlg8a	CD70 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117742081-1	chr10	117741581	117742581	+	550.0	f1_c57bl6.idr	intron (NM_029875, intron 2 of 4)	intron (NM_029875, intron 2 of 4)	4277.0	NM_029875	215436.0	Mm.256753	NM_029875	ENSMUSG00000060181	Slc35e3	9330166G04Rik|AI481200	solute carrier family 35, member E3	protein-coding	2.0	0.0	2.5	0.0	1.5	0.0
Merged-chr13-23724968-1	chr13	23724468	23725468	+	550.0	f0_balb.idr	Intergenic	RMER17A2|LTR|ERVK	-13839.0	NM_015786	50708.0	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	7.5	0.0	3.0	1.5	0.0	0.0
Merged-chr18-83829084-1	chr18	83828584	83829584	+	550.0	f1_balb.idr	Intergenic	Intergenic	257478.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102985223-1	chr14	102984723	102985723	+	550.0	f1_balb.idr	Intergenic	L2a|LINE|L2	-2586.0	NM_177715	239217.0	Mm.246466	NM_177715	ENSMUSG00000098557	Kctd12	AU046135|AW538430|Pfet1|Pfetin	potassium channel tetramerisation domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84934139-2	chr2	84933639	84934639	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2507.0	NM_021398	58207.0	Mm.290729	NM_021398	ENSMUSG00000027074	Slc43a3	Eeg1|SEEEG-1	solute carrier family 43, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25893398-2	chr15	25892898	25893898	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 2 of 8)	intron (NM_001034851, intron 2 of 8)	-40154.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-79697038-1	chr1	79696538	79697538	+	550.0	f1_c57bl6.idr	Intergenic	Intergenic	-25066.0	NM_183027	252903.0	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	2.0	2.0	0.0	6.0	0.0	0.0
Merged-chr1-85800006-1	chr1	85799506	85800506	+	550.0	f0_balb.idr	intron (NM_001355046, intron 2 of 9)	intron (NM_001355046, intron 2 of 9)	5989.0	NM_001355047	12283.0	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36323919-1	chr18	36323419	36324419	+	550.0	f1_balb.idr	Intergenic	Intergenic	23818.0	NM_001267796	109169.0	Mm.426423	NM_001267796	ENSMUSG00000110185	Igip	6330403M23Rik	IgA inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr1-9810850-2	chr1	9810350	9811350	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177547, intron 1 of 16)	intron (NM_177547, intron 1 of 16)	12720.0	NM_177547	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70850856-2	chr11	70850347	70851347	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291143, intron 2 of 18)	L2a|LINE|L2	6086.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	9.0	2.0	3.5	3.0	0.0	0.5
Merged-chr19-53646868-2	chr19	53646368	53647368	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30438.0	NM_001170847	73713.0	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-83726915-2	chr7	83726415	83727415	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 1 of 18)	C-rich|Low_complexity|Low_complexity	5483.0	NM_001360087	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr16-4458166-1	chr16	4457666	4458666	+	550.0	f0_balb.idr	Intergenic	L1MB7|LINE|L1	-37668.0	NM_009624	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85667174-2	chr12	85666674	85667674	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-19546.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127523901-1	chr10	127523401	127524401	+	550.0	f1_balb.idr	Intergenic	B1_Mur4|SINE|Alu	-1457.0	NM_028230	108037.0	Mm.29890	NM_028230	ENSMUSG00000025403	Shmt2	2700043D08Rik|AA408223|AA986903|SHMT	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44863095-2	chr7	44862595	44863595	+	550.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_021549)	TTS (NM_021549)	5692.0	NM_001290767	59047.0	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-68794173-2	chr3	68793673	68794673	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32678.0	NR_153374	102639225.0	Mm.109095	NR_153374	ENSMUSG00000102936	Gm35584	-	predicted gene, 35584	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127788486-2	chr3	127787984	127788984	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1388.0	NM_145133	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	12.0	22.0	25.0	11.0	36.5	19.5
Merged-chr3-58413633-1	chr3	58413133	58414133	+	550.0	f1_c57bl6.idr	Intergenic	Intergenic	-1087.0	NM_001081229	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154858595-1	chr4	154858095	154859095	+	550.0	f1_balb.idr	intron (NM_172878, intron 2 of 6)	intron (NM_172878, intron 2 of 6)	2395.0	NM_172878	242800.0	Mm.72944	NM_172878	ENSMUSG00000046637	Ttc34	4932418L02|B230396O12Rik	tetratricopeptide repeat domain 34	protein-coding	0.0	0.0	2.0	2.5	0.0	1.0
Merged-chr10-99159109-2	chr10	99158609	99159609	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027740, intron 9 of 11)	intron (NM_027740, intron 9 of 11)	50974.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-64343694-2	chr2	64343194	64344194	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-245656.0	NM_001267847	60344.0	Mm.130769	NM_021716	ENSMUSG00000075324	Fign	fi|fidget	fidgetin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115408971-1	chr11	115408471	115409471	+	550.0	f1_balb.idr	intron (NM_001361462, intron 2 of 4)	intron (NM_001361462, intron 2 of 4)	5219.0	NR_154991	68572.0	Mm.271062	NM_026729	ENSMUSG00000018858	Mrpl58	1110001A02Rik|1110002E03Rik|Ict1|MRP-L58	mitochondrial ribosomal protein L58	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr7-47151603-2	chr7	47151103	47152103	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17919.0	NM_013643	19259.0	Mm.4654	NM_013643	ENSMUSG00000030854	Ptpn5	Step	protein tyrosine phosphatase, non-receptor type 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91403251-1	chr16	91402751	91403751	+	550.0	f1_c57bl6.idr	intron (NM_010509, intron 8 of 8)	intron (NM_010509, intron 8 of 8)	-2984.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-75001292-1	chr18	75000792	75001792	+	550.0	f0_balb.idr	TTS (NR_028552).2	TTS (NR_028552).2	224.0	NR_028552	100217457.0		NR_028552	ENSMUSG00000064871	Snord58b	MBII-199	small nucleolar RNA, C/D box 58B	snoRNA	76.5	178.5	169.0	43.0	93.5	79.5
Merged-chr2-30267635-1	chr2	30267135	30268135	+	550.0	f1_c57bl6.idr	intron (NM_001252571, intron 1 of 9)	intron (NM_001252571, intron 1 of 9)	816.0	NM_001252570	227696.0	Mm.297949	NM_172267	ENSMUSG00000079484	Phyhd1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34852219-2	chr1	34851719	34852719	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145516, intron 1 of 7)	intron (NM_145516, intron 1 of 7)	2230.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-79717076-1	chr7	79716576	79717576	+	550.0	f1_c57bl6.idr	Intergenic	RLTR53_Mm|LTR|ERVK	-2890.0	NM_001291222	16576.0	Mm.101633	NM_010626	ENSMUSG00000050382	Kif7	-	kinesin family member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-151864714-1	chr3	151864214	151865214	+	550.0	f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-27186.0	NM_008966	19220.0	Mm.331442	NM_008966	ENSMUSG00000028036	Ptgfr	AI957154|PGF|fp	prostaglandin F receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118747506-1	chr9	118747006	118748006	+	550.0	f1_balb.idr	intron (NM_001113514, intron 1 of 13)	MIR|SINE|MIR	35814.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	1.0	10.5	12.0	5.5	15.5	7.5
Merged-chr13-48564856-2	chr13	48564356	48565356	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-26584.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-145207327-1	chr5	145206827	145207827	+	550.0	f1_balb.idr	intron (NM_001359191, intron 1 of 5)	intron (NM_001359191, intron 1 of 5)	2768.0	NM_001359188	22757.0	Mm.332842	NM_016683	ENSMUSG00000055991	Zkscan5	AI132486|AI326970|Zfp95|hKraba1	zinc finger with KRAB and SCAN domains 5	protein-coding	0.0	0.0	2.0	1.5	1.5	1.0
Merged-chr6-29253020-2	chr6	29252520	29253520	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-19468.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67631516-2	chr10	67631016	67632016	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-59557.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-10953027-1	chr4	10952527	10953527	+	550.0	f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	54592.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	42.5	47.5	34.5	33.5	56.5	27.0
Merged-chr12-38845986-1	chr12	38845486	38846486	+	550.0	f0_balb.idr	intron (NM_001347379, intron 7 of 11)	intron (NM_001347379, intron 7 of 11)	62275.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36308781-1	chr1	36308281	36309281	+	550.0	f0_balb.idr	intron (NM_001290727, intron 1 of 5)	intron (NM_001290727, intron 1 of 5)	1048.0	NM_001172205	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26559098-1	chr2	26558598	26559598	+	550.0	f0_balb.idr	Intergenic	Intergenic	-21958.0	NM_178444	353156.0	Mm.268933	NM_178444	ENSMUSG00000026921	Egfl7	VE-statin|Zneu1	EGF-like domain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29310194-2	chr7	29309694	29310694	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013874, intron 3 of 11)	URR1A|DNA|hAT-Charlie	6189.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	0.0	0.0	1.5	0.0	0.0	1.5
Merged-chr13-77044579-1	chr13	77044079	77045079	+	550.0	f0_balb.idr	intron (NM_134071, intron 20 of 20)	intron (NM_134071, intron 20 of 20)	90889.0	NM_134071	105377.0	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding	8.0	7.5	3.5	12.5	13.5	30.5
Merged-chr1-131062928-1	chr1	131062428	131063428	+	550.0	f1_balb.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	34915.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	4.0	0.0	10.0	6.0	2.0	8.0
Merged-chr7-36695972-1	chr7	36695472	36696472	+	550.0	f1_c57bl6.idr	Intergenic	CpG	-2146.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	0.0	0.0	2.5	0.0	2.0	0.0
Merged-chr10-121972729-2	chr10	121972229	121973229	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081037, intron 1 of 21)	intron (NM_001081037, intron 1 of 21)	74586.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160333256-1	chr2	160332756	160333756	+	550.0	f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-5762.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0.0	0.0	0.0	1.5	5.0	0.5
Merged-chr16-91167103-1	chr16	91166603	91167603	+	550.0	f1_c57bl6.idr	Intergenic	Intergenic	-58447.0	NM_016967	50913.0	Mm.37289	NM_016967	ENSMUSG00000039830	Olig2	AI604895|Bhlhb1|Olg-2|Oligo2|RK17|bHLHe19	oligodendrocyte transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-102479141-2	chr9	102478641	102479641	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26997.0	NM_024291	16716.0	Mm.101692	NM_024291	ENSMUSG00000035606	Ky	CD1|D9Mgc44e|ky	kyphoscoliosis peptidase	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr6-124845605-1	chr6	124845105	124846105	+	550.0	f1_c57bl6.idr	exon (NM_013534, exon 11 of 15)	exon (NM_013534, exon 11 of 15)	-5330.0	NM_013530	14695.0	Mm.68889	NM_013530	ENSMUSG00000023439	Gnb3	Gnb-3	guanine nucleotide binding protein (G protein), beta 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102427268-2	chr7	102426768	102427768	+	550.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009287, exon 10 of 12)	exon (NM_009287, exon 10 of 12)	-14427.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-105539793-1	chr12	105539293	105540293	+	550.0	f1_balb.idr	Intergenic	Intergenic	-23379.0	NM_009747	12062.0	Mm.390475	NM_009747	ENSMUSG00000021070	Bdkrb2	B(2)|B2|B2R|BK-2|BK2|BK2R|BKR2|BRB2	bradykinin receptor, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	1.5
Merged-chr10-37135764-1	chr10	37135264	37136264	+	550.0	f1_balb.idr	3' UTR (NM_008538, exon 2 of 2)	3' UTR (NM_008538, exon 2 of 2)	3162.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-95578636-1	chr9	95578136	95579136	+	550.0	f0_balb.idr	Intergenic	Intergenic	18819.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120483180-2	chr11	120482680	120483680	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159328, intron 21 of 21)	intron (NM_001159328, intron 21 of 21)	-1457.0	NM_027204	56282.0	Mm.133851	NM_027204	ENSMUSG00000039640	Mrpl12	0610034O11Rik|1500031N16Rik|L12mt|MRP-L12|Rpml12	mitochondrial ribosomal protein L12	protein-coding	0.0	0.0	1.0	0.0	0.0	4.0
Merged-chr4-126537778-2	chr4	126537278	126538278	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4320.0	NM_153177	76850.0	Mm.86705	NM_153177	ENSMUSG00000042500	Ago4	5730550L01Rik|AI481660|Eif2c4	argonaute RISC catalytic subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-120120210-2	chr1	120119710	120120710	+	550.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172074)	promoter-TSS (NM_001172074)	709.0	NM_001037999	13167.0	Mm.2785	NM_007830	ENSMUSG00000026385	Dbi	ACBD1|Acbp|EP|endozepine	diazepam binding inhibitor	protein-coding	22.5	43.0	31.5	22.5	39.5	32.5
Merged-chr16-91518779-1	chr16	91518279	91519279	+	550.0	f1_c57bl6.idr	Intergenic	B4|SINE|B4	8765.0	NR_105786	102465190.0		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	3.0	0.5	2.5	0.0	0.0	2.5
Merged-chr4-21878210-1	chr4	21877710	21878710	+	550.0	f1_c57bl6.idr	Intergenic	Intergenic	-1436.0	NM_172687	230027.0	Mm.5662	NM_172687	ENSMUSG00000028247	Coq3	4732433J24|C77934	coenzyme Q3 methyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47176869-2	chr19	47176369	47177369	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCCC)n|Simple_repeat|Simple_repeat	-1951.0	NM_021360	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-61583299-1	chr16	61582799	61583799	+	550.0	f1_balb.idr	Intergenic	Intergenic	-977768.0	NM_007938	13840.0	Mm.455790	NM_007938	ENSMUSG00000055540	Epha6	Ehk2|Hek12|m-ehk2	Eph receptor A6	protein-coding	0.0	1.5	1.0	0.0	4.5	0.0
Merged-chr6-124256480-1	chr6	124255980	124256980	+	550.0	f1_c57bl6.idr	Intergenic	Intergenic	-24696.0	NM_001104642	232367.0	Mm.469872	NM_001104642	ENSMUSG00000072778	Vmn2r27	EG232367	vomeronasal 2, receptor27	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152225574-2	chr2	152225074	152226074	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1266.0	NM_007788	12995.0	Mm.23692	NM_007788	ENSMUSG00000074698	Csnk2a1	CK2|Csnk2a1-rs4	casein kinase 2, alpha 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-157382118-1	chr1	157381618	157382618	+	550.0	f0_balb.idr	intron (NM_177644, intron 1 of 17)	B4A|SINE|B4	-30234.0	NR_027984	69953.0	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	4.0	12.0	18.0	19.0	12.0	10.0
Merged-chr15-36232270-2	chr15	36231770	36232770	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_012031, intron 16 of 18)	intron (NM_012031, intron 16 of 18)	7894.0	NR_106173	102465888.0		NR_106173	ENSMUSG00000098457	Mir8097	Gm27497|mmu-mir-8097	microRNA 8097	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165195203-2	chr1	165194703	165195703	+	550.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145512)	promoter-TSS (NM_145512)	-765.0	NR_151712	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-38335786-1	chr11	38335286	38336286	+	550.0	f1_c57bl6.idr	Intergenic	Intergenic	184259.0	NR_040295	100502917.0	Mm.61144	NR_040295		Gm12130	-	predicted gene 12130	ncRNA	1.5	5.5	0.0	1.5	0.0	3.0
Merged-chr10-61366133-1	chr10	61365633	61366633	+	550.0	f1_balb.idr	intron (NM_013753, intron 1 of 19)	intron (NM_013753, intron 1 of 19)	17390.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-53816118-1	chr1	53815618	53816618	+	550.0	f0_balb.idr	intron (NM_001001883, intron 28 of 28)	intron (NM_001001883, intron 28 of 28)	-30903.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-38344695-1	chr9	38344195	38345195	+	550.0	f1_balb.idr	Intergenic	Lx2B2|LINE|L1	-4390.0	NM_146871	258871.0	Mm.377729	NM_146871	ENSMUSG00000094588	Olfr898	MOR170-3	olfactory receptor 898	protein-coding	2.5	1.5	2.0	5.0	10.0	3.0
Merged-chr12-73842622-2	chr12	73842122	73843122	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58702.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43005410-2	chr4	43004910	43005910	+	549.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_053081, intron 8 of 13)	intron (NM_053081, intron 8 of 13)	4891.0	NM_001163233	60534.0	Mm.23122	NM_053081	ENSMUSG00000028453	Fancg	AU041407|Xrcc9	Fanconi anemia, complementation group G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64190609-3	chr13	64190105	64191105	+	549.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28739.0	NM_019986	56541.0	Mm.40989	NM_019986	ENSMUSG00000021476	Habp4	4933413D03Rik|4933428J01Rik	hyaluronic acid binding protein 4	protein-coding	0.5	0.0	1.0	1.0	0.0	1.5
Merged-chr16-4614506-2	chr16	4614006	4615006	+	549.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_031184, exon 7 of 7)	3' UTR (NM_031184, exon 7 of 7)	10440.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-72939301-2	chr11	72938801	72939801	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-21868.0	NM_016745	53313.0	Mm.6306	NM_016745	ENSMUSG00000020788	Atp2a3	SERCA3b|Serca3	ATPase, Ca++ transporting, ubiquitous	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-33151482-2	chr12	33150982	33151982	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028139, intron 2 of 3)	intron (NM_028139, intron 2 of 3)	3796.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50185322-2	chr17	50184822	50185822	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 1 of 9)	intron (NM_181397, intron 1 of 9)	5175.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	2.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-20969605-2	chr6	20969105	20970105	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-246504.0	NM_019697	16508.0	Mm.425316	NM_019697	ENSMUSG00000060882	Kcnd2	AI839615|AW555701|Kv4.2|R75121|mKIAA1044	potassium voltage-gated channel, Shal-related family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4500205-2	chr2	4499705	4500705	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 5 of 23)	intron (NM_001177843, intron 5 of 23)	-59549.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117820625-2	chr10	117820125	117821125	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 4 of 7)	intron (NM_024457, intron 4 of 7)	25349.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-25507460-2	chr14	25506960	25507960	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 2 of 23)	intron (NM_183208, intron 2 of 23)	-26979.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28740065-2	chr17	28739565	28740565	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168513, intron 9 of 11)	intron (NM_001168513, intron 9 of 11)	-29252.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-128312394-2	chr3	128311894	128312894	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80789.0	NR_045704	402774.0	Mm.209170	NR_045704	ENSMUSG00000105816	D030025E07Rik	-	RIKEN cDNA D030025E07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99526405-2	chr12	99525905	99526905	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37436.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-69669953-2	chr18	69669453	69670453	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 15 of 19)	intron (NM_001361128, intron 15 of 19)	-255606.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-96947321-2	chr7	96946821	96947821	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	-4206.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	8.5	4.5	7.5	5.0	21.5	7.0
Merged-chr6-86577654-2	chr6	86577154	86578154	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50253.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	0.0	9.0	0.5	0.0	9.5	1.0
Merged-chr9-98977581-2	chr9	98977081	98978081	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8792.0	NM_011810	23873.0	Mm.74605	NM_011810	ENSMUSG00000032463	Faim	-	Fas apoptotic inhibitory molecule	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-8635889-2	chr16	8635389	8636389	+	549.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_025708, exon 2 of 2)	exon (NM_025708, exon 2 of 2)	1812.0	NM_025708	66690.0	Mm.10068	NM_025708	ENSMUSG00000043140	Tmem186	2810440M13Rik|4432406C05Rik|AI648175|AW210586	transmembrane protein 186	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-11298948-2	chr17	11298448	11299448	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016694, intron 3 of 11)	L1_Mus1|LINE|L1	458589.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-123754525-2	chr9	123754025	123755025	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12686.0	NM_009913	12769.0	Mm.440604	NM_009913	ENSMUSG00000029530	Ccr9	A130091K22Rik|Cmkbr10|GPR-9-6	chemokine (C-C motif) receptor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91395583-2	chr16	91395083	91396083	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 7 of 7)	MER21C|LTR|ERVL	-10652.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45429191-2	chr7	45428691	45429691	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011304, intron 4 of 14)	intron (NM_011304, intron 4 of 14)	5273.0	NM_011304	20174.0	Mm.34410	NM_011304	ENSMUSG00000003868	Ruvbl2	mp47|p47	RuvB-like protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77548735-2	chr10	77548235	77549235	+	549.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008404, exon 6 of 16)	exon (NM_008404, exon 6 of 16)	18387.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118835168-2	chr9	118834668	118835668	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 6 of 13)	intron (NM_001113514, intron 6 of 13)	-91368.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148550105-2	chr5	148549605	148550605	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	1568.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	17.0	13.0	16.5	14.0	12.0	14.0
Merged-chr2-163647072-2	chr2	163646572	163647572	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16B2|LTR|ERVK	-1929.0	NM_012032	26943.0	Mm.218473	NM_012032	ENSMUSG00000017707	Serinc3	AA959945|AA960047|AIGP1|DIFF33|TMS-1|Tde1	serine incorporator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17868576-2	chr17	17868083	17869083	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-13395.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	20.0	82.5	39.0	21.0	84.5	58.0
Merged-chr1-89077943-2	chr1	89077443	89078443	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133816, intron 1 of 5)	intron (NM_133816, intron 1 of 5)	7528.0	NM_133816	98402.0	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72901095-2	chr6	72900595	72901595	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1116.0	NM_019715	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	7.0	16.5	17.0	2.5	10.5	11.0
Merged-chr11-94348664-2	chr11	94348164	94349164	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 29 of 30)	RSINE1|SINE|B4	20663.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99382268-2	chr15	99381768	99382768	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10679.0	NM_026669	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-38783651-2	chr12	38783151	38784151	+	549.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163154)	promoter-TSS (NM_001163154)	-60.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-124844681-1	chr8	124844181	124845181	+	549.5	f0_balb.idr	intron (NM_025615, intron 2 of 6)	intron (NM_025615, intron 2 of 6)	18348.0	NM_025615	66523.0	Mm.436864	NM_025615	ENSMUSG00000031984	2810004N23Rik	3110004G14Rik|Ayu21-55|Gt(pU21)55Imeg|GtAyu21-55	RIKEN cDNA 2810004N23 gene	protein-coding	3.5	13.0	6.5	41.5	41.0	28.5
Merged-chr10-115324378-2	chr10	115323878	115324878	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-8787.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-136425470-2	chr3	136424970	136425970	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	23879.0	NR_040592	70055.0	Mm.261063	NR_040592	ENSMUSG00000099508	1700030L20Rik	-	RIKEN cDNA 1700030L20 gene	ncRNA	2.5	2.0	1.5	5.5	5.5	5.5
Merged-chr11-21033510-2	chr11	21033010	21034010	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57814.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-5952096-2	chr15	5951596	5952596	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92608.0	NR_155428	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50928723-2	chr14	50928223	50929223	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033271, intron 6 of 6)	intron (NM_001033271, intron 6 of 6)	2126.0	NM_001310506	219024.0	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161|Pip4p1	transmembrane protein 55b	protein-coding	3.0	5.0	9.0	5.5	21.0	6.0
Merged-chr10-39182402-2	chr10	39181902	39182902	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-18608.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-86712067-2	chr5	86711567	86712567	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172880, intron 8 of 9)	Lx5c|LINE|L1	33740.0	NM_172880	243084.0	Mm.130801	NM_172880	ENSMUSG00000054537	Tmprss11e	A030012E10|AY787860|DESC1|TTSP	transmembrane protease, serine 11e	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-31968137-2	chr19	31967637	31968637	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99376.0	NM_001081074	69865.0	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-64098373-2	chr2	64097873	64098873	+	549.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001267847)	promoter-TSS (NM_001267847)	-335.0	NM_001267847	60344.0	Mm.130769	NM_021716	ENSMUSG00000075324	Fign	fi|fidget	fidgetin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9865453-2	chr3	9864953	9865953	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31774.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.0	4.5	2.0	0.0	0.0	3.5
Merged-chr10-78411967-2	chr10	78411467	78412467	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010925, intron 1 of 12)	intron (NM_010925, intron 1 of 12)	1076.0	NM_010925	18114.0	Mm.38344	NM_010925	ENSMUSG00000061032	Rrp1	AL033305|AL033306|AU018604|NNP-1|Nnp1	ribosomal RNA processing 1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148041425-2	chr2	148040925	148041925	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4039.0	NM_001291067	15376.0	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	1.5	0.0	1.0	9.0	0.0	0.0
Merged-chr15-100639993-2	chr15	100639493	100640493	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3053.0	NM_001033872	207818.0	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98635572-2	chr11	98635118	98636118	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001007461, intron 8 of 10)	intron (NM_001007461, intron 8 of 10)	9258.0	NM_001007461	450219.0	Mm.371065	NM_001007461	ENSMUSG00000064224	Gsdma3	Bsk|Dfl|Fgn|Gsdm1l|Gsdm3|Rco2|Rim3	gasdermin A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114570632-2	chr11	114570132	114571132	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97911.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77922111-2	chr10	77921611	77922611	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 24 of 33)	intron (NM_138301, intron 24 of 33)	-19575.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81144841-2	chr10	81144341	81145341	+	549.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010731, exon 2 of 3)	exon (NM_010731, exon 2 of 3)	8570.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-89944068-2	chr16	89943568	89944568	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 2 of 27)	intron (NM_009384, intron 2 of 27)	16759.0	NM_009384	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-78211834-2	chr13	78211334	78212334	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045195, intron 1 of 2)	intron (NR_045195, intron 1 of 2)	-12961.0	NM_010151	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-132211228-2	chr1	132210728	132211728	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033250, intron 1 of 3)	B3|SINE|B2	13140.0	NR_029777	723818.0		NR_029777	ENSMUSG00000065435	Mir135b	Mirn135b|mir-135b	microRNA 135b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70552262-2	chr14	70551762	70552762	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1794.0	NM_021877	15460.0	Mm.7598	NM_021877	ENSMUSG00000022096	Hr	ALUNC|AU|N|ba|bldy|hr|rh|rh-bmh|rhino	hairless	protein-coding	7.0	0.0	0.0	7.0	0.0	1.0
Merged-chr6-149324029-2	chr6	149323530	149324530	+	549.5	f0_balb.idr|f1_balb.idr	intron (NM_026054, intron 2 of 4)	intron (NM_026054, intron 2 of 4)	14616.0	NM_001289662	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38275182-2	chr2	38274682	38275682	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146122, intron 1 of 21)	intron (NM_146122, intron 1 of 21)	12202.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102902439-2	chr14	102901939	102902939	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80193.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105473417-2	chr8	105472917	105473917	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175160, intron 11 of 13)	intron (NM_175160, intron 11 of 13)	-1995.0	NM_026481	67971.0	Mm.29358	NM_026481	ENSMUSG00000014846	Tppp3	2700055K07Rik|CGI-38|Ceacam9|mmCGM8	tubulin polymerization-promoting protein family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-25568299-2	chr9	25567799	25568799	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 3 of 7)	RMER1A|Other|Other	86702.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126802129-2	chr7	126801629	126802629	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-1682.0	NM_001177308	11674.0	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23228685-2	chr16	23228185	23229185	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 1 of 7)	RMER2|LTR|ERV1	2664.0	NM_001252505	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126588037-2	chr7	126587537	126588537	+	549.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_138310, exon 3 of 4)	exon (NM_138310, exon 3 of 4)	-2220.0	NM_001146311	12752.0	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-120932660-2	chr9	120932160	120933160	+	549.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165902)	promoter-TSS (NM_001165902)	-740.0	NM_007614	12387.0	Mm.291928	NM_007614	ENSMUSG00000006932	Ctnnb1	Bfc|Catnb|Mesc	catenin (cadherin associated protein), beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29062335-2	chr17	29061835	29062835	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_036469, intron 1 of 1)	intron (NR_036469, intron 1 of 1)	16791.0	NR_036469	100504267.0	Mm.438550	NR_036469	ENSMUSG00000085912	Trp53cor1	Gm16197|linc-p21|lincRNA-p21	tumor protein p53 pathway corepressor 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-48532492-1	chr9	48531992	48532992	+	549.0	f0_balb.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	37149.0	NM_001004191	434402.0	Mm.386950	NM_001004191	ENSMUSG00000042293	Gm5617	EG434402	predicted gene 5617	protein-coding	21.0	46.5	29.5	18.0	17.0	36.5
Merged-chr16-10903978-2	chr16	10903478	10904478	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10819.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55778942-2	chr14	55778442	55779442	+	549.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001361604, exon 8 of 26)	exon (NM_001361604, exon 8 of 26)	5130.0	NM_080435	104110.0	Mm.287010	NM_080435	ENSMUSG00000022220	Adcy4	mKIAA4004	adenylate cyclase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-59759103-1	chr10	59758603	59759603	+	549.0	f1_c57bl6.idr	intron (NM_001291443, intron 6 of 12)	intron (NM_001291443, intron 6 of 12)	56540.0	NM_001291443	216001.0	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-87351934-1	chr16	87351434	87352434	+	549.0	f1_balb.idr	Intergenic	ID_B1|SINE|B4	-2251.0	NM_001159331	67768.0	Mm.296532	NM_026366	ENSMUSG00000044442	N6amt1	5830445C04Rik|Hemk2|Pred28	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124448627-1	chr6	124448127	124449127	+	549.0	f0_balb.idr	intron (NM_001346656, intron 12 of 17)	intron (NM_001346656, intron 12 of 17)	14117.0	NM_001346656	232370.0	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5621539-1	chr19	5621039	5622039	+	549.0	f1_balb.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-11445.0	NM_178637	81601.0	Mm.228930	NM_178637	ENSMUSG00000024926	Kat5	AI839539|CPLA2|Htatip|Htatip1|PLIP|Tip55|Tip60	K(lysine) acetyltransferase 5	protein-coding	5.5	9.5	3.5	7.0	12.0	1.5
Merged-chr11-34051530-2	chr11	34051048	34052048	+	549.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 2 of 20)	intron (NM_010696, intron 2 of 20)	4620.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-76505062-1	chr14	76504562	76505562	+	549.0	f0_balb.idr	intron (NM_009366, intron 1 of 2)	intron (NM_009366, intron 1 of 2)	552.0	NM_009366	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	3.5	7.0	17.0	17.5	48.0	42.0
Merged-chr15-65390092-1	chr15	65389592	65390592	+	549.0	f1_balb.idr	Intergenic	Lx|LINE|L1	-396928.0	NM_133766	76740.0	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr13-43805357-1	chr13	43804857	43805857	+	549.0	f1_balb.idr	Intergenic	Intergenic	20245.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21284941-1	chr19	21284441	21285441	+	549.0	f1_c57bl6.idr	3' UTR (NM_009551, exon 6 of 6)	3' UTR (NM_009551, exon 6 of 6)	12663.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	0.0	15.5	0.5	1.5	2.0	0.0
Merged-chr5-99233746-1	chr5	99233246	99234246	+	549.0	f1_c57bl6.idr	intron (NM_181318, intron 6 of 13)	intron (NM_181318, intron 6 of 13)	19181.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-82939738-1	chr6	82939238	82940238	+	549.0	f1_balb.idr	promoter-TSS (NM_011350)	promoter-TSS (NM_011350)	31.0	NM_001308374	20355.0	Mm.270543	NM_011350	ENSMUSG00000000627	Sema4f	Sema W	sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-39976672-1	chr8	39976172	39977172	+	549.0	f1_balb.idr	Intergenic	Intergenic	310281.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	3.0	8.0	6.0	3.0	1.5	4.0
Merged-chr8-70330377-1	chr8	70329877	70330877	+	549.0	f1_c57bl6.idr	intron (NM_138647, intron 7 of 7)	intron (NM_138647, intron 7 of 7)	612.0	NM_008107	14559.0	Mm.258280	NM_008107	ENSMUSG00000087408	Gdf1	AI385651|Gdf-1	growth differentiation factor 1	protein-coding	0.5	0.5	1.0	0.0	10.5	10.0
Merged-chr9-99436924-1	chr9	99436424	99437424	+	549.0	f1_c57bl6.idr	promoter-TSS (NM_008624)	promoter-TSS (NM_008624)	-212.0	NM_008624	17532.0	Mm.2045	NM_008624	ENSMUSG00000032470	Mras	2900078C09Rik|AI326250	muscle and microspikes RAS	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121392861-1	chr10	121392361	121393361	+	549.0	f1_c57bl6.idr	intron (NM_029364, intron 13 of 13)	intron (NM_029364, intron 13 of 13)	27771.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0.5	13.5	3.5	0.0	0.0	3.5
Merged-chr5-64853438-2	chr5	64852938	64853938	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49915.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9037933-1	chr3	9037433	9038433	+	549.0	f1_c57bl6.idr	Intergenic	Intergenic	-24031.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	23.0	21.5	9.5	3.5	4.5	5.0
Merged-chr2-109245857-2	chr2	109245357	109246357	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029790, intron 2 of 5)	Lx9|LINE|L1	32433.0	NM_029790	76894.0	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-113125849-2	chr12	113125349	113126349	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346696, intron 7 of 19)	intron (NM_001346696, intron 7 of 19)	-14387.0	NM_024223	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-61122851-1	chr14	61122351	61123351	+	549.0	f1_balb.idr	Intergenic	Intergenic	-15606.0	NM_172809	50720.0	Mm.440703	NM_015788	ENSMUSG00000048279	Sacs	A230052M14|DNAJC29|E130115J16Rik	sacsin	protein-coding	0.0	2.0	1.0	12.5	3.0	1.0
Merged-chr12-62185395-1	chr12	62184895	62185895	+	549.0	f1_balb.idr	Intergenic	Lx3B|LINE|L1	-502392.0	NR_131949	73309.0	Mm.276558	NR_131949		Spanxn4	1700047L15Rik	SPANX family, member N4	ncRNA	2.0	3.0	0.0	0.0	0.0	0.0
Merged-chr13-10344588-1	chr13	10344088	10345088	+	549.0	f0_balb.idr	intron (NM_033269, intron 1 of 4)	intron (NM_033269, intron 1 of 4)	16215.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-55191902-1	chr15	55191402	55192402	+	549.0	f0_balb.idr	intron (NM_001037937, intron 4 of 8)	L1PB4|LINE|L1	58466.0	NM_001037937	97998.0	Mm.295397	NM_145470	ENSMUSG00000022419	Deptor	Depdc6	DEP domain containing MTOR-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56250275-2	chr17	56249775	56250775	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6518.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-46735728-1	chr14	46735228	46736228	+	549.0	f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-24813.0	NM_001360041	72391.0	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding	5.0	25.5	8.5	5.0	9.5	8.0
Merged-chr17-35515797-2	chr17	35515297	35516297	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025674, intron 2 of 3)	intron (NM_025674, intron 2 of 3)	1027.0	NM_001163764	106795.0	Mm.11434	NM_025674	ENSMUSG00000050410	Tcf19	5730403J10Rik|AW495861	transcription factor 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20646894-2	chr18	20646394	20647394	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155534, intron 1 of 2)	MTEa|LTR|ERVL-MaLR	-18356.0	NM_013697	22139.0	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12587457-1	chr19	12586957	12587957	+	549.0	f1_balb.idr	exon (NM_001346545, exon 3 of 3)	exon (NM_001346545, exon 3 of 3)	9109.0	NR_015503	74333.0	Mm.329744	NR_015503	ENSMUSG00000086213	A330040F15Rik	-	RIKEN cDNA A330040F15 gene	ncRNA	13.0	28.0	9.0	4.5	23.5	22.5
Merged-chr19-6254413-2	chr19	6253913	6254913	+	549.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_194348, exon 24 of 40)	exon (NM_194348, exon 24 of 40)	-10230.0	NR_029830	723957.0		NR_029830	ENSMUSG00000065582	Mir194-2	Mirn194-2|mir-194-2	microRNA 194-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35983871-2	chr9	35983371	35984371	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A1-int|LTR|ERVL-MaLR	-133991.0	NR_030730	100041605.0	Mm.99350	NR_030730	ENSMUSG00000098705	Gm3428	-	predicted gene 3428	ncRNA	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr1-173626917-1	chr1	173626417	173627417	+	549.0	f1_balb.idr	Intergenic	Intergenic	-3942.0	NM_175026	236312.0	Mm.447	NM_175026	ENSMUSG00000043263	Ifi209	4930422C14|AI447904|Ifix|Pyhin-1|Pyhin1	interferon activated gene 209	protein-coding	6.5	5.0	0.5	7.5	1.5	0.5
Merged-chr17-35930722-1	chr17	35930222	35931222	+	549.0	f1_balb.idr	exon (NM_001163818, exon 18 of 19)	exon (NM_001163818, exon 18 of 19)	11450.0	NM_001357740	52040.0	Mm.29385	NM_175934	ENSMUSG00000039220	Ppp1r10	2610025H06Rik|Cat53|D17Ertd808e|Fb19|Pnuts	protein phosphatase 1, regulatory subunit 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95082565-2	chr8	95082065	95083065	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028805, intron 1 of 19)	intron (NM_028805, intron 1 of 19)	1364.0	NM_028805	74187.0	Mm.28382	NM_028805	ENSMUSG00000031787	Katnb1	2410003J24Rik|KAT	katanin p80 (WD40-containing) subunit B 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69394357-1	chr11	69393857	69394857	+	549.0	f1_balb.idr	intron (NM_001045525, intron 3 of 3)	intron (NM_001045525, intron 3 of 3)	989.0	NM_001045525	327951.0	Mm.415669	NM_001045525	ENSMUSG00000044795	Cyb5d1	Gm740	cytochrome b5 domain containing 1	protein-coding	0.5	2.5	6.5	0.5	3.5	5.0
Merged-chr11-76484307-1	chr11	76483807	76484807	+	549.0	f1_balb.idr	intron (NM_001346670, intron 2 of 21)	intron (NM_001346670, intron 2 of 21)	10188.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-28304032-1	chr10	28303532	28304532	+	549.0	f0_balb.idr	intron (NM_001359356, intron 3 of 30)	intron (NM_001359356, intron 3 of 30)	229212.0	NM_001359356	19272.0	Mm.332303	NM_008983	ENSMUSG00000019889	Ptprk	AI853699|PTPk|RPTPkappa	protein tyrosine phosphatase, receptor type, K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-37765194-1	chr2	37764694	37765694	+	549.0	f1_balb.idr	Intergenic	Intergenic	-11055.0	NM_001163566	241324.0	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102605101-2	chr7	102604637	102605637	+	549.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_147102, exon 1 of 1)	exon (NM_147102, exon 1 of 1)	781.0	NM_147102	259106.0	Mm.377848	NM_147102	ENSMUSG00000073973	Olfr552	MOR28-1	olfactory receptor 552	protein-coding	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr4-72329132-2	chr4	72328632	72329632	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	127888.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102708529-1	chr12	102708029	102709029	+	549.0	f1_c57bl6.idr	Intergenic	Intergenic	-3660.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-10535302-1	chr6	10534802	10535802	+	549.0	f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	439076.0	NR_033776	57866.0	Mm.4397	NR_033776		AA545190	-	EST AA545190	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-18840742-2	chr2	18840242	18841242	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-38924.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-25061090-1	chr16	25060590	25061590	+	549.0	f1_c57bl6.idr	intron (NR_040374, intron 1 of 2)	B1_Mus1|SINE|Alu	1451.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97300930-1	chr6	97300430	97301430	+	549.0	f1_balb.idr	intron (NM_145148, intron 19 of 23)	intron (NM_145148, intron 19 of 23)	-48150.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	17.5	16.5	11.0	13.5	15.5	3.5
Merged-chr11-59634400-2	chr11	59633900	59634900	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21434.0	NM_001011740	257886.0	Mm.457883	NM_001011740	ENSMUSG00000044061	Olfr225	MOR256-51	olfactory receptor 225	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60683423-2	chr18	60682933	60683933	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20023.0	NR_045401	328963.0	Mm.417203	NR_045401		G630071F17Rik	G630071F17	RIKEN cDNA G630071F17 gene	ncRNA	0.0	1.5	1.0	0.0	5.0	3.0
Merged-chr1-122982893-1	chr1	122982393	122983393	+	549.0	f1_balb.idr	Intergenic	L1Md_F|LINE|L1	777748.0	NR_151524	102638832.0	Mm.112794	NR_151524	ENSMUSG00000099960	Gm28590	-	predicted gene 28590	ncRNA	0.0	0.5	0.0	3.0	4.0	1.0
Merged-chr4-151932133-2	chr4	151931633	151932633	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1587.0	NM_172704	230935.0	Mm.21353	NM_172704	ENSMUSG00000039768	Dnajc11	E030019A03Rik	DnaJ heat shock protein family (Hsp40) member C11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9174746-2	chr13	9174246	9175246	+	549.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001311117)	TTS (NM_001311117)	80865.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-87669892-1	chr4	87669392	87670392	+	549.0	f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	136431.0	NM_001286158	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-45817150-1	chr8	45816650	45817650	+	549.0	f1_c57bl6.idr	intron (NM_001205219, intron 21 of 23)	intron (NM_001205219, intron 21 of 23)	2147.0	NR_045739	319940.0	Mm.441720	NR_045739	ENSMUSG00000085440	Sorbs2os	D330022K07Rik	sorbin and SH3 domain containing 2, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135366547-1	chr5	135366047	135367047	+	549.0	f1_balb.idr	exon (NM_001346745, exon 5 of 6)	exon (NM_001346745, exon 5 of 6)	-3406.0	NM_001359617	100609.0	Mm.281189	NM_145414	ENSMUSG00000000916	Nsun5	9830109N13Rik|AI326939|Nol1r|Wbscr20|Wbscr20a	NOL1/NOP2/Sun domain family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-104460143-2	chr5	104459643	104460643	+	549.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008861, exon 1 of 15)	exon (NM_008861, exon 1 of 15)	686.0	NM_008861	18764.0	Mm.6442	NM_008861	ENSMUSG00000034462	Pkd2	C030034P18Rik|PC2|TRPP2	polycystic kidney disease 2	protein-coding	0.0	2.5	1.5	0.0	0.0	0.0
Merged-chr18-44825598-1	chr18	44825098	44826098	+	549.0	f1_balb.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-3067.0	NM_001163013	240255.0	Mm.244482	NM_001163013	ENSMUSG00000034653	Ythdc2	3010002F02Rik|BC037178	YTH domain containing 2	protein-coding	32.0	25.5	22.0	14.0	13.5	18.0
Merged-chr13-96107808-1	chr13	96107308	96108308	+	549.0	f0_c57.idr	intron (NM_029210, intron 1 of 12)	intron (NM_029210, intron 1 of 12)	24769.0	NM_029210	75209.0	Mm.40436	NM_029210	ENSMUSG00000051111	Sv2c	4930527L09Rik|AI841971	synaptic vesicle glycoprotein 2c	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-128824400-1	chr1	128823900	128824900	+	549.0	f0_balb.idr	Intergenic	Intergenic	-232101.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-64967378-1	chr12	64966878	64967878	+	549.0	f0_balb.idr	exon (NM_177805, exon 1 of 20)	exon (NM_177805, exon 1 of 20)	1636.0	NM_177805	328108.0	Mm.138465	NM_177805	ENSMUSG00000035614	Togaram1	A430041B07Rik|BC062107|C130034K06|Fam179b|mKIAA0423	TOG array regulator of axonemal microtubules 1	protein-coding	0.0	1.0	1.0	0.0	1.0	2.5
Merged-chr13-60618308-1	chr13	60617808	60618808	+	549.0	f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	16097.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-63962959-2	chr3	63962459	63963459	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001272035, intron 1 of 6)	B1F1|SINE|Alu	1774.0	NM_001272035	11416.0	Mm.135619	NM_015728	ENSMUSG00000027822	Slc33a1	AI315656|AI788741|Acatn|D630022N01Rik	solute carrier family 33 (acetyl-CoA transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136161589-1	chr4	136161089	136162089	+	549.0	f1_balb.idr	Intergenic	Intergenic	-10685.0	NM_177733	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32505681-2	chr2	32505181	32506181	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-29678.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17674434-1	chr6	17673934	17674934	+	549.0	f1_balb.idr	Intergenic	Lx9|LINE|L1	-19560.0	NM_001289626	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.0	1.5	0.0	0.0	1.5	0.0
Merged-chr6-148608082-1	chr6	148607582	148608582	+	549.0	f1_balb.idr	non-coding (NR_045867, exon 3 of 3)	non-coding (NR_045867, exon 3 of 3)	6227.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-73361305-1	chr8	73360805	73361805	+	549.0	f1_balb.idr	Intergenic	Intergenic	-7765.0	NM_010687	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26540546-2	chr17	26540046	26541046	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB1|LINE|L1	-20966.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	3.5	1.0	0.0	10.5	1.0	8.5
Merged-chr4-140991350-2	chr4	140990850	140991850	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164366, intron 1 of 28)	intron (NM_001164366, intron 1 of 28)	4477.0	NM_001164366	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-20949556-1	chr5	20949056	20950056	+	549.0	f1_c57bl6.idr	intron (NM_001080977, intron 1 of 7)	intron (NM_001080977, intron 1 of 7)	-1433.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167588030-1	chr2	167587530	167588530	+	549.0	f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	43975.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43535486-1	chr4	43534986	43535986	+	549.0	f1_balb.idr	intron (NM_011602, intron 48 of 56)	intron (NM_011602, intron 48 of 56)	-11932.0	NM_001277875	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127972570-2	chr7	127972070	127973070	+	549.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347649, exon 6 of 15)	exon (NM_001347649, exon 6 of 15)	5091.0	NM_139149	233908.0	Mm.277680	NM_139149	ENSMUSG00000030795	Fus	D430004D17Rik|D930039C12Rik|Fus1|Tls	fused in sarcoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-179648693-1	chr2	179648193	179649193	+	549.0	f0_balb.idr	intron (NM_001316723, intron 2 of 5)	intron (NM_001316723, intron 2 of 5)	206262.0	NM_009867	12561.0	Mm.184711	NM_009867	ENSMUSG00000000305	Cdh4	AW120700|R-CAD|R-Cadh|Rcad	cadherin 4	protein-coding	6.0	1.0	0.5	5.5	2.5	2.5
Merged-chr13-28860408-1	chr13	28859908	28860908	+	549.0	f0_balb.idr	intron (NR_045054, intron 2 of 7)	intron (NR_045054, intron 2 of 7)	25014.0	NR_045054	72518.0	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-8994915-1	chr3	8994415	8995415	+	549.0	f1_balb.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	9289.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	3.5	4.0	0.5	2.0	0.0	1.0
Merged-chr1-145345704-2	chr1	145345204	145346204	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-570277.0	NM_022881	64214.0	Mm.253927	NM_022881	ENSMUSG00000026357	Rgs18	-	regulator of G-protein signaling 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-144789106-2	chr5	144788606	144789606	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081362, intron 13 of 70)	MTD|LTR|ERVL-MaLR	20314.0	NM_001081362	100683.0	Mm.273570	NM_001081362	ENSMUSG00000045482	Trrap	AI481500	transformation/transcription domain-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-67729652-1	chr13	67729152	67730152	+	549.0	f1_c57bl6.idr	promoter-TSS (NM_145622)	promoter-TSS (NM_145622)	390.0	NR_027969	68271.0	Mm.145530	NM_026649		Zfp85os	4930441O14Rik	zinc finger protein 85, opposite strand	ncRNA	2.0	0.0	7.0	5.5	0.0	0.0
Merged-chr6-122821406-1	chr6	122820906	122821906	+	549.0	f1_balb.idr	intron (NM_021899, intron 1 of 10)	intron (NM_021899, intron 1 of 10)	1222.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126440422-2	chr4	126439922	126440922	+	549.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001317173, exon 17 of 19)	exon (NM_001317173, exon 17 of 19)	-10880.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-125372195-2	chr10	125371695	125372695	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43232.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55110652-2	chr14	55110152	55111152	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177049, intron 3 of 5)	intron (NM_177049, intron 3 of 5)	-4059.0	NM_007455	11766.0	Mm.238879	NM_007455	ENSMUSG00000040701	Ap1g2	Adtg2|G2ad	adaptor protein complex AP-1, gamma 2 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181184480-1	chr2	181183980	181184980	+	549.0	f1_c57bl6.idr	Intergenic	Intergenic	-2342.0	NR_151465	66496.0	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-66442925-1	chr18	66442425	66443425	+	549.0	f1_c57bl6.idr	Intergenic	Intergenic	-15679.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0.0	0.0	4.0	0.0	0.0	4.0
Merged-chr7-100208565-2	chr7	100208065	100209065	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	-19042.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-109694883-2	chr8	109694383	109695383	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1589.0	NM_001361562	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135414097-2	chr3	135413597	135414597	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025902, intron 1 of 2)	intron (NM_025902, intron 1 of 2)	9336.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-117086712-1	chr2	117086212	117087212	+	549.0	f1_c57bl6.idr	Intergenic	Intergenic	-34359.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-134934159-1	chr4	134933659	134934659	+	549.0	f1_c57bl6.idr	intron (NM_026780, intron 2 of 6)	intron (NM_026780, intron 2 of 6)	3179.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-93819010-1	chr11	93818510	93819510	+	549.0	f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	66756.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	6.0	0.5	0.5	1.5	4.5	1.5
Merged-chr16-36929601-1	chr16	36929101	36930101	+	549.0	f1_balb.idr	intron (NM_030035, intron 20 of 21)	intron (NM_030035, intron 20 of 21)	-5382.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34246225-1	chr19	34245725	34246725	+	549.0	f1_balb.idr	exon (NM_007392, exon 6 of 9)	exon (NM_007392, exon 6 of 9)	9148.0	NM_007392	11475.0	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMAalpha|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	3.5	0.0	0.0	6.0	3.0	0.5
Merged-chr10-104949173-1	chr10	104948673	104949673	+	549.0	f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	625306.0	NM_177368	278279.0	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	0.0	0.0	0.0	0.5	0.0	2.5
Merged-chr13-29985659-1	chr13	29985159	29986159	+	549.0	f0_balb.idr	exon (NM_010093, exon 1 of 7)	exon (NM_010093, exon 1 of 7)	404.0	NM_010093	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-48464556-1	chr17	48464056	48465056	+	549.0	f1_c57bl6.idr	intron (NM_152823, intron 7 of 8)	intron (NM_152823, intron 7 of 8)	9655.0	NM_152823	76589.0	Mm.311629	NM_152823	ENSMUSG00000043592	Unc5cl	2510009H09Rik|BB155270|Zud	unc-5 family C-terminal like	protein-coding	0.5	2.0	0.0	0.5	3.5	0.0
Merged-chr4-122855962-1	chr4	122855462	122856462	+	549.0	f1_c57bl6.idr	intron (NM_008917, intron 8 of 8)	intron (NM_008917, intron 8 of 8)	19735.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	1.0	6.0	1.0	0.0	7.0	1.0
Merged-chr7-97387884-1	chr7	97387384	97388384	+	549.0	f1_c57bl6.idr	intron (NM_199035, intron 9 of 12)	B4A|SINE|B4	-12119.0	NM_024220	68197.0	Mm.334031	NM_024220	ENSMUSG00000030647	Ndufc2	1810004I06Rik|2010300P09Rik|G1|R75094	NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2	protein-coding	2.5	1.5	0.0	1.0	3.0	0.0
Merged-chr14-115534955-2	chr14	115534455	115535455	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175500, intron 5 of 7)	Lx6|LINE|L1	-125403.0	NR_045761	75088.0	Mm.444706	NR_045761	ENSMUSG00000093551	4930505G20Rik	-	RIKEN cDNA 4930505G20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-12932420-2	chr9	12931920	12932920	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	173435.0	NR_040755	78219.0	Mm.414868	NR_040755	ENSMUSG00000111830	4930568E12Rik	-	RIKEN cDNA 4930568E12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-30857225-1	chr3	30856725	30857725	+	549.0	f1_c57bl6.idr	intron (NM_001286994, intron 1 of 3)	intron (NM_001286994, intron 1 of 3)	1275.0	NM_001286994	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-144974651-1	chr4	144974151	144975151	+	549.0	f0_balb.idr	3' UTR (NM_001276502, exon 69 of 69)	3' UTR (NM_001276502, exon 69 of 69)	81514.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-23317940-2	chr16	23317440	23318440	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 3 of 7)	intron (NM_001252505, intron 3 of 7)	27470.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-15223527-1	chr18	15223027	15224027	+	549.0	f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-72081.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-78489781-2	chr1	78489281	78490281	+	549.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102757)	promoter-TSS (NR_102757)	-884.0	NM_011811	23874.0	Mm.17898	NM_011811	ENSMUSG00000026245	Farsb	C76708|Farsa|Farsl|Farslb|Frsb	phenylalanyl-tRNA synthetase, beta subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-29420769-1	chr6	29420269	29421269	+	549.0	f1_balb.idr	intron (NM_001347071, intron 17 of 17)	intron (NM_001347071, intron 17 of 17)	-12384.0	NM_001081185	68794.0	Mm.39046	NM_026839	ENSMUSG00000068699	Flnc	1110055E19Rik|ABP-280|ABPL|Fln2	filamin C, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122645709-1	chr14	122645209	122646209	+	549.0	f0_balb.idr	intron (NR_153443, intron 8 of 24)	intron (NR_153443, intron 8 of 24)	111381.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-98957850-1	chr12	98957350	98958350	+	549.0	f1_c57bl6.idr	intron (NM_198311, intron 8 of 14)	intron (NM_198311, intron 8 of 14)	37238.0	NM_198311	76260.0	Mm.282660	NM_029553	ENSMUSG00000021013	Ttc8	0610012F22Rik|AV001447|BBS8	tetratricopeptide repeat domain 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84796778-1	chr2	84796278	84797278	+	549.0	f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2050.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	0.0	0.0	0.0	3.5	0.0	0.0
Merged-chr15-50841108-1	chr15	50840608	50841608	+	549.0	f1_c57bl6.idr	intron (NM_001310481, intron 2 of 5)	intron (NM_001310481, intron 2 of 5)	47941.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0.0	11.0	2.5	0.0	11.0	2.5
Merged-chr11-100754226-2	chr11	100753726	100754726	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081194, intron 6 of 16)	intron (NM_001081194, intron 6 of 16)	5552.0	NM_001081194	380728.0	Mm.297539	NM_001081194	ENSMUSG00000035355	Kcnh4	BEC2	potassium voltage-gated channel, subfamily H (eag-related), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-16271280-2	chr19	16270780	16271780	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 2 of 6)	intron (NM_008139, intron 2 of 6)	43724.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-118360963-1	chr4	118360463	118361463	+	549.0	f0_balb.idr	intron (NM_026601, intron 3 of 8)	intron (NM_026601, intron 3 of 8)	964.0	NR_003946	68180.0	Mm.193212	NM_026601	ENSMUSG00000006395	Hyi	2700033B16Rik|6430559E15Rik|HT036	hydroxypyruvate isomerase (putative)	protein-coding	13.5	33.0	13.0	60.0	139.5	108.5
Merged-chr14-9638212-1	chr14	9637712	9638712	+	549.0	f0_balb.idr	intron (NM_001360141, intron 8 of 9)	MIR3|SINE|MIR	-245883.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-4266443-2	chr10	4265943	4266943	+	549.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_031185, exon 1 of 4)	5' UTR (NM_031185, exon 1 of 4)	114.0	NM_031185	83397.0	Mm.27481	NM_031185	ENSMUSG00000038587	Akap12	AI317366|SSeCKS|Srcs5|Tsga12	A kinase (PRKA) anchor protein (gravin) 12	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr19-5089192-2	chr19	5088692	5089692	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026553, intron 1 of 7)	intron (NM_026553, intron 1 of 7)	654.0	NM_026553	68090.0	Mm.44202	NM_026553	ENSMUSG00000024875	Yif1a	5330422J23Rik|54TM|Yif1|Yif1p	Yip1 interacting factor homolog A (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-148399162-1	chr6	148398662	148399662	+	549.0	f1_balb.idr	intron (NM_198967, intron 5 of 19)	intron (NM_198967, intron 5 of 19)	44506.0	NR_003634	66184.0	Mm.391542	NM_025405	ENSMUSG00000063171	Rps4l	1110033J19Rik|AA407494|Rps4y2	ribosomal protein S4-like	pseudo	1.5	7.5	4.5	1.5	3.5	4.5
Merged-chr14-65107078-2	chr14	65106578	65107578	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-8972.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-139208815-1	chr7	139208315	139209315	+	549.0	f1_c57bl6.idr	intron (NM_001162540, intron 1 of 11)	MLT1B|LTR|ERVL-MaLR	-4173.0	NM_027164	76612.0	Mm.17757	NM_027164	ENSMUSG00000015980	Lrrc27	1700071K18Rik|2310044E02Rik	leucine rich repeat containing 27	protein-coding	17.5	7.5	5.5	4.0	1.0	5.5
Merged-chr6-7258918-2	chr6	7258418	7259418	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-296143.0	NM_009311	21333.0	Mm.1440	NM_009311	ENSMUSG00000061762	Tac1	4930528L02Rik|NK-1|NK1|Nkna|PPT-A|PPTA|SP	tachykinin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127573895-1	chr10	127573395	127574395	+	549.0	f1_c57bl6.idr	intron (NM_008512, intron 28 of 88)	intron (NM_008512, intron 28 of 88)	-39336.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.0	12.0	8.0	0.0	0.0	0.0
Merged-chr12-74009651-1	chr12	74009151	74010151	+	549.0	f0_balb.idr	intron (NM_172804, intron 1 of 6)	intron (NM_172804, intron 1 of 6)	11890.0	NM_172804	238266.0	Mm.311393	NM_172804	ENSMUSG00000044912	Syt16	6430703N11|Strep14|Syt14l|syt14r	synaptotagmin XVI	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-80413968-1	chr1	80413468	80414468	+	549.0	f0_balb.idr	Intergenic	Intergenic	-31964.0	NR_040460	72208.0	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan	RIKEN cDNA 1700016L21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111662873-2	chr10	111662373	111663373	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68600.0	NR_045344	71321.0	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-17681519-1	chr12	17681019	17682019	+	549.0	f1_balb.idr	Intergenic	Intergenic	-9290.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	16.0	24.5	15.0	2.5	11.0	19.0
Merged-chr16-44770000-2	chr16	44769500	44770500	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	4264.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-6439993-1	chr18	6439493	6440493	+	549.0	f1_balb.idr	intron (NM_007935, intron 12 of 13)	intron (NM_007935, intron 12 of 13)	50653.0	NR_035446	100316773.0		NR_035446	ENSMUSG00000084514	Mir1893	Mirn1893|mmu-mir-1893	microRNA 1893	ncRNA	4.0	0.0	11.5	0.0	0.0	0.0
Merged-chr2-72657692-1	chr2	72657192	72658192	+	549.0	f1_c57bl6.idr	Intergenic	Intergenic	-45818.0	NR_040503	74541.0	Mm.410774	NR_040503	ENSMUSG00000085252	8430437L04Rik	-	RIKEN cDNA 8430437L04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101552954-1	chr7	101552454	101553454	+	549.0	f1_balb.idr	intron (NM_007490, intron 2 of 2)	intron (NM_007490, intron 2 of 2)	2848.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	29.0	82.0	76.5	29.5	85.0	39.0
Merged-chr11-94717673-2	chr11	94717173	94718173	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger1|DNA|TcMar-Tigger	-13174.0	NM_001007584	432589.0	Mm.342314	NM_001007584	ENSMUSG00000056008	Gm11541	-	predicted gene 11541	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38966248-2	chr6	38965748	38966748	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	intron (NM_011539, intron 3 of 12)	47262.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-5422144-2	chr5	5421644	5422644	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-41893.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142393838-1	chr3	142393338	142394338	+	549.0	f0_balb.idr	intron (NM_001190854, intron 1 of 12)	intron (NM_001190854, intron 1 of 12)	1858.0	NM_001190853	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-116441815-1	chr12	116441315	116442315	+	549.0	f1_c57bl6.idr	intron (NM_133762, intron 23 of 28)	ORR1D1|LTR|ERVL-MaLR	36413.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	14.0	42.5	28.0	11.0	5.0	6.0
Merged-chr6-124825171-1	chr6	124824671	124825671	+	549.0	f1_balb.idr	exon (NM_001326594, exon 3 of 20)	exon (NM_001326594, exon 3 of 20)	4313.0	NM_001326594	22225.0	Mm.3571	NM_013700	ENSMUSG00000038429	Usp5	AA407472|ISOT|ISOT-1|Ucht	ubiquitin specific peptidase 5 (isopeptidase T)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-95798452-1	chr15	95797952	95798952	+	549.0	f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	ORR1B2|LTR|ERVL-MaLR	7609.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-69234332-1	chr17	69233832	69234832	+	549.0	f0_balb.idr	intron (NM_001355736, intron 3 of 21)	ORR1E|LTR|ERVL-MaLR	42874.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101321075-1	chr7	101320575	101321575	+	549.0	f0_balb.idr	promoter-TSS (NM_019990)	promoter-TSS (NM_019990)	-38.0	NM_019990	56018.0	Mm.28896	NM_019990	ENSMUSG00000030688	Stard10	AV048538|CGI-52|NY-C0-28|PC-TP2|PCTP2|Pctpl|Sdccag28|SdccagG28|TISP-81	START domain containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163669254-1	chr2	163668754	163669754	+	549.0	f1_c57bl6.idr	intron (NM_001039390, intron 2 of 4)	L1_Mus2|LINE|L1	10796.0	NM_001164053	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131105948-1	chr1	131105448	131106448	+	549.0	f1_c57bl6.idr	Intergenic	Intergenic	-8105.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	2.5	10.5	0.0	6.0	1.0	2.5
Merged-chr2-29856644-2	chr2	29856144	29857144	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10917.0	NR_029838	723904.0		NR_029838	ENSMUSG00000065485	Mir219a-2	Mir219-2|Mirn219-2|mir-219a-2|mmu-mir-219a-2	microRNA 219a-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-28526199-2	chr2	28525699	28526699	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009058, intron 1 of 17)	intron (NM_009058, intron 1 of 17)	-7265.0	NM_001145835	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-19343085-1	chr2	19342585	19343585	+	549.0	f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1232.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-80267000-1	chr13	80266500	80267500	+	549.0	f1_c57bl6.idr	Intergenic	Intergenic	-616384.0	NR_153410	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-77803972-2	chr15	77803472	77804472	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 3 of 40)	intron (NM_022410, intron 3 of 40)	38203.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-67252328-1	chr17	67251828	67252828	+	549.0	f1_balb.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	102131.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.0	3.5	2.0	2.0	4.0	0.5
Merged-chr7-46179897-2	chr7	46179397	46180397	+	549.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357538, exon 1 of 39)	exon (NM_001357538, exon 1 of 39)	136.0	NM_001357538	20927.0	Mm.259076	NM_011510	ENSMUSG00000040136	Abcc8	D930031B21Rik|SUR1|Sur	ATP-binding cassette, sub-family C (CFTR/MRP), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	3.5
Merged-chr2-52845545-1	chr2	52845045	52846045	+	549.0	f0_balb.idr	Intergenic	Intergenic	-12323.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167485285-2	chr2	167484785	167485785	+	549.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_170756, exon 2 of 3)	exon (NM_170756, exon 2 of 3)	-7360.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44657803-1	chr13	44657303	44658303	+	549.0	f0_c57.idr	Intergenic	Intergenic	-72971.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-32276073-1	chr16	32275573	32276573	+	549.0	f0_balb.idr	Intergenic	Intergenic	-1388.0	NM_027355	70238.0	Mm.228263	NM_027355	ENSMUSG00000014074	Rnf168	3110001H15Rik	ring finger protein 168	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-49090312-1	chr11	49089812	49090812	+	549.0	f1_balb.idr	intron (NM_008330, intron 1 of 1)	intron (NM_008330, intron 1 of 1)	3295.0	NM_008330	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75566228-2	chr15	75565728	75566728	+	549.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011837, exon 2 of 4)	exon (NM_011837, exon 2 of 4)	420.0	NM_001135689	23934.0	Mm.22154	NM_011837	ENSMUSG00000022577	Ly6h	-	lymphocyte antigen 6 complex, locus H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155811774-1	chr1	155811274	155812274	+	549.0	f1_c57bl6.idr	intron (NM_001024945, intron 1 of 11)	intron (NM_001024945, intron 1 of 11)	1125.0	NM_023268	104009.0	Mm.27035	NM_023268	ENSMUSG00000033684	Qsox1	1300003H02Rik|QSOX|Qscn6|SOx|b2b2673Clo	quiescin Q6 sulfhydryl oxidase 1	protein-coding	6.5	7.0	0.5	1.5	0.0	4.0
Merged-chr4-57026019-1	chr4	57025519	57026519	+	549.0	f0_balb.idr	intron (NM_001355492, intron 19 of 24)	intron (NM_001355492, intron 19 of 24)	-35628.0	NM_001142965	230235.0	Mm.207654	NM_001142965	ENSMUSG00000045589	Frrs1l	6430704M03Rik	ferric-chelate reductase 1 like	protein-coding	5.0	5.5	5.0	1.5	1.0	6.5
Merged-chr19-11611676-1	chr19	11611176	11612176	+	549.0	f0_c57.idr	Intergenic	Intergenic	-6872.0	NM_026835	68774.0	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	8.0	3.5	3.5	6.0	0.0	8.0
Merged-chr1-143922591-1	chr1	143922091	143923091	+	549.0	f0_balb.idr	Intergenic	Intergenic	81558.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25596318-2	chr8	25595818	25596818	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173012, intron 2 of 10)	intron (NM_173012, intron 2 of 10)	1169.0	NM_173012	270035.0	Mm.268349	NM_173012	ENSMUSG00000037363	Letm2	6030453H13|D030041N04Rik	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-114895620-1	chr6	114895120	114896120	+	549.0	f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	B3A|SINE|B2	26201.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-156719857-1	chr1	156719357	156720357	+	549.0	f1_balb.idr	promoter-TSS (NM_145413)	promoter-TSS (NM_145413)	-947.0	NM_145413	215015.0	Mm.229107	NM_145413	ENSMUSG00000033557	Fam20b	C530043G21Rik|mKIAA0475	family with sequence similarity 20, member B	protein-coding	5.0	0.0	0.0	0.0	0.0	3.0
Merged-chr13-47173382-1	chr13	47172882	47173882	+	549.0	f0_balb.idr	intron (NM_146042, intron 1 of 7)	L1MC3|LINE|L1	-20621.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101328895-2	chr15	101328395	101329395	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35683.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	0.0	1.5	0.0	0.0	1.5	0.0
Merged-chr6-87085242-1	chr6	87084742	87085742	+	549.0	f0_balb.idr	intron (NM_013528, intron 15 of 18)	intron (NM_013528, intron 15 of 18)	-19504.0	NM_001167938	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr12-58267852-1	chr12	58267352	58268352	+	549.0	f1_c57bl6.idr	exon (NM_025809, exon 1 of 1)	exon (NM_025809, exon 1 of 1)	1406.0	NM_025809	66864.0	Mm.280563	NM_025809	ENSMUSG00000045930	Clec14a	1200003C23Rik|AI642649	C-type lectin domain family 14, member a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-16051900-2	chr17	16051400	16052400	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-225314.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9825673-1	chr4	9825173	9826173	+	549.0	f1_c57bl6.idr	Intergenic	Intergenic	-18699.0	NM_013526	242316.0	Mm.302555	NM_013526	ENSMUSG00000051279	Gdf6	BMP-13|BMP13|GDF16	growth differentiation factor 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113620891-1	chr13	113620391	113621391	+	549.0	f1_balb.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	-2327.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-60929461-2	chr10	60928961	60929961	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033616, intron 1 of 2)	intron (NR_033616, intron 1 of 2)	6438.0	NR_105835	102466158.0		NR_105835	ENSMUSG00000099279	Mir6408	Gm27451|mmu-mir-6408	microRNA 6408	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84242274-1	chr8	84241774	84242774	+	549.0	f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5232.0	NM_172503	212168.0	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	1.0	4.5	1.5	0.0	0.0	0.0
Merged-chr11-115065455-1	chr11	115064955	115065955	+	549.0	f1_c57bl6.idr	Intergenic	Intergenic	-3416.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	8.0	22.5	15.5	8.0	18.5	9.0
Merged-chr5-79654435-2	chr5	79653935	79654935	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-1366136.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.0	0.0	0.0	0.0	5.0	1.5
Merged-chr10-80610232-2	chr10	80609732	80610732	+	549.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105877)	TTS (NR_105877)	972.0	NR_105877	102465550.0		NR_105877	ENSMUSG00000099283	Mir6912	Gm27990|mmu-mir-6912	microRNA 6912	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124725286-2	chr6	124724786	124725786	+	548.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_013545, exon 10 of 16)	exon (NM_013545, exon 10 of 16)	-6896.0	NR_029792	723944.0		NR_029792	ENSMUSG00000065462	Mir200c	Mirn200c|mir-200c	microRNA 200c	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85727120-2	chr12	85726620	85727620	+	548.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19419.0	NM_145447	217721.0	Mm.301076	NM_145447	ENSMUSG00000034258	Flvcr2	CCT|Mfsd7c	feline leukemia virus subgroup C cellular receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-4602536-2	chr2	4602059	4603059	+	548.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 9 of 11)	intron (NM_001177844, intron 9 of 11)	42805.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80337988-2	chr12	80337488	80338488	+	548.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177267, exon 9 of 9)	3' UTR (NM_177267, exon 9 of 9)	53689.0	NR_037207	100526530.0		NR_037207	ENSMUSG00000105972	Mir1843a	Mir1843|mir-1843a|mmu-mir-1843|mmu-mir-1843a	microRNA 1843a	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-17790730-2	chr15	17790230	17791230	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR27|LTR|ERVK	578897.0	NR_045711	70886.0	Mm.399021	NR_045711	ENSMUSG00000098150	4921515E04Rik	-	RIKEN cDNA 4921515E04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96268075-2	chr3	96267575	96268575	+	548.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178215)	promoter-TSS (NM_178215)	-579.0	NM_178215	319154.0	Mm.383293	NM_178215	ENSMUSG00000074403	Hist2h3b	H3-615|H3-616	histone cluster 2, H3b	protein-coding	14.5	20.0	6.5	10.0	12.0	14.0
Merged-chr5-21199370-2	chr5	21198870	21199870	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 3 of 26)	L1VL4|LINE|L1	13103.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154614297-2	chr2	154613797	154614797	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199304, intron 1 of 14)	intron (NM_199304, intron 1 of 14)	929.0	NM_199304	228807.0	Mm.103555	NM_199304	ENSMUSG00000059842	Zfp341	Znf341	zinc finger protein 341	protein-coding	3.0	26.5	20.0	18.0	11.0	13.5
Merged-chr5-148472722-2	chr5	148472222	148473222	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-72818.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92089360-2	chr16	92088860	92089860	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080456, intron 1 of 2)	intron (NM_080456, intron 1 of 2)	31024.0	NM_080456	121022.0	Mm.217354	NM_080456	ENSMUSG00000039680	Mrps6	AW046321	mitochondrial ribosomal protein S6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19499510-2	chr7	19499010	19500010	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	8821.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91019718-2	chr16	91019218	91020218	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152264, intron 15 of 17)	intron (NR_152264, intron 15 of 17)	-8410.0	NM_001164483	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-148616198-2	chr6	148615698	148616698	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1889.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-52167838-2	chr11	52167338	52168338	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9931.0	NR_034155	257871.0	Mm.253576	NR_034155		Olfr1372-ps1	GA_x5J8B7TR6JS-3-632|MOR256-54P|NP_TR6JSE50FPA	olfactory receptor 1372, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-13848538-2	chr16	13848038	13849038	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039533, intron 13 of 22)	intron (NM_001039533, intron 13 of 22)	29287.0	NM_001346111	18203.0	Mm.380410	NM_010946	ENSMUSG00000022681	Ntan1	PNAA|PNAD	N-terminal Asn amidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136658948-2	chr1	136658448	136659448	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24448.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54695419-2	chr13	54694919	54695919	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1459.0	NR_027396	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-90147069-2	chr7	90146569	90147569	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	16856.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-85335875-1	chr15	85335375	85336375	+	548.5	f1_balb.idr	promoter-TSS (NM_016843)	promoter-TSS (NM_016843)	-506.0	NM_016843	54138.0	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding	0.5	1.0	1.5	0.0	5.5	2.5
Merged-chr8-122496508-2	chr8	122496008	122497008	+	548.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357349, exon 19 of 51)	exon (NM_001357349, exon 19 of 51)	20365.0	NR_152823	66965.0	Mm.482288	NM_153775	ENSMUSG00000049482	Ctu2	2310061F22Rik|C16orf84|Ncs2	cytosolic thiouridylase subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25185754-2	chr12	25185254	25186254	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56580.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.0	0.0	0.0	0.0	0.0	2.0
Merged-chr17-32905391-2	chr17	32904891	32905891	+	548.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001204335, exon 13 of 13)	3' UTR (NM_001204335, exon 13 of 13)	11696.0	NM_022434	64385.0	Mm.486449	NM_022434	ENSMUSG00000024292	Cyp4f14	1300014O15Rik|cyp4f-14	cytochrome P450, family 4, subfamily f, polypeptide 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-20895726-2	chr9	20895226	20896226	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016876, intron 7 of 10)	intron (NM_016876, intron 7 of 10)	2864.0	NM_016876	53356.0	Mm.427309	NM_016876	ENSMUSG00000070319	Eif3g	44kDa|D0Jmb4|Eif3s4|TU-189B2|eIF3-p44|p44	eukaryotic translation initiation factor 3, subunit G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-45285284-2	chr2	45284784	45285784	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-167842.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45623141-2	chr17	45622641	45623641	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21039.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-136841255-2	chr4	136840755	136841755	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5243.0	NM_010142	13844.0	Mm.250981	NM_010142	ENSMUSG00000028664	Ephb2	Cek5|Drt|ETECK|Erk|Hek5|Nuk|Prkm5|Qek5|Sek3|Tyro5	Eph receptor B2	protein-coding	4.5	0.0	5.5	6.5	5.5	0.0
Merged-chr12-112642590-2	chr12	112642090	112643090	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-2238.0	NM_001161737	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-7029986-2	chr19	7029486	7030486	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016737, intron 5 of 13)	intron (NM_016737, intron 5 of 13)	10040.0	NM_016737	20867.0	Mm.258633	NM_016737	ENSMUSG00000024966	Stip1	Hop|Sti1|p60	stress-induced phosphoprotein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67567296-2	chr10	67566796	67567796	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	2712.0	NR_155445	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78090924-2	chr10	78090424	78091424	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21556.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120602307-2	chr5	120601807	120602807	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029408, intron 2 of 4)	intron (NM_029408, intron 2 of 4)	10282.0	NM_029096	100764.0	Mm.9654	NM_029096	ENSMUSG00000029600	Rita1	1110008J03Rik|AI853657|C86297|Rita	RBPJ interacting and tubulin associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53502156-2	chr11	53501656	53502656	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-17580.0	NM_033144	20362.0	Mm.274399	NM_033144	ENSMUSG00000018398	Sept8	AW046166|Sepl	septin 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61118816-2	chr18	61118316	61119316	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 10 of 21)	intron (NM_001037859, intron 10 of 21)	1348.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	5.0	14.5	1.0	1.0	0.0	2.0
Merged-chr9-66507782-2	chr9	66507282	66508282	+	548.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175206)	TTS (NM_175206)	6811.0	NM_175206	74165.0	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-70692633-2	chr8	70692133	70693133	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-5106.0	NM_010592	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr17-15678226-2	chr17	15677726	15678726	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26741.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-91810732-2	chr13	91810232	91811232	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3036.0	NM_145453	69085.0	Mm.52356	NM_145453	ENSMUSG00000021621	Zcchc9	1810019C21Rik	zinc finger, CCHC domain containing 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-25376523-2	chr15	25376023	25377023	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	37241.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80291835-2	chr10	80291325	80292325	+	548.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310726)	promoter-TSS (NM_001310726)	-606.0	NM_009091	20054.0	Mm.643	NM_009091	ENSMUSG00000063457	Rps15	rig	ribosomal protein S15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43665694-2	chr19	43665226	43666226	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356944, intron 2 of 2)	intron (NM_001356944, intron 2 of 2)	9155.0	NM_145156	246696.0	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	0.0	0.0	2.0	15.0	0.0	1.0
Merged-chr5-134547086-2	chr5	134546586	134547586	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039162, intron 1 of 15)	RSINE1|SINE|B4	5348.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-144836126-2	chr5	144835596	144836596	+	548.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081362, exon 56 of 71)	exon (NM_001081362, exon 56 of 71)	60720.0	NR_106006	102465629.0		NR_106006	ENSMUSG00000098822	Mir7039	Gm27824|mmu-mir-7039	microRNA 7039	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-17388595-2	chr19	17388095	17389095	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5448.0	NM_019437	54391.0	Mm.7013	NM_019437	ENSMUSG00000024712	Rfk	0610038L10Rik|AF031381|KOI-4	riboflavin kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-51732555-2	chr15	51732055	51733055	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	132906.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30524242-2	chr7	30523742	30524742	+	548.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_178252, exon 21 of 22)	exon (NM_178252, exon 21 of 22)	9120.0	NR_036630	100504207.0	Mm.297831	NM_001004161	ENSMUSG00000062132	Arhgap33os	Gm1082	Rho GTPase activating protein 33, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80133633-2	chr10	80133133	80134133	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_036582, intron 9 of 10)	intron (NR_036582, intron 9 of 10)	3754.0	NM_001195268	100503659.0	Mm.485395	NM_015761	ENSMUSG00000035640	Cbarp	9630008F14|Dos|R29144/1	calcium channel, voltage-dependent, beta subunit associated regulatory protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-129373202-2	chr6	129372702	129373702	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12301.0	NM_027709	71183.0	Mm.79402	NM_027709	ENSMUSG00000030158	Clec12b	4933425B16Rik	C-type lectin domain family 12, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4133256-2	chr19	4132756	4133756	+	548.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025889)	TTS (NM_025889)	6353.0	NM_144532	73660.0	Mm.379226	NM_144532	ENSMUSG00000024842	Cabp4	2410038D05Rik	calcium binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-48339205-2	chr2	48338705	48339705	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-474904.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43917756-2	chr7	43917256	43918256	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-16015.0	NM_174865	317652.0	Mm.389896	NM_174865	ENSMUSG00000055193	Klk15	-	kallikrein related-peptidase 15	protein-coding	0.0	1.0	0.0	0.0	1.0	0.0
Merged-chr12-59135090-2	chr12	59134590	59135590	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001165253, intron 1 of 22)	RMER6A|LTR|ERVK	3637.0	NM_001165253	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	1.0	18.5	2.5	2.5	13.5	3.5
Merged-chr11-107483598-2	chr11	107483098	107484098	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025894, intron 1 of 10)	ORR1C2|LTR|ERVL-MaLR	4070.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	0.5	1.5	1.5	0.0	0.0	0.0
Merged-chr19-25186261-2	chr19	25185761	25186761	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 43 of 47)	intron (NM_028785, intron 43 of 47)	-50714.0	NM_181404	107351.0	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	1.5	0.0	0.0	1.5	0.0	0.0
Merged-chr11-97706853-2	chr11	97706353	97707353	+	548.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011971, exon 3 of 6)	exon (NM_011971, exon 3 of 6)	3419.0	NM_011971	26446.0	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	0.0	0.0	0.5	5.0	0.5	1.0
Merged-chr12-71050147-2	chr12	71049647	71050647	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081195, intron 11 of 23)	intron (NM_001081195, intron 11 of 23)	34180.0	NM_001081195	238247.0	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184846998-2	chr1	184846498	184847498	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1151.0	NM_133684	67247.0	Mm.177724	NM_133684	ENSMUSG00000073481	Marc2	2810484M10Rik|Mosc2|mARC1	mitochondrial amidoxime reducing component 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58878168-2	chr15	58877668	58878668	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	5519.0	NM_026642	68260.0	Mm.278805	NM_026642	ENSMUSG00000037085	Trmt12	4632406N01Rik|AI449275|Tyw2	tRNA methyltranferase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-113044537-2	chr10	113044037	113045037	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115511.0	NM_001033474	382423.0	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132	ataxin 7-like 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180886966-2	chr1	180886466	180887466	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6142.0	NM_177099	320202.0	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-63754673-2	chr17	63754173	63755173	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109308.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98685405-2	chr11	98684905	98685905	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009439, intron 1 of 11)	intron (NM_009439, intron 1 of 11)	2851.0	NM_009439	22123.0	Mm.12194	NM_009439	ENSMUSG00000017221	Psmd3	AI255837|AntP91a|D11Bwg1349e|Psd3|Tstap91a	proteasome (prosome, macropain) 26S subunit, non-ATPase, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166784557-2	chr2	166784057	166785057	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-9210.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80407854-2	chr10	80407354	80408354	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-1033.0	NM_025650	66594.0	Mm.379119	NM_025650	ENSMUSG00000020163	Uqcr11	0710008D09Rik|AL022707|Uqcr	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-24572792-2	chr1	24572292	24573292	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007733, intron 2 of 50)	intron (NM_007733, intron 2 of 50)	14645.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84209949-2	chr15	84209426	84210426	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178614, intron 12 of 14)	intron (NM_178614, intron 12 of 14)	17693.0	NM_178614	68653.0	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	3.5	7.5	8.5	0.0	3.5	2.0
Merged-chr7-28761948-2	chr7	28761448	28762448	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001306222, intron 2 of 5)	intron (NM_001306222, intron 2 of 5)	4696.0	NM_001306222	18036.0	Mm.220333	NM_010908	ENSMUSG00000030595	Nfkbib	I(Kappa)B(beta)|I-kappa-B-beta|IKB-beta|IKappaBbeta|IkB|IkBb|NF-kappa-BIB|ikB-B	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-14841692-2	chr9	14841192	14842192	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-18518.0	NM_001310734	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-24950942-2	chr12	24950442	24951442	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026037, intron 8 of 12)	intron (NM_026037, intron 8 of 12)	-23990.0	NM_001081378	77480.0	Mm.250641	NM_001081378	ENSMUSG00000036333	Kidins220	3110039L19Rik|AI194387|AI316525|C330002I19Rik|mKIAA1250	kinase D-interacting substrate 220	protein-coding	3.0	2.0	15.5	1.0	5.0	1.5
Merged-chr11-101064718-2	chr11	101064218	101065218	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-5376.0	NM_013792	27419.0	Mm.95452	NM_013792	ENSMUSG00000001751	Naglu	-	alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3845739-2	chr12	3845239	3846239	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 2 of 22)	intron (NM_007872, intron 2 of 22)	16505.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62131253-2	chr15	62130753	62131753	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 2 of 6)	PB1D10|SINE|Alu	88198.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80455757-2	chr17	80455257	80456257	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009231, intron 2 of 21)	intron (NM_009231, intron 2 of 21)	24696.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50070320-2	chr17	50069820	50070820	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 4 of 9)	intron (NM_181397, intron 4 of 9)	120177.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-78261756-2	chr16	78261256	78262256	+	548.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6302.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155386945-2	chr2	155386429	155387429	+	548.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178111, exon 4 of 4)	3' UTR (NM_178111, exon 4 of 4)	5073.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	0.0	2.0	0.0	0.0	2.0	1.0
Merged-chr5-35975877-1	chr5	35975377	35976377	+	548.0	f1_c57bl6.idr	intron (NM_027373, intron 10 of 16)	intron (NM_027373, intron 10 of 16)	82558.0	NM_027373	70292.0	Mm.125167	NM_027373	ENSMUSG00000029094	Afap1	2600003E23Rik|9630044L16Rik|AI848729|Afap|mKIAA3018	actin filament associated protein 1	protein-coding	0.0	0.0	0.5	0.0	0.0	2.0
Merged-chr2-11514436-2	chr2	11513965	11514965	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	ORR1F|LTR|ERVL-MaLR	-12375.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-69591243-1	chr5	69590743	69591743	+	548.0	f1_balb.idr	intron (NM_001359239, intron 1 of 6)	intron (NM_001359239, intron 1 of 6)	1061.0	NM_001347363	67980.0	Mm.33830	NM_027681	ENSMUSG00000029209	Gnpda2	4921523I18Rik|4933412A11Rik|BB189630|GNPDA|Gnp2|Sb52|mKIAA4008	glucosamine-6-phosphate deaminase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98820603-2	chr7	98820103	98821103	+	548.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14509.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-55182129-1	chr3	55181629	55182629	+	548.0	f1_balb.idr	promoter-TSS (NM_028937)	promoter-TSS (NM_028937)	85.0	NM_028937	74434.0	Mm.25514	NM_028937	ENSMUSG00000027794	Sohlh2	4933406N12Rik|AI413378|Sosf2	spermatogenesis and oogenesis specific basic helix-loop-helix 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136975924-1	chr5	136975424	136976424	+	548.0	f1_c57bl6.idr	TTS (NM_021719)	TTS (NM_021719)	8055.0	NM_021719	60363.0	Mm.87202	NM_021719	ENSMUSG00000001739	Cldn15	2210009B08Rik|BB107105	claudin 15	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr9-44600490-2	chr9	44599993	44600993	+	548.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4399.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	2.5	0.0	4.0	5.5	0.0	4.5
Merged-chr19-6906065-2	chr19	6905565	6906565	+	548.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001358444)	TTS (NM_001358444)	-3633.0	NM_001166370	67674.0	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	0.0	0.0	0.0	0.0	0.5	1.5
Merged-chr2-125252452-2	chr2	125251952	125252952	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023595, intron 3 of 5)	intron (NM_023595, intron 3 of 5)	4937.0	NM_023595	110074.0	Mm.282499	NM_023595	ENSMUSG00000027203	Dut	5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase	deoxyuridine triphosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-51588056-2	chr18	51587556	51588556	+	548.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	470158.0	NM_001081224	71373.0	Mm.63546	NM_001081224	ENSMUSG00000073565	Prr16	5430406M13Rik|AI607429	proline rich 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16740955-2	chr7	16740455	16741455	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198613, intron 1 of 4)	URR1B|DNA|hAT-Charlie	2511.0	NM_198613	232910.0	Mm.333597	NM_198613	ENSMUSG00000008036	Ap2s1	AI043088	adaptor-related protein complex 2, sigma 1 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-79546483-1	chr14	79545983	79546983	+	548.0	f1_c57bl6.idr	intron (NM_007920, intron 2 of 8)	Lx5|LINE|L1	30809.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-103247459-1	chr15	103246959	103247959	+	548.0	f1_balb.idr	TTS (NM_001302339)	TTS (NM_001302339)	4217.0	NM_001302338	18022.0	Mm.457989	NM_008685	ENSMUSG00000058794	Nfe2	NF-E2|NF-E2/P45|p45|p45NFE2|p45nf-e2	nuclear factor, erythroid derived 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128766566-1	chr2	128766066	128767066	+	548.0	f1_c57bl6.idr	intron (NM_008587, intron 8 of 18)	intron (NM_008587, intron 8 of 18)	-51737.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	12.0	36.0	11.0	20.5	40.5	22.5
Merged-chr2-173081101-3	chr2	173080602	173081602	+	548.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38423.0	NM_001081387	664799.0	Mm.389396	NM_001081387	ENSMUSG00000070495	Ctcfl	Boris	CCCTC-binding factor (zinc finger protein)-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112913961-1	chr12	112913461	112914461	+	548.0	f0_balb.idr	exon (NM_010588, exon 15 of 26)	exon (NM_010588, exon 15 of 26)	6580.0	NR_105906	102465567.0		NR_105906	ENSMUSG00000098338	Mir6941	Gm27923|mmu-mir-6941	microRNA 6941	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-35482446-1	chr3	35481946	35482946	+	548.0	f0_balb.idr	Intergenic	Intergenic	183717.0	NR_040748	625963.0	Mm.251506	NR_040748	ENSMUSG00000105662	Gm6639	-	predicted gene 6639	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101896279-2	chr5	101895779	101896779	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 35 of 66)	intron (NM_172882, intron 35 of 66)	131149.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-76523171-1	chr15	76522671	76523671	+	548.0	f0_balb.idr	Intergenic	CpG	-1042.0	NM_130893	170729.0	Mm.218747	NM_130893	ENSMUSG00000048385	Scrt1	-	scratch family zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91403890-1	chr1	91403390	91404390	+	548.0	f1_balb.idr	TTS (NR_026924)	TTS (NR_026924)	2139.0	NR_026924	67086.0	Mm.396158	NR_026924	ENSMUSG00000100253	1700020N18Rik	-	RIKEN cDNA 1700020N18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-109479740-1	chr14	109479240	109480240	+	548.0	f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	-565501.0	NM_199065	76965.0	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87498530-2	chr6	87498030	87499030	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	-2203.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	2.0	14.0	4.0	0.0	6.5	1.5
Merged-chr1-190270381-1	chr1	190269881	190270881	+	548.0	f1_balb.idr	Intergenic	Intergenic	-99554.0	NM_008937	19130.0	Mm.132579	NM_008937	ENSMUSG00000010175	Prox1	A230003G05Rik|PROX-1	prospero homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21322697-2	chr9	21322197	21323197	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359227, intron 1 of 22)	intron (NM_001359227, intron 1 of 22)	1978.0	NM_001199186	68682.0	Mm.148425	NM_152808	ENSMUSG00000057193	Slc44a2	1110028E10Rik|CTL2	solute carrier family 44, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-90543300-1	chr2	90542800	90543800	+	548.0	f0_balb.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	37347.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	17.5	40.0	37.5	16.5	41.5	34.5
Merged-chr17-5651032-1	chr17	5650532	5651532	+	548.0	f1_c57bl6.idr	intron (NM_146073, intron 2 of 8)	intron (NM_146073, intron 2 of 8)	-147625.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-106875800-1	chr4	106875300	106876300	+	548.0	f0_balb.idr	Intergenic	Intergenic	-35670.0	NM_198438	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10392070-1	chr19	10391570	10392570	+	548.0	f1_balb.idr	intron (NM_018801, intron 1 of 8)	intron (NM_018801, intron 1 of 8)	2980.0	NM_173068	54525.0	Mm.182654	NM_018801	ENSMUSG00000024743	Syt7	AI851541|B230112P13Rik	synaptotagmin VII	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-16060255-1	chr8	16059755	16060755	+	548.0	f1_c57bl6.idr	intron (NM_053171, intron 36 of 69)	intron (NM_053171, intron 36 of 69)	108583.0	NR_037214	100526464.0		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA	0.0	1.0	0.0	3.5	0.0	0.0
Merged-chr1-120450877-2	chr1	120450377	120451377	+	548.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54147.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr4-40183656-2	chr4	40183156	40184156	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007386, intron 13 of 20)	intron (NM_007386, intron 13 of 20)	40391.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91271880-2	chr2	91271365	91272365	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023854, intron 10 of 15)	ID_B1|SINE|B4	6750.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	2.5	34.0	4.0	14.0	9.0	3.5
Merged-chr14-66150889-1	chr14	66150389	66151389	+	548.0	f1_balb.idr	intron (NM_144803, intron 6 of 6)	intron (NM_144803, intron 6 of 6)	9929.0	NM_144803	110902.0	Mm.57350	NM_144803	ENSMUSG00000022041	Chrna2	Acra-2|Acra2|BC011490	cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124670097-1	chr2	124669597	124670597	+	548.0	f0_balb.idr	Intergenic	Intergenic	16516.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-129352855-2	chr1	129352355	129353355	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172485, intron 1 of 27)	MLTR14|LTR|ERV1	79551.0	NM_172485	210417.0	Mm.380518	NM_172485	ENSMUSG00000042581	Thsd7b	1700074E13Rik|B930082A18|D130067I03Rik	thrombospondin, type I, domain containing 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54127091-1	chr11	54126591	54127591	+	548.0	f0_balb.idr	intron (NM_011031, intron 13 of 15)	intron (NM_011031, intron 13 of 15)	26167.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114659239-1	chr5	114658739	114659739	+	548.0	f1_c57bl6.idr	promoter-TSS (NM_022017)	promoter-TSS (NM_022017)	-818.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0.0	4.0	1.0	0.0	0.0	0.5
Merged-chr19-45789602-2	chr19	45789102	45790102	+	548.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6049.0	NM_023799	76055.0	Mm.122725	NM_023799	ENSMUSG00000025220	Mgea5	Hy5|Ncoat|OGA	meningioma expressed antigen 5 (hyaluronidase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-12017479-1	chr10	12016979	12017979	+	548.0	f0_balb.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	408255.0	NM_013898	30058.0	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	0.0	1.5	0.0	1.0	1.5	1.0
Merged-chr14-107941107-2	chr14	107940607	107941607	+	548.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	973132.0	NM_199065	76965.0	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114990880-1	chr11	114990380	114991380	+	548.0	f1_balb.idr	promoter-TSS (NM_145437)	promoter-TSS (NM_145437)	-994.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119394174-2	chr8	119393674	119394674	+	548.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019966)	promoter-TSS (NM_019966)	-718.0	NM_019966	56690.0	Mm.423037	NM_019966	ENSMUSG00000074064	Mlycd	AI324784|Mcd	malonyl-CoA decarboxylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46267778-1	chr18	46267278	46268278	+	548.0	f1_balb.idr	intron (NM_172627, intron 2 of 8)	intron (NM_172627, intron 2 of 8)	13072.0	NM_172627	225467.0	Mm.262096	NM_172627	ENSMUSG00000024477	Pggt1b	2010207C17Rik|2610100E13|AI451237|AI551093|BGG1|GGT1	protein geranylgeranyltransferase type I, beta subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79240084-1	chr3	79239584	79240584	+	548.0	f1_c57bl6.idr	intron (NR_045502, intron 1 of 2)	L1_Mus1|LINE|L1	27165.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	0.0	2.0	0.0	0.0	0.0	0.5
Merged-chr7-80216626-1	chr7	80216126	80217126	+	548.0	f1_balb.idr	intron (NM_001360135, intron 5 of 13)	intron (NM_001360135, intron 5 of 13)	16179.0	NM_001291276	23991.0	Mm.30217	NM_011870	ENSMUSG00000030538	Cib1	Cibkip|Kip|Prkdcip	calcium and integrin binding 1 (calmyrin)	protein-coding	0.0	0.0	0.0	0.0	1.0	0.5
Merged-chr10-79977528-1	chr10	79977028	79978028	+	548.0	f1_balb.idr	TTS (NM_130455)	TTS (NM_130455)	6732.0	NM_001359632	216157.0	Mm.29442	NM_001003949	ENSMUSG00000013858	Tmem259	AC087114.7gm2|ORF61|R32184_3|mFLJ00277	transmembrane protein 259	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-151342426-2	chr1	151341926	151342926	+	548.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2060.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-170898010-1	chr1	170897510	170898510	+	548.0	f1_balb.idr	Intergenic	Intergenic	-12470.0	NM_023173	80915.0	Mm.34365	NM_023173	ENSMUSG00000026659	Dusp12	1190004O14Rik|AA027408|AW049275|ESTM36|LMW-DSP4|T-DSP4|VH1|mVH1	dual specificity phosphatase 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-41761026-2	chr4	41760526	41761526	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163401, intron 1 of 12)	intron (NM_001163401, intron 1 of 12)	583.0	NM_001172054	16157.0	Mm.193451	NM_010549	ENSMUSG00000073889	Il11ra1	AI314697|GP130|Il-11ra|Il11ra|Il11ra2|NR1	interleukin 11 receptor, alpha chain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-32634569-1	chr12	32634069	32635069	+	548.0	f1_c57bl6.idr	Intergenic	Intergenic	-185766.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.5	1.5	0.0	0.0	1.5	2.0
Merged-chr17-13012239-2	chr17	13011739	13012739	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013671, intron 3 of 4)	ID2|SINE|ID	4400.0	NM_013671	20656.0	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142393533-1	chr3	142393033	142394033	+	548.0	f1_balb.idr	intron (NM_001190854, intron 1 of 12)	intron (NM_001190854, intron 1 of 12)	-1683.0	NM_001190857	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-99140671-2	chr3	99140171	99141171	+	548.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027462)	promoter-TSS (NM_027462)	-419.0	NM_027462	70560.0	Mm.316754	NM_027462	ENSMUSG00000004233	Wars2	5730427B17Rik|9430020O07Rik|AI413375|TrpRS	tryptophanyl tRNA synthetase 2 (mitochondrial)	protein-coding	25.5	29.0	31.0	12.5	54.0	22.5
Merged-chr7-28597499-1	chr7	28596999	28597999	+	548.0	f1_balb.idr	intron (NM_027470, intron 1 of 9)	intron (NM_027470, intron 1 of 9)	685.0	NM_027470	70584.0	Mm.21876	NM_027470	ENSMUSG00000030602	Pak4	5730488L07Rik|AW555722|mKIAA1142	p21 (RAC1) activated kinase 4	protein-coding	0.5	13.0	9.5	6.5	4.0	5.5
Merged-chr9-23877048-2	chr9	23876548	23877548	+	548.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-220970.0	NM_175678	319239.0	Mm.130824	NM_175678	ENSMUSG00000043659	Npsr1	9330128H10Rik|GPRA|Gpr154|MVTR|PGR14|VRR1	neuropeptide S receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-70660962-1	chr2	70660462	70661462	+	548.0	f1_balb.idr	promoter-TSS (NM_027352)	promoter-TSS (NM_027352)	-547.0	NR_027343	70231.0	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-10309765-1	chr3	10309265	10310265	+	548.0	f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-8582.0	NM_029310	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3226863-2	chr4	3226363	3227363	+	548.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-41558.0	NM_001167535	100312471.0	Mm.377218	NM_001167535	ENSMUSG00000115466	Vmn1r3	Gm11778	vomeronasal 1 receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93167478-1	chr10	93166978	93167978	+	548.0	f0_balb.idr	intron (NM_146239, intron 1 of 16)	B4A|SINE|B4	4693.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	69.0	74.5	52.5	23.5	45.5	24.0
Merged-chr3-89223385-1	chr3	89222885	89223885	+	548.0	f1_balb.idr	intron (NR_149740, intron 12 of 20)	intron (NR_149740, intron 12 of 20)	3813.0	NR_030579	100124470.0		NR_030579	ENSMUSG00000076255	Mir92b	Mirn92b|mir-92b|mmu-mir-92b	microRNA 92b	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-68583828-1	chr13	68583328	68584328	+	548.0	f0_balb.idr	non-coding (NR_138477, exon 2 of 7)	non-coding (NR_138477, exon 2 of 7)	1618.0	NR_138478	69577.0	Mm.23670	NM_027123	ENSMUSG00000021532	Fastkd3	2310010B21Rik|AW048587	FAST kinase domains 3	protein-coding	0.0	2.5	2.0	10.0	4.5	7.5
Merged-chr2-73020026-1	chr2	73019526	73020526	+	548.0	f0_balb.idr	Intergenic	Intergenic	-39580.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12215099-1	chr15	12214599	12215599	+	548.0	f1_c57bl6.idr	intron (NM_001356498, intron 1 of 15)	intron (NM_001356498, intron 1 of 15)	10071.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115548056-1	chr5	115547556	115548556	+	548.0	f1_c57bl6.idr	intron (NM_011223, intron 6 of 10)	intron (NM_011223, intron 6 of 10)	-11411.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	1.5	0.0	0.0	6.0	4.0	0.0
Merged-chr8-106140419-1	chr8	106139919	106140919	+	548.0	f1_c57bl6.idr	Intergenic	Intergenic	-3445.0	NM_176838	77411.0	Mm.183003	NM_176838	ENSMUSG00000084128	Esrp2	9530027K23Rik|Rbm35b	epithelial splicing regulatory protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32900126-1	chr2	32899626	32900626	+	548.0	f1_c57bl6.idr	intron (NM_146119, intron 1 of 13)	intron (NM_146119, intron 1 of 13)	23992.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53116501-1	chr4	53116001	53117001	+	548.0	f0_balb.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	43394.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	1.0	8.5	5.5	8.0	6.0	9.0
Merged-chr2-164921759-2	chr2	164921259	164922259	+	548.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10009.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	0.0	0.0	0.5	0.0	1.5	0.0
Merged-chr2-118895223-1	chr2	118894723	118895723	+	548.0	f1_c57bl6.idr	Intergenic	Intergenic	-6392.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	0.0	1.5	6.5	2.0	2.5	1.5
Merged-chr7-139393804-1	chr7	139393304	139394304	+	548.0	f1_c57bl6.idr	intron (NM_183144, intron 1 of 15)	B3|SINE|B2	4695.0	NM_001127363	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5795235-1	chr2	5794735	5795735	+	548.0	f1_balb.idr	intron (NM_133837, intron 12 of 12)	intron (NM_133837, intron 12 of 12)	-49799.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	4.5	0.0	7.5	5.0	2.0	9.0
Merged-chr19-40703850-1	chr19	40703350	40704350	+	548.0	f1_balb.idr	intron (NM_009848, intron 1 of 9)	B4A|SINE|B4	44080.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	12.0	0.0	3.0	6.5	0.0	5.5
Merged-chr11-117242344-2	chr11	117241844	117242844	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 2 of 11)	intron (NM_001113486, intron 2 of 11)	-23902.0	NM_001113487	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80352926-2	chr10	80352426	80353426	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-3533.0	NM_183152	216166.0	Mm.17613	NM_183152	ENSMUSG00000035486	Plk5	6330514A18Rik	polo like kinase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-47610508-1	chr10	47610008	47611008	+	548.0	f1_balb.idr	Intergenic	RLTR10B2|LTR|ERVK	1365759.0	NR_028276	108637.0		NR_028276	ENSMUSG00000096263	Snord14c	Gm23107|Rnu14|U14	small nucleolar RNA, C/D box 14C	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-83643631-2	chr17	83643131	83644131	+	548.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11736.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-73098365-2	chr14	73097865	73098865	+	548.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44145.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-67784956-1	chr15	67784456	67785456	+	548.0	f1_balb.idr	Intergenic	Intergenic	473900.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	7.5	13.0	7.0	3.5	3.0	13.5
Merged-chr18-82754319-1	chr18	82753819	82754819	+	548.0	f1_c57bl6.idr	TTS (NR_045389)	TTS (NR_045389)	4720.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-36390929-1	chr19	36390429	36391429	+	548.0	f0_balb.idr	intron (NM_029508, intron 1 of 8)	intron (NM_029508, intron 1 of 8)	11862.0	NM_029508	76073.0	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr19-5922083-1	chr19	5921583	5922583	+	548.0	f1_balb.idr	intron (NM_026772, intron 1 of 1)	intron (NM_026772, intron 1 of 1)	2733.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	0.0	6.5	0.0	0.5	0.0	0.0
Merged-chr10-118973915-2	chr10	118973415	118974415	+	548.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46772.0	NR_110482	216377.0	Mm.208936	NR_110482	ENSMUSG00000112854	Gm38403	C230029M16	predicted gene, 38403	ncRNA	0.0	5.5	0.5	0.0	5.0	8.0
Merged-chr11-94986446-1	chr11	94985946	94986946	+	548.0	f0_balb.idr	Intergenic	Intergenic	-4766.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27021441-1	chr17	27020941	27021941	+	548.0	f1_balb.idr	intron (NM_007523, intron 4 of 5)	intron (NM_007523, intron 4 of 5)	3406.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-21782460-2	chr19	21781960	21782960	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031997, intron 2 of 24)	intron (NM_031997, intron 2 of 24)	4120.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83606670-2	chr8	83606160	83607160	+	548.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-1515.0	NM_018808	81489.0	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	0.5	14.0	1.0	0.0	6.0	1.0
Merged-chr11-114694640-2	chr11	114694140	114695140	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 3 of 13)	RLTR11A|LTR|ERVK	19172.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-59136309-1	chr12	59135809	59136809	+	548.0	f1_balb.idr	intron (NM_001165253, intron 2 of 22)	B3|SINE|B2	4856.0	NM_001165253	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	2.5	15.0	3.0	0.0	4.0	2.5
Merged-chr7-99449223-2	chr7	99448723	99449723	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201352, intron 10 of 17)	B1F2|SINE|Alu	-16781.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78352075-1	chr11	78351575	78352575	+	548.0	f1_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	5365.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-54571932-2	chr13	54571432	54572432	+	548.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3081.0	NM_019968	56795.0	Mm.89484	NM_019968	ENSMUSG00000025870	Arl10	Arl10a|Arm1	ADP-ribosylation factor-like 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-33939804-1	chr13	33939304	33940304	+	548.0	f1_c57bl6.idr	intron (NR_040707, intron 1 of 4)	MMERVK9E_I-int|LTR|ERVK	-3721.0	NM_001164117	20719.0	Mm.252210	NM_009254	ENSMUSG00000060147	Serpinb6a	4930482L21Rik|D330015H01Rik|PI-6|Serpinb6|Spi3|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43555508-1	chr4	43555008	43556008	+	548.0	f1_balb.idr	intron (NM_011602, intron 5 of 56)	intron (NM_011602, intron 5 of 56)	7075.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-119898687-1	chr9	119898187	119899187	+	548.0	f1_c57bl6.idr	intron (NM_026236, intron 1 of 18)	PB1D9|SINE|Alu	3792.0	NM_026236	67561.0	Mm.104789	NM_026236	ENSMUSG00000032512	Wdr48	8430408H12Rik|Uaf1|mKIAA1449	WD repeat domain 48	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-70634714-2	chr13	70634214	70635214	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144837, intron 1 of 18)	intron (NM_144837, intron 1 of 18)	2920.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70250288-1	chr11	70249788	70250788	+	548.0	f1_c57bl6.idr	intron (NM_007440, intron 7 of 13)	L2b|LINE|L2	5082.0	NM_001331118	11684.0	Mm.12286	NM_007440	ENSMUSG00000000320	Alox12	9930022G08Rik|Alox12p|P-12LO	arachidonate 12-lipoxygenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83086696-1	chr8	83086196	83087196	+	548.0	f1_balb.idr	3' UTR (NM_177378, exon 7 of 7)	3' UTR (NM_177378, exon 7 of 7)	-78656.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	5.0	5.5	6.0	0.5	9.0	7.0
Merged-chr13-46930957-1	chr13	46930457	46931457	+	548.0	f0_c57.idr	Intergenic	Intergenic	-1239.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	4.0	19.5	3.5	0.5	5.5	6.0
Merged-chr2-122571340-1	chr2	122570840	122571840	+	548.0	f1_balb.idr	Intergenic	Intergenic	39937.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	22.5	29.5	27.5	47.5	102.0	86.5
Merged-chr3-90222187-1	chr3	90221687	90222687	+	548.0	f1_c57bl6.idr	intron (NM_026677, intron 1 of 7)	intron (NM_026677, intron 1 of 7)	1403.0	NM_026677	68328.0	Mm.29355	NM_026677	ENSMUSG00000027935	Rab13	0610007N03Rik|B230212B15Rik	RAB13, member RAS oncogene family	protein-coding	5.0	0.0	8.5	0.5	0.0	1.0
Merged-chr17-56875881-2	chr17	56875381	56876381	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030141, intron 1 of 13)	B4A|SINE|B4	248.0	NM_030141	78625.0	Mm.160106	NM_030141	ENSMUSG00000024209	1700061G19Rik	1700026H02|AI507598	RIKEN cDNA 1700061G19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-21353019-2	chr16	21352519	21353519	+	548.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19663.0	NR_131983	76222.0	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97704728-2	chr11	97704228	97705228	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011971, intron 2 of 5)	B3|SINE|B2	1294.0	NM_011971	26446.0	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-16535464-1	chr16	16534964	16535964	+	548.0	f0_c57.idr	intron (NM_001301817, intron 1 of 16)	RMER10A|LTR|ERVL	-8053.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35132854-2	chr2	35132354	35133354	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290635, intron 1 of 8)	intron (NM_001290635, intron 1 of 8)	620.0	NM_001290635	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-55435770-2	chr12	55435270	55436270	+	548.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36945.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-107803001-2	chr4	107802494	107803494	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080926, intron 1 of 18)	CpG	735.0	NM_001080926	16975.0	Mm.442134	NM_053073	ENSMUSG00000028613	Lrp8	4932703M08Rik|AA921429|AI848122|ApoER2|Lr8b	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	protein-coding	0.0	5.5	1.5	1.5	1.5	2.5
Merged-chr2-32915192-2	chr2	32914692	32915692	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146119, intron 5 of 13)	intron (NM_146119, intron 5 of 13)	39058.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8516015-1	chr12	8515515	8516515	+	548.0	f1_balb.idr	Intergenic	Intergenic	-16006.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	2.5	5.0	15.5	0.0	7.5	12.0
Merged-chr10-80324757-2	chr10	80324257	80325257	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008793, intron 8 of 14)	intron (NM_008793, intron 8 of 14)	-4209.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80052360-1	chr11	80051860	80052860	+	548.0	f1_balb.idr	intron (NM_018776, intron 6 of 7)	MTD|LTR|ERVL-MaLR	28631.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-120634420-1	chr7	120633920	120634920	+	548.0	f0_balb.idr	promoter-TSS (NM_025899)	promoter-TSS (NM_025899)	-769.0	NM_025899	67003.0	Mm.334206	NM_025899	ENSMUSG00000030884	Uqcrc2	1500004O06Rik	ubiquinol cytochrome c reductase core protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133410709-1	chr4	133410209	133411209	+	548.0	f1_balb.idr	intron (NM_016981, intron 1 of 11)	intron (NM_016981, intron 1 of 11)	40933.0	NR_039582	100628620.0		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	1.0	1.5	6.5	3.0	0.0	3.0
Merged-chr15-25902179-1	chr15	25901679	25902679	+	548.0	f1_c57bl6.idr	intron (NM_001034851, intron 3 of 8)	MLT1D|LTR|ERVL-MaLR	-31373.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38584850-1	chr18	38584350	38585350	+	548.0	f1_balb.idr	Intergenic	Intergenic	16418.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-5187351-1	chr18	5186851	5187851	+	548.0	f0_balb.idr	Intergenic	Intergenic	-21620.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70756438-1	chr17	70755938	70756938	+	548.0	f1_balb.idr	intron (NM_001347411, intron 9 of 14)	B3|SINE|B2	90339.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-47028701-1	chr7	47028201	47029201	+	548.0	f1_balb.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-20287.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-69241845-1	chr1	69241345	69242345	+	548.0	f0_balb.idr	Intergenic	Intergenic	-133786.0	NM_010154	13869.0	Mm.442420	NM_010154	ENSMUSG00000062209	Erbb4	Her4|c-erbB-4	erb-b2 receptor tyrosine kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135774610-1	chr5	135774110	135775110	+	548.0	f1_balb.idr	intron (NM_029659, intron 1 of 8)	MTD|LTR|ERVL-MaLR	3691.0	NM_001289554	76571.0	Mm.247666	NM_029659	ENSMUSG00000019178	Styxl1	1700011C14Rik|Dusp24|Mkstyx	serine/threonine/tyrosine interacting-like 1	protein-coding	0.0	0.0	3.0	0.5	3.0	2.0
Merged-chr9-51990989-1	chr9	51990489	51991489	+	548.0	f1_balb.idr	Intergenic	Intergenic	-27387.0	NM_007996	14148.0	Mm.1061	NM_007996	ENSMUSG00000032051	Fdx1	-	ferredoxin 1	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr10-119057936-1	chr10	119057436	119058436	+	548.0	f1_c57bl6.idr	Intergenic	Intergenic	-7437.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-80204665-1	chr17	80204165	80205165	+	548.0	f1_balb.idr	non-coding (NR_036615, exon 4 of 9)	non-coding (NR_036615, exon 4 of 9)	2640.0	NM_001195486	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-130788600-1	chr7	130788100	130789100	+	548.0	f1_c57bl6.idr	intron (NM_001081038, intron 5 of 15)	intron (NM_001081038, intron 5 of 15)	14531.0	NM_001081038	330660.0	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-79527774-2	chr3	79527274	79528274	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	39905.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.0	1.0	3.0	2.0	1.0	1.0
Merged-chr2-180291020-1	chr2	180290520	180291520	+	548.0	f1_c57bl6.idr	Intergenic	Intergenic	-1141.0	NM_173031	271887.0	Mm.246640	NM_173031	ENSMUSG00000038980	Rbbp8nl	4732416F18	RBBP8 N-terminal like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-51226201-1	chr19	51225701	51226701	+	548.0	f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-547555.0	NM_001290356	58178.0	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103173788-1	chr3	103173288	103174288	+	548.0	f1_c57bl6.idr	intron (NM_001356330, intron 3 of 5)	intron (NM_001356330, intron 3 of 5)	2133.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27771264-2	chr2	27770764	27771764	+	548.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12C|LTR|ERVK	60681.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47843325-1	chr9	47842825	47843825	+	548.0	f1_c57bl6.idr	intron (NM_001310841, intron 10 of 11)	intron (NM_001310841, intron 10 of 11)	-25117.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	0.0	0.0	1.0	1.5	8.0	4.5
Merged-chr12-24657054-1	chr12	24656554	24657554	+	548.0	f1_c57bl6.idr	intron (NM_178357, intron 3 of 3)	intron (NM_178357, intron 3 of 3)	5683.0	NM_178357	194655.0	Mm.9616	NM_178357	ENSMUSG00000020653	Klf11	9830142A17|D12Ertd427e|Tieg2|Tieg2b|Tieg3	Kruppel-like factor 11	protein-coding	6.5	2.0	0.0	0.0	3.0	1.0
Merged-chr6-96113055-1	chr6	96112555	96113555	+	548.0	f1_c57bl6.idr	promoter-TSS (NM_182808)	promoter-TSS (NM_182808)	-99.0	NM_182808	320265.0	Mm.489890	NM_182808	ENSMUSG00000059187	Fam19a1	C630007B19Rik|FAM19A1 TAFA-1|TAFA1|Tafa-1	family with sequence similarity 19, member A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4690789-2	chr16	4690289	4691289	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001135112, intron 3 of 10)	B2_Mm2|SINE|B2	6719.0	NM_001135112	83945.0	Mm.248337	NM_023646	ENSMUSG00000004069	Dnaja3	1200003J13Rik|1810053A11Rik|C81173|Tid-1|Tid1l	DnaJ heat shock protein family (Hsp40) member A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62202674-1	chr10	62202174	62203174	+	548.0	f1_balb.idr	intron (NM_197996, intron 2 of 7)	intron (NM_197996, intron 2 of 7)	-8447.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31532086-1	chr6	31531586	31532586	+	548.0	f1_c57bl6.idr	intron (NM_013723, intron 1 of 7)	ORR1C2|LTR|ERVL-MaLR	31851.0	NM_013723	27205.0	Mm.89918	NM_013723	ENSMUSG00000025608	Podxl	AW121214|Ly102|PC|PCLP-1|Pclp1|Podxl1	podocalyxin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114772480-1	chr11	114771980	114772980	+	548.0	f1_balb.idr	intron (NM_001102615, intron 2 of 19)	intron (NM_001102615, intron 2 of 19)	7091.0	NM_001102615	286942.0	Mm.308713	NM_001102615	ENSMUSG00000010021	Kif19a	Kif19	kinesin family member 19A	protein-coding	0.0	0.0	0.5	0.0	0.0	0.5
Merged-chr17-93367454-1	chr17	93366954	93367954	+	548.0	f1_balb.idr	Intergenic	Intergenic	168286.0	NM_009625	11516.0	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding	1.0	0.0	0.5	2.0	1.0	2.5
Merged-chr2-163596137-2	chr2	163595637	163596637	+	548.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6177.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141438307-1	chr7	141437807	141438807	+	548.0	f1_c57bl6.idr	promoter-TSS (NM_026646)	promoter-TSS (NM_026646)	-433.0	NM_001360724	68267.0	Mm.33729	NM_026646	ENSMUSG00000019082	Slc25a22	1300006L01Rik|AI060884|Gc1	solute carrier family 25 (mitochondrial carrier, glutamate), member 22	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99571826-1	chr5	99571326	99572326	+	548.0	f1_balb.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	157234.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-33235555-1	chr4	33235055	33236055	+	548.0	f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	13232.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104583431-1	chr9	104582931	104583931	+	548.0	f0_balb.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	13948.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	7.5	0.0	2.5	19.0	17.5	28.5
Merged-chr10-59888485-2	chr10	59887985	59888985	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019965, intron 1 of 8)	B4A|SINE|B4	8894.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-115647950-1	chr12	115647450	115648450	+	548.0	f1_c57bl6.idr	Intergenic	Intergenic	47844.0	NR_105810	102465205.0		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-103775379-1	chr10	103774879	103775879	+	548.0	f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-367608.0	NM_001270898	100861880.0	Mm.441727	NM_001270898	ENSMUSG00000091779	Gm21293	-	predicted gene, 21293	protein-coding	15.5	10.0	0.0	7.5	11.0	1.0
Merged-chr6-135149237-1	chr6	135148737	135149737	+	548.0	f1_c57bl6.idr	intron (NM_013546, intron 3 of 3)	RMER1B|Other|Other	18978.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	0.0	4.0	4.0	0.0	0.5	1.0
Merged-chr3-148333684-1	chr3	148333184	148334184	+	548.0	f1_balb.idr	Intergenic	MTEa|LTR|ERVL-MaLR	620951.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	2.0	4.0	0.5	1.5	5.5	2.5
Merged-chr8-95017270-1	chr8	95016770	95017770	+	548.0	f1_c57bl6.idr	promoter-TSS (NM_173036)	promoter-TSS (NM_173036)	-422.0	NM_173036	54672.0	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-36868917-1	chr14	36868417	36869417	+	548.0	f1_balb.idr	Intergenic	Intergenic	50618.0	NM_001347503	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-82908074-1	chr10	82907574	82908574	+	548.0	f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	41448.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	0.0	12.0	1.0	6.0	0.0	2.0
Merged-chr15-31455675-2	chr15	31455175	31456175	+	548.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172606)	TTS (NM_172606)	-1986.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166941905-1	chr2	166941405	166942405	+	548.0	f1_c57bl6.idr	intron (NM_023565, intron 21 of 24)	intron (NM_023565, intron 21 of 24)	22812.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-53565782-2	chr17	53565282	53566282	+	548.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1189.0	NM_020005	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122979010-1	chr5	122978510	122979510	+	548.0	f1_balb.idr	intron (NM_001003953, intron 4 of 22)	intron (NM_001003953, intron 4 of 22)	10089.0	NM_001003953	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	1.0	4.5	1.5	0.0	2.0	4.0
Merged-chr13-110564104-1	chr13	110563604	110564604	+	548.0	f1_balb.idr	Intergenic	Intergenic	169060.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150582195-1	chr4	150581695	150582695	+	548.0	f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	69979.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	5.0	15.5	17.5	7.0	29.5	20.0
Merged-chr2-118746788-1	chr2	118746288	118747288	+	548.0	f0_c57.idr	3' UTR (NM_001301269, exon 1 of 1)	3' UTR (NM_001301269, exon 1 of 1)	1030.0	NM_001301269	100043272.0	Mm.398072	NM_001301269	ENSMUSG00000074918	Inafm2	5430417L22Rik	InaF motif containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115992411-2	chr11	115991911	115992911	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005608, intron 23 of 39)	MIRb|SINE|MIR	1304.0	NR_152190	100038636.0	Mm.450138	NR_152190		B230344G16Rik	-	RIKEN cDNA B230344G16 gene	ncRNA	0.0	1.5	0.0	0.0	1.5	0.0
Merged-chr3-101291227-1	chr3	101290727	101291727	+	548.0	f0_balb.idr	Intergenic	Intergenic	-3288.0	NM_013486	12481.0	Mm.22842	NM_013486	ENSMUSG00000027863	Cd2	LFA-2|Ly-37|Ly37	CD2 antigen	protein-coding	0.0	3.5	0.0	0.5	1.5	1.0
Merged-chr4-145036445-2	chr4	145035945	145036945	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 65 of 69)	intron (NM_001276465, intron 65 of 69)	143308.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-65998200-1	chr5	65997700	65998700	+	548.0	f1_balb.idr	intron (NR_027961, intron 4 of 6)	ORR1A4|LTR|ERVL-MaLR	6085.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	2.0	0.0	1.0	2.0	0.0	0.0
Merged-chr1-135583578-1	chr1	135583078	135584078	+	548.0	f1_balb.idr	intron (NM_173437, intron 1 of 28)	intron (NM_173437, intron 1 of 28)	1777.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172302549-1	chr1	172302049	172303049	+	548.0	f0_balb.idr	Intergenic	Intergenic	-4485.0	NM_178405	98660.0	Mm.207432	NM_178405	ENSMUSG00000007097	Atp1a2	AW060654|Atpa-3|mKIAA0778	ATPase, Na+/K+ transporting, alpha 2 polypeptide	protein-coding	0.0	0.5	2.0	7.0	3.5	2.5
Merged-chr9-37252569-1	chr9	37252069	37253069	+	548.0	f1_c57bl6.idr	intron (NM_001145960, intron 1 of 18)	MER92-int|LTR|ERV1	3169.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-41629649-1	chr19	41629149	41630149	+	548.0	f1_balb.idr	intron (NM_015748, intron 22 of 36)	intron (NM_015748, intron 22 of 36)	40998.0	NR_106166	102465884.0		NR_106166	ENSMUSG00000098286	Mir8091	Gm27575|mmu-mir-8091	microRNA 8091	ncRNA	0.0	0.0	0.0	2.0	2.0	0.5
Merged-chr4-148956526-1	chr4	148956026	148957026	+	548.0	f1_balb.idr	Intergenic	Intergenic	-4204.0	NR_154553	108168987.0	Mm.393596	NR_154553		Gm13205	AA408865	predicted gene 13205	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117211593-1	chr5	117211093	117212093	+	548.0	f1_balb.idr	intron (NM_001081308, intron 8 of 19)	RMER1B|Other|Other	75971.0	NM_018858	23980.0	Mm.195898	NM_018858	ENSMUSG00000032959	Pebp1	HCNP|Pbp|Pbp1|Pbpr|Rkip	phosphatidylethanolamine binding protein 1	protein-coding	0.0	0.0	0.0	0.5	0.0	1.0
Merged-chr7-139951314-1	chr7	139950814	139951814	+	548.0	f1_c57bl6.idr	Intergenic	Intergenic	6308.0	NR_106157	102465788.0		NR_106157	ENSMUSG00000105165	Mir7686	mmu-mir-7686	microRNA 7686	ncRNA	0.0	16.0	10.5	0.0	5.5	0.5
Merged-chr17-10193452-1	chr17	10192952	10193952	+	548.0	f1_c57bl6.idr	Intergenic	Intergenic	125909.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-11852816-1	chr19	11852316	11853316	+	548.0	f1_balb.idr	Intergenic	RLTR53_Mm|LTR|ERVK	3135.0	NM_001011524	258227.0	Mm.377385	NM_001011524	ENSMUSG00000060556	Olfr1418	MOR266-5	olfactory receptor 1418	protein-coding	3.0	0.0	0.5	11.0	5.0	2.0
Merged-chr4-3676278-1	chr4	3675778	3676778	+	548.0	f1_balb.idr	Intergenic	Intergenic	-1843.0	NM_001111096	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-45122713-1	chr10	45122213	45123213	+	548.0	f0_balb.idr	intron (NM_011156, intron 9 of 14)	intron (NM_011156, intron 9 of 14)	55499.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-72403052-1	chr11	72402552	72403552	+	548.0	f1_balb.idr	exon (NM_177776, exon 3 of 8)	exon (NM_177776, exon 3 of 8)	8661.0	NM_177776	276829.0	Mm.46732	NM_177776	ENSMUSG00000045667	Smtnl2	D130058I21Rik	smoothelin-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-103871906-1	chr3	103871406	103872406	+	548.0	f0_c57.idr	intron (NR_104070, intron 3 of 22)	(CAAA)n|Simple_repeat|Simple_repeat	11629.0	NM_008979	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	23.0	81.0	39.5	35.5	35.0	22.0
Merged-chr15-93253442-2	chr15	93252942	93253942	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033275, intron 4 of 7)	intron (NM_001033275, intron 4 of 7)	21737.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52159272-2	chr6	52158772	52159772	+	547.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311118)	promoter-TSS (NM_001311118)	748.0	NR_131181	105242658.0	Mm.372521	NR_131181	ENSMUSG00000087658	Hotairm1	Gm15051|Hoxaas1	Hoxa transcript antisense RNA, myeloid-specific 1	ncRNA	1.0	14.5	12.0	1.0	7.0	5.5
Merged-chr5-21737861-2	chr5	21737361	21738361	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028431, intron 1 of 12)	intron (NM_028431, intron 1 of 12)	701.0	NM_028431	73078.0	Mm.301655	NM_028431	ENSMUSG00000029017	Pmpcb	3110004O18Rik|MPP11|MPPB|MPPP52	peptidase (mitochondrial processing) beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-112257722-2	chr2	112257222	112258222	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172521, intron 1 of 6)	intron (NM_172521, intron 1 of 6)	1569.0	NM_172521	213765.0	Mm.78965	NM_172521	ENSMUSG00000041358	Nutm1	4932438M10|Nut	NUT midline carcinoma, family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-18707133-2	chr15	18706633	18707633	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERVK9C_I-int|LTR|ERVK	-111814.0	NM_001316758	320873.0	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-54041075-2	chr19	54040575	54041575	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4107.0	NM_007417	11551.0	Mm.235195	NM_007417	ENSMUSG00000033717	Adra2a	AW122659|Adra-2|Adra-2a|alpha(2A)AR|alpha2-C10|alpha2A|alpha2A-AR	adrenergic receptor, alpha 2a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-36107412-2	chr1	36106912	36107912	+	547.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_015818)	TTS (NM_015818)	36901.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43239986-2	chr4	43239486	43240486	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081413, intron 19 of 39)	intron (NM_001081413, intron 19 of 39)	-27173.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-60361234-2	chr19	60360734	60361734	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	107070.0	NM_201615	226278.0	Mm.377241	NM_201615	ENSMUSG00000045052	Prlhr	Gm339|Gpr10|Gr3|Prrpr	prolactin releasing hormone receptor	protein-coding	4.0	0.0	0.0	0.0	0.5	4.5
Merged-chr5-121354195-2	chr5	121353695	121354695	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181421, intron 64 of 75)	intron (NM_181421, intron 64 of 75)	31214.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10788369-2	chr16	10787869	10788869	+	547.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013694, exon 1 of 2)	exon (NM_013694, exon 1 of 2)	286.0	NM_013694	21959.0	Mm.206798	NM_013694	ENSMUSG00000043050	Tnp2	TP2|Tp-2	transition protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101415744-2	chr7	101415244	101416244	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5947.0	NM_001008548	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46147109-2	chr18	46146609	46147609	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51709.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	0.0	16.5	4.5	1.0	6.0	4.0
Merged-chr4-16164815-2	chr4	16164315	16165315	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045765, intron 1 of 6)	intron (NR_045765, intron 1 of 6)	705.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-142164465-2	chr6	142163965	142164965	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023718, intron 1 of 14)	MTD|LTR|ERVL-MaLR	21684.0	NM_023718	28254.0	Mm.38953	NM_023718	ENSMUSG00000079262	Slco1a6	4930422F19Rik|AI790453|Oatp-5|Oatp5|Slc21a13	solute carrier organic anion transporter family, member 1a6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102012016-2	chr7	102011516	102012516	+	547.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133947, exon 20 of 25)	exon (NM_133947, exon 20 of 25)	6139.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	2.5	14.5	11.5	2.5	18.0	18.5
Merged-chr1-65091775-2	chr1	65091275	65092275	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9485.0	NM_144761	12965.0	Mm.440053	NM_144761	ENSMUSG00000073658	Crygb	Cryg-3|DGcry-3|Nop	crystallin, gamma B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128769481-2	chr6	128768981	128769981	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19160.0	NM_001159904	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63264589-2	chr14	63264089	63265089	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19318.0	NM_001310610	14463.0	Mm.247669	NM_008092	ENSMUSG00000021944	Gata4	Gata-4	GATA binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-26236595-2	chr17	26236095	26237095	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	B1_Mm|SINE|Alu	7647.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	36.0	116.0	86.5	52.5	90.0	74.0
Merged-chr9-22073023-2	chr9	22072523	22073523	+	547.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001253898, exon 7 of 8)	exon (NM_001253898, exon 7 of 8)	-1647.0	NM_001310759	319601.0	Mm.347707	NM_177318	ENSMUSG00000038895	Zfp653	E430039K05Rik|Znf653	zinc finger protein 653	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69012036-2	chr11	69011536	69012536	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19|LTR|ERVK	-3576.0	NM_001159519	237823.0	Mm.340288	NM_001159519	ENSMUSG00000020899	Pfas	4432409B16Rik|FGAMS|FGAR-AT|FGARAT|Gm18|PURL|Sofa	phosphoribosylformylglycinamidine synthase (FGAR amidotransferase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99795635-2	chr12	99795135	99796135	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030172, intron 5 of 5)	intron (NM_030172, intron 5 of 5)	87807.0	NM_030172	78767.0	Mm.235920	NM_030172	ENSMUSG00000021176	Efcab11	2610021K21Rik|2610110A13Rik	EF-hand calcium binding domain 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-37440557-2	chr6	37440057	37441057	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	1591.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-105738395-2	chr7	105737895	105738895	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161724, intron 2 of 12)	intron (NM_001161724, intron 2 of 12)	-1010.0	NM_133951	101867.0	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-86686886-2	chr18	86686386	86687386	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-24175.0	NM_001302356	12405.0	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166062672-2	chr2	166062172	166063172	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 17 of 22)	intron (NM_008679, intron 17 of 22)	70035.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3956240-2	chr8	3955740	3956740	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9377.0	NM_130903	170776.0	Mm.215729	NM_130903	ENSMUSG00000040165	Cd209c	SIGNR2|mSIGNR2	CD209c antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100373506-2	chr11	100373006	100374006	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010593, intron 11 of 13)	intron (NM_010593, intron 11 of 13)	-17365.0	NM_010404	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-90272115-2	chr1	90271615	90272615	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68135.0	NM_007722	12778.0	Mm.6522	NM_007722	ENSMUSG00000044337	Ackr3	AW541270|CXC-R7|CXCR-7|Cmkor1|Cxcr7|RDC-1|Rdc1	atypical chemokine receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114931556-2	chr5	114931057	114932057	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359946, intron 2 of 4)	MTC|LTR|ERVL-MaLR	8317.0	NM_001359945	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0.0	0.5	5.5	3.0	3.0	0.0
Merged-chr7-98430888-2	chr7	98430388	98431388	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9528.0	NM_001130693	14918.0	Mm.389928	NM_001034890	ENSMUSG00000074003	Gucy2d	-	guanylate cyclase 2d	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr1-165648691-2	chr1	165648191	165649191	+	547.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178593)	TTS (NM_178593)	-14150.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102236307-2	chr15	102235807	102236807	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042727, intron 7 of 7)	intron (NM_001042727, intron 7 of 7)	-4372.0	NM_013566	16421.0	Mm.58	NM_013566	ENSMUSG00000001281	Itgb7	Ly69	integrin beta 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-24833369-2	chr13	24832869	24833869	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019551, intron 2 of 6)	intron (NM_019551, intron 2 of 6)	1710.0	NM_019551	56196.0	Mm.427162	NM_019551	ENSMUSG00000035958	Tdp2	D13Ertd656e|Ttrap	tyrosyl-DNA phosphodiesterase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-36723267-2	chr5	36722767	36723767	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25412.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	0.5	0.0	0.0	0.0	1.0	0.5
Merged-chr10-61418975-2	chr10	61418475	61419475	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013611, intron 1 of 2)	intron (NM_013611, intron 1 of 2)	1003.0	NM_013611	18119.0	Mm.57195	NM_013611	ENSMUSG00000037171	Nodal	Tg.413d	nodal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-115066546-2	chr13	115066046	115067046	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033228, intron 1 of 28)	L1MB5|LINE|L1	23612.0	NM_134058	105083.0	Mm.486295	NM_134058	ENSMUSG00000042275	Pelo	AA409897|AI852218	pelota mRNA surveillance and ribosome rescue factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4151535-2	chr19	4151035	4152035	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011778, intron 7 of 10)	intron (NM_011778, intron 7 of 10)	2872.0	NM_011778	23789.0	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-102072830-2	chr5	102072330	102073330	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2909.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-18098314-2	chr4	18097797	18098797	+	547.5	f0_balb.idr|f1_balb.idr	intron (NM_019724, intron 7 of 9)	intron (NM_019724, intron 7 of 9)	244839.0	NM_019724	17389.0	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT-MMP 3|MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding	5.0	2.0	0.0	2.0	2.0	0.0
Merged-chr12-85629777-2	chr12	85629277	85630277	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 2 of 3)	intron (NM_001205053, intron 2 of 3)	29759.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31572065-2	chr2	31571565	31572565	+	547.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033389)	promoter-TSS (NM_001033389)	-586.0	NM_001033389	320267.0	Mm.207261	NM_001033389	ENSMUSG00000026843	Fubp3	A330051M14Rik|AV006371|FBP3|Marta2	far upstream element (FUSE) binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127816166-2	chr7	127815666	127816666	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024414, intron 1 of 9)	intron (NM_024414, intron 1 of 9)	8365.0	NM_024414	56216.0	Mm.439759	NM_024414	ENSMUSG00000030806	Stx1b	Stx1b2|Stx1bl|Syn1b	syntaxin 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-142967369-2	chr2	142966869	142967869	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64404.0	NR_131921	75053.0	Mm.72638	NR_131921	ENSMUSG00000086504	Kif16bos	4930511F01Rik	kinesin family member 16B, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-52313284-2	chr14	52312784	52313784	+	547.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_015772, exon 2 of 2)	exon (NM_015772, exon 2 of 2)	3039.0	NM_001244916	50524.0	Mm.39487	NM_015772	ENSMUSG00000049532	Sall2	AI225809|AW559097|Msal-2|Sal-2|mKIAA0360|p150(Sal2)	spalt like transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	3.0	0.0
Merged-chr12-85573112-2	chr12	85572612	85573612	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25993.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46800715-2	chr18	46800215	46801215	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-49324.0	NM_029008	74574.0	Mm.26379	NM_029008	ENSMUSG00000024481	Lvrn	4833403I15Rik|APQ|Aqpep	laeverin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-38221828-2	chr3	38221328	38222328	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13709.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-55019293-2	chr6	55018793	55019793	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18708.0	NM_180678	353172.0	Mm.250004	NM_180678	ENSMUSG00000029777	Gars	GENA202|Gena201|Nmf249|Sgrp23	glycyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88439939-2	chr10	88439439	88440439	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004164, intron 18 of 20)	intron (NM_001004164, intron 18 of 20)	-19648.0	NM_011517	20962.0	Mm.297977	NM_011517	ENSMUSG00000020059	Sycp3	Cor1|Scp3	synaptonemal complex protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-33126930-2	chr1	33126430	33127430	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME2|LINE|L1	542864.0	NM_008922	19076.0	Mm.27705	NM_008922	ENSMUSG00000026134	Prim2	AI323589	DNA primase, p58 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-58998058-2	chr13	58997558	58998558	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	URR1B|DNA|hAT-Charlie	190361.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	15.5	20.0	14.5	6.0	14.5	19.0
Merged-chr19-31765076-2	chr19	31764576	31765576	+	547.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013833)	promoter-TSS (NM_001013833)	-43.0	NM_001013833	19091.0	Mm.381170	NM_011160	ENSMUSG00000052920	Prkg1	AW125416|CGKI|Gm19690|Prkg1b|Prkgr1b	protein kinase, cGMP-dependent, type I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-108985372-2	chr9	108984872	108985872	+	547.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145077)	promoter-TSS (NM_145077)	-791.0	NM_145077	171530.0	Mm.388865	NM_145077	ENSMUSG00000049699	Ucn2	Ucn II|Ucn-2|ucn-II	urocortin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-49348612-2	chr2	49348112	49349112	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102712.0	NM_001290656	109241.0	Mm.440436	NM_029924	ENSMUSG00000036792	Mbd5	9430004D19Rik|AA536666|AI426407|C030040A15Rik|Gm1630	methyl-CpG binding domain protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-53332303-2	chr11	53331803	53332803	+	547.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026479, exon 4 of 4)	exon (NM_026479, exon 4 of 4)	7614.0	NM_026479	67966.0	Mm.288072	NM_026479	ENSMUSG00000018239	Zcchc10	2410141K03Rik|AA675321|D11Ertd416e	zinc finger, CCHC domain containing 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-43113896-2	chr15	43113396	43114396	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357956, intron 2 of 5)	intron (NM_001357956, intron 2 of 5)	56922.0	NM_001357957	239405.0	Mm.193274	NM_172815	ENSMUSG00000051920	Rspo2	2610028F08Rik|AA673245|D430027K22|ftls	R-spondin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60716569-2	chr13	60716069	60717069	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	intron (NM_134062, intron 3 of 26)	69795.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	4.5	0.0	6.0	4.5	0.0	6.0
Merged-chr8-84667229-2	chr8	84666729	84667729	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-4377.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr17-50884407-2	chr17	50883907	50884907	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 13 of 21)	RMER19C|LTR|ERVK	185726.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	5.0	0.0	1.5	2.5	0.0	1.5
Merged-chr1-112389133-2	chr1	112388633	112389633	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-524215.0	NM_001081316	319901.0	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35278977-2	chr17	35278477	35279477	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15854.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	0.0	1.5	0.0	0.0	0.0	0.0
Merged-chr8-71545709-2	chr8	71545229	71546229	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028617, intron 5 of 8)	intron (NM_028617, intron 5 of 8)	2799.0	NM_028617	73711.0	Mm.307770	NM_028617	ENSMUSG00000031813	Mvb12a	1110012M11Rik|Fam125a	multivesicular body subunit 12A	protein-coding	3.5	0.0	0.5	17.0	0.0	0.0
Merged-chr19-4118477-2	chr19	4117977	4118977	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016666, intron 2 of 6)	intron (NM_016666, intron 2 of 6)	3098.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-148159215-2	chr4	148158715	148159715	+	547.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104375)	promoter-TSS (NR_104375)	374.0	NM_001161851	230903.0	Mm.220327	NM_173401	ENSMUSG00000029001	Fbxo44	5730411K09|AV001623|FBG3|FBX30|Fbx6a|Fbxo6a	F-box protein 44	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-13569322-2	chr19	13568822	13569822	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur1|LINE|L1	-15984.0	NM_146291	258288.0	Mm.451652	NM_146291	ENSMUSG00000096289	Olfr1484	MOR202-37	olfactory receptor 1484	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25759476-2	chr7	25758976	25759976	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 19 of 19)	MLT1F1|LTR|ERVL-MaLR	-4717.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-43487487-2	chr15	43486987	43487987	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025736, intron 1 of 10)	RLTR13B1|LTR|ERVK	10258.0	NM_025736	66736.0	Mm.244512	NM_025736	ENSMUSG00000022337	Emc2	4921531G14Rik|AV060620|AW209495|Ttc35	ER membrane protein complex subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81641079-2	chr10	81640579	81641579	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027480, intron 14 of 19)	intron (NM_027480, intron 14 of 19)	-7990.0	NM_001142963	100233208.0	Mm.327168	NM_001142963	ENSMUSG00000096856	Gm10778	-	predicted gene 10778	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-92288191-2	chr4	92287691	92288691	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-140970.0	NM_027034	69314.0	Mm.55891	NM_027034	ENSMUSG00000028533	Izumo3	1700011H22Rik	IZUMO family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-9532745-2	chr16	9532245	9533245	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	459788.0	NM_008170	14811.0	Mm.2953	NM_008170	ENSMUSG00000059003	Grin2a	GluN2A|GluRepsilon1|NMDAR2A|NR2A	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67133094-2	chr18	67132594	67133594	+	547.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010307)	promoter-TSS (NM_010307)	-466.0	NM_010307	14680.0	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding	0.0	3.0	0.0	0.0	0.0	0.0
Merged-chr9-54605194-2	chr9	54604694	54605694	+	547.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029573)	TTS (NM_029573)	18683.0	NM_029573	67834.0	Mm.279195	NM_029573	ENSMUSG00000032279	Idh3a	1110003P10Rik|1500012E04Rik|AA407078|AI316514	isocitrate dehydrogenase 3 (NAD+) alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142473450-2	chr3	142472950	142473950	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TGAA)n|Simple_repeat|Simple_repeat	-23484.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-124274925-2	chr6	124274425	124275425	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29726.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-121190609-2	chr5	121190109	121191109	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011202, intron 1 of 15)	intron (NM_011202, intron 1 of 15)	788.0	NM_001109992	19247.0	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	0.0	6.0	4.5	0.0	6.0	5.5
Merged-chr13-116317426-2	chr13	116316926	116317926	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7738.0	NM_021459	16392.0	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-9658878-2	chr3	9658378	9659378	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A|LTR|ERVK	-48793.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37144415-2	chr9	37143915	37144915	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 1 of 12)	intron (NM_001029838, intron 1 of 12)	2907.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-88627966-2	chr10	88627466	88628466	+	547.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-22814.0	NM_175418	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-84706701-1	chr12	84706201	84707201	+	547.0	f0_balb.idr	Intergenic	Intergenic	-7894.0	NM_001033334	627191.0	Mm.152484	NM_001033334	ENSMUSG00000071234	Syndig1l	DSPC1|Gm261|SynDIG2|Tmem90a	synapse differentiation inducing 1 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16827433-1	chr7	16826933	16827933	+	547.0	f1_balb.idr	intron (NM_001039878, intron 5 of 17)	L2|LINE|L2	-10701.0	NM_173430	243853.0	Mm.39703	NM_173430	ENSMUSG00000048920	Fkrp	A830029B19Rik|AI842067|AI847300|LGMD1I|MDC1C	fukutin related protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-72380991-1	chr1	72380491	72381491	+	547.0	f0_balb.idr	intron (NM_001357519, intron 16 of 20)	C-rich|Low_complexity|Low_complexity	73570.0	NM_001357519	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131071714-1	chr1	131071214	131072214	+	547.0	f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	26129.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	1.5	5.5	4.5	1.5	5.5	4.5
Merged-chr13-119426687-1	chr13	119426187	119427187	+	547.0	f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1913.0	NM_001079849	218693.0	Mm.490243	NM_145457	ENSMUSG00000025451	Paip1	PAIP-1	polyadenylate binding protein-interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114372311-1	chr5	114371811	114372811	+	547.0	f1_c57bl6.idr	intron (NM_001159941, intron 2 of 6)	intron (NM_001159941, intron 2 of 6)	8194.0	NM_001159941	330171.0	Mm.238285	NM_026145	ENSMUSG00000001098	Kctd10	AW536343|C87062|mBACURD3	potassium channel tetramerisation domain containing 10	protein-coding	0.5	2.0	7.5	2.0	1.5	2.0
Merged-chr16-94628148-1	chr16	94627648	94628648	+	547.0	f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	intron (NM_001113389, intron 2 of 11)	16729.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-21568057-1	chr5	21567557	21568557	+	547.0	f0_balb.idr	intron (NM_028977, intron 2 of 3)	intron (NM_028977, intron 2 of 3)	24530.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-113565269-2	chr11	113564769	113565769	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027216, intron 1 of 9)	intron (NM_027216, intron 1 of 9)	546.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-24717689-1	chr19	24717189	24718189	+	547.0	f1_c57bl6.idr	intron (NM_175013, intron 9 of 10)	RMER1A|Other|Other	43681.0	NM_183160	226040.0	Mm.391170	NM_183160	ENSMUSG00000048572	Tmem252	E030010A14Rik	transmembrane protein 252	protein-coding	0.0	4.5	3.5	0.0	2.0	0.5
Merged-chr2-32154826-2	chr2	32154326	32155326	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172661, intron 1 of 29)	intron (NM_172661, intron 1 of 29)	3678.0	NM_001159634	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-4661446-1	chr13	4660946	4661946	+	547.0	f1_balb.idr	Intergenic	RMER17A|LTR|ERVK	-52282.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	1.0	0.5	0.0	0.0	0.0	0.0
Merged-chr9-96331420-1	chr9	96330920	96331920	+	547.0	f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	32295.0	NM_001357213	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	2.5	1.0	0.0	1.0	1.0	3.0
Merged-chr8-119785933-1	chr8	119785433	119786433	+	547.0	f1_balb.idr	Intergenic	Intergenic	-7517.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70649492-2	chr11	70648992	70649992	+	547.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027445, exon 4 of 9)	exon (NM_027445, exon 4 of 9)	2205.0	NM_027445	70510.0	Mm.261818	NM_027445	ENSMUSG00000040746	Rnf167	0610010G05Rik|5730408C10Rik|AU019305|AV328608	ring finger protein 167	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-75199840-2	chr16	75199340	75200340	+	547.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107070.0	NM_001358492	268902.0	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-113507158-1	chr13	113506658	113507658	+	547.0	f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-4314.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-21929668-1	chr4	21929168	21930168	+	547.0	f1_c57bl6.idr	Intergenic	Intergenic	-1658.0	NM_175234	76132.0	Mm.159689	NM_175234	ENSMUSG00000028246	Faxc	6230409E13Rik|AW742931	failed axon connections homolog	protein-coding	0.0	0.0	1.0	1.0	0.0	2.0
Merged-chr4-6405800-1	chr4	6405300	6406300	+	547.0	f1_balb.idr	intron (NM_010945, intron 27 of 30)	Lx10|LINE|L1	40120.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-167287291-1	chr1	167286791	167287791	+	547.0	f1_c57bl6.idr	Intergenic	Intergenic	-2164.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-80290329-1	chr11	80289829	80290829	+	547.0	f1_balb.idr	Intergenic	Intergenic	-10583.0	NM_139228	246104.0	Mm.194148	NM_139228	ENSMUSG00000017692	Rhbdl3	AI847581|Rhbdl4|Rhomr1|Vrho	rhomboid like 3	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr9-47743105-1	chr9	47742605	47743605	+	547.0	f1_balb.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	75103.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	105.0	193.0	145.5	116.0	230.5	219.5
Merged-chr15-78341187-1	chr15	78340687	78341687	+	547.0	f1_balb.idr	intron (NM_001358854, intron 7 of 14)	intron (NM_001358854, intron 7 of 14)	-7412.0	NR_106138	102466845.0		NR_106138	ENSMUSG00000099059	Mir7676-2	Gm27790|mmu-mir-7676-2	microRNA 7676-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-78900190-1	chr8	78899690	78900690	+	547.0	f0_c57.idr	Intergenic	Intergenic	-79038.0	NM_030145	78651.0	Mm.28694	NM_030145	ENSMUSG00000031683	Lsm6	1500031N17Rik|2410088K19Rik|AI747288	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-102286372-1	chr12	102285872	102286872	+	547.0	f1_balb.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	2731.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr8-104393814-1	chr8	104393314	104394314	+	547.0	f0_balb.idr	intron (NM_153582, intron 1 of 3)	intron (NM_153582, intron 1 of 3)	1993.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-47732901-1	chr18	47732401	47733401	+	547.0	f0_balb.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	56632.0	NR_152200	100042982.0	Mm.125235	NR_152200		Gm4146	Gm45939	predicted gene 4146	ncRNA	3.0	0.0	1.0	2.0	6.5	0.0
Merged-chr19-27416635-1	chr19	27416135	27417135	+	547.0	f1_c57bl6.idr	intron (NM_177474, intron 11 of 17)	intron (NM_177474, intron 11 of 17)	13273.0	NM_177474	52874.0	Mm.261027	NM_177474	ENSMUSG00000041360	Pum3	1110069H02Rik|AA675048|D19Bwg1357e	pumilio RNA-binding family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-99219962-2	chr5	99219463	99220463	+	547.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 13 of 13)	PB1D10|SINE|Alu	32964.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-99560898-1	chr10	99560398	99561398	+	547.0	f1_c57bl6.idr	Intergenic	Intergenic	-48273.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-35821661-1	chr12	35821161	35822161	+	547.0	f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-103960.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	1.0	0.0	0.0	0.0	0.0	1.5
Merged-chr7-143067895-2	chr7	143067395	143068395	+	547.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133655)	TTS (NM_133655)	-1473.0	NM_020285	56844.0	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-22815632-2	chr4	22815132	22816132	+	547.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	325084.0	NR_131335	105500046.0		NR_131335	ENSMUSG00000107859	Gm30731	Pnky|lnc-pou3f2	predicted gene, 30731	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37105151-1	chr13	37104651	37105651	+	547.0	f0_balb.idr	Intergenic	Intergenic	-54907.0	NM_001166391	74145.0	Mm.235105	NM_028784	ENSMUSG00000039109	F13a1	1200014I03Rik|AI462306|F13a	coagulation factor XIII, A1 subunit	protein-coding	0.0	0.0	0.0	3.0	2.0	5.0
Merged-chr18-4635601-1	chr18	4635101	4636101	+	547.0	f1_c57bl6.idr	intron (NM_001081963, intron 1 of 3)	intron (NM_001081963, intron 1 of 3)	672.0	NM_001081963	240185.0	Mm.33179	NM_001081963	ENSMUSG00000033960	Jcad	1110056P05Rik|9430020K01Rik|Gm328|mKIAA1462	junctional cadherin 5 associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-29780049-2	chr11	29779549	29780549	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 26 of 41)	intron (NM_146016, intron 26 of 41)	45619.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25025779-2	chr7	25025279	25026279	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360067, intron 12 of 19)	B4|SINE|B4	-19842.0	NM_001290469	232975.0	Mm.44101	NM_144921	ENSMUSG00000040907	Atp1a3	Atpa-2	ATPase, Na+/K+ transporting, alpha 3 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137295966-1	chr5	137295466	137296466	+	547.0	f1_c57bl6.idr	TTS (NM_027356)	TTS (NM_027356)	722.0	NR_106003	102465627.0		NR_106003	ENSMUSG00000098624	Mir7036	Gm27973|mmu-mir-7036|mmu-mir-7036a	microRNA 7036	ncRNA	1.0	1.5	0.5	0.0	0.5	0.0
Merged-chr7-30418585-1	chr7	30418085	30419085	+	547.0	f1_c57bl6.idr	intron (NM_011827, intron 2 of 3)	intron (NM_011827, intron 2 of 3)	1269.0	NM_011827	23900.0	Mm.379050	NM_011827	ENSMUSG00000064109	Hcst	DAP10|KAP10	hematopoietic cell signal transducer	protein-coding	66.5	142.5	114.5	58.5	112.0	77.0
Merged-chr9-90066884-1	chr9	90066384	90067384	+	547.0	f1_balb.idr	intron (NM_001312649, intron 6 of 10)	intron (NM_001312649, intron 6 of 10)	12617.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	3.5	15.0	7.5	2.5	13.5	7.0
Merged-chr1-139268018-1	chr1	139267518	139268518	+	547.0	f1_c57bl6.idr	intron (NM_133239, intron 5 of 11)	intron (NM_133239, intron 5 of 11)	109058.0	NM_133239	170788.0	Mm.95700	NM_133239	ENSMUSG00000063681	Crb1	7530426H14Rik|A930008G09Rik	crumbs family member 1, photoreceptor morphogenesis associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119642079-1	chr13	119641579	119642579	+	547.0	f1_c57bl6.idr	intron (NM_020279, intron 1 of 2)	MTA_Mm|LTR|ERVL-MaLR	18260.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-18922906-1	chr7	18922406	18923406	+	547.0	f1_c57bl6.idr	Intergenic	Intergenic	-2982.0	NM_001029877	384569.0	Mm.262724	NM_001029877	ENSMUSG00000030411	Nova2	Gm1424	neuro-oncological ventral antigen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126751721-2	chr7	126751221	126752221	+	547.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4b|LINE|L1	-7905.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-35047174-1	chr10	35046674	35047674	+	547.0	f1_balb.idr	Intergenic	L1_Mus2|LINE|L1	563774.0	NM_010237	14302.0	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43634945-2	chr7	43634445	43635445	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028236, intron 1 of 5)	intron (NM_028236, intron 1 of 5)	206.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-102624719-1	chr9	102624219	102625219	+	547.0	f1_c57bl6.idr	intron (NM_001081122, intron 1 of 16)	intron (NM_001081122, intron 1 of 16)	1405.0	NM_001301689	28135.0	Mm.38910	NM_001081122	ENSMUSG00000032534	Cep63	4921501M07|AL450317.13gm1|AW107703|CD20R|D9Mgc41|D9Mgc48e|ET2	centrosomal protein 63	protein-coding	5.0	18.0	5.0	16.0	17.0	7.0
Merged-chr15-86283323-1	chr15	86282823	86283823	+	547.0	f0_balb.idr	intron (NM_001358062, intron 1 of 9)	intron (NM_001358062, intron 1 of 9)	5648.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155070531-2	chr4	155070031	155071031	+	547.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001042407, exon 4 of 6)	exon (NM_001042407, exon 4 of 6)	3501.0	NM_001042407	668173.0	Mm.133114	NM_001042407	ENSMUSG00000029047	Pex10	AV128229|Gm142	peroxisomal biogenesis factor 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr10-66811059-2	chr10	66810559	66811559	+	547.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109325.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-6349427-1	chr15	6348927	6349927	+	547.0	f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	-37321.0	NM_023118	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-65429125-1	chr18	65428625	65429625	+	547.0	f1_balb.idr	intron (NR_105742, intron 3 of 6)	PB1D10|SINE|Alu	-1872.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.0	0.0	0.0	0.0	0.5	2.0
Merged-chr19-55667972-1	chr19	55667472	55668472	+	547.0	f1_balb.idr	intron (NR_045318, intron 2 of 3)	Charlie4a|DNA|hAT-Charlie	34232.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-58496541-1	chr10	58496041	58497041	+	547.0	f1_c57bl6.idr	Intergenic	Intergenic	-1396.0	NM_001162956	76138.0	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-85038737-1	chr2	85038237	85039237	+	547.0	f1_c57bl6.idr	intron (NM_182990, intron 3 of 16)	intron (NM_182990, intron 3 of 16)	1286.0	NM_001136081	20833.0	Mm.219793	NM_182990	ENSMUSG00000027067	Ssrp1	C81323|Hmg1-rs1|Hmgi-rs3|Hmgox|T160	structure specific recognition protein 1	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr1-85258100-1	chr1	85257600	85258600	+	547.0	f1_balb.idr	intron (NM_175219, intron 3 of 7)	intron (NM_175219, intron 3 of 7)	12466.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97403874-2	chr11	97403374	97404374	+	547.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41323.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55388716-2	chr11	55388216	55389216	+	547.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	31364.0	NM_009242	20692.0	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-75980361-2	chr16	75979861	75980861	+	547.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-20423.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-11679780-1	chr11	11679280	11680280	+	547.0	f1_c57bl6.idr	Intergenic	L2|LINE|L2	-6145.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-84989168-2	chr15	84988655	84989655	+	547.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1184.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-37422035-1	chr9	37421535	37422535	+	547.0	f1_c57bl6.idr	intron (NM_001164767, intron 14 of 27)	intron (NM_001164767, intron 14 of 27)	11140.0	NM_001164767	19649.0	Mm.212826	NM_011248	ENSMUSG00000032128	Robo3	Rbig1|Rig-1|Rig1|Robo3a|Robo3b	roundabout guidance receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-85915034-2	chr6	85914534	85915534	+	547.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170488)	promoter-TSS (NM_001170488)	643.0	NM_023160	66116.0	Mm.13036	NM_023160	ENSMUSG00000057103	Nat8f1	1110002I11Rik|AI266962|Cml1	N-acetyltransferase 8 (GCN5-related) family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165702792-1	chr1	165702292	165703292	+	547.0	f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	5302.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-91949979-1	chr2	91949479	91950479	+	547.0	f1_c57bl6.idr	intron (NM_001166597, intron 1 of 31)	intron (NM_001166597, intron 1 of 31)	369.0	NM_001166597	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0.5	15.5	8.0	2.0	5.5	9.0
Merged-chr16-43640783-2	chr16	43640283	43641283	+	547.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_030576)	TTS (NR_030576)	128.0	NR_030576	100124467.0		NR_030576	ENSMUSG00000076372	Mir568	Mirn568|mmu-mir-568	microRNA 568	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-78320885-1	chr13	78320385	78321385	+	547.0	f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-122012.0	NM_010151	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-5222923-1	chr12	5222423	5223423	+	547.0	f1_c57bl6.idr	intron (NM_001164493, intron 2 of 13)	intron (NM_001164493, intron 2 of 13)	152759.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-115347244-1	chr5	115346744	115347744	+	547.0	f1_balb.idr	intron (NM_007748, intron 2 of 2)	B1F2|SINE|Alu	1711.0	NM_007748	12861.0	Mm.43415	NM_007748	ENSMUSG00000041697	Cox6a1	VIaL	cytochrome c oxidase subunit VIa polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13566566-2	chr8	13566066	13567066	+	547.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009025)	TTS (NM_009025)	-4105.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-123505461-1	chr3	123504961	123505961	+	547.0	f1_c57bl6.idr	exon (NM_008939, exon 10 of 11)	exon (NM_008939, exon 10 of 11)	2605.0	NR_028573	100306957.0	Mm.260791	NR_028573	ENSMUSG00000092730	Snora24	ACA24	small nucleolar RNA, H/ACA box 24	snoRNA	2.5	7.0	4.5	0.0	13.5	5.0
Merged-chr2-53072894-2	chr2	53072394	53073394	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 8 of 26)	intron (NM_172409, intron 8 of 26)	118293.0	NM_018785	56194.0	Mm.257474	NM_018785	ENSMUSG00000061136	Prpf40a	2810012K09Rik|FBP-11|FBP11|Fnbp11|Fnbp3	pre-mRNA processing factor 40A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-24105925-2	chr7	24105425	24106425	+	547.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001045486, exon 5 of 5)	exon (NM_001045486, exon 5 of 5)	-6395.0	NM_021307	57745.0	Mm.82678	NM_021307	ENSMUSG00000052675	Zfp112	Znf112|Znf228	zinc finger protein 112	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34448140-1	chr6	34447640	34448640	+	547.0	f1_balb.idr	Intergenic	Intergenic	-28216.0	NM_007563	12183.0	Mm.282863	NM_007563	ENSMUSG00000038871	Bpgm	AI323730|AL022789|C86192	2,3-bisphosphoglycerate mutase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27659951-1	chr3	27659451	27660451	+	547.0	f1_balb.idr	intron (NM_173182, intron 1 of 25)	B4A|SINE|B4	50501.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-133547612-1	chr3	133547112	133548112	+	547.0	f1_c57bl6.idr	Intergenic	Intergenic	-3222.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-19928405-2	chr15	19927905	19928905	+	547.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	738345.0	NM_022816	64833.0	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-35044250-1	chr9	35043750	35044750	+	547.0	f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-72478.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	7.0	1.5	1.0	7.5	0.0	1.5
Merged-chr10-42582006-1	chr10	42581506	42582506	+	547.0	f1_c57bl6.idr	intron (NM_152229, intron 1 of 8)	intron (NM_152229, intron 1 of 8)	1582.0	NM_152229	21907.0	Mm.287100	NM_152229	ENSMUSG00000019803	Nr2e1	Mtl1|Mtll|TLL|Tlx|XTLL|fierce|frc|tailless	nuclear receptor subfamily 2, group E, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118982028-1	chr10	118981528	118982528	+	547.0	f1_balb.idr	Intergenic	Intergenic	-54885.0	NR_110482	216377.0	Mm.208936	NR_110482	ENSMUSG00000112854	Gm38403	C230029M16	predicted gene, 38403	ncRNA	12.5	16.0	27.5	11.5	29.0	19.5
Merged-chr3-65187635-1	chr3	65187135	65188135	+	547.0	f1_balb.idr	promoter-TSS (NM_001289450)	promoter-TSS (NM_001289450)	-468.0	NM_001289450	16497.0	Mm.316402	NM_010597	ENSMUSG00000027827	Kcnab1	Akr8a8|Kvbeta1.1|mKv(beta)1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-117926800-1	chr6	117926300	117927300	+	547.0	f1_balb.idr	Intergenic	B2_Mm2|SINE|B2	9506.0	NM_001166427	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-77005961-2	chr16	77005461	77006461	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040573, intron 2 of 2)	MERVK26-int|LTR|ERVK	4920.0	NR_040573	76601.0	Mm.396217	NR_040573	ENSMUSG00000100857	1700041M19Rik	-	RIKEN cDNA 1700041M19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-101544971-1	chr7	101544471	101545471	+	547.0	f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	10831.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	5.5	3.5	0.0	0.0	0.0	3.5
Merged-chr11-51618733-2	chr11	51618233	51619233	+	547.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1040.0	NM_026631	52530.0	Mm.28203	NM_026631	ENSMUSG00000001056	Nhp2	2410130M07Rik|D11Ertd175e|Nola2	NHP2 ribonucleoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-20048650-1	chr13	20048150	20049150	+	547.0	f1_c57bl6.idr	Intergenic	Intergenic	-41857.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.0	3.5	0.5	0.0	1.5	0.0
Merged-chr4-85065476-1	chr4	85064976	85065976	+	547.0	f1_c57bl6.idr	intron (NM_175275, intron 16 of 25)	L1MDa|LINE|L1	-139980.0	NM_019535	20404.0	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr17-36869560-1	chr17	36869060	36870060	+	547.0	f1_balb.idr	promoter-TSS (NM_011280)	promoter-TSS (NM_011280)	-14.0	NM_011280	19824.0	Mm.299155	NM_011280	ENSMUSG00000073400	Trim10	AI324236|BB139825|Herf1|Rnf9	tripartite motif-containing 10	protein-coding	0.0	0.0	0.5	0.0	4.0	0.0
Merged-chr6-87385602-1	chr6	87385102	87386102	+	547.0	f1_c57bl6.idr	intron (NM_026860, intron 3 of 5)	intron (NM_026860, intron 3 of 5)	3333.0	NM_026860	68888.0	Mm.46387	NM_026860	ENSMUSG00000030048	Gkn3	1190003M12Rik	gastrokine 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-103593143-2	chr5	103592643	103593643	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011204, intron 45 of 47)	intron (NM_011204, intron 45 of 47)	36260.0	NM_029415	75750.0	Mm.7446	NM_029415	ENSMUSG00000029321	Slc10a6	8430417G17Rik|C78479|Soat	solute carrier family 10 (sodium/bile acid cotransporter family), member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119495343-1	chr11	119494843	119495843	+	547.0	f1_c57bl6.idr	intron (NM_001164636, intron 2 of 8)	intron (NM_001164636, intron 2 of 8)	3723.0	NM_177394	338371.0	Mm.271946	NM_177394	ENSMUSG00000039850	Endov	A730011L01Rik	endonuclease V	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60714992-1	chr13	60714492	60715492	+	547.0	f1_balb.idr	intron (NM_134062, intron 3 of 26)	intron (NM_134062, intron 3 of 26)	71372.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0.0	7.0	4.0	0.5	3.0	1.5
Merged-chr6-91441899-1	chr6	91441399	91442399	+	547.0	f1_balb.idr	TTS (NR_038153)	TTS (NR_038153)	912.0	NR_038153	69798.0	Mm.229265	NR_038153	ENSMUSG00000100680	1810044D09Rik	-	RIKEN cDNA 1810044D09 gene	ncRNA	0.0	1.5	8.5	0.5	0.0	3.0
Merged-chr18-46572185-2	chr18	46571685	46572685	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173394, intron 2 of 2)	intron (NM_173394, intron 2 of 2)	2348.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98891616-2	chr11	98891116	98892116	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_197940, intron 4 of 7)	intron (NM_197940, intron 4 of 7)	-16273.0	NM_001025779	23834.0	Mm.20912	NM_011799	ENSMUSG00000017499	Cdc6	CDC18L	cell division cycle 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-34837703-2	chr1	34837203	34838203	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160236, intron 1 of 6)	(TA)n|Simple_repeat|Simple_repeat	5347.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-3635491-2	chr7	3634991	3635991	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159714, intron 7 of 13)	MLT1B|LTR|ERVL-MaLR	5506.0	NM_027328	68988.0	Mm.246863	NM_027328	ENSMUSG00000008373	Prpf31	1500019O16Rik|2810404O06Rik|AW554706|PRP31|RP11	pre-mRNA processing factor 31	protein-coding	1.5	2.5	0.0	0.0	0.0	0.0
Merged-chr12-4621341-1	chr12	4620841	4621841	+	547.0	f1_balb.idr	intron (NM_001198969, intron 2 of 16)	L1_Mus2|LINE|L1	28333.0	NM_001198968	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-15098580-1	chr2	15098080	15099080	+	547.0	f0_balb.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	43218.0	NM_029466	75869.0	Mm.174068	NM_029466	ENSMUSG00000017418	Arl5b	4930587A11Rik|AW146430|Arl8	ADP-ribosylation factor-like 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66748602-2	chr15	66748101	66749101	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 34 of 47)	intron (NM_009375, intron 34 of 47)	77831.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	0.0	2.5	0.0	0.0	4.0	0.5
Merged-chr9-111049606-1	chr9	111049106	111050106	+	547.0	f1_balb.idr	Intergenic	RLTR31_Mur|LTR|ERVK	7638.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81150497-2	chr10	81149997	81150997	+	547.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010731, exon 3 of 3)	3' UTR (NM_010731, exon 3 of 3)	14226.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16727058-1	chr7	16726558	16727558	+	547.0	f1_balb.idr	TTS (NM_011927)	TTS (NM_011927)	5129.0	NM_011927	26368.0	Mm.27096	NM_011927	ENSMUSG00000007209	Ceacam9	AA410097|AW545709|Cea-5|Cea5|mmCGM8	carcinoembryonic antigen-related cell adhesion molecule 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-58991334-1	chr15	58990834	58991834	+	547.0	f0_balb.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	57524.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-44601262-1	chr13	44600762	44601762	+	547.0	f0_balb.idr	Intergenic	Intergenic	-129512.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr3-101551980-1	chr3	101551480	101552480	+	547.0	f1_c57bl6.idr	Intergenic	Intergenic	52727.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	1.0	3.5	3.5	0.0	1.5	0.0
Merged-chr18-84667713-1	chr18	84667213	84668213	+	547.0	f1_c57bl6.idr	3' UTR (NM_001289531, exon 11 of 11)	3' UTR (NM_001289531, exon 11 of 11)	14346.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120679658-1	chr8	120679158	120680158	+	547.0	f1_c57bl6.idr	Intergenic	Intergenic	11338.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-66212722-1	chr7	66212222	66213222	+	547.0	f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	103207.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114168831-1	chr11	114168331	114169331	+	547.0	f1_balb.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-29427.0	NR_045930	73536.0	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-72335419-1	chr13	72334919	72335919	+	547.0	f1_c57bl6.idr	Intergenic	Intergenic	293145.0	NR_030701	328287.0	Mm.235072	NR_030701		Gm20554	D430050G20	predicted gene, 20554	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73391128-2	chr7	73390628	73391628	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177740, intron 1 of 3)	intron (NM_177740, intron 1 of 3)	-15354.0	NR_040324	319783.0	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-13884763-1	chr10	13884263	13885263	+	547.0	f0_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	13483.0	NR_152745	102634635.0		NR_152745	ENSMUSG00000112172	Gm32172	-	predicted gene, 32172	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-126813222-1	chr10	126812722	126813722	+	547.0	f1_c57bl6.idr	Intergenic	Intergenic	-19512.0	NR_131015	75813.0	Mm.159583	NR_131015	ENSMUSG00000112832	4930484H19Rik	-	RIKEN cDNA 4930484H19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-67142381-1	chr6	67141881	67142881	+	547.0	f0_balb.idr	Intergenic	Intergenic	-104974.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-118111473-1	chr10	118110973	118111973	+	547.0	f1_c57bl6.idr	Intergenic	Intergenic	-30314.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-32536376-2	chr11	32535862	32536862	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	B4A|SINE|B4	3096.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	5.5	4.0	5.0	5.5	2.5	10.0
Merged-chr16-24698416-1	chr16	24697916	24698916	+	547.0	f1_c57bl6.idr	intron (NM_178665, intron 7 of 12)	Lx3C|LINE|L1	-23439.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.0	1.0	1.5	0.0	1.0	0.5
Merged-chr6-13330791-1	chr6	13330291	13331291	+	547.0	f1_balb.idr	Intergenic	L1Md_F|LINE|L1	-82546.0	NR_038149	69413.0	Mm.177847	NR_038149	ENSMUSG00000101894	1700016P04Rik	-	RIKEN cDNA 1700016P04 gene	ncRNA	1.5	0.5	0.0	0.0	1.0	1.0
Merged-chr15-78962614-1	chr15	78962114	78963114	+	547.0	f1_c57bl6.idr	intron (NM_001039156, intron 7 of 24)	intron (NM_001039156, intron 7 of 24)	14890.0	NM_001039155	110253.0	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112473994-1	chr12	112473494	112474494	+	547.0	f0_balb.idr	Intergenic	Intergenic	-15454.0	NM_177039	319942.0	Mm.185209	NM_177039	ENSMUSG00000043122	A530016L24Rik	Nrac	RIKEN cDNA A530016L24 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21871040-1	chr9	21870540	21871540	+	547.0	f1_c57bl6.idr	Intergenic	Intergenic	-18405.0	NM_177030	319899.0	Mm.128153	NM_177030	ENSMUSG00000032198	Dock6	2410095B20Rik|4931431C02Rik|C330023D02Rik|mKIAA1395	dedicator of cytokinesis 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-129916878-1	chr10	129916378	129917378	+	547.0	f1_balb.idr	Intergenic	L1_Mus4|LINE|L1	-4602.0	NM_146672	258667.0	Mm.377629	NM_146672	ENSMUSG00000063715	Olfr816	MOR113-1	olfactory receptor 816	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152427571-2	chr1	152427071	152428071	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177756, intron 1 of 11)	intron (NM_177756, intron 1 of 11)	27704.0	NM_177756	269132.0	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102982510-2	chr15	102982010	102983010	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008272, intron 2 of 2)	T-rich|Low_complexity|Low_complexity	-1447.0	NR_155438	102640931.0	Mm.385821	NR_155438		Gm36878	-	predicted gene, 36878	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-38095915-1	chr7	38095415	38096415	+	547.0	f1_c57bl6.idr	Intergenic	Intergenic	11575.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	8.5	6.5	3.5	0.0	0.5	3.5
Merged-chr2-180179923-1	chr2	180179423	180180423	+	547.0	f1_balb.idr	promoter-TSS (NR_105972)	promoter-TSS (NR_105972)	-100.0	NR_105972	102466785.0		NR_105972	ENSMUSG00000098735	Mir7005	Gm27835|mmu-mir-7005	microRNA 7005	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-23789046-2	chr5	23788546	23789546	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310467, intron 2 of 13)	intron (NM_001310467, intron 2 of 13)	1335.0	NM_001310467	72772.0	Mm.133300	NM_177323	ENSMUSG00000028999	Rint1	1500019C06Rik|2810450M21Rik|Rint-1	RAD50 interactor 1	protein-coding	4.5	7.5	3.5	6.0	7.0	2.5
Merged-chr10-62337958-1	chr10	62337458	62338458	+	547.0	f1_balb.idr	intron (NM_010438, intron 4 of 21)	(TTG)n|Simple_repeat|Simple_repeat	2463.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25140812-1	chr12	25140312	25141312	+	547.0	f1_balb.idr	Intergenic	MIRc|SINE|MIR	11638.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	4.0	2.0	0.0	0.0	8.0	2.0
Merged-chr11-99150599-2	chr11	99150099	99151099	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007719, intron 1 of 2)	intron (NM_007719, intron 1 of 2)	4478.0	NM_001301713	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-38228309-1	chr3	38227809	38228809	+	547.0	f1_balb.idr	Intergenic	B3|SINE|B2	-20190.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-121757552-1	chr9	121757052	121758052	+	547.0	f1_balb.idr	TTS (NM_010918)	TTS (NM_010918)	2391.0	NR_033503	320301.0	Mm.373883	NR_033503		E530011L22Rik	-	RIKEN cDNA E530011L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-104270158-1	chr9	104269658	104270658	+	547.0	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7228.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127293278-2	chr7	127292778	127293778	+	547.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4A|LINE|L1	-2982.0	NM_001253873	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127333619-1	chr7	127333119	127334119	+	547.0	f1_c57bl6.idr	3' UTR (NM_008400, exon 31 of 31)	3' UTR (NM_008400, exon 31 of 31)	11695.0	NM_146202	233890.0	Mm.23031	NM_146202	ENSMUSG00000047371	Zfp768	BC026432|Znf768	zinc finger protein 768	protein-coding	1.5	0.0	1.0	6.5	16.5	3.0
Merged-chr19-25056221-1	chr19	25055721	25056721	+	547.0	f1_c57bl6.idr	intron (NM_028785, intron 2 of 47)	B4|SINE|B4	56692.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	14.5	2.5	5.5	6.0	4.5	5.5
Merged-chr2-45009728-2	chr2	45009228	45010228	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 4 of 9)	intron (NM_001355291, intron 4 of 9)	13449.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-84105715-2	chr6	84105215	84106215	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 22 of 54)	CpG	86329.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35173898-1	chr7	35173398	35174398	+	547.0	f1_balb.idr	Intergenic	Intergenic	-12487.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	0.5	0.0	3.0	0.0	0.0	6.0
Merged-chr12-41149220-1	chr12	41148720	41149720	+	547.0	f0_balb.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	125130.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-148873944-2	chr2	148873482	148874482	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009976, intron 1 of 2)	intron (NM_009976, intron 1 of 2)	1530.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	6.0	16.5	17.5	3.5	12.5	10.5
Merged-chr7-135659771-1	chr7	135659271	135660271	+	547.0	f1_c57bl6.idr	intron (NM_001316681, intron 4 of 17)	intron (NM_001316681, intron 4 of 17)	-7457.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-59415936-2	chr16	59415436	59416436	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081190, intron 2 of 8)	MIRb|SINE|MIR	8554.0	NM_001081190	328699.0	Mm.451970	NM_001081190	ENSMUSG00000074991	Gabrr3	-	gamma-aminobutyric acid (GABA) receptor, rho 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-20589385-2	chr4	20588885	20589885	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172987, intron 1 of 4)	intron (NM_172987, intron 1 of 4)	189283.0	NM_001290410	269513.0	Mm.317473	NM_172987	ENSMUSG00000055761	Nkain3	C530048M05|E130310K16Rik	Na+/K+ transporting ATPase interacting 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101271147-1	chr15	101270647	101271647	+	547.0	f1_c57bl6.idr	intron (NM_010444, intron 2 of 6)	intron (NM_010444, intron 2 of 6)	4301.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-83328681-1	chr13	83328181	83329181	+	547.0	f1_balb.idr	Intergenic	Intergenic	-175353.0	NM_001347572	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-54832555-1	chr17	54832055	54833055	+	547.0	f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-462481.0	NR_045825	69418.0	Mm.391004	NR_045825	ENSMUSG00000099747	1700025K24Rik	-	RIKEN cDNA 1700025K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-20644897-1	chr18	20644397	20645397	+	547.0	f1_c57bl6.idr	intron (NR_155534, intron 1 of 2)	intron (NR_155534, intron 1 of 2)	-20353.0	NM_013697	22139.0	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	1.5	0.0	0.0	1.5	0.0	0.0
Merged-chr7-125563346-1	chr7	125562846	125563846	+	547.0	f1_balb.idr	intron (NM_001008700, intron 1 of 10)	intron (NM_001008700, intron 1 of 10)	11064.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	3.5	12.5	4.5	10.0	12.5	3.0
Merged-chr11-103209951-1	chr11	103209451	103210451	+	547.0	f1_c57bl6.idr	intron (NM_177801, intron 2 of 4)	intron (NM_177801, intron 2 of 4)	-1403.0	NM_001254724	69441.0	Mm.380648	NM_027082	ENSMUSG00000020940	1700023F06Rik	-	RIKEN cDNA 1700023F06 gene	protein-coding	0.0	0.0	2.5	0.0	4.5	0.0
Merged-chr19-5423147-2	chr19	5422647	5423647	+	547.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_015545)	TTS (NR_015545)	1832.0	NM_024176	66556.0	Mm.275446	NM_024176	ENSMUSG00000024914	Drap1	2310074H19Rik|NC2-alpha	Dr1 associated protein 1 (negative cofactor 2 alpha)	protein-coding	7.5	6.5	0.0	0.0	4.0	4.0
Merged-chr9-65584313-1	chr9	65583813	65584813	+	547.0	f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-2847.0	NR_151702	208084.0	Mm.211032	NM_172453	ENSMUSG00000041064	Pif1	4631410M14|AI449441	PIF1 5'-to-3' DNA helicase	protein-coding	1.0	0.0	0.0	0.0	3.0	3.0
Merged-chr4-130924238-1	chr4	130923738	130924738	+	547.0	f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	10904.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-145274771-1	chr6	145274271	145275271	+	547.0	f1_c57bl6.idr	Intergenic	Intergenic	24219.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	26.0	70.0	38.0	16.5	47.5	33.5
Merged-chr16-65554543-1	chr16	65554043	65555043	+	547.0	f1_c57bl6.idr	intron (NM_026879, intron 1 of 5)	intron (NM_026879, intron 1 of 5)	8154.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-41194890-1	chr12	41194390	41195390	+	547.0	f0_balb.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	170800.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-123344663-2	chr7	123344163	123345163	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	25252.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-20740584-1	chr5	20740084	20741084	+	547.0	f1_c57bl6.idr	Intergenic	Intergenic	141540.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120273748-2	chr14	120273248	120274248	+	547.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1921.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-177014976-2	chr1	177014476	177015476	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 18 of 18)	intron (NM_001357390, intron 18 of 18)	-178843.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-35102244-1	chr8	35101744	35102744	+	547.0	f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-136554.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	1.0	0.0	2.0	2.0	0.5	1.5
Merged-chr7-80791970-1	chr7	80791470	80792470	+	547.0	f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	11361.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	1.5	24.5	5.0	1.5	19.0	4.5
Merged-chr12-52305815-1	chr12	52305315	52306315	+	547.0	f1_balb.idr	exon (NM_029760, exon 10 of 11)	exon (NM_029760, exon 10 of 11)	174794.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129986284-1	chr4	129985784	129986784	+	547.0	f1_c57bl6.idr	intron (NM_001199696, intron 1 of 28)	CpG	1206.0	NM_173071	230775.0	Mm.262241	NM_173071	ENSMUSG00000028782	Adgrb2	Bai2	adhesion G protein-coupled receptor B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-4155359-2	chr12	4154859	4155859	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 2 of 21)	MER45B|DNA|hAT-Tip100	21206.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-35794990-1	chr5	35794490	35795490	+	547.0	f1_balb.idr	intron (NM_177678, intron 1 of 19)	intron (NM_177678, intron 1 of 19)	37110.0	NM_001177698	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	0.0	0.0	0.0	1.5	3.5	0.0
Merged-chr12-80153123-1	chr12	80152623	80153623	+	547.0	f1_balb.idr	Intergenic	Intergenic	-20279.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr4-147433247-2	chr4	147432747	147433747	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	ID_B1|SINE|B4	-120030.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-54929483-2	chr8	54928983	54929983	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253754, intron 1 of 6)	RMER17A2|LTR|ERVK	-25245.0	NM_153581	234267.0	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-181327236-1	chr1	181326736	181327736	+	547.0	f1_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-25392.0	NM_001160212	72978.0	Mm.338083	NM_028408	ENSMUSG00000026514	Cnih3	2900075G08Rik|CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5712658-2	chr2	5712158	5713158	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	2104.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	17.0	16.0	19.5	22.0	18.0	13.5
Merged-chr11-86959113-1	chr11	86958613	86959613	+	547.0	f1_c57bl6.idr	intron (NM_001005341, intron 2 of 4)	intron (NM_001005341, intron 2 of 4)	34649.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93780799-2	chr2	93780299	93781299	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355076, intron 7 of 10)	intron (NM_001355076, intron 7 of 10)	41769.0	NM_010163	14043.0	Mm.4336	NM_010163	ENSMUSG00000027198	Ext2	AI893565	exostoses (multiple) 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3922197-1	chr19	3921697	3922697	+	547.0	f1_balb.idr	intron (NM_026316, intron 2 of 9)	B1_Mus1|SINE|Alu	7519.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84932494-2	chr18	84931994	84932994	+	547.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-2511.0	NM_015798	50764.0	Mm.28369	NM_015798	ENSMUSG00000034391	Fbxo15	AU019763|Fbx15|ecat3	F-box protein 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31432204-1	chr14	31431704	31432704	+	547.0	f1_balb.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	3896.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	2.0	11.5	3.5	2.0	11.5	3.0
Merged-chr17-84113192-2	chr17	84112692	84113692	+	547.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	34532.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-44981757-2	chr14	44981283	44982283	+	546.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6328.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150833264-2	chr2	150832777	150833777	+	546.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 12 of 12)	intron (NR_151505, intron 12 of 12)	9293.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-130520841-2	chr10	130520341	130521341	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL2|LINE|L1	-23462.0	NM_001103366	625131.0	Mm.469844	NM_001103366	ENSMUSG00000091511	Vmn2r87	EG625131	vomeronasal 2, receptor 87	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120090346-2	chr2	120089846	120090846	+	546.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133838, exon 6 of 6)	3' UTR (NM_133838, exon 6 of 6)	56913.0	NM_145378	211429.0	Mm.41467	NM_145378	ENSMUSG00000098488	Pla2g4b	A030011C02Rik|Gm1013|cPLA2-beta	phospholipase A2, group IVB (cytosolic)	protein-coding	1.0	0.0	1.5	0.0	0.0	1.0
Merged-chr16-91013147-2	chr16	91012647	91013647	+	546.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026110)	TTS (NM_026110)	-1839.0	NM_001164483	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191216662-2	chr1	191216162	191217162	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7792.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4456467-2	chr19	4455967	4456967	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134164, intron 4 of 7)	intron (NM_134164, intron 4 of 7)	16908.0	NR_045989	319314.0	Mm.393810	NR_045989	ENSMUSG00000087132	A930001C03Rik	-	RIKEN cDNA A930001C03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166776453-2	chr2	166775953	166776953	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17314.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115813588-2	chr6	115813088	115814088	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110506, intron 7 of 8)	ORR1E|LTR|ERVL-MaLR	-4845.0	NM_172086	19951.0	Mm.104368	NM_172086	ENSMUSG00000057841	Rpl32	AU020185|rpL32-3A	ribosomal protein L32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-50917270-2	chr18	50916770	50917770	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-200628.0	NM_001081224	71373.0	Mm.63546	NM_001081224	ENSMUSG00000073565	Prr16	5430406M13Rik|AI607429	proline rich 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78180596-2	chr11	78180096	78181096	+	546.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_207523)	TTS (NM_207523)	750.0	NR_037682	100529076.0		NR_037682		Snord42a	MBII-292|U42A	small nucleolar RNA, C/D box 42A	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64203334-2	chr5	64202834	64203834	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-27023.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72753782-2	chr6	72753282	72754282	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001079822, intron 3 of 12)	intron (NM_001079822, intron 3 of 12)	35263.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80105852-2	chr7	80105352	80106352	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173011, intron 1 of 10)	intron (NM_173011, intron 1 of 10)	9498.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	0.0	0.0	3.0	0.0	0.0	3.5
Merged-chr6-142507489-2	chr6	142506989	142507989	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008492, intron 1 of 7)	intron (NM_008492, intron 1 of 7)	468.0	NM_008492	16832.0	Mm.9745	NM_008492	ENSMUSG00000030246	Ldhb	AI790582|H-Ldh|LDH-B|LDH-H|Ldh-2|Ldh2	lactate dehydrogenase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152546420-2	chr1	152545920	152546920	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 8 of 17)	intron (NM_016846, intron 8 of 17)	78797.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-31235067-2	chr16	31234567	31235567	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33829.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	1.5	7.5	18.0	2.0	5.5	11.5
Merged-chr7-28439563-2	chr7	28439063	28440063	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290550, intron 1 of 5)	B1_Mus2|SINE|Alu	-1374.0	NM_001039192	63986.0	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5659636-2	chr17	5659136	5660136	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 2 of 8)	intron (NM_146073, intron 2 of 8)	-139021.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-116184974-2	chr9	116184450	116185450	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-4230.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	8.5	4.0	4.0	4.0	6.0	4.5
Merged-chr9-9990650-2	chr9	9990150	9991150	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033359, intron 5 of 20)	intron (NM_001033359, intron 5 of 20)	96219.0	NR_105745	102466147.0		NR_105745	ENSMUSG00000098408	Mir6237	Gm27411|mmu-mir-6237	microRNA 6237	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79684000-2	chr10	79683500	79684500	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359818, intron 1 of 4)	intron (NM_001359818, intron 1 of 4)	1805.0	NM_001359817	216150.0	Mm.21981	NM_177613	ENSMUSG00000020307	Cdc34	AI327276|E2-CDC34|UBE2R1	cell division cycle 34	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75904725-2	chr15	75904225	75905225	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029663, intron 2 of 9)	intron (NM_029663, intron 2 of 9)	4619.0	NM_001285433	66656.0	Mm.258927	NM_023240	ENSMUSG00000055762	Eef1d	EF-1-delta	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-91077432-2	chr1	91076932	91077932	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 4 of 22)	intron (NM_008515, intron 4 of 22)	23988.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55021405-2	chr11	55020905	55021905	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 2 of 24)	intron (NR_138556, intron 2 of 24)	12066.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-42548722-2	chr1	42548222	42549222	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	146103.0	NR_027826	66297.0	Mm.45203	NM_183252	ENSMUSG00000060424	Pantr1	2610017I09Rik|Pou3f3os|linc-Brn1a	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24828656-2	chr5	24828156	24829156	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053075, intron 1 of 7)	Lx9|LINE|L1	13705.0	NM_053075	19744.0	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147449272-2	chr4	147448772	147449772	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	-104005.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-136136250-1	chr1	136135750	136136750	+	546.5	f0_c57.idr	intron (NM_001039472, intron 1 of 34)	URR1B|DNA|hAT-Charlie	4860.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80921609-2	chr10	80921109	80922109	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3364.0	NM_010722	16907.0	Mm.7362	NM_010722	ENSMUSG00000062075	Lmnb2	-	lamin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10856829-2	chr19	10856329	10857329	+	546.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133804)	TTS (NM_133804)	12950.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52619167-2	chr3	52618667	52619667	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	102203.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	1.5	11.0	5.5	15.5	0.0	7.5
Merged-chr6-72110783-2	chr6	72110283	72111283	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	12157.0	NR_045163	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50236339-2	chr17	50235839	50236839	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2869.0	NR_131975	446210.0	Mm.378184	NM_001004437	ENSMUSG00000067103	AY702103	STDP2	cDNA sequence AY702103	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-93991057-2	chr13	93990557	93991557	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66739.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-43741542-2	chr10	43741042	43742042	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4616.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-100439687-2	chr3	100439187	100440187	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13282.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-89276748-1	chr4	89276248	89277248	+	546.5	f1_c57bl6.idr	exon (NM_009877, exon 2 of 3)	exon (NM_009877, exon 2 of 3)	5444.0	NM_001040654	12578.0	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin dependent kinase inhibitor 2A	protein-coding	0.0	5.5	4.0	0.0	0.0	2.0
Merged-chr4-3064823-2	chr4	3064323	3065323	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAGTA)n|Simple_repeat|Simple_repeat	-107260.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55900072-2	chr19	55899572	55900572	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142924, intron 1 of 11)	intron (NM_001142924, intron 1 of 11)	4751.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-31143354-2	chr2	31142854	31143854	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1346.0	NM_001038700	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180192018-2	chr1	180191527	180192527	+	546.5	f0_balb.idr|f0_c57.idr	intron (NM_023341, intron 1 of 14)	intron (NM_023341, intron 1 of 14)	1458.0	NM_001163290	67426.0	Mm.38330	NM_023341	ENSMUSG00000026489	Coq8a	4632432J16Rik|AI462003|Adck3|Cabc1|mKIAA0451	coenzyme Q8A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-73273199-2	chr2	73272699	73273699	+	546.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001005343, exon 2 of 2)	exon (NM_001005343, exon 2 of 2)	1273.0	NM_001005343	381373.0	Mm.330293	NM_001005343	ENSMUSG00000068859	Sp9	-	trans-acting transcription factor 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31037682-2	chr17	31037182	31038182	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20012.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	0.0	0.5	8.0	6.5	21.0	16.5
Merged-chr4-128961859-2	chr4	128961359	128962359	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172875, intron 2 of 10)	intron (NM_172875, intron 2 of 10)	596.0	NM_172875	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-30962875-2	chr17	30962375	30963375	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177465, intron 2 of 21)	intron (NM_177465, intron 2 of 21)	8192.0	NM_177465	52020.0	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5615611-2	chr19	5615111	5616111	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5517.0	NM_178637	81601.0	Mm.228930	NM_178637	ENSMUSG00000024926	Kat5	AI839539|CPLA2|Htatip|Htatip1|PLIP|Tip55|Tip60	K(lysine) acetyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	6.0	2.5
Merged-chr13-52634225-2	chr13	52633725	52634725	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 9 of 13)	B4|SINE|B4	37343.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-107324336-2	chr11	107323836	107324836	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	-134955.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-104726023-2	chr4	104725523	104726523	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_104385, intron 12 of 15)	intron (NR_104385, intron 12 of 15)	-40294.0	NM_133882	110382.0	Mm.87072	NM_133882	ENSMUSG00000029656	C8b	4930439B20Rik|AI595927	complement component 8, beta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105276492-2	chr8	105275987	105276987	+	546.5	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_030152)	promoter-TSS (NM_030152)	40.0	NM_030152	78688.0	Mm.475715	NM_030152	ENSMUSG00000014776	Nol3	ARC|B430311C09Rik|MYC|NOP|Nop30	nucleolar protein 3 (apoptosis repressor with CARD domain)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6935605-2	chr19	6935105	6936105	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-1090.0	NM_008431	16528.0	Mm.12894	NM_008431	ENSMUSG00000024957	Kcnk4	Catsperz|MLZ-622|TRAAK|TRAAKt|Tex40	potassium channel, subfamily K, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152602363-2	chr1	152601863	152602863	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	22854.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78210480-2	chr15	78209980	78210980	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4080.0	NM_013645	19293.0	Mm.2766	NM_013645	ENSMUSG00000005716	Pvalb	PV|Parv|Pva	parvalbumin	protein-coding	0.0	0.0	0.0	1.5	4.0	0.5
Merged-chr5-117355677-2	chr5	117355177	117356177	+	546.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033311)	TTS (NM_001033311)	-1628.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	12.5	7.0	8.5	10.5	7.0	8.5
Merged-chr15-42942530-2	chr15	42942030	42943030	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	228288.0	NM_001357957	239405.0	Mm.193274	NM_172815	ENSMUSG00000051920	Rspo2	2610028F08Rik|AA673245|D430027K22|ftls	R-spondin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118288700-2	chr11	118288200	118289200	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033528, intron 1 of 20)	intron (NM_001033528, intron 1 of 20)	1544.0	NM_001033528	72344.0	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78164338-2	chr11	78163838	78164838	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009423, intron 1 of 6)	intron (NM_009423, intron 1 of 6)	1212.0	NM_009423	22032.0	Mm.390418	NM_009423	ENSMUSG00000017386	Traf4	A530032M13Rik|CART1|msp2	TNF receptor associated factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-8687496-2	chr8	8687002	8688002	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176849, intron 1 of 3)	intron (NM_176849, intron 1 of 3)	2660.0	NR_106114	102465762.0		NR_106114	ENSMUSG00000098917	Mir7654	Gm27748|mmu-mir-7654	microRNA 7654	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-174016771-2	chr2	174016271	174017271	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60280.0	NM_172675	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102291674-2	chr11	102291174	102292174	+	546.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001098837, exon 13 of 13)	exon (NM_001098837, exon 13 of 13)	4955.0	NM_001098836	217218.0	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-40478729-2	chr10	40478229	40479229	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198164, intron 11 of 11)	intron (NM_198164, intron 11 of 11)	-91633.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120586671-2	chr8	120586171	120587171	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178856, intron 2 of 4)	intron (NM_178856, intron 2 of 4)	2404.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79227497-2	chr11	79226997	79227997	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	15527.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-116740220-2	chr13	116739720	116740720	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	97958.0	NR_153406	74680.0	Mm.488118	NR_153406	ENSMUSG00000114290	4930435F18Rik	-	RIKEN cDNA 4930435F18 gene	ncRNA	0.0	0.0	2.0	0.0	0.0	3.0
Merged-chr15-5114212-2	chr15	5113712	5114712	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2401.0	NM_026069	67281.0	Mm.10474	NM_026069	ENSMUSG00000041841	Rpl37	3110005M08Rik	ribosomal protein L37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-135594441-2	chr3	135593941	135594941	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 18 of 24)	intron (NM_008689, intron 18 of 24)	97106.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.0	1.5	1.0	0.0	0.0	0.0
Merged-chr7-119821590-1	chr7	119821090	119822090	+	546.0	f1_balb.idr	intron (NM_001004187, intron 7 of 12)	Lx9|LINE|L1	27403.0	NM_001004187	434234.0	Mm.38237	NM_028129	ENSMUSG00000030924	Rexo5	2610020H08Rik	RNA exonuclease 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97384415-1	chr6	97383915	97384915	+	546.0	f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	ORR1F|LTR|ERVL-MaLR	74871.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	2.0	0.0	0.0	0.0	0.0
Merged-chr19-36915855-1	chr19	36915355	36916355	+	546.0	f0_c57.idr	Intergenic	Intergenic	3744.0	NM_028263	72514.0	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-76015156-1	chr9	76014656	76015656	+	546.0	f1_balb.idr	exon (NM_173731, exon 1 of 9)	exon (NM_173731, exon 1 of 9)	179.0	NM_173731	208982.0	Mm.82306	NM_173731	ENSMUSG00000007908	Hmgcll1	BC037381	3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-89290823-1	chr6	89290323	89291323	+	546.0	f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-5098.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-42612879-1	chr19	42612379	42613379	+	546.0	f1_c57bl6.idr	promoter-TSS (NM_053083)	promoter-TSS (NM_053083)	-73.0	NM_053083	67573.0	Mm.178767	NM_053083	ENSMUSG00000025185	Loxl4	4833426I20Rik|Loxc	lysyl oxidase-like 4	protein-coding	6.5	4.0	0.0	4.0	0.5	2.0
Merged-chr10-59694236-1	chr10	59693736	59694736	+	546.0	f1_c57bl6.idr	Intergenic	Intergenic	-8327.0	NM_001359267	216001.0	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64481743-2	chr1	64481243	64482243	+	546.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-51061.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-58403665-1	chr10	58403165	58404165	+	546.0	f1_balb.idr	intron (NM_001359116, intron 2 of 9)	intron (NM_001359116, intron 2 of 9)	9292.0	NM_001346676	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5612688-2	chr17	5612188	5613188	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	120088.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19066793-1	chr10	19066293	19067293	+	546.0	f1_c57bl6.idr	Intergenic	Intergenic	-51383.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.0	1.0	1.0	0.0	3.5	1.0
Merged-chr15-74938378-1	chr15	74937878	74938878	+	546.0	f1_balb.idr	Intergenic	BGLII_Mur|LTR|ERVK	-16673.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	34.0	75.5	61.0	75.5	85.5	58.5
Merged-chr19-11787108-3	chr19	11786609	11787609	+	546.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011502, intron 5 of 10)	intron (NM_011502, intron 5 of 10)	16694.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	5.0	7.5	1.5	5.5	8.5	4.0
Merged-chr2-16332994-2	chr2	16332494	16333494	+	546.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-23310.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-118596184-2	chr6	118595684	118596684	+	546.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001255999, exon 46 of 47)	exon (NM_001255999, exon 46 of 47)	-33928.0	NM_001081112	232339.0	Mm.276116	NM_001081112	ENSMUSG00000007827	Ankrd26	5730521P14Rik|BC008111|mKIAA1074	ankyrin repeat domain 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96378780-2	chr10	96378280	96379280	+	546.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	152573.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80038787-1	chr10	80038287	80039287	+	546.0	f1_c57bl6.idr	intron (NM_025554, intron 1 of 6)	intron (NM_025554, intron 1 of 6)	872.0	NM_025554	66420.0	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99104527-1	chr7	99104027	99105027	+	546.0	f1_c57bl6.idr	intron (NM_178635, intron 3 of 14)	intron (NM_178635, intron 3 of 14)	36617.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	8.0	13.5	18.5	5.5	19.0	9.5
Merged-chr10-53926123-2	chr10	53925623	53926623	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 8 of 12)	B3|SINE|B2	149673.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-75315495-1	chr9	75314995	75315995	+	546.0	f1_balb.idr	intron (NM_010313, intron 3 of 12)	intron (NM_010313, intron 3 of 12)	1427.0	NM_138719	14697.0	Mm.17604	NM_010313	ENSMUSG00000032192	Gnb5	GBS|Gbeta5|flr	guanine nucleotide binding protein (G protein), beta 5	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr4-123524070-2	chr4	123523570	123524570	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 5 of 92)	intron (NM_001199137, intron 5 of 92)	-92350.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-144394665-1	chr3	144394165	144395165	+	546.0	f1_balb.idr	Intergenic	Intergenic	175551.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106326009-1	chr11	106325509	106326509	+	546.0	f1_balb.idr	intron (NM_133199, intron 18 of 23)	intron (NM_133199, intron 18 of 23)	-11447.0	NM_001313939	15985.0	Mm.2987	NM_008339	ENSMUSG00000040592	Cd79b	B29|Ig-beta|Igb|Igbeta	CD79B antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87911994-1	chr6	87911494	87912494	+	546.0	f1_balb.idr	intron (NM_017477, intron 23 of 23)	intron (NM_017477, intron 23 of 23)	-1982.0	NM_173737	232210.0	Mm.246241	NM_173737	ENSMUSG00000030060	Hmces	8430410A17Rik|C85376	5-hydroxymethylcytosine (hmC) binding, ES cell specific	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34137139-1	chr17	34136639	34137639	+	546.0	f1_c57bl6.idr	exon (NM_010386, exon 3 of 6)	exon (NM_010386, exon 3 of 6)	-8277.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	25.0	20.5	13.0	16.5	39.5	33.5
Merged-chr7-80644744-1	chr7	80644244	80645244	+	546.0	f1_balb.idr	TTS (NR_040343)	TTS (NR_040343)	8727.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100861440-2	chr7	100860934	100861934	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177073, intron 1 of 10)	intron (NM_177073, intron 1 of 10)	1979.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88272947-1	chr1	88272447	88273447	+	546.0	f0_balb.idr	intron (NM_198652, intron 3 of 7)	intron (NM_198652, intron 3 of 7)	-3539.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133400230-1	chr4	133399730	133400730	+	546.0	f1_c57bl6.idr	intron (NM_016981, intron 1 of 11)	intron (NM_016981, intron 1 of 11)	30454.0	NR_039582	100628620.0		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr5-32159889-1	chr5	32159389	32160389	+	546.0	f0_c57.idr	Intergenic	Intergenic	23417.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-44786989-2	chr1	44786489	44787489	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028450, intron 9 of 10)	ORR1B1-int|LTR|ERVL-MaLR	-42040.0	NR_040602	75066.0	Mm.416932	NR_040602	ENSMUSG00000101701	4930521E06Rik	-	RIKEN cDNA 4930521E06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3366873-1	chr12	3366373	3367373	+	546.0	f1_balb.idr	exon (NM_008445, exon 1 of 8)	exon (NM_008445, exon 1 of 8)	1741.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10985905-1	chr16	10985405	10986405	+	546.0	f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	7216.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	1.0	3.0	0.5	7.0	5.0	1.5
Merged-chr2-49364788-1	chr2	49364288	49365288	+	546.0	f1_balb.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-86698.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23983135-1	chr18	23982635	23983635	+	546.0	f1_balb.idr	Intergenic	B3|SINE|B2	-6499.0	NM_011755	22694.0	Mm.290596	NM_011755	ENSMUSG00000063281	Zfp35	Zfp-35|Znf271|mszf13|mszf20-1|mszf28|mszf68	zinc finger protein 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70596631-2	chr11	70596131	70597131	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 1 of 30)	B3|SINE|B2	-19263.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157034422-2	chr2	157033922	157034922	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164663, intron 6 of 14)	intron (NM_001164663, intron 6 of 14)	-27347.0	NM_025853	66934.0	Mm.25410	NM_025853	ENSMUSG00000027635	Dsn1	1700022L09Rik|AW552447	DSN1 homolog, MIS12 kinetochore complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-87473374-1	chr8	87472874	87473874	+	546.0	f1_c57bl6.idr	promoter-TSS (NM_019626)	promoter-TSS (NM_019626)	258.0	NR_125722	100040294.0	Mm.213632	NR_033430	ENSMUSG00000097248	Gm2694	C230036H16Rik|linc1582	predicted gene 2694	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47439135-1	chr9	47438635	47439635	+	546.0	f0_balb.idr	Intergenic	B4A|SINE|B4	-91035.0	NM_001310841	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-122974077-2	chr7	122973577	122974577	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175023, intron 1 of 2)	intron (NM_175023, intron 1 of 2)	3513.0	NM_175023	19647.0	Mm.4480	NM_011247	ENSMUSG00000030779	Rbbp6	4933422O15Rik|AI316869|BB233631|C030034J04Rik|C77662|P2P-R|PACT	retinoblastoma binding protein 6, ubiquitin ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-61685345-1	chr8	61684845	61685845	+	546.0	f1_c57bl6.idr	intron (NM_001293772, intron 9 of 21)	ORR1A4|LTR|ERVL-MaLR	74753.0	NM_001293773	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	3.0	0.0	0.0	0.0	1.0	0.0
Merged-chr4-34935818-1	chr4	34935318	34936318	+	546.0	f1_balb.idr	Intergenic	B2_Mm1a|SINE|B2	-24337.0	NR_040652	73696.0	Mm.1361	NR_040652	ENSMUSG00000085824	Platr9	2410114N07Rik	pluripotency associated transcript 9	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20951296-1	chr10	20950796	20951796	+	546.0	f1_balb.idr	Intergenic	Intergenic	-1251.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45444158-1	chr7	45443658	45444658	+	546.0	f1_balb.idr	intron (NM_030678, intron 8 of 15)	intron (NM_030678, intron 8 of 15)	9319.0	NM_030678	14936.0	Mm.275654	NM_030678	ENSMUSG00000003865	Gys1	Gys3|MGS	glycogen synthase 1, muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-4837485-1	chr18	4836985	4837985	+	546.0	f1_c57bl6.idr	intron (NR_045881, intron 5 of 9)	intron (NR_045881, intron 5 of 9)	24999.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-131279268-1	chr1	131278768	131279768	+	546.0	f1_c57bl6.idr	intron (NM_019777, intron 1 of 21)	intron (NM_019777, intron 1 of 21)	295.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0.0	16.5	4.5	2.0	8.5	5.5
Merged-chr16-75535853-1	chr16	75535353	75536353	+	546.0	f1_c57bl6.idr	Intergenic	RLTR11A|LTR|ERVK	50208.0	NM_001252513	320355.0	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-53599061-1	chr10	53598561	53599561	+	546.0	f1_balb.idr	intron (NM_025541, intron 1 of 3)	intron (NM_025541, intron 1 of 3)	2100.0	NM_025541	66403.0	Mm.272989	NM_025541	ENSMUSG00000019857	Asf1a	2310079C17Rik|C79052	anti-silencing function 1A histone chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-109354117-1	chr3	109353617	109354617	+	546.0	f0_balb.idr	intron (NM_020505, intron 1 of 26)	intron (NM_020505, intron 1 of 26)	13434.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	1.5	2.5	0.0	4.5	0.0	2.0
Merged-chr1-156939555-1	chr1	156939055	156940055	+	546.0	f1_balb.idr	promoter-TSS (NM_001159965)	promoter-TSS (NM_001159965)	71.0	NM_001159968	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	0.0	0.0	1.5	0.0	0.0	0.5
Merged-chr1-183956616-1	chr1	183956116	183957116	+	546.0	f1_c57bl6.idr	Intergenic	Intergenic	77382.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	3.0	8.5	1.5	2.0	6.5	2.0
Merged-chr6-121142449-2	chr6	121141949	121142949	+	546.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11427.0	NM_001270475	194401.0	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154943907-1	chr4	154943407	154944407	+	546.0	f0_c57.idr	Intergenic	Intergenic	-15830.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	96.0	243.5	166.5	176.0	467.0	276.5
Merged-chr4-46449144-1	chr4	46448644	46449644	+	546.0	f1_c57bl6.idr	Intergenic	Intergenic	-1782.0	NM_130889	67628.0	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-15195176-1	chr3	15194676	15195676	+	546.0	f1_balb.idr	Intergenic	Intergenic	137126.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr13-70618953-1	chr13	70618453	70619453	+	546.0	f0_balb.idr	intron (NM_144837, intron 6 of 18)	intron (NM_144837, intron 6 of 18)	18681.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27780822-1	chr2	27780322	27781322	+	546.0	f1_balb.idr	Intergenic	Intergenic	70239.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-9136658-1	chr11	9136158	9137158	+	546.0	f0_balb.idr	TTS (NM_001159402)	TTS (NM_001159402)	18151.0	NM_001159402	22271.0	Mm.4610	NM_009477	ENSMUSG00000020407	Upp1	AI325217|UPase|UdRPase|Up|Upp	uridine phosphorylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-14628056-1	chr13	14627556	14628556	+	546.0	f1_balb.idr	Intergenic	Intergenic	-2189.0	NM_001104646	105351.0	Mm.41450	NM_134067	ENSMUSG00000039182	AW209491	-	expressed sequence AW209491	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135780342-1	chr5	135779842	135780842	+	546.0	f1_balb.idr	intron (NM_008617, intron 1 of 8)	PB1|SINE|Alu	1693.0	NM_008617	17448.0	Mm.297096	NM_008617	ENSMUSG00000019179	Mdh2	MDH|Mdh-2|Mor-1|Mor1	malate dehydrogenase 2, NAD (mitochondrial)	protein-coding	3.0	0.0	1.0	0.0	7.5	0.0
Merged-chr2-26578647-2	chr2	26578155	26579155	+	546.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-2401.0	NM_178444	353156.0	Mm.268933	NM_178444	ENSMUSG00000026921	Egfl7	VE-statin|Zneu1	EGF-like domain 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106054271-2	chr8	106053771	106054771	+	546.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025518)	TTS (NM_025518)	-5332.0	NM_010901	18021.0	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105935407-1	chr8	105934907	105935907	+	546.0	f1_c57bl6.idr	TTS (NM_013640)	TTS (NM_013640)	-1545.0	NM_023182	109660.0	Mm.2745	NM_023182	ENSMUSG00000031896	Ctrl	0910001G08Rik|1810004D15Rik|AV005227|Ctra-1|Ctra1|chymopasin|mFLJ00366	chymotrypsin-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148652271-1	chr5	148651771	148652771	+	546.0	f1_c57bl6.idr	Intergenic	Intergenic	-89569.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-105574961-1	chr10	105574461	105575461	+	546.0	f1_c57bl6.idr	promoter-TSS (NM_177368)	promoter-TSS (NM_177368)	410.0	NR_038032	327812.0	Mm.191660	NR_038032	ENSMUSG00000085282	Gm15663	9330159K06	predicted gene 15663	ncRNA	8.0	3.0	3.0	15.5	8.0	0.0
Merged-chr14-97502828-2	chr14	97502328	97503328	+	546.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR73|LTR|ERV1	666937.0	NM_001038610	13134.0	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund family transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-58460636-2	chr16	58460136	58461136	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356484, intron 12 of 15)	RMER17A2|LTR|ERVK	52101.0	NM_028523	73379.0	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155821808-2	chr2	155821308	155822308	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010579, intron 5 of 5)	intron (NM_010579, intron 5 of 5)	-2605.0	NR_015528	613262.0	Mm.330707	NR_015528	ENSMUSG00000074649	BC029722	-	cDNA sequence BC029722	ncRNA	4.5	5.0	2.0	0.0	2.0	1.0
Merged-chr7-127961783-2	chr7	127961283	127962283	+	546.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5696.0	NM_001347649	233908.0	Mm.277680	NM_139149	ENSMUSG00000030795	Fus	D430004D17Rik|D930039C12Rik|Fus1|Tls	fused in sarcoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182420896-1	chr1	182420396	182421396	+	546.0	f1_balb.idr	intron (NM_173378, intron 1 of 17)	intron (NM_173378, intron 1 of 17)	11729.0	NM_173378	209456.0	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43461462-2	chr1	43460962	43461962	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	15711.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171327495-1	chr1	171326995	171327995	+	546.0	f1_c57bl6.idr	Intergenic	Intergenic	-1313.0	NM_001357550	21945.0	Mm.270139	NM_011615	ENSMUSG00000013973	Dedd	CASP8IP1|DEFT|Dedpro1|FLDED1|KE05	death effector domain-containing	protein-coding	30.0	80.0	38.0	4.0	22.0	18.0
Merged-chr2-30716696-2	chr2	30716196	30717196	+	546.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4514.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3644971-1	chr4	3644471	3645471	+	546.0	f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-11535.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	1.5	1.0	7.5	1.0	6.5	3.5
Merged-chr9-32430655-1	chr9	32430155	32431155	+	546.0	f1_c57bl6.idr	intron (NM_008026, intron 5 of 8)	intron (NM_008026, intron 5 of 8)	36670.0	NM_001168354	56379.0	Mm.390168	NM_019659	ENSMUSG00000041248	Kcnj1	Kir1.1|ROMK|Romk2	potassium inwardly-rectifying channel, subfamily J, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81609016-1	chr10	81608516	81609516	+	546.0	f1_balb.idr	non-coding (NR_030677, exon 3 of 3)	non-coding (NR_030677, exon 3 of 3)	2708.0	NR_030677	268319.0	Mm.131825	NM_001033363	ENSMUSG00000074862	BC025920	-	zinc finger protein pseudogene	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4885521-1	chr11	4885021	4886021	+	546.0	f1_balb.idr	intron (NM_008698, intron 4 of 9)	B3|SINE|B2	-5824.0	NR_105883	102466764.0		NR_105883	ENSMUSG00000098296	Mir6918	Gm27968|mmu-mir-6918	microRNA 6918	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-16974376-1	chr7	16973876	16974876	+	546.0	f0_balb.idr	Intergenic	Intergenic	14697.0	NM_001007569	71691.0	Mm.275673	NM_001007569	ENSMUSG00000041141	Pnmal1	0710005I19Rik|4930488B01Rik|AI844408|Pnma8a|R74771	PNMA-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-25485544-1	chr18	25485044	25486044	+	546.0	f1_c57bl6.idr	intron (NR_155531, intron 12 of 13)	L2|LINE|L2	194204.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139308772-1	chr4	139308272	139309272	+	546.0	f1_c57bl6.idr	intron (NM_145384, intron 1 of 8)	intron (NM_145384, intron 1 of 8)	1936.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	9.0	19.5	19.5	21.5	15.0	30.0
Merged-chr17-23791095-1	chr17	23790595	23791595	+	546.0	f1_balb.idr	Intergenic	MER70B|LTR|ERVL	-4879.0	NM_001357140	76917.0	Mm.269613	NM_029798	ENSMUSG00000023911	Flywch2	2810417J12Rik|3010014L17Rik|AW548203	FLYWCH family member 2	protein-coding	21.5	28.5	24.0	7.0	21.0	22.0
Merged-chr7-15904598-1	chr7	15904098	15905098	+	546.0	f1_c57bl6.idr	TTS (NM_001145190)	TTS (NM_001145190)	2952.0	NM_001145190	546024.0	Mm.259041	NM_001033638	ENSMUSG00000074365	Crxos	AA606869|AY590891|Crxos1|Egam1	cone-rod homeobox, opposite strand	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr8-71526691-1	chr8	71526191	71527191	+	546.0	f1_c57bl6.idr	Intergenic	Intergenic	10746.0	NM_198095	69550.0	Mm.260325	NM_198095	ENSMUSG00000046718	Bst2	2310015I10Rik|Bst-2|C87040|CD317|DAMP-1|GREG	bone marrow stromal cell antigen 2	protein-coding	14.5	2.0	9.0	2.5	0.0	6.0
Merged-chr1-14755093-1	chr1	14754593	14755593	+	546.0	f1_c57bl6.idr	intron (NM_001360810, intron 1 of 2)	intron (NM_001360810, intron 1 of 2)	873.0	NM_001360810	17681.0	Mm.5820	NM_010827	ENSMUSG00000025930	Msc	MyoR|bHLHa22	musculin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-27741252-2	chr11	27740752	27741752	+	546.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	843072.0	NM_001166661	216613.0	Mm.93759	NM_181577	ENSMUSG00000032878	Ccdc85a	-	coiled-coil domain containing 85A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-7375350-1	chr13	7374850	7375850	+	546.0	f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-726579.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-16865034-1	chr12	16864534	16865534	+	546.0	f1_balb.idr	Intergenic	Intergenic	-29944.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	26.5	51.0	63.0	46.5	88.5	95.5
Merged-chr15-59562882-1	chr15	59562382	59563382	+	546.0	f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	B1_Mur4|SINE|Alu	-85772.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.0	5.5	0.0	1.5	0.0	0.0
Merged-chr4-48131776-1	chr4	48131276	48132276	+	546.0	f1_c57bl6.idr	5' UTR (NM_026343, exon 2 of 8)	5' UTR (NM_026343, exon 2 of 8)	6857.0	NM_026343	67727.0	Mm.171334	NM_026343	ENSMUSG00000061455	Stx17	4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351	syntaxin 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-36555213-1	chr19	36554713	36555713	+	546.0	f0_balb.idr	intron (NM_001163471, intron 1 of 20)	intron (NM_001163471, intron 1 of 20)	574.0	NM_172637	226098.0	Mm.61107	NM_172637	ENSMUSG00000041180	Hectd2	4921524L07|A630025O09Rik|AW212605	HECT domain E3 ubiquitin protein ligase 2	protein-coding	3.0	1.0	4.0	1.0	1.5	0.0
Merged-chr17-13215689-2	chr17	13215189	13216189	+	546.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-5499.0	NM_013741	27263.0	Mm.371809	NM_013741	ENSMUSG00000073458	Smok2a	Smok2	sperm motility kinase 2A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-64866052-1	chr5	64865552	64866552	+	546.0	f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	62529.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43059671-2	chr4	43059171	43060171	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081413, intron 1 of 39)	intron (NM_001081413, intron 1 of 39)	718.0	NM_001310758	22249.0	Mm.128892	NM_021468	ENSMUSG00000028456	Unc13b	Munc13-1|Munc13-2|Unc13a|Unc13h1|Unc13h2	unc-13 homolog B (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-18710166-2	chr3	18709666	18710666	+	546.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-229689.0	NR_040544	73959.0	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67842621-1	chr5	67842121	67843121	+	546.0	f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	4810.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-30008089-2	chr17	30007589	30008589	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151443, intron 1 of 4)	intron (NR_151443, intron 1 of 4)	3050.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-65988037-2	chr14	65987537	65988537	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178747, intron 11 of 11)	intron (NM_178747, intron 11 of 11)	19554.0	NM_013492	12759.0	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-136990021-2	chr5	136989521	136990521	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011962, intron 8 of 18)	intron (NM_011962, intron 8 of 18)	-1412.0	NR_030483	735283.0		NR_030483	ENSMUSG00000076240	Mir702	Mirn702|mir-702|mmu-mir-702	microRNA 702	ncRNA	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr15-27851065-2	chr15	27850565	27851565	+	546.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081302, exon 15 of 57)	exon (NM_001081302, exon 15 of 57)	-169523.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123453557-1	chr5	123453057	123454057	+	546.0	f1_c57bl6.idr	3' UTR (NM_133917, exon 17 of 17)	3' UTR (NM_133917, exon 17 of 17)	28544.0	NM_029594	76399.0	Mm.75049	NM_029594	ENSMUSG00000029437	Il31	1700013B14Rik	interleukin 31	protein-coding	0.0	6.0	2.5	0.0	0.0	0.0
Merged-chr11-62539644-1	chr11	62539144	62540144	+	546.0	f1_c57bl6.idr	promoter-TSS (NM_028448)	promoter-TSS (NM_028448)	-383.0	NM_028448	73139.0	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-20772994-1	chr15	20772494	20773494	+	546.0	f1_balb.idr	Intergenic	L1_Mus1|LINE|L1	-106244.0	NM_022816	64833.0	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91884113-2	chr16	91883613	91884613	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	47517.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-53862109-1	chr4	53861609	53862609	+	546.0	f0_balb.idr	TTS (NM_028053)	TTS (NM_028053)	36064.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-22113917-2	chr3	22113369	22114369	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	37217.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-37964482-2	chr18	37963982	37964982	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175684, intron 11 of 19)	MIR|SINE|MIR	5249.0	NM_175684	319262.0	Mm.285060	NM_175684	ENSMUSG00000038524	Fchsd1	A030002D08Rik	FCH and double SH3 domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-45759382-1	chr16	45758882	45759882	+	546.0	f1_balb.idr	intron (NM_001357078, intron 12 of 16)	intron (NM_001357078, intron 12 of 16)	-16427.0	NM_172511	213012.0	Mm.247453	NM_172511	ENSMUSG00000033157	Abhd10	-	abhydrolase domain containing 10	protein-coding	5.0	13.0	6.5	8.0	10.0	5.5
Merged-chr15-49244656-1	chr15	49244156	49245156	+	546.0	f1_c57bl6.idr	Intergenic	MTA_Mm-int|LTR|ERVL-MaLR	-452667.0	NM_001081391	239420.0	Mm.309363	NM_001081391	ENSMUSG00000022311	Csmd3	4930500N14Rik|mKIAA1894	CUB and Sushi multiple domains 3	protein-coding	7.0	0.0	0.0	9.5	0.0	0.0
Merged-chr9-111615391-2	chr9	111614891	111615891	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001324546, intron 1 of 9)	intron (NM_001324546, intron 1 of 9)	74957.0	NM_016853	20840.0	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37295509-1	chr13	37295009	37296009	+	546.0	f0_balb.idr	Intergenic	Intergenic	-49836.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	1.5	1.5	6.0	1.0	16.0	0.5
Merged-chr2-165786995-1	chr2	165786495	165787495	+	546.0	f1_balb.idr	intron (NM_027230, intron 23 of 23)	intron (NM_027230, intron 23 of 23)	71178.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-57427369-1	chr8	57426869	57427869	+	546.0	f0_balb.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-28554.0	NM_009136	20284.0	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	3.5	0.0	0.0	4.0	0.0	0.5
Merged-chr19-60810894-1	chr19	60810394	60811394	+	546.0	f1_c57bl6.idr	promoter-TSS (NM_001347464)	promoter-TSS (NM_001347464)	-661.0	NM_001360619	67894.0	Mm.26148	NM_026437	ENSMUSG00000024993	Fam45a	1810055E12Rik	family with sequence similarity 45, member A	protein-coding	11.0	15.5	13.0	7.0	6.0	13.0
Merged-chr13-54468282-1	chr13	54467782	54468782	+	546.0	f1_c57bl6.idr	intron (NM_028597, intron 1 of 5)	intron (NM_028597, intron 1 of 5)	558.0	NM_028597	73666.0	Mm.292487	NM_028597	ENSMUSG00000025872	Thoc3	2410044K02Rik|AL033344	THO complex 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22123186-1	chr9	22122686	22123686	+	546.0	f1_balb.idr	Intergenic	Intergenic	-5991.0	NM_001357312	66126.0	Mm.29801	NM_170777	ENSMUSG00000013822	Elof1	1110011K10Rik	ELF1 homolog, elongation factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-95376975-1	chr13	95376475	95377475	+	546.0	f1_balb.idr	Intergenic	RLTR10C|LTR|ERVK	-1618.0	NM_025630	66549.0	Mm.36785	NM_025630	ENSMUSG00000021681	Aggf1	2010009L17Rik|2310029P06Rik|AW112072|Peg3|VG5Q	angiogenic factor with G patch and FHA domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-105307822-1	chr13	105307322	105308322	+	546.0	f1_balb.idr	Intergenic	RMER4A|LTR|ERVK	-13337.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21467620-2	chr9	21467120	21468120	+	546.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001253893, exon 4 of 21)	exon (NM_001253893, exon 4 of 21)	28944.0	NR_029585	387194.0		NR_029585	ENSMUSG00000065547	Mir199a-1	Mirn199|Mirn199a-1|mir-199a-1	microRNA 199a-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-17888856-1	chr15	17888356	17889356	+	546.0	f1_balb.idr	Intergenic	L1Md_F2|LINE|L1	480771.0	NR_045711	70886.0	Mm.399021	NR_045711	ENSMUSG00000098150	4921515E04Rik	-	RIKEN cDNA 4921515E04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160653149-1	chr2	160652649	160653649	+	546.0	f0_balb.idr	intron (NM_009408, intron 2 of 20)	intron (NM_009408, intron 2 of 20)	7252.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80659775-2	chr10	80659275	80660275	+	546.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2704.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29004474-1	chr7	29003974	29004974	+	546.0	f1_c57bl6.idr	exon (NM_009109, exon 104 of 106)	exon (NM_009109, exon 104 of 106)	21620.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	0.0	0.0	0.0	3.5	0.0	0.0
Merged-chr6-72433805-1	chr6	72433305	72434305	+	546.0	f1_balb.idr	3' UTR (NM_145569, exon 9 of 9)	3' UTR (NM_145569, exon 9 of 9)	-4878.0	NR_046011	78108.0	Mm.440743	NR_046011	ENSMUSG00000108591	Particl	4930414L22Rik|AI449819	promoter of Mat2a antisense radiation induced circulating long non-coding RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93182037-1	chr10	93181537	93182537	+	546.0	f0_balb.idr	intron (NM_146239, intron 1 of 16)	intron (NM_146239, intron 1 of 16)	19252.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	20.0	9.5	11.0	22.5	35.0	8.5
Merged-chr14-66812869-2	chr14	66812369	66813369	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009955, intron 11 of 13)	URR1A|DNA|hAT-Charlie	55731.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-160982631-1	chr1	160982131	160983131	+	546.0	f1_c57bl6.idr	intron (NM_080844, intron 1 of 7)	intron (NM_080844, intron 1 of 7)	4025.0	NM_080844	11905.0	Mm.260770	NM_080844	ENSMUSG00000026715	Serpinc1	AI114908|ATIII|At-3|At3	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	protein-coding	11.0	0.0	8.5	7.0	1.0	1.0
Merged-chr1-58027587-1	chr1	58027087	58028087	+	546.0	f1_c57bl6.idr	Intergenic	Intergenic	-2382.0	NM_009676	11761.0	Mm.26787	NM_009676	ENSMUSG00000063558	Aox1	AI196512|AI255253|Ao|Aox-1|Aox-2|Aox2|Moro|Ro	aldehyde oxidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-49135251-1	chr7	49134751	49135751	+	546.0	f0_balb.idr	intron (NR_154465, intron 3 of 3)	ORR1E|LTR|ERVL-MaLR	26907.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-33584846-1	chr16	33584346	33585346	+	546.0	f1_balb.idr	intron (NM_001083902, intron 4 of 11)	intron (NM_001083902, intron 4 of 11)	66251.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91489443-1	chr16	91488943	91489943	+	546.0	f1_balb.idr	intron (NM_010508, intron 1 of 10)	Lx9|LINE|L1	4228.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-15889683-1	chr16	15889183	15890183	+	546.0	f0_c57.idr	TTS (NM_007679)	TTS (NM_007679)	2397.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40335002-2	chr9	40334502	40335502	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 2 of 20)	intron (NM_001357617, intron 2 of 20)	1530.0	NR_040728	73558.0	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139463931-1	chr5	139463431	139464431	+	546.0	f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-3397.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127251538-2	chr7	127251038	127252038	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360916, intron 2 of 2)	intron (NM_001360916, intron 2 of 2)	6437.0	NM_001360916	244216.0	Mm.41038	NM_177362	ENSMUSG00000054716	Zfp771	G630024C07Rik|Znf771	zinc finger protein 771	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-43506445-2	chr1	43505945	43506945	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	60694.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-121124905-1	chr2	121124405	121125405	+	546.0	f0_balb.idr	Intergenic	Intergenic	-15114.0	NM_001160424	640543.0	Mm.478785	NM_001160424	ENSMUSG00000079103	Tgm7	TGMZ|TGz	transglutaminase 7	protein-coding	8.0	7.5	0.0	1.5	1.5	4.0
Merged-chr3-94811829-2	chr3	94811329	94812329	+	546.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-25314.0	NM_001037711	70737.0	Mm.87634	NM_001037711	ENSMUSG00000068876	Cgn	6330408J11Rik	cingulin	protein-coding	1.0	0.0	0.5	1.0	0.0	2.0
Merged-chr10-50593942-2	chr10	50593442	50594442	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 1 of 41)	intron (NM_198007, intron 1 of 41)	1273.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-11271009-1	chr8	11270509	11271509	+	546.0	f0_balb.idr	intron (NM_009931, intron 1 of 51)	intron (NM_009931, intron 1 of 51)	-41796.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-32737523-1	chr3	32737023	32738023	+	546.0	f0_balb.idr	promoter-TSS (NM_029017)	promoter-TSS (NM_029017)	460.0	NM_025316	66046.0	Mm.28058	NM_025316	ENSMUSG00000027673	Ndufb5	0610007D05Rik|AU015782|CI-SGDH|SGDH	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5	protein-coding	21.0	9.5	20.5	21.0	16.5	26.0
Merged-chr13-92275133-1	chr13	92274633	92275633	+	546.0	f1_balb.idr	intron (NM_001311120, intron 13 of 23)	intron (NM_001311120, intron 13 of 23)	-79650.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	3.5	3.5	2.0	5.5	3.5	5.5
Merged-chr2-154713763-1	chr2	154713263	154714263	+	546.0	f1_balb.idr	Intergenic	B3|SINE|B2	56737.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0.5	9.0	4.0	6.5	15.0	5.0
Merged-chr14-118231881-1	chr14	118231381	118232381	+	546.0	f1_c57bl6.idr	Intergenic	Intergenic	-4351.0	NR_131969	105245869.0	Mm.460408	NR_131969	ENSMUSG00000090534	LOC105245869	-	uncharacterized LOC105245869	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-149243169-1	chr5	149242669	149243669	+	546.0	f1_c57bl6.idr	Intergenic	Intergenic	-21835.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-82288746-2	chr1	82288246	82289246	+	546.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010570, exon 1 of 2)	exon (NM_010570, exon 1 of 2)	2693.0	NM_010570	16367.0	Mm.4952	NM_010570	ENSMUSG00000055980	Irs1	G972R|IRS-1	insulin receptor substrate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-70988286-2	chr17	70987786	70988786	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023402, intron 1 of 3)	intron (NM_023402, intron 1 of 3)	2230.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-35373082-1	chr4	35372582	35373582	+	546.0	f1_c57bl6.idr	Intergenic	Intergenic	-147202.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121885988-1	chr3	121885488	121886488	+	546.0	f1_balb.idr	Intergenic	Intergenic	-67241.0	NM_172525	214137.0	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63151843-1	chr4	63151343	63152343	+	546.0	f0_balb.idr	intron (NM_007443, intron 2 of 9)	intron (NM_007443, intron 2 of 9)	2329.0	NM_007443	11699.0	Mm.2197	NM_007443	ENSMUSG00000028356	Ambp	AI194774|ASPI|HI-30|Intin4|Itil|UTI	alpha 1 microglobulin/bikunin	protein-coding	0.0	2.0	2.5	0.0	2.0	5.0
Merged-chr16-93786025-1	chr16	93785525	93786525	+	546.0	f1_c57bl6.idr	intron (NM_001357118, intron 25 of 35)	intron (NM_001357118, intron 25 of 35)	8876.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-117018637-1	chr11	117018137	117019137	+	546.0	f0_balb.idr	Intergenic	Intergenic	-58146.0	NR_027059	76972.0	Mm.309167	NR_027059	ENSMUSG00000086859	Snhg20	2810008D09Rik	small nucleolar RNA host gene 20	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-82820846-1	chr7	82820346	82821346	+	546.0	f0_balb.idr	Intergenic	Intergenic	-46487.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104369781-1	chr8	104369281	104370281	+	546.0	f0_balb.idr	intron (NM_153582, intron 1 of 3)	L1MC4|LINE|L1	26026.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-77625230-1	chr11	77624730	77625730	+	546.0	f1_c57bl6.idr	Intergenic	Intergenic	-17415.0	NM_144825	216965.0	Mm.340436	NM_144825	ENSMUSG00000017291	Taok1	2810468K05Rik|AU020252|D130018F14Rik|Map3k16|Markk|Psk2|mKIAA1361	TAO kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105143266-2	chr5	105142766	105143766	+	546.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3680.0	NM_001359080	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11555636-1	chr2	11555136	11556136	+	546.0	f1_c57bl6.idr	Intergenic	RLTR9F|LTR|ERVK	-1707.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-136919558-1	chr2	136919058	136920058	+	546.0	f0_balb.idr	intron (NM_001355671, intron 2 of 6)	intron (NM_001355671, intron 2 of 6)	20207.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62321166-1	chr15	62320666	62321666	+	546.0	f1_c57bl6.idr	Intergenic	Intergenic	-101715.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr5-24404312-1	chr5	24403812	24404812	+	546.0	f1_c57bl6.idr	intron (NM_029020, intron 9 of 15)	intron (NM_029020, intron 9 of 15)	-9139.0	NM_183000	171209.0	Mm.299636	NM_183000	ENSMUSG00000038276	Asic3	AW742291|Accn3|DRASIC|SLNAC1|TNAC1	acid-sensing (proton-gated) ion channel 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55320658-1	chr13	55320158	55321158	+	546.0	f1_balb.idr	intron (NM_009000, intron 5 of 7)	intron (NM_009000, intron 5 of 7)	1322.0	NM_009000	19336.0	Mm.220923	NM_009000	ENSMUSG00000034789	Rab24	6530406O07Rik	RAB24, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-96876539-1	chr10	96876039	96877039	+	546.0	f0_balb.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-159229.0	NR_045358	75301.0	Mm.108650	NR_045358	ENSMUSG00000111924	4930556N09Rik	-	RIKEN cDNA 4930556N09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117802863-1	chr8	117802363	117803363	+	546.0	f1_balb.idr	promoter-TSS (NM_026758)	promoter-TSS (NM_026758)	-889.0	NM_001357232	68533.0	Mm.181836	NM_026758	ENSMUSG00000031843	Mphosph6	1110001M01Rik|AA536809|C86426	M phase phosphoprotein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-58570590-1	chr18	58570090	58571090	+	546.0	f0_balb.idr	intron (NM_001081072, intron 1 of 9)	intron (NM_001081072, intron 1 of 9)	14350.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	4.5	3.5	1.5	5.0	3.5	1.5
Merged-chr17-56896386-1	chr17	56895886	56896886	+	546.0	f1_c57bl6.idr	intron (NM_022328, intron 7 of 11)	intron (NM_022328, intron 7 of 11)	20753.0	NM_030141	78625.0	Mm.160106	NM_030141	ENSMUSG00000024209	1700061G19Rik	1700026H02|AI507598	RIKEN cDNA 1700061G19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30875731-1	chr7	30875231	30876231	+	546.0	f1_c57bl6.idr	intron (NR_102722, intron 6 of 15)	intron (NR_102722, intron 6 of 15)	3297.0	NM_009845	12483.0	Mm.260994	NM_009845	ENSMUSG00000030577	Cd22	A530093D23|Lyb-8|Lyb8	CD22 antigen	protein-coding	0.5	0.0	0.0	0.5	0.5	2.0
Merged-chr10-53628555-1	chr10	53628055	53629055	+	546.0	f1_c57bl6.idr	intron (NM_027830, intron 2 of 13)	intron (NM_027830, intron 2 of 13)	1884.0	NM_027830	71567.0	Mm.278221	NM_027830	ENSMUSG00000058298	Mcm9	9030408O17Rik|Gm235|Mcmdc1	minichromosome maintenance 9 homologous recombination repair factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-46442086-1	chr11	46441586	46442586	+	546.0	f0_balb.idr	3' UTR (NM_025426, exon 3 of 3)	3' UTR (NM_025426, exon 3 of 3)	5125.0	NM_025426	66213.0	Mm.24159	NM_025426	ENSMUSG00000020397	Med7	1110063B05Rik|Crsp33|Crsp9	mediator complex subunit 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24351891-2	chr5	24351391	24352391	+	546.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013569)	promoter-TSS (NM_013569)	-287.0	NM_013569	16511.0	Mm.6539	NM_013569	ENSMUSG00000038319	Kcnh2	AI326795|ERG1|LQT|Lqt2|M-erg|Merg1|merg1a|merg1b	potassium voltage-gated channel, subfamily H (eag-related), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-13658550-1	chr1	13658050	13659050	+	546.0	f1_c57bl6.idr	intron (NM_145381, intron 1 of 6)	L2c|LINE|L2	1959.0	NM_145381	212442.0	Mm.89572	NM_145381	ENSMUSG00000025937	Lactb2	Cgi-83|E430032H21Rik	lactamase, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115297106-2	chr11	115296588	115297588	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178035, intron 1 of 5)	intron (NM_178035, intron 1 of 5)	458.0	NM_178035	328035.0	Mm.21995	NM_178035	ENSMUSG00000044788	Fads6	BC044804	fatty acid desaturase domain family, member 6	protein-coding	0.0	2.0	3.5	0.0	0.0	0.0
Merged-chr8-117294125-2	chr8	117293645	117294645	+	545.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	37126.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-7896262-2	chr9	7895762	7896762	+	545.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-23092.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152115005-2	chr2	152114505	152115505	+	545.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9481.0	NM_029688	76650.0	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-179587727-2	chr1	179587227	179588227	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146105, intron 2 of 10)	L1MB4|LINE|L1	41198.0	NM_146105	226744.0	Mm.87662	NM_146105	ENSMUSG00000038949	Cnst	9630058J23Rik	consortin, connexin sorting protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-57335822-2	chr16	57335322	57336322	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025599, intron 1 of 9)	RCHARR1|DNA|hAT-Charlie	-17455.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	18.0	27.5	20.0	6.5	48.5	34.0
Merged-chr16-91747991-2	chr16	91747491	91748491	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	18620.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-93987316-2	chr12	93986816	93987816	+	545.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	59978.0	NR_106175	102465890.0		NR_106175	ENSMUSG00000098498	Mir8099-1	Gm27917|mmu-mir-8099-1	microRNA 8099-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81231738-2	chr13	81231238	81232238	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 85 of 89)	intron (NM_054053, intron 85 of 89)	267664.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-5857408-2	chr13	5856908	5857908	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045891, intron 1 of 2)	intron (NR_045891, intron 1 of 2)	684.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-105162339-2	chr4	105161839	105162839	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 1 of 5)	intron (NM_080555, intron 1 of 5)	4992.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	2.0	4.5	1.0	2.0	5.0	1.0
Merged-chr5-123460560-2	chr5	123460060	123461060	+	545.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	21541.0	NM_029594	76399.0	Mm.75049	NM_029594	ENSMUSG00000029437	Il31	1700013B14Rik	interleukin 31	protein-coding	0.0	2.0	0.5	1.5	0.0	0.0
Merged-chr8-71307501-1	chr8	71307001	71308001	+	545.5	f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	MTD|LTR|ERVL-MaLR	34787.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	6.5	26.0	23.5	12.0	35.0	39.5
Merged-chr7-101295411-2	chr7	101294911	101295911	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152152, intron 7 of 16)	intron (NR_152152, intron 7 of 16)	6677.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-62069118-2	chr15	62068618	62069618	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	MIRc|SINE|MIR	29861.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19601946-2	chr7	19601446	19602446	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_125834, intron 2 of 19)	intron (NR_125834, intron 2 of 19)	2415.0	NR_125835	53609.0	Mm.20913	NM_016680	ENSMUSG00000061028	Clasrp	Clasp|Sfrs16|Srsf16|Swap2	CLK4-associating serine/arginine rich protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-138605239-2	chr3	138604737	138605737	+	545.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77969.0	NM_001313980	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-52358405-2	chr11	52357905	52358905	+	545.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2457.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-142353240-2	chr6	142352740	142353740	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183165, intron 4 of 11)	intron (NM_183165, intron 4 of 11)	7543.0	NM_183165	232491.0	Mm.490474	NM_183165	ENSMUSG00000041671	Pyroxd1	-	pyridine nucleotide-disulphide oxidoreductase domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-88045879-2	chr11	88045379	88046379	+	545.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1494.0	NM_001078167	110809.0	Mm.391719	NM_173374	ENSMUSG00000018379	Srsf1	1110054N12Rik|5730507C05Rik|6330415C05Rik|AI482334|AW491331|Asf|Sf2|Sfrs1	serine/arginine-rich splicing factor 1	protein-coding	0.0	7.0	2.0	0.0	0.0	0.5
Merged-chr19-4287686-2	chr19	4287186	4288186	+	545.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_130863, exon 20 of 22)	exon (NM_130863, exon 20 of 22)	-4549.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89387938-2	chr15	89387438	89388438	+	545.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001160178, exon 1 of 1)	exon (NM_001160178, exon 1 of 1)	3879.0	NM_001160178	546648.0		NM_001160178	ENSMUSG00000091680	Klhdc7b	EG546648|Gm306	kelch domain containing 7B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79440068-2	chr15	79439568	79440568	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359863, intron 1 of 10)	intron (NM_001359863, intron 1 of 10)	1750.0	NM_001289899	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137876220-2	chr5	137875720	137876720	+	545.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4462.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8937291-2	chr4	8936791	8937791	+	545.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	185967.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-98153597-2	chr3	98153097	98154097	+	545.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-7037.0	NM_027665	71078.0	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-101457086-2	chr11	101456586	101457586	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027320, intron 2 of 6)	intron (NM_027320, intron 2 of 6)	8674.0	NM_027320	70110.0	Mm.45558	NM_027320	ENSMUSG00000010358	Ifi35	2010008K16Rik|AW986054|IFP35|ifi-35	interferon-induced protein 35	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72349239-2	chr6	72348739	72349739	+	545.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026696, exon 4 of 4)	3' UTR (NM_026696, exon 4 of 4)	1922.0	NM_026696	68364.0	Mm.52711	NM_026696	ENSMUSG00000058706	0610030E20Rik	1500031N04Rik|2810411C16Rik|AI461894	RIKEN cDNA 0610030E20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25441475-2	chr8	25440975	25441975	+	545.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77284.0	NM_001079909	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-56619162-2	chr6	56618662	56619662	+	545.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	85537.0	NM_025520	66373.0	Mm.25642	NM_025520	ENSMUSG00000091625	Lsm5	2010208O10Rik|2310034K10Rik	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93942449-2	chr2	93941949	93942949	+	545.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	14651.0	NM_001145034	620695.0	Mm.482106	NM_001145034	ENSMUSG00000087006	Gm13889	Ag2	predicted gene 13889	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110804991-2	chr7	110804491	110805491	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009667, intron 11 of 14)	intron (NM_009667, intron 11 of 14)	32387.0	NM_009667	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-85951650-2	chr10	85951150	85952150	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145422, intron 3 of 11)	intron (NM_145422, intron 3 of 11)	6143.0	NM_145422	28088.0	Mm.9257	NM_145422	ENSMUSG00000001783	Rtcb	AI255213|AI463255|D10Wsu52e|FAAP|HSPC117	RNA 2',3'-cyclic phosphate and 5'-OH ligase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-59053944-2	chr12	59053444	59054444	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001306217, intron 1 of 4)	intron (NM_001306217, intron 1 of 4)	7528.0	NM_001306218	78232.0	Mm.290070	NM_030057	ENSMUSG00000020993	Trappc6b	5830498C14Rik|C79212	trafficking protein particle complex 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-118727950-2	chr5	118727447	118728447	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 9 of 30)	intron (NM_001347445, intron 9 of 30)	167228.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.0	2.0	0.0	0.0	0.0	1.0
Merged-chr1-86396828-2	chr1	86396328	86397328	+	545.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7467.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-77914218-2	chr9	77913718	77914718	+	545.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3147.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-52496053-2	chr2	52495553	52496553	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	62558.0	NM_146123	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76485838-2	chr12	76485338	76486338	+	545.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41341.0	NR_028520	100041694.0	Mm.259350	NR_028520	ENSMUSG00000073000	Gm10451	-	predicted gene 10451	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-9001456-2	chr5	9000956	9001956	+	545.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-4310.0	NM_023733	74114.0	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6612780-2	chr2	6612280	6613280	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 7 of 15)	intron (NM_001110232, intron 7 of 15)	108882.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-42537467-2	chr13	42536967	42537967	+	545.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143332.0	NM_001302635	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5494794-2	chr19	5494294	5495294	+	545.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007687)	TTS (NM_007687)	4339.0	NM_007687	12631.0	Mm.329655	NM_007687	ENSMUSG00000056201	Cfl1	AA959946|Cof	cofilin 1, non-muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-143016506-2	chr7	143016006	143017006	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128081, intron 5 of 6)	intron (NM_001128081, intron 5 of 6)	10847.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119341104-2	chr11	119340604	119341604	+	545.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_130886, exon 19 of 22)	exon (NM_130886, exon 19 of 22)	14406.0	NM_018822	27029.0	Mm.103788	NM_018822	ENSMUSG00000005043	Sgsh	4632406A19Rik	N-sulfoglucosamine sulfohydrolase (sulfamidase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-70636977-2	chr13	70636477	70637477	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144837, intron 1 of 18)	intron (NM_144837, intron 1 of 18)	657.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19890500-2	chr7	19890000	19891000	+	545.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2535.0	NM_177036	319930.0	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-82524805-2	chr18	82524305	82525305	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025245, intron 3 of 3)	intron (NM_001025245, intron 3 of 3)	-29658.0	NM_001025258	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-46958966-2	chr7	46958466	46959466	+	545.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040695)	promoter-TSS (NM_001040695)	-448.0	NM_001040695	54122.0	Mm.1999	NM_016855	ENSMUSG00000043262	Uevld	8430408E05Rik|Attp	UEV and lactate/malate dehyrogenase domains	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-22158206-2	chr9	22157691	22158691	+	545.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001082532, exon 2 of 2)	exon (NM_001082532, exon 2 of 2)	1345.0	NM_001082532	66268.0	Mm.28924	NM_025457	ENSMUSG00000010607	Pigyl	1810008A14Rik|PIG-Y|Pigy	phosphatidylinositol glycan anchor biosynthesis, class Y-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44989418-2	chr7	44988903	44989903	+	545.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_045266, intron 1 of 1)	ID_B1|SINE|B4	2503.0	NR_045266	100502630.0	Mm.490013	NR_045266	ENSMUSG00000087138	Gm15545	-	predicted gene 15545	ncRNA	1.0	7.5	1.0	3.5	2.0	1.5
Merged-chr19-18712288-1	chr19	18711788	18712788	+	545.0	f1_balb.idr	promoter-TSS (NM_177640)	promoter-TSS (NM_177640)	-948.0	NM_177640	225995.0	Mm.28101	NM_177640	ENSMUSG00000047044	D030056L22Rik	-	RIKEN cDNA D030056L22 gene	protein-coding	2.5	1.5	8.0	16.0	0.0	1.5
Merged-chr2-165938580-2	chr2	165938080	165939080	+	545.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-53742.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.5	1.5	0.5	0.5	1.5	0.5
Merged-chr12-4150605-1	chr12	4150105	4151105	+	545.0	f1_balb.idr	intron (NM_001159537, intron 2 of 21)	intron (NM_001159537, intron 2 of 21)	16452.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-3911404-1	chr12	3910904	3911904	+	545.0	f1_c57bl6.idr	3' UTR (NM_001271753, exon 23 of 23)	3' UTR (NM_001271753, exon 23 of 23)	19660.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32217079-2	chr2	32216579	32217579	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172661, intron 17 of 29)	intron (NM_172661, intron 17 of 29)	-19604.0	NM_145145	99011.0	Mm.31192	NM_145145	ENSMUSG00000039254	Pomt1	AI505244	protein-O-mannosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27239794-1	chr3	27239294	27240294	+	545.0	f1_balb.idr	intron (NM_178772, intron 4 of 4)	intron (NM_178772, intron 4 of 4)	56790.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110460081-2	chr9	110459581	110460581	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360306, intron 1 of 9)	intron (NM_001360306, intron 1 of 9)	16613.0	NM_001360306	270201.0	Mm.41744	NM_177771	ENSMUSG00000054792	Klhl18	A930041K15|AW545966	kelch-like 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-107058763-1	chr10	107058263	107059263	+	545.0	f1_balb.idr	intron (NM_198636, intron 2 of 10)	intron (NM_198636, intron 2 of 10)	64901.0	NM_001142804	380660.0	Mm.336072	NM_198636	ENSMUSG00000035948	Acss3	8430416H19Rik|Gm874	acyl-CoA synthetase short-chain family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-160019826-2	chr2	160019326	160020326	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040499, intron 1 of 3)	intron (NR_040499, intron 1 of 3)	3173.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-155248435-1	chr4	155247935	155248935	+	545.0	f1_balb.idr	Intergenic	B1_Mm|SINE|Alu	-1531.0	NM_001190445	67513.0	Mm.10374	NM_001190445	ENSMUSG00000073684	Faap20	2610002J02Rik	Fanconi anemia core complex associated protein 20	protein-coding	1.0	0.0	0.0	1.0	0.0	0.0
Merged-chr10-84565640-2	chr10	84565140	84566140	+	545.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11307.0	NM_146008	216198.0	Mm.296142	NM_146008	ENSMUSG00000020034	Tcp11l2	E430026E19Rik	t-complex 11 (mouse) like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-62646749-1	chr2	62646249	62647249	+	545.0	f1_balb.idr	promoter-TSS (NM_027835)	promoter-TSS (NM_027835)	-494.0	NM_001164477	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113710173-1	chr6	113709673	113710673	+	545.0	f1_c57bl6.idr	exon (NM_001033463, exon 7 of 8)	exon (NM_001033463, exon 7 of 8)	2965.0	NR_106009	102465631.0		NR_106009	ENSMUSG00000106581	Mir7042	mmu-mir-7042	microRNA 7042	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-15324262-1	chr19	15323762	15324762	+	545.0	f1_balb.idr	Intergenic	L1_Mus4|LINE|L1	600360.0	NM_001205339	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	1.5	0.0	0.0	1.5	0.0	0.0
Merged-chr19-5662817-1	chr19	5662317	5663317	+	545.0	f1_balb.idr	5' UTR (NM_011379, exon 2 of 17)	5' UTR (NM_011379, exon 2 of 17)	890.0	NM_001164482	20469.0	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr4-136121639-1	chr4	136121139	136122139	+	545.0	f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-22183.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	2.0	16.5	14.5	4.5	8.0	18.5
Merged-chr8-80773014-2	chr8	80772514	80773514	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021356, intron 8 of 9)	intron (NM_021356, intron 8 of 9)	-33555.0	NM_053124	93762.0	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-79636170-1	chr8	79635670	79636670	+	545.0	f1_balb.idr	Intergenic	Intergenic	-3506.0	NM_001256033	73945.0	Mm.34348	NM_001081164	ENSMUSG00000036990	Otud4	4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046	OTU domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-36937740-1	chr8	36937240	36938240	+	545.0	f0_balb.idr	exon (NM_001194940, exon 2 of 18)	exon (NM_001194940, exon 2 of 18)	14702.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	0.0	3.5	1.0	0.0	2.0	6.0
Merged-chr2-69822304-1	chr2	69821804	69822804	+	545.0	f1_balb.idr	promoter-TSS (NM_177784)	promoter-TSS (NM_177784)	-66.0	NM_177784	277396.0	Mm.138073	NM_177784	ENSMUSG00000042155	Klhl23	C130068N17Rik	kelch-like 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-42891063-1	chr2	42890563	42891563	+	545.0	f1_balb.idr	Intergenic	L1_Mus3|LINE|L1	-237465.0	NM_053011	94217.0	Mm.441398	NM_053011	ENSMUSG00000049252	Lrp1b	9630004P12Rik|LRP-DIT	low density lipoprotein-related protein 1B (deleted in tumors)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98777904-1	chr10	98777404	98778404	+	545.0	f1_balb.idr	Intergenic	Intergenic	-136738.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-145116993-2	chr3	145116493	145117493	+	545.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-1596.0	NM_001162539	52184.0	Mm.259105	NM_025714	ENSMUSG00000028256	Odf2l	4733401D09Rik|9630045K08Rik|D3Ertd250e	outer dense fiber of sperm tails 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172309231-1	chr1	172308731	172309731	+	545.0	f1_c57bl6.idr	Intergenic	Intergenic	-3136.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	1.0	2.5	5.0	0.0	4.0	2.5
Merged-chr9-95691555-2	chr9	95691055	95692055	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 6 of 8)	MTC|LTR|ERVL-MaLR	53927.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-116985021-1	chr12	116984521	116985521	+	545.0	f1_balb.idr	intron (NM_011215, intron 11 of 22)	intron (NM_011215, intron 11 of 22)	166248.0	NR_033538	100038689.0	Mm.445351	NR_033538	ENSMUSG00000099907	Gm10421	-	predicted gene 10421	ncRNA	9.5	4.5	0.0	0.0	1.5	6.5
Merged-chr5-137658762-1	chr5	137658262	137659262	+	545.0	f1_c57bl6.idr	intron (NM_178162, intron 6 of 11)	B2_Mm2|SINE|B2	-13048.0	NM_010571	16369.0	Mm.24486	NM_010571	ENSMUSG00000047182	Irs3	AA408304	insulin receptor substrate 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-87688140-2	chr4	87687640	87688640	+	545.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	118183.0	NM_001286158	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-72210431-2	chr18	72209931	72210931	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007831, intron 1 of 28)	Lx3A|LINE|L1	140638.0	NM_007831	13176.0	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-75277632-1	chr4	75277132	75278132	+	545.0	f1_c57bl6.idr	3' UTR (NM_025849, exon 2 of 2)	3' UTR (NM_025849, exon 2 of 2)	660.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101941592-1	chr5	101941092	101942092	+	545.0	f1_balb.idr	exon (NM_172882, exon 13 of 67)	exon (NM_172882, exon 13 of 67)	128329.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	3.0	2.5	2.0	1.0	3.5	3.5
Merged-chr19-41317438-1	chr19	41316938	41317938	+	545.0	f1_balb.idr	intron (NM_031376, intron 8 of 16)	intron (NM_031376, intron 8 of 16)	-53434.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	8.0	15.5	5.5	12.0	0.0	12.0
Merged-chr8-64880836-1	chr8	64880336	64881336	+	545.0	f0_c57.idr	Intergenic	Intergenic	-30912.0	NM_178633	77113.0	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|8530402H02Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152191256-1	chr3	152190756	152191756	+	545.0	f0_balb.idr	intron (NM_001356364, intron 1 of 2)	tRNA-Ala-GCY_|tRNA|tRNA	2589.0	NM_025926	67035.0	Mm.46746	NM_025926	ENSMUSG00000028035	Dnajb4	1700029A20Rik|2010306G19Rik|5730460G06Rik	DnaJ heat shock protein family (Hsp40) member B4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34110150-1	chr8	34109650	34110650	+	545.0	f1_balb.idr	Intergenic	L1_Rod|LINE|L1	-1438.0	NM_011722	22428.0	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	1.5	9.0	19.0	8.0	18.0	6.0
Merged-chr1-74371560-1	chr1	74371060	74372060	+	545.0	f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-3643.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38052425-2	chr2	38051925	38052925	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146122, intron 5 of 21)	intron (NM_146122, intron 5 of 21)	234959.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65931638-1	chr17	65931138	65932138	+	545.0	f1_c57bl6.idr	intron (NM_023053, intron 3 of 4)	intron (NM_023053, intron 3 of 4)	19549.0	NM_023053	65960.0	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	0.0	1.0	0.0	4.0	0.5	0.0
Merged-chr8-70547218-1	chr8	70546718	70547718	+	545.0	f1_balb.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	7543.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	4.5	7.0	1.5	0.0	14.0	6.0
Merged-chr3-36471715-2	chr3	36471215	36472215	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009673, intron 2 of 12)	intron (NM_009673, intron 2 of 12)	3809.0	NR_105976	102466786.0		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-102226177-1	chr15	102225677	102226677	+	545.0	f1_balb.idr	intron (NM_013566, intron 2 of 14)	intron (NM_013566, intron 2 of 14)	5758.0	NM_013566	16421.0	Mm.58	NM_013566	ENSMUSG00000001281	Itgb7	Ly69	integrin beta 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114204392-1	chr11	114203892	114204892	+	545.0	f1_balb.idr	Intergenic	RSINE1|SINE|B4	6134.0	NR_045930	73536.0	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-5054760-1	chr7	5054260	5055260	+	545.0	f1_balb.idr	Intergenic	Intergenic	-1392.0	NM_001290429	232821.0	Mm.482157	NM_146178	ENSMUSG00000035228	Ccdc106	BC018462	coiled-coil domain containing 106	protein-coding	0.0	0.0	0.0	1.0	0.0	1.0
Merged-chr2-163659190-2	chr2	163658690	163659690	+	545.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001039390, exon 2 of 5)	5' UTR (NM_001039390, exon 2 of 5)	732.0	NM_001164053	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10603368-2	chr19	10602868	10603868	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145496, intron 1 of 16)	MIRb|SINE|MIR	890.0	NM_145496	225913.0	Mm.374868	NM_145496	ENSMUSG00000034371	Tkfc	BC021917|Dak	triokinase, FMN cyclase	protein-coding	1.5	3.5	3.5	7.0	3.0	8.5
Merged-chr14-70859031-1	chr14	70858531	70859531	+	545.0	f0_balb.idr	intron (NR_045939, intron 2 of 3)	MTD|LTR|ERVL-MaLR	6098.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	5.5	0.0	5.5	6.5	22.5	18.5
Merged-chr8-70597355-1	chr8	70596855	70597855	+	545.0	f1_c57bl6.idr	TTS (NM_023627)	TTS (NM_023627)	2874.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	5.0	1.5	2.0	2.5	0.0	2.5
Merged-chr10-79544507-2	chr10	79544007	79545007	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316699, intron 10 of 13)	intron (NM_001316699, intron 10 of 13)	10621.0	NM_001316699	70427.0	Mm.334193	NM_027422	ENSMUSG00000042570	Mier2	2700087H15Rik|mKIAA1193	MIER family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-53402050-1	chr15	53401550	53402550	+	545.0	f1_balb.idr	Intergenic	Lx8|LINE|L1	-55867.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-134097339-2	chr1	134096839	134097839	+	545.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13903.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-85406558-2	chr9	85406058	85407058	+	545.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79408.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	1.0	0.0	5.0	0.0	0.0	0.5
Merged-chr8-13645588-2	chr8	13645088	13646088	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	31999.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	4.5	11.5	1.5	8.5	5.0	0.0
Merged-chr9-41138308-1	chr9	41137808	41138808	+	545.0	f1_balb.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	19754.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	15.0	5.0	23.0	5.0	5.5	28.0
Merged-chr5-31726358-2	chr5	31725858	31726858	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181281, intron 2 of 10)	MTB_Mm|LTR|ERVL-MaLR	28308.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56935398-1	chr19	56934898	56935898	+	545.0	f1_balb.idr	intron (NM_001177796, intron 6 of 19)	intron (NM_001177796, intron 6 of 19)	60982.0	NM_172840	240675.0	Mm.129534	NM_172840	ENSMUSG00000025082	Vwa2	Amaco	von Willebrand factor A domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-13610116-1	chr6	13609616	13610616	+	545.0	f1_c57bl6.idr	Intergenic	Intergenic	-2018.0	NM_028990	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	3.5	0.0	0.5	6.0	0.0	2.5
Merged-chr3-79534981-1	chr3	79534481	79535481	+	545.0	f1_balb.idr	intron (NM_001162999, intron 1 of 16)	B1_Mus2|SINE|Alu	32698.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr7-28331553-1	chr7	28331053	28332053	+	545.0	f1_c57bl6.idr	intron (NM_013676, intron 2 of 29)	intron (NM_013676, intron 2 of 29)	7166.0	NM_013676	20924.0	Mm.285906	NM_013676	ENSMUSG00000003435	Supt5	AL033283|AL033321|AU019549|Spt5|Supt5h	suppressor of Ty 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21317487-1	chr11	21316987	21317987	+	545.0	f1_c57bl6.idr	intron (NM_001290628, intron 22 of 22)	intron (NM_001290628, intron 22 of 22)	27188.0	NR_035454	100316753.0		NR_035454	ENSMUSG00000089555	Mir1933	mir-1933|mmu-mir-1933	microRNA 1933	ncRNA	4.5	2.0	6.5	1.5	2.0	6.0
Merged-chr9-75385065-1	chr9	75384565	75385565	+	545.0	f1_c57bl6.idr	Intergenic	Intergenic	24294.0	NM_027418	50772.0	Mm.480076	NM_015806	ENSMUSG00000042688	Mapk6	2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6	mitogen-activated protein kinase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-5018897-1	chr1	5018397	5019397	+	545.0	f0_balb.idr	promoter-TSS (NM_001290372)	promoter-TSS (NM_001290372)	-163.0	NM_001290372	58175.0	Mm.103771	NM_021374	ENSMUSG00000002459	Rgs20	2900073E09Rik|Rgsz1	regulator of G-protein signaling 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69618306-1	chr11	69617806	69618806	+	545.0	f1_balb.idr	promoter-TSS (NM_011367)	promoter-TSS (NM_011367)	-401.0	NM_011367	20415.0	Mm.1431	NM_011367	ENSMUSG00000005202	Shbg	ABP	sex hormone binding globulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-97560314-1	chr15	97559814	97560814	+	545.0	f1_c57bl6.idr	Intergenic	MT2B2|LTR|ERVL	145508.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-82903679-1	chr10	82903179	82904179	+	545.0	f1_c57bl6.idr	Intergenic	Intergenic	37053.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr14-123589752-1	chr14	123589252	123590252	+	545.0	f1_balb.idr	intron (NM_177393, intron 6 of 43)	Lx3C|LINE|L1	37392.0	NM_177393	338370.0	Mm.255348	NM_177393	ENSMUSG00000000197	Nalcn	A530023G15Rik|AI849508|Vgcnl1	sodium leak channel, non-selective	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-60826379-2	chr15	60825879	60826879	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030696, intron 1 of 2)	intron (NR_030696, intron 1 of 2)	-1299.0	NM_001162926	399603.0	Mm.411968	NM_207269	ENSMUSG00000072568	Fam84b	BF642811|D330050I23Rik	family with sequence similarity 84, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118860074-1	chr9	118859574	118860574	+	545.0	f1_c57bl6.idr	intron (NM_001113514, intron 9 of 13)	intron (NM_001113514, intron 9 of 13)	-66462.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	2.0	10.5	2.5	2.0	10.5	1.0
Merged-chr1-161889103-1	chr1	161888603	161889603	+	545.0	f1_c57bl6.idr	Intergenic	Intergenic	-12421.0	NM_001357402	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	2.0	0.5	4.0	0.5	0.0	0.0
Merged-chr10-127091940-1	chr10	127091440	127092440	+	545.0	f1_c57bl6.idr	3' UTR (NM_001301014, exon 18 of 18)	3' UTR (NM_001301014, exon 18 of 18)	13033.0	NM_001033263	216439.0	Mm.336761	NM_001033263	ENSMUSG00000025422	Agap2	AGAP-2|Centg1|PIKE|cnt-g1|mKIAA0167	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-43339323-1	chr3	43338823	43339823	+	545.0	f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	1596705.0	NM_027271	73852.0	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-122358774-1	chr1	122358274	122359274	+	545.0	f1_c57bl6.idr	Intergenic	Intergenic	153629.0	NR_151524	102638832.0	Mm.112794	NR_151524	ENSMUSG00000099960	Gm28590	-	predicted gene 28590	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4197753-2	chr19	4197253	4198253	+	545.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011237, exon 6 of 11)	exon (NM_011237, exon 6 of 11)	3850.0	NM_011237	19367.0	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99499850-2	chr15	99499350	99500350	+	545.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028224, exon 12 of 12)	3' UTR (NM_028224, exon 12 of 12)	-25120.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	0.0	4.0	0.0	0.0	0.0	0.0
Merged-chr17-45628281-2	chr17	45627781	45628781	+	545.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26179.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-45745050-1	chr17	45744550	45745550	+	545.0	f1_c57bl6.idr	intron (NR_152153, intron 1 of 4)	intron (NR_152153, intron 1 of 4)	10544.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	0.0	5.0	1.0	0.0	0.0	0.0
Merged-chr8-68362418-1	chr8	68361918	68362918	+	545.0	f0_balb.idr	intron (NM_172753, intron 8 of 9)	intron (NM_172753, intron 8 of 9)	-6041.0	NR_038189	73609.0	Mm.443247	NR_038181	ENSMUSG00000085197	1700125H03Rik	4930510D22Rik	RIKEN cDNA 1700125H03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95637931-1	chr3	95637431	95638431	+	545.0	f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	12951.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	6.0	14.5	10.0	12.5	20.0	11.5
Merged-chr2-166782640-2	chr2	166782140	166783140	+	545.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11127.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-36942947-1	chr11	36942447	36943447	+	545.0	f1_c57bl6.idr	intron (NM_011856, intron 1 of 28)	intron (NM_011856, intron 1 of 28)	1294.0	NM_001290702	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	28.0	54.0	39.5	26.5	22.0	21.0
Merged-chr6-86536194-1	chr6	86535694	86536694	+	545.0	f1_balb.idr	intron (NR_037961, intron 3 of 4)	intron (NR_037961, intron 3 of 4)	8793.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-90167945-2	chr11	90167445	90168445	+	545.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81531.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26469513-1	chr2	26469013	26470013	+	545.0	f1_balb.idr	TTS (NR_105962)	TTS (NR_105962)	606.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65728211-1	chr17	65727711	65728711	+	545.0	f0_c57.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	44541.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-86226800-1	chr11	86226300	86227300	+	545.0	f1_balb.idr	exon (NM_027421, exon 17 of 25)	exon (NM_027421, exon 17 of 25)	25440.0	NR_130958	74038.0	Mm.171304	NR_130958	ENSMUSG00000085208	Brip1os	4632419I22Rik	BRCA1 interacting protein C-terminal helicase 1, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115665805-1	chr11	115665305	115666305	+	545.0	f1_balb.idr	intron (NM_001313936, intron 2 of 5)	PB1D9|SINE|Alu	33729.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141540211-1	chr4	141539711	141540711	+	545.0	f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-1614.0	NM_019763	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	20.0	90.5	64.0	12.5	96.5	50.5
Merged-chr7-116484658-2	chr7	116484158	116485158	+	545.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19711.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88475258-1	chr4	88474758	88475758	+	545.0	f0_balb.idr	Intergenic	L1MA4|LINE|L1	-36332.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73718909-1	chr12	73718409	73719409	+	545.0	f1_c57bl6.idr	intron (NM_008856, intron 9 of 13)	ORR1B1|LTR|ERVL-MaLR	134113.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141292049-2	chr7	141291512	141292512	+	545.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007878)	promoter-TSS (NM_007878)	6.0	NM_007878	13491.0	Mm.41075	NM_007878	ENSMUSG00000025496	Drd4	AW125663|D4R|Drd-4	dopamine receptor D4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-188263341-1	chr1	188262841	188263841	+	545.0	f1_balb.idr	exon (NM_021408, exon 1 of 71)	exon (NM_021408, exon 1 of 71)	503.0	NM_021408	22283.0	Mm.331238	NM_021408	ENSMUSG00000026609	Ush2a	A930011D15Rik|A930037M10Rik|Gm676|Gm983|Mush2a|Ushrn	usherin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21264639-1	chr9	21264139	21265139	+	545.0	f1_c57bl6.idr	promoter-TSS (NM_153583)	promoter-TSS (NM_153583)	-646.0	NM_153583	235040.0	Mm.440165	NM_153583	ENSMUSG00000002820	Atg4d	9830134P12Rik|APG4-D|Apg4d|Atg4dl|Autl4	autophagy related 4D, cysteine peptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-4806735-2	chr1	4806235	4807235	+	545.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1088.0	NM_001355712	18777.0	Mm.299955	NM_008866	ENSMUSG00000025903	Lypla1	APT-1|Gm39587|LPL-I|Pla1a	lysophospholipase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-18056696-1	chr10	18056196	18057196	+	545.0	f1_c57bl6.idr	intron (NM_009048, intron 1 of 19)	intron (NM_009048, intron 1 of 19)	756.0	NM_001111065	19707.0	Mm.4479	NM_009048	ENSMUSG00000019854	Reps1	BB161292	RalBP1 associated Eps domain containing protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-155533653-1	chr1	155533153	155534153	+	545.0	f0_balb.idr	Intergenic	Intergenic	-6542.0	NR_132128	433367.0	Mm.359304	NR_132128	ENSMUSG00000073535	Gm5532	EG433367	predicted gene 5532	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-38632749-2	chr5	38632249	38633249	+	545.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52077.0	NM_001177902	100515.0	Mm.38277	NM_001081144	ENSMUSG00000046572	Zfp518b	6820424L24Rik|AA410078|AI661722|Znf518b	zinc finger protein 518B	protein-coding	5.5	0.0	1.0	3.5	0.0	0.0
Merged-chr6-99786076-1	chr6	99785576	99786576	+	545.0	f1_balb.idr	Intergenic	Intergenic	-59684.0	NM_001037539	50501.0	Mm.87365	NM_015768	ENSMUSG00000030069	Prok2	Bv8|PK2|Prok1	prokineticin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-22350258-2	chr4	22349758	22350758	+	545.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAP-d-int|LTR|ERVK	-7285.0	NR_104379	269514.0	Mm.40708	NM_172988	ENSMUSG00000040410	Fbxl4	AI836810|FBL4|FBL5	F-box and leucine-rich repeat protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-184051998-2	chr1	184051498	184052498	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022019, intron 2 of 3)	MER77B|LTR|ERVL	17617.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	1.5	0.0	1.5	1.5	0.0	1.5
Merged-chr17-24139909-1	chr17	24139409	24140409	+	545.0	f1_balb.idr	intron (NM_001286662, intron 1 of 13)	intron (NM_001286662, intron 1 of 13)	1685.0	NM_011062	18607.0	Mm.10504	NM_011062	ENSMUSG00000024122	Pdpk1	Pdk1	3-phosphoinositide dependent protein kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-3722660-2	chr16	3722160	3723160	+	545.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4536.0	NM_001161791	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-148533147-1	chr6	148532647	148533647	+	545.0	f1_balb.idr	Intergenic	B4A|SINE|B4	81162.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-17913036-1	chr16	17912536	17913536	+	545.0	f1_c57bl6.idr	TTS (NM_029469)	TTS (NM_029469)	-1688.0	NM_001081633	27886.0	Mm.256480	NM_022408	ENSMUSG00000003527	Dgcr14	AI462402|D16H22S1269E|Dgcr1|Dgsi|ES2|Es2el|Ess2	DiGeorge syndrome critical region gene 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-138911908-1	chr7	138911408	138912408	+	545.0	f1_c57bl6.idr	Intergenic	Intergenic	-2402.0	NM_009760	12176.0	Mm.378890	NM_009760	ENSMUSG00000078566	Bnip3	Nip3	BCL2/adenovirus E1B interacting protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4183975-1	chr11	4183475	4184475	+	545.0	f1_c57bl6.idr	Intergenic	Intergenic	-2858.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145292472-1	chr7	145291972	145292972	+	545.0	f1_balb.idr	Intergenic	MLTR14|LTR|ERV1	-8437.0	NM_145379	211577.0	Mm.215151	NM_145379	ENSMUSG00000031070	Mrgprf	BC019711|Mgrc|MrgF	MAS-related GPR, member F	protein-coding	6.5	10.5	12.5	19.5	45.0	27.0
Merged-chr14-59434093-1	chr14	59433593	59434593	+	545.0	f1_c57bl6.idr	intron (NM_001320720, intron 2 of 13)	MTB_Mm|LTR|ERVL-MaLR	6787.0	NM_001320725	107303348.0		NM_001320725		Gm45935	Setdb2-phf11c	predicted gene, 45935	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-112263130-2	chr2	112262630	112263630	+	545.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025403)	TTS (NM_025403)	1204.0	NM_025403	66181.0	Mm.272346	NM_025403	ENSMUSG00000027133	Nop10	1110036B12Rik|NOP10P|Nola3	NOP10 ribonucleoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-127628181-1	chr3	127627681	127628681	+	545.0	f1_balb.idr	Intergenic	Intergenic	-4955.0	NM_009718	11924.0	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding	0.0	0.0	0.5	3.0	0.0	0.0
Merged-chr7-109985274-1	chr7	109984774	109985774	+	545.0	f1_c57bl6.idr	intron (NM_153525, intron 1 of 6)	B1_Mus1|SINE|Alu	956.0	NM_153525	233724.0	Mm.43212	NM_153525	ENSMUSG00000047554	Tmem41b	1500015G02Rik|1500031M19Rik|AU018901|D7Ertd70e|D7Ertd743e	transmembrane protein 41B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-28316390-2	chr6	28315890	28316890	+	545.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-54789.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71278563-1	chr8	71278063	71279063	+	545.0	f1_c57bl6.idr	intron (NM_001142322, intron 1 of 39)	intron (NM_001142322, intron 1 of 39)	5849.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	1.5	0.0	4.0	1.5	0.0	3.0
Merged-chr16-17932165-1	chr16	17931665	17932665	+	545.0	f1_c57bl6.idr	Intergenic	Intergenic	-3946.0	NM_153150	13358.0	Mm.229291	NM_153150	ENSMUSG00000003528	Slc25a1	1300019P08Rik|2610100G11Rik|AI194714|Ctp|Dgsj|Slc20a3	solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-38826058-1	chr6	38825558	38826558	+	545.0	f0_balb.idr	intron (NM_010433, intron 1 of 14)	intron (NM_010433, intron 1 of 14)	11253.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-137864697-1	chr5	137864197	137865197	+	545.0	f1_balb.idr	Intergenic	Intergenic	-6648.0	NM_133209	170741.0	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66553946-1	chr15	66553446	66554446	+	545.0	f1_c57bl6.idr	intron (NM_172514, intron 4 of 9)	intron (NM_172514, intron 4 of 9)	7100.0	NM_172514	213068.0	Mm.132299	NM_172514	ENSMUSG00000036944	Tmem71	AI661017|E430024D12	transmembrane protein 71	protein-coding	4.5	5.0	6.0	7.5	14.5	2.0
Merged-chr11-86753260-1	chr11	86752760	86753760	+	545.0	f0_balb.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	4307.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76947250-1	chr12	76946750	76947750	+	545.0	f1_c57bl6.idr	intron (NM_001361663, intron 3 of 4)	intron (NM_001361663, intron 3 of 4)	14998.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-55365408-1	chr13	55364908	55365908	+	545.0	f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-2625.0	NM_025828	66890.0	Mm.38868	NM_025828	ENSMUSG00000021484	Lman2	1110003H06Rik|1300009F09Rik|AA408240|AL023023|AU040819|GP36B|VIP36	lectin, mannose-binding 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-40293109-1	chr12	40292609	40293609	+	545.0	f1_balb.idr	Intergenic	Intergenic	69745.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89229436-2	chr3	89228936	89229936	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013605, intron 1 of 6)	intron (NM_013605, intron 1 of 6)	380.0	NM_013605	17829.0	Mm.16193	NM_013605	ENSMUSG00000042784	Muc1	CD227|EMA|Muc-1	mucin 1, transmembrane	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69367333-1	chr11	69366833	69367833	+	545.0	f1_c57bl6.idr	intron (NM_146019, intron 1 of 39)	intron (NM_146019, intron 1 of 39)	2093.0	NM_146019	216848.0	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	6.0	21.0	15.5	6.0	21.0	15.0
Merged-chr3-129308363-1	chr3	129307863	129308863	+	545.0	f1_balb.idr	intron (NM_007934, intron 6 of 19)	intron (NM_007934, intron 6 of 19)	24386.0	NM_007934	13809.0	Mm.1193	NM_007934	ENSMUSG00000028024	Enpep	6030431M22Rik|APA|Bp-1/6C3|Ly-51|Ly51	glutamyl aminopeptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35785029-1	chr17	35784529	35785529	+	545.0	f1_c57bl6.idr	Intergenic	Intergenic	12579.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	1.5	0.0	4.5	2.5	1.5	1.0
Merged-chr19-45078785-1	chr19	45078285	45079285	+	545.0	f1_balb.idr	intron (NM_001362397, intron 4 of 4)	intron (NM_001362397, intron 4 of 4)	2698.0	NM_001362397	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-95655623-2	chr1	95655123	95656123	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159745, intron 2 of 3)	intron (NM_001159745, intron 2 of 3)	11971.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-83039543-1	chr15	83039043	83040043	+	545.0	f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-6146.0	NM_001271411	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-27914887-2	chr13	27914387	27915387	+	545.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44B|LTR|ERVK	65545.0	NM_001045532	666317.0		NM_001045532	ENSMUSG00000062551	Prl2c1	Ghd22	Prolactin family 2, subfamily c, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-41015267-1	chr13	41014767	41015767	+	545.0	f1_balb.idr	promoter-TSS (NM_025387)	promoter-TSS (NM_025387)	-983.0	NM_025387	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-31158542-1	chr9	31158042	31159042	+	545.0	f1_c57bl6.idr	exon (NM_001102456, exon 11 of 17)	exon (NM_001102456, exon 11 of 17)	-26743.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-101082034-1	chr12	101081534	101082534	+	545.0	f1_balb.idr	promoter-TSS (NR_038047)	promoter-TSS (NR_038047)	-417.0	NR_038048	319760.0	Mm.440198	NM_176997	ENSMUSG00000097121	D130020L05Rik	9430007L23Rik	RIKEN cDNA D130020L05 gene	ncRNA	16.5	14.5	7.5	8.5	5.0	9.0
Merged-chr5-74973014-1	chr5	74972514	74973514	+	545.0	f1_c57bl6.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	23820.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	0.0	0.0	0.0	0.0	4.0	0.0
Merged-chr7-127009628-1	chr7	127009128	127010128	+	545.0	f1_balb.idr	intron (NM_080638, intron 1 of 14)	PB1D7|SINE|Alu	4966.0	NM_080638	78388.0	Mm.228797	NM_080638	ENSMUSG00000030681	Mvp	2310009M24Rik|LRP|VAULT1	major vault protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-103992780-1	chr14	103992280	103993280	+	545.0	f1_balb.idr	intron (NR_045953, intron 1 of 2)	intron (NR_045953, intron 1 of 2)	34362.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84839596-1	chr2	84839096	84840096	+	545.0	f1_balb.idr	promoter-TSS (NM_024497)	promoter-TSS (NM_024497)	188.0	NM_001081349	72401.0	Mm.22716	NM_024497	ENSMUSG00000027075	Slc43a1	2610016F07Rik|AA986141|Lat3|PB39|Pov1|R00504	solute carrier family 43, member 1	protein-coding	3.5	0.0	2.5	3.5	0.0	3.5
Merged-chr3-99241319-1	chr3	99240819	99241819	+	545.0	f1_c57bl6.idr	Intergenic	CpG	-12441.0	NM_009323	21384.0	Mm.88761	NM_009323	ENSMUSG00000027868	Tbx15	Tbx14|Tbx8|de	T-box 15	protein-coding	8.0	0.0	0.5	0.0	0.0	3.0
Merged-chr19-10715645-1	chr19	10715145	10716145	+	545.0	f1_balb.idr	Intergenic	Intergenic	14877.0	NM_001361964	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-4023302-1	chr15	4022802	4023802	+	545.0	f1_balb.idr	non-coding (NR_028266, exon 2 of 2)	non-coding (NR_028266, exon 2 of 2)	-3126.0	NM_024188	67041.0	Mm.13445	NM_024188	ENSMUSG00000022186	Oxct1	2610008O03Rik|Oxct|Oxct2a|Scot-s	3-oxoacid CoA transferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-72021207-1	chr18	72020707	72021707	+	545.0	f1_balb.idr	intron (NM_007831, intron 1 of 28)	Lx|LINE|L1	329862.0	NM_007831	13176.0	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0.0	0.5	8.0	6.0	0.0	8.0
Merged-chr4-84663549-1	chr4	84663049	84664049	+	545.0	f1_c57bl6.idr	intron (NM_172870, intron 1 of 5)	Lx5c|LINE|L1	11537.0	NM_172870	242509.0	Mm.190774	NM_172870	ENSMUSG00000028487	Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-157070544-1	chr3	157070044	157071044	+	545.0	f1_c57bl6.idr	intron (NM_001039094, intron 4 of 6)	Lx2A1|LINE|L1	463546.0	NR_152231	381498.0	Mm.402095	NR_152231	ENSMUSG00000105834	4930592C13Rik	Gm1657|Gm43159	RIKEN cDNA 4930592C13 gene	ncRNA	1.5	1.5	0.0	0.0	1.5	0.0
Merged-chr17-73891843-1	chr17	73891343	73892343	+	545.0	f1_balb.idr	intron (NM_011723, intron 33 of 35)	intron (NM_011723, intron 33 of 35)	58353.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82991055-1	chr15	82990555	82991555	+	545.0	f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-31759.0	NR_037241	100526477.0		NR_037241	ENSMUSG00000092751	Mir3080	mmu-mir-3080	microRNA 3080	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-43995611-1	chr10	43995111	43996111	+	545.0	f1_c57bl6.idr	intron (NM_172393, intron 2 of 19)	Lx4B|LINE|L1	9235.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71951659-1	chr8	71951159	71952159	+	545.0	f1_c57bl6.idr	intron (NM_001164581, intron 1 of 3)	RSINE1|SINE|B4	593.0	NM_001164581	234413.0	Mm.334607	NM_001164581	ENSMUSG00000052446	Zfp961	A230105L22Rik|BC065788|mszf37|mszf55-2	zinc finger protein 961	protein-coding	10.0	21.5	33.0	13.0	24.0	23.5
Merged-chr5-30656742-2	chr5	30656242	30657242	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175675, intron 4 of 5)	intron (NM_175675, intron 4 of 5)	8803.0	NM_175675	74919.0	Mm.247985	NM_175675	ENSMUSG00000029175	Slc35f6	4930471M23Rik|5730478O19Rik|ANT2BP|P40|Tango9	solute carrier family 35, member F6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-3770124-1	chr9	3769624	3770624	+	545.0	f1_c57bl6.idr	intron (NM_001033322, intron 5 of 7)	L1_Mus2|LINE|L1	237775.0	NM_001033322	234889.0	Mm.91240	NM_001033322	ENSMUSG00000041624	Gucy1a2	6330407I18Rik|A230060L24Rik	guanylate cyclase 1, soluble, alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-145230168-1	chr5	145229668	145230668	+	545.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1547.0	NM_001083958	72611.0	Mm.206555	NM_028298	ENSMUSG00000007812	Zfp655	2700038I16Rik|9030409O18Rik|mKIAA4222	zinc finger protein 655	protein-coding	0.0	0.0	0.0	0.0	3.0	3.5
Merged-chr10-59335078-1	chr10	59334578	59335578	+	545.0	f0_balb.idr	intron (NM_001316370, intron 1 of 13)	intron (NM_001316370, intron 1 of 13)	11782.0	NM_001316370	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-77298699-1	chr7	77298199	77299199	+	545.0	f1_c57bl6.idr	Intergenic	Intergenic	1068812.0	NM_001199224	244071.0	Mm.322829	NM_172902	ENSMUSG00000025754	Agbl1	Ccp4|D430020F16|EG244071|Nna1-l1	ATP/GTP binding protein-like 1	protein-coding	0.0	2.5	0.0	0.0	0.0	0.0
Merged-chr4-130925882-2	chr4	130925382	130926382	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	MIR|SINE|MIR	12548.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-126812644-2	chr4	126812144	126813144	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035525, intron 3 of 23)	intron (NM_001035525, intron 3 of 23)	58874.0	NM_001035526	100317.0	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-138253116-1	chr1	138252616	138253616	+	545.0	f0_balb.idr	Intergenic	Lx5|LINE|L1	-20622.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97337711-2	chr7	97337210	97338210	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039039, intron 1 of 1)	intron (NM_001039039, intron 1 of 1)	5387.0	NM_001039039	622320.0	Mm.334029	NM_001039039	ENSMUSG00000044952	Kctd21	EG622320	potassium channel tetramerisation domain containing 21	protein-coding	3.0	1.0	6.5	5.5	0.5	7.0
Merged-chr5-114854884-1	chr5	114854384	114855384	+	545.0	f1_balb.idr	intron (NM_026263, intron 1 of 11)	intron (NM_026263, intron 1 of 11)	1170.0	NM_026263	67593.0	Mm.251409	NM_026263	ENSMUSG00000029564	4930519G04Rik	1700014B12Rik	RIKEN cDNA 4930519G04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77032063-1	chr10	77031563	77032563	+	545.0	f1_c57bl6.idr	promoter-TSS (NM_001199271)	promoter-TSS (NM_001199271)	-676.0	NM_001199271	20509.0	Mm.265060	NM_031196	ENSMUSG00000001436	Slc19a1	AI323572|RFC|RFC-1|RFC1	solute carrier family 19 (folate transporter), member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-152469445-1	chr3	152468945	152469945	+	545.0	f1_balb.idr	intron (NM_001081277, intron 13 of 13)	intron (NM_001081277, intron 13 of 13)	72761.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	8.5	5.5	0.5	3.0	0.0	0.0
Merged-chr9-72925324-2	chr9	72924824	72925824	+	545.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028116)	promoter-TSS (NM_028116)	-326.0	NM_028116	72135.0	Mm.273605	NM_028116	ENSMUSG00000034910	Pygo1	2600014C22Rik	pygopus 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-45649453-1	chr11	45648953	45649953	+	545.0	f0_balb.idr	Intergenic	Intergenic	-158630.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0.5	0.0	1.5	0.0	0.0	1.5
Merged-chr6-29276038-1	chr6	29275538	29276538	+	545.0	f1_balb.idr	TTS (NM_023516)	TTS (NM_023516)	3412.0	NM_023516	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29035259-1	chr17	29034759	29035759	+	545.0	f0_balb.idr	intron (NR_036613, intron 1 of 6)	B4|SINE|B4	2599.0	NR_036613	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26934829-1	chr2	26934329	26935329	+	545.0	f1_c57bl6.idr	intron (NM_198628, intron 1 of 18)	intron (NM_198628, intron 1 of 18)	760.0	NM_198628	279029.0	Mm.330079	NM_198628	ENSMUSG00000049897	Stkld1	Gm711|Sgk071	serine/threonine kinase-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-101895974-1	chr14	101895474	101896474	+	545.0	f1_c57bl6.idr	intron (NM_001347628, intron 8 of 26)	intron (NM_001347628, intron 8 of 26)	55351.0	NM_001347628	380928.0	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-12695251-2	chr5	12694751	12695751	+	545.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	312085.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-66122795-1	chr5	66122295	66123295	+	545.0	f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-24616.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	5.0	5.0	7.0	17.0	4.5	2.0
Merged-chr18-89179275-1	chr18	89178775	89179775	+	545.0	f1_balb.idr	Intergenic	Intergenic	-18152.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-61135870-1	chr10	61135370	61136370	+	545.0	f1_balb.idr	intron (NM_009163, intron 2 of 14)	intron (NM_009163, intron 2 of 14)	11814.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-16213284-1	chr16	16212784	16213784	+	545.0	f1_c57bl6.idr	promoter-TSS (NM_026163)	promoter-TSS (NM_026163)	-61.0	NM_026163	67451.0	Mm.2252	NM_026163	ENSMUSG00000041957	Pkp2	1200008D14Rik|1200012P04Rik|AA516617|Pkp2l	plakophilin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-38199623-1	chr7	38199123	38200123	+	545.0	f1_c57bl6.idr	Intergenic	Intergenic	15836.0	NM_028166	72244.0	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	2.0	2.5	2.0	6.5	9.0	3.0
Merged-chr4-53592485-1	chr4	53591985	53592985	+	545.0	f1_c57bl6.idr	intron (NM_133891, intron 15 of 15)	intron (NM_133891, intron 15 of 15)	-38986.0	NM_176966	319636.0	Mm.103464	NM_176966	ENSMUSG00000054752	Fsd1l	A230072O16Rik|Ccdc10|Csdufd1|Fsd1nl	fibronectin type III and SPRY domain containing 1-like	protein-coding	0.0	1.0	0.0	3.5	0.0	0.5
Merged-chr9-21505447-1	chr9	21504947	21505947	+	545.0	f1_c57bl6.idr	intron (NM_001357721, intron 18 of 19)	intron (NM_001357721, intron 18 of 19)	4447.0	NM_001324510	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-148312557-1	chr5	148312057	148313057	+	545.0	f1_balb.idr	intron (NM_001359511, intron 6 of 6)	B3|SINE|B2	47340.0	NM_001359505	77521.0	Mm.244177	NM_029920	ENSMUSG00000029651	Mtus2	5730592G18Rik|A730013O20Rik|AU067634|C130038G02Rik|Cazip|Gm763|mKIAA0774	microtubule associated tumor suppressor candidate 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-27344866-1	chr16	27344366	27345366	+	545.0	f1_c57bl6.idr	intron (NM_198112, intron 3 of 4)	intron (NM_198112, intron 3 of 4)	25373.0	NM_198166	224065.0	Mm.326918	NM_198166	ENSMUSG00000056423	Uts2b	Gm538|U2B|Urp|Uts2d	urotensin 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43470529-1	chr7	43470029	43471029	+	545.0	f1_balb.idr	intron (NM_001290316, intron 9 of 9)	B3|SINE|B2	7296.0	NM_001290316	75690.0	Mm.30200	NM_001290316	ENSMUSG00000070604	Vsig10l	-	V-set and immunoglobulin domain containing 10 like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-116182938-2	chr4	116182438	116183438	+	545.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9566.0	NM_001099295	67323.0	Mm.45442	NM_001099295	ENSMUSG00000078593	1700042G07Rik	-	RIKEN cDNA 1700042G07 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-119002519-2	chr4	119002019	119003019	+	545.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40552.0	NM_133892	100470.0	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-49635420-2	chr4	49634920	49635920	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_182999, intron 3 of 20)	L2|LINE|L2	-3205.0	NM_001356401	109331.0	Mm.24765	NM_182999	ENSMUSG00000028309	Rnf20	4833430L21Rik|AW540162|C79397|mKIAA4116	ring finger protein 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77912611-2	chr10	77912111	77913111	+	545.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_138301, exon 32 of 34)	exon (NM_138301, exon 32 of 34)	-10075.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-34530228-1	chr8	34529728	34530728	+	545.0	f0_balb.idr	Intergenic	Intergenic	110088.0	NR_040706	330734.0	Mm.149998	NR_040706	ENSMUSG00000109819	B930018H19Rik	B930018H19	RIKEN cDNA B930018H19 gene	ncRNA	2.0	0.0	1.0	5.5	4.0	9.5
Merged-chr8-61923044-1	chr8	61922544	61923544	+	545.0	f1_balb.idr	Intergenic	MLTR11B|LTR|ERVK	-5043.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17670396-1	chr6	17669896	17670896	+	545.0	f1_balb.idr	Intergenic	Intergenic	-23598.0	NM_001289626	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-79820922-2	chr7	79820422	79821422	+	545.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008486)	TTS (NM_008486)	10195.0	NM_008589	17293.0	Mm.31472	NM_008589	ENSMUSG00000030543	Mesp2	bHLHc6	mesoderm posterior 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-172498626-1	chr1	172498126	172499126	+	545.0	f1_c57bl6.idr	3' UTR (NM_001145800, exon 21 of 21)	3' UTR (NM_001145800, exon 21 of 21)	-1620.0	NM_178598	21346.0	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	0.0	1.0	0.0	18.5	0.0	0.0
Merged-chr12-93847424-1	chr12	93846924	93847924	+	545.0	f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-79914.0	NR_106201	102466888.0		NR_106201	ENSMUSG00000098931	Mir8099-2	Gm27692|mmu-mir-8099-2	microRNA 8099-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166064890-1	chr2	166064390	166065390	+	545.0	f1_balb.idr	intron (NM_008679, intron 17 of 22)	(TG)n|Simple_repeat|Simple_repeat	72253.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.0	2.5	0.0	0.0	3.0	2.5
Merged-chr6-97204897-2	chr6	97204397	97205397	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111106, intron 1 of 16)	intron (NM_001111106, intron 1 of 16)	750.0	NM_001301857	22200.0	Mm.277626	NM_011666	ENSMUSG00000030061	Uba3	A830034N06Rik|AI256736|AI848246|AW546539|Ube1c	ubiquitin-like modifier activating enzyme 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-27679858-1	chr15	27679358	27680358	+	545.0	f1_balb.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	1684.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180424549-1	chr1	180424049	180425049	+	545.0	f1_c57bl6.idr	TTS (NM_001081175)	TTS (NM_001081175)	58955.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102424185-1	chr11	102423685	102424685	+	545.0	f1_c57bl6.idr	Intergenic	MER45A|DNA|hAT-Tip100	-6137.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-154293997-2	chr4	154293497	154294497	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112744, intron 1 of 14)	intron (NM_001112744, intron 1 of 14)	5898.0	NM_001112744	230972.0	Mm.38481	NM_001112744	ENSMUSG00000029032	Arhgef16	-	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding	0.0	2.0	0.0	0.0	5.0	0.0
Merged-chr7-128232518-1	chr7	128232018	128233018	+	545.0	f1_c57bl6.idr	Intergenic	RMER21A|LTR|ERV1	-4839.0	NM_146205	233912.0	Mm.475117	NM_146205	ENSMUSG00000042178	Armc5	AW049683|BC032200	armadillo repeat containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30705668-1	chr2	30705168	30706168	+	545.0	f0_balb.idr	Intergenic	Intergenic	-15542.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-144783742-2	chr7	144783242	144784242	+	545.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45150.0	NM_001242349	101772.0	Mm.26700	NM_178642	ENSMUSG00000031075	Ano1	Tmem16a	anoctamin 1, calcium activated chloride channel	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141111599-1	chr4	141111099	141112099	+	545.0	f1_c57bl6.idr	intron (NM_177867, intron 13 of 14)	ORR1A4|LTR|ERVL-MaLR	23254.0	NM_177867	329972.0	Mm.247201	NM_177867	ENSMUSG00000045004	Spata21	4933414G08	spermatogenesis associated 21	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-66921167-1	chr9	66920667	66921667	+	545.0	f1_balb.idr	Intergenic	Intergenic	-1462.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-81230712-2	chr10	81230212	81231212	+	545.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178662)	promoter-TSS (NM_178662)	67.0	NM_178662	16467.0	Mm.127681	NM_178662	ENSMUSG00000034958	Atcay	3322401A10Rik|BB077577|BNIP-H|CLAC|hes|ji	ataxia, cerebellar, Cayman type	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-106894326-2	chr8	106893826	106894826	+	545.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145412)	promoter-TSS (NM_145412)	686.0	NM_001358982	21771.0	Mm.10665	NM_011574	ENSMUSG00000041438	Utp4	Cirh1a|Cirhin|Naic|Teg-292|Tex292	UTP4 small subunit processome component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153110635-1	chr2	153110135	153111135	+	545.0	f1_balb.idr	intron (NM_001172117, intron 1 of 12)	MER5A|DNA|hAT-Charlie	2167.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	24.0	66.0	41.5	44.0	46.5	30.0
Merged-chr2-31768784-1	chr2	31768284	31769284	+	545.0	f0_balb.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	8611.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122886723-1	chr8	122886223	122887223	+	545.0	f1_balb.idr	intron (NM_001081379, intron 11 of 12)	intron (NM_001081379, intron 11 of 12)	38349.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102066611-2	chr7	102066111	102067111	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_104582, intron 1 of 21)	B3|SINE|B2	1120.0	NM_001286689	102443350.0	Mm.292904	NM_001286689	ENSMUSG00000099481	Xndc1	Xndr	Xrcc1 N-terminal domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-134224887-1	chr5	134224387	134225387	+	545.0	f1_c57bl6.idr	intron (NM_010876, intron 7 of 10)	intron (NM_010876, intron 7 of 10)	4738.0	NM_001286037	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-3770189-1	chr13	3769689	3770689	+	545.0	f1_c57bl6.idr	Intergenic	Intergenic	34129.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36043565-1	chr17	36043065	36044065	+	545.0	f1_c57bl6.idr	promoter-TSS (NM_001347382)	promoter-TSS (NM_001347382)	604.0	NM_001034909	547347.0	Mm.484641	NM_001034909	ENSMUSG00000073407	Gm6034	EG547347|H2-gs14-2	predicted gene 6034	protein-coding	27.5	130.5	56.0	42.0	135.5	92.0
Merged-chr17-80978477-1	chr17	80977977	80978977	+	545.0	f1_c57bl6.idr	intron (NM_026516, intron 1 of 3)	intron (NM_026516, intron 1 of 3)	33845.0	NM_026516	68027.0	Mm.357108	NM_026516	ENSMUSG00000024245	Tmem178	2810417M05Rik|Tmem178a	transmembrane protein 178	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111388702-1	chr10	111388202	111389202	+	545.0	f1_c57bl6.idr	Intergenic	Intergenic	-84525.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129067374-2	chr4	129066874	129067874	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 1 of 8)	intron (NM_029219, intron 1 of 8)	9103.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30620348-1	chr7	30619848	30620848	+	545.0	f1_c57bl6.idr	intron (NM_025628, intron 3 of 3)	intron (NM_025628, intron 3 of 3)	5803.0	NM_025628	110323.0	Mm.400	NM_025628	ENSMUSG00000036751	Cox6b1	2010000G05Rik|Cox6b	cytochrome c oxidase, subunit VIb polypeptide 1	protein-coding	2.0	0.5	1.5	0.0	4.5	3.0
Merged-chr8-3705918-1	chr8	3705418	3706418	+	545.0	f1_c57bl6.idr	Intergenic	Intergenic	-11744.0	NM_001253743	14128.0	Mm.1233	NM_013517	ENSMUSG00000005540	Fcer2a	CD23|Fce2|Fcer2|Ly-42	Fc receptor, IgE, low affinity II, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180988329-1	chr1	180987829	180988829	+	545.0	f1_balb.idr	Intergenic	Intergenic	29240.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-7099093-1	chr1	7098593	7099593	+	545.0	f0_c57.idr	intron (NM_183028, intron 1 of 5)	intron (NM_183028, intron 1 of 5)	10173.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127166231-1	chr10	127165731	127166731	+	545.0	f1_balb.idr	intron (NM_027739, intron 1 of 9)	CpG	400.0	NM_001358578	14421.0	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-8003307-2	chr14	8002807	8003807	+	544.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331064, intron 1 of 8)	intron (NM_001331064, intron 1 of 8)	341.0	NM_001331064	66082.0	Mm.181473	NM_025341	ENSMUSG00000025277	Abhd6	0610041D24Rik|AA673485|AV065425	abhydrolase domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117272141-2	chr10	117271641	117272641	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10131.0	NM_017372	17105.0	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-47293247-2	chr17	47292747	47293747	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001097623, intron 5 of 19)	RSINE1|SINE|B4	63017.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0.0	0.0	0.0	1.5	1.5	0.0
Merged-chr19-10174054-2	chr19	10173554	10174554	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8834.0	NM_146094	76267.0	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	4.5	13.5	11.0	0.0	15.0	10.0
Merged-chr9-101097838-2	chr9	101097338	101098338	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001100451, intron 1 of 1)	intron (NM_001100451, intron 1 of 1)	23076.0	NM_001100451	77853.0	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	MSL complex subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-30930286-2	chr5	30929786	30930786	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310524, intron 6 of 8)	intron (NM_001310524, intron 6 of 8)	8727.0	NM_001310524	16548.0	Mm.22451	NM_008439	ENSMUSG00000029162	Khk	-	ketohexokinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-48444216-2	chr11	48443716	48444716	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-356144.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27535337-2	chr7	27534837	27535837	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317355, intron 11 of 13)	B4A|SINE|B4	12076.0	NM_001033315	233020.0	Mm.429716	NM_001033315	ENSMUSG00000040424	Hipk4	Gm162	homeodomain interacting protein kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-95809427-2	chr8	95808927	95809927	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_015574, intron 1 of 3)	intron (NR_015574, intron 1 of 3)	-1965.0	NM_001205226	234594.0	Mm.259220	NM_153164	ENSMUSG00000036550	Cnot1	6030411K04Rik|AA815922|D830048B13	CCR4-NOT transcription complex, subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-6009457-2	chr17	6008957	6009957	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357667, intron 7 of 24)	Tigger17c|DNA|TcMar-Tigger	1877.0	NM_001290698	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114687178-2	chr5	114686678	114687678	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019821, intron 1 of 4)	intron (NM_019821, intron 1 of 4)	3757.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-46149815-2	chr9	46149315	46150315	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 3 of 24)	intron (NM_027498, intron 3 of 24)	-78815.0	NM_009692	11806.0	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102685969-2	chr14	102685469	102686469	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	296663.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27327725-2	chr17	27327225	27328225	+	544.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106075)	promoter-TSS (NR_106075)	-660.0	NR_106075	102466818.0		NR_106075	ENSMUSG00000099237	Mir7216	Gm27555|mmu-mir-7216	microRNA 7216	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63468296-2	chr14	63467796	63468796	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31902.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79329076-2	chr15	79328576	79329576	+	544.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199024)	promoter-TSS (NM_001199024)	-705.0	NM_001199023	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-130707280-2	chr2	130706780	130707780	+	544.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001311147, exon 37 of 37)	3' UTR (NM_001311147, exon 37 of 37)	-9761.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	0.0	3.0	1.5	0.5	7.5	1.5
Merged-chr19-10272367-2	chr19	10271867	10272867	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	-31619.0	NM_001033481	225908.0	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-51535434-2	chr11	51534934	51535934	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153393, intron 5 of 28)	B3|SINE|B2	-49323.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30692331-2	chr14	30691831	30692831	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22518.0	NM_019460	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	5.0	0.0	0.0	1.5	0.5	0.0
Merged-chr12-111374136-2	chr12	111373636	111374636	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183016, intron 1 of 36)	B3|SINE|B2	3582.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-75461960-2	chr17	75461460	75462460	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166493, intron 1 of 16)	CT-rich|Low_complexity|Low_complexity	-3578.0	NM_001360103	240168.0	Mm.329203	NM_207246	ENSMUSG00000071042	Rasgrp3	BC066069|Gm327	RAS, guanyl releasing protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-100441972-2	chr4	100441472	100442472	+	544.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013845, exon 9 of 9)	exon (NM_013845, exon 9 of 9)	-36895.0	NM_001033773	381534.0	Mm.318133	NM_001033773	ENSMUSG00000069733	Ube2u	-	ubiquitin-conjugating enzyme E2U (putative)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-66678505-2	chr18	66678005	66679005	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	174327.0	NR_040528	100503565.0	Mm.98256	NR_040528		Gm9926	-	predicted gene 9926	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118506749-2	chr11	118506249	118507249	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024931, intron 5 of 14)	LTR16C|LTR|ERVL	29917.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135426404-2	chr5	135425904	135426904	+	544.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_146001, exon 23 of 31)	exon (NM_146001, exon 23 of 31)	-31858.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-121985459-2	chr3	121984959	121985959	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356524, intron 3 of 22)	MIRb|SINE|MIR	17653.0	NM_001356524	214137.0	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-106803296-2	chr5	106802796	106803796	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106466.0	NM_026856	52397.0	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	0.0	0.0	2.0	0.0	0.0	2.0
Merged-chr17-83975991-2	chr17	83975491	83976491	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22561.0	NR_130994	78148.0	Mm.243918	NR_130994		8430430B14Rik	-	RIKEN cDNA 8430430B14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-14443169-2	chr19	14442669	14443669	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4663.0	NR_003027	19862.0		NR_003027	ENSMUSG00000095132	Rnu6	-	U6 small nuclear RNA	snRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98798078-2	chr11	98797578	98798578	+	544.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361934)	promoter-TSS (NM_001361934)	-576.0	NM_001361933	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-30115685-2	chr12	30115185	30116185	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009417, intron 5 of 16)	intron (NM_009417, intron 5 of 16)	16939.0	NM_009417	22018.0	Mm.4991	NM_009417	ENSMUSG00000020673	Tpo	-	thyroid peroxidase	protein-coding	2.5	2.0	0.0	0.0	2.5	1.0
Merged-chr2-75907324-2	chr2	75906824	75907824	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172666, intron 17 of 19)	intron (NM_172666, intron 17 of 19)	31138.0	NM_028235	72421.0	Mm.275109	NM_028235	ENSMUSG00000075273	Ttc30b	2510042P03Rik|Tcc30b	tetratricopeptide repeat domain 30B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-23911668-2	chr18	23911168	23912168	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43020.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-75067558-2	chr5	75067058	75068058	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8043.0	NM_133256	14843.0	Mm.218752	NM_133256	ENSMUSG00000035946	Gsx2	Gsh-2|Gsh2	GS homeobox 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-34327836-2	chr7	34327336	34328336	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-42227.0	NM_172741	233103.0	Mm.491097	NM_172741	ENSMUSG00000066571	4931406P16Rik	AA553327|mKIAA0355	RIKEN cDNA 4931406P16 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87807932-2	chr6	87807432	87808432	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_104478, intron 1 of 2)	intron (NR_104478, intron 1 of 2)	1825.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-87120908-2	chr6	87120408	87121408	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	16162.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	2.0	4.0	0.0	0.0	0.0	0.0
Merged-chr11-78355670-2	chr11	78355170	78356170	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8960.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-80008712-2	chr7	80008212	80009212	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-16102.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122130343-2	chr5	122129843	122130843	+	544.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001289809, exon 2 of 12)	5' UTR (NM_001289809, exon 2 of 12)	4550.0	NM_001289811	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	0.0	0.0	0.0	2.0	3.5	2.5
Merged-chr17-79781046-2	chr17	79780546	79781546	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66005.0	NM_009994	13078.0	Mm.214016	NM_009994	ENSMUSG00000024087	Cyp1b1	CP1B|P4501b1	cytochrome P450, family 1, subfamily b, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-38005594-2	chr19	38005094	38006094	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 3 of 53)	MER31A|LTR|ERV1	37983.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	0.5	0.0	0.0	0.0	4.0	0.0
Merged-chr7-44253314-2	chr7	44252814	44253814	+	544.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025880)	TTS (NM_025880)	3164.0	NR_028533	100217433.0		NR_028533	ENSMUSG00000095472	Snord88a	MBII-211	small nucleolar RNA, C/D box 88A	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56158470-2	chr17	56157970	56158970	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4021.0	NM_025566	66443.0	Mm.2312	NM_025566	ENSMUSG00000044469	Tnfaip8l1	2600017J23Rik|TIPE1	tumor necrosis factor, alpha-induced protein 8-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-13026571-2	chr15	13026071	13027071	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	147104.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111712713-2	chr12	111712213	111713213	+	544.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026511)	promoter-TSS (NM_026511)	240.0	NM_001324481	70369.0	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-142623465-2	chr3	142622965	142623965	+	544.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_105802)	TTS (NR_105802)	481.0	NR_105802	102465200.0		NR_105802	ENSMUSG00000098871	Mir6381	Gm27963|mmu-mir-6381	microRNA 6381	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51419841-2	chr13	51419341	51420341	+	544.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010101, exon 2 of 2)	exon (NM_010101, exon 2 of 2)	11223.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85506302-2	chr12	85505802	85506802	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	32412.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73058819-2	chr15	73058319	73059319	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164641, intron 1 of 17)	intron (NM_001164641, intron 1 of 17)	2385.0	NM_001164641	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	0.5	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96171618-2	chr3	96171118	96172118	+	544.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153053)	promoter-TSS (NM_153053)	-888.0	NM_153053	107701.0	Mm.219671	NM_153053	ENSMUSG00000068856	Sf3b4	SF3b49|SF3b50|Sap49	splicing factor 3b, subunit 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153169257-2	chr2	153168757	153169757	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	intron (NM_133847, intron 1 of 17)	7956.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166291564-2	chr2	166291064	166292064	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033467, intron 2 of 2)	intron (NR_033467, intron 2 of 2)	17656.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6859011-2	chr19	6858511	6859511	+	544.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081291)	promoter-TSS (NM_001081291)	-800.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	7.5	32.5	22.0	11.5	34.0	22.5
Merged-chr14-122643310-2	chr14	122642810	122643810	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 8 of 24)	L1M2|LINE|L1	108982.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-121423691-2	chr10	121423191	121424191	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	52559.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163820744-2	chr2	163820244	163821244	+	544.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016873)	promoter-TSS (NM_016873)	-90.0	NM_016873	22403.0	Mm.13828	NM_016873	ENSMUSG00000027656	Wisp2	Ccn5|Crgr4|Ctgfl|Rcop1	WNT1 inducible signaling pathway protein 2	protein-coding	0.0	2.5	0.5	0.5	0.0	0.0
Merged-chr12-52121026-2	chr12	52120526	52121526	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029760, intron 3 of 10)	intron (NM_029760, intron 3 of 10)	23280.0	NM_029760	76826.0	Mm.244781	NM_029760	ENSMUSG00000035142	Nubpl	2410170E07Rik	nucleotide binding protein-like	protein-coding	4.0	4.0	7.5	4.0	4.0	3.5
Merged-chr9-66298041-2	chr9	66297541	66298541	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-52409.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-32595183-2	chr19	32594683	32595683	+	544.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001201470)	promoter-TSS (NM_001201470)	-532.0	NM_001201470	23972.0	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119820162-2	chr8	119819662	119820662	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 3 of 3)	intron (NM_028071, intron 3 of 3)	20417.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-76118615-3	chr5	76118120	76119120	+	544.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21653.0	NM_020611	57357.0	Mm.289446	NM_020611	ENSMUSG00000029233	Srd5a3	1110025P14Rik|A430076C09|AV364670|AW987574|D730040M03Rik|H5ar|S5AR 3|Srd5a2l	steroid 5 alpha-reductase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-37801915-2	chr13	37801396	37802396	+	544.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24142.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	16.5	34.0	16.5	7.5	18.0	18.5
Merged-chr13-6579096-1	chr13	6578596	6579596	+	544.0	f1_balb.idr	TTS (NM_001291071)	TTS (NM_001291071)	30939.0	NM_001360106	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122923656-1	chr8	122923156	122924156	+	544.0	f0_balb.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	75282.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	17.0	44.5	18.5	20.0	38.5	15.0
Merged-chr16-58702486-1	chr16	58701986	58702986	+	544.0	f0_balb.idr	Intergenic	Intergenic	16238.0	NM_001162955	71223.0	Mm.359970	NM_001162955	ENSMUSG00000047293	Gpr15	4933439K08Rik	G protein-coupled receptor 15	protein-coding	0.0	4.0	0.0	0.0	2.0	0.0
Merged-chr5-122642772-1	chr5	122642272	122643272	+	544.0	f1_balb.idr	Intergenic	Intergenic	-1139.0	NM_001038839	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-67026543-2	chr10	67026043	67027043	+	544.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110511, intron 2 of 6)	intron (NR_110511, intron 2 of 6)	21468.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-27391175-1	chr16	27390675	27391675	+	544.0	f1_balb.idr	intron (NM_001025615, intron 1 of 9)	intron (NM_001025615, intron 1 of 9)	2219.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-10997624-1	chr15	10997124	10998124	+	544.0	f1_c57bl6.idr	TTS (NM_008537)	TTS (NM_008537)	-3097.0	NM_053077	22293.0	Mm.138278	NM_053077	ENSMUSG00000022243	Slc45a2	Aim-1|Aim1|Dbr|Matp|Oca4|blanc-sale|bls|uw	solute carrier family 45, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97143326-1	chr11	97142826	97143826	+	544.0	f1_balb.idr	intron (NM_198100, intron 6 of 8)	intron (NM_198100, intron 6 of 8)	3093.0	NR_106094	102466822.0		NR_106094	ENSMUSG00000099286	Mir7235	Gm27986|mmu-mir-7235	microRNA 7235	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-77897615-2	chr16	77897115	77898115	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	251342.0	NR_029540	723952.0		NR_029540	ENSMUSG00000065472	Mir125b-2	Mirn125b-2|mir-125b-2	microRNA 125b-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-16828871-1	chr16	16828371	16829371	+	544.0	f1_balb.idr	intron (NM_015773, intron 2 of 10)	intron (NM_015773, intron 2 of 10)	492.0	NM_015773	50525.0	Mm.31701	NM_015773	ENSMUSG00000022783	Spag6l	PF16|Spag6|Spag6l1	sperm associated antigen 6-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-121793384-1	chr8	121792884	121793884	+	544.0	f1_c57bl6.idr	Intergenic	Intergenic	36185.0	NM_145605	234825.0	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	33.0	41.5	36.0	21.0	3.0	3.0
Merged-chr3-69041526-1	chr3	69041026	69042026	+	544.0	f1_c57bl6.idr	intron (NM_025863, intron 2 of 2)	intron (NM_025863, intron 2 of 2)	3216.0	NM_025863	66949.0	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	8.5	5.5	6.0	14.0	9.0	13.5
Merged-chr7-49599852-2	chr7	49599352	49600352	+	544.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 36 of 37)	intron (NM_175272, intron 36 of 37)	36983.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-19087413-1	chr6	19086913	19087913	+	544.0	f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	191430.0	NR_126084	74725.0	Mm.387798	NR_126084	ENSMUSG00000107217	4930524B17Rik	-	RIKEN cDNA 4930524B17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-34671190-2	chr14	34670690	34671690	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2738.0	NM_001004436	218914.0	Mm.27957	NM_001004436	ENSMUSG00000041408	Wapl	A530089A20Rik|BC037674|DIF-2|FOE|Wapal	WAPL cohesin release factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21174665-1	chr11	21174165	21175165	+	544.0	f1_c57bl6.idr	Intergenic	Intergenic	-64367.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	1.0	0.0	0.0	0.0	1.5	0.0
Merged-chr4-130818645-1	chr4	130818145	130819145	+	544.0	f1_c57bl6.idr	exon (NM_011520, exon 3 of 5)	exon (NM_011520, exon 3 of 5)	26108.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46109750-1	chr8	46109250	46110250	+	544.0	f1_balb.idr	intron (NM_207213, intron 2 of 17)	intron (NM_207213, intron 2 of 17)	14396.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127870623-1	chr7	127870123	127871123	+	544.0	f1_balb.idr	intron (NM_146259, intron 1 of 2)	B2_Mm2|SINE|B2	5019.0	NM_001362192	244219.0	Mm.207872	NM_146259	ENSMUSG00000049728	Zfp668	BC030314|E130018B19Rik|Znf668	zinc finger protein 668	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44849651-1	chr9	44849151	44850151	+	544.0	f1_balb.idr	exon (NM_001357549, exon 3 of 36)	exon (NM_001357549, exon 3 of 36)	31623.0	NM_001357549	214162.0	Mm.2389	NM_001081049	ENSMUSG00000002028	Kmt2a	6430520K01|ALL-1|All1|Cxxc7|HRX|HTRX1|Mll|Mll1|mKIAA4050	lysine (K)-specific methyltransferase 2A	protein-coding	0.0	0.0	1.5	0.0	0.0	2.0
Merged-chr7-19097889-1	chr7	19097389	19098389	+	544.0	f1_c57bl6.idr	3' UTR (NM_011383, exon 3 of 3)	3' UTR (NM_011383, exon 3 of 3)	3345.0	NM_011383	20475.0	Mm.3410	NM_011383	ENSMUSG00000040841	Six5	Dmahp|MDMAHP|TrexBF	sine oculis-related homeobox 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97794553-1	chr7	97794053	97795053	+	544.0	f1_balb.idr	intron (NM_001357364, intron 1 of 14)	intron (NM_001357364, intron 1 of 14)	6012.0	NM_001357364	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	13.5	53.5	39.5	45.0	65.5	63.5
Merged-chr13-83731351-1	chr13	83730851	83731851	+	544.0	f1_c57bl6.idr	intron (NR_152244, intron 2 of 4)	CpG	-1142.0	NR_152246	320203.0	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik|ECONEXIN|EyeLinc1|Visc-1	RIKEN cDNA C130071C03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-100508779-1	chr5	100508279	100509279	+	544.0	f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-8140.0	NM_001359914	231506.0	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	1.5	0.0	1.5	0.0	0.0	0.5
Merged-chr2-156193616-1	chr2	156193116	156194116	+	544.0	f1_c57bl6.idr	Intergenic	Intergenic	-3031.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	15.0	7.0	4.5	12.0	11.5	3.5
Merged-chr7-26248184-2	chr7	26247684	26248684	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18647.0	NM_001167540	100312477.0	Mm.480246	NM_001167540	ENSMUSG00000046130	Vmn1r184	-	vomeronasal 1 receptor, 184	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-4888861-1	chr16	4888361	4889361	+	544.0	f1_balb.idr	intron (NM_001357062, intron 1 of 17)	B1_Mur2|SINE|Alu	2761.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-114829837-2	chr13	114829337	114830337	+	544.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013826)	TTS (NM_013826)	11600.0	NM_001113374	17434.0	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-87122588-1	chr11	87122088	87123088	+	544.0	f1_balb.idr	3' UTR (NM_025377, exon 4 of 4)	3' UTR (NM_025377, exon 4 of 4)	-4487.0	NM_197987	68729.0	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-19005434-1	chr10	19004934	19005934	+	544.0	f0_balb.idr	intron (NM_001166402, intron 5 of 7)	intron (NM_001166402, intron 5 of 7)	6529.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-70035865-1	chr10	70035365	70036365	+	544.0	f0_c57.idr	Intergenic	MTD|LTR|ERVL-MaLR	-61256.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116128951-2	chr11	116128451	116129451	+	544.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178802, intron 1 of 5)	B1_Mur1|SINE|Alu	2177.0	NM_178802	338364.0	Mm.439976	NM_178802	ENSMUSG00000054517	Trim65	4732463G12Rik	tripartite motif-containing 65	protein-coding	0.0	0.0	0.5	1.0	0.5	0.0
Merged-chr2-11710109-1	chr2	11709609	11710609	+	544.0	f1_balb.idr	intron (NM_001271499, intron 1 of 6)	B4A|SINE|B4	4397.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-21916110-1	chr3	21915610	21916610	+	544.0	f0_balb.idr	Intergenic	Intergenic	-160542.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30108293-1	chr2	30107793	30108793	+	544.0	f1_c57bl6.idr	exon (NM_001290503, exon 6 of 16)	exon (NM_001290503, exon 6 of 16)	-14658.0	NM_001037762	66220.0	Mm.22538	NM_025428	ENSMUSG00000015335	Zdhhc12	1190004A01Rik	zinc finger, DHHC domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63647690-1	chr9	63647190	63648190	+	544.0	f1_c57bl6.idr	3' UTR (NM_016769, exon 9 of 9)	3' UTR (NM_016769, exon 9 of 9)	45044.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80264549-1	chr12	80264049	80265049	+	544.0	f1_c57bl6.idr	Intergenic	Intergenic	-4168.0	NM_001346669	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167298918-1	chr2	167298418	167299418	+	544.0	f1_c57bl6.idr	3' UTR (NM_019835, exon 9 of 9)	3' UTR (NM_019835, exon 9 of 9)	50260.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-89426540-1	chr3	89426040	89427040	+	544.0	f1_c57bl6.idr	exon (NM_001113331, exon 8 of 12)	exon (NM_001113331, exon 8 of 12)	-3674.0	NM_001293766	68911.0	Mm.22521	NM_026869	ENSMUSG00000047824	Pygo2	1190004M21Rik	pygopus 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-8420818-1	chr6	8420318	8421318	+	544.0	f0_balb.idr	intron (NM_001302353, intron 4 of 4)	intron (NM_001302353, intron 4 of 4)	88343.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116589442-1	chr11	116588942	116589942	+	544.0	f1_balb.idr	Intergenic	Intergenic	-4245.0	NR_033223	11298.0	Mm.42233	NM_009591	ENSMUSG00000020804	Aanat	AA-NAT|Nat-2|Nat4|Snat	arylalkylamine N-acetyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-64614633-1	chr1	64614133	64615133	+	544.0	f1_c57bl6.idr	intron (NM_025964, intron 2 of 2)	intron (NM_025964, intron 2 of 2)	2535.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84995996-1	chr8	84995496	84996496	+	544.0	f1_balb.idr	intron (NM_133255, intron 11 of 21)	intron (NM_133255, intron 11 of 21)	5401.0	NM_001167991	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	0.0	9.5	2.5	0.0	6.0	2.0
Merged-chr7-81310676-1	chr7	81310176	81311176	+	544.0	f1_balb.idr	intron (NM_008803, intron 11 of 21)	intron (NM_008803, intron 11 of 21)	34558.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-112270406-1	chr10	112269906	112270906	+	544.0	f0_balb.idr	promoter-TSS (NM_001359752)	promoter-TSS (NM_001359752)	-715.0	NM_001359752	268345.0	Mm.336242	NM_001025581	ENSMUSG00000035681	Kcnc2	AW047325|B230117I07|KShIIIA|Kv3.2	potassium voltage gated channel, Shaw-related subfamily, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-49416322-1	chr2	49415822	49416822	+	544.0	f1_balb.idr	Intergenic	B1F2|SINE|Alu	-35164.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-172459952-1	chr2	172459452	172460452	+	544.0	f1_balb.idr	intron (NM_025542, intron 5 of 8)	intron (NM_025542, intron 5 of 8)	-1356.0	NM_001039560	654821.0	Mm.389337	NM_001039560	ENSMUSG00000074569	Gcnt7	A330041C17Rik|gnt	glucosaminyl (N-acetyl) transferase family member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-17845406-1	chr17	17844906	17845906	+	544.0	f0_c57.idr	intron (NM_008215, intron 4 of 4)	B3|SINE|B2	9782.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	4.0	1.5	0.0	0.0	0.0	2.5
Merged-chr2-32881163-1	chr2	32880663	32881663	+	544.0	f1_c57bl6.idr	intron (NM_146119, intron 1 of 13)	intron (NM_146119, intron 1 of 13)	5029.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-59460839-1	chr19	59460339	59461339	+	544.0	f1_balb.idr	intron (NM_010132, intron 1 of 2)	intron (NM_010132, intron 1 of 2)	2149.0	NM_010132	13797.0	Mm.245394	NM_010132	ENSMUSG00000043969	Emx2	Pdo	empty spiracles homeobox 2	protein-coding	0.0	0.0	2.0	0.0	0.0	1.0
Merged-chr7-19137533-1	chr7	19137033	19138033	+	544.0	f1_c57bl6.idr	3' UTR (NM_175530, exon 2 of 2)	3' UTR (NM_175530, exon 2 of 2)	11663.0	NM_026111	67369.0	Mm.234876	NM_026111	ENSMUSG00000030407	Qpctl	1810019P04Rik|BB101812|gQC	glutaminyl-peptide cyclotransferase-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43695866-1	chr19	43695366	43696366	+	544.0	f0_c57.idr	intron (NM_053103, intron 3 of 12)	L2c|LINE|L2	6177.0	NM_053103	93685.0	Mm.248237	NM_053103	ENSMUSG00000025192	Entpd7	1810012B13Rik|1810020C02Rik|2810003F23Rik|LALP1|Lysal2	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding	0.0	0.0	4.5	0.0	0.0	0.0
Merged-chr13-9078986-1	chr13	9078486	9079486	+	544.0	f1_balb.idr	Intergenic	Intergenic	-14895.0	NM_001311117	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-26977574-1	chr14	26977074	26978074	+	544.0	f1_balb.idr	Intergenic	RMER17C|LTR|ERVK	-7023.0	NM_145221	72993.0	Mm.202322	NM_145221	ENSMUSG00000040760	Appl1	2900057D21Rik|7330406P05Rik|AI585782|AW209077|BB022931|C88264|DIP13	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	protein-coding	12.0	3.0	1.5	13.5	0.0	3.5
Merged-chr19-57483034-1	chr19	57482534	57483534	+	544.0	f0_balb.idr	intron (NM_029839, intron 4 of 6)	intron (NM_029839, intron 4 of 6)	-25530.0	NR_040306	78073.0	Mm.12411	NR_040306		6720468P15Rik	-	RIKEN cDNA 6720468P15 gene	ncRNA	3.5	4.5	0.0	0.5	4.5	0.0
Merged-chr16-44346613-1	chr16	44346113	44347113	+	544.0	f1_balb.idr	promoter-TSS (NM_144550)	promoter-TSS (NM_144550)	-788.0	NM_144550	212514.0	Mm.24035	NM_144550	ENSMUSG00000043065	Spice1	Ccdc52|D16Ertd480e	spindle and centriole associated protein 1	protein-coding	9.5	1.5	4.0	9.0	8.0	5.5
Merged-chr13-52622676-2	chr13	52622176	52623176	+	544.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 4 of 13)	intron (NM_011518, intron 4 of 13)	25794.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-48035075-1	chr4	48034575	48035575	+	544.0	f1_balb.idr	Intergenic	L1ME4b|LINE|L1	-10230.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126802014-1	chr8	126801514	126802514	+	544.0	f1_c57bl6.idr	Intergenic	Intergenic	-47006.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	1.0	0.0	1.0	1.0	0.0	1.0
Merged-chr15-74915402-2	chr15	74914902	74915902	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33698.0	NM_025929	67038.0	Mm.154566	NM_025929	ENSMUSG00000063522	2010109I03Rik	Ly6m	RIKEN cDNA 2010109I03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-84717145-2	chr2	84716645	84717645	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1981.0	NM_144887	228136.0	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	4.5	9.0	8.0	3.0	7.5	8.5
Merged-chr2-26935170-2	chr2	26934670	26935670	+	544.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198628, intron 1 of 18)	intron (NM_198628, intron 1 of 18)	1101.0	NM_198628	279029.0	Mm.330079	NM_198628	ENSMUSG00000049897	Stkld1	Gm711|Sgk071	serine/threonine kinase-like domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75511799-1	chr11	75511299	75512299	+	544.0	f1_c57bl6.idr	exon (NM_001029938, exon 6 of 8)	exon (NM_001029938, exon 6 of 8)	1705.0	NM_001029938	280408.0	Mm.41416	NM_001029938	ENSMUSG00000038195	Rilp	AI835553|Gm857	Rab interacting lysosomal protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-25205364-1	chr12	25204864	25205864	+	544.0	f1_c57bl6.idr	Intergenic	Lx|LINE|L1	76190.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-31268090-1	chr9	31267590	31268590	+	544.0	f1_c57bl6.idr	Intergenic	Intergenic	-3311.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-20228475-1	chr12	20227975	20228975	+	544.0	f1_balb.idr	Intergenic	MMERGLN-int|LTR|ERV1	587304.0	NR_015521	69513.0	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-46789980-1	chr7	46789480	46790480	+	544.0	f1_balb.idr	intron (NM_001005247, intron 2 of 22)	intron (NM_001005247, intron 2 of 22)	5901.0	NM_001005248	246694.0	Mm.379442	NM_178742	ENSMUSG00000014418	Hps5	AI646796|AL022647|C85120|haze|hz|maroon|mr|ru-2|ru2	HPS5, biogenesis of lysosomal organelles complex 2 subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171942870-1	chr1	171942370	171943370	+	544.0	f1_balb.idr	3' UTR (NM_030710, exon 8 of 8)	3' UTR (NM_030710, exon 8 of 8)	-23514.0	NR_151536	105244010.0	Mm.417758	NR_151535		Gm37065	-	predicted gene, 37065	ncRNA	8.5	2.0	0.0	1.5	11.5	5.5
Merged-chr2-156761932-1	chr2	156761432	156762432	+	544.0	f1_c57bl6.idr	intron (NM_001042488, intron 6 of 6)	intron (NM_001042488, intron 6 of 6)	-13532.0	NM_172118	98932.0	Mm.271770	NM_172118	ENSMUSG00000067818	Myl9	AI327049|MLC20|Mylc2c|RLC-C	myosin, light polypeptide 9, regulatory	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-41857739-1	chr5	41857239	41858239	+	544.0	f0_balb.idr	Intergenic	Intergenic	-13424.0	NM_001081422	665775.0	Mm.158726	NM_001081422	ENSMUSG00000061755	Bod1l	A230054D04Rik|AI853319|FAM44A|mKIAA1327	biorientation of chromosomes in cell division 1-like	protein-coding	0.0	1.0	9.0	0.0	13.5	4.0
Merged-chr6-38641855-1	chr6	38641355	38642355	+	544.0	f1_balb.idr	Intergenic	Intergenic	-4616.0	NM_001033171	74253.0	Mm.121859	NM_001033171	ENSMUSG00000071537	Klrg2	2310020F24Rik	killer cell lectin-like receptor subfamily G, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-46793589-1	chr8	46793089	46794089	+	544.0	f1_c57bl6.idr	intron (NR_152560, intron 2 of 7)	intron (NR_152560, intron 2 of 7)	53844.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126696628-1	chr7	126696128	126697128	+	544.0	f1_c57bl6.idr	promoter-TSS (NM_029420)	promoter-TSS (NM_029420)	628.0	NM_175103	66162.0	Mm.358692	NM_175103	ENSMUSG00000047721	Bola2	1110025L05Rik|BolA-2	bolA-like 2 (E. coli)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-54669641-1	chr3	54669141	54670141	+	544.0	f1_c57bl6.idr	Intergenic	Intergenic	-23174.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	7.5	29.0	15.0	14.0	14.5	8.0
Merged-chr13-42394739-1	chr13	42394239	42395239	+	544.0	f0_balb.idr	Intergenic	Intergenic	93263.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-24910988-1	chr2	24910488	24911488	+	544.0	f1_c57bl6.idr	intron (NM_001012518, intron 1 of 26)	B1_Mus1|SINE|Alu	8621.0	NM_172545	77683.0	Mm.24176	NM_172545	ENSMUSG00000036893	Ehmt1	9230102N17Rik|D330003E03|Eu-HMTase1|GLP|GLP1|KMT1D|mKIAA1876	euchromatic histone methyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17282405-1	chr6	17281905	17282905	+	544.0	f0_balb.idr	3' UTR (NM_001277756, exon 2 of 2)	3' UTR (NM_001277756, exon 2 of 2)	1220.0	NM_016900	12390.0	Mm.396075	NM_016900	ENSMUSG00000000058	Cav2	AI447843	caveolin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-192742097-1	chr1	192741597	192742597	+	544.0	f0_c57.idr	intron (NM_144881, intron 3 of 11)	intron (NM_144881, intron 3 of 11)	29122.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	7.0	1.5	10.0	6.5	2.0	4.0
Merged-chr5-65955046-2	chr5	65954546	65955546	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12078.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-29976708-2	chr16	29976208	29977208	+	544.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_037689, intron 1 of 5)	(TG)n|Simple_repeat|Simple_repeat	2416.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-114698530-1	chr5	114698030	114699030	+	544.0	f1_balb.idr	Intergenic	Intergenic	-7595.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	23.5	92.0	52.5	34.0	88.0	47.0
Merged-chr16-45178132-1	chr16	45177632	45178632	+	544.0	f1_balb.idr	intron (NM_001356366, intron 5 of 10)	L2a|LINE|L2	19303.0	NM_026402	67841.0	Mm.41775	NM_026402	ENSMUSG00000022663	Atg3	2610016C12Rik|APG3|Apg3l|Atg3l|PC3-96	autophagy related 3	protein-coding	9.0	4.5	6.5	14.5	0.0	6.0
Merged-chr4-117557411-1	chr4	117556911	117557911	+	544.0	f0_balb.idr	intron (NM_001356405, intron 2 of 8)	L2c|LINE|L2	7046.0	NM_080469	140546.0	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	0.0	0.0	4.0	0.0	0.0	6.5
Merged-chr4-128659655-1	chr4	128659155	128660155	+	544.0	f1_balb.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	4953.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-106156410-1	chr11	106155910	106156910	+	544.0	f1_balb.idr	TTS (NM_011947)	TTS (NM_011947)	3517.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-24966321-1	chr6	24965821	24966821	+	544.0	f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-10196.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	0.0	2.0	0.0	0.0	2.0	0.0
Merged-chr3-96498944-1	chr3	96498444	96499444	+	544.0	f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-26241.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	6.0	1.0	7.5	4.0	0.0	2.5
Merged-chr19-34067238-1	chr19	34066738	34067738	+	544.0	f0_balb.idr	promoter-TSS (NM_027340)	promoter-TSS (NM_027340)	-120.0	NM_027340	70166.0	Mm.75602	NM_027340	ENSMUSG00000024770	Lipn	2210418G03Rik|Lipl4	lipase, family member N	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-92086070-1	chr16	92085570	92086570	+	544.0	f1_c57bl6.idr	3' UTR (NM_017391, exon 2 of 2)	3' UTR (NM_017391, exon 2 of 2)	27734.0	NM_080456	121022.0	Mm.217354	NM_080456	ENSMUSG00000039680	Mrps6	AW046321	mitochondrial ribosomal protein S6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-78095109-1	chr11	78094609	78095609	+	544.0	f0_balb.idr	intron (NM_145430, intron 1 of 2)	intron (NM_145430, intron 1 of 2)	436.0	NM_145430	216971.0	Mm.119387	NM_145430	ENSMUSG00000037750	Fam222b	9630020I17Rik	family with sequence similarity 222, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-90217249-1	chr16	90216749	90217749	+	544.0	f1_c57bl6.idr	Intergenic	Intergenic	-3493.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-147227947-1	chr3	147227447	147228447	+	544.0	f1_balb.idr	Intergenic	Intergenic	375580.0	NM_001302957	70892.0	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	0.0	2.0	17.0	3.0	5.5	4.0
Merged-chr19-42631778-1	chr19	42631278	42632278	+	544.0	f1_c57bl6.idr	Intergenic	Intergenic	-18972.0	NM_053083	67573.0	Mm.178767	NM_053083	ENSMUSG00000025185	Loxl4	4833426I20Rik|Loxc	lysyl oxidase-like 4	protein-coding	4.5	0.0	0.0	1.5	0.0	0.0
Merged-chr16-17449872-1	chr16	17449372	17450372	+	544.0	f1_balb.idr	Intergenic	B4|SINE|B4	-2113.0	NM_001277231	12929.0	Mm.21048	NM_007764	ENSMUSG00000006134	Crkl	1110025F07Rik|AA589403|AI325100|Crkol	v-crk avian sarcoma virus CT10 oncogene homolog-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135471230-1	chr5	135470730	135471730	+	544.0	f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	73892.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-31847845-1	chr11	31847345	31848345	+	544.0	f0_c57.idr	Intergenic	MER2|DNA|TcMar-Tigger	-23095.0	NM_001290676	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	6.5	3.5	4.0	9.5	6.5	3.5
Merged-chr9-21407276-1	chr9	21406776	21407776	+	544.0	f1_balb.idr	non-coding (NR_045742, exon 3 of 5)	non-coding (NR_045742, exon 3 of 5)	4444.0	NR_045742	330902.0	Mm.437044	NR_045742	ENSMUSG00000097665	Gm16853	4930565O14	predicted gene, 16853	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-73088918-1	chr11	73088418	73089418	+	544.0	f1_balb.idr	Intergenic	Intergenic	-1665.0	NM_001361245	16407.0	Mm.96	NM_008399	ENSMUSG00000005947	Itgae	A530055J10|CD103|aM290|alpha-E1|alpha-M290	integrin alpha E, epithelial-associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-109287028-1	chr13	109286528	109287528	+	544.0	f1_c57bl6.idr	intron (NM_011056, intron 3 of 16)	MIR3|SINE|MIR	-37716.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-75529587-1	chr11	75529087	75530087	+	544.0	f1_c57bl6.idr	Intergenic	Intergenic	-2107.0	NM_001199284	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47625351-1	chr9	47624851	47625851	+	544.0	f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	94999.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	69.5	113.5	132.5	66.5	104.0	121.5
Merged-chr7-44820097-1	chr7	44819597	44820597	+	544.0	f1_c57bl6.idr	intron (NM_001171024, intron 1 of 8)	intron (NM_001171024, intron 1 of 8)	-3439.0	NR_033136	107503.0	Mm.389890	NM_030693	ENSMUSG00000038539	Atf5	AFTA|Atf7|Atfx|ODA-10	activating transcription factor 5	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr16-23855418-1	chr16	23854918	23855918	+	544.0	f0_balb.idr	Intergenic	Intergenic	35426.0	NM_009215	20604.0	Mm.2453	NM_009215	ENSMUSG00000004366	Sst	SOM|SRIF|SS|Smst	somatostatin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-17523040-2	chr9	17522540	17523540	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	-769227.0	NM_025844	66917.0	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150567865-1	chr2	150567365	150568365	+	544.0	f1_c57bl6.idr	Intergenic	Intergenic	-2550.0	NM_009977	13011.0	Mm.12965	NM_009977	ENSMUSG00000068129	Cst7	Cmap	cystatin F (leukocystatin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-8793449-1	chr10	8792949	8793949	+	544.0	f1_balb.idr	intron (NM_175155, intron 4 of 19)	intron (NM_175155, intron 4 of 19)	92621.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	1.5	0.5	0.0	0.0	1.5	0.5
Merged-chr5-135610586-2	chr5	135610086	135611086	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31B2|LTR|ERVK	-22068.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	1.0	6.5	5.5	1.0	5.5	2.0
Merged-chr19-6358312-1	chr19	6357812	6358812	+	544.0	f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-5378.0	NM_011750	22668.0	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-88512351-2	chr4	88511851	88512851	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10443.0	NM_010510	15977.0	Mm.1245	NM_010510	ENSMUSG00000048806	Ifnb1	IFN-beta|IFNB|Ifb	interferon beta 1, fibroblast	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-110409557-1	chr9	110409057	110410057	+	544.0	f1_balb.idr	Intergenic	B3|SINE|B2	-1347.0	NM_001081043	104831.0	Mm.335477	NM_001081043	ENSMUSG00000036057	Ptpn23	AI462446|PTP-TD14	protein tyrosine phosphatase, non-receptor type 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-135144716-1	chr1	135144216	135145216	+	544.0	f1_c57bl6.idr	3' UTR (NM_001356382, exon 10 of 10)	3' UTR (NM_001356382, exon 10 of 10)	-2118.0	NM_026823	68724.0	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39451134-1	chr6	39450634	39451634	+	544.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	30756.0	NR_152168	621427.0	Mm.389742	NR_152168	ENSMUSG00000068601	Gm10244	Anmkrn1	predicted gene 10244	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-94297180-1	chr13	94296680	94297680	+	544.0	f1_balb.idr	Intergenic	Intergenic	-11349.0	NM_001346609	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-50833244-1	chr14	50832744	50833744	+	544.0	f1_c57bl6.idr	intron (NM_009351, intron 43 of 54)	MIRb|SINE|MIR	25328.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	1.0	1.5	3.0	8.5	0.0	3.0
Merged-chr15-62205347-1	chr15	62204847	62205847	+	544.0	f1_c57bl6.idr	intron (NR_132746, intron 3 of 6)	intron (NR_132746, intron 3 of 6)	14104.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75789579-2	chr14	75789079	75790079	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2542.0	NM_026232	67554.0	Mm.46067	NM_026232	ENSMUSG00000022003	Slc25a30	4933433D23Rik|AV025504|AV221431|AW319655|KMCP1	solute carrier family 25, member 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-171670111-1	chr2	171669611	171670611	+	544.0	f1_c57bl6.idr	Intergenic	Intergenic	292688.0	NR_040509	75655.0	Mm.396203	NR_040509	ENSMUSG00000086823	1700028P15Rik	-	RIKEN cDNA 1700028P15 gene	ncRNA	6.0	0.0	0.0	0.0	0.5	0.0
Merged-chr19-55808449-2	chr19	55807949	55808949	+	544.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	RSINE1|SINE|B4	66639.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	2.0	1.0	5.0	2.0	1.0	4.5
Merged-chr10-25032789-1	chr10	25032289	25033289	+	544.0	f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-105319.0	NM_007482	11846.0	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	0.0	0.5	2.0	0.0	6.5	0.0
Merged-chr1-127092151-1	chr1	127091651	127092651	+	544.0	f1_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-112835.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	1.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-63195479-1	chr14	63194979	63195979	+	544.0	f1_balb.idr	Intergenic	Intergenic	-1954.0	NM_201610	382913.0	Mm.239490	NM_201610	ENSMUSG00000035121	Neil2	Gm1212|NEH2	nei like 2 (E. coli)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-163615461-1	chr2	163614961	163615961	+	544.0	f1_c57bl6.idr	exon (NM_181734, exon 5 of 5)	exon (NM_181734, exon 5 of 5)	8249.0	NM_001305803	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-54846512-1	chr1	54846012	54847012	+	544.0	f0_balb.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	79875.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	6.0	7.0	1.0	10.5	4.0	10.0
Merged-chr17-83705030-1	chr17	83704530	83705530	+	544.0	f1_balb.idr	Intergenic	PB1D7|SINE|Alu	-1133.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-154542239-2	chr2	154541739	154542739	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6665.0	NM_029305	75480.0	Mm.440434	NM_029305	ENSMUSG00000038523	1700003F12Rik	-	RIKEN cDNA 1700003F12 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126808911-2	chr8	126808411	126809411	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40109.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-156209721-1	chr4	156209221	156210221	+	544.0	f1_c57bl6.idr	Intergenic	Intergenic	-6206.0	NM_172417	74183.0	Mm.431343	NM_172417	ENSMUSG00000078486	Perm1	2310042D19Rik	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding	6.5	43.5	20.0	4.0	7.5	8.0
Merged-chr2-94262382-2	chr2	94261882	94262882	+	544.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030431)	promoter-TSS (NR_030431)	-983.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3753961-1	chr19	3753461	3754461	+	544.0	f0_balb.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-13460.0	NM_001167889	225888.0	Mm.278578	NM_144871	ENSMUSG00000045098	Kmt5b	AA117471|C630029K18Rik|Suv4-20h1|Suv420h1	lysine methyltransferase 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-54898355-1	chr14	54897855	54898855	+	544.0	f1_balb.idr	3' UTR (NM_019402, exon 7 of 7)	3' UTR (NM_019402, exon 7 of 7)	4212.0	NM_019402	54196.0	Mm.7723	NM_019402	ENSMUSG00000022194	Pabpn1	PAB2|Pabp3|mPABII	poly(A) binding protein, nuclear 1	protein-coding	0.0	1.0	0.0	5.5	0.0	6.0
Merged-chr13-101770289-1	chr13	101769789	101770789	+	544.0	f1_balb.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-2072.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-14582187-1	chr15	14581687	14582687	+	544.0	f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-1408512.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	2.5	0.0	3.0	4.0	1.0	1.0
Merged-chr7-29300507-1	chr7	29300007	29301007	+	544.0	f1_balb.idr	Intergenic	Intergenic	-3498.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	0.0	0.0	3.0	0.0	0.0	1.5
Merged-chr6-122591576-1	chr6	122591076	122592076	+	544.0	f0_balb.idr	intron (NM_031159, intron 3 of 7)	intron (NM_031159, intron 3 of 7)	10868.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	8.0	4.0	3.0	8.0	2.5	4.0
Merged-chr17-74427614-1	chr17	74427114	74428114	+	544.0	f1_balb.idr	intron (NM_001033367, intron 8 of 8)	RMER10B|LTR|ERVL	31494.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-31460141-1	chr15	31459641	31460641	+	544.0	f1_c57bl6.idr	intron (NM_172606, intron 25 of 25)	intron (NM_172606, intron 25 of 25)	-6452.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95959321-1	chr3	95958821	95959821	+	544.0	f1_c57bl6.idr	Intergenic	B3|SINE|B2	-26189.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	0.0	3.5	2.0	0.0	3.5	2.5
Merged-chr3-99208919-1	chr3	99208419	99209419	+	544.0	f1_c57bl6.idr	intron (NM_027462, intron 4 of 5)	intron (NM_027462, intron 4 of 5)	-9466.0	NR_105852	102465230.0		NR_105852	ENSMUSG00000098918	Mir6481	Gm27744|mmu-mir-6481	microRNA 6481	ncRNA	0.0	0.5	0.0	0.0	0.0	0.0
Merged-chr5-103155818-2	chr5	103155318	103156318	+	544.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081567, intron 2 of 13)	Lx9|LINE|L1	55516.0	NM_001081567	26414.0	Mm.39253	NM_009158	ENSMUSG00000046709	Mapk10	C230008H04Rik|JNK3|JNK3B1|JNK3B2|SAPK(beta)|Serk2|p493F12|p54bSAPK	mitogen-activated protein kinase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-5842938-2	chr2	5842438	5843438	+	544.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133837, intron 1 of 12)	Lx8|LINE|L1	-2096.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-98614135-1	chr10	98613635	98614635	+	544.0	f1_balb.idr	Intergenic	Intergenic	-262268.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99607802-1	chr7	99607302	99608302	+	544.0	f0_balb.idr	Intergenic	Intergenic	19301.0	NM_001195529	100503386.0	Mm.180719	NM_001195529	ENSMUSG00000096606	Tpbgl	EG245190|Gm4980	trophoblast glycoprotein-like	protein-coding	0.0	0.5	0.0	0.0	3.0	0.0
Merged-chr5-118065466-1	chr5	118064966	118065966	+	544.0	f1_balb.idr	3' UTR (NM_172721, exon 11 of 11)	3' UTR (NM_172721, exon 11 of 11)	37723.0	NM_021344	57816.0	Mm.273285	NM_021344	ENSMUSG00000029359	Tesc	1010001A17Rik|2410011K10Rik|TE-1	tescalcin	protein-coding	0.0	0.0	4.0	0.0	0.0	5.5
Merged-chr12-111293305-1	chr12	111292805	111293805	+	544.0	f1_balb.idr	3' UTR (NM_183016, exon 37 of 37)	3' UTR (NM_183016, exon 37 of 37)	22209.0	NM_033603	93835.0	Mm.197639	NM_033603	ENSMUSG00000021278	Amn	-	amnionless	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-117430367-2	chr8	117429867	117430867	+	544.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 8 of 20)	ID_B1|SINE|B4	-22656.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93483542-1	chr10	93483042	93484042	+	544.0	f1_c57bl6.idr	intron (NM_008517, intron 18 of 18)	intron (NM_008517, intron 18 of 18)	-5226.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	23.5	26.5	10.5	5.0	20.5	9.5
Merged-chr6-115291261-2	chr6	115290761	115291761	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39056.0	NM_001356406	110595.0	Mm.255607	NM_080639	ENSMUSG00000030317	Timp4	Timp-4	tissue inhibitor of metalloproteinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64580857-2	chr17	64580357	64581357	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-20792.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-63276689-1	chr13	63276189	63277189	+	544.0	f1_balb.idr	intron (NM_001289926, intron 13 of 15)	ID_B1|SINE|B4	20458.0	NR_045794	100504114.0	Mm.437070	NR_045794	ENSMUSG00000097242	Gm16907	-	predicted gene, 16907	ncRNA	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr2-173346263-1	chr2	173345763	173346763	+	544.0	f1_c57bl6.idr	Intergenic	Intergenic	-69730.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr7-44570065-2	chr7	44569565	44570565	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4A|LTR|ERVK	-2380.0	NM_008437	16541.0	Mm.383181	NM_008437	ENSMUSG00000002204	Napsa	KAP|Kdap|NAP1|SNAPA|pronapsin	napsin A aspartic peptidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-59189569-2	chr2	59189069	59190069	+	544.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	(TTTTG)n|Simple_repeat|Simple_repeat	28719.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-39073026-1	chr12	39072526	39073526	+	544.0	f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	289315.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.0	3.5	0.0	0.5	0.0	0.0
Merged-chr14-25869902-1	chr14	25869402	25870402	+	544.0	f1_c57bl6.idr	intron (NM_013469, intron 2 of 14)	intron (NM_013469, intron 2 of 14)	27747.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-50098499-1	chr17	50097999	50098999	+	544.0	f1_balb.idr	intron (NM_181397, intron 3 of 9)	intron (NM_181397, intron 3 of 9)	91998.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	1.5	11.0	2.5	0.5	1.5	1.5
Merged-chr5-100706583-1	chr5	100706083	100707083	+	544.0	f1_balb.idr	intron (NM_152803, intron 3 of 11)	Tigger1|DNA|TcMar-Tigger	13133.0	NM_152803	15442.0	Mm.265786	NM_152803	ENSMUSG00000035273	Hpse	HSE1|Hpa|Hpr1	heparanase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34039061-2	chr17	34038561	34039561	+	544.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317722)	promoter-TSS (NM_001317722)	-77.0	NM_009926	12815.0	Mm.20230	NM_009926	ENSMUSG00000024330	Col11a2	-	collagen, type XI, alpha 2	protein-coding	1.5	0.0	2.0	0.0	0.0	0.0
Merged-chr12-105764517-1	chr12	105764017	105765017	+	544.0	f1_c57bl6.idr	intron (NM_030187, intron 14 of 17)	B3|SINE|B2	-20180.0	NM_011112	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	3.0	0.5	1.5	4.0	0.5	0.5
Merged-chr17-24748324-1	chr17	24747824	24748824	+	544.0	f1_balb.idr	Intergenic	Intergenic	-4664.0	NM_001357342	328779.0	Mm.328848	NM_001012402	ENSMUSG00000039628	Hs3st6	3-OST-6	heparan sulfate (glucosamine) 3-O-sulfotransferase 6	protein-coding	0.0	1.0	4.0	0.0	10.5	1.0
Merged-chr13-113355129-1	chr13	113354629	113355629	+	544.0	f1_balb.idr	Intergenic	Intergenic	145470.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65360199-1	chr3	65359699	65360699	+	544.0	f1_balb.idr	intron (NM_001357358, intron 11 of 13)	MIRc|SINE|MIR	-10770.0	NR_040390	319798.0	Mm.445698	NR_040390		A730090N16Rik	-	RIKEN cDNA A730090N16 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-35029696-1	chr7	35029196	35030196	+	544.0	f0_balb.idr	intron (NM_008820, intron 11 of 14)	intron (NM_008820, intron 11 of 14)	26870.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-138172896-1	chr5	138172396	138173396	+	544.0	f1_balb.idr	intron (NM_021392, intron 3 of 14)	intron (NM_021392, intron 3 of 14)	875.0	NM_021392	11781.0	Mm.113205	NM_021392	ENSMUSG00000019518	Ap4m1	4930443L05Rik|Ap4m4	adaptor-related protein complex AP-4, mu 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-140756853-1	chr5	140756353	140757353	+	544.0	f0_balb.idr	Intergenic	Intergenic	32726.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135737470-2	chr7	135736970	135737970	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21091.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-37258745-1	chr10	37258245	37259245	+	544.0	f1_balb.idr	Intergenic	Intergenic	-119819.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-181246733-2	chr2	181246233	181247233	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4706.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-139576071-1	chr4	139575571	139576571	+	544.0	f1_balb.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	1351.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	21.5	13.0	4.0	1.0	0.0	4.0
Merged-chr8-13320527-1	chr8	13320027	13321027	+	544.0	f1_balb.idr	intron (NM_172282, intron 12 of 12)	intron (NM_172282, intron 12 of 12)	-18224.0	NM_001291765	21781.0	Mm.925	NM_009361	ENSMUSG00000038482	Tfdp1	Dp1|Drtf1	transcription factor Dp 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-66438884-1	chr18	66438384	66439384	+	544.0	f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-19720.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-37936623-1	chr18	37936123	37937123	+	544.0	f1_c57bl6.idr	TTS (NM_010411)	TTS (NM_010411)	-1147.0	NM_001305980	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122935518-1	chr14	122935018	122936018	+	544.0	f1_balb.idr	intron (NR_153663, intron 10 of 16)	intron (NR_153663, intron 10 of 16)	-22353.0	NM_145466	223267.0	Mm.379358	NM_145466	ENSMUSG00000041625	Ggact	A2ld1	gamma-glutamylamine cyclotransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39362896-1	chr6	39362396	39363396	+	544.0	f1_balb.idr	intron (NR_155077, intron 3 of 13)	MER68|LTR|ERVL	14539.0	NR_155076	72144.0	Mm.482167	NM_028123	ENSMUSG00000029924	Slc37a3	2610507O21Rik|AU044904	solute carrier family 37 (glycerol-3-phosphate transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91817212-1	chr16	91816712	91817712	+	544.0	f1_balb.idr	intron (NM_001110276, intron 11 of 15)	intron (NM_001110276, intron 11 of 15)	87841.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34726370-1	chr13	34725870	34726870	+	544.0	f0_balb.idr	Intergenic	Intergenic	-13272.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132526142-1	chr4	132525642	132526642	+	544.0	f1_balb.idr	Intergenic	B1_Mus1|SINE|Alu	9272.0	NM_007512	11983.0	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-124931323-1	chr2	124930823	124931823	+	544.0	f1_balb.idr	Intergenic	Intergenic	-136804.0	NM_175034	317750.0	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-29653839-1	chr9	29653339	29654339	+	544.0	f1_c57bl6.idr	intron (NM_001357593, intron 1 of 9)	intron (NM_001357593, intron 1 of 9)	-240387.0	NM_001357603	235106.0	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22012665-1	chr16	22012165	22013165	+	544.0	f1_c57bl6.idr	intron (NR_027488, intron 2 of 16)	intron (NR_027488, intron 2 of 16)	3181.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-104426226-2	chr11	104425726	104426726	+	544.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 2 of 14)	intron (NM_001359634, intron 2 of 14)	16065.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-39894596-1	chr11	39894096	39895096	+	544.0	f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-504371.0	NR_126439	75315.0	Mm.461295	NR_126439		4930553C11Rik	-	RIKEN cDNA 4930553C11 gene	ncRNA	5.5	0.0	5.5	0.0	0.0	2.0
Merged-chr17-46381307-1	chr17	46380807	46381807	+	544.0	f1_balb.idr	Intergenic	Intergenic	-2459.0	NM_207671	57908.0	Mm.439916	NM_021346	ENSMUSG00000015597	Zfp318	2610034E08Rik|D530032D06Rik|TZF|Znf318	zinc finger protein 318	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-157628852-2	chr3	157628352	157629352	+	544.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011196, intron 2 of 2)	(TG)n|Simple_repeat|Simple_repeat	61960.0	NM_011196	19218.0	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9188331-1	chr13	9187831	9188831	+	544.0	f1_c57bl6.idr	Intergenic	Intergenic	-88194.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-11397088-2	chr15	11396588	11397588	+	544.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033074, intron 2 of 18)	intron (NM_033074, intron 2 of 18)	2570.0	NM_033074	110960.0	Mm.286061	NM_033074	ENSMUSG00000022241	Tars	D15Wsu59e|ThrRS	threonyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-147012138-1	chr2	147011638	147012638	+	544.0	f1_balb.idr	promoter-TSS (NM_011917)	promoter-TSS (NM_011917)	-861.0	NM_001356403	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	88.0	249.0	144.5	92.5	195.5	126.0
Merged-chr2-150824772-1	chr2	150824272	150825272	+	544.0	f1_balb.idr	intron (NM_153781, intron 15 of 19)	intron (NM_153781, intron 15 of 19)	17798.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-39324835-2	chr5	39324335	39325335	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	278739.0	NR_045416	75095.0	Mm.332354	NR_045416	ENSMUSG00000106741	4930513D17Rik	-	RIKEN cDNA 4930513D17 gene	ncRNA	0.0	1.0	0.0	0.0	7.0	0.0
Merged-chr19-47356095-1	chr19	47355595	47356595	+	544.0	f1_balb.idr	intron (NM_008018, intron 5 of 14)	intron (NM_008018, intron 5 of 14)	-82506.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	0.0	5.5	7.5	4.5	0.0	1.5
Merged-chr2-172471513-2	chr2	172471013	172472013	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1041.0	NM_029608	76426.0	Mm.46148	NM_029608	ENSMUSG00000027505	Fam209	1700029J11Rik	family with sequence similarity 209	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-47670791-1	chr8	47670291	47671291	+	544.0	f0_balb.idr	intron (NM_023503, intron 1 of 1)	intron (NM_023503, intron 1 of 1)	4368.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167097080-1	chr2	167096580	167097580	+	544.0	f1_balb.idr	3' UTR (NM_008420, exon 2 of 2)	3' UTR (NM_008420, exon 2 of 2)	31787.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111760845-1	chr12	111760345	111761345	+	544.0	f1_balb.idr	intron (NM_001361610, intron 1 of 14)	intron (NM_001361610, intron 1 of 14)	1977.0	NM_001025361	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43382775-1	chr4	43382275	43383275	+	544.0	f1_balb.idr	intron (NM_001037709, intron 1 of 11)	intron (NM_001037709, intron 1 of 11)	793.0	NM_001037709	100213.0	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	135.5	353.5	238.5	96.5	203.0	134.0
Merged-chr10-111117859-2	chr10	111117359	111118359	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46943.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-88981558-1	chr11	88981058	88982058	+	544.0	f1_balb.idr	exon (NM_016706, exon 2 of 7)	exon (NM_016706, exon 2 of 7)	7623.0	NM_016706	12812.0	Mm.268004	NM_016706	ENSMUSG00000033983	Coil	C79982|Cln80|p80|p80-coilin	coilin	protein-coding	2.0	0.5	2.0	2.0	0.0	4.0
Merged-chr7-19354451-1	chr7	19353951	19354951	+	544.0	f1_balb.idr	exon (NM_001127324, exon 7 of 7)	exon (NM_001127324, exon 7 of 7)	5032.0	NM_145822	70333.0	Mm.171370	NM_145822	ENSMUSG00000047649	Cd3eap	1190028F09|2610103M17Rik|ASE-1|Ase1|CAST|PAF49	CD3E antigen, epsilon polypeptide associated protein	protein-coding	0.0	0.0	2.0	0.0	0.0	0.0
Merged-chr19-4855849-1	chr19	4855349	4856349	+	544.0	f1_balb.idr	intron (NM_019861, intron 2 of 13)	intron (NM_019861, intron 2 of 13)	720.0	NM_019861	56464.0	Mm.29561	NM_019861	ENSMUSG00000083282	Ctsf	AI481912	cathepsin F	protein-coding	4.0	4.5	5.0	9.0	2.0	6.5
Merged-chr3-9706697-1	chr3	9706197	9707197	+	544.0	f1_c57bl6.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	-96612.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-182421624-2	chr1	182421124	182422124	+	544.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173378, intron 1 of 17)	B4A|SINE|B4	12457.0	NM_173378	209456.0	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-86079462-1	chr5	86078962	86079962	+	544.0	f0_balb.idr	intron (NM_001310639, intron 2 of 7)	intron (NM_001310639, intron 2 of 7)	7716.0	NM_001310639	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	2.0	8.5	6.0	4.0	0.0	8.5
Merged-chr11-69911369-1	chr11	69910869	69911869	+	544.0	f1_c57bl6.idr	intron (NM_001013414, intron 25 of 28)	intron (NM_001013414, intron 25 of 28)	-2665.0	NM_001357906	56310.0	Mm.477738	NM_019726	ENSMUSG00000023170	Gps2	AI505953|GPS-2	G protein pathway suppressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167682071-2	chr2	167681571	167682571	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6844.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-127208339-1	chr1	127207839	127208839	+	544.0	f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	3353.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.0	0.0	2.0	1.0	0.0	0.0
Merged-chr13-45976423-2	chr13	45975923	45976923	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-11432.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54561378-1	chr11	54560878	54561878	+	544.0	f1_balb.idr	exon (NM_175258, exon 5 of 28)	exon (NM_175258, exon 5 of 28)	-34768.0	NM_001252498	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-21692322-1	chr15	21691822	21692822	+	544.0	f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	580870.0	NM_001008420	215654.0	Mm.300909	NM_001008420	ENSMUSG00000040452	Cdh12	Cdhb	cadherin 12	protein-coding	1.5	2.0	5.0	1.0	3.0	1.0
Merged-chr7-81864731-1	chr7	81864231	81865231	+	544.0	f1_c57bl6.idr	intron (NM_001291282, intron 2 of 9)	A-rich|Low_complexity|Low_complexity	2044.0	NM_001291282	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-57891212-1	chr14	57890712	57891712	+	544.0	f1_c57bl6.idr	promoter-TSS (NM_001360097)	promoter-TSS (NM_001360097)	-876.0	NM_001360097	75965.0	Mm.29044	NM_029492	ENSMUSG00000021969	Zdhhc20	4930542A17Rik|5033406L14Rik|AI448102|B230110O18Rik|HK11	zinc finger, DHHC domain containing 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118144334-1	chr11	118143834	118144834	+	544.0	f1_balb.idr	Intergenic	Intergenic	-15115.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-83922888-1	chr8	83922388	83923388	+	544.0	f1_c57bl6.idr	intron (NM_181039, intron 3 of 22)	intron (NM_181039, intron 3 of 22)	22790.0	NM_181039	330814.0	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	0.0	2.5	0.0	0.5	0.0	3.0
Merged-chr1-51580281-1	chr1	51579781	51580781	+	544.0	f0_balb.idr	intron (NR_151621, intron 3 of 3)	intron (NR_151621, intron 3 of 3)	16437.0	NR_151621	100045066.0	Mm.404734	NR_151621		Gm17767	-	predicted gene, 17767	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-150134244-1	chr4	150133744	150134744	+	544.0	f1_c57bl6.idr	intron (NM_019741, intron 6 of 13)	RSINE1|SINE|B4	-14728.0	NM_001085529	435818.0	Mm.359648	NM_001085529	ENSMUSG00000062064	Slc2a7	-	solute carrier family 2 (facilitated glucose transporter), member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-44631146-2	chr10	44630646	44631646	+	543.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-172398.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-20481035-2	chr14	20480535	20481535	+	543.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009674)	promoter-TSS (NM_009674)	-902.0	NM_009674	11750.0	Mm.280231	NM_009674	ENSMUSG00000021814	Anxa7	AI265384|AI316497|Anx7|synexin	annexin A7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-83730397-1	chr12	83729897	83730897	+	543.5	f0_balb.idr	intron (NM_001362271, intron 9 of 11)	intron (NM_001362271, intron 9 of 11)	-33237.0	NM_001205343	170721.0	Mm.133443	NM_130887	ENSMUSG00000021223	Papln	E030033C16Rik	papilin, proteoglycan-like sulfated glycoprotein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-68254213-2	chr18	68253713	68254713	+	543.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172631, exon 6 of 6)	exon (NM_172631, exon 6 of 6)	6760.0	NR_106078	102465702.0		NR_106078	ENSMUSG00000098253	Mir7219	Gm27613|mmu-mir-7219	microRNA 7219	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89167987-2	chr15	89167487	89168487	+	543.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_138749, exon 4 of 38)	exon (NM_138749, exon 4 of 38)	-5079.0	NR_106066	102465672.0		NR_106066	ENSMUSG00000106328	Mir7118	mmu-mir-7118	microRNA 7118	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-3343548-2	chr18	3343048	3344048	+	543.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033457, intron 1 of 1)	L1_Mur2|LINE|L1	-5959.0	NM_001110852	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-17192347-2	chr11	17191847	17192847	+	543.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024459, intron 2 of 5)	intron (NM_024459, intron 2 of 5)	19242.0	NM_025443	66249.0	Mm.27831	NM_025443	ENSMUSG00000020116	Pno1	1810003N24Rik|AA407421|AU015468|AU019495|AU042323|Emi3|Imi3	partner of NOB1 homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6537286-2	chr2	6536786	6537786	+	543.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	184376.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119310816-2	chr13	119310316	119311316	+	543.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	98195.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-116327227-2	chr7	116326727	116327727	+	543.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	6963.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64128267-2	chr13	64127767	64128767	+	543.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001321, intron 1 of 11)	intron (NM_001001321, intron 1 of 11)	1063.0	NM_001001321	70484.0	Mm.133731	NM_001001321	ENSMUSG00000033114	Slc35d2	5730408I21Rik|SQV7L|UGTrel8|hfrc|mUGTrel8	solute carrier family 35, member D2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118946132-2	chr14	118945632	118946632	+	543.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008929, intron 1 of 11)	intron (NM_008929, intron 1 of 11)	8200.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-50754247-2	chr16	50753747	50754747	+	543.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21474.0	NR_028300	68190.0	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6392815-2	chr19	6392315	6393315	+	543.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011224, intron 15 of 19)	intron (NM_011224, intron 15 of 19)	-7768.0	NM_011242	19395.0	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-150832320-2	chr2	150831820	150832820	+	543.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153781)	TTS (NM_153781)	10250.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132604325-2	chr4	132603810	132604810	+	543.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-34736.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	6.5	3.0	0.0	6.5	3.0	0.0
Merged-chr6-58610645-2	chr6	58610145	58611145	+	543.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011920, intron 1 of 15)	intron (NM_011920, intron 1 of 15)	13973.0	NM_011920	26357.0	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139256379-2	chr5	139255879	139256879	+	543.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163316, intron 1 of 8)	intron (NM_001163316, intron 1 of 8)	2882.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-85053639-2	chr16	85053139	85054139	+	543.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 6 of 15)	B4A|SINE|B4	81428.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	5.5	0.0	0.0	0.0	2.5	1.0
Merged-chr7-19462798-2	chr7	19462298	19463298	+	543.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-4304.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-107574948-2	chr8	107574448	107575448	+	543.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	13534.0	NM_010817	17463.0	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32589490-2	chr2	32588990	32589990	+	543.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001276425, exon 3 of 6)	exon (NM_001276425, exon 3 of 6)	2412.0	NM_011373	20448.0	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-21685598-2	chr14	21685098	21686098	+	543.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013826, intron 3 of 3)	intron (NM_001013826, intron 3 of 3)	28978.0	NM_001013826	435391.0	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-131871615-2	chr4	131871111	131872111	+	543.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B2|LTR|ERVL	-2028.0	NM_020587	57317.0	Mm.2478	NM_020587	ENSMUSG00000028911	Srsf4	5730499P16Rik|AW550192|MNCb-2616|SRp75|Sfrs4	serine/arginine-rich splicing factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-4947963-2	chr11	4947463	4948463	+	543.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010904, exon 1 of 4)	intron (NM_001243043, intron 1 of 22)	101.0	NM_010904	380684.0	Mm.298283	NM_010904	ENSMUSG00000020396	Nefh	NF-H|NF200|Nfh|mKIAA0845	neurofilament, heavy polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-63582852-2	chr4	63582352	63583352	+	543.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144905, intron 9 of 9)	intron (NM_144905, intron 9 of 9)	17912.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-9165521-2	chr13	9165021	9166021	+	543.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 14 of 17)	Tigger7|DNA|TcMar-Tigger	71640.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-83530278-2	chr9	83529778	83530778	+	543.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-18060.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0.0	4.5	0.0	5.5	1.5	7.0
Merged-chr17-85018315-2	chr17	85017815	85018815	+	543.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159497, intron 5 of 5)	intron (NM_001159497, intron 5 of 5)	-10032.0	NM_009205	20532.0	Mm.227176	NM_009205	ENSMUSG00000024131	Slc3a1	D2H|NBAT|NTAA|RBAT	solute carrier family 3, member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-5781582-2	chr19	5781082	5782082	+	543.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-10163.0	NR_155264	78891.0	Mm.276063	NM_023912	ENSMUSG00000024941	Scyl1	2810011O19Rik|C85140|Ntkl|mdf|mfd|p105	SCY1-like 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-37725070-2	chr3	37724570	37725570	+	543.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198657)	promoter-TSS (NM_198657)	-710.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-98229605-2	chr5	98229105	98230105	+	543.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24579.0	NM_010203	14176.0	Mm.5055	NM_010203	ENSMUSG00000029337	Fgf5	Fgf-5|HBGF-5|angora|go	fibroblast growth factor 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5667846-2	chr17	5667346	5668346	+	543.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 2 of 8)	intron (NM_146073, intron 2 of 8)	-130811.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94281914-2	chr11	94281414	94282414	+	543.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39335.0	NM_181819	278507.0	Mm.342216	NM_181819	ENSMUSG00000044177	Wfikkn2	2610304F08Rik|AY100450|Gasp1|WFIKKNRP	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2	protein-coding	0.0	4.5	0.0	0.0	2.0	2.0
Merged-chr13-55475366-2	chr13	55474866	55475866	+	543.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_019813, exon 12 of 14)	exon (NM_019813, exon 12 of 14)	2410.0	NR_105909	102465569.0		NR_105909	ENSMUSG00000098341	Mir6944	Gm27710|mmu-mir-6944	microRNA 6944	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-151531099-2	chr2	151530599	151531599	+	543.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11384.0	NR_126058	14225.0	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-13026737-2	chr7	13026237	13027237	+	543.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011588, intron 3 of 16)	intron (NM_011588, intron 3 of 16)	2585.0	NM_011588	21849.0	Mm.15701	NM_011588	ENSMUSG00000005566	Trim28	AA408787|KAP-1|KRIP-1|MommeD9|Tif1b|Tif1beta	tripartite motif-containing 28	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-70923545-2	chr9	70923045	70924045	+	543.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	11263.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-126943104-2	chr8	126942604	126943604	+	543.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024214, intron 1 of 4)	intron (NM_024214, intron 1 of 4)	2817.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-50650251-2	chr18	50649751	50650751	+	543.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL1|LINE|L1	-81552.0	NM_026108	67365.0	Mm.158150	NM_026108	ENSMUSG00000048875	Pudp	1700121L12Rik|GS1|Hdhd1|Hdhd1a	pseudouridine 5-phosphatase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99159641-2	chr12	99159141	99160141	+	543.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3167.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-24497006-1	chr9	24496506	24497506	+	543.0	f1_c57bl6.idr	intron (NM_001359948, intron 1 of 22)	intron (NM_001359948, intron 1 of 22)	6134.0	NM_001359948	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-58734028-1	chr3	58733528	58734528	+	543.0	f0_balb.idr	intron (NR_045167, intron 3 of 7)	MTC|LTR|ERVL-MaLR	41439.0	NR_045167	71301.0	Mm.254475	NR_045167	ENSMUSG00000097725	4930593A02Rik	4933440I01Rik	RIKEN cDNA 4930593A02 gene	ncRNA	2.0	1.5	2.0	4.0	6.5	1.5
Merged-chr19-9895703-2	chr19	9895162	9896162	+	543.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016692, intron 1 of 17)	intron (NM_016692, intron 1 of 17)	3871.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.0	0.0	13.0	1.5	10.5	0.0
Merged-chr7-117481077-1	chr7	117480577	117481577	+	543.0	f0_balb.idr	intron (NM_175645, intron 2 of 11)	intron (NM_175645, intron 2 of 11)	100098.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-12982334-1	chr7	12981834	12982834	+	543.0	f1_c57bl6.idr	exon (NM_001168561, exon 5 of 5)	exon (NM_001168561, exon 5 of 5)	4486.0	NM_001168561	269870.0	Mm.62083	NM_175558	ENSMUSG00000033961	Zfp446	A630035I11Rik|A930031C22|AA120513|AV306632	zinc finger protein 446	protein-coding	1.0	0.0	1.0	0.0	0.0	4.0
Merged-chr3-136490382-1	chr3	136489882	136490882	+	543.0	f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-41033.0	NR_040592	70055.0	Mm.261063	NR_040592	ENSMUSG00000099508	1700030L20Rik	-	RIKEN cDNA 1700030L20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-125387165-1	chr10	125386665	125387665	+	543.0	f1_balb.idr	Intergenic	Intergenic	-58202.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	21.5	14.5	19.5	15.5	13.5	22.5
Merged-chr16-44759211-2	chr16	44758711	44759711	+	543.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6525.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	16.5	23.0	9.0	10.5	17.0	9.5
Merged-chr10-80655847-1	chr10	80655347	80656347	+	543.0	f1_c57bl6.idr	intron (NM_145361, intron 1 of 8)	intron (NM_145361, intron 1 of 8)	1224.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-46393030-1	chr4	46392530	46393530	+	543.0	f1_balb.idr	TTS (NM_053149)	TTS (NM_053149)	-3593.0	NM_001347095	74753.0	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36505237-1	chr18	36504737	36505737	+	543.0	f1_c57bl6.idr	3' UTR (NM_010415, exon 6 of 6)	3' UTR (NM_010415, exon 6 of 6)	10568.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	1.0	0.0	0.0	3.5	0.0	0.0
Merged-chr18-56745266-1	chr18	56744766	56745766	+	543.0	f0_balb.idr	intron (NM_010721, intron 8 of 10)	intron (NM_010721, intron 8 of 10)	37453.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-68281249-1	chr10	68280749	68281749	+	543.0	f1_balb.idr	Intergenic	Intergenic	-2523.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	11.0	13.0	10.0	9.5	15.0	19.0
Merged-chr5-121958531-1	chr5	121958031	121959031	+	543.0	f1_balb.idr	intron (NM_007804, intron 2 of 22)	intron (NM_007804, intron 2 of 22)	89294.0	NM_007804	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	0.0	0.5	0.0	1.5	0.0	0.5
Merged-chr3-89234578-1	chr3	89234078	89235078	+	543.0	f1_c57bl6.idr	non-coding (NR_121683, exon 11 of 11)	non-coding (NR_121683, exon 11 of 11)	5522.0	NM_013605	17829.0	Mm.16193	NM_013605	ENSMUSG00000042784	Muc1	CD227|EMA|Muc-1	mucin 1, transmembrane	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-18290970-1	chr9	18290470	18291470	+	543.0	f1_c57bl6.idr	Intergenic	LTRIS2|LTR|ERV1	-1297.0	NM_025844	66917.0	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-137923868-1	chr1	137923368	137924368	+	543.0	f0_balb.idr	Intergenic	Intergenic	-42587.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-34444560-1	chr18	34444060	34445060	+	543.0	f1_balb.idr	intron (NM_146084, intron 19 of 20)	B3|SINE|B2	35137.0	NM_016927	53871.0	Mm.445792	NM_016927	ENSMUSG00000014503	Pkd2l2	TRPP5	polycystic kidney disease 2-like 2	protein-coding	0.5	0.0	2.0	0.0	4.0	0.5
Merged-chr11-98973891-2	chr11	98973391	98974391	+	543.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001177303, exon 9 of 9)	3' UTR (NM_001177303, exon 9 of 9)	9019.0	NM_001361954	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-47269332-1	chr18	47268832	47269832	+	543.0	f1_balb.idr	intron (NM_001311097, intron 17 of 17)	intron (NM_001311097, intron 17 of 17)	99536.0	NM_018744	20358.0	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-7967299-1	chr10	7966799	7967799	+	543.0	f1_balb.idr	Intergenic	Intergenic	-11176.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0.0	1.0	1.0	0.0	2.0	1.0
Merged-chr6-71908171-1	chr6	71907671	71908671	+	543.0	f1_balb.idr	promoter-TSS (NM_009088)	promoter-TSS (NM_009088)	591.0	NR_155285	69956.0	Mm.30256	NM_027275	ENSMUSG00000063884	Ptcd3	2610034F17Rik|2810422B04Rik|AA589622|AU045708|MRP-S39	pentatricopeptide repeat domain 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-130827485-1	chr7	130826985	130827985	+	543.0	f1_balb.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-38239.0	NM_133942	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-113865867-1	chr11	113865367	113866367	+	543.0	f0_balb.idr	intron (NM_172800, intron 12 of 44)	intron (NM_172800, intron 12 of 44)	-114052.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78346367-1	chr15	78345867	78346867	+	543.0	f1_balb.idr	intron (NM_001358854, intron 11 of 14)	intron (NM_001358854, intron 11 of 14)	-2232.0	NR_106138	102466845.0		NR_106138	ENSMUSG00000099059	Mir7676-2	Gm27790|mmu-mir-7676-2	microRNA 7676-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-24537110-1	chr4	24536610	24537610	+	543.0	f1_c57bl6.idr	intron (NR_149739, intron 13 of 24)	Lx3A|LINE|L1	40659.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr15-81927271-1	chr15	81926771	81927771	+	543.0	f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-1058.0	NM_030229	78929.0	Mm.215115	NM_030229	ENSMUSG00000022476	Polr3h	5031409G22Rik|RPC8	polymerase (RNA) III (DNA directed) polypeptide H	protein-coding	0.0	0.0	0.0	1.0	0.0	3.0
Merged-chr8-94436386-1	chr8	94435886	94436886	+	543.0	f1_balb.idr	Intergenic	Intergenic	-1283.0	NR_015514	320377.0	Mm.486022	NR_015514		9330175E14Rik	A630085K21	RIKEN cDNA 9330175E14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100762471-1	chr11	100761971	100762971	+	543.0	f1_balb.idr	intron (NM_010410, intron 1 of 1)	intron (NM_010410, intron 1 of 1)	460.0	NM_010410	15171.0	Mm.10096	NM_010410	ENSMUSG00000045471	Hcrt	PPOX	hypocretin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-107599635-1	chr7	107599135	107600135	+	543.0	f0_balb.idr	intron (NM_008905, intron 1 of 24)	intron (NM_008905, intron 1 of 24)	4584.0	NM_008905	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-8559116-1	chr11	8558616	8559616	+	543.0	f1_c57bl6.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	105419.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.0	0.0	0.5	1.0	2.0	2.5
Merged-chr13-49342861-1	chr13	49342361	49343361	+	543.0	f1_c57bl6.idr	intron (NM_001039179, intron 1 of 6)	MIRb|SINE|MIR	1312.0	NM_001039180	76895.0	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	BICD cargo adaptor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-47459694-1	chr19	47459194	47460194	+	543.0	f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	4717.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	9.0	9.0	12.5	13.0	25.0	25.0
Merged-chr1-89577881-2	chr1	89577381	89578381	+	543.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	106011.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-68046009-1	chr3	68045509	68046509	+	543.0	f0_balb.idr	intron (NM_001113419, intron 2 of 10)	intron (NM_001113419, intron 2 of 10)	-18793.0	NM_001113420	30953.0	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31128721-1	chr6	31128221	31129221	+	543.0	f1_balb.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-65628.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-123442399-1	chr8	123441899	123442899	+	543.0	f1_balb.idr	promoter-TSS (NM_001253783)	promoter-TSS (NM_001253783)	-557.0	NM_001253784	23854.0	Mm.275127	NM_054046	ENSMUSG00000001482	Def8	AI449518|D8Ertd713e|DEF-8	differentially expressed in FDCP 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-73749914-1	chr15	73749414	73750414	+	543.0	f1_balb.idr	intron (NM_008975, intron 1 of 5)	intron (NM_008975, intron 1 of 5)	1888.0	NM_008975	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-12378389-1	chr2	12377889	12378889	+	543.0	f1_balb.idr	intron (NR_149731, intron 1 of 5)	(CA)n|Simple_repeat|Simple_repeat	41071.0	NM_001355537	66960.0	Mm.34059	NM_024185	ENSMUSG00000026767	Mindy3	1810041E18Rik|2310047O13Rik|5830410F13Rik|AI447827|AW111958|Fam188a	MINDY lysine 48 deubiquitinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-94654124-1	chr9	94653624	94654624	+	543.0	f1_balb.idr	Intergenic	Intergenic	-15768.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-165612912-1	chr1	165612412	165613412	+	543.0	f0_balb.idr	intron (NM_001083897, intron 1 of 5)	RLTR19-int|LTR|ERVK	21629.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13151005-1	chr8	13150505	13151505	+	543.0	f1_balb.idr	Intergenic	Intergenic	-8156.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-124496599-1	chr5	124496099	124497099	+	543.0	f1_c57bl6.idr	intron (NM_021430, intron 6 of 6)	MLT1C|LTR|ERVL-MaLR	13444.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-112126063-1	chr12	112125563	112126563	+	543.0	f1_balb.idr	intron (NM_001081169, intron 13 of 14)	(TG)n|Simple_repeat|Simple_repeat	-4817.0	NR_029590	387199.0		NR_029590	ENSMUSG00000065574	Mir203	Mirn203|mir-203|mmu-mir-203	microRNA 203	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141078857-1	chr4	141078357	141079357	+	543.0	f1_c57bl6.idr	promoter-TSS (NM_025383)	promoter-TSS (NM_025383)	-500.0	NM_025383	66147.0	Mm.21187	NM_025383	ENSMUSG00000028923	Necap2	1110005F07Rik|AA409105|C78898|NECAP-2	NECAP endocytosis associated 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-53468867-2	chr10	53468367	53469367	+	543.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50122.0	NR_037973	100502868.0	Mm.297722	NR_037973	ENSMUSG00000112739	Gm20597	B230314j19	predicted gene, 20597	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132840390-1	chr4	132839890	132840890	+	543.0	f1_c57bl6.idr	intron (NM_001355198, intron 2 of 6)	intron (NM_001355198, intron 2 of 6)	2744.0	NM_001355198	100336.0	Mm.105230	NM_146154	ENSMUSG00000028882	Ppp1r8	6330548N22Rik|AU044684|NIPP1	protein phosphatase 1, regulatory (inhibitor) subunit 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-59340177-1	chr9	59339677	59340677	+	543.0	f0_c57.idr	intron (NR_153195, intron 5 of 15)	intron (NR_153195, intron 5 of 15)	13331.0	NM_001359558	102774.0	Mm.200714	NM_175325	ENSMUSG00000025235	Bbs4	AW537059|AW742241|D9Ertd464e	Bardet-Biedl syndrome 4 (human)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-52444608-1	chr3	52444108	52445108	+	543.0	f0_balb.idr	Intergenic	Intergenic	-72356.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155052327-1	chr2	155051827	155052827	+	543.0	f1_balb.idr	Intergenic	Intergenic	22170.0	NM_016661	269378.0	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	10.0	14.5	8.0	6.0	3.5	5.0
Merged-chr11-32570067-2	chr11	32569567	32570567	+	543.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	36801.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115374813-1	chr6	115374313	115375313	+	543.0	f1_balb.idr	intron (NM_001308354, intron 1 of 7)	intron (NM_001308354, intron 1 of 7)	12464.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97021514-1	chr11	97021014	97022014	+	543.0	f1_c57bl6.idr	non-coding (NR_133649, exon 1 of 2)	non-coding (NR_133649, exon 1 of 2)	4904.0	NR_133649	100127433.0	Mm.156282	NR_133649	ENSMUSG00000087067	Gm11532	Sp6os	predicted gene 11532	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69658718-1	chr11	69658218	69659218	+	543.0	f1_balb.idr	intron (NM_011900, intron 2 of 6)	intron (NM_011900, intron 2 of 6)	3681.0	NM_009235	20670.0	Mm.347499	NM_009235	ENSMUSG00000041287	Sox15	-	SRY (sex determining region Y)-box 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30130328-2	chr2	30129828	30130828	+	543.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-3418.0	NM_146252	70296.0	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39242324-2	chr6	39241824	39242824	+	543.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35551.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-26360077-1	chr15	26359577	26360577	+	543.0	f1_balb.idr	intron (NM_001310774, intron 2 of 2)	intron (NM_001310774, intron 2 of 2)	51029.0	NM_001310774	211147.0	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-10974075-1	chr16	10973575	10974575	+	543.0	f1_balb.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	19046.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116076053-1	chr11	116075553	116076553	+	543.0	f1_c57bl6.idr	intron (NM_001009573, intron 6 of 32)	intron (NM_001009573, intron 6 of 32)	1908.0	NM_001009573	70450.0	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-82441803-1	chr12	82441303	82442303	+	543.0	f0_balb.idr	intron (NM_001167983, intron 21 of 23)	RLTR31D_MM|LTR|ERVK	130454.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-100950024-1	chr7	100949524	100950524	+	543.0	f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	14342.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	4.0	28.0	12.5	12.5	7.5	20.5
Merged-chr9-118656294-1	chr9	118655794	118656794	+	543.0	f1_balb.idr	intron (NM_133721, intron 5 of 27)	B4|SINE|B4	49585.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	4.5	4.5	0.0	4.5	4.5
Merged-chr15-76453462-1	chr15	76452962	76453962	+	543.0	f1_c57bl6.idr	TTS (NM_175457)	TTS (NM_175457)	-3976.0	NM_198885	20289.0	Mm.322821	NM_198885	ENSMUSG00000034161	Scx	BB114693|Bhlha41|Scl	scleraxis	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-12591704-1	chr19	12591204	12592204	+	543.0	f1_c57bl6.idr	intron (NR_015503, intron 1 of 1)	intron (NR_015503, intron 1 of 1)	4862.0	NR_015503	74333.0	Mm.329744	NR_015503	ENSMUSG00000086213	A330040F15Rik	-	RIKEN cDNA A330040F15 gene	ncRNA	5.0	26.0	10.5	3.5	1.0	2.0
Merged-chr10-31250391-1	chr10	31249891	31250891	+	543.0	f1_balb.idr	Intergenic	Intergenic	-63014.0	NM_027168	69692.0	Mm.245537	NM_027168	ENSMUSG00000000295	Hddc2	2310057G13Rik	HD domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79764311-1	chr10	79763811	79764811	+	543.0	f1_c57bl6.idr	intron (NR_027505, intron 1 of 7)	intron (NR_027505, intron 1 of 7)	2641.0	NM_144528	70294.0	Mm.466670	NM_144528	ENSMUSG00000035890	Rnf126	2610010O19Rik	ring finger protein 126	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-128757652-1	chr2	128757152	128758152	+	543.0	f1_balb.idr	intron (NM_008587, intron 6 of 18)	Lx8|LINE|L1	58737.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	1.5	4.5	3.0	0.0	0.0	0.0
Merged-chr9-90107928-1	chr9	90107428	90108428	+	543.0	f1_balb.idr	intron (NM_001039147, intron 2 of 12)	intron (NM_001039147, intron 2 of 12)	6892.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	11.5	25.5	15.5	5.5	8.0	2.0
Merged-chr5-32461248-1	chr5	32460748	32461748	+	543.0	f1_c57bl6.idr	intron (NM_172707, intron 1 of 7)	intron (NM_172707, intron 1 of 7)	2278.0	NM_172707	19046.0	Mm.241931	NM_172707	ENSMUSG00000014956	Ppp1cb	1200010B19	protein phosphatase 1, catalytic subunit, beta isoform	protein-coding	0.0	6.0	4.5	0.0	0.5	3.0
Merged-chr19-53797099-1	chr19	53796599	53797599	+	543.0	f1_c57bl6.idr	intron (NM_001170847, intron 1 of 13)	intron (NM_001170847, intron 1 of 13)	-95132.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-79532151-1	chr11	79531651	79532651	+	543.0	f1_c57bl6.idr	intron (NM_010897, intron 36 of 57)	intron (NM_010897, intron 36 of 57)	-1542.0	NM_010161	14017.0	Mm.439665	NM_010161	ENSMUSG00000078771	Evi2a	AW491894|Evi-2|Evi2	ecotropic viral integration site 2a	protein-coding	0.0	1.5	11.5	1.5	1.5	3.0
Merged-chr5-120789342-1	chr5	120788842	120789842	+	543.0	f1_c57bl6.idr	intron (NM_001347450, intron 3 of 5)	B4A|SINE|B4	6188.0	NM_001347450	231699.0	Mm.379383	NM_145210	ENSMUSG00000066867	Oas1e	C87484|oasl7	2'-5' oligoadenylate synthetase 1E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-6562611-1	chr2	6562111	6563111	+	543.0	f1_c57bl6.idr	intron (NM_001110232, intron 11 of 15)	L1M4b|LINE|L1	159051.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-56402581-1	chr14	56402081	56403081	+	543.0	f0_c57.idr	promoter-TSS (NM_001033043)	promoter-TSS (NM_001033043)	-116.0	NM_001033043	30054.0	Mm.287783	NM_001033043	ENSMUSG00000000365	Rnf17	MMIP-2|Mmip2|TDRD4	ring finger protein 17	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-92331354-1	chr5	92330854	92331854	+	543.0	f1_balb.idr	promoter-TSS (NM_001310664)	promoter-TSS (NM_001310664)	-473.0	NM_001310664	109979.0	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	0.0	4.5	1.0	2.0	7.5	10.5
Merged-chr6-85581784-1	chr6	85581284	85582284	+	543.0	f1_balb.idr	Intergenic	ERVL-B4-int|LTR|ERVL	-5747.0	NM_145223	236266.0	Mm.246967	NM_145223	ENSMUSG00000063810	Alms1	bbb	ALMS1, centrosome and basal body associated	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69911020-1	chr11	69910520	69911520	+	543.0	f1_c57bl6.idr	intron (NM_001013414, intron 23 of 28)	intron (NM_001013414, intron 23 of 28)	-3014.0	NM_001357906	56310.0	Mm.477738	NM_019726	ENSMUSG00000023170	Gps2	AI505953|GPS-2	G protein pathway suppressor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-108668493-1	chr5	108667993	108668993	+	543.0	f1_c57bl6.idr	intron (NM_008325, intron 1 of 14)	intron (NM_008325, intron 1 of 14)	6303.0	NM_001310692	231583.0	Mm.440571	NM_174870	ENSMUSG00000046959	Slc26a1	Sat1	solute carrier family 26 (sulfate transporter), member 1	protein-coding	12.5	29.0	36.0	20.5	40.5	21.0
Merged-chr1-171070972-1	chr1	171070472	171071472	+	543.0	f1_balb.idr	Intergenic	Intergenic	-6320.0	NR_106103	102466998.0		NR_106103	ENSMUSG00000099119	Mir6546	Gm27408|mmu-mir-6546	microRNA 6546	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-180981468-1	chr1	180980968	180981968	+	543.0	f1_c57bl6.idr	Intergenic	Intergenic	36101.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	0.0	0.0	2.0	0.0	3.5	2.5
Merged-chr10-95506254-2	chr10	95505754	95506754	+	543.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4305.0	NM_001359477	67270.0	Mm.30008	NM_026065	ENSMUSG00000062981	Mrpl42	2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|L42mt|MRP-L31|MRP-L42|MRP-S32|PTD007|Rpml31|S32mt	mitochondrial ribosomal protein L42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-29702630-1	chr2	29702130	29703130	+	543.0	f1_balb.idr	exon (NM_001039087, exon 10 of 26)	exon (NM_001039087, exon 10 of 26)	-58898.0	NM_001177392	433416.0	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	-	predicted gene 13547	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-76964340-1	chr12	76963840	76964840	+	543.0	f1_balb.idr	Intergenic	Intergenic	-2092.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-61229570-1	chr19	61229070	61230070	+	543.0	f1_balb.idr	Intergenic	RMER17A|LTR|ERVK	-1152.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-47787733-1	chr9	47787233	47788233	+	543.0	f0_balb.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	30475.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	0.0	3.0	1.5	4.5	8.0	6.0
Merged-chr19-8800168-1	chr19	8799668	8800668	+	543.0	f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-1611.0	NM_026329	67710.0	Mm.22117	NM_026329	ENSMUSG00000071662	Polr2g	2410046K11Rik|A230108L04Rik|C76415|RBP7|Rpo2-7l	polymerase (RNA) II (DNA directed) polypeptide G	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-74637611-1	chr11	74637111	74638111	+	543.0	f1_balb.idr	intron (NM_001013784, intron 3 of 3)	intron (NM_001013784, intron 3 of 3)	-11884.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	3.5	13.5	6.5	6.5	7.0	14.0
Merged-chr4-152154753-1	chr4	152154253	152155253	+	543.0	f1_c57bl6.idr	Intergenic	(TTTTTG)n|Simple_repeat|Simple_repeat	-2546.0	NM_207687	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-26718438-2	chr19	26717938	26718938	+	543.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011416, intron 26 of 32)	intron (NM_011416, intron 26 of 32)	-29727.0	NM_001347439	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84640490-1	chr8	84639990	84640990	+	543.0	f1_c57bl6.idr	TTS (NM_007578)	TTS (NM_007578)	22362.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.5	5.5	3.0	0.5	16.5	6.0
Merged-chr16-94066384-1	chr16	94065884	94066884	+	543.0	f0_balb.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-18876.0	NM_011377	20465.0	Mm.4775	NM_011377	ENSMUSG00000062713	Sim2	bHLHe15	single-minded family bHLH transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73325652-1	chr12	73325152	73326152	+	543.0	f1_balb.idr	intron (NM_001037717, intron 5 of 15)	intron (NM_001037717, intron 5 of 15)	38804.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	4.5	0.0	7.5	8.0	11.0	2.0
Merged-chr5-65866732-1	chr5	65866232	65867232	+	543.0	f1_c57bl6.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	3163.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-86393781-2	chr1	86393281	86394281	+	543.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4420.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-36870202-1	chr17	36869702	36870702	+	543.0	f1_balb.idr	exon (NM_011280, exon 1 of 7)	exon (NM_011280, exon 1 of 7)	628.0	NM_011280	19824.0	Mm.299155	NM_011280	ENSMUSG00000073400	Trim10	AI324236|BB139825|Herf1|Rnf9	tripartite motif-containing 10	protein-coding	11.0	0.0	1.0	0.0	6.0	0.0
Merged-chr1-82235665-1	chr1	82235165	82236165	+	543.0	f0_balb.idr	3' UTR (NM_010570, exon 2 of 2)	3' UTR (NM_010570, exon 2 of 2)	55774.0	NM_010570	16367.0	Mm.4952	NM_010570	ENSMUSG00000055980	Irs1	G972R|IRS-1	insulin receptor substrate 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-5206303-1	chr16	5205803	5206803	+	543.0	f0_balb.idr	Intergenic	RLTR12B2|LTR|ERVK	-2291.0	NR_027804	27426.0	Mm.215641	NM_013796	ENSMUSG00000023143	Nagpa	AI596180|UCE	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-169736182-1	chr2	169735682	169736682	+	543.0	f1_c57bl6.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	102536.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	1.0	0.0	0.0	3.0	3.0	14.0
Merged-chr19-4003791-1	chr19	4003291	4004291	+	543.0	f1_c57bl6.idr	exon (NM_021791, exon 2 of 11)	exon (NM_021791, exon 2 of 11)	406.0	NM_021791	60425.0	Mm.266972	NM_021791	ENSMUSG00000024871	Doc2g	D830013O18Rik	double C2, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-111875084-1	chr10	111874584	111875584	+	543.0	f1_balb.idr	promoter-TSS (NR_046029)	promoter-TSS (NR_046029)	-708.0	NR_046029	629206.0	Mm.391444	NR_046029	ENSMUSG00000112533	Gm20758	-	predicted gene, 20758	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-82447539-1	chr1	82447039	82448039	+	543.0	f1_balb.idr	Intergenic	Intergenic	108490.0	NM_001122685	76867.0	Mm.226994	NM_029777	ENSMUSG00000026142	Rhbdd1	4930418P06Rik|RRP4|mRHBDD1	rhomboid domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-120611136-2	chr5	120610636	120611636	+	543.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133908, intron 3 of 3)	intron (NM_133908, intron 3 of 3)	1453.0	NM_029096	100764.0	Mm.9654	NM_029096	ENSMUSG00000029600	Rita1	1110008J03Rik|AI853657|C86297|Rita	RBPJ interacting and tubulin associated 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-111067209-1	chr9	111066709	111067709	+	543.0	f1_balb.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-9691.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147934765-1	chr4	147934265	147935265	+	543.0	f1_c57bl6.idr	intron (NM_011122, intron 1 of 18)	intron (NM_011122, intron 1 of 18)	2011.0	NM_011122	18822.0	Mm.23951	NM_011122	ENSMUSG00000019055	Plod1	2410042F05Rik|AI854890|AV007929|Lh1|Plod	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-121417187-1	chr2	121416687	121417687	+	543.0	f1_c57bl6.idr	intron (NM_007952, intron 1 of 12)	B4A|SINE|B4	3285.0	NM_007952	14827.0	Mm.263177	NM_007952	ENSMUSG00000027248	Pdia3	58kDa|ERp57|ERp60|ERp61|Erp|Grp58|PDI|PDI-Q2|PI-PLC|PLC[a]|Plca	protein disulfide isomerase associated 3	protein-coding	6.0	0.5	8.0	4.5	10.5	13.0
Merged-chr3-65002784-1	chr3	65002284	65003284	+	543.0	f0_balb.idr	intron (NM_001357358, intron 1 of 13)	intron (NM_001357358, intron 1 of 13)	53572.0	NM_001357358	16497.0	Mm.316402	NM_010597	ENSMUSG00000027827	Kcnab1	Akr8a8|Kvbeta1.1|mKv(beta)1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-79321148-1	chr15	79320648	79321648	+	543.0	f1_balb.idr	intron (NM_016915, intron 1 of 15)	B2_Mm2|SINE|B2	7223.0	NM_016915	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-58861988-1	chr1	58861488	58862488	+	543.0	f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	59486.0	NM_001277926	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	5.5	0.0	0.5	2.5	1.0	1.0
Merged-chr6-76268679-2	chr6	76268179	76269179	+	543.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-973798.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	8.5	13.0	12.0	17.0	31.0	10.0
Merged-chr4-53209405-1	chr4	53208905	53209905	+	543.0	f0_balb.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-36791.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-58342247-1	chr7	58341747	58342747	+	543.0	f1_balb.idr	Intergenic	Intergenic	-315955.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	1.0	2.0	3.0	1.0	5.5	0.0
Merged-chr8-104540611-2	chr8	104540111	104541111	+	543.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301165)	promoter-TSS (NM_001301165)	-196.0	NM_053070	12354.0	Mm.129265	NM_053070	ENSMUSG00000031883	Car7	AV343731|Ca7	carbonic anhydrase 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-93604959-1	chr2	93604459	93605459	+	543.0	f1_c57bl6.idr	Intergenic	Intergenic	-37475.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	0.0	1.5	4.0	0.0	2.5	0.0
Merged-chr8-84842250-1	chr8	84841750	84842750	+	543.0	f1_balb.idr	3' UTR (NM_007591, exon 9 of 9)	3' UTR (NM_007591, exon 9 of 9)	-1585.0	NM_009010	19358.0	Mm.255539	NM_009010	ENSMUSG00000003813	Rad23a	2310040P19Rik|AL024030|HR23A|mHR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141864742-1	chr4	141864242	141865242	+	543.0	f1_c57bl6.idr	intron (NM_025994, intron 1 of 3)	MTD|LTR|ERVL-MaLR	10178.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	8.5	13.0	5.0	0.0	6.0	3.0
Merged-chr7-141486309-1	chr7	141485809	141486809	+	543.0	f1_balb.idr	intron (NM_001252588, intron 2 of 7)	intron (NM_001252588, intron 2 of 7)	9929.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-34442742-1	chr10	34442242	34443242	+	543.0	f1_balb.idr	Intergenic	Intergenic	-24191.0	NM_001347463	319638.0	Mm.73467	NM_176968	ENSMUSG00000039480	Nt5dc1	6030401B09Rik|AW987726|Nt5c2l1	5'-nucleotidase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-110711673-1	chr8	110711173	110712173	+	543.0	f1_balb.idr	exon (NM_146216, exon 16 of 19)	exon (NM_146216, exon 16 of 19)	-9803.0	NM_198625	244654.0	Mm.490385	NM_198625	ENSMUSG00000033763	Mtss1l	ABBA	metastasis suppressor 1-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-59193895-1	chr11	59193395	59194395	+	543.0	f1_c57bl6.idr	Intergenic	Intergenic	-1943.0	NM_008193	14923.0	Mm.3624	NM_008193	ENSMUSG00000020444	Guk1	AA409738|AL033299|AL033300|AV026611|Gmk|Guk-1	guanylate kinase 1	protein-coding	9.5	1.5	1.5	0.0	9.0	7.5
Merged-chr3-4092642-1	chr3	4092142	4093142	+	543.0	f1_balb.idr	Intergenic	L1Md_F|LINE|L1	584612.0	NM_013920	30942.0	Mm.330897	NM_013920	ENSMUSG00000017688	Hnf4g	NR2A2	hepatocyte nuclear factor 4, gamma	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-102928107-2	chr14	102927607	102928607	+	543.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54525.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-37292076-1	chr11	37291576	37292576	+	543.0	f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-347835.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-122909115-1	chr8	122908615	122909615	+	543.0	f1_balb.idr	intron (NM_001081379, intron 3 of 12)	intron (NM_001081379, intron 3 of 12)	60741.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-60827013-1	chr18	60826513	60827513	+	543.0	f1_balb.idr	intron (NM_011552, intron 16 of 24)	intron (NM_011552, intron 16 of 24)	14937.0	NR_039567	100628611.0		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.0	5.5	0.0	5.5	0.0	0.0
Merged-chr7-18957547-1	chr7	18957047	18958047	+	543.0	f1_c57bl6.idr	exon (NM_001029877, exon 4 of 4)	exon (NM_001029877, exon 4 of 4)	-29977.0	NM_194064	378430.0	Mm.277153	NM_194064	ENSMUSG00000051965	Nanos2	nos2	nanos C2HC-type zinc finger 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-13868811-1	chr8	13868311	13869311	+	543.0	f1_c57bl6.idr	promoter-TSS (NM_181854)	promoter-TSS (NM_181854)	-830.0	NM_181854	101994.0	Mm.289346	NM_181854	ENSMUSG00000047710	Champ1	AA675043|AI116001|D8Ertd457e|D8Ertd569e|Zfp828|Znf828|mKIAA1802	chromosome alignment maintaining phosphoprotein 1	protein-coding	3.0	0.0	2.0	3.5	0.0	2.5
Merged-chr11-21212841-2	chr11	21212341	21213341	+	543.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26191.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0.0	3.0	1.5	0.0	0.0	2.5
Merged-chr6-38946679-1	chr6	38946179	38947179	+	543.0	f1_balb.idr	intron (NM_011539, intron 1 of 12)	L1_Mus3|LINE|L1	27693.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-81211910-1	chr7	81211410	81212410	+	543.0	f0_balb.idr	Intergenic	Intergenic	-1894.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	4.0	12.5	11.5	4.0	12.5	12.0
Merged-chr17-23735256-1	chr17	23734756	23735756	+	543.0	f1_balb.idr	TTS (NM_023824)	TTS (NM_023824)	5074.0	NM_023824	76498.0	Mm.491253	NM_023824	ENSMUSG00000023909	Paqr4	1500004C10Rik	progestin and adipoQ receptor family member IV	protein-coding	2.5	0.0	2.0	1.0	0.0	0.5
Merged-chr11-109615344-1	chr11	109614844	109615844	+	543.0	f1_balb.idr	Intergenic	Intergenic	-3955.0	NM_145940	52639.0	Mm.35817	NM_145940	ENSMUSG00000041895	Wipi1	4930533H01Rik|AW411817|D11Ertd498e	WD repeat domain, phosphoinositide interacting 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-58668197-1	chr2	58667697	58668697	+	543.0	f0_c57.idr	intron (NM_001289660, intron 1 of 7)	intron (NM_001289660, intron 1 of 7)	-86987.0	NM_001289659	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-47263484-1	chr4	47262984	47263984	+	543.0	f1_c57bl6.idr	intron (NM_009928, intron 11 of 39)	intron (NM_009928, intron 11 of 39)	55472.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-68778774-1	chr3	68778274	68779274	+	543.0	f0_balb.idr	Intergenic	Intergenic	17279.0	NR_153374	102639225.0	Mm.109095	NR_153374	ENSMUSG00000102936	Gm35584	-	predicted gene, 35584	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-145655318-1	chr3	145654818	145655818	+	543.0	f1_balb.idr	Intergenic	Intergenic	-5333.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-3701949-1	chr19	3701449	3702449	+	543.0	f1_balb.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-6344.0	NM_001358256	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-63720851-2	chr9	63720351	63721351	+	543.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	37143.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-40479704-2	chr16	40479204	40480204	+	543.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361281, intron 1 of 8)	intron (NM_001361281, intron 1 of 8)	495340.0	NM_001361281	268890.0	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Gm29907|Lam|Lamp	limbic system-associated membrane protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-145913448-2	chr3	145912948	145913948	+	543.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10814.0	NM_009740	12042.0	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98265248-2	chr11	98264748	98265748	+	543.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2642.0	NR_039579	100628613.0		NR_039579	ENSMUSG00000093176	Mir5119	mmu-mir-5119|mu-mir-5119	microRNA 5119	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-13673478-1	chr9	13672978	13673978	+	543.0	f0_balb.idr	intron (NM_173776, intron 1 of 3)	intron (NM_173776, intron 1 of 3)	11018.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-11554532-1	chr2	11554032	11555032	+	543.0	f0_balb.idr	promoter-TSS (NM_001177758)	promoter-TSS (NM_001177758)	-603.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-65843101-1	chr17	65842601	65843601	+	543.0	f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	41822.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	6.0	0.0	7.5	1.5	0.0	11.5
Merged-chr4-130824487-1	chr4	130823987	130824987	+	543.0	f1_balb.idr	3' UTR (NM_011520, exon 5 of 5)	3' UTR (NM_011520, exon 5 of 5)	31950.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126761718-1	chr7	126761218	126762218	+	543.0	f1_c57bl6.idr	intron (NM_011952, intron 2 of 8)	intron (NM_011952, intron 2 of 8)	2092.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-102279194-2	chr4	102278694	102279694	+	543.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177983, intron 1 of 5)	intron (NM_001177983, intron 1 of 5)	24255.0	NM_019840	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	4.0	2.0	0.0	2.0	11.0	1.0
Merged-chr6-142845414-1	chr6	142844914	142845914	+	543.0	f1_balb.idr	intron (NM_011374, intron 4 of 4)	intron (NM_011374, intron 4 of 4)	31183.0	NR_045707	665037.0	Mm.401493	NR_045707	ENSMUSG00000072683	Gm7457	EG665037	predicted gene 7457	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-48046441-1	chr4	48045941	48046941	+	543.0	f0_c57.idr	intron (NM_015743, intron 1 of 7)	intron (NM_015743, intron 1 of 7)	1136.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-41632653-1	chr11	41632153	41633153	+	543.0	f1_balb.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	368061.0	NM_177408	14406.0	Mm.5309	NM_008073	ENSMUSG00000020436	Gabrg2	GABAA-R|Gabrg-2|gamma2	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	protein-coding	0.0	0.5	1.5	0.0	0.5	1.5
Merged-chr7-92978494-1	chr7	92977994	92978994	+	543.0	f1_balb.idr	Intergenic	Intergenic	-101385.0	NM_021427	58238.0	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-63634517-1	chr13	63634017	63635017	+	543.0	f1_c57bl6.idr	Intergenic	Intergenic	-61057.0	NM_001328514	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	9.0	48.0	23.0	1.0	35.0	11.0
Merged-chr5-143729548-1	chr5	143729048	143730048	+	543.0	f1_c57bl6.idr	intron (NM_029749, intron 1 of 17)	intron (NM_029749, intron 1 of 17)	2732.0	NM_029749	76800.0	Mm.259620	NM_029749	ENSMUSG00000051306	Usp42	2410140K03Rik|3110031A07Rik|A630018G05Rik|D5Ertd591e	ubiquitin specific peptidase 42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65345323-1	chr9	65344823	65345823	+	543.0	f1_c57bl6.idr	promoter-TSS (NM_016688)	promoter-TSS (NM_016688)	-745.0	NM_016688	50996.0	Mm.29193	NM_016688	ENSMUSG00000041837	Pdcd7	C80112|ES18	programmed cell death 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-63776462-1	chr5	63775962	63776962	+	543.0	f1_balb.idr	intron (NM_177006, intron 3 of 6)	intron (NM_177006, intron 3 of 6)	-36033.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	0.0	0.0	1.5	6.0	0.0	0.0
Merged-chr10-34287922-1	chr10	34287422	34288422	+	543.0	f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	5732.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-20376125-1	chr6	20375625	20376625	+	543.0	f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	820783.0	NR_105789	102465192.0		NR_105789	ENSMUSG00000099149	Mir6370	Gm27480|mmu-mir-6370	microRNA 6370	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-35896054-1	chr17	35895554	35896554	+	543.0	f1_balb.idr	exon (NM_001033630, exon 2 of 6)	exon (NM_001033630, exon 2 of 6)	1324.0	NM_001033630	69662.0	Mm.260159	NM_001033630	ENSMUSG00000050705	2310061I04Rik	-	RIKEN cDNA 2310061I04 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-7171757-1	chr7	7171257	7172257	+	543.0	f1_balb.idr	intron (NM_146179, intron 1 of 3)	intron (NM_146179, intron 1 of 3)	404.0	NM_146179	232854.0	Mm.184857	NM_146179	ENSMUSG00000034538	Zfp418	A230102I05Rik	zinc finger protein 418	protein-coding	7.5	2.0	11.0	6.5	5.5	6.0
Merged-chr1-55054905-1	chr1	55054405	55055405	+	543.0	f1_c57bl6.idr	intron (NM_026424, intron 1 of 3)	B3A|SINE|B2	2135.0	NM_001039710	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	21.0	25.0	44.0	2.0	23.0	6.0
Merged-chr18-72038421-1	chr18	72037921	72038921	+	543.0	f1_c57bl6.idr	intron (NM_007831, intron 1 of 28)	intron (NM_007831, intron 1 of 28)	312648.0	NM_007831	13176.0	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0.5	2.0	1.0	1.0	2.0	3.0
Merged-chr6-83384233-1	chr6	83383733	83384733	+	543.0	f1_balb.idr	intron (NM_001347313, intron 5 of 11)	intron (NM_001347313, intron 5 of 11)	16869.0	NR_105793	102465194.0		NR_105793	ENSMUSG00000099045	Mir6374	Gm27292|mmu-mir-6374	microRNA 6374	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-131127402-1	chr2	131126902	131127902	+	543.0	f1_c57bl6.idr	promoter-TSS (NM_028306)	promoter-TSS (NM_028306)	-10.0	NM_028306	72630.0	Mm.277465	NM_028306	ENSMUSG00000074793	Hspa12b	2700081N06Rik	heat shock protein 12B	protein-coding	3.5	3.0	0.5	6.5	3.5	2.5
Merged-chr16-84146955-1	chr16	84146455	84147455	+	543.0	f1_balb.idr	Intergenic	Lx5|LINE|L1	-224188.0	NR_040567	75247.0	Mm.417813	NR_040567		4930553E22Rik	-	RIKEN cDNA 4930553E22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-10874355-1	chr19	10873855	10874855	+	543.0	f1_c57bl6.idr	exon (NM_134142, exon 2 of 4)	exon (NM_134142, exon 2 of 4)	-4576.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-29254430-2	chr19	29253930	29254930	+	543.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008413, intron 2 of 24)	intron (NM_008413, intron 2 of 24)	2627.0	NM_008413	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-70101989-1	chr12	70101489	70102489	+	543.0	f0_balb.idr	intron (NM_001081453, intron 1 of 28)	intron (NM_001081453, intron 1 of 28)	865.0	NM_001081453	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-62618848-1	chr17	62618348	62619348	+	543.0	f1_balb.idr	intron (NM_010109, intron 2 of 3)	intron (NM_010109, intron 2 of 3)	262469.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-70058548-1	chr14	70058048	70059048	+	543.0	f1_balb.idr	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-18897.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-34548689-1	chr19	34548189	34549189	+	543.0	f1_c57bl6.idr	Intergenic	Intergenic	-2005.0	NM_008332	15958.0	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-64704629-1	chr17	64704129	64705129	+	543.0	f1_balb.idr	intron (NM_008549, intron 12 of 21)	intron (NM_008549, intron 12 of 21)	-62482.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-84089168-1	chr7	84088668	84089668	+	543.0	f0_balb.idr	Intergenic	Intergenic	-2663.0	NM_030728	80982.0	Mm.160389	NM_030728	ENSMUSG00000052353	Cemip	12H19.01.T7|6330404C01Rik|9930013L23Rik|AY007814|Kiaa1199	cell migration inducing protein, hyaluronan binding	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-57301847-1	chr4	57301347	57302347	+	543.0	f0_balb.idr	promoter-TSS (NM_011207)	promoter-TSS (NM_011207)	-10.0	NM_011207	545622.0	Mm.246552	NM_011207	ENSMUSG00000038764	Ptpn3	9530011I20Rik|PTP-H1|PTPCL	protein tyrosine phosphatase, non-receptor type 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100116993-1	chr12	100116493	100117493	+	543.0	f1_c57bl6.idr	intron (NM_008947, intron 6 of 9)	MER5B|DNA|hAT-Charlie	4662.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27655508-1	chr17	27655008	27656008	+	543.0	f1_balb.idr	promoter-TSS (NM_001286744)	promoter-TSS (NM_001286744)	-83.0	NM_011861	23969.0	Mm.4926	NM_011861	ENSMUSG00000040276	Pacsin1	A830061D09Rik|H74|mKIAA1379|syndapin	protein kinase C and casein kinase substrate in neurons 1	protein-coding	0.0	0.0	1.5	0.0	2.5	0.0
Merged-chr13-64108482-1	chr13	64107982	64108982	+	543.0	f0_c57.idr	intron (NM_001001321, intron 6 of 11)	intron (NM_001001321, intron 6 of 11)	-19281.0	NM_008291	15487.0	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	13.0	32.0	38.5	7.5	7.0	3.5
Merged-chr9-44317103-1	chr9	44316603	44317603	+	543.0	f1_balb.idr	exon (NM_027909, exon 3 of 14)	exon (NM_027909, exon 3 of 14)	3179.0	NM_001359259	71764.0	Mm.491174	NM_027909	ENSMUSG00000032120	C2cd2l	1300006O23Rik|Tmem24	C2 calcium-dependent domain containing 2-like	protein-coding	0.0	8.0	5.5	6.5	24.0	9.0
Merged-chr2-157841953-1	chr2	157841453	157842453	+	543.0	f1_balb.idr	intron (NM_025680, intron 11 of 15)	intron (NM_025680, intron 11 of 15)	-72700.0	NM_198627	277432.0	Mm.441156	NM_198627	ENSMUSG00000037843	Vstm2l	Gm691	V-set and transmembrane domain containing 2-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-121464244-1	chr1	121463744	121464744	+	543.0	f1_c57bl6.idr	intron (NM_029955, intron 11 of 23)	MTE2a|LTR|ERVL-MaLR	33177.0	NM_029955	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	87.0	104.5	99.5	21.5	32.5	20.5
Merged-chr10-78428139-1	chr10	78427639	78428639	+	543.0	f1_c57bl6.idr	TTS (NM_007793)	TTS (NM_007793)	2469.0	NM_007793	13014.0	Mm.6095	NM_007793	ENSMUSG00000005054	Cstb	AA960480|Stfb	cystatin B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-93618844-1	chr17	93618344	93619344	+	543.0	f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	419676.0	NM_009625	11516.0	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-101259914-1	chr15	101259414	101260414	+	543.0	f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-6932.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	16.0	27.0	19.0	14.5	34.5	26.5
Merged-chr1-72211757-1	chr1	72211257	72212257	+	543.0	f0_balb.idr	intron (NM_001357488, intron 1 of 5)	CpG	550.0	NM_001005423	381269.0	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-8273729-1	chr15	8273229	8274229	+	543.0	f1_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	104623.0	NM_001162906	73692.0	Mm.164436	NM_001162906	ENSMUSG00000039801	2410089E03Rik	4732468D17Rik|Hug|Jbts17|b2b012Clo	RIKEN cDNA 2410089E03 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-39896715-1	chr1	39896215	39897215	+	543.0	f0_c57.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-4198.0	NM_001252202	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25790301-1	chr7	25789801	25790801	+	543.0	f1_balb.idr	Intergenic	Intergenic	-1568.0	NM_001190975	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98891978-1	chr15	98891478	98892478	+	543.0	f1_c57bl6.idr	3' UTR (NM_007857, exon 3 of 3)	3' UTR (NM_007857, exon 3 of 3)	6562.0	NM_007857	13363.0	Mm.324688	NM_007857	ENSMUSG00000023000	Dhh	C78960	desert hedgehog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128083812-1	chr10	128083312	128084312	+	543.0	f0_balb.idr	intron (NM_016774, intron 1 of 9)	CpG	505.0	NM_016774	11947.0	Mm.238973	NM_016774	ENSMUSG00000025393	Atp5b	Atp5f1b	ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	protein-coding	37.0	64.0	55.0	37.0	64.0	55.0
Merged-chr19-3292218-1	chr19	3291718	3292718	+	543.0	f0_c57.idr	intron (NM_172252, intron 6 of 6)	intron (NM_172252, intron 6 of 6)	3298.0	NR_105950	102465594.0		NR_105950	ENSMUSG00000099261	Mir6984	Gm27771|mmu-mir-6984	microRNA 6984	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-25894628-1	chr6	25894128	25895128	+	543.0	f1_c57bl6.idr	Intergenic	B3|SINE|B2	-36798.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-155020273-2	chr2	155019773	155020773	+	543.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015770, intron 1 of 3)	ERVB4_1-I_MM-int|LTR|ERVK	6703.0	NM_015770	50518.0	Mm.315593	NM_015770	ENSMUSG00000027596	a	A<y>|ASIP|ASP|As	nonagouti	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-25471321-2	chr18	25470821	25471821	+	543.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	208427.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-179802658-2	chr1	179802158	179803158	+	543.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026375, intron 1 of 35)	ID4|SINE|ID	1357.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110651263-1	chr5	110650763	110651763	+	543.0	f1_balb.idr	intron (NM_153570, intron 5 of 14)	intron (NM_153570, intron 5 of 14)	2119.0	NM_153570	100608.0	Mm.29960	NM_153570	ENSMUSG00000033294	Noc4l	AI326906	NOC4 like	protein-coding	0.0	0.0	0.5	0.0	5.0	1.0
Merged-chr11-71851938-1	chr11	71851438	71852438	+	543.0	f1_c57bl6.idr	Intergenic	Intergenic	88184.0	NR_045942	73816.0	Mm.390391	NR_045942	ENSMUSG00000085528	4930401O10Rik	-	RIKEN cDNA 4930401O10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43607764-1	chr7	43607264	43608264	+	543.0	f1_balb.idr	intron (NM_001355131, intron 1 of 3)	intron (NM_001355131, intron 1 of 3)	595.0	NM_028913	74400.0	Mm.159188	NM_028913	ENSMUSG00000055102	Zfp819	4930427I11Rik|4933405K07Rik	zinc finger protein 819	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-97178734-2	chr7	97178240	97179240	+	542.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	L1Md_F2|LINE|L1	96989.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-64964167-2	chr12	64963667	64964667	+	542.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025707, intron 1 of 4)	intron (NM_025707, intron 1 of 4)	1369.0	NM_025707	66689.0	Mm.248678	NM_025707	ENSMUSG00000020948	Klhl28	2810440N09Rik|4122402F11Rik|4931401E10Rik|Btbd5	kelch-like 28	protein-coding	2.5	0.0	5.5	2.5	0.0	2.0
Merged-chr12-91852305-2	chr12	91851805	91852805	+	542.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-3148.0	NM_011344	20338.0	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127586840-2	chr10	127586340	127587340	+	542.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 15 of 88)	intron (NM_008512, intron 15 of 88)	34308.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	2.5	10.0	11.5	2.0	16.5	15.5
Merged-chr11-106274418-2	chr11	106273918	106274918	+	542.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1446.0	NM_001130187	83796.0	Mm.21772	NM_031878	ENSMUSG00000078619	Smarcd2	AW322457|Baf60b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-43205686-2	chr7	43205186	43206186	+	542.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8353.0	NM_001177525	100170401.0		NM_001177525		EU599041	TU7	expressed sequence EU599041	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-33400634-2	chr6	33400134	33401134	+	542.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347089, intron 7 of 9)	L1MB7|LINE|L1	151506.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28232099-2	chr17	28231599	28232599	+	542.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011145)	promoter-TSS (NM_011145)	-655.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-80722482-2	chr1	80721982	80722982	+	542.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	MLT1A0|LTR|ERVL-MaLR	36071.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-57815757-2	chr6	57815257	57816257	+	542.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 1 of 4)	L1_Mus2|LINE|L1	9368.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127326873-2	chr10	127326373	127327373	+	542.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001285785, exon 9 of 16)	exon (NM_001285785, exon 9 of 16)	1231.0	NM_001359657	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	0.0	0.0	0.0	0.0	2.0	0.0
Merged-chr4-123965606-2	chr4	123965106	123966106	+	542.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48173.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-17556884-2	chr14	17556384	17557384	+	542.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104076.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-80015042-2	chr10	80014542	80015542	+	542.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013850, exon 45 of 46)	exon (NM_013850, exon 45 of 46)	-1630.0	NM_001142701	70719.0	Mm.243954	NM_027521	ENSMUSG00000035697	Arhgap45	6330406L22Rik|AW539505|Ha-1|Hmha1	Rho GTPase activating protein 45	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-154079845-2	chr1	154079345	154080345	+	542.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-121342.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-90253124-2	chr9	90252624	90253624	+	542.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	Lx8|LINE|L1	17645.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-18015388-2	chr5	18014888	18015888	+	542.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 6 of 7)	intron (NM_001081143, intron 6 of 7)	52818.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-180102780-2	chr2	180102280	180103280	+	542.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133849, exon 2 of 3)	exon (NM_133849, exon 2 of 3)	1627.0	NR_102309	99296.0	Mm.285360	NM_133849	ENSMUSG00000039059	Hrh3	AW049250|H3R|HH3R	histamine receptor H3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-8759288-2	chr19	8758788	8759788	+	542.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016813, intron 1 of 20)	intron (NM_016813, intron 1 of 20)	2171.0	NM_001276704	53319.0	Mm.7271	NM_016813	ENSMUSG00000010097	Nxf1	Mex67|Mvb1|Tap	nuclear RNA export factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24390026-2	chr5	24389526	24390526	+	542.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002897, intron 4 of 13)	Charlie1|DNA|hAT-Charlie	2117.0	NM_001002897	213948.0	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-122538218-2	chr14	122537718	122538718	+	542.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144844, intron 1 of 23)	intron (NM_144844, intron 1 of 23)	3890.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-114648043-2	chr4	114647543	114648543	+	542.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-173677.0	NR_033617	433746.0	Mm.388908	NR_033617	ENSMUSG00000055198	Gm12830	-	predicted gene 12830	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56885597-2	chr17	56885097	56886097	+	542.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030141, intron 12 of 13)	intron (NM_030141, intron 12 of 13)	9964.0	NM_030141	78625.0	Mm.160106	NM_030141	ENSMUSG00000024209	1700061G19Rik	1700026H02|AI507598	RIKEN cDNA 1700061G19 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-99880326-2	chr15	99879826	99880826	+	542.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4870.0	NM_001113545	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-13283184-1	chr11	13282684	13283684	+	542.0	f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-818224.0	NM_001282993	12808.0	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-69672533-1	chr3	69672033	69673033	+	542.0	f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-49522.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	11.0	11.0	0.5	2.5	10.0	3.0
Merged-chr7-90444176-1	chr7	90443676	90444676	+	542.0	f1_c57bl6.idr	non-coding (NR_073436, exon 1 of 2)	non-coding (NR_073436, exon 1 of 2)	1395.0	NR_073438	233490.0	Mm.29496	NM_145151	ENSMUSG00000051451	Crebzf	1110034C16Rik|6330417B10Rik|LAZip|LAZipII|SMILE|Zf	CREB/ATF bZIP transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-3899692-2	chr11	3899192	3900192	+	542.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173745, exon 2 of 2)	3' UTR (NM_173745, exon 2 of 2)	4452.0	NM_173745	75219.0	Mm.32588	NM_173745	ENSMUSG00000047205	Dusp18	4930527G07Rik|AI430870|BB028064|DSP18|DUSP20|LMWDSP20	dual specificity phosphatase 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135931807-1	chr4	135931307	135932307	+	542.0	f1_balb.idr	intron (NM_024243, intron 4 of 7)	intron (NM_024243, intron 4 of 7)	11081.0	NM_024243	71665.0	Mm.439940	NM_024243	ENSMUSG00000028673	Fuca1	0610006A03Rik|9530055J05Rik|Afuc|Fuca	fucosidase, alpha-L- 1, tissue	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72676062-1	chr6	72675562	72676562	+	542.0	f1_c57bl6.idr	intron (NM_001079822, intron 3 of 12)	intron (NM_001079822, intron 3 of 12)	46231.0	NR_040421	100038714.0	Mm.321330	NR_040421		Gm15401	-	predicted gene 15401	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-80730730-1	chr12	80730230	80731230	+	542.0	f0_balb.idr	Intergenic	Intergenic	29985.0	NM_001008423	380768.0	Mm.29367	NM_001008423	ENSMUSG00000062961	Ccdc177	Gm1568	coiled-coil domain containing 177	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-127318528-1	chr1	127318028	127319028	+	542.0	f0_balb.idr	intron (NM_145128, intron 3 of 17)	CT-rich|Low_complexity|Low_complexity	113542.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-88596578-1	chr1	88596078	88597078	+	542.0	f1_balb.idr	Intergenic	Intergenic	45061.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-21138101-1	chr9	21137601	21138601	+	542.0	f1_balb.idr	TTS (NM_016742)	TTS (NM_016742)	-6826.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30561258-1	chr7	30560758	30561758	+	542.0	f1_balb.idr	TTS (NM_025498)	TTS (NM_025498)	-1612.0	NM_001290569	75660.0	Mm.379242	NM_029377	ENSMUSG00000036845	Lin37	1810054G18Rik	lin-37 homolog (C. elegans)	protein-coding	0.0	0.0	2.5	0.0	3.5	1.0
Merged-chr14-30525622-1	chr14	30525122	30526122	+	542.0	f1_c57bl6.idr	3' UTR (NM_133761, exon 10 of 10)	3' UTR (NM_133761, exon 10 of 10)	-23509.0	NM_009388	21881.0	Mm.290692	NM_009388	ENSMUSG00000021957	Tkt	p68	transketolase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94392328-1	chr8	94391828	94392828	+	542.0	f1_c57bl6.idr	exon (NM_022331, exon 6 of 8)	exon (NM_022331, exon 6 of 8)	5899.0	NM_022331	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	2.5	0.0	2.5	0.0	2.0	3.0
Merged-chr18-75605681-1	chr18	75605181	75606181	+	542.0	f1_balb.idr	exon (NM_201354, exon 6 of 12)	exon (NM_201354, exon 6 of 12)	91036.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	7.5	8.5	0.5	0.5	1.5	2.5
Merged-chr11-70661518-1	chr11	70661018	70662018	+	542.0	f1_c57bl6.idr	exon (NM_001276285, exon 9 of 12)	exon (NM_001276285, exon 9 of 12)	4342.0	NM_007933	13808.0	Mm.251322	NM_007933	ENSMUSG00000060600	Eno3	Eno-3|MSE	enolase 3, beta muscle	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-61975436-2	chr15	61974936	61975936	+	542.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9905.0	NM_001177354	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-73322757-1	chr12	73322257	73323257	+	542.0	f0_balb.idr	intron (NM_001037717, intron 5 of 15)	intron (NM_001037717, intron 5 of 15)	35909.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	3.0	8.5	5.0	0.5	4.0	4.0
Merged-chr19-46340388-1	chr19	46339888	46340888	+	542.0	f1_balb.idr	Intergenic	CYRA11_Mm|Unknown|Y-chromosome	-1728.0	NM_001164292	67116.0	Mm.218848	NM_024192	ENSMUSG00000036748	Cuedc2	3010002G01Rik	CUE domain containing 2	protein-coding	5.5	38.0	25.0	3.0	24.0	14.0
Merged-chr14-122019838-1	chr14	122019338	122020338	+	542.0	f1_balb.idr	intron (NM_026861, intron 8 of 8)	MT2B|LTR|ERVL	-14836.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	1.5	0.5	0.5	1.5	0.5	0.5
Merged-chr4-133010661-1	chr4	133010161	133011161	+	542.0	f1_balb.idr	promoter-TSS (NM_146155)	promoter-TSS (NM_146155)	-845.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120101780-1	chr11	120101280	120102280	+	542.0	f1_balb.idr	Intergenic	Intergenic	2846.0	NM_001110242	208501.0	Mm.46699	NM_001110242	ENSMUSG00000078572	Ndufaf8	1810043H04Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-89719537-1	chr12	89719037	89720037	+	542.0	f1_c57bl6.idr	intron (NM_001198587, intron 14 of 19)	intron (NM_001198587, intron 14 of 19)	-92946.0	NM_001252074	18191.0	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-94841629-1	chr3	94841129	94842129	+	542.0	f0_balb.idr	intron (NM_001165948, intron 1 of 18)	intron (NM_001165948, intron 1 of 18)	4062.0	NM_172683	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	8.5	23.0	14.5	11.0	21.0	16.0
Merged-chr4-139689890-1	chr4	139689390	139690390	+	542.0	f1_c57bl6.idr	Intergenic	Intergenic	36352.0	NM_031873	83770.0	Mm.190612	NM_031873	ENSMUSG00000028738	Tas1r2	Gpr71|T1r2|TR2	taste receptor, type 1, member 2	protein-coding	0.5	0.0	1.5	2.5	6.5	1.0
Merged-chr17-34342689-1	chr17	34342189	34343189	+	542.0	f1_balb.idr	intron (NM_010381, intron 3 of 3)	intron (NM_010381, intron 3 of 3)	1956.0	NM_010381	100504404.0	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	1.0	0.5	6.5	3.0	27.5	12.0
Merged-chr1-171578010-1	chr1	171577510	171578510	+	542.0	f1_c57bl6.idr	intron (NM_018729, intron 5 of 8)	intron (NM_018729, intron 5 of 8)	18817.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	3.5	16.0	3.0	0.0	0.0	0.0
Merged-chr3-103211726-1	chr3	103211226	103212226	+	542.0	f1_c57bl6.idr	Intergenic	Intergenic	40071.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	0.0	10.0	10.5	12.0	1.5	2.5
Merged-chr11-109330890-1	chr11	109330390	109331390	+	542.0	f1_balb.idr	Intergenic	Intergenic	-15977.0	NR_027883	67927.0	Mm.394490	NR_027883	ENSMUSG00000099630	1700096J18Rik	-	RIKEN cDNA 1700096J18 gene	ncRNA	0.0	0.0	0.0	0.0	0.5	7.5
Merged-chr16-35855876-1	chr16	35855376	35856376	+	542.0	f1_c57bl6.idr	intron (NM_001039530, intron 6 of 16)	ID_B1|SINE|B4	15506.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-22429121-1	chr16	22428621	22429621	+	542.0	f1_c57bl6.idr	intron (NM_001358428, intron 5 of 12)	intron (NM_001358428, intron 5 of 12)	9247.0	NM_001358428	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0.0	0.0	0.5	0.0	2.0	0.0
Merged-chr10-81580601-1	chr10	81580101	81581101	+	542.0	f1_balb.idr	exon (NM_001252401, exon 7 of 20)	exon (NM_001252401, exon 7 of 20)	5314.0	NM_001252401	21886.0	Mm.38608	NM_019725	ENSMUSG00000034771	Tle2	Grg2|mKIAA4188	transducin-like enhancer of split 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-110613604-1	chr5	110613104	110614104	+	542.0	f0_balb.idr	intron (NR_104449, intron 1 of 5)	ORR1D2|LTR|ERVL-MaLR	10099.0	NR_104449	231605.0	Mm.275748	NM_198306	ENSMUSG00000033316	Galnt9	GalNAc-T9	polypeptide N-acetylgalactosaminyltransferase 9	protein-coding	2.0	0.0	3.5	1.0	1.5	3.0
Merged-chr2-163647594-1	chr2	163647094	163648094	+	542.0	f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-2451.0	NM_012032	26943.0	Mm.218473	NM_012032	ENSMUSG00000017707	Serinc3	AA959945|AA960047|AIGP1|DIFF33|TMS-1|Tde1	serine incorporator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114797857-1	chr11	114797357	114798357	+	542.0	f1_c57bl6.idr	Intergenic	Intergenic	-1067.0	NM_001346772	217302.0	Mm.269127	NM_181749	ENSMUSG00000034677	Gpr142	PGR2	G protein-coupled receptor 142	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-61649081-2	chr18	61648581	61649581	+	542.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029601)	TTS (NR_029601)	177.0	NR_029601	387161.0		NR_029601	ENSMUSG00000065445	Mir143	Mirn143|mir-143|mmu-mir-143	microRNA 143	ncRNA	0.0	1.5	0.5	0.0	1.5	0.5
Merged-chr16-44201395-1	chr16	44200895	44201895	+	542.0	f1_balb.idr	intron (NM_001029889, intron 4 of 7)	intron (NM_001029889, intron 4 of 7)	27998.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-112671349-2	chr13	112670849	112671849	+	542.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178746, intron 2 of 14)	B3|SINE|B2	10583.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-26931740-2	chr2	26931240	26932240	+	542.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011512, intron 1 of 5)	intron (NM_011512, intron 1 of 5)	1771.0	NM_011512	20932.0	Mm.300594	NM_011512	ENSMUSG00000014867	Surf4	AL033340|AL033373|Surf-4	surfeit gene 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96714242-1	chr9	96713742	96714742	+	542.0	f1_c57bl6.idr	intron (NM_001359959, intron 2 of 2)	intron (NM_001359959, intron 2 of 2)	5203.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-11718202-1	chr15	11717702	11718702	+	542.0	f1_balb.idr	Intergenic	Lx3C|LINE|L1	187472.0	NM_008728	18162.0	Mm.25259	NM_008728	ENSMUSG00000022206	Npr3	ANP-C|ANPR-C|EF-2|NPR-C|lgj|stri	natriuretic peptide receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-129822530-1	chr4	129822030	129823030	+	542.0	f1_c57bl6.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	1822.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-77157034-1	chr14	77156534	77157534	+	542.0	f1_balb.idr	5' UTR (NM_172813, exon 1 of 19)	5' UTR (NM_172813, exon 1 of 19)	271.0	NM_172813	239188.0	Mm.441158	NM_172813	ENSMUSG00000022012	Enox1	B230207J08|D230005D02Rik	ecto-NOX disulfide-thiol exchanger 1	protein-coding	0.0	0.0	0.0	5.0	0.5	0.0
Merged-chr6-148734027-1	chr6	148733527	148734527	+	542.0	f1_c57bl6.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	-56027.0	NR_131024	75831.0	Mm.159595	NR_131024	ENSMUSG00000084909	4930528G23Rik	-	RIKEN cDNA 4930528G23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-104053885-1	chr14	104053385	104054385	+	542.0	f1_c57bl6.idr	Intergenic	Intergenic	-26743.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-62366890-1	chr9	62366390	62367390	+	542.0	f0_balb.idr	intron (NM_009672, intron 1 of 6)	intron (NM_009672, intron 1 of 6)	25547.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-63694810-1	chr18	63694310	63695310	+	542.0	f1_c57bl6.idr	Intergenic	RLTR1C|LTR|ERV1	-2451.0	NM_016792	53382.0	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-46358854-1	chr18	46358354	46359354	+	542.0	f1_c57bl6.idr	Intergenic	MT2C_Mm|LTR|ERVL	-46926.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-119632688-2	chr6	119632188	119633188	+	542.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155458, intron 14 of 18)	intron (NR_155458, intron 14 of 18)	-88341.0	NM_009525	22419.0	Mm.321818	NM_009525	ENSMUSG00000030170	Wnt5b	AW545702|Wnt-5b	wingless-type MMTV integration site family, member 5B	protein-coding	5.0	2.5	4.0	3.0	5.0	10.0
Merged-chr11-6596215-1	chr11	6595715	6596715	+	542.0	f1_balb.idr	exon (NM_001190344, exon 10 of 10)	exon (NM_001190344, exon 10 of 10)	9839.0	NM_001081652	192950.0	Mm.337771	NM_001081652	ENSMUSG00000041073	Nacad	D230024G13Rik|mKIAA0363	NAC alpha domain containing	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-24450691-1	chr8	24450191	24451191	+	542.0	f1_c57bl6.idr	Intergenic	Intergenic	-11745.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0.0	0.0	0.0	1.5	0.0	2.0
Merged-chr1-21071254-1	chr1	21070754	21071754	+	542.0	f0_balb.idr	intron (NM_177409, intron 1 of 10)	intron (NM_177409, intron 1 of 10)	7971.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	5.0	12.0	15.5	0.0	2.0	5.5
Merged-chr18-69240511-1	chr18	69240011	69241011	+	542.0	f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-103981.0	NM_013685	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.0	0.0	1.0	0.0	2.0	0.0
Merged-chr9-61966273-1	chr9	61965773	61966773	+	542.0	f1_balb.idr	intron (NM_028748, intron 5 of 7)	intron (NM_028748, intron 5 of 7)	-19474.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-103128821-1	chr11	103128321	103129321	+	542.0	f1_c57bl6.idr	Intergenic	Intergenic	-4518.0	NM_001130516	71059.0	Mm.273871	NM_027658	ENSMUSG00000043372	Hexim2	4933402L21Rik	hexamethylene bis-acetamide inducible 2	protein-coding	0.0	0.0	2.5	0.0	0.0	1.5
Merged-chr10-118105115-1	chr10	118104615	118105615	+	542.0	f1_balb.idr	Intergenic	Intergenic	-36672.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	5.5	6.5	7.5	5.5	5.0	7.0
Merged-chr15-31566773-1	chr15	31566273	31567273	+	542.0	f0_balb.idr	Intergenic	Lx5|LINE|L1	-2060.0	NM_181588	69574.0	Mm.28108	NM_181588	ENSMUSG00000022235	Cmbl	2310016A09Rik	carboxymethylenebutenolidase-like (Pseudomonas)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51563025-1	chr3	51562525	51563525	+	542.0	f1_c57bl6.idr	intron (NR_033624, intron 1 of 4)	B3A|SINE|B2	-2202.0	NM_080793	73251.0	Mm.192111	NM_080793	ENSMUSG00000037111	Setd7	1600028F23Rik|H3K4MT|KMT7|Set7|Set7/9|mKIAA1717	SET domain containing (lysine methyltransferase) 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-93163991-1	chr10	93163491	93164491	+	542.0	f1_c57bl6.idr	intron (NM_146239, intron 1 of 16)	intron (NM_146239, intron 1 of 16)	1206.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	12.5	25.5	19.0	6.0	15.5	18.5
Merged-chr9-80488664-1	chr9	80488164	80489164	+	542.0	f1_balb.idr	Intergenic	RLTR26C_MM|LTR|ERVK	-23226.0	NM_022016	63859.0	Mm.422780	NM_022016	ENSMUSG00000032343	Impg1	A930015H12Rik|IMP150|SPACR	interphotoreceptor matrix proteoglycan 1	protein-coding	0.0	5.0	0.0	0.0	3.5	0.0
Merged-chr7-141950554-1	chr7	141950054	141951054	+	542.0	f1_balb.idr	intron (NM_001009929, intron 1 of 19)	CpG	803.0	NM_001009929	75770.0	Mm.274868	NM_029426	ENSMUSG00000053046	Brsk2	4833424K13Rik|SAD-A|SADA	BR serine/threonine kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27551904-1	chr7	27551404	27552404	+	542.0	f1_c57bl6.idr	intron (NM_001317355, intron 1 of 13)	ID_B1|SINE|B4	1314.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141468705-1	chr4	141468205	141469205	+	542.0	f1_balb.idr	TTS (NM_009541)	TTS (NM_009541)	24032.0	NM_009541	22642.0	Mm.389590	NM_009541	ENSMUSG00000006215	Zbtb17	AA589413|Lp-1|Miz1|Zfp100|mZ13	zinc finger and BTB domain containing 17	protein-coding	3.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-41744247-1	chr5	41743747	41744747	+	542.0	f1_c57bl6.idr	Intergenic	Intergenic	19973.0	NM_007524	12020.0	Mm.2530	NM_007524	ENSMUSG00000049691	Nkx3-2	Bapx1|NKX3.2|Nkx-3.2	NK3 homeobox 2	protein-coding	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr5-107988813-1	chr5	107988313	107989313	+	542.0	f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-1736.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	0.0	0.0	2.0	0.0	0.0	1.0
Merged-chr17-56071891-1	chr17	56071391	56072391	+	542.0	f1_balb.idr	intron (NM_024432, intron 5 of 11)	ORR1C2|LTR|ERVL-MaLR	7442.0	NM_024432	66530.0	Mm.28000	NM_024432	ENSMUSG00000019578	Ubxn6	1200008L11Rik|2210415J11Rik|AU040909|Ubxd1|Ubxdc2	UBX domain protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-145019250-1	chr7	145018750	145019750	+	542.0	f1_c57bl6.idr	Intergenic	Intergenic	-79325.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	2.5	2.0	1.0	0.0	1.0	2.5
Merged-chr19-45529556-1	chr19	45529056	45530056	+	542.0	f1_c57bl6.idr	3' UTR (NM_009771, exon 14 of 14)	3' UTR (NM_009771, exon 14 of 14)	31008.0	NM_001330506	56626.0	Mm.46509	NM_020032	ENSMUSG00000025218	Poll	1110003P06Rik|AV007317	polymerase (DNA directed), lambda	protein-coding	2.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-62482681-1	chr10	62482181	62483181	+	542.0	f1_c57bl6.idr	intron (NM_001358543, intron 1 of 7)	B1F|SINE|Alu	3917.0	NM_001113355	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132766461-1	chr4	132765961	132766961	+	542.0	f1_c57bl6.idr	Intergenic	Intergenic	-1899.0	NM_011284	19891.0	Mm.2870	NM_011284	ENSMUSG00000028884	Rpa2	AA409079|AI325195|AU020965|RPA34|Rf-A2	replication protein A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-137958986-1	chr4	137958486	137959486	+	542.0	f1_balb.idr	intron (NM_199307, intron 18 of 19)	ORR1E|LTR|ERVL-MaLR	-34470.0	NM_001256198	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	0.0	0.0	1.0	0.0	0.0	2.5
Merged-chr13-3666544-1	chr13	3666044	3667044	+	542.0	f1_c57bl6.idr	Intergenic	B3A|SINE|B2	32512.0	NM_001267724	142688.0	Mm.253061	NM_178283	ENSMUSG00000033781	Asb13	2210015B19Rik|6430573K02Rik|Asb-13|C85285	ankyrin repeat and SOCS box-containing 13	protein-coding	0.0	5.0	4.5	0.0	6.0	2.0
Merged-chr15-64824688-1	chr15	64824188	64825188	+	542.0	f1_c57bl6.idr	intron (NM_009623, intron 2 of 17)	intron (NM_009623, intron 2 of 17)	97608.0	NM_001331075	11514.0	Mm.1425	NM_009623	ENSMUSG00000022376	Adcy8	AC8|AW060868	adenylate cyclase 8	protein-coding	4.0	3.5	5.0	0.0	2.0	0.0
Merged-chr4-147334178-1	chr4	147333678	147334678	+	542.0	f1_balb.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	158312.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-69417000-1	chr12	69416500	69417500	+	542.0	f1_balb.idr	Intergenic	Intergenic	44850.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	3.5	1.0	3.0	5.5	0.0	2.5
Merged-chr14-76093647-1	chr14	76093147	76094147	+	542.0	f1_balb.idr	intron (NM_026177, intron 7 of 7)	B2_Mm2|SINE|B2	17168.0	NM_026177	67467.0	Mm.260767	NM_026177	ENSMUSG00000022008	Gpalpp1	1200011I18Rik|Kiaa1704	GPALPP motifs containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-99004509-1	chr7	99004009	99005009	+	542.0	f1_balb.idr	intron (NM_178635, intron 8 of 14)	intron (NM_178635, intron 8 of 14)	136635.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	3.0	3.5	2.5	0.0	3.5	5.0
Merged-chr5-117865172-1	chr5	117864672	117865672	+	542.0	f1_balb.idr	Intergenic	Intergenic	-1667.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-59612809-1	chr15	59612309	59613309	+	542.0	f1_balb.idr	Intergenic	Intergenic	-35845.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	4.5	17.5	14.0	12.0	5.5	13.0
Merged-chr9-45938356-1	chr9	45937856	45938856	+	542.0	f1_c57bl6.idr	3' UTR (NM_172257, exon 26 of 26)	3' UTR (NM_172257, exon 26 of 26)	1234.0	NR_106055	102465659.0		NR_106055	ENSMUSG00000098327	Mir7087	Gm27273|mmu-mir-7087	microRNA 7087	ncRNA	0.0	0.0	0.5	0.0	0.0	0.0
Merged-chr15-75643269-1	chr15	75642769	75643769	+	542.0	f1_c57bl6.idr	Intergenic	Intergenic	26585.0	NM_011759	22701.0	Mm.87210	NM_011759	ENSMUSG00000047003	Zfp41	CTfin92|Zfp-41	zinc finger protein 41	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128706237-1	chr10	128705737	128706737	+	542.0	f1_c57bl6.idr	promoter-TSS (NM_021882)	promoter-TSS (NM_021882)	-21.0	NM_021882	20431.0	Mm.16756	NM_021882	ENSMUSG00000025359	Pmel	D10H12S53E|D12S53Eh|Pmel17|Si|Silv|gp100|gp87	premelanosome protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-153171471-1	chr2	153170971	153171971	+	542.0	f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	ID_B1|SINE|B4	10170.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-96543061-1	chr9	96542561	96543561	+	542.0	f1_c57bl6.idr	intron (NM_053268, intron 23 of 23)	B2_Mm2|SINE|B2	-64386.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-69794504-1	chr11	69794004	69795004	+	542.0	f1_balb.idr	intron (NM_009601, intron 3 of 10)	B3|SINE|B2	1433.0	NM_009601	11443.0	Mm.86425	NM_009601	ENSMUSG00000041189	Chrnb1	Achr-2|Acrb	cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52989441-1	chr13	52988941	52989941	+	542.0	f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-8402.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	0.0	0.0	0.0	0.0	1.5	0.5
Merged-chr12-87203281-1	chr12	87202781	87203781	+	542.0	f1_balb.idr	intron (NM_001290288, intron 2 of 3)	intron (NM_001290288, intron 2 of 3)	2738.0	NM_001290288	238333.0	Mm.302304	NM_001290288	ENSMUSG00000090812	Samd15	Gm263	sterile alpha motif domain containing 15	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-73534253-1	chr7	73533753	73534753	+	542.0	f1_balb.idr	intron (NM_001081345, intron 2 of 38)	B3|SINE|B2	7493.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	9.0	10.0	6.5	3.5	8.0	3.5
Merged-chr19-43584969-1	chr19	43584469	43585469	+	542.0	f0_balb.idr	Intergenic	Intergenic	-27356.0	NM_008699	18089.0	Mm.56994	NM_008699	ENSMUSG00000044220	Nkx2-3	Nkx-2.3|Nkx2.3|tinman	NK2 homeobox 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-21878073-2	chr3	21877573	21878573	+	542.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-198579.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-116593416-2	chr11	116592933	116593933	+	542.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009591)	promoter-TSS (NM_009591)	-254.0	NR_033223	11298.0	Mm.42233	NM_009591	ENSMUSG00000020804	Aanat	AA-NAT|Nat-2|Nat4|Snat	arylalkylamine N-acetyltransferase	protein-coding	0.0	0.0	1.5	0.0	4.5	0.0
Merged-chr9-61590116-1	chr9	61589616	61590616	+	542.0	f0_balb.idr	Intergenic	Intergenic	217750.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25534473-1	chr8	25533973	25534973	+	542.0	f1_c57bl6.idr	intron (NM_001079909, intron 2 of 16)	intron (NM_001079909, intron 2 of 16)	15714.0	NM_001079908	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	0.0	1.0	3.0	0.0	0.0	0.5
Merged-chr11-9566395-1	chr11	9565895	9566895	+	542.0	f1_balb.idr	intron (NM_178259, intron 49 of 61)	intron (NM_178259, intron 49 of 61)	374453.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	0.0	0.0	0.5	4.5	1.5	0.0
Merged-chr2-181591547-1	chr2	181591047	181592047	+	542.0	f1_balb.idr	intron (NM_001164597, intron 1 of 16)	intron (NM_001164597, intron 1 of 16)	914.0	NM_001164597	269401.0	Mm.386888	NM_001164597	ENSMUSG00000000823	Zfp512b	Gm632|Znf512b	zinc finger protein 512B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-46770863-1	chr7	46770363	46771363	+	542.0	f0_balb.idr	intron (NM_001005247, intron 16 of 22)	intron (NM_001005247, intron 16 of 22)	19030.0	NM_001357491	20209.0	Mm.200941	NM_011314	ENSMUSG00000057465	Saa2	AW111173|Saa-2|Saa1	serum amyloid A 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-113758149-1	chr7	113757649	113758649	+	542.0	f1_balb.idr	Intergenic	Intergenic	-7849.0	NM_145584	233744.0	Mm.334160	NM_145584	ENSMUSG00000038156	Spon1	AI666765|AW455831|BC020531|D330035F22Rik|FSP	spondin 1, (f-spondin) extracellular matrix protein	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr1-84623040-1	chr1	84622540	84623540	+	542.0	f1_balb.idr	intron (NM_152915, intron 1 of 12)	intron (NM_152915, intron 1 of 12)	-72799.0	NR_039588	100628595.0		NR_039588	ENSMUSG00000093254	Mir5126	mir-5126|mmu-mir-5126|mu-mir-5126	microRNA 5126	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-20032142-1	chr4	20031642	20032642	+	542.0	f1_c57bl6.idr	Intergenic	Intergenic	-9910.0	NM_010281	14590.0	Mm.20461	NM_010281	ENSMUSG00000073987	Ggh	gamma-GH	gamma-glutamyl hydrolase	protein-coding	0.0	0.0	2.0	0.0	0.0	1.5
Merged-chr2-116945124-1	chr2	116944624	116945624	+	542.0	f1_balb.idr	Intergenic	Intergenic	44972.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.0	18.0	4.0	8.5	9.0	5.5
Merged-chr12-40137108-2	chr12	40136608	40137608	+	542.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-2880.0	NM_001146196	20259.0	Mm.2416	NM_009132	ENSMUSG00000002565	Scin	AW545522|adseverin	scinderin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30395904-2	chr7	30395404	30396404	+	542.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H1|LTR|ERVL-MaLR	-17884.0	NM_011662	22177.0	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-17265919-1	chr13	17265419	17266419	+	542.0	f1_c57bl6.idr	intron (NM_138654, intron 11 of 13)	L1VL4|LINE|L1	428846.0	NM_138654	192136.0	Mm.364180	NM_138654	ENSMUSG00000055137	Sugct	5033411D12Rik|D17907	succinyl-CoA glutarate-CoA transferase	protein-coding	0.0	0.0	0.0	0.0	1.0	0.0
Merged-chr2-166501066-1	chr2	166500566	166501566	+	542.0	f1_balb.idr	Intergenic	B2_Mm2|SINE|B2	53615.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-29542394-1	chr15	29541894	29542894	+	542.0	f1_balb.idr	Intergenic	L1_Mur2|LINE|L1	171010.0	NR_039542	100628607.0		NR_039542	ENSMUSG00000092639	Mir3964	mmu-mir-3964|mu-mir-3964	microRNA 3964	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-36658616-2	chr16	36658116	36659116	+	542.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	L1MD2|LINE|L1	7461.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135419537-1	chr4	135419037	135420037	+	542.0	f1_c57bl6.idr	intron (NM_022980, intron 3 of 4)	MTC|LTR|ERVL-MaLR	-2904.0	NR_030481	735285.0		NR_030481	ENSMUSG00000076123	Mir700	Mirn700|mir-700|mmu-mir-700	microRNA 700	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-165529032-1	chr2	165528532	165529532	+	542.0	f1_balb.idr	Intergenic	Intergenic	25135.0	NM_130451	170441.0	Mm.34147	NM_130451	ENSMUSG00000027661	Slc2a10	AA450473|Glut10	solute carrier family 2 (facilitated glucose transporter), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-115665216-1	chr6	115664716	115665716	+	542.0	f1_balb.idr	intron (NM_029780, intron 1 of 16)	intron (NM_029780, intron 1 of 16)	10672.0	NM_001356334	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-5790963-1	chr10	5790463	5791463	+	542.0	f1_c57bl6.idr	Intergenic	Intergenic	14502.0	NM_025995	67141.0	Mm.197520	NM_025995	ENSMUSG00000019773	Fbxo5	2510044I10Rik|C85305|Emi1|Fbxo31	F-box protein 5	protein-coding	0.0	0.0	0.0	1.5	1.5	1.0
Merged-chr11-103141746-1	chr11	103141246	103142246	+	542.0	f1_balb.idr	Intergenic	Intergenic	8387.0	NM_027658	71059.0	Mm.273871	NM_027658	ENSMUSG00000043372	Hexim2	4933402L21Rik	hexamethylene bis-acetamide inducible 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-87333829-1	chr5	87333329	87334329	+	542.0	f1_balb.idr	intron (NM_028094, intron 1 of 5)	intron (NM_028094, intron 1 of 5)	3366.0	NM_028094	72094.0	Mm.482739	NM_028094	ENSMUSG00000035780	Ugt2a3	2010321J07Rik	UDP glucuronosyltransferase 2 family, polypeptide A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-135152371-1	chr4	135151871	135152871	+	542.0	f1_c57bl6.idr	intron (NM_019732, intron 1 of 5)	CpG	31726.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-101925476-1	chr5	101924976	101925976	+	542.0	f1_balb.idr	intron (NM_172882, intron 18 of 66)	intron (NM_172882, intron 18 of 66)	144445.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.0	0.0	0.0	12.0	0.0	0.5
Merged-chr9-119979931-1	chr9	119979431	119980431	+	542.0	f1_c57bl6.idr	intron (NM_153287, intron 1 of 4)	intron (NM_153287, intron 1 of 4)	3092.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87653279-1	chr1	87652779	87653779	+	542.0	f0_balb.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	32967.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65199511-1	chr9	65199011	65200011	+	542.0	f1_balb.idr	Intergenic	(CAAA)n|Simple_repeat|Simple_repeat	-15179.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-101660672-1	chr4	101660172	101661172	+	542.0	f1_c57bl6.idr	Intergenic	Intergenic	12889.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	13.0	37.5	9.0	11.5	5.5	7.5
Merged-chr12-43186775-1	chr12	43186275	43187275	+	542.0	f1_balb.idr	Intergenic	L1_Mus4|LINE|L1	-152558.0	NR_148724	102636207.0		NR_148724		Gm33340	Gm40882	predicted gene, 33340	ncRNA	0.0	4.5	0.0	0.0	0.0	0.0
Merged-chr7-141622615-1	chr7	141622115	141623115	+	542.0	f1_c57bl6.idr	intron (NM_001357068, intron 14 of 21)	B1_Mus1|SINE|Alu	1914.0	NR_106030	102466798.0		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-6354731-1	chr7	6354231	6355231	+	542.0	f1_c57bl6.idr	Intergenic	Intergenic	-8577.0	NM_001025163	330463.0	Mm.136456	NM_177888	ENSMUSG00000055150	Zfp78	A330079D15|KRAB12|Zfp77	zinc finger protein 78	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-72154709-1	chr6	72154209	72155209	+	542.0	f1_balb.idr	TTS (NM_011375)	TTS (NM_011375)	-31512.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-90584162-1	chr17	90583662	90584662	+	542.0	f1_c57bl6.idr	intron (NM_001346957, intron 12 of 18)	intron (NM_001346957, intron 12 of 18)	-128282.0	NM_001346959	18189.0	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.0	0.0	2.5	0.0	0.5	0.0
Merged-chr13-14333764-1	chr13	14333264	14334264	+	542.0	f1_balb.idr	intron (NM_001081348, intron 7 of 28)	Lx2|LINE|L1	189462.0	NM_001081348	94253.0	Mm.125298	NM_153130	ENSMUSG00000021301	Hecw1	9330116H24Rik|AV273951|E130207I19Rik|Nedl1	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-34239646-1	chr13	34239146	34240146	+	542.0	f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	76682.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	1.5	0.0	0.0	0.5	7.0	5.0
Merged-chr3-41586642-1	chr3	41586142	41587142	+	542.0	f1_c57bl6.idr	intron (NM_001130184, intron 2 of 10)	intron (NM_001130184, intron 2 of 10)	21762.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	13.5	11.5	27.5	14.0	21.0	20.5
Merged-chr7-111663292-1	chr7	111662792	111663792	+	542.0	f0_balb.idr	intron (NM_001360903, intron 1 of 10)	intron (NM_001360903, intron 1 of 10)	116685.0	NM_001360903	233733.0	Mm.323322	NM_173739	ENSMUSG00000038296	Galnt18	2900011G21Rik|BC024988|Galntl4|galNAc-T18|mpp-GalNAc-T18(O18)	polypeptide N-acetylgalactosaminyltransferase 18	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-21573042-1	chr11	21572542	21573542	+	542.0	f1_c57bl6.idr	intron (NM_145425, intron 1 of 17)	MTC|LTR|ERVL-MaLR	761.0	NM_145425	216560.0	Mm.138090	NM_145425	ENSMUSG00000020319	Wdpcp	AV249152	WD repeat containing planar cell polarity effector	protein-coding	9.5	7.5	7.5	0.5	3.5	8.5
Merged-chr6-88824846-1	chr6	88824346	88825346	+	542.0	f1_c57bl6.idr	intron (NM_001166249, intron 7 of 7)	intron (NM_001166249, intron 7 of 7)	17089.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-47734934-1	chr18	47734434	47735434	+	542.0	f0_balb.idr	Intergenic	Intergenic	54599.0	NR_152200	100042982.0	Mm.125235	NR_152200		Gm4146	Gm45939	predicted gene 4146	ncRNA	0.5	6.0	3.0	0.5	3.5	1.0
Merged-chr12-79636233-1	chr12	79635733	79636733	+	542.0	f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	288500.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-171871909-1	chr1	171871409	171872409	+	542.0	f0_balb.idr	intron (NM_001289470, intron 3 of 8)	MER63C|DNA|hAT-Blackjack	32212.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	15.0	14.5	23.5	6.0	13.0	16.5
Merged-chr2-16187283-1	chr2	16186783	16187783	+	542.0	f1_balb.idr	intron (NM_001310455, intron 35 of 38)	intron (NM_001310455, intron 35 of 38)	-169021.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-38846556-1	chr2	38846056	38847056	+	542.0	f1_balb.idr	intron (NM_010264, intron 3 of 10)	intron (NM_010264, intron 3 of 10)	-6179.0	NR_029568	387176.0		NR_029568	ENSMUSG00000065423	Mir181a-2	Mirn181|Mirn181a|Mirn181a-2|miR-181|mir-181a|mir-181a-2	microRNA 181a-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-71299081-1	chr8	71298581	71299581	+	542.0	f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	26367.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	0.0	2.5	7.5	1.0	6.5	4.0
Merged-chr7-44899284-1	chr7	44898784	44899784	+	542.0	f1_c57bl6.idr	intron (NM_027376, intron 9 of 10)	intron (NM_027376, intron 9 of 10)	3205.0	NM_027376	70300.0	Mm.276298	NM_027376	ENSMUSG00000011658	Fuz	2600013E07Rik|b2b1273Clo	fuzzy planar cell polarity protein	protein-coding	0.0	4.5	0.0	0.0	0.0	0.0
Merged-chr5-38516437-1	chr5	38515937	38516937	+	542.0	f0_c57.idr	Intergenic	Intergenic	-14285.0	NM_145559	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	1.0	0.0	0.0	2.0	0.0	1.0
Merged-chr18-69436405-1	chr18	69435905	69436905	+	542.0	f1_c57bl6.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	90245.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-27657962-1	chr7	27657462	27658462	+	542.0	f1_c57bl6.idr	exon (NM_001290528, exon 9 of 10)	exon (NM_001290528, exon 9 of 10)	4038.0	NM_028417	73032.0	Mm.44095	NM_028417	ENSMUSG00000007944	Ttc9b	2900074C18Rik	tetratricopeptide repeat domain 9B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120323709-1	chr8	120323209	120324209	+	542.0	f1_c57bl6.idr	Intergenic	Intergenic	-95479.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30941962-1	chr14	30941462	30942462	+	542.0	f1_c57bl6.idr	exon (NM_001306078, exon 4 of 22)	exon (NM_001306078, exon 4 of 22)	1327.0	NM_008406	16424.0	Mm.3227	NM_008406	ENSMUSG00000006529	Itih1	ITI-HC1|Intin1|Itih-1	inter-alpha trypsin inhibitor, heavy chain 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118131145-1	chr14	118130645	118131645	+	542.0	f1_balb.idr	intron (NM_029578, intron 1 of 11)	intron (NM_029578, intron 1 of 11)	1620.0	NM_029578	76355.0	Mm.251537	NM_029578	ENSMUSG00000022130	Tgds	2610017J16Rik|2610025M23Rik|AI648925	TDP-glucose 4,6-dehydratase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-15913930-1	chr7	15913430	15914430	+	542.0	f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	8441.0	NM_009156	20364.0	Mm.42829	NM_009156	ENSMUSG00000041571	Selenow	Sepw1|selW	selenoprotein W	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-169672973-1	chr2	169672473	169673473	+	542.0	f1_c57bl6.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	39327.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-44382394-1	chr18	44381894	44382894	+	542.0	f1_c57bl6.idr	intron (NM_027490, intron 1 of 10)	B3|SINE|B2	1894.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-39378626-1	chr6	39378126	39379126	+	542.0	f1_balb.idr	promoter-TSS (NM_028123)	promoter-TSS (NM_028123)	-919.0	NR_155077	72144.0	Mm.482167	NM_028123	ENSMUSG00000029924	Slc37a3	2610507O21Rik|AU044904	solute carrier family 37 (glycerol-3-phosphate transporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98569693-1	chr15	98569193	98570193	+	542.0	f1_balb.idr	non-coding (NR_028442, exon 2 of 2)	non-coding (NR_028442, exon 2 of 2)	-1311.0	NM_001201322	73863.0	Mm.66894	NM_001201322	ENSMUSG00000022993	4930415O20Rik	-	RIKEN cDNA 4930415O20 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-38963824-1	chr18	38963324	38964324	+	542.0	f1_balb.idr	intron (NM_001033789, intron 4 of 4)	MLT2B2|LTR|ERVL	-29321.0	NM_001361073	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	3.0	0.0	0.0	0.0	3.0	3.5
Merged-chr14-64640235-2	chr14	64639735	64640735	+	542.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12296.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	9.5	4.0	4.0	3.5	1.5	1.5
Merged-chr18-19512710-1	chr18	19512210	19513210	+	542.0	f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	489387.0	NM_007882	13507.0	Mm.89935	NM_007882	ENSMUSG00000059898	Dsc3	5430426I24Rik	desmocollin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-16424924-1	chr5	16424424	16425424	+	542.0	f0_balb.idr	Intergenic	RMER13B|LTR|ERVK	-128571.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126549684-1	chr7	126549184	126550184	+	542.0	f1_balb.idr	intron (NM_146200, intron 16 of 20)	RMER17A2|LTR|ERVK	16682.0	NM_146200	56347.0	Mm.22776	NM_146200	ENSMUSG00000030738	Eif3c	110kDa|3230401O13Rik|Eif3s8|NIPIL(A3)|NipilA3|Xs|Xsl	eukaryotic translation initiation factor 3, subunit C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-122381226-1	chr5	122380726	122381726	+	542.0	f1_c57bl6.idr	exon (NM_024216, exon 5 of 8)	exon (NM_024216, exon 5 of 8)	8718.0	NM_024216	68080.0	Mm.266328	NM_024216	ENSMUSG00000029464	Gpn3	A930018B01Rik|Atpbd1c|D5Ertd708e	GPN-loop GTPase 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-20771360-1	chr10	20770860	20771860	+	542.0	f1_balb.idr	Intergenic	MLT2F|LTR|ERVL	-46282.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	246.0	631.0	333.5	176.5	466.0	261.0
Merged-chr14-114947977-1	chr14	114947477	114948477	+	542.0	f1_c57bl6.idr	Intergenic	Intergenic	-2029.0	NR_126548	74982.0		NR_126548	ENSMUSG00000115372	1700100I10Rik	1700085D13Rik|4930481K08Rik	RIKEN cDNA 1700100I10 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-52941988-1	chr18	52941488	52942488	+	542.0	f1_c57bl6.idr	Intergenic	Intergenic	173844.0	NM_001199154	67847.0	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106820566-1	chr1	106820066	106821066	+	542.0	f1_c57bl6.idr	Intergenic	Intergenic	-23841.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	0.0	4.5	0.0	0.0	0.0	0.0
Merged-chr18-36016589-1	chr18	36016089	36017089	+	542.0	f1_balb.idr	Intergenic	Intergenic	51759.0	NR_110349	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-68032379-1	chr18	68031879	68032879	+	542.0	f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	99206.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-25705093-1	chr5	25704593	25705593	+	542.0	f1_balb.idr	intron (NM_020570, intron 1 of 2)	intron (NM_020570, intron 1 of 2)	704.0	NM_020570	57434.0	Mm.143767	NM_020570	ENSMUSG00000028933	Xrcc2	4921524O04Rik|8030409M04Rik|RAD51|RecA	X-ray repair complementing defective repair in Chinese hamster cells 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-145859112-1	chr2	145858612	145859612	+	542.0	f1_c57bl6.idr	intron (NM_028724, intron 8 of 12)	intron (NM_028724, intron 8 of 12)	-44129.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	21.5	31.5	30.5	15.5	30.5	19.0
Merged-chr17-56203200-1	chr17	56202700	56203700	+	542.0	f1_balb.idr	intron (NM_001360284, intron 8 of 20)	intron (NM_001360284, intron 8 of 20)	15285.0	NM_001360284	224897.0	Mm.205535	NM_172624	ENSMUSG00000001229	Dpp9	6430584G11Rik|A330078I11|DPP IX|DPRP2	dipeptidylpeptidase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-43699062-1	chr16	43698562	43699562	+	542.0	f1_balb.idr	Intergenic	Intergenic	-34878.0	NM_001146325	100043314.0	Mm.390896	NM_001146325	ENSMUSG00000071552	Tigit	Vstm3	T cell immunoreceptor with Ig and ITIM domains	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84815152-1	chr8	84814652	84815652	+	542.0	f1_balb.idr	TTS (NM_201227)	TTS (NM_201227)	7671.0	NM_201227	23863.0	Mm.304252	NM_201227	ENSMUSG00000053226	Dand5	Cerl-2|Cerl2|Cerr2|Dte|GREM3|coco	DAN domain family member 5, BMP antagonist	protein-coding	1.0	0.0	3.0	0.0	3.5	0.0
Merged-chr3-65580265-2	chr3	65579765	65580765	+	542.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50851.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	4.0	1.0	0.5	0.0	0.0	0.0
Merged-chr3-88483227-1	chr3	88482727	88483727	+	542.0	f1_c57bl6.idr	TTS (NM_019390)	TTS (NM_019390)	10085.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-69629906-1	chr18	69629406	69630406	+	542.0	f0_balb.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	283746.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-98797656-1	chr11	98797156	98798156	+	542.0	f1_balb.idr	promoter-TSS (NM_001361934)	promoter-TSS (NM_001361934)	-998.0	NM_001361933	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-6983884-1	chr10	6983384	6984384	+	542.0	f0_balb.idr	intron (NM_001039652, intron 4 of 5)	MTE2a|LTR|ERVL-MaLR	-3419.0	NM_001170801	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr8-95840697-1	chr8	95840197	95841197	+	542.0	f1_c57bl6.idr	intron (NM_172758, intron 10 of 11)	intron (NM_172758, intron 10 of 11)	12794.0	NM_172758	234595.0	Mm.29267	NM_172758	ENSMUSG00000036534	Slc38a7	D430050E18	solute carrier family 38, member 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-55131272-1	chr11	55130772	55131772	+	542.0	f1_balb.idr	intron (NM_172258, intron 8 of 10)	intron (NM_172258, intron 8 of 10)	20434.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-83916213-2	chr14	83915713	83916713	+	542.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	159077.0	NR_153783	102635012.0	Mm.399509	NR_153783	ENSMUSG00000115043	Gm32455	-	predicted gene, 32455	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-34936183-1	chr17	34935683	34936683	+	542.0	f1_c57bl6.idr	3' UTR (NM_010893, exon 6 of 6)	3' UTR (NM_010893, exon 6 of 6)	4930.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-49639078-2	chr18	49638578	49639578	+	542.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	115789.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-67464139-1	chr18	67463639	67464639	+	542.0	f1_balb.idr	promoter-TSS (NM_144867)	promoter-TSS (NM_144867)	-710.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-44508498-2	chr9	44507998	44508998	+	542.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357490, intron 7 of 7)	intron (NM_001357490, intron 7 of 7)	9362.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-75130080-1	chr14	75129580	75130580	+	542.0	f1_c57bl6.idr	intron (NM_027581, intron 1 of 9)	AT_rich|Low_complexity|Low_complexity	803.0	NM_027581	70859.0	Mm.320289	NM_027581	ENSMUSG00000021997	Lrrc63	4921509B22Rik	leucine rich repeat containing 63	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-79688590-2	chr5	79688090	79689090	+	542.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	-1331981.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.0	6.5	5.5	0.0	1.0	0.0
Merged-chr2-43200742-1	chr2	43200242	43201242	+	542.0	f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-354583.0	NM_001289593	70789.0	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-80087051-1	chr2	80086551	80087551	+	542.0	f1_balb.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	41920.0	NM_016744	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	10.0	0.0	0.0	1.0	6.5	2.5
Merged-chr8-95020503-1	chr8	95020003	95021003	+	542.0	f1_c57bl6.idr	intron (NM_173036, intron 1 of 11)	intron (NM_173036, intron 1 of 11)	2811.0	NM_173036	54672.0	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118353067-1	chr11	118352567	118353567	+	542.0	f1_balb.idr	intron (NM_011594, intron 1 of 4)	intron (NM_011594, intron 1 of 4)	2344.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34070864-1	chr11	34070364	34071364	+	542.0	f1_c57bl6.idr	intron (NM_010696, intron 6 of 20)	intron (NM_010696, intron 6 of 20)	23936.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	9.0	16.0	18.5	9.0	29.5	16.0
Merged-chr6-82125403-1	chr6	82124903	82125903	+	542.0	f0_balb.idr	Intergenic	Intergenic	83775.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	1.0	0.0	0.0	0.0	1.5	2.0
Merged-chr4-10896349-1	chr4	10895849	10896849	+	542.0	f1_balb.idr	intron (NM_026005, intron 5 of 5)	intron (NM_026005, intron 5 of 5)	21851.0	NM_026005	67157.0	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	1.0	4.0	0.0	2.5	0.0	2.5
Merged-chr5-150597767-2	chr5	150597267	150598267	+	542.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3242.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-56759950-1	chr19	56759450	56760450	+	542.0	f1_balb.idr	Intergenic	Intergenic	37578.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-51111426-1	chr17	51110926	51111926	+	542.0	f0_balb.idr	intron (NM_028162, intron 2 of 21)	intron (NM_028162, intron 2 of 21)	47952.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-5215442-1	chr17	5214942	5215942	+	542.0	f1_balb.idr	intron (NM_001085355, intron 4 of 19)	MLT1E1A|LTR|ERVL-MaLR	203325.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-51647916-1	chr13	51647416	51648416	+	542.0	f1_balb.idr	intron (NM_025415, intron 1 of 2)	intron (NM_025415, intron 1 of 2)	2684.0	NM_025415	66197.0	Mm.222228	NM_025415	ENSMUSG00000062248	Cks2	1110038L14Rik|CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-146203891-1	chr3	146203391	146204391	+	542.0	f1_c57bl6.idr	Intergenic	Intergenic	-17070.0	NM_022983	65086.0	Mm.155520	NM_022983	ENSMUSG00000036832	Lpar3	Edg7|lpA3	lysophosphatidic acid receptor 3	protein-coding	0.0	0.0	2.5	2.5	0.0	0.0
Merged-chr5-123976007-2	chr5	123975507	123976507	+	542.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145070, intron 1 of 31)	intron (NM_145070, intron 1 of 31)	2379.0	NM_145070	29816.0	Mm.149954	NM_145070	ENSMUSG00000000915	Hip1r	AA410023|mKIAA0655	huntingtin interacting protein 1 related	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-128793790-1	chr4	128793290	128794290	+	542.0	f1_balb.idr	intron (NM_001081098, intron 2 of 8)	intron (NM_001081098, intron 2 of 8)	12322.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-35337350-1	chr11	35336850	35337850	+	542.0	f1_c57bl6.idr	intron (NM_011412, intron 4 of 35)	intron (NM_011412, intron 4 of 35)	215894.0	NM_011412	20564.0	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit guidance ligand 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-65128291-1	chr9	65127791	65128791	+	542.0	f1_c57bl6.idr	intron (NM_001290315, intron 10 of 19)	intron (NM_001290315, intron 10 of 19)	-12863.0	NM_008988	19289.0	Mm.41529	NM_008988	ENSMUSG00000032394	Igdcc3	2810401C09Rik|AI851425|Punc|WI-14920	immunoglobulin superfamily, DCC subclass, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-115711839-1	chr11	115711339	115712339	+	542.0	f1_c57bl6.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-3242.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	6.0	6.0	2.0	9.0	10.0	3.0
Merged-chr6-124807108-1	chr6	124806608	124807608	+	542.0	f1_balb.idr	Intergenic	B1_Mus2|SINE|Alu	-1553.0	NM_001306051	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	0.0	15.0	7.5	0.0	14.5	4.5
Merged-chr6-88040620-1	chr6	88040120	88041120	+	542.0	f1_c57bl6.idr	intron (NM_001293652, intron 1 of 7)	B1_Mur2|SINE|Alu	4397.0	NM_001293653	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-34083022-1	chr11	34082522	34083522	+	542.0	f1_c57bl6.idr	intron (NM_010696, intron 16 of 20)	MTD|LTR|ERVL-MaLR	15532.0	NR_155520	76874.0	Mm.437529	NR_155520		4930469K13Rik	-	RIKEN cDNA 4930469K13 gene	ncRNA	3.5	4.5	0.0	3.5	2.0	1.5
Merged-chr2-166740418-1	chr2	166739918	166740918	+	542.0	f1_c57bl6.idr	Intergenic	Intergenic	-26586.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-110842616-1	chr7	110842116	110843116	+	542.0	f1_balb.idr	intron (NM_025999, intron 1 of 5)	B4|SINE|B4	1765.0	NM_025999	67150.0	Mm.96867	NM_025999	ENSMUSG00000030788	Rnf141	2610110L04Rik|AA792898|AU022812|ZFP36|ZNF230	ring finger protein 141	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-84911692-1	chr8	84911192	84912192	+	542.0	f1_balb.idr	TTS (NM_019945)	TTS (NM_019945)	-1643.0	NR_103491	100503676.0	Mm.437155	NR_103491	ENSMUSG00000003812	Gm38426	-	predicted gene, 38426	ncRNA	0.0	4.5	1.5	10.5	7.5	4.5
Merged-chr11-64835304-1	chr11	64834804	64835804	+	542.0	f0_c57.idr	Intergenic	Intergenic	-143731.0	NM_023479	68626.0	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	3.0	23.5	19.5	2.0	21.5	6.0
Merged-chr10-109999264-1	chr10	109998764	109999764	+	542.0	f1_c57bl6.idr	intron (NM_001081035, intron 1 of 38)	intron (NM_001081035, intron 1 of 38)	955.0	NM_001081035	260315.0	Mm.225050	NM_177797	ENSMUSG00000020181	Nav3	4732483H20Rik|9630020C08Rik|POMFIL1|Pomfil1p|mKIAA0938|unc53H3	neuron navigator 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-100692479-1	chr11	100691979	100692979	+	542.0	f0_balb.idr	Intergenic	Intergenic	11792.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-107492676-1	chr1	107492176	107493176	+	542.0	f0_balb.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-18747.0	NM_001174170	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	11.0	1.5	1.0	0.0	1.5	0.0
Merged-chr5-63825586-2	chr5	63825086	63826086	+	542.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	B4A|SINE|B4	13091.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	0.0	2.0	7.0	0.0	0.0	2.0
Merged-chr18-77936574-1	chr18	77936074	77937074	+	542.0	f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	-1893.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34520114-2	chr5	34519614	34520614	+	541.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5670.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-4191636-2	chr5	4191136	4192136	+	541.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042670)	promoter-TSS (NM_001042670)	-731.0	NM_001042670	208595.0	Mm.129815	NM_001042670	ENSMUSG00000053178	Mterf1b	Gm9897	mitochondrial transcription termination factor 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-30785087-2	chr16	30784587	30785587	+	541.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	185364.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0.5	0.0	1.0	0.0	1.0	2.0
Merged-chr15-33184521-2	chr15	33184021	33185021	+	541.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018755, intron 2 of 8)	intron (NM_018755, intron 2 of 8)	101392.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-75884835-2	chr15	75884335	75885335	+	541.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282443, intron 11 of 13)	intron (NM_001282443, intron 11 of 13)	3888.0	NM_001282443	223645.0		NM_001282443	ENSMUSG00000098678	Mroh6	Gm19570	maestro heat-like repeat family member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-145225746-2	chr4	145225246	145226246	+	541.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 3 of 9)	intron (NM_011610, intron 3 of 9)	21124.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141134557-2	chr4	141134105	141135105	+	541.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277195, intron 1 of 3)	intron (NM_001277195, intron 1 of 3)	5191.0	NR_102344	213491.0	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-5115792-2	chr15	5115292	5116292	+	541.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026069)	promoter-TSS (NM_026069)	-821.0	NM_026069	67281.0	Mm.10474	NM_026069	ENSMUSG00000041841	Rpl37	3110005M08Rik	ribosomal protein L37	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-127253389-2	chr7	127252889	127253889	+	541.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360916, intron 2 of 2)	intron (NM_001360916, intron 2 of 2)	7278.0	NM_023203	66422.0	Mm.29898	NM_023203	ENSMUSG00000042462	Dctpp1	2410015N17Rik|AI854235|RS21-C6	dCTP pyrophosphatase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113324076-2	chr6	113323576	113324576	+	541.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001282126, exon 13 of 13)	exon (NM_001282126, exon 13 of 13)	-2900.0	NR_149720	18294.0	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-56171531-2	chr13	56171031	56172031	+	541.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7354.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	3.0	9.5	0.0	4.0	7.0	1.0
Merged-chr10-117723482-2	chr10	117722982	117723982	+	541.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-12724.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-27476670-2	chr2	27476170	27477170	+	541.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113574)	promoter-TSS (NM_001113574)	-997.0	NM_001113574	67382.0	Mm.28721	NM_023336	ENSMUSG00000026918	Brd3	2410084F24Rik|AW060456|Fsrg2|ORFX|RINGL3	bromodomain containing 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-163923580-2	chr1	163923080	163924080	+	541.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14-int|LTR|ERV1	-5520.0	NM_001286002	240880.0	Mm.389213	NM_028776	ENSMUSG00000026584	Scyl3	1200016D23Rik|6030457O16|AW214499|Pace1	SCY1-like 3 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-11139571-2	chr16	11139071	11140071	+	541.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_027502, intron 21 of 22)	intron (NR_027502, intron 21 of 22)	-5039.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-102437679-2	chr7	102437202	102438202	+	541.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009287)	TTS (NM_009287)	-3993.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	0.0	0.0	0.0	1.5	0.0	0.0
Merged-chr16-13863176-2	chr16	13862676	13863676	+	541.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039533, intron 8 of 22)	RLTR53_Mm|LTR|ERVK	39969.0	NM_001039533	94184.0	Mm.171484	NM_053181	ENSMUSG00000022680	Pdxdc1	2210010A19Rik|AA415817|Kiaa0251-hp	pyridoxal-dependent decarboxylase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-30599740-2	chr2	30599240	30600240	+	541.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030137, intron 1 of 1)	intron (NM_030137, intron 1 of 1)	4696.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27693349-2	chr3	27692849	27693849	+	541.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 1 of 26)	intron (NM_001356953, intron 1 of 26)	17103.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-12736527-2	chr18	12736027	12737027	+	541.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028341, intron 13 of 13)	intron (NM_028341, intron 13 of 13)	-4828.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-96333073-2	chr3	96332573	96333573	+	541.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12214.0	NR_152105	100504145.0	Mm.100443	NR_152105	ENSMUSG00000097851	Platr30	Gm17580	pluripotency associated transcript 30	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54977886-2	chr11	54977386	54978386	+	541.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14946.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102192298-1	chr11	102191798	102192798	+	541.0	f1_balb.idr	intron (NM_175935, intron 2 of 5)	intron (NM_175935, intron 2 of 5)	2599.0	NM_175935	68401.0	Mm.22385	NM_175935	ENSMUSG00000034793	G6pc3	0710001K01Rik|AU019276|AU045429|AV128920|AW545836|UGRP	glucose 6 phosphatase, catalytic, 3	protein-coding	0.0	4.0	3.0	0.0	0.5	1.0
Merged-chr7-145301069-1	chr7	145300569	145301569	+	541.0	f1_c57bl6.idr	intron (NM_145379, intron 1 of 2)	intron (NM_145379, intron 1 of 2)	160.0	NM_145379	211577.0	Mm.215151	NM_145379	ENSMUSG00000031070	Mrgprf	BC019711|Mgrc|MrgF	MAS-related GPR, member F	protein-coding	0.0	3.0	2.5	0.0	3.0	0.0
Merged-chr18-6244352-1	chr18	6243852	6244852	+	541.0	f0_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2828.0	NM_008448	16573.0	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139391022-1	chr5	139390522	139391522	+	541.0	f1_balb.idr	intron (NM_001038703, intron 1 of 1)	intron (NM_001038703, intron 1 of 1)	1118.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-134235335-1	chr6	134234835	134235835	+	541.0	f1_c57bl6.idr	intron (NM_001303102, intron 5 of 8)	intron (NM_001303102, intron 5 of 8)	-160994.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-124695563-1	chr4	124695063	124696063	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	-2009.0	NM_026031	67205.0	Mm.259121	NM_026031	ENSMUSG00000028907	Utp11	2700082D03Rik|CGI-94|Cgi94|Utp11l	UTP11 small subunit processome component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-119090041-1	chr3	119089541	119090541	+	541.0	f1_balb.idr	intron (NM_170778, intron 14 of 22)	intron (NM_170778, intron 14 of 22)	527861.0	NM_170778	99586.0	Mm.27907	NM_170778	ENSMUSG00000033308	Dpyd	AI315208|DHPDHase|DPD|E330028L06Rik	dihydropyrimidine dehydrogenase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-25690488-1	chr7	25689988	25690988	+	541.0	f1_c57bl6.idr	intron (NM_011577, intron 1 of 6)	(TGAA)n|Simple_repeat|Simple_repeat	3486.0	NM_011577	21803.0	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106321585-1	chr9	106321085	106322085	+	541.0	f1_c57bl6.idr	intron (NM_027354, intron 9 of 10)	intron (NM_027354, intron 9 of 10)	40524.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	9.0	10.5	10.0	10.0	7.0	3.5
Merged-chr6-54932714-1	chr6	54932214	54933214	+	541.0	f1_balb.idr	intron (NM_001171007, intron 9 of 11)	MTEa|LTR|ERVL-MaLR	38947.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-35446297-1	chr2	35445797	35446797	+	541.0	f1_balb.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	15152.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-43539212-1	chr10	43538712	43539712	+	541.0	f1_balb.idr	intron (NM_026411, intron 1 of 3)	Lx8|LINE|L1	1806.0	NM_026411	67851.0	Mm.209953	NM_026411	ENSMUSG00000019797	1700021F05Rik	-	RIKEN cDNA 1700021F05 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40804791-1	chr9	40804291	40805291	+	541.0	f1_c57bl6.idr	intron (NM_031165, intron 8 of 8)	U14|snRNA|snRNA	3518.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	3.0	52.5	22.0	5.0	48.5	25.0
Merged-chr14-27352629-1	chr14	27352129	27353129	+	541.0	f0_balb.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	-8760.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	3.0	13.0	19.5	0.5	9.5	17.5
Merged-chr2-166710696-1	chr2	166710196	166711196	+	541.0	f1_balb.idr	intron (NM_177782, intron 1 of 39)	MIRb|SINE|MIR	3136.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-128066169-1	chr6	128065669	128066669	+	541.0	f1_balb.idr	intron (NM_001356301, intron 1 of 7)	intron (NM_001356301, intron 1 of 7)	77409.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	0.0	0.0	0.0	0.0	3.0	0.0
Merged-chr5-65766867-1	chr5	65766367	65767367	+	541.0	f1_c57bl6.idr	intron (NM_001024917, intron 1 of 19)	B2_Mm1a|SINE|B2	3346.0	NM_001024917	333789.0	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	5.0	2.0	2.5	5.0	0.0	2.0
Merged-chr6-22692925-1	chr6	22692425	22693425	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	-182577.0	NM_001311064	19283.0	Mm.41639	NM_011219	ENSMUSG00000068748	Ptprz1	AI850339|DSD-1-PG|PTPbeta|PTPzeta|Ptprz|Ptpz|R-PTP-zeta|RPTPz|Rptpbeta	protein tyrosine phosphatase, receptor type Z, polypeptide 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-67313849-1	chr5	67313349	67314349	+	541.0	f1_c57bl6.idr	intron (NM_178651, intron 1 of 17)	intron (NM_178651, intron 1 of 17)	6894.0	NM_001310629	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	3.0	4.5	4.0	0.5	4.0	3.5
Merged-chr2-75653323-1	chr2	75652823	75653823	+	541.0	f1_balb.idr	Intergenic	ID_B1|SINE|B4	-5936.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-89176339-1	chr15	89175839	89176839	+	541.0	f1_c57bl6.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	-2388.0	NM_001159521	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-4287139-1	chr19	4286639	4287639	+	541.0	f1_c57bl6.idr	exon (NM_130863, exon 22 of 22)	exon (NM_130863, exon 22 of 22)	-4002.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-105646110-1	chr12	105645610	105646610	+	541.0	f1_balb.idr	intron (NM_029654, intron 23 of 41)	intron (NM_029654, intron 23 of 41)	39131.0	NM_029654	76559.0	Mm.114362	NM_029654	ENSMUSG00000041341	Atg2b	2410024A21Rik|AI047755|AI503411|AW558123|C030004M05Rik|C630028L02Rik|mKIAA4067	autophagy related 2B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-112244344-1	chr5	112243844	112244844	+	541.0	f1_balb.idr	Intergenic	B1F|SINE|Alu	8174.0	NM_001312884	12959.0	Mm.40324	NM_021351	ENSMUSG00000066975	Cryba4	-	crystallin, beta A4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-34994836-1	chr6	34994336	34995336	+	541.0	f0_balb.idr	Intergenic	Intergenic	-16837.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-23315989-1	chr4	23315489	23316489	+	541.0	f1_balb.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	825441.0	NR_131335	105500046.0		NR_131335	ENSMUSG00000107859	Gm30731	Pnky|lnc-pou3f2	predicted gene, 30731	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29247744-1	chr7	29247244	29248244	+	541.0	f1_balb.idr	TTS (NM_001110201)	TTS (NM_001110201)	723.0	NM_028179	72275.0	Mm.441142	NM_028179	ENSMUSG00000030587	2200002D01Rik	2010005J02Rik|H2RSP|IMUP|IMUP-1|IMUP-2	RIKEN cDNA 2200002D01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-20525548-1	chr15	20525048	20526048	+	541.0	f1_balb.idr	Intergenic	L1_Mus2|LINE|L1	141202.0	NM_022816	64833.0	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding	0.0	0.0	3.5	0.0	0.0	1.5
Merged-chr7-125706928-1	chr7	125706428	125707428	+	541.0	f1_c57bl6.idr	promoter-TSS (NM_001081022)	promoter-TSS (NM_001081022)	760.0	NM_207239	233863.0	Mm.294173	NM_207239	ENSMUSG00000032777	Gtf3c1	-	general transcription factor III C 1	protein-coding	0.0	39.0	26.0	14.0	26.0	16.0
Merged-chr14-120284245-1	chr14	120283745	120284745	+	541.0	f1_c57bl6.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	8576.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45867186-1	chr7	45866686	45867686	+	541.0	f1_balb.idr	promoter-TSS (NM_008172)	promoter-TSS (NM_008172)	-505.0	NM_008172	14814.0	Mm.322594	NM_008172	ENSMUSG00000002771	Grin2d	GluN2D|NMDAR2D|NR2D	glutamate receptor, ionotropic, NMDA2D (epsilon 4)	protein-coding	0.0	0.0	0.0	1.0	0.0	0.0
Merged-chr5-30885429-1	chr5	30884929	30885929	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	-3423.0	NM_174849	231093.0	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-154332575-1	chr3	154332075	154333075	+	541.0	f0_balb.idr	intron (NR_040387, intron 2 of 2)	intron (NR_040387, intron 2 of 2)	1754.0	NR_040387	99686.0	Mm.38082	NR_040387	ENSMUSG00000093738	AI606473	-	expressed sequence AI606473	ncRNA	3.0	0.0	2.0	0.0	16.5	2.0
Merged-chr6-147040329-1	chr6	147039829	147040829	+	541.0	f1_balb.idr	Intergenic	L1VL2|LINE|L1	-2441.0	NM_145573	232536.0	Mm.46656	NM_145573	ENSMUSG00000040112	Mrps35	MDSO23|MRP-S28|MRPS28	mitochondrial ribosomal protein S35	protein-coding	1.0	4.0	4.0	0.0	5.5	0.0
Merged-chr3-51251924-1	chr3	51251424	51252424	+	541.0	f1_balb.idr	TTS (NM_009834)	TTS (NM_009834)	-24837.0	NR_073429	67746.0	Mm.441177	NR_073429	ENSMUSG00000087440	4930577N17Rik	-	RIKEN cDNA 4930577N17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-152922464-2	chr2	152921964	152922964	+	541.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081044, exon 12 of 12)	3' UTR (NM_001081044, exon 12 of 12)	10744.0	NM_010226	14239.0	Mm.205798	NM_010226	ENSMUSG00000074676	Foxs1	FREAC10|Fkh3|Fkhl18	forkhead box S1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-132302402-1	chr4	132301902	132302902	+	541.0	f1_c57bl6.idr	exon (NM_001081651, exon 2 of 2)	exon (NM_001081651, exon 2 of 2)	954.0	NM_001081651	242681.0	Mm.331927	NM_001081651	ENSMUSG00000089687	Rab42	9530096D07Rik|Rab42-ps	RAB42, member RAS oncogene family	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-128237268-1	chr10	128236768	128237768	+	541.0	f1_balb.idr	promoter-TSS (NM_011589)	promoter-TSS (NM_011589)	-798.0	NM_011589	21853.0	Mm.6458	NM_011589	ENSMUSG00000039994	Timeless	C77407|Debt69|tim	timeless circadian clock 1	protein-coding	5.0	6.0	4.5	0.0	21.0	3.0
Merged-chr3-147070773-1	chr3	147070273	147071273	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	218406.0	NM_001302957	70892.0	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	1.5	0.0	0.0	0.0	1.0	3.0
Merged-chr15-52729107-1	chr15	52728607	52729607	+	541.0	f1_c57bl6.idr	intron (NM_027212, intron 3 of 3)	RMER13A2|LTR|ERVK	16662.0	NM_027212	69790.0	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120095550-1	chr2	120095050	120096050	+	541.0	f1_c57bl6.idr	intron (NM_133838, intron 5 of 5)	intron (NM_133838, intron 5 of 5)	59025.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	6.0	5.0	4.0	0.0	8.5	2.0
Merged-chr8-105710795-1	chr8	105710295	105711295	+	541.0	f1_c57bl6.idr	TTS (NM_001357256)	TTS (NM_001357256)	2506.0	NM_027655	71046.0	Mm.280888	NM_027655	ENSMUSG00000013158	4933405L10Rik	-	RIKEN cDNA 4933405L10 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-87223558-2	chr18	87223058	87224058	+	541.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A1-int|LTR|ERVL-MaLR	511247.0	NM_001361145	12405.0	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-55976484-1	chr16	55975984	55976984	+	541.0	f1_c57bl6.idr	intron (NM_173026, intron 1 of 10)	intron (NM_173026, intron 1 of 10)	-1867.0	NR_027965	66391.0	Mm.472722	NM_133677	ENSMUSG00000102101	Zbtb11os1	2310061J03Rik	zinc finger and BTB domain containing 11, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-83231366-1	chr4	83230866	83231866	+	541.0	f1_balb.idr	intron (NM_027238, intron 18 of 19)	intron (NM_027238, intron 18 of 19)	92823.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	3.0	9.5	3.0	0.0	8.0	3.5
Merged-chr3-119785729-1	chr3	119785229	119786229	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	-2341.0	NM_019550	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-43131132-1	chr5	43130632	43131632	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	-102331.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0.0	9.0	7.0	2.0	4.0	8.5
Merged-chr6-100170921-1	chr6	100170421	100171421	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	116437.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166428203-1	chr2	166427703	166428703	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	-19248.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-76694600-1	chr16	76694100	76695100	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	84492.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-52316813-1	chr12	52316313	52317313	+	541.0	f1_balb.idr	Intergenic	Lx8|LINE|L1	163796.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	0.0	4.5	4.5	0.0	2.0	6.0
Merged-chr16-97537185-1	chr16	97536685	97537685	+	541.0	f1_balb.idr	intron (NM_013606, intron 1 of 13)	intron (NM_013606, intron 1 of 13)	1102.0	NM_013606	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	5.0	0.5	2.5	13.0	8.5	9.5
Merged-chr17-86336728-1	chr17	86336228	86337228	+	541.0	f1_balb.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	-49550.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	0.0	0.5	1.0	0.0	0.0	1.0
Merged-chr6-102171032-1	chr6	102170532	102171532	+	541.0	f1_balb.idr	intron (NM_008779, intron 19 of 21)	(CATAC)n|Simple_repeat|Simple_repeat	-95068.0	NR_131018	75893.0	Mm.2968	NR_131017	ENSMUSG00000107563	4930587E11Rik	4930523E13Rik|Gm44188	RIKEN cDNA 4930587E11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-103377956-1	chr5	103377456	103378456	+	541.0	f0_balb.idr	Intergenic	Intergenic	31358.0	NR_152117	75519.0	Mm.416851	NR_152117	ENSMUSG00000105426	1700021F02Rik	Gm42618	RIKEN cDNA 1700021F02 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-106296167-1	chr9	106295667	106296667	+	541.0	f1_c57bl6.idr	intron (NM_027354, intron 7 of 10)	intron (NM_027354, intron 7 of 10)	15106.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	42.5	75.5	79.0	37.0	58.5	24.0
Merged-chr7-25702593-1	chr7	25702093	25703093	+	541.0	f1_balb.idr	intron (NM_011577, intron 5 of 6)	B3|SINE|B2	15591.0	NM_011577	21803.0	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-40242392-1	chr9	40241892	40242892	+	541.0	f1_balb.idr	Intergenic	Intergenic	-26824.0	NM_001083917	235281.0	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-119805766-1	chr8	119805266	119806266	+	541.0	f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-27350.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-84620737-1	chr16	84620237	84621237	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	-59052.0	NR_040537	78023.0	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	7.5	27.5	15.0	10.0	17.0	18.0
Merged-chr7-43985053-1	chr7	43984553	43985553	+	541.0	f1_balb.idr	Intergenic	Intergenic	8992.0	NM_010116	13648.0	Mm.440884	NM_010116	ENSMUSG00000059042	Klk1b9	EGF-BP C|Egfbp-3|Egfbp3|KAL|Klk9|kallikrein|mGk-9	kallikrein 1-related peptidase b9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-79831965-1	chr10	79831465	79832465	+	541.0	f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	10944.0	NM_030218	78906.0	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-66815589-1	chr15	66815089	66816089	+	541.0	f0_balb.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	16240.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	3.0	11.5	7.5	9.0	8.0	13.5
Merged-chr6-113356006-1	chr6	113355506	113356506	+	541.0	f1_balb.idr	Intergenic	B1_Mus2|SINE|Alu	-12084.0	NM_133926	52163.0	Mm.277373	NM_133926	ENSMUSG00000030272	Camk1	AI505105|CaMKIalpha|D6Ertd263e	calcium/calmodulin-dependent protein kinase I	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-126751692-1	chr3	126751192	126752192	+	541.0	f1_c57bl6.idr	intron (NM_001025438, intron 4 of 18)	L2b|LINE|L2	154741.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	1.5	10.0	10.0	5.5	13.0	7.0
Merged-chr4-115657679-1	chr4	115657179	115658179	+	541.0	f1_c57bl6.idr	Intergenic	RLTR1D2_MM|LTR|ERV1	-9974.0	NM_007823	13120.0	Mm.1840	NM_007823	ENSMUSG00000028713	Cyp4b1	-	cytochrome P450, family 4, subfamily b, polypeptide 1	protein-coding	0.0	0.0	1.5	0.0	2.5	0.0
Merged-chr7-29001594-1	chr7	29001094	29002094	+	541.0	f1_c57bl6.idr	intron (NM_001355054, intron 28 of 31)	intron (NM_001355054, intron 28 of 31)	18740.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	0.0	3.5	0.0	0.0	6.5	0.0
Merged-chr3-145988511-2	chr3	145988011	145989011	+	541.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001166064, exon 1 of 7)	exon (NM_001166064, exon 1 of 7)	641.0	NM_001166064	214804.0	Mm.268854	NM_001166064	ENSMUSG00000036863	Syde2	C430017H16Rik	synapse defective 1, Rho GTPase, homolog 2 (C. elegans)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-26743949-1	chr8	26743449	26744449	+	541.0	f1_balb.idr	Intergenic	Lx2|LINE|L1	80474.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0.0	3.0	4.0	4.5	5.5	5.5
Merged-chr13-52912104-1	chr13	52911604	52912604	+	541.0	f1_balb.idr	intron (NM_016709, intron 3 of 9)	intron (NM_016709, intron 3 of 9)	17573.0	NM_016709	11992.0	Mm.252034	NM_016709	ENSMUSG00000021460	Auh	C77140|W91705	AU RNA binding protein/enoyl-coenzyme A hydratase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-34728493-1	chr2	34727993	34728993	+	541.0	f1_balb.idr	exon (NM_001356441, exon 4 of 27)	exon (NM_001356441, exon 4 of 27)	26739.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-6387216-1	chr19	6386716	6387716	+	541.0	f1_balb.idr	intron (NM_011224, intron 5 of 19)	intron (NM_011224, intron 5 of 19)	2808.0	NM_011224	19309.0	Mm.27806	NM_011224	ENSMUSG00000032648	Pygm	AI115133|PG	muscle glycogen phosphorylase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-100249349-1	chr12	100248849	100249849	+	541.0	f1_balb.idr	Intergenic	Intergenic	-27260.0	NR_045741	100038713.0	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-105517089-1	chr5	105516589	105517589	+	541.0	f1_balb.idr	Intergenic	Intergenic	-2382.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr14-61045904-1	chr14	61045404	61046404	+	541.0	f1_balb.idr	intron (NM_013869, intron 1 of 9)	intron (NM_013869, intron 1 of 9)	951.0	NM_013869	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	2.0	0.0	3.0	0.5	3.0	0.0
Merged-chr4-3255258-1	chr4	3254758	3255758	+	541.0	f1_balb.idr	Intergenic	MMERVK10C-int|LTR|ERVK	-69953.0	NM_001167535	100312471.0	Mm.377218	NM_001167535	ENSMUSG00000115466	Vmn1r3	Gm11778	vomeronasal 1 receptor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-62069849-1	chr18	62069349	62070349	+	541.0	f1_balb.idr	Intergenic	Intergenic	110132.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-54106512-1	chr11	54106012	54107012	+	541.0	f0_balb.idr	intron (NM_001136076, intron 2 of 15)	intron (NM_001136076, intron 2 of 15)	5588.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-120655391-1	chr2	120654891	120655891	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	45796.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	0.0	0.0	4.0	0.0	0.0	2.0
Merged-chr15-73655562-1	chr15	73655062	73656062	+	541.0	f1_balb.idr	Intergenic	PB1D10|SINE|Alu	-30818.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113740075-1	chr6	113739575	113740575	+	541.0	f1_c57bl6.idr	intron (NM_024206, intron 1 of 8)	intron (NM_024206, intron 1 of 8)	606.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-140140037-1	chr7	140139537	140140537	+	541.0	f1_c57bl6.idr	intron (NM_199301, intron 2 of 10)	intron (NM_199301, intron 2 of 10)	2473.0	NM_199301	212508.0	Mm.296088	NM_199301	ENSMUSG00000039018	Mtg1	Gm169|Gtpbp7	mitochondrial ribosome-associated GTPase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-47834038-1	chr12	47833538	47834538	+	541.0	f1_balb.idr	Intergenic	GSAT_MM|Satellite|Satellite	-1015263.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-87276249-1	chr17	87275749	87276749	+	541.0	f1_balb.idr	intron (NR_015506, intron 4 of 4)	intron (NR_015506, intron 4 of 4)	6565.0	NR_015506	74597.0	Mm.63783	NR_015506	ENSMUSG00000085287	4833418N02Rik	-	RIKEN cDNA 4833418N02 gene	ncRNA	6.0	5.0	5.5	9.0	22.5	17.0
Merged-chr4-59200978-1	chr4	59200478	59201478	+	541.0	f1_c57bl6.idr	intron (NM_011673, intron 1 of 8)	intron (NM_011673, intron 1 of 8)	11428.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-135647699-1	chr7	135647199	135648199	+	541.0	f1_c57bl6.idr	TTS (NR_015548)	TTS (NR_015548)	-4200.0	NM_001316681	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-24298751-2	chr10	24298251	24299251	+	541.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021509, intron 10 of 11)	intron (NM_021509, intron 10 of 11)	75234.0	NM_021509	59012.0	Mm.285934	NM_021509	ENSMUSG00000020000	Moxd1	3230402N08Rik|MNCb-5203	monooxygenase, DBH-like 1	protein-coding	0.0	0.0	0.0	0.5	7.5	0.0
Merged-chr10-95502440-2	chr10	95501940	95502940	+	541.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359477)	promoter-TSS (NM_001359477)	-491.0	NM_001359477	67270.0	Mm.30008	NM_026065	ENSMUSG00000062981	Mrpl42	2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|L42mt|MRP-L31|MRP-L42|MRP-S32|PTD007|Rpml31|S32mt	mitochondrial ribosomal protein L42	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-118297826-1	chr7	118297326	118298326	+	541.0	f0_c57.idr	Intergenic	Intergenic	53919.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-137430549-1	chr7	137430049	137431049	+	541.0	f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-7024.0	NM_001348093	30926.0	Mm.267692	NM_023140	ENSMUSG00000031068	Glrx3	PICOT|Txnl2	glutaredoxin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-166292014-1	chr2	166291514	166292514	+	541.0	f1_balb.idr	intron (NR_033467, intron 2 of 2)	(TG)n|Simple_repeat|Simple_repeat	18106.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	0.0	0.5	0.0	0.0	0.5	0.0
Merged-chr2-3331803-1	chr2	3331303	3332303	+	541.0	f1_c57bl6.idr	intron (NM_001013376, intron 1 of 1)	intron (NM_001013376, intron 1 of 1)	825.0	NM_001013376	227522.0	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-84681501-1	chr18	84681001	84682001	+	541.0	f0_balb.idr	intron (NM_023149, intron 2 of 11)	intron (NM_023149, intron 2 of 11)	558.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87657070-1	chr1	87656570	87657570	+	541.0	f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	36758.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-24729905-1	chr1	24729405	24730405	+	541.0	f1_balb.idr	intron (NM_026719, intron 8 of 15)	MTEb-int|LTR|ERVL-MaLR	50987.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	2.0	5.5	0.0	2.0	5.0	0.5
Merged-chr17-29092340-1	chr17	29091840	29092840	+	541.0	f1_c57bl6.idr	intron (NM_001111099, intron 1 of 2)	intron (NM_001111099, intron 1 of 2)	1361.0	NM_001111099	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	2.5	1.5	0.5	2.0	0.0	1.0
Merged-chr8-108897610-1	chr8	108897110	108898110	+	541.0	f1_balb.idr	intron (NM_007496, intron 4 of 9)	intron (NM_007496, intron 4 of 9)	-39250.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-44978690-1	chr2	44978190	44979190	+	541.0	f0_balb.idr	Intergenic	Intergenic	44487.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-44862628-1	chr7	44862128	44863128	+	541.0	f1_balb.idr	TTS (NM_133949)	TTS (NM_133949)	5225.0	NM_001290767	59047.0	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	0.0	0.0	1.0	0.0	0.0	0.0
Merged-chr10-99421025-1	chr10	99420525	99421525	+	541.0	f1_balb.idr	Intergenic	LTR16D|LTR|ERVL	157794.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-36857026-1	chr15	36856526	36857526	+	541.0	f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-60097.0	NM_001253806	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-111505094-1	chr12	111504594	111505594	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	-19271.0	NM_001033248	212539.0	Mm.81916	NM_001033248	ENSMUSG00000010529	Gm266	-	predicted gene 266	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-8508472-1	chr12	8507972	8508972	+	541.0	f0_c57.idr	Intergenic	RLTR28|LTR|ERVL	-8463.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	1.0	20.5	8.0	2.5	3.5	2.5
Merged-chr8-37886923-1	chr8	37886423	37887423	+	541.0	f1_c57bl6.idr	intron (NM_145841, intron 2 of 7)	MTD|LTR|ERVL-MaLR	365279.0	NR_029884	723860.0		NR_029884	ENSMUSG00000065457	Mir383	Mirn383|mir-383|mmu-mir-383	microRNA 383	ncRNA	9.5	7.0	10.5	3.0	0.0	1.0
Merged-chr10-117745717-2	chr10	117745217	117746217	+	541.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029875, intron 1 of 4)	intron (NM_029875, intron 1 of 4)	641.0	NM_029875	215436.0	Mm.256753	NM_029875	ENSMUSG00000060181	Slc35e3	9330166G04Rik|AI481200	solute carrier family 35, member E3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135687943-1	chr5	135687443	135688443	+	541.0	f1_balb.idr	Intergenic	B1_Mur1|SINE|Alu	-1202.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	3.0	18.5	7.5	3.5	19.0	10.5
Merged-chr11-6214259-1	chr11	6213759	6214759	+	541.0	f1_c57bl6.idr	intron (NM_207242, intron 17 of 18)	intron (NM_207242, intron 17 of 18)	-13808.0	NM_173748	209586.0	Mm.25321	NM_173748	ENSMUSG00000053838	Nudcd3	AI427847|BC024322|mKIAA1068	NudC domain containing 3	protein-coding	0.0	7.0	0.0	0.0	7.0	0.0
Merged-chr18-73625390-1	chr18	73624890	73625890	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	52685.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-27916464-1	chr17	27915964	27916964	+	541.0	f1_balb.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	7158.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	13.5	26.0	16.0	22.5	38.5	14.0
Merged-chr6-117432889-1	chr6	117432389	117433389	+	541.0	f1_balb.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-62346.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-20043891-1	chr4	20043391	20044391	+	541.0	f1_balb.idr	intron (NM_010281, intron 1 of 8)	RSINE1|SINE|B4	1839.0	NM_010281	14590.0	Mm.20461	NM_010281	ENSMUSG00000073987	Ggh	gamma-GH	gamma-glutamyl hydrolase	protein-coding	5.5	9.5	1.0	1.5	1.5	1.5
Merged-chr11-8429927-1	chr11	8429427	8430427	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	234608.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	1.5	2.5	2.5	1.5	1.5	1.5
Merged-chr2-167950049-1	chr2	167949549	167950549	+	541.0	f1_balb.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	17722.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-158065012-1	chr2	158064512	158065512	+	541.0	f1_balb.idr	intron (NM_027434, intron 6 of 6)	intron (NM_027434, intron 6 of 6)	26785.0	NR_040609	72340.0	Mm.443395	NR_040609	ENSMUSG00000100860	2010009K17Rik	-	RIKEN cDNA 2010009K17 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3462871-1	chr8	3462371	3463371	+	541.0	f1_c57bl6.idr	intron (NM_026951, intron 3 of 4)	B4A|SINE|B4	4777.0	NM_026951	69129.0	Mm.45279	NM_026951	ENSMUSG00000069633	Pex11g	1810022F11Rik|1810049N02Rik|Pex11c|Pex11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding	0.0	0.0	1.0	0.0	0.0	1.0
Merged-chr7-4499270-1	chr7	4498770	4499770	+	541.0	f1_balb.idr	intron (NM_029834, intron 1 of 21)	intron (NM_029834, intron 1 of 21)	2410.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-50252245-1	chr11	50251745	50252745	+	541.0	f1_balb.idr	Intergenic	RLTR23|LTR|ERV1	-13713.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-139331417-1	chr6	139330917	139331917	+	541.0	f1_balb.idr	Intergenic	B4A|SINE|B4	-8841.0	NR_045149	70962.0	Mm.410833	NR_045149	ENSMUSG00000108128	4922502N22Rik	-	RIKEN cDNA 4922502N22 gene	ncRNA	5.5	7.5	0.0	4.5	8.5	3.5
Merged-chr16-58016999-1	chr16	58016499	58017499	+	541.0	f0_balb.idr	Intergenic	Intergenic	-262262.0	NM_007739	12837.0	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding	0.0	2.5	0.5	10.5	11.0	16.0
Merged-chr12-91768460-1	chr12	91767960	91768960	+	541.0	f1_balb.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	17976.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147443254-2	chr4	147442754	147443754	+	541.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	CpG	-110023.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-17570966-1	chr15	17570466	17571466	+	541.0	f1_balb.idr	Intergenic	Lx|LINE|L1	792865.0	NM_009869	12565.0	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-130075947-1	chr5	130075447	130076447	+	541.0	f0_balb.idr	intron (NM_013837, intron 1 of 5)	(TTTTG)n|Simple_repeat|Simple_repeat	2621.0	NM_013837	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-95498417-1	chr3	95497917	95498917	+	541.0	f1_balb.idr	promoter-TSS (NM_007802)	promoter-TSS (NM_007802)	-793.0	NM_007802	13038.0	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-122681428-1	chr2	122680928	122681928	+	541.0	f1_c57bl6.idr	3' UTR (NM_001290993, exon 6 of 6)	3' UTR (NM_001290993, exon 6 of 6)	21235.0	NM_011774	22785.0	Mm.27801	NM_011774	ENSMUSG00000005802	Slc30a4	Znt4|lm|znT-4	solute carrier family 30 (zinc transporter), member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-48715793-1	chr4	48715293	48716293	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	52279.0	NM_026509	68016.0	Mm.133444	NM_026509	ENSMUSG00000028348	Cavin4	2310039E09Rik|Murc	caveolae associated 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-85501585-1	chr12	85501085	85502085	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	27695.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-119689266-1	chr13	119688766	119689766	+	541.0	f1_balb.idr	Intergenic	L1_Mus3|LINE|L1	-1085.0	NM_145942	208715.0	Mm.61526	NM_145942	ENSMUSG00000093930	Hmgcs1	B130032C06Rik	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-87740729-1	chr1	87740229	87741229	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	-15282.0	NM_029846	77040.0	Mm.272972	NM_029846	ENSMUSG00000026289	Atg16l1	1500009K01Rik|Apg16l|Atg16l|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-3184564-1	chr9	3184064	3185064	+	541.0	f0_balb.idr	Intergenic	Intergenic	15249.0	NR_027988	114673.0	Mm.422774	NM_053265	ENSMUSG00000042360	4930433N12Rik	-	RIKEN cDNA 4930433N12 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-139706448-1	chr5	139705948	139706948	+	541.0	f1_balb.idr	TTS (NM_174850)	TTS (NM_174850)	29885.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	3.5	0.0	1.0	5.0	3.0	1.0
Merged-chr15-80085433-1	chr15	80084933	80085933	+	541.0	f1_balb.idr	Intergenic	B1_Mus2|SINE|Alu	-2027.0	NM_013762	27367.0	Mm.290771	NM_013762	ENSMUSG00000060036	Rpl3	F2|J1	ribosomal protein L3	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr4-129784285-1	chr4	129783785	129784785	+	541.0	f1_balb.idr	Intergenic	B2_Mm1t|SINE|B2	-36194.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	1.5	12.0	2.5	5.0	13.0	5.0
Merged-chr6-4702309-2	chr6	4701809	4702809	+	541.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130188, intron 6 of 11)	intron (NM_001130188, intron 6 of 11)	44895.0	NM_001130188	20392.0	Mm.8739	NM_011360	ENSMUSG00000004631	Sgce	e-SG	sarcoglycan, epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-19504706-1	chr7	19504206	19505206	+	541.0	f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	3625.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-53317814-1	chr18	53317314	53318314	+	541.0	f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	ORR1D1|LTR|ERVL-MaLR	72152.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-61337908-1	chr9	61337408	61338408	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	-34458.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-51375491-1	chr3	51374991	51375991	+	541.0	f1_balb.idr	Intergenic	B3|SINE|B2	21056.0	NR_028121	67749.0	Mm.273339	NM_026358	ENSMUSG00000037161	Mgarp	4930583H14Rik|AI195347|CESP-1|HUMMR|Osap|Qsap	mitochondria localized glutamic acid rich protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-120506516-1	chr8	120506016	120507016	+	541.0	f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	17650.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-10322959-1	chr17	10322459	10323459	+	541.0	f1_balb.idr	Intergenic	Intergenic	-1643.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-37155870-1	chr19	37155370	37156370	+	541.0	f1_c57bl6.idr	intron (NM_198300, intron 2 of 10)	Tigger10|DNA|TcMar-Tigger	-17973.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-93124537-1	chr1	93124037	93125037	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	-10703.0	NM_001276710	11611.0	Mm.7457	NM_016702	ENSMUSG00000026272	Agxt	AGT|Agt1|Agxt1|SPT	alanine-glyoxylate aminotransferase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191227826-1	chr1	191227326	191228326	+	541.0	f0_balb.idr	Intergenic	Intergenic	3372.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-106767182-1	chr14	106766682	106767682	+	541.0	f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-280662.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	2.5	0.0	1.0	0.0	0.0	0.5
Merged-chr17-20679472-1	chr17	20678972	20679972	+	541.0	f1_balb.idr	Intergenic	Lx2|LINE|L1	-8036.0	NM_134191	171225.0	Mm.377184	NM_134191	ENSMUSG00000042848	Vmn1r226	V1re2	vomeronasal 1 receptor 226	protein-coding	0.0	0.0	1.0	0.0	5.5	0.0
Merged-chr15-21763269-1	chr15	21762769	21763769	+	541.0	f1_c57bl6.idr	Intergenic	RLTR9E|LTR|ERVK	651817.0	NM_001008420	215654.0	Mm.300909	NM_001008420	ENSMUSG00000040452	Cdh12	Cdhb	cadherin 12	protein-coding	0.0	0.0	0.0	0.0	2.0	2.5
Merged-chr7-100451921-1	chr7	100451421	100452421	+	541.0	f1_c57bl6.idr	intron (NM_001017985, intron 30 of 32)	intron (NM_001017985, intron 30 of 32)	-21070.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-60649029-1	chr13	60648529	60649529	+	541.0	f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	46818.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	16.5	40.5	24.0	13.5	20.5	22.0
Merged-chr11-79612400-2	chr11	79611900	79612900	+	541.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_003283, intron 2 of 2)	intron (NR_003283, intron 2 of 2)	10763.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-31964568-1	chr4	31964068	31965068	+	541.0	f0_c57.idr	intron (NM_009316, intron 1 of 16)	intron (NM_009316, intron 1 of 16)	461.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	36.0	78.5	70.0	20.0	31.0	72.5
Merged-chr1-180958506-1	chr1	180958006	180959006	+	541.0	f1_balb.idr	intron (NM_144794, intron 9 of 22)	intron (NM_144794, intron 9 of 22)	15988.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-65871360-1	chr3	65870860	65871860	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	86889.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-20127324-1	chr3	20126824	20127824	+	541.0	f1_c57bl6.idr	intron (NM_001355261, intron 5 of 7)	intron (NM_001355261, intron 5 of 7)	27792.0	NM_001355261	27357.0	Mm.6375	NM_013755	ENSMUSG00000019528	Gyg	AU017667|GN1|Gyg1	glycogenin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-29796361-1	chr17	29795861	29796861	+	541.0	f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-79344.0	NM_001163741	68597.0	Mm.390979	NM_026782	ENSMUSG00000024018	Ccdc167	1110021J02Rik	coiled-coil domain containing 167	protein-coding	2.0	4.5	0.5	2.0	8.5	0.5
Merged-chr18-36719640-1	chr18	36719140	36720140	+	541.0	f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	7175.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	4.5	7.5	13.5	23.5	14.0	17.0
Merged-chr7-80424818-1	chr7	80424318	80425318	+	541.0	f1_c57bl6.idr	Intergenic	B3|SINE|B2	-19382.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	2.5	13.0	6.5	4.5	11.0	3.0
Merged-chr19-9017690-1	chr19	9017190	9018190	+	541.0	f1_balb.idr	exon (NM_009643, exon 5 of 5)	exon (NM_009643, exon 5 of 5)	28406.0	NM_001286518	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-91421707-1	chr16	91421207	91422207	+	541.0	f1_balb.idr	intron (NM_008349, intron 5 of 6)	intron (NM_008349, intron 5 of 6)	15472.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.0	2.0	1.5	0.0	1.5	2.5
Merged-chr12-113131023-1	chr12	113130523	113131523	+	541.0	f1_c57bl6.idr	intron (NM_001346696, intron 13 of 19)	intron (NM_001346696, intron 13 of 19)	-9213.0	NM_024223	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-13237241-1	chr14	13236741	13237741	+	541.0	f0_balb.idr	intron (NR_121588, intron 2 of 3)	intron (NR_121588, intron 2 of 3)	47397.0	NR_121589	328354.0	Mm.252404	NM_177813	ENSMUSG00000051729	Gm5087	C630025C03|EG328354	predicted gene 5087	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-55147944-1	chr14	55147444	55148444	+	541.0	f0_balb.idr	Intergenic	Intergenic	-31009.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-29254120-1	chr7	29253620	29254620	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	-5653.0	NM_028179	72275.0	Mm.441142	NM_028179	ENSMUSG00000030587	2200002D01Rik	2010005J02Rik|H2RSP|IMUP|IMUP-1|IMUP-2	RIKEN cDNA 2200002D01 gene	protein-coding	7.5	8.5	2.0	5.0	3.5	3.5
Merged-chr7-27236357-2	chr7	27235857	27236857	+	541.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133770, intron 4 of 14)	ID_B1|SINE|B4	3344.0	NM_133770	76889.0	Mm.124728	NM_133770	ENSMUSG00000003762	Coq8b	0610012P18Rik|Adck4	coenzyme Q8B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-77555900-1	chr10	77555400	77556400	+	541.0	f1_balb.idr	intron (NM_008404, intron 8 of 15)	intron (NM_008404, intron 8 of 15)	25552.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-15851380-1	chr15	15850880	15851880	+	541.0	f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-926721.0	NM_009869	12565.0	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-141949568-1	chr4	141949068	141950068	+	541.0	f1_c57bl6.idr	intron (NM_177868, intron 13 of 31)	intron (NM_177868, intron 13 of 31)	-33424.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-38435136-1	chr16	38434636	38435636	+	541.0	f1_c57bl6.idr	Intergenic	MLTR25A|LTR|ERVK	-1991.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96310338-1	chr11	96309838	96310838	+	541.0	f0_balb.idr	Intergenic	Intergenic	-3428.0	NR_131758	75395.0	Mm.440014	NR_131758	ENSMUSG00000085645	Hoxb5os	0610040B09Rik|AV302770|Hoxb5/6as	homeobox B5 and homeobox B6, opposite strand	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-81105983-1	chr13	81105483	81106483	+	541.0	f1_balb.idr	intron (NM_054053, intron 88 of 89)	L1_Mur2|LINE|L1	141909.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96127189-2	chr11	96126689	96127689	+	541.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6597.0	NM_172799	237930.0	Mm.249912	NM_172799	ENSMUSG00000038756	Ttll6	4932418K24Rik|D11Moh43e|D11Moh44e|t8130b59	tubulin tyrosine ligase-like family, member 6	protein-coding	0.5	0.0	0.0	0.0	0.0	2.5
Merged-chr12-8321780-2	chr12	8321280	8322280	+	541.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021429, intron 3 of 6)	intron (NM_021429, intron 3 of 6)	8347.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-40331845-1	chr18	40331345	40332345	+	541.0	f1_balb.idr	intron (NM_026135, intron 1 of 1)	intron (NM_026135, intron 1 of 1)	73484.0	NM_026135	383348.0	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	2.5	1.5	0.5	0.5	0.0	1.0
Merged-chr18-69407019-1	chr18	69406519	69407519	+	541.0	f0_c57.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	60859.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-80026841-1	chr15	80026341	80027341	+	541.0	f1_balb.idr	Intergenic	Intergenic	-12033.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	9.0	13.0	2.0	9.0	19.0	8.5
Merged-chr10-69186972-1	chr10	69186472	69187472	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	-21580.0	NM_001252636	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-7320080-1	chr17	7319580	7320580	+	541.0	f0_c57.idr	Intergenic	Intergenic	-4580.0	NM_011553	21461.0	Mm.264651	NM_011553	ENSMUSG00000071322	Tcp10a	D17Leh66A|D17Leh66aa|Gm10326|T66A-a|Tcp-10a	t-complex protein 10a	protein-coding	1.0	1.0	2.5	0.0	1.0	0.0
Merged-chr4-122850088-1	chr4	122849588	122850588	+	541.0	f1_balb.idr	intron (NM_008917, intron 5 of 8)	intron (NM_008917, intron 5 of 8)	13861.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	20.0	7.5	18.5	12.5	3.0	12.5
Merged-chr4-40699957-1	chr4	40699457	40700457	+	541.0	f1_balb.idr	intron (NM_001025444, intron 1 of 7)	RLTR20B1|LTR|ERVK	2959.0	NM_025545	66408.0	Mm.430710	NM_025545	ENSMUSG00000028411	Aptx	2410016G21Rik|AA388047|FHA-HIT	aprataxin	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-8997975-2	chr4	8997475	8998475	+	541.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	246651.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-62817949-1	chr11	62817449	62818449	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	-2304.0	NM_053169	94092.0	Mm.117087	NM_053169	ENSMUSG00000047821	Trim16	9130006M08Rik|AI482483|EBBP	tripartite motif-containing 16	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-97364001-1	chr6	97363501	97364501	+	541.0	f1_balb.idr	intron (NM_145148, intron 6 of 23)	intron (NM_145148, intron 6 of 23)	95285.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-15007131-1	chr3	15006631	15007631	+	541.0	f0_balb.idr	Intergenic	RLTR45|LTR|ERVK	35930.0	NR_040550	77127.0	Mm.195792	NR_040549	ENSMUSG00000098008	A930001A20Rik	-	RIKEN cDNA A930001A20 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-57502285-1	chr4	57501785	57502785	+	541.0	f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-65963.0	NM_001304544	677884.0	Mm.331630	NM_001304544	ENSMUSG00000089945	Pakap	AF064781|Gm20459|Palm2-Akap2|Palm2Akap2|Palm2akap2	paralemmin A kinase anchor protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-52928683-1	chr13	52928183	52929183	+	541.0	f1_c57bl6.idr	intron (NM_016709, intron 1 of 9)	PB1D7|SINE|Alu	994.0	NM_016709	11992.0	Mm.252034	NM_016709	ENSMUSG00000021460	Auh	C77140|W91705	AU RNA binding protein/enoyl-coenzyme A hydratase	protein-coding	16.0	5.5	5.5	0.0	9.0	0.5
Merged-chr8-84570577-1	chr8	84570077	84571077	+	541.0	f0_balb.idr	intron (NM_001252060, intron 22 of 47)	intron (NM_001252060, intron 22 of 47)	92275.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	3.5	1.5	0.0	8.5	3.0	6.5
Merged-chr11-115201211-1	chr11	115200711	115201711	+	541.0	f1_c57bl6.idr	intron (NM_001033393, intron 4 of 9)	intron (NM_001033393, intron 4 of 9)	13724.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	0.0	0.0	1.5	0.0	0.0	1.5
Merged-chr19-5622805-1	chr19	5622305	5623305	+	541.0	f1_c57bl6.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	-12711.0	NM_178637	81601.0	Mm.228930	NM_178637	ENSMUSG00000024926	Kat5	AI839539|CPLA2|Htatip|Htatip1|PLIP|Tip55|Tip60	K(lysine) acetyltransferase 5	protein-coding	20.0	53.5	27.5	24.0	27.0	29.5
Merged-chr16-75876156-1	chr16	75875656	75876656	+	541.0	f0_balb.idr	intron (NM_023380, intron 5 of 7)	intron (NM_023380, intron 5 of 7)	33110.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-43880402-1	chr19	43879902	43880902	+	541.0	f0_balb.idr	promoter-TSS (NM_001306088)	promoter-TSS (NM_001306088)	-634.0	NM_001306088	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-90888810-1	chr5	90888310	90889310	+	541.0	f1_balb.idr	Intergenic	B4A|SINE|B4	-2435.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-82877508-1	chr15	82877008	82878008	+	541.0	f1_c57bl6.idr	intron (NM_001114140, intron 1 of 5)	MIR|SINE|MIR	20953.0	NR_027799	21378.0	Mm.417272	NR_027799		Tbrg3	TB-11	transforming growth factor beta regulated gene 3	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118807958-1	chr14	118807458	118808458	+	541.0	f1_balb.idr	intron (NM_001160097, intron 1 of 3)	intron (NM_001160097, intron 1 of 3)	20087.0	NM_001160097	58187.0	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-31398870-1	chr14	31398370	31399370	+	541.0	f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	18807.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-147839428-2	chr1	147838928	147839928	+	541.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	1341741.0	NM_001145807	215378.0	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	0.0	0.0	0.0	0.5	0.0	0.0
Merged-chr2-34744553-1	chr2	34744053	34745053	+	541.0	f1_c57bl6.idr	intron (NR_151469, intron 2 of 26)	intron (NR_151469, intron 2 of 26)	10679.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-106760849-1	chr1	106760349	106761349	+	541.0	f1_balb.idr	Intergenic	Intergenic	-1107.0	NM_001316750	70750.0	Mm.458911	NM_027534	ENSMUSG00000009905	Kdsr	6330410P18Rik|9430079B08Rik|Fvt1	3-ketodihydrosphingosine reductase	protein-coding	16.0	34.5	25.5	6.0	30.0	21.0
Merged-chr14-59364727-2	chr14	59364227	59365227	+	541.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199015, intron 1 of 10)	MLTR73|LTR|ERV1	763.0	NM_199015	219132.0	Mm.479285	NM_199015	ENSMUSG00000068245	Phf11d	D14Ertd668e|Phf11|Phf11l	PHD finger protein 11D	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-76244491-1	chr6	76243991	76244991	+	541.0	f1_balb.idr	Intergenic	L1_Mus1|LINE|L1	-997986.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-37154327-1	chr1	37153827	37154827	+	541.0	f0_balb.idr	Intergenic	Intergenic	-63951.0	NM_001282010	12790.0	Mm.214224	NM_009918	ENSMUSG00000026114	Cnga3	CNG3	cyclic nucleotide gated channel alpha 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-28360731-2	chr7	28360231	28361231	+	541.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001083912, exon 19 of 19)	exon (NM_001083912, exon 19 of 19)	9191.0	NR_028129	100302567.0		NR_028129		AF357399	MBI-142	snoRNA AF357399	snoRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98228707-1	chr7	98228207	98229207	+	541.0	f1_c57bl6.idr	intron (NM_001360616, intron 6 of 9)	B1_Mus1|SINE|Alu	-29232.0	NM_001081167	272411.0	Mm.98333	NM_001081167	ENSMUSG00000074004	B3gnt6	BC039789|Core-3|Core3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17674968-1	chr6	17674468	17675468	+	541.0	f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-19026.0	NM_001289626	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.0	0.5	0.0	0.5	0.0	1.5
Merged-chr5-31571954-1	chr5	31571454	31572454	+	541.0	f1_c57bl6.idr	promoter-TSS (NR_102275)	promoter-TSS (NR_102275)	-557.0	NR_102275	100740.0	Mm.23370	NR_102275		AI839979	-	expressed sequence AI839979	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-70397527-1	chr11	70397027	70398027	+	541.0	f1_c57bl6.idr	exon (NM_029231, exon 9 of 17)	exon (NM_029231, exon 9 of 17)	12504.0	NM_029231	75273.0	Mm.340601	NM_029231	ENSMUSG00000018921	Pelp1	4930563C04Rik|MNAR	proline, glutamic acid and leucine rich protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-138075385-1	chr4	138074885	138075885	+	541.0	f1_c57bl6.idr	intron (NM_001256195, intron 4 of 34)	MTB_Mm|LTR|ERVL-MaLR	63133.0	NR_126429	73563.0	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	3.5	0.0	4.5	2.5	7.5	2.0
Merged-chr11-20445652-1	chr11	20445152	20446152	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	-97601.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0.0	0.0	2.0	3.0	0.0	1.5
Merged-chr15-34042370-1	chr15	34041870	34042870	+	541.0	f1_balb.idr	Intergenic	Intergenic	-40349.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0.0	8.5	15.0	0.5	2.5	3.0
Merged-chr14-106534434-1	chr14	106533934	106534934	+	541.0	f1_c57bl6.idr	Intergenic	Lx2A1|LINE|L1	-47914.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	0.0	0.0	0.0	4.5	3.0	5.0
Merged-chr12-73318265-1	chr12	73317765	73318765	+	541.0	f0_balb.idr	intron (NM_001037717, intron 4 of 15)	MER102c|DNA|hAT-Charlie	31417.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	2.5	4.5	11.5	5.5	4.0	4.0
Merged-chr1-132308786-1	chr1	132308286	132309286	+	541.0	f1_balb.idr	Intergenic	Intergenic	-7339.0	NM_001195025	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-157141347-1	chr2	157140847	157141847	+	541.0	f1_balb.idr	Intergenic	MusHAL1|LINE|L1	-6125.0	NM_018851	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-75558117-1	chr9	75557617	75558617	+	541.0	f1_balb.idr	intron (NM_001357828, intron 1 of 10)	intron (NM_001357828, intron 1 of 10)	1540.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	0.0	2.0	4.0	0.5	6.5	1.5
Merged-chr7-97154469-2	chr7	97153969	97154969	+	541.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	72718.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	1.0	4.5	0.0	0.0	7.5	1.5
Merged-chr1-12990457-1	chr1	12989957	12990957	+	541.0	f0_balb.idr	exon (NM_172841, exon 1 of 9)	exon (NM_172841, exon 1 of 9)	678.0	NM_172841	240726.0	Mm.24481	NM_172841	ENSMUSG00000025938	Slco5a1	4732454B15|A630033C23Rik|AA407151	solute carrier organic anion transporter family, member 5A1	protein-coding	1.0	1.0	0.0	0.0	0.0	0.0
Merged-chr18-34960051-1	chr18	34959551	34960551	+	541.0	f1_c57bl6.idr	Intergenic	RLTR19-int|LTR|ERVK	-5700.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	0.0	0.0	1.0	0.0	0.5	0.5
Merged-chr8-20545741-1	chr8	20545241	20546241	+	541.0	f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-69186.0	NM_001270553	100861668.0	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-98957359-1	chr9	98956859	98957859	+	541.0	f1_c57bl6.idr	3' UTR (NM_012020, exon 1 of 1)	3' UTR (NM_012020, exon 1 of 1)	1752.0	NM_012020	26927.0	Mm.151239	NM_012020	ENSMUSG00000050397	Foxl2	AU045128|BPES|PINTO|Pfrk	forkhead box L2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-147861454-1	chr5	147860954	147861954	+	541.0	f0_balb.idr	intron (NM_025624, intron 1 of 5)	intron (NM_025624, intron 1 of 5)	826.0	NM_025624	66537.0	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-25774938-1	chr8	25774438	25775438	+	541.0	f0_balb.idr	intron (NM_026121, intron 2 of 4)	RSINE1|SINE|B4	10271.0	NM_026121	67384.0	Mm.118400	NM_026121	ENSMUSG00000037316	Bag4	2410112I15Rik|SODD	BCL2-associated athanogene 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-102300121-1	chr11	102299621	102300621	+	541.0	f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3492.0	NM_001098837	217218.0	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	0.0	0.0	1.5	0.0	0.0	1.5
Merged-chr11-97545379-1	chr11	97544879	97545879	+	541.0	f1_balb.idr	intron (NM_018873, intron 3 of 19)	intron (NM_018873, intron 3 of 19)	29747.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	0.0	0.5	0.0	1.5	0.0	0.5
Merged-chr4-119204920-1	chr4	119204420	119205420	+	541.0	f0_c57.idr	TTS (NM_029198)	TTS (NM_029198)	9395.0	NM_001038998	69216.0	Mm.36697	NM_024462	ENSMUSG00000028643	Svbp	2410005K17Rik|AI851162|Ccdc23	small vasohibin binding protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120184549-1	chr11	120184049	120185049	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	5307.0	NR_030682	100042332.0	Mm.269766	NR_030682		2810410L24Rik	-	RIKEN cDNA 2810410L24 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125694388-2	chr8	125693888	125694888	+	541.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24570.0	NM_028908	74393.0	Mm.41709	NM_028908	ENSMUSG00000050930	Map10	4933403G14Rik|AI835009|mKIAA1383	microtubule-associated protein 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-96989934-1	chr11	96989434	96990434	+	541.0	f1_balb.idr	Intergenic	Intergenic	-12246.0	NM_001080964	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-120490760-2	chr11	120490260	120491260	+	540.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1077.0	NM_013770	27376.0	Mm.3991	NM_013770	ENSMUSG00000025792	Slc25a10	Dic	solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-94131736-2	chr11	94131236	94132236	+	540.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79718.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-42067747-2	chr13	42067247	42068247	+	540.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	15726.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-47075771-2	chr7	47075271	47076271	+	540.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	7453.0	NR_106023	102465639.0		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-118239040-2	chr11	118238540	118239540	+	540.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	IMPB_01|Satellite|Satellite	9552.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	4.0	13.0	4.0	4.0	12.5	4.0
Merged-chr16-3905396-2	chr16	3904896	3905896	+	540.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029090)	TTS (NM_029090)	3257.0	NR_153801	105246059.0		NR_153801		Gm41410	-	predicted gene, 41410	ncRNA	2.0	0.0	0.0	2.0	0.0	0.0
Merged-chr10-79848399-2	chr10	79847899	79848899	+	540.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	RLTR11A2|LTR|ERVK	-6033.0	NM_001077363	19205.0	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127278122-2	chr10	127277622	127278622	+	540.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001190454, exon 12 of 14)	exon (NM_001190454, exon 12 of 14)	10896.0	NM_001347171	110962.0	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-4556354-2	chr6	4555854	4556854	+	540.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44712.0	NM_145398	213819.0	Mm.270703	NM_145398	ENSMUSG00000015189	Casd1	Cas1|Cast1|SOAT	CAS1 domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-152538660-1	chr1	152538160	152539160	+	540.0	f1_balb.idr	intron (NM_016846, intron 10 of 17)	intron (NM_016846, intron 10 of 17)	86557.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117451961-1	chr10	117451461	117452461	+	540.0	f1_balb.idr	Intergenic	B1_Mur2|SINE|Alu	-4526.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	12.0	7.5	8.5	14.0	8.5	7.0
Merged-chr18-82463988-1	chr18	82463488	82464488	+	540.0	f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-11135.0	NM_001025245	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-37361970-1	chr11	37361470	37362470	+	540.0	f1_balb.idr	Intergenic	Intergenic	-297019.0	NR_131154	100039148.0	Mm.120467	NR_131154	ENSMUSG00000087388	Gm12128	-	predicted gene 12128	ncRNA	0.0	0.0	5.5	0.0	1.0	0.0
Merged-chr2-32711781-1	chr2	32711281	32712281	+	540.0	f1_balb.idr	intron (NM_130860, intron 2 of 6)	intron (NM_130860, intron 2 of 6)	1003.0	NM_130860	107951.0	Mm.27557	NM_130860	ENSMUSG00000009555	Cdk9	PITALRE	cyclin-dependent kinase 9 (CDC2-related kinase)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-99791178-1	chr12	99790678	99791678	+	540.0	f1_c57bl6.idr	intron (NM_030172, intron 5 of 5)	intron (NM_030172, intron 5 of 5)	92264.0	NM_030172	78767.0	Mm.235920	NM_030172	ENSMUSG00000021176	Efcab11	2610021K21Rik|2610110A13Rik	EF-hand calcium binding domain 11	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-123888767-1	chr5	123888267	123889267	+	540.0	f1_c57bl6.idr	Intergenic	Intergenic	-8747.0	NM_175520	243270.0	Mm.33362	NM_175520	ENSMUSG00000049241	Hcar1	Gpr81	hydrocarboxylic acid receptor 1	protein-coding	6.0	0.0	1.0	0.0	0.0	0.0
Merged-chr3-138197709-1	chr3	138197209	138198209	+	540.0	f1_balb.idr	Intergenic	Intergenic	-10996.0	NM_001163386	67741.0	Mm.383221	NM_001163385	ENSMUSG00000012042	4930579F01Rik	-	RIKEN cDNA 4930579F01 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr1-111402039-1	chr1	111401539	111402539	+	540.0	f1_c57bl6.idr	Intergenic	Intergenic	-424446.0	NM_001081386	227485.0	Mm.322070	NM_001081386	ENSMUSG00000047216	Cdh19	-	cadherin 19, type 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-86182341-1	chr10	86181841	86182841	+	540.0	f1_balb.idr	intron (NM_013722, intron 6 of 13)	intron (NM_013722, intron 6 of 13)	86487.0	NR_038024	78170.0	Mm.444790	NR_038024	ENSMUSG00000112493	4930486F22Rik	-	RIKEN cDNA 4930486F22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-60478826-1	chr9	60478326	60479326	+	540.0	f0_balb.idr	intron (NM_001040426, intron 3 of 17)	intron (NM_001040426, intron 3 of 17)	32209.0	NM_001040426	207596.0	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-12865868-1	chr15	12865368	12866368	+	540.0	f1_balb.idr	intron (NM_026799, intron 13 of 34)	intron (NM_026799, intron 13 of 34)	41053.0	NM_001130149	14000.0	Mm.293142	NM_026799	ENSMUSG00000022191	Drosha	1110013A17Rik|AI874853|Etohi2|Rn3|Rnasen	drosha, ribonuclease type III	protein-coding	9.5	38.5	14.0	6.0	15.5	10.0
Merged-chr10-87836645-1	chr10	87836145	87837145	+	540.0	f1_balb.idr	Intergenic	Intergenic	-21620.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191083962-1	chr1	191083462	191084462	+	540.0	f1_balb.idr	3' UTR (NM_198654, exon 6 of 6)	3' UTR (NM_198654, exon 6 of 6)	-14452.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	2.0	2.0	0.5	0.0	3.0	4.0
Merged-chr17-56938349-1	chr17	56937849	56938849	+	540.0	f1_balb.idr	Intergenic	Intergenic	-2961.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-119039740-1	chr11	119039240	119040240	+	540.0	f1_balb.idr	intron (NM_013926, intron 4 of 4)	intron (NM_013926, intron 4 of 4)	1173.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-11400340-1	chr15	11399840	11400840	+	540.0	f1_c57bl6.idr	promoter-TSS (NM_033074)	promoter-TSS (NM_033074)	-682.0	NM_033074	110960.0	Mm.286061	NM_033074	ENSMUSG00000022241	Tars	D15Wsu59e|ThrRS	threonyl-tRNA synthetase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-100494586-1	chr10	100494086	100495086	+	540.0	f1_balb.idr	intron (NM_146009, intron 5 of 52)	intron (NM_146009, intron 5 of 52)	6297.0	NM_146009	216274.0	Mm.229114	NM_146009	ENSMUSG00000019971	Cep290	BC004690|Nphp6|b2b1454Clo|b2b1752Clo	centrosomal protein 290	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-135398222-1	chr5	135397722	135398722	+	540.0	f1_c57bl6.idr	Intergenic	Intergenic	-3676.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-34883727-1	chr4	34883227	34884227	+	540.0	f0_balb.idr	promoter-TSS (NM_013889)	promoter-TSS (NM_013889)	-779.0	NM_013889	30046.0	Mm.38193	NM_013889	ENSMUSG00000039967	Zfp292	5730450D02Rik|5830493J20Rik|9430062L07Rik|AI449016|Krox-10|Zfp-15|Zfp15|Zn-15|Zn-16|mKIAA0530	zinc finger protein 292	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-126948467-1	chr7	126947967	126948967	+	540.0	f1_balb.idr	exon (NM_001347657, exon 1 of 3)	exon (NM_001347657, exon 1 of 3)	692.0	NM_001347657	233879.0	Mm.444143	NM_001039645	ENSMUSG00000046378	Asphd1	A830007L07Rik|Gm168	aspartate beta-hydroxylase domain containing 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-38727685-1	chr9	38727185	38728185	+	540.0	f1_balb.idr	intron (NM_001145957, intron 7 of 18)	RMER17C|LTR|ERVK	9417.0	NM_172767	67776.0	Mm.290950	NM_172767	ENSMUSG00000023186	Vwa5a	5830475I06Rik|AW552491|BCSC-1|E130119J22|Loh11cr2a	von Willebrand factor A domain containing 5A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-125403262-1	chr5	125402762	125403762	+	540.0	f1_balb.idr	Intergenic	B3|SINE|B2	-13245.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	4.0	17.0	2.0	4.0	14.5	2.0
Merged-chr7-28788056-1	chr7	28787556	28788556	+	540.0	f1_c57bl6.idr	promoter-TSS (NM_177158)	promoter-TSS (NM_177158)	-913.0	NM_001358916	320435.0	Mm.74632	NM_177158	ENSMUSG00000051735	Rinl	5830482F20Rik|9930116N10Rik	Ras and Rab interactor-like	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-11979842-1	chr12	11979342	11980342	+	540.0	f0_balb.idr	Intergenic	Intergenic	-96943.0	NR_003964	627110.0	Mm.194735	NR_003964		Tubb2a-ps2	C79445	tubulin, beta 2a, pseudogene 2	pseudo	0.0	3.5	3.0	0.0	0.0	0.0
Merged-chr8-115479474-1	chr8	115478974	115479974	+	540.0	f1_balb.idr	Intergenic	Intergenic	227420.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-75679494-1	chr10	75678994	75679994	+	540.0	f1_balb.idr	intron (NM_172549, intron 29 of 36)	intron (NM_172549, intron 29 of 36)	-35486.0	NM_027890	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-55217290-1	chr19	55216790	55217790	+	540.0	f1_c57bl6.idr	exon (NM_001081076, exon 13 of 21)	exon (NM_001081076, exon 13 of 21)	23946.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-65243467-1	chr13	65242967	65243967	+	540.0	f1_balb.idr	Intergenic	Intergenic	-35387.0	NM_178364	170936.0	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding	0.0	0.0	5.0	0.0	0.0	2.0
Merged-chr10-117791680-1	chr10	117791180	117792180	+	540.0	f1_c57bl6.idr	intron (NM_134010, intron 1 of 27)	intron (NM_134010, intron 1 of 27)	1025.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-142531421-1	chr2	142530921	142531921	+	540.0	f1_balb.idr	Intergenic	Intergenic	370043.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.0	5.0	0.5	0.0	2.0	0.5
Merged-chr10-60373884-2	chr10	60373384	60374384	+	540.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 37 of 68)	intron (NM_001252635, intron 37 of 68)	-25842.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-107888856-1	chr9	107888356	107889356	+	540.0	f1_c57bl6.idr	intron (NM_028369, intron 1 of 5)	intron (NM_028369, intron 1 of 5)	727.0	NM_028369	72825.0	Mm.38037	NM_028369	ENSMUSG00000032583	Mon1a	2810468K17Rik	MON1 homolog A, secretory traffciking associated	protein-coding	5.5	5.0	4.5	4.0	0.5	4.5
Merged-chr4-62396013-1	chr4	62395513	62396513	+	540.0	f0_balb.idr	intron (NM_139291, intron 3 of 3)	RLTR19-int|LTR|ERVK	12610.0	NM_139291	66440.0	Mm.109930	NM_139291	ENSMUSG00000066149	Cdc26	2010012C09Rik	cell division cycle 26	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-78470220-1	chr10	78469720	78470720	+	540.0	f1_c57bl6.idr	Intergenic	Intergenic	-5272.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-7847090-1	chr6	7846590	7847590	+	540.0	f1_c57bl6.idr	intron (NM_052993, intron 1 of 3)	intron (NM_052993, intron 1 of 3)	1866.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-34843995-2	chr4	34843495	34844495	+	540.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013889, intron 1 of 7)	intron (NM_013889, intron 1 of 7)	38953.0	NM_013889	30046.0	Mm.38193	NM_013889	ENSMUSG00000039967	Zfp292	5730450D02Rik|5830493J20Rik|9430062L07Rik|AI449016|Krox-10|Zfp-15|Zfp15|Zn-15|Zn-16|mKIAA0530	zinc finger protein 292	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-125489625-1	chr8	125489125	125490125	+	540.0	f0_balb.idr	intron (NM_001357372, intron 3 of 21)	intron (NM_001357372, intron 3 of 21)	3208.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	21.5	19.0	52.5	29.5	70.0	50.0
Merged-chr5-101965200-1	chr5	101964700	101965700	+	540.0	f1_balb.idr	intron (NM_172882, intron 5 of 66)	B3A|SINE|B2	104721.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	5.5	11.5	7.5	2.5	1.0	15.5
Merged-chr3-132115215-1	chr3	132114715	132115715	+	540.0	f1_c57bl6.idr	intron (NM_020265, intron 1 of 3)	LSU-rRNA_Hsa|rRNA|rRNA	29923.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-45120250-1	chr7	45119750	45120750	+	540.0	f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1507.0	NR_029560	387168.0		NR_029560	ENSMUSG00000065495	Mir150	Mirn150|mir-150|mmu-mir-150	microRNA 150	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-90828283-1	chr8	90827783	90828783	+	540.0	f1_c57bl6.idr	promoter-TSS (NM_177224)	promoter-TSS (NM_177224)	-552.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	16.0	7.5	12.0	18.0	23.5	17.0
Merged-chr4-14865206-1	chr4	14864706	14865706	+	540.0	f0_balb.idr	intron (NM_028264, intron 1 of 6)	intron (NM_028264, intron 1 of 6)	987.0	NM_028264	72519.0	Mm.279158	NM_028264	ENSMUSG00000028221	Tmem55a	2610319K07Rik|AI315591|AV001360|Pip4p2	transmembrane protein 55A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-89608790-1	chr18	89608290	89609290	+	540.0	f1_c57bl6.idr	intron (NM_001039173, intron 1 of 7)	intron (NM_001039173, intron 1 of 7)	160346.0	NM_001039173	623279.0	Mm.447164	NM_001039173	ENSMUSG00000073514	Dok6	Dok-6	docking protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-113389550-1	chr6	113389050	113390050	+	540.0	f1_balb.idr	3' UTR (NM_001170486, exon 5 of 5)	3' UTR (NM_001170486, exon 5 of 5)	290.0	NM_001142732	101100.0	Mm.388573	NM_133923	ENSMUSG00000030276	Ttll3	4833441J24Rik|AI450050	tubulin tyrosine ligase-like family, member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43043638-1	chr4	43043138	43044138	+	540.0	f1_c57bl6.idr	intron (NR_045567, intron 1 of 7)	intron (NR_045567, intron 1 of 7)	2582.0	NR_045567	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	4.0	16.0	4.5	5.0	26.0	19.0
Merged-chr8-124723124-1	chr8	124722624	124723624	+	540.0	f1_c57bl6.idr	intron (NM_026855, intron 1 of 5)	intron (NM_026855, intron 1 of 5)	985.0	NM_026855	68865.0	Mm.22779	NM_026855	ENSMUSG00000031982	Arv1	1110067L22Rik|AI461928|AW121084	ARV1 homolog, fatty acid homeostasis modulator	protein-coding	7.0	30.0	8.5	9.0	10.5	5.5
Merged-chr10-81101896-1	chr10	81101396	81102396	+	540.0	f1_balb.idr	Intergenic	Intergenic	-2720.0	NR_049187	100885826.0		NR_049187	ENSMUSG00000093498	Mir5615-2	Gm23367|mir-5615-2|mmu-mir-5615-2	microRNA 5615-2	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr16-94721287-1	chr16	94720787	94721787	+	540.0	f1_c57bl6.idr	Intergenic	Intergenic	109868.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-86131042-1	chr15	86130542	86131542	+	540.0	f1_c57bl6.idr	intron (NM_172611, intron 14 of 18)	intron (NM_172611, intron 14 of 18)	-54686.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-21086117-1	chr15	21085617	21086617	+	540.0	f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-25335.0	NM_001008420	215654.0	Mm.300909	NM_001008420	ENSMUSG00000040452	Cdh12	Cdhb	cadherin 12	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94896552-1	chr8	94896052	94897052	+	540.0	f1_c57bl6.idr	Intergenic	Intergenic	-20240.0	NM_053246	114255.0	Mm.203949	NM_053246	ENSMUSG00000040631	Dok4	-	docking protein 4	protein-coding	0.0	3.5	0.0	2.0	0.0	0.0
Merged-chr1-58290298-1	chr1	58289798	58290798	+	540.0	f1_balb.idr	intron (NM_001008419, intron 7 of 35)	intron (NM_001008419, intron 7 of 35)	11972.0	NM_001008419	213043.0	Mm.414292	NM_001008419	ENSMUSG00000079554	Aox2	Aoh3|Aox3l1	aldehyde oxidase 2	protein-coding	9.0	3.5	5.0	11.0	1.5	1.0
Merged-chr2-104002934-1	chr2	104002434	104003434	+	540.0	f0_balb.idr	intron (NM_175161, intron 3 of 4)	intron (NM_175161, intron 3 of 4)	-24865.0	NM_020593	57443.0	Mm.143768	NM_020593	ENSMUSG00000027180	Fbxo3	1200002G09Rik|1700026K02Rik|AI046358|Fba	F-box protein 3	protein-coding	1.0	2.0	1.5	0.0	2.0	3.0
Merged-chr13-93233226-1	chr13	93232726	93233726	+	540.0	f1_balb.idr	Intergenic	Intergenic	-40809.0	NM_001361537	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-11559450-1	chr4	11558950	11559950	+	540.0	f0_balb.idr	intron (NM_001039556, intron 1 of 14)	intron (NM_001039556, intron 1 of 14)	530.0	NM_001256145	623474.0	Mm.491200	NM_177285	ENSMUSG00000078773	Rad54b	E130016E03Rik	RAD54 homolog B (S. cerevisiae)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-114925169-1	chr11	114924669	114925669	+	540.0	f1_balb.idr	intron (NM_001347651, intron 3 of 3)	intron (NM_001347651, intron 3 of 3)	9217.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-63151959-1	chr12	63151459	63152459	+	540.0	f1_c57bl6.idr	Intergenic	Lx|LINE|L1	464172.0	NR_131949	73309.0	Mm.276558	NR_131949		Spanxn4	1700047L15Rik	SPANX family, member N4	ncRNA	0.0	0.0	0.5	1.0	0.0	0.0
Merged-chr10-77982627-1	chr10	77982127	77983127	+	540.0	f1_balb.idr	intron (NM_026431, intron 4 of 6)	intron (NM_026431, intron 4 of 6)	3977.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-147231983-1	chr4	147231483	147232483	+	540.0	f1_balb.idr	intron (NM_001039209, intron 1 of 2)	B1_Mus1|SINE|Alu	56117.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191283747-1	chr1	191283247	191284247	+	540.0	f1_c57bl6.idr	Intergenic	Intergenic	34371.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0.0	2.0	6.5	2.0	1.0	0.0
Merged-chr1-84993362-1	chr1	84992862	84993862	+	540.0	f1_balb.idr	Intergenic	Intergenic	-58279.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-3559280-1	chr8	3558780	3559780	+	540.0	f1_balb.idr	Intergenic	Intergenic	-8718.0	NM_001024728	546049.0	Mm.358733	NM_001024728	ENSMUSG00000065952	C330021F23Rik	2610027C06Rik|Rps23r1|Rps23rg1	RIKEN cDNA C330021F23 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-149800400-1	chr4	149799900	149800900	+	540.0	f1_c57bl6.idr	Intergenic	Intergenic	-26133.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	9.5	1.0	0.5	5.5	4.5	6.0
Merged-chr15-12326351-1	chr15	12325851	12326851	+	540.0	f1_balb.idr	intron (NM_025673, intron 1 of 3)	intron (NM_025673, intron 1 of 3)	4855.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-43322714-1	chr4	43322214	43323214	+	540.0	f0_balb.idr	intron (NM_177195, intron 11 of 28)	intron (NM_177195, intron 11 of 28)	55555.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	1.5	0.0	2.0	0.5	3.5	3.0
Merged-chr1-117669968-1	chr1	117669468	117670468	+	540.0	f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	640760.0	NR_153836	22099.0	Mm.426637	NM_011650	ENSMUSG00000026374	Tsn	2610034C24Rik|AU040286|C3PO|TB-RBP	translin	protein-coding	0.0	0.0	0.0	0.0	0.0	1.0
Merged-chr8-41235786-1	chr8	41235286	41236286	+	540.0	f0_balb.idr	Intergenic	Lx4A|LINE|L1	-3973.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	6.5	0.0	0.5	1.5	2.5	3.5
Merged-chr11-103266078-1	chr11	103265578	103266578	+	540.0	f1_c57bl6.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	1323.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-120335164-1	chr14	120334664	120335664	+	540.0	f1_c57bl6.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	28712.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-118590903-1	chr9	118590403	118591403	+	540.0	f1_c57bl6.idr	Intergenic	Intergenic	-15806.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-5494825-1	chr5	5494325	5495325	+	540.0	f1_c57bl6.idr	Intergenic	Intergenic	-15682.0	NM_001200025	381716.0	Mm.276086	NM_001200025	ENSMUSG00000079666	1700015F17Rik	Gm1686	RIKEN cDNA 1700015F17 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-147010153-1	chr1	147009653	147010653	+	540.0	f1_balb.idr	Intergenic	Intergenic	512466.0	NM_001145807	215378.0	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-94192228-1	chr8	94191728	94192728	+	540.0	f1_balb.idr	Intergenic	B2_Mm2|SINE|B2	13139.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-34661151-1	chr5	34660651	34661651	+	540.0	f1_balb.idr	intron (NM_001080743, intron 1 of 5)	intron (NM_001080743, intron 1 of 5)	772.0	NM_019497	14772.0	Mm.117076	NM_019497	ENSMUSG00000052783	Grk4	A830025H08Rik|GRK|Gprk2l|Gprk4	G protein-coupled receptor kinase 4	protein-coding	3.0	0.0	1.0	0.0	4.0	2.0
Merged-chr3-5577090-1	chr3	5576590	5577590	+	540.0	f1_c57bl6.idr	promoter-TSS (NM_001163301)	promoter-TSS (NM_001163301)	-842.0	NM_008994	19302.0	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	126.5	241.0	199.5	128.0	291.0	192.5
Merged-chr9-70243470-1	chr9	70242970	70243970	+	540.0	f1_balb.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	36120.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-75919582-1	chr6	75919082	75920082	+	540.0	f1_balb.idr	Intergenic	Lx3A|LINE|L1	-1322895.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	0.0	1.5	0.0	0.0	3.5	0.0
Merged-chr2-60882745-1	chr2	60882245	60883245	+	540.0	f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-1307.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-85342384-1	chr1	85341884	85342884	+	540.0	f1_balb.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-71818.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-126904160-1	chr10	126903660	126904660	+	540.0	f1_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2789.0	NM_001358970	68876.0	Mm.276769	NM_026858	ENSMUSG00000025436	Atp23	1110068E08Rik|2410012H02Rik|Xrcc6bp1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-20733995-1	chr5	20733495	20734495	+	540.0	f1_c57bl6.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	148129.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-118302941-1	chr6	118302441	118303441	+	540.0	f0_balb.idr	intron (NR_110507, intron 4 of 5)	intron (NR_110507, intron 4 of 5)	5778.0	NR_110507	102632423.0	Mm.261755	NR_110507	ENSMUSG00000107933	Gm30498	-	predicted gene, 30498	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-74950539-1	chr9	74950039	74951039	+	540.0	f1_c57bl6.idr	Intergenic	Intergenic	-2341.0	NM_001359816	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	0.0	6.0	3.5	3.5	5.0	6.5
Merged-chr7-141011394-1	chr7	141010894	141011894	+	540.0	f1_balb.idr	promoter-TSS (NM_025378)	promoter-TSS (NM_025378)	-650.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-129997686-1	chr5	129997186	129998186	+	540.0	f1_c57bl6.idr	intron (NM_001357025, intron 7 of 10)	intron (NM_001357025, intron 7 of 10)	5363.0	NM_010368	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	0.0	6.0	3.0	1.0	0.0	3.0
Merged-chr5-66385804-1	chr5	66385304	66386304	+	540.0	f0_balb.idr	intron (NM_001310626, intron 8 of 15)	MLT1H|LTR|ERVL-MaLR	-48139.0	NM_001201416	11787.0	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	1.0	0.0	2.0	0.0	0.0	0.0
Merged-chr18-16066237-1	chr18	16065737	16066737	+	540.0	f1_balb.idr	Intergenic	L1_Mus2|LINE|L1	-348191.0	NM_199055	71367.0	Mm.329304	NM_199055	ENSMUSG00000047161	Chst9	5430438D01Rik	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-125415284-1	chr6	125414784	125415784	+	540.0	f1_balb.idr	Intergenic	B1_Mur2|SINE|Alu	-34780.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-30217201-1	chr14	30216701	30217701	+	540.0	f0_c57.idr	intron (NM_001083616, intron 3 of 46)	intron (NM_001083616, intron 3 of 46)	136285.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	0.0	1.5	3.0	0.0	14.5	7.5
Merged-chr5-34647827-1	chr5	34647327	34648327	+	540.0	f1_balb.idr	intron (NM_029278, intron 10 of 17)	intron (NM_029278, intron 10 of 17)	-10615.0	NM_026660	68294.0	Mm.34564	NM_026660	ENSMUSG00000001082	Mfsd10	0610009O03Rik|Tetran	major facilitator superfamily domain containing 10	protein-coding	10.5	1.5	10.5	3.5	3.0	7.0
Merged-chr4-32252559-2	chr4	32252067	32253067	+	540.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-164868.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	3.5	16.5	13.5	9.5	6.0	11.0
Merged-chr14-56809483-1	chr14	56808983	56809983	+	540.0	f1_c57bl6.idr	intron (NR_136882, intron 1 of 6)	intron (NR_136882, intron 1 of 6)	1981.0	NM_001253753	219105.0	Mm.473172	NM_144842	ENSMUSG00000040123	Zmym5	9830124H08Rik	zinc finger, MYM-type 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-133310185-1	chr4	133309685	133310685	+	540.0	f1_c57bl6.idr	intron (NM_199306, intron 5 of 15)	intron (NM_199306, intron 5 of 15)	29130.0	NM_199306	230796.0	Mm.226576	NM_199306	ENSMUSG00000037622	Wdtc1	Gm695|adipose|adp	WD and tetratricopeptide repeats 1	protein-coding	14.0	5.5	0.0	6.0	5.0	4.5
Merged-chr13-64184486-1	chr13	64183986	64184986	+	540.0	f1_balb.idr	intron (NM_019986, intron 6 of 7)	intron (NM_019986, intron 6 of 7)	22620.0	NM_019986	56541.0	Mm.40989	NM_019986	ENSMUSG00000021476	Habp4	4933413D03Rik|4933428J01Rik	hyaluronic acid binding protein 4	protein-coding	1.0	8.5	0.0	1.0	2.5	0.0
Merged-chr1-140180895-1	chr1	140180395	140181395	+	540.0	f0_balb.idr	intron (NM_009888, intron 1 of 21)	intron (NM_009888, intron 1 of 21)	2516.0	NM_009888	12628.0	Mm.8655	NM_009888	ENSMUSG00000026365	Cfh	Mud-1|NOM|Sas-1|Sas1	complement component factor h	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-7925350-1	chr15	7924850	7925850	+	540.0	f1_balb.idr	intron (NM_001081402, intron 10 of 17)	intron (NM_001081402, intron 10 of 17)	109800.0	NM_001301357	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-24551282-1	chr5	24550782	24551782	+	540.0	f1_balb.idr	intron (NR_033188, intron 5 of 17)	intron (NR_033188, intron 5 of 17)	4187.0	NR_033188	231045.0	Mm.255800	NM_177676	ENSMUSG00000038199	4931409K22Rik	Iqca1l|Iqca1p1	RIKEN cDNA 4931409K22 gene	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-167758086-1	chr2	167757586	167758586	+	540.0	f1_balb.idr	Intergenic	Intergenic	66909.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-45252201-1	chr9	45251701	45252701	+	540.0	f0_c57.idr	Intergenic	Intergenic	14506.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-52260139-1	chr6	52259639	52260639	+	540.0	f1_c57bl6.idr	exon (NM_008264, exon 3 of 4)	exon (NM_008264, exon 3 of 4)	741.0	NM_008264	15398.0	Mm.377086	NM_008264		Hoxa13	Hd|Hox-1.10	homeobox A13	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-17599550-1	chr6	17599050	17600050	+	540.0	f1_c57bl6.idr	Intergenic	Intergenic	-37460.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-87501254-1	chr3	87500754	87501754	+	540.0	f0_balb.idr	TTS (NM_001113238)	TTS (NM_001113238)	-24324.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	4.5	5.5	3.0	1.0	0.0	6.5
Merged-chr12-85604080-1	chr12	85603580	85604580	+	540.0	f1_c57bl6.idr	intron (NM_001205053, intron 1 of 3)	intron (NM_001205053, intron 1 of 3)	4062.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr1-191018077-1	chr1	191017577	191018577	+	540.0	f1_c57bl6.idr	intron (NM_001313747, intron 1 of 8)	intron (NM_001313747, intron 1 of 8)	-7274.0	NR_027298	100125339.0	Mm.472263	NR_027298	ENSMUSG00000097845	A230020J21Rik	-	RIKEN cDNA A230020J21 gene	ncRNA	0.0	2.5	0.0	0.0	2.5	0.0
Merged-chr15-103511767-1	chr15	103511267	103512267	+	540.0	f1_c57bl6.idr	intron (NM_001357980, intron 1 of 14)	intron (NM_001357980, intron 1 of 14)	-3210.0	NM_001285890	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-9779075-1	chr4	9778575	9779575	+	540.0	f1_balb.idr	intron (NR_030693, intron 1 of 3)	intron (NR_030693, intron 1 of 3)	8490.0	NR_030693	320152.0	Mm.159946	NR_030693		4930412C18Rik	5730591J02Rik	RIKEN cDNA 4930412C18 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-97428654-1	chr11	97428154	97429154	+	540.0	f1_c57bl6.idr	Intergenic	Intergenic	-21506.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0.0	0.0	0.0	0.0	0.0	0.5
Merged-chr3-130708150-1	chr3	130707650	130708650	+	540.0	f1_balb.idr	intron (NM_025509, intron 1 of 3)	intron (NM_025509, intron 1 of 3)	1294.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr19-60281977-1	chr19	60281477	60282477	+	540.0	f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	-55276.0	NM_001358273	76539.0	Mm.290183	NM_029648	ENSMUSG00000057858	Fam204a	2310065H12Rik|2610015K05Rik|D19Ertd737e	family with sequence similarity 204, member A	protein-coding	0.5	2.5	0.0	0.0	9.0	0.5
Merged-chr12-85626959-1	chr12	85626459	85627459	+	540.0	f1_balb.idr	intron (NM_001205053, intron 2 of 3)	Lx8b|LINE|L1	26941.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-89971255-1	chr9	89970755	89971755	+	540.0	f1_balb.idr	intron (NM_001357743, intron 8 of 26)	intron (NM_001357743, intron 8 of 26)	61480.0	NM_001357743	19417.0	Mm.44561	NM_011245	ENSMUSG00000032356	Rasgrf1	AI844718|CDC25|CDC25Mm|Gnrp|Grf1|Grfbeta|P190-A|Ras-GRF1|p190|p190RhoGEF	RAS protein-specific guanine nucleotide-releasing factor 1	protein-coding	0.0	0.0	0.0	0.0	5.5	1.0
Merged-chr5-36578642-1	chr5	36578142	36579142	+	540.0	f1_balb.idr	intron (NM_001113362, intron 2 of 14)	RSINE1|SINE|B4	3755.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0.0	0.0	1.0	2.0	4.5	7.0
Merged-chr10-80302681-1	chr10	80302181	80303181	+	540.0	f1_balb.idr	intron (NM_011789, intron 3 of 13)	intron (NM_011789, intron 3 of 13)	861.0	NM_011789	23805.0	Mm.57247	NM_011789	ENSMUSG00000020135	Apc2	AI852447|APCL|R75424	adenomatosis polyposis coli 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-116209499-1	chr6	116208999	116209999	+	540.0	f1_balb.idr	intron (NM_026585, intron 3 of 30)	intron (NM_026585, intron 3 of 30)	1466.0	NM_026585	28006.0	Mm.28524	NM_026585	ENSMUSG00000024104	Washc2	A130095H06|C530005J20Rik|D6Wsu116e|Fam21	WASH complex subunit 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-105622023-1	chr8	105621523	105622523	+	540.0	f1_c57bl6.idr	3' UTR (NM_001081241, exon 22 of 22)	3' UTR (NM_001081241, exon 22 of 22)	6557.0	NR_035492	100316712.0		NR_035492	ENSMUSG00000089432	Mir1966	mir-1966|mmu-mir-1966	microRNA 1966	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-171705466-1	chr2	171704966	171705966	+	540.0	f1_balb.idr	Intergenic	B4A|SINE|B4	257333.0	NR_040509	75655.0	Mm.396203	NR_040509	ENSMUSG00000086823	1700028P15Rik	-	RIKEN cDNA 1700028P15 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr5-117956107-1	chr5	117955607	117956607	+	540.0	f1_c57bl6.idr	3' UTR (NM_008712, exon 28 of 28)	3' UTR (NM_008712, exon 28 of 28)	-20663.0	NM_145564	231670.0	Mm.21912	NM_145564	ENSMUSG00000032898	Fbxo21	2810425J22Rik|AU016673	F-box protein 21	protein-coding	0.0	0.0	2.5	0.5	0.0	0.0
Merged-chr11-94543599-1	chr11	94543099	94544099	+	540.0	f1_c57bl6.idr	exon (NM_001013381, exon 6 of 9)	exon (NM_001013381, exon 6 of 9)	5608.0	NM_001013381	237926.0	Mm.342275	NM_001013381	ENSMUSG00000039096	Rsad1	B430319G23|BC056485	radical S-adenosyl methionine domain containing 1	protein-coding	0.0	0.0	1.5	0.0	0.0	0.0
Merged-chr3-123168964-1	chr3	123168464	123169464	+	540.0	f0_c57.idr	intron (NM_080451, intron 1 of 4)	intron (NM_080451, intron 1 of 4)	67185.0	NM_080451	118449.0	Mm.34359	NM_080451	ENSMUSG00000050315	Synpo2	1110069I04Rik|2310068J10Rik|9530006G20Rik|AI848603|Myo	synaptopodin 2	protein-coding	2.0	6.5	1.0	6.5	3.0	3.5
Merged-chr15-59531327-1	chr15	59530827	59531827	+	540.0	f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-117327.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	7.0	0.0	7.5	10.0	3.5	3.5
Merged-chr13-102888572-1	chr13	102888072	102889072	+	540.0	f0_balb.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	128317.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-117471884-2	chr10	117471420	117472420	+	540.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-24485.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-119156553-1	chr2	119156053	119157053	+	540.0	f0_balb.idr	intron (NM_001033136, intron 1 of 12)	CpG	481.0	NM_001033136	67809.0	Mm.475909	NM_001033136	ENSMUSG00000070730	Rmdn3	1200015F23Rik|AI131757|Fam82a2|Ptpip51|RMD-3|Rmd3	regulator of microtubule dynamics 3	protein-coding	38.0	52.5	47.0	20.0	72.5	36.0
Merged-chr4-135080597-1	chr4	135080097	135081097	+	540.0	f1_balb.idr	Intergenic	Intergenic	-40048.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-98843957-1	chr15	98843457	98844457	+	540.0	f1_c57bl6.idr	exon (NM_001033276, exon 40 of 55)	exon (NM_001033276, exon 40 of 55)	-12449.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-30335646-1	chr7	30335146	30336146	+	540.0	f1_balb.idr	Intergenic	Intergenic	-13271.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	9.0	1.0	2.0	0.0	5.0	0.0
Merged-chr6-32477443-2	chr6	32476943	32477943	+	540.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-33698.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr8-104099987-1	chr8	104099487	104100487	+	540.0	f1_balb.idr	intron (NR_131138, intron 1 of 2)	intron (NR_131138, intron 1 of 2)	-1638.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-141069794-1	chr7	141069294	141070294	+	540.0	f1_balb.idr	intron (NM_177897, intron 14 of 19)	intron (NM_177897, intron 14 of 19)	-8435.0	NM_001162924	56460.0	Mm.350037	NM_019762	ENSMUSG00000054065	Pkp3	2310056L12Rik	plakophilin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr7-98522765-1	chr7	98522265	98523265	+	540.0	f1_c57bl6.idr	Intergenic	Intergenic	28543.0	NM_001113379	434215.0	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	2.0	1.5	1.0	0.0	4.5	0.0
Merged-chr1-164250661-1	chr1	164250161	164251161	+	540.0	f1_c57bl6.idr	intron (NM_001276455, intron 1 of 5)	intron (NM_001276455, intron 1 of 5)	1615.0	NM_054087	116914.0	Mm.35444	NM_054087	ENSMUSG00000040918	Slc19a2	AV276020|AW322295|DDA1|THTR1|TRMA|ThTr-1	solute carrier family 19 (thiamine transporter), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr13-64436807-1	chr13	64436307	64437307	+	540.0	f1_c57bl6.idr	exon (NM_053180, exon 5 of 8)	exon (NM_053180, exon 5 of 8)	4254.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	5.5	3.5	2.5	0.0	3.0	7.0
Merged-chr5-24578318-1	chr5	24577818	24578818	+	540.0	f0_balb.idr	promoter-TSS (NM_001190443)	promoter-TSS (NM_001190443)	-851.0	NM_001190443	27407.0	Mm.21629	NM_013853	ENSMUSG00000028953	Abcf2	0710005O05Rik|Drr3|E430001O06	ATP-binding cassette, sub-family F (GCN20), member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-22603164-1	chr4	22602664	22603664	+	540.0	f1_c57bl6.idr	Intergenic	Intergenic	112616.0	NR_131335	105500046.0		NR_131335	ENSMUSG00000107859	Gm30731	Pnky|lnc-pou3f2	predicted gene, 30731	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr6-31201386-1	chr6	31200886	31201886	+	540.0	f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	L1MC4|LINE|L1	17088.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-41375769-1	chr2	41375269	41376269	+	540.0	f1_balb.idr	intron (NM_053011, intron 21 of 90)	intron (NM_053011, intron 21 of 90)	1071799.0	NR_105754	102465171.0		NR_105754	ENSMUSG00000098660	Mir6336	Gm27584|mmu-mir-6336	microRNA 6336	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr11-110464591-1	chr11	110464091	110465091	+	540.0	f0_c57.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	-13924.0	NM_001356347	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	10.5	14.5	14.5	6.0	8.5	5.0
Merged-chr5-72916783-1	chr5	72916283	72917283	+	540.0	f1_c57bl6.idr	intron (NM_153567, intron 1 of 8)	intron (NM_153567, intron 1 of 8)	2421.0	NM_153567	75991.0	Mm.121285	NM_153567	ENSMUSG00000036087	Slain2	5033405K12Rik|8030444K12Rik|AI596370	SLAIN motif family, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr9-14996633-1	chr9	14996133	14997133	+	540.0	f1_c57bl6.idr	Intergenic	Intergenic	48845.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr4-3675726-1	chr4	3675226	3676226	+	540.0	f1_balb.idr	Intergenic	Intergenic	-2395.0	NM_001111096	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	1.0	6.0	2.0	0.0	6.5	6.5
Merged-chr2-9879303-1	chr2	9878803	9879803	+	540.0	f1_balb.idr	promoter-TSS (NM_008091)	promoter-TSS (NM_008091)	-703.0	NM_001355112	14462.0	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr10-127337161-1	chr10	127336661	127337661	+	540.0	f1_c57bl6.idr	intron (NM_010296, intron 5 of 12)	intron (NM_010296, intron 5 of 12)	4418.0	NM_010296	14632.0	Mm.391450	NM_010296	ENSMUSG00000025407	Gli1	AV235269|Zfp-5|Zfp5	GLI-Kruppel family member GLI1	protein-coding	0.0	1.0	0.0	0.0	0.0	0.0
Merged-chr8-11421219-1	chr8	11420719	11421719	+	540.0	f1_balb.idr	exon (NM_009932, exon 22 of 48)	exon (NM_009932, exon 22 of 48)	-56710.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-13007008-1	chr18	13006508	13007508	+	540.0	f1_c57bl6.idr	promoter-TSS (NM_153087)	promoter-TSS (NM_153087)	18.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-35317682-1	chr3	35317182	35318182	+	540.0	f1_c57bl6.idr	Intergenic	Intergenic	348481.0	NR_040748	625963.0	Mm.251506	NR_040748	ENSMUSG00000105662	Gm6639	-	predicted gene 6639	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr3-27268286-1	chr3	27267786	27268786	+	540.0	f1_balb.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-48791.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-31576841-1	chr17	31576341	31577341	+	540.0	f0_balb.idr	intron (NM_016670, intron 1 of 10)	ORR1F-int|LTR|ERVL-MaLR	12068.0	NM_016670	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr14-118182839-1	chr14	118182339	118183339	+	540.0	f1_balb.idr	Intergenic	Intergenic	45712.0	NM_021434	58245.0	Mm.275411	NM_021434	ENSMUSG00000022131	Gpr180	AB041545|E130016I23Rik|Itr	G protein-coupled receptor 180	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr2-32857104-1	chr2	32856604	32857604	+	540.0	f1_balb.idr	Intergenic	B1_Mus2|SINE|Alu	-9867.0	NM_001113569	20910.0	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-14600043-1	chr15	14599543	14600543	+	540.0	f1_balb.idr	Intergenic	L1_Mus4|LINE|L1	-1426368.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.5	1.5	4.0	5.0	1.0	0.0
Merged-chr11-58007761-1	chr11	58007261	58008261	+	540.0	f1_balb.idr	Intergenic	B4A|SINE|B4	-1303.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	0.0	0.0	1.0	0.5	2.5	0.0
Merged-chr6-131003518-1	chr6	131003018	131004018	+	540.0	f0_balb.idr	Intergenic	Intergenic	243844.0	NM_001170851	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr18-36401614-1	chr18	36401114	36402114	+	540.0	f1_balb.idr	Intergenic	Intergenic	52881.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr15-78889888-1	chr15	78889388	78890388	+	540.0	f1_c57bl6.idr	intron (NM_145929, intron 11 of 16)	intron (NM_145929, intron 11 of 16)	-1952.0	NR_105920	102466210.0		NR_105920	ENSMUSG00000099267	Mir6955	Gm27769|mmu-mir-6955	microRNA 6955	ncRNA	5.0	0.0	1.5	2.5	0.0	2.0
Merged-chr16-32075119-1	chr16	32074619	32075619	+	540.0	f1_balb.idr	intron (NM_177326, intron 1 of 14)	B2_Mm2|SINE|B2	4223.0	NM_177326	224105.0	Mm.234204	NM_177326	ENSMUSG00000022781	Pak2	5330420P17Rik|A130002K10Rik|AI836325|D16Ertd269e|PAK-2|mKIAA4182	p21 (RAC1) activated kinase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-56076036-1	chr17	56075536	56076536	+	540.0	f1_balb.idr	intron (NM_024432, intron 1 of 11)	B2_Mm2|SINE|B2	3297.0	NM_024432	66530.0	Mm.28000	NM_024432	ENSMUSG00000019578	Ubxn6	1200008L11Rik|2210415J11Rik|AU040909|Ubxd1|Ubxdc2	UBX domain protein 6	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr17-28936747-1	chr17	28936247	28937247	+	540.0	f1_c57bl6.idr	intron (NM_153390, intron 2 of 2)	B3|SINE|B2	5515.0	NM_153390	69307.0	Mm.107605	NM_153390	ENSMUSG00000045378	Pxt1	1700001G18Rik|Stepp	peroxisomal, testis specific 1	protein-coding	2.5	0.0	0.5	0.0	2.5	0.5